Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Consequence	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	t_ref_count	t_alt_count	n_ref_count	n_alt_count	HGVSc	HGVSp	HGVSp_Short	Transcript_ID	RefSeq	Protein_position	Codons	Exon_Number	COMMENTS	AA_MAF	AFR_MAF	ALLELE_NUM	AMR_MAF	ASN_MAF	Allele	Amino_Acid_Change	Amino_acids	BIOTYPE	CANONICAL	CCDS	CDS_position	CLIN_SIG	Comments	DISTANCE	DOMAINS	EAS_MAF	EA_MAF	ENSP	EUR_MAF	EXON	ExAC_AF	ExAC_AF_AFR	ExAC_AF_AMR	ExAC_AF_EAS	ExAC_AF_FIN	ExAC_AF_NFE	ExAC_AF_OTH	ExAC_AF_SAS	Existing_variation	FILTER	Feature	Feature_type	GENE_PHENO	GMAF	Gene	HGNC_ID	HGVS_OFFSET	HIGH_INF_POS	IMPACT	INTRON	IS_NEW	MA:FIS	MA:FImpact	MA:link.MSA	MA:link.PDB	MA:link.var	MA:protein.change	MINIMISED	MOTIF_NAME	MOTIF_POS	MOTIF_SCORE_CHANGE	PHENO	PICK	PUBMED	PolyPhen	SAS_MAF	SIFT	SOMATIC	SWISSPROT	SYMBOL	SYMBOL_SOURCE	TREMBL	TSL	Transcript	UNIPARC	VARIANT_CLASS	all_effects	amino_acid_change	cDNA_Change	cDNA_position	cdna_change	comments	n_depth	t_depth	transcript
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0028912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	133	209	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
FYN	2534	MSKCC	GRCh37	6	111983080	111983081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	141	168	0	ENST00000368678.4:c.1466_1467insT	p.Ile490HisfsTer5	p.I490Hfs*5	ENST00000368678		489	ccc/ccTc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246994	53246994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	85	173	0	ENST00000375401.3:c.506C>T	p.Ser169Phe	p.S169F	ENST00000375401	NM_004187.3	169	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0002794-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			725	104	389	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911521	131911521	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002794-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			749	134	372	0	ENST00000265335.6:c.266T>G	p.Val89Gly	p.V89G	ENST00000265335		89	gTc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002794-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			542	81	391	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486211	8486211	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs994861872		P-0002794-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			679	61	354	1	ENST00000356435.5:c.2606C>A	p.Thr869Asn	p.T869N	ENST00000356435		869	aCt/aAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133219537	133219537	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002794-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			540	76	279	1	ENST00000320574.5:c.4597G>T	p.Glu1533Ter	p.E1533*	ENST00000320574	NM_006231.2	1533	Gag/Tag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472640	88472640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002794-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			390	43	255	0	ENST00000360948.2:c.1915C>A	p.Leu639Ile	p.L639I	ENST00000360948	NM_001012338.2	639	Ctt/Att																																																																														
NF1	4763	MSKCC	GRCh37	17	29496947	29496947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002794-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			504	92	303	0	ENST00000358273.4:c.518A>T	p.Asp173Val	p.D173V	ENST00000358273	NM_001042492.2	173	gAt/gTt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31387081	31387081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs952998177		P-0002794-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			611	76	395	1	ENST00000328111.2:c.1706C>T	p.Ala569Val	p.A569V	ENST00000328111	NM_006892.3	569	gCa/gTa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225973	53225973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002794-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			877	92	546	0	ENST00000375401.3:c.2876G>T	p.Ser959Ile	p.S959I	ENST00000375401	NM_004187.3	959	aGt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0003698-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			328	109	225	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
MST1R	4486	MSKCC	GRCh37	3	49933259	49933259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003698-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			505	86	718	0	ENST00000296474.3:c.2851G>T	p.Asp951Tyr	p.D951Y	ENST00000296474	NM_002447.2	951	Gat/Tat																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435631	149435631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs690016557		P-0003698-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			324	36	317	0	ENST00000286301.3:c.2512G>A	p.Val838Ile	p.V838I	ENST00000286301	NM_005211.3	838	Gtc/Atc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913797	32913797	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003698-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			865	162	942	0	ENST00000380152.3:c.5305G>C	p.Asp1769His	p.D1769H	ENST00000380152		1769	Gat/Cat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914259	32914259	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003698-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			839	182	916	0	ENST00000380152.3:c.5767G>C	p.Asp1923His	p.D1923H	ENST00000380152		1923	Gac/Cac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136104	11136104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003698-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			475	98	451	0	ENST00000344626.4:c.3088G>T	p.Gly1030Cys	p.G1030C	ENST00000344626	NM_003072.3	1030	Ggc/Tgc																																																																														
EP300	2033	MSKCC	GRCh37	22	41543840	41543840	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003698-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			371	45	338	0	ENST00000263253.7:c.2132-1G>A		p.X711_splice	ENST00000263253	NM_001429.3	711																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44920650	44920650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003698-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			536	194	344	0	ENST00000377967.4:c.1411C>T	p.Pro471Ser	p.P471S	ENST00000377967	NM_021140.2	471	Cca/Tca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	138	100	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	727	164	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
INSRR	3645	MSKCC	GRCh37	1	156811907	156811907	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1317721002		P-0003823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	101	295	0	ENST00000368195.3:c.3394G>A	p.Gly1132Arg	p.G1132R	ENST00000368195	NM_014215.2	1132	Ggg/Agg																																																																														
POLE	5426	MSKCC	GRCh37	12	133212571	133212587	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAATTGTCAGAGAAT	AGAAATTGTCAGAGAAT	-			P-0003823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	36	239	0	ENST00000320574.5:c.5702_5718del	p.His1901LeufsTer15	p.H1901Lfs*15	ENST00000320574	NM_006231.2	1901	cATTCTCTGACAATTTCT/c																																																																														
CDH1	999	MSKCC	GRCh37	16	68842414	68842415	+	protein_altering_variant	In_Frame_Ins	INS	-	-	ATA			P-0003823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	88	354	0	ENST00000261769.5:c.475_476insATA	p.Pro159delinsHisThr	p.P159delinsHT	ENST00000261769	NM_004360.3	159	cct/cATAct																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443759	52443759	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	65	298	0	ENST00000460680.1:c.38G>T	p.Gly13Val	p.G13V	ENST00000460680	NM_004656.3	13	gGc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0007181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	99	360	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0007181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	114	408	2	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	55	249	0	ENST00000257430.4:c.4473dup	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259335	89259335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750779844		P-0007181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	64	470	1	ENST00000336596.2:c.479G>A	p.Arg160His	p.R160H	ENST00000336596	NM_005233.5	160	cGt/cAt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843614	156843614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs797045060		P-0007181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	173	504	1	ENST00000524377.1:c.1040G>A	p.Arg347His	p.R347H	ENST00000524377	NM_002529.3	347	cGc/cAc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068102	94068102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	260	706	0	ENST00000369303.4:c.860C>G	p.Ser287Cys	p.S287C	ENST00000369303	NM_004440.3	287	tCc/tGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	368	516	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753975	57753975	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			698	192	376	0	ENST00000274289.3:c.649A>T	p.Met217Leu	p.M217L	ENST00000274289	NM_006622.3	217	Atg/Ttg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528852	157528852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			715	127	430	0	ENST00000346085.5:c.6577G>T	p.Asp2193Tyr	p.D2193Y	ENST00000346085	NM_020732.3	2193	Gac/Tac																																																																														
PARK2	0	MSKCC	GRCh37	6	162683782	162683782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	91	310	0	ENST00000366898.1:c.187C>A	p.Gln63Lys	p.Q63K	ENST00000366898	NM_004562.2	63	Cag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460527	8460527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1489849541		P-0007779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	182	483	1	ENST00000356435.5:c.3759G>A	p.Met1253Ile	p.M1253I	ENST00000356435		1253	atG/atA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570329	95570329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	86	346	0	ENST00000343455.3:c.3404A>G	p.Gln1135Arg	p.Q1135R	ENST00000343455	NM_177438.2	1135	cAa/cGa																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110129	8110129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	306	471	0	ENST00000585124.1:c.476G>T	p.Arg159Leu	p.R159L	ENST00000585124	NM_004217.3	159	cGc/cTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243620	41243620	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			770	254	600	0	ENST00000357654.3:c.3928A>T	p.Thr1310Ser	p.T1310S	ENST00000357654	NM_007294.3	1310	Aca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577412	7577543	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTC	ATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTC	-			P-0007779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	232	210	0	ENST00000269305.4:c.738_782+87del		p.X246_splice	ENST00000269305	NM_001126112.2	246																																																																															
TSC1	7248	MSKCC	GRCh37	9	135782690	135782690	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			734	60	470	0	ENST00000298552.3:c.1331C>T	p.Ser444Leu	p.S444L	ENST00000298552	NM_001162426.1	444	tCa/tTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195085	123195085	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	48	389	0	ENST00000218089.9:c.1428T>A	p.His476Gln	p.H476Q	ENST00000218089	NM_001042749.1	476	caT/caA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876660821		P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	314	156	0	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	163	128	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859016	57859016	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765428970		P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	82	453	0	ENST00000228682.2:c.512G>A	p.Arg171Gln	p.R171Q	ENST00000228682	NM_005269.2	171	cGg/cAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528589	89528589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	58	209	0	ENST00000336596.2:c.2889G>T	p.Lys963Asn	p.K963N	ENST00000336596	NM_005233.5	963	aaG/aaT																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245506	153245506	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	82	246	0	ENST00000281708.4:c.1685C>A	p.Ser562Ter	p.S562*	ENST00000281708	NM_033632.3	562	tCa/tAa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520761	176520761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141530067		P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	129	155	0	ENST00000292408.4:c.1504G>A	p.Val502Ile	p.V502I	ENST00000292408	NM_213647.1	502	Gtc/Atc																																																																														
BLM	641	MSKCC	GRCh37	15	91337522	91337522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	59	302	0	ENST00000355112.3:c.3145G>A	p.Gly1049Arg	p.G1049R	ENST00000355112	NM_000057.2	1049	Gga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	82	333	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0009446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	91	328	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	167	626	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	205	782	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
BRAF	673	MSKCC	GRCh37	7	140534539	140534539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	120	475	1	ENST00000288602.6:c.374C>T	p.Ser125Phe	p.S125F	ENST00000288602	NM_004333.4	125	tCt/tTt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206722	36206722	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	162	629	0	ENST00000300305.3:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000300305		264	Cag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68845618	68845618	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	210	590	0	ENST00000261769.5:c.864del	p.Asp288GlufsTer6	p.D288Efs*6	ENST00000261769	NM_004360.3	288	gaC/ga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15995270	15995270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	155	443	0	ENST00000268712.3:c.2923G>A	p.Glu975Lys	p.E975K	ENST00000268712	NM_006311.3	975	Gag/Aag																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14629147	14629147	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	70	343	0	ENST00000254322.2:c.15C>G	p.Tyr5Ter	p.Y5*	ENST00000254322	NM_006145.1	5	taC/taG																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99149949	99149949	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	106	417	0	ENST00000074304.5:c.261G>C	p.Glu87Asp	p.E87D	ENST00000074304	NM_001134224.1	87	gaG/gaC																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519961		P-0019539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	200	453	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55602664	55602664	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C	rs1057519713		P-0019539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	466	343	0	ENST00000288135.5:c.2485G>C	p.Ala829Pro	p.A829P	ENST00000288135	NM_000222.2	829	Gct/Cct																																																																														
B2M	567	MSKCC	GRCh37	15	45003779	45003779	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	218	465	0	ENST00000558401.1:c.35T>G	p.Leu12Arg	p.L12R	ENST00000558401	NM_004048.2	12	cTa/cGa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066763	94066764	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0019539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	154	409	0	ENST00000369303.4:c.995_996delinsAT	p.Pro332His	p.P332H	ENST00000369303	NM_004440.3	332	cCA/cAT																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	61	941	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	58	555	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	96	458	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
CIC	23152	MSKCC	GRCh37	19	42791719	42791719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	66	640	0	ENST00000575354.2:c.605G>A	p.Arg202Gln	p.R202Q	ENST00000575354	NM_015125.3	202	cGg/cAg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118918	70118918	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	118	908	2	ENST00000245479.2:c.490C>T	p.Gln164Ter	p.Q164*	ENST00000245479	NM_000346.3	164	Cag/Tag																																																																														
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	95	881	9	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																														
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	53	550	3	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52724244	52724244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	49	532	0	ENST00000322088.6:c.1376G>A	p.Arg459His	p.R459H	ENST00000322088	NM_014225.5	459	cGc/cAc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	65	743	1	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	47	547	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	85	721	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	55	923	5	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958127	2958127	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs769192567		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	88	866	0	ENST00000396946.4:c.2605C>T	p.Arg869Trp	p.R869W	ENST00000396946	NM_032415.4	869	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445041	49445041	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	72	759	0	ENST00000301067.7:c.2425del	p.Gln809ArgfsTer121	p.Q809Rfs*121	ENST00000301067	NM_003482.3	809	Cag/ag																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	110	978	6	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243809211	243809211	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	50	690	0	ENST00000263826.5:c.413C>G	p.Thr138Ser	p.T138S	ENST00000263826	NM_005465.4	138	aCc/aGc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998724	100998725	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	47	936	0	ENST00000325455.5:c.1077dup	p.Asp360ArgfsTer19	p.D360Rfs*19	ENST00000325455	NM_001202474.3	359	-/C																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	46	758	0	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56862947	56862947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	62	622	0	ENST00000308159.5:c.853G>A	p.Gly285Arg	p.G285R	ENST00000308159	NM_014669.4	285	Ggg/Agg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2220106	2220106	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	81	709	0	ENST00000398665.3:c.2692-1G>T		p.X898_splice	ENST00000398665	NM_032482.2	898																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2225404	2225404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	67	694	4	ENST00000398665.3:c.3614C>T	p.Ala1205Val	p.A1205V	ENST00000398665	NM_032482.2	1205	gCa/gTa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965749	18965749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	130	1067	0	ENST00000262803.5:c.1327C>A	p.His443Asn	p.H443N	ENST00000262803	NM_002911.3	443	Cac/Aac																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918147	50918147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778972543		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	74	884	2	ENST00000440232.2:c.2464G>A	p.Asp822Asn	p.D822N	ENST00000440232	NM_002691.3	822	Gac/Aac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686887	117686887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	23	429	0	ENST00000368508.3:c.2830C>A	p.Pro944Thr	p.P944T	ENST00000368508	NM_002944.2	944	Cct/Act																																																																														
EGFR	1956	MSKCC	GRCh37	7	55214367	55214367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778252		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	74	865	0	ENST00000275493.2:c.493C>T	p.Arg165Trp	p.R165W	ENST00000275493	NM_005228.3	165	Cgg/Tgg																																																																														
HGF	3082	MSKCC	GRCh37	7	81340797	81340797	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs761396857		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	40	442	0	ENST00000222390.5:c.1444C>T	p.His482Tyr	p.H482Y	ENST00000222390	NM_000601.4	482	Cat/Tat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860464	151860464	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147350420		P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	86	726	1	ENST00000262189.6:c.10198C>T	p.Arg3400Cys	p.R3400C	ENST00000262189	NM_170606.2	3400	Cgt/Tgt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275776	38275776	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	43	720	0	ENST00000425967.3:c.1493A>G	p.Glu498Gly	p.E498G	ENST00000425967	NM_001174067.1	498	gAa/gGa																																																																														
LYN	4067	MSKCC	GRCh37	8	56863053	56863054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	42	734	2	ENST00000519728.1:c.327dup	p.Glu110ArgfsTer40	p.E110Rfs*40	ENST00000519728	NM_002350.3	107	aca/acAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98215857	98215858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	205	818	0	ENST00000331920.6:c.3351dup	p.Ala1118CysfsTer27	p.A1118Cfs*27	ENST00000331920	NM_000264.3	1117	-/T																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0025241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	289	482	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578206	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0025241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	408	744	0	ENST00000269305.4:c.642_643del	p.His214GlnfsTer7	p.H214Qfs*7	ENST00000269305	NM_001126112.2	214	caTAgt/cagt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982386	25982386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	209	406	0	ENST00000435504.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000435504		302	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710554	40710554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746059787		P-0025241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	168	727	0	ENST00000373198.4:c.4297C>T	p.Arg1433Cys	p.R1433C	ENST00000373198	NM_133170.3	1433	Cgt/Tgt																																																																														
PGR	5241	MSKCC	GRCh37	11	100933464	100933464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	120	283	0	ENST00000325455.5:c.1926C>A	p.Phe642Leu	p.F642L	ENST00000325455	NM_001202474.3	642	ttC/ttA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578237	7578237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	139	733	0	ENST00000269305.4:c.612G>T	p.Glu204Asp	p.E204D	ENST00000269305	NM_001126112.2	204	gaG/gaT																																																																														
NF2	4771	MSKCC	GRCh37	22	30051644	30051644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	67	436	0	ENST00000338641.4:c.578C>G	p.Ala193Gly	p.A193G	ENST00000338641	NM_000268.3	193	gCa/gGa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593606	55593607	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGG			P-0025754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	729	502	0	ENST00000288135.5:c.1673_1675dup	p.Lys558_Val559insGlu	p.K558_V559insE	ENST00000288135	NM_000222.2	558	aag/aAGGag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509533	106509533	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs140765012		P-0025754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1274	69	520	0	ENST00000359195.3:c.1527C>A	p.Asp509Glu	p.D509E	ENST00000359195	NM_002649.2	509	gaC/gaA																																																																														
KIT	3815	MSKCC	GRCh37	4	55593580	55593580	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0026679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	113	206	0	ENST00000288135.5:c.1648-2A>T		p.X550_splice	ENST00000288135	NM_000222.2	550																																																																															
KIT	3815	MSKCC	GRCh37	4	55593586	55593606	+	inframe_deletion	In_Frame_Del	DEL	CCATGTATGAAGTACAGTGGA	CCATGTATGAAGTACAGTGGA	-			P-0026679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	118	223	0	ENST00000288135.5:c.1652_1672del	p.Pro551_Lys558delinsGln	p.P551_K558delinsQ	ENST00000288135	NM_000222.2	551	cCCATGTATGAAGTACAGTGGAag/cag																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045842	26045842	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	204	264	0	ENST00000540144.1:c.204C>G	p.Phe68Leu	p.F68L	ENST00000540144	NM_003531.2	68	ttC/ttG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0027419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			376	468	376	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
SDHA	6389	MSKCC	GRCh37	5	223682	223682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs369321221		P-0027419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			525	31	287	0	ENST00000264932.6:c.149C>T	p.Ser50Phe	p.S50F	ENST00000264932	NM_004168.2	50	tCc/tTc																																																																														
SDHA	6389	MSKCC	GRCh37	5	223664	223664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			690	37	365	0	ENST00000264932.6:c.131C>T	p.Ser44Phe	p.S44F	ENST00000264932	NM_004168.2	44	tCt/tTt																																																																														
SDHA	6389	MSKCC	GRCh37	5	224491	224491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			221	14	122	1	ENST00000264932.6:c.167C>T	p.Pro56Leu	p.P56L	ENST00000264932	NM_004168.2	56	cCa/cTa																																																																														
SDHA	6389	MSKCC	GRCh37	5	224617	224617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			543	30	330	0	ENST00000264932.6:c.293C>T	p.Ser98Leu	p.S98L	ENST00000264932	NM_004168.2	98	tCa/tTa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961567	41961567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			515	36	418	0	ENST00000219905.7:c.475C>T	p.His159Tyr	p.H159Y	ENST00000219905	NM_001164273.1	159	Cat/Tat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390914	89390914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			674	293	266	0	ENST00000336596.2:c.980C>G	p.Ser327Cys	p.S327C	ENST00000336596	NM_005233.5	327	tCt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	37	367	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	8	279	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	338	481	0	ENST00000263967.3:c.278G>T	p.Arg93Leu	p.R93L	ENST00000263967	NM_006218.2	93	cGg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112173669	112173670	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	26	261	0	ENST00000257430.4:c.2379_2380del	p.Tyr796TrpfsTer2	p.Y796Wfs*2	ENST00000257430	NM_000038.5	793	cAA/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	73	604	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976706	2976706	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1044557293		P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	31	430	4	ENST00000396946.4:c.1306C>T	p.Arg436Trp	p.R436W	ENST00000396946	NM_032415.4	436	Cgg/Tgg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243776973	243776973	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	45	444	0	ENST00000263826.5:c.696G>T	p.Glu232Asp	p.E232D	ENST00000263826	NM_005465.4	232	gaG/gaT																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31390227	31390227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	42	465	0	ENST00000328111.2:c.2182G>A	p.Ala728Thr	p.A728T	ENST00000328111	NM_006892.3	728	Gct/Act																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526730	106526730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	23	252	0	ENST00000359195.3:c.3023A>G	p.Lys1008Arg	p.K1008R	ENST00000359195	NM_002649.2	1008	aAa/aGa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	165	324	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																														
RB1	5925	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	125	279	0	ENST00000267163.4:c.1959del	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	150	361	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	229	662	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593618	55593662	+	inframe_deletion	In_Frame_Del	DEL	GAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTT	GAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTT	-			P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	164	373	0	ENST00000288135.5:c.1684_1728del	p.Glu562_Leu576del	p.E562_L576del	ENST00000288135	NM_000222.2	562	GAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTT/-																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	214	550	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467748	50467748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	195	501	0	ENST00000331340.3:c.983G>A	p.Arg328His	p.R328H	ENST00000331340	NM_006060.4	328	cGc/cAc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630446	47630446	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			149	247	731	0	ENST00000233146.2:c.119del	p.Gly40AlafsTer24	p.G40Afs*24	ENST00000233146	NM_000251.2	39	cGg/cg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78867626	78867626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781190662		P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	275	607	1	ENST00000306801.3:c.2362C>T	p.Arg788Cys	p.R788C	ENST00000306801	NM_020761.2	788	Cgc/Tgc																																																																														
WT1	7490	MSKCC	GRCh37	11	32410704	32410704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139893274		P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	156	399	0	ENST00000332351.3:c.1454G>A	p.Arg485Gln	p.R485Q	ENST00000332351	NM_024426.4	485	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923722	72923722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1169589589		P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	242	588	1	ENST00000268489.5:c.3356G>A	p.Arg1119Gln	p.R1119Q	ENST00000268489	NM_006885.3	1119	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425430	49425430	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778418522		P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	241	720	2	ENST00000301067.7:c.13058C>T	p.Pro4353Leu	p.P4353L	ENST00000301067	NM_003482.3	4353	cCg/cTg																																																																														
CDK4	1019	MSKCC	GRCh37	12	58144445	58144445	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754423955		P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	120	256	0	ENST00000257904.6:c.626G>A	p.Arg209His	p.R209H	ENST00000257904	NM_000075.3	209	cGt/cAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808000	3808000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	183	400	0	ENST00000262367.5:c.3419G>A	p.Arg1140Gln	p.R1140Q	ENST00000262367	NM_004380.2	1140	cGg/cAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222891	5222891	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	244	560	0	ENST00000357368.4:c.2912A>G	p.Glu971Gly	p.E971G	ENST00000357368	NM_002850.3	971	gAg/gGg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500992	8500992	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029072-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	150	321	1	ENST00000356435.5:c.1890G>A	p.Trp630Ter	p.W630*	ENST00000356435		630	tgG/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	93	275	0				ENST00000310581	NM_198253.2																																																																																
NTRK2	4915	MSKCC	GRCh37	9	87570353	87570353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	84	623	0	ENST00000277120.3:c.2093G>A	p.Cys698Tyr	p.C698Y	ENST00000277120		698	tGc/tAc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9781554	9781554	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	244	631	3	ENST00000377346.4:c.1864G>T	p.Glu622Ter	p.E622*	ENST00000377346	NM_005026.3	622	Gag/Tag																																																																														
PARP1	142	MSKCC	GRCh37	1	226573318	226573318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	206	527	0	ENST00000366794.5:c.898G>T	p.Gly300Cys	p.G300C	ENST00000366794	NM_001618.3	300	Ggt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	216	518	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56867207	56867208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	250	604	0	ENST00000308159.5:c.1428dup	p.Ala477CysfsTer22	p.A477Cfs*22	ENST00000308159	NM_014669.4	476	gtt/gTtt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953188	17953188	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1370621788		P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	263	550	0	ENST00000458235.1:c.798C>A	p.Asp266Glu	p.D266E	ENST00000458235	NM_000215.3	266	gaC/gaA																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	154	343	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42848529	42848529	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	171	417	0	ENST00000398585.3:c.813del	p.Ala272GlnfsTer8	p.A272Qfs*8	ENST00000398585	NM_001135099.1	271	aaA/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	225	563	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112179371	112179371	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	213	446	0	ENST00000257430.4:c.8080A>C	p.Ile2694Leu	p.I2694L	ENST00000257430	NM_000038.5	2694	Att/Ctt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38282200	38282200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	216	616	2	ENST00000425967.3:c.856C>T	p.Pro286Ser	p.P286S	ENST00000425967	NM_001174067.1	286	Ccc/Tcc																																																																														
SYK	6850	MSKCC	GRCh37	9	93650795	93650795	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	144	324	0	ENST00000375746.1:c.1723-2A>G		p.X575_splice	ENST00000375746	NM_001174167.1	575																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128434668	128434668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	334	752	2	ENST00000265960.3:c.186G>T	p.Gln62His	p.Q62H	ENST00000265960	NM_001006617.1	62	caG/caT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038723	47038723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	248	664	0	ENST00000329236.7:c.499G>T	p.Glu167Ter	p.E167*	ENST00000329236	NM_001204466.1	167	Gag/Tag																																																																														
VHL	7428	MSKCC	GRCh37	3	10191479	10191479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	38	468	0	ENST00000256474.2:c.472C>G	p.Leu158Val	p.L158V	ENST00000256474	NM_000551.3	158	Ctg/Gtg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563416	21563431	+	frameshift_variant	Frame_Shift_Del	DEL	GTCACTGGGGTTGGCA	GTCACTGGGGTTGGCA	-			P-0039504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	53	1103	0	ENST00000382592.4:c.488_503del	p.Met163SerfsTer19	p.M163Sfs*19	ENST00000382592	NM_014572.2	163	aTGCCAACCCCAGTGACg/ag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165363	47165363	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	29	398	0	ENST00000409792.3:c.763A>T	p.Lys255Ter	p.K255*	ENST00000409792	NM_014159.6	255	Aag/Tag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53241070	53241070	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	53	361	0	ENST00000375401.3:c.1141G>T	p.Glu381Ter	p.E381*	ENST00000375401	NM_004187.3	381	Gaa/Taa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073509	8073509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	65	431	0	ENST00000377482.5:c.1150G>T	p.Glu384Ter	p.E384*	ENST00000377482	NM_018948.3	384	Gaa/Taa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237633	16237633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	14	405	0	ENST00000375759.3:c.1080G>T	p.Lys360Asn	p.K360N	ENST00000375759	NM_015001.2	360	aaG/aaT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264345	16264345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	136	636	0	ENST00000375759.3:c.10548G>T	p.Lys3516Asn	p.K3516N	ENST00000375759	NM_015001.2	3516	aaG/aaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057932	27057932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	87	559	0	ENST00000324856.7:c.1640G>A	p.Ser547Asn	p.S547N	ENST00000324856	NM_006015.4	547	aGc/aAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097631	27097631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	29	495	0	ENST00000324856.7:c.3220C>T	p.Arg1074Trp	p.R1074W	ENST00000324856	NM_006015.4	1074	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101130	27101130	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs779806180		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	97	721	1	ENST00000324856.7:c.4412A>C	p.Asn1471Thr	p.N1471T	ENST00000324856	NM_006015.4	1471	aAt/aCt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932148	36932148	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	75	634	0	ENST00000361632.4:c.2321A>G	p.Gln774Arg	p.Q774R	ENST00000361632		774	cAg/cGg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937198	36937198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	61	779	0	ENST00000361632.4:c.1121C>A	p.Ser374Tyr	p.S374Y	ENST00000361632		374	tCt/tAt																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39305238	39305238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs890472037		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	51	474	0	ENST00000373001.3:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000373001	NM_022157.3	396	cGa/cAa																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39317430	39317430	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	35	415	0	ENST00000373001.3:c.757-1G>T		p.X253_splice	ENST00000373001	NM_022157.3	253																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46733154	46733154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	126	445	0	ENST00000371975.4:c.915G>T	p.Glu305Asp	p.E305D	ENST00000371975	NM_003579.3	305	gaG/gaT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466316	120466316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	30	465	0	ENST00000256646.2:c.4803G>T	p.Lys1601Asn	p.K1601N	ENST00000256646	NM_024408.3	1601	aaG/aaT																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834155	156834155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	126	749	1	ENST00000524377.1:c.222G>T	p.Glu74Asp	p.E74D	ENST00000524377	NM_002529.3	74	gaG/gaT																																																																														
DDR2	4921	MSKCC	GRCh37	1	162737052	162737052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765973930		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	88	437	0	ENST00000367921.3:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000367921	NM_006182.2	399	cGg/cAg																																																																														
NUF2	83540	MSKCC	GRCh37	1	163317623	163317623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747173543		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	47	330	1	ENST00000271452.3:c.1019C>T	p.Ser340Leu	p.S340L	ENST00000271452	NM_145697.2	340	tCg/tTg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193094336	193094336	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886041158		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	40	337	0	ENST00000367435.3:c.226C>T	p.Arg76Ter	p.R76*	ENST00000367435	NM_024529.4	76	Cga/Tga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193116996	193116996	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	40	265	0	ENST00000367435.3:c.730-1G>T		p.X244_splice	ENST00000367435	NM_024529.4	244																																																																															
MDM4	4194	MSKCC	GRCh37	1	204512067	204512067	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	10	228	0	ENST00000367182.3:c.667A>G	p.Asn223Asp	p.N223D	ENST00000367182	NM_001278516.1	223	Aat/Gat																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612948	228612948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750781461		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	57	451	1	ENST00000366696.1:c.79C>T	p.Arg27Cys	p.R27C	ENST00000366696	NM_003493.2	27	Cgc/Tgc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243675629	243675629	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	10	214	0	ENST00000263826.5:c.1351A>C	p.Lys451Gln	p.K451Q	ENST00000263826	NM_005465.4	451	Aaa/Caa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243801007	243801007	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	52	423	0	ENST00000263826.5:c.467A>C	p.Lys156Thr	p.K156T	ENST00000263826	NM_005465.4	156	aAa/aCa																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246490592	246490592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	18	516	0	ENST00000388985.4:c.442G>T	p.Val148Leu	p.V148L	ENST00000388985		148	Gta/Tta																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246490612	246490612	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	15	450	0	ENST00000388985.4:c.422A>C	p.Lys141Thr	p.K141T	ENST00000388985		141	aAa/aCa																																																																														
RET	5979	MSKCC	GRCh37	10	43609030	43609030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	23	634	1	ENST00000355710.3:c.1786C>T	p.Pro596Ser	p.P596S	ENST00000355710	NM_020975.4	596	Cct/Tct																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851560	63851560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	132	572	0	ENST00000279873.7:c.2338C>T	p.Arg780Ter	p.R780*	ENST00000279873	NM_032199.2	780	Cga/Tga																																																																														
TET1	80312	MSKCC	GRCh37	10	70332415	70332415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1419371452		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	40	584	0	ENST00000373644.4:c.320G>A	p.Arg107Gln	p.R107Q	ENST00000373644	NM_030625.2	107	cGa/cAa																																																																														
TET1	80312	MSKCC	GRCh37	10	70405915	70405915	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1430579993		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	89	524	0	ENST00000373644.4:c.3429G>T	p.Lys1143Asn	p.K1143N	ENST00000373644	NM_030625.2	1143	aaG/aaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	38	182	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	78	445	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112764488	112764488	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1219277268		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	51	408	0	ENST00000369452.4:c.1097G>A	p.Arg366Gln	p.R366Q	ENST00000369452	NM_007373.3	366	cGa/cAa																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771387	112771387	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	22	558	0	ENST00000369452.4:c.1560A>C	p.Glu520Asp	p.E520D	ENST00000369452	NM_007373.3	520	gaA/gaC																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248553	8248553	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757437334		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	225	699	1	ENST00000335790.3:c.334G>A	p.Asp112Asn	p.D112N	ENST00000335790	NM_002315.2	112	Gac/Aac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940539	71940539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	50	623	0	ENST00000298229.2:c.690G>T	p.Glu230Asp	p.E230D	ENST00000298229	NM_001567.3	230	gaG/gaT																																																																														
EED	8726	MSKCC	GRCh37	11	85975288	85975288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	19	279	0	ENST00000263360.6:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000263360	NM_003797.3	237	Gat/Tat																																																																														
SESN3	143686	MSKCC	GRCh37	11	94911895	94911895	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	23	504	0	ENST00000536441.1:c.1035T>G	p.His345Gln	p.H345Q	ENST00000536441	NM_144665.3	345	caT/caG																																																																														
BIRC3	330	MSKCC	GRCh37	11	102206852	102206852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	49	343	0	ENST00000263464.3:c.1480G>T	p.Glu494Ter	p.E494*	ENST00000263464	NM_001165.4	494	Gaa/Taa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102207816	102207816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	42	285	0	ENST00000263464.3:c.1798C>T	p.Arg600Cys	p.R600C	ENST00000263464	NM_001165.4	600	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108115627	108115627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	13	379	0	ENST00000278616.4:c.775C>A	p.Leu259Ile	p.L259I	ENST00000278616	NM_000051.3	259	Ctt/Att																																																																														
ATM	472	MSKCC	GRCh37	11	108121669	108121669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750280306		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	18	423	1	ENST00000278616.4:c.1477C>T	p.Arg493Cys	p.R493C	ENST00000278616	NM_000051.3	493	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108163351	108163351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	30	406	0	ENST00000278616.4:c.4442C>A	p.Ser1481Tyr	p.S1481Y	ENST00000278616	NM_000051.3	1481	tCt/tAt																																																																														
ATM	472	MSKCC	GRCh37	11	108172385	108172385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs764389018		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	32	329	0	ENST00000278616.4:c.5188C>T	p.Arg1730Ter	p.R1730*	ENST00000278616	NM_000051.3	1730	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108188112	108188112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	35	244	0	ENST00000278616.4:c.6211T>G	p.Leu2071Val	p.L2071V	ENST00000278616	NM_000051.3	2071	Ttg/Gtg																																																																														
ATM	472	MSKCC	GRCh37	11	108214089	108214089	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	21	281	0	ENST00000278616.4:c.8409G>T	p.Lys2803Asn	p.K2803N	ENST00000278616	NM_000051.3	2803	aaG/aaT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118355622	118355622	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	25	537	0	ENST00000534358.1:c.4264A>C	p.Ile1422Leu	p.I1422L	ENST00000534358	NM_005933.3	1422	Atc/Ctc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376449	118376449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	12	435	0	ENST00000534358.1:c.9842C>A	p.Ser3281Tyr	p.S3281Y	ENST00000534358	NM_005933.3	3281	tCt/tAt																																																																														
CBL	867	MSKCC	GRCh37	11	119146754	119146754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	91	472	0	ENST00000264033.4:c.917G>T	p.Gly306Val	p.G306V	ENST00000264033	NM_005188.3	306	gGg/gTg																																																																														
CBL	867	MSKCC	GRCh37	11	119169179	119169179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150811339		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	95	463	1	ENST00000264033.4:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000264033	NM_005188.3	788	cGa/cAa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	417087	417087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	38	311	0	ENST00000399788.2:c.3463G>A	p.Val1155Met	p.V1155M	ENST00000399788	NM_001042603.1	1155	Gtg/Atg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	441022	441022	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	104	377	0	ENST00000399788.2:c.1736A>C	p.Asn579Thr	p.N579T	ENST00000399788	NM_001042603.1	579	aAc/aCc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	461472	461472	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	13	383	0	ENST00000399788.2:c.1048G>T	p.Glu350Ter	p.E350*	ENST00000399788	NM_001042603.1	350	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	475146	475146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	17	506	0	ENST00000399788.2:c.491G>T	p.Arg164Ile	p.R164I	ENST00000399788	NM_001042603.1	164	aGa/aTa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	495100	495100	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374793802		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	58	342	0	ENST00000399788.2:c.206G>A	p.Arg69His	p.R69H	ENST00000399788	NM_001042603.1	69	cGt/cAt																																																																														
CCND2	894	MSKCC	GRCh37	12	4385236	4385236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	50	493	0	ENST00000261254.3:c.261C>A	p.Phe87Leu	p.F87L	ENST00000261254	NM_001759.3	87	ttC/ttA																																																																														
CCND2	894	MSKCC	GRCh37	12	4387995	4387995	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	30	509	0	ENST00000261254.3:c.481G>T	p.Glu161Ter	p.E161*	ENST00000261254	NM_001759.3	161	Gag/Tag																																																																														
RECQL	5965	MSKCC	GRCh37	12	21627847	21627847	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	42	546	0	ENST00000421138.2:c.1283C>A	p.Ser428Ter	p.S428*	ENST00000421138		428	tCa/tAa																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945093	31945093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	118	632	0	ENST00000340398.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000340398	NM_001013699.2	3	cGa/cAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211548	46211548	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	19	291	0	ENST00000334344.6:c.514G>T	p.Glu172Ter	p.E172*	ENST00000334344	NM_152641.2	172	Gaa/Taa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244742	46244742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	23	548	0	ENST00000334344.6:c.2836A>G	p.Ile946Val	p.I946V	ENST00000334344	NM_152641.2	946	Att/Gtt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245343	46245343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	50	503	0	ENST00000334344.6:c.3437C>T	p.Ser1146Leu	p.S1146L	ENST00000334344	NM_152641.2	1146	tCg/tTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287256	46287256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	20	462	0	ENST00000334344.6:c.5201T>C	p.Val1734Ala	p.V1734A	ENST00000334344	NM_152641.2	1734	gTg/gCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416114	49416114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	42	463	1	ENST00000301067.7:c.16361G>A	p.Arg5454Gln	p.R5454Q	ENST00000301067	NM_003482.3	5454	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438728	49438728	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1290729871		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	70	692	0	ENST00000301067.7:c.4762G>A	p.Glu1588Lys	p.E1588K	ENST00000301067	NM_003482.3	1588	Gaa/Aaa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860063	57860063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	84	788	0	ENST00000228682.2:c.803T>C	p.Phe268Ser	p.F268S	ENST00000228682	NM_005269.2	268	tTc/tCc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864595	57864595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	66	845	0	ENST00000228682.2:c.2072G>T	p.Ser691Ile	p.S691I	ENST00000228682	NM_005269.2	691	aGc/aTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865314	57865314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	80	776	0	ENST00000228682.2:c.2791C>A	p.Leu931Met	p.L931M	ENST00000228682	NM_005269.2	931	Ctg/Atg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111886044	111886044	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769682050		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	97	560	0	ENST00000341259.2:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000341259	NM_005475.2	556	Gaa/Aaa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117457	115117457	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	24	333	0	ENST00000257566.3:c.718-1G>T		p.X240_splice	ENST00000257566	NM_016569.3	240																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121416737	121416737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	284	789	0	ENST00000257555.6:c.166G>A	p.Glu56Lys	p.E56K	ENST00000257555		56	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133212602	133212602	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	15	432	0	ENST00000320574.5:c.5687C>A	p.Ser1896Ter	p.S1896*	ENST00000320574	NM_006231.2	1896	tCa/tAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519943		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	159	498	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557476	21557476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	43	594	0	ENST00000382592.4:c.2369G>A	p.Arg790Gln	p.R790Q	ENST00000382592	NM_014572.2	790	cGa/cAa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26978210	26978210	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776727772		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	24	465	0	ENST00000381527.3:c.1387C>T	p.Arg463Trp	p.R463W	ENST00000381527	NM_001260.1	463	Cgg/Tgg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589808	28589808	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568745490		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	92	482	0	ENST00000241453.7:c.2572G>A	p.Glu858Lys	p.E858K	ENST00000241453	NM_004119.2	858	Gaa/Aaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608072	28608072	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	45	534	0	ENST00000241453.7:c.1894A>C	p.Ile632Leu	p.I632L	ENST00000241453	NM_004119.2	632	Att/Ctt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608234	28608234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	13	497	0	ENST00000241453.7:c.1822G>T	p.Glu608Ter	p.E608*	ENST00000241453	NM_004119.2	608	Gaa/Taa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611324	28611324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	19	381	0	ENST00000241453.7:c.1307G>T	p.Arg436Ile	p.R436I	ENST00000241453	NM_004119.2	436	aGa/aTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893334	32893334	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	22	343	0	ENST00000380152.3:c.188A>C	p.Lys63Thr	p.K63T	ENST00000380152		63	aAa/aCa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32899248	32899248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375125172		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	15	250	0	ENST00000380152.3:c.352C>T	p.Arg118Cys	p.R118C	ENST00000380152		118	Cgc/Tgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906567	32906567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	27	337	0	ENST00000380152.3:c.952A>C	p.Lys318Gln	p.K318Q	ENST00000380152		318	Aaa/Caa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906894	32906894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	11	445	1	ENST00000380152.3:c.1279G>T	p.Asp427Tyr	p.D427Y	ENST00000380152		427	Gac/Tac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906944	32906944	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs73169186		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	15	374	0	ENST00000380152.3:c.1329G>T	p.Glu443Asp	p.E443D	ENST00000380152		443	gaG/gaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910943	32910943	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs767686668		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	23	383	0	ENST00000380152.3:c.2451G>T	p.Lys817Asn	p.K817N	ENST00000380152		817	aaG/aaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914137	32914137	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs80358785		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	19	471	0	ENST00000380152.3:c.5645C>A	p.Ser1882Ter	p.S1882*	ENST00000380152		1882	tCa/tAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80359104		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	40	318	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134045	41134045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	49	468	0	ENST00000379561.5:c.1583C>A	p.Ala528Asp	p.A528D	ENST00000379561	NM_002015.3	528	gCt/gAt																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134459	41134459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756553520		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	127	505	0	ENST00000379561.5:c.1169C>T	p.Ser390Leu	p.S390L	ENST00000379561	NM_002015.3	390	tCg/tTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48942686	48942686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767011440		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	38	272	0	ENST00000267163.4:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000267163	NM_000321.2	358	cGa/cAa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	55	228	0	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347871	73347871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	12	272	0	ENST00000377767.4:c.1190G>T	p.Arg397Ile	p.R397I	ENST00000377767	NM_014953.3	397	aGa/aTa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	54	285	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73351596	73351596	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760670933		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	12	231	0	ENST00000377767.4:c.616G>A	p.Glu206Lys	p.E206K	ENST00000377767	NM_014953.3	206	Gaa/Aaa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504585	103504585	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747957305		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	29	245	0	ENST00000355739.4:c.206G>A	p.Arg69Gln	p.R69Q	ENST00000355739	NM_000123.3	69	cGa/cAa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515141	103515141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770246574		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	16	297	0	ENST00000355739.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000355739	NM_000123.3	548	Gaa/Aaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609532	81609532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	30	514	0	ENST00000298171.2:c.1130C>A	p.Thr377Asn	p.T377N	ENST00000298171	NM_000369.2	377	aCt/aAt																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675139	40675139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	28	787	0	ENST00000249776.8:c.103C>A	p.Leu35Ile	p.L35I	ENST00000249776	NM_033286.3	35	Cta/Ata																																																																														
MGA	23269	MSKCC	GRCh37	15	41961867	41961867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	12	350	0	ENST00000219905.7:c.775C>T	p.Arg259Trp	p.R259W	ENST00000219905	NM_001164273.1	259	Cgg/Tgg																																																																														
MGA	23269	MSKCC	GRCh37	15	41988382	41988382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774833703		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	73	526	1	ENST00000219905.7:c.1174G>A	p.Glu392Lys	p.E392K	ENST00000219905	NM_001164273.1	392	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	42019410	42019410	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs528009988		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	35	481	0	ENST00000219905.7:c.3463C>T	p.Arg1155Ter	p.R1155*	ENST00000219905	NM_001164273.1	1155	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42041074	42041074	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	47	668	1	ENST00000219905.7:c.5452C>T	p.Arg1818Ter	p.R1818*	ENST00000219905	NM_001164273.1	1818	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42054485	42054485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	18	355	0	ENST00000219905.7:c.7669G>T	p.Asp2557Tyr	p.D2557Y	ENST00000219905	NM_001164273.1	2557	Gat/Tat																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708548	43708548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	26	608	0	ENST00000382044.4:c.4748G>T	p.Arg1583Ile	p.R1583I	ENST00000382044	NM_001141980.1	1583	aGa/aTa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724829	43724829	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	89	584	0	ENST00000382044.4:c.3238G>T	p.Glu1080Ter	p.E1080*	ENST00000382044	NM_001141980.1	1080	Gaa/Taa																																																																														
B2M	567	MSKCC	GRCh37	15	45007719	45007719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	15	325	2	ENST00000558401.1:c.166G>T	p.Glu56Ter	p.E56*	ENST00000558401	NM_004048.2	56	Gaa/Taa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420174	88420174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	35	420	0	ENST00000360948.2:c.2512C>A	p.Leu838Ile	p.L838I	ENST00000360948	NM_001012338.2	838	Ctt/Att																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726694	88726694	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766899479		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	121	456	0	ENST00000360948.2:c.350G>A	p.Ser117Asn	p.S117N	ENST00000360948	NM_001012338.2	117	aGc/aAc																																																																														
BLM	641	MSKCC	GRCh37	15	91292703	91292703	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746195311		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	11	472	0	ENST00000355112.3:c.205G>A	p.Glu69Lys	p.E69K	ENST00000355112	NM_000057.2	69	Gaa/Aaa																																																																														
BLM	641	MSKCC	GRCh37	15	91293078	91293078	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	52	421	0	ENST00000355112.3:c.580T>G	p.Phe194Val	p.F194V	ENST00000355112	NM_000057.2	194	Ttt/Gtt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99459919	99459919	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	66	422	0	ENST00000268035.6:c.2015A>T	p.Lys672Met	p.K672M	ENST00000268035	NM_000875.3	672	aAg/aTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465506	99465506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	141	514	0	ENST00000268035.6:c.2331C>A	p.Phe777Leu	p.F777L	ENST00000268035	NM_000875.3	777	ttC/ttA																																																																														
TSC2	7249	MSKCC	GRCh37	16	2098664	2098664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	42	573	0	ENST00000219476.3:c.48G>T	p.Lys16Asn	p.K16N	ENST00000219476	NM_000548.3	16	aaG/aaT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788637	3788637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	94	394	0	ENST00000262367.5:c.4317C>A	p.Phe1439Leu	p.F1439L	ENST00000262367	NM_004380.2	1439	ttC/ttA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807901	3807901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	76	503	2	ENST00000262367.5:c.3518G>A	p.Arg1173Gln	p.R1173Q	ENST00000262367	NM_004380.2	1173	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862740	9862740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs796052564		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	91	564	0	ENST00000330684.3:c.2563G>A	p.Asp855Asn	p.D855N	ENST00000330684	NM_001134407.1	855	Gac/Aac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916214	9916214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	20	497	0	ENST00000330684.3:c.2075G>A	p.Arg692Lys	p.R692K	ENST00000330684	NM_001134407.1	692	aGa/aAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923313	9923313	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	43	518	0	ENST00000330684.3:c.1974T>G	p.Phe658Leu	p.F658L	ENST00000330684	NM_001134407.1	658	ttT/ttG																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029332	14029332	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866657450		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	26	375	1	ENST00000311895.7:c.1543C>T	p.Arg515Cys	p.R515C	ENST00000311895	NM_005236.2	515	Cgt/Tgt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646423	23646423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	50	566	0	ENST00000261584.4:c.1444C>A	p.Leu482Ile	p.L482I	ENST00000261584	NM_024675.3	482	Ctc/Atc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646683	23646683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	12	505	0	ENST00000261584.4:c.1184C>A	p.Ser395Tyr	p.S395Y	ENST00000261584	NM_024675.3	395	tCt/tAt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647199	23647199	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	79	709	0	ENST00000261584.4:c.668T>G	p.Ile223Ser	p.I223S	ENST00000261584	NM_024675.3	223	aTt/aGt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50826550	50826550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	13	266	0	ENST00000398568.2:c.2275G>T	p.Asp759Tyr	p.D759Y	ENST00000398568	NM_001042412.1	759	Gac/Tac																																																																														
CDH1	999	MSKCC	GRCh37	16	68844172	68844172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	55	654	0	ENST00000261769.5:c.760G>A	p.Asp254Asn	p.D254N	ENST00000261769	NM_004360.3	254	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827367	72827367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368568803		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	88	788	0	ENST00000268489.5:c.9214G>A	p.Val3072Ile	p.V3072I	ENST00000268489	NM_006885.3	3072	Gta/Ata																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828578	72828578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1199271359		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	26	718	0	ENST00000268489.5:c.8003G>A	p.Arg2668Gln	p.R2668Q	ENST00000268489	NM_006885.3	2668	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829200	72829200	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779491169		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	234	658	0	ENST00000268489.5:c.7381G>A	p.Glu2461Lys	p.E2461K	ENST00000268489	NM_006885.3	2461	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831935	72831935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	19	755	0	ENST00000268489.5:c.4646T>C	p.Val1549Ala	p.V1549A	ENST00000268489	NM_006885.3	1549	gTc/gCc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81960766	81960766	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753762025		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	34	436	0	ENST00000359376.3:c.2497G>A	p.Glu833Lys	p.E833K	ENST00000359376	NM_002661.3	833	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347939	89347939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	53	808	3	ENST00000301030.4:c.5011G>A	p.Ala1671Thr	p.A1671T	ENST00000301030	NM_001256183.1	1671	Gca/Aca																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371709	89371709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1010844836		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	89	651	0	ENST00000301030.4:c.131G>A	p.Arg44His	p.R44H	ENST00000301030	NM_001256183.1	44	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	29	750	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12013707	12013707	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	28	334	0	ENST00000353533.5:c.649A>C	p.Asn217His	p.N217H	ENST00000353533	NM_003010.3	217	Aac/Cac																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15964768	15964768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1189783787		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	36	569	0	ENST00000268712.3:c.5828C>T	p.Ser1943Leu	p.S1943L	ENST00000268712	NM_006311.3	1943	tCg/tTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16052790	16052790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	73	364	0	ENST00000268712.3:c.884G>T	p.Arg295Ile	p.R295I	ENST00000268712	NM_006311.3	295	aGa/aTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29552212	29552212	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	63	389	1	ENST00000358273.4:c.1945G>T	p.Glu649Ter	p.E649*	ENST00000358273	NM_001042492.2	649	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29560143	29560143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	15	296	0	ENST00000358273.4:c.3620G>T	p.Arg1207Ile	p.R1207I	ENST00000358273	NM_001042492.2	1207	aGa/aTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202457		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	62	321	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29684041	29684041	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	26	521	0	ENST00000358273.4:c.7802C>A	p.Ser2601Ter	p.S2601*	ENST00000358273	NM_001042492.2	2601	tCa/tAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627509	37627509	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs371684674		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	84	572	0	ENST00000447079.4:c.1424C>A	p.Ser475Tyr	p.S475Y	ENST00000447079	NM_015083.1	475	tCt/tAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883623	37883623	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1038581447		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	78	795	0	ENST00000269571.5:c.3235G>A	p.Glu1079Lys	p.E1079K	ENST00000269571		1079	Gaa/Aaa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40854906	40854906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	58	490	0	ENST00000428826.2:c.2172C>A	p.Phe724Leu	p.F724L	ENST00000428826		724	ttC/ttA																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234450	41234450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs4986849		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	45	461	1	ENST00000357654.3:c.4328G>A	p.Arg1443Gln	p.R1443Q	ENST00000357654	NM_007294.3	1443	cGa/cAa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256263	41256263	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	11	296	0	ENST00000357654.3:c.317A>C	p.Asn106Thr	p.N106T	ENST00000357654	NM_007294.3	106	aAt/aCt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774119	56774119	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	62	427	0	ENST00000337432.4:c.470T>G	p.Phe157Cys	p.F157C	ENST00000337432	NM_058216.2	157	tTt/tGt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740632	58740632	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs202221678		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	21	582	0	ENST00000305921.3:c.1537T>G	p.Leu513Val	p.L513V	ENST00000305921	NM_003620.3	513	Ttg/Gtg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763253	59763253	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	15	562	0	ENST00000259008.2:c.2849A>C	p.Lys950Thr	p.K950T	ENST00000259008	NM_032043.2	950	aAa/aCa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858338	59858338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	20	396	0	ENST00000259008.2:c.1657C>A	p.Gln553Lys	p.Q553K	ENST00000259008	NM_032043.2	553	Caa/Aaa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59878821	59878821	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	21	230	0	ENST00000259008.2:c.933T>G	p.Tyr311Ter	p.Y311*	ENST00000259008	NM_032043.2	311	taT/taG																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59938814	59938814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	26	354	0	ENST00000259008.2:c.87G>T	p.Met29Ile	p.M29I	ENST00000259008	NM_032043.2	29	atG/atT																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39550298	39550298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749558522		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	18	210	0	ENST00000262039.4:c.409C>T	p.Arg137Cys	p.R137C	ENST00000262039	NM_002647.2	137	Cgc/Tgc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45394784	45394784	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	32	307	0	ENST00000262160.6:c.565G>T	p.Glu189Ter	p.E189*	ENST00000262160	NM_005901.5	189	Gaa/Taa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56381317	56381317	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	26	145	0	ENST00000348428.3:c.961G>T	p.Glu321Ter	p.E321*	ENST00000348428	NM_006785.3	321	Gaa/Taa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231599	5231599	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	52	257	0	ENST00000357368.4:c.1877A>C	p.Lys626Thr	p.K626T	ENST00000357368	NM_002850.3	626	aAa/aCa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291465	10291465	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	45	580	0	ENST00000340748.4:c.214G>T	p.Glu72Ter	p.E72*	ENST00000340748		72	Gaa/Taa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15365013	15365013	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1453756538		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	194	592	1	ENST00000263377.2:c.2108C>T	p.Ser703Leu	p.S703L	ENST00000263377	NM_058243.2	703	tCg/tTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945804	17945804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750102955		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	36	716	0	ENST00000458235.1:c.2056G>A	p.Asp686Asn	p.D686N	ENST00000458235	NM_000215.3	686	Gac/Aac																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976416	18976416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	290	936	0	ENST00000262803.5:c.3066G>T	p.Lys1022Asn	p.K1022N	ENST00000262803	NM_002911.3	1022	aaG/aaT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221273	36221273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	86	772	0	ENST00000222270.7:c.5107C>A	p.Leu1703Ile	p.L1703I	ENST00000222270	NM_014727.1	1703	Ctc/Atc																																																																														
ERF	2077	MSKCC	GRCh37	19	42754568	42754568	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	73	808	0	ENST00000222329.4:c.172A>G	p.Lys58Glu	p.K58E	ENST00000222329	NM_006494.2	58	Aaa/Gaa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085677	16085677	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779959007		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	47	663	0	ENST00000281043.3:c.853C>T	p.Arg285Trp	p.R285W	ENST00000281043	NM_005378.4	285	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	29430136	29430136	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs74716434		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	23	409	0	ENST00000389048.3:c.3839C>T	p.Ala1280Val	p.A1280V	ENST00000389048	NM_004304.4	1280	gCg/gTg																																																																														
ALK	238	MSKCC	GRCh37	2	29498090	29498090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	88	530	0	ENST00000389048.3:c.1916G>A	p.Ser639Asn	p.S639N	ENST00000389048	NM_004304.4	639	aGc/aAc																																																																														
ALK	238	MSKCC	GRCh37	2	29551311	29551311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	58	657	0	ENST00000389048.3:c.1319C>A	p.Ser440Tyr	p.S440Y	ENST00000389048	NM_004304.4	440	tCc/tAc																																																																														
ALK	238	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs865931787		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	86	544	0	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224414	39224414	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	64	460	0	ENST00000402219.2:c.2944C>T	p.Arg982Ter	p.R982*	ENST00000402219	NM_005633.3	982	Cga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026015	48026015	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765237563		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	16	354	0	ENST00000234420.5:c.893G>A	p.Arg298Gln	p.R298Q	ENST00000234420	NM_000179.2	298	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026290	48026290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147737737		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	39	317	0	ENST00000234420.5:c.1168G>A	p.Asp390Asn	p.D390N	ENST00000234420	NM_000179.2	390	Gat/Aat																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	15	536	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61724120	61724120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781425578		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	21	288	0	ENST00000401558.2:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000401558	NM_003400.3	261	cGa/cAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61761022	61761022	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	22	266	0	ENST00000401558.2:c.11T>G	p.Ile4Ser	p.I4S	ENST00000401558	NM_003400.3	4	aTt/aGt																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046440	128046440	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	14	297	0	ENST00000285398.2:c.823G>A	p.Glu275Lys	p.E275K	ENST00000285398	NM_000122.1	275	Gaa/Aaa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622630	158622630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	46	420	0	ENST00000263640.3:c.869C>T	p.Ser290Leu	p.S290L	ENST00000263640	NM_001105.4	290	tCg/tTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098957	178098957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	21	300	0	ENST00000397062.3:c.88C>T	p.Leu30Phe	p.L30F	ENST00000397062	NM_006164.4	30	Ctt/Ttt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198288690	198288690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	29	377	0	ENST00000335508.6:c.37G>A	p.Ala13Thr	p.A13T	ENST00000335508	NM_012433.2	13	Gca/Aca																																																																														
CASP8	841	MSKCC	GRCh37	2	202131364	202131364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	16	454	1	ENST00000358485.4:c.332G>T	p.Arg111Ile	p.R111I	ENST00000358485	NM_001080125.1	111	aGa/aTa																																																																														
CASP8	841	MSKCC	GRCh37	2	202131417	202131417	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	35	491	0	ENST00000358485.4:c.385A>C	p.Asn129His	p.N129H	ENST00000358485	NM_001080125.1	129	Aat/Cat																																																																														
CASP8	841	MSKCC	GRCh37	2	202137360	202137360	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	24	314	0	ENST00000358485.4:c.589-1G>T		p.X197_splice	ENST00000358485	NM_001080125.1	197																																																																															
CASP8	841	MSKCC	GRCh37	2	202149974	202149974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1301592633		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	40	630	0	ENST00000358485.4:c.1415G>A	p.Arg472Gln	p.R472Q	ENST00000358485	NM_001080125.1	472	cGa/cAa																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736158	204736158	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs963824682		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	35	344	0	ENST00000302823.3:c.515C>T	p.Ser172Leu	p.S172L	ENST00000302823	NM_005214.4	172	tCg/tTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530096	212530096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	34	278	2	ENST00000342788.4:c.1823C>T	p.Ala608Val	p.A608V	ENST00000342788	NM_005235.2	608	gCt/gTt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793223	242793223	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762704059		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	107	758	0	ENST00000334409.5:c.854C>T	p.Ser285Phe	p.S285F	ENST00000334409	NM_005018.2	285	tCt/tTt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31020765	31020765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	23	282	0	ENST00000375687.4:c.1062C>A	p.Phe354Leu	p.F354L	ENST00000375687	NM_015338.5	354	ttC/ttA																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31389107	31389107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749860839		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	100	464	0	ENST00000328111.2:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000328111	NM_006892.3	674	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730904	40730904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770182876		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	162	603	0	ENST00000373198.4:c.3631G>A	p.Glu1211Lys	p.E1211K	ENST00000373198	NM_133170.3	1211	Gag/Aag																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281770	46281770	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	45	606	0	ENST00000371998.3:c.4217A>G	p.Asn1406Ser	p.N1406S	ENST00000371998		1406	aAc/aGc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	19	553	2	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121349	29121349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	21	530	0	ENST00000328354.6:c.326T>C	p.Val109Ala	p.V109A	ENST00000328354	NM_007194.3	109	gTg/gCg																																																																														
EP300	2033	MSKCC	GRCh37	22	41521867	41521867	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	28	484	0	ENST00000263253.7:c.730-1G>A		p.X244_splice	ENST00000263253	NM_001429.3	244																																																																															
EP300	2033	MSKCC	GRCh37	22	41562619	41562619	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	13	395	0	ENST00000263253.7:c.3823T>G	p.Cys1275Gly	p.C1275G	ENST00000263253	NM_001429.3	1275	Tgt/Ggt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434252	12434252	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	11	322	0	ENST00000287820.6:c.619+1G>A		p.X207_splice	ENST00000287820	NM_015869.4	207																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691867	30691867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	30	314	0	ENST00000359013.4:c.444G>T	p.Met148Ile	p.M148I	ENST00000359013	NM_001024847.2	148	atG/atT																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090086	37090086	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63751310		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	72	459	0	ENST00000231790.2:c.1975C>T	p.Arg659Ter	p.R659*	ENST00000231790	NM_000249.3	659	Cga/Tga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098930	47098930	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	120	585	0	ENST00000409792.3:c.6344A>C	p.Lys2115Thr	p.K2115T	ENST00000409792	NM_014159.6	2115	aAa/aCa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103716	47103716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs981018402		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	88	404	0	ENST00000409792.3:c.6230G>A	p.Arg2077Gln	p.R2077Q	ENST00000409792	NM_014159.6	2077	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158238	47158238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	55	307	0	ENST00000409792.3:c.4461G>T	p.Lys1487Asn	p.K1487N	ENST00000409792	NM_014159.6	1487	aaG/aaT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162161	47162161	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147170912		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	13	417	1	ENST00000409792.3:c.3965G>A	p.Arg1322Gln	p.R1322Q	ENST00000409792	NM_014159.6	1322	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162311	47162311	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	17	370	0	ENST00000409792.3:c.3815A>C	p.Gln1272Pro	p.Q1272P	ENST00000409792	NM_014159.6	1272	cAg/cCg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49924860	49924860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	63	743	0	ENST00000296474.3:c.4083G>T	p.Met1361Ile	p.M1361I	ENST00000296474	NM_002447.2	1361	atG/atT																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940235	49940235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	92	739	0	ENST00000296474.3:c.808A>G	p.Thr270Ala	p.T270A	ENST00000296474	NM_002447.2	270	Aca/Gca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678780	52678780	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	27	253	1	ENST00000394830.3:c.839T>G	p.Phe280Cys	p.F280C	ENST00000394830	NM_018313.4	280	tTt/tGt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702632	52702632	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779102269		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	13	331	0	ENST00000394830.3:c.266C>A	p.Ser89Tyr	p.S89Y	ENST00000394830	NM_018313.4	89	tCt/tAt																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72866499	72866499	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs748068509		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	19	275	0	ENST00000325599.8:c.764A>C	p.Lys255Thr	p.K255T	ENST00000325599	NM_018130.2	255	aAa/aCa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89444986	89444986	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs764527197		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	46	329	0	ENST00000336596.2:c.1307-1G>A		p.X436_splice	ENST00000336596	NM_005233.5	436																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480508	89480508	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	14	257	0	ENST00000336596.2:c.2345G>T	p.Arg782Ile	p.R782I	ENST00000336596	NM_005233.5	782	aGa/aTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498444	89498444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	22	289	0	ENST00000336596.2:c.2416G>A	p.Asp806Asn	p.D806N	ENST00000336596	NM_005233.5	806	Gat/Aat																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670461	134670461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	27	554	0	ENST00000398015.3:c.372G>T	p.Lys124Asn	p.K124N	ENST00000398015	NM_004441.4	124	aaG/aaT																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670668	134670668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	98	615	0	ENST00000398015.3:c.579C>A	p.Phe193Leu	p.F193L	ENST00000398015	NM_004441.4	193	ttC/ttA																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825430	134825430	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	49	484	0	ENST00000398015.3:c.946G>T	p.Glu316Ter	p.E316*	ENST00000398015	NM_004441.4	316	Gaa/Taa																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664718	138664718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	35	165	0	ENST00000330315.3:c.847G>A	p.Ala283Thr	p.A283T	ENST00000330315	NM_023067.3	283	Gca/Aca																																																																														
ATR	545	MSKCC	GRCh37	3	142242845	142242845	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	54	378	0	ENST00000350721.4:c.4142T>G	p.Phe1381Cys	p.F1381C	ENST00000350721	NM_001184.3	1381	tTt/tGt																																																																														
ATR	545	MSKCC	GRCh37	3	142242899	142242899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750252420		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	77	450	0	ENST00000350721.4:c.4088C>T	p.Ala1363Val	p.A1363V	ENST00000350721	NM_001184.3	1363	gCg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	117	584	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921533	178921533	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1428379257		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	29	358	0	ENST00000263967.3:c.1015C>A	p.Leu339Ile	p.L339I	ENST00000263967	NM_006218.2	339	Ctt/Att																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937019	178937019	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	14	416	0	ENST00000263967.3:c.1700A>C	p.Lys567Thr	p.K567T	ENST00000263967	NM_006218.2	567	aAa/aCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947872	178947872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	14	320	0	ENST00000263967.3:c.2747G>A	p.Arg916His	p.R916H	ENST00000263967	NM_006218.2	916	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	22	389	0	ENST00000263967.3:c.3012G>T	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atT																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182681824	182681824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	25	392	0	ENST00000292782.4:c.234G>T	p.Glu78Asp	p.E78D	ENST00000292782	NM_020640.2	78	gaG/gaT																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186506913	186506913	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	11	202	0	ENST00000323963.5:c.1080-1G>T		p.X360_splice	ENST00000323963		360																																																																															
TP63	8626	MSKCC	GRCh37	3	189584500	189584500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	70	368	0	ENST00000264731.3:c.796C>T	p.Arg266Ter	p.R266*	ENST00000264731	NM_003722.4	266	Cga/Tga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801476	1801476	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200300532		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	79	859	0	ENST00000260795.2:c.382G>A	p.Ala128Thr	p.A128T	ENST00000260795		128	Gct/Act																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750610	41750610	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	51	496	1	ENST00000226382.2:c.18T>G	p.Tyr6Ter	p.Y6*	ENST00000226382	NM_003924.3	6	taT/taG																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146592	55146592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs555347387		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	24	429	0	ENST00000257290.5:c.2266G>A	p.Asp756Asn	p.D756N	ENST00000257290	NM_006206.4	756	Gac/Aac																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151567	55151567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	16	404	0	ENST00000257290.5:c.2353G>T	p.Asp785Tyr	p.D785Y	ENST00000257290	NM_006206.4	785	Gat/Tat																																																																														
KDR	3791	MSKCC	GRCh37	4	55987288	55987288	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	20	375	0	ENST00000263923.4:c.137A>C	p.Asn46Thr	p.N46T	ENST00000263923	NM_002253.2	46	aAt/aCt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467623	66467623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	25	346	1	ENST00000273854.3:c.646G>T	p.Asp216Tyr	p.D216Y	ENST00000273854	NM_004439.5	216	Gat/Tat																																																																														
FAM175A	0	MSKCC	GRCh37	4	84390227	84390227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	12	519	0	ENST00000321945.7:c.554C>T	p.Ser185Phe	p.S185F	ENST00000321945	NM_139076.2	185	tCc/tTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106155526	106155526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749618735		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	43	401	0	ENST00000380013.4:c.427G>A	p.Asp143Asn	p.D143N	ENST00000380013	NM_001127208.2	143	Gat/Aat																																																																														
TET2	54790	MSKCC	GRCh37	4	106156199	106156199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	16	290	0	ENST00000380013.4:c.1100C>T	p.Ser367Phe	p.S367F	ENST00000380013	NM_001127208.2	367	tCt/tTt																																																																														
TET2	54790	MSKCC	GRCh37	4	106158454	106158454	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1182812722		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	32	264	0	ENST00000380013.4:c.3355T>G	p.Leu1119Val	p.L1119V	ENST00000380013	NM_001127208.2	1119	Tta/Gta																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143114261	143114261	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866217456		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	50	290	0	ENST00000262992.4:c.1160G>T	p.Arg387Ile	p.R387I	ENST00000262992	NM_001101669.1	387	aGa/aTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	28	433	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332586	153332586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768666009		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	19	337	0	ENST00000281708.4:c.370G>A	p.Asp124Asn	p.D124N	ENST00000281708	NM_033632.3	124	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509853	187509853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748762429		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	89	293	0	ENST00000441802.2:c.13660G>A	p.Glu4554Lys	p.E4554K	ENST00000441802	NM_005245.3	4554	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522476	187522476	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	25	554	0	ENST00000441802.2:c.11587T>C	p.Ser3863Pro	p.S3863P	ENST00000441802	NM_005245.3	3863	Tcc/Ccc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539727	187539727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	13	363	0	ENST00000441802.2:c.8013C>A	p.Phe2671Leu	p.F2671L	ENST00000441802	NM_005245.3	2671	ttC/ttA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	73	371	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541096	187541096	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	28	410	0	ENST00000441802.2:c.6644T>C	p.Phe2215Ser	p.F2215S	ENST00000441802	NM_005245.3	2215	tTc/tCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628927	187628927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	38	637	0	ENST00000441802.2:c.2055G>T	p.Glu685Asp	p.E685D	ENST00000441802	NM_005245.3	685	gaG/gaT																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31406984	31406984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	30	580	0	ENST00000344624.3:c.3923G>T	p.Arg1308Ile	p.R1308I	ENST00000344624		1308	aGa/aTa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31508814	31508814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	155	622	0	ENST00000344624.3:c.1501G>A	p.Val501Ile	p.V501I	ENST00000344624		501	Gtt/Att																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515591	31515591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	38	336	0	ENST00000344624.3:c.1028C>A	p.Ser343Tyr	p.S343Y	ENST00000344624		343	tCt/tAt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35860991	35860991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	18	359	0	ENST00000303115.3:c.120C>A	p.Phe40Leu	p.F40L	ENST00000303115	NM_002185.3	40	ttC/ttA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38944612	38944612	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs777123686		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	13	360	0	ENST00000357387.3:c.4849C>A	p.Leu1617Ile	p.L1617I	ENST00000357387	NM_152756.3	1617	Cta/Ata																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950075	38950075	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs750741188		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	34	467	0	ENST00000357387.3:c.3875C>A	p.Ser1292Tyr	p.S1292Y	ENST00000357387	NM_152756.3	1292	tCt/tAt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950648	38950648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776074870		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	10	351	0	ENST00000357387.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000357387	NM_152756.3	1101	tCg/tTg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168741	56168741	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775802110		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	35	412	0	ENST00000399503.3:c.1595G>A	p.Arg532Gln	p.R532Q	ENST00000399503	NM_005921.1	532	cGa/cAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177501	56177501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	14	328	0	ENST00000399503.3:c.2474G>T	p.Arg825Ile	p.R825I	ENST00000399503	NM_005921.1	825	aGa/aTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589609	67589609	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	17	242	1	ENST00000274335.5:c.1372G>T	p.Glu458Ter	p.E458*	ENST00000274335		458	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	13	240	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	38	258	0	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga																																																																														
MSH3	4437	MSKCC	GRCh37	5	80064749	80064749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148896355		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	36	399	1	ENST00000265081.6:c.2180G>A	p.Arg727Gln	p.R727Q	ENST00000265081	NM_002439.4	727	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	50	284	0	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674299	86674299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	10	301	0	ENST00000274376.6:c.2431C>A	p.His811Asn	p.H811N	ENST00000274376	NM_002890.2	811	Cat/Aat																																																																														
RASA1	5921	MSKCC	GRCh37	5	86681163	86681163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	47	274	0	ENST00000274376.6:c.2804A>G	p.Lys935Arg	p.K935R	ENST00000274376	NM_002890.2	935	aAa/aGa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86686657	86686657	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	10	251	0	ENST00000274376.6:c.3101A>G	p.Gln1034Arg	p.Q1034R	ENST00000274376	NM_002890.2	1034	cAa/cGa																																																																														
APC	324	MSKCC	GRCh37	5	112173918	112173918	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373428732		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	23	367	0	ENST00000257430.4:c.2627G>A	p.Arg876Gln	p.R876Q	ENST00000257430	NM_000038.5	876	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	27	201	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	72	308	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112178031	112178031	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1320484906		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	21	407	0	ENST00000257430.4:c.6740C>A	p.Ser2247Tyr	p.S2247Y	ENST00000257430	NM_000038.5	2247	tCt/tAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131893065	131893065	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	22	317	0	ENST00000265335.6:c.49A>T	p.Ile17Leu	p.I17L	ENST00000265335		17	Ata/Tta																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931279	131931279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	18	331	0	ENST00000265335.6:c.1984G>A	p.Ala662Thr	p.A662T	ENST00000265335		662	Gcc/Acc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131953803	131953803	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs769003601		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	14	309	0	ENST00000265335.6:c.3206G>T	p.Arg1069Ile	p.R1069I	ENST00000265335		1069	aGa/aTa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131953874	131953874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121912628		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	23	374	0	ENST00000265335.6:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000265335		1093	Cga/Tga																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149503887	149503887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758280032		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	49	668	0	ENST00000261799.4:c.1949C>T	p.Ser650Leu	p.S650L	ENST00000261799	NM_002609.3	650	tCg/tTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149504328	149504328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	70	675	0	ENST00000261799.4:c.1874C>A	p.Ser625Tyr	p.S625Y	ENST00000261799	NM_002609.3	625	tCt/tAt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518103	176518103	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs866476239		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	143	567	0	ENST00000292408.4:c.601C>T	p.Arg201Trp	p.R201W	ENST00000292408	NM_213647.1	201	Cgg/Tgg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562156	176562156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	33	480	0	ENST00000439151.2:c.52A>G	p.Asn18Asp	p.N18D	ENST00000439151	NM_022455.4	18	Aat/Gat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562934	176562934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	50	451	0	ENST00000439151.2:c.830C>A	p.Ser277Tyr	p.S277Y	ENST00000439151	NM_022455.4	277	tCt/tAt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709523	176709523	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs797045057		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	26	277	1	ENST00000439151.2:c.5950C>T	p.Arg1984Ter	p.R1984*	ENST00000439151	NM_022455.4	1984	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709530	176709530	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749277550		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	29	277	0	ENST00000439151.2:c.5957G>A	p.Arg1986His	p.R1986H	ENST00000439151	NM_022455.4	1986	cGc/cAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180049816	180049816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	55	762	0	ENST00000261937.6:c.1572G>T	p.Gln524His	p.Q524H	ENST00000261937	NM_182925.4	524	caG/caT																																																																														
IRF4	3662	MSKCC	GRCh37	6	395936	395936	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	43	379	0	ENST00000380956.4:c.492+1G>T		p.X164_splice	ENST00000380956	NM_001195286.1	164																																																																															
IRF4	3662	MSKCC	GRCh37	6	407498	407498	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	64	360	0	ENST00000380956.4:c.1256A>G	p.Gln419Arg	p.Q419R	ENST00000380956	NM_001195286.1	419	cAa/cGa																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020956	26020956	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	74	374	0	ENST00000357647.3:c.239A>C	p.Lys80Thr	p.K80T	ENST00000357647	NM_003529.2	80	aAa/aCa																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045954	26045954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	43	403	0	ENST00000540144.1:c.316G>A	p.Glu106Lys	p.E106K	ENST00000540144	NM_003531.2	106	Gaa/Aaa																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225789	26225789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	44	396	0	ENST00000360408.1:c.407C>T	p.Ala136Val	p.A136V	ENST00000360408	NM_003532.2	136	gCg/gTg																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271502	26271502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	35	384	0	ENST00000305910.3:c.111G>T	p.Lys37Asn	p.K37N	ENST00000305910	NM_003534.2	37	aaG/aaT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681943	30681943	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772145482		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	16	390	0	ENST00000376406.3:c.154G>A	p.Gly52Arg	p.G52R	ENST00000376406	NM_014641.2	52	Ggg/Agg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180621	32180621	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	60	569	0	ENST00000375023.3:c.2506T>G	p.Tyr836Asp	p.Y836D	ENST00000375023	NM_004557.3	836	Tac/Gac																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805778	32805778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	213	791	0	ENST00000374899.4:c.233C>T	p.Ser78Phe	p.S78F	ENST00000374899	NM_018833.2	78	tCc/tTc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43739012	43739012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	51	377	0	ENST00000523873.1:c.29G>T	p.Trp10Leu	p.W10L	ENST00000523873		10	tGg/tTg																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64286793	64286793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	25	376	0	ENST00000370651.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000370651	NM_003463.4	3	cGa/cAa																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64289975	64289975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	34	356	0	ENST00000370651.3:c.418G>A	p.Ala140Thr	p.A140T	ENST00000370651	NM_003463.4	140	Gct/Act																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662301	117662301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	10	549	0	ENST00000368508.3:c.5076G>T	p.Gln1692His	p.Q1692H	ENST00000368508	NM_002944.2	1692	caG/caT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662397	117662397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	15	447	0	ENST00000368508.3:c.4980G>T	p.Glu1660Asp	p.E1660D	ENST00000368508	NM_002944.2	1660	gaG/gaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117665230	117665230	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1258207555		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	23	258	0	ENST00000368508.3:c.4517G>T	p.Arg1506Ile	p.R1506I	ENST00000368508	NM_002944.2	1506	aGa/aTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708157	117708157	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	12	350	0	ENST00000368508.3:c.2020G>T	p.Glu674Ter	p.E674*	ENST00000368508	NM_002944.2	674	Gaa/Taa																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983213	149983213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	19	513	0	ENST00000253339.5:c.3045C>A	p.Phe1015Leu	p.F1015L	ENST00000253339		1015	ttC/ttA																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004834	150004834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	21	419	0	ENST00000253339.5:c.1391C>A	p.Ser464Tyr	p.S464Y	ENST00000253339		464	tCt/tAt																																																																														
PARK2	0	MSKCC	GRCh37	6	162206802	162206802	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	108	435	0	ENST00000366898.1:c.871+2T>C		p.X291_splice	ENST00000366898	NM_004562.2	291																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042169	6042169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35629870		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	38	472	1	ENST00000265849.7:c.452G>A	p.Arg151His	p.R151H	ENST00000265849	NM_000535.5	151	cGc/cAc																																																																														
ETV1	2115	MSKCC	GRCh37	7	14026311	14026311	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	11	217	0	ENST00000405192.2:c.134-1G>T		p.X45_splice	ENST00000405192	NM_001163147.1	45																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240779	55240779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	234	775	0	ENST00000275493.2:c.2023C>T	p.Arg675Trp	p.R675W	ENST00000275493	NM_005228.3	675	Cgg/Tgg																																																																														
HGF	3082	MSKCC	GRCh37	7	81339547	81339547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	13	368	0	ENST00000222390.5:c.1457C>A	p.Ser486Tyr	p.S486Y	ENST00000222390	NM_000601.4	486	tCt/tAt																																																																														
MET	4233	MSKCC	GRCh37	7	116397584	116397584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	17	530	0	ENST00000397752.3:c.1956C>A	p.Phe652Leu	p.F652L	ENST00000397752	NM_000245.2	652	ttC/ttA																																																																														
MET	4233	MSKCC	GRCh37	7	116398532	116398532	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	14	420	0	ENST00000397752.3:c.2122G>T	p.Glu708Ter	p.E708*	ENST00000397752	NM_000245.2	708	Gaa/Taa																																																																														
MET	4233	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	51	242	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140487360	140487360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507472		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	28	540	0	ENST00000288602.6:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000288602	NM_004333.4	389	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140494130	140494130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	63	761	0	ENST00000288602.6:c.1118C>T	p.Thr373Ile	p.T373I	ENST00000288602	NM_004333.4	373	aCa/aTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140534596	140534596	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1322163182		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	15	431	0	ENST00000288602.6:c.317G>A	p.Gly106Glu	p.G106E	ENST00000288602	NM_004333.4	106	gGa/gAa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523708	148523708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520183		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	14	267	0	ENST00000320356.2:c.745G>A	p.Glu249Lys	p.E249K	ENST00000320356	NM_004456.4	249	Gaa/Aaa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525973	148525973	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	10	243	0	ENST00000320356.2:c.485-1G>T		p.X162_splice	ENST00000320356	NM_004456.4	162																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151836804	151836804	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	101	487	0	ENST00000262189.6:c.14416C>T	p.Arg4806Ter	p.R4806*	ENST00000262189	NM_170606.2	4806	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151842334	151842334	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777526116		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	38	277	0	ENST00000262189.6:c.14078G>A	p.Arg4693Gln	p.R4693Q	ENST00000262189	NM_170606.2	4693	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879190	151879190	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	96	519	0	ENST00000262189.6:c.5755T>G	p.Ser1919Ala	p.S1919A	ENST00000262189	NM_170606.2	1919	Tct/Gct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151900104	151900104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	19	285	0	ENST00000262189.6:c.4007C>A	p.Ser1336Tyr	p.S1336Y	ENST00000262189	NM_170606.2	1336	tCt/tAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151932981	151932981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1402089231		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	15	52	0	ENST00000262189.6:c.2690G>A	p.Arg897Gln	p.R897Q	ENST00000262189	NM_170606.2	897	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151947996	151947996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	21	434	1	ENST00000262189.6:c.1677G>T	p.Glu559Asp	p.E559D	ENST00000262189	NM_170606.2	559	gaG/gaT																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187329	38187329	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2234552		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	23	507	1	ENST00000317025.8:c.1148G>A	p.Arg383Gln	p.R383Q	ENST00000317025	NM_023034.1	383	cGa/cAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942742	68942742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	20	365	0	ENST00000288368.4:c.554A>G	p.Lys185Arg	p.K185R	ENST00000288368	NM_024870.2	185	aAg/aGg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992692	68992692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529924687		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	32	498	0	ENST00000288368.4:c.1657G>A	p.Glu553Lys	p.E553K	ENST00000288368	NM_024870.2	553	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69011978	69011978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	18	569	0	ENST00000288368.4:c.2615C>A	p.Ser872Tyr	p.S872Y	ENST00000288368	NM_024870.2	872	tCt/tAt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981438	70981438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	96	966	1	ENST00000276594.2:c.658C>A	p.His220Asn	p.H220N	ENST00000276594	NM_024504.3	220	Cac/Aac																																																																														
NBN	4683	MSKCC	GRCh37	8	90947838	90947838	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	18	241	0	ENST00000265433.3:c.2237A>G	p.Tyr746Cys	p.Y746C	ENST00000265433	NM_002485.4	746	tAc/tGc																																																																														
NBN	4683	MSKCC	GRCh37	8	90967761	90967761	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	19	180	1	ENST00000265433.3:c.1147G>T	p.Glu383Ter	p.E383*	ENST00000265433	NM_002485.4	383	Gaa/Taa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864904	117864904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	11	296	0	ENST00000297338.2:c.1205G>T	p.Arg402Ile	p.R402I	ENST00000297338	NM_006265.2	402	aGa/aTa																																																																														
MYC	4609	MSKCC	GRCh37	8	128750787	128750787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	58	643	0	ENST00000377970.2:c.324C>A	p.Phe108Leu	p.F108L	ENST00000377970	NM_002467.4	108	ttC/ttA																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740736	145740736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	70	660	0	ENST00000428558.2:c.1364C>T	p.Ser455Phe	p.S455F	ENST00000428558	NM_004260.3	455	tCc/tTc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5050746	5050746	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	23	376	0	ENST00000381652.3:c.529G>T	p.Glu177Ter	p.E177*	ENST00000381652	NM_004972.3	177	Gaa/Taa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054768	5054768	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	30	325	0	ENST00000381652.3:c.820G>T	p.Glu274Ter	p.E274*	ENST00000381652	NM_004972.3	274	Gaa/Taa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072546	5072546	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	52	355	0	ENST00000381652.3:c.1696G>T	p.Glu566Ter	p.E566*	ENST00000381652	NM_004972.3	566	Gaa/Taa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072585	5072585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	23	341	0	ENST00000381652.3:c.1735C>A	p.Leu579Ile	p.L579I	ENST00000381652	NM_004972.3	579	Ctt/Att																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072613	5072613	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1473044275		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	25	282	0	ENST00000381652.3:c.1763G>A	p.Arg588Lys	p.R588K	ENST00000381652	NM_004972.3	588	aGa/aAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5077508	5077508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	28	283	0	ENST00000381652.3:c.1920G>T	p.Lys640Asn	p.K640N	ENST00000381652	NM_004972.3	640	aaG/aaT																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090520	5090520	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	23	334	0	ENST00000381652.3:c.2836G>T	p.Glu946Ter	p.E946*	ENST00000381652	NM_004972.3	946	Gaa/Taa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090825	5090825	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	13	267	0	ENST00000381652.3:c.2973A>C	p.Lys991Asn	p.K991N	ENST00000381652	NM_004972.3	991	aaA/aaC																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5557744	5557744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	44	342	0	ENST00000397747.3:c.758C>A	p.Ser253Tyr	p.S253Y	ENST00000397747	NM_025239.3	253	tCt/tAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341701	8341701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766088715		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	25	438	2	ENST00000356435.5:c.4939G>A	p.Glu1647Lys	p.E1647K	ENST00000356435		1647	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389318	8389318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	32	544	0	ENST00000356435.5:c.4300G>A	p.Glu1434Lys	p.E1434K	ENST00000356435		1434	Gaa/Aaa																																																																														
TEK	7010	MSKCC	GRCh37	9	27185487	27185487	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	67	423	0	ENST00000380036.4:c.1187A>C	p.Lys396Thr	p.K396T	ENST00000380036	NM_000459.3	396	aAa/aCa																																																																														
TEK	7010	MSKCC	GRCh37	9	27197465	27197465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	28	719	0	ENST00000380036.4:c.1777G>T	p.Val593Phe	p.V593F	ENST00000380036	NM_000459.3	593	Gtt/Ttt																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430668	80430668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	56	494	0	ENST00000286548.4:c.340C>T	p.Arg114Ter	p.R114*	ENST00000286548	NM_002072.3	114	Cga/Tga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285871	87285871	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1408094711		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	71	488	0	ENST00000277120.3:c.208G>A	p.Glu70Lys	p.E70K	ENST00000277120		70	Gaa/Aaa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317081	87317081	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201490630		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	27	380	0	ENST00000277120.3:c.220G>A	p.Ala74Thr	p.A74T	ENST00000277120		74	Gca/Aca																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317277	87317277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	15	405	0	ENST00000277120.3:c.302C>A	p.Ser101Tyr	p.S101Y	ENST00000277120		101	tCt/tAt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317285	87317285	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	46	407	0	ENST00000277120.3:c.310A>C	p.Lys104Gln	p.K104Q	ENST00000277120		104	Aaa/Caa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87322770	87322770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781137734		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	18	348	0	ENST00000277120.3:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000277120		124	cGa/cAa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342596	87342961	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCCAACCTCAGACCACCACTGGTGCATTCCATTCACTGTGAAAGGCAACCCCAAACCAGCGCTTCAGTGGTTCTATAACGGGGCAATATTGAATGAGTCCAAATACATCTGTACTAAAATACATGTTACCAATCACACGGAGTACCACGGCTGCCTCCAGCTGGATAATCCCACTCACATGAACAATGGGGACTACACTCTAATAGCCAAGAATGAGTATGGGAAGGATGAGAAACAGATTTCTGCTCACTTCATGGGCTGGCCTGGAATTGACGATGGTGAGTAACTGACACTTTTGTATGTGGGGAGAAGATAAAGTCTATCATTCACCTGTTGACAAAATCATGTATACAATAAGCCATCCC	CTCCAACCTCAGACCACCACTGGTGCATTCCATTCACTGTGAAAGGCAACCCCAAACCAGCGCTTCAGTGGTTCTATAACGGGGCAATATTGAATGAGTCCAAATACATCTGTACTAAAATACATGTTACCAATCACACGGAGTACCACGGCTGCCTCCAGCTGGATAATCCCACTCACATGAACAATGGGGACTACACTCTAATAGCCAAGAATGAGTATGGGAAGGATGAGAAACAGATTTCTGCTCACTTCATGGGCTGGCCTGGAATTGACGATGGTGAGTAACTGACACTTTTGTATGTGGGGAGAAGATAAAGTCTATCATTCACCTGTTGACAAAATCATGTATACAATAAGCCATCCC	TT			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	18	528	2	ENST00000277120.3:c.881_1159+87delinsTT		p.X294_splice	ENST00000277120		294																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87342787	87342787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	18	438	0	ENST00000277120.3:c.1072G>A	p.Asp358Asn	p.D358N	ENST00000277120		358	Gac/Aac																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908824	101908824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	38	446	0	ENST00000374994.4:c.1188C>A	p.Phe396Leu	p.F396L	ENST00000374994	NM_004612.2	396	ttC/ttA																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128432180	128432180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	14	333	0	ENST00000265960.3:c.266G>T	p.Arg89Ile	p.R89I	ENST00000265960	NM_001006617.1	89	aGa/aTa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798742	135798742	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	38	198	0	ENST00000298552.3:c.501G>T	p.Lys167Asn	p.K167N	ENST00000298552	NM_001162426.1	167	aaG/aaT																																																																														
RXRA	6256	MSKCC	GRCh37	9	137321067	137321067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	75	611	1	ENST00000481739.1:c.1024G>A	p.Val342Met	p.V342M	ENST00000481739	NM_002957.4	342	Gtg/Atg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139794123	139794123	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs200834553		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	30	425	0	ENST00000247668.2:c.266C>T	p.Ser89Leu	p.S89L	ENST00000247668	NM_021138.3	89	tCg/tTg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1325493	1325493	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	31	433	0	ENST00000381566.1:c.183-1G>T		p.X61_splice	ENST00000381566		61																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44921917	44921917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	29	437	0	ENST00000377967.4:c.1451G>T	p.Arg484Ile	p.R484I	ENST00000377967	NM_021140.2	484	aGa/aTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030535	47030535	+	intron_variant	Intron	SNP	G	G	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	189	796	0	ENST00000329236.7:c.201+1638G>A		p.*67*	ENST00000329236	NM_001204466.1																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53253955	53253955	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	68	566	0	ENST00000375401.3:c.117G>T	p.Glu39Asp	p.E39D	ENST00000375401	NM_004187.3	39	gaG/gaT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412287	63412287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	146	874	2	ENST00000330258.3:c.880G>A	p.Val294Ile	p.V294I	ENST00000330258	NM_152424.3	294	Gta/Ata																																																																														
AR	367	MSKCC	GRCh37	X	66863230	66863230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	27	488	0	ENST00000374690.3:c.1749C>A	p.Phe583Leu	p.F583L	ENST00000374690	NM_000044.3	583	ttC/ttA																																																																														
MED12	9968	MSKCC	GRCh37	X	70347966	70347966	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770988288		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	21	564	0	ENST00000374080.3:c.3205G>A	p.Asp1069Asn	p.D1069N	ENST00000374080		1069	Gat/Aat																																																																														
ATRX	546	MSKCC	GRCh37	X	76855270	76855270	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	15	308	0	ENST00000373344.5:c.5717G>T	p.Ser1906Ile	p.S1906I	ENST00000373344	NM_000489.3	1906	aGt/aTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76909681	76909681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	22	321	0	ENST00000373344.5:c.4224G>T	p.Lys1408Asn	p.K1408N	ENST00000373344	NM_000489.3	1408	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76937356	76937356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	15	453	0	ENST00000373344.5:c.3392G>T	p.Arg1131Ile	p.R1131I	ENST00000373344	NM_000489.3	1131	aGa/aTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937769	76937769	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs371962239		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	12	437	1	ENST00000373344.5:c.2979G>T	p.Lys993Asn	p.K993N	ENST00000373344	NM_000489.3	993	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76937850	76937850	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs138256318		P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	60	507	0	ENST00000373344.5:c.2898G>T	p.Glu966Asp	p.E966D	ENST00000373344	NM_000489.3	966	gaG/gaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76939893	76939893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	12	522	0	ENST00000373344.5:c.855G>T	p.Glu285Asp	p.E285D	ENST00000373344	NM_000489.3	285	gaG/gaT																																																																														
BTK	695	MSKCC	GRCh37	X	100611795	100611795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	58	473	0	ENST00000308731.7:c.1326C>A	p.Phe442Leu	p.F442L	ENST00000308731	NM_000061.2	442	ttC/ttA																																																																														
XIAP	331	MSKCC	GRCh37	X	123020196	123020196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	81	688	0	ENST00000355640.3:c.684C>A	p.Phe228Leu	p.F228L	ENST00000355640		228	ttC/ttA																																																																														
XIAP	331	MSKCC	GRCh37	X	123034413	123034413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	48	394	0	ENST00000355640.3:c.1170G>T	p.Lys390Asn	p.K390N	ENST00000355640		390	aaG/aaT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176469	123176469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	47	272	0	ENST00000218089.9:c.436C>T	p.Arg146Ter	p.R146*	ENST00000218089	NM_001042749.1	146	Cga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195645	123195645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	23	311	0	ENST00000218089.9:c.1559C>T	p.Ala520Val	p.A520V	ENST00000218089	NM_001042749.1	520	gCt/gTt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123210238	123210238	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	74	442	0	ENST00000218089.9:c.2590T>G	p.Leu864Val	p.L864V	ENST00000218089	NM_001042749.1	864	Tta/Gta																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123499661	123499661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	57	560	0	ENST00000371139.4:c.188C>A	p.Ser63Tyr	p.S63Y	ENST00000371139	NM_001114937.2	63	tCt/tAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593602	55593610	+	protein_altering_variant	In_Frame_Del	DEL	GTGGAAGGT	GTGGAAGGT	CAC			P-0045145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	134	310	1	ENST00000288135.5:c.1668_1676delinsCAC	p.Gln556_Val559delinsHisThr	p.Q556_V559delinsHT	ENST00000288135	NM_000222.2	556	caGTGGAAGGTt/caCACt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	107	345	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	244	905	1	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29586109	29586109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	90	379	0	ENST00000358273.4:c.4392C>G	p.Phe1464Leu	p.F1464L	ENST00000358273	NM_001042492.2	1464	ttC/ttG																																																																														
CIC	23152	MSKCC	GRCh37	19	42799063	42799065	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs751580245		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	161	1423	0	ENST00000575354.2:c.4550_4552del	p.Lys1517del	p.K1517del	ENST00000575354	NM_015125.3	1516	cAGAag/cag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873648	35873648	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	71	284	0	ENST00000303115.3:c.604G>C	p.Glu202Gln	p.E202Q	ENST00000303115	NM_002185.3	202	Gag/Cag																																																																														
EP300	2033	MSKCC	GRCh37	22	41551058	41551058	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	65	518	2	ENST00000263253.7:c.3202C>T	p.Gln1068Ter	p.Q1068*	ENST00000263253	NM_001429.3	1068	Cag/Tag																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30302655	30302655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	22	305	2	ENST00000322652.5:c.746C>T	p.Ser249Leu	p.S249L	ENST00000322652	NM_015355.2	249	tCg/tTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7117150	7117150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146490822		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	88	891	0	ENST00000302850.5:c.4066G>A	p.Glu1356Lys	p.E1356K	ENST00000302850	NM_000208.2	1356	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141484	11141484	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	126	1041	0	ENST00000344626.4:c.3461T>G	p.Leu1154Arg	p.L1154R	ENST00000344626	NM_003072.3	1154	cTc/cGc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851498	63851498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	63	564	0	ENST00000279873.7:c.2276G>A	p.Arg759Lys	p.R759K	ENST00000279873	NM_032199.2	759	aGa/aAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892212	9892212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	320	713	0	ENST00000330684.3:c.2278G>T	p.Gly760Cys	p.G760C	ENST00000330684	NM_001134407.1	760	Ggt/Tgt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141569579	141569582	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	51	491	0	ENST00000220592.5:c.702_705del	p.Cys235LysfsTer15	p.C235Kfs*15	ENST00000220592	NM_012154.3	234	gtTTGT/gt																																																																														
ERF	2077	MSKCC	GRCh37	19	42753188	42753188	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780415692		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	154	1233	0	ENST00000222329.4:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000222329	NM_006494.2	359	cCg/cTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29552123	29552123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	29	170	0	ENST00000358273.4:c.1856G>A	p.Arg619Lys	p.R619K	ENST00000358273	NM_001042492.2	619	aGa/aAa																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246021843	246021843	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs1336136860		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	101	743	0	ENST00000388985.4:c.1031T>A	p.Leu344Ter	p.L344*	ENST00000388985		344	tTg/tAg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77090400	77090400	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	140	477	0	ENST00000356341.3:c.325A>T	p.Thr109Ser	p.T109S	ENST00000356341	NM_002576.4	109	Aca/Tca																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022371	12022371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	53	1051	0	ENST00000396373.4:c.477G>C	p.Gln159His	p.Q159H	ENST00000396373	NM_001987.4	159	caG/caC																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022825	12022825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	54	742	0	ENST00000396373.4:c.931G>T	p.Asp311Tyr	p.D311Y	ENST00000396373	NM_001987.4	311	Gac/Tac																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120722	115120722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	173	1056	0	ENST00000257566.3:c.284C>A	p.Pro95His	p.P95H	ENST00000257566	NM_016569.3	95	cCc/cAc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129359	2129359	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	475	1129	0	ENST00000219476.3:c.3214A>C	p.Ser1072Arg	p.S1072R	ENST00000219476	NM_000548.3	1072	Agc/Cgc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671675	67671675	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	158	565	0	ENST00000264010.4:c.2084A>C	p.Glu695Ala	p.E695A	ENST00000264010	NM_006565.3	695	gAg/gCg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117680	70117680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	162	1211	0	ENST00000245479.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000245479	NM_000346.3	50	Gag/Aag																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793308	33793308	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	24	361	0	ENST00000498907.2:c.13G>C	p.Asp5His	p.D5H	ENST00000498907	NM_004364.3	5	Gac/Cac																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96920629	96920629	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	93	536	0	ENST00000258439.3:c.351del	p.Pro118ArgfsTer6	p.P118Rfs*6	ENST00000258439	NM_001193304.2	117	ggG/gg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128018917	128018917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	55	437	0	ENST00000285398.2:c.1951G>A	p.Val651Ile	p.V651I	ENST00000285398	NM_000122.1	651	Gtt/Att																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198281574	198281574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	66	549	1	ENST00000335508.6:c.557G>T	p.Gly186Val	p.G186V	ENST00000335508	NM_012433.2	186	gGa/gTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41573970	41573970	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	100	774	0	ENST00000263253.7:c.6255C>G	p.Ile2085Met	p.I2085M	ENST00000263253	NM_001429.3	2085	atC/atG																																																																														
EP300	2033	MSKCC	GRCh37	22	41574076	41574076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	91	700	1	ENST00000263253.7:c.6361C>T	p.Gln2121Ter	p.Q2121*	ENST00000263253	NM_001429.3	2121	Cag/Tag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729930	41729930	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	87	893	1	ENST00000242208.4:c.599A>T	p.Glu200Val	p.E200V	ENST00000242208	NM_002192.2	200	gAg/gTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128846104	128846104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	277	1067	0	ENST00000249373.3:c.1034C>A	p.Ala345Asp	p.A345D	ENST00000249373	NM_005631.4	345	gCc/gAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140534663	140534663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	52	250	0	ENST00000288602.6:c.250G>C	p.Glu84Gln	p.E84Q	ENST00000288602	NM_004333.4	84	Gaa/Caa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740348	145740348	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs774637277		P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	140	1389	0	ENST00000428558.2:c.1592C>G	p.Ser531Cys	p.S531C	ENST00000428558	NM_004260.3	531	tCt/tGt																																																																														
ATRX	546	MSKCC	GRCh37	X	76909659	76909659	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	56	344	0	ENST00000373344.5:c.4246C>T	p.Gln1416Ter	p.Q1416*	ENST00000373344	NM_000489.3	1416	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0048544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	552	525	3	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
YES1	7525	MSKCC	GRCh37	18	747978	747978	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	78	410	0	ENST00000314574.4:c.412A>G	p.Lys138Glu	p.K138E	ENST00000314574	NM_005433.3	138	Aag/Gag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876310	35876310	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	124	396	0	ENST00000303115.3:c.1102A>C	p.Thr368Pro	p.T368P	ENST00000303115	NM_002185.3	368	Aca/Cca																																																																														
ATRX	546	MSKCC	GRCh37	X	76890147	76890147	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0048544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			10	64	191	1	ENST00000373344.5:c.4747A>T	p.Lys1583Ter	p.K1583*	ENST00000373344	NM_000489.3	1583	Aag/Tag																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086008	16086008	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	180	224	0	ENST00000281043.3:c.1184A>T	p.Asn395Ile	p.N395I	ENST00000281043	NM_005378.4	395	aAc/aTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576854	212576854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	104	316	0	ENST00000342788.4:c.1045G>T	p.Asp349Tyr	p.D349Y	ENST00000342788	NM_005235.2	349	Gat/Tat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170249	32170249	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	107	244	0	ENST00000375023.3:c.3359A>C	p.Tyr1120Ser	p.Y1120S	ENST00000375023	NM_004557.3	1120	tAt/tCt																																																																														
TET1	80312	MSKCC	GRCh37	10	70333254	70333254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	77	372	0	ENST00000373644.4:c.1159G>C	p.Glu387Gln	p.E387Q	ENST00000373644	NM_030625.2	387	Gag/Cag																																																																														
POLE	5426	MSKCC	GRCh37	12	133212555	133212555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	274	326	0	ENST00000320574.5:c.5734G>A	p.Glu1912Lys	p.E1912K	ENST00000320574	NM_006231.2	1912	Gaa/Aaa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467868	99467868	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	239	327	0	ENST00000268035.6:c.2737A>T	p.Asn913Tyr	p.N913Y	ENST00000268035	NM_000875.3	913	Aat/Tat																																																																														
CDH1	999	MSKCC	GRCh37	16	68867265	68867265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121964872		P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	168	286	0	ENST00000261769.5:c.2512A>G	p.Ser838Gly	p.S838G	ENST00000261769	NM_004360.3	838	Agc/Ggc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819671	81819671	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	338	488	0	ENST00000359376.3:c.77C>A	p.Thr26Lys	p.T26K	ENST00000359376	NM_002661.3	26	aCg/aAg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346165	89346165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	97	218	1	ENST00000301030.4:c.6785G>C	p.Gly2262Ala	p.G2262A	ENST00000301030	NM_001256183.1	2262	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	319	417	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902142	50902142	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772197667		P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	105	475	0	ENST00000440232.2:c.34G>A	p.Gly12Arg	p.G12R	ENST00000440232	NM_002691.3	12	Ggg/Agg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417493	139417493	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	252	372	0	ENST00000277541.6:c.551del	p.Gln184ArgfsTer93	p.Q184Rfs*93	ENST00000277541	NM_017617.3	184	cAg/cg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519961		P-0001716-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	181	435	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519742		P-0001716-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	239	616	0	ENST00000078429.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000078429	NM_002067.2	209	cAg/cCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			899	69	459	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270112	66270112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	42	440	0	ENST00000273854.3:c.1770C>G	p.Ile590Met	p.I590M	ENST00000273854	NM_004439.5	590	atC/atG																																																																														
SMO	6608	MSKCC	GRCh37	7	128846426	128846426	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	33	297	0	ENST00000249373.3:c.1262G>T	p.Arg421Leu	p.R421L	ENST00000249373	NM_005631.4	421	cGa/cTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874136	151874136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			974	62	517	0	ENST00000262189.6:c.8402A>G	p.Asn2801Ser	p.N2801S	ENST00000262189	NM_170606.2	2801	aAc/aGc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742486	145742486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62530445		P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	37	329	1	ENST00000428558.2:c.302C>T	p.Ser101Leu	p.S101L	ENST00000428558	NM_004260.3	101	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438025	49438025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			745	60	466	0	ENST00000301067.7:c.5146G>T	p.Ala1716Ser	p.A1716S	ENST00000301067	NM_003482.3	1716	Gca/Tca																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245759	41245759	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs55650082		P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			838	94	524	0	ENST00000357654.3:c.1789G>T	p.Glu597Ter	p.E597*	ENST00000357654	NM_007294.3	597	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108114772	108114772	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			745	120	455	0	ENST00000278616.4:c.590del	p.Gly197AspfsTer9	p.G197Dfs*9	ENST00000278616	NM_000051.3	197	Gga/ga																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0009377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	201	329	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0009377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	195	301	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	277	397	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577524	7577525	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAG			P-0009377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	209	393	0	ENST00000269305.4:c.754_756dup	p.Leu252dup	p.L252dup	ENST00000269305	NM_001126112.2	252	-/CTC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	241	347	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022899	33022899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868208266		P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	81	302	2	ENST00000300177.4:c.8G>A	p.Arg3His	p.R3H	ENST00000300177	NM_001191322.1	3	cGc/cAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602667	10602667	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	551	868	0	ENST00000171111.5:c.911T>A	p.Ile304Asn	p.I304N	ENST00000171111	NM_203500.1	304	aTc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	185	461	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249469	153249469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	173	465	1	ENST00000281708.4:c.1309G>A	p.Gly437Arg	p.G437R	ENST00000281708	NM_033632.3	437	Gga/Aga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877427	40877427	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	170	514	0	ENST00000373198.4:c.2269G>T	p.Glu757Ter	p.E757*	ENST00000373198	NM_133170.3	757	Gag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945075	151945075	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs762187073		P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	55	413	0	ENST00000262189.6:c.2444C>A	p.Thr815Asn	p.T815N	ENST00000262189	NM_170606.2	815	aCt/aAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714594	52714594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	292	750	0	ENST00000322088.6:c.352G>A	p.Glu118Lys	p.E118K	ENST00000322088	NM_014225.5	118	Gag/Aag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115981	8115981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	152	344	0	ENST00000346208.3:c.1327G>T	p.Gly443Cys	p.G443C	ENST00000346208		443	Ggt/Tgt																																																																														
RET	5979	MSKCC	GRCh37	10	43608362	43608362	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs144015580		P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	362	812	0	ENST00000355710.3:c.1710C>A	p.Cys570Ter	p.C570*	ENST00000355710	NM_020975.4	570	tgC/tgA																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244313	46244313	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	289	355	1	ENST00000334344.6:c.2408del	p.Gly803AlafsTer19	p.G803Afs*19	ENST00000334344	NM_152641.2	803	Ggc/gc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646297	3646297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	189	802	1	ENST00000294008.3:c.1781G>T	p.Gly594Val	p.G594V	ENST00000294008	NM_032444.2	594	gGc/gTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778918	3778918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	324	671	0	ENST00000262367.5:c.6130G>T	p.Ala2044Ser	p.A2044S	ENST00000262367	NM_004380.2	2044	Gcc/Tcc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992619	72992619	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	103	473	1	ENST00000268489.5:c.1426G>T	p.Glu476Ter	p.E476*	ENST00000268489	NM_006885.3	476	Gag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657587	37657587	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	226	494	0	ENST00000447079.4:c.2504A>T	p.His835Leu	p.H835L	ENST00000447079	NM_015083.1	835	cAt/cTt																																																																														
EZH1	2145	MSKCC	GRCh37	17	40865266	40865266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	293	565	0	ENST00000428826.2:c.1165G>T	p.Asp389Tyr	p.D389Y	ENST00000428826		389	Gac/Tac																																																																														
ALK	238	MSKCC	GRCh37	2	29606722	29606722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	99	431	0	ENST00000389048.3:c.1158G>T	p.Trp386Cys	p.W386C	ENST00000389048	NM_004304.4	386	tgG/tgT																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655164	45655164	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	211	453	0	ENST00000407780.3:c.688A>T	p.Ser230Cys	p.S230C	ENST00000407780	NM_001283052.1	230	Agc/Tgc																																																																														
ATR	545	MSKCC	GRCh37	3	142281546	142281546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	219	437	0	ENST00000350721.4:c.698G>T	p.Gly233Val	p.G233V	ENST00000350721	NM_001184.3	233	gGt/gTt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143067053	143067053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	89	282	1	ENST00000262992.4:c.1660G>T	p.Gly554Cys	p.G554C	ENST00000262992	NM_001101669.1	554	Ggc/Tgc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754287	57754287	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	85	343	0	ENST00000274289.3:c.564G>T	p.Gln188His	p.Q188H	ENST00000274289	NM_006622.3	188	caG/caT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508241	106508241	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763784435		P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	204	487	0	ENST00000359195.3:c.235C>A	p.Leu79Met	p.L79M	ENST00000359195	NM_002649.2	79	Ctg/Atg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031722	69031722	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	303	426	0	ENST00000288368.4:c.3477T>A	p.His1159Gln	p.H1159Q	ENST00000288368	NM_024870.2	1159	caT/caA																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737651	145737651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	546	884	3	ENST00000428558.2:c.3112C>A	p.Arg1038Ser	p.R1038S	ENST00000428558	NM_004260.3	1038	Cgc/Agc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239885	53239885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	294	304	0	ENST00000375401.3:c.1556G>C	p.Trp519Ser	p.W519S	ENST00000375401	NM_004187.3	519	tGg/tCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			758	164	320	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579336	7579336	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			537	69	205	0	ENST00000269305.4:c.351del	p.Thr118GlnfsTer5	p.T118Qfs*5	ENST00000269305	NM_001126112.2	117	ggG/gg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156837985	156837985	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	104	258	0	ENST00000524377.1:c.518A>T	p.Gln173Leu	p.Q173L	ENST00000524377	NM_002529.3	173	cAg/cTg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176085798	176085798	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1027	70	327	0	ENST00000367669.3:c.988G>T	p.Glu330Ter	p.E330*	ENST00000367669	NM_022457.5	330	Gaa/Taa																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119666120	119666120	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	152	345	0	ENST00000316626.5:c.361G>T	p.Glu121Ter	p.E121*	ENST00000316626		121	Gag/Tag																																																																														
ATR	545	MSKCC	GRCh37	3	142212048	142212048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			822	92	405	0	ENST00000350721.4:c.6004G>T	p.Ala2002Ser	p.A2002S	ENST00000350721	NM_001184.3	2002	Gct/Tct																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043483	180043483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	46	161	0	ENST00000261937.6:c.3103C>A	p.His1035Asn	p.H1035N	ENST00000261937	NM_182925.4	1035	Cac/Aac																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047947	180047947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	41	258	0	ENST00000261937.6:c.2228C>A	p.Ala743Glu	p.A743E	ENST00000261937	NM_182925.4	743	gCg/gAg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332804	152332804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			759	83	455	0	ENST00000206249.3:c.1110G>T	p.Leu370Phe	p.L370F	ENST00000206249	NM_000125.3	370	ttG/ttT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509012	106509012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	137	193	0	ENST00000359195.3:c.1006C>A	p.His336Asn	p.H336N	ENST00000359195	NM_002649.2	336	Cat/Aat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078436	5078436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	122	233	0	ENST00000381652.3:c.2123C>A	p.Pro708Gln	p.P708Q	ENST00000381652	NM_004972.3	708	cCa/cAa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396757	139396757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	50	165	0	ENST00000277541.6:c.5351G>T	p.Arg1784Leu	p.R1784L	ENST00000277541	NM_017617.3	1784	cGg/cTg																																																																														
ATM	472	MSKCC	GRCh37	11	108121599	108121599	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1037	174	365	0	ENST00000278616.4:c.1407G>C	p.Arg469Ser	p.R469S	ENST00000278616	NM_000051.3	469	agG/agC																																																																														
POLE	5426	MSKCC	GRCh37	12	133225522	133225522	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			735	52	245	1	ENST00000320574.5:c.4142A>G	p.Tyr1381Cys	p.Y1381C	ENST00000320574	NM_006231.2	1381	tAt/tGt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244501	41244501	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			826	254	300	0	ENST00000357654.3:c.3047A>T	p.Asn1016Ile	p.N1016I	ENST00000357654	NM_007294.3	1016	aAt/aTt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291100	10291101	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	68	223	0	ENST00000340748.4:c.370_371delinsTG	p.Asp124Cys	p.D124C	ENST00000340748		124	GAt/TGt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602257	10602257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	133	163	0	ENST00000171111.5:c.1321G>T	p.Glu441Ter	p.E441*	ENST00000171111	NM_203500.1	441	Gag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11113812	11113812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	131	167	0	ENST00000344626.4:c.1920G>T	p.Glu640Asp	p.E640D	ENST00000344626	NM_003072.3	640	gaG/gaT																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52709219	52709219	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1313754779		P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	105	205	0	ENST00000322088.6:c.173C>T	p.Thr58Ile	p.T58I	ENST00000322088	NM_014225.5	58	aCc/aTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561142	9561142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	108	346	0	ENST00000353224.5:c.640G>T	p.Asp214Tyr	p.D214Y	ENST00000353224	NM_177990.2	214	Gac/Tac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306615	41306615	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	52	329	0	ENST00000373198.4:c.1044del	p.Trp348CysfsTer49	p.W348Cfs*49	ENST00000373198	NM_133170.3	348	tgG/tg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207201	1207203	+	splice_donor_variant,coding_sequence_variant	Splice_Site	ONP	AAG	AAG	GAT			P-0002421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	75	112	0	ENST00000326873.7:c.289_290+1delinsGAT		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			105	32	501	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SYK	6850	MSKCC	GRCh37	9	93650109	93650109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	51	689	2	ENST00000375746.1:c.1660G>A	p.Asp554Asn	p.D554N	ENST00000375746	NM_001174167.1	554	Gat/Aat																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480341	56480341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	74	561	0	ENST00000267101.3:c.448G>A	p.Glu150Lys	p.E150K	ENST00000267101	NM_001982.3	150	Gag/Aag																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363243	40363243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	67	657	0	ENST00000397332.2:c.986C>T	p.Ser329Leu	p.S329L	ENST00000397332	NM_001033082.2	329	tCg/tTg																																																																														
PARP1	142	MSKCC	GRCh37	1	226567800	226567800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1389888337		P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	79	795	0	ENST00000366794.5:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000366794	NM_001618.3	456	Gag/Aag																																																																														
BARD1	580	MSKCC	GRCh37	2	215645639	215645639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	48	737	0	ENST00000260947.4:c.959G>A	p.Gly320Glu	p.G320E	ENST00000260947	NM_000465.2	320	gGa/gAa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053566	37053566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	70	699	0	ENST00000231790.2:c.653C>T	p.Ser218Phe	p.S218F	ENST00000231790	NM_000249.3	218	tCc/tTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125533	47125533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	59	575	0	ENST00000409792.3:c.5737G>A	p.Glu1913Lys	p.E1913K	ENST00000409792	NM_014159.6	1913	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157491	106157491	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777279382		P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	33	409	0	ENST00000380013.4:c.2392G>A	p.Glu798Lys	p.E798K	ENST00000380013	NM_001127208.2	798	Gag/Aag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876382	35876382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1283489708		P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	73	670	0	ENST00000303115.3:c.1174G>A	p.Glu392Lys	p.E392K	ENST00000303115	NM_002185.3	392	Gag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562804	176562804	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771968592		P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	82	647	0	ENST00000439151.2:c.700G>A	p.Glu234Lys	p.E234K	ENST00000439151	NM_022455.4	234	Gaa/Aaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638668	176638668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	93	773	0	ENST00000439151.2:c.3268C>A	p.Pro1090Thr	p.P1090T	ENST00000439151	NM_022455.4	1090	Ccc/Acc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502163	157502163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	68	490	0	ENST00000346085.5:c.3196G>A	p.Glu1066Lys	p.E1066K	ENST00000346085	NM_020732.3	1066	Gag/Aag																																																																														
MYC	4609	MSKCC	GRCh37	8	128750924	128750924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	58	603	0	ENST00000377970.2:c.461C>T	p.Ser154Leu	p.S154L	ENST00000377970	NM_002467.4	154	tCg/tTg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430541	80430541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	20	656	0	ENST00000286548.4:c.467C>T	p.Ser156Phe	p.S156F	ENST00000286548	NM_002072.3	156	tCt/tTt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904914	101904914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	52	496	0	ENST00000374994.4:c.902G>A	p.Gly301Glu	p.G301E	ENST00000374994	NM_004612.2	301	gGa/gAa																																																																														
ABL1	25	MSKCC	GRCh37	9	133759700	133759700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	63	682	0	ENST00000318560.5:c.2023G>A	p.Glu675Lys	p.E675K	ENST00000318560	NM_005157.4	675	Gag/Aag																																																																														
RET	5979	MSKCC	GRCh37	10	43623699	43623699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	68	635	0	ENST00000355710.3:c.3327G>T	p.Met1109Ile	p.M1109I	ENST00000355710	NM_020975.4	1109	atG/atT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285666	46285666	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			290	59	595	0	ENST00000334344.6:c.5026C>T	p.Gln1676Ter	p.Q1676*	ENST00000334344	NM_152641.2	1676	Cag/Tag																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611388	28611388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	67	663	0	ENST00000241453.7:c.1243G>A	p.Glu415Lys	p.E415K	ENST00000241453	NM_004119.2	415	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	41988856	41988856	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	63	560	0	ENST00000219905.7:c.1648C>T	p.Gln550Ter	p.Q550*	ENST00000219905	NM_001164273.1	550	Cag/Tag																																																																														
PALB2	79728	MSKCC	GRCh37	16	23619264	23619264	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs864622138		P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	77	597	0	ENST00000261584.4:c.3271C>T	p.Gln1091Ter	p.Q1091*	ENST00000261584	NM_024675.3	1091	Cag/Tag																																																																														
NUP93	9688	MSKCC	GRCh37	16	56792478	56792478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	57	589	0	ENST00000308159.5:c.208G>A	p.Asp70Asn	p.D70N	ENST00000308159	NM_014669.4	70	Gac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828205	72828205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	65	771	2	ENST00000268489.5:c.8376G>A	p.Met2792Ile	p.M2792I	ENST00000268489	NM_006885.3	2792	atG/atA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993237	72993237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	83	898	3	ENST00000268489.5:c.808G>A	p.Asp270Asn	p.D270N	ENST00000268489	NM_006885.3	270	Gat/Aat																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619289	37619289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	47	469	0	ENST00000447079.4:c.965G>A	p.Arg322Gln	p.R322Q	ENST00000447079	NM_015083.1	322	cGa/cAa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40478160	40478160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	70	610	0	ENST00000264657.5:c.1339C>T	p.His447Tyr	p.H447Y	ENST00000264657	NM_139276.2	447	Cac/Tac																																																																														
SPOP	8405	MSKCC	GRCh37	17	47677792	47677792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	60	512	0	ENST00000347630.2:c.1073C>T	p.Ser358Leu	p.S358L	ENST00000347630	NM_001007230.1	358	tCa/tTa																																																																														
INSR	3643	MSKCC	GRCh37	19	7267597	7267597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	99	822	0	ENST00000302850.5:c.411G>A	p.Met137Ile	p.M137I	ENST00000302850	NM_000208.2	137	atG/atA																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952217	17952217	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	76	727	0	ENST00000458235.1:c.1123C>T	p.Gln375Ter	p.Q375*	ENST00000458235	NM_000215.3	375	Cag/Tag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953330	17953330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	70	709	0	ENST00000458235.1:c.656G>A	p.Arg219Lys	p.R219K	ENST00000458235	NM_000215.3	219	aGa/aAa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45871992	45871992	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	61	617	0	ENST00000391945.4:c.256G>C	p.Glu86Gln	p.E86Q	ENST00000391945	NM_000400.3	86	Gag/Cag																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206804	36206804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	71	617	0	ENST00000300305.3:c.708G>A	p.Met236Ile	p.M236I	ENST00000300305		236	atG/atA																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175881	24175881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	52	463	0	ENST00000263121.7:c.1109G>C	p.Arg370Thr	p.R370T	ENST00000263121	NM_003073.3	370	aGg/aCg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106297	27106303	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCTGG	CTTCTGG	-			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	67	763	0	ENST00000324856.7:c.5908_5914del	p.Leu1970ThrfsTer43	p.L1970Tfs*43	ENST00000324856	NM_006015.4	1970	CTTCTGGac/ac																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	86	876	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			156	154	205	0				ENST00000310581	NM_198253.2																																																																																
POLE	5426	MSKCC	GRCh37	12	133252682	133252682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	33	585	0	ENST00000320574.5:c.1018G>C	p.Glu340Gln	p.E340Q	ENST00000320574	NM_006231.2	340	Gag/Cag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788674	3788674	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	52	377	0	ENST00000262367.5:c.4281-1G>A		p.X1427_splice	ENST00000262367	NM_004380.2	1427																																																																															
CARM1	10498	MSKCC	GRCh37	19	11019805	11019805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	55	554	0	ENST00000327064.4:c.480G>C	p.Gln160His	p.Q160H	ENST00000327064	NM_199141.1	160	caG/caC																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265452	198265452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	24	682	0	ENST00000335508.6:c.2705A>G	p.Glu902Gly	p.E902G	ENST00000335508	NM_012433.2	902	gAa/gGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	359	383	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289259	33289260	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	207	431	0	ENST00000374542.5:c.292_293del	p.Leu98ValfsTer13	p.L98Vfs*13	ENST00000374542	NM_001141970.1	98	CTg/g																																																																														
AKT3	10000	MSKCC	GRCh37	1	243736296	243736296	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	369	533	0	ENST00000263826.5:c.751T>A	p.Tyr251Asn	p.Y251N	ENST00000263826	NM_005465.4	251	Tat/Aat																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795120	242795120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1412459900		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	136	313	0	ENST00000334409.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000334409	NM_005018.2	30	aGg/aAg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670255	134670255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	609	400	0	ENST00000398015.3:c.166C>A	p.Arg56Ser	p.R56S	ENST00000398015	NM_004441.4	56	Cgc/Agc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851685	134851685	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377348490		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	603	394	0	ENST00000398015.3:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000398015	NM_004441.4	364	cGg/cAg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502609	149502609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	203	207	0	ENST00000261799.4:c.2179C>T	p.Pro727Ser	p.P727S	ENST00000261799	NM_002609.3	727	Ccc/Tcc																																																																														
IRF4	3662	MSKCC	GRCh37	6	393209	393209	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	175	435	0	ENST00000380956.4:c.57C>A	p.Cys19Ter	p.C19*	ENST00000380956	NM_001195286.1	19	tgC/tgA																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286823	33286823	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs143737807		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	342	329	0	ENST00000374542.5:c.2114G>T	p.Arg705Leu	p.R705L	ENST00000374542	NM_001141970.1	705	cGg/cTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066637	94066637	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	658	709	2	ENST00000369303.4:c.1122G>T	p.Trp374Cys	p.W374C	ENST00000369303	NM_004440.3	374	tgG/tgT																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729690	41729690	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1517	327	669	0	ENST00000242208.4:c.839G>C	p.Gly280Ala	p.G280A	ENST00000242208	NM_002192.2	280	gGa/gCa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55087040	55087040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	211	244	0	ENST00000275493.2:c.70G>T	p.Ala24Ser	p.A24S	ENST00000275493	NM_005228.3	24	Gct/Tct																																																																														
NBN	4683	MSKCC	GRCh37	8	90967783	90967783	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	89	191	0	ENST00000265433.3:c.1125G>T	p.Trp375Cys	p.W375C	ENST00000265433	NM_002485.4	375	tgG/tgT																																																																														
NBN	4683	MSKCC	GRCh37	8	90983459	90983459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	191	328	0	ENST00000265433.3:c.644G>T	p.Arg215Leu	p.R215L	ENST00000265433	NM_002485.4	215	cGg/cTg																																																																														
NBN	4683	MSKCC	GRCh37	8	90995084	90995084	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	168	210	0	ENST00000265433.3:c.38-1G>T		p.X13_splice	ENST00000265433	NM_002485.4	13																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465608	8465608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	149	530	0	ENST00000356435.5:c.3572A>G	p.Tyr1191Cys	p.Y1191C	ENST00000356435		1191	tAt/tGt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521321	8521321	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	138	342	2	ENST00000356435.5:c.917C>A	p.Ser306Ter	p.S306*	ENST00000356435		306	tCa/tAa																																																																														
RET	5979	MSKCC	GRCh37	10	43602011	43602011	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	273	371	0	ENST00000355710.3:c.1055A>C	p.His352Pro	p.H352P	ENST00000355710	NM_020975.4	352	cAt/cCt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852370	63852370	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	331	435	0	ENST00000279873.7:c.3148G>T	p.Glu1050Ter	p.E1050*	ENST00000279873	NM_032199.2	1050	Gag/Tag																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156635	2156635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	620	569	0	ENST00000434045.2:c.287C>A	p.Thr96Asn	p.T96N	ENST00000434045	NM_001127598.1	96	aCc/aAc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230370	46230370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	678	322	1	ENST00000334344.6:c.706-2A>T		p.X236_splice	ENST00000334344	NM_152641.2	236																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555662	21555662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	267	509	0	ENST00000382592.4:c.2608G>T	p.Ala870Ser	p.A870S	ENST00000382592	NM_014572.2	870	Gca/Tca																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589378	28589378	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	209	421	0	ENST00000241453.7:c.2669C>A	p.Pro890His	p.P890H	ENST00000241453	NM_004119.2	890	cCt/cAt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28592650	28592650	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	231	644	0	ENST00000241453.7:c.2495T>A	p.Leu832Ter	p.L832*	ENST00000241453	NM_004119.2	832	tTg/tAg																																																																														
MGA	23269	MSKCC	GRCh37	15	42041743	42041743	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	682	758	1	ENST00000219905.7:c.5938G>T	p.Glu1980Ter	p.E1980*	ENST00000219905	NM_001164273.1	1980	Gaa/Taa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483917	88483917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	451	477	0	ENST00000360948.2:c.1653G>T	p.Lys551Asn	p.K551N	ENST00000360948	NM_001012338.2	551	aaG/aaT																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647685	2647685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	270	539	1	ENST00000342085.4:c.1588G>T	p.Gly530Trp	p.G530W	ENST00000342085	NM_002613.4	530	Ggg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857922	9857922	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	368	366	0	ENST00000330684.3:c.3479A>C	p.Lys1160Thr	p.K1160T	ENST00000330684	NM_001134407.1	1160	aAg/aCg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020435	14020435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	159	322	0	ENST00000311895.7:c.406G>A	p.Ala136Thr	p.A136T	ENST00000311895	NM_005236.2	136	Gcc/Acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821181	72821181	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	342	575	0	ENST00000268489.5:c.10994A>T	p.Asp3665Val	p.D3665V	ENST00000268489	NM_006885.3	3665	gAc/gTc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998899	11998899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	108	338	0	ENST00000353533.5:c.401G>T	p.Arg134Leu	p.R134L	ENST00000353533	NM_003010.3	134	cGg/cTg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40379566	40379566	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1663	376	891	0	ENST00000293328.3:c.266A>T	p.His89Leu	p.H89L	ENST00000293328	NM_012448.3	89	cAc/cTc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453366	40453366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	967	744	0	ENST00000345506.4:c.1063C>A	p.Leu355Met	p.L355M	ENST00000345506	NM_003152.3	355	Ctg/Atg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1625631	1625631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	482	553	0	ENST00000344749.5:c.443A>T	p.Gln148Leu	p.Q148L	ENST00000344749	NM_001136139.2	148	cAg/cTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953337	17953337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202167678		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	385	444	0	ENST00000458235.1:c.649G>A	p.Val217Met	p.V217M	ENST00000458235	NM_000215.3	217	Gtg/Atg																																																																														
AXL	558	MSKCC	GRCh37	19	41726687	41726687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	271	504	0	ENST00000301178.4:c.232C>A	p.Leu78Ile	p.L78I	ENST00000301178	NM_021913.4	78	Ctc/Atc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50916773	50916773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	272	461	1	ENST00000440232.2:c.2245G>T	p.Ala749Ser	p.A749S	ENST00000440232	NM_002691.3	749	Gcc/Tcc																																																																														
SRC	6714	MSKCC	GRCh37	20	36031269	36031269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	214	427	0	ENST00000358208.4:c.1388G>T	p.Arg463Leu	p.R463L	ENST00000358208		463	cGg/cTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922875	39922875	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1381182530		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	377	509	0	ENST00000378444.4:c.3833G>C	p.Ser1278Thr	p.S1278T	ENST00000378444	NM_001123385.1	1278	aGt/aCt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930322	39930322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	446	631	2	ENST00000378444.4:c.3142C>A	p.Pro1048Thr	p.P1048T	ENST00000378444	NM_001123385.1	1048	Cca/Aca																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934052	39934052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	433	552	0	ENST00000378444.4:c.547G>T	p.Gly183Cys	p.G183C	ENST00000378444	NM_001123385.1	183	Ggt/Tgt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922878	44922878	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs987956112		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	606	574	0	ENST00000377967.4:c.1739G>T	p.Ser580Ile	p.S580I	ENST00000377967	NM_021140.2	580	aGc/aTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29528126	29528127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	301	365	0	ENST00000358273.4:c.1135dup	p.Cys379LeufsTer17	p.C379Lfs*17	ENST00000358273	NM_001042492.2	378	-/T																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532710	187532710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1010116749		P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	415	496	0	ENST00000441802.2:c.9683del	p.Pro3228LeufsTer42	p.P3228Lfs*42	ENST00000441802	NM_005245.3	3228	cCt/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106670	27106671	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	372	311	1	ENST00000324856.7:c.6281_6282delinsT	p.Cys2094PhefsTer41	p.C2094Ffs*41	ENST00000324856	NM_006015.4	2094	tGC/tT																																																																														
MRE11A	0	MSKCC	GRCh37	11	94209494	94209495	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0006713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	533	473	0	ENST00000323929.3:c.619_620delinsTT	p.Glu207Leu	p.E207L	ENST00000323929	NM_005591.3	207	GAg/TTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42792017	42792017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007009-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			204	648	553	0	ENST00000575354.2:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000575354	NM_015125.3	274	cGa/cAa																																																																														
AKT1	207	MSKCC	GRCh37	14	105243050	105243051	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCAGCGGATGATGAAGGTGTTGGGCCGGG			P-0007009-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	453	560	0	ENST00000349310.3:c.203_232dup	p.Pro68_Cys77dup	p.P68_C77dup	ENST00000349310	NM_001014432.1	68	ctg/cCCCGGCCCAACACCTTCATCATCCGCTGCCtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	231	248	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	187	637	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																														
IL10	3586	MSKCC	GRCh37	1	206944720	206944720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	63	190	0	ENST00000423557.1:c.206C>T	p.Ser69Phe	p.S69F	ENST00000423557	NM_000572.2	69	tCc/tTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086073	16086073	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	132	223	0	ENST00000281043.3:c.1249G>C	p.Ala417Pro	p.A417P	ENST00000281043	NM_005378.4	417	Gcc/Ccc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89457222	89457222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	115	256	0	ENST00000336596.2:c.1703G>C	p.Cys568Ser	p.C568S	ENST00000336596	NM_005233.5	568	tGt/tCt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956693	93956693	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	200	448	0	ENST00000369303.4:c.2543C>G	p.Ala848Gly	p.A848G	ENST00000369303	NM_004440.3	848	gCa/gGa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852183	63852183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	69	292	0	ENST00000279873.7:c.2961G>T	p.Arg987Ser	p.R987S	ENST00000279873	NM_032199.2	987	agG/agT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444938	49444938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	104	131	0	ENST00000301067.7:c.2528C>T	p.Ser843Phe	p.S843F	ENST00000301067	NM_003482.3	843	tCc/tTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117417	115117417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	96	264	0	ENST00000257566.3:c.757C>A	p.His253Asn	p.H253N	ENST00000257566	NM_016569.3	253	Cac/Aac																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2218080	2218080	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	252	378	1	ENST00000326181.6:c.142G>T	p.Asp48Tyr	p.D48Y	ENST00000326181	NM_032271.2	48	Gac/Tac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733244	40733244	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	39	206	0	ENST00000373198.4:c.3562C>T	p.Gln1188Ter	p.Q1188*	ENST00000373198	NM_133170.3	1188	Cag/Tag																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20153891	20153891	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	62	255	0	ENST00000379607.5:c.169A>G	p.Arg57Gly	p.R57G	ENST00000379607	NM_001412.3	57	Agg/Ggg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649664	48649664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	98	448	0	ENST00000376670.3:c.148C>A	p.Pro50Thr	p.P50T	ENST00000376670	NM_002049.3	50	Ccg/Acg																																																																														
AR	367	MSKCC	GRCh37	X	66937377	66937377	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs137852600		P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	94	444	0	ENST00000374690.3:c.2231G>T	p.Gly744Val	p.G744V	ENST00000374690	NM_000044.3	744	gGg/gTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445045	89445045	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	133	317	0	ENST00000336596.2:c.1365del	p.Leu455PhefsTer33	p.L455Ffs*33	ENST00000336596	NM_005233.5	455	ttG/tt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161325	55161326	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	41	241	0	ENST00000257290.5:c.3156_3157delinsTT	p.Gly1053Cys	p.G1053C	ENST00000257290	NM_006206.4	1052	acGGgt/acTTgt																																																																														
WT1	7490	MSKCC	GRCh37	11	32414241	32414242	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0007418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	154	357	0	ENST00000332351.3:c.1309_1310delinsAG	p.Gln437Arg	p.Q437R	ENST00000332351	NM_024426.4	437	CAg/AGg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0007966-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	236	372	1	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651292	52651292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007966-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	337	563	0	ENST00000394830.3:c.1804G>A	p.Glu602Lys	p.E602K	ENST00000394830	NM_018313.4	602	Gag/Aag																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498752	246498752	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1306095883		P-0007966-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	383	662	0	ENST00000388985.4:c.253C>T	p.Arg85Trp	p.R85W	ENST00000388985		85	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859827	151859827	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007966-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	210	468	0	ENST00000262189.6:c.10835del	p.Arg3612LysfsTer18	p.R3612Kfs*18	ENST00000262189	NM_170606.2	3612	aGa/aa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152007064	152007064	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007966-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	298	420	0	ENST00000262189.6:c.836C>G	p.Ser279Ter	p.S279*	ENST00000262189	NM_170606.2	279	tCa/tGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	53	153	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	67	459	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179050	123179050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	107	400	0	ENST00000218089.9:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000218089	NM_001042749.1	167	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057788	27057788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748935625		P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			941	177	869	0	ENST00000324856.7:c.1496C>T	p.Ser499Leu	p.S499L	ENST00000324856	NM_006015.4	499	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087360	27087360	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	106	523	0	ENST00000324856.7:c.1934C>A	p.Ser645Ter	p.S645*	ENST00000324856	NM_006015.4	645	tCa/tAa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738853	145738853	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			739	112	875	0	ENST00000428558.2:c.2212A>G	p.Lys738Glu	p.K738E	ENST00000428558	NM_004260.3	738	Aaa/Gaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691139	18691139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	101	576	0	ENST00000266497.5:c.3250G>C	p.Glu1084Gln	p.E1084Q	ENST00000266497		1084	Gag/Cag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246543	46246543	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	80	295	0	ENST00000334344.6:c.4637A>G	p.Asn1546Ser	p.N1546S	ENST00000334344	NM_152641.2	1546	aAt/aGt																																																																														
MGA	23269	MSKCC	GRCh37	15	41962061	41962061	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	73	567	1	ENST00000219905.7:c.969G>C	p.Lys323Asn	p.K323N	ENST00000219905	NM_001164273.1	323	aaG/aaC																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820624	3820624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			835	128	795	1	ENST00000262367.5:c.2827C>T	p.Gln943Ter	p.Q943*	ENST00000262367	NM_004380.2	943	Cag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900873	3900873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			748	262	728	0	ENST00000262367.5:c.223C>T	p.Arg75Ter	p.R75*	ENST00000262367	NM_004380.2	75	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038729	47038729	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	119	361	0	ENST00000329236.7:c.505A>T	p.Lys169Ter	p.K169*	ENST00000329236	NM_001204466.1	169	Aag/Tag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	79	391	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246027140	246027140	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1326631387		P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	101	652	3	ENST00000388985.4:c.862G>A	p.Glu288Lys	p.E288K	ENST00000388985		288	Gaa/Aaa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127933423	127933423	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012663-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			614	44	592	0	ENST00000373547.4:c.112G>C	p.Glu38Gln	p.E38Q	ENST00000373547	NM_002721.4	38	Gag/Cag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372206	55372206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	67	88	0	ENST00000297316.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000297316	NM_022454.3	299	gCg/gTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856520	45856520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751318902		P-0013299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1362	180	503	1	ENST00000391945.4:c.1738G>A	p.Ala580Thr	p.A580T	ENST00000391945	NM_000400.3	580	Gcc/Acc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905098	50905098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			985	169	510	0	ENST00000440232.2:c.380C>T	p.Ala127Val	p.A127V	ENST00000440232	NM_002691.3	127	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579524	7579540	+	frameshift_variant	Frame_Shift_Del	DEL	TGAACCATTGTTCAATA	TGAACCATTGTTCAATA	-			P-0013299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	355	471	1	ENST00000269305.4:c.147_163del	p.Ile50Ter	p.I50*	ENST00000269305	NM_001126112.2	49	gaTATTGAACAATGGTTCAct/gact																																																																														
PALB2	79728	MSKCC	GRCh37	16	23649444	23649444	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	47	177	0	ENST00000261584.4:c.55G>C	p.Glu19Gln	p.E19Q	ENST00000261584	NM_024675.3	19	Gag/Cag																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78727943	78727943	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			676	57	343	0	ENST00000306801.3:c.788T>G	p.Phe263Cys	p.F263C	ENST00000306801	NM_020761.2	263	tTc/tGc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593652	55593653	+	inframe_insertion	In_Frame_Ins	INS	-	-	AACACAACTTCCTTATGATCACAAATGGGAGTTTCCCAG			P-0014722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	75	513	0	ENST00000288135.5:c.1721_1759dup	p.Thr574_Arg586dup	p.T574_R586dup	ENST00000288135	NM_000222.2	574	cca/ccAACACAACTTCCTTATGATCACAAATGGGAGTTTCCCAGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	279	527	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0016138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	177	557	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131977992	131977992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	132	405	0	ENST00000265335.6:c.3875A>G	p.Asn1292Ser	p.N1292S	ENST00000265335		1292	aAc/aGc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740581	58740581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs35491690		P-0016138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	334	494	0	ENST00000305921.3:c.1486A>G	p.Ile496Val	p.I496V	ENST00000305921	NM_003620.3	496	Att/Gtt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932770	49932770	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	210	543	0	ENST00000296474.3:c.3101G>C	p.Cys1034Ser	p.C1034S	ENST00000296474	NM_002447.2	1034	tGt/tCt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430773	181430774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	252	510	0	ENST00000325404.1:c.627dup	p.Met210HisfsTer100	p.M210Hfs*100	ENST00000325404	NM_003106.3	209	tcc/tCcc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	81	380	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	130	594	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217330	11217330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	119	535	0	ENST00000361445.4:c.4348T>G	p.Tyr1450Asp	p.Y1450D	ENST00000361445	NM_004958.3	1450	Tat/Gat																																																																														
ATM	472	MSKCC	GRCh37	11	108153536	108153536	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs370974808		P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	99	459	0	ENST00000278616.4:c.3676G>C	p.Asp1226His	p.D1226H	ENST00000278616	NM_000051.3	1226	Gat/Cat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211024	36211024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	115	684	1	ENST00000222270.7:c.775G>A	p.Val259Met	p.V259M	ENST00000222270	NM_014727.1	259	Gtg/Atg																																																																														
CIC	23152	MSKCC	GRCh37	19	42798127	42798127	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	88	468	0	ENST00000575354.2:c.4081del	p.Glu1361SerfsTer54	p.E1361Sfs*54	ENST00000575354	NM_015125.3	1361	Gag/ag																																																																														
INHA	3623	MSKCC	GRCh37	2	220440025	220440025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	129	790	2	ENST00000243786.2:c.878G>A	p.Gly293Asp	p.G293D	ENST00000243786	NM_002191.3	293	gGt/gAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41265630	41266188	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGT	CCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGT	-			P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	188	261	0	ENST00000349496.5:c.13+60_187del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71019884	71019884	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	G			P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	40	229	0	ENST00000318789.4:c.1722+3A>C		p.X574_splice	ENST00000318789	NM_032682.5	574																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732826	44732837	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCTG	CCGCCGCCGCTG	-	rs749062014		P-0017037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	71	273	0	ENST00000377967.4:c.40_51del	p.Ala14_Ala17del	p.A14_A17del	ENST00000377967	NM_021140.2	10	aCCGCCGCCGCTGcc/acc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	528	479	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	107	308	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	131	338	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	131	338	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	131	338	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
EP300	2033	MSKCC	GRCh37	22	41525914	41525914	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs773503228		P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	73	448	1	ENST00000263253.7:c.1189C>T	p.Arg397Ter	p.R397*	ENST00000263253	NM_001429.3	397	Cga/Tga																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24145561	24145561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	54	460	0	ENST00000263121.7:c.580G>C	p.Glu194Gln	p.E194Q	ENST00000263121	NM_003073.3	194	Gag/Cag																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981586	101981586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1319669560		P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	31	252	0	ENST00000282441.5:c.7C>T	p.Pro3Ser	p.P3S	ENST00000282441	NM_001130145.2	3	Ccc/Tcc																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250728	26250728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	45	230	0	ENST00000446824.2:c.106G>A	p.Val36Met	p.V36M	ENST00000446824	NM_021018.2	36	Gtg/Atg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958195	2958195	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1443	169	442	0	ENST00000396946.4:c.2537T>G	p.Leu846Arg	p.L846R	ENST00000396946	NM_032415.4	846	cTg/cGg																																																																														
BTK	695	MSKCC	GRCh37	X	100611083	100611083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	291	587	1	ENST00000308731.7:c.1523C>A	p.Ala508Asp	p.A508D	ENST00000308731	NM_000061.2	508	gCc/gAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0019459-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			804	13	557	3	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0019459-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	158	292	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241722	55241722	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1051753269		P-0019459-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	280	523	2	ENST00000275493.2:c.2170G>A	p.Gly724Ser	p.G724S	ENST00000275493	NM_005228.3	724	Ggc/Agc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0019459-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	188	510	1	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366883	40366883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019459-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	293	499	4	ENST00000397332.2:c.314C>A	p.Ser105Tyr	p.S105Y	ENST00000397332	NM_001033082.2	105	tCc/tAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70357753	70357753	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019459-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	392	404	1	ENST00000374080.3:c.6004C>T	p.Gln2002Ter	p.Q2002*	ENST00000374080		2002	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	248	1036	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PAK7	0	MSKCC	GRCh37	20	9520114	9520114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	121	546	0	ENST00000353224.5:c.2155C>T	p.His719Tyr	p.H719Y	ENST00000353224	NM_177990.2	719	Cac/Tac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602334	10602334	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1379198956		P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	248	1150	1	ENST00000171111.5:c.1244G>A	p.Arg415His	p.R415H	ENST00000171111	NM_203500.1	415	cGc/cAc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792245	33792245	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1437	255	850	0	ENST00000498907.2:c.1076G>C	p.Ter359SerextTer36	p.*359Sext*36	ENST00000498907	NM_004364.3	359	tGa/tCa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906633	32906633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	43	554	0	ENST00000380152.3:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000380152		340	Gaa/Aaa																																																																														
SDHB	6390	MSKCC	GRCh37	1	17355105	17355105	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	39	721	0	ENST00000375499.3:c.413A>T	p.Asp138Val	p.D138V	ENST00000375499	NM_003000.2	138	gAt/gTt																																																																														
TET1	80312	MSKCC	GRCh37	10	70332109	70332109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	23	256	0	ENST00000373644.4:c.14G>T	p.Arg5Leu	p.R5L	ENST00000373644	NM_030625.2	5	cGc/cTc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742480	17742480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	134	984	0	ENST00000250003.3:c.662G>T	p.Arg221Leu	p.R221L	ENST00000250003	NM_002478.4	221	cGg/cTg																																																																														
CCND2	894	MSKCC	GRCh37	12	4398099	4398099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	166	835	0	ENST00000261254.3:c.663C>A	p.Ser221Arg	p.S221R	ENST00000261254	NM_001759.3	221	agC/agA																																																																														
POLE	5426	MSKCC	GRCh37	12	133235935	133235935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	148	831	0	ENST00000320574.5:c.3221T>C	p.Leu1074Pro	p.L1074P	ENST00000320574	NM_006231.2	1074	cTg/cCg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907112	32907112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	66	662	0	ENST00000380152.3:c.1497G>C	p.Gln499His	p.Q499H	ENST00000380152		499	caG/caC																																																																														
RB1	5925	MSKCC	GRCh37	13	48937070	48937070	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	72	430	1	ENST00000267163.4:c.838G>T	p.Glu280Ter	p.E280*	ENST00000267163	NM_000321.2	280	Gaa/Taa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66782879	66782879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	63	783	0	ENST00000307102.5:c.1108G>C	p.Asp370His	p.D370H	ENST00000307102	NM_002755.3	370	Gat/Cat																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67459186	67459186	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	180	764	0	ENST00000327367.4:c.602A>T	p.Asp201Val	p.D201V	ENST00000327367	NM_005902.3	201	gAc/gTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476397	88476397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	35	762	0	ENST00000360948.2:c.1735C>A	p.Leu579Met	p.L579M	ENST00000360948	NM_001012338.2	579	Ctg/Atg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3652196	3652196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	88	1198	0	ENST00000294008.3:c.873G>T	p.Lys291Asn	p.K291N	ENST00000294008	NM_032444.2	291	aaG/aaT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817750	3817750	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1397325627		P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	58	920	0	ENST00000262367.5:c.3221C>T	p.Ser1074Leu	p.S1074L	ENST00000262367	NM_004380.2	1074	tCa/tTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821632	72821632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	12	124	0	ENST00000268489.5:c.10543G>T	p.Gly3515Cys	p.G3515C	ENST00000268489	NM_006885.3	3515	Ggc/Tgc																																																																														
RARA	5914	MSKCC	GRCh37	17	38512371	38512371	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1449127199		P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	83	880	0	ENST00000254066.5:c.1282G>T	p.Gly428Trp	p.G428W	ENST00000254066	NM_000964.3	428	Ggg/Tgg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698159	47698159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	45	649	0	ENST00000233146.2:c.1717G>T	p.Ala573Ser	p.A573S	ENST00000233146	NM_000251.2	573	Gcc/Tcc																																																																														
CRKL	1399	MSKCC	GRCh37	22	21272248	21272248	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	36	565	0	ENST00000354336.3:c.26C>G	p.Ser9Trp	p.S9W	ENST00000354336	NM_005207.3	9	tCg/tGg																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99812476	99812476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	98	506	0	ENST00000280892.6:c.193C>G	p.Leu65Val	p.L65V	ENST00000280892	NM_001130678.1	65	Ctc/Gtc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295436	1295436	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	24	107	0				ENST00000310581	NM_198253.2																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56160622	56160622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	58	488	0	ENST00000399503.3:c.896A>G	p.Tyr299Cys	p.Y299C	ENST00000399503	NM_005921.1	299	tAt/tGt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592161	67592161	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	25	319	0	ENST00000274335.5:c.1977C>A	p.Cys659Ter	p.C659*	ENST00000274335		659	tgC/tgA																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250597	26250597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	57	822	0	ENST00000446824.2:c.237C>G	p.Phe79Leu	p.F79L	ENST00000446824	NM_021018.2	79	ttC/ttG																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200021	138200021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	121	573	0	ENST00000237289.4:c.1439G>T	p.Ser480Ile	p.S480I	ENST00000237289	NM_001270507.1	480	aGc/aTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68981331	68981331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	40	653	0	ENST00000288368.4:c.1403C>T	p.Thr468Ile	p.T468I	ENST00000288368	NM_024870.2	468	aCa/aTa																																																																														
NBN	4683	MSKCC	GRCh37	8	90993107	90993107	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	64	463	0	ENST00000265433.3:c.335C>A	p.Pro112His	p.P112H	ENST00000265433	NM_002485.4	112	cCt/cAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499787	8499787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	70	805	1	ENST00000356435.5:c.2182G>A	p.Val728Ile	p.V728I	ENST00000356435		728	Gtt/Att																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98232124	98232124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	34	668	0	ENST00000331920.6:c.1818G>T	p.Arg606Ser	p.R606S	ENST00000331920	NM_000264.3	606	agG/agT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	322	802	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0021575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	384	905	3	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089705	27089706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1286891446		P-0021575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	289	769	0	ENST00000324856.7:c.2666dup	p.Met890HisfsTer46	p.M890Hfs*46	ENST00000324856	NM_006015.4	887	-/G																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873003	134873003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	248	750	0	ENST00000398015.3:c.1307C>T	p.Thr436Ile	p.T436I	ENST00000398015	NM_004441.4	436	aCc/aTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11291431	11291431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	300	796	1	ENST00000361445.4:c.2575A>G	p.Arg859Gly	p.R859G	ENST00000361445	NM_004958.3	859	Agg/Ggg																																																																														
BCL6	604	MSKCC	GRCh37	3	187446261	187446261	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs535108808		P-0021575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	847	873	0	ENST00000232014.4:c.1427C>T	p.Thr476Met	p.T476M	ENST00000232014	NM_001130845.1	476	aCg/aTg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38632026	38632026	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	227	974	0	ENST00000299084.4:c.512C>G	p.Ser171Ter	p.S171*	ENST00000299084	NM_152594.2	171	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577554	7577554	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	367	931	0	ENST00000269305.4:c.727del	p.Met243TrpfsTer4	p.M243Wfs*4	ENST00000269305	NM_001126112.2	243	Atg/tg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	138	442	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061185	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCACTTGAAGCGCTTCTG	GCACTTGAAGCGCTTCTG	-			P-0021788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	124	518	0	ENST00000250448.2:c.787_804del	p.Gln263_Cys268del	p.Q263_C268del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGC/-																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58734012	58734012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753470217		P-0021788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	168	556	0	ENST00000305921.3:c.1070G>A	p.Arg357His	p.R357H	ENST00000305921	NM_003620.3	357	cGc/cAc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25497878	25497878	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	219	718	0	ENST00000264709.3:c.571C>T	p.Gln191Ter	p.Q191*	ENST00000264709	NM_175629.2	191	Cag/Tag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	145	604	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	16	470	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	940	727	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	191	774	14	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	126	396	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
PAK7	0	MSKCC	GRCh37	20	9525104	9525104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	343	619	3	ENST00000353224.5:c.1781C>T	p.Ser594Phe	p.S594F	ENST00000353224	NM_177990.2	594	tCc/tTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405968	157405968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	216	646	1	ENST00000346085.5:c.2210C>T	p.Pro737Leu	p.P737L	ENST00000346085	NM_020732.3	737	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	211	323	2				ENST00000310581	NM_198253.2																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	352	709	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42851110	42851110	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	143	589	0	ENST00000398585.3:c.783del	p.Lys261AsnfsTer19	p.K261Nfs*19	ENST00000398585	NM_001135099.1	261	aaA/aa																																																																														
STK40	83931	MSKCC	GRCh37	1	36809763	36809763	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	235	764	0	ENST00000373129.3:c.842A>C	p.Glu281Ala	p.E281A	ENST00000373129	NM_032017.1	281	gAg/gCg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885538	111885538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	229	780	1	ENST00000341259.2:c.1315C>T	p.His439Tyr	p.H439Y	ENST00000341259	NM_005475.2	439	Cac/Tac																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437122	110437122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	52	114	0	ENST00000375856.3:c.1279C>A	p.His427Asn	p.H427N	ENST00000375856	NM_003749.2	427	Cac/Aac																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761252	59761252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	200	802	2	ENST00000259008.2:c.3155A>G	p.Lys1052Arg	p.K1052R	ENST00000259008	NM_032043.2	1052	aAa/aGa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289701	15289701	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	81	842	0	ENST00000263388.2:c.3770A>G	p.His1257Arg	p.H1257R	ENST00000263388	NM_000435.2	1257	cAt/cGt																																																																														
ALK	238	MSKCC	GRCh37	2	29416137	29416137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	173	598	2	ENST00000389048.3:c.4816G>A	p.Asp1606Asn	p.D1606N	ENST00000389048	NM_004304.4	1606	Gat/Aat																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663295	227663295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753900721		P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	156	576	2	ENST00000305123.5:c.160C>T	p.Arg54Trp	p.R54W	ENST00000305123	NM_005544.2	54	Cgg/Tgg																																																																														
TP63	8626	MSKCC	GRCh37	3	189590669	189590669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	339	552	0	ENST00000264731.3:c.1234G>A	p.Glu412Lys	p.E412K	ENST00000264731	NM_003722.4	412	Gaa/Aaa																																																																														
JUN	3725	MSKCC	GRCh37	1	59248153	59248154	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGCC			P-0022184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	17	92	0	ENST00000371222.2:c.585_589dup	p.Phe197TrpfsTer31	p.F197Wfs*31	ENST00000371222	NM_002228.3	197	ttt/tGGCCTtt																																																																														
MGA	23269	MSKCC	GRCh37	15	42019410	42019410	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs528009988		P-0022184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	90	586	0	ENST00000219905.7:c.3463C>T	p.Arg1155Ter	p.R1155*	ENST00000219905	NM_001164273.1	1155	Cga/Tga																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18272263	18272263	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1255802241		P-0022184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	16	16	0	ENST00000222254.8:c.773C>T	p.Pro258Leu	p.P258L	ENST00000222254	NM_005027.3	258	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175180	112175180	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	16	288	0	ENST00000257430.4:c.3889G>C	p.Asp1297His	p.D1297H	ENST00000257430	NM_000038.5	1297	Gat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	622	651	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1023835002		P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	155	440	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913500		P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	229	270	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846325	156846325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	333	713	0	ENST00000524377.1:c.1766T>C	p.Phe589Ser	p.F589S	ENST00000524377	NM_002529.3	589	tTt/tCt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861939	57861939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	192	478	0	ENST00000228682.2:c.1242del	p.Lys415ArgfsTer15	p.K415Rfs*15	ENST00000228682	NM_005269.2	414	Ccc/cc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29002024	29002024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	100	492	0	ENST00000282397.4:c.1141G>T	p.Ala381Ser	p.A381S	ENST00000282397	NM_002019.4	381	Gct/Tct																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217107	66217107	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	135	374	0	ENST00000273854.3:c.2508G>T	p.Arg836Ser	p.R836S	ENST00000273854	NM_004439.5	836	agG/agT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532804	187532804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	207	581	0	ENST00000441802.2:c.9589C>A	p.Leu3197Ile	p.L3197I	ENST00000441802	NM_005245.3	3197	Ctc/Atc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046334	69046334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	474	471	0	ENST00000288368.4:c.3807G>T	p.Gln1269His	p.Q1269H	ENST00000288368	NM_024870.2	1269	caG/caT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	246	741	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	532	898	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755455183		P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	101	879	3	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																														
ARAF	369	MSKCC	GRCh37	X	47422697	47422697	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	178	788	0	ENST00000377045.4:c.169G>C	p.Asp57His	p.D57H	ENST00000377045	NM_001654.4	57	Gac/Cac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711962	89711962	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	52	583	0	ENST00000371953.3:c.580T>G	p.Leu194Val	p.L194V	ENST00000371953	NM_000314.4	194	Ttg/Gtg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16042482	16042482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	20	717	0	ENST00000268712.3:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000268712	NM_006311.3	398	Cgg/Tgg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090530	71090530	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	45	606	0	ENST00000318789.4:c.818C>G	p.Pro273Arg	p.P273R	ENST00000318789	NM_032682.5	273	cCa/cGa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930345	39930345	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	88	813	0	ENST00000378444.4:c.3119A>C	p.Asp1040Ala	p.D1040A	ENST00000378444	NM_001123385.1	1040	gAc/gCc																																																																														
ARAF	369	MSKCC	GRCh37	X	47424269	47424269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	191	853	1	ENST00000377045.4:c.274G>A	p.Glu92Lys	p.E92K	ENST00000377045	NM_001654.4	92	Gaa/Aaa																																																																														
ARAF	369	MSKCC	GRCh37	X	47424669	47424669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	185	863	2	ENST00000377045.4:c.477G>T	p.Gln159His	p.Q159H	ENST00000377045	NM_001654.4	159	caG/caT																																																																														
ARAF	369	MSKCC	GRCh37	X	47424682	47424682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	184	882	0	ENST00000377045.4:c.490G>A	p.Gly164Ser	p.G164S	ENST00000377045	NM_001654.4	164	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	46	1037	1	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	180	427	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361255	66361255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	30	290	0	ENST00000273854.3:c.917G>A	p.Arg306Lys	p.R306K	ENST00000273854	NM_004439.5	306	aGa/aAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189412	56189412	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	180	566	0	ENST00000399503.3:c.4444C>T	p.Arg1482Ter	p.R1482*	ENST00000399503	NM_005921.1	1482	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830976	72830976	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	202	443	0	ENST00000268489.5:c.5605C>T	p.Gln1869Ter	p.Q1869*	ENST00000268489	NM_006885.3	1869	Cag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229292	36229292	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	66	628	0	ENST00000222270.7:c.7982C>G	p.Ser2661Cys	p.S2661C	ENST00000222270	NM_014727.1	2661	tCt/tGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	16	163	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	38	204	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	12	213	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600392	10600392	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	97	433	1	ENST00000171111.5:c.1463A>T	p.Glu488Val	p.E488V	ENST00000171111	NM_203500.1	488	gAg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112102932	112102932	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			76	23	179	0	ENST00000257430.4:c.271del	p.Met91CysfsTer34	p.M91Cfs*34	ENST00000257430	NM_000038.5	89	tcA/tc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426737	47426737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200106543		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	60	321	1	ENST00000377045.4:c.982C>T	p.Arg328Trp	p.R328W	ENST00000377045	NM_001654.4	328	Cgg/Tgg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	33	486	3	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245927443	245927443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	47	269	0	ENST00000388985.4:c.1085del	p.Phe362SerfsTer12	p.F362Sfs*12	ENST00000388985		362	tTc/tc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300076	137300076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373515948		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	65	493	2	ENST00000481739.1:c.361G>A	p.Ala121Thr	p.A121T	ENST00000481739	NM_002957.4	121	Gcc/Acc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704499	117704499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			127	20	132	0	ENST00000368508.3:c.2477C>T	p.Pro826Leu	p.P826L	ENST00000368508	NM_002944.2	826	cCt/cTt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109769	115109769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	102	496	1	ENST00000257566.3:c.2109del	p.Met704CysfsTer185	p.M704Cfs*185	ENST00000257566	NM_016569.3	703	tcC/tc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097022	11097044	+	protein_altering_variant	In_Frame_Del	DEL	ATTTAACCAGAACCAGCTGCACC	ATTTAACCAGAACCAGCTGCACC	GCACG			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	72	498	2	ENST00000344626.4:c.513_535delinsGCACG	p.Phe172_Gln179delinsHisGlu	p.F172_Q179delinsHE	ENST00000344626	NM_003072.3	171	ccATTTAACCAGAACCAGCTGCACCag/ccGCACGag																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815712	32815712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1374606443		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	74	370	0	ENST00000354258.4:c.1904G>A	p.Arg635His	p.R635H	ENST00000354258	NM_000593.5	635	cGc/cAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409042	139409042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	83	533	0	ENST00000277541.6:c.2127C>G	p.His709Gln	p.H709Q	ENST00000277541	NM_017617.3	709	caC/caG																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262463	16262463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			106	30	113	0	ENST00000375759.3:c.9728C>T	p.Pro3243Leu	p.P3243L	ENST00000375759	NM_015001.2	3243	cCc/cTc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78425922	78425923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	26	176	0	ENST00000370768.2:c.1522dup	p.Gln508ProfsTer17	p.Q508Pfs*17	ENST00000370768	NM_003902.3	508	cag/cCag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981887	201981887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			610	43	468	0	ENST00000359651.3:c.598G>T	p.Gly200Trp	p.G200W	ENST00000359651		200	Ggg/Tgg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575147	64575147	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886039414		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	31	222	0	ENST00000337652.1:c.675G>A	p.Trp225Ter	p.W225*	ENST00000337652	NM_130803.2	225	tgG/tgA																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643682	38643682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	44	281	0	ENST00000299084.4:c.1152G>T	p.Glu384Asp	p.E384D	ENST00000299084	NM_152594.2	384	gaG/gaT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984856	9984856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	58	233	0	ENST00000330684.3:c.1109G>A	p.Arg370Gln	p.R370Q	ENST00000330684	NM_001134407.1	370	cGg/cAg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654633	67654633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	50	193	2	ENST00000264010.4:c.1120A>G	p.Thr374Ala	p.T374A	ENST00000264010	NM_006565.3	374	Act/Gct																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942073	81942073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	19	285	0	ENST00000359376.3:c.1610T>C	p.Val537Ala	p.V537A	ENST00000359376	NM_002661.3	537	gTg/gCg																																																																														
AXL	558	MSKCC	GRCh37	19	41765802	41765802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	34	170	0	ENST00000301178.4:c.2678G>T	p.Gly893Val	p.G893V	ENST00000301178	NM_021913.4	893	gGt/gTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288989	212288989	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	26	205	0	ENST00000342788.4:c.2757A>C	p.Lys919Asn	p.K919N	ENST00000342788	NM_005235.2	919	aaA/aaC																																																																														
EP300	2033	MSKCC	GRCh37	22	41513480	41513480	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1244840343		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	24	283	0	ENST00000263253.7:c.384G>T	p.Gln128His	p.Q128H	ENST00000263253	NM_001429.3	128	caG/caT																																																																														
KDR	3791	MSKCC	GRCh37	4	55974007	55974007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	68	313	0	ENST00000263923.4:c.1309T>C	p.Tyr437His	p.Y437H	ENST00000263923	NM_002253.2	437	Tac/Cac																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911200	29911200	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs199474540		P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	26	283	0	ENST00000376809.5:c.499A>C	p.Thr167Pro	p.T167P	ENST00000376809	NM_002116.7	167	Acc/Ccc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508284	106508284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	27	134	0	ENST00000359195.3:c.278C>A	p.Pro93Gln	p.P93Q	ENST00000359195	NM_002649.2	93	cCg/cAg																																																																														
MET	4233	MSKCC	GRCh37	7	116395457	116395458	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	47	208	0	ENST00000397752.3:c.1752_1753del	p.Cys584TrpfsTer10	p.C584Wfs*10	ENST00000397752	NM_000245.2	584	TGt/t																																																																														
JAK2	3717	MSKCC	GRCh37	9	5055689	5055689	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			56	19	147	0	ENST00000381652.3:c.960del	p.Pro321LeufsTer22	p.P321Lfs*22	ENST00000381652	NM_004972.3	319	gaT/ga																																																																														
FANCC	2176	MSKCC	GRCh37	9	97912238	97912238	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	58	245	0	ENST00000289081.3:c.653A>C	p.Glu218Ala	p.E218A	ENST00000289081	NM_000136.2	218	gAg/gCg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321300	1321300	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	51	254	0	ENST00000381566.1:c.455A>T	p.Tyr152Phe	p.Y152F	ENST00000381566		152	tAc/tTc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426421	47426421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	52	357	0	ENST00000377045.4:c.764G>T	p.Arg255Leu	p.R255L	ENST00000377045	NM_001654.4	255	cGg/cTg																																																																														
BTK	695	MSKCC	GRCh37	X	100617634	100617634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	41	357	0	ENST00000308731.7:c.435C>G	p.Cys145Trp	p.C145W	ENST00000308731	NM_000061.2	145	tgC/tgG																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220506	123220506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025917-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	40	280	0	ENST00000218089.9:c.3163G>T	p.Asp1055Tyr	p.D1055Y	ENST00000218089	NM_001042749.1	1055	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0025958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	1504	871	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11291371	11291371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	174	640	0	ENST00000361445.4:c.2635G>A	p.Gly879Ser	p.G879S	ENST00000361445	NM_004958.3	879	Ggt/Agt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255068	16255068	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	132	550	0	ENST00000375759.3:c.2333A>T	p.Asp778Val	p.D778V	ENST00000375759	NM_015001.2	778	gAc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919101	178919101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541134560		P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	56	104	0	ENST00000263967.3:c.586G>A	p.Val196Ile	p.V196I	ENST00000263967	NM_006218.2	196	Gta/Ata																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526648	106526648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	110	188	0	ENST00000359195.3:c.2941G>A	p.Glu981Lys	p.E981K	ENST00000359195	NM_002649.2	981	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	146	287	0	ENST00000269305.4:c.560-2A>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511645	46511645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	322	332	0	ENST00000262741.5:c.1132G>A	p.Gly378Ser	p.G378S	ENST00000262741	NM_003629.3	378	Ggt/Agt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418679	49418696	+	inframe_deletion	In_Frame_Del	DEL	CAGCCTCTTTTCTCATGG	CAGCCTCTTTTCTCATGG	-			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	116	270	0	ENST00000301067.7:c.15818_15835del	p.Ala5273_Ala5278del	p.A5273_A5278del	ENST00000301067	NM_003482.3	5273	gCCATGAGAAAAGAGGCTGac/gac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778390	3778390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	186	403	0	ENST00000262367.5:c.6658G>T	p.Gly2220Cys	p.G2220C	ENST00000262367	NM_004380.2	2220	Ggc/Tgc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246871	41246871	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1376262238		P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	68	120	0	ENST00000357654.3:c.677G>A	p.Cys226Tyr	p.C226Y	ENST00000357654	NM_007294.3	226	tGt/tAt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56414877	56414877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	157	281	0	ENST00000348428.3:c.2278G>T	p.Val760Phe	p.V760F	ENST00000348428	NM_006785.3	760	Gtt/Ttt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281213	46281213	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148634537		P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	137	254	0	ENST00000371998.3:c.4010C>T	p.Ser1337Leu	p.S1337L	ENST00000371998		1337	tCg/tTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31483733	31483733	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	54	111	0	ENST00000344624.3:c.1999C>G	p.Pro667Ala	p.P667A	ENST00000344624		667	Cct/Gct																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509244	106509244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	120	294	0	ENST00000359195.3:c.1238G>C	p.Trp413Ser	p.W413S	ENST00000359195	NM_002649.2	413	tGg/tCg																																																																														
MET	4233	MSKCC	GRCh37	7	116340239	116340239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	80	164	0	ENST00000397752.3:c.1101C>G	p.Ile367Met	p.I367M	ENST00000397752	NM_000245.2	367	atC/atG																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164586	36164586	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1253570532		P-0026906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	23	362	0	ENST00000300305.3:c.1289C>T	p.Pro430Leu	p.P430L	ENST00000300305		430	cCg/cTg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115279467	115279467	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			106	492	545	0	ENST00000438362.2:c.550del	p.Tyr184IlefsTer2	p.Y184Ifs*2	ENST00000438362	NM_001242891.1	184	Tat/at																																																																														
RB1	5925	MSKCC	GRCh37	13	49039146	49039146	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1060503083		P-0026906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			67	223	283	0	ENST00000267163.4:c.2224G>T	p.Val742Phe	p.V742F	ENST00000267163	NM_000321.2	742	Gtt/Ttt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593598	55593645	+	inframe_deletion	In_Frame_Del	DEL	TACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACA	TACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACA	-			P-0026906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	273	472	0	ENST00000288135.5:c.1666_1713del	p.Gln556_Ile571del	p.Q556_I571del	ENST00000288135	NM_000222.2	555	gTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACAta/gta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0027541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	71	493	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	146	490	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	108	556	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	176	402	1				ENST00000310581	NM_198253.2																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	51	450	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	143	393	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779780		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	240	592	0	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	114	469	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711368	114711368	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	16	184	0	ENST00000543371.1:c.381+2T>G		p.X127_splice	ENST00000543371	NM_001198531.1	127																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863266	57863266	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149950420		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	75	542	0	ENST00000228682.2:c.1361C>T	p.Pro454Leu	p.P454L	ENST00000228682	NM_005269.2	454	cCg/cTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115111969	115111969	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	93	587	0	ENST00000257566.3:c.1770+1G>C		p.X590_splice	ENST00000257566	NM_016569.3	590																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923807	72923807	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766702555		P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	67	529	0	ENST00000268489.5:c.3271G>A	p.Val1091Ile	p.V1091I	ENST00000268489	NM_006885.3	1091	Gtt/Att																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267215	41267215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	143	418	0	ENST00000349496.5:c.799G>A	p.Glu267Lys	p.E267K	ENST00000349496	NM_001904.3	267	Gaa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142242845	142242845	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	57	478	0	ENST00000350721.4:c.4142T>C	p.Phe1381Ser	p.F1381S	ENST00000350721	NM_001184.3	1381	tTt/tCt																																																																														
APC	324	MSKCC	GRCh37	5	112174119	112174120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	129	379	0	ENST00000257430.4:c.2831dup	p.Asn944LysfsTer2	p.N944Kfs*2	ENST00000257430	NM_000038.5	943	tca/tcAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	116	387	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123788	11123788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1064795105		P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	206	438	0	ENST00000344626.4:c.2438C>T	p.Ser813Leu	p.S813L	ENST00000344626	NM_003072.3	813	tCa/tTa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098959	178098959	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519921		P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	117	233	0	ENST00000397062.3:c.86A>G	p.Asp29Gly	p.D29G	ENST00000397062	NM_006164.4	29	gAt/gGt																																																																														
STK11	6794	MSKCC	GRCh37	19	1223104	1223109	+	inframe_deletion	In_Frame_Del	DEL	GGACGA	GGACGA	-	rs762810203		P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	347	573	0	ENST00000326873.7:c.1051_1056del	p.Glu351_Asp352del	p.E351_D352del	ENST00000326873	NM_000455.4	347	gcGGACGAg/gcg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65349014	65349014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	206	323	0	ENST00000342505.4:c.151G>T	p.Gly51Cys	p.G51C	ENST00000342505	NM_002227.2	51	Ggc/Tgc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834528	156834528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1405	323	692	3	ENST00000524377.1:c.296T>A	p.Val99Glu	p.V99E	ENST00000524377	NM_002529.3	99	gTg/gAg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646738	23646738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs929474806		P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	247	563	0	ENST00000261584.4:c.1129C>T	p.Gln377Ter	p.Q377*	ENST00000261584	NM_024675.3	377	Caa/Taa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350861	89350861	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	44	729	0	ENST00000301030.4:c.2089G>C	p.Glu697Gln	p.E697Q	ENST00000301030	NM_001256183.1	697	Gaa/Caa																																																																														
STK11	6794	MSKCC	GRCh37	19	1220697	1221719	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTCGGCTGGGGTCACCCTGTAAGTGCCCCGCCCCCCCGGGCACTCACCACACGCACACTCCGAGGGGCCTCTGCGTCTTGGGCAGCTGCCGGCCTGTGGGCGCAGGGCGTGGCCACCGGCCCAGACCCTCTCTGGCCACAGCCGCTAGGGGGTGCTTACTTTATGGAAATGTAACTCATACGGCAGATGGTGGTTCACCCGTGTGAAGTGCAGCCTGGCCCGTCAGGGATCTTCACAGAGTGGCACGGCCGACCCTCCTCCCAGAGCCCCACAGGGAAGCTGGGCGGGTGACAGCAGCTCCAGGCCCCTTCCCCGGGTGGGTCCAGAGGACACTCCCCTCCTACCCCGTAGCCTCCACTAGTGGAAGGTGGTGAAGACAGAGGTGTCCTTGAGTCCACAGGGCCTCTGGTCCAGCAGCCACGGGACGCCTCTGTCCCTGGGGTAGAGCTGGGGCTCCTAGGGCGTCAACCACCTTGACTGACCACGCCTTTCTTCCCTCCCCTCGAAATGAAGCTACAACATCACCACGGGTCTGTACCCCTTCGAAGGGGACAACATCTACAAGTTGTTTGAGAACATCGGGAAGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCCGCTCTCTGACCTGCTGAAAGGTGGGAGCCTCATCCCTCTGCCCGCAGCCCCAGGGAGGCGGGGCTTTTGTGCAGAAATGTAGGGTTGGGGGTGTCAGGTGGGGGGCTATTGGCCCCGAGACCCCAGCAGGCATTGAGAGGACTGAGTGGAGAGGCCGACCTCCCCGCAGGGCCTGGTTTGCCAGGTCCCTCAGCTCCACCCTGCTTCTGGGCCCTGTTCACCCTCCGAACTCCCACCCCAGAGGGCAGTGCTGCCCTGCGCCTCCCCCAGCCCCACCCTCGGGGGCTCCCTGGCTTGCAGGGTCTGTCAGGGTTGTCCTGCTGCACTTCCTACGCATGGCAGCAGGTGGCACTGGCCGTCCGTCCATCTGCCCAGTGGCCTTGGGAGAACGGAACCGCCC	TGGTCGGCTGGGGTCACCCTGTAAGTGCCCCGCCCCCCCGGGCACTCACCACACGCACACTCCGAGGGGCCTCTGCGTCTTGGGCAGCTGCCGGCCTGTGGGCGCAGGGCGTGGCCACCGGCCCAGACCCTCTCTGGCCACAGCCGCTAGGGGGTGCTTACTTTATGGAAATGTAACTCATACGGCAGATGGTGGTTCACCCGTGTGAAGTGCAGCCTGGCCCGTCAGGGATCTTCACAGAGTGGCACGGCCGACCCTCCTCCCAGAGCCCCACAGGGAAGCTGGGCGGGTGACAGCAGCTCCAGGCCCCTTCCCCGGGTGGGTCCAGAGGACACTCCCCTCCTACCCCGTAGCCTCCACTAGTGGAAGGTGGTGAAGACAGAGGTGTCCTTGAGTCCACAGGGCCTCTGGTCCAGCAGCCACGGGACGCCTCTGTCCCTGGGGTAGAGCTGGGGCTCCTAGGGCGTCAACCACCTTGACTGACCACGCCTTTCTTCCCTCCCCTCGAAATGAAGCTACAACATCACCACGGGTCTGTACCCCTTCGAAGGGGACAACATCTACAAGTTGTTTGAGAACATCGGGAAGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCCGCTCTCTGACCTGCTGAAAGGTGGGAGCCTCATCCCTCTGCCCGCAGCCCCAGGGAGGCGGGGCTTTTGTGCAGAAATGTAGGGTTGGGGGTGTCAGGTGGGGGGCTATTGGCCCCGAGACCCCAGCAGGCATTGAGAGGACTGAGTGGAGAGGCCGACCTCCCCGCAGGGCCTGGTTTGCCAGGTCCCTCAGCTCCACCCTGCTTCTGGGCCCTGTTCACCCTCCGAACTCCCACCCCAGAGGGCAGTGCTGCCCTGCGCCTCCCCCAGCCCCACCCTCGGGGGCTCCCTGGCTTGCAGGGTCTGTCAGGGTTGTCCTGCTGCACTTCCTACGCATGGCAGCAGGTGGCACTGGCCGTCCGTCCATCTGCCCAGTGGCCTTGGGAGAACGGAACCGCCC	-			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	339	657	0	ENST00000326873.7:c.718_863-226del		p.X240_splice	ENST00000326873	NM_000455.4	240																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713411	40713411	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	261	544	1	ENST00000373198.4:c.4104del	p.Lys1369SerfsTer30	p.K1369Sfs*30	ENST00000373198	NM_133170.3	1368	tcC/tc																																																																														
RAC2	5880	MSKCC	GRCh37	22	37622806	37622806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	696	653	0	ENST00000249071.6:c.486G>C	p.Gln162His	p.Q162H	ENST00000249071	NM_002872.4	162	caG/caC																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670844	134670844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	176	314	0	ENST00000398015.3:c.755G>T	p.Arg252Leu	p.R252L	ENST00000398015	NM_004441.4	252	cGa/cTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467690	66467690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	140	276	1	ENST00000273854.3:c.579G>T	p.Met193Ile	p.M193I	ENST00000273854	NM_004439.5	193	atG/atT																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003194	143003194	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	159	346	1	ENST00000262992.4:c.2632T>A	p.Cys878Ser	p.C878S	ENST00000262992	NM_001101669.1	878	Tgc/Agc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441973	6441973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	369	664	0	ENST00000356142.4:c.532G>A	p.Ala178Thr	p.A178T	ENST00000356142	NM_018890.3	178	Gcg/Acg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	63	698	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	68	861	0	ENST00000269305.4:c.326T>A	p.Phe109Tyr	p.F109Y	ENST00000269305	NM_001126112.2	109	tTc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs760043106		P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			70	290	474	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	115	284	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272206	15272206	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765403158		P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	83	394	1	ENST00000263388.2:c.6233G>A	p.Arg2078Gln	p.R2078Q	ENST00000263388	NM_000435.2	2078	cGg/cAg																																																																														
RB1	5925	MSKCC	GRCh37	13	49033889	49033889	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			49	151	302	0	ENST00000267163.4:c.2027del	p.Leu676Ter	p.L676*	ENST00000267163	NM_000321.2	676	Tta/ta																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420203	88420203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			103	145	325	0	ENST00000360948.2:c.2483G>C	p.Gly828Ala	p.G828A	ENST00000360948	NM_001012338.2	828	gGg/gCg																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73774732	73774732	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			63	43	121	0	ENST00000254810.4:c.355A>T	p.Thr119Ser	p.T119S	ENST00000254810	NM_005324.3	119	Acc/Tcc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273255	198273255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	81	364	0	ENST00000335508.6:c.955G>T	p.Gly319Cys	p.G319C	ENST00000335508	NM_012433.2	319	Ggt/Tgt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660923	227660923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	91	451	0	ENST00000305123.5:c.2532G>C	p.Lys844Asn	p.K844N	ENST00000305123	NM_005544.2	844	aaG/aaC																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662388	227662388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	80	372	1	ENST00000305123.5:c.1067C>T	p.Ala356Val	p.A356V	ENST00000305123	NM_005544.2	356	gCc/gTc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871316	35871316	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	113	233	4	ENST00000303115.3:c.537+1G>T		p.X179_splice	ENST00000303115	NM_002185.3	179																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32164726	32164726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	195	458	0	ENST00000375023.3:c.5176G>T	p.Asp1726Tyr	p.D1726Y	ENST00000375023	NM_004557.3	1726	Gac/Tac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168689	32168689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	210	546	1	ENST00000375023.3:c.4234C>A	p.Leu1412Ile	p.L1412I	ENST00000375023	NM_004557.3	1412	Ctt/Att																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370780	55370780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	348	278	0	ENST00000297316.4:c.82G>T	p.Gly28Cys	p.G28C	ENST00000297316	NM_022454.3	28	Ggc/Tgc																																																																														
MED12	9968	MSKCC	GRCh37	X	70355087	70355087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	106	543	0	ENST00000374080.3:c.5009C>T	p.Ser1670Phe	p.S1670F	ENST00000374080		1670	tCc/tTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76907844	76907844	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			46	19	102	0	ENST00000373344.5:c.4318-1G>T		p.X1440_splice	ENST00000373344	NM_000489.3	1440																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445208	49445234	+	inframe_deletion	In_Frame_Del	DEL	GACAGGTGCGGCTCCTCAGGCCGGGGT	GACAGGTGCGGCTCCTCAGGCCGGGGT	-	rs398123736		P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	38	584	0	ENST00000301067.7:c.2232_2258del	p.Arg755_Pro763del	p.R755_P763del	ENST00000301067	NM_003482.3	744	tcACCCCGGCCTGAGGAGCCGCACCTGTCc/tcc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30303565	30303565	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029455-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			32	11	32	0	ENST00000322652.5:c.849A>T	p.Arg283Ser	p.R283S	ENST00000322652	NM_015355.2	283	agA/agT																																																																														
BLM	641	MSKCC	GRCh37	15	91303421	91303421	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	31	212	0	ENST00000355112.3:c.1132C>A	p.His378Asn	p.H378N	ENST00000355112	NM_000057.2	378	Cac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0029514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	500	265	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17387681	17387681	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs896271183		P-0029514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	264	357	0	ENST00000359435.4:c.749A>G	p.Asn250Ser	p.N250S	ENST00000359435	NM_001033549.1	250	aAt/aGt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441623	6441623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	253	292	0	ENST00000356142.4:c.470C>G	p.Thr157Ser	p.T157S	ENST00000356142	NM_018890.3	157	aCc/aGc																																																																														
ABL1	25	MSKCC	GRCh37	9	133755988	133755988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1463481185		P-0029514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	249	272	1	ENST00000318560.5:c.1615G>A	p.Ala539Thr	p.A539T	ENST00000318560	NM_005157.4	539	Gca/Aca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023644	27023662	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCCTCCCTCCTCCAGC	GCCGCCTCCCTCCTCCAGC	-			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	27	409	0	ENST00000324856.7:c.753_771del	p.Ser254ProfsTer103	p.S254Pfs*103	ENST00000324856	NM_006015.4	250	aaGCCGCCTCCCTCCTCCAGC/aa																																																																														
ATM	472	MSKCC	GRCh37	11	108186749	108186749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	35	494	0	ENST00000278616.4:c.6107A>C	p.Tyr2036Ser	p.Y2036S	ENST00000278616	NM_000051.3	2036	tAt/tCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	50	522	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	48	462	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46298737	46298737	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	43	341	1	ENST00000334344.6:c.5384A>G	p.Asn1795Ser	p.N1795S	ENST00000334344	NM_152641.2	1795	aAt/aGt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646419	23646419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057520736		P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	35	516	0	ENST00000261584.4:c.1448C>T	p.Ser483Leu	p.S483L	ENST00000261584	NM_024675.3	483	tCa/tTa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56367676	56367676	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs560703292		P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	24	246	0	ENST00000348428.3:c.502C>A	p.Pro168Thr	p.P168T	ENST00000348428	NM_006785.3	168	Cca/Aca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272066	15272066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	54	624	1	ENST00000263388.2:c.6373G>T	p.Gly2125Trp	p.G2125W	ENST00000263388	NM_000435.2	2125	Ggg/Tgg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945910	17945910	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201000040		P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	75	702	3	ENST00000458235.1:c.2029G>A	p.Ala677Thr	p.A677T	ENST00000458235	NM_000215.3	677	Gct/Act																																																																														
ALK	238	MSKCC	GRCh37	2	29917793	29917793	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs149145987		P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	53	601	0	ENST00000389048.3:c.875G>T	p.Arg292Leu	p.R292L	ENST00000389048	NM_004304.4	292	cGc/cTc																																																																														
MET	4233	MSKCC	GRCh37	7	116380989	116380989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	54	536	0	ENST00000397752.3:c.1611G>C	p.Gln537His	p.Q537H	ENST00000397752	NM_000245.2	537	caG/caC																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128419986	128419986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	61	703	0	ENST00000265960.3:c.442C>T	p.Gln148Ter	p.Q148*	ENST00000265960	NM_001006617.1	148	Cag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044965	47044965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	81	370	0	ENST00000329236.7:c.2057G>T	p.Cys686Phe	p.C686F	ENST00000329236	NM_001204466.1	686	tGc/tTc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260046	19260046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	95	625	2	ENST00000162023.5:c.247G>A	p.Asp83Asn	p.D83N	ENST00000162023		83	Gac/Aac																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413742	138413742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769082299		P-0031396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	46	472	0	ENST00000289153.2:c.1778C>T	p.Ala593Val	p.A593V	ENST00000289153	NM_006219.2	593	gCg/gTg																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025952	1025952	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	42	550	0	ENST00000358495.3:c.578G>C	p.Arg193Thr	p.R193T	ENST00000358495	NM_134424.2	193	aGa/aCa																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923408	36923408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79813621		P-0031396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	55	858	2	ENST00000358127.4:c.854C>T	p.Thr285Ile	p.T285I	ENST00000358127	NM_001280556.1	285	aCc/aTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189456453	189456453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	57	300	0	ENST00000264731.3:c.214A>G	p.Ile72Val	p.I72V	ENST00000264731	NM_003722.4	72	Att/Gtt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	130	334	0				ENST00000310581	NM_198253.2																																																																																
FAT1	2195	MSKCC	GRCh37	4	187584629	187584629	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1479462211		P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	108	454	0	ENST00000441802.2:c.3404A>G	p.Asn1135Ser	p.N1135S	ENST00000441802	NM_005245.3	1135	aAt/aGt																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910647	29910647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	158	734	0	ENST00000376809.5:c.187G>A	p.Asp63Asn	p.D63N	ENST00000376809	NM_002116.7	63	Gac/Aac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032594	47032594	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	202	322	0	ENST00000329236.7:c.269del	p.Ser90Ter	p.S90*	ENST00000329236	NM_001204466.1	90	tCa/ta																																																																														
TET1	80312	MSKCC	GRCh37	10	70405181	70405181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	82	331	0	ENST00000373644.4:c.2695C>G	p.Gln899Glu	p.Q899E	ENST00000373644	NM_030625.2	899	Caa/Gaa																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514296	69514296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	93	581	0	ENST00000294312.3:c.385G>C	p.Asp129His	p.D129H	ENST00000294312	NM_005117.2	129	Gat/Cat																																																																														
SESN3	143686	MSKCC	GRCh37	11	94926629	94926629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	37	443	0	ENST00000536441.1:c.136G>A	p.Glu46Lys	p.E46K	ENST00000536441	NM_144665.3	46	Gag/Aag																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112919983	112919983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	172	562	0	ENST00000351677.2:c.1198G>A	p.Glu400Lys	p.E400K	ENST00000351677	NM_002834.3	400	Gaa/Aaa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557711	21557711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	117	588	0	ENST00000382592.4:c.2134C>T	p.His712Tyr	p.H712Y	ENST00000382592	NM_014572.2	712	Cac/Tac																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646384	23646384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	80	548	0	ENST00000261584.4:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000261584	NM_024675.3	495	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29541604	29541604	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs1060500331		P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	25	122	0	ENST00000358273.4:c.1527+1G>T		p.X509_splice	ENST00000358273	NM_001042492.2	509																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248530	212248530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	201	561	0	ENST00000342788.4:c.3737G>T	p.Ser1246Ile	p.S1246I	ENST00000342788	NM_005235.2	1246	aGc/aTc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502843	186502843	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	83	389	0	ENST00000323963.5:c.301G>T	p.Glu101Ter	p.E101*	ENST00000323963		101	Gag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509975	187509975	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	89	344	0	ENST00000441802.2:c.13538G>C	p.Arg4513Thr	p.R4513T	ENST00000441802	NM_005245.3	4513	aGa/aCa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178032	56178032	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	56	283	0	ENST00000399503.3:c.3005C>G	p.Ser1002Cys	p.S1002C	ENST00000399503	NM_005921.1	1002	tCt/tGt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979221	93979221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	26	229	0	ENST00000369303.4:c.1607A>T	p.Glu536Val	p.E536V	ENST00000369303	NM_004440.3	536	gAg/gTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987322	2987322	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs758661288		P-0031912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	81	594	0	ENST00000396946.4:c.107A>G	p.Tyr36Cys	p.Y36C	ENST00000396946	NM_032415.4	36	tAt/tGt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950561	38950561	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201384226		P-0032095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	81	622	0	ENST00000357387.3:c.3389G>A	p.Arg1130Gln	p.R1130Q	ENST00000357387	NM_152756.3	1130	cGa/cAa																																																																														
ALK	238	MSKCC	GRCh37	2	29917736	29917736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150966028		P-0032095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	83	722	0	ENST00000389048.3:c.932G>A	p.Arg311His	p.R311H	ENST00000389048	NM_004304.4	311	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108142111	108142111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	72	473	0	ENST00000278616.4:c.3055C>T	p.Leu1019Phe	p.L1019F	ENST00000278616	NM_000051.3	1019	Ctt/Ttt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392854	118392866	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCGCCAAGAAA	TGGCGCCAAGAAA	-			P-0032095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	128	456	0	ENST00000534358.1:c.11888_11900del	p.Gly3963AlafsTer5	p.G3963Afs*5	ENST00000534358	NM_005933.3	3962	tgTGGCGCCAAGAAA/tg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420450	49420450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	67	683	0	ENST00000301067.7:c.15299C>A	p.Ala5100Asp	p.A5100D	ENST00000301067	NM_003482.3	5100	gCc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579543	7579573	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCGGGGACAGCATCAAATCATCCATTGCT	GTCCGGGGACAGCATCAAATCATCCATTGCT	-			P-0032095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	326	841	0	ENST00000269305.4:c.114_144del	p.Ala39IlefsTer74	p.A39Ifs*74	ENST00000269305	NM_001126112.2	38	caAGCAATGGATGATTTGATGCTGTCCCCGGAC/ca																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223469	2223469	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1462122341		P-0032095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	31	330	0	ENST00000398665.3:c.3580G>A	p.Glu1194Lys	p.E1194K	ENST00000398665	NM_032482.2	1194	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030841	69030841	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	53	426	1	ENST00000288368.4:c.3383A>T	p.Gln1128Leu	p.Q1128L	ENST00000288368	NM_024870.2	1128	cAg/cTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413989	139413990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	105	811	0	ENST00000277541.6:c.770dup	p.Asn257LysfsTer74	p.N257Kfs*74	ENST00000277541	NM_017617.3	257	aat/aaAt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0032252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	13	429	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913281		P-0032252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	115	328	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
CCND1	595	MSKCC	GRCh37	11	69466000	69466000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			10866	598	618	0	ENST00000227507.2:c.838G>A	p.Glu280Lys	p.E280K	ENST00000227507	NM_053056.2	280	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965011	15965011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	36	570	0	ENST00000268712.3:c.5585A>G	p.Glu1862Gly	p.E1862G	ENST00000268712	NM_006311.3	1862	gAa/gGa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278114	41278114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	70	388	0	ENST00000349496.5:c.1990G>A	p.Glu664Lys	p.E664K	ENST00000349496	NM_001904.3	664	Gag/Aag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162609	47162609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	166	408	0	ENST00000409792.3:c.3517C>T	p.His1173Tyr	p.H1173Y	ENST00000409792	NM_014159.6	1173	Cat/Tat																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71019939	71019942	+	frameshift_variant	Frame_Shift_Del	DEL	TTAA	TTAA	-			P-0032252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	106	171	0	ENST00000318789.4:c.1667_1670del	p.Ile556LysfsTer42	p.I556Kfs*42	ENST00000318789	NM_032682.5	556	aTTAAa/aa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938406	44938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	172	197	0	ENST00000377967.4:c.2954C>T	p.Ser985Phe	p.S985F	ENST00000377967	NM_021140.2	985	tCt/tTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	88	438	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	291	374	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	112	229	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	107	220	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120733	115120733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	128	506	0	ENST00000257566.3:c.273G>C	p.Lys91Asn	p.K91N	ENST00000257566	NM_016569.3	91	aaG/aaC																																																																														
SETD8	0	MSKCC	GRCh37	12	123873988	123873988	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	10	27	0	ENST00000330479.4:c.19A>T	p.Met7Leu	p.M7L	ENST00000330479	NM_020382.3	7	Atg/Ttg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132583	11132583	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	203	586	0	ENST00000344626.4:c.2799C>G	p.Phe933Leu	p.F933L	ENST00000344626	NM_003072.3	933	ttC/ttG																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044942	47044942	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	419	370	0	ENST00000329236.7:c.2034G>A	p.Trp678Ter	p.W678*	ENST00000329236	NM_001204466.1	678	tgG/tgA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488657	212488657	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374970657		P-0032263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	133	466	0	ENST00000342788.4:c.2192C>T	p.Thr731Met	p.T731M	ENST00000342788	NM_005235.2	731	aCg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108115559	108115559	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	142	596	0	ENST00000278616.4:c.707T>G	p.Leu236Arg	p.L236R	ENST00000278616	NM_000051.3	236	cTt/cGt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443866	52443866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	224	715	0	ENST00000460680.1:c.29G>A	p.Ser10Asn	p.S10N	ENST00000460680	NM_004656.3	10	aGc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782144		P-0032265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	141	743	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564530	86564530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	47	492	0	ENST00000274376.6:c.266del	p.Gly89GlufsTer7	p.G89Efs*7	ENST00000274376	NM_002890.2	88	Ggg/gg																																																																														
TET2	54790	MSKCC	GRCh37	4	106197365	106197365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	45	291	0	ENST00000380013.4:c.5698G>T	p.Val1900Phe	p.V1900F	ENST00000380013	NM_001127208.2	1900	Gtc/Ttc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610615	10610615	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	84	537	0	ENST00000171111.5:c.95T>G	p.Met32Arg	p.M32R	ENST00000171111	NM_203500.1	32	aTg/aGg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913400		P-0032277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	54	258	0	ENST00000349496.5:c.98C>A	p.Ser33Tyr	p.S33Y	ENST00000349496	NM_001904.3	33	tCt/tAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0032277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	105	508	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
MYC	4609	MSKCC	GRCh37	8	128750683	128750683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	75	467	0	ENST00000377970.2:c.220C>T	p.Pro74Ser	p.P74S	ENST00000377970	NM_002467.4	74	Ccg/Tcg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0032277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	174	643	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202918		P-0032277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	89	335	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27058072	27058072	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	73	338	0	ENST00000324856.7:c.1780C>T	p.Gln594Ter	p.Q594*	ENST00000324856	NM_006015.4	594	Cag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591129	67591130	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0032277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	25	204	0	ENST00000274335.5:c.1723_1724del	p.Lys575AspfsTer26	p.K575Dfs*26	ENST00000274335		574	agAAag/agag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717748	89717749	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	71	317	0	ENST00000371953.3:c.775dup	p.His259ProfsTer39	p.H259Pfs*39	ENST00000371953	NM_000314.4	258	ttc/ttCc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136259	2136259	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	116	553	0	ENST00000219476.3:c.4730del	p.Gly1577AlafsTer8	p.G1577Afs*8	ENST00000219476	NM_000548.3	1576	acG/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	15	908	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	28	808	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs786201995		P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	20	842	0	ENST00000371953.3:c.70G>C	p.Asp24His	p.D24H	ENST00000371953	NM_000314.4	24	Gac/Cac																																																																														
AGO2	27161	MSKCC	GRCh37	8	141557668	141557668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	42	1324	0	ENST00000220592.5:c.1647G>A	p.Met549Ile	p.M549I	ENST00000220592	NM_012154.3	549	atG/atA																																																																														
XPO1	7514	MSKCC	GRCh37	2	61706065	61706065	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	24	885	1	ENST00000401558.2:c.3106G>T	p.Glu1036Ter	p.E1036*	ENST00000401558	NM_003400.3	1036	Gaa/Taa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61706089	61706089	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	21	770	0	ENST00000401558.2:c.3082G>T	p.Glu1028Ter	p.E1028*	ENST00000401558	NM_003400.3	1028	Gaa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165233	47165233	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	56	744	0	ENST00000409792.3:c.893T>C	p.Ile298Thr	p.I298T	ENST00000409792	NM_014159.6	298	aTt/aCt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185165702	185165702	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	32	579	0	ENST00000265026.3:c.977G>C	p.Arg326Pro	p.R326P	ENST00000265026	NM_004721.4	326	cGg/cCg																																																																														
FAM175A	0	MSKCC	GRCh37	4	84383891	84383891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	43	1187	0	ENST00000321945.7:c.961G>T	p.Asp321Tyr	p.D321Y	ENST00000321945	NM_139076.2	321	Gac/Tac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040958	47040977	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTCGCGCCCAGCCTGGTG	CTCTCGCGCCCAGCCTGGTG	-			P-0032292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	81	743	0	ENST00000329236.7:c.1256_1275del	p.Ser419CysfsTer14	p.S419Cfs*14	ENST00000329236	NM_001204466.1	418	ttCTCTCGCGCCCAGCCTGGTGct/ttct																																																																														
RB1	5925	MSKCC	GRCh37	13	49050864	49050864	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886042935		P-0032293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	137	298	0	ENST00000267163.4:c.2548C>T	p.Gln850Ter	p.Q850*	ENST00000267163	NM_000321.2	850	Cag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509421	106509421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751167601		P-0032293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	217	591	1	ENST00000359195.3:c.1415G>A	p.Arg472His	p.R472H	ENST00000359195	NM_002649.2	472	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0032293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	846	744	1	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484028	50484028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	322	567	0	ENST00000394963.4:c.878C>T	p.Pro293Leu	p.P293L	ENST00000394963	NM_003076.4	293	cCc/cTc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646686	23646686	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	310	607	0	ENST00000261584.4:c.1181A>G	p.His394Arg	p.H394R	ENST00000261584	NM_024675.3	394	cAt/cGt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289985	15289985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	562	817	0	ENST00000263388.2:c.3569G>C	p.Arg1190Pro	p.R1190P	ENST00000263388	NM_000435.2	1190	cGc/cCc																																																																														
TP63	8626	MSKCC	GRCh37	3	189587168	189587169	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0032293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	95	451	0	ENST00000264731.3:c.1185_1186delinsAA	p.Pro396Thr	p.P396T	ENST00000264731	NM_003722.4	395	tcCCca/tcAAca																																																																														
PREX2	80243	MSKCC	GRCh37	8	68989641	68989641	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199776134		P-0032293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	135	504	1	ENST00000288368.4:c.1579C>T	p.Arg527Cys	p.R527C	ENST00000288368	NM_024870.2	527	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389273	8389273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	159	702	1	ENST00000356435.5:c.4345G>A	p.Ala1449Thr	p.A1449T	ENST00000356435		1449	Gcc/Acc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412345	139412345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	220	677	0	ENST00000277541.6:c.1300G>T	p.Gly434Cys	p.G434C	ENST00000277541	NM_017617.3	434	Ggc/Tgc																																																																														
AR	367	MSKCC	GRCh37	X	66863212	66863212	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0032293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	268	526	0	ENST00000374690.3:c.1731T>A	p.Cys577Ter	p.C577*	ENST00000374690	NM_000044.3	577	tgT/tgA																																																																														
XIAP	331	MSKCC	GRCh37	X	123020181	123020195	+	inframe_deletion	In_Frame_Del	DEL	CTTTCCTAATTGCTT	CTTTCCTAATTGCTT	-			P-0032293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	81	714	0	ENST00000355640.3:c.673_687del	p.Pro225_Phe229del	p.P225_F229del	ENST00000355640		223	caCTTTCCTAATTGCTTc/cac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0032345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	126	434	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241711	55241711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	128	442	0	ENST00000275493.2:c.2159C>T	p.Ser720Phe	p.S720F	ENST00000275493	NM_005228.3	720	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	103	378	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088723	27088723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	77	446	0	ENST00000324856.7:c.2332G>T	p.Gly778Ter	p.G778*	ENST00000324856	NM_006015.4	778	Gga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108121619	108121619	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	66	402	0	ENST00000278616.4:c.1430del	p.Lys477SerfsTer5	p.K477Sfs*5	ENST00000278616	NM_000051.3	476	cAa/ca																																																																														
WT1	7490	MSKCC	GRCh37	11	32456268	32456268	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs775333473		P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	74	500	0	ENST00000332351.3:c.624C>A	p.Ser208Arg	p.S208R	ENST00000332351	NM_024426.4	208	agC/agA																																																																														
KDM5A	5927	MSKCC	GRCh37	12	427425	427425	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	49	494	0	ENST00000399788.2:c.2744A>T	p.Gln915Leu	p.Q915L	ENST00000399788	NM_001042603.1	915	cAa/cTa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170477	11170477	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	88	452	0	ENST00000344626.4:c.4684C>T	p.Gln1562Ter	p.Q1562*	ENST00000344626	NM_003072.3	1562	Cag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509086	106509086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	61	368	1	ENST00000359195.3:c.1080G>T	p.Lys360Asn	p.K360N	ENST00000359195	NM_002649.2	360	aaG/aaT																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981484	70981484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	45	612	0	ENST00000276594.2:c.612C>A	p.Phe204Leu	p.F204L	ENST00000276594	NM_024504.3	204	ttC/ttA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0033335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	291	684	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ETV6	2120	MSKCC	GRCh37	12	11905405	11905405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	203	455	0	ENST00000396373.4:c.55C>T	p.Pro19Ser	p.P19S	ENST00000396373	NM_001987.4	19	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	641	665	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534717	18534717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	214	412	0	ENST00000266497.5:c.1775C>G	p.Ser592Cys	p.S592C	ENST00000266497		592	tCt/tGt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001245	150001245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	160	558	0	ENST00000253339.5:c.2359G>C	p.Gly787Arg	p.G787R	ENST00000253339		787	Ggg/Cgg																																																																														
NF2	4771	MSKCC	GRCh37	22	30050644	30050644	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	367	324	1	ENST00000338641.4:c.448-2A>G		p.X150_splice	ENST00000338641	NM_000268.3	150																																																																															
TET1	80312	MSKCC	GRCh37	10	70412311	70412311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	111	261	0	ENST00000373644.4:c.4421A>T	p.Lys1474Ile	p.K1474I	ENST00000373644	NM_030625.2	1474	aAa/aTa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625392	69625392	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	332	720	0	ENST00000334134.2:c.401A>G	p.Tyr134Cys	p.Y134C	ENST00000334134	NM_005247.2	134	tAc/tGc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12038864	12038864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	52	211	0	ENST00000396373.4:c.1157G>A	p.Arg386Lys	p.R386K	ENST00000396373	NM_001987.4	386	aGa/aAa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2108783	2108783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	393	770	0	ENST00000219476.3:c.884C>A	p.Ala295Asp	p.A295D	ENST00000219476	NM_000548.3	295	gCc/gAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638659	176638659	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	314	612	0	ENST00000439151.2:c.3261del	p.Glu1088ArgfsTer6	p.E1088Rfs*6	ENST00000439151	NM_022455.4	1087	Aaa/aa																																																																														
LYN	4067	MSKCC	GRCh37	8	56864634	56864634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	93	536	0	ENST00000519728.1:c.597C>G	p.Ile199Met	p.I199M	ENST00000519728	NM_002350.3	199	atC/atG																																																																														
RAD21	5885	MSKCC	GRCh37	8	117874144	117874144	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	113	413	0	ENST00000297338.2:c.310G>C	p.Ala104Pro	p.A104P	ENST00000297338	NM_006265.2	104	Gct/Cct																																																																														
AGO2	27161	MSKCC	GRCh37	8	141572649	141572649	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	296	464	1	ENST00000220592.5:c.421C>T	p.Gln141Ter	p.Q141*	ENST00000220592	NM_012154.3	141	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	33	403	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0033781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	21	574	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175769	176175774	+	inframe_deletion	In_Frame_Del	DEL	GGAGAG	GGAGAG	-			P-0033979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	30	388	0	ENST00000367669.3:c.341_346del	p.Pro114_Leu115del	p.P114_L115del	ENST00000367669	NM_022457.5	114	cCTCTCCtc/ctc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0034125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	84	320	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1057520606		P-0034125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	102	415	1	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0034130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	35	490	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662224	227662224	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	31	575	1	ENST00000305123.5:c.1231C>T	p.Arg411Ter	p.R411*	ENST00000305123	NM_005544.2	411	Cga/Tga																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519920		P-0034130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	17	288	0	ENST00000397062.3:c.85G>A	p.Asp29Asn	p.D29N	ENST00000397062	NM_006164.4	29	Gat/Aat																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719187	190719187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	17	333	0	ENST00000441310.2:c.1189G>A	p.Asp397Asn	p.D397N	ENST00000441310	NM_000534.4	397	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0034259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	675	538	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
RB1	5925	MSKCC	GRCh37	13	48954189	48954189	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0034259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	104	210	0	ENST00000267163.4:c.1390G>T	p.Glu464Ter	p.E464*	ENST00000267163	NM_000321.2	464	Gaa/Taa																																																																														
PARP1	142	MSKCC	GRCh37	1	226579978	226579978	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	211	428	0	ENST00000366794.5:c.324G>C	p.Lys108Asn	p.K108N	ENST00000366794	NM_001618.3	108	aaG/aaC																																																																														
BIRC3	330	MSKCC	GRCh37	11	102198850	102198850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	150	295	0	ENST00000263464.3:c.1021C>G	p.Leu341Val	p.L341V	ENST00000263464	NM_001165.4	341	Cta/Gta																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858551	9858551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	78	469	0	ENST00000330684.3:c.2850G>T	p.Gln950His	p.Q950H	ENST00000330684	NM_001134407.1	950	caG/caT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214893	36214893	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	445	516	1	ENST00000222270.7:c.3319A>T	p.Thr1107Ser	p.T1107S	ENST00000222270	NM_014727.1	1107	Acc/Tcc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71037197	71037197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	320	299	0	ENST00000318789.4:c.1094T>C	p.Met365Thr	p.M365T	ENST00000318789	NM_032682.5	365	aTg/aCg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341693	8341693	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0034259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	276	425	0	ENST00000356435.5:c.4947G>C	p.Lys1649Asn	p.K1649N	ENST00000356435		1649	aaG/aaC																																																																														
AR	367	MSKCC	GRCh37	X	66937342	66937342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	659	439	0	ENST00000374690.3:c.2196C>A	p.Asp732Glu	p.D732E	ENST00000374690	NM_000044.3	732	gaC/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	97	423	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220494	1220494	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519858		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	158	611	0	ENST00000326873.7:c.587G>T	p.Gly196Val	p.G196V	ENST00000326873	NM_000455.4	196	gGc/gTc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562870	21562870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1047262994		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	86	632	0	ENST00000382592.4:c.1049C>T	p.Pro350Leu	p.P350L	ENST00000382592	NM_014572.2	350	cCc/cTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156541	55156541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368266633		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	174	464	0	ENST00000257290.5:c.2942G>A	p.Arg981His	p.R981H	ENST00000257290	NM_006206.4	981	cGt/cAt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651135	206651135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	183	603	0	ENST00000367120.3:c.745G>T	p.Ala249Ser	p.A249S	ENST00000367120	NM_014002.3	249	Gcc/Tcc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483892	88483892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	81	602	0	ENST00000360948.2:c.1678C>T	p.Leu560Phe	p.L560F	ENST00000360948	NM_001012338.2	560	Ctc/Ttc																																																																														
ATM	472	MSKCC	GRCh37	11	108205780	108205780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	59	340	0	ENST00000278616.4:c.8095C>T	p.Pro2699Ser	p.P2699S	ENST00000278616	NM_000051.3	2699	Cca/Tca																																																																														
ATM	472	MSKCC	GRCh37	11	108213948	108213948	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	29	231	1	ENST00000278616.4:c.8269-1G>T		p.X2757_splice	ENST00000278616	NM_000051.3	2757																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563023	21563023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	119	590	1	ENST00000382592.4:c.896G>T	p.Gly299Val	p.G299V	ENST00000382592	NM_014572.2	299	gGc/gTc																																																																														
ALK	238	MSKCC	GRCh37	2	29443649	29443649	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs747661585		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	204	506	0	ENST00000389048.3:c.3568C>A	p.Leu1190Met	p.L1190M	ENST00000389048	NM_004304.4	1190	Ctg/Atg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825432	134825432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	81	403	0	ENST00000398015.3:c.948A>C	p.Glu316Asp	p.E316D	ENST00000398015	NM_004441.4	316	gaA/gaC																																																																														
KDR	3791	MSKCC	GRCh37	4	55948752	55948753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	121	528	0	ENST00000263923.4:c.3712dup	p.Thr1238AsnfsTer3	p.T1238Nfs*3	ENST00000263923	NM_002253.2	1238	aca/aAca																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149439365	149439365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	99	623	0	ENST00000286301.3:c.2030G>A	p.Arg677Lys	p.R677K	ENST00000286301	NM_005211.3	677	aGg/aAg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099502	157099502	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1256347904		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	51	217	0	ENST00000346085.5:c.439G>T	p.Ala147Ser	p.A147S	ENST00000346085	NM_020732.3	147	Gcg/Tcg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371681	55371681	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	163	559	0	ENST00000297316.4:c.371T>A	p.Leu124Gln	p.L124Q	ENST00000297316	NM_022454.3	124	cTg/cAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518235	8518235	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs765808310		P-0034575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	102	314	0	ENST00000356435.5:c.1156T>C	p.Tyr386His	p.Y386H	ENST00000356435		386	Tac/Cac																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138944	64138944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	22	329	0	ENST00000334205.4:c.2311C>T	p.Pro771Ser	p.P771S	ENST00000334205	NM_003942.2	771	Ccc/Tcc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6414400	6414400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	15	200	0	ENST00000356142.4:c.34G>A	p.Gly12Arg	p.G12R	ENST00000356142	NM_018890.3	12	Gga/Aga																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772605	135772605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	35	515	0	ENST00000298552.3:c.2941G>A	p.Glu981Lys	p.E981K	ENST00000298552	NM_001162426.1	981	Gaa/Aaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25994410	25994410	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	20	277	0	ENST00000435504.4:c.404-1G>A		p.X135_splice	ENST00000435504		135																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119631608	119631608	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1289744832		P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	19	288	0	ENST00000316626.5:c.658C>T	p.Arg220Trp	p.R220W	ENST00000316626		220	Cgg/Tgg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39241948	39241948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	25	216	0	ENST00000402219.2:c.1898C>T	p.Ser633Phe	p.S633F	ENST00000402219	NM_005633.3	633	tCc/tTc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739832	46739832	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	33	391	0	ENST00000371975.4:c.1634del	p.Gly545AlafsTer12	p.G545Afs*12	ENST00000371975	NM_003579.3	545	Ggc/gc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43733733	43733733	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1269254041		P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	37	350	0	ENST00000382044.4:c.3089C>T	p.Ser1030Phe	p.S1030F	ENST00000382044	NM_001141980.1	1030	tCt/tTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779205	3779206	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	28	453	1	ENST00000262367.5:c.5842_5843delinsTT	p.Pro1948Leu	p.P1948L	ENST00000262367	NM_004380.2	1948	CCg/TTg																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292729	62292729	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	64	527	0	ENST00000482936.1:c.181G>A	p.Glu61Lys	p.E61K	ENST00000482936		61	Gaa/Aaa																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326496	62326497	+	missense_variant,NMD_transcript_variant	Missense_Mutation	DNP	CC	CC	TT			P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	47	816	0	ENST00000482936.1:c.3421_3422delinsTT	p.Pro1141Leu	p.P1141L	ENST00000482936		1141	CCg/TTg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130478	29130478	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	60	558	0	ENST00000328354.6:c.232C>T	p.Gln78Ter	p.Q78*	ENST00000328354	NM_007194.3	78	Caa/Taa																																																																														
RAC2	5880	MSKCC	GRCh37	22	37628861	37628863	+	missense_variant	Missense_Mutation	ONP	GCC	GCC	TTT			P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	42	654	2	ENST00000249071.6:c.203_205delinsAAA	p.Arg68_Pro69delinsGlnThr	p.R68_P69delinsQT	ENST00000249071	NM_002872.4	68	cGGCcg/cAAAcg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930267	39930267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	43	688	1	ENST00000378444.4:c.3197C>T	p.Thr1066Ile	p.T1066I	ENST00000378444	NM_001123385.1	1066	aCc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	166	522	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	57	186	1	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	151	509	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	91	344	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910880	114910881	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	95	318	0	ENST00000543371.1:c.999_1000del	p.Ser334LysfsTer21	p.S334Kfs*21	ENST00000543371	NM_001198531.1	333	agTTca/agca																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061531	38061538	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCGGCT	GCGCGGCT	-			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	73	324	0	ENST00000250448.2:c.451_458del	p.Ser151GlyfsTer73	p.S151Gfs*73	ENST00000250448	NM_004496.3	151	AGCCGCGCg/g																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2185888	2185888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	131	477	0	ENST00000398665.3:c.160G>T	p.Ala54Ser	p.A54S	ENST00000398665	NM_032482.2	54	Gct/Tct																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713867	30713867	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	118	434	0	ENST00000359013.4:c.1267T>A	p.Phe423Ile	p.F423I	ENST00000359013	NM_001024847.2	423	Ttt/Att																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468452	89468452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	95	214	0	ENST00000336596.2:c.1986G>T	p.Lys662Asn	p.K662N	ENST00000336596	NM_005233.5	662	aaG/aaT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671913	30671913	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	153	559	0	ENST00000376406.3:c.5047A>C	p.Thr1683Pro	p.T1683P	ENST00000376406	NM_014641.2	1683	Aca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0035774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	240	769	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	48936995	48936995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587778842		P-0035774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	134	426	0	ENST00000267163.4:c.763C>T	p.Arg255Ter	p.R255*	ENST00000267163	NM_000321.2	255	Cga/Tga																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910371	29910372	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	88	800	0	ENST00000376809.5:c.46dup	p.Ala16GlyfsTer83	p.A16Gfs*83	ENST00000376809	NM_002116.7	14	tcg/tcGg																																																																														
NF1	4763	MSKCC	GRCh37	17	29556370	29556370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	147	654	0	ENST00000358273.4:c.2737A>G	p.Ile913Val	p.I913V	ENST00000358273	NM_001042492.2	913	Ata/Gta																																																																														
MET	4233	MSKCC	GRCh37	7	116411887	116411888	+	intron_variant	Intron	INS	-	-	AG			P-0035774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	1972	1087	0	ENST00000397752.3:c.2888-16_2888-15insAG		p.*963*	ENST00000397752	NM_000245.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0035792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	531	718	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879604	37879604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196929947		P-0035792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	655	715	2	ENST00000269571.5:c.1979G>A	p.Gly660Asp	p.G660D	ENST00000269571		660	gGc/gAc																																																																														
AKT2	208	MSKCC	GRCh37	19	40747938	40747938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1384	881	769	0	ENST00000392038.2:c.480G>T	p.Lys160Asn	p.K160N	ENST00000392038	NM_001626.4	160	aaG/aaT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249007	55249008	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGACAGCA			P-0035792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	406	516	0	ENST00000275493.2:c.2311_2312insGCATGGACA	p.Asp770_Asn771insSerMetAsp	p.D770_N771insSMD	ENST00000275493	NM_005228.3	769	gtg/gTGGACAGCAtg																																																																														
CD274	29126	MSKCC	GRCh37	9	5462965	5462965	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	68	277	0	ENST00000381577.3:c.526A>T	p.Ser176Cys	p.S176C	ENST00000381577	NM_014143.3	176	Agt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	79	439	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600382	10600382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	295	663	0	ENST00000171111.5:c.1473C>A	p.Tyr491Ter	p.Y491*	ENST00000171111	NM_203500.1	491	taC/taA																																																																														
CENPA	1058	MSKCC	GRCh37	2	27009108	27009108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	45	125	0	ENST00000335756.4:c.44G>A	p.Arg15Lys	p.R15K	ENST00000335756	NM_001809.3	15	aGg/aAg																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281279	49281279	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	137	738	0	ENST00000282018.3:c.326T>A	p.Leu109Gln	p.L109Q	ENST00000282018	NM_020377.2	109	cTg/cAg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40865364	40865364	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs776879514		P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	124	594	0	ENST00000428826.2:c.1067A>G	p.Lys356Arg	p.K356R	ENST00000428826		356	aAg/aGg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11106975	11106975	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	222	542	0	ENST00000344626.4:c.1680C>A	p.Tyr560Ter	p.Y560*	ENST00000344626	NM_003072.3	560	taC/taA																																																																														
ATR	545	MSKCC	GRCh37	3	142180928	142180928	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	66	298	0	ENST00000350721.4:c.7046T>G	p.Leu2349Ter	p.L2349*	ENST00000350721	NM_001184.3	2349	tTa/tGa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938516	76938516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	72	565	0	ENST00000373344.5:c.2232G>A	p.Met744Ile	p.M744I	ENST00000373344	NM_000489.3	744	atG/atA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	65	493	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	101	287	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	24	368	1	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934573		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	101	549	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057988	27057988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	51	557	0	ENST00000324856.7:c.1696C>T	p.Gln566Ter	p.Q566*	ENST00000324856	NM_006015.4	566	Cag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682381	37682381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	40	530	0	ENST00000447079.4:c.3572C>T	p.Ser1191Leu	p.S1191L	ENST00000447079	NM_015083.1	1191	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	89	409	0	ENST00000256078.4:c.99T>A	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaA																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022238	31022238	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs747847938		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	22	240	0	ENST00000375687.4:c.1723C>T	p.Gln575Ter	p.Q575*	ENST00000375687	NM_015338.5	575	Caa/Taa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737350	145737350	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs35101495		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1300	69	761	0	ENST00000428558.2:c.3337G>C	p.Gly1113Arg	p.G1113R	ENST00000428558	NM_004260.3	1113	Ggg/Cgg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895689	28895689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	109	508	0	ENST00000282397.4:c.3085C>T	p.Leu1029Phe	p.L1029F	ENST00000282397	NM_002019.4	1029	Ctt/Ttt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31394052	31394052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	46	371	1	ENST00000328111.2:c.2339C>T	p.Ser780Leu	p.S780L	ENST00000328111	NM_006892.3	780	tCg/tTg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278101	18278101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1056224197		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	115	641	1	ENST00000222254.8:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000222254	NM_005027.3	574	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057874	27057874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	71	676	0	ENST00000324856.7:c.1582C>G	p.Gln528Glu	p.Q528E	ENST00000324856	NM_006015.4	528	Cag/Gag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462990	120462990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	89	501	0	ENST00000256646.2:c.5341G>C	p.Asp1781His	p.D1781H	ENST00000256646	NM_024408.3	1781	Gat/Cat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819179	3819179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	64	444	0	ENST00000262367.5:c.3056C>G	p.Ser1019Cys	p.S1019C	ENST00000262367	NM_004380.2	1019	tCt/tGt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475130	40475130	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193922720		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	54	576	0	ENST00000264657.5:c.1780G>A	p.Glu594Lys	p.E594K	ENST00000264657	NM_139276.2	594	Gag/Aag																																																																														
EZH1	2145	MSKCC	GRCh37	17	40871125	40871125	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	41	435	0	ENST00000428826.2:c.765G>C	p.Glu255Asp	p.E255D	ENST00000428826		255	gaG/gaC																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216637	2216637	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1318769899		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	61	706	0	ENST00000398665.3:c.2281G>C	p.Glu761Gln	p.E761Q	ENST00000398665	NM_032482.2	761	Gag/Cag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163282	32163282	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1310	193	794	0	ENST00000375023.3:c.5944C>T	p.Gln1982Ter	p.Q1982*	ENST00000375023	NM_004557.3	1982	Caa/Taa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035217	6035217	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782898		P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	93	400	0	ENST00000265849.7:c.851C>T	p.Ser284Leu	p.S284L	ENST00000265849	NM_000535.5	284	tCa/tTa																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346431	152346431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	59	412	0	ENST00000359321.1:c.139C>T	p.His47Tyr	p.H47Y	ENST00000359321	NM_005431.1	47	Cat/Tat																																																																														
LYN	4067	MSKCC	GRCh37	8	56882350	56882350	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	79	571	0	ENST00000519728.1:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000519728	NM_002350.3	350	Cag/Tag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98240351	98240351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	77	383	0	ENST00000331920.6:c.1333G>T	p.Gly445Cys	p.G445C	ENST00000331920	NM_000264.3	445	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0036792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	539	777	1	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242442	55242443	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTAAAATTCCCGTCGCTA			P-0036792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1434	1775	462	2	ENST00000275493.2:c.2214_2231dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	gtt/gTTAAAATTCCCGTCGCTAtt																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200617	67200617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	195	705	3	ENST00000312629.5:c.728G>A	p.Arg243His	p.R243H	ENST00000312629	NM_003952.2	243	cGc/cAc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0036932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	144	524	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
EP300	2033	MSKCC	GRCh37	22	41527627	41527627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	94	339	0	ENST00000263253.7:c.1518G>T	p.Met506Ile	p.M506I	ENST00000263253	NM_001429.3	506	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	51	385	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	392	560	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608282	28608282	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773466203		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	98	470	2	ENST00000241453.7:c.1774G>A	p.Val592Ile	p.V592I	ENST00000241453	NM_004119.2	592	Gtt/Att																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097630	27097630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	224	359	0	ENST00000324856.7:c.3219G>A	p.Trp1073Ter	p.W1073*	ENST00000324856	NM_006015.4	1073	tgG/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1279524	1279524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774381540		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	125	570	0	ENST00000310581.5:c.2012G>A	p.Arg671Gln	p.R671Q	ENST00000310581	NM_198253.2	671	cGg/cAg																																																																														
BLM	641	MSKCC	GRCh37	15	91295106	91295106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	38	381	1	ENST00000355112.3:c.889G>A	p.Asp297Asn	p.D297N	ENST00000355112	NM_000057.2	297	Gat/Aat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198270187	198270187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	55	256	0	ENST00000335508.6:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000335508	NM_012433.2	417	Cct/Tct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260782	16260782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	236	406	0	ENST00000375759.3:c.8047G>T	p.Val2683Leu	p.V2683L	ENST00000375759	NM_015001.2	2683	Gtg/Ttg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163822	72163822	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	20	269	0	ENST00000357731.5:c.536C>A	p.Ala179Glu	p.A179E	ENST00000357731	NM_173808.2	179	gCa/gAa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865136	57865136	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	421	657	0	ENST00000228682.2:c.2613T>A	p.Asp871Glu	p.D871E	ENST00000228682	NM_005269.2	871	gaT/gaA																																																																														
FLT3	2322	MSKCC	GRCh37	13	28597579	28597579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268548071		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	61	558	0	ENST00000241453.7:c.2326G>A	p.Glu776Lys	p.E776K	ENST00000241453	NM_004119.2	776	Gaa/Aaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678455	88678455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	234	532	0	ENST00000360948.2:c.1081G>C	p.Gly361Arg	p.G361R	ENST00000360948	NM_001012338.2	361	Ggc/Cgc																																																																														
NF1	4763	MSKCC	GRCh37	17	29586097	29586115	+	frameshift_variant	Frame_Shift_Del	DEL	TATGCGGCCTTTCAATGAT	TATGCGGCCTTTCAATGAT	-			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	37	469	0	ENST00000358273.4:c.4381_4399del	p.Met1461LeufsTer2	p.M1461Lfs*2	ENST00000358273	NM_001042492.2	1460	caTATGCGGCCTTTCAATGAT/ca																																																																														
MALT1	10892	MSKCC	GRCh37	18	56412949	56412949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	60	353	0	ENST00000348428.3:c.1963G>T	p.Gly655Cys	p.G655C	ENST00000348428	NM_006785.3	655	Ggc/Tgc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728826	190728826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	31	356	0	ENST00000441310.2:c.2214G>A	p.Met738Ile	p.M738I	ENST00000441310	NM_000534.4	738	atG/atA																																																																														
BARD1	580	MSKCC	GRCh37	2	215632319	215632322	+	frameshift_variant	Frame_Shift_Del	DEL	TGCC	TGCC	-			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	209	433	0	ENST00000260947.4:c.1452_1455del	p.Lys484AsnfsTer3	p.K484Nfs*3	ENST00000260947	NM_000465.2	484	aaGGCA/aa																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794824	242794824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	265	440	0	ENST00000334409.5:c.385G>A	p.Ala129Thr	p.A129T	ENST00000334409	NM_005018.2	129	Gcc/Acc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468453	89468453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	41	238	0	ENST00000336596.2:c.1987C>A	p.Gln663Lys	p.Q663K	ENST00000336596	NM_005233.5	663	Cag/Aag																																																																														
TET2	54790	MSKCC	GRCh37	4	106157903	106157903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775589418		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	216	277	0	ENST00000380013.4:c.2804G>A	p.Gly935Glu	p.G935E	ENST00000380013	NM_001127208.2	935	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874118	151874118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	72	530	0	ENST00000262189.6:c.8420C>G	p.Ser2807Cys	p.S2807C	ENST00000262189	NM_170606.2	2807	tCt/tGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151947941	151947941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	45	416	0	ENST00000262189.6:c.1732G>C	p.Asp578His	p.D578H	ENST00000262189	NM_170606.2	578	Gat/Cat																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371626	55371626	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	435	404	0	ENST00000297316.4:c.316T>A	p.Trp106Arg	p.W106R	ENST00000297316	NM_022454.3	106	Tgg/Agg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117875449	117875449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	38	440	0	ENST00000297338.2:c.194G>T	p.Arg65Leu	p.R65L	ENST00000297338	NM_006265.2	65	cGa/cTa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740600	145740600	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs587778654		P-0037068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1693	423	508	0	ENST00000428558.2:c.1417C>G	p.Leu473Val	p.L473V	ENST00000428558	NM_004260.3	473	Ctg/Gtg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761387	59761387	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs886053214		P-0037089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	196	216	0	ENST00000259008.2:c.3020C>A	p.Ser1007Tyr	p.S1007Y	ENST00000259008	NM_032043.2	1007	tCt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0037091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	493	534	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566521	41566521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	219	276	1	ENST00000263253.7:c.4398G>T	p.Trp1466Cys	p.W1466C	ENST00000263253	NM_001429.3	1466	tgG/tgT																																																																														
RB1	5925	MSKCC	GRCh37	13	48954221	48954221	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0037091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	196	162	0	ENST00000267163.4:c.1421+1G>A		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120466428	120466428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	353	519	0	ENST00000256646.2:c.4691G>T	p.Ser1564Ile	p.S1564I	ENST00000256646	NM_024408.3	1564	aGc/aTc																																																																														
CASP8	841	MSKCC	GRCh37	2	202141561	202141561	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	245	307	0	ENST00000358485.4:c.849A>T	p.Lys283Asn	p.K283N	ENST00000358485	NM_001080125.1	283	aaA/aaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176687049	176687049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	323	452	0	ENST00000439151.2:c.5026G>T	p.Ala1676Ser	p.A1676S	ENST00000439151	NM_022455.4	1676	Gct/Tct																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815771	32815771	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	409	600	0	ENST00000354258.4:c.1845C>A	p.Tyr615Ter	p.Y615*	ENST00000354258	NM_000593.5	615	taC/taA																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192423	138192423	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs533720482		P-0037091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	160	230	0	ENST00000237289.4:c.59A>G	p.Lys20Arg	p.K20R	ENST00000237289	NM_001270507.1	20	aAg/aGg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184075	123184075	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	510	418	0	ENST00000218089.9:c.933G>C	p.Glu311Asp	p.E311D	ENST00000218089	NM_001042749.1	311	gaG/gaC																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	499	636	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372379	55372379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	235	734	0	ENST00000297316.4:c.1069G>A	p.Glu357Lys	p.E357K	ENST00000297316	NM_022454.3	357	Gag/Aag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499372	89499372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	133	344	0	ENST00000336596.2:c.2542G>A	p.Asp848Asn	p.D848N	ENST00000336596	NM_005233.5	848	Gac/Aac																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384656	31384656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	175	603	0	ENST00000328111.2:c.1358G>T	p.Gly453Val	p.G453V	ENST00000328111	NM_006892.3	453	gGg/gTg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651181	206651181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	131	715	0	ENST00000367120.3:c.791C>T	p.Pro264Leu	p.P264L	ENST00000367120	NM_014002.3	264	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	127	465	0				ENST00000310581	NM_198253.2																																																																																
KNSTRN	90417	MSKCC	GRCh37	15	40675131	40675131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745844593		P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	270	720	0	ENST00000249776.8:c.95G>A	p.Arg32Gln	p.R32Q	ENST00000249776	NM_033286.3	32	cGg/cAg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246518373	246518373	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1007512650		P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	123	439	0	ENST00000388985.4:c.188C>T	p.Ser63Phe	p.S63F	ENST00000388985		63	tCt/tTt																																																																														
BLM	641	MSKCC	GRCh37	15	91295176	91295176	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	133	296	0	ENST00000355112.3:c.959G>A	p.Ser320Asn	p.S320N	ENST00000355112	NM_000057.2	320	aGt/aAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857097	9857098	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	84	286	0	ENST00000330684.3:c.4303_4304delinsGG	p.Lys1435Gly	p.K1435G	ENST00000330684	NM_001134407.1	1435	AAg/GGg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984936	9984937	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	127	463	0	ENST00000330684.3:c.1028_1029delinsAA	p.Trp343Ter	p.W343*	ENST00000330684	NM_001134407.1	343	tGG/tAA																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645490	67645490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	95	213	0	ENST00000264010.4:c.755C>T	p.Pro252Leu	p.P252L	ENST00000264010	NM_006565.3	252	cCa/cTa																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626955	14626955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763247276		P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	213	617	1	ENST00000254322.2:c.820C>T	p.Pro274Ser	p.P274S	ENST00000254322	NM_006145.1	274	Ccc/Tcc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264964	46264964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	133	383	0	ENST00000371998.3:c.1834C>T	p.Pro612Ser	p.P612S	ENST00000371998		612	Cct/Tct																																																																														
EP300	2033	MSKCC	GRCh37	22	41547841	41547841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	95	365	0	ENST00000263253.7:c.2822C>T	p.Ser941Phe	p.S941F	ENST00000263253	NM_001429.3	941	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937004	178937004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	151	459	0	ENST00000263967.3:c.1685C>T	p.Pro562Leu	p.P562L	ENST00000263967	NM_006218.2	562	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117679034	117679034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	178	503	0	ENST00000368508.3:c.3787C>T	p.Pro1263Ser	p.P1263S	ENST00000368508	NM_002944.2	1263	Ccc/Tcc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028041	69028041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	116	429	0	ENST00000288368.4:c.3200G>A	p.Gly1067Asp	p.G1067D	ENST00000288368	NM_024870.2	1067	gGc/gAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21968229	21968229	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	128	278	0	ENST00000304494.5:c.470G>C	p.Ter157SerextTer13	p.*157Sext*13	ENST00000304494	NM_000077.4	157	tGa/tCa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21968229	21968229	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0037118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	128	278	0	ENST00000304494.5:c.470G>C	p.Ter157SerextTer13	p.*157Sext*13	ENST00000304494	NM_000077.4	157	tGa/tCa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0037145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	12	591	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519992		P-0037145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	10	579	1	ENST00000269305.4:c.641A>T	p.His214Leu	p.H214L	ENST00000269305	NM_001126112.2	214	cAt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	180	552	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143350344	143350344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	32	257	0	ENST00000262992.4:c.118C>T	p.Gln40Ter	p.Q40*	ENST00000262992	NM_001101669.1	40	Cag/Tag																																																																														
PGR	5241	MSKCC	GRCh37	11	100962554	100962554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	109	609	0	ENST00000325455.5:c.1843C>A	p.Arg615Ser	p.R615S	ENST00000325455	NM_001202474.3	615	Cgc/Agc																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281035	49281035	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	98	672	0	ENST00000282018.3:c.82A>T	p.Ser28Cys	p.S28C	ENST00000282018	NM_020377.2	28	Agc/Tgc																																																																														
MAX	4149	MSKCC	GRCh37	14	65544726	65544726	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	86	655	0	ENST00000358664.4:c.200C>G	p.Ala67Gly	p.A67G	ENST00000358664	NM_002382.4	67	gCc/gGc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024552	31024552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	128	673	0	ENST00000375687.4:c.4037C>T	p.Ser1346Phe	p.S1346F	ENST00000375687	NM_015338.5	1346	tCt/tTt																																																																														
APC	324	MSKCC	GRCh37	5	112102988	112102988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	89	479	4	ENST00000257430.4:c.323G>T	p.Gly108Val	p.G108V	ENST00000257430	NM_000038.5	108	gGa/gTa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508963	106508963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	64	412	0	ENST00000359195.3:c.957G>T	p.Arg319Ser	p.R319S	ENST00000359195	NM_002649.2	319	agG/agT																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5563181	5563182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	63	447	0	ENST00000397747.3:c.787dup	p.Thr263AsnfsTer21	p.T263Nfs*21	ENST00000397747	NM_025239.3	262	-/A																																																																														
ABL1	25	MSKCC	GRCh37	9	133759812	133759812	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs766513552		P-0037197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	126	622	0	ENST00000318560.5:c.2135G>T	p.Arg712Leu	p.R712L	ENST00000318560	NM_005157.4	712	cGc/cTc																																																																														
CCND1	595	MSKCC	GRCh37	11	69456259	69456259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	79	703	1	ENST00000227507.2:c.178G>A	p.Val60Ile	p.V60I	ENST00000227507	NM_053056.2	60	Gtc/Atc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396623	396623	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	69	914	0	ENST00000262320.3:c.403G>T	p.Glu135Ter	p.E135*	ENST00000262320	NM_003502.3	135	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs780442292		P-0037229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	294	1132	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25991668	25991668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	80	741	0	ENST00000435504.4:c.574C>A	p.Gln192Lys	p.Q192K	ENST00000435504		192	Cag/Aag																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495650	72495650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	36	445	0	ENST00000477973.2:c.420C>T	p.Thr141Ile	p.T141I	ENST00000477973	NM_012234.5	141	aCc/aTc																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197339	26197339	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	35	525	0	ENST00000356476.2:c.140T>C	p.Val47Ala	p.V47A	ENST00000356476		47	gTg/gCg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518130	8518130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	224	641	1	ENST00000356435.5:c.1261C>A	p.Pro421Thr	p.P421T	ENST00000356435		421	Ccg/Acg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0037229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	306	798	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0037229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	306	798	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0037229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	306	798	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0037230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	288	612	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579316	7579317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0037230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	439	584	1	ENST00000269305.4:c.369_370dup	p.Cys124PhefsTer47	p.C124Ffs*47	ENST00000269305	NM_001126112.2	124	tgc/tTTgc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672477	30672477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	403	868	0	ENST00000376406.3:c.4483G>C	p.Glu1495Gln	p.E1495Q	ENST00000376406	NM_014641.2	1495	Gag/Cag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021770	69021770	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	234	607	0	ENST00000288368.4:c.3059del	p.Leu1020Ter	p.L1020*	ENST00000288368	NM_024870.2	1020	Tta/ta																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28929495		P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	123	409	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	110	332	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	175	305	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
TET1	80312	MSKCC	GRCh37	10	70426931	70426931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	61	362	0	ENST00000373644.4:c.4591G>T	p.Asp1531Tyr	p.D1531Y	ENST00000373644	NM_030625.2	1531	Gac/Tac																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252963	36252963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	92	327	0	ENST00000300305.3:c.399G>T	p.Met133Ile	p.M133I	ENST00000300305		133	atG/atT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259647	89259647	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	54	257	0	ENST00000336596.2:c.791A>T	p.Glu264Val	p.E264V	ENST00000336596	NM_005233.5	264	gAa/gTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629954	187629954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	138	567	1	ENST00000441802.2:c.1028C>T	p.Thr343Ile	p.T343I	ENST00000441802	NM_005245.3	343	aCt/aTt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515579	31515579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1405504265		P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	65	257	0	ENST00000344624.3:c.1040C>T	p.Pro347Leu	p.P347L	ENST00000344624		347	cCc/cTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040716	47040716	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	127	533	0	ENST00000329236.7:c.1117G>T	p.Glu373Ter	p.E373*	ENST00000329236	NM_001204466.1	373	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	349	627	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524543	176524543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	309	730	0	ENST00000292408.4:c.2275C>A	p.Leu759Met	p.L759M	ENST00000292408	NM_213647.1	759	Ctg/Atg																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699217	117699217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	203	408	0	ENST00000369458.3:c.424A>G	p.Asn142Asp	p.N142D	ENST00000369458	NM_024626.3	142	Aac/Gac																																																																														
MTOR	2475	MSKCC	GRCh37	1	11319317	11319317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	189	581	0	ENST00000361445.4:c.150G>T	p.Met50Ile	p.M50I	ENST00000361445	NM_004958.3	50	atG/atT																																																																														
MPL	4352	MSKCC	GRCh37	1	43814550	43814550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	812	362	0	ENST00000372470.3:c.1345C>G	p.Leu449Val	p.L449V	ENST00000372470	NM_005373.2	449	Ctg/Gtg																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112767302	112767302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	112	519	0	ENST00000369452.4:c.1175C>T	p.Thr392Ile	p.T392I	ENST00000369452	NM_007373.3	392	aCa/aTa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108083	30108083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	308	491	0	ENST00000331968.5:c.724G>A	p.Gly242Ser	p.G242S	ENST00000331968	NM_002742.2	242	Ggt/Agt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81558909	81558909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	196	477	0	ENST00000298171.2:c.502C>A	p.Pro168Thr	p.P168T	ENST00000298171	NM_000369.2	168	Cct/Act																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971220	15971220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	160	403	0	ENST00000268712.3:c.4729G>T	p.Ala1577Ser	p.A1577S	ENST00000268712	NM_006311.3	1577	Gct/Tct																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78938122	78938122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	189	498	1	ENST00000306801.3:c.4000G>A	p.Val1334Ile	p.V1334I	ENST00000306801	NM_020761.2	1334	Gtc/Atc																																																																														
ALK	238	MSKCC	GRCh37	2	29917770	29917770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	208	611	1	ENST00000389048.3:c.898C>A	p.Gln300Lys	p.Q300K	ENST00000389048	NM_004304.4	300	Cag/Aag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024392	31024392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	360	588	1	ENST00000375687.4:c.3877G>T	p.Asp1293Tyr	p.D1293Y	ENST00000375687	NM_015338.5	1293	Gat/Tat																																																																														
ATR	545	MSKCC	GRCh37	3	142204075	142204075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	444	600	0	ENST00000350721.4:c.6128C>T	p.Ala2043Val	p.A2043V	ENST00000350721	NM_001184.3	2043	gCc/gTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612166	189612166	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	413	528	0	ENST00000264731.3:c.1918G>C	p.Asp640His	p.D640H	ENST00000264731	NM_003722.4	640	Gat/Cat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356171	66356171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	269	615	0	ENST00000273854.3:c.1326G>T	p.Glu442Asp	p.E442D	ENST00000273854	NM_004439.5	442	gaG/gaT																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143033817	143033817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	159	398	0	ENST00000262992.4:c.2154G>T	p.Glu718Asp	p.E718D	ENST00000262992	NM_001101669.1	718	gaG/gaT																																																																														
SMO	6608	MSKCC	GRCh37	7	128851950	128851950	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1289445585		P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	258	596	0	ENST00000249373.3:c.2022G>C	p.Lys674Asn	p.K674N	ENST00000249373	NM_005631.4	674	aaG/aaC																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492882	8492882	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	142	549	0	ENST00000356435.5:c.2447T>C	p.Leu816Pro	p.L816P	ENST00000356435		816	cTg/cCg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006896	47006896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	83	605	0	ENST00000329236.7:c.16C>T	p.Arg6Cys	p.R6C	ENST00000329236	NM_001204466.1	6	Cgt/Tgt																																																																														
MED12	9968	MSKCC	GRCh37	X	70347963	70347963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	70	523	0	ENST00000374080.3:c.3202C>A	p.Pro1068Thr	p.P1068T	ENST00000374080		1068	Ccc/Acc																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96930956	96931040	+	protein_altering_variant	In_Frame_Del	DEL	TGCAACCAGGCGGGCTCGGCGAGGGCAGTGCACAGCGCCGTGATAGACAGGGCGCCAGGCAGGGCCGAGGCCAGGCTACGCTCCG	TGCAACCAGGCGGGCTCGGCGAGGGCAGTGCACAGCGCCGTGATAGACAGGGCGCCAGGCAGGGCCGAGGCCAGGCTACGCTCCG	A			P-0037244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	146	560	0	ENST00000258439.3:c.80_164delinsT	p.Pro27_His55delinsLeu	p.P27_H55delinsL	ENST00000258439	NM_001193304.2	27	cCGGAGCGTAGCCTGGCCTCGGCCCTGCCTGGCGCCCTGTCTATCACGGCGCTGTGCACTGCCCTCGCCGAGCCCGCCTGGTTGCAc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	25	420	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0037280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	162	407	0	ENST00000288135.5:c.1669_1674del	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0037289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	143	407	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
B2M	567	MSKCC	GRCh37	15	45003746	45003746	+	start_lost	Translation_Start_Site	SNP	T	T	C	rs1057519879		P-0037289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	307	583	0	ENST00000558401.1:c.2T>C	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	aTg/aCg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	59	781	5	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52713617	52713618	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0037289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	480	514	0	ENST00000394830.3:c.110_111del	p.Arg37ThrfsTer15	p.R37Tfs*15	ENST00000394830	NM_018313.4	37	aGA/a																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505112	149505112	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	288	697	0	ENST00000261799.4:c.1703T>A	p.Val568Glu	p.V568E	ENST00000261799	NM_002609.3	568	gTg/gAg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77043912	77043912	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	441	702	0	ENST00000356341.3:c.1414G>T	p.Ala472Ser	p.A472S	ENST00000356341	NM_002576.4	472	Gcc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	213	617	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632402	3632402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750340019		P-0037297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	324	1030	1	ENST00000294008.3:c.5446G>A	p.Glu1816Lys	p.E1816K	ENST00000294008	NM_032444.2	1816	Gag/Aag																																																																														
STK11	6794	MSKCC	GRCh37	19	1220703	1220704	+	missense_variant	Missense_Mutation	DNP	GC	GC	TA			P-0037297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	417	665	1	ENST00000326873.7:c.721_722delinsTA	p.Ala241Tyr	p.A241Y	ENST00000326873	NM_000455.4	241	GCt/TAt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602637	10602644	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGGCTT	GTGGGCTT	-			P-0037297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	487	792	1	ENST00000171111.5:c.934_941del	p.Lys312AlafsTer35	p.K312Afs*35	ENST00000171111	NM_203500.1	312	AAGCCCACg/g																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427675	72427675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	365	550	0	ENST00000477973.2:c.813C>T	p.Ser272Phe	p.S272F	ENST00000477973	NM_012234.5	272	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	27	409	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	31	510	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
ATM	472	MSKCC	GRCh37	11	108139302	108139302	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3218708		P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	50	836	1	ENST00000278616.4:c.2804C>T	p.Thr935Met	p.T935M	ENST00000278616	NM_000051.3	935	aCg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214046	36214046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	65	901	2	ENST00000222270.7:c.2872G>A	p.Gly958Ser	p.G958S	ENST00000222270	NM_014727.1	958	Ggc/Agc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115263340	115263340	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	47	697	0	ENST00000438362.2:c.2012-2A>C		p.X671_splice	ENST00000438362	NM_001242891.1	671																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119734	70119734	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	46	723	1	ENST00000245479.2:c.736C>T	p.Gln246Ter	p.Q246*	ENST00000245479	NM_000346.3	246	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259278	89259278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	49	604	1	ENST00000336596.2:c.422C>A	p.Thr141Lys	p.T141K	ENST00000336596	NM_005233.5	141	aCa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	136	391	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588933	67588933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	27	204	0	ENST00000274335.5:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000274335		342	Gaa/Aaa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39537699	39537699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	62	316	0	ENST00000262039.4:c.233A>G	p.Tyr78Cys	p.Y78C	ENST00000262039	NM_002647.2	78	tAc/tGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151932982	151932982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs772146328		P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	17	34	0	ENST00000262189.6:c.2689C>T	p.Arg897Ter	p.R897*	ENST00000262189	NM_170606.2	897	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918769	32918769	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs730881550		P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	28	179	0	ENST00000380152.3:c.6916G>T	p.Ala2306Ser	p.A2306S	ENST00000380152		2306	Gct/Tct																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138677	55138677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	86	374	0	ENST00000257290.5:c.1354G>C	p.Asp452His	p.D452H	ENST00000257290	NM_006206.4	452	Gat/Cat																																																																														
AKT3	10000	MSKCC	GRCh37	1	243778453	243778453	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	36	336	0	ENST00000263826.5:c.572C>G	p.Ala191Gly	p.A191G	ENST00000263826	NM_005465.4	191	gCa/gGa																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200626	67200626	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	210	607	0	ENST00000312629.5:c.737A>T	p.His246Leu	p.H246L	ENST00000312629	NM_003952.2	246	cAc/cTc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589847	69589848	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	10	21	0	ENST00000168712.1:c.5_6delinsTT	p.Ser2Phe	p.S2F	ENST00000168712	NM_002007.2	2	tCG/tTT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911310	32911310	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs80358532		P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	70	395	0	ENST00000380152.3:c.2818C>T	p.Gln940Ter	p.Q940*	ENST00000380152		940	Caa/Taa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14038693	14038693	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587777943		P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	52	249	0	ENST00000311895.7:c.2017+1G>A		p.X673_splice	ENST00000311895	NM_005236.2	673																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993425	72993425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	310	705	0	ENST00000268489.5:c.620G>C	p.Trp207Ser	p.W207S	ENST00000268489	NM_006885.3	207	tGg/tCg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40872297	40872297	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1296856855		P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	168	577	0	ENST00000428826.2:c.658A>G	p.Ile220Val	p.I220V	ENST00000428826		220	Att/Gtt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288979	212288979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	77	486	0	ENST00000342788.4:c.2767G>C	p.Gly923Arg	p.G923R	ENST00000342788	NM_005235.2	923	Gga/Cga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023963	31023963	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	209	534	0	ENST00000375687.4:c.3448G>T	p.Gly1150Ter	p.G1150*	ENST00000375687	NM_015338.5	1150	Gga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41568585	41568599	+	protein_altering_variant	In_Frame_Del	DEL	TTCTGGAAGAAAGCA	TTCTGGAAGAAAGCA	CTC			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	56	448	1	ENST00000263253.7:c.4535_4549delinsCTC	p.Val1512_Ile1517delinsAlaLeu	p.V1512_I1517delinsAL	ENST00000263253	NM_001429.3	1512	gTTCTGGAAGAAAGCAtt/gCTCtt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499412	89499412	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	67	385	0	ENST00000336596.2:c.2582G>A	p.Trp861Ter	p.W861*	ENST00000336596	NM_005233.5	861	tGg/tAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499420	89499420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	71	411	0	ENST00000336596.2:c.2590G>A	p.Asp864Asn	p.D864N	ENST00000336596	NM_005233.5	864	Gac/Aac																																																																														
ATR	545	MSKCC	GRCh37	3	142241641	142241641	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	24	448	0	ENST00000350721.4:c.4195G>T	p.Glu1399Ter	p.E1399*	ENST00000350721	NM_001184.3	1399	Gag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217175	66217175	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	94	387	0	ENST00000273854.3:c.2440T>G	p.Cys814Gly	p.C814G	ENST00000273854	NM_004439.5	814	Tgc/Ggc																																																																														
PIM1	5292	MSKCC	GRCh37	6	37138389	37138389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	112	392	0	ENST00000373509.5:c.38G>T	p.Arg13Leu	p.R13L	ENST00000373509	NM_002648.3	13	cGc/cTc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978652	70978652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	139	600	0	ENST00000276594.2:c.1001C>A	p.Pro334His	p.P334H	ENST00000276594	NM_024504.3	334	cCc/cAc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570247	87570247	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	72	330	0	ENST00000277120.3:c.1987G>T	p.Glu663Ter	p.E663*	ENST00000277120		663	Gaa/Taa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209628	98209628	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	84	470	0	ENST00000331920.6:c.3910A>T	p.Arg1304Trp	p.R1304W	ENST00000331920	NM_000264.3	1304	Agg/Tgg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248205	110248205	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	66	320	0	ENST00000374672.4:c.1267G>T	p.Glu423Ter	p.E423*	ENST00000374672	NM_004235.4	423	Gag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70357595	70357608	+	frameshift_variant	Frame_Shift_Del	DEL	CTCATGTGGGATTG	CTCATGTGGGATTG	-			P-0037322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	56	717	0	ENST00000374080.3:c.5847_5860del	p.His1950AlafsTer96	p.H1950Afs*96	ENST00000374080		1949	tCTCATGTGGGATTG/t																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0037336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	324	700	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	295	534	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35875645	35875645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201449880		P-0037336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	174	358	0	ENST00000303115.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000303115	NM_002185.3	278	Gat/Aat																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4101031	4101031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375843855		P-0037336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	230	496	0	ENST00000262948.5:c.691C>T	p.Arg231Cys	p.R231C	ENST00000262948	NM_030662.3	231	Cgc/Tgc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729162	66729162	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519732		P-0037336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	348	654	1	ENST00000307102.5:c.370C>T	p.Pro124Ser	p.P124S	ENST00000307102	NM_002755.3	124	Ccg/Tcg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	309	429	0				ENST00000310581	NM_198253.2																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153245450	153245450	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	244	635	1	ENST00000281708.4:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000281708	NM_033632.3	581	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	352	840	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221084	5221084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371881792		P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	63	653	2	ENST00000357368.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000357368	NM_002850.3	1128	Gtc/Atc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115443	115115443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	264	649	0	ENST00000257566.3:c.883G>A	p.Asp295Asn	p.D295N	ENST00000257566	NM_016569.3	295	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730919	40730919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	192	490	1	ENST00000373198.4:c.3616C>T	p.Pro1206Ser	p.P1206S	ENST00000373198	NM_133170.3	1206	Ccc/Tcc																																																																														
ALK	238	MSKCC	GRCh37	2	30142942	30142942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1442742511		P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	153	784	1	ENST00000389048.3:c.584C>T	p.Ala195Val	p.A195V	ENST00000389048	NM_004304.4	195	gCg/gTg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933824	36933824	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	111	538	0	ENST00000361632.4:c.1577-2A>T		p.X526_splice	ENST00000361632		526																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439800	18439800	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	196	350	0	ENST00000266497.5:c.698A>T	p.Gln233Leu	p.Q233L	ENST00000266497		233	cAg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433955	49433955	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	229	730	0	ENST00000301067.7:c.7598C>G	p.Pro2533Arg	p.P2533R	ENST00000301067	NM_003482.3	2533	cCc/cGc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118767	115118767	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768160499		P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	251	632	0	ENST00000257566.3:c.574G>A	p.Ala192Thr	p.A192T	ENST00000257566	NM_016569.3	192	Gct/Act																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118925	115118925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	77	309	0	ENST00000257566.3:c.416G>C	p.Arg139Thr	p.R139T	ENST00000257566	NM_016569.3	139	aGa/aCa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422071	81422071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	417	429	0	ENST00000298171.2:c.47C>A	p.Pro16His	p.P16H	ENST00000298171	NM_000369.2	16	cCc/cAc																																																																														
MGA	23269	MSKCC	GRCh37	15	41961517	41961517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	238	683	0	ENST00000219905.7:c.425G>T	p.Trp142Leu	p.W142L	ENST00000219905	NM_001164273.1	142	tGg/tTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245112	41245112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	405	823	0	ENST00000357654.3:c.2436G>T	p.Lys812Asn	p.K812N	ENST00000357654	NM_007294.3	812	aaG/aaT																																																																														
YES1	7525	MSKCC	GRCh37	18	745856	745945	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTGGGTGAAAAATAAATACTTTCACTATATCTTTCTCAAAATACTGCCCCAAGAAATTTTATACTTATACTAATATAACAATATTCAT	ACCTGGGTGAAAAATAAATACTTTCACTATATCTTTCTCAAAATACTGCCCCAAGAAATTTTATACTTATACTAATATAACAATATTCAT	-			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	76	525	0	ENST00000314574.4:c.574+3_576del		p.X192_splice	ENST00000314574	NM_005433.3	192																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11134261	11134262	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	338	566	1	ENST00000344626.4:c.2927_2928delinsCT	p.Leu976Ser	p.L976S	ENST00000344626	NM_003072.3	976	tTG/tCT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298045	15298045	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	487	909	1	ENST00000263388.2:c.1711G>T	p.Ala571Ser	p.A571S	ENST00000263388	NM_000435.2	571	Gct/Tct																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463508	25463509	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	78	466	2	ENST00000264709.3:c.2173_2173+1delinsTT		p.X725_splice	ENST00000264709	NM_175629.2	725																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25972641	25972641	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	224	482	0	ENST00000435504.4:c.1784A>T	p.Gln595Leu	p.Q595L	ENST00000435504		595	cAg/cTg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866303	42866303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	63	562	0	ENST00000398585.3:c.329C>T	p.Ser110Phe	p.S110F	ENST00000398585	NM_001135099.1	110	tCc/tTc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175889	24176325	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTACCCCTGGCCCTGTGGTCCTGGGCTCTGCCCACAGGCACCTGGCTTTCCAGGCAGAGGCAGGGCCATTGCCTTTCCCAGTCTCCCATGGTCTCTGAGACAGAGTACCTCTAGTGCTGCTAGAGGCAGGCAGGCTTCTGGGTGATAAGGCCCCATCCAAACGCCAGGGTATGTTTCCCTGCATGGAACAAACATAATTCCTCAGGCTGAGGGTCTGACCACAGCCCAGATCCAGGTTTTGGGGTCCCTGGAGTGATGAGCAGGGCCTGAGTGGCAGACAGGCGAGGCTGAGAGAAGGCTGGGTCTGACCCTGCTGGGGGCCCACATCCTGCCTCTGTTCCCACCCCTACACTTGGCTGCCCTGTAGAGCCTTGGGAAGGGCAGCGCCCAGGCTGGGAGCTGGCCCCGACTCATTGCCCTCCCCACTCCTCTTCC	AGGTACCCCTGGCCCTGTGGTCCTGGGCTCTGCCCACAGGCACCTGGCTTTCCAGGCAGAGGCAGGGCCATTGCCTTTCCCAGTCTCCCATGGTCTCTGAGACAGAGTACCTCTAGTGCTGCTAGAGGCAGGCAGGCTTCTGGGTGATAAGGCCCCATCCAAACGCCAGGGTATGTTTCCCTGCATGGAACAAACATAATTCCTCAGGCTGAGGGTCTGACCACAGCCCAGATCCAGGTTTTGGGGTCCCTGGAGTGATGAGCAGGGCCTGAGTGGCAGACAGGCGAGGCTGAGAGAAGGCTGGGTCTGACCCTGCTGGGGGCCCACATCCTGCCTCTGTTCCCACCCCTACACTTGGCTGCCCTGTAGAGCCTTGGGAAGGGCAGCGCCCAGGCTGGGAGCTGGCCCCGACTCATTGCCCTCCCCACTCCTCTTCC	-			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	126	388	0	ENST00000263121.7:c.1117_1119-3del		p.X373_splice	ENST00000263121	NM_003073.3	373																																																																															
EP300	2033	MSKCC	GRCh37	22	41521941	41521941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	272	579	0	ENST00000263253.7:c.803G>T	p.Ser268Ile	p.S268I	ENST00000263253	NM_001429.3	268	aGt/aTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670852	134670852	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	167	378	0	ENST00000398015.3:c.763T>A	p.Cys255Ser	p.C255S	ENST00000398015	NM_004441.4	255	Tgc/Agc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549739	187549739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	216	455	0	ENST00000441802.2:c.4502G>T	p.Ser1501Ile	p.S1501I	ENST00000441802	NM_005245.3	1501	aGt/aTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629371	187629371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	153	662	0	ENST00000441802.2:c.1611G>T	p.Arg537Ser	p.R537S	ENST00000441802	NM_005245.3	537	agG/agT																																																																														
APC	324	MSKCC	GRCh37	5	112170733	112170733	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs756090401		P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	366	601	0	ENST00000257430.4:c.1829A>G	p.Asp610Gly	p.D610G	ENST00000257430	NM_000038.5	610	gAt/gGt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149512494	149512494	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs41287112		P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	148	347	0	ENST00000261799.4:c.946G>T	p.Val316Leu	p.V316L	ENST00000261799	NM_002609.3	316	Gtg/Ttg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058749	180058749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	248	651	0	ENST00000261937.6:c.88C>A	p.Pro30Thr	p.P30T	ENST00000261937	NM_182925.4	30	Ccg/Acg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679980	30679980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	222	537	0	ENST00000376406.3:c.1739A>G	p.Asp580Gly	p.D580G	ENST00000376406	NM_014641.2	580	gAt/gGt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680438	30680438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	263	604	1	ENST00000376406.3:c.1281G>T	p.Trp427Cys	p.W427C	ENST00000376406	NM_014641.2	427	tgG/tgT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55231508	55231508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	139	479	0	ENST00000275493.2:c.1714A>G	p.Thr572Ala	p.T572A	ENST00000275493	NM_005228.3	572	Aca/Gca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248993	55248993	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	225	520	0	ENST00000275493.2:c.2291A>T	p.Tyr764Phe	p.Y764F	ENST00000275493	NM_005228.3	764	tAc/tTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81392150	81392150	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	196	363	0	ENST00000222390.5:c.127A>T	p.Lys43Ter	p.K43*	ENST00000222390	NM_000601.4	43	Aaa/Taa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372148	55372148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	381	596	0	ENST00000297316.4:c.838G>T	p.Gly280Cys	p.G280C	ENST00000297316	NM_022454.3	280	Ggt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942864	68942864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	509	569	0	ENST00000288368.4:c.676G>C	p.Glu226Gln	p.E226Q	ENST00000288368	NM_024870.2	226	Gaa/Caa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68989636	68989636	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	104	479	0	ENST00000288368.4:c.1574A>T	p.Asp525Val	p.D525V	ENST00000288368	NM_024870.2	525	gAt/gTt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949988	44949988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	121	201	0	ENST00000377967.4:c.3757G>T	p.Val1253Leu	p.V1253L	ENST00000377967	NM_021140.2	1253	Gtg/Ttg																																																																														
MED12	9968	MSKCC	GRCh37	X	70340819	70340819	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0037338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	181	214	0	ENST00000374080.3:c.554-2A>G		p.X185_splice	ENST00000374080		185																																																																															
MEN1	4221	MSKCC	GRCh37	11	64572161	64572161	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	206	682	1	ENST00000337652.1:c.1493del	p.Pro498ArgfsTer66	p.P498Rfs*66	ENST00000337652	NM_130803.2	498	cCg/cg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226066	53226066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	258	874	0	ENST00000375401.3:c.2783C>T	p.Ala928Val	p.A928V	ENST00000375401	NM_004187.3	928	gCg/gTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210482	5210482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs147647579		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	160	573	0	ENST00000357368.4:c.5485C>T	p.Arg1829Trp	p.R1829W	ENST00000357368	NM_002850.3	1829	Cgg/Tgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602754	10602754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	301	893	0	ENST00000171111.5:c.824C>T	p.Ser275Leu	p.S275L	ENST00000171111	NM_203500.1	275	tCg/tTg																																																																														
RET	5979	MSKCC	GRCh37	10	43609105	43609105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1228204486		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	113	746	0	ENST00000355710.3:c.1861G>A	p.Glu621Lys	p.E621K	ENST00000355710	NM_020975.4	621	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259043	16259043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	81	481	1	ENST00000375759.3:c.6313del	p.Ala2105LeufsTer33	p.A2105Lfs*33	ENST00000375759	NM_015001.2	2103	aGg/ag																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020751	37020751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	98	531	0	ENST00000358127.4:c.94C>T	p.Pro32Ser	p.P32S	ENST00000358127	NM_001280556.1	32	Cca/Tca																																																																														
XPO1	7514	MSKCC	GRCh37	2	61709534	61709534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	177	374	0	ENST00000401558.2:c.2953G>A	p.Ala985Thr	p.A985T	ENST00000401558	NM_003400.3	985	Gcc/Acc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651978	36651979	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	257	717	0	ENST00000244741.5:c.102_103del	p.Cys34Ter	p.C34*	ENST00000244741	NM_000389.4	34	TGt/t																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106093	8106093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	65	426	0	ENST00000346208.3:c.913C>T	p.Arg305Ter	p.R305*	ENST00000346208		305	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118391539	118391539	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782283493		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	165	394	1	ENST00000534358.1:c.11452C>T	p.Pro3818Ser	p.P3818S	ENST00000534358	NM_005933.3	3818	Cca/Tca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18649065	18649065	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	81	456	1	ENST00000266497.5:c.2744del	p.Asn915ThrfsTer24	p.N915Tfs*24	ENST00000266497		914	Aaa/aa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715638	18715638	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs752088371		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	54	281	0	ENST00000266497.5:c.3469A>G	p.Lys1157Glu	p.K1157E	ENST00000266497		1157	Aaa/Gaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246297	46246297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770601353		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	171	396	0	ENST00000334344.6:c.4391G>A	p.Arg1464His	p.R1464H	ENST00000334344	NM_152641.2	1464	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435914	110435914	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	95	726	1	ENST00000375856.3:c.2487del	p.Val830TrpfsTer36	p.V830Wfs*36	ENST00000375856	NM_003749.2	829	ccC/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830417	72830417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144401383		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	15	403	0	ENST00000268489.5:c.6164C>T	p.Pro2055Leu	p.P2055L	ENST00000268489	NM_006885.3	2055	cCg/cTg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484270	57484270	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	83	481	0	ENST00000371085.3:c.584A>G	p.Gln195Arg	p.Q195R	ENST00000371085	NM_000516.4	195	cAg/cGg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442498	52442498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	60	372	2	ENST00000460680.1:c.247G>A	p.Ala83Thr	p.A83T	ENST00000460680	NM_004656.3	83	Gcc/Acc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911522	134911522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778136807		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	175	528	0	ENST00000398015.3:c.1987C>T	p.Arg663Trp	p.R663W	ENST00000398015	NM_004441.4	663	Cgg/Tgg																																																																														
TET2	54790	MSKCC	GRCh37	4	106196846	106196846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	144	451	0	ENST00000380013.4:c.5179C>T	p.His1727Tyr	p.H1727Y	ENST00000380013	NM_001127208.2	1727	Cat/Tat																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449615	149449615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	73	651	0	ENST00000286301.3:c.1331C>A	p.Ala444Asp	p.A444D	ENST00000286301	NM_005211.3	444	gCc/gAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046674	180046674	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	87	846	0	ENST00000261937.6:c.2638del	p.Met880CysfsTer2	p.M880Cfs*2	ENST00000261937	NM_182925.4	880	Atg/tg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982050	93982050	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1232168679		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	101	539	0	ENST00000369303.4:c.1415T>C	p.Val472Ala	p.V472A	ENST00000369303	NM_004440.3	472	gTc/gCc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069936	5069938	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1216770146		P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	54	338	0	ENST00000381652.3:c.1527_1529del	p.Leu510del	p.L510del	ENST00000381652	NM_004972.3	509	CTT/-																																																																														
ATRX	546	MSKCC	GRCh37	X	76812920	76812920	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0037352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	97	699	0	ENST00000373344.5:c.6699+2T>C		p.X2233_splice	ENST00000373344	NM_000489.3	2233																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	29	351	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0037394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	40	449	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201959	102201960	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	15	166	1	ENST00000263464.3:c.1311_1312delinsAA	p.Glu438Lys	p.E438K	ENST00000263464	NM_001165.4	437	gaGGaa/gaAAaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434297	49434297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	47	664	0	ENST00000301067.7:c.7256C>T	p.Ser2419Phe	p.S2419F	ENST00000301067	NM_003482.3	2419	tCc/tTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532671	63532671	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0037394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	27	455	0	ENST00000307078.5:c.1908T>A	p.Ser636Arg	p.S636R	ENST00000307078	NM_004655.3	636	agT/agA																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584717	48584717	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	19	322	0	ENST00000342988.3:c.795del	p.Thr266ProfsTer70	p.T266Pfs*70	ENST00000342988	NM_005359.5	265	acT/ac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402742	139402742	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	39	594	1	ENST00000277541.6:c.3267G>A	p.Trp1089Ter	p.W1089*	ENST00000277541	NM_017617.3	1089	tgG/tgA																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220450	123220450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	23	235	0	ENST00000218089.9:c.3107A>C	p.Asp1036Ala	p.D1036A	ENST00000218089	NM_001042749.1	1036	gAt/gCt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0037413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	47	490	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782177		P-0037413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	37	637	0	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																																																														
XIAP	331	MSKCC	GRCh37	X	123020294	123020301	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGGCA	CCATGGCA	-			P-0037413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	31	511	0	ENST00000355640.3:c.782_789del	p.Ser261Ter	p.S261*	ENST00000355640		261	tCCATGGCA/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0037420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	88	707	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0037420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	50	698	4	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	56	355	0				ENST00000310581	NM_198253.2																																																																																
PALB2	79728	MSKCC	GRCh37	16	23637644	23637644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	56	593	0	ENST00000261584.4:c.2661C>G	p.Ile887Met	p.I887M	ENST00000261584	NM_024675.3	887	atC/atG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974693	21974694	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTA			P-0037420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	70	391	0	ENST00000304494.5:c.133_134insTAG	p.Tyr44_Gly45insVal	p.Y44_G45insV	ENST00000304494	NM_000077.4	45	ggt/gTAGgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974693	21974694	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTA			P-0037420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	70	391	0	ENST00000304494.5:c.133_134insTAG	p.Tyr44_Gly45insVal	p.Y44_G45insV	ENST00000304494	NM_000077.4	45	ggt/gTAGgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	117	289	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	73	296	0				ENST00000310581	NM_198253.2																																																																																
EZH1	2145	MSKCC	GRCh37	17	40858116	40858116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	165	652	0	ENST00000428826.2:c.1748C>G	p.Pro583Arg	p.P583R	ENST00000428826		583	cCt/cGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	51	286	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	238	663	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	203	514	1	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125513776	125513776	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	53	538	0	ENST00000428830.2:c.904C>G	p.Pro302Ala	p.P302A	ENST00000428830	NM_001114121.2	302	Cca/Gca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249028	55249028	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1275022697		P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	156	473	0	ENST00000275493.2:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000275493	NM_005228.3	776	Cgc/Tgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464501	25464501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	155	570	2	ENST00000264709.3:c.2012C>T	p.Thr671Met	p.T671M	ENST00000264709	NM_175629.2	671	aCg/aTg																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588868	69588868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	49	573	3	ENST00000168712.1:c.368G>A	p.Arg123Gln	p.R123Q	ENST00000168712	NM_002007.2	123	cGg/cAg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117383	115117383	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1418098778		P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	126	404	0	ENST00000257566.3:c.791C>T	p.Pro264Leu	p.P264L	ENST00000257566	NM_016569.3	264	cCt/cTt																																																																														
RB1	5925	MSKCC	GRCh37	13	48878176	48878196	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTCGTCAGGTGAGCGAGCA	CTCTCGTCAGGTGAGCGAGCA	TGT			P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	13	90	1	ENST00000267163.4:c.128_137+11delinsTGT		p.X43_splice	ENST00000267163	NM_000321.2	43																																																																															
TSC2	7249	MSKCC	GRCh37	16	2133810	2133810	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs878854099		P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	65	442	0	ENST00000219476.3:c.3998A>G	p.Tyr1333Cys	p.Y1333C	ENST00000219476	NM_000548.3	1333	tAc/tGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55270220	55270220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	268	629	2	ENST00000275493.2:c.3173G>T	p.Cys1058Phe	p.C1058F	ENST00000275493	NM_005228.3	1058	tGt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	231	549	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	119	223	0				ENST00000310581	NM_198253.2																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11141515	11141515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	263	597	0	ENST00000344626.4:c.3492C>A	p.Asn1164Lys	p.N1164K	ENST00000344626	NM_003072.3	1164	aaC/aaA																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	538	515	2	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52719914	52719914	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1247831715		P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	103	488	0	ENST00000322088.6:c.1126G>A	p.Glu376Lys	p.E376K	ENST00000322088	NM_014225.5	376	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417337	139417337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs537766290		P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	62	538	1	ENST00000277541.6:c.707C>T	p.Thr236Met	p.T236M	ENST00000277541	NM_017617.3	236	aCg/aTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	148	407	0	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738518	145738518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368611522		P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	247	527	0	ENST00000428558.2:c.2467G>A	p.Glu823Lys	p.E823K	ENST00000428558	NM_004260.3	823	Gaa/Aaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200023	123200023	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	115	134	0	ENST00000218089.9:c.2097-2A>G		p.X699_splice	ENST00000218089	NM_001042749.1	699																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328382	137328382	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	278	755	0	ENST00000481739.1:c.1311C>G	p.Phe437Leu	p.F437L	ENST00000481739	NM_002957.4	437	ttC/ttG																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741517	17741517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	188	402	0	ENST00000250003.3:c.188C>T	p.Ser63Leu	p.S63L	ENST00000250003	NM_002478.4	63	tCg/tTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89845239	89845239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	79	415	0	ENST00000389301.3:c.1796C>G	p.Ser599Cys	p.S599C	ENST00000389301	NM_000135.2	599	tCc/tGc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89845385	89845385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	91	493	1	ENST00000389301.3:c.1742C>T	p.Ser581Phe	p.S581F	ENST00000389301	NM_000135.2	581	tCc/tTc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143033717	143033717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	149	384	0	ENST00000262992.4:c.2254G>A	p.Glu752Lys	p.E752K	ENST00000262992	NM_001101669.1	752	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44870204	44870210	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGAATGC	AGAATGC	GA			P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	192	259	1	ENST00000377967.4:c.385-2_389delinsGA		p.X129_splice	ENST00000377967	NM_021140.2	129																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44870210	44870210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	192	258	0	ENST00000377967.4:c.389C>A	p.Ala130Asp	p.A130D	ENST00000377967	NM_021140.2	130	gCt/gAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0037518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	59	363	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593621	55593662	+	inframe_deletion	In_Frame_Del	DEL	ATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTT	ATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTT	-			P-0037522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	159	415	0	ENST00000288135.5:c.1687_1728del	p.Ile563_Leu576del	p.I563_L576del	ENST00000288135	NM_000222.2	563	ATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTT/-																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	47	556	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435798	110435798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1240854451		P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	90	345	1	ENST00000375856.3:c.2603C>T	p.Ser868Leu	p.S868L	ENST00000375856	NM_003749.2	868	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	202	492	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367257	50367257	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1245618829		P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	66	344	2	ENST00000331340.3:c.64G>A	p.Asp22Asn	p.D22N	ENST00000331340	NM_006060.4	22	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992720	68992720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182978151		P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	220	573	1	ENST00000288368.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000288368	NM_024870.2	562	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577057	7577058	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	427	679	1	ENST00000269305.4:c.880dup	p.Glu294GlyfsTer12	p.E294Gfs*12	ENST00000269305	NM_001126112.2	294	gag/gGag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15984012	15984012	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	33	414	0	ENST00000268712.3:c.3207T>G	p.His1069Gln	p.H1069Q	ENST00000268712	NM_006311.3	1069	caT/caG																																																																														
APC	324	MSKCC	GRCh37	5	112175217	112175217	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	183	240	0	ENST00000257430.4:c.3929del	p.Lys1310ArgfsTer11	p.K1310Rfs*11	ENST00000257430	NM_000038.5	1309	gAa/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0037549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	46	508	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
CASP8	841	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1272714323		P-0037549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	108	676	0	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																																																														
DICER1	23405	MSKCC	GRCh37	14	95598872	95598872	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770567567		P-0037549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	104	437	0	ENST00000343455.3:c.287C>T	p.Thr96Met	p.T96M	ENST00000343455	NM_177438.2	96	aCg/aTg																																																																														
SDHC	6391	MSKCC	GRCh37	1	161310413	161310413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	530	571	1	ENST00000367975.2:c.209G>A	p.Cys70Tyr	p.C70Y	ENST00000367975	NM_003001.3	70	tGc/tAc																																																																														
RET	5979	MSKCC	GRCh37	10	43622086	43622086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	76	558	0	ENST00000355710.3:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000355710	NM_020975.4	1035	Gag/Aag																																																																														
CBL	867	MSKCC	GRCh37	11	119148904	119148904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	137	432	0	ENST00000264033.4:c.1124G>T	p.Gly375Val	p.G375V	ENST00000264033	NM_005188.3	375	gGc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445359	49445359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1363389206		P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	248	841	0	ENST00000301067.7:c.2107G>A	p.Glu703Lys	p.E703K	ENST00000301067	NM_003482.3	703	Gag/Aag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121437424	121437424	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	121	586	0	ENST00000257555.6:c.1762C>G	p.Pro588Ala	p.P588A	ENST00000257555		588	Ccc/Gcc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133821	41133821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	412	489	1	ENST00000379561.5:c.1807G>A	p.Asp603Asn	p.D603N	ENST00000379561	NM_002015.3	603	Gat/Aat																																																																														
DIS3	22894	MSKCC	GRCh37	13	73334666	73334666	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	283	444	0	ENST00000377767.4:c.2793+1G>T		p.X931_splice	ENST00000377767	NM_014953.3	931																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821988	72821989	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs752028320		P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	44	422	0	ENST00000268489.5:c.10184_10186dup	p.Gln3395dup	p.Q3395dup	ENST00000268489	NM_006885.3	3395	ccc/cAGCcc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81891919	81891919	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	163	673	0	ENST00000359376.3:c.389A>T	p.His130Leu	p.H130L	ENST00000359376	NM_002661.3	130	cAc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	588	713	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																														
RARA	5914	MSKCC	GRCh37	17	38511593	38511593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	221	627	1	ENST00000254066.5:c.1091G>T	p.Arg364Leu	p.R364L	ENST00000254066	NM_000964.3	364	cGg/cTg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369415	40369415	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	129	841	0	ENST00000293328.3:c.1237A>T	p.Ser413Cys	p.S413C	ENST00000293328	NM_012448.3	413	Agt/Tgt																																																																														
CIC	23152	MSKCC	GRCh37	19	42790944	42790944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	582	678	0	ENST00000575354.2:c.89G>T	p.Arg30Leu	p.R30L	ENST00000575354	NM_015125.3	30	cGc/cTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967276	134967276	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	313	633	0	ENST00000398015.3:c.2615C>G	p.Ala872Gly	p.A872G	ENST00000398015	NM_004441.4	872	gCg/gGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1255449	1255449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	80	746	0	ENST00000310581.5:c.3110C>T	p.Ser1037Phe	p.S1037F	ENST00000310581	NM_198253.2	1037	tCt/tTt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547265	106547277	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGGGAGCAAA	CCCCGGGAGCAAA	-			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	133	469	0	ENST00000369096.4:c.502_514del	p.Pro168ThrfsTer9	p.P168Tfs*9	ENST00000369096	NM_001198.3	168	CCCCGGGAGCAAAac/ac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518067	8518067	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	246	615	0	ENST00000356435.5:c.1324G>T	p.Glu442Ter	p.E442*	ENST00000356435		442	Gaa/Taa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98241428	98241428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	289	453	0	ENST00000331920.6:c.1069G>C	p.Ala357Pro	p.A357P	ENST00000331920	NM_000264.3	357	Gcc/Ccc																																																																														
ATRX	546	MSKCC	GRCh37	X	76856028	76856028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	111	313	0	ENST00000373344.5:c.5572G>T	p.Gly1858Cys	p.G1858C	ENST00000373344	NM_000489.3	1858	Ggc/Tgc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176015419	176015419	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037556-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	174	588	0	ENST00000367669.3:c.1319G>T	p.Gly440Val	p.G440V	ENST00000367669	NM_022457.5	440	gGa/gTa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573830	64573830	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037556-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	176	603	0	ENST00000337652.1:c.938C>G	p.Ser313Ter	p.S313*	ENST00000337652	NM_130803.2	313	tCa/tGa																																																																														
STK11	6794	MSKCC	GRCh37	19	1220451	1220453	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0037556-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	236	751	0	ENST00000326873.7:c.549_551del	p.Leu184del	p.L184del	ENST00000326873	NM_000455.4	182	CTG/-																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600531	10600531	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0037556-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			156	144	526	0	ENST00000171111.5:c.1326-2A>T		p.X442_splice	ENST00000171111	NM_203500.1	442																																																																															
SDHA	6389	MSKCC	GRCh37	5	233660	233660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037556-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			113	58	191	0	ENST00000264932.6:c.964C>G	p.Gln322Glu	p.Q322E	ENST00000264932	NM_004168.2	322	Caa/Gaa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32820905	32820905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037556-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			493	289	838	0	ENST00000354258.4:c.689G>A	p.Gly230Glu	p.G230E	ENST00000354258	NM_000593.5	230	gGa/gAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140487374	140487374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037556-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	228	642	0	ENST00000288602.6:c.1151G>C	p.Arg384Thr	p.R384T	ENST00000288602	NM_004333.4	384	aGa/aCa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317479	1317479	+	downstream_gene_variant	3'Flank	SNP	G	G	T			P-0037556-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	224	783	0				ENST00000381566																																																																																	
PBRM1	55193	MSKCC	GRCh37	3	52663027	52663028	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TATTCTTGATTCTTCAGTT			P-0037557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	92	439	0	ENST00000394830.3:c.1307_1325dup	p.Tyr442Ter	p.Y442*	ENST00000394830	NM_018313.4	442	tat/taAACTGAAGAATCAAGAATAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579487	7579487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	361	624	1	ENST00000269305.4:c.200del	p.Pro67GlnfsTer56	p.P67Qfs*56	ENST00000269305	NM_001126112.2	67	cCa/ca																																																																														
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	238	506	0	ENST00000326873.7:c.465-1G>C		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29207771	29207771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	381	584	0	ENST00000240100.2:c.25G>A	p.Glu9Lys	p.E9K	ENST00000240100	NM_001394.6	9	Gag/Aag																																																																														
PARP1	142	MSKCC	GRCh37	1	226574132	226574133	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	129	431	2	ENST00000366794.5:c.728_729delinsTT	p.Asp243Val	p.D243V	ENST00000366794	NM_001618.3	243	gAC/gTT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434911	49434912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGCCCAGCATCGGGGGCT			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	45	439	0	ENST00000301067.7:c.6623_6641dup	p.Ser2215AlafsTer34	p.S2215Afs*34	ENST00000301067	NM_003482.3	2214	gcc/gcAGCCCCCGATGCTGGGCGCc																																																																														
POLE	5426	MSKCC	GRCh37	12	133236026	133236026	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	184	445	0	ENST00000320574.5:c.3130G>T	p.Glu1044Ter	p.E1044*	ENST00000320574	NM_006231.2	1044	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992753	72992753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	103	470	0	ENST00000268489.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000268489	NM_006885.3	431	tCa/tTa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170519	11170519	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	277	526	1	ENST00000344626.4:c.4726G>T	p.Glu1576Ter	p.E1576*	ENST00000344626	NM_003072.3	1576	Gag/Tag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912480	50912480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	242	596	0	ENST00000440232.2:c.1994G>T	p.Ser665Ile	p.S665I	ENST00000440232	NM_002691.3	665	aGt/aTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213798	66213798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	93	325	0	ENST00000273854.3:c.2632C>A	p.Pro878Thr	p.P878T	ENST00000273854	NM_004439.5	878	Ccc/Acc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523544	106523544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	77	170	0	ENST00000359195.3:c.2696C>A	p.Thr899Lys	p.T899K	ENST00000359195	NM_002649.2	899	aCg/aAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499828	8499828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	141	358	0	ENST00000356435.5:c.2141C>A	p.Pro714His	p.P714H	ENST00000356435		714	cCt/cAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974805	21974818	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTCCCCGCCGCC	TGCTCCCCGCCGCC	GCTCGCG			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	114	123	1	ENST00000304494.5:c.9_22delinsCGCGAGC	p.Ala5SerfsTer19	p.A5Sfs*19	ENST00000304494	NM_000077.4	3	ccGGCGGCGGGGAGCAgc/ccCGCGAGCgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974805	21974818	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTCCCCGCCGCC	TGCTCCCCGCCGCC	GCTCGCG			P-0037575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	114	123	1	ENST00000304494.5:c.9_22delinsCGCGAGC	p.Ala5SerfsTer19	p.A5Sfs*19	ENST00000304494	NM_000077.4	3	ccGGCGGCGGGGAGCAgc/ccCGCGAGCgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	126	534	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0037600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	12	669	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0037600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	150	575	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0037639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	253	769	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43720317	43720317	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1449770187		P-0037639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	223	602	0	ENST00000382044.4:c.3725A>G	p.His1242Arg	p.H1242R	ENST00000382044	NM_001141980.1	1242	cAt/cGt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682382	52682383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0037639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	45	237	0	ENST00000394830.3:c.790_791insGG	p.Glu264GlyfsTer20	p.E264Gfs*20	ENST00000394830	NM_018313.4	264	gag/gGGag																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0037672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	8	305	0	ENST00000288135.5:c.1669_1674del	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135776975	135776975	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	23	344	0	ENST00000298552.3:c.2502+1G>A		p.X834_splice	ENST00000298552	NM_001162426.1	834																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	129	523	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577579	7577579	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	98	461	0	ENST00000269305.4:c.702C>A	p.Tyr234Ter	p.Y234*	ENST00000269305	NM_001126112.2	234	taC/taA																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257797	16257797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	25	331	0	ENST00000375759.3:c.5062G>A	p.Glu1688Lys	p.E1688K	ENST00000375759	NM_015001.2	1688	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257803	16257803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	26	321	0	ENST00000375759.3:c.5068G>A	p.Ala1690Thr	p.A1690T	ENST00000375759	NM_015001.2	1690	Gct/Act																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068981	30068981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	34	385	0	ENST00000331968.5:c.1948G>C	p.Glu650Gln	p.E650Q	ENST00000331968	NM_002742.2	650	Gag/Cag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661792	227661792	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	129	580	0	ENST00000305123.5:c.1663A>G	p.Met555Val	p.M555V	ENST00000305123	NM_005544.2	555	Atg/Gtg																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62325780	62325781	+	missense_variant,NMD_transcript_variant	Missense_Mutation	DNP	GG	GG	TT			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	107	419	1	ENST00000482936.1:c.3048_3049delinsTT	p.Asp1017Tyr	p.D1017Y	ENST00000482936		1016	ctGGac/ctTTac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801128	1801128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1333699127		P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	195	715	2	ENST00000260795.2:c.257G>A	p.Arg86His	p.R86H	ENST00000260795		86	cGt/cAt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163576	32163576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	63	312	0	ENST00000375023.3:c.5650G>T	p.Val1884Leu	p.V1884L	ENST00000375023	NM_004557.3	1884	Gta/Tta																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38139065	38139065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	847	480	1	ENST00000317025.8:c.3538G>A	p.Asp1180Asn	p.D1180N	ENST00000317025	NM_023034.1	1180	Gat/Aat																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38139086	38139086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	690	421	0	ENST00000317025.8:c.3517G>A	p.Glu1173Lys	p.E1173K	ENST00000317025	NM_023034.1	1173	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	289	439	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108204681	108204681	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs745775382		P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	94	181	0	ENST00000278616.4:c.7996A>G	p.Thr2666Ala	p.T2666A	ENST00000278616	NM_000051.3	2666	Act/Gct																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659952	227659952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	50	695	0	ENST00000305123.5:c.3503G>T	p.Gly1168Val	p.G1168V	ENST00000305123	NM_005544.2	1168	gGg/gTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11168338	11168338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	69	368	0	ENST00000361445.4:c.7534G>T	p.Asp2512Tyr	p.D2512Y	ENST00000361445	NM_004958.3	2512	Gac/Tac																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156837895	156837895	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	215	674	0	ENST00000524377.1:c.429-1G>T		p.X143_splice	ENST00000524377	NM_002529.3	143																																																																															
WT1	7490	MSKCC	GRCh37	11	32417937	32417937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	119	575	0	ENST00000332351.3:c.1115C>A	p.Pro372His	p.P372H	ENST00000332351	NM_024426.4	372	cCt/cAt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562368	95562368	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs368343829		P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	44	438	0	ENST00000343455.3:c.4889G>T	p.Arg1630Leu	p.R1630L	ENST00000343455	NM_177438.2	1630	cGc/cTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361138	66361138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	61	370	0	ENST00000273854.3:c.1034G>T	p.Arg345Ile	p.R345I	ENST00000273854	NM_004439.5	345	aGa/aTa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20487005	20487005	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs951556755		P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	131	375	0	ENST00000346618.3:c.970A>G	p.Thr324Ala	p.T324A	ENST00000346618	NM_001949.4	324	Aca/Gca																																																																														
SYK	6850	MSKCC	GRCh37	9	93650029	93650029	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0037771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	52	434	0	ENST00000375746.1:c.1582-2A>T		p.X528_splice	ENST00000375746	NM_001174167.1	528																																																																															
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	44	667	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0037774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	21	432	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602580	10602580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	60	737	2	ENST00000171111.5:c.998G>A	p.Gly333Asp	p.G333D	ENST00000171111	NM_203500.1	333	gGc/gAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11118700	11118700	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0037774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	39	613	0	ENST00000344626.4:c.2123+1G>C		p.X708_splice	ENST00000344626	NM_003072.3	708																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662721	227662721	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	48	767	1	ENST00000305123.5:c.734T>A	p.Val245Glu	p.V245E	ENST00000305123	NM_005544.2	245	gTg/gAg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675578	86675578	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	26	326	0	ENST00000274376.6:c.2514T>A	p.Asn838Lys	p.N838K	ENST00000274376	NM_002890.2	838	aaT/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0037901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	9	519	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865500	57865500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	209	553	1	ENST00000228682.2:c.2977C>T	p.Pro993Ser	p.P993S	ENST00000228682	NM_005269.2	993	Ccc/Tcc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519183	103519183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	101	255	0	ENST00000355739.4:c.2521C>G	p.His841Asp	p.H841D	ENST00000355739	NM_000123.3	841	Cac/Gac																																																																														
SOS1	6654	MSKCC	GRCh37	2	39233566	39233566	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	100	271	0	ENST00000402219.2:c.2778T>G	p.Cys926Trp	p.C926W	ENST00000402219	NM_005633.3	926	tgT/tgG																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22161984	22161984	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	123	356	0	ENST00000215832.6:c.271C>T	p.Arg91Ter	p.R91*	ENST00000215832	NM_002745.4	91	Cga/Tga																																																																														
FANCC	2176	MSKCC	GRCh37	9	97863997	97863997	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	109	382	0	ENST00000289081.3:c.1669C>T	p.Gln557Ter	p.Q557*	ENST00000289081	NM_000136.2	557	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	173	631	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	134	539	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793287	242793287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	189	746	1	ENST00000334409.5:c.790C>A	p.Arg264Ser	p.R264S	ENST00000334409	NM_005018.2	264	Cgc/Agc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056330	26056330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	110	405	1	ENST00000343677.2:c.327G>C	p.Lys109Asn	p.K109N	ENST00000343677	NM_005319.3	109	aaG/aaC																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554893	187554893	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	252	429	0	ENST00000441802.2:c.4268C>G	p.Ser1423Ter	p.S1423*	ENST00000441802	NM_005245.3	1423	tCa/tGa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435173	18435173	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	79	366	0	ENST00000266497.5:c.158A>T	p.His53Leu	p.H53L	ENST00000266497		53	cAc/cTc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760803	59760803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	116	497	0	ENST00000259008.2:c.3604G>A	p.Glu1202Lys	p.E1202K	ENST00000259008	NM_032043.2	1202	Gaa/Aaa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732948	30732948	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	90	314	0	ENST00000359013.4:c.1636T>C	p.Trp546Arg	p.W546R	ENST00000359013	NM_001024847.2	546	Tgg/Cgg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902808	1902809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	131	583	0	ENST00000382895.3:c.430dup	p.Cys144LeufsTer3	p.C144Lfs*3	ENST00000382895	NM_133330.2	143	att/aTtt																																																																														
KIT	3815	MSKCC	GRCh37	4	55604632	55604632	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	261	564	0	ENST00000288135.5:c.2840A>T	p.Gln947Leu	p.Q947L	ENST00000288135	NM_000222.2	947	cAg/cTg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177403	56177403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	78	340	0	ENST00000399503.3:c.2376G>T	p.Lys792Asn	p.K792N	ENST00000399503	NM_005921.1	792	aaG/aaT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123234427	123234428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	84	355	0	ENST00000218089.9:c.3789dup	p.Gly1264TrpfsTer12	p.G1264Wfs*12	ENST00000218089	NM_001042749.1	1263	ctt/cTtt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0038021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	85	286	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0038021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	270	546	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249029	55249029	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs483352806		P-0038021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	285	531	0	ENST00000275493.2:c.2327G>A	p.Arg776His	p.R776H	ENST00000275493	NM_005228.3	776	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711971	89711971	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	74	306	0	ENST00000371953.3:c.589A>T	p.Lys197Ter	p.K197*	ENST00000371953	NM_000314.4	197	Aag/Tag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514692	103514692	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	115	335	0	ENST00000355739.4:c.1193A>G	p.Asp398Gly	p.D398G	ENST00000355739	NM_000123.3	398	gAc/gGc																																																																														
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0038022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	108	554	0	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
FLT3	2322	MSKCC	GRCh37	13	28622515	28622515	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	63	314	0	ENST00000241453.7:c.1102T>C	p.Cys368Arg	p.C368R	ENST00000241453	NM_004119.2	368	Tgt/Cgt																																																																														
LYN	4067	MSKCC	GRCh37	8	56911020	56911020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	93	439	0	ENST00000519728.1:c.1166C>T	p.Ala389Val	p.A389V	ENST00000519728	NM_002350.3	389	gCt/gTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426267	49426268	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			758	405	871	1	ENST00000301067.7:c.12220_12221del	p.Gln4074ThrfsTer32	p.Q4074Tfs*32	ENST00000301067	NM_003482.3	4074	CAa/a																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427018	49427043	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGGCCCTGGGGGCCCAAAGCTCCA	GAGGGCCCTGGGGGCCCAAAGCTCCA	-			P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			723	160	699	0	ENST00000301067.7:c.11445_11470del	p.Gly3816GlnfsTer187	p.G3816Qfs*187	ENST00000301067	NM_003482.3	3815	ccTGGAGCTTTGGGCCCCCAGGGCCCTCac/ccac																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569895	95569895	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			503	120	461	0	ENST00000343455.3:c.3838A>T	p.Ser1280Cys	p.S1280C	ENST00000343455	NM_177438.2	1280	Agc/Tgc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647314	23647314	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			632	183	613	0	ENST00000261584.4:c.553A>T	p.Lys185Ter	p.K185*	ENST00000261584	NM_024675.3	185	Aaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			390	432	655	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856347	45856347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			902	244	730	1	ENST00000391945.4:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000391945	NM_000400.3	609	Gac/Aac																																																																														
INHA	3623	MSKCC	GRCh37	2	220439782	220439782	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148567617		P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			840	185	775	0	ENST00000243786.2:c.635C>T	p.Thr212Met	p.T212M	ENST00000243786	NM_002191.3	212	aCg/aTg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225379354	225379354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			391	366	618	0	ENST00000264414.4:c.514G>C	p.Glu172Gln	p.E172Q	ENST00000264414	NM_003590.4	172	Gag/Cag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89176407	89176407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			365	79	312	0	ENST00000336596.2:c.137C>T	p.Ser46Phe	p.S46F	ENST00000336596	NM_005233.5	46	tCt/tTt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			390	33	317	0	ENST00000274335.5:c.1392_1403del	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCGGGTGAGAGTGGCG	GGGTCGGGTGAGAGTGGCG	-	rs730881674		P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			420	122	530	0	ENST00000304494.5:c.225_243del	p.Ala76CysfsTer64	p.A76Cfs*64	ENST00000304494	NM_000077.4	75	ccCGCCACTCTCACCCGACCC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCGGGTGAGAGTGGCG	GGGTCGGGTGAGAGTGGCG	-	rs730881674		P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			420	122	530	0	ENST00000304494.5:c.225_243del	p.Ala76CysfsTer64	p.A76Cfs*64	ENST00000304494	NM_000077.4	75	ccCGCCACTCTCACCCGACCC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCGGGTGAGAGTGGCG	GGGTCGGGTGAGAGTGGCG	-	rs730881674		P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			420	122	530	0	ENST00000304494.5:c.225_243del	p.Ala76CysfsTer64	p.A76Cfs*64	ENST00000304494	NM_000077.4	75	ccCGCCACTCTCACCCGACCC/cc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98248121	98248121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780705		P-0038398-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			702	354	515	1	ENST00000331920.6:c.430C>T	p.Arg144Cys	p.R144C	ENST00000331920	NM_000264.3	144	Cgc/Tgc																																																																														
RET	5979	MSKCC	GRCh37	10	43623686	43623686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532862288		P-0038961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	120	406	1	ENST00000355710.3:c.3314C>T	p.Ala1105Val	p.A1105V	ENST00000355710	NM_020975.4	1105	gCg/gTg																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39311705	39311705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	79	676	0	ENST00000373001.3:c.954C>G	p.Ile318Met	p.I318M	ENST00000373001	NM_022157.3	318	atC/atG																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432854	432854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	96	429	0	ENST00000399788.2:c.2062C>A	p.Leu688Ile	p.L688I	ENST00000399788	NM_001042603.1	688	Ctc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579365	7579388	+	inframe_deletion	In_Frame_Del	DEL	CGTAGCTGCCCTGGTAGGTTTTCT	CGTAGCTGCCCTGGTAGGTTTTCT	-			P-0038961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	148	745	0	ENST00000269305.4:c.299_322del	p.Gln100_Gly108delinsArg	p.Q100_G108delinsR	ENST00000269305	NM_001126112.2	100	cAGAAAACCTACCAGGGCAGCTACGgt/cgt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808958	1808958	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	182	557	0	ENST00000260795.2:c.2393del	p.Pro798HisfsTer22	p.P798Hfs*22	ENST00000260795		797	gCc/gc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217315	11217335	+	inframe_deletion	In_Frame_Del	DEL	CGTGCAGTTTCTCATACCAGG	CGTGCAGTTTCTCATACCAGG	-			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	67	592	0	ENST00000361445.4:c.4343_4363del	p.Thr1448_Glu1455delinsLys	p.T1448_E1455delinsK	ENST00000361445	NM_004958.3	1448	aCCTGGTATGAGAAACTGCACGag/aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	118	296	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435979	49435979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	143	701	0	ENST00000301067.7:c.6002G>A	p.Arg2001Gln	p.R2001Q	ENST00000301067	NM_003482.3	2001	cGg/cAg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549263	21549263	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780614508		P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	91	761	2	ENST00000382592.4:c.3013G>A	p.Val1005Ile	p.V1005I	ENST00000382592	NM_014572.2	1005	Gta/Ata																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046611	30046611	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556530827		P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	84	437	0	ENST00000331968.5:c.2572C>T	p.Arg858Cys	p.R858C	ENST00000331968	NM_002742.2	858	Cgc/Tgc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223765		P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	47	546	1	ENST00000327367.4:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000327367	NM_005902.3	93	cGa/cAa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473635	67473635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906853		P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	129	561	0	ENST00000327367.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000327367	NM_005902.3	239	Gag/Aag																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	32	204	0	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519757		P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	31	167	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	45	217	0	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	55	245	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150382	157150382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	81	415	0	ENST00000346085.5:c.1564G>C	p.Val522Leu	p.V522L	ENST00000346085	NM_020732.3	522	Gtg/Ctg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37002734	37002734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	112	534	0	ENST00000358127.4:c.515C>T	p.Thr172Met	p.T172M	ENST00000358127	NM_001280556.1	172	aCg/aTg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651195	206651195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	168	712	1	ENST00000367120.3:c.805C>A	p.Leu269Met	p.L269M	ENST00000367120	NM_014002.3	269	Ctg/Atg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100427	8100427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	156	778	0	ENST00000346208.3:c.401C>A	p.Pro134His	p.P134H	ENST00000346208		134	cCc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	140	418	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220505	1220505	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs886039554		P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	426	778	1	ENST00000326873.7:c.597+1G>T		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015690	27015690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	169	537	1	ENST00000335756.4:c.277G>T	p.Ala93Ser	p.A93S	ENST00000335756	NM_001809.3	93	Gcc/Tcc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47601037	47601037	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	195	570	1	ENST00000263735.4:c.275A>T	p.Asp92Val	p.D92V	ENST00000263735	NM_002354.2	92	gAt/gTt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98242695	98242695	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773704443		P-0039078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	123	432	2	ENST00000331920.6:c.922G>A	p.Ala308Thr	p.A308T	ENST00000331920	NM_000264.3	308	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	47	292	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	44	519	0	ENST00000269305.4:c.823T>G	p.Cys275Gly	p.C275G	ENST00000269305	NM_001126112.2	275	Tgt/Ggt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101353	27101354	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTT			P-0039237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	62	556	0	ENST00000324856.7:c.4638_4641dup	p.His1548PhefsTer25	p.H1548Ffs*25	ENST00000324856	NM_006015.4	1545	-/CCTT																																																																														
INSR	3643	MSKCC	GRCh37	19	7117194	7117194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	76	589	1	ENST00000302850.5:c.4022G>T	p.Gly1341Val	p.G1341V	ENST00000302850	NM_000208.2	1341	gGg/gTg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152382202	152382202	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	40	358	0	ENST00000206249.3:c.1312A>T	p.Met438Leu	p.M438L	ENST00000206249	NM_000125.3	438	Atg/Ttg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141568617	141568617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	106	488	0	ENST00000220592.5:c.845G>T	p.Cys282Phe	p.C282F	ENST00000220592	NM_012154.3	282	tGc/tTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562577	176562577	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039361-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	75	411	0	ENST00000439151.2:c.473G>C	p.Cys158Ser	p.C158S	ENST00000439151	NM_022455.4	158	tGt/tCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0039396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	981	711	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
CDC42	998	MSKCC	GRCh37	1	22412950	22412950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	58	137	0	ENST00000344548.3:c.197G>C	p.Arg66Thr	p.R66T	ENST00000344548	NM_001039802.1	66	aGa/aCa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602918	10602918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	491	750	0	ENST00000171111.5:c.660C>G	p.Phe220Leu	p.F220L	ENST00000171111	NM_203500.1	220	ttC/ttG																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663013	227663013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	620	602	0	ENST00000305123.5:c.442G>C	p.Asp148His	p.D148H	ENST00000305123	NM_005544.2	148	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0039450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	507	676	8	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
RB1	5925	MSKCC	GRCh37	13	48951137	48951153	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGGGACAGGGTTGTG	TGTGGGACAGGGTTGTG	AAA			P-0039450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	52	378	1	ENST00000267163.4:c.1299_1315delinsAAA	p.Val434AsnfsTer24	p.V434Nfs*24	ENST00000267163	NM_000321.2	433	gcTGTGGGACAGGGTTGTGtc/gcAAAtc																																																																														
STK19	8859	MSKCC	GRCh37	6	31940277	31940277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	742	768	7	ENST00000375331.2:c.419G>T	p.Arg140Leu	p.R140L	ENST00000375331	NM_004197.1	140	cGg/cTg																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137524695	137524695	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs374675376		P-0039450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	252	476	4	ENST00000367739.4:c.674G>T	p.Gly225Val	p.G225V	ENST00000367739	NM_000416.2	225	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	111	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	46	360	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1019340046		P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			856	64	625	1	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044550	47044550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	138	354	0	ENST00000329236.7:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000329236	NM_001204466.1	605	Gag/Tag																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873657	35873678	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCCGAGCCGCGCGGCACCT	GGCTCCGAGCCGCGCGGCACCT	-			P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	98	345	0	ENST00000216797.5:c.173_194del	p.Glu58AlafsTer25	p.E58Afs*25	ENST00000216797	NM_020529.2	58	gAGGTGCCGCGCGGCTCGGAGCCc/gc																																																																														
BCL2	596	MSKCC	GRCh37	18	60795967	60795967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			710	100	513	0	ENST00000333681.4:c.611C>A	p.Pro204His	p.P204H	ENST00000333681		204	cCc/cAc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248541	212248541	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			880	102	543	0	ENST00000342788.4:c.3726C>G	p.Tyr1242Ter	p.Y1242*	ENST00000342788	NM_005235.2	1242	taC/taG																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53250049	53250049	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	139	340	0	ENST00000375401.3:c.200C>G	p.Pro67Arg	p.P67R	ENST00000375401	NM_004187.3	67	cCc/cGc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914722	39914722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	100	294	0	ENST00000378444.4:c.4640G>A	p.Arg1547Gln	p.R1547Q	ENST00000378444	NM_001123385.1	1547	cGa/cAa																																																																														
BTK	695	MSKCC	GRCh37	X	100608960	100608960	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	80	252	0	ENST00000308731.7:c.1648G>T	p.Glu550Ter	p.E550*	ENST00000308731	NM_000061.2	550	Gaa/Taa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11189895	11189895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	27	472	0	ENST00000361445.4:c.5614G>C	p.Asp1872His	p.D1872H	ENST00000361445	NM_004958.3	1872	Gat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059215	27059215	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	52	554	0	ENST00000324856.7:c.1852A>G	p.Met618Val	p.M618V	ENST00000324856	NM_006015.4	618	Atg/Gtg																																																																														
PGR	5241	MSKCC	GRCh37	11	100962520	100962520	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	50	527	0	ENST00000325455.5:c.1877A>T	p.Lys626Met	p.K626M	ENST00000325455	NM_001202474.3	626	aAg/aTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285612	46285612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	79	365	0	ENST00000334344.6:c.4972G>A	p.Gly1658Arg	p.G1658R	ENST00000334344	NM_152641.2	1658	Gga/Aga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2108770	2108770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	69	761	1	ENST00000219476.3:c.871C>A	p.Leu291Met	p.L291M	ENST00000219476	NM_000548.3	291	Ctg/Atg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226166	2226166	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	96	936	0	ENST00000326181.6:c.1863C>A	p.Tyr621Ter	p.Y621*	ENST00000326181	NM_032271.2	621	taC/taA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984534	72984534	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	169	936	1	ENST00000268489.5:c.3050A>T	p.His1017Leu	p.H1017L	ENST00000268489	NM_006885.3	1017	cAc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	DEL	C	C	-			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	224	869	0	ENST00000269305.4:c.376-1del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
NCOR1	9611	MSKCC	GRCh37	17	16022782	16022782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	96	387	0	ENST00000268712.3:c.1870G>A	p.Glu624Lys	p.E624K	ENST00000268712	NM_006311.3	624	Gag/Aag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207598	2207599	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	192	803	2	ENST00000398665.3:c.882_883delinsTT	p.Glu295Ter	p.E295*	ENST00000398665	NM_032482.2	294	gtGGag/gtTTag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602322	10602322	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs779729664		P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	241	1018	0	ENST00000171111.5:c.1256G>C	p.Gly419Ala	p.G419A	ENST00000171111	NM_203500.1	419	gGg/gCg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11107188	11107188	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	159	710	1	ENST00000344626.4:c.1780G>T	p.Gly594Ter	p.G594*	ENST00000344626	NM_003072.3	594	Gga/Tga																																																																														
CIC	23152	MSKCC	GRCh37	19	42799342	42799342	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	73	386	0	ENST00000575354.2:c.4826G>T	p.Ter1609LeuextTer63	p.*1609Lext*63	ENST00000575354	NM_015125.3	1609	tGa/tTa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022283	31022283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	84	393	0	ENST00000375687.4:c.1768A>G	p.Thr590Ala	p.T590A	ENST00000375687	NM_015338.5	590	Act/Gct																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933708	49933708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	77	991	0	ENST00000296474.3:c.2569T>C	p.Phe857Leu	p.F857L	ENST00000296474	NM_002447.2	857	Ttt/Ctt																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205023	128205023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	69	857	0	ENST00000341105.2:c.418G>C	p.Val140Leu	p.V140L	ENST00000341105	NM_032638.4	140	Gtg/Ctg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185028	32185028	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs140082058		P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	159	764	1	ENST00000375023.3:c.1640G>T	p.Arg547Leu	p.R547L	ENST00000375023	NM_004557.3	547	cGa/cTa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982102	93982102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	85	439	0	ENST00000369303.4:c.1363C>G	p.Leu455Val	p.L455V	ENST00000369303	NM_004440.3	455	Ctg/Gtg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453081	140453081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	70	342	0	ENST00000288602.6:c.1854G>T	p.Leu618Phe	p.L618F	ENST00000288602	NM_004333.4	618	ttG/ttT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	76	488	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073742	8073743	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1212152375		P-0039703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	46	383	0	ENST00000377482.5:c.916dup	p.Thr306AsnfsTer6	p.T306Nfs*6	ENST00000377482	NM_018948.3	306	act/aAct																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0039788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	182	354	0	ENST00000288135.5:c.1669_1674del	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0039788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	459	438	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
KIT	3815	MSKCC	GRCh37	4	55599338	55599338	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	243	348	0	ENST00000288135.5:c.2464A>T	p.Asn822Tyr	p.N822Y	ENST00000288135	NM_000222.2	822	Aat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	265	591	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653829	89653829	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	127	290	0	ENST00000371953.3:c.127G>T	p.Glu43Ter	p.E43*	ENST00000371953	NM_000314.4	43	Gaa/Taa																																																																														
RARA	5914	MSKCC	GRCh37	17	38508245	38508245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	88	455	1	ENST00000254066.5:c.553G>A	p.Gly185Arg	p.G185R	ENST00000254066	NM_000964.3	185	Ggg/Agg																																																																														
PARP1	142	MSKCC	GRCh37	1	226564936	226564936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369900729		P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	86	412	0	ENST00000366794.5:c.1814C>T	p.Pro605Leu	p.P605L	ENST00000366794	NM_001618.3	605	cCg/cTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133249752	133249752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs776770625		P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	136	324	0	ENST00000320574.5:c.1471G>A	p.Glu491Lys	p.E491K	ENST00000320574	NM_006231.2	491	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678539	88678539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	148	355	0	ENST00000360948.2:c.997C>A	p.Leu333Met	p.L333M	ENST00000360948	NM_001012338.2	333	Ctg/Atg																																																																														
KDR	3791	MSKCC	GRCh37	4	55946328	55946328	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	79	179	0	ENST00000263923.4:c.3851G>T	p.Gly1284Val	p.G1284V	ENST00000263923	NM_002253.2	1284	gGa/gTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245344	153245344	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	156	368	0	ENST00000281708.4:c.1847del	p.Thr616AsnfsTer12	p.T616Nfs*12	ENST00000281708	NM_033632.3	616	aCa/aa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205363	38205373	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGGGGCTAA	AGTGGGGCTAA	-			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	328	563	0	ENST00000317025.8:c.317_327del	p.Phe106Ter	p.F106*	ENST00000317025	NM_023034.1	106	tTTAGCCCCACT/t																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412005	63412005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	132	310	0	ENST00000330258.3:c.1162G>T	p.Val388Leu	p.V388L	ENST00000330258	NM_152424.3	388	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579317	7579317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	378	665	0	ENST00000269305.4:c.370T>C	p.Cys124Arg	p.C124R	ENST00000269305	NM_001126112.2	124	Tgc/Cgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	787	602	0				ENST00000310581	NM_198253.2																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15292400	15292400	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	487	799	0	ENST00000263388.2:c.2779G>C	p.Asp927His	p.D927H	ENST00000263388	NM_000435.2	927	Gac/Cac																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918986	50918986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	403	757	1	ENST00000440232.2:c.2723G>C	p.Arg908Thr	p.R908T	ENST00000440232	NM_002691.3	908	aGg/aCg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119666194	119666194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	59	137	0	ENST00000316626.5:c.287G>T	p.Arg96Leu	p.R96L	ENST00000316626		96	cGa/cTa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141570596	141570596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	149	567	0	ENST00000220592.5:c.532G>A	p.Gly178Ser	p.G178S	ENST00000220592	NM_012154.3	178	Ggc/Agc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437801	52437802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	149	680	0	ENST00000460680.1:c.1359dup	p.Glu454ArgfsTer15	p.E454Rfs*15	ENST00000460680	NM_004656.3	453	-/A																																																																														
VHL	7428	MSKCC	GRCh37	3	10191524	10191524	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	149	559	0	ENST00000256474.2:c.517G>T	p.Glu173Ter	p.E173*	ENST00000256474	NM_000551.3	173	Gag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597492	52597511	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TGAGGAACAATTGGTTTTCT	TGAGGAACAATTGGTTTTCT	-			P-0039992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	80	398	0	ENST00000394830.3:c.3801-2_3818del		p.X1267_splice	ENST00000394830	NM_018313.4	1267																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	204	894	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391214	89391214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs530556931		P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	167	391	0	ENST00000336596.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000336596	NM_005233.5	427	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7572991	7572991	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	104	490	0	ENST00000269305.4:c.1118del	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	373	aAg/ag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100093	157100120	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCGGCGGCAGCAGCAGGAGGCG	GCGGCGGCGGCGGCAGCAGCAGGAGGCG	-			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	22	32	0	ENST00000346085.5:c.1044_1071del	p.Ala349MetfsTer11	p.A349Mfs*11	ENST00000346085	NM_020732.3	344	GCGGCGGCGGCGGCAGCAGCAGGAGGCGgc/gc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201508	67201508	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	177	832	2	ENST00000312629.5:c.952del	p.Asp318MetfsTer14	p.D318Mfs*14	ENST00000312629	NM_003952.2	317	Ggg/gg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859694	57859694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	120	471	0	ENST00000228682.2:c.748G>C	p.Glu250Gln	p.E250Q	ENST00000228682	NM_005269.2	250	Gag/Cag																																																																														
BLM	641	MSKCC	GRCh37	15	91293210	91293210	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	46	404	0	ENST00000355112.3:c.712A>G	p.Ile238Val	p.I238V	ENST00000355112	NM_000057.2	238	Atc/Gtc																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732442	74732442	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	76	384	0	ENST00000359995.5:c.467del	p.Arg156HisfsTer76	p.R156Hfs*76	ENST00000359995	NM_001195427.1	156	cGa/ca																																																																														
AXL	558	MSKCC	GRCh37	19	41726601	41726601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775741490		P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	223	818	0	ENST00000301178.4:c.146G>A	p.Gly49Glu	p.G49E	ENST00000301178	NM_021913.4	49	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112170705	112170705	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	330	486	1	ENST00000257430.4:c.1801G>T	p.Glu601Ter	p.E601*	ENST00000257430	NM_000038.5	601	Gag/Tag																																																																														
IRF4	3662	MSKCC	GRCh37	6	401737	401737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	194	712	1	ENST00000380956.4:c.1059C>A	p.Asp353Glu	p.D353E	ENST00000380956	NM_001195286.1	353	gaC/gaA																																																																														
CDK6	1021	MSKCC	GRCh37	7	92244558	92244558	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	40	378	0	ENST00000265734.4:c.877A>C	p.Ser293Arg	p.S293R	ENST00000265734	NM_001259.6	293	Agt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	107	376	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	72	509	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170453	11170453	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	267	763	1	ENST00000344626.4:c.4660C>T	p.Gln1554Ter	p.Q1554*	ENST00000344626	NM_003072.3	1554	Cag/Tag																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15827362	15827362	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1461565397		P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	162	534	2	ENST00000307771.7:c.478G>A	p.Val160Met	p.V160M	ENST00000307771	NM_005089.3	160	Gtg/Atg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187847	11187847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	86	556	0	ENST00000361445.4:c.6050T>C	p.Ile2017Thr	p.I2017T	ENST00000361445	NM_004958.3	2017	aTc/aCc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193104527	193104527	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	47	382	0	ENST00000367435.3:c.314C>A	p.Ser105Ter	p.S105*	ENST00000367435	NM_024529.4	105	tCg/tAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976702	2976702	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755090332		P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	83	560	4	ENST00000396946.4:c.1310G>A	p.Arg437His	p.R437H	ENST00000396946	NM_032415.4	437	cGc/cAc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729709	41729709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768547360		P-0040037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	183	548	2	ENST00000242208.4:c.820G>A	p.Gly274Arg	p.G274R	ENST00000242208	NM_002192.2	274	Gga/Aga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242484	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAACAT	AATTAAGAGAAGCAACAT	-	rs121913422		P-0040079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	23	377	0	ENST00000275493.2:c.2237_2254del	p.Glu746_Ser752delinsAla	p.E746_S752delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATct/gct																																																																														
SESN1	27244	MSKCC	GRCh37	6	109315685	109315685	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	72	411	0	ENST00000436639.2:c.1100G>C	p.Ser367Thr	p.S367T	ENST00000436639	NM_014454.2	367	aGt/aCt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	4440	517	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RB1	5925	MSKCC	GRCh37	13	49047527	49047527	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs587778850		P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	18	215	0	ENST00000267163.4:c.2520+1G>T		p.X840_splice	ENST00000267163	NM_000321.2	840																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	107	534	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72845502	72845502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	24	490	0	ENST00000268489.5:c.3838G>A	p.Asp1280Asn	p.D1280N	ENST00000268489	NM_006885.3	1280	Gac/Aac																																																																														
PAK7	0	MSKCC	GRCh37	20	9543544	9543544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	19	373	0	ENST00000353224.5:c.1610A>G	p.His537Arg	p.H537R	ENST00000353224	NM_177990.2	537	cAc/cGc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005029	150005029	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	16	360	0	ENST00000253339.5:c.1196C>G	p.Ser399Ter	p.S399*	ENST00000253339		399	tCa/tGa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034440	47034440	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	71	541	0	ENST00000329236.7:c.294del	p.Phe98LeufsTer91	p.F98Lfs*91	ENST00000329236	NM_001204466.1	98	ttC/tt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	87	345	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	172	445	5	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	141	644	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	180	333	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31381362	31381362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113400552		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	131	426	1	ENST00000328111.2:c.1087C>T	p.Arg363Cys	p.R363C	ENST00000328111	NM_006892.3	363	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	120	571	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	27	329	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	62	581	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	156	601	0	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	112	477	1	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781157	135781157	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	161	613	0	ENST00000298552.3:c.1808del	p.Pro603ArgfsTer26	p.P603Rfs*26	ENST00000298552	NM_001162426.1	603	cCg/cg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	111	409	1	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	216	442	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	115	431	4	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	129	630	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	141	519	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672462	30672462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148215318		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	130	568	0	ENST00000376406.3:c.4498G>A	p.Ala1500Thr	p.A1500T	ENST00000376406	NM_014641.2	1500	Gcc/Acc																																																																														
FANCC	2176	MSKCC	GRCh37	9	98003011	98003011	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	53	252	1	ENST00000289081.3:c.265del	p.Ile89PhefsTer2	p.I89Ffs*2	ENST00000289081	NM_000136.2	89	Att/tt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517769	176517769	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs142240686		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	151	663	1	ENST00000292408.4:c.379G>T	p.Asp127Tyr	p.D127Y	ENST00000292408	NM_213647.1	127	Gat/Tat																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894928	101894928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	81	323	0	ENST00000374994.4:c.481G>A	p.Glu161Lys	p.E161K	ENST00000374994	NM_004612.2	161	Gaa/Aaa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741255	145741255	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376045624		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	178	728	0	ENST00000428558.2:c.1151G>A	p.Arg384Gln	p.R384Q	ENST00000428558	NM_004260.3	384	cGg/cAg																																																																														
ALK	238	MSKCC	GRCh37	2	29446388	29446388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769322016		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	149	699	0	ENST00000389048.3:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000389048	NM_004304.4	1060	cGc/cAc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631883	90631883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	151	621	0	ENST00000330062.3:c.470T>C	p.Ile157Thr	p.I157T	ENST00000330062	NM_002168.2	157	aTc/aCc																																																																														
IRF4	3662	MSKCC	GRCh37	6	395001	395001	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1300046652		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	95	396	1	ENST00000380956.4:c.402del	p.Gly135GlufsTer14	p.G135Efs*14	ENST00000380956	NM_001195286.1	133	Aaa/aa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	138	627	1	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245357	153245357	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	97	460	0	ENST00000281708.4:c.1834C>T	p.Gln612Ter	p.Q612*	ENST00000281708	NM_033632.3	612	Cag/Tag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948747	71948748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760925109		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	110	735	3	ENST00000298229.2:c.3466dup	p.Arg1156ProfsTer59	p.R1156Pfs*59	ENST00000298229	NM_001567.3	1153	-/C																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794356	242794356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144217487		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	150	685	3	ENST00000334409.5:c.586G>A	p.Ala196Thr	p.A196T	ENST00000334409	NM_005018.2	196	Gca/Aca																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40460280	40460280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	135	543	0	ENST00000345506.4:c.1991G>A	p.Ser664Asn	p.S664N	ENST00000345506	NM_003152.3	664	aGc/aAc																																																																														
CD276	80381	MSKCC	GRCh37	15	73991987	73991987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770116040		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	157	631	0	ENST00000318443.5:c.7C>T	p.Arg3Cys	p.R3C	ENST00000318443	NM_001024736.1	3	Cgt/Tgt																																																																														
RAD51	5888	MSKCC	GRCh37	15	41021708	41021708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	76	338	0	ENST00000267868.3:c.650C>T	p.Ala217Val	p.A217V	ENST00000267868	NM_002875.4	217	gCa/gTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390962	139390962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs560981171		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	218	877	0	ENST00000277541.6:c.7229C>T	p.Pro2410Leu	p.P2410L	ENST00000277541	NM_017617.3	2410	cCg/cTg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249927	110249927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	128	579	0	ENST00000374672.4:c.748G>A	p.Val250Ile	p.V250I	ENST00000374672	NM_004235.4	250	Gtc/Atc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217223	66217223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	130	393	0	ENST00000273854.3:c.2392C>T	p.His798Tyr	p.H798Y	ENST00000273854	NM_004439.5	798	Cat/Tat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517886	187517886	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs373689624		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	124	422	0	ENST00000441802.2:c.12808C>T	p.Arg4270Ter	p.R4270*	ENST00000441802	NM_005245.3	4270	Cga/Tga																																																																														
CIC	23152	MSKCC	GRCh37	19	42799130	42799131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	143	763	0	ENST00000575354.2:c.4620dup	p.Thr1541HisfsTer18	p.T1541Hfs*18	ENST00000575354	NM_015125.3	1538	-/C																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100097	27100098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	54	654	1	ENST00000324856.7:c.3896dup	p.Asn1299LysfsTer24	p.N1299Kfs*24	ENST00000324856	NM_006015.4	1298	gga/ggAa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45800107	45800107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	162	581	0	ENST00000372115.3:c.113A>C	p.Lys38Thr	p.K38T	ENST00000372115	NM_001048171.1	38	aAg/aCg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458968	120458968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	194	689	0	ENST00000256646.2:c.6377C>T	p.Ala2126Val	p.A2126V	ENST00000256646	NM_024408.3	2126	gCc/gTc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156830871	156830871	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	137	524	0	ENST00000524377.1:c.145C>T	p.Arg49Ter	p.R49*	ENST00000524377	NM_002529.3	49	Cga/Tga																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852218	63852218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs916811022		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	128	535	0	ENST00000279873.7:c.2996G>A	p.Arg999Gln	p.R999Q	ENST00000279873	NM_032199.2	999	cGg/cAg																																																																														
YAP1	10413	MSKCC	GRCh37	11	102100561	102100561	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	122	462	1	ENST00000282441.5:c.1405G>T	p.Glu469Ter	p.E469*	ENST00000282441	NM_001130145.2	469	Gag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930708	32930708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	128	449	0	ENST00000380152.3:c.7579G>A	p.Val2527Ile	p.V2527I	ENST00000380152		2527	Gta/Ata																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066889	30066889	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1303923680		P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	92	537	0	ENST00000331968.5:c.2242G>A	p.Ala748Thr	p.A748T	ENST00000331968	NM_002742.2	748	Gct/Act																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420260	88420260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	124	522	1	ENST00000360948.2:c.2426G>T	p.Arg809Met	p.R809M	ENST00000360948	NM_001012338.2	809	aGg/aTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821945	72821946	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	51	329	0	ENST00000268489.5:c.10229dup	p.Asp3411ArgfsTer20	p.D3411Rfs*20	ENST00000268489	NM_006885.3	3410	cca/ccCa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993551	72993551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	161	626	0	ENST00000268489.5:c.494C>A	p.Pro165His	p.P165H	ENST00000268489	NM_006885.3	165	cCt/cAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350617	89350617	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	162	663	0	ENST00000301030.4:c.2333A>C	p.Lys778Thr	p.K778T	ENST00000301030	NM_001256183.1	778	aAg/aCg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40457661	40457661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	129	612	0	ENST00000345506.4:c.1414G>T	p.Gly472Cys	p.G472C	ENST00000345506	NM_003152.3	472	Ggc/Tgc																																																																														
MSI2	124540	MSKCC	GRCh37	17	55339517	55339517	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	144	480	0	ENST00000284073.2:c.279del	p.Val95LeufsTer20	p.V95Lfs*20	ENST00000284073	NM_138962.2	92	gaC/ga																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2193765	2193765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	147	511	0	ENST00000398665.3:c.571C>A	p.Pro191Thr	p.P191T	ENST00000398665	NM_032482.2	191	Ccg/Acg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221684	36221684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	184	778	0	ENST00000222270.7:c.5353C>T	p.Pro1785Ser	p.P1785S	ENST00000222270	NM_014727.1	1785	Cca/Tca																																																																														
POLD1	5424	MSKCC	GRCh37	19	50920494	50920494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	134	592	0	ENST00000440232.2:c.3186G>T	p.Gln1062His	p.Q1062H	ENST00000440232	NM_002691.3	1062	caG/caT																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249912	39249912	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	145	530	0	ENST00000402219.2:c.1657A>G	p.Met553Val	p.M553V	ENST00000402219	NM_005633.3	553	Atg/Gtg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248605	212248605	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	106	455	0	ENST00000342788.4:c.3662A>G	p.Tyr1221Cys	p.Y1221C	ENST00000342788	NM_005235.2	1221	tAc/tGc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661677	227661677	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	25	613	0	ENST00000305123.5:c.1778A>T	p.Glu593Val	p.E593V	ENST00000305123	NM_005544.2	593	gAg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557751	187557752	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	81	307	0	ENST00000441802.2:c.3959_3960del	p.Tyr1320Ter	p.Y1320*	ENST00000441802	NM_005245.3	1320	tAT/t																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31466379	31466379	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	134	559	0	ENST00000344624.3:c.2376del	p.Lys792AsnfsTer7	p.K792Nfs*7	ENST00000344624		792	aaA/aa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168825	56168825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	86	354	0	ENST00000399503.3:c.1679G>T	p.Trp560Leu	p.W560L	ENST00000399503	NM_005921.1	560	tGg/tTg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449811	149449811	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	179	669	0	ENST00000286301.3:c.1253del	p.Leu418CysfsTer12	p.L418Cfs*12	ENST00000286301	NM_005211.3	418	tTg/tg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149510227	149510227	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	102	498	0	ENST00000261799.4:c.1244-2A>G		p.X415_splice	ENST00000261799	NM_002609.3	415																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518701	176518701	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	145	597	0	ENST00000292408.4:c.619T>C	p.Trp207Arg	p.W207R	ENST00000292408	NM_213647.1	207	Tgg/Cgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031750	69031750	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	100	452	0	ENST00000288368.4:c.3504+1G>A		p.X1168_splice	ENST00000288368	NM_024870.2	1168																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460555	8460555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	84	347	0	ENST00000356435.5:c.3731G>A	p.Ser1244Asn	p.S1244N	ENST00000356435		1244	aGc/aAc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53230732	53230732	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	29	293	0	ENST00000375401.3:c.2061G>T	p.Lys687Asn	p.K687N	ENST00000375401	NM_004187.3	687	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	95	857	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66766261	66766261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	41	404	0	ENST00000374690.3:c.1273G>T	p.Gly425Trp	p.G425W	ENST00000374690	NM_000044.3	425	Ggg/Tgg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225300	2225300	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	87	942	0	ENST00000326181.6:c.1387-2A>T		p.X463_splice	ENST00000326181	NM_032271.2	463																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45867035	45867035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	67	596	0	ENST00000391945.4:c.1084G>T	p.Ala362Ser	p.A362S	ENST00000391945	NM_000400.3	362	Gcc/Tcc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627264	86627265	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	36	347	0	ENST00000274376.6:c.642dup	p.Ser215ValfsTer8	p.S215Vfs*8	ENST00000274376	NM_002890.2	213	-/G																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411155	63411155	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	55	791	0	ENST00000330258.3:c.2012C>G	p.Ser671Ter	p.S671*	ENST00000330258	NM_152424.3	671	tCa/tGa																																																																														
AR	367	MSKCC	GRCh37	X	66863181	66863181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	47	592	0	ENST00000374690.3:c.1700C>G	p.Ala567Gly	p.A567G	ENST00000374690	NM_000044.3	567	gCt/gGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	57	267	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	65	241	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	73	281	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96919691	96919691	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200327514		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	86	471	0	ENST00000258439.3:c.572C>T	p.Thr191Met	p.T191M	ENST00000258439	NM_001193304.2	191	aCg/aTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916526	39916526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1265777184		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	147	553	1	ENST00000378444.4:c.4477C>T	p.Arg1493Trp	p.R1493W	ENST00000378444	NM_001123385.1	1493	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	181	626	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
AXL	558	MSKCC	GRCh37	19	41727880	41727880	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756018335		P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	145	615	2	ENST00000301178.4:c.505G>A	p.Val169Met	p.V169M	ENST00000301178	NM_021913.4	169	Gtg/Atg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374890	45374890	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	98	419	0	ENST00000262160.6:c.953A>T	p.Asn318Ile	p.N318I	ENST00000262160	NM_005901.5	318	aAt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	527	740	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	48941654	48941654	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs776534331		P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	198	190	0	ENST00000267163.4:c.964G>T	p.Glu322Ter	p.E322*	ENST00000267163	NM_000321.2	322	Gaa/Taa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076827	72076827	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	558	381	0	ENST00000357731.5:c.670G>T	p.Ala224Ser	p.A224S	ENST00000357731	NM_173808.2	224	Gct/Tct																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633514	69633514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	104	299	0	ENST00000334134.2:c.188G>T	p.Arg63Leu	p.R63L	ENST00000334134	NM_005247.2	63	cGc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29670033	29670033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	41	336	0	ENST00000358273.4:c.7069G>C	p.Glu2357Gln	p.E2357Q	ENST00000358273	NM_001042492.2	2357	Gag/Cag																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78858880	78858880	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	465	749	1	ENST00000306801.3:c.1915A>T	p.Thr639Ser	p.T639S	ENST00000306801	NM_020761.2	639	Acc/Tcc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37089163	37089163	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	160	402	0	ENST00000231790.2:c.1885G>C	p.Glu629Gln	p.E629Q	ENST00000231790	NM_000249.3	629	Gaa/Caa																																																																														
ATR	545	MSKCC	GRCh37	3	142281357	142281357	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	403	587	0	ENST00000350721.4:c.887C>G	p.Ser296Ter	p.S296*	ENST00000350721	NM_001184.3	296	tCa/tGa																																																																														
KDR	3791	MSKCC	GRCh37	4	55955906	55955906	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	379	531	0	ENST00000263923.4:c.3256A>T	p.Ser1086Cys	p.S1086C	ENST00000263923	NM_002253.2	1086	Agt/Tgt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522612	176522613	+	missense_variant	Missense_Mutation	DNP	CC	CC	TG			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	442	768	0	ENST00000292408.4:c.1709_1710delinsTG	p.Pro570Leu	p.P570L	ENST00000292408	NM_213647.1	570	cCC/cTG																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680791	30680791	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1366797290		P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	200	574	0	ENST00000376406.3:c.928C>T	p.Pro310Ser	p.P310S	ENST00000376406	NM_014641.2	310	Cct/Tct																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508148	106508148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	113	328	1	ENST00000359195.3:c.142C>A	p.Gln48Lys	p.Q48K	ENST00000359195	NM_002649.2	48	Cag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116435715	116435715	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	120	417	0	ENST00000397752.3:c.3807del	p.Phe1269LeufsTer8	p.F1269Lfs*8	ENST00000397752	NM_000245.2	1269	Ttt/tt																																																																														
SMO	6608	MSKCC	GRCh37	7	128852084	128852084	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1327533871		P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	284	826	0	ENST00000249373.3:c.2156G>A	p.Trp719Ter	p.W719*	ENST00000249373	NM_005631.4	719	tGg/tAg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859911	117859911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	178	242	0	ENST00000297338.2:c.1724G>T	p.Gly575Val	p.G575V	ENST00000297338	NM_006265.2	575	gGa/gTa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522612	176522612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	442	768	0	ENST00000292408.4:c.1709C>T	p.Pro570Leu	p.P570L	ENST00000292408	NM_213647.1	570	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	803	764	1	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202918		P-0040448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	246	454	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420104	41420104	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0040448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	435	278	1	ENST00000373198.4:c.217T>A	p.Ser73Thr	p.S73T	ENST00000373198	NM_133170.3	73	Tct/Act																																																																														
MSH3	4437	MSKCC	GRCh37	5	80063814	80063814	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	201	486	1	ENST00000265081.6:c.1959A>C	p.Gln653His	p.Q653H	ENST00000265081	NM_002439.4	653	caA/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	79	373	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	133	610	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969848	81969848	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs568724894		P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	108	542	1	ENST00000359376.3:c.2917G>A	p.Asp973Asn	p.D973N	ENST00000359376	NM_002661.3	973	Gac/Aac																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	127	757	1	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175642	112175642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	48	263	0	ENST00000257430.4:c.4351G>T	p.Glu1451Ter	p.E1451*	ENST00000257430	NM_000038.5	1451	Gaa/Taa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670255	134670255	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1426484610		P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	70	469	0	ENST00000398015.3:c.166C>T	p.Arg56Cys	p.R56C	ENST00000398015	NM_004441.4	56	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112116598	112116598	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs137854577		P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	46	288	0	ENST00000257430.4:c.643C>T	p.Gln215Ter	p.Q215*	ENST00000257430	NM_000038.5	215	Cag/Tag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911561	114911561	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	91	440	0	ENST00000543371.1:c.1079A>C	p.Tyr360Ser	p.Y360S	ENST00000543371	NM_001198531.1	360	tAt/tCt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274222	10274222	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	53	403	0	ENST00000330684.3:c.47T>C	p.Leu16Pro	p.L16P	ENST00000330684	NM_001134407.1	16	cTg/cCg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120123	70120124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	41	169	0	ENST00000245479.2:c.1126dup	p.Gln376ProfsTer202	p.Q376Pfs*202	ENST00000245479	NM_000346.3	375	-/C																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604674	48604674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	61	340	0	ENST00000342988.3:c.1496G>A	p.Cys499Tyr	p.C499Y	ENST00000342988	NM_005359.5	499	tGc/tAc																																																																														
SMO	6608	MSKCC	GRCh37	7	128849216	128849216	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755295928		P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	98	494	0	ENST00000249373.3:c.1444C>T	p.Arg482Cys	p.R482C	ENST00000249373	NM_005631.4	482	Cgc/Tgc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137323752	137323752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	121	748	0	ENST00000481739.1:c.1045G>T	p.Val349Leu	p.V349L	ENST00000481739	NM_002957.4	349	Gtg/Ttg																																																																														
MGA	23269	MSKCC	GRCh37	15	42057249	42057254	+	inframe_deletion	In_Frame_Del	DEL	TGGCTC	TGGCTC	-			P-0040493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	83	447	0	ENST00000219905.7:c.7911_7916del	p.Ala2638_Leu2639del	p.A2638_L2639del	ENST00000219905	NM_001164273.1	2637	gTGGCTCta/gta																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068939	30068939	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	177	618	0	ENST00000331968.5:c.1990G>T	p.Gly664Ter	p.G664*	ENST00000331968	NM_002742.2	664	Gga/Tga																																																																														
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	210	879	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0040510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	155	375	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194884	29194885	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0040510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	192	793	0	ENST00000240100.2:c.843_844delinsTT	p.Gln281_Ala282delinsHisSer	p.Q281_A282delinsHS	ENST00000240100	NM_001394.6	281	caGGcg/caTTcg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207717	29207717	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268692884		P-0040510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	200	691	0	ENST00000240100.2:c.79G>A	p.Gly27Ser	p.G27S	ENST00000240100	NM_001394.6	27	Ggc/Agc																																																																														
ABL1	25	MSKCC	GRCh37	9	133750438	133750438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	171	541	0	ENST00000318560.5:c.1269G>T	p.Trp423Cys	p.W423C	ENST00000318560	NM_005157.4	423	tgG/tgT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0040513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	166	447	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95584087	95584088	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAATCTAAGAAAATTATACA			P-0040513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	21	256	0	ENST00000343455.3:c.1377-16_1380dup	p.Ile461CysfsTer7	p.I461Cfs*7	ENST00000343455	NM_177438.2	460	-/TGTATAATTTTCTTAGATTG																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474823	138474823	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0040513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	17	285	0	ENST00000289153.2:c.172-2A>G		p.X58_splice	ENST00000289153	NM_006219.2	58																																																																															
PARK2	0	MSKCC	GRCh37	6	161969888	161969888	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	36	487	0	ENST00000366898.1:c.1081G>A	p.Gly361Arg	p.G361R	ENST00000366898	NM_004562.2	361	Ggg/Agg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0040555-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	8	261	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0040555-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			814	40	940	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954180	32954180	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45580035		P-0040555-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	24	494	0	ENST00000380152.3:c.9154C>T	p.Arg3052Trp	p.R3052W	ENST00000380152		3052	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	166	754	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	81	299	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247328	153247328	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	178	354	0	ENST00000281708.4:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000281708	NM_033632.3	492	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	143	709	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
GATA1	2623	MSKCC	GRCh37	X	48652464	48652464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	293	513	1	ENST00000376670.3:c.1135C>A	p.Leu379Ile	p.L379I	ENST00000376670	NM_002049.3	379	Ctc/Atc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532535	63532535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	87	910	0	ENST00000307078.5:c.2044G>A	p.Asp682Asn	p.D682N	ENST00000307078	NM_004655.3	682	Gac/Aac																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749499	41749499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	138	641	0	ENST00000226382.2:c.296G>A	p.Arg99Gln	p.R99Q	ENST00000226382	NM_003924.3	99	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	55	369	0	ENST00000257430.4:c.4128del	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/ta																																																																														
NF2	4771	MSKCC	GRCh37	22	30035103	30035103	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	65	453	0	ENST00000338641.4:c.265G>T	p.Glu89Ter	p.E89*	ENST00000338641	NM_000268.3	89	Gaa/Taa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0040688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	1525	560	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0040688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	303	733	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
SRC	6714	MSKCC	GRCh37	20	36012653	36012653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	131	220	0	ENST00000358208.4:c.97C>T	p.Pro33Ser	p.P33S	ENST00000358208		33	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	187	326	1				ENST00000310581	NM_198253.2																																																																																
CTCF	10664	MSKCC	GRCh37	16	67645472	67645472	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs777993880		P-0040688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	130	345	0	ENST00000264010.4:c.737T>C	p.Val246Ala	p.V246A	ENST00000264010	NM_006565.3	246	gTt/gCt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729153	66729153	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519856		P-0040744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	65	576	0	ENST00000307102.5:c.361T>A	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	121	Tgc/Agc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852239	63852239	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	77	520	0	ENST00000279873.7:c.3017T>A	p.Ile1006Asn	p.I1006N	ENST00000279873	NM_032199.2	1006	aTt/aAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438566	49438566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	58	665	0	ENST00000301067.7:c.4924G>A	p.Asp1642Asn	p.D1642N	ENST00000301067	NM_003482.3	1642	Gat/Aat																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336063	73336063	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0040744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	25	165	0	ENST00000377767.4:c.2340A>C	p.Arg780Ser	p.R780S	ENST00000377767	NM_014953.3	780	agA/agC																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729149	66729149	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	60	570	0	ENST00000307102.5:c.357T>G	p.His119Gln	p.H119Q	ENST00000307102	NM_002755.3	119	caT/caG																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105590	11105591	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0040744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	74	665	1	ENST00000344626.4:c.1506_1507delinsTT	p.Lys502_Ala503delinsAsnSer	p.K502_A503delinsNS	ENST00000344626	NM_003072.3	502	aaGGca/aaTTca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	157	406	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	422	850	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361214	66361214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375878596		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	21	352	0	ENST00000273854.3:c.958G>A	p.Gly320Ser	p.G320S	ENST00000273854	NM_004439.5	320	Ggc/Agc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857127	9857127	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs976259560		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	134	375	0	ENST00000330684.3:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000330684	NM_001134407.1	1425	tCg/tTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231380	98231380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372555269		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	279	668	0	ENST00000331920.6:c.1903G>A	p.Asp635Asn	p.D635N	ENST00000331920	NM_000264.3	635	Gac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991700	72991700	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62639304		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	10	207	0	ENST00000268489.5:c.2345C>T	p.Ala782Val	p.A782V	ENST00000268489	NM_006885.3	782	gCg/gTg																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631917	90631918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs780120934		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	145	727	3	ENST00000330062.3:c.435dup	p.Thr146AspfsTer126	p.T146Dfs*126	ENST00000330062	NM_002168.2	145	-/G																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133695	2133695	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	68	607	0	ENST00000219476.3:c.3884-1G>T		p.X1295_splice	ENST00000219476	NM_000548.3	1295																																																																															
IGF1	3479	MSKCC	GRCh37	12	102869481	102869481	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	94	538	0	ENST00000307046.8:c.160T>C	p.Cys54Arg	p.C54R	ENST00000307046	NM_001111285.1	54	Tgc/Cgc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115111981	115111981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	125	737	0	ENST00000257566.3:c.1759C>A	p.Leu587Met	p.L587M	ENST00000257566	NM_016569.3	587	Ctg/Atg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492880	56492881	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGC			P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	146	375	0	ENST00000407977.2:c.55_58dup	p.Thr20SerfsTer21	p.T20Sfs*21	ENST00000407977		20	acc/aGCTAcc																																																																														
CARM1	10498	MSKCC	GRCh37	19	10982523	10982523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	12	86	0	ENST00000327064.4:c.145C>T	p.Arg49Trp	p.R49W	ENST00000327064	NM_199141.1	49	Cgg/Tgg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57474016	57474016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	40	317	0	ENST00000371085.3:c.233A>G	p.Gln78Arg	p.Q78R	ENST00000371085	NM_000516.4	78	cAg/cGg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851735	134851735	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867526874		P-0040829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	74	569	0	ENST00000398015.3:c.1141C>T	p.Pro381Ser	p.P381S	ENST00000398015	NM_004441.4	381	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	84	725	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39742680	39742680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	66	402	0	ENST00000361337.2:c.1523G>T	p.Arg508Leu	p.R508L	ENST00000361337	NM_003286.2	508	cGt/cTt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73351578	73351578	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs757502879		P-0040833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	30	207	0	ENST00000377767.4:c.634G>T	p.Ala212Ser	p.A212S	ENST00000377767	NM_014953.3	212	Gct/Tct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438188	56438188	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	109	744	0	ENST00000407977.2:c.805del	p.Ala269ProfsTer150	p.A269Pfs*150	ENST00000407977		269	Gcc/cc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097643	11097643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	82	848	0	ENST00000344626.4:c.823C>A	p.Gln275Lys	p.Q275K	ENST00000344626	NM_003072.3	275	Cag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	297	450	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	102	473	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459130	120459130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	276	532	0	ENST00000256646.2:c.6215C>T	p.Pro2072Leu	p.P2072L	ENST00000256646	NM_024408.3	2072	cCa/cTa																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245927432	245927432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	71	424	0	ENST00000388985.4:c.1096C>T	p.His366Tyr	p.H366Y	ENST00000388985		366	Cat/Tat																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732896	74732896	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	64	247	0	ENST00000359995.5:c.347G>C	p.Gly116Ala	p.G116A	ENST00000359995	NM_001195427.1	116	gGa/gCa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31016208	31016209	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	137	308	0	ENST00000375687.4:c.455dup	p.Tyr152Ter	p.Y152*	ENST00000375687	NM_015338.5	152	tac/tAac																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670840	134670840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	56	371	0	ENST00000398015.3:c.751G>C	p.Gly251Arg	p.G251R	ENST00000398015	NM_004441.4	251	Ggg/Cgg																																																																														
MED12	9968	MSKCC	GRCh37	X	70351431	70351431	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	90	481	0	ENST00000374080.3:c.4080del	p.Leu1361TrpfsTer6	p.L1361Wfs*6	ENST00000374080		1360	tCc/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	177	427	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101271	27101298	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGGGCCCCGCCTATCATGGCGTGAA	CCCAGGGCCCCGCCTATCATGGCGTGAA	-			P-0040934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	123	744	0	ENST00000324856.7:c.4555_4582del	p.Gln1519GlufsTer37	p.Q1519Efs*37	ENST00000324856	NM_006015.4	1518	cCCCAGGGCCCCGCCTATCATGGCGTGAAc/cc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851456	63851456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	233	531	1	ENST00000279873.7:c.2234C>A	p.Ala745Glu	p.A745E	ENST00000279873	NM_032199.2	745	gCg/gAg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646238	3646238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	367	952	0	ENST00000294008.3:c.1840G>T	p.Asp614Tyr	p.D614Y	ENST00000294008	NM_032444.2	614	Gac/Tac																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038357	180038357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	296	737	0	ENST00000261937.6:c.3660C>A	p.Ser1220Arg	p.S1220R	ENST00000261937	NM_182925.4	1220	agC/agA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	32	474	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0040954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	48	474	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579494	7579494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	50	878	0	ENST00000269305.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000269305	NM_001126112.2	65	Aga/Tga																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs104894340		P-0040954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	29	530	0	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt																																																																														
ATM	472	MSKCC	GRCh37	11	108202753	108202753	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs781215442		P-0040954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	26	367	0	ENST00000278616.4:c.7777C>T	p.Gln2593Ter	p.Q2593*	ENST00000278616	NM_000051.3	2593	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	223	457	0				ENST00000310581	NM_198253.2																																																																																
BCOR	54880	MSKCC	GRCh37	X	39931683	39931684	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0040962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	395	679	0	ENST00000378444.4:c.2915dup	p.Tyr972Ter	p.Y972*	ENST00000378444	NM_001123385.1	972	tac/taAc																																																																														
ATM	472	MSKCC	GRCh37	11	108155174	108155174	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	151	364	0	ENST00000278616.4:c.3970del	p.Ser1324ValfsTer25	p.S1324Vfs*25	ENST00000278616	NM_000051.3	1323	Aaa/aa																																																																														
ATM	472	MSKCC	GRCh37	11	108155178	108155178	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1456873569		P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	156	347	0	ENST00000278616.4:c.3971G>T	p.Ser1324Ile	p.S1324I	ENST00000278616	NM_000051.3	1324	aGt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	935	332	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041860	42041860	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	110	382	0	ENST00000219905.7:c.6055G>T	p.Glu2019Ter	p.E2019*	ENST00000219905	NM_001164273.1	2019	Gaa/Taa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274171	10274171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	521	452	0	ENST00000330684.3:c.98C>A	p.Ala33Glu	p.A33E	ENST00000330684	NM_001134407.1	33	gCg/gAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29556068	29556068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	175	215	0	ENST00000358273.4:c.2435T>C	p.Ile812Thr	p.I812T	ENST00000358273	NM_001042492.2	812	aTt/aCt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955065	17955065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	264	720	0	ENST00000458235.1:c.162C>G	p.Cys54Trp	p.C54W	ENST00000458235	NM_000215.3	54	tgC/tgG																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794793	242794793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	301	444	0	ENST00000334409.5:c.416G>C	p.Arg139Pro	p.R139P	ENST00000334409	NM_005018.2	139	cGg/cCg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017790	31017790	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564841799		P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	611	643	0	ENST00000375687.4:c.652C>T	p.Arg218Cys	p.R218C	ENST00000375687	NM_015338.5	218	Cgt/Tgt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748143	41748143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	252	316	0	ENST00000226382.2:c.626G>T	p.Gly209Val	p.G209V	ENST00000226382	NM_003924.3	209	gGg/gTg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056599	26056599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	90	203	0	ENST00000343677.2:c.58G>T	p.Val20Leu	p.V20L	ENST00000343677	NM_005319.3	20	Gta/Tta																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739584	145739584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	506	713	0	ENST00000428558.2:c.1867C>A	p.Arg623Ser	p.R623S	ENST00000428558	NM_004260.3	623	Cgc/Agc																																																																														
SYK	6850	MSKCC	GRCh37	9	93607730	93607730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	83	209	0	ENST00000375746.1:c.432G>T	p.Glu144Asp	p.E144D	ENST00000375746	NM_001174167.1	144	gaG/gaT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039905	47039905	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	479	694	0	ENST00000329236.7:c.1014G>T	p.Gln338His	p.Q338H	ENST00000329236	NM_001204466.1	338	caG/caT																																																																														
AR	367	MSKCC	GRCh37	X	66863189	66863189	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	325	465	0	ENST00000374690.3:c.1708T>C	p.Cys570Arg	p.C570R	ENST00000374690	NM_000044.3	570	Tgt/Cgt																																																																														
ATRX	546	MSKCC	GRCh37	X	76849187	76849187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	473	260	1	ENST00000373344.5:c.6089C>A	p.Ala2030Glu	p.A2030E	ENST00000373344	NM_000489.3	2030	gCa/gAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964125	28964125	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377395740		P-0041037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	58	438	1	ENST00000282397.4:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000282397	NM_002019.4	593	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579316	7579317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	135	683	0	ENST00000269305.4:c.370dup	p.Cys124LeufsTer25	p.C124Lfs*25	ENST00000269305	NM_001126112.2	124	tgc/tTgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604776	48604776	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs377767382		P-0041037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	76	416	0	ENST00000342988.3:c.1598T>C	p.Leu533Pro	p.L533P	ENST00000342988	NM_005359.5	533	cTc/cCc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416536	49416536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	150	588	0	ENST00000301067.7:c.16175G>A	p.Arg5392His	p.R5392H	ENST00000301067	NM_003482.3	5392	cGc/cAc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45375037	45375037	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0041037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	36	365	0	ENST00000262160.6:c.806C>G	p.Ser269Ter	p.S269*	ENST00000262160	NM_005901.5	269	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0041053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	462	588	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-	rs397517086		P-0041053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	223	643	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894898	101894898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	32	240	0	ENST00000374994.4:c.451C>A	p.Arg151Ser	p.R151S	ENST00000374994	NM_004612.2	151	Cgc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0041057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	67	751	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0041057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	28	264	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
EED	8726	MSKCC	GRCh37	11	85956278	85956278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	18	202	0	ENST00000263360.6:c.7G>A	p.Glu3Lys	p.E3K	ENST00000263360	NM_003797.3	3	Gag/Aag																																																																														
CYLD	1540	MSKCC	GRCh37	16	50830261	50830261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	56	385	0	ENST00000398568.2:c.2704C>T	p.Gln902Ter	p.Q902*	ENST00000398568	NM_001042412.1	902	Caa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0041057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	44	405	0	ENST00000304494.5:c.150+1G>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0041057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	44	405	0	ENST00000304494.5:c.150+1G>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427912	49427912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	68	600	0	ENST00000301067.7:c.10678G>A	p.Asp3560Asn	p.D3560N	ENST00000301067	NM_003482.3	3560	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445944	49445944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	76	1012	1	ENST00000301067.7:c.1522G>A	p.Glu508Lys	p.E508K	ENST00000301067	NM_003482.3	508	Gaa/Aaa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719535	61719535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	29	434	0	ENST00000401558.2:c.1648C>G	p.Gln550Glu	p.Q550E	ENST00000401558	NM_003400.3	550	Caa/Gaa																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045649	26045649	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	16	200	0	ENST00000540144.1:c.11C>G	p.Thr4Arg	p.T4R	ENST00000540144	NM_003531.2	4	aCg/aGg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487891	56487891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759562930		P-0041074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	111	596	1	ENST00000267101.3:c.1622G>A	p.Arg541Gln	p.R541Q	ENST00000267101	NM_001982.3	541	cGa/cAa																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62323153	62323155	+	inframe_deletion,NMD_transcript_variant	In_Frame_Del	DEL	GAG	GAG	-			P-0041074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	74	628	0	ENST00000482936.1:c.2619_2621del	p.Gly874del	p.G874del	ENST00000482936		872	cGAGga/cga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0041206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	75	479	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038828	47038828	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	233	443	0	ENST00000329236.7:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000329236	NM_001204466.1	202	Cag/Tag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18443910	18443910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	17	353	1	ENST00000266497.5:c.883G>A	p.Asp295Asn	p.D295N	ENST00000266497		295	Gat/Aat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164750	47164751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	119	364	0	ENST00000409792.3:c.1375dup	p.Ser459PhefsTer2	p.S459Ffs*2	ENST00000409792	NM_014159.6	459	tct/tTct																																																																														
MED12	9968	MSKCC	GRCh37	X	70356124	70356153	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGCAGGGTCTACAGGTTTCCACCAAACA	GGAGCAGGGTCTACAGGTTTCCACCAAACA	-			P-0041206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	149	400	0	ENST00000374080.3:c.5026-6_5049del		p.X1676_splice	ENST00000374080		1676																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0041215-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	30	679	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
MITF	4286	MSKCC	GRCh37	3	69928340	69928340	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	43	426	0	ENST00000352241.4:c.160A>G	p.Thr54Ala	p.T54A	ENST00000352241	NM_198159.2	54	Aca/Gca																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189389	56189389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	47	544	0	ENST00000399503.3:c.4421C>G	p.Pro1474Arg	p.P1474R	ENST00000399503	NM_005921.1	1474	cCt/cGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0041247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	177	485	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	206	666	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	49027249	49027249	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0041247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	33	336	0	ENST00000267163.4:c.1814+2T>C		p.X605_splice	ENST00000267163	NM_000321.2	605																																																																															
APC	324	MSKCC	GRCh37	5	112179531	112179531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774747249		P-0041247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	44	367	0	ENST00000257430.4:c.8240C>T	p.Pro2747Leu	p.P2747L	ENST00000257430	NM_000038.5	2747	cCt/cTt																																																																														
PGR	5241	MSKCC	GRCh37	11	100998393	100998394	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	34	128	1	ENST00000325455.5:c.1408_1409delinsAA	p.Pro470Asn	p.P470N	ENST00000325455	NM_001202474.3	470	CCc/AAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578522	7578522	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	183	709	0	ENST00000269305.4:c.408A>T	p.Gln136His	p.Q136H	ENST00000269305	NM_001126112.2	136	caA/caT																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266748	18266748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs929809973		P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	47	463	0	ENST00000222254.8:c.59C>T	p.Pro20Leu	p.P20L	ENST00000222254	NM_005027.3	20	cCg/cTg																																																																														
AKT2	208	MSKCC	GRCh37	19	40762959	40762959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs387906659		P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	126	459	0	ENST00000392038.2:c.49G>A	p.Glu17Lys	p.E17K	ENST00000392038	NM_001626.4	17	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951962	178951962	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	35	452	0	ENST00000263967.3:c.3017T>G	p.Leu1006Arg	p.L1006R	ENST00000263967	NM_006218.2	1006	cTt/cGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55565871	55565871	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767174569		P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	30	464	1	ENST00000288135.5:c.695C>T	p.Thr232Met	p.T232M	ENST00000288135	NM_000222.2	232	aCg/aTg																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997760	149997760	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	198	428	0	ENST00000253339.5:c.2707C>T	p.Gln903Ter	p.Q903*	ENST00000253339		903	Cag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76938361	76938361	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	24	550	0	ENST00000373344.5:c.2387A>G	p.Lys796Arg	p.K796R	ENST00000373344	NM_000489.3	796	aAa/aGa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938763	76938763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	17	571	0	ENST00000373344.5:c.1985C>A	p.Thr662Lys	p.T662K	ENST00000373344	NM_000489.3	662	aCa/aAa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78414967	78414967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	74	504	0	ENST00000370768.2:c.1799C>A	p.Pro600Gln	p.P600Q	ENST00000370768	NM_003902.3	600	cCg/cAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914604	32914604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778123		P-0041282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	118	688	0	ENST00000380152.3:c.6112C>T	p.His2038Tyr	p.H2038Y	ENST00000380152		2038	Cat/Tat																																																																														
VHL	7428	MSKCC	GRCh37	3	10191525	10191528	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0041282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	90	586	0	ENST00000256474.2:c.518_521del	p.Glu173ValfsTer28	p.E173Vfs*28	ENST00000256474	NM_000551.3	173	gAGAAt/gt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534299	187534299	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	95	680	0	ENST00000441802.2:c.9427C>G	p.Leu3143Val	p.L3143V	ENST00000441802	NM_005245.3	3143	Ctg/Gtg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913485		P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	140	877	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1035001455		P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	150	699	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928935	44928935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	93	578	1	ENST00000377967.4:c.2035C>T	p.Gln679Ter	p.Q679*	ENST00000377967	NM_021140.2	679	Cag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278114	41278114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	61	553	0	ENST00000349496.5:c.1990G>A	p.Glu664Lys	p.E664K	ENST00000349496	NM_001904.3	664	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100115	27100115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	106	751	0	ENST00000324856.7:c.3914del	p.Pro1305HisfsTer176	p.P1305Hfs*176	ENST00000324856	NM_006015.4	1304	gCc/gc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342573	118342573	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	64	373	0	ENST00000534358.1:c.699C>G	p.Ile233Met	p.I233M	ENST00000534358	NM_005933.3	233	atC/atG																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342821	118342821	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	48	437	0	ENST00000534358.1:c.947C>A	p.Ser316Ter	p.S316*	ENST00000534358	NM_005933.3	316	tCg/tAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343925	118343925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782402408		P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	63	497	0	ENST00000534358.1:c.2051C>T	p.Ser684Phe	p.S684F	ENST00000534358	NM_005933.3	684	tCt/tTt																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281774	49281774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	293	831	0	ENST00000282018.3:c.821G>A	p.Trp274Ter	p.W274*	ENST00000282018	NM_020377.2	274	tGg/tAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830776	3830776	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	81	610	0	ENST00000262367.5:c.1780G>T	p.Glu594Ter	p.E594*	ENST00000262367	NM_004380.2	594	Gaa/Taa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40860003	40860003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	84	764	1	ENST00000428826.2:c.1633G>T	p.Glu545Ter	p.E545*	ENST00000428826		545	Gag/Tag																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29092935	29092935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	96	683	1	ENST00000328354.6:c.1049C>T	p.Pro350Leu	p.P350L	ENST00000328354	NM_007194.3	350	cCa/cTa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278129	41278129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	66	554	0	ENST00000349496.5:c.2005G>A	p.Asp669Asn	p.D669N	ENST00000349496	NM_001904.3	669	Gat/Aat																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933651	49933651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	105	980	0	ENST00000296474.3:c.2626G>C	p.Glu876Gln	p.E876Q	ENST00000296474	NM_002447.2	876	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0041286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	72	440	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0041286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	46	427	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	138	664	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729609	41729609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	120	627	0	ENST00000242208.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000242208	NM_002192.2	307	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175491	112175492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0041286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	79	447	0	ENST00000257430.4:c.4201_4202dup	p.Ala1402LeufsTer14	p.A1402Lfs*14	ENST00000257430	NM_000038.5	1400	-/AT																																																																														
PREX2	80243	MSKCC	GRCh37	8	69012043	69012043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	99	610	0	ENST00000288368.4:c.2680G>A	p.Glu894Lys	p.E894K	ENST00000288368	NM_024870.2	894	Gaa/Aaa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850696	63850696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	54	372	0	ENST00000279873.7:c.1474G>A	p.Asp492Asn	p.D492N	ENST00000279873	NM_032199.2	492	Gac/Aac																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112940005	112940005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	80	628	1	ENST00000351677.2:c.1657A>G	p.Thr553Ala	p.T553A	ENST00000351677	NM_002834.3	553	Acg/Gcg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432155	121432155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	59	656	0	ENST00000257555.6:c.902C>G	p.Ala301Gly	p.A301G	ENST00000257555		301	gCt/gGt																																																																														
MGA	23269	MSKCC	GRCh37	15	41988374	41988374	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	67	480	0	ENST00000219905.7:c.1166A>G	p.Tyr389Cys	p.Y389C	ENST00000219905	NM_001164273.1	389	tAt/tGt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396746	396746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	68	693	0	ENST00000262320.3:c.280G>T	p.Asp94Tyr	p.D94Y	ENST00000262320	NM_003502.3	94	Gat/Tat																																																																														
NF1	4763	MSKCC	GRCh37	17	29548867	29548867	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	67	355	0	ENST00000358273.4:c.1642-1G>T		p.X548_splice	ENST00000358273	NM_001042492.2	548																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0041304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	68	467	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480469	89480469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	47	336	0	ENST00000336596.2:c.2306G>T	p.Arg769Leu	p.R769L	ENST00000336596	NM_005233.5	769	cGt/cTt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508782	106508782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	76	550	0	ENST00000359195.3:c.776T>C	p.Met259Thr	p.M259T	ENST00000359195	NM_002649.2	259	aTg/aCg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041046	47041046	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0041304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	73	376	0	ENST00000329236.7:c.1341+1G>A		p.X447_splice	ENST00000329236	NM_001204466.1	447																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	827	644	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48916733	48916733	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	64	287	0	ENST00000267163.4:c.265-2A>T		p.X89_splice	ENST00000267163	NM_000321.2	89																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2491274	2491274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	363	578	0	ENST00000355716.4:c.317G>T	p.Arg106Leu	p.R106L	ENST00000355716	NM_003820.2	106	cGc/cTc																																																																														
RET	5979	MSKCC	GRCh37	10	43597871	43597871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	772	731	0	ENST00000355710.3:c.419C>T	p.Pro140Leu	p.P140L	ENST00000355710	NM_020975.4	140	cCa/cTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425376	49425376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	683	666	0	ENST00000301067.7:c.13112del	p.Ser4371ThrfsTer13	p.S4371Tfs*13	ENST00000301067	NM_003482.3	4371	aGc/ac																																																																														
RB1	5925	MSKCC	GRCh37	13	48881472	48881472	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	56	237	0	ENST00000267163.4:c.194A>C	p.Lys65Thr	p.K65T	ENST00000267163	NM_000321.2	65	aAg/aCg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527711	103527711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	189	276	0	ENST00000355739.4:c.3019G>A	p.Ala1007Thr	p.A1007T	ENST00000355739	NM_000123.3	1007	Gct/Act																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112528	2112528	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	583	697	3	ENST00000219476.3:c.1288A>G	p.Arg430Gly	p.R430G	ENST00000219476	NM_000548.3	430	Aga/Gga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858360	9858360	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	197	397	0	ENST00000330684.3:c.3041G>T	p.Trp1014Leu	p.W1014L	ENST00000330684	NM_001134407.1	1014	tGg/tTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68857418	68857418	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs550612843		P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	236	473	0	ENST00000261769.5:c.2053G>A	p.Val685Met	p.V685M	ENST00000261769	NM_004360.3	685	Gtg/Atg																																																																														
YES1	7525	MSKCC	GRCh37	18	724594	724594	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	171	439	0	ENST00000314574.4:c.1462G>T	p.Gly488Ter	p.G488*	ENST00000314574	NM_005433.3	488	Gga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5240267	5240268	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	379	715	2	ENST00000357368.4:c.1646_1647delinsTT	p.Arg549Leu	p.R549L	ENST00000357368	NM_002850.3	549	cGG/cTT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288430	15288430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	90	479	0	ENST00000263388.2:c.4309T>C	p.Phe1437Leu	p.F1437L	ENST00000263388	NM_000435.2	1437	Ttc/Ctc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965229	25965229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	179	494	0	ENST00000435504.4:c.3977G>C	p.Ser1326Thr	p.S1326T	ENST00000435504		1326	aGc/aCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535420	187535420	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	266	402	0	ENST00000441802.2:c.9154A>T	p.Ile3052Phe	p.I3052F	ENST00000441802	NM_005245.3	3052	Atc/Ttc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294684	1294685	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	159	376	0	ENST00000310581.5:c.316_317delinsTT	p.Gly106Leu	p.G106L	ENST00000310581	NM_198253.2	106	GGg/TTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417503	139417503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	655	712	0	ENST00000277541.6:c.541G>T	p.Glu181Ter	p.E181*	ENST00000277541	NM_017617.3	181	Gag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66765473	66765473	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	311	698	0	ENST00000374690.3:c.485C>G	p.Ser162Cys	p.S162C	ENST00000374690	NM_000044.3	162	tCc/tGc																																																																														
MED12	9968	MSKCC	GRCh37	X	70348487	70348487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	161	435	1	ENST00000374080.3:c.3394G>T	p.Val1132Phe	p.V1132F	ENST00000374080		1132	Gtt/Ttt																																																																														
MED12	9968	MSKCC	GRCh37	X	70356131	70356131	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	319	562	0	ENST00000374080.3:c.5026G>T	p.Gly1676Cys	p.G1676C	ENST00000374080		1676	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	48	491	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519922		P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	82	544	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs387907272		P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	27	270	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992223	11992223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	27	331	0	ENST00000396373.4:c.313C>G	p.Arg105Gly	p.R105G	ENST00000396373	NM_001987.4	105	Cga/Gga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152050	11152053	+	frameshift_variant	Frame_Shift_Del	DEL	GCAA	GCAA	-			P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	77	541	0	ENST00000344626.4:c.4240_4243del	p.Lys1414GlufsTer48	p.K1414Efs*48	ENST00000344626	NM_003072.3	1413	cGCAAg/cg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216187	36216187	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs750568281		P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	108	626	0	ENST00000222270.7:c.3595G>T	p.Gly1199Cys	p.G1199C	ENST00000222270	NM_014727.1	1199	Ggc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812299	212812299	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	21	273	0	ENST00000342788.4:c.277C>G	p.Gln93Glu	p.Q93E	ENST00000342788	NM_005235.2	93	Cag/Gag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188823	32188823	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs8192585		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	121	688	0	ENST00000375023.3:c.731C>T	p.Ser244Leu	p.S244L	ENST00000375023	NM_004557.3	244	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	20	628	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	130	359	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103513972	103513972	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61749896		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	65	279	0	ENST00000355739.4:c.788G>A	p.Arg263Gln	p.R263Q	ENST00000355739	NM_000123.3	263	cGa/cAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522598	157522598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	157	520	0	ENST00000346085.5:c.4870C>T	p.Arg1624Ter	p.R1624*	ENST00000346085	NM_020732.3	1624	Cga/Tga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519884		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	88	359	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	88	314	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764400127		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	59	368	1	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256942	16256942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	101	464	0	ENST00000375759.3:c.4207C>T	p.Arg1403Ter	p.R1403*	ENST00000375759	NM_015001.2	1403	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720870	89720870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	87	207	0	ENST00000371953.3:c.1021T>G	p.Phe341Val	p.F341V	ENST00000371953	NM_000314.4	341	Ttt/Gtt																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519943		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	135	478	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916248	9916248	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397518472		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	55	329	2	ENST00000330684.3:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000330684	NM_001134407.1	681	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857197	9857197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866121846		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	72	454	0	ENST00000330684.3:c.4204C>T	p.Arg1402Trp	p.R1402W	ENST00000330684	NM_001134407.1	1402	Cgg/Tgg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243800978	243800978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	64	297	0	ENST00000263826.5:c.496C>T	p.Arg166Ter	p.R166*	ENST00000263826	NM_005465.4	166	Cga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs865931787		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	80	501	0	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509723	106509723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	87	438	0	ENST00000359195.3:c.1717G>T	p.Glu573Ter	p.E573*	ENST00000359195	NM_002649.2	573	Gaa/Taa																																																																														
IGF1	3479	MSKCC	GRCh37	12	102874103	102874103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	36	154	0	ENST00000307046.8:c.57C>A	p.Phe19Leu	p.F19L	ENST00000307046	NM_001111285.1	19	ttC/ttA																																																																														
CCNE1	898	MSKCC	GRCh37	19	30311662	30311662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	80	277	0	ENST00000262643.3:c.516C>A	p.Phe172Leu	p.F172L	ENST00000262643	NM_001238.2	172	ttC/ttA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	52	333	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
CUL3	8452	MSKCC	GRCh37	2	225342967	225342967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	68	337	0	ENST00000264414.4:c.2125C>T	p.Arg709Trp	p.R709W	ENST00000264414	NM_003590.4	709	Cgg/Tgg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120219	94120219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs2278106		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	31	179	0	ENST00000369303.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000369303	NM_004440.3	278	Ccc/Tcc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10257072	10257072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	120	588	1	ENST00000340748.4:c.2801G>A	p.Arg934Gln	p.R934Q	ENST00000340748		934	cGa/cAa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430668	80430668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	65	307	0	ENST00000286548.4:c.340C>T	p.Arg114Ter	p.R114*	ENST00000286548	NM_002072.3	114	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142281484	142281484	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	107	413	0	ENST00000350721.4:c.760G>T	p.Glu254Ter	p.E254*	ENST00000350721	NM_001184.3	254	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs752654519		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	62	221	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202457		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	49	236	1	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068387	26068387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	64	221	0	ENST00000435504.4:c.103C>A	p.Leu35Ile	p.L35I	ENST00000435504		35	Ctt/Att																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103510743	103510743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	20	229	0	ENST00000355739.4:c.647G>T	p.Arg216Ile	p.R216I	ENST00000355739	NM_000123.3	216	aGa/aTa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609467	81609467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	75	367	1	ENST00000298171.2:c.1065C>A	p.Phe355Leu	p.F355L	ENST00000298171	NM_000369.2	355	ttC/ttA																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485115	57485115	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754097818		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	54	352	1	ENST00000371085.3:c.949C>T	p.Arg317Cys	p.R317C	ENST00000371085	NM_000516.4	317	Cgc/Tgc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582439	119582439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775606264		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	43	179	0	ENST00000316626.5:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000316626		321	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674233	86674233	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1463885690		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	43	229	0	ENST00000274376.6:c.2365C>T	p.Arg789Ter	p.R789*	ENST00000274376	NM_002890.2	789	Cga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522568	106522568	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs754441790		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	68	236	0	ENST00000359195.3:c.2545C>T	p.Arg849Ter	p.R849*	ENST00000359195	NM_002649.2	849	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412094	63412094	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374751715		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	145	774	0	ENST00000330258.3:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000330258	NM_152424.3	358	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854560		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	80	326	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274121	10274121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	112	577	0	ENST00000330684.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000330684	NM_001134407.1	50	Gaa/Aaa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	62	171	0	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99203950	99203950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755469992		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	41	226	0	ENST00000074304.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000074304	NM_001134224.1	938	cGa/cAa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	126	614	0	ENST00000267101.3:c.273G>T	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152033	11152033	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1384070535		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	117	493	0	ENST00000344626.4:c.4221G>T	p.Lys1407Asn	p.K1407N	ENST00000344626	NM_003072.3	1407	aaG/aaT																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670234	134670234	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764139128		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	22	435	1	ENST00000398015.3:c.145G>A	p.Asp49Asn	p.D49N	ENST00000398015	NM_004441.4	49	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832265	72832265	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267604632		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	63	430	0	ENST00000268489.5:c.4316G>A	p.Arg1439Gln	p.R1439Q	ENST00000268489	NM_006885.3	1439	cGa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937393	76937393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	52	202	0	ENST00000373344.5:c.3355G>T	p.Glu1119Ter	p.E1119*	ENST00000373344	NM_000489.3	1119	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541679	187541679	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185406112		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	56	271	0	ENST00000441802.2:c.6061C>T	p.Arg2021Cys	p.R2021C	ENST00000441802	NM_005245.3	2021	Cgc/Tgc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390072	89390072	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765502894		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	35	208	0	ENST00000336596.2:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000336596	NM_005233.5	274	cGa/cAa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101909998	101909998	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	39	156	0	ENST00000374994.4:c.1318G>T	p.Glu440Ter	p.E440*	ENST00000374994	NM_004612.2	440	Gaa/Taa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243800930	243800930	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	47	213	0	ENST00000263826.5:c.544G>T	p.Glu182Ter	p.E182*	ENST00000263826	NM_005465.4	182	Gaa/Taa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412937	63412937	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201650985		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	143	741	1	ENST00000330258.3:c.230G>A	p.Arg77Gln	p.R77Q	ENST00000330258	NM_152424.3	77	cGg/cAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483945	88483945	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1313486936		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	110	614	0	ENST00000360948.2:c.1625G>A	p.Arg542Gln	p.R542Q	ENST00000360948	NM_001012338.2	542	cGa/cAa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324496	31324496	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs2308559		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	20	342	2	ENST00000412585.2:c.312C>A	p.Asn104Lys	p.N104K	ENST00000412585	NM_005514.6	104	aaC/aaA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139865	55139865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	69	379	0	ENST00000257290.5:c.1526C>T	p.Ala509Val	p.A509V	ENST00000257290	NM_006206.4	509	gCt/gTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622241	117622241	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs148104006		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	23	282	0	ENST00000368508.3:c.6629G>T	p.Arg2210Ile	p.R2210I	ENST00000368508	NM_002944.2	2210	aGa/aTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906766	32906766	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41293475		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	100	505	0	ENST00000380152.3:c.1151C>T	p.Ser384Phe	p.S384F	ENST00000380152		384	tCc/tTc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80021291	80021291	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs539295465		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	68	266	1	ENST00000265081.6:c.1360C>T	p.Arg454Ter	p.R454*	ENST00000265081	NM_002439.4	454	Cga/Tga																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588810	69588810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	121	755	0	ENST00000168712.1:c.426G>T	p.Lys142Asn	p.K142N	ENST00000168712	NM_002007.2	142	aaG/aaT																																																																														
CASP8	841	MSKCC	GRCh37	2	202131421	202131421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	72	363	0	ENST00000358485.4:c.389G>T	p.Arg130Ile	p.R130I	ENST00000358485	NM_001080125.1	130	aGa/aTa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663425	227663425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	48	329	0	ENST00000305123.5:c.30C>A	p.Phe10Leu	p.F10L	ENST00000305123	NM_005544.2	10	ttC/ttA																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46276031	46276031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146235035		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	109	487	0	ENST00000371998.3:c.3467G>A	p.Arg1156Gln	p.R1156Q	ENST00000371998		1156	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945021	151945021	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs756918375		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	11	60	0	ENST00000262189.6:c.2498G>T	p.Arg833Ile	p.R833I	ENST00000262189	NM_170606.2	833	aGa/aTa																																																																														
MET	4233	MSKCC	GRCh37	7	116371771	116371771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	71	329	0	ENST00000397752.3:c.1250G>A	p.Arg417Gln	p.R417Q	ENST00000397752	NM_000245.2	417	cGa/cAa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864117	57864117	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749783306		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	86	506	0	ENST00000228682.2:c.1594C>T	p.Arg532Cys	p.R532C	ENST00000228682	NM_005269.2	532	Cgc/Tgc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230538	46230538	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	43	287	0	ENST00000334344.6:c.787G>T	p.Glu263Ter	p.E263*	ENST00000334344	NM_152641.2	263	Gaa/Taa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060728	38060728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	151	784	0	ENST00000250448.2:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000250448	NM_004496.3	421	Gaa/Aaa																																																																														
RARA	5914	MSKCC	GRCh37	17	38512334	38512334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	100	582	0	ENST00000254066.5:c.1245G>T	p.Glu415Asp	p.E415D	ENST00000254066	NM_000964.3	415	gaG/gaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105688	27105688	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	66	346	0	ENST00000324856.7:c.5299G>T	p.Glu1767Ter	p.E1767*	ENST00000324856	NM_006015.4	1767	Gaa/Taa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31394020	31394020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	78	238	0	ENST00000328111.2:c.2307G>T	p.Lys769Asn	p.K769N	ENST00000328111	NM_006892.3	769	aaG/aaT																																																																														
FANCC	2176	MSKCC	GRCh37	9	98003008	98003008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	63	159	0	ENST00000289081.3:c.268C>A	p.Leu90Ile	p.L90I	ENST00000289081	NM_000136.2	90	Cta/Ata																																																																														
CASP8	841	MSKCC	GRCh37	2	202136246	202136246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	68	301	0	ENST00000358485.4:c.490C>T	p.Leu164Phe	p.L164F	ENST00000358485	NM_001080125.1	164	Ctc/Ttc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518429	8518429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs995119754		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	38	169	0	ENST00000356435.5:c.962C>T	p.Ala321Val	p.A321V	ENST00000356435		321	gCc/gTc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933047	39933047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	125	652	1	ENST00000378444.4:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000378444	NM_001123385.1	518	Gaa/Aaa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522657	67522657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	36	251	0	ENST00000274335.5:c.154G>T	p.Glu52Ter	p.E52*	ENST00000274335		52	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692815	89692815	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	68	164	0	ENST00000371953.3:c.299T>G	p.Leu100Arg	p.L100R	ENST00000371953	NM_000314.4	100	cTt/cGt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654607	67654607	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	106	363	0	ENST00000264010.4:c.1094A>C	p.Lys365Thr	p.K365T	ENST00000264010	NM_006565.3	365	aAa/aCa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141557714	141557714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	99	620	0	ENST00000220592.5:c.1601G>A	p.Arg534His	p.R534H	ENST00000220592	NM_012154.3	534	cGc/cAc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056108	26056108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	111	353	0	ENST00000343677.2:c.549G>T	p.Lys183Asn	p.K183N	ENST00000343677	NM_005319.3	183	aaG/aaT																																																																														
ERG	2078	MSKCC	GRCh37	21	39772513	39772513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	67	427	1	ENST00000288319.7:c.728G>T	p.Arg243Ile	p.R243I	ENST00000288319	NM_182918.3	243	aGa/aTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562133	176562133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	88	406	0	ENST00000439151.2:c.29G>T	p.Arg10Ile	p.R10I	ENST00000439151	NM_022455.4	10	aGa/aTa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29106017	29106017	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs749963436		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	59	178	0	ENST00000328354.6:c.823G>T	p.Glu275Ter	p.E275*	ENST00000328354	NM_007194.3	275	Gaa/Taa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94917635	94917635	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	94	326	0	ENST00000536441.1:c.886G>T	p.Glu296Ter	p.E296*	ENST00000536441	NM_144665.3	296	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910767	32910767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	67	268	0	ENST00000380152.3:c.2275C>A	p.Leu759Ile	p.L759I	ENST00000380152		759	Ctt/Att																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912136	127912136	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	61	208	0	ENST00000373547.4:c.734A>C	p.Lys245Thr	p.K245T	ENST00000373547	NM_002721.4	245	aAa/aCa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346314	73346314	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	46	183	0	ENST00000377767.4:c.1486G>T	p.Glu496Ter	p.E496*	ENST00000377767	NM_014953.3	496	Gaa/Taa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40468866	40468866	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	80	348	0	ENST00000264657.5:c.2198C>A	p.Ser733Ter	p.S733*	ENST00000264657	NM_139276.2	733	tCa/tAa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608279	28608279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	82	362	1	ENST00000241453.7:c.1777G>T	p.Asp593Tyr	p.D593Y	ENST00000241453	NM_004119.2	593	Gat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906894	32906894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	58	316	0	ENST00000380152.3:c.1279G>T	p.Asp427Tyr	p.D427Y	ENST00000380152		427	Gac/Tac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53253955	53253955	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	100	577	0	ENST00000375401.3:c.117G>T	p.Glu39Asp	p.E39D	ENST00000375401	NM_004187.3	39	gaG/gaT																																																																														
CDC73	79577	MSKCC	GRCh37	1	193107275	193107275	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	31	204	0	ENST00000367435.3:c.484G>T	p.Glu162Ter	p.E162*	ENST00000367435	NM_024529.4	162	Gaa/Taa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798781	135798781	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1214441043		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	36	225	0	ENST00000298552.3:c.462C>A	p.Phe154Leu	p.F154L	ENST00000298552	NM_001162426.1	154	ttC/ttA																																																																														
PMS1	5378	MSKCC	GRCh37	2	190738308	190738308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	77	190	0	ENST00000441310.2:c.2560C>A	p.Leu854Ile	p.L854I	ENST00000441310	NM_000534.4	854	Ctt/Att																																																																														
MTOR	2475	MSKCC	GRCh37	1	11307699	11307699	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1226783220		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	71	402	0	ENST00000361445.4:c.1208G>A	p.Arg403Gln	p.R403Q	ENST00000361445	NM_004958.3	403	cGa/cAa																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39305334	39305334	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	100	425	0	ENST00000373001.3:c.1091A>C	p.His364Pro	p.H364P	ENST00000373001	NM_022157.3	364	cAt/cCt																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72241878	72241878	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	44	228	0	ENST00000357731.5:c.512C>A	p.Ser171Tyr	p.S171Y	ENST00000357731	NM_173808.2	171	tCt/tAt																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166202	118166202	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	53	324	0	ENST00000369448.3:c.712G>T	p.Glu238Ter	p.E238*	ENST00000369448	NM_017709.3	238	Gaa/Taa																																																																														
NUF2	83540	MSKCC	GRCh37	1	163313606	163313606	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	37	112	0	ENST00000271452.3:c.753A>C	p.Leu251Phe	p.L251F	ENST00000271452	NM_145697.2	251	ttA/ttC																																																																														
TET1	80312	MSKCC	GRCh37	10	70332221	70332221	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1224328336		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	61	306	0	ENST00000373644.4:c.126G>T	p.Lys42Asn	p.K42N	ENST00000373644	NM_030625.2	42	aaG/aaT																																																																														
TET1	80312	MSKCC	GRCh37	10	70441196	70441196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	81	289	0	ENST00000373644.4:c.4865G>T	p.Arg1622Leu	p.R1622L	ENST00000373644	NM_030625.2	1622	cGa/cTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692920	89692920	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs370795352		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	97	345	0	ENST00000371953.3:c.404T>C	p.Ile135Thr	p.I135T	ENST00000371953	NM_000314.4	135	aTa/aCa																																																																														
PAK1	5058	MSKCC	GRCh37	11	77043862	77043862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	118	608	1	ENST00000356341.3:c.1464G>T	p.Glu488Asp	p.E488D	ENST00000356341	NM_002576.4	488	gaG/gaT																																																																														
MRE11A	0	MSKCC	GRCh37	11	94153324	94153324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	74	145	0	ENST00000323929.3:c.2094G>T	p.Met698Ile	p.M698I	ENST00000323929	NM_005591.3	698	atG/atT																																																																														
MRE11A	0	MSKCC	GRCh37	11	94170355	94170355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	58	145	0	ENST00000323929.3:c.1914G>T	p.Lys638Asn	p.K638N	ENST00000323929	NM_005591.3	638	aaG/aaT																																																																														
ATM	472	MSKCC	GRCh37	11	108155196	108155196	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	40	263	0	ENST00000278616.4:c.3989A>C	p.Lys1330Thr	p.K1330T	ENST00000278616	NM_000051.3	1330	aAa/aCa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343505	118343505	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	63	310	0	ENST00000534358.1:c.1631A>C	p.Lys544Thr	p.K544T	ENST00000534358	NM_005933.3	544	aAa/aCa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374794	118374794	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	53	271	0	ENST00000534358.1:c.8187T>G	p.Ser2729Arg	p.S2729R	ENST00000534358	NM_005933.3	2729	agT/agG																																																																														
KDM5A	5927	MSKCC	GRCh37	12	394656	394656	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	71	444	0	ENST00000399788.2:c.5039A>C	p.Lys1680Thr	p.K1680T	ENST00000399788	NM_001042603.1	1680	aAa/aCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426198	49426198	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	105	663	0	ENST00000301067.7:c.12290T>C	p.Leu4097Pro	p.L4097P	ENST00000301067	NM_003482.3	4097	cTt/cCt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445656	49445656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	156	918	1	ENST00000301067.7:c.1810G>A	p.Glu604Lys	p.E604K	ENST00000301067	NM_003482.3	604	Gaa/Aaa																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484082	50484082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	132	529	0	ENST00000394963.4:c.932C>G	p.Thr311Ser	p.T311S	ENST00000394963	NM_003076.4	311	aCt/aGt																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869449	102869449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	79	416	0	ENST00000307046.8:c.192C>A	p.Phe64Leu	p.F64L	ENST00000307046	NM_001111285.1	64	ttC/ttA																																																																														
POLE	5426	MSKCC	GRCh37	12	133212568	133212568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	104	415	0	ENST00000320574.5:c.5721C>A	p.Phe1907Leu	p.F1907L	ENST00000320574	NM_006231.2	1907	ttC/ttA																																																																														
POLE	5426	MSKCC	GRCh37	12	133218812	133218812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	104	578	1	ENST00000320574.5:c.5124C>A	p.Phe1708Leu	p.F1708L	ENST00000320574	NM_006231.2	1708	ttC/ttA																																																																														
POLE	5426	MSKCC	GRCh37	12	133237712	133237712	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	107	449	0	ENST00000320574.5:c.2903T>C	p.Leu968Pro	p.L968P	ENST00000320574	NM_006231.2	968	cTc/cCc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28903808	28903808	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	91	518	0	ENST00000282397.4:c.2651A>G	p.His884Arg	p.H884R	ENST00000282397	NM_002019.4	884	cAc/cGc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907370	32907370	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs431825285		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	57	248	1	ENST00000380152.3:c.1755G>T	p.Lys585Asn	p.K585N	ENST00000380152		585	aaG/aaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910870	32910870	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	31	236	0	ENST00000380152.3:c.2378A>C	p.Lys793Thr	p.K793T	ENST00000380152		793	aAa/aCa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911058	32911058	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	69	233	0	ENST00000380152.3:c.2566A>C	p.Asn856His	p.N856H	ENST00000380152		856	Aat/Cat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912349	32912349	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	57	176	0	ENST00000380152.3:c.3857A>T	p.Lys1286Ile	p.K1286I	ENST00000380152		1286	aAa/aTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912521	32912521	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	89	242	0	ENST00000380152.3:c.4029A>T	p.Lys1343Asn	p.K1343N	ENST00000380152		1343	aaA/aaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914082	32914082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	51	283	0	ENST00000380152.3:c.5590G>T	p.Asp1864Tyr	p.D1864Y	ENST00000380152		1864	Gac/Tac																																																																														
RB1	5925	MSKCC	GRCh37	13	48916828	48916828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	64	226	0	ENST00000267163.4:c.358C>A	p.Leu120Ile	p.L120I	ENST00000267163	NM_000321.2	120	Cta/Ata																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514971	103514971	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs774961421		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	50	301	0	ENST00000355739.4:c.1472A>C	p.Glu491Ala	p.E491A	ENST00000355739	NM_000123.3	491	gAg/gCg																																																																														
MAX	4149	MSKCC	GRCh37	14	65544673	65544673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	95	549	0	ENST00000358664.4:c.253A>G	p.Ile85Val	p.I85V	ENST00000358664	NM_002382.4	85	Att/Gtt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609343	81609343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	38	248	0	ENST00000298171.2:c.941C>A	p.Ser314Tyr	p.S314Y	ENST00000298171	NM_000369.2	314	tCt/tAt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590878	95590878	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	48	169	0	ENST00000343455.3:c.1031T>G	p.Phe344Cys	p.F344C	ENST00000343455	NM_177438.2	344	tTt/tGt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748846	43748846	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	128	620	0	ENST00000382044.4:c.1960G>T	p.Glu654Ter	p.E654*	ENST00000382044	NM_001141980.1	654	Gaa/Taa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66735671	66735671	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	73	249	0	ENST00000307102.5:c.492A>C	p.Gln164His	p.Q164H	ENST00000307102	NM_002755.3	164	caA/caC																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984844	9984844	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	90	390	2	ENST00000330684.3:c.1121del	p.Lys374ArgfsTer10	p.K374Rfs*10	ENST00000330684	NM_001134407.1	374	aAg/ag																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041966	14041966	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	60	299	0	ENST00000311895.7:c.2513T>G	p.Leu838Arg	p.L838R	ENST00000311895	NM_005236.2	838	cTt/cGt																																																																														
CDH1	999	MSKCC	GRCh37	16	68853187	68853187	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373605261		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	71	398	5	ENST00000261769.5:c.1570C>T	p.Arg524Trp	p.R524W	ENST00000261769	NM_004360.3	524	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831351	72831351	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753503557		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	68	316	0	ENST00000268489.5:c.5230A>G	p.Thr1744Ala	p.T1744A	ENST00000268489	NM_006885.3	1744	Acg/Gcg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990636	7990636	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	111	566	0	ENST00000319144.4:c.125G>T	p.Gly42Val	p.G42V	ENST00000319144	NM_001139.2	42	gGg/gTg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11958217	11958217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	24	196	0	ENST00000353533.5:c.127G>A	p.Ala43Thr	p.A43T	ENST00000353533	NM_003010.3	43	Gca/Aca																																																																														
NF1	4763	MSKCC	GRCh37	17	29508455	29508455	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	69	176	0	ENST00000358273.4:c.602T>G	p.Phe201Cys	p.F201C	ENST00000358273	NM_001042492.2	201	tTt/tGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29550489	29550489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	52	131	0	ENST00000358273.4:c.1749G>T	p.Lys583Asn	p.K583N	ENST00000358273	NM_001042492.2	583	aaG/aaT																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30264368	30264368	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1224696424		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	22	289	0	ENST00000322652.5:c.103A>G	p.Thr35Ala	p.T35A	ENST00000322652	NM_015355.2	35	Acg/Gcg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573424	48573424	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	24	103	0	ENST00000342988.3:c.8A>C	p.Asn3Thr	p.N3T	ENST00000342988	NM_005359.5	3	aAt/aCt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56377230	56377230	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	16	146	0	ENST00000348428.3:c.851A>G	p.His284Arg	p.H284R	ENST00000348428	NM_006785.3	284	cAc/cGc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134218	11134218	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	124	602	0	ENST00000344626.4:c.2884A>G	p.Ile962Val	p.I962V	ENST00000344626	NM_003072.3	962	Att/Gtt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912049	50912049	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200864923		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	120	748	1	ENST00000440232.2:c.1783G>A	p.Asp595Asn	p.D595N	ENST00000440232	NM_002691.3	595	Gac/Aac																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965130	25965130	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	84	444	1	ENST00000435504.4:c.4076C>A	p.Ser1359Ter	p.S1359*	ENST00000435504		1359	tCa/tAa																																																																														
ALK	238	MSKCC	GRCh37	2	29430052	29430052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	81	511	0	ENST00000389048.3:c.3923C>A	p.Ser1308Tyr	p.S1308Y	ENST00000389048	NM_004304.4	1308	tCt/tAt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46583923	46583923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	77	398	0	ENST00000263734.3:c.430C>T	p.Arg144Cys	p.R144C	ENST00000263734	NM_001430.4	144	Cgt/Tgt																																																																														
ACVR1	90	MSKCC	GRCh37	2	158630608	158630608	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	52	191	0	ENST00000263640.3:c.635A>T	p.Glu212Val	p.E212V	ENST00000263640	NM_001105.4	212	gAg/gTg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113291	209113291	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	72	283	0	ENST00000345146.2:c.216A>C	p.Lys72Asn	p.K72N	ENST00000345146	NM_005896.2	72	aaA/aaC																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285282	212285282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	51	304	0	ENST00000342788.4:c.3019C>A	p.Leu1007Ile	p.L1007I	ENST00000342788	NM_005235.2	1007	Ctc/Atc																																																																														
BARD1	580	MSKCC	GRCh37	2	215609799	215609799	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	39	185	0	ENST00000260947.4:c.1895A>C	p.Lys632Thr	p.K632T	ENST00000260947	NM_000465.2	632	aAa/aCa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024873	31024873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	91	472	0	ENST00000375687.4:c.4358G>A	p.Ser1453Asn	p.S1453N	ENST00000375687	NM_015338.5	1453	aGc/aAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40709559	40709559	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	85	375	0	ENST00000373198.4:c.4343T>G	p.Phe1448Cys	p.F1448C	ENST00000373198	NM_133170.3	1448	tTt/tGt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101183	41101183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	82	566	0	ENST00000373198.4:c.1173G>T	p.Gln391His	p.Q391H	ENST00000373198	NM_133170.3	391	caG/caT																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46271045	46271045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	86	416	0	ENST00000371998.3:c.3169C>G	p.Leu1057Val	p.L1057V	ENST00000371998		1057	Ctg/Gtg																																																																														
ERG	2078	MSKCC	GRCh37	21	39775513	39775513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	94	599	0	ENST00000288319.7:c.507C>A	p.Cys169Ter	p.C169*	ENST00000288319	NM_182918.3	169	tgC/tgA																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458392	12458392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	104	550	0	ENST00000287820.6:c.1009C>A	p.Leu337Ile	p.L337I	ENST00000287820	NM_015869.4	337	Ctt/Att																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164312	47164312	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1382756465		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	57	181	0	ENST00000409792.3:c.1814A>C	p.Lys605Thr	p.K605T	ENST00000409792	NM_014159.6	605	aAa/aCa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52676006	52676006	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	80	366	1	ENST00000394830.3:c.1051T>C	p.Tyr351His	p.Y351H	ENST00000394830	NM_018313.4	351	Tat/Cat																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134977865	134977865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	56	291	0	ENST00000398015.3:c.2858G>A	p.Arg953Lys	p.R953K	ENST00000398015	NM_004441.4	953	aGa/aAa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138376582	138376582	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs763059581		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	71	355	0	ENST00000289153.2:c.2892C>A	p.Phe964Leu	p.F964L	ENST00000289153	NM_006219.2	964	ttC/ttA																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138423326	138423326	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs769614863		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	54	272	0	ENST00000289153.2:c.1540A>C	p.Lys514Gln	p.K514Q	ENST00000289153	NM_006219.2	514	Aag/Cag																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433370	138433370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	69	262	0	ENST00000289153.2:c.1242G>T	p.Lys414Asn	p.K414N	ENST00000289153	NM_006219.2	414	aaG/aaT																																																																														
ATR	545	MSKCC	GRCh37	3	142224124	142224124	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	19	222	0	ENST00000350721.4:c.5053G>T	p.Glu1685Ter	p.E1685*	ENST00000350721	NM_001184.3	1685	Gaa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142272144	142272144	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	131	286	0	ENST00000350721.4:c.2730A>C	p.Glu910Asp	p.E910D	ENST00000350721	NM_001184.3	910	gaA/gaC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951989	178951989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	57	267	0	ENST00000263967.3:c.3044C>A	p.Ser1015Tyr	p.S1015Y	ENST00000263967	NM_006218.2	1015	tCt/tAt																																																																														
BCL6	604	MSKCC	GRCh37	3	187444685	187444685	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	32	276	0	ENST00000232014.4:c.1542G>T	p.Glu514Asp	p.E514D	ENST00000232014	NM_001130845.1	514	gaG/gaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55955581	55955581	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	67	301	0	ENST00000263923.4:c.3364G>T	p.Gly1122Ter	p.G1122*	ENST00000263923	NM_002253.2	1122	Gga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467823	66467823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	41	218	0	ENST00000273854.3:c.446A>G	p.Glu149Gly	p.E149G	ENST00000273854	NM_004439.5	149	gAa/gGa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157710	106157710	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs767929296		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	39	185	0	ENST00000380013.4:c.2611A>T	p.Asn871Tyr	p.N871Y	ENST00000380013	NM_001127208.2	871	Aat/Tat																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007409	143007409	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	39	150	0	ENST00000262992.4:c.2375A>C	p.Tyr792Ser	p.Y792S	ENST00000262992	NM_001101669.1	792	tAt/tCt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143094808	143094808	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	49	208	0	ENST00000262992.4:c.1336T>G	p.Ser446Ala	p.S446A	ENST00000262992	NM_001101669.1	446	Tct/Gct																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271223	153271223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	46	146	0	ENST00000281708.4:c.555G>T	p.Lys185Asn	p.K185N	ENST00000281708	NM_033632.3	185	aaG/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521160	187521160	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	79	509	0	ENST00000441802.2:c.11995A>C	p.Ile3999Leu	p.I3999L	ENST00000441802	NM_005245.3	3999	Atc/Ctc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31437392	31437392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	90	412	0	ENST00000344624.3:c.2896G>T	p.Glu966Ter	p.E966*	ENST00000344624		966	Gaa/Taa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31468109	31468109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	110	500	0	ENST00000344624.3:c.2303C>A	p.Thr768Asn	p.T768N	ENST00000344624		768	aCt/aAt																																																																														
MSH3	4437	MSKCC	GRCh37	5	80088568	80088568	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	55	183	0	ENST00000265081.6:c.2560G>T	p.Glu854Ter	p.E854*	ENST00000265081	NM_002439.4	854	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175493	112175493	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	40	268	0	ENST00000257430.4:c.4202T>A	p.Ile1401Asn	p.I1401N	ENST00000257430	NM_000038.5	1401	aTt/aAt																																																																														
APC	324	MSKCC	GRCh37	5	112178325	112178325	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	67	284	0	ENST00000257430.4:c.7034T>G	p.Leu2345Arg	p.L2345R	ENST00000257430	NM_000038.5	2345	cTt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112178781	112178781	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	28	344	0	ENST00000257430.4:c.7490C>A	p.Ser2497Ter	p.S2497*	ENST00000257430	NM_000038.5	2497	tCg/tAg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131972841	131972841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	66	235	0	ENST00000265335.6:c.3424G>A	p.Glu1142Lys	p.E1142K	ENST00000265335		1142	Gaa/Aaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636787	176636787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	62	322	0	ENST00000439151.2:c.1387G>T	p.Asp463Tyr	p.D463Y	ENST00000439151	NM_022455.4	463	Gat/Tat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637822	176637822	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	105	384	0	ENST00000439151.2:c.2422G>T	p.Glu808Ter	p.E808*	ENST00000439151	NM_022455.4	808	Gag/Tag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673751	176673751	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	78	284	0	ENST00000439151.2:c.4451A>C	p.Lys1484Thr	p.K1484T	ENST00000439151	NM_022455.4	1484	aAa/aCa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166901	32166901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	133	837	0	ENST00000375023.3:c.4337C>A	p.Pro1446His	p.P1446H	ENST00000375023	NM_004557.3	1446	cCc/cAc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288252	33288252	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	87	466	0	ENST00000374542.5:c.1156A>C	p.Ser386Arg	p.S386R	ENST00000374542	NM_001141970.1	386	Agt/Cgt																																																																														
CCND3	896	MSKCC	GRCh37	6	41903815	41903815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	113	581	0	ENST00000372991.4:c.742G>A	p.Glu248Lys	p.E248K	ENST00000372991	NM_001760.3	248	Gaa/Aaa																																																																														
CCND3	896	MSKCC	GRCh37	6	41904434	41904434	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	100	549	0	ENST00000372991.4:c.575-1G>T		p.X192_splice	ENST00000372991	NM_001760.3	192																																																																															
SESN1	27244	MSKCC	GRCh37	6	109319915	109319915	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	62	396	0	ENST00000436639.2:c.773T>G	p.Leu258Trp	p.L258W	ENST00000436639	NM_014454.2	258	tTg/tGg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638382	117638382	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	39	307	0	ENST00000368508.3:c.6059A>C	p.Glu2020Ala	p.E2020A	ENST00000368508	NM_002944.2	2020	gAa/gCa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117645579	117645579	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	62	304	0	ENST00000368508.3:c.5558-1G>T		p.X1853_splice	ENST00000368508	NM_002944.2	1853																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519179	137519179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	13	143	0	ENST00000367739.4:c.1459G>A	p.Glu487Lys	p.E487K	ENST00000367739	NM_000416.2	487	Gaa/Aaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157256675	157256675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	84	254	0	ENST00000346085.5:c.2002A>G	p.Asn668Asp	p.N668D	ENST00000346085	NM_020732.3	668	Aac/Gac																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971145	13971145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	24	246	0	ENST00000405192.2:c.784G>A	p.Asp262Asn	p.D262N	ENST00000405192	NM_001163147.1	262	Gat/Aat																																																																														
ETV1	2115	MSKCC	GRCh37	7	14027743	14027743	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	60	233	0	ENST00000405192.2:c.101T>G	p.Phe34Cys	p.F34C	ENST00000405192	NM_001163147.1	34	tTc/tGc																																																																														
HGF	3082	MSKCC	GRCh37	7	81388074	81388074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	69	262	0	ENST00000222390.5:c.301T>C	p.Phe101Leu	p.F101L	ENST00000222390	NM_000601.4	101	Ttc/Ctc																																																																														
MET	4233	MSKCC	GRCh37	7	116340162	116340162	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	49	227	0	ENST00000397752.3:c.1024C>A	p.Leu342Ile	p.L342I	ENST00000397752	NM_000245.2	342	Ctt/Att																																																																														
MET	4233	MSKCC	GRCh37	7	116403126	116403126	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	56	281	1	ENST00000397752.3:c.2387C>A	p.Ser796Ter	p.S796*	ENST00000397752	NM_000245.2	796	tCa/tAa																																																																														
MET	4233	MSKCC	GRCh37	7	116403241	116403241	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs45450897		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	95	322	0	ENST00000397752.3:c.2502T>G	p.Ile834Met	p.I834M	ENST00000397752	NM_000245.2	834	atT/atG																																																																														
SMO	6608	MSKCC	GRCh37	7	128852036	128852036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761586263		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	95	732	0	ENST00000249373.3:c.2108G>A	p.Arg703Gln	p.R703Q	ENST00000249373	NM_005631.4	703	cGa/cAa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511154	148511154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	93	393	0	ENST00000320356.2:c.1748G>A	p.Arg583Gln	p.R583Q	ENST00000320356	NM_004456.4	583	cGa/cAa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148513855	148513855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	92	317	0	ENST00000320356.2:c.1426G>A	p.Val476Ile	p.V476I	ENST00000320356	NM_004456.4	476	Gtc/Atc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859470	151859470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	72	381	0	ENST00000262189.6:c.11192A>G	p.Gln3731Arg	p.Q3731R	ENST00000262189	NM_170606.2	3731	cAa/cGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874200	151874200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	58	250	0	ENST00000262189.6:c.8338C>A	p.Pro2780Thr	p.P2780T	ENST00000262189	NM_170606.2	2780	Cca/Aca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152027816	152027816	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	78	329	1	ENST00000262189.6:c.259G>T	p.Glu87Ter	p.E87*	ENST00000262189	NM_170606.2	87	Gaa/Taa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031705	69031705	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	87	332	0	ENST00000288368.4:c.3460A>C	p.Lys1154Gln	p.K1154Q	ENST00000288368	NM_024870.2	1154	Aaa/Caa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033254	69033254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1450803336		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	82	359	0	ENST00000288368.4:c.3694C>T	p.Leu1232Phe	p.L1232F	ENST00000288368	NM_024870.2	1232	Ctt/Ttt																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859828	117859828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	48	165	0	ENST00000297338.2:c.1807C>A	p.Leu603Ile	p.L603I	ENST00000297338	NM_006265.2	603	Ctt/Att																																																																														
RAD21	5885	MSKCC	GRCh37	8	117862877	117862877	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	30	244	0	ENST00000297338.2:c.1600G>T	p.Glu534Ter	p.E534*	ENST00000297338	NM_006265.2	534	Gaa/Taa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069064	5069064	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	59	189	0	ENST00000381652.3:c.1369A>C	p.Asn457His	p.N457H	ENST00000381652	NM_004972.3	457	Aat/Cat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080273	5080273	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	31	145	0	ENST00000381652.3:c.2176A>C	p.Asn726His	p.N726H	ENST00000381652	NM_004972.3	726	Aat/Cat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460421	8460421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	49	245	1	ENST00000356435.5:c.3865C>A	p.Leu1289Ile	p.L1289I	ENST00000356435		1289	Ctt/Att																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485907	8485907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	21	313	0	ENST00000356435.5:c.2910G>T	p.Gln970His	p.Q970H	ENST00000356435		970	caG/caT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633425	8633425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	55	302	0	ENST00000356435.5:c.244C>A	p.Leu82Ile	p.L82I	ENST00000356435		82	Ctc/Atc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317274	87317274	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs890209390		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	83	319	0	ENST00000277120.3:c.299A>G	p.Asp100Gly	p.D100G	ENST00000277120		100	gAt/gGt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87356828	87356828	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	50	202	0	ENST00000277120.3:c.1181A>G	p.Asp394Gly	p.D394G	ENST00000277120		394	gAt/gGt																																																																														
SYK	6850	MSKCC	GRCh37	9	93626877	93626877	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1211510060		P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	67	347	1	ENST00000375746.1:c.724G>A	p.Glu242Lys	p.E242K	ENST00000375746	NM_001174167.1	242	Gag/Aag																																																																														
ABL1	25	MSKCC	GRCh37	9	133753939	133753939	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	83	440	1	ENST00000318560.5:c.1408G>T	p.Glu470Ter	p.E470*	ENST00000318560	NM_005157.4	470	Gaa/Taa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781078	135781078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	109	526	1	ENST00000298552.3:c.1887G>T	p.Lys629Asn	p.K629N	ENST00000298552	NM_001162426.1	629	aaG/aaT																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300116	137300116	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	114	706	0	ENST00000481739.1:c.401T>G	p.Ile134Ser	p.I134S	ENST00000481739	NM_002957.4	134	aTc/aGc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411707	63411707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	101	719	0	ENST00000330258.3:c.1460T>C	p.Leu487Pro	p.L487P	ENST00000330258	NM_152424.3	487	cTg/cCg																																																																														
MED12	9968	MSKCC	GRCh37	X	70361782	70361782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	136	671	0	ENST00000374080.3:c.6458C>T	p.Ala2153Val	p.A2153V	ENST00000374080		2153	gCt/gTt																																																																														
BTK	695	MSKCC	GRCh37	X	100615596	100615596	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	59	480	0	ENST00000308731.7:c.736G>T	p.Glu246Ter	p.E246*	ENST00000308731	NM_000061.2	246	Gaa/Taa																																																																														
XIAP	331	MSKCC	GRCh37	X	123040904	123040904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	85	439	0	ENST00000355640.3:c.1367G>T	p.Arg456Ile	p.R456I	ENST00000355640		456	aGa/aTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224433	123224433	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	78	365	0	ENST00000218089.9:c.3286A>C	p.Ser1096Arg	p.S1096R	ENST00000218089	NM_001042749.1	1096	Agt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0041374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	608	609	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
RB1	5925	MSKCC	GRCh37	13	48916851	48916851	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1131690902		P-0041374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	171	279	0	ENST00000267163.4:c.380+1G>A		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49442441	49442441	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	222	558	0	ENST00000301067.7:c.4131+1G>T		p.X1377_splice	ENST00000301067	NM_003482.3	1377																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445089	49445089	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1360040004		P-0041374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	583	670	0	ENST00000301067.7:c.2377G>T	p.Glu793Ter	p.E793*	ENST00000301067	NM_003482.3	793	Gag/Tag																																																																														
NUP93	9688	MSKCC	GRCh37	16	56873443	56873443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	198	405	0	ENST00000308159.5:c.2147G>T	p.Arg716Leu	p.R716L	ENST00000308159	NM_014669.4	716	cGc/cTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965838	18965838	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	266	482	0	ENST00000262803.5:c.1416C>A	p.Asn472Lys	p.N472K	ENST00000262803	NM_002911.3	472	aaC/aaA																																																																														
AXL	558	MSKCC	GRCh37	19	41762505	41762505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	159	361	0	ENST00000301178.4:c.2185A>G	p.Lys729Glu	p.K729E	ENST00000301178	NM_021913.4	729	Aag/Gag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539723	187539724	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	331	379	0	ENST00000441802.2:c.8016dup	p.Val2673CysfsTer2	p.V2673Cfs*2	ENST00000441802	NM_005245.3	2672	-/T																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38953117	38953117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	67	202	0	ENST00000357387.3:c.2867C>T	p.Ala956Val	p.A956V	ENST00000357387	NM_152756.3	956	gCa/gTa																																																																														
APC	324	MSKCC	GRCh37	5	112177335	112177335	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	231	264	0	ENST00000257430.4:c.6044A>T	p.Glu2015Val	p.E2015V	ENST00000257430	NM_000038.5	2015	gAa/gTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874227	151874227	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	280	332	0	ENST00000262189.6:c.8311A>T	p.Ser2771Cys	p.S2771C	ENST00000262189	NM_170606.2	2771	Agc/Tgc																																																																														
MPL	4352	MSKCC	GRCh37	1	43812138	43812138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139770726		P-0041513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	134	737	1	ENST00000372470.3:c.1003G>A	p.Glu335Lys	p.E335K	ENST00000372470	NM_005373.2	335	Gaa/Aaa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542584	141542592	+	inframe_deletion	In_Frame_Del	DEL	GCTGGGATG	GCTGGGATG	-			P-0041513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	195	1037	2	ENST00000220592.5:c.2394_2402del	p.Ile799_Ala801del	p.I799_A801del	ENST00000220592	NM_012154.3	798	tcCATCCCAGCg/tcg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	118	498	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	44	373	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	139	772	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
BCL6	604	MSKCC	GRCh37	3	187451474	187451474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145456310		P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	112	411	1	ENST00000232014.4:c.8C>T	p.Ser3Leu	p.S3L	ENST00000232014	NM_001130845.1	3	tCg/tTg																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502828	186502828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	107	544	0	ENST00000323963.5:c.286G>C	p.Glu96Gln	p.E96Q	ENST00000323963		96	Gag/Cag																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868516	117868516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	21	284	0	ENST00000297338.2:c.826G>C	p.Asp276His	p.D276H	ENST00000297338	NM_006265.2	276	Gat/Cat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445575	49445575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	126	934	1	ENST00000301067.7:c.1891G>A	p.Glu631Lys	p.E631K	ENST00000301067	NM_003482.3	631	Gag/Aag																																																																														
EZH1	2145	MSKCC	GRCh37	17	40854926	40854926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	156	631	0	ENST00000428826.2:c.2152C>T	p.Gln718Ter	p.Q718*	ENST00000428826		718	Caa/Taa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741835	17741875	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCGCCCCCTGGCGCCGCAGCCGCCTTCTATGCGCCGGGC	CCGCGCCCCCTGGCGCCGCAGCCGCCTTCTATGCGCCGGGC	-			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	58	213	0	ENST00000250003.3:c.510_550del	p.Pro171AlafsTer93	p.P171Afs*93	ENST00000250003	NM_002478.4	169	gCCGCGCCCCCTGGCGCCGCAGCCGCCTTCTATGCGCCGGGC/g																																																																														
SDHD	6392	MSKCC	GRCh37	11	111965548	111965551	+	frameshift_variant	Frame_Shift_Del	DEL	ACTG	ACTG	-			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	45	229	0	ENST00000375549.3:c.337_340del	p.Asp113MetfsTer21	p.D113Mfs*21	ENST00000375549	NM_003002.3	112	ACTGac/ac																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109925	115109925	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs757838938		P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	104	673	0	ENST00000257566.3:c.1953C>G	p.Asp651Glu	p.D651E	ENST00000257566	NM_016569.3	651	gaC/gaG																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135409	30135409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	57	383	1	ENST00000331968.5:c.409G>T	p.Ala137Ser	p.A137S	ENST00000331968	NM_002742.2	137	Gcc/Tcc																																																																														
MGA	23269	MSKCC	GRCh37	15	41989222	41989222	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	60	427	0	ENST00000219905.7:c.2013+1G>T		p.X671_splice	ENST00000219905	NM_001164273.1	671																																																																															
EZH1	2145	MSKCC	GRCh37	17	40854949	40854949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	164	627	1	ENST00000428826.2:c.2129G>T	p.Gly710Val	p.G710V	ENST00000428826		710	gGg/gTg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11031565	11031565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	112	790	1	ENST00000327064.4:c.1480G>A	p.Glu494Lys	p.E494K	ENST00000327064	NM_199141.1	494	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668664	52668664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1343496358		P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	99	563	0	ENST00000394830.3:c.1255G>A	p.Asp419Asn	p.D419N	ENST00000394830	NM_018313.4	419	Gat/Aat																																																																														
IRF4	3662	MSKCC	GRCh37	6	398910	398910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	73	537	0	ENST00000380956.4:c.720G>T	p.Arg240Ser	p.R240S	ENST00000380956	NM_001195286.1	240	agG/agT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964367	93964367	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	66	419	0	ENST00000369303.4:c.2530G>A	p.Asp844Asn	p.D844N	ENST00000369303	NM_004440.3	844	Gat/Aat																																																																														
HGF	3082	MSKCC	GRCh37	7	81392159	81392159	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1241118241		P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	20	302	0	ENST00000222390.5:c.118C>A	p.His40Asn	p.H40N	ENST00000222390	NM_000601.4	40	Cat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968088	68968088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	92	520	0	ENST00000288368.4:c.1117G>T	p.Asp373Tyr	p.D373Y	ENST00000288368	NM_024870.2	373	Gat/Tat																																																																														
AGO2	27161	MSKCC	GRCh37	8	141549505	141549505	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	70	490	2	ENST00000220592.5:c.2083G>C	p.Glu695Gln	p.E695Q	ENST00000220592	NM_012154.3	695	Gaa/Caa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410837	63410837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	93	714	0	ENST00000330258.3:c.2330C>A	p.Thr777Asn	p.T777N	ENST00000330258	NM_152424.3	777	aCc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519981		P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	226	522	0	ENST00000269305.4:c.712T>G	p.Cys238Gly	p.C238G	ENST00000269305	NM_001126112.2	238	Tgt/Ggt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253826	153253826	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	117	268	0	ENST00000281708.4:c.907C>T	p.Gln303Ter	p.Q303*	ENST00000281708	NM_033632.3	303	Caa/Taa																																																																														
PAK1	5058	MSKCC	GRCh37	11	77069942	77069942	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	43	359	0	ENST00000356341.3:c.597+1G>T		p.X199_splice	ENST00000356341	NM_002576.4	199																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81971384	81971384	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	132	396	0	ENST00000359376.3:c.3074A>T	p.His1025Leu	p.H1025L	ENST00000359376	NM_002661.3	1025	cAc/cTc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39751860	39751860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	31	379	0	ENST00000361337.2:c.2221G>C	p.Glu741Gln	p.E741Q	ENST00000361337	NM_003286.2	741	Gag/Cag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31508819	31508819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	42	556	0	ENST00000344624.3:c.1496C>G	p.Ser499Cys	p.S499C	ENST00000344624		499	tCt/tGt																																																																														
HGF	3082	MSKCC	GRCh37	7	81355209	81355209	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	36	166	0	ENST00000222390.5:c.1165C>T	p.Gln389Ter	p.Q389*	ENST00000222390	NM_000601.4	389	Caa/Taa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395003	139395003	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0041582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	86	401	0	ENST00000277541.6:c.5934+1G>A		p.X1978_splice	ENST00000277541	NM_017617.3	1978																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9858517	9858517	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765370528		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	95	417	0	ENST00000330684.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000330684	NM_001134407.1	962	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793483	18793483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267603405		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	39	268	0	ENST00000266497.5:c.4180G>A	p.Glu1394Lys	p.E1394K	ENST00000266497		1394	Gaa/Aaa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781193	135781193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768985094		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	202	492	0	ENST00000298552.3:c.1772C>T	p.Pro591Leu	p.P591L	ENST00000298552	NM_001162426.1	591	cCg/cTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857556	9857556	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1480366023		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	102	349	0	ENST00000330684.3:c.3845A>G	p.Asn1282Ser	p.N1282S	ENST00000330684	NM_001134407.1	1282	aAc/aGc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795073	242795073	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1429395114		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	319	728	0	ENST00000334409.5:c.136G>A	p.Glu46Lys	p.E46K	ENST00000334409	NM_005018.2	46	Gaa/Aaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578214	28578214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778369		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	119	426	2	ENST00000241453.7:c.2957C>T	p.Pro986Leu	p.P986L	ENST00000241453	NM_004119.2	986	cCg/cTg																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267600971		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	436	675	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117650583	117650583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	48	432	0	ENST00000368508.3:c.5275C>T	p.Pro1759Ser	p.P1759S	ENST00000368508	NM_002944.2	1759	Ccc/Tcc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679798	88679798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774739739		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	190	471	1	ENST00000360948.2:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000360948	NM_001012338.2	222	cGa/cAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27203119	27203119	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	107	374	1	ENST00000380036.4:c.2209+2T>C		p.X737_splice	ENST00000380036	NM_000459.3	737																																																																															
FLT3	2322	MSKCC	GRCh37	13	28626694	28626694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	151	339	0	ENST00000241453.7:c.602C>T	p.Ser201Leu	p.S201L	ENST00000241453	NM_004119.2	201	tCa/tTa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922009	39922009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	200	506	0	ENST00000378444.4:c.4163C>T	p.Ala1388Val	p.A1388V	ENST00000378444	NM_001123385.1	1388	gCc/gTc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813599	50813599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	93	421	0	ENST00000398568.2:c.1153C>T	p.Leu385Phe	p.L385F	ENST00000398568	NM_001042412.1	385	Ctt/Ttt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32900639	32900639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41293469		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	63	317	0	ENST00000380152.3:c.520C>T	p.Arg174Cys	p.R174C	ENST00000380152		174	Cgt/Tgt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123263415	123263415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757125418		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	157	383	0	ENST00000358487.5:c.1328C>T	p.Pro443Leu	p.P443L	ENST00000358487	NM_000141.4	443	cCg/cTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860908	151860908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	51	231	0	ENST00000262189.6:c.9754C>T	p.Arg3252Cys	p.R3252C	ENST00000262189	NM_170606.2	3252	Cgt/Tgt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678334	88678334	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	167	492	0	ENST00000360948.2:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000360948	NM_001012338.2	401	cCa/cTa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221162	5221162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	296	594	1	ENST00000357368.4:c.3304C>T	p.Arg1102Cys	p.R1102C	ENST00000357368	NM_002850.3	1102	Cgc/Tgc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958126	2958126	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs763435728		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	569	645	2	ENST00000396946.4:c.2606G>A	p.Arg869Gln	p.R869Q	ENST00000396946	NM_032415.4	869	cGg/cAg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982408	201982408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	301	672	1	ENST00000359651.3:c.787G>A	p.Gly263Ser	p.G263S	ENST00000359651		263	Ggc/Agc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858062	152858062	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	219	489	0	ENST00000406277.2:c.553C>T	p.Gln185Ter	p.Q185*	ENST00000406277	NM_152274.4	185	Cag/Tag																																																																														
AKT3	10000	MSKCC	GRCh37	1	243668595	243668595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	51	313	1	ENST00000263826.5:c.1396C>T	p.Pro466Ser	p.P466S	ENST00000263826	NM_005465.4	466	Ccg/Tcg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498709	246498709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	100	460	0	ENST00000388985.4:c.296C>T	p.Pro99Leu	p.P99L	ENST00000388985		99	cCa/cTa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100331	8100332	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1318	268	655	0	ENST00000346208.3:c.305_306delinsTT	p.Ala102Val	p.A102V	ENST00000346208		102	gCC/gTT																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724352	112724352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	154	498	0	ENST00000369452.4:c.236C>T	p.Pro79Leu	p.P79L	ENST00000369452	NM_007373.3	79	cCt/cTt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	430261	430261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	51	238	0	ENST00000399788.2:c.2441G>A	p.Ser814Asn	p.S814N	ENST00000399788	NM_001042603.1	814	aGt/aAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18446909	18446909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	14	272	0	ENST00000266497.5:c.994C>T	p.His332Tyr	p.H332Y	ENST00000266497		332	Cat/Tat																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50492563	50492563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	244	579	0	ENST00000394963.4:c.1459G>A	p.Ala487Thr	p.A487T	ENST00000394963	NM_003076.4	487	Gct/Act																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557727	21557727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	261	585	0	ENST00000382592.4:c.2118C>A	p.Asn706Lys	p.N706K	ENST00000382592	NM_014572.2	706	aaC/aaA																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562727	21562727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	202	522	1	ENST00000382592.4:c.1192C>T	p.Pro398Ser	p.P398S	ENST00000382592	NM_014572.2	398	Cct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906780	32906781	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	47	540	0	ENST00000380152.3:c.1165_1166delinsTT	p.Pro389Leu	p.P389L	ENST00000380152		389	CCg/TTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30102104	30102104	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	96	425	0	ENST00000331968.5:c.1363C>T	p.Gln455Ter	p.Q455*	ENST00000331968	NM_002742.2	455	Cag/Tag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476351	88476351	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	227	536	1	ENST00000360948.2:c.1781A>G	p.Asn594Ser	p.N594S	ENST00000360948	NM_001012338.2	594	aAc/aGc																																																																														
BLM	641	MSKCC	GRCh37	15	91298061	91298061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	53	257	0	ENST00000355112.3:c.980C>G	p.Thr327Ser	p.T327S	ENST00000355112	NM_000057.2	327	aCc/aGc																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096334	2096334	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139165943		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	344	657	1	ENST00000219066.1:c.173C>T	p.Pro58Leu	p.P58L	ENST00000219066	NM_002528.5	58	cCg/cTg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032494	12032494	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	41	261	0	ENST00000353533.5:c.930G>A	p.Trp310Ter	p.W310*	ENST00000353533	NM_003010.3	310	tgG/tgA																																																																														
NF1	4763	MSKCC	GRCh37	17	29661898	29661899	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	32	378	1	ENST00000358273.4:c.5855_5856delinsAA	p.Trp1952Ter	p.W1952*	ENST00000358273	NM_001042492.2	1952	tGG/tAA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224393	36224393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	325	753	0	ENST00000222270.7:c.6943G>A	p.Gly2315Arg	p.G2315R	ENST00000222270	NM_014727.1	2315	Ggg/Agg																																																																														
AXL	558	MSKCC	GRCh37	19	41754509	41754509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	264	646	0	ENST00000301178.4:c.1628G>A	p.Gly543Glu	p.G543E	ENST00000301178	NM_021913.4	543	gGa/gAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42791051	42791051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	160	394	1	ENST00000575354.2:c.196G>A	p.Val66Met	p.V66M	ENST00000575354	NM_015125.3	66	Gtg/Atg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794760	42794760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756285021		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	246	525	2	ENST00000575354.2:c.1840C>T	p.Pro614Ser	p.P614S	ENST00000575354	NM_015125.3	614	Ccc/Tcc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26022302	26022302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	132	479	0	ENST00000435504.4:c.355G>A	p.Asp119Asn	p.D119N	ENST00000435504		119	Gat/Aat																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719658	190719658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	13	170	0	ENST00000441310.2:c.1660G>T	p.Asp554Tyr	p.D554Y	ENST00000441310	NM_000534.4	554	Gat/Tat																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735635	204735635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	96	282	1	ENST00000302823.3:c.436G>A	p.Gly146Arg	p.G146R	ENST00000302823	NM_005214.4	146	Gga/Aga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537927	212537927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	88	388	0	ENST00000342788.4:c.1678G>A	p.Glu560Lys	p.E560K	ENST00000342788	NM_005235.2	560	Gag/Aag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371718	225371718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	39	377	2	ENST00000264414.4:c.886C>T	p.Leu296Phe	p.L296F	ENST00000264414	NM_003590.4	296	Ctt/Ttt																																																																														
TOP1	7150	MSKCC	GRCh37	20	39746834	39746835	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	90	373	0	ENST00000361337.2:c.1848_1849delinsTT	p.Leu617Phe	p.L617F	ENST00000361337	NM_003286.2	616	atCCtt/atTTtt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264119	46264119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1250026993		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	76	261	0	ENST00000371998.3:c.1166C>T	p.Pro389Leu	p.P389L	ENST00000371998		389	cCa/cTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295204	1295205	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	119	297	0				ENST00000310581	NM_198253.2																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149514405	149514405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17853027		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	167	448	0	ENST00000261799.4:c.539C>T	p.Ser180Phe	p.S180F	ENST00000261799	NM_002609.3	180	tCt/tTt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637387	176637387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	76	397	0	ENST00000439151.2:c.1987C>T	p.Leu663Phe	p.L663F	ENST00000439151	NM_022455.4	663	Ctt/Ttt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665451	176665451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	167	320	0	ENST00000439151.2:c.4135C>T	p.Pro1379Ser	p.P1379S	ENST00000439151	NM_022455.4	1379	Ccg/Tcg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180041152	180041152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	344	684	0	ENST00000261937.6:c.3247C>T	p.Pro1083Ser	p.P1083S	ENST00000261937	NM_182925.4	1083	Cct/Tct																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043431	180043431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	304	611	0	ENST00000261937.6:c.3155A>G	p.Lys1052Arg	p.K1052R	ENST00000261937	NM_182925.4	1052	aAg/aGg																																																																														
HGF	3082	MSKCC	GRCh37	7	81335056	81335056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	33	241	0	ENST00000222390.5:c.1771G>A	p.Asp591Asn	p.D591N	ENST00000222390	NM_000601.4	591	Gat/Aat																																																																														
MET	4233	MSKCC	GRCh37	7	116412000	116412000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	97	571	0	ENST00000397752.3:c.2985G>A	p.Met995Ile	p.M995I	ENST00000397752	NM_000245.2	995	atG/atA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151868380	151868380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	119	423	0	ENST00000262189.6:c.9422G>A	p.Gly3141Glu	p.G3141E	ENST00000262189	NM_170606.2	3141	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945084	151945084	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	35	527	0	ENST00000262189.6:c.2435T>G	p.Met812Arg	p.M812R	ENST00000262189	NM_170606.2	812	aTg/aGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	143	288	0	ENST00000304494.5:c.95T>G	p.Leu32Arg	p.L32R	ENST00000304494	NM_000077.4	32	cTg/cGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	143	288	0	ENST00000304494.5:c.95T>G	p.Leu32Arg	p.L32R	ENST00000304494	NM_000077.4	32	cTg/cGg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128268667	128268667	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756247676		P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	320	539	0	ENST00000265960.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000265960	NM_001006617.1	330	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76778817	76778817	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	52	400	0	ENST00000373344.5:c.6762T>A	p.His2254Gln	p.H2254Q	ENST00000373344	NM_000489.3	2254	caT/caA																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191755	123191755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	40	333	0	ENST00000218089.9:c.1344G>A	p.Met448Ile	p.M448I	ENST00000218089	NM_001042749.1	448	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	554	587	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
RET	5979	MSKCC	GRCh37	10	43622125	43622125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774347808		P-0041593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	397	470	2	ENST00000355710.3:c.3142C>T	p.Leu1048Phe	p.L1048F	ENST00000355710	NM_020975.4	1048	Ctc/Ttc																																																																														
ATM	472	MSKCC	GRCh37	11	108224518	108224518	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1333079704		P-0041593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	133	243	0	ENST00000278616.4:c.8697C>G	p.Ile2899Met	p.I2899M	ENST00000278616	NM_000051.3	2899	atC/atG																																																																														
RB1	5925	MSKCC	GRCh37	13	48916811	48916811	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	490	348	0	ENST00000267163.4:c.341C>A	p.Ser114Ter	p.S114*	ENST00000267163	NM_000321.2	114	tCg/tAg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89839741	89839741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	769	680	0	ENST00000389301.3:c.1952G>A	p.Gly651Glu	p.G651E	ENST00000389301	NM_000135.2	651	gGa/gAa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25457240	25457240	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	269	526	0	ENST00000264709.3:c.2647T>A	p.Leu883Met	p.L883M	ENST00000264709	NM_175629.2	883	Ttg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112164589	112164589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	110	213	0	ENST00000257430.4:c.1663G>A	p.Ala555Thr	p.A555T	ENST00000257430	NM_000038.5	555	Gca/Aca																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139440236	139440236	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0041593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	38	49	0	ENST00000277541.6:c.3G>T	p.Met1?	p.M1?	ENST00000277541	NM_017617.3	1	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0041601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	76	430	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495212	212495212	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs758422014		P-0041601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	56	392	1	ENST00000342788.4:c.2054C>A	p.Ala685Asp	p.A685D	ENST00000342788	NM_005235.2	685	gCc/gAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722220	176722220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	50	503	0	ENST00000439151.2:c.7851G>T	p.Leu2617Phe	p.L2617F	ENST00000439151	NM_022455.4	2617	ttG/ttT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	100	368	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	70	309	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519378	176519378	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148292303		P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	159	673	1	ENST00000292408.4:c.784G>A	p.Val262Met	p.V262M	ENST00000292408	NM_213647.1	262	Gtg/Atg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865761	57865761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	57	704	0	ENST00000228682.2:c.3238C>A	p.Pro1080Thr	p.P1080T	ENST00000228682	NM_005269.2	1080	Ccc/Acc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058653	72058653	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	42	279	0	ENST00000357731.5:c.789-2A>T		p.X263_splice	ENST00000357731	NM_173808.2	263																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120458146	120458146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	71	647	1	ENST00000256646.2:c.7199G>T	p.Arg2400Leu	p.R2400L	ENST00000256646	NM_024408.3	2400	cGa/cTa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495064	56495064	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1170241416		P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	115	674	1	ENST00000267101.3:c.3421A>T	p.Thr1141Ser	p.T1141S	ENST00000267101	NM_001982.3	1141	Act/Tct																																																																														
SOS1	6654	MSKCC	GRCh37	2	39285815	39285815	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	104	450	0	ENST00000402219.2:c.344A>T	p.Lys115Met	p.K115M	ENST00000402219	NM_005633.3	115	aAg/aTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039418	47039418	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	177	634	1	ENST00000329236.7:c.810C>A	p.Phe270Leu	p.F270L	ENST00000329236	NM_001204466.1	270	ttC/ttA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1325	151	169	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398262	25398262	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913538		P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	213	116	0	ENST00000256078.4:c.57G>C	p.Leu19Phe	p.L19F	ENST00000256078	NM_033360.2	19	ttG/ttC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	589	312	0	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476272	88476272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	107	180	0	ENST00000360948.2:c.1860G>A	p.Met620Ile	p.M620I	ENST00000360948	NM_001012338.2	620	atG/atA																																																																														
SUFU	51684	MSKCC	GRCh37	10	104359302	104359302	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776578		P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	298	153	0	ENST00000369902.3:c.1022+1G>A		p.X341_splice	ENST00000369902	NM_016169.3	341																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25462077	25462077	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752626029		P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	256	174	0	ENST00000264709.3:c.2330C>T	p.Pro777Leu	p.P777L	ENST00000264709	NM_175629.2	777	cCt/cTt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216463	2216463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1401443478		P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	164	280	0	ENST00000398665.3:c.2107C>T	p.His703Tyr	p.H703Y	ENST00000398665	NM_032482.2	703	Cac/Tac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223529	36223529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	185	325	0	ENST00000222270.7:c.6079G>C	p.Glu2027Gln	p.E2027Q	ENST00000222270	NM_014727.1	2027	Gag/Cag																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46608744	46608744	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	146	235	0	ENST00000263734.3:c.2055G>C	p.Lys685Asn	p.K685N	ENST00000263734	NM_001430.4	685	aaG/aaC																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47596691	47596691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	132	134	0	ENST00000263735.4:c.47C>A	p.Ala16Glu	p.A16E	ENST00000263735	NM_002354.2	16	gCg/gAg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128036845	128036845	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	375	196	0	ENST00000285398.2:c.1634A>G	p.Gln545Arg	p.Q545R	ENST00000285398	NM_000122.1	545	cAg/cGg																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872839	136872839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	191	136	0	ENST00000241393.3:c.659G>A	p.Cys220Tyr	p.C220Y	ENST00000241393	NM_003467.2	220	tGc/tAc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225342966	225342966	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1159640544		P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	394	177	0	ENST00000264414.4:c.2126G>A	p.Arg709Gln	p.R709Q	ENST00000264414	NM_003590.4	709	cGg/cAg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417859	138417859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	134	141	0	ENST00000289153.2:c.1660G>C	p.Glu554Gln	p.E554Q	ENST00000289153	NM_006219.2	554	Gaa/Caa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461465	138461465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	122	155	0	ENST00000289153.2:c.556G>A	p.Glu186Lys	p.E186K	ENST00000289153	NM_006219.2	186	Gaa/Aaa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86629109	86629109	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	11	91	0	ENST00000274376.6:c.854G>C	p.Arg285Pro	p.R285P	ENST00000274376	NM_002890.2	285	cGa/cCa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675668	86675668	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	53	79	0	ENST00000274376.6:c.2603+1G>C		p.X868_splice	ENST00000274376	NM_002890.2	868																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729255	41729255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	149	95	0	ENST00000242208.4:c.1274G>T	p.Cys425Phe	p.C425F	ENST00000242208	NM_002192.2	425	tGc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0041623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	451	578	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251730	212251730	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	64	353	0	ENST00000342788.4:c.3329C>G	p.Thr1110Ser	p.T1110S	ENST00000342788	NM_005235.2	1110	aCc/aGc																																																																														
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	61	193	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0041640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	261	783	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																														
APC	324	MSKCC	GRCh37	5	112175015	112175015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	81	179	0	ENST00000257430.4:c.3724C>T	p.Gln1242Ter	p.Q1242*	ENST00000257430	NM_000038.5	1242	Cag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914339	32914341	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0041640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	113	428	0	ENST00000380152.3:c.5848_5850del	p.Val1950del	p.V1950del	ENST00000380152		1949	gaTGTt/gat																																																																														
CTCF	10664	MSKCC	GRCh37	16	67670703	67670703	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	236	569	0	ENST00000264010.4:c.1948A>T	p.Lys650Ter	p.K650*	ENST00000264010	NM_006565.3	650	Aag/Tag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71096193	71096194	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	108	361	0	ENST00000318789.4:c.563dup	p.Met188IlefsTer107	p.M188Ifs*107	ENST00000318789	NM_032682.5	188	atg/atTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0041718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	254	623	0	ENST00000288135.5:c.1504_1509dup	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023438	27023438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	82	434	0	ENST00000324856.7:c.544G>T	p.Ala182Ser	p.A182S	ENST00000324856	NM_006015.4	182	Gca/Tca																																																																														
MGA	23269	MSKCC	GRCh37	15	42058799	42058799	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	52	365	0	ENST00000219905.7:c.8519A>G	p.Asp2840Gly	p.D2840G	ENST00000219905	NM_001164273.1	2840	gAc/gGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993878	72993878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	89	579	0	ENST00000268489.5:c.167C>T	p.Pro56Leu	p.P56L	ENST00000268489	NM_006885.3	56	cCc/cTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81934366	81934367	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	96	622	2	ENST00000359376.3:c.1343_1344delinsTT	p.Arg448Leu	p.R448L	ENST00000359376	NM_002661.3	448	cGG/cTT																																																																														
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1359582062		P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	123	739	1	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469627	25469627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	148	673	1	ENST00000264709.3:c.1141G>T	p.Gly381Trp	p.G381W	ENST00000264709	NM_175629.2	381	Ggg/Tgg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	28	401	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928908	49928908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	138	834	3	ENST00000296474.3:c.3458C>A	p.Pro1153His	p.P1153H	ENST00000296474	NM_002447.2	1153	cCt/cAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521331	8521331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	59	466	0	ENST00000356435.5:c.907G>A	p.Val303Ile	p.V303I	ENST00000356435		303	Gtt/Att																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227712	53227712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	122	338	1	ENST00000375401.3:c.2476G>A	p.Val826Met	p.V826M	ENST00000375401	NM_004187.3	826	Gtg/Atg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0041832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	20	658	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30315383	30315383	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	29	752	0	ENST00000322652.5:c.1068G>T	p.Gln356His	p.Q356H	ENST00000322652	NM_015355.2	356	caG/caT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0041835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	101	679	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	1063	479	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220428	123220428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	96	553	0	ENST00000218089.9:c.3085C>T	p.Gln1029Ter	p.Q1029*	ENST00000218089	NM_001042749.1	1029	Cag/Tag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882319	89882319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	68	682	0	ENST00000389301.3:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000389301	NM_000135.2	52	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913238		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2047	208	637	1	ENST00000256078.4:c.181C>G	p.Gln61Glu	p.Q61E	ENST00000256078	NM_033360.2	61	Caa/Gaa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2227019	2227019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	128	603	0	ENST00000398665.3:c.4499C>G	p.Ser1500Cys	p.S1500C	ENST00000398665	NM_032482.2	1500	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	509	916	1	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813626	50813626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149427272		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	249	806	1	ENST00000398568.2:c.1180C>T	p.Arg394Cys	p.R394C	ENST00000398568	NM_001042412.1	394	Cgt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266490	55266490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	89	763	0	ENST00000275493.2:c.2782G>C	p.Glu928Gln	p.E928Q	ENST00000275493	NM_005228.3	928	Gag/Cag																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169940469	169940469	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1082973		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	49	560	0	ENST00000295797.4:c.12G>C	p.Gln4His	p.Q4H	ENST00000295797	NM_002740.5	4	caG/caC																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390623	139390623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	98	1157	1	ENST00000277541.6:c.7568C>T	p.Ser2523Leu	p.S2523L	ENST00000277541	NM_017617.3	2523	tCg/tTg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8105995	8105995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	156	631	0	ENST00000346208.3:c.815C>T	p.Pro272Leu	p.P272L	ENST00000346208		272	cCa/cTa																																																																														
ALK	238	MSKCC	GRCh37	2	29446232	29446232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	196	759	1	ENST00000389048.3:c.3335C>A	p.Pro1112Gln	p.P1112Q	ENST00000389048	NM_004304.4	1112	cCg/cAg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430001	78430001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	37	313	0	ENST00000370768.2:c.878G>A	p.Arg293Lys	p.R293K	ENST00000370768	NM_003902.3	293	aGa/aAa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243727042	243727042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	80	461	0	ENST00000263826.5:c.928C>G	p.Pro310Ala	p.P310A	ENST00000263826	NM_005465.4	310	Cca/Gca																																																																														
YAP1	10413	MSKCC	GRCh37	11	102076704	102076704	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	213	646	0	ENST00000282441.5:c.883A>T	p.Met295Leu	p.M295L	ENST00000282441	NM_001130145.2	295	Atg/Ttg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118380809	118380809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	35	463	0	ENST00000534358.1:c.11047C>G	p.Gln3683Glu	p.Q3683E	ENST00000534358	NM_005933.3	3683	Cag/Gag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498227	498227	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	49	393	0	ENST00000399788.2:c.31del	p.Ala11ArgfsTer55	p.A11Rfs*55	ENST00000399788	NM_001042603.1	11	Gcg/cg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650628	18650628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	59	560	1	ENST00000266497.5:c.2839G>T	p.Gly947Cys	p.G947C	ENST00000266497		947	Ggc/Tgc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748729	43748729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	108	1048	0	ENST00000382044.4:c.2077C>A	p.Pro693Thr	p.P693T	ENST00000382044	NM_001141980.1	693	Ccg/Acg																																																																														
CD276	80381	MSKCC	GRCh37	15	74000683	74000683	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	244	783	1	ENST00000318443.5:c.1373A>T	p.Gln458Leu	p.Q458L	ENST00000318443	NM_001024736.1	458	cAg/cTg																																																																														
BLM	641	MSKCC	GRCh37	15	91298083	91298084	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	58	474	0	ENST00000355112.3:c.1002_1003delinsAT	p.Leu335Phe	p.L335F	ENST00000355112	NM_000057.2	334	gtTCtt/gtATtt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99491803	99491803	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	70	493	1	ENST00000268035.6:c.3588G>T	p.Trp1196Cys	p.W1196C	ENST00000268035	NM_000875.3	1196	tgG/tgT																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658581	3658581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1295	208	1034	0	ENST00000294008.3:c.385C>A	p.Gln129Lys	p.Q129K	ENST00000294008	NM_032444.2	129	Caa/Aaa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868347	56868347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	90	414	0	ENST00000308159.5:c.1730G>T	p.Ser577Ile	p.S577I	ENST00000308159	NM_014669.4	577	aGc/aTc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40872357	40872357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	147	946	0	ENST00000428826.2:c.598G>T	p.Gly200Ter	p.G200*	ENST00000428826		200	Gga/Tga																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217051	2217051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	150	930	1	ENST00000398665.3:c.2506G>T	p.Gly836Trp	p.G836W	ENST00000398665	NM_032482.2	836	Ggg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296482	15296482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	170	1160	0	ENST00000263388.2:c.1960T>C	p.Cys654Arg	p.C654R	ENST00000263388	NM_000435.2	654	Tgt/Cgt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353853	15353853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	110	715	0	ENST00000263377.2:c.3027A>T	p.Gln1009His	p.Q1009H	ENST00000263377	NM_058243.2	1009	caA/caT																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376786	31376786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	185	789	0	ENST00000328111.2:c.781G>T	p.Val261Phe	p.V261F	ENST00000328111	NM_006892.3	261	Gtc/Ttc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919164	178919164	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1223886939		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	38	255	0	ENST00000263967.3:c.649C>T	p.Pro217Ser	p.P217S	ENST00000263967	NM_006218.2	217	Cca/Tca																																																																														
TP63	8626	MSKCC	GRCh37	3	189604286	189604286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	47	603	0	ENST00000264731.3:c.1453C>G	p.Gln485Glu	p.Q485E	ENST00000264731	NM_003722.4	485	Cag/Gag																																																																														
FYN	2534	MSKCC	GRCh37	6	112041191	112041191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	211	722	0	ENST00000368678.4:c.64C>A	p.Leu22Met	p.L22M	ENST00000368678		22	Ctg/Atg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975442	13975442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	59	474	0	ENST00000405192.2:c.445C>T	p.His149Tyr	p.H149Y	ENST00000405192	NM_001163147.1	149	Cat/Tat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266546	55266546	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	78	665	0	ENST00000275493.2:c.2838C>G	p.Ile946Met	p.I946M	ENST00000275493	NM_005228.3	946	atC/atG																																																																														
PREX2	80243	MSKCC	GRCh37	8	69032510	69032510	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs995332079		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	145	709	0	ENST00000288368.4:c.3584G>A	p.Arg1195Gln	p.R1195Q	ENST00000288368	NM_024870.2	1195	cGa/cAa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970889	70970889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	198	646	1	ENST00000276594.2:c.1372C>A	p.His458Asn	p.H458N	ENST00000276594	NM_024504.3	458	Cac/Aac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341821	8341821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	192	752	0	ENST00000356435.5:c.4819G>T	p.Asp1607Tyr	p.D1607Y	ENST00000356435		1607	Gat/Tat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401783	139401783	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs754056142		P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	120	1048	0	ENST00000277541.6:c.3617A>G	p.Lys1206Arg	p.K1206R	ENST00000277541	NM_017617.3	1206	aAg/aGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045953	47045953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	146	1020	0	ENST00000329236.7:c.2514G>C	p.Glu838Asp	p.E838D	ENST00000329236	NM_001204466.1	838	gaG/gaC																																																																														
AR	367	MSKCC	GRCh37	X	66931322	66931322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	338	661	0	ENST00000374690.3:c.1964A>G	p.Glu655Gly	p.E655G	ENST00000374690	NM_000044.3	655	gAg/gGg																																																																														
BTK	695	MSKCC	GRCh37	X	100608322	100608322	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	190	739	0	ENST00000308731.7:c.1768A>C	p.Ile590Leu	p.I590L	ENST00000308731	NM_000061.2	590	Att/Ctt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220419	123220419	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	86	523	0	ENST00000218089.9:c.3076A>C	p.Met1026Leu	p.M1026L	ENST00000218089	NM_001042749.1	1026	Atg/Ctg																																																																														
BLM	641	MSKCC	GRCh37	15	91298084	91298084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	58	472	0	ENST00000355112.3:c.1003C>T	p.Leu335Phe	p.L335F	ENST00000355112	NM_000057.2	335	Ctt/Ttt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0041893-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			354	159	420	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0041893-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			591	337	668	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088646	27088646	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041893-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			764	209	631	0	ENST00000324856.7:c.2255A>G	p.Tyr752Cys	p.Y752C	ENST00000324856	NM_006015.4	752	tAt/tGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249019	55249020	+	protein_altering_variant	In_Frame_Ins	INS	-	-	CTAACCCCT			P-0041893-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			808	338	598	0	ENST00000275493.2:c.2317_2318insCTAACCCCT	p.His773delinsProAsnProTyr	p.H773delinsPNPY	ENST00000275493	NM_005228.3	773	cac/cCTAACCCCTac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0041909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	74	433	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259206	36259206	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	119	526	0	ENST00000300305.3:c.285del	p.Asn96ThrfsTer26	p.N96Tfs*26	ENST00000300305		95	ccC/cc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206818	36206818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	41	610	3	ENST00000300305.3:c.694C>T	p.Arg232Trp	p.R232W	ENST00000300305		232	Cgg/Tgg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937704	36937704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	86	861	0	ENST00000361632.4:c.1034G>A	p.Arg345Lys	p.R345K	ENST00000361632		345	aGg/aAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959112	2959112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	126	836	0	ENST00000396946.4:c.2404C>A	p.His802Asn	p.H802N	ENST00000396946	NM_032415.4	802	Cac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0041941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	198	534	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197800	123197800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	101	187	0	ENST00000218089.9:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000218089	NM_001042749.1	642	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0042007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	154	702	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0042007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	41	437	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	66	476	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs79184941		P-0042007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	91	353	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0042007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	135	650	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998673	100998674	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0042007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	229	805	0	ENST00000325455.5:c.1128_1129del	p.Tyr377Ter	p.Y377*	ENST00000325455	NM_001202474.3	376	ctCTat/ctat																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371712	55371713	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	50	605	0	ENST00000297316.4:c.403dup	p.Tyr135LeufsTer27	p.Y135Lfs*27	ENST00000297316	NM_022454.3	134	-/T																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181807	56181807	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	39	369	0	ENST00000399503.3:c.4031C>A	p.Ser1344Ter	p.S1344*	ENST00000399503	NM_005921.1	1344	tCa/tAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092859	27092860	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TA	TA	-			P-0042007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	60	565	1	ENST00000324856.7:c.2878+2_2878+3del		p.X960_splice	ENST00000324856	NM_006015.4	960																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118361923	118361923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	23	289	0	ENST00000534358.1:c.4709C>T	p.Pro1570Leu	p.P1570L	ENST00000534358	NM_005933.3	1570	cCt/cTt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40359636	40359636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773533491		P-0042007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	52	615	0	ENST00000293328.3:c.2017C>T	p.Arg673Trp	p.R673W	ENST00000293328	NM_012448.3	673	Cgg/Tgg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589545	67589568	+	inframe_deletion	In_Frame_Del	DEL	TGTCAAAGAAGATAATATTGAAGC	TGTCAAAGAAGATAATATTGAAGC	-			P-0042007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	19	223	0	ENST00000274335.5:c.1311_1334del	p.Lys438_Val445del	p.K438_V445del	ENST00000274335		436	gtTGTCAAAGAAGATAATATTGAAGCt/gtt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87359983	87359983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	16	366	0	ENST00000277120.3:c.1291C>T	p.Leu431Phe	p.L431F	ENST00000277120		431	Ctc/Ttc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88649927	88649927	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0042009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	191	633	0	ENST00000372037.3:c.176T>A	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	59	tTa/tAa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56873486	56873486	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	47	564	0	ENST00000308159.5:c.2190A>T	p.Arg730Ser	p.R730S	ENST00000308159	NM_014669.4	730	agA/agT																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0042009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	358	773	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0042009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	19876	832	7	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
RAC2	5880	MSKCC	GRCh37	22	37622735	37622735	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	69	874	0	ENST00000249071.6:c.557A>C	p.Lys186Thr	p.K186T	ENST00000249071	NM_002872.4	186	aAg/aCg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467990	66467990	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0042009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	30	337	0	ENST00000273854.3:c.279T>G	p.Tyr93Ter	p.Y93*	ENST00000273854	NM_004439.5	93	taT/taG																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0042009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	142	399	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915029	131915029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	25	428	0	ENST00000265335.6:c.386T>C	p.Leu129Pro	p.L129P	ENST00000265335		129	cTg/cCg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665248	176665248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760426933		P-0042009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	92	390	0	ENST00000439151.2:c.3932G>A	p.Arg1311His	p.R1311H	ENST00000439151	NM_022455.4	1311	cGc/cAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522605	106522605	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	72	497	0	ENST00000359195.3:c.2582A>C	p.Asp861Ala	p.D861A	ENST00000359195	NM_002649.2	861	gAt/gCt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	155	526	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	150	516	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27097653	27097654	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0042078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	273	750	0	ENST00000324856.7:c.3245_3246dup	p.Gly1083TrpfsTer11	p.G1083Wfs*11	ENST00000324856	NM_006015.4	1081	aat/aaTGt																																																																														
RAB35	11021	MSKCC	GRCh37	12	120546229	120546230	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0042078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	221	749	0	ENST00000229340.5:c.94_95del	p.Thr32PhefsTer79	p.T32Ffs*79	ENST00000229340	NM_006861.6	32	ACt/t																																																																														
ABL1	25	MSKCC	GRCh37	9	133759828	133759837	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCGCCTCC	CTCCGCCTCC	-			P-0042078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	226	764	0	ENST00000318560.5:c.2151_2160del	p.Ser718AlafsTer55	p.S718Afs*55	ENST00000318560	NM_005157.4	717	tgCTCCGCCTCC/tg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs397517126		P-0042088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	329	614	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259446	55259446	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs397517128		P-0042088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	344	664	0	ENST00000275493.2:c.2504A>T	p.His835Leu	p.H835L	ENST00000275493	NM_005228.3	835	cAc/cTc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59821802	59821802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	37	486	1	ENST00000259008.2:c.2248G>A	p.Gly750Arg	p.G750R	ENST00000259008	NM_032043.2	750	Gga/Aga																																																																														
INSR	3643	MSKCC	GRCh37	19	7166351	7166352	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0042088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	64	932	1	ENST00000302850.5:c.1674_1675delinsTT	p.Val559Leu	p.V559L	ENST00000302850	NM_000208.2	558	gtGGta/gtTTta																																																																														
PAK7	0	MSKCC	GRCh37	20	9561280	9561280	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1197179795		P-0042088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	37	604	0	ENST00000353224.5:c.502C>A	p.Gln168Lys	p.Q168K	ENST00000353224	NM_177990.2	168	Caa/Aaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	79	230	0	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913485		P-0042110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	312	1073	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	143	329	0	ENST00000378444.4:c.4862del	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25978935	25978935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	138	445	0	ENST00000435504.4:c.988G>A	p.Glu330Lys	p.E330K	ENST00000435504		330	Gaa/Aaa																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778008	27778008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	181	567	0	ENST00000369163.2:c.157C>T	p.Arg53Cys	p.R53C	ENST00000369163	NM_003536.2	53	Cgc/Tgc																																																																														
EP300	2033	MSKCC	GRCh37	22	41572350	41572350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	198	809	0	ENST00000263253.7:c.4879C>T	p.Arg1627Trp	p.R1627W	ENST00000263253	NM_001429.3	1627	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	138	465	0				ENST00000310581	NM_198253.2																																																																																
AMER1	139285	MSKCC	GRCh37	X	63410571	63410571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	179	437	0	ENST00000330258.3:c.2596G>T	p.Val866Leu	p.V866L	ENST00000330258	NM_152424.3	866	Gtg/Ttg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939825	71939825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	576	953	1	ENST00000298229.2:c.452C>T	p.Ser151Phe	p.S151F	ENST00000298229	NM_001567.3	151	tCt/tTt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636664	176636664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	106	375	0	ENST00000439151.2:c.1264G>A	p.Glu422Lys	p.E422K	ENST00000439151	NM_022455.4	422	Gaa/Aaa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32814981	32814981	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0042110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	188	637	1	ENST00000354258.4:c.2084A>G	p.Glu695Gly	p.E695G	ENST00000354258	NM_000593.5	695	gAg/gGg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942853	44942853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0042110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			10	117	268	0	ENST00000377967.4:c.3433G>C	p.Gly1145Arg	p.G1145R	ENST00000377967	NM_021140.2	1145	Ggt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	315	274	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260214	16260214	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	41	602	2	ENST00000375759.3:c.7484del	p.Pro2495LeufsTer4	p.P2495Lfs*4	ENST00000375759	NM_015001.2	2493	agC/ag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143999	11143999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1171822727		P-0042115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	46	714	0	ENST00000344626.4:c.3580G>A	p.Gly1194Arg	p.G1194R	ENST00000344626	NM_003072.3	1194	Ggg/Agg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073874	8073875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	40	314	0	ENST00000377482.5:c.784dup	p.Ile262AsnfsTer14	p.I262Nfs*14	ENST00000377482	NM_018948.3	262	ata/aAta																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711995	89711995	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	61	120	0	ENST00000371953.3:c.613A>T	p.Met205Leu	p.M205L	ENST00000371953	NM_000314.4	205	Atg/Ttg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946469	71946469	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778999359		P-0042115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	65	900	1	ENST00000298229.2:c.2633G>A	p.Arg878His	p.R878H	ENST00000298229	NM_001567.3	878	cGc/cAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373872	118373872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	22	165	0	ENST00000534358.1:c.7265G>C	p.Gly2422Ala	p.G2422A	ENST00000534358	NM_005933.3	2422	gGa/gCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425062	49425070	+	inframe_deletion	In_Frame_Del	DEL	TGCTGAGTT	TGCTGAGTT	-			P-0042115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	62	1031	0	ENST00000301067.7:c.13418_13426del	p.Gln4473_Thr4476delinsPro	p.Q4473_T4476delinsP	ENST00000301067	NM_003482.3	4473	cAACTCAGCAct/cct																																																																														
MGA	23269	MSKCC	GRCh37	15	42003294	42003294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	48	414	0	ENST00000219905.7:c.2831G>T	p.Gly944Val	p.G944V	ENST00000219905	NM_001164273.1	944	gGc/gTc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17937713	17937713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752088869		P-0042115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	35	637	0	ENST00000458235.1:c.3214G>A	p.Glu1072Lys	p.E1072K	ENST00000458235	NM_000215.3	1072	Gag/Aag																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799602	72799602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	98	559	0	ENST00000325599.8:c.1567G>A	p.Gly523Arg	p.G523R	ENST00000325599	NM_018130.2	523	Gga/Aga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185044	32185044	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1380780475		P-0042115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	32	738	0	ENST00000375023.3:c.1625-1G>A		p.X542_splice	ENST00000375023	NM_004557.3	542																																																																															
RBM10	8241	MSKCC	GRCh37	X	47038804	47038804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	58	496	0	ENST00000329236.7:c.583del	p.Leu195CysfsTer36	p.L195Cfs*36	ENST00000329236	NM_001204466.1	194	Ccc/cc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313481	30313481	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	38	826	0	ENST00000262643.3:c.1081C>G	p.Gln361Glu	p.Q361E	ENST00000262643	NM_001238.2	361	Cag/Gag																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519874		P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	166	404	0	ENST00000356142.4:c.85C>A	p.Pro29Thr	p.P29T	ENST00000356142	NM_018890.3	29	Cct/Act																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468114	50468114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	10	631	0	ENST00000331340.3:c.1349G>A	p.Arg450His	p.R450H	ENST00000331340	NM_006060.4	450	cGc/cAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129833	55129833	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	17	463	0	ENST00000257290.5:c.368-1G>T		p.X123_splice	ENST00000257290	NM_006206.4	123																																																																															
PMAIP1	5366	MSKCC	GRCh37	18	57567440	57567440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	199	798	0	ENST00000316660.6:c.31C>T	p.Gln11Ter	p.Q11*	ENST00000316660	NM_021127.2	11	Caa/Taa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472652	88472652	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1007258350		P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	61	470	0	ENST00000360948.2:c.1903G>T	p.Asp635Tyr	p.D635Y	ENST00000360948	NM_001012338.2	635	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578395	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGTGGG			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	62	833	0	ENST00000269305.4:c.530_535dup	p.Pro177_His178dup	p.P177_H178dup	ENST00000269305	NM_001126112.2	177	cat/cCCCACCat																																																																														
AXL	558	MSKCC	GRCh37	19	41765793	41765793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	92	585	1	ENST00000301178.4:c.2669A>G	p.Gln890Arg	p.Q890R	ENST00000301178	NM_021913.4	890	cAg/cGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385144	41385144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	46	902	0	ENST00000373198.4:c.817G>T	p.Gly273Cys	p.G273C	ENST00000373198	NM_133170.3	273	Ggt/Tgt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191010	185191010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	48	938	0	ENST00000265026.3:c.1891C>T	p.Leu631Phe	p.L631F	ENST00000265026	NM_004721.4	631	Ctt/Ttt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156610	55156610	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	78	687	0	ENST00000257290.5:c.3011A>T	p.Glu1004Val	p.E1004V	ENST00000257290	NM_006206.4	1004	gAg/gTg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155570	56155570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	55	456	0	ENST00000399503.3:c.662A>G	p.Asp221Gly	p.D221G	ENST00000399503	NM_005921.1	221	gAt/gGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55270231	55270231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	81	881	0	ENST00000275493.2:c.3184G>C	p.Glu1062Gln	p.E1062Q	ENST00000275493	NM_005228.3	1062	Gaa/Caa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968109	68968109	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	21	579	0	ENST00000288368.4:c.1138G>T	p.Glu380Ter	p.E380*	ENST00000288368	NM_024870.2	380	Gaa/Taa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915880	127915880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	44	596	0	ENST00000373547.4:c.601G>C	p.Asp201His	p.D201H	ENST00000373547	NM_002721.4	201	Gat/Cat																																																																														
ATRX	546	MSKCC	GRCh37	X	76776281	76776281	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	16	368	0	ENST00000373344.5:c.7185G>C	p.Leu2395Phe	p.L2395F	ENST00000373344	NM_000489.3	2395	ttG/ttC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	88	602	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031979	10031979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	199	867	0	ENST00000330684.3:c.844G>T	p.Asp282Tyr	p.D282Y	ENST00000330684	NM_001134407.1	282	Gat/Tat																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223304	2223304	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	225	852	3	ENST00000398665.3:c.3415G>T	p.Glu1139Ter	p.E1139*	ENST00000398665	NM_032482.2	1139	Gag/Tag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097631	8097631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	16	241	0	ENST00000346208.3:c.13G>T	p.Ala5Ser	p.A5S	ENST00000346208		5	Gcg/Tcg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763221	59763221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	41	750	0	ENST00000259008.2:c.2881A>T	p.Ser961Cys	p.S961C	ENST00000259008	NM_032043.2	961	Agc/Tgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052875	180052875	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	114	816	0	ENST00000261937.6:c.1415G>T	p.Arg472Leu	p.R472L	ENST00000261937	NM_182925.4	472	cGt/cTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460502	8460502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	58	793	0	ENST00000356435.5:c.3784G>A	p.Asp1262Asn	p.D1262N	ENST00000356435		1262	Gat/Aat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390965	139390965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	162	1001	0	ENST00000277541.6:c.7226A>G	p.Gln2409Arg	p.Q2409R	ENST00000277541	NM_017617.3	2409	cAg/cGg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410306	63410306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	113	910	1	ENST00000330258.3:c.2861G>T	p.Gly954Val	p.G954V	ENST00000330258	NM_152424.3	954	gGg/gTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341907	8341909	+	frameshift_variant	Frame_Shift_Ins	INS	GTT	GTT	ATTT			P-0042154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	54	558	0	ENST00000356435.5:c.4733delinsAT	p.Thr1578AsnfsTer30	p.T1578Nfs*30	ENST00000356435		1577	aaAACt/aaAAATt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0042222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	420	983	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376302	118376302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	99	614	0	ENST00000534358.1:c.9695G>A	p.Arg3232Gln	p.R3232Q	ENST00000534358	NM_005933.3	3232	cGa/cAa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11118666	11118666	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	187	843	0	ENST00000344626.4:c.2090A>C	p.Asp697Ala	p.D697A	ENST00000344626	NM_003072.3	697	gAc/gCc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984350	201984350	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762671088		P-0042253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	58	484	1	ENST00000359651.3:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000359651		339	Cgg/Tgg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655488	67655488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	202	406	0	ENST00000264010.4:c.1351G>C	p.Asp451His	p.D451H	ENST00000264010	NM_006565.3	451	Gat/Cat																																																																														
CYLD	1540	MSKCC	GRCh37	16	50811826	50811826	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs886040872		P-0042279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	223	374	0	ENST00000398568.2:c.1103C>A	p.Ser368Ter	p.S368*	ENST00000398568	NM_001042412.1	368	tCa/tAa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30194766	30194766	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370180862		P-0042279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	245	523	1	ENST00000331968.5:c.379G>A	p.Asp127Asn	p.D127N	ENST00000331968	NM_002742.2	127	Gat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0042308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	210	472	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	156	480	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89839769	89839769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	232	794	1	ENST00000389301.3:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000389301	NM_000135.2	642	Gaa/Aaa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376262	225376262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	85	269	0	ENST00000264414.4:c.692C>T	p.Ser231Leu	p.S231L	ENST00000264414	NM_003590.4	231	tCa/tTa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1952853	1952853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	182	637	0	ENST00000382895.3:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000382895	NM_133330.2	646	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	122	337	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	270	547	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138528	2138528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	203	700	1	ENST00000219476.3:c.5341C>T	p.Pro1781Ser	p.P1781S	ENST00000219476	NM_000548.3	1781	Cca/Tca																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11924255	11924255	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	24	46	1	ENST00000353533.5:c.52A>T	p.Ser18Cys	p.S18C	ENST00000353533	NM_003010.3	18	Agc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604733	48604736	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	197	365	0	ENST00000342988.3:c.1558_1561del	p.Glu520HisfsTer16	p.E520Hfs*16	ENST00000342988	NM_005359.5	519	AAAGaa/aa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190732611	190732611	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	108	348	0	ENST00000441310.2:c.2429A>T	p.Asp810Val	p.D810V	ENST00000441310	NM_000534.4	810	gAt/gTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9520135	9520135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	96	349	1	ENST00000353224.5:c.2134del	p.Leu712SerfsTer2	p.L712Sfs*2	ENST00000353224	NM_177990.2	712	Ctc/tc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023163	31023163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	198	540	0	ENST00000375687.4:c.2648A>G	p.Glu883Gly	p.E883G	ENST00000375687	NM_015338.5	883	gAa/gGa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005378	150005378	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	246	519	0	ENST00000253339.5:c.847T>C	p.Tyr283His	p.Y283H	ENST00000253339		283	Tac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	72	349	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665024	138665024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	84	109	0	ENST00000330315.3:c.541G>T	p.Ala181Ser	p.A181S	ENST00000330315	NM_023067.3	181	Gcc/Tcc																																																																														
YAP1	10413	MSKCC	GRCh37	11	102100435	102100435	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	92	312	0	ENST00000282441.5:c.1279G>A	p.Asp427Asn	p.D427N	ENST00000282441	NM_001130145.2	427	Gat/Aat																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935294	36935294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	253	692	0	ENST00000361632.4:c.1433G>T	p.Arg478Met	p.R478M	ENST00000361632		478	aGg/aTg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983123	201983123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	300	579	0	ENST00000359651.3:c.972G>T	p.Met324Ile	p.M324I	ENST00000359651		324	atG/atT																																																																														
YAP1	10413	MSKCC	GRCh37	11	102100535	102100535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	146	421	0	ENST00000282441.5:c.1379G>T	p.Gly460Val	p.G460V	ENST00000282441	NM_001130145.2	460	gGa/gTa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	475158	475158	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	73	513	0	ENST00000399788.2:c.479C>G	p.Ser160Ter	p.S160*	ENST00000399788	NM_001042603.1	160	tCa/tGa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244406	46244406	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	157	395	0	ENST00000334344.6:c.2500C>G	p.Gln834Glu	p.Q834E	ENST00000334344	NM_152641.2	834	Caa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577093	7577113	+	inframe_deletion	In_Frame_Del	DEL	CGGTCTCTCCCAGGACAGGCA	CGGTCTCTCCCAGGACAGGCA	-			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	442	600	0	ENST00000269305.4:c.825_845del	p.Cys275_Arg282delinsTrp	p.C275_R282delinsW	ENST00000269305	NM_001126112.2	275	tgTGCCTGTCCTGGGAGAGACCGg/tgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602620	10602621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	197	668	0	ENST00000171111.5:c.957_958insG	p.Arg320AlafsTer30	p.R320Afs*30	ENST00000171111	NM_203500.1	319	-/G																																																																														
AXL	558	MSKCC	GRCh37	19	41726594	41726594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	241	607	0	ENST00000301178.4:c.139G>T	p.Ala47Ser	p.A47S	ENST00000301178	NM_021913.4	47	Gcc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112137040	112137040	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755437577		P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	115	338	0	ENST00000257430.4:c.794G>A	p.Gly265Glu	p.G265E	ENST00000257430	NM_000038.5	265	gGa/gAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163407	32163407	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs45458498		P-0042327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	297	637	0	ENST00000375023.3:c.5819G>T	p.Arg1940Leu	p.R1940L	ENST00000375023	NM_004557.3	1940	cGc/cTc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0042329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	51	386	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398282	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0042329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	42	487	0	ENST00000256078.4:c.37_38delinsTT	p.Gly13Phe	p.G13F	ENST00000256078	NM_033360.2	13	GGc/TTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535353	187535353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747181352		P-0042329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	18	537	0	ENST00000441802.2:c.9221C>T	p.Pro3074Leu	p.P3074L	ENST00000441802	NM_005245.3	3074	cCa/cTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039686	47039686	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	112	973	0	ENST00000329236.7:c.904G>T	p.Glu302Ter	p.E302*	ENST00000329236	NM_001204466.1	302	Gag/Tag																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480641	50480641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	17	441	0	ENST00000394963.4:c.511G>T	p.Ala171Ser	p.A171S	ENST00000394963	NM_003076.4	171	Gcc/Tcc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992900	72992900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	56	791	0	ENST00000268489.5:c.1145G>T	p.Gly382Val	p.G382V	ENST00000268489	NM_006885.3	382	gGc/gTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29663898	29663901	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0042329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	28	486	0	ENST00000358273.4:c.6395_6398del	p.Ser2132CysfsTer17	p.S2132Cfs*17	ENST00000358273	NM_001042492.2	2131	caCTCT/ca																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52719886	52719886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	52	840	0	ENST00000322088.6:c.1098G>T	p.Leu366Phe	p.L366F	ENST00000322088	NM_014225.5	366	ttG/ttT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913523	39913523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	48	696	0	ENST00000378444.4:c.4805G>T	p.Gly1602Val	p.G1602V	ENST00000378444	NM_001123385.1	1602	gGc/gTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs121913476		P-0042334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	58	409	0	ENST00000358487.5:c.1647T>G	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaG																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436306	110436306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	11	171	0	ENST00000375856.3:c.2095G>A	p.Ala699Thr	p.A699T	ENST00000375856	NM_003749.2	699	Gcc/Acc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519739		P-0042334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	75	386	1	ENST00000342988.3:c.1051G>C	p.Asp351His	p.D351H	ENST00000342988	NM_005359.5	351	Gat/Cat																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484858	57485003	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTTTGTGGAGTGACCGCCCACCCCCTGCGCTTGCCCAGGAGGCCCTGGTCTGCACTGTTTATAGAGAAGAACCCCGTGCAAGCATTCCAGACCCCTGGCCGAAAGCGCGCTTCTCCCAAGCATTCACACGGCCTCCCTTCTTGT	AGGTTTGTGGAGTGACCGCCCACCCCCTGCGCTTGCCCAGGAGGCCCTGGTCTGCACTGTTTATAGAGAAGAACCCCGTGCAAGCATTCCAGACCCCTGGCCGAAAGCGCGCTTCTCCCAAGCATTCACACGGCCTCCCTTCTTGT	-			P-0042334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	56	384	0	ENST00000371085.3:c.839+1_840-1del		p.X280_splice	ENST00000371085	NM_000516.4	280																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485136	57485387	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	-			P-0042334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	32	257	0	ENST00000371085.3:c.970+1_971-1del		p.X324_splice	ENST00000371085	NM_000516.4	324																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485456	57485736	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	-			P-0042334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	52	316	1	ENST00000371085.3:c.1038+1_1039-1del		p.X346_splice	ENST00000371085	NM_000516.4	346																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443583	49443583	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0042334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	104	508	0	ENST00000301067.7:c.3788C>G	p.Ser1263Ter	p.S1263*	ENST00000301067	NM_003482.3	1263	tCa/tGa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362593	118362594	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0042334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	102	342	0	ENST00000534358.1:c.4955_4956del	p.Thr1652SerfsTer41	p.T1652Sfs*41	ENST00000534358	NM_005933.3	1652	ACa/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7578477	7578523	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTT	GGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTT	-			P-0042334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	124	570	0	ENST00000269305.4:c.407_453del	p.Gln136ProfsTer29	p.Q136Pfs*29	ENST00000269305	NM_001126112.2	136	cAACTGGCCAAGACCTGCCCTGTGCAGCTGTGGGTTGATTCCACACCC/c																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125869	47125869	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	31	132	0	ENST00000409792.3:c.5401del	p.Ile1801Ter	p.I1801*	ENST00000409792	NM_014159.6	1801	Ata/ta																																																																														
WHSC1	0	MSKCC	GRCh37	4	1961447	1961447	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771867435		P-0042334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	41	379	2	ENST00000382895.3:c.3235G>A	p.Ala1079Thr	p.A1079T	ENST00000382895	NM_133330.2	1079	Gcc/Acc																																																																														
MYC	4609	MSKCC	GRCh37	8	128751258	128751258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	49	312	0	ENST00000377970.2:c.795C>G	p.Ser265Arg	p.S265R	ENST00000377970	NM_002467.4	265	agC/agG																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797253	135797253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	52	240	0	ENST00000298552.3:c.616C>T	p.His206Tyr	p.H206Y	ENST00000298552	NM_001162426.1	206	Cat/Tat																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196080	138196080	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	160	340	0	ENST00000237289.4:c.394G>T	p.Glu132Ter	p.E132*	ENST00000237289	NM_001270507.1	132	Gaa/Taa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625164	69625164	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115452181		P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	41	851	0	ENST00000334134.2:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000334134	NM_005247.2	210	cGg/cAg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600369	10600369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	289	850	0	ENST00000171111.5:c.1486G>T	p.Glu496Ter	p.E496*	ENST00000171111	NM_203500.1	496	Gag/Tag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50917023	50917023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145473716		P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	47	692	0	ENST00000440232.2:c.2275G>A	p.Val759Ile	p.V759I	ENST00000440232	NM_002691.3	759	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	274	936	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449727	8449727	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs772305581		P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	174	494	0	ENST00000356435.5:c.3986C>T	p.Pro1329Leu	p.P1329L	ENST00000356435		1329	cCg/cTg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076745	72076745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	98	560	0	ENST00000357731.5:c.752C>A	p.Pro251Gln	p.P251Q	ENST00000357731	NM_173808.2	251	cCg/cAg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12627284	12627284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	111	414	0	ENST00000251849.4:c.1432G>A	p.Glu478Lys	p.E478K	ENST00000251849	NM_002880.3	478	Gaa/Aaa																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612754	228612754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	284	698	0	ENST00000366696.1:c.273G>A	p.Met91Ile	p.M91I	ENST00000366696	NM_003493.2	91	atG/atA																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682371	52682371	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	80	300	0	ENST00000394830.3:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000394830	NM_018313.4	268	Caa/Taa																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519036	66519036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	49	431	0	ENST00000358598.2:c.317C>T	p.Thr106Met	p.T106M	ENST00000358598	NM_212471.2	106	aCg/aTg																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699514	117699514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	33	361	0	ENST00000369458.3:c.127G>T	p.Ala43Ser	p.A43S	ENST00000369458	NM_024626.3	43	Gcc/Tcc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162748370	162748370	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	123	342	0	ENST00000367921.3:c.2284G>T	p.Gly762Cys	p.G762C	ENST00000367921	NM_006182.2	762	Ggc/Tgc																																																																														
RFWD2	0	MSKCC	GRCh37	1	175916375	175916375	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	98	331	0	ENST00000367669.3:c.2134G>T	p.Glu712Ter	p.E712*	ENST00000367669	NM_022457.5	712	Gag/Tag																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607728	46607728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	152	771	0	ENST00000263734.3:c.1917G>C	p.Trp639Cys	p.W639C	ENST00000263734	NM_001430.4	639	tgG/tgC																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356293	66356293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	51	516	0	ENST00000273854.3:c.1204G>T	p.Ala402Ser	p.A402S	ENST00000273854	NM_004439.5	402	Gca/Tca																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361213	66361213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	76	349	0	ENST00000273854.3:c.959G>T	p.Gly320Val	p.G320V	ENST00000273854	NM_004439.5	320	gGc/gTc																																																																														
FYN	2534	MSKCC	GRCh37	6	112025243	112025244	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	178	590	1	ENST00000368678.4:c.505_506delinsAA	p.Pro169Lys	p.P169K	ENST00000368678		169	CCa/AAa																																																																														
CDK6	1021	MSKCC	GRCh37	7	92300822	92300822	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	68	436	1	ENST00000265734.4:c.565G>T	p.Glu189Ter	p.E189*	ENST00000265734	NM_001259.6	189	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945075	151945075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	31	430	0	ENST00000262189.6:c.2444C>T	p.Thr815Ile	p.T815I	ENST00000262189	NM_170606.2	815	aCt/aTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485295	8485295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	130	482	0	ENST00000356435.5:c.3085G>T	p.Val1029Leu	p.V1029L	ENST00000356435		1029	Gta/Tta																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499700	8499700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	148	532	0	ENST00000356435.5:c.2269G>A	p.Gly757Ser	p.G757S	ENST00000356435		757	Ggt/Agt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	302	421	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	85	418	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	85	418	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	85	418	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032098	26032098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773862626		P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	99	386	0	ENST00000244661.2:c.191G>A	p.Arg64Gln	p.R64Q	ENST00000244661	NM_003537.3	64	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711873	89711873	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs587781784		P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	90	270	0	ENST00000371953.3:c.493-2A>G		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156830734	156830734	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	13	73	0	ENST00000524377.1:c.8G>C	p.Arg3Pro	p.R3P	ENST00000524377	NM_002529.3	3	cGa/cCa																																																																														
ATM	472	MSKCC	GRCh37	11	108236197	108236197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	124	462	0	ENST00000278616.4:c.9133C>T	p.Leu3045Phe	p.L3045F	ENST00000278616	NM_000051.3	3045	Ctc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578543	7578546	+	frameshift_variant	Frame_Shift_Del	DEL	GGCA	GGCA	-			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	250	730	0	ENST00000269305.4:c.384_387del	p.Ala129SerfsTer40	p.A129Sfs*40	ENST00000269305	NM_001126112.2	128	ccTGCC/cc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271364	18271364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	95	554	0	ENST00000222254.8:c.406G>A	p.Glu136Lys	p.E136K	ENST00000222254	NM_005027.3	136	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76940056	76940056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	70	479	0	ENST00000373344.5:c.692G>A	p.Cys231Tyr	p.C231Y	ENST00000373344	NM_000489.3	231	tGt/tAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	55	301	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0042477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			165	15	112	1				ENST00000310581	NM_198253.2																																																																																
IGF1R	3480	MSKCC	GRCh37	15	99500304	99500304	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45512296		P-0042477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	40	436	1	ENST00000268035.6:c.3737G>A	p.Arg1246His	p.R1246H	ENST00000268035	NM_000875.3	1246	cGc/cAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137186	64137186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	35	322	0	ENST00000334205.4:c.1618G>T	p.Asp540Tyr	p.D540Y	ENST00000334205	NM_003942.2	540	Gac/Tac																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181346	185181346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	33	257	0	ENST00000265026.3:c.1287G>C	p.Trp429Cys	p.W429C	ENST00000265026	NM_004721.4	429	tgG/tgC																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106524636	106524636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	19	201	0	ENST00000359195.3:c.2797G>T	p.Ala933Ser	p.A933S	ENST00000359195	NM_002649.2	933	Gca/Tca																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039395	47039395	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			634	62	503	0	ENST00000329236.7:c.787C>T	p.Gln263Ter	p.Q263*	ENST00000329236	NM_001204466.1	263	Caa/Taa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411870	63411870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			840	62	709	0	ENST00000330258.3:c.1297C>A	p.His433Asn	p.H433N	ENST00000330258	NM_152424.3	433	Cac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55220295	55220295	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	1471	911	0	ENST00000275493.2:c.685A>T	p.Ser229Cys	p.S229C	ENST00000275493	NM_005228.3	229	Agt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245440	46245440	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	83	484	0	ENST00000334344.6:c.3536del	p.Asn1179IlefsTer9	p.N1179Ifs*9	ENST00000334344	NM_152641.2	1178	ccA/cc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0042533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	75	698	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141528	11141528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	44	722	0	ENST00000344626.4:c.3505G>T	p.Asp1169Tyr	p.D1169Y	ENST00000344626	NM_003072.3	1169	Gac/Tac																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	189	615	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483877	88483877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	75	664	1	ENST00000360948.2:c.1693G>A	p.Asp565Asn	p.D565N	ENST00000360948	NM_001012338.2	565	Gac/Aac																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146487	185146487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	45	471	0	ENST00000265026.3:c.118C>T	p.Pro40Ser	p.P40S	ENST00000265026	NM_004721.4	40	Ccc/Tcc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299856	15299856	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1188038977		P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	167	851	1	ENST00000263388.2:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000263388	NM_000435.2	441	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609846	117609846	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1442895655		P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	85	575	1	ENST00000368508.3:c.6853G>A	p.Glu2285Lys	p.E2285K	ENST00000368508	NM_002944.2	2285	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112177484	112177484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	89	328	0	ENST00000257430.4:c.6193C>T	p.Pro2065Ser	p.P2065S	ENST00000257430	NM_000038.5	2065	Ccc/Tcc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37059090	37059090	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs63750144		P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	56	414	0	ENST00000231790.2:c.884G>A	p.Ser295Asn	p.S295N	ENST00000231790	NM_000249.3	295	aGt/aAt																																																																														
MDM2	4193	MSKCC	GRCh37	12	69230522	69230522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	37	340	1	ENST00000462284.1:c.911C>T	p.Ser304Phe	p.S304F	ENST00000462284	NM_002392.5	304	tCc/tTc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793398	242793398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	88	886	0	ENST00000334409.5:c.679G>A	p.Asp227Asn	p.D227N	ENST00000334409	NM_005018.2	227	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	136	474	0				ENST00000310581	NM_198253.2																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18719947	18719947	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1437834329		P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	67	443	0	ENST00000266497.5:c.3844C>T	p.His1282Tyr	p.H1282Y	ENST00000266497		1282	Cat/Tat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690570	88690570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	54	433	1	ENST00000360948.2:c.460G>A	p.Glu154Lys	p.E154K	ENST00000360948	NM_001012338.2	154	Gaa/Aaa																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117753470	117753470	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1248358199		P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	55	530	0	ENST00000369458.3:c.8C>T	p.Ser3Phe	p.S3F	ENST00000369458	NM_024626.3	3	tCc/tTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466287	120466287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	126	450	0	ENST00000256646.2:c.4832C>T	p.Pro1611Leu	p.P1611L	ENST00000256646	NM_024408.3	1611	cCt/cTt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63661930	63661930	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749069080		P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	54	333	0	ENST00000279873.7:c.34C>T	p.Pro12Ser	p.P12S	ENST00000279873	NM_032199.2	12	Ccg/Tcg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	364561	364561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	71	832	0	ENST00000262320.3:c.1001C>T	p.Ser334Phe	p.S334F	ENST00000262320	NM_003502.3	334	tCc/tTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2110784	2110786	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	84	804	0	ENST00000219476.3:c.1093_1095del	p.Ile365del	p.I365del	ENST00000219476	NM_000548.3	363	aaCATc/aac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220126	36220126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	183	788	0	ENST00000222270.7:c.4846G>A	p.Ala1616Thr	p.A1616T	ENST00000222270	NM_014727.1	1616	Gcg/Acg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220138	36220138	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	182	770	0	ENST00000222270.7:c.4858G>T	p.Glu1620Ter	p.E1620*	ENST00000222270	NM_014727.1	1620	Gag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224168	36224168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1442182686		P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	180	713	0	ENST00000222270.7:c.6718C>T	p.Leu2240Phe	p.L2240F	ENST00000222270	NM_014727.1	2240	Ctc/Ttc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750491	41750491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	59	567	1	ENST00000226382.2:c.137C>T	p.Pro46Leu	p.P46L	ENST00000226382	NM_003924.3	46	cCg/cTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515168	106515168	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	65	446	0	ENST00000359195.3:c.2311C>G	p.Leu771Val	p.L771V	ENST00000359195	NM_002649.2	771	Ctt/Gtt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021667	69021667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	53	471	0	ENST00000288368.4:c.2955G>A	p.Met985Ile	p.M985I	ENST00000288368	NM_024870.2	985	atG/atA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69050648	69050648	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	51	351	0	ENST00000288368.4:c.3985-2A>G		p.X1329_splice	ENST00000288368	NM_024870.2	1329																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465629	8465629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	53	482	0	ENST00000356435.5:c.3551G>A	p.Arg1184Lys	p.R1184K	ENST00000356435		1184	aGa/aAa																																																																														
XIAP	331	MSKCC	GRCh37	X	123034413	123034414	+	missense_variant	Missense_Mutation	DNP	GA	GA	AC			P-0042585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	52	464	1	ENST00000355640.3:c.1170_1171delinsAC	p.Lys391Gln	p.K391Q	ENST00000355640		390	aaGAaa/aaACaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782177		P-0042593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	366	690	1	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024877	31024888	+	inframe_deletion	In_Frame_Del	DEL	TAATTATTCCTC	TAATTATTCCTC	-			P-0042593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	127	567	0	ENST00000375687.4:c.4364_4375del	p.Asn1455_Ser1458del	p.N1455_S1458del	ENST00000375687	NM_015338.5	1454	ttTAATTATTCCTCt/ttt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827946	40827946	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	33	707	0	ENST00000373198.4:c.2482A>G	p.Thr828Ala	p.T828A	ENST00000373198	NM_133170.3	828	Acc/Gcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	79	478	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472554	88472554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	121	653	0	ENST00000360948.2:c.2001G>T	p.Met667Ile	p.M667I	ENST00000360948	NM_001012338.2	667	atG/atT																																																																														
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690940		P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	218	738	0	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11269480	11269480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	47	592	0	ENST00000361445.4:c.3690G>T	p.Leu1230Phe	p.L1230F	ENST00000361445	NM_004958.3	1230	ttG/ttT																																																																														
ATM	472	MSKCC	GRCh37	11	108138042	108138042	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	136	508	0	ENST00000278616.4:c.2611G>T	p.Glu871Ter	p.E871*	ENST00000278616	NM_000051.3	871	Gaa/Taa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154395	2154395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	72	981	0	ENST00000434045.2:c.533C>T	p.Ser178Phe	p.S178F	ENST00000434045	NM_001127598.1	178	tCc/tTc																																																																														
WT1	7490	MSKCC	GRCh37	11	32413581	32413581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	92	487	0	ENST00000332351.3:c.1369C>A	p.Gln457Lys	p.Q457K	ENST00000332351	NM_024426.4	457	Cag/Aag																																																																														
ATM	472	MSKCC	GRCh37	11	108236234	108236234	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	59	548	0	ENST00000278616.4:c.9170G>T	p.Ter3057LeuextTer29	p.*3057Lext*29	ENST00000278616	NM_000051.3	3057	tGa/tTa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687337	37687337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778522020		P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	56	605	0	ENST00000447079.4:c.4241C>T	p.Pro1414Leu	p.P1414L	ENST00000447079	NM_015083.1	1414	cCg/cTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954223	17954223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	137	804	2	ENST00000458235.1:c.386T>C	p.Leu129Pro	p.L129P	ENST00000458235	NM_000215.3	129	cTt/cCt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505581	25505581	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	82	841	0	ENST00000264709.3:c.178-1G>C		p.X60_splice	ENST00000264709	NM_175629.2	60																																																																															
INPP4B	8821	MSKCC	GRCh37	4	142949975	142949975	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	97	585	0	ENST00000262992.4:c.2735A>T	p.Tyr912Phe	p.Y912F	ENST00000262992	NM_001101669.1	912	tAc/tTc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045913	143045913	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	80	405	0	ENST00000262992.4:c.1721A>T	p.Glu574Val	p.E574V	ENST00000262992	NM_001101669.1	574	gAg/gTg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635120	87635120	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0042657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	39	332	0	ENST00000277120.3:c.2173-1G>T		p.X725_splice	ENST00000277120		725																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	202	413	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	24	351	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656914	45656914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	242	766	0	ENST00000407780.3:c.242G>A	p.Arg81Gln	p.R81Q	ENST00000407780	NM_001283052.1	81	cGg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439918	56439918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367688879		P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	195	675	0	ENST00000407977.2:c.674G>A	p.Arg225His	p.R225H	ENST00000407977		225	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	216	684	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101194	41101194	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200107921		P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	168	600	1	ENST00000373198.4:c.1162C>A	p.His388Asn	p.H388N	ENST00000373198	NM_133170.3	388	Cat/Aat																																																																														
MDM4	4194	MSKCC	GRCh37	1	204511986	204511986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	101	349	0	ENST00000367182.3:c.586G>T	p.Ala196Ser	p.A196S	ENST00000367182	NM_001278516.1	196	Gct/Tct																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724439	112724439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	154	505	0	ENST00000369452.4:c.323C>T	p.Ser108Phe	p.S108F	ENST00000369452	NM_007373.3	108	tCc/tTc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022708	12022708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	152	503	0	ENST00000396373.4:c.814C>T	p.Pro272Ser	p.P272S	ENST00000396373	NM_001987.4	272	Ccc/Tcc																																																																														
MGA	23269	MSKCC	GRCh37	15	42041569	42041569	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs370986027		P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	180	488	0	ENST00000219905.7:c.5764A>G	p.Ile1922Val	p.I1922V	ENST00000219905	NM_001164273.1	1922	Ata/Gta																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347661	89347661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	164	746	0	ENST00000301030.4:c.5289G>C	p.Arg1763Ser	p.R1763S	ENST00000301030	NM_001256183.1	1763	agG/agC																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696617	47696617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	172	385	0	ENST00000347630.2:c.331G>A	p.Gly111Arg	p.G111R	ENST00000347630	NM_001007230.1	111	Gga/Aga																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376793	31376793	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs776562712		P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	156	504	0	ENST00000328111.2:c.788G>A	p.Trp263Ter	p.W263*	ENST00000328111	NM_006892.3	263	tGg/tAg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170015162	170015162	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368665283		P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	440	553	3	ENST00000295797.4:c.1568G>A	p.Arg523Gln	p.R523Q	ENST00000295797	NM_002740.5	523	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522454	187522475	+	frameshift_variant	Frame_Shift_Del	DEL	TACATGACAACCGCATGCGTGG	TACATGACAACCGCATGCGTGG	-			P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	102	541	0	ENST00000441802.2:c.11588_11609del	p.Ser3863LeufsTer49	p.S3863Lfs*49	ENST00000441802	NM_005245.3	3863	tCCACGCATGCGGTTGTCATGTAt/tt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554910	187554911	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0042679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	155	404	0	ENST00000441802.2:c.4250_4251del	p.Leu1417ArgfsTer34	p.L1417Rfs*34	ENST00000441802	NM_005245.3	1417	cTT/c																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	13	203	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	22	591	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0042804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	65	344	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7579327	7579327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	133	616	0	ENST00000269305.4:c.360G>T	p.Lys120Asn	p.K120N	ENST00000269305	NM_001126112.2	120	aaG/aaT																																																																														
RB1	5925	MSKCC	GRCh37	13	49030378	49030378	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0042804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	22	248	0	ENST00000267163.4:c.1853C>G	p.Ser618Ter	p.S618*	ENST00000267163	NM_000321.2	618	tCa/tGa																																																																														
AR	367	MSKCC	GRCh37	X	66943643	66943643	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691681		P-0042804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	97	528	0	ENST00000374690.3:c.2723T>A	p.Leu908His	p.L908H	ENST00000374690	NM_000044.3	908	cTt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	36	558	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0042909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	98	592	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239124	98239124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745669155		P-0042909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	11	338	0	ENST00000331920.6:c.1519G>A	p.Ala507Thr	p.A507T	ENST00000331920	NM_000264.3	507	Gct/Act																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046023	180046023	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1396816704		P-0042909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	23	64	1	ENST00000261937.6:c.2848G>A	p.Ala950Thr	p.A950T	ENST00000261937	NM_182925.4	950	Gcg/Acg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120484164	120484164	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs782704056		P-0042909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	23	410	0	ENST00000256646.2:c.2966A>G	p.Asn989Ser	p.N989S	ENST00000256646	NM_024408.3	989	aAt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	42	402	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117365	115117365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	40	385	0	ENST00000257566.3:c.809C>A	p.Thr270Lys	p.T270K	ENST00000257566	NM_016569.3	270	aCa/aAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133250256	133250256	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745356467		P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	58	611	1	ENST00000320574.5:c.1264C>T	p.His422Tyr	p.H422Y	ENST00000320574	NM_006231.2	422	Cat/Tat																																																																														
TBX3	6926	MSKCC	GRCh37	12	115110043	115110043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	98	657	1	ENST00000257566.3:c.1835C>T	p.Ala612Val	p.A612V	ENST00000257566	NM_016569.3	612	gCg/gTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29554598	29554598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	19	309	0	ENST00000358273.4:c.2383C>G	p.Pro795Ala	p.P795A	ENST00000358273	NM_001042492.2	795	Cca/Gca																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430928	181430928	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1233857840		P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	76	675	1	ENST00000325404.1:c.780C>A	p.His260Gln	p.H260Q	ENST00000325404	NM_003106.3	260	caC/caA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393412	139393412	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs780257585		P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	147	752	1	ENST00000277541.6:c.6119A>G	p.Asn2040Ser	p.N2040S	ENST00000277541	NM_017617.3	2040	aAt/aGt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045190	47045190	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0042996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	71	579	0	ENST00000329236.7:c.2196+1G>C		p.X732_splice	ENST00000329236	NM_001204466.1	732																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	69	386	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0043062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	39	551	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	113	438	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	80	323	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0043062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	19	649	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0043064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	629	688	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143130105	143130105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	215	177	0	ENST00000262992.4:c.911G>A	p.Cys304Tyr	p.C304Y	ENST00000262992	NM_001101669.1	304	tGt/tAt																																																																														
IGF1	3479	MSKCC	GRCh37	12	102874144	102874145	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0043064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	118	122	0	ENST00000307046.8:c.15_16delinsAT	p.Ser5_Ser6delinsArgCys	p.S5_S6delinsRC	ENST00000307046	NM_001111285.1	5	agCAgt/agATgt																																																																														
EP300	2033	MSKCC	GRCh37	22	41568569	41568569	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	299	210	0	ENST00000263253.7:c.4519G>C	p.Asp1507His	p.D1507H	ENST00000263253	NM_001429.3	1507	Gat/Cat																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169940528	169940528	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	757	706	0	ENST00000295797.4:c.71A>G	p.His24Arg	p.H24R	ENST00000295797	NM_002740.5	24	cAc/cGc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280053	66280053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	197	222	0	ENST00000273854.3:c.1636G>A	p.Ala546Thr	p.A546T	ENST00000273854	NM_004439.5	546	Gca/Aca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509862	187509862	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs775695644		P-0043064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	325	367	1	ENST00000441802.2:c.13651G>T	p.Ala4551Ser	p.A4551S	ENST00000441802	NM_005245.3	4551	Gcc/Tcc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200097	138200097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	961	504	0	ENST00000237289.4:c.1515C>A	p.His505Gln	p.H505Q	ENST00000237289	NM_001270507.1	505	caC/caA																																																																														
PARK2	0	MSKCC	GRCh37	6	162394339	162394339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	275	269	0	ENST00000366898.1:c.729C>A	p.Asp243Glu	p.D243E	ENST00000366898	NM_004562.2	243	gaC/gaA																																																																														
HGF	3082	MSKCC	GRCh37	7	81386602	81386602	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	210	170	0	ENST00000222390.5:c.385A>G	p.Ile129Val	p.I129V	ENST00000222390	NM_000601.4	129	Atc/Gtc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250200	110250200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	701	766	0	ENST00000374672.4:c.475G>T	p.Asp159Tyr	p.D159Y	ENST00000374672	NM_004235.4	159	Gac/Tac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44879855	44879857	+	stop_gained,frameshift_variant,splice_region_variant	Nonsense_Mutation	DEL	GGC	GGC	AA			P-0043064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	173	66	1	ENST00000377967.4:c.444_446delinsAA	p.Trp148Ter	p.W148*	ENST00000377967	NM_021140.2	148	tgGGCa/tgAAa																																																																														
WT1	7490	MSKCC	GRCh37	11	32456764	32456764	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	43	581	0	ENST00000332351.3:c.128T>A	p.Leu43Ter	p.L43*	ENST00000332351	NM_024426.4	43	tTa/tAa																																																																														
CCND1	595	MSKCC	GRCh37	11	69457998	69457998	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866931401		P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	152	393	1	ENST00000227507.2:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000227507	NM_053056.2	133	cGg/cAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953270	81953270	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	82	297	0	ENST00000359376.3:c.2235+1G>T		p.X745_splice	ENST00000359376	NM_002661.3	745																																																																															
TP53	7157	MSKCC	GRCh37	17	7573986	7573986	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	392	830	0	ENST00000269305.4:c.1041del	p.Leu348TrpfsTer22	p.L348Wfs*22	ENST00000269305	NM_001126112.2	347	gcC/gc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs587782018		P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	266	659	0	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602911	10602911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	40	922	1	ENST00000171111.5:c.667C>A	p.Leu223Met	p.L223M	ENST00000171111	NM_203500.1	223	Ctg/Atg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610630	10610630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	279	714	0	ENST00000171111.5:c.80C>T	p.Ala27Val	p.A27V	ENST00000171111	NM_203500.1	27	gCa/gTa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225362513	225362513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	192	449	0	ENST00000264414.4:c.1664G>A	p.Gly555Asp	p.G555D	ENST00000264414	NM_003590.4	555	gGt/gAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827960	40827960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	305	530	0	ENST00000373198.4:c.2468C>A	p.Ala823Asp	p.A823D	ENST00000373198	NM_133170.3	823	gCc/gAc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49939821	49939821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	247	826	1	ENST00000296474.3:c.1222C>T	p.Pro408Ser	p.P408S	ENST00000296474	NM_002447.2	408	Ccc/Tcc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49939833	49939833	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	262	849	0	ENST00000296474.3:c.1210C>G	p.Pro404Ala	p.P404A	ENST00000296474	NM_002447.2	404	Ccc/Gcc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755583	57755583	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs372211010		P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	53	634	0	ENST00000274289.3:c.204G>T	p.Glu68Asp	p.E68D	ENST00000274289	NM_006622.3	68	gaG/gaT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956607	93956607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	101	389	0	ENST00000369303.4:c.2629C>A	p.Arg877Ser	p.R877S	ENST00000369303	NM_004440.3	877	Cgt/Agt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704571	117704571	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	119	438	0	ENST00000368508.3:c.2405A>T	p.Tyr802Phe	p.Y802F	ENST00000368508	NM_002944.2	802	tAc/tTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81392072	81392072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	112	316	0	ENST00000222390.5:c.205C>A	p.Gln69Lys	p.Q69K	ENST00000222390	NM_000601.4	69	Caa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913351		P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	322	445	0	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151902253	151902253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	97	373	0	ENST00000262189.6:c.3899G>A	p.Arg1300Lys	p.R1300K	ENST00000262189	NM_170606.2	1300	aGa/aAa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133867	38133867	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	1239	912	0	ENST00000317025.8:c.4019A>G	p.Asp1340Gly	p.D1340G	ENST00000317025	NM_023034.1	1340	gAc/gGc																																																																														
NBN	4683	MSKCC	GRCh37	8	90993102	90993103	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	249	289	1	ENST00000265433.3:c.339_340delinsTT	p.Leu113_Val114delinsPhePhe	p.L113_V114delinsFF	ENST00000265433	NM_002485.4	113	ttGGtt/ttTTtt																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128347870	128347870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	211	700	0	ENST00000265960.3:c.635G>T	p.Trp212Leu	p.W212L	ENST00000265960	NM_001006617.1	212	tGg/tTg																																																																														
AR	367	MSKCC	GRCh37	X	66941720	66941720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	121	626	1	ENST00000374690.3:c.2364G>A	p.Met788Ile	p.M788I	ENST00000374690	NM_000044.3	788	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0043089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	71	411	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627860	14627860	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	82	681	0	ENST00000254322.2:c.212-2A>G		p.X71_splice	ENST00000254322	NM_006145.1	71																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449522	31449522	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	35	181	1	ENST00000344624.3:c.2687C>G	p.Ala896Gly	p.A896G	ENST00000344624		896	gCc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	89	416	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RAD52	5893	MSKCC	GRCh37	12	1040408	1040408	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370272002		P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	51	616	0	ENST00000358495.3:c.164G>A	p.Arg55His	p.R55H	ENST00000358495	NM_134424.2	55	cGc/cAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	165	893	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504371	8504371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	136	540	0	ENST00000356435.5:c.1712G>T	p.Arg571Met	p.R571M	ENST00000356435		571	aGg/aTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030817	69030817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	96	409	0	ENST00000288368.4:c.3359C>T	p.Ser1120Phe	p.S1120F	ENST00000288368	NM_024870.2	1120	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532780	187532780	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1200316021		P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	103	561	0	ENST00000441802.2:c.9613G>T	p.Gly3205Cys	p.G3205C	ENST00000441802	NM_005245.3	3205	Ggc/Tgc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459655	149459655	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	158	715	0	ENST00000286301.3:c.552del	p.Lys185ArgfsTer2	p.K185Rfs*2	ENST00000286301	NM_005211.3	184	agG/ag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371843	55371843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	32	177	0	ENST00000297316.4:c.533G>T	p.Gly178Val	p.G178V	ENST00000297316	NM_022454.3	178	gGc/gTc																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551410	150551410	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs769198905		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2340	250	970	0	ENST00000369026.2:c.597G>T	p.Met199Ile	p.M199I	ENST00000369026	NM_021960.4	199	atG/atT																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175942	176175942	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	40	162	0	ENST00000367669.3:c.173C>A	p.Ser58Ter	p.S58*	ENST00000367669	NM_022457.5	58	tCg/tAg																																																																														
TET1	80312	MSKCC	GRCh37	10	70450735	70450735	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs774165175		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	131	558	0	ENST00000373644.4:c.5575C>G	p.Pro1859Ala	p.P1859A	ENST00000373644	NM_030625.2	1859	Cca/Gca																																																																														
WT1	7490	MSKCC	GRCh37	11	32456371	32456371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	205	831	0	ENST00000332351.3:c.521C>G	p.Ala174Gly	p.A174G	ENST00000332351	NM_024426.4	174	gCc/gGc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138148	64138148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	197	820	0	ENST00000334205.4:c.2071C>T	p.Leu691Phe	p.L691F	ENST00000334205	NM_003942.2	691	Ctc/Ttc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445092	49445092	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs201778313		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	163	747	0	ENST00000301067.7:c.2374G>C	p.Ala792Pro	p.A792P	ENST00000301067	NM_003482.3	792	Gct/Cct																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514403	103514403	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	42	234	0	ENST00000355739.4:c.904G>T	p.Glu302Ter	p.E302*	ENST00000355739	NM_000123.3	302	Gaa/Taa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678427	88678427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	214	918	0	ENST00000360948.2:c.1109A>T	p.His370Leu	p.H370L	ENST00000360948	NM_001012338.2	370	cAc/cTc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478227	99478227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	91	431	0	ENST00000268035.6:c.3131G>C	p.Arg1044Thr	p.R1044T	ENST00000268035	NM_000875.3	1044	aGg/aCg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778858	3778858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	345	775	1	ENST00000262367.5:c.6190C>T	p.Pro2064Ser	p.P2064S	ENST00000262367	NM_004380.2	2064	Ccc/Tcc																																																																														
CBFB	865	MSKCC	GRCh37	16	67116212	67116212	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	154	625	0	ENST00000412916.2:c.495+1G>T		p.X165_splice	ENST00000412916		165																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993287	72993287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	255	949	0	ENST00000268489.5:c.758G>A	p.Ser253Asn	p.S253N	ENST00000268489	NM_006885.3	253	aGc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	385	833	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41258490	41258490	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	380	494	0	ENST00000357654.3:c.195G>C	p.Lys65Asn	p.K65N	ENST00000357654	NM_007294.3	65	aaG/aaC																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78704506	78704506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	202	433	0	ENST00000306801.3:c.654G>T	p.Glu218Asp	p.E218D	ENST00000306801	NM_020761.2	218	gaG/gaT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	434	779	2	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214173	36214173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	637	784	0	ENST00000222270.7:c.2999G>T	p.Cys1000Phe	p.C1000F	ENST00000222270	NM_014727.1	1000	tGt/tTt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214678	36214678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	314	709	0	ENST00000222270.7:c.3104C>T	p.Ser1035Phe	p.S1035F	ENST00000222270	NM_014727.1	1035	tCt/tTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212289026	212289026	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	106	422	0	ENST00000342788.4:c.2720G>A	p.Gly907Glu	p.G907E	ENST00000342788	NM_005235.2	907	gGa/gAa																																																																														
INHA	3623	MSKCC	GRCh37	2	220439904	220439904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	457	928	0	ENST00000243786.2:c.757C>A	p.Pro253Thr	p.P253T	ENST00000243786	NM_002191.3	253	Ccg/Acg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445035	89445035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	93	549	0	ENST00000336596.2:c.1355G>T	p.Ser452Ile	p.S452I	ENST00000336596	NM_005233.5	452	aGc/aTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89456522	89456522	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	86	305	0	ENST00000336596.2:c.1697+1G>T		p.X566_splice	ENST00000336596	NM_005233.5	566																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134968183	134968183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	755	483	1	ENST00000398015.3:c.2696C>T	p.Ser899Phe	p.S899F	ENST00000398015	NM_004441.4	899	tCc/tTc																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664981	138664981	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	88	349	0	ENST00000330315.3:c.584T>A	p.Leu195Gln	p.L195Q	ENST00000330315	NM_023067.3	195	cTg/cAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189582193	189582193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	125	462	0	ENST00000264731.3:c.752G>T	p.Arg251Leu	p.R251L	ENST00000264731	NM_003722.4	251	cGt/cTt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808870	1808870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs560280646		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	250	870	1	ENST00000260795.2:c.2302G>A	p.Glu768Lys	p.E768K	ENST00000260795		768	Gag/Aag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31485003	31485003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	89	331	0	ENST00000344624.3:c.1981G>T	p.Asp661Tyr	p.D661Y	ENST00000344624		661	Gac/Tac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680482	30680482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	159	611	0	ENST00000376406.3:c.1237G>T	p.Ala413Ser	p.A413S	ENST00000376406	NM_014641.2	413	Gcg/Tcg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202200	138202200	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3734553		P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	151	549	0	ENST00000237289.4:c.2117G>A	p.Arg706Gln	p.R706Q	ENST00000237289	NM_001270507.1	706	cGa/cAa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026850	6026850	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	468	532	0	ENST00000265849.7:c.1546A>C	p.Ser516Arg	p.S516R	ENST00000265849	NM_000535.5	516	Agc/Cgc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148512086	148512086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	126	522	0	ENST00000320356.2:c.1592C>T	p.Pro531Leu	p.P531L	ENST00000320356	NM_004456.4	531	cCa/cTa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80336316	80336316	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	219	342	1	ENST00000286548.4:c.1003G>T	p.Glu335Ter	p.E335*	ENST00000286548	NM_002072.3	335	Gag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66766111	66766111	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	382	387	0	ENST00000374690.3:c.1124del	p.Pro375ArgfsTer104	p.P375Rfs*104	ENST00000374690	NM_000044.3	375	Ccg/cg																																																																														
AR	367	MSKCC	GRCh37	X	66766228	66766228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	172	332	0	ENST00000374690.3:c.1240C>A	p.Leu414Met	p.L414M	ENST00000374690	NM_000044.3	414	Ctg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	143	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0043176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	51	560	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
PGR	5241	MSKCC	GRCh37	11	100998684	100998684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	97	870	0	ENST00000325455.5:c.1118C>T	p.Ala373Val	p.A373V	ENST00000325455	NM_001202474.3	373	gCg/gTg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143094798	143094798	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	31	309	0	ENST00000262992.4:c.1346T>C	p.Met449Thr	p.M449T	ENST00000262992	NM_001101669.1	449	aTg/aCg																																																																														
ATM	472	MSKCC	GRCh37	11	108175445	108175445	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	140	276	0	ENST00000278616.4:c.5540A>G	p.His1847Arg	p.H1847R	ENST00000278616	NM_000051.3	1847	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	143	347	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120811	115120811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	148	600	0	ENST00000257566.3:c.195G>C	p.Met65Ile	p.M65I	ENST00000257566	NM_016569.3	65	atG/atC																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436071	110436071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	155	806	0	ENST00000375856.3:c.2330C>G	p.Thr777Arg	p.T777R	ENST00000375856	NM_003749.2	777	aCg/aGg																																																																														
MGA	23269	MSKCC	GRCh37	15	41961656	41961657	+	stop_gained	Nonsense_Mutation	DNP	AG	AG	TT			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	112	435	0	ENST00000219905.7:c.564_565delinsTT	p.Gln188_Glu189delinsHisTer	p.Q188_E189delinsH*	ENST00000219905	NM_001164273.1	188	caAGaa/caTTaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645244	67645244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	77	635	0	ENST00000264010.4:c.509G>T	p.Gly170Val	p.G170V	ENST00000264010	NM_006565.3	170	gGg/gTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991853	72991853	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	87	627	0	ENST00000268489.5:c.2192G>C	p.Cys731Ser	p.C731S	ENST00000268489	NM_006885.3	731	tGt/tCt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371799	45371799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	172	341	0	ENST00000262160.6:c.1192G>T	p.Val398Phe	p.V398F	ENST00000262160	NM_005901.5	398	Gtt/Ttt																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19258541	19258541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	241	855	0	ENST00000162023.5:c.359G>T	p.Gly120Val	p.G120V	ENST00000162023		120	gGg/gTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306604	41306604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	187	656	0	ENST00000373198.4:c.1055C>T	p.Pro352Leu	p.P352L	ENST00000373198	NM_133170.3	352	cCc/cTc																																																																														
NF2	4771	MSKCC	GRCh37	22	30032755	30032755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	53	343	0	ENST00000338641.4:c.131del	p.Lys44ArgfsTer79	p.K44Rfs*79	ENST00000338641	NM_000268.3	44	Aag/ag																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180367	38180367	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	339	827	0	ENST00000396334.3:c.215T>A	p.Leu72Ter	p.L72*	ENST00000396334	NM_002468.4	72	tTg/tAg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436398	52436399	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	138	679	3	ENST00000460680.1:c.2095_2096delinsTT	p.Arg699Leu	p.R699L	ENST00000460680	NM_004656.3	699	CGg/TTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851688	134851688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	178	502	0	ENST00000398015.3:c.1094C>A	p.Ala365Glu	p.A365E	ENST00000398015	NM_004441.4	365	gCa/gAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217129	66217129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	120	405	0	ENST00000273854.3:c.2486C>A	p.Pro829His	p.P829H	ENST00000273854	NM_004439.5	829	cCc/cAc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143114239	143114239	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	28	237	0	ENST00000262992.4:c.1181+1G>T		p.X394_splice	ENST00000262992	NM_001101669.1	394																																																																															
SDHA	6389	MSKCC	GRCh37	5	226022	226022	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	45	109	0	ENST00000264932.6:c.481A>T	p.Ser161Cys	p.S161C	ENST00000264932	NM_004168.2	161	Agc/Tgc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522688	176522688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	84	876	0	ENST00000292408.4:c.1785G>T	p.Gln595His	p.Q595H	ENST00000292408	NM_213647.1	595	caG/caT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066653	94066653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	132	454	0	ENST00000369303.4:c.1106G>T	p.Cys369Phe	p.C369F	ENST00000369303	NM_004440.3	369	tGt/tTt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157510782	157510782	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321954955		P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	69	488	0	ENST00000346085.5:c.3557C>T	p.Ser1186Leu	p.S1186L	ENST00000346085	NM_020732.3	1186	tCg/tTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979385	2979385	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	316	435	0	ENST00000396946.4:c.862C>T	p.Gln288Ter	p.Q288*	ENST00000396946	NM_032415.4	288	Cag/Tag																																																																														
HGF	3082	MSKCC	GRCh37	7	81386550	81386550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	98	435	1	ENST00000222390.5:c.437G>T	p.Gly146Val	p.G146V	ENST00000222390	NM_000601.4	146	gGc/gTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485951	8485952	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	95	410	0	ENST00000356435.5:c.2865_2866delinsAT	p.Leu956Phe	p.L956F	ENST00000356435		955	acCCtt/acATtt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937185	76937185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	125	241	0	ENST00000373344.5:c.3563C>T	p.Ser1188Phe	p.S1188F	ENST00000373344	NM_000489.3	1188	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	117	720	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	27	320	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	17	338	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495360	149495360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114435947		P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	164	805	0	ENST00000261799.4:c.3287C>T	p.Ala1096Val	p.A1096V	ENST00000261799	NM_002609.3	1096	gCg/gTg																																																																														
FYN	2534	MSKCC	GRCh37	6	112024169	112024169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465963577		P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	18	478	0	ENST00000368678.4:c.616C>T	p.Arg206Cys	p.R206C	ENST00000368678		206	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3799642	3799652	+	frameshift_variant	Frame_Shift_Del	DEL	GGTATCATTTT	GGTATCATTTT	-			P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	14	357	0	ENST00000262367.5:c.3812_3822del	p.Lys1271IlefsTer8	p.K1271Ifs*8	ENST00000262367	NM_004380.2	1271	aAAAATGATACC/a																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575168	48575168	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	23	302	0	ENST00000342988.3:c.362T>A	p.Leu121Ter	p.L121*	ENST00000342988	NM_005359.5	121	tTa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112175771	112175775	+	frameshift_variant	Frame_Shift_Ins	INS	GAAAG	GAAAG	AAAAGT			P-0043234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	26	331	0	ENST00000257430.4:c.4480_4484delinsAAAAGT	p.Glu1494LysfsTer20	p.E1494Kfs*20	ENST00000257430	NM_000038.5	1494	GAAAGt/AAAAGTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	121	546	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0043236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	219	538	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782177		P-0043236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	424	780	0	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562171	21562171	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753951508		P-0043236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	592	1044	0	ENST00000382592.4:c.1748A>G	p.Asn583Ser	p.N583S	ENST00000382592	NM_014572.2	583	aAc/aGc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99454661	99454661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	275	601	0	ENST00000268035.6:c.1580A>G	p.Tyr527Cys	p.Y527C	ENST00000268035	NM_000875.3	527	tAc/tGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0043243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	129	440	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0043243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	38	303	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0043243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	183	683	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952076	178952076	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	44	366	0	ENST00000263967.3:c.3131A>T	p.Asn1044Ile	p.N1044I	ENST00000263967	NM_006218.2	1044	aAt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	24	768	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	357	426	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221989	1221989	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1085307466		P-0043344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	293	716	0	ENST00000326873.7:c.904C>T	p.Gln302Ter	p.Q302*	ENST00000326873	NM_000455.4	302	Cag/Tag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2185872	2185872	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	380	743	1	ENST00000398665.3:c.146del	p.Pro49ArgfsTer12	p.P49Rfs*12	ENST00000398665	NM_032482.2	48	atC/at																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602438	10602438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	318	723	0	ENST00000171111.5:c.1140G>T	p.Arg380Ser	p.R380S	ENST00000171111	NM_203500.1	380	agG/agT																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874280	155874280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869025196		P-0043356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	137	549	2	ENST00000368323.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000368323	NM_006912.5	84	gCc/gTc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846363	156846363	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs763758904		P-0043356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	125	639	0	ENST00000524377.1:c.1804C>T	p.Arg602Ter	p.R602*	ENST00000524377	NM_002529.3	602	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1230	281	591	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
BCL6	604	MSKCC	GRCh37	3	187447294	187447294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1630	103	658	1	ENST00000232014.4:c.899G>A	p.Ser300Asn	p.S300N	ENST00000232014	NM_001130845.1	300	aGc/aAc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673149	30673149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	105	541	0	ENST00000376406.3:c.3811G>A	p.Gly1271Arg	p.G1271R	ENST00000376406	NM_014641.2	1271	Gga/Aga																																																																														
IRF4	3662	MSKCC	GRCh37	6	401424	401424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0043363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	38	224	0	ENST00000380956.4:c.746A>G	p.Asp249Gly	p.D249G	ENST00000380956	NM_001195286.1	249	gAc/gGc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114208	115114208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	61	658	0	ENST00000257566.3:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000257566	NM_016569.3	337	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579329	7579329	+	stop_gained	Nonsense_Mutation	SNP	T	T	A	rs121912658		P-0043373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	189	621	0	ENST00000269305.4:c.358A>T	p.Lys120Ter	p.K120*	ENST00000269305	NM_001126112.2	120	Aag/Tag																																																																														
RET	5979	MSKCC	GRCh37	10	43604580	43604580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs895556824		P-0043373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	94	759	0	ENST00000355710.3:c.1165C>T	p.Leu389Phe	p.L389F	ENST00000355710	NM_020975.4	389	Ctc/Ttc																																																																														
POLE	5426	MSKCC	GRCh37	12	133218233	133218233	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	144	631	0	ENST00000320574.5:c.5378G>T	p.Arg1793Met	p.R1793M	ENST00000320574	NM_006231.2	1793	aGg/aTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437102	110437102	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1009278565		P-0043373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	21	135	0	ENST00000375856.3:c.1299G>T	p.Met433Ile	p.M433I	ENST00000375856	NM_003749.2	433	atG/atT																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061538	38061538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	954	337	0	ENST00000250448.2:c.451A>G	p.Ser151Gly	p.S151G	ENST00000250448	NM_004496.3	151	Agc/Ggc																																																																														
MGA	23269	MSKCC	GRCh37	15	42003380	42003380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	51	432	0	ENST00000219905.7:c.2917G>T	p.Ala973Ser	p.A973S	ENST00000219905	NM_001164273.1	973	Gca/Tca																																																																														
NF1	4763	MSKCC	GRCh37	17	29553558	29553558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	35	260	0	ENST00000358273.4:c.2107G>T	p.Val703Phe	p.V703F	ENST00000358273	NM_001042492.2	703	Gtt/Ttt																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735386	204735386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	42	331	0	ENST00000302823.3:c.187C>A	p.Pro63Thr	p.P63T	ENST00000302823	NM_005214.4	63	Cca/Aca																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62325763	62325763	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0043373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	79	647	2	ENST00000482936.1:c.3031G>T	p.Ala1011Ser	p.A1011S	ENST00000482936		1011	Gct/Tct																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520260	176520260	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	100	748	0	ENST00000292408.4:c.1179G>T	p.Gln393His	p.Q393H	ENST00000292408	NM_213647.1	393	caG/caT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675813	30675813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	161	756	0	ENST00000376406.3:c.2543G>T	p.Gly848Val	p.G848V	ENST00000376406	NM_014641.2	848	gGa/gTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410391	63410391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	72	406	0	ENST00000330258.3:c.2776G>C	p.Glu926Gln	p.E926Q	ENST00000330258	NM_152424.3	926	Gaa/Caa																																																																														
NF2	4771	MSKCC	GRCh37	22	30050645	30050645	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0043401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	89	309	0	ENST00000338641.4:c.448-1G>A		p.X150_splice	ENST00000338641	NM_000268.3	150																																																																															
LATS2	26524	MSKCC	GRCh37	13	21557497	21557497	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	123	549	0	ENST00000382592.4:c.2348A>T	p.His783Leu	p.H783L	ENST00000382592	NM_014572.2	783	cAc/cTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593667	55593669	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0043409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	245	78	0	ENST00000288135.5:c.1735_1737del	p.Asp579del	p.D579del	ENST00000288135	NM_000222.2	578	tATGat/tat																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	283	566	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1424958105		P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	195	373	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	185	375	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81990351	81990351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	235	499	0	ENST00000359376.3:c.3622G>A	p.Glu1208Lys	p.E1208K	ENST00000359376	NM_002661.3	1208	Gaa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268137	153268137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752114536		P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	218	339	1	ENST00000281708.4:c.671G>A	p.Arg224Gln	p.R224Q	ENST00000281708	NM_033632.3	224	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485926	8485926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770180884		P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	168	403	0	ENST00000356435.5:c.2891C>T	p.Pro964Leu	p.P964L	ENST00000356435		964	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858202	9858202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	212	461	1	ENST00000330684.3:c.3199C>T	p.Arg1067Trp	p.R1067W	ENST00000330684	NM_001134407.1	1067	Cgg/Tgg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477164	67477164	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1480492577		P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	272	544	0	ENST00000327367.4:c.971A>G	p.Tyr324Cys	p.Y324C	ENST00000327367	NM_005902.3	324	tAt/tGt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650845	37650845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	353	676	0	ENST00000447079.4:c.2317C>T	p.Arg773Cys	p.R773C	ENST00000447079	NM_015083.1	773	Cgt/Tgt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662307	67662307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	232	422	0	ENST00000264010.4:c.1553C>T	p.Thr518Ile	p.T518I	ENST00000264010	NM_006565.3	518	aCc/aTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969189	93969189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868510824		P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	143	293	1	ENST00000369303.4:c.1807C>T	p.Pro603Ser	p.P603S	ENST00000369303	NM_004440.3	603	Cca/Tca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717757	89717758	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	61	338	1	ENST00000371953.3:c.783_784del	p.Asn262GlnfsTer35	p.N262Qfs*35	ENST00000371953	NM_000314.4	261	cAG/c																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798510	32798510	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746574637		P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	358	729	1	ENST00000374899.4:c.1346G>A	p.Arg449Gln	p.R449Q	ENST00000374899	NM_018833.2	449	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	198	353	0				ENST00000310581	NM_198253.2																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36223707	36223707	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1468457510		P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	430	926	1	ENST00000222270.7:c.6257C>T	p.Ser2086Leu	p.S2086L	ENST00000222270	NM_014727.1	2086	tCg/tTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	394695	394695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	305	593	0	ENST00000399788.2:c.5000C>T	p.Pro1667Leu	p.P1667L	ENST00000399788	NM_001042603.1	1667	cCa/cTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427372	49427372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	387	666	0	ENST00000301067.7:c.11116C>T	p.Leu3706Phe	p.L3706F	ENST00000301067	NM_003482.3	3706	Ctt/Ttt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112884133	112884133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	359	546	0	ENST00000351677.2:c.68G>A	p.Arg23Lys	p.R23K	ENST00000351677	NM_002834.3	23	aGa/aAa																																																																														
MSI2	124540	MSKCC	GRCh37	17	55693385	55693385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749045445		P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	375	737	0	ENST00000284073.2:c.592G>A	p.Gly198Ser	p.G198S	ENST00000284073	NM_138962.2	198	Ggc/Agc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56338945	56338945	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1027827994		P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	23	13	0	ENST00000348428.3:c.70C>T	p.Pro24Ser	p.P24S	ENST00000348428	NM_006785.3	24	Cct/Tct																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295130	15295130	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	414	777	0	ENST00000263388.2:c.2542C>T	p.Gln848Ter	p.Q848*	ENST00000263388	NM_000435.2	848	Cag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216389	36216389	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	455	818	0	ENST00000222270.7:c.3652T>C	p.Cys1218Arg	p.C1218R	ENST00000222270	NM_014727.1	1218	Tgt/Cgt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268730	46268731	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	261	568	0	ENST00000371998.3:c.3015_3016delinsTT	p.Gln1006Ter	p.Q1006*	ENST00000371998		1005	aaCCaa/aaTTaa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090479	71090479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	158	309	0	ENST00000318789.4:c.869G>A	p.Ser290Asn	p.S290N	ENST00000318789	NM_032682.5	290	aGt/aAt																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149243902	149243902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	279	450	0	ENST00000360632.3:c.916C>T	p.His306Tyr	p.H306Y	ENST00000360632	NM_015472.4	306	Cat/Tat																																																																														
TP63	8626	MSKCC	GRCh37	3	189612089	189612089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	284	660	1	ENST00000264731.3:c.1841C>T	p.Ser614Phe	p.S614F	ENST00000264731	NM_003722.4	614	tCt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1293689	1293689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	376	785	1	ENST00000310581.5:c.1312C>T	p.Pro438Ser	p.P438S	ENST00000310581	NM_198253.2	438	Ccc/Tcc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751945	57751945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	263	476	0	ENST00000274289.3:c.1292G>A	p.Gly431Glu	p.G431E	ENST00000274289	NM_006622.3	431	gGa/gAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962352	2962352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	337	708	1	ENST00000396946.4:c.2185G>A	p.Asp729Asn	p.D729N	ENST00000396946	NM_032415.4	729	Gac/Aac																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468169	50468170	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	249	526	1	ENST00000331340.3:c.1404_1405delinsAA	p.Val469Met	p.V469M	ENST00000331340	NM_006060.4	468	cgGGtg/cgAAtg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080566	5080566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	133	302	0	ENST00000381652.3:c.2317C>T	p.Pro773Ser	p.P773S	ENST00000381652	NM_004972.3	773	Cct/Tct																																																																														
ATRX	546	MSKCC	GRCh37	X	76845323	76845323	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	20	161	0	ENST00000373344.5:c.6198T>G	p.Asp2066Glu	p.D2066E	ENST00000373344	NM_000489.3	2066	gaT/gaG																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231326	46231329	+	frameshift_variant	Frame_Shift_Del	DEL	TTTT	TTTT	ATC			P-0043411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	141	321	0	ENST00000334344.6:c.1166_1169delinsATC	p.Val389AspfsTer27	p.V389Dfs*27	ENST00000334344	NM_152641.2	389	gTTTTa/gATCa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043498-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	31	642	0	ENST00000250448.2:c.740A>C	p.His247Pro	p.H247P	ENST00000250448	NM_004496.3	247	cAc/cCc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0043508-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	85	251	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747084	40747084	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762809890		P-0043508-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	221	391	1	ENST00000373198.4:c.2998G>A	p.Ala1000Thr	p.A1000T	ENST00000373198	NM_133170.3	1000	Gcc/Acc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587776656		P-0043508-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	187	461	0	ENST00000326873.7:c.843del	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610490	10610490	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043508-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	204	419	0	ENST00000171111.5:c.220C>T	p.Gln74Ter	p.Q74*	ENST00000171111	NM_203500.1	74	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692819	89692819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043508-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			140	19	169	0	ENST00000371953.3:c.303C>G	p.Ile101Met	p.I101M	ENST00000371953	NM_000314.4	101	atC/atG																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091749	29091749	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1435731482		P-0043508-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	17	215	0	ENST00000328354.6:c.1208G>T	p.Gly403Val	p.G403V	ENST00000328354	NM_007194.3	403	gGg/gTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925348	114925348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043508-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			598	93	421	0	ENST00000543371.1:c.1426G>T	p.Glu476Ter	p.E476*	ENST00000543371	NM_001198531.1	476	Gaa/Taa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008249	29008249	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043508-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	39	246	0	ENST00000282397.4:c.622G>T	p.Glu208Ter	p.E208*	ENST00000282397	NM_002019.4	208	Gaa/Taa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158636892	158636893	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0043508-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	139	340	0	ENST00000263640.3:c.287_288delinsTT	p.Gly96Val	p.G96V	ENST00000263640	NM_001105.4	96	gGG/gTT																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134885791	134885791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043508-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	240	388	0	ENST00000398015.3:c.1702G>T	p.Ala568Ser	p.A568S	ENST00000398015	NM_004441.4	568	Gct/Tct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0043590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	297	505	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519985		P-0043590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	203	883	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86667995	86667995	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	27	324	0	ENST00000274376.6:c.1759A>C	p.Asn587His	p.N587H	ENST00000274376	NM_002890.2	587	Aat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0043656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	258	773	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242480	55242503	+	inframe_deletion	In_Frame_Del	DEL	AACATCTCCGAAAGCCAACAAGGA	AACATCTCCGAAAGCCAACAAGGA	-			P-0043656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	820	375	0	ENST00000275493.2:c.2252_2275del	p.Thr751_Glu758del	p.T751_E758del	ENST00000275493	NM_005228.3	750	gcAACATCTCCGAAAGCCAACAAGGAa/gca																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040940	47040941	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0043656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	233	923	0	ENST00000329236.7:c.1239_1240del	p.Ser414AspfsTer25	p.S414Dfs*25	ENST00000329236	NM_001204466.1	412	tcTGtg/tctg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421849	49421849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	125	783	1	ENST00000301067.7:c.14458C>T	p.Pro4820Ser	p.P4820S	ENST00000301067	NM_003482.3	4820	Cca/Tca																																																																														
RB1	5925	MSKCC	GRCh37	13	48951082	48951082	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	134	197	0	ENST00000267163.4:c.1244T>G	p.Ile415Arg	p.I415R	ENST00000267163	NM_000321.2	415	aTa/aGa																																																																														
MGA	23269	MSKCC	GRCh37	15	42058658	42058658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	68	218	0	ENST00000219905.7:c.8378G>A	p.Arg2793Lys	p.R2793K	ENST00000219905	NM_001164273.1	2793	aGg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	159	403	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397516896		P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	232	285	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633380	8633380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768353460		P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	145	414	1	ENST00000356435.5:c.289G>A	p.Glu97Lys	p.E97K	ENST00000356435		97	Gaa/Aaa																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735422	204735422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	135	416	1	ENST00000302823.3:c.223C>T	p.Arg75Trp	p.R75W	ENST00000302823	NM_005214.4	75	Cgg/Tgg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120377	94120377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	104	280	0	ENST00000369303.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000369303	NM_004440.3	225	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	30143027	30143027	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	284	915	0	ENST00000389048.3:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000389048	NM_004304.4	167	Cag/Tag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123298174	123298174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	118	435	0	ENST00000358487.5:c.680G>A	p.Gly227Glu	p.G227E	ENST00000358487	NM_000141.4	227	gGa/gAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152420081	152420081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	131	458	0	ENST00000206249.3:c.1768G>A	p.Gly590Ser	p.G590S	ENST00000206249	NM_000125.3	590	Ggt/Agt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40485990	40485990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	183	707	0	ENST00000264657.5:c.875C>T	p.Ser292Phe	p.S292F	ENST00000264657	NM_139276.2	292	tCc/tTc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111855986	111855986	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	222	633	1	ENST00000341259.2:c.37T>A	p.Ser13Thr	p.S13T	ENST00000341259	NM_005475.2	13	Tcc/Acc																																																																														
NF1	4763	MSKCC	GRCh37	17	29422358	29422358	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658658		P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	261	757	0	ENST00000358273.4:c.31C>T	p.Gln11Ter	p.Q11*	ENST00000358273	NM_001042492.2	11	Cag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245497	41245497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	232	842	1	ENST00000357654.3:c.2051C>T	p.Pro684Leu	p.P684L	ENST00000357654	NM_007294.3	684	cCa/cTa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492697	56492697	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	158	435	0	ENST00000407977.2:c.242A>G	p.Lys81Arg	p.K81R	ENST00000407977		81	aAa/aGa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905600	50905600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	287	973	0	ENST00000440232.2:c.728C>T	p.Pro243Leu	p.P243L	ENST00000440232	NM_002691.3	243	cCc/cTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906424	50906424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	260	983	0	ENST00000440232.2:c.1085C>T	p.Pro362Leu	p.P362L	ENST00000440232	NM_002691.3	362	cCc/cTc																																																																														
CASP8	841	MSKCC	GRCh37	2	202149724	202149724	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	184	542	0	ENST00000358485.4:c.1165G>T	p.Glu389Ter	p.E389*	ENST00000358485	NM_001080125.1	389	Gag/Tag																																																																														
PAK7	0	MSKCC	GRCh37	20	9546760	9546760	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	112	346	0	ENST00000353224.5:c.1262A>C	p.Asp421Ala	p.D421A	ENST00000353224	NM_177990.2	421	gAc/gCc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755501	39755501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	148	512	0	ENST00000288319.7:c.1264C>T	p.His422Tyr	p.H422Y	ENST00000288319	NM_182918.3	422	Cac/Tac																																																																														
NF2	4771	MSKCC	GRCh37	22	30050697	30050697	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	123	313	1	ENST00000338641.4:c.499G>T	p.Glu167Ter	p.E167*	ENST00000338641	NM_000268.3	167	Gaa/Taa																																																																														
NF2	4771	MSKCC	GRCh37	22	30077474	30077491	+	inframe_deletion	In_Frame_Del	DEL	GAACTCAAGACAGAAATC	GAACTCAAGACAGAAATC	-			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	89	326	0	ENST00000338641.4:c.1623_1640del	p.Leu542_Glu547del	p.L542_E547del	ENST00000338641	NM_000268.3	541	GAACTCAAGACAGAAATC/-																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920511	134920511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	209	534	0	ENST00000398015.3:c.2326C>T	p.Pro776Ser	p.P776S	ENST00000398015	NM_004441.4	776	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1293688	1293688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	299	999	0	ENST00000310581.5:c.1313C>T	p.Pro438Leu	p.P438L	ENST00000310581	NM_198253.2	438	cCc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	86	227	0	ENST00000257430.4:c.3955C>T	p.Pro1319Ser	p.P1319S	ENST00000257430	NM_000038.5	1319	Cct/Tct																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962271	2962271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867239716		P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	250	716	0	ENST00000396946.4:c.2266G>A	p.Glu756Lys	p.E756K	ENST00000396946	NM_032415.4	756	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68993035	68993035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	63	297	0	ENST00000288368.4:c.1840C>T	p.Pro614Ser	p.P614S	ENST00000288368	NM_024870.2	614	Cca/Tca																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033173	69033173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	167	386	0	ENST00000288368.4:c.3613G>A	p.Glu1205Lys	p.E1205K	ENST00000288368	NM_024870.2	1205	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517895	8517895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	107	306	0	ENST00000356435.5:c.1496G>A	p.Gly499Glu	p.G499E	ENST00000356435		499	gGa/gAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27169568	27169568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778829843		P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	103	675	0	ENST00000380036.4:c.569C>T	p.Ser190Leu	p.S190L	ENST00000380036	NM_000459.3	190	tCg/tTg																																																																														
TEK	7010	MSKCC	GRCh37	9	27212785	27212785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	123	803	0	ENST00000380036.4:c.2767G>A	p.Asp923Asn	p.D923N	ENST00000380036	NM_000459.3	923	Gac/Aac																																																																														
PAX5	5079	MSKCC	GRCh37	9	36846881	36846881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs865878221		P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	180	561	0	ENST00000358127.4:c.1058C>T	p.Ser353Leu	p.S353L	ENST00000358127	NM_001280556.1	353	tCg/tTg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223505	53223505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	163	318	0	ENST00000375401.3:c.3854C>T	p.Ala1285Val	p.A1285V	ENST00000375401	NM_004187.3	1285	gCc/gTc																																																																														
AR	367	MSKCC	GRCh37	X	66765374	66765374	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760296797		P-0043669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	233	428	0	ENST00000374690.3:c.386G>A	p.Arg129Lys	p.R129K	ENST00000374690	NM_000044.3	129	aGa/aAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545585	106545585	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376453517		P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	51	296	0	ENST00000359195.3:c.3062G>A	p.Arg1021His	p.R1021H	ENST00000359195	NM_002649.2	1021	cGt/cAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	124	450	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
PAK1	5058	MSKCC	GRCh37	11	77103515	77103515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	42	266	0	ENST00000356341.3:c.51G>A	p.Met17Ile	p.M17I	ENST00000356341	NM_002576.4	17	atG/atA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	181	383	0				ENST00000310581	NM_198253.2																																																																																
MGA	23269	MSKCC	GRCh37	15	41989078	41989078	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	75	437	0	ENST00000219905.7:c.1870A>C	p.Lys624Gln	p.K624Q	ENST00000219905	NM_001164273.1	624	Aag/Cag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923728	72923728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	104	594	0	ENST00000268489.5:c.3350G>A	p.Ser1117Asn	p.S1117N	ENST00000268489	NM_006885.3	1117	aGc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7572973	7572973	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	69	410	0	ENST00000269305.4:c.1136del	p.Arg379ProfsTer43	p.R379Pfs*43	ENST00000269305	NM_001126112.2	379	cGc/cc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374920	45374920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	59	391	0	ENST00000262160.6:c.923C>T	p.Ser308Leu	p.S308L	ENST00000262160	NM_005901.5	308	tCa/tTa																																																																														
CDK6	1021	MSKCC	GRCh37	7	92355047	92355047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	31	246	0	ENST00000265734.4:c.430C>T	p.Arg144Cys	p.R144C	ENST00000265734	NM_001259.6	144	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	135	779	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352822		P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	49	450	0	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247530	71247530	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	41	279	0	ENST00000318789.4:c.3G>A	p.Met1?	p.M1?	ENST00000318789	NM_032682.5	1	atG/atA																																																																														
FANCC	2176	MSKCC	GRCh37	9	97876938	97876938	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	48	418	0	ENST00000289081.3:c.1127G>C	p.Arg376Thr	p.R376T	ENST00000289081	NM_000136.2	376	aGa/aCa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105869	27105878	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCAGATAA	GCTCAGATAA	-			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	68	468	0	ENST00000324856.7:c.5483_5492del	p.Ser1828LeufsTer52	p.S1828Lfs*52	ENST00000324856	NM_006015.4	1827	tGCTCAGATAAg/tg																																																																														
RIT1	6016	MSKCC	GRCh37	1	155880262	155880262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1165493340		P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	35	346	0	ENST00000368323.3:c.142G>A	p.Glu48Lys	p.E48K	ENST00000368323	NM_006912.5	48	Gaa/Aaa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195400	102195400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	36	272	1	ENST00000263464.3:c.160G>T	p.Gly54Cys	p.G54C	ENST00000263464	NM_001165.4	54	Ggt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133212542	133212542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	160	451	0	ENST00000320574.5:c.5747G>T	p.Trp1916Leu	p.W1916L	ENST00000320574	NM_006231.2	1916	tGg/tTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95583034	95583034	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	16	162	0	ENST00000343455.3:c.1510-2A>T		p.X504_splice	ENST00000343455	NM_177438.2	504																																																																															
CYLD	1540	MSKCC	GRCh37	16	50811766	50811766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	21	279	0	ENST00000398568.2:c.1043G>C	p.Arg348Thr	p.R348T	ENST00000398568	NM_001042412.1	348	aGa/aCa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10251533	10251533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	136	629	0	ENST00000340748.4:c.3399G>T	p.Glu1133Asp	p.E1133D	ENST00000340748		1133	gaG/gaT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105546	11105546	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	116	553	0	ENST00000344626.4:c.1462G>T	p.Glu488Ter	p.E488*	ENST00000344626	NM_003072.3	488	Gaa/Taa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31379511	31379512	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	43	367	1	ENST00000328111.2:c.918_919delinsAA	p.Glu307Lys	p.E307K	ENST00000328111	NM_006892.3	306	ctGGag/ctAAag																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72881617	72881617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	53	329	0	ENST00000325599.8:c.502G>T	p.Val168Phe	p.V168F	ENST00000325599	NM_018130.2	168	Gtt/Ttt																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502442	186502442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	23	250	0	ENST00000323963.5:c.165G>T	p.Lys55Asn	p.K55N	ENST00000323963		55	aaG/aaT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A	rs587778189		P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	40	445	0	ENST00000304494.5:c.149A>T	p.Gln50Leu	p.Q50L	ENST00000304494	NM_000077.4	50	cAg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A	rs587778189		P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	40	445	0	ENST00000304494.5:c.149A>T	p.Gln50Leu	p.Q50L	ENST00000304494	NM_000077.4	50	cAg/cTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931732	39931732	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	198	581	0	ENST00000378444.4:c.2867A>T	p.Lys956Ile	p.K956I	ENST00000378444	NM_001123385.1	956	aAa/aTa																																																																														
MED12	9968	MSKCC	GRCh37	X	70357787	70357788	+	missense_variant	Missense_Mutation	DNP	CT	CT	TC			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	197	657	0	ENST00000374080.3:c.6038_6039delinsTC	p.Thr2013Ile	p.T2013I	ENST00000374080		2013	aCT/aTC																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288887	212288887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	19	193	0	ENST00000342788.4:c.2859G>T	p.Met953Ile	p.M953I	ENST00000342788	NM_005235.2	953	atG/atT																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	349	799	1	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0043711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	478	883	1	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
RB1	5925	MSKCC	GRCh37	13	49039133	49039133	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs587776786		P-0043711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	89	155	0	ENST00000267163.4:c.2212-1G>A		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692819	89692819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	143	232	0	ENST00000371953.3:c.303C>G	p.Ile101Met	p.I101M	ENST00000371953	NM_000314.4	101	atC/atG																																																																														
TET1	80312	MSKCC	GRCh37	10	70333632	70333632	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	220	454	0	ENST00000373644.4:c.1537C>T	p.Gln513Ter	p.Q513*	ENST00000373644	NM_030625.2	513	Cag/Tag																																																																														
MAX	4149	MSKCC	GRCh37	14	65560455	65560455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	225	358	0	ENST00000358664.4:c.142G>A	p.Asp48Asn	p.D48N	ENST00000358664	NM_002382.4	48	Gac/Aac																																																																														
MSI2	124540	MSKCC	GRCh37	17	55334132	55334132	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	257	468	0	ENST00000284073.2:c.29C>A	p.Ser10Ter	p.S10*	ENST00000284073	NM_138962.2	10	tCg/tAg																																																																														
CALR	811	MSKCC	GRCh37	19	13050300	13050300	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	254	503	0	ENST00000316448.5:c.252C>G	p.Phe84Leu	p.F84L	ENST00000316448	NM_004343.3	84	ttC/ttG																																																																														
EP300	2033	MSKCC	GRCh37	22	41547841	41547841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	345	366	0	ENST00000263253.7:c.2822C>A	p.Ser941Tyr	p.S941Y	ENST00000263253	NM_001429.3	941	tCc/tAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41553365	41553365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	344	442	0	ENST00000263253.7:c.3454G>A	p.Glu1152Lys	p.E1152K	ENST00000263253	NM_001429.3	1152	Gaa/Aaa																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250784	26250784	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	174	385	0	ENST00000446824.2:c.50C>G	p.Pro17Arg	p.P17R	ENST00000446824	NM_021018.2	17	cCg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879254249		P-0043798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	412	737	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																																																														
RB1	5925	MSKCC	GRCh37	13	48951099	48951100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0043798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	88	291	0	ENST00000267163.4:c.1265_1266dup	p.Gly423Ter	p.G423*	ENST00000267163	NM_000321.2	421	gat/gATat																																																																														
RB1	5925	MSKCC	GRCh37	13	48951076	48951286	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAGTATACTGAAAAGAGTGAAGGATATAGGATACATCTTTAAAGAGAAATTTGCTAAAGCTGTGGGACAGGGTTGTGTCGAAATTGGATCACAGGTAACTTGAATTCATTGTAATTCGTGGTACTATAGAGTAATAATATTAAAAGCAGCATCTTTCCAGTTCGTATAAATACTCTAACAGTATTTGTCTAGTAGTATAAAATACTGTCA	AAAGTATACTGAAAAGAGTGAAGGATATAGGATACATCTTTAAAGAGAAATTTGCTAAAGCTGTGGGACAGGGTTGTGTCGAAATTGGATCACAGGTAACTTGAATTCATTGTAATTCGTGGTACTATAGAGTAATAATATTAAAAGCAGCATCTTTCCAGTTCGTATAAATACTCTAACAGTATTTGTCTAGTAGTATAAAATACTGTCA	-			P-0043798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	11	236	0	ENST00000267163.4:c.1238_1332+116del		p.X413_splice	ENST00000267163	NM_000321.2	413																																																																															
AXL	558	MSKCC	GRCh37	19	41736935	41736935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776682499		P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	248	591	2	ENST00000301178.4:c.650G>A	p.Arg217His	p.R217H	ENST00000301178	NM_021913.4	217	cGc/cAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412156	63412156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	262	768	2	ENST00000330258.3:c.1011G>T	p.Met337Ile	p.M337I	ENST00000330258	NM_152424.3	337	atG/atT																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24159103	24159103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	167	424	0	ENST00000263121.7:c.775G>C	p.Asp259His	p.D259H	ENST00000263121	NM_003073.3	259	Gac/Cac																																																																														
MGA	23269	MSKCC	GRCh37	15	42041647	42041647	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	176	449	1	ENST00000219905.7:c.5842C>T	p.Gln1948Ter	p.Q1948*	ENST00000219905	NM_001164273.1	1948	Cag/Tag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472583	88472583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	68	474	0	ENST00000360948.2:c.1972C>A	p.His658Asn	p.H658N	ENST00000360948	NM_001012338.2	658	Cac/Aac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600528	10600528	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	195	419	0	ENST00000171111.5:c.1327T>A	p.Tyr443Asn	p.Y443N	ENST00000171111	NM_203500.1	443	Tat/Aat																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286776	33286776	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0043829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	182	480	0	ENST00000374542.5:c.2161A>C	p.Lys721Gln	p.K721Q	ENST00000374542	NM_001141970.1	721	Aag/Cag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288391	15288391	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201082692		P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	362	753	0	ENST00000263388.2:c.4348G>A	p.Ala1450Thr	p.A1450T	ENST00000263388	NM_000435.2	1450	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578505	7578505	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	953	1045	0	ENST00000269305.4:c.425del	p.Pro142LeufsTer28	p.P142Lfs*28	ENST00000269305	NM_001126112.2	142	cCt/ct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262097	16262097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1481024603		P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	148	357	0	ENST00000375759.3:c.9362G>A	p.Arg3121Gln	p.R3121Q	ENST00000375759	NM_015001.2	3121	cGg/cAg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267340	198267340	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1332470056		P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	430	497	0	ENST00000335508.6:c.2017A>G	p.Ile673Val	p.I673V	ENST00000335508	NM_012433.2	673	Att/Gtt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347612	89347612	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs75362060		P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	652	809	0	ENST00000301030.4:c.5338G>T	p.Ala1780Ser	p.A1780S	ENST00000301030	NM_001256183.1	1780	Gcc/Tcc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120467979	120467979	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	130	776	0	ENST00000256646.2:c.4460T>G	p.Val1487Gly	p.V1487G	ENST00000256646	NM_024408.3	1487	gTc/gGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444053	49444053	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	561	717	0	ENST00000301067.7:c.3318del	p.Ser1107AlafsTer12	p.S1107Afs*12	ENST00000301067	NM_003482.3	1106	ccC/cc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975453	26975453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	333	500	0	ENST00000381527.3:c.1079C>T	p.Thr360Met	p.T360M	ENST00000381527	NM_001260.1	360	aCg/aTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48941669	48941678	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAATAAAG	AAAAATAAAG	-			P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	149	258	1	ENST00000267163.4:c.980_989del	p.Lys327IlefsTer2	p.K327Ifs*2	ENST00000267163	NM_000321.2	327	AAAAATAAAGat/at																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992196	72992196	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs111320371		P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	732	927	0	ENST00000268489.5:c.1849G>T	p.Val617Phe	p.V617F	ENST00000268489	NM_006885.3	617	Gtt/Ttt																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805477	46805477	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1207	776	972	0	ENST00000290295.7:c.479A>C	p.His160Pro	p.H160P	ENST00000290295	NM_006361.5	160	cAt/cCt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554027	63554027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	528	629	0	ENST00000307078.5:c.712G>T	p.Asp238Tyr	p.D238Y	ENST00000307078	NM_004655.3	238	Gac/Tac																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121018	29121018	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs137853009		P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	251	708	1	ENST00000328354.6:c.539G>T	p.Arg180Leu	p.R180L	ENST00000328354	NM_007194.3	180	cGc/cTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266513	41266513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763882677		P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	420	445	0	ENST00000349496.5:c.310G>A	p.Asp104Asn	p.D104N	ENST00000349496	NM_001904.3	104	Gat/Aat																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851762	134851762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1479	535	680	0	ENST00000398015.3:c.1168C>A	p.Arg390Ser	p.R390S	ENST00000398015	NM_004441.4	390	Cgc/Agc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286281	66286282	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GA	GA	AG			P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	226	319	0	ENST00000273854.3:c.1404_1405delinsCT	p.Pro469Ser	p.P469S	ENST00000273854	NM_004439.5	468	gcTCca/gcCTca																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995553	68995553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	223	710	0	ENST00000288368.4:c.1957G>T	p.Asp653Tyr	p.D653Y	ENST00000288368	NM_024870.2	653	Gat/Tat																																																																														
AGO2	27161	MSKCC	GRCh37	8	141583015	141583015	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	682	793	0	ENST00000220592.5:c.232A>C	p.Met78Leu	p.M78L	ENST00000220592	NM_012154.3	78	Atg/Ctg																																																																														
HRAS	3265	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs104894228		P-0043852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	421	563	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913255		P-0043852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	430	601	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47087991	47087991	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	403	425	0	ENST00000409792.3:c.7084C>T	p.Gln2362Ter	p.Q2362*	ENST00000409792	NM_014159.6	2362	Cag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486253	8486253	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1256737547		P-0043852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	279	411	0	ENST00000356435.5:c.2564G>A	p.Gly855Asp	p.G855D	ENST00000356435		855	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0043852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	275	246	1				ENST00000310581	NM_198253.2																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157528471	157528471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	437	631	0	ENST00000346085.5:c.6196C>T	p.Pro2066Ser	p.P2066S	ENST00000346085	NM_020732.3	2066	Ccc/Tcc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623798	28623798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	269	629	0	ENST00000241453.7:c.856G>A	p.Glu286Lys	p.E286K	ENST00000241453	NM_004119.2	286	Gaa/Aaa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231473	5231473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	493	722	0	ENST00000357368.4:c.2003C>T	p.Pro668Leu	p.P668L	ENST00000357368	NM_002850.3	668	cCc/cTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553184	106553185	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	462	600	4	ENST00000369096.4:c.1149_1150delinsAA	p.Glu384Lys	p.E384K	ENST00000369096	NM_001198.3	383	acGGaa/acAAaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970983	21970990	+	frameshift_variant	Frame_Shift_Del	DEL	ATCGCGAT	ATCGCGAT	-			P-0043852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	652	515	0	ENST00000304494.5:c.368_375del	p.His123ArgfsTer16	p.H123Rfs*16	ENST00000304494	NM_000077.4	123	cATCGCGAT/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970983	21970990	+	frameshift_variant	Frame_Shift_Del	DEL	ATCGCGAT	ATCGCGAT	-			P-0043852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	652	515	0	ENST00000304494.5:c.368_375del	p.His123ArgfsTer16	p.H123Rfs*16	ENST00000304494	NM_000077.4	123	cATCGCGAT/c																																																																														
RB1	5925	MSKCC	GRCh37	13	48955499	48955499	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	392	340	0	ENST00000267163.4:c.1615G>T	p.Glu539Ter	p.E539*	ENST00000267163	NM_000321.2	539	Gaa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528623	89528623	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1237297238		P-0043867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	133	234	0	ENST00000336596.2:c.2923C>T	p.Gln975Ter	p.Q975*	ENST00000336596	NM_005233.5	975	Caa/Taa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276641	115276641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	108	485	0	ENST00000438362.2:c.818A>G	p.Asp273Gly	p.D273G	ENST00000438362	NM_001242891.1	273	gAt/gGt																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40447710	40447710	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	88	618	0	ENST00000345506.4:c.449A>G	p.Glu150Gly	p.E150G	ENST00000345506	NM_003152.3	150	gAg/gGg																																																																														
ALK	238	MSKCC	GRCh37	2	29462697	29462697	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0043867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	183	644	0	ENST00000389048.3:c.2205-1G>C		p.X735_splice	ENST00000389048	NM_004304.4	735																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467670	66467670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	86	303	0	ENST00000273854.3:c.599G>A	p.Arg200Lys	p.R200K	ENST00000273854	NM_004439.5	200	aGa/aAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521433	187521433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	91	462	0	ENST00000441802.2:c.11722G>A	p.Asp3908Asn	p.D3908N	ENST00000441802	NM_005245.3	3908	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	24	388	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422708	49422708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	109	636	0	ENST00000301067.7:c.14285G>A	p.Gly4762Asp	p.G4762D	ENST00000301067	NM_003482.3	4762	gGc/gAc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	110	565	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	159	808	0	ENST00000171111.5:c.1802G>C	p.Arg601Pro	p.R601P	ENST00000171111	NM_203500.1	601	cGg/cCg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11095970	11095970	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	125	809	0	ENST00000344626.4:c.244A>T	p.Lys82Ter	p.K82*	ENST00000344626	NM_003072.3	82	Aag/Tag																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873020	136873020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147198552		P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	30	460	1	ENST00000241393.3:c.478G>A	p.Val160Ile	p.V160I	ENST00000241393	NM_003467.2	160	Gtc/Atc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80169106	80169106	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	29	325	0	ENST00000265081.6:c.3302G>T	p.Arg1101Ile	p.R1101I	ENST00000265081	NM_002439.4	1101	aGa/aTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939672	76939672	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	48	628	0	ENST00000373344.5:c.1076T>C	p.Leu359Pro	p.L359P	ENST00000373344	NM_000489.3	359	cTg/cCg																																																																														
XIAP	331	MSKCC	GRCh37	X	123020354	123020354	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	36	375	0	ENST00000355640.3:c.842A>T	p.Lys281Met	p.K281M	ENST00000355640		281	aAg/aTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195710	123195710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	46	575	0	ENST00000218089.9:c.1626del	p.Thr543GlnfsTer33	p.T543Qfs*33	ENST00000218089	NM_001042749.1	542	Ggg/gg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	38	363	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6029571	6029571	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200513014		P-0044045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	30	375	0	ENST00000265849.7:c.1004A>G	p.Asn335Ser	p.N335S	ENST00000265849	NM_000535.5	335	aAt/aGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47059154	47059154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	54	444	0	ENST00000409792.3:c.7507del	p.Glu2503LysfsTer10	p.E2503Kfs*10	ENST00000409792	NM_014159.6	2503	Gaa/aa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162054	47162055	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0044045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	55	298	0	ENST00000409792.3:c.4070_4071dup	p.Leu1358PhefsTer16	p.L1358Ffs*16	ENST00000409792	NM_014159.6	1357	-/TT																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	503	475	1	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602620	10602620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	927	519	1	ENST00000171111.5:c.958C>T	p.Arg320Trp	p.R320W	ENST00000171111	NM_203500.1	320	Cgg/Tgg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18699288	18699288	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867629250		P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	382	263	0	ENST00000266497.5:c.3389G>A	p.Gly1130Glu	p.G1130E	ENST00000266497		1130	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971058	21971058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	285	270	0	ENST00000304494.5:c.300del	p.Ala102ArgfsTer44	p.A102Rfs*44	ENST00000304494	NM_000077.4	100	gcC/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971058	21971058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	285	270	0	ENST00000304494.5:c.300del	p.Ala102ArgfsTer44	p.A102Rfs*44	ENST00000304494	NM_000077.4	100	gcC/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971058	21971058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	285	270	0	ENST00000304494.5:c.300del	p.Ala102ArgfsTer44	p.A102Rfs*44	ENST00000304494	NM_000077.4	100	gcC/gc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965643	93965643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762713500		P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	286	360	0	ENST00000369303.4:c.2285G>A	p.Arg762His	p.R762H	ENST00000369303	NM_004440.3	762	cGc/cAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29684080	29684080	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587781502		P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	357	401	0	ENST00000358273.4:c.7841A>G	p.Lys2614Arg	p.K2614R	ENST00000358273	NM_001042492.2	2614	aAg/aGg																																																																														
MPL	4352	MSKCC	GRCh37	1	43814980	43814980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	383	376	0	ENST00000372470.3:c.1515C>A	p.Ser505Arg	p.S505R	ENST00000372470	NM_005373.2	505	agC/agA																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59871025	59871025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	264	300	0	ENST00000259008.2:c.1406G>C	p.Ser469Thr	p.S469T	ENST00000259008	NM_032043.2	469	aGt/aCt																																																																														
AURKA	6790	MSKCC	GRCh37	20	54945618	54945618	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	254	250	0	ENST00000312783.6:c.952C>G	p.Leu318Val	p.L318V	ENST00000312783	NM_198436.1	318	Ctt/Gtt																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202781	128202781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	411	553	0	ENST00000341105.2:c.939C>A	p.His313Gln	p.H313Q	ENST00000341105	NM_032638.4	313	caC/caA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127463	55127463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	391	417	0	ENST00000257290.5:c.251T>C	p.Val84Ala	p.V84A	ENST00000257290	NM_006206.4	84	gTc/gCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549314	187549314	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	350	340	0	ENST00000441802.2:c.4804G>T	p.Glu1602Ter	p.E1602*	ENST00000441802	NM_005245.3	1602	Gag/Tag																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64290020	64290020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	167	396	0	ENST00000370651.3:c.463A>G	p.Lys155Glu	p.K155E	ENST00000370651	NM_003463.4	155	Aaa/Gaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100207	157100207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	19	41	0	ENST00000346085.5:c.1144C>T	p.Pro382Ser	p.P382S	ENST00000346085	NM_020732.3	382	Ccc/Tcc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836861	151836861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	264	401	0	ENST00000262189.6:c.14359G>T	p.Ala4787Ser	p.A4787S	ENST00000262189	NM_170606.2	4787	Gct/Tct																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981903	70981903	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs747860295		P-0044057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	457	526	0	ENST00000276594.2:c.193G>T	p.Ala65Ser	p.A65S	ENST00000276594	NM_024504.3	65	Gcc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	232	645	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																														
HGF	3082	MSKCC	GRCh37	7	81359084	81359084	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747693036		P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	157	374	0	ENST00000222390.5:c.877A>G	p.Met293Val	p.M293V	ENST00000222390	NM_000601.4	293	Atg/Gtg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456671	32456671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	65	258	0	ENST00000332351.3:c.221G>A	p.Arg74Gln	p.R74Q	ENST00000332351	NM_024426.4	74	cGg/cAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715350	117715350	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1466068877		P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	47	325	0	ENST00000368508.3:c.1139G>T	p.Arg380Ile	p.R380I	ENST00000368508	NM_002944.2	380	aGa/aTa																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	212	630	0	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176176008	176176008	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	118	352	0	ENST00000367669.3:c.107C>A	p.Ser36Ter	p.S36*	ENST00000367669	NM_022457.5	36	tCg/tAg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047173	77047173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	286	589	0	ENST00000356341.3:c.1371G>C	p.Met457Ile	p.M457I	ENST00000356341	NM_002576.4	457	atG/atC																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118706	115118706	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	91	548	0	ENST00000257566.3:c.635A>C	p.Asn212Thr	p.N212T	ENST00000257566	NM_016569.3	212	aAc/aCc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423642	88423642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	72	423	0	ENST00000360948.2:c.2193G>T	p.Met731Ile	p.M731I	ENST00000360948	NM_001012338.2	731	atG/atT																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500646	99500646	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779623011		P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	81	485	0	ENST00000268035.6:c.4079C>T	p.Pro1360Leu	p.P1360L	ENST00000268035	NM_000875.3	1360	cCg/cTg																																																																														
SRC	6714	MSKCC	GRCh37	20	36026227	36026227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	277	797	0	ENST00000358208.4:c.829G>T	p.Gly277Cys	p.G277C	ENST00000358208		277	Ggc/Tgc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871240	35871240	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs749131336		P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	107	403	1	ENST00000303115.3:c.462C>A	p.His154Gln	p.H154Q	ENST00000303115	NM_002185.3	154	caC/caA																																																																														
NSD1	64324	MSKCC	GRCh37	5	176666785	176666785	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	81	432	0	ENST00000439151.2:c.4221A>T	p.Lys1407Asn	p.K1407N	ENST00000439151	NM_022455.4	1407	aaA/aaT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974330	93974330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	79	421	1	ENST00000369303.4:c.1724G>T	p.Gly575Val	p.G575V	ENST00000369303	NM_004440.3	575	gGc/gTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020560	69020560	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	209	405	0	ENST00000288368.4:c.2932G>T	p.Glu978Ter	p.E978*	ENST00000288368	NM_024870.2	978	Gag/Tag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342863	87342863	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	164	445	0	ENST00000277120.3:c.1148G>T	p.Gly383Val	p.G383V	ENST00000277120		383	gGa/gTa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250364	110250364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	124	701	0	ENST00000374672.4:c.311A>G	p.Asp104Gly	p.D104G	ENST00000374672	NM_004235.4	104	gAc/gGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028841	47028841	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	216	767	0	ENST00000329236.7:c.146del	p.Gly49AlafsTer36	p.G49Afs*36	ENST00000329236	NM_001204466.1	49	Ggc/gc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	79	207	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
HGF	3082	MSKCC	GRCh37	7	81386505	81386505	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1305340910		P-0044100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	24	371	0	ENST00000222390.5:c.482G>T	p.Ser161Ile	p.S161I	ENST00000222390	NM_000601.4	161	aGc/aTc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202797	128202797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	229	930	0	ENST00000341105.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000341105	NM_032638.4	308	cGg/cAg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456629	32456629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	63	355	2	ENST00000332351.3:c.263G>A	p.Gly88Asp	p.G88D	ENST00000332351	NM_024426.4	88	gGc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416395	49416395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	88	582	1	ENST00000301067.7:c.16316G>A	p.Arg5439Gln	p.R5439Q	ENST00000301067	NM_003482.3	5439	cGg/cAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133236016	133236016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			680	76	805	0	ENST00000320574.5:c.3140G>A	p.Gly1047Glu	p.G1047E	ENST00000320574	NM_006231.2	1047	gGg/gAg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371778	45371778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	52	443	0	ENST00000262160.6:c.1213G>C	p.Val405Leu	p.V405L	ENST00000262160	NM_005901.5	405	Gtc/Ctc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928973	49928973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			798	181	905	0	ENST00000296474.3:c.3393G>C	p.Glu1131Asp	p.E1131D	ENST00000296474	NM_002447.2	1131	gaG/gaC																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046592	30046596	+	missense_variant	Missense_Mutation	ONP	CTTTC	CTTTC	GTTTC			P-0044100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			735	109	672	0	ENST00000331968.5:c.2591delinsC	p.Ser864Thr	p.S864T	ENST00000331968	NM_002742.2	863	GAAAGt/GAAACt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	160	758	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CBL	867	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs397517076		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	32	259	0	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602565	10602565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	178	875	1	ENST00000171111.5:c.1013C>T	p.Ser338Leu	p.S338L	ENST00000171111	NM_203500.1	338	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144147	11144147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064795161		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	175	829	1	ENST00000344626.4:c.3728G>A	p.Arg1243Gln	p.R1243Q	ENST00000344626	NM_003072.3	1243	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212113	36212113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757405245		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	146	706	2	ENST00000222270.7:c.1864C>T	p.Pro622Ser	p.P622S	ENST00000222270	NM_014727.1	622	Ccc/Tcc																																																																														
CCND2	894	MSKCC	GRCh37	12	4385218	4385218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	163	462	0	ENST00000261254.3:c.243G>T	p.Met81Ile	p.M81I	ENST00000261254	NM_001759.3	81	atG/atT																																																																														
TET1	80312	MSKCC	GRCh37	10	70450873	70450873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	143	532	0	ENST00000373644.4:c.5713G>T	p.Gly1905Cys	p.G1905C	ENST00000373644	NM_030625.2	1905	Ggc/Tgc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245403	46245403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	82	451	0	ENST00000334344.6:c.3497G>T	p.Gly1166Val	p.G1166V	ENST00000334344	NM_152641.2	1166	gGg/gTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245776	46245776	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	67	433	0	ENST00000334344.6:c.3872del	p.Gly1291GlufsTer4	p.G1291Efs*4	ENST00000334344	NM_152641.2	1290	gtG/gt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476298	88476298	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs373273419		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	104	635	2	ENST00000360948.2:c.1834C>A	p.Pro612Thr	p.P612T	ENST00000360948	NM_001012338.2	612	Ccc/Acc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857244	9857244	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1277391984		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	95	588	0	ENST00000330684.3:c.4157C>A	p.Pro1386His	p.P1386H	ENST00000330684	NM_001134407.1	1386	cCt/cAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923784	72923784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	194	651	0	ENST00000268489.5:c.3294G>T	p.Lys1098Asn	p.K1098N	ENST00000268489	NM_006885.3	1098	aaG/aaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483930	212483930	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1241007104		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	48	492	0	ENST00000342788.4:c.2273G>C	p.Gly758Ala	p.G758A	ENST00000342788	NM_005235.2	758	gGt/gCt																																																																														
PAK7	0	MSKCC	GRCh37	20	9561384	9561384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	104	544	0	ENST00000353224.5:c.398G>A	p.Ser133Asn	p.S133N	ENST00000353224	NM_177990.2	133	aGc/aAc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119545703	119545703	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs1309366195		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	79	288	0	ENST00000316626.5:c.1235-1G>C		p.X412_splice	ENST00000316626		412																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430605	181430605	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs981843968		P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	180	625	0	ENST00000325404.1:c.457G>T	p.Val153Leu	p.V153L	ENST00000325404	NM_003106.3	153	Gtg/Ttg																																																																														
KDR	3791	MSKCC	GRCh37	4	55972006	55972006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	79	387	0	ENST00000263923.4:c.1638C>A	p.His546Gln	p.H546Q	ENST00000263923	NM_002253.2	546	caC/caA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541451	187541451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	115	447	0	ENST00000441802.2:c.6289G>T	p.Gly2097Cys	p.G2097C	ENST00000441802	NM_005245.3	2097	Ggc/Tgc																																																																														
STK19	8859	MSKCC	GRCh37	6	31940183	31940183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	164	997	1	ENST00000375331.2:c.325C>T	p.Arg109Trp	p.R109W	ENST00000375331	NM_004197.1	109	Cgg/Tgg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730078	41730078	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	102	511	0	ENST00000242208.4:c.451G>T	p.Glu151Ter	p.E151*	ENST00000242208	NM_002192.2	151	Gag/Tag																																																																														
HGF	3082	MSKCC	GRCh37	7	81340800	81340800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	32	196	0	ENST00000222390.5:c.1441G>C	p.Asp481His	p.D481H	ENST00000222390	NM_000601.4	481	Gac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0044246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	210	293	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
STK11	6794	MSKCC	GRCh37	19	1207092	1207092	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs778376925		P-0044246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	359	758	0	ENST00000326873.7:c.180C>A	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/taA																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984451	201984451	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	A	A	-			P-0044246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	179	407	0	ENST00000359651.3:c.1116del	p.Ter372TrpfsTer75	p.*372Wfs*75	ENST00000359651		372	tgA/tg																																																																														
ATM	472	MSKCC	GRCh37	11	108205781	108205781	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs879254209		P-0044246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	123	283	0	ENST00000278616.4:c.8096C>G	p.Pro2699Arg	p.P2699R	ENST00000278616	NM_000051.3	2699	cCa/cGa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247243	153247243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	230	270	0	ENST00000281708.4:c.1559A>G	p.Asp520Gly	p.D520G	ENST00000281708	NM_033632.3	520	gAt/gGt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	461	640	0	ENST00000171111.5:c.556G>A	p.Gly186Ser	p.G186S	ENST00000171111	NM_203500.1	186	Ggc/Agc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31423030	31423030	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	147	394	0	ENST00000344624.3:c.3283C>T	p.Arg1095Ter	p.R1095*	ENST00000344624		1095	Cga/Tga																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245912888	245912888	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767335863		P-0044248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	135	265	0	ENST00000388985.4:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000388985		422	Gac/Aac																																																																														
SUFU	51684	MSKCC	GRCh37	10	104359267	104359267	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	299	500	0	ENST00000369902.3:c.988C>T	p.Gln330Ter	p.Q330*	ENST00000369902	NM_016169.3	330	Cag/Tag																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200098	67200098	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	48	505	0	ENST00000312629.5:c.485G>C	p.Arg162Pro	p.R162P	ENST00000312629	NM_003952.2	162	cGa/cCa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976101	18976101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755841787		P-0044248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	342	559	0	ENST00000262803.5:c.2861G>A	p.Arg954Gln	p.R954Q	ENST00000262803	NM_002911.3	954	cGg/cAg																																																																														
ATR	545	MSKCC	GRCh37	3	142238584	142238584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	47	238	0	ENST00000350721.4:c.4309G>T	p.Gly1437Cys	p.G1437C	ENST00000350721	NM_001184.3	1437	Ggc/Tgc																																																																														
SDHA	6389	MSKCC	GRCh37	5	251558	251558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	55	473	1	ENST00000264932.6:c.1769G>T	p.Gly590Val	p.G590V	ENST00000264932	NM_004168.2	590	gGc/gTc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672813	86672813	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763915835		P-0044248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	139	251	0	ENST00000274376.6:c.2300C>T	p.Ser767Leu	p.S767L	ENST00000274376	NM_002890.2	767	tCg/tTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324935	31324935	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0044248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	164	549	0	ENST00000412585.2:c.1A>T	p.Met1?	p.M1?	ENST00000412585	NM_005514.6	1	Atg/Ttg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163233	32163233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	506	820	1	ENST00000375023.3:c.5993G>T	p.Gly1998Val	p.G1998V	ENST00000375023	NM_004557.3	1998	gGa/gTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0044287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	57	369	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0044287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	95	627	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391205	139391205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	97	788	2	ENST00000277541.6:c.6986G>T	p.Ser2329Ile	p.S2329I	ENST00000277541	NM_017617.3	2329	aGt/aTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70346832	70346832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	74	444	0	ENST00000374080.3:c.2699T>C	p.Leu900Pro	p.L900P	ENST00000374080		900	cTg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	215	782	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974751	21974751	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	103	224	0	ENST00000304494.5:c.76G>T	p.Glu26Ter	p.E26*	ENST00000304494	NM_000077.4	26	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974751	21974751	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	103	224	0	ENST00000304494.5:c.76G>T	p.Glu26Ter	p.E26*	ENST00000304494	NM_000077.4	26	Gag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108172506	108172506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	51	299	0	ENST00000278616.4:c.5309C>T	p.Ser1770Leu	p.S1770L	ENST00000278616	NM_000051.3	1770	tCa/tTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974739	21974739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	114	248	1	ENST00000304494.5:c.88G>T	p.Ala30Ser	p.A30S	ENST00000304494	NM_000077.4	30	Gcg/Tcg																																																																														
ATM	472	MSKCC	GRCh37	11	108164046	108164046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	17	148	0	ENST00000278616.4:c.4618G>A	p.Asp1540Asn	p.D1540N	ENST00000278616	NM_000051.3	1540	Gac/Aac																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739485	145739485	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772074149		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	117	770	1	ENST00000428558.2:c.1885C>T	p.Arg629Trp	p.R629W	ENST00000428558	NM_004260.3	629	Cgg/Tgg																																																																														
AKT1	207	MSKCC	GRCh37	14	105243030	105243030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	238	791	3	ENST00000349310.3:c.253G>A	p.Glu85Lys	p.E85K	ENST00000349310	NM_001014432.1	85	Gaa/Aaa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434170	121434170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	155	768	0	ENST00000257555.6:c.1061C>A	p.Thr354Lys	p.T354K	ENST00000257555		354	aCg/aAg																																																																														
ALK	238	MSKCC	GRCh37	2	29432665	29432665	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs543620241		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	61	671	0	ENST00000389048.3:c.3823C>T	p.Arg1275Ter	p.R1275*	ENST00000389048	NM_004304.4	1275	Cga/Tga																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075445	8075554	+	splice_donor_variant,splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTGAAAGGAGAGGAAGCTACTTTGGTCATAAGCGAAGAGCAATCACAGCCTCTCCCATTTTAGTGTCACATATTTATCCAGATTACAGCAGCATTACATCCTCTACTTAC	CTGAAAGGAGAGGAAGCTACTTTGGTCATAAGCGAAGAGCAATCACAGCCTCTCCCATTTTAGTGTCACATATTTATCCAGATTACAGCAGCATTACATCCTCTACTTAC	-			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	44	336	0	ENST00000377482.5:c.125+1_126-1del		p.X42_splice	ENST00000377482	NM_018948.3	42																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447284	49447284	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	178	616	0	ENST00000301067.7:c.814G>T	p.Glu272Ter	p.E272*	ENST00000301067	NM_003482.3	272	Gaa/Taa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438085	110438085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1194924964		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	108	439	1	ENST00000375856.3:c.316G>A	p.Asp106Asn	p.D106N	ENST00000375856	NM_003749.2	106	Gac/Aac																																																																														
AKT1	207	MSKCC	GRCh37	14	105246510	105246510	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	102	705	0	ENST00000349310.3:c.90G>C	p.Lys30Asn	p.K30N	ENST00000349310	NM_001014432.1	30	aaG/aaC																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779840	3779840	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	112	823	1	ENST00000262367.5:c.5208G>C	p.Lys1736Asn	p.K1736N	ENST00000262367	NM_004380.2	1736	aaG/aaC																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350102	89350102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	191	786	0	ENST00000301030.4:c.2848G>T	p.Asp950Tyr	p.D950Y	ENST00000301030	NM_001256183.1	950	Gac/Tac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89806432	89806432	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs878853665		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	168	584	0	ENST00000389301.3:c.3904T>C	p.Trp1302Arg	p.W1302R	ENST00000389301	NM_000135.2	1302	Tgg/Cgg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217641	7217641	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	62	523	0	ENST00000380728.2:c.286G>C	p.Glu96Gln	p.E96Q	ENST00000380728		96	Gag/Cag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52676062	52676062	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A	rs1258762163		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	48	274	3	ENST00000394830.3:c.996-1G>T		p.X332_splice	ENST00000394830	NM_018313.4	332																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138461621	138461621	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C	rs1450143044		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	103	359	0	ENST00000289153.2:c.400C>G	p.Leu134Val	p.L134V	ENST00000289153	NM_006219.2	134	Ctg/Gtg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141079	55141080	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	146	387	1	ENST00000257290.5:c.1725_1726delinsTT	p.Asp576Tyr	p.D576Y	ENST00000257290	NM_006206.4	575	gtGGac/gtTTac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540863	187540863	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	104	343	0	ENST00000441802.2:c.6877T>C	p.Ser2293Pro	p.S2293P	ENST00000441802	NM_005245.3	2293	Tct/Cct																																																																														
APC	324	MSKCC	GRCh37	5	112178100	112178100	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878853466		P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	54	397	0	ENST00000257430.4:c.6809C>T	p.Ser2270Phe	p.S2270F	ENST00000257430	NM_000038.5	2270	tCt/tTt																																																																														
FYN	2534	MSKCC	GRCh37	6	112015871	112015871	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	67	446	0	ENST00000368678.4:c.1070G>C	p.Arg357Thr	p.R357T	ENST00000368678		357	aGa/aCa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786887	135786887	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	76	442	0	ENST00000298552.3:c.982C>G	p.Gln328Glu	p.Q328E	ENST00000298552	NM_001162426.1	328	Cag/Gag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0044380-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	1363	307	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044380-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	158	558	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033633	48033633	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs764507968		P-0044380-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	99	293	0	ENST00000234420.5:c.3844A>G	p.Thr1282Ala	p.T1282A	ENST00000234420	NM_000179.2	1282	Act/Gct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0044402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	254	532	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321357	1321357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	128	428	1	ENST00000381566.1:c.398C>T	p.Ala133Val	p.A133V	ENST00000381566		133	gCa/gTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0044411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	154	603	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0044411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	248	623	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70333045	70333045	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	166	687	0	ENST00000373644.4:c.950T>A	p.Leu317His	p.L317H	ENST00000373644	NM_030625.2	317	cTt/cAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348691	89348691	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs142828350		P-0044411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	157	753	0	ENST00000301030.4:c.4259T>C	p.Ile1420Thr	p.I1420T	ENST00000301030	NM_001256183.1	1420	aTt/aCt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637566	52637601	+	inframe_deletion	In_Frame_Del	DEL	TCTTCCTCTATTTCTTTTGGCAATTTTTCCTTTCTC	TCTTCCTCTATTTCTTTTGGCAATTTTTCCTTTCTC	-			P-0044411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	12	323	0	ENST00000394830.3:c.2715_2750del	p.Glu905_Glu916del	p.E905_E916del	ENST00000394830	NM_018313.4	905	gaGAGAAAGGAAAAATTGCCAAAAGAAATAGAGGAAGAt/gat																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500792	149500792	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1480906257		P-0044411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	216	580	0	ENST00000261799.4:c.2438G>A	p.Gly813Asp	p.G813D	ENST00000261799	NM_002609.3	813	gGc/gAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29654596	29654597	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	39	309	0	ENST00000358273.4:c.5350dup	p.Tyr1784LeufsTer6	p.Y1784Lfs*6	ENST00000358273	NM_001042492.2	1783	tat/taTt																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0044481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	109	454	0	ENST00000288135.5:c.1504_1509dup	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532809	187532809	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	166	500	0	ENST00000441802.2:c.9584A>G	p.Tyr3195Cys	p.Y3195C	ENST00000441802	NM_005245.3	3195	tAc/tGc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547234	106547234	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	38	290	0	ENST00000369096.4:c.471C>G	p.Asn157Lys	p.N157K	ENST00000369096	NM_001198.3	157	aaC/aaG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	92	440	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9781509	9781509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	126	531	0	ENST00000377346.4:c.1819G>A	p.Glu607Lys	p.E607K	ENST00000377346	NM_005026.3	607	Gag/Aag																																																																														
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs1057519877		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	46	481	0	ENST00000558401.1:c.3G>A	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578458	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	207	926	4	ENST00000269305.4:c.472_473delinsTT	p.Arg158Phe	p.R158F	ENST00000269305	NM_001126112.2	158	CGc/TTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139822	55139822	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868384918		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	37	559	0	ENST00000257290.5:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000257290	NM_006206.4	495	Gag/Aag																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946060	13946060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	45	290	0	ENST00000405192.2:c.1036G>A	p.Glu346Lys	p.E346K	ENST00000405192	NM_001163147.1	346	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372495	118372495	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	82	594	0	ENST00000534358.1:c.6428C>G	p.Ser2143Ter	p.S2143*	ENST00000534358	NM_005933.3	2143	tCa/tGa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602848	10602848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	200	1051	1	ENST00000171111.5:c.730G>A	p.Glu244Lys	p.E244K	ENST00000171111	NM_203500.1	244	Gag/Aag																																																																														
PARP1	142	MSKCC	GRCh37	1	226549706	226549706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	68	485	0	ENST00000366794.5:c.2927C>T	p.Ser976Leu	p.S976L	ENST00000366794	NM_001618.3	976	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151833982	151833982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	45	492	0	ENST00000262189.6:c.14671G>A	p.Glu4891Lys	p.E4891K	ENST00000262189	NM_170606.2	4891	Gaa/Aaa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400855	72400855	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	50	343	0	ENST00000357731.5:c.316C>A	p.Gln106Lys	p.Q106K	ENST00000357731	NM_173808.2	106	Cag/Aag																																																																														
RET	5979	MSKCC	GRCh37	10	43600468	43600468	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	91	632	0	ENST00000355710.3:c.694G>C	p.Glu232Gln	p.E232Q	ENST00000355710	NM_020975.4	232	Gag/Cag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118353178	118353178	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	36	304	0	ENST00000534358.1:c.4054A>G	p.Ser1352Gly	p.S1352G	ENST00000534358	NM_005933.3	1352	Agt/Ggt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49441782	49441782	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1214991700		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	43	600	0	ENST00000301067.7:c.4202C>G	p.Ser1401Cys	p.S1401C	ENST00000301067	NM_003482.3	1401	tCt/tGt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572122	95572122	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	29	316	0	ENST00000343455.3:c.2988-2A>C		p.X996_splice	ENST00000343455	NM_177438.2	996																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675055	40675055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	213	800	0	ENST00000249776.8:c.19C>T	p.Pro7Ser	p.P7S	ENST00000249776	NM_033286.3	7	Ccg/Tcg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129182	2129182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	164	864	1	ENST00000219476.3:c.3116C>T	p.Thr1039Met	p.T1039M	ENST00000219476	NM_000548.3	1039	aCg/aTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640763	3640763	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs999262527		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	58	668	0	ENST00000294008.3:c.2876C>T	p.Ser959Phe	p.S959F	ENST00000294008	NM_032444.2	959	tCc/tTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3656561	3656561	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs768845750		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	143	845	0	ENST00000294008.3:c.674G>C	p.Arg225Thr	p.R225T	ENST00000294008	NM_032444.2	225	aGa/aCa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934531	9934531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	107	426	1	ENST00000330684.3:c.1624G>T	p.Gly542Cys	p.G542C	ENST00000330684	NM_001134407.1	542	Ggc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827575	72827575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	117	700	0	ENST00000268489.5:c.9006G>T	p.Lys3002Asn	p.K3002N	ENST00000268489	NM_006885.3	3002	aaG/aaT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348335	89348335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1232258259		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	156	990	0	ENST00000301030.4:c.4615G>A	p.Glu1539Lys	p.E1539K	ENST00000301030	NM_001256183.1	1539	Gag/Aag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246785	41246785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	38	479	0	ENST00000357654.3:c.763G>C	p.Glu255Gln	p.E255Q	ENST00000357654	NM_007294.3	255	Gag/Cag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436128	56436128	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1170091784		P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	55	729	0	ENST00000407977.2:c.1009C>G	p.Arg337Gly	p.R337G	ENST00000407977		337	Cga/Gga																																																																														
YES1	7525	MSKCC	GRCh37	18	724516	724516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	58	268	0	ENST00000314574.4:c.1540G>C	p.Asp514His	p.D514H	ENST00000314574	NM_005433.3	514	Gat/Cat																																																																														
BCL2	596	MSKCC	GRCh37	18	60795989	60795989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	68	491	0	ENST00000333681.4:c.589G>T	p.Ala197Ser	p.A197S	ENST00000333681		197	Gcc/Tcc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198272784	198272784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	55	493	0	ENST00000335508.6:c.1177G>A	p.Asp393Asn	p.D393N	ENST00000335508	NM_012433.2	393	Gat/Aat																																																																														
CASP8	841	MSKCC	GRCh37	2	202131273	202131273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	90	447	0	ENST00000358485.4:c.241C>T	p.Leu81Phe	p.L81F	ENST00000358485	NM_001080125.1	81	Ctc/Ttc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662214	227662214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	129	868	0	ENST00000305123.5:c.1241C>T	p.Ala414Val	p.A414V	ENST00000305123	NM_005544.2	414	gCt/gTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230899	66230899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	53	329	0	ENST00000273854.3:c.2072G>T	p.Ser691Ile	p.S691I	ENST00000273854	NM_004439.5	691	aGt/aTt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509762	106509762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	80	570	0	ENST00000359195.3:c.1756C>A	p.Pro586Thr	p.P586T	ENST00000359195	NM_002649.2	586	Cca/Aca																																																																														
PREX2	80243	MSKCC	GRCh37	8	68934305	68934305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	100	482	0	ENST00000288368.4:c.371G>T	p.Ser124Ile	p.S124I	ENST00000288368	NM_024870.2	124	aGt/aTt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211500	98211500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	94	605	0	ENST00000331920.6:c.3655G>A	p.Asp1219Asn	p.D1219N	ENST00000331920	NM_000264.3	1219	Gat/Aat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798873	135798873	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	34	240	0	ENST00000298552.3:c.370A>T	p.Thr124Ser	p.T124S	ENST00000298552	NM_001162426.1	124	Act/Tct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404364	139404364	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	133	903	0	ENST00000277541.6:c.2790C>G	p.Phe930Leu	p.F930L	ENST00000277541	NM_017617.3	930	ttC/ttG																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504057	123504057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	60	304	0	ENST00000371139.4:c.233G>T	p.Arg78Leu	p.R78L	ENST00000371139	NM_001114937.2	78	cGg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579316	7579320	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGT	CAAGT	-			P-0044539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	30	471	0	ENST00000269305.4:c.367_371del	p.Thr123HisfsTer24	p.T123Hfs*24	ENST00000269305	NM_001126112.2	123	ACTTGc/c																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204830	128204830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1460001422		P-0044575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	432	587	1	ENST00000341105.2:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000341105	NM_032638.4	204	cGa/cAa																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281657	49281657	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	235	529	0	ENST00000282018.3:c.704A>T	p.Glu235Val	p.E235V	ENST00000282018	NM_020377.2	235	gAa/gTa																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128305365	128305365	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	297	468	0	ENST00000265960.3:c.931C>T	p.Arg311Ter	p.R311*	ENST00000265960	NM_001006617.1	311	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0044656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	336	625	3	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656934	47656936	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1295803849		P-0044656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	123	320	1	ENST00000233146.2:c.1134_1136del	p.Glu378del	p.E378del	ENST00000233146	NM_000251.2	377	cAAGaa/caa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541504	187541504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1272319296		P-0044656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	19	415	0	ENST00000441802.2:c.6236C>T	p.Pro2079Leu	p.P2079L	ENST00000441802	NM_005245.3	2079	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	428	663	0	ENST00000269305.4:c.326T>G	p.Phe109Cys	p.F109C	ENST00000269305	NM_001126112.2	109	tTc/tGc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499520	89499520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0044661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	168	283	0	ENST00000336596.2:c.2690G>T	p.Arg897Met	p.R897M	ENST00000336596	NM_005233.5	897	aGg/aTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38981989	38981989	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	63	356	0	ENST00000357387.3:c.733C>T	p.Arg245Ter	p.R245*	ENST00000357387	NM_152756.3	245	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	461475	461475	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs998253161		P-0044661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	221	338	0	ENST00000399788.2:c.1045C>G	p.Arg349Gly	p.R349G	ENST00000399788	NM_001042603.1	349	Cga/Gga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11300386	11300386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	302	400	1	ENST00000361445.4:c.1760G>T	p.Arg587Leu	p.R587L	ENST00000361445	NM_004958.3	587	cGa/cTa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88651963	88651963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	69	316	0	ENST00000372037.3:c.310G>A	p.Glu104Lys	p.E104K	ENST00000372037	NM_004329.2	104	Gaa/Aaa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94201044	94201044	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	119	241	1	ENST00000323929.3:c.1033G>T	p.Glu345Ter	p.E345*	ENST00000323929	NM_005591.3	345	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434708	49434708	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	67	748	0	ENST00000301067.7:c.6845G>C	p.Arg2282Pro	p.R2282P	ENST00000301067	NM_003482.3	2282	cGg/cCg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521512	8521513	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0044661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	233	486	0	ENST00000356435.5:c.725_726delinsAA	p.Pro242Gln	p.P242Q	ENST00000356435		242	cCC/cAA																																																																														
ATRX	546	MSKCC	GRCh37	X	76937324	76937324	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	65	354	0	ENST00000373344.5:c.3424T>G	p.Ser1142Ala	p.S1142A	ENST00000373344	NM_000489.3	1142	Tca/Gca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	74	483	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780068		P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	20	652	0	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	75	375	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	71	374	0				ENST00000310581	NM_198253.2																																																																																
SETD2	29072	MSKCC	GRCh37	3	47163373	47163373	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	79	233	0	ENST00000409792.3:c.2753C>A	p.Ser918Ter	p.S918*	ENST00000409792	NM_014159.6	918	tCa/tAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49439953	49439953	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs749332791		P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	95	506	0	ENST00000301067.7:c.4588A>G	p.Met1530Val	p.M1530V	ENST00000301067	NM_003482.3	1530	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579854	7579854	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	93	540	0	ENST00000269305.4:c.59C>G	p.Ser20Ter	p.S20*	ENST00000269305	NM_001126112.2	20	tCa/tGa																																																																														
CALR	811	MSKCC	GRCh37	19	13054625	13054625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	60	348	0	ENST00000316448.5:c.1152C>G	p.Asp384Glu	p.D384E	ENST00000316448	NM_004343.3	384	gaC/gaG																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186503784	186503785	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	56	367	0	ENST00000323963.5:c.463_464del	p.Ile155CysfsTer10	p.I155Cfs*10	ENST00000323963		154	cAT/c																																																																														
MSH3	4437	MSKCC	GRCh37	5	80169084	80169084	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	52	352	0	ENST00000265081.6:c.3280G>T	p.Glu1094Ter	p.E1094*	ENST00000265081	NM_002439.4	1094	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874977	151874977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	25	154	0	ENST00000262189.6:c.7561G>C	p.Asp2521His	p.D2521H	ENST00000262189	NM_170606.2	2521	Gat/Cat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	47	269	0	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438647	49438647	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	53	568	0	ENST00000301067.7:c.4843C>T	p.Arg1615Ter	p.R1615*	ENST00000301067	NM_003482.3	1615	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427927	49427927	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	56	611	0	ENST00000301067.7:c.10663G>T	p.Glu3555Ter	p.E3555*	ENST00000301067	NM_003482.3	3555	Gag/Tag																																																																														
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	83	402	0	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409154	139409154	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	68	641	0	ENST00000277541.6:c.2015G>A	p.Gly672Glu	p.G672E	ENST00000277541	NM_017617.3	672	gGg/gAg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041518	14041518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149364215		P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	34	309	0	ENST00000311895.7:c.2065C>T	p.Arg689Cys	p.R689C	ENST00000311895	NM_005236.2	689	Cgt/Tgt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489535	56489535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	139	429	0	ENST00000267101.3:c.2000G>T	p.Arg667Leu	p.R667L	ENST00000267101	NM_001982.3	667	cGt/cTt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89811409	89811409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138013482		P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	90	691	0	ENST00000389301.3:c.3584G>A	p.Arg1195Gln	p.R1195Q	ENST00000389301	NM_000135.2	1195	cGg/cAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412233	139412233	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	78	633	1	ENST00000277541.6:c.1412T>A	p.Ile471Asn	p.I471N	ENST00000277541	NM_017617.3	471	aTt/aAt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16245494	16245494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	28	280	0	ENST00000375759.3:c.1469G>T	p.Cys490Phe	p.C490F	ENST00000375759	NM_015001.2	490	tGt/tTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16245539	16245539	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1471081719		P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	25	230	0	ENST00000375759.3:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000375759	NM_015001.2	505	cGc/cTc																																																																														
WT1	7490	MSKCC	GRCh37	11	32456630	32456630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	54	168	1	ENST00000332351.3:c.262G>A	p.Gly88Ser	p.G88S	ENST00000332351	NM_024426.4	88	Ggc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444387	49444387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	69	643	0	ENST00000301067.7:c.2984C>T	p.Pro995Leu	p.P995L	ENST00000301067	NM_003482.3	995	cCt/cTt																																																																														
SETD8	0	MSKCC	GRCh37	12	123868754	123868754	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	70	489	0	ENST00000330479.4:c.9A>T	p.Arg3Ser	p.R3S	ENST00000330479	NM_020382.3	3	agA/agT																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30396651	30396651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	21	64	0	ENST00000331968.5:c.68C>T	p.Ala23Val	p.A23V	ENST00000331968	NM_002742.2	23	gCg/gTg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610567	81610567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	30	265	0	ENST00000298171.2:c.2165A>G	p.Gln722Arg	p.Q722R	ENST00000298171	NM_000369.2	722	cAa/cGa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812223	212812223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	26	218	0	ENST00000342788.4:c.353C>A	p.Ala118Glu	p.A118E	ENST00000342788	NM_005235.2	118	gCa/gAa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081548	143081548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775054204		P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	79	351	0	ENST00000262992.4:c.1526C>T	p.Ser509Phe	p.S509F	ENST00000262992	NM_001101669.1	509	tCc/tTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675260	176675260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	44	259	0	ENST00000439151.2:c.4576C>A	p.Pro1526Thr	p.P1526T	ENST00000439151	NM_022455.4	1526	Cct/Act																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969088	93969088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	61	204	0	ENST00000369303.4:c.1908G>T	p.Glu636Asp	p.E636D	ENST00000369303	NM_004440.3	636	gaG/gaT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409801	139409801	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	70	699	0	ENST00000277541.6:c.1955C>A	p.Ser652Ter	p.S652*	ENST00000277541	NM_017617.3	652	tCg/tAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413962	139413962	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	85	728	0	ENST00000277541.6:c.798C>G	p.Cys266Trp	p.C266W	ENST00000277541	NM_017617.3	266	tgC/tgG																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794353	242794353	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1282191832		P-0044814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	70	986	1	ENST00000334409.5:c.589C>T	p.Arg197Ter	p.R197*	ENST00000334409	NM_005018.2	197	Cga/Tga																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032175	26032175	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	44	465	0	ENST00000244661.2:c.114G>C	p.Lys38Asn	p.K38N	ENST00000244661	NM_003537.3	38	aaG/aaC																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0044814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	52	584	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874014	151874014	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	38	412	0	ENST00000262189.6:c.8524A>T	p.Asn2842Tyr	p.N2842Y	ENST00000262189	NM_170606.2	2842	Aat/Tat																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184041	123184041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1375196362		P-0044814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	31	270	0	ENST00000218089.9:c.899C>T	p.Ala300Val	p.A300V	ENST00000218089	NM_001042749.1	300	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	17	480	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SRC	6714	MSKCC	GRCh37	20	36031751	36031751	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	47	884	0	ENST00000358208.4:c.1580A>T	p.Glu527Val	p.E527V	ENST00000358208		527	gAg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	237	877	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584540	187584540	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	68	487	0	ENST00000441802.2:c.3493G>C	p.Asp1165His	p.D1165H	ENST00000441802	NM_005245.3	1165	Gat/Cat																																																																														
RET	5979	MSKCC	GRCh37	10	43598018	43598018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753707182		P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	233	983	2	ENST00000355710.3:c.566G>A	p.Arg189His	p.R189H	ENST00000355710	NM_020975.4	189	cGc/cAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276256	15276256	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759704420		P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	248	999	2	ENST00000263388.2:c.5738C>T	p.Ala1913Val	p.A1913V	ENST00000263388	NM_000435.2	1913	gCg/gTg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716326	52716326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	308	851	0	ENST00000322088.6:c.770G>C	p.Trp257Ser	p.W257S	ENST00000322088	NM_014225.5	257	tGg/tCg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137046	64137046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	122	791	2	ENST00000334205.4:c.1557C>A	p.Phe519Leu	p.F519L	ENST00000334205	NM_003942.2	519	ttC/ttA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953536	32953536	+	stop_gained	Nonsense_Mutation	SNP	T	T	A	rs431825371		P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	79	584	0	ENST00000380152.3:c.8837T>A	p.Leu2946Ter	p.L2946*	ENST00000380152		2946	tTg/tAg																																																																														
RB1	5925	MSKCC	GRCh37	13	48947622	48947622	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	34	312	0	ENST00000267163.4:c.1209T>A	p.Tyr403Ter	p.Y403*	ENST00000267163	NM_000321.2	403	taT/taA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125455	47125455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	66	432	0	ENST00000409792.3:c.5815G>C	p.Asp1939His	p.D1939H	ENST00000409792	NM_014159.6	1939	Gat/Cat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448609	89448609	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	66	615	0	ENST00000336596.2:c.1573G>C	p.Glu525Gln	p.E525Q	ENST00000336596	NM_005233.5	525	Gag/Cag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584645	187584645	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	60	536	1	ENST00000441802.2:c.3388G>T	p.Glu1130Ter	p.E1130*	ENST00000441802	NM_005245.3	1130	Gag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589598	67589599	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCAGTT			P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	78	282	0	ENST00000274335.5:c.1365_1370dup	p.Phe456_Gln457dup	p.F456_Q457dup	ENST00000274335		456	act/acTCAGTTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188861	32188861	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	98	1030	0	ENST00000375023.3:c.693T>A	p.Cys231Ter	p.C231*	ENST00000375023	NM_004557.3	231	tgT/tgA																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981578	70981578	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1457	124	1077	0	ENST00000276594.2:c.518C>A	p.Ser173Ter	p.S173*	ENST00000276594	NM_024504.3	173	tCa/tAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	284	310	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044925	47044925	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	248	906	0	ENST00000329236.7:c.2017G>T	p.Glu673Ter	p.E673*	ENST00000329236	NM_001204466.1	673	Gag/Tag																																																																														
PGR	5241	MSKCC	GRCh37	11	100998664	100998664	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	226	771	0	ENST00000325455.5:c.1138T>A	p.Phe380Ile	p.F380I	ENST00000325455	NM_001202474.3	380	Ttc/Atc																																																																														
ATM	472	MSKCC	GRCh37	11	108180942	108180942	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	61	223	0	ENST00000278616.4:c.5818G>T	p.Glu1940Ter	p.E1940*	ENST00000278616	NM_000051.3	1940	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	406333	406333	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	86	492	0	ENST00000399788.2:c.4108G>C	p.Glu1370Gln	p.E1370Q	ENST00000399788	NM_001042603.1	1370	Gaa/Caa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762184	43762184	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	99	634	1	ENST00000382044.4:c.1261G>T	p.Glu421Ter	p.E421*	ENST00000382044	NM_001141980.1	421	Gag/Tag																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785784	50785784	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	132	437	0	ENST00000398568.2:c.774A>T	p.Lys258Asn	p.K258N	ENST00000398568	NM_001042412.1	258	aaA/aaT																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825473	50825473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	89	264	0	ENST00000398568.2:c.2104G>T	p.Ala702Ser	p.A702S	ENST00000398568	NM_001042412.1	702	Gca/Tca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821140	72821140	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs780518082		P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	203	623	1	ENST00000268489.5:c.11035G>T	p.Val3679Leu	p.V3679L	ENST00000268489	NM_006885.3	3679	Gtg/Ttg																																																																														
KDR	3791	MSKCC	GRCh37	4	55946143	55946143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	73	302	0	ENST00000263923.4:c.4036G>T	p.Asp1346Tyr	p.D1346Y	ENST00000263923	NM_002253.2	1346	Gac/Tac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956984	2956984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	221	536	0	ENST00000396946.4:c.2643C>A	p.Ser881Arg	p.S881R	ENST00000396946	NM_032415.4	881	agC/agA																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967086	18967086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	182	775	0	ENST00000262803.5:c.1801A>G	p.Thr601Ala	p.T601A	ENST00000262803	NM_002911.3	601	Acc/Gcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	113	642	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	181	921	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643299	38643299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1404721092		P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	49	483	0	ENST00000299084.4:c.769C>T	p.Arg257Cys	p.R257C	ENST00000299084	NM_152594.2	257	Cgc/Tgc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165728	118165728	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	67	466	0	ENST00000369448.3:c.238T>G	p.Leu80Val	p.L80V	ENST00000369448	NM_017709.3	80	Ttg/Gtg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372419	118372419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	72	575	0	ENST00000534358.1:c.6352G>A	p.Glu2118Lys	p.E2118K	ENST00000534358	NM_005933.3	2118	Gaa/Aaa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607771	46607771	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375135104		P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	94	953	1	ENST00000263734.3:c.1960G>A	p.Val654Ile	p.V654I	ENST00000263734	NM_001430.4	654	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112175429	112175430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCCACTCATGTTTAGCAG			P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	29	303	0	ENST00000257430.4:c.4139_4157dup	p.Arg1386SerfsTer6	p.R1386Sfs*6	ENST00000257430	NM_000038.5	1380	acc/aCCCCACTCATGTTTAGCAGcc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492934	56492953	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CTCATGCTACCAGCTGCAGC	CTCATGCTACCAGCTGCAGC	GCT			P-0044956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	18	230	1	ENST00000407977.2:c.-15_5delinsAGC		p.*5*	ENST00000407977																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	272	334	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347494	89347494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	119	549	0	ENST00000301030.4:c.5456C>G	p.Ser1819Cys	p.S1819C	ENST00000301030	NM_001256183.1	1819	tCc/tGc																																																																														
RAD51	5888	MSKCC	GRCh37	15	41022160	41022160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	88	477	0	ENST00000267868.3:c.884C>A	p.Ala295Glu	p.A295E	ENST00000267868	NM_002875.4	295	gCa/gAa																																																																														
INSR	3643	MSKCC	GRCh37	19	7122748	7122748	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	148	640	0	ENST00000302850.5:c.3406A>G	p.Met1136Val	p.M1136V	ENST00000302850	NM_000208.2	1136	Atg/Gtg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488717	212488717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	98	409	0	ENST00000342788.4:c.2132G>T	p.Arg711Leu	p.R711L	ENST00000342788	NM_005235.2	711	cGt/cTt																																																																														
ERG	2078	MSKCC	GRCh37	21	39755513	39755513	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1203601203		P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	74	453	0	ENST00000288319.7:c.1252A>G	p.Met418Val	p.M418V	ENST00000288319	NM_182918.3	418	Atg/Gtg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540110	187540110	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	60	315	0	ENST00000441802.2:c.7630G>C	p.Glu2544Gln	p.E2544Q	ENST00000441802	NM_005245.3	2544	Gag/Cag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0044988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	79	476	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0044988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	79	476	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0044988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	79	476	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537981	212537981	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs535202189		P-0046036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	69	328	0	ENST00000342788.4:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000342788	NM_005235.2	542	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55955863	55955863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868047715		P-0046036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	88	334	0	ENST00000263923.4:c.3299C>T	p.Ser1100Phe	p.S1100F	ENST00000263923	NM_002253.2	1100	tCc/tTc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370789	55370789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	61	357	0	ENST00000297316.4:c.91C>A	p.Pro31Thr	p.P31T	ENST00000297316	NM_022454.3	31	Ccc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0046036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	77	196	0				ENST00000310581	NM_198253.2																																																																																
FAM58A	0	MSKCC	GRCh37	X	152864448	152864448	+	synonymous_variant	Silent	SNP	G	G	A			P-0046036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	53	34	1	ENST00000406277.2:c.78C>T	p.Phe26=	p.F26=	ENST00000406277	NM_152274.4	26	ttC/ttT																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256529	+	missense_variant	Missense_Mutation	DNP	TT	TT	CA	rs1057519695		P-0046036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	184	540	1	ENST00000369535.4:c.182_183delinsTG	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAA/cTG																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117690317	117690317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	161	401	0	ENST00000369458.3:c.812C>A	p.Ala271Glu	p.A271E	ENST00000369458	NM_024626.3	271	gCa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578374	212578374	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	74	231	0	ENST00000342788.4:c.884-1G>A		p.X295_splice	ENST00000342788	NM_005235.2	295																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46271126	46271126	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0046036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	104	348	0	ENST00000371998.3:c.3250C>T	p.Gln1084Ter	p.Q1084*	ENST00000371998		1084	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877820	151877823	+	frameshift_variant	Frame_Shift_Del	DEL	TTGG	TTGG	-			P-0046036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	100	285	0	ENST00000262189.6:c.7122_7125del	p.Ala2376IlefsTer5	p.A2376Ifs*5	ENST00000262189	NM_170606.2	2374	gcCCAA/gc																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551541	150551541	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs755770114		P-0049880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	134	819	0	ENST00000369026.2:c.466A>G	p.Thr156Ala	p.T156A	ENST00000369026	NM_021960.4	156	Acg/Gcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0000416-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			655	55	632	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-	rs1354931921		P-0000416-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			54	28	3	0	ENST00000374994.4:c.70_78del	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
MET	4233	MSKCC	GRCh37	7	116411928	116411928	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000416-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	25	350	0	ENST00000397752.3:c.2913C>A	p.Tyr971Ter	p.Y971*	ENST00000397752	NM_000245.2	971	taC/taA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627729	187627729	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758545401		P-0000840-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	96	380	0	ENST00000441802.2:c.3253G>A	p.Gly1085Ser	p.G1085S	ENST00000441802	NM_005245.3	1085	Ggt/Agt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2127712	2127712	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000840-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	72	212	0	ENST00000219476.3:c.2951A>T	p.Glu984Val	p.E984V	ENST00000219476	NM_000548.3	984	gAa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	123	378	0	ENST00000269305.4:c.949del	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	317	Cag/ag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46233146	46233146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	174	365	0	ENST00000334344.6:c.1365G>C	p.Gln455His	p.Q455H	ENST00000334344	NM_152641.2	455	caG/caC																																																																														
MDM2	4193	MSKCC	GRCh37	12	69218393	69218393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			729	176	489	0	ENST00000462284.1:c.485C>G	p.Pro162Arg	p.P162R	ENST00000462284	NM_002392.5	162	cCa/cGa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244391	41244391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			703	147	479	0	ENST00000357654.3:c.3157G>A	p.Glu1053Lys	p.E1053K	ENST00000357654	NM_007294.3	1053	Gaa/Aaa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367818	15367818	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1385204010		P-0001683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	28	342	0	ENST00000263377.2:c.1508C>G	p.Ser503Cys	p.S503C	ENST00000263377	NM_058243.2	503	tCt/tGt																																																																														
TP63	8626	MSKCC	GRCh37	3	189526239	189526239	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002233-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			41	427	396	0	ENST00000264731.3:c.503A>G	p.Asn168Ser	p.N168S	ENST00000264731	NM_003722.4	168	aAc/aGc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287185	33287185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002233-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			52	474	475	0	ENST00000374542.5:c.1912C>T	p.Gln638Ter	p.Q638*	ENST00000374542	NM_001141970.1	638	Caa/Taa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134987	41134987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002233-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			23	258	240	0	ENST00000379561.5:c.641G>T	p.Arg214Leu	p.R214L	ENST00000379561	NM_002015.3	214	cGt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	56	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs267605076		P-0003412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	56	375	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	161	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	136	511	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089777	27089777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	40	156	0	ENST00000324856.7:c.2732+1G>T		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128030508	128030508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	181	676	1	ENST00000285398.2:c.1760G>T	p.Gly587Val	p.G587V	ENST00000285398	NM_000122.1	587	gGg/gTg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729974	30729974	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs397516840		P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	151	336	0	ENST00000359013.4:c.1570G>T	p.Glu524Ter	p.E524*	ENST00000359013	NM_001024847.2	524	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112174366	112174366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	145	381	0	ENST00000257430.4:c.3075A>G	p.Ile1025Met	p.I1025M	ENST00000257430	NM_000038.5	1025	atA/atG																																																																														
HGF	3082	MSKCC	GRCh37	7	81372753	81372753	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	151	521	0	ENST00000222390.5:c.781C>A	p.Arg261Ser	p.R261S	ENST00000222390	NM_000601.4	261	Cgc/Agc																																																																														
NF1	4763	MSKCC	GRCh37	17	29553649	29553649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	295	483	0	ENST00000358273.4:c.2198C>T	p.Pro733Leu	p.P733L	ENST00000358273	NM_001042492.2	733	cCc/cTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123701	11123701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	161	540	0	ENST00000344626.4:c.2351G>T	p.Gly784Val	p.G784V	ENST00000344626	NM_003072.3	784	gGg/gTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41525905	41525905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	159	445	3	ENST00000263253.7:c.1180G>T	p.Ala394Ser	p.A394S	ENST00000263253	NM_001429.3	394	Gca/Tca																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032560	47032560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	174	695	0	ENST00000329236.7:c.235G>A	p.Ala79Thr	p.A79T	ENST00000329236	NM_001204466.1	79	Gca/Aca																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044892	47044892	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	210	732	1	ENST00000329236.7:c.1984G>T	p.Glu662Ter	p.E662*	ENST00000329236	NM_001204466.1	662	Gag/Tag																																																																														
ARAF	369	MSKCC	GRCh37	X	47422704	47422704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	206	708	0	ENST00000377045.4:c.176G>T	p.Cys59Phe	p.C59F	ENST00000377045	NM_001654.4	59	tGt/tTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76890099	76890099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	210	687	0	ENST00000373344.5:c.4795G>A	p.Gly1599Ser	p.G1599S	ENST00000373344	NM_000489.3	1599	Ggt/Agt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0005467-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			75	291	363	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675071	40675071	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005467-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	205	707	0	ENST00000249776.8:c.35T>G	p.Val12Gly	p.V12G	ENST00000249776	NM_033286.3	12	gTt/gGt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64128970	64128972	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0005467-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	141	558	0	ENST00000334205.4:c.601_603del	p.Ile201del	p.I201del	ENST00000334205	NM_003942.2	200	acCATc/acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			120	370	166	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			138	48	340	0	ENST00000278616.4:c.8631G>C	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttC																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			111	547	423	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9525099	9525099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	113	339	0	ENST00000353224.5:c.1786G>C	p.Glu596Gln	p.E596Q	ENST00000353224	NM_177990.2	596	Gag/Cag																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900206	101900206	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs727503470		P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			56	119	315	0	ENST00000374994.4:c.640G>T	p.Gly214Cys	p.G214C	ENST00000374994	NM_004612.2	214	Ggt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057826	27057826	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			126	386	631	1	ENST00000324856.7:c.1534C>T	p.Gln512Ter	p.Q512*	ENST00000324856	NM_006015.4	512	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108199803	108199803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			96	73	219	0	ENST00000278616.4:c.7145G>T	p.Gly2382Val	p.G2382V	ENST00000278616	NM_000051.3	2382	gGa/gTa																																																																														
ATM	472	MSKCC	GRCh37	11	108199922	108199922	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1163371592		P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			66	50	172	0	ENST00000278616.4:c.7264G>A	p.Glu2422Lys	p.E2422K	ENST00000278616	NM_000051.3	2422	Gag/Aag																																																																														
ATM	472	MSKCC	GRCh37	11	108201074	108201074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			123	116	385	0	ENST00000278616.4:c.7441G>A	p.Asp2481Asn	p.D2481N	ENST00000278616	NM_000051.3	2481	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108201142	108201142	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			120	95	330	0	ENST00000278616.4:c.7509G>C	p.Met2503Ile	p.M2503I	ENST00000278616	NM_000051.3	2503	atG/atC																																																																														
ATM	472	MSKCC	GRCh37	11	108202172	108202172	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			69	59	277	0	ENST00000278616.4:c.7517G>A	p.Arg2506Lys	p.R2506K	ENST00000278616	NM_000051.3	2506	aGa/aAa																																																																														
ATM	472	MSKCC	GRCh37	11	108202232	108202232	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659323		P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			79	80	410	0	ENST00000278616.4:c.7577G>A	p.Arg2526Lys	p.R2526K	ENST00000278616	NM_000051.3	2526	aGa/aAa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2110704	2110704	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			143	282	472	0	ENST00000219476.3:c.1009G>C	p.Glu337Gln	p.E337Q	ENST00000219476	NM_000548.3	337	Gag/Cag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2110736	2110736	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			130	284	484	0	ENST00000219476.3:c.1041G>C	p.Lys347Asn	p.K347N	ENST00000219476	NM_000548.3	347	aaG/aaC																																																																														
AKT2	208	MSKCC	GRCh37	19	40747957	40747957	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	122	416	0	ENST00000392038.2:c.461A>G	p.Tyr154Cys	p.Y154C	ENST00000392038	NM_001626.4	154	tAt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295001	1295001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	43	31	0	ENST00000310581.5:c.104G>T	p.Gly35Val	p.G35V	ENST00000310581	NM_198253.2	35	gGc/gTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149433643	149433643	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	113	409	0	ENST00000286301.3:c.2908C>T	p.Gln970Ter	p.Q970*	ENST00000286301	NM_005211.3	970	Cag/Tag																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540213	23540213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			120	95	206	0	ENST00000380871.4:c.190G>A	p.Gly64Arg	p.G64R	ENST00000380871	NM_006167.3	64	Gga/Aga																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797300	135797300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs118203401		P-0005916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			66	218	204	0	ENST00000298552.3:c.569del	p.Arg190ProfsTer20	p.R190Pfs*20	ENST00000298552	NM_001162426.1	190	cGc/cc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006280-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	183	850	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082299	16082299	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs958489598		P-0006280-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			995	129	1014	1	ENST00000281043.3:c.113G>A	p.Gly38Asp	p.G38D	ENST00000281043	NM_005378.4	38	gGc/gAc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793305	242793305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006280-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	130	1134	1	ENST00000334409.5:c.772G>A	p.Gly258Ser	p.G258S	ENST00000334409	NM_005018.2	258	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577551	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0006280-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	80	716	1	ENST00000269305.4:c.730_731delinsTT	p.Gly244Phe	p.G244F	ENST00000269305	NM_001126112.2	244	GGc/TTc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090083	37090083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	173	314	0	ENST00000231790.2:c.1972C>G	p.Leu658Val	p.L658V	ENST00000231790	NM_000249.3	658	Ctt/Gtt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936069	49936069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	222	393	0	ENST00000296474.3:c.1601G>A	p.Gly534Glu	p.G534E	ENST00000296474	NM_002447.2	534	gGg/gAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0007092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	185	426	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0007092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	699	499	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	216	311	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0007092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	94	258	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298126	15298126	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201118034		P-0007092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	373	393	1	ENST00000263388.2:c.1630C>T	p.Arg544Cys	p.R544C	ENST00000263388	NM_000435.2	544	Cgc/Tgc																																																																														
ERG	2078	MSKCC	GRCh37	21	39775464	39775464	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1384526747		P-0007092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	479	358	1	ENST00000288319.7:c.556G>A	p.Asp186Asn	p.D186N	ENST00000288319	NM_182918.3	186	Gac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0010333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	487	264	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884464	151884464	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	82	474	0	ENST00000262189.6:c.4891A>T	p.Asn1631Tyr	p.N1631Y	ENST00000262189	NM_170606.2	1631	Aat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	63	208	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	43	127	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0010363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	73	243	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0010363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	65	229	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982141	93982141	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0010363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	89	294	0	ENST00000369303.4:c.1325-1G>T		p.X442_splice	ENST00000369303	NM_004440.3	442																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119823	70119823	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	99	302	0	ENST00000245479.2:c.825del	p.Ile275MetfsTer4	p.I275Mfs*4	ENST00000245479	NM_000346.3	275	atC/at																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	2314	550	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0012251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	220	513	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197791	66197791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	96	728	0	ENST00000273854.3:c.2908G>A	p.Val970Ile	p.V970I	ENST00000273854	NM_004439.5	970	Gta/Ata																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519934		P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	180	453	0	ENST00000263967.3:c.333G>C	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaC																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40456400	40456400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	130	615	0	ENST00000345506.4:c.1210G>C	p.Glu404Gln	p.E404Q	ENST00000345506	NM_003152.3	404	Gag/Cag																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78519452	78519452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	129	601	0	ENST00000306801.3:c.23C>T	p.Ser8Leu	p.S8L	ENST00000306801	NM_020761.2	8	tCg/tTg																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881512	111881530	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGCCCCACCTGCCAGCC	CTGGCCCCACCTGCCAGCC	-			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	81	495	0	ENST00000393256.3:c.197_215del	p.Pro66LeufsTer12	p.P66Lfs*12	ENST00000393256	NM_006538.4	64	CTGGCCCCACCTGCCAGCCct/ct																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265052	198265052	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	104	381	0	ENST00000335508.6:c.2825A>G	p.Asn942Ser	p.N942S	ENST00000335508	NM_012433.2	942	aAc/aGc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39708783	39708783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	101	414	0	ENST00000361337.2:c.394G>T	p.Asp132Tyr	p.D132Y	ENST00000361337	NM_003286.2	132	Gat/Tat																																																																														
AR	367	MSKCC	GRCh37	X	66863103	66863103	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	140	260	0	ENST00000374690.3:c.1622A>T	p.Glu541Val	p.E541V	ENST00000374690	NM_000044.3	541	gAg/gTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242470	+	missense_variant	Missense_Mutation	ONP	GGAATT	GGAATT	AATTCC			P-0014932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	804	677	0	ENST00000275493.2:c.2235_2240inv	p.Glu746_Leu747delinsIlePro	p.E746_L747delinsIP	ENST00000275493	NM_005228.3	745	aaGGAATTa/aaAATTCCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1416	103	707	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465558	8465558	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1400992051		P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	12	733	0	ENST00000356435.5:c.3622G>A	p.Asp1208Asn	p.D1208N	ENST00000356435		1208	Gac/Aac																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576257	88576257	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	43	340	0	ENST00000360948.2:c.1416T>A	p.Ser472Arg	p.S472R	ENST00000360948	NM_001012338.2	472	agT/agA																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662352	67662352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	89	588	0	ENST00000264010.4:c.1598G>C	p.Arg533Pro	p.R533P	ENST00000264010	NM_006565.3	533	cGc/cCc																																																																														
NF1	4763	MSKCC	GRCh37	17	29677331	29677332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			329	58	400	0	ENST00000358273.4:c.7453dup	p.Tyr2485LeufsTer2	p.Y2485Lfs*2	ENST00000358273	NM_001042492.2	2484	-/T																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085729	16085729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1263	67	727	0	ENST00000281043.3:c.905G>T	p.Arg302Leu	p.R302L	ENST00000281043	NM_005378.4	302	cGt/cTt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61717882	61717883	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	63	696	1	ENST00000401558.2:c.1916_1917delinsTT	p.Tyr639Phe	p.Y639F	ENST00000401558	NM_003400.3	639	tAC/tTT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525724	187525724	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	47	314	0	ENST00000441802.2:c.10355A>C	p.Asn3452Thr	p.N3452T	ENST00000441802	NM_005245.3	3452	aAt/aCt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86686619	86686619	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			194	20	497	0	ENST00000274376.6:c.3063C>G	p.His1021Gln	p.H1021Q	ENST00000274376	NM_002890.2	1021	caC/caG																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128347866	128347866	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			898	55	631	0	ENST00000265960.3:c.639G>C	p.Gln213His	p.Q213H	ENST00000265960	NM_001006617.1	213	caG/caC																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932465	39932465	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	65	712	0	ENST00000378444.4:c.2134G>T	p.Glu712Ter	p.E712*	ENST00000378444	NM_001123385.1	712	Gag/Tag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	256	522	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587782082		P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	287	749	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602617	10602617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	271	639	0	ENST00000171111.5:c.961G>C	p.Ala321Pro	p.A321P	ENST00000171111	NM_203500.1	321	Gcg/Ccg																																																																														
MAX	4149	MSKCC	GRCh37	14	65543210	65543210	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876659544		P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	31	319	0	ENST00000358664.4:c.467G>A	p.Arg156Gln	p.R156Q	ENST00000358664	NM_002382.4	156	cGg/cAg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876461	35876461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1426	237	872	0	ENST00000303115.3:c.1253C>T	p.Pro418Leu	p.P418L	ENST00000303115	NM_002185.3	418	cCa/cTa																																																																														
JUN	3725	MSKCC	GRCh37	1	59248409	59248409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184098204		P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	28	408	2	ENST00000371222.2:c.334G>A	p.Glu112Lys	p.E112K	ENST00000371222	NM_002228.3	112	Gag/Aag																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056591	26056591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	84	283	0	ENST00000343677.2:c.66G>C	p.Lys22Asn	p.K22N	ENST00000343677	NM_005319.3	22	aaG/aaC																																																																														
PGR	5241	MSKCC	GRCh37	11	100999201	100999201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	54	769	0	ENST00000325455.5:c.601G>C	p.Glu201Gln	p.E201Q	ENST00000325455	NM_001202474.3	201	Gag/Cag																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609780	28609780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	290	742	1	ENST00000241453.7:c.1449G>T	p.Trp483Cys	p.W483C	ENST00000241453	NM_004119.2	483	tgG/tgT																																																																														
BLM	641	MSKCC	GRCh37	15	91303747	91304239	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAACTACAGATTTGCTTTTGTGGCCTACCAGAGTAAACTACTTATATTTAATACGTTGTTCTCTTTTCTCTCTTCAGAAGGAAACTTCTAACGGAAGTAGATTTTAATAAAAGTGATGCCAGTCTTCTTGGCTCATTGTGGAGATACAGGCCTGATTCACTTGATGGCCCTATGGAGGGTGATTCCTGCCCTACAGGGAATTCTATGAAGGAGTTAAATTTTTCACACCTTCCCTCAAATTCTGTTTCTCCTGGGGACTGTTTACTGACTACCACCCTAGGAAAGACAGGATTCTCTGCCACCAGGAAGAATCTTTTTGAAAGGCCTTTATTCAATACCCATTTACAGAAGTCCTTTGTAAGTAGCAACTGGGCTGAAACACCAAGACTAGGAAAAAAAAATGAAAGCTCTTATTTCCCAGGAAATGTTCTCACAAGCACTGCTGTGAAAGATCAGAATAAACATACTGCTTCAATAAATGACTTAGAAAGAG	AAACTACAGATTTGCTTTTGTGGCCTACCAGAGTAAACTACTTATATTTAATACGTTGTTCTCTTTTCTCTCTTCAGAAGGAAACTTCTAACGGAAGTAGATTTTAATAAAAGTGATGCCAGTCTTCTTGGCTCATTGTGGAGATACAGGCCTGATTCACTTGATGGCCCTATGGAGGGTGATTCCTGCCCTACAGGGAATTCTATGAAGGAGTTAAATTTTTCACACCTTCCCTCAAATTCTGTTTCTCCTGGGGACTGTTTACTGACTACCACCCTAGGAAAGACAGGATTCTCTGCCACCAGGAAGAATCTTTTTGAAAGGCCTTTATTCAATACCCATTTACAGAAGTCCTTTGTAAGTAGCAACTGGGCTGAAACACCAAGACTAGGAAAAAAAAATGAAAGCTCTTATTTCCCAGGAAATGTTCTCACAAGCACTGCTGTGAAAGATCAGAATAAACATACTGCTTCAATAAATGACTTAGAAAGAG	-			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	72	121	0	ENST00000355112.3:c.1221-73_1640del		p.X407_splice	ENST00000355112	NM_000057.2	407																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351727	89351727	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	170	885	0	ENST00000301030.4:c.1223C>G	p.Ser408Ter	p.S408*	ENST00000301030	NM_001256183.1	408	tCa/tGa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223769	36223769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1618	86	884	0	ENST00000222270.7:c.6319G>A	p.Glu2107Lys	p.E2107K	ENST00000222270	NM_014727.1	2107	Gag/Aag																																																																														
CIC	23152	MSKCC	GRCh37	19	42794670	42794670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	82	707	0	ENST00000575354.2:c.1750C>A	p.Pro584Thr	p.P584T	ENST00000575354	NM_015125.3	584	Cct/Act																																																																														
ALK	238	MSKCC	GRCh37	2	29606700	29606700	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775514690		P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	203	735	1	ENST00000389048.3:c.1180G>A	p.Gly394Arg	p.G394R	ENST00000389048	NM_004304.4	394	Ggg/Agg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61710172	61710172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	180	722	0	ENST00000401558.2:c.2732C>G	p.Ala911Gly	p.A911G	ENST00000401558	NM_003400.3	911	gCt/gGt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095541	178095541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	68	554	0	ENST00000397062.3:c.1790G>C	p.Ser597Thr	p.S597T	ENST00000397062	NM_006164.4	597	aGt/aCt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483931	212483931	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs182073178		P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	87	883	1	ENST00000342788.4:c.2272G>T	p.Gly758Cys	p.G758C	ENST00000342788	NM_005235.2	758	Ggt/Tgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158117	47158117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	63	828	0	ENST00000409792.3:c.4582G>A	p.Glu1528Lys	p.E1528K	ENST00000409792	NM_014159.6	1528	Gaa/Aaa																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045777	26045777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	152	402	2	ENST00000540144.1:c.139G>A	p.Val47Met	p.V47M	ENST00000540144	NM_003531.2	47	Gtg/Atg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056570	26056571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAG			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	104	323	0	ENST00000343677.2:c.83_86dup	p.Gly30TrpfsTer6	p.G30Wfs*6	ENST00000343677	NM_005319.3	29	ggg/ggCTGGg																																																																														
NBN	4683	MSKCC	GRCh37	8	90967617	90967617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	51	554	0	ENST00000265433.3:c.1291C>T	p.Leu431Phe	p.L431F	ENST00000265433	NM_002485.4	431	Ctt/Ttt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492907	8492907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	222	691	1	ENST00000356435.5:c.2422G>A	p.Asp808Asn	p.D808N	ENST00000356435		808	Gat/Aat																																																																														
ARAF	369	MSKCC	GRCh37	X	47428194	47428194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	113	813	0	ENST00000377045.4:c.1154del	p.Cys385LeufsTer59	p.C385Lfs*59	ENST00000377045	NM_001654.4	385	tGt/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0018300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	134	776	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143350346	143350346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1483862322		P-0018300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	20	287	0	ENST00000262992.4:c.116C>T	p.Pro39Leu	p.P39L	ENST00000262992	NM_001101669.1	39	cCg/cTg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287568	33287568	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	83	563	0	ENST00000374542.5:c.1529C>G	p.Pro510Arg	p.P510R	ENST00000374542	NM_001141970.1	510	cCt/cGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151841842	151841842	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	64	331	0	ENST00000262189.6:c.14299del	p.Thr4767LeufsTer43	p.T4767Lfs*43	ENST00000262189	NM_170606.2	4767	Act/ct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0018916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	50	542	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0018916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	119	594	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0019070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	197	827	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
KDR	3791	MSKCC	GRCh37	4	55956183	55956183	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	234	854	0	ENST00000263923.4:c.3132C>G	p.Ile1044Met	p.I1044M	ENST00000263923	NM_002253.2	1044	atC/atG																																																																														
TET2	54790	MSKCC	GRCh37	4	106197257	106197257	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	52	374	0	ENST00000380013.4:c.5590G>C	p.Val1864Leu	p.V1864L	ENST00000380013	NM_001127208.2	1864	Gtg/Ctg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0019303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	131	467	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	286	630	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604749	48604749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	127	470	0	ENST00000342988.3:c.1571G>A	p.Trp524Ter	p.W524*	ENST00000342988	NM_005359.5	524	tGg/tAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120497	94120497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	57	404	0	ENST00000369303.4:c.554C>T	p.Ala185Val	p.A185V	ENST00000369303	NM_004440.3	185	gCc/gTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29587520	29587520	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	41	416	0	ENST00000358273.4:c.4564C>G	p.Leu1522Val	p.L1522V	ENST00000358273	NM_001042492.2	1522	Ctt/Gtt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442569	52442569	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1298276806		P-0020619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	22	696	1	ENST00000460680.1:c.176G>A	p.Arg59Gln	p.R59Q	ENST00000460680	NM_004656.3	59	cGg/cAg																																																																														
CDH1	999	MSKCC	GRCh37	16	68835794	68835794	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0020619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	25	728	0	ENST00000261769.5:c.385C>T	p.Gln129Ter	p.Q129*	ENST00000261769	NM_004360.3	129	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49449082	49449082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	26	898	0	ENST00000301067.7:c.26A>G	p.Glu9Gly	p.E9G	ENST00000301067	NM_003482.3	9	gAg/gGg																																																																														
MGA	23269	MSKCC	GRCh37	15	42032250	42032250	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	19	835	1	ENST00000219905.7:c.4435-1G>A		p.X1479_splice	ENST00000219905	NM_001164273.1	1479																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43713236	43713236	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	13	1071	0	ENST00000382044.4:c.4237A>G	p.Thr1413Ala	p.T1413A	ENST00000382044	NM_001141980.1	1413	Acc/Gcc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0021839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	284	743	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0021839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	15	752	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571891	64571891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	88	1041	0	ENST00000337652.1:c.1763C>T	p.Ser588Leu	p.S588L	ENST00000337652	NM_130803.2	588	tCg/tTg																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47604179	47604183	+	frameshift_variant	Frame_Shift_Del	DEL	GTTAT	GTTAT	C			P-0021839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	127	646	0	ENST00000263735.4:c.518_522delinsC	p.Arg173ProfsTer36	p.R173Pfs*36	ENST00000263735	NM_002354.2	173	cGTTAT/cC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	549	769	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0023456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	385	797	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044550	47044550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	149	458	0	ENST00000329236.7:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000329236	NM_001204466.1	605	Gag/Tag																																																																														
STK40	83931	MSKCC	GRCh37	1	36820846	36820846	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs770651057		P-0023456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	349	683	2	ENST00000373129.3:c.531C>G	p.Ile177Met	p.I177M	ENST00000373129	NM_032017.1	177	atC/atG																																																																														
BIRC3	330	MSKCC	GRCh37	11	102207775	102207775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	326	612	0	ENST00000263464.3:c.1757G>C	p.Arg586Thr	p.R586T	ENST00000263464	NM_001165.4	586	aGa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	176	872	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493708	56493709	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTAGAC	rs755187499		P-0023702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	134	726	0	ENST00000267101.3:c.3037_3042dup	p.Asp1014_Leu1015dup	p.D1014_L1015dup	ENST00000267101	NM_001982.3	1014	-/CTAGAC																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733184	74733184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1469	228	824	0	ENST00000359995.5:c.59A>G	p.Asn20Ser	p.N20S	ENST00000359995	NM_001195427.1	20	aAc/aGc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39623731	39623731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	29	708	0	ENST00000262039.4:c.2138G>A	p.Gly713Glu	p.G713E	ENST00000262039	NM_002647.2	713	gGg/gAg																																																																														
RRAS	6237	MSKCC	GRCh37	19	50143354	50143355	+	start_lost	Translation_Start_Site	DNP	AT	AT	GA			P-0023702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	45	46	0	ENST00000246792.3:c.1_2delinsTC	p.Met1?	p.M1?	ENST00000246792	NM_006270.3	1	ATg/TCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	155	694	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	178	603	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	142	337	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	142	337	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	142	337	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563132	21563132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	174	452	0	ENST00000382592.4:c.787G>A	p.Glu263Lys	p.E263K	ENST00000382592	NM_014572.2	263	Gaa/Aaa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31385104	31385104	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs757998715		P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	136	555	0	ENST00000328111.2:c.1489C>T	p.Arg497Trp	p.R497W	ENST00000328111	NM_006892.3	497	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864302	151864302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	204	579	0	ENST00000262189.6:c.9679C>T	p.Pro3227Ser	p.P3227S	ENST00000262189	NM_170606.2	3227	Cca/Tca																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55153709	55153709	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	61	474	0	ENST00000257290.5:c.2674+1G>T		p.X892_splice	ENST00000257290	NM_006206.4	892																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	35	726	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	186	441	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	318	485	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	12	360	0	ENST00000358273.4:c.1882del	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	42	319	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	120	547	4	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589610	67589612	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	94	402	0	ENST00000274335.5:c.1376_1378del	p.Lys459del	p.K459del	ENST00000274335		458	gAAAaa/gaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	87	511	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	160	721	3	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	40	498	4	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	28	447	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	55	384	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332109	70332109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777837034		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	53	193	1	ENST00000373644.4:c.14G>A	p.Arg5His	p.R5H	ENST00000373644	NM_030625.2	5	cGc/cAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180055897	180055897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	35	539	2	ENST00000261937.6:c.1088del	p.Pro363ArgfsTer27	p.P363Rfs*27	ENST00000261937	NM_182925.4	363	cCg/cg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	210	797	3	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527697	157527697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745372243		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	209	658	0	ENST00000346085.5:c.5422C>T	p.Arg1808Cys	p.R1808C	ENST00000346085	NM_020732.3	1808	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	172	642	1	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	312	997	2	ENST00000575354.2:c.1526del	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	129	441	2	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	225	782	2	ENST00000575354.2:c.3743del	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460476	149460476	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	54	784	0	ENST00000286301.3:c.161del	p.Pro54HisfsTer58	p.P54Hfs*58	ENST00000286301	NM_005211.3	54	cCa/ca																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699374	47699374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	42	591	1	ENST00000347630.2:c.134G>T	p.Arg45Leu	p.R45L	ENST00000347630	NM_001007230.1	45	cGg/cTg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178258	56178258	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	63	397	0	ENST00000399503.3:c.3236del	p.Asn1079IlefsTer3	p.N1079Ifs*3	ENST00000399503	NM_005921.1	1077	tcA/tc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216380	7216380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	212	689	2	ENST00000380728.2:c.868del	p.Gln290SerfsTer55	p.Q290Sfs*55	ENST00000380728		290	Cag/ag																																																																														
APC	324	MSKCC	GRCh37	5	112174643	112174643	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs140493115		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	21	462	0	ENST00000257430.4:c.3352A>G	p.Asn1118Asp	p.N1118D	ENST00000257430	NM_000038.5	1118	Aat/Gat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779703	3779703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	75	696	1	ENST00000262367.5:c.5345C>T	p.Ala1782Val	p.A1782V	ENST00000262367	NM_004380.2	1782	gCg/gTg																																																																														
PGR	5241	MSKCC	GRCh37	11	100962530	100962530	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752817186		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	179	700	0	ENST00000325455.5:c.1867C>T	p.Arg623Cys	p.R623C	ENST00000325455	NM_001202474.3	623	Cgc/Tgc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106534448	106534448	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	131	346	0	ENST00000369096.4:c.24del	p.Lys8AsnfsTer17	p.K8Nfs*17	ENST00000369096	NM_001198.3	7	gAa/ga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458435	120458436	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771237928		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	40	623	0	ENST00000256646.2:c.6909dup	p.Ile2304HisfsTer9	p.I2304Hfs*9	ENST00000256646	NM_024408.3	2303	-/C																																																																														
FH	2271	MSKCC	GRCh37	1	241667423	241667423	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913122		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	198	633	2	ENST00000366560.3:c.1027C>T	p.Arg343Ter	p.R343*	ENST00000366560	NM_000143.3	343	Cga/Tga																																																																														
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	76	698	1	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	271	933	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178673	56178675	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-	rs758576258		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	69	282	0	ENST00000399503.3:c.3651_3653del	p.Ile1219del	p.I1219del	ENST00000399503	NM_005921.1	1216	ATC/-																																																																														
MET	4233	MSKCC	GRCh37	7	116412563	116412563	+	intron_variant	Intron	DEL	A	A	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	207	1172	1	ENST00000397752.3:c.3028+526del		p.*1010*	ENST00000397752	NM_000245.2																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81927337	81927337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1164040767		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	56	750	1	ENST00000359376.3:c.1010G>A	p.Arg337Gln	p.R337Q	ENST00000359376	NM_002661.3	337	cGg/cAg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372259	55372264	+	inframe_deletion	In_Frame_Del	DEL	CACCAG	CACCAG	-	rs766232046		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	38	460	0	ENST00000297316.4:c.972_977del	p.Gln324_His325del	p.Q324_H325del	ENST00000297316	NM_022454.3	317	CACCAG/-																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865315	57865316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs747342182		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	223	862	0	ENST00000228682.2:c.2798dup	p.Ser934PhefsTer4	p.S934Ffs*4	ENST00000228682	NM_005269.2	931	ctg/ctGg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569793	95569793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	47	360	0	ENST00000343455.3:c.3940C>T	p.Arg1314Trp	p.R1314W	ENST00000343455	NM_177438.2	1314	Cgg/Tgg																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128307	30128307	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762464616		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	262	749	1	ENST00000263025.4:c.925C>T	p.Arg309Trp	p.R309W	ENST00000263025	NM_002746.2	309	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829486	72829487	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	68	698	0	ENST00000268489.5:c.7094dup	p.Asn2365LysfsTer2	p.N2365Kfs*2	ENST00000268489	NM_006885.3	2365	aat/aaAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866357	37866357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	229	694	0	ENST00000269571.5:c.662C>T	p.Ala221Val	p.A221V	ENST00000269571		221	gCc/gTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291077	10291077	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs748783652		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	265	721	0	ENST00000340748.4:c.394C>A	p.Leu132Ile	p.L132I	ENST00000340748		132	Ctt/Att																																																																														
ERF	2077	MSKCC	GRCh37	19	42754054	42754055	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	111	764	0	ENST00000222329.4:c.297dup	p.Lys100GlufsTer21	p.K100Efs*21	ENST00000222329	NM_006494.2	99	-/G																																																																														
ERF	2077	MSKCC	GRCh37	19	42754580	42754580	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	53	820	0	ENST00000222329.4:c.160del	p.Glu54AsnfsTer23	p.E54Nfs*23	ENST00000222329	NM_006494.2	54	Gaa/aa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158617544	158617544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	67	533	0	ENST00000263640.3:c.1112G>A	p.Gly371Glu	p.G371E	ENST00000263640	NM_001105.4	371	gGg/gAg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021425	31021425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	157	581	0	ENST00000375687.4:c.1424A>G	p.Asp475Gly	p.D475G	ENST00000375687	NM_015338.5	475	gAc/gGc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645765	12645765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	40	421	0	ENST00000251849.4:c.704C>A	p.Pro235His	p.P235H	ENST00000251849	NM_002880.3	235	cCt/cAt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37061800	37061801	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	168	553	0	ENST00000231790.2:c.887dup	p.Leu296PhefsTer11	p.L296Ffs*11	ENST00000231790	NM_000249.3	295	agt/agTt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55143627	55143627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	131	466	0	ENST00000257290.5:c.1859C>A	p.Pro620His	p.P620H	ENST00000257290	NM_006206.4	620	cCt/cAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106158107	106158107	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	93	385	0	ENST00000380013.4:c.3008G>A	p.Trp1003Ter	p.W1003*	ENST00000380013	NM_001127208.2	1003	tGg/tAg																																																																														
TET2	54790	MSKCC	GRCh37	4	106197418	106197418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	43	372	0	ENST00000380013.4:c.5751G>T	p.Trp1917Cys	p.W1917C	ENST00000380013	NM_001127208.2	1917	tgG/tgT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541630	187541630	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371538987		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	141	418	0	ENST00000441802.2:c.6110C>T	p.Thr2037Met	p.T2037M	ENST00000441802	NM_005245.3	2037	aCg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1293734	1293734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	53	877	0	ENST00000310581.5:c.1267G>A	p.Ala423Thr	p.A423T	ENST00000310581	NM_198253.2	423	Gcc/Acc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637615	176637615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	45	631	0	ENST00000439151.2:c.2215G>A	p.Val739Ile	p.V739I	ENST00000439151	NM_022455.4	739	Gtt/Att																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058751	180058751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	271	759	0	ENST00000261937.6:c.86C>A	p.Pro29His	p.P29H	ENST00000261937	NM_182925.4	29	cCc/cAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505503	157505503	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	47	444	0	ENST00000346085.5:c.3488del	p.Pro1163ArgfsTer48	p.P1163Rfs*48	ENST00000346085	NM_020732.3	1162	Ccc/cc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38314976	38314976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	69	915	0	ENST00000425967.3:c.88T>C	p.Cys30Arg	p.C30R	ENST00000425967	NM_001174067.1	30	Tgc/Cgc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371002	55371002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	217	586	0	ENST00000297316.4:c.304C>A	p.Leu102Met	p.L102M	ENST00000297316	NM_022454.3	102	Ctg/Atg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141567214	141567214	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	55	833	0	ENST00000220592.5:c.1000C>T	p.Gln334Ter	p.Q334*	ENST00000220592	NM_012154.3	334	Cag/Tag																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248058	110248058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755781036		P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	94	605	1	ENST00000374672.4:c.1414G>A	p.Ala472Thr	p.A472T	ENST00000374672	NM_004235.4	472	Gcc/Acc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200273	123200273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	36	620	0	ENST00000218089.9:c.2252G>A	p.Ser751Asn	p.S751N	ENST00000218089	NM_001042749.1	751	aGc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025714-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			500	72	410	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs863223300		P-0025714-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			266	59	494	0	ENST00000269305.4:c.532del	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																														
ALK	238	MSKCC	GRCh37	2	30143132	30143132	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1262491330		P-0025714-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			283	38	514	0	ENST00000389048.3:c.394G>T	p.Val132Leu	p.V132L	ENST00000389048	NM_004304.4	132	Gtg/Ttg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944167	71944167	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025714-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			331	55	451	1	ENST00000298229.2:c.2002del	p.Arg668GlyfsTer90	p.R668Gfs*90	ENST00000298229	NM_001567.3	667	tCc/tc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274696	198274696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025714-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			436	50	383	0	ENST00000335508.6:c.702G>T	p.Glu234Asp	p.E234D	ENST00000335508	NM_012433.2	234	gaG/gaT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89478261	89478261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025714-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			564	86	393	0	ENST00000336596.2:c.2080C>A	p.Pro694Thr	p.P694T	ENST00000336596	NM_005233.5	694	Cca/Aca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953054	2953055	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0025714-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			363	42	590	1	ENST00000396946.4:c.2885_2886delinsAT	p.Pro962His	p.P962H	ENST00000396946	NM_032415.4	962	cCC/cAT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959184	2959184	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025714-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			374	65	561	0	ENST00000396946.4:c.2332A>T	p.Ile778Phe	p.I778F	ENST00000396946	NM_032415.4	778	Atc/Ttc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	488	506	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0026022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	294	589	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873020	136873020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147198552		P-0026022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	47	331	1	ENST00000241393.3:c.478G>A	p.Val160Ile	p.V160I	ENST00000241393	NM_003467.2	160	Gtc/Atc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883184	37883186	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0026022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	59	595	0	ENST00000269571.5:c.3092_3094del	p.Phe1031del	p.F1031del	ENST00000269571		1029	ggCTTc/ggc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940366	49940366	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770141981		P-0026022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	80	567	0	ENST00000296474.3:c.677C>T	p.Ser226Leu	p.S226L	ENST00000296474	NM_002447.2	226	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026724-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	348	675	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404587	8404587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026724-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	161	373	0	ENST00000356435.5:c.4160C>T	p.Ala1387Val	p.A1387V	ENST00000356435		1387	gCg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097270	11097270	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026724-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	523	623	0	ENST00000344626.4:c.760+1G>A		p.X254_splice	ENST00000344626	NM_003072.3	254																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741574	17741574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1371486239		P-0026724-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	143	490	1	ENST00000250003.3:c.245G>A	p.Arg82His	p.R82H	ENST00000250003	NM_002478.4	82	cGc/cAc																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771536	112771536	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026724-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			493	147	557	0	ENST00000369452.4:c.1709A>C	p.Gln570Pro	p.Q570P	ENST00000369452	NM_007373.3	570	cAg/cCg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249832	39249832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026724-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	197	635	0	ENST00000402219.2:c.1737G>C	p.Glu579Asp	p.E579D	ENST00000402219	NM_005633.3	579	gaG/gaC																																																																														
PREX2	80243	MSKCC	GRCh37	8	68930086	68930086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026724-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			747	89	373	0	ENST00000288368.4:c.147C>A	p.Phe49Leu	p.F49L	ENST00000288368	NM_024870.2	49	ttC/ttA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	276	619	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	551	552	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	473	550	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CCND3	896	MSKCC	GRCh37	6	41908238	41908238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	198	661	1	ENST00000372991.4:c.284G>A	p.Arg95Gln	p.R95Q	ENST00000372991	NM_001760.3	95	cGa/cAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459558	50459558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	99	292	0	ENST00000331340.3:c.847C>A	p.Leu283Ile	p.L283I	ENST00000331340	NM_006060.4	283	Ctt/Att																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647436	3647436	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377148341		P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1376	168	547	0	ENST00000294008.3:c.1627G>A	p.Glu543Lys	p.E543K	ENST00000294008	NM_032444.2	543	Gag/Aag																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363282	40363282	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	160	462	0	ENST00000397332.2:c.947A>C	p.His316Pro	p.H316P	ENST00000397332	NM_001033082.2	316	cAc/cCc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574711	95574711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	109	424	0	ENST00000343455.3:c.2386G>C	p.Glu796Gln	p.E796Q	ENST00000343455	NM_177438.2	796	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0027257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	58	476	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346419	152346419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	29	341	0	ENST00000359321.1:c.151G>A	p.Gly51Arg	p.G51R	ENST00000359321	NM_005431.1	51	Gga/Aga																																																																														
NF1	4763	MSKCC	GRCh37	17	29554566	29554566	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	52	316	1	ENST00000358273.4:c.2351G>A	p.Trp784Ter	p.W784*	ENST00000358273	NM_001042492.2	784	tGg/tAg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1325346	1325346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	40	454	0	ENST00000381566.1:c.329G>T	p.Ser110Ile	p.S110I	ENST00000381566		110	aGt/aTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244997	46244997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs868082376		P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	301	575	1	ENST00000334344.6:c.3091C>T	p.Gln1031Ter	p.Q1031*	ENST00000334344	NM_152641.2	1031	Cag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68771344	68771344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	103	263	0	ENST00000261769.5:c.26C>T	p.Ser9Leu	p.S9L	ENST00000261769	NM_004360.3	9	tCg/tTg																																																																														
RET	5979	MSKCC	GRCh37	10	43609036	43609036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	179	567	0	ENST00000355710.3:c.1792G>A	p.Glu598Lys	p.E598K	ENST00000355710	NM_020975.4	598	Gag/Aag																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50479261	50479261	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	242	421	1	ENST00000394963.4:c.110del	p.Pro37LeufsTer33	p.P37Lfs*33	ENST00000394963	NM_003076.4	37	Cct/ct																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346307	89346307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1259405084		P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	150	352	0	ENST00000301030.4:c.6643G>A	p.Val2215Met	p.V2215M	ENST00000301030	NM_001256183.1	2215	Gtg/Atg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350309	89350309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	210	677	0	ENST00000301030.4:c.2641G>A	p.Val881Met	p.V881M	ENST00000301030	NM_001256183.1	881	Gtg/Atg																																																																														
NF1	4763	MSKCC	GRCh37	17	29556332	29556332	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	148	409	0	ENST00000358273.4:c.2699C>G	p.Ser900Cys	p.S900C	ENST00000358273	NM_001042492.2	900	tCc/tGc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56180553	56180553	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	152	367	0	ENST00000399503.3:c.3882G>C	p.Glu1294Asp	p.E1294D	ENST00000399503	NM_005921.1	1294	gaG/gaC																																																																														
MET	4233	MSKCC	GRCh37	7	116395555	116395555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	219	446	0	ENST00000397752.3:c.1848G>C	p.Glu616Asp	p.E616D	ENST00000397752	NM_000245.2	616	gaG/gaC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151896520	151896520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	186	263	0	ENST00000262189.6:c.4117C>G	p.Leu1373Val	p.L1373V	ENST00000262189	NM_170606.2	1373	Cta/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0028108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	415	633	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0028108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	126	278	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0028108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			717	339	422	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060500738		P-0028108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			123	288	312	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453987	140453987	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G	rs180177040		P-0028108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	111	216	0	ENST00000288602.6:c.1741A>C	p.Asn581His	p.N581H	ENST00000288602	NM_004333.4	581	Aat/Cat																																																																														
SESN3	143686	MSKCC	GRCh37	11	94922987	94922987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	204	507	1	ENST00000536441.1:c.481C>A	p.Leu161Met	p.L161M	ENST00000536441	NM_144665.3	161	Ctg/Atg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748584	40748584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			594	57	354	0	ENST00000373198.4:c.2932G>A	p.Ala978Thr	p.A978T	ENST00000373198	NM_133170.3	978	Gcg/Acg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620600	52620600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	406	513	0	ENST00000394830.3:c.3153G>A	p.Trp1051Ter	p.W1051*	ENST00000394830	NM_018313.4	1051	tgG/tgA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964505	93964505	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs770305987		P-0028108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	147	450	0	ENST00000369303.4:c.2392A>C	p.Ile798Leu	p.I798L	ENST00000369303	NM_004440.3	798	Att/Ctt																																																																														
ATRX	546	MSKCC	GRCh37	X	76939192	76939192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	250	285	0	ENST00000373344.5:c.1556C>T	p.Ser519Phe	p.S519F	ENST00000373344	NM_000489.3	519	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	34	465	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587782289		P-0028536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	58	569	0	ENST00000269305.4:c.706T>G	p.Tyr236Asp	p.Y236D	ENST00000269305	NM_001126112.2	236	Tac/Gac																																																																														
BTK	695	MSKCC	GRCh37	X	100609634	100609634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	44	462	0	ENST00000308731.7:c.1615G>A	p.Asp539Asn	p.D539N	ENST00000308731	NM_000061.2	539	Gat/Aat																																																																														
NF1	4763	MSKCC	GRCh37	17	29560115	29560115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	33	379	0	ENST00000358273.4:c.3592G>A	p.Glu1198Lys	p.E1198K	ENST00000358273	NM_001042492.2	1198	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0028917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	710	741	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2120572	2120572	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934872		P-0028917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	229	799	1	ENST00000219476.3:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000219476	NM_000548.3	611	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029203-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			330	39	664	1	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579346	7579346	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029203-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			318	67	678	0	ENST00000269305.4:c.341T>A	p.Leu114Ter	p.L114*	ENST00000269305	NM_001126112.2	114	tTg/tAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440542	49440542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773033619		P-0029203-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			435	33	806	0	ENST00000301067.7:c.4268G>A	p.Arg1423His	p.R1423H	ENST00000301067	NM_003482.3	1423	cGt/cAt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349935	15349935	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029203-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			316	30	691	0	ENST00000263377.2:c.3717G>C	p.Lys1239Asn	p.K1239N	ENST00000263377	NM_058243.2	1239	aaG/aaC																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982382	25982382	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029203-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			285	21	307	0	ENST00000435504.4:c.908T>G	p.Leu303Arg	p.L303R	ENST00000435504		303	cTg/cGg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098958	178098963	+	inframe_deletion	In_Frame_Del	DEL	ATCTAT	ATCTAT	-			P-0029203-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			271	17	332	0	ENST00000397062.3:c.82_87del	p.Ile28_Asp29del	p.I28_D29del	ENST00000397062	NM_006164.4	28	ATAGAT/-																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670856	134670856	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029203-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			234	28	362	0	ENST00000398015.3:c.767A>T	p.Lys256Met	p.K256M	ENST00000398015	NM_004441.4	256	aAg/aTg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131895052	131895052	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029203-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			184	11	288	0	ENST00000265335.6:c.206A>G	p.Asp69Gly	p.D69G	ENST00000265335		69	gAt/gGt																																																																														
MET	4233	MSKCC	GRCh37	7	116415090	116415090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029203-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			422	35	624	0	ENST00000397752.3:c.3184C>G	p.Leu1062Val	p.L1062V	ENST00000397752	NM_000245.2	1062	Ctg/Gtg																																																																														
SMO	6608	MSKCC	GRCh37	7	128829178	128829178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029203-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			130	15	258	0	ENST00000249373.3:c.186C>A	p.Ser62Arg	p.S62R	ENST00000249373	NM_005631.4	62	agC/agA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	513	650	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176710828	176710828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587784177		P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	106	454	0	ENST00000439151.2:c.6050G>A	p.Arg2017Gln	p.R2017Q	ENST00000439151	NM_022455.4	2017	cGg/cAg																																																																														
CRKL	1399	MSKCC	GRCh37	22	21304066	21304066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1444326760		P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	205	668	0	ENST00000354336.3:c.845G>A	p.Arg282His	p.R282H	ENST00000354336	NM_005207.3	282	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829569	72829569	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	151	594	0	ENST00000268489.5:c.7012C>T	p.Gln2338Ter	p.Q2338*	ENST00000268489	NM_006885.3	2338	Cag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11130286	11130287	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCCT			P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	153	571	2	ENST00000344626.4:c.2526_2530dup	p.Phe844TrpfsTer16	p.F844Wfs*16	ENST00000344626	NM_003072.3	842	cgg/cgGGCCTg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638440	176638440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	192	673	2	ENST00000439151.2:c.3040G>A	p.Asp1014Asn	p.D1014N	ENST00000439151	NM_022455.4	1014	Gac/Aac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039864	47039865	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	423	799	1	ENST00000329236.7:c.975dup	p.Ser326GlnfsTer39	p.S326Qfs*39	ENST00000329236	NM_001204466.1	325	gcc/gCcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0030471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	84	551	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057520000		P-0030471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	160	690	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061099	38061099	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs577631417		P-0030471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	13	60	0	ENST00000250448.2:c.890C>A	p.Pro297His	p.P297H	ENST00000250448	NM_004496.3	297	cCc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0030797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	62	626	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0030797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	100	533	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0030797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	96	566	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431117	49431117	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	28	572	0	ENST00000301067.7:c.10022A>C	p.Gln3341Pro	p.Q3341P	ENST00000301067	NM_003482.3	3341	cAa/cCa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803108	1803108	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	45	666	0	ENST00000260795.2:c.460A>G	p.Thr154Ala	p.T154A	ENST00000260795		154	Aca/Gca																																																																														
RB1	5925	MSKCC	GRCh37	13	48954299	48954299	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs1395304450		P-0032028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	19	349	0	ENST00000267163.4:c.1422-2A>T		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5274356	5274356	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	11	410	0	ENST00000357368.4:c.92-1G>T		p.X31_splice	ENST00000357368	NM_002850.3	31																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	14	674	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	82	575	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449727	8449727	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs772305581		P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	32	607	0	ENST00000356435.5:c.3986C>T	p.Pro1329Leu	p.P1329L	ENST00000356435		1329	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577052	7577053	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	131	813	0	ENST00000269305.4:c.885dup	p.His296SerfsTer10	p.H296Sfs*10	ENST00000269305	NM_001126112.2	295	-/T																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99156092	99156092	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1247349502		P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	30	674	0	ENST00000074304.5:c.772G>A	p.Val258Met	p.V258M	ENST00000074304	NM_001134224.1	258	Gtg/Atg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99181157	99181157	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1236305078		P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	30	720	0	ENST00000074304.5:c.2098G>A	p.Asp700Asn	p.D700N	ENST00000074304	NM_001134224.1	700	Gac/Aac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30668370	30668370	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	57	574	0	ENST00000376406.3:c.6142C>G	p.His2048Asp	p.H2048D	ENST00000376406	NM_014641.2	2048	Cat/Gat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	174	538	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29653028	29653028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756450772		P-0032254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	119	412	2	ENST00000358273.4:c.5026G>A	p.Ala1676Thr	p.A1676T	ENST00000358273	NM_001042492.2	1676	Gca/Aca																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048787	180048787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	197	770	2	ENST00000261937.6:c.1775G>A	p.Arg592His	p.R592H	ENST00000261937	NM_182925.4	592	cGc/cAc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980416	201980417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	148	529	0	ENST00000359651.3:c.154dup	p.Glu52GlyfsTer40	p.E52Gfs*40	ENST00000359651		51	ttg/ttGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	231	646	7	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	92	455	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	181	430	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	66	327	1	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627398	37627398	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	142	522	3	ENST00000447079.4:c.1313A>T	p.Lys438Met	p.K438M	ENST00000447079	NM_015083.1	438	aAg/aTg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2213964	2213964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	121	544	0	ENST00000326181.6:c.43G>T	p.Gly15Trp	p.G15W	ENST00000326181	NM_032271.2	15	Ggg/Tgg																																																																														
SDHA	6389	MSKCC	GRCh37	5	231041	231041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	111	532	0	ENST00000264932.6:c.821G>A	p.Gly274Asp	p.G274D	ENST00000264932	NM_004168.2	274	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	256	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	317	512	1	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109764	115109764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	188	666	0	ENST00000257566.3:c.2114C>T	p.Ser705Phe	p.S705F	ENST00000257566	NM_016569.3	705	tCc/tTc																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518660	204518660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	163	294	0	ENST00000367182.3:c.1323G>C	p.Glu441Asp	p.E441D	ENST00000367182	NM_001278516.1	441	gaG/gaC																																																																														
MTOR	2475	MSKCC	GRCh37	1	11294250	11294250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	306	509	1	ENST00000361445.4:c.2281G>T	p.Val761Phe	p.V761F	ENST00000361445	NM_004958.3	761	Gtc/Ttc																																																																														
PGR	5241	MSKCC	GRCh37	11	100999756	100999756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	285	649	0	ENST00000325455.5:c.46G>T	p.Gly16Cys	p.G16C	ENST00000325455	NM_001202474.3	16	Ggc/Tgc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45864839	45864839	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	292	914	0	ENST00000391945.4:c.1180T>C	p.Phe394Leu	p.F394L	ENST00000391945	NM_000400.3	394	Ttc/Ctc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794846	242794846	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	220	628	0	ENST00000334409.5:c.363C>A	p.Tyr121Ter	p.Y121*	ENST00000334409	NM_005018.2	121	taC/taA																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185195135	185195135	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	75	236	0	ENST00000265026.3:c.2452G>C	p.Glu818Gln	p.E818Q	ENST00000265026	NM_004721.4	818	Gag/Cag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730074	41730074	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs377167564		P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	215	437	0	ENST00000242208.4:c.455G>T	p.Arg152Leu	p.R152L	ENST00000242208	NM_002192.2	152	cGt/cTt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410571	63410571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	176	387	0	ENST00000330258.3:c.2596G>T	p.Val866Leu	p.V866L	ENST00000330258	NM_152424.3	866	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	235	649	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347909	347909	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	158	1041	0	ENST00000262320.3:c.1597C>T	p.Arg533Ter	p.R533*	ENST00000262320	NM_003502.3	533	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs137854598		P-0032275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	137	294	1	ENST00000304494.5:c.305C>A	p.Ala102Glu	p.A102E	ENST00000304494	NM_000077.4	102	gCg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs137854598		P-0032275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	137	294	1	ENST00000304494.5:c.305C>A	p.Ala102Glu	p.A102E	ENST00000304494	NM_000077.4	102	gCg/gAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426795	212426795	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	65	368	0	ENST00000342788.4:c.2320A>G	p.Ser774Gly	p.S774G	ENST00000342788	NM_005235.2	774	Agt/Ggt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729816	41729816	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	35	383	0	ENST00000242208.4:c.713T>C	p.Leu238Pro	p.L238P	ENST00000242208	NM_002192.2	238	cTg/cCg																																																																														
AR	367	MSKCC	GRCh37	X	66863135	66863135	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	168	328	0	ENST00000374690.3:c.1654T>C	p.Tyr552His	p.Y552H	ENST00000374690	NM_000044.3	552	Tat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	189	836	0	ENST00000269305.4:c.434T>G	p.Leu145Arg	p.L145R	ENST00000269305	NM_001126112.2	145	cTg/cGg																																																																														
NF1	4763	MSKCC	GRCh37	17	29509596	29509596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1064794273		P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	93	525	0	ENST00000358273.4:c.801G>A	p.Trp267Ter	p.W267*	ENST00000358273	NM_001042492.2	267	tgG/tgA																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111884997	111884997	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	77	518	0	ENST00000341259.2:c.998del	p.Gly333AlafsTer40	p.G333Afs*40	ENST00000341259	NM_005475.2	332	aGg/ag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645120	86645120	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1210180190		P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	54	294	0	ENST00000274376.6:c.1192C>T	p.Arg398Ter	p.R398*	ENST00000274376	NM_002890.2	398	Cga/Tga																																																																														
PGR	5241	MSKCC	GRCh37	11	100998283	100998283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	31	122	0	ENST00000325455.5:c.1519G>A	p.Ala507Thr	p.A507T	ENST00000325455	NM_001202474.3	507	Gcg/Acg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778591	3778591	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs370693698		P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	223	655	0	ENST00000262367.5:c.6457G>T	p.Gly2153Cys	p.G2153C	ENST00000262367	NM_004380.2	2153	Ggt/Tgt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965658	93965658	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751194338		P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	31	429	0	ENST00000369303.4:c.2270G>A	p.Arg757Lys	p.R757K	ENST00000369303	NM_004440.3	757	aGg/aAg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129345	152129345	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1362946000		P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	65	456	0	ENST00000206249.3:c.298C>G	p.Leu100Val	p.L100V	ENST00000206249	NM_000125.3	100	Ctc/Gtc																																																																														
PARK2	0	MSKCC	GRCh37	6	162864418	162864418	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	33	406	0	ENST00000366898.1:c.95A>T	p.Lys32Met	p.K32M	ENST00000366898	NM_004562.2	32	aAg/aTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636815	8636815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	90	397	0	ENST00000356435.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000356435		32	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	104	756	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	46	648	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	31	255	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112154963	112154963	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660802		P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	99	711	1	ENST00000257430.4:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000257430	NM_000038.5	412	Cag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	150	951	0	ENST00000329236.7:c.1459+1G>A		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573642	48573642	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	25	459	0	ENST00000342988.3:c.226A>T	p.Arg76Ter	p.R76*	ENST00000342988	NM_005359.5	76	Aga/Tga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730132	41730132	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	68	373	0	ENST00000242208.4:c.397A>G	p.Arg133Gly	p.R133G	ENST00000242208	NM_002192.2	133	Agg/Ggg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0032349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	116	346	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0032349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	120	532	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
FANCC	2176	MSKCC	GRCh37	9	97873861	97873861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	61	486	0	ENST00000289081.3:c.1213G>A	p.Glu405Lys	p.E405K	ENST00000289081	NM_000136.2	405	Gag/Aag																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480590	50480590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	27	351	0	ENST00000394963.4:c.460G>C	p.Glu154Gln	p.E154Q	ENST00000394963	NM_003076.4	154	Gaa/Caa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121908585		P-0032359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	385	583	1	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	111	383	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115251169	115251169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	67	489	0	ENST00000369535.4:c.557G>T	p.Cys186Phe	p.C186F	ENST00000369535	NM_002524.4	186	tGt/tTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458814	120458814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	51	543	0	ENST00000256646.2:c.6531G>T	p.Gln2177His	p.Q2177H	ENST00000256646	NM_024408.3	2177	caG/caT																																																																														
WT1	7490	MSKCC	GRCh37	11	32456314	32456314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	54	479	0	ENST00000332351.3:c.578C>A	p.Ala193Asp	p.A193D	ENST00000332351	NM_024426.4	193	gCc/gAc																																																																														
MGA	23269	MSKCC	GRCh37	15	41988640	41988640	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	50	449	0	ENST00000219905.7:c.1432A>T	p.Arg478Ter	p.R478*	ENST00000219905	NM_001164273.1	478	Aga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498431	89498431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	42	349	0	ENST00000336596.2:c.2403C>A	p.Phe801Leu	p.F801L	ENST00000336596	NM_005233.5	801	ttC/ttA																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851624	134851624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	53	430	0	ENST00000398015.3:c.1030C>T	p.Pro344Ser	p.P344S	ENST00000398015	NM_004441.4	344	Cct/Tct																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144078	55144078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	76	382	0	ENST00000257290.5:c.1907G>A	p.Ser636Asn	p.S636N	ENST00000257290	NM_006206.4	636	aGt/aAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539386	187539386	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	47	428	0	ENST00000441802.2:c.8354A>T	p.Asp2785Val	p.D2785V	ENST00000441802	NM_005245.3	2785	gAt/gTt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518687	103518687	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs570252494		P-0033714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	154	326	0	ENST00000355739.4:c.2275C>T	p.Arg759Trp	p.R759W	ENST00000355739	NM_000123.3	759	Cgg/Tgg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701892	43701892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	89	299	0	ENST00000382044.4:c.5353C>G	p.Leu1785Val	p.L1785V	ENST00000382044	NM_001141980.1	1785	Ctt/Gtt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858648	9858648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	219	575	0	ENST00000330684.3:c.2753C>A	p.Pro918His	p.P918H	ENST00000330684	NM_001134407.1	918	cCc/cAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18439803	18439803	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	124	349	0	ENST00000266497.5:c.701T>A	p.Leu234Gln	p.L234Q	ENST00000266497		234	cTa/cAa																																																																														
CD276	80381	MSKCC	GRCh37	15	74001998	74001998	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	135	583	0	ENST00000318443.5:c.1514A>G	p.Asp505Gly	p.D505G	ENST00000318443	NM_001024736.1	505	gAc/gGc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483904	88483904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371770675		P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	137	635	1	ENST00000360948.2:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000360948	NM_001012338.2	556	Gag/Aag																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099414	4099414	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	257	553	0	ENST00000262948.5:c.706-2A>G		p.X236_splice	ENST00000262948	NM_030662.3	236																																																																															
RRAS	6237	MSKCC	GRCh37	19	50143243	50143243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	36	352	0	ENST00000246792.3:c.113G>A	p.Gly38Asp	p.G38D	ENST00000246792	NM_006270.3	38	gGc/gAc																																																																														
ALK	238	MSKCC	GRCh37	2	29543628	29543628	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	198	515	0	ENST00000389048.3:c.1535A>T	p.Gln512Leu	p.Q512L	ENST00000389048	NM_004304.4	512	cAg/cTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41547900	41547900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	41	450	0	ENST00000263253.7:c.2881G>C	p.Glu961Gln	p.E961Q	ENST00000263253	NM_001429.3	961	Gaa/Caa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89176398	89176398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	71	309	0	ENST00000336596.2:c.128G>T	p.Gly43Val	p.G43V	ENST00000336596	NM_005233.5	43	gGc/gTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462335	89462335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	102	489	0	ENST00000336596.2:c.1807G>C	p.Glu603Gln	p.E603Q	ENST00000336596	NM_005233.5	603	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	260	749	1	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696405	47696405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	141	554	0	ENST00000347630.2:c.418G>T	p.Asp140Tyr	p.D140Y	ENST00000347630	NM_001007230.1	140	Gat/Tat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44937718	44937718	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	111	596	0	ENST00000377967.4:c.2906T>G	p.Val969Gly	p.V969G	ENST00000377967	NM_021140.2	969	gTa/gGa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	126	550	0	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs113954997		P-0034133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	104	459	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983049	201983049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	129	606	1	ENST00000359651.3:c.898G>A	p.Glu300Lys	p.E300K	ENST00000359651		300	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444363	49444363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	127	486	1	ENST00000301067.7:c.3008C>A	p.Pro1003Gln	p.P1003Q	ENST00000301067	NM_003482.3	1003	cCa/cAa																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281956	49281956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	135	596	0	ENST00000282018.3:c.1003C>T	p.Pro335Ser	p.P335S	ENST00000282018	NM_020377.2	335	Cct/Tct																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040998	47040998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	137	304	0	ENST00000329236.7:c.1294C>T	p.Gln432Ter	p.Q432*	ENST00000329236	NM_001204466.1	432	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	90	481	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	88	909	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	30	173	0	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	30	173	0	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551696	150551696	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1351372864		P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	25	325	0	ENST00000369026.2:c.311G>T	p.Arg104Leu	p.R104L	ENST00000369026	NM_021960.4	104	cGc/cTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149434821	149434821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	72	748	1	ENST00000286301.3:c.2633C>A	p.Pro878His	p.P878H	ENST00000286301	NM_005211.3	878	cCt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108121684	108121684	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	61	546	0	ENST00000278616.4:c.1492G>T	p.Glu498Ter	p.E498*	ENST00000278616	NM_000051.3	498	Gag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344479	118344479	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	43	273	0	ENST00000534358.1:c.2605G>T	p.Glu869Ter	p.E869*	ENST00000534358	NM_005933.3	869	Gag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923423	9923423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	43	700	0	ENST00000330684.3:c.1864C>A	p.Pro622Thr	p.P622T	ENST00000330684	NM_001134407.1	622	Cct/Act																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610361	10610361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	68	853	0	ENST00000171111.5:c.349G>A	p.Glu117Lys	p.E117K	ENST00000171111	NM_203500.1	117	Gag/Aag																																																																														
ALK	238	MSKCC	GRCh37	2	29443655	29443655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	56	687	0	ENST00000389048.3:c.3562C>A	p.Gln1188Lys	p.Q1188K	ENST00000389048	NM_004304.4	1188	Caa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419938	41419938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	20	542	0	ENST00000373198.4:c.383G>T	p.Gly128Val	p.G128V	ENST00000373198	NM_133170.3	128	gGt/gTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213804	66213804	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	28	457	0	ENST00000273854.3:c.2626G>T	p.Glu876Ter	p.E876*	ENST00000273854	NM_004439.5	876	Gag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517765	187517765	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	26	242	0	ENST00000441802.2:c.12929C>G	p.Pro4310Arg	p.P4310R	ENST00000441802	NM_005245.3	4310	cCc/cGc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524890	187524890	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	72	794	2	ENST00000441802.2:c.10790del	p.Gly3597AlafsTer3	p.G3597Afs*3	ENST00000441802	NM_005245.3	3597	gGc/gc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526321	31526321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	85	1023	0	ENST00000344624.3:c.719G>C	p.Arg240Pro	p.R240P	ENST00000344624		240	cGa/cCa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520524	176520524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	78	900	0	ENST00000292408.4:c.1369G>T	p.Asp457Tyr	p.D457Y	ENST00000292408	NM_213647.1	457	Gac/Tac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168743	32168743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	47	701	0	ENST00000375023.3:c.4180C>T	p.Pro1394Ser	p.P1394S	ENST00000375023	NM_004557.3	1394	Cct/Tct																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345752	152345752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	23	274	0	ENST00000359321.1:c.818G>T	p.Gly273Val	p.G273V	ENST00000359321	NM_005431.1	273	gGa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	507	487	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522569	106522569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746783339		P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	275	360	0	ENST00000359195.3:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000359195	NM_002649.2	849	cGa/cAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786766	3786766	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587783496		P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	464	486	0	ENST00000262367.5:c.4445A>G	p.Tyr1482Cys	p.Y1482C	ENST00000262367	NM_004380.2	1482	tAc/tGc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280147	66280147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	82	276	1	ENST00000273854.3:c.1542C>A	p.Ser514Arg	p.S514R	ENST00000273854	NM_004439.5	514	agC/agA																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748052	72748052	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	213	422	0	ENST00000357731.5:c.126G>C	p.Trp42Cys	p.W42C	ENST00000357731	NM_173808.2	42	tgG/tgC																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78432574	78432574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	144	418	0	ENST00000370768.2:c.409G>T	p.Ala137Ser	p.A137S	ENST00000370768	NM_003902.3	137	Gct/Tct																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841488	156841488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	470	546	0	ENST00000524377.1:c.791C>A	p.Thr264Lys	p.T264K	ENST00000524377	NM_002529.3	264	aCg/aAg																																																																														
CBL	867	MSKCC	GRCh37	11	119144734	119144734	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	263	269	0	ENST00000264033.4:c.747G>T	p.Gln249His	p.Q249H	ENST00000264033	NM_005188.3	249	caG/caT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46205275	46205275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	394	373	0	ENST00000334344.6:c.359C>A	p.Pro120Gln	p.P120Q	ENST00000334344	NM_152641.2	120	cCa/cAa																																																																														
RB1	5925	MSKCC	GRCh37	13	49033843	49033843	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	319	341	0	ENST00000267163.4:c.1981del	p.Arg661GlyfsTer2	p.R661Gfs*2	ENST00000267163	NM_000321.2	660	ctC/ct																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046554	30046554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	578	496	0	ENST00000331968.5:c.2629G>A	p.Gly877Arg	p.G877R	ENST00000331968	NM_002742.2	877	Ggg/Agg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786138	3786138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	595	667	0	ENST00000262367.5:c.4627G>C	p.Asp1543His	p.D1543H	ENST00000262367	NM_004380.2	1543	Gat/Cat																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647649	23647649	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	234	255	0	ENST00000261584.4:c.218A>G	p.Lys73Arg	p.K73R	ENST00000261584	NM_024675.3	73	aAa/aGa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828302	72828302	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	422	448	0	ENST00000268489.5:c.8279T>A	p.Met2760Lys	p.M2760K	ENST00000268489	NM_006885.3	2760	aTg/aAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228801	36228801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	797	617	2	ENST00000222270.7:c.7700G>T	p.Arg2567Leu	p.R2567L	ENST00000222270	NM_014727.1	2567	cGt/cTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462330	89462330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751984150		P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	40	351	1	ENST00000336596.2:c.1802C>T	p.Thr601Ile	p.T601I	ENST00000336596	NM_005233.5	601	aCa/aTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480348	89480348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	32	214	0	ENST00000336596.2:c.2185G>A	p.Gly729Arg	p.G729R	ENST00000336596	NM_005233.5	729	Ggg/Agg																																																																														
ATR	545	MSKCC	GRCh37	3	142185274	142185274	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	164	397	0	ENST00000350721.4:c.6789A>T	p.Gln2263His	p.Q2263H	ENST00000350721	NM_001184.3	2263	caA/caT																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149498314	149498314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	387	414	0	ENST00000261799.4:c.2900A>G	p.Lys967Arg	p.K967R	ENST00000261799	NM_002609.3	967	aAa/aGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	732	750	1	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
SETD8	0	MSKCC	GRCh37	12	123889566	123889566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	170	202	2	ENST00000330479.4:c.793G>T	p.Asp265Tyr	p.D265Y	ENST00000330479	NM_020382.3	265	Gac/Tac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932944	39932944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	602	597	0	ENST00000378444.4:c.1655C>T	p.Ala552Val	p.A552V	ENST00000378444	NM_001123385.1	552	gCt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0036964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	23	544	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89846329	89846329	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	35	547	0	ENST00000389301.3:c.1663A>T	p.Ile555Phe	p.I555F	ENST00000389301	NM_000135.2	555	Atc/Ttc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	21	638	0	ENST00000171111.5:c.1409G>C	p.Arg470Pro	p.R470P	ENST00000171111	NM_203500.1	470	cGt/cCt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0036979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	59	707	2	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912414	32912414	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs80358638		P-0036979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	22	134	0	ENST00000380152.3:c.3922G>T	p.Glu1308Ter	p.E1308*	ENST00000380152		1308	Gaa/Taa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998919	11998919	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	28	135	0	ENST00000353533.5:c.421G>T	p.Glu141Ter	p.E141*	ENST00000353533	NM_003010.3	141	Gaa/Taa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390970	139390970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	52	1063	1	ENST00000277541.6:c.7221C>A	p.Ser2407Arg	p.S2407R	ENST00000277541	NM_017617.3	2407	agC/agA																																																																														
ATRX	546	MSKCC	GRCh37	X	76849242	76849242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	28	301	0	ENST00000373344.5:c.6034G>A	p.Glu2012Lys	p.E2012K	ENST00000373344	NM_000489.3	2012	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577029	7577042	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCCTGGGGGCA	GCTCCCTGGGGGCA	-			P-0037082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	219	572	0	ENST00000269305.4:c.896_909del	p.Leu299HisfsTer2	p.L299Hfs*2	ENST00000269305	NM_001126112.2	299	cTGCCCCCAGGGAGC/c																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0037156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	163	401	0	ENST00000288135.5:c.1669_1674del	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458372	120458372	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	20	435	0	ENST00000256646.2:c.6973C>T	p.Gln2325Ter	p.Q2325*	ENST00000256646	NM_024408.3	2325	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443772	49443826	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAGAGTGGGTGGTGTGGGGGCCACCGGTGCACGTGGCTCTTCCTGTTCTTCAC	ATGAGAGTGGGTGGTGTGGGGGCCACCGGTGCACGTGGCTCTTCCTGTTCTTCAC	-			P-0037165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	35	719	0	ENST00000301067.7:c.3545_3599del	p.Cys1182SerfsTer12	p.C1182Sfs*12	ENST00000301067	NM_003482.3	1182	tGTGAAGAACAGGAAGAGCCACGTGCACCGGTGGCCCCCACACCACCCACTCTCATc/tc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	18	603	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574005	7574005	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	52	825	0	ENST00000269305.4:c.1022T>A	p.Phe341Tyr	p.F341Y	ENST00000269305	NM_001126112.2	341	tTc/tAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436312	110436312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	21	285	0	ENST00000375856.3:c.2089G>T	p.Ala697Ser	p.A697S	ENST00000375856	NM_003749.2	697	Gcc/Tcc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450268	50450268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	43	543	0	ENST00000331340.3:c.452G>T	p.Gly151Val	p.G151V	ENST00000331340	NM_006060.4	151	gGg/gTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045882	47045882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	17	327	2	ENST00000329236.7:c.2443C>T	p.Arg815Trp	p.R815W	ENST00000329236	NM_001204466.1	815	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	235	608	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618616	37618616	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	122	670	0	ENST00000447079.4:c.292G>T	p.Glu98Ter	p.E98*	ENST00000447079	NM_015083.1	98	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	252	767	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233279	69233279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	131	373	0	ENST00000462284.1:c.1144G>A	p.Glu382Lys	p.E382K	ENST00000462284	NM_002392.5	382	Gag/Aag																																																																														
MAX	4149	MSKCC	GRCh37	14	65544705	65544705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	305	839	0	ENST00000358664.4:c.221del	p.Met74SerfsTer96	p.M74Sfs*96	ENST00000358664	NM_002382.4	74	aTg/ag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470539	25470539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	298	801	0	ENST00000264709.3:c.935C>T	p.Ser312Phe	p.S312F	ENST00000264709	NM_175629.2	312	tCt/tTt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513238	44513238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	161	410	0	ENST00000291552.4:c.697G>T	p.Asp233Tyr	p.D233Y	ENST00000291552	NM_006758.2	233	Gat/Tat																																																																														
IRF4	3662	MSKCC	GRCh37	6	401453	401453	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1407719860		P-0037226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	212	314	0	ENST00000380956.4:c.775C>T	p.Arg259Trp	p.R259W	ENST00000380956	NM_001195286.1	259	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	148	422	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012444	29012444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	140	417	0	ENST00000282397.4:c.427C>A	p.Pro143Thr	p.P143T	ENST00000282397	NM_002019.4	143	Ccc/Acc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81962185	81962185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	92	591	0	ENST00000359376.3:c.2537G>A	p.Gly846Glu	p.G846E	ENST00000359376	NM_002661.3	846	gGg/gAg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120452	70120452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	384	655	0	ENST00000245479.2:c.1454G>T	p.Gly485Val	p.G485V	ENST00000245479	NM_000346.3	485	gGg/gTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602256	10602256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	479	451	0	ENST00000171111.5:c.1322A>G	p.Glu441Gly	p.E441G	ENST00000171111	NM_203500.1	441	gAg/gGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770575	40770575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	74	465	0	ENST00000373198.4:c.2807G>T	p.Arg936Leu	p.R936L	ENST00000373198	NM_133170.3	936	cGa/cTa																																																																														
RYBP	23429	MSKCC	GRCh37	3	72428267	72428267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	321	444	0	ENST00000477973.2:c.623G>C	p.Asp209His	p.D209H	ENST00000477973	NM_012234.5	209	Gat/Cat																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729775	41729775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	147	358	0	ENST00000242208.4:c.754G>A	p.Ala252Thr	p.A252T	ENST00000242208	NM_002192.2	252	Gcc/Acc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739644	41739644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	280	557	0	ENST00000242208.4:c.329G>T	p.Arg110Met	p.R110M	ENST00000242208	NM_002192.2	110	aGg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211081	55211081	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	393	448	0	ENST00000275493.2:c.324A>T	p.Arg108Ser	p.R108S	ENST00000275493	NM_005228.3	108	agA/agT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349410	89349410	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs758010258		P-0037238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	56	834	0	ENST00000301030.4:c.3540G>T	p.Glu1180Asp	p.E1180D	ENST00000301030	NM_001256183.1	1180	gaG/gaT																																																																														
MSI2	124540	MSKCC	GRCh37	17	55693366	55693366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	99	619	0	ENST00000284073.2:c.573G>T	p.Met191Ile	p.M191I	ENST00000284073	NM_138962.2	191	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0037239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	39	575	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713513	30713513	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	27	574	0	ENST00000359013.4:c.915del	p.Tyr306MetfsTer19	p.Y306Mfs*19	ENST00000359013	NM_001024847.2	305	Ccc/cc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1085307113		P-0037254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	74	501	0	ENST00000361445.4:c.7280T>A	p.Leu2427Gln	p.L2427Q	ENST00000361445	NM_004958.3	2427	cTg/cAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033730	48033730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	30	352	0	ENST00000234420.5:c.3941A>G	p.Gln1314Arg	p.Q1314R	ENST00000234420	NM_000179.2	1314	cAa/cGa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61761026	61761026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	33	314	0	ENST00000401558.2:c.7G>A	p.Ala3Thr	p.A3T	ENST00000401558	NM_003400.3	3	Gca/Aca																																																																														
VHL	7428	MSKCC	GRCh37	3	10188215	10188215	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	72	544	1	ENST00000256474.2:c.358A>T	p.Arg120Ter	p.R120*	ENST00000256474	NM_000551.3	120	Aga/Tga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47108609	47108609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0037254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	37	379	0	ENST00000409792.3:c.6061-1G>A		p.X2021_splice	ENST00000409792	NM_014159.6	2021																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0037265-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			51	354	462	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037265-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			60	466	602	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913517		P-0037285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	60	451	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25457270	25457271	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0037285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	65	541	0	ENST00000264709.3:c.2615_2616dup	p.His873SerfsTer9	p.H873Sfs*9	ENST00000264709	NM_175629.2	872	-/TC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	53	466	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044907	47044907	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	75	940	0	ENST00000329236.7:c.2003del	p.Gly668AlafsTer56	p.G668Afs*56	ENST00000329236	NM_001204466.1	667	Ggg/gg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138197263	138197263	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	34	300	0	ENST00000237289.4:c.765T>A	p.His255Gln	p.H255Q	ENST00000237289	NM_001270507.1	255	caT/caA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089478	27089478	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	49	625	0	ENST00000324856.7:c.2434C>T	p.Gln812Ter	p.Q812*	ENST00000324856	NM_006015.4	812	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108155055	108155055	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	39	482	0	ENST00000278616.4:c.3848T>G	p.Leu1283Arg	p.L1283R	ENST00000278616	NM_000051.3	1283	cTa/cGa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247459	71247459	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	47	623	0	ENST00000318789.4:c.74A>T	p.His25Leu	p.H25L	ENST00000318789	NM_032682.5	25	cAc/cTc																																																																														
NBN	4683	MSKCC	GRCh37	8	90982700	90982700	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	43	377	0	ENST00000265433.3:c.788T>G	p.Phe263Cys	p.F263C	ENST00000265433	NM_002485.4	263	tTt/tGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0037326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	77	554	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0037326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	29	309	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	27	519	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	30	401	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058499	72058499	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	37	452	1	ENST00000357731.5:c.940+1G>A		p.X314_splice	ENST00000357731	NM_173808.2	314																																																																															
MGA	23269	MSKCC	GRCh37	15	41989060	41989060	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	22	590	0	ENST00000219905.7:c.1852C>T	p.Arg618Ter	p.R618*	ENST00000219905	NM_001164273.1	618	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710659	114710659	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	34	352	0	ENST00000543371.1:c.144del	p.Val49SerfsTer59	p.V49Sfs*59	ENST00000543371	NM_001198531.1	48	ctA/ct																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161690	56161690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	10	547	0	ENST00000399503.3:c.1187G>A	p.Arg396His	p.R396H	ENST00000399503	NM_005921.1	396	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112173637	112173637	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	14	429	0	ENST00000257430.4:c.2347del	p.Ala783HisfsTer37	p.A783Hfs*37	ENST00000257430	NM_000038.5	782	aaG/aa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946418	71946418	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	201	615	0	ENST00000298229.2:c.2582A>T	p.Glu861Val	p.E861V	ENST00000298229	NM_001567.3	861	gAg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427645	49427645	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs984314815		P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	348	537	1	ENST00000301067.7:c.10843G>T	p.Ala3615Ser	p.A3615S	ENST00000301067	NM_003482.3	3615	Gct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577514	7577522	+	inframe_deletion	In_Frame_Del	DEL	GTGATGATG	GTGATGATG	-			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	336	543	0	ENST00000269305.4:c.759_767del	p.Ile254_Thr256del	p.I254_T256del	ENST00000269305	NM_001126112.2	253	acCATCATCACa/aca																																																																														
NF1	4763	MSKCC	GRCh37	17	29654737	29654737	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs771529172		P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	199	225	0	ENST00000358273.4:c.5489G>T	p.Arg1830Leu	p.R1830L	ENST00000358273	NM_001042492.2	1830	cGc/cTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31020700	31020700	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	131	181	0	ENST00000375687.4:c.997A>C	p.Met333Leu	p.M333L	ENST00000375687	NM_015338.5	333	Atg/Ctg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944512	40944512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	106	410	0	ENST00000373198.4:c.1990T>C	p.Phe664Leu	p.F664L	ENST00000373198	NM_133170.3	664	Ttt/Ctt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876407	35876407	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	340	486	0	ENST00000303115.3:c.1199T>A	p.Val400Glu	p.V400E	ENST00000303115	NM_002185.3	400	gTg/gAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341893	8341893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	119	453	0	ENST00000356435.5:c.4747G>T	p.Gly1583Cys	p.G1583C	ENST00000356435		1583	Ggc/Tgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914768	39914768	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0037378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	206	171	0	ENST00000378444.4:c.4596-2A>T		p.X1532_splice	ENST00000378444	NM_001123385.1	1532																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50484288	50484288	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	53	666	0	ENST00000394963.4:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000394963	NM_003076.4	350	Caa/Taa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245067	53245067	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	17	408	0	ENST00000375401.3:c.873C>G	p.Phe291Leu	p.F291L	ENST00000375401	NM_004187.3	291	ttC/ttG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	95	505	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0037441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	269	682	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913399		P-0037441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	94	320	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851568	134851568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	89	484	0	ENST00000398015.3:c.974G>A	p.Gly325Asp	p.G325D	ENST00000398015	NM_004441.4	325	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0037456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	73	551	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	31	259	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0037456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	81	609	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792755	33792757	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs781757114		P-0037456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	10	63	1	ENST00000498907.2:c.564_566del	p.Pro189del	p.P189del	ENST00000498907	NM_004364.3	188	ccGCCc/ccc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412618	139412618	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	51	574	0	ENST00000277541.6:c.1226G>C	p.Cys409Ser	p.C409S	ENST00000277541	NM_017617.3	409	tGc/tCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0037476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	614	673	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068078	94068078	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765322526		P-0037476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	155	362	0	ENST00000369303.4:c.884G>A	p.Arg295His	p.R295H	ENST00000369303	NM_004440.3	295	cGt/cAt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429960	78429960	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	185	514	0	ENST00000370768.2:c.919G>C	p.Val307Leu	p.V307L	ENST00000370768	NM_003902.3	307	Gtt/Ctt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409116	139409148	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCCGCACACTCATCGATGTTGATGTTACACA	TGCCCGCACACTCATCGATGTTGATGTTACACA	GGCATGCC			P-0037476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	268	801	2	ENST00000277541.6:c.2021_2053delinsGGCATGCC	p.Met674ArgfsTer90	p.M674Rfs*90	ENST00000277541	NM_017617.3	674	aTGTGTAACATCAACATCGATGAGTGTGCGGGCAac/aGGCATGCCac																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0037477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	23	244	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																														
NF1	4763	MSKCC	GRCh37	17	29670106	29670106	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs878853912		P-0037477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	50	533	0	ENST00000358273.4:c.7142A>G	p.Asn2381Ser	p.N2381S	ENST00000358273	NM_001042492.2	2381	aAt/aGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434730	49434731	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0037477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	186	665	0	ENST00000301067.7:c.6822_6823del	p.Pro2276ThrfsTer22	p.P2276Tfs*22	ENST00000301067	NM_003482.3	2274	tcGCcc/tccc																																																																														
MGA	23269	MSKCC	GRCh37	15	42021360	42021360	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0037507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	192	253	0	ENST00000219905.7:c.3658-2A>T		p.X1220_splice	ENST00000219905	NM_001164273.1	1220																																																																															
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	498	466	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604773	48604773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	140	294	0	ENST00000342988.3:c.1597del	p.Leu533SerfsTer4	p.L533Sfs*4	ENST00000342988	NM_005359.5	532	gCc/gc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228043	36228043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	713	475	0	ENST00000222270.7:c.7429G>T	p.Glu2477Ter	p.E2477*	ENST00000222270	NM_014727.1	2477	Gag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251577	212251577	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0037507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	81	303	0	ENST00000342788.4:c.3481+1G>T		p.X1161_splice	ENST00000342788	NM_005235.2	1161																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815316	32815316	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	147	546	0	ENST00000354258.4:c.2057C>G	p.Ser686Cys	p.S686C	ENST00000354258	NM_000593.5	686	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0037577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	181	617	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427224	49427224	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	39	819	0	ENST00000301067.7:c.11264A>G	p.Gln3755Arg	p.Q3755R	ENST00000301067	NM_003482.3	3755	cAg/cGg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865169	57865169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	63	844	0	ENST00000228682.2:c.2646C>A	p.Asp882Glu	p.D882E	ENST00000228682	NM_005269.2	882	gaC/gaA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251703	212251703	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	70	392	0	ENST00000342788.4:c.3356T>C	p.Val1119Ala	p.V1119A	ENST00000342788	NM_005235.2	1119	gTc/gCc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35860974	35860974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	33	330	0	ENST00000303115.3:c.103C>G	p.Leu35Val	p.L35V	ENST00000303115	NM_002185.3	35	Ctg/Gtg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0037665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	81	420	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	384	555	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																														
NF2	4771	MSKCC	GRCh37	22	30051652	30051652	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	158	254	0	ENST00000338641.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000338641	NM_000268.3	196	Cga/Tga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557596	21557596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	104	531	0	ENST00000382592.4:c.2249G>T	p.Gly750Val	p.G750V	ENST00000382592	NM_014572.2	750	gGt/gTt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441328	52441328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	191	398	0	ENST00000460680.1:c.442G>T	p.Glu148Ter	p.E148*	ENST00000460680	NM_004656.3	148	Gag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	44	597	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	129	698	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
NF1	4763	MSKCC	GRCh37	17	29667521	29667521	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	36	429	0	ENST00000358273.4:c.6922-2A>C		p.X2308_splice	ENST00000358273	NM_001042492.2	2308																																																																															
EZH1	2145	MSKCC	GRCh37	17	40865263	40865263	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	65	552	0	ENST00000428826.2:c.1168A>T	p.Arg390Trp	p.R390W	ENST00000428826		390	Agg/Tgg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57466795	57466795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	20	140	0	ENST00000371085.3:c.14G>A	p.Gly5Glu	p.G5E	ENST00000371085	NM_000516.4	5	gGg/gAg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205175	128205175	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	64	668	0	ENST00000341105.2:c.266T>A	p.Leu89Ter	p.L89*	ENST00000341105	NM_032638.4	89	tTg/tAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542166	187542166	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	81	383	0	ENST00000441802.2:c.5574del	p.Phe1858LeufsTer8	p.F1858Lfs*8	ENST00000441802	NM_005245.3	1858	ttT/tt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149439405	149439405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	164	566	0	ENST00000286301.3:c.1990G>C	p.Glu664Gln	p.E664Q	ENST00000286301	NM_005211.3	664	Gag/Cag																																																																														
SMO	6608	MSKCC	GRCh37	7	128852183	128852183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	255	845	0	ENST00000249373.3:c.2255C>A	p.Ala752Glu	p.A752E	ENST00000249373	NM_005631.4	752	gCa/gAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227777	53227777	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	135	703	0	ENST00000375401.3:c.2411G>C	p.Arg804Pro	p.R804P	ENST00000375401	NM_004187.3	804	cGg/cCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	550	428	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599868	10599868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	339	756	1	ENST00000171111.5:c.1708G>A	p.Gly570Arg	p.G570R	ENST00000171111	NM_203500.1	570	Gga/Aga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18524191	18524191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	174	639	0	ENST00000266497.5:c.1703C>A	p.Ala568Glu	p.A568E	ENST00000266497		568	gCa/gAa																																																																														
INSR	3643	MSKCC	GRCh37	19	7128930	7128930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	120	572	0	ENST00000302850.5:c.2878G>T	p.Gly960Cys	p.G960C	ENST00000302850	NM_000208.2	960	Ggc/Tgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138549	11138549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	341	755	0	ENST00000344626.4:c.3305T>C	p.Phe1102Ser	p.F1102S	ENST00000344626	NM_003072.3	1102	tTc/tCc																																																																														
PAK7	0	MSKCC	GRCh37	20	9624788	9624788	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	197	436	0	ENST00000353224.5:c.189G>C	p.Gln63His	p.Q63H	ENST00000353224	NM_177990.2	63	caG/caC																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670361	30670361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	286	584	0	ENST00000376406.3:c.6071C>T	p.Thr2024Ile	p.T2024I	ENST00000376406	NM_014641.2	2024	aCa/aTa																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5549514	5549514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs544152379		P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	359	780	0	ENST00000397747.3:c.541C>T	p.Arg181Cys	p.R181C	ENST00000397747	NM_025239.3	181	Cgc/Tgc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221293	1221298	+	stop_gained	Nonsense_Mutation	ONP	CGCCAT	CGCCAT	GGCAAC			P-0037770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	327	698	0	ENST00000326873.7:c.816_821delinsGGCAAC	p.Tyr272_Ile274delinsTer	p.Y272_I274delins*	ENST00000326873	NM_000455.4	272	taCGCCATc/taGGCAACc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	69	425	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	45	697	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
YAP1	10413	MSKCC	GRCh37	11	101984924	101984924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	31	379	0	ENST00000282441.5:c.371G>C	p.Arg124Pro	p.R124P	ENST00000282441	NM_001130145.2	124	cGa/cCa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779332	3779332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	87	775	1	ENST00000262367.5:c.5716C>T	p.Pro1906Ser	p.P1906S	ENST00000262367	NM_004380.2	1906	Cct/Tct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088772	27088772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	93	636	0	ENST00000324856.7:c.2381G>T	p.Gly794Val	p.G794V	ENST00000324856	NM_006015.4	794	gGg/gTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120512284	120512284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	54	556	0	ENST00000256646.2:c.958G>C	p.Gly320Arg	p.G320R	ENST00000256646	NM_024408.3	320	Gga/Cga																																																																														
NUF2	83540	MSKCC	GRCh37	1	163297340	163297340	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	56	421	0	ENST00000271452.3:c.186A>T	p.Glu62Asp	p.E62D	ENST00000271452	NM_145697.2	62	gaA/gaT																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771551	112771552	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	72	448	0	ENST00000369452.4:c.1727dup	p.Pro577SerfsTer9	p.P577Sfs*9	ENST00000369452	NM_007373.3	575	cag/caGg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986956	36986956	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	169	678	0	ENST00000354822.5:c.733A>T	p.Lys245Ter	p.K245*	ENST00000354822	NM_001079668.2	245	Aaa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218440	36218440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	71	753	0	ENST00000222270.7:c.4219G>T	p.Gly1407Trp	p.G1407W	ENST00000222270	NM_014727.1	1407	Ggg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790124	40790124	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	49	690	0	ENST00000373198.4:c.2607C>A	p.Tyr869Ter	p.Y869*	ENST00000373198	NM_133170.3	869	taC/taA																																																																														
SMO	6608	MSKCC	GRCh37	7	128849225	128849225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	84	469	0	ENST00000249373.3:c.1453C>G	p.Arg485Gly	p.R485G	ENST00000249373	NM_005631.4	485	Cgg/Ggg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132871	152132871	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0037863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	34	511	0	ENST00000262189.6:c.1A>T	p.Met1?	p.M1?	ENST00000262189	NM_170606.2	1	Atg/Ttg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380282	25380282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	62	334	0	ENST00000256078.4:c.176C>G	p.Ala59Gly	p.A59G	ENST00000256078	NM_033360.2	59	gCa/gGa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528582	89528582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	49	198	0	ENST00000336596.2:c.2882C>A	p.Pro961Gln	p.P961Q	ENST00000336596	NM_005233.5	961	cCa/cAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953011	2953011	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1172378918		P-0037879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	43	647	1	ENST00000396946.4:c.2929G>A	p.Val977Met	p.V977M	ENST00000396946	NM_032415.4	977	Gtg/Atg																																																																														
MGA	23269	MSKCC	GRCh37	15	42005607	42005607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	43	321	0	ENST00000219905.7:c.3343G>T	p.Gly1115Ter	p.G1115*	ENST00000219905	NM_001164273.1	1115	Gga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29548866	29548866	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0037879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	53	443	0	ENST00000358273.4:c.1642-2A>T		p.X548_splice	ENST00000358273	NM_001042492.2	548																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	13	393	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0038019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	96	545	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0038019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	56	740	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0038183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	6	532	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	102	513	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289922	15289922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1358	92	860	0	ENST00000263388.2:c.3632C>T	p.Ser1211Leu	p.S1211L	ENST00000263388	NM_000435.2	1211	tCa/tTa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572549	64572549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	75	738	0	ENST00000337652.1:c.1322G>T	p.Trp441Leu	p.W441L	ENST00000337652	NM_130803.2	441	tGg/tTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044970	47044970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	164	877	0	ENST00000329236.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000329236	NM_001204466.1	688	Cgc/Tgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933061	39933062	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	73	849	1	ENST00000378444.4:c.1537_1538delinsCT	p.Gly513Leu	p.G513L	ENST00000378444	NM_001123385.1	513	GGg/CTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243215	123243215	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	119	907	0	ENST00000358487.5:c.2298T>G	p.Asn766Lys	p.N766K	ENST00000358487	NM_000141.4	766	aaT/aaG																																																																														
B2M	567	MSKCC	GRCh37	15	45007750	45007796	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCT	TTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCT	-			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	39	480	0	ENST00000558401.1:c.199_245del	p.Glu67LeufsTer7	p.E67Lfs*7	ENST00000558401	NM_004048.2	66	aTTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCT/a																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858238	9858238	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs370107080		P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	121	486	0	ENST00000330684.3:c.3163G>C	p.Glu1055Gln	p.E1055Q	ENST00000330684	NM_001134407.1	1055	Gag/Cag																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14014077	14014077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1431	79	685	0	ENST00000311895.7:c.55G>A	p.Glu19Lys	p.E19K	ENST00000311895	NM_005236.2	19	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971339	15971339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	135	713	0	ENST00000268712.3:c.4610G>T	p.Gly1537Val	p.G1537V	ENST00000268712	NM_006311.3	1537	gGg/gTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37873571	37873571	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	71	660	0	ENST00000269571.5:c.1738-2del		p.X580_splice	ENST00000269571		580																																																																															
CUL3	8452	MSKCC	GRCh37	2	225376078	225376078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	50	489	0	ENST00000264414.4:c.876G>C	p.Lys292Asn	p.K292N	ENST00000264414	NM_003590.4	292	aaG/aaC																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636706	176636706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	83	526	1	ENST00000439151.2:c.1306G>T	p.Gly436Trp	p.G436W	ENST00000439151	NM_022455.4	436	Ggg/Tgg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729877	41729877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	88	592	0	ENST00000242208.4:c.652T>A	p.Trp218Arg	p.W218R	ENST00000242208	NM_002192.2	218	Tgg/Agg																																																																														
MET	4233	MSKCC	GRCh37	7	116415099	116415099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	187	660	0	ENST00000397752.3:c.3193G>T	p.Ala1065Ser	p.A1065S	ENST00000397752	NM_000245.2	1065	Gca/Tca																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923600	39923600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	60	716	0	ENST00000378444.4:c.3491G>T	p.Arg1164Leu	p.R1164L	ENST00000378444	NM_001123385.1	1164	cGa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039040-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	89	435	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PGR	5241	MSKCC	GRCh37	11	100912806	100912806	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs768389545		P-0039040-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	44	467	0	ENST00000325455.5:c.2516C>A	p.Thr839Asn	p.T839N	ENST00000325455	NM_001202474.3	839	aCc/aAc																																																																														
NPM1	4869	MSKCC	GRCh37	5	170827841	170827841	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0039040-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			116	10	227	0	ENST00000296930.5:c.583-2A>T		p.X195_splice	ENST00000296930	NM_002520.6	195																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0039079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1305	303	675	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0039079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	195	469	4	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0039079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	213	924	2	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0039359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	351	532	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	225	706	0	ENST00000269305.4:c.532C>G	p.His178Asp	p.H178D	ENST00000269305	NM_001126112.2	178	Cac/Gac																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647438	3647438	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1377493011		P-0039359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	149	814	0	ENST00000294008.3:c.1625T>C	p.Met542Thr	p.M542T	ENST00000294008	NM_032444.2	542	aTg/aCg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224483	39224484	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	163	659	0	ENST00000402219.2:c.2874dup	p.Ser959Ter	p.S959*	ENST00000402219	NM_005633.3	958	-/T																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285189	198285189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	84	525	0	ENST00000335508.6:c.378G>A	p.Met126Ile	p.M126I	ENST00000335508	NM_012433.2	126	atG/atA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	254	435	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	634	825	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	172	406	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs879253911		P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	319	660	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106593	27106593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	334	714	0	ENST00000324856.7:c.6207del	p.Gln2070SerfsTer65	p.Q2070Sfs*65	ENST00000324856	NM_006015.4	2068	tcG/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578223	7578223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	639	684	0	ENST00000269305.4:c.626G>C	p.Arg209Thr	p.R209T	ENST00000269305	NM_001126112.2	209	aGa/aCa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120611957	120611957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	27	65	0	ENST00000256646.2:c.64C>A	p.Pro22Thr	p.P22T	ENST00000256646	NM_024408.3	22	Ccc/Acc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118366466	118366466	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	276	516	0	ENST00000534358.1:c.5415T>A	p.Tyr1805Ter	p.Y1805*	ENST00000534358	NM_005933.3	1805	taT/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	656	790	0	ENST00000269305.4:c.880G>C	p.Glu294Gln	p.E294Q	ENST00000269305	NM_001126112.2	294	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577599	7577599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	432	543	1	ENST00000269305.4:c.682G>A	p.Asp228Asn	p.D228N	ENST00000269305	NM_001126112.2	228	Gac/Aac																																																																														
AURKB	9212	MSKCC	GRCh37	17	8111088	8111089	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAAGTG			P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1364	115	727	0	ENST00000585124.1:c.113_118dup	p.Ala38_Leu39dup	p.A38_L39dup	ENST00000585124	NM_004217.3	38	gtc/gCACTTGtc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45873460	45873460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	325	640	4	ENST00000391945.4:c.36C>A	p.Phe12Leu	p.F12L	ENST00000391945	NM_000400.3	12	ttC/ttA																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170872	99170872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	348	709	2	ENST00000074304.5:c.1501G>A	p.Asp501Asn	p.D501N	ENST00000074304	NM_001134224.1	501	Gac/Aac																																																																														
KDR	3791	MSKCC	GRCh37	4	55946315	55946315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	93	260	1	ENST00000263923.4:c.3864C>A	p.Ser1288Arg	p.S1288R	ENST00000263923	NM_002253.2	1288	agC/agA																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168942	32168942	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2111	166	770	1	ENST00000375023.3:c.4091C>G	p.Ala1364Gly	p.A1364G	ENST00000375023	NM_004557.3	1364	gCc/gGc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933111	39933111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	506	375	0	ENST00000378444.4:c.1488C>G	p.Ile496Met	p.I496M	ENST00000378444	NM_001123385.1	496	atC/atG																																																																														
ATRX	546	MSKCC	GRCh37	X	76972617	76972617	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	314	256	0	ENST00000373344.5:c.124C>G	p.Gln42Glu	p.Q42E	ENST00000373344	NM_000489.3	42	Caa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	35	526	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226561	2226561	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	60	798	1	ENST00000326181.6:c.1999G>T	p.Val667Phe	p.V667F	ENST00000326181	NM_032271.2	667	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	249	587	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578515	7578515	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	1131	789	0	ENST00000269305.4:c.415A>T	p.Lys139Ter	p.K139*	ENST00000269305	NM_001126112.2	139	Aag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445173	49445173	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs560581125		P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	78	414	26	ENST00000301067.7:c.2293G>C	p.Ala765Pro	p.A765P	ENST00000301067	NM_003482.3	765	Gct/Cct																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670544	134670544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	664	706	0	ENST00000398015.3:c.455G>T	p.Gly152Val	p.G152V	ENST00000398015	NM_004441.4	152	gGg/gTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245521	153245521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	183	381	0	ENST00000281708.4:c.1670G>T	p.Gly557Val	p.G557V	ENST00000281708	NM_033632.3	557	gGa/gTa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610496	10610496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	951	670	1	ENST00000171111.5:c.214C>T	p.Leu72Phe	p.L72F	ENST00000171111	NM_203500.1	72	Ctc/Ttc																																																																														
PGR	5241	MSKCC	GRCh37	11	100920740	100920740	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	588	422	0	ENST00000325455.5:c.2408A>T	p.Gln803Leu	p.Q803L	ENST00000325455	NM_001202474.3	803	cAg/cTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993350	72993350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	573	709	0	ENST00000268489.5:c.695G>T	p.Arg232Leu	p.R232L	ENST00000268489	NM_006885.3	232	cGc/cTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15989627	15989627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	422	332	0	ENST00000268712.3:c.3146C>T	p.Pro1049Leu	p.P1049L	ENST00000268712	NM_006311.3	1049	cCa/cTa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17120390	17120390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	59	439	0	ENST00000285071.4:c.1169T>C	p.Val390Ala	p.V390A	ENST00000285071	NM_144997.5	390	gTa/gCa																																																																														
STK11	6794	MSKCC	GRCh37	19	1222991	1222993	+	frameshift_variant	Frame_Shift_Del	DEL	CGG	CGG	TT			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	529	572	1	ENST00000326873.7:c.928_930delinsTT	p.Arg310LeufsTer26	p.R310Lfs*26	ENST00000326873	NM_000455.4	310	CGG/TT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210945	36210945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	344	786	1	ENST00000222270.7:c.696G>T	p.Arg232Ser	p.R232S	ENST00000222270	NM_014727.1	232	agG/agT																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99154409	99154409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	290	585	0	ENST00000074304.5:c.551C>A	p.Thr184Asn	p.T184N	ENST00000074304	NM_001134224.1	184	aCc/aAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127556	55127556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	285	273	0	ENST00000257290.5:c.344G>T	p.Arg115Met	p.R115M	ENST00000257290	NM_006206.4	115	aGg/aTg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55153603	55153603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	378	413	0	ENST00000257290.5:c.2569C>A	p.Leu857Met	p.L857M	ENST00000257290	NM_006206.4	857	Ctg/Atg																																																																														
KDR	3791	MSKCC	GRCh37	4	55981479	55981479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	188	393	0	ENST00000263923.4:c.458C>G	p.Ser153Cys	p.S153C	ENST00000263923	NM_002253.2	153	tCc/tGc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467692	66467692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	291	311	0	ENST00000273854.3:c.577A>G	p.Met193Val	p.M193V	ENST00000273854	NM_004439.5	193	Atg/Gtg																																																																														
MET	4233	MSKCC	GRCh37	7	116371837	116371853	+	frameshift_variant	Frame_Shift_Del	DEL	TAACATCTATATCCACC	TAACATCTATATCCACC	-			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	184	431	0	ENST00000397752.3:c.1317_1333del	p.Leu439PhefsTer3	p.L439Ffs*3	ENST00000397752	NM_000245.2	439	tTAACATCTATATCCACC/t																																																																														
PREX2	80243	MSKCC	GRCh37	8	69039612	69039612	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	466	337	0	ENST00000288368.4:c.3725-1G>T		p.X1242_splice	ENST00000288368	NM_024870.2	1242																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741686	145741686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1367	329	663	0	ENST00000428558.2:c.817G>C	p.Ala273Pro	p.A273P	ENST00000428558	NM_004260.3	273	Gca/Cca																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741693	145741693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1361	328	690	0	ENST00000428558.2:c.810G>T	p.Glu270Asp	p.E270D	ENST00000428558	NM_004260.3	270	gaG/gaT																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70967581	70967596	+	frameshift_variant	Frame_Shift_Del	DEL	CGCATGTGTTTGTTTA	CGCATGTGTTTGTTTA	-			P-0039436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	89	535	0	ENST00000276594.2:c.1427_1442del	p.Leu476GlnfsTer85	p.L476Qfs*85	ENST00000276594	NM_024504.3	476	cTAAACAAACACATGCGa/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0039544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	48	651	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374366	31374366	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757657111		P-0039604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	287	641	0	ENST00000328111.2:c.365G>A	p.Arg122His	p.R122H	ENST00000328111	NM_006892.3	122	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0039604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	137	263	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575168	48575168	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0039604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	146	264	0	ENST00000342988.3:c.362T>G	p.Leu121Ter	p.L121*	ENST00000342988	NM_005359.5	121	tTa/tGa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467978	50467978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	239	544	0	ENST00000331340.3:c.1213G>A	p.Glu405Lys	p.E405K	ENST00000331340	NM_006060.4	405	Gag/Aag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222222	53222222	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782534108		P-0039604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	181	959	0	ENST00000375401.3:c.4610C>T	p.Ser1537Leu	p.S1537L	ENST00000375401	NM_004187.3	1537	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	524	519	2	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	460	479	2	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																														
KDR	3791	MSKCC	GRCh37	4	55984911	55984911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	342	343	2	ENST00000263923.4:c.218G>T	p.Arg73Met	p.R73M	ENST00000263923	NM_002253.2	73	aGg/aTg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115266618	115266618	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	303	485	1	ENST00000438362.2:c.1897G>T	p.Gly633Cys	p.G633C	ENST00000438362	NM_001242891.1	633	Ggc/Tgc																																																																														
IL10	3586	MSKCC	GRCh37	1	206944283	206944283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	359	366	3	ENST00000423557.1:c.347T>C	p.Leu116Pro	p.L116P	ENST00000423557	NM_000572.2	116	cTg/cCg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111886048	111886048	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	393	487	4	ENST00000341259.2:c.1670T>A	p.Met557Lys	p.M557K	ENST00000341259	NM_005475.2	557	aTg/aAg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514682	103514682	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	246	286	0	ENST00000355739.4:c.1183C>G	p.Leu395Val	p.L395V	ENST00000355739	NM_000123.3	395	Ctt/Gtt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89851263	89851263	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	365	408	1	ENST00000389301.3:c.1469A>T	p.Gln490Leu	p.Q490L	ENST00000389301	NM_000135.2	490	cAg/cTg																																																																														
BCL2	596	MSKCC	GRCh37	18	60985691	60985691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	54	61	0	ENST00000333681.4:c.209C>G	p.Ser70Trp	p.S70W	ENST00000333681		70	tCg/tGg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530084	212530084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	159	218	3	ENST00000342788.4:c.1835G>T	p.Arg612Leu	p.R612L	ENST00000342788	NM_005235.2	612	cGg/cTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967236	134967236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	402	543	3	ENST00000398015.3:c.2575G>T	p.Asp859Tyr	p.D859Y	ENST00000398015	NM_004441.4	859	Gac/Tac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201844	66201844	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	186	306	0	ENST00000273854.3:c.2659-1G>C		p.X887_splice	ENST00000273854	NM_004439.5	887																																																																															
SDHA	6389	MSKCC	GRCh37	5	235444	235444	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs528628545		P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	568	658	6	ENST00000264932.6:c.1250A>G	p.Tyr417Cys	p.Y417C	ENST00000264932	NM_004168.2	417	tAc/tGc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2966423	2966423	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	447	568	4	ENST00000396946.4:c.1757C>T	p.Thr586Ile	p.T586I	ENST00000396946	NM_032415.4	586	aCa/aTa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741403	145741403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766344677		P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1272	350	857	2	ENST00000428558.2:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000428558	NM_004260.3	367	cGg/cAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391886	139391893	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGCGAT	TGTGCGAT	-			P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	687	801	13	ENST00000277541.6:c.6298_6305del	p.Ile2100GlyfsTer165	p.I2100Gfs*165	ENST00000277541	NM_017617.3	2100	ATCGCACAg/g																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321390	1321390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	255	382	5	ENST00000381566.1:c.365C>A	p.Pro122Gln	p.P122Q	ENST00000381566		122	cCg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	65	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	91	787	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044892	47044892	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	124	1013	1	ENST00000329236.7:c.1984G>T	p.Glu662Ter	p.E662*	ENST00000329236	NM_001204466.1	662	Gag/Tag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177458	56177458	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs189290632		P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	32	344	0	ENST00000399503.3:c.2431A>G	p.Met811Val	p.M811V	ENST00000399503	NM_005921.1	811	Atg/Gtg																																																																														
NUF2	83540	MSKCC	GRCh37	1	163306568	163306568	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	36	427	0	ENST00000271452.3:c.365G>C	p.Ser122Thr	p.S122T	ENST00000271452	NM_145697.2	122	aGt/aCt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426991	49426991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1002386392		P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	134	666	0	ENST00000301067.7:c.11497C>T	p.Arg3833Trp	p.R3833W	ENST00000301067	NM_003482.3	3833	Cgg/Tgg																																																																														
KIT	3815	MSKCC	GRCh37	4	55602936	55602936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	28	384	0	ENST00000288135.5:c.2646G>A	p.Met882Ile	p.M882I	ENST00000288135	NM_000222.2	882	atG/atA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	87	863	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0039812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	84	431	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0039812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	171	972	7	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187191	11187191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	129	593	9	ENST00000361445.4:c.6227G>T	p.Arg2076Leu	p.R2076L	ENST00000361445	NM_004958.3	2076	cGa/cTa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604762	48604763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0039812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	82	491	0	ENST00000342988.3:c.1585_1586dup	p.Leu529PhefsTer9	p.L529Ffs*9	ENST00000342988	NM_005359.5	528	-/TT																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134849	41134849	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1319703616		P-0039812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	69	466	1	ENST00000379561.5:c.779A>G	p.Asn260Ser	p.N260S	ENST00000379561	NM_002015.3	260	aAc/aGc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348200	348200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1344	159	1027	1	ENST00000262320.3:c.1306C>T	p.His436Tyr	p.H436Y	ENST00000262320	NM_003502.3	436	Cac/Tac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779764	3779765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAC			P-0039812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	116	990	1	ENST00000262367.5:c.5280_5283dup	p.Lys1762ValfsTer205	p.K1762Vfs*205	ENST00000262367	NM_004380.2	1761	-/GTCA																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602304	10602304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	153	938	4	ENST00000171111.5:c.1274T>C	p.Ile425Thr	p.I425T	ENST00000171111	NM_203500.1	425	aTc/aCc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806221	1806221	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	149	902	0	ENST00000260795.2:c.1240A>T	p.Ile414Phe	p.I414F	ENST00000260795		414	Atc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	92	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	28	183	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73345240	73345240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	54	286	0	ENST00000377767.4:c.1649C>T	p.Ser550Phe	p.S550F	ENST00000377767	NM_014953.3	550	tCc/tTc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39937175	39937175	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	88	552	0	ENST00000378444.4:c.8C>G	p.Ser3Ter	p.S3*	ENST00000378444	NM_001123385.1	3	tCa/tGa																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981761	101981761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	138	399	0	ENST00000282441.5:c.182C>G	p.Ser61Trp	p.S61W	ENST00000282441	NM_001130145.2	61	tCg/tGg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056210	26056210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	128	324	0	ENST00000343677.2:c.447G>C	p.Lys149Asn	p.K149N	ENST00000343677	NM_005319.3	149	aaG/aaC																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5225783	5225783	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1159864455		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	103	625	1	ENST00000357368.4:c.2449G>A	p.Asp817Asn	p.D817N	ENST00000357368	NM_002850.3	817	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32183005	32183005	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	96	396	0	ENST00000375023.3:c.2019G>C	p.Gln673His	p.Q673H	ENST00000375023	NM_004557.3	673	caG/caC																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292580	15292580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867505691		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	105	661	2	ENST00000263388.2:c.2599G>A	p.Gly867Ser	p.G867S	ENST00000263388	NM_000435.2	867	Ggc/Agc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913409		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	52	237	0	ENST00000349496.5:c.134C>G	p.Ser45Cys	p.S45C	ENST00000349496	NM_001904.3	45	tCt/tGt																																																																														
AXL	558	MSKCC	GRCh37	19	41762430	41762430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781426924		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	39	523	0	ENST00000301178.4:c.2110C>T	p.Arg704Cys	p.R704C	ENST00000301178	NM_021913.4	704	Cgc/Tgc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946463	2946463	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777458922		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	64	466	0	ENST00000396946.4:c.3274C>T	p.Arg1092Ter	p.R1092*	ENST00000396946	NM_032415.4	1092	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034491	47034491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	70	529	0	ENST00000329236.7:c.345G>T	p.Gln115His	p.Q115H	ENST00000329236	NM_001204466.1	115	caG/caT																																																																														
NUF2	83540	MSKCC	GRCh37	1	163315571	163315571	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	37	233	0	ENST00000271452.3:c.911C>G	p.Ser304Ter	p.S304*	ENST00000271452	NM_145697.2	304	tCa/tGa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099508	157099508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	72	218	0	ENST00000346085.5:c.445C>A	p.Gln149Lys	p.Q149K	ENST00000346085	NM_020732.3	149	Cag/Aag																																																																														
WT1	7490	MSKCC	GRCh37	11	32414268	32414268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	100	336	0	ENST00000332351.3:c.1283G>C	p.Cys428Ser	p.C428S	ENST00000332351	NM_024426.4	428	tGt/tCt																																																																														
POLE	5426	MSKCC	GRCh37	12	133245268	133245268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	94	577	0	ENST00000320574.5:c.1979G>C	p.Gly660Ala	p.G660A	ENST00000320574	NM_006231.2	660	gGa/gCa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258672	16258672	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	65	424	0	ENST00000375759.3:c.5937G>C	p.Glu1979Asp	p.E1979D	ENST00000375759	NM_015001.2	1979	gaG/gaC																																																																														
ID3	3399	MSKCC	GRCh37	1	23885815	23885815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	67	445	0	ENST00000374561.5:c.103G>C	p.Glu35Gln	p.E35Q	ENST00000374561	NM_002167.4	35	Gag/Cag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458246	120458246	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	96	532	0	ENST00000256646.2:c.7099C>G	p.Gln2367Glu	p.Q2367E	ENST00000256646	NM_024408.3	2367	Cag/Gag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458732	120458732	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	82	422	0	ENST00000256646.2:c.6613C>G	p.His2205Asp	p.H2205D	ENST00000256646	NM_024408.3	2205	Cat/Gat																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459131	120459131	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	88	505	0	ENST00000256646.2:c.6214C>G	p.Pro2072Ala	p.P2072A	ENST00000256646	NM_024408.3	2072	Cca/Gca																																																																														
IL10	3586	MSKCC	GRCh37	1	206944390	206944390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	46	307	0	ENST00000423557.1:c.240C>G	p.Cys80Trp	p.C80W	ENST00000423557	NM_000572.2	80	tgC/tgG																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724749	112724749	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1050720476		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	75	290	0	ENST00000369452.4:c.633C>G	p.Ile211Met	p.I211M	ENST00000369452	NM_007373.3	211	atC/atG																																																																														
ATM	472	MSKCC	GRCh37	11	108159769	108159769	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	40	248	0	ENST00000278616.4:c.4175A>T	p.Tyr1392Phe	p.Y1392F	ENST00000278616	NM_000051.3	1392	tAt/tTt																																																																														
MDM2	4193	MSKCC	GRCh37	12	69229743	69229743	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	31	210	0	ENST00000462284.1:c.819A>T	p.Glu273Asp	p.E273D	ENST00000462284	NM_002392.5	273	gaA/gaT																																																																														
CBFB	865	MSKCC	GRCh37	16	67063327	67063327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	27	211	0	ENST00000412916.2:c.17C>T	p.Pro6Leu	p.P6L	ENST00000412916		6	cCc/cTc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17117021	17117021	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	113	480	0	ENST00000285071.4:c.1688C>G	p.Ser563Ter	p.S563*	ENST00000285071	NM_144997.5	563	tCa/tGa																																																																														
NF1	4763	MSKCC	GRCh37	17	29665721	29665721	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	35	174	0	ENST00000358273.4:c.6820-1G>T		p.X2274_splice	ENST00000358273	NM_001042492.2	2274																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618478	37618478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	57	412	0	ENST00000447079.4:c.154G>C	p.Asp52His	p.D52H	ENST00000447079	NM_015083.1	52	Gac/Cac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271648	15271648	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	131	760	0	ENST00000263388.2:c.6791C>G	p.Ser2264Ter	p.S2264*	ENST00000263388	NM_000435.2	2264	tCa/tGa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272291	15272291	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	95	516	0	ENST00000263388.2:c.6148C>G	p.Leu2050Val	p.L2050V	ENST00000263388	NM_000435.2	2050	Ctc/Gtc																																																																														
ALK	238	MSKCC	GRCh37	2	29462623	29462623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	55	587	0	ENST00000389048.3:c.2278C>A	p.Leu760Met	p.L760M	ENST00000389048	NM_004304.4	760	Ctg/Atg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736158	204736159	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	33	256	0	ENST00000302823.3:c.519dup	p.Leu174ValfsTer5	p.L174Vfs*5	ENST00000302823	NM_005214.4	172	tcg/tcGg																																																																														
PAK7	0	MSKCC	GRCh37	20	9546612	9546612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	70	365	0	ENST00000353224.5:c.1410C>A	p.His470Gln	p.H470Q	ENST00000353224	NM_177990.2	470	caC/caA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164031	47164031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	18	219	0	ENST00000409792.3:c.2095G>C	p.Asp699His	p.D699H	ENST00000409792	NM_014159.6	699	Gat/Cat																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169991111	169991111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	259	0	ENST00000295797.4:c.629C>G	p.Ser210Cys	p.S210C	ENST00000295797	NM_002740.5	210	tCt/tGt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152036	55152036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	56	384	1	ENST00000257290.5:c.2468A>G	p.Asn823Ser	p.N823S	ENST00000257290	NM_006206.4	823	aAc/aGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249534	153249534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	62	312	0	ENST00000281708.4:c.1244G>C	p.Arg415Thr	p.R415T	ENST00000281708	NM_033632.3	415	aGa/aCa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026415	6026415	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs778531080		P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	48	237	0	ENST00000265849.7:c.1981G>T	p.Glu661Ter	p.E661*	ENST00000265849	NM_000535.5	661	Gaa/Taa																																																																														
CDK6	1021	MSKCC	GRCh37	7	92247433	92247433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	85	239	0	ENST00000265734.4:c.787G>C	p.Glu263Gln	p.E263Q	ENST00000265734	NM_001259.6	263	Gag/Cag																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346058	152346058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	149	423	0	ENST00000359321.1:c.512C>G	p.Ser171Cys	p.S171C	ENST00000359321	NM_005431.1	171	tCt/tGt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285513	38285513	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	76	479	0	ENST00000425967.3:c.640A>T	p.Thr214Ser	p.T214S	ENST00000425967	NM_001174067.1	214	Acc/Tcc																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139565442	139565442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	108	560	0	ENST00000308874.7:c.612G>C	p.Gln204His	p.Q204H	ENST00000308874		204	caG/caC																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1331512	1331512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	96	378	0	ENST00000381566.1:c.16C>G	p.Leu6Val	p.L6V	ENST00000381566		6	Ctg/Gtg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916546	39916546	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	58	503	0	ENST00000378444.4:c.4457A>G	p.Lys1486Arg	p.K1486R	ENST00000378444	NM_001123385.1	1486	aAg/aGg																																																																														
MED12	9968	MSKCC	GRCh37	X	70361799	70361799	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	108	540	1	ENST00000374080.3:c.6475C>T	p.Gln2159Ter	p.Q2159*	ENST00000374080		2159	Caa/Taa																																																																														
BTK	695	MSKCC	GRCh37	X	100615638	100615638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	76	419	0	ENST00000308731.7:c.694G>T	p.Asp232Tyr	p.D232Y	ENST00000308731	NM_000061.2	232	Gat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	75	239	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105642	11105642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			697	47	426	0	ENST00000344626.4:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000344626	NM_003072.3	520	Gag/Tag																																																																														
RET	5979	MSKCC	GRCh37	10	43610035	43610035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			879	191	532	0	ENST00000355710.3:c.1987T>C	p.Phe663Leu	p.F663L	ENST00000355710	NM_020975.4	663	Ttt/Ctt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671594	67671594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	72	204	0	ENST00000264010.4:c.2003C>T	p.Thr668Ile	p.T668I	ENST00000264010	NM_006565.3	668	aCa/aTa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244808	41244808	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs80357419		P-0039904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	134	400	0	ENST00000357654.3:c.2740G>T	p.Glu914Ter	p.E914*	ENST00000357654	NM_007294.3	914	Gag/Tag																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56770057	56770057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	106	420	0	ENST00000337432.4:c.53C>A	p.Pro18Gln	p.P18Q	ENST00000337432	NM_058216.2	18	cCg/cAg																																																																														
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			633	157	593	0	ENST00000326873.7:c.709G>A	p.Asp237Asn	p.D237N	ENST00000326873	NM_000455.4	237	Gac/Aac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610109	10610109	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039904-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	159	492	0	ENST00000171111.5:c.601C>T	p.Gln201Ter	p.Q201*	ENST00000171111	NM_203500.1	201	Cag/Tag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330610	65330611	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TTTTTTCCGCTTCAGTTTAT			P-0039937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	55	405	0	ENST00000342505.4:c.1016_1035dup	p.Leu346IlefsTer3	p.L346Ifs*3	ENST00000342505	NM_002227.2	345	-/ATAAACTGAAGCGGAAAAAA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32921033	32921033	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs28897743		P-0039937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	49	388	0	ENST00000380152.3:c.7007G>A	p.Arg2336His	p.R2336H	ENST00000380152		2336	cGc/cAc																																																																														
CDH1	999	MSKCC	GRCh37	16	68853251	68853251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780115		P-0039937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	83	629	0	ENST00000261769.5:c.1634G>A	p.Arg545Gln	p.R545Q	ENST00000261769	NM_004360.3	545	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0039937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	201	687	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	8	343	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112174004	112174004	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	41	262	0	ENST00000257430.4:c.2713A>C	p.Ser905Arg	p.S905R	ENST00000257430	NM_000038.5	905	Agt/Cgt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509111	106509111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	68	809	0	ENST00000359195.3:c.1105G>A	p.Asp369Asn	p.D369N	ENST00000359195	NM_002649.2	369	Gat/Aat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923133	39923133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	122	822	0	ENST00000378444.4:c.3575C>T	p.Thr1192Ile	p.T1192I	ENST00000378444	NM_001123385.1	1192	aCc/aTc																																																																														
RET	5979	MSKCC	GRCh37	10	43606899	43606909	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTGGAGGGG	CAGTGGAGGGG	-			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	293	1049	0	ENST00000355710.3:c.1508_1518del	p.Thr503IlefsTer23	p.T503Ifs*23	ENST00000355710	NM_020975.4	503	aCAGTGGAGGGG/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7578291	7578303	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TAAGAGCAATCAG	TAAGAGCAATCAG	-			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	258	746	0	ENST00000269305.4:c.560-14_560-2del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78519485	78519485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	121	597	0	ENST00000306801.3:c.56C>T	p.Ala19Val	p.A19V	ENST00000306801	NM_020761.2	19	gCt/gTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105585	11105586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	200	844	0	ENST00000344626.4:c.1503dup	p.Lys502GlnfsTer32	p.K502Qfs*32	ENST00000344626	NM_003072.3	501	acc/aCcc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332847	152332847	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	49	562	0	ENST00000206249.3:c.1153G>T	p.Glu385Ter	p.E385*	ENST00000206249	NM_000125.3	385	Gag/Tag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs756897237		P-0039945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	10	93	0	ENST00000331920.6:c.49_51del	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	23	700	0	ENST00000269305.4:c.568C>T	p.Pro190Ser	p.P190S	ENST00000269305	NM_001126112.2	190	Cct/Tct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0040059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	891	490	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0040059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	24	571	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
ATM	472	MSKCC	GRCh37	11	108115573	108115573	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	65	326	0	ENST00000278616.4:c.721A>T	p.Lys241Ter	p.K241*	ENST00000278616	NM_000051.3	241	Aag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0040060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	74	614	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0040060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	103	613	2	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573136	64573136	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767595183		P-0040060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	34	443	0	ENST00000337652.1:c.1171G>A	p.Gly391Ser	p.G391S	ENST00000337652	NM_130803.2	391	Ggc/Agc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40379630	40379630	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	56	666	0	ENST00000293328.3:c.202C>G	p.Leu68Val	p.L68V	ENST00000293328	NM_012448.3	68	Ctg/Gtg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591921	48591921	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	53	416	0	ENST00000342988.3:c.1087del	p.Cys363ValfsTer21	p.C363Vfs*21	ENST00000342988	NM_005359.5	362	Ttt/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	121	465	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913324		P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	220	743	1	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602334	10602334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	230	777	0	ENST00000171111.5:c.1244G>T	p.Arg415Leu	p.R415L	ENST00000171111	NM_203500.1	415	cGc/cTc																																																																														
RET	5979	MSKCC	GRCh37	10	43615093	43615093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	260	728	0	ENST00000355710.3:c.2507G>T	p.Ser836Ile	p.S836I	ENST00000355710	NM_020975.4	836	aGc/aTc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202473	67202487	+	inframe_deletion	In_Frame_Del	DEL	TCCCCTTTTGAGGGG	TCCCCTTTTGAGGGG	-			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	88	750	0	ENST00000312629.5:c.1283_1297del	p.Ser428_Gly432del	p.S428_G432del	ENST00000312629	NM_003952.2	428	TCCCCTTTTGAGGGG/-																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687172	37687172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	252	607	0	ENST00000447079.4:c.4076G>T	p.Gly1359Val	p.G1359V	ENST00000447079	NM_015083.1	1359	gGt/gTt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371574	225371575	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CT			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	35	376	0	ENST00000264414.4:c.1028_1029dup	p.Gly344ArgfsTer6	p.G344Rfs*6	ENST00000264414	NM_003590.4	343	-/AG																																																																														
LYN	4067	MSKCC	GRCh37	8	56866542	56866542	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	123	682	0	ENST00000519728.1:c.789G>T	p.Met263Ile	p.M263I	ENST00000519728	NM_002350.3	263	atG/atT																																																																														
PREX2	80243	MSKCC	GRCh37	8	68939459	68939459	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	26	362	0	ENST00000288368.4:c.444C>A	p.Asn148Lys	p.N148K	ENST00000288368	NM_024870.2	148	aaC/aaA																																																																														
TEK	7010	MSKCC	GRCh37	9	27169566	27169566	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	199	646	0	ENST00000380036.4:c.567C>A	p.Tyr189Ter	p.Y189*	ENST00000380036	NM_000459.3	189	taC/taA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0040135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	227	459	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0040135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	163	605	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249022	55249022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567477136		P-0040163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	110	543	0	ENST00000275493.2:c.2320G>A	p.Val774Met	p.V774M	ENST00000275493	NM_005228.3	774	Gtg/Atg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0040163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	110	503	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	18	270	0	ENST00000320574.5:c.52G>C	p.Glu18Gln	p.E18Q	ENST00000320574	NM_006231.2	18	Gag/Cag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563094	21563094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	43	801	0	ENST00000382592.4:c.825C>G	p.Phe275Leu	p.F275L	ENST00000382592	NM_014572.2	275	ttC/ttG																																																																														
CBFB	865	MSKCC	GRCh37	16	67063657	67063657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	44	349	0	ENST00000412916.2:c.106C>G	p.Pro36Ala	p.P36A	ENST00000412916		36	Ccc/Gcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	71	358	0				ENST00000310581	NM_198253.2																																																																																
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199469669		P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	224	234	0	ENST00000374080.3:c.130G>T	p.Gly44Cys	p.G44C	ENST00000374080		44	Ggt/Tgt																																																																														
RHOA	387	MSKCC	GRCh37	3	49412982	49412982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	328	507	0	ENST00000418115.1:c.41G>A	p.Gly14Glu	p.G14E	ENST00000418115	NM_001664.2	14	gGa/gAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618622	37618622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	63	453	0	ENST00000447079.4:c.298C>T	p.Arg100Cys	p.R100C	ENST00000447079	NM_015083.1	100	Cgt/Tgt																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281106	49281106	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	232	559	0	ENST00000282018.3:c.153G>A	p.Trp51Ter	p.W51*	ENST00000282018	NM_020377.2	51	tgG/tgA																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244137	46244137	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	62	373	0	ENST00000334344.6:c.2231T>G	p.Val744Gly	p.V744G	ENST00000334344	NM_152641.2	744	gTt/gGt																																																																														
RB1	5925	MSKCC	GRCh37	13	48919281	48919281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs587778870		P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	92	153	0	ENST00000267163.4:c.446C>G	p.Ser149Ter	p.S149*	ENST00000267163	NM_000321.2	149	tCa/tGa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983113	201983127	+	inframe_deletion	In_Frame_Del	DEL	ACAGCAACATGACCT	ACAGCAACATGACCT	-			P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	246	545	0	ENST00000359651.3:c.964_978del	p.Ser322_Tyr326del	p.S322_Y326del	ENST00000359651		321	aACAGCAACATGACCTac/aac																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984406	201984407	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCAAGCGG			P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	404	521	0	ENST00000359651.3:c.1072_1079dup	p.Trp361GlnfsTer89	p.W361Qfs*89	ENST00000359651		357	-/TCAAGCGG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435120	49435136	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTCAGGAACCCGTCC	GCTTCAGGAACCCGTCC	-			P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	150	495	0	ENST00000301067.7:c.6417_6433del	p.Asp2140AlafsTer9	p.D2140Afs*9	ENST00000301067	NM_003482.3	2139	gcGGACGGGTTCCTGAAGCcg/gccg																																																																														
RB1	5925	MSKCC	GRCh37	13	48939033	48939033	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs1160807049		P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	108	167	0	ENST00000267163.4:c.865A>T	p.Lys289Ter	p.K289*	ENST00000267163	NM_000321.2	289	Aaa/Taa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250833	99250860	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAGCGCCTGGAGAACTGCACGGTGAT	TGAAGCGCCTGGAGAACTGCACGGTGAT	ATCAC			P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	132	428	1	ENST00000268035.6:c.137_164delinsATCAC	p.Leu46HisfsTer91	p.L46Hfs*91	ENST00000268035	NM_000875.3	46	cTGAAGCGCCTGGAGAACTGCACGGTGATc/cATCACc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81973562	81973562	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762731399		P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	107	441	1	ENST00000359376.3:c.3379C>A	p.Pro1127Thr	p.P1127T	ENST00000359376	NM_002661.3	1127	Cca/Aca																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129695	11129695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	170	442	0	ENST00000344626.4:c.2501A>G	p.Tyr834Cys	p.Y834C	ENST00000344626	NM_003072.3	834	tAc/tGc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872207	45872207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	201	547	0	ENST00000391945.4:c.227C>T	p.Thr76Ile	p.T76I	ENST00000391945	NM_000400.3	76	aCt/aTt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46609664	46609664	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	168	563	0	ENST00000263734.3:c.2388G>C	p.Lys796Asn	p.K796N	ENST00000263734	NM_001430.4	796	aaG/aaC																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46271023	46271023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	188	381	0	ENST00000371998.3:c.3147C>G	p.Asp1049Glu	p.D1049E	ENST00000371998		1049	gaC/gaG																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426844	6426845	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GC	GC	TT			P-0040185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	26	345	0	ENST00000356142.4:c.37_38delinsTT	p.Ala13Phe	p.A13F	ENST00000356142	NM_018890.3	13	GCt/TTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	360	1002	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100006	157100008	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-	rs1439004838		P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	23	207	0	ENST00000346085.5:c.954_956del	p.Gly319del	p.G319del	ENST00000346085	NM_020732.3	315	GGA/-																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	261	966	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860556	45860556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	444	1816	0	ENST00000391945.4:c.1451C>T	p.Thr484Met	p.T484M	ENST00000391945	NM_000400.3	484	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023903	27023904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	54	231	0	ENST00000324856.7:c.1015dup	p.Ala339GlyfsTer61	p.A339Gfs*61	ENST00000324856	NM_006015.4	337	tgg/tGgg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564540	86564560	+	inframe_deletion	In_Frame_Del	DEL	CTGCTGCTGGCGTAGCTGGTG	CTGCTGCTGGCGTAGCTGGTG	-	rs778745822		P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	228	1425	0	ENST00000274376.6:c.285_305del	p.Ala100_Ala106del	p.A100_A106del	ENST00000274376	NM_002890.2	91	aCTGCTGCTGGCGTAGCTGGTGct/act																																																																														
NF1	4763	MSKCC	GRCh37	17	29528097	29528097	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	228	783	3	ENST00000358273.4:c.1105C>T	p.Gln369Ter	p.Q369*	ENST00000358273	NM_001042492.2	369	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426253	49426253	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	401	1857	0	ENST00000301067.7:c.12235C>T	p.Gln4079Ter	p.Q4079*	ENST00000301067	NM_003482.3	4079	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057642	27057642	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	297	1203	0	ENST00000324856.7:c.1351-1G>A		p.X451_splice	ENST00000324856	NM_006015.4	451																																																																															
CDC73	79577	MSKCC	GRCh37	1	193202279	193202279	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	286	949	1	ENST00000367435.3:c.1311A>T	p.Gln437His	p.Q437H	ENST00000367435	NM_024529.4	437	caA/caT																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983026	201983026	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	505	1826	0	ENST00000359651.3:c.875T>G	p.Leu292Arg	p.L292R	ENST00000359651		292	cTc/cGc																																																																														
ATM	472	MSKCC	GRCh37	11	108199851	108199854	+	frameshift_variant	Frame_Shift_Del	DEL	ACCA	ACCA	-			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	166	682	0	ENST00000278616.4:c.7194_7197del	p.Tyr2398Ter	p.Y2398*	ENST00000278616	NM_000051.3	2398	tACCAa/ta																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375398	118375398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	266	885	0	ENST00000534358.1:c.8791C>T	p.Pro2931Ser	p.P2931S	ENST00000534358	NM_005933.3	2931	Cca/Tca																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988545	36988545	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	481	1713	0	ENST00000354822.5:c.108G>C	p.Lys36Asn	p.K36N	ENST00000354822	NM_001079668.2	36	aaG/aaC																																																																														
NF1	4763	MSKCC	GRCh37	17	29592354	29592354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	192	873	0	ENST00000358273.4:c.4832G>T	p.Arg1611Leu	p.R1611L	ENST00000358273	NM_001042492.2	1611	cGg/cTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41228540	41228540	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	390	1270	0	ENST00000357654.3:c.4449T>G	p.Ser1483Arg	p.S1483R	ENST00000357654	NM_007294.3	1483	agT/agG																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780595	56780595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	339	1181	0	ENST00000337432.4:c.610A>G	p.Ile204Val	p.I204V	ENST00000337432	NM_058216.2	204	Att/Gtt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023978	31023978	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs776864243		P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	390	1427	0	ENST00000375687.4:c.3463C>A	p.Leu1155Ile	p.L1155I	ENST00000375687	NM_015338.5	1155	Ctt/Att																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469812	157469831	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCAGGGCCCGGTATGGGT	GCCCAGGGCCCGGTATGGGT	-			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	399	1541	0	ENST00000346085.5:c.2606_2625del	p.Gly869AspfsTer66	p.G869Dfs*66	ENST00000346085	NM_020732.3	869	gGCCCAGGGCCCGGTATGGGT/g																																																																														
BRAF	673	MSKCC	GRCh37	7	140476815	140476815	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	359	1176	0	ENST00000288602.6:c.1591T>C	p.Trp531Arg	p.W531R	ENST00000288602	NM_004333.4	531	Tgg/Cgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845946	151845946	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	354	1438	0	ENST00000262189.6:c.13066A>T	p.Lys4356Ter	p.K4356*	ENST00000262189	NM_170606.2	4356	Aaa/Taa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209523	98209524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGG			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	313	1477	0	ENST00000331920.6:c.4011_4014dup	p.Trp1339ProfsTer66	p.W1339Pfs*66	ENST00000331920	NM_000264.3	1338	-/CCGC																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949995	44949995	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	293	860	0	ENST00000377967.4:c.3764G>C	p.Arg1255Pro	p.R1255P	ENST00000377967	NM_021140.2	1255	cGg/cCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	105	400	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604706	48604706	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	33	492	0	ENST00000342988.3:c.1528G>T	p.Gly510Ter	p.G510*	ENST00000342988	NM_005359.5	510	Gga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108143264	108143264	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	39	270	0	ENST00000278616.4:c.3083T>C	p.Leu1028Pro	p.L1028P	ENST00000278616	NM_000051.3	1028	cTa/cCa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195433	102195433	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	71	387	0	ENST00000263464.3:c.193A>T	p.Lys65Ter	p.K65*	ENST00000263464	NM_001165.4	65	Aaa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0040295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	69	397	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs876659384		P-0040295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	38	607	1	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363483	40363483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	83	586	0	ENST00000397332.2:c.746C>T	p.Pro249Leu	p.P249L	ENST00000397332	NM_001033082.2	249	cCt/cTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	240	506	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	129	256	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	236	503	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566507	41566507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	232	361	0	ENST00000263253.7:c.4384C>T	p.Arg1462Ter	p.R1462*	ENST00000263253	NM_001429.3	1462	Cga/Tga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287262	33287262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	327	550	0	ENST00000374542.5:c.1835C>T	p.Ser612Phe	p.S612F	ENST00000374542	NM_001141970.1	612	tCc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55224296	55224296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	284	468	0	ENST00000275493.2:c.1077C>G	p.Phe359Leu	p.F359L	ENST00000275493	NM_005228.3	359	ttC/ttG																																																																														
EP300	2033	MSKCC	GRCh37	22	41568504	41568504	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	245	347	0	ENST00000263253.7:c.4454A>T	p.Asp1485Val	p.D1485V	ENST00000263253	NM_001429.3	1485	gAt/gTt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287202	33287202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	325	562	0	ENST00000374542.5:c.1895C>G	p.Ser632Cys	p.S632C	ENST00000374542	NM_001141970.1	632	tCt/tGt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287268	33287268	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1489463159		P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	335	547	0	ENST00000374542.5:c.1829C>T	p.Ser610Phe	p.S610F	ENST00000374542	NM_001141970.1	610	tCt/tTt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984353	201984353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751139092		P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	425	605	0	ENST00000359651.3:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000359651		340	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133256620	133256620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	237	438	0	ENST00000320574.5:c.343G>C	p.Glu115Gln	p.E115Q	ENST00000320574	NM_006231.2	115	Gaa/Caa																																																																														
CDH1	999	MSKCC	GRCh37	16	68772252	68772252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	445	838	0	ENST00000261769.5:c.101C>G	p.Ala34Gly	p.A34G	ENST00000261769	NM_004360.3	34	gCc/gGc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983318	15983318	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	255	395	0	ENST00000268712.3:c.3461C>A	p.Ser1154Ter	p.S1154*	ENST00000268712	NM_006311.3	1154	tCa/tAa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374906	149374906	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1427667024		P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	372	501	1	ENST00000360632.3:c.188G>T	p.Arg63Leu	p.R63L	ENST00000360632	NM_015472.4	63	cGc/cTc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950185	38950185	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772137802		P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	293	440	0	ENST00000357387.3:c.3765G>A	p.Met1255Ile	p.M1255I	ENST00000357387	NM_152756.3	1255	atG/atA																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287967	33287967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	292	428	0	ENST00000374542.5:c.1286C>T	p.Ser429Phe	p.S429F	ENST00000374542	NM_001141970.1	429	tCt/tTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878180	151878180	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	315	537	0	ENST00000262189.6:c.6765A>C	p.Gln2255His	p.Q2255H	ENST00000262189	NM_170606.2	2255	caA/caC																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285474	38285474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	401	646	0	ENST00000425967.3:c.679G>C	p.Glu227Gln	p.E227Q	ENST00000425967	NM_001174067.1	227	Gaa/Caa																																																																														
FANCC	2176	MSKCC	GRCh37	9	97897696	97897696	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	543	400	0	ENST00000289081.3:c.775G>C	p.Glu259Gln	p.E259Q	ENST00000289081	NM_000136.2	259	Gaa/Caa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44733180	44733294	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGTTCGTGAGATTTCATGAAGATGGCGCCAGGACGAAGGCCCTACTGGGCAAGGTAAGGCAGCTGCGAGTCGGAGCGCGGACACCGTCTCCCTGGCCGGCGCCGCGCTCGCCCC	GGGTTCGTGAGATTTCATGAAGATGGCGCCAGGACGAAGGCCCTACTGGGCAAGGTAAGGCAGCTGCGAGTCGGAGCGCGGACACCGTCTCCCTGGCCGGCGCCGCGCTCGCCCC	-			P-0040313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	137	398	0	ENST00000377967.4:c.175_225+64del		p.X59_splice	ENST00000377967	NM_021140.2	59																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0040360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	183	380	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0040360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	112	432	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692835	89692835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	25	130	1	ENST00000371953.3:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000371953	NM_000314.4	107	Gat/Tat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0040370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	44	275	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88677046	88677047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	89	239	0	ENST00000372037.3:c.832dup	p.Tyr278LeufsTer9	p.Y278Lfs*9	ENST00000372037	NM_004329.2	277	-/T																																																																														
ATM	472	MSKCC	GRCh37	11	108173746	108173746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	32	153	0	ENST00000278616.4:c.5486C>T	p.Pro1829Leu	p.P1829L	ENST00000278616	NM_000051.3	1829	cCa/cTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040679	47040679	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	140	523	0	ENST00000329236.7:c.1080C>G	p.Tyr360Ter	p.Y360*	ENST00000329236	NM_001204466.1	360	taC/taG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249012	55249013	+	inframe_insertion	In_Frame_Ins	INS	-	-	AACCCCCAT			P-0040491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	35	625	0	ENST00000275493.2:c.2318_2319insTAACCCCCA	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	-/AACCCCCAT																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651513	52651513	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	66	260	0	ENST00000394830.3:c.1583A>T	p.Asn528Ile	p.N528I	ENST00000394830	NM_018313.4	528	aAt/aTt																																																																														
VHL	7428	MSKCC	GRCh37	3	10188252	10188252	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	112	407	0	ENST00000256474.2:c.397del	p.Thr133LeufsTer26	p.T133Lfs*26	ENST00000256474	NM_000551.3	132	cAa/ca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47144877	47144877	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	48	280	0	ENST00000409792.3:c.4876T>G	p.Phe1626Val	p.F1626V	ENST00000409792	NM_014159.6	1626	Ttc/Gtc																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149238747	149238747	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	186	459	1	ENST00000360632.3:c.1048A>T	p.Ile350Phe	p.I350F	ENST00000360632	NM_015472.4	350	Atc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0040571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	61	703	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743520	46743520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141523334		P-0040571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	48	572	0	ENST00000371975.4:c.1901G>A	p.Arg634His	p.R634H	ENST00000371975	NM_003579.3	634	cGt/cAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356406	66356406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	36	422	0	ENST00000273854.3:c.1091C>A	p.Ala364Asp	p.A364D	ENST00000273854	NM_004439.5	364	gCc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0040576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	236	694	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29576091	29576091	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1131691087		P-0040576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	214	562	0	ENST00000358273.4:c.4064C>G	p.Ser1355Ter	p.S1355*	ENST00000358273	NM_001042492.2	1355	tCa/tGa																																																																														
NF1	4763	MSKCC	GRCh37	17	29663681	29663681	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	152	405	0	ENST00000358273.4:c.6176A>G	p.Asp2059Gly	p.D2059G	ENST00000358273	NM_001042492.2	2059	gAc/gGc																																																																														
MYC	4609	MSKCC	GRCh37	8	128752657	128752657	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	90	280	0	ENST00000377970.2:c.818A>G	p.Asp273Gly	p.D273G	ENST00000377970	NM_002467.4	273	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	271	726	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199958	138199958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	164	499	1	ENST00000237289.4:c.1376C>T	p.Ser459Leu	p.S459L	ENST00000237289	NM_001270507.1	459	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	97	523	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437578	56437578	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs746762909		P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	190	629	0	ENST00000407977.2:c.884A>G	p.His295Arg	p.H295R	ENST00000407977		295	cAt/cGt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794899	242794899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	194	796	1	ENST00000334409.5:c.310C>T	p.Arg104Cys	p.R104C	ENST00000334409	NM_005018.2	104	Cgt/Tgt																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323262	31323262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77665001		P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	75	448	1	ENST00000412585.2:c.727C>T	p.Arg243Trp	p.R243W	ENST00000412585	NM_005514.6	243	Cgg/Tgg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162749947	162749947	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	56	458	0	ENST00000367921.3:c.2479C>A	p.Leu827Met	p.L827M	ENST00000367921	NM_006182.2	827	Ctg/Atg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493506	56493506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	70	475	0	ENST00000267101.3:c.2914C>T	p.Pro972Ser	p.P972S	ENST00000267101	NM_001982.3	972	Cca/Tca																																																																														
RAD51	5888	MSKCC	GRCh37	15	41022147	41022149	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	70	590	0	ENST00000267868.3:c.874_876del	p.Ile292del	p.I292del	ENST00000267868	NM_002875.4	291	ATC/-																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229449	36229449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	80	474	0	ENST00000222270.7:c.8139C>A	p.Phe2713Leu	p.F2713L	ENST00000222270	NM_014727.1	2713	ttC/ttA																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159118	143159118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	27	419	0	ENST00000262992.4:c.735C>G	p.Asp245Glu	p.D245E	ENST00000262992	NM_001101669.1	245	gaC/gaG																																																																														
AGO2	27161	MSKCC	GRCh37	8	141572667	141572667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	340	650	0	ENST00000220592.5:c.403G>C	p.Val135Leu	p.V135L	ENST00000220592	NM_012154.3	135	Gtg/Ctg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44894180	44894180	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	46	460	0	ENST00000377967.4:c.569T>G	p.Phe190Cys	p.F190C	ENST00000377967	NM_021140.2	190	tTt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	70	428	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457295	67457295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	81	507	0	ENST00000327367.4:c.269G>T	p.Arg90Leu	p.R90L	ENST00000327367	NM_005902.3	90	cGc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577151	7577151	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs72661119		P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	59	400	0	ENST00000269305.4:c.787A>G	p.Asn263Asp	p.N263D	ENST00000269305	NM_001126112.2	263	Aat/Gat																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395639	45395640	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	42	217	0	ENST00000262160.6:c.494dup	p.Tyr165Ter	p.Y165*	ENST00000262160	NM_005901.5	165	tac/taAc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117581	4117581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	51	456	0	ENST00000262948.5:c.139G>C	p.Asp47His	p.D47H	ENST00000262948	NM_030662.3	47	Gac/Cac																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026843	48026843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	65	306	0	ENST00000234420.5:c.1721C>T	p.Ser574Leu	p.S574L	ENST00000234420	NM_000179.2	574	tCa/tTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532715	187532716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	65	382	0	ENST00000441802.2:c.9677dup	p.Asn3226LysfsTer6	p.N3226Kfs*6	ENST00000441802	NM_005245.3	3226	aac/aaAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591121	67591121	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1390357148		P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	42	241	0	ENST00000274335.5:c.1714C>T	p.Gln572Ter	p.Q572*	ENST00000274335		572	Cag/Tag																																																																														
MET	4233	MSKCC	GRCh37	7	116412010	116412010	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	86	554	3	ENST00000397752.3:c.2995G>T	p.Glu999Ter	p.E999*	ENST00000397752	NM_000245.2	999	Gaa/Taa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041355	47041355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	101	488	0	ENST00000329236.7:c.1467del	p.Asp490ThrfsTer136	p.D490Tfs*136	ENST00000329236	NM_001204466.1	489	Ccc/cc																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412044	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	INS	GG	GG	AATA			P-0040649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	140	537	0	ENST00000397752.3:c.3028_3028+1delinsAATA		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724437	112724450	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCAAGAGATCTA	ATCCAAGAGATCTA	-			P-0040730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	277	522	0	ENST00000369452.4:c.321_334del	p.Leu107PhefsTer22	p.L107Ffs*22	ENST00000369452	NM_007373.3	107	ttATCCAAGAGATCTAta/ttta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0040730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	435	638	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458335	12458335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs72551362		P-0040730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	348	550	1	ENST00000287820.6:c.952G>A	p.Val318Met	p.V318M	ENST00000287820	NM_015869.4	318	Gtg/Atg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467421	66467421	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	111	205	0	ENST00000273854.3:c.848T>G	p.Leu283Arg	p.L283R	ENST00000273854	NM_004439.5	283	cTg/cGg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910375	29910401	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GGCCCTGGCCCTGACCCAGACCTGGGC	GGCCCTGGCCCTGACCCAGACCTGGGC	-			P-0040730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	310	673	0	ENST00000376809.5:c.47_73del	p.Ala16_Ala24del	p.A16_A24del	ENST00000376809	NM_002116.7	15	ggGGCCCTGGCCCTGACCCAGACCTGGGCg/ggg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0040730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	189	357	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117866647	117866647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	103	410	0	ENST00000297338.2:c.998A>T	p.Asp333Val	p.D333V	ENST00000297338	NM_006265.2	333	gAt/gTt																																																																														
SYK	6850	MSKCC	GRCh37	9	93650063	93650110	+	inframe_deletion	In_Frame_Del	DEL	GTACGCTCCGGAATGCATCAACTACTACAAGTTCTCCAGCAAAAGCGA	GTACGCTCCGGAATGCATCAACTACTACAAGTTCTCCAGCAAAAGCGA	-			P-0040730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	102	427	0	ENST00000375746.1:c.1614_1661del	p.Trp538_Asp554delinsCys	p.W538_D554delinsC	ENST00000375746	NM_001174167.1	538	tgGTACGCTCCGGAATGCATCAACTACTACAAGTTCTCCAGCAAAAGCGAt/tgt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336065	73336065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			123	71	271	0	ENST00000377767.4:c.2338A>G	p.Arg780Gly	p.R780G	ENST00000377767	NM_014953.3	780	Aga/Gga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033492	48033492	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs972387746		P-0040732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	112	570	0	ENST00000234420.5:c.3796C>T	p.His1266Tyr	p.H1266Y	ENST00000234420	NM_000179.2	1266	Cat/Tat																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143130069	143130069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			224	76	464	0	ENST00000262992.4:c.947C>A	p.Thr316Lys	p.T316K	ENST00000262992	NM_001101669.1	316	aCa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577098	7577098	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	256	814	0	ENST00000269305.4:c.840A>T	p.Arg280Ser	p.R280S	ENST00000269305	NM_001126112.2	280	agA/agT																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271405	26271405	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	187	622	0	ENST00000305910.3:c.208C>A	p.Arg70Ser	p.R70S	ENST00000305910	NM_003534.2	70	Cgc/Agc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0040818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	30	460	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044907	47044907	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	121	542	1	ENST00000329236.7:c.2003del	p.Gly668AlafsTer56	p.G668Afs*56	ENST00000329236	NM_001204466.1	667	Ggg/gg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485953	8485953	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs763256154		P-0040818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	56	467	0	ENST00000356435.5:c.2864C>A	p.Thr955Asn	p.T955N	ENST00000356435		955	aCc/aAc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128434849	128434849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	54	558	0	ENST00000265960.3:c.5C>T	p.Ala2Val	p.A2V	ENST00000265960	NM_001006617.1	2	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	267	303	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057520607		P-0040862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	303	725	1	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169929	32169929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	250	721	1	ENST00000375023.3:c.3679G>T	p.Gly1227Trp	p.G1227W	ENST00000375023	NM_004557.3	1227	Ggg/Tgg																																																																														
RECQL	5965	MSKCC	GRCh37	12	21629857	21629857	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs751366408		P-0040862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	37	407	0	ENST00000421138.2:c.937A>G	p.Lys313Glu	p.K313E	ENST00000421138		313	Aaa/Gaa																																																																														
RB1	5925	MSKCC	GRCh37	13	49033968	49033968	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0040862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	102	329	0	ENST00000267163.4:c.2106del	p.Ile703LeufsTer2	p.I703Lfs*2	ENST00000267163	NM_000321.2	702	cAa/ca																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761384	59761384	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	108	428	0	ENST00000259008.2:c.3023T>C	p.Leu1008Ser	p.L1008S	ENST00000259008	NM_032043.2	1008	tTg/tCg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713484	40713484	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	175	595	1	ENST00000373198.4:c.4031C>A	p.Pro1344Gln	p.P1344Q	ENST00000373198	NM_133170.3	1344	cCa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629535	187629561	+	inframe_deletion	In_Frame_Del	DEL	TGACAGTAGTACCAATGGGCACGTTCT	TGACAGTAGTACCAATGGGCACGTTCT	-			P-0040862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	122	553	0	ENST00000441802.2:c.1421_1447del	p.Glu474_Met483delinsVal	p.E474_M483delinsV	ENST00000441802	NM_005245.3	474	gAGAACGTGCCCATTGGTACTACTGTCAtg/gtg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419980	152419980	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79626648		P-0040862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	219	576	0	ENST00000206249.3:c.1667G>A	p.Gly556Glu	p.G556E	ENST00000206249	NM_000125.3	556	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	211	778	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70349262	70349262	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	228	461	0	ENST00000374080.3:c.3674A>T	p.Lys1225Met	p.K1225M	ENST00000374080		1225	aAg/aTg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074381	8074381	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	97	347	0	ENST00000377482.5:c.278C>G	p.Pro93Arg	p.P93R	ENST00000377482	NM_018948.3	93	cCc/cGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254662	16254662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			769	84	485	0	ENST00000375759.3:c.1927C>G	p.Pro643Ala	p.P643A	ENST00000375759	NM_015001.2	643	Cct/Gct																																																																														
PGR	5241	MSKCC	GRCh37	11	100922208	100922208	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1205217316		P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	109	273	0	ENST00000325455.5:c.2304C>A	p.Tyr768Ter	p.Y768*	ENST00000325455	NM_001202474.3	768	taC/taA																																																																														
ATM	472	MSKCC	GRCh37	11	108164071	108164071	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1448017467		P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	41	66	0	ENST00000278616.4:c.4643A>G	p.Asp1548Gly	p.D1548G	ENST00000278616	NM_000051.3	1548	gAt/gGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420654	49420655	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			717	85	675	0	ENST00000301067.7:c.15094_15095delinsCT	p.Cys5032Leu	p.C5032L	ENST00000301067	NM_003482.3	5032	TGc/CTc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465443	99465443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	164	523	0	ENST00000268035.6:c.2268C>A	p.Asn756Lys	p.N756K	ENST00000268035	NM_000875.3	756	aaC/aaA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786708	3786708	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	99	647	0	ENST00000262367.5:c.4503G>C	p.Glu1501Asp	p.E1501D	ENST00000262367	NM_004380.2	1501	gaG/gaC																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645012	67645012	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	198	549	0	ENST00000264010.4:c.277A>T	p.Thr93Ser	p.T93S	ENST00000264010	NM_006565.3	93	Acc/Tcc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175854	24175854	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			653	371	653	0	ENST00000263121.7:c.1082T>C	p.Met361Thr	p.M361T	ENST00000263121	NM_003073.3	361	aTg/aCg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593477	55593477	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	26	253	0	ENST00000288135.5:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000288135	NM_000222.2	545	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112155028	112155028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	126	391	0	ENST00000257430.4:c.1299G>T	p.Gln433His	p.Q433H	ENST00000257430	NM_000038.5	433	caG/caT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176694562	176694562	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	98	243	0	ENST00000439151.2:c.5147-1G>A		p.X1716_splice	ENST00000439151	NM_022455.4	1716																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873545	151873545	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	141	497	0	ENST00000262189.6:c.8993C>A	p.Ser2998Ter	p.S2998*	ENST00000262189	NM_170606.2	2998	tCa/tAa																																																																														
LYN	4067	MSKCC	GRCh37	8	56860277	56860278	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	181	332	0	ENST00000519728.1:c.279_280delinsAT	p.Glu94Ter	p.E94*	ENST00000519728	NM_002350.3	93	ctGGag/ctATag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223022	53223022	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040875-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	184	377	0	ENST00000375401.3:c.4050A>C	p.Leu1350Phe	p.L1350F	ENST00000375401	NM_004187.3	1350	ttA/ttC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	27	317	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0040887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	42	331	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11554273		P-0040887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	38	330	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	235	587	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255141	16255142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	83	635	2	ENST00000375759.3:c.2417_2418dup	p.Arg807AspfsTer3	p.R807Dfs*3	ENST00000375759	NM_015001.2	802	-/GA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807991	3807991	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	108	628	0	ENST00000262367.5:c.3428A>G	p.Asp1143Gly	p.D1143G	ENST00000262367	NM_004380.2	1143	gAc/gGc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682204	37682204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	205	763	0	ENST00000447079.4:c.3395C>T	p.Pro1132Leu	p.P1132L	ENST00000447079	NM_015083.1	1132	cCt/cTt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610176	81610176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	65	531	1	ENST00000298171.2:c.1774G>T	p.Val592Phe	p.V592F	ENST00000298171	NM_000369.2	592	Gtt/Ttt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878113	151878113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764593264		P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	122	614	0	ENST00000262189.6:c.6832C>T	p.Pro2278Ser	p.P2278S	ENST00000262189	NM_170606.2	2278	Ccc/Tcc																																																																														
ARAF	369	MSKCC	GRCh37	X	47428415	47428415	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1183909266		P-0040935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	350	810	1	ENST00000377045.4:c.1283G>T	p.Arg428Leu	p.R428L	ENST00000377045	NM_001654.4	428	cGa/cTa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775767	9775767	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1315288471		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	600	826	1	ENST00000377346.4:c.310C>T	p.Arg104Cys	p.R104C	ENST00000377346	NM_005026.3	104	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056253	27056255	+	frameshift_variant	Frame_Shift_Del	DEL	TAC	TAC	CA			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	327	680	0	ENST00000324856.7:c.1249_1251delinsCA	p.Tyr417HisfsTer16	p.Y417Hfs*16	ENST00000324856	NM_006015.4	417	TAC/CA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088691	27088691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	401	829	0	ENST00000324856.7:c.2300C>T	p.Pro767Leu	p.P767L	ENST00000324856	NM_006015.4	767	cCc/cTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088783	27088783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	330	634	0	ENST00000324856.7:c.2392C>T	p.Pro798Ser	p.P798S	ENST00000324856	NM_006015.4	798	Ccc/Tcc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982365	201982366	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	412	860	2	ENST00000359651.3:c.744_745delinsTT	p.Arg249Trp	p.R249W	ENST00000359651		248	ggCCgg/ggTTgg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206650117	206650117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	383	785	0	ENST00000367120.3:c.637C>T	p.His213Tyr	p.H213Y	ENST00000367120	NM_014002.3	213	Cat/Tat																																																																														
PARP1	142	MSKCC	GRCh37	1	226549725	226549725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1191796720		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	356	618	0	ENST00000366794.5:c.2908C>T	p.Pro970Ser	p.P970S	ENST00000366794	NM_001618.3	970	Cct/Tct																																																																														
RET	5979	MSKCC	GRCh37	10	43612087	43612087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	280	656	0	ENST00000355710.3:c.2192G>A	p.Gly731Glu	p.G731E	ENST00000355710	NM_020975.4	731	gGa/gAa																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518550	69518550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	315	619	0	ENST00000294312.3:c.95C>T	p.Pro32Leu	p.P32L	ENST00000294312	NM_005117.2	32	cCc/cTc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625236	69625236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	171	825	0	ENST00000334134.2:c.557G>A	p.Arg186Lys	p.R186K	ENST00000334134	NM_005247.2	186	aGg/aAg																																																																														
PGR	5241	MSKCC	GRCh37	11	100912831	100912831	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	109	401	0	ENST00000325455.5:c.2491C>T	p.Pro831Ser	p.P831S	ENST00000325455	NM_001202474.3	831	Cct/Tct																																																																														
PGR	5241	MSKCC	GRCh37	11	100999386	100999386	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1450269762		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	379	947	0	ENST00000325455.5:c.416C>T	p.Ser139Phe	p.S139F	ENST00000325455	NM_001202474.3	139	tCt/tTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307348	118307348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	10	23	0	ENST00000534358.1:c.121C>T	p.Pro41Ser	p.P41S	ENST00000534358	NM_005933.3	41	Ccc/Tcc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344269	118344269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	288	558	0	ENST00000534358.1:c.2395C>T	p.Pro799Ser	p.P799S	ENST00000534358	NM_005933.3	799	Cct/Tct																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856398	111856398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769643863		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	167	243	0	ENST00000341259.2:c.449C>T	p.Ser150Leu	p.S150L	ENST00000341259	NM_005475.2	150	tCg/tTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114201	115114201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	354	759	0	ENST00000257566.3:c.1016C>A	p.Ser339Tyr	p.S339Y	ENST00000257566	NM_016569.3	339	tCc/tAc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432029	121432029	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	360	955	0	ENST00000257555.6:c.776T>G	p.Val259Gly	p.V259G	ENST00000257555		259	gTc/gGc																																																																														
SETD8	0	MSKCC	GRCh37	12	123880939	123880939	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1328563147		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	231	490	0	ENST00000330479.4:c.557C>T	p.Pro186Leu	p.P186L	ENST00000330479	NM_020382.3	186	cCt/cTt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557874	21557874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	292	676	0	ENST00000382592.4:c.1971G>C	p.Arg657Ser	p.R657S	ENST00000382592	NM_014572.2	657	agG/agC																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562913	21562913	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	353	821	0	ENST00000382592.4:c.1006C>T	p.Gln336Ter	p.Q336*	ENST00000382592	NM_014572.2	336	Cag/Tag																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588650	28588650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	241	515	1	ENST00000241453.7:c.2798G>A	p.Arg933Gln	p.R933Q	ENST00000241453	NM_004119.2	933	cGg/cAg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608527	28608527	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	315	601	0	ENST00000241453.7:c.1615C>T	p.Gln539Ter	p.Q539*	ENST00000241453	NM_004119.2	539	Caa/Taa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001422	29001422	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752383804		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	227	397	1	ENST00000282397.4:c.1310C>T	p.Ser437Leu	p.S437L	ENST00000282397	NM_002019.4	437	tCg/tTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32905080	32905080	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1359997059		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	185	326	0	ENST00000380152.3:c.706C>T	p.His236Tyr	p.H236Y	ENST00000380152		236	Cat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915102	32915102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	313	583	0	ENST00000380152.3:c.6610C>T	p.Pro2204Ser	p.P2204S	ENST00000380152		2204	Cct/Tct																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134184	41134184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	221	457	0	ENST00000379561.5:c.1444C>T	p.Pro482Ser	p.P482S	ENST00000379561	NM_002015.3	482	Cct/Tct																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986517	36986517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	353	650	1	ENST00000354822.5:c.1172C>T	p.Ser391Phe	p.S391F	ENST00000354822	NM_001079668.2	391	tCc/tTc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38591683	38591683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	316	591	0	ENST00000299084.4:c.142C>T	p.Pro48Ser	p.P48S	ENST00000299084	NM_152594.2	48	Cct/Tct																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868438023		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	507	867	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519733		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	480	1107	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472644	88472644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	169	435	0	ENST00000360948.2:c.1911G>A	p.Met637Ile	p.M637I	ENST00000360948	NM_001012338.2	637	atG/atA																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633219	3633219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	443	982	1	ENST00000294008.3:c.5032C>T	p.Pro1678Ser	p.P1678S	ENST00000294008	NM_032444.2	1678	Cca/Tca																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640275	3640275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	519	1004	1	ENST00000294008.3:c.3364C>T	p.Pro1122Ser	p.P1122S	ENST00000294008	NM_032444.2	1122	Ccg/Tcg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857047	9857047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs568622613		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	171	334	0	ENST00000330684.3:c.4354C>T	p.Arg1452Cys	p.R1452C	ENST00000330684	NM_001134407.1	1452	Cgc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857956	9857956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	309	696	1	ENST00000330684.3:c.3445G>A	p.Asp1149Asn	p.D1149N	ENST00000330684	NM_001134407.1	1149	Gac/Aac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858484	9858484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	274	653	1	ENST00000330684.3:c.2917G>A	p.Asp973Asn	p.D973N	ENST00000330684	NM_001134407.1	973	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858730	9858730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	208	413	0	ENST00000330684.3:c.2671C>A	p.Gln891Lys	p.Q891K	ENST00000330684	NM_001134407.1	891	Cag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916121	9916121	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	207	522	0	ENST00000330684.3:c.2168G>A	p.Gly723Glu	p.G723E	ENST00000330684	NM_001134407.1	723	gGg/gAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943662	9943662	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs560839364		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	328	746	0	ENST00000330684.3:c.1279G>A	p.Glu427Lys	p.E427K	ENST00000330684	NM_001134407.1	427	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943704	9943704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866275641		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	314	748	0	ENST00000330684.3:c.1237G>A	p.Glu413Lys	p.E413K	ENST00000330684	NM_001134407.1	413	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032006	10032006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	354	765	0	ENST00000330684.3:c.817C>T	p.Pro273Ser	p.P273S	ENST00000330684	NM_001134407.1	273	Cca/Tca																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274177	10274177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	196	609	0	ENST00000330684.3:c.92C>T	p.Pro31Leu	p.P31L	ENST00000330684	NM_001134407.1	31	cCc/cTc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23634329	23634329	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	365	650	0	ENST00000261584.4:c.2957A>C	p.Asp986Ala	p.D986A	ENST00000261584	NM_024675.3	986	gAt/gCt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845591	72845591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	397	830	0	ENST00000268489.5:c.3749C>T	p.Pro1250Leu	p.P1250L	ENST00000268489	NM_006885.3	1250	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993158	72993158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1332687082		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	487	861	2	ENST00000268489.5:c.887C>T	p.Ser296Leu	p.S296L	ENST00000268489	NM_006885.3	296	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578289	7578290	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	259	735	1	ENST00000269305.4:c.560-1_560delinsAA		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7976105	7976105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	370	757	0	ENST00000319144.4:c.2090A>G	p.Asn697Ser	p.N697S	ENST00000319144	NM_001139.2	697	aAc/aGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29560043	29560043	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs868450405		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	195	368	0	ENST00000358273.4:c.3520C>T	p.Gln1174Ter	p.Q1174*	ENST00000358273	NM_001042492.2	1174	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29654691	29654691	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	230	425	0	ENST00000358273.4:c.5443C>T	p.Gln1815Ter	p.Q1815*	ENST00000358273	NM_001042492.2	1815	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29684350	29684350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	294	607	0	ENST00000358273.4:c.7933G>A	p.Glu2645Lys	p.E2645K	ENST00000358273	NM_001042492.2	2645	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37863275	37863275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	338	775	0	ENST00000269571.5:c.106C>T	p.Pro36Ser	p.P36S	ENST00000269571		36	Cct/Tct																																																																														
EZH1	2145	MSKCC	GRCh37	17	40854926	40854926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	341	626	0	ENST00000428826.2:c.2152C>T	p.Gln718Ter	p.Q718*	ENST00000428826		718	Caa/Taa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40858062	40858062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	386	763	0	ENST00000428826.2:c.1802C>T	p.Ser601Phe	p.S601F	ENST00000428826		601	tCc/tTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435092	56435092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	351	868	1	ENST00000407977.2:c.2045C>T	p.Pro682Leu	p.P682L	ENST00000407977		682	cCc/cTc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78854287	78854287	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	272	530	1	ENST00000306801.3:c.1582C>T	p.Pro528Ser	p.P528S	ENST00000306801	NM_020761.2	528	Cca/Tca																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591862	48591862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	126	536	0	ENST00000342988.3:c.1025C>T	p.Pro342Leu	p.P342L	ENST00000342988	NM_005359.5	342	cCt/cTt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1611833	1611833	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770019485		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	329	762	1	ENST00000344749.5:c.1829C>T	p.Pro610Leu	p.P610L	ENST00000344749	NM_001136139.2	610	cCc/cTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7267901	7267901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	165	377	0	ENST00000302850.5:c.107C>T	p.Pro36Leu	p.P36L	ENST00000302850	NM_000208.2	36	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271945	15271945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	334	899	2	ENST00000263388.2:c.6494C>T	p.Pro2165Leu	p.P2165L	ENST00000263388	NM_000435.2	2165	cCt/cTt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353948	15353948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	181	346	0	ENST00000263377.2:c.2932C>T	p.Pro978Ser	p.P978S	ENST00000263377	NM_058243.2	978	Cca/Tca																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955183	17955183	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1457535594		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	413	883	1	ENST00000458235.1:c.44C>T	p.Ser15Leu	p.S15L	ENST00000458235	NM_000215.3	15	tCa/tTa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214660	36214660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	353	796	1	ENST00000222270.7:c.3086C>T	p.Pro1029Leu	p.P1029L	ENST00000222270	NM_014727.1	1029	cCc/cTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216515	36216515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372953726		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	436	923	0	ENST00000222270.7:c.3778C>T	p.Arg1260Cys	p.R1260C	ENST00000222270	NM_014727.1	1260	Cgt/Tgt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228800	36228800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1393734909		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	380	845	1	ENST00000222270.7:c.7699C>T	p.Arg2567Cys	p.R2567C	ENST00000222270	NM_014727.1	2567	Cgt/Tgt																																																																														
ERF	2077	MSKCC	GRCh37	19	42752973	42752973	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	374	887	0	ENST00000222329.4:c.1291del	p.Ser431ArgfsTer8	p.S431Rfs*8	ENST00000222329	NM_006494.2	431	Tcg/cg																																																																														
ERF	2077	MSKCC	GRCh37	19	42752973	42752975	+	frameshift_variant	Frame_Shift_Del	DEL	AGA	AGA	GG			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	381	891	2	ENST00000222329.4:c.1289_1291delinsCC	p.Ile430ThrfsTer9	p.I430Tfs*9	ENST00000222329	NM_006494.2	430	aTCTcg/aCCcg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966694	25966694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	307	687	0	ENST00000435504.4:c.2512C>T	p.Pro838Ser	p.P838S	ENST00000435504		838	Cct/Tct																																																																														
CENPA	1058	MSKCC	GRCh37	2	27015052	27015052	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs776697460		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	276	558	0	ENST00000335756.4:c.154C>T	p.Arg52Ter	p.R52*	ENST00000335756	NM_001809.3	52	Cga/Tga																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99169254	99169254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	257	499	0	ENST00000074304.5:c.1184C>T	p.Ser395Leu	p.S395L	ENST00000074304	NM_001134224.1	395	tCa/tTa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128029031	128029031	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	211	398	0	ENST00000285398.2:c.1828-2A>G		p.X610_splice	ENST00000285398	NM_000122.1	610																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128044362	128044362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	351	696	0	ENST00000285398.2:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000285398	NM_000122.1	420	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537981	212537981	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs535202189		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	210	405	0	ENST00000342788.4:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000342788	NM_005235.2	542	Gaa/Aaa																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793311	242793311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1021665035		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	371	906	0	ENST00000334409.5:c.766G>A	p.Gly256Arg	p.G256R	ENST00000334409	NM_005018.2	256	Gga/Aga																																																																														
PAK7	0	MSKCC	GRCh37	20	9523329	9523329	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867092977		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	251	555	0	ENST00000353224.5:c.1908G>A	p.Met636Ile	p.M636I	ENST00000353224	NM_177990.2	636	atG/atA																																																																														
PAK7	0	MSKCC	GRCh37	20	9525080	9525080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	275	585	0	ENST00000353224.5:c.1805C>T	p.Ser602Leu	p.S602L	ENST00000353224	NM_177990.2	602	tCa/tTa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546734	9546734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	180	482	0	ENST00000353224.5:c.1288G>A	p.Glu430Lys	p.E430K	ENST00000353224	NM_177990.2	430	Gaa/Aaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546962	9546963	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	152	479	3	ENST00000353224.5:c.1059_1060delinsTT	p.Pro354Ser	p.P354S	ENST00000353224	NM_177990.2	353	ggCCct/ggTTct																																																																														
PAK7	0	MSKCC	GRCh37	20	9561184	9561184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	249	561	0	ENST00000353224.5:c.598C>T	p.His200Tyr	p.H200Y	ENST00000353224	NM_177990.2	200	Cac/Tac																																																																														
PAK7	0	MSKCC	GRCh37	20	9561520	9561520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	280	639	0	ENST00000353224.5:c.262G>A	p.Asp88Asn	p.D88N	ENST00000353224	NM_177990.2	88	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40709551	40709551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568484928		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	262	538	1	ENST00000373198.4:c.4351G>A	p.Glu1451Lys	p.E1451K	ENST00000373198	NM_133170.3	1451	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713382	40713382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770379585		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	370	787	1	ENST00000373198.4:c.4133G>A	p.Arg1378Gln	p.R1378Q	ENST00000373198	NM_133170.3	1378	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713470	40713470	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1318044562		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	332	754	2	ENST00000373198.4:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000373198	NM_133170.3	1349	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739013	40739013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	326	708	0	ENST00000373198.4:c.3271C>T	p.Leu1091Phe	p.L1091F	ENST00000373198	NM_133170.3	1091	Ctc/Ttc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101158	41101158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	305	746	0	ENST00000373198.4:c.1198G>A	p.Ala400Thr	p.A400T	ENST00000373198	NM_133170.3	400	Gcc/Acc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385263	41385263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	279	628	0	ENST00000373198.4:c.698G>A	p.Arg233Lys	p.R233K	ENST00000373198	NM_133170.3	233	aGg/aAg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46252678	46252678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762389152		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	202	362	0	ENST00000371998.3:c.107G>A	p.Arg36Gln	p.R36Q	ENST00000371998		36	cGg/cAg																																																																														
ERG	2078	MSKCC	GRCh37	21	39762962	39762962	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	221	481	0	ENST00000288319.7:c.874C>T	p.Pro292Ser	p.P292S	ENST00000288319	NM_182918.3	292	Cct/Tct																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42843792	42843792	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1242962903		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	325	588	0	ENST00000398585.3:c.1127C>T	p.Ser376Phe	p.S376F	ENST00000398585	NM_001135099.1	376	tCc/tTc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845417	42845417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	267	624	0	ENST00000398585.3:c.845G>A	p.Gly282Glu	p.G282E	ENST00000398585	NM_001135099.1	282	gGg/gAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691762	30691762	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs1215812419		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	183	437	0	ENST00000359013.4:c.339G>A	p.Trp113Ter	p.W113*	ENST00000359013	NM_001024847.2	113	tgG/tgA																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729980	30729981	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	264	527	1	ENST00000359013.4:c.1576_1577delinsTT	p.Pro526Phe	p.P526F	ENST00000359013	NM_001024847.2	526	CCc/TTc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067143	37067143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1162924533		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	104	281	0	ENST00000231790.2:c.1054C>T	p.Leu352Phe	p.L352F	ENST00000231790	NM_000249.3	352	Ctt/Ttt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47155462	47155462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	271	451	0	ENST00000409792.3:c.4619C>T	p.Ser1540Phe	p.S1540F	ENST00000409792	NM_014159.6	1540	tCc/tTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162099	47162099	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	209	444	0	ENST00000409792.3:c.4027C>T	p.Gln1343Ter	p.Q1343*	ENST00000409792	NM_014159.6	1343	Caa/Taa																																																																														
MST1	4485	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	18	40	2	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71064722	71064722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866245092		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	237	507	0	ENST00000318789.4:c.952G>A	p.Glu318Lys	p.E318K	ENST00000318789	NM_032682.5	318	Gaa/Aaa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204771	128204771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	459	940	0	ENST00000341105.2:c.670G>A	p.Glu224Lys	p.E224K	ENST00000341105	NM_032638.4	224	Gaa/Aaa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185169106	185169106	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775670152		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	352	571	1	ENST00000265026.3:c.1201C>T	p.Arg401Trp	p.R401W	ENST00000265026	NM_004721.4	401	Cgg/Tgg																																																																														
BCL6	604	MSKCC	GRCh37	3	187447162	187447163	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	261	738	1	ENST00000232014.4:c.1030_1031delinsTT	p.Pro344Phe	p.P344F	ENST00000232014	NM_001130845.1	344	CCc/TTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189608604	189608604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	306	643	1	ENST00000264731.3:c.1679C>T	p.Ser560Leu	p.S560L	ENST00000264731	NM_003722.4	560	tCa/tTa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808942	1808942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376043260		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	338	750	0	ENST00000260795.2:c.2374G>A	p.Asp792Asn	p.D792N	ENST00000260795		792	Gac/Aac																																																																														
KIT	3815	MSKCC	GRCh37	4	55594198	55594198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766264502		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	221	468	1	ENST00000288135.5:c.1901G>A	p.Arg634Gln	p.R634Q	ENST00000288135	NM_000222.2	634	cGg/cAg																																																																														
KDR	3791	MSKCC	GRCh37	4	55964962	55964962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	196	321	0	ENST00000263923.4:c.2275G>A	p.Glu759Lys	p.E759K	ENST00000263923	NM_002253.2	759	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157539	106157539	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192553789		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	198	402	0	ENST00000380013.4:c.2440C>T	p.Arg814Cys	p.R814C	ENST00000380013	NM_001127208.2	814	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530432	187530432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	177	399	0	ENST00000441802.2:c.10111C>T	p.His3371Tyr	p.H3371Y	ENST00000441802	NM_005245.3	3371	Cac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	220	418	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35861085	35861085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	185	424	0	ENST00000303115.3:c.214G>A	p.Glu72Lys	p.E72K	ENST00000303115	NM_002185.3	72	Gaa/Aaa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876121	35876121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	242	516	0	ENST00000303115.3:c.913G>A	p.Asp305Asn	p.D305N	ENST00000303115	NM_002185.3	305	Gac/Aac																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876352	35876352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	247	642	1	ENST00000303115.3:c.1144C>T	p.Leu382Phe	p.L382F	ENST00000303115	NM_002185.3	382	Ctc/Ttc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950588	38950588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	252	555	0	ENST00000357387.3:c.3362C>T	p.Ser1121Leu	p.S1121L	ENST00000357387	NM_152756.3	1121	tCa/tTa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950622	38950622	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748585755		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	248	517	0	ENST00000357387.3:c.3328C>T	p.Arg1110Cys	p.R1110C	ENST00000357387	NM_152756.3	1110	Cgt/Tgt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515442	149515442	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	310	612	0	ENST00000261799.4:c.41-1G>A		p.X14_splice	ENST00000261799	NM_002609.3	14																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524565	176524565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	389	987	1	ENST00000292408.4:c.2297C>T	p.Pro766Leu	p.P766L	ENST00000292408	NM_213647.1	766	cCc/cTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524585	176524585	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	392	966	0	ENST00000292408.4:c.2317A>C	p.Ser773Arg	p.S773R	ENST00000292408	NM_213647.1	773	Agc/Cgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057557	180057557	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	321	675	0	ENST00000261937.6:c.398G>A	p.Arg133Lys	p.R133K	ENST00000261937	NM_182925.4	133	aGa/aAa																																																																														
IRF4	3662	MSKCC	GRCh37	6	401626	401627	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	280	701	1	ENST00000380956.4:c.948_949delinsTT	p.Leu317Phe	p.L317F	ENST00000380956	NM_001195286.1	316	gtCCtc/gtTTtc																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158419	26158419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	327	822	0	ENST00000289316.2:c.22G>A	p.Ala8Thr	p.A8T	ENST00000289316	NM_138720.2	8	Gct/Act																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163452	32163452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	279	856	0	ENST00000375023.3:c.5774C>T	p.Pro1925Leu	p.P1925L	ENST00000375023	NM_004557.3	1925	cCc/cTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166207	32166207	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761193848		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	267	741	0	ENST00000375023.3:c.4747C>T	p.Arg1583Cys	p.R1583C	ENST00000375023	NM_004557.3	1583	Cgt/Tgt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170241	32170241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	316	824	2	ENST00000375023.3:c.3367C>T	p.Pro1123Ser	p.P1123S	ENST00000375023	NM_004557.3	1123	Cct/Tct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974346	93974346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762911058		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	233	470	0	ENST00000369303.4:c.1708G>A	p.Val570Met	p.V570M	ENST00000369303	NM_004440.3	570	Gtg/Atg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106543568	106543568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	192	361	0	ENST00000369096.4:c.370G>A	p.Asp124Asn	p.D124N	ENST00000369096	NM_001198.3	124	Gac/Aac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609831	117609831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	329	666	0	ENST00000368508.3:c.6868G>A	p.Gly2290Ser	p.G2290S	ENST00000368508	NM_002944.2	2290	Ggt/Agt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686860	117686860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	236	476	0	ENST00000368508.3:c.2857G>A	p.Glu953Lys	p.E953K	ENST00000368508	NM_002944.2	953	Gag/Aag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163748	152163748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs104893956		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	242	567	1	ENST00000206249.3:c.469C>T	p.Arg157Ter	p.R157*	ENST00000206249	NM_000125.3	157	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979427	2979427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	304	644	0	ENST00000396946.4:c.820G>A	p.Glu274Lys	p.E274K	ENST00000396946	NM_032415.4	274	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508944	106508944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	228	599	0	ENST00000359195.3:c.938C>T	p.Pro313Leu	p.P313L	ENST00000359195	NM_002649.2	313	cCg/cTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508955	106508955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759136884		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	223	609	0	ENST00000359195.3:c.949G>A	p.Glu317Lys	p.E317K	ENST00000359195	NM_002649.2	317	Gag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509039	106509039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	311	706	0	ENST00000359195.3:c.1033G>A	p.Asp345Asn	p.D345N	ENST00000359195	NM_002649.2	345	Gac/Aac																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509064	106509064	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868263278		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	316	709	0	ENST00000359195.3:c.1058C>T	p.Ser353Phe	p.S353F	ENST00000359195	NM_002649.2	353	tCc/tTc																																																																														
MET	4233	MSKCC	GRCh37	7	116403179	116403179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	295	540	0	ENST00000397752.3:c.2440C>T	p.Pro814Ser	p.P814S	ENST00000397752	NM_000245.2	814	Ccc/Tcc																																																																														
MET	4233	MSKCC	GRCh37	7	116403302	116403302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	314	635	1	ENST00000397752.3:c.2563G>A	p.Glu855Lys	p.E855K	ENST00000397752	NM_000245.2	855	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116423357	116423357	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	206	334	0	ENST00000397752.3:c.3633-1G>A		p.X1211_splice	ENST00000397752	NM_000245.2	1211																																																																															
BRAF	673	MSKCC	GRCh37	7	140507827	140507827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	328	553	0	ENST00000288602.6:c.644C>T	p.Ser215Phe	p.S215F	ENST00000288602	NM_004333.4	215	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151849961	151849961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	231	531	0	ENST00000262189.6:c.12355C>T	p.Pro4119Ser	p.P4119S	ENST00000262189	NM_170606.2	4119	Cca/Tca																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372151	55372151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	124	544	0	ENST00000297316.4:c.841C>T	p.Pro281Ser	p.P281S	ENST00000297316	NM_022454.3	281	Ccc/Tcc																																																																														
LYN	4067	MSKCC	GRCh37	8	56912075	56912075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	334	680	1	ENST00000519728.1:c.1303G>A	p.Glu435Lys	p.E435K	ENST00000519728	NM_002350.3	435	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995497	68995497	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	169	559	0	ENST00000288368.4:c.1901A>T	p.Lys634Ile	p.K634I	ENST00000288368	NM_024870.2	634	aAa/aTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69143606	69143606	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs754901389		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	177	342	1	ENST00000288368.4:c.4814A>T	p.Glu1605Val	p.E1605V	ENST00000288368	NM_024870.2	1605	gAa/gTa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868516	117868516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	99	311	0	ENST00000297338.2:c.826G>A	p.Asp276Asn	p.D276N	ENST00000297338	NM_006265.2	276	Gat/Aat																																																																														
AGO2	27161	MSKCC	GRCh37	8	141545610	141545610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	485	862	0	ENST00000220592.5:c.2228C>T	p.Pro743Leu	p.P743L	ENST00000220592	NM_012154.3	743	cCc/cTc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090902	5090902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	95	228	0	ENST00000381652.3:c.3050C>T	p.Pro1017Leu	p.P1017L	ENST00000381652	NM_004972.3	1017	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465636	8465636	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	223	480	0	ENST00000356435.5:c.3544del	p.Tyr1182MetfsTer7	p.Y1182Mfs*7	ENST00000356435		1182	Tat/at																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486344	8486344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	109	343	0	ENST00000356435.5:c.2473G>A	p.Gly825Arg	p.G825R	ENST00000356435		825	Ggg/Agg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs864622636		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	279	566	0	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs864622636		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	279	566	0	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317421	1317421	+	downstream_gene_variant	3'Flank	SNP	C	C	T	rs377299533		P-0040959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	180	587	0				ENST00000381566																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	76	474	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0040961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	40	743	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974697	21974701	+	frameshift_variant	Frame_Shift_Del	DEL	AACTA	AACTA	-			P-0040961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	32	463	0	ENST00000304494.5:c.126_130del	p.Asn42LysfsTer76	p.N42Kfs*76	ENST00000304494	NM_000077.4	42	aaTAGTTac/aaac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974697	21974701	+	frameshift_variant	Frame_Shift_Del	DEL	AACTA	AACTA	-			P-0040961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	32	463	0	ENST00000304494.5:c.126_130del	p.Asn42LysfsTer76	p.N42Kfs*76	ENST00000304494	NM_000077.4	42	aaTAGTTac/aaac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343121	118343121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	45	363	1	ENST00000534358.1:c.1247C>T	p.Ala416Val	p.A416V	ENST00000534358	NM_005933.3	416	gCt/gTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133219215	133219215	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	52	731	0	ENST00000320574.5:c.4829del	p.Pro1610LeufsTer23	p.P1610Lfs*23	ENST00000320574	NM_006231.2	1610	cCt/ct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943686	9943686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	43	661	2	ENST00000330684.3:c.1255G>A	p.Val419Met	p.V419M	ENST00000330684	NM_001134407.1	419	Gtg/Atg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719734	190719744	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTTTTTGTT	CTCTTTTTGTT	-			P-0040961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	14	309	0	ENST00000441310.2:c.1737_1747del	p.Leu580ArgfsTer12	p.L580Rfs*12	ENST00000441310	NM_000534.4	579	gCTCTTTTTGTT/g																																																																														
RECQL	5965	MSKCC	GRCh37	12	21624544	21624561	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTCTGCAGTACTCTGT	ATCTCTGCAGTACTCTGT	C			P-0040961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	33	529	0	ENST00000421138.2:c.1468_1485delinsG	p.Thr490AlafsTer13	p.T490Afs*13	ENST00000421138		490	ACAGAGTACTGCAGAGAT/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	667	804	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RET	5979	MSKCC	GRCh37	10	43615532	43615532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145170911		P-0040990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	283	493	5	ENST00000355710.3:c.2611G>A	p.Val871Ile	p.V871I	ENST00000355710	NM_020975.4	871	Gtt/Att																																																																														
PPARG	5468	MSKCC	GRCh37	3	12422874	12422874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	109	556	0	ENST00000287820.6:c.364C>A	p.Leu122Ile	p.L122I	ENST00000287820	NM_015869.4	122	Ctc/Atc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157454308	157454309	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A	rs1314750809		P-0040990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	242	445	1	ENST00000346085.5:c.2519dup	p.Tyr840Ter	p.Y840*	ENST00000346085	NM_020732.3	840	tac/tAac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528852	157528852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	358	598	0	ENST00000346085.5:c.6577G>A	p.Asp2193Asn	p.D2193N	ENST00000346085	NM_020732.3	2193	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	154	406	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	159	435	0				ENST00000310581	NM_198253.2																																																																																
STK11	6794	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs398123406		P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	154	569	0	ENST00000326873.7:c.921-1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098422	11098422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	221	544	0	ENST00000344626.4:c.940G>T	p.Ala314Ser	p.A314S	ENST00000344626	NM_003072.3	314	Gcg/Tcg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404560	8404561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	159	244	0	ENST00000356435.5:c.4186dup	p.Arg1396ProfsTer14	p.R1396Pfs*14	ENST00000356435		1396	cgg/cCgg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195562	102195562	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	166	501	0	ENST00000263464.3:c.322A>T	p.Thr108Ser	p.T108S	ENST00000263464	NM_001165.4	108	Acc/Tcc																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439695	51439695	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	187	402	0	ENST00000262662.1:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000262662		87	cAg/cTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332103	70332103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	35	181	0	ENST00000373644.4:c.8G>T	p.Arg3Leu	p.R3L	ENST00000373644	NM_030625.2	3	cGa/cTa																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112760302	112760302	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	49	297	0	ENST00000369452.4:c.971A>T	p.Glu324Val	p.E324V	ENST00000369452	NM_007373.3	324	gAg/gTg																																																																														
EED	8726	MSKCC	GRCh37	11	85956344	85956344	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1459981515		P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	100	318	0	ENST00000263360.6:c.73A>G	p.Ser25Gly	p.S25G	ENST00000263360	NM_003797.3	25	Agt/Ggt																																																																														
ATM	472	MSKCC	GRCh37	11	108159822	108159822	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	46	124	0	ENST00000278616.4:c.4228A>T	p.Lys1410Ter	p.K1410*	ENST00000278616	NM_000051.3	1410	Aaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108206674	108206674	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	71	320	0	ENST00000278616.4:c.8254A>T	p.Ile2752Phe	p.I2752F	ENST00000278616	NM_000051.3	2752	Atc/Ttc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483885	88483885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	110	738	0	ENST00000360948.2:c.1685C>A	p.Pro562Gln	p.P562Q	ENST00000360948	NM_001012338.2	562	cCg/cAg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40447652	40447652	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs762072134		P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	159	566	0	ENST00000345506.4:c.391G>T	p.Gly131Trp	p.G131W	ENST00000345506	NM_003152.3	131	Ggg/Tgg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221215	1221215	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	109	750	0	ENST00000326873.7:c.738C>A	p.Tyr246Ter	p.Y246*	ENST00000326873	NM_000455.4	246	taC/taA																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2199918	2199918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	234	733	0	ENST00000398665.3:c.687G>T	p.Arg229Ser	p.R229S	ENST00000398665	NM_032482.2	229	agG/agT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143991	11143991	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	118	580	0	ENST00000344626.4:c.3572A>T	p.His1191Leu	p.H1191L	ENST00000344626	NM_003072.3	1191	cAc/cTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367901	15367902	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	215	930	0	ENST00000263377.2:c.1424dup	p.Pro476SerfsTer17	p.P476Sfs*17	ENST00000263377	NM_058243.2	475	cct/ccCt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52728969	52728969	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	172	500	2	ENST00000322088.6:c.1662-1G>A		p.X554_splice	ENST00000322088	NM_014225.5	554																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480313	89480313	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	75	240	0	ENST00000336596.2:c.2150A>T	p.Gln717Leu	p.Q717L	ENST00000336596	NM_005233.5	717	cAg/cTg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523153	176523153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	118	747	1	ENST00000292408.4:c.1917C>A	p.His639Gln	p.H639Q	ENST00000292408	NM_213647.1	639	caC/caA																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405885	157405885	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	38	430	0	ENST00000346085.5:c.2127A>C	p.Gln709His	p.Q709H	ENST00000346085	NM_020732.3	709	caA/caC																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508207	106508207	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	71	289	0	ENST00000359195.3:c.202del	p.Glu68SerfsTer3	p.E68Sfs*3	ENST00000359195	NM_002649.2	67	gtG/gt																																																																														
SMO	6608	MSKCC	GRCh37	7	128852036	128852036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	350	716	0	ENST00000249373.3:c.2108G>T	p.Arg703Leu	p.R703L	ENST00000249373	NM_005631.4	703	cGa/cTa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980586	70980586	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	672	649	0	ENST00000276594.2:c.791C>G	p.Pro264Arg	p.P264R	ENST00000276594	NM_024504.3	264	cCa/cGa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	18	390	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0041174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	74	476	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	116	850	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	20	390	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	298	723	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0041180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	59	423	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1415146710		P-0041180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	130	611	0	ENST00000324856.7:c.1650dup	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0041180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	19	209	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
PGR	5241	MSKCC	GRCh37	11	100998283	100998283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	18	217	0	ENST00000325455.5:c.1519G>A	p.Ala507Thr	p.A507T	ENST00000325455	NM_001202474.3	507	Gcg/Acg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692887	89692887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	26	314	0	ENST00000371953.3:c.371G>T	p.Cys124Phe	p.C124F	ENST00000371953	NM_000314.4	124	tGt/tTt																																																																														
SETD8	0	MSKCC	GRCh37	12	123892117	123892117	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	18	90	0	ENST00000330479.4:c.926T>G	p.Leu309Arg	p.L309R	ENST00000330479	NM_020382.3	309	cTg/cGg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28897035	28897035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	104	502	0	ENST00000282397.4:c.2845C>A	p.Leu949Met	p.L949M	ENST00000282397	NM_002019.4	949	Ctg/Atg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437712	110437712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	44	812	0	ENST00000375856.3:c.689A>G	p.Lys230Arg	p.K230R	ENST00000375856	NM_003749.2	230	aAg/aGg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805044	89805044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	44	803	0	ENST00000389301.3:c.4333G>T	p.Asp1445Tyr	p.D1445Y	ENST00000389301	NM_000135.2	1445	Gac/Tac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227927	55227927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	38	405	0	ENST00000275493.2:c.1394G>T	p.Gly465Val	p.G465V	ENST00000275493	NM_005228.3	465	gGa/gTa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162834	38162834	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	38	705	0	ENST00000317025.8:c.2372del	p.Gly791AspfsTer26	p.G791Dfs*26	ENST00000317025	NM_023034.1	791	gGa/ga																																																																														
STK11	6794	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1177782647		P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	472	709	3	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913343		P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	240	744	1	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187966	32187966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	479	721	1	ENST00000375023.3:c.1255C>A	p.Leu419Met	p.L419M	ENST00000375023	NM_004557.3	419	Ctg/Atg																																																																														
STK40	83931	MSKCC	GRCh37	1	36809525	36809525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	312	830	0	ENST00000373129.3:c.940G>A	p.Asp314Asn	p.D314N	ENST00000373129	NM_032017.1	314	Gac/Aac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71949317	71949317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	512	880	0	ENST00000298229.2:c.3697G>A	p.Glu1233Lys	p.E1233K	ENST00000298229	NM_001567.3	1233	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	49039133	49039133	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	89	156	1	ENST00000267163.4:c.2212-1G>T		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602822	10602823	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	643	903	2	ENST00000171111.5:c.755_756delinsTT	p.Trp252Phe	p.W252F	ENST00000171111	NM_203500.1	252	tGG/tTT																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902528	1902528	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	553	699	2	ENST00000382895.3:c.147C>G	p.Ser49Arg	p.S49R	ENST00000382895	NM_133330.2	49	agC/agG																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139799	55139799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	365	626	2	ENST00000257290.5:c.1460G>T	p.Arg487Leu	p.R487L	ENST00000257290	NM_006206.4	487	cGt/cTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629775	187629775	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	406	724	0	ENST00000441802.2:c.1207A>T	p.Lys403Ter	p.K403*	ENST00000441802	NM_005245.3	403	Aaa/Taa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31493334	31493335	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	198	295	0	ENST00000344624.3:c.1821dup	p.Ala608CysfsTer12	p.A608Cfs*12	ENST00000344624		607	-/T																																																																														
MSH3	4437	MSKCC	GRCh37	5	79961079	79961079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	260	494	2	ENST00000265081.6:c.476G>T	p.Arg159Ile	p.R159I	ENST00000265081	NM_002439.4	159	aGa/aTa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131944320	131944320	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	122	266	0	ENST00000265335.6:c.2732A>T	p.Gln911Leu	p.Q911L	ENST00000265335		911	cAg/cTg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459696	149459696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	483	800	2	ENST00000286301.3:c.511C>G	p.Gln171Glu	p.Q171E	ENST00000286301	NM_005211.3	171	Cag/Gag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5022115	5022116	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	106	495	0	ENST00000381652.3:c.129_130del	p.Tyr44ProfsTer7	p.Y44Pfs*7	ENST00000381652	NM_004972.3	43	cTT/c																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1331504	1331504	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	160	455	0	ENST00000381566.1:c.24G>C	p.Trp8Cys	p.W8C	ENST00000381566		8	tgG/tgC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0041210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	139	743	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0041210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	116	472	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs751477326		P-0041210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	24	758	0	ENST00000269305.4:c.530C>G	p.Pro177Arg	p.P177R	ENST00000269305	NM_001126112.2	177	cCc/cGc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851083	63851083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	219	656	0	ENST00000279873.7:c.1861G>C	p.Asp621His	p.D621H	ENST00000279873	NM_032199.2	621	Gat/Cat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285880	46285880	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	276	456	0	ENST00000334344.6:c.5147+1G>A		p.X1716_splice	ENST00000334344	NM_152641.2	1716																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482607	56482607	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	52	716	0	ENST00000267101.3:c.1064C>G	p.Thr355Ser	p.T355S	ENST00000267101	NM_001982.3	355	aCc/aGc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954022	32954023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1305653361		P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	207	490	6	ENST00000380152.3:c.9097dup	p.Thr3033AsnfsTer11	p.T3033Nfs*11	ENST00000380152		3030	aca/acAa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178129266	178129267	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	CT			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	128	348	0	ENST00000397062.3:c.38_39delinsAG	p.Ser13Ter	p.S13*	ENST00000397062	NM_006164.4	13	tCC/tAG																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178129267	178129267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	128	344	0	ENST00000397062.3:c.38C>A	p.Ser13Tyr	p.S13Y	ENST00000397062	NM_006164.4	13	tCc/tAc																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664727	138664727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	81	167	0	ENST00000330315.3:c.838C>T	p.Pro280Ser	p.P280S	ENST00000330315	NM_023067.3	280	Ccg/Tcg																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26021065	26021079	+	inframe_deletion	In_Frame_Del	DEL	GCGCGTCACTATCAT	GCGCGTCACTATCAT	-			P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	97	536	0	ENST00000357647.3:c.350_364del	p.Arg117_Met121del	p.R117_M121del	ENST00000357647	NM_003529.2	116	aaGCGCGTCACTATCATg/aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0041219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	457	532	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423612	88423612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	149	510	0	ENST00000360948.2:c.2223C>A	p.Ser741Arg	p.S741R	ENST00000360948	NM_001012338.2	741	agC/agA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1064795691		P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	916	700	0	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs121913366		P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	332	345	0	ENST00000288602.6:c.1790T>G	p.Leu597Arg	p.L597R	ENST00000288602	NM_004333.4	597	cTa/cGa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797729	45797729	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776362892		P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	263	662	0	ENST00000372115.3:c.921del	p.Ser308AlafsTer86	p.S308Afs*86	ENST00000372115	NM_001048171.1	307	ggG/gg																																																																														
TET1	80312	MSKCC	GRCh37	10	70450874	70450874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	181	500	0	ENST00000373644.4:c.5714G>T	p.Gly1905Val	p.G1905V	ENST00000373644	NM_030625.2	1905	gGc/gTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861808	57861808	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs768582577		P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	255	588	0	ENST00000228682.2:c.1109C>A	p.Thr370Asn	p.T370N	ENST00000228682	NM_005269.2	370	aCc/aAc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041751	29041751	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	119	268	0	ENST00000282397.4:c.68C>G	p.Ser23Cys	p.S23C	ENST00000282397	NM_002019.4	23	tCt/tGt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220375	1220377	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	421	602	0	ENST00000326873.7:c.470_472del	p.Phe157del	p.F157del	ENST00000326873	NM_000455.4	156	taCTTc/tac																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47607036	47607036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	460	549	0	ENST00000263735.4:c.786G>T	p.Gln262His	p.Q262H	ENST00000263735	NM_002354.2	262	caG/caT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385101	41385101	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	708	608	0	ENST00000373198.4:c.859+1G>C		p.X287_splice	ENST00000373198	NM_133170.3	287																																																																															
INPP4B	8821	MSKCC	GRCh37	4	142949952	142949952	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	187	494	0	ENST00000262992.4:c.2758G>T	p.Gly920Ter	p.G920*	ENST00000262992	NM_001101669.1	920	Gga/Tga																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032197	26032197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	132	344	0	ENST00000244661.2:c.92C>A	p.Pro31Gln	p.P31Q	ENST00000244661	NM_003537.3	31	cCg/cAg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553599	106553599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	146	383	1	ENST00000369096.4:c.1564G>T	p.Ala522Ser	p.A522S	ENST00000369096	NM_001198.3	522	Gcc/Tcc																																																																														
SMO	6608	MSKCC	GRCh37	7	128843381	128843381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	505	602	0	ENST00000249373.3:c.488G>T	p.Trp163Leu	p.W163L	ENST00000249373	NM_005631.4	163	tGg/tTg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70971050	70971050	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	462	566	1	ENST00000276594.2:c.1211G>C	p.Arg404Thr	p.R404T	ENST00000276594	NM_024504.3	404	aGa/aCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521514	8521514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	364	532	0	ENST00000356435.5:c.724C>A	p.Pro242Thr	p.P242T	ENST00000356435		242	Ccc/Acc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87549106	87549106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	339	444	0	ENST00000277120.3:c.1663G>T	p.Val555Phe	p.V555F	ENST00000277120		555	Gtt/Ttt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220502	1220502	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T	rs121913317		P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	240	704	0	ENST00000326873.7:c.595G>T	p.Glu199Ter	p.E199*	ENST00000326873	NM_000455.4	199	Gag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602290	10602290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	333	755	0	ENST00000171111.5:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000171111	NM_203500.1	430	Ggc/Tgc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	67	279	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577071	7577072	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	159	780	0	ENST00000269305.4:c.866_867del	p.Leu289ProfsTer16	p.L289Pfs*16	ENST00000269305	NM_001126112.2	289	cTC/c																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832774	3832774	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	130	596	0	ENST00000262367.5:c.1484A>C	p.Gln495Pro	p.Q495P	ENST00000262367	NM_004380.2	495	cAg/cCg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797816	42797816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	160	744	1	ENST00000575354.2:c.3870del	p.Thr1291LeufsTer11	p.T1291Lfs*11	ENST00000575354	NM_015125.3	1290	Ccc/cc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46583373	46583373	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181240421		P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	146	588	0	ENST00000263734.3:c.301G>A	p.Val101Met	p.V101M	ENST00000263734	NM_001430.4	101	Gtg/Atg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536104	106536104	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	35	338	0	ENST00000369096.4:c.71T>G	p.Val24Gly	p.V24G	ENST00000369096	NM_001198.3	24	gTg/gGg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486095	8486095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	92	603	0	ENST00000356435.5:c.2722G>C	p.Val908Leu	p.V908L	ENST00000356435		908	Gtg/Ctg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87359948	87359948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	98	457	0	ENST00000277120.3:c.1256C>A	p.Ser419Tyr	p.S419Y	ENST00000277120		419	tCc/tAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	175	416	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0041256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	50	366	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537933	212537933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	125	485	1	ENST00000342788.4:c.1672C>A	p.Gln558Lys	p.Q558K	ENST00000342788	NM_005235.2	558	Cag/Aag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138938	64138938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	63	417	0	ENST00000334205.4:c.2305C>A	p.Leu769Met	p.L769M	ENST00000334205	NM_003942.2	769	Ctg/Atg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373137	118373137	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	39	341	1	ENST00000534358.1:c.6530A>T	p.Glu2177Val	p.E2177V	ENST00000534358	NM_005933.3	2177	gAa/gTa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209106858	209106858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	55	449	0	ENST00000345146.2:c.710C>T	p.Ser237Phe	p.S237F	ENST00000345146	NM_005896.2	237	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514480	41514480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	205	513	0	ENST00000373198.4:c.181G>A	p.Glu61Lys	p.E61K	ENST00000373198	NM_133170.3	61	Gag/Aag																																																																														
TP63	8626	MSKCC	GRCh37	3	189584483	189584483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	89	336	0	ENST00000264731.3:c.779C>A	p.Pro260His	p.P260H	ENST00000264731	NM_003722.4	260	cCt/cAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540214	187540214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1420663657		P-0041256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			212	195	467	1	ENST00000441802.2:c.7526C>T	p.Thr2509Ile	p.T2509I	ENST00000441802	NM_005245.3	2509	aCc/aTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517993	176517993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	158	597	0	ENST00000292408.4:c.491C>G	p.Ala164Gly	p.A164G	ENST00000292408	NM_213647.1	164	gCg/gGg																																																																														
APC	324	MSKCC	GRCh37	5	112164669	112164669	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	25	220	0	ENST00000257430.4:c.1743G>T	p.Lys581Asn	p.K581N	ENST00000257430	NM_000038.5	581	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0041269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	617	676	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666654	206666654	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782009287		P-0041269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	505	610	2	ENST00000367120.3:c.1988C>T	p.Ala663Val	p.A663V	ENST00000367120	NM_014002.3	663	gCc/gTc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872775	136872782	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGGTCT	TGTGGTCT	-			P-0041269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	300	478	0	ENST00000241393.3:c.716_723del	p.Lys239SerfsTer34	p.K239Sfs*34	ENST00000241393	NM_003467.2	239	aAGACCACA/a																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430209	181430209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	350	251	0	ENST00000325404.1:c.61G>A	p.Gly21Ser	p.G21S	ENST00000325404	NM_003106.3	21	Ggc/Agc																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020703	26020718	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	TGCTGTTTTTCCGTCA	TGCTGTTTTTCCGTCA	-			P-0041269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	98	240	0				ENST00000357647	NM_003529.2			1/1																																																																													
PTPRD	5789	MSKCC	GRCh37	9	8485821	8485821	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	182	338	0	ENST00000356435.5:c.2996G>C	p.Ser999Thr	p.S999T	ENST00000356435		999	aGc/aCc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193119475	193119475	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	44	375	0	ENST00000367435.3:c.870T>A	p.Tyr290Ter	p.Y290*	ENST00000367435	NM_024529.4	290	taT/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579502	7579503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATCTGGACCTGGGTCTTCAGTGAAC			P-0041387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	119	879	0	ENST00000269305.4:c.159_184dup	p.Glu62GlyfsTer70	p.E62Gfs*70	ENST00000269305	NM_001126112.2	62	gaa/gGTTCACTGAAGACCCAGGTCCAGATGaa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909971	50910565	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTATGACCTTGTCTCTGCTTTCCTGGCCTGACCACAGGTCCACGGTGGCCTTCAGGCTGCTCCCTCCTCCTCCCTCTGGCCCTGTGGACTCCCTGGCCCCCAACCCTACCTCCATCCCCACCCAGACCCTGACGACTTGGAGGGCCCTCCTGCCCGCCTCACCTCCCAGGCCCTCCCCAGGCTACCTCACCCTGACCCCCACTTCCTTCTCCTGCTCCACCTCCCACCCCCAACCCCTGGTCCCTGACCCCATCCGTGCCCATCCCCAGAATGGGAACGACCAGACCCGCCGCCGCCTGGCTGTGTACTGCCTGAAGGATGCCTACCTGCCACTGCGGCTGCTGGAGCGGCTCATGGTGCTGGTGAACGCCGTGGAGATGGCGAGGGTCACTGGCGTGCCCCTCAGCTACCTGCTCAGTCGTGGCCAGCAGGTCAAGGTCGTATCCCAGCTGTTGCGGCAGGTCAGTAGCCGAGACTTGTCCTCGCCACCCCCCACCAGGCACGTCTGTGGCCCCCTCCAGGCAATGGCATCCTGGATGCACTTTTTCTCCCCACTCCCAATCCGCACGGCCCCACCTATACCCACTCCATTTCC	CTATGACCTTGTCTCTGCTTTCCTGGCCTGACCACAGGTCCACGGTGGCCTTCAGGCTGCTCCCTCCTCCTCCCTCTGGCCCTGTGGACTCCCTGGCCCCCAACCCTACCTCCATCCCCACCCAGACCCTGACGACTTGGAGGGCCCTCCTGCCCGCCTCACCTCCCAGGCCCTCCCCAGGCTACCTCACCCTGACCCCCACTTCCTTCTCCTGCTCCACCTCCCACCCCCAACCCCTGGTCCCTGACCCCATCCGTGCCCATCCCCAGAATGGGAACGACCAGACCCGCCGCCGCCTGGCTGTGTACTGCCTGAAGGATGCCTACCTGCCACTGCGGCTGCTGGAGCGGCTCATGGTGCTGGTGAACGCCGTGGAGATGGCGAGGGTCACTGGCGTGCCCCTCAGCTACCTGCTCAGTCGTGGCCAGCAGGTCAAGGTCGTATCCCAGCTGTTGCGGCAGGTCAGTAGCCGAGACTTGTCCTCGCCACCCCCCACCAGGCACGTCTGTGGCCCCCTCCAGGCAATGGCATCCTGGATGCACTTTTTCTCCCCACTCCCAATCCGCACGGCCCCACCTATACCCACTCCATTTCC	-			P-0041387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			9	123	156	0	ENST00000440232.2:c.1494+198_1687-18del		p.X498_splice	ENST00000440232	NM_002691.3	498																																																																															
KDR	3791	MSKCC	GRCh37	4	55971124	55971124	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	96	542	0	ENST00000263923.4:c.1673A>C	p.Asp558Ala	p.D558A	ENST00000263923	NM_002253.2	558	gAc/gCc																																																																														
MGA	23269	MSKCC	GRCh37	15	42003208	42003208	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0041411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	361	594	0	ENST00000219905.7:c.2745T>G	p.Tyr915Ter	p.Y915*	ENST00000219905	NM_001164273.1	915	taT/taG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0041416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	201	468	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257892	198257892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	84	428	0	ENST00000335508.6:c.3560C>T	p.Thr1187Met	p.T1187M	ENST00000335508	NM_012433.2	1187	aCg/aTg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937198	36937198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	133	778	0	ENST00000361632.4:c.1121C>A	p.Ser374Tyr	p.S374Y	ENST00000361632		374	tCt/tAt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	463390	463390	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs774502944		P-0041416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	61	295	0	ENST00000399788.2:c.881A>G	p.Tyr294Cys	p.Y294C	ENST00000399788	NM_001042603.1	294	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574006	7574007	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	217	793	0	ENST00000269305.4:c.1020dup	p.Phe341ValfsTer6	p.F341Vfs*6	ENST00000269305	NM_001126112.2	340	-/G																																																																														
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	68	595	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	82	490	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913348		P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	59	354	0	ENST00000288602.6:c.1391G>T	p.Gly464Val	p.G464V	ENST00000288602	NM_004333.4	464	gGa/gTa																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248536	8248536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	60	439	0	ENST00000335790.3:c.351G>T	p.Gln117His	p.Q117H	ENST00000335790	NM_002315.2	117	caG/caT																																																																														
PGR	5241	MSKCC	GRCh37	11	100933355	100933355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	34	418	0	ENST00000325455.5:c.2035C>G	p.Gln679Glu	p.Q679E	ENST00000325455	NM_001202474.3	679	Caa/Gaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187531142	187531142	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	58	257	0	ENST00000441802.2:c.9881A>T	p.Asp3294Val	p.D3294V	ENST00000441802	NM_005245.3	3294	gAt/gTt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180040053	180040053	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	55	639	0	ENST00000261937.6:c.3389A>T	p.Asp1130Val	p.D1130V	ENST00000261937	NM_182925.4	1130	gAc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	436	580	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937461	178937461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776503460		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	194	405	0	ENST00000263967.3:c.1849C>T	p.Arg617Trp	p.R617W	ENST00000263967	NM_006218.2	617	Cgg/Tgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600005	10600005	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	396	574	0	ENST00000171111.5:c.1571del	p.Gly524AlafsTer8	p.G524Afs*8	ENST00000171111	NM_203500.1	524	gGc/gc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436088	49436088	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	305	447	0	ENST00000301067.7:c.5893G>T	p.Glu1965Ter	p.E1965*	ENST00000301067	NM_003482.3	1965	Gaa/Taa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956704	93956704	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	171	282	0	ENST00000369303.4:c.2533-1G>T		p.X845_splice	ENST00000369303	NM_004440.3	845																																																																															
JAK1	3716	MSKCC	GRCh37	1	65335015	65335015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	279	396	0	ENST00000342505.4:c.626C>T	p.Pro209Leu	p.P209L	ENST00000342505	NM_002227.2	209	cCa/cTa																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649539	206649539	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	178	453	0	ENST00000367120.3:c.374A>T	p.His125Leu	p.H125L	ENST00000367120	NM_014002.3	125	cAc/cTc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625453	69625453	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	362	522	0	ENST00000334134.2:c.340G>T	p.Glu114Ter	p.E114*	ENST00000334134	NM_005247.2	114	Gag/Tag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18446897	18446897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	375	313	0	ENST00000266497.5:c.982C>A	p.Leu328Ile	p.L328I	ENST00000266497		328	Ctc/Atc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420788	49420788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	352	543	0	ENST00000301067.7:c.14961G>T	p.Trp4987Cys	p.W4987C	ENST00000301067	NM_003482.3	4987	tgG/tgT																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589802	28589802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	293	473	0	ENST00000241453.7:c.2578C>A	p.Leu860Met	p.L860M	ENST00000241453	NM_004119.2	860	Ctg/Atg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437173	110437173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	21	28	0	ENST00000375856.3:c.1228G>A	p.Gly410Ser	p.G410S	ENST00000375856	NM_003749.2	410	Ggc/Agc																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40682130	40682130	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	288	388	0	ENST00000249776.8:c.685G>T	p.Ala229Ser	p.A229S	ENST00000249776	NM_033286.3	229	Gct/Tct																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762141	43762141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1471395709		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	476	623	0	ENST00000382044.4:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000382044	NM_001141980.1	435	cCa/cTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778672	3778672	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200780672		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	387	560	0	ENST00000262367.5:c.6376G>T	p.Gly2126Cys	p.G2126C	ENST00000262367	NM_004380.2	2126	Ggc/Tgc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783985	50783985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	307	569	0	ENST00000398568.2:c.376G>T	p.Asp126Tyr	p.D126Y	ENST00000398568	NM_001042412.1	126	Gac/Tac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347699	89347699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	317	569	0	ENST00000301030.4:c.5251G>T	p.Ala1751Ser	p.A1751S	ENST00000301030	NM_001256183.1	1751	Gct/Tct																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441469	40441469	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	364	437	0	ENST00000345506.4:c.40G>C	p.Ala14Pro	p.A14P	ENST00000345506	NM_003152.3	14	Gcg/Ccg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453351	40453351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	531	744	1	ENST00000345506.4:c.1048G>T	p.Ala350Ser	p.A350S	ENST00000345506	NM_003152.3	350	Gcc/Tcc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245390	41245390	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80356875		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	427	545	0	ENST00000357654.3:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000357654	NM_007294.3	720	Gaa/Aaa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117643	70117644	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	361	505	2	ENST00000245479.2:c.111_112delinsAT	p.Gly38Cys	p.G38C	ENST00000245479	NM_000346.3	37	tcGGgc/tcATgc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47602386	47602386	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	291	316	0	ENST00000263735.4:c.439G>T	p.Glu147Ter	p.E147*	ENST00000263735	NM_002354.2	147	Gaa/Taa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190670445	190670445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	325	338	0	ENST00000441310.2:c.383A>T	p.His128Leu	p.H128L	ENST00000441310	NM_000534.4	128	cAc/cTc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225378276	225378276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	318	310	0	ENST00000264414.4:c.619G>T	p.Ala207Ser	p.A207S	ENST00000264414	NM_003590.4	207	Gct/Tct																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659793	227659793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	413	359	2	ENST00000305123.5:c.3662G>T	p.Arg1221Leu	p.R1221L	ENST00000305123	NM_005544.2	1221	cGc/cTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546649	9546649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	459	466	0	ENST00000353224.5:c.1373G>T	p.Gly458Val	p.G458V	ENST00000353224	NM_177990.2	458	gGc/gTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385246	41385246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	168	507	1	ENST00000373198.4:c.715G>T	p.Val239Phe	p.V239F	ENST00000373198	NM_133170.3	239	Gtc/Ttc																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292808	62292808	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	302	345	0	ENST00000482936.1:c.260C>T	p.Ser87Leu	p.S87L	ENST00000482936		87	tCa/tTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41574116	41574116	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	380	511	0	ENST00000263253.7:c.6401A>T	p.Asn2134Ile	p.N2134I	ENST00000263253	NM_001429.3	2134	aAt/aTt																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170016897	170016897	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	262	437	0	ENST00000295797.4:c.1702del	p.Asp568MetfsTer4	p.D568Mfs*4	ENST00000295797	NM_002740.5	568	Gat/at																																																																														
APC	324	MSKCC	GRCh37	5	112116555	112116555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	326	353	0	ENST00000257430.4:c.600G>T	p.Met200Ile	p.M200I	ENST00000257430	NM_000038.5	200	atG/atT																																																																														
APC	324	MSKCC	GRCh37	5	112176998	112176998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	440	471	0	ENST00000257430.4:c.5707A>T	p.Asn1903Tyr	p.N1903Y	ENST00000257430	NM_000038.5	1903	Aac/Tac																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520671	176520671	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1166961756		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	438	578	0	ENST00000292408.4:c.1414C>A	p.Pro472Thr	p.P472T	ENST00000292408	NM_213647.1	472	Ccc/Acc																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045811	26045812	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	256	435	0	ENST00000540144.1:c.173_174delinsAA	p.Ser58Ter	p.S58*	ENST00000540144	NM_003531.2	58	tCC/tAA																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324581	31324581	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs151341152		P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	254	583	0	ENST00000412585.2:c.227T>G	p.Ile76Arg	p.I76R	ENST00000412585	NM_005514.6	76	aTa/aGa																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431620	6431620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	83	223	0	ENST00000356142.4:c.173C>A	p.Thr58Lys	p.T58K	ENST00000356142	NM_018890.3	58	aCa/aAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467783	50467783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	341	513	0	ENST00000331340.3:c.1018G>T	p.Val340Leu	p.V340L	ENST00000331340	NM_006060.4	340	Gtg/Ttg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141582913	141582913	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0041477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	182	461	1	ENST00000220592.5:c.334A>T	p.Lys112Ter	p.K112*	ENST00000220592	NM_012154.3	112	Aag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610363	10610363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	292	649	0	ENST00000171111.5:c.347G>C	p.Arg116Pro	p.R116P	ENST00000171111	NM_203500.1	116	cGg/cCg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	258	692	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205071	123205071	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	151	230	0	ENST00000218089.9:c.2431G>T	p.Glu811Ter	p.E811*	ENST00000218089	NM_001042749.1	811	Gag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259227	89259227	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	150	438	0	ENST00000336596.2:c.371A>T	p.Tyr124Phe	p.Y124F	ENST00000336596	NM_005233.5	124	tAc/tTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097619	8097619	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0041484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	76	241	0	ENST00000346208.3:c.1A>G	p.Met1?	p.M1?	ENST00000346208		1	Atg/Gtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0041522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	162	613	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0041522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	226	625	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0041522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	53	409	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
XIAP	331	MSKCC	GRCh37	X	123019943	123019943	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	117	606	0	ENST00000355640.3:c.431G>C	p.Gly144Ala	p.G144A	ENST00000355640		144	gGg/gCg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591895	48591895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	127	504	0	ENST00000342988.3:c.1058A>G	p.Tyr353Cys	p.Y353C	ENST00000342988	NM_005359.5	353	tAc/tGc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134564	41134564	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	65	460	0	ENST00000379561.5:c.1064T>C	p.Met355Thr	p.M355T	ENST00000379561	NM_002015.3	355	aTg/aCg																																																																														
MET	4233	MSKCC	GRCh37	7	116411883	116411905	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTTTCTCTCTGTTTTAAGATC	TTCTTTCTCTCTGTTTTAAGATC	-			P-0041524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	361	783	0	ENST00000397752.3:c.2888-19_2891del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
TP53	7157	MSKCC	GRCh37	17	7578451	7578458	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGCGCG	ATGGCGCG	-			P-0041535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	191	901	0	ENST00000269305.4:c.472_479del	p.Arg158GlyfsTer20	p.R158Gfs*20	ENST00000269305	NM_001126112.2	158	CGCGCCATg/g																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907100	101907100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	77	391	0	ENST00000374994.4:c.1060C>A	p.Leu354Met	p.L354M	ENST00000374994	NM_004612.2	354	Ctg/Atg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390759	139390760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	154	1119	0	ENST00000277541.6:c.7431dup	p.Ala2478ArgfsTer29	p.A2478Rfs*29	ENST00000277541	NM_017617.3	2477	-/C																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	187	432	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1806089	1806089	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913479		P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	785	796	0	ENST00000260795.2:c.1108G>T	p.Gly370Cys	p.G370C	ENST00000260795		370	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064793881		P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	372	644	1	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg																																																																														
MED12	9968	MSKCC	GRCh37	X	70349973	70349973	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1421325265		P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	289	664	4	ENST00000374080.3:c.3956G>A	p.Arg1319His	p.R1319H	ENST00000374080		1319	cGc/cAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44870210	44870210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	42	397	0	ENST00000377967.4:c.389C>A	p.Ala130Asp	p.A130D	ENST00000377967	NM_021140.2	130	gCt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717738	89717739	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGA			P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	82	360	0	ENST00000371953.3:c.764_767dup	p.Glu256AspfsTer43	p.E256Dfs*43	ENST00000371953	NM_000314.4	255	gta/gTAGAta																																																																														
PPARG	5468	MSKCC	GRCh37	3	12422940	12422940	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	156	516	1	ENST00000287820.6:c.430G>C	p.Asp144His	p.D144H	ENST00000287820	NM_015869.4	144	Gat/Cat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054591	5054591	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1443023071		P-0041577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	16	239	0	ENST00000381652.3:c.643C>T	p.Arg215Ter	p.R215*	ENST00000381652	NM_004972.3	215	Cga/Tga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440899	52440899	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	172	537	0	ENST00000460680.1:c.605G>A	p.Trp202Ter	p.W202*	ENST00000460680	NM_004656.3	202	tGg/tAg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1932488	1932488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	154	657	0	ENST00000382895.3:c.1546G>A	p.Glu516Lys	p.E516K	ENST00000382895	NM_133330.2	516	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793349		P-0041624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	102	283	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0041624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	476	674	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004667	150004676	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAAGAAGG	TCCAAGAAGG	-			P-0041624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	206	580	0	ENST00000253339.5:c.1549_1558del	p.Pro517TyrfsTer21	p.P517Yfs*21	ENST00000253339		517	CCTTCTTGGAta/ta																																																																														
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761345552		P-0041625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	314	959	6	ENST00000575354.2:c.3347dup	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1293850	1293850	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1167344136		P-0041625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	264	1082	2	ENST00000310581.5:c.1151A>G	p.Gln384Arg	p.Q384R	ENST00000310581	NM_198253.2	384	cAg/cGg																																																																														
TET2	54790	MSKCC	GRCh37	4	106157404	106157404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs751233117		P-0041630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	200	406	0	ENST00000380013.4:c.2305C>T	p.Gln769Ter	p.Q769*	ENST00000380013	NM_001127208.2	769	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0041630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	114	612	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65300283	65300283	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	89	355	0	ENST00000342505.4:c.3427C>T	p.Gln1143Ter	p.Q1143*	ENST00000342505	NM_002227.2	1143	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873782	151873782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0041630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	92	442	0	ENST00000262189.6:c.8756C>G	p.Ser2919Ter	p.S2919*	ENST00000262189	NM_170606.2	2919	tCa/tGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874644	151874644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	101	555	0	ENST00000262189.6:c.7894C>T	p.Gln2632Ter	p.Q2632*	ENST00000262189	NM_170606.2	2632	Caa/Taa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs776780353		P-0041630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	177	820	0	ENST00000412585.2:c.19C>T	p.Arg7Ter	p.R7*	ENST00000412585	NM_005514.6	7	Cga/Tga																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	139	333	0	ENST00000397062.3:c.92G>T	p.Gly31Val	p.G31V	ENST00000397062	NM_006164.4	31	gGa/gTa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912276	29912276	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0041630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	227	826	0	ENST00000376809.5:c.896-1G>A		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2207590	2207590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	145	794	1	ENST00000398665.3:c.874C>T	p.Arg292Cys	p.R292C	ENST00000398665	NM_032482.2	292	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228002	36228002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	129	810	0	ENST00000222270.7:c.7388G>A	p.Arg2463Lys	p.R2463K	ENST00000222270	NM_014727.1	2463	aGa/aAa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198269898	198269898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	117	336	0	ENST00000335508.6:c.1441G>C	p.Asp481His	p.D481H	ENST00000335508	NM_012433.2	481	Gat/Cat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528768	8528768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	24	322	0	ENST00000356435.5:c.364C>T	p.Pro122Ser	p.P122S	ENST00000356435		122	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486101	8486101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	53	500	0	ENST00000356435.5:c.2716G>A	p.Glu906Lys	p.E906K	ENST00000356435		906	Gag/Aag																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716098	243716098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	92	484	0	ENST00000263826.5:c.1096C>T	p.Pro366Ser	p.P366S	ENST00000263826	NM_005465.4	366	Cct/Tct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295674	212295674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1362156940		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	41	332	0	ENST00000342788.4:c.2639G>A	p.Gly880Glu	p.G880E	ENST00000342788	NM_005235.2	880	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767328513		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	20	805	1	ENST00000269305.4:c.454C>T	p.Pro152Ser	p.P152S	ENST00000269305	NM_001126112.2	152	Ccg/Tcg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30315429	30315429	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758186567		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	68	588	0	ENST00000322652.5:c.1114C>T	p.Pro372Ser	p.P372S	ENST00000322652	NM_015355.2	372	Cct/Tct																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076812	72076812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	47	416	0	ENST00000357731.5:c.685G>A	p.Glu229Lys	p.E229K	ENST00000357731	NM_173808.2	229	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259967	16259967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	94	620	0	ENST00000375759.3:c.7232C>T	p.Ser2411Leu	p.S2411L	ENST00000375759	NM_015001.2	2411	tCg/tTg																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944967	31944967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	71	582	0	ENST00000340398.3:c.134C>T	p.Thr45Ile	p.T45I	ENST00000340398	NM_001013699.2	45	aCc/aTc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932047	36932047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146617729		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	79	640	0	ENST00000361632.4:c.2422G>A	p.Glu808Lys	p.E808K	ENST00000361632		808	Gag/Aag																																																																														
HGF	3082	MSKCC	GRCh37	7	81388076	81388076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	61	425	0	ENST00000222390.5:c.299C>T	p.Pro100Leu	p.P100L	ENST00000222390	NM_000601.4	100	cCc/cTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81346575	81346575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	37	330	0	ENST00000222390.5:c.1378C>T	p.Pro460Ser	p.P460S	ENST00000222390	NM_000601.4	460	Cct/Tct																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029408	14029408	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368830992		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	52	371	0	ENST00000311895.7:c.1619C>T	p.Ser540Leu	p.S540L	ENST00000311895	NM_005236.2	540	tCg/tTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212587251	212587251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868149408		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	34	372	0	ENST00000342788.4:c.750G>A	p.Met250Ile	p.M250I	ENST00000342788	NM_005235.2	250	atG/atA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817882	3817882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757051244		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	83	471	0	ENST00000262367.5:c.3089C>T	p.Ser1030Phe	p.S1030F	ENST00000262367	NM_004380.2	1030	tCc/tTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55561705	55561705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	39	278	0	ENST00000288135.5:c.95G>A	p.Gly32Glu	p.G32E	ENST00000288135	NM_000222.2	32	gGg/gAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982021	93982021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867625037		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	22	280	0	ENST00000369303.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000369303	NM_004440.3	482	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857935	9857935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	83	620	0	ENST00000330684.3:c.3466G>A	p.Glu1156Lys	p.E1156K	ENST00000330684	NM_001134407.1	1156	Gaa/Aaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356430	66356430	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs943944162		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	23	300	0	ENST00000273854.3:c.1067G>A	p.Arg356Lys	p.R356K	ENST00000273854	NM_004439.5	356	aGa/aAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42052602	42052602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	58	434	0	ENST00000219905.7:c.7273C>T	p.Arg2425Cys	p.R2425C	ENST00000219905	NM_001164273.1	2425	Cgc/Tgc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486824	56486824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1023742896		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	87	517	0	ENST00000267101.3:c.1238C>T	p.Ser413Phe	p.S413F	ENST00000267101	NM_001982.3	413	tCc/tTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460582	149460582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	85	597	0	ENST00000286301.3:c.55G>A	p.Gly19Arg	p.G19R	ENST00000286301	NM_005211.3	19	Gga/Aga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942172	81942172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	75	471	0	ENST00000359376.3:c.1709C>T	p.Pro570Leu	p.P570L	ENST00000359376	NM_002661.3	570	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642515	117642515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	68	562	1	ENST00000368508.3:c.5684G>A	p.Gly1895Glu	p.G1895E	ENST00000368508	NM_002944.2	1895	gGg/gAg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164691	36164691	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868527382		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	92	803	1	ENST00000300305.3:c.1184C>T	p.Pro395Leu	p.P395L	ENST00000300305		395	cCg/cTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012419	29012419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867762505		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	71	580	0	ENST00000282397.4:c.452G>A	p.Gly151Glu	p.G151E	ENST00000282397	NM_002019.4	151	gGa/gAa																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868438023		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	119	688	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418373	139418373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	109	837	0	ENST00000277541.6:c.199C>T	p.Pro67Ser	p.P67S	ENST00000277541	NM_017617.3	67	Ccc/Tcc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141112	55141112	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	50	413	0	ENST00000257290.5:c.1758G>A	p.Trp586Ter	p.W586*	ENST00000257290	NM_006206.4	586	tgG/tgA																																																																														
TET1	80312	MSKCC	GRCh37	10	70332469	70332469	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866518744		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	69	573	0	ENST00000373644.4:c.374C>T	p.Ser125Phe	p.S125F	ENST00000373644	NM_030625.2	125	tCc/tTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50917081	50917081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs541483366		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	82	824	0	ENST00000440232.2:c.2333C>T	p.Ala778Val	p.A778V	ENST00000440232	NM_002691.3	778	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578264	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	69	631	2	ENST00000269305.4:c.585_586delinsTT	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	195	atCCga/atTTga																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664486	138664486	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	50	502	0	ENST00000330315.3:c.1079A>C	p.Tyr360Ser	p.Y360S	ENST00000330315	NM_023067.3	360	tAc/tCc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177990	56177990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1326307145		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	40	431	0	ENST00000399503.3:c.2963C>T	p.Ser988Phe	p.S988F	ENST00000399503	NM_005921.1	988	tCt/tTt																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250440	26250440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	54	449	0	ENST00000446824.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000446824	NM_021018.2	132	Cgc/Tgc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118359392	118359392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	54	346	0	ENST00000534358.1:c.4396C>T	p.Pro1466Ser	p.P1466S	ENST00000534358	NM_005933.3	1466	Cct/Tct																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371984	55371984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	64	532	0	ENST00000297316.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000297316	NM_022454.3	225	tCc/tTc																																																																														
MITF	4286	MSKCC	GRCh37	3	70014293	70014293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	90	606	0	ENST00000352241.4:c.1457C>T	p.Pro486Leu	p.P486L	ENST00000352241	NM_198159.2	486	cCc/cTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964400	93964400	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1051471746		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	43	461	0	ENST00000369303.4:c.2497G>A	p.Gly833Arg	p.G833R	ENST00000369303	NM_004440.3	833	Gga/Aga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566814	212566814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	43	268	0	ENST00000342788.4:c.1367G>A	p.Gly456Glu	p.G456E	ENST00000342788	NM_005235.2	456	gGa/gAa																																																																														
INSR	3643	MSKCC	GRCh37	19	7166227	7166227	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745372291		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	103	635	1	ENST00000302850.5:c.1799C>T	p.Ser600Leu	p.S600L	ENST00000302850	NM_000208.2	600	tCg/tTg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940544	49940544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	99	833	1	ENST00000296474.3:c.499C>T	p.His167Tyr	p.H167Y	ENST00000296474	NM_002447.2	167	Cac/Tac																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206648329	206648329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55721947		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	85	579	2	ENST00000367120.3:c.350G>A	p.Arg117His	p.R117H	ENST00000367120	NM_014002.3	117	cGc/cAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639149	3639149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	69	809	2	ENST00000294008.3:c.4490C>T	p.Ser1497Phe	p.S1497F	ENST00000294008	NM_032444.2	1497	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032077	10032077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	76	614	0	ENST00000330684.3:c.746C>T	p.Thr249Ile	p.T249I	ENST00000330684	NM_001134407.1	249	aCc/aTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243944	5243944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	69	567	0	ENST00000357368.4:c.1538C>T	p.Ser513Leu	p.S513L	ENST00000357368	NM_002850.3	513	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434960	49434960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	78	549	3	ENST00000301067.7:c.6593C>T	p.Pro2198Leu	p.P2198L	ENST00000301067	NM_003482.3	2198	cCc/cTc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978697	70978697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760525174		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	84	648	0	ENST00000276594.2:c.956G>A	p.Gly319Glu	p.G319E	ENST00000276594	NM_024504.3	319	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710528	117710528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	16	186	0	ENST00000368508.3:c.1744C>T	p.Leu582Phe	p.L582F	ENST00000368508	NM_002944.2	582	Ctt/Ttt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112893802	112893802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	53	412	1	ENST00000351677.2:c.691C>T	p.Arg231Ter	p.R231*	ENST00000351677	NM_002834.3	231	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228564	36228564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	95	691	0	ENST00000222270.7:c.7578C>A	p.Phe2526Leu	p.F2526L	ENST00000222270	NM_014727.1	2526	ttC/ttA																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023865	31023865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	60	565	0	ENST00000375687.4:c.3350C>T	p.Pro1117Leu	p.P1117L	ENST00000375687	NM_015338.5	1117	cCc/cTc																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349221	11349221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	11	125	0	ENST00000332029.2:c.115C>T	p.Pro39Ser	p.P39S	ENST00000332029	NM_003745.1	39	Ccg/Tcg																																																																														
TET2	54790	MSKCC	GRCh37	4	106196610	106196610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	62	409	1	ENST00000380013.4:c.4943C>T	p.Ser1648Phe	p.S1648F	ENST00000380013	NM_001127208.2	1648	tCc/tTc																																																																														
SDHA	6389	MSKCC	GRCh37	5	224505	224505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	32	238	0	ENST00000264932.6:c.181G>A	p.Glu61Lys	p.E61K	ENST00000264932	NM_004168.2	61	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961580	41961580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	66	455	0	ENST00000219905.7:c.488C>T	p.Pro163Leu	p.P163L	ENST00000219905	NM_001164273.1	163	cCt/cTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468082	120468083	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	62	634	0	ENST00000256646.2:c.4356_4357delinsAA	p.Gly1453Ser	p.G1453S	ENST00000256646	NM_024408.3	1452	ggGGgt/ggAAgt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745441	162745441	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	26	273	0	ENST00000367921.3:c.1857-1G>A		p.X619_splice	ENST00000367921	NM_006182.2	619																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651591	206651591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	103	757	0	ENST00000367120.3:c.901G>A	p.Glu301Lys	p.E301K	ENST00000367120	NM_014002.3	301	Gag/Aag																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246021911	246021912	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	87	628	1	ENST00000388985.4:c.962_963delinsTT	p.Pro321Leu	p.P321L	ENST00000388985		321	cCC/cTT																																																																														
ATM	472	MSKCC	GRCh37	11	108235901	108235901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	63	371	0	ENST00000278616.4:c.8943C>A	p.His2981Gln	p.H2981Q	ENST00000278616	NM_000051.3	2981	caC/caA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424193	49424194	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	64	342	1	ENST00000301067.7:c.13868_13869delinsTT	p.Pro4623Leu	p.P4623L	ENST00000301067	NM_003482.3	4623	cCC/cTT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425254	49425254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	79	758	0	ENST00000301067.7:c.13234C>T	p.Gln4412Ter	p.Q4412*	ENST00000301067	NM_003482.3	4412	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431466	49431466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	80	721	1	ENST00000301067.7:c.9673G>A	p.Gly3225Arg	p.G3225R	ENST00000301067	NM_003482.3	3225	Gga/Aga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49439876	49439877	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	96	702	1	ENST00000301067.7:c.4664_4665delinsTT	p.Ser1555Phe	p.S1555F	ENST00000301067	NM_003482.3	1555	tCC/tTT																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486853	56486853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	67	397	0	ENST00000267101.3:c.1267C>T	p.Leu423Phe	p.L423F	ENST00000267101	NM_001982.3	423	Ctc/Ttc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863245	57863245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	56	551	0	ENST00000228682.2:c.1340C>T	p.Ser447Phe	p.S447F	ENST00000228682	NM_005269.2	447	tCc/tTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865629	57865629	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763752118		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	131	895	1	ENST00000228682.2:c.3106C>A	p.Pro1036Thr	p.P1036T	ENST00000228682	NM_005269.2	1036	Ccc/Acc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975691	26975691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs529227329		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	65	456	0	ENST00000381527.3:c.1199C>T	p.Pro400Leu	p.P400L	ENST00000381527	NM_001260.1	400	cCg/cTg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554332	81554332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1414102266		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	36	418	0	ENST00000298171.2:c.352G>A	p.Asp118Asn	p.D118N	ENST00000298171	NM_000369.2	118	Gac/Aac																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566196	95566197	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	80	575	1	ENST00000343455.3:c.4126_4127delinsTT	p.Pro1376Phe	p.P1376F	ENST00000343455	NM_177438.2	1376	CCc/TTc																																																																														
RAD51	5888	MSKCC	GRCh37	15	40990959	40990959	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	56	332	0	ENST00000267868.3:c.3G>A	p.Met1?	p.M1?	ENST00000267868	NM_002875.4	1	atG/atA																																																																														
MGA	23269	MSKCC	GRCh37	15	42058976	42058976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	61	342	0	ENST00000219905.7:c.8696C>T	p.Pro2899Leu	p.P2899L	ENST00000219905	NM_001164273.1	2899	cCc/cTc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	339570	339570	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	98	741	2	ENST00000262320.3:c.2332C>T	p.Gln778Ter	p.Q778*	ENST00000262320	NM_003502.3	778	Cag/Tag																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343679	343680	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	97	889	0	ENST00000262320.3:c.1994_1995delinsTT	p.Ser665Phe	p.S665F	ENST00000262320	NM_003502.3	665	tCC/tTT																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096246	2096246	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	114	804	1	ENST00000219066.1:c.261G>A	p.Trp87Ter	p.W87*	ENST00000219066	NM_002528.5	87	tgG/tgA																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2218144	2218144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	88	792	1	ENST00000326181.6:c.206C>T	p.Ser69Phe	p.S69F	ENST00000326181	NM_032271.2	69	tCc/tTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658746	3658746	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	103	773	1	ENST00000294008.3:c.220A>G	p.Arg74Gly	p.R74G	ENST00000294008	NM_032444.2	74	Agg/Ggg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857699	9857699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	64	406	0	ENST00000330684.3:c.3702C>A	p.Phe1234Leu	p.F1234L	ENST00000330684	NM_001134407.1	1234	ttC/ttA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923644	72923644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	59	555	0	ENST00000268489.5:c.3434C>T	p.Pro1145Leu	p.P1145L	ENST00000268489	NM_006885.3	1145	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993096	72993096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	105	834	0	ENST00000268489.5:c.949C>T	p.Leu317Phe	p.L317F	ENST00000268489	NM_006885.3	317	Ctt/Ttt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89345485	89345485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	57	469	1	ENST00000301030.4:c.7465C>T	p.Pro2489Ser	p.P2489S	ENST00000301030	NM_001256183.1	2489	Ccc/Tcc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627545	37627546	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	68	558	0	ENST00000447079.4:c.1460_1461delinsTT	p.Ser487Phe	p.S487F	ENST00000447079	NM_015083.1	487	tCC/tTT																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872850	37872850	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	79	605	0	ENST00000269571.5:c.1729T>G	p.Phe577Val	p.F577V	ENST00000269571		577	Ttt/Gtt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243811	41243811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	78	503	1	ENST00000357654.3:c.3737C>T	p.Thr1246Ile	p.T1246I	ENST00000357654	NM_007294.3	1246	aCc/aTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244594	41244594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	87	619	0	ENST00000357654.3:c.2954C>T	p.Pro985Leu	p.P985L	ENST00000357654	NM_007294.3	985	cCc/cTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41249297	41249297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55688530		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	75	419	1	ENST00000357654.3:c.557C>T	p.Ser186Phe	p.S186F	ENST00000357654	NM_007294.3	186	tCt/tTt																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805641	46805642	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	92	879	1	ENST00000290295.7:c.314_315delinsTT	p.Thr105Ile	p.T105I	ENST00000290295	NM_006361.5	105	aCC/aTT																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223347	2223347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	97	774	1	ENST00000398665.3:c.3458C>T	p.Ser1153Phe	p.S1153F	ENST00000398665	NM_032482.2	1153	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222989	5222990	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	64	714	3	ENST00000357368.4:c.2813_2814delinsTT	p.Ala938Val	p.A938V	ENST00000357368	NM_002850.3	938	gCC/gTT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262476	10262476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	96	629	2	ENST00000340748.4:c.2019G>A	p.Met673Ile	p.M673I	ENST00000340748		673	atG/atA																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291065	10291065	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138841970		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	79	639	0	ENST00000340748.4:c.406C>T	p.Arg136Cys	p.R136C	ENST00000340748		136	Cgc/Tgc																																																																														
CALR	811	MSKCC	GRCh37	19	13051571	13051571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	54	470	0	ENST00000316448.5:c.830C>T	p.Pro277Leu	p.P277L	ENST00000316448	NM_004343.3	277	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271475	15271475	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	123	1002	0	ENST00000263388.2:c.6964T>G	p.Ter2322GlyextTer106	p.*2322Gext*106	ENST00000263388	NM_000435.2	2322	Tga/Gga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366208	15366209	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	87	727	1	ENST00000263377.2:c.1946_1947delinsTT	p.Pro649Leu	p.P649L	ENST00000263377	NM_058243.2	649	cCC/cTT																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945910	17945910	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	111	819	0	ENST00000458235.1:c.2029G>C	p.Ala677Pro	p.A677P	ENST00000458235	NM_000215.3	677	Gct/Cct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213587	36213588	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	108	916	0	ENST00000222270.7:c.2689_2690delinsTT	p.Pro897Phe	p.P897F	ENST00000222270	NM_014727.1	897	CCt/TTt																																																																														
AKT2	208	MSKCC	GRCh37	19	40739807	40739807	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	84	761	0	ENST00000392038.2:c.1418T>G	p.Phe473Cys	p.F473C	ENST00000392038	NM_001626.4	473	tTc/tGc																																																																														
CIC	23152	MSKCC	GRCh37	19	42796904	42796904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	121	847	0	ENST00000575354.2:c.3362C>T	p.Thr1121Ile	p.T1121I	ENST00000575354	NM_015125.3	1121	aCt/aTt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906412	50906412	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs878854518		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	94	738	0	ENST00000440232.2:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000440232	NM_002691.3	358	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50916778	50916779	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	80	545	1	ENST00000440232.2:c.2250_2250+1delinsAA		p.X750_splice	ENST00000440232	NM_002691.3	750																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973170	25973170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	38	360	0	ENST00000435504.4:c.1255C>T	p.Leu419Phe	p.L419F	ENST00000435504		419	Ctt/Ttt																																																																														
CASP8	841	MSKCC	GRCh37	2	202149816	202149816	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	79	497	1	ENST00000358485.4:c.1257T>A	p.Cys419Ter	p.C419*	ENST00000358485	NM_001080125.1	419	tgT/tgA																																																																														
PAK7	0	MSKCC	GRCh37	20	9561433	9561433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	67	531	0	ENST00000353224.5:c.349C>T	p.Pro117Ser	p.P117S	ENST00000353224	NM_177990.2	117	Cca/Tca																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024345	31024345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	58	638	1	ENST00000375687.4:c.3830C>T	p.Pro1277Leu	p.P1277L	ENST00000375687	NM_015338.5	1277	cCa/cTa																																																																														
SRC	6714	MSKCC	GRCh37	20	36012782	36012783	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	43	188	1	ENST00000358208.4:c.226_227delinsTT	p.Pro76Leu	p.P76L	ENST00000358208		76	CCg/TTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41547937	41547938	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	73	459	1	ENST00000263253.7:c.2918_2919delinsTT	p.Ser973Phe	p.S973F	ENST00000263253	NM_001429.3	973	tCC/tTT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084141	47084141	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	77	527	0	ENST00000409792.3:c.7148C>G	p.Pro2383Arg	p.P2383R	ENST00000409792	NM_014159.6	2383	cCt/cGt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651447	52651447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	80	498	1	ENST00000394830.3:c.1649C>T	p.Pro550Leu	p.P550L	ENST00000394830	NM_018313.4	550	cCa/cTa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670709	134670709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	75	513	0	ENST00000398015.3:c.620C>T	p.Pro207Leu	p.P207L	ENST00000398015	NM_004441.4	207	cCa/cTa																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664826	138664826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	30	166	0	ENST00000330315.3:c.739G>A	p.Gly247Arg	p.G247R	ENST00000330315	NM_023067.3	247	Ggg/Agg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902413	1902413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	77	581	0	ENST00000382895.3:c.32C>T	p.Ser11Phe	p.S11F	ENST00000382895	NM_133330.2	11	tCt/tTt																																																																														
KIT	3815	MSKCC	GRCh37	4	55598137	55598138	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	50	479	0	ENST00000288135.5:c.2334_2335delinsAA	p.Gly779Ser	p.G779S	ENST00000288135	NM_000222.2	778	aaGGgc/aaAAgc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143181656	143181656	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	62	437	0	ENST00000262992.4:c.677T>A	p.Phe226Tyr	p.F226Y	ENST00000262992	NM_001101669.1	226	tTt/tAt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945724	38945724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	38	265	0	ENST00000357387.3:c.4502C>T	p.Ser1501Phe	p.S1501F	ENST00000357387	NM_152756.3	1501	tCt/tTt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177933	56177934	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	68	450	0	ENST00000399503.3:c.2906_2907delinsTT	p.Ser969Phe	p.S969F	ENST00000399503	NM_005921.1	969	tCC/tTT																																																																														
MSH3	4437	MSKCC	GRCh37	5	79966068	79966068	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	82	477	0	ENST00000265081.6:c.732A>C	p.Lys244Asn	p.K244N	ENST00000265081	NM_002439.4	244	aaA/aaC																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149439312	149439312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	77	610	0	ENST00000286301.3:c.2083G>A	p.Gly695Arg	p.G695R	ENST00000286301	NM_005211.3	695	Gga/Aga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058708	180058709	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	117	837	0	ENST00000261937.6:c.128_129delinsTT	p.Thr43Ile	p.T43I	ENST00000261937	NM_182925.4	43	aCC/aTT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679741	30679742	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	59	641	0	ENST00000376406.3:c.1977_1978delinsTT	p.Gln660Ter	p.Q660*	ENST00000376406	NM_014641.2	659	acCCag/acTTag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652131	36652131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	75	728	0	ENST00000244741.5:c.253G>A	p.Gly85Ser	p.G85S	ENST00000244741	NM_000389.4	85	Ggc/Agc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066711	94066711	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	55	434	0	ENST00000369303.4:c.1048G>T	p.Glu350Ter	p.E350*	ENST00000369303	NM_004440.3	350	Gaa/Taa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120690	94120691	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	35	384	1	ENST00000369303.4:c.360_361delinsAA	p.Glu121Lys	p.E121K	ENST00000369303	NM_004440.3	120	aaGGaa/aaAAaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469895	157469896	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	59	620	2	ENST00000346085.5:c.2689_2690delinsAA	p.Gly897Lys	p.G897K	ENST00000346085	NM_020732.3	897	GGa/AAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979523	2979523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	61	468	1	ENST00000396946.4:c.724G>A	p.Glu242Lys	p.E242K	ENST00000396946	NM_032415.4	242	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81346569	81346569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	38	321	0	ENST00000222390.5:c.1384G>A	p.Asp462Asn	p.D462N	ENST00000222390	NM_000601.4	462	Gat/Aat																																																																														
HGF	3082	MSKCC	GRCh37	7	81350121	81350121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	35	357	0	ENST00000222390.5:c.1211C>T	p.Ser404Phe	p.S404F	ENST00000222390	NM_000601.4	404	tCc/tTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508630	106508631	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	51	470	1	ENST00000359195.3:c.624_625delinsAA	p.Glu209Lys	p.E209K	ENST00000359195	NM_002649.2	208	ccGGag/ccAAag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509490	106509490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	62	572	0	ENST00000359195.3:c.1484G>A	p.Gly495Glu	p.G495E	ENST00000359195	NM_002649.2	495	gGa/gAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509556	106509557	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	56	600	1	ENST00000359195.3:c.1550_1551delinsTT	p.Ser517Phe	p.S517F	ENST00000359195	NM_002649.2	517	tCC/tTT																																																																														
MET	4233	MSKCC	GRCh37	7	116411582	116411583	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	58	378	1	ENST00000397752.3:c.2761_2762delinsAA	p.Gly921Lys	p.G921K	ENST00000397752	NM_000245.2	921	GGa/AAa																																																																														
SMO	6608	MSKCC	GRCh37	7	128852134	128852134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	87	811	1	ENST00000249373.3:c.2206C>T	p.Pro736Ser	p.P736S	ENST00000249373	NM_005631.4	736	Cca/Tca																																																																														
BRAF	673	MSKCC	GRCh37	7	140494248	140494248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	126	883	0	ENST00000288602.6:c.1000C>T	p.Pro334Ser	p.P334S	ENST00000288602	NM_004333.4	334	Ccg/Tcg																																																																														
RHEB	6009	MSKCC	GRCh37	7	151168669	151168669	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375061279		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	92	435	0	ENST00000262187.5:c.298C>T	p.His100Tyr	p.H100Y	ENST00000262187	NM_005614.3	100	Cat/Tat																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194670	29194670	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772256235		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	92	804	0	ENST00000240100.2:c.1058G>A	p.Arg353Gln	p.R353Q	ENST00000240100	NM_001394.6	353	cGg/cAg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372351	55372351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	91	685	1	ENST00000297316.4:c.1041C>A	p.Asp347Glu	p.D347E	ENST00000297316	NM_022454.3	347	gaC/gaA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319833	8319833	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs753209923		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	33	254	0	ENST00000356435.5:c.5668G>A	p.Glu1890Lys	p.E1890K	ENST00000356435		1890	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465545	8465545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	59	505	0	ENST00000356435.5:c.3635G>A	p.Gly1212Asp	p.G1212D	ENST00000356435		1212	gGt/gAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517850	8517850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	31	229	0	ENST00000356435.5:c.1541G>A	p.Gly514Glu	p.G514E	ENST00000356435		514	gGa/gAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98221908	98221926	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGCTTTGTCGTGGACCC	TCGGCTTTGTCGTGGACCC	-			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	32	521	0	ENST00000331920.6:c.2843_2861del	p.Trp948SerfsTer8	p.W948Sfs*8	ENST00000331920	NM_000264.3	948	tGGGTCCACGACAAAGCCGAc/tc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900230	101900230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328696339		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	49	357	0	ENST00000374994.4:c.664G>A	p.Gly222Arg	p.G222R	ENST00000374994	NM_004612.2	222	Gga/Aga																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139820258	139820258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	91	663	0	ENST00000247668.2:c.1411C>T	p.Leu471Phe	p.L471F	ENST00000247668	NM_021138.3	471	Ctc/Ttc																																																																														
ARAF	369	MSKCC	GRCh37	X	47428427	47428427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	65	299	0	ENST00000377045.4:c.1295C>T	p.Ser432Phe	p.S432F	ENST00000377045	NM_001654.4	432	tCt/tTt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964398	70964398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1289330671		P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	47	413	0	ENST00000276594.2:c.1630G>A	p.Asp544Asn	p.D544N	ENST00000276594	NM_024504.3	544	Gat/Aat																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851156	63851156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	61	573	1	ENST00000279873.7:c.1937del	p.Pro646GlnfsTer17	p.P646Qfs*17	ENST00000279873	NM_032199.2	645	aCc/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0041733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	191	790	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518279	187518279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779582047		P-0041733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	67	372	0	ENST00000441802.2:c.12415G>A	p.Gly4139Arg	p.G4139R	ENST00000441802	NM_005245.3	4139	Ggg/Agg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672534	30672534	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs774404458		P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	316	725	0	ENST00000376406.3:c.4426G>T	p.Gly1476Ter	p.G1476*	ENST00000376406	NM_014641.2	1476	Gga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	17	307	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	17	307	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	17	307	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	316	674	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	166	290	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
DIS3	22894	MSKCC	GRCh37	13	73355047	73355047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	205	443	0	ENST00000377767.4:c.323G>A	p.Arg108His	p.R108H	ENST00000377767	NM_014953.3	108	cGc/cAc																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771570	112771570	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	71	489	0	ENST00000369452.4:c.1743G>T	p.Met581Ile	p.M581I	ENST00000369452	NM_007373.3	581	atG/atT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447022	49447023	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	170	458	1	ENST00000301067.7:c.921_922delinsTT	p.Met307_Glu308delinsIleTer	p.M307_E308delinsI*	ENST00000301067	NM_003482.3	307	atGGag/atTTag																																																																														
POLE	5426	MSKCC	GRCh37	12	133245527	133245527	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	140	406	0	ENST00000320574.5:c.1795-2A>T		p.X599_splice	ENST00000320574	NM_006231.2	599																																																																															
IDH2	3418	MSKCC	GRCh37	15	90628291	90628291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	366	825	0	ENST00000330062.3:c.1120G>T	p.Ala374Ser	p.A374S	ENST00000330062	NM_002168.2	374	Gcc/Tcc																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519919	66519919	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	178	454	0	ENST00000358598.2:c.402G>C	p.Lys134Asn	p.K134N	ENST00000358598	NM_212471.2	134	aaG/aaC																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210647	2210647	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	274	673	0	ENST00000398665.3:c.1144G>T	p.Gly382Ter	p.G382*	ENST00000398665	NM_032482.2	382	Gga/Tga																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086125	16086125	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	211	618	0	ENST00000281043.3:c.1301A>T	p.Gln434Leu	p.Q434L	ENST00000281043	NM_005378.4	434	cAg/cTg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634681	158634681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	98	374	0	ENST00000263640.3:c.505G>T	p.Gly169Trp	p.G169W	ENST00000263640	NM_001105.4	169	Ggg/Tgg																																																																														
BARD1	580	MSKCC	GRCh37	2	215674193	215674193	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876659387		P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	202	661	0	ENST00000260947.4:c.101G>T	p.Trp34Leu	p.W34L	ENST00000260947	NM_000465.2	34	tGg/tTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561387	9561387	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs760277504		P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	246	547	0	ENST00000353224.5:c.395C>A	p.Ser132Tyr	p.S132Y	ENST00000353224	NM_177990.2	132	tCc/tAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201805	66201805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	160	487	1	ENST00000273854.3:c.2697C>A	p.Ser899Arg	p.S899R	ENST00000273854	NM_004439.5	899	agC/agA																																																																														
TERT	7015	MSKCC	GRCh37	5	1293902	1293902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	439	816	0	ENST00000310581.5:c.1099G>T	p.Gly367Cys	p.G367C	ENST00000310581	NM_198253.2	367	Ggt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	19	360	0	ENST00000304494.5:c.132C>A	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0041864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	91	617	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468167	50468167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	44	660	2	ENST00000331340.3:c.1402C>T	p.Arg468Trp	p.R468W	ENST00000331340	NM_006060.4	468	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	91	283	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577584	7577584	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	376	663	1	ENST00000269305.4:c.697del	p.His233ThrfsTer14	p.H233Tfs*14	ENST00000269305	NM_001126112.2	233	Cac/ac																																																																														
MTOR	2475	MSKCC	GRCh37	1	11172917	11172917	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	198	660	0	ENST00000361445.4:c.7358A>T	p.Gln2453Leu	p.Q2453L	ENST00000361445	NM_004958.3	2453	cAg/cTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120478097	120478097	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	77	506	0	ENST00000256646.2:c.3653G>C	p.Arg1218Pro	p.R1218P	ENST00000256646	NM_024408.3	1218	cGg/cCg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499737	18499737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	182	472	0	ENST00000266497.5:c.1592C>A	p.Ala531Glu	p.A531E	ENST00000266497		531	gCa/gAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29556138	29556139	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	12	119	0	ENST00000358273.4:c.2505_2506delinsTT	p.Gln835_Glu836delinsHisTer	p.Q835_E836delinsH*	ENST00000358273	NM_001042492.2	835	caGGaa/caTTaa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58700975	58700975	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	713	704	0	ENST00000305921.3:c.566A>C	p.His189Pro	p.H189P	ENST00000305921	NM_003620.3	189	cAc/cCc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661995	227661995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	252	742	0	ENST00000305123.5:c.1460G>T	p.Arg487Leu	p.R487L	ENST00000305123	NM_005544.2	487	cGg/cTg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204759	128204759	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs375298899		P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	464	1021	0	ENST00000341105.2:c.682C>A	p.Pro228Thr	p.P228T	ENST00000341105	NM_032638.4	228	Ccc/Acc																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538915	23538915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	211	666	1	ENST00000380871.4:c.524G>A	p.Arg175Lys	p.R175K	ENST00000380871	NM_006167.3	175	aGa/aAa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117869637	117869637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	175	541	0	ENST00000297338.2:c.557C>T	p.Thr186Ile	p.T186I	ENST00000297338	NM_006265.2	186	aCt/aTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0041875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	191	547	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0041942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	101	564	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0041942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	28	267	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435101	56435101	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	129	568	0	ENST00000407977.2:c.2036del	p.Gln679ArgfsTer21	p.Q679Rfs*21	ENST00000407977		679	cAg/cg																																																																														
STK11	6794	MSKCC	GRCh37	19	1220489	1220489	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786202134		P-0041942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	36	666	0	ENST00000326873.7:c.582C>G	p.Asp194Glu	p.D194E	ENST00000326873	NM_000455.4	194	gaC/gaG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	342	783	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	631	440	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864884	117864884	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	93	437	0	ENST00000297338.2:c.1225G>T	p.Glu409Ter	p.E409*	ENST00000297338	NM_006265.2	409	Gag/Tag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023241	150023241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	79	412	0	ENST00000253339.5:c.22G>A	p.Glu8Lys	p.E8K	ENST00000253339		8	Gaa/Aaa																																																																														
PARP1	142	MSKCC	GRCh37	1	226555202	226555202	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	101	477	0	ENST00000366794.5:c.2385G>C	p.Glu795Asp	p.E795D	ENST00000366794	NM_001618.3	795	gaG/gaC																																																																														
FLT1	2321	MSKCC	GRCh37	13	28963991	28963991	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	161	338	0	ENST00000282397.4:c.1911A>T	p.Arg637Ser	p.R637S	ENST00000282397	NM_002019.4	637	agA/agT																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716361	52716361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	150	659	0	ENST00000322088.6:c.805G>A	p.Glu269Lys	p.E269K	ENST00000322088	NM_014225.5	269	Gag/Aag																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748585	43748585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	456	426	2	ENST00000523873.1:c.539G>A	p.Gly180Asp	p.G180D	ENST00000523873		180	gGc/gAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257321	16257322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	111	518	0	ENST00000375759.3:c.4592dup	p.Leu1531PhefsTer7	p.L1531Ffs*7	ENST00000375759	NM_015001.2	1529	cgt/cgTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261772	16261772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	147	520	0	ENST00000375759.3:c.9037G>C	p.Val3013Leu	p.V3013L	ENST00000375759	NM_015001.2	3013	Gtc/Ctc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	20	53	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935356	36935356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	50	685	0	ENST00000361632.4:c.1371G>T	p.Gln457His	p.Q457H	ENST00000361632		457	caG/caT																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941011	36941011	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	173	652	0	ENST00000361632.4:c.328C>T	p.Gln110Ter	p.Q110*	ENST00000361632		110	Cag/Tag																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681327	88681327	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780107		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	78	390	1	ENST00000372037.3:c.1217G>A	p.Arg406His	p.R406H	ENST00000372037	NM_004329.2	406	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692874	89692874	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786204930		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	76	252	0	ENST00000371953.3:c.358G>A	p.Ala120Thr	p.A120T	ENST00000371953	NM_000314.4	120	Gca/Aca																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	216	371	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239421	123239421	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764959117		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	34	420	0	ENST00000358487.5:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000358487	NM_000141.4	806	Gaa/Aaa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195499	102195499	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	102	381	0	ENST00000263464.3:c.263del	p.Lys88SerfsTer12	p.K88Sfs*12	ENST00000263464	NM_001165.4	87	Aaa/aa																																																																														
ATM	472	MSKCC	GRCh37	11	108098418	108098418	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs746235533		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	50	260	0	ENST00000278616.4:c.67C>T	p.Arg23Ter	p.R23*	ENST00000278616	NM_000051.3	23	Cga/Tga																																																																														
CBL	867	MSKCC	GRCh37	11	119170378	119170378	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	87	369	0	ENST00000264033.4:c.2608T>G	p.Ser870Ala	p.S870A	ENST00000264033	NM_005188.3	870	Tcc/Gcc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112353	115112353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	53	139	0	ENST00000257566.3:c.1387G>T	p.Ala463Ser	p.A463S	ENST00000257566	NM_016569.3	463	Gcg/Tcg																																																																														
B2M	567	MSKCC	GRCh37	15	45007896	45007897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	76	256	0	ENST00000558401.1:c.346+1dup		p.W115fs	ENST00000558401	NM_004048.2	115	tgg/tGgg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222251	2222251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	223	792	1	ENST00000326181.6:c.535G>A	p.Glu179Lys	p.E179K	ENST00000326181	NM_032271.2	179	Gag/Aag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89828358	89828358	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs755546887		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	103	387	0	ENST00000389301.3:c.2851C>T	p.Arg951Trp	p.R951W	ENST00000389301	NM_000135.2	951	Cgg/Tgg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89858352	89858352	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762736991		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	143	502	0	ENST00000389301.3:c.1208C>T	p.Ala403Val	p.A403V	ENST00000389301	NM_000135.2	403	gCg/gTg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	140	550	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
NF1	4763	MSKCC	GRCh37	17	29486050	29486050	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1438566555		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	50	238	0	ENST00000358273.4:c.233del	p.Asn78IlefsTer7	p.N78Ifs*7	ENST00000358273	NM_001042492.2	76	gAa/ga																																																																														
NF1	4763	MSKCC	GRCh37	17	29552152	29552152	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199474738		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	54	255	0	ENST00000358273.4:c.1885G>A	p.Gly629Arg	p.G629R	ENST00000358273	NM_001042492.2	629	Ggg/Agg																																																																														
NF1	4763	MSKCC	GRCh37	17	29663652	29663652	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	65	269	0	ENST00000358273.4:c.6148-1G>T		p.X2050_splice	ENST00000358273	NM_001042492.2	2050																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264357	30264357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	31	129	0	ENST00000322652.5:c.92T>C	p.Val31Ala	p.V31A	ENST00000322652	NM_015355.2	31	gTg/gCg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881082	37881082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	175	760	0	ENST00000269571.5:c.2411G>A	p.Gly804Asp	p.G804D	ENST00000269571		804	gGc/gAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883774	37883774	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	203	759	2	ENST00000269571.5:c.3391del	p.Leu1131Ter	p.L1131*	ENST00000269571		1129	gCc/gc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40500498	40500498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	136	501	0	ENST00000264657.5:c.37C>T	p.Arg13Trp	p.R13W	ENST00000264657	NM_139276.2	13	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	147	715	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740836	58740836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs747668756		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	133	469	1	ENST00000305921.3:c.1741C>T	p.Arg581Ter	p.R581*	ENST00000305921	NM_003620.3	581	Cga/Tga																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78865613	78865613	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752600548		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	154	441	1	ENST00000306801.3:c.2077G>A	p.Ala693Thr	p.A693T	ENST00000306801	NM_020761.2	693	Gcc/Acc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1611735	1611735	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375296938		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	186	665	0	ENST00000344749.5:c.1927G>A	p.Glu643Lys	p.E643K	ENST00000344749	NM_001136139.2	643	Gaa/Aaa																																																																														
CARM1	10498	MSKCC	GRCh37	19	11030355	11030355	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	112	477	0	ENST00000327064.4:c.1105A>G	p.Arg369Gly	p.R369G	ENST00000327064	NM_199141.1	369	Agg/Ggg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285135	15285135	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184438857		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	198	733	0	ENST00000263388.2:c.4480G>A	p.Gly1494Ser	p.G1494S	ENST00000263388	NM_000435.2	1494	Ggc/Agc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965520	18965520	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	153	607	0	ENST00000262803.5:c.1265+2T>C		p.X422_splice	ENST00000262803	NM_002911.3	422																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214714	36214714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774265693		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	94	559	0	ENST00000222270.7:c.3140G>A	p.Arg1047Gln	p.R1047Q	ENST00000222270	NM_014727.1	1047	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214866	36214866	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	232	783	0	ENST00000222270.7:c.3296del	p.Gly1099AlafsTer83	p.G1099Afs*83	ENST00000222270	NM_014727.1	1098	Ggg/gg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753602	42753602	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779162156		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	166	807	0	ENST00000222329.4:c.662C>T	p.Pro221Leu	p.P221L	ENST00000222329	NM_006494.2	221	cCg/cTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	196	845	0	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25536786	25536786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1174462913		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	176	554	0	ENST00000264709.3:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000264709	NM_175629.2	23	cGa/cAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26022316	26022316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	129	519	0	ENST00000435504.4:c.341G>A	p.Ser114Asn	p.S114N	ENST00000435504		114	aGc/aAc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47596650	47596651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	60	178	0	ENST00000263735.4:c.11dup	p.Gln5AlafsTer26	p.Q5Afs*26	ENST00000263735	NM_002354.2	2	-/C																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656889	47656889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	35	91	0	ENST00000233146.2:c.1085T>C	p.Leu362Ser	p.L362S	ENST00000233146	NM_000251.2	362	tTa/tCa																																																																														
CASP8	841	MSKCC	GRCh37	2	202131411	202131411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs777784105		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	133	442	0	ENST00000358485.4:c.379C>T	p.Arg127Ter	p.R127*	ENST00000358485	NM_001080125.1	127	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570063	212570063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746784831		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	96	325	0	ENST00000342788.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000342788	NM_005235.2	393	cGg/cAg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	109	299	6	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735460	40735460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	177	582	0	ENST00000373198.4:c.3413T>G	p.Leu1138Arg	p.L1138R	ENST00000373198	NM_133170.3	1138	cTc/cGc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45651187	45651187	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs749300015		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	154	494	0	ENST00000407780.3:c.838C>T	p.Arg280Ter	p.R280*	ENST00000407780	NM_001283052.1	280	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	74	287	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438494	52438494	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756443059		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	152	504	0	ENST00000460680.1:c.1225G>A	p.Val409Met	p.V409M	ENST00000460680	NM_004656.3	409	Gtg/Atg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52662971	52662971	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755190183		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	116	324	0	ENST00000394830.3:c.1382G>A	p.Arg461His	p.R461H	ENST00000394830	NM_018313.4	461	cGc/cAc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247442	71247442	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750746668		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	159	542	0	ENST00000318789.4:c.91G>A	p.Gly31Ser	p.G31S	ENST00000318789	NM_032682.5	31	Ggt/Agt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468397	89468398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1467832547		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	49	237	1	ENST00000336596.2:c.1938dup	p.Glu647ArgfsTer7	p.E647Rfs*7	ENST00000336596	NM_005233.5	644	tca/tcAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468402	89468405	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	40	246	0	ENST00000336596.2:c.1937_1940del	p.Lys646ArgfsTer9	p.K646Rfs*9	ENST00000336596	NM_005233.5	646	AAAGag/ag																																																																														
ATR	545	MSKCC	GRCh37	3	142172034	142172034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	100	384	0	ENST00000350721.4:c.7697G>A	p.Ser2566Asn	p.S2566N	ENST00000350721	NM_001184.3	2566	aGt/aAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	41	496	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
BCL6	604	MSKCC	GRCh37	3	187446890	187446890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753955082		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	206	721	0	ENST00000232014.4:c.1303G>A	p.Gly435Arg	p.G435R	ENST00000232014	NM_001130845.1	435	Ggg/Agg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197772	66197772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	72	312	0	ENST00000273854.3:c.2927C>T	p.Ala976Val	p.A976V	ENST00000273854	NM_004439.5	976	gCa/gTa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	73	254	2	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	121	302	1	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1254597	1254597	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1418488828		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	138	598	0	ENST00000310581.5:c.3181G>A	p.Ala1061Thr	p.A1061T	ENST00000310581	NM_198253.2	1061	Gcc/Acc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	77	262	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	191	481	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86648999	86648999	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	62	243	1	ENST00000274376.6:c.1279C>T	p.Arg427Ter	p.R427*	ENST00000274376	NM_002890.2	427	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	51	183	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	91	333	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	72	314	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
RAD50	10111	MSKCC	GRCh37	5	131930612	131930612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	72	287	0	ENST00000265335.6:c.1849del	p.Arg617GlufsTer26	p.R617Efs*26	ENST00000265335		615	ctA/ct																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057785	180057786	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	92	444	0	ENST00000261937.6:c.169dup	p.Leu57ProfsTer80	p.L57Pfs*80	ENST00000261937	NM_182925.4	57	ctc/cCtc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163855	32163855	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	131	458	1	ENST00000375023.3:c.5371del	p.Ala1791GlnfsTer11	p.A1791Qfs*11	ENST00000375023	NM_004557.3	1791	Gca/ca																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	383	783	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521922	157521922	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	47	527	0	ENST00000346085.5:c.4195del	p.Gln1399SerfsTer49	p.Q1399Sfs*49	ENST00000346085	NM_020732.3	1398	agC/ag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521932	157521932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	50	545	0	ENST00000346085.5:c.4204G>A	p.Glu1402Lys	p.E1402K	ENST00000346085	NM_020732.3	1402	Gag/Aag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	162	698	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987341	2987341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	173	528	1	ENST00000396946.4:c.88C>T	p.Arg30Trp	p.R30W	ENST00000396946	NM_032415.4	30	Cgg/Tgg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511073	148511073	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	32	268	0	ENST00000320356.2:c.1829G>C	p.Ser610Thr	p.S610T	ENST00000320356	NM_004456.4	610	aGt/aCt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845550	151845550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753793539		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	142	535	1	ENST00000262189.6:c.13462G>A	p.Ala4488Thr	p.A4488T	ENST00000262189	NM_170606.2	4488	Gcc/Acc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	101	356	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006029	22006029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	115	512	0	ENST00000276925.6:c.374A>G	p.His125Arg	p.H125R	ENST00000276925	NM_004936.3	125	cAc/cGc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772921	135772921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	174	424	0	ENST00000298552.3:c.2702G>T	p.Arg901Met	p.R901M	ENST00000298552	NM_001162426.1	901	aGg/aTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413115	139413115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	233	805	2	ENST00000277541.6:c.1027G>A	p.Ala343Thr	p.A343T	ENST00000277541	NM_017617.3	343	Gcc/Acc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	152	572	0	ENST00000378444.4:c.3621del	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	152	645	1	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																														
AR	367	MSKCC	GRCh37	X	66765242	66765243	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA	rs754644993		P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	75	440	0	ENST00000374690.3:c.271_273dup	p.Gln91dup	p.Q91dup	ENST00000374690	NM_000044.3	91	agg/agGCAg																																																																														
MED12	9968	MSKCC	GRCh37	X	70353057	70353057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	35	410	0	ENST00000374080.3:c.4612A>G	p.Asn1538Asp	p.N1538D	ENST00000374080		1538	Aac/Gac																																																																														
ATRX	546	MSKCC	GRCh37	X	76814283	76814283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	70	273	0	ENST00000373344.5:c.6361T>C	p.Ser2121Pro	p.S2121P	ENST00000373344	NM_000489.3	2121	Tct/Cct																																																																														
ATRX	546	MSKCC	GRCh37	X	76938229	76938230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	97	508	3	ENST00000373344.5:c.2518dup	p.Arg840LysfsTer9	p.R840Kfs*9	ENST00000373344	NM_000489.3	840	aga/aAga																																																																														
MYC	4609	MSKCC	GRCh37	8	128752965	128752965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	162	602	0	ENST00000377970.2:c.1126G>C	p.Val376Leu	p.V376L	ENST00000377970	NM_002467.4	376	Gtc/Ctc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198263228	198263228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	27	436	0	ENST00000335508.6:c.3091G>T	p.Val1031Leu	p.V1031L	ENST00000335508	NM_012433.2	1031	Gta/Tta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	40	531	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519995		P-0042085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	47	848	1	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879810	37879810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	52	745	0	ENST00000269571.5:c.2105C>G	p.Pro702Arg	p.P702R	ENST00000269571		702	cCt/cGt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430599	181430599	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	39	817	0	ENST00000325404.1:c.451G>C	p.Ala151Pro	p.A151P	ENST00000325404	NM_003106.3	151	Gcg/Ccg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0042213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	127	240	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023756	27023756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	343	476	0	ENST00000324856.7:c.862C>T	p.Gln288Ter	p.Q288*	ENST00000324856	NM_006015.4	288	Cag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1226534	1226534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs558040549		P-0042213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	500	876	0	ENST00000326873.7:c.1190C>T	p.Ala397Val	p.A397V	ENST00000326873	NM_000455.4	397	gCg/gTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702606	52702606	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	198	405	0	ENST00000394830.3:c.292del	p.Gln98AsnfsTer4	p.Q98Nfs*4	ENST00000394830	NM_018313.4	98	Caa/aa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805991	32805991	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	245	925	0	ENST00000374899.4:c.20G>C	p.Arg7Thr	p.R7T	ENST00000374899	NM_018833.2	7	aGa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	30	368	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0042251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	14	252	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522740	67522741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	28	308	0	ENST00000274335.5:c.244dup	p.Ile82AsnfsTer24	p.I82Nfs*24	ENST00000274335		79	-/A																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519010	103519010	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	197	428	0	ENST00000355739.4:c.2348A>G	p.Tyr783Cys	p.Y783C	ENST00000355739	NM_000123.3	783	tAc/tGc																																																																														
MGA	23269	MSKCC	GRCh37	15	42054341	42054343	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0042282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	29	317	0	ENST00000219905.7:c.7527_7529del	p.Val2510del	p.V2510del	ENST00000219905	NM_001164273.1	2509	GTG/-																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111921756	111921756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	116	443	0	ENST00000393256.3:c.546del	p.Ile183SerfsTer59	p.I183Sfs*59	ENST00000393256	NM_006538.4	182	gTt/gt																																																																														
EP300	2033	MSKCC	GRCh37	22	41573999	41574011	+	frameshift_variant	Frame_Shift_Del	DEL	CTAATCCACAACC	CTAATCCACAACC	-			P-0042282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	95	622	0	ENST00000263253.7:c.6285_6297del	p.Asn2096SerfsTer34	p.N2096Sfs*34	ENST00000263253	NM_001429.3	2095	tCTAATCCACAACCc/tc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576798	67576799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0042282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	14	364	0	ENST00000274335.5:c.883_884dup	p.Thr296GlnfsTer23	p.T296Qfs*23	ENST00000274335		294	atc/aTCtc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94219252	94219252	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	55	269	0	ENST00000323929.3:c.154-2A>T		p.X52_splice	ENST00000323929	NM_005591.3	52																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121426769	121426769	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	183	735	1	ENST00000257555.6:c.460A>G	p.Met154Val	p.M154V	ENST00000257555		154	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	162	633	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29654535	29654535	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	80	260	0	ENST00000358273.4:c.5287C>T	p.Gln1763Ter	p.Q1763*	ENST00000358273	NM_001042492.2	1763	Caa/Taa																																																																														
INHA	3623	MSKCC	GRCh37	2	220437359	220437360	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	74	701	0	ENST00000243786.2:c.266_267dup	p.Asp90GlnfsTer38	p.D90Qfs*38	ENST00000243786	NM_002191.3	88	gcc/gcCAc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685209	86685209	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	46	190	0	ENST00000274376.6:c.2926-1G>C		p.X976_splice	ENST00000274376	NM_002890.2	976																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225588	26225588	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	139	415	0	ENST00000360408.1:c.206A>T	p.Gln69Leu	p.Q69L	ENST00000360408	NM_003532.2	69	cAg/cTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100080	157100094	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCCGC	GGCGGCGGCGGCCGC	-	rs775733700		P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	34	34	0	ENST00000346085.5:c.1029_1043del	p.Ala346_Ala350del	p.A346_A350del	ENST00000346085	NM_020732.3	339	gtGGCGGCGGCGGCCGCg/gtg																																																																														
PARK2	0	MSKCC	GRCh37	6	162475160	162475160	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	44	424	0	ENST00000366898.1:c.581del	p.Gly194ValfsTer31	p.G194Vfs*31	ENST00000366898	NM_004562.2	194	gGt/gt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513160	106513160	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0042313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	49	227	0	ENST00000359195.3:c.2064C>A	p.Asn688Lys	p.N688K	ENST00000359195	NM_002649.2	688	aaC/aaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	130	358	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2974245	2974245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	227	628	0	ENST00000396946.4:c.1360C>A	p.Pro454Thr	p.P454T	ENST00000396946	NM_032415.4	454	Cca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0042407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	548	832	2	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052945	180052945	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760476680		P-0042407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	856	1066	2	ENST00000261937.6:c.1345G>A	p.Gly449Arg	p.G449R	ENST00000261937	NM_182925.4	449	Ggg/Agg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425124	49425124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372839823		P-0042407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	154	991	1	ENST00000301067.7:c.13364G>A	p.Arg4455His	p.R4455H	ENST00000301067	NM_003482.3	4455	cGc/cAc																																																																														
WT1	7490	MSKCC	GRCh37	11	32421589	32421589	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0042407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	232	507	0	ENST00000332351.3:c.1003C>G	p.His335Asp	p.H335D	ENST00000332351	NM_024426.4	335	Cac/Gac																																																																														
FLT1	2321	MSKCC	GRCh37	13	28959024	28959024	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0042407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	55	347	0	ENST00000282397.4:c.2114C>G	p.Pro705Arg	p.P705R	ENST00000282397	NM_002019.4	705	cCt/cGt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437194	52437194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	150	839	0	ENST00000460680.1:c.1850G>C	p.Arg617Thr	p.R617T	ENST00000460680	NM_004656.3	617	aGg/aCg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500492	149500492	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1184721015		P-0042407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	109	819	0	ENST00000261799.4:c.2545C>G	p.Arg849Gly	p.R849G	ENST00000261799	NM_002609.3	849	Cga/Gga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004244	150004244	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	98	341	0	ENST00000253339.5:c.1981A>G	p.Lys661Glu	p.K661E	ENST00000253339		661	Aaa/Gaa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593597	55593611	+	inframe_deletion	In_Frame_Del	DEL	GTACAGTGGAAGGTT	GTACAGTGGAAGGTT	-			P-0042490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	96	432	0	ENST00000288135.5:c.1665_1679del	p.Gln556_Val560del	p.Q556_V560del	ENST00000288135	NM_000222.2	555	GTACAGTGGAAGGTT/-																																																																														
TP63	8626	MSKCC	GRCh37	3	189590736	189590736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs558374141		P-0042490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	263	597	1	ENST00000264731.3:c.1301C>T	p.Thr434Met	p.T434M	ENST00000264731	NM_003722.4	434	aCg/aTg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49929233	49929233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	383	838	0	ENST00000296474.3:c.3310C>G	p.Gln1104Glu	p.Q1104E	ENST00000296474	NM_002447.2	1104	Cag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178941910	178941910	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	157	453	0	ENST00000263967.3:c.2229T>G	p.Asp743Glu	p.D743E	ENST00000263967	NM_006218.2	743	gaT/gaG																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	72	955	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591924	48591924	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs377767348		P-0042497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	30	483	0	ENST00000342988.3:c.1087T>C	p.Cys363Arg	p.C363R	ENST00000342988	NM_005359.5	363	Tgt/Cgt																																																																														
ABL1	25	MSKCC	GRCh37	9	133738360	133738360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	66	655	0	ENST00000318560.5:c.760G>A	p.Gly254Arg	p.G254R	ENST00000318560	NM_005157.4	254	Ggg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0042497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	77	576	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112926910	112926910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	25	674	1	ENST00000351677.2:c.1530G>T	p.Gln510His	p.Q510H	ENST00000351677	NM_002834.3	510	caG/caT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377157	118377157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	71	472	1	ENST00000534358.1:c.10550G>A	p.Gly3517Asp	p.G3517D	ENST00000534358	NM_005933.3	3517	gGt/gAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211207	36211207	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1349	101	1240	0	ENST00000222270.7:c.958T>C	p.Ser320Pro	p.S320P	ENST00000222270	NM_014727.1	320	Tcc/Ccc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169988294	169988294	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	39	440	0	ENST00000295797.4:c.536A>G	p.His179Arg	p.H179R	ENST00000295797	NM_002740.5	179	cAt/cGt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138584	55138584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	45	572	0	ENST00000257290.5:c.1261G>A	p.Val421Ile	p.V421I	ENST00000257290	NM_006206.4	421	Gtc/Atc																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0042506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	104	652	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																														
BLM	641	MSKCC	GRCh37	15	91312737	91312737	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1319281718		P-0042506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	64	432	0	ENST00000355112.3:c.2476G>T	p.Val826Leu	p.V826L	ENST00000355112	NM_000057.2	826	Gtg/Ttg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801028	1801028	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	98	1076	0	ENST00000260795.2:c.157A>C	p.Ser53Arg	p.S53R	ENST00000260795		53	Agc/Cgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	79	342	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624272	89624273	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	31	375	0	ENST00000371953.3:c.47dup	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	tat/tAat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876660821		P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	47	687	0	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857680	9857680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1303700994		P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	55	402	1	ENST00000330684.3:c.3721C>T	p.Arg1241Trp	p.R1241W	ENST00000330684	NM_001134407.1	1241	Cgg/Tgg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362230	40362230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	63	462	0	ENST00000293328.3:c.1865C>T	p.Ser622Leu	p.S622L	ENST00000293328	NM_012448.3	622	tCa/tTa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085828	16085828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	32	524	0	ENST00000281043.3:c.1004C>T	p.Pro335Leu	p.P335L	ENST00000281043	NM_005378.4	335	cCc/cTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249522	153249522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	56	382	0	ENST00000281708.4:c.1256G>A	p.Gly419Glu	p.G419E	ENST00000281708	NM_033632.3	419	gGa/gAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241673	55241673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	329	654	0	ENST00000275493.2:c.2121G>T	p.Leu707Phe	p.L707F	ENST00000275493	NM_005228.3	707	ttG/ttT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0042605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	228	489	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0042605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	113	621	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039709	47039709	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0042605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	117	916	0	ENST00000329236.7:c.926+1G>T		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																															
TBX3	6926	MSKCC	GRCh37	12	115110025	115110025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	74	899	0	ENST00000257566.3:c.1853C>T	p.Ala618Val	p.A618V	ENST00000257566	NM_016569.3	618	gCa/gTa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170011204	170011204	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	77	569	0	ENST00000295797.4:c.1325T>G	p.Leu442Arg	p.L442R	ENST00000295797	NM_002740.5	442	cTc/cGc																																																																														
MET	4233	MSKCC	GRCh37	7	116411883	116411905	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTTTCTCTCTGTTTTAAGATC	TTCTTTCTCTCTGTTTTAAGATC	-			P-0042607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	163	1005	0	ENST00000397752.3:c.2888-19_2891del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
CDKN2C	1031	MSKCC	GRCh37	1	51439658	51439658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	47	428	0	ENST00000262662.1:c.223C>T	p.His75Tyr	p.H75Y	ENST00000262662		75	Cat/Tat																																																																														
MRE11A	0	MSKCC	GRCh37	11	94201040	94201040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	26	394	0	ENST00000323929.3:c.1037A>G	p.Asn346Ser	p.N346S	ENST00000323929	NM_005591.3	346	aAt/aGt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026215	48026215	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	21	376	0	ENST00000234420.5:c.1093T>A	p.Trp365Arg	p.W365R	ENST00000234420	NM_000179.2	365	Tgg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0042613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	23	925	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0042613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	41	1021	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100301	157100301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	17	352	2	ENST00000346085.5:c.1238C>T	p.Ser413Leu	p.S413L	ENST00000346085	NM_020732.3	413	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0042616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	450	754	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0042616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	305	462	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086010	16086010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	427	671	1	ENST00000281043.3:c.1186G>A	p.Asp396Asn	p.D396N	ENST00000281043	NM_005378.4	396	Gac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821903	72821903	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs749869759		P-0042616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	51	315	0	ENST00000268489.5:c.10272G>C	p.Gln3424His	p.Q3424H	ENST00000268489	NM_006885.3	3424	caG/caC																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021728	71021728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	50	402	0	ENST00000318789.4:c.1630C>G	p.Arg544Gly	p.R544G	ENST00000318789	NM_032682.5	544	Cga/Gga																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522606	176522606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	435	1038	3	ENST00000292408.4:c.1703C>T	p.Pro568Leu	p.P568L	ENST00000292408	NM_213647.1	568	cCa/cTa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221666	36221666	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	117	978	0	ENST00000222270.7:c.5335C>T	p.Arg1779Ter	p.R1779*	ENST00000222270	NM_014727.1	1779	Cga/Tga																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600505	10600505	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	331	781	0	ENST00000171111.5:c.1350G>A	p.Trp450Ter	p.W450*	ENST00000171111	NM_203500.1	450	tgG/tgA																																																																														
TOP1	7150	MSKCC	GRCh37	20	39744952	39744952	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	128	496	0	ENST00000361337.2:c.1742T>C	p.Met581Thr	p.M581T	ENST00000361337	NM_003286.2	581	aTg/aCg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946129	13946129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	127	596	0	ENST00000405192.2:c.967G>C	p.Asp323His	p.D323H	ENST00000405192	NM_001163147.1	323	Gat/Cat																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729640	41729640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	142	646	0	ENST00000242208.4:c.889G>C	p.Ala297Pro	p.A297P	ENST00000242208	NM_002192.2	297	Gcc/Ccc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8436641	8436641	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	36	554	0	ENST00000356435.5:c.4037T>A	p.Ile1346Asn	p.I1346N	ENST00000356435		1346	aTt/aAt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085677	16085677	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779959007		P-0042664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	203	643	0	ENST00000281043.3:c.853C>T	p.Arg285Trp	p.R285W	ENST00000281043	NM_005378.4	285	Cgg/Tgg																																																																														
RECQL	5965	MSKCC	GRCh37	12	21627818	21627818	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	156	603	0	ENST00000421138.2:c.1312C>T	p.Gln438Ter	p.Q438*	ENST00000421138		438	Cag/Tag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47635695	47635695	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs267607924		P-0042664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	59	361	0	ENST00000233146.2:c.366+1G>A		p.X122_splice	ENST00000233146	NM_000251.2	122																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174386	11174386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	108	487	0	ENST00000361445.4:c.7289G>T	p.Arg2430Met	p.R2430M	ENST00000361445	NM_004958.3	2430	aGg/aTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161740	47161741	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0042697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	54	271	0	ENST00000409792.3:c.4385_4386del	p.Glu1462ValfsTer12	p.E1462Vfs*12	ENST00000409792	NM_014159.6	1462	gAA/g																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439929	52439929	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0042697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	81	378	0	ENST00000460680.1:c.784-1G>T		p.X262_splice	ENST00000460680	NM_004656.3	262																																																																															
SETD2	29072	MSKCC	GRCh37	3	47058423	47058659	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	TTTTGTGGCCTTCAGTTGACATCTGCAGGGTTGAATTCCCCAGGGTGATGTATCATCAGTAGCACAGTGCTGACAGGGGTGGGACAGAAAGGCCCACAGGATTTCCTCTCCCTAGAGTCTGTCTTACCTGACCACCCATCCTCCCACCCTGGCCCAACAGTCACTCTAATTCAGTGTCCTCTTTGGGTTTGTAAACAGCCCCAAACTTCTGCATGTACTTCTTAATGTACTCCTTGG	TTTTGTGGCCTTCAGTTGACATCTGCAGGGTTGAATTCCCCAGGGTGATGTATCATCAGTAGCACAGTGCTGACAGGGGTGGGACAGAAAGGCCCACAGGATTTCCTCTCCCTAGAGTCTGTCTTACCTGACCACCCATCCTCCCACCCTGGCCCAACAGTCACTCTAATTCAGTGTCCTCTTTGGGTTTGTAAACAGCCCCAAACTTCTGCATGTACTTCTTAATGTACTCCTTGG	-			P-0042755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	25	102	0	ENST00000409792.3:c.7619_*160del		p.*2540*	ENST00000409792	NM_014159.6	2540																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	41	490	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	91	507	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	92	759	2	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1400980130		P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	20	507	2	ENST00000264010.4:c.2070del	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	30	461	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524464	187524464	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs74511500		P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	14	584	1	ENST00000441802.2:c.11216C>T	p.Ala3739Val	p.A3739V	ENST00000441802	NM_005245.3	3739	gCg/gTg																																																																														
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	38	508	0	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	50	572	3	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656840	45656840	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	69	616	1	ENST00000407780.3:c.316del	p.Gln106ArgfsTer11	p.Q106Rfs*11	ENST00000407780	NM_001283052.1	106	Cag/ag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290896	15290896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	19	779	1	ENST00000263388.2:c.3314del	p.Gly1105AlafsTer167	p.G1105Afs*167	ENST00000263388	NM_000435.2	1105	gGc/gc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912133	50912133	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768773535		P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	36	740	3	ENST00000440232.2:c.1867C>T	p.Arg623Trp	p.R623W	ENST00000440232	NM_002691.3	623	Cgg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273878	10273878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	63	681	0	ENST00000330684.3:c.391G>A	p.Ala131Thr	p.A131T	ENST00000330684	NM_001134407.1	131	Gca/Aca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993776	72993776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200056605		P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	50	570	0	ENST00000268489.5:c.269G>A	p.Ser90Asn	p.S90N	ENST00000268489	NM_006885.3	90	aGc/aAc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681326	88681326	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781332		P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	24	383	0	ENST00000372037.3:c.1216C>T	p.Arg406Cys	p.R406C	ENST00000372037	NM_004329.2	406	Cgc/Tgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467170	25467170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	39	565	0	ENST00000264709.3:c.1705C>T	p.Pro569Ser	p.P569S	ENST00000264709	NM_175629.2	569	Ccg/Tcg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101701	27101733	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAAGACATTGGTAAGGAGATCTTCCTCATTCG	GAAAGACATTGGTAAGGAGATCTTCCTCATTCG	-			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	60	716	0	ENST00000324856.7:c.4984_4993+23del		p.X1662_splice	ENST00000324856	NM_006015.4	1662																																																																															
SDHC	6391	MSKCC	GRCh37	1	161332126	161332126	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	11	133	0	ENST00000367975.2:c.413A>G	p.Asp138Gly	p.D138G	ENST00000367975	NM_003001.3	138	gAc/gGc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351031	89351031	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	70	755	0	ENST00000301030.4:c.1919del	p.Asn640ThrfsTer13	p.N640Tfs*13	ENST00000301030	NM_001256183.1	640	aAc/ac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882974	89882974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1326963514		P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	11	280	2	ENST00000389301.3:c.50G>A	p.Gly17Asp	p.G17D	ENST00000389301	NM_000135.2	17	gGc/gAc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39637928	39637928	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	47	573	0	ENST00000262039.4:c.2345A>G	p.Glu782Gly	p.E782G	ENST00000262039	NM_002647.2	782	gAa/gGa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602767	10602767	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	22	779	0	ENST00000171111.5:c.811del	p.Val271CysfsTer6	p.V271Cfs*6	ENST00000171111	NM_203500.1	271	Gtg/tg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229048	36229048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866415691		P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	83	779	1	ENST00000222270.7:c.7828C>T	p.Arg2610Cys	p.R2610C	ENST00000222270	NM_014727.1	2610	Cgc/Tgc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912404	50912405	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	13	729	0	ENST00000440232.2:c.1923dup	p.Thr642HisfsTer97	p.T642Hfs*97	ENST00000440232	NM_002691.3	640	acc/aCcc																																																																														
EP300	2033	MSKCC	GRCh37	22	41572441	41572441	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	45	862	0	ENST00000263253.7:c.4970A>C	p.Glu1657Ala	p.E1657A	ENST00000263253	NM_001429.3	1657	gAg/gCg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1962803	1962803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	13	523	0	ENST00000382895.3:c.3297G>T	p.Glu1099Asp	p.E1099D	ENST00000382895	NM_133330.2	1099	gaG/gaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1280373	1280373	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	13	716	0	ENST00000310581.5:c.1850T>C	p.Leu617Pro	p.L617P	ENST00000310581	NM_198253.2	617	cTg/cCg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497269	149497269	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1428098106		P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	19	771	0	ENST00000261799.4:c.3049G>T	p.Gly1017Cys	p.G1017C	ENST00000261799	NM_002609.3	1017	Ggt/Tgt																																																																														
NBN	4683	MSKCC	GRCh37	8	90990542	90990542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	30	400	1	ENST00000265433.3:c.490G>A	p.Ala164Thr	p.A164T	ENST00000265433	NM_002485.4	164	Gca/Aca																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015169	37015169	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	13	569	0	ENST00000358127.4:c.235A>G	p.Lys79Glu	p.K79E	ENST00000358127	NM_001280556.1	79	Aag/Gag																																																																														
ATRX	546	MSKCC	GRCh37	X	76763897	76763897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	12	639	0	ENST00000373344.5:c.7411C>T	p.Pro2471Ser	p.P2471S	ENST00000373344	NM_000489.3	2471	Cca/Tca																																																																														
KIT	3815	MSKCC	GRCh37	4	55593613	55593613	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913521		P-0042799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	11	404	0	ENST00000288135.5:c.1679T>G	p.Val560Gly	p.V560G	ENST00000288135	NM_000222.2	560	gTt/gGt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18971733	18971733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	174	1053	0	ENST00000262803.5:c.2399G>T	p.Arg800Leu	p.R800L	ENST00000262803	NM_002911.3	800	cGc/cTc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926248	112926249	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GC	GC	AA			P-0042799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	84	672	3	ENST00000351677.2:c.1381_1382delinsAA	p.Ala461Asn	p.A461N	ENST00000351677	NM_002834.3	461	GCt/AAt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602728	10602728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	235	1116	0	ENST00000171111.5:c.850C>G	p.Gln284Glu	p.Q284E	ENST00000171111	NM_203500.1	284	Cag/Gag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053523	37053523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	135	599	0	ENST00000231790.2:c.610G>T	p.Val204Phe	p.V204F	ENST00000231790	NM_000249.3	204	Gtt/Ttt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443814	52443856	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CATCCGGCCTCCCCAGCCCCTGGCCCTCCCGGTCCCCTCCTCA	CATCCGGCCTCCCCAGCCCCTGGCCCTCCCGGTCCCCTCCTCA	-			P-0042799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	55	987	0	ENST00000460680.1:c.37+2_37+44del		p.X13_splice	ENST00000460680	NM_004656.3	13																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	277	638	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	295	356	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	106	175	1	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
NUF2	83540	MSKCC	GRCh37	1	163318764	163318764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	33	329	0	ENST00000271452.3:c.1154G>C	p.Gly385Ala	p.G385A	ENST00000271452	NM_145697.2	385	gGt/gCt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982145	201982146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCAAGC			P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	346	787	0	ENST00000359651.3:c.670_676dup	p.Leu226ArgfsTer11	p.L226Rfs*11	ENST00000359651		223	-/GGCAAGC																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123829	46123829	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	49	271	0	ENST00000334344.6:c.95C>A	p.Ser32Ter	p.S32*	ENST00000334344	NM_152641.2	32	tCg/tAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243977	46243977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	143	393	0	ENST00000334344.6:c.2071C>G	p.His691Asp	p.H691D	ENST00000334344	NM_152641.2	691	Cat/Gat																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573598	48573598	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	118	259	0	ENST00000342988.3:c.182T>A	p.Ile61Lys	p.I61K	ENST00000342988	NM_005359.5	61	aTa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	95	499	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0042856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	464	1080	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519786		P-0042856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	222	1171	0	ENST00000377045.4:c.641C>T	p.Ser214Phe	p.S214F	ENST00000377045	NM_001654.4	214	tCc/tTc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514821	103514821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112825485		P-0042856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	76	491	0	ENST00000355739.4:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000355739	NM_000123.3	441	cCg/cTg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36938202	36938202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	165	1043	0	ENST00000361632.4:c.759G>A	p.Trp253Ter	p.W253*	ENST00000361632		253	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	204	627	0	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	204	627	0	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	204	627	0	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0042866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	587	1112	0	ENST00000269305.4:c.309C>G	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taG																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857584	9857584	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	113	610	0	ENST00000330684.3:c.3817C>T	p.Gln1273Ter	p.Q1273*	ENST00000330684	NM_001134407.1	1273	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0042876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	9	204	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	50	361	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39322755	39322755	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0042876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	23	355	0	ENST00000373001.3:c.238-1G>T		p.X80_splice	ENST00000373001	NM_022157.3	80																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36986739	36986740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	12	99	0	ENST00000354822.5:c.949dup	p.Gln317ProfsTer122	p.Q317Pfs*122	ENST00000354822	NM_001079668.2	317	cag/cCag																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986853	36986854	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0042876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	21	278	0	ENST00000354822.5:c.835_836del	p.Gln279GlyfsTer159	p.Q279Gfs*159	ENST00000354822	NM_001079668.2	279	CAg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587780070		P-0042908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	76	530	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120480480	120480480	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0042908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	41	230	0	ENST00000256646.2:c.3337G>C	p.Gly1113Arg	p.G1113R	ENST00000256646	NM_024408.3	1113	Ggt/Cgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29490375	29490375	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	65	323	1	ENST00000358273.4:c.462del	p.Phe154LeufsTer11	p.F154Lfs*11	ENST00000358273	NM_001042492.2	154	Ttt/tt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412702	139412702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	116	680	0	ENST00000277541.6:c.1142G>A	p.Cys381Tyr	p.C381Y	ENST00000277541	NM_017617.3	381	tGt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	213	733	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	244	814	2	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70967582	70967582	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	149	721	1	ENST00000276594.2:c.1441C>T	p.Arg481Ter	p.R481*	ENST00000276594	NM_024504.3	481	Cga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	30143109	30143109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	37	831	0	ENST00000389048.3:c.417G>C	p.Lys139Asn	p.K139N	ENST00000389048	NM_004304.4	139	aaG/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0043000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	89	517	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
ATM	472	MSKCC	GRCh37	11	108106477	108106477	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	42	205	0	ENST00000278616.4:c.412G>T	p.Gly138Ter	p.G138*	ENST00000278616	NM_000051.3	138	Gga/Tga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52696254	52696254	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	68	515	0	ENST00000394830.3:c.423G>A	p.Trp141Ter	p.W141*	ENST00000394830	NM_018313.4	141	tgG/tgA																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248120	110248120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	119	461	1	ENST00000374672.4:c.1352C>T	p.Thr451Met	p.T451M	ENST00000374672	NM_004235.4	451	aCg/aTg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926888	112926888	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs397507546		P-0043067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	247	709	0	ENST00000351677.2:c.1508G>T	p.Gly503Val	p.G503V	ENST00000351677	NM_002834.3	503	gGg/gTg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207089	1207090	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0043067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	460	1044	1	ENST00000326873.7:c.177_178del	p.Tyr60ArgfsTer102	p.Y60Rfs*102	ENST00000326873	NM_000455.4	59	tcTTac/tcac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602874	10602874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	253	1120	0	ENST00000171111.5:c.704A>G	p.Asp235Gly	p.D235G	ENST00000171111	NM_203500.1	235	gAc/gGc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054827	5054828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	96	438	0	ENST00000381652.3:c.881dup	p.Gly295TrpfsTer10	p.G295Wfs*10	ENST00000381652	NM_004972.3	293	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	19	638	0	ENST00000269305.4:c.737T>A	p.Met246Lys	p.M246K	ENST00000269305	NM_001126112.2	246	aTg/aAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133237689	133237689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500820		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	224	630	1	ENST00000320574.5:c.2926C>T	p.Arg976Cys	p.R976C	ENST00000320574	NM_006231.2	976	Cgc/Tgc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246279	46246279	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	42	335	0	ENST00000334344.6:c.4373C>G	p.Ser1458Ter	p.S1458*	ENST00000334344	NM_152641.2	1458	tCa/tGa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233073	69233073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	42	271	0	ENST00000462284.1:c.938C>T	p.Ser313Leu	p.S313L	ENST00000462284	NM_002392.5	313	tCa/tTa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56179506	56179506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	30	223	1	ENST00000399503.3:c.3819G>T	p.Gln1273His	p.Q1273H	ENST00000399503	NM_005921.1	1273	caG/caT																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554352	106554352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	65	371	0	ENST00000369096.4:c.1880G>A	p.Gly627Glu	p.G627E	ENST00000369096	NM_001198.3	627	gGa/gAa																																																																														
SYK	6850	MSKCC	GRCh37	9	93650802	93650802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	308	0	ENST00000375746.1:c.1728G>A	p.Met576Ile	p.M576I	ENST00000375746	NM_001174167.1	576	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587782272		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	185	560	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
MDM4	4194	MSKCC	GRCh37	1	204518706	204518706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	28	269	0	ENST00000367182.3:c.1369C>G	p.Leu457Val	p.L457V	ENST00000367182	NM_001278516.1	457	Ctt/Gtt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41197783	41197783	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs273902776		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	106	599	0	ENST00000357654.3:c.5504G>A	p.Arg1835Gln	p.R1835Q	ENST00000357654	NM_007294.3	1835	cGa/cAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251857	212251857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	49	253	0	ENST00000342788.4:c.3202G>A	p.Asp1068Asn	p.D1068N	ENST00000342788	NM_005235.2	1068	Gat/Aat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528930	157528930	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	76	509	0	ENST00000346085.5:c.6655G>T	p.Glu2219Ter	p.E2219*	ENST00000346085	NM_020732.3	2219	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579373	7579374	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	194	766	1	ENST00000269305.4:c.313_314delinsTT	p.Gly105Phe	p.G105F	ENST00000269305	NM_001126112.2	105	GGc/TTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210843	2210843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	55	385	0	ENST00000398665.3:c.1340C>T	p.Ser447Phe	p.S447F	ENST00000398665	NM_032482.2	447	tCc/tTc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772605	135772605	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	64	468	0	ENST00000298552.3:c.2941G>C	p.Glu981Gln	p.E981Q	ENST00000298552	NM_001162426.1	981	Gaa/Caa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483899	88483899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	93	693	0	ENST00000360948.2:c.1671C>G	p.Cys557Trp	p.C557W	ENST00000360948	NM_001012338.2	557	tgC/tgG																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719424	190719424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	25	288	0	ENST00000441310.2:c.1426G>C	p.Asp476His	p.D476H	ENST00000441310	NM_000534.4	476	Gat/Cat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405688	139405688	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377353441		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	426	829	0	ENST00000277541.6:c.2503C>T	p.Pro835Ser	p.P835S	ENST00000277541	NM_017617.3	835	Ccc/Tcc																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2493180	2493180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	102	702	0	ENST00000355716.4:c.620C>T	p.Ser207Leu	p.S207L	ENST00000355716	NM_003820.2	207	tCa/tTa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11300435	11300435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	181	557	0	ENST00000361445.4:c.1711A>G	p.Thr571Ala	p.T571A	ENST00000361445	NM_004958.3	571	Acg/Gcg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237688	16237688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	75	612	0	ENST00000375759.3:c.1135G>T	p.Gly379Cys	p.G379C	ENST00000375759	NM_015001.2	379	Ggt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242772	16242772	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	51	424	0	ENST00000375759.3:c.1393G>T	p.Val465Leu	p.V465L	ENST00000375759	NM_015001.2	465	Gtg/Ttg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120478170	120478170	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	60	411	0	ENST00000256646.2:c.3580C>G	p.Gln1194Glu	p.Q1194E	ENST00000256646	NM_024408.3	1194	Cag/Gag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120478217	120478217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	46	348	0	ENST00000256646.2:c.3533G>C	p.Gly1178Ala	p.G1178A	ENST00000256646	NM_024408.3	1178	gGc/gCc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731084	162731084	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	398	480	0	ENST00000367921.3:c.939G>A	p.Trp313Ter	p.W313*	ENST00000367921	NM_006182.2	313	tgG/tgA																																																																														
RET	5979	MSKCC	GRCh37	10	43615649	43615649	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	62	390	1	ENST00000355710.3:c.2728C>A	p.Gln910Lys	p.Q910K	ENST00000355710	NM_020975.4	910	Cag/Aag																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851548	63851548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	149	561	0	ENST00000279873.7:c.2326G>A	p.Glu776Lys	p.E776K	ENST00000279873	NM_032199.2	776	Gag/Aag																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248592	8248592	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	222	688	0	ENST00000335790.3:c.295G>T	p.Glu99Ter	p.E99*	ENST00000335790	NM_002315.2	99	Gag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108143494	108143494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	44	415	0	ENST00000278616.4:c.3199G>C	p.Asp1067His	p.D1067H	ENST00000278616	NM_000051.3	1067	Gac/Cac																																																																														
CBL	867	MSKCC	GRCh37	11	119142578	119142578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	36	358	0	ENST00000264033.4:c.577G>T	p.Ala193Ser	p.A193S	ENST00000264033	NM_005188.3	193	Gct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420634	49420634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	200	605	0	ENST00000301067.7:c.15115G>T	p.Gly5039Cys	p.G5039C	ENST00000301067	NM_003482.3	5039	Ggt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425663	49425663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	99	642	1	ENST00000301067.7:c.12825G>T	p.Gln4275His	p.Q4275H	ENST00000301067	NM_003482.3	4275	caG/caT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446082	49446082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1262	148	887	0	ENST00000301067.7:c.1384C>T	p.Pro462Ser	p.P462S	ENST00000301067	NM_003482.3	462	Cct/Tct																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562400	21562400	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	290	531	1	ENST00000382592.4:c.1519G>T	p.Gly507Ter	p.G507*	ENST00000382592	NM_014572.2	507	Gga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906746	32906746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	94	625	0	ENST00000380152.3:c.1131G>T	p.Glu377Asp	p.E377D	ENST00000380152		377	gaG/gaT																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434572	99434572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	77	458	0	ENST00000268035.6:c.659G>T	p.Gly220Val	p.G220V	ENST00000268035	NM_000875.3	220	gGg/gTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99440040	99440040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	77	402	0	ENST00000268035.6:c.1008G>C	p.Lys336Asn	p.K336N	ENST00000268035	NM_000875.3	336	aaG/aaC																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785607	50785607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	130	616	2	ENST00000398568.2:c.597G>T	p.Leu199Phe	p.L199F	ENST00000398568	NM_001042412.1	199	ttG/ttT																																																																														
NF1	4763	MSKCC	GRCh37	17	29556260	29556260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	79	401	0	ENST00000358273.4:c.2627C>G	p.Ser876Cys	p.S876C	ENST00000358273	NM_001042492.2	876	tCt/tGt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37882819	37882819	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	82	549	0	ENST00000269571.5:c.2877G>A	p.Trp959Ter	p.W959*	ENST00000269571		959	tgG/tgA																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519004	66519004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	68	456	0	ENST00000358598.2:c.285G>T	p.Arg95Ser	p.R95S	ENST00000358598	NM_212471.2	95	agG/agT																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732438	74732515	+	inframe_deletion	In_Frame_Del	DEL	AGATCGAGAACGAGTGCGGGACCGAGACTTCGAGCGGCTGTAGCGAGATCGGCTGCGAGACCTGGAACGACTCCGACT	AGATCGAGAACGAGTGCGGGACCGAGACTTCGAGCGGCTGTAGCGAGATCGGCTGCGAGACCTGGAACGACTCCGACT	-			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	28	350	0	ENST00000359995.5:c.394_471del	p.Ser132_Ser157del	p.S132_S157del	ENST00000359995	NM_001195427.1	132	AGTCGGAGTCGTTCCAGGTCTCGCAGCCGATCTCGCTACAGCCGCTCGAAGTCTCGGTCCCGCACTCGTTCTCGATCT/-																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78681800	78681800	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	156	655	0	ENST00000306801.3:c.507+1G>T		p.X169_splice	ENST00000306801	NM_020761.2	169																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78865623	78865623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	62	449	0	ENST00000306801.3:c.2087C>T	p.Ser696Phe	p.S696F	ENST00000306801	NM_020761.2	696	tCt/tTt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5239041	5239041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	261	759	0	ENST00000357368.4:c.1738G>T	p.Val580Leu	p.V580L	ENST00000357368	NM_002850.3	580	Gtg/Ttg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599915	10599915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	244	672	1	ENST00000171111.5:c.1661G>T	p.Arg554Leu	p.R554L	ENST00000171111	NM_203500.1	554	cGa/cTa																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308438	30308438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	133	430	0	ENST00000262643.3:c.452G>T	p.Trp151Leu	p.W151L	ENST00000262643	NM_001238.2	151	tGg/tTg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637379	47637379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	94	651	0	ENST00000233146.2:c.513G>C	p.Arg171Ser	p.R171S	ENST00000233146	NM_000251.2	171	agG/agC																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026125	48026125	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	186	352	0	ENST00000234420.5:c.1003A>T	p.Asn335Tyr	p.N335Y	ENST00000234420	NM_000179.2	335	Aat/Tat																																																																														
XPO1	7514	MSKCC	GRCh37	2	61706035	61706035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	66	504	0	ENST00000401558.2:c.3136G>A	p.Asp1046Asn	p.D1046N	ENST00000401558	NM_003400.3	1046	Gat/Aat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248683	212248683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	78	412	0	ENST00000342788.4:c.3584C>G	p.Pro1195Arg	p.P1195R	ENST00000342788	NM_005235.2	1195	cCa/cGa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812318	212812318	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	82	284	0	ENST00000342788.4:c.258C>A	p.Tyr86Ter	p.Y86*	ENST00000342788	NM_005235.2	86	taC/taA																																																																														
BARD1	580	MSKCC	GRCh37	2	215645645	215645645	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	187	476	1	ENST00000260947.4:c.953A>T	p.Asn318Ile	p.N318I	ENST00000260947	NM_000465.2	318	aAt/aTt																																																																														
INHA	3623	MSKCC	GRCh37	2	220440070	220440070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	94	816	0	ENST00000243786.2:c.923C>A	p.Pro308His	p.P308H	ENST00000243786	NM_002191.3	308	cCt/cAt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371613	225371613	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	60	443	0	ENST00000264414.4:c.991G>T	p.Glu331Ter	p.E331*	ENST00000264414	NM_003590.4	331	Gaa/Taa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561172	9561172	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs774601283		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	57	389	0	ENST00000353224.5:c.610G>T	p.Asp204Tyr	p.D204Y	ENST00000353224	NM_177990.2	204	Gac/Tac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770597	40770597	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	200	416	0	ENST00000373198.4:c.2785G>C	p.Asp929His	p.D929H	ENST00000373198	NM_133170.3	929	Gat/Cat																																																																														
EP300	2033	MSKCC	GRCh37	22	41545123	41545123	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	153	605	0	ENST00000263253.7:c.2323A>C	p.Met775Leu	p.M775L	ENST00000263253	NM_001429.3	775	Atg/Ctg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71102872	71102873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	55	334	0	ENST00000318789.4:c.334dup	p.Met112AsnfsTer37	p.M112Nfs*37	ENST00000318789	NM_032682.5	112	atg/aAtg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72891482	72891482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	89	449	0	ENST00000325599.8:c.280C>G	p.Leu94Val	p.L94V	ENST00000325599	NM_018130.2	94	Ctt/Gtt																																																																														
ATR	545	MSKCC	GRCh37	3	142177876	142177876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	94	397	0	ENST00000350721.4:c.7427G>T	p.Arg2476Leu	p.R2476L	ENST00000350721	NM_001184.3	2476	cGt/cTt																																																																														
ATR	545	MSKCC	GRCh37	3	142269112	142269112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	56	327	0	ENST00000350721.4:c.2838G>A	p.Met946Ile	p.M946I	ENST00000350721	NM_001184.3	946	atG/atA																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170015149	170015149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	72	582	0	ENST00000295797.4:c.1555C>A	p.His519Asn	p.H519N	ENST00000295797	NM_002740.5	519	Cac/Aac																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747970	41747970	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1446644422		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	27	149	0	ENST00000226382.2:c.799G>T	p.Gly267Trp	p.G267W	ENST00000226382	NM_003924.3	267	Ggg/Tgg																																																																														
KDR	3791	MSKCC	GRCh37	4	55987283	55987283	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	59	387	1	ENST00000263923.4:c.142A>T	p.Thr48Ser	p.T48S	ENST00000263923	NM_002253.2	48	Act/Tct																																																																														
KDR	3791	MSKCC	GRCh37	4	55987326	55987326	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs149870540		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	64	366	0	ENST00000263923.4:c.99G>T	p.Arg33Ser	p.R33S	ENST00000263923	NM_002253.2	33	agG/agT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627903	187627903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	93	649	0	ENST00000441802.2:c.3079G>A	p.Glu1027Lys	p.E1027K	ENST00000441802	NM_005245.3	1027	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1293898	1293898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	114	890	0	ENST00000310581.5:c.1103C>G	p.Ser368Cys	p.S368C	ENST00000310581	NM_198253.2	368	tCc/tGc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31431779	31431779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	39	305	0	ENST00000344624.3:c.3049G>C	p.Glu1017Gln	p.E1017Q	ENST00000344624		1017	Gaa/Caa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435808	149435808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	115	604	0	ENST00000286301.3:c.2416G>C	p.Asp806His	p.D806H	ENST00000286301	NM_005211.3	806	Gac/Cac																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441160	149441160	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	83	638	0	ENST00000286301.3:c.1754-2A>C		p.X585_splice	ENST00000286301	NM_005211.3	585																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638624	176638624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	117	660	0	ENST00000439151.2:c.3224G>T	p.Gly1075Val	p.G1075V	ENST00000439151	NM_022455.4	1075	gGa/gTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665268	176665268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	45	298	0	ENST00000439151.2:c.3952C>G	p.Leu1318Val	p.L1318V	ENST00000439151	NM_022455.4	1318	Cta/Gta																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163761	152163761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	70	415	0	ENST00000206249.3:c.482G>T	p.Gly161Val	p.G161V	ENST00000206249	NM_000125.3	161	gGc/gTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739939	41739939	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1488241309		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	36	429	0	ENST00000242208.4:c.34G>T	p.Ala12Ser	p.A12S	ENST00000242208	NM_002192.2	12	Gca/Tca																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513346	106513346	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	88	289	0	ENST00000359195.3:c.2250A>T	p.Lys750Asn	p.K750N	ENST00000359195	NM_002649.2	750	aaA/aaT																																																																														
NBN	4683	MSKCC	GRCh37	8	90976654	90976654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	82	369	0	ENST00000265433.3:c.978G>T	p.Gln326His	p.Q326H	ENST00000265433	NM_002485.4	326	caG/caT																																																																														
ABL1	25	MSKCC	GRCh37	9	133759992	133759992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	99	884	0	ENST00000318560.5:c.2315C>T	p.Ser772Phe	p.S772F	ENST00000318560	NM_005157.4	772	tCt/tTt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123227980	123227980	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs182467825		P-0043131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	85	196	0	ENST00000218089.9:c.3691A>G	p.Met1231Val	p.M1231V	ENST00000218089	NM_001042749.1	1231	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	72	459	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579582	7579583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	118	759	0	ENST00000269305.4:c.104dup	p.Leu35PhefsTer8	p.L35Ffs*8	ENST00000269305	NM_001126112.2	35	ttg/ttTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807919	3807919	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587783481		P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	114	557	0	ENST00000262367.5:c.3500A>G	p.Tyr1167Cys	p.Y1167C	ENST00000262367	NM_004380.2	1167	tAt/tGt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602438	10602438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	193	944	0	ENST00000171111.5:c.1140G>C	p.Arg380Ser	p.R380S	ENST00000171111	NM_203500.1	380	agG/agC																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115267842	115267842	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	116	470	0	ENST00000438362.2:c.1891G>T	p.Val631Leu	p.V631L	ENST00000438362	NM_001242891.1	631	Gtg/Ttg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895650	28895650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	91	601	0	ENST00000282397.4:c.3124G>T	p.Gly1042Cys	p.G1042C	ENST00000282397	NM_002019.4	1042	Ggc/Tgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523023	25523023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	94	885	0	ENST00000264709.3:c.162G>T	p.Lys54Asn	p.K54N	ENST00000264709	NM_175629.2	54	aaG/aaT																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450405	50450405	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	112	416	0	ENST00000331340.3:c.589G>T	p.Val197Phe	p.V197F	ENST00000331340	NM_006060.4	197	Gtt/Ttt																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs113954997		P-0043200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	148	643	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
BTK	695	MSKCC	GRCh37	X	100612503	100612503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	128	501	0	ENST00000308731.7:c.1171G>T	p.Gly391Ter	p.G391*	ENST00000308731	NM_000061.2	391	Gga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858114	9858114	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs773991023		P-0043200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	176	696	0	ENST00000330684.3:c.3287A>T	p.Lys1096Met	p.K1096M	ENST00000330684	NM_001134407.1	1096	aAg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518304	187518304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	88	345	0	ENST00000441802.2:c.12390G>T	p.Glu4130Asp	p.E4130D	ENST00000441802	NM_005245.3	4130	gaG/gaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	617	464	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520253	176520253	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375466821		P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1415	129	737	0	ENST00000292408.4:c.1172G>A	p.Arg391Gln	p.R391Q	ENST00000292408	NM_213647.1	391	cGa/cAa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602337	10602337	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	396	846	0	ENST00000171111.5:c.1241A>T	p.Asn414Ile	p.N414I	ENST00000171111	NM_203500.1	414	aAc/aTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40899067	40899067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	191	662	0	ENST00000373198.4:c.2203C>A	p.Pro735Thr	p.P735T	ENST00000373198	NM_133170.3	735	Ccg/Acg																																																																														
FH	2271	MSKCC	GRCh37	1	241667495	241667495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	116	298	0	ENST00000366560.3:c.955G>T	p.Asp319Tyr	p.D319Y	ENST00000366560	NM_000143.3	319	Gac/Tac																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554335	81554335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	73	379	0	ENST00000298171.2:c.355C>A	p.Pro119Thr	p.P119T	ENST00000298171	NM_000369.2	119	Cct/Act																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576259	88576259	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	222	481	0	ENST00000360948.2:c.1414A>T	p.Ser472Cys	p.S472C	ENST00000360948	NM_001012338.2	472	Agt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857196	9857196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	132	531	0	ENST00000330684.3:c.4205G>T	p.Arg1402Leu	p.R1402L	ENST00000330684	NM_001134407.1	1402	cGg/cTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371673	89371673	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	126	759	0	ENST00000301030.4:c.167G>C	p.Ser56Thr	p.S56T	ENST00000301030	NM_001256183.1	56	aGc/aCc																																																																														
AR	367	MSKCC	GRCh37	X	66765473	66765473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	226	788	0	ENST00000374690.3:c.485C>A	p.Ser162Tyr	p.S162Y	ENST00000374690	NM_000044.3	162	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520002		P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	109	603	0	ENST00000269305.4:c.721T>C	p.Ser241Pro	p.S241P	ENST00000269305	NM_001126112.2	241	Tcc/Ccc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163315582	163315582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	46	304	2	ENST00000271452.3:c.922G>A	p.Glu308Lys	p.E308K	ENST00000271452	NM_145697.2	308	Gaa/Aaa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470580	25470580	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	106	767	0	ENST00000264709.3:c.894del	p.Lys299AsnfsTer17	p.K299Nfs*17	ENST00000264709	NM_175629.2	298	ggG/gg																																																																														
KIT	3815	MSKCC	GRCh37	4	55561780	55561780	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	73	382	0	ENST00000288135.5:c.170T>C	p.Leu57Ser	p.L57S	ENST00000288135	NM_000222.2	57	tTa/tCa																																																																														
CBL	867	MSKCC	GRCh37	11	119156221	119156221	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	94	513	0	ENST00000264033.4:c.1886A>T	p.Glu629Val	p.E629V	ENST00000264033	NM_005188.3	629	gAg/gTg																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626932	14626932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	92	681	0	ENST00000254322.2:c.843A>G	p.Ile281Met	p.I281M	ENST00000254322	NM_006145.1	281	atA/atG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306526	41306526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	177	495	0	ENST00000373198.4:c.1133C>T	p.Thr378Ile	p.T378I	ENST00000373198	NM_133170.3	378	aCc/aTc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755522	57755522	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	45	404	0	ENST00000274289.3:c.265G>C	p.Gly89Arg	p.G89R	ENST00000274289	NM_006622.3	89	Gga/Cga																																																																														
APC	324	MSKCC	GRCh37	5	112175334	112175335	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	71	230	0	ENST00000257430.4:c.4043_4044insA	p.His1349AlafsTer5	p.H1349Afs*5	ENST00000257430	NM_000038.5	1348	agg/agAg																																																																														
SESN3	143686	MSKCC	GRCh37	11	94917759	94917759	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	218	350	0	ENST00000536441.1:c.763-1G>C		p.X255_splice	ENST00000536441	NM_144665.3	255																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43699623	43699623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	238	610	0	ENST00000382044.4:c.5892C>G	p.Phe1964Leu	p.F1964L	ENST00000382044	NM_001141980.1	1964	ttC/ttG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821182	72821182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	250	648	0	ENST00000268489.5:c.10993G>A	p.Asp3665Asn	p.D3665N	ENST00000268489	NM_006885.3	3665	Gac/Aac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	protein_altering_variant	In_Frame_Ins	INS	G	G	TTGT			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	253	717	0	ENST00000269571.5:c.2327delinsTTGT	p.Gly776delinsValVal	p.G776delinsVV	ENST00000269571		776	gGt/gTTGTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220450	1220452	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	244	779	0	ENST00000326873.7:c.543_545del	p.Asn181_Leu182delinsLys	p.N181_L182delinsK	ENST00000326873	NM_000455.4	181	aaCCTg/aag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250915	10250915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	235	702	0	ENST00000340748.4:c.3565G>A	p.Glu1189Lys	p.E1189K	ENST00000340748		1189	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152041	11152041	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	215	556	0	ENST00000344626.4:c.4229C>A	p.Ser1410Ter	p.S1410*	ENST00000344626	NM_003072.3	1410	tCa/tAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26029132	26029132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	179	417	0	ENST00000435504.4:c.218A>C	p.Lys73Thr	p.K73T	ENST00000435504		73	aAg/aCg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52675997	52675997	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	245	619	0	ENST00000394830.3:c.1060G>C	p.Glu354Gln	p.E354Q	ENST00000394830	NM_018313.4	354	Gaa/Caa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52676053	52676053	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	131	329	0	ENST00000394830.3:c.1004G>C	p.Arg335Thr	p.R335T	ENST00000394830	NM_018313.4	335	aGa/aCa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117866654	117866654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	139	540	0	ENST00000297338.2:c.991G>A	p.Glu331Lys	p.E331K	ENST00000297338	NM_006265.2	331	Gag/Aag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080532	5080532	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	83	289	0	ENST00000381652.3:c.2284-1G>A		p.X762_splice	ENST00000381652	NM_004972.3	762																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325449	1325449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	261	698	0	ENST00000381566.1:c.226C>T	p.Leu76Phe	p.L76F	ENST00000381566		76	Ctc/Ttc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222205	53222205	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	233	722	0	ENST00000375401.3:c.4627C>G	p.Leu1543Val	p.L1543V	ENST00000375401	NM_004187.3	1543	Ctg/Gtg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	161	660	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	141	828	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	10	341	0	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs530941076		P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	217	825	2	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat																																																																														
ATRX	546	MSKCC	GRCh37	X	76890138	76890138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	144	335	0	ENST00000373344.5:c.4756C>T	p.Pro1586Ser	p.P1586S	ENST00000373344	NM_000489.3	1586	Cca/Tca																																																																														
GNA11	2767	MSKCC	GRCh37	19	3121074	3121074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	281	837	0	ENST00000078429.4:c.977C>T	p.Ser326Leu	p.S326L	ENST00000078429	NM_002067.2	326	tCa/tTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139894	55139894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	159	465	0	ENST00000257290.5:c.1555C>T	p.Pro519Ser	p.P519S	ENST00000257290	NM_006206.4	519	Ccc/Tcc																																																																														
RET	5979	MSKCC	GRCh37	10	43609973	43609975	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	317	906	0	ENST00000355710.3:c.1927_1929del	p.Leu643del	p.L643del	ENST00000355710	NM_020975.4	642	gTCCtc/gtc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421654	49421654	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	234	777	1	ENST00000301067.7:c.14575C>T	p.Gln4859Ter	p.Q4859*	ENST00000301067	NM_003482.3	4859	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428074	49428074	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	244	762	0	ENST00000301067.7:c.10516del	p.Asp3506ThrfsTer20	p.D3506Tfs*20	ENST00000301067	NM_003482.3	3506	Gac/ac																																																																														
MGA	23269	MSKCC	GRCh37	15	41961786	41961786	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	142	573	0	ENST00000219905.7:c.694G>C	p.Glu232Gln	p.E232Q	ENST00000219905	NM_001164273.1	232	Gaa/Caa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3824575	3824576	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACTGAGC			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	59	503	0	ENST00000262367.5:c.2270_2277dup	p.Pro760AlafsTer19	p.P760Afs*19	ENST00000262367	NM_004380.2	759	-/GCTCAGTG																																																																														
INSR	3643	MSKCC	GRCh37	19	7141690	7141690	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	40	686	0	ENST00000302850.5:c.2680G>T	p.Glu894Ter	p.E894*	ENST00000302850	NM_000208.2	894	Gag/Tag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178097182	178097182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	41	572	0	ENST00000397062.3:c.532G>C	p.Asp178His	p.D178H	ENST00000397062	NM_006164.4	178	Gac/Cac																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652121	36652134	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCGGCGAGGCC	GCCCCGGCGAGGCC	-			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	81	802	0	ENST00000244741.5:c.244_257del	p.Pro82GlyfsTer2	p.P82Gfs*2	ENST00000244741	NM_000389.4	81	ggGCCCCGGCGAGGCCgg/gggg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845677	151845678	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CTAG			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	435	741	0	ENST00000262189.6:c.13334_13335insCTAG	p.Ala4446Ter	p.A4446*	ENST00000262189	NM_170606.2	4445	ggt/ggCTAGt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341894	8341894	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	87	636	0	ENST00000356435.5:c.4746T>A	p.Tyr1582Ter	p.Y1582*	ENST00000356435		1582	taT/taA																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98242327	98242327	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	195	653	0	ENST00000331920.6:c.991T>C	p.Ser331Pro	p.S331P	ENST00000331920	NM_000264.3	331	Tcc/Ccc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929371	44929371	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	117	406	0	ENST00000377967.4:c.2471C>G	p.Ser824Ter	p.S824*	ENST00000377967	NM_021140.2	824	tCa/tGa																																																																														
ATRX	546	MSKCC	GRCh37	X	76890131	76890131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	150	343	1	ENST00000373344.5:c.4763C>T	p.Ser1588Leu	p.S1588L	ENST00000373344	NM_000489.3	1588	tCa/tTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195080	123195081	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	59	208	0	ENST00000218089.9:c.1424_1425del	p.Glu475AlafsTer8	p.E475Afs*8	ENST00000218089	NM_001042749.1	475	GAg/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295190	1295196	+	upstream_gene_variant	5'Flank	DEL	GCCGCGG	GCCGCGG	ACGGGA			P-0043283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	106	356	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	274	471	0				ENST00000310581	NM_198253.2																																																																																
BLM	641	MSKCC	GRCh37	15	91292745	91292745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	210	687	0	ENST00000355112.3:c.247C>T	p.Gln83Ter	p.Q83*	ENST00000355112	NM_000057.2	83	Cag/Tag																																																																														
EED	8726	MSKCC	GRCh37	11	85956278	85956278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	95	301	0	ENST00000263360.6:c.7G>A	p.Glu3Lys	p.E3K	ENST00000263360	NM_003797.3	3	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	674	771	0	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180417	94180417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	219	619	0	ENST00000323929.3:c.1751C>T	p.Ser584Leu	p.S584L	ENST00000323929	NM_005591.3	584	tCa/tTa																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778251	27778251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761484168		P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	278	481	1	ENST00000369163.2:c.400G>A	p.Glu134Lys	p.E134K	ENST00000369163	NM_003536.2	134	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856356	45856356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	358	830	0	ENST00000391945.4:c.1816G>C	p.Glu606Gln	p.E606Q	ENST00000391945	NM_000400.3	606	Gag/Cag																																																																														
FANCC	2176	MSKCC	GRCh37	9	97887418	97887418	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs776529713		P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	209	666	1	ENST00000289081.3:c.946C>T	p.Gln316Ter	p.Q316*	ENST00000289081	NM_000136.2	316	Cag/Tag																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792752	33792752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	29	96	0	ENST00000498907.2:c.569C>T	p.Ser190Leu	p.S190L	ENST00000498907	NM_004364.3	190	tCg/tTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAGCAA	-	rs1238972450		P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	24	254	0	ENST00000346085.5:c.369_392del	p.Gln124_Gln131del	p.Q124_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAA/-																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307593	118307593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	191	675	0	ENST00000534358.1:c.366C>G	p.Ile122Met	p.I122M	ENST00000534358	NM_005933.3	122	atC/atG																																																																														
MITF	4286	MSKCC	GRCh37	3	69788803	69788803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	108	447	0	ENST00000352241.4:c.55G>A	p.Glu19Lys	p.E19K	ENST00000352241	NM_198159.2	19	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735548	40735548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1301	215	512	0	ENST00000373198.4:c.3325C>T	p.Arg1109Trp	p.R1109W	ENST00000373198	NM_133170.3	1109	Cgg/Tgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944498	71944498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	370	677	0	ENST00000298229.2:c.2054T>C	p.Val685Ala	p.V685A	ENST00000298229	NM_001567.3	685	gTg/gCg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11313949	11313949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	648	750	0	ENST00000361445.4:c.787G>C	p.Gly263Arg	p.G263R	ENST00000361445	NM_004958.3	263	Gga/Cga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65344790	65344790	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	85	452	0	ENST00000342505.4:c.247G>C	p.Glu83Gln	p.E83Q	ENST00000342505	NM_002227.2	83	Gag/Cag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78414900	78414900	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	306	479	0	ENST00000370768.2:c.1866A>C	p.Gln622His	p.Q622H	ENST00000370768	NM_003902.3	622	caA/caC																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683422	88683422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	64	250	0	ENST00000372037.3:c.1545G>C	p.Leu515Phe	p.L515F	ENST00000372037	NM_004329.2	515	ttG/ttC																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943315	71943315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	380	792	1	ENST00000298229.2:c.1647G>A	p.Met549Ile	p.M549I	ENST00000298229	NM_001567.3	549	atG/atA																																																																														
KDM5A	5927	MSKCC	GRCh37	12	493235	493235	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	225	514	0	ENST00000399788.2:c.328G>C	p.Val110Leu	p.V110L	ENST00000399788	NM_001042603.1	110	Gta/Cta																																																																														
RECQL	5965	MSKCC	GRCh37	12	21624576	21624576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	253	466	0	ENST00000421138.2:c.1453G>A	p.Glu485Lys	p.E485K	ENST00000421138		485	Gaa/Aaa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488253	56488253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	347	672	0	ENST00000267101.3:c.1772A>C	p.His591Pro	p.H591P	ENST00000267101	NM_001982.3	591	cAt/cCt																																																																														
MDM2	4193	MSKCC	GRCh37	12	69202996	69202996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	325	496	0	ENST00000462284.1:c.23G>A	p.Cys8Tyr	p.C8Y	ENST00000462284	NM_002392.5	8	tGc/tAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48947524	48947553	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTTTATCCCCTCTAGGACTGTTATGAAC	ATTTTTATCCCCTCTAGGACTGTTATGAAC	-			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	64	369	0	ENST00000267163.4:c.1128-16_1141del		p.X376_splice	ENST00000267163	NM_000321.2	376																																																																															
IRS2	8660	MSKCC	GRCh37	13	110437108	110437109	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGGA			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	110	148	1	ENST00000375856.3:c.1288_1292dup	p.Met431IlefsTer115	p.M431Ifs*115	ENST00000375856	NM_003749.2	431	atg/atTCCATg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569907	95569907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	213	413	0	ENST00000343455.3:c.3826G>A	p.Asp1276Asn	p.D1276N	ENST00000343455	NM_177438.2	1276	Gat/Aat																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029026	14029026	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	152	262	0	ENST00000311895.7:c.1237G>C	p.Asp413His	p.D413H	ENST00000311895	NM_005236.2	413	Gat/Cat																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618767	37618767	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	357	649	0	ENST00000447079.4:c.443C>G	p.Ser148Trp	p.S148W	ENST00000447079	NM_015083.1	148	tCg/tGg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554066	63554066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	501	676	1	ENST00000307078.5:c.673C>G	p.Leu225Val	p.L225V	ENST00000307078	NM_004655.3	225	Ctc/Gtc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792336	33792336	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	376	822	0	ENST00000498907.2:c.985G>T	p.Glu329Ter	p.E329*	ENST00000498907	NM_004364.3	329	Gaa/Taa																																																																														
RRAS	6237	MSKCC	GRCh37	19	50138910	50138910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	406	977	0	ENST00000246792.3:c.580C>G	p.Gln194Glu	p.Q194E	ENST00000246792	NM_006270.3	194	Cag/Gag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57470677	57470677	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	68	323	0	ENST00000371085.3:c.150A>C	p.Glu50Asp	p.E50D	ENST00000371085	NM_000516.4	50	gaA/gaC																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29099544	29099544	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	237	406	0	ENST00000328354.6:c.857T>C	p.Ile286Thr	p.I286T	ENST00000328354	NM_007194.3	286	aTc/aCc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119545660	119545660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	130	449	0	ENST00000316626.5:c.1277C>G	p.Ser426Cys	p.S426C	ENST00000316626		426	tCt/tGt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963997	2963997	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	111	588	0	ENST00000396946.4:c.1810G>A	p.Asp604Asn	p.D604N	ENST00000396946	NM_032415.4	604	Gac/Aac																																																																														
AGO2	27161	MSKCC	GRCh37	8	141551355	141551355	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1386824799		P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	187	891	1	ENST00000220592.5:c.1942G>A	p.Glu648Lys	p.E648K	ENST00000220592	NM_012154.3	648	Gag/Aag																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915940	127915940	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	139	569	0	ENST00000373547.4:c.541C>G	p.Arg181Gly	p.R181G	ENST00000373547	NM_002721.4	181	Cgg/Ggg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759700	133759700	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	129	679	0	ENST00000318560.5:c.2023G>C	p.Glu675Gln	p.E675Q	ENST00000318560	NM_005157.4	675	Gag/Cag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781278	135781278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	331	626	0	ENST00000298552.3:c.1687G>A	p.Asp563Asn	p.D563N	ENST00000298552	NM_001162426.1	563	Gat/Aat																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043314-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	41	522	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																														
CCNE1	898	MSKCC	GRCh37	19	30303676	30303676	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043314-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			945	54	529	0	ENST00000262643.3:c.104T>C	p.Val35Ala	p.V35A	ENST00000262643	NM_001238.2	35	gTg/gCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538993	187538993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043314-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			784	44	489	0	ENST00000441802.2:c.8747C>T	p.Pro2916Leu	p.P2916L	ENST00000441802	NM_005245.3	2916	cCa/cTa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593584	55593598	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACCCATGTATGAAGT	ACCCATGTATGAAGT	-			P-0043343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	153	413	0	ENST00000288135.5:c.1652_1666del	p.Pro551_Val555del	p.P551_V555del	ENST00000288135	NM_000222.2	550	aaACCCATGTATGAAGTa/aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	318	576	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912655		P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	164	584	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																														
JUN	3725	MSKCC	GRCh37	1	59247920	59247920	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	146	724	0	ENST00000371222.2:c.823G>T	p.Glu275Ter	p.E275*	ENST00000371222	NM_002228.3	275	Gag/Tag																																																																														
FH	2271	MSKCC	GRCh37	1	241661202	241661202	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1391195810		P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	51	562	0	ENST00000366560.3:c.1459A>G	p.Ile487Val	p.I487V	ENST00000366560	NM_000143.3	487	Atc/Gtc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112565	115112565	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1214834962		P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	95	652	0	ENST00000257566.3:c.1175C>T	p.Ala392Val	p.A392V	ENST00000257566	NM_016569.3	392	gCg/gTg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42842662	42842663	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	44	558	2	ENST00000398585.3:c.1194_1195delinsTG	p.Lys399Glu	p.K399E	ENST00000398585	NM_001135099.1	398	gtGAaa/gtTGaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584469	52584469	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	95	502	0	ENST00000394830.3:c.4544del	p.Asn1515ThrfsTer32	p.N1515Tfs*32	ENST00000394830	NM_018313.4	1515	aAc/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	147	302	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	431	508	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085729	16085729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	192	489	0	ENST00000281043.3:c.905G>T	p.Arg302Leu	p.R302L	ENST00000281043	NM_005378.4	302	cGt/cTt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725019	162725019	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	336	352	0	ENST00000367921.3:c.491T>C	p.Val164Ala	p.V164A	ENST00000367921	NM_006182.2	164	gTc/gCc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427974	49427974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	195	550	0	ENST00000301067.7:c.10616G>T	p.Arg3539Leu	p.R3539L	ENST00000301067	NM_003482.3	3539	cGg/cTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120864	115120864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	172	448	0	ENST00000257566.3:c.142C>A	p.Pro48Thr	p.P48T	ENST00000257566	NM_016569.3	48	Ccc/Acc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690606	88690606	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	153	339	0	ENST00000360948.2:c.424C>G	p.Leu142Val	p.L142V	ENST00000360948	NM_001012338.2	142	Ctc/Gtc																																																																														
STK11	6794	MSKCC	GRCh37	19	1218444	1218444	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	270	497	0	ENST00000326873.7:c.319del	p.His107ThrfsTer22	p.H107Tfs*22	ENST00000326873	NM_000455.4	107	Cac/ac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602629	10602635	+	frameshift_variant	Frame_Shift_Del	DEL	TCACCTG	TCACCTG	-			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	399	548	0	ENST00000171111.5:c.943_949del	p.Gln315CysfsTer11	p.Q315Cfs*11	ENST00000171111	NM_203500.1	315	CAGGTGAtg/tg																																																																														
ALK	238	MSKCC	GRCh37	2	29917752	29917752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	242	553	0	ENST00000389048.3:c.916G>T	p.Gly306Trp	p.G306W	ENST00000389048	NM_004304.4	306	Ggg/Tgg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31393146	31393146	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	111	269	0	ENST00000328111.2:c.2234C>T	p.Pro745Leu	p.P745L	ENST00000328111	NM_006892.3	745	cCc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112170726	112170726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	169	390	1	ENST00000257430.4:c.1822G>A	p.Ala608Thr	p.A608T	ENST00000257430	NM_000038.5	608	Gct/Act																																																																														
APC	324	MSKCC	GRCh37	5	112170808	112170808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	182	425	0	ENST00000257430.4:c.1904G>A	p.Gly635Glu	p.G635E	ENST00000257430	NM_000038.5	635	gGa/gAa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149513541	149513541	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	199	498	1	ENST00000261799.4:c.662T>A	p.Val221Glu	p.V221E	ENST00000261799	NM_002609.3	221	gTg/gAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32165215	32165215	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	467	595	0	ENST00000375023.3:c.4913T>A	p.Leu1638Gln	p.L1638Q	ENST00000375023	NM_004557.3	1638	cTg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0043375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	133	536	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	150	757	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
MGA	23269	MSKCC	GRCh37	15	42000406	42000406	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	36	202	0	ENST00000219905.7:c.2425G>A	p.Gly809Ser	p.G809S	ENST00000219905	NM_001164273.1	809	Ggt/Agt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911614	114911614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	232	445	0	ENST00000543371.1:c.1132G>A	p.Ala378Thr	p.A378T	ENST00000543371	NM_001198531.1	378	Gcg/Acg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99136537	99136537	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746072331		P-0043379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	251	583	1	ENST00000074304.5:c.26G>A	p.Arg9His	p.R9H	ENST00000074304	NM_001134224.1	9	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs1427441061		P-0043379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	1311	519	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
ATM	472	MSKCC	GRCh37	11	108165681	108165681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	84	242	1	ENST00000278616.4:c.4804G>T	p.Val1602Phe	p.V1602F	ENST00000278616	NM_000051.3	1602	Gtt/Ttt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107086	27107094	+	inframe_deletion	In_Frame_Del	DEL	CGGGCTGCC	CGGGCTGCC	-			P-0043379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	211	395	0	ENST00000324856.7:c.6699_6707del	p.Ala2235_Ala2237del	p.A2235_A2237del	ENST00000324856	NM_006015.4	2233	CGGGCTGCC/-																																																																														
TSC2	7249	MSKCC	GRCh37	16	2106215	2106218	+	frameshift_variant	Frame_Shift_Del	DEL	CGTC	CGTC	-			P-0043379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	317	670	0	ENST00000219476.3:c.620_623del	p.Val207GlyfsTer8	p.V207Gfs*8	ENST00000219476	NM_000548.3	206	tgCGTC/tg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777990	3777990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	35	858	0	ENST00000262367.5:c.7058G>C	p.Arg2353Pro	p.R2353P	ENST00000262367	NM_004380.2	2353	cGg/cCg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248626	10248626	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	200	560	0	ENST00000340748.4:c.4127A>T	p.Glu1376Val	p.E1376V	ENST00000340748		1376	gAg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	60	375	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	94	579	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			992	251	753	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																														
HGF	3082	MSKCC	GRCh37	7	81334734	81334734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	27	463	0	ENST00000222390.5:c.1982C>A	p.Ala661Asp	p.A661D	ENST00000222390	NM_000601.4	661	gCt/gAt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610112	10610113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			935	155	591	0	ENST00000171111.5:c.597dup	p.His200AlafsTer150	p.H200Afs*150	ENST00000171111	NM_203500.1	199	-/G																																																																														
APC	324	MSKCC	GRCh37	5	112175657	112175660	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	78	340	0	ENST00000257430.4:c.4366_4369del	p.Lys1456HisfsTer16	p.K1456Hfs*16	ENST00000257430	NM_000038.5	1456	AAAGca/ca																																																																														
FLT1	2321	MSKCC	GRCh37	13	28908204	28908204	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	87	450	0	ENST00000282397.4:c.2551A>T	p.Lys851Ter	p.K851*	ENST00000282397	NM_002019.4	851	Aaa/Taa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610669	81610669	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	48	377	0	ENST00000298171.2:c.2267C>A	p.Ser756Ter	p.S756*	ENST00000298171	NM_000369.2	756	tCa/tAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	80	369	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039371	47039371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	63	622	0	ENST00000329236.7:c.763C>T	p.Arg255Cys	p.R255C	ENST00000329236	NM_001204466.1	255	Cgc/Tgc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220371	1220372	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	119	409	0	ENST00000326873.7:c.465-1_465delinsTT		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			290	160	501	1	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
FANCA	2175	MSKCC	GRCh37	16	89805306	89805306	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs201658945		P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	141	491	0	ENST00000389301.3:c.4244T>G	p.Phe1415Cys	p.F1415C	ENST00000389301	NM_000135.2	1415	tTc/tGc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652396	48652396	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs202091014		P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	95	696	0	ENST00000376670.3:c.1067G>T	p.Gly356Val	p.G356V	ENST00000376670	NM_002049.3	356	gGc/gTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70357208	70357208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			492	138	504	0	ENST00000374080.3:c.5723G>T	p.Gly1908Val	p.G1908V	ENST00000374080		1908	gGa/gTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220447	123220447	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	86	415	0	ENST00000218089.9:c.3104A>C	p.Glu1035Ala	p.E1035A	ENST00000218089	NM_001042749.1	1035	gAg/gCg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	176	321	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	251	555	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	257	406	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144180	11144180	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			699	233	687	0	ENST00000344626.4:c.3761A>C	p.Glu1254Ala	p.E1254A	ENST00000344626	NM_003072.3	1254	gAg/gCg																																																																														
RB1	5925	MSKCC	GRCh37	13	49033955	49033955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	112	312	0	ENST00000267163.4:c.2092A>G	p.Arg698Gly	p.R698G	ENST00000267163	NM_000321.2	698	Agg/Ggg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174417	11174417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	348	690	0	ENST00000361445.4:c.7258G>C	p.Ala2420Pro	p.A2420P	ENST00000361445	NM_004958.3	2420	Gcc/Ccc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30396471	30396471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			668	166	456	1	ENST00000331968.5:c.248C>A	p.Ser83Tyr	p.S83Y	ENST00000331968	NM_002742.2	83	tCc/tAc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873209	136873209	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1333957805		P-0043503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	36	331	0	ENST00000241393.3:c.289G>A	p.Asp97Asn	p.D97N	ENST00000241393	NM_003467.2	97	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	39	374	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs878853247		P-0043646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	125	838	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957880	1957880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	105	519	0	ENST00000382895.3:c.2846A>G	p.Gln949Arg	p.Q949R	ENST00000382895	NM_133330.2	949	cAg/cGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039651	47039651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	82	797	0	ENST00000329236.7:c.869C>T	p.Pro290Leu	p.P290L	ENST00000329236	NM_001204466.1	290	cCa/cTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779811318		P-0043699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	99	347	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711910	89711910	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0043699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	65	372	0	ENST00000371953.3:c.528T>G	p.Tyr176Ter	p.Y176*	ENST00000371953	NM_000314.4	176	taT/taG																																																																														
KIT	3815	MSKCC	GRCh37	4	55593605	55593610	+	inframe_deletion	In_Frame_Del	DEL	GAAGGT	GAAGGT	-			P-0043796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	176	403	0	ENST00000288135.5:c.1671_1676del	p.Trp557_Val559delinsCys	p.W557_V559delinsC	ENST00000288135	NM_000222.2	557	tgGAAGGTt/tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043815-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	56	363	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SRC	6714	MSKCC	GRCh37	20	36014556	36014556	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747298865		P-0043815-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	82	436	0	ENST00000358208.4:c.329G>A	p.Arg110Gln	p.R110Q	ENST00000358208		110	cGg/cAg																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281374	49281374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043815-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			805	106	548	0	ENST00000282018.3:c.421G>C	p.Val141Leu	p.V141L	ENST00000282018	NM_020377.2	141	Gtt/Ctt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303038	15303038	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765570204		P-0043815-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			680	91	588	2	ENST00000263388.2:c.412C>T	p.Pro138Ser	p.P138S	ENST00000263388	NM_000435.2	138	Ccc/Tcc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703527	47703527	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs1057520735		P-0043815-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	46	367	0	ENST00000233146.2:c.2027C>G	p.Ser676Ter	p.S676*	ENST00000233146	NM_000251.2	676	tCa/tGa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0043830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	53	288	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	91	388	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845344	42845372	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGGGCCAGGCCCCCGGGAGCGCGCTCT	CCAGGGCCAGGCCCCCGGGAGCGCGCTCT	-			P-0043830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	73	579	0	ENST00000398585.3:c.890_918del	p.Glu297AlafsTer34	p.E297Afs*34	ENST00000398585	NM_001135099.1	297	gAGAGCGCGCTCCCGGGGGCCTGGCCCTGG/g																																																																														
FLT4	2324	MSKCC	GRCh37	5	180041149	180041149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	64	659	0	ENST00000261937.6:c.3250G>A	p.Glu1084Lys	p.E1084K	ENST00000261937	NM_182925.4	1084	Gaa/Aaa																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771502	112771502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	51	477	1	ENST00000369452.4:c.1675C>T	p.Gln559Ter	p.Q559*	ENST00000369452	NM_007373.3	559	Cag/Tag																																																																														
EED	8726	MSKCC	GRCh37	11	85966264	85966264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	33	209	0	ENST00000263360.6:c.361G>T	p.Val121Phe	p.V121F	ENST00000263360	NM_003797.3	121	Gtt/Ttt																																																																														
RAD52	5893	MSKCC	GRCh37	12	1039254	1039254	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	87	514	0	ENST00000358495.3:c.243C>G	p.Tyr81Ter	p.Y81*	ENST00000358495	NM_134424.2	81	taC/taG																																																																														
RAD52	5893	MSKCC	GRCh37	12	1039292	1039292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	88	480	0	ENST00000358495.3:c.205C>T	p.His69Tyr	p.H69Y	ENST00000358495	NM_134424.2	69	Cat/Tat																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732489	74732489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	19	254	0	ENST00000359995.5:c.420C>G	p.Ser140Arg	p.S140R	ENST00000359995	NM_001195427.1	140	agC/agG																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78727894	78727894	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778029024		P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	54	543	0	ENST00000306801.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000306801	NM_020761.2	247	Gag/Aag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623230	52623230	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	77	293	0	ENST00000394830.3:c.2821T>G	p.Ser941Ala	p.S941A	ENST00000394830	NM_018313.4	941	Tca/Gca																																																																														
PARK2	0	MSKCC	GRCh37	6	162683688	162683688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	59	449	0	ENST00000366898.1:c.281G>A	p.Gly94Asp	p.G94D	ENST00000366898	NM_004562.2	94	gGc/gAc																																																																														
LYN	4067	MSKCC	GRCh37	8	56866474	56866474	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	69	602	0	ENST00000519728.1:c.721G>T	p.Glu241Ter	p.E241*	ENST00000519728	NM_002350.3	241	Gag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045567	47045567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	55	523	0	ENST00000329236.7:c.2300C>T	p.Ser767Phe	p.S767F	ENST00000329236	NM_001204466.1	767	tCt/tTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70356385	70356385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	52	541	1	ENST00000374080.3:c.5280G>C	p.Glu1760Asp	p.E1760D	ENST00000374080		1760	gaG/gaC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	206	597	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0043869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			35	434	338	1	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108236059	108236059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	135	454	0	ENST00000278616.4:c.8995G>C	p.Asp2999His	p.D2999H	ENST00000278616	NM_000051.3	2999	Gac/Cac																																																																														
ATM	472	MSKCC	GRCh37	11	108236120	108236120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	269	534	0	ENST00000278616.4:c.9056G>A	p.Gly3019Glu	p.G3019E	ENST00000278616	NM_000051.3	3019	gGa/gAa																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250614	26250614	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			23	162	581	0	ENST00000446824.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000446824	NM_021018.2	74	Gag/Cag																																																																														
RB1	5925	MSKCC	GRCh37	13	49033844	49033844	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137853294		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	48	333	0	ENST00000267163.4:c.1981C>T	p.Arg661Trp	p.R661W	ENST00000267163	NM_000321.2	661	Cgg/Tgg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028264	48028264	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200492211		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	56	357	0	ENST00000234420.5:c.3142C>T	p.Gln1048Ter	p.Q1048*	ENST00000234420	NM_000179.2	1048	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259374	89259374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141287594		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	33	366	0	ENST00000336596.2:c.518C>T	p.Pro173Leu	p.P173L	ENST00000336596	NM_005233.5	173	cCt/cTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857284	9857284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	94	475	0	ENST00000330684.3:c.4117G>A	p.Asp1373Asn	p.D1373N	ENST00000330684	NM_001134407.1	1373	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892205	9892205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	91	513	0	ENST00000330684.3:c.2285G>A	p.Gly762Glu	p.G762E	ENST00000330684	NM_001134407.1	762	gGa/gAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230613	46230613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	61	374	0	ENST00000334344.6:c.862C>T	p.Gln288Ter	p.Q288*	ENST00000334344	NM_152641.2	288	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519980		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	91	538	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562773	95562773	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753527258		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	39	289	0	ENST00000343455.3:c.4484C>T	p.Ser1495Leu	p.S1495L	ENST00000343455	NM_177438.2	1495	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	89	203	0				ENST00000310581	NM_198253.2																																																																																
IDH1	3417	MSKCC	GRCh37	2	209116179	209116179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs555882127		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	44	325	1	ENST00000345146.2:c.97C>T	p.Pro33Ser	p.P33S	ENST00000345146	NM_005896.2	33	Ccc/Tcc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2957001	2957001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	75	442	0	ENST00000396946.4:c.2626G>A	p.Glu876Lys	p.E876K	ENST00000396946	NM_032415.4	876	Gaa/Aaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670452	88670452	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143617169		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	39	270	0	ENST00000360948.2:c.1234G>A	p.Glu412Lys	p.E412K	ENST00000360948	NM_001012338.2	412	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106158395	106158395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372118135		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	23	220	0	ENST00000380013.4:c.3296C>T	p.Ser1099Phe	p.S1099F	ENST00000380013	NM_001127208.2	1099	tCt/tTt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956965	2956965	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142828146		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	80	558	0	ENST00000396946.4:c.2662C>T	p.Arg888Cys	p.R888C	ENST00000396946	NM_032415.4	888	Cgt/Tgt																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872041	35872041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	38	466	0	ENST00000216797.5:c.572C>T	p.Ser191Phe	p.S191F	ENST00000216797	NM_020529.2	191	tCt/tTt																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650445	48650445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	85	638	0	ENST00000376670.3:c.415G>A	p.Glu139Lys	p.E139K	ENST00000376670	NM_002049.3	139	Gag/Aag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739837	41739837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	65	379	0	ENST00000242208.4:c.136G>A	p.Asp46Asn	p.D46N	ENST00000242208	NM_002192.2	46	Gat/Aat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257053	198257053	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267599149		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	30	298	0	ENST00000335508.6:c.3889C>T	p.Arg1297Cys	p.R1297C	ENST00000335508	NM_012433.2	1297	Cgt/Tgt																																																																														
BTK	695	MSKCC	GRCh37	X	100609658	100609658	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782740486		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	51	394	0	ENST00000308731.7:c.1591G>A	p.Asp531Asn	p.D531N	ENST00000308731	NM_000061.2	531	Gat/Aat																																																																														
KIT	3815	MSKCC	GRCh37	4	55599339	55599339	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs993022333		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	56	384	0	ENST00000288135.5:c.2465A>C	p.Asn822Thr	p.N822T	ENST00000288135	NM_000222.2	822	aAt/aCt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492909	8492909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	95	496	0	ENST00000356435.5:c.2420G>A	p.Gly807Glu	p.G807E	ENST00000356435		807	gGa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295204	1295204	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs2735943		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	36	171	1				ENST00000310581	NM_198253.2																																																																																
MAPKAP1	79109	MSKCC	GRCh37	9	128201179	128201179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	78	488	2	ENST00000265960.3:c.1556C>T	p.Ser519Phe	p.S519F	ENST00000265960	NM_001006617.1	519	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419977	41419977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	66	493	0	ENST00000373198.4:c.344C>T	p.Ser115Phe	p.S115F	ENST00000373198	NM_133170.3	115	tCc/tTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81934321	81934321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	123	536	1	ENST00000359376.3:c.1298C>T	p.Pro433Leu	p.P433L	ENST00000359376	NM_002661.3	433	cCc/cTc																																																																														
ALK	238	MSKCC	GRCh37	2	29474101	29474101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373846404		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	57	499	0	ENST00000389048.3:c.2074G>A	p.Gly692Arg	p.G692R	ENST00000389048	NM_004304.4	692	Ggg/Agg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778894	3778894	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1421133831		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	41	466	1	ENST00000262367.5:c.6154C>T	p.Arg2052Trp	p.R2052W	ENST00000262367	NM_004380.2	2052	Cgg/Tgg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729536	41729536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	76	485	0	ENST00000242208.4:c.993G>T	p.Lys331Asn	p.K331N	ENST00000242208	NM_002192.2	331	aaG/aaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117679033	117679033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	38	367	0	ENST00000368508.3:c.3788C>T	p.Pro1263Leu	p.P1263L	ENST00000368508	NM_002944.2	1263	cCc/cTc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71008537	71008537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	19	251	0	ENST00000318789.4:c.1895C>T	p.Pro632Leu	p.P632L	ENST00000318789	NM_032682.5	632	cCt/cTt																																																																														
LMO1	4004	MSKCC	GRCh37	11	8252036	8252036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	41	488	0	ENST00000335790.3:c.41C>T	p.Ser14Phe	p.S14F	ENST00000335790	NM_002315.2	14	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674236	117674236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	94	498	1	ENST00000368508.3:c.4238G>A	p.Gly1413Glu	p.G1413E	ENST00000368508	NM_002944.2	1413	gGa/gAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069575	69069575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	29	310	0	ENST00000288368.4:c.4250G>A	p.Gly1417Glu	p.G1417E	ENST00000288368	NM_024870.2	1417	gGa/gAa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239501	123239501	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	79	629	0	ENST00000358487.5:c.2336A>T	p.Tyr779Phe	p.Y779F	ENST00000358487	NM_000141.4	779	tAt/tTt																																																																														
PAX5	5079	MSKCC	GRCh37	9	36846881	36846881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs865878221		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	68	459	1	ENST00000358127.4:c.1058C>T	p.Ser353Leu	p.S353L	ENST00000358127	NM_001280556.1	353	tCg/tTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11294208	11294208	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	177	507	0	ENST00000361445.4:c.2323A>C	p.Ile775Leu	p.I775L	ENST00000361445	NM_004958.3	775	Att/Ctt																																																																														
MPL	4352	MSKCC	GRCh37	1	43805016	43805016	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1464244274		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	146	499	0	ENST00000372470.3:c.466G>A	p.Glu156Lys	p.E156K	ENST00000372470	NM_005373.2	156	Gag/Aag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834145	156834145	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	128	539	0	ENST00000524377.1:c.213-1G>A		p.X71_splice	ENST00000524377	NM_002529.3	71																																																																															
FH	2271	MSKCC	GRCh37	1	241663743	241663743	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201625211		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	102	484	1	ENST00000366560.3:c.1384C>T	p.His462Tyr	p.H462Y	ENST00000366560	NM_000143.3	462	Cat/Tat																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100301	8100301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	84	632	1	ENST00000346208.3:c.275G>A	p.Gly92Glu	p.G92E	ENST00000346208		92	gGa/gAa																																																																														
HRAS	3265	MSKCC	GRCh37	11	533512	533512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs376688893		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	102	611	0	ENST00000311189.7:c.391C>T	p.Gln131Ter	p.Q131*	ENST00000311189		131	Cag/Tag																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625131	69625131	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	73	642	0	ENST00000334134.2:c.662A>C	p.Glu221Ala	p.E221A	ENST00000334134	NM_005247.2	221	gAg/gCg																																																																														
ATM	472	MSKCC	GRCh37	11	108124716	108124716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765965513		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	61	328	0	ENST00000278616.4:c.2074C>T	p.Arg692Cys	p.R692C	ENST00000278616	NM_000051.3	692	Cgc/Tgc																																																																														
CBL	867	MSKCC	GRCh37	11	119103365	119103365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	42	395	0	ENST00000264033.4:c.403G>A	p.Glu135Lys	p.E135K	ENST00000264033	NM_005188.3	135	Gag/Aag																																																																														
CBL	867	MSKCC	GRCh37	11	119149278	119149278	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	78	491	0	ENST00000264033.4:c.1286T>G	p.Ile429Ser	p.I429S	ENST00000264033	NM_005188.3	429	aTc/aGc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46205275	46205275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	53	369	0	ENST00000334344.6:c.359C>T	p.Pro120Leu	p.P120L	ENST00000334344	NM_152641.2	120	cCa/cTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230418	46230418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	56	298	0	ENST00000334344.6:c.752C>T	p.Ser251Phe	p.S251F	ENST00000334344	NM_152641.2	251	tCt/tTt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111855984	111855984	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1261307883		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	71	418	0	ENST00000341259.2:c.35C>T	p.Ser12Phe	p.S12F	ENST00000341259	NM_005475.2	12	tCt/tTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964135	28964135	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	46	329	0	ENST00000282397.4:c.1767G>A	p.Trp589Ter	p.W589*	ENST00000282397	NM_002019.4	589	tgG/tgA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95579473	95579473	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs765014294		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	38	326	0	ENST00000343455.3:c.1996A>G	p.Thr666Ala	p.T666A	ENST00000343455	NM_177438.2	666	Act/Gct																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472624	88472624	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771818173		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	29	329	0	ENST00000360948.2:c.1931C>T	p.Pro644Leu	p.P644L	ENST00000360948	NM_001012338.2	644	cCa/cTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483943	88483943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	78	529	0	ENST00000360948.2:c.1627G>A	p.Glu543Lys	p.E543K	ENST00000360948	NM_001012338.2	543	Gaa/Aaa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500486	99500486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	67	577	0	ENST00000268035.6:c.3919C>T	p.Pro1307Ser	p.P1307S	ENST00000268035	NM_000875.3	1307	Ccc/Tcc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639126	3639126	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	124	626	0	ENST00000294008.3:c.4513T>G	p.Phe1505Val	p.F1505V	ENST00000294008	NM_032444.2	1505	Ttt/Gtt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820752	3820752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	134	657	0	ENST00000262367.5:c.2699C>T	p.Thr900Ile	p.T900I	ENST00000262367	NM_004380.2	900	aCc/aTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900662	3900663	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	50	519	0	ENST00000262367.5:c.433_434delinsTT	p.Pro145Phe	p.P145F	ENST00000262367	NM_004380.2	145	CCc/TTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858156	9858156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	59	490	0	ENST00000330684.3:c.3245C>T	p.Thr1082Ile	p.T1082I	ENST00000330684	NM_001134407.1	1082	aCc/aTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032252	10032252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	53	540	0	ENST00000330684.3:c.571G>A	p.Val191Met	p.V191M	ENST00000330684	NM_001134407.1	191	Gtg/Atg																																																																														
CDH1	999	MSKCC	GRCh37	16	68847363	68847363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	44	514	0	ENST00000261769.5:c.1285C>G	p.Pro429Ala	p.P429A	ENST00000261769	NM_004360.3	429	Cca/Gca																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032483	12032483	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	37	266	0	ENST00000353533.5:c.919T>A	p.Tyr307Asn	p.Y307N	ENST00000353533	NM_003010.3	307	Tat/Aat																																																																														
NF1	4763	MSKCC	GRCh37	17	29652939	29652939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	54	303	1	ENST00000358273.4:c.4937C>T	p.Thr1646Ile	p.T1646I	ENST00000358273	NM_001042492.2	1646	aCc/aTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42788873	42788873	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1390494320		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	65	366	1	ENST00000575354.2:c.17G>A	p.Arg6Lys	p.R6K	ENST00000575354	NM_015125.3	6	aGg/aAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306757	41306757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	52	375	0	ENST00000373198.4:c.902G>A	p.Gly301Glu	p.G301E	ENST00000373198	NM_133170.3	301	gGg/gAg																																																																														
RAC2	5880	MSKCC	GRCh37	22	37627355	37627355	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs910521882		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	75	739	0	ENST00000249071.6:c.364G>A	p.Asp122Asn	p.D122N	ENST00000249071	NM_002872.4	122	Gac/Aac																																																																														
TP63	8626	MSKCC	GRCh37	3	189607249	189607249	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	37	598	0	ENST00000264731.3:c.1628A>C	p.Tyr543Ser	p.Y543S	ENST00000264731	NM_003722.4	543	tAt/tCt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749394	41749394	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	42	334	0	ENST00000226382.2:c.401A>C	p.Lys134Thr	p.K134T	ENST00000226382	NM_003924.3	134	aAg/aCg																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99802265	99802265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	24	152	0	ENST00000280892.6:c.628C>T	p.Pro210Ser	p.P210S	ENST00000280892	NM_001130678.1	210	Cct/Tct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549440	187549440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	30	448	0	ENST00000441802.2:c.4678C>T	p.Pro1560Ser	p.P1560S	ENST00000441802	NM_005245.3	1560	Ccg/Tcg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629276	187629276	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	54	537	0	ENST00000441802.2:c.1706T>G	p.Phe569Cys	p.F569C	ENST00000441802	NM_005245.3	569	tTt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295339	1295339	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	103	312	3				ENST00000310581	NM_198253.2																																																																																
RAD50	10111	MSKCC	GRCh37	5	131931348	131931348	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	59	375	0	ENST00000265335.6:c.2053C>T	p.Gln685Ter	p.Q685*	ENST00000265335		685	Cag/Tag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523717	176523717	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1196666686		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	109	591	0	ENST00000292408.4:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000292408	NM_213647.1	710	Cga/Tga																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524646	176524646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	89	592	0	ENST00000292408.4:c.2378C>T	p.Ser793Phe	p.S793F	ENST00000292408	NM_213647.1	793	tCc/tTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672641	30672641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	101	527	0	ENST00000376406.3:c.4319C>T	p.Ser1440Phe	p.S1440F	ENST00000376406	NM_014641.2	1440	tCc/tTc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287505	33287505	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775204775		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	81	516	0	ENST00000374542.5:c.1592C>T	p.Ser531Leu	p.S531L	ENST00000374542	NM_001141970.1	531	tCg/tTg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553450	106553450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	29	355	0	ENST00000369096.4:c.1415C>T	p.Ser472Leu	p.S472L	ENST00000369096	NM_001198.3	472	tCa/tTa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026966	6026966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	38	181	0	ENST00000265849.7:c.1430C>T	p.Ser477Phe	p.S477F	ENST00000265849	NM_000535.5	477	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002928	69002928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	43	300	1	ENST00000288368.4:c.2228G>A	p.Arg743Lys	p.R743K	ENST00000288368	NM_024870.2	743	aGg/aAg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737774	145737775	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	GT			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	56	565	0	ENST00000428558.2:c.3055_3055+1delinsAC		p.X1019_splice	ENST00000428558	NM_004260.3	1019																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737779	145737780	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	56	571	1	ENST00000428558.2:c.3050_3051delinsAA	p.Arg1017Lys	p.R1017K	ENST00000428558	NM_004260.3	1017	aGG/aAA																																																																														
TEK	7010	MSKCC	GRCh37	9	27197397	27197397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771377363		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	66	470	2	ENST00000380036.4:c.1709C>T	p.Ser570Leu	p.S570L	ENST00000380036	NM_000459.3	570	tCg/tTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913265	39913265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	87	425	0	ENST00000378444.4:c.4850T>C	p.Leu1617Ser	p.L1617S	ENST00000378444	NM_001123385.1	1617	tTa/tCa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412512	63412512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1383586883		P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	56	477	0	ENST00000330258.3:c.655G>A	p.Glu219Lys	p.E219K	ENST00000330258	NM_152424.3	219	Gag/Aag																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480495	123480495	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	60	365	0	ENST00000371139.4:c.3G>A	p.Met1?	p.M1?	ENST00000371139	NM_001114937.2	1	atG/atA																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672428	30672430	+	frameshift_variant	Frame_Shift_Del	DEL	GTG	GTG	TA			P-0043916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	177	489	1	ENST00000376406.3:c.4530_4532delinsTA	p.Thr1511AsnfsTer64	p.T1511Nfs*64	ENST00000376406	NM_014641.2	1510	ccCACa/ccTAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	445	562	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491360	18491360	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	26	122	0	ENST00000266497.5:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000266497		425	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1424958105		P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	132	320	1	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
RARA	5914	MSKCC	GRCh37	17	38510606	38510606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	479	586	0	ENST00000254066.5:c.860C>T	p.Ser287Leu	p.S287L	ENST00000254066	NM_000964.3	287	tCg/tTg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50358686	50358686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	105	213	0	ENST00000331340.3:c.29C>T	p.Ser10Phe	p.S10F	ENST00000331340	NM_006060.4	10	tCc/tTc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913255		P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	271	490	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777960	3777960	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1266123570		P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1436	412	831	0	ENST00000262367.5:c.7088C>T	p.Pro2363Leu	p.P2363L	ENST00000262367	NM_004380.2	2363	cCg/cTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123256051	123256051	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	135	405	0	ENST00000358487.5:c.1858C>T	p.Gln620Ter	p.Q620*	ENST00000358487	NM_000141.4	620	Caa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518073	8518073	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1480778931		P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	182	339	0	ENST00000356435.5:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000356435		440	Gaa/Aaa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940571	71940571	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760513714		P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	518	591	1	ENST00000298229.2:c.722C>T	p.Ser241Leu	p.S241L	ENST00000298229	NM_001567.3	241	tCg/tTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55946286	55946286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751241917		P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	86	259	0	ENST00000263923.4:c.3893G>A	p.Gly1298Asp	p.G1298D	ENST00000263923	NM_002253.2	1298	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	216	230	0				ENST00000310581	NM_198253.2																																																																																
JAK3	3718	MSKCC	GRCh37	19	17954242	17954242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201419310		P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	379	608	0	ENST00000458235.1:c.367G>A	p.Asp123Asn	p.D123N	ENST00000458235	NM_000215.3	123	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385261	41385261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	275	404	0	ENST00000373198.4:c.700G>A	p.Asp234Asn	p.D234N	ENST00000373198	NM_133170.3	234	Gac/Aac																																																																														
B2M	567	MSKCC	GRCh37	15	45007798	45007801	+	frameshift_variant	Frame_Shift_Del	DEL	TCTA	TCTA	-			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	66	312	0	ENST00000558401.1:c.248_251del	p.Tyr83SerfsTer19	p.Y83Sfs*19	ENST00000558401	NM_004048.2	82	tTCTAt/tt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806210	1806210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	191	633	0	ENST00000260795.2:c.1229C>T	p.Thr410Ile	p.T410I	ENST00000260795		410	aCc/aTc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63662122	63662122	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	121	379	0	ENST00000279873.7:c.226T>C	p.Tyr76His	p.Y76H	ENST00000279873	NM_032199.2	76	Tat/Cat																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279617	123279617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	144	442	0	ENST00000358487.5:c.815G>A	p.Gly272Glu	p.G272E	ENST00000358487	NM_000141.4	272	gGa/gAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125085	46125086	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	50	183	0	ENST00000334344.6:c.272_273del	p.Gln91LeufsTer19	p.Q91Lfs*19	ENST00000334344	NM_152641.2	91	cAG/c																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012443	29012443	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1270070382		P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	173	393	0	ENST00000282397.4:c.428C>T	p.Pro143Leu	p.P143L	ENST00000282397	NM_002019.4	143	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992699	72992699	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778782642		P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	275	552	1	ENST00000268489.5:c.1346G>A	p.Gly449Glu	p.G449E	ENST00000268489	NM_006885.3	449	gGg/gAg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63530103	63530103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1398258340		P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	368	438	0	ENST00000307078.5:c.2332C>T	p.Arg778Trp	p.R778W	ENST00000307078	NM_004655.3	778	Cgg/Tgg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56363681	56363681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	142	300	0	ENST00000348428.3:c.460C>T	p.Pro154Ser	p.P154S	ENST00000348428	NM_006785.3	154	Cct/Tct																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226371	2226372	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	247	563	1	ENST00000398665.3:c.3851_3852delinsTT	p.Ala1284Val	p.A1284V	ENST00000398665	NM_032482.2	1284	gCC/gTT																																																																														
CARM1	10498	MSKCC	GRCh37	19	11032054	11032054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	175	443	0	ENST00000327064.4:c.1619A>G	p.Asn540Ser	p.N540S	ENST00000327064	NM_199141.1	540	aAc/aGc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290252	15290252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	442	646	0	ENST00000263388.2:c.3383C>T	p.Ser1128Phe	p.S1128F	ENST00000263388	NM_000435.2	1128	tCc/tTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967048	18967048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762952797		P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	352	484	0	ENST00000262803.5:c.1763C>T	p.Ser588Leu	p.S588L	ENST00000262803	NM_002911.3	588	tCg/tTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31407029	31407029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	108	412	0	ENST00000344624.3:c.3878C>T	p.Ser1293Phe	p.S1293F	ENST00000344624		1293	tCc/tTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509277	106509278	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0043917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	279	465	0	ENST00000359195.3:c.1271_1272delinsTT	p.Pro424Leu	p.P424L	ENST00000359195	NM_002649.2	424	cCC/cTT																																																																														
STK40	83931	MSKCC	GRCh37	1	36823907	36823907	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1215063514		P-0043956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	93	568	0	ENST00000373129.3:c.275C>T	p.Thr92Ile	p.T92I	ENST00000373129	NM_032017.1	92	aCc/aTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864703	57864703	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1241006818		P-0043956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	96	806	0	ENST00000228682.2:c.2180C>T	p.Thr727Ile	p.T727I	ENST00000228682	NM_005269.2	727	aCt/aTt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729814	41729814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	77	419	0	ENST00000242208.4:c.715G>A	p.Asp239Asn	p.D239N	ENST00000242208	NM_002192.2	239	Gac/Aac																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508094	106508094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1212203463		P-0043956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	39	288	0	ENST00000359195.3:c.88G>A	p.Ala30Thr	p.A30T	ENST00000359195	NM_002649.2	30	Gcc/Acc																																																																														
MET	4233	MSKCC	GRCh37	7	116339843	116339844	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0043956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	50	436	0	ENST00000397752.3:c.705_706del	p.Asp236CysfsTer4	p.D236Cfs*4	ENST00000397752	NM_000245.2	235	atTGat/atat																																																																														
MET	4233	MSKCC	GRCh37	7	116411877	116411887	+	intron_variant	Intron	DEL	AGCTCTTTCTT	AGCTCTTTCTT	-			P-0043956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	778	813	0	ENST00000397752.3:c.2888-26_2888-16del		p.*963*	ENST00000397752	NM_000245.2																																																																																
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0043962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	139	672	0	ENST00000397752.3:c.3028+1del		p.D1010fs	ENST00000397752	NM_000245.2	1010	Gat/at																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363636	40363637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	29	395	0	ENST00000397332.2:c.592dup	p.Glu198GlyfsTer4	p.E198Gfs*4	ENST00000397332	NM_001033082.2	198	gaa/gGaa																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40379639	40379639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	85	706	0	ENST00000293328.3:c.193G>A	p.Val65Met	p.V65M	ENST00000293328	NM_012448.3	65	Gtg/Atg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030774	48030774	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs752164796		P-0043962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	38	315	0	ENST00000234420.5:c.3388G>C	p.Val1130Leu	p.V1130L	ENST00000234420	NM_000179.2	1130	Gtg/Ctg																																																																														
NBN	4683	MSKCC	GRCh37	8	90983407	90983407	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	24	202	0	ENST00000265433.3:c.696del	p.Lys233AsnfsTer6	p.K233Nfs*6	ENST00000265433	NM_002485.4	232	gcC/gc																																																																														
MED12	9968	MSKCC	GRCh37	X	70347184	70347184	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0043962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	80	531	0	ENST00000374080.3:c.2850-2A>T		p.X950_splice	ENST00000374080		950																																																																															
AR	367	MSKCC	GRCh37	X	66766357	66766395	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-	rs749465311		P-0043963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	122	60	0	ENST00000374690.3:c.1382_1420del	p.Gly461_Gly473del	p.G461_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508563	106508563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757016725		P-0043963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	27	382	0	ENST00000359195.3:c.557C>T	p.Ala186Val	p.A186V	ENST00000359195	NM_002649.2	186	gCg/gTg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856520	111856520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	112	359	0	ENST00000341259.2:c.571C>T	p.Pro191Ser	p.P191S	ENST00000341259	NM_005475.2	191	Ccg/Tcg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708494	43708494	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	138	677	0	ENST00000382044.4:c.4802T>C	p.Leu1601Pro	p.L1601P	ENST00000382044	NM_001141980.1	1601	cTg/cCg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672251	30672251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1051478283		P-0043963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	67	708	0	ENST00000376406.3:c.4709C>T	p.Ser1570Leu	p.S1570L	ENST00000376406	NM_014641.2	1570	tCa/tTa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5029843	5029843	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	52	443	0	ENST00000381652.3:c.287A>T	p.Tyr96Phe	p.Y96F	ENST00000381652	NM_004972.3	96	tAt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	336	625	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30105554	30105554	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757417278		P-0043994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	105	491	0	ENST00000331968.5:c.1132G>A	p.Asp378Asn	p.D378N	ENST00000331968	NM_002742.2	378	Gac/Aac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777975	3777975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	200	907	1	ENST00000262367.5:c.7073C>T	p.Pro2358Leu	p.P2358L	ENST00000262367	NM_004380.2	2358	cCt/cTt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646667	23646667	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	96	429	0	ENST00000261584.4:c.1200del	p.Gly401AlafsTer23	p.G401Afs*23	ENST00000261584	NM_024675.3	400	gaA/ga																																																																														
LYN	4067	MSKCC	GRCh37	8	56922527	56922527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	105	529	0	ENST00000519728.1:c.1397A>G	p.Glu466Gly	p.E466G	ENST00000519728	NM_002350.3	466	gAg/gGg																																																																														
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994323	21994323	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0043994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	231	380	0				ENST00000428597																																																																																	
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994323	21994323	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0043994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	231	380	0				ENST00000428597																																																																																	
ATRX	546	MSKCC	GRCh37	X	76938522	76938523	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0043994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	130	204	1	ENST00000373344.5:c.2225_2226delinsAT	p.Ser742Asn	p.S742N	ENST00000373344	NM_000489.3	742	aGC/aAT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs760640852		P-0044013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	35	315	1	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs760640852		P-0044013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	35	315	1	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs760640852		P-0044013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	35	315	1	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7573010	7573010	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs587781664		P-0044013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	24	253	0	ENST00000269305.4:c.1101-2A>G		p.X367_splice	ENST00000269305	NM_001126112.2	367																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132565	11132565	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	49	586	0	ENST00000344626.4:c.2782del	p.Leu928CysfsTer22	p.L928Cfs*22	ENST00000344626	NM_003072.3	927	ttC/tt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0044016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	137	441	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0044016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	91	672	0	ENST00000329236.7:c.1459+1G>T		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																															
TP53	7157	MSKCC	GRCh37	17	7579529	7579530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	161	702	0	ENST00000269305.4:c.157dup	p.Trp53LeufsTer4	p.W53Lfs*4	ENST00000269305	NM_001126112.2	53	tgg/tTgg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120493413	120493413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	67	389	0	ENST00000256646.2:c.2413C>A	p.Leu805Met	p.L805M	ENST00000256646	NM_024408.3	805	Ctg/Atg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437599	110437599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	143	708	0	ENST00000375856.3:c.802G>T	p.Gly268Cys	p.G268C	ENST00000375856	NM_003749.2	268	Ggc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984880	9984880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	54	506	0	ENST00000330684.3:c.1085T>C	p.Val362Ala	p.V362A	ENST00000330684	NM_001134407.1	362	gTg/gCg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	67	280	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	40	295	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	105	576	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	63	438	0	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112175346	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAA	TTGAA	-			P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	73	185	0	ENST00000257430.4:c.4057_4061del	p.Glu1353PhefsTer20	p.E1353Ffs*20	ENST00000257430	NM_000038.5	1352	gTTGAA/g																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871727	35871727	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781464425		P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	107	411	1	ENST00000216797.5:c.779G>A	p.Arg260His	p.R260H	ENST00000216797	NM_020529.2	260	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245459	153245459	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	63	406	0	ENST00000281708.4:c.1732A>C	p.Thr578Pro	p.T578P	ENST00000281708	NM_033632.3	578	Aca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934578		P-0044046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	136	539	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0044046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	212	426	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519996		P-0044046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	285	627	2	ENST00000269305.4:c.395A>T	p.Lys132Met	p.K132M	ENST00000269305	NM_001126112.2	132	aAg/aTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42005561	42005566	+	inframe_deletion	In_Frame_Del	DEL	TCAGAG	TCAGAG	-			P-0044046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	89	451	0	ENST00000219905.7:c.3297_3302del	p.Phe1099_Arg1101delinsLeu	p.F1099_R1101delinsL	ENST00000219905	NM_001164273.1	1099	ttTCAGAGg/ttg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678048	117678048	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	56	305	0	ENST00000368508.3:c.3885del	p.Phe1295LeufsTer37	p.F1295Lfs*37	ENST00000368508	NM_002944.2	1295	ttT/tt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239970	53239970	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	206	608	0	ENST00000375401.3:c.1471A>G	p.Asn491Asp	p.N491D	ENST00000375401	NM_004187.3	491	Aat/Gat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	68	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	134	779	2	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239876	53239876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	100	642	0	ENST00000375401.3:c.1565C>T	p.Ser522Phe	p.S522F	ENST00000375401	NM_004187.3	522	tCc/tTc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67462920	67462920	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202094530		P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	150	600	0	ENST00000327367.4:c.636G>A	p.Met212Ile	p.M212I	ENST00000327367	NM_005902.3	212	atG/atA																																																																														
RFWD2	0	MSKCC	GRCh37	1	175956144	175956144	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	73	398	0	ENST00000367669.3:c.2068G>C	p.Asp690His	p.D690H	ENST00000367669	NM_022457.5	690	Gac/Cac																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99439991	99439991	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	48	348	0	ENST00000268035.6:c.959A>G	p.Tyr320Cys	p.Y320C	ENST00000268035	NM_000875.3	320	tAc/tGc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100042	11100042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	127	797	2	ENST00000344626.4:c.1168G>T	p.Gly390Trp	p.G390W	ENST00000344626	NM_003072.3	390	Ggg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0044108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			700	178	395	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0044108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	2029	628	1	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913273		P-0044108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	14	363	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																																																														
NF2	4771	MSKCC	GRCh37	22	30038230	30038230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	271	347	0	ENST00000338641.4:c.403C>T	p.Pro135Ser	p.P135S	ENST00000338641	NM_000268.3	135	Cct/Tct																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639900	3639900	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs978074181		P-0044108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			821	625	627	0	ENST00000294008.3:c.3739G>A	p.Glu1247Lys	p.E1247K	ENST00000294008	NM_032444.2	1247	Gag/Aag																																																																														
NF2	4771	MSKCC	GRCh37	22	30038255	30038255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	231	315	0	ENST00000338641.4:c.428C>T	p.Ser143Phe	p.S143F	ENST00000338641	NM_000268.3	143	tCt/tTt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175804	176175804	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	403	429	0	ENST00000367669.3:c.311C>G	p.Ser104Cys	p.S104C	ENST00000367669	NM_022457.5	104	tCc/tGc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519893		P-0044119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1241	44	1012	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44937706	44937707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	24	255	0	ENST00000377967.4:c.2897dup	p.Val967CysfsTer12	p.V967Cfs*12	ENST00000377967	NM_021140.2	965	aac/aaCc																																																																														
MITF	4286	MSKCC	GRCh37	3	69787826	69788780	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	ACTCCTGAAATGCTAGGACAAATCTCATTTGAACTCCCAGTCAACTGAGAAATTAAAAGCAGAGAGCAACGACGCTATTTTGTAACTTTGTGCCTTTTAAAATTAACCGAATCTTTCAATTGCTGCTGTAGATTAGAAGTGGCTACTTGGATAAAGGGGAAAGAGCCATTCAACTGATGAATACTATTGTAAAAGTCCAGACTTAGTTCTAGAAAAGGAACGCACAAGAACAATTTCTCCAATAACGTTTTCATTACAGAGCGAAGGAAAGTTCTTCCTCGTTGTTCCAATCCGAGGACAAGCTGATATGTCGCAGCAGCCCAGGGAAGCATGCGAGCTGATAGGAAGTCCTTTTATTTTAAGACAGGCTCGAATGCTAAAACTTTCTTGTGCCAAAACCCTTGACTATTTTATTTTTAAAATAAGCACTTGGCGTGCCCTCGCAGATGTCTGAGCTGAGAGGTCGGGGCGATGGTAGAAGAGCAGTCAGTGTCCATTCTTATTCATATTAAGTAGCCAAGTCTGTACCCTTGAAGCAAGTGGGGAGAGAGGAGGGAGAGGAGCTGCTGACATTGACAATGAATCCAAACAGGAGTTGCACTAGCGGTGTCCACCACGTTGCCTCTCCCCCGCCTGGCCTTCTGGGAGCTGTAGTTTTCGTGGGAGCGGCTCCCCAGGCGAGCTGGGAATGCCCCGCCCGGGCCGAACTACAGATCCCAGGCGGCGCTCGGCCGCCAGCCCCTCCCGCCCGGGTGCGAGTGTAAACTCCCCGCGCTGGGGCGGGCGGCCGCGAGCCGGCGAGCGGGCAGAGCTCGGCACTGCGCCGGGGCGCACGGCTCGGGGGACCCAGGCCCAGCTACCTTCCCTCCGCCCCCGGGCTCTGTTCTCACTTTCCAGCAGTGGAAGGACGGGAAGCGGGAGCCATGCAGTCCGAATCGGGGATCGTGCCGGATTT	ACTCCTGAAATGCTAGGACAAATCTCATTTGAACTCCCAGTCAACTGAGAAATTAAAAGCAGAGAGCAACGACGCTATTTTGTAACTTTGTGCCTTTTAAAATTAACCGAATCTTTCAATTGCTGCTGTAGATTAGAAGTGGCTACTTGGATAAAGGGGAAAGAGCCATTCAACTGATGAATACTATTGTAAAAGTCCAGACTTAGTTCTAGAAAAGGAACGCACAAGAACAATTTCTCCAATAACGTTTTCATTACAGAGCGAAGGAAAGTTCTTCCTCGTTGTTCCAATCCGAGGACAAGCTGATATGTCGCAGCAGCCCAGGGAAGCATGCGAGCTGATAGGAAGTCCTTTTATTTTAAGACAGGCTCGAATGCTAAAACTTTCTTGTGCCAAAACCCTTGACTATTTTATTTTTAAAATAAGCACTTGGCGTGCCCTCGCAGATGTCTGAGCTGAGAGGTCGGGGCGATGGTAGAAGAGCAGTCAGTGTCCATTCTTATTCATATTAAGTAGCCAAGTCTGTACCCTTGAAGCAAGTGGGGAGAGAGGAGGGAGAGGAGCTGCTGACATTGACAATGAATCCAAACAGGAGTTGCACTAGCGGTGTCCACCACGTTGCCTCTCCCCCGCCTGGCCTTCTGGGAGCTGTAGTTTTCGTGGGAGCGGCTCCCCAGGCGAGCTGGGAATGCCCCGCCCGGGCCGAACTACAGATCCCAGGCGGCGCTCGGCCGCCAGCCCCTCCCGCCCGGGTGCGAGTGTAAACTCCCCGCGCTGGGGCGGGCGGCCGCGAGCCGGCGAGCGGGCAGAGCTCGGCACTGCGCCGGGGCGCACGGCTCGGGGGACCCAGGCCCAGCTACCTTCCCTCCGCCCCCGGGCTCTGTTCTCACTTTCCAGCAGTGGAAGGACGGGAAGCGGGAGCCATGCAGTCCGAATCGGGGATCGTGCCGGATTT	-			P-0044140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	76	0	0				ENST00000352241	NM_198159.2			1/10																																																																													
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	35	339	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	83	371	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	98	384	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	190	752	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439945	56439945	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	196	850	0	ENST00000407977.2:c.647C>A	p.Ser216Ter	p.S216*	ENST00000407977		216	tCg/tAg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635217	87635217	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746097417		P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	186	627	2	ENST00000277120.3:c.2269G>A	p.Val757Ile	p.V757I	ENST00000277120		757	Gtc/Atc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425503	49425503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1348	157	932	0	ENST00000301067.7:c.12985C>T	p.Gln4329Ter	p.Q4329*	ENST00000301067	NM_003482.3	4329	Cag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178569	32178569	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1252701920		P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	427	707	0	ENST00000375023.3:c.2825G>A	p.Gly942Glu	p.G942E	ENST00000375023	NM_004557.3	942	gGg/gAg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533631	63533631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	204	897	0	ENST00000307078.5:c.1523A>T	p.Lys508Met	p.K508M	ENST00000307078	NM_004655.3	508	aAg/aTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118347695	118347695	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	96	340	0	ENST00000534358.1:c.3332A>G	p.Asp1111Gly	p.D1111G	ENST00000534358	NM_005933.3	1111	gAt/gGt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30047491	30047491	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	36	394	0	ENST00000331968.5:c.2510C>G	p.Pro837Arg	p.P837R	ENST00000331968	NM_002742.2	837	cCt/cGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786138	3786138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	173	817	0	ENST00000262367.5:c.4627G>A	p.Asp1543Asn	p.D1543N	ENST00000262367	NM_004380.2	1543	Gat/Aat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121207	11121207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	261	656	0	ENST00000344626.4:c.2274G>T	p.Gln758His	p.Q758H	ENST00000344626	NM_003072.3	758	caG/caT																																																																														
XPO1	7514	MSKCC	GRCh37	2	61710170	61710170	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	49	325	0	ENST00000401558.2:c.2734C>T	p.Gln912Ter	p.Q912*	ENST00000401558	NM_003400.3	912	Cag/Tag																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872504	136872504	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	29	292	0	ENST00000241393.3:c.994G>T	p.Gly332Ter	p.G332*	ENST00000241393	NM_003467.2	332	Gga/Tga																																																																														
NF2	4771	MSKCC	GRCh37	22	30077552	30077552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	207	476	0	ENST00000338641.4:c.1699G>T	p.Asp567Tyr	p.D567Y	ENST00000338641	NM_000268.3	567	Gac/Tac																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431070	181431070	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	424	682	0	ENST00000325404.1:c.922del	p.Ile308LeufsTer63	p.I308Lfs*63	ENST00000325404	NM_003106.3	308	Att/tt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417569	139417569	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	435	939	2	ENST00000277541.6:c.475G>T	p.Glu159Ter	p.E159*	ENST00000277541	NM_017617.3	159	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578448	7578452	+	missense_variant	Missense_Mutation	ONP	GCCAT	GCCAT	CCCAG			P-0044186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	237	885	0	ENST00000269305.4:c.478_482delinsCTGGG	p.Met160_Ala161delinsLeuGly	p.M160_A161delinsLG	ENST00000269305	NM_001126112.2	160	ATGGCc/CTGGGc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64126867	64126867	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749166781		P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	57	746	0	ENST00000334205.4:c.73G>A	p.Glu25Lys	p.E25K	ENST00000334205	NM_003942.2	25	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121912666		P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	159	641	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584709	48584709	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	32	311	0	ENST00000342988.3:c.788-1G>C		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199918	128199918	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	57	530	0	ENST00000341105.2:c.1387T>A	p.Ser463Thr	p.S463T	ENST00000341105	NM_032638.4	463	Tcc/Acc																																																																														
TET1	80312	MSKCC	GRCh37	10	70451305	70451305	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	108	567	0	ENST00000373644.4:c.6145T>C	p.Tyr2049His	p.Y2049H	ENST00000373644	NM_030625.2	2049	Tac/Cac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878158	151878158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	66	454	0	ENST00000262189.6:c.6787G>A	p.Gly2263Ser	p.G2263S	ENST00000262189	NM_170606.2	2263	Ggc/Agc																																																																														
NBN	4683	MSKCC	GRCh37	8	90958459	90958459	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs201781110		P-0044207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	32	279	0	ENST00000265433.3:c.1979G>C	p.Arg660Thr	p.R660T	ENST00000265433	NM_002485.4	660	aGa/aCa																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0044290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	157	488	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	56	332	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139818310	139818310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	90	522	0	ENST00000247668.2:c.1145A>G	p.Tyr382Cys	p.Y382C	ENST00000247668	NM_021138.3	382	tAc/tGc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47144879	47144879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	223	353	0	ENST00000409792.3:c.4874G>A	p.Arg1625His	p.R1625H	ENST00000409792	NM_014159.6	1625	cGt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593605	55593610	+	inframe_deletion	In_Frame_Del	DEL	GAAGGT	GAAGGT	-			P-0044303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	283	335	0	ENST00000288135.5:c.1671_1676del	p.Trp557_Val559delinsCys	p.W557_V559delinsC	ENST00000288135	NM_000222.2	557	tgGAAGGTt/tgt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0044303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	219	591	3	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281108	49281108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	64	548	0	ENST00000282018.3:c.155G>A	p.Gly52Glu	p.G52E	ENST00000282018	NM_020377.2	52	gGa/gAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361225	66361225	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	112	305	0	ENST00000273854.3:c.947T>A	p.Ile316Asn	p.I316N	ENST00000273854	NM_004439.5	316	aTc/aAc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436688	52436713	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATCTGTAGGAGAGAAGAAGACTGAG	AATCTGTAGGAGAGAAGAAGACTGAG	CATC			P-0044307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	294	487	2	ENST00000460680.1:c.1984-23_1986delinsGATG		p.X662_splice	ENST00000460680	NM_004656.3	662																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	105	474	0				ENST00000310581	NM_198253.2																																																																																
MTOR	2475	MSKCC	GRCh37	1	11169376	11169376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	118	446	0	ENST00000361445.4:c.7499T>A	p.Ile2500Asn	p.I2500N	ENST00000361445	NM_004958.3	2500	aTt/aAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40709551	40709551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568484928		P-0044322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	129	457	0	ENST00000373198.4:c.4351G>A	p.Glu1451Lys	p.E1451K	ENST00000373198	NM_133170.3	1451	Gag/Aag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217305	123217305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			62	77	247	0	ENST00000218089.9:c.2959C>T	p.Pro987Ser	p.P987S	ENST00000218089	NM_001042749.1	987	Ccg/Tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs869312782		P-0044322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	353	815	0	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023943	27023943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			95	17	75	0	ENST00000324856.7:c.1049C>T	p.Ser350Leu	p.S350L	ENST00000324856	NM_006015.4	350	tCg/tTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112602	115112602	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			717	384	835	0	ENST00000257566.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000257566	NM_016569.3	380	Gag/Cag																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023262	33023262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	240	754	0	ENST00000300177.4:c.371C>G	p.Ser124Cys	p.S124C	ENST00000300177	NM_001191322.1	124	tCt/tGt																																																																														
EZH1	2145	MSKCC	GRCh37	17	40855827	40855827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	214	416	0	ENST00000428826.2:c.2029G>T	p.Asp677Tyr	p.D677Y	ENST00000428826		677	Gat/Tat																																																																														
EZH1	2145	MSKCC	GRCh37	17	40855839	40855839	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0044322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	178	362	1	ENST00000428826.2:c.2018-1G>T		p.X673_splice	ENST00000428826		673																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11135035	11135035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	283	647	1	ENST00000344626.4:c.3002C>T	p.Ser1001Phe	p.S1001F	ENST00000344626	NM_003072.3	1001	tCt/tTt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053201	180053201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			750	90	828	0	ENST00000261937.6:c.1168A>G	p.Thr390Ala	p.T390A	ENST00000261937	NM_182925.4	390	Aca/Gca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	70	423	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	27	241	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231296	98231296	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	75	450	0	ENST00000331920.6:c.1987C>T	p.Gln663Ter	p.Q663*	ENST00000331920	NM_000264.3	663	Cag/Tag																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729662	162729662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	93	435	1	ENST00000367921.3:c.748G>T	p.Val250Leu	p.V250L	ENST00000367921	NM_006182.2	250	Gtg/Ttg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658556		P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	26	109	0	ENST00000304494.5:c.44G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tGg/tAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658556		P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	26	109	0	ENST00000304494.5:c.44G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	97	476	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
EGFR	1956	MSKCC	GRCh37	7	55268927	55268927	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1289194907		P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	74	480	0	ENST00000275493.2:c.2993A>G	p.Tyr998Cys	p.Y998C	ENST00000275493	NM_005228.3	998	tAc/tGc																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944761	31944761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	44	147	0	ENST00000340398.3:c.340G>T	p.Ala114Ser	p.A114S	ENST00000340398	NM_001013699.2	114	Gct/Tct																																																																														
POLE	5426	MSKCC	GRCh37	12	133209331	133209331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	201	373	0	ENST00000320574.5:c.6055G>T	p.Ala2019Ser	p.A2019S	ENST00000320574	NM_006231.2	2019	Gct/Tct																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061474	38061474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	72	321	0	ENST00000250448.2:c.515C>T	p.Pro172Leu	p.P172L	ENST00000250448	NM_004496.3	172	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857969	9857969	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs746900457		P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	102	395	0	ENST00000330684.3:c.3432C>A	p.Asn1144Lys	p.N1144K	ENST00000330684	NM_001134407.1	1144	aaC/aaA																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641440	23641440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	78	554	0	ENST00000261584.4:c.2035C>G	p.Pro679Ala	p.P679A	ENST00000261584	NM_024675.3	679	Cca/Gca																																																																														
ERF	2077	MSKCC	GRCh37	19	42752720	42752720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	74	476	0	ENST00000222329.4:c.1544G>T	p.Gly515Val	p.G515V	ENST00000222329	NM_006494.2	515	gGg/gTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42791007	42791007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	34	325	0	ENST00000575354.2:c.152C>G	p.Pro51Arg	p.P51R	ENST00000575354	NM_015125.3	51	cCc/cGc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902262	50902262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	150	546	0	ENST00000440232.2:c.154G>T	p.Glu52Ter	p.E52*	ENST00000440232	NM_002691.3	52	Gag/Tag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444426	50444426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	81	290	0	ENST00000331340.3:c.356G>T	p.Cys119Phe	p.C119F	ENST00000331340	NM_006060.4	119	tGt/tTt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391128	139391129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	109	438	0	ENST00000277541.6:c.7062dup	p.Ala2355CysfsTer152	p.A2355Cfs*152	ENST00000277541	NM_017617.3	2354	-/T																																																																														
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0044331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	223	549	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	92	208	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579314	7579314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0044337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	42	438	1	ENST00000269305.4:c.373A>G	p.Thr125Ala	p.T125A	ENST00000269305	NM_001126112.2	125	Acg/Gcg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55220295	55220295	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	183	531	2	ENST00000275493.2:c.685A>T	p.Ser229Cys	p.S229C	ENST00000275493	NM_005228.3	229	Agt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100152	27100152	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	121	462	2	ENST00000324856.7:c.3951del	p.Met1318CysfsTer163	p.M1318Cfs*163	ENST00000324856	NM_006015.4	1316	tcG/tc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946375	71946375	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	73	573	1	ENST00000298229.2:c.2539del	p.Ser847AlafsTer7	p.S847Afs*7	ENST00000298229	NM_001567.3	847	Agc/gc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246452	46246453	+	stop_gained,protein_altering_variant	Nonsense_Mutation	INS	-	-	ATT			P-0044337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	27	203	0	ENST00000334344.6:c.4547_4548insTTA	p.Lys1516delinsAsnTer	p.K1516delinsN*	ENST00000334344	NM_152641.2	1516	aag/aATTag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435496	110435496	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	40	323	2	ENST00000375856.3:c.2905A>G	p.Ser969Gly	p.S969G	ENST00000375856	NM_003749.2	969	Agc/Ggc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223928	36223928	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	59	538	0	ENST00000222270.7:c.6478del	p.Thr2160ProfsTer16	p.T2160Pfs*16	ENST00000222270	NM_014727.1	2160	Acc/cc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0044396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	105	553	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4102447	4102447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	88	654	0	ENST00000262948.5:c.455G>A	p.Gly152Asp	p.G152D	ENST00000262948	NM_030662.3	152	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0044405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	179	806	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591798	48591798	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	32	338	3	ENST00000342988.3:c.961G>T	p.Glu321Ter	p.E321*	ENST00000342988	NM_005359.5	321	Gag/Tag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225449662	225449662	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs867746441		P-0044405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	102	375	0	ENST00000264414.4:c.65C>T	p.Pro22Leu	p.P22L	ENST00000264414	NM_003590.4	22	cCg/cTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48923090	48923090	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0044405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	44	213	0	ENST00000267163.4:c.540-2A>G		p.X180_splice	ENST00000267163	NM_000321.2	180																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281105	49281105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	66	654	1	ENST00000282018.3:c.152G>T	p.Trp51Leu	p.W51L	ENST00000282018	NM_020377.2	51	tGg/tTg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40468897	40468897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	11	260	0	ENST00000264657.5:c.2167G>T	p.Asp723Tyr	p.D723Y	ENST00000264657	NM_139276.2	723	Gac/Tac																																																																														
ALK	238	MSKCC	GRCh37	2	29448419	29448419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	121	962	1	ENST00000389048.3:c.3080C>A	p.Pro1027Gln	p.P1027Q	ENST00000389048	NM_004304.4	1027	cCg/cAg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564662	86564662	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	127	707	0	ENST00000274376.6:c.395del	p.Gly132AlafsTer42	p.G132Afs*42	ENST00000274376	NM_002890.2	132	Ggc/gc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152853904	152853904	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	28	471	0	ENST00000406277.2:c.660T>A	p.Asn220Lys	p.N220K	ENST00000406277	NM_152274.4	220	aaT/aaA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0044436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	101	479	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577113	7577113	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	160	695	0	ENST00000269305.4:c.825T>A	p.Cys275Ter	p.C275*	ENST00000269305	NM_001126112.2	275	tgT/tgA																																																																														
FH	2271	MSKCC	GRCh37	1	241680561	241680561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	152	410	0	ENST00000366560.3:c.188C>G	p.Pro63Arg	p.P63R	ENST00000366560	NM_000143.3	63	cCa/cGa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864132	57864132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	169	547	0	ENST00000228682.2:c.1609G>T	p.Val537Phe	p.V537F	ENST00000228682	NM_005269.2	537	Gtc/Ttc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	153	358	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	90	229	0				ENST00000310581	NM_198253.2																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0044440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	94	280	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099341	157099341	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs587779741		P-0044440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	31	303	0	ENST00000346085.5:c.278A>T	p.His93Leu	p.H93L	ENST00000346085	NM_020732.3	93	cAc/cTc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250187	110250187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	35	627	0	ENST00000374672.4:c.488C>T	p.Ala163Val	p.A163V	ENST00000374672	NM_004235.4	163	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	276	625	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
NUP93	9688	MSKCC	GRCh37	16	56866264	56866264	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1374778377		P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	56	290	0	ENST00000308159.5:c.1309C>G	p.Leu437Val	p.L437V	ENST00000308159	NM_014669.4	437	Ctc/Gtc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692895	89692895	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	102	339	0	ENST00000371953.3:c.379G>T	p.Gly127Ter	p.G127*	ENST00000371953	NM_000314.4	127	Gga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38981989	38981989	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	66	336	0	ENST00000357387.3:c.733C>T	p.Arg245Ter	p.R245*	ENST00000357387	NM_152756.3	245	Cga/Tga																																																																														
RFWD2	0	MSKCC	GRCh37	1	176015438	176015438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	122	317	0	ENST00000367669.3:c.1300G>T	p.Asp434Tyr	p.D434Y	ENST00000367669	NM_022457.5	434	Gac/Tac																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570231	95570231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	100	257	0	ENST00000343455.3:c.3502G>T	p.Val1168Phe	p.V1168F	ENST00000343455	NM_177438.2	1168	Gtt/Ttt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99169299	99169299	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1281122001		P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	103	516	0	ENST00000074304.5:c.1229G>C	p.Arg410Thr	p.R410T	ENST00000074304	NM_001134224.1	410	aGa/aCa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133781	55133781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	95	460	0	ENST00000257290.5:c.994G>T	p.Val332Phe	p.V332F	ENST00000257290	NM_006206.4	332	Gtc/Ttc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143181670	143181670	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	93	419	0	ENST00000262992.4:c.663del	p.Asp222IlefsTer6	p.D222Ifs*6	ENST00000262992	NM_001101669.1	221	aaA/aa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532907	187532907	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	60	284	0	ENST00000441802.2:c.9486C>G	p.Tyr3162Ter	p.Y3162*	ENST00000441802	NM_005245.3	3162	taC/taG																																																																														
RAD50	10111	MSKCC	GRCh37	5	131893126	131893126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	54	289	0	ENST00000265335.6:c.110C>T	p.Pro37Leu	p.P37L	ENST00000265335		37	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662696	117662696	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	87	325	0	ENST00000368508.3:c.4769C>A	p.Ser1590Ter	p.S1590*	ENST00000368508	NM_002944.2	1590	tCa/tAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	181	381	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	161	451	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	161	451	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	161	451	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
ATM	472	MSKCC	GRCh37	11	108200963	108200963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	65	311	0	ENST00000278616.4:c.7330G>A	p.Glu2444Lys	p.E2444K	ENST00000278616	NM_000051.3	2444	Gag/Aag																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	135	450	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108119795	108119795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs772529339		P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	56	232	0	ENST00000278616.4:c.1201C>T	p.Gln401Ter	p.Q401*	ENST00000278616	NM_000051.3	401	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108119700	108119700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	51	191	0	ENST00000278616.4:c.1106C>G	p.Ser369Cys	p.S369C	ENST00000278616	NM_000051.3	369	tCt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	231	395	1				ENST00000310581	NM_198253.2																																																																																
SPEN	23013	MSKCC	GRCh37	1	16265833	16265833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	260	703	0	ENST00000375759.3:c.10906G>A	p.Glu3636Lys	p.E3636K	ENST00000375759	NM_015001.2	3636	Gag/Aag																																																																														
MPL	4352	MSKCC	GRCh37	1	43803850	43803850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	223	699	0	ENST00000372470.3:c.160G>A	p.Glu54Lys	p.E54K	ENST00000372470	NM_005373.2	54	Gag/Aag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336236	73336236	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	59	238	0	ENST00000377767.4:c.2167G>C	p.Glu723Gln	p.E723Q	ENST00000377767	NM_014953.3	723	Gag/Cag																																																																														
BLM	641	MSKCC	GRCh37	15	91292973	91292973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	112	514	0	ENST00000355112.3:c.475G>A	p.Asp159Asn	p.D159N	ENST00000355112	NM_000057.2	159	Gac/Aac																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402552	20402552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	146	421	1	ENST00000346618.3:c.89C>T	p.Ala30Val	p.A30V	ENST00000346618	NM_001949.4	30	gCa/gTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197802	123197803	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0044488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	90	223	0	ENST00000218089.9:c.1928_1929del	p.Glu643ValfsTer17	p.E643Vfs*17	ENST00000218089	NM_001042749.1	642	gaAGag/gaag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857046	9857046	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774039446		P-0044497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	22	252	0	ENST00000330684.3:c.4355G>A	p.Arg1452His	p.R1452H	ENST00000330684	NM_001134407.1	1452	cGc/cAc																																																																														
BCL2	596	MSKCC	GRCh37	18	60985785	60985785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	39	311	0	ENST00000333681.4:c.115C>T	p.Pro39Ser	p.P39S	ENST00000333681		39	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0044501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	350	751	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953229	81953229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	95	379	2	ENST00000359376.3:c.2195G>A	p.Arg732His	p.R732H	ENST00000359376	NM_002661.3	732	cGc/cAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	49	327	0	ENST00000274335.5:c.1718T>C	p.Leu573Pro	p.L573P	ENST00000274335		573	cTg/cCg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57857781	57857781	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	290	608	0	ENST00000228682.2:c.101-1G>A		p.X34_splice	ENST00000228682	NM_005269.2	34																																																																															
SOCS1	8651	MSKCC	GRCh37	16	11348837	11348837	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	29	126	0	ENST00000332029.2:c.499C>G	p.Arg167Gly	p.R167G	ENST00000332029	NM_003745.1	167	Cgc/Ggc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0044518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	85	528	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883158	37883158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	225	892	1	ENST00000269571.5:c.3061G>A	p.Glu1021Lys	p.E1021K	ENST00000269571		1021	Gag/Aag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71096135	71096135	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	109	403	1	ENST00000318789.4:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000318789	NM_032682.5	208	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830454	72830455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	118	432	0	ENST00000268489.5:c.6126dup	p.Pro2043SerfsTer113	p.P2043Sfs*113	ENST00000268489	NM_006885.3	2042	-/T																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918081	50918081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	143	829	0	ENST00000440232.2:c.2398C>T	p.Pro800Ser	p.P800S	ENST00000440232	NM_002691.3	800	Cca/Tca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52712607	52712607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542945393		P-0044518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	96	363	0	ENST00000394830.3:c.145G>A	p.Val49Met	p.V49M	ENST00000394830	NM_018313.4	49	Gtg/Atg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918294	44918295	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0044518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	88	157	0	ENST00000377967.4:c.920dup	p.Tyr307Ter	p.Y307*	ENST00000377967	NM_021140.2	307	tac/tAac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579478	7579478	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	304	551	0	ENST00000269305.4:c.209del	p.Ala70ValfsTer53	p.A70Vfs*53	ENST00000269305	NM_001126112.2	70	gCt/gt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	95	277	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	79	333	2	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	81	322	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	352	595	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244943	46244943	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	118	460	0	ENST00000334344.6:c.3037C>T	p.Gln1013Ter	p.Q1013*	ENST00000334344	NM_152641.2	1013	Caa/Taa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248611	10248611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	208	541	0	ENST00000340748.4:c.4142C>T	p.Ala1381Val	p.A1381V	ENST00000340748		1381	gCc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	29	409	1	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048756	180048756	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	60	585	0	ENST00000261937.6:c.1806del	p.His602GlnfsTer37	p.H602Qfs*37	ENST00000261937	NM_182925.4	602	caC/ca																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1388678905		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	83	618	2	ENST00000434045.2:c.686del	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	237	607	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993903	72993903	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751544438		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	169	494	0	ENST00000268489.5:c.142G>A	p.Gly48Arg	p.G48R	ENST00000268489	NM_006885.3	48	Ggg/Agg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256699	46256699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749607074		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	96	398	0	ENST00000371998.3:c.755G>A	p.Arg252His	p.R252H	ENST00000371998		252	cGc/cAc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	221	684	0	ENST00000318560.5:c.2352del	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216380	7216380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	196	565	0	ENST00000380728.2:c.868del	p.Gln290SerfsTer55	p.Q290Sfs*55	ENST00000380728		290	Cag/ag																																																																														
NBN	4683	MSKCC	GRCh37	8	90967511	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	87	259	0	ENST00000265433.3:c.1396dup	p.Arg466LysfsTer5	p.R466Kfs*5	ENST00000265433	NM_002485.4	466	agg/aAgg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954642	17954643	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	245	673	0	ENST00000458235.1:c.251dup	p.Ser85GlufsTer46	p.S85Efs*46	ENST00000458235	NM_000215.3	84	ccg/ccCg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262460	16262465	+	inframe_deletion	In_Frame_Del	DEL	CCCCCA	CCCCCA	-	rs773711901		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	42	239	0	ENST00000375759.3:c.9735_9740del	p.Thr3246_Pro3247del	p.T3246_P3247del	ENST00000375759	NM_015001.2	3242	gCCCCCAcc/gcc																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518587	69518587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114327249		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	105	491	0	ENST00000294312.3:c.58G>A	p.Val20Met	p.V20M	ENST00000294312	NM_005117.2	20	Gtg/Atg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339110	65339111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	131	339	4	ENST00000342505.4:c.425dup	p.Ile143AspfsTer9	p.I143Dfs*9	ENST00000342505	NM_002227.2	142	aag/aaAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230604	46230604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	144	383	0	ENST00000334344.6:c.853C>T	p.Arg285Trp	p.R285W	ENST00000334344	NM_152641.2	285	Cgg/Tgg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701932	43701933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	62	147	0	ENST00000382044.4:c.5312dup	p.Leu1771PhefsTer24	p.L1771Ffs*24	ENST00000382044	NM_001141980.1	1771	ttg/ttTg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682809	190682810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1275949235		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	16	245	0	ENST00000441310.2:c.492dup	p.Cys165MetfsTer2	p.C165Mfs*2	ENST00000441310	NM_000534.4	162	gca/gcAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65312344	65312344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	176	454	0	ENST00000342505.4:c.1975C>T	p.Arg659Cys	p.R659C	ENST00000342505	NM_002227.2	659	Cgc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76875919	76875919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	78	316	0	ENST00000373344.5:c.5216G>A	p.Arg1739Gln	p.R1739Q	ENST00000373344	NM_000489.3	1739	cGa/cAa																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981613	101981614	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	58	151	0	ENST00000282441.5:c.40dup	p.Gln14ProfsTer98	p.Q14Pfs*98	ENST00000282441	NM_001130145.2	12	gcc/gCcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213515	36213515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746928288		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	250	754	1	ENST00000222270.7:c.2617C>T	p.Arg873Cys	p.R873C	ENST00000222270	NM_014727.1	873	Cgt/Tgt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739002	145739002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769675968		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	104	541	2	ENST00000428558.2:c.2153C>T	p.Ala718Val	p.A718V	ENST00000428558	NM_004260.3	718	gCg/gTg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988376	36988376	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751469975		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	79	314	1	ENST00000354822.5:c.277G>A	p.Ala93Thr	p.A93T	ENST00000354822	NM_001079668.2	93	Gcc/Acc																																																																														
CD79A	973	MSKCC	GRCh37	19	42384740	42384740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	47	354	0	ENST00000221972.3:c.502C>T	p.Arg168Ter	p.R168*	ENST00000221972	NM_021601.3	168	Cga/Tga																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470994	25470994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	247	617	0	ENST00000264709.3:c.767C>A	p.Pro256His	p.P256H	ENST00000264709	NM_175629.2	256	cCc/cAc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497244	149497245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	210	579	0	ENST00000261799.4:c.3073dup	p.Leu1025ProfsTer3	p.L1025Pfs*3	ENST00000261799	NM_002609.3	1025	ctg/cCtg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39745033	39745033	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	138	395	1	ENST00000361337.2:c.1822+1G>A		p.X608_splice	ENST00000361337	NM_003286.2	608																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255866	16255866	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	77	342	1	ENST00000375759.3:c.3131T>A	p.Ile1044Asn	p.I1044N	ENST00000375759	NM_015001.2	1044	aTt/aAt																																																																														
JUN	3725	MSKCC	GRCh37	1	59248202	59248203	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	17	79	0	ENST00000371222.2:c.540_541del	p.Leu181GlufsTer128	p.L181Efs*128	ENST00000371222	NM_002228.3	180	gcGCtg/gctg																																																																														
TET1	80312	MSKCC	GRCh37	10	70450886	70450886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	147	450	0	ENST00000373644.4:c.5726C>A	p.Pro1909His	p.P1909H	ENST00000373644	NM_030625.2	1909	cCt/cAt																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741373	17741373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	145	611	0	ENST00000250003.3:c.48del	p.Asp17ThrfsTer34	p.D17Tfs*34	ENST00000250003	NM_002478.4	15	gCc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939801	71939801	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781357595		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	84	643	0	ENST00000298229.2:c.428C>T	p.Pro143Leu	p.P143L	ENST00000298229	NM_001567.3	143	cCg/cTg																																																																														
ATM	472	MSKCC	GRCh37	11	108236131	108236131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs879253964		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	152	479	0	ENST00000278616.4:c.9067G>A	p.Gly3023Ser	p.G3023S	ENST00000278616	NM_000051.3	3023	Ggc/Agc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244091	46244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	57	399	0	ENST00000334344.6:c.2185C>T	p.Pro729Ser	p.P729S	ENST00000334344	NM_152641.2	729	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428255	49428255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	213	600	0	ENST00000301067.7:c.10445G>T	p.Arg3482Leu	p.R3482L	ENST00000301067	NM_003482.3	3482	cGg/cTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68847249	68847249	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556110297		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	200	446	0	ENST00000261769.5:c.1171G>A	p.Val391Ile	p.V391I	ENST00000261769	NM_004360.3	391	Gtc/Atc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7976199	7976199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	128	508	0	ENST00000319144.4:c.1996C>T	p.Arg666Cys	p.R666C	ENST00000319144	NM_001139.2	666	Cgc/Tgc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40468893	40468893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	82	297	0	ENST00000264657.5:c.2171T>C	p.Leu724Pro	p.L724P	ENST00000264657	NM_139276.2	724	cTg/cCg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56363640	56363640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	38	292	2	ENST00000348428.3:c.419C>T	p.Ala140Val	p.A140V	ENST00000348428	NM_006785.3	140	gCt/gTt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1623996	1623996	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748050498		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	211	599	1	ENST00000344749.5:c.503C>T	p.Thr168Met	p.T168M	ENST00000344749	NM_001136139.2	168	aCg/aTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5245817	5245817	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs774918692		P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	107	652	0	ENST00000357368.4:c.958A>G	p.Ile320Val	p.I320V	ENST00000357368	NM_002850.3	320	Att/Gtt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45873482	45873482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	152	474	0	ENST00000391945.4:c.14T>C	p.Val5Ala	p.V5A	ENST00000391945	NM_000400.3	5	gTg/gCg																																																																														
MITF	4286	MSKCC	GRCh37	3	70014316	70014316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	151	494	1	ENST00000352241.4:c.1480C>T	p.Leu494Phe	p.L494F	ENST00000352241	NM_198159.2	494	Ctt/Ttt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1955189	1955190	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	165	473	0	ENST00000382895.3:c.2281dup	p.Leu761ProfsTer21	p.L761Pfs*21	ENST00000382895	NM_133330.2	759	tgc/tgCc																																																																														
KIT	3815	MSKCC	GRCh37	4	55564606	55564607	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	192	478	0	ENST00000288135.5:c.498dup	p.Lys167GlnfsTer58	p.K167Qfs*58	ENST00000288135	NM_000222.2	165	gac/gaCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532743	187532743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	80	451	0	ENST00000441802.2:c.9650T>C	p.Ile3217Thr	p.I3217T	ENST00000441802	NM_005245.3	3217	aTt/aCt																																																																														
SDHA	6389	MSKCC	GRCh37	5	228354	228354	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	29	275	0	ENST00000264932.6:c.676A>G	p.Met226Val	p.M226V	ENST00000264932	NM_004168.2	226	Atg/Gtg																																																																														
TERT	7015	MSKCC	GRCh37	5	1294981	1294981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	32	76	0	ENST00000310581.5:c.124G>A	p.Gly42Arg	p.G42R	ENST00000310581	NM_198253.2	42	Ggg/Agg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030820	69030820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	74	326	0	ENST00000288368.4:c.3362T>C	p.Phe1121Ser	p.F1121S	ENST00000288368	NM_024870.2	1121	tTc/tCc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485945	8485945	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	128	359	1	ENST00000356435.5:c.2872T>C	p.Tyr958His	p.Y958H	ENST00000356435		958	Tat/Cat																																																																														
AR	367	MSKCC	GRCh37	X	66931372	66931372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	182	560	1	ENST00000374690.3:c.2014C>T	p.Pro672Ser	p.P672S	ENST00000374690	NM_000044.3	672	Ccc/Tcc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349939	70349940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	241	636	0	ENST00000374080.3:c.3924dup	p.Asp1309ArgfsTer6	p.D1309Rfs*6	ENST00000374080		1308	caa/cAaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262139	16262139	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	85	242	0	ENST00000375759.3:c.9404A>C	p.Gln3135Pro	p.Q3135P	ENST00000375759	NM_015001.2	3135	cAg/cCg																																																																														
STK40	83931	MSKCC	GRCh37	1	36826926	36826926	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769201571		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	148	433	0	ENST00000373129.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000373129	NM_032017.1	3	cGg/cAg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115282439	115282439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	172	366	0	ENST00000438362.2:c.211C>T	p.Arg71Cys	p.R71C	ENST00000438362	NM_001242891.1	71	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782292		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	166	368	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432067	121432067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	80	537	0	ENST00000257555.6:c.814C>T	p.Arg272Cys	p.R272C	ENST00000257555		272	Cgc/Tgc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435391	121435391	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193922580		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	211	520	0	ENST00000257555.6:c.1424C>T	p.Pro475Leu	p.P475L	ENST00000257555		475	cCg/cTg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061125	38061196	+	inframe_deletion	In_Frame_Del	DEL	CTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCG	CTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCG	-			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	198	106	0	ENST00000250448.2:c.793_864del	p.Arg265_Lys288del	p.R265_K288del	ENST00000250448	NM_004496.3	265	CGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAG/-																																																																														
MGA	23269	MSKCC	GRCh37	15	41991060	41991060	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	95	237	0	ENST00000219905.7:c.2014-1G>T		p.X672_splice	ENST00000219905	NM_001164273.1	672																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	134	525	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3115040	3115040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	209	527	0	ENST00000078429.4:c.575A>G	p.Tyr192Cys	p.Y192C	ENST00000078429	NM_002067.2	192	tAc/tGc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5229680	5229680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	10	15	0	ENST00000357368.4:c.2171C>A	p.Pro724Gln	p.P724Q	ENST00000357368	NM_002850.3	724	cCg/cAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5239041	5239041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374725933		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	53	474	1	ENST00000357368.4:c.1738G>A	p.Val580Met	p.V580M	ENST00000357368	NM_002850.3	580	Gtg/Atg																																																																														
INSR	3643	MSKCC	GRCh37	19	7117189	7117189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757085718		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	198	519	1	ENST00000302850.5:c.4027C>T	p.Arg1343Trp	p.R1343W	ENST00000302850	NM_000208.2	1343	Cgg/Tgg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354247	15354247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	154	550	0	ENST00000263377.2:c.2633C>A	p.Ala878Asp	p.A878D	ENST00000263377	NM_058243.2	878	gCt/gAt																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	119	602	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
ERF	2077	MSKCC	GRCh37	19	42753645	42753645	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	124	571	2	ENST00000222329.4:c.619C>T	p.Arg207Ter	p.R207*	ENST00000222329	NM_006494.2	207	Cga/Tga																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128015227	128015227	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771245959		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	156	362	1	ENST00000285398.2:c.2294G>A	p.Arg765Gln	p.R765Q	ENST00000285398	NM_000122.1	765	cGg/cAg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1805543	1805543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886043604		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	142	477	0	ENST00000260795.2:c.1055C>T	p.Ala352Val	p.A352V	ENST00000260795		352	gCg/gTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31429616	31429616	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	40	345	0	ENST00000344624.3:c.3182A>C	p.Lys1061Thr	p.K1061T	ENST00000344624		1061	aAg/aCg																																																																														
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	117	240	0	ENST00000257430.4:c.4393_4394dup	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038401	180038401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	182	532	0	ENST00000261937.6:c.3616G>C	p.Ala1206Pro	p.A1206P	ENST00000261937	NM_182925.4	1206	Gcc/Ccc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043465	180043465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1451816005		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	185	495	0	ENST00000261937.6:c.3121C>T	p.Arg1041Trp	p.R1041W	ENST00000261937	NM_182925.4	1041	Cgg/Tgg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	151	549	3	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128347843	128347843	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758476607		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	160	395	1	ENST00000265960.3:c.662C>T	p.Pro221Leu	p.P221L	ENST00000265960	NM_001006617.1	221	cCg/cTg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	177	484	1	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279834	46279836	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs767107142		P-0044550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	54	320	0	ENST00000371998.3:c.3762_3764del	p.Gln1276del	p.Q1276del	ENST00000371998		1254	CAA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0044582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	148	696	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0044582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	99	493	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175604	112175604	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	85	385	0	ENST00000257430.4:c.4313del	p.Thr1438AsnfsTer35	p.T1438Nfs*35	ENST00000257430	NM_000038.5	1438	aCa/aa																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96920601	96920601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746883021		P-0044582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	46	472	0	ENST00000258439.3:c.379C>T	p.Arg127Cys	p.R127C	ENST00000258439	NM_001193304.2	127	Cgt/Tgt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285704	87285704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	70	629	0	ENST00000277120.3:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000277120		14	cGg/cAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396808	139396808	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	83	783	0	ENST00000277541.6:c.5300T>C	p.Leu1767Pro	p.L1767P	ENST00000277541	NM_017617.3	1767	cTc/cCc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577526	64577526	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	286	640	0	ENST00000337652.1:c.56del	p.Val19GlyfsTer100	p.V19Gfs*100	ENST00000337652	NM_130803.2	19	gTg/gg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161243	56161243	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	191	316	0	ENST00000399503.3:c.1112C>G	p.Ser371Ter	p.S371*	ENST00000399503	NM_005921.1	371	tCa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913527		P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	149	320	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	224	203	0	ENST00000397062.3:c.72G>C	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	187	467	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114917829	114917829	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	58	414	0	ENST00000543371.1:c.1318+1G>A		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279675	123279675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	43	293	0	ENST00000358487.5:c.757C>T	p.Pro253Ser	p.P253S	ENST00000358487	NM_000141.4	253	Cct/Tct																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864774	57864774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	208	592	0	ENST00000228682.2:c.2251C>G	p.Leu751Val	p.L751V	ENST00000228682	NM_005269.2	751	Ctg/Gtg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106747	27106747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	281	513	0	ENST00000324856.7:c.6358G>A	p.Glu2120Lys	p.E2120K	ENST00000324856	NM_006015.4	2120	Gaa/Aaa																																																																														
RET	5979	MSKCC	GRCh37	10	43595962	43595962	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1488040686		P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	224	625	1	ENST00000355710.3:c.129C>A	p.Asp43Glu	p.D43E	ENST00000355710	NM_020975.4	43	gaC/gaA																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528113	103528113	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	34	319	0	ENST00000355739.4:c.3421G>T	p.Gly1141Ter	p.G1141*	ENST00000355739	NM_000123.3	1141	Gga/Tga																																																																														
IDH2	3418	MSKCC	GRCh37	15	90634809	90634814	+	frameshift_variant	Frame_Shift_Del	DEL	AATACG	AATACG	GAGAT			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	155	536	2	ENST00000330062.3:c.178_183delinsATCTC	p.Arg60IlefsTer20	p.R60Ifs*20	ENST00000330062	NM_002168.2	60	CGTATT/ATCTC																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59820399	59820399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	152	335	0	ENST00000259008.2:c.2354C>A	p.Pro785His	p.P785H	ENST00000259008	NM_032043.2	785	cCt/cAt																																																																														
STK11	6794	MSKCC	GRCh37	19	1226492	1226492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	223	539	0	ENST00000326873.7:c.1148G>C	p.Arg383Pro	p.R383P	ENST00000326873	NM_000455.4	383	cGc/cCc																																																																														
ALK	238	MSKCC	GRCh37	2	30143467	30143467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	91	316	0	ENST00000389048.3:c.59G>T	p.Gly20Val	p.G20V	ENST00000389048	NM_004304.4	20	gGc/gTc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920059	1920059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	198	532	1	ENST00000382895.3:c.1119G>T	p.Met373Ile	p.M373I	ENST00000382895	NM_133330.2	373	atG/atT																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31508817	31508817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	63	525	1	ENST00000344624.3:c.1498G>A	p.Glu500Lys	p.E500K	ENST00000344624		500	Gaa/Aaa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876533	35876533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	239	423	0	ENST00000303115.3:c.1325G>T	p.Gly442Val	p.G442V	ENST00000303115	NM_002185.3	442	gGa/gTa																																																																														
MED12	9968	MSKCC	GRCh37	X	70349220	70349220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	108	546	0	ENST00000374080.3:c.3632C>A	p.Ser1211Tyr	p.S1211Y	ENST00000374080		1211	tCc/tAc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184117	123184117	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	55	257	0	ENST00000218089.9:c.975T>G	p.Asn325Lys	p.N325K	ENST00000218089	NM_001042749.1	325	aaT/aaG																																																																														
STAG2	10735	MSKCC	GRCh37	X	123190001	123190001	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	111	370	0	ENST00000218089.9:c.1220C>G	p.Ala407Gly	p.A407G	ENST00000218089	NM_001042749.1	407	gCa/gGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	34	405	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578399	7578403	+	protein_altering_variant	In_Frame_Del	DEL	GGGGC	GGGGC	AG			P-0044639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	86	671	2	ENST00000269305.4:c.527_531delinsCT	p.Cys176_Pro177delinsSer	p.C176_P177delinsS	ENST00000269305	NM_001126112.2	176	tGCCCC/tCT																																																																														
RB1	5925	MSKCC	GRCh37	13	48955538	48955538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913303		P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	162	334	0	ENST00000267163.4:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000267163	NM_000321.2	552	Cga/Tga																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871036	12871036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	297	447	0	ENST00000228872.4:c.263A>G	p.Tyr88Cys	p.Y88C	ENST00000228872	NM_004064.3	88	tAc/tGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29585361	29585361	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	316	444	0	ENST00000358273.4:c.4174-1G>A		p.X1392_splice	ENST00000358273	NM_001042492.2	1392																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519795		P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	321	437	1	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	575	795	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600470	10600470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	584	731	0	ENST00000171111.5:c.1385G>T	p.Gly462Val	p.G462V	ENST00000171111	NM_203500.1	462	gGg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579496	7579496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	560	827	0	ENST00000269305.4:c.191C>T	p.Pro64Leu	p.P64L	ENST00000269305	NM_001126112.2	64	cCc/cTc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47643492	47643492	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	325	568	0	ENST00000233146.2:c.1000A>G	p.Lys334Glu	p.K334E	ENST00000233146	NM_000251.2	334	Aaa/Gaa																																																																														
APC	324	MSKCC	GRCh37	5	112174980	112174980	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	265	201	0	ENST00000257430.4:c.3689A>T	p.Gln1230Leu	p.Q1230L	ENST00000257430	NM_000038.5	1230	cAg/cTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69032475	69032477	+	missense_variant	Missense_Mutation	ONP	GGC	GGC	AAA			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	195	700	3	ENST00000288368.4:c.3549_3551delinsAAA	p.Ala1184Asn	p.A1184N	ENST00000288368	NM_024870.2	1183	agGGCc/agAAAc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285740	87285740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	457	655	0	ENST00000277120.3:c.77G>T	p.Trp26Leu	p.W26L	ENST00000277120		26	tGg/tTg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249644	110249644	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764221089		P-0044660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	724	1108	0	ENST00000374672.4:c.1031C>T	p.Pro344Leu	p.P344L	ENST00000374672	NM_004235.4	344	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0044700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	299	639	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42059173	42059173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	75	382	0	ENST00000219905.7:c.8893C>T	p.Pro2965Ser	p.P2965S	ENST00000219905	NM_001164273.1	2965	Ccc/Tcc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830426	72830426	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777308945		P-0044700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	68	367	0	ENST00000268489.5:c.6155C>T	p.Pro2052Leu	p.P2052L	ENST00000268489	NM_006885.3	2052	cCg/cTg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39623702	39623702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	48	239	0	ENST00000262039.4:c.2109T>G	p.Phe703Leu	p.F703L	ENST00000262039	NM_002647.2	703	ttT/ttG																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210369	36210369	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0044700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	105	535	0	ENST00000222270.7:c.364-2A>C		p.X122_splice	ENST00000222270	NM_014727.1	122																																																																															
ATR	545	MSKCC	GRCh37	3	142178169	142178169	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	36	229	0	ENST00000350721.4:c.7249T>G	p.Leu2417Val	p.L2417V	ENST00000350721	NM_001184.3	2417	Tta/Gta																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149440428	149440428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	97	502	0	ENST00000286301.3:c.1966G>A	p.Gly656Arg	p.G656R	ENST00000286301	NM_005211.3	656	Gga/Aga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168647	32168647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	118	631	0	ENST00000375023.3:c.4276C>T	p.Pro1426Ser	p.P1426S	ENST00000375023	NM_004557.3	1426	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0044758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	485	665	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
RB1	5925	MSKCC	GRCh37	13	49039341	49039341	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0044758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	314	578	0	ENST00000267163.4:c.2330del	p.Pro777LeufsTer33	p.P777Lfs*33	ENST00000267163	NM_000321.2	776	Ccc/cc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937138	36937138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1994	303	765	0	ENST00000361632.4:c.1181G>C	p.Ser394Thr	p.S394T	ENST00000361632		394	aGc/aCc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998568	100998568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	476	691	0	ENST00000325455.5:c.1234G>T	p.Ala412Ser	p.A412S	ENST00000325455	NM_001202474.3	412	Gca/Tca																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121910	2121910	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs370553131		P-0044758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	575	917	1	ENST00000219476.3:c.2072G>T	p.Arg691Leu	p.R691L	ENST00000219476	NM_000548.3	691	cGc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992562	72992562	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1299827763		P-0044758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	263	855	0	ENST00000268489.5:c.1483T>C	p.Phe495Leu	p.F495L	ENST00000268489	NM_006885.3	495	Ttt/Ctt																																																																														
RARA	5914	MSKCC	GRCh37	17	38510584	38510584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	153	634	1	ENST00000254066.5:c.838G>A	p.Glu280Lys	p.E280K	ENST00000254066	NM_000964.3	280	Gag/Aag																																																																														
SMO	6608	MSKCC	GRCh37	7	128829039	128829040	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs570242755		P-0044773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	28	29	1	ENST00000249373.3:c.67_69dup	p.Leu23dup	p.L23dup	ENST00000249373	NM_005631.4	23	ggg/ggGCTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225060		P-0044773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	24	360	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223975	2223975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1341	229	820	0	ENST00000326181.6:c.1189G>A	p.Gly397Ser	p.G397S	ENST00000326181	NM_032271.2	397	Ggc/Agc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022289	31022289	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs951716574		P-0044773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	94	440	0	ENST00000375687.4:c.1774C>T	p.Gln592Ter	p.Q592*	ENST00000375687	NM_015338.5	592	Cag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508173	106508173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1315748037		P-0044773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	81	290	0	ENST00000359195.3:c.167C>T	p.Thr56Met	p.T56M	ENST00000359195	NM_002649.2	56	aCg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108205835	108205835	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0044773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	82	315	0	ENST00000278616.4:c.8150A>C	p.Lys2717Thr	p.K2717T	ENST00000278616	NM_000051.3	2717	aAg/aCg																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589518	69589518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755540122		P-0044773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	79	73	0	ENST00000168712.1:c.335G>A	p.Arg112His	p.R112H	ENST00000168712	NM_002007.2	112	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0044799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	492	627	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
RET	5979	MSKCC	GRCh37	10	43598009	43598009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	220	735	0	ENST00000355710.3:c.557A>G	p.His186Arg	p.H186R	ENST00000355710	NM_020975.4	186	cAc/cGc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172091	99172091	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776893699		P-0044799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	89	548	2	ENST00000074304.5:c.1657C>T	p.Arg553Trp	p.R553W	ENST00000074304	NM_001134224.1	553	Cgg/Tgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058531	69058531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	117	506	0	ENST00000288368.4:c.4175C>T	p.Pro1392Leu	p.P1392L	ENST00000288368	NM_024870.2	1392	cCt/cTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2233	496	820	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	840	582	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
PAX5	5079	MSKCC	GRCh37	9	36840607	36840607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs528158465		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	175	855	0	ENST00000358127.4:c.1126G>A	p.Ala376Thr	p.A376T	ENST00000358127	NM_001280556.1	376	Gcc/Acc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435828	56435828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs995358248		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	149	838	0	ENST00000407977.2:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000407977		437	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	821	899	0	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
NF1	4763	MSKCC	GRCh37	17	29585383	29585383	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691072		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	268	582	0	ENST00000358273.4:c.4195C>T	p.Gln1399Ter	p.Q1399*	ENST00000358273	NM_001042492.2	1399	Cag/Tag																																																																														
AXL	558	MSKCC	GRCh37	19	41763501	41763501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200271277		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	142	690	1	ENST00000301178.4:c.2300G>A	p.Arg767His	p.R767H	ENST00000301178	NM_021913.4	767	cGc/cAc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30105530	30105530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1435	136	717	0	ENST00000331968.5:c.1156G>T	p.Asp386Tyr	p.D386Y	ENST00000331968	NM_002742.2	386	Gac/Tac																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319956	62319956	+	missense_variant,splice_region_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs199796539		P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	168	945	2	ENST00000482936.1:c.1798G>A	p.Glu600Lys	p.E600K	ENST00000482936		600	Gag/Aag																																																																														
MSH3	4437	MSKCC	GRCh37	5	80057447	80057447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	71	390	0	ENST00000265081.6:c.1846C>G	p.Arg616Gly	p.R616G	ENST00000265081	NM_002439.4	616	Cgt/Ggt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258694	115258694	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	28	275	0	ENST00000369535.4:c.88G>C	p.Asp30His	p.D30H	ENST00000369535	NM_002524.4	30	Gat/Cat																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888165	112888165	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507510		P-0044885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	124	472	0	ENST00000351677.2:c.181G>A	p.Asp61Asn	p.D61N	ENST00000351677	NM_002834.3	61	Gat/Aat																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888174	112888174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	121	482	0	ENST00000351677.2:c.190G>C	p.Asp64His	p.D64H	ENST00000351677	NM_002834.3	64	Gac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	263	373	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0044960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	197	233	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0044960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	1235	518	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																														
RB1	5925	MSKCC	GRCh37	13	48881426	48881426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	125	63	0	ENST00000267163.4:c.148G>T	p.Glu50Ter	p.E50*	ENST00000267163	NM_000321.2	50	Gaa/Taa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136847	2136965	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGACTTCAAGCTTGGCACCATCAAGGTGAGTGAGGGGCCGTCAGTGAGGCTGGGCCCCAGGCAGGTGCCCACTGCTGTGTCCCGGGTTGGTGGCAGGTCCTCCTCCCTGAGCTTCGGT	AGGACTTCAAGCTTGGCACCATCAAGGTGAGTGAGGGGCCGTCAGTGAGGCTGGGCCCCAGGCAGGTGCCCACTGCTGTGTCCCGGGTTGGTGGCAGGTCCTCCTCCCTGAGCTTCGGT	-			P-0044960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	120	409	0	ENST00000219476.3:c.4964_4989+93del		p.X1655_splice	ENST00000219476	NM_000548.3	1655																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139736	55139736	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	296	270	0	ENST00000257290.5:c.1398del	p.Asn467ThrfsTer22	p.N467Tfs*22	ENST00000257290	NM_006206.4	466	gCc/gc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206646622	206646622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	205	777	0	ENST00000367120.3:c.52G>A	p.Gly18Arg	p.G18R	ENST00000367120	NM_014002.3	18	Ggg/Agg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	110	356	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28598996	28598996	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	119	383	0	ENST00000241453.7:c.2290+2T>C		p.X764_splice	ENST00000241453	NM_004119.2	764																																																																															
NF1	4763	MSKCC	GRCh37	17	29554618	29554619	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	132	280	0	ENST00000358273.4:c.2405dup	p.Gln803ProfsTer4	p.Q803Pfs*4	ENST00000358273	NM_001042492.2	801	-/G																																																																														
STK11	6794	MSKCC	GRCh37	19	1207201	1207201	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	357	588	0	ENST00000326873.7:c.289A>T	p.Lys97Ter	p.K97*	ENST00000326873	NM_000455.4	97	Aag/Tag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214631	5214631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	218	696	0	ENST00000357368.4:c.4435G>T	p.Val1479Leu	p.V1479L	ENST00000357368	NM_002850.3	1479	Gtg/Ttg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098933	178098933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	83	306	0	ENST00000397062.3:c.112G>C	p.Asp38His	p.D38H	ENST00000397062	NM_006164.4	38	Gac/Cac																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656839	45656839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	526	527	0	ENST00000407780.3:c.317A>T	p.Gln106Leu	p.Q106L	ENST00000407780	NM_001283052.1	106	cAg/cTg																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	82	298	0	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	213	280	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	244	516	1	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508361	106508361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	115	254	0	ENST00000359195.3:c.355C>A	p.Leu119Met	p.L119M	ENST00000359195	NM_002649.2	119	Ctg/Atg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3652269	3652269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752160984		P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	143	556	1	ENST00000294008.3:c.800C>T	p.Ala267Val	p.A267V	ENST00000294008	NM_032444.2	267	gCg/gTg																																																																														
PARK2	0	MSKCC	GRCh37	6	162683677	162683677	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	335	425	0	ENST00000366898.1:c.292G>T	p.Glu98Ter	p.E98*	ENST00000366898	NM_004562.2	98	Gag/Tag																																																																														
JUN	3725	MSKCC	GRCh37	1	59248123	59248124	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs748534142		P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	15	147	0	ENST00000371222.2:c.617_619dup	p.Gln206dup	p.Q206dup	ENST00000371222	NM_002228.3	206	ccg/cAGCcg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633102	3633102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	91	505	0	ENST00000294008.3:c.5149C>T	p.Gln1717Ter	p.Q1717*	ENST00000294008	NM_032444.2	1717	Cag/Tag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464499	25464499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	257	605	1	ENST00000264709.3:c.2014G>T	p.Val672Leu	p.V672L	ENST00000264709	NM_175629.2	672	Gtg/Ttg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713362	40713362	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	246	639	0	ENST00000373198.4:c.4153del	p.Gln1385SerfsTer14	p.Q1385Sfs*14	ENST00000373198	NM_133170.3	1385	Cag/ag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046716	180046716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs910059826		P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	318	721	0	ENST00000261937.6:c.2596G>A	p.Gly866Ser	p.G866S	ENST00000261937	NM_182925.4	866	Ggc/Agc																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271474	26271474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	144	393	0	ENST00000305910.3:c.139G>T	p.Val47Leu	p.V47L	ENST00000305910	NM_003534.2	47	Gtg/Ttg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987279	2987279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	202	439	1	ENST00000396946.4:c.150G>T	p.Lys50Asn	p.K50N	ENST00000396946	NM_032415.4	50	aaG/aaT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106524645	106524645	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	96	223	0	ENST00000359195.3:c.2806T>A	p.Cys936Ser	p.C936S	ENST00000359195	NM_002649.2	936	Tgt/Agt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410525	63410525	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	50	643	0	ENST00000330258.3:c.2642G>C	p.Arg881Pro	p.R881P	ENST00000330258	NM_152424.3	881	cGa/cCa																																																																														
ALK	238	MSKCC	GRCh37	2	29455266	29455266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	170	419	0	ENST00000389048.3:c.2536G>T	p.Gly846Cys	p.G846C	ENST00000389048	NM_004304.4	846	Ggc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5239032	5239036	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCC	CCTCC	TTT			P-0044985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	310	690	0	ENST00000357368.4:c.1743_1747delinsAAA	p.Glu582LysfsTer44	p.E582Kfs*44	ENST00000357368	NM_002850.3	581	gtGGAGGac/gtAAAac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909231		P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	111	317	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472466	88472466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	167	735	1	ENST00000360948.2:c.2089G>T	p.Asp697Tyr	p.D697Y	ENST00000360948	NM_001012338.2	697	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577041	7577041	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	309	997	0	ENST00000269305.4:c.897del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	299	ctG/ct																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375094	31375094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	263	949	0	ENST00000328111.2:c.491C>G	p.Ser164Cys	p.S164C	ENST00000328111	NM_006892.3	164	tCt/tGt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750581	41750581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	95	745	0	ENST00000226382.2:c.47C>T	p.Ser16Phe	p.S16F	ENST00000226382	NM_003924.3	16	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878944	151878944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	169	653	1	ENST00000262189.6:c.6001G>T	p.Ala2001Ser	p.A2001S	ENST00000262189	NM_170606.2	2001	Gct/Tct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	196	641	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	196	641	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	196	641	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211383	98211383	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148350525		P-0045005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	234	904	0	ENST00000331920.6:c.3772G>A	p.Ala1258Thr	p.A1258T	ENST00000331920	NM_000264.3	1258	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0045016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	449	680	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
MPL	4352	MSKCC	GRCh37	1	43803562	43803562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	428	757	0	ENST00000372470.3:c.43C>A	p.Leu15Met	p.L15M	ENST00000372470	NM_005373.2	15	Ctg/Atg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332807	70332807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	221	552	0	ENST00000373644.4:c.712G>T	p.Gly238Cys	p.G238C	ENST00000373644	NM_030625.2	238	Ggt/Tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	49039215	49039215	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	402	422	0	ENST00000267163.4:c.2296del	p.Thr766GlnfsTer44	p.T766Qfs*44	ENST00000267163	NM_000321.2	765	Aaa/aa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138609	2138609	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0045016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	387	675	0	ENST00000219476.3:c.5422T>A	p.Ter1808ArgextTer19	p.*1808Rext*19	ENST00000219476	NM_000548.3	1808	Tga/Aga																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656826	45656826	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	203	596	0	ENST00000407780.3:c.330G>C	p.Lys110Asn	p.K110N	ENST00000407780	NM_001283052.1	110	aaG/aaC																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31493328	31493328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	216	336	0	ENST00000344624.3:c.1828G>T	p.Ala610Ser	p.A610S	ENST00000344624		610	Gcc/Tcc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419049	419049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	13	400	0	ENST00000399788.2:c.3298G>A	p.Glu1100Lys	p.E1100K	ENST00000399788	NM_001042603.1	1100	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0046454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	237	173	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579330	7579330	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	673	635	1	ENST00000269305.4:c.357del	p.Lys120SerfsTer3	p.K120Sfs*3	ENST00000269305	NM_001126112.2	119	gcC/gc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-	rs121913425		P-0046454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	216	319	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28931588		P-0047360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	89	278	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0047360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	46	271	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																														
EED	8726	MSKCC	GRCh37	11	85956318	85956318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371991859		P-0047360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	56	193	0	ENST00000263360.6:c.47C>T	p.Pro16Leu	p.P16L	ENST00000263360	NM_003797.3	16	cCt/cTt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646429	23646429	+	stop_gained	Nonsense_Mutation	SNP	T	T	A	rs1057520653		P-0047360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	132	425	0	ENST00000261584.4:c.1438A>T	p.Lys480Ter	p.K480*	ENST00000261584	NM_024675.3	480	Aaa/Taa																																																																														
STK11	6794	MSKCC	GRCh37	19	1220590	1220590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782379		P-0047360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	188	674	1	ENST00000326873.7:c.608C>T	p.Pro203Leu	p.P203L	ENST00000326873	NM_000455.4	203	cCg/cTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786008	135786008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	166	515	1	ENST00000298552.3:c.1213G>A	p.Asp405Asn	p.D405N	ENST00000298552	NM_001162426.1	405	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	33	269	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	64	554	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372148	55372148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	101	524	0	ENST00000297316.4:c.838G>T	p.Gly280Cys	p.G280C	ENST00000297316	NM_022454.3	280	Ggt/Tgt																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39311714	39311714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	43	451	0	ENST00000373001.3:c.945G>T	p.Met315Ile	p.M315I	ENST00000373001	NM_022157.3	315	atG/atT																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948533	71948533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	63	792	0	ENST00000298229.2:c.3245G>T	p.Gly1082Val	p.G1082V	ENST00000298229	NM_001567.3	1082	gGg/gTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351890	89351890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	83	621	0	ENST00000301030.4:c.1060G>C	p.Glu354Gln	p.E354Q	ENST00000301030	NM_001256183.1	354	Gag/Cag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117680976	117680976	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	34	218	0	ENST00000368508.3:c.3644C>G	p.Ser1215Cys	p.S1215C	ENST00000368508	NM_002944.2	1215	tCt/tGt																																																																														
HGF	3082	MSKCC	GRCh37	7	81340797	81340797	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	16	149	0	ENST00000222390.5:c.1444C>A	p.His482Asn	p.H482N	ENST00000222390	NM_000601.4	482	Cat/Aat																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250522	110250522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	45	520	0	ENST00000374672.4:c.153G>T	p.Met51Ile	p.M51I	ENST00000374672	NM_004235.4	51	atG/atT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0048693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	83	367	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0048693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	77	461	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
AXL	558	MSKCC	GRCh37	19	41758265	41758265	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	42	413	0	ENST00000301178.4:c.1721G>T	p.Cys574Phe	p.C574F	ENST00000301178	NM_021913.4	574	tGc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	120	326	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	90	648	1	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543781	212543781	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866138670		P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	39	293	1	ENST00000342788.4:c.1618G>A	p.Asp540Asn	p.D540N	ENST00000342788	NM_005235.2	540	Gat/Aat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31521267	31521267	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	126	517	0	ENST00000344624.3:c.910G>T	p.Glu304Ter	p.E304*	ENST00000344624		304	Gaa/Taa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563036	21563036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	61	651	1	ENST00000382592.4:c.883G>T	p.Gly295Ter	p.G295*	ENST00000382592	NM_014572.2	295	Gga/Tga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120836	115120836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	45	467	0	ENST00000257566.3:c.170C>T	p.Pro57Leu	p.P57L	ENST00000257566	NM_016569.3	57	cCg/cTg																																																																														
PARK2	0	MSKCC	GRCh37	6	162683677	162683677	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	72	521	0	ENST00000366898.1:c.292G>T	p.Glu98Ter	p.E98*	ENST00000366898	NM_004562.2	98	Gag/Tag																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599142	28599142	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	165	746	0	ENST00000253063.3:c.588G>T	p.Gln196His	p.Q196H	ENST00000253063	NM_031459.4	196	caG/caT																																																																														
CBL	867	MSKCC	GRCh37	11	119103157	119103157	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	50	355	0	ENST00000264033.4:c.196-1G>T		p.X66_splice	ENST00000264033	NM_005188.3	66																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2218112	2218112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	90	735	0	ENST00000326181.6:c.174G>C	p.Arg58Ser	p.R58S	ENST00000326181	NM_032271.2	58	agG/agC																																																																														
NF1	4763	MSKCC	GRCh37	17	29667522	29667522	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	51	418	0	ENST00000358273.4:c.6922-1G>T		p.X2308_splice	ENST00000358273	NM_001042492.2	2308																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39576650	39576650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	35	317	0	ENST00000262039.4:c.940G>A	p.Asp314Asn	p.D314N	ENST00000262039	NM_002647.2	314	Gat/Aat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213772	66213772	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	38	326	0	ENST00000273854.3:c.2658T>G	p.Asp886Glu	p.D886E	ENST00000273854	NM_004439.5	886	gaT/gaG																																																																														
TET2	54790	MSKCC	GRCh37	4	106197002	106197002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	25	278	0	ENST00000380013.4:c.5335G>A	p.Ala1779Thr	p.A1779T	ENST00000380013	NM_001127208.2	1779	Gcc/Acc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541747	187541747	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	42	326	0	ENST00000441802.2:c.5993T>A	p.Leu1998Ter	p.L1998*	ENST00000441802	NM_005245.3	1998	tTa/tAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1294483	1294483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	80	576	0	ENST00000310581.5:c.518C>A	p.Pro173Gln	p.P173Q	ENST00000310581	NM_198253.2	173	cCg/cAg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31504732	31504732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	54	370	0	ENST00000344624.3:c.1598G>T	p.Gly533Val	p.G533V	ENST00000344624		533	gGa/gTa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519435	176519435	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	77	687	0	ENST00000292408.4:c.841A>T	p.Ile281Phe	p.I281F	ENST00000292408	NM_213647.1	281	Atc/Ttc																																																																														
NF1	4763	MSKCC	GRCh37	17	29663406	29663409	+	frameshift_variant	Frame_Shift_Del	DEL	GTGG	GTGG	TCT			P-0048700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	50	411	1	ENST00000358273.4:c.6062_6065delinsTCT	p.Gly2021ValfsTer6	p.G2021Vfs*6	ENST00000358273	NM_001042492.2	2021	gGTGGc/gTCTc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429757	78429757	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755419864		P-0048830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	25	191	0	ENST00000370768.2:c.1031G>A	p.Arg344Gln	p.R344Q	ENST00000370768	NM_003902.3	344	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0048830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	104	827	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087911	27087911	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	61	503	0	ENST00000324856.7:c.2198C>A	p.Ser733Ter	p.S733*	ENST00000324856	NM_006015.4	733	tCg/tAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575102	48575102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	27	207	0	ENST00000342988.3:c.296G>A	p.Trp99Ter	p.W99*	ENST00000342988	NM_005359.5	99	tGg/tAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420593	49420598	+	inframe_deletion	In_Frame_Del	DEL	CAGGTT	CAGGTT	-			P-0048830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	71	643	0	ENST00000301067.7:c.15151_15156del	p.Asn5051_Leu5052del	p.N5051_L5052del	ENST00000301067	NM_003482.3	5051	AACCTG/-																																																																														
EP300	2033	MSKCC	GRCh37	22	41543900	41543902	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-	rs1215537200		P-0048830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	63	357	0	ENST00000263253.7:c.2195_2197del	p.Pro732del	p.P732del	ENST00000263253	NM_001429.3	731	CCT/-																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873813	151873813	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	30	344	0	ENST00000262189.6:c.8725del	p.Cys2909ValfsTer3	p.C2909Vfs*3	ENST00000262189	NM_170606.2	2909	Tgt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	316	620	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517201		P-0049094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	119	460	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
APC	324	MSKCC	GRCh37	5	112174577	112174577	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587783029		P-0049094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	41	356	0	ENST00000257430.4:c.3286C>T	p.Gln1096Ter	p.Q1096*	ENST00000257430	NM_000038.5	1096	Cag/Tag																																																																														
SMO	6608	MSKCC	GRCh37	7	128845479	128845479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	436	577	0	ENST00000249373.3:c.776C>T	p.Ser259Leu	p.S259L	ENST00000249373	NM_005631.4	259	tCg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112176018	112176019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0049094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	46	218	0	ENST00000257430.4:c.4729_4730dup	p.Cys1578AsnfsTer73	p.C1578Nfs*73	ENST00000257430	NM_000038.5	1576	gaa/gaAGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			43	42	218	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165657	118165657	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs565811357		P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	11	305	0	ENST00000369448.3:c.167G>T	p.Arg56Leu	p.R56L	ENST00000369448	NM_017709.3	56	cGc/cTc																																																																														
FH	2271	MSKCC	GRCh37	1	241682974	241682974	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs755886213		P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			161	14	268	0	ENST00000366560.3:c.49G>C	p.Ala17Pro	p.A17P	ENST00000366560	NM_000143.3	17	Gct/Cct																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668681	52668681	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	37	387	0	ENST00000394830.3:c.1238C>G	p.Ser413Ter	p.S413*	ENST00000394830	NM_018313.4	413	tCa/tGa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799628	72799628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	24	339	0	ENST00000325599.8:c.1541C>G	p.Ala514Gly	p.A514G	ENST00000325599	NM_018130.2	514	gCc/gGc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100324	8100324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs904307886		P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	21	503	0	ENST00000346208.3:c.298G>A	p.Gly100Ser	p.G100S	ENST00000346208		100	Ggc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420529	49420529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	26	262	0	ENST00000301067.7:c.15220G>T	p.Gly5074Cys	p.G5074C	ENST00000301067	NM_003482.3	5074	Ggc/Tgc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109968	115109968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			52	12	118	0	ENST00000257566.3:c.1910G>T	p.Arg637Leu	p.R637L	ENST00000257566	NM_016569.3	637	cGg/cTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911271	32911271	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786201837		P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	11	230	0	ENST00000380152.3:c.2779A>G	p.Met927Val	p.M927V	ENST00000380152		927	Atg/Gtg																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526445	66526445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	31	196	0	ENST00000358598.2:c.1001C>T	p.Pro334Leu	p.P334L	ENST00000358598	NM_212471.2	334	cCt/cTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221215	1221215	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs137853083		P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	34	575	0	ENST00000326873.7:c.738C>G	p.Tyr246Ter	p.Y246*	ENST00000326873	NM_000455.4	246	taC/taG																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610466	10610466	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			76	23	302	0	ENST00000171111.5:c.244C>T	p.Gln82Ter	p.Q82*	ENST00000171111	NM_203500.1	82	Cag/Tag																																																																														
ERG	2078	MSKCC	GRCh37	21	39755657	39755657	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			96	29	420	0	ENST00000288319.7:c.1108C>G	p.Arg370Gly	p.R370G	ENST00000288319	NM_182918.3	370	Cgt/Ggt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11205075	11205075	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	32	450	0	ENST00000361445.4:c.4714del	p.Asp1572MetfsTer4	p.D1572Mfs*4	ENST00000361445	NM_004958.3	1572	Gat/at																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129327	152129328	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000825-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	12	382	0	ENST00000206249.3:c.281dup	p.Leu100ThrfsTer57	p.L100Tfs*57	ENST00000206249	NM_000125.3	94	ctg/cTtg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0002281-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			714	136	689	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178097304	178097304	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763097686		P-0002281-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			444	85	451	1	ENST00000397062.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000397062	NM_006164.4	137	tCg/tTg																																																																														
JUN	3725	MSKCC	GRCh37	1	59247846	59247847	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002281-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			799	188	954	0	ENST00000371222.2:c.896dup	p.Asn299LysfsTer11	p.N299Kfs*11	ENST00000371222	NM_002228.3	299	aac/aaAc																																																																														
CBFB	865	MSKCC	GRCh37	16	67063316	67063338	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCGTCGTGCCCGACCAGAGAA	GCGCGTCGTGCCCGACCAGAGAA	-			P-0002281-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			146	28	153	0	ENST00000412916.2:c.8_30del	p.Arg3GlnfsTer9	p.R3Qfs*9	ENST00000412916		2	ccGCGCGTCGTGCCCGACCAGAGAAgc/ccgc																																																																														
CDH1	999	MSKCC	GRCh37	16	68857532	68857532	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0002281-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			469	113	598	0	ENST00000261769.5:c.2164+3A>C		p.X722_splice	ENST00000261769	NM_004360.3	722																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151949766	151949766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002281-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			654	99	536	0	ENST00000262189.6:c.1334C>T	p.Ser445Phe	p.S445F	ENST00000262189	NM_170606.2	445	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	104	78	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	115	201	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780908	9780908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	51	342	0	ENST00000377346.4:c.1630G>C	p.Glu544Gln	p.E544Q	ENST00000377346	NM_005026.3	544	Gag/Cag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932943	49932943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	88	588	0	ENST00000296474.3:c.3001C>T	p.Gln1001Ter	p.Q1001*	ENST00000296474	NM_002447.2	1001	Cag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213784	66213784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	125	322	0	ENST00000273854.3:c.2646G>T	p.Met882Ile	p.M882I	ENST00000273854	NM_004439.5	882	atG/atT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213891	66213891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	122	367	0	ENST00000273854.3:c.2539C>A	p.Pro847Thr	p.P847T	ENST00000273854	NM_004439.5	847	Cca/Aca																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081639	143081639	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	110	283	0	ENST00000262992.4:c.1435G>T	p.Gly479Ter	p.G479*	ENST00000262992	NM_001101669.1	479	Gga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332772	153332772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	158	313	0	ENST00000281708.4:c.184G>C	p.Val62Leu	p.V62L	ENST00000281708	NM_033632.3	62	Gta/Cta																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670658	86670658	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	46	157	0	ENST00000274376.6:c.1936G>A	p.Asp646Asn	p.D646N	ENST00000274376	NM_002890.2	646	Gat/Aat																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271350	26271350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs532386575		P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	526	839	1	ENST00000305910.3:c.263C>T	p.Ser88Phe	p.S88F	ENST00000305910	NM_003534.2	88	tCc/tTc																																																																														
PARK2	0	MSKCC	GRCh37	6	162683796	162683796	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	36	206	0	ENST00000366898.1:c.173A>T	p.Asn58Ile	p.N58I	ENST00000366898	NM_004562.2	58	aAt/aTt																																																																														
SMO	6608	MSKCC	GRCh37	7	128848638	128848638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	521	420	0	ENST00000249373.3:c.1303G>T	p.Gly435Trp	p.G435W	ENST00000249373	NM_005631.4	435	Ggg/Tgg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5029857	5029857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	152	299	1	ENST00000381652.3:c.301G>A	p.Val101Ile	p.V101I	ENST00000381652	NM_004972.3	101	Gtc/Atc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8733783	8733783	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	115	343	0	ENST00000356435.5:c.61G>C	p.Glu21Gln	p.E21Q	ENST00000356435		21	Gag/Cag																																																																														
ABL1	25	MSKCC	GRCh37	9	133760285	133760285	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	114	283	0	ENST00000318560.5:c.2608G>T	p.Ala870Ser	p.A870S	ENST00000318560	NM_005157.4	870	Gcc/Tcc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760703	133760703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	104	374	0	ENST00000318560.5:c.3026G>T	p.Arg1009Leu	p.R1009L	ENST00000318560	NM_005157.4	1009	cGa/cTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246071	46246071	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	245	253	0	ENST00000334344.6:c.4165G>T	p.Glu1389Ter	p.E1389*	ENST00000334344	NM_152641.2	1389	Gag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912735	32912735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507327		P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	115	641	0	ENST00000380152.3:c.4243G>A	p.Glu1415Lys	p.E1415K	ENST00000380152		1415	Gag/Aag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913155	32913155	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	105	696	1	ENST00000380152.3:c.4663G>T	p.Glu1555Ter	p.E1555*	ENST00000380152		1555	Gaa/Taa																																																																														
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	64	286	0	ENST00000558401.1:c.1A>T	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Ttg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348241	348241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	61	165	0	ENST00000262320.3:c.1265G>T	p.Gly422Val	p.G422V	ENST00000262320	NM_003502.3	422	gGt/gTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827904	72827904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	88	697	0	ENST00000268489.5:c.8677G>C	p.Gly2893Arg	p.G2893R	ENST00000268489	NM_006885.3	2893	Ggt/Cgt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024467	16024467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	142	335	0	ENST00000268712.3:c.1751G>T	p.Arg584Leu	p.R584L	ENST00000268712	NM_006311.3	584	cGg/cTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948834	17948834	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	410	454	0	ENST00000458235.1:c.1608C>A	p.Tyr536Ter	p.Y536*	ENST00000458235	NM_000215.3	536	taC/taA																																																																														
CIC	23152	MSKCC	GRCh37	19	42795860	42795860	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	59	437	0	ENST00000575354.2:c.2849C>G	p.Ser950Ter	p.S950*	ENST00000575354	NM_015125.3	950	tCa/tGa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710649	40710649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	38	204	0	ENST00000373198.4:c.4202G>T	p.Gly1401Val	p.G1401V	ENST00000373198	NM_133170.3	1401	gGa/gTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41513268	41513268	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	212	343	0	ENST00000263253.7:c.172G>C	p.Gly58Arg	p.G58R	ENST00000263253	NM_001429.3	58	Ggt/Cgt																																																																														
ATR	545	MSKCC	GRCh37	3	142268452	142268453	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	57	187	0	ENST00000350721.4:c.3039_3040del	p.Ile1014SerfsTer12	p.I1014Sfs*12	ENST00000350721	NM_001184.3	1013	ctCAtt/cttt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103665	47103666	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs36092203		P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	65	258	0	ENST00000409792.3:c.6280dup	p.Arg2094LysfsTer4	p.R2094Kfs*4	ENST00000409792	NM_014159.6	2094	agg/aAgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217039	2217039	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	272	355	0	ENST00000398665.3:c.2497del	p.Leu833CysfsTer18	p.L833Cfs*18	ENST00000398665	NM_032482.2	832	Ccc/cc																																																																														
RB1	5925	MSKCC	GRCh37	13	49030373	49030374	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	T			P-0003553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	180	234	2	ENST00000267163.4:c.1848_1849delinsT	p.Lys616AsnfsTer7	p.K616Nfs*7	ENST00000267163	NM_000321.2	616	aaAGgt/aaTgt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682533	37682533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	260	326	0	ENST00000447079.4:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000447079	NM_015083.1	1242	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	60	413	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
RB1	5925	MSKCC	GRCh37	13	49039164	49039164	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913297		P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	38	265	1	ENST00000267163.4:c.2242G>T	p.Glu748Ter	p.E748*	ENST00000267163	NM_000321.2	748	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578245	7578245	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780072		P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	8	446	2	ENST00000269305.4:c.604C>T	p.Arg202Cys	p.R202C	ENST00000269305	NM_001126112.2	202	Cgt/Tgt																																																																														
RFWD2	0	MSKCC	GRCh37	1	175996772	175996772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	25	395	0	ENST00000367669.3:c.1665G>C	p.Lys555Asn	p.K555N	ENST00000367669	NM_022457.5	555	aaG/aaC																																																																														
INHA	3623	MSKCC	GRCh37	2	220439785	220439785	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1037869771		P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	53	476	0	ENST00000243786.2:c.638C>T	p.Pro213Leu	p.P213L	ENST00000243786	NM_002191.3	213	cCc/cTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55981455	55981455	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	36	437	0	ENST00000263923.4:c.482T>A	p.Leu161His	p.L161H	ENST00000263923	NM_002253.2	161	cTt/cAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532825	187532825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	31	462	0	ENST00000441802.2:c.9568G>T	p.Glu3190Ter	p.E3190*	ENST00000441802	NM_005245.3	3190	Gaa/Taa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519477	176519477	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	35	420	0	ENST00000292408.4:c.883G>T	p.Gly295Ter	p.G295*	ENST00000292408	NM_213647.1	295	Gga/Tga																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056366	26056366	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	80	266	0	ENST00000343677.2:c.291A>T	p.Lys97Asn	p.K97N	ENST00000343677	NM_005319.3	97	aaA/aaT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2969703	2969703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	27	328	0	ENST00000396946.4:c.1576G>T	p.Gly526Trp	p.G526W	ENST00000396946	NM_032415.4	526	Ggg/Tgg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729784	41729784	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	65	453	0	ENST00000242208.4:c.745G>T	p.Glu249Ter	p.E249*	ENST00000242208	NM_002192.2	249	Gag/Tag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741773	145741773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756213173		P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	32	366	0	ENST00000428558.2:c.730G>A	p.Glu244Lys	p.E244K	ENST00000428558	NM_004260.3	244	Gaa/Aaa																																																																														
RET	5979	MSKCC	GRCh37	10	43612158	43612158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	14	282	0	ENST00000355710.3:c.2263G>C	p.Val755Leu	p.V755L	ENST00000355710	NM_020975.4	755	Gtg/Ctg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864358	57864358	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	27	545	0	ENST00000228682.2:c.1835T>C	p.Ile612Thr	p.I612T	ENST00000228682	NM_005269.2	612	aTa/aCa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109670	115109670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	18	360	0	ENST00000257566.3:c.2208C>A	p.Asp736Glu	p.D736E	ENST00000257566	NM_016569.3	736	gaC/gaA																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435625	110435625	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	33	58	0	ENST00000375856.3:c.2776G>T	p.Glu926Ter	p.E926*	ENST00000375856	NM_003749.2	926	Gag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877462	40877462	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	17	245	0	ENST00000373198.4:c.2234G>T	p.Gly745Val	p.G745V	ENST00000373198	NM_133170.3	745	gGt/gTt																																																																														
AR	367	MSKCC	GRCh37	X	66766207	66766207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	16	117	0	ENST00000374690.3:c.1219C>T	p.Arg407Cys	p.R407C	ENST00000374690	NM_000044.3	407	Cgc/Tgc																																																																														
ATR	545	MSKCC	GRCh37	3	142272831	142272831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	27	324	0	ENST00000350721.4:c.2368del	p.Cys790ValfsTer13	p.C790Vfs*13	ENST00000350721	NM_001184.3	790	Tgt/gt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336074	73336074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	70	370	0	ENST00000377767.4:c.2329T>C	p.Ser777Pro	p.S777P	ENST00000377767	NM_014953.3	777	Tca/Cca																																																																														
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0005786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	97	499	2	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	23	214	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0006332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1214	26	383	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008836-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			157	117	422	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0009993-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			396	262	426	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0009993-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			665	131	488	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112162803	112162803	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0009993-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			479	110	345	0	ENST00000257430.4:c.1409-2A>G		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023217	27023227	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTAGGCCC	GCCCTAGGCCC	-			P-0010183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	93	229	0	ENST00000324856.7:c.328_338del	p.Arg110GlufsTer3	p.R110Efs*3	ENST00000324856	NM_006015.4	108	gGCCCTAGGCCC/g																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243905	46243905	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	497	491	0	ENST00000334344.6:c.1999A>C	p.Met667Leu	p.M667L	ENST00000334344	NM_152641.2	667	Atg/Ctg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341502	89341502	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1466808569		P-0010183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	313	495	0	ENST00000301030.4:c.7568G>A	p.Arg2523Gln	p.R2523Q	ENST00000301030	NM_001256183.1	2523	cGg/cAg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593600	55593650	+	inframe_deletion	In_Frame_Del	DEL	CAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGAC	CAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGAC	-			P-0010183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	403	543	0	ENST00000288135.5:c.1667_1717del	p.Gln556_Asp572del	p.Q556_D572del	ENST00000288135	NM_000222.2	556	CAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGAC/-																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			355	76	607	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			203	8	398	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0010593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			415	56	863	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
CBFB	865	MSKCC	GRCh37	16	67063702	67063702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			272	56	290	0	ENST00000412916.2:c.151G>A	p.Gly51Ser	p.G51S	ENST00000412916		51	Ggc/Agc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348106	89348106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			269	29	1004	0	ENST00000301030.4:c.4844C>T	p.Ser1615Phe	p.S1615F	ENST00000301030	NM_001256183.1	1615	tCc/tTc																																																																														
CDH1	999	MSKCC	GRCh37	16	68853213	68853213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			323	42	568	0	ENST00000261769.5:c.1596G>A	p.Trp532Ter	p.W532*	ENST00000261769	NM_004360.3	532	tgG/tgA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93953163	93953163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			146	21	453	0	ENST00000369303.4:c.2978G>A	p.Gly993Glu	p.G993E	ENST00000369303	NM_004440.3	993	gGa/gAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239994	53239994	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			306	40	816	0	ENST00000375401.3:c.1447G>T	p.Glu483Ter	p.E483*	ENST00000375401	NM_004187.3	483	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577075	7577076	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTCTTCC			P-0013636-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	354	574	0	ENST00000269305.4:c.855_862dup	p.Asn288ArgfsTer60	p.N288Rfs*60	ENST00000269305	NM_001126112.2	288	aat/aGGAAGAGAat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434074	49434074	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013636-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	107	427	1	ENST00000301067.7:c.7479del	p.Phe2494SerfsTer49	p.F2494Sfs*49	ENST00000301067	NM_003482.3	2493	ggG/gg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50784100	50784100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013636-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	138	464	0	ENST00000398568.2:c.491G>C	p.Gly164Ala	p.G164A	ENST00000398568	NM_001042412.1	164	gGa/gCa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256205	16256205	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	105	604	0	ENST00000375759.3:c.3475del	p.Ile1159LeufsTer28	p.I1159Lfs*28	ENST00000375759	NM_015001.2	1157	gAa/ga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242484	55242507	+	inframe_deletion	In_Frame_Del	DEL	TCTCCGAAAGCCAACAAGGAAATC	TCTCCGAAAGCCAACAAGGAAATC	-	rs121913463		P-0014117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	82	455	0	ENST00000275493.2:c.2254_2277del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	752	TCTCCGAAAGCCAACAAGGAAATC/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0014129-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			154	271	702	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563077	21563077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014129-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			125	314	851	0	ENST00000382592.4:c.842C>T	p.Pro281Leu	p.P281L	ENST00000382592	NM_014572.2	281	cCg/cTg																																																																														
MST1	4485	MSKCC	GRCh37	3	49723122	49723122	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014129-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			336	222	641	0	ENST00000449682.2:c.1294T>G	p.Phe432Val	p.F432V	ENST00000449682	NM_020998.3	432	Ttc/Gtc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591116	67591151	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TTATCCAGCTGAGAAAGACGAGAGACCAATACTTGA	TTATCCAGCTGAGAAAGACGAGAGACCAATACTTGA	-			P-0014129-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			70	96	293	0	ENST00000274335.5:c.1710_1745del	p.Ile571_Met582del	p.I571_M582del	ENST00000274335		570	cTTATCCAGCTGAGAAAGACGAGAGACCAATACTTGAtg/ctg																																																																														
PGR	5241	MSKCC	GRCh37	11	100962548	100962548	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014129-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			524	104	681	0	ENST00000325455.5:c.1849A>T	p.Lys617Ter	p.K617*	ENST00000325455	NM_001202474.3	617	Aaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307271	118307271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014129-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			84	10	92	0	ENST00000534358.1:c.44C>A	p.Thr15Asn	p.T15N	ENST00000534358	NM_005933.3	15	aCc/aAc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119634997	119634997	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014129-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			206	35	198	0	ENST00000316626.5:c.502A>C	p.Ser168Arg	p.S168R	ENST00000316626		168	Agt/Cgt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523740	176523742	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GCT	GCT	-			P-0014129-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			132	230	588	0	ENST00000292408.4:c.2152_2153+1del		p.ELdel	ENST00000292408	NM_213647.1	717	gaGCTg/gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	130	858	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	751	696	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	65	1048	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28929495		P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	702	578	1	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431322	49431322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	33	307	0	ENST00000301067.7:c.9817G>A	p.Ala3273Thr	p.A3273T	ENST00000301067	NM_003482.3	3273	Gcc/Acc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136841	2136841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	251	703	0	ENST00000219476.3:c.4958C>A	p.Ser1653Tyr	p.S1653Y	ENST00000219476	NM_000548.3	1653	tCc/tAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945112	44945112	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	11	313	1	ENST00000377967.4:c.3436C>T	p.His1146Tyr	p.H1146Y	ENST00000377967	NM_021140.2	1146	Cat/Tat																																																																														
MED12	9968	MSKCC	GRCh37	X	70354291	70354291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	90	923	0	ENST00000374080.3:c.4702G>T	p.Gly1568Cys	p.G1568C	ENST00000374080		1568	Ggc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0015825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	276	519	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601342	28601342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	147	475	0	ENST00000241453.7:c.2090G>A	p.Gly697Asp	p.G697D	ENST00000241453	NM_004119.2	697	gGt/gAt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602739	10602739	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	1030	672	0	ENST00000171111.5:c.839del	p.Phe280SerfsTer37	p.F280Sfs*37	ENST00000171111	NM_203500.1	280	tTc/tc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213947	36213947	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1244332454		P-0015825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	584	797	2	ENST00000222270.7:c.2773G>T	p.Gly925Ter	p.G925*	ENST00000222270	NM_014727.1	925	Gga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76889122	76889122	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	404	291	0	ENST00000373344.5:c.4888A>G	p.Thr1630Ala	p.T1630A	ENST00000373344	NM_000489.3	1630	Act/Gct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16245963	16245963	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			382	164	360	0	ENST00000375759.3:c.1586C>G	p.Ser529Ter	p.S529*	ENST00000375759	NM_015001.2	529	tCa/tGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059264	27059264	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			436	144	393	0	ENST00000324856.7:c.1901C>G	p.Ser634Ter	p.S634*	ENST00000324856	NM_006015.4	634	tCa/tGa																																																																														
RET	5979	MSKCC	GRCh37	10	43608306	43608306	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			892	271	751	1	ENST00000355710.3:c.1654A>T	p.Thr552Ser	p.T552S	ENST00000355710	NM_020975.4	552	Acc/Tcc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77048425	77048425	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			438	344	495	1	ENST00000356341.3:c.1160A>T	p.His387Leu	p.H387L	ENST00000356341	NM_002576.4	387	cAc/cTc																																																																														
ATM	472	MSKCC	GRCh37	11	108128305	108128305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			312	263	357	2	ENST00000278616.4:c.2348G>T	p.Cys783Phe	p.C783F	ENST00000278616	NM_000051.3	783	tGt/tTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343622	118343622	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			373	188	386	0	ENST00000534358.1:c.1748C>G	p.Pro583Arg	p.P583R	ENST00000534358	NM_005933.3	583	cCt/cGt																																																																														
MDM2	4193	MSKCC	GRCh37	12	69222581	69222581	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs576062594		P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			437	128	341	0	ENST00000462284.1:c.554G>A	p.Arg185Gln	p.R185Q	ENST00000462284	NM_002392.5	185	cGa/cAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114164	115114165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			302	403	547	0	ENST00000257566.3:c.1052dup	p.Ala352GlyfsTer23	p.A352Gfs*23	ENST00000257566	NM_016569.3	351	cag/caAg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118888	115118888	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			204	243	337	1	ENST00000257566.3:c.453A>T	p.Leu151Phe	p.L151F	ENST00000257566	NM_016569.3	151	ttA/ttT																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029110	14029110	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs747564755		P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			281	79	180	0	ENST00000311895.7:c.1321G>C	p.Glu441Gln	p.E441Q	ENST00000311895	NM_005236.2	441	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579460	7579461	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			301	374	581	0	ENST00000269305.4:c.226dup	p.Ala76GlyfsTer73	p.A76Gfs*73	ENST00000269305	NM_001126112.2	76	gca/gGca																																																																														
NF1	4763	MSKCC	GRCh37	17	29548939	29548939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			456	63	302	0	ENST00000358273.4:c.1713G>T	p.Trp571Cys	p.W571C	ENST00000358273	NM_001042492.2	571	tgG/tgT																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33446558	33446558	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			608	310	486	0	ENST00000335858.7:c.75C>G	p.Ile25Met	p.I25M	ENST00000335858	NM_133629.2	25	atC/atG																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59853919	59853919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			357	204	265	0	ENST00000259008.2:c.1940G>T	p.Trp647Leu	p.W647L	ENST00000259008	NM_032043.2	647	tGg/tTg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39618809	39618809	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			103	99	153	0	ENST00000262039.4:c.2033A>T	p.Lys678Ile	p.K678I	ENST00000262039	NM_002647.2	678	aAa/aTa																																																																														
INSR	3643	MSKCC	GRCh37	19	7117152	7117152	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			265	442	581	0	ENST00000302850.5:c.4064A>T	p.Tyr1355Phe	p.Y1355F	ENST00000302850	NM_000208.2	1355	tAc/tTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291782	15291782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs940948912		P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			281	663	645	0	ENST00000263388.2:c.2984C>T	p.Pro995Leu	p.P995L	ENST00000263388	NM_000435.2	995	cCg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223707	36223707	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1468457510		P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	251	722	2	ENST00000222270.7:c.6257C>T	p.Ser2086Leu	p.S2086L	ENST00000222270	NM_014727.1	2086	tCg/tTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45873491	45873491	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			478	253	340	0	ENST00000391945.4:c.6-1G>T		p.X2_splice	ENST00000391945	NM_000400.3	2																																																																															
POLD1	5424	MSKCC	GRCh37	19	50902125	50902125	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs778275831		P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			427	256	365	0	ENST00000440232.2:c.17G>C	p.Arg6Pro	p.R6P	ENST00000440232	NM_002691.3	6	cGg/cCg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61708370	61708370	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			338	80	247	0	ENST00000401558.2:c.3019G>C	p.Asp1007His	p.D1007H	ENST00000401558	NM_003400.3	1007	Gat/Cat																																																																														
NF2	4771	MSKCC	GRCh37	22	30090752	30090752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			515	215	521	0	ENST00000338641.4:c.1749G>C	p.Gln583His	p.Q583H	ENST00000338641	NM_000268.3	583	caG/caC																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			149	59	169	0	ENST00000318789.4:c.1531-1G>C		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448551	89448551	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			207	284	422	0	ENST00000336596.2:c.1515C>A	p.Tyr505Ter	p.Y505*	ENST00000336596	NM_005233.5	505	taC/taA																																																																														
ATR	545	MSKCC	GRCh37	3	142241639	142241639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			407	162	411	0	ENST00000350721.4:c.4197G>T	p.Glu1399Asp	p.E1399D	ENST00000350721	NM_001184.3	1399	gaG/gaT																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186505015	186505015	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			257	120	317	0	ENST00000323963.5:c.871G>C	p.Glu291Gln	p.E291Q	ENST00000323963		291	Gag/Cag																																																																														
KIT	3815	MSKCC	GRCh37	4	55564654	55564654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			241	316	423	2	ENST00000288135.5:c.542G>T	p.Arg181Leu	p.R181L	ENST00000288135	NM_000222.2	181	cGg/cTg																																																																														
FAM175A	0	MSKCC	GRCh37	4	84391396	84391396	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			529	242	599	0	ENST00000321945.7:c.436A>T	p.Thr146Ser	p.T146S	ENST00000321945	NM_139076.2	146	Act/Tct																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143067001	143067001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			308	86	321	1	ENST00000262992.4:c.1712A>T	p.His571Leu	p.H571L	ENST00000262992	NM_001101669.1	571	cAc/cTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247384	153247384	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			159	83	131	0	ENST00000281708.4:c.1419-1G>C		p.X473_splice	ENST00000281708	NM_033632.3	473																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120423	94120423	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			240	104	274	0	ENST00000369303.4:c.628G>C	p.Glu210Gln	p.E210Q	ENST00000369303	NM_004440.3	210	Gag/Cag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710566	117710566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			100	178	166	0	ENST00000368508.3:c.1706G>T	p.Gly569Val	p.G569V	ENST00000368508	NM_002944.2	569	gGc/gTc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772105404		P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			602	116	379	0	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																																																														
MET	4233	MSKCC	GRCh37	7	116397789	116397789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			718	148	522	0	ENST00000397752.3:c.2063G>C	p.Arg688Thr	p.R688T	ENST00000397752	NM_000245.2	688	aGa/aCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860359	151860359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			647	190	393	0	ENST00000262189.6:c.10303G>T	p.Gly3435Cys	p.G3435C	ENST00000262189	NM_170606.2	3435	Ggt/Tgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874275	151874275	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			360	344	413	0	ENST00000262189.6:c.8263G>C	p.Asp2755His	p.D2755H	ENST00000262189	NM_170606.2	2755	Gat/Cat																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38135901	38135901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			357	117	390	0	ENST00000317025.8:c.3790G>C	p.Asp1264His	p.D1264H	ENST00000317025	NM_023034.1	1264	Gat/Cat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69136857	69136857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			424	251	245	0	ENST00000288368.4:c.4771C>T	p.Pro1591Ser	p.P1591S	ENST00000288368	NM_024870.2	1591	Cca/Tca																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402515	139402515	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs758304923		P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			537	239	668	0	ENST00000277541.6:c.3402G>T	p.Gln1134His	p.Q1134H	ENST00000277541	NM_017617.3	1134	caG/caT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040650	47040650	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			123	202	274	0	ENST00000329236.7:c.1051G>T	p.Glu351Ter	p.E351*	ENST00000329236	NM_001204466.1	351	Gag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76764050	76764050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			422	245	348	0	ENST00000373344.5:c.7258C>G	p.Gln2420Glu	p.Q2420E	ENST00000373344	NM_000489.3	2420	Cag/Gag																																																																														
ATRX	546	MSKCC	GRCh37	X	76937038	76937038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017158-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			290	187	263	0	ENST00000373344.5:c.3710C>T	p.Ser1237Leu	p.S1237L	ENST00000373344	NM_000489.3	1237	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018546-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1365	81	666	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	364607	364607	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018546-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	64	694	0	ENST00000262320.3:c.955A>C	p.Asn319His	p.N319H	ENST00000262320	NM_003502.3	319	Aac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0020051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	59	405	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138384011	138384011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759151757		P-0020051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	107	725	2	ENST00000289153.2:c.2539C>T	p.Arg847Cys	p.R847C	ENST00000289153	NM_006219.2	847	Cgc/Tgc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206777	36206777	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	59	791	0	ENST00000300305.3:c.735del	p.Thr246ArgfsTer8	p.T246Rfs*8	ENST00000300305		245	ccC/cc																																																																														
CDH1	999	MSKCC	GRCh37	16	68771340	68771341	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0020051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	41	372	0	ENST00000261769.5:c.25_26del	p.Ser9GlyfsTer24	p.S9Gfs*24	ENST00000261769	NM_004360.3	8	CTc/c																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0020343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	49	586	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981775	201981776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	212	982	0	ENST00000359651.3:c.487dup	p.Ser163LysfsTer33	p.S163Kfs*33	ENST00000359651		162	-/A																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948712	71948712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374001069		P-0020343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	106	856	0	ENST00000298229.2:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000298229	NM_001567.3	1142	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579359	7579360	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTC			P-0020343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	79	850	0	ENST00000269305.4:c.327_328insGAAA	p.Arg110GlufsTer40	p.R110Efs*40	ENST00000269305	NM_001126112.2	109	-/GAAA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0020971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	249	810	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112128170	112128170	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	210	719	0	ENST00000257430.4:c.673G>T	p.Glu225Ter	p.E225*	ENST00000257430	NM_000038.5	225	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927984	178927984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	190	472	0	ENST00000263967.3:c.1262C>G	p.Pro421Arg	p.P421R	ENST00000263967	NM_006218.2	421	cCa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0021007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	66	721	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0021007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	35	548	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	43	640	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612352	1612352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748738693		P-0021722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	155	929	1	ENST00000344749.5:c.1667G>A	p.Arg556Gln	p.R556Q	ENST00000344749	NM_001136139.2	556	cGg/cAg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	43	672	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	61	251	3	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633565	69633565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	29	386	1	ENST00000334134.2:c.137G>A	p.Arg46His	p.R46H	ENST00000334134	NM_005247.2	46	cGc/cAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562774	95562774	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	42	479	0	ENST00000343455.3:c.4483del	p.Ser1495HisfsTer65	p.S1495Hfs*65	ENST00000343455	NM_177438.2	1495	Tca/ca																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933190	49933190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	29	714	0	ENST00000296474.3:c.2920A>C	p.Thr974Pro	p.T974P	ENST00000296474	NM_002447.2	974	Act/Cct																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851736	134851736	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	45	624	0	ENST00000398015.3:c.1142C>G	p.Pro381Arg	p.P381R	ENST00000398015	NM_004441.4	381	cCc/cGc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169977788	169977788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	33	572	0	ENST00000295797.4:c.255G>C	p.Glu85Asp	p.E85D	ENST00000295797	NM_002740.5	85	gaG/gaC																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0021837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	160	476	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70342150	70342150	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	337	792	0	ENST00000374080.3:c.1202C>G	p.Pro401Arg	p.P401R	ENST00000374080		401	cCg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242477	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAA	ATTAAGAGAA	C			P-0021837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	234	732	0	ENST00000275493.2:c.2238_2247delinsC	p.Glu746_Glu749delinsAsp	p.E746_E749delinsD	ENST00000275493	NM_005228.3	746	gaATTAAGAGAA/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0021840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	421	915	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929087	32929087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	295	784	0	ENST00000380152.3:c.7097del	p.Leu2366ArgfsTer10	p.L2366Rfs*10	ENST00000380152		2366	cTg/cg																																																																														
MST1	4485	MSKCC	GRCh37	3	49725291	49725291	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs745364054		P-0021840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	246	484	0	ENST00000449682.2:c.134del	p.Gly45AlafsTer33	p.G45Afs*33	ENST00000449682	NM_020998.3	45	gGc/gc																																																																														
ATRX	546	MSKCC	GRCh37	X	76918920	76918921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	391	1105	1	ENST00000373344.5:c.4070dup	p.Thr1358AspfsTer4	p.T1358Dfs*4	ENST00000373344	NM_000489.3	1357	aag/aaAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	132	753	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0022811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	192	931	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482843	67482843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	154	730	0	ENST00000327367.4:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000327367	NM_005902.3	416	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416428	49416428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	145	762	0	ENST00000301067.7:c.16283G>C	p.Gly5428Ala	p.G5428A	ENST00000301067	NM_003482.3	5428	gGc/gCc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575047	48575056	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTCTAGG	TTTTTCTAGG	-			P-0022811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	44	441	0	ENST00000342988.3:c.250-8_251del		p.X84_splice	ENST00000342988	NM_005359.5	84																																																																															
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	477	1208	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163317687	163317687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	87	456	0	ENST00000271452.3:c.1083G>C	p.Lys361Asn	p.K361N	ENST00000271452	NM_145697.2	361	aaG/aaC																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0022878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	37	536	0	ENST00000543371.1:c.1001+1G>C		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																															
VHL	7428	MSKCC	GRCh37	3	10191524	10191524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	121	702	0	ENST00000256474.2:c.517G>C	p.Glu173Gln	p.E173Q	ENST00000256474	NM_000551.3	173	Gag/Cag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0023439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	232	502	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0023439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	411	905	2	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662487	227662487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	146	450	0	ENST00000305123.5:c.968C>T	p.Ser323Phe	p.S323F	ENST00000305123	NM_005544.2	323	tCc/tTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286263	66286263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	90	429	0	ENST00000273854.3:c.1423G>T	p.Val475Leu	p.V475L	ENST00000273854	NM_004439.5	475	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	65	443	1	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552618	18552618	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	53	289	0	ENST00000266497.5:c.2029T>G	p.Leu677Val	p.L677V	ENST00000266497		677	Tta/Gta																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554393	63554393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	36	407	1	ENST00000307078.5:c.346G>A	p.Gly116Arg	p.G116R	ENST00000307078	NM_004655.3	116	Gga/Aga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541526	187541526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	28	330	0	ENST00000441802.2:c.6214G>A	p.Glu2072Lys	p.E2072K	ENST00000441802	NM_005245.3	2072	Gaa/Aaa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199966	138199966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	21	255	0	ENST00000237289.4:c.1384C>A	p.Pro462Thr	p.P462T	ENST00000237289	NM_001270507.1	462	Ccg/Acg																																																																														
HGF	3082	MSKCC	GRCh37	7	81340795	81340795	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0023788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	61	216	0	ENST00000222390.5:c.1444+2T>C		p.X482_splice	ENST00000222390	NM_000601.4	482																																																																															
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0023837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	151	387	0	ENST00000337652.1:c.249_252del	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845940	156845940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	173	453	0	ENST00000524377.1:c.1570G>T	p.Val524Phe	p.V524F	ENST00000524377	NM_002529.3	524	Gtc/Ttc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286806	33286806	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1443274655		P-0023837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	101	337	1	ENST00000374542.5:c.2131del	p.His711IlefsTer55	p.H711Ifs*55	ENST00000374542	NM_001141970.1	711	Cat/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0023920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	219	651	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0023920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	156	524	0	ENST00000558401.1:c.3G>T	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atT																																																																														
CDC73	79577	MSKCC	GRCh37	1	193172974	193172974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	89	364	0	ENST00000367435.3:c.1022C>G	p.Pro341Arg	p.P341R	ENST00000367435	NM_024529.4	341	cCa/cGa																																																																														
CD276	80381	MSKCC	GRCh37	15	74000685	74000685	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	30	697	0	ENST00000318443.5:c.1375C>G	p.Pro459Ala	p.P459A	ENST00000318443	NM_001024736.1	459	Cct/Gct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212485	36212485	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	49	928	0	ENST00000222270.7:c.2236A>G	p.Thr746Ala	p.T746A	ENST00000222270	NM_014727.1	746	Acc/Gcc																																																																														
HGF	3082	MSKCC	GRCh37	7	81386617	81386617	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0023920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	75	340	0	ENST00000222390.5:c.370T>A	p.Tyr124Asn	p.Y124N	ENST00000222390	NM_000601.4	124	Tac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024900-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			668	125	490	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575194	48575194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024900-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	56	287	0	ENST00000342988.3:c.388C>T	p.Pro130Ser	p.P130S	ENST00000342988	NM_005359.5	130	Cca/Tca																																																																														
RAD52	5893	MSKCC	GRCh37	12	1040463	1040463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024900-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			823	123	517	1	ENST00000358495.3:c.109C>A	p.Gln37Lys	p.Q37K	ENST00000358495	NM_134424.2	37	Cag/Aag																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66525014	66525014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024900-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	125	225	0	ENST00000358598.2:c.773C>T	p.Ser258Phe	p.S258F	ENST00000358598	NM_212471.2	258	tCt/tTt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61722610	61722610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024900-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	51	244	0	ENST00000401558.2:c.1027C>G	p.Leu343Val	p.L343V	ENST00000401558	NM_003400.3	343	Ctc/Gtc																																																																														
MET	4233	MSKCC	GRCh37	7	116412039	116412046	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAAGGTA	AGAAGGTA	TG			P-0024900-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			755	595	560	2	ENST00000397752.3:c.3024_3028+3delinsTG		p.X1008_splice	ENST00000397752	NM_000245.2	1008																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11151982	11151982	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024900-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	43	321	0	ENST00000344626.4:c.4171-1G>T		p.X1391_splice	ENST00000344626	NM_003072.3	1391																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	766	303	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs863224451		P-0026308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	47	410	0	ENST00000269305.4:c.824G>C	p.Cys275Ser	p.C275S	ENST00000269305	NM_001126112.2	275	tGt/tCt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044879	47044879	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	93	308	0	ENST00000329236.7:c.1971del	p.Ser658ValfsTer66	p.S658Vfs*66	ENST00000329236	NM_001204466.1	657	gaG/ga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243556	46243556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	211	228	1	ENST00000334344.6:c.1909G>A	p.Ala637Thr	p.A637T	ENST00000334344	NM_152641.2	637	Gca/Aca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440094	49440094	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1218	296	653	0	ENST00000301067.7:c.4532A>G	p.His1511Arg	p.H1511R	ENST00000301067	NM_003482.3	1511	cAt/cGt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987179	36987179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	805	637	0	ENST00000354822.5:c.510G>T	p.Met170Ile	p.M170I	ENST00000354822	NM_001079668.2	170	atG/atT																																																																														
BLM	641	MSKCC	GRCh37	15	91304000	91304000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	792	571	0	ENST00000355112.3:c.1397G>T	p.Gly466Val	p.G466V	ENST00000355112	NM_000057.2	466	gGg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912658		P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	589	565	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11113822	11113822	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	623	614	0	ENST00000344626.4:c.1930G>T	p.Glu644Ter	p.E644*	ENST00000344626	NM_003072.3	644	Gag/Tag																																																																														
BARD1	580	MSKCC	GRCh37	2	215645990	215645990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	355	409	0	ENST00000260947.4:c.608G>C	p.Gly203Ala	p.G203A	ENST00000260947	NM_000465.2	203	gGa/gCa																																																																														
KIT	3815	MSKCC	GRCh37	4	55599358	55599358	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	355	471	0	ENST00000288135.5:c.2484C>A	p.Asn828Lys	p.N828K	ENST00000288135	NM_000222.2	828	aaC/aaA																																																																														
KDR	3791	MSKCC	GRCh37	4	55973991	55973991	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs766459956		P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	464	560	0	ENST00000263923.4:c.1325C>A	p.Thr442Lys	p.T442K	ENST00000263923	NM_002253.2	442	aCg/aAg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35875645	35875645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	203	451	1	ENST00000303115.3:c.832G>T	p.Asp278Tyr	p.D278Y	ENST00000303115	NM_002185.3	278	Gat/Tat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32165219	32165219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	542	534	0	ENST00000375023.3:c.4909C>A	p.Pro1637Thr	p.P1637T	ENST00000375023	NM_004557.3	1637	Ccc/Acc																																																																														
PARK2	0	MSKCC	GRCh37	6	161970003	161970003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	278	620	0	ENST00000366898.1:c.966G>T	p.Glu322Asp	p.E322D	ENST00000366898	NM_004562.2	322	gaG/gaT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513227	106513227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	128	316	0	ENST00000359195.3:c.2131C>A	p.Gln711Lys	p.Q711K	ENST00000359195	NM_002649.2	711	Cag/Aag																																																																														
NBN	4683	MSKCC	GRCh37	8	90982779	90982779	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	213	307	0	ENST00000265433.3:c.709A>T	p.Lys237Ter	p.K237*	ENST00000265433	NM_002485.4	237	Aaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500882	8500882	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	429	457	0	ENST00000356435.5:c.2000C>A	p.Ser667Ter	p.S667*	ENST00000356435		667	tCg/tAg																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0031415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	158	617	0	ENST00000288135.5:c.1504_1509dup	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47087991	47087991	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	238	500	0	ENST00000409792.3:c.7084C>T	p.Gln2362Ter	p.Q2362*	ENST00000409792	NM_014159.6	2362	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	53	414	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RET	5979	MSKCC	GRCh37	10	43607569	43607570	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			724	166	927	3	ENST00000355710.3:c.1545_1546delinsAA	p.Cys515_Pro516delinsTer	p.C515_P516delins*	ENST00000355710	NM_020975.4	515	tgCCcc/tgAAcc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588156	69588156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			814	49	782	0	ENST00000168712.1:c.542T>C	p.Leu181Pro	p.L181P	ENST00000168712	NM_002007.2	181	cTg/cCg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625156	69625156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			963	54	842	0	ENST00000334134.2:c.637C>A	p.Gln213Lys	p.Q213K	ENST00000334134	NM_005247.2	213	Cag/Aag																																																																														
ATM	472	MSKCC	GRCh37	11	108121641	108121673	+	inframe_deletion	In_Frame_Del	DEL	CTGGAATAAAATTTGGTGTATTACCTTTCGTGG	CTGGAATAAAATTTGGTGTATTACCTTTCGTGG	-			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	40	508	0	ENST00000278616.4:c.1449_1481del	p.Trp484_Gly494del	p.W484_G494del	ENST00000278616	NM_000051.3	483	ctCTGGAATAAAATTTGGTGTATTACCTTTCGTGGt/ctt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118371784	118371784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	70	399	0	ENST00000534358.1:c.6241G>T	p.Val2081Phe	p.V2081F	ENST00000534358	NM_005933.3	2081	Gtc/Ttc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	394791	394791	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			329	98	467	0	ENST00000399788.2:c.4904G>A	p.Trp1635Ter	p.W1635*	ENST00000399788	NM_001042603.1	1635	tGg/tAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444039	49444039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			762	56	761	0	ENST00000301067.7:c.3332C>G	p.Ala1111Gly	p.A1111G	ENST00000301067	NM_003482.3	1111	gCc/gGc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001309	29001309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	53	365	0	ENST00000282397.4:c.1423C>T	p.His475Tyr	p.H475Y	ENST00000282397	NM_002019.4	475	Cat/Tat																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30322632	30322633	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	49	497	0	ENST00000322652.5:c.1645_1646delinsTT	p.Gly549Leu	p.G549L	ENST00000322652	NM_015355.2	549	GGg/TTg																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313457	30313457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			619	89	656	0	ENST00000262643.3:c.1057G>C	p.Ala353Pro	p.A353P	ENST00000262643	NM_001238.2	353	Gct/Cct																																																																														
ALK	238	MSKCC	GRCh37	2	29416347	29416347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			846	191	880	0	ENST00000389048.3:c.4606G>A	p.Glu1536Lys	p.E1536K	ENST00000389048	NM_004304.4	1536	Gag/Aag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661796	227661796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			758	50	893	0	ENST00000305123.5:c.1659G>T	p.Glu553Asp	p.E553D	ENST00000305123	NM_005544.2	553	gaG/gaT																																																																														
TOP1	7150	MSKCC	GRCh37	20	39721114	39721114	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	25	398	0	ENST00000361337.2:c.617G>T	p.Trp206Leu	p.W206L	ENST00000361337	NM_003286.2	206	tGg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101136	41101136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	60	769	0	ENST00000373198.4:c.1220G>T	p.Trp407Leu	p.W407L	ENST00000373198	NM_133170.3	407	tGg/tTg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201827	152201827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	60	421	0	ENST00000206249.3:c.681C>G	p.Cys227Trp	p.C227W	ENST00000206249	NM_000125.3	227	tgC/tgG																																																																														
PARK2	0	MSKCC	GRCh37	6	162622188	162622188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	73	394	0	ENST00000366898.1:c.509G>T	p.Arg170Met	p.R170M	ENST00000366898	NM_004562.2	170	aGg/aTg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729536	41729536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	79	667	0	ENST00000242208.4:c.993G>T	p.Lys331Asn	p.K331N	ENST00000242208	NM_002192.2	331	aaG/aaT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273078	55273078	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs865825533		P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			676	127	634	0	ENST00000275493.2:c.3401G>T	p.Gly1134Val	p.G1134V	ENST00000275493	NM_005228.3	1134	gGc/gTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81334819	81334819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	32	429	0	ENST00000222390.5:c.1897C>A	p.His633Asn	p.H633N	ENST00000222390	NM_000601.4	633	Cat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992980	68992980	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs1181417548		P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	20	335	0	ENST00000288368.4:c.1786-1G>C		p.X596_splice	ENST00000288368	NM_024870.2	596																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1315015	1315015	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0032016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			619	61	556	0				ENST00000381566																																																																																	
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	343	430	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0032261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	243	473	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829665	72829665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	152	647	1	ENST00000268489.5:c.6916G>A	p.Glu2306Lys	p.E2306K	ENST00000268489	NM_006885.3	2306	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757393	40757393	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0032261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	111	432	0	ENST00000373198.4:c.2904+1G>C		p.X968_splice	ENST00000373198	NM_133170.3	968																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	59	463	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	25	548	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426893	6426893	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519948		P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	18	480	1	ENST00000356142.4:c.86C>T	p.Pro29Leu	p.P29L	ENST00000356142	NM_018890.3	29	cCt/cTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231724	66231724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	52	532	0	ENST00000273854.3:c.1976C>A	p.Pro659His	p.P659H	ENST00000273854	NM_004439.5	659	cCc/cAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47143044	47143044	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	30	314	0	ENST00000409792.3:c.4919G>A	p.Trp1640Ter	p.W1640*	ENST00000409792	NM_014159.6	1640	tGg/tAg																																																																														
MAX	4149	MSKCC	GRCh37	14	65543382	65543382	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	61	475	0	ENST00000358664.4:c.296-1G>T		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																															
RET	5979	MSKCC	GRCh37	10	43619211	43619211	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	41	474	1	ENST00000355710.3:c.2894A>T	p.Lys965Met	p.K965M	ENST00000355710	NM_020975.4	965	aAg/aTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549388	21549388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	35	494	0	ENST00000382592.4:c.2888G>T	p.Gly963Val	p.G963V	ENST00000382592	NM_014572.2	963	gGg/gTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28896427	28896427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	42	329	0	ENST00000282397.4:c.3023G>T	p.Arg1008Ile	p.R1008I	ENST00000282397	NM_002019.4	1008	aGa/aTa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562881	95562881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	33	308	0	ENST00000343455.3:c.4376G>T	p.Gly1459Val	p.G1459V	ENST00000343455	NM_177438.2	1459	gGg/gTg																																																																														
BLM	641	MSKCC	GRCh37	15	91292626	91292626	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	29	205	0	ENST00000355112.3:c.128C>G	p.Ser43Ter	p.S43*	ENST00000355112	NM_000057.2	43	tCa/tGa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038152	128038152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	46	460	0	ENST00000285398.2:c.1398G>T	p.Leu466Phe	p.L466F	ENST00000285398	NM_000122.1	466	ttG/ttT																																																																														
PAK7	0	MSKCC	GRCh37	20	9560791	9560791	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	36	329	0	ENST00000353224.5:c.990+1G>T		p.X330_splice	ENST00000353224	NM_177990.2	330																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526738	106526738	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	34	300	0	ENST00000359195.3:c.3030+1G>T		p.X1010_splice	ENST00000359195	NM_002649.2	1010																																																																															
WHSC1L1	0	MSKCC	GRCh37	8	38194987	38194987	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	50	329	0	ENST00000317025.8:c.748-2A>G		p.X250_splice	ENST00000317025	NM_023034.1	250																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417508	139417508	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	75	843	0	ENST00000277541.6:c.536T>G	p.Val179Gly	p.V179G	ENST00000277541	NM_017617.3	179	gTc/gGc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53231065	53231065	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	84	587	0	ENST00000375401.3:c.1837G>C	p.Glu613Gln	p.E613Q	ENST00000375401	NM_004187.3	613	Gag/Cag																																																																														
AR	367	MSKCC	GRCh37	X	66765372	66765372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	49	613	0	ENST00000374690.3:c.384G>C	p.Glu128Asp	p.E128D	ENST00000374690	NM_000044.3	128	gaG/gaC																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242640	16242640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	66	393	0	ENST00000375759.3:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000375759	NM_015001.2	421	Gaa/Aaa																																																																														
SDHB	6390	MSKCC	GRCh37	1	17349200	17349200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	53	467	0	ENST00000375499.3:c.668G>A	p.Arg223Lys	p.R223K	ENST00000375499	NM_003000.2	223	aGa/aAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023471	27023471	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs967763683		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	85	485	1	ENST00000324856.7:c.577G>A	p.Glu193Lys	p.E193K	ENST00000324856	NM_006015.4	193	Gag/Aag																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598814	28598814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	113	692	0	ENST00000253063.3:c.374G>A	p.Cys125Tyr	p.C125Y	ENST00000253063	NM_031459.4	125	tGt/tAt																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695881	117695881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	94	610	0	ENST00000369458.3:c.556G>A	p.Asp186Asn	p.D186N	ENST00000369458	NM_024626.3	186	Gac/Aac																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551491	150551492	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCC	rs767680090		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	120	809	0	ENST00000369026.2:c.513_515dup	p.Glu171dup	p.E171dup	ENST00000369026	NM_021960.4	171	gac/gaGGAc																																																																														
FH	2271	MSKCC	GRCh37	1	241663871	241663871	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1131691244		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	33	418	0	ENST00000366560.3:c.1256C>T	p.Ser419Leu	p.S419L	ENST00000366560	NM_000143.3	419	tCa/tTa																																																																														
FH	2271	MSKCC	GRCh37	1	241682991	241682991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1226883651		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	40	325	0	ENST00000366560.3:c.32C>T	p.Ser11Leu	p.S11L	ENST00000366560	NM_000143.3	11	tCg/tTg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243828108	243828108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	116	487	1	ENST00000263826.5:c.250G>A	p.Glu84Lys	p.E84K	ENST00000263826	NM_005465.4	84	Gag/Aag																																																																														
TET1	80312	MSKCC	GRCh37	10	70405004	70405004	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	43	554	0	ENST00000373644.4:c.2518C>G	p.His840Asp	p.H840D	ENST00000373644	NM_030625.2	840	Cac/Gac																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112764363	112764363	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	97	352	0	ENST00000369452.4:c.973-1G>A		p.X325_splice	ENST00000369452	NM_007373.3	325																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939543	71939543	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	181	860	0	ENST00000298229.2:c.397+1G>A		p.X133_splice	ENST00000298229	NM_001567.3	133																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100435	102100435	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	58	374	0	ENST00000282441.5:c.1279G>A	p.Asp427Asn	p.D427N	ENST00000282441	NM_001130145.2	427	Gat/Aat																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195629	102195629	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs147101958		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	109	409	0	ENST00000263464.3:c.389A>C	p.Asn130Thr	p.N130T	ENST00000263464	NM_001165.4	130	aAc/aCc																																																																														
ATM	472	MSKCC	GRCh37	11	108165783	108165783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060501627		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	27	306	0	ENST00000278616.4:c.4906C>T	p.Gln1636Ter	p.Q1636*	ENST00000278616	NM_000051.3	1636	Cag/Tag																																																																														
ETV6	2120	MSKCC	GRCh37	12	12038954	12038954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	38	257	0	ENST00000396373.4:c.1247T>C	p.Leu416Ser	p.L416S	ENST00000396373	NM_001987.4	416	tTg/tCg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871250	12871250	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	14	144	0	ENST00000228872.4:c.475+2T>C		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18716371	18716371	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773501044		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	58	331	0	ENST00000266497.5:c.3718G>A	p.Glu1240Lys	p.E1240K	ENST00000266497		1240	Gag/Aag																																																																														
RECQL	5965	MSKCC	GRCh37	12	21624480	21624480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	57	693	0	ENST00000421138.2:c.1549G>A	p.Asp517Asn	p.D517N	ENST00000421138		517	Gat/Aat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243472	46243472	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	53	376	0	ENST00000334344.6:c.1825C>T	p.Gln609Ter	p.Q609*	ENST00000334344	NM_152641.2	609	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434880	49434880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	95	704	1	ENST00000301067.7:c.6673G>A	p.Glu2225Lys	p.E2225K	ENST00000301067	NM_003482.3	2225	Gaa/Aaa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487891	56487891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759562930		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	89	507	0	ENST00000267101.3:c.1622G>A	p.Arg541Gln	p.R541Q	ENST00000267101	NM_001982.3	541	cGa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133253950	133253950	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	85	482	0	ENST00000320574.5:c.800C>T	p.Pro267Leu	p.P267L	ENST00000320574	NM_006231.2	267	cCt/cTt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26923311	26923311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	83	339	0	ENST00000381527.3:c.307G>A	p.Asp103Asn	p.D103N	ENST00000381527	NM_001260.1	103	Gac/Aac																																																																														
CDK8	1024	MSKCC	GRCh37	13	26927979	26927979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	43	516	0	ENST00000381527.3:c.418C>T	p.His140Tyr	p.H140Y	ENST00000381527	NM_001260.1	140	Cac/Tac																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134873	41134873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	83	460	0	ENST00000379561.5:c.755G>A	p.Arg252Lys	p.R252K	ENST00000379561	NM_002015.3	252	aGa/aAa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336095	73336095	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780575971		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	43	249	0	ENST00000377767.4:c.2308C>T	p.Pro770Ser	p.P770S	ENST00000377767	NM_014953.3	770	Cca/Tca																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30396541	30396541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746045993		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	74	403	0	ENST00000331968.5:c.178G>A	p.Glu60Lys	p.E60K	ENST00000331968	NM_002742.2	60	Gag/Aag																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68290339	68290339	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	44	329	0	ENST00000487270.1:c.79T>C	p.Cys27Arg	p.C27R	ENST00000487270	NM_133509.3	27	Tgt/Cgt																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023037	33023037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	78	357	0	ENST00000300177.4:c.146C>T	p.Ser49Leu	p.S49L	ENST00000300177	NM_001191322.1	49	tCg/tTg																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675046	40675046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	154	556	0	ENST00000249776.8:c.10C>T	p.Pro4Ser	p.P4S	ENST00000249776	NM_033286.3	4	Ccc/Tcc																																																																														
RAD51	5888	MSKCC	GRCh37	15	40998441	40998441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	160	587	0	ENST00000267868.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000267868	NM_002875.4	98	Gag/Aag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66782870	66782870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	85	496	0	ENST00000307102.5:c.1099G>A	p.Glu367Lys	p.E367K	ENST00000307102	NM_002755.3	367	Gag/Aag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138453	2138453	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375075952		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	53	742	2	ENST00000219476.3:c.5266G>A	p.Glu1756Lys	p.E1756K	ENST00000219476	NM_000548.3	1756	Gag/Aag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639732	3639732	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759828401		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	76	935	0	ENST00000294008.3:c.3907G>A	p.Glu1303Lys	p.E1303K	ENST00000294008	NM_032444.2	1303	Gaa/Aaa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23614968	23614968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	60	349	0	ENST00000261584.4:c.3373G>A	p.Asp1125Asn	p.D1125N	ENST00000261584	NM_024675.3	1125	Gat/Aat																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128253	30128253	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766518304		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	46	718	0	ENST00000263025.4:c.979C>T	p.His327Tyr	p.H327Y	ENST00000263025	NM_002746.2	327	Cac/Tac																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	57	372	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68842729	68842729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	93	444	0	ENST00000261769.5:c.665G>A	p.Arg222Lys	p.R222K	ENST00000261769	NM_004360.3	222	aGa/aAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351577	89351577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	63	820	0	ENST00000301030.4:c.1373G>T	p.Arg458Leu	p.R458L	ENST00000301030	NM_001256183.1	458	cGa/cTa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89816263	89816264	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	77	547	0	ENST00000389301.3:c.3113_3114del	p.Leu1038ArgfsTer12	p.L1038Rfs*12	ENST00000389301	NM_000135.2	1038	cTC/c																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998985	11998985	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	39	333	0	ENST00000353533.5:c.487C>T	p.Gln163Ter	p.Q163*	ENST00000353533	NM_003010.3	163	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29654589	29654589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	61	243	0	ENST00000358273.4:c.5341G>A	p.Asp1781Asn	p.D1781N	ENST00000358273	NM_001042492.2	1781	Gac/Aac																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245861	41245861	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs80356898		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	56	662	0	ENST00000357654.3:c.1687C>G	p.Gln563Glu	p.Q563E	ENST00000357654	NM_007294.3	563	Cag/Gag																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56770110	56770110	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773998134		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	35	497	0	ENST00000337432.4:c.106G>A	p.Glu36Lys	p.E36K	ENST00000337432	NM_058216.2	36	Gag/Aag																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780677	56780677	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060502588		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	152	559	0	ENST00000337432.4:c.692C>T	p.Ser231Leu	p.S231L	ENST00000337432	NM_058216.2	231	tCa/tTa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59821797	59821797	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	49	472	0	ENST00000259008.2:c.2253G>C	p.Glu751Asp	p.E751D	ENST00000259008	NM_032043.2	751	gaG/gaC																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117755	70117755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	85	601	0	ENST00000245479.2:c.223G>A	p.Glu75Lys	p.E75K	ENST00000245479	NM_000346.3	75	Gag/Aag																																																																														
MALT1	10892	MSKCC	GRCh37	18	56367746	56367746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	64	362	0	ENST00000348428.3:c.572G>T	p.Arg191Leu	p.R191L	ENST00000348428	NM_006785.3	191	cGa/cTa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191099	2191099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	40	551	0	ENST00000398665.3:c.353C>G	p.Ser118Trp	p.S118W	ENST00000398665	NM_032482.2	118	tCg/tGg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602926	10602926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	49	824	0	ENST00000171111.5:c.652G>A	p.Glu218Lys	p.E218K	ENST00000171111	NM_203500.1	218	Gag/Aag																																																																														
CALR	811	MSKCC	GRCh37	19	13051440	13051440	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769245573		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	68	376	0	ENST00000316448.5:c.788C>T	p.Pro263Leu	p.P263L	ENST00000316448	NM_004343.3	263	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281581	15281581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	113	813	0	ENST00000263388.2:c.4792G>A	p.Asp1598Asn	p.D1598N	ENST00000263388	NM_000435.2	1598	Gat/Aat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303241	15303241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	75	778	1	ENST00000263388.2:c.287C>T	p.Ser96Leu	p.S96L	ENST00000263388	NM_000435.2	96	tCa/tTa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15364986	15364986	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768842514		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	40	541	0	ENST00000263377.2:c.2135C>T	p.Ser712Phe	p.S712F	ENST00000263377	NM_058243.2	712	tCt/tTt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366186	15366186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	57	712	0	ENST00000263377.2:c.1969G>A	p.Glu657Lys	p.E657K	ENST00000263377	NM_058243.2	657	Gag/Aag																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17389843	17389843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	127	763	0	ENST00000359435.4:c.976G>A	p.Glu326Lys	p.E326K	ENST00000359435	NM_001033549.1	326	Gag/Aag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266816	18266816	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750768114		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	105	495	0	ENST00000222254.8:c.127G>A	p.Val43Met	p.V43M	ENST00000222254	NM_005027.3	43	Gtg/Atg																																																																														
AXL	558	MSKCC	GRCh37	19	41762361	41762361	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	69	412	0	ENST00000301178.4:c.2042del	p.Asn681MetfsTer41	p.N681Mfs*41	ENST00000301178	NM_021913.4	681	Aat/at																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	96	698	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25498371	25498372	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	39	486	0	ENST00000264709.3:c.489_490delinsAA	p.Met163_Glu164delinsIleLys	p.M163_E164delinsIK	ENST00000264709	NM_175629.2	163	atGGag/atAAag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25978922	25978922	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1217311360		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	95	419	0	ENST00000435504.4:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000435504		334	tCa/tTa																																																																														
ALK	238	MSKCC	GRCh37	2	30143441	30143441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1326321652		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	64	288	0	ENST00000389048.3:c.85G>A	p.Ala29Thr	p.A29T	ENST00000389048	NM_004304.4	29	Gcg/Acg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250287	39250287	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1398	84	885	0	ENST00000402219.2:c.1282A>C	p.Asn428His	p.N428H	ENST00000402219	NM_005633.3	428	Aat/Cat																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46588072	46588072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	102	609	0	ENST00000263734.3:c.622C>T	p.His208Tyr	p.H208Y	ENST00000263734	NM_001430.4	208	Cac/Tac																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47612312	47612312	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs864622286		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	53	336	0	ENST00000263735.4:c.866C>T	p.Ser289Phe	p.S289F	ENST00000263735	NM_002354.2	289	tCc/tTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198270162	198270162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	39	301	0	ENST00000335508.6:c.1274G>A	p.Arg425Gln	p.R425Q	ENST00000335508	NM_012433.2	425	cGa/cAa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285763	198285763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	35	412	0	ENST00000335508.6:c.290C>T	p.Ser97Leu	p.S97L	ENST00000335508	NM_012433.2	97	tCa/tTa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209110098	209110100	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	63	611	0	ENST00000345146.2:c.463_465del	p.Thr155del	p.T155del	ENST00000345146	NM_005896.2	155	ACC/-																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662365	227662365	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771146954		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	48	500	0	ENST00000305123.5:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000305123	NM_005544.2	364	Cgg/Tgg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024227751		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	81	486	0	ENST00000305123.5:c.109G>A	p.Glu37Lys	p.E37K	ENST00000305123	NM_005544.2	37	Gag/Aag																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309736	30309736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	57	514	0	ENST00000307677.4:c.286G>A	p.Glu96Lys	p.E96K	ENST00000307677	NM_138578.1	96	Gag/Aag																																																																														
AURKA	6790	MSKCC	GRCh37	20	54956590	54956590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	54	407	0	ENST00000312783.6:c.604G>A	p.Asp202Asn	p.D202N	ENST00000312783	NM_198436.1	202	Gat/Aat																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24135748	24135748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	34	377	0	ENST00000263121.7:c.235C>T	p.His79Tyr	p.H79Y	ENST00000263121	NM_003073.3	79	Cac/Tac																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090482	37090482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	29	331	0	ENST00000231790.2:c.2077G>A	p.Glu693Lys	p.E693K	ENST00000231790	NM_000249.3	693	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	30	270	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47143043	47143043	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	67	380	0	ENST00000409792.3:c.4920G>A	p.Trp1640Ter	p.W1640*	ENST00000409792	NM_014159.6	1640	tgG/tgA																																																																														
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	57	637	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442080	52442080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	68	453	0	ENST00000460680.1:c.269C>T	p.Ser90Phe	p.S90F	ENST00000460680	NM_004656.3	90	tCt/tTt																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799680	72799680	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867810225		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	69	584	0	ENST00000325599.8:c.1489G>A	p.Glu497Lys	p.E497K	ENST00000325599	NM_018130.2	497	Gaa/Aaa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205859	128205859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	57	297	0	ENST00000341105.2:c.16G>A	p.Glu6Lys	p.E6K	ENST00000341105	NM_032638.4	6	Gag/Aag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825410	134825410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	44	475	0	ENST00000398015.3:c.926G>A	p.Arg309Gln	p.R309Q	ENST00000398015	NM_004441.4	309	cGa/cAa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433333	138433333	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	98	571	0	ENST00000289153.2:c.1279A>G	p.Thr427Ala	p.T427A	ENST00000289153	NM_006219.2	427	Acc/Gcc																																																																														
ATR	545	MSKCC	GRCh37	3	142231240	142231240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	81	617	0	ENST00000350721.4:c.4714G>A	p.Asp1572Asn	p.D1572N	ENST00000350721	NM_001184.3	1572	Gat/Aat																																																																														
ATR	545	MSKCC	GRCh37	3	142272837	142272837	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	41	329	0	ENST00000350721.4:c.2362C>G	p.His788Asp	p.H788D	ENST00000350721	NM_001184.3	788	Cat/Gat																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185161268	185161268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	87	574	0	ENST00000265026.3:c.695T>C	p.Ile232Thr	p.I232T	ENST00000265026	NM_004721.4	232	aTc/aCc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902418	1902418	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	75	651	1	ENST00000382895.3:c.37C>T	p.Gln13Ter	p.Q13*	ENST00000382895	NM_133330.2	13	Cag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156687	55156687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	64	344	0	ENST00000257290.5:c.3088G>C	p.Glu1030Gln	p.E1030Q	ENST00000257290	NM_006206.4	1030	Gag/Cag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280123	66280123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	34	354	0	ENST00000273854.3:c.1566G>C	p.Glu522Asp	p.E522D	ENST00000273854	NM_004439.5	522	gaG/gaC																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532729	187532729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	36	465	0	ENST00000441802.2:c.9664G>A	p.Asp3222Asn	p.D3222N	ENST00000441802	NM_005245.3	3222	Gac/Aac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549788	187549788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	37	545	1	ENST00000441802.2:c.4453G>A	p.Glu1485Lys	p.E1485K	ENST00000441802	NM_005245.3	1485	Gag/Aag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564797	86564797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	102	707	0	ENST00000274376.6:c.529C>T	p.Pro177Ser	p.P177S	ENST00000274376	NM_002890.2	177	Cca/Tca																																																																														
APC	324	MSKCC	GRCh37	5	112179740	112179740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	56	227	0	ENST00000257430.4:c.8449G>A	p.Asp2817Asn	p.D2817N	ENST00000257430	NM_000038.5	2817	Gat/Aat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721708	176721708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	48	444	0	ENST00000439151.2:c.7339C>T	p.Gln2447Ter	p.Q2447*	ENST00000439151	NM_022455.4	2447	Cag/Tag																																																																														
E2F3	1871	MSKCC	GRCh37	6	20480123	20480123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	28	337	0	ENST00000346618.3:c.440C>T	p.Ser147Leu	p.S147L	ENST00000346618	NM_001949.4	147	tCa/tTa																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158513	26158513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750700667		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	42	512	0	ENST00000289316.2:c.116C>T	p.Ser39Leu	p.S39L	ENST00000289316	NM_138720.2	39	tCa/tTa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288543	33288543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	40	433	0	ENST00000374542.5:c.1009G>A	p.Gly337Ser	p.G337S	ENST00000374542	NM_001141970.1	337	Ggc/Agc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652005	36652005	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	62	688	0	ENST00000244741.5:c.127C>T	p.Gln43Ter	p.Q43*	ENST00000244741	NM_000389.4	43	Cag/Tag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163841	152163841	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	31	462	0	ENST00000206249.3:c.562T>C	p.Cys188Arg	p.C188R	ENST00000206249	NM_000125.3	188	Tgc/Cgc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157222592	157222601	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGCACCT	CCCCGCACCT	-			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	76	537	0	ENST00000346085.5:c.1862_1871del	p.Pro621HisfsTer44	p.P621Hfs*44	ENST00000346085	NM_020732.3	620	cCCCCGCACCTc/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528471	157528471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	52	596	0	ENST00000346085.5:c.6196C>T	p.Pro2066Ser	p.P2066S	ENST00000346085	NM_020732.3	2066	Ccc/Tcc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035200	6035200	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587782833		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	32	371	0	ENST00000265849.7:c.868T>G	p.Phe290Val	p.F290V	ENST00000265849	NM_000535.5	290	Ttc/Gtc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6048638	6048638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	91	510	0	ENST00000265849.7:c.13G>A	p.Glu5Lys	p.E5K	ENST00000265849	NM_000535.5	5	Gag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116339695	116339695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	159	367	0	ENST00000397752.3:c.557C>T	p.Ser186Leu	p.S186L	ENST00000397752	NM_000245.2	186	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152008910	152008910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	46	398	1	ENST00000262189.6:c.712G>A	p.Asp238Asn	p.D238N	ENST00000262189	NM_170606.2	238	Gat/Aat																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540350	23540350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752189119		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	29	274	0	ENST00000380871.4:c.53C>T	p.Ala18Val	p.A18V	ENST00000380871	NM_006167.3	18	gCg/gTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38172285	38172285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	57	380	0	ENST00000317025.8:c.2122G>A	p.Glu708Lys	p.E708K	ENST00000317025	NM_023034.1	708	Gaa/Aaa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38272080	38272080	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	49	527	0	ENST00000425967.3:c.2138A>G	p.Asp713Gly	p.D713G	ENST00000425967	NM_001174067.1	713	gAt/gGt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372400	55372400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	53	870	0	ENST00000297316.4:c.1090G>A	p.Glu364Lys	p.E364K	ENST00000297316	NM_022454.3	364	Gaa/Aaa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741770	145741770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	58	703	0	ENST00000428558.2:c.733G>T	p.Val245Phe	p.V245F	ENST00000428558	NM_004260.3	245	Gtc/Ttc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270502	98270502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	103	453	0	ENST00000331920.6:c.142G>A	p.Asp48Asn	p.D48N	ENST00000331920	NM_000264.3	48	Gac/Aac																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	56	782	1	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922814	44922814	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761667415		P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	127	199	0	ENST00000377967.4:c.1675C>T	p.Arg559Cys	p.R559C	ENST00000377967	NM_021140.2	559	Cgt/Tgt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224133	53224133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	131	452	0	ENST00000375401.3:c.3418C>T	p.Leu1140Phe	p.L1140F	ENST00000375401	NM_004187.3	1140	Ctc/Ttc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224144	53224144	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	136	471	0	ENST00000375401.3:c.3407C>G	p.Ser1136Cys	p.S1136C	ENST00000375401	NM_004187.3	1136	tCt/tGt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53254068	53254068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	77	176	0	ENST00000375401.3:c.4G>A	p.Glu2Lys	p.E2K	ENST00000375401	NM_004187.3	2	Gag/Aag																																																																														
MED12	9968	MSKCC	GRCh37	X	70349237	70349237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	69	401	0	ENST00000374080.3:c.3649G>A	p.Asp1217Asn	p.D1217N	ENST00000374080		1217	Gat/Aat																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732533	74732533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	19	100	0	ENST00000359995.5:c.376C>T	p.Arg126Cys	p.R126C	ENST00000359995	NM_001195427.1	126	Cgc/Tgc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171751	36171794	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCTTGTATCTGAAGAGAATCAGAAAGGTCAATTATATGTAAAG	GCCTTGTATCTGAAGAGAATCAGAAAGGTCAATTATATGTAAAG	-			P-0032284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	66	287	0	ENST00000300305.3:c.806-35_814del		p.X269_splice	ENST00000300305		269																																																																															
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782329		P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	391	575	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444707	49444707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	315	634	0	ENST00000301067.7:c.2759C>A	p.Ser920Tyr	p.S920Y	ENST00000301067	NM_003482.3	920	tCt/tAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274087	10274087	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs764780280		P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	198	551	0	ENST00000330684.3:c.182C>A	p.Ala61Glu	p.A61E	ENST00000330684	NM_001134407.1	61	gCg/gAg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210830	2210830	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	111	360	0	ENST00000398665.3:c.1327C>T	p.Gln443Ter	p.Q443*	ENST00000398665	NM_032482.2	443	Cag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602646	10602646	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	258	689	0	ENST00000171111.5:c.932A>C	p.His311Pro	p.H311P	ENST00000171111	NM_203500.1	311	cAc/cCc																																																																														
MET	4233	MSKCC	GRCh37	7	116417482	116417482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	101	372	0	ENST00000397752.3:c.3299A>G	p.Asn1100Ser	p.N1100S	ENST00000397752	NM_000245.2	1100	aAt/aGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971182	21971206	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ACTCGGGCGCTGCCCATCATCATGA	ACTCGGGCGCTGCCCATCATCATGA	-			P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	179	370	0	ENST00000304494.5:c.152_176del	p.Val51GlyfsTer87	p.V51Gfs*87	ENST00000304494	NM_000077.4	51	gTCATGATGATGGGCAGCGCCCGAGTg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971182	21971206	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ACTCGGGCGCTGCCCATCATCATGA	ACTCGGGCGCTGCCCATCATCATGA	-			P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	179	370	0	ENST00000304494.5:c.152_176del	p.Val51GlyfsTer87	p.V51Gfs*87	ENST00000304494	NM_000077.4	51	gTCATGATGATGGGCAGCGCCCGAGTg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971182	21971206	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ACTCGGGCGCTGCCCATCATCATGA	ACTCGGGCGCTGCCCATCATCATGA	-			P-0032351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	179	370	0	ENST00000304494.5:c.152_176del	p.Val51GlyfsTer87	p.V51Gfs*87	ENST00000304494	NM_000077.4	51	gTCATGATGATGGGCAGCGCCCGAGTg/gg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0033243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	17	401	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
SDHB	6390	MSKCC	GRCh37	1	17354251	17354251	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	14	329	0	ENST00000375499.3:c.533A>G	p.Glu178Gly	p.E178G	ENST00000375499	NM_003000.2	178	gAg/gGg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525843	148525843	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	18	302	0	ENST00000320356.2:c.614A>T	p.Asp205Val	p.D205V	ENST00000320356	NM_004456.4	205	gAt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	104	1014	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	23	429	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0033307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	120	762	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	15	447	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28929495		P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	106	470	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	90	392	1	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082215	16082215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	40	611	0	ENST00000281043.3:c.29C>A	p.Pro10Gln	p.P10Q	ENST00000281043	NM_005378.4	10	cCg/cAg																																																																														
RB1	5925	MSKCC	GRCh37	13	48941724	48941724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	55	299	0	ENST00000267163.4:c.1034C>A	p.Thr345Asn	p.T345N	ENST00000267163	NM_000321.2	345	aCt/aAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48941732	48941732	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	55	301	0	ENST00000267163.4:c.1042del	p.Ile348Ter	p.I348*	ENST00000267163	NM_000321.2	348	Ata/ta																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929443	81929443	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	43	477	0	ENST00000359376.3:c.1105del	p.Val369SerfsTer33	p.V369Sfs*33	ENST00000359376	NM_002661.3	368	ccG/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0034132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	256	587	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0034132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	2125	547	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
ALK	238	MSKCC	GRCh37	2	29917782	29917782	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56077855		P-0034132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	48	477	2	ENST00000389048.3:c.886G>A	p.Glu296Lys	p.E296K	ENST00000389048	NM_004304.4	296	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733265	40733265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	131	503	0	ENST00000373198.4:c.3541A>G	p.Asn1181Asp	p.N1181D	ENST00000373198	NM_133170.3	1181	Aat/Gat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40828011	40828011	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	88	339	0	ENST00000373198.4:c.2417A>T	p.Gln806Leu	p.Q806L	ENST00000373198	NM_133170.3	806	cAg/cTg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421391	12421391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140915035		P-0034132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	55	572	0	ENST00000287820.6:c.271G>A	p.Ala91Thr	p.A91T	ENST00000287820	NM_015869.4	91	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112090646	112090646	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	62	283	0	ENST00000257430.4:c.59A>C	p.Asn20Thr	p.N20T	ENST00000257430	NM_000038.5	20	aAc/aCc																																																																														
SMO	6608	MSKCC	GRCh37	7	128845065	128845065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	79	585	0	ENST00000249373.3:c.559T>C	p.Phe187Leu	p.F187L	ENST00000249373	NM_005631.4	187	Ttc/Ctc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391168	89391168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772463834		P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	78	532	0	ENST00000336596.2:c.1234G>A	p.Val412Ile	p.V412I	ENST00000336596	NM_005233.5	412	Gtt/Att																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400190	41400190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	89	476	0	ENST00000373198.4:c.569G>A	p.Arg190Lys	p.R190K	ENST00000373198	NM_133170.3	190	aGa/aAa																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267600971		P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	275	857	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956771	68956771	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774302685		P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	90	762	1	ENST00000288368.4:c.889C>T	p.Arg297Cys	p.R297C	ENST00000288368	NM_024870.2	297	Cgt/Tgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945396	151945396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	105	695	0	ENST00000262189.6:c.2123C>T	p.Ser708Leu	p.S708L	ENST00000262189	NM_170606.2	708	tCa/tTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790031	40790031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	123	656	1	ENST00000373198.4:c.2700G>A	p.Met900Ile	p.M900I	ENST00000373198	NM_133170.3	900	atG/atA																																																																														
EZH1	2145	MSKCC	GRCh37	17	40858195	40858195	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777686988		P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	127	716	1	ENST00000428826.2:c.1669C>T	p.Arg557Cys	p.R557C	ENST00000428826		557	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	88	444	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27098997	27098997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	70	488	0	ENST00000324856.7:c.3413C>T	p.Ser1138Leu	p.S1138L	ENST00000324856	NM_006015.4	1138	tCa/tTa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256530	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	182	728	1	ENST00000369535.4:c.181_182delinsAT	p.Gln61Ile	p.Q61I	ENST00000369535	NM_002524.4	61	CAa/ATa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577271	64577271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	131	757	1	ENST00000337652.1:c.311C>T	p.Ser104Phe	p.S104F	ENST00000337652	NM_130803.2	104	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245486	46245486	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	54	342	0	ENST00000334344.6:c.3580del	p.Gln1194SerfsTer10	p.Q1194Sfs*10	ENST00000334344	NM_152641.2	1194	Cag/ag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245690	46245690	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	70	357	0	ENST00000334344.6:c.3784A>T	p.Lys1262Ter	p.K1262*	ENST00000334344	NM_152641.2	1262	Aaa/Taa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431496	121431496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	113	597	0	ENST00000257555.6:c.700G>A	p.Glu234Lys	p.E234K	ENST00000257555		234	Gag/Aag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693926	47693926	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	45	413	0	ENST00000233146.2:c.1640A>C	p.Asn547Thr	p.N547T	ENST00000233146	NM_000251.2	547	aAt/aCt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225360625	225360625	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	50	459	0	ENST00000264414.4:c.1766A>C	p.Lys589Thr	p.K589T	ENST00000264414	NM_003590.4	589	aAg/aCg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12422937	12422937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	79	703	0	ENST00000287820.6:c.427G>A	p.Gly143Arg	p.G143R	ENST00000287820	NM_015869.4	143	Gga/Aga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803607	1803607	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	112	681	0	ENST00000260795.2:c.785A>G	p.Asn262Ser	p.N262S	ENST00000260795		262	aAc/aGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295270	1295271	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	101	497	1				ENST00000310581	NM_198253.2																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44949013	44949013	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	45	312	0	ENST00000377967.4:c.3574T>G	p.Ser1192Ala	p.S1192A	ENST00000377967	NM_021140.2	1192	Tct/Gct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	279	517	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0034332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	361	777	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0034332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	289	540	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	229	250	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	113	428	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
AR	367	MSKCC	GRCh37	X	66765239	66765239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	61	322	0	ENST00000374690.3:c.251C>A	p.Pro84His	p.P84H	ENST00000374690	NM_000044.3	84	cCc/cAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045500	47045500	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	109	543	0	ENST00000329236.7:c.2233G>T	p.Glu745Ter	p.E745*	ENST00000329236	NM_001204466.1	745	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570070	212570070	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs745408040		P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	100	445	2	ENST00000342788.4:c.1171G>T	p.Val391Phe	p.V391F	ENST00000342788	NM_005235.2	391	Gtc/Ttc																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309750	30309750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	91	538	0	ENST00000307677.4:c.272G>C	p.Arg91Thr	p.R91T	ENST00000307677	NM_138578.1	91	aGg/aCg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87339196	87339196	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	73	452	0	ENST00000277120.3:c.778A>T	p.Ser260Cys	p.S260C	ENST00000277120		260	Agt/Tgt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411750	63411750	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1349239165		P-0034562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	131	692	0	ENST00000330258.3:c.1417G>C	p.Asp473His	p.D473H	ENST00000330258	NM_152424.3	473	Gac/Cac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593519	48593519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	33	382	0	ENST00000342988.3:c.1270G>C	p.Asp424His	p.D424H	ENST00000342988	NM_005359.5	424	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7576926	7576927	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GC	GC	AT			P-0034606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	98	664	0	ENST00000269305.4:c.920-1_920delinsAT		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
FAT1	2195	MSKCC	GRCh37	4	187558028	187558028	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1288182768		P-0034606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	39	444	0	ENST00000441802.2:c.3683T>C	p.Ile1228Thr	p.I1228T	ENST00000441802	NM_005245.3	1228	aTt/aCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	301	458	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0034882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	273	670	1	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
SDHD	6392	MSKCC	GRCh37	11	111959594	111959594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	123	752	0	ENST00000375549.3:c.173G>A	p.Gly58Asp	p.G58D	ENST00000375549	NM_003002.3	58	gGc/gAc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112915532	112915532	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs774939392		P-0034882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	86	626	0	ENST00000351677.2:c.931A>G	p.Met311Val	p.M311V	ENST00000351677	NM_002834.3	311	Atg/Gtg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805762	46805762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	295	649	0	ENST00000290295.7:c.194C>A	p.Pro65Gln	p.P65Q	ENST00000290295	NM_006361.5	65	cCa/cAa																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139810996	139810996	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	327	703	0	ENST00000247668.2:c.607C>T	p.Gln203Ter	p.Q203*	ENST00000247668	NM_021138.3	203	Cag/Tag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	130	394	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0035827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	153	774	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	133	559	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	133	559	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	133	559	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
NF1	4763	MSKCC	GRCh37	17	29562632	29562632	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1060500346		P-0035827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	113	618	0	ENST00000358273.4:c.3712G>T	p.Glu1238Ter	p.E1238*	ENST00000358273	NM_001042492.2	1238	Gaa/Taa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100598	8100598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	114	696	0	ENST00000346208.3:c.572C>A	p.Pro191His	p.P191H	ENST00000346208		191	cCc/cAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402046	402046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	190	658	0	ENST00000399788.2:c.4745A>G	p.Lys1582Arg	p.K1582R	ENST00000399788	NM_001042603.1	1582	aAg/aGg																																																																														
POLE	5426	MSKCC	GRCh37	12	133219201	133219201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	132	877	0	ENST00000320574.5:c.4843G>A	p.Asp1615Asn	p.D1615N	ENST00000320574	NM_006231.2	1615	Gac/Aac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46205315	46205315	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	53	498	0	ENST00000334344.6:c.399C>G	p.Tyr133Ter	p.Y133*	ENST00000334344	NM_152641.2	133	taC/taG																																																																														
ARAF	369	MSKCC	GRCh37	X	47428161	47428161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	34	966	0	ENST00000377045.4:c.1121C>G	p.Thr374Ser	p.T374S	ENST00000377045	NM_001654.4	374	aCc/aGc																																																																														
AR	367	MSKCC	GRCh37	X	66942824	66942824	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	20	501	0	ENST00000374690.3:c.2605C>T	p.Pro869Ser	p.P869S	ENST00000374690	NM_000044.3	869	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	271	631	1	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099429	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAACAG	CAGCAGCAGCAGCAGCAGCAGCAACAG	-	rs910569810		P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	60	224	0	ENST00000346085.5:c.360_386del	p.Gln123_Gln131del	p.Q123_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAACAG/-																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	169	412	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881982	37881982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	202	638	0	ENST00000269571.5:c.2748G>A	p.Met916Ile	p.M916I	ENST00000269571		916	atG/atA																																																																														
RECQL	5965	MSKCC	GRCh37	12	21643155	21643155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	147	568	0	ENST00000421138.2:c.372G>C	p.Gln124His	p.Q124H	ENST00000421138		124	caG/caC																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476287	88476287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	187	579	0	ENST00000360948.2:c.1845G>C	p.Met615Ile	p.M615I	ENST00000360948	NM_001012338.2	615	atG/atC																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783970	50783970	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	207	540	0	ENST00000398568.2:c.361A>T	p.Lys121Ter	p.K121*	ENST00000398568	NM_001042412.1	121	Aaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677944	117677944	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	159	498	0	ENST00000368508.3:c.3989A>T	p.Asn1330Ile	p.N1330I	ENST00000368508	NM_002944.2	1330	aAt/aTt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401093	139401093	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0036114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	194	654	0	ENST00000277541.6:c.3902-2A>T		p.X1301_splice	ENST00000277541	NM_017617.3	1301																																																																															
MGA	23269	MSKCC	GRCh37	15	42040865	42040865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	86	365	0	ENST00000219905.7:c.5243C>T	p.Pro1748Leu	p.P1748L	ENST00000219905	NM_001164273.1	1748	cCa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577136	7577138	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0036770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	91	475	1	ENST00000269305.4:c.800_802del	p.Arg267_Asn268delinsHis	p.R267_N268delinsH	ENST00000269305	NM_001126112.2	267	cGGAac/cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0036784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	488	960	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189604190	189604190	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs781491083		P-0036784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	51	569	0	ENST00000264731.3:c.1357A>G	p.Ile453Val	p.I453V	ENST00000264731	NM_003722.4	453	Ata/Gta																																																																														
ATRX	546	MSKCC	GRCh37	X	76972710	76972710	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	44	432	0	ENST00000373344.5:c.31T>G	p.Leu11Val	p.L11V	ENST00000373344	NM_000489.3	11	Ttg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	596	403	1	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947852	178947852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	67	319	0	ENST00000263967.3:c.2727C>A	p.Phe909Leu	p.F909L	ENST00000263967	NM_006218.2	909	ttC/ttA																																																																														
NUF2	83540	MSKCC	GRCh37	1	163306609	163306609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	110	368	1	ENST00000271452.3:c.406G>A	p.Glu136Lys	p.E136K	ENST00000271452	NM_145697.2	136	Gaa/Aaa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100406	8100406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	132	641	0	ENST00000346208.3:c.380C>A	p.Pro127Gln	p.P127Q	ENST00000346208		127	cCg/cAg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337693	73337693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	74	220	0	ENST00000377767.4:c.2023G>T	p.Ala675Ser	p.A675S	ENST00000377767	NM_014953.3	675	Gca/Tca																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43700216	43700216	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	92	467	0	ENST00000382044.4:c.5671G>C	p.Glu1891Gln	p.E1891Q	ENST00000382044	NM_001141980.1	1891	Gag/Cag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971285	15971285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	112	430	0	ENST00000268712.3:c.4664C>T	p.Thr1555Ile	p.T1555I	ENST00000268712	NM_006311.3	1555	aCt/aTt																																																																														
ALK	238	MSKCC	GRCh37	2	29443658	29443658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	250	509	0	ENST00000389048.3:c.3559C>A	p.Leu1187Met	p.L1187M	ENST00000389048	NM_004304.4	1187	Ctg/Atg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155243	55155243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	72	465	0	ENST00000257290.5:c.2842G>C	p.Glu948Gln	p.E948Q	ENST00000257290	NM_006206.4	948	Gag/Cag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217125	66217125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	80	398	0	ENST00000273854.3:c.2490G>T	p.Glu830Asp	p.E830D	ENST00000273854	NM_004439.5	830	gaG/gaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549444	187549444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	112	459	1	ENST00000441802.2:c.4674C>A	p.His1558Gln	p.H1558Q	ENST00000441802	NM_005245.3	1558	caC/caA																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518776	176518776	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	103	610	0	ENST00000292408.4:c.694A>T	p.Ser232Cys	p.S232C	ENST00000292408	NM_213647.1	232	Agc/Tgc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120864	94120864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	67	432	0	ENST00000369303.4:c.187G>A	p.Glu63Lys	p.E63K	ENST00000369303	NM_004440.3	63	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002888	69002888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	134	286	0	ENST00000288368.4:c.2188G>C	p.Glu730Gln	p.E730Q	ENST00000288368	NM_024870.2	730	Gag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	39	204	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	178	391	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	178	391	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	144	846	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519922		P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	388	1006	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																														
AKT2	208	MSKCC	GRCh37	19	40741836	40741836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	206	632	0	ENST00000392038.2:c.1136C>T	p.Ser379Phe	p.S379F	ENST00000392038	NM_001626.4	379	tCc/tTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267698	198267698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	145	571	0	ENST00000335508.6:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000335508	NM_012433.2	594	cGa/cAa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413165	139413165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	841	999	0	ENST00000277541.6:c.977G>A	p.Gly326Asp	p.G326D	ENST00000277541	NM_017617.3	326	gGc/gAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	178	391	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
FH	2271	MSKCC	GRCh37	1	241667423	241667423	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913122		P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	182	581	1	ENST00000366560.3:c.1027C>T	p.Arg343Ter	p.R343*	ENST00000366560	NM_000143.3	343	Cga/Tga																																																																														
JUN	3725	MSKCC	GRCh37	1	59248064	59248064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	1903	439	0	ENST00000371222.2:c.679G>A	p.Glu227Lys	p.E227K	ENST00000371222	NM_002228.3	227	Gag/Aag																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504347	186504347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	98	365	0	ENST00000323963.5:c.684C>A	p.Phe228Leu	p.F228L	ENST00000323963		228	ttC/ttA																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257705	16257706	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	119	597	0	ENST00000375759.3:c.4970_4971delinsTT	p.Thr1657Ile	p.T1657I	ENST00000375759	NM_015001.2	1657	aCC/aTT																																																																														
RFWD2	0	MSKCC	GRCh37	1	176050287	176050288	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	57	393	0	ENST00000367669.3:c.1277_1277+1delinsAA		p.X426_splice	ENST00000367669	NM_022457.5	426																																																																															
PARP1	142	MSKCC	GRCh37	1	226570804	226570805	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	231	677	1	ENST00000366794.5:c.1091_1092delinsTT	p.Ser364Phe	p.S364F	ENST00000366794	NM_001618.3	364	tCC/tTT																																																																														
PARP1	142	MSKCC	GRCh37	1	226590027	226590027	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	252	712	0	ENST00000366794.5:c.174G>A	p.Trp58Ter	p.W58*	ENST00000366794	NM_001618.3	58	tgG/tgA																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14303148	14303148	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	56	655	0	ENST00000256196.4:c.527G>A	p.Arg176Lys	p.R176K	ENST00000256196		176	aGg/aAg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022533	12022534	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	239	725	1	ENST00000396373.4:c.639_640delinsTT	p.Pro214Ser	p.P214S	ENST00000396373	NM_001987.4	213	tcCCcg/tcTTcg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495832	56495832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	73	481	0	ENST00000267101.3:c.4022G>A	p.Arg1341Lys	p.R1341K	ENST00000267101	NM_001982.3	1341	aGa/aAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576177	88576177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	126	745	0	ENST00000360948.2:c.1496A>G	p.Asp499Gly	p.D499G	ENST00000360948	NM_001012338.2	499	gAc/gGc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679814	88679814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	129	572	0	ENST00000360948.2:c.649G>C	p.Val217Leu	p.V217L	ENST00000360948	NM_001012338.2	217	Gtc/Ctc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89352017	89352018	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	355	986	1	ENST00000301030.4:c.932_933delinsTT	p.Ser311Phe	p.S311F	ENST00000301030	NM_001256183.1	311	tCC/tTT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578450	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	332	887	2	ENST00000269305.4:c.480_481delinsAA	p.Met160_Ala161delinsIleThr	p.M160_A161delinsIT	ENST00000269305	NM_001126112.2	160	atGGcc/atAAcc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681049	37681050	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	188	620	0	ENST00000447079.4:c.3218_3219delinsAA	p.Gly1073Glu	p.G1073E	ENST00000447079	NM_015083.1	1073	gGG/gAA																																																																														
STAT3	6774	MSKCC	GRCh37	17	40481466	40481466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193922717		P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	204	664	0	ENST00000264657.5:c.1243G>A	p.Glu415Lys	p.E415K	ENST00000264657	NM_139276.2	415	Gag/Aag																																																																														
MALT1	10892	MSKCC	GRCh37	18	56411617	56411617	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	144	686	0	ENST00000348428.3:c.1801C>T	p.Gln601Ter	p.Q601*	ENST00000348428	NM_006785.3	601	Caa/Taa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353741	15353742	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	144	866	1	ENST00000263377.2:c.3138_3139delinsTT	p.Arg1047Trp	p.R1047W	ENST00000263377	NM_058243.2	1046	ccCCgg/ccTTgg																																																																														
AXL	558	MSKCC	GRCh37	19	41727836	41727836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765828639		P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	277	901	1	ENST00000301178.4:c.461C>T	p.Thr154Ile	p.T154I	ENST00000301178	NM_021913.4	154	aCc/aTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41527497	41527498	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	108	727	1	ENST00000263253.7:c.1388_1389delinsTT	p.Ser463Phe	p.S463F	ENST00000263253	NM_001429.3	463	tCC/tTT																																																																														
EP300	2033	MSKCC	GRCh37	22	41574868	41574868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	120	790	0	ENST00000263253.7:c.7153C>T	p.Leu2385Phe	p.L2385F	ENST00000263253	NM_001429.3	2385	Ctc/Ttc																																																																														
TERT	7015	MSKCC	GRCh37	5	1278881	1278881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1323064721		P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	134	792	0	ENST00000310581.5:c.2161C>T	p.Pro721Ser	p.P721S	ENST00000310581	NM_198253.2	721	Ccc/Tcc																																																																														
SESN1	27244	MSKCC	GRCh37	6	109308764	109308764	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1442130633		P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	31	434	0	ENST00000436639.2:c.1639A>G	p.Thr547Ala	p.T547A	ENST00000436639	NM_014454.2	547	Acc/Gcc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402583	139402583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	149	862	0	ENST00000277541.6:c.3334G>T	p.Val1112Phe	p.V1112F	ENST00000277541	NM_017617.3	1112	Gtt/Ttt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933496	39933497	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	258	469	1	ENST00000378444.4:c.1102_1103delinsTT	p.Pro368Phe	p.P368F	ENST00000378444	NM_001123385.1	368	CCt/TTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030538	47030538	+	intron_variant	Intron	SNP	C	C	T			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	230	424	0	ENST00000329236.7:c.201+1641C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
ELF3	1999	MSKCC	GRCh37	1	201981861	201981861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	263	888	0	ENST00000359651.3:c.572C>T	p.Pro191Leu	p.P191L	ENST00000359651		191	cCt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	92	702	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587776656		P-0037047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	86	824	0	ENST00000326873.7:c.843del	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	98	1151	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72241966	72241966	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	38	472	0	ENST00000357731.5:c.424T>C	p.Tyr142His	p.Y142H	ENST00000357731	NM_173808.2	142	Tat/Cat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0037064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	228	491	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TET1	80312	MSKCC	GRCh37	10	70446351	70446351	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	52	578	0	ENST00000373644.4:c.5291A>T	p.Glu1764Val	p.E1764V	ENST00000373644	NM_030625.2	1764	gAg/gTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106155884	106155884	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	37	474	0	ENST00000380013.4:c.785G>T	p.Cys262Phe	p.C262F	ENST00000380013	NM_001127208.2	262	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782620		P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	519	527	1	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																														
PGR	5241	MSKCC	GRCh37	11	100922222	100922222	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	289	261	0	ENST00000325455.5:c.2290G>T	p.Gly764Ter	p.G764*	ENST00000325455	NM_001202474.3	764	Gga/Tga																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31468126	31468126	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	524	323	0	ENST00000344624.3:c.2286C>G	p.Phe762Leu	p.F762L	ENST00000344624		762	ttC/ttG																																																																														
NF1	4763	MSKCC	GRCh37	17	29563039	29563039	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	176	249	0	ENST00000358273.4:c.3974G>T	p.Arg1325Met	p.R1325M	ENST00000358273	NM_001042492.2	1325	aGg/aTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435827	56435827	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140873038		P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	42	314	0	ENST00000407977.2:c.1310G>A	p.Arg437Gln	p.R437Q	ENST00000407977		437	cGg/cAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929500	81929500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	280	353	0	ENST00000359376.3:c.1161G>T	p.Gln387His	p.Q387H	ENST00000359376	NM_002661.3	387	caG/caT																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437614	56437614	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	174	243	0	ENST00000407977.2:c.850-2A>C		p.X284_splice	ENST00000407977		284																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281146	15281146	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	508	553	0	ENST00000263388.2:c.5110A>T	p.Met1704Leu	p.M1704L	ENST00000263388	NM_000435.2	1704	Atg/Ttg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528614	89528614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	61	128	0	ENST00000336596.2:c.2914C>A	p.Leu972Ile	p.L972I	ENST00000336596	NM_005233.5	972	Cta/Ata																																																																														
TP63	8626	MSKCC	GRCh37	3	189526218	189526218	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1316823566		P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	166	469	1	ENST00000264731.3:c.482C>T	p.Pro161Leu	p.P161L	ENST00000264731	NM_003722.4	161	cCa/cTa																																																																														
KIT	3815	MSKCC	GRCh37	4	55592162	55592162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	78	375	0	ENST00000288135.5:c.1486G>T	p.Asp496Tyr	p.D496Y	ENST00000288135	NM_000222.2	496	Gat/Tat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356259	66356259	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs745452853		P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	100	411	0	ENST00000273854.3:c.1238G>T	p.Arg413Met	p.R413M	ENST00000273854	NM_004439.5	413	aGg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112178939	112178939	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	100	205	0	ENST00000257430.4:c.7648G>C	p.Glu2550Gln	p.E2550Q	ENST00000257430	NM_000038.5	2550	Gag/Cag																																																																														
HGF	3082	MSKCC	GRCh37	7	81346547	81346547	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	93	162	0	ENST00000222390.5:c.1405+1G>C		p.X469_splice	ENST00000222390	NM_000601.4	469																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046471	69046471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	104	446	0	ENST00000288368.4:c.3944G>A	p.Gly1315Asp	p.G1315D	ENST00000288368	NM_024870.2	1315	gGt/gAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460532	8460532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	146	262	0	ENST00000356435.5:c.3754T>A	p.Ser1252Thr	p.S1252T	ENST00000356435		1252	Tca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	238	787	1	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100664	8100664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1477514775		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	172	715	1	ENST00000346208.3:c.638C>T	p.Ser213Leu	p.S213L	ENST00000346208		213	tCg/tTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602754	10602754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	265	875	0	ENST00000171111.5:c.824C>T	p.Ser275Leu	p.S275L	ENST00000171111	NM_203500.1	275	tCg/tTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140494187	140494187	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1158980679		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	327	874	3	ENST00000288602.6:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000288602	NM_004333.4	354	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341914	8341914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	164	667	0	ENST00000356435.5:c.4726G>A	p.Glu1576Lys	p.E1576K	ENST00000356435		1576	Gaa/Aaa																																																																														
CBL	867	MSKCC	GRCh37	11	119149241	119149241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867564832		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	217	630	0	ENST00000264033.4:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000264033	NM_005188.3	417	Cct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29592318	29592318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	168	577	0	ENST00000358273.4:c.4796C>T	p.Ser1599Phe	p.S1599F	ENST00000358273	NM_001042492.2	1599	tCc/tTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445067	89445067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	164	470	0	ENST00000336596.2:c.1387C>T	p.Pro463Ser	p.P463S	ENST00000336596	NM_005233.5	463	Cct/Tct																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495496	149495496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1205902689		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	318	935	2	ENST00000261799.4:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000261799	NM_002609.3	1051	Gaa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142232477	142232477	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	131	461	1	ENST00000350721.4:c.4507C>T	p.Arg1503Ter	p.R1503*	ENST00000350721	NM_001184.3	1503	Cga/Tga																																																																														
CCND3	896	MSKCC	GRCh37	6	41908122	41908122	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3218089		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	186	644	0	ENST00000372991.4:c.400C>T	p.Pro134Ser	p.P134S	ENST00000372991	NM_001760.3	134	Ccc/Tcc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248677	10248677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1259943763		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	82	424	0	ENST00000340748.4:c.4076C>T	p.Ser1359Leu	p.S1359L	ENST00000340748		1359	tCg/tTg																																																																														
LATS1	9113	MSKCC	GRCh37	6	149982885	149982885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139248642		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	124	540	0	ENST00000253339.5:c.3373C>T	p.Arg1125Cys	p.R1125C	ENST00000253339		1125	Cgc/Tgc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498692	246498692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	221	644	0	ENST00000388985.4:c.313C>T	p.Leu105Phe	p.L105F	ENST00000388985		105	Ctt/Ttt																																																																														
NF1	4763	MSKCC	GRCh37	17	29676136	29676136	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs772348111		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	87	287	0	ENST00000358273.4:c.7190-2A>G		p.X2397_splice	ENST00000358273	NM_001042492.2	2397																																																																															
RAD50	10111	MSKCC	GRCh37	5	131924402	131924402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	124	376	0	ENST00000265335.6:c.1075C>T	p.Arg359Cys	p.R359C	ENST00000265335		359	Cgc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032006	10032006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	197	748	0	ENST00000330684.3:c.817C>T	p.Pro273Ser	p.P273S	ENST00000330684	NM_001134407.1	273	Cca/Tca																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647308	23647308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	230	801	0	ENST00000261584.4:c.559C>T	p.Pro187Ser	p.P187S	ENST00000261584	NM_024675.3	187	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	145	456	0				ENST00000310581	NM_198253.2																																																																																
FAT1	2195	MSKCC	GRCh37	4	187524168	187524168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	95	443	0	ENST00000441802.2:c.11371C>T	p.His3791Tyr	p.H3791Y	ENST00000441802	NM_005245.3	3791	Cac/Tac																																																																														
STK40	83931	MSKCC	GRCh37	1	36821031	36821031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1356391159		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	218	657	0	ENST00000373129.3:c.346C>T	p.Arg116Cys	p.R116C	ENST00000373129	NM_032017.1	116	Cgc/Tgc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104264000	104264000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	160	539	0	ENST00000369902.3:c.91C>T	p.Pro31Ser	p.P31S	ENST00000369902	NM_016169.3	31	Ccc/Tcc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948407	71948407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	279	1035	0	ENST00000298229.2:c.3119C>T	p.Ser1040Leu	p.S1040L	ENST00000298229	NM_001567.3	1040	tCa/tTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641517	18641517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	105	394	0	ENST00000266497.5:c.2516G>A	p.Gly839Glu	p.G839E	ENST00000266497		839	gGa/gAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432461	49432461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	235	791	0	ENST00000301067.7:c.8678C>A	p.Thr2893Asn	p.T2893N	ENST00000301067	NM_003482.3	2893	aCt/aAt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28897044	28897044	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41291686		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	223	575	0	ENST00000282397.4:c.2836G>A	p.Glu946Lys	p.E946K	ENST00000282397	NM_002019.4	946	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	49033939	49033939	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	155	429	0	ENST00000267163.4:c.2076T>G	p.Tyr692Ter	p.Y692*	ENST00000267163	NM_000321.2	692	taT/taG																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609417	81609417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150821978		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	180	573	0	ENST00000298171.2:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000298171	NM_000369.2	339	Gaa/Aaa																																																																														
BLM	641	MSKCC	GRCh37	15	91290705	91290705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	117	414	0	ENST00000355112.3:c.83C>T	p.Ser28Leu	p.S28L	ENST00000355112	NM_000057.2	28	tCa/tTa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641565	23641565	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs878855104		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	248	808	0	ENST00000261584.4:c.1910C>T	p.Pro637Leu	p.P637L	ENST00000261584	NM_024675.3	637	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827384	72827384	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	300	921	0	ENST00000268489.5:c.9197A>G	p.Tyr3066Cys	p.Y3066C	ENST00000268489	NM_006885.3	3066	tAc/tGc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435641	56435641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	506	624	0	ENST00000407977.2:c.1496G>A	p.Ser499Asn	p.S499N	ENST00000407977		499	aGc/aAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532645	63532645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881405		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	236	758	0	ENST00000307078.5:c.1934C>T	p.Pro645Leu	p.P645L	ENST00000307078	NM_004655.3	645	cCc/cTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221729	36221729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	232	905	1	ENST00000222270.7:c.5398G>A	p.Glu1800Lys	p.E1800K	ENST00000222270	NM_014727.1	1800	Gag/Aag																																																																														
CD79A	973	MSKCC	GRCh37	19	42383305	42383305	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	163	555	0	ENST00000221972.3:c.325C>T	p.Gln109Ter	p.Q109*	ENST00000221972	NM_021601.3	109	Cag/Tag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018217	48018218	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	239	595	1	ENST00000234420.5:c.412_413delinsTT	p.Pro138Leu	p.P138L	ENST00000234420	NM_000179.2	138	CCa/TTa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719518	190719518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	73	274	0	ENST00000441310.2:c.1520C>T	p.Ser507Leu	p.S507L	ENST00000441310	NM_000534.4	507	tCa/tTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295810	212295810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	124	565	0	ENST00000342788.4:c.2503G>A	p.Glu835Lys	p.E835K	ENST00000342788	NM_005235.2	835	Gaa/Aaa																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795042	242795042	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	303	994	0	ENST00000334409.5:c.167T>C	p.Phe56Ser	p.F56S	ENST00000334409	NM_005018.2	56	tTc/tCc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164912	47164912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	125	318	0	ENST00000409792.3:c.1214C>T	p.Ser405Phe	p.S405F	ENST00000409792	NM_014159.6	405	tCt/tTt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71102861	71102861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	153	421	0	ENST00000318789.4:c.346C>T	p.Leu116Phe	p.L116F	ENST00000318789	NM_032682.5	116	Ctc/Ttc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391156	89391156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	179	527	0	ENST00000336596.2:c.1222G>A	p.Glu408Lys	p.E408K	ENST00000336596	NM_005233.5	408	Gag/Aag																																																																														
ATR	545	MSKCC	GRCh37	3	142183952	142183952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	152	480	0	ENST00000350721.4:c.7028C>T	p.Ser2343Phe	p.S2343F	ENST00000350721	NM_001184.3	2343	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937003	178937003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	172	648	0	ENST00000263967.3:c.1684C>T	p.Pro562Ser	p.P562S	ENST00000263967	NM_006218.2	562	Ccc/Tcc																																																																														
TP63	8626	MSKCC	GRCh37	3	189607197	189607197	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1438616472		P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	260	724	0	ENST00000264731.3:c.1576C>T	p.Pro526Ser	p.P526S	ENST00000264731	NM_003722.4	526	Cct/Tct																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159139	143159139	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	114	370	0	ENST00000262992.4:c.714A>T	p.Leu238Phe	p.L238F	ENST00000262992	NM_001101669.1	238	ttA/ttT																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332888	153332888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	131	531	0	ENST00000281708.4:c.68C>T	p.Pro23Leu	p.P23L	ENST00000281708	NM_033632.3	23	cCt/cTt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38964982	38964982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	74	304	0	ENST00000357387.3:c.1312C>T	p.Leu438Phe	p.L438F	ENST00000357387	NM_152756.3	438	Ctt/Ttt																																																																														
PARK2	0	MSKCC	GRCh37	6	162683640	162683640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	168	514	0	ENST00000366898.1:c.329C>T	p.Ser110Leu	p.S110L	ENST00000366898	NM_004562.2	110	tCa/tTa																																																																														
PARK2	0	MSKCC	GRCh37	6	162683785	162683785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	136	472	0	ENST00000366898.1:c.184G>A	p.Asp62Asn	p.D62N	ENST00000366898	NM_004562.2	62	Gat/Aat																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372124	55372124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	187	569	0	ENST00000297316.4:c.814C>T	p.Pro272Ser	p.P272S	ENST00000297316	NM_022454.3	272	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485977	8485977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	143	526	0	ENST00000356435.5:c.2840G>A	p.Arg947Lys	p.R947K	ENST00000356435		947	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1206165503		P-0037143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	420	772	1	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649650	206649650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	73	596	0	ENST00000367120.3:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000367120	NM_014002.3	162	cGg/cAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118345013	118345013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	57	177	0	ENST00000534358.1:c.3139G>A	p.Asp1047Asn	p.D1047N	ENST00000534358	NM_005933.3	1047	Gac/Aac																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622109	1622110	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0037143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	180	699	0	ENST00000344749.5:c.765_766del	p.Val256GlyfsTer92	p.V256Gfs*92	ENST00000344749	NM_001136139.2	255	ccGGtg/cctg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0037157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	891	428	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
MED12	9968	MSKCC	GRCh37	X	70343021	70343021	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs875989806		P-0037157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	47	531	0	ENST00000374080.3:c.1562G>A	p.Arg521His	p.R521H	ENST00000374080		521	cGt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211045	36211045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	169	732	0	ENST00000222270.7:c.796T>C	p.Trp266Arg	p.W266R	ENST00000222270	NM_014727.1	266	Tgg/Cgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55260475	55260475	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs397517136		P-0037157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	1040	485	0	ENST00000275493.2:c.2642T>C	p.Met881Thr	p.M881T	ENST00000275493	NM_005228.3	881	aTg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0037172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	246	600	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374141	118374141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	17	337	0	ENST00000534358.1:c.7534G>T	p.Ala2512Ser	p.A2512S	ENST00000534358	NM_005933.3	2512	Gcc/Tcc																																																																														
RARA	5914	MSKCC	GRCh37	17	38487561	38487561	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	68	530	0	ENST00000254066.5:c.91A>T	p.Met31Leu	p.M31L	ENST00000254066	NM_000964.3	31	Atg/Ttg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59853827	59853827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	18	351	0	ENST00000259008.2:c.2032G>A	p.Ala678Thr	p.A678T	ENST00000259008	NM_032043.2	678	Gca/Aca																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732967	30732967	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	57	336	0	ENST00000359013.4:c.1657del	p.Arg553ValfsTer36	p.R553Vfs*36	ENST00000359013	NM_001024847.2	552	gCc/gc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678508	88678508	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs183806623		P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	131	514	0	ENST00000360948.2:c.1028G>T	p.Arg343Leu	p.R343L	ENST00000360948	NM_001012338.2	343	cGg/cTg																																																																														
B2M	567	MSKCC	GRCh37	15	45007690	45007690	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1435502075		P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	34	453	0	ENST00000558401.1:c.137A>G	p.Tyr46Cys	p.Y46C	ENST00000558401	NM_004048.2	46	tAt/tGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29684293	29684294	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	322	514	0	ENST00000358273.4:c.7877dup	p.Val2627GlyfsTer7	p.V2627Gfs*7	ENST00000358273	NM_001042492.2	2626	ctg/cTtg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144647	55144647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	157	403	0	ENST00000257290.5:c.2121C>G	p.Ile707Met	p.I707M	ENST00000257290	NM_006206.4	707	atC/atG																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540815	187540815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	45	397	0	ENST00000441802.2:c.6925G>T	p.Asp2309Tyr	p.D2309Y	ENST00000441802	NM_005245.3	2309	Gat/Tat																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588190	67588190	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	76	276	0	ENST00000274335.5:c.1019+1G>T		p.X340_splice	ENST00000274335		340																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040062	180040062	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376188634		P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	405	773	1	ENST00000261937.6:c.3380G>A	p.Arg1127Gln	p.R1127Q	ENST00000261937	NM_182925.4	1127	cGg/cAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032545	47032555	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCACGGCGT	TCGCACGGCGT	C			P-0037275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	169	587	0	ENST00000329236.7:c.220_230delinsC	p.Ser74ArgfsTer8	p.S74Rfs*8	ENST00000329236	NM_001204466.1	74	TCGCACGGCGTg/Cg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	111	410	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	54	343	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	86	333	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
PAK7	0	MSKCC	GRCh37	20	9546725	9546725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1210292896		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	40	343	0	ENST00000353224.5:c.1297C>T	p.Arg433Trp	p.R433W	ENST00000353224	NM_177990.2	433	Cgg/Tgg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742480	17742480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	21	546	0	ENST00000250003.3:c.662G>A	p.Arg221Gln	p.R221Q	ENST00000250003	NM_002478.4	221	cGg/cAg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119900	70119943	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTAC	ACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTAC	-			P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	60	529	0	ENST00000245479.2:c.906_949del	p.His303GlnfsTer260	p.H303Qfs*260	ENST00000245479	NM_000346.3	301	aACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTAC/a																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5206828	5206828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1326058191		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	94	662	0	ENST00000357368.4:c.5804C>T	p.Ala1935Val	p.A1935V	ENST00000357368	NM_002850.3	1935	gCg/gTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812249	212812249	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	133	384	0	ENST00000342788.4:c.327A>C	p.Lys109Asn	p.K109N	ENST00000342788	NM_005235.2	109	aaA/aaC																																																																														
CUL3	8452	MSKCC	GRCh37	2	225365173	225365173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180155404		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	132	375	1	ENST00000264414.4:c.1517G>A	p.Arg506Gln	p.R506Q	ENST00000264414	NM_003590.4	506	cGg/cAg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800201	32800205	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCT	CAGCT	-			P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	61	404	0	ENST00000374899.4:c.1177_1181del	p.Ser393TrpfsTer88	p.S393Wfs*88	ENST00000374899	NM_018833.2	393	AGCTGt/t																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450301	50450301	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770551610		P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	84	547	1	ENST00000331340.3:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000331340	NM_006060.4	162	cGg/cAg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800211	32800211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	69	386	0	ENST00000374899.4:c.1171A>C	p.Met391Leu	p.M391L	ENST00000374899	NM_018833.2	391	Atg/Ctg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0037356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	7	408	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	384	446	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	601	566	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
TSC2	7249	MSKCC	GRCh37	16	2122859	2122859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	339	355	0	ENST00000219476.3:c.2230C>T	p.Pro744Ser	p.P744S	ENST00000219476	NM_000548.3	744	Cca/Tca																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933712	36933712	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	398	472	0	ENST00000361632.4:c.1687A>C	p.Thr563Pro	p.T563P	ENST00000361632		563	Acc/Ccc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112544	115112546	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	155	413	0	ENST00000257566.3:c.1194_1196del	p.Thr399del	p.T399del	ENST00000257566	NM_016569.3	398	acCACg/acg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325693	30325693	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	54	146	0	ENST00000322652.5:c.1891C>G	p.Gln631Glu	p.Q631E	ENST00000322652	NM_015355.2	631	Caa/Gaa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205068	128205068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	403	449	0	ENST00000341105.2:c.373C>T	p.Pro125Ser	p.P125S	ENST00000341105	NM_032638.4	125	Cca/Tca																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158767	26158767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	160	456	0	ENST00000289316.2:c.370A>G	p.Ser124Gly	p.S124G	ENST00000289316	NM_138720.2	124	Agt/Ggt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	91	406	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1218500	1218500	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs1131690951		P-0037396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	17	410	0	ENST00000326873.7:c.374+1A>G		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610415	10610415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	45	687	0	ENST00000171111.5:c.295G>T	p.Val99Leu	p.V99L	ENST00000171111	NM_203500.1	99	Gtg/Ttg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5066713	5066715	+	inframe_deletion	In_Frame_Del	DEL	GTA	GTA	-			P-0037396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	21	362	0	ENST00000381652.3:c.1250_1252del	p.Gly417_Asn418delinsAsp	p.G417_N418delinsD	ENST00000381652	NM_004972.3	417	gGTAat/gat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	13	549	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0037419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	24	786	3	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0037444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	216	562	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11308150	11308150	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs757384321		P-0037444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	39	404	0	ENST00000361445.4:c.842G>A	p.Arg281His	p.R281H	ENST00000361445	NM_004958.3	281	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0037448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	498	515	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126730	5126730	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1437629509		P-0037448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	306	389	0	ENST00000381652.3:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000381652	NM_004972.3	1113	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0037448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	541	430	1	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948682	71948682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	580	591	0	ENST00000298229.2:c.3394G>T	p.Glu1132Ter	p.E1132*	ENST00000298229	NM_001567.3	1132	Gag/Tag																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651540	206651540	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	151	482	0	ENST00000367120.3:c.850A>C	p.Ile284Leu	p.I284L	ENST00000367120	NM_014002.3	284	Atc/Ctc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99482470	99482470	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	454	473	0	ENST00000268035.6:c.3338T>A	p.Ile1113Asn	p.I1113N	ENST00000268035	NM_000875.3	1113	aTt/aAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144466	11144466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	233	529	0	ENST00000344626.4:c.3798C>A	p.Ser1266Arg	p.S1266R	ENST00000344626	NM_003072.3	1266	agC/agA																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086103	16086103	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	432	506	0	ENST00000281043.3:c.1279A>C	p.Thr427Pro	p.T427P	ENST00000281043	NM_005378.4	427	Act/Cct																																																																														
APC	324	MSKCC	GRCh37	5	112175685	112175685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	55	333	1	ENST00000257430.4:c.4394G>A	p.Ser1465Asn	p.S1465N	ENST00000257430	NM_000038.5	1465	aGt/aAt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371737	55371737	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	56	378	0	ENST00000297316.4:c.427A>G	p.Lys143Glu	p.K143E	ENST00000297316	NM_022454.3	143	Aag/Gag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037452-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	143	368	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858210	9858210	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756930722		P-0037452-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	79	492	0	ENST00000330684.3:c.3191C>T	p.Thr1064Met	p.T1064M	ENST00000330684	NM_001134407.1	1064	aCg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108206595	108206595	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037452-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	229	324	0	ENST00000278616.4:c.8175T>G	p.Asp2725Glu	p.D2725E	ENST00000278616	NM_000051.3	2725	gaT/gaG																																																																														
MGA	23269	MSKCC	GRCh37	15	42000315	42000316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037452-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	64	412	0	ENST00000219905.7:c.2337dup	p.Val780CysfsTer3	p.V780Cfs*3	ENST00000219905	NM_001164273.1	778	-/T																																																																														
MGA	23269	MSKCC	GRCh37	15	42042331	42042331	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037452-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	99	517	0	ENST00000219905.7:c.6526A>T	p.Lys2176Ter	p.K2176*	ENST00000219905	NM_001164273.1	2176	Aaa/Taa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276245	15276245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1159412147		P-0037452-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	40	530	0	ENST00000263388.2:c.5749G>A	p.Ala1917Thr	p.A1917T	ENST00000263388	NM_000435.2	1917	Gca/Aca																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495402	149495402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037452-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	123	595	0	ENST00000261799.4:c.3245C>A	p.Pro1082Gln	p.P1082Q	ENST00000261799	NM_002609.3	1082	cCg/cAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985558	2985558	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037452-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	90	405	0	ENST00000396946.4:c.253C>T	p.Gln85Ter	p.Q85*	ENST00000396946	NM_032415.4	85	Caa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	42000319	42000319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037452-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	75	421	1	ENST00000219905.7:c.2338G>T	p.Val780Phe	p.V780F	ENST00000219905	NM_001164273.1	780	Gtt/Ttt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	127	603	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	49	496	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472559	88472559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	80	583	0	ENST00000360948.2:c.1996G>T	p.Gly666Cys	p.G666C	ENST00000360948	NM_001012338.2	666	Ggt/Tgt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609373	81609373	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	149	525	1	ENST00000298171.2:c.971A>T	p.Gln324Leu	p.Q324L	ENST00000298171	NM_000369.2	324	cAg/cTg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217645	7217645	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	85	586	1	ENST00000380728.2:c.282A>T	p.Leu94Phe	p.L94F	ENST00000380728		94	ttA/ttT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549697	187549697	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	173	566	0	ENST00000441802.2:c.4544A>T	p.Tyr1515Phe	p.Y1515F	ENST00000441802	NM_005245.3	1515	tAt/tTt																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128321943	128321943	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	244	556	0	ENST00000265960.3:c.817C>A	p.Leu273Met	p.L273M	ENST00000265960	NM_001006617.1	273	Ctg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0037491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	255	527	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
SMO	6608	MSKCC	GRCh37	7	128843243	128843243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1173715127		P-0037491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	252	542	0	ENST00000249373.3:c.350G>A	p.Arg117His	p.R117H	ENST00000249373	NM_005631.4	117	cGc/cAc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625457	69625457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	265	500	0	ENST00000334134.2:c.336C>A	p.Ser112Arg	p.S112R	ENST00000334134	NM_005247.2	112	agC/agA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0037601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	330	570	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112400	115112400	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770040454		P-0037601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	45	375	1	ENST00000257566.3:c.1340G>A	p.Arg447His	p.R447H	ENST00000257566	NM_016569.3	447	cGc/cAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAGCAA	-	rs1238972450		P-0037601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	79	197	0	ENST00000346085.5:c.369_392del	p.Gln124_Gln131del	p.Q124_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAA/-																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023584	27023584	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	94	204	0	ENST00000324856.7:c.690del	p.Leu231Ter	p.L231*	ENST00000324856	NM_006015.4	230	gcG/gc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106498	27106498	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	121	667	0	ENST00000324856.7:c.6109C>T	p.Gln2037Ter	p.Q2037*	ENST00000324856	NM_006015.4	2037	Cag/Tag																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082152	16082219	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	AAGAAGCCCTCAGTCGCCGGCCGGGAGGCGAGCCGATGCCGAGCTGCTCCACGTCCACCATGCCGGGC	AAGAAGCCCTCAGTCGCCGGCCGGGAGGCGAGCCGATGCCGAGCTGCTCCACGTCCACCATGCCGGGC	-			P-0037601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	89	462	0	ENST00000281043.3:c.-34_34del		p.*12*	ENST00000281043	NM_005378.4																																																																																
PMS1	5378	MSKCC	GRCh37	2	190719821	190719821	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	135	321	0	ENST00000441310.2:c.1823T>G	p.Leu608Arg	p.L608R	ENST00000441310	NM_000534.4	608	cTg/cGg																																																																														
NF2	4771	MSKCC	GRCh37	22	30074285	30074285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	265	483	0	ENST00000338641.4:c.1547G>A	p.Arg516Gln	p.R516Q	ENST00000338641	NM_000268.3	516	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	130	578	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	70	404	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	96	362	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	89	398	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
RAD52	5893	MSKCC	GRCh37	12	1039289	1039289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11571421		P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	158	589	1	ENST00000358495.3:c.208C>T	p.Arg70Trp	p.R70W	ENST00000358495	NM_134424.2	70	Cgg/Tgg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	480	385	1	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174814	112174814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	88	313	0	ENST00000257430.4:c.3523C>T	p.Gln1175Ter	p.Q1175*	ENST00000257430	NM_000038.5	1175	Cag/Tag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43769854	43769854	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	178	654	0	ENST00000382044.4:c.892A>T	p.Lys298Ter	p.K298*	ENST00000382044	NM_001141980.1	298	Aag/Tag																																																																														
ERG	2078	MSKCC	GRCh37	21	39755524	39755524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	59	540	0	ENST00000288319.7:c.1241A>T	p.Asp414Val	p.D414V	ENST00000288319	NM_182918.3	414	gAc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0037621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	263	500	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420229	49420229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	177	499	1	ENST00000301067.7:c.15520C>T	p.Arg5174Trp	p.R5174W	ENST00000301067	NM_003482.3	5174	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133219897	133219897	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	98	479	0	ENST00000320574.5:c.4464C>G	p.Tyr1488Ter	p.Y1488*	ENST00000320574	NM_006231.2	1488	taC/taG																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665036	138665036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	15	31	0	ENST00000330315.3:c.529G>A	p.Gly177Ser	p.G177S	ENST00000330315	NM_023067.3	177	Ggc/Agc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984916	9984916	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	99	612	0	ENST00000330684.3:c.1049T>G	p.Phe350Cys	p.F350C	ENST00000330684	NM_001134407.1	350	tTc/tGc																																																																														
VHL	7428	MSKCC	GRCh37	3	10183724	10183724	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	147	889	0	ENST00000256474.2:c.193del	p.Ser65ArgfsTer2	p.S65Rfs*2	ENST00000256474	NM_000551.3	65	Tcg/cg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125729	47125745	+	frameshift_variant	Frame_Shift_Del	DEL	ATTCTCACTAGAATACC	ATTCTCACTAGAATACC	-			P-0037641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	156	496	0	ENST00000409792.3:c.5525_5541del	p.Gly1842AspfsTer12	p.G1842Dfs*12	ENST00000409792	NM_014159.6	1842	gGGTATTCTAGTGAGAAT/g																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439309	52439312	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	ATCT	ATCT	-			P-0037641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	142	617	0	ENST00000460680.1:c.932-2_933del		p.X311_splice	ENST00000460680	NM_004656.3	311																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	74	435	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560382	95560382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	149	582	0	ENST00000343455.3:c.5207G>T	p.Arg1736Leu	p.R1736L	ENST00000343455	NM_177438.2	1736	cGg/cTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70348505	70348505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	185	421	0	ENST00000374080.3:c.3412C>T	p.Arg1138Trp	p.R1138W	ENST00000374080		1138	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577535	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0037642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	153	886	1	ENST00000269305.4:c.746_747del	p.Arg249ThrfsTer14	p.R249Tfs*14	ENST00000269305	NM_001126112.2	249	aGG/a																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602595	10602595	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	200	904	4	ENST00000171111.5:c.983T>A	p.Ile328Asn	p.I328N	ENST00000171111	NM_203500.1	328	aTc/aAc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156936	106156936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	91	474	0	ENST00000380013.4:c.1837G>T	p.Gly613Trp	p.G613W	ENST00000380013	NM_001127208.2	613	Ggg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76938499	76938501	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0037643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	109	735	0	ENST00000373344.5:c.2247_2249del	p.Ser750del	p.S750del	ENST00000373344	NM_000489.3	749	tcTTCa/tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0037643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	199	945	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469896	157469896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	41	760	0	ENST00000346085.5:c.2690G>A	p.Gly897Glu	p.G897E	ENST00000346085	NM_020732.3	897	gGa/gAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455090	50455090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	51	323	0	ENST00000331340.3:c.637C>T	p.Arg213Ter	p.R213*	ENST00000331340	NM_006060.4	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	146	607	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226021	53226021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781785252		P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	47	414	0	ENST00000375401.3:c.2828G>A	p.Arg943Gln	p.R943Q	ENST00000375401	NM_004187.3	943	cGa/cAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972854	25972854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1005506744		P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	67	542	0	ENST00000435504.4:c.1571C>T	p.Ser524Leu	p.S524L	ENST00000435504		524	tCg/tTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562533	95562533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	49	339	0	ENST00000343455.3:c.4724G>T	p.Gly1575Val	p.G1575V	ENST00000343455	NM_177438.2	1575	gGg/gTg																																																																														
IDH2	3418	MSKCC	GRCh37	15	90645531	90645531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	12	50	0	ENST00000330062.3:c.92C>T	p.Ser31Leu	p.S31L	ENST00000330062	NM_002168.2	31	tCg/tTg																																																																														
RET	5979	MSKCC	GRCh37	10	43622047	43622047	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	73	397	0	ENST00000355710.3:c.3064A>T	p.Thr1022Ser	p.T1022S	ENST00000355710	NM_020975.4	1022	Act/Tct																																																																														
RAB35	11021	MSKCC	GRCh37	12	120535120	120535120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	283	559	0	ENST00000229340.5:c.535C>T	p.Gln179Ter	p.Q179*	ENST00000229340	NM_006861.6	179	Cag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600438	10600438	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	129	651	0	ENST00000171111.5:c.1417del	p.Tyr473MetfsTer27	p.Y473Mfs*27	ENST00000171111	NM_203500.1	473	Tat/at																																																																														
IDH1	3417	MSKCC	GRCh37	2	209103898	209103898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	34	420	0	ENST00000345146.2:c.1051G>C	p.Glu351Gln	p.E351Q	ENST00000345146	NM_005896.2	351	Gag/Cag																																																																														
TP63	8626	MSKCC	GRCh37	3	189582204	189582204	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	29	287	0	ENST00000264731.3:c.763G>C	p.Glu255Gln	p.E255Q	ENST00000264731	NM_003722.4	255	Gag/Cag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876296	35876296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	153	549	0	ENST00000303115.3:c.1088G>T	p.Arg363Ile	p.R363I	ENST00000303115	NM_002185.3	363	aGa/aTa																																																																														
SMO	6608	MSKCC	GRCh37	7	128852024	128852024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	118	754	0	ENST00000249373.3:c.2096G>T	p.Ser699Ile	p.S699I	ENST00000249373	NM_005631.4	699	aGt/aTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140534663	140534663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	36	331	0	ENST00000288602.6:c.250G>A	p.Glu84Lys	p.E84K	ENST00000288602	NM_004333.4	84	Gaa/Aaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195692	123195692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	37	220	0	ENST00000218089.9:c.1606C>A	p.His536Asn	p.H536N	ENST00000218089	NM_001042749.1	536	Cat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	63	461	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	49	839	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858941	57858941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754019701		P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	27	673	0	ENST00000228682.2:c.437C>T	p.Ser146Leu	p.S146L	ENST00000228682	NM_005269.2	146	tCg/tTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71949201	71949201	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	21	840	0	ENST00000298229.2:c.3668A>T	p.Asp1223Val	p.D1223V	ENST00000298229	NM_001567.3	1223	gAc/gTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434916	110434916	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs868077540		P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	15	910	0	ENST00000375856.3:c.3485C>A	p.Ser1162Tyr	p.S1162Y	ENST00000375856	NM_003749.2	1162	tCc/tAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435563	56435563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	11	731	0	ENST00000407977.2:c.1574G>A	p.Ser525Asn	p.S525N	ENST00000407977		525	aGt/aAt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039407	47039408	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0037652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	18	344	1	ENST00000329236.7:c.799_800delinsTT	p.Gly267Phe	p.G267F	ENST00000329236	NM_001204466.1	267	GGc/TTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	107	515	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	25	402	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151876985	151876985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	81	383	1	ENST00000262189.6:c.7376C>T	p.Pro2459Leu	p.P2459L	ENST00000262189	NM_170606.2	2459	cCa/cTa																																																																														
ATM	472	MSKCC	GRCh37	11	108213982	108213982	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	91	385	0	ENST00000278616.4:c.8302G>T	p.Glu2768Ter	p.E2768*	ENST00000278616	NM_000051.3	2768	Gaa/Taa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52724333	52724333	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	117	526	0	ENST00000322088.6:c.1465A>T	p.Met489Leu	p.M489L	ENST00000322088	NM_014225.5	489	Atg/Ttg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281942	39281942	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	55	377	0	ENST00000402219.2:c.533A>G	p.Gln178Arg	p.Q178R	ENST00000402219	NM_005633.3	178	cAa/cGa																																																																														
MET	4233	MSKCC	GRCh37	7	116339963	116339964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAAGAATAATCAGGTTCTGTTCCATAAACTCTGGATTGCATTCCTACATGGA			P-0037692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	31	400	0	ENST00000397752.3:c.827_879dup	p.Met294GlnfsTer3	p.M294Qfs*3	ENST00000397752	NM_000245.2	275	-/ACAAGAATAATCAGGTTCTGTTCCATAAACTCTGGATTGCATTCCTACATGGA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	121	793	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	134	800	0	ENST00000171111.5:c.1249G>T	p.Gly417Trp	p.G417W	ENST00000171111	NM_203500.1	417	Ggg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108236109	108236109	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	105	597	0	ENST00000278616.4:c.9045G>C	p.Glu3015Asp	p.E3015D	ENST00000278616	NM_000051.3	3015	gaG/gaC																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643510	52643510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	40	587	0	ENST00000394830.3:c.2386G>A	p.Glu796Lys	p.E796K	ENST00000394830	NM_018313.4	796	Gag/Aag																																																																														
DDR2	4921	MSKCC	GRCh37	1	162741912	162741912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	46	424	0	ENST00000367921.3:c.1603G>T	p.Gly535Cys	p.G535C	ENST00000367921	NM_006182.2	535	Ggc/Tgc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861141	57861141	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1541	122	432	0	ENST00000228682.2:c.938C>G	p.Ser313Ter	p.S313*	ENST00000228682	NM_005269.2	313	tCa/tGa																																																																														
POLE	5426	MSKCC	GRCh37	12	133220070	133220070	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	33	720	0	ENST00000320574.5:c.4367C>G	p.Ser1456Ter	p.S1456*	ENST00000320574	NM_006231.2	1456	tCa/tGa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28896939	28896939	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	46	470	0	ENST00000282397.4:c.2941G>T	p.Glu981Ter	p.E981*	ENST00000282397	NM_002019.4	981	Gag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832614	72832614	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	22	217	0	ENST00000268489.5:c.3968-1G>C		p.X1323_splice	ENST00000268489	NM_006885.3	1323																																																																															
TP53	7157	MSKCC	GRCh37	17	7579485	7579486	+	stop_gained	Nonsense_Mutation	DNP	CT	CT	AA			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	60	801	1	ENST00000269305.4:c.201_202delinsTT	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	67	ccAGag/ccTTag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448395	56448396	+	splice_acceptor_variant	Splice_Site	DNP	CT	CT	AG			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	55	704	1	ENST00000407977.2:c.253-2_253-1inv		p.X85_splice	ENST00000407977		85																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223304	2223304	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	124	779	1	ENST00000398665.3:c.3415G>T	p.Glu1139Ter	p.E1139*	ENST00000398665	NM_032482.2	1139	Gag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098469	11098469	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1187772743		P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	63	346	0	ENST00000344626.4:c.987G>T	p.Gln329His	p.Q329H	ENST00000344626	NM_003072.3	329	caG/caT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218513	36218513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	42	645	0	ENST00000222270.7:c.4292T>C	p.Leu1431Pro	p.L1431P	ENST00000222270	NM_014727.1	1431	cTc/cCc																																																																														
BBC3	27113	MSKCC	GRCh37	19	47729885	47729886	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	60	376	0	ENST00000449228.1:c.503dup	p.Asp171ArgfsTer79	p.D171Rfs*79	ENST00000449228	NM_001127240.2	168	ggc/ggGc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498376	89498376	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	60	260	0	ENST00000336596.2:c.2348G>T	p.Gly783Val	p.G783V	ENST00000336596	NM_005233.5	783	gGa/gTa																																																																														
ATR	545	MSKCC	GRCh37	3	142212078	142212078	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	122	653	2	ENST00000350721.4:c.5974G>T	p.Glu1992Ter	p.E1992*	ENST00000350721	NM_001184.3	1992	Gag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55131139	55131140	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	94	575	0	ENST00000257290.5:c.682_683delinsCT	p.Gly228Leu	p.G228L	ENST00000257290	NM_006206.4	228	GGg/CTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576754	67576754	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	38	388	0	ENST00000274335.5:c.837-1G>C		p.X279_splice	ENST00000274335		279																																																																															
SMO	6608	MSKCC	GRCh37	7	128845240	128845240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	29	467	0	ENST00000249373.3:c.734C>A	p.Thr245Lys	p.T245K	ENST00000249373	NM_005631.4	245	aCg/aAg																																																																														
SMO	6608	MSKCC	GRCh37	7	128852054	128852054	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369342481		P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	48	755	0	ENST00000249373.3:c.2126G>A	p.Arg709Gln	p.R709Q	ENST00000249373	NM_005631.4	709	cGg/cAg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868465	117868465	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	102	612	0	ENST00000297338.2:c.877C>G	p.Gln293Glu	p.Q293E	ENST00000297338	NM_006265.2	293	Caa/Gaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8525014	8525014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	30	417	0	ENST00000356435.5:c.590G>A	p.Ser197Asn	p.S197N	ENST00000356435		197	aGt/aAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	17	323	2				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0037755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	91	790	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118968	3118968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	46	1023	1	ENST00000078429.4:c.652C>T	p.His218Tyr	p.H218Y	ENST00000078429	NM_002067.2	218	Cac/Tac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162137	47162137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	59	629	0	ENST00000409792.3:c.3989C>T	p.Ser1330Phe	p.S1330F	ENST00000409792	NM_014159.6	1330	tCc/tTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622418	28622418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	31	666	1	ENST00000241453.7:c.1199G>A	p.Gly400Glu	p.G400E	ENST00000241453	NM_004119.2	400	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117632271	117632271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	39	656	1	ENST00000368508.3:c.6145C>T	p.Pro2049Ser	p.P2049S	ENST00000368508	NM_002944.2	2049	Cct/Tct																																																																														
FANCA	2175	MSKCC	GRCh37	16	89849483	89849483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776371246		P-0037755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	106	780	0	ENST00000389301.3:c.1498C>T	p.Pro500Ser	p.P500S	ENST00000389301	NM_000135.2	500	Ccc/Tcc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251701	212251701	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	56	600	1	ENST00000342788.4:c.3358C>T	p.Gln1120Ter	p.Q1120*	ENST00000342788	NM_005235.2	1120	Caa/Taa																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321678	62321678	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0037755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	88	859	0	ENST00000482936.1:c.2297C>T	p.Pro766Leu	p.P766L	ENST00000482936		766	cCc/cTc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936307	49936307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	42	737	0	ENST00000296474.3:c.1541G>A	p.Gly514Glu	p.G514E	ENST00000296474	NM_002447.2	514	gGg/gAg																																																																														
PARK2	0	MSKCC	GRCh37	6	162475191	162475191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	65	642	0	ENST00000366898.1:c.550G>A	p.Asp184Asn	p.D184N	ENST00000366898	NM_004562.2	184	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	283	614	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	210	762	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	164	389	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	150	445	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479795	67479795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs757106110		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	230	648	1	ENST00000327367.4:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000327367	NM_005902.3	368	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	154	728	8	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	178	772	5	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969933	81969933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752209691		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	184	647	0	ENST00000359376.3:c.3002G>A	p.Arg1001His	p.R1001H	ENST00000359376	NM_002661.3	1001	cGc/cAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681061	117681061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749977900		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	180	602	0	ENST00000368508.3:c.3559G>A	p.Val1187Ile	p.V1187I	ENST00000368508	NM_002944.2	1187	Gtt/Att																																																																														
CBL	867	MSKCC	GRCh37	11	119146717	119146717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	160	498	1	ENST00000264033.4:c.880C>T	p.Arg294Trp	p.R294W	ENST00000264033	NM_005188.3	294	Cgg/Tgg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	172	717	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275291	41275291	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750554859		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	175	513	0	ENST00000349496.5:c.1457G>A	p.Arg486His	p.R486H	ENST00000349496	NM_001904.3	486	cGc/cAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	255	716	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187527259	187527259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201982861		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	180	610	0	ENST00000441802.2:c.10315G>A	p.Val3439Ile	p.V3439I	ENST00000441802	NM_005245.3	3439	Gtc/Atc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148515125	148515125	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1193491117		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	118	556	0	ENST00000320356.2:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000320356	NM_004456.4	362	Cgg/Tgg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11303222	11303222	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747412972		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	169	705	2	ENST00000361445.4:c.1361G>A	p.Arg454His	p.R454H	ENST00000361445	NM_004958.3	454	cGc/cAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905629	50905629	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs776204287		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	209	859	1	ENST00000440232.2:c.757C>T	p.Arg253Trp	p.R253W	ENST00000440232	NM_002691.3	253	Cgg/Tgg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795003	242795003	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764200391		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	232	901	4	ENST00000334409.5:c.206G>A	p.Arg69His	p.R69H	ENST00000334409	NM_005018.2	69	cGc/cAc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176132028	176132028	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	159	582	0	ENST00000367669.3:c.739C>T	p.Gln247Ter	p.Q247*	ENST00000367669	NM_022457.5	247	Cag/Tag																																																																														
TET1	80312	MSKCC	GRCh37	10	70405623	70405623	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	167	646	1	ENST00000373644.4:c.3137A>G	p.Glu1046Gly	p.E1046G	ENST00000373644	NM_030625.2	1046	gAg/gGg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245162	46245162	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	163	594	1	ENST00000334344.6:c.3260del	p.Pro1087LeufsTer69	p.P1087Lfs*69	ENST00000334344	NM_152641.2	1086	Ccc/cc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73348148	73348148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	167	475	0	ENST00000377767.4:c.1037T>C	p.Val346Ala	p.V346A	ENST00000377767	NM_014953.3	346	gTa/gCa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643227	38643227	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	136	450	0	ENST00000299084.4:c.697T>A	p.Ser233Thr	p.S233T	ENST00000299084	NM_152594.2	233	Tca/Aca																																																																														
RAD51	5888	MSKCC	GRCh37	15	41001295	41001295	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148345609		P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	149	555	0	ENST00000267868.3:c.416C>T	p.Thr139Met	p.T139M	ENST00000267868	NM_002875.4	139	aCg/aTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133768	2133768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	181	792	0	ENST00000219476.3:c.3956A>C	p.Asp1319Ala	p.D1319A	ENST00000219476	NM_000548.3	1319	gAc/gCc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15280950	15280950	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	212	893	0	ENST00000263388.2:c.5146del	p.Glu1716ArgfsTer17	p.E1716Rfs*17	ENST00000263388	NM_000435.2	1716	Gag/ag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47657024	47657024	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	170	477	0	ENST00000233146.2:c.1220T>G	p.Leu407Arg	p.L407R	ENST00000233146	NM_000251.2	407	cTc/cGc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225365135	225365135	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	206	506	0	ENST00000264414.4:c.1555A>G	p.Thr519Ala	p.T519A	ENST00000264414	NM_003590.4	519	Aca/Gca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385155	41385155	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	189	798	1	ENST00000373198.4:c.806T>C	p.Ile269Thr	p.I269T	ENST00000373198	NM_133170.3	269	aTc/aCc																																																																														
TP63	8626	MSKCC	GRCh37	3	189526187	189526187	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	198	672	0	ENST00000264731.3:c.451C>T	p.Gln151Ter	p.Q151*	ENST00000264731	NM_003722.4	151	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539759	187539759	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	32	537	0	ENST00000441802.2:c.7981del	p.Leu2661SerfsTer62	p.L2661Sfs*62	ENST00000441802	NM_005245.3	2661	Ctc/tc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295394	1295394	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	140	164	1				ENST00000310581	NM_198253.2																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44922670	44922670	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	121	173	0	ENST00000377967.4:c.1531A>G	p.Arg511Gly	p.R511G	ENST00000377967	NM_021140.2	511	Aga/Gga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045001	47045001	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	256	441	0	ENST00000329236.7:c.2093G>T	p.Arg698Leu	p.R698L	ENST00000329236	NM_001204466.1	698	cGg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0037790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	630	1104	1	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788651	3788651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	388	495	1	ENST00000262367.5:c.4303G>C	p.Asp1435His	p.D1435H	ENST00000262367	NM_004380.2	1435	Gat/Cat																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941257	36941278	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCCGCACTCCTCCAGACCTGG	GCCCGCACTCCTCCAGACCTGG	-			P-0037790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	387	933	1	ENST00000361632.4:c.65-4_82del		p.X22_splice	ENST00000361632		22																																																																															
SDHC	6391	MSKCC	GRCh37	1	161284196	161284196	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs755235380		P-0037790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	359	562	1	ENST00000367975.2:c.1A>G	p.Met1?	p.M1?	ENST00000367975	NM_003001.3	1	Atg/Gtg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426253	49426253	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	673	1202	6	ENST00000301067.7:c.12235C>T	p.Gln4079Ter	p.Q4079*	ENST00000301067	NM_003482.3	4079	Caa/Taa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43773204	43773204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	327	536	0	ENST00000382044.4:c.388G>C	p.Val130Leu	p.V130L	ENST00000382044	NM_001141980.1	130	Gtg/Ctg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2124296	2124298	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0037790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	593	1139	0	ENST00000219476.3:c.2459_2461del	p.Ile820del	p.I820del	ENST00000219476	NM_000548.3	817	gaCATc/gac																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63526125	63526125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	498	818	4	ENST00000307078.5:c.2501G>T	p.Arg834Leu	p.R834L	ENST00000307078	NM_004655.3	834	cGg/cTg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966565	36966565	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	511	750	1	ENST00000358127.4:c.761A>C	p.Glu254Ala	p.E254A	ENST00000358127	NM_001280556.1	254	gAg/gCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448517	49448517	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763644658		P-0037925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	174	672	1	ENST00000301067.7:c.194G>A	p.Arg65His	p.R65H	ENST00000301067	NM_003482.3	65	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	225	874	1	ENST00000269305.4:c.526del	p.Cys176AlafsTer71	p.C176Afs*71	ENST00000269305	NM_001126112.2	176	Tgc/gc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30264414	30264414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1281747941		P-0037925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	207	581	0	ENST00000322652.5:c.149G>A	p.Gly50Asp	p.G50D	ENST00000322652	NM_015355.2	50	gGc/gAc																																																																														
RARA	5914	MSKCC	GRCh37	17	38508263	38508283	+	inframe_deletion	In_Frame_Del	DEL	GTGCGCAAAGCGCACCAGGAA	GTGCGCAAAGCGCACCAGGAA	-			P-0037925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	80	647	0	ENST00000254066.5:c.571_591del	p.Val191_Glu197del	p.V191_E197del	ENST00000254066	NM_000964.3	191	GTGCGCAAAGCGCACCAGGAA/-																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945083	151945083	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	40	819	0	ENST00000262189.6:c.2436G>T	p.Met812Ile	p.M812I	ENST00000262189	NM_170606.2	812	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	79	276	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602659	10602659	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	120	669	0	ENST00000171111.5:c.919G>T	p.Glu307Ter	p.E307*	ENST00000171111	NM_203500.1	307	Gag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1218483	1218483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs775595174		P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	82	462	1	ENST00000326873.7:c.358G>T	p.Glu120Ter	p.E120*	ENST00000326873	NM_000455.4	120	Gaa/Taa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646201	3646201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	98	705	0	ENST00000294008.3:c.1877G>C	p.Ser626Thr	p.S626T	ENST00000294008	NM_032444.2	626	aGc/aCc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858141	9858141	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	34	529	0	ENST00000330684.3:c.3260A>T	p.Lys1087Ile	p.K1087I	ENST00000330684	NM_001134407.1	1087	aAa/aTa																																																																														
ERG	2078	MSKCC	GRCh37	21	39764322	39764322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	173	544	0	ENST00000288319.7:c.790G>T	p.Gly264Cys	p.G264C	ENST00000288319	NM_182918.3	264	Ggc/Tgc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47155495	47155495	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	56	216	0	ENST00000409792.3:c.4587-1G>T		p.X1529_splice	ENST00000409792	NM_014159.6	1529																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876105	35876105	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	39	350	0	ENST00000303115.3:c.897T>A	p.Asn299Lys	p.N299K	ENST00000303115	NM_002185.3	299	aaT/aaA																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502640	149502640	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	70	401	0	ENST00000261799.4:c.2148del	p.Tyr716Ter	p.Y716*	ENST00000261799	NM_002609.3	716	taC/ta																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872461	35872461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	94	423	1	ENST00000216797.5:c.442del	p.Leu148TyrfsTer16	p.L148Yfs*16	ENST00000216797	NM_020529.2	148	Cta/ta																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599874	10599874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	204	651	0	ENST00000171111.5:c.1702G>T	p.Val568Phe	p.V568F	ENST00000171111	NM_203500.1	568	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	228	559	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NBN	4683	MSKCC	GRCh37	8	90955585	90955585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	60	333	0	ENST00000265433.3:c.2080C>T	p.Pro694Ser	p.P694S	ENST00000265433	NM_002485.4	694	Cct/Tct																																																																														
MGA	23269	MSKCC	GRCh37	15	42028423	42028423	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	117	328	0	ENST00000219905.7:c.3961A>G	p.Thr1321Ala	p.T1321A	ENST00000219905	NM_001164273.1	1321	Act/Gct																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884226	37884226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	46	656	0	ENST00000269571.5:c.3697C>A	p.Pro1233Thr	p.P1233T	ENST00000269571		1233	Cca/Aca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435889	56435889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	137	494	0	ENST00000407977.2:c.1248G>T	p.Trp416Cys	p.W416C	ENST00000407977		416	tgG/tgT																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313511	30313511	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	133	480	0	ENST00000262643.3:c.1110+1G>T		p.X370_splice	ENST00000262643	NM_001238.2	370																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25964971	25964971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	139	444	1	ENST00000435504.4:c.4235G>T	p.Gly1412Val	p.G1412V	ENST00000435504		1412	gGc/gTc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56111659	56111659	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	70	202	0	ENST00000399503.3:c.259T>G	p.Ser87Ala	p.S87A	ENST00000399503	NM_005921.1	87	Tcc/Gcc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168985	32168985	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	204	792	0	ENST00000375023.3:c.4048A>C	p.Lys1350Gln	p.K1350Q	ENST00000375023	NM_004557.3	1350	Aag/Cag																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271274	38271274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	178	771	0	ENST00000425967.3:c.2434C>T	p.Pro812Ser	p.P812S	ENST00000425967	NM_001174067.1	812	Ccc/Tcc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878894	117878894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	77	265	0	ENST00000297338.2:c.75G>T	p.Lys25Asn	p.K25N	ENST00000297338	NM_006265.2	25	aaG/aaT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	283	601	2	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026643	6026643	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs63750947		P-0039031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1405	106	1137	3	ENST00000265849.7:c.1753C>A	p.Leu585Ile	p.L585I	ENST00000265849	NM_000535.5	585	Ctt/Att																																																																														
TP53	7157	MSKCC	GRCh37	17	7576901	7576901	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	46	586	0	ENST00000269305.4:c.945del	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	315	tcT/tc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104715	69104715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	90	519	0	ENST00000288368.4:c.4559G>C	p.Arg1520Thr	p.R1520T	ENST00000288368	NM_024870.2	1520	aGg/aCg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227821	53227821	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0039031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	94	364	0	ENST00000375401.3:c.2369-2A>C		p.X790_splice	ENST00000375401	NM_004187.3	790																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43712526	43712526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767934572		P-0039219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	107	631	1	ENST00000382044.4:c.4658C>T	p.Ser1553Leu	p.S1553L	ENST00000382044	NM_001141980.1	1553	tCg/tTg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834557	156834557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	257	746	0	ENST00000524377.1:c.325G>T	p.Asp109Tyr	p.D109Y	ENST00000524377	NM_002529.3	109	Gat/Tat																																																																														
MGA	23269	MSKCC	GRCh37	15	42005533	42005533	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	220	488	0	ENST00000219905.7:c.3270del	p.Gly1092GlufsTer41	p.G1092Efs*41	ENST00000219905	NM_001164273.1	1090	gTt/gt																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233459	69233459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2144	142	354	0	ENST00000462284.1:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000462284	NM_002392.5	442	Gaa/Aaa																																																																														
ERF	2077	MSKCC	GRCh37	19	42754505	42754505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1174086151		P-0039257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	80	709	0	ENST00000222329.4:c.235G>A	p.Asp79Asn	p.D79N	ENST00000222329	NM_006494.2	79	Gac/Aac																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155259	55155259	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	65	470	0	ENST00000257290.5:c.2858T>G	p.Leu953Arg	p.L953R	ENST00000257290	NM_006206.4	953	cTg/cGg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156837936	156837936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141629165		P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	78	812	1	ENST00000524377.1:c.469C>T	p.Arg157Cys	p.R157C	ENST00000524377	NM_002529.3	157	Cgc/Tgc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239501	123239501	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	140	842	0	ENST00000358487.5:c.2336A>T	p.Tyr779Phe	p.Y779F	ENST00000358487	NM_000141.4	779	tAt/tTt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204831	94204831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	47	500	4	ENST00000323929.3:c.754G>T	p.Ala252Ser	p.A252S	ENST00000323929	NM_005591.3	252	Gct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	173	498	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133249236	133249236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	80	699	1	ENST00000320574.5:c.1663G>T	p.Asp555Tyr	p.D555Y	ENST00000320574	NM_006231.2	555	Gat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913438	32913438	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	57	585	0	ENST00000380152.3:c.4946A>G	p.Lys1649Arg	p.K1649R	ENST00000380152		1649	aAa/aGa																																																																														
MGA	23269	MSKCC	GRCh37	15	42059447	42059448	+	missense_variant	Missense_Mutation	DNP	CG	CG	TC			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	118	445	2	ENST00000219905.7:c.9167_9168delinsTC	p.Ser3056Phe	p.S3056F	ENST00000219905	NM_001164273.1	3056	tCG/tTC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992319	72992319	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs748909927		P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	191	875	1	ENST00000268489.5:c.1726G>T	p.Gly576Cys	p.G576C	ENST00000268489	NM_006885.3	576	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	181	772	2	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	103	650	2	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248530	212248530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	40	648	1	ENST00000342788.4:c.3737G>T	p.Ser1246Ile	p.S1246I	ENST00000342788	NM_005235.2	1246	aGc/aTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678777	52678777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	91	365	0	ENST00000394830.3:c.842A>G	p.Tyr281Cys	p.Y281C	ENST00000394830	NM_018313.4	281	tAt/tGt																																																																														
TP63	8626	MSKCC	GRCh37	3	189455600	189455600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	77	600	0	ENST00000264731.3:c.134A>G	p.Gln45Arg	p.Q45R	ENST00000264731	NM_003722.4	45	cAg/cGg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127397	55127397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	49	702	0	ENST00000257290.5:c.185C>T	p.Ser62Phe	p.S62F	ENST00000257290	NM_006206.4	62	tCt/tTt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144543	55144543	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	56	499	0	ENST00000257290.5:c.2017A>G	p.Ile673Val	p.I673V	ENST00000257290	NM_006206.4	673	Atc/Gtc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542365	187542365	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	31	444	0	ENST00000441802.2:c.5375T>A	p.Leu1792Gln	p.L1792Q	ENST00000441802	NM_005245.3	1792	cTg/cAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955088	93955088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	31	448	1	ENST00000369303.4:c.2810T>C	p.Met937Thr	p.M937T	ENST00000369303	NM_004440.3	937	aTg/aCg																																																																														
BTK	695	MSKCC	GRCh37	X	100630137	100630137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	179	512	1	ENST00000308731.7:c.136C>A	p.Arg46Ser	p.R46S	ENST00000308731	NM_000061.2	46	Cgt/Agt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	94	531	0	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	110	809	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																														
ARAF	369	MSKCC	GRCh37	X	47424679	47424679	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775921012		P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	123	639	0	ENST00000377045.4:c.487G>A	p.Gly163Arg	p.G163R	ENST00000377045	NM_001654.4	163	Gga/Aga																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597395	10597395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	139	728	0	ENST00000171111.5:c.1808G>A	p.Gly603Glu	p.G603E	ENST00000171111	NM_203500.1	603	gGg/gAg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732533	74732533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	30	192	0	ENST00000359995.5:c.376C>T	p.Arg126Cys	p.R126C	ENST00000359995	NM_001195427.1	126	Cgc/Tgc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17387662	17387662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	106	638	1	ENST00000359435.4:c.730G>T	p.Asp244Tyr	p.D244Y	ENST00000359435	NM_001033549.1	244	Gac/Tac																																																																														
TET2	54790	MSKCC	GRCh37	4	106190792	106190792	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	84	466	0	ENST00000380013.4:c.4070A>T	p.Glu1357Val	p.E1357V	ENST00000380013	NM_001127208.2	1357	gAg/gTg																																																																														
ARAF	369	MSKCC	GRCh37	X	47424293	47424293	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	76	584	0	ENST00000377045.4:c.298A>T	p.Asn100Tyr	p.N100Y	ENST00000377045	NM_001654.4	100	Aat/Tat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	231	409	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs886039484		P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	441	704	0	ENST00000269305.4:c.643A>C	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	Agt/Cgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857311	9857311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1245573153		P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	154	568	0	ENST00000330684.3:c.4090G>A	p.Asp1364Asn	p.D1364N	ENST00000330684	NM_001134407.1	1364	Gat/Aat																																																																														
RIT1	6016	MSKCC	GRCh37	1	155880256	155880256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	282	383	0	ENST00000368323.3:c.148C>T	p.His50Tyr	p.H50Y	ENST00000368323	NM_006912.5	50	Cat/Tat																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422160	81422160	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1276734165		P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	256	496	0	ENST00000298171.2:c.136C>T	p.Arg46Cys	p.R46C	ENST00000298171	NM_000369.2	46	Cgc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031883	10031883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	149	639	0	ENST00000330684.3:c.940C>G	p.Pro314Ala	p.P314A	ENST00000330684	NM_001134407.1	314	Ccc/Gcc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448333	56448342	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATGAATC	CTGATGAATC	-			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	472	783	0	ENST00000407977.2:c.305_314del	p.Gly102AlafsTer53	p.G102Afs*53	ENST00000407977		102	gGATTCATCAGc/gc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5273491	5273491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	425	792	0	ENST00000357368.4:c.341G>A	p.Gly114Glu	p.G114E	ENST00000357368	NM_002850.3	114	gGg/gAg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753087	42753087	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	75	754	0	ENST00000222329.4:c.1177G>T	p.Glu393Ter	p.E393*	ENST00000222329	NM_006494.2	393	Gag/Tag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31511162	31511162	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	265	659	0	ENST00000344624.3:c.1412C>G	p.Thr471Arg	p.T471R	ENST00000344624		471	aCg/aGg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566108	141566108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1458970957		P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	473	564	0	ENST00000220592.5:c.1156G>A	p.Ala386Thr	p.A386T	ENST00000220592	NM_012154.3	386	Gca/Aca																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921442	39921442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	283	598	0	ENST00000378444.4:c.4378A>G	p.Lys1460Glu	p.K1460E	ENST00000378444	NM_001123385.1	1460	Aag/Gag																																																																														
ATRX	546	MSKCC	GRCh37	X	76940461	76940461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	244	482	1	ENST00000373344.5:c.632G>A	p.Arg211His	p.R211H	ENST00000373344	NM_000489.3	211	cGt/cAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913444		P-0039531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	224	719	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0039531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			832	28	953	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0039531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			628	170	679	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17124926	17124926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	92	650	0	ENST00000285071.4:c.796G>T	p.Gly266Cys	p.G266C	ENST00000285071	NM_144997.5	266	Ggc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210381	36210381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			722	79	732	0	ENST00000222270.7:c.374G>T	p.Gly125Val	p.G125V	ENST00000222270	NM_014727.1	125	gGt/gTt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971307	13971307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	186	579	0	ENST00000405192.2:c.622C>A	p.Arg208Ser	p.R208S	ENST00000405192	NM_001163147.1	208	Cgt/Agt																																																																														
NF2	4771	MSKCC	GRCh37	22	30051643	30051647	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGA	GCAGA	-			P-0039616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	111	361	0	ENST00000338641.4:c.580_584del	p.Glu194ProfsTer7	p.E194Pfs*7	ENST00000338641	NM_000268.3	193	GCAGAg/g																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437817	52437821	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGA	CAAGA	-			P-0039616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	244	886	0	ENST00000460680.1:c.1340_1344del	p.Val447GlyfsTer2	p.V447Gfs*2	ENST00000460680	NM_004656.3	447	gTCTTG/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	78	860	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162336	47162336	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	34	438	0	ENST00000409792.3:c.3790C>T	p.Gln1264Ter	p.Q1264*	ENST00000409792	NM_014159.6	1264	Caa/Taa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289947	15289947	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779780504		P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	103	1116	1	ENST00000263388.2:c.3607G>A	p.Glu1203Lys	p.E1203K	ENST00000263388	NM_000435.2	1203	Gag/Aag																																																																														
ALK	238	MSKCC	GRCh37	2	29551347	29551347	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs372472978		P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	57	696	0	ENST00000389048.3:c.1283G>A	p.Gly428Glu	p.G428E	ENST00000389048	NM_004304.4	428	gGa/gAa																																																																														
RAC1	5879	MSKCC	GRCh37	7	6414397	6414397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	35	259	0	ENST00000356142.4:c.31G>A	p.Asp11Asn	p.D11N	ENST00000356142	NM_018890.3	11	Gac/Aac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600470	10600470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	107	810	0	ENST00000171111.5:c.1385G>A	p.Gly462Glu	p.G462E	ENST00000171111	NM_203500.1	462	gGg/gAg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40456575	40456575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs988135840		P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	131	897	2	ENST00000345506.4:c.1285C>T	p.Arg429Trp	p.R429W	ENST00000345506	NM_003152.3	429	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446025	49446025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	62	1235	1	ENST00000301067.7:c.1441G>A	p.Glu481Lys	p.E481K	ENST00000301067	NM_003482.3	481	Gag/Aag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95584006	95584006	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	57	474	0	ENST00000343455.3:c.1462C>T	p.Gln488Ter	p.Q488*	ENST00000343455	NM_177438.2	488	Cag/Tag																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78865611	78865611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	62	563	0	ENST00000306801.3:c.2075A>G	p.Tyr692Cys	p.Y692C	ENST00000306801	NM_020761.2	692	tAc/tGc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5211602	5211602	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	60	506	0	ENST00000357368.4:c.5233A>T	p.Arg1745Trp	p.R1745W	ENST00000357368	NM_002850.3	1745	Agg/Tgg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355413	15355413	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	69	835	0	ENST00000263377.2:c.2212-2A>T		p.X738_splice	ENST00000263377	NM_058243.2	738																																																																															
IDH1	3417	MSKCC	GRCh37	2	209104668	209104668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	77	607	0	ENST00000345146.2:c.910G>C	p.Glu304Gln	p.E304Q	ENST00000345146	NM_005896.2	304	Gaa/Caa																																																																														
EP300	2033	MSKCC	GRCh37	22	41573499	41573499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	88	946	0	ENST00000263253.7:c.5784G>A	p.Met1928Ile	p.M1928I	ENST00000263253	NM_001429.3	1928	atG/atA																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965385	68965385	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	76	831	0	ENST00000288368.4:c.997A>G	p.Thr333Ala	p.T333A	ENST00000288368	NM_024870.2	333	Aca/Gca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	76	552	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0039636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	129	967	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0039636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	107	713	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0039636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	107	713	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0039636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	107	713	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981300	201981300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	264	1033	0	ENST00000359651.3:c.379G>A	p.Asp127Asn	p.D127N	ENST00000359651		127	Gac/Aac																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449602	149449602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	200	905	1	ENST00000286301.3:c.1344G>T	p.Gln448His	p.Q448H	ENST00000286301	NM_005211.3	448	caG/caT																																																																														
EP300	2033	MSKCC	GRCh37	22	41531840	41531843	+	frameshift_variant	Frame_Shift_Del	DEL	GGAG	GGAG	-			P-0039636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	68	714	0	ENST00000263253.7:c.1553_1556del	p.Gly518ValfsTer2	p.G518Vfs*2	ENST00000263253	NM_001429.3	518	GGAGgt/gt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0039801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	38	659	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180471	94180471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	41	676	0	ENST00000323929.3:c.1697C>G	p.Thr566Ser	p.T566S	ENST00000323929	NM_005591.3	566	aCc/aGc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38147994	38147994	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0039801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	49	790	0	ENST00000317025.8:c.3117G>C	p.Lys1039Asn	p.K1039N	ENST00000317025	NM_023034.1	1039	aaG/aaC																																																																														
NBN	4683	MSKCC	GRCh37	8	90965837	90965837	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	30	402	0	ENST00000265433.3:c.1480C>T	p.Gln494Ter	p.Q494*	ENST00000265433	NM_002485.4	494	Caa/Taa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034417	47034417	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0039801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	38	492	1	ENST00000329236.7:c.272-1G>A		p.X91_splice	ENST00000329236	NM_001204466.1	91																																																																															
MED12	9968	MSKCC	GRCh37	X	70361191	70361191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	39	599	0	ENST00000374080.3:c.6382del	p.Gln2128AsnfsTer91	p.Q2128Nfs*91	ENST00000374080		2127	Ccc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	648	968	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29486070	29486070	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs746824139		P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	363	387	0	ENST00000358273.4:c.247C>T	p.Gln83Ter	p.Q83*	ENST00000358273	NM_001042492.2	83	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29661946	29661946	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868094590		P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	605	495	1	ENST00000358273.4:c.5903G>A	p.Arg1968Gln	p.R1968Q	ENST00000358273	NM_001042492.2	1968	cGa/cAa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9778894	9778894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	321	648	0	ENST00000377346.4:c.1163C>T	p.Ala388Val	p.A388V	ENST00000377346	NM_005026.3	388	gCc/gTc																																																																														
ATM	472	MSKCC	GRCh37	11	108098423	108098423	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	39	410	0	ENST00000278616.4:c.72G>C	p.Lys24Asn	p.K24N	ENST00000278616	NM_000051.3	24	aaG/aaC																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552716	18552716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	493	613	0	ENST00000266497.5:c.2127G>T	p.Met709Ile	p.M709I	ENST00000266497		709	atG/atT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3827660	3827660	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	88	385	1	ENST00000262367.5:c.2114-2A>G		p.X705_splice	ENST00000262367	NM_004380.2	705																																																																															
FANCA	2175	MSKCC	GRCh37	16	89836306	89836306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	424	829	0	ENST00000389301.3:c.2443C>T	p.Pro815Ser	p.P815S	ENST00000389301	NM_000135.2	815	Cct/Tct																																																																														
ATR	545	MSKCC	GRCh37	3	142217590	142217590	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	33	518	0	ENST00000350721.4:c.5407A>T	p.Arg1803Ter	p.R1803*	ENST00000350721	NM_001184.3	1803	Aga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230913	66230937	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATTCACCTTGTGATAAAGATGAA	AAATTCACCTTGTGATAAAGATGAA	-			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	20	391	0	ENST00000273854.3:c.2051-17_2058del		p.X684_splice	ENST00000273854	NM_004439.5	684																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021651	69021651	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	344	446	0	ENST00000288368.4:c.2939G>T	p.Gly980Val	p.G980V	ENST00000288368	NM_024870.2	980	gGg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578520	7578520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	451	698	3	ENST00000269305.4:c.410T>A	p.Leu137Gln	p.L137Q	ENST00000269305	NM_001126112.2	137	cTg/cAg																																																																														
CDK4	1019	MSKCC	GRCh37	12	58144819	58144819	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150281463		P-0039900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	98	424	0	ENST00000257904.6:c.409G>A	p.Val137Ile	p.V137I	ENST00000257904	NM_000075.3	137	Gtt/Att																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873105	134873105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749312347		P-0039900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	51	477	0	ENST00000398015.3:c.1409G>A	p.Arg470Gln	p.R470Q	ENST00000398015	NM_004441.4	470	cGg/cAg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325763	30325763	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777479817		P-0039900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	105	211	1	ENST00000322652.5:c.1961G>A	p.Arg654Gln	p.R654Q	ENST00000322652	NM_015355.2	654	cGa/cAa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372112	55372112	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1385441707		P-0039900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	250	380	1	ENST00000297316.4:c.802G>A	p.Gly268Ser	p.G268S	ENST00000297316	NM_022454.3	268	Ggt/Agt																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226252066	226252066	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	150	199	0	ENST00000366813.1:c.14A>T	p.Lys5Met	p.K5M	ENST00000366813		5	aAg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221315	36221315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	66	677	2	ENST00000222270.7:c.5149C>T	p.Arg1717Trp	p.R1717W	ENST00000222270	NM_014727.1	1717	Cgg/Tgg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920349	134920349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	235	401	2	ENST00000398015.3:c.2164G>A	p.Val722Met	p.V722M	ENST00000398015	NM_004441.4	722	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520008		P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			682	296	651	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244952	41244952	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41286300		P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			665	55	571	0	ENST00000357654.3:c.2596C>T	p.Arg866Cys	p.R866C	ENST00000357654	NM_007294.3	866	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057743	27057756	+	frameshift_variant	Frame_Shift_Del	DEL	CCTACTCCCAGCAA	CCTACTCCCAGCAA	-			P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			834	426	792	0	ENST00000324856.7:c.1453_1466del	p.Tyr485ThrfsTer133	p.Y485Tfs*133	ENST00000324856	NM_006015.4	484	cCCTACTCCCAGCAA/c																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251918	8251918	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			848	65	752	1	ENST00000335790.3:c.159C>A	p.Cys53Ter	p.C53*	ENST00000335790	NM_002315.2	53	tgC/tgA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343064	118343064	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	24	273	0	ENST00000534358.1:c.1190G>C	p.Arg397Thr	p.R397T	ENST00000534358	NM_005933.3	397	aGa/aCa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343120	118343120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	28	346	0	ENST00000534358.1:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000534358	NM_005933.3	416	Gct/Act																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223742	36223742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751646243		P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1358	103	858	0	ENST00000222270.7:c.6292G>A	p.Ala2098Thr	p.A2098T	ENST00000222270	NM_014727.1	2098	Gct/Act																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557206	187557206	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	59	449	0	ENST00000441802.2:c.4156G>C	p.Gly1386Arg	p.G1386R	ENST00000441802	NM_005245.3	1386	Ggc/Cgc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871297	35871297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	72	330	0	ENST00000303115.3:c.520del	p.Asp174MetfsTer8	p.D174Mfs*8	ENST00000303115	NM_002185.3	173	aaG/aa																																																																														
RB1	5925	MSKCC	GRCh37	13	48954221	48954221	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	119	211	0	ENST00000267163.4:c.1421+1G>A		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940370	49940370	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	270	706	0	ENST00000296474.3:c.673G>C	p.Ala225Pro	p.A225P	ENST00000296474	NM_002447.2	225	Gcc/Ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0039998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	75	712	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
PARP1	142	MSKCC	GRCh37	1	226595555	226595555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	49	368	0	ENST00000366794.5:c.76G>A	p.Glu26Lys	p.E26K	ENST00000366794	NM_001618.3	26	Gag/Aag																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912276	29912276	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0039998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	53	739	0	ENST00000376809.5:c.896-1G>C		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																															
ETV6	2120	MSKCC	GRCh37	12	11992229	11992229	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	19	263	0	ENST00000396373.4:c.319C>A	p.Pro107Thr	p.P107T	ENST00000396373	NM_001987.4	107	Cct/Act																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435962	49435962	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	74	682	0	ENST00000301067.7:c.6019G>T	p.Glu2007Ter	p.E2007*	ENST00000301067	NM_003482.3	2007	Gag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152027753	152027753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	61	561	0	ENST00000262189.6:c.322C>T	p.Leu108Phe	p.L108F	ENST00000262189	NM_170606.2	108	Ctt/Ttt																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	49	304	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057520000		P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	190	773	1	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056209	26056211	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs779842031		P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	12	377	0	ENST00000343677.2:c.446_448del	p.Lys149del	p.K149del	ENST00000343677	NM_005319.3	149	aAGAgc/agc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845366	151845366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	21	477	1	ENST00000262189.6:c.13646G>A	p.Arg4549His	p.R4549H	ENST00000262189	NM_170606.2	4549	cGc/cAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039294	47039294	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	287	380	0	ENST00000329236.7:c.686A>T	p.Asn229Ile	p.N229I	ENST00000329236	NM_001204466.1	229	aAc/aTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066641	94066641	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs772199348		P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	66	406	0	ENST00000369303.4:c.1118G>T	p.Ser373Ile	p.S373I	ENST00000369303	NM_004440.3	373	aGt/aTt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528505	157528505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	22	516	0	ENST00000346085.5:c.6230C>T	p.Ser2077Leu	p.S2077L	ENST00000346085	NM_020732.3	2077	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023211	27023212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	212	147	0	ENST00000324856.7:c.320_321dup	p.Gly108ArgfsTer7	p.G108Rfs*7	ENST00000324856	NM_006015.4	106	aac/aaCGc																																																																														
CBL	867	MSKCC	GRCh37	11	119077186	119077186	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750572996		P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	677	505	0	ENST00000264033.4:c.59C>T	p.Ser20Leu	p.S20L	ENST00000264033	NM_005188.3	20	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425053	49425053	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs745381478		P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	212	753	0	ENST00000301067.7:c.13435G>T	p.Gly4479Trp	p.G4479W	ENST00000301067	NM_003482.3	4479	Ggg/Tgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9538280	9538280	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	31	389	1	ENST00000353224.5:c.1718C>A	p.Ser573Tyr	p.S573Y	ENST00000353224	NM_177990.2	573	tCc/tAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713407	40713407	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	176	679	0	ENST00000373198.4:c.4108C>G	p.Arg1370Gly	p.R1370G	ENST00000373198	NM_133170.3	1370	Cgc/Ggc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256394	46256394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	20	365	0	ENST00000371998.3:c.622C>G	p.Leu208Val	p.L208V	ENST00000371998		208	Ctg/Gtg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47142948	47142948	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	48	316	0	ENST00000409792.3:c.5015G>T	p.Gly1672Val	p.G1672V	ENST00000409792	NM_014159.6	1672	gGa/gTa																																																																														
ATR	545	MSKCC	GRCh37	3	142275353	142275353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	20	355	0	ENST00000350721.4:c.1950G>T	p.Glu650Asp	p.E650D	ENST00000350721	NM_001184.3	650	gaG/gaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55953926	55953926	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	29	264	1	ENST00000263923.4:c.3511-1G>T		p.X1171_splice	ENST00000263923	NM_002253.2	1171																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130108	143130108	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	56	400	0	ENST00000262992.4:c.908A>T	p.His303Leu	p.H303L	ENST00000262992	NM_001101669.1	303	cAc/cTc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321369	1321369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	73	467	0	ENST00000381566.1:c.386G>T	p.Trp129Leu	p.W129L	ENST00000381566		129	tGg/tTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0040089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	500	602	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1192416464		P-0040089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			75	718	676	0	ENST00000269305.4:c.80del	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023169	27023212	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAAC	GCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAAC	-			P-0040089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			24	66	73	0	ENST00000324856.7:c.283_326del	p.Gly95Ter	p.G95*	ENST00000324856	NM_006015.4	92	gGCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAAC/g																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259419	89259419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1187836345		P-0040089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			783	66	474	0	ENST00000336596.2:c.563C>T	p.Ala188Val	p.A188V	ENST00000336596	NM_005233.5	188	gCt/gTt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525888	148525889	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAT	rs751123994		P-0040089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	267	360	0	ENST00000320356.2:c.566_568dup	p.Asp189dup	p.D189dup	ENST00000320356	NM_004456.4	189	gga/gATGga																																																																														
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	260	1156	1	ENST00000326873.7:c.169del	p.Glu57LysfsTer7	p.E57Kfs*7	ENST00000326873	NM_000455.4	55	ctG/ct																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602746	10602746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	289	1083	0	ENST00000171111.5:c.832C>T	p.Pro278Ser	p.P278S	ENST00000171111	NM_203500.1	278	Ccg/Tcg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95592924	95592924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755944755		P-0040095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	27	327	0	ENST00000343455.3:c.896C>T	p.Ser299Leu	p.S299L	ENST00000343455	NM_177438.2	299	tCg/tTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11301620	11301620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	151	809	0	ENST00000361445.4:c.1531G>C	p.Val511Leu	p.V511L	ENST00000361445	NM_004958.3	511	Gtg/Ctg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153252014	153252014	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	88	390	0	ENST00000281708.4:c.992A>G	p.Asp331Gly	p.D331G	ENST00000281708	NM_033632.3	331	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579718	7579718	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	207	745	0	ENST00000269305.4:c.78del	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	26	ctT/ct																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268479	46268479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	82	419	0	ENST00000371998.3:c.2866G>T	p.Gly956Cys	p.G956C	ENST00000371998		956	Ggc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76849224	76849224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	39	434	2	ENST00000373344.5:c.6052G>A	p.Gly2018Arg	p.G2018R	ENST00000373344	NM_000489.3	2018	Ggg/Agg																																																																														
RFWD2	0	MSKCC	GRCh37	1	175956162	175956162	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	70	383	0	ENST00000367669.3:c.2050A>C	p.Lys684Gln	p.K684Q	ENST00000367669	NM_022457.5	684	Aaa/Caa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425151	49425166	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGTTCCTGGTGCCC	CTGGTTCCTGGTGCCC	-			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	44	979	0	ENST00000301067.7:c.13322_13337del	p.Gly4441AlafsTer73	p.G4441Afs*73	ENST00000301067	NM_003482.3	4441	gGGGCACCAGGAACCAGc/gc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112454	115112454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	134	607	0	ENST00000257566.3:c.1286A>G	p.Asp429Gly	p.D429G	ENST00000257566	NM_016569.3	429	gAc/gGc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001989	29001989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	106	511	0	ENST00000282397.4:c.1176C>G	p.Ile392Met	p.I392M	ENST00000282397	NM_002019.4	392	atC/atG																																																																														
RB1	5925	MSKCC	GRCh37	13	49039196	49039196	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	91	365	0	ENST00000267163.4:c.2275del	p.Val759SerfsTer6	p.V759Sfs*6	ENST00000267163	NM_000321.2	758	tcG/tc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350623	15350623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	262	920	1	ENST00000263377.2:c.3292G>T	p.Ala1098Ser	p.A1098S	ENST00000263377	NM_058243.2	1098	Gct/Tct																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030808	48030808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	39	301	0	ENST00000234420.5:c.3422C>A	p.Ser1141Tyr	p.S1141Y	ENST00000234420	NM_000179.2	1141	tCt/tAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41564735	41564735	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	88	664	0	ENST00000263253.7:c.4036A>T	p.Ser1346Cys	p.S1346C	ENST00000263253	NM_001429.3	1346	Agt/Tgt																																																																														
IRF4	3662	MSKCC	GRCh37	6	401541	401541	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	113	664	0	ENST00000380956.4:c.863A>T	p.Asp288Val	p.D288V	ENST00000380956	NM_001195286.1	288	gAc/gTc																																																																														
PARK2	0	MSKCC	GRCh37	6	161771178	161771178	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	167	737	0	ENST00000366898.1:c.1351T>A	p.Cys451Ser	p.C451S	ENST00000366898	NM_004562.2	451	Tgc/Agc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845831	151845831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	107	729	0	ENST00000262189.6:c.13181C>T	p.Pro4394Leu	p.P4394L	ENST00000262189	NM_170606.2	4394	cCt/cTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70357729	70357729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	52	896	4	ENST00000374080.3:c.5980C>T	p.Arg1994Trp	p.R1994W	ENST00000374080		1994	Cgg/Tgg																																																																														
XIAP	331	MSKCC	GRCh37	X	123019562	123019562	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	61	366	0	ENST00000355640.3:c.50T>A	p.Ile17Asn	p.I17N	ENST00000355640		17	aTc/aAc																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123505207	123505207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	64	223	0	ENST00000371139.4:c.353G>T	p.Arg118Ile	p.R118I	ENST00000371139	NM_001114937.2	118	aGa/aTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	11	533	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	191	1008	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913485		P-0040204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	140	1157	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813307	102813307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764732420		P-0040204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	33	747	1	ENST00000307046.8:c.382G>A	p.Asp128Asn	p.D128N	ENST00000307046	NM_001111285.1	128	Gac/Aac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434354	49434354	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	108	967	1	ENST00000301067.7:c.7199del	p.Pro2400LeufsTer26	p.P2400Lfs*26	ENST00000301067	NM_003482.3	2400	cCt/ct																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5218524	5218524	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1052009018		P-0040204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	92	1135	0	ENST00000357368.4:c.3955C>T	p.Pro1319Ser	p.P1319S	ENST00000357368	NM_002850.3	1319	Ccc/Tcc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818189	32818189	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777683307		P-0040204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	86	933	2	ENST00000354258.4:c.1336G>A	p.Glu446Lys	p.E446K	ENST00000354258	NM_000593.5	446	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	383	363	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PGR	5241	MSKCC	GRCh37	11	100933480	100933480	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766277966		P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	96	183	0	ENST00000325455.5:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000325455	NM_001202474.3	637	cGa/cAa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843533	156843533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	323	896	0	ENST00000524377.1:c.959C>T	p.Ser320Phe	p.S320F	ENST00000524377	NM_002529.3	320	tCc/tTc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444318	50444318	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1427077431		P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	153	333	1	ENST00000331340.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000331340	NM_006060.4	83	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1354824749		P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	341	399	0	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	145	297	2				ENST00000310581	NM_198253.2																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30135385	30135385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	183	398	0	ENST00000331968.5:c.433C>T	p.Arg145Cys	p.R145C	ENST00000331968	NM_002742.2	145	Cgt/Tgt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432368	432368	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1362895739		P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	93	201	0	ENST00000399788.2:c.2155C>T	p.Arg719Cys	p.R719C	ENST00000399788	NM_001042603.1	719	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500816	8500816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	329	475	0	ENST00000356435.5:c.2066C>A	p.Ala689Asp	p.A689D	ENST00000356435		689	gCc/gAc																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439623	51439623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	155	401	0	ENST00000262662.1:c.188C>T	p.Pro63Leu	p.P63L	ENST00000262662		63	cCc/cTc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741919	17741919	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180300708		P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	92	242	1	ENST00000250003.3:c.590C>T	p.Ser197Phe	p.S197F	ENST00000250003	NM_002478.4	197	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857757	9857757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	241	523	0	ENST00000330684.3:c.3644G>T	p.Arg1215Ile	p.R1215I	ENST00000330684	NM_001134407.1	1215	aGa/aTa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78820297	78820297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	702	957	0	ENST00000306801.3:c.1237C>A	p.Leu413Met	p.L413M	ENST00000306801	NM_020761.2	413	Ctg/Atg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436372	52436373	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	307	943	2	ENST00000460680.1:c.2121_2122delinsTT	p.Arg708Trp	p.R708W	ENST00000460680	NM_004656.3	707	ggCCgg/ggTTgg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672006	30672006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	307	807	0	ENST00000376406.3:c.4954C>T	p.Pro1652Ser	p.P1652S	ENST00000376406	NM_014641.2	1652	Cca/Tca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185043	32185043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	249	692	0	ENST00000375023.3:c.1625G>A	p.Gly542Glu	p.G542E	ENST00000375023	NM_004557.3	542	gGa/gAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69143596	69143596	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751488995		P-0040265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	130	289	0	ENST00000288368.4:c.4804C>T	p.Pro1602Ser	p.P1602S	ENST00000288368	NM_024870.2	1602	Cca/Tca																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279500	123279500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	49	530	0	ENST00000358487.5:c.932T>C	p.Val311Ala	p.V311A	ENST00000358487	NM_000141.4	311	gTt/gCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	106	352	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888130	81888130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	93	534	0	ENST00000359376.3:c.275A>C	p.Glu92Ala	p.E92A	ENST00000359376	NM_002661.3	92	gAa/gCa																																																																														
STK11	6794	MSKCC	GRCh37	19	1218500	1218500	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs1131690951		P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	81	440	0	ENST00000326873.7:c.374+1A>G		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610227	10610227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	171	870	0	ENST00000171111.5:c.483G>T	p.Met161Ile	p.M161I	ENST00000171111	NM_203500.1	161	atG/atT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223277	36223277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1391	187	1094	0	ENST00000222270.7:c.5827C>T	p.Pro1943Ser	p.P1943S	ENST00000222270	NM_014727.1	1943	Cct/Tct																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52595839	52595839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	73	492	0	ENST00000394830.3:c.4076G>A	p.Arg1359His	p.R1359H	ENST00000394830	NM_018313.4	1359	cGc/cAc																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72864554	72864554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	16	269	0	ENST00000325599.8:c.883G>T	p.Val295Phe	p.V295F	ENST00000325599	NM_018130.2	295	Gtt/Ttt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520087	106520087	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774448553		P-0040312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	67	192	0	ENST00000359195.3:c.2515C>T	p.Arg839Cys	p.R839C	ENST00000359195	NM_002649.2	839	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	806	289	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59793361	59793361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	51	376	0	ENST00000259008.2:c.2443C>T	p.Gln815Ter	p.Q815*	ENST00000259008	NM_032043.2	815	Cag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66766199	66766199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	40	324	0	ENST00000374690.3:c.1211C>T	p.Ala404Val	p.A404V	ENST00000374690	NM_000044.3	404	gCg/gTg																																																																														
ATM	472	MSKCC	GRCh37	11	108206581	108206581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	102	208	0	ENST00000278616.4:c.8161G>A	p.Asp2721Asn	p.D2721N	ENST00000278616	NM_000051.3	2721	Gac/Aac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984914	9984914	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	93	390	0	ENST00000330684.3:c.1051A>G	p.Thr351Ala	p.T351A	ENST00000330684	NM_001134407.1	351	Act/Gct																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622057	1622057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	175	545	0	ENST00000344749.5:c.818G>T	p.Arg273Leu	p.R273L	ENST00000344749	NM_001136139.2	273	cGt/cTt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1940259	1940259	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	50	233	0	ENST00000382895.3:c.1756G>T	p.Ala586Ser	p.A586S	ENST00000382895	NM_133330.2	586	Gca/Tca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974718	21974725	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCCCC	GCGCCCCC	-			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	119	287	0	ENST00000304494.5:c.102_109del	p.Gly35AlafsTer6	p.G35Afs*6	ENST00000304494	NM_000077.4	34	gcGGGGGCGCtg/gctg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974718	21974725	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCCCC	GCGCCCCC	-			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	119	287	0	ENST00000304494.5:c.102_109del	p.Gly35AlafsTer6	p.G35Afs*6	ENST00000304494	NM_000077.4	34	gcGGGGGCGCtg/gctg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044463	47044463	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	173	464	0	ENST00000329236.7:c.1726G>C	p.Asp576His	p.D576H	ENST00000329236	NM_001204466.1	576	Gac/Cac																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239471	123239471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	102	450	0	ENST00000358487.5:c.2366C>G	p.Ser789Cys	p.S789C	ENST00000358487	NM_000141.4	789	tCt/tGt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350578	15350578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	101	591	0	ENST00000263377.2:c.3337G>C	p.Glu1113Gln	p.E1113Q	ENST00000263377	NM_058243.2	1113	Gag/Cag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945924	17945924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	217	628	1	ENST00000458235.1:c.2015C>T	p.Pro672Leu	p.P672L	ENST00000458235	NM_000215.3	672	cCt/cTt																																																																														
EP300	2033	MSKCC	GRCh37	22	41573851	41573852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	273	592	0	ENST00000263253.7:c.6137dup	p.Ser2047ValfsTer26	p.S2047Vfs*26	ENST00000263253	NM_001429.3	2046	gtg/gTtg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440277	52440277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	68	380	0	ENST00000460680.1:c.775C>G	p.Leu259Val	p.L259V	ENST00000460680	NM_004656.3	259	Ctg/Gtg																																																																														
ATR	545	MSKCC	GRCh37	3	142176548	142176548	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	129	324	0	ENST00000350721.4:c.7553A>G	p.Asn2518Ser	p.N2518S	ENST00000350721	NM_001184.3	2518	aAt/aGt																																																																														
ATR	545	MSKCC	GRCh37	3	142253968	142253968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	139	222	0	ENST00000350721.4:c.3899G>T	p.Arg1300Leu	p.R1300L	ENST00000350721	NM_001184.3	1300	cGt/cTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251909	153251909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	118	297	0	ENST00000281708.4:c.1097G>A	p.Arg366Lys	p.R366K	ENST00000281708	NM_033632.3	366	aGg/aAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8525021	8525021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	84	240	0	ENST00000356435.5:c.583G>C	p.Glu195Gln	p.E195Q	ENST00000356435		195	Gag/Cag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040626	47040626	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	166	395	0	ENST00000329236.7:c.1030del	p.Glu344ArgfsTer63	p.E344Rfs*63	ENST00000329236	NM_001204466.1	343	Ggg/gg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	129	138	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0040411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	9	403	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931614		P-0040411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	19	763	0	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088672	27088672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	191	670	1	ENST00000324856.7:c.2281C>T	p.Gln761Ter	p.Q761*	ENST00000324856	NM_006015.4	761	Cag/Tag																																																																														
TP63	8626	MSKCC	GRCh37	3	189586503	189586503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs143591434		P-0040411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	111	366	1	ENST00000264731.3:c.1127G>A	p.Arg376His	p.R376H	ENST00000264731	NM_003722.4	376	cGc/cAc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12475550	12475550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1479145908		P-0040411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	170	567	1	ENST00000287820.6:c.1424C>T	p.Thr475Met	p.T475M	ENST00000287820	NM_015869.4	475	aCg/aTg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225339003	225339003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	101	425	0	ENST00000264414.4:c.2266C>T	p.Arg756Ter	p.R756*	ENST00000264414	NM_003590.4	756	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296404	15296404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1250956327		P-0040411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	190	801	0	ENST00000263388.2:c.2038C>T	p.Arg680Cys	p.R680C	ENST00000263388	NM_000435.2	680	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	122	631	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	27	430	0	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0040449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	98	363	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962834	2962834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778151		P-0040449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	88	795	2	ENST00000396946.4:c.2074G>A	p.Val692Met	p.V692M	ENST00000396946	NM_032415.4	692	Gtg/Atg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118369241	118369241	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0040449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	65	278	0	ENST00000534358.1:c.5959del	p.Glu1987LysfsTer23	p.E1987Kfs*23	ENST00000534358	NM_005933.3	1987	Gaa/aa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946433	2946433	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775862540		P-0040449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	173	850	1	ENST00000396946.4:c.3304G>A	p.Val1102Met	p.V1102M	ENST00000396946	NM_032415.4	1102	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0040488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	272	958	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																														
ID3	3399	MSKCC	GRCh37	1	23885832	23885832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	240	544	0	ENST00000374561.5:c.86G>A	p.Gly29Glu	p.G29E	ENST00000374561	NM_002167.4	29	gGg/gAg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741360	17741360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781508900		P-0040488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	135	925	0	ENST00000250003.3:c.31G>A	p.Val11Ile	p.V11I	ENST00000250003	NM_002478.4	11	Gta/Ata																																																																														
MTOR	2475	MSKCC	GRCh37	1	11303178	11303178	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763879621		P-0040488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	110	658	2	ENST00000361445.4:c.1405G>A	p.Ala469Thr	p.A469T	ENST00000361445	NM_004958.3	469	Gcc/Acc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11193228	11193228	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	159	639	0	ENST00000361445.4:c.5273A>C	p.Gln1758Pro	p.Q1758P	ENST00000361445	NM_004958.3	1758	cAg/cCg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910840	114910840	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	111	603	0	ENST00000543371.1:c.959A>G	p.Lys320Arg	p.K320R	ENST00000543371	NM_001198531.1	320	aAa/aGa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239519	123239610	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGAGGTCCAAGTATTCCTGAAAGAAGGGAAGAGAGACGTTTTATTTCATCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGA	CTGAGGTCCAAGTATTCCTGAAAGAAGGGAAGAGAGACGTTTTATTTCATCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGA	-			P-0040488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	101	943	0	ENST00000358487.5:c.2302-75_2318del		p.X768_splice	ENST00000358487	NM_000141.4	768																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230372	46230372	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0040488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	80	323	0	ENST00000334344.6:c.706T>C	p.Phe236Leu	p.F236L	ENST00000334344	NM_152641.2	236	Ttt/Ctt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980914	40980914	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	268	440	0	ENST00000373198.4:c.1572G>T	p.Lys524Asn	p.K524N	ENST00000373198	NM_133170.3	524	aaG/aaT																																																																														
ARAF	369	MSKCC	GRCh37	X	47424421	47424422	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AA			P-0040488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	142	790	0	ENST00000377045.4:c.341_342delinsAA	p.Phe114Ter	p.F114*	ENST00000377045	NM_001654.4	114	tTC/tAA																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114724375	114724375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	55	305	0	ENST00000543371.1:c.442G>A	p.Ala148Thr	p.A148T	ENST00000543371	NM_001198531.1	148	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	102	496	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	44	267	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660099	227660099	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs774812399		P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	86	503	0	ENST00000305123.5:c.3356T>C	p.Phe1119Ser	p.F1119S	ENST00000305123	NM_005544.2	1119	tTt/tCt																																																																														
EP300	2033	MSKCC	GRCh37	22	41565507	41565508	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	20	209	0	ENST00000263253.7:c.4176_4177del	p.Arg1392SerfsTer8	p.R1392Sfs*8	ENST00000263253	NM_001429.3	1391	agGAga/agga																																																																														
VHL	7428	MSKCC	GRCh37	3	10188232	10188232	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	47	481	0	ENST00000256474.2:c.375C>G	p.His125Gln	p.H125Q	ENST00000256474	NM_000551.3	125	caC/caG																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801524	1801524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	102	666	0	ENST00000260795.2:c.430A>G	p.Thr144Ala	p.T144A	ENST00000260795		144	Aca/Gca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912750	32912750	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28897727		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	201	347	0	ENST00000380152.3:c.4258G>T	p.Asp1420Tyr	p.D1420Y	ENST00000380152		1420	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	454	637	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462371	89462371	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866025221		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	394	560	0	ENST00000336596.2:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000336596	NM_005233.5	615	Gaa/Aaa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47684731	47684731	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	238	351	2	ENST00000347630.2:c.718C>T	p.Arg240Ter	p.R240*	ENST00000347630	NM_001007230.1	240	Cga/Tga																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479811	67479811	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500766		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	314	590	0	ENST00000327367.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000327367	NM_005902.3	373	cGc/cAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459239	120459239	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	283	518	0	ENST00000256646.2:c.6106C>T	p.Arg2036Ter	p.R2036*	ENST00000256646	NM_024408.3	2036	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	448	643	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231707	66231707	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1211795184		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	373	380	1	ENST00000273854.3:c.1993G>A	p.Glu665Lys	p.E665K	ENST00000273854	NM_004439.5	665	Gaa/Aaa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777640	9777640	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148703447		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	582	659	0	ENST00000377346.4:c.976G>A	p.Glu326Lys	p.E326K	ENST00000377346	NM_005026.3	326	Gag/Aag																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1451809865		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	162	331	1	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793710	89793710	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	371	353	0	ENST00000336032.3:c.779A>C	p.Lys260Thr	p.K260T	ENST00000336032	NM_006813.2	260	aAa/aCa																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519943		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	626	522	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779302415		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	421	630	0	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80359104		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	150	311	1	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155627	56155627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768025328		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	268	349	0	ENST00000399503.3:c.719C>T	p.Ala240Val	p.A240V	ENST00000399503	NM_005921.1	240	gCg/gTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1424958105		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	237	360	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	48881438	48881438	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	109	153	0	ENST00000267163.4:c.160G>T	p.Glu54Ter	p.E54*	ENST00000267163	NM_000321.2	54	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	156	365	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119631622	119631622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	194	332	0	ENST00000316626.5:c.644C>T	p.Ser215Leu	p.S215L	ENST00000316626		215	tCg/tTg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143029297	143029297	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757219824		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	121	267	0	ENST00000262992.4:c.2323G>A	p.Glu775Lys	p.E775K	ENST00000262992	NM_001101669.1	775	Gaa/Aaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25991736	25991736	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs530632623		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	85	311	1	ENST00000435504.4:c.506C>T	p.Ala169Val	p.A169V	ENST00000435504		169	gCg/gTg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849852	156849852	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	405	636	0	ENST00000524377.1:c.2108A>C	p.Lys703Thr	p.K703T	ENST00000524377	NM_002529.3	703	aAg/aCg																																																																														
MPL	4352	MSKCC	GRCh37	1	43805719	43805719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528834914		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	496	567	0	ENST00000372470.3:c.775G>A	p.Glu259Lys	p.E259K	ENST00000372470	NM_005373.2	259	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267600319		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	44	369	1	ENST00000257430.4:c.4199C>T	p.Ser1400Leu	p.S1400L	ENST00000257430	NM_000038.5	1400	tCg/tTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066627	94066627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	309	473	0	ENST00000369303.4:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000369303	NM_004440.3	378	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202457		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	247	340	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142176561	142176561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	308	452	0	ENST00000350721.4:c.7540C>T	p.Arg2514Cys	p.R2514C	ENST00000350721	NM_001184.3	2514	Cgc/Tgc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2951852	2951852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770667388		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	404	712	1	ENST00000396946.4:c.3098C>T	p.Ala1033Val	p.A1033V	ENST00000396946	NM_032415.4	1033	gCg/gTg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266512	198266512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	160	347	0	ENST00000335508.6:c.2324G>A	p.Arg775Gln	p.R775Q	ENST00000335508	NM_012433.2	775	cGa/cAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041074	42041074	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	486	570	0	ENST00000219905.7:c.5452C>T	p.Arg1818Ter	p.R1818*	ENST00000219905	NM_001164273.1	1818	Cga/Tga																																																																														
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339962485		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	290	480	1	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199604489		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	436	659	1	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs63751411		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	140	274	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	208	274	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
YES1	7525	MSKCC	GRCh37	18	751726	751726	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1010928891		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	153	329	0	ENST00000314574.4:c.350G>T	p.Arg117Ile	p.R117I	ENST00000314574	NM_005433.3	117	aGa/aTa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	188	264	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108203493	108203493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140263969		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	107	193	0	ENST00000278616.4:c.7793G>A	p.Arg2598Gln	p.R2598Q	ENST00000278616	NM_000051.3	2598	cGa/cAa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17951085	17951085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	613	602	0	ENST00000458235.1:c.1208G>A	p.Arg403His	p.R403H	ENST00000458235	NM_000215.3	403	cGc/cAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162904	47162904	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs757432733		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	227	413	0	ENST00000409792.3:c.3222G>T	p.Lys1074Asn	p.K1074N	ENST00000409792	NM_014159.6	1074	aaG/aaT																																																																														
ATR	545	MSKCC	GRCh37	3	142238542	142238542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148064542		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	166	238	0	ENST00000350721.4:c.4351C>T	p.Arg1451Trp	p.R1451W	ENST00000350721	NM_001184.3	1451	Cgg/Tgg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461575	138461575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1225812682		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	202	406	1	ENST00000289153.2:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000289153	NM_006219.2	149	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645512	67645512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	130	215	0	ENST00000264010.4:c.777G>T	p.Lys259Asn	p.K259N	ENST00000264010	NM_006565.3	259	aaG/aaT																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669547	88669547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56394626		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	232	523	0	ENST00000360948.2:c.1351G>A	p.Val451Ile	p.V451I	ENST00000360948	NM_001012338.2	451	Gtc/Atc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332415	70332415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1419371452		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	739	614	0	ENST00000373644.4:c.320G>A	p.Arg107Gln	p.R107Q	ENST00000373644	NM_030625.2	107	cGa/cAa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120496243	120496243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782306821		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	284	451	0	ENST00000256646.2:c.2288C>T	p.Ser763Leu	p.S763L	ENST00000256646	NM_024408.3	763	tCg/tTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76938406	76938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	277	246	0	ENST00000373344.5:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000373344	NM_000489.3	781	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs864622251		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	224	423	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925397	114925397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773530340		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	362	701	0	ENST00000543371.1:c.1475C>T	p.Ser492Leu	p.S492L	ENST00000543371	NM_001198531.1	492	tCg/tTg																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480542	50480542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs559383300		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	362	434	0	ENST00000394963.4:c.412C>T	p.Arg138Cys	p.R138C	ENST00000394963	NM_003076.4	138	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518086	187518086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200185840		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	327	528	0	ENST00000441802.2:c.12608G>A	p.Arg4203His	p.R4203H	ENST00000441802	NM_005245.3	4203	cGt/cAt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103506670	103506670	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1372959301		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	124	253	0	ENST00000355739.4:c.413G>A	p.Arg138Gln	p.R138Q	ENST00000355739	NM_000123.3	138	cGa/cAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	125	228	1	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319853	8319853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	46	366	0	ENST00000356435.5:c.5648G>A	p.Arg1883Gln	p.R1883Q	ENST00000356435		1883	cGa/cAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459558	50459558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	130	283	0	ENST00000331340.3:c.847C>A	p.Leu283Ile	p.L283I	ENST00000331340	NM_006060.4	283	Ctt/Att																																																																														
EZH2	2146	MSKCC	GRCh37	7	148543633	148543633	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	285	414	0	ENST00000320356.2:c.175G>T	p.Glu59Ter	p.E59*	ENST00000320356	NM_004456.4	59	Gaa/Taa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30686299	30686299	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs767191783		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	225	374	0	ENST00000359013.4:c.230A>C	p.Lys77Thr	p.K77T	ENST00000359013	NM_001024847.2	77	aAa/aCa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408894	41408894	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1420220673		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	266	468	0	ENST00000373198.4:c.532G>A	p.Ala178Thr	p.A178T	ENST00000373198	NM_133170.3	178	Gcc/Acc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683508	182683508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	133	402	0	ENST00000292782.4:c.37C>T	p.Arg13Cys	p.R13C	ENST00000292782	NM_020640.2	13	Cgt/Tgt																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137527278	137527278	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146914620		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	275	446	0	ENST00000367739.4:c.368G>A	p.Arg123Gln	p.R123Q	ENST00000367739	NM_000416.2	123	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142242849	142242849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	240	421	0	ENST00000350721.4:c.4138G>T	p.Asp1380Tyr	p.D1380Y	ENST00000350721	NM_001184.3	1380	Gat/Tat																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910556	29910556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	364	261	0	ENST00000376809.5:c.96C>A	p.Phe32Leu	p.F32L	ENST00000376809	NM_002116.7	32	ttC/ttA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715350	117715350	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1466068877		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	210	298	0	ENST00000368508.3:c.1139G>T	p.Arg380Ile	p.R380I	ENST00000368508	NM_002944.2	380	aGa/aTa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504585	103504585	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747957305		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	201	326	0	ENST00000355739.4:c.206G>A	p.Arg69Gln	p.R69Q	ENST00000355739	NM_000123.3	69	cGa/cAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969087	93969087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1270476760		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	149	240	0	ENST00000369303.4:c.1909C>T	p.Arg637Cys	p.R637C	ENST00000369303	NM_004440.3	637	Cgt/Tgt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463578	25463578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770938712		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	599	588	1	ENST00000264709.3:c.2104G>A	p.Asp702Asn	p.D702N	ENST00000264709	NM_175629.2	702	Gat/Aat																																																																														
NF1	4763	MSKCC	GRCh37	17	29661976	29661976	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	43	428	0	ENST00000358273.4:c.5933T>G	p.Leu1978Arg	p.L1978R	ENST00000358273	NM_001042492.2	1978	cTg/cGg																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2636803	2636803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	422	694	0	ENST00000342085.4:c.1252G>A	p.Asp418Asn	p.D418N	ENST00000342085	NM_002613.4	418	Gat/Aat																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250095	39250095	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	333	502	0	ENST00000402219.2:c.1474G>T	p.Glu492Ter	p.E492*	ENST00000402219	NM_005633.3	492	Gaa/Taa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148544272	148544272	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	237	290	0	ENST00000320356.2:c.117+2T>C		p.X39_splice	ENST00000320356	NM_004456.4	39																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184568	11184568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	316	534	0	ENST00000361445.4:c.6649C>T	p.Arg2217Trp	p.R2217W	ENST00000361445	NM_004958.3	2217	Cgg/Tgg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162868	38162868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201879366		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	303	597	0	ENST00000317025.8:c.2338C>T	p.Arg780Cys	p.R780C	ENST00000317025	NM_023034.1	780	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319934	8319934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764537367		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	160	305	0	ENST00000356435.5:c.5567C>T	p.Thr1856Met	p.T1856M	ENST00000356435		1856	aCg/aTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42003374	42003374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372252914		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	289	498	2	ENST00000219905.7:c.2911C>T	p.Arg971Trp	p.R971W	ENST00000219905	NM_001164273.1	971	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420460	49420460	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	121	641	2	ENST00000301067.7:c.15289C>T	p.Arg5097Ter	p.R5097*	ENST00000301067	NM_003482.3	5097	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108123575	108123575	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs747242300		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	178	290	0	ENST00000278616.4:c.1834C>A	p.Leu612Ile	p.L612I	ENST00000278616	NM_000051.3	612	Ctt/Att																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805785	32805785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	685	739	0	ENST00000374899.4:c.226A>G	p.Thr76Ala	p.T76A	ENST00000374899	NM_018833.2	76	Act/Gct																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115266570	115266570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	380	553	4	ENST00000438362.2:c.1945C>T	p.Arg649Cys	p.R649C	ENST00000438362	NM_001242891.1	649	Cgc/Tgc																																																																														
CDC42	998	MSKCC	GRCh37	1	22405051	22405051	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	165	209	0	ENST00000344548.3:c.80A>C	p.Lys27Thr	p.K27T	ENST00000344548	NM_001039802.1	27	aAa/aCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836804	151836804	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	293	451	1	ENST00000262189.6:c.14416C>T	p.Arg4806Ter	p.R4806*	ENST00000262189	NM_170606.2	4806	Cga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38962629	38962629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	51	342	0	ENST00000357387.3:c.1626G>T	p.Glu542Asp	p.E542D	ENST00000357387	NM_152756.3	542	gaG/gaT																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859879	117859879	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	166	224	0	ENST00000297338.2:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000297338	NM_006265.2	586	Cga/Tga																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640169	3640169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769688259		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	612	807	2	ENST00000294008.3:c.3470C>T	p.Ser1157Leu	p.S1157L	ENST00000294008	NM_032444.2	1157	tCg/tTg																																																																														
NBN	4683	MSKCC	GRCh37	8	90976694	90976694	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881862		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	222	403	2	ENST00000265433.3:c.938C>T	p.Ala313Val	p.A313V	ENST00000265433	NM_002485.4	313	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557804	187557804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321370436		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	279	462	0	ENST00000441802.2:c.3907G>A	p.Glu1303Lys	p.E1303K	ENST00000441802	NM_005245.3	1303	Gaa/Aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	49047524	49047524	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs374157786		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	84	225	0	ENST00000267163.4:c.2518G>A	p.Gly840Arg	p.G840R	ENST00000267163	NM_000321.2	840	Ggg/Agg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500768	8500768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757479150		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	214	378	0	ENST00000356435.5:c.2114G>A	p.Arg705Gln	p.R705Q	ENST00000356435		705	cGa/cAa																																																																														
PARK2	0	MSKCC	GRCh37	6	162394436	162394436	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	199	327	0	ENST00000366898.1:c.632A>C	p.Lys211Thr	p.K211T	ENST00000366898	NM_004562.2	211	aAa/aCa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497533	125497533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	239	271	0	ENST00000428830.2:c.97G>A	p.Glu33Lys	p.E33K	ENST00000428830	NM_001114121.2	33	Gaa/Aaa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227955	53227955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	388	326	0	ENST00000375401.3:c.2359C>T	p.Arg787Trp	p.R787W	ENST00000375401	NM_004187.3	787	Cgg/Tgg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468319	50468319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	238	488	0	ENST00000331340.3:c.1554G>A	p.Met518Ile	p.M518I	ENST00000331340	NM_006060.4	518	atG/atA																																																																														
EP300	2033	MSKCC	GRCh37	22	41533773	41533773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	259	451	1	ENST00000263253.7:c.1739G>A	p.Arg580Gln	p.R580Q	ENST00000263253	NM_001429.3	580	cGa/cAa																																																																														
BARD1	580	MSKCC	GRCh37	2	215595215	215595215	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587781948		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	154	259	1	ENST00000260947.4:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000260947	NM_000465.2	641	Cga/Tga																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2185896	2185896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	405	531	0	ENST00000398665.3:c.168G>T	p.Glu56Asp	p.E56D	ENST00000398665	NM_032482.2	56	gaG/gaT																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859583	57859583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	457	515	0	ENST00000228682.2:c.637G>A	p.Gly213Arg	p.G213R	ENST00000228682	NM_005269.2	213	Ggg/Agg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030813	69030813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778089198		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	172	314	0	ENST00000288368.4:c.3355G>A	p.Ala1119Thr	p.A1119T	ENST00000288368	NM_024870.2	1119	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152055755	152055755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1403418496		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	245	377	0	ENST00000262189.6:c.167G>A	p.Arg56Gln	p.R56Q	ENST00000262189	NM_170606.2	56	cGa/cAa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742933	17742933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	410	597	0	ENST00000250003.3:c.841C>T	p.Arg281Cys	p.R281C	ENST00000250003	NM_002478.4	281	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218350	36218350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1454713201		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	398	755	0	ENST00000222270.7:c.4129G>A	p.Glu1377Lys	p.E1377K	ENST00000222270	NM_014727.1	1377	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69012038	69012038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	230	458	0	ENST00000288368.4:c.2675G>T	p.Arg892Ile	p.R892I	ENST00000288368	NM_024870.2	892	aGa/aTa																																																																														
FANCC	2176	MSKCC	GRCh37	9	98003008	98003008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	38	273	0	ENST00000289081.3:c.268C>A	p.Leu90Ile	p.L90I	ENST00000289081	NM_000136.2	90	Cta/Ata																																																																														
MTOR	2475	MSKCC	GRCh37	1	11205036	11205036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	307	565	0	ENST00000361445.4:c.4753C>T	p.Arg1585Trp	p.R1585W	ENST00000361445	NM_004958.3	1585	Cgg/Tgg																																																																														
TEK	7010	MSKCC	GRCh37	9	27173241	27173241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	320	641	0	ENST00000380036.4:c.782G>A	p.Gly261Asp	p.G261D	ENST00000380036	NM_000459.3	261	gGc/gAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950493	68950493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760821149		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	173	345	0	ENST00000288368.4:c.805G>A	p.Asp269Asn	p.D269N	ENST00000288368	NM_024870.2	269	Gat/Aat																																																																														
NUF2	83540	MSKCC	GRCh37	1	163295896	163295896	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748878165		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	326	515	2	ENST00000271452.3:c.55C>T	p.Arg19Cys	p.R19C	ENST00000271452	NM_145697.2	19	Cgc/Tgc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30956904	30956904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	305	462	0	ENST00000375687.4:c.230G>A	p.Arg77Gln	p.R77Q	ENST00000375687	NM_015338.5	77	cGa/cAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242692	16242692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	346	523	0	ENST00000375759.3:c.1313G>T	p.Arg438Ile	p.R438I	ENST00000375759	NM_015001.2	438	aGa/aTa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277233	41277233	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	175	319	0	ENST00000349496.5:c.1702G>T	p.Glu568Ter	p.E568*	ENST00000349496	NM_001904.3	568	Gaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710875	117710875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140178288		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	255	389	1	ENST00000368508.3:c.1397G>A	p.Arg466Gln	p.R466Q	ENST00000368508	NM_002944.2	466	cGa/cAa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713877	30713877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	273	576	0	ENST00000359013.4:c.1277C>T	p.Ser426Phe	p.S426F	ENST00000359013	NM_001024847.2	426	tCc/tTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608510	28608510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	371	540	0	ENST00000241453.7:c.1632C>A	p.Phe544Leu	p.F544L	ENST00000241453	NM_004119.2	544	ttC/ttA																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646423	23646423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	372	493	0	ENST00000261584.4:c.1444C>A	p.Leu482Ile	p.L482I	ENST00000261584	NM_024675.3	482	Ctc/Atc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281838	39281838	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	232	406	0	ENST00000402219.2:c.637C>T	p.Arg213Ter	p.R213*	ENST00000402219	NM_005633.3	213	Cga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55956198	55956198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	246	484	0	ENST00000263923.4:c.3117G>T	p.Lys1039Asn	p.K1039N	ENST00000263923	NM_002253.2	1039	aaG/aaT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120882	94120882	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	258	336	0	ENST00000369303.4:c.169G>T	p.Glu57Ter	p.E57*	ENST00000369303	NM_004440.3	57	Gaa/Taa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38944618	38944618	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	212	384	0	ENST00000357387.3:c.4843G>T	p.Glu1615Ter	p.E1615*	ENST00000357387	NM_152756.3	1615	Gaa/Taa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785686	50785686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763792744		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	320	509	0	ENST00000398568.2:c.676G>A	p.Glu226Lys	p.E226K	ENST00000398568	NM_001042412.1	226	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76849193	76849193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	184	168	0	ENST00000373344.5:c.6083G>A	p.Arg2028Gln	p.R2028Q	ENST00000373344	NM_000489.3	2028	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645132	67645132	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	409	615	1	ENST00000264010.4:c.397G>T	p.Glu133Ter	p.E133*	ENST00000264010	NM_006565.3	133	Gaa/Taa																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271393	26271393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	537	490	0	ENST00000305910.3:c.220G>T	p.Glu74Ter	p.E74*	ENST00000305910	NM_003534.2	74	Gaa/Taa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252720	10252720	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377078524		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	385	616	1	ENST00000340748.4:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000340748		1082	cGc/cAc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59926543	59926543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	292	487	0	ENST00000259008.2:c.454G>T	p.Asp152Tyr	p.D152Y	ENST00000259008	NM_032043.2	152	Gat/Tat																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161690	56161690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	291	424	0	ENST00000399503.3:c.1187G>A	p.Arg396His	p.R396H	ENST00000399503	NM_005921.1	396	cGt/cAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701248	43701248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773338141		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	280	530	0	ENST00000382044.4:c.5447G>A	p.Arg1816Gln	p.R1816Q	ENST00000382044	NM_001141980.1	1816	cGa/cAa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500473	149500473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1292468244		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	352	561	0	ENST00000261799.4:c.2564C>T	p.Ser855Leu	p.S855L	ENST00000261799	NM_002609.3	855	tCg/tTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630228	187630228	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	446	559	0	ENST00000441802.2:c.754G>T	p.Glu252Ter	p.E252*	ENST00000441802	NM_005245.3	252	Gaa/Taa																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992157	11992157	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	290	457	1	ENST00000396373.4:c.247G>T	p.Asp83Tyr	p.D83Y	ENST00000396373	NM_001987.4	83	Gac/Tac																																																																														
TET2	54790	MSKCC	GRCh37	4	106164059	106164059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	158	300	0	ENST00000380013.4:c.3569C>A	p.Ser1190Tyr	p.S1190Y	ENST00000380013	NM_001127208.2	1190	tCt/tAt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646974	23646974	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	428	630	0	ENST00000261584.4:c.893T>C	p.Val298Ala	p.V298A	ENST00000261584	NM_024675.3	298	gTc/gCc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560464	95560464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	272	494	0	ENST00000343455.3:c.5125G>T	p.Asp1709Tyr	p.D1709Y	ENST00000343455	NM_177438.2	1709	Gat/Tat																																																																														
CDC42	998	MSKCC	GRCh37	1	22417976	22417976	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	63	56	0	ENST00000344548.3:c.542A>C	p.Glu181Ala	p.E181A	ENST00000344548	NM_001039802.1	181	gAa/gCa																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39321394	39321394	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	312	427	0	ENST00000373001.3:c.627A>C	p.Glu209Asp	p.E209D	ENST00000373001	NM_022157.3	209	gaA/gaC																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058632	72058632	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	198	304	1	ENST00000357731.5:c.808G>T	p.Gly270Ter	p.G270*	ENST00000357731	NM_173808.2	270	Gga/Tga																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78425913	78425913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	243	366	0	ENST00000370768.2:c.1532G>A	p.Gly511Glu	p.G511E	ENST00000370768	NM_003902.3	511	gGa/gAa																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736515	85736515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	199	261	0	ENST00000370580.1:c.132A>C	p.Lys44Asn	p.K44N	ENST00000370580	NM_003921.4	44	aaA/aaC																																																																														
NUF2	83540	MSKCC	GRCh37	1	163297308	163297308	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs991658524		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	240	438	0	ENST00000271452.3:c.154G>A	p.Ala52Thr	p.A52T	ENST00000271452	NM_145697.2	52	Gcc/Acc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176015392	176015392	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	261	366	0	ENST00000367669.3:c.1346A>C	p.Glu449Ala	p.E449A	ENST00000367669	NM_022457.5	449	gAa/gCa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193107275	193107275	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	148	293	0	ENST00000367435.3:c.484G>T	p.Glu162Ter	p.E162*	ENST00000367435	NM_024529.4	162	Gaa/Taa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984360	201984360	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	662	598	0	ENST00000359651.3:c.1025T>G	p.Leu342Arg	p.L342R	ENST00000359651		342	cTg/cGg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243727112	243727112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	318	417	0	ENST00000263826.5:c.858A>C	p.Lys286Asn	p.K286N	ENST00000263826	NM_005465.4	286	aaA/aaC																																																																														
AKT3	10000	MSKCC	GRCh37	1	243858936	243858936	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	191	430	0	ENST00000263826.5:c.129A>C	p.Gln43His	p.Q43H	ENST00000263826	NM_005465.4	43	caA/caC																																																																														
RET	5979	MSKCC	GRCh37	10	43597981	43597981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765654609		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	549	696	1	ENST00000355710.3:c.529C>T	p.Arg177Trp	p.R177W	ENST00000355710	NM_020975.4	177	Cgg/Tgg																																																																														
RET	5979	MSKCC	GRCh37	10	43617459	43617459	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	260	403	0	ENST00000355710.3:c.2796T>G	p.Ser932Arg	p.S932R	ENST00000355710	NM_020975.4	932	agT/agG																																																																														
TET1	80312	MSKCC	GRCh37	10	70404567	70404567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	333	491	0	ENST00000373644.4:c.2081A>C	p.Asn694Thr	p.N694T	ENST00000373644	NM_030625.2	694	aAt/aCt																																																																														
TET1	80312	MSKCC	GRCh37	10	70432777	70432777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	236	414	0	ENST00000373644.4:c.4799G>T	p.Arg1600Ile	p.R1600I	ENST00000373644	NM_030625.2	1600	aGa/aTa																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771388	112771388	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	295	450	0	ENST00000369452.4:c.1561G>T	p.Glu521Ter	p.E521*	ENST00000369452	NM_007373.3	521	Gaa/Taa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258062	123258062	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	246	474	0	ENST00000358487.5:c.1619T>C	p.Met540Thr	p.M540T	ENST00000358487	NM_000141.4	540	aTg/aCg																																																																														
SESN3	143686	MSKCC	GRCh37	11	94922994	94922994	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	256	452	0	ENST00000536441.1:c.474T>G	p.Ile158Met	p.I158M	ENST00000536441	NM_144665.3	158	atT/atG																																																																														
PGR	5241	MSKCC	GRCh37	11	100912696	100912696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	229	399	0	ENST00000325455.5:c.2626C>T	p.Leu876Phe	p.L876F	ENST00000325455	NM_001202474.3	876	Ctt/Ttt																																																																														
PGR	5241	MSKCC	GRCh37	11	100998706	100998706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	501	676	1	ENST00000325455.5:c.1096G>A	p.Asp366Asn	p.D366N	ENST00000325455	NM_001202474.3	366	Gac/Aac																																																																														
ATM	472	MSKCC	GRCh37	11	108114799	108114799	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587781829		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	267	439	0	ENST00000278616.4:c.616A>C	p.Asn206His	p.N206H	ENST00000278616	NM_000051.3	206	Aat/Cat																																																																														
ATM	472	MSKCC	GRCh37	11	108129776	108129776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	187	332	0	ENST00000278616.4:c.2440G>T	p.Asp814Tyr	p.D814Y	ENST00000278616	NM_000051.3	814	Gac/Tac																																																																														
ATM	472	MSKCC	GRCh37	11	108153558	108153558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	105	279	0	ENST00000278616.4:c.3698C>A	p.Ser1233Tyr	p.S1233Y	ENST00000278616	NM_000051.3	1233	tCt/tAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118339523	118339523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	253	435	0	ENST00000534358.1:c.466G>A	p.Glu156Lys	p.E156K	ENST00000534358	NM_005933.3	156	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118347664	118347664	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886041856		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	269	436	0	ENST00000534358.1:c.3301C>T	p.Arg1101Ter	p.R1101*	ENST00000534358	NM_005933.3	1101	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348904	118348904	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	104	229	0	ENST00000534358.1:c.3557A>T	p.Lys1186Met	p.K1186M	ENST00000534358	NM_005933.3	1186	aAg/aTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118382708	118382708	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	223	388	0	ENST00000534358.1:c.11114C>A	p.Ser3705Ter	p.S3705*	ENST00000534358	NM_005933.3	3705	tCa/tAa																																																																														
CBL	867	MSKCC	GRCh37	11	119145651	119145651	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	202	257	0	ENST00000264033.4:c.857A>G	p.His286Arg	p.H286R	ENST00000264033	NM_005188.3	286	cAc/cGc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	493228	493228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	280	372	0	ENST00000399788.2:c.335G>T	p.Arg112Ile	p.R112I	ENST00000399788	NM_001042603.1	112	aGa/aTa																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992218	11992218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs575376112		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	226	410	0	ENST00000396373.4:c.308G>A	p.Arg103His	p.R103H	ENST00000396373	NM_001987.4	103	cGc/cAc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871770	12871770	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	283	221	1	ENST00000228872.4:c.487C>T	p.Gln163Ter	p.Q163*	ENST00000228872	NM_004064.3	163	Caa/Taa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21630853	21630853	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	276	499	0	ENST00000421138.2:c.751A>C	p.Ile251Leu	p.I251L	ENST00000421138		251	Att/Ctt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644528	21644528	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	231	464	0	ENST00000421138.2:c.139A>T	p.Lys47Ter	p.K47*	ENST00000421138		47	Aag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398249	25398249	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	313	421	0	ENST00000256078.4:c.70A>C	p.Ile24Leu	p.I24L	ENST00000256078	NM_033360.2	24	Att/Ctt																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145010	58145010	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	504	519	0	ENST00000257904.6:c.334T>G	p.Leu112Val	p.L112V	ENST00000257904	NM_000075.3	112	Ttg/Gtg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416782	121416782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1447883891		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	1131	791	0	ENST00000257555.6:c.211G>A	p.Glu71Lys	p.E71K	ENST00000257555		71	Gag/Aag																																																																														
SETD8	0	MSKCC	GRCh37	12	123888133	123888133	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	131	235	0	ENST00000330479.4:c.611A>C	p.Lys204Thr	p.K204T	ENST00000330479	NM_020382.3	204	aAa/aCa																																																																														
POLE	5426	MSKCC	GRCh37	12	133202824	133202824	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	459	608	0	ENST00000320574.5:c.6410A>C	p.Glu2137Ala	p.E2137A	ENST00000320574	NM_006231.2	2137	gAg/gCg																																																																														
POLE	5426	MSKCC	GRCh37	12	133256608	133256608	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs879254235		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	283	467	1	ENST00000320574.5:c.355T>A	p.Phe119Ile	p.F119I	ENST00000320574	NM_006231.2	119	Ttt/Att																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609759	28609759	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	432	543	0	ENST00000241453.7:c.1470A>C	p.Lys490Asn	p.K490N	ENST00000241453	NM_004119.2	490	aaA/aaC																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631513	28631513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	193	350	0	ENST00000241453.7:c.455A>G	p.Tyr152Cys	p.Y152C	ENST00000241453	NM_004119.2	152	tAc/tGc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28882990	28882990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	367	498	0	ENST00000282397.4:c.3710C>T	p.Ser1237Phe	p.S1237F	ENST00000282397	NM_002019.4	1237	tCc/tTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28919676	28919676	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	227	406	0	ENST00000282397.4:c.2261A>C	p.Lys754Thr	p.K754T	ENST00000282397	NM_002019.4	754	aAg/aCg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001313	29001313	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	210	309	0	ENST00000282397.4:c.1419T>G	p.His473Gln	p.H473Q	ENST00000282397	NM_002019.4	473	caT/caG																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008297	29008297	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	197	325	0	ENST00000282397.4:c.574T>G	p.Phe192Val	p.F192V	ENST00000282397	NM_002019.4	192	Ttc/Gtc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913277	32913277	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1060502499		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	91	463	0	ENST00000380152.3:c.4785G>T	p.Gln1595His	p.Q1595H	ENST00000380152		1595	caG/caT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913367	32913367	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	236	429	0	ENST00000380152.3:c.4875A>C	p.Glu1625Asp	p.E1625D	ENST00000380152		1625	gaA/gaC																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915064	32915064	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	247	441	0	ENST00000380152.3:c.6572A>C	p.Lys2191Thr	p.K2191T	ENST00000380152		2191	aAa/aCa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972896	32972896	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	167	234	0	ENST00000380152.3:c.10246A>C	p.Lys3416Gln	p.K3416Q	ENST00000380152		3416	Aaa/Caa																																																																														
RB1	5925	MSKCC	GRCh37	13	49027133	49027133	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	192	309	0	ENST00000267163.4:c.1700C>A	p.Ser567Ter	p.S567*	ENST00000267163	NM_000321.2	567	tCa/tAa																																																																														
RB1	5925	MSKCC	GRCh37	13	49050898	49050898	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	285	408	0	ENST00000267163.4:c.2582G>T	p.Arg861Ile	p.R861I	ENST00000267163	NM_000321.2	861	aGa/aTa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73334743	73334743	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	119	246	0	ENST00000377767.4:c.2717A>C	p.Lys906Thr	p.K906T	ENST00000377767	NM_014953.3	906	aAa/aCa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068255	30068255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	227	384	0	ENST00000331968.5:c.2144C>T	p.Ala715Val	p.A715V	ENST00000331968	NM_002742.2	715	gCc/gTc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108018	30108018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	374	563	0	ENST00000331968.5:c.789G>T	p.Leu263Phe	p.L263F	ENST00000331968	NM_002742.2	263	ttG/ttT																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609756	81609756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	262	448	0	ENST00000298171.2:c.1354C>A	p.Leu452Ile	p.L452I	ENST00000298171	NM_000369.2	452	Ctc/Atc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43705404	43705404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	81	745	0	ENST00000382044.4:c.5218C>A	p.Leu1740Ile	p.L1740I	ENST00000382044	NM_001141980.1	1740	Ctc/Atc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43766907	43766907	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765177854		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	147	295	0	ENST00000382044.4:c.1144G>A	p.Val382Ile	p.V382I	ENST00000382044	NM_001141980.1	382	Gtt/Att																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43769884	43769884	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	63	473	1	ENST00000382044.4:c.862G>T	p.Glu288Ter	p.E288*	ENST00000382044	NM_001141980.1	288	Gaa/Taa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67459118	67459118	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	376	664	0	ENST00000327367.4:c.534G>T	p.Glu178Asp	p.E178D	ENST00000327367	NM_005902.3	178	gaG/gaT																																																																														
BLM	641	MSKCC	GRCh37	15	91312764	91312764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	425	474	0	ENST00000355112.3:c.2503C>T	p.Pro835Ser	p.P835S	ENST00000355112	NM_000057.2	835	Ccc/Tcc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646270	3646270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780697002		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	471	759	1	ENST00000294008.3:c.1808C>T	p.Ser603Leu	p.S603L	ENST00000294008	NM_032444.2	603	tCg/tTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647475	3647475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	96	725	0	ENST00000294008.3:c.1588C>A	p.Leu530Met	p.L530M	ENST00000294008	NM_032444.2	530	Ctg/Atg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807955	3807955	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs764153035		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	56	563	0	ENST00000262367.5:c.3464A>G	p.Asp1155Gly	p.D1155G	ENST00000262367	NM_004380.2	1155	gAc/gGc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858756	9858756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	168	335	0	ENST00000330684.3:c.2645C>A	p.Ser882Tyr	p.S882Y	ENST00000330684	NM_001134407.1	882	tCt/tAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916274	9916274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	185	333	0	ENST00000330684.3:c.2015G>A	p.Arg672Lys	p.R672K	ENST00000330684	NM_001134407.1	672	aGa/aAa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029195	14029195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	153	290	0	ENST00000311895.7:c.1406C>T	p.Pro469Leu	p.P469L	ENST00000311895	NM_005236.2	469	cCt/cTt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56832433	56832433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367699010		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	185	298	0	ENST00000308159.5:c.343G>A	p.Glu115Lys	p.E115K	ENST00000308159	NM_014669.4	115	Gaa/Aaa																																																																														
CBFB	865	MSKCC	GRCh37	16	67063349	67063349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	406	293	1	ENST00000412916.2:c.39G>T	p.Glu13Asp	p.E13D	ENST00000412916		13	gaG/gaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821514	72821514	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	307	466	0	ENST00000268489.5:c.10661A>C	p.Lys3554Thr	p.K3554T	ENST00000268489	NM_006885.3	3554	aAa/aCa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81914518	81914518	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs551539187		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	262	363	0	ENST00000359376.3:c.652C>A	p.Leu218Ile	p.L218I	ENST00000359376	NM_002661.3	218	Ctc/Atc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350831	89350831	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	458	691	0	ENST00000301030.4:c.2119G>T	p.Glu707Ter	p.E707*	ENST00000301030	NM_001256183.1	707	Gaa/Taa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351577	89351577	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778960311		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	469	734	0	ENST00000301030.4:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000301030	NM_001256183.1	458	cGa/cAa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89813010	89813010	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	450	624	0	ENST00000389301.3:c.3495A>C	p.Leu1165Phe	p.L1165F	ENST00000389301	NM_000135.2	1165	ttA/ttC																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974936	15974936	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	198	332	0	ENST00000268712.3:c.3939A>C	p.Lys1313Asn	p.K1313N	ENST00000268712	NM_006311.3	1313	aaA/aaC																																																																														
NF1	4763	MSKCC	GRCh37	17	29483060	29483060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	222	399	0	ENST00000358273.4:c.120G>T	p.Lys40Asn	p.K40N	ENST00000358273	NM_001042492.2	40	aaG/aaT																																																																														
NF1	4763	MSKCC	GRCh37	17	29586092	29586092	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	170	345	0	ENST00000358273.4:c.4375G>T	p.Glu1459Ter	p.E1459*	ENST00000358273	NM_001042492.2	1459	Gaa/Taa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30320887	30320887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	243	317	0	ENST00000322652.5:c.1297C>A	p.Leu433Ile	p.L433I	ENST00000322652	NM_015355.2	433	Ctc/Atc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30322765	30322765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	215	289	0	ENST00000322652.5:c.1778G>A	p.Arg593Lys	p.R593K	ENST00000322652	NM_015355.2	593	aGa/aAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37646974	37646974	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	351	417	0	ENST00000447079.4:c.2096A>C	p.Lys699Thr	p.K699T	ENST00000447079	NM_015083.1	699	aAa/aCa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37672051	37672051	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	297	421	0	ENST00000447079.4:c.2836G>T	p.Glu946Ter	p.E946*	ENST00000447079	NM_015083.1	946	Gaa/Taa																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780593	56780593	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	425	476	0	ENST00000337432.4:c.608A>T	p.Asn203Ile	p.N203I	ENST00000337432	NM_058216.2	203	aAt/aTt																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526100	66526100	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	194	361	0	ENST00000358598.2:c.931G>T	p.Glu311Ter	p.E311*	ENST00000358598	NM_212471.2	311	Gag/Tag																																																																														
YES1	7525	MSKCC	GRCh37	18	742948	742948	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	216	368	0	ENST00000314574.4:c.1030A>G	p.Ile344Val	p.I344V	ENST00000314574	NM_005433.3	344	Att/Gtt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56415021	56415021	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	242	408	0	ENST00000348428.3:c.2422A>C	p.Thr808Pro	p.T808P	ENST00000348428	NM_006785.3	808	Act/Cct																																																																														
INSR	3643	MSKCC	GRCh37	19	7122669	7122669	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913154		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	514	543	0	ENST00000302850.5:c.3485C>T	p.Ala1162Val	p.A1162V	ENST00000302850	NM_000208.2	1162	gCg/gTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250486	10250486	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1168306248		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	107	593	0	ENST00000340748.4:c.3766G>A	p.Asp1256Asn	p.D1256N	ENST00000340748		1256	Gac/Aac																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627725	14627725	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1618	199	592	0	ENST00000254322.2:c.345T>G	p.Phe115Leu	p.F115L	ENST00000254322	NM_006145.1	115	ttT/ttG																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367025	15367025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	205	313	0	ENST00000263377.2:c.1601A>G	p.Asn534Ser	p.N534S	ENST00000263377	NM_058243.2	534	aAc/aGc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948753	17948753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	552	632	0	ENST00000458235.1:c.1689G>T	p.Lys563Asn	p.K563N	ENST00000458235	NM_000215.3	563	aaG/aaT																																																																														
CCNE1	898	MSKCC	GRCh37	19	30311687	30311687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	295	461	0	ENST00000262643.3:c.541G>A	p.Glu181Lys	p.E181K	ENST00000262643	NM_001238.2	181	Gaa/Aaa																																																																														
AKT2	208	MSKCC	GRCh37	19	40741015	40741015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	438	764	0	ENST00000392038.2:c.1303G>A	p.Asp435Asn	p.D435N	ENST00000392038	NM_001626.4	435	Gac/Aac																																																																														
RRAS	6237	MSKCC	GRCh37	19	50143213	50143213	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	490	460	0	ENST00000246792.3:c.143A>C	p.Gln48Pro	p.Q48P	ENST00000246792	NM_006270.3	48	cAg/cCg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46574163	46574163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	405	592	2	ENST00000263734.3:c.178G>A	p.Ala60Thr	p.A60T	ENST00000263734	NM_001430.4	60	Gca/Aca																																																																														
REL	5966	MSKCC	GRCh37	2	61128214	61128214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	124	203	0	ENST00000295025.8:c.390C>A	p.Phe130Leu	p.F130L	ENST00000295025	NM_002908.2	130	ttC/ttA																																																																														
XPO1	7514	MSKCC	GRCh37	2	61729135	61729135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	59	348	0	ENST00000401558.2:c.404T>C	p.Val135Ala	p.V135A	ENST00000401558	NM_003400.3	135	gTt/gCt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61753576	61753576	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	203	322	0	ENST00000401558.2:c.207T>G	p.Phe69Leu	p.F69L	ENST00000401558	NM_003400.3	69	ttT/ttG																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719517	190719517	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	152	238	0	ENST00000441310.2:c.1519T>G	p.Ser507Ala	p.S507A	ENST00000441310	NM_000534.4	507	Tca/Gca																																																																														
CASP8	841	MSKCC	GRCh37	2	202131192	202131192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	159	292	0	ENST00000358485.4:c.160C>A	p.Leu54Ile	p.L54I	ENST00000358485	NM_001080125.1	54	Ctc/Atc																																																																														
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	305	480	1	ENST00000358485.4:c.380G>T	p.Arg127Leu	p.R127L	ENST00000358485	NM_001080125.1	127	cGa/cTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488706	212488706	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	273	502	0	ENST00000342788.4:c.2143G>T	p.Glu715Ter	p.E715*	ENST00000342788	NM_005235.2	715	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576805	212576805	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	232	356	0	ENST00000342788.4:c.1094A>C	p.Asn365Thr	p.N365T	ENST00000342788	NM_005235.2	365	aAt/aCt																																																																														
BARD1	580	MSKCC	GRCh37	2	215645327	215645327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	261	455	0	ENST00000260947.4:c.1271G>T	p.Arg424Ile	p.R424I	ENST00000260947	NM_000465.2	424	aGa/aTa																																																																														
INHA	3623	MSKCC	GRCh37	2	220437235	220437235	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1849	129	774	0	ENST00000243786.2:c.139A>G	p.Thr47Ala	p.T47A	ENST00000243786	NM_002191.3	47	Acc/Gcc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368470	225368470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	199	402	0	ENST00000264414.4:c.1276G>T	p.Asp426Tyr	p.D426Y	ENST00000264414	NM_003590.4	426	Gat/Tat																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368505	225368505	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	168	329	0	ENST00000264414.4:c.1241A>C	p.Lys414Thr	p.K414T	ENST00000264414	NM_003590.4	414	aAa/aCa																																																																														
PAK7	0	MSKCC	GRCh37	20	9543578	9543578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	313	488	0	ENST00000353224.5:c.1576C>A	p.Leu526Ile	p.L526I	ENST00000353224	NM_177990.2	526	Cta/Ata																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46277776	46277776	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	226	386	0	ENST00000371998.3:c.3574G>T	p.Glu1192Ter	p.E1192*	ENST00000371998		1192	Gaa/Taa																																																																														
AURKA	6790	MSKCC	GRCh37	20	54948513	54948513	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	245	388	0	ENST00000312783.6:c.805G>T	p.Glu269Ter	p.E269*	ENST00000312783	NM_198436.1	269	Gag/Tag																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62298845	62298845	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs770742969		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	420	659	0	ENST00000482936.1:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000482936		213	cGg/cAg																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321738	62321738	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	424	534	0	ENST00000482936.1:c.2357C>T	p.Thr786Ile	p.T786I	ENST00000482936		786	aCc/aTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39774538	39774538	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	127	345	0	ENST00000288319.7:c.614C>A	p.Ser205Ter	p.S205*	ENST00000288319	NM_182918.3	205	tCa/tAa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130543	29130543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	423	599	0	ENST00000328354.6:c.167G>T	p.Ser56Ile	p.S56I	ENST00000328354	NM_007194.3	56	aGc/aTc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434198	12434198	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	541	395	0	ENST00000287820.6:c.566A>C	p.Lys189Thr	p.K189T	ENST00000287820	NM_015869.4	189	aAa/aCa																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458537	12458537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1254	458	606	0	ENST00000287820.6:c.1154G>T	p.Arg385Leu	p.R385L	ENST00000287820	NM_015869.4	385	cGa/cTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103727	47103727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	291	403	0	ENST00000409792.3:c.6219G>T	p.Glu2073Asp	p.E2073D	ENST00000409792	NM_014159.6	2073	gaG/gaT																																																																														
MST1	4485	MSKCC	GRCh37	3	49721531	49721531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778105210		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	401	538	0	ENST00000449682.2:c.2108G>A	p.Arg703His	p.R703H	ENST00000449682	NM_020998.3	703	cGc/cAc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442608	52442608	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	306	319	0	ENST00000460680.1:c.137T>G	p.Phe46Cys	p.F46C	ENST00000460680	NM_004656.3	46	tTt/tGt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52713627	52713627	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	409	460	0	ENST00000394830.3:c.101A>C	p.Lys34Thr	p.K34T	ENST00000394830	NM_018313.4	34	aAa/aCa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026849	71026849	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	202	264	0	ENST00000318789.4:c.1373T>G	p.Phe458Cys	p.F458C	ENST00000318789	NM_032682.5	458	tTt/tGt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138400873	138400873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	339	511	0	ENST00000289153.2:c.2440A>G	p.Met814Val	p.M814V	ENST00000289153	NM_006219.2	814	Atg/Gtg																																																																														
ATR	545	MSKCC	GRCh37	3	142242854	142242854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	259	438	1	ENST00000350721.4:c.4133G>A	p.Gly1378Glu	p.G1378E	ENST00000350721	NM_001184.3	1378	gGa/gAa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169988233	169988233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	167	294	0	ENST00000295797.4:c.475G>A	p.Asp159Asn	p.D159N	ENST00000295797	NM_002740.5	159	Gac/Aac																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504976	186504977	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	350	377	0	ENST00000323963.5:c.837dup	p.Leu280SerfsTer12	p.L280Sfs*12	ENST00000323963		278	att/aTtt																																																																														
TP63	8626	MSKCC	GRCh37	3	189608582	189608582	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	335	427	0	ENST00000264731.3:c.1657T>G	p.Leu553Val	p.L553V	ENST00000264731	NM_003722.4	553	Tta/Gta																																																																														
KDR	3791	MSKCC	GRCh37	4	55961019	55961019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	325	531	0	ENST00000263923.4:c.2921G>A	p.Ser974Asn	p.S974N	ENST00000263923	NM_002253.2	974	aGc/aAc																																																																														
TET2	54790	MSKCC	GRCh37	4	106196499	106196499	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs527895107		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	172	357	0	ENST00000380013.4:c.4832C>T	p.Ser1611Phe	p.S1611F	ENST00000380013	NM_001127208.2	1611	tCt/tTt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143033738	143033738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	266	351	0	ENST00000262992.4:c.2233C>A	p.Leu745Ile	p.L745I	ENST00000262992	NM_001101669.1	745	Ctt/Att																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251953	153251953	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs267600040		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	294	485	0	ENST00000281708.4:c.1053G>A	p.Trp351Ter	p.W351*	ENST00000281708	NM_033632.3	351	tgG/tgA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525664	187525664	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	256	481	0	ENST00000441802.2:c.10415A>C	p.Asn3472Thr	p.N3472T	ENST00000441802	NM_005245.3	3472	aAc/aCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542870	187542870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	190	333	0	ENST00000441802.2:c.4870G>T	p.Glu1624Ter	p.E1624*	ENST00000441802	NM_005245.3	1624	Gaa/Taa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38946655	38946655	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	118	233	0	ENST00000357387.3:c.4315-1G>A		p.X1439_splice	ENST00000357387	NM_152756.3	1439																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38982083	38982083	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	282	450	0	ENST00000357387.3:c.639A>C	p.Lys213Asn	p.K213N	ENST00000357387	NM_152756.3	213	aaA/aaC																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168782	56168782	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	83	419	2	ENST00000399503.3:c.1636A>G	p.Thr546Ala	p.T546A	ENST00000399503	NM_005921.1	546	Act/Gct																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754588	57754588	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	317	339	0	ENST00000274289.3:c.459A>C	p.Glu153Asp	p.E153D	ENST00000274289	NM_006622.3	153	gaA/gaC																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589211	67589211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	222	318	0	ENST00000274335.5:c.1199C>A	p.Ser400Tyr	p.S400Y	ENST00000274335		400	tCt/tAt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628460	86628460	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	105	159	0	ENST00000274376.6:c.828+1G>A		p.X276_splice	ENST00000274376	NM_002890.2	276																																																																															
RASA1	5921	MSKCC	GRCh37	5	86670713	86670713	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	79	191	0	ENST00000274376.6:c.1991A>C	p.Lys664Thr	p.K664T	ENST00000274376	NM_002890.2	664	aAa/aCa																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271270	26271270	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238067230		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	306	482	0	ENST00000305910.3:c.343G>A	p.Ala115Thr	p.A115T	ENST00000305910	NM_003534.2	115	Gct/Act																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681841	30681841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	444	572	0	ENST00000376406.3:c.256G>A	p.Ala86Thr	p.A86T	ENST00000376406	NM_014641.2	86	Gca/Aca																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324581	31324581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs151341152		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	480	294	0	ENST00000412585.2:c.227T>C	p.Ile76Thr	p.I76T	ENST00000412585	NM_005514.6	76	aTa/aCa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324721	31324721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	28	87	0	ENST00000412585.2:c.87G>T	p.Met29Ile	p.M29I	ENST00000412585	NM_005514.6	29	atG/atT																																																																														
TAP2	6891	MSKCC	GRCh37	6	32802948	32802948	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	392	413	0	ENST00000374899.4:c.928T>C	p.Tyr310His	p.Y310H	ENST00000374899	NM_018833.2	310	Tac/Cac																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803004	32803004	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769546391		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	475	525	1	ENST00000374899.4:c.872G>A	p.Arg291Gln	p.R291Q	ENST00000374899	NM_018833.2	291	cGa/cAa																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43745216	43745216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	443	522	0	ENST00000523873.1:c.129C>A	p.Phe43Leu	p.F43L	ENST00000523873		43	ttC/ttA																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553348	106553348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	347	415	0	ENST00000369096.4:c.1313G>T	p.Gly438Val	p.G438V	ENST00000369096	NM_001198.3	438	gGc/gTc																																																																														
SESN1	27244	MSKCC	GRCh37	6	109319879	109319879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	395	533	0	ENST00000436639.2:c.809C>T	p.Ser270Phe	p.S270F	ENST00000436639	NM_014454.2	270	tCt/tTt																																																																														
SESN1	27244	MSKCC	GRCh37	6	109321750	109321750	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1032022376		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	502	571	1	ENST00000436639.2:c.673G>T	p.Glu225Ter	p.E225*	ENST00000436639	NM_014454.2	225	Gaa/Taa																																																																														
FYN	2534	MSKCC	GRCh37	6	111995755	111995755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	66	440	0	ENST00000368678.4:c.1343C>A	p.Ser448Tyr	p.S448Y	ENST00000368678		448	tCt/tAt																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519179	137519179	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	143	228	0	ENST00000367739.4:c.1459G>T	p.Glu487Ter	p.E487*	ENST00000367739	NM_000416.2	487	Gaa/Taa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200488	138200488	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs200138929		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	264	414	0	ENST00000237289.4:c.1906C>T	p.His636Tyr	p.H636Y	ENST00000237289	NM_001270507.1	636	Cat/Tat																																																																														
PARK2	0	MSKCC	GRCh37	6	162864379	162864379	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	287	437	0	ENST00000366898.1:c.134T>C	p.Phe45Ser	p.F45S	ENST00000366898	NM_004562.2	45	tTc/tCc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946225	13946225	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	234	340	0	ENST00000405192.2:c.872-1G>T		p.X291_splice	ENST00000405192	NM_001163147.1	291																																																																															
ETV1	2115	MSKCC	GRCh37	7	13978805	13978805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	327	498	1	ENST00000405192.2:c.302C>T	p.Ser101Phe	p.S101F	ENST00000405192	NM_001163147.1	101	tCt/tTt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729320	41729320	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	288	444	0	ENST00000242208.4:c.1209C>A	p.Tyr403Ter	p.Y403*	ENST00000242208	NM_002192.2	403	taC/taA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545741	106545741	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	341	512	0	ENST00000359195.3:c.3218A>C	p.Glu1073Ala	p.E1073A	ENST00000359195	NM_002649.2	1073	gAa/gCa																																																																														
MET	4233	MSKCC	GRCh37	7	116395451	116395452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	56	430	0	ENST00000397752.3:c.1746dup	p.Ile583HisfsTer12	p.I583Hfs*12	ENST00000397752	NM_000245.2	582	acc/aCcc																																																																														
MET	4233	MSKCC	GRCh37	7	116399486	116399486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	267	408	1	ENST00000397752.3:c.2306C>T	p.Ser769Leu	p.S769L	ENST00000397752	NM_000245.2	769	tCa/tTa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148526931	148526931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	128	274	0	ENST00000320356.2:c.373G>T	p.Glu125Ter	p.E125*	ENST00000320356	NM_004456.4	125	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860022	151860022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1342484276		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	181	321	0	ENST00000262189.6:c.10640C>T	p.Ser3547Phe	p.S3547F	ENST00000262189	NM_170606.2	3547	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945402	151945402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	315	519	0	ENST00000262189.6:c.2117G>A	p.Ser706Asn	p.S706N	ENST00000262189	NM_170606.2	706	aGt/aAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152009026	152009026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	179	260	0	ENST00000262189.6:c.596G>A	p.Arg199Gln	p.R199Q	ENST00000262189	NM_170606.2	199	cGa/cAa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38173514	38173514	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1207267789		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	326	454	0	ENST00000317025.8:c.1902T>G	p.Ser634Arg	p.S634R	ENST00000317025	NM_023034.1	634	agT/agG																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187135	38187135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1356401338		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	430	634	0	ENST00000317025.8:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000317025	NM_023034.1	448	Cgg/Tgg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285888	38285888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	367	542	0	ENST00000425967.3:c.523G>A	p.Asp175Asn	p.D175N	ENST00000425967	NM_001174067.1	175	Gat/Aat																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370912	55370912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	378	550	0	ENST00000297316.4:c.214A>G	p.Met72Val	p.M72V	ENST00000297316	NM_022454.3	72	Atg/Gtg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68930127	68930127	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	246	441	0	ENST00000288368.4:c.188A>C	p.Lys63Thr	p.K63T	ENST00000288368	NM_024870.2	63	aAa/aCa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005951	69005951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	204	441	0	ENST00000288368.4:c.2362G>T	p.Val788Leu	p.V788L	ENST00000288368	NM_024870.2	788	Gta/Tta																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319940	8319940	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	179	295	0	ENST00000356435.5:c.5561T>G	p.Phe1854Cys	p.F1854C	ENST00000356435		1854	tTc/tGc																																																																														
FANCC	2176	MSKCC	GRCh37	9	97933393	97933393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	255	360	1	ENST00000289081.3:c.489G>T	p.Glu163Asp	p.E163D	ENST00000289081	NM_000136.2	163	gaG/gaT																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798781	135798781	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1214441043		P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	172	283	0	ENST00000298552.3:c.462C>A	p.Phe154Leu	p.F154L	ENST00000298552	NM_001162426.1	154	ttC/ttA																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793249	139793249	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	517	663	0	ENST00000247668.2:c.57C>A	p.Phe19Leu	p.F19L	ENST00000247668	NM_021138.3	19	ttC/ttA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44936023	44936027	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTC	CCCTC	-			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	351	263	0	ENST00000377967.4:c.2786_2790del	p.Pro929LeufsTer12	p.P929Lfs*12	ENST00000377967	NM_021140.2	928	taCCCTCcc/tacc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650866	48650866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	474	395	0	ENST00000376670.3:c.735G>T	p.Lys245Asn	p.K245N	ENST00000376670	NM_002049.3	245	aaG/aaT																																																																														
AR	367	MSKCC	GRCh37	X	66766214	66766214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	495	224	0	ENST00000374690.3:c.1226G>A	p.Gly409Glu	p.G409E	ENST00000374690	NM_000044.3	409	gGg/gAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76763970	76763970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	360	273	0	ENST00000373344.5:c.7338G>T	p.Met2446Ile	p.M2446I	ENST00000373344	NM_000489.3	2446	atG/atT																																																																														
BTK	695	MSKCC	GRCh37	X	100630182	100630182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	305	281	1	ENST00000308731.7:c.91C>A	p.Leu31Ile	p.L31I	ENST00000308731	NM_000061.2	31	Ctc/Atc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679975	30679975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	89	570	0	ENST00000376406.3:c.1744G>A	p.Glu582Lys	p.E582K	ENST00000376406	NM_014641.2	582	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972509	81972509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755617580		P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	175	557	1	ENST00000359376.3:c.3302C>T	p.Thr1101Met	p.T1101M	ENST00000359376	NM_002661.3	1101	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	338	864	0	ENST00000269305.4:c.481del	p.Ala161ProfsTer9	p.A161Pfs*9	ENST00000269305	NM_001126112.2	161	Gcc/cc																																																																														
RET	5979	MSKCC	GRCh37	10	43600434	43600434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	125	695	1	ENST00000355710.3:c.660C>A	p.Ser220Arg	p.S220R	ENST00000355710	NM_020975.4	220	agC/agA																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14303266	14303266	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	92	675	0	ENST00000256196.4:c.409del	p.Val137Ter	p.V137*	ENST00000256196		137	Gta/ta																																																																														
APC	324	MSKCC	GRCh37	5	112175231	112175231	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	94	240	0	ENST00000257430.4:c.3940del	p.Arg1314GlyfsTer7	p.R1314Gfs*7	ENST00000257430	NM_000038.5	1314	Agg/gg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520099	106520099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	44	213	0	ENST00000359195.3:c.2527C>A	p.Leu843Ile	p.L843I	ENST00000359195	NM_002649.2	843	Ctt/Att																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0040796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	107	702	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004657	16004657	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs528790312		P-0040796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	86	648	0	ENST00000268712.3:c.2597T>C	p.Ile866Thr	p.I866T	ENST00000268712	NM_006311.3	866	aTa/aCa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	142949972	142949972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	70	555	1	ENST00000262992.4:c.2738G>T	p.Arg913Ile	p.R913I	ENST00000262992	NM_001101669.1	913	aGa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576919	7576920	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0040796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	73	702	0	ENST00000269305.4:c.926_927delinsG	p.Pro309ArgfsTer36	p.P309Rfs*36	ENST00000269305	NM_001126112.2	309	cCC/cG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578415	7578415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	526	754	0	ENST00000269305.4:c.515T>A	p.Val172Asp	p.V172D	ENST00000269305	NM_001126112.2	172	gTt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101547	27101547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	251	766	2	ENST00000324856.7:c.4829G>A	p.Gly1610Glu	p.G1610E	ENST00000324856	NM_006015.4	1610	gGg/gAg																																																																														
ATM	472	MSKCC	GRCh37	11	108224558	108224558	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs756899044		P-0040800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	134	338	0	ENST00000278616.4:c.8737G>T	p.Asp2913Tyr	p.D2913Y	ENST00000278616	NM_000051.3	2913	Gat/Tat																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30320884	30320885	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0040800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	129	341	0	ENST00000322652.5:c.1294_1295insA	p.Phe432TyrfsTer4	p.F432Yfs*4	ENST00000322652	NM_015355.2	432	ttt/tAtt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372989163		P-0040810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	174	811	0	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	213	446	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0040810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	158	702	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306550	41306550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760520624		P-0040810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	339	732	0	ENST00000373198.4:c.1109C>T	p.Thr370Met	p.T370M	ENST00000373198	NM_133170.3	370	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112175777	112175777	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	72	359	0	ENST00000257430.4:c.4486del	p.Thr1496LeufsTer11	p.T1496Lfs*11	ENST00000257430	NM_000038.5	1496	Act/ct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425278	49425278	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	511	863	2	ENST00000301067.7:c.13210G>T	p.Gly4404Ter	p.G4404*	ENST00000301067	NM_003482.3	4404	Gga/Tga																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112891079	112891079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1385944040		P-0040811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	384	566	1	ENST00000351677.2:c.413G>A	p.Arg138Gln	p.R138Q	ENST00000351677	NM_002834.3	138	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0040811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	979	770	4	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627675	14627675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754350664		P-0040821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	55	769	0	ENST00000254322.2:c.395C>T	p.Ser132Phe	p.S132F	ENST00000254322	NM_006145.1	132	tCt/tTt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78435615	78435615	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1213414237		P-0040822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	459	516	0	ENST00000370768.2:c.205G>T	p.Asp69Tyr	p.D69Y	ENST00000370768	NM_003902.3	69	Gat/Tat																																																																														
RB1	5925	MSKCC	GRCh37	13	48947585	48947585	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6	542	400	0	ENST00000267163.4:c.1172C>G	p.Ser391Ter	p.S391*	ENST00000267163	NM_000321.2	391	tCa/tGa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961720	41961720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	484	513	0	ENST00000219905.7:c.628G>A	p.Glu210Lys	p.E210K	ENST00000219905	NM_001164273.1	210	Gaa/Aaa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14014075	14014075	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	891	777	0	ENST00000311895.7:c.53A>C	p.Tyr18Ser	p.Y18S	ENST00000311895	NM_005236.2	18	tAc/tCc																																																																														
NF1	4763	MSKCC	GRCh37	17	29654737	29654737	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs771529172		P-0040822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	464	383	0	ENST00000358273.4:c.5489G>C	p.Arg1830Pro	p.R1830P	ENST00000358273	NM_001042492.2	1830	cGc/cCc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211360	36211360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779453478		P-0040822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	767	792	0	ENST00000222270.7:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000222270	NM_014727.1	371	Gaa/Aaa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902710	50902710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	918	836	0	ENST00000440232.2:c.285C>G	p.Ile95Met	p.I95M	ENST00000440232	NM_002691.3	95	atC/atG																																																																														
AGO2	27161	MSKCC	GRCh37	8	141557648	141557648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	473	971	1	ENST00000220592.5:c.1667C>T	p.Thr556Met	p.T556M	ENST00000220592	NM_012154.3	556	aCg/aTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	72	337	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911585	134911585	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	139	585	1	ENST00000398015.3:c.2050G>T	p.Glu684Ter	p.E684*	ENST00000398015	NM_004441.4	684	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0040848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	533	751	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944924	31944924	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	140	393	0	ENST00000340398.3:c.177G>C	p.Glu59Asp	p.E59D	ENST00000340398	NM_001013699.2	59	gaG/gaC																																																																														
ERF	2077	MSKCC	GRCh37	19	42753038	42753038	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	185	859	0	ENST00000222329.4:c.1226T>A	p.Leu409Gln	p.L409Q	ENST00000222329	NM_006494.2	409	cTg/cAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609944	117609944	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs779954823		P-0040848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	37	399	1	ENST00000368508.3:c.6755G>T	p.Cys2252Phe	p.C2252F	ENST00000368508	NM_002944.2	2252	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0040869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	209	660	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120386	94120386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	84	256	1	ENST00000369303.4:c.665C>T	p.Ser222Leu	p.S222L	ENST00000369303	NM_004440.3	222	tCa/tTa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225370674	225370674	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	40	243	0	ENST00000264414.4:c.1205G>A	p.Gly402Glu	p.G402E	ENST00000264414	NM_003590.4	402	gGg/gAg																																																																														
ATM	472	MSKCC	GRCh37	11	108126978	108126978	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	130	456	0	ENST00000278616.4:c.2161C>G	p.Leu721Val	p.L721V	ENST00000278616	NM_000051.3	721	Ctt/Gtt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828021	3828021	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	145	417	0	ENST00000262367.5:c.2104A>T	p.Arg702Ter	p.R702*	ENST00000262367	NM_004380.2	702	Aga/Tga																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72891502	72891502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	136	403	0	ENST00000325599.8:c.260G>A	p.Gly87Glu	p.G87E	ENST00000325599	NM_018130.2	87	gGg/gAg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119720900	119720900	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1025803517		P-0040869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	125	361	0	ENST00000316626.5:c.275G>A	p.Arg92Lys	p.R92K	ENST00000316626		92	aGa/aAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	218	320	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591145	67591145	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	93	296	0	ENST00000274335.5:c.1738T>A	p.Tyr580Asn	p.Y580N	ENST00000274335		580	Tac/Aac																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	174	409	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	91	489	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	68	576	1	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																														
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	179	461	1	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692901	89692901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786204929		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	302	353	0	ENST00000371953.3:c.385G>A	p.Gly129Arg	p.G129R	ENST00000371953	NM_000314.4	129	Gga/Aga																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926248	112926248	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs121918468		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	39	415	0	ENST00000351677.2:c.1381G>A	p.Ala461Thr	p.A461T	ENST00000351677	NM_002834.3	461	Gct/Act																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223788	53223789	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	297	704	0	ENST00000375401.3:c.3570_3571del	p.Cys1190TrpfsTer13	p.C1190Wfs*13	ENST00000375401	NM_004187.3	1190	tgTGgg/tggg																																																																														
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	68	375	0	ENST00000350721.4:c.5440del	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817777	3817778	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	64	438	0	ENST00000262367.5:c.3193_3194del	p.Ser1065Ter	p.S1065*	ENST00000262367	NM_004380.2	1065	AGt/t																																																																														
TET1	80312	MSKCC	GRCh37	10	70332152	70332153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1196853334		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	74	224	4	ENST00000373644.4:c.65dup	p.Lys23GlufsTer37	p.K23Efs*37	ENST00000373644	NM_030625.2	19	-/A																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188294	32188295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs766348245		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	216	573	5	ENST00000375023.3:c.1046dup	p.Thr350HisfsTer4	p.T350Hfs*4	ENST00000375023	NM_004557.3	349	ggc/ggGc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11210198	11210198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	108	465	0	ENST00000361445.4:c.4555G>A	p.Ala1519Thr	p.A1519T	ENST00000361445	NM_004958.3	1519	Gct/Act																																																																														
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	31	75	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427265	49427266	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC	rs398123707		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	113	565	0	ENST00000301067.7:c.11220_11222dup	p.Gln3745dup	p.Q3745dup	ENST00000301067	NM_003482.3	3745	caa/caGCAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589606	67589606	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	43	235	0	ENST00000274335.5:c.1369C>T	p.Gln457Ter	p.Q457*	ENST00000274335		457	Caa/Taa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146945	38146945	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	159	603	0	ENST00000317025.8:c.3197del	p.Asn1066ThrfsTer16	p.N1066Tfs*16	ENST00000317025	NM_023034.1	1066	aAc/ac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426771	49426772	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs944680171		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	96	309	1	ENST00000301067.7:c.11714_11716dup	p.Gln3905dup	p.Q3905dup	ENST00000301067	NM_003482.3	3905	ctg/cAGCtg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161786	56161786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	150	359	0	ENST00000399503.3:c.1283C>T	p.Thr428Met	p.T428M	ENST00000399503	NM_005921.1	428	aCg/aTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55561755	55561755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759250095		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	76	339	0	ENST00000288135.5:c.145C>T	p.Arg49Cys	p.R49C	ENST00000288135	NM_000222.2	49	Cgc/Tgc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111146	193111147	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	52	330	2	ENST00000367435.3:c.687_688del	p.Arg229SerfsTer37	p.R229Sfs*37	ENST00000367435	NM_024529.4	227	AGa/a																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98212155	98212155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	172	370	0	ENST00000331920.6:c.3517G>A	p.Val1173Met	p.V1173M	ENST00000331920	NM_000264.3	1173	Gtg/Atg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	438196	438196	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	106	286	0	ENST00000399788.2:c.1774-1G>A		p.X592_splice	ENST00000399788	NM_001042603.1	592																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440459	49440459	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	330	663	0	ENST00000301067.7:c.4351A>C	p.Ser1451Arg	p.S1451R	ENST00000301067	NM_003482.3	1451	Agc/Cgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893303	32893303	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	109	367	0	ENST00000380152.3:c.161del	p.Asn54ThrfsTer26	p.N54Tfs*26	ENST00000380152		53	Aaa/aa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43769822	43769822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	175	437	0	ENST00000382044.4:c.924G>T	p.Gln308His	p.Q308H	ENST00000382044	NM_001141980.1	308	caG/caT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845856	72845856	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	276	511	0	ENST00000268489.5:c.3611del	p.Ser1204PhefsTer40	p.S1204Ffs*40	ENST00000268489	NM_006885.3	1204	tCt/tt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56348560	56348560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	116	275	0	ENST00000348428.3:c.368G>A	p.Ser123Asn	p.S123N	ENST00000348428	NM_006785.3	123	aGc/aAc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247893	10247893	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1488470434		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	276	600	0	ENST00000340748.4:c.4309C>T	p.Arg1437Cys	p.R1437C	ENST00000340748		1437	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302842	15302842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	164	634	0	ENST00000263388.2:c.608C>A	p.Pro203His	p.P203H	ENST00000263388	NM_000435.2	203	cCc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216700	36216700	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376193493		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	70	529	0	ENST00000222270.7:c.3866C>T	p.Thr1289Met	p.T1289M	ENST00000222270	NM_014727.1	1289	aCg/aTg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662553	227662553	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs958582927		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	167	515	1	ENST00000305123.5:c.902G>A	p.Arg301His	p.R301H	ENST00000305123	NM_005544.2	301	cGc/cAc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434188	12434188	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	150	396	0	ENST00000287820.6:c.556A>T	p.Ser186Cys	p.S186C	ENST00000287820	NM_015869.4	186	Agt/Tgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266654	41266654	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1267755116		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	170	444	0	ENST00000349496.5:c.451C>T	p.Arg151Cys	p.R151C	ENST00000349496	NM_001904.3	151	Cgt/Tgt																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186505615	186505615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	140	325	0	ENST00000323963.5:c.1023A>T	p.Gln341His	p.Q341H	ENST00000323963		341	caA/caT																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31495481	31495481	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	98	408	0	ENST00000344624.3:c.1669-2A>G		p.X557_splice	ENST00000344624		557																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591236	67591258	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGTTTTTCAGGTGGTTGACTC	ACTGTTTTTCAGGTGGTTGACTC	-			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	65	330	0	ENST00000274335.5:c.1746-11_1757del		p.X582_splice	ENST00000274335		582																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636701	176636701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	45	362	1	ENST00000439151.2:c.1301C>A	p.Pro434His	p.P434H	ENST00000439151	NM_022455.4	434	cCc/cAc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056301	26056301	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs374398098		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	207	399	0	ENST00000343677.2:c.356A>C	p.Lys119Thr	p.K119T	ENST00000343677	NM_005319.3	119	aAg/aCg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288635	33288636	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	123	399	0	ENST00000374542.5:c.916dup	p.Arg306ProfsTer38	p.R306Pfs*38	ENST00000374542	NM_001141970.1	306	cga/cCga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987340	2987340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	266	530	1	ENST00000396946.4:c.89G>A	p.Arg30Gln	p.R30Q	ENST00000396946	NM_032415.4	30	cGg/cAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864679	68864679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	52	299	0	ENST00000288368.4:c.50T>C	p.Leu17Pro	p.L17P	ENST00000288368	NM_024870.2	17	cTg/cCg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141557574	141557574	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	266	593	1	ENST00000220592.5:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000220592	NM_012154.3	581	Cag/Tag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739671	145739671	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376364416		P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	49	599	0	ENST00000428558.2:c.1780G>A	p.Ala594Thr	p.A594T	ENST00000428558	NM_004260.3	594	Gca/Aca																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222789	53222789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	296	639	1	ENST00000375401.3:c.4147C>T	p.Gln1383Ter	p.Q1383*	ENST00000375401	NM_004187.3	1383	Cag/Tag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412256	63412256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	164	702	1	ENST00000330258.3:c.911C>A	p.Pro304His	p.P304H	ENST00000330258	NM_152424.3	304	cCt/cAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913386		P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	376	409	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913386		P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	376	409	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	83	491	1	ENST00000269305.4:c.645T>A	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agA																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551823	150551823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	111	231	0	ENST00000369026.2:c.184G>T	p.Gly62Cys	p.G62C	ENST00000369026	NM_021960.4	62	Ggc/Tgc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225367681	225367681	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	60	270	0	ENST00000264414.4:c.1485+1G>T		p.X495_splice	ENST00000264414	NM_003590.4	495																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31024533	31024533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	79	456	0	ENST00000375687.4:c.4018C>G	p.Pro1340Ala	p.P1340A	ENST00000375687	NM_015338.5	1340	Cca/Gca																																																																														
APC	324	MSKCC	GRCh37	5	112175741	112175741	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1165759330		P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	41	237	0	ENST00000257430.4:c.4450G>C	p.Asp1484His	p.D1484H	ENST00000257430	NM_000038.5	1484	Gat/Cat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176684100	176684100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	209	376	1	ENST00000439151.2:c.4914C>A	p.His1638Gln	p.H1638Q	ENST00000439151	NM_022455.4	1638	caC/caA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966716	44966716	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	24	180	1	ENST00000377967.4:c.3940G>T	p.Gly1314Ter	p.G1314*	ENST00000377967	NM_021140.2	1314	Gga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76939562	76939562	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	15	205	0	ENST00000373344.5:c.1186A>T	p.Lys396Ter	p.K396*	ENST00000373344	NM_000489.3	396	Aag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	539	496	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1222982	1222982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs727504172		P-0040945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	209	681	0	ENST00000326873.7:c.921-2A>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
RARA	5914	MSKCC	GRCh37	17	38512474	38512474	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770732457		P-0040945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	90	1059	1	ENST00000254066.5:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000254066	NM_000964.3	462	cCg/cTg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434189	12434189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	37	537	0	ENST00000287820.6:c.557G>T	p.Ser186Ile	p.S186I	ENST00000287820	NM_015869.4	186	aGt/aTt																																																																														
AR	367	MSKCC	GRCh37	X	66765861	66765861	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	111	1132	0	ENST00000374690.3:c.873A>T	p.Lys291Asn	p.K291N	ENST00000374690	NM_000044.3	291	aaA/aaT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0040952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	258	810	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590961	95590961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	25	367	1	ENST00000343455.3:c.948G>T	p.Trp316Cys	p.W316C	ENST00000343455	NM_177438.2	316	tgG/tgT																																																																														
KDR	3791	MSKCC	GRCh37	4	55953898	55953898	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs143459233		P-0040952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	77	580	0	ENST00000263923.4:c.3538A>T	p.Ile1180Leu	p.I1180L	ENST00000263923	NM_002253.2	1180	Ata/Tta																																																																														
APC	324	MSKCC	GRCh37	5	112173435	112173435	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	38	391	0	ENST00000257430.4:c.2144A>C	p.His715Pro	p.H715P	ENST00000257430	NM_000038.5	715	cAc/cCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	111	432	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032023	26032023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	34	443	0	ENST00000244661.2:c.266C>T	p.Ala89Val	p.A89V	ENST00000244661	NM_003537.3	89	gCg/gTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001329	29001329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	46	435	0	ENST00000282397.4:c.1403G>T	p.Trp468Leu	p.W468L	ENST00000282397	NM_002019.4	468	tGg/tTg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527727	103527727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	38	366	0	ENST00000355739.4:c.3035G>T	p.Ser1012Ile	p.S1012I	ENST00000355739	NM_000123.3	1012	aGc/aTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639255	3639255	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138484365		P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	202	875	8	ENST00000294008.3:c.4384G>A	p.Ala1462Thr	p.A1462T	ENST00000294008	NM_032444.2	1462	Gcc/Acc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852243	128852243	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs149170801		P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	85	817	1	ENST00000249373.3:c.2315G>T	p.Arg772Leu	p.R772L	ENST00000249373	NM_005631.4	772	cGc/cTc																																																																														
MYC	4609	MSKCC	GRCh37	8	128751205	128751205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	160	514	0	ENST00000377970.2:c.742G>T	p.Gly248Cys	p.G248C	ENST00000377970	NM_002467.4	248	Ggc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971019	21971045	+	inframe_deletion	In_Frame_Del	DEL	CAGACGGCCCCAGGCATCGCGCACGTC	CAGACGGCCCCAGGCATCGCGCACGTC	-			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	36	577	0	ENST00000304494.5:c.313_339del	p.Asp105_Leu113del	p.D105_L113del	ENST00000304494	NM_000077.4	105	GACGTGCGCGATGCCTGGGGCCGTCTG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971019	21971045	+	inframe_deletion	In_Frame_Del	DEL	CAGACGGCCCCAGGCATCGCGCACGTC	CAGACGGCCCCAGGCATCGCGCACGTC	-			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	36	577	0	ENST00000304494.5:c.313_339del	p.Asp105_Leu113del	p.D105_L113del	ENST00000304494	NM_000077.4	105	GACGTGCGCGATGCCTGGGGCCGTCTG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971019	21971045	+	inframe_deletion	In_Frame_Del	DEL	CAGACGGCCCCAGGCATCGCGCACGTC	CAGACGGCCCCAGGCATCGCGCACGTC	-			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	36	577	0	ENST00000304494.5:c.313_339del	p.Asp105_Leu113del	p.D105_L113del	ENST00000304494	NM_000077.4	105	GACGTGCGCGATGCCTGGGGCCGTCTG/-																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321368	1321369	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0040953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	58	587	0	ENST00000381566.1:c.386_387delinsTT	p.Trp129Phe	p.W129F	ENST00000381566		129	tGG/tTT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs193920774		P-0040960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	512	677	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80537237	80537237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	121	636	0	ENST00000286548.4:c.161C>T	p.Thr54Met	p.T54M	ENST00000286548	NM_002072.3	54	aCg/aTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215948	41215948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55770810		P-0040960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	176	573	1	ENST00000357654.3:c.5095C>T	p.Arg1699Trp	p.R1699W	ENST00000357654	NM_007294.3	1699	Cgg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288552	15288552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	14	88	0	ENST00000263388.2:c.4187G>T	p.Arg1396Leu	p.R1396L	ENST00000263388	NM_000435.2	1396	cGc/cTc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792598	33792810	+	inframe_deletion	In_Frame_Del	DEL	GAGCGCGGGCGCGGGGTGCGGGCTGGGCACGGGCGTGGGCGGCGGCGTGGGGTGACCGGGCTGCAGGTGCATGGTGGTCTGGCCGCAGTGCGCGATCTGGAACTGCAGGTGCGGGGCGGCCAGGTGCGCGGGCGGCGGGTGCGGGTGCGGGTGCGAGGGCGGCGGCGGCGGCGGCGGCTGGTAAGGGAAGAGGCCGGCCAGCGCCAGCTGCTT	GAGCGCGGGCGCGGGGTGCGGGCTGGGCACGGGCGTGGGCGGCGGCGTGGGGTGACCGGGCTGCAGGTGCATGGTGGTCTGGCCGCAGTGCGCGATCTGGAACTGCAGGTGCGGGGCGGCCAGGTGCGCGGGCGGCGGGTGCGGGTGCGGGTGCGAGGGCGGCGGCGGCGGCGGCGGCTGGTAAGGGAAGAGGCCGGCCAGCGCCAGCTGCTT	-			P-0040960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	17	11	0	ENST00000498907.2:c.511_723del	p.Lys171_Leu241del	p.K171_L241del	ENST00000498907	NM_004364.3	171	AAGCAGCTGGCGCTGGCCGGCCTCTTCCCTTACCAGCCGCCGCCGCCGCCGCCGCCCTCGCACCCGCACCCGCACCCGCCGCCCGCGCACCTGGCCGCCCCGCACCTGCAGTTCCAGATCGCGCACTGCGGCCAGACCACCATGCACCTGCAGCCCGGTCACCCCACGCCGCCGCCCACGCCCGTGCCCAGCCCGCACCCCGCGCCCGCGCTC/-																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230757	66230757	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	25	355	0	ENST00000273854.3:c.2214T>A	p.His738Gln	p.H738Q	ENST00000273854	NM_004439.5	738	caT/caA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0041011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	136	793	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039347	47039347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	119	724	2	ENST00000329236.7:c.739G>A	p.Ala247Thr	p.A247T	ENST00000329236	NM_001204466.1	247	Gcg/Acg																																																																														
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	45	232	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920447	114920449	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GCA	GCA	-			P-0041011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	65	423	0	ENST00000543371.1:c.1389_1391del	p.Cys463_Arg464delinsTrp	p.C463_R464delinsW	ENST00000543371	NM_001198531.1	463	tGCAgg/tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416389	49416389	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	55	421	0	ENST00000301067.7:c.16322A>T	p.Lys5441Ile	p.K5441I	ENST00000301067	NM_003482.3	5441	aAa/aTa																																																																														
RET	5979	MSKCC	GRCh37	10	43615153	43615153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	443	1003	3	ENST00000355710.3:c.2567G>T	p.Trp856Leu	p.W856L	ENST00000355710	NM_020975.4	856	tGg/tTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133238115	133238116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	190	557	0	ENST00000320574.5:c.2860_2861dup	p.Tyr956GlyfsTer27	p.Y956Gfs*27	ENST00000320574	NM_006231.2	954	aag/aaAAg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893662	28893662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	258	533	2	ENST00000282397.4:c.3184C>T	p.Pro1062Ser	p.P1062S	ENST00000282397	NM_002019.4	1062	Cct/Tct																																																																														
RB1	5925	MSKCC	GRCh37	13	48951122	48951122	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	162	412	0	ENST00000267163.4:c.1284G>C	p.Glu428Asp	p.E428D	ENST00000267163	NM_000321.2	428	gaG/gaC																																																																														
RB1	5925	MSKCC	GRCh37	13	49039341	49039341	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	343	716	3	ENST00000267163.4:c.2330del	p.Pro777LeufsTer33	p.P777Lfs*33	ENST00000267163	NM_000321.2	776	Ccc/cc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2110787	2110787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	885	1016	0	ENST00000219476.3:c.1092C>G	p.Ile364Met	p.I364M	ENST00000219476	NM_000548.3	364	atC/atG																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14024705	14024705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	216	492	0	ENST00000311895.7:c.931G>C	p.Glu311Gln	p.E311Q	ENST00000311895	NM_005236.2	311	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	472	938	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29562705	29562705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	315	592	0	ENST00000358273.4:c.3785C>A	p.Ser1262Tyr	p.S1262Y	ENST00000358273	NM_001042492.2	1262	tCt/tAt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37673764	37673764	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	321	759	0	ENST00000447079.4:c.2918A>T	p.Lys973Ile	p.K973I	ENST00000447079	NM_015083.1	973	aAa/aTa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37856540	37856540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1307888184		P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	295	453	0	ENST00000269571.5:c.49C>T	p.Pro17Ser	p.P17S	ENST00000269571		17	Ccc/Tcc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468382	89468382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	149	289	1	ENST00000336596.2:c.1916G>T	p.Arg639Leu	p.R639L	ENST00000336596	NM_005233.5	639	cGc/cTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55598050	55598050	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	236	476	1	ENST00000288135.5:c.2247A>T	p.Glu749Asp	p.E749D	ENST00000288135	NM_000222.2	749	gaA/gaT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976838	2976838	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	411	935	1	ENST00000396946.4:c.1174C>T	p.Gln392Ter	p.Q392*	ENST00000396946	NM_032415.4	392	Cag/Tag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376287	225376287	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	42	317	0	ENST00000264414.4:c.667A>T	p.Lys223Ter	p.K223*	ENST00000264414	NM_003590.4	223	Aaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	138	377	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-	rs587780067		P-0041239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	202	658	0	ENST00000269305.4:c.365_366del	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	134	470	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	55	431	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	223	526	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108141986	108141986	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876660628		P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	60	459	1	ENST00000278616.4:c.2930G>T	p.Cys977Phe	p.C977F	ENST00000278616	NM_000051.3	977	tGt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427524	49427524	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs768831474		P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	129	920	0	ENST00000301067.7:c.10964T>G	p.Leu3655Arg	p.L3655R	ENST00000301067	NM_003482.3	3655	cTt/cGt																																																																														
AR	367	MSKCC	GRCh37	X	66766510	66766510	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	149	484	0	ENST00000374690.3:c.1522A>T	p.Met508Leu	p.M508L	ENST00000374690	NM_000044.3	508	Atg/Ttg																																																																														
ATRX	546	MSKCC	GRCh37	X	76940041	76940041	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	164	359	0	ENST00000373344.5:c.707A>T	p.His236Leu	p.H236L	ENST00000373344	NM_000489.3	236	cAt/cTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245273	46245273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	135	639	1	ENST00000334344.6:c.3367G>T	p.Gly1123Trp	p.G1123W	ENST00000334344	NM_152641.2	1123	Ggg/Tgg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362422	40362422	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	122	714	1	ENST00000293328.3:c.1774G>T	p.Gly592Trp	p.G592W	ENST00000293328	NM_012448.3	592	Ggg/Tgg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274695	198274695	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	59	605	0	ENST00000335508.6:c.703A>G	p.Thr235Ala	p.T235A	ENST00000335508	NM_012433.2	235	Aca/Gca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629788	187629788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	179	859	0	ENST00000441802.2:c.1194G>T	p.Leu398Phe	p.L398F	ENST00000441802	NM_005245.3	398	ttG/ttT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0041300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	100	375	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211013	55211013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	161	364	0	ENST00000275493.2:c.256G>A	p.Ala86Thr	p.A86T	ENST00000275493	NM_005228.3	86	Gct/Act																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420266	88420266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	48	415	0	ENST00000360948.2:c.2420G>T	p.Trp807Leu	p.W807L	ENST00000360948	NM_001012338.2	807	tGg/tTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	191	357	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	191	357	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	610	678	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	625	717	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52696229	52696229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	38	482	0	ENST00000394830.3:c.448G>C	p.Glu150Gln	p.E150Q	ENST00000394830	NM_018313.4	150	Gag/Cag																																																																														
RAD52	5893	MSKCC	GRCh37	12	1039289	1039289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11571421		P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	95	423	0	ENST00000358495.3:c.208C>T	p.Arg70Trp	p.R70W	ENST00000358495	NM_134424.2	70	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	191	357	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139818347	139818347	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs776376824		P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	439	686	0	ENST00000247668.2:c.1182C>G	p.Ile394Met	p.I394M	ENST00000247668	NM_021138.3	394	atC/atG																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141031	55141031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	108	285	0	ENST00000257290.5:c.1677G>T	p.Trp559Cys	p.W559C	ENST00000257290	NM_006206.4	559	tgG/tgT																																																																														
ATM	472	MSKCC	GRCh37	11	108098370	108098370	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	38	228	0	ENST00000278616.4:c.19G>C	p.Asp7His	p.D7H	ENST00000278616	NM_000051.3	7	Gat/Cat																																																																														
POLE	5426	MSKCC	GRCh37	12	133219221	133219221	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	249	598	0	ENST00000320574.5:c.4823T>A	p.Leu1608Gln	p.L1608Q	ENST00000320574	NM_006231.2	1608	cTg/cAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133249308	133249308	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	450	640	0	ENST00000320574.5:c.1591G>T	p.Gly531Ter	p.G531*	ENST00000320574	NM_006231.2	531	Gga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434970	110434970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	181	737	0	ENST00000375856.3:c.3431G>T	p.Arg1144Leu	p.R1144L	ENST00000375856	NM_003749.2	1144	cGc/cTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472643	88472643	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	33	288	0	ENST00000360948.2:c.1912A>C	p.Ile638Leu	p.I638L	ENST00000360948	NM_001012338.2	638	Atc/Ctc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56864539	56864539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	153	336	0	ENST00000308159.5:c.1027C>A	p.His343Asn	p.H343N	ENST00000308159	NM_014669.4	343	Cac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992174	72992174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	461	570	0	ENST00000268489.5:c.1871G>T	p.Gly624Val	p.G624V	ENST00000268489	NM_006885.3	624	gGc/gTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81939087	81939087	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	364	467	0	ENST00000359376.3:c.1442T>A	p.Leu481Gln	p.L481Q	ENST00000359376	NM_002661.3	481	cTg/cAg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207069	1207069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	600	769	1	ENST00000326873.7:c.157G>T	p.Asp53Tyr	p.D53Y	ENST00000326873	NM_000455.4	53	Gac/Tac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302882	15302882	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	644	801	0	ENST00000263388.2:c.568A>T	p.Thr190Ser	p.T190S	ENST00000263388	NM_000435.2	190	Aca/Tca																																																																														
CASP8	841	MSKCC	GRCh37	2	202149940	202149940	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	377	544	0	ENST00000358485.4:c.1381G>C	p.Gly461Arg	p.G461R	ENST00000358485	NM_001080125.1	461	Ggg/Cgg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24143238	24143238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	510	590	0	ENST00000263121.7:c.470G>T	p.Gly157Val	p.G157V	ENST00000263121	NM_003073.3	157	gGc/gTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41554433	41554433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	294	318	0	ENST00000263253.7:c.3519G>C	p.Gln1173His	p.Q1173H	ENST00000263253	NM_001429.3	1173	caG/caC																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443880	52443880	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs916069743		P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	569	615	0	ENST00000460680.1:c.15G>T	p.Trp5Cys	p.W5C	ENST00000460680	NM_004656.3	5	tgG/tgT																																																																														
TP63	8626	MSKCC	GRCh37	3	189526190	189526190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766297918		P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	287	581	0	ENST00000264731.3:c.454C>T	p.Pro152Ser	p.P152S	ENST00000264731	NM_003722.4	152	Ccc/Tcc																																																																														
KIT	3815	MSKCC	GRCh37	4	55575700	55575700	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	46	251	0	ENST00000288135.5:c.1226T>G	p.Val409Gly	p.V409G	ENST00000288135	NM_000222.2	409	gTg/gGg																																																																														
KIT	3815	MSKCC	GRCh37	4	55595588	55595588	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	37	200	0	ENST00000288135.5:c.2078A>T	p.Lys693Met	p.K693M	ENST00000288135	NM_000222.2	693	aAg/aTg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131930722	131930722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	37	313	0	ENST00000265335.6:c.1955C>T	p.Ser652Leu	p.S652L	ENST00000265335		652	tCa/tTa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518702	176518702	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	206	477	0	ENST00000292408.4:c.620G>C	p.Trp207Ser	p.W207S	ENST00000292408	NM_213647.1	207	tGg/tCg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30676011	30676011	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	131	481	0	ENST00000376406.3:c.2345C>G	p.Pro782Arg	p.P782R	ENST00000376406	NM_014641.2	782	cCt/cGt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729616	41729616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	387	405	0	ENST00000242208.4:c.913C>G	p.His305Asp	p.H305D	ENST00000242208	NM_002192.2	305	Cat/Gat																																																																														
SMO	6608	MSKCC	GRCh37	7	128845496	128845496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	549	638	0	ENST00000249373.3:c.793G>T	p.Val265Phe	p.V265F	ENST00000249373	NM_005631.4	265	Gtt/Ttt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798752	135798752	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	65	209	0	ENST00000298552.3:c.491G>C	p.Trp164Ser	p.W164S	ENST00000298552	NM_001162426.1	164	tGg/tCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	45	400	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
BLM	641	MSKCC	GRCh37	15	91346819	91346819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140387675		P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	56	402	0	ENST00000355112.3:c.3427G>A	p.Glu1143Lys	p.E1143K	ENST00000355112	NM_000057.2	1143	Gaa/Aaa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044550	47044550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	105	377	1	ENST00000329236.7:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000329236	NM_001204466.1	605	Gag/Tag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65303766	65303766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	44	522	0	ENST00000342505.4:c.2989C>T	p.Arg997Trp	p.R997W	ENST00000342505	NM_002227.2	997	Cgg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892152	9892152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	73	516	0	ENST00000330684.3:c.2338C>G	p.Leu780Val	p.L780V	ENST00000330684	NM_001134407.1	780	Ctt/Gtt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747936	41747936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	65	341	0	ENST00000226382.2:c.833G>T	p.Gly278Val	p.G278V	ENST00000226382	NM_003924.3	278	gGc/gTc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	142950056	142950056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	48	290	0	ENST00000262992.4:c.2654G>T	p.Arg885Leu	p.R885L	ENST00000262992	NM_001101669.1	885	cGc/cTc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737907	145737907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	221	814	0	ENST00000428558.2:c.2923C>A	p.Pro975Thr	p.P975T	ENST00000428558	NM_004260.3	975	Cct/Act																																																																														
SYK	6850	MSKCC	GRCh37	9	93606221	93606221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	79	662	0	ENST00000375746.1:c.41C>T	p.Pro14Leu	p.P14L	ENST00000375746	NM_001174167.1	14	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519977		P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	281	953	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	105	334	0	ENST00000256078.4:c.99T>A	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaA																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954927	2954927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	29	721	0	ENST00000396946.4:c.2783G>A	p.Gly928Glu	p.G928E	ENST00000396946	NM_032415.4	928	gGg/gAg																																																																														
MPL	4352	MSKCC	GRCh37	1	43805114	43805114	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1399460857		P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	188	655	0	ENST00000372470.3:c.564T>G	p.Ile188Met	p.I188M	ENST00000372470	NM_005373.2	188	atT/atG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434112	49434112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	203	725	0	ENST00000301067.7:c.7441G>T	p.Ala2481Ser	p.A2481S	ENST00000301067	NM_003482.3	2481	Gct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440412	49440412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	35	783	0	ENST00000301067.7:c.4398G>T	p.Lys1466Asn	p.K1466N	ENST00000301067	NM_003482.3	1466	aaG/aaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911433	32911433	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	17	356	0	ENST00000380152.3:c.2941A>T	p.Lys981Ter	p.K981*	ENST00000380152		981	Aaa/Taa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25498368	25498368	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	33	430	0	ENST00000264709.3:c.492+1G>T		p.X164_splice	ENST00000264709	NM_175629.2	164																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89445093	89445093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	34	409	0	ENST00000336596.2:c.1413G>C	p.Glu471Asp	p.E471D	ENST00000336596	NM_005233.5	471	gaG/gaC																																																																														
APC	324	MSKCC	GRCh37	5	112175229	112175230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGG			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	52	215	0	ENST00000257430.4:c.3940_3943dup	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1313	act/acTAGGt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047173	180047173	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	25	580	1	ENST00000261937.6:c.2542G>T	p.Gly848Trp	p.G848W	ENST00000261937	NM_182925.4	848	Ggg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860797	151860797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	24	412	0	ENST00000262189.6:c.9865C>A	p.Pro3289Thr	p.P3289T	ENST00000262189	NM_170606.2	3289	Ccc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	96	692	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag																																																																														
CASP8	841	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1272714323		P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	79	577	1	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	427324	427324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	74	520	1	ENST00000399788.2:c.2845C>T	p.Leu949Phe	p.L949F	ENST00000399788	NM_001042603.1	949	Ctt/Ttt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181473	32181473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1372906994		P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	80	578	0	ENST00000375023.3:c.2312G>A	p.Cys771Tyr	p.C771Y	ENST00000375023	NM_004557.3	771	tGt/tAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139403361	139403361	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	99	697	0	ENST00000277541.6:c.3132del	p.Arg1044SerfsTer135	p.R1044Sfs*135	ENST00000277541	NM_017617.3	1044	agG/ag																																																																														
GATA1	2623	MSKCC	GRCh37	X	48651703	48651703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	60	556	0	ENST00000376670.3:c.869A>G	p.Gln290Arg	p.Q290R	ENST00000376670	NM_002049.3	290	cAg/cGg																																																																														
AR	367	MSKCC	GRCh37	X	66766561	66766561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	88	700	0	ENST00000374690.3:c.1573G>T	p.Gly525Cys	p.G525C	ENST00000374690	NM_000044.3	525	Ggc/Tgc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458531	12458531	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	248	624	1	ENST00000287820.6:c.1148G>T	p.Ser383Ile	p.S383I	ENST00000287820	NM_015869.4	383	aGc/aTc																																																																														
TEK	7010	MSKCC	GRCh37	9	27169547	27169547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs991526480		P-0041418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	110	654	0	ENST00000380036.4:c.548C>T	p.Pro183Leu	p.P183L	ENST00000380036	NM_000459.3	183	cCc/cTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913403		P-0041470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	28	329	1	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242483	55242506	+	inframe_deletion	In_Frame_Del	DEL	ATCTCCGAAAGCCAACAAGGAAAT	ATCTCCGAAAGCCAACAAGGAAAT	-	rs727504232		P-0041470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	41	415	0	ENST00000275493.2:c.2253_2276del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	751	acATCTCCGAAAGCCAACAAGGAAATc/acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	71	580	0	ENST00000269305.4:c.734del	p.Gly245AlafsTer2	p.G245Afs*2	ENST00000269305	NM_001126112.2	245	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971154	21971190	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCG	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCG	-			P-0041470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	50	413	0	ENST00000304494.5:c.168_204del	p.Ser56ArgfsTer78	p.S56Rfs*78	ENST00000304494	NM_000077.4	56	agCGCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCG/ag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971154	21971190	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCG	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCG	-			P-0041470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	50	413	0	ENST00000304494.5:c.168_204del	p.Ser56ArgfsTer78	p.S56Rfs*78	ENST00000304494	NM_000077.4	56	agCGCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCG/ag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971154	21971190	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCG	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCG	-			P-0041470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	50	413	0	ENST00000304494.5:c.168_204del	p.Ser56ArgfsTer78	p.S56Rfs*78	ENST00000304494	NM_000077.4	56	agCGCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCG/ag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0041471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	167	416	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0041471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	295	608	1	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5066676	5066676	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0041471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	201	407	0	ENST00000381652.3:c.1215-2A>G		p.X405_splice	ENST00000381652	NM_004972.3	405																																																																															
RB1	5925	MSKCC	GRCh37	13	48916747	48916747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690915		P-0041471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	203	348	0	ENST00000267163.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000267163	NM_000321.2	93	Caa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125245	47125245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	200	433	0	ENST00000409792.3:c.6025G>C	p.Ala2009Pro	p.A2009P	ENST00000409792	NM_014159.6	2009	Gcc/Ccc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115282472	115282472	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	228	482	0	ENST00000438362.2:c.178A>T	p.Asn60Tyr	p.N60Y	ENST00000438362	NM_001242891.1	60	Aat/Tat																																																																														
SETD8	0	MSKCC	GRCh37	12	123874015	123874015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	44	62	0	ENST00000330479.4:c.46G>A	p.Ala16Thr	p.A16T	ENST00000330479	NM_020382.3	16	Gcg/Acg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223234	5223234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	243	671	0	ENST00000357368.4:c.2569G>A	p.Gly857Ser	p.G857S	ENST00000357368	NM_002850.3	857	Ggc/Agc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033378	48033378	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs587779283		P-0041471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	233	460	0	ENST00000234420.5:c.3682G>C	p.Ala1228Pro	p.A1228P	ENST00000234420	NM_000179.2	1228	Gca/Cca																																																																														
HGF	3082	MSKCC	GRCh37	7	81332069	81332069	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	145	281	2	ENST00000222390.5:c.2015A>T	p.Asp672Val	p.D672V	ENST00000222390	NM_000601.4	672	gAt/gTt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5044477	5044477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	263	511	0	ENST00000381652.3:c.425C>G	p.Ala142Gly	p.A142G	ENST00000381652	NM_004972.3	142	gCt/gGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	121	564	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	107	380	0				ENST00000310581	NM_198253.2																																																																																
CUL3	8452	MSKCC	GRCh37	2	225365140	225365140	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	33	340	0	ENST00000264414.4:c.1550C>A	p.Ser517Ter	p.S517*	ENST00000264414	NM_003590.4	517	tCa/tAa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517644	176517644	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1016993541		P-0041590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	58	696	0	ENST00000292408.4:c.345G>C	p.Leu115Phe	p.L115F	ENST00000292408	NM_213647.1	115	ttG/ttC																																																																														
STK19	8859	MSKCC	GRCh37	6	31948256	31948256	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs373414495		P-0041590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	61	570	2	ENST00000375331.2:c.832G>T	p.Val278Phe	p.V278F	ENST00000375331	NM_004197.1	278	Gtc/Ttc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15840862	15840862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	36	342	0	ENST00000307771.7:c.946G>A	p.Glu316Lys	p.E316K	ENST00000307771	NM_005089.3	316	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0041594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	105	373	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860316	151860316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	68	360	0	ENST00000262189.6:c.10346C>T	p.Ser3449Phe	p.S3449F	ENST00000262189	NM_170606.2	3449	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	120	386	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	49050864	49050864	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886042935		P-0041611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	47	358	0	ENST00000267163.4:c.2548C>T	p.Gln850Ter	p.Q850*	ENST00000267163	NM_000321.2	850	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0041611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	239	761	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0041611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	47	380	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922695	44922695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	91	390	0	ENST00000377967.4:c.1556del	p.Arg519HisfsTer29	p.R519Hfs*29	ENST00000377967	NM_021140.2	519	cGa/ca																																																																														
RB1	5925	MSKCC	GRCh37	13	48881523	48881534	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	CATCTGTGGATG	CATCTGTGGATG	-			P-0041611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	26	195	0	ENST00000267163.4:c.245_256del	p.Ser82_Gly86delinsTer	p.S82_G86delins*	ENST00000267163	NM_000321.2	82	tCATCTGTGGATGga/tga																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093443	30093443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	23	305	0	ENST00000331968.5:c.1820G>A	p.Arg607Lys	p.R607K	ENST00000331968	NM_002742.2	607	aGa/aAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350458	89350458	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	147	842	0	ENST00000301030.4:c.2492T>G	p.Phe831Cys	p.F831C	ENST00000301030	NM_001256183.1	831	tTt/tGt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246179	41246179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	65	498	0	ENST00000357654.3:c.1369G>A	p.Glu457Lys	p.E457K	ENST00000357654	NM_007294.3	457	Gaa/Aaa																																																																														
MYC	4609	MSKCC	GRCh37	8	128753155	128753155	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs148863193		P-0041611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	97	337	0	ENST00000377970.2:c.1316G>T	p.Arg439Leu	p.R439L	ENST00000377970	NM_002467.4	439	cGa/cTa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737096	145737096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	118	709	2	ENST00000428558.2:c.3470G>A	p.Ser1157Asn	p.S1157N	ENST00000428558	NM_004260.3	1157	aGc/aAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70357111	70357111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	145	771	0	ENST00000374080.3:c.5626G>A	p.Gly1876Arg	p.G1876R	ENST00000374080		1876	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0041614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	503	799	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
PGR	5241	MSKCC	GRCh37	11	100998799	100998799	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778208375		P-0041614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	530	598	0	ENST00000325455.5:c.1003G>A	p.Ala335Thr	p.A335T	ENST00000325455	NM_001202474.3	335	Gct/Act																																																																														
CDH1	999	MSKCC	GRCh37	16	68867302	68867302	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1337211551		P-0041614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	326	516	0	ENST00000261769.5:c.2549C>G	p.Ser850Cys	p.S850C	ENST00000261769	NM_004360.3	850	tCc/tGc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170737	99170737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	177	320	0	ENST00000074304.5:c.1366C>G	p.Arg456Gly	p.R456G	ENST00000074304	NM_001134224.1	456	Cgg/Ggg																																																																														
BARD1	580	MSKCC	GRCh37	2	215661784	215661784	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0041614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	107	329	0	ENST00000260947.4:c.215+1G>A		p.X72_splice	ENST00000260947	NM_000465.2	72																																																																															
CUL3	8452	MSKCC	GRCh37	2	225365200	225365200	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	73	235	0	ENST00000264414.4:c.1490C>G	p.Ser497Cys	p.S497C	ENST00000264414	NM_003590.4	497	tCt/tGt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729632	41729632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	256	447	0	ENST00000242208.4:c.897G>T	p.Gln299His	p.Q299H	ENST00000242208	NM_002192.2	299	caG/caT																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128434681	128434681	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559227539		P-0041614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	288	572	0	ENST00000265960.3:c.173A>G	p.Asn58Ser	p.N58S	ENST00000265960	NM_001006617.1	58	aAt/aGt																																																																														
ATRX	546	MSKCC	GRCh37	X	76938438	76938438	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs782715802		P-0041614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	140	468	0	ENST00000373344.5:c.2310G>C	p.Gln770His	p.Q770H	ENST00000373344	NM_000489.3	770	caG/caC																																																																														
BTK	695	MSKCC	GRCh37	X	100611833	100611849	+	frameshift_variant	Frame_Shift_Del	DEL	TGATGGCCACGTCGTAC	TGATGGCCACGTCGTAC	-			P-0041614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	29	589	0	ENST00000308731.7:c.1272_1288del	p.Tyr425AspfsTer9	p.Y425Dfs*9	ENST00000308731	NM_000061.2	424	caGTACGACGTGGCCATCAag/caag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609958	117609958	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	406	415	0	ENST00000368508.3:c.6741T>A	p.Asp2247Glu	p.D2247E	ENST00000368508	NM_002944.2	2247	gaT/gaA																																																																														
STK11	6794	MSKCC	GRCh37	19	1220622	1220622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690923		P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	241	736	0	ENST00000326873.7:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000326873	NM_000455.4	214	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913365		P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	72	346	0	ENST00000288602.6:c.1803A>T	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790072	40790072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753667		P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	176	633	0	ENST00000373198.4:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000373198	NM_133170.3	887	Gcc/Acc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261128	16261128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772466830		P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	74	483	0	ENST00000375759.3:c.8393C>T	p.Ala2798Val	p.A2798V	ENST00000375759	NM_015001.2	2798	gCa/gTa																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50483693	50483693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	63	419	0	ENST00000394963.4:c.798G>T	p.Glu266Asp	p.E266D	ENST00000394963	NM_003076.4	266	gaG/gaT																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288762	33288762	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1260764171		P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	37	413	0	ENST00000374542.5:c.790T>C	p.Tyr264His	p.Y264H	ENST00000374542	NM_001141970.1	264	Tac/Cac																																																																														
ATRX	546	MSKCC	GRCh37	X	76938079	76938079	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	94	563	0	ENST00000373344.5:c.2669C>A	p.Ser890Ter	p.S890*	ENST00000373344	NM_000489.3	890	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	340	926	2	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981555	70981555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1570	248	1630	0	ENST00000276594.2:c.541G>T	p.Gly181Cys	p.G181C	ENST00000276594	NM_024504.3	181	Ggt/Tgt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11107003	11107003	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	285	869	1	ENST00000344626.4:c.1708C>T	p.Gln570Ter	p.Q570*	ENST00000344626	NM_003072.3	570	Cag/Tag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435375	121435375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1506	142	1059	0	ENST00000257555.6:c.1408C>A	p.Pro470Thr	p.P470T	ENST00000257555		470	Ccc/Acc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420273	88420273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	235	686	0	ENST00000360948.2:c.2413G>T	p.Gly805Trp	p.G805W	ENST00000360948	NM_001012338.2	805	Ggg/Tgg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112497	2112497	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	349	917	0	ENST00000219476.3:c.1258-1G>T		p.X420_splice	ENST00000219476	NM_000548.3	420																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40739077	40739078	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	245	933	1	ENST00000373198.4:c.3206_3207delinsTT	p.Trp1069Phe	p.W1069F	ENST00000373198	NM_133170.3	1069	tGG/tTT																																																																														
EP300	2033	MSKCC	GRCh37	22	41531892	41531892	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	142	525	0	ENST00000263253.7:c.1604C>G	p.Ser535Ter	p.S535*	ENST00000263253	NM_001429.3	535	tCa/tGa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148526880	148526880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	77	306	0	ENST00000320356.2:c.424G>T	p.Asp142Tyr	p.D142Y	ENST00000320356	NM_004456.4	142	Gat/Tat																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942817	68942817	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	268	819	0	ENST00000288368.4:c.629A>T	p.Asn210Ile	p.N210I	ENST00000288368	NM_024870.2	210	aAc/aTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412147	63412147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	370	583	0	ENST00000330258.3:c.1020G>T	p.Met340Ile	p.M340I	ENST00000330258	NM_152424.3	340	atG/atT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	274	791	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760663	133760663	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	235	1228	1	ENST00000318560.5:c.2986C>T	p.Gln996Ter	p.Q996*	ENST00000318560	NM_005157.4	996	Cag/Tag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420213	88420213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	80	558	1	ENST00000360948.2:c.2473C>A	p.His825Asn	p.H825N	ENST00000360948	NM_001012338.2	825	Cat/Aat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396527	139396527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	251	882	1	ENST00000277541.6:c.5398G>T	p.Ala1800Ser	p.A1800S	ENST00000277541	NM_017617.3	1800	Gct/Tct																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946340	71946340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	495	879	3	ENST00000298229.2:c.2504G>T	p.Gly835Val	p.G835V	ENST00000298229	NM_001567.3	835	gGg/gTg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867421	35867421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1354581284		P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	166	318	0	ENST00000303115.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000303115	NM_002185.3	79	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254750	16254750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	250	590	1	ENST00000375759.3:c.2015G>T	p.Arg672Leu	p.R672L	ENST00000375759	NM_015001.2	672	cGa/cTa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154886	2154886	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1268424766		P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	244	865	2	ENST00000434045.2:c.335C>T	p.Ala112Val	p.A112V	ENST00000434045	NM_001127598.1	112	gCa/gTa																																																																														
INS-IGF2	723961	MSKCC	GRCh37	11	2154896	2154896	+	splice_acceptor_variant,NMD_transcript_variant	Splice_Site	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	222	834	0	ENST00000356578.4:c.*210-1G>T			ENST00000356578																																																																																	
INPPL1	3636	MSKCC	GRCh37	11	71943774	71943774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	117	817	0	ENST00000298229.2:c.1817G>T	p.Gly606Val	p.G606V	ENST00000298229	NM_001567.3	606	gGg/gTg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180415	94180415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	214	529	0	ENST00000323929.3:c.1753G>T	p.Ala585Ser	p.A585S	ENST00000323929	NM_005591.3	585	Gca/Tca																																																																														
PGR	5241	MSKCC	GRCh37	11	100909867	100909867	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	80	207	0	ENST00000325455.5:c.2782C>G	p.Leu928Val	p.L928V	ENST00000325455	NM_001202474.3	928	Ctt/Gtt																																																																														
YAP1	10413	MSKCC	GRCh37	11	102076701	102076701	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	91	527	0	ENST00000282441.5:c.880G>C	p.Val294Leu	p.V294L	ENST00000282441	NM_001130145.2	294	Gtc/Ctc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120791138	120791138	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs748263600		P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	120	850	0	ENST00000257552.2:c.697A>G	p.Thr233Ala	p.T233A	ENST00000257552	NM_002442.3	233	Aca/Gca																																																																														
B2M	567	MSKCC	GRCh37	15	45007776	45007777	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	50	310	0	ENST00000558401.1:c.223_224delinsAA	p.Ser75Asn	p.S75N	ENST00000558401	NM_004048.2	75	TCt/AAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857160	9857160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	110	435	0	ENST00000330684.3:c.4241G>A	p.Arg1414Lys	p.R1414K	ENST00000330684	NM_001134407.1	1414	aGg/aAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858586	9858586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	84	446	0	ENST00000330684.3:c.2815G>A	p.Gly939Arg	p.G939R	ENST00000330684	NM_001134407.1	939	Ggg/Agg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56792548	56792548	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs769436848		P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	108	449	0	ENST00000308159.5:c.278T>G	p.Val93Gly	p.V93G	ENST00000308159	NM_014669.4	93	gTg/gGg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676329	37676329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	199	512	0	ENST00000447079.4:c.3084G>T	p.Met1028Ile	p.M1028I	ENST00000447079	NM_015083.1	1028	atG/atT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226419	41226419	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	91	677	0	ENST00000357654.3:c.4604A>C	p.Glu1535Ala	p.E1535A	ENST00000357654	NM_007294.3	1535	gAg/gCg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688809	47688809	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	70	320	0	ENST00000347630.2:c.491T>C	p.Val164Ala	p.V164A	ENST00000347630	NM_001007230.1	164	gTg/gCg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256826	19256826	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs893528951		P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	159	555	0	ENST00000162023.5:c.887G>T	p.Gly296Val	p.G296V	ENST00000162023		296	gGc/gTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467408	25467409	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	67	602	0	ENST00000264709.3:c.1667_1667+1delinsTT		p.X556_splice	ENST00000264709	NM_175629.2	556																																																																															
MSH2	4436	MSKCC	GRCh37	2	47635666	47635666	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	56	279	0	ENST00000233146.2:c.338A>T	p.Lys113Met	p.K113M	ENST00000233146	NM_000251.2	113	aAg/aTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31016004	31016004	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	72	568	0	ENST00000375687.4:c.326A>G	p.Glu109Gly	p.E109G	ENST00000375687	NM_015338.5	109	gAg/gGg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30686408	30686408	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	60	274	0	ENST00000359013.4:c.338+1G>A		p.X113_splice	ENST00000359013	NM_001024847.2	113																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89448495	89448495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	37	366	0	ENST00000336596.2:c.1459C>A	p.Leu487Met	p.L487M	ENST00000336596	NM_005233.5	487	Ctg/Atg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851795	134851795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	87	791	0	ENST00000398015.3:c.1201C>A	p.Pro401Thr	p.P401T	ENST00000398015	NM_004441.4	401	Ccc/Acc																																																																														
SESN1	27244	MSKCC	GRCh37	6	109322691	109322691	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	31	358	0	ENST00000436639.2:c.346A>T	p.Ile116Phe	p.I116F	ENST00000436639	NM_014454.2	116	Atc/Ttc																																																																														
FYN	2534	MSKCC	GRCh37	6	112041202	112041202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	154	443	0	ENST00000368678.4:c.53G>T	p.Arg18Met	p.R18M	ENST00000368678		18	aGg/aTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129856	69129856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	73	237	0	ENST00000288368.4:c.4610C>T	p.Thr1537Ile	p.T1537I	ENST00000288368	NM_024870.2	1537	aCc/aTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492918	8492918	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	150	546	0	ENST00000356435.5:c.2411del	p.Thr804LysfsTer27	p.T804Kfs*27	ENST00000356435		804	aCa/aa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211410	98211410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	153	799	0	ENST00000331920.6:c.3745G>T	p.Gly1249Cys	p.G1249C	ENST00000331920	NM_000264.3	1249	Ggc/Tgc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918534	44918534	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	70	193	0	ENST00000377967.4:c.1017G>T	p.Gln339His	p.Q339H	ENST00000377967	NM_021140.2	339	caG/caT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	125	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0041676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	111	311	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0041676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	104	1010	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0041676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	12	437	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630552	187630552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1211149994		P-0041676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	203	830	0	ENST00000441802.2:c.430G>A	p.Asp144Asn	p.D144N	ENST00000441802	NM_005245.3	144	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0041866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	91	954	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57466846	57466846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	62	400	0	ENST00000371085.3:c.65C>A	p.Ala22Asp	p.A22D	ENST00000371085	NM_000516.4	22	gCc/gAc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673242	30673242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	69	726	0	ENST00000376406.3:c.3718C>A	p.Pro1240Thr	p.P1240T	ENST00000376406	NM_014641.2	1240	Cct/Act																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044853	47044853	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	36	526	0	ENST00000329236.7:c.1945G>C	p.Gly649Arg	p.G649R	ENST00000329236	NM_001204466.1	649	Gga/Cga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193121511	193121511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0041910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	28	269	0	ENST00000367435.3:c.909A>T	p.Glu303Asp	p.E303D	ENST00000367435	NM_024529.4	303	gaA/gaT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118361952	118361952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	36	274	0	ENST00000534358.1:c.4738G>A	p.Asp1580Asn	p.D1580N	ENST00000534358	NM_005933.3	1580	Gac/Aac																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226345	2226346	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0041910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	251	937	3	ENST00000326181.6:c.1958_1959delinsTT	p.Arg653Leu	p.R653L	ENST00000326181	NM_032271.2	653	cGG/cTT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830820	72830820	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	226	786	0	ENST00000268489.5:c.5761T>G	p.Leu1921Val	p.L1921V	ENST00000268489	NM_006885.3	1921	Ttg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577143	7577144	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0041910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	266	710	0	ENST00000269305.4:c.794_795delinsCT	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTG/cCT																																																																														
NF1	4763	MSKCC	GRCh37	17	29552216	29552216	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0041910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	233	490	0	ENST00000358273.4:c.1949T>G	p.Leu650Ter	p.L650*	ENST00000358273	NM_001042492.2	650	tTa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	161	862	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149501448	149501448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	76	768	0	ENST00000261799.4:c.2339C>A	p.Pro780His	p.P780H	ENST00000261799	NM_002609.3	780	cCc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721232	176721232	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	57	439	0	ENST00000439151.2:c.6863C>G	p.Ser2288Cys	p.S2288C	ENST00000439151	NM_022455.4	2288	tCc/tGc																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64288908	64288908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	65	588	0	ENST00000370651.3:c.304G>T	p.Val102Phe	p.V102F	ENST00000370651	NM_003463.4	102	Gtt/Ttt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	103	581	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4123815	4123815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	315	394	0	ENST00000262948.5:c.58G>A	p.Glu20Lys	p.E20K	ENST00000262948	NM_030662.3	20	Gag/Aag																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30315461	30315462	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0041964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	570	494	0	ENST00000322652.5:c.1150_1151del	p.Leu385ProfsTer10	p.L385Pfs*10	ENST00000322652	NM_015355.2	382	tcAGag/tcag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934829	9934829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	230	489	0	ENST00000330684.3:c.1461G>C	p.Lys487Asn	p.K487N	ENST00000330684	NM_001134407.1	487	aaG/aaC																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998891	11998891	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	32	183	0	ENST00000353533.5:c.394-1G>T		p.X132_splice	ENST00000353533	NM_003010.3	132																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41274919	41274919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	62	295	0	ENST00000349496.5:c.1169A>G	p.Asp390Gly	p.D390G	ENST00000349496	NM_001904.3	390	gAt/gGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	277	349	0				ENST00000310581	NM_198253.2																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101911535	101911535	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113605875		P-0042022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	110	285	0	ENST00000374994.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000374994	NM_004612.2	487	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099431	27099431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768377977		P-0042022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	136	522	0	ENST00000324856.7:c.3668G>A	p.Arg1223His	p.R1223H	ENST00000324856	NM_006015.4	1223	cGc/cAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911624	134911624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	114	493	0	ENST00000398015.3:c.2089A>G	p.Thr697Ala	p.T697A	ENST00000398015	NM_004441.4	697	Aca/Gca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249018	55249019	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACGTG			P-0042022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	108	668	0	ENST00000275493.2:c.2317_2322dup	p.His773_Val774dup	p.H773_V774dup	ENST00000275493	NM_005228.3	773	-/CACGTG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0042034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	100	576	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31424569	31424569	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773151368		P-0042034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	275	921	0	ENST00000344624.3:c.3226G>A	p.Glu1076Lys	p.E1076K	ENST00000344624		1076	Gaa/Aaa																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588107	69588107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	53	840	0	ENST00000168712.1:c.591G>T	p.Met197Ile	p.M197I	ENST00000168712	NM_002007.2	197	atG/atT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	23	687	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	336	1163	1	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790830	89790830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	261	848	0	ENST00000336032.3:c.217C>G	p.Arg73Gly	p.R73G	ENST00000336032	NM_006813.2	73	Cgc/Ggc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426526	49426526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	353	1043	0	ENST00000301067.7:c.11962C>T	p.Gln3988Ter	p.Q3988*	ENST00000301067	NM_003482.3	3988	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499342	89499342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	166	458	0	ENST00000336596.2:c.2512G>C	p.Asp838His	p.D838H	ENST00000336596	NM_005233.5	838	Gat/Cat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433585	49433585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	207	1124	0	ENST00000301067.7:c.7968G>T	p.Leu2656Phe	p.L2656F	ENST00000301067	NM_003482.3	2656	ttG/ttT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892149	9892149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	57	703	0	ENST00000330684.3:c.2341C>T	p.Gln781Ter	p.Q781*	ENST00000330684	NM_001134407.1	781	Cag/Tag																																																																														
CYLD	1540	MSKCC	GRCh37	16	50816350	50816350	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868852255		P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	16	507	0	ENST00000398568.2:c.1790C>T	p.Ser597Phe	p.S597F	ENST00000398568	NM_001042412.1	597	tCt/tTt																																																																														
CIC	23152	MSKCC	GRCh37	19	42791065	42791065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	38	591	0	ENST00000575354.2:c.210G>C	p.Gln70His	p.Q70H	ENST00000575354	NM_015125.3	70	caG/caC																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728587	190728587	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747650016		P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	135	651	0	ENST00000441310.2:c.1975G>A	p.Ala659Thr	p.A659T	ENST00000441310	NM_000534.4	659	Gca/Aca																																																																														
CUL3	8452	MSKCC	GRCh37	2	225338972	225338972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	158	448	0	ENST00000264414.4:c.2297A>G	p.Tyr766Cys	p.Y766C	ENST00000264414	NM_003590.4	766	tAt/tGt																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664858	138664858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	111	216	0	ENST00000330315.3:c.707C>A	p.Pro236His	p.P236H	ENST00000330315	NM_023067.3	236	cCc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55225428	55225428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	172	576	0	ENST00000275493.2:c.1280G>T	p.Arg427Leu	p.R427L	ENST00000275493	NM_005228.3	427	cGc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913386		P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	248	726	0	ENST00000304494.5:c.341C>A	p.Pro114His	p.P114H	ENST00000304494	NM_000077.4	114	cCc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913386		P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	248	726	0	ENST00000304494.5:c.341C>A	p.Pro114His	p.P114H	ENST00000304494	NM_000077.4	114	cCc/cAc																																																																														
AR	367	MSKCC	GRCh37	X	66765398	66765398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	183	912	0	ENST00000374690.3:c.410C>A	p.Ala137Asp	p.A137D	ENST00000374690	NM_000044.3	137	gCc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	136	341	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517973	8517973	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	36	345	0	ENST00000356435.5:c.1418A>T	p.Asp473Val	p.D473V	ENST00000356435		473	gAc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	108	638	0	ENST00000269305.4:c.559G>C	p.Gly187Arg	p.G187R	ENST00000269305	NM_001126112.2	187	Ggt/Cgt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434344	121434344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	54	693	1	ENST00000257555.6:c.1108G>T	p.Val370Phe	p.V370F	ENST00000257555		370	Gtc/Ttc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514871	103514871	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	37	406	0	ENST00000355739.4:c.1372G>T	p.Val458Leu	p.V458L	ENST00000355739	NM_000123.3	458	Gta/Tta																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476294	88476294	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	103	634	0	ENST00000360948.2:c.1838T>C	p.Leu613Pro	p.L613P	ENST00000360948	NM_001012338.2	613	cTc/cCc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39550346	39550347	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	48	319	2	ENST00000262039.4:c.457_458delinsTT	p.Gly153Leu	p.G153L	ENST00000262039	NM_002647.2	153	GGa/TTa																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504363	186504363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	22	218	0	ENST00000323963.5:c.700C>G	p.Arg234Gly	p.R234G	ENST00000323963		234	Cga/Gga																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751587	57751587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	37	266	0	ENST00000274289.3:c.1404G>T	p.Met468Ile	p.M468I	ENST00000274289	NM_006622.3	468	atG/atT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412728	63412728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	60	659	1	ENST00000330258.3:c.439G>T	p.Val147Leu	p.V147L	ENST00000330258	NM_152424.3	147	Gtg/Ttg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184149	123184149	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	23	237	0	ENST00000218089.9:c.1007T>A	p.Met336Lys	p.M336K	ENST00000218089	NM_001042749.1	336	aTg/aAg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0042210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	144	696	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0042210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1735	47	841	1	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
CBL	867	MSKCC	GRCh37	11	119167743	119167743	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0042210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	41	502	1	ENST00000264033.4:c.2152C>T	p.Arg718Ter	p.R718*	ENST00000264033	NM_005188.3	718	Cga/Tga																																																																														
NF2	4771	MSKCC	GRCh37	22	30057204	30057205	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACA			P-0042210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	247	411	0	ENST00000338641.4:c.687_690dup	p.Glu231HisfsTer16	p.E231Hfs*16	ENST00000338641	NM_000268.3	229	ggc/ggCACAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0042214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	47	733	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212381	5212381	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372226485		P-0042214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	57	914	1	ENST00000357368.4:c.4736C>T	p.Pro1579Leu	p.P1579L	ENST00000357368	NM_002850.3	1579	cCg/cTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948865	17948865	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	43	678	0	ENST00000458235.1:c.1577A>G	p.Asn526Ser	p.N526S	ENST00000458235	NM_000215.3	526	aAc/aGc																																																																														
ATR	545	MSKCC	GRCh37	3	142224126	142224126	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1197903798		P-0042214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	49	202	0	ENST00000350721.4:c.5051A>G	p.His1684Arg	p.H1684R	ENST00000350721	NM_001184.3	1684	cAt/cGt																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032237	26032237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	48	290	0	ENST00000244661.2:c.52C>T	p.Arg18Cys	p.R18C	ENST00000244661	NM_003537.3	18	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	219	337	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69230513	69230513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	132	245	0	ENST00000462284.1:c.902C>T	p.Pro301Leu	p.P301L	ENST00000462284	NM_002392.5	301	cCt/cTt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0042318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	103	609	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557843	21558001	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACATAGACTTGTCCATCTTGGCCCTCTTTAACCTGTTGTAATTAGACTCTTTCTGGTAGAGGATCTTCCGCATCTGCTCCTGCTCAGCTTCACAGAGTCCAGCCTGTGTAGAAGGAAAAGGAAGGAGGAAGAATCACATTAGAGAAGTCCCATGATAAC	ACATAGACTTGTCCATCTTGGCCCTCTTTAACCTGTTGTAATTAGACTCTTTCTGGTAGAGGATCTTCCGCATCTGCTCCTGCTCAGCTTCACAGAGTCCAGCCTGTGTAGAAGGAAAAGGAAGGAGGAAGAATCACATTAGAGAAGTCCCATGATAAC	-			P-0042318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	66	714	0	ENST00000382592.4:c.1900-56_2002del		p.X634_splice	ENST00000382592	NM_014572.2	634																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442613	52442613	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0042318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	72	270	0	ENST00000460680.1:c.132T>G	p.Tyr44Ter	p.Y44*	ENST00000460680	NM_004656.3	44	taT/taG																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288852	33288852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767991311		P-0042318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	93	480	0	ENST00000374542.5:c.700C>T	p.Arg234Cys	p.R234C	ENST00000374542	NM_001141970.1	234	Cgc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937776	76937776	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	62	238	0	ENST00000373344.5:c.2972A>T	p.Glu991Val	p.E991V	ENST00000373344	NM_000489.3	991	gAa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	68	327	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040995	47040995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	151	707	0	ENST00000329236.7:c.1291C>T	p.Gln431Ter	p.Q431*	ENST00000329236	NM_001204466.1	431	Caa/Taa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413115	63413115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	100	709	1	ENST00000330258.3:c.52G>T	p.Gly18Trp	p.G18W	ENST00000330258	NM_152424.3	18	Ggg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108099945	108099945	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	29	245	0	ENST00000278616.4:c.226A>T	p.Arg76Ter	p.R76*	ENST00000278616	NM_000051.3	76	Aga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108165705	108165705	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	29	329	0	ENST00000278616.4:c.4828A>G	p.Arg1610Gly	p.R1610G	ENST00000278616	NM_000051.3	1610	Aga/Gga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061225	38061225	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	113	547	0	ENST00000250448.2:c.764A>T	p.Glu255Val	p.E255V	ENST00000250448	NM_004496.3	255	gAg/gTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828282	72828282	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	45	527	0	ENST00000268489.5:c.8299G>T	p.Gly2767Ter	p.G2767*	ENST00000268489	NM_006885.3	2767	Gga/Tga																																																																														
INSR	3643	MSKCC	GRCh37	19	7142881	7142881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	164	638	0	ENST00000302850.5:c.2488C>T	p.Pro830Ser	p.P830S	ENST00000302850	NM_000208.2	830	Cct/Tct																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044524	128044524	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1433368312		P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	57	533	0	ENST00000285398.2:c.1097A>T	p.Asn366Ile	p.N366I	ENST00000285398	NM_000122.1	366	aAc/aTc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660138	227660138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1448309277		P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	83	604	0	ENST00000305123.5:c.3317C>T	p.Ser1106Leu	p.S1106L	ENST00000305123	NM_005544.2	1106	tCa/tTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628434	187628434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	69	749	1	ENST00000441802.2:c.2548G>T	p.Asp850Tyr	p.D850Y	ENST00000441802	NM_005245.3	850	Gac/Tac																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149513452	149513452	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	59	573	1	ENST00000261799.4:c.751del	p.Arg251AlafsTer11	p.R251Afs*11	ENST00000261799	NM_002609.3	251	Cgc/gc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410373	63410373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	134	714	0	ENST00000330258.3:c.2794G>T	p.Asp932Tyr	p.D932Y	ENST00000330258	NM_152424.3	932	Gac/Tac																																																																														
STK11	6794	MSKCC	GRCh37	19	1220694	1220701	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTGGTC	ATCTGGTC	T			P-0042415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	239	838	0	ENST00000326873.7:c.712_719delinsT	p.Ile238TrpfsTer47	p.I238Wfs*47	ENST00000326873	NM_000455.4	238	ATCTGGTCg/Tg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0042501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	22	526	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0042501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	50	288	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101649	27101667	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCTGTTGAAGCCACACA	GCTCTGTTGAAGCCACACA	-			P-0042501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	234	917	0	ENST00000324856.7:c.4933_4951del	p.Ser1645LeufsTer3	p.S1645Lfs*3	ENST00000324856	NM_006015.4	1644	gGCTCTGTTGAAGCCACACAg/gg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441219	52441219	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060503729		P-0042501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	91	427	0	ENST00000460680.1:c.551A>G	p.Asp184Gly	p.D184G	ENST00000460680	NM_004656.3	184	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0042523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	224	696	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	111	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0042523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	119	348	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0042523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	119	348	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0042523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	119	348	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913517		P-0042544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	203	413	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0042587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	85	721	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0042587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	92	859	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0042587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	21	395	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121912578		P-0042596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	43	243	0	ENST00000342988.3:c.1477G>C	p.Asp493His	p.D493H	ENST00000342988	NM_005359.5	493	Gat/Cat																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866493	42866493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			722	139	716	0	ENST00000398585.3:c.139G>T	p.Ala47Ser	p.A47S	ENST00000398585	NM_001135099.1	47	Gct/Tct																																																																														
TOP1	7150	MSKCC	GRCh37	20	39704878	39704878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	17	131	0	ENST00000361337.2:c.223G>A	p.Glu75Lys	p.E75K	ENST00000361337	NM_003286.2	75	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643526	52643526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	28	378	0	ENST00000394830.3:c.2370G>A	p.Met790Ile	p.M790I	ENST00000394830	NM_018313.4	790	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0042649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	107	890	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279540	123279540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779566502		P-0042649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	103	801	1	ENST00000358487.5:c.892G>A	p.Gly298Ser	p.G298S	ENST00000358487	NM_000141.4	298	Ggc/Agc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0042655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	307	832	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934573		P-0042655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	383	707	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404587	8404587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	22	315	0	ENST00000356435.5:c.4160C>T	p.Ala1387Val	p.A1387V	ENST00000356435		1387	gCg/gTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636766	8636766	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776233840		P-0042655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	180	506	0	ENST00000356435.5:c.143C>T	p.Thr48Met	p.T48M	ENST00000356435		48	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	98	376	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1207092	1207092	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs778376925		P-0042669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	147	719	0	ENST00000326873.7:c.180C>A	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/taA																																																																														
AR	367	MSKCC	GRCh37	X	66766312	66766312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1410383824		P-0042669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	56	307	0	ENST00000374690.3:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000374690	NM_000044.3	442	Gaa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11300479	11300479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	140	608	0	ENST00000361445.4:c.1667G>C	p.Gly556Ala	p.G556A	ENST00000361445	NM_004958.3	556	gGc/gCc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425741	49425741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	96	685	0	ENST00000301067.7:c.12747G>T	p.Gln4249His	p.Q4249H	ENST00000301067	NM_003482.3	4249	caG/caT																																																																														
SOS1	6654	MSKCC	GRCh37	2	39285943	39285943	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0042669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	61	295	0	ENST00000402219.2:c.216A>T	p.Glu72Asp	p.E72D	ENST00000402219	NM_005633.3	72	gaA/gaT																																																																														
CUL3	8452	MSKCC	GRCh37	2	225449704	225449704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1034800855		P-0042669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	25	363	0	ENST00000264414.4:c.23C>T	p.Thr8Met	p.T8M	ENST00000264414	NM_003590.4	8	aCg/aTg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31387049	31387049	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0042669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	97	538	0	ENST00000328111.2:c.1675-1G>T		p.X559_splice	ENST00000328111	NM_006892.3	559																																																																															
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	89	603	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	59	504	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396269	139396269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	183	728	0	ENST00000277541.6:c.5569G>T	p.Ala1857Ser	p.A1857S	ENST00000277541	NM_017617.3	1857	Gcc/Tcc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255440	16255440	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	74	513	0	ENST00000375759.3:c.2705A>C	p.Lys902Thr	p.K902T	ENST00000375759	NM_015001.2	902	aAg/aCg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255452	16255452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	65	519	0	ENST00000375759.3:c.2717A>G	p.Asp906Gly	p.D906G	ENST00000375759	NM_015001.2	906	gAc/gGc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647127	23647127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	100	814	0	ENST00000261584.4:c.740C>T	p.Thr247Ile	p.T247I	ENST00000261584	NM_024675.3	247	aCa/aTa																																																																														
AXL	558	MSKCC	GRCh37	19	41736871	41736871	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	69	657	0	ENST00000301178.4:c.587-1G>T		p.X196_splice	ENST00000301178	NM_021913.4	196																																																																															
MYCN	4613	MSKCC	GRCh37	2	16082274	16082274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	84	832	0	ENST00000281043.3:c.88C>T	p.Pro30Ser	p.P30S	ENST00000281043	NM_005378.4	30	Ccg/Tcg																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180277	38180277	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	38	562	1	ENST00000396334.3:c.125T>A	p.Val42Glu	p.V42E	ENST00000396334	NM_002468.4	42	gTg/gAg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508262	106508262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	39	381	0	ENST00000359195.3:c.256G>T	p.Asp86Tyr	p.D86Y	ENST00000359195	NM_002649.2	86	Gac/Tac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53243966	53243966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	85	774	0	ENST00000375401.3:c.1027G>A	p.Asp343Asn	p.D343N	ENST00000375401	NM_004187.3	343	Gat/Aat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245931	46245931	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	26	409	0	ENST00000334344.6:c.4025A>T	p.Glu1342Val	p.E1342V	ENST00000334344	NM_152641.2	1342	gAa/gTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245907	46245929	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCATCTGGGAAACAGAACTCA	GAGCATCTGGGAAACAGAACTCA	-			P-0042706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	25	374	0	ENST00000334344.6:c.4003_4025del	p.Ala1335ThrfsTer10	p.A1335Tfs*10	ENST00000334344	NM_152641.2	1334	gGAGCATCTGGGAAACAGAACTCA/g																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256831	16256831	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	133	679	0	ENST00000375759.3:c.4096C>T	p.Arg1366Ter	p.R1366*	ENST00000375759	NM_015001.2	1366	Cga/Tga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983123	201983123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	331	710	0	ENST00000359651.3:c.972G>A	p.Met324Ile	p.M324I	ENST00000359651		324	atG/atA																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672125	88672125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	181	712	0	ENST00000372037.3:c.659C>T	p.Ser220Phe	p.S220F	ENST00000372037	NM_004329.2	220	tCt/tTt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859646	57859646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	138	618	1	ENST00000228682.2:c.700G>A	p.Glu234Lys	p.E234K	ENST00000228682	NM_005269.2	234	Gaa/Aaa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646911	23646911	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	124	662	0	ENST00000261584.4:c.956C>G	p.Ser319Cys	p.S319C	ENST00000261584	NM_024675.3	319	tCt/tGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822480	72822480	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs963874989		P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	150	839	2	ENST00000268489.5:c.9695G>A	p.Arg3232His	p.R3232H	ENST00000268489	NM_006885.3	3232	cGc/cAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11107025	11107025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	105	578	0	ENST00000344626.4:c.1730C>T	p.Ala577Val	p.A577V	ENST00000344626	NM_003072.3	577	gCc/gTc																																																																														
CASP8	841	MSKCC	GRCh37	2	202131505	202131505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	139	402	0	ENST00000358485.4:c.473C>A	p.Ser158Tyr	p.S158Y	ENST00000358485	NM_001080125.1	158	tCt/tAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41545799	41545799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	114	698	0	ENST00000263253.7:c.2414C>T	p.Ser805Phe	p.S805F	ENST00000263253	NM_001429.3	805	tCt/tTt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1805533	1805533	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532318669		P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	310	730	0	ENST00000260795.2:c.1045C>T	p.His349Tyr	p.H349Y	ENST00000260795		349	Cat/Tat																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806183	1806183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	386	804	1	ENST00000260795.2:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000260795		401	cCc/cTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808955	1808955	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768644781		P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	330	661	0	ENST00000260795.2:c.2387C>T	p.Pro796Leu	p.P796L	ENST00000260795		796	cCg/cTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106196849	106196849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	77	388	0	ENST00000380013.4:c.5182G>A	p.Glu1728Lys	p.E1728K	ENST00000380013	NM_001127208.2	1728	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187519213	187519213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	235	638	0	ENST00000441802.2:c.12170C>T	p.Ser4057Phe	p.S4057F	ENST00000441802	NM_005245.3	4057	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187531165	187531165	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	76	354	0	ENST00000441802.2:c.9858del	p.Val3287TyrfsTer17	p.V3287Yfs*17	ENST00000441802	NM_005245.3	3286	gcC/gc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729784	41729784	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	126	411	0	ENST00000242208.4:c.745G>C	p.Glu249Gln	p.E249Q	ENST00000242208	NM_002192.2	249	Gag/Cag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0042736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	141	381	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471047	8471047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201751722		P-0042736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	38	307	0	ENST00000356435.5:c.3452G>A	p.Arg1151His	p.R1151H	ENST00000356435		1151	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591885	48591885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	75	472	0	ENST00000342988.3:c.1048G>T	p.Val350Phe	p.V350F	ENST00000342988	NM_005359.5	350	Gtt/Ttt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984389	201984389	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	111	579	0	ENST00000359651.3:c.1054T>G	p.Tyr352Asp	p.Y352D	ENST00000359651		352	Tac/Gac																																																																														
MET	4233	MSKCC	GRCh37	7	116423444	116423444	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	73	280	0	ENST00000397752.3:c.3719A>G	p.Lys1240Arg	p.K1240R	ENST00000397752	NM_000245.2	1240	aAa/aGa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0042761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	235	503	0	ENST00000288135.5:c.1669_1674del	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523008	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G	rs769876640		P-0042761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	348	726	0	ENST00000264709.3:c.176dup	p.Val60GlyfsTer5	p.V60Gfs*5	ENST00000264709	NM_175629.2	59	ccg/ccCg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044605	47044605	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0042761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	248	757	0	ENST00000329236.7:c.1866+2T>C		p.X622_splice	ENST00000329236	NM_001204466.1	622																																																																															
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	433	1103	0	ENST00000269305.4:c.166del	p.Glu56LysfsTer67	p.E56Kfs*67	ENST00000269305	NM_001126112.2	56	Gaa/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831834	72831834	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	213	1079	0	ENST00000268489.5:c.4747G>C	p.Gly1583Arg	p.G1583R	ENST00000268489	NM_006885.3	1583	Ggt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	380	813	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	1077	1206	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs786203436		P-0042801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	601	1139	0	ENST00000269305.4:c.487T>A	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	163	Tac/Aac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519896		P-0042801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	178	446	3	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	56	430	0				ENST00000310581	NM_198253.2																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-	rs1354931921		P-0042816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	12	28	0	ENST00000374994.4:c.70_78del	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
INSR	3643	MSKCC	GRCh37	19	7267562	7267564	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0042816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	57	783	0	ENST00000302850.5:c.444_446del	p.Lys148del	p.K148del	ENST00000302850	NM_000208.2	148	aaGAAc/aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	243	252	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	585	1175	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419926	41419926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	88	920	0	ENST00000373198.4:c.395G>A	p.Gly132Glu	p.G132E	ENST00000373198	NM_133170.3	132	gGg/gAg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508805	106508805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762805000		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	200	769	0	ENST00000359195.3:c.799G>A	p.Glu267Lys	p.E267K	ENST00000359195	NM_002649.2	267	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984848	9984848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	81	607	1	ENST00000330684.3:c.1117G>A	p.Glu373Lys	p.E373K	ENST00000330684	NM_001134407.1	373	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1424958105		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	44	262	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131973851	131973851	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747603489		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	23	448	0	ENST00000265335.6:c.3554G>A	p.Arg1185Gln	p.R1185Q	ENST00000265335		1185	cGa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133234477	133234477	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376921543		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	143	612	0	ENST00000320574.5:c.3355C>T	p.Leu1119Phe	p.L1119F	ENST00000320574	NM_006231.2	1119	Ctt/Ttt																																																																														
ABL1	25	MSKCC	GRCh37	9	133760592	133760592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229067		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	319	1367	0	ENST00000318560.5:c.2915C>T	p.Ser972Leu	p.S972L	ENST00000318560	NM_005157.4	972	tCg/tTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332915	153332915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200698994		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	98	498	0	ENST00000281708.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000281708	NM_033632.3	14	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29576048	29576048	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854559		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	280	447	0	ENST00000358273.4:c.4021C>T	p.Gln1341Ter	p.Q1341*	ENST00000358273	NM_001042492.2	1341	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770626	40770626	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	72	488	0	ENST00000373198.4:c.2756A>G	p.Gln919Arg	p.Q919R	ENST00000373198	NM_133170.3	919	cAg/cGg																																																																														
ALK	238	MSKCC	GRCh37	2	29430064	29430064	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1013688370		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	62	850	0	ENST00000389048.3:c.3911G>A	p.Gly1304Glu	p.G1304E	ENST00000389048	NM_004304.4	1304	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295704	212295704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745376683		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	132	368	0	ENST00000342788.4:c.2609G>A	p.Gly870Glu	p.G870E	ENST00000342788	NM_005235.2	870	gGa/gAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400190	41400190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	107	603	0	ENST00000373198.4:c.569G>A	p.Arg190Lys	p.R190K	ENST00000373198	NM_133170.3	190	aGa/aAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005419	29005419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55687105		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	47	212	0	ENST00000282397.4:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000282397	NM_002019.4	281	cGa/cAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180036014	180036014	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761503019		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	95	972	0	ENST00000261937.6:c.3847G>A	p.Glu1283Lys	p.E1283K	ENST00000261937	NM_182925.4	1283	Gag/Aag																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868438023		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	125	1228	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55971152	55971152	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	61	559	0	ENST00000263923.4:c.1646-1G>A		p.X549_splice	ENST00000263923	NM_002253.2	549																																																																															
MGA	23269	MSKCC	GRCh37	15	42054037	42054037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1246555872		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	21	156	0	ENST00000219905.7:c.7499C>T	p.Ser2500Leu	p.S2500L	ENST00000219905	NM_001164273.1	2500	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878052	151878052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	204	532	1	ENST00000262189.6:c.6893C>T	p.Pro2298Leu	p.P2298L	ENST00000262189	NM_170606.2	2298	cCc/cTc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793263	242793263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754424677		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	57	1223	1	ENST00000334409.5:c.814C>T	p.Arg272Trp	p.R272W	ENST00000334409	NM_005018.2	272	Cgg/Tgg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248449	212248449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1256468343		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	120	450	1	ENST00000342788.4:c.3818G>A	p.Arg1273Gln	p.R1273Q	ENST00000342788	NM_005235.2	1273	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948820	71948820	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	66	1317	0	ENST00000298229.2:c.3532C>T	p.Gln1178Ter	p.Q1178*	ENST00000298229	NM_001567.3	1178	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	90	656	1				ENST00000310581	NM_198253.2																																																																																
PGR	5241	MSKCC	GRCh37	11	100999714	100999714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	119	1203	1	ENST00000325455.5:c.88C>T	p.Arg30Cys	p.R30C	ENST00000325455	NM_001202474.3	30	Cgc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923309	9923309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	97	697	0	ENST00000330684.3:c.1978G>A	p.Asp660Asn	p.D660N	ENST00000330684	NM_001134407.1	660	Gac/Aac																																																																														
CYLD	1540	MSKCC	GRCh37	16	50828333	50828333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	65	467	0	ENST00000398568.2:c.2671C>T	p.Arg891Trp	p.R891W	ENST00000398568	NM_001042412.1	891	Cgg/Tgg																																																																														
SYK	6850	MSKCC	GRCh37	9	93641147	93641147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	184	531	0	ENST00000375746.1:c.1493G>A	p.Arg498Lys	p.R498K	ENST00000375746	NM_001174167.1	498	aGa/aAa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372155	55372155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1219111000		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	105	794	0	ENST00000297316.4:c.845C>T	p.Ser282Leu	p.S282L	ENST00000297316	NM_022454.3	282	tCg/tTg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073913	8073913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	121	567	1	ENST00000377482.5:c.746C>T	p.Ser249Phe	p.S249F	ENST00000377482	NM_018948.3	249	tCt/tTt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11189822	11189822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	116	869	0	ENST00000361445.4:c.5687G>T	p.Arg1896Leu	p.R1896L	ENST00000361445	NM_004958.3	1896	cGa/cTa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65305325	65305325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	119	592	0	ENST00000342505.4:c.2803G>A	p.Glu935Lys	p.E935K	ENST00000342505	NM_002227.2	935	Gag/Aag																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115262261	115262261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	132	567	0	ENST00000438362.2:c.2293T>C	p.Phe765Leu	p.F765L	ENST00000438362	NM_001242891.1	765	Ttc/Ctc																																																																														
FH	2271	MSKCC	GRCh37	1	241667402	241667402	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755436052		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	167	628	0	ENST00000366560.3:c.1048C>T	p.Arg350Trp	p.R350W	ENST00000366560	NM_000143.3	350	Cgg/Tgg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154248	2154248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773624887		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	97	1087	0	ENST00000434045.2:c.680C>T	p.Ala227Val	p.A227V	ENST00000434045	NM_001127598.1	227	gCc/gTc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77043813	77043813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	126	800	0	ENST00000356341.3:c.1513G>A	p.Asp505Asn	p.D505N	ENST00000356341	NM_002576.4	505	Gat/Aat																																																																														
PGR	5241	MSKCC	GRCh37	11	100996738	100996738	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	62	392	0	ENST00000325455.5:c.1789G>A	p.Gly597Arg	p.G597R	ENST00000325455	NM_001202474.3	597	Ggg/Agg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118369137	118369137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	90	527	0	ENST00000534358.1:c.5855C>T	p.Ser1952Phe	p.S1952F	ENST00000534358	NM_005933.3	1952	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18649006	18649006	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	74	174	0	ENST00000266497.5:c.2681A>T	p.Tyr894Phe	p.Y894F	ENST00000266497		894	tAt/tTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611420	28611420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	13	204	0	ENST00000241453.7:c.1211C>T	p.Ser404Phe	p.S404F	ENST00000241453	NM_004119.2	404	tCc/tTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913125	32913125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	108	333	0	ENST00000380152.3:c.4633C>T	p.Leu1545Phe	p.L1545F	ENST00000380152		1545	Ctt/Ttt																																																																														
MGA	23269	MSKCC	GRCh37	15	42000379	42000379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	13	216	0	ENST00000219905.7:c.2398C>T	p.His800Tyr	p.H800Y	ENST00000219905	NM_001164273.1	800	Cat/Tat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858589	9858589	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	68	464	0	ENST00000330684.3:c.2812A>C	p.Lys938Gln	p.K938Q	ENST00000330684	NM_001134407.1	938	Aag/Cag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81891924	81891924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	118	734	0	ENST00000359376.3:c.394G>A	p.Glu132Lys	p.E132K	ENST00000359376	NM_002661.3	132	Gaa/Aaa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082970	16082970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	65	738	3	ENST00000281043.3:c.784G>A	p.Asp262Asn	p.D262N	ENST00000281043	NM_005378.4	262	Gat/Aat																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213171	39213171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	125	1150	1	ENST00000402219.2:c.3796C>T	p.Pro1266Ser	p.P1266S	ENST00000402219	NM_005633.3	1266	Cct/Tct																																																																														
SOS1	6654	MSKCC	GRCh37	2	39233570	39233570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	24	160	0	ENST00000402219.2:c.2774C>T	p.Pro925Leu	p.P925L	ENST00000402219	NM_005633.3	925	cCa/cTa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172187	99172187	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1175795483		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	66	835	0	ENST00000074304.5:c.1753C>T	p.Pro585Ser	p.P585S	ENST00000074304	NM_001134224.1	585	Cca/Tca																																																																														
PAK7	0	MSKCC	GRCh37	20	9561531	9561532	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	113	668	0	ENST00000353224.5:c.250_251delinsAA	p.Gly84Asn	p.G84N	ENST00000353224	NM_177990.2	84	GGc/AAc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256688	46256688	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	85	257	0	ENST00000371998.3:c.744T>G	p.Cys248Trp	p.C248W	ENST00000371998		248	tgT/tgG																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46271111	46271111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	113	551	0	ENST00000371998.3:c.3235C>T	p.Pro1079Ser	p.P1079S	ENST00000371998		1079	Cct/Tct																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64289204	64289204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	63	215	0	ENST00000370651.3:c.372G>A	p.Met124Ile	p.M124I	ENST00000370651	NM_003463.4	124	atG/atA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663661	117663661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs986408985		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	36	147	0	ENST00000368508.3:c.4571C>T	p.Ser1524Leu	p.S1524L	ENST00000368508	NM_002944.2	1524	tCa/tTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704647	117704647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	102	314	0	ENST00000368508.3:c.2329G>A	p.Gly777Arg	p.G777R	ENST00000368508	NM_002944.2	777	Gga/Aga																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511062	148511062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	220	362	0	ENST00000320356.2:c.1840G>A	p.Gly614Ser	p.G614S	ENST00000320356	NM_004456.4	614	Ggc/Agc																																																																														
SYK	6850	MSKCC	GRCh37	9	93650843	93650843	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748067972		P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	219	666	1	ENST00000375746.1:c.1769G>A	p.Arg590Gln	p.R590Q	ENST00000375746	NM_001174167.1	590	cGg/cAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258734	16258734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	125	710	0	ENST00000375759.3:c.5999G>A	p.Gly2000Glu	p.G2000E	ENST00000375759	NM_015001.2	2000	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	99	496	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	128	961	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
CBL	867	MSKCC	GRCh37	11	119156140	119156140	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	45	774	0	ENST00000264033.4:c.1808del	p.Pro603GlnfsTer12	p.P603Qfs*12	ENST00000264033	NM_005188.3	602	gCc/gc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21636487	21636487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	97	530	0	ENST00000421138.2:c.523G>T	p.Ala175Ser	p.A175S	ENST00000421138		175	Gct/Tct																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120836	115120836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	44	659	0	ENST00000257566.3:c.170C>A	p.Pro57Gln	p.P57Q	ENST00000257566	NM_016569.3	57	cCg/cAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726716	88726716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	23	552	0	ENST00000360948.2:c.328A>G	p.Ile110Val	p.I110V	ENST00000360948	NM_001012338.2	110	Atc/Gtc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782171	56782171	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	23	451	0	ENST00000308159.5:c.12G>C	p.Glu4Asp	p.E4D	ENST00000308159	NM_014669.4	4	gaG/gaC																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78829286	78829286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	71	634	0	ENST00000306801.3:c.1337G>T	p.Arg446Leu	p.R446L	ENST00000306801	NM_020761.2	446	cGg/cTg																																																																														
CCNE1	898	MSKCC	GRCh37	19	30312990	30312990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	45	619	1	ENST00000262643.3:c.793G>A	p.Val265Met	p.V265M	ENST00000262643	NM_001238.2	265	Gtg/Atg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967305	134967305	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	86	747	0	ENST00000398015.3:c.2644A>C	p.Ile882Leu	p.I882L	ENST00000398015	NM_004441.4	882	Atc/Ctc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31504735	31504735	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	34	537	0	ENST00000344624.3:c.1595A>T	p.Asp532Val	p.D532V	ENST00000344624		532	gAt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577103	7577103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	97	709	0	ENST00000269305.4:c.835G>T	p.Gly279Trp	p.G279W	ENST00000269305	NM_001126112.2	279	Ggg/Tgg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115252318	115252318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	87	285	0	ENST00000369535.4:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000369535	NM_002524.4	108	Gat/Tat																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846309	156846309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	130	688	0	ENST00000524377.1:c.1750C>A	p.Pro584Thr	p.P584T	ENST00000524377	NM_002529.3	584	Ccc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AC			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	77	382	0	ENST00000256078.4:c.33_34delinsGT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcGTgt																																																																														
MDM2	4193	MSKCC	GRCh37	12	69230530	69230531	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	33	270	0	ENST00000462284.1:c.918+2dup		p.X306_splice	ENST00000462284	NM_002392.5	306																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675052	40675052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1418251053		P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	135	606	0	ENST00000249776.8:c.16G>A	p.Ala6Thr	p.A6T	ENST00000249776	NM_033286.3	6	Gcc/Acc																																																																														
CD276	80381	MSKCC	GRCh37	15	73992010	73992010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	186	772	1	ENST00000318443.5:c.30G>T	p.Met10Ile	p.M10I	ENST00000318443	NM_001024736.1	10	atG/atT																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17384795	17384795	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	179	692	0	ENST00000359435.4:c.427G>T	p.Glu143Ter	p.E143*	ENST00000359435	NM_001033549.1	143	Gag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	29450526	29450526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	114	591	0	ENST00000389048.3:c.2828C>A	p.Ala943Asp	p.A943D	ENST00000389048	NM_004304.4	943	gCc/gAc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750370	39750370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	71	305	0	ENST00000361337.2:c.1985G>T	p.Arg662Leu	p.R662L	ENST00000361337	NM_003286.2	662	cGg/cTg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256711	46256711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	110	416	0	ENST00000371998.3:c.767G>C	p.Gly256Ala	p.G256A	ENST00000371998		256	gGa/gCa																																																																														
TP63	8626	MSKCC	GRCh37	3	189604307	189604307	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	43	379	0	ENST00000264731.3:c.1474C>G	p.Pro492Ala	p.P492A	ENST00000264731	NM_003722.4	492	Cct/Gct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509931	187509931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	68	293	0	ENST00000441802.2:c.13582G>T	p.Glu4528Ter	p.E4528*	ENST00000441802	NM_005245.3	4528	Gag/Tag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131895012	131895012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	79	287	0	ENST00000265335.6:c.166G>T	p.Asp56Tyr	p.D56Y	ENST00000265335		56	Gat/Tat																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93953221	93953221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	67	351	0	ENST00000369303.4:c.2920C>G	p.Gln974Glu	p.Q974E	ENST00000369303	NM_004440.3	974	Caa/Gaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931878	68931878	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	212	541	0	ENST00000288368.4:c.308A>T	p.Gln103Leu	p.Q103L	ENST00000288368	NM_024870.2	103	cAa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	208	289	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	818	545	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98212182	98212182	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371346118		P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	176	289	1	ENST00000331920.6:c.3490G>A	p.Val1164Ile	p.V1164I	ENST00000331920	NM_000264.3	1164	Gtt/Att																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513220	44513220	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	319	218	1	ENST00000291552.4:c.715C>T	p.Arg239Ter	p.R239*	ENST00000291552	NM_006758.2	239	Cga/Tga																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202346	138202346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780709741		P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	553	519	0	ENST00000237289.4:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000237289	NM_001270507.1	755	Gaa/Aaa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405141	139405141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1448345366		P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	391	761	1	ENST00000277541.6:c.2704C>T	p.Arg902Cys	p.R902C	ENST00000277541	NM_017617.3	902	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845464	151845464	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	210	474	0	ENST00000262189.6:c.13548A>C	p.Leu4516Phe	p.L4516F	ENST00000262189	NM_170606.2	4516	ttA/ttC																																																																														
APC	324	MSKCC	GRCh37	5	112175350	112175354	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTT	ATTTT	-			P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	187	211	0	ENST00000257430.4:c.4059_4063del	p.Glu1353AspfsTer20	p.E1353Dfs*20	ENST00000257430	NM_000038.5	1353	gaATTTTct/gact																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609638	81609638	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200182253		P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	239	486	0	ENST00000298171.2:c.1236G>A	p.Met412Ile	p.M412I	ENST00000298171	NM_000369.2	412	atG/atA																																																																														
IRF4	3662	MSKCC	GRCh37	6	398884	398884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375133421		P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	482	397	1	ENST00000380956.4:c.694G>A	p.Gly232Arg	p.G232R	ENST00000380956	NM_001195286.1	232	Gga/Aga																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63662078	63662078	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	148	310	0	ENST00000279873.7:c.182G>A	p.Trp61Ter	p.W61*	ENST00000279873	NM_032199.2	61	tGg/tAg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17940934	17940934	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	371	729	0	ENST00000458235.1:c.3190C>G	p.Pro1064Ala	p.P1064A	ENST00000458235	NM_000215.3	1064	Cct/Gct																																																																														
RASA1	5921	MSKCC	GRCh37	5	86649020	86649020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	84	299	0	ENST00000274376.6:c.1300G>C	p.Gly434Arg	p.G434R	ENST00000274376	NM_002890.2	434	Gga/Cga																																																																														
ETV1	2115	MSKCC	GRCh37	7	13949263	13949263	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	275	212	0	ENST00000405192.2:c.865T>A	p.Phe289Ile	p.F289I	ENST00000405192	NM_001163147.1	289	Ttc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057520007		P-0042878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	130	591	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409089	139409089	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs79782048		P-0042878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	176	804	0	ENST00000277541.6:c.2080G>A	p.Glu694Lys	p.E694K	ENST00000277541	NM_017617.3	694	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248980	55248981	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TCCAGGAAGCCT			P-0042878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	176	463	0	ENST00000275493.2:c.2284-5_2290dup		p.X762_splice	ENST00000275493	NM_005228.3	762																																																																															
AR	367	MSKCC	GRCh37	X	66863172	66863172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	157	481	0	ENST00000374690.3:c.1691G>A	p.Gly564Glu	p.G564E	ENST00000374690	NM_000044.3	564	gGa/gAa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233171	69233171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6084	434	238	0	ENST00000462284.1:c.1036G>A	p.Glu346Lys	p.E346K	ENST00000462284	NM_002392.5	346	Gaa/Aaa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233396	69233396	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1225427397		P-0042879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7142	506	254	0	ENST00000462284.1:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000462284	NM_002392.5	421	Gaa/Aaa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233560	69233560	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6623	440	260	0	ENST00000462284.1:c.1425G>C	p.Lys475Asn	p.K475N	ENST00000462284	NM_002392.5	475	aaG/aaC																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0042912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	92	432	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PGR	5241	MSKCC	GRCh37	11	100933283	100933283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1222662053		P-0042912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	44	362	0	ENST00000325455.5:c.2107C>T	p.His703Tyr	p.H703Y	ENST00000325455	NM_001202474.3	703	Cat/Tat																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672755	86672755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	70	224	0	ENST00000274376.6:c.2242G>C	p.Asp748His	p.D748H	ENST00000274376	NM_002890.2	748	Gac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	39	378	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144113	11144113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	139	733	3	ENST00000344626.4:c.3694G>A	p.Gly1232Ser	p.G1232S	ENST00000344626	NM_003072.3	1232	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023745	27023764	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGAACTCCCCAGCCCACC	GGGGAACTCCCCAGCCCACC	-			P-0042935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	39	509	0	ENST00000324856.7:c.852_871del	p.Gly285HisfsTer108	p.G285Hfs*108	ENST00000324856	NM_006015.4	284	gGGGGAACTCCCCAGCCCACC/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099374	27099374	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	94	601	0	ENST00000324856.7:c.3612del	p.Met1205Ter	p.M1205*	ENST00000324856	NM_006015.4	1204	tCc/tc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276699	115276699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	33	329	0	ENST00000438362.2:c.760G>C	p.Glu254Gln	p.E254Q	ENST00000438362	NM_001242891.1	254	Gag/Cag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645475	67645481	+	frameshift_variant	Frame_Shift_Del	DEL	GTAATAT	GTAATAT	-			P-0042935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	41	306	0	ENST00000264010.4:c.741_747del	p.Asn248SerfsTer13	p.N248Sfs*13	ENST00000264010	NM_006565.3	247	gGTAATATg/gg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584674	187584674	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	88	547	1	ENST00000441802.2:c.3359C>A	p.Ser1120Ter	p.S1120*	ENST00000441802	NM_005245.3	1120	tCa/tAa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984404	201984408	+	stop_gained	Nonsense_Mutation	ONP	AACTC	AACTC	CACTG			P-0042935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	105	651	0	ENST00000359651.3:c.1069_1073delinsCACTG	p.Asn357_Ser358delinsHisTer	p.N357_S358delinsH*	ENST00000359651		357	AACTCa/CACTGa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039848	47039848	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	31	489	0	ENST00000329236.7:c.957C>G	p.Ile319Met	p.I319M	ENST00000329236	NM_001204466.1	319	atC/atG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	236	416	13				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453134	140453136	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-	rs397516897		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	258	513	1	ENST00000288602.6:c.1799_1801del	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	600	gTGAaa/gaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444401	50444401	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	462	574	1	ENST00000331340.3:c.331C>T	p.Arg111Ter	p.R111*	ENST00000331340	NM_006060.4	111	Cga/Tga																																																																														
RET	5979	MSKCC	GRCh37	10	43601881	43601881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	402	803	4	ENST00000355710.3:c.925G>A	p.Glu309Lys	p.E309K	ENST00000355710	NM_020975.4	309	Gag/Aag																																																																														
HGF	3082	MSKCC	GRCh37	7	81355283	81355283	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs5745703		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	110	409	0	ENST00000222390.5:c.1091G>A	p.Trp364Ter	p.W364*	ENST00000222390	NM_000601.4	364	tGg/tAg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729162	66729162	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519732		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	456	754	3	ENST00000307102.5:c.370C>T	p.Pro124Ser	p.P124S	ENST00000307102	NM_002755.3	124	Ccg/Tcg																																																																														
APC	324	MSKCC	GRCh37	5	112090657	112090657	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs145945630		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	97	378	1	ENST00000257430.4:c.70C>T	p.Arg24Ter	p.R24*	ENST00000257430	NM_000038.5	24	Cga/Tga																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267600971		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	485	887	2	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740272	162740272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757051385		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	273	488	4	ENST00000367921.3:c.1474C>T	p.Pro492Ser	p.P492S	ENST00000367921	NM_006182.2	492	Cca/Tca																																																																														
TP63	8626	MSKCC	GRCh37	3	189590669	189590669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	189	535	2	ENST00000264731.3:c.1234G>A	p.Glu412Lys	p.E412K	ENST00000264731	NM_003722.4	412	Gaa/Aaa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625228	69625228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868995912		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1239	406	913	2	ENST00000334134.2:c.565G>A	p.Glu189Lys	p.E189K	ENST00000334134	NM_005247.2	189	Gag/Aag																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983071	149983071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	122	680	3	ENST00000253339.5:c.3187G>A	p.Gly1063Arg	p.G1063R	ENST00000253339		1063	Gga/Aga																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197235	26197235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	354	578	6	ENST00000356476.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000356476		82	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099851	27099851	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs550840683		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	301	653	2	ENST00000324856.7:c.3730C>T	p.Pro1244Ser	p.P1244S	ENST00000324856	NM_006015.4	1244	Ccc/Tcc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	71873224	71873224	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756093179		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	165	579	1	ENST00000357731.5:c.970G>A	p.Gly324Arg	p.G324R	ENST00000357731	NM_173808.2	324	Ggg/Agg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120483213	120483213	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	275	591	0	ENST00000256646.2:c.3148A>T	p.Ser1050Cys	p.S1050C	ENST00000256646	NM_024408.3	1050	Agc/Tgc																																																																														
WT1	7490	MSKCC	GRCh37	11	32450061	32450061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751432306		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	311	733	3	ENST00000332351.3:c.751G>A	p.Gly251Ser	p.G251S	ENST00000332351	NM_024426.4	251	Ggc/Agc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623815	28623815	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866905017		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	123	677	0	ENST00000241453.7:c.839G>A	p.Gly280Glu	p.G280E	ENST00000241453	NM_004119.2	280	gGa/gAa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647482	23647482	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1174443228		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	221	764	3	ENST00000261584.4:c.385C>T	p.Pro129Ser	p.P129S	ENST00000261584	NM_024675.3	129	Ccc/Tcc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553328	106553328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	288	623	3	ENST00000369096.4:c.1293G>A	p.Met431Ile	p.M431I	ENST00000369096	NM_001198.3	431	atG/atA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724424	117724424	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1279832487		P-0042993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	257	685	4	ENST00000368508.3:c.455C>T	p.Ser152Phe	p.S152F	ENST00000368508	NM_002944.2	152	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0043018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	505	883	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248980	55248981	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TCCAGGAAGCAT			P-0043018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	435	711	0	ENST00000275493.2:c.2288_2289insATTCCAGGAAGC		p.X763_splice	ENST00000275493	NM_005228.3	763																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	444	1090	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140439637	140439637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	47	243	0	ENST00000288602.6:c.2102G>C	p.Arg701Thr	p.R701T	ENST00000288602	NM_004333.4	701	aGa/aCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444900	49444900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	271	1056	0	ENST00000301067.7:c.2566G>C	p.Glu856Gln	p.E856Q	ENST00000301067	NM_003482.3	856	Gag/Cag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262429	16262429	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	70	569	0	ENST00000375759.3:c.9694G>T	p.Glu3232Ter	p.E3232*	ENST00000375759	NM_015001.2	3232	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097608	27097608	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	88	613	0	ENST00000324856.7:c.3199-2A>G		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363281	40363281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	226	918	0	ENST00000397332.2:c.948C>A	p.His316Gln	p.H316Q	ENST00000397332	NM_001033082.2	316	caC/caA																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115269651	115269651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	90	370	0	ENST00000438362.2:c.1555C>G	p.Gln519Glu	p.Q519E	ENST00000438362	NM_001242891.1	519	Caa/Gaa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154851	2154851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	151	1115	0	ENST00000434045.2:c.370G>C	p.Glu124Gln	p.E124Q	ENST00000434045	NM_001127598.1	124	Gag/Cag																																																																														
RECQL	5965	MSKCC	GRCh37	12	21643300	21643300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	77	237	0	ENST00000421138.2:c.227C>T	p.Ser76Phe	p.S76F	ENST00000421138		76	tCt/tTt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690608	88690608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	122	589	1	ENST00000360948.2:c.422C>A	p.Thr141Lys	p.T141K	ENST00000360948	NM_001012338.2	141	aCa/aAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012115	16012115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	94	240	0	ENST00000268712.3:c.2167C>G	p.Pro723Ala	p.P723A	ENST00000268712	NM_006311.3	723	Cca/Gca																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170540	11170540	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	252	1076	1	ENST00000344626.4:c.4747G>T	p.Glu1583Ter	p.E1583*	ENST00000344626	NM_003072.3	1583	Gag/Tag																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086074	16086074	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	152	786	0	ENST00000281043.3:c.1250C>A	p.Ala417Asp	p.A417D	ENST00000281043	NM_005378.4	417	gCc/gAc																																																																														
ALK	238	MSKCC	GRCh37	2	29445423	29445423	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	150	1083	0	ENST00000389048.3:c.3410G>C	p.Gly1137Ala	p.G1137A	ENST00000389048	NM_004304.4	1137	gGa/gCa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99189277	99189277	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	167	598	0	ENST00000074304.5:c.2534-1G>A		p.X845_splice	ENST00000074304	NM_001134224.1	845																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468539	89468539	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	30	190	0	ENST00000336596.2:c.2073A>C	p.Lys691Asn	p.K691N	ENST00000336596	NM_005233.5	691	aaA/aaC																																																																														
KIT	3815	MSKCC	GRCh37	4	55561781	55561781	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs755092278		P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	167	495	0	ENST00000288135.5:c.171A>T	p.Leu57Phe	p.L57F	ENST00000288135	NM_000222.2	57	ttA/ttT																																																																														
KDR	3791	MSKCC	GRCh37	4	55955970	55955970	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	117	326	0	ENST00000263923.4:c.3193-1G>T		p.X1065_splice	ENST00000263923	NM_002253.2	1065																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66286187	66286187	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	43	171	0	ENST00000273854.3:c.1499T>A	p.Leu500Gln	p.L500Q	ENST00000273854	NM_004439.5	500	cTa/cAa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80064788	80064788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	40	141	0	ENST00000265081.6:c.2219C>T	p.Pro740Leu	p.P740L	ENST00000265081	NM_002439.4	740	cCt/cTt																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778161	27778161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	111	1040	0	ENST00000369163.2:c.310C>A	p.Leu104Ile	p.L104I	ENST00000369163	NM_003536.2	104	Ctc/Atc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946188	13946188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	99	487	0	ENST00000405192.2:c.908G>C	p.Gly303Ala	p.G303A	ENST00000405192	NM_001163147.1	303	gGa/gCa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273126	55273126	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745321541		P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	334	910	0	ENST00000275493.2:c.3449C>T	p.Thr1150Ile	p.T1150I	ENST00000275493	NM_005228.3	1150	aCa/aTa																																																																														
HGF	3082	MSKCC	GRCh37	7	81381567	81381567	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	37	175	0	ENST00000222390.5:c.494C>A	p.Ser165Ter	p.S165*	ENST00000222390	NM_000601.4	165	tCg/tAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460511	8460511	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1213689339		P-0043020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	213	634	0	ENST00000356435.5:c.3775C>A	p.Pro1259Thr	p.P1259T	ENST00000356435		1259	Cca/Aca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0043031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	404	703	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0043031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	260	858	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216711	36216711	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770209871		P-0043031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1543	93	536	0	ENST00000222270.7:c.3877C>T	p.Arg1293Cys	p.R1293C	ENST00000222270	NM_014727.1	1293	Cgc/Tgc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967054	25967054	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1303307752		P-0043031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	93	660	0	ENST00000435504.4:c.2152G>A	p.Asp718Asn	p.D718N	ENST00000435504		718	Gac/Aac																																																																														
BARD1	580	MSKCC	GRCh37	2	215593555	215593555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881424		P-0043031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	48	362	0	ENST00000260947.4:c.2179G>A	p.Asp727Asn	p.D727N	ENST00000260947	NM_000465.2	727	Gat/Aat																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22142668	22142668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	17	276	0	ENST00000215832.6:c.734G>A	p.Gly245Glu	p.G245E	ENST00000215832	NM_002745.4	245	gGa/gAa																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15840928	15840928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	34	356	0	ENST00000307771.7:c.1012G>A	p.Glu338Lys	p.E338K	ENST00000307771	NM_005089.3	338	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732942	44733085	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCGGCGGACTGGACAGGTACGGGCCGCCGTCACTCGCCCGGTCGGCTCCGGACGGGCAGTAGCCGCTCTCCCGGGAGGACCGAGCGCGGCTTGTCTCTGGCGGCGGCGGGGCGGGCACCTCGGTTTGGCGCTCTTCGCGCCGC	CTCGGCGGACTGGACAGGTACGGGCCGCCGTCACTCGCCCGGTCGGCTCCGGACGGGCAGTAGCCGCTCTCCCGGGAGGACCGAGCGCGGCTTGTCTCTGGCGGCGGCGGGGCGGGCACCTCGGTTTGGCGCTCTTCGCGCCGC	-			P-0043031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	91	564	0	ENST00000377967.4:c.148_162-82del		p.X50_splice	ENST00000377967	NM_021140.2	50																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0043049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	425	832	3	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866382	42866382	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	425	780	0	ENST00000398585.3:c.250T>A	p.Ser84Thr	p.S84T	ENST00000398585	NM_001135099.1	84	Tcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	10	346	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	24	641	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0043155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	27	906	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0043155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	75	473	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
TSC1	7248	MSKCC	GRCh37	9	135802635	135802635	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs118203343		P-0043155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	16	363	0	ENST00000298552.3:c.163C>T	p.Gln55Ter	p.Q55*	ENST00000298552	NM_001162426.1	55	Cag/Tag																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023133	33023133	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	59	593	0	ENST00000300177.4:c.242del	p.Leu81ArgfsTer3	p.L81Rfs*3	ENST00000300177	NM_001191322.1	81	cTg/cg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401285	139401285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	34	976	1	ENST00000277541.6:c.3784G>A	p.Glu1262Lys	p.E1262K	ENST00000277541	NM_017617.3	1262	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	151	515	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	93	404	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	89	678	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463317	25463317	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	41	491	0	ENST00000264709.3:c.2176G>T	p.Gly726Cys	p.G726C	ENST00000264709	NM_175629.2	726	Ggc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108151830	108151830	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876659067		P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	36	480	0	ENST00000278616.4:c.3511C>T	p.Gln1171Ter	p.Q1171*	ENST00000278616	NM_000051.3	1171	Cag/Tag																																																																														
WT1	7490	MSKCC	GRCh37	11	32438066	32438066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	54	569	0	ENST00000332351.3:c.971G>A	p.Ser324Asn	p.S324N	ENST00000332351	NM_024426.4	324	aGc/aAc																																																																														
YAP1	10413	MSKCC	GRCh37	11	102056816	102056817	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	52	471	0	ENST00000282441.5:c.756_757delinsTT	p.Lys252_Asn253delinsAsnTyr	p.K252_N253delinsNY	ENST00000282441	NM_001130145.2	252	aaGAac/aaTTac																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804278	46804278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	144	711	0	ENST00000290295.7:c.729G>T	p.Lys243Asn	p.K243N	ENST00000290295	NM_006361.5	243	aaG/aaT																																																																														
BARD1	580	MSKCC	GRCh37	2	215674166	215674166	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1060501305		P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	73	596	0	ENST00000260947.4:c.128G>T	p.Arg43Leu	p.R43L	ENST00000260947	NM_000465.2	43	cGc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1255441	1255442	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	209	658	3	ENST00000310581.5:c.3117_3118delinsTT	p.Ala1040Ser	p.A1040S	ENST00000310581	NM_198253.2	1039	acGGcc/acTTcc																																																																														
HGF	3082	MSKCC	GRCh37	7	81388081	81388081	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	41	469	0	ENST00000222390.5:c.294G>C	p.Trp98Cys	p.W98C	ENST00000222390	NM_000601.4	98	tgG/tgC																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522638	106522638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	34	358	0	ENST00000359195.3:c.2615C>A	p.Thr872Asn	p.T872N	ENST00000359195	NM_002649.2	872	aCt/aAt																																																																														
CD274	29126	MSKCC	GRCh37	9	5457346	5457346	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	23	271	0	ENST00000381577.3:c.320A>G	p.Gln107Arg	p.Q107R	ENST00000381577	NM_014143.3	107	cAg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0043245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	95	355	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0043245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	62	424	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0043350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	106	754	1	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443481	49443481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781156556		P-0043350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	59	455	0	ENST00000301067.7:c.3890G>A	p.Arg1297His	p.R1297H	ENST00000301067	NM_003482.3	1297	cGt/cAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47139527	47139527	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	67	444	0	ENST00000409792.3:c.5060del	p.Gly1687ValfsTer18	p.G1687Vfs*18	ENST00000409792	NM_014159.6	1687	gGt/gt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120701	94120701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	73	477	2	ENST00000369303.4:c.350G>C	p.Gly117Ala	p.G117A	ENST00000369303	NM_004440.3	117	gGa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	148	734	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	192	419	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3115012	3115012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	449	797	1	ENST00000078429.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000078429	NM_002067.2	183	Cgc/Tgc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123211855	123211855	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	151	144	0	ENST00000218089.9:c.2722A>G	p.Arg908Gly	p.R908G	ENST00000218089	NM_001042749.1	908	Agg/Ggg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	408	537	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376727	31376727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	156	379	0	ENST00000328111.2:c.722C>T	p.Ala241Val	p.A241V	ENST00000328111	NM_006892.3	241	gCc/gTc																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778167	27778167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	364	501	0	ENST00000369163.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000369163	NM_003536.2	106	Gag/Aag																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68353890	68353890	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	286	332	0	ENST00000487270.1:c.725T>C	p.Leu242Ser	p.L242S	ENST00000487270	NM_133509.3	242	tTg/tCg																																																																														
RET	5979	MSKCC	GRCh37	10	43606777	43606777	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	372	612	0	ENST00000355710.3:c.1389del	p.Ile464SerfsTer4	p.I464Sfs*4	ENST00000355710	NM_020975.4	462	tcG/tc																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281417	49281417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	392	532	0	ENST00000282018.3:c.464C>T	p.Ala155Val	p.A155V	ENST00000282018	NM_020377.2	155	gCc/gTc																																																																														
ALK	238	MSKCC	GRCh37	2	29519776	29519776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	32	427	0	ENST00000389048.3:c.1795C>T	p.Pro599Ser	p.P599S	ENST00000389048	NM_004304.4	599	Cct/Tct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164478	47164478	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	240	236	0	ENST00000409792.3:c.1648A>T	p.Ser550Cys	p.S550C	ENST00000409792	NM_014159.6	550	Agt/Tgt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157511345	157511345	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	84	311	0	ENST00000346085.5:c.3862+1G>T		p.X1288_splice	ENST00000346085	NM_020732.3	1288																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274930	38274930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	37	514	0	ENST00000425967.3:c.1650C>G	p.Asp550Glu	p.D550E	ENST00000425967	NM_001174067.1	550	gaC/gaG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970913	21970913	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	486	546	0	ENST00000304494.5:c.445del	p.Glu149LysfsTer44	p.E149Kfs*44	ENST00000304494	NM_000077.4	149	Gaa/aa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970913	21970913	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	486	546	0	ENST00000304494.5:c.445del	p.Glu149LysfsTer44	p.E149Kfs*44	ENST00000304494	NM_000077.4	149	Gaa/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	21	262	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923601	39923601	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	51	240	0	ENST00000378444.4:c.3490C>T	p.Arg1164Ter	p.R1164*	ENST00000378444	NM_001123385.1	1164	Cga/Tga																																																																														
STK11	6794	MSKCC	GRCh37	19	1221236	1221236	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	58	476	0	ENST00000326873.7:c.762del	p.Phe255SerfsTer32	p.F255Sfs*32	ENST00000326873	NM_000455.4	253	taC/ta																																																																														
RARA	5914	MSKCC	GRCh37	17	38487541	38487541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	51	437	1	ENST00000254066.5:c.71A>G	p.Tyr24Cys	p.Y24C	ENST00000254066	NM_000964.3	24	tAc/tGc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652202	36652203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	61	496	0	ENST00000244741.5:c.325dup	p.Asp109GlyfsTer20	p.D109Gfs*20	ENST00000244741	NM_000389.4	108	-/G																																																																														
SPEN	23013	MSKCC	GRCh37	1	16265348	16265348	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746234410		P-0043612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	84	399	0	ENST00000375759.3:c.10840G>A	p.Val3614Ile	p.V3614I	ENST00000375759	NM_015001.2	3614	Gtt/Att																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0043612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	147	441	1	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876658468		P-0043612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	115	439	0	ENST00000269305.4:c.577C>A	p.His193Asn	p.H193N	ENST00000269305	NM_001126112.2	193	Cat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0043612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	44	271	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0043612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	44	271	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729681	162729681	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	75	399	0	ENST00000367921.3:c.767A>G	p.Tyr256Cys	p.Y256C	ENST00000367921	NM_006182.2	256	tAt/tGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913361		P-0043628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	18	388	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133226321	133226321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750902578		P-0043628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	53	1005	1	ENST00000320574.5:c.3737C>T	p.Thr1246Met	p.T1246M	ENST00000320574	NM_006231.2	1246	aCg/aTg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793364	242793364	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1298132910		P-0043628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	56	1104	1	ENST00000334409.5:c.713C>A	p.Pro238His	p.P238H	ENST00000334409	NM_005018.2	238	cCc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70342357	70342357	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0043628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	34	296	0	ENST00000374080.3:c.1249-1G>T		p.X417_splice	ENST00000374080		417																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55152104	55152104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121908588		P-0043673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	341	720	0	ENST00000257290.5:c.2536G>T	p.Asp846Tyr	p.D846Y	ENST00000257290	NM_006206.4	846	Gat/Tat																																																																														
RIT1	6016	MSKCC	GRCh37	1	155880288	155880288	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	34	348	0	ENST00000368323.3:c.116T>A	p.Met39Lys	p.M39K	ENST00000368323	NM_006912.5	39	aTg/aAg																																																																														
PARP1	142	MSKCC	GRCh37	1	226567635	226567635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	61	447	0	ENST00000366794.5:c.1531G>T	p.Val511Phe	p.V511F	ENST00000366794	NM_001618.3	511	Gtc/Ttc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793370	18793370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	118	321	0	ENST00000266497.5:c.4067C>A	p.Pro1356Gln	p.P1356Q	ENST00000266497		1356	cCa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	179	280	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MGA	23269	MSKCC	GRCh37	15	42019455	42019455	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	28	523	0	ENST00000219905.7:c.3508G>T	p.Glu1170Ter	p.E1170*	ENST00000219905	NM_001164273.1	1170	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	50	833	0	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg																																																																														
INSR	3643	MSKCC	GRCh37	19	7172442	7172442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	31	388	0	ENST00000302850.5:c.1127A>G	p.Asn376Ser	p.N376S	ENST00000302850	NM_000208.2	376	aAt/aGt																																																																														
ALK	238	MSKCC	GRCh37	2	29551252	29551252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	46	568	0	ENST00000389048.3:c.1378G>T	p.Asp460Tyr	p.D460Y	ENST00000389048	NM_004304.4	460	Gac/Tac																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42840337	42840337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	27	377	0	ENST00000398585.3:c.1411G>T	p.Val471Phe	p.V471F	ENST00000398585	NM_001135099.1	471	Gtc/Ttc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160566	56160566	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs925876038		P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	26	200	0	ENST00000399503.3:c.840G>C	p.Gln280His	p.Q280H	ENST00000399503	NM_005921.1	280	caG/caC																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730091	41730091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	26	400	0	ENST00000242208.4:c.438C>A	p.Asp146Glu	p.D146E	ENST00000242208	NM_002192.2	146	gaC/gaA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515231	106515231	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	34	269	0	ENST00000359195.3:c.2374A>T	p.Lys792Ter	p.K792*	ENST00000359195	NM_002649.2	792	Aaa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	30	375	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	30	375	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	30	375	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	41	755	0	ENST00000329236.7:c.1459+1G>T		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																															
MED12	9968	MSKCC	GRCh37	X	70356759	70356759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	33	641	1	ENST00000374080.3:c.5431C>A	p.Pro1811Thr	p.P1811T	ENST00000374080		1811	Cct/Act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	370	347	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577098	7577098	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	287	634	0	ENST00000269305.4:c.840A>T	p.Arg280Ser	p.R280S	ENST00000269305	NM_001126112.2	280	agA/agT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106424	27106424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	115	492	0	ENST00000324856.7:c.6035G>A	p.Gly2012Asp	p.G2012D	ENST00000324856	NM_006015.4	2012	gGc/gAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860150	57860151	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	230	558	0	ENST00000228682.2:c.891_892del	p.Lys299AlafsTer7	p.K299Afs*7	ENST00000228682	NM_005269.2	297	gGC/g																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375523	40375523	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	319	553	0	ENST00000293328.3:c.427C>T	p.Gln143Ter	p.Q143*	ENST00000293328	NM_012448.3	143	Cag/Tag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688810	47688810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	194	303	1	ENST00000347630.2:c.490G>A	p.Val164Met	p.V164M	ENST00000347630	NM_001007230.1	164	Gtg/Atg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119803	70119803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	116	519	1	ENST00000245479.2:c.805G>A	p.Asp269Asn	p.D269N	ENST00000245479	NM_000346.3	269	Gac/Aac																																																																														
SDHA	6389	MSKCC	GRCh37	5	240505	240505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	25	66	0	ENST00000264932.6:c.1465G>C	p.Gly489Arg	p.G489R	ENST00000264932	NM_004168.2	489	Ggg/Cgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	512	815	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0043843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	244	411	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023917	27023917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	110	71	0	ENST00000324856.7:c.1024del	p.Ala342ArgfsTer21	p.A342Rfs*21	ENST00000324856	NM_006015.4	341	gcG/gc																																																																														
KIT	3815	MSKCC	GRCh37	4	55592080	55592081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	329	528	0	ENST00000288135.5:c.1407dup	p.Gly470TrpfsTer12	p.G470Wfs*12	ENST00000288135	NM_000222.2	468	-/T																																																																														
APC	324	MSKCC	GRCh37	5	112175606	112175607	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTCCA			P-0043843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	160	373	0	ENST00000257430.4:c.4317_4321dup	p.Pro1441LeufsTer34	p.P1441Lfs*34	ENST00000257430	NM_000038.5	1439	cct/cCTCCAct																																																																														
RBM10	8241	MSKCC	GRCh37	X	47035986	47035986	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0043843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	586	432	0	ENST00000329236.7:c.432+1G>A		p.X144_splice	ENST00000329236	NM_001204466.1	144																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	90	283	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	279	539	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	44	316	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231437	46231437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	86	307	0	ENST00000334344.6:c.1277C>T	p.Thr426Met	p.T426M	ENST00000334344	NM_152641.2	426	aCg/aTg																																																																														
B2M	567	MSKCC	GRCh37	15	45007834	45007834	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	109	313	0	ENST00000558401.1:c.285del	p.Asp96MetfsTer7	p.D96Mfs*7	ENST00000558401	NM_004048.2	94	gAa/ga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs540521894		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	153	683	2	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649640	206649640	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782100237		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	151	601	0	ENST00000367120.3:c.475G>A	p.Gly159Ser	p.G159S	ENST00000367120	NM_014002.3	159	Ggc/Agc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	34	189	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434545	121434545	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1343874863		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	159	682	0	ENST00000257555.6:c.1309G>A	p.Gly437Ser	p.G437S	ENST00000257555		437	Ggc/Agc																																																																														
TET2	54790	MSKCC	GRCh37	4	106197506	106197506	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	33	308	0	ENST00000380013.4:c.5844del	p.Val1949Ter	p.V1949*	ENST00000380013	NM_001127208.2	1947	Aaa/aa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	163	642	2	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	151	579	1	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	31	271	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939417	76939417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781932965		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	88	562	0	ENST00000373344.5:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000373344	NM_000489.3	444	cGa/cAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099332	157099333	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA	rs780268024		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	26	249	0	ENST00000346085.5:c.285_287dup	p.His96dup	p.H96dup	ENST00000346085	NM_020732.3	96	gcc/gcCCAc																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872461	35872461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	111	518	1	ENST00000216797.5:c.442del	p.Leu148TyrfsTer16	p.L148Yfs*16	ENST00000216797	NM_020529.2	148	Cta/ta																																																																														
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	108	310	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	130	410	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	122	509	3	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226253371	226253371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	81	189	0	ENST00000366813.1:c.143C>T	p.Ala48Val	p.A48V	ENST00000366813		48	gCg/gTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106197443	106197443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1452689450		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	68	292	1	ENST00000380013.4:c.5776C>T	p.Arg1926Cys	p.R1926C	ENST00000380013	NM_001127208.2	1926	Cgt/Tgt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400212	139400212	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	121	572	0	ENST00000277541.6:c.4136del	p.Thr1379ArgfsTer66	p.T1379Rfs*66	ENST00000277541	NM_017617.3	1379	aCg/ag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954273	32954273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1253685848		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	104	350	0	ENST00000380152.3:c.9253del	p.Thr3085GlnfsTer19	p.T3085Qfs*19	ENST00000380152		3083	Aaa/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023831	27023831	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1415214478		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	44	215	2	ENST00000324856.7:c.941del	p.Gly314AlafsTer49	p.G314Afs*49	ENST00000324856	NM_006015.4	313	Ggg/gg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214706	5214706	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1457749790		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	58	566	0	ENST00000357368.4:c.4360G>A	p.Gly1454Ser	p.G1454S	ENST00000357368	NM_002850.3	1454	Ggc/Agc																																																																														
CDH1	999	MSKCC	GRCh37	16	68862157	68862157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776975632		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	116	506	1	ENST00000261769.5:c.2245C>T	p.Arg749Trp	p.R749W	ENST00000261769	NM_004360.3	749	Cgg/Tgg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	169	443	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096133	2096133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1041413378		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	139	527	0	ENST00000219066.1:c.374del	p.Pro125GlnfsTer12	p.P125Qfs*12	ENST00000219066	NM_002528.5	125	cCa/ca																																																																														
IDH1	3417	MSKCC	GRCh37	2	209116173	209116173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781398075		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	114	255	0	ENST00000345146.2:c.103G>A	p.Val35Met	p.V35M	ENST00000345146	NM_005896.2	35	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	153	669	5	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166014	118166014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	119	378	2	ENST00000369448.3:c.524G>A	p.Arg175His	p.R175H	ENST00000369448	NM_017709.3	175	cGt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223328	36223328	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	153	714	2	ENST00000222270.7:c.5882del	p.Pro1961LeufsTer26	p.P1961Lfs*26	ENST00000222270	NM_014727.1	1960	Ccc/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435279	49435279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181521514		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	167	617	1	ENST00000301067.7:c.6274G>A	p.Asp2092Asn	p.D2092N	ENST00000301067	NM_003482.3	2092	Gac/Aac																																																																														
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	102	585	1	ENST00000380036.4:c.1250del	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																														
FLT1	2321	MSKCC	GRCh37	13	28896488	28896488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376257265		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	51	339	0	ENST00000282397.4:c.2962G>A	p.Gly988Ser	p.G988S	ENST00000282397	NM_002019.4	988	Ggt/Agt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522590	176522590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765924274		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	137	576	1	ENST00000292408.4:c.1687C>T	p.Arg563Trp	p.R563W	ENST00000292408	NM_213647.1	563	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518270	8518270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556357771		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	86	293	1	ENST00000356435.5:c.1121C>T	p.Ala374Val	p.A374V	ENST00000356435		374	gCg/gTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210704	5210704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766174955		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	131	562	0	ENST00000357368.4:c.5347C>T	p.Arg1783Trp	p.R1783W	ENST00000357368	NM_002850.3	1783	Cgg/Tgg																																																																														
CIC	23152	MSKCC	GRCh37	19	42798428	42798428	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	39	650	1	ENST00000575354.2:c.4303del	p.Asp1435ThrfsTer19	p.D1435Tfs*19	ENST00000575354	NM_015125.3	1433	gaG/ga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243502	41243502	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80357345		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	139	544	2	ENST00000357654.3:c.4046C>T	p.Thr1349Met	p.T1349M	ENST00000357654	NM_007294.3	1349	aCg/aTg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741475	17741475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769475374		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	53	433	1	ENST00000250003.3:c.146G>A	p.Arg49His	p.R49H	ENST00000250003	NM_002478.4	49	cGc/cAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98221972	98221972	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373120584		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	118	444	0	ENST00000331920.6:c.2797G>A	p.Ala933Thr	p.A933T	ENST00000331920	NM_000264.3	933	Gcg/Acg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566042	141566042	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1460562478		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	115	437	0	ENST00000220592.5:c.1222G>A	p.Val408Met	p.V408M	ENST00000220592	NM_012154.3	408	Gtg/Atg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31464401	31464401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	168	598	1	ENST00000344624.3:c.2516C>T	p.Thr839Met	p.T839M	ENST00000344624		839	aCg/aTg																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319093	62319093	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs786205700		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	154	657	0	ENST00000482936.1:c.1451C>T	p.Pro484Leu	p.P484L	ENST00000482936		484	cCg/cTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29652947	29652947	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770124316		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	112	332	0	ENST00000358273.4:c.4945G>A	p.Gly1649Arg	p.G1649R	ENST00000358273	NM_001042492.2	1649	Ggg/Agg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789582	3789582	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145988918		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	88	359	0	ENST00000262367.5:c.4277C>T	p.Thr1426Met	p.T1426M	ENST00000262367	NM_004380.2	1426	aCg/aTg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191229	185191229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	114	415	0	ENST00000265026.3:c.2110G>A	p.Ala704Thr	p.A704T	ENST00000265026	NM_004721.4	704	Gct/Act																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880980	134880980	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771555643		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	130	469	0	ENST00000398015.3:c.1543G>A	p.Gly515Ser	p.G515S	ENST00000398015	NM_004441.4	515	Ggc/Agc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120094	70120094	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	14	41	1	ENST00000245479.2:c.1100del	p.Pro367HisfsTer16	p.P367Hfs*16	ENST00000245479	NM_000346.3	366	Ccc/cc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23614974	23614974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757118000		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	35	345	0	ENST00000261584.4:c.3367G>A	p.Val1123Met	p.V1123M	ENST00000261584	NM_024675.3	1123	Gtg/Atg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41199717	41199717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	133	517	0	ENST00000357654.3:c.5410G>A	p.Val1804Ile	p.V1804I	ENST00000357654	NM_007294.3	1804	Gtc/Atc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435309	110435309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	56	145	1	ENST00000375856.3:c.3092C>T	p.Pro1031Leu	p.P1031L	ENST00000375856	NM_003749.2	1031	cCg/cTg																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345989	152345989	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775565256		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	121	404	0	ENST00000359321.1:c.581C>T	p.Thr194Met	p.T194M	ENST00000359321	NM_005431.1	194	aCg/aTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701243	43701243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769912966		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	108	481	0	ENST00000382044.4:c.5452C>T	p.Arg1818Trp	p.R1818W	ENST00000382044	NM_001141980.1	1818	Cgg/Tgg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246091262	246091262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	53	420	2	ENST00000388985.4:c.673G>A	p.Ala225Thr	p.A225T	ENST00000388985		225	Gca/Aca																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945420	71945420	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	149	541	0	ENST00000298229.2:c.2308T>C	p.Tyr770His	p.Y770H	ENST00000298229	NM_001567.3	770	Tac/Cac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118363829	118363830	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	131	445	0	ENST00000534358.1:c.5067dup	p.Glu1690ArgfsTer4	p.E1690Rfs*4	ENST00000534358	NM_005933.3	1688	tcc/tCcc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50481152	50481152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	57	313	1	ENST00000394963.4:c.538C>T	p.Arg180Trp	p.R180W	ENST00000394963	NM_003076.4	180	Cgg/Tgg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107968	30107968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757900101		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	144	495	1	ENST00000331968.5:c.839G>A	p.Arg280Gln	p.R280Q	ENST00000331968	NM_002742.2	280	cGg/cAg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371693	89371693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	150	650	0	ENST00000301030.4:c.147G>T	p.Lys49Asn	p.K49N	ENST00000301030	NM_001256183.1	49	aaG/aaT																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882978	89882978	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs943773590		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	38	146	0	ENST00000389301.3:c.46G>A	p.Gly16Arg	p.G16R	ENST00000389301	NM_000135.2	16	Ggg/Agg																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110899	8110899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756175507		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	148	536	2	ENST00000585124.1:c.196G>A	p.Asp66Asn	p.D66N	ENST00000585124	NM_004217.3	66	Gac/Aac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884146	37884146	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	102	589	0	ENST00000269571.5:c.3617A>G	p.Gln1206Arg	p.Q1206R	ENST00000269571		1206	cAg/cGg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492691	56492694	+	frameshift_variant	Frame_Shift_Del	DEL	ATTA	ATTA	-			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	248	335	0	ENST00000407977.2:c.245_248del	p.Leu82CysfsTer75	p.L82Cfs*75	ENST00000407977		82	tTAATg/tg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63530041	63530041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	269	349	0	ENST00000307078.5:c.2394G>T	p.Lys798Asn	p.K798N	ENST00000307078	NM_004655.3	798	aaG/aaT																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622192	1622192	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	91	578	0	ENST00000344749.5:c.683G>A	p.Trp228Ter	p.W228*	ENST00000344749	NM_001136139.2	228	tGg/tAg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375321	15375321	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1475673288		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	84	550	0	ENST00000263377.2:c.1106A>G	p.His369Arg	p.H369R	ENST00000263377	NM_058243.2	369	cAc/cGc																																																																														
ALK	238	MSKCC	GRCh37	2	29445454	29445454	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	48	492	0	ENST00000389048.3:c.3379T>A	p.Phe1127Ile	p.F1127I	ENST00000389048	NM_004304.4	1127	Ttt/Att																																																																														
MSH2	4436	MSKCC	GRCh37	2	47643538	47643538	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587779067		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	138	443	0	ENST00000233146.2:c.1046C>G	p.Pro349Arg	p.P349R	ENST00000233146	NM_000251.2	349	cCt/cGt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61710179	61710181	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1164883486		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	98	295	0	ENST00000401558.2:c.2723_2725del	p.Glu908del	p.E908del	ENST00000401558	NM_003400.3	908	gAAGct/gct																																																																														
FAM175A	0	MSKCC	GRCh37	4	84390197	84390197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	54	338	0	ENST00000321945.7:c.584T>C	p.Val195Ala	p.V195A	ENST00000321945	NM_139076.2	195	gTa/gCa																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99850060	99850060	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1299361080		P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	37	569	0	ENST00000280892.6:c.64A>G	p.Ser22Gly	p.S22G	ENST00000280892	NM_001130678.1	22	Agc/Ggc																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858208	27858208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	115	463	0	ENST00000359303.2:c.363G>A	p.Met121Ile	p.M121I	ENST00000359303	NM_003535.2	121	atG/atA																																																																														
AGO2	27161	MSKCC	GRCh37	8	141559308	141559309	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	148	549	0	ENST00000220592.5:c.1492dup	p.Ala498GlyfsTer176	p.A498Gfs*176	ENST00000220592	NM_012154.3	498	gcg/gGcg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517865	8517865	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	74	248	0	ENST00000356435.5:c.1526T>C	p.Val509Ala	p.V509A	ENST00000356435		509	gTc/gCc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044906	47044907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	110	699	0	ENST00000329236.7:c.2003dup	p.Glu670Ter	p.E670*	ENST00000329236	NM_001204466.1	666	-/G																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177866	56177869	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	GAG			P-0043907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	96	345	1	ENST00000399503.3:c.2839_2842delinsGAG	p.Thr947GlufsTer21	p.T947Efs*21	ENST00000399503	NM_005921.1	947	ACAAca/GAGca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	64	274	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	251	833	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121082	11121082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	211	621	0	ENST00000344626.4:c.2149G>T	p.Glu717Ter	p.E717*	ENST00000344626	NM_003072.3	717	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76890135	76890135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	81	454	0	ENST00000373344.5:c.4759G>T	p.Gly1587Cys	p.G1587C	ENST00000373344	NM_000489.3	1587	Ggt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105841	27105841	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	45	494	0	ENST00000324856.7:c.5452C>G	p.Gln1818Glu	p.Q1818E	ENST00000324856	NM_006015.4	1818	Cag/Gag																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39321574	39321574	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs779725644		P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	27	271	0	ENST00000373001.3:c.447C>G	p.Asp149Glu	p.D149E	ENST00000373001	NM_022157.3	149	gaC/gaG																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14303232	14303232	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	56	540	0	ENST00000256196.4:c.443A>G	p.Gln148Arg	p.Q148R	ENST00000256196		148	cAg/cGg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913075	32913075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	87	445	0	ENST00000380152.3:c.4583G>T	p.Ser1528Ile	p.S1528I	ENST00000380152		1528	aGc/aTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435010	110435010	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	129	745	0	ENST00000375856.3:c.3391C>G	p.Arg1131Gly	p.R1131G	ENST00000375856	NM_003749.2	1131	Cgc/Ggc																																																																														
NF1	4763	MSKCC	GRCh37	17	29663667	29663667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	26	233	0	ENST00000358273.4:c.6162G>A	p.Met2054Ile	p.M2054I	ENST00000358273	NM_001042492.2	2054	atG/atA																																																																														
CASP8	841	MSKCC	GRCh37	2	202149735	202149735	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	90	544	0	ENST00000358485.4:c.1176C>G	p.Ile392Met	p.I392M	ENST00000358485	NM_001080125.1	392	atC/atG																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71037198	71037198	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	81	370	0	ENST00000318789.4:c.1093A>C	p.Met365Leu	p.M365L	ENST00000318789	NM_032682.5	365	Atg/Ctg																																																																														
ATR	545	MSKCC	GRCh37	3	142177942	142177942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	21	281	0	ENST00000350721.4:c.7361G>T	p.Arg2454Ile	p.R2454I	ENST00000350721	NM_001184.3	2454	aGa/aTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76875958	76875958	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	55	249	0	ENST00000373344.5:c.5177A>T	p.Asn1726Ile	p.N1726I	ENST00000373344	NM_000489.3	1726	aAt/aTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	41	356	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771658	135771658	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	39	495	0	ENST00000298552.3:c.3459C>G	p.Ile1153Met	p.I1153M	ENST00000298552	NM_001162426.1	1153	atC/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0043944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	28	466	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133202815	133202815	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	38	506	0	ENST00000320574.5:c.6419A>T	p.Glu2140Val	p.E2140V	ENST00000320574	NM_006231.2	2140	gAg/gTg																																																																														
VHL	7428	MSKCC	GRCh37	3	10191503	10191503	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs104893825		P-0043944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	16	361	0	ENST00000256474.2:c.496G>T	p.Val166Phe	p.V166F	ENST00000256474	NM_000551.3	166	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	604	563	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489514	40489514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	620	526	3	ENST00000264657.5:c.736C>G	p.Arg246Gly	p.R246G	ENST00000264657	NM_139276.2	246	Cgg/Ggg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864221	117864221	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	261	419	0	ENST00000297338.2:c.1436A>C	p.Lys479Thr	p.K479T	ENST00000297338	NM_006265.2	479	aAa/aCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	47	358	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220469	1220469	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	125	646	0	ENST00000326873.7:c.563del	p.Gly188AlafsTer99	p.G188Afs*99	ENST00000326873	NM_000455.4	188	Ggc/gc																																																																														
CDK6	1021	MSKCC	GRCh37	7	92247520	92247520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs902137115		P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	53	265	0	ENST00000265734.4:c.700G>A	p.Val234Met	p.V234M	ENST00000265734	NM_001259.6	234	Gtg/Atg																																																																														
ATM	472	MSKCC	GRCh37	11	108127041	108127041	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	60	386	0	ENST00000278616.4:c.2224A>T	p.Lys742Ter	p.K742*	ENST00000278616	NM_000051.3	742	Aag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654655	67654655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	101	473	1	ENST00000264010.4:c.1142G>T	p.Cys381Phe	p.C381F	ENST00000264010	NM_006565.3	381	tGc/tTc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610368	10610369	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	175	784	1	ENST00000171111.5:c.341_342delinsTT	p.Gly114Val	p.G114V	ENST00000171111	NM_203500.1	114	gGG/gTT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187515	32187515	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1470084434		P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	154	725	0	ENST00000375023.3:c.1364C>T	p.Thr455Ile	p.T455I	ENST00000375023	NM_004557.3	455	aCt/aTt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956969	2956969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	114	707	2	ENST00000396946.4:c.2658C>A	p.Ser886Arg	p.S886R	ENST00000396946	NM_032415.4	886	agC/agA																																																																														
LYN	4067	MSKCC	GRCh37	8	56912096	56912096	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	99	513	0	ENST00000519728.1:c.1324A>G	p.Ile442Val	p.I442V	ENST00000519728	NM_002350.3	442	Att/Gtt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038821	47038821	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	154	780	1	ENST00000329236.7:c.597C>A	p.Tyr199Ter	p.Y199*	ENST00000329236	NM_001204466.1	199	taC/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	47	230	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876658468		P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	54	417	0	ENST00000269305.4:c.577C>G	p.His193Asp	p.H193D	ENST00000269305	NM_001126112.2	193	Cat/Gat																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115931	8115931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	52	331	0	ENST00000346208.3:c.1277C>G	p.Ser426Cys	p.S426C	ENST00000346208		426	tCc/tGc																																																																														
RET	5979	MSKCC	GRCh37	10	43596043	43596043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	68	453	0	ENST00000355710.3:c.210G>T	p.Gln70His	p.Q70H	ENST00000355710	NM_020975.4	70	caG/caT																																																																														
ATM	472	MSKCC	GRCh37	11	108137938	108137938	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	51	268	0	ENST00000278616.4:c.2507A>T	p.Glu836Val	p.E836V	ENST00000278616	NM_000051.3	836	gAa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447392	49447392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	83	483	0	ENST00000301067.7:c.706G>C	p.Gly236Arg	p.G236R	ENST00000301067	NM_003482.3	236	Ggg/Cgg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88428923	88428923	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	45	280	0	ENST00000360948.2:c.2175+2T>A		p.X725_splice	ENST00000360948	NM_001012338.2	725																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992747	72992747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	84	464	0	ENST00000268489.5:c.1298G>T	p.Gly433Val	p.G433V	ENST00000268489	NM_006885.3	433	gGc/gTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223301	36223301	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	38	702	0	ENST00000222270.7:c.5851C>G	p.Leu1951Val	p.L1951V	ENST00000222270	NM_014727.1	1951	Ctc/Gtc																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139896	50139896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	88	573	0	ENST00000246792.3:c.433G>A	p.Asp145Asn	p.D145N	ENST00000246792	NM_006270.3	145	Gat/Aat																																																																														
PARK2	0	MSKCC	GRCh37	6	162683635	162683635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	46	327	2	ENST00000366898.1:c.334C>T	p.Leu112Phe	p.L112F	ENST00000366898	NM_004562.2	112	Ctc/Ttc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1325339	1325339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	36	279	0	ENST00000381566.1:c.336G>T	p.Trp112Cys	p.W112C	ENST00000381566		112	tgG/tgT																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	133	294	0	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771827	135771827	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs118203750		P-0044018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	140	514	0	ENST00000298552.3:c.3290G>A	p.Arg1097His	p.R1097H	ENST00000298552	NM_001162426.1	1097	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs878854073		P-0044018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	102	385	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
PAK7	0	MSKCC	GRCh37	20	9546574	9546574	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs991533102		P-0044018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	94	379	1	ENST00000353224.5:c.1448G>A	p.Arg483Gln	p.R483Q	ENST00000353224	NM_177990.2	483	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	189	607	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602872	10602872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	174	855	0	ENST00000171111.5:c.706G>A	p.Asp236Asn	p.D236N	ENST00000171111	NM_203500.1	236	Gac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112136975	112136975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	30	258	0	ENST00000257430.4:c.730-1G>C		p.X244_splice	ENST00000257430	NM_000038.5	244																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247174	153247174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	14	238	0	ENST00000281708.4:c.1628G>C	p.Arg543Thr	p.R543T	ENST00000281708	NM_033632.3	543	aGa/aCa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075404	8075404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	33	257	0	ENST00000377482.5:c.166C>G	p.Leu56Val	p.L56V	ENST00000377482	NM_018948.3	56	Ctg/Gtg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246099	41246099	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	11	507	0	ENST00000357654.3:c.1449A>G	p.Ile483Met	p.I483M	ENST00000357654	NM_007294.3	483	atA/atG																																																																														
AXL	558	MSKCC	GRCh37	19	41744488	41744488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	125	762	0	ENST00000301178.4:c.1108G>T	p.Ala370Ser	p.A370S	ENST00000301178	NM_021913.4	370	Gcg/Tcg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139794970	139794970	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	106	520	0	ENST00000247668.2:c.364G>A	p.Glu122Lys	p.E122K	ENST00000247668	NM_021138.3	122	Gag/Aag																																																																														
KIT	3815	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913512		P-0044022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	795	361	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa																																																																														
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0044032-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			102	228	558	0	ENST00000397752.3:c.3028+2del		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504279	8504279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753412640		P-0044032-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	45	413	0	ENST00000356435.5:c.1804G>A	p.Ala602Thr	p.A602T	ENST00000356435		602	Gct/Act																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123256213	123256213	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044032-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	81	428	0	ENST00000358487.5:c.1696T>A	p.Tyr566Asn	p.Y566N	ENST00000358487	NM_000141.4	566	Tat/Aat																																																																														
CCNE1	898	MSKCC	GRCh37	19	30312716	30312716	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044032-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	66	461	0	ENST00000262643.3:c.697A>T	p.Ile233Phe	p.I233F	ENST00000262643	NM_001238.2	233	Att/Ttt																																																																														
TET2	54790	MSKCC	GRCh37	4	106156087	106156087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044032-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	52	304	0	ENST00000380013.4:c.988G>C	p.Glu330Gln	p.E330Q	ENST00000380013	NM_001127208.2	330	Gag/Cag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	306	583	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	201	457	2	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
ATM	472	MSKCC	GRCh37	11	108175549	108175549	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204433		P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	155	407	1	ENST00000278616.4:c.5644C>T	p.Arg1882Ter	p.R1882*	ENST00000278616	NM_000051.3	1882	Cga/Tga																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570326	95570326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	145	312	0	ENST00000343455.3:c.3407G>T	p.Gly1136Val	p.G1136V	ENST00000343455	NM_177438.2	1136	gGt/gTt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983283	15983284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATAGAGC			P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	60	371	0	ENST00000268712.3:c.3488_3495dup	p.Thr1166AlafsTer21	p.T1166Afs*21	ENST00000268712	NM_006311.3	1165	-/GCTCTATC																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539205	187539205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	65	404	0	ENST00000441802.2:c.8535G>C	p.Met2845Ile	p.M2845I	ENST00000441802	NM_005245.3	2845	atG/atC																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207500	29207500	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs757228799		P-0044064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	121	450	0	ENST00000240100.2:c.296C>G	p.Ser99Cys	p.S99C	ENST00000240100	NM_001394.6	99	tCc/tGc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593582	55593597	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	AAACCCATGTATGAAG	AAACCCATGTATGAAG	T			P-0044076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	174	327	0	ENST00000288135.5:c.1648_1663delinsT	p.Lys550_Val555delinsLeu	p.K550_V555delinsL	ENST00000288135	NM_000222.2	550	AAACCCATGTATGAAGta/Tta																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437175	110437175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs920062261		P-0044076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	19	10	0	ENST00000375856.3:c.1226G>A	p.Cys409Tyr	p.C409Y	ENST00000375856	NM_003749.2	409	tGc/tAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42053980	42053980	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	183	319	0	ENST00000219905.7:c.7442T>A	p.Leu2481Ter	p.L2481*	ENST00000219905	NM_001164273.1	2481	tTg/tAg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681130	37681130	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	280	476	0	ENST00000447079.4:c.3299A>T	p.Asp1100Val	p.D1100V	ENST00000447079	NM_015083.1	1100	gAt/gTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	55	407	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	164	441	1				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	244	409	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199469669		P-0044148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	398	613	1	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs121913292		P-0044148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	251	514	0	ENST00000371953.3:c.389del	p.Arg130GlnfsTer4	p.R130Qfs*4	ENST00000371953	NM_000314.4	130	cGa/ca																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259047	89259047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	143	270	0	ENST00000336596.2:c.191C>T	p.Pro64Leu	p.P64L	ENST00000336596	NM_005233.5	64	cCc/cTc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440924	52440924	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	281	630	0	ENST00000460680.1:c.581-1G>A		p.X194_splice	ENST00000460680	NM_004656.3	194																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78444612	78444629	+	inframe_deletion	In_Frame_Del	DEL	CCTCCACCACCACCGCCG	CCTCCACCACCACCGCCG	-			P-0044148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	270	416	0	ENST00000370768.2:c.60_77del	p.Gly21_Gly26del	p.G21_G26del	ENST00000370768	NM_003902.3	20	ggCGGCGGTGGTGGTGGAGGa/gga																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117690387	117690387	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1289431844		P-0044148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	296	511	0	ENST00000369458.3:c.742C>T	p.Arg248Trp	p.R248W	ENST00000369458	NM_024626.3	248	Cgg/Tgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2193764	2193765	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0044148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	302	673	1	ENST00000398665.3:c.570_571delinsTT	p.Pro191Ser	p.P191S	ENST00000398665	NM_032482.2	190	atCCcg/atTTcg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264097	46264097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	182	327	0	ENST00000371998.3:c.1144C>G	p.Pro382Ala	p.P382A	ENST00000371998		382	Cct/Gct																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910576	29910576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199474361		P-0044148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	279	380	0	ENST00000376809.5:c.116C>T	p.Pro39Leu	p.P39L	ENST00000376809	NM_002116.7	39	cCc/cTc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797519	45797519	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	85	702	0	ENST00000372115.3:c.958C>T	p.Pro320Ser	p.P320S	ENST00000372115	NM_001048171.1	320	Ccc/Tcc																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733608	85733608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	90	437	0	ENST00000370580.1:c.404G>T	p.Arg135Ile	p.R135I	ENST00000370580	NM_003921.4	135	aGa/aTa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154380	2154380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1191719522		P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	93	771	0	ENST00000434045.2:c.548G>A	p.Arg183His	p.R183H	ENST00000434045	NM_001127598.1	183	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	87	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602662	10602662	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1457377196		P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	181	719	0	ENST00000171111.5:c.916G>T	p.Glu306Ter	p.E306*	ENST00000171111	NM_203500.1	306	Gag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70342587	70342587	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	109	531	0	ENST00000374080.3:c.1349-1G>T		p.X450_splice	ENST00000374080		450																																																																															
SH2D1A	4068	MSKCC	GRCh37	X	123499636	123499637	+	missense_variant	Missense_Mutation	DNP	CG	CG	AT			P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	127	537	2	ENST00000371139.4:c.163_164delinsAT	p.Arg55Ile	p.R55I	ENST00000371139	NM_001114937.2	55	CGa/ATa																																																																														
FAM58A	0	MSKCC	GRCh37	X	152861629	152861629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	40	625	0	ENST00000406277.2:c.123G>A	p.Met41Ile	p.M41I	ENST00000406277	NM_152274.4	41	atG/atA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133483	55133483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	284	351	0	ENST00000257290.5:c.787G>T	p.Glu263Ter	p.E263*	ENST00000257290	NM_006206.4	263	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	49039399	49039399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	81	483	0	ENST00000267163.4:c.2384C>T	p.Ser795Leu	p.S795L	ENST00000267163	NM_000321.2	795	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	231	387	1	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	587	578	1	ENST00000269305.4:c.472del	p.Arg158AlafsTer12	p.R158Afs*12	ENST00000269305	NM_001126112.2	158	Cgc/gc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350431	89350431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	198	642	0	ENST00000301030.4:c.2519G>T	p.Arg840Leu	p.R840L	ENST00000301030	NM_001256183.1	840	cGg/cTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76845358	76845358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	112	113	0	ENST00000373344.5:c.6163G>T	p.Glu2055Ter	p.E2055*	ENST00000373344	NM_000489.3	2055	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	49038250	49039272	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATGAGTCATAGAACATTAGATATTCTTTGAAGTTATTTTTATTACTTTATAGGAAAAGCCAGTATAAATGCAGCCTTGCAAATCAATAATACAAATGTTCAGTATAAACACATTTTGTGTTTCCGGTTTACCTTCCCTTTAGAGAAATAGTAGTAGTAAAATATACTTGGTATGACACATTTCATATTGTTCTGTGGAAAGTGAGTTGAGGGGTATTTTTCCCATTTATTATTGGAGTTTTCAAAAGTAATACAAACCAAGTCATTTTTGTTTGTATGTTTGAAGTTATTTTCTAAATTCAATCATTTTAATTGTATATATCAGAGGCATCTGATATAACCTCTGTGTTTTTCCCTAAAATTTGAGTGAAATCTAACTATCACTAAAATATAGTGCTTTTACTAAATGTCTACTTCTTGCAATTGCGTAATGTATACTGAAACCCTTATAGATTGGGGGGGATACCGGGAGGTACAGGCCAGAGAATGTAGTCCAAATATTGGTGGATAATATTATTGGCTTTCGCTCAGCTCTGGCCCTTTGATTCCCATCATGCTTTCCATTCTACCAGTCTATCTACTCCTCTCTTCCCAGTCTATATACTCTTCTCTTCTTGGATGGCCAGCTCTTCCATCTGCTGCTGCCTGGCTATTTCTCTCAATCATTCTGTGACATTTCACTTCTAGAAGAGCAGCTATAATCCAAGCCTAAGAAGTAATTTTATTTATTTATTATTTTTTCCTTTATAATATGTGCTTCTTACCAGTCAAAAAGTATTATAAACTATTAGAAAAGAAAATCTAAAGGTAGAAATTTTAAAATTCATTTAACAAGTAAATTTTACTTTTTTTTTTTTTTTTTTTTTTTTACTGTTCTTCCTCAGACATTCAAACGTGTTTTGATCAAAGAAGAGGAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTCATGCAGAGACTGAAAACAAATATTTTGCAGTATGCTTCCACCAGGGTAGGTCAAAAGTATCCTTTGATTG	CATGAGTCATAGAACATTAGATATTCTTTGAAGTTATTTTTATTACTTTATAGGAAAAGCCAGTATAAATGCAGCCTTGCAAATCAATAATACAAATGTTCAGTATAAACACATTTTGTGTTTCCGGTTTACCTTCCCTTTAGAGAAATAGTAGTAGTAAAATATACTTGGTATGACACATTTCATATTGTTCTGTGGAAAGTGAGTTGAGGGGTATTTTTCCCATTTATTATTGGAGTTTTCAAAAGTAATACAAACCAAGTCATTTTTGTTTGTATGTTTGAAGTTATTTTCTAAATTCAATCATTTTAATTGTATATATCAGAGGCATCTGATATAACCTCTGTGTTTTTCCCTAAAATTTGAGTGAAATCTAACTATCACTAAAATATAGTGCTTTTACTAAATGTCTACTTCTTGCAATTGCGTAATGTATACTGAAACCCTTATAGATTGGGGGGGATACCGGGAGGTACAGGCCAGAGAATGTAGTCCAAATATTGGTGGATAATATTATTGGCTTTCGCTCAGCTCTGGCCCTTTGATTCCCATCATGCTTTCCATTCTACCAGTCTATCTACTCCTCTCTTCCCAGTCTATATACTCTTCTCTTCTTGGATGGCCAGCTCTTCCATCTGCTGCTGCCTGGCTATTTCTCTCAATCATTCTGTGACATTTCACTTCTAGAAGAGCAGCTATAATCCAAGCCTAAGAAGTAATTTTATTTATTTATTATTTTTTCCTTTATAATATGTGCTTCTTACCAGTCAAAAAGTATTATAAACTATTAGAAAAGAAAATCTAAAGGTAGAAATTTTAAAATTCATTTAACAAGTAAATTTTACTTTTTTTTTTTTTTTTTTTTTTTTACTGTTCTTCCTCAGACATTCAAACGTGTTTTGATCAAAGAAGAGGAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTCATGCAGAGACTGAAAACAAATATTTTGCAGTATGCTTCCACCAGGGTAGGTCAAAAGTATCCTTTGATTG	-			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	59	4	0	ENST00000267163.4:c.2211+279_2325+25del		p.X737_splice	ENST00000267163	NM_000321.2	737																																																																															
RB1	5925	MSKCC	GRCh37	13	49039435	49039435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	87	347	0	ENST00000267163.4:c.2420C>T	p.Ser807Leu	p.S807L	ENST00000267163	NM_000321.2	807	tCa/tTa																																																																														
STK11	6794	MSKCC	GRCh37	19	1207086	1207102	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTTACGGCAAGGTGA	CTCTTACGGCAAGGTGA	-			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	483	563	0	ENST00000326873.7:c.174_190del	p.Ser59GlyfsTer98	p.S59Gfs*98	ENST00000326873	NM_000455.4	58	ggCTCTTACGGCAAGGTGAag/ggag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279582	18279582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	181	479	0	ENST00000222254.8:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000222254	NM_005027.3	619	Gaa/Aaa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681650	30681650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	165	347	0	ENST00000376406.3:c.447G>T	p.Glu149Asp	p.E149D	ENST00000376406	NM_014641.2	149	gaG/gaT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170307	32170307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	249	551	0	ENST00000375023.3:c.3301C>A	p.Leu1101Met	p.L1101M	ENST00000375023	NM_004557.3	1101	Ctg/Atg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971289	13971289	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	105	362	0	ENST00000405192.2:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000405192	NM_001163147.1	214	Cag/Tag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090805	5090807	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	AA			P-0044335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	47	256	0	ENST00000381652.3:c.2953_2955delinsAA	p.Glu985LysfsTer13	p.E985Kfs*13	ENST00000381652	NM_004972.3	985	GAG/AA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501191		P-0044387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	282	578	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0044387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	890	539	0	ENST00000275493.2:c.2317_2319dup	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346723	89346723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768819121		P-0044387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	87	508	2	ENST00000301030.4:c.6227C>T	p.Pro2076Leu	p.P2076L	ENST00000301030	NM_001256183.1	2076	cCg/cTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039903	47039903	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0044387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	1110	318	0	ENST00000329236.7:c.1012C>T	p.Gln338Ter	p.Q338*	ENST00000329236	NM_001204466.1	338	Cag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221946	1221946	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0044408-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			184	380	586	0	ENST00000326873.7:c.863-2A>C		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99180014	99180014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044408-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			383	259	553	1	ENST00000074304.5:c.1957G>T	p.Val653Leu	p.V653L	ENST00000074304	NM_001134224.1	653	Gta/Tta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0044441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	2448	190	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0044441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	340	363	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577062	7577062	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	989	667	1	ENST00000269305.4:c.876del	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	292	aaA/aa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162122	47162122	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs537154191		P-0044441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	217	353	0	ENST00000409792.3:c.4004G>A	p.Arg1335His	p.R1335H	ENST00000409792	NM_014159.6	1335	cGt/cAt																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248060	110248060	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	277	336	0	ENST00000374672.4:c.1412T>C	p.Leu471Pro	p.L471P	ENST00000374672	NM_004235.4	471	cTc/cCc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	78	438	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT	rs121913227		P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	86	371	1	ENST00000288602.6:c.1798_1799delinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730859	40730859	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	163	836	0	ENST00000373198.4:c.3676C>T	p.Arg1226Ter	p.R1226*	ENST00000373198	NM_133170.3	1226	Cga/Tga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287478	33287478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	61	662	0	ENST00000374542.5:c.1619C>T	p.Pro540Leu	p.P540L	ENST00000374542	NM_001141970.1	540	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	139	535	3	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	139	535	3	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
PAK7	0	MSKCC	GRCh37	20	9546559	9546559	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs958970085		P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	217	518	0	ENST00000353224.5:c.1463G>A	p.Arg488Gln	p.R488Q	ENST00000353224	NM_177990.2	488	cGa/cAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69050701	69050701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	32	235	1	ENST00000288368.4:c.4036G>A	p.Glu1346Lys	p.E1346K	ENST00000288368	NM_024870.2	1346	Gaa/Aaa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625453	69625453	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147952743		P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	96	768	0	ENST00000334134.2:c.340G>A	p.Glu114Lys	p.E114K	ENST00000334134	NM_005247.2	114	Gag/Aag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533883	63533883	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780894296		P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	76	707	0	ENST00000307078.5:c.1271C>T	p.Ser424Phe	p.S424F	ENST00000307078	NM_004655.3	424	tCc/tTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866080	37866080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	103	778	1	ENST00000269571.5:c.589C>T	p.Pro197Ser	p.P197S	ENST00000269571		197	Ccg/Tcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	139	535	3	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696411	47696411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs968974699		P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	71	590	0	ENST00000347630.2:c.412C>T	p.Arg138Cys	p.R138C	ENST00000347630	NM_001007230.1	138	Cgt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435082	18435082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	16	292	0	ENST00000266497.5:c.67G>A	p.Glu23Lys	p.E23K	ENST00000266497		23	Gaa/Aaa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375078	31375078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	400	847	0	ENST00000328111.2:c.475C>T	p.Pro159Ser	p.P159S	ENST00000328111	NM_006892.3	159	Ccg/Tcg																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797707	45797707	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147718169		P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	196	858	0	ENST00000372115.3:c.943G>A	p.Val315Met	p.V315M	ENST00000372115	NM_001048171.1	315	Gtg/Atg																																																																														
TET1	80312	MSKCC	GRCh37	10	70405061	70405061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	37	496	0	ENST00000373644.4:c.2575C>T	p.Pro859Ser	p.P859S	ENST00000373644	NM_030625.2	859	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445757	49445757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1411	174	1321	0	ENST00000301067.7:c.1709C>T	p.Ser570Phe	p.S570F	ENST00000301067	NM_003482.3	570	tCt/tTt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640649	3640650	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	219	1006	2	ENST00000294008.3:c.2989_2990delinsTT	p.Pro997Leu	p.P997L	ENST00000294008	NM_032444.2	997	CCg/TTg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117550	4117550	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs121434497		P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	69	477	0	ENST00000262948.5:c.170T>G	p.Phe57Cys	p.F57C	ENST00000262948	NM_030662.3	57	tTt/tGt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609807	117609807	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1451070985		P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	42	565	2	ENST00000368508.3:c.6892G>A	p.Glu2298Lys	p.E2298K	ENST00000368508	NM_002944.2	2298	Gaa/Aaa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946111	13946111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	33	453	0	ENST00000405192.2:c.985C>T	p.His329Tyr	p.H329Y	ENST00000405192	NM_001163147.1	329	Cat/Tat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5064882	5064882	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	47	168	0	ENST00000381652.3:c.1057-1G>A		p.X353_splice	ENST00000381652	NM_004972.3	353																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209723	98209723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	105	815	1	ENST00000331920.6:c.3815C>T	p.Pro1272Leu	p.P1272L	ENST00000331920	NM_000264.3	1272	cCc/cTc																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915979	127915979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	105	404	0	ENST00000373547.4:c.502C>G	p.Pro168Ala	p.P168A	ENST00000373547	NM_002721.4	168	Cct/Gct																																																																														
ATRX	546	MSKCC	GRCh37	X	76849209	76849209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	48	361	0	ENST00000373344.5:c.6067C>T	p.Leu2023Phe	p.L2023F	ENST00000373344	NM_000489.3	2023	Ctc/Ttc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	70	455	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	61	360	0				ENST00000310581	NM_198253.2																																																																																
CIC	23152	MSKCC	GRCh37	19	42796242	42796242	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	74	804	1	ENST00000575354.2:c.2891T>A	p.Ile964Asn	p.I964N	ENST00000575354	NM_015125.3	964	aTc/aAc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177657	56177657	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	61	461	2	ENST00000399503.3:c.2630T>A	p.Leu877Ter	p.L877*	ENST00000399503	NM_005921.1	877	tTg/tAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	96	447	1	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
SDHB	6390	MSKCC	GRCh37	1	17380492	17380492	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199848267		P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	230	907	0	ENST00000375499.3:c.23C>T	p.Ser8Phe	p.S8F	ENST00000375499	NM_003000.2	8	tCc/tTc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332196	70332196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759674654		P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	69	372	0	ENST00000373644.4:c.101C>T	p.Ala34Val	p.A34V	ENST00000373644	NM_030625.2	34	gCc/gTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129670	11129670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	387	779	0	ENST00000344626.4:c.2476G>C	p.Ala826Pro	p.A826P	ENST00000344626	NM_003072.3	826	Gcc/Ccc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363643	40363643	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	97	384	0	ENST00000397332.2:c.587-1G>C		p.X196_splice	ENST00000397332	NM_001033082.2	196																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633671	69633671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	16	30	0	ENST00000334134.2:c.31C>A	p.Leu11Met	p.L11M	ENST00000334134	NM_005247.2	11	Ctg/Atg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56477657	56477657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	166	645	1	ENST00000267101.3:c.205G>A	p.Gly69Arg	p.G69R	ENST00000267101	NM_001982.3	69	Gga/Aga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432090	121432090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	177	873	1	ENST00000257555.6:c.837C>A	p.His279Gln	p.H279Q	ENST00000257555		279	caC/caA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829543	72829543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	342	628	0	ENST00000268489.5:c.7038C>G	p.His2346Gln	p.H2346Q	ENST00000268489	NM_006885.3	2346	caC/caG																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872751	136872751	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	94	474	0	ENST00000241393.3:c.747C>G	p.Phe249Leu	p.F249L	ENST00000241393	NM_003467.2	249	ttC/ttG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419918	41419918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	259	618	0	ENST00000373198.4:c.403G>T	p.Val135Leu	p.V135L	ENST00000373198	NM_133170.3	135	Gtg/Ttg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259476	89259476	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	363	499	0	ENST00000336596.2:c.620A>C	p.Lys207Thr	p.K207T	ENST00000336596	NM_005233.5	207	aAg/aCg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400286	139400286	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	398	877	0	ENST00000277541.6:c.4062C>G	p.Ser1354Arg	p.S1354R	ENST00000277541	NM_017617.3	1354	agC/agG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0044496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	110	442	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	84	366	1	ENST00000342988.3:c.1611C>A	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578209	7578209	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	132	758	0	ENST00000269305.4:c.640C>G	p.His214Asp	p.H214D	ENST00000269305	NM_001126112.2	214	Cat/Gat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0044648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	74	556	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
NF1	4763	MSKCC	GRCh37	17	29559852	29559852	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	132	294	0	ENST00000358273.4:c.3449C>G	p.Ser1150Ter	p.S1150*	ENST00000358273	NM_001042492.2	1150	tCa/tGa																																																																														
KDR	3791	MSKCC	GRCh37	4	55955063	55955063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	74	472	0	ENST00000263923.4:c.3482G>A	p.Gly1161Glu	p.G1161E	ENST00000263923	NM_002253.2	1161	gGa/gAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459498	50459498	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777862077		P-0044657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	43	267	1	ENST00000331340.3:c.787G>A	p.Val263Met	p.V263M	ENST00000331340	NM_006060.4	263	Gtg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132610	11132610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	372	817	0	ENST00000344626.4:c.2826G>T	p.Trp942Cys	p.W942C	ENST00000344626	NM_003072.3	942	tgG/tgT																																																																														
SOS1	6654	MSKCC	GRCh37	2	39278395	39278395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	46	492	0	ENST00000402219.2:c.754A>G	p.Ile252Val	p.I252V	ENST00000402219	NM_005633.3	252	Ata/Gta																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873193	136873193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	67	332	2	ENST00000241393.3:c.305G>C	p.Trp102Ser	p.W102S	ENST00000241393	NM_003467.2	102	tGg/tCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	73	708	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	464	669	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs28934873		P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	18	849	0	ENST00000269305.4:c.398T>C	p.Met133Thr	p.M133T	ENST00000269305	NM_001126112.2	133	aTg/aCg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023157	31023157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	100	595	0	ENST00000375687.4:c.2642G>A	p.Arg881Lys	p.R881K	ENST00000375687	NM_015338.5	881	aGa/aAa																																																																														
RB1	5925	MSKCC	GRCh37	13	48955544	48955544	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	13	353	0	ENST00000267163.4:c.1660G>T	p.Glu554Ter	p.E554*	ENST00000267163	NM_000321.2	554	Gaa/Taa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959378	26959378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	69	342	0	ENST00000381527.3:c.545C>T	p.Ser182Leu	p.S182L	ENST00000381527	NM_001260.1	182	tCa/tTa																																																																														
MET	4233	MSKCC	GRCh37	7	116380140	116380140	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	90	559	0	ENST00000397752.3:c.1527+2T>A		p.X509_splice	ENST00000397752	NM_000245.2	509																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411303	63411303	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	158	811	1	ENST00000330258.3:c.1864G>T	p.Glu622Ter	p.E622*	ENST00000330258	NM_152424.3	622	Gag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70349271	70349271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	167	726	0	ENST00000374080.3:c.3683T>A	p.Phe1228Tyr	p.F1228Y	ENST00000374080		1228	tTt/tAt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11316133	11316133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	194	527	0	ENST00000361445.4:c.621G>C	p.Glu207Asp	p.E207D	ENST00000361445	NM_004958.3	207	gaG/gaC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084134	47084134	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	217	449	0	ENST00000409792.3:c.7155del	p.Lys2385AsnfsTer26	p.K2385Nfs*26	ENST00000409792	NM_014159.6	2385	aaA/aa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440360	52440360	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	170	511	0	ENST00000460680.1:c.692T>G	p.Met231Arg	p.M231R	ENST00000460680	NM_004656.3	231	aTg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0044704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	455	688	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426803	121426803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	193	526	0	ENST00000257555.6:c.494G>C	p.Trp165Ser	p.W165S	ENST00000257555		165	tGg/tCg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753072	42753072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111793182		P-0044704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	156	703	0	ENST00000222329.4:c.1192G>A	p.Gly398Ser	p.G398S	ENST00000222329	NM_006494.2	398	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938812	178938812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	76	159	0	ENST00000263967.3:c.2054G>C	p.Gly685Ala	p.G685A	ENST00000263967	NM_006218.2	685	gGc/gCc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609714	117609714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	117	353	1	ENST00000368508.3:c.6985C>T	p.Pro2329Ser	p.P2329S	ENST00000368508	NM_002944.2	2329	Cct/Tct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0044757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	218	755	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243673	41243673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	70	643	0	ENST00000357654.3:c.3875C>T	p.Ser1292Phe	p.S1292F	ENST00000357654	NM_007294.3	1292	tCt/tTt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95583985	95583985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	98	367	0	ENST00000343455.3:c.1483G>C	p.Glu495Gln	p.E495Q	ENST00000343455	NM_177438.2	495	Gaa/Caa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467808	50467808	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	172	643	0	ENST00000331340.3:c.1043del	p.Tyr348SerfsTer67	p.Y348Sfs*67	ENST00000331340	NM_006060.4	348	tAc/tc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098815	178098815	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	210	491	0	ENST00000397062.3:c.230A>G	p.Asp77Gly	p.D77G	ENST00000397062	NM_006164.4	77	gAt/gGt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021824	71021824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	21	156	0	ENST00000318789.4:c.1534G>A	p.Ala512Thr	p.A512T	ENST00000318789	NM_032682.5	512	Gca/Aca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117630071	117630071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	20	267	1	ENST00000368508.3:c.6455G>T	p.Trp2152Leu	p.W2152L	ENST00000368508	NM_002944.2	2152	tGg/tTg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77066712	77066712	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1482673833		P-0044771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	12	216	1	ENST00000356341.3:c.772+1G>A		p.X258_splice	ENST00000356341	NM_002576.4	258																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425674	49425675	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0044771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	21	684	0	ENST00000301067.7:c.12813_12814del	p.Gly4272ProfsTer61	p.G4272Pfs*61	ENST00000301067	NM_003482.3	4271	acAGgc/acgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426485	49426486	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	69	826	0	ENST00000301067.7:c.12002dup	p.Met4001IlefsTer11	p.M4001Ifs*11	ENST00000301067	NM_003482.3	4001	atg/atTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431061	49431061	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	24	578	2	ENST00000301067.7:c.10078C>T	p.Gln3360Ter	p.Q3360*	ENST00000301067	NM_003482.3	3360	Cag/Tag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965621	93965621	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	23	341	0	ENST00000369303.4:c.2307T>A	p.Asn769Lys	p.N769K	ENST00000369303	NM_004440.3	769	aaT/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0044827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	199	486	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633625	69633625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782733556		P-0044827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	54	59	0	ENST00000334134.2:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000334134	NM_005247.2	26	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175707	112175707	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	96	284	0	ENST00000257430.4:c.4418del	p.Asn1473MetfsTer34	p.N1473Mfs*34	ENST00000257430	NM_000038.5	1472	gtA/gt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729447	41729447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	224	576	0	ENST00000242208.4:c.1082C>T	p.Thr361Met	p.T361M	ENST00000242208	NM_002192.2	361	aCg/aTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749198	43749198	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	181	555	0	ENST00000382044.4:c.1608G>C	p.Leu536Phe	p.L536F	ENST00000382044	NM_001141980.1	536	ttG/ttC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0044908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	254	458	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0044908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	243	553	0	ENST00000307102.5:c.303_308del	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862896	9862896	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1198247451		P-0044908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	323	579	0	ENST00000330684.3:c.2407G>A	p.Glu803Lys	p.E803K	ENST00000330684	NM_001134407.1	803	Gag/Aag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280068	66280068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	161	265	0	ENST00000273854.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000273854	NM_004439.5	541	Cga/Tga																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740098	162740098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781104392		P-0044908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	166	320	0	ENST00000367921.3:c.1300C>T	p.Arg434Trp	p.R434W	ENST00000367921	NM_006182.2	434	Cgg/Tgg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110245	3110245	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777099166		P-0044908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	425	887	1	ENST00000078429.4:c.235G>A	p.Val79Ile	p.V79I	ENST00000078429	NM_002067.2	79	Gtc/Atc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	601	452	0				ENST00000310581	NM_198253.2																																																																																
BRD4	23476	MSKCC	GRCh37	19	15355342	15355342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	257	475	0	ENST00000263377.2:c.2281C>G	p.Pro761Ala	p.P761A	ENST00000263377	NM_058243.2	761	Ccc/Gcc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31025104	31025104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	264	418	0	ENST00000375687.4:c.4589C>T	p.Pro1530Leu	p.P1530L	ENST00000375687	NM_015338.5	1530	cCc/cTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0044913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	130	549	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
NF1	4763	MSKCC	GRCh37	17	29652851	29652851	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	16	182	0	ENST00000358273.4:c.4849C>T	p.Gln1617Ter	p.Q1617*	ENST00000358273	NM_001042492.2	1617	Caa/Taa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298581	11298581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	47	567	0	ENST00000361445.4:c.1880C>T	p.Ser627Phe	p.S627F	ENST00000361445	NM_004958.3	627	tCc/tTc																																																																														
RARA	5914	MSKCC	GRCh37	17	38510626	38510626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	76	771	0	ENST00000254066.5:c.880C>G	p.Arg294Gly	p.R294G	ENST00000254066	NM_000964.3	294	Cgg/Ggg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891338	101891338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	36	404	0	ENST00000374994.4:c.299G>T	p.Cys100Phe	p.C100F	ENST00000374994	NM_004612.2	100	tGc/tTc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904986	101904986	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0044913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	19	223	0	ENST00000374994.4:c.973+1G>C		p.X325_splice	ENST00000374994	NM_004612.2	325																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0044929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	94	774	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	48939032	48939033	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	20	261	0	ENST00000267163.4:c.869dup	p.Asn290LysfsTer20	p.N290Kfs*20	ENST00000267163	NM_000321.2	288	-/A																																																																														
TET2	54790	MSKCC	GRCh37	4	106190872	106190872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	63	403	0	ENST00000380013.4:c.4150G>C	p.Asp1384His	p.D1384H	ENST00000380013	NM_001127208.2	1384	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579445	7579448	+	frameshift_variant	Frame_Shift_Del	DEL	GTAG	GTAG	-			P-0044929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	93	869	0	ENST00000269305.4:c.239_242del	p.Pro80HisfsTer42	p.P80Hfs*42	ENST00000269305	NM_001126112.2	80	cCTACa/ca																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098933	178098953	+	inframe_deletion	In_Frame_Del	DEL	CAAATACTTCTCGACTTACTC	CAAATACTTCTCGACTTACTC	-			P-0044929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	49	358	0	ENST00000397062.3:c.92_112del	p.Gly31_Phe37del	p.G31_F37del	ENST00000397062	NM_006164.4	31	gGAGTAAGTCGAGAAGTATTTGac/gac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	66	147	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMO	6608	MSKCC	GRCh37	7	128829039	128829040	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs570242755		P-0044954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	16	8	0	ENST00000249373.3:c.67_69dup	p.Leu23dup	p.L23dup	ENST00000249373	NM_005631.4	23	ggg/ggGCTg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988204	36988204	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	55	163	0	ENST00000354822.5:c.449del	p.Pro150ArgfsTer16	p.P150Rfs*16	ENST00000354822	NM_001079668.2	150	cCg/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	109	320	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519981		P-0044986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	104	482	0	ENST00000269305.4:c.712T>C	p.Cys238Arg	p.C238R	ENST00000269305	NM_001126112.2	238	Tgt/Cgt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99460087	99460087	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	20	314	0	ENST00000268035.6:c.2183A>G	p.Asn728Ser	p.N728S	ENST00000268035	NM_000875.3	728	aAc/aGc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412635	63412635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376626895		P-0044986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	80	269	0	ENST00000330258.3:c.532C>T	p.Arg178Cys	p.R178C	ENST00000330258	NM_152424.3	178	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445190	49445216	+	inframe_deletion	In_Frame_Del	DEL	GGCTCCTCAGGCCGGGGGGACAGGTGC	GGCTCCTCAGGCCGGGGGGACAGGTGC	-	rs587778449		P-0044986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	50	766	1	ENST00000301067.7:c.2250_2276del	p.Arg755_Pro763del	p.R755_P763del	ENST00000301067	NM_003482.3	750	ccGCACCTGTCCCCCCGGCCTGAGGAGCCa/cca																																																																														
RET	5979	MSKCC	GRCh37	10	43606766	43606766	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs539995816		P-0044986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	35	687	1	ENST00000355710.3:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000355710	NM_020975.4	459	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971162	+	inframe_deletion	In_Frame_Del	DEL	GAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTG	GAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTG	-			P-0044986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	32	508	0	ENST00000304494.5:c.196_234del	p.His66_Leu78del	p.H66_L78del	ENST00000304494	NM_000077.4	66	CACGGCGCGGAGCCCAACTGCGCCGACCCCGCCACTCTC/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971162	+	inframe_deletion	In_Frame_Del	DEL	GAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTG	GAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTG	-			P-0044986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	32	508	0	ENST00000304494.5:c.196_234del	p.His66_Leu78del	p.H66_L78del	ENST00000304494	NM_000077.4	66	CACGGCGCGGAGCCCAACTGCGCCGACCCCGCCACTCTC/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971162	+	inframe_deletion	In_Frame_Del	DEL	GAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTG	GAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTG	-			P-0044986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	32	508	0	ENST00000304494.5:c.196_234del	p.His66_Leu78del	p.H66_L78del	ENST00000304494	NM_000077.4	66	CACGGCGCGGAGCCCAACTGCGCCGACCCCGCCACTCTC/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	38	394	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	131	830	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																														
RFWD2	0	MSKCC	GRCh37	1	175956173	175956173	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	28	296	0	ENST00000367669.3:c.2039T>G	p.Phe680Cys	p.F680C	ENST00000367669	NM_022457.5	680	tTt/tGt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987053	36987054	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0045018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	121	591	0	ENST00000354822.5:c.635_636del	p.Gln212ProfsTer226	p.Q212Pfs*226	ENST00000354822	NM_001079668.2	212	cAA/c																																																																														
MET	4233	MSKCC	GRCh37	7	116340111	116340111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	22	244	0	ENST00000397752.3:c.973C>G	p.Pro325Ala	p.P325A	ENST00000397752	NM_000245.2	325	Cct/Gct																																																																														
JAK2	3717	MSKCC	GRCh37	9	5044411	5044411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	36	375	0	ENST00000381652.3:c.359T>A	p.Phe120Tyr	p.F120Y	ENST00000381652	NM_004972.3	120	tTt/tAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	181	376	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1806092	1806092	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913484		P-0045134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	277	870	0	ENST00000260795.2:c.1111A>T	p.Ser371Cys	p.S371C	ENST00000260795		371	Agt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0045134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	84	431	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057727	27057727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	279	680	1	ENST00000324856.7:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000324856	NM_006015.4	479	Cag/Tag																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793253	33793253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs137852728		P-0045134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	69	136	1	ENST00000498907.2:c.68del	p.Pro23ArgfsTer137	p.P23Rfs*137	ENST00000498907	NM_004364.3	23	cCg/cg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022454	12022454	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753079378		P-0045134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	323	838	0	ENST00000396373.4:c.560C>T	p.Thr187Met	p.T187M	ENST00000396373	NM_001987.4	187	aCg/aTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797314	135797314	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	126	237	0	ENST00000298552.3:c.555del	p.Tyr185Ter	p.Y185*	ENST00000298552	NM_001162426.1	185	taC/ta																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39311703	39311703	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	134	554	0	ENST00000373001.3:c.956A>T	p.Lys319Met	p.K319M	ENST00000373001	NM_022157.3	319	aAg/aTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828778	3828778	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	200	486	1	ENST00000262367.5:c.1864A>T	p.Lys622Ter	p.K622*	ENST00000262367	NM_004380.2	622	Aag/Tag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265456	198265456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	70	330	0	ENST00000335508.6:c.2701C>A	p.Gln901Lys	p.Q901K	ENST00000335508	NM_012433.2	901	Caa/Aaa																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519874		P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	272	326	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	355	427	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644490	18644490	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs181773550		P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	78	311	0	ENST00000266497.5:c.2668G>A	p.Asp890Asn	p.D890N	ENST00000266497		890	Gat/Aat																																																																														
POLE	5426	MSKCC	GRCh37	12	133219847	133219847	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060500822		P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	201	706	0	ENST00000320574.5:c.4514C>T	p.Pro1505Leu	p.P1505L	ENST00000320574	NM_006231.2	1505	cCc/cTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566827	212566827	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202247795		P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	82	227	0	ENST00000342788.4:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000342788	NM_005235.2	452	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	179	577	0	ENST00000304494.5:c.171_172delinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	179	577	0	ENST00000304494.5:c.171_172delinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005419	29005419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55687105		P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	83	288	0	ENST00000282397.4:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000282397	NM_002019.4	281	cGa/cAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	179	577	0	ENST00000304494.5:c.171_172delinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076945	41076945	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767453141		P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	152	462	0	ENST00000373198.4:c.1475C>T	p.Ser492Phe	p.S492F	ENST00000373198	NM_133170.3	492	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956771	68956771	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774302685		P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	227	667	1	ENST00000288368.4:c.889C>T	p.Arg297Cys	p.R297C	ENST00000288368	NM_024870.2	297	Cgt/Tgt																																																																														
PAK7	0	MSKCC	GRCh37	20	9546734	9546734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	82	340	0	ENST00000353224.5:c.1288G>A	p.Glu430Lys	p.E430K	ENST00000353224	NM_177990.2	430	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244139	46244139	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	133	361	1	ENST00000334344.6:c.2233C>T	p.Gln745Ter	p.Q745*	ENST00000334344	NM_152641.2	745	Cag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244595	41244595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	158	524	0	ENST00000357654.3:c.2953C>T	p.Pro985Ser	p.P985S	ENST00000357654	NM_007294.3	985	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445611	49445611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	425	993	0	ENST00000301067.7:c.1855C>T	p.Pro619Ser	p.P619S	ENST00000301067	NM_003482.3	619	Cca/Tca																																																																														
ATRX	546	MSKCC	GRCh37	X	76849194	76849194	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	114	285	0	ENST00000373344.5:c.6082C>T	p.Arg2028Ter	p.R2028*	ENST00000373344	NM_000489.3	2028	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76907819	76907819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	62	193	0	ENST00000373344.5:c.4342G>A	p.Glu1448Lys	p.E1448K	ENST00000373344	NM_000489.3	1448	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	300	389	1				ENST00000310581	NM_198253.2																																																																																
FLT4	2324	MSKCC	GRCh37	5	180057743	180057743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	219	799	0	ENST00000261937.6:c.212G>A	p.Gly71Glu	p.G71E	ENST00000261937	NM_182925.4	71	gGa/gAa																																																																														
MPL	4352	MSKCC	GRCh37	1	43805112	43805112	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	222	641	1	ENST00000372470.3:c.562A>C	p.Ile188Leu	p.I188L	ENST00000372470	NM_005373.2	188	Att/Ctt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125507394	125507394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771882988		P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	187	298	0	ENST00000428830.2:c.769C>T	p.Pro257Ser	p.P257S	ENST00000428830	NM_001114121.2	257	Cca/Tca																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869432	102869432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	147	391	0	ENST00000307046.8:c.209G>A	p.Gly70Asp	p.G70D	ENST00000307046	NM_001111285.1	70	gGc/gAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133254292	133254293	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	99	328	0	ENST00000320574.5:c.591_592delinsAA	p.Gly198Ser	p.G198S	ENST00000320574	NM_006231.2	197	agGGgc/agAAgc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611367	28611367	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	141	450	0	ENST00000241453.7:c.1264A>T	p.Asn422Tyr	p.N422Y	ENST00000241453	NM_004119.2	422	Aat/Tat																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068984	30068984	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	145	444	0	ENST00000331968.5:c.1945T>C	p.Phe649Leu	p.F649L	ENST00000331968	NM_002742.2	649	Ttt/Ctt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348679	89348679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	498	692	0	ENST00000301030.4:c.4271C>T	p.Ser1424Phe	p.S1424F	ENST00000301030	NM_001256183.1	1424	tCt/tTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602514	10602514	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	260	916	0	ENST00000171111.5:c.1064T>A	p.Leu355Ter	p.L355*	ENST00000171111	NM_203500.1	355	tTg/tAg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967060	25967060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763782415		P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	239	681	0	ENST00000435504.4:c.2146G>A	p.Gly716Ser	p.G716S	ENST00000435504		716	Ggc/Agc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158595031	158595031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	163	369	0	ENST00000263640.3:c.1316C>T	p.Pro439Leu	p.P439L	ENST00000263640	NM_001105.4	439	cCa/cTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248422	212248422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	110	273	0	ENST00000342788.4:c.3845C>T	p.Pro1282Leu	p.P1282L	ENST00000342788	NM_005235.2	1282	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295381	1295382	+	upstream_gene_variant	5'Flank	DNP	CC	CC	TT			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	92	316	0				ENST00000310581	NM_198253.2																																																																																
PREX2	80243	MSKCC	GRCh37	8	69129880	69129880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	118	345	0	ENST00000288368.4:c.4634C>T	p.Ala1545Val	p.A1545V	ENST00000288368	NM_024870.2	1545	gCc/gTc																																																																														
AR	367	MSKCC	GRCh37	X	66765029	66765029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	249	794	0	ENST00000374690.3:c.41C>T	p.Pro14Leu	p.P14L	ENST00000374690	NM_000044.3	14	cCg/cTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76938743	76938743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	125	546	1	ENST00000373344.5:c.2005G>A	p.Glu669Lys	p.E669K	ENST00000373344	NM_000489.3	669	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			105	46	67	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057520000		P-0046089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	173	321	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255461	16255461	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	74	195	0	ENST00000375759.3:c.2726A>G	p.Lys909Arg	p.K909R	ENST00000375759	NM_015001.2	909	aAa/aGa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418481	49418482	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			145	121	269	0	ENST00000301067.7:c.15931dup	p.Val5311GlyfsTer34	p.V5311Gfs*34	ENST00000301067	NM_003482.3	5311	gtg/gGtg																																																																														
RB1	5925	MSKCC	GRCh37	13	48954204	48954204	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			111	47	192	0	ENST00000267163.4:c.1405del	p.Ser469ProfsTer9	p.S469Pfs*9	ENST00000267163	NM_000321.2	469	Tcc/cc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039413	49039413	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	93	304	0	ENST00000267163.4:c.2399del	p.Pro800LeufsTer10	p.P800Lfs*10	ENST00000267163	NM_000321.2	800	Cct/ct																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504494	103504495	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	82	153	0	ENST00000355739.4:c.117dup	p.Lys40Ter	p.K40*	ENST00000355739	NM_000123.3	39	ctt/cTtt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060618	38060619	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	203	217	0	ENST00000250448.2:c.1370dup	p.Ala458GlyfsTer100	p.A458Gfs*100	ENST00000250448	NM_004496.3	457	ccg/ccCg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3842060	3842061	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0046089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			194	74	136	0	ENST00000262367.5:c.1251_1252del	p.His418LeufsTer8	p.H418Lfs*8	ENST00000262367	NM_004380.2	417	tcTCat/tcat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923390	9923390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	142	582	0	ENST00000330684.3:c.1897G>C	p.Val633Leu	p.V633L	ENST00000330684	NM_001134407.1	633	Gta/Cta																																																																														
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	325	684	1	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123836	46123837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	20	337	1	ENST00000334344.6:c.109dup	p.Ile37AsnfsTer29	p.I37Nfs*29	ENST00000334344	NM_152641.2	34	-/A																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023203	33023203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	88	409	0	ENST00000300177.4:c.312C>A	p.His104Gln	p.H104Q	ENST00000300177	NM_001191322.1	104	caC/caA																																																																														
YES1	7525	MSKCC	GRCh37	18	743261	743261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	119	529	0	ENST00000314574.4:c.879G>T	p.Met293Ile	p.M293I	ENST00000314574	NM_005433.3	293	atG/atT																																																																														
BARD1	580	MSKCC	GRCh37	2	215632297	215632297	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	45	530	0	ENST00000260947.4:c.1477C>T	p.Gln493Ter	p.Q493*	ENST00000260947	NM_000465.2	493	Caa/Taa																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114594	73114594	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	57	212	0	ENST00000356692.5:c.975A>T	p.Gln325His	p.Q325H	ENST00000356692		325	caA/caT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	79	354	0	ENST00000263967.3:c.3012G>C	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atC																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523157	176523157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	219	827	0	ENST00000292408.4:c.1921G>C	p.Asp641His	p.D641H	ENST00000292408	NM_213647.1	641	Gac/Cac																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146087	38146087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	220	768	0	ENST00000317025.8:c.3419C>A	p.Thr1140Lys	p.T1140K	ENST00000317025	NM_023034.1	1140	aCa/aAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971045	21971054	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCCGCGC	CCAGCCGCGC	-			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	274	700	0	ENST00000304494.5:c.304_313del	p.Ala102ThrfsTer41	p.A102Tfs*41	ENST00000304494	NM_000077.4	102	GCGCGGCTGGac/ac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971045	21971054	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCCGCGC	CCAGCCGCGC	-			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	274	700	0	ENST00000304494.5:c.304_313del	p.Ala102ThrfsTer41	p.A102Tfs*41	ENST00000304494	NM_000077.4	102	GCGCGGCTGGac/ac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971045	21971054	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCCGCGC	CCAGCCGCGC	-			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	274	700	0	ENST00000304494.5:c.304_313del	p.Ala102ThrfsTer41	p.A102Tfs*41	ENST00000304494	NM_000077.4	102	GCGCGGCTGGac/ac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041009	47041009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	160	929	1	ENST00000329236.7:c.1305G>T	p.Glu435Asp	p.E435D	ENST00000329236	NM_001204466.1	435	gaG/gaT																																																																														
FAM58A	0	MSKCC	GRCh37	X	152864490	152864490	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	13	42	0	ENST00000406277.2:c.38G>C	p.Arg13Pro	p.R13P	ENST00000406277	NM_152274.4	13	cGg/cCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	29	411	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416459	49416459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	881	522	0	ENST00000301067.7:c.16252G>C	p.Glu5418Gln	p.E5418Q	ENST00000301067	NM_003482.3	5418	Gaa/Caa																																																																														
RFWD2	0	MSKCC	GRCh37	1	176015365	176015370	+	inframe_deletion	In_Frame_Del	DEL	ACTGCA	ACTGCA	-			P-0048438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	23	215	0	ENST00000367669.3:c.1368_1373del	p.Asp456_Val458delinsGlu	p.D456_V458delinsE	ENST00000367669	NM_022457.5	456	gaTGCAGTg/gag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416616	49416616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	692	412	0	ENST00000301067.7:c.16095G>C	p.Gln5365His	p.Q5365H	ENST00000301067	NM_003482.3	5365	caG/caC																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198285	185198285	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1331568030		P-0000462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	62	289	0	ENST00000265026.3:c.2767G>A	p.Gly923Ser	p.G923S	ENST00000265026	NM_004721.4	923	Ggc/Agc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717630	89717630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	28	278	0	ENST00000371953.3:c.655C>T	p.Gln219Ter	p.Q219*	ENST00000371953	NM_000314.4	219	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692819	89692820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	18	145	0	ENST00000371953.3:c.306dup	p.Pro103ThrfsTer4	p.P103Tfs*4	ENST00000371953	NM_000314.4	101	-/A																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571839	64571840	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1077	68	751	0	ENST00000337652.1:c.1814dup	p.Ser606ValfsTer78	p.S606Vfs*78	ENST00000337652	NM_130803.2	605	ctg/ctTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76875887	76875887	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002817-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	358	489	0	ENST00000373344.5:c.5248C>G	p.Pro1750Ala	p.P1750A	ENST00000373344	NM_000489.3	1750	Cca/Gca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0005094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	125	466	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587781525		P-0005094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	125	564	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945413	17945413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1295	138	576	0	ENST00000458235.1:c.2317G>T	p.Val773Phe	p.V773F	ENST00000458235	NM_000215.3	773	Gtc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	47	433	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0006523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	50	553	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987163	36987163	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	18	304	0	ENST00000354822.5:c.526C>G	p.Leu176Val	p.L176V	ENST00000354822	NM_001079668.2	176	Ctg/Gtg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593583	55593595	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	AACCCATGTATGA	AACCCATGTATGA	T			P-0006712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	12	422	0	ENST00000288135.5:c.1649_1661delinsT	p.Lys550_Glu554delinsIle	p.K550_E554delinsI	ENST00000288135	NM_000222.2	550	aAACCCATGTATGAa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0006827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	108	518	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255496	16255496	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	54	376	0	ENST00000375759.3:c.2761C>T	p.Gln921Ter	p.Q921*	ENST00000375759	NM_015001.2	921	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255572	16255572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	70	473	1	ENST00000375759.3:c.2837C>T	p.Ser946Leu	p.S946L	ENST00000375759	NM_015001.2	946	tCa/tTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332864	70332864	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	99	490	0	ENST00000373644.4:c.769A>G	p.Thr257Ala	p.T257A	ENST00000373644	NM_030625.2	257	Acc/Gcc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188188	32188188	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370312303		P-0007066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	132	277	0	ENST00000375023.3:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000375023	NM_004557.3	385	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578503	7578507	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGG	CAGGG	-			P-0007066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	407	501	0	ENST00000269305.4:c.423_427del	p.Pro142AlafsTer5	p.P142Afs*5	ENST00000269305	NM_001126112.2	141	tgCCCTGtg/tgtg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356279	66356279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	124	391	0	ENST00000273854.3:c.1218G>C	p.Glu406Asp	p.E406D	ENST00000273854	NM_004439.5	406	gaG/gaC																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971262	13971262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	123	392	0	ENST00000405192.2:c.667C>T	p.Pro223Ser	p.P223S	ENST00000405192	NM_001163147.1	223	Cca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	45	416	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0007490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	150	321	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0007490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	94	265	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001104	150001104	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	153	421	0	ENST00000253339.5:c.2500A>G	p.Ile834Val	p.I834V	ENST00000253339		834	Att/Gtt																																																																														
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTA			P-0007490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	111	266	0	ENST00000257430.4:c.4463_4466dup	p.Leu1489PhefsTer26	p.L1489Ffs*26	ENST00000257430	NM_000038.5	1487	act/acTTTAt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592132	67592144	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAGCAGTAAAC	GAGAGCAGTAAAC	-			P-0007490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	139	299	0	ENST00000274335.5:c.1948_1960del	p.Glu650ArgfsTer8	p.E650Rfs*8	ENST00000274335		650	GAGAGCAGTAAACag/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0007687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			815	83	654	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	511	397	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0007736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			11	156	263	2				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0007736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			7	251	191	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0007736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			7	251	191	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
HGF	3082	MSKCC	GRCh37	7	81381466	81381466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	837	547	1	ENST00000222390.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000222390	NM_000601.4	199	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518354	8518354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	365	243	1	ENST00000356435.5:c.1037G>A	p.Gly346Glu	p.G346E	ENST00000356435		346	gGg/gAg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436117	110436117	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745752281		P-0007736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	366	411	0	ENST00000375856.3:c.2284C>T	p.Pro762Ser	p.P762S	ENST00000375856	NM_003749.2	762	Ccc/Tcc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973778	15973778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	375	400	1	ENST00000268712.3:c.4214C>T	p.Ser1405Phe	p.S1405F	ENST00000268712	NM_006311.3	1405	tCc/tTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10251817	10251817	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200950656		P-0007736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	368	522	0	ENST00000340748.4:c.3310C>T	p.Arg1104Cys	p.R1104C	ENST00000340748		1104	Cgt/Tgt																																																																														
ATRX	546	MSKCC	GRCh37	X	76907656	76907656	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	733	1049	0	ENST00000373344.5:c.4505A>G	p.Glu1502Gly	p.E1502G	ENST00000373344	NM_000489.3	1502	gAg/gGg																																																																														
ATRX	546	MSKCC	GRCh37	X	76938406	76938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	548	742	0	ENST00000373344.5:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000373344	NM_000489.3	781	cGa/cAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561450	9561451	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0007736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	259	368	1	ENST00000353224.5:c.331_332delinsAA	p.Gly111Lys	p.G111K	ENST00000353224	NM_177990.2	111	GGa/AAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443863	49443864	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0007736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	328	390	0	ENST00000301067.7:c.3507_3508delinsT	p.Glu1171AsnfsTer41	p.E1171Nfs*41	ENST00000301067	NM_003482.3	1169	taCCcc/taTcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0009029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	124	240	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0009029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	112	261	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371524413		P-0009029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	15	321	0	ENST00000269305.4:c.467G>A	p.Arg156His	p.R156H	ENST00000269305	NM_001126112.2	156	cGc/cAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806564	1806564	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1391325047		P-0009029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	178	330	0	ENST00000260795.2:c.1280C>G	p.Ser427Cys	p.S427C	ENST00000260795		427	tCc/tGc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245720	46245720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	51	347	0	ENST00000334344.6:c.3814C>T	p.Arg1272Ter	p.R1272*	ENST00000334344	NM_152641.2	1272	Cga/Tga																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651921	36651924	+	frameshift_variant	Frame_Shift_Del	DEL	AGCA	AGCA	-			P-0009029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	146	281	0	ENST00000244741.5:c.45_48del	p.Ser15ArgfsTer15	p.S15Rfs*15	ENST00000244741	NM_000389.4	15	AGCAag/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	603	465	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099982	157099987	+	inframe_deletion	In_Frame_Del	DEL	GGCGGC	GGCGGC	-	rs1466956162		P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	236	172	0	ENST00000346085.5:c.939_944del	p.Gly318_Gly319del	p.G318_G319del	ENST00000346085	NM_020732.3	307	GGCGGC/-																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678783	52678784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	382	538	0	ENST00000394830.3:c.835dup	p.Ile279AsnfsTer8	p.I279Nfs*8	ENST00000394830	NM_018313.4	279	ata/aAta																																																																														
BRCA1	672	MSKCC	GRCh37	17	41228517	41228517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	577	729	0	ENST00000357654.3:c.4472C>T	p.Pro1491Leu	p.P1491L	ENST00000357654	NM_007294.3	1491	cCa/cTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272105	15272105	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372833545		P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	281	136	0	ENST00000263388.2:c.6334G>A	p.Gly2112Ser	p.G2112S	ENST00000263388	NM_000435.2	2112	Ggt/Agt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659797	227659797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201158268		P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	602	530	0	ENST00000305123.5:c.3658C>T	p.Arg1220Cys	p.R1220C	ENST00000305123	NM_005544.2	1220	Cgc/Tgc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499326	89499326	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	493	535	0	ENST00000336596.2:c.2497-1G>C		p.X833_splice	ENST00000336596	NM_005233.5	833																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143130100	143130100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	412	578	3	ENST00000262992.4:c.916C>A	p.Gln306Lys	p.Q306K	ENST00000262992	NM_001101669.1	306	Caa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557214	187557214	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	71	566	0	ENST00000441802.2:c.4148A>C	p.Glu1383Ala	p.E1383A	ENST00000441802	NM_005245.3	1383	gAg/gCg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589232	67589232	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	93	566	0	ENST00000274335.5:c.1220A>G	p.His407Arg	p.H407R	ENST00000274335		407	cAc/cGc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931468	131931468	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369560280		P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	24	309	0	ENST00000265335.6:c.2173C>T	p.Arg725Trp	p.R725W	ENST00000265335		725	Cgg/Tgg																																																																														
MET	4233	MSKCC	GRCh37	7	116409844	116409844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	527	577	0	ENST00000397752.3:c.2729A>T	p.Glu910Val	p.E910V	ENST00000397752	NM_000245.2	910	gAg/gTg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859867	117859867	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	805	945	0	ENST00000297338.2:c.1768A>T	p.Arg590Ter	p.R590*	ENST00000297338	NM_006265.2	590	Aga/Tga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557423	21557423	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	273	688	0	ENST00000382592.4:c.2422A>G	p.Thr808Ala	p.T808A	ENST00000382592	NM_014572.2	808	Aca/Gca																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611339	28611339	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	376	683	0	ENST00000241453.7:c.1292T>A	p.Phe431Tyr	p.F431Y	ENST00000241453	NM_004119.2	431	tTc/tAc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11984755	11984755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	283	238	1	ENST00000353533.5:c.301G>T	p.Asp101Tyr	p.D101Y	ENST00000353533	NM_003010.3	101	Gac/Tac																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384610	31384610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	856	717	0	ENST00000328111.2:c.1312T>C	p.Cys438Arg	p.C438R	ENST00000328111	NM_006892.3	438	Tgt/Cgt																																																																														
RB1	5925	MSKCC	GRCh37	13	48878176	48878177	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	381	243	0	ENST00000267163.4:c.131_132del	p.Leu44ArgfsTer4	p.L44Rfs*4	ENST00000267163	NM_000321.2	43	cCT/c																																																																														
ALK	238	MSKCC	GRCh37	2	29416532	29416532	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	736	583	0	ENST00000389048.3:c.4421del	p.Gly1474AspfsTer3	p.G1474Dfs*3	ENST00000389048	NM_004304.4	1474	gGa/ga																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067432	37067433	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	544	465	0	ENST00000231790.2:c.1348dup	p.Asp450GlyfsTer29	p.D450Gfs*29	ENST00000231790	NM_000249.3	448	gag/gaGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426261	49426263	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	739	660	0	ENST00000301067.7:c.12225_12227del	p.Leu4077del	p.L4077del	ENST00000301067	NM_003482.3	4075	ctCCTg/ctg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88679156	88679156	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	114	146	0	ENST00000372037.3:c.1100del	p.Asn367ThrfsTer32	p.N367Tfs*32	ENST00000372037	NM_004329.2	366	Aaa/aa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23649272	23649273	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	429	418	0	ENST00000261584.4:c.109_110del	p.Arg37CysfsTer5	p.R37Cfs*5	ENST00000261584	NM_024675.3	37	CGt/t																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445149	49445149	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	367	282	0	ENST00000301067.7:c.2317del	p.Gln773SerfsTer157	p.Q773Sfs*157	ENST00000301067	NM_003482.3	773	Cag/ag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781792	3781793	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0009613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	641	507	0	ENST00000262367.5:c.4874_4875delinsAT	p.Met1625Asn	p.M1625N	ENST00000262367	NM_004380.2	1625	aTG/aAT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	5039	471	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RB1	5925	MSKCC	GRCh37	13	48954210	48954210	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1354030520		P-0009864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	80	446	0	ENST00000267163.4:c.1411C>T	p.Gln471Ter	p.Q471*	ENST00000267163	NM_000321.2	471	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-	rs587780067		P-0009864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	138	344	0	ENST00000269305.4:c.365_366del	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432811	432811	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	118	502	0	ENST00000399788.2:c.2105A>G	p.His702Arg	p.H702R	ENST00000399788	NM_001042603.1	702	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	136	304	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0010599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	423	398	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88649926	88649926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	110	293	0	ENST00000372037.3:c.175T>A	p.Leu59Ile	p.L59I	ENST00000372037	NM_004329.2	59	Tta/Ata																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436705	110436705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1726	108	513	0	ENST00000375856.3:c.1696G>T	p.Asp566Tyr	p.D566Y	ENST00000375856	NM_003749.2	566	Gac/Tac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061607	38061607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	32	146	0	ENST00000250448.2:c.382G>T	p.Gly128Cys	p.G128C	ENST00000250448	NM_004496.3	128	Ggc/Tgc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969920	81969920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1699	173	793	0	ENST00000359376.3:c.2989T>C	p.Tyr997His	p.Y997H	ENST00000359376	NM_002661.3	997	Tac/Cac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608322	28608322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	184	428	1	ENST00000241453.7:c.1734G>T	p.Met578Ile	p.M578I	ENST00000241453	NM_004119.2	578	atG/atT																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	86	277	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																														
REL	5966	MSKCC	GRCh37	2	61147574	61147574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1476158837		P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	82	88	1	ENST00000295025.8:c.979G>A	p.Asp327Asn	p.D327N	ENST00000295025	NM_002908.2	327	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525544	187525544	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	173	533	0	ENST00000441802.2:c.10535T>A	p.Leu3512Ter	p.L3512*	ENST00000441802	NM_005245.3	3512	tTa/tAa																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514219	69514219	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	211	556	1	ENST00000294312.3:c.462C>A	p.Tyr154Ter	p.Y154*	ENST00000294312	NM_005117.2	154	taC/taA																																																																														
POLE	5426	MSKCC	GRCh37	12	133252337	133252337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	333	503	0	ENST00000320574.5:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000320574	NM_006231.2	364	Ggg/Agg																																																																														
POLE	5426	MSKCC	GRCh37	12	133252685	133252685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	160	459	0	ENST00000320574.5:c.1015G>T	p.Asp339Tyr	p.D339Y	ENST00000320574	NM_006231.2	339	Gat/Tat																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895610	28895610	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	187	503	0	ENST00000282397.4:c.3164G>C	p.Arg1055Thr	p.R1055T	ENST00000282397	NM_002019.4	1055	aGa/aCa																																																																														
AXL	558	MSKCC	GRCh37	19	41754689	41754689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1196	234	594	1	ENST00000301178.4:c.1675G>T	p.Asp559Tyr	p.D559Y	ENST00000301178	NM_021913.4	559	Gac/Tac																																																																														
EP300	2033	MSKCC	GRCh37	22	41572440	41572440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	103	402	0	ENST00000263253.7:c.4969G>C	p.Glu1657Gln	p.E1657Q	ENST00000263253	NM_001429.3	1657	Gag/Cag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965670	93965670	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	749	785	0	ENST00000369303.4:c.2258del	p.Gly753AspfsTer31	p.G753Dfs*31	ENST00000369303	NM_004440.3	753	gGa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578212	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0010688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	470	635	1	ENST00000269305.4:c.637_638delinsT	p.Arg213TyrfsTer34	p.R213Yfs*34	ENST00000269305	NM_001126112.2	213	CGa/Ta																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523009	25523009	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs772542252		P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	392	585	1	ENST00000264709.3:c.176C>T	p.Pro59Leu	p.P59L	ENST00000264709	NM_175629.2	59	cCg/cTg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131354	202131354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	127	311	0	ENST00000358485.4:c.322C>T	p.Gln108Ter	p.Q108*	ENST00000358485	NM_001080125.1	108	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	148	354	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541607	187541607	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	223	297	0	ENST00000441802.2:c.6133G>T	p.Glu2045Ter	p.E2045*	ENST00000441802	NM_005245.3	2045	Gag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710590	117710590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	300	332	1	ENST00000368508.3:c.1682C>A	p.Pro561Gln	p.P561Q	ENST00000368508	NM_002944.2	561	cCg/cAg																																																																														
RET	5979	MSKCC	GRCh37	10	43601928	43601928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	414	470	0	ENST00000355710.3:c.972G>T	p.Trp324Cys	p.W324C	ENST00000355710	NM_020975.4	324	tgG/tgT																																																																														
FLT1	2321	MSKCC	GRCh37	13	29002059	29002059	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	75	167	0	ENST00000282397.4:c.1107-1G>T		p.X369_splice	ENST00000282397	NM_002019.4	369																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435750	110435750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	106	78	0	ENST00000375856.3:c.2651G>T	p.Arg884Leu	p.R884L	ENST00000375856	NM_003749.2	884	cGc/cTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900321	3900321	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750216784		P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	124	533	0	ENST00000262367.5:c.775G>A	p.Ala259Thr	p.A259T	ENST00000262367	NM_004380.2	259	Gca/Aca																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223154	5223154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	283	477	0	ENST00000357368.4:c.2649C>A	p.Phe883Leu	p.F883L	ENST00000357368	NM_002850.3	883	ttC/ttA																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600378	10600378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	374	598	0	ENST00000171111.5:c.1477G>C	p.Glu493Gln	p.E493Q	ENST00000171111	NM_203500.1	493	Gag/Cag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	349	494	0	ENST00000171111.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000171111	NM_203500.1	470	Cgt/Tgt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602381	10602381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	338	560	1	ENST00000171111.5:c.1197G>A	p.Met399Ile	p.M399I	ENST00000171111	NM_203500.1	399	atG/atA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928896	44928914	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCAGCATCTCCAGGCAG	TCCCAGCATCTCCAGGCAG	-			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	188	290	0	ENST00000377967.4:c.1996_2014del	p.Ser666LeufsTer19	p.S666Lfs*19	ENST00000377967	NM_021140.2	666	TCCCAGCATCTCCAGGCAGct/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577522	7577522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	255	436	0	ENST00000269305.4:c.759del	p.Ile254SerfsTer91	p.I254Sfs*91	ENST00000269305	NM_001126112.2	253	acC/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577593	7577593	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	219	327	0	ENST00000269305.4:c.688del	p.Thr230ProfsTer17	p.T230Pfs*17	ENST00000269305	NM_001126112.2	230	Acc/cc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620470	52620470	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	30	654	0	ENST00000394830.3:c.3283C>T	p.Arg1095Ter	p.R1095*	ENST00000394830	NM_018313.4	1095	Cga/Tga																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0014618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	10	365	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																														
VHL	7428	MSKCC	GRCh37	3	10183762	10183764	+	missense_variant	Missense_Mutation	ONP	CAA	CAA	TAT			P-0014618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	157	1005	0	ENST00000256474.2:c.231_233delinsTAT	p.Asn78Ile	p.N78I	ENST00000256474	NM_000551.3	77	tgCAAt/tgTATt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	113	456	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0016649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	189	459	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0016649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	230	467	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs587780070		P-0016649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	22	486	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433557	49433564	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGGGTA	CCTGGGTA	-			P-0016649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	454	1001	0	ENST00000301067.7:c.7989_7996del	p.Thr2664ProfsTer7	p.T2664Pfs*7	ENST00000301067	NM_003482.3	2663	ggTACCCAGGac/ggac																																																																														
EP300	2033	MSKCC	GRCh37	22	41545797	41545798	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0016649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	459	681	0	ENST00000263253.7:c.2415_2416del	p.Pro806TyrfsTer31	p.P806Yfs*31	ENST00000263253	NM_001429.3	804	aaCTct/aact																																																																														
KDR	3791	MSKCC	GRCh37	4	55984840	55984840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	348	535	0	ENST00000263923.4:c.289G>A	p.Asp97Asn	p.D97N	ENST00000263923	NM_002253.2	97	Gac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44879948	44879949	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	406	528	0	ENST00000377967.4:c.539dup	p.Asn180LysfsTer5	p.N180Kfs*5	ENST00000377967	NM_021140.2	179	-/A																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200023	123200023	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0016649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	183	218	0	ENST00000218089.9:c.2097-2A>G		p.X699_splice	ENST00000218089	NM_001042749.1	699																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0016917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	358	634	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0016917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	175	342	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158118	47158118	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	304	662	0	ENST00000409792.3:c.4581T>G	p.Ile1527Met	p.I1527M	ENST00000409792	NM_014159.6	1527	atT/atG																																																																														
ATM	472	MSKCC	GRCh37	11	108098570	108098570	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs774185390		P-0017794-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	295	391	0	ENST00000278616.4:c.140C>G	p.Ser47Ter	p.S47*	ENST00000278616	NM_000051.3	47	tCa/tGa																																																																														
ATM	472	MSKCC	GRCh37	11	108098599	108098599	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017794-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	248	341	0	ENST00000278616.4:c.169T>G	p.Trp57Gly	p.W57G	ENST00000278616	NM_000051.3	57	Tgg/Ggg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425590	49425590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017794-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			888	119	863	0	ENST00000301067.7:c.12898C>A	p.Pro4300Thr	p.P4300T	ENST00000301067	NM_003482.3	4300	Cca/Aca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCG			P-0017794-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			361	305	714	0	ENST00000269571.5:c.2324_2325insGTACGTGATGGC	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCG																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518278	187518278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017794-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	90	280	1	ENST00000441802.2:c.12416G>T	p.Gly4139Val	p.G4139V	ENST00000441802	NM_005245.3	4139	gGg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112103087	112103087	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0017794-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	122	306	0	ENST00000257430.4:c.422+1del		p.R141fs	ENST00000257430	NM_000038.5	141	aGg/ag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227986	55227986	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769434273		P-0017794-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			879	92	524	1	ENST00000275493.2:c.1453G>A	p.Gly485Ser	p.G485S	ENST00000275493	NM_005228.3	485	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0020698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	205	1103	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131895017	131895017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	35	572	0	ENST00000265335.6:c.171C>G	p.Phe57Leu	p.F57L	ENST00000265335		57	ttC/ttG																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056167	26056167	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs375244851		P-0020698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	67	755	0	ENST00000343677.2:c.490G>T	p.Ala164Ser	p.A164S	ENST00000343677	NM_005319.3	164	Gcc/Tcc																																																																														
SYK	6850	MSKCC	GRCh37	9	93606353	93606353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	53	979	0	ENST00000375746.1:c.173G>A	p.Gly58Glu	p.G58E	ENST00000375746	NM_001174167.1	58	gGg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	37	880	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0021151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	39	915	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243736325	243736325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	34	707	0	ENST00000263826.5:c.722G>A	p.Arg241Gln	p.R241Q	ENST00000263826	NM_005465.4	241	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0021691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	46	853	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	60	893	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EP300	2033	MSKCC	GRCh37	22	41569723	41569723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs952188763		P-0021691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	48	591	0	ENST00000263253.7:c.4714G>A	p.Gly1572Arg	p.G1572R	ENST00000263253	NM_001429.3	1572	Ggg/Agg																																																																														
NUF2	83540	MSKCC	GRCh37	1	163317703	163317703	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	58	465	0	ENST00000271452.3:c.1099A>C	p.Lys367Gln	p.K367Q	ENST00000271452	NM_145697.2	367	Aag/Cag																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370246	40370246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	345	1094	2	ENST00000293328.3:c.1092G>A	p.Met364Ile	p.M364I	ENST00000293328	NM_012448.3	364	atG/atA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944562	40944562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868189942		P-0022312-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	83	335	1	ENST00000373198.4:c.1940C>T	p.Ser647Leu	p.S647L	ENST00000373198	NM_133170.3	647	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097712	27097713	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0022312-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	90	455	0	ENST00000324856.7:c.3302_3303del	p.Tyr1101CysfsTer3	p.Y1101Cfs*3	ENST00000324856	NM_006015.4	1101	TAt/t																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111476	8111508	+	frameshift_variant	Frame_Shift_Del	DEL	AGACCACCACAACCACACTCTGGAGGAGGAATG	AGACCACCACAACCACACTCTGGAGGAGGAATG	TGGCATT			P-0022312-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	58	396	2	ENST00000346208.3:c.962_994delinsTGGCATT	p.Gln321LeufsTer22	p.Q321Lfs*22	ENST00000346208		321	cAGACCACCACAACCACACTCTGGAGGAGGAATGcc/cTGGCATTcc																																																																														
CCND1	595	MSKCC	GRCh37	11	69465961	69465961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022312-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1351	89	348	0	ENST00000227507.2:c.799G>A	p.Asp267Asn	p.D267N	ENST00000227507	NM_053056.2	267	Gac/Aac																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557528	21557528	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775075244		P-0022312-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	79	370	1	ENST00000382592.4:c.2317G>A	p.Ala773Thr	p.A773T	ENST00000382592	NM_014572.2	773	Gca/Aca																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688747	47688747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022312-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	63	292	0	ENST00000347630.2:c.553C>T	p.Arg185Trp	p.R185W	ENST00000347630	NM_001007230.1	185	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	74	798	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	21	593	1	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs786202082		P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	106	1035	0	ENST00000269305.4:c.827C>G	p.Ala276Gly	p.A276G	ENST00000269305	NM_001126112.2	276	gCc/gGc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325763	30325763	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777479817		P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	25	624	2	ENST00000322652.5:c.1961G>A	p.Arg654Gln	p.R654Q	ENST00000322652	NM_015355.2	654	cGa/cAa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896606	78896606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	81	900	0	ENST00000306801.3:c.2603G>T	p.Gly868Val	p.G868V	ENST00000306801	NM_020761.2	868	gGc/gTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180685	32180685	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	51	1065	0	ENST00000375023.3:c.2442del	p.Cys815ValfsTer30	p.C815Vfs*30	ENST00000375023	NM_004557.3	814	ccC/cc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504354	8504354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	62	969	0	ENST00000356435.5:c.1729C>A	p.Pro577Thr	p.P577T	ENST00000356435		577	Cca/Aca																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575149	64575149	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	300	585	0	ENST00000337652.1:c.673del	p.Trp225GlyfsTer4	p.W225Gfs*4	ENST00000337652	NM_130803.2	225	Tgg/gg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589637	67589637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	43	408	0	ENST00000274335.5:c.1400A>G	p.Tyr467Cys	p.Y467C	ENST00000274335		467	tAt/tGt																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271461	26271461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	31	653	0	ENST00000305910.3:c.152A>G	p.Glu51Gly	p.E51G	ENST00000305910	NM_003534.2	51	gAg/gGg																																																																														
ATRX	546	MSKCC	GRCh37	X	76940022	76940022	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	169	344	0	ENST00000373344.5:c.726del	p.Lys242AsnfsTer15	p.K242Nfs*15	ENST00000373344	NM_000489.3	242	aaA/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0023970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	23	960	1	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937852	36937871	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCAGCTCCAGGCTGGGGC	TCTCAGCTCCAGGCTGGGGC	-			P-0023970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	51	1082	0	ENST00000361632.4:c.965_984del	p.Ser322AsnfsTer84	p.S322Nfs*84	ENST00000361632		322	aGCCCCAGCCTGGAGCTGAGA/a																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	30	238	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs760043106		P-0025675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	148	535	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																														
SDHD	6392	MSKCC	GRCh37	11	111959656	111959656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	28	239	0	ENST00000375549.3:c.235C>G	p.Leu79Val	p.L79V	ENST00000375549	NM_003002.3	79	Ctg/Gtg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930298	39930298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	108	586	0	ENST00000378444.4:c.3166G>A	p.Gly1056Arg	p.G1056R	ENST00000378444	NM_001123385.1	1056	Gga/Aga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	178	241	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441989	52441990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	142	250	0	ENST00000460680.1:c.359dup	p.Ser123GlnfsTer3	p.S123Qfs*3	ENST00000460680	NM_004656.3	120	aag/aaAg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123199741	123199741	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	97	197	1	ENST00000218089.9:c.2041G>T	p.Glu681Ter	p.E681*	ENST00000218089	NM_001042749.1	681	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	106	490	1				ENST00000310581	NM_198253.2																																																																																
TBX3	6926	MSKCC	GRCh37	12	115112460	115112460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	163	601	0	ENST00000257566.3:c.1280G>C	p.Arg427Pro	p.R427P	ENST00000257566	NM_016569.3	427	cGg/cCg																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675070	40675070	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs747846923		P-0026518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	150	692	0	ENST00000249776.8:c.34G>C	p.Val12Leu	p.V12L	ENST00000249776	NM_033286.3	12	Gtt/Ctt																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907628	111907628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	54	298	0	ENST00000393256.3:c.402G>A	p.Met134Ile	p.M134I	ENST00000393256	NM_006538.4	134	atG/atA																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468240	50468240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	130	541	1	ENST00000331340.3:c.1475G>T	p.Cys492Phe	p.C492F	ENST00000331340	NM_006060.4	492	tGc/tTc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772823	135772823	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	112	596	0	ENST00000298552.3:c.2800A>T	p.Lys934Ter	p.K934*	ENST00000298552	NM_001162426.1	934	Aaa/Taa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95578563	95578563	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs886037684		P-0028064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	212	393	1	ENST00000343455.3:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000343455	NM_177438.2	688	Cga/Tga																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643579	38643579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	242	477	0	ENST00000299084.4:c.1049G>A	p.Gly350Glu	p.G350E	ENST00000299084	NM_152594.2	350	gGa/gAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55976821	55976821	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs368979581		P-0028064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	186	434	0	ENST00000263923.4:c.1091G>T	p.Trp364Leu	p.W364L	ENST00000263923	NM_002253.2	364	tGg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	356	426	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	172	590	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797429	45797429	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151316420		P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	80	726	1	ENST00000372115.3:c.1048C>T	p.Arg350Cys	p.R350C	ENST00000372115	NM_001048171.1	350	Cgc/Tgc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195614	102195614	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	60	405	0	ENST00000263464.3:c.374T>A	p.Leu125His	p.L125H	ENST00000263464	NM_001165.4	125	cTt/cAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373764	118373764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	51	358	0	ENST00000534358.1:c.7157C>T	p.Thr2386Ile	p.T2386I	ENST00000534358	NM_005933.3	2386	aCa/aTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230550	46230550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	134	310	0	ENST00000334344.6:c.799G>T	p.Glu267Ter	p.E267*	ENST00000334344	NM_152641.2	267	Gag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133233721	133233721	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	99	305	0	ENST00000320574.5:c.3582+1G>T		p.X1194_splice	ENST00000320574	NM_006231.2	1194																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313391	30313391	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1280438075		P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	170	606	0	ENST00000262643.3:c.991A>T	p.Met331Leu	p.M331L	ENST00000262643	NM_001238.2	331	Atg/Ttg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500473	149500473	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	199	521	0	ENST00000261799.4:c.2564C>A	p.Ser855Ter	p.S855*	ENST00000261799	NM_002609.3	855	tCg/tAg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87636204	87636204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	51	412	0	ENST00000277120.3:c.2369G>T	p.Arg790Leu	p.R790L	ENST00000277120		790	cGa/cTa																																																																														
RXRA	6256	MSKCC	GRCh37	9	137325976	137325976	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	158	688	0	ENST00000481739.1:c.1164G>T	p.Glu388Asp	p.E388D	ENST00000481739	NM_002957.4	388	gaG/gaT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040621	47040621	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	115	222	0	ENST00000329236.7:c.1023del	p.Gly342ValfsTer65	p.G342Vfs*65	ENST00000329236	NM_001204466.1	341	cAa/ca																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239728	53239728	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	145	296	0	ENST00000375401.3:c.1614del	p.Ser539HisfsTer10	p.S539Hfs*10	ENST00000375401	NM_004187.3	538	ccC/cc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453135	140453136	+	missense_variant	Missense_Mutation	DNP	CA	CA	TT	rs121913377		P-0029220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	61	529	2	ENST00000288602.6:c.1799_1800delinsAA	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTG/gAA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578197	7578197	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	879	791	0	ENST00000269305.4:c.652del	p.Val218CysfsTer29	p.V218Cfs*29	ENST00000269305	NM_001126112.2	218	Gtg/tg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261201	16261201	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	417	500	0	ENST00000375759.3:c.8466G>C	p.Gln2822His	p.Q2822H	ENST00000375759	NM_015001.2	2822	caG/caC																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218106	36218106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs773034213		P-0029548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	224	446	0	ENST00000222270.7:c.4053G>C	p.Glu1351Asp	p.E1351D	ENST00000222270	NM_014727.1	1351	gaG/gaC																																																																														
REL	5966	MSKCC	GRCh37	2	61144102	61144102	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	268	644	0	ENST00000295025.8:c.485A>G	p.Asn162Ser	p.N162S	ENST00000295025	NM_002908.2	162	aAt/aGt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458214	12458214	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	241	507	0	ENST00000287820.6:c.831C>G	p.Ile277Met	p.I277M	ENST00000287820	NM_015869.4	277	atC/atG																																																																														
ATR	545	MSKCC	GRCh37	3	142274966	142274967	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0029548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	188	399	0	ENST00000350721.4:c.2093_2094del	p.Asp698GlyfsTer3	p.D698Gfs*3	ENST00000350721	NM_001184.3	698	gAT/g																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751558	57751558	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	110	309	0	ENST00000274289.3:c.1433T>G	p.Val478Gly	p.V478G	ENST00000274289	NM_006622.3	478	gTt/gGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637393	176637419	+	inframe_deletion	In_Frame_Del	DEL	ATTCCAGATGCTTTCGATAGAACAGAG	ATTCCAGATGCTTTCGATAGAACAGAG	-			P-0029548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	244	532	0	ENST00000439151.2:c.1994_2020del	p.Ile665_Glu673del	p.I665_E673del	ENST00000439151	NM_022455.4	665	ATTCCAGATGCTTTCGATAGAACAGAG/-																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721214	176721214	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs539453877		P-0029548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	200	390	0	ENST00000439151.2:c.6845C>G	p.Pro2282Arg	p.P2282R	ENST00000439151	NM_022455.4	2282	cCt/cGt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148543672	148543672	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	189	381	0	ENST00000320356.2:c.136C>G	p.Arg46Gly	p.R46G	ENST00000320356	NM_004456.4	46	Cgt/Ggt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271229	38271240	+	frameshift_variant	Frame_Shift_Del	DEL	AGACGGAATCCT	AGACGGAATCCT	GC			P-0029548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1452	228	907	2	ENST00000425967.3:c.2468_2479delinsGC	p.Glu823GlyfsTer43	p.E823Gfs*43	ENST00000425967	NM_001174067.1	823	gAGGATTCCGTCTtc/gGCtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0031078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	85	365	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0031078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	96	162	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	71	354	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107090	27107091	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	79	330	0	ENST00000324856.7:c.6702dup	p.Ala2235CysfsTer43	p.A2235Cfs*43	ENST00000324856	NM_006015.4	2234	gct/gcTt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711289	114711289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	200	245	0	ENST00000543371.1:c.304G>T	p.Gly102Cys	p.G102C	ENST00000543371	NM_001198531.1	102	Ggc/Tgc																																																																														
SMO	6608	MSKCC	GRCh37	7	128849178	128849178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	59	411	1	ENST00000249373.3:c.1406G>A	p.Cys469Tyr	p.C469Y	ENST00000249373	NM_005631.4	469	tGc/tAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164722	47164741	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCTTCTTATACTCTTCTT	TGTCTTCTTATACTCTTCTT	-			P-0032952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	266	425	0	ENST00000409792.3:c.1385_1404del	p.Glu462ValfsTer22	p.E462Vfs*22	ENST00000409792	NM_014159.6	462	gAAGAAGAGTATAAGAAGACA/g																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287182	33287182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	429	578	0	ENST00000374542.5:c.1915del	p.Thr639GlnfsTer6	p.T639Qfs*6	ENST00000374542	NM_001141970.1	639	Aca/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	84	420	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121912666		P-0033017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	98	541	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593418	48593418	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	85	362	0	ENST00000342988.3:c.1170del	p.Glu390AspfsTer25	p.E390Dfs*25	ENST00000342988	NM_005359.5	390	gAa/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	122	504	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	118	365	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0033725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	101	386	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174106	112174106	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	106	376	0	ENST00000257430.4:c.2815A>T	p.Lys939Ter	p.K939*	ENST00000257430	NM_000038.5	939	Aag/Tag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004362	150004362	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	155	618	0	ENST00000253339.5:c.1863G>C	p.Lys621Asn	p.K621N	ENST00000253339		621	aaG/aaC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	1200	693	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0035498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	575	750	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532615	187532615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	79	449	0	ENST00000441802.2:c.9778G>A	p.Glu3260Lys	p.E3260K	ENST00000441802	NM_005245.3	3260	Gaa/Aaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561354	9561354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	462	602	0	ENST00000353224.5:c.428C>A	p.Thr143Asn	p.T143N	ENST00000353224	NM_177990.2	143	aCc/aAc																																																																														
NF2	4771	MSKCC	GRCh37	22	30051643	30051643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	157	411	0	ENST00000338641.4:c.577G>C	p.Ala193Pro	p.A193P	ENST00000338641	NM_000268.3	193	Gca/Cca																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468427	89468427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	157	302	0	ENST00000336596.2:c.1961C>A	p.Thr654Asn	p.T654N	ENST00000336596	NM_005233.5	654	aCc/aAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549857	187549857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	63	601	0	ENST00000441802.2:c.4384G>A	p.Glu1462Lys	p.E1462K	ENST00000441802	NM_005245.3	1462	Gaa/Aaa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	114	754	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	97	513	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	97	513	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs1057519877		P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	80	386	0	ENST00000558401.1:c.3G>A	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	97	513	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468393	89468393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	32	192	0	ENST00000336596.2:c.1927C>T	p.Pro643Ser	p.P643S	ENST00000336596	NM_005233.5	643	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	88	447	0				ENST00000310581	NM_198253.2																																																																																
PTEN	5728	MSKCC	GRCh37	10	89692941	89692941	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs753630034		P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	87	467	0	ENST00000371953.3:c.425G>C	p.Arg142Pro	p.R142P	ENST00000371953	NM_000314.4	142	cGg/cCg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231361	46231362	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	82	411	0	ENST00000334344.6:c.1206_1207del	p.Glu402AspfsTer9	p.E402Dfs*9	ENST00000334344	NM_152641.2	401	AGa/a																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619300	37619300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	76	417	0	ENST00000447079.4:c.976C>T	p.Pro326Ser	p.P326S	ENST00000447079	NM_015083.1	326	Ccc/Tcc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657544	37657544	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	95	503	0	ENST00000447079.4:c.2461A>C	p.Met821Leu	p.M821L	ENST00000447079	NM_015083.1	821	Atg/Ctg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131319	202131319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	69	430	0	ENST00000358485.4:c.287C>T	p.Pro96Leu	p.P96L	ENST00000358485	NM_001080125.1	96	cCc/cTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164850	47164850	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1184046423		P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	121	353	0	ENST00000409792.3:c.1276C>T	p.His426Tyr	p.H426Y	ENST00000409792	NM_014159.6	426	Cat/Tat																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750431	41750431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	83	419	0	ENST00000226382.2:c.197G>A	p.Ser66Asn	p.S66N	ENST00000226382	NM_003924.3	66	aGc/aAc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185242	123185245	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACAG	ACAG	-			P-0035523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	76	336	0	ENST00000218089.9:c.1194_1196+1del		p.X398_splice	ENST00000218089	NM_001042749.1	398																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	129	144	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395101	139395101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777423973		P-0036117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	71	375	1	ENST00000277541.6:c.5837G>A	p.Arg1946His	p.R1946H	ENST00000277541	NM_017617.3	1946	cGc/cAc																																																																														
WT1	7490	MSKCC	GRCh37	11	32456500	32456514	+	inframe_deletion	In_Frame_Del	DEL	GGTGGCGGCGGAGCC	GGTGGCGGCGGAGCC	-			P-0036117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	15	69	0	ENST00000332351.3:c.378_392del	p.Ala127_Pro131del	p.A127_P131del	ENST00000332351	NM_024426.4	126	ccGGCTCCGCCGCCACCc/ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579356	7579356	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	370	206	0	ENST00000269305.4:c.331del	p.Leu111TrpfsTer12	p.L111Wfs*12	ENST00000269305	NM_001126112.2	111	Ctg/tg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	237	576	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80343580	80343580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	47	350	4	ENST00000286548.4:c.739C>T	p.Arg247Ter	p.R247*	ENST00000286548	NM_002072.3	247	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693002	89693003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	110	600	0	ENST00000371953.3:c.491dup	p.Val166SerfsTer14	p.V166Sfs*14	ENST00000371953	NM_000314.4	162	-/A																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868438023		P-0038509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	238	1043	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0038509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	69	528	0				ENST00000310581	NM_198253.2																																																																																
FLT3	2322	MSKCC	GRCh37	13	28624256	28624256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	59	669	0	ENST00000241453.7:c.718G>A	p.Glu240Lys	p.E240K	ENST00000241453	NM_004119.2	240	Gaa/Aaa																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49280973	49280973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	99	613	0	ENST00000282018.3:c.20C>T	p.Ser7Phe	p.S7F	ENST00000282018	NM_020377.2	7	tCc/tTc																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5557656	5557656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	97	712	0	ENST00000397747.3:c.670C>T	p.His224Tyr	p.H224Y	ENST00000397747	NM_025239.3	224	Cac/Tac																																																																														
TEK	7010	MSKCC	GRCh37	9	27202932	27202932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	82	608	0	ENST00000380036.4:c.2024A>G	p.Lys675Arg	p.K675R	ENST00000380036	NM_000459.3	675	aAg/aGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0040003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	266	283	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0040003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	209	460	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	88	162	0	ENST00000257430.4:c.4634C>A	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tAa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31504699	31504699	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1032572786		P-0040003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	374	433	1	ENST00000344624.3:c.1631G>A	p.Arg544His	p.R544H	ENST00000344624		544	cGc/cAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	84	475	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713870	30713870	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1023568316		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	335	734	0	ENST00000359013.4:c.1270G>C	p.Gly424Arg	p.G424R	ENST00000359013	NM_001024847.2	424	Ggg/Cgg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	56	284	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	67	470	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967215	134967215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	104	648	2	ENST00000398015.3:c.2554G>T	p.Ala852Ser	p.A852S	ENST00000398015	NM_004441.4	852	Gct/Tct																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	71	445	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157822	106157822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	43	324	0	ENST00000380013.4:c.2723G>A	p.Gly908Asp	p.G908D	ENST00000380013	NM_001127208.2	908	gGt/gAt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59876485	59876485	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753214212		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	80	464	1	ENST00000259008.2:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000259008	NM_032043.2	439	cGa/cAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55991403	55991403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	153	807	1	ENST00000263923.4:c.58G>A	p.Ala20Thr	p.A20T	ENST00000263923	NM_002253.2	20	Gcc/Acc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389318	8389318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	80	674	0	ENST00000356435.5:c.4300G>A	p.Glu1434Lys	p.E1434K	ENST00000356435		1434	Gaa/Aaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844393	156844395	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs768558242		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	165	915	0	ENST00000524377.1:c.1231_1233del	p.Lys411del	p.K411del	ENST00000524377	NM_002529.3	409	gAGAag/gag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993366	72993366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140855443		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	171	829	2	ENST00000268489.5:c.679G>A	p.Val227Ile	p.V227I	ENST00000268489	NM_006885.3	227	Gtc/Atc																																																																														
POLE	5426	MSKCC	GRCh37	12	133218864	133218864	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1235110857		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	163	807	0	ENST00000320574.5:c.5072G>A	p.Arg1691His	p.R1691H	ENST00000320574	NM_006231.2	1691	cGc/cAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120611974	120611974	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	12	39	0	ENST00000256646.2:c.47G>A	p.Trp16Ter	p.W16*	ENST00000256646	NM_024408.3	16	tGg/tAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215552	5215552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114166264		P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	201	792	0	ENST00000357368.4:c.4151G>A	p.Arg1384Gln	p.R1384Q	ENST00000357368	NM_002850.3	1384	cGg/cAg																																																																														
CASP8	841	MSKCC	GRCh37	2	202123071	202123072	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	95	502	0	ENST00000358485.4:c.117_118delinsAA	p.Glu40Lys	p.E40K	ENST00000358485	NM_001080125.1	39	tcGGag/tcAAag																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374244	138374244	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	120	565	0	ENST00000289153.2:c.3200A>C	p.Asp1067Ala	p.D1067A	ENST00000289153	NM_006219.2	1067	gAc/gCc																																																																														
CASP8	841	MSKCC	GRCh37	2	202123072	202123072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	95	498	0	ENST00000358485.4:c.118G>A	p.Glu40Lys	p.E40K	ENST00000358485	NM_001080125.1	40	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	28	444	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	54	561	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	65	544	1				ENST00000310581	NM_198253.2																																																																																
CIC	23152	MSKCC	GRCh37	19	42791263	42791263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	97	978	0	ENST00000575354.2:c.323C>G	p.Pro108Arg	p.P108R	ENST00000575354	NM_015125.3	108	cCc/cGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0043514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	249	424	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98221945	98221945	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756465236		P-0043514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	162	599	0	ENST00000331920.6:c.2824C>T	p.Arg942Trp	p.R942W	ENST00000331920	NM_000264.3	942	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	167	398	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0044369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	243	691	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	89	486	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																														
APC	324	MSKCC	GRCh37	5	112177660	112177660	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	55	392	0	ENST00000257430.4:c.6369T>A	p.Cys2123Ter	p.C2123*	ENST00000257430	NM_000038.5	2123	tgT/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7576865	7576865	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	398	451	2	ENST00000269305.4:c.981T>A	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taT/taA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436076	49436076	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	139	489	0	ENST00000301067.7:c.5905C>G	p.Pro1969Ala	p.P1969A	ENST00000301067	NM_003482.3	1969	Ccc/Gcc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975433	26975433	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	147	209	0	ENST00000381527.3:c.1059C>A	p.Tyr353Ter	p.Y353*	ENST00000381527	NM_001260.1	353	taC/taA																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138095	64138095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	65	516	0	ENST00000334205.4:c.2018G>T	p.Trp673Leu	p.W673L	ENST00000334205	NM_003942.2	673	tGg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	125	603	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
RARA	5914	MSKCC	GRCh37	17	38512342	38512342	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	109	443	0	ENST00000254066.5:c.1253A>T	p.Glu418Val	p.E418V	ENST00000254066	NM_000964.3	418	gAg/gTg																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140172	50140172	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774218911		P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	48	464	0	ENST00000246792.3:c.253G>A	p.Ala85Thr	p.A85T	ENST00000246792	NM_006270.3	85	Gcg/Acg																																																																														
ALK	238	MSKCC	GRCh37	2	29416141	29416141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs753750497		P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	72	414	0	ENST00000389048.3:c.4812C>A	p.Tyr1604Ter	p.Y1604*	ENST00000389048	NM_004304.4	1604	taC/taA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156607	55156607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	84	467	0	ENST00000257290.5:c.3008G>T	p.Trp1003Leu	p.W1003L	ENST00000257290	NM_006206.4	1003	tGg/tTg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670657	86670657	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	33	224	0	ENST00000274376.6:c.1935T>G	p.Asp645Glu	p.D645E	ENST00000274376	NM_002890.2	645	gaT/gaG																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710766	117710766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	44	293	0	ENST00000368508.3:c.1506T>A	p.Phe502Leu	p.F502L	ENST00000368508	NM_002944.2	502	ttT/ttA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508470	106508470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1463222028		P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	24	238	0	ENST00000359195.3:c.464C>T	p.Thr155Met	p.T155M	ENST00000359195	NM_002649.2	155	aCg/aTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404598	8404598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	104	254	0	ENST00000356435.5:c.4149G>T	p.Lys1383Asn	p.K1383N	ENST00000356435		1383	aaG/aaT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504353	8504353	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	108	416	0	ENST00000356435.5:c.1730C>A	p.Pro577Gln	p.P577Q	ENST00000356435		577	cCa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	54	391	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	96	768	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50820842	50820842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	33	346	0	ENST00000398568.2:c.2017A>G	p.Thr673Ala	p.T673A	ENST00000398568	NM_001042412.1	673	Acc/Gcc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157488271	157488271	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1358728441		P-0046090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	37	480	0	ENST00000346085.5:c.2977C>T	p.Gln993Ter	p.Q993*	ENST00000346085	NM_020732.3	993	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971206	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CCTG			P-0046090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	51	464	0	ENST00000304494.5:c.151-3_151dup	p.Val51AlafsTer70	p.V51Afs*70	ENST00000304494	NM_000077.4	51	gtc/gCAGGtc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971206	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CCTG			P-0046090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	51	464	0	ENST00000304494.5:c.151-3_151dup	p.Val51AlafsTer70	p.V51Afs*70	ENST00000304494	NM_000077.4	51	gtc/gCAGGtc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971206	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CCTG			P-0046090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	51	464	0	ENST00000304494.5:c.151-3_151dup	p.Val51AlafsTer70	p.V51Afs*70	ENST00000304494	NM_000077.4	51	gtc/gCAGGtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0046275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	14	568	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130427	29130427	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587781269		P-0046275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	18	577	0	ENST00000328354.6:c.283C>T	p.Arg95Ter	p.R95*	ENST00000328354	NM_007194.3	95	Cga/Tga																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813324	102813324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377124814		P-0046275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	20	588	1	ENST00000307046.8:c.365G>A	p.Arg122His	p.R122H	ENST00000307046	NM_001111285.1	122	cGt/cAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492685	56492686	+	splice_donor_variant	Splice_Site	DNP	GC	GC	AA			P-0046275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	14	313	0	ENST00000407977.2:c.252+1_252+2delinsTT		p.X84_splice	ENST00000407977		84																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540425	187540426	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	13	352	0	ENST00000441802.2:c.7314dup	p.Val2439CysfsTer3	p.V2439Cfs*3	ENST00000441802	NM_005245.3	2438	-/T																																																																														
STAG2	10735	MSKCC	GRCh37	X	123227906	123227906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	14	282	0	ENST00000218089.9:c.3617C>T	p.Pro1206Leu	p.P1206L	ENST00000218089	NM_001042749.1	1206	cCa/cTa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141496	11141496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046877-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	75	621	0	ENST00000344626.4:c.3473C>T	p.Ala1158Val	p.A1158V	ENST00000344626	NM_003072.3	1158	gCt/gTt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204896	94204896	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185439615		P-0046877-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	34	259	0	ENST00000323929.3:c.689C>T	p.Pro230Leu	p.P230L	ENST00000323929	NM_005591.3	230	cCa/cTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0046877-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			136	84	379	0				ENST00000310581	NM_198253.2																																																																																
GATA1	2623	MSKCC	GRCh37	X	48652527	48652527	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	164	340	0	ENST00000376670.3:c.1203del	p.Thr402ProfsTer30	p.T402Pfs*30	ENST00000376670	NM_002049.3	400	Ccc/cc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598214	28598215	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0047237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	308	760	2	ENST00000253063.3:c.186_187delinsTT	p.Glu62_Gln63delinsAspTer	p.E62_Q63delinsD*	ENST00000253063	NM_031459.4	62	gaGCag/gaTTag																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115280694	115280694	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0047237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	65	297	0	ENST00000438362.2:c.338-1G>C		p.X113_splice	ENST00000438362	NM_001242891.1	113																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	75	355	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882025		P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	129	689	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022684	12022684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745867456		P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	148	632	0	ENST00000396373.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000396373	NM_001987.4	264	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290231	15290231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	79	1078	0	ENST00000263388.2:c.3404G>A	p.Gly1135Asp	p.G1135D	ENST00000263388	NM_000435.2	1135	gGt/gAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426402	49426402	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	97	1022	0	ENST00000301067.7:c.12086T>G	p.Val4029Gly	p.V4029G	ENST00000301067	NM_003482.3	4029	gTa/gGa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435912	56435912	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	59	704	0	ENST00000407977.2:c.1225C>T	p.Gln409Ter	p.Q409*	ENST00000407977		409	Cag/Tag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932792	49932792	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	94	829	0	ENST00000296474.3:c.3079G>C	p.Asp1027His	p.D1027H	ENST00000296474	NM_002447.2	1027	Gat/Cat																																																																														
MET	4233	MSKCC	GRCh37	7	116412045	116412046	+	splice_donor_variant,intron_variant	Splice_Site	DNP	TA	TA	GG			P-0048096-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			806	34	595	0	ENST00000397752.3:c.3028+2_3028+3delinsGG		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741678	17741678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	56	593	0	ENST00000250003.3:c.349C>A	p.Arg117Ser	p.R117S	ENST00000250003	NM_002478.4	117	Cgc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578464	7578465	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0048150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	128	871	0	ENST00000269305.4:c.465_466del	p.Val157ProfsTer23	p.V157Pfs*23	ENST00000269305	NM_001126112.2	155	acCCgc/acgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860839	151860839	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs182795390		P-0048150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	20	493	0	ENST00000262189.6:c.9823A>G	p.Met3275Val	p.M3275V	ENST00000262189	NM_170606.2	3275	Atg/Gtg																																																																														
RB1	5925	MSKCC	GRCh37	13	49030374	49030374	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	123	263	0	ENST00000267163.4:c.1850del	p.Gly617ValfsTer6	p.G617Vfs*6	ENST00000267163	NM_000321.2	617	Ggt/gt																																																																														
CDH1	999	MSKCC	GRCh37	16	68847221	68847221	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	149	367	0	ENST00000261769.5:c.1145del	p.Gly382ValfsTer11	p.G382Vfs*11	ENST00000261769	NM_004360.3	381	aaG/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421818	49421818	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	296	677	0	ENST00000301067.7:c.14489del	p.Pro4830GlnfsTer28	p.P4830Qfs*28	ENST00000301067	NM_003482.3	4830	cCa/ca																																																																														
ALK	238	MSKCC	GRCh37	2	29498295	29498295	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	217	405	0	ENST00000389048.3:c.1885T>C	p.Ser629Pro	p.S629P	ENST00000389048	NM_004304.4	629	Tcc/Ccc																																																																														
ATR	545	MSKCC	GRCh37	3	142281885	142281885	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	173	363	0	ENST00000350721.4:c.359A>C	p.His120Pro	p.H120P	ENST00000350721	NM_001184.3	120	cAc/cCc																																																																														
APC	324	MSKCC	GRCh37	5	112173310	112173310	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	97	180	0	ENST00000257430.4:c.2019T>G	p.Ser673Arg	p.S673R	ENST00000257430	NM_000038.5	673	agT/agG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0049116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	467	604	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518190	103518190	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs371246879		P-0049116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	155	276	1	ENST00000355739.4:c.2128G>C	p.Val710Leu	p.V710L	ENST00000355739	NM_000123.3	710	Gtg/Ctg																																																																														
ATRX	546	MSKCC	GRCh37	X	76890098	76890099	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAA			P-0049116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	177	368	0	ENST00000373344.5:c.4793_4795dup	p.Leu1598_Gly1599insVal	p.L1598_G1599insV	ENST00000373344	NM_000489.3	1599	ggt/gTTGgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	18	216	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0049440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	136	826	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
MSI2	124540	MSKCC	GRCh37	17	55334132	55334132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	44	453	0	ENST00000284073.2:c.29C>T	p.Ser10Leu	p.S10L	ENST00000284073	NM_138962.2	10	tCg/tTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs45476696		P-0049942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	445	690	0	ENST00000304494.5:c.457G>T	p.Asp153Tyr	p.D153Y	ENST00000304494	NM_000077.4	153	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs45476696		P-0049942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	445	690	0	ENST00000304494.5:c.457G>T	p.Asp153Tyr	p.D153Y	ENST00000304494	NM_000077.4	153	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0049942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	668	632	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39584327	39584327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	67	175	0	ENST00000262039.4:c.992C>G	p.Thr331Arg	p.T331R	ENST00000262039	NM_002647.2	331	aCa/aGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	490	742	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841505	156841505	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145222195		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	297	793	0	ENST00000524377.1:c.808G>A	p.Asp270Asn	p.D270N	ENST00000524377	NM_002529.3	270	Gat/Aat																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578193	28578193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs968020606		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	82	488	0	ENST00000241453.7:c.2978C>T	p.Ser993Leu	p.S993L	ENST00000241453	NM_004119.2	993	tCg/tTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476307	88476307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772244244		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	104	633	0	ENST00000360948.2:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000360948	NM_001012338.2	609	Gat/Aat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781386	135781386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs118203549		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	109	653	1	ENST00000298552.3:c.1579C>T	p.Gln527Ter	p.Q527*	ENST00000298552	NM_001162426.1	527	Cag/Tag																																																																														
ERG	2078	MSKCC	GRCh37	21	39817359	39817359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142996574		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	148	508	0	ENST00000288319.7:c.204G>A	p.Met68Ile	p.M68I	ENST00000288319	NM_182918.3	68	atG/atA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509235	106509235	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	458	651	0	ENST00000359195.3:c.1229G>A	p.Trp410Ter	p.W410*	ENST00000359195	NM_002649.2	410	tGg/tAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1424958105		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	64	372	1	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913357		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	127	381	0	ENST00000288602.6:c.1405G>A	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Aga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248423	212248423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771634130		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	64	356	0	ENST00000342788.4:c.3844C>T	p.Pro1282Ser	p.P1282S	ENST00000342788	NM_005235.2	1282	Cct/Tct																																																																														
KDR	3791	MSKCC	GRCh37	4	55972909	55972909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	102	512	0	ENST00000263923.4:c.1481G>A	p.Gly494Glu	p.G494E	ENST00000263923	NM_002253.2	494	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295786	212295786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751446160		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	104	530	0	ENST00000342788.4:c.2527G>A	p.Asp843Asn	p.D843N	ENST00000342788	NM_005235.2	843	Gat/Aat																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048115	180048115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	253	894	0	ENST00000261937.6:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000261937	NM_182925.4	720	Gaa/Aaa																																																																														
MPL	4352	MSKCC	GRCh37	1	43804359	43804359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749391587		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	206	564	1	ENST00000372470.3:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000372470	NM_005373.2	120	cGg/cAg																																																																														
FYN	2534	MSKCC	GRCh37	6	111995749	111995749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	227	431	0	ENST00000368678.4:c.1349G>A	p.Gly450Glu	p.G450E	ENST00000368678		450	gGa/gAa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486824	56486824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1023742896		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	129	545	2	ENST00000267101.3:c.1238C>T	p.Ser413Phe	p.S413F	ENST00000267101	NM_001982.3	413	tCc/tTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086067	16086067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	100	651	0	ENST00000281043.3:c.1243G>A	p.Glu415Lys	p.E415K	ENST00000281043	NM_005378.4	415	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29576001	29576001	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	98	285	0	ENST00000358273.4:c.3975-1G>A		p.X1325_splice	ENST00000358273	NM_001042492.2	1325																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295253	+	upstream_gene_variant	5'Flank	ONP	GAGG	GAGG	AAGA			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	168	483	0				ENST00000310581	NM_198253.2																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88576096	88576096	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371590703		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	131	743	1	ENST00000360948.2:c.1577C>T	p.Pro526Leu	p.P526L	ENST00000360948	NM_001012338.2	526	cCg/cTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106158205	106158205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	52	370	0	ENST00000380013.4:c.3106C>T	p.His1036Tyr	p.H1036Y	ENST00000380013	NM_001127208.2	1036	Cac/Tac																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256143	41256143	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060502358		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	113	472	0	ENST00000357654.3:c.437C>T	p.Ser146Phe	p.S146F	ENST00000357654	NM_007294.3	146	tCc/tTc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431343	121431343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	146	444	0	ENST00000257555.6:c.547G>A	p.Gly183Arg	p.G183R	ENST00000257555		183	Gga/Aga																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164599	36164599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	226	747	0	ENST00000300305.3:c.1276C>T	p.Pro426Ser	p.P426S	ENST00000300305		426	Ccg/Tcg																																																																														
NF1	4763	MSKCC	GRCh37	17	29679365	29679366	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	97	473	0	ENST00000358273.4:c.7548_7549delinsTT	p.Arg2517Ter	p.R2517*	ENST00000358273	NM_001042492.2	2516	ccCCga/ccTTga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188281	32188281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	142	972	0	ENST00000375023.3:c.1060G>A	p.Glu354Lys	p.E354K	ENST00000375023	NM_004557.3	354	Gag/Aag																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873161	136873161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	138	387	0	ENST00000241393.3:c.337C>T	p.His113Tyr	p.H113Y	ENST00000241393	NM_003467.2	113	Cat/Tat																																																																														
RET	5979	MSKCC	GRCh37	10	43597916	43597916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	145	827	0	ENST00000355710.3:c.464C>T	p.Pro155Leu	p.P155L	ENST00000355710	NM_020975.4	155	cCa/cTa																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112769006	112769006	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	60	320	0	ENST00000369452.4:c.1285G>A	p.Val429Ile	p.V429I	ENST00000369452	NM_007373.3	429	Gtt/Att																																																																														
EED	8726	MSKCC	GRCh37	11	85977134	85977134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	97	316	0	ENST00000263360.6:c.736C>T	p.Leu246Phe	p.L246F	ENST00000263360	NM_003797.3	246	Ctt/Ttt																																																																														
CBL	867	MSKCC	GRCh37	11	119148947	119148948	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	94	472	0	ENST00000264033.4:c.1167_1168delinsAA	p.Asp390Asn	p.D390N	ENST00000264033	NM_005188.3	389	aaGGat/aaAAat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715774	18715774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	131	291	0	ENST00000266497.5:c.3605C>G	p.Thr1202Ser	p.T1202S	ENST00000266497		1202	aCt/aGt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245234	46245234	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	181	495	0	ENST00000334344.6:c.3328G>T	p.Gly1110Ter	p.G1110*	ENST00000334344	NM_152641.2	1110	Gga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445952	49445952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	294	986	1	ENST00000301067.7:c.1514C>T	p.Pro505Leu	p.P505L	ENST00000301067	NM_003482.3	505	cCc/cTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576183	88576183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	102	698	1	ENST00000360948.2:c.1490G>A	p.Gly497Glu	p.G497E	ENST00000360948	NM_001012338.2	497	gGg/gAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576195	88576195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	102	682	2	ENST00000360948.2:c.1478C>T	p.Ser493Leu	p.S493L	ENST00000360948	NM_001012338.2	493	tCa/tTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862752	9862752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	189	621	2	ENST00000330684.3:c.2551G>A	p.Gly851Ser	p.G851S	ENST00000330684	NM_001134407.1	851	Ggc/Agc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641677	23641677	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	162	459	0	ENST00000261584.4:c.1798T>G	p.Leu600Val	p.L600V	ENST00000261584	NM_024675.3	600	Tta/Gta																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646443	23646443	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886039479		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	223	551	1	ENST00000261584.4:c.1424C>T	p.Ser475Leu	p.S475L	ENST00000261584	NM_024675.3	475	tCa/tTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351875	89351875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	180	803	0	ENST00000301030.4:c.1075C>T	p.Pro359Ser	p.P359S	ENST00000301030	NM_001256183.1	359	Cct/Tct																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245881	41245881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	83	481	0	ENST00000357654.3:c.1667A>G	p.Lys556Arg	p.K556R	ENST00000357654	NM_007294.3	556	aAa/aGa																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732896	74732897	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	125	477	1	ENST00000359995.5:c.346_347delinsAA	p.Gly116Lys	p.G116K	ENST00000359995	NM_001195427.1	116	GGa/AAa																																																																														
INSR	3643	MSKCC	GRCh37	19	7184643	7184643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1054595214		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	109	282	0	ENST00000302850.5:c.658C>T	p.Pro220Ser	p.P220S	ENST00000302850	NM_000208.2	220	Ccg/Tcg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10254541	10254542	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	195	580	0	ENST00000340748.4:c.2968_2969delinsTT	p.Pro990Phe	p.P990F	ENST00000340748		990	CCc/TTc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47690248	47690248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658187		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	178	403	0	ENST00000233146.2:c.1465G>A	p.Glu489Lys	p.E489K	ENST00000233146	NM_000251.2	489	Gaa/Aaa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209104616	209104616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	186	509	0	ENST00000345146.2:c.962A>G	p.Lys321Arg	p.K321R	ENST00000345146	NM_005896.2	321	aAa/aGa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483964	212483964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	64	443	1	ENST00000342788.4:c.2239C>T	p.Pro747Ser	p.P747S	ENST00000342788	NM_005235.2	747	Cct/Tct																																																																														
SRC	6714	MSKCC	GRCh37	20	36030004	36030004	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	257	765	0	ENST00000358208.4:c.1040-1G>A		p.X347_splice	ENST00000358208		347																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40743879	40743879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	185	545	0	ENST00000373198.4:c.3116C>T	p.Pro1039Leu	p.P1039L	ENST00000373198	NM_133170.3	1039	cCc/cTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164282	47164283	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	78	313	0	ENST00000409792.3:c.1843_1844delinsTT	p.Pro615Leu	p.P615L	ENST00000409792	NM_014159.6	615	CCa/TTa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670544	134670544	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774714501		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	259	801	1	ENST00000398015.3:c.455G>A	p.Gly152Glu	p.G152E	ENST00000398015	NM_004441.4	152	gGg/gAg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156522	55156522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	111	616	0	ENST00000257290.5:c.2923C>T	p.Pro975Ser	p.P975S	ENST00000257290	NM_006206.4	975	Cct/Tct																																																																														
TET2	54790	MSKCC	GRCh37	4	106156184	106156184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1472293244		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	71	388	0	ENST00000380013.4:c.1085C>T	p.Ala362Val	p.A362V	ENST00000380013	NM_001127208.2	362	gCt/gTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628136	187628136	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	145	651	0	ENST00000441802.2:c.2846T>A	p.Leu949Ter	p.L949*	ENST00000441802	NM_005245.3	949	tTa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112174113	112174113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	132	328	0	ENST00000257430.4:c.2822A>G	p.Glu941Gly	p.E941G	ENST00000257430	NM_000038.5	941	gAa/gGa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180039516	180039516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	281	913	0	ENST00000261937.6:c.3527G>A	p.Arg1176Lys	p.R1176K	ENST00000261937	NM_182925.4	1176	aGg/aAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32189083	32189084	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	70	620	1	ENST00000375023.3:c.470_471delinsAA	p.Arg157Gln	p.R157Q	ENST00000375023	NM_004557.3	157	cGG/cAA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117630039	117630039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	82	372	0	ENST00000368508.3:c.6487C>T	p.Pro2163Ser	p.P2163S	ENST00000368508	NM_002944.2	2163	Cca/Tca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117746771	117746771	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776963776		P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	135	334	0	ENST00000368508.3:c.49C>T	p.Leu17Phe	p.L17F	ENST00000368508	NM_002944.2	17	Ctt/Ttt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6439790	6439791	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	156	375	1	ENST00000356142.4:c.316_317delinsTT	p.Pro106Phe	p.P106F	ENST00000356142	NM_018890.3	106	CCt/TTt																																																																														
HGF	3082	MSKCC	GRCh37	7	81346607	81346607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	138	361	0	ENST00000222390.5:c.1346G>A	p.Gly449Glu	p.G449E	ENST00000222390	NM_000601.4	449	gGa/gAa																																																																														
MET	4233	MSKCC	GRCh37	7	116339461	116339461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	151	380	1	ENST00000397752.3:c.323C>T	p.Ser108Leu	p.S108L	ENST00000397752	NM_000245.2	108	tCa/tTa																																																																														
TEK	7010	MSKCC	GRCh37	9	27206601	27206601	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	152	413	0	ENST00000380036.4:c.2386T>A	p.Phe796Ile	p.F796I	ENST00000380036	NM_000459.3	796	Ttc/Atc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229688	98229688	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	79	225	0	ENST00000331920.6:c.2270T>G	p.Phe757Cys	p.F757C	ENST00000331920	NM_000264.3	757	tTt/tGt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135782165	135782166	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0050267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	143	477	0	ENST00000298552.3:c.1390_1391delinsAA	p.Gly464Asn	p.G464N	ENST00000298552	NM_001162426.1	464	GGt/AAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0050314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	278	393	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0050314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	77	302	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194670	29194670	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772256235		P-0050314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	46	711	0	ENST00000240100.2:c.1058G>A	p.Arg353Gln	p.R353Q	ENST00000240100	NM_001394.6	353	cGg/cAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245259	46245259	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	294	499	0	ENST00000334344.6:c.3353A>G	p.Gln1118Arg	p.Q1118R	ENST00000334344	NM_152641.2	1118	cAg/cGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431030	49431030	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	397	669	0	ENST00000301067.7:c.10109A>T	p.Gln3370Leu	p.Q3370L	ENST00000301067	NM_003482.3	3370	cAg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577588	7577602	+	inframe_deletion	In_Frame_Del	DEL	GGTGGTACAGTCAGA	GGTGGTACAGTCAGA	-			P-0050314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	426	534	0	ENST00000269305.4:c.679_693del	p.Ser227_Thr231del	p.S227_T231del	ENST00000269305	NM_001126112.2	227	TCTGACTGTACCACC/-																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965500	18966522	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTCGACCTCCTTTGACAGGTACGTCTTCTCCCATCACTGCCCCCTGTTCCCTGGTTGCCACCTGTGGCATCTTTATGAGCCCTCCCCGTCACTGTGGAGTGGGGTTCCCCACCCAGCTCTGCAAACTCAGGATGTCGGAGAGGCGGCCACAGCTGTGCGTGTCGCCAACCCCAAACCCTCCTCACAGGATGCAGAGCGCATTGAAAACGTTTGCCGTGGATGAGACCTCGGTGTCTGGCTACATCTACCACAAGCTGTTGGGCCACGAGGTGGAGGACGTAATCATCAAGTGCCAGCTGCCCAAGCGCTTCACGGCGCAGGGCCTCCCCGACCTCAACCACTCCCAGGTGCGCGCCGTCCTCAGCGCGCGGGGCCTCGCCCATGGGCCGGGACGCAAGCGGAGGCTGCCCCTAACGGCCGCTTGTATTGAAGGTTTATGCCGTGAAGACTGTGCTGCAAAGACCACTGAGCCTGATCCAGGGCCCGCCAGGCACGGGGAAGACGGTGACGTCGGCCACCATCGTCTACCACCTGGCCCGGCAAGGCAACGGGTAGGGCTGACACGGCCCTTGCGGGCAAGACCCGGGAGGGCTTTAGGGTGGCCAGATGGAAGGCCTGGTGCTGGGAGCCTTGGGCTCTGTCACACCGAAGAGAGCACGTGGCGGGTAGTGTCGCCATGGTGCCTACCGCTCTCTATGTGACATTATTCGTGTCAGCTCCAACCTTAGGATTGCATTTTAGTAACCAGGTCTGCTACTGGTTTAGAAAACTGGGGGCAGGGGGGGCATGGCTGCAGCAGCGTGAGTTCCGTGTGCGGCACTTTATAGTGTGGCGGGATGGTGCAAGTTCCAGCCTTGGCATTGCTTGCGGTGGGTAGAGCTGTGAAGCCTGGGCTGTCTGGATCTGAGCTCCTTCGGCATCGTGTCATTACTGCCTGTTAAAAATGTCAGGAGTTTAAGGCCAGCCTGAACAGGGTGAGACGTCTCTACAAAAAAAAAATTCAGAAATTAGCTGGGGGTAGT	AGTCGACCTCCTTTGACAGGTACGTCTTCTCCCATCACTGCCCCCTGTTCCCTGGTTGCCACCTGTGGCATCTTTATGAGCCCTCCCCGTCACTGTGGAGTGGGGTTCCCCACCCAGCTCTGCAAACTCAGGATGTCGGAGAGGCGGCCACAGCTGTGCGTGTCGCCAACCCCAAACCCTCCTCACAGGATGCAGAGCGCATTGAAAACGTTTGCCGTGGATGAGACCTCGGTGTCTGGCTACATCTACCACAAGCTGTTGGGCCACGAGGTGGAGGACGTAATCATCAAGTGCCAGCTGCCCAAGCGCTTCACGGCGCAGGGCCTCCCCGACCTCAACCACTCCCAGGTGCGCGCCGTCCTCAGCGCGCGGGGCCTCGCCCATGGGCCGGGACGCAAGCGGAGGCTGCCCCTAACGGCCGCTTGTATTGAAGGTTTATGCCGTGAAGACTGTGCTGCAAAGACCACTGAGCCTGATCCAGGGCCCGCCAGGCACGGGGAAGACGGTGACGTCGGCCACCATCGTCTACCACCTGGCCCGGCAAGGCAACGGGTAGGGCTGACACGGCCCTTGCGGGCAAGACCCGGGAGGGCTTTAGGGTGGCCAGATGGAAGGCCTGGTGCTGGGAGCCTTGGGCTCTGTCACACCGAAGAGAGCACGTGGCGGGTAGTGTCGCCATGGTGCCTACCGCTCTCTATGTGACATTATTCGTGTCAGCTCCAACCTTAGGATTGCATTTTAGTAACCAGGTCTGCTACTGGTTTAGAAAACTGGGGGCAGGGGGGGCATGGCTGCAGCAGCGTGAGTTCCGTGTGCGGCACTTTATAGTGTGGCGGGATGGTGCAAGTTCCAGCCTTGGCATTGCTTGCGGTGGGTAGAGCTGTGAAGCCTGGGCTGTCTGGATCTGAGCTCCTTCGGCATCGTGTCATTACTGCCTGTTAAAAATGTCAGGAGTTTAAGGCCAGCCTGAACAGGGTGAGACGTCTCTACAAAAAAAAAATTCAGAAATTAGCTGGGGGTAGT	-			P-0050314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	812	610	0	ENST00000262803.5:c.1247_1545-212del		p.X416_splice	ENST00000262803	NM_002911.3	416																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32185041	32185055	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCCTGGTGGGGCGG	ATCCTGGTGGGGCGG	-			P-0050314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	297	532	0	ENST00000375023.3:c.1625-12_1627del		p.X542_splice	ENST00000375023	NM_004557.3	542																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411504	63411504	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	454	668	0	ENST00000330258.3:c.1663G>T	p.Glu555Ter	p.E555*	ENST00000330258	NM_152424.3	555	Gag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610578	10610579	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0050314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	407	760	0	ENST00000171111.5:c.131_132delinsT	p.Pro44LeufsTer24	p.P44Lfs*24	ENST00000171111	NM_203500.1	44	cCC/cT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0050489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	210	625	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0050489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	210	625	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0050489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	210	625	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TBX3	6926	MSKCC	GRCh37	12	115110022	115110023	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0050489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	71	740	1	ENST00000257566.3:c.1855_1856delinsAA	p.Ala619Asn	p.A619N	ENST00000257566	NM_016569.3	619	GCc/AAc																																																																														
CDH1	999	MSKCC	GRCh37	16	68847267	68847268	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAGTGACTG			P-0050489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	113	511	0	ENST00000261769.5:c.1191_1199dup	p.Thr399_Asp400insGluValThr	p.T399_D400insEVT	ENST00000261769	NM_004360.3	397	aaa/aAAGTGACTGaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087889	27087910	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCGGCCACCCAGTGGCCAGT	CCTCGGCCACCCAGTGGCCAGT	GCCAGC			P-0050489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	229	669	2	ENST00000324856.7:c.2176_2197delinsGCCAGC	p.Pro726AlafsTer11	p.P726Afs*11	ENST00000324856	NM_006015.4	726	CCTCGGCCACCCAGTGGCCAGTcg/GCCAGCcg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	530	865	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	47	258	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876660333		P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	314	898	0	ENST00000269305.4:c.815T>G	p.Val272Gly	p.V272G	ENST00000269305	NM_001126112.2	272	gTg/gGg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190872	185190872	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	52	898	1	ENST00000265026.3:c.1753C>T	p.Arg585Ter	p.R585*	ENST00000265026	NM_004721.4	585	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258977	16258977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751501193		P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	166	843	2	ENST00000375759.3:c.6242G>A	p.Arg2081Gln	p.R2081Q	ENST00000375759	NM_015001.2	2081	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112175074	112175074	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	131	356	0	ENST00000257430.4:c.3784del	p.Tyr1262IlefsTer3	p.Y1262Ifs*3	ENST00000257430	NM_000038.5	1261	acT/ac																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524304	176524304	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	329	859	0	ENST00000292408.4:c.2165T>A	p.Met722Lys	p.M722K	ENST00000292408	NM_213647.1	722	aTg/aAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411496	63411497	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	388	1031	0	ENST00000330258.3:c.1670_1671del	p.Glu557GlyfsTer22	p.E557Gfs*22	ENST00000330258	NM_152424.3	557	gAG/g																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923802	39923808	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCTGG	CCTCTGG	-			P-0047718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	73	601	0	ENST00000378444.4:c.3283_3289del	p.Pro1095ThrfsTer16	p.P1095Tfs*16	ENST00000378444	NM_001123385.1	1095	CCAGAGGac/ac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120612003	120612004	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-	rs372504208		P-0001339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	12	41	0	ENST00000256646.2:c.17_18del	p.Pro6ArgfsTer27	p.P6Rfs*27	ENST00000256646	NM_024408.3	6	cCC/c																																																																														
TET1	80312	MSKCC	GRCh37	10	70451263	70451263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			461	177	397	0	ENST00000373644.4:c.6103C>T	p.His2035Tyr	p.H2035Y	ENST00000373644	NM_030625.2	2035	Cac/Tac																																																																														
TSC2	7249	MSKCC	GRCh37	16	2098680	2098680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1479698846		P-0001339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			818	292	408	0	ENST00000219476.3:c.64G>A	p.Gly22Arg	p.G22R	ENST00000219476	NM_000548.3	22	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			65	630	872	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	89	256	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1211642532		P-0001531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	103	258	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29550460	29550460	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs763983337		P-0001531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			25	94	218	0	ENST00000358273.4:c.1722-2A>G		p.X574_splice	ENST00000358273	NM_001042492.2	574																																																																															
AR	367	MSKCC	GRCh37	X	66941796	66941796	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001531-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	117	269	0	ENST00000374690.3:c.2440T>G	p.Phe814Val	p.F814V	ENST00000374690	NM_000044.3	814	Ttc/Gtc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0001822-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	365	316	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0001939-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			162	65	197	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3121074	3121074	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001939-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			596	113	793	0	ENST00000078429.4:c.977C>G	p.Ser326Ter	p.S326*	ENST00000078429	NM_002067.2	326	tCa/tGa																																																																														
AKT2	208	MSKCC	GRCh37	19	40739804	40739804	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001939-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			746	148	984	0	ENST00000392038.2:c.1421C>G	p.Ser474Cys	p.S474C	ENST00000392038	NM_001626.4	474	tCc/tGc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176085811	176085812	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0001939-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			518	55	246	0	ENST00000367669.3:c.974_975del	p.Ile325AsnfsTer2	p.I325Nfs*2	ENST00000367669	NM_022457.5	325	aTT/a																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936788	78936788	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001939-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			754	104	776	0	ENST00000306801.3:c.3870C>G	p.Ile1290Met	p.I1290M	ENST00000306801	NM_020761.2	1290	atC/atG																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371726	55371726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001939-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			698	90	575	0	ENST00000297316.4:c.416C>T	p.Pro139Leu	p.P139L	ENST00000297316	NM_022454.3	139	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0003940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	77	360	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
SDHB	6390	MSKCC	GRCh37	1	17355148	17355148	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs978525560		P-0003940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	118	339	0	ENST00000375499.3:c.370G>T	p.Val124Phe	p.V124F	ENST00000375499	NM_003000.2	124	Gtc/Ttc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527598	157527598	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	73	230	0	ENST00000346085.5:c.5323A>T	p.Lys1775Ter	p.K1775*	ENST00000346085	NM_020732.3	1775	Aag/Tag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2202730	2202730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	75	420	0	ENST00000398665.3:c.739C>T	p.Pro247Ser	p.P247S	ENST00000398665	NM_032482.2	247	Cct/Tct																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196600	67196601	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0003940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			878	80	265	0	ENST00000312629.5:c.131_132del	p.His44LeufsTer2	p.H44Lfs*2	ENST00000312629	NM_003952.2	43	ggACac/ggac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	116	448	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	14	489	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	97	361	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	111	409	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198268383	198268383	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1172363633		P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	120	465	1	ENST00000335508.6:c.1645C>T	p.Arg549Cys	p.R549C	ENST00000335508	NM_012433.2	549	Cgt/Tgt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149457764	149457764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	45	299	0	ENST00000286301.3:c.640C>T	p.Arg214Trp	p.R214W	ENST00000286301	NM_005211.3	214	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108216611	108216611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201958469		P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	81	410	0	ENST00000278616.4:c.8560C>T	p.Arg2854Cys	p.R2854C	ENST00000278616	NM_000051.3	2854	Cgc/Tgc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041046	29041046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	108	370	0	ENST00000282397.4:c.382A>G	p.Ile128Val	p.I128V	ENST00000282397	NM_002019.4	128	Att/Gtt																																																																														
NF1	4763	MSKCC	GRCh37	17	29486104	29486104	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	189	355	0	ENST00000358273.4:c.282del	p.Ala95LeufsTer8	p.A95Lfs*8	ENST00000358273	NM_001042492.2	94	cTt/ct																																																																														
APC	324	MSKCC	GRCh37	5	112175595	112175613	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGTAAAACACCTCCACC	GAAGTAAAACACCTCCACC	-			P-0004494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	98	536	1	ENST00000257430.4:c.4304_4322del	p.Arg1435AsnfsTer32	p.R1435Nfs*32	ENST00000257430	NM_000038.5	1435	aGAAGTAAAACACCTCCACCa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	365	297	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	298	219	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255790	16255790	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	222	481	0	ENST00000375759.3:c.3055C>T	p.Gln1019Ter	p.Q1019*	ENST00000375759	NM_015001.2	1019	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105727	27105727	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772578230		P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	244	462	2	ENST00000324856.7:c.5338G>A	p.Glu1780Lys	p.E1780K	ENST00000324856	NM_006015.4	1780	Gaa/Aaa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936379	49936379	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	608	725	0	ENST00000296474.3:c.1469C>A	p.Ser490Ter	p.S490*	ENST00000296474	NM_002447.2	490	tCa/tAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178143	56178143	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	176	427	2	ENST00000399503.3:c.3116C>A	p.Ser1039Ter	p.S1039*	ENST00000399503	NM_005921.1	1039	tCa/tAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874386	151874386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	411	438	0	ENST00000262189.6:c.8152G>A	p.Glu2718Lys	p.E2718K	ENST00000262189	NM_170606.2	2718	Gaa/Aaa																																																																														
POLE	5426	MSKCC	GRCh37	12	133202720	133202720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	284	590	0	ENST00000320574.5:c.6514G>C	p.Asp2172His	p.D2172H	ENST00000320574	NM_006231.2	2172	Gac/Cac																																																																														
POLE	5426	MSKCC	GRCh37	12	133237716	133237716	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	217	584	1	ENST00000320574.5:c.2899G>C	p.Glu967Gln	p.E967Q	ENST00000320574	NM_006231.2	967	Gag/Cag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28901682	28901682	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	170	394	0	ENST00000282397.4:c.2713C>G	p.Leu905Val	p.L905V	ENST00000282397	NM_002019.4	905	Ctg/Gtg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0005382-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			533	332	788	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256425	46256425	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1200320359		P-0005382-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			705	93	548	0	ENST00000371998.3:c.653G>A	p.Arg218His	p.R218H	ENST00000371998		218	cGc/cAc																																																																														
AKT1	207	MSKCC	GRCh37	14	105258963	105258963	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005382-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			829	142	788	0	ENST00000349310.3:c.18T>G	p.Ile6Met	p.I6M	ENST00000349310	NM_001014432.1	6	atT/atG																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557794	187557795	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005382-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			620	70	462	0	ENST00000441802.2:c.3916dup	p.Thr1306AsnfsTer16	p.T1306Nfs*16	ENST00000441802	NM_005245.3	1306	act/aAct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005459-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	99	236	0				ENST00000310581	NM_198253.2																																																																																
FGF3	2248	MSKCC	GRCh37	11	69625249	69625249	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781935233		P-0005459-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	320	631	0	ENST00000334134.2:c.544G>A	p.Val182Met	p.V182M	ENST00000334134	NM_005247.2	182	Gtg/Atg																																																																														
ATM	472	MSKCC	GRCh37	11	108117846	108117846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005459-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	205	374	0	ENST00000278616.4:c.1057T>C	p.Cys353Arg	p.C353R	ENST00000278616	NM_000051.3	353	Tgt/Cgt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40474431	40474431	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs193922721		P-0005459-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			614	290	475	0	ENST00000264657.5:c.1970A>G	p.Tyr657Cys	p.Y657C	ENST00000264657	NM_139276.2	657	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577409	7577572	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACAT	GAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACAT	-			P-0005459-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	117	256	0	ENST00000269305.4:c.709_782+90del		p.X237_splice	ENST00000269305	NM_001126112.2	237																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	88	457	0	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	69	431	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3790455	3790455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587783490		P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	155	488	1	ENST00000262367.5:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000262367	NM_004380.2	1360	Cga/Tga																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582302	119582302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	232	480	0	ENST00000316626.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000316626		367	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174438	112174438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs863225340		P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	152	491	1	ENST00000257430.4:c.3147G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tgG/tgA																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225411	26225411	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	262	792	0	ENST00000360408.1:c.29A>G	p.Lys10Arg	p.K10R	ENST00000360408	NM_003532.2	10	aAa/aGa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138083	64138083	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777650305		P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	151	365	0	ENST00000334205.4:c.2006G>A	p.Arg669Gln	p.R669Q	ENST00000334205	NM_003942.2	669	cGg/cAg																																																																														
MED12	9968	MSKCC	GRCh37	X	70344938	70344938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	139	665	0	ENST00000374080.3:c.2168G>T	p.Gly723Val	p.G723V	ENST00000374080		723	gGg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175508	112175509	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	70	432	0	ENST00000257430.4:c.4219_4220del	p.Ser1407Ter	p.S1407*	ENST00000257430	NM_000038.5	1406	cAG/c																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115712	8115875	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCG	CCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCG	-			P-0006847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	98	313	0	ENST00000346208.3:c.1062_1225del	p.Thr355GlnfsTer97	p.T355Qfs*97	ENST00000346208		353	cCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCG/c																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274827	38274827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	205	284	0	ENST00000425967.3:c.1753G>C	p.Asp585His	p.D585H	ENST00000425967	NM_001174067.1	585	Gat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057999	27058000	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCTCGACGCTCTC			P-0006847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	77	197	0	ENST00000324856.7:c.1710_1723dup	p.Gln575ProfsTer49	p.Q575Pfs*49	ENST00000324856	NM_006015.4	569	-/CCCTCGACGCTCTC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	28	381	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0006859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	22	380	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266486	41266486	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs775104326		P-0006859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	47	323	0	ENST00000349496.5:c.283C>T	p.Arg95Ter	p.R95*	ENST00000349496	NM_001904.3	95	Cga/Tga																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839983	27839983	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	69	692	0	ENST00000328488.2:c.111G>C	p.Lys37Asn	p.K37N	ENST00000328488	NM_003533.2	37	aaG/aaC																																																																														
NUP93	9688	MSKCC	GRCh37	16	56875722	56875722	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs768650810		P-0006859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	43	447	0	ENST00000308159.5:c.2326C>T	p.Arg776Ter	p.R776*	ENST00000308159	NM_014669.4	776	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68842705	68842705	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	110	473	0	ENST00000261769.5:c.641T>A	p.Leu214Gln	p.L214Q	ENST00000261769	NM_004360.3	214	cTg/cAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969882	81969882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	44	480	1	ENST00000359376.3:c.2951G>A	p.Arg984His	p.R984H	ENST00000359376	NM_002661.3	984	cGc/cAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075200	16075200	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1240701348		P-0006859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	32	309	0	ENST00000268712.3:c.352C>G	p.His118Asp	p.H118D	ENST00000268712	NM_006311.3	118	Cat/Gat																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45375016	45375016	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1226662382		P-0006859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	29	241	0	ENST00000262160.6:c.827C>T	p.Ser276Leu	p.S276L	ENST00000262160	NM_005901.5	276	tCg/tTg																																																																														
CD276	80381	MSKCC	GRCh37	15	73995319	73995319	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148316620		P-0006931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	18	165	0	ENST00000318443.5:c.625C>T	p.Arg209Trp	p.R209W	ENST00000318443	NM_001024736.1	209	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	377	404	0	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0007135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	162	417	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0007135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	234	449	2	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198283245	198283245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	32	472	0	ENST00000335508.6:c.483G>C	p.Leu161Phe	p.L161F	ENST00000335508	NM_012433.2	161	ttG/ttC																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298129	15298129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	40	507	2	ENST00000263388.2:c.1627G>A	p.Asp543Asn	p.D543N	ENST00000263388	NM_000435.2	543	Gat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0007745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	262	367	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	264	327	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0007745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	115	289	0	ENST00000274335.5:c.1392_1403del	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0008155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	162	246	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0008155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	369	340	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916927	178916933	+	protein_altering_variant	In_Frame_Del	DEL	TAGGCAA	TAGGCAA	G			P-0008155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	615	472	0	ENST00000263967.3:c.314_320delinsG	p.Val105_Asn107delinsGly	p.V105_N107delinsG	ENST00000263967	NM_006218.2	105	gTAGGCAAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0008423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	263	531	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376093	225376093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			604	127	566	1	ENST00000264414.4:c.861G>A	p.Met287Ile	p.M287I	ENST00000264414	NM_003590.4	287	atG/atA																																																																														
ALK	238	MSKCC	GRCh37	2	29498023	29498023	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs758860363		P-0008423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			718	194	586	1	ENST00000389048.3:c.1983C>A	p.Asn661Lys	p.N661K	ENST00000389048	NM_004304.4	661	aaC/aaA																																																																														
CDH1	999	MSKCC	GRCh37	16	68849655	68849655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	175	392	0	ENST00000261769.5:c.1561del	p.Ile521Ter	p.I521*	ENST00000261769	NM_004360.3	520	Aaa/aa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937580	32937611	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTCAGAAGATTATTCTTCATGGAGCAGAAC	TGGTCAGAAGATTATTCTTCATGGAGCAGAAC	-			P-0008423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	199	503	0	ENST00000380152.3:c.8245_8276del	p.Gln2749GlyfsTer4	p.Q2749Gfs*4	ENST00000380152		2747	gtTGGTCAGAAGATTATTCTTCATGGAGCAGAACtg/gttg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40498589	40498589	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0009524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	328	478	0	ENST00000264657.5:c.271C>T	p.Gln91Ter	p.Q91*	ENST00000264657	NM_139276.2	91	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629895	187629895	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531890135		P-0009524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	314	456	0	ENST00000441802.2:c.1087G>A	p.Gly363Arg	p.G363R	ENST00000441802	NM_005245.3	363	Ggg/Agg																																																																														
HGF	3082	MSKCC	GRCh37	7	81372768	81372768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	238	371	0	ENST00000222390.5:c.766G>T	p.Asp256Tyr	p.D256Y	ENST00000222390	NM_000601.4	256	Gat/Tat																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589556	67589591	+	inframe_deletion	In_Frame_Del	DEL	ATAATATTGAAGCTGTAGGGAAAAAATTACATGAAT	ATAATATTGAAGCTGTAGGGAAAAAATTACATGAAT	-			P-0009524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	160	344	0	ENST00000274335.5:c.1323_1358del	p.Ile442_Asn453del	p.I442_N453del	ENST00000274335		440	gATAATATTGAAGCTGTAGGGAAAAAATTACATGAATat/gat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101195	27101205	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCAAGGCAC	CAGCAAGGCAC	-			P-0009524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	227	442	0	ENST00000324856.7:c.4479_4489del	p.Gln1493HisfsTer6	p.Q1493Hfs*6	ENST00000324856	NM_006015.4	1493	CAGCAAGGCACc/c																																																																														
RET	5979	MSKCC	GRCh37	10	43615145	43615146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	282	493	0	ENST00000355710.3:c.2562dup	p.Ala855CysfsTer30	p.A855Cfs*30	ENST00000355710	NM_020975.4	853	-/T																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592122	67592140	+	protein_altering_variant	In_Frame_Del	DEL	TCTTGTCCGGGAGAGCAGT	TCTTGTCCGGGAGAGCAGT	ACTA			P-0009524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	222	398	0	ENST00000274335.5:c.1938_1956delinsACTA	p.Phe646_Ser652delinsLeuLeu	p.F646_S652delinsLL	ENST00000274335		646	ttTCTTGTCCGGGAGAGCAGT/ttACTA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	230	391	2	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	351	543	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199553	16199553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	86	509	3	ENST00000375759.3:c.326G>T	p.Gly109Val	p.G109V	ENST00000375759	NM_015001.2	109	gGa/gTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671979	30671979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	230	724	0	ENST00000376406.3:c.4981G>C	p.Glu1661Gln	p.E1661Q	ENST00000376406	NM_014641.2	1661	Gag/Cag																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137528150	137528150	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	91	518	1	ENST00000367739.4:c.150C>G	p.Tyr50Ter	p.Y50*	ENST00000367739	NM_000416.2	50	taC/taG																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229522	98229522	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	38	668	4	ENST00000331920.6:c.2436C>A	p.Tyr812Ter	p.Y812*	ENST00000331920	NM_000264.3	812	taC/taA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344720	118344720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	158	629	0	ENST00000534358.1:c.2846C>G	p.Thr949Ser	p.T949S	ENST00000534358	NM_005933.3	949	aCt/aGt																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630670	90630670	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	104	695	0	ENST00000330062.3:c.815+1G>C		p.X272_splice	ENST00000330062	NM_002168.2	272																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857771	9857771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	233	742	0	ENST00000330684.3:c.3630C>A	p.Asn1210Lys	p.N1210K	ENST00000330684	NM_001134407.1	1210	aaC/aaA																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371819	45371819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	56	374	0	ENST00000262160.6:c.1172C>A	p.Ala391Asp	p.A391D	ENST00000262160	NM_005901.5	391	gCt/gAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498424	89498424	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1176464192		P-0011025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	214	453	1	ENST00000336596.2:c.2396G>A	p.Arg799His	p.R799H	ENST00000336596	NM_005233.5	799	cGc/cAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15273367	15273367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1320	228	497	0	ENST00000263388.2:c.5822C>T	p.Ser1941Leu	p.S1941L	ENST00000263388	NM_000435.2	1941	tCa/tTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678068	117678091	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATACAAGCGACTATAGAGGAAAA	AATACAAGCGACTATAGAGGAAAA	-			P-0011025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	87	318	0	ENST00000368508.3:c.3855-13_3865del		p.X1285_splice	ENST00000368508	NM_002944.2	1285																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479165	50479166	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0011025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	159	235	0	ENST00000394963.4:c.14_15del	p.Ala5GlyfsTer125	p.A5Gfs*125	ENST00000394963	NM_003076.4	5	GCg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0011027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	343	551	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0011027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	140	238	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662409	227662409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	54	262	0	ENST00000305123.5:c.1046C>T	p.Pro349Leu	p.P349L	ENST00000305123	NM_005544.2	349	cCc/cTc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152420067	152420067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141662120		P-0011027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	77	431	2	ENST00000206249.3:c.1754C>T	p.Thr585Met	p.T585M	ENST00000206249	NM_000125.3	585	aCg/aTg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207099	1207099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	222	450	0	ENST00000326873.7:c.187G>A	p.Val63Met	p.V63M	ENST00000326873	NM_000455.4	63	Gtg/Atg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117911	70117920	+	frameshift_variant	Frame_Shift_Del	DEL	TACCCGCACT	TACCCGCACT	-			P-0011027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	111	243	0	ENST00000245479.2:c.380_389del	p.Tyr127CysfsTer17	p.Y127Cfs*17	ENST00000245479	NM_000346.3	127	TACCCGCACTtg/tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578245	7578245	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780072		P-0012114-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	67	816	1	ENST00000269305.4:c.604C>T	p.Arg202Cys	p.R202C	ENST00000269305	NM_001126112.2	202	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519992		P-0012114-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	145	825	1	ENST00000269305.4:c.641A>T	p.His214Leu	p.H214L	ENST00000269305	NM_001126112.2	214	cAt/cTt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519742		P-0012125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	24	566	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	481	480	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629325	187629325	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs550890340		P-0013118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	85	700	0	ENST00000441802.2:c.1657G>C	p.Val553Leu	p.V553L	ENST00000441802	NM_005245.3	553	Gtc/Ctc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584504	48584504	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	399	376	0	ENST00000342988.3:c.678del	p.Ser227ValfsTer14	p.S227Vfs*14	ENST00000342988	NM_005359.5	226	gCc/gc																																																																														
CDH1	999	MSKCC	GRCh37	16	68857497	68857501	+	frameshift_variant	Frame_Shift_Ins	INS	TGGGG	TGGGG	CGGGGA			P-0013118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	325	512	0	ENST00000261769.5:c.2132_2136delinsCGGGGA	p.Leu711ProfsTer37	p.L711Pfs*37	ENST00000261769	NM_004360.3	711	cTGGGG/cCGGGGA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0014525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	513	961	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880957	134880957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	154	684	0	ENST00000398015.3:c.1520G>T	p.Arg507Leu	p.R507L	ENST00000398015	NM_004441.4	507	cGt/cTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913444		P-0014525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	406	645	0	ENST00000275493.2:c.2582T>G	p.Leu861Arg	p.L861R	ENST00000275493	NM_005228.3	861	cTg/cGg																																																																														
RB1	5925	MSKCC	GRCh37	13	48937066	48937068	+	stop_gained	Nonsense_Mutation	ONP	TAA	TAA	AAG			P-0014525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	100	424	1	ENST00000267163.4:c.834_836delinsAAG	p.Cys278_Lys279delinsTer	p.C278_K279delins*	ENST00000267163	NM_000321.2	278	tgTAAa/tgAAGa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0014867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	28	271	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0014867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	221	720	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883551	37883551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	76	683	0	ENST00000269571.5:c.3163G>T	p.Gly1055Cys	p.G1055C	ENST00000269571		1055	Ggc/Tgc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	242	404	0	ENST00000346208.3:c.878T>G	p.Met293Arg	p.M293R	ENST00000346208		293	aTg/aGg																																																																														
MED12	9968	MSKCC	GRCh37	X	70354255	70354255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	204	573	0	ENST00000374080.3:c.4666G>A	p.Glu1556Lys	p.E1556K	ENST00000374080		1556	Gag/Aag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060780	38060797	+	inframe_deletion	In_Frame_Del	DEL	GTTGATGGAGAACGGGTG	GTTGATGGAGAACGGGTG	-			P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	323	835	0	ENST00000250448.2:c.1192_1209del	p.His398_Asn403del	p.H398_N403del	ENST00000250448	NM_004496.3	398	CACCCGTTCTCCATCAAC/-																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061189	38061206	+	inframe_deletion	In_Frame_Del	DEL	TTGAAGCGCTTCTGGCGG	TTGAAGCGCTTCTGGCGG	-			P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	94	314	0	ENST00000250448.2:c.783_800del	p.Arg262_Lys267del	p.R262_K267del	ENST00000250448	NM_004496.3	261	cgCCGCCAGAAGCGCTTCAAg/cgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226592	2226592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376766280		P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	50	612	0	ENST00000398665.3:c.4072G>A	p.Gly1358Ser	p.G1358S	ENST00000398665	NM_032482.2	1358	Ggc/Agc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636989	176636989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	83	518	1	ENST00000439151.2:c.1589C>T	p.Pro530Leu	p.P530L	ENST00000439151	NM_022455.4	530	cCa/cTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396278	139396278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	210	603	1	ENST00000277541.6:c.5560C>A	p.Arg1854Ser	p.R1854S	ENST00000277541	NM_017617.3	1854	Cgc/Agc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	104	541	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115904	8115904	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	124	532	0	ENST00000346208.3:c.1251del	p.Thr418ArgfsTer57	p.T418Rfs*57	ENST00000346208		417	aCc/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658483		P-0015437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	86	1154	2	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974821	15974821	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	29	636	0	ENST00000268712.3:c.4054del	p.His1352MetfsTer9	p.H1352Mfs*9	ENST00000268712	NM_006311.3	1352	Cat/at																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0017016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	226	534	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	748	860	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
RET	5979	MSKCC	GRCh37	10	43597936	43597936	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	161	756	0	ENST00000355710.3:c.487del	p.Arg163GlyfsTer61	p.R163Gfs*61	ENST00000355710	NM_020975.4	162	Ccc/cc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94918445	94918445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	223	513	0	ENST00000536441.1:c.737C>T	p.Ala246Val	p.A246V	ENST00000536441	NM_144665.3	246	gCa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416383	49416384	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGATTTTCTCCCGCGGTTGGC			P-0017016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	28	366	0	ENST00000301067.7:c.16327_16328insGCCAACCGCGGGAGAAAATCT	p.Ile5442_Tyr5443insCysGlnProArgGluLysIle	p.I5442_Y5443insCQPREKI	ENST00000301067	NM_003482.3	5443	tac/tGCCAACCGCGGGAGAAAATCTac																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78681761	78681761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	244	524	1	ENST00000306801.3:c.469C>T	p.Arg157Trp	p.R157W	ENST00000306801	NM_020761.2	157	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129664	11129664	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	476	583	0	ENST00000344626.4:c.2470A>T	p.Lys824Ter	p.K824*	ENST00000344626	NM_003072.3	824	Aag/Tag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38135897	38135897	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	332	617	0	ENST00000317025.8:c.3794G>C	p.Cys1265Ser	p.C1265S	ENST00000317025	NM_023034.1	1265	tGt/tCt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519839		P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	250	262	1	ENST00000274335.5:c.1678G>T	p.Asp560Tyr	p.D560Y	ENST00000274335		560	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	387	438	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	110	267	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	259	197	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056342	27056343	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	112	194	0	ENST00000324856.7:c.1338_1339del	p.Gln449AlafsTer173	p.Q449Afs*173	ENST00000324856	NM_006015.4	446	tcTTat/tcat																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112017	115112017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1156821376		P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	121	564	3	ENST00000257566.3:c.1723G>A	p.Ala575Thr	p.A575T	ENST00000257566	NM_016569.3	575	Gcg/Acg																																																																														
CCNE1	898	MSKCC	GRCh37	19	30303882	30303882	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	217	474	1	ENST00000262643.3:c.118C>T	p.Gln40Ter	p.Q40*	ENST00000262643	NM_001238.2	40	Cag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213921	66213921	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	47	344	1	ENST00000273854.3:c.2509G>T	p.Gly837Ter	p.G837*	ENST00000273854	NM_004439.5	837	Gga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404331	139404331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	138	544	0	ENST00000277541.6:c.2823C>G	p.Phe941Leu	p.F941L	ENST00000277541	NM_017617.3	941	ttC/ttG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	37	1251	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0018972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	13	761	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971166	21971167	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	56	1168	0	ENST00000304494.5:c.191dup	p.Leu65AlafsTer55	p.L65Afs*55	ENST00000304494	NM_000077.4	64	ctg/ctTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971166	21971167	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	56	1168	0	ENST00000304494.5:c.191dup	p.Leu65AlafsTer55	p.L65Afs*55	ENST00000304494	NM_000077.4	64	ctg/ctTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971166	21971167	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	56	1168	0	ENST00000304494.5:c.191dup	p.Leu65AlafsTer55	p.L65Afs*55	ENST00000304494	NM_000077.4	64	ctg/ctTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0018972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	18	1170	1	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	93	804	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56167804	56167804	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	85	519	0	ENST00000399503.3:c.1369del	p.Thr457GlnfsTer30	p.T457Qfs*30	ENST00000399503	NM_005921.1	457	Aca/ca																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181757	56181758	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0019192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	63	392	0	ENST00000399503.3:c.3986dup		p.X1329_splice	ENST00000399503	NM_005921.1	1329																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39644783	39644783	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	49	552	0	ENST00000262039.4:c.2512A>T	p.Thr838Ser	p.T838S	ENST00000262039	NM_002647.2	838	Act/Tct																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095944	178095944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	53	512	0	ENST00000397062.3:c.1387G>T	p.Ala463Ser	p.A463S	ENST00000397062	NM_006164.4	463	Gct/Tct																																																																														
XIAP	331	MSKCC	GRCh37	X	123034457	123034457	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	49	688	0	ENST00000355640.3:c.1214A>C	p.Lys405Thr	p.K405T	ENST00000355640		405	aAa/aCa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115967	8115995	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	TGGTCACCGCCATGGGTTAGAGCCCTGCT	TGGTCACCGCCATGGGTTAGAGCCCTGCT	-			P-0020544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	37	571	0	ENST00000346208.3:c.1313_*9del		p.*438*	ENST00000346208		438																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145737624	145737624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1287050785		P-0020544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	150	1261	1	ENST00000428558.2:c.3139G>A	p.Glu1047Lys	p.E1047K	ENST00000428558	NM_004260.3	1047	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	161	671	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
STK40	83931	MSKCC	GRCh37	1	36814336	36814336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			685	37	714	0	ENST00000373129.3:c.704G>A	p.Gly235Glu	p.G235E	ENST00000373129	NM_032017.1	235	gGg/gAg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56414679	56414679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	76	613	1	ENST00000348428.3:c.2080G>A	p.Gly694Arg	p.G694R	ENST00000348428	NM_006785.3	694	Gga/Aga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222901	5222901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	96	290	0	ENST00000357368.4:c.2902G>T	p.Ala968Ser	p.A968S	ENST00000357368	NM_002850.3	968	Gcc/Tcc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955070	17955070	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1296361489		P-0020613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			832	112	809	2	ENST00000458235.1:c.157C>A	p.Leu53Met	p.L53M	ENST00000458235	NM_000215.3	53	Ctg/Atg																																																																														
TET2	54790	MSKCC	GRCh37	4	106197539	106197540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	115	443	0	ENST00000380013.4:c.5875dup	p.Thr1959AsnfsTer56	p.T1959Nfs*56	ENST00000380013	NM_001127208.2	1958	gaa/gAaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0020646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	33	1023	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	35	797	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0020970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	324	831	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29557272	29557278	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATATAGG	ATATAGG	-			P-0020970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	106	408	0	ENST00000358273.4:c.2991-6_2991del		p.X997_splice	ENST00000358273	NM_001042492.2	997																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244831	41244831	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs876659072		P-0020970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	274	800	0	ENST00000357654.3:c.2717del	p.Lys906ArgfsTer94	p.K906Rfs*94	ENST00000357654	NM_007294.3	906	aAg/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	101	1014	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	458	721	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	95	402	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	127	448	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663299	227663301	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs753296153		P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	183	586	0	ENST00000305123.5:c.154_156del	p.Lys52del	p.K52del	ENST00000305123	NM_005544.2	52	AAG/-																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220064	36220064	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1232763910		P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	57	804	4	ENST00000222270.7:c.4784C>T	p.Ala1595Val	p.A1595V	ENST00000222270	NM_014727.1	1595	gCg/gTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55598132	55598132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	88	547	1	ENST00000288135.5:c.2329G>A	p.Ala777Thr	p.A777T	ENST00000288135	NM_000222.2	777	Gca/Aca																																																																														
KLF4	9314	MSKCC	GRCh37	9	110251222	110251222	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756574707		P-0021147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	44	873	0	ENST00000374672.4:c.115G>A	p.Ala39Thr	p.A39T	ENST00000374672	NM_004235.4	39	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	445	1119	1	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433714	49433715	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAGGGCGTAGTGG			P-0021782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	385	1207	0	ENST00000301067.7:c.7825_7838dup	p.Ser2614HisfsTer82	p.S2614Hfs*82	ENST00000301067	NM_003482.3	2613	ccg/ccCCACTACGCCCTCCg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981793	70981793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1603	1858	1116	0	ENST00000276594.2:c.303G>T	p.Trp101Cys	p.W101C	ENST00000276594	NM_024504.3	101	tgG/tgT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0021787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	145	830	4	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
PARP1	142	MSKCC	GRCh37	1	226555240	226555240	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	32	744	0	ENST00000366794.5:c.2347G>C	p.Asp783His	p.D783H	ENST00000366794	NM_001618.3	783	Gat/Cat																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103506678	103506678	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1279673720		P-0021787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	25	423	0	ENST00000355739.4:c.421A>G	p.Asn141Asp	p.N141D	ENST00000355739	NM_000123.3	141	Aac/Gac																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574790	95574790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	19	486	0	ENST00000343455.3:c.2307C>A	p.Tyr769Ter	p.Y769*	ENST00000343455	NM_177438.2	769	taC/taA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11291067	11291067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	70	666	0	ENST00000361445.4:c.2694G>T	p.Lys898Asn	p.K898N	ENST00000361445	NM_004958.3	898	aaG/aaT																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317000	11317000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	49	411	0	ENST00000361445.4:c.494G>T	p.Arg165Ile	p.R165I	ENST00000361445	NM_004958.3	165	aGa/aTa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256692	16256692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	32	614	0	ENST00000375759.3:c.3957G>T	p.Gln1319His	p.Q1319H	ENST00000375759	NM_015001.2	1319	caG/caT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257959	16257959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	120	616	0	ENST00000375759.3:c.5224T>C	p.Phe1742Leu	p.F1742L	ENST00000375759	NM_015001.2	1742	Ttt/Ctt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260803	16260803	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150899650		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	125	593	1	ENST00000375759.3:c.8068G>A	p.Val2690Met	p.V2690M	ENST00000375759	NM_015001.2	2690	Gtg/Atg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088709	27088709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373690941		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	180	775	2	ENST00000324856.7:c.2318C>T	p.Pro773Leu	p.P773L	ENST00000324856	NM_006015.4	773	cCg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101301	27101301	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746264786		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	138	727	0	ENST00000324856.7:c.4583G>A	p.Arg1528Gln	p.R1528Q	ENST00000324856	NM_006015.4	1528	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	147	609	1	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39317318	39317318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	120	638	1	ENST00000373001.3:c.868G>A	p.Asp290Asn	p.D290N	ENST00000373001	NM_022157.3	290	Gat/Aat																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39322577	39322577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	116	657	0	ENST00000373001.3:c.415G>T	p.Ala139Ser	p.A139S	ENST00000373001	NM_022157.3	139	Gca/Tca																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46714211	46714211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	145	596	0	ENST00000371975.4:c.31G>A	p.Ala11Thr	p.A11T	ENST00000371975	NM_003579.3	11	Gcc/Acc																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439681	51439681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	64	501	0	ENST00000262662.1:c.246C>A	p.Phe82Leu	p.F82L	ENST00000262662		82	ttC/ttA																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444592	78444592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	140	466	2	ENST00000370768.2:c.97G>T	p.Asp33Tyr	p.D33Y	ENST00000370768	NM_003902.3	33	Gat/Tat																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120497768	120497768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781902176		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	59	595	4	ENST00000256646.2:c.2114G>A	p.Arg705His	p.R705H	ENST00000256646	NM_024408.3	705	cGc/cAc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874163	155874163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs977405637		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	207	735	1	ENST00000368323.3:c.368G>A	p.Arg123His	p.R123H	ENST00000368323	NM_006912.5	123	cGt/cAt																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874172	155874172	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753425443		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	190	742	2	ENST00000368323.3:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000368323	NM_006912.5	120	cGa/cAa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729614	162729614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773580613		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	103	598	0	ENST00000367921.3:c.700G>A	p.Asp234Asn	p.D234N	ENST00000367921	NM_006182.2	234	Gat/Aat																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111074	193111074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	86	412	0	ENST00000367435.3:c.607G>T	p.Asp203Tyr	p.D203Y	ENST00000367435	NM_024529.4	203	Gat/Tat																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111167	193111167	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	114	493	0	ENST00000367435.3:c.700C>T	p.Arg234Ter	p.R234*	ENST00000367435	NM_024529.4	234	Cga/Tga																																																																														
MDM4	4194	MSKCC	GRCh37	1	204512023	204512023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	110	518	0	ENST00000367182.3:c.623G>A	p.Ser208Asn	p.S208N	ENST00000367182	NM_001278516.1	208	aGc/aAc																																																																														
PARP1	142	MSKCC	GRCh37	1	226568877	226568877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	113	601	0	ENST00000366794.5:c.1192C>A	p.Leu398Ile	p.L398I	ENST00000366794	NM_001618.3	398	Ctc/Atc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716095	243716095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	156	739	1	ENST00000263826.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000263826	NM_005465.4	367	Cga/Tga																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63662041	63662041	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs371476471		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	190	522	0	ENST00000279873.7:c.145A>G	p.Lys49Glu	p.K49E	ENST00000279873	NM_032199.2	49	Aag/Gag																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63760071	63760071	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751880754		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	126	374	1	ENST00000279873.7:c.724G>A	p.Asp242Asn	p.D242N	ENST00000279873	NM_032199.2	242	Gat/Aat																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63817029	63817029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	116	338	0	ENST00000279873.7:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000279873	NM_032199.2	334	Gaa/Aaa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63817076	63817076	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	23	236	0	ENST00000279873.7:c.1047G>T	p.Gln349His	p.Q349H	ENST00000279873	NM_032199.2	349	caG/caT																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850636	63850636	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	72	372	1	ENST00000279873.7:c.1414G>T	p.Glu472Ter	p.E472*	ENST00000279873	NM_032199.2	472	Gaa/Taa																																																																														
TET1	80312	MSKCC	GRCh37	10	70450596	70450596	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	154	574	0	ENST00000373644.4:c.5440del	p.Ser1814ValfsTer9	p.S1814Vfs*9	ENST00000373644	NM_030625.2	1812	gtA/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720741	89720741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs371387815		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	13	185	1	ENST00000371953.3:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000371953	NM_000314.4	298	Caa/Taa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258033	123258033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	111	744	0	ENST00000358487.5:c.1648C>A	p.Leu550Ile	p.L550I	ENST00000358487	NM_000141.4	550	Ctt/Att																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279681	123279681	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	53	392	1	ENST00000358487.5:c.751C>T	p.Arg251Ter	p.R251*	ENST00000358487	NM_000141.4	251	Cga/Tga																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154880	2154880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761163170		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	158	664	0	ENST00000434045.2:c.341G>A	p.Arg114His	p.R114H	ENST00000434045	NM_001127598.1	114	cGt/cAt																																																																														
WT1	7490	MSKCC	GRCh37	11	32456678	32456678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	97	444	1	ENST00000332351.3:c.214G>A	p.Asp72Asn	p.D72N	ENST00000332351	NM_024426.4	72	Gac/Aac																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132779	64132779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776640922		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	97	616	3	ENST00000334205.4:c.913G>A	p.Asp305Asn	p.D305N	ENST00000334205	NM_003942.2	305	Gat/Aat																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577332	64577332	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1470227348		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	57	712	0	ENST00000337652.1:c.250T>C	p.Ser84Pro	p.S84P	ENST00000337652	NM_130803.2	84	Tct/Cct																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514320	69514320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	52	561	0	ENST00000294312.3:c.361G>C	p.Ala121Pro	p.A121P	ENST00000294312	NM_005117.2	121	Gct/Cct																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047231	77047231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	169	629	1	ENST00000356341.3:c.1313G>A	p.Arg438Gln	p.R438Q	ENST00000356341	NM_002576.4	438	cGa/cAa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94169032	94169032	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1264567817		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	127	595	0	ENST00000323929.3:c.1960G>T	p.Asp654Tyr	p.D654Y	ENST00000323929	NM_005591.3	654	Gac/Tac																																																																														
SESN3	143686	MSKCC	GRCh37	11	94923009	94923009	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	193	780	0	ENST00000536441.1:c.459A>C	p.Lys153Asn	p.K153N	ENST00000536441	NM_144665.3	153	aaA/aaC																																																																														
PGR	5241	MSKCC	GRCh37	11	100962516	100962516	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	135	613	0	ENST00000325455.5:c.1881C>A	p.Cys627Ter	p.C627*	ENST00000325455	NM_001202474.3	627	tgC/tgA																																																																														
PGR	5241	MSKCC	GRCh37	11	100996761	100996761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	49	591	0	ENST00000325455.5:c.1766T>C	p.Val589Ala	p.V589A	ENST00000325455	NM_001202474.3	589	gTc/gCc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998793	100998793	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	53	632	0	ENST00000325455.5:c.1009A>C	p.Ser337Arg	p.S337R	ENST00000325455	NM_001202474.3	337	Agc/Cgc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195344	102195344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1220112786		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	178	564	1	ENST00000263464.3:c.104C>T	p.Thr35Met	p.T35M	ENST00000263464	NM_001165.4	35	aCg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108170554	108170554	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	130	567	2	ENST00000278616.4:c.5119G>T	p.Glu1707Ter	p.E1707*	ENST00000278616	NM_000051.3	1707	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108199820	108199820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	106	420	0	ENST00000278616.4:c.7162C>T	p.Leu2388Phe	p.L2388F	ENST00000278616	NM_000051.3	2388	Ctc/Ttc																																																																														
ATM	472	MSKCC	GRCh37	11	108199875	108199875	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs771994581		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	49	368	0	ENST00000278616.4:c.7217A>G	p.Lys2406Arg	p.K2406R	ENST00000278616	NM_000051.3	2406	aAa/aGa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416777	416777	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs373294922		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	81	388	0	ENST00000399788.2:c.3773A>G	p.Asp1258Gly	p.D1258G	ENST00000399788	NM_001042603.1	1258	gAt/gGt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	427295	427295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	131	629	0	ENST00000399788.2:c.2874G>T	p.Lys958Asn	p.K958N	ENST00000399788	NM_001042603.1	958	aaG/aaT																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435382	18435382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	39	461	0	ENST00000266497.5:c.367G>A	p.Glu123Lys	p.E123K	ENST00000266497		123	Gaa/Aaa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21623997	21623997	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759728105		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	73	322	0	ENST00000421138.2:c.1703C>T	p.Ser568Leu	p.S568L	ENST00000421138		568	tCg/tTg																																																																														
RECQL	5965	MSKCC	GRCh37	12	21624504	21624504	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	214	785	0	ENST00000421138.2:c.1525A>C	p.Lys509Gln	p.K509Q	ENST00000421138		509	Aaa/Caa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21627911	21627911	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs770499904		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	145	700	2	ENST00000421138.2:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000421138		407	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46233157	46233157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	33	437	0	ENST00000334344.6:c.1376C>T	p.Pro459Leu	p.P459L	ENST00000334344	NM_152641.2	459	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416612	49416612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	160	656	0	ENST00000301067.7:c.16099A>G	p.Thr5367Ala	p.T5367A	ENST00000301067	NM_003482.3	5367	Acc/Gcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420778	49420778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1427665021		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	51	647	0	ENST00000301067.7:c.14971C>T	p.Arg4991Trp	p.R4991W	ENST00000301067	NM_003482.3	4991	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495747	56495747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	134	570	0	ENST00000267101.3:c.3937C>A	p.Leu1313Ile	p.L1313I	ENST00000267101	NM_001982.3	1313	Cta/Ata																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864187	57864187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	65	617	0	ENST00000228682.2:c.1664T>C	p.Val555Ala	p.V555A	ENST00000228682	NM_005269.2	555	gTc/gCc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864193	57864193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746398371		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	128	614	2	ENST00000228682.2:c.1670G>A	p.Arg557His	p.R557H	ENST00000228682	NM_005269.2	557	cGc/cAc																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233378	69233378	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	96	484	0	ENST00000462284.1:c.1243G>T	p.Glu415Ter	p.E415*	ENST00000462284	NM_002392.5	415	Gaa/Taa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112892416	112892416	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1488672907		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	73	657	1	ENST00000351677.2:c.574G>T	p.Asp192Tyr	p.D192Y	ENST00000351677	NM_002834.3	192	Gat/Tat																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112508	115112508	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755311630		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	32	634	0	ENST00000257566.3:c.1232C>T	p.Ala411Val	p.A411V	ENST00000257566	NM_016569.3	411	gCg/gTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117311	115117311	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	128	512	0	ENST00000257566.3:c.863A>C	p.Lys288Thr	p.K288T	ENST00000257566	NM_016569.3	288	aAg/aCg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800928	120800928	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1337094477		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	148	601	2	ENST00000257552.2:c.320G>A	p.Arg107Gln	p.R107Q	ENST00000257552	NM_002442.3	107	cGa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133208920	133208920	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	48	607	0	ENST00000320574.5:c.6311T>G	p.Phe2104Cys	p.F2104C	ENST00000320574	NM_006231.2	2104	tTc/tGc																																																																														
POLE	5426	MSKCC	GRCh37	12	133210831	133210831	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	68	914	0	ENST00000320574.5:c.5945T>G	p.Ile1982Ser	p.I1982S	ENST00000320574	NM_006231.2	1982	aTt/aGt																																																																														
POLE	5426	MSKCC	GRCh37	12	133214650	133214650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	138	579	0	ENST00000320574.5:c.5628G>T	p.Lys1876Asn	p.K1876N	ENST00000320574	NM_006231.2	1876	aaG/aaT																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	86	532	1	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623524	28623524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371030554		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	89	499	0	ENST00000241453.7:c.1033G>A	p.Val345Ile	p.V345I	ENST00000241453	NM_004119.2	345	Gta/Ata																																																																														
BRCA2	675	MSKCC	GRCh37	13	32899248	32899248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375125172		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	74	478	1	ENST00000380152.3:c.352C>T	p.Arg118Cys	p.R118C	ENST00000380152		118	Cgc/Tgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32900639	32900639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41293469		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	117	484	1	ENST00000380152.3:c.520C>T	p.Arg174Cys	p.R174C	ENST00000380152		174	Cgt/Tgt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911500	32911500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	153	571	0	ENST00000380152.3:c.3008A>G	p.His1003Arg	p.H1003R	ENST00000380152		1003	cAc/cGc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912546	32912546	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs80358655		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	215	671	0	ENST00000380152.3:c.4054G>T	p.Asp1352Tyr	p.D1352Y	ENST00000380152		1352	Gat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914232	32914232	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	78	642	0	ENST00000380152.3:c.5740A>G	p.Ser1914Gly	p.S1914G	ENST00000380152		1914	Agc/Ggc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32920978	32920978	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs80358920		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	76	575	2	ENST00000380152.3:c.6952C>T	p.Arg2318Ter	p.R2318*	ENST00000380152		2318	Cga/Tga																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335535	73335535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	219	624	0	ENST00000377767.4:c.2636A>G	p.Asp879Gly	p.D879G	ENST00000377767	NM_014953.3	879	gAc/gGc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515335	103515335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	103	428	0	ENST00000355739.4:c.1836G>T	p.Glu612Asp	p.E612D	ENST00000355739	NM_000123.3	612	gaG/gaT																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066828	30066828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	119	683	1	ENST00000331968.5:c.2303C>A	p.Ser768Tyr	p.S768Y	ENST00000331968	NM_002742.2	768	tCt/tAt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135304	30135304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	125	642	0	ENST00000331968.5:c.514C>T	p.Arg172Cys	p.R172C	ENST00000331968	NM_002742.2	172	Cgt/Tgt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135325	30135325	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	143	659	0	ENST00000331968.5:c.493G>T	p.Glu165Ter	p.E165*	ENST00000331968	NM_002742.2	165	Gaa/Taa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582984	95582984	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	106	462	0	ENST00000343455.3:c.1558A>C	p.Ser520Arg	p.S520R	ENST00000343455	NM_177438.2	520	Agt/Cgt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590756	95590756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746886465		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	119	532	0	ENST00000343455.3:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000343455	NM_177438.2	385	Cgc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	42005631	42005631	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	45	482	0	ENST00000219905.7:c.3367G>T	p.Glu1123Ter	p.E1123*	ENST00000219905	NM_001164273.1	1123	Gaa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	42042302	42042302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	65	664	0	ENST00000219905.7:c.6497C>A	p.Ser2166Tyr	p.S2166Y	ENST00000219905	NM_001164273.1	2166	tCt/tAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707804	43707804	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	85	782	0	ENST00000382044.4:c.5077A>C	p.Thr1693Pro	p.T1693P	ENST00000382044	NM_001141980.1	1693	Aca/Cca																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714141	43714141	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	183	801	0	ENST00000382044.4:c.4012G>T	p.Gly1338Ter	p.G1338*	ENST00000382044	NM_001141980.1	1338	Gga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43784525	43784525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1048972918		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	174	722	1	ENST00000382044.4:c.149G>A	p.Arg50Gln	p.R50Q	ENST00000382044	NM_001141980.1	50	cGa/cAa																																																																														
B2M	567	MSKCC	GRCh37	15	45007642	45007642	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	115	388	0	ENST00000558401.1:c.89A>G	p.Tyr30Cys	p.Y30C	ENST00000558401	NM_004048.2	30	tAc/tGc																																																																														
B2M	567	MSKCC	GRCh37	15	45007791	45007791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	112	595	0	ENST00000558401.1:c.238T>C	p.Trp80Arg	p.W80R	ENST00000558401	NM_004048.2	80	Tgg/Cgg																																																																														
B2M	567	MSKCC	GRCh37	15	45007876	45007876	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	156	544	0	ENST00000558401.1:c.323C>A	p.Ser108Ter	p.S108*	ENST00000558401	NM_004048.2	108	tCa/tAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669589	88669589	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	109	448	0	ENST00000360948.2:c.1309G>T	p.Gly437Ter	p.G437*	ENST00000360948	NM_001012338.2	437	Gga/Tga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679272	88679272	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	43	648	0	ENST00000360948.2:c.766-1G>A		p.X256_splice	ENST00000360948	NM_001012338.2	256																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88799180	88799180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	123	740	0	ENST00000360948.2:c.205G>A	p.Ala69Thr	p.A69T	ENST00000360948	NM_001012338.2	69	Gcc/Acc																																																																														
BLM	641	MSKCC	GRCh37	15	91290717	91290717	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	98	424	0	ENST00000355112.3:c.95T>G	p.Phe32Cys	p.F32C	ENST00000355112	NM_000057.2	32	tTt/tGt																																																																														
BLM	641	MSKCC	GRCh37	15	91303958	91303958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	87	704	1	ENST00000355112.3:c.1355A>G	p.Glu452Gly	p.E452G	ENST00000355112	NM_000057.2	452	gAg/gGg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396626	396626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143341222		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	145	634	0	ENST00000262320.3:c.400G>A	p.Glu134Lys	p.E134K	ENST00000262320	NM_003502.3	134	Gag/Aag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126107	2126107	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs796053491		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	178	775	0	ENST00000219476.3:c.2678T>C	p.Ile893Thr	p.I893T	ENST00000219476	NM_000548.3	893	aTa/aCa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136735	2136735	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs377129517		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	143	825	0	ENST00000219476.3:c.4852G>A	p.Val1618Ile	p.V1618I	ENST00000219476	NM_000548.3	1618	Gtc/Atc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3644516	3644516	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1367749586		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	163	796	1	ENST00000294008.3:c.2098G>A	p.Gly700Arg	p.G700R	ENST00000294008	NM_032444.2	700	Ggg/Agg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857706	9857706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	84	485	0	ENST00000330684.3:c.3695C>T	p.Ser1232Phe	p.S1232F	ENST00000330684	NM_001134407.1	1232	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916198	9916198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	51	631	1	ENST00000330684.3:c.2091C>A	p.Asn697Lys	p.N697K	ENST00000330684	NM_001134407.1	697	aaC/aaA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916260	9916260	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	35	504	0	ENST00000330684.3:c.2029T>G	p.Ser677Ala	p.S677A	ENST00000330684	NM_001134407.1	677	Tcc/Gcc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14022054	14022054	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	148	587	0	ENST00000311895.7:c.754T>G	p.Leu252Val	p.L252V	ENST00000311895	NM_005236.2	252	Tta/Gta																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029183	14029183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	95	373	0	ENST00000311895.7:c.1394C>T	p.Ser465Phe	p.S465F	ENST00000311895	NM_005236.2	465	tCt/tTt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645297	67645297	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	119	559	2	ENST00000264010.4:c.562G>T	p.Asp188Tyr	p.D188Y	ENST00000264010	NM_006565.3	188	Gat/Tat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993212	72993212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	223	834	0	ENST00000268489.5:c.833G>T	p.Arg278Met	p.R278M	ENST00000268489	NM_006885.3	278	aGg/aTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81939108	81939108	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	81	475	0	ENST00000359376.3:c.1463A>C	p.Asp488Ala	p.D488A	ENST00000359376	NM_002661.3	488	gAc/gCc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81990399	81990399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199530350		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	186	715	0	ENST00000359376.3:c.3670C>T	p.Arg1224Cys	p.R1224C	ENST00000359376	NM_002661.3	1224	Cgc/Tgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349604	89349604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs924589358		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	199	907	1	ENST00000301030.4:c.3346G>A	p.Ala1116Thr	p.A1116T	ENST00000301030	NM_001256183.1	1116	Gca/Aca																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350407	89350407	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	200	881	0	ENST00000301030.4:c.2543C>A	p.Ser848Ter	p.S848*	ENST00000301030	NM_001256183.1	848	tCa/tAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350882	89350882	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751750670		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	257	1072	1	ENST00000301030.4:c.2068G>A	p.Asp690Asn	p.D690N	ENST00000301030	NM_001256183.1	690	Gat/Aat																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216782	7216782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1324992597		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	99	549	1	ENST00000380728.2:c.641C>T	p.Ser214Leu	p.S214L	ENST00000380728		214	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	132	744	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16056687	16056687	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs767188997		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	156	605	2	ENST00000268712.3:c.755A>C	p.Lys252Thr	p.K252T	ENST00000268712	NM_006311.3	252	aAa/aCa																																																																														
NF1	4763	MSKCC	GRCh37	17	29528158	29528158	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs149739570		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	152	799	0	ENST00000358273.4:c.1166A>G	p.His389Arg	p.H389R	ENST00000358273	NM_001042492.2	389	cAc/cGc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627509	37627509	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs371684674		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	145	609	2	ENST00000447079.4:c.1424C>A	p.Ser475Tyr	p.S475Y	ENST00000447079	NM_015083.1	475	tCt/tAt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37680983	37680983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	144	571	0	ENST00000447079.4:c.3152G>A	p.Arg1051Gln	p.R1051Q	ENST00000447079	NM_015083.1	1051	cGa/cAa																																																																														
RARA	5914	MSKCC	GRCh37	17	38504619	38504619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1240210247		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	102	773	1	ENST00000254066.5:c.230C>T	p.Ser77Leu	p.S77L	ENST00000254066	NM_000964.3	77	tCg/tTg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40857132	40857132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1316478374		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	145	632	0	ENST00000428826.2:c.1909G>A	p.Glu637Lys	p.E637K	ENST00000428826		637	Gaa/Aaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244866	41244866	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	156	693	0	ENST00000357654.3:c.2682A>C	p.Lys894Asn	p.K894N	ENST00000357654	NM_007294.3	894	aaA/aaC																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246409	41246409	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs876659193		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	144	810	0	ENST00000357654.3:c.1139A>C	p.Gln380Pro	p.Q380P	ENST00000357654	NM_007294.3	380	cAg/cCg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699412	47699412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	85	446	0	ENST00000347630.2:c.96C>A	p.Phe32Leu	p.F32L	ENST00000347630	NM_001007230.1	32	ttC/ttA																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58677945	58677945	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770413280		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	43	320	1	ENST00000305921.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000305921	NM_003620.3	57	gCc/gTc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761219	59761219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs575998972		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	189	846	0	ENST00000259008.2:c.3188C>T	p.Ser1063Leu	p.S1063L	ENST00000259008	NM_032043.2	1063	tCg/tTg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761357	59761357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747907706		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	134	703	1	ENST00000259008.2:c.3050C>T	p.Pro1017Leu	p.P1017L	ENST00000259008	NM_032043.2	1017	cCg/cTg																																																																														
CD79B	974	MSKCC	GRCh37	17	62007506	62007506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	135	732	0	ENST00000392795.3:c.361T>C	p.Tyr121His	p.Y121H	ENST00000392795	NM_001039933.1	121	Tac/Cac																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372094	45372094	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	136	743	0	ENST00000262160.6:c.1075A>G	p.Ser359Gly	p.S359G	ENST00000262160	NM_005901.5	359	Agc/Ggc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45377685	45377685	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	76	427	0	ENST00000262160.6:c.744A>C	p.Glu248Asp	p.E248D	ENST00000262160	NM_005901.5	248	gaA/gaC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	131	559	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																														
STK11	6794	MSKCC	GRCh37	19	1226642	1226642	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	68	473	0	ENST00000326873.7:c.1298A>G	p.Gln433Arg	p.Q433R	ENST00000326873	NM_000455.4	433	cAg/cGg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211143	2211143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	60	807	1	ENST00000398665.3:c.1397G>A	p.Ser466Asn	p.S466N	ENST00000398665	NM_032482.2	466	aGc/aAc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117529	4117529	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1135401787		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	58	248	0	ENST00000262948.5:c.191T>C	p.Val64Ala	p.V64A	ENST00000262948	NM_030662.3	64	gTc/gCc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214663	5214663	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	32	792	0	ENST00000357368.4:c.4403T>C	p.Leu1468Pro	p.L1468P	ENST00000357368	NM_002850.3	1468	cTg/cCg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220080	5220080	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375875548		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	100	669	2	ENST00000357368.4:c.3635G>A	p.Arg1212His	p.R1212H	ENST00000357368	NM_002850.3	1212	cGc/cAc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10267124	10267124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751093624		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	155	696	1	ENST00000340748.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000340748		432	Gaa/Aaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11106922	11106922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	174	746	0	ENST00000344626.4:c.1627G>A	p.Asp543Asn	p.D543N	ENST00000344626	NM_003072.3	543	Gac/Aac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144518	11144518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765989895		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	154	577	1	ENST00000344626.4:c.3850G>A	p.Asp1284Asn	p.D1284N	ENST00000344626	NM_003072.3	1284	Gac/Aac																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954299	17954299	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	86	576	0	ENST00000458235.1:c.310T>G	p.Phe104Val	p.F104V	ENST00000458235	NM_000215.3	104	Ttt/Gtt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273041	18273041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	166	773	1	ENST00000222254.8:c.931C>T	p.Pro311Ser	p.P311S	ENST00000222254	NM_005027.3	311	Ccg/Tcg																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313208	30313208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	132	779	1	ENST00000262643.3:c.902C>A	p.Ala301Asp	p.A301D	ENST00000262643	NM_001238.2	301	gCt/gAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218664	36218664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	133	774	0	ENST00000222270.7:c.4368C>A	p.Phe1456Leu	p.F1456L	ENST00000222270	NM_014727.1	1456	ttC/ttA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229346	36229346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1452431678		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	159	591	3	ENST00000222270.7:c.8036G>A	p.Arg2679His	p.R2679H	ENST00000222270	NM_014727.1	2679	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229444	36229444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	66	530	0	ENST00000222270.7:c.8134C>T	p.Arg2712Trp	p.R2712W	ENST00000222270	NM_014727.1	2712	Cgg/Tgg																																																																														
AXL	558	MSKCC	GRCh37	19	41763489	41763489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201238916		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	116	594	0	ENST00000301178.4:c.2288G>A	p.Arg763His	p.R763H	ENST00000301178	NM_021913.4	763	cGc/cAc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383653	42383653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	108	662	0	ENST00000221972.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000221972	NM_021601.3	143	cGa/cAa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753836	42753836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1250639908		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	87	904	2	ENST00000222329.4:c.428G>A	p.Arg143His	p.R143H	ENST00000222329	NM_006494.2	143	cGc/cAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42793222	42793222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	145	735	0	ENST00000575354.2:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000575354	NM_015125.3	372	Gcg/Acg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797894	42797894	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1314616216		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	49	718	3	ENST00000575354.2:c.3946G>T	p.Gly1316Trp	p.G1316W	ENST00000575354	NM_015125.3	1316	Ggg/Tgg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860760	45860760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146632315		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	57	745	2	ENST00000391945.4:c.1349G>A	p.Arg450His	p.R450H	ENST00000391945	NM_000400.3	450	cGt/cAt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868194	45868194	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1032384332		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	62	752	1	ENST00000391945.4:c.496C>T	p.Arg166Cys	p.R166C	ENST00000391945	NM_000400.3	166	Cgt/Tgt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716301	52716301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	104	645	1	ENST00000322088.6:c.745C>T	p.Arg249Cys	p.R249C	ENST00000322088	NM_014225.5	249	Cgc/Tgc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085680	16085680	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776847158		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	79	742	0	ENST00000281043.3:c.856C>T	p.Arg286Cys	p.R286C	ENST00000281043	NM_005378.4	286	Cgt/Tgt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086001	16086001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	170	604	0	ENST00000281043.3:c.1177C>T	p.Arg393Cys	p.R393C	ENST00000281043	NM_005378.4	393	Cgc/Tgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25498386	25498386	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1274769751		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	118	575	0	ENST00000264709.3:c.475G>A	p.Glu159Lys	p.E159K	ENST00000264709	NM_175629.2	159	Gaa/Aaa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523076	25523076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	137	680	0	ENST00000264709.3:c.109G>A	p.Glu37Lys	p.E37K	ENST00000264709	NM_175629.2	37	Gag/Aag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1271466699		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	115	645	2	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967231	25967231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	114	539	0	ENST00000435504.4:c.1975G>T	p.Asp659Tyr	p.D659Y	ENST00000435504		659	Gac/Tac																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	89	311	0	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068387	26068387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	57	605	0	ENST00000435504.4:c.103C>A	p.Leu35Ile	p.L35I	ENST00000435504		35	Ctt/Att																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26101038	26101038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	126	630	0	ENST00000435504.4:c.54G>T	p.Lys18Asn	p.K18N	ENST00000435504		18	aaG/aaT																																																																														
ALK	238	MSKCC	GRCh37	2	29456525	29456525	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	52	843	0	ENST00000389048.3:c.2393A>G	p.Asn798Ser	p.N798S	ENST00000389048	NM_004304.4	798	aAc/aGc																																																																														
ALK	238	MSKCC	GRCh37	2	30143132	30143132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1262491330		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	80	720	0	ENST00000389048.3:c.394G>A	p.Val132Met	p.V132M	ENST00000389048	NM_004304.4	132	Gtg/Atg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39240688	39240688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	65	651	0	ENST00000402219.2:c.2080C>T	p.Arg694Trp	p.R694W	ENST00000402219	NM_005633.3	694	Cgg/Tgg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656970	47656970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757276241		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	145	496	0	ENST00000233146.2:c.1166G>A	p.Arg389Gln	p.R389Q	ENST00000233146	NM_000251.2	389	cGa/cAa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs63751411		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	94	520	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703539	47703539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1203462814		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	129	694	1	ENST00000233146.2:c.2039G>A	p.Arg680Gln	p.R680Q	ENST00000233146	NM_000251.2	680	cGa/cAa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47709930	47709930	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	70	505	0	ENST00000233146.2:c.2647A>C	p.Ile883Leu	p.I883L	ENST00000233146	NM_000251.2	883	Att/Ctt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47710035	47710035	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	94	446	0	ENST00000233146.2:c.2752A>C	p.Lys918Gln	p.K918Q	ENST00000233146	NM_000251.2	918	Aag/Cag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026616	48026616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	109	531	0	ENST00000234420.5:c.1494G>T	p.Lys498Asn	p.K498N	ENST00000234420	NM_000179.2	498	aaG/aaT																																																																														
REL	5966	MSKCC	GRCh37	2	61149342	61149342	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	111	486	0	ENST00000295025.8:c.1532A>G	p.Asn511Ser	p.N511S	ENST00000295025	NM_002908.2	511	aAt/aGt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266136	198266136	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	131	512	0	ENST00000335508.6:c.2484A>C	p.Arg828Ser	p.R828S	ENST00000335508	NM_012433.2	828	agA/agC																																																																														
CASP8	841	MSKCC	GRCh37	2	202141632	202141632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764461240		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	130	578	0	ENST00000358485.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000358485	NM_001080125.1	307	cGg/cAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251876	212251876	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	41	312	0	ENST00000342788.4:c.3184-1G>T		p.X1062_splice	ENST00000342788	NM_005235.2	1062																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285182	212285182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	110	565	0	ENST00000342788.4:c.3119G>T	p.Arg1040Ile	p.R1040I	ENST00000342788	NM_005235.2	1040	aGa/aTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495220	212495220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	189	654	0	ENST00000342788.4:c.2046G>T	p.Lys682Asn	p.K682N	ENST00000342788	NM_005235.2	682	aaG/aaT																																																																														
CUL3	8452	MSKCC	GRCh37	2	225343000	225343000	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371342121		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	227	888	2	ENST00000264414.4:c.2092G>A	p.Asp698Asn	p.D698N	ENST00000264414	NM_003590.4	698	Gac/Aac																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422393	225422393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1417750087		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	169	642	0	ENST00000264414.4:c.247G>A	p.Glu83Lys	p.E83K	ENST00000264414	NM_003590.4	83	Gaa/Aaa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662061	227662061	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1466090544		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	112	674	0	ENST00000305123.5:c.1394A>G	p.Tyr465Cys	p.Y465C	ENST00000305123	NM_005544.2	465	tAt/tGt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662637	227662637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755496379		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	131	620	0	ENST00000305123.5:c.818C>T	p.Ser273Leu	p.S273L	ENST00000305123	NM_005544.2	273	tCg/tTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9523271	9523271	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775109543		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	78	621	1	ENST00000353224.5:c.1966C>T	p.Arg656Trp	p.R656W	ENST00000353224	NM_177990.2	656	Cgg/Tgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9538366	9538366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	95	497	0	ENST00000353224.5:c.1632G>T	p.Gln544His	p.Q544H	ENST00000353224	NM_177990.2	544	caG/caT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31015953	31015953	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745960978		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	53	494	1	ENST00000375687.4:c.275G>A	p.Arg92His	p.R92H	ENST00000375687	NM_015338.5	92	cGc/cAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024947	31024947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	153	637	1	ENST00000375687.4:c.4432G>A	p.Ala1478Thr	p.A1478T	ENST00000375687	NM_015338.5	1478	Gca/Aca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710547	40710547	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	149	707	0	ENST00000373198.4:c.4304A>G	p.Asn1435Ser	p.N1435S	ENST00000373198	NM_133170.3	1435	aAc/aGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763964405		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	66	589	1	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827900	40827900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	131	698	0	ENST00000373198.4:c.2528C>A	p.Ser843Tyr	p.S843Y	ENST00000373198	NM_133170.3	843	tCt/tAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40911144	40911144	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776134993		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	115	603	1	ENST00000373198.4:c.2161C>T	p.Arg721Cys	p.R721C	ENST00000373198	NM_133170.3	721	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944424	40944424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	115	763	0	ENST00000373198.4:c.2078C>A	p.Pro693His	p.P693H	ENST00000373198	NM_133170.3	693	cCt/cAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076862	41076862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs750249800		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	76	559	2	ENST00000373198.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000373198	NM_133170.3	520	Gag/Aag																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268443	46268443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	70	520	0	ENST00000371998.3:c.2830G>T	p.Asp944Tyr	p.D944Y	ENST00000371998		944	Gat/Tat																																																																														
ERG	2078	MSKCC	GRCh37	21	39775499	39775499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	157	764	2	ENST00000288319.7:c.521A>G	p.Asp174Gly	p.D174G	ENST00000288319	NM_182918.3	174	gAc/gGc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42842584	42842584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147233451		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	73	725	2	ENST00000398585.3:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000398585	NM_001135099.1	425	Gag/Aag																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29095890	29095890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	57	720	0	ENST00000328354.6:c.944G>A	p.Gly315Glu	p.G315E	ENST00000328354	NM_007194.3	315	gGg/gAg																																																																														
RAC2	5880	MSKCC	GRCh37	22	37628873	37628873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	138	698	1	ENST00000249071.6:c.193G>A	p.Asp65Asn	p.D65N	ENST00000249071	NM_002872.4	65	Gac/Aac																																																																														
EP300	2033	MSKCC	GRCh37	22	41546153	41546153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	71	456	0	ENST00000263253.7:c.2768C>A	p.Ser923Tyr	p.S923Y	ENST00000263253	NM_001429.3	923	tCt/tAt																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	90	362	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266655	41266655	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200968230		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	157	581	1	ENST00000349496.5:c.452G>A	p.Arg151His	p.R151H	ENST00000349496	NM_001904.3	151	cGt/cAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47058692	47058692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	146	728	0	ENST00000409792.3:c.7586A>G	p.Asp2529Gly	p.D2529G	ENST00000409792	NM_014159.6	2529	gAc/gGc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162080	47162080	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	26	505	0	ENST00000409792.3:c.4046T>G	p.Phe1349Cys	p.F1349C	ENST00000409792	NM_014159.6	1349	tTt/tGt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637738	52637738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	105	611	0	ENST00000394830.3:c.2578G>T	p.Glu860Ter	p.E860*	ENST00000394830	NM_018313.4	860	Gaa/Taa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026810	71026810	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	116	473	0	ENST00000318789.4:c.1412C>A	p.Ala471Glu	p.A471E	ENST00000318789	NM_032682.5	471	gCa/gAa																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665096	138665096	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758370933		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	56	308	0	ENST00000330315.3:c.469C>T	p.Pro157Ser	p.P157S	ENST00000330315	NM_023067.3	157	Ccc/Tcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	186	776	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917555	178917555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	160	603	0	ENST00000263967.3:c.430C>A	p.Leu144Met	p.L144M	ENST00000263967	NM_006218.2	144	Ctg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921533	178921533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	108	520	0	ENST00000263967.3:c.1015C>T	p.Leu339Phe	p.L339F	ENST00000263967	NM_006218.2	339	Ctt/Ttt																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665375	182665375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	103	508	0	ENST00000292782.4:c.566G>A	p.Arg189Lys	p.R189K	ENST00000292782	NM_020640.2	189	aGa/aAa																																																																														
BCL6	604	MSKCC	GRCh37	3	187440346	187440346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	86	640	0	ENST00000232014.4:c.2021G>A	p.Arg674Gln	p.R674Q	ENST00000232014	NM_001130845.1	674	cGa/cAa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902755	1902755	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	81	783	0	ENST00000382895.3:c.374A>C	p.Lys125Thr	p.K125T	ENST00000382895	NM_133330.2	125	aAg/aCg																																																																														
KIT	3815	MSKCC	GRCh37	4	55561767	55561767	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780349712		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	105	511	1	ENST00000288135.5:c.157G>A	p.Glu53Lys	p.E53K	ENST00000288135	NM_000222.2	53	Gag/Aag																																																																														
KIT	3815	MSKCC	GRCh37	4	55589752	55589752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	90	422	0	ENST00000288135.5:c.1234A>C	p.Lys412Gln	p.K412Q	ENST00000288135	NM_000222.2	412	Aaa/Caa																																																																														
KIT	3815	MSKCC	GRCh37	4	55599320	55599320	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913506		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	139	643	0	ENST00000288135.5:c.2446G>T	p.Asp816Tyr	p.D816Y	ENST00000288135	NM_000222.2	816	Gac/Tac																																																																														
KDR	3791	MSKCC	GRCh37	4	55955616	55955616	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	93	611	0	ENST00000263923.4:c.3329A>C	p.Lys1110Thr	p.K1110T	ENST00000263923	NM_002253.2	1110	aAg/aCg																																																																														
KDR	3791	MSKCC	GRCh37	4	55972940	55972940	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	160	810	0	ENST00000263923.4:c.1450G>T	p.Glu484Ter	p.E484*	ENST00000263923	NM_002253.2	484	Gaa/Taa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270111	66270111	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs539707153		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	136	517	1	ENST00000273854.3:c.1771G>A	p.Gly591Ser	p.G591S	ENST00000273854	NM_004439.5	591	Ggc/Agc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467874	66467874	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	124	498	0	ENST00000273854.3:c.395T>G	p.Phe132Cys	p.F132C	ENST00000273854	NM_004439.5	132	tTt/tGt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535365	66535365	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	144	704	0	ENST00000273854.3:c.96C>A	p.Tyr32Ter	p.Y32*	ENST00000273854	NM_004439.5	32	taC/taA																																																																														
TET2	54790	MSKCC	GRCh37	4	106157311	106157311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	143	611	2	ENST00000380013.4:c.2212C>A	p.Leu738Ile	p.L738I	ENST00000380013	NM_001127208.2	738	Ctc/Atc																																																																														
TET2	54790	MSKCC	GRCh37	4	106193749	106193749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs552345702		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	29	329	0	ENST00000380013.4:c.4211G>A	p.Arg1404Gln	p.R1404Q	ENST00000380013	NM_001127208.2	1404	cGa/cAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106197030	106197030	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs572196470		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	72	393	0	ENST00000380013.4:c.5363A>G	p.Asp1788Gly	p.D1788G	ENST00000380013	NM_001127208.2	1788	gAc/gGc																																																																														
TET2	54790	MSKCC	GRCh37	4	106197563	106197563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745668941		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	135	487	0	ENST00000380013.4:c.5896C>T	p.Arg1966Cys	p.R1966C	ENST00000380013	NM_001127208.2	1966	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	173	716	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518086	187518086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200185840		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	158	663	2	ENST00000441802.2:c.12608G>A	p.Arg4203His	p.R4203H	ENST00000441802	NM_005245.3	4203	cGt/cAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542509	187542509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	71	655	0	ENST00000441802.2:c.5231G>T	p.Gly1744Val	p.G1744V	ENST00000441802	NM_005245.3	1744	gGt/gTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549409	187549409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs562017880		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	217	732	0	ENST00000441802.2:c.4709G>A	p.Arg1570Gln	p.R1570Q	ENST00000441802	NM_005245.3	1570	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629661	187629661	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	105	658	1	ENST00000441802.2:c.1321A>C	p.Ser441Arg	p.S441R	ENST00000441802	NM_005245.3	441	Agt/Cgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630967	187630967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	86	612	0	ENST00000441802.2:c.15G>T	p.Leu5Phe	p.L5F	ENST00000441802	NM_005245.3	5	ttG/ttT																																																																														
TERT	7015	MSKCC	GRCh37	5	1294255	1294255	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1174718400		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	124	686	0	ENST00000310581.5:c.746C>T	p.Thr249Met	p.T249M	ENST00000310581	NM_198253.2	249	aCg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1294532	1294532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1360708027		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	97	642	1	ENST00000310581.5:c.469G>A	p.Ala157Thr	p.A157T	ENST00000310581	NM_198253.2	157	Gcg/Acg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515239	31515239	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1478716580		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	136	861	0	ENST00000344624.3:c.1146G>T	p.Lys382Asn	p.K382N	ENST00000344624		382	aaG/aaT																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950669	38950669	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	95	539	0	ENST00000357387.3:c.3281T>C	p.Val1094Ala	p.V1094A	ENST00000357387	NM_152756.3	1094	gTg/gCg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38963141	38963141	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs749429040		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	81	281	0	ENST00000357387.3:c.1403G>A	p.Arg468Gln	p.R468Q	ENST00000357387	NM_152756.3	468	cGa/cAa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38982073	38982073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	136	627	0	ENST00000357387.3:c.649G>A	p.Asp217Asn	p.D217N	ENST00000357387	NM_152756.3	217	Gat/Aat																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56170985	56170985	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	105	387	0	ENST00000399503.3:c.1813A>C	p.Asn605His	p.N605H	ENST00000399503	NM_005921.1	605	Aat/Cat																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751565	57751565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	134	403	0	ENST00000274289.3:c.1426G>A	p.Ala476Thr	p.A476T	ENST00000274289	NM_006622.3	476	Gca/Aca																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	129	440	2	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627297	86627297	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	123	486	0	ENST00000274376.6:c.672G>T	p.Met224Ile	p.M224I	ENST00000274376	NM_002890.2	224	atG/atT																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672759	86672759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	134	484	1	ENST00000274376.6:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000274376	NM_002890.2	749	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112116503	112116503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	38	409	0	ENST00000257430.4:c.548A>G	p.Asp183Gly	p.D183G	ENST00000257430	NM_000038.5	183	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	111	508	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	126	456	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175814	112175814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	40	353	0	ENST00000257430.4:c.4523C>A	p.Ala1508Asp	p.A1508D	ENST00000257430	NM_000038.5	1508	gCt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112179524	112179524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587779809		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	107	479	1	ENST00000257430.4:c.8233C>T	p.Pro2745Ser	p.P2745S	ENST00000257430	NM_000038.5	2745	Cct/Tct																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460545	149460545	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	140	725	0	ENST00000286301.3:c.92T>C	p.Val31Ala	p.V31A	ENST00000286301	NM_005211.3	31	gTc/gCc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562906	176562906	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	85	697	0	ENST00000439151.2:c.802G>T	p.Glu268Ter	p.E268*	ENST00000439151	NM_022455.4	268	Gaa/Taa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637607	176637607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	119	693	0	ENST00000439151.2:c.2207C>A	p.Ser736Tyr	p.S736Y	ENST00000439151	NM_022455.4	736	tCt/tAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046722	180046722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768562688		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	126	799	1	ENST00000261937.6:c.2590G>A	p.Ala864Thr	p.A864T	ENST00000261937	NM_182925.4	864	Gct/Act																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056376	180056376	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	92	748	0	ENST00000261937.6:c.868G>T	p.Glu290Ter	p.E290*	ENST00000261937	NM_182925.4	290	Gaa/Taa																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27777880	27777880	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	95	438	0	ENST00000369163.2:c.29A>C	p.Lys10Thr	p.K10T	ENST00000369163	NM_003536.2	10	aAg/aCg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673706	30673706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	172	694	0	ENST00000376406.3:c.3254G>A	p.Gly1085Glu	p.G1085E	ENST00000376406	NM_014641.2	1085	gGg/gAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188007	32188007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1227961128		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	121	865	0	ENST00000375023.3:c.1214C>T	p.Ala405Val	p.A405V	ENST00000375023	NM_004557.3	405	gCc/gTc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803500	32803500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs550712305		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	175	764	0	ENST00000374899.4:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000374899	NM_018833.2	220	cGa/cAa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547352	106547352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	59	591	0	ENST00000369096.4:c.589C>A	p.Leu197Ile	p.L197I	ENST00000369096	NM_001198.3	197	Ctt/Att																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553668	106553668	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1261004652		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	137	459	0	ENST00000369096.4:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000369096	NM_001198.3	545	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642495	117642495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs9489124		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	191	741	1	ENST00000368508.3:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000368508	NM_002944.2	1902	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663679	117663679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	51	534	0	ENST00000368508.3:c.4553A>G	p.Glu1518Gly	p.E1518G	ENST00000368508	NM_002944.2	1518	gAa/gGa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704541	117704541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	23	588	0	ENST00000368508.3:c.2435C>T	p.Thr812Ile	p.T812I	ENST00000368508	NM_002944.2	812	aCc/aTc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023160	150023160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	145	698	1	ENST00000253339.5:c.103C>T	p.Arg35Trp	p.R35W	ENST00000253339		35	Cgg/Tgg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528673	157528673	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1226524520		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	90	652	0	ENST00000346085.5:c.6398C>T	p.Ala2133Val	p.A2133V	ENST00000346085	NM_020732.3	2133	gCg/gTg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729313	41729313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	133	555	0	ENST00000242208.4:c.1216G>A	p.Asp406Asn	p.D406N	ENST00000242208	NM_002192.2	406	Gat/Aat																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459493	50459493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	102	479	0	ENST00000331340.3:c.782C>A	p.Ser261Tyr	p.S261Y	ENST00000331340	NM_006060.4	261	tCt/tAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs121913418		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	33	470	2	ENST00000275493.2:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000275493	NM_005228.3	761	Gat/Aat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508472	106508472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	42	236	1	ENST00000359195.3:c.466G>A	p.Ala156Thr	p.A156T	ENST00000359195	NM_002649.2	156	Gcg/Acg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509747	106509747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761655879		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	129	617	2	ENST00000359195.3:c.1741G>A	p.Glu581Lys	p.E581K	ENST00000359195	NM_002649.2	581	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520000	106520000	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs759433704		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	99	444	0	ENST00000359195.3:c.2428C>A	p.Pro810Thr	p.P810T	ENST00000359195	NM_002649.2	810	Cca/Aca																																																																														
SMO	6608	MSKCC	GRCh37	7	128845484	128845484	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755698791		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	165	749	1	ENST00000249373.3:c.781C>T	p.Arg261Cys	p.R261C	ENST00000249373	NM_005631.4	261	Cgc/Tgc																																																																														
SMO	6608	MSKCC	GRCh37	7	128850942	128850942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	100	572	0	ENST00000249373.3:c.1789G>A	p.Asp597Asn	p.D597N	ENST00000249373	NM_005631.4	597	Gac/Aac																																																																														
EZH2	2146	MSKCC	GRCh37	7	148543665	148543665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	59	569	0	ENST00000320356.2:c.143A>G	p.Lys48Arg	p.K48R	ENST00000320356	NM_004456.4	48	aAa/aGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874337	151874337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	63	606	1	ENST00000262189.6:c.8201C>A	p.Thr2734Asn	p.T2734N	ENST00000262189	NM_170606.2	2734	aCt/aAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874613	151874613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	55	520	0	ENST00000262189.6:c.7925C>A	p.Ser2642Tyr	p.S2642Y	ENST00000262189	NM_170606.2	2642	tCt/tAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884466	151884466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1435892915		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	136	543	0	ENST00000262189.6:c.4889C>T	p.Ser1630Leu	p.S1630L	ENST00000262189	NM_170606.2	1630	tCg/tTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38157028	38157028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	149	797	1	ENST00000317025.8:c.2692C>T	p.Arg898Cys	p.R898C	ENST00000317025	NM_023034.1	898	Cgt/Tgt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187215	38187215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763425861		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	232	976	2	ENST00000317025.8:c.1262G>A	p.Arg421Gln	p.R421Q	ENST00000317025	NM_023034.1	421	cGa/cAa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187408	38187408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1243215593		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	116	537	1	ENST00000317025.8:c.1069C>T	p.Arg357Trp	p.R357W	ENST00000317025	NM_023034.1	357	Cgg/Tgg																																																																														
LYN	4067	MSKCC	GRCh37	8	56922561	56922561	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	170	684	0	ENST00000519728.1:c.1431A>C	p.Lys477Asn	p.K477N	ENST00000519728	NM_002350.3	477	aaA/aaC																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992764	68992764	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs769067107		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	31	770	1	ENST00000288368.4:c.1729C>T	p.Arg577Ter	p.R577*	ENST00000288368	NM_024870.2	577	Cga/Tga																																																																														
PREX2	80243	MSKCC	GRCh37	8	69009351	69009351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	160	581	1	ENST00000288368.4:c.2468A>G	p.Tyr823Cys	p.Y823C	ENST00000288368	NM_024870.2	823	tAt/tGt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69012039	69012039	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	157	710	0	ENST00000288368.4:c.2676A>C	p.Arg892Ser	p.R892S	ENST00000288368	NM_024870.2	892	agA/agC																																																																														
PREX2	80243	MSKCC	GRCh37	8	69012076	69012076	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	74	504	0	ENST00000288368.4:c.2713A>C	p.Lys905Gln	p.K905Q	ENST00000288368	NM_024870.2	905	Aag/Cag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028029	69028029	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	133	694	0	ENST00000288368.4:c.3188A>C	p.Lys1063Thr	p.K1063T	ENST00000288368	NM_024870.2	1063	aAg/aCg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058531	69058531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	196	819	1	ENST00000288368.4:c.4175C>A	p.Pro1392His	p.P1392H	ENST00000288368	NM_024870.2	1392	cCt/cAt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5066787	5066787	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs560489093		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	47	246	0	ENST00000381652.3:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000381652	NM_004972.3	442	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528648	8528648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	74	501	1	ENST00000356435.5:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000356435		162	Gat/Tat																																																																														
PAX5	5079	MSKCC	GRCh37	9	36840615	36840615	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1282780266		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	64	597	1	ENST00000358127.4:c.1118G>A	p.Ser373Asn	p.S373N	ENST00000358127	NM_001280556.1	373	aGc/aAc																																																																														
PAX5	5079	MSKCC	GRCh37	9	37002648	37002648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	97	500	1	ENST00000358127.4:c.601G>A	p.Glu201Lys	p.E201K	ENST00000358127	NM_001280556.1	201	Gaa/Aaa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229567	98229567	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs778260156		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	131	613	1	ENST00000331920.6:c.2391C>A	p.Tyr797Ter	p.Y797*	ENST00000331920	NM_000264.3	797	taC/taA																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268704	98268704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774822170		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	122	464	1	ENST00000331920.6:c.379G>A	p.Glu127Lys	p.E127K	ENST00000331920	NM_000264.3	127	Gag/Aag																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249765	110249765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1059912		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	157	708	0	ENST00000374672.4:c.910G>A	p.Asp304Asn	p.D304N	ENST00000374672	NM_004235.4	304	Gac/Aac																																																																														
ABL1	25	MSKCC	GRCh37	9	133750417	133750417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	44	681	0	ENST00000318560.5:c.1248C>A	p.Phe416Leu	p.F416L	ENST00000318560	NM_005157.4	416	ttC/ttA																																																																														
ABL1	25	MSKCC	GRCh37	9	133759442	133759442	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754252285		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	130	676	3	ENST00000318560.5:c.1765C>T	p.Arg589Cys	p.R589C	ENST00000318560	NM_005157.4	589	Cgc/Tgc																																																																														
ABL1	25	MSKCC	GRCh37	9	133759527	133759527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	88	743	2	ENST00000318560.5:c.1850G>A	p.Arg617His	p.R617H	ENST00000318560	NM_005157.4	617	cGc/cAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778026	135778026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1336228562		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	74	636	2	ENST00000298552.3:c.2357G>A	p.Arg786Gln	p.R786Q	ENST00000298552	NM_001162426.1	786	cGa/cAa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778098	135778098	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	186	693	0	ENST00000298552.3:c.2285A>C	p.Asn762Thr	p.N762T	ENST00000298552	NM_001162426.1	762	aAt/aCt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787720	135787720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770653972		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	70	626	0	ENST00000298552.3:c.862C>T	p.Arg288Cys	p.R288C	ENST00000298552	NM_001162426.1	288	Cgt/Tgt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135796804	135796804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1223799508		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	79	507	2	ENST00000298552.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000298552	NM_001162426.1	228	cGa/cAa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797258	135797258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514834		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	18	402	1	ENST00000298552.3:c.611G>A	p.Arg204His	p.R204H	ENST00000298552	NM_001162426.1	204	cGt/cAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931828	39931828	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	146	330	0	ENST00000378444.4:c.2771T>G	p.Phe924Cys	p.F924C	ENST00000378444	NM_001123385.1	924	tTt/tGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929227	44929227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	118	336	0	ENST00000377967.4:c.2327A>G	p.Asp776Gly	p.D776G	ENST00000377967	NM_021140.2	776	gAc/gGc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412094	63412094	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374751715		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	109	540	1	ENST00000330258.3:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000330258	NM_152424.3	358	cGa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76874295	76874295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	176	328	0	ENST00000373344.5:c.5427G>T	p.Glu1809Asp	p.E1809D	ENST00000373344	NM_000489.3	1809	gaG/gaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76939761	76939761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	202	387	0	ENST00000373344.5:c.987G>T	p.Lys329Asn	p.K329N	ENST00000373344	NM_000489.3	329	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76954099	76954099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	167	356	0	ENST00000373344.5:c.152G>A	p.Gly51Glu	p.G51E	ENST00000373344	NM_000489.3	51	gGa/gAa																																																																														
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	207	378	0	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217381	123217381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	170	296	1	ENST00000218089.9:c.3035G>A	p.Arg1012Gln	p.R1012Q	ENST00000218089	NM_001042749.1	1012	cGa/cAa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6036981	6036981	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777286241		P-0023271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	121	671	0	ENST00000265849.7:c.779C>T	p.Ser260Phe	p.S260F	ENST00000265849	NM_000535.5	260	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0023364-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			397	455	814	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0023364-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			158	256	344	1	ENST00000257430.4:c.834+1G>A		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64126884	64126886	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0023364-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			752	469	922	0	ENST00000334205.4:c.91_93del	p.Glu31del	p.E31del	ENST00000334205	NM_003942.2	30	gtGGAg/gtg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348565	89348565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023364-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	263	970	1	ENST00000301030.4:c.4385G>T	p.Arg1462Ile	p.R1462I	ENST00000301030	NM_001256183.1	1462	aGa/aTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247112	153247255	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATGATTCATCAGGAGAGCATTTAAGGGAGAGATAAGAGATCTTACCTGTAATGAATAGACTCTATTAGTATGCCCCTGCAACGTGTGTAGACAGGTTTCAGTCTCTGGATCCCACACCTTTACCATAAAATCATATGCTCCAC	TATGATTCATCAGGAGAGCATTTAAGGGAGAGATAAGAGATCTTACCTGTAATGAATAGACTCTATTAGTATGCCCCTGCAACGTGTGTAGACAGGTTTCAGTCTCTGGATCCCACACCTTTACCATAAAATCATATGCTCCAC	-			P-0023364-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			89	45	149	0	ENST00000281708.4:c.1547_1644+46del		p.X516_splice	ENST00000281708	NM_033632.3	516																																																																															
BRCA2	675	MSKCC	GRCh37	13	32950860	32950860	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023364-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			744	145	523	0	ENST00000380152.3:c.8686C>G	p.Arg2896Gly	p.R2896G	ENST00000380152		2896	Cgt/Ggt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	72	187	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	108	303	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913384		P-0026305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	106	279	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913384		P-0026305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	106	279	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913384		P-0026305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	106	279	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123260396	123260396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	33	292	0	ENST00000358487.5:c.1505G>C	p.Gly502Ala	p.G502A	ENST00000358487	NM_000141.4	502	gGa/gCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	211	457	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69631102	69631102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121917704		P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	130	570	1	ENST00000334134.2:c.310C>T	p.Arg104Ter	p.R104*	ENST00000334134	NM_005247.2	104	Cga/Tga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47205368	47205368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	156	473	0	ENST00000409792.3:c.47A>G	p.Tyr16Cys	p.Y16C	ENST00000409792	NM_014159.6	16	tAc/tGc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655479	67655479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs769948988		P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	246	481	0	ENST00000264010.4:c.1342C>T	p.Arg448Ter	p.R448*	ENST00000264010	NM_006565.3	448	Cga/Tga																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873686	35873727	+	inframe_deletion	In_Frame_Del	DEL	CTCGAGGCGGATCTCCTGCAGCTCCTTGACCATCTGCTCGTA	CTCGAGGCGGATCTCCTGCAGCTCCTTGACCATCTGCTCGTA	-			P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	210	444	0	ENST00000216797.5:c.124_165del	p.Tyr42_Glu55del	p.Y42_E55del	ENST00000216797	NM_020529.2	42	TACGAGCAGATGGTCAAGGAGCTGCAGGAGATCCGCCTCGAG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578562	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTACTGTAGGA	GAGTACTGTAGGA	-			P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	346	706	0	ENST00000269305.4:c.376-8_380del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436082	56436083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	106	471	0	ENST00000407977.2:c.1054dup	p.His352ProfsTer91	p.H352Pfs*91	ENST00000407977		352	cac/cCac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0027049-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			495	571	684	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0027049-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			183	81	564	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591083	67591084	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGA			P-0027049-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			73	53	283	0	ENST00000274335.5:c.1677_1679dup	p.Asp560dup	p.D560dup	ENST00000274335		560	att/atTGAt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987368	2987368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775081227		P-0027049-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			603	98	592	0	ENST00000396946.4:c.61G>A	p.Ala21Thr	p.A21T	ENST00000396946	NM_032415.4	21	Gcc/Acc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073647	8073647	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	58	395	0	ENST00000377482.5:c.1012C>G	p.Leu338Val	p.L338V	ENST00000377482	NM_018948.3	338	Ctt/Gtt																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551366	150551366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	121	672	0	ENST00000369026.2:c.641G>C	p.Arg214Pro	p.R214P	ENST00000369026	NM_021960.4	214	cGa/cCa																																																																														
ATM	472	MSKCC	GRCh37	11	108235861	108235861	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	60	406	0	ENST00000278616.4:c.8903T>G	p.Leu2968Trp	p.L2968W	ENST00000278616	NM_000051.3	2968	tTg/tGg																																																																														
RB1	5925	MSKCC	GRCh37	13	48954319	48954319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	108	351	0	ENST00000267163.4:c.1440C>A	p.Asn480Lys	p.N480K	ENST00000267163	NM_000321.2	480	aaC/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	190	598	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																														
BARD1	580	MSKCC	GRCh37	2	215632241	215632241	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs371785856		P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	55	367	0	ENST00000260947.4:c.1533G>T	p.Lys511Asn	p.K511N	ENST00000260947	NM_000465.2	511	aaG/aaT																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319334	62319334	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	C			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1352	80	573	0	ENST00000482936.1:c.1526A>C	p.His509Pro	p.H509P	ENST00000482936		509	cAc/cCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	82	405	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112090669	112090669	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	52	401	0	ENST00000257430.4:c.82G>T	p.Glu28Ter	p.E28*	ENST00000257430	NM_000038.5	28	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112173783	112173783	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	60	319	0	ENST00000257430.4:c.2492T>A	p.Leu831Ter	p.L831*	ENST00000257430	NM_000038.5	831	tTa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	56	308	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450405	50450405	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1271463285		P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	103	354	0	ENST00000331340.3:c.589G>A	p.Val197Ile	p.V197I	ENST00000331340	NM_006060.4	197	Gtt/Att																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884798	151884798	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	55	309	0	ENST00000262189.6:c.4793+2T>A		p.X1598_splice	ENST00000262189	NM_170606.2	1598																																																																															
JAK2	3717	MSKCC	GRCh37	9	5050744	5050744	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	153	451	0	ENST00000381652.3:c.527A>T	p.Glu176Val	p.E176V	ENST00000381652	NM_004972.3	176	gAa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	113	869	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																														
RARA	5914	MSKCC	GRCh37	17	38508754	38508754	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	65	564	0	ENST00000254066.5:c.802A>T	p.Ile268Phe	p.I268F	ENST00000254066	NM_000964.3	268	Atc/Ttc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630587	187630587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770123806		P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	83	688	0	ENST00000441802.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000441802	NM_005245.3	132	cGa/cAa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955132	17955132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	99	869	1	ENST00000458235.1:c.95C>A	p.Ala32Asp	p.A32D	ENST00000458235	NM_000215.3	32	gCt/gAt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176118146	176118146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	40	360	0	ENST00000367669.3:c.827G>T	p.Arg276Ile	p.R276I	ENST00000367669	NM_022457.5	276	aGa/aTa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097648	8097648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	76	307	0	ENST00000346208.3:c.30G>T	p.Trp10Cys	p.W10C	ENST00000346208		10	tgG/tgT																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741493	17741493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	63	722	1	ENST00000250003.3:c.164C>A	p.Ala55Glu	p.A55E	ENST00000250003	NM_002478.4	55	gCg/gAg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202072	67202072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	124	789	0	ENST00000312629.5:c.1175C>G	p.Pro392Arg	p.P392R	ENST00000312629	NM_003952.2	392	cCg/cGg																																																																														
ATM	472	MSKCC	GRCh37	11	108123552	108123552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	33	468	0	ENST00000278616.4:c.1811C>A	p.Pro604His	p.P604H	ENST00000278616	NM_000051.3	604	cCt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433086	49433086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	153	837	0	ENST00000301067.7:c.8285G>T	p.Gly2762Val	p.G2762V	ENST00000301067	NM_003482.3	2762	gGg/gTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001457	29001458	+	splice_acceptor_variant,intron_variant	Splice_Site	DNP	TG	TG	CT			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	29	271	0	ENST00000282397.4:c.1277-3_1277-2delinsAG		p.X426_splice	ENST00000282397	NM_002019.4	426																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281871	49281871	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs200853229		P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	83	653	0	ENST00000282018.3:c.918C>A	p.Tyr306Ter	p.Y306*	ENST00000282018	NM_020377.2	306	taC/taA																																																																														
TSHR	7253	MSKCC	GRCh37	14	81534636	81534636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	44	671	1	ENST00000298171.2:c.281C>T	p.Ser94Leu	p.S94L	ENST00000298171	NM_000369.2	94	tCa/tTa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572475	95572475	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	80	538	0	ENST00000343455.3:c.2890G>T	p.Glu964Ter	p.E964*	ENST00000343455	NM_177438.2	964	Gag/Tag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640500	3640500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	77	806	0	ENST00000294008.3:c.3139G>T	p.Gly1047Trp	p.G1047W	ENST00000294008	NM_032444.2	1047	Ggg/Tgg																																																																														
RARA	5914	MSKCC	GRCh37	17	38511548	38511548	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	104	605	0	ENST00000254066.5:c.1046A>G	p.Asp349Gly	p.D349G	ENST00000254066	NM_000964.3	349	gAc/gGc																																																																														
YES1	7525	MSKCC	GRCh37	18	743344	743344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1341514002		P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	107	620	0	ENST00000314574.4:c.796G>A	p.Ala266Thr	p.A266T	ENST00000314574	NM_005433.3	266	Gca/Aca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220895	36220895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	39	247	0	ENST00000222270.7:c.4945G>T	p.Ala1649Ser	p.A1649S	ENST00000222270	NM_014727.1	1649	Gcc/Tcc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791754	42791754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	59	706	2	ENST00000575354.2:c.640C>T	p.His214Tyr	p.H214Y	ENST00000575354	NM_015125.3	214	Cac/Tac																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906412	50906412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	51	810	2	ENST00000440232.2:c.1073G>T	p.Arg358Leu	p.R358L	ENST00000440232	NM_002691.3	358	cGg/cTg																																																																														
ALK	238	MSKCC	GRCh37	2	29543739	29543739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	53	530	1	ENST00000389048.3:c.1424C>T	p.Pro475Leu	p.P475L	ENST00000389048	NM_004304.4	475	cCt/cTt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793293	242793293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	53	876	1	ENST00000334409.5:c.784C>A	p.Pro262Thr	p.P262T	ENST00000334409	NM_005018.2	262	Ccc/Acc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851573	134851573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	73	566	0	ENST00000398015.3:c.979C>A	p.Arg327Ser	p.R327S	ENST00000398015	NM_004441.4	327	Cgc/Agc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474638	138474638	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	49	668	0	ENST00000289153.2:c.355G>C	p.Gly119Arg	p.G119R	ENST00000289153	NM_006219.2	119	Ggg/Cgg																																																																														
KDR	3791	MSKCC	GRCh37	4	55976570	55976570	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	56	491	0	ENST00000263923.4:c.1255G>T	p.Val419Phe	p.V419F	ENST00000263923	NM_002253.2	419	Gtc/Ttc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143029312	143029312	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	26	377	0	ENST00000262992.4:c.2308A>T	p.Asn770Tyr	p.N770Y	ENST00000262992	NM_001101669.1	770	Aat/Tat																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876334	35876334	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1261225210		P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	74	557	1	ENST00000303115.3:c.1126G>T	p.Ala376Ser	p.A376S	ENST00000303115	NM_002185.3	376	Gca/Tca																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721296	176721296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	62	412	0	ENST00000439151.2:c.6927G>T	p.Leu2309Phe	p.L2309F	ENST00000439151	NM_022455.4	2309	ttG/ttT																																																																														
CBL	867	MSKCC	GRCh37	11	119170399	119170399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	66	532	1	ENST00000264033.4:c.2629G>T	p.Ala877Ser	p.A877S	ENST00000264033	NM_005188.3	877	Gct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	178	575	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	225	657	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390186	89390186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	136	407	0	ENST00000336596.2:c.935G>T	p.Arg312Leu	p.R312L	ENST00000336596	NM_005233.5	312	cGg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	49	511	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191218	185191218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	54	419	0	ENST00000265026.3:c.2099C>T	p.Ser700Phe	p.S700F	ENST00000265026	NM_004721.4	700	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	166	692	0	ENST00000304494.5:c.457+1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	166	692	0	ENST00000304494.5:c.457+1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0027860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	166	692	0	ENST00000304494.5:c.457+1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	191	444	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577555	7577555	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	348	581	0	ENST00000269305.4:c.726C>A	p.Cys242Ter	p.C242*	ENST00000269305	NM_001126112.2	242	tgC/tgA																																																																														
RHEB	6009	MSKCC	GRCh37	7	151216555	151216648	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GGTAGCCCAGGATCGCGATCTTCCGGGACTTGGACTGCGGCATCTTGGCGGCCTCCTCAGCCCCGGCCCAACCACATCAACCGCGGCGGCGGTG	GGTAGCCCAGGATCGCGATCTTCCGGGACTTGGACTGCGGCATCTTGGCGGCCTCCTCAGCCCCGGCCCAACCACATCAACCGCGGCGGCGGTG	AGTA			P-0028207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	10	243	0	ENST00000262187.5:c.-51_43delinsTACT		p.*17*	ENST00000262187	NM_005614.3																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0028262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	501	335	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346311	73346311	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	29	308	0	ENST00000377767.4:c.1489A>C	p.Asn497His	p.N497H	ENST00000377767	NM_014953.3	497	Aat/Cat																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259288	36259292	+	protein_altering_variant	In_Frame_Del	DEL	GCCAG	GCCAG	CA			P-0028262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	286	268	1	ENST00000300305.3:c.199_203delinsTG	p.Leu67_Ala68delinsCys	p.L67_A68delinsC	ENST00000300305		67	CTGGCc/TGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225060		P-0028283-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			263	367	492	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43738607	43738608	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028283-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			257	246	488	0	ENST00000382044.4:c.3017_3018del	p.Glu1006ValfsTer13	p.E1006Vfs*13	ENST00000382044	NM_001141980.1	1006	gAG/g																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285201	15285201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028283-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			891	225	823	0	ENST00000263388.2:c.4414G>A	p.Glu1472Lys	p.E1472K	ENST00000263388	NM_000435.2	1472	Gag/Aag																																																																														
XIAP	331	MSKCC	GRCh37	X	123025153	123025153	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028283-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			327	115	370	0	ENST00000355640.3:c.1043T>A	p.Leu348His	p.L348H	ENST00000355640		348	cTt/cAt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36934823	36934823	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145256322		P-0028675-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			110	51	281	0	ENST00000361632.4:c.1510G>A	p.Val504Met	p.V504M	ENST00000361632		504	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578474	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028675-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			96	216	458	2	ENST00000269305.4:c.456del	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	152	ccG/cc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026757	6026758	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs863224498		P-0028675-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			84	19	147	0	ENST00000265849.7:c.1638_1639del	p.Ser547ArgfsTer14	p.S547Rfs*14	ENST00000265849	NM_000535.5	546	ttTTca/ttca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	472	248	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	979	686	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
RB1	5925	MSKCC	GRCh37	13	49030465	49030466	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	309	255	10	ENST00000267163.4:c.1941_1942del	p.Ser648ThrfsTer4	p.S648Tfs*4	ENST00000267163	NM_000321.2	647	cTT/c																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245912902	245912902	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1331325646		P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	117	242	0	ENST00000388985.4:c.1250T>G	p.Leu417Arg	p.L417R	ENST00000388985		417	cTt/cGt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137029	64137029	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	259	632	0	ENST00000334205.4:c.1540G>C	p.Val514Leu	p.V514L	ENST00000334205	NM_003942.2	514	Gtg/Ctg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436585	110436585	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	299	725	1	ENST00000375856.3:c.1816T>C	p.Ser606Pro	p.S606P	ENST00000375856	NM_003749.2	606	Tcg/Ccg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149510189	149510189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	200	517	0	ENST00000261799.4:c.1280C>T	p.Pro427Leu	p.P427L	ENST00000261799	NM_002609.3	427	cCt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0028898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	391	500	1	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830288	72830288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	25	409	0	ENST00000268489.5:c.6293C>T	p.Ser2098Leu	p.S2098L	ENST00000268489	NM_006885.3	2098	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108224594	108224594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658519		P-0031298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	29	380	0	ENST00000278616.4:c.8773G>A	p.Gly2925Ser	p.G2925S	ENST00000278616	NM_000051.3	2925	Ggt/Agt																																																																														
ATR	545	MSKCC	GRCh37	3	142185254	142185254	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	55	386	0	ENST00000350721.4:c.6809T>A	p.Leu2270His	p.L2270H	ENST00000350721	NM_001184.3	2270	cTt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0031772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	154	680	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61197631	61197631	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs775763888		P-0031772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	56	441	0	ENST00000301761.2:c.13A>G	p.Thr5Ala	p.T5A	ENST00000301761	NM_017841.2	5	Aca/Gca																																																																														
TET1	80312	MSKCC	GRCh37	10	70411679	70411679	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	38	429	0	ENST00000373644.4:c.4353A>T	p.Glu1451Asp	p.E1451D	ENST00000373644	NM_030625.2	1451	gaA/gaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426722	212426722	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	41	423	0	ENST00000342788.4:c.2393T>C	p.Leu798Pro	p.L798P	ENST00000342788	NM_005235.2	798	cTt/cCt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589020	67589025	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACACTA	ACACTA	-			P-0031772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	18	227	0	ENST00000274335.5:c.1112_1117del	p.Thr371_Leu372del	p.T371_L372del	ENST00000274335		371	ACACTA/-																																																																														
TEK	7010	MSKCC	GRCh37	9	27180351	27180351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	25	328	0	ENST00000380036.4:c.1015C>A	p.Gln339Lys	p.Q339K	ENST00000380036	NM_000459.3	339	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	771	670	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519947		P-0032093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	334	574	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112179309	112179309	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs539168162		P-0032093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	102	356	0	ENST00000257430.4:c.8018G>C	p.Arg2673Thr	p.R2673T	ENST00000257430	NM_000038.5	2673	aGa/aCa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141549486	141549486	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	142	500	0	ENST00000220592.5:c.2102G>C	p.Gly701Ala	p.G701A	ENST00000220592	NM_012154.3	701	gGg/gCg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740487	145740551	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCAGCCTGGCCTCAGCCCAGCCTCAGCCCTGGCAGCCACGCTCACCAGACAGGATCCGCATGA	CTGCAGCCTGGCCTCAGCCCAGCCTCAGCCCTGGCAGCCACGCTCACCAGACAGGATCCGCATGA	-			P-0032093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1312	354	703	0	ENST00000428558.2:c.1466_1484-31del		p.X489_splice	ENST00000428558	NM_004260.3	489																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784404	9784404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	245	591	0	ENST00000377346.4:c.2789T>C	p.Val930Ala	p.V930A	ENST00000377346	NM_005026.3	930	gTc/gCc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11168277	11168277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	69	570	0	ENST00000361445.4:c.7595C>T	p.Ala2532Val	p.A2532V	ENST00000361445	NM_004958.3	2532	gCg/gTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190747	11190747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759603938		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	137	656	1	ENST00000361445.4:c.5452C>T	p.Arg1818Cys	p.R1818C	ENST00000361445	NM_004958.3	1818	Cgt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256633	16256634	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	160	421	0	ENST00000375759.3:c.3899_3900del	p.Ile1300AsnfsTer10	p.I1300Nfs*10	ENST00000375759	NM_015001.2	1300	ATa/a																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932103	36932103	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	147	446	0	ENST00000361632.4:c.2366A>G	p.Asn789Ser	p.N789S	ENST00000361632		789	aAc/aGc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932353	36932353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	282	687	1	ENST00000361632.4:c.2116C>T	p.Pro706Ser	p.P706S	ENST00000361632		706	Ccg/Tcg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	159	408	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1181132297		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	94	462	0	ENST00000342505.4:c.1016del	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
NRAS	4893	MSKCC	GRCh37	1	115251236	115251236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	173	547	0	ENST00000369535.4:c.490C>T	p.Arg164Cys	p.R164C	ENST00000369535	NM_002524.4	164	Cgc/Tgc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851325	156851325	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201891311		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	113	582	0	ENST00000524377.1:c.2282G>A	p.Arg761Gln	p.R761Q	ENST00000524377	NM_002529.3	761	cGg/cAg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729671	162729671	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376303676		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	166	461	1	ENST00000367921.3:c.757G>A	p.Gly253Ser	p.G253S	ENST00000367921	NM_006182.2	253	Ggc/Agc																																																																														
TET1	80312	MSKCC	GRCh37	10	70441195	70441195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	138	521	0	ENST00000373644.4:c.4864C>T	p.Arg1622Ter	p.R1622*	ENST00000373644	NM_030625.2	1622	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685298	89685298	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	124	324	0	ENST00000371953.3:c.193T>C	p.Tyr65His	p.Y65H	ENST00000371953	NM_000314.4	65	Tac/Cac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	54	317	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373348	118373348	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	115	436	0	ENST00000534358.1:c.6741T>A	p.Asp2247Glu	p.D2247E	ENST00000534358	NM_005933.3	2247	gaT/gaA																																																																														
CBL	867	MSKCC	GRCh37	11	119145604	119145604	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	93	383	1	ENST00000264033.4:c.815del	p.Leu272Ter	p.L272*	ENST00000264033	NM_005188.3	270	gcT/gc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	317	425	5	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628513	21628513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	201	540	0	ENST00000421138.2:c.1105G>A	p.Val369Met	p.V369M	ENST00000421138		369	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424180	49424180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	181	412	0	ENST00000301067.7:c.13882C>T	p.Pro4628Ser	p.P4628S	ENST00000301067	NM_003482.3	4628	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446151	49446151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	271	641	0	ENST00000301067.7:c.1315C>T	p.Pro439Ser	p.P439S	ENST00000301067	NM_003482.3	439	Cca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447925	49447925	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	125	333	0	ENST00000301067.7:c.511-2A>G		p.X171_splice	ENST00000301067	NM_003482.3	171																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877335	28877335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750851829		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	137	453	0	ENST00000282397.4:c.3986C>T	p.Ser1329Leu	p.S1329L	ENST00000282397	NM_002019.4	1329	tCg/tTg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061063	38061064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	97	201	0	ENST00000250448.2:c.925dup	p.Leu309ProfsTer106	p.L309Pfs*106	ENST00000250448	NM_004496.3	309	ctc/cCtc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562347	95562347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140875148		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	69	367	0	ENST00000343455.3:c.4910C>T	p.Ser1637Leu	p.S1637L	ENST00000343455	NM_177438.2	1637	tCg/tTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562994	95562995	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCC			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	105	353	0	ENST00000343455.3:c.4260_4262dup	p.Glu1420dup	p.E1420dup	ENST00000343455	NM_177438.2	1420	gat/gaGGAt																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022990	33022990	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	42	337	0	ENST00000300177.4:c.104del	p.Pro35ArgfsTer49	p.P35Rfs*49	ENST00000300177	NM_001191322.1	33	atC/at																																																																														
MGA	23269	MSKCC	GRCh37	15	42026766	42026766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	166	386	0	ENST00000219905.7:c.3890T>C	p.Leu1297Ser	p.L1297S	ENST00000219905	NM_001164273.1	1297	tTg/tCg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478609	99478609	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1330526325		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	87	422	0	ENST00000268035.6:c.3251G>A	p.Arg1084Gln	p.R1084Q	ENST00000268035	NM_000875.3	1084	cGg/cAg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2106666	2106666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772558666		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	248	628	0	ENST00000219476.3:c.670G>A	p.Ala224Thr	p.A224T	ENST00000219476	NM_000548.3	224	Gcc/Acc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2110762	2110762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	139	813	0	ENST00000219476.3:c.1067T>C	p.Val356Ala	p.V356A	ENST00000219476	NM_000548.3	356	gTg/gCg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777952	3777952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	392	967	1	ENST00000262367.5:c.7096C>T	p.Arg2366Trp	p.R2366W	ENST00000262367	NM_004380.2	2366	Cgg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032332	10032332	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	43	372	0	ENST00000330684.3:c.491A>G	p.Asp164Gly	p.D164G	ENST00000330684	NM_001134407.1	164	gAt/gGt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041627	14041627	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	175	420	0	ENST00000311895.7:c.2174A>C	p.Glu725Ala	p.E725A	ENST00000311895	NM_005236.2	725	gAg/gCg																																																																														
CDH1	999	MSKCC	GRCh37	16	68771325	68771325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	45	227	0	ENST00000261769.5:c.7C>A	p.Pro3Thr	p.P3T	ENST00000261769	NM_004360.3	3	Cct/Act																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828963	72828963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	110	636	0	ENST00000268489.5:c.7618C>T	p.Pro2540Ser	p.P2540S	ENST00000268489	NM_006885.3	2540	Ccg/Tcg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830233	72830234	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	68	351	0	ENST00000268489.5:c.6347dup	p.Gln2117AlafsTer39	p.Q2117Afs*39	ENST00000268489	NM_006885.3	2116	ccg/ccCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993581	72993581	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	215	440	1	ENST00000268489.5:c.464del	p.Gly155AlafsTer17	p.G155Afs*17	ENST00000268489	NM_006885.3	155	gGc/gc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805947	89805947	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200215131		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	76	431	2	ENST00000389301.3:c.3949C>T	p.Arg1317Trp	p.R1317W	ENST00000389301	NM_000135.2	1317	Cgg/Tgg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217850	7217850	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	271	699	3	ENST00000380728.2:c.161del	p.Lys54ArgfsTer9	p.K54Rfs*9	ENST00000380728		54	aAg/ag																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217872	7217875	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	243	612	1	ENST00000380728.2:c.136_139del	p.Glu46AsnfsTer16	p.E46Nfs*16	ENST00000380728		46	GAAGaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	230	694	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
RARA	5914	MSKCC	GRCh37	17	38487532	38487532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	89	492	0	ENST00000254066.5:c.62T>C	p.Val21Ala	p.V21A	ENST00000254066	NM_000964.3	21	gTg/gCg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40359707	40359707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	118	462	0	ENST00000293328.3:c.1946G>A	p.Arg649Lys	p.R649K	ENST00000293328	NM_012448.3	649	aGa/aAa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40461469	40461469	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	212	774	0	ENST00000345506.4:c.2189G>C	p.Cys730Ser	p.C730S	ENST00000345506	NM_003152.3	730	tGc/tCc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	89	609	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58701096	58701096	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	103	505	0	ENST00000305921.3:c.687A>C	p.Glu229Asp	p.E229D	ENST00000305921	NM_003620.3	229	gaA/gaC																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59937249	59937249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	81	437	0	ENST00000259008.2:c.113G>A	p.Ser38Asn	p.S38N	ENST00000259008	NM_032043.2	38	aGc/aAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214637	5214637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757423838		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	206	679	0	ENST00000357368.4:c.4429C>T	p.Arg1477Cys	p.R1477C	ENST00000357368	NM_002850.3	1477	Cgt/Tgt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs766222935		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	96	514	2	ENST00000357368.4:c.3072dup	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11135028	11135028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	224	564	0	ENST00000344626.4:c.2995G>A	p.Asp999Asn	p.D999N	ENST00000344626	NM_003072.3	999	Gac/Aac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218138	36218138	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	150	376	0	ENST00000222270.7:c.4085A>C	p.His1362Pro	p.H1362P	ENST00000222270	NM_014727.1	1362	cAc/cCc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	199	573	8	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753644	42753644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759092904		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	249	693	1	ENST00000222329.4:c.620G>A	p.Arg207Gln	p.R207Q	ENST00000222329	NM_006494.2	207	cGa/cAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42793116	42793117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	114	729	0	ENST00000575354.2:c.1012dup	p.Ala338GlyfsTer69	p.A338Gfs*69	ENST00000575354	NM_015125.3	336	-/G																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902166	50902166	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	134	506	0	ENST00000440232.2:c.62del	p.Gly21AlafsTer20	p.G21Afs*20	ENST00000440232	NM_002691.3	20	Ggg/gg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918125	50918127	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs763850764		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	76	675	0	ENST00000440232.2:c.2446_2448del	p.Ser816del	p.S816del	ENST00000440232	NM_002691.3	814	ttCTCc/ttc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52719125	52719125	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771769470		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	107	504	2	ENST00000322088.6:c.901G>A	p.Ala301Thr	p.A301T	ENST00000322088	NM_014225.5	301	Gca/Aca																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222492	39222492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	222	665	0	ENST00000402219.2:c.3118G>A	p.Val1040Ile	p.V1040I	ENST00000402219	NM_005633.3	1040	Gtt/Att																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96919674	96919674	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140860906		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	151	475	0	ENST00000258439.3:c.589C>T	p.Arg197Cys	p.R197C	ENST00000258439	NM_001193304.2	197	Cgc/Tgc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095986	178095986	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201871588		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	145	468	0	ENST00000397062.3:c.1345C>T	p.Arg449Cys	p.R449C	ENST00000397062	NM_006164.4	449	Cgc/Tgc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178129297	178129297	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	86	415	0	ENST00000397062.3:c.8A>T	p.Asp3Val	p.D3V	ENST00000397062	NM_006164.4	3	gAc/gTc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	159	355	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	65	466	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445018	89445018	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	47	425	0	ENST00000336596.2:c.1338T>G	p.Asp446Glu	p.D446E	ENST00000336596	NM_005233.5	446	gaT/gaG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519936		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	221	338	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
KIT	3815	MSKCC	GRCh37	4	55564515	55564515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754738766		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	133	420	0	ENST00000288135.5:c.403C>T	p.Arg135Cys	p.R135C	ENST00000288135	NM_000222.2	135	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540134	187540134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	99	409	0	ENST00000441802.2:c.7606G>A	p.Ala2536Thr	p.A2536T	ENST00000441802	NM_005245.3	2536	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1278901	1278901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772441504		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	174	545	3	ENST00000310581.5:c.2141C>T	p.Thr714Met	p.T714M	ENST00000310581	NM_198253.2	714	aCg/aTg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752795	57752795	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	124	345	0	ENST00000274289.3:c.1133A>G	p.Lys378Arg	p.K378R	ENST00000274289	NM_006622.3	378	aAa/aGa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066722	94066722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	214	497	1	ENST00000369303.4:c.1037C>T	p.Thr346Ile	p.T346I	ENST00000369303	NM_004440.3	346	aCa/aTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528546	157528546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	271	615	0	ENST00000346085.5:c.6271A>G	p.Ile2091Val	p.I2091V	ENST00000346085	NM_020732.3	2091	Atc/Gtc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6036958	6036958	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	178	411	0	ENST00000265849.7:c.802del	p.Tyr268ThrfsTer39	p.Y268Tfs*39	ENST00000265849	NM_000535.5	268	Tac/ac																																																																														
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	266	563	4	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845959	151845959	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	131	628	0	ENST00000262189.6:c.13053del	p.Lys4351AsnfsTer5	p.K4351Nfs*5	ENST00000262189	NM_170606.2	4351	aaA/aa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877811	151877812	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	157	293	0	ENST00000262189.6:c.7133_7134del	p.Thr2378ArgfsTer11	p.T2378Rfs*11	ENST00000262189	NM_170606.2	2378	aCA/a																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340356	8340356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs553232071		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	160	414	0	ENST00000356435.5:c.5240G>A	p.Arg1747His	p.R1747H	ENST00000356435		1747	cGt/cAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341261	8341261	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759691127		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	133	290	0	ENST00000356435.5:c.4955C>T	p.Ala1652Val	p.A1652V	ENST00000356435		1652	gCc/gTc																																																																														
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs780753361		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	201	648	0	ENST00000358127.4:c.963dup	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	163	505	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249372	110249372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	372	911	5	ENST00000374672.4:c.1201G>A	p.Ala401Thr	p.A401T	ENST00000374672	NM_004235.4	401	Gcg/Acg																																																																														
ABL1	25	MSKCC	GRCh37	9	133730335	133730335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	211	464	0	ENST00000318560.5:c.401G>A	p.Arg134His	p.R134H	ENST00000318560	NM_005157.4	134	cGc/cAc																																																																														
ABL1	25	MSKCC	GRCh37	9	133759912	133759913	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	192	624	0	ENST00000318560.5:c.2236_2237del	p.Gln746ValfsTer2	p.Q746Vfs*2	ENST00000318560	NM_005157.4	745	agACag/agag																																																																														
ABL1	25	MSKCC	GRCh37	9	133760447	133760447	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771729224		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	169	541	1	ENST00000318560.5:c.2770G>A	p.Gly924Arg	p.G924R	ENST00000318560	NM_005157.4	924	Ggg/Agg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137293658	137293658	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	223	782	0	ENST00000481739.1:c.213del	p.Met72TrpfsTer27	p.M72Wfs*27	ENST00000481739	NM_002957.4	70	tCc/tc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923001	39923001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	237	313	0	ENST00000378444.4:c.3707A>G	p.Glu1236Gly	p.E1236G	ENST00000378444	NM_001123385.1	1236	gAa/gGa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161392	55161392	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767697835		P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	117	421	0	ENST00000257290.5:c.3223G>A	p.Asp1075Asn	p.D1075N	ENST00000257290	NM_006206.4	1075	Gac/Aac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492897	56492898	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0032288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	98	297	0	ENST00000407977.2:c.41_42delinsG	p.Pro14ArgfsTer4	p.P14Rfs*4	ENST00000407977		14	cCC/cG																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395108	139395108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371414501		P-0032353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	8	608	1	ENST00000277541.6:c.5830G>A	p.Ala1944Thr	p.A1944T	ENST00000277541	NM_017617.3	1944	Gcc/Acc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0032353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	8	439	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	594	427	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	240	319	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518512	204518512	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	229	314	0	ENST00000367182.3:c.1175T>A	p.Val392Glu	p.V392E	ENST00000367182	NM_001278516.1	392	gTg/gAg																																																																														
NF2	4771	MSKCC	GRCh37	22	30038231	30038231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	297	448	0	ENST00000338641.4:c.404C>T	p.Pro135Leu	p.P135L	ENST00000338641	NM_000268.3	135	cCt/cTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144027	11144027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770680174		P-0032956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	1614	499	0	ENST00000344626.4:c.3608G>A	p.Arg1203His	p.R1203H	ENST00000344626	NM_003072.3	1203	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576878	7576878	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	667	628	0	ENST00000269305.4:c.968del	p.Leu323ArgfsTer22	p.L323Rfs*22	ENST00000269305	NM_001126112.2	323	cTg/cg																																																																														
PAK7	0	MSKCC	GRCh37	20	9546887	9546887	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	102	428	0	ENST00000353224.5:c.1135A>G	p.Lys379Glu	p.K379E	ENST00000353224	NM_177990.2	379	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	26	763	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441261	52441261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	20	466	0	ENST00000460680.1:c.509T>G	p.Phe170Cys	p.F170C	ENST00000460680	NM_004656.3	170	tTt/tGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55564615	55564615	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs149092990		P-0033005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	22	558	0	ENST00000288135.5:c.503C>A	p.Ala168Glu	p.A168E	ENST00000288135	NM_000222.2	168	gCg/gAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481403	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0033005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	8	468	1	ENST00000288602.6:c.1405_1406delinsAT	p.Gly469Ile	p.G469I	ENST00000288602	NM_004333.4	469	GGa/ATa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	587	720	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	205	367	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	187	451	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	187	451	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549725	187549725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199516712		P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	152	540	0	ENST00000441802.2:c.4516C>T	p.Arg1506Cys	p.R1506C	ENST00000441802	NM_005245.3	1506	Cgt/Tgt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	129	470	2	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	187	451	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353815	15353815	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780028668		P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	101	453	0	ENST00000263377.2:c.3065C>T	p.Pro1022Leu	p.P1022L	ENST00000263377	NM_058243.2	1022	cCg/cTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	85	378	0				ENST00000310581	NM_198253.2																																																																																
MTOR	2475	MSKCC	GRCh37	1	11190770	11190770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757173592		P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	207	662	0	ENST00000361445.4:c.5429C>T	p.Ala1810Val	p.A1810V	ENST00000361445	NM_004958.3	1810	gCc/gTc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137252	64137252	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1398636953		P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	196	594	1	ENST00000334205.4:c.1684C>T	p.Pro562Ser	p.P562S	ENST00000334205	NM_003942.2	562	Ccc/Tcc																																																																														
POLE	5426	MSKCC	GRCh37	12	133256147	133256147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	234	642	0	ENST00000320574.5:c.514C>T	p.Pro172Ser	p.P172S	ENST00000320574	NM_006231.2	172	Cct/Tct																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658900	3658901	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	220	644	2	ENST00000294008.3:c.65_66delinsTT	p.Ala22Val	p.A22V	ENST00000294008	NM_032444.2	22	gCC/gTT																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25991699	25991699	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	244	618	0	ENST00000435504.4:c.543A>T	p.Gln181His	p.Q181H	ENST00000435504		181	caA/caT																																																																														
FANCC	2176	MSKCC	GRCh37	9	98011440	98011441	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0033151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	172	627	1	ENST00000289081.3:c.133_134delinsTC	p.Leu45Ser	p.L45S	ENST00000289081	NM_000136.2	45	CTa/TCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578484	7578485	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	242	799	0	ENST00000269305.4:c.445dup	p.Ser149PhefsTer32	p.S149Ffs*32	ENST00000269305	NM_001126112.2	149	tcc/tTcc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618887	37618887	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	340	636	0	ENST00000447079.4:c.565del	p.Glu189SerfsTer2	p.E189Sfs*2	ENST00000447079	NM_015083.1	188	cGg/cg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100342	157100342	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1178936568		P-0033718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	19	206	0	ENST00000346085.5:c.1279A>T	p.Ser427Cys	p.S427C	ENST00000346085	NM_020732.3	427	Agc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0034442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	323	586	1	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
ATRX	546	MSKCC	GRCh37	X	76888722	76888725	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0034442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	216	559	0	ENST00000373344.5:c.5104_5107del	p.Glu1702TyrfsTer22	p.E1702Yfs*22	ENST00000373344	NM_000489.3	1702	GAAAta/ta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	107	349	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266110	41266110	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	220	332	0	ENST00000349496.5:c.107A>C	p.His36Pro	p.H36P	ENST00000349496	NM_001904.3	36	cAt/cCt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	83	325	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106336	27106337	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	216	685	0	ENST00000324856.7:c.5952_5953del	p.Ser1985GlnfsTer13	p.S1985Qfs*13	ENST00000324856	NM_006015.4	1983	TGt/t																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	120	423	3	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	136	469	0	ENST00000330684.3:c.4021A>G	p.Ser1341Gly	p.S1341G	ENST00000330684	NM_001134407.1	1341	Agc/Ggc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	173	570	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115780	8115780	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	191	489	1	ENST00000346208.3:c.1131del	p.Val378CysfsTer26	p.V378Cfs*26	ENST00000346208		376	Aaa/aa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	353	838	7	ENST00000357654.3:c.1961del	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374444088		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	216	583	0	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	174	458	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	212	536	10	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717663	89717663	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	190	529	0	ENST00000371953.3:c.688G>T	p.Gly230Ter	p.G230*	ENST00000371953	NM_000314.4	230	Gga/Tga																																																																														
RAD50	10111	MSKCC	GRCh37	5	131944381	131944382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs748536322		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	82	196	1	ENST00000265335.6:c.2801dup	p.Asn934LysfsTer10	p.N934Kfs*10	ENST00000265335		931	-/A																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	188	487	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
EP300	2033	MSKCC	GRCh37	22	41489075	41489076	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	162	431	0	ENST00000263253.7:c.70_71del	p.Ser24GlyfsTer14	p.S24Gfs*14	ENST00000263253	NM_001429.3	23	CTc/c																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911172	29911172	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	71	352	0	ENST00000376809.5:c.471G>A	p.Trp157Ter	p.W157*	ENST00000376809	NM_002116.7	157	tgG/tgA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	303	878	6	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37089123	37089125	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs1485223012		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	332	484	0	ENST00000231790.2:c.1852_1854del	p.Lys618del	p.K618del	ENST00000231790	NM_000249.3	615	ctGAAg/ctg																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139079	50139079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs925989732		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	245	650	1	ENST00000246792.3:c.484G>A	p.Ala162Thr	p.A162T	ENST00000246792	NM_006270.3	162	Gcc/Acc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998316	100998316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	31	85	0	ENST00000325455.5:c.1486C>T	p.Pro496Ser	p.P496S	ENST00000325455	NM_001202474.3	496	Ccc/Tcc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262438	16262438	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	104	362	1	ENST00000375759.3:c.9703A>G	p.Lys3235Glu	p.K3235E	ENST00000375759	NM_015001.2	3235	Aag/Gag																																																																														
POLE	5426	MSKCC	GRCh37	12	133241032	133241032	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs762395135		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	200	502	0	ENST00000320574.5:c.2485A>G	p.Met829Val	p.M829V	ENST00000320574	NM_006231.2	829	Atg/Gtg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66777509	66777509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	180	585	1	ENST00000307102.5:c.879del	p.Arg295GlyfsTer23	p.R295Gfs*23	ENST00000307102	NM_002755.3	292	aCc/ac																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980315	7980316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	161	444	0	ENST00000319144.4:c.1267dup	p.Leu423ProfsTer26	p.L423Pfs*26	ENST00000319144	NM_001139.2	423	ctc/cCtc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372131	45372131	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	200	532	2	ENST00000262160.6:c.1038del	p.Phe346LeufsTer5	p.F346Lfs*5	ENST00000262160	NM_005901.5	346	ttT/tt																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128051628	128051628	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	205	647	0	ENST00000285398.2:c.28+2T>C		p.X10_splice	ENST00000285398	NM_000122.1	10																																																																															
HIST1H1C	3006	MSKCC	GRCh37	6	26056568	26056568	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	195	241	1	ENST00000343677.2:c.89del	p.Gly30ValfsTer33	p.G30Vfs*33	ENST00000343677	NM_005319.3	30	gGt/gt																																																																														
BRAF	673	MSKCC	GRCh37	7	140476781	140476781	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	196	587	0	ENST00000288602.6:c.1625A>G	p.His542Arg	p.H542R	ENST00000288602	NM_004333.4	542	cAt/cGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970950	21970951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs749588877		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	312	847	1	ENST00000304494.5:c.407dup	p.Thr137HisfsTer5	p.T137Hfs*5	ENST00000304494	NM_000077.4	136	ggc/ggGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970950	21970951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs749588877		P-0034935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	312	847	1	ENST00000304494.5:c.407dup	p.Thr137HisfsTer5	p.T137Hfs*5	ENST00000304494	NM_000077.4	136	ggc/ggGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258440	16258440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1440008576		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	162	556	0	ENST00000375759.3:c.5705G>A	p.Arg1902Gln	p.R1902Q	ENST00000375759	NM_015001.2	1902	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	141	379	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023827	27023827	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	86	291	0	ENST00000324856.7:c.936del	p.Gly314AlafsTer49	p.G314Afs*49	ENST00000324856	NM_006015.4	311	taC/ta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	69	554	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
CDC73	79577	MSKCC	GRCh37	1	193181550	193181550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	82	357	0	ENST00000367435.3:c.1097C>T	p.Ala366Val	p.A366V	ENST00000367435	NM_024529.4	366	gCa/gTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70405964	70405964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	42	644	0	ENST00000373644.4:c.3478A>G	p.Lys1160Glu	p.K1160E	ENST00000373644	NM_030625.2	1160	Aaa/Gaa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	142	443	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
WT1	7490	MSKCC	GRCh37	11	32456821	32456821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs992227366		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	174	586	1	ENST00000332351.3:c.71G>A	p.Cys24Tyr	p.C24Y	ENST00000332351	NM_024426.4	24	tGc/tAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64126762	64126762	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	174	629	0	ENST00000334205.4:c.55G>T	p.Ala19Ser	p.A19S	ENST00000334205	NM_003942.2	19	Gcc/Tcc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	142	598	2	ENST00000312629.5:c.870del	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	190	755	0	ENST00000227507.2:c.857C>T	p.Thr286Ile	p.T286I	ENST00000227507	NM_053056.2	286	aCa/aTa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945372	71945372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773625159		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	258	877	1	ENST00000298229.2:c.2260G>A	p.Glu754Lys	p.E754K	ENST00000298229	NM_001567.3	754	Gag/Aag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948548	71948548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1349798484		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	221	775	0	ENST00000298229.2:c.3260G>A	p.Gly1087Asp	p.G1087D	ENST00000298229	NM_001567.3	1087	gGc/gAc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94219106	94219109	+	frameshift_variant	Frame_Shift_Del	DEL	TGAC	TGAC	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	97	335	0	ENST00000323929.3:c.295_298del	p.Val99ThrfsTer10	p.V99Tfs*10	ENST00000323929	NM_005591.3	99	GTCAac/ac																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195706	102195706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	115	425	0	ENST00000263464.3:c.466G>A	p.Ala156Thr	p.A156T	ENST00000263464	NM_001165.4	156	Gcc/Acc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344955	118344955	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	85	238	1	ENST00000534358.1:c.3086del	p.Lys1029ArgfsTer65	p.K1029Rfs*65	ENST00000534358	NM_005933.3	1027	ctA/ct																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	92	337	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416675	416676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	123	429	0	ENST00000399788.2:c.3874dup	p.Thr1292AsnfsTer2	p.T1292Nfs*2	ENST00000399788	NM_001042603.1	1292	act/aAct																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111886024	111886024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201102821		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	33	569	0	ENST00000341259.2:c.1646G>A	p.Arg549Gln	p.R549Q	ENST00000341259	NM_005475.2	549	cGa/cAa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	194	671	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	207	734	2	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549116	21549116	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	151	591	0	ENST00000382592.4:c.3160C>T	p.Arg1054Ter	p.R1054*	ENST00000382592	NM_014572.2	1054	Cga/Tga																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519181	103519181	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	116	369	0	ENST00000355739.4:c.2519T>G	p.Phe840Cys	p.F840C	ENST00000355739	NM_000123.3	840	tTt/tGt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435219	110435219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746894027		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	158	491	1	ENST00000375856.3:c.3182C>T	p.Ser1061Leu	p.S1061L	ENST00000375856	NM_003749.2	1061	tCg/tTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438396	110438396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	31	38	0	ENST00000375856.3:c.5C>T	p.Ala2Val	p.A2V	ENST00000375856	NM_003749.2	2	gCg/gTg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	184	646	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473707	67473707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	178	588	0	ENST00000327367.4:c.787C>A	p.Pro263Thr	p.P263T	ENST00000327367	NM_005902.3	263	Ccc/Acc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99460051	99460051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	156	400	1	ENST00000268035.6:c.2147C>T	p.Ala716Val	p.A716V	ENST00000268035	NM_000875.3	716	gCt/gTt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347093	347093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	271	944	3	ENST00000262320.3:c.1918del	p.Glu640LysfsTer65	p.E640Kfs*65	ENST00000262320	NM_003502.3	640	Gaa/aa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	252	926	5	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	131	384	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993581	72993581	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	146	558	1	ENST00000268489.5:c.464del	p.Gly155AlafsTer17	p.G155Afs*17	ENST00000268489	NM_006885.3	155	gGc/gc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973703	15973703	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	193	504	0	ENST00000268712.3:c.4289T>C	p.Val1430Ala	p.V1430A	ENST00000268712	NM_006311.3	1430	gTa/gCa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131219	17131219	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	284	809	0	ENST00000285071.4:c.233del	p.Lys78SerfsTer52	p.K78Sfs*52	ENST00000285071	NM_144997.5	78	aAg/ag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883774	37883774	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	222	854	1	ENST00000269571.5:c.3391del	p.Leu1131Ter	p.L1131*	ENST00000269571		1129	gCc/gc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40485708	40485708	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs869312887		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	167	514	0	ENST00000264657.5:c.1032G>C	p.Gln344His	p.Q344H	ENST00000264657	NM_139276.2	344	caG/caC																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752444	55752444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422545682		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	270	882	1	ENST00000284073.2:c.902C>T	p.Ala301Val	p.A301V	ENST00000284073	NM_138962.2	301	gCg/gTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438269	56438281	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGATGGCCCA	GGCTGATGGCCCA	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	320	677	0	ENST00000407977.2:c.712_724del	p.Trp238SerfsTer177	p.W238Sfs*177	ENST00000407977		238	TGGGCCATCAGCCag/ag																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774157	56774157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	152	533	0	ENST00000337432.4:c.508G>A	p.Val170Ile	p.V170I	ENST00000337432	NM_058216.2	170	Gta/Ata																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	279	796	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs771001164		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	118	401	2	ENST00000307078.5:c.1214_1215del	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	162	465	1	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374902	45374902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	153	591	0	ENST00000262160.6:c.941G>A	p.Gly314Asp	p.G314D	ENST00000262160	NM_005901.5	314	gGt/gAt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56411576	56411576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	101	306	0	ENST00000348428.3:c.1760C>T	p.Pro587Leu	p.P587L	ENST00000348428	NM_006785.3	587	cCa/cTa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619131	1619132	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	222	692	0	ENST00000344749.5:c.1428_1429del	p.Arg477AlafsTer35	p.R477Afs*35	ENST00000344749	NM_001136139.2	476	tcTCgg/tcgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231399	5231399	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs568688962		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	252	772	3	ENST00000357368.4:c.2077C>T	p.Arg693Cys	p.R693C	ENST00000357368	NM_002850.3	693	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300082	15300082	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs112788166		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	188	619	0	ENST00000263388.2:c.1192+2T>C		p.X398_splice	ENST00000263388	NM_000435.2	398																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36211183	36211183	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	359	1086	4	ENST00000222270.7:c.939del	p.Val314Ter	p.V314*	ENST00000222270	NM_014727.1	312	Aaa/aa																																																																														
AKT2	208	MSKCC	GRCh37	19	40739829	40739829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	298	835	0	ENST00000392038.2:c.1396C>A	p.Gln466Lys	p.Q466K	ENST00000392038	NM_001626.4	466	Cag/Aag																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	114	419	3	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
CIC	23152	MSKCC	GRCh37	19	42799299	42799300	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1158987717		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	62	363	1	ENST00000575354.2:c.4790dup	p.Pro1598ThrfsTer16	p.P1598Tfs*16	ENST00000575354	NM_015125.3	1595	tcc/tCcc																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139882	50139882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	228	807	0	ENST00000246792.3:c.447G>T	p.Gln149His	p.Q149H	ENST00000246792	NM_006270.3	149	caG/caT																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52719066	52719066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	153	568	0	ENST00000322088.6:c.842C>T	p.Thr281Ile	p.T281I	ENST00000322088	NM_014225.5	281	aCa/aTa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605080	46605080	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	203	850	0	ENST00000263734.3:c.1301del	p.Pro434ArgfsTer9	p.P434Rfs*9	ENST00000263734	NM_001430.4	433	Ccc/cc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47705562	47705562	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	112	406	0	ENST00000233146.2:c.2362A>T	p.Thr788Ser	p.T788S	ENST00000233146	NM_000251.2	788	Act/Tct																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	262	531	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	179	450	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570070	212570070	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745408040		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	132	483	0	ENST00000342788.4:c.1171G>A	p.Val391Ile	p.V391I	ENST00000342788	NM_005235.2	391	Gtc/Atc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662194	227662194	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	147	572	0	ENST00000305123.5:c.1261A>G	p.Ser421Gly	p.S421G	ENST00000305123	NM_005544.2	421	Agc/Ggc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	167	837	1	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	23	246	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100974	41100974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1259827929		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	154	582	0	ENST00000373198.4:c.1382G>A	p.Arg461Gln	p.R461Q	ENST00000373198	NM_133170.3	461	cGa/cAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41574689	41574689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	261	870	2	ENST00000263253.7:c.6974C>A	p.Ser2325Tyr	p.S2325Y	ENST00000263253	NM_001429.3	2325	tCc/tAc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	122	430	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
TP63	8626	MSKCC	GRCh37	3	189455623	189455623	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	140	447	0	ENST00000264731.3:c.157G>T	p.Glu53Ter	p.E53*	ENST00000264731	NM_003722.4	53	Gag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55131182	55131182	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	33	583	0	ENST00000257290.5:c.725T>C	p.Val242Ala	p.V242A	ENST00000257290	NM_006206.4	242	gTg/gCg																																																																														
KIT	3815	MSKCC	GRCh37	4	55602911	55602911	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753419764		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	115	360	0	ENST00000288135.5:c.2621C>T	p.Pro874Leu	p.P874L	ENST00000288135	NM_000222.2	874	cCg/cTg																																																																														
FAM175A	0	MSKCC	GRCh37	4	84403315	84403315	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs770769937		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	27	331	0	ENST00000321945.7:c.170A>G	p.Tyr57Cys	p.Y57C	ENST00000321945	NM_139076.2	57	tAt/tGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	213	537	2	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517818	187517819	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	31	363	0	ENST00000441802.2:c.12875_12876del	p.Val4292AlafsTer27	p.V4292Afs*27	ENST00000441802	NM_005245.3	4292	gTG/g																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	188	457	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112116506	112116506	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1257143633		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	70	261	0	ENST00000257430.4:c.551T>C	p.Met184Thr	p.M184T	ENST00000257430	NM_000038.5	184	aTg/aCg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638731	176638731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151165525		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	221	671	0	ENST00000439151.2:c.3331G>A	p.Asp1111Asn	p.D1111N	ENST00000439151	NM_022455.4	1111	Gat/Aat																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553356	106553356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	127	406	0	ENST00000369096.4:c.1321C>T	p.Pro441Ser	p.P441S	ENST00000369096	NM_001198.3	441	Ccg/Tcg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	78	306	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341865	8341865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	113	644	0	ENST00000356435.5:c.4775G>T	p.Arg1592Met	p.R1592M	ENST00000356435		1592	aGg/aTg																																																																														
SYK	6850	MSKCC	GRCh37	9	93624493	93624493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1276980680		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	80	298	0	ENST00000375746.1:c.584G>A	p.Arg195Gln	p.R195Q	ENST00000375746	NM_001174167.1	195	cGa/cAa																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328378	137328380	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs763369916		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	209	834	0	ENST00000481739.1:c.1315_1317del	p.Phe439del	p.F439del	ENST00000481739	NM_002957.4	436	cTCTtc/ctc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400303	139400303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs553328686		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	207	716	0	ENST00000277541.6:c.4045G>A	p.Ala1349Thr	p.A1349T	ENST00000277541	NM_017617.3	1349	Gct/Act																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041265	47041265	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	238	857	0	ENST00000329236.7:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000329236	NM_001204466.1	487	Cct/Tct																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	35	736	3	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
AR	367	MSKCC	GRCh37	X	66765155	66765155	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs868709351		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	11	343	0	ENST00000374690.3:c.167T>A	p.Leu56Gln	p.L56Q	ENST00000374690	NM_000044.3	56	cTg/cAg																																																																														
AR	367	MSKCC	GRCh37	X	66765475	66765475	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1234341494		P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	186	830	0	ENST00000374690.3:c.487A>G	p.Thr163Ala	p.T163A	ENST00000374690	NM_000044.3	163	Acg/Gcg																																																																														
ATRX	546	MSKCC	GRCh37	X	76776354	76776354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	117	660	0	ENST00000373344.5:c.7112C>T	p.Ala2371Val	p.A2371V	ENST00000373344	NM_000489.3	2371	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0035891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	307	715	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399486	139399486	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	420	910	0	ENST00000277541.6:c.4657G>T	p.Glu1553Ter	p.E1553*	ENST00000277541	NM_017617.3	1553	Gag/Tag																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128018806	128018806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0035891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	70	403	0	ENST00000285398.2:c.2062A>G	p.Lys688Glu	p.K688E	ENST00000285398	NM_000122.1	688	Aag/Gag																																																																														
PARP1	142	MSKCC	GRCh37	1	226595610	226595611	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0035891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	211	542	0	ENST00000366794.5:c.20_21del	p.Lys7ThrfsTer38	p.K7Tfs*38	ENST00000366794	NM_001618.3	7	aAG/a																																																																														
RAF1	5894	MSKCC	GRCh37	3	12627221	12627221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	67	422	0	ENST00000251849.4:c.1495T>C	p.Ser499Pro	p.S499P	ENST00000251849	NM_002880.3	499	Tct/Cct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916643	178916669	+	inframe_deletion	In_Frame_Del	DEL	GTGGGGCATCCACTTGATGCCCCCAAG	GTGGGGCATCCACTTGATGCCCCCAAG	-			P-0035891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	184	260	0	ENST00000263967.3:c.30_56del	p.Trp11_Arg19del	p.W11_R19del	ENST00000263967	NM_006218.2	10	ctGTGGGGCATCCACTTGATGCCCCCAAGa/cta																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152007052	152007052	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0035891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	73	292	0	ENST00000262189.6:c.848A>G	p.Glu283Gly	p.E283G	ENST00000262189	NM_170606.2	283	gAa/gGa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571867	64571867	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	60	1053	1	ENST00000337652.1:c.1787A>T	p.Lys596Ile	p.K596I	ENST00000337652	NM_130803.2	596	aAa/aTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822132	72822132	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	23	646	0	ENST00000268489.5:c.10043T>A	p.Leu3348Gln	p.L3348Q	ENST00000268489	NM_006885.3	3348	cTg/cAg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883641	37883641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	54	926	0	ENST00000269571.5:c.3253G>T	p.Val1085Leu	p.V1085L	ENST00000269571		1085	Gta/Tta																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	81	334	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	92	216	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	109	271	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	254	411	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ATM	472	MSKCC	GRCh37	11	108216596	108216596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587778080		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	80	262	0	ENST00000278616.4:c.8545C>T	p.Arg2849Ter	p.R2849*	ENST00000278616	NM_000051.3	2849	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	21	388	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924336	112924336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507536		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	135	343	0	ENST00000351677.2:c.1282G>A	p.Val428Met	p.V428M	ENST00000351677	NM_002834.3	428	Gtg/Atg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249360	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	43	286	0	ENST00000281708.4:c.1417dup	p.Arg473LysfsTer4	p.R473Kfs*4	ENST00000281708	NM_033632.3	473	aga/aAga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	260	405	0	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	50	405	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241722	55241722	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1051753269		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	138	343	1	ENST00000275493.2:c.2170G>A	p.Gly724Ser	p.G724S	ENST00000275493	NM_005228.3	724	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138729528		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	17	424	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																														
HGF	3082	MSKCC	GRCh37	7	81392039	81392039	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757576097		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	110	258	0	ENST00000222390.5:c.238C>T	p.Leu80Phe	p.L80F	ENST00000222390	NM_000601.4	80	Ctt/Ttt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220339	98220339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772406487		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	63	220	0	ENST00000331920.6:c.3124G>A	p.Val1042Met	p.V1042M	ENST00000331920	NM_000264.3	1042	Gtg/Atg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926248	112926248	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs121918468		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	121	346	1	ENST00000351677.2:c.1381G>A	p.Ala461Thr	p.A461T	ENST00000351677	NM_002834.3	461	Gct/Act																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485115	57485115	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754097818		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	60	233	0	ENST00000371085.3:c.949C>T	p.Arg317Cys	p.R317C	ENST00000371085	NM_000516.4	317	Cgc/Tgc																																																																														
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	110	276	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98224163	98224163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138154222		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	81	235	1	ENST00000331920.6:c.2678G>A	p.Arg893His	p.R893H	ENST00000331920	NM_000264.3	893	cGc/cAc																																																																														
B2M	567	MSKCC	GRCh37	15	45007901	45007901	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	62	236	0	ENST00000558401.1:c.346+2T>C		p.X116_splice	ENST00000558401	NM_004048.2	116																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	108	521	1	ENST00000344626.4:c.810del	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52662939	52662939	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	90	320	0	ENST00000394830.3:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000394830	NM_018313.4	472	Cga/Tga																																																																														
MLH1	4292	MSKCC	GRCh37	3	37045935	37045935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63750781		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	106	334	0	ENST00000231790.2:c.350C>T	p.Thr117Met	p.T117M	ENST00000231790	NM_000249.3	117	aCg/aTg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464537	25464537	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752434188		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	94	420	1	ENST00000264709.3:c.1976G>A	p.Arg659His	p.R659H	ENST00000264709	NM_175629.2	659	cGc/cAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	141	453	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120460319	120460319	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1446995271		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	120	398	0	ENST00000256646.2:c.5996del	p.Asn1999MetfsTer32	p.N1999Mfs*32	ENST00000256646	NM_024408.3	1999	aAt/at																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288503	15288503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	26	139	0	ENST00000263388.2:c.4236G>A	p.Trp1412Ter	p.W1412*	ENST00000263388	NM_000435.2	1412	tgG/tgA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521385	187521385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426195084		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	80	337	2	ENST00000441802.2:c.11770C>T	p.Arg3924Cys	p.R3924C	ENST00000441802	NM_005245.3	3924	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105715	27105717	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs765246223		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	45	221	0	ENST00000324856.7:c.5334_5336del	p.Glu1780del	p.E1780del	ENST00000324856	NM_006015.4	1776	GAA/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	34	117	0	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	34	117	0	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																																																														
ATM	472	MSKCC	GRCh37	11	108123616	108123616	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	71	281	0	ENST00000278616.4:c.1880del	p.Phe627SerfsTer22	p.F627Sfs*22	ENST00000278616	NM_000051.3	625	aaT/aa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115263192	115263192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	138	395	0	ENST00000438362.2:c.2158C>T	p.Arg720Cys	p.R720C	ENST00000438362	NM_001242891.1	720	Cgc/Tgc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266046	41266046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	31	163	0	ENST00000349496.5:c.43G>A	p.Glu15Lys	p.E15K	ENST00000349496	NM_001904.3	15	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70361098	70361103	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1426680322		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	26	144	0	ENST00000374080.3:c.6303_6308del	p.Gln2114_Gln2115del	p.Q2114_Q2115del	ENST00000374080		2096	CAGCAG/-																																																																														
ERF	2077	MSKCC	GRCh37	19	42753452	42753452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	111	476	0	ENST00000222329.4:c.812C>T	p.Thr271Met	p.T271M	ENST00000222329	NM_006494.2	271	aCg/aTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031690	69031690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371787029		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	80	332	0	ENST00000288368.4:c.3445C>T	p.Arg1149Cys	p.R1149C	ENST00000288368	NM_024870.2	1149	Cgc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	42058342	42058342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201470885		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	59	195	0	ENST00000219905.7:c.8062G>A	p.Val2688Ile	p.V2688I	ENST00000219905	NM_001164273.1	2688	Gtc/Atc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434958	49434959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	48	305	0	ENST00000301067.7:c.6594dup	p.Tyr2199LeufsTer3	p.Y2199Lfs*3	ENST00000301067	NM_003482.3	2198	-/C																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023743	27023744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	58	212	0	ENST00000324856.7:c.854dup	p.Thr286AsnfsTer114	p.T286Nfs*114	ENST00000324856	NM_006015.4	283	-/G																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71096155	71096155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1450448594		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	68	198	1	ENST00000318789.4:c.602G>A	p.Arg201His	p.R201H	ENST00000318789	NM_032682.5	201	cGc/cAc																																																																														
TET1	80312	MSKCC	GRCh37	10	70406432	70406432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779743688		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	124	474	2	ENST00000373644.4:c.3946G>A	p.Asp1316Asn	p.D1316N	ENST00000373644	NM_030625.2	1316	Gat/Aat																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562118	21562118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	238	672	1	ENST00000382592.4:c.1801G>A	p.Ala601Thr	p.A601T	ENST00000382592	NM_014572.2	601	Gcc/Acc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944606	32944606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	118	431	0	ENST00000380152.3:c.8399C>T	p.Pro2800Leu	p.P2800L	ENST00000380152		2800	cCt/cTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789607	3789607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369991761		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	88	262	0	ENST00000262367.5:c.4252G>A	p.Gly1418Ser	p.G1418S	ENST00000262367	NM_004380.2	1418	Ggc/Agc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993516	72993516	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772845316		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	111	401	0	ENST00000268489.5:c.529G>A	p.Ala177Thr	p.A177T	ENST00000268489	NM_006885.3	177	Gcg/Acg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533887	63533887	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	161	261	0	ENST00000307078.5:c.1267del	p.Leu423SerfsTer35	p.L423Sfs*35	ENST00000307078	NM_004655.3	423	Ctc/tc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144134	11144134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs75911614		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	70	380	0	ENST00000344626.4:c.3715T>C	p.Ser1239Pro	p.S1239P	ENST00000344626	NM_003072.3	1239	Tcc/Ccc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945723	17945723	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199774111		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	118	472	1	ENST00000458235.1:c.2137G>A	p.Ala713Thr	p.A713T	ENST00000458235	NM_000215.3	713	Gcc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214058	36214058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1385766471		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	160	526	0	ENST00000222270.7:c.2884C>T	p.Arg962Cys	p.R962C	ENST00000222270	NM_014727.1	962	Cgc/Tgc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967317	25967317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767307523		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	63	240	0	ENST00000435504.4:c.1889C>T	p.Pro630Leu	p.P630L	ENST00000435504		630	cCg/cTg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39262596	39262596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs766965165		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	98	305	1	ENST00000402219.2:c.910C>T	p.Arg304Ter	p.R304*	ENST00000402219	NM_005633.3	304	Cga/Tga																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719490	61719490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	40	365	0	ENST00000401558.2:c.1693G>A	p.Val565Ile	p.V565I	ENST00000401558	NM_003400.3	565	Gta/Ata																																																																														
CASP8	841	MSKCC	GRCh37	2	202149819	202149819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	88	428	0	ENST00000358485.4:c.1264del	p.Asp422IlefsTer19	p.D422Ifs*19	ENST00000358485	NM_001080125.1	420	caG/ca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248579	212248579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	148	384	0	ENST00000342788.4:c.3688C>T	p.Pro1230Ser	p.P1230S	ENST00000342788	NM_005235.2	1230	Cca/Tca																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024754	31024755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	80	386	0	ENST00000375687.4:c.4243dup	p.Arg1415ProfsTer9	p.R1415Pfs*9	ENST00000375687	NM_015338.5	1413	-/C																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582342	119582342	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	114	244	1	ENST00000316626.5:c.1059del	p.Phe353LeufsTer?	p.F353Lfs*?	ENST00000316626		353	ttT/tt																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031963	26031963	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	51	268	1	ENST00000244661.2:c.326A>G	p.Asn109Ser	p.N109S	ENST00000244661	NM_003537.3	109	aAc/aGc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056050	26056050	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764601216		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	67	240	0	ENST00000343677.2:c.607G>A	p.Val203Ile	p.V203I	ENST00000343677	NM_005319.3	203	Gtc/Atc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55272966	55272966	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775345513		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	96	334	0	ENST00000275493.2:c.3289G>A	p.Val1097Ile	p.V1097I	ENST00000275493	NM_005228.3	1097	Gtt/Att																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570293	87570293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202111708		P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	101	346	0	ENST00000277120.3:c.2033C>T	p.Ala678Val	p.A678V	ENST00000277120		678	gCg/gTg																																																																														
BTK	695	MSKCC	GRCh37	X	100613633	100613633	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	21	200	1	ENST00000308731.7:c.946A>G	p.Thr316Ala	p.T316A	ENST00000308731	NM_000061.2	316	Aca/Gca																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	215	548	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	281	414	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	285	471	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	129	534	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	176	602	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	165	503	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	109	410	2	ENST00000263377.2:c.3061del	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	121	292	2	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	146	443	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023860	27023861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	69	128	0	ENST00000324856.7:c.971dup	p.Ala325ArgfsTer75	p.A325Rfs*75	ENST00000324856	NM_006015.4	322	-/G																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612735	228612735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	249	640	1	ENST00000366696.1:c.292G>A	p.Glu98Lys	p.E98K	ENST00000366696	NM_003493.2	98	Gag/Aag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	442811	442811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	139	392	2	ENST00000399788.2:c.1495del	p.Glu499SerfsTer19	p.E499Sfs*19	ENST00000399788	NM_001042603.1	499	Gag/ag																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	90	197	0	ENST00000256196.4:c.68G>T	p.Gly23Val	p.G23V	ENST00000256196		23	gGc/gTc																																																																														
CDH1	999	MSKCC	GRCh37	16	68853195	68853195	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs886039590		P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	214	479	0	ENST00000261769.5:c.1578G>A	p.Trp526Ter	p.W526*	ENST00000261769	NM_004360.3	526	tgG/tgA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508253	106508253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	115	338	1	ENST00000359195.3:c.247G>A	p.Val83Met	p.V83M	ENST00000359195	NM_002649.2	83	Gtg/Atg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	209	566	4	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99812464	99812465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	98	350	0	ENST00000280892.6:c.204dup	p.Lys69Ter	p.K69*	ENST00000280892	NM_001130678.1	68	-/T																																																																														
MPL	4352	MSKCC	GRCh37	1	43812279	43812279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	233	565	0	ENST00000372470.3:c.1144C>A	p.Pro382Thr	p.P382T	ENST00000372470	NM_005373.2	382	Cct/Act																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944483	71944483	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	208	602	0	ENST00000298229.2:c.2041-2A>G		p.X681_splice	ENST00000298229	NM_001567.3	681																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944752	71944752	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	279	706	0	ENST00000298229.2:c.2176G>T	p.Glu726Ter	p.E726*	ENST00000298229	NM_001567.3	726	Gag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392695	118392695	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	221	542	0	ENST00000534358.1:c.11727T>A	p.Asn3909Lys	p.N3909K	ENST00000534358	NM_005933.3	3909	aaT/aaA																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727463	66727463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	179	486	0	ENST00000307102.5:c.179T>C	p.Val60Ala	p.V60A	ENST00000307102	NM_002755.3	60	gTg/gCg																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630743	90630743	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1418478547		P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	246	600	0	ENST00000330062.3:c.743T>C	p.Met248Thr	p.M248T	ENST00000330062	NM_002168.2	248	aTg/aCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828912	72828913	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	233	659	0	ENST00000268489.5:c.7668_7669del	p.Gln2557GlufsTer21	p.Q2557Efs*21	ENST00000268489	NM_006885.3	2556	gcGCag/gcag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81946238	81946238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	212	579	1	ENST00000359376.3:c.1971G>T	p.Glu657Asp	p.E657D	ENST00000359376	NM_002661.3	657	gaG/gaT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357183	89357183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	199	669	0	ENST00000301030.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000301030	NM_001256183.1	151	Ccc/Tcc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15935795	15935795	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	136	409	0	ENST00000268712.3:c.7138T>C	p.Ser2380Pro	p.S2380P	ENST00000268712	NM_006311.3	2380	Tca/Cca																																																																														
NF1	4763	MSKCC	GRCh37	17	29553459	29553459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	182	433	0	ENST00000358273.4:c.2008G>A	p.Ala670Thr	p.A670T	ENST00000358273	NM_001042492.2	670	Gca/Aca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276833	15276833	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	241	674	0	ENST00000263388.2:c.5432A>T	p.Asp1811Val	p.D1811V	ENST00000263388	NM_000435.2	1811	gAt/gTt																																																																														
NF2	4771	MSKCC	GRCh37	22	30051596	30051596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	186	408	0	ENST00000338641.4:c.530A>G	p.Tyr177Cys	p.Y177C	ENST00000338641	NM_000268.3	177	tAt/tGt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659171	86659171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	14	226	0	ENST00000274376.6:c.1460G>A	p.Gly487Glu	p.G487E	ENST00000274376	NM_002890.2	487	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0037029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	387	675	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
MDM4	4194	MSKCC	GRCh37	1	204499930	204499930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	131	539	0	ENST00000367182.3:c.272C>T	p.Ser91Phe	p.S91F	ENST00000367182	NM_001278516.1	91	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16235839	16235839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766201418		P-0037029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	50	591	0	ENST00000375759.3:c.905G>A	p.Ser302Asn	p.S302N	ENST00000375759	NM_015001.2	302	aGt/aAt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109833	115109833	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753103762		P-0037029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	132	393	0	ENST00000257566.3:c.2045C>T	p.Ala682Val	p.A682V	ENST00000257566	NM_016569.3	682	gCc/gTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004232	29004232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763071731		P-0037029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	151	448	1	ENST00000282397.4:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000282397	NM_002019.4	354	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	11	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	15	312	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439926	56439927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	48	387	0	ENST00000407977.2:c.665dup	p.Cys222TrpfsTer37	p.C222Wfs*37	ENST00000407977		222	tgc/tgGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0037095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	148	722	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448564	89448564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1184230536		P-0037095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	67	578	0	ENST00000336596.2:c.1528C>T	p.Arg510Ter	p.R510*	ENST00000336596	NM_005233.5	510	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	37	318	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273146	115273146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	79	538	0	ENST00000438362.2:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000438362	NM_001242891.1	438	Gag/Aag																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578200	28578200	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs573326027		P-0037095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	192	523	0	ENST00000241453.7:c.2971G>A	p.Glu991Lys	p.E991K	ENST00000241453	NM_004119.2	991	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	48	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440713	56440713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779337229		P-0037098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	87	732	0	ENST00000407977.2:c.505G>A	p.Ala169Thr	p.A169T	ENST00000407977		169	Gct/Act																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38966777	38966780	+	frameshift_variant	Frame_Shift_Del	DEL	CTAA	CTAA	-			P-0037098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	18	272	0	ENST00000357387.3:c.1262_1265del	p.Val421GlufsTer6	p.V421Efs*6	ENST00000357387	NM_152756.3	421	gTTAGa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	68	773	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457309	67457309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	64	745	0	ENST00000327367.4:c.283C>A	p.Pro95Thr	p.P95T	ENST00000327367	NM_005902.3	95	Cca/Aca																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280081	66280081	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	38	433	0	ENST00000273854.3:c.1608T>A	p.Tyr536Ter	p.Y536*	ENST00000273854	NM_004439.5	536	taT/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0037100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	184	750	4	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800960	18800960	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0037100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	52	336	0	ENST00000266497.5:c.4336T>A	p.Ter1446ArgextTer4	p.*1446Rext*4	ENST00000266497		1446	Tga/Aga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678377	88678377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	164	983	0	ENST00000360948.2:c.1159G>T	p.Ala387Ser	p.A387S	ENST00000360948	NM_001012338.2	387	Gcc/Tcc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259484	89259484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	54	513	3	ENST00000336596.2:c.628G>T	p.Ala210Ser	p.A210S	ENST00000336596	NM_005233.5	210	Gct/Tct																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750461	41750461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	67	547	0	ENST00000226382.2:c.167G>A	p.Gly56Asp	p.G56D	ENST00000226382	NM_003924.3	56	gGc/gAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047216	180047216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	118	861	5	ENST00000261937.6:c.2499C>A	p.Tyr833Ter	p.Y833*	ENST00000261937	NM_182925.4	833	taC/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	53	506	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957847	1957847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200311175		P-0037104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	114	641	0	ENST00000382895.3:c.2813C>T	p.Pro938Leu	p.P938L	ENST00000382895	NM_133330.2	938	cCg/cTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604700	48604700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	84	436	0	ENST00000342988.3:c.1522G>A	p.Gly508Ser	p.G508S	ENST00000342988	NM_005359.5	508	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175170	112175191	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGGAAGCAGATTCTGCTAAT	ACAGGAAGCAGATTCTGCTAAT	-			P-0037104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	34	253	0	ENST00000257430.4:c.3881_3902del	p.Gln1294ProfsTer4	p.Q1294Pfs*4	ENST00000257430	NM_000038.5	1293	acACAGGAAGCAGATTCTGCTAAT/ac																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858566	27858566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	41	299	0	ENST00000359303.2:c.5C>G	p.Ala2Gly	p.A2G	ENST00000359303	NM_003535.2	2	gCc/gGc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0037106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	311	675	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0037106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	171	337	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs398123322		P-0037106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	168	456	0	ENST00000371953.3:c.380G>T	p.Gly127Val	p.G127V	ENST00000371953	NM_000314.4	127	gGa/gTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0037106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	136	494	2	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0037106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	266	501	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099035	27099035	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	251	500	0	ENST00000324856.7:c.3451del	p.Ser1151AlafsTer10	p.S1151Afs*10	ENST00000324856	NM_006015.4	1151	Agc/gc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468434	120468434	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0037106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	269	535	0	ENST00000256646.2:c.4006-1G>T		p.X1336_splice	ENST00000256646	NM_024408.3	1336																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711969	89711969	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	153	482	0	ENST00000371953.3:c.587A>C	p.His196Pro	p.H196P	ENST00000371953	NM_000314.4	196	cAc/cCc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466036	69466038	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0037106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	336	815	0	ENST00000227507.2:c.875_877del	p.Asp292del	p.D292del	ENST00000227507	NM_053056.2	292	GAC/-																																																																														
POLE	5426	MSKCC	GRCh37	12	133252751	133252751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	264	535	1	ENST00000320574.5:c.949A>G	p.Ile317Val	p.I317V	ENST00000320574	NM_006231.2	317	Att/Gtt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67670670	67670670	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	275	467	0	ENST00000264010.4:c.1915C>T	p.Gln639Ter	p.Q639*	ENST00000264010	NM_006565.3	639	Cag/Tag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40481781	40481781	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	179	381	0	ENST00000264657.5:c.1123G>C	p.Val375Leu	p.V375L	ENST00000264657	NM_139276.2	375	Gtt/Ctt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	592	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0037111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	41	235	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0037111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	520	694	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593469	48593470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTTG			P-0037111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	191	393	0	ENST00000342988.3:c.1221_1225dup	p.Val409AlafsTer8	p.V409Afs*8	ENST00000342988	NM_005359.5	407	gtc/gtCTTTGc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267350	41267350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0037111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	113	205	0	ENST00000349496.5:c.934A>C	p.Lys312Gln	p.K312Q	ENST00000349496	NM_001904.3	312	Aag/Cag																																																																														
APC	324	MSKCC	GRCh37	5	112162803	112162803	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0037111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	51	318	0	ENST00000257430.4:c.1409-2del		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																															
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886926322		P-0037123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	168	414	0	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473719	67473719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	290	606	0	ENST00000327367.4:c.799G>T	p.Glu267Ter	p.E267*	ENST00000327367	NM_005902.3	267	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578289	7578289	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0037123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	228	619	0	ENST00000269305.4:c.560del	p.Gly187ValfsTer60	p.G187Vfs*60	ENST00000269305	NM_001126112.2	187	gGt/gt																																																																														
ATM	472	MSKCC	GRCh37	11	108205820	108205820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	160	397	0	ENST00000278616.4:c.8135G>A	p.Arg2712Lys	p.R2712K	ENST00000278616	NM_000051.3	2712	aGg/aAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	309	555	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935634	13935634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	85	506	1	ENST00000405192.2:c.1222C>T	p.Arg408Cys	p.R408C	ENST00000405192	NM_001163147.1	408	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25368390	25368390	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	51	462	0	ENST00000256078.4:c.555del	p.Lys185AsnfsTer4	p.K185Nfs*4	ENST00000256078	NM_033360.2	185	aaA/aa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	97	893	2	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																														
TP63	8626	MSKCC	GRCh37	3	189526061	189526061	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	154	375	0	ENST00000264731.3:c.325C>T	p.Pro109Ser	p.P109S	ENST00000264731	NM_003722.4	109	Cca/Tca																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	16	147	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148512041	148512041	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	38	406	0	ENST00000320356.2:c.1637A>T	p.Asn546Ile	p.N546I	ENST00000320356	NM_004456.4	546	aAt/aTt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029511	16029511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	205	500	0	ENST00000268712.3:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000268712	NM_006311.3	507	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521544	8521544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	162	420	0	ENST00000356435.5:c.694C>T	p.Arg232Cys	p.R232C	ENST00000356435		232	Cgc/Tgc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99193602	99193602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1271977013		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	44	399	0	ENST00000074304.5:c.2797C>T	p.Arg933Cys	p.R933C	ENST00000074304	NM_001134224.1	933	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492897	8492897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs544419494		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	99	620	0	ENST00000356435.5:c.2432G>A	p.Arg811His	p.R811H	ENST00000356435		811	cGc/cAc																																																																														
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	154	722	5	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	236	665	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444236	49444238	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	170	1002	1	ENST00000301067.7:c.3133_3135del	p.Pro1045del	p.P1045del	ENST00000301067	NM_003482.3	1045	CCT/-																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	36	523	0	ENST00000282397.4:c.166del	p.Glu56LysfsTer12	p.E56Kfs*12	ENST00000282397	NM_002019.4	56	Gaa/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	74	850	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494665	2494665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779181014		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	112	701	0	ENST00000355716.4:c.805G>A	p.Val269Met	p.V269M	ENST00000355716	NM_003820.2	269	Gtg/Atg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937983	36937983	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	122	904	0	ENST00000361632.4:c.853del	p.Leu285SerfsTer43	p.L285Sfs*43	ENST00000361632		285	Ctc/tc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910259	50910259	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1043752384		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	210	682	1	ENST00000440232.2:c.1514G>A	p.Arg505His	p.R505H	ENST00000440232	NM_002691.3	505	cGc/cAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	151	572	4	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164655	36164655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	89	766	0	ENST00000300305.3:c.1220A>G	p.Tyr407Cys	p.Y407C	ENST00000300305		407	tAc/tGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879229	151879229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763438739		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	200	588	0	ENST00000262189.6:c.5716C>T	p.Arg1906Ter	p.R1906*	ENST00000262189	NM_170606.2	1906	Cga/Tga																																																																														
WHSC1	0	MSKCC	GRCh37	4	1956968	1956968	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143360610		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	89	651	3	ENST00000382895.3:c.2419G>A	p.Ala807Thr	p.A807T	ENST00000382895	NM_133330.2	807	Gcc/Acc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5218452	5218452	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753143589		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	85	791	0	ENST00000357368.4:c.4027C>T	p.Arg1343Cys	p.R1343C	ENST00000357368	NM_002850.3	1343	Cgc/Tgc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004348	150004348	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766836005		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	176	579	0	ENST00000253339.5:c.1877G>A	p.Arg626Gln	p.R626Q	ENST00000253339		626	cGa/cAa																																																																														
BCL6	604	MSKCC	GRCh37	3	187444617	187444617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs545063119		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	289	622	1	ENST00000232014.4:c.1610C>T	p.Thr537Met	p.T537M	ENST00000232014	NM_001130845.1	537	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629493	187629493	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	202	753	0	ENST00000441802.2:c.1489T>C	p.Tyr497His	p.Y497H	ENST00000441802	NM_005245.3	497	Tac/Cac																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707981	43707981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	292	854	0	ENST00000382044.4:c.4900C>T	p.Arg1634Trp	p.R1634W	ENST00000382044	NM_001141980.1	1634	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023190	27023190	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	49	144	0	ENST00000324856.7:c.296A>G	p.Asp99Gly	p.D99G	ENST00000324856	NM_006015.4	99	gAc/gGc																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228613004	228613004	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375918041		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	160	427	0	ENST00000366696.1:c.23C>T	p.Ala8Val	p.A8V	ENST00000366696	NM_003493.2	8	gCg/gTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70404659	70404659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	67	567	0	ENST00000373644.4:c.2173G>T	p.Asp725Tyr	p.D725Y	ENST00000373644	NM_030625.2	725	Gat/Tat																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137854	64137854	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs755881487		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	344	1069	1	ENST00000334205.4:c.1955G>A	p.Arg652Gln	p.R652Q	ENST00000334205	NM_003942.2	652	cGa/cAa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94163079	94163079	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	56	514	0	ENST00000323929.3:c.2068G>A	p.Glu690Lys	p.E690K	ENST00000323929	NM_005591.3	690	Gag/Aag																																																																														
CBL	867	MSKCC	GRCh37	11	119156155	119156155	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	39	620	0	ENST00000264033.4:c.1820A>T	p.Asp607Val	p.D607V	ENST00000264033	NM_005188.3	607	gAt/gTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427986	49427986	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	73	772	0	ENST00000301067.7:c.10604A>G	p.His3535Arg	p.H3535R	ENST00000301067	NM_003482.3	3535	cAc/cGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445668	49445668	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	117	1008	0	ENST00000301067.7:c.1798T>A	p.Phe600Ile	p.F600I	ENST00000301067	NM_003482.3	600	Ttc/Atc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864151	57864151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	219	581	0	ENST00000228682.2:c.1628G>A	p.Ser543Asn	p.S543N	ENST00000228682	NM_005269.2	543	aGc/aAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864787	57864787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	61	663	0	ENST00000228682.2:c.2264C>A	p.Pro755His	p.P755H	ENST00000228682	NM_005269.2	755	cCt/cAt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888304	112888304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	145	494	0	ENST00000351677.2:c.320C>A	p.Pro107His	p.P107H	ENST00000351677	NM_002834.3	107	cCt/cAt																																																																														
RB1	5925	MSKCC	GRCh37	13	49050876	49050876	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	42	318	0	ENST00000267163.4:c.2560A>T	p.Asn854Tyr	p.N854Y	ENST00000267163	NM_000321.2	854	Aac/Tac																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724596	43724597	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	370	1051	0	ENST00000382044.4:c.3470_3471del	p.Ile1157ArgfsTer27	p.I1157Rfs*27	ENST00000382044	NM_001141980.1	1157	aTA/a																																																																														
CD276	80381	MSKCC	GRCh37	15	73994608	73994608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	134	923	0	ENST00000318443.5:c.92T>C	p.Val31Ala	p.V31A	ENST00000318443	NM_001024736.1	31	gTc/gCc																																																																														
NF1	4763	MSKCC	GRCh37	17	29676143	29676143	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	42	345	0	ENST00000358273.4:c.7195A>G	p.Arg2399Gly	p.R2399G	ENST00000358273	NM_001042492.2	2399	Agg/Ggg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40485736	40485736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776115471		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	190	544	0	ENST00000264657.5:c.1004G>A	p.Arg335Gln	p.R335Q	ENST00000264657	NM_139276.2	335	cGg/cAg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18966793	18966793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	94	784	0	ENST00000262803.5:c.1604A>G	p.His535Arg	p.H535R	ENST00000262803	NM_002911.3	535	cAc/cGc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30312916	30312916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146040933		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	85	654	0	ENST00000262643.3:c.719G>A	p.Arg240His	p.R240H	ENST00000262643	NM_001238.2	240	cGt/cAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89156917	89156917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	91	631	0	ENST00000336596.2:c.19A>G	p.Ile7Val	p.I7V	ENST00000336596	NM_005233.5	7	Atc/Gtc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177024	56177024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	168	511	0	ENST00000399503.3:c.2294T>C	p.Leu765Ser	p.L765S	ENST00000399503	NM_005921.1	765	tTg/tCg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671558	30671558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	77	775	0	ENST00000376406.3:c.5402del	p.Pro1801ArgfsTer15	p.P1801Rfs*15	ENST00000376406	NM_014641.2	1801	cCg/cg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405904	157405904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	65	501	0	ENST00000346085.5:c.2146G>T	p.Ala716Ser	p.A716S	ENST00000346085	NM_020732.3	716	Gcg/Tcg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38189012	38189012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	99	973	1	ENST00000317025.8:c.1002A>T	p.Lys334Asn	p.K334N	ENST00000317025	NM_023034.1	334	aaA/aaT																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956762	68956762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	61	703	1	ENST00000288368.4:c.880T>C	p.Tyr294His	p.Y294H	ENST00000288368	NM_024870.2	294	Tac/Cac																																																																														
AGO2	27161	MSKCC	GRCh37	8	141569579	141569582	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	215	623	0	ENST00000220592.5:c.702_705del	p.Cys235LysfsTer15	p.C235Kfs*15	ENST00000220592	NM_012154.3	234	gtTTGT/gt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738400	145738400	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781636798		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	90	807	0	ENST00000428558.2:c.2585C>T	p.Ser862Leu	p.S862L	ENST00000428558	NM_004260.3	862	tCg/tTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524963	8524963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	43	346	1	ENST00000356435.5:c.641G>A	p.Gly214Asp	p.G214D	ENST00000356435		214	gGc/gAc																																																																														
FANCC	2176	MSKCC	GRCh37	9	97912266	97912266	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373270404		P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	154	444	1	ENST00000289081.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000289081	NM_000136.2	209	Cgt/Tgt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932791	39932791	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	356	494	0	ENST00000378444.4:c.1808C>G	p.Ala603Gly	p.A603G	ENST00000378444	NM_001123385.1	603	gCc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577152	7577154	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACC	ACC	-			P-0037128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	177	536	0	ENST00000269305.4:c.784_786del	p.Gly262del	p.G262del	ENST00000269305	NM_001126112.2	262	GGT/-																																																																														
BRAF	673	MSKCC	GRCh37	7	140453092	140453092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	42	315	0	ENST00000288602.6:c.1843G>A	p.Gly615Arg	p.G615R	ENST00000288602	NM_004333.4	615	Gga/Aga																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932106	36932111	+	frameshift_variant	Frame_Shift_Del	DEL	TCATAG	TCATAG	CT			P-0037128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	58	484	1	ENST00000361632.4:c.2358_2363delinsAG	p.Tyr787GlyfsTer14	p.Y787Gfs*14	ENST00000361632		786	tcCTATGAg/tcAGg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215907	41215907	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs80357418		P-0037128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	161	449	0	ENST00000357654.3:c.5136G>A	p.Trp1712Ter	p.W1712*	ENST00000357654	NM_007294.3	1712	tgG/tgA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480483	89480483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	12	332	1	ENST00000336596.2:c.2320G>A	p.Asp774Asn	p.D774N	ENST00000336596	NM_005233.5	774	Gac/Aac																																																																														
TEK	7010	MSKCC	GRCh37	9	27190556	27190556	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373235916		P-0037128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	63	638	1	ENST00000380036.4:c.1357G>A	p.Val453Met	p.V453M	ENST00000380036	NM_000459.3	453	Gtg/Atg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643261	38643261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	33	516	0	ENST00000299084.4:c.731A>C	p.Glu244Ala	p.E244A	ENST00000299084	NM_152594.2	244	gAg/gCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	247	239	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0037170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	134	234	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133244133	133244133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759398253		P-0037170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	247	409	1	ENST00000320574.5:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000320574	NM_006231.2	759	Cgt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16247378	16247378	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772371033		P-0037170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	69	156	1	ENST00000375759.3:c.1649G>A	p.Arg550His	p.R550H	ENST00000375759	NM_015001.2	550	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106865	27106882	+	inframe_deletion	In_Frame_Del	DEL	AGAACCCGGTGTGCCGGG	AGAACCCGGTGTGCCGGG	-			P-0037170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	167	443	0	ENST00000324856.7:c.6479_6496del	p.Asn2160_Glu2165del	p.N2160_E2165del	ENST00000324856	NM_006015.4	2159	aAGAACCCGGTGTGCCGGGag/aag																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022937	33022937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	170	284	0	ENST00000300177.4:c.46G>T	p.Gly16Trp	p.G16W	ENST00000300177	NM_001191322.1	16	Ggg/Tgg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266828	18266828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	322	563	0	ENST00000222254.8:c.139G>T	p.Gly47Cys	p.G47C	ENST00000222254	NM_005027.3	47	Ggc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211857	36211881	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCCGTGTCATCAAGACACCCCGG	CTCCCGTGTCATCAAGACACCCCGG	-			P-0037170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	358	848	0	ENST00000222270.7:c.1609_1633del	p.Ser537AspfsTer60	p.S537Dfs*60	ENST00000222270	NM_014727.1	536	tcCTCCCGTGTCATCAAGACACCCCGG/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	177	620	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32171974	32171974	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	45	546	0	ENST00000375023.3:c.3058A>T	p.Thr1020Ser	p.T1020S	ENST00000375023	NM_004557.3	1020	Act/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	163	575	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	58	529	1	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
AXL	558	MSKCC	GRCh37	19	41743930	41743930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141302305		P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	221	732	0	ENST00000301178.4:c.865G>A	p.Val289Met	p.V289M	ENST00000301178	NM_021913.4	289	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	90	463	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	155	489	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112174241	112174241	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	53	410	1	ENST00000257430.4:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000257430	NM_000038.5	984	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175657	112175657	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	51	347	0	ENST00000257430.4:c.4366A>T	p.Lys1456Ter	p.K1456*	ENST00000257430	NM_000038.5	1456	Aaa/Taa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138137	64138137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	260	630	0	ENST00000334205.4:c.2060C>T	p.Thr687Met	p.T687M	ENST00000334205	NM_003942.2	687	aCg/aTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157488275	157488275	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377351099		P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	124	449	1	ENST00000346085.5:c.2981C>T	p.Ala994Val	p.A994V	ENST00000346085	NM_020732.3	994	gCg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132863	152132865	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0037194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	136	415	0	ENST00000262189.6:c.7_9del	p.Ser3del	p.S3del	ENST00000262189	NM_170606.2	3	TCG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0037195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	533	790	6	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
APC	324	MSKCC	GRCh37	5	112173429	112173429	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	164	419	0	ENST00000257430.4:c.2138C>A	p.Ser713Ter	p.S713*	ENST00000257430	NM_000038.5	713	tCa/tAa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982395	201982395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	172	771	0	ENST00000359651.3:c.774G>A	p.Trp258Ter	p.W258*	ENST00000359651		258	tgG/tgA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133603	55133603	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	97	561	1	ENST00000257290.5:c.907A>C	p.Lys303Gln	p.K303Q	ENST00000257290	NM_006206.4	303	Aag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0037220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	157	605	16	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0037220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	321	531	12	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0037220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	79	455	6	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0037220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	79	284	1	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473708	67473708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	271	612	13	ENST00000327367.4:c.788C>A	p.Pro263His	p.P263H	ENST00000327367	NM_005902.3	263	cCc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11316117	11316117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	72	610	8	ENST00000361445.4:c.637C>T	p.Leu213Phe	p.L213F	ENST00000361445	NM_004958.3	213	Ctt/Ttt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45422902	45422903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AACAC			P-0037220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	98	417	5	ENST00000262160.6:c.221_225dup	p.Thr76ValfsTer14	p.T76Vfs*14	ENST00000262160	NM_005901.5	75	-/GTGTT																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46602909	46602909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	151	768	18	ENST00000263734.3:c.967G>T	p.Gly323Trp	p.G323W	ENST00000263734	NM_001430.4	323	Ggg/Tgg																																																																														
KDR	3791	MSKCC	GRCh37	4	55961048	55961048	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	190	691	9	ENST00000263923.4:c.2892C>G	p.Asp964Glu	p.D964E	ENST00000263923	NM_002253.2	964	gaC/gaG																																																																														
SMO	6608	MSKCC	GRCh37	7	128852008	128852008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	167	788	11	ENST00000249373.3:c.2080C>A	p.Pro694Thr	p.P694T	ENST00000249373	NM_005631.4	694	Cct/Act																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127951982	127951982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	161	621	9	ENST00000373547.4:c.16C>A	p.Leu6Met	p.L6M	ENST00000373547	NM_002721.4	6	Ctg/Atg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139414015	139414015	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0037220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	178	531	14	ENST00000277541.6:c.745T>G	p.Phe249Val	p.F249V	ENST00000277541	NM_017617.3	249	Ttc/Gtc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	129	403	0	ENST00000324856.7:c.3977dup	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725042	89725042	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs1085308041		P-0037240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	33	173	0	ENST00000371953.3:c.1027-2A>G		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0037240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	55	372	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	65	559	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645156	67645156	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	68	527	2	ENST00000264010.4:c.421G>T	p.Glu141Ter	p.E141*	ENST00000264010	NM_006565.3	141	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685269	89685269	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs786203847		P-0037240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	32	224	0	ENST00000371953.3:c.165-1G>A		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410988	31410988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	75	435	0	ENST00000344624.3:c.3532C>G	p.Arg1178Gly	p.R1178G	ENST00000344624		1178	Cga/Gga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591078	67591110	+	inframe_deletion	In_Frame_Del	DEL	AGAAATTGACAAACGTATGAACAGCATTAAACC	AGAAATTGACAAACGTATGAACAGCATTAAACC	-			P-0037240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	40	211	0	ENST00000274335.5:c.1674_1706del	p.Glu558_Pro568del	p.E558_P568del	ENST00000274335		557	cgAGAAATTGACAAACGTATGAACAGCATTAAACCa/cga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593236	67593247	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTAGGGTGGACG	CTAGGGTGGACG	-			P-0037240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	36	214	0	ENST00000274335.5:c.1986-4_1993del		p.X662_splice	ENST00000274335		662																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	164	636	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	48878115	48878117	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-	rs760927237		P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	11	89	0	ENST00000267163.4:c.78_80del	p.Pro29del	p.P29del	ENST00000267163	NM_000321.2	23	CCG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578217	7578218	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	353	555	0	ENST00000269305.4:c.631_632del	p.Thr211PhefsTer4	p.T211Ffs*4	ENST00000269305	NM_001126112.2	211	ACt/t																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400909	72400909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	72	424	0	ENST00000357731.5:c.262G>T	p.Asp88Tyr	p.D88Y	ENST00000357731	NM_173808.2	88	Gat/Tat																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575696	48575696	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	72	562	0	ENST00000342988.3:c.454+2T>C		p.X152_splice	ENST00000342988	NM_005359.5	152																																																																															
APC	324	MSKCC	GRCh37	5	112175511	112175511	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	195	369	0	ENST00000257430.4:c.4220del	p.Ser1407MetfsTer8	p.S1407Mfs*8	ENST00000257430	NM_000038.5	1407	aGt/at																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170270	32170270	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187627302		P-0037242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	183	631	2	ENST00000375023.3:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000375023	NM_004557.3	1113	cGc/cAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	45	293	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	28	159	0				ENST00000310581	NM_198253.2																																																																																
HGF	3082	MSKCC	GRCh37	7	81381541	81381541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	27	285	0	ENST00000222390.5:c.520G>A	p.Glu174Lys	p.E174K	ENST00000222390	NM_000601.4	174	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	42058361	42058361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	43	314	0	ENST00000219905.7:c.8081C>T	p.Ser2694Phe	p.S2694F	ENST00000219905	NM_001164273.1	2694	tCc/tTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121909229		P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	26	416	0	ENST00000371953.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000371953	NM_000314.4	130	cGa/cTa																																																																														
RB1	5925	MSKCC	GRCh37	13	49027128	49027128	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs794727199		P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	28	278	0	ENST00000267163.4:c.1696-1G>A		p.X566_splice	ENST00000267163	NM_000321.2	566																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10260146	10260146	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751754286		P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	60	505	0	ENST00000340748.4:c.2521G>A	p.Glu841Lys	p.E841K	ENST00000340748		841	Gaa/Aaa																																																																														
LYN	4067	MSKCC	GRCh37	8	56912075	56912075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	66	562	0	ENST00000519728.1:c.1303G>A	p.Glu435Lys	p.E435K	ENST00000519728	NM_002350.3	435	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484270	8484270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867884876		P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	38	513	0	ENST00000356435.5:c.3262C>T	p.Arg1088Cys	p.R1088C	ENST00000356435		1088	Cgt/Tgt																																																																														
TP63	8626	MSKCC	GRCh37	3	189612211	189612211	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	60	434	1	ENST00000264731.3:c.1963C>T	p.Arg655Ter	p.R655*	ENST00000264731	NM_003722.4	655	Cga/Tga																																																																														
TEK	7010	MSKCC	GRCh37	9	27202911	27202911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	38	461	0	ENST00000380036.4:c.2003C>T	p.Ser668Phe	p.S668F	ENST00000380036	NM_000459.3	668	tCt/tTt																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494688	2494688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	43	507	1	ENST00000355716.4:c.828C>A	p.Phe276Leu	p.F276L	ENST00000355716	NM_003820.2	276	ttC/ttA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11300515	11300515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	47	767	0	ENST00000361445.4:c.1631C>T	p.Ser544Phe	p.S544F	ENST00000361445	NM_004958.3	544	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259673	16259673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	74	429	0	ENST00000375759.3:c.6938C>T	p.Pro2313Leu	p.P2313L	ENST00000375759	NM_015001.2	2313	cCa/cTa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933758	36933758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	42	559	0	ENST00000361632.4:c.1641G>A	p.Trp547Ter	p.W547*	ENST00000361632		547	tgG/tgA																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156836701	156836701	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	55	647	0	ENST00000524377.1:c.360-1G>A		p.X120_splice	ENST00000524377	NM_002529.3	120																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845973	156845973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	47	532	1	ENST00000524377.1:c.1603G>A	p.Glu535Lys	p.E535K	ENST00000524377	NM_002529.3	535	Gag/Aag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134332	2134333	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	57	714	0	ENST00000219476.3:c.4109_4110delinsTT	p.Pro1370Leu	p.P1370L	ENST00000219476	NM_000548.3	1370	cCC/cTT																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58678043	58678043	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1456766576		P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	40	167	0	ENST00000305921.3:c.268C>T	p.Arg90Cys	p.R90C	ENST00000305921	NM_003620.3	90	Cgc/Tgc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561213	9561213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	57	423	1	ENST00000353224.5:c.569C>T	p.Ser190Phe	p.S190F	ENST00000353224	NM_177990.2	190	tCc/tTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266105	41266110	+	inframe_deletion	In_Frame_Del	DEL	AATCCA	AATCCA	-			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	29	252	0	ENST00000349496.5:c.102_107del	p.Ile35_His36del	p.I35_H36del	ENST00000349496	NM_001904.3	34	ggAATCCAt/ggt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638630	176638630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	105	543	0	ENST00000439151.2:c.3230C>T	p.Ser1077Leu	p.S1077L	ENST00000439151	NM_022455.4	1077	tCa/tTa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816819	32816839	+	frameshift_variant	Frame_Shift_Del	DEL	CCACTGCTTACAGCCCCACTG	CCACTGCTTACAGCCCCACTG	ACTT			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	95	569	1	ENST00000354258.4:c.1485_1505delinsAAGT	p.Gly497GlufsTer38	p.G497Efs*38	ENST00000354258	NM_000593.5	495	acCAGTGGGGCTGTAAGCAGTGGg/acAAGTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117700271	117700271	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs764329833		P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	22	402	0	ENST00000368508.3:c.2548C>T	p.Gln850Ter	p.Q850*	ENST00000368508	NM_002944.2	850	Caa/Taa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522431	157522431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	48	574	0	ENST00000346085.5:c.4703C>T	p.Ser1568Phe	p.S1568F	ENST00000346085	NM_020732.3	1568	tCt/tTt																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207611	29207611	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1474424761		P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	29	400	0	ENST00000240100.2:c.185T>A	p.Leu62Gln	p.L62Q	ENST00000240100	NM_001394.6	62	cTa/cAa																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814887	139814887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	34	601	1	ENST00000247668.2:c.880G>A	p.Glu294Lys	p.E294K	ENST00000247668	NM_021138.3	294	Gag/Aag																																																																														
STK19	8859	MSKCC	GRCh37	6	31940120	31940123	+	missense_variant	Missense_Mutation	ONP	GAAG	GAAG	AAAT			P-0037309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	141	679	0	ENST00000375331.2:c.262_265delinsAAAT	p.Glu88_Asp89delinsLysTyr	p.E88_D89delinsKY	ENST00000375331	NM_004197.1	88	GAAGac/AAATac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	84	372	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	76	279	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44520605	44520605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	61	193	0	ENST00000291552.4:c.157C>T	p.Arg53Cys	p.R53C	ENST00000291552	NM_006758.2	53	Cgt/Tgt																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910331	29910331	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	75	435	0	ENST00000376809.5:c.1A>T	p.Met1?	p.M1?	ENST00000376809	NM_002116.7	1	Atg/Ttg																																																																														
APC	324	MSKCC	GRCh37	5	112174236	112174236	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	190	263	0	ENST00000257430.4:c.2945C>A	p.Ser982Ter	p.S982*	ENST00000257430	NM_000038.5	982	tCg/tAg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114901076	114901076	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1247712690		P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	75	299	0	ENST00000543371.1:c.685+1G>A		p.X229_splice	ENST00000543371	NM_001198531.1	229																																																																															
WT1	7490	MSKCC	GRCh37	11	32456321	32456321	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756501972		P-0037377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	189	447	0	ENST00000332351.3:c.571G>A	p.Gly191Ser	p.G191S	ENST00000332351	NM_024426.4	191	Ggc/Agc																																																																														
MET	4233	MSKCC	GRCh37	7	116418947	116418947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	73	302	0	ENST00000397752.3:c.3458C>T	p.Pro1153Leu	p.P1153L	ENST00000397752	NM_000245.2	1153	cCg/cTg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625186	69625186	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547457011		P-0037421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	122	746	0	ENST00000334134.2:c.607G>A	p.Gly203Ser	p.G203S	ENST00000334134	NM_005247.2	203	Ggt/Agt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448690	49448690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	75	406	1	ENST00000301067.7:c.169G>A	p.Asp57Asn	p.D57N	ENST00000301067	NM_003482.3	57	Gac/Aac																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618688	37618688	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	301	423	0	ENST00000447079.4:c.365del	p.Leu122TyrfsTer2	p.L122Yfs*2	ENST00000447079	NM_015083.1	122	Tta/ta																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032042	26032042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	85	355	0	ENST00000244661.2:c.247C>G	p.Leu83Val	p.L83V	ENST00000244661	NM_003537.3	83	Ctt/Gtt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32900649	32900650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0037423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	29	519	0	ENST00000380152.3:c.530_531insGA	p.His179AsnfsTer7	p.H179Nfs*7	ENST00000380152		177	cca/ccGAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467810	50467810	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs765032404		P-0037423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	42	460	0	ENST00000331340.3:c.1045C>A	p.Gln349Lys	p.Q349K	ENST00000331340	NM_006060.4	349	Cag/Aag																																																																														
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1733	364	940	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061312	38061312	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1329067081		P-0037427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1640	238	780	0	ENST00000250448.2:c.677A>G	p.Asp226Gly	p.D226G	ENST00000250448	NM_004496.3	226	gAc/gGc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039225	49039225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	15	508	0	ENST00000267163.4:c.2303T>C	p.Ile768Thr	p.I768T	ENST00000267163	NM_000321.2	768	aTt/aCt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061164	38061193	+	inframe_deletion	In_Frame_Del	DEL	GCCGGCCCCCGGCTGCTTCTCGCACTTGAA	GCCGGCCCCCGGCTGCTTCTCGCACTTGAA	-			P-0037427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	75	322	0	ENST00000250448.2:c.796_825del	p.Phe266_Gly275del	p.F266_G275del	ENST00000250448	NM_004496.3	266	TTCAAGTGCGAGAAGCAGCCGGGGGCCGGC/-																																																																														
EP300	2033	MSKCC	GRCh37	22	41574517	41574517	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	125	751	0	ENST00000263253.7:c.6802C>T	p.Gln2268Ter	p.Q2268*	ENST00000263253	NM_001429.3	2268	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	135	110	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0037451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	520	590	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426753	212426753	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	80	481	0	ENST00000342788.4:c.2362C>A	p.Leu788Met	p.L788M	ENST00000342788	NM_005235.2	788	Ctg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112154934	112154934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs878853416		P-0037451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	162	559	1	ENST00000257430.4:c.1205G>A	p.Arg402His	p.R402H	ENST00000257430	NM_000038.5	402	cGt/cAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662453	117662453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	152	417	0	ENST00000368508.3:c.4924G>A	p.Glu1642Lys	p.E1642K	ENST00000368508	NM_002944.2	1642	Gaa/Aaa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390806	139390806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767435492		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	231	561	0	ENST00000277541.6:c.7385C>T	p.Pro2462Leu	p.P2462L	ENST00000277541	NM_017617.3	2462	cCc/cTc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037486	12037486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	110	299	0	ENST00000396373.4:c.1117C>T	p.Pro373Ser	p.P373S	ENST00000396373	NM_001987.4	373	Ccc/Tcc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89825073	89825073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	193	357	0	ENST00000389301.3:c.2893C>T	p.Pro965Ser	p.P965S	ENST00000389301	NM_000135.2	965	Cct/Tct																																																																														
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520017		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	205	526	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129884	55129884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs574683248		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	215	521	1	ENST00000257290.5:c.418G>A	p.Val140Met	p.V140M	ENST00000257290	NM_006206.4	140	Gtg/Atg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686868	117686868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	108	247	0	ENST00000368508.3:c.2849C>T	p.Ser950Phe	p.S950F	ENST00000368508	NM_002944.2	950	tCt/tTt																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348912	11348912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765480579		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	102	228	0	ENST00000332029.2:c.424G>A	p.Glu142Lys	p.E142K	ENST00000332029	NM_003745.1	142	Gag/Aag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118782	115118782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	198	400	0	ENST00000257566.3:c.559C>T	p.His187Tyr	p.H187Y	ENST00000257566	NM_016569.3	187	Cac/Tac																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514110	69514110	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1264857484		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	199	466	0	ENST00000294312.3:c.571C>T	p.Pro191Ser	p.P191S	ENST00000294312	NM_005117.2	191	Ccc/Tcc																																																																														
RB1	5925	MSKCC	GRCh37	13	49027128	49027128	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs794727199		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	107	258	0	ENST00000267163.4:c.1696-1G>A		p.X566_splice	ENST00000267163	NM_000321.2	566																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467924	50467924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	101	297	0	ENST00000331340.3:c.1159G>C	p.Glu387Gln	p.E387Q	ENST00000331340	NM_006060.4	387	Gag/Cag																																																																														
CIC	23152	MSKCC	GRCh37	19	42795364	42795364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	52	402	1	ENST00000575354.2:c.2444C>T	p.Ala815Val	p.A815V	ENST00000575354	NM_015125.3	815	gCc/gTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964193	28964193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	133	292	0	ENST00000282397.4:c.1709G>A	p.Gly570Glu	p.G570E	ENST00000282397	NM_002019.4	570	gGa/gAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29560043	29560043	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs868450405		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	224	208	0	ENST00000358273.4:c.3520C>T	p.Gln1174Ter	p.Q1174*	ENST00000358273	NM_001042492.2	1174	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140439656	140439656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	109	279	0	ENST00000288602.6:c.2083G>C	p.Glu695Gln	p.E695Q	ENST00000288602	NM_004333.4	695	Gag/Cag																																																																														
NUP93	9688	MSKCC	GRCh37	16	56864462	56864462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	214	467	0	ENST00000308159.5:c.950C>T	p.Pro317Leu	p.P317L	ENST00000308159	NM_014669.4	317	cCt/cTt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533950	63533950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	90	225	0	ENST00000307078.5:c.1204G>A	p.Glu402Lys	p.E402K	ENST00000307078	NM_004655.3	402	Gaa/Aaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435092	56435092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	378	494	0	ENST00000407977.2:c.2045C>T	p.Pro682Leu	p.P682L	ENST00000407977		682	cCc/cTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93968002	93968002	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs766856886		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	123	301	0	ENST00000369303.4:c.1925G>A	p.Gly642Glu	p.G642E	ENST00000369303	NM_004440.3	642	gGa/gAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627698	37627698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	420	529	0	ENST00000447079.4:c.1613C>T	p.Pro538Leu	p.P538L	ENST00000447079	NM_015083.1	538	cCt/cTt																																																																														
INSR	3643	MSKCC	GRCh37	19	7267442	7267442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	366	432	0	ENST00000302850.5:c.566C>T	p.Thr189Ile	p.T189I	ENST00000302850	NM_000208.2	189	aCc/aTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246274	41246274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1260879887		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	394	499	0	ENST00000357654.3:c.1274C>T	p.Ser425Phe	p.S425F	ENST00000357654	NM_007294.3	425	tCt/tTt																																																																														
RET	5979	MSKCC	GRCh37	10	43609036	43609036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	145	468	0	ENST00000355710.3:c.1792G>A	p.Glu598Lys	p.E598K	ENST00000355710	NM_020975.4	598	Gag/Aag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054879	5054879	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	86	274	0	ENST00000381652.3:c.931G>T	p.Glu311Ter	p.E311*	ENST00000381652	NM_004972.3	311	Gaa/Taa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535355	66535355	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	120	339	2	ENST00000273854.3:c.106C>T	p.Arg36Ter	p.R36*	ENST00000273854	NM_004439.5	36	Cga/Tga																																																																														
PAK7	0	MSKCC	GRCh37	20	9523340	9523340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	140	360	0	ENST00000353224.5:c.1897G>A	p.Val633Met	p.V633M	ENST00000353224	NM_177990.2	633	Gtg/Atg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213999	36213999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774513604		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	79	631	0	ENST00000222270.7:c.2825G>A	p.Gly942Glu	p.G942E	ENST00000222270	NM_014727.1	942	gGa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	109	158	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27097809	27097809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	127	279	0	ENST00000324856.7:c.3398C>T	p.Pro1133Leu	p.P1133L	ENST00000324856	NM_006015.4	1133	cCc/cTc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805086	89805086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	191	416	0	ENST00000389301.3:c.4291G>A	p.Glu1431Lys	p.E1431K	ENST00000389301	NM_000135.2	1431	Gag/Aag																																																																														
CARM1	10498	MSKCC	GRCh37	19	11022897	11022897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	308	641	0	ENST00000327064.4:c.596C>T	p.Ser199Leu	p.S199L	ENST00000327064	NM_199141.1	199	tCg/tTg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379775	17379775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	81	658	0	ENST00000359435.4:c.160G>A	p.Glu54Lys	p.E54K	ENST00000359435	NM_001033549.1	54	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858295	9858295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	164	361	0	ENST00000330684.3:c.3106G>A	p.Glu1036Lys	p.E1036K	ENST00000330684	NM_001134407.1	1036	Gag/Aag																																																																														
ACVR1	90	MSKCC	GRCh37	2	158595041	158595041	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1262652803		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	121	327	0	ENST00000263640.3:c.1306C>T	p.Pro436Ser	p.P436S	ENST00000263640	NM_001105.4	436	Ccc/Tcc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11264623	11264623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	244	386	0	ENST00000361445.4:c.3939G>T	p.Met1313Ile	p.M1313I	ENST00000361445	NM_004958.3	1313	atG/atT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256184	16256184	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	209	441	0	ENST00000375759.3:c.3449C>G	p.Ser1150Ter	p.S1150*	ENST00000375759	NM_015001.2	1150	tCa/tGa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262177	16262177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	64	211	0	ENST00000375759.3:c.9442C>T	p.Pro3148Ser	p.P3148S	ENST00000375759	NM_015001.2	3148	Cct/Tct																																																																														
ID3	3399	MSKCC	GRCh37	1	23885815	23885815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	197	306	0	ENST00000374561.5:c.103G>A	p.Glu35Lys	p.E35K	ENST00000374561	NM_002167.4	35	Gag/Aag																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058620	72058620	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	227	363	0	ENST00000357731.5:c.820C>T	p.Gln274Ter	p.Q274*	ENST00000357731	NM_173808.2	274	Caa/Taa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724433	162724433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	148	418	0	ENST00000367921.3:c.205G>A	p.Asp69Asn	p.D69N	ENST00000367921	NM_006182.2	69	Gat/Aat																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100561	8100561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	193	480	0	ENST00000346208.3:c.535G>A	p.Asp179Asn	p.D179N	ENST00000346208		179	Gac/Aac																																																																														
PAK1	5058	MSKCC	GRCh37	11	77069999	77069999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	80	408	0	ENST00000356341.3:c.541G>A	p.Asp181Asn	p.D181N	ENST00000356341	NM_002576.4	181	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108151884	108151884	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370602633		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	149	289	0	ENST00000278616.4:c.3565C>T	p.Leu1189Phe	p.L1189F	ENST00000278616	NM_000051.3	1189	Ctt/Ttt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416189	416189	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	145	313	0	ENST00000399788.2:c.3997C>G	p.Arg1333Gly	p.R1333G	ENST00000399788	NM_001042603.1	1333	Cga/Gga																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037486	12037487	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	110	302	0	ENST00000396373.4:c.1117_1118delinsTT	p.Pro373Phe	p.P373F	ENST00000396373	NM_001987.4	373	CCc/TTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435736	49435736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	202	567	0	ENST00000301067.7:c.6147G>T	p.Trp2049Cys	p.W2049C	ENST00000301067	NM_003482.3	2049	tgG/tgT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438623	49438623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754087735		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	191	514	0	ENST00000301067.7:c.4867G>A	p.Glu1623Lys	p.E1623K	ENST00000301067	NM_003482.3	1623	Gag/Aag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859405	57859405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	134	351	0	ENST00000228682.2:c.550G>A	p.Asp184Asn	p.D184N	ENST00000228682	NM_005269.2	184	Gac/Aac																																																																														
RB1	5925	MSKCC	GRCh37	13	48947629	48947630	+	splice_donor_variant	Splice_Site	DNP	GT	GT	AA			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	87	228	1	ENST00000267163.4:c.1215+1_1215+2delinsAA		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562562	95562563	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	98	272	1	ENST00000343455.3:c.4694_4695delinsTT	p.Ala1565Val	p.A1565V	ENST00000343455	NM_177438.2	1565	gCC/gTT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701095	43701095	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	115	305	0	ENST00000382044.4:c.5600G>A	p.Trp1867Ter	p.W1867*	ENST00000382044	NM_001141980.1	1867	tGg/tAg																																																																														
BLM	641	MSKCC	GRCh37	15	91354561	91354561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	114	347	0	ENST00000355112.3:c.4001G>C	p.Arg1334Thr	p.R1334T	ENST00000355112	NM_000057.2	1334	aGg/aCg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99486238	99486238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	191	452	0	ENST00000268035.6:c.3544G>A	p.Glu1182Lys	p.E1182K	ENST00000268035	NM_000875.3	1182	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993129	72993129	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	274	626	1	ENST00000268489.5:c.916C>T	p.Arg306Ter	p.R306*	ENST00000268489	NM_006885.3	306	Cga/Tga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350444	89350444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1160170926		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	389	751	0	ENST00000301030.4:c.2506G>A	p.Asp836Asn	p.D836N	ENST00000301030	NM_001256183.1	836	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577067	7577067	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	528	578	0	ENST00000269305.4:c.871A>T	p.Lys291Ter	p.K291*	ENST00000269305	NM_001126112.2	291	Aag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883664	37883664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	395	557	0	ENST00000269571.5:c.3276G>T	p.Met1092Ile	p.M1092I	ENST00000269571		1092	atG/atT																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56787254	56787254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	460	433	0	ENST00000337432.4:c.740C>T	p.Pro247Leu	p.P247L	ENST00000337432	NM_058216.2	247	cCa/cTa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208019	5208019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	193	531	0	ENST00000357368.4:c.5692G>C	p.Glu1898Gln	p.E1898Q	ENST00000357368	NM_002850.3	1898	Gag/Cag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243989	5243989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	210	460	0	ENST00000357368.4:c.1493C>T	p.Thr498Ile	p.T498I	ENST00000357368	NM_002850.3	498	aCc/aTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7166232	7166233	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	221	480	0	ENST00000302850.5:c.1793_1794delinsTT	p.Thr598Ile	p.T598I	ENST00000302850	NM_000208.2	598	aCC/aTT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265022	10265022	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1316701284		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	159	426	0	ENST00000340748.4:c.1918G>A	p.Asp640Asn	p.D640N	ENST00000340748		640	Gac/Aac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097266	11097266	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1210836682		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	144	491	0	ENST00000344626.4:c.757C>T	p.His253Tyr	p.H253Y	ENST00000344626	NM_003072.3	253	Cat/Tat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276302	15276302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	236	552	0	ENST00000263388.2:c.5692G>T	p.Asp1898Tyr	p.D1898Y	ENST00000263388	NM_000435.2	1898	Gac/Tac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211616	36211616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	68	384	0	ENST00000222270.7:c.1367C>T	p.Ser456Phe	p.S456F	ENST00000222270	NM_014727.1	456	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213342	36213342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	98	596	0	ENST00000222270.7:c.2539G>A	p.Glu847Lys	p.E847K	ENST00000222270	NM_014727.1	847	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213977	36213977	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	85	640	0	ENST00000222270.7:c.2803G>T	p.Glu935Ter	p.E935*	ENST00000222270	NM_014727.1	935	Gaa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216639	36216639	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	95	432	0	ENST00000222270.7:c.3805G>C	p.Glu1269Gln	p.E1269Q	ENST00000222270	NM_014727.1	1269	Gag/Cag																																																																														
CIC	23152	MSKCC	GRCh37	19	42795429	42795429	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1210506844		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	57	412	0	ENST00000575354.2:c.2509C>T	p.Gln837Ter	p.Q837*	ENST00000575354	NM_015125.3	837	Cag/Tag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868104	45868104	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	83	542	0	ENST00000391945.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000391945	NM_000400.3	196	Cga/Tga																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45871896	45871896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	72	410	0	ENST00000391945.4:c.352C>T	p.His118Tyr	p.H118Y	ENST00000391945	NM_000400.3	118	Cac/Tac																																																																														
IDH1	3417	MSKCC	GRCh37	2	209104653	209104653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	149	426	0	ENST00000345146.2:c.925C>A	p.His309Asn	p.H309N	ENST00000345146	NM_005896.2	309	Cac/Aac																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368479	225368479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	178	384	0	ENST00000264414.4:c.1267C>A	p.Gln423Lys	p.Q423K	ENST00000264414	NM_003590.4	423	Caa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101032	41101032	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	181	455	0	ENST00000373198.4:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000373198	NM_133170.3	442	Cag/Tag																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268488	46268488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	106	316	0	ENST00000371998.3:c.2875C>T	p.Pro959Ser	p.P959S	ENST00000371998		959	Ccc/Tcc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715660	30715660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	130	249	0	ENST00000359013.4:c.1393G>C	p.Glu465Gln	p.E465Q	ENST00000359013	NM_001024847.2	465	Gag/Cag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277976	41277976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	78	277	0	ENST00000349496.5:c.1940G>A	p.Arg647Lys	p.R647K	ENST00000349496	NM_001904.3	647	aGg/aAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277990	41277990	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	79	285	0	ENST00000349496.5:c.1954G>A	p.Ala652Thr	p.A652T	ENST00000349496	NM_001904.3	652	Gcg/Acg																																																																														
MST1	4485	MSKCC	GRCh37	3	49724700	49724701	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	136	392	1	ENST00000449682.2:c.488_489delinsAA	p.Arg163Gln	p.R163Q	ENST00000449682	NM_020998.3	163	cGG/cAA																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801217	1801217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886042775		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	208	564	0	ENST00000260795.2:c.346C>T	p.Arg116Cys	p.R116C	ENST00000260795		116	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517756	187517756	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	76	215	0	ENST00000441802.2:c.12938del	p.Pro4313LeufsTer36	p.P4313Lfs*36	ENST00000441802	NM_005245.3	4313	cCt/ct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630455	187630455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	227	641	0	ENST00000441802.2:c.527C>T	p.Ala176Val	p.A176V	ENST00000441802	NM_005245.3	176	gCa/gTa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80037345	80037345	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	95	220	0	ENST00000265081.6:c.1631A>G	p.Asn544Ser	p.N544S	ENST00000265081	NM_002439.4	544	aAt/aGt																																																																														
APC	324	MSKCC	GRCh37	5	112178640	112178640	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1489688452		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	136	337	0	ENST00000257430.4:c.7349C>T	p.Pro2450Leu	p.P2450L	ENST00000257430	NM_000038.5	2450	cCa/cTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672587	30672587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	189	557	0	ENST00000376406.3:c.4373C>T	p.Ser1458Phe	p.S1458F	ENST00000376406	NM_014641.2	1458	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120233	94120233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	114	300	0	ENST00000369303.4:c.818G>A	p.Gly273Glu	p.G273E	ENST00000369303	NM_004440.3	273	gGa/gAa																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519551	137519551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	136	319	0	ENST00000367739.4:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000367739	NM_000416.2	363	Cct/Tct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099176	157099176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264221880		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	98	205	0	ENST00000346085.5:c.113C>T	p.Ser38Phe	p.S38F	ENST00000346085	NM_020732.3	38	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845708	151845708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	188	468	0	ENST00000262189.6:c.13304G>A	p.Trp4435Ter	p.W4435*	ENST00000262189	NM_170606.2	4435	tGg/tAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151851409	151851409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	197	383	0	ENST00000262189.6:c.12082C>T	p.Pro4028Ser	p.P4028S	ENST00000262189	NM_170606.2	4028	Cct/Tct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874533	151874533	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	159	348	0	ENST00000262189.6:c.8005G>T	p.Glu2669Ter	p.E2669*	ENST00000262189	NM_170606.2	2669	Gaa/Taa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285944	38285944	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1169416110		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	153	345	0	ENST00000425967.3:c.467C>T	p.Pro156Leu	p.P156L	ENST00000425967	NM_001174067.1	156	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8338964	8338964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	139	373	0	ENST00000356435.5:c.5337G>T	p.Met1779Ile	p.M1779I	ENST00000356435		1779	atG/atT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500885	8500885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1193645875		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	190	451	0	ENST00000356435.5:c.1997C>T	p.Pro666Leu	p.P666L	ENST00000356435		666	cCt/cTt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135776126	135776126	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	143	352	0	ENST00000298552.3:c.2601G>C	p.Gln867His	p.Q867H	ENST00000298552	NM_001162426.1	867	caG/caC																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396202	139396203	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	149	458	0	ENST00000277541.6:c.5635_5636delinsTT	p.Pro1879Phe	p.P1879F	ENST00000277541	NM_017617.3	1879	CCt/TTt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410335	63410365	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGTCTCGGCTCCATTCTCCTTCTTCCTCC	ACTGTCTCGGCTCCATTCTCCTTCTTCCTCC	CTG			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	209	615	2	ENST00000330258.3:c.2802_2832delinsCAG	p.Glu934AspfsTer33	p.E934Dfs*33	ENST00000330258	NM_152424.3	934	gaGGAGGAAGAAGGAGAATGGAGCCGAGACAGT/gaCAG																																																																														
MED12	9968	MSKCC	GRCh37	X	70343544	70343544	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	209	501	0	ENST00000374080.3:c.1718T>A	p.Phe573Tyr	p.F573Y	ENST00000374080		573	tTt/tAt																																																																														
RB1	5925	MSKCC	GRCh37	13	49039402	49039402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1158706854		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	184	503	0	ENST00000267163.4:c.2387C>T	p.Pro796Leu	p.P796L	ENST00000267163	NM_000321.2	796	cCc/cTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7166233	7166233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772521737		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	221	472	0	ENST00000302850.5:c.1793C>T	p.Thr598Ile	p.T598I	ENST00000302850	NM_000208.2	598	aCc/aTc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039401	49039401	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs869264218		P-0037515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	183	500	0	ENST00000267163.4:c.2388del	p.Leu797TyrfsTer13	p.L797Yfs*13	ENST00000267163	NM_000321.2	796	Ccc/cc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	100	676	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	131	592	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	82	527	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ALK	238	MSKCC	GRCh37	2	29443612	29443612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	57	623	0	ENST00000389048.3:c.3605del	p.Gly1202GlufsTer56	p.G1202Efs*56	ENST00000389048	NM_004304.4	1202	gGa/ga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589605	67589616	+	inframe_deletion	In_Frame_Del	DEL	TCAAGAAAAAAG	TCAAGAAAAAAG	-			P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	59	252	0	ENST00000274335.5:c.1370_1381del	p.Gln457_Ser460del	p.Q457_S460del	ENST00000274335		456	ttTCAAGAAAAAAGt/ttt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	109	637	2	ENST00000298229.2:c.1322del	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316397	14316397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782457908		P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	31	474	0	ENST00000256196.4:c.208G>A	p.Ala70Thr	p.A70T	ENST00000256196		70	Gca/Aca																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11107184	11107186	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs1484395538		P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	140	542	0	ENST00000344626.4:c.1778_1780del	p.Glu593del	p.E593del	ENST00000344626	NM_003072.3	592	gcAGAa/gca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214058	36214058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1385766471		P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	159	789	0	ENST00000222270.7:c.2884C>T	p.Arg962Cys	p.R962C	ENST00000222270	NM_014727.1	962	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087939	27087939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	161	636	0	ENST00000324856.7:c.2227del	p.Gln743AsnfsTer90	p.Q743Nfs*90	ENST00000324856	NM_006015.4	742	aaC/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720674	89720674	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	108	224	0	ENST00000371953.3:c.827del	p.Asn276IlefsTer15	p.N276Ifs*15	ENST00000371953	NM_000314.4	275	gtA/gt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944169	71944169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148045527		P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	144	564	0	ENST00000298229.2:c.2002C>T	p.Arg668Trp	p.R668W	ENST00000298229	NM_001567.3	668	Cgg/Tgg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26828809	26828809	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	72	238	0	ENST00000381527.3:c.31A>C	p.Ser11Arg	p.S11R	ENST00000381527	NM_001260.1	11	Agc/Cgc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26970492	26970492	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	17	231	0	ENST00000381527.3:c.860+1G>A		p.X287_splice	ENST00000381527	NM_001260.1	287																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654720	67654720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	113	448	0	ENST00000264010.4:c.1207G>A	p.Gly403Arg	p.G403R	ENST00000264010	NM_006565.3	403	Ggg/Agg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1625599	1625599	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1281758564		P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	154	633	3	ENST00000344749.5:c.475C>T	p.Arg159Trp	p.R159W	ENST00000344749	NM_001136139.2	159	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628361	187628361	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1203002890		P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	141	760	1	ENST00000441802.2:c.2621C>T	p.Thr874Met	p.T874M	ENST00000441802	NM_005245.3	874	aCg/aTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588086	67588086	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	56	250	0	ENST00000274335.5:c.917-1G>A		p.X306_splice	ENST00000274335		306																																																																															
WHSC1L1	0	MSKCC	GRCh37	8	38189031	38189031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	95	718	0	ENST00000317025.8:c.983G>C	p.Arg328Pro	p.R328P	ENST00000317025	NM_023034.1	328	cGa/cCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499808	8499808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	145	537	0	ENST00000356435.5:c.2161G>A	p.Glu721Lys	p.E721K	ENST00000356435		721	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	56	379	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133225552	133225552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs535074635		P-0037613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	72	449	0	ENST00000320574.5:c.4112G>A	p.Arg1371Gln	p.R1371Q	ENST00000320574	NM_006231.2	1371	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099070	27099070	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	35	382	0	ENST00000324856.7:c.3486del	p.Pro1163GlnfsTer17	p.P1163Qfs*17	ENST00000324856	NM_006015.4	1162	ccA/cc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604661	48604663	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0037613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	21	267	0	ENST00000342988.3:c.1484_1486del	p.Leu495del	p.L495del	ENST00000342988	NM_005359.5	495	CTT/-																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839732	27839732	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1452025102		P-0037613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	29	379	2	ENST00000328488.2:c.362T>C	p.Met121Thr	p.M121T	ENST00000328488	NM_003533.2	121	aTg/aCg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212161	36212161	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1296215893		P-0037617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	224	375	0	ENST00000222270.7:c.1912G>C	p.Ala638Pro	p.A638P	ENST00000222270	NM_014727.1	638	Gcc/Ccc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509045	106509045	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	41	363	0	ENST00000359195.3:c.1039G>T	p.Glu347Ter	p.E347*	ENST00000359195	NM_002649.2	347	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0037668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	66	589	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
ALK	238	MSKCC	GRCh37	2	29446341	29446342	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0037668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	72	601	1	ENST00000389048.3:c.3225_3226delinsAA	p.Ser1075_Pro1076delinsArgThr	p.S1075_P1076delinsRT	ENST00000389048	NM_004304.4	1075	agCCct/agAAct																																																																														
PAK1	5058	MSKCC	GRCh37	11	77070006	77070006	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs866570863		P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	40	336	0	ENST00000356341.3:c.534T>G	p.Asp178Glu	p.D178E	ENST00000356341	NM_002576.4	178	gaT/gaG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	48	330	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913255		P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	98	465	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	46	231	0	ENST00000371953.3:c.376G>A	p.Ala126Thr	p.A126T	ENST00000371953	NM_000314.4	126	Gct/Act																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs786204863		P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	30	283	0	ENST00000371953.3:c.494G>T	p.Gly165Val	p.G165V	ENST00000371953	NM_000314.4	165	gGa/gTa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223229	36223229	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749130618		P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	78	701	0	ENST00000222270.7:c.5779C>T	p.Arg1927Trp	p.R1927W	ENST00000222270	NM_014727.1	1927	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	29416692	29416692	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	30	339	0	ENST00000389048.3:c.4261del	p.Val1421PhefsTer56	p.V1421Ffs*56	ENST00000389048	NM_004304.4	1421	Gtt/tt																																																																														
RB1	5925	MSKCC	GRCh37	13	49039207	49039208	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	42	332	0	ENST00000267163.4:c.2288_2289del	p.Arg763ThrfsTer31	p.R763Tfs*31	ENST00000267163	NM_000321.2	762	cAG/c																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2221355	2221355	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	43	461	0	ENST00000326181.6:c.441+1del		p.G147fs	ENST00000326181	NM_032271.2	147	Ggg/gg																																																																														
NF1	4763	MSKCC	GRCh37	17	29679334	29679334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	24	249	0	ENST00000358273.4:c.7517C>T	p.Ala2506Val	p.A2506V	ENST00000358273	NM_001042492.2	2506	gCc/gTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10259591	10259591	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs746143694		P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	61	496	0	ENST00000340748.4:c.2641A>G	p.Lys881Glu	p.K881E	ENST00000340748		881	Aaa/Gaa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222286	39222286	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	69	367	0	ENST00000402219.2:c.3324T>G	p.Asp1108Glu	p.D1108E	ENST00000402219	NM_005633.3	1108	gaT/gaG																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264272	46264272	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	35	224	0	ENST00000371998.3:c.1319C>G	p.Ala440Gly	p.A440G	ENST00000371998		440	gCt/gGt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433552	138433552	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	26	219	0	ENST00000289153.2:c.1060A>G	p.Arg354Gly	p.R354G	ENST00000289153	NM_006219.2	354	Agg/Ggg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591031	67591033	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs1370788402		P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	18	135	0	ENST00000274335.5:c.1630_1632del	p.Arg544del	p.R544del	ENST00000274335		542	AGA/-																																																																														
STK19	8859	MSKCC	GRCh37	6	31940520	31940520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1292507674		P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	47	424	0	ENST00000375331.2:c.553G>A	p.Ala185Thr	p.A185T	ENST00000375331	NM_004197.1	185	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859267	151859267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	53	335	0	ENST00000262189.6:c.11395T>C	p.Cys3799Arg	p.C3799R	ENST00000262189	NM_170606.2	3799	Tgt/Cgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058542	69058542	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	34	463	1	ENST00000288368.4:c.4190del	p.Asn1397MetfsTer16	p.N1397Mfs*16	ENST00000288368	NM_024870.2	1396	Aaa/aa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39935711	39935711	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1435258487		P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	33	317	0	ENST00000378444.4:c.161A>G	p.Asn54Ser	p.N54S	ENST00000378444	NM_001123385.1	54	aAc/aGc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411207	63411207	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	57	481	0	ENST00000330258.3:c.1960T>G	p.Tyr654Asp	p.Y654D	ENST00000330258	NM_152424.3	654	Tat/Gat																																																																														
ATRX	546	MSKCC	GRCh37	X	76939495	76939495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	61	465	0	ENST00000373344.5:c.1253G>A	p.Arg418Gln	p.R418Q	ENST00000373344	NM_000489.3	418	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0037676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	272	413	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
NF2	4771	MSKCC	GRCh37	22	30061032	30061032	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	88	317	0	ENST00000338641.4:c.866del	p.Lys289SerfsTer7	p.K289Sfs*7	ENST00000338641	NM_000268.3	288	tcA/tc																																																																														
BTK	695	MSKCC	GRCh37	X	100613405	100613405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	80	338	0	ENST00000308731.7:c.995G>A	p.Arg332His	p.R332H	ENST00000308731	NM_000061.2	332	cGt/cAt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123227911	123227911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	48	242	0	ENST00000218089.9:c.3622G>A	p.Val1208Met	p.V1208M	ENST00000218089	NM_001042749.1	1208	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	105	143	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578499	7578499	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs786203071		P-0037682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	139	581	0	ENST00000269305.4:c.431A>C	p.Gln144Pro	p.Q144P	ENST00000269305	NM_001126112.2	144	cAg/cCg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107749	30107749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760459161		P-0037682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	65	399	0	ENST00000331968.5:c.931C>T	p.Arg311Cys	p.R311C	ENST00000331968	NM_002742.2	311	Cgt/Tgt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913579	32913579	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1135401904		P-0037682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	191	253	0	ENST00000380152.3:c.5087G>T	p.Gly1696Val	p.G1696V	ENST00000380152		1696	gGa/gTa																																																																														
VHL	7428	MSKCC	GRCh37	3	10188197	10188197	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0037695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	33	498	0	ENST00000256474.2:c.341-1G>T		p.X114_splice	ENST00000256474	NM_000551.3	114																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	18	380	3	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794816	242794816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	50	608	0	ENST00000334409.5:c.393G>T	p.Lys131Asn	p.K131N	ENST00000334409	NM_005018.2	131	aaG/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112154742	112154742	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	44	472	0	ENST00000257430.4:c.1013C>G	p.Ser338Cys	p.S338C	ENST00000257430	NM_000038.5	338	tCt/tGt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58678138	58678138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	400	653	0	ENST00000305921.3:c.363G>A	p.Trp121Ter	p.W121*	ENST00000305921	NM_003620.3	121	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	222	721	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521487	8521487	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758577045		P-0037701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	219	675	0	ENST00000356435.5:c.751G>A	p.Gly251Arg	p.G251R	ENST00000356435		251	Gga/Aga																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40371842	40371842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	236	936	0	ENST00000293328.3:c.569C>T	p.Ala190Val	p.A190V	ENST00000293328	NM_012448.3	190	gCc/gTc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688815	47688815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	144	408	0	ENST00000347630.2:c.485G>A	p.Ser162Asn	p.S162N	ENST00000347630	NM_001007230.1	162	aGt/aAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48953735	48953735	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0037702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	226	224	0	ENST00000267163.4:c.1338C>G	p.Tyr446Ter	p.Y446*	ENST00000267163	NM_000321.2	446	taC/taG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057520008		P-0037702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	1176	664	0	ENST00000269305.4:c.613T>A	p.Tyr205Asn	p.Y205N	ENST00000269305	NM_001126112.2	205	Tat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89456497	89456497	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs762801053		P-0037702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	255	407	0	ENST00000336596.2:c.1673T>C	p.Val558Ala	p.V558A	ENST00000336596	NM_005233.5	558	gTt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	240	745	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	54	245	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0037744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	140	449	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245380	153245380	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	165	594	0	ENST00000281708.4:c.1811A>C	p.Lys604Thr	p.K604T	ENST00000281708	NM_033632.3	604	aAa/aCa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251901	153251901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	118	416	0	ENST00000281708.4:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000281708	NM_033632.3	369	Gaa/Taa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2978444	2978444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	200	695	0	ENST00000396946.4:c.886G>A	p.Asp296Asn	p.D296N	ENST00000396946	NM_032415.4	296	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577150	7577150	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	329	650	1	ENST00000269305.4:c.788del	p.Asn263IlefsTer82	p.N263Ifs*82	ENST00000269305	NM_001126112.2	263	aAt/at																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376727	31376727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	322	617	0	ENST00000328111.2:c.722C>T	p.Ala241Val	p.A241V	ENST00000328111	NM_006892.3	241	gCc/gTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32900274	32900274	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	149	369	0	ENST00000380152.3:c.462A>C	p.Gln154His	p.Q154H	ENST00000380152		154	caA/caC																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061225	+	inframe_deletion	In_Frame_Del	DEL	CGTTCT	CGTTCT	-			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	282	557	0	ENST00000250448.2:c.764_769del	p.Glu255_Asn256del	p.E255_N256del	ENST00000250448	NM_004496.3	255	gAGAACGgc/ggc																																																																														
POLE	5426	MSKCC	GRCh37	12	133244949	133244949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	544	776	0	ENST00000320574.5:c.2166G>T	p.Arg722Ser	p.R722S	ENST00000320574	NM_006231.2	722	agG/agT																																																																														
UPF1	5976	MSKCC	GRCh37	19	18966754	18966754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	313	903	0	ENST00000262803.5:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000262803	NM_002911.3	522	cCg/cTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262362	16262362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	122	390	0	ENST00000375759.3:c.9627G>T	p.Gln3209His	p.Q3209H	ENST00000375759	NM_015001.2	3209	caG/caT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057790	27057790	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	195	917	0	ENST00000324856.7:c.1498T>G	p.Tyr500Asp	p.Y500D	ENST00000324856	NM_006015.4	500	Tat/Gat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106704	27106707	+	frameshift_variant	Frame_Shift_Del	DEL	CCTG	CCTG	-			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	243	658	0	ENST00000324856.7:c.6315_6318del	p.Leu2106AlafsTer28	p.L2106Afs*28	ENST00000324856	NM_006015.4	2105	acCCTG/ac																																																																														
GNA11	2767	MSKCC	GRCh37	19	3113328	3113336	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GCCAATGCG	GCCAATGCG	TC			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	297	615	2	ENST00000078429.4:c.322_330delinsTC	p.Ala108SerfsTer3	p.A108Sfs*3	ENST00000078429	NM_002067.2	108	GCCAATGCG/TC																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522214	157522214	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	234	743	0	ENST00000346085.5:c.4486A>C	p.Thr1496Pro	p.T1496P	ENST00000346085	NM_020732.3	1496	Aca/Cca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0037811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	1148	710	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
MED12	9968	MSKCC	GRCh37	X	70357715	70357715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	89	381	0	ENST00000374080.3:c.5966G>A	p.Arg1989His	p.R1989H	ENST00000374080		1989	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175645	112175645	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	18	322	0	ENST00000257430.4:c.4354del	p.Val1452TyrfsTer21	p.V1452Yfs*21	ENST00000257430	NM_000038.5	1452	Gta/ta																																																																														
MET	4233	MSKCC	GRCh37	7	116340270	116340270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749738523		P-0037811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	54	231	0	ENST00000397752.3:c.1132G>A	p.Val378Ile	p.V378I	ENST00000397752	NM_000245.2	378	Gtc/Atc																																																																														
MITF	4286	MSKCC	GRCh37	3	69928446	69928446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	117	596	0	ENST00000352241.4:c.266G>A	p.Arg89Lys	p.R89K	ENST00000352241	NM_198159.2	89	aGa/aAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793349		P-0037869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	100	256	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	46	257	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0037880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	32	188	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
JUN	3725	MSKCC	GRCh37	1	59248601	59248602	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0037880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	61	571	0	ENST00000371222.2:c.140_141dup	p.Ser48GlyfsTer3	p.S48Gfs*3	ENST00000371222	NM_002228.3	47	-/GG																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724450	112724450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	40	325	0	ENST00000369452.4:c.334A>G	p.Ile112Val	p.I112V	ENST00000369452	NM_007373.3	112	Ata/Gta																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712533	43712533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	64	468	2	ENST00000382044.4:c.4651G>A	p.Ala1551Thr	p.A1551T	ENST00000382044	NM_001141980.1	1551	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579558	7579596	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAG	CAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAG	-			P-0037880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	72	503	0	ENST00000269305.4:c.97-6_129del		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
FAM175A	0	MSKCC	GRCh37	4	84391441	84391441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	29	207	0	ENST00000321945.7:c.391G>A	p.Val131Ile	p.V131I	ENST00000321945	NM_139076.2	131	Gtt/Att																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045856	26045929	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAAATCGCCCAGGACTTCAAAACCGACCTGCGTTTCCAGAGCTCTGCGGTGATGGCGCTGCAGGAGGCTTGT	GAGAAATCGCCCAGGACTTCAAAACCGACCTGCGTTTCCAGAGCTCTGCGGTGATGGCGCTGCAGGAGGCTTGT	-			P-0037880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	38	337	0	ENST00000540144.1:c.221_294del	p.Glu74GlyfsTer18	p.E74Gfs*18	ENST00000540144	NM_003531.2	73	cGAGAAATCGCCCAGGACTTCAAAACCGACCTGCGTTTCCAGAGCTCTGCGGTGATGGCGCTGCAGGAGGCTTGT/c																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039834	47039834	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	145	319	0	ENST00000329236.7:c.943G>T	p.Glu315Ter	p.E315*	ENST00000329236	NM_001204466.1	315	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691027		P-0037949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	42	591	0	ENST00000269305.4:c.844del	p.Arg282GlyfsTer63	p.R282Gfs*63	ENST00000269305	NM_001126112.2	282	Cgg/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	115	290	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	282	598	4	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	105	309	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	205	511	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	94	283	0	ENST00000342988.3:c.1610A>C	p.Asp537Ala	p.D537A	ENST00000342988	NM_005359.5	537	gAc/gCc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004721	150004721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1034620976		P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	114	434	0	ENST00000253339.5:c.1504C>T	p.Arg502Cys	p.R502C	ENST00000253339		502	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175036	112175037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	50	164	0	ENST00000257430.4:c.3746dup	p.Cys1249TrpfsTer7	p.C1249Wfs*7	ENST00000257430	NM_000038.5	1249	tgc/tGgc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11193154	11193154	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1471906651		P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	175	443	0	ENST00000361445.4:c.5347G>A	p.Asp1783Asn	p.D1783N	ENST00000361445	NM_004958.3	1783	Gac/Aac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114799817	114799817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	143	407	0	ENST00000543371.1:c.484C>T	p.Gln162Ter	p.Q162*	ENST00000543371	NM_001198531.1	162	Cag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231290	46231290	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	104	255	0	ENST00000334344.6:c.1133del	p.Leu378TrpfsTer13	p.L378Wfs*13	ENST00000334344	NM_152641.2	377	aTt/at																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2213553	2213553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	191	615	0	ENST00000398665.3:c.1573C>G	p.Leu525Val	p.L525V	ENST00000398665	NM_032482.2	525	Ctc/Gtc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344204	118344204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	48	566	0	ENST00000534358.1:c.2330C>G	p.Ser777Cys	p.S777C	ENST00000534358	NM_005933.3	777	tCt/tGt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230533	46230533	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	27	414	0	ENST00000334344.6:c.782C>G	p.Ser261Ter	p.S261*	ENST00000334344	NM_152641.2	261	tCa/tGa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243951	46243951	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	54	466	0	ENST00000334344.6:c.2045C>G	p.Ser682Ter	p.S682*	ENST00000334344	NM_152641.2	682	tCa/tGa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2135315	2135315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	55	626	0	ENST00000219476.3:c.4654G>C	p.Glu1552Gln	p.E1552Q	ENST00000219476	NM_000548.3	1552	Gaa/Caa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610210	10610210	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	291	821	0	ENST00000171111.5:c.500T>A	p.Val167Asp	p.V167D	ENST00000171111	NM_203500.1	167	gTt/gAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55597566	55597566	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	99	445	0	ENST00000288135.5:c.2214A>C	p.Lys738Asn	p.K738N	ENST00000288135	NM_000222.2	738	aaA/aaC																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56180603	56180603	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1269929971		P-0038256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	70	400	0	ENST00000399503.3:c.3932G>A	p.Gly1311Glu	p.G1311E	ENST00000399503	NM_005921.1	1311	gGa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	69	395	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	224	580	0	ENST00000269305.4:c.761T>A	p.Ile254Asn	p.I254N	ENST00000269305	NM_001126112.2	254	aTc/aAc																																																																														
IL10	3586	MSKCC	GRCh37	1	206945615	206945615	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0038376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	60	434	0	ENST00000423557.1:c.165+1G>T		p.X55_splice	ENST00000423557	NM_000572.2	55																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7979529	7979529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768784091		P-0038376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	51	622	1	ENST00000319144.4:c.1496G>A	p.Arg499His	p.R499H	ENST00000319144	NM_001139.2	499	cGc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317070	11317070	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766996808		P-0038376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	55	603	1	ENST00000361445.4:c.424G>A	p.Ala142Thr	p.A142T	ENST00000361445	NM_004958.3	142	Gct/Act																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780566	56780566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	42	467	0	ENST00000337432.4:c.581A>G	p.Lys194Arg	p.K194R	ENST00000337432	NM_058216.2	194	aAa/aGa																																																																														
CASP8	841	MSKCC	GRCh37	2	202149818	202149819	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	96	595	0	ENST00000358485.4:c.1259_1260del	p.Gln420ArgfsTer3	p.Q420Rfs*3	ENST00000358485	NM_001080125.1	420	cAG/c																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933633	49933633	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	68	816	0	ENST00000296474.3:c.2644T>G	p.Phe882Val	p.F882V	ENST00000296474	NM_002447.2	882	Ttt/Gtt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915187	131915188	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0038376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	35	446	1	ENST00000265335.6:c.544_545delinsCT	p.Ala182Leu	p.A182L	ENST00000265335		182	GCa/CTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176684029	176684029	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	137	609	1	ENST00000439151.2:c.4843T>A	p.Tyr1615Asn	p.Y1615N	ENST00000439151	NM_022455.4	1615	Tac/Aac																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271350	26271350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	59	529	0	ENST00000305910.3:c.263C>G	p.Ser88Cys	p.S88C	ENST00000305910	NM_003534.2	88	tCc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			120	17	239	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	223	690	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056283	26056283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1459637809		P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1204	145	528	0	ENST00000343677.2:c.374G>A	p.Gly125Glu	p.G125E	ENST00000343677	NM_005319.3	125	gGa/gAa																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732535	74732535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	49	163	0	ENST00000359995.5:c.374G>A	p.Arg125His	p.R125H	ENST00000359995	NM_001195427.1	125	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175930	112175930	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	54	222	0	ENST00000257430.4:c.4639G>T	p.Glu1547Ter	p.E1547*	ENST00000257430	NM_000038.5	1547	Gaa/Taa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175882	24175882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	94	438	0	ENST00000263121.7:c.1110G>T	p.Arg370Ser	p.R370S	ENST00000263121	NM_003073.3	370	agG/agT																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247174	153247174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	54	259	0	ENST00000281708.4:c.1628G>A	p.Arg543Lys	p.R543K	ENST00000281708	NM_033632.3	543	aGa/aAa																																																																														
ATM	472	MSKCC	GRCh37	11	108224531	108224531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	33	321	0	ENST00000278616.4:c.8710G>C	p.Glu2904Gln	p.E2904Q	ENST00000278616	NM_000051.3	2904	Gag/Cag																																																																														
EP300	2033	MSKCC	GRCh37	22	41572904	41572904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	86	628	0	ENST00000263253.7:c.5189C>T	p.Ser1730Phe	p.S1730F	ENST00000263253	NM_001429.3	1730	tCt/tTt																																																																														
TET1	80312	MSKCC	GRCh37	10	70406383	70406383	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149145995		P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	72	691	0	ENST00000373644.4:c.3897G>C	p.Leu1299Phe	p.L1299F	ENST00000373644	NM_030625.2	1299	ttG/ttC																																																																														
SESN3	143686	MSKCC	GRCh37	11	94908721	94908721	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1390641197		P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			881	58	613	0	ENST00000536441.1:c.1333G>C	p.Glu445Gln	p.E445Q	ENST00000536441	NM_144665.3	445	Gag/Cag																																																																														
ATM	472	MSKCC	GRCh37	11	108236158	108236159	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAAT			P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	73	625	0	ENST00000278616.4:c.9096_9100dup	p.Leu3034Ter	p.L3034*	ENST00000278616	NM_000051.3	3032	gtg/gTGAATtg																																																																														
CDH1	999	MSKCC	GRCh37	16	68835613	68835613	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	186	544	0	ENST00000261769.5:c.204T>A	p.Tyr68Ter	p.Y68*	ENST00000261769	NM_004360.3	68	taT/taA																																																																														
ACVR1	90	MSKCC	GRCh37	2	158595023	158595023	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	63	424	0	ENST00000263640.3:c.1324G>T	p.Glu442Ter	p.E442*	ENST00000263640	NM_001105.4	442	Gaa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714460	40714460	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775362831		P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	15	397	2	ENST00000373198.4:c.3937G>A	p.Gly1313Arg	p.G1313R	ENST00000373198	NM_133170.3	1313	Ggg/Agg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143114271	143114271	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	46	353	0	ENST00000262992.4:c.1150C>G	p.Leu384Val	p.L384V	ENST00000262992	NM_001101669.1	384	Cta/Gta																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38153408	38153408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	101	571	0	ENST00000317025.8:c.2821G>C	p.Glu941Gln	p.E941Q	ENST00000317025	NM_023034.1	941	Gaa/Caa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0038720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	301	559	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346798	89346798	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0038720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	265	590	1	ENST00000301030.4:c.6152C>G	p.Ser2051Ter	p.S2051*	ENST00000301030	NM_001256183.1	2051	tCa/tGa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405630	139405630	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	463	836	0	ENST00000277541.6:c.2561C>G	p.Ser854Cys	p.S854C	ENST00000277541	NM_017617.3	854	tCc/tGc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340408	8340408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775122610		P-0038720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	318	625	1	ENST00000356435.5:c.5188C>T	p.Arg1730Trp	p.R1730W	ENST00000356435		1730	Cgg/Tgg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350918	89350918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	461	930	0	ENST00000301030.4:c.2032C>G	p.Leu678Val	p.L678V	ENST00000301030	NM_001256183.1	678	Ctt/Gtt																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326100	62326100	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs772175599		P-0038720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	66	727	2	ENST00000482936.1:c.3116C>T	p.Pro1039Leu	p.P1039L	ENST00000482936		1039	cCt/cTt																																																																														
VHL	7428	MSKCC	GRCh37	3	10183700	10183700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	339	601	0	ENST00000256474.2:c.169G>T	p.Gly57Trp	p.G57W	ENST00000256474	NM_000551.3	57	Ggg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55260503	55260503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	286	698	0	ENST00000275493.2:c.2670C>G	p.Ile890Met	p.I890M	ENST00000275493	NM_005228.3	890	atC/atG																																																																														
RHEB	6009	MSKCC	GRCh37	7	151188059	151188059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	139	587	0	ENST00000262187.5:c.94G>C	p.Val32Leu	p.V32L	ENST00000262187	NM_005614.3	32	Gtg/Ctg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128432026	128432127	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATAAAAGTTCTTATATAATAAACTAAATATATAAATCTCAAATTAAGAATTAAAATCATTTCCATTTACCTGATTGCTTAGAATTTCTTTCTTTCCACTG	AAATAAAAGTTCTTATATAATAAACTAAATATATAAATCTCAAATTAAGAATTAAAATCATTTCCATTTACCTGATTGCTTAGAATTTCTTTCTTTCCACTG	-			P-0038720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	138	214	0	ENST00000265960.3:c.319_349+71del		p.X107_splice	ENST00000265960	NM_001006617.1	107																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	153	313	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs483352695		P-0038793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	152	482	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
SRC	6714	MSKCC	GRCh37	20	36031750	36031750	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs879255268		P-0038793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	161	511	1	ENST00000358208.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000358208		527	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971175	21971182	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCGCCA	CTCCGCCA	-			P-0038793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	134	242	0	ENST00000304494.5:c.176_183del	p.Val59AlafsTer58	p.V59Afs*58	ENST00000304494	NM_000077.4	59	gTGGCGGAG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971175	21971182	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCGCCA	CTCCGCCA	-			P-0038793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	134	242	0	ENST00000304494.5:c.176_183del	p.Val59AlafsTer58	p.V59Afs*58	ENST00000304494	NM_000077.4	59	gTGGCGGAG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971175	21971182	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCGCCA	CTCCGCCA	-			P-0038793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	134	242	0	ENST00000304494.5:c.176_183del	p.Val59AlafsTer58	p.V59Afs*58	ENST00000304494	NM_000077.4	59	gTGGCGGAG/g																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	143	215	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs121913468		P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	1474	442	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129378	2129378	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368095502		P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	345	597	0	ENST00000219476.3:c.3233G>A	p.Arg1078Gln	p.R1078Q	ENST00000219476	NM_000548.3	1078	cGg/cAg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923594	39923594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	29	255	0	ENST00000378444.4:c.3497C>T	p.Ser1166Phe	p.S1166F	ENST00000378444	NM_001123385.1	1166	tCt/tTt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739873	41739873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1261664857		P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	210	421	0	ENST00000242208.4:c.100G>A	p.Asp34Asn	p.D34N	ENST00000242208	NM_002192.2	34	Gac/Aac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28602358	28602358	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1958	151	388	0	ENST00000241453.7:c.2010C>G	p.Ser670Arg	p.S670R	ENST00000241453	NM_004119.2	670	agC/agG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578463	7578464	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTG			P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	908	720	0	ENST00000269305.4:c.462_466dup	p.Arg156ProfsTer16	p.R156Pfs*16	ENST00000269305	NM_001126112.2	156	cgc/cCACCCgc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412529	63412530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0038803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	551	281	0	ENST00000330258.3:c.637_638insGG	p.Gln213ArgfsTer70	p.Q213Rfs*70	ENST00000330258	NM_152424.3	213	cag/cGGag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	253	836	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112170747	112170747	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	119	513	0	ENST00000257430.4:c.1847del	p.Leu616TrpfsTer14	p.L616Wfs*14	ENST00000257430	NM_000038.5	615	Ttt/tt																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202232	138202232	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561168863		P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	111	548	0	ENST00000237289.4:c.2149G>A	p.Ala717Thr	p.A717T	ENST00000237289	NM_001270507.1	717	Gcc/Acc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662382	227662382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	168	661	0	ENST00000305123.5:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000305123	NM_005544.2	358	cGg/cAg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29115452	29115452	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759734429		P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	45	327	0	ENST00000328354.6:c.614C>T	p.Thr205Ile	p.T205I	ENST00000328354	NM_007194.3	205	aCt/aTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187516878	187516878	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	22	484	0	ENST00000441802.2:c.13103T>G	p.Leu4368Arg	p.L4368R	ENST00000441802	NM_005245.3	4368	cTg/cGg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187516883	187516883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	21	493	0	ENST00000441802.2:c.13098G>T	p.Gln4366His	p.Q4366H	ENST00000441802	NM_005245.3	4366	caG/caT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781846	3781848	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0039269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	226	550	9	ENST00000262367.5:c.4819_4821del	p.Lys1607del	p.K1607del	ENST00000262367	NM_004380.2	1607	AAG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7579481	7579482	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0039269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	511	601	9	ENST00000269305.4:c.205_206del	p.Ala69CysfsTer79	p.A69Cfs*79	ENST00000269305	NM_001126112.2	69	GCt/t																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0039375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	82	726	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440109	49440109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	90	838	0	ENST00000301067.7:c.4517C>A	p.Thr1506Asn	p.T1506N	ENST00000301067	NM_003482.3	1506	aCc/aAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993470	72993470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	96	886	1	ENST00000268489.5:c.575C>T	p.Pro192Leu	p.P192L	ENST00000268489	NM_006885.3	192	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579415	7579416	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	106	879	1	ENST00000269305.4:c.271dup	p.Trp91LeufsTer58	p.W91Lfs*58	ENST00000269305	NM_001126112.2	91	tgg/tTgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440958	56440976	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCCTGCAGAGGCACACA	GAGCCTGCAGAGGCACACA	-			P-0039375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	51	684	0	ENST00000407977.2:c.376-15_379del		p.X126_splice	ENST00000407977		126																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	119	403	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	43	675	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138135	2138135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201206500		P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	186	899	2	ENST00000219476.3:c.5155G>A	p.Ala1719Thr	p.A1719T	ENST00000219476	NM_000548.3	1719	Gca/Aca																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27840003	27840003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	48	469	0	ENST00000328488.2:c.91C>A	p.Pro31Thr	p.P31T	ENST00000328488	NM_003533.2	31	Ccg/Acg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	545	956	1	ENST00000269305.4:c.440T>A	p.Val147Asp	p.V147D	ENST00000269305	NM_001126112.2	147	gTt/gAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120366	94120366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1216099858		P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	51	286	0	ENST00000369303.4:c.685G>A	p.Glu229Lys	p.E229K	ENST00000369303	NM_004440.3	229	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542708	187542708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	33	410	0	ENST00000441802.2:c.5032G>A	p.Glu1678Lys	p.E1678K	ENST00000441802	NM_005245.3	1678	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255316	16255316	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	60	496	0	ENST00000375759.3:c.2581A>C	p.Lys861Gln	p.K861Q	ENST00000375759	NM_015001.2	861	Aaa/Caa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656340	18656340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1225421850		P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	82	397	0	ENST00000266497.5:c.3019G>A	p.Asp1007Asn	p.D1007N	ENST00000266497		1007	Gat/Aat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476312	88476312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	49	707	1	ENST00000360948.2:c.1820G>A	p.Cys607Tyr	p.C607Y	ENST00000360948	NM_001012338.2	607	tGc/tAc																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647160	2647160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	35	514	0	ENST00000342085.4:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000342085	NM_002613.4	480	Gaa/Aaa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971355	15971355	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	118	693	0	ENST00000268712.3:c.4594A>G	p.Lys1532Glu	p.K1532E	ENST00000268712	NM_006311.3	1532	Aag/Gag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16068439	16068439	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	11	113	0	ENST00000268712.3:c.472T>A	p.Ser158Thr	p.S158T	ENST00000268712	NM_006311.3	158	Tct/Act																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222142	2222142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	69	886	1	ENST00000398665.3:c.2974G>A	p.Ala992Thr	p.A992T	ENST00000398665	NM_032482.2	992	Gca/Aca																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026091	48026092	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAACAAGCAACT			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	54	421	0	ENST00000234420.5:c.971_982dup	p.Lys324_Thr327dup	p.K324_T327dup	ENST00000234420	NM_000179.2	324	-/AAACAAGCAACT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980856	40980856	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	61	591	0	ENST00000373198.4:c.1630A>T	p.Lys544Ter	p.K544*	ENST00000373198	NM_133170.3	544	Aag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156591	55156591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	221	624	0	ENST00000257290.5:c.2992G>A	p.Asp998Asn	p.D998N	ENST00000257290	NM_006206.4	998	Gac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112175964	112175964	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	21	273	0	ENST00000257430.4:c.4673A>T	p.Asp1558Val	p.D1558V	ENST00000257430	NM_000038.5	1558	gAt/gTt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497410	149497410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	45	554	0	ENST00000261799.4:c.2908T>A	p.Tyr970Asn	p.Y970N	ENST00000261799	NM_002609.3	970	Tac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928823	44928823	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	74	305	0	ENST00000377967.4:c.1926del		p.X642_splice	ENST00000377967	NM_021140.2	642																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040799	47040802	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AGGT	AGGT	C			P-0039448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	174	810	0	ENST00000329236.7:c.1200_1201+2delinsC		p.X400_splice	ENST00000329236	NM_001204466.1	400																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0039481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	15	555	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519816		P-0039503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	174	727	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1057519911		P-0039503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	59	458	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307316	118307316	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs9332745		P-0039503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	14	14	0	ENST00000534358.1:c.89C>G	p.Ala30Gly	p.A30G	ENST00000534358	NM_005933.3	30	gCc/gGc																																																																														
JUN	3725	MSKCC	GRCh37	1	59248319	59248319	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	23	207	0	ENST00000371222.2:c.424A>C	p.Met142Leu	p.M142L	ENST00000371222	NM_002228.3	142	Atg/Ctg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344150	118344150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	120	536	0	ENST00000534358.1:c.2276G>A	p.Ser759Asn	p.S759N	ENST00000534358	NM_005933.3	759	aGt/aAt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774200	56774200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	77	372	0	ENST00000337432.4:c.551C>A	p.Ala184Glu	p.A184E	ENST00000337432	NM_058216.2	184	gCa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0039601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	63	401	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
KIT	3815	MSKCC	GRCh37	4	55564515	55564515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754738766		P-0039601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	108	492	1	ENST00000288135.5:c.403C>T	p.Arg135Cys	p.R135C	ENST00000288135	NM_000222.2	135	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378558	25378558	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1135401776		P-0039601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	74	369	1	ENST00000256078.4:c.440A>G	p.Lys147Arg	p.K147R	ENST00000256078	NM_033360.2	147	aAg/aGg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226102	2226102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	197	804	3	ENST00000326181.6:c.1799G>C	p.Gly600Ala	p.G600A	ENST00000326181	NM_032271.2	600	gGc/gCc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831324	72831324	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	62	347	0	ENST00000268489.5:c.5257C>T	p.Gln1753Ter	p.Q1753*	ENST00000268489	NM_006885.3	1753	Caa/Taa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120116	70120116	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs112211472		P-0039694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	19	104	0	ENST00000245479.2:c.1118C>G	p.Pro373Arg	p.P373R	ENST00000245479	NM_000346.3	373	cCc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928063	178928080	+	inframe_deletion	In_Frame_Del	DEL	AGTACCTCATGGATTAGA	AGTACCTCATGGATTAGA	-			P-0039694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	148	459	0	ENST00000263967.3:c.1343_1360del	p.Val448_Glu453del	p.V448_E453del	ENST00000263967	NM_006218.2	447	ccAGTACCTCATGGATTAGAa/cca																																																																														
TET2	54790	MSKCC	GRCh37	4	106157186	106157186	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	65	382	0	ENST00000380013.4:c.2087C>G	p.Ser696Cys	p.S696C	ENST00000380013	NM_001127208.2	696	tCc/tGc																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271281	26271281	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	40	474	0	ENST00000305910.3:c.332G>C	p.Cys111Ser	p.C111S	ENST00000305910	NM_003534.2	111	tGt/tCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	15	555	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0039724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	20	654	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	81	433	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023140	27023155	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCGGCGGCGGCGGA	TGGCGGCGGCGGCGGA	-			P-0039733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	166	38	0	ENST00000324856.7:c.246_261del	p.Gly83ProfsTer13	p.G83Pfs*13	ENST00000324856	NM_006015.4	82	ggTGGCGGCGGCGGCGGA/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786201592		P-0039772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	466	660	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589149	67589151	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0039772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	93	269	0	ENST00000274335.5:c.1138_1140del	p.Leu380del	p.L380del	ENST00000274335		379	aaATTa/aaa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696345	47696345	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	285	402	0	ENST00000347630.2:c.478G>A	p.Glu160Lys	p.E160K	ENST00000347630	NM_001007230.1	160	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023818	27023818	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	409	379	0	ENST00000324856.7:c.924C>G	p.Tyr308Ter	p.Y308*	ENST00000324856	NM_006015.4	308	taC/taG																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192429	138192429	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	102	239	0	ENST00000237289.4:c.65G>C	p.Arg22Pro	p.R22P	ENST00000237289	NM_001270507.1	22	cGg/cCg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	104	392	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CD274	29126	MSKCC	GRCh37	9	5465595	5465595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148141792		P-0039775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	113	229	0	ENST00000381577.3:c.779G>A	p.Arg260His	p.R260H	ENST00000381577	NM_014143.3	260	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs587782289		P-0039775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	216	611	0	ENST00000269305.4:c.706T>A	p.Tyr236Asn	p.Y236N	ENST00000269305	NM_001126112.2	236	Tac/Aac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220023	5220023	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1690	255	791	1	ENST00000357368.4:c.3692T>A	p.Phe1231Tyr	p.F1231Y	ENST00000357368	NM_002850.3	1231	tTc/tAc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	69	518	0	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0039786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	167	549	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs794727798		P-0039786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	151	637	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248599	212248599	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1281587425		P-0039786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	129	473	0	ENST00000342788.4:c.3668A>G	p.Lys1223Arg	p.K1223R	ENST00000342788	NM_005235.2	1223	aAg/aGg																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39318104	39318104	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	80	497	1	ENST00000373001.3:c.698T>C	p.Val233Ala	p.V233A	ENST00000373001	NM_022157.3	233	gTg/gCg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691182	18691182	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	57	358	0	ENST00000266497.5:c.3293T>C	p.Leu1098Pro	p.L1098P	ENST00000266497		1098	cTt/cCt																																																																														
NF1	4763	MSKCC	GRCh37	17	29587437	29587438	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0039786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	102	305	0	ENST00000358273.4:c.4482_4483del	p.His1494GlnfsTer7	p.H1494Qfs*7	ENST00000358273	NM_001042492.2	1494	cAT/c																																																																														
EP300	2033	MSKCC	GRCh37	22	41543923	41543923	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	47	586	1	ENST00000263253.7:c.2214G>C	p.Gln738His	p.Q738H	ENST00000263253	NM_001429.3	738	caG/caC																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517964	8517964	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	64	310	0	ENST00000356435.5:c.1427T>G	p.Ile476Ser	p.I476S	ENST00000356435		476	aTc/aGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	11	190	0				ENST00000310581	NM_198253.2																																																																																
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	27	392	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	109	607	0	ENST00000267101.3:c.273G>A	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atA																																																																														
AXIN1	8312	MSKCC	GRCh37	16	338190	338190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs370661416		P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	43	651	0	ENST00000262320.3:c.2521C>T	p.Arg841Ter	p.R841*	ENST00000262320	NM_003502.3	841	Cga/Tga																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	44	416	0	ENST00000327367.4:c.1265C>A	p.Ser422Tyr	p.S422Y	ENST00000327367	NM_005902.3	422	tCc/tAc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	73	652	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347917	73347917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs202067860		P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	30	257	0	ENST00000377767.4:c.1144C>T	p.Arg382Ter	p.R382*	ENST00000377767	NM_014953.3	382	Cga/Tga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922817	44922826	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGCCTGCC	CCTGCCTGCC	-			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	26	208	0	ENST00000377967.4:c.1679_1688del	p.Pro560LeufsTer30	p.P560Lfs*30	ENST00000377967	NM_021140.2	560	CCTGCCTGCCct/ct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540391	187540391	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	25	402	0	ENST00000441802.2:c.7349C>G	p.Ser2450Ter	p.S2450*	ENST00000441802	NM_005245.3	2450	tCa/tGa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041603	47041603	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	29	357	0	ENST00000329236.7:c.1597del	p.Glu533ArgfsTer93	p.E533Rfs*93	ENST00000329236	NM_001204466.1	532	Ggg/gg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729222	66729222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	45	477	0	ENST00000307102.5:c.430G>C	p.Glu144Gln	p.E144Q	ENST00000307102	NM_002755.3	144	Gag/Cag																																																																														
CIC	23152	MSKCC	GRCh37	19	42798378	42798378	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778167932		P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	59	703	0	ENST00000575354.2:c.4249C>T	p.Arg1417Cys	p.R1417C	ENST00000575354	NM_015125.3	1417	Cgc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938440	76938440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	36	226	0	ENST00000373344.5:c.2308C>G	p.Gln770Glu	p.Q770E	ENST00000373344	NM_000489.3	770	Cag/Gag																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200485	67200485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	65	683	0	ENST00000312629.5:c.679C>T	p.His227Tyr	p.H227Y	ENST00000312629	NM_003952.2	227	Cac/Tac																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186507007	186507007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	26	209	0	ENST00000323963.5:c.1173C>G	p.Phe391Leu	p.F391L	ENST00000323963		391	ttC/ttG																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200625	67200625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	48	755	0	ENST00000312629.5:c.736C>A	p.His246Asn	p.H246N	ENST00000312629	NM_003952.2	246	Cac/Aac																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201481	67201481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	65	703	0	ENST00000312629.5:c.922C>A	p.Pro308Thr	p.P308T	ENST00000312629	NM_003952.2	308	Ccc/Acc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201734	67201734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	46	523	0	ENST00000312629.5:c.1035C>G	p.Phe345Leu	p.F345L	ENST00000312629	NM_003952.2	345	ttC/ttG																																																																														
ATM	472	MSKCC	GRCh37	11	108170440	108170440	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	27	230	0	ENST00000278616.4:c.5006-1G>C		p.X1669_splice	ENST00000278616	NM_000051.3	1669																																																																															
ATM	472	MSKCC	GRCh37	11	108172389	108172389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	42	363	0	ENST00000278616.4:c.5192C>T	p.Ser1731Leu	p.S1731L	ENST00000278616	NM_000051.3	1731	tCa/tTa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480341	56480341	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	61	461	0	ENST00000267101.3:c.448G>C	p.Glu150Gln	p.E150Q	ENST00000267101	NM_001982.3	150	Gag/Cag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487185	56487185	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777498890		P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	60	436	0	ENST00000267101.3:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000267101	NM_001982.3	444	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010560	48010560	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587779920		P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	24	316	0	ENST00000234420.5:c.188C>A	p.Ser63Tyr	p.S63Y	ENST00000234420	NM_000179.2	63	tCc/tAc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39690066	39690066	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	24	212	0	ENST00000361337.2:c.91C>G	p.Arg31Gly	p.R31G	ENST00000361337	NM_003286.2	31	Cga/Gga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419961	41419961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	23	525	0	ENST00000373198.4:c.360G>C	p.Leu120Phe	p.L120F	ENST00000373198	NM_133170.3	120	ttG/ttC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178941944	178941944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	45	343	0	ENST00000263967.3:c.2263C>G	p.Leu755Val	p.L755V	ENST00000263967	NM_006218.2	755	Cta/Gta																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541358	187541358	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs367573644		P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	24	303	0	ENST00000441802.2:c.6382C>G	p.Gln2128Glu	p.Q2128E	ENST00000441802	NM_005245.3	2128	Caa/Gaa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509431	149509431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	46	679	0	ENST00000261799.4:c.1468G>C	p.Glu490Gln	p.E490Q	ENST00000261799	NM_002609.3	490	Gag/Cag																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38277050	38277050	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	22	425	0	ENST00000425967.3:c.1377+1G>T		p.X459_splice	ENST00000425967	NM_001174067.1	459																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741802	145741802	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs746487281		P-0039829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	79	700	0	ENST00000428558.2:c.701C>G	p.Ser234Cys	p.S234C	ENST00000428558	NM_004260.3	234	tCc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	143	327	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	618	636	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005429	29005429	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372354806		P-0039833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	109	271	0	ENST00000282397.4:c.832G>A	p.Val278Ile	p.V278I	ENST00000282397	NM_002019.4	278	Gta/Ata																																																																														
APC	324	MSKCC	GRCh37	5	112175217	112175217	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	110	188	0	ENST00000257430.4:c.3929del	p.Lys1310ArgfsTer11	p.K1310Rfs*11	ENST00000257430	NM_000038.5	1309	gAa/ga																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14014180	14014180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	156	476	0	ENST00000311895.7:c.158G>T	p.Cys53Phe	p.C53F	ENST00000311895	NM_005236.2	53	tGc/tTc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257943	19257943	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762715467		P-0039833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	271	843	0	ENST00000162023.5:c.443C>T	p.Pro148Leu	p.P148L	ENST00000162023		148	cCg/cTg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010562	48010562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587779921		P-0039833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	72	285	0	ENST00000234420.5:c.190G>A	p.Ala64Thr	p.A64T	ENST00000234420	NM_000179.2	64	Gcg/Acg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	432	623	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380254	25380254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	148	571	0	ENST00000256078.4:c.204G>T	p.Arg68Ser	p.R68S	ENST00000256078	NM_033360.2	68	agG/agT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271975	15271975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs567953412		P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	256	836	0	ENST00000263388.2:c.6464G>A	p.Gly2155Glu	p.G2155E	ENST00000263388	NM_000435.2	2155	gGa/gAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450292	50450292	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs374333820		P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	192	646	0	ENST00000331340.3:c.476A>G	p.Asn159Ser	p.N159S	ENST00000331340	NM_006060.4	159	aAc/aGc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724581	162724581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	98	613	0	ENST00000367921.3:c.353A>G	p.Tyr118Cys	p.Y118C	ENST00000367921	NM_006182.2	118	tAc/tGc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200485	67200486	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	553	793	0	ENST00000312629.5:c.680dup	p.His227GlnfsTer8	p.H227Qfs*8	ENST00000312629	NM_003952.2	227	cac/cAac																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572014	95572014	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	14	481	0	ENST00000343455.3:c.3093+1G>T		p.X1031_splice	ENST00000343455	NM_177438.2	1031																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828633	72828633	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs748108727		P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	79	828	0	ENST00000268489.5:c.7948C>A	p.Pro2650Thr	p.P2650T	ENST00000268489	NM_006885.3	2650	Ccg/Acg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234510	41234510	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660129		P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	76	613	0	ENST00000357654.3:c.4268G>T	p.Ser1423Ile	p.S1423I	ENST00000357654	NM_007294.3	1423	aGc/aTc																																																																														
SDHA	6389	MSKCC	GRCh37	5	251563	251563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	74	731	0	ENST00000264932.6:c.1774C>A	p.His592Asn	p.H592N	ENST00000264932	NM_004168.2	592	Cat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112174286	112174286	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	33	421	2	ENST00000257430.4:c.2995C>T	p.Gln999Ter	p.Q999*	ENST00000257430	NM_000038.5	999	Caa/Taa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048748	180048748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	276	871	0	ENST00000261937.6:c.1814C>T	p.Pro605Leu	p.P605L	ENST00000261937	NM_182925.4	605	cCg/cTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81336664	81336664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	16	210	0	ENST00000222390.5:c.1558G>A	p.Gly520Arg	p.G520R	ENST00000222390	NM_000601.4	520	Gga/Aga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs377767331		P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	123	517	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	221	518	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	436	796	2	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
APC	324	MSKCC	GRCh37	5	112155043	112155043	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	293	378	0	ENST00000257430.4:c.1312+2T>G		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937187	36937187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	67	778	2	ENST00000361632.4:c.1132T>C	p.Ser378Pro	p.S378P	ENST00000361632		378	Tca/Cca																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119045	70119045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	185	626	1	ENST00000245479.2:c.617C>T	p.Ala206Val	p.A206V	ENST00000245479	NM_000346.3	206	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378641	25378641	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	143	416	0	ENST00000256078.4:c.357T>G	p.Asp119Glu	p.D119E	ENST00000256078	NM_033360.2	119	gaT/gaG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs764146326		P-0039936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	198	721	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931589		P-0039936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	28	284	1	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022499	12022499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200351280		P-0039936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	78	620	0	ENST00000396373.4:c.605G>A	p.Arg202Gln	p.R202Q	ENST00000396373	NM_001987.4	202	cGg/cAg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	71873158	71873158	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	37	315	1	ENST00000357731.5:c.1036T>A	p.Phe346Ile	p.F346I	ENST00000357731	NM_173808.2	346	Ttc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	494	780	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5211656	5211656	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	174	774	0	ENST00000357368.4:c.5179A>T	p.Ile1727Phe	p.I1727F	ENST00000357368	NM_002850.3	1727	Atc/Ttc																																																																														
CASP8	841	MSKCC	GRCh37	2	202136330	202136330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	16	469	0	ENST00000358485.4:c.574C>G	p.Leu192Val	p.L192V	ENST00000358485	NM_001080125.1	192	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	231	790	0	ENST00000269305.4:c.281C>A	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tAa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897445	78897445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1334868419		P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	57	713	0	ENST00000306801.3:c.2780G>A	p.Arg927Gln	p.R927Q	ENST00000306801	NM_020761.2	927	cGg/cAg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143226689	143226689	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs149208667		P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	97	310	0	ENST00000262992.4:c.425G>A	p.Arg142Gln	p.R142Q	ENST00000262992	NM_001101669.1	142	cGa/cAa																																																																														
CDK4	1019	MSKCC	GRCh37	12	58143273	58143273	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	40	336	2	ENST00000257904.6:c.647G>C	p.Gly216Ala	p.G216A	ENST00000257904	NM_000075.3	216	gGa/gCa																																																																														
TET1	80312	MSKCC	GRCh37	10	70442624	70442624	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755430373		P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	96	476	0	ENST00000373644.4:c.4946G>A	p.Arg1649Gln	p.R1649Q	ENST00000373644	NM_030625.2	1649	cGg/cAg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	465622	465622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2724	171	563	0	ENST00000399788.2:c.754G>T	p.Ala252Ser	p.A252S	ENST00000399788	NM_001042603.1	252	Gca/Tca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18439796	18439796	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	29	339	0	ENST00000266497.5:c.694A>C	p.Ile232Leu	p.I232L	ENST00000266497		232	Att/Ctt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436322	110436322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	104	331	0	ENST00000375856.3:c.2079G>T	p.Arg693Ser	p.R693S	ENST00000375856	NM_003749.2	693	agG/agT																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987012	36987012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	176	582	0	ENST00000354822.5:c.677G>T	p.Ser226Ile	p.S226I	ENST00000354822	NM_001079668.2	226	aGc/aTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534319	63534549	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTCTCGGATCTGCTGCAGGCGCTCCTCCAGGCTGTGGCGGCTCTCCAACTCCAGCTTCAGCTTTTCCAGCCTCGAGATCAGCTCAGCTGCAAAGGTGGCGGGTTCCACGGGGGTCATCTCCTTGGGCAGGCGGTGGGTTCTCTACAGGACGTGGAAAGGAAAGGGAGGAGGCACGTTCAGCAGGCTAGGTGGGCGGTGGCTTGGCCGGAGCTTCCCGCACCAGGCGCTG	ACCTCTCGGATCTGCTGCAGGCGCTCCTCCAGGCTGTGGCGGCTCTCCAACTCCAGCTTCAGCTTTTCCAGCCTCGAGATCAGCTCAGCTGCAAAGGTGGCGGGTTCCACGGGGGTCATCTCCTTGGGCAGGCGGTGGGTTCTCTACAGGACGTGGAAAGGAAAGGGAGGAGGCACGTTCAGCAGGCTAGGTGGGCGGTGGCTTGGCCGGAGCTTCCCGCACCAGGCGCTG	-			P-0040032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	108	693	0	ENST00000307078.5:c.1060-88_1200+2del		p.X354_splice	ENST00000307078	NM_004655.3	354																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982038	70982038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040034-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			331	55	852	0	ENST00000276594.2:c.58G>A	p.Glu20Lys	p.E20K	ENST00000276594	NM_024504.3	20	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578487	7578488	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAACCC			P-0040034-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			68	133	959	0	ENST00000269305.4:c.437_442dup	p.Val147_Asp148insGlyVal	p.V147_D148insGV	ENST00000269305	NM_001126112.2	148	gat/gGGGTTGat																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36940993	36940993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040034-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			212	38	633	0	ENST00000361632.4:c.346G>A	p.Glu116Lys	p.E116K	ENST00000361632		116	Gag/Aag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210420	2210420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763560759		P-0040034-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			229	39	770	1	ENST00000398665.3:c.1027C>T	p.Arg343Cys	p.R343C	ENST00000398665	NM_032482.2	343	Cgc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0040039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	95	491	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs121913292		P-0040039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	40	491	0	ENST00000371953.3:c.389del	p.Arg130GlnfsTer4	p.R130Qfs*4	ENST00000371953	NM_000314.4	130	cGa/ca																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279674	123279674	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs77543610		P-0040039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	70	415	0	ENST00000358487.5:c.758C>G	p.Pro253Arg	p.P253R	ENST00000358487	NM_000141.4	253	cCt/cGt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591145	67591154	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TACTTGATGT	TACTTGATGT	-			P-0040039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	21	322	0	ENST00000274335.5:c.1738_1745+2del		p.X580_splice	ENST00000274335		580																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCGGGTGAGAGTGGCG			P-0040039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	79	681	0	ENST00000304494.5:c.225_243dup	p.Val82ArgfsTer44	p.V82Rfs*44	ENST00000304494	NM_000077.4	81	-/CGCCACTCTCACCCGACCC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCGGGTGAGAGTGGCG			P-0040039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	79	681	0	ENST00000304494.5:c.225_243dup	p.Val82ArgfsTer44	p.V82Rfs*44	ENST00000304494	NM_000077.4	81	-/CGCCACTCTCACCCGACCC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCGGGTGAGAGTGGCG			P-0040039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	79	681	0	ENST00000304494.5:c.225_243dup	p.Val82ArgfsTer44	p.V82Rfs*44	ENST00000304494	NM_000077.4	81	-/CGCCACTCTCACCCGACCC																																																																														
TERT	7015	MSKCC	GRCh37	5	1278886	1278886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	145	714	3	ENST00000310581.5:c.2156C>A	p.Thr719Asn	p.T719N	ENST00000310581	NM_198253.2	719	aCc/aAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591265	67591265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	72	455	0	ENST00000274335.5:c.1763G>A	p.Gly588Asp	p.G588D	ENST00000274335		588	gGt/gAt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371753	55371761	+	inframe_deletion	In_Frame_Del	DEL	TGAAGCGGG	TGAAGCGGG	-			P-0040039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	34	461	0	ENST00000297316.4:c.445_453del	p.Lys149_Val151del	p.K149_V151del	ENST00000297316	NM_022454.3	148	cTGAAGCGGGtg/ctg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913403		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	166	312	0	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	236	494	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106094	8106094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	196	428	0	ENST00000346208.3:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000346208		305	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	115	317	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	178	346	1	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	128	280	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720870	89720870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	177	276	1	ENST00000371953.3:c.1021T>G	p.Phe341Val	p.F341V	ENST00000371953	NM_000314.4	341	Ttt/Gtt																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519943		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	251	426	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	197	468	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1458799446		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	314	632	1	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	246	489	1	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001303	29001303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201407326		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	149	239	0	ENST00000282397.4:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000282397	NM_002019.4	477	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259962	16259962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	317	560	0	ENST00000375759.3:c.7227G>T	p.Glu2409Asp	p.E2409D	ENST00000375759	NM_015001.2	2409	gaG/gaT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987413	2987413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	197	365	0	ENST00000396946.4:c.16C>T	p.Pro6Ser	p.P6S	ENST00000396946	NM_032415.4	6	Cca/Tca																																																																														
PGR	5241	MSKCC	GRCh37	11	100996829	100996829	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	109	479	0	ENST00000325455.5:c.1698T>G	p.Ile566Met	p.I566M	ENST00000325455	NM_001202474.3	566	atT/atG																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280068	66280068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	111	208	0	ENST00000273854.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000273854	NM_004439.5	541	Cga/Tga																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	179	452	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134594	41134594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	153	360	0	ENST00000379561.5:c.1034C>A	p.Ser345Tyr	p.S345Y	ENST00000379561	NM_002015.3	345	tCt/tAt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88677032	88677032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782400		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	149	289	0	ENST00000372037.3:c.817C>T	p.Arg273Ter	p.R273*	ENST00000372037	NM_004329.2	273	Cga/Tga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53250046	53250046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	266	601	0	ENST00000375401.3:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000375401	NM_004187.3	68	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858746	9858746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	129	270	0	ENST00000330684.3:c.2655C>A	p.Phe885Leu	p.F885L	ENST00000330684	NM_001134407.1	885	ttC/ttA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690814	89690814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	110	244	0	ENST00000371953.3:c.221G>T	p.Arg74Ile	p.R74I	ENST00000371953	NM_000314.4	74	aGa/aTa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685312	86685312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	171	121	0	ENST00000274376.6:c.3028C>T	p.Arg1010Ter	p.R1010*	ENST00000274376	NM_002890.2	1010	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636719	176636719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140095431		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	189	336	0	ENST00000439151.2:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000439151	NM_022455.4	440	cGa/cAa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845627	63845627	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	95	169	0	ENST00000279873.7:c.1366G>T	p.Glu456Ter	p.E456*	ENST00000279873	NM_032199.2	456	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827580	72827580	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	304	601	0	ENST00000268489.5:c.9001G>T	p.Glu3001Ter	p.E3001*	ENST00000268489	NM_006885.3	3001	Gaa/Taa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317559	1317559	+	downstream_gene_variant	3'Flank	SNP	T	T	C			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	170	380	0				ENST00000381566																																																																																	
CTLA4	1493	MSKCC	GRCh37	2	204736142	204736142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	158	310	0	ENST00000302823.3:c.499C>A	p.Leu167Ile	p.L167I	ENST00000302823	NM_005214.4	167	Ctt/Att																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262885	46262885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761607812		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	228	362	1	ENST00000371998.3:c.1058G>A	p.Arg353Gln	p.R353Q	ENST00000371998		353	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108165729	108165729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs762083530		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	19	294	0	ENST00000278616.4:c.4852C>T	p.Arg1618Ter	p.R1618*	ENST00000278616	NM_000051.3	1618	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	461462	461462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	95	383	0	ENST00000399788.2:c.1058G>A	p.Gly353Glu	p.G353E	ENST00000399788	NM_001042603.1	353	gGa/gAa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134924	41134924	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	115	283	0	ENST00000379561.5:c.704C>A	p.Ser235Tyr	p.S235Y	ENST00000379561	NM_002015.3	235	tCt/tAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76890120	76890120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	26	413	0	ENST00000373344.5:c.4774C>A	p.Leu1592Ile	p.L1592I	ENST00000373344	NM_000489.3	1592	Ctt/Att																																																																														
NF2	4771	MSKCC	GRCh37	22	30064380	30064380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	227	454	0	ENST00000338641.4:c.944C>A	p.Ser315Tyr	p.S315Y	ENST00000338641	NM_000268.3	315	tCt/tAt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73355047	73355047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	123	371	0	ENST00000377767.4:c.323G>A	p.Arg108His	p.R108H	ENST00000377767	NM_014953.3	108	cGc/cAc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182679046	182679046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	26	295	0	ENST00000292782.4:c.488A>G	p.Asn163Ser	p.N163S	ENST00000292782	NM_020640.2	163	aAt/aGt																																																																														
B2M	567	MSKCC	GRCh37	15	45007719	45007719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	285	274	0	ENST00000558401.1:c.166G>T	p.Glu56Ter	p.E56*	ENST00000558401	NM_004048.2	56	Gaa/Taa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38958874	38958874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	68	200	0	ENST00000357387.3:c.2238C>A	p.Phe746Leu	p.F746L	ENST00000357387	NM_152756.3	746	ttC/ttA																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264407	46264407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs529456958		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	189	348	1	ENST00000371998.3:c.1454G>A	p.Arg485His	p.R485H	ENST00000371998		485	cGt/cAt																																																																														
AXL	558	MSKCC	GRCh37	19	41749576	41749576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771047905		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	354	614	0	ENST00000301178.4:c.1501C>T	p.Arg501Cys	p.R501C	ENST00000301178	NM_021913.4	501	Cgc/Tgc																																																																														
RET	5979	MSKCC	GRCh37	10	43619124	43619124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	224	476	0	ENST00000355710.3:c.2807C>A	p.Ser936Tyr	p.S936Y	ENST00000355710	NM_020975.4	936	tCt/tAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911583	131911583	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	107	247	0	ENST00000265335.6:c.328G>T	p.Glu110Ter	p.E110*	ENST00000265335		110	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175924	112175924	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	116	188	0	ENST00000257430.4:c.4633T>G	p.Ser1545Ala	p.S1545A	ENST00000257430	NM_000038.5	1545	Tca/Gca																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300870	137300870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1174764642		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	414	675	1	ENST00000481739.1:c.515G>A	p.Arg172His	p.R172H	ENST00000481739	NM_002957.4	172	cGc/cAc																																																																														
TET2	54790	MSKCC	GRCh37	4	106158129	106158129	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs770136804		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	18	275	1	ENST00000380013.4:c.3030G>T	p.Glu1010Asp	p.E1010D	ENST00000380013	NM_001127208.2	1010	gaG/gaT																																																																														
MET	4233	MSKCC	GRCh37	7	116423427	116423427	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	15	263	0	ENST00000397752.3:c.3702C>A	p.Tyr1234Ter	p.Y1234*	ENST00000397752	NM_000245.2	1234	taC/taA																																																																														
CASP8	841	MSKCC	GRCh37	2	202131183	202131183	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	98	231	0	ENST00000358485.4:c.152-1G>T		p.X51_splice	ENST00000358485	NM_001080125.1	51																																																																															
SESN2	83667	MSKCC	GRCh37	1	28605706	28605706	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143630873		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	255	587	0	ENST00000253063.3:c.1310G>A	p.Arg437Gln	p.R437Q	ENST00000253063	NM_031459.4	437	cGa/cAa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43773135	43773135	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	233	538	0	ENST00000382044.4:c.457G>T	p.Glu153Ter	p.E153*	ENST00000382044	NM_001141980.1	153	Gaa/Taa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286951	33286951	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1453165364		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	219	540	0	ENST00000374542.5:c.1986G>T	p.Lys662Asn	p.K662N	ENST00000374542	NM_001141970.1	662	aaG/aaT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779545	3779545	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	449	972	0	ENST00000262367.5:c.5503G>T	p.Glu1835Ter	p.E1835*	ENST00000262367	NM_004380.2	1835	Gaa/Taa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225400336	225400336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	88	149	0	ENST00000264414.4:c.287C>A	p.Ser96Ter	p.S96*	ENST00000264414	NM_003590.4	96	tCa/tAa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608234	28608234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	210	450	0	ENST00000241453.7:c.1822G>T	p.Glu608Ter	p.E608*	ENST00000241453	NM_004119.2	608	Gaa/Taa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256940	16256940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	248	490	0	ENST00000375759.3:c.4205C>A	p.Ser1402Tyr	p.S1402Y	ENST00000375759	NM_015001.2	1402	tCt/tAt																																																																														
CDC42	998	MSKCC	GRCh37	1	22413222	22413222	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	38	92	0	ENST00000344548.3:c.349A>G	p.Ile117Val	p.I117V	ENST00000344548	NM_001039802.1	117	Att/Gtt																																																																														
NEGR1	257194	MSKCC	GRCh37	1	71873204	71873204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	147	386	0	ENST00000357731.5:c.990C>A	p.Phe330Leu	p.F330L	ENST00000357731	NM_173808.2	330	ttC/ttA																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577215	64577215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	359	697	2	ENST00000337652.1:c.367G>A	p.Asp123Asn	p.D123N	ENST00000337652	NM_130803.2	123	Gat/Aat																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497558	125497558	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	16	223	0	ENST00000428830.2:c.122A>G	p.Asp41Gly	p.D41G	ENST00000428830	NM_001114121.2	41	gAt/gGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420510	49420510	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	292	614	0	ENST00000301067.7:c.15239T>C	p.Val5080Ala	p.V5080A	ENST00000301067	NM_003482.3	5080	gTg/gCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426758	49426758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	122	295	0	ENST00000301067.7:c.11730G>T	p.Gln3910His	p.Q3910H	ENST00000301067	NM_003482.3	3910	caG/caT																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50488303	50488303	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs750857733		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	263	425	0	ENST00000394963.4:c.1217C>A	p.Ser406Tyr	p.S406Y	ENST00000394963	NM_003076.4	406	tCt/tAt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28931823	28931823	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	129	241	2	ENST00000282397.4:c.2117-1G>T		p.X706_splice	ENST00000282397	NM_002019.4	706																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893334	32893334	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	151	291	0	ENST00000380152.3:c.188A>G	p.Lys63Arg	p.K63R	ENST00000380152		63	aAa/aGa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944669	32944669	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	85	359	0	ENST00000380152.3:c.8462T>G	p.Ile2821Ser	p.I2821S	ENST00000380152		2821	aTt/aGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788582	3788582	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	178	328	0	ENST00000262367.5:c.4372T>G	p.Leu1458Val	p.L1458V	ENST00000262367	NM_004380.2	1458	Tta/Gta																																																																														
FANCA	2175	MSKCC	GRCh37	16	89833553	89833553	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	161	331	0	ENST00000389301.3:c.2597A>C	p.Lys866Thr	p.K866T	ENST00000389301	NM_000135.2	866	aAa/aCa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40447704	40447704	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	291	510	0	ENST00000345506.4:c.443T>G	p.Phe148Cys	p.F148C	ENST00000345506	NM_003152.3	148	tTt/tGt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39613922	39613922	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	112	209	0	ENST00000262039.4:c.1839+1G>T		p.X613_splice	ENST00000262039	NM_002647.2	613																																																																															
JAK3	3718	MSKCC	GRCh37	19	17951134	17951134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs745373403		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	341	580	0	ENST00000458235.1:c.1159A>G	p.Asn387Asp	p.N387D	ENST00000458235	NM_000215.3	387	Aac/Gac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212425	36212425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	100	700	0	ENST00000222270.7:c.2176G>A	p.Ala726Thr	p.A726T	ENST00000222270	NM_014727.1	726	Gct/Act																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867752	45867752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	381	896	0	ENST00000391945.4:c.648G>T	p.Lys216Asn	p.K216N	ENST00000391945	NM_000400.3	216	aaG/aaT																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213125	39213125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	419	849	0	ENST00000402219.2:c.3842A>G	p.Glu1281Gly	p.E1281G	ENST00000402219	NM_005633.3	1281	gAa/gGa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026864	71026864	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1251323482		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	81	247	1	ENST00000318789.4:c.1358C>T	p.Ala453Val	p.A453V	ENST00000318789	NM_032682.5	453	gCg/gTg																																																																														
ATR	545	MSKCC	GRCh37	3	142188318	142188318	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	149	330	0	ENST00000350721.4:c.6413T>G	p.Phe2138Cys	p.F2138C	ENST00000350721	NM_001184.3	2138	tTt/tGt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553645	106553645	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752218761		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	165	352	1	ENST00000369096.4:c.1610C>T	p.Ala537Val	p.A537V	ENST00000369096	NM_001198.3	537	gCg/gTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677843	117677843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	42	213	0	ENST00000368508.3:c.4090G>A	p.Asp1364Asn	p.D1364N	ENST00000368508	NM_002944.2	1364	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709180	117709180	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1330973277		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	120	269	0	ENST00000368508.3:c.1777G>T	p.Asp593Tyr	p.D593Y	ENST00000368508	NM_002944.2	593	Gat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331622	8331622	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	213	413	0	ENST00000356435.5:c.5494G>T	p.Glu1832Ter	p.E1832*	ENST00000356435		1832	Gaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485786	8485786	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	105	240	0	ENST00000356435.5:c.3031T>G	p.Phe1011Val	p.F1011V	ENST00000356435		1011	Ttc/Gtc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135796793	135796793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	141	256	0	ENST00000298552.3:c.694G>A	p.Glu232Lys	p.E232K	ENST00000298552	NM_001162426.1	232	Gaa/Aaa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314934	1314934	+	downstream_gene_variant	3'Flank	SNP	T	T	G			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	223	449	0				ENST00000381566																																																																																	
ATRX	546	MSKCC	GRCh37	X	76814197	76814197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	17	289	0	ENST00000373344.5:c.6447C>A	p.Phe2149Leu	p.F2149L	ENST00000373344	NM_000489.3	2149	ttC/ttA																																																																														
CD276	80381	MSKCC	GRCh37	15	73995286	73995286	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765808662		P-0040086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	16	49	0	ENST00000318443.5:c.592G>A	p.Glu198Lys	p.E198K	ENST00000318443	NM_001024736.1	198	Gag/Aag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	74	469	0	ENST00000347630.2:c.373T>A	p.Phe125Ile	p.F125I	ENST00000347630	NM_001007230.1	125	Ttt/Att																																																																														
SOS1	6654	MSKCC	GRCh37	2	39251241	39251241	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	55	475	2	ENST00000402219.2:c.1112A>T	p.Glu371Val	p.E371V	ENST00000402219	NM_005633.3	371	gAa/gTa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984130	2984130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	150	473	0	ENST00000396946.4:c.400G>A	p.Glu134Lys	p.E134K	ENST00000396946	NM_032415.4	134	Gag/Aag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121438948	121438948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146855738		P-0040094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	258	787	0	ENST00000257555.6:c.1849G>A	p.Val617Ile	p.V617I	ENST00000257555		617	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	434	622	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251911	153251911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	160	328	0	ENST00000281708.4:c.1095G>T	p.Trp365Cys	p.W365C	ENST00000281708	NM_033632.3	365	tgG/tgT																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366884	15366884	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	136	330	0	ENST00000263377.2:c.1742G>C	p.Ser581Thr	p.S581T	ENST00000263377	NM_058243.2	581	aGc/aCc																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	89	390	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	90	288	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	85	416	2	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	161	738	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	135	419	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	123	545	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	71	413	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	142	389	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	156	851	5	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332273	70332273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	30	445	1	ENST00000373644.4:c.184del	p.Thr62GlnfsTer13	p.T62Qfs*13	ENST00000373644	NM_030625.2	60	Aaa/aa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287315	46287315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	82	465	0	ENST00000334344.6:c.5260C>T	p.Arg1754Ter	p.R1754*	ENST00000334344	NM_152641.2	1754	Cga/Tga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	96	816	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	109	601	0	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	84	735	3	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161939	47161939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	25	363	0	ENST00000409792.3:c.4187del	p.Asn1396MetfsTer16	p.N1396Mfs*16	ENST00000409792	NM_014159.6	1396	aAt/at																																																																														
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	55	399	2	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211461	46211461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	84	165	1	ENST00000334344.6:c.427C>T	p.Arg143Cys	p.R143C	ENST00000334344	NM_152641.2	143	Cgt/Tgt																																																																														
SMO	6608	MSKCC	GRCh37	7	128850945	128850945	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762491039		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	130	570	0	ENST00000249373.3:c.1792G>A	p.Gly598Arg	p.G598R	ENST00000249373	NM_005631.4	598	Ggg/Agg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73342925	73342925	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs774491006		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	20	156	0	ENST00000377767.4:c.1881del	p.Ala629LeufsTer2	p.A629Lfs*2	ENST00000377767	NM_014953.3	627	aaA/aa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44733177	44733177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	91	610	0	ENST00000377967.4:c.169T>C	p.Phe57Leu	p.F57L	ENST00000377967	NM_021140.2	57	Ttt/Ctt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	70	750	4	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	45	460	6	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5050833	5050833	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	48	405	0	ENST00000381652.3:c.614+2T>C		p.X205_splice	ENST00000381652	NM_004972.3	205																																																																															
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs774532876		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	97	843	3	ENST00000294008.3:c.1406del	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993351	72993351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752231847		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	204	779	1	ENST00000268489.5:c.694C>T	p.Arg232Cys	p.R232C	ENST00000268489	NM_006885.3	232	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444378	49444378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	142	720	2	ENST00000301067.7:c.2993del	p.Pro998LeufsTer2	p.P998Lfs*2	ENST00000301067	NM_003482.3	998	cCt/ct																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	96	627	2	ENST00000263377.2:c.766del	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932400	36932400	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764345289		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	140	665	1	ENST00000361632.4:c.2069C>T	p.Thr690Met	p.T690M	ENST00000361632		690	aCg/aTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	102	474	5	ENST00000262367.5:c.3250dup	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123260369	123260369	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770309121		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	57	588	2	ENST00000358487.5:c.1532C>T	p.Ala511Val	p.A511V	ENST00000358487	NM_000141.4	511	gCg/gTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	97	365	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478781	57478781	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769546153		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	117	466	0	ENST00000371085.3:c.367G>A	p.Glu123Lys	p.E123K	ENST00000371085	NM_000516.4	123	Gag/Aag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739893	145739893	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377298374		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	70	645	2	ENST00000428558.2:c.1637C>T	p.Pro546Leu	p.P546L	ENST00000428558	NM_004260.3	546	cCg/cTg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037492	12037492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	43	395	0	ENST00000396373.4:c.1123G>A	p.Gly375Arg	p.G375R	ENST00000396373	NM_001987.4	375	Gga/Aga																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090086	37090086	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63751310		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	163	543	2	ENST00000231790.2:c.1975C>T	p.Arg659Ter	p.R659*	ENST00000231790	NM_000249.3	659	Cga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945604	71945604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	40	640	0	ENST00000298229.2:c.2360G>A	p.Ser787Asn	p.S787N	ENST00000298229	NM_001567.3	787	aGc/aAc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486803	56486803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	144	620	0	ENST00000267101.3:c.1217T>C	p.Met406Thr	p.M406T	ENST00000267101	NM_001982.3	406	aTg/aCg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562564	21562564	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1452154404		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	42	228	0	ENST00000382592.4:c.1355C>T	p.Pro452Leu	p.P452L	ENST00000382592	NM_014572.2	452	cCg/cTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912870	32912870	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	23	268	0	ENST00000380152.3:c.4381del	p.Ser1461ProfsTer2	p.S1461Pfs*2	ENST00000380152		1460	Ttt/tt																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630434	90630434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	173	623	0	ENST00000330062.3:c.877A>G	p.Met293Val	p.M293V	ENST00000330062	NM_002168.2	293	Atg/Gtg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343582	343582	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	73	722	0	ENST00000262320.3:c.2092del	p.His698ThrfsTer7	p.H698Tfs*7	ENST00000262320	NM_003502.3	698	Cac/ac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900335	3900335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199768244		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	144	686	0	ENST00000262367.5:c.761C>T	p.Ala254Val	p.A254V	ENST00000262367	NM_004380.2	254	gCg/gTg																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134499	30134499	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	35	298	1	ENST00000263025.4:c.32del	p.Gly11AlafsTer21	p.G11Afs*21	ENST00000263025	NM_002746.2	11	gGc/gc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973799	15973799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	120	453	2	ENST00000268712.3:c.4193C>T	p.Ala1398Val	p.A1398V	ENST00000268712	NM_006311.3	1398	gCc/gTc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40457682	40457682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	51	626	0	ENST00000345506.4:c.1435A>G	p.Thr479Ala	p.T479A	ENST00000345506	NM_003152.3	479	Acg/Gcg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58677806	58677806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	60	610	0	ENST00000305921.3:c.31G>A	p.Val11Ile	p.V11I	ENST00000305921	NM_003620.3	11	Gtc/Atc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208330	5208330	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	167	772	1	ENST00000357368.4:c.5560del	p.Glu1854ArgfsTer59	p.E1854Rfs*59	ENST00000357368	NM_002850.3	1854	Gag/ag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223287	5223287	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758410040		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	194	778	0	ENST00000357368.4:c.2516C>T	p.Ser839Leu	p.S839L	ENST00000357368	NM_002850.3	839	tCg/tTg																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627664	14627664	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753013282		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	70	665	0	ENST00000254322.2:c.406A>G	p.Met136Val	p.M136V	ENST00000254322	NM_006145.1	136	Atg/Gtg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855832	45855832	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761085729		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	193	755	0	ENST00000391945.4:c.1978G>A	p.Ala660Thr	p.A660T	ENST00000391945	NM_000400.3	660	Gcg/Acg																																																																														
ALK	238	MSKCC	GRCh37	2	29754967	29754969	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	117	586	0	ENST00000389048.3:c.966_968del	p.Leu323del	p.L323del	ENST00000389048	NM_004304.4	322	ctTCTc/ctc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172080	99172080	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	54	619	0	ENST00000074304.5:c.1646T>C	p.Leu549Pro	p.L549P	ENST00000074304	NM_001134224.1	549	cTg/cCg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39725894	39725894	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	41	428	1	ENST00000361337.2:c.765A>T	p.Glu255Asp	p.E255D	ENST00000361337	NM_003286.2	255	gaA/gaT																																																																														
EP300	2033	MSKCC	GRCh37	22	41574718	41574718	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780778684		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	75	819	1	ENST00000263253.7:c.7003C>T	p.Pro2335Ser	p.P2335S	ENST00000263253	NM_001429.3	2335	Cct/Tct																																																																														
ATR	545	MSKCC	GRCh37	3	142176486	142176486	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	58	411	0	ENST00000350721.4:c.7615A>G	p.Thr2539Ala	p.T2539A	ENST00000350721	NM_001184.3	2539	Aca/Gca																																																																														
ATR	545	MSKCC	GRCh37	3	142279124	142279124	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	37	287	0	ENST00000350721.4:c.1522T>C	p.Ser508Pro	p.S508P	ENST00000350721	NM_001184.3	508	Tct/Cct																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806576	1806576	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	86	715	0	ENST00000260795.2:c.1292T>C	p.Met431Thr	p.M431T	ENST00000260795		431	aTg/aCg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807381	1807381	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762781471		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	74	696	0	ENST00000260795.2:c.1630G>A	p.Ala544Thr	p.A544T	ENST00000260795		544	Gcc/Acc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749424	41749424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	59	487	0	ENST00000226382.2:c.371A>G	p.Asp124Gly	p.D124G	ENST00000226382	NM_003924.3	124	gAc/gGc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955571	55955571	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1380184007		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	42	424	0	ENST00000263923.4:c.3374T>C	p.Met1125Thr	p.M1125T	ENST00000263923	NM_002253.2	1125	aTg/aCg																																																																														
FAM175A	0	MSKCC	GRCh37	4	84383659	84383659	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	118	432	0	ENST00000321945.7:c.1193A>C	p.Lys398Thr	p.K398T	ENST00000321945	NM_139076.2	398	aAg/aCg																																																																														
TET2	54790	MSKCC	GRCh37	4	106157863	106157863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	29	392	2	ENST00000380013.4:c.2764C>T	p.His922Tyr	p.H922Y	ENST00000380013	NM_001127208.2	922	Cat/Tat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31401588	31401588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	171	551	0	ENST00000344624.3:c.4076G>T	p.Arg1359Ile	p.R1359I	ENST00000344624		1359	aGa/aTa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876506	35876506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	124	598	0	ENST00000303115.3:c.1298A>G	p.Gln433Arg	p.Q433R	ENST00000303115	NM_002185.3	433	cAg/cGg																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402725	20402726	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	117	427	0	ENST00000346618.3:c.267dup	p.Gly90ArgfsTer77	p.G90Rfs*77	ENST00000346618	NM_001949.4	88	gcc/gCcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967948	93967948	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	107	459	0	ENST00000369303.4:c.1979T>G	p.Val660Gly	p.V660G	ENST00000369303	NM_004440.3	660	gTt/gGt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536107	106536107	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779091345		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	75	347	0	ENST00000369096.4:c.74G>T	p.Arg25Met	p.R25M	ENST00000369096	NM_001198.3	25	aGg/aTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976700	2976700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	153	570	1	ENST00000396946.4:c.1312C>A	p.Leu438Ile	p.L438I	ENST00000396946	NM_032415.4	438	Ctc/Atc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467717	50467717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	151	724	0	ENST00000331340.3:c.952G>A	p.Ala318Thr	p.A318T	ENST00000331340	NM_006060.4	318	Gcc/Acc																																																																														
SMO	6608	MSKCC	GRCh37	7	128845625	128845625	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	85	416	0	ENST00000249373.3:c.920+2T>C		p.X307_splice	ENST00000249373	NM_005631.4	307																																																																															
WHSC1L1	0	MSKCC	GRCh37	8	38186934	38186934	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	43	594	0	ENST00000317025.8:c.1543del	p.Asp515MetfsTer21	p.D515Mfs*21	ENST00000317025	NM_023034.1	515	Gat/at																																																																														
AGO2	27161	MSKCC	GRCh37	8	141582948	141582948	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	210	709	0	ENST00000220592.5:c.299T>C	p.Leu100Pro	p.L100P	ENST00000220592	NM_012154.3	100	cTa/cCa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741253	145741253	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs533978275		P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	91	789	0	ENST00000428558.2:c.1153A>G	p.Lys385Glu	p.K385E	ENST00000428558	NM_004260.3	385	Aag/Gag																																																																														
ABL1	25	MSKCC	GRCh37	9	133760907	133760907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	102	810	0	ENST00000318560.5:c.3230T>C	p.Met1077Thr	p.M1077T	ENST00000318560	NM_005157.4	1077	aTg/aCg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393439	139393439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	154	668	0	ENST00000277541.6:c.6092C>A	p.Ala2031Asp	p.A2031D	ENST00000277541	NM_017617.3	2031	gCc/gAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409748	139409748	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	93	680	0	ENST00000277541.6:c.2008T>C	p.Tyr670His	p.Y670H	ENST00000277541	NM_017617.3	670	Tac/Cac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44919375	44919375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	43	362	0	ENST00000377967.4:c.1303C>T	p.Gln435Ter	p.Q435*	ENST00000377967	NM_021140.2	435	Cag/Tag																																																																														
VHL	7428	MSKCC	GRCh37	3	10183764	10183764	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs5030804		P-0040167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	228	676	0	ENST00000256474.2:c.233A>G	p.Asn78Ser	p.N78S	ENST00000256474	NM_000551.3	78	aAt/aGt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537897	212537898	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0040167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	101	552	0	ENST00000342788.4:c.1707_1708delinsAT	p.Cys569_His570delinsTer	p.C569_H570delins*	ENST00000342788	NM_005235.2	569	tgCCat/tgATat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163371	47163371	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	51	368	0	ENST00000409792.3:c.2755G>T	p.Glu919Ter	p.E919*	ENST00000409792	NM_014159.6	919	Gag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52713654	52713654	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	152	568	0	ENST00000394830.3:c.74del	p.Ser25LeufsTer20	p.S25Lfs*20	ENST00000394830	NM_018313.4	25	tCt/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0040207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	197	834	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939102	36939102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	113	958	0	ENST00000361632.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000361632		203	Gtg/Ttg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481806	56481806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	110	558	0	ENST00000267101.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000267101	NM_001982.3	245	gCc/gTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	101	274	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888210	112888210	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121918464		P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	69	477	0	ENST00000351677.2:c.226G>A	p.Glu76Lys	p.E76K	ENST00000351677	NM_002834.3	76	Gag/Aag																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223740		P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	107	518	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	75	316	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045829	26045829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	40	485	0	ENST00000540144.1:c.191G>A	p.Arg64Gln	p.R64Q	ENST00000540144	NM_003531.2	64	cGg/cAg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120258	70120259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	309	659	1	ENST00000245479.2:c.1261dup	p.Ser421LysfsTer157	p.S421Kfs*157	ENST00000245479	NM_000346.3	420	-/A																																																																														
ATM	472	MSKCC	GRCh37	11	108214065	108214074	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCAGTGCC	TTTCAGTGCC	-	rs1300297318		P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	32	321	0	ENST00000278616.4:c.8395_8404del	p.Phe2799LysfsTer4	p.F2799Kfs*4	ENST00000278616	NM_000051.3	2795	gaTTTCAGTGCC/ga																																																																														
KDR	3791	MSKCC	GRCh37	4	55955592	55955592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs560674167		P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	58	420	0	ENST00000263923.4:c.3353G>A	p.Arg1118Gln	p.R1118Q	ENST00000263923	NM_002253.2	1118	cGa/cAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68981315	68981315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866864487		P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	25	283	0	ENST00000288368.4:c.1387C>T	p.Arg463Cys	p.R463C	ENST00000288368	NM_024870.2	463	Cgc/Tgc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978499	70978499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141769540		P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	85	369	0	ENST00000276594.2:c.1154C>T	p.Pro385Leu	p.P385L	ENST00000276594	NM_024504.3	385	cCg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087097	27087361	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGAACCCAGGAGTCAGAGGTTGCGATGAGCCGAGACGTGCCATTGCACTCCAGCCTGGGCAACGAGTGAAACACTGTCTCAAAAAAAAAAATTTTTTTTTTTAATAAAAATAGTATCATGACTAAAGAACGTGTGTGATGTATTTGCTCTTGGTTGTTTAAGGAAAATGCTAAGCAAGTAGTAGGATTATTGAAAGTAGAATCTTTCTGCCTAATATTACTAATCCATGTTCTTATATATATGTTCTAGGATCTATCTGGTTCA	TTGAACCCAGGAGTCAGAGGTTGCGATGAGCCGAGACGTGCCATTGCACTCCAGCCTGGGCAACGAGTGAAACACTGTCTCAAAAAAAAAAATTTTTTTTTTTAATAAAAATAGTATCATGACTAAAGAACGTGTGTGATGTATTTGCTCTTGGTTGTTTAAGGAAAATGCTAAGCAAGTAGTAGGATTATTGAAAGTAGAATCTTTCTGCCTAATATTACTAATCCATGTTCTTATATATATGTTCTAGGATCTATCTGGTTCA	-			P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	50	16	0	ENST00000324856.7:c.1921-250_1935del		p.X641_splice	ENST00000324856	NM_006015.4	641																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36937223	36937223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768170625		P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	148	622	2	ENST00000361632.4:c.1096G>A	p.Gly366Arg	p.G366R	ENST00000361632		366	Gga/Aga																																																																														
B2M	567	MSKCC	GRCh37	15	45007394	45007681	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCATGTATAGAGGAATTATGAGGGAAAGATACCAAGTCACGGTTTATTCTTCAAAATGGAGGTGGCTTGTTGGGAAGGTGGAAGCTCATTTGGCCAGAGTGGAAATGGAATTGGGAGAAATCGATGACCAAATGTAAACACTTGGTGCCTGATATAGCTTGACACCAAGTTAGCCCCAAGTGAAATACCCTGGCAATATTAATGTGTCTTTTCCCGATATTCCTCAGGTACTCCAAAGATTCAGGTTTACTCACGTCATCCAGCAGAGAATGGAAAGTCAAATTTCCT	GCATGTATAGAGGAATTATGAGGGAAAGATACCAAGTCACGGTTTATTCTTCAAAATGGAGGTGGCTTGTTGGGAAGGTGGAAGCTCATTTGGCCAGAGTGGAAATGGAATTGGGAGAAATCGATGACCAAATGTAAACACTTGGTGCCTGATATAGCTTGACACCAAGTTAGCCCCAAGTGAAATACCCTGGCAATATTAATGTGTCTTTTCCCGATATTCCTCAGGTACTCCAAAGATTCAGGTTTACTCACGTCATCCAGCAGAGAATGGAAAGTCAAATTTCCT	-			P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			9	35	27	0	ENST00000558401.1:c.68-226_129del		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346992	89346993	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0040218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	79	441	0	ENST00000301030.4:c.5957_5958del	p.Arg1986IlefsTer45	p.R1986Ifs*45	ENST00000301030	NM_001256183.1	1986	aGA/a																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	12	200	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	81	526	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	41	203	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	48	265	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913285		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	16	241	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	104	692	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	73	248	0	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs79184941		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	18	313	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092740	27092740	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	74	288	0	ENST00000324856.7:c.2765del	p.Gly922AlafsTer2	p.G922Afs*2	ENST00000324856	NM_006015.4	921	Ggg/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	35	325	1	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	86	312	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	46	474	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286237	66286238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	35	163	0	ENST00000273854.3:c.1448dup	p.Asn483LysfsTer21	p.N483Kfs*21	ENST00000273854	NM_004439.5	483	aac/aaAc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523708	148523708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520183		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	40	142	0	ENST00000320356.2:c.745G>A	p.Glu249Lys	p.E249K	ENST00000320356	NM_004456.4	249	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100999	41100999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1371429276		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	87	579	1	ENST00000373198.4:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000373198	NM_133170.3	453	Cgc/Tgc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955111	17955112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755706305		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	103	920	0	ENST00000458235.1:c.115dup	p.Gln39ProfsTer13	p.Q39Pfs*13	ENST00000458235	NM_000215.3	39	cag/cCag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs757302188		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	75	515	3	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	137	827	2	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs113954997		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	58	283	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
SYK	6850	MSKCC	GRCh37	9	93637062	93637062	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369986984		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	91	410	0	ENST00000375746.1:c.1112C>T	p.Thr371Met	p.T371M	ENST00000375746	NM_001174167.1	371	aCg/aTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189587160	189587160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	53	210	0	ENST00000264731.3:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000264731	NM_003722.4	393	Cga/Tga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112421	115112421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200038495		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	79	653	0	ENST00000257566.3:c.1319C>T	p.Ala440Val	p.A440V	ENST00000257566	NM_016569.3	440	gCc/gTc																																																																														
AR	367	MSKCC	GRCh37	X	66765979	66765979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	117	838	0	ENST00000374690.3:c.991G>A	p.Ala331Thr	p.A331T	ENST00000374690	NM_000044.3	331	Gct/Act																																																																														
ABL1	25	MSKCC	GRCh37	9	133760529	133760529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371656033		P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	116	872	1	ENST00000318560.5:c.2852C>T	p.Pro951Leu	p.P951L	ENST00000318560	NM_005157.4	951	cCg/cTg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670711	86670711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	21	68	0	ENST00000274376.6:c.1989G>T	p.Lys663Asn	p.K663N	ENST00000274376	NM_002890.2	663	aaG/aaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711975	89711975	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	59	187	0	ENST00000371953.3:c.593T>G	p.Met198Arg	p.M198R	ENST00000371953	NM_000314.4	198	aTg/aGg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819186	3819186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	56	439	0	ENST00000262367.5:c.3049C>A	p.Pro1017Thr	p.P1017T	ENST00000262367	NM_004380.2	1017	Ccc/Acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830109	72830109	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	110	496	0	ENST00000268489.5:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000268489	NM_006885.3	2158	Cga/Tga																																																																														
CARM1	10498	MSKCC	GRCh37	19	11015744	11015744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	70	396	1	ENST00000327064.4:c.338C>T	p.Thr113Ile	p.T113I	ENST00000327064	NM_199141.1	113	aCa/aTa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753288	42753288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	147	1001	1	ENST00000222329.4:c.976C>A	p.Leu326Ile	p.L326I	ENST00000222329	NM_006494.2	326	Ctc/Atc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385156	41385156	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	124	650	0	ENST00000373198.4:c.805A>G	p.Ile269Val	p.I269V	ENST00000373198	NM_133170.3	269	Atc/Gtc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437657	52437657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	107	732	0	ENST00000460680.1:c.1504G>A	p.Ala502Thr	p.A502T	ENST00000460680	NM_004656.3	502	Gct/Act																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931323	131931323	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	82	233	0	ENST00000265335.6:c.2028A>C	p.Glu676Asp	p.E676D	ENST00000265335		676	gaA/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0040229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	47	751	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0040229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	43	383	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	41	395	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295795	212295795	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369248674		P-0040248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	69	543	0	ENST00000342788.4:c.2518G>A	p.Val840Ile	p.V840I	ENST00000342788	NM_005235.2	840	Gtt/Att																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713818	30713818	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	56	667	0	ENST00000359013.4:c.1218G>C	p.Lys406Asn	p.K406N	ENST00000359013	NM_001024847.2	406	aaG/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	154	542	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0040256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	88	709	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	339	336	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0040257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	222	781	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0040262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	235	293	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075157	16075157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	275	344	0	ENST00000268712.3:c.395C>G	p.Pro132Arg	p.P132R	ENST00000268712	NM_006311.3	132	cCg/cGg																																																																														
MGA	23269	MSKCC	GRCh37	15	42052559	42052563	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GAGTG	GAGTG	A			P-0040262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	251	395	0	ENST00000219905.7:c.7230_7234delinsA	p.Trp2410Ter	p.W2410*	ENST00000219905	NM_001164273.1	2410	tgGAGTGac/tgAac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	128	398	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0040354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	66	185	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	26	142	1	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380279	25380279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	72	304	0	ENST00000256078.4:c.179G>A	p.Gly60Asp	p.G60D	ENST00000256078	NM_033360.2	60	gGt/gAt																																																																														
FAM175A	0	MSKCC	GRCh37	4	84391521	84391521	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542570943		P-0040354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	58	223	0	ENST00000321945.7:c.311G>A	p.Arg104His	p.R104H	ENST00000321945	NM_139076.2	104	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	59	473	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
STK40	83931	MSKCC	GRCh37	1	36814361	36814361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	157	868	1	ENST00000373129.3:c.679G>T	p.Gly227Trp	p.G227W	ENST00000373129	NM_032017.1	227	Ggg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782664		P-0040444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	483	657	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685282	86685282	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	201	229	0	ENST00000274376.6:c.2998G>T	p.Glu1000Ter	p.E1000*	ENST00000274376	NM_002890.2	1000	Gag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	184	820	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	128	326	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	166	281	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108115594	108115594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs730881336		P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	107	427	0	ENST00000278616.4:c.742C>T	p.Arg248Ter	p.R248*	ENST00000278616	NM_000051.3	248	Cga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508260	106508260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	79	376	0	ENST00000359195.3:c.254C>T	p.Ala85Val	p.A85V	ENST00000359195	NM_002649.2	85	gCg/gTg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982102	201982103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTCA			P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	227	880	0	ENST00000359651.3:c.627_630dup	p.Asp211LeufsTer7	p.D211Lfs*7	ENST00000359651		209	tcc/tcCTCAc																																																																														
ATM	472	MSKCC	GRCh37	11	108186613	108186613	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	106	342	0	ENST00000278616.4:c.6070G>C	p.Gly2024Arg	p.G2024R	ENST00000278616	NM_000051.3	2024	Ggg/Cgg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458552	12458552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	210	663	0	ENST00000287820.6:c.1169A>C	p.Asp390Ala	p.D390A	ENST00000287820	NM_015869.4	390	gAc/gCc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943672	71943672	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0040509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	122	545	0	ENST00000298229.2:c.1715G>C	p.Arg572Thr	p.R572T	ENST00000298229	NM_001567.3	572	aGg/aCg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964483	93964483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	45	493	0	ENST00000369303.4:c.2414C>A	p.Pro805His	p.P805H	ENST00000369303	NM_004440.3	805	cCc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577587	7577605	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTGGTACAGTCAGAGCC	TGGTGGTACAGTCAGAGCC	-			P-0040518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	181	550	1	ENST00000269305.4:c.676_694del	p.Gly226SerfsTer15	p.G226Sfs*15	ENST00000269305	NM_001126112.2	226	GGCTCTGACTGTACCACCAtc/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	263	571	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	32	185	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193181198	193181198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	32	204	1	ENST00000367435.3:c.1034C>T	p.Ser345Phe	p.S345F	ENST00000367435	NM_024529.4	345	tCt/tTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134884869	134884869	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1261079719		P-0040545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	159	358	3	ENST00000398015.3:c.1645G>A	p.Gly549Arg	p.G549R	ENST00000398015	NM_004441.4	549	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419867	41419867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	62	442	1	ENST00000373198.4:c.454G>A	p.Ala152Thr	p.A152T	ENST00000373198	NM_133170.3	152	Gcc/Acc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956704	93956704	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	22	217	0	ENST00000369303.4:c.2533-1G>A		p.X845_splice	ENST00000369303	NM_004440.3	845																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679799	88679799	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1467942640		P-0040545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	141	436	0	ENST00000360948.2:c.664C>T	p.Arg222Ter	p.R222*	ENST00000360948	NM_001012338.2	222	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499670	8499670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	31	330	0	ENST00000356435.5:c.2299G>A	p.Asp767Asn	p.D767N	ENST00000356435		767	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112173932	112173932	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	CTA			P-0040545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	64	291	0	ENST00000257430.4:c.2641delinsCTA	p.Ser881LeufsTer36	p.S881Lfs*36	ENST00000257430	NM_000038.5	881	Tcc/CTAcc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	134	476	0	ENST00000344626.4:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000344626	NM_003072.3	1192	cGc/cAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	101	434	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	136	261	3	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	78	531	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	51	184	0	ENST00000358273.4:c.1882del	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	59	339	2	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	126	541	0	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	120	381	1	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
TCF3	6929	MSKCC	GRCh37	19	1627369	1627369	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35936626		P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	143	513	0	ENST00000344749.5:c.355G>A	p.Gly119Ser	p.G119S	ENST00000344749	NM_001136139.2	119	Ggc/Agc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291473	10291473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61750053		P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	88	445	0	ENST00000340748.4:c.206G>A	p.Arg69His	p.R69H	ENST00000340748		69	cGt/cAt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467448	25467448	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1392385564		P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	65	521	1	ENST00000264709.3:c.1628del	p.Gly543AlafsTer108	p.G543Afs*108	ENST00000264709	NM_175629.2	543	gGc/gc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	81	666	1	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753099	42753099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	137	572	2	ENST00000222329.4:c.1165C>T	p.Arg389Trp	p.R389W	ENST00000222329	NM_006494.2	389	Cgg/Tgg																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271362	26271362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781608741		P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	60	365	0	ENST00000305910.3:c.251G>A	p.Arg84His	p.R84H	ENST00000305910	NM_003534.2	84	cGc/cAc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073425	8073426	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs775750077		P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	60	354	0	ENST00000377482.5:c.1233dup	p.Arg412Ter	p.R412*	ENST00000377482	NM_018948.3	411	-/T																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260290	16260290	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755142962		P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	55	428	0	ENST00000375759.3:c.7559del	p.Pro2520GlnfsTer15	p.P2520Qfs*15	ENST00000375759	NM_015001.2	2519	Ccc/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653866	89653866	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	46	259	0	ENST00000371953.3:c.164+1del		p.R55fs	ENST00000371953	NM_000314.4	55	aGg/ag																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724286	112724286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	118	376	0	ENST00000369452.4:c.170C>A	p.Ser57Tyr	p.S57Y	ENST00000369452	NM_007373.3	57	tCc/tAc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64574518	64574518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	139	568	2	ENST00000337652.1:c.892C>T	p.Pro298Ser	p.P298S	ENST00000337652	NM_130803.2	298	Cct/Tct																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118845	115118845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	82	316	1	ENST00000257566.3:c.496C>A	p.His166Asn	p.H166N	ENST00000257566	NM_016569.3	166	Cac/Aac																																																																														
NF1	4763	MSKCC	GRCh37	17	29676159	29676159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	68	216	0	ENST00000358273.4:c.7211C>A	p.Ala2404Asp	p.A2404D	ENST00000358273	NM_001042492.2	2404	gCt/gAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29684371	29684372	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	70	326	0	ENST00000358273.4:c.7955_7956del	p.Lys2652SerfsTer7	p.K2652Sfs*7	ENST00000358273	NM_001042492.2	2652	AAa/a																																																																														
CALR	811	MSKCC	GRCh37	19	13054405	13054405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1200295838		P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	138	475	0	ENST00000316448.5:c.1015G>A	p.Ala339Thr	p.A339T	ENST00000316448	NM_004343.3	339	Gct/Act																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714699	52714699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1359743267		P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	119	477	2	ENST00000322088.6:c.457G>A	p.Val153Ile	p.V153I	ENST00000322088	NM_014225.5	153	Gtc/Atc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99185051	99185051	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	87	316	0	ENST00000074304.5:c.2453T>C	p.Leu818Ser	p.L818S	ENST00000074304	NM_001134224.1	818	tTa/tCa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209104653	209104653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	97	349	0	ENST00000345146.2:c.925C>T	p.His309Tyr	p.H309Y	ENST00000345146	NM_005896.2	309	Cac/Tac																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920060	1920060	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770171601		P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	104	542	0	ENST00000382895.3:c.1120G>A	p.Ala374Thr	p.A374T	ENST00000382895	NM_133330.2	374	Gca/Aca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244130	153244151	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATCCGCCACACAACTCCCC	CTGATCCGCCACACAACTCCCC	-			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	98	357	0	ENST00000281708.4:c.2006_2027del	p.Gly669GlufsTer31	p.G669Efs*31	ENST00000281708	NM_033632.3	669	gGGGGAGTTGTGTGGCGGATCAGa/ga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629954	187629954	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	146	579	0	ENST00000441802.2:c.1028C>G	p.Thr343Ser	p.T343S	ENST00000441802	NM_005245.3	343	aCt/aGt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589532	67589558	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTAGGATCAAGTTGTCAAAGAAGATA	TCTAGGATCAAGTTGTCAAAGAAGATA	-			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	13	137	0	ENST00000274335.5:c.1300-5_1321del		p.X434_splice	ENST00000274335		434																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672599	30672599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	101	518	0	ENST00000376406.3:c.4361A>G	p.Glu1454Gly	p.E1454G	ENST00000376406	NM_014641.2	1454	gAg/gGg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133296	38133296	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	119	443	0	ENST00000317025.8:c.4177del	p.Ala1393ProfsTer30	p.A1393Pfs*30	ENST00000317025	NM_023034.1	1393	Gcc/cc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187221	38187222	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	78	559	2	ENST00000317025.8:c.1255dup	p.Thr419AsnfsTer28	p.T419Nfs*28	ENST00000317025	NM_023034.1	419	acc/aAcc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227672	53227672	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	89	417	0	ENST00000375401.3:c.2516G>T	p.Gly839Val	p.G839V	ENST00000375401	NM_004187.3	839	gGc/gTc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246332	53246332	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	133	508	0	ENST00000375401.3:c.650A>G	p.Gln217Arg	p.Q217R	ENST00000375401	NM_004187.3	217	cAg/cGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	435	381	0				ENST00000310581	NM_198253.2																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56482369	56482369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	47	781	0	ENST00000267101.3:c.917C>G	p.Pro306Arg	p.P306R	ENST00000267101	NM_001982.3	306	cCt/cGt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127665	64127665	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1291878532		P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	49	942	2	ENST00000334205.4:c.158C>T	p.Ala53Val	p.A53V	ENST00000334205	NM_003942.2	53	gCg/gTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7117150	7117150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146490822		P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	36	865	2	ENST00000302850.5:c.4066G>A	p.Glu1356Lys	p.E1356K	ENST00000302850	NM_000208.2	1356	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879855	37879855	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1604	360	854	0	ENST00000269571.5:c.2150A>T	p.Glu717Val	p.E717V	ENST00000269571		717	gAg/gTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868168	45868168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	54	1036	0	ENST00000391945.4:c.522C>G	p.Ile174Met	p.I174M	ENST00000391945	NM_000400.3	174	atC/atG																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618928	37618928	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1389471686		P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	73	706	1	ENST00000447079.4:c.604C>T	p.Arg202Ter	p.R202*	ENST00000447079	NM_015083.1	202	Cga/Tga																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643566	38643578	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAATGTTAGGG	GAAAATGTTAGGG	-			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	35	741	0	ENST00000299084.4:c.1044_1056del	p.Gly350MetfsTer52	p.G350Mfs*52	ENST00000299084	NM_152594.2	346	GAAAATGTTAGGGga/ga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864936	57864936	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1050431269		P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	49	953	0	ENST00000228682.2:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000228682	NM_005269.2	805	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711887	89711887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	29	509	1	ENST00000371953.3:c.505C>T	p.Pro169Ser	p.P169S	ENST00000371953	NM_000314.4	169	Ccc/Tcc																																																																														
SDHB	6390	MSKCC	GRCh37	1	17349186	17349186	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	70	675	0	ENST00000375499.3:c.682G>T	p.Glu228Ter	p.E228*	ENST00000375499	NM_003000.2	228	Gag/Tag																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117690362	117690362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	72	688	0	ENST00000369458.3:c.767C>T	p.Ser256Leu	p.S256L	ENST00000369458	NM_024626.3	256	tCa/tTa																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551990	150551990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	101	616	0	ENST00000369026.2:c.17G>C	p.Arg6Thr	p.R6T	ENST00000369026	NM_021960.4	6	aGa/aCa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118937	115118938	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	14	350	1	ENST00000257566.3:c.403_404delinsAT	p.Pro135Ile	p.P135I	ENST00000257566	NM_016569.3	135	CCa/ATa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910723	32910723	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397507282		P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	24	557	0	ENST00000380152.3:c.2231C>T	p.Ser744Leu	p.S744L	ENST00000380152		744	tCa/tTa																																																																														
RB1	5925	MSKCC	GRCh37	13	48923090	48923090	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	102	380	0	ENST00000267163.4:c.540-2A>G		p.X180_splice	ENST00000267163	NM_000321.2	180																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30107922	30107922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	53	601	0	ENST00000331968.5:c.885C>A	p.Phe295Leu	p.F295L	ENST00000331968	NM_002742.2	295	ttC/ttA																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108018	30108018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	54	735	0	ENST00000331968.5:c.789G>C	p.Leu263Phe	p.L263F	ENST00000331968	NM_002742.2	263	ttG/ttC																																																																														
CBFB	865	MSKCC	GRCh37	16	67100633	67100633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	43	653	0	ENST00000412916.2:c.331A>G	p.Lys111Glu	p.K111E	ENST00000412916		111	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	86	914	0	ENST00000269305.4:c.277C>G	p.Leu93Val	p.L93V	ENST00000269305	NM_001126112.2	93	Ctg/Gtg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867571	45867571	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	56	1064	0	ENST00000391945.4:c.737C>G	p.Ser246Cys	p.S246C	ENST00000391945	NM_000400.3	246	tCc/tGc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281189	46281189	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs142561017		P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	52	701	0	ENST00000371998.3:c.3986C>G	p.Ser1329Cys	p.S1329C	ENST00000371998		1329	tCt/tGt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1976629	1976629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	39	808	1	ENST00000382895.3:c.3412C>T	p.Arg1138Ter	p.R1138*	ENST00000382895	NM_133330.2	1138	Cga/Tga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048716	180048716	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	31	921	0	ENST00000261937.6:c.1846T>C	p.Phe616Leu	p.F616L	ENST00000261937	NM_182925.4	616	Ttc/Ctc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942774	68942774	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	93	646	0	ENST00000288368.4:c.586G>C	p.Ala196Pro	p.A196P	ENST00000288368	NM_024870.2	196	Gca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	411	800	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475140	40475140	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	79	698	0	ENST00000264657.5:c.1770T>G	p.Ser590Arg	p.S590R	ENST00000264657	NM_139276.2	590	agT/agG																																																																														
ATRX	546	MSKCC	GRCh37	X	76937323	76937323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	66	272	0	ENST00000373344.5:c.3425C>T	p.Ser1142Leu	p.S1142L	ENST00000373344	NM_000489.3	1142	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	90	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0040604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	196	463	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	184	693	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942835	68942835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	45	672	2	ENST00000288368.4:c.647G>T	p.Arg216Ile	p.R216I	ENST00000288368	NM_024870.2	216	aGa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	392	583	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	139	441	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	166	209	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0040669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	257	491	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488700	212488700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	57	347	1	ENST00000342788.4:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000342788	NM_005235.2	717	Gag/Aag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645255	67645255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	100	526	0	ENST00000264010.4:c.520G>A	p.Glu174Lys	p.E174K	ENST00000264010	NM_006565.3	174	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140534506	140534506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	34	368	0	ENST00000288602.6:c.407C>T	p.Ser136Leu	p.S136L	ENST00000288602	NM_004333.4	136	tCa/tTa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562247	21562247	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143741195		P-0040669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	127	651	0	ENST00000382592.4:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000382592	NM_014572.2	558	Cgc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	48939096	48939096	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1214283717		P-0040669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	135	181	0	ENST00000267163.4:c.928G>T	p.Gly310Ter	p.G310*	ENST00000267163	NM_000321.2	310	Gga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713301	43713301	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	73	704	0	ENST00000382044.4:c.4172G>C	p.Arg1391Thr	p.R1391T	ENST00000382044	NM_001141980.1	1391	aGa/aCa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713326	43713326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	85	735	0	ENST00000382044.4:c.4147G>T	p.Asp1383Tyr	p.D1383Y	ENST00000382044	NM_001141980.1	1383	Gat/Tat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078363	5078363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	46	322	0	ENST00000381652.3:c.2050G>A	p.Glu684Lys	p.E684K	ENST00000381652	NM_004972.3	684	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	13	132	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959088	2959088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	46	246	0	ENST00000396946.4:c.2428G>A	p.Asp810Asn	p.D810N	ENST00000396946	NM_032415.4	810	Gac/Aac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061140	38061187	+	inframe_deletion	In_Frame_Del	DEL	CCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCA	CCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCA	-			P-0040672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	139	158	1	ENST00000250448.2:c.802_849del	p.Cys268_Gly283del	p.C268_G283del	ENST00000250448	NM_004496.3	268	TGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGG/-																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145736846	145736846	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	227	732	0	ENST00000428558.2:c.3595G>C	p.Ala1199Pro	p.A1199P	ENST00000428558	NM_004260.3	1199	Gcc/Ccc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0040749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	26	675	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828602	72828603	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	44	816	0	ENST00000268489.5:c.7978dup	p.Tyr2660LeufsTer68	p.Y2660Lfs*68	ENST00000268489	NM_006885.3	2660	tat/tTat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413278	139413278	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0040749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	176	862	0	ENST00000277541.6:c.866-2A>T		p.X289_splice	ENST00000277541	NM_017617.3	289																																																																															
MLH1	4292	MSKCC	GRCh37	3	37089060	37089060	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs915595144		P-0040752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	79	445	0	ENST00000231790.2:c.1782G>C	p.Glu594Asp	p.E594D	ENST00000231790	NM_000249.3	594	gaG/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057520000		P-0040752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	321	1166	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444900	49444900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1301	120	863	0	ENST00000301067.7:c.2566G>C	p.Glu856Gln	p.E856Q	ENST00000301067	NM_003482.3	856	Gag/Cag																																																																														
POLE	5426	MSKCC	GRCh37	12	133238203	133238203	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	94	666	0	ENST00000320574.5:c.2774C>G	p.Ser925Ter	p.S925*	ENST00000320574	NM_006231.2	925	tCa/tGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884174	151884787	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTCTAGGACAAAGTAAAATGCAAGATGTTTCTAGACATCTAGGGAATCTTCATGTTGTGGGTCATCATAGACAAAAATTAGTTAAGCTACCTTTCTATTGCAGTTAAAAAAAAAAAAGGTATTGCACATGTGAAAATGTTGGTAAAACAGAAATAATATATTCATGGCTTACCAGGGAATTCTTCCTTTAAGTTGGGGAAATTAATATTGGTGTAGAGAACTGGGGCAACAGTTGCCATTTCACCCAGAGCCTCCTCTTTCTCCCACTTAAGCGTGCTTCTCTGGGCATTCGACATTGTGTCATTTTCTCCTTCCACAGTGGGAGCTGATGATGTCCAAGAGTTGTTAGGATCACTTGCCATTGGATTAAAGGCTGAATTTTTATCCCTGGGAAAAAATAAATATCTTTACTTTATGAACATAAAATAACTTCTTAATATATGTTCAAGTATAGCTTTCATTAAAACCTATTACAAAACAGTTAAAAGTAACATATTTATAGCAAAAGCCACAATAAACGCAACATACAATAATATCATACACAATCATTTAAGCAGACTAATTTATATATAAATCAAACAGAAATTAGTGCAATTTAAGTTTCCATAGAAAA	GGTCTAGGACAAAGTAAAATGCAAGATGTTTCTAGACATCTAGGGAATCTTCATGTTGTGGGTCATCATAGACAAAAATTAGTTAAGCTACCTTTCTATTGCAGTTAAAAAAAAAAAAGGTATTGCACATGTGAAAATGTTGGTAAAACAGAAATAATATATTCATGGCTTACCAGGGAATTCTTCCTTTAAGTTGGGGAAATTAATATTGGTGTAGAGAACTGGGGCAACAGTTGCCATTTCACCCAGAGCCTCCTCTTTCTCCCACTTAAGCGTGCTTCTCTGGGCATTCGACATTGTGTCATTTTCTCCTTCCACAGTGGGAGCTGATGATGTCCAAGAGTTGTTAGGATCACTTGCCATTGGATTAAAGGCTGAATTTTTATCCCTGGGAAAAAATAAATATCTTTACTTTATGAACATAAAATAACTTCTTAATATATGTTCAAGTATAGCTTTCATTAAAACCTATTACAAAACAGTTAAAAGTAACATATTTATAGCAAAAGCCACAATAAACGCAACATACAATAATATCATACACAATCATTTAAGCAGACTAATTTATATATAAATCAAACAGAAATTAGTGCAATTTAAGTTTCCATAGAAAA	-			P-0040752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	82	23	0	ENST00000262189.6:c.4793+13_5008+173del		p.X1598_splice	ENST00000262189	NM_170606.2	1598																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0040797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	692	732	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1157879635		P-0040797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	200	605	1	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477106	67477106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1348033858		P-0040797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	89	724	1	ENST00000327367.4:c.913G>A	p.Ala305Thr	p.A305T	ENST00000327367	NM_005902.3	305	Gca/Aca																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678382	88678382	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	160	970	0	ENST00000360948.2:c.1154del	p.Gly385AlafsTer29	p.G385Afs*29	ENST00000360948	NM_001012338.2	385	gGc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577166	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTACTCAGGAT	CTACTCAGGAT	-			P-0040797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	394	652	0	ENST00000269305.4:c.783-11_783-1del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0040801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	143	764	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438170	56438171	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0040801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	353	1119	0	ENST00000407977.2:c.822_823del	p.Ile274MetfsTer7	p.I274Mfs*7	ENST00000407977		274	atCTgt/atgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0040812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	258	585	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934573		P-0040812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	226	629	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156731	20156731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	180	426	0	ENST00000379607.5:c.26G>A	p.Gly9Asp	p.G9D	ENST00000379607	NM_001412.3	9	gGt/gAt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	99	132	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024505	16024505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	182	195	0	ENST00000268712.3:c.1713del	p.Arg572GlufsTer18	p.R572Efs*18	ENST00000268712	NM_006311.3	571	ggG/gg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	35	135	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	159	112	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs79184941		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	242	128	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	168	192	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	93	129	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	241	316	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	206	198	1	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	66	252	3	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716154	243716154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	189	240	0	ENST00000263826.5:c.1040A>G	p.Tyr347Cys	p.Y347C	ENST00000263826	NM_005465.4	347	tAc/tGc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	250	307	0	ENST00000227507.2:c.859C>G	p.Pro287Ala	p.P287A	ENST00000227507	NM_053056.2	287	Ccc/Gcc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	185	217	0	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	158	229	0	ENST00000331920.6:c.290del	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255142	16255143	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-	rs764595221		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	183	182	3	ENST00000375759.3:c.2417_2418del	p.Arg806ThrfsTer14	p.R806Tfs*14	ENST00000375759	NM_015001.2	803	GAg/g																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469772	157469772	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	200	260	0	ENST00000346085.5:c.2570del	p.Pro857GlnfsTer57	p.P857Qfs*57	ENST00000346085	NM_020732.3	856	Ccc/cc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670282	134670282	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748807854		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	130	172	0	ENST00000398015.3:c.193G>A	p.Glu65Lys	p.E65K	ENST00000398015	NM_004441.4	65	Gag/Aag																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	238	304	1	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
CASP8	841	MSKCC	GRCh37	2	202151254	202151254	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	120	134	0	ENST00000358485.4:c.1557del	p.Lys520AsnfsTer10	p.K520Nfs*10	ENST00000358485	NM_001080125.1	518	atG/at																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612890	228612890	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757564822		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	177	224	0	ENST00000366696.1:c.137C>T	p.Thr46Met	p.T46M	ENST00000366696	NM_003493.2	46	aCg/aTg																																																																														
RARA	5914	MSKCC	GRCh37	17	38512370	38512370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	135	241	0	ENST00000254066.5:c.1286del	p.Gly429ValfsTer214	p.G429Vfs*214	ENST00000254066	NM_000964.3	427	ccG/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	197	258	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RET	5979	MSKCC	GRCh37	10	43615539	43615539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1451004715		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	139	198	1	ENST00000355710.3:c.2618G>A	p.Arg873Gln	p.R873Q	ENST00000355710	NM_020975.4	873	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210440	36210440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	200	230	1	ENST00000222270.7:c.433C>T	p.Arg145Ter	p.R145*	ENST00000222270	NM_014727.1	145	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589588	67589590	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	80	79	0	ENST00000274335.5:c.1351_1353del	p.Glu451del	p.E451del	ENST00000274335		451	GAA/-																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	256	306	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1399	261	315	3	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097039	11097039	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	309	341	0	ENST00000344626.4:c.530T>C	p.Leu177Pro	p.L177P	ENST00000344626	NM_003072.3	177	cTg/cCg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106366	27106366	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	410	218	0	ENST00000324856.7:c.5979del	p.Phe1993LeufsTer22	p.F1993Lfs*22	ENST00000324856	NM_006015.4	1993	Ttt/tt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993737	72993737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	143	221	0	ENST00000268489.5:c.308G>C	p.Arg103Pro	p.R103P	ENST00000268489	NM_006885.3	103	cGc/cCc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214714	36214714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	194	240	0	ENST00000222270.7:c.3145del	p.Ala1049ArgfsTer133	p.A1049Rfs*133	ENST00000222270	NM_014727.1	1047	cGg/cg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141561430	141561430	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	310	200	0	ENST00000220592.5:c.1375del	p.Gln459SerfsTer9	p.Q459Sfs*9	ENST00000220592	NM_012154.3	459	Cag/ag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484207	8484207	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773612496		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	183	162	0	ENST00000356435.5:c.3325C>T	p.Arg1109Cys	p.R1109C	ENST00000356435		1109	Cgt/Tgt																																																																														
ERF	2077	MSKCC	GRCh37	19	42754705	42754705	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1381524812		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	102	88	0	ENST00000222329.4:c.35C>T	p.Pro12Leu	p.P12L	ENST00000222329	NM_006494.2	12	cCg/cTg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44514615	44514615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	190	191	0	ENST00000291552.4:c.541C>A	p.Leu181Met	p.L181M	ENST00000291552	NM_006758.2	181	Ctg/Atg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9776633	9776633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	218	290	0	ENST00000377346.4:c.736A>G	p.Arg246Gly	p.R246G	ENST00000377346	NM_005026.3	246	Agg/Ggg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187715	11187715	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	209	222	0	ENST00000361445.4:c.6182del	p.Gly2061AlafsTer5	p.G2061Afs*5	ENST00000361445	NM_004958.3	2061	gGc/gc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188516	11188516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	164	172	1	ENST00000361445.4:c.5905C>A	p.Pro1969Thr	p.P1969T	ENST00000361445	NM_004958.3	1969	Ccc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107222	27107222	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs962329524		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	159	151	0	ENST00000324856.7:c.6833T>C	p.Val2278Ala	p.V2278A	ENST00000324856	NM_006015.4	2278	gTa/gCa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933426	36933426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	252	264	0	ENST00000361632.4:c.1861C>A	p.Pro621Thr	p.P621T	ENST00000361632		621	Cca/Aca																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310440	65310440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	121	163	0	ENST00000342505.4:c.2248C>T	p.Gln750Ter	p.Q750*	ENST00000342505	NM_002227.2	750	Caa/Taa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125496722	125496722	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1350704599		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	108	149	0	ENST00000428830.2:c.59A>G	p.Tyr20Cys	p.Y20C	ENST00000428830	NM_001114121.2	20	tAt/tGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420675	49420675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	211	237	0	ENST00000301067.7:c.15074T>C	p.Val5025Ala	p.V5025A	ENST00000301067	NM_003482.3	5025	gTa/gCa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864295	57864295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	58	271	0	ENST00000228682.2:c.1772C>T	p.Ala591Val	p.A591V	ENST00000228682	NM_005269.2	591	gCa/gTa																																																																														
POLE	5426	MSKCC	GRCh37	12	133237607	133237607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	210	205	0	ENST00000320574.5:c.3008A>G	p.Tyr1003Cys	p.Y1003C	ENST00000320574	NM_006231.2	1003	tAt/tGt																																																																														
POLE	5426	MSKCC	GRCh37	12	133257854	133257854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	133	186	0	ENST00000320574.5:c.74C>T	p.Ala25Val	p.A25V	ENST00000320574	NM_006231.2	25	gCc/gTc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562888	21562888	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	252	304	0	ENST00000382592.4:c.1031del	p.Pro344ArgfsTer89	p.P344Rfs*89	ENST00000382592	NM_014572.2	344	cCg/cg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518158	103518158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	105	128	0	ENST00000355739.4:c.2096G>A	p.Ser699Asn	p.S699N	ENST00000355739	NM_000123.3	699	aGc/aAc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610569	81610569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	110	160	0	ENST00000298171.2:c.2167A>G	p.Lys723Glu	p.K723E	ENST00000298171	NM_000369.2	723	Aag/Gag																																																																														
MGA	23269	MSKCC	GRCh37	15	42021470	42021472	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-	rs758651564		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	184	194	0	ENST00000219905.7:c.3775_3777del	p.Ser1259del	p.S1259del	ENST00000219905	NM_001164273.1	1256	TCC/-																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43699652	43699652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	154	233	0	ENST00000382044.4:c.5863T>C	p.Cys1955Arg	p.C1955R	ENST00000382044	NM_001141980.1	1955	Tgc/Cgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351215	89351215	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs143817649		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	245	272	0	ENST00000301030.4:c.1735T>C	p.Tyr579His	p.Y579H	ENST00000301030	NM_001256183.1	579	Tac/Cac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89862413	89862413	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs760513588		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	182	268	0	ENST00000389301.3:c.907A>G	p.Ser303Gly	p.S303G	ENST00000389301	NM_000135.2	303	Agt/Ggt																																																																														
NF1	4763	MSKCC	GRCh37	17	29679288	29679288	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	105	149	0	ENST00000358273.4:c.7471A>G	p.Thr2491Ala	p.T2491A	ENST00000358273	NM_001042492.2	2491	Act/Gct																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627389	37627389	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	200	253	0	ENST00000447079.4:c.1304T>G	p.Val435Gly	p.V435G	ENST00000447079	NM_015083.1	435	gTa/gGa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872109	37872109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	293	349	0	ENST00000269571.5:c.1430T>C	p.Val477Ala	p.V477A	ENST00000269571		477	gTg/gCg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5258088	5258088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	87	221	0	ENST00000357368.4:c.646T>C	p.Cys216Arg	p.C216R	ENST00000357368	NM_002850.3	216	Tgt/Cgt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248653	10248653	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	174	205	0	ENST00000340748.4:c.4100T>C	p.Val1367Ala	p.V1367A	ENST00000340748		1367	gTg/gCg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376247	15376248	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs780128218		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	105	238	0	ENST00000263377.2:c.766dup	p.Gln256ProfsTer46	p.Q256Pfs*46	ENST00000263377	NM_058243.2	256	cag/cCag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266852	18266852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	232	207	0	ENST00000222254.8:c.163G>T	p.Gly55Cys	p.G55C	ENST00000222254	NM_005027.3	55	Ggc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212131	36212131	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	99	175	2	ENST00000222270.7:c.1886del	p.Pro629ArgfsTer31	p.P629Rfs*31	ENST00000222270	NM_014727.1	628	Ccc/cc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905121	50905121	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	214	388	0	ENST00000440232.2:c.403T>C	p.Phe135Leu	p.F135L	ENST00000440232	NM_002691.3	135	Ttc/Ctc																																																																														
ALK	238	MSKCC	GRCh37	2	29541220	29541220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	133	162	0	ENST00000389048.3:c.1597A>G	p.Thr533Ala	p.T533A	ENST00000389048	NM_004304.4	533	Aca/Gca																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422401	225422401	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	42	150	0	ENST00000264414.4:c.239T>C	p.Val80Ala	p.V80A	ENST00000264414	NM_003590.4	80	gTt/gCt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661228	227661228	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	251	292	0	ENST00000305123.5:c.2227A>G	p.Thr743Ala	p.T743A	ENST00000305123	NM_005544.2	743	Acc/Gcc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662586	227662586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	133	227	0	ENST00000305123.5:c.869A>G	p.Asn290Ser	p.N290S	ENST00000305123	NM_005544.2	290	aAc/aGc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24135832	24135832	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	189	184	0	ENST00000263121.7:c.319T>A	p.Tyr107Asn	p.Y107N	ENST00000263121	NM_003073.3	107	Tac/Aac																																																																														
RAC2	5880	MSKCC	GRCh37	22	37627366	37627366	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	211	356	0	ENST00000249071.6:c.353A>G	p.Asp118Gly	p.D118G	ENST00000249071	NM_002872.4	118	gAc/gGc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12647768	12647768	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	45	162	0	ENST00000251849.4:c.612T>A	p.Ser204Arg	p.S204R	ENST00000251849	NM_002880.3	204	agT/agA																																																																														
MLH1	4292	MSKCC	GRCh37	3	37059025	37059025	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	129	151	0	ENST00000231790.2:c.822del	p.Ala275ProfsTer2	p.A275Pfs*2	ENST00000231790	NM_000249.3	273	agA/ag																																																																														
RHOA	387	MSKCC	GRCh37	3	49405963	49405963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	212	226	0	ENST00000418115.1:c.175G>A	p.Asp59Asn	p.D59N	ENST00000418115	NM_001664.2	59	Gac/Aac																																																																														
ATR	545	MSKCC	GRCh37	3	142242836	142242836	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	135	154	0	ENST00000350721.4:c.4151T>C	p.Val1384Ala	p.V1384A	ENST00000350721	NM_001184.3	1384	gTg/gCg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589588	67589592	+	protein_altering_variant	In_Frame_Del	DEL	GAATA	GAATA	TT			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	81	84	0	ENST00000274335.5:c.1351_1355delinsTT	p.Glu451_Tyr452delinsPhe	p.E451_Y452delinsF	ENST00000274335		451	GAATAt/TTt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180049811	180049811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	237	335	1	ENST00000261937.6:c.1577C>T	p.Ala526Val	p.A526V	ENST00000261937	NM_182925.4	526	gCc/gTc																																																																														
SESN1	27244	MSKCC	GRCh37	6	109321766	109321766	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	256	219	0	ENST00000436639.2:c.657del	p.Lys219AsnfsTer5	p.K219Nfs*5	ENST00000436639	NM_014454.2	219	aaA/aa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109415267	109415267	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	235	266	0	ENST00000436639.2:c.10G>T	p.Gly4Ter	p.G4*	ENST00000436639	NM_014454.2	4	Gga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959031	2959031	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1306775800		P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	163	233	0	ENST00000396946.4:c.2485A>G	p.Met829Val	p.M829V	ENST00000396946	NM_032415.4	829	Atg/Gtg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441968	6441968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	234	274	0	ENST00000356142.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000356142	NM_018890.3	176	tGc/tAc																																																																														
LYN	4067	MSKCC	GRCh37	8	56860228	56860228	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	176	202	0	ENST00000519728.1:c.230T>G	p.Ile77Ser	p.I77S	ENST00000519728	NM_002350.3	77	aTc/aGc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141569599	141569599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	147	160	0	ENST00000220592.5:c.685C>T	p.Pro229Ser	p.P229S	ENST00000220592	NM_012154.3	229	Cca/Tca																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250409	110250409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	244	265	0	ENST00000374672.4:c.266C>T	p.Ala89Val	p.A89V	ENST00000374672	NM_004235.4	89	gCg/gTg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915865	127915865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	156	187	1	ENST00000373547.4:c.616G>A	p.Ala206Thr	p.A206T	ENST00000373547	NM_002721.4	206	Gct/Act																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300071	137300071	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	205	335	0	ENST00000481739.1:c.356T>C	p.Val119Ala	p.V119A	ENST00000481739	NM_002957.4	119	gTc/gCc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137320966	137320966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	234	307	0	ENST00000481739.1:c.923T>C	p.Leu308Pro	p.L308P	ENST00000481739	NM_002957.4	308	cTg/cCg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589592	67589592	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	81	82	0	ENST00000274335.5:c.1355A>T	p.Tyr452Phe	p.Y452F	ENST00000274335		452	tAt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	132	266	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0040827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	455	789	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073308	8073308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780544753		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	41	418	0	ENST00000377482.5:c.1351G>A	p.Val451Met	p.V451M	ENST00000377482	NM_018948.3	451	Gtg/Atg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9778926	9778926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765972601		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	75	748	1	ENST00000377346.4:c.1195G>A	p.Glu399Lys	p.E399K	ENST00000377346	NM_005026.3	399	Gag/Aag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11169361	11169361	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519777		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	36	533	0	ENST00000361445.4:c.7514G>A	p.Arg2505Gln	p.R2505Q	ENST00000361445	NM_004958.3	2505	cGa/cAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11186751	11186751	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752458445		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	63	628	0	ENST00000361445.4:c.6454C>T	p.Arg2152Cys	p.R2152C	ENST00000361445	NM_004958.3	2152	Cgc/Tgc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11308061	11308061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200901835		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	80	911	0	ENST00000361445.4:c.931C>T	p.Arg311Cys	p.R311C	ENST00000361445	NM_004958.3	311	Cgt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16245981	16245981	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758108044		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	45	404	1	ENST00000375759.3:c.1604G>A	p.Arg535Gln	p.R535Q	ENST00000375759	NM_015001.2	535	cGa/cAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262660	16262660	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748733011		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	68	483	0	ENST00000375759.3:c.9925G>A	p.Gly3309Ser	p.G3309S	ENST00000375759	NM_015001.2	3309	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	85	860	0	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101511	27101511	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748573855		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	97	996	0	ENST00000324856.7:c.4793G>A	p.Arg1598His	p.R1598H	ENST00000324856	NM_006015.4	1598	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	48	540	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105607	27105607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	45	624	0	ENST00000324856.7:c.5218G>T	p.Gly1740Ter	p.G1740*	ENST00000324856	NM_006015.4	1740	Gga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106328	27106328	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748000514		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	60	789	1	ENST00000324856.7:c.5939G>A	p.Arg1980His	p.R1980H	ENST00000324856	NM_006015.4	1980	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	49	723	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107144	27107144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	84	631	0	ENST00000324856.7:c.6755C>T	p.Thr2252Ile	p.T2252I	ENST00000324856	NM_006015.4	2252	aCt/aTt																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46512247	46512247	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765089522		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	52	519	0	ENST00000262741.5:c.992G>A	p.Gly331Glu	p.G331E	ENST00000262741	NM_003629.3	331	gGa/gAa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46740333	46740333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	47	684	0	ENST00000371975.4:c.1813G>A	p.Ala605Thr	p.A605T	ENST00000371975	NM_003579.3	605	Gcc/Acc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65312344	65312344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	52	613	0	ENST00000342505.4:c.1975C>T	p.Arg659Cys	p.R659C	ENST00000342505	NM_002227.2	659	Cgc/Tgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65321246	65321246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773295685		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	64	628	3	ENST00000342505.4:c.1594C>T	p.Arg532Cys	p.R532C	ENST00000342505	NM_002227.2	532	Cgc/Tgc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1408536007		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	14	529	0	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429957	78429957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	53	433	1	ENST00000370768.2:c.922C>T	p.Arg308Cys	p.R308C	ENST00000370768	NM_003902.3	308	Cgc/Tgc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115251226	115251226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	50	524	0	ENST00000369535.4:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000369535	NM_002524.4	167	cGa/cAa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115267948	115267948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	33	431	0	ENST00000438362.2:c.1785C>A	p.Phe595Leu	p.F595L	ENST00000438362	NM_001242891.1	595	ttC/ttA																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115280138	115280138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	38	487	0	ENST00000438362.2:c.494C>T	p.Ala165Val	p.A165V	ENST00000438362	NM_001242891.1	165	gCc/gTc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165692	118165692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771057074		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	46	470	0	ENST00000369448.3:c.202G>A	p.Asp68Asn	p.D68N	ENST00000369448	NM_017709.3	68	Gac/Aac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462942	120462942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	73	566	1	ENST00000256646.2:c.5389G>A	p.Ala1797Thr	p.A1797T	ENST00000256646	NM_024408.3	1797	Gca/Aca																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120479946	120479946	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782313621		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	75	707	0	ENST00000256646.2:c.3481G>A	p.Gly1161Arg	p.G1161R	ENST00000256646	NM_024408.3	1161	Ggg/Agg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120480064	120480064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	72	547	0	ENST00000256646.2:c.3363G>T	p.Gln1121His	p.Q1121H	ENST00000256646	NM_024408.3	1121	caG/caT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120484331	120484331	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	41	445	0	ENST00000256646.2:c.2799C>A	p.Phe933Leu	p.F933L	ENST00000256646	NM_024408.3	933	ttC/ttA																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120502048	120502048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	35	454	0	ENST00000256646.2:c.1993C>T	p.Arg665Cys	p.R665C	ENST00000256646	NM_024408.3	665	Cgc/Tgc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874263	155874263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	134	666	0	ENST00000368323.3:c.268A>G	p.Met90Val	p.M90V	ENST00000368323	NM_006912.5	90	Atg/Gtg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838017	156838017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	77	996	1	ENST00000524377.1:c.550G>A	p.Ala184Thr	p.A184T	ENST00000524377	NM_002529.3	184	Gcc/Acc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843688	156843688	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754611476		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	83	1113	1	ENST00000524377.1:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000524377	NM_002529.3	372	Gcc/Acc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156848984	156848984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1381516878		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	73	911	0	ENST00000524377.1:c.1876C>T	p.Gln626Ter	p.Q626*	ENST00000524377	NM_002529.3	626	Cag/Tag																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724611	162724611	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149507401		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	53	531	0	ENST00000367921.3:c.383G>A	p.Arg128His	p.R128H	ENST00000367921	NM_006182.2	128	cGc/cAc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176132997	176132997	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs746336083		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	35	419	0	ENST00000367669.3:c.596G>T	p.Arg199Ile	p.R199I	ENST00000367669	NM_022457.5	199	aGa/aTa																																																																														
IL10	3586	MSKCC	GRCh37	1	206943235	206943235	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760677075		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	52	369	0	ENST00000423557.1:c.383G>A	p.Arg128Gln	p.R128Q	ENST00000423557	NM_000572.2	128	cGa/cAa																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612638	228612638	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146830002		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	75	758	1	ENST00000366696.1:c.389G>A	p.Arg130His	p.R130H	ENST00000366696	NM_003493.2	130	cGt/cAt																																																																														
FH	2271	MSKCC	GRCh37	1	241667401	241667401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749316923		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	51	596	0	ENST00000366560.3:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000366560	NM_000143.3	350	cGg/cAg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243668610	243668610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	36	419	0	ENST00000263826.5:c.1381G>A	p.Asp461Asn	p.D461N	ENST00000263826	NM_005465.4	461	Gac/Aac																																																																														
AKT3	10000	MSKCC	GRCh37	1	243708889	243708889	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	35	428	0	ENST00000263826.5:c.1174G>T	p.Gly392Ter	p.G392*	ENST00000263826	NM_005465.4	392	Gga/Tga																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097643	8097643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	34	247	0	ENST00000346208.3:c.25C>T	p.Arg9Cys	p.R9C	ENST00000346208		9	Cgc/Tgc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106042	8106042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	64	614	0	ENST00000346208.3:c.862G>A	p.Gly288Arg	p.G288R	ENST00000346208		288	Ggg/Agg																																																																														
RET	5979	MSKCC	GRCh37	10	43606811	43606811	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775842917		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	73	1052	2	ENST00000355710.3:c.1420C>T	p.Arg474Trp	p.R474W	ENST00000355710	NM_020975.4	474	Cgg/Tgg																																																																														
RET	5979	MSKCC	GRCh37	10	43615084	43615084	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782636		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	86	870	0	ENST00000355710.3:c.2498G>A	p.Arg833His	p.R833H	ENST00000355710	NM_020975.4	833	cGc/cAc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851586	63851586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	65	695	0	ENST00000279873.7:c.2364C>A	p.Phe788Leu	p.F788L	ENST00000279873	NM_032199.2	788	ttC/ttA																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851828	63851828	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201944744		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	76	722	0	ENST00000279873.7:c.2606C>A	p.Ser869Tyr	p.S869Y	ENST00000279873	NM_032199.2	869	tCt/tAt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852262	63852262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1178738385		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	67	690	1	ENST00000279873.7:c.3040C>T	p.Arg1014Cys	p.R1014C	ENST00000279873	NM_032199.2	1014	Cgc/Tgc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332272	70332273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1446158817		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	49	488	1	ENST00000373644.4:c.184dup	p.Thr62AsnfsTer4	p.T62Nfs*4	ENST00000373644	NM_030625.2	59	-/A																																																																														
TET1	80312	MSKCC	GRCh37	10	70332565	70332565	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185830524		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	44	694	0	ENST00000373644.4:c.470C>T	p.Ser157Leu	p.S157L	ENST00000373644	NM_030625.2	157	tCg/tTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70406214	70406214	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	73	782	0	ENST00000373644.4:c.3728A>C	p.Lys1243Thr	p.K1243T	ENST00000373644	NM_030625.2	1243	aAa/aCa																																																																														
TET1	80312	MSKCC	GRCh37	10	70412277	70412277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	33	302	0	ENST00000373644.4:c.4387G>A	p.Ala1463Thr	p.A1463T	ENST00000373644	NM_030625.2	1463	Gca/Aca																																																																														
TET1	80312	MSKCC	GRCh37	10	70432653	70432653	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	27	409	0	ENST00000373644.4:c.4675C>T	p.Arg1559Cys	p.R1559C	ENST00000373644	NM_030625.2	1559	Cgt/Tgt																																																																														
TET1	80312	MSKCC	GRCh37	10	70450691	70450691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368896189		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	71	590	0	ENST00000373644.4:c.5531C>T	p.Ala1844Val	p.A1844V	ENST00000373644	NM_030625.2	1844	gCa/gTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624270	89624270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs398123324		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	58	410	0	ENST00000371953.3:c.44G>A	p.Arg15Lys	p.R15K	ENST00000371953	NM_000314.4	15	aGa/aAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	95	551	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	72	494	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156699	2156699	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs975030738		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	89	916	0	ENST00000434045.2:c.223G>A	p.Ala75Thr	p.A75T	ENST00000434045	NM_001127598.1	75	Gcc/Acc																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251941	8251941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	92	903	3	ENST00000335790.3:c.136G>A	p.Glu46Lys	p.E46K	ENST00000335790	NM_002315.2	46	Gaa/Aaa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132927	64132927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145356210		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	71	709	0	ENST00000334205.4:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000334205	NM_003942.2	354	cGa/cAa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137241	64137241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	51	719	0	ENST00000334205.4:c.1673G>A	p.Arg558Gln	p.R558Q	ENST00000334205	NM_003942.2	558	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941049	71941049	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373511105		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	67	1025	1	ENST00000298229.2:c.925G>A	p.Val309Met	p.V309M	ENST00000298229	NM_001567.3	309	Gtg/Atg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948365	71948365	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	154	1122	0	ENST00000298229.2:c.3077T>G	p.Leu1026Arg	p.L1026R	ENST00000298229	NM_001567.3	1026	cTt/cGt																																																																														
PGR	5241	MSKCC	GRCh37	11	100999798	100999798	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	29	745	0	ENST00000325455.5:c.4A>C	p.Thr2Pro	p.T2P	ENST00000325455	NM_001202474.3	2	Act/Cct																																																																														
ATM	472	MSKCC	GRCh37	11	108165730	108165730	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765759912		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	22	403	0	ENST00000278616.4:c.4853G>A	p.Arg1618Gln	p.R1618Q	ENST00000278616	NM_000051.3	1618	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108188249	108188249	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1057517120		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	22	243	0	ENST00000278616.4:c.6347+1G>A		p.X2116_splice	ENST00000278616	NM_000051.3	2116																																																																															
SDHD	6392	MSKCC	GRCh37	11	111958593	111958593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	38	596	0	ENST00000375549.3:c.65G>A	p.Arg22Gln	p.R22Q	ENST00000375549	NM_003002.3	22	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342548	118342548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	19	311	0	ENST00000534358.1:c.674C>A	p.Pro225His	p.P225H	ENST00000534358	NM_005933.3	225	cCt/cAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343875	118343875	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	65	541	0	ENST00000534358.1:c.2001T>G	p.Phe667Leu	p.F667L	ENST00000534358	NM_005933.3	667	ttT/ttG																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362582	118362582	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	37	506	0	ENST00000534358.1:c.4943A>C	p.Lys1648Thr	p.K1648T	ENST00000534358	NM_005933.3	1648	aAg/aCg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	459809	459809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	82	763	0	ENST00000399788.2:c.1286G>T	p.Arg429Ile	p.R429I	ENST00000399788	NM_001042603.1	429	aGa/aTa																																																																														
CCND2	894	MSKCC	GRCh37	12	4385250	4385250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	77	602	0	ENST00000261254.3:c.275C>T	p.Pro92Leu	p.P92L	ENST00000261254	NM_001759.3	92	cCg/cTg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022522	12022522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762232508		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	94	785	0	ENST00000396373.4:c.628C>T	p.Arg210Cys	p.R210C	ENST00000396373	NM_001987.4	210	Cgc/Tgc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022819	12022819	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1465114480		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	57	664	1	ENST00000396373.4:c.925C>T	p.Arg309Trp	p.R309W	ENST00000396373	NM_001987.4	309	Cgg/Tgg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435082	18435082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	68	448	0	ENST00000266497.5:c.67G>T	p.Glu23Ter	p.E23*	ENST00000266497		23	Gaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435293	18435293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	65	434	0	ENST00000266497.5:c.278G>A	p.Ser93Asn	p.S93N	ENST00000266497		93	aGc/aAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656263	18656263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762092026		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	52	569	0	ENST00000266497.5:c.2942G>A	p.Arg981His	p.R981H	ENST00000266497		981	cGc/cAc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46215235	46215235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	20	299	0	ENST00000334344.6:c.670G>A	p.Glu224Lys	p.E224K	ENST00000334344	NM_152641.2	224	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244530	46244530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	55	607	1	ENST00000334344.6:c.2624G>A	p.Gly875Glu	p.G875E	ENST00000334344	NM_152641.2	875	gGa/gAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416443	49416443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	86	724	0	ENST00000301067.7:c.16268T>C	p.Val5423Ala	p.V5423A	ENST00000301067	NM_003482.3	5423	gTt/gCt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432375	49432375	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751964761		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	87	894	2	ENST00000301067.7:c.8764C>T	p.Arg2922Trp	p.R2922W	ENST00000301067	NM_003482.3	2922	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433649	49433649	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200359477		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	124	1145	2	ENST00000301067.7:c.7904G>A	p.Arg2635Gln	p.R2635Q	ENST00000301067	NM_003482.3	2635	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434774	49434774	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746355138		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	95	977	0	ENST00000301067.7:c.6779G>A	p.Ser2260Asn	p.S2260N	ENST00000301067	NM_003482.3	2260	aGc/aAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434965	49434965	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	53	733	0	ENST00000301067.7:c.6588T>G	p.Tyr2196Ter	p.Y2196*	ENST00000301067	NM_003482.3	2196	taT/taG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436643	49436643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	78	821	0	ENST00000301067.7:c.5663C>T	p.Ser1888Phe	p.S1888F	ENST00000301067	NM_003482.3	1888	tCc/tTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487212	56487212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144549266		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	55	662	1	ENST00000267101.3:c.1358G>A	p.Arg453His	p.R453H	ENST00000267101	NM_001982.3	453	cGt/cAt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864148	57864148	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766159479		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	93	652	0	ENST00000228682.2:c.1625G>A	p.Arg542His	p.R542H	ENST00000228682	NM_005269.2	542	cGc/cAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864355	57864355	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765569651		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	76	889	0	ENST00000228682.2:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000228682	NM_005269.2	611	cGg/cAg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69214108	69214108	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	34	326	0	ENST00000462284.1:c.312A>C	p.Lys104Asn	p.K104N	ENST00000462284	NM_002392.5	104	aaA/aaC																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233525	69233525	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	29	475	0	ENST00000462284.1:c.1390C>A	p.Leu464Ile	p.L464I	ENST00000462284	NM_002392.5	464	Ctt/Att																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813361	102813361	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1280732914		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	53	622	0	ENST00000307046.8:c.328G>A	p.Ala110Thr	p.A110T	ENST00000307046	NM_001111285.1	110	Gca/Aca																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856364	111856364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	14	60	0	ENST00000341259.2:c.415C>T	p.Arg139Cys	p.R139C	ENST00000341259	NM_005475.2	139	Cgc/Tgc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112892395	112892395	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	47	536	0	ENST00000351677.2:c.553G>T	p.Glu185Ter	p.E185*	ENST00000351677	NM_002834.3	185	Gaa/Taa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112602	115112602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs865915137		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	105	996	1	ENST00000257566.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000257566	NM_016569.3	380	Gag/Aag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115397	115115397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866796237		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	62	682	0	ENST00000257566.3:c.929G>A	p.Arg310Gln	p.R310Q	ENST00000257566	NM_016569.3	310	cGa/cAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117422	115117422	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151047347		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	32	434	0	ENST00000257566.3:c.752G>A	p.Arg251Gln	p.R251Q	ENST00000257566	NM_016569.3	251	cGg/cAg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434070	121434070	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766770471		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	67	656	1	ENST00000257555.6:c.961C>T	p.Arg321Cys	p.R321C	ENST00000257555		321	Cgc/Tgc																																																																														
SETD8	0	MSKCC	GRCh37	12	123875312	123875312	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	54	514	0	ENST00000330479.4:c.268G>T	p.Gly90Ter	p.G90*	ENST00000330479	NM_020382.3	90	Gga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133212495	133212495	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs879254168		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	51	517	0	ENST00000320574.5:c.5794C>T	p.Arg1932Cys	p.R1932C	ENST00000320574	NM_006231.2	1932	Cgt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133225525	133225525	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762090058		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	57	680	0	ENST00000320574.5:c.4139C>T	p.Ser1380Leu	p.S1380L	ENST00000320574	NM_006231.2	1380	tCg/tTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133236035	133236035	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762140272		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	55	638	0	ENST00000320574.5:c.3121C>T	p.Arg1041Trp	p.R1041W	ENST00000320574	NM_006231.2	1041	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133240670	133240670	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1208731306		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	62	690	0	ENST00000320574.5:c.2626T>G	p.Phe876Val	p.F876V	ENST00000320574	NM_006231.2	876	Ttt/Gtt																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	94	587	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549394	21549394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148935054		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	44	663	1	ENST00000382592.4:c.2882G>A	p.Arg961Gln	p.R961Q	ENST00000382592	NM_014572.2	961	cGg/cAg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563413	21563413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150428840		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	126	1034	2	ENST00000382592.4:c.506G>A	p.Arg169Gln	p.R169Q	ENST00000382592	NM_014572.2	169	cGg/cAg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975407	26975407	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs981705610		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	43	494	0	ENST00000381527.3:c.1033G>A	p.Val345Ile	p.V345I	ENST00000381527	NM_001260.1	345	Gtt/Att																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578253	28578253	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144397269		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	82	628	0	ENST00000241453.7:c.2918G>A	p.Arg973Gln	p.R973Q	ENST00000241453	NM_004119.2	973	cGa/cAa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28597546	28597546	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1474119276		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	53	617	0	ENST00000241453.7:c.2359G>T	p.Asp787Tyr	p.D787Y	ENST00000241453	NM_004119.2	787	Gat/Tat																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622521	28622521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	37	488	0	ENST00000241453.7:c.1096G>T	p.Glu366Ter	p.E366*	ENST00000241453	NM_004119.2	366	Gag/Tag																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623592	28623592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	54	561	0	ENST00000241453.7:c.965G>T	p.Arg322Ile	p.R322I	ENST00000241453	NM_004119.2	322	aGa/aTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907459	32907459	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	27	328	0	ENST00000380152.3:c.1844A>C	p.Asn615Thr	p.N615T	ENST00000380152		615	aAc/aCc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911247	32911247	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs431825298		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	54	638	0	ENST00000380152.3:c.2755G>A	p.Glu919Lys	p.E919K	ENST00000380152		919	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911328	32911328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	41	603	0	ENST00000380152.3:c.2836G>T	p.Asp946Tyr	p.D946Y	ENST00000380152		946	Gat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914091	32914091	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	40	555	0	ENST00000380152.3:c.5599A>G	p.Thr1867Ala	p.T1867A	ENST00000380152		1867	Aca/Gca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914893	32914893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	39	443	0	ENST00000380152.3:c.6401A>G	p.Asn2134Ser	p.N2134S	ENST00000380152		2134	aAt/aGt																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134523	41134523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1263390525		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	46	559	0	ENST00000379561.5:c.1105G>A	p.Glu369Lys	p.E369K	ENST00000379561	NM_002015.3	369	Gaa/Aaa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73340168	73340168	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs770832001		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	37	343	0	ENST00000377767.4:c.1912C>T	p.Arg638Ter	p.R638*	ENST00000377767	NM_014953.3	638	Cga/Tga																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514495	103514495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	40	313	0	ENST00000355739.4:c.996G>T	p.Glu332Asp	p.E332D	ENST00000355739	NM_000123.3	332	gaG/gaT																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514895	103514895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	42	446	0	ENST00000355739.4:c.1396G>A	p.Glu466Lys	p.E466K	ENST00000355739	NM_000123.3	466	Gag/Aag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775996769		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	34	419	0	ENST00000355739.4:c.1537G>A	p.Ala513Thr	p.A513T	ENST00000355739	NM_000123.3	513	Gca/Aca																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434842	110434842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	64	688	0	ENST00000375856.3:c.3559G>A	p.Glu1187Lys	p.E1187K	ENST00000375856	NM_003749.2	1187	Gag/Aag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435606	110435606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	47	277	0	ENST00000375856.3:c.2795C>T	p.Ser932Leu	p.S932L	ENST00000375856	NM_003749.2	932	tCg/tTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436662	110436662	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1172028943		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	114	957	2	ENST00000375856.3:c.1739C>T	p.Thr580Met	p.T580M	ENST00000375856	NM_003749.2	580	aCg/aTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046638	30046638	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1419328188		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	60	597	0	ENST00000331968.5:c.2545C>T	p.Arg849Ter	p.R849*	ENST00000331968	NM_002742.2	849	Cga/Tga																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066913	30066913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	58	645	1	ENST00000331968.5:c.2218C>T	p.Arg740Trp	p.R740W	ENST00000331968	NM_002742.2	740	Cgg/Tgg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068315	30068315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141649026		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	35	404	0	ENST00000331968.5:c.2084G>A	p.Arg695Gln	p.R695Q	ENST00000331968	NM_002742.2	695	cGg/cAg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988308	36988309	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1418373503		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	37	463	0	ENST00000354822.5:c.344dup	p.Tyr116LeufsTer323	p.Y116Lfs*323	ENST00000354822	NM_001079668.2	115	ggc/ggGc																																																																														
MAX	4149	MSKCC	GRCh37	14	65569030	65569030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	31	508	0	ENST00000358664.4:c.28G>A	p.Glu10Lys	p.E10K	ENST00000358664	NM_002382.4	10	Gag/Aag																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68290283	68290283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867530891		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	38	472	0	ENST00000487270.1:c.23G>A	p.Arg8Gln	p.R8Q	ENST00000487270	NM_133509.3	8	cGa/cAa																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68353842	68353842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	67	470	0	ENST00000487270.1:c.677G>A	p.Gly226Asp	p.G226D	ENST00000487270	NM_133509.3	226	gGc/gAc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609554	81609554	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	52	554	0	ENST00000298171.2:c.1152T>G	p.His384Gln	p.H384Q	ENST00000298171	NM_000369.2	384	caT/caG																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610143	81610143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	45	436	0	ENST00000298171.2:c.1741G>A	p.Ala581Thr	p.A581T	ENST00000298171	NM_000369.2	581	Gca/Aca																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571498	95571498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	61	452	1	ENST00000343455.3:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000343455	NM_177438.2	1060	cGc/cAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95592924	95592924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755944755		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	27	426	0	ENST00000343455.3:c.896C>T	p.Ser299Leu	p.S299L	ENST00000343455	NM_177438.2	299	tCg/tTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95595941	95595941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749484792		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	31	466	0	ENST00000343455.3:c.602G>A	p.Arg201His	p.R201H	ENST00000343455	NM_177438.2	201	cGc/cAc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614595	38614595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	40	589	0	ENST00000299084.4:c.361G>T	p.Glu121Ter	p.E121*	ENST00000299084	NM_152594.2	121	Gag/Tag																																																																														
MGA	23269	MSKCC	GRCh37	15	42054042	42054042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	17	360	0	ENST00000219905.7:c.7504C>A	p.Leu2502Ile	p.L2502I	ENST00000219905	NM_001164273.1	2502	Ctt/Att																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707822	43707822	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs746063219		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	69	829	1	ENST00000382044.4:c.5059C>T	p.Arg1687Ter	p.R1687*	ENST00000382044	NM_001141980.1	1687	Cga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748923	43748923	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774605101		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	114	966	0	ENST00000382044.4:c.1883C>T	p.Ser628Leu	p.S628L	ENST00000382044	NM_001141980.1	628	tCg/tTg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457330	67457330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	100	765	0	ENST00000327367.4:c.304G>A	p.Glu102Lys	p.E102K	ENST00000327367	NM_005902.3	102	Gag/Aag																																																																														
CD276	80381	MSKCC	GRCh37	15	73995416	73995416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	66	513	0	ENST00000318443.5:c.722G>T	p.Arg241Ile	p.R241I	ENST00000318443	NM_001024736.1	241	aGa/aTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726698	88726698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375475747		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	116	526	0	ENST00000360948.2:c.346C>T	p.Arg116Trp	p.R116W	ENST00000360948	NM_001012338.2	116	Cgg/Tgg																																																																														
IDH2	3418	MSKCC	GRCh37	15	90628529	90628529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1220662107		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	70	850	0	ENST00000330062.3:c.1058G>A	p.Arg353His	p.R353H	ENST00000330062	NM_002168.2	353	cGc/cAc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90628548	90628548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767061831		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	75	843	2	ENST00000330062.3:c.1039G>A	p.Ala347Thr	p.A347T	ENST00000330062	NM_002168.2	347	Gct/Act																																																																														
BLM	641	MSKCC	GRCh37	15	91290720	91290720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs139282091		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	20	327	0	ENST00000355112.3:c.98C>T	p.Ser33Leu	p.S33L	ENST00000355112	NM_000057.2	33	tCa/tTa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250976	99250976	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776250673		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	75	711	0	ENST00000268035.6:c.280G>A	p.Glu94Lys	p.E94K	ENST00000268035	NM_000875.3	94	Gag/Aag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251057	99251057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	52	697	0	ENST00000268035.6:c.361G>A	p.Glu121Lys	p.E121K	ENST00000268035	NM_000875.3	121	Gag/Aag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465390	99465390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	43	487	0	ENST00000268035.6:c.2215C>T	p.Arg739Trp	p.R739W	ENST00000268035	NM_000875.3	739	Cgg/Tgg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500303	99500303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61740868		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	50	779	1	ENST00000268035.6:c.3736C>T	p.Arg1246Cys	p.R1246C	ENST00000268035	NM_000875.3	1246	Cgc/Tgc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343707	343707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758124815		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	83	1002	1	ENST00000262320.3:c.1967C>T	p.Thr656Met	p.T656M	ENST00000262320	NM_003502.3	656	aCg/aTg																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2094713	2094713	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748576083		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	100	931	1	ENST00000219066.1:c.467C>T	p.Ala156Val	p.A156V	ENST00000219066	NM_002528.5	156	gCg/gTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134391	2134391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397515033		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	110	994	1	ENST00000219476.3:c.4168G>A	p.Glu1390Lys	p.E1390K	ENST00000219476	NM_000548.3	1390	Gag/Aag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3645613	3645613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200807331		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	73	809	0	ENST00000294008.3:c.2006G>A	p.Arg669His	p.R669H	ENST00000294008	NM_032444.2	669	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778977	3778977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745551441		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	39	718	0	ENST00000262367.5:c.6071C>T	p.Ala2024Val	p.A2024V	ENST00000262367	NM_004380.2	2024	gCg/gTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3823855	3823855	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117910358		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	70	844	2	ENST00000262367.5:c.2360C>T	p.Ala787Val	p.A787V	ENST00000262367	NM_004380.2	787	gCg/gTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832792	3832792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	65	611	0	ENST00000262367.5:c.1466G>A	p.Gly489Glu	p.G489E	ENST00000262367	NM_004380.2	489	gGa/gAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843447	3843447	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587783461		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	39	539	0	ENST00000262367.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000262367	NM_004380.2	386	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032401	10032404	+	missense_variant	Missense_Mutation	ONP	GTCG	GTCG	ATCA	rs78631453		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	28	413	0	ENST00000330684.3:c.419_422delinsTGAT	p.Pro140_Thr141delinsLeuMet	p.P140_T141delinsLM	ENST00000330684	NM_001134407.1	140	cCGACg/cTGATg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23635373	23635373	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060502786		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	54	700	0	ENST00000261584.4:c.2791C>T	p.Leu931Phe	p.L931F	ENST00000261584	NM_024675.3	931	Ctc/Ttc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646205	23646205	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	54	544	0	ENST00000261584.4:c.1662A>T	p.Glu554Asp	p.E554D	ENST00000261584	NM_024675.3	554	gaA/gaT																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646797	23646797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	68	774	0	ENST00000261584.4:c.1070C>A	p.Ser357Tyr	p.S357Y	ENST00000261584	NM_024675.3	357	tCt/tAt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650710	67650710	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1243010179		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	78	689	0	ENST00000264010.4:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000264010	NM_006565.3	339	Cgg/Tgg																																																																														
CDH1	999	MSKCC	GRCh37	16	68863691	68863691	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	48	493	0	ENST00000261769.5:c.2430T>G	p.Phe810Leu	p.F810L	ENST00000261769	NM_004360.3	810	ttT/ttG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829497	72829497	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761486040		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	76	693	0	ENST00000268489.5:c.7084G>A	p.Asp2362Asn	p.D2362N	ENST00000268489	NM_006885.3	2362	Gac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829641	72829641	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	56	769	0	ENST00000268489.5:c.6940G>T	p.Glu2314Ter	p.E2314*	ENST00000268489	NM_006885.3	2314	Gag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830892	72830892	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150923130		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	62	654	0	ENST00000268489.5:c.5689G>A	p.Glu1897Lys	p.E1897K	ENST00000268489	NM_006885.3	1897	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830958	72830958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1393698686		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	40	572	1	ENST00000268489.5:c.5623G>A	p.Glu1875Lys	p.E1875K	ENST00000268489	NM_006885.3	1875	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832571	72832571	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764024381		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	53	431	0	ENST00000268489.5:c.4010G>A	p.Ser1337Asn	p.S1337N	ENST00000268489	NM_006885.3	1337	aGc/aAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992208	72992208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761739295		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	80	862	1	ENST00000268489.5:c.1837G>A	p.Asp613Asn	p.D613N	ENST00000268489	NM_006885.3	613	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993279	72993279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764820053		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	89	997	1	ENST00000268489.5:c.766G>A	p.Val256Ile	p.V256I	ENST00000268489	NM_006885.3	256	Gta/Ata																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993567	72993567	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780566431		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	46	761	0	ENST00000268489.5:c.478G>A	p.Gly160Ser	p.G160S	ENST00000268489	NM_006885.3	160	Ggc/Agc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348200	89348200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	101	907	0	ENST00000301030.4:c.4750G>A	p.Glu1584Lys	p.E1584K	ENST00000301030	NM_001256183.1	1584	Gag/Aag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89806506	89806506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	54	479	0	ENST00000389301.3:c.3830G>T	p.Ser1277Ile	p.S1277I	ENST00000389301	NM_000135.2	1277	aGc/aTc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89857867	89857867	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148473140		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	58	808	3	ENST00000389301.3:c.1303C>T	p.Arg435Cys	p.R435C	ENST00000389301	NM_000135.2	435	Cgc/Tgc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217414	7217414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	65	677	0	ENST00000380728.2:c.382C>A	p.Leu128Ile	p.L128I	ENST00000380728		128	Ctc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	113	858	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	95	843	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11958211	11958211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	24	402	0	ENST00000353533.5:c.121C>T	p.Arg41Cys	p.R41C	ENST00000353533	NM_003010.3	41	Cgc/Tgc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028639	12028639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	38	484	0	ENST00000353533.5:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000353533	NM_003010.3	281	cGa/cAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049799	16049799	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	38	459	0	ENST00000268712.3:c.973A>C	p.Ile325Leu	p.I325L	ENST00000268712	NM_006311.3	325	Ata/Cta																																																																														
NF1	4763	MSKCC	GRCh37	17	29559876	29559876	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	29	354	0	ENST00000358273.4:c.3473A>G	p.Asp1158Gly	p.D1158G	ENST00000358273	NM_001042492.2	1158	gAc/gGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29588752	29588752	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867955218		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	30	344	0	ENST00000358273.4:c.4601G>A	p.Arg1534Gln	p.R1534Q	ENST00000358273	NM_001042492.2	1534	cGa/cAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618410	37618410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	35	511	0	ENST00000447079.4:c.86G>A	p.Ser29Asn	p.S29N	ENST00000447079	NM_015083.1	29	aGc/aAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627835	37627835	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	76	684	0	ENST00000447079.4:c.1750T>G	p.Leu584Val	p.L584V	ENST00000447079	NM_015083.1	584	Ttg/Gtg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676315	37676315	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201479472		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	99	690	0	ENST00000447079.4:c.3070G>A	p.Glu1024Lys	p.E1024K	ENST00000447079	NM_015083.1	1024	Gaa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	83	905	3	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	193	900	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883719	37883719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143958183		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	69	1005	0	ENST00000269571.5:c.3331C>T	p.Arg1111Trp	p.R1111W	ENST00000269571		1111	Cgg/Tgg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441476	40441476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	70	783	1	ENST00000345506.4:c.47G>A	p.Arg16His	p.R16H	ENST00000345506	NM_003152.3	16	cGc/cAc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40461406	40461406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	91	818	0	ENST00000345506.4:c.2126C>A	p.Ala709Glu	p.A709E	ENST00000345506	NM_003152.3	709	gCa/gAa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489466	40489466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	63	600	0	ENST00000264657.5:c.784C>T	p.Arg262Trp	p.R262W	ENST00000264657	NM_139276.2	262	Cgg/Tgg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234450	41234450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs4986849		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	46	538	0	ENST00000357654.3:c.4328G>A	p.Arg1443Gln	p.R1443Q	ENST00000357654	NM_007294.3	1443	cGa/cAa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699348	47699348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	36	491	0	ENST00000347630.2:c.160A>C	p.Ser54Arg	p.S54R	ENST00000347630	NM_001007230.1	54	Agt/Cgt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780637	56780637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	37	675	0	ENST00000337432.4:c.652G>A	p.Glu218Lys	p.E218K	ENST00000337432	NM_058216.2	218	Gag/Aag																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780650	56780650	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	37	637	0	ENST00000337432.4:c.665A>G	p.Gln222Arg	p.Q222R	ENST00000337432	NM_058216.2	222	cAa/cGa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740837	58740837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200809297		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	95	604	0	ENST00000305921.3:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000305921	NM_003620.3	581	cGa/cAa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59770824	59770824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45572934		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	42	468	0	ENST00000259008.2:c.2542C>T	p.Arg848Cys	p.R848C	ENST00000259008	NM_032043.2	848	Cgc/Tgc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63530163	63530163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145007501		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	66	602	1	ENST00000307078.5:c.2272G>A	p.Ala758Thr	p.A758T	ENST00000307078	NM_004655.3	758	Gcg/Acg																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526514	66526514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	51	502	0	ENST00000358598.2:c.1070G>A	p.Arg357His	p.R357H	ENST00000358598	NM_212471.2	357	cGt/cAt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78811795	78811795	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	56	527	0	ENST00000306801.3:c.1210C>T	p.Arg404Trp	p.R404W	ENST00000306801	NM_020761.2	404	Cgg/Tgg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78867626	78867626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781190662		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	108	983	1	ENST00000306801.3:c.2362C>T	p.Arg788Cys	p.R788C	ENST00000306801	NM_020761.2	788	Cgc/Tgc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78931513	78931513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750857501		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	71	765	0	ENST00000306801.3:c.3460C>T	p.Arg1154Cys	p.R1154C	ENST00000306801	NM_020761.2	1154	Cgt/Tgt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395686	45395686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200841904		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	34	414	1	ENST00000262160.6:c.448G>A	p.Glu150Lys	p.E150K	ENST00000262160	NM_005901.5	150	Gaa/Aaa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45423021	45423021	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	29	409	0	ENST00000262160.6:c.107A>G	p.Gln36Arg	p.Q36R	ENST00000262160	NM_005901.5	36	cAg/cGg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56390363	56390363	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs902013273		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	39	399	0	ENST00000348428.3:c.1102G>A	p.Glu368Lys	p.E368K	ENST00000348428	NM_006785.3	368	Gaa/Aaa																																																																														
BCL2	596	MSKCC	GRCh37	18	60795959	60795959	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748122615		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	48	573	2	ENST00000333681.4:c.619C>T	p.Arg207Trp	p.R207W	ENST00000333681		207	Cgg/Tgg																																																																														
STK11	6794	MSKCC	GRCh37	19	1220701	1220701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	100	819	4	ENST00000326873.7:c.719C>T	p.Ser240Leu	p.S240L	ENST00000326873	NM_000455.4	240	tCg/tTg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1632108	1632108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	76	858	0	ENST00000344749.5:c.227G>T	p.Ser76Ile	p.S76I	ENST00000344749	NM_001136139.2	76	aGc/aTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210773	2210773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745490701		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	76	720	2	ENST00000398665.3:c.1270C>T	p.Arg424Trp	p.R424W	ENST00000398665	NM_032482.2	424	Cgg/Tgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216388	2216388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753135719		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	65	898	0	ENST00000398665.3:c.2032G>A	p.Ala678Thr	p.A678T	ENST00000398665	NM_032482.2	678	Gcc/Acc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226316	2226316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376487667		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	74	980	1	ENST00000398665.3:c.3796G>A	p.Ala1266Thr	p.A1266T	ENST00000398665	NM_032482.2	1266	Gcc/Acc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3115036	3115036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1317391449		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	101	964	0	ENST00000078429.4:c.571G>A	p.Glu191Lys	p.E191K	ENST00000078429	NM_002067.2	191	Gag/Aag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215422	5215422	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	61	668	0	ENST00000357368.4:c.4196C>T	p.Ser1399Phe	p.S1399F	ENST00000357368	NM_002850.3	1399	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231588	5231588	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772048652		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	53	379	0	ENST00000357368.4:c.1888G>A	p.Val630Met	p.V630M	ENST00000357368	NM_002850.3	630	Gtg/Atg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5239059	5239059	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768636218		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	139	764	0	ENST00000357368.4:c.1720G>A	p.Asp574Asn	p.D574N	ENST00000357368	NM_002850.3	574	Gac/Aac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5265024	5265024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1054150595		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	60	684	0	ENST00000357368.4:c.563G>A	p.Arg188Gln	p.R188Q	ENST00000357368	NM_002850.3	188	cGa/cAa																																																																														
INSR	3643	MSKCC	GRCh37	19	7117159	7117159	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs74495977		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	64	805	0	ENST00000302850.5:c.4057C>T	p.Arg1353Trp	p.R1353W	ENST00000302850	NM_000208.2	1353	Cgg/Tgg																																																																														
INSR	3643	MSKCC	GRCh37	19	7163154	7163154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	83	782	0	ENST00000302850.5:c.1918C>A	p.Leu640Met	p.L640M	ENST00000302850	NM_000208.2	640	Ctg/Atg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10244971	10244971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	49	671	1	ENST00000340748.4:c.4738G>A	p.Val1580Met	p.V1580M	ENST00000340748		1580	Gtg/Atg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10286250	10286250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781646588		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	64	742	0	ENST00000340748.4:c.566C>T	p.Ser189Leu	p.S189L	ENST00000340748		189	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100004	11100004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	68	761	1	ENST00000344626.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000344626	NM_003072.3	377	cGc/cAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11169474	11169474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	93	784	0	ENST00000344626.4:c.4544G>A	p.Arg1515His	p.R1515H	ENST00000344626	NM_003072.3	1515	cGc/cAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170837	11170837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374648988		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	77	750	0	ENST00000344626.4:c.4885G>A	p.Asp1629Asn	p.D1629N	ENST00000344626	NM_003072.3	1629	Gat/Aat																																																																														
CALR	811	MSKCC	GRCh37	19	13054535	13054535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	48	441	0	ENST00000316448.5:c.1062G>T	p.Glu354Asp	p.E354D	ENST00000316448	NM_004343.3	354	gaG/gaT																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626895	14626895	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143320658		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	91	833	0	ENST00000254322.2:c.880C>T	p.Arg294Trp	p.R294W	ENST00000254322	NM_006145.1	294	Cgg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271769	15271769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	80	1116	0	ENST00000263388.2:c.6670G>A	p.Ala2224Thr	p.A2224T	ENST00000263388	NM_000435.2	2224	Gct/Act																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276764	15276764	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202027632		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	92	888	1	ENST00000263388.2:c.5501G>A	p.Arg1834Gln	p.R1834Q	ENST00000263388	NM_000435.2	1834	cGg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296403	15296403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs10406745		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	86	990	3	ENST00000263388.2:c.2039G>A	p.Arg680His	p.R680H	ENST00000263388	NM_000435.2	680	cGc/cAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367867	15367867	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1454979767		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	92	912	1	ENST00000263377.2:c.1459G>A	p.Asp487Asn	p.D487N	ENST00000263377	NM_058243.2	487	Gac/Aac																																																																														
BRD4	23476	MSKCC	GRCh37	19	15379843	15379843	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	31	367	0	ENST00000263377.2:c.296A>C	p.Lys99Thr	p.K99T	ENST00000263377	NM_058243.2	99	aAg/aCg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945726	17945726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1178958564		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	106	958	0	ENST00000458235.1:c.2134G>A	p.Gly712Ser	p.G712S	ENST00000458235	NM_000215.3	712	Ggc/Agc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946851	17946851	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	151	691	0	ENST00000458235.1:c.1796T>C	p.Val599Ala	p.V599A	ENST00000458235	NM_000215.3	599	gTg/gCg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948867	17948867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	141	746	0	ENST00000458235.1:c.1575G>T	p.Glu525Asp	p.E525D	ENST00000458235	NM_000215.3	525	gaG/gaT																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273915	18273915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	59	781	0	ENST00000222254.8:c.1248G>T	p.Lys416Asn	p.K416N	ENST00000222254	NM_005027.3	416	aaG/aaT																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279935	18279935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	89	785	2	ENST00000222254.8:c.2018C>T	p.Thr673Met	p.T673M	ENST00000222254	NM_005027.3	673	aCg/aTg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976372	18976372	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	112	955	0	ENST00000262803.5:c.3022C>T	p.Arg1008Ter	p.R1008*	ENST00000262803	NM_002911.3	1008	Cga/Tga																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19258640	19258640	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs533071900		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	54	680	0	ENST00000162023.5:c.260C>T	p.Thr87Met	p.T87M	ENST00000162023		87	aCg/aTg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260102	19260102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371035718		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	63	942	3	ENST00000162023.5:c.191G>A	p.Arg64His	p.R64H	ENST00000162023		64	cGt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210808	36210808	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	95	1045	1	ENST00000222270.7:c.559G>T	p.Glu187Ter	p.E187*	ENST00000222270	NM_014727.1	187	Gaa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227815	36227815	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	82	962	0	ENST00000222270.7:c.7300G>A	p.Ala2434Thr	p.A2434T	ENST00000222270	NM_014727.1	2434	Gcg/Acg																																																																														
AXL	558	MSKCC	GRCh37	19	41726544	41726544	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs891614619		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	64	636	0	ENST00000301178.4:c.89C>T	p.Thr30Met	p.T30M	ENST00000301178	NM_021913.4	30	aCg/aTg																																																																														
ERF	2077	MSKCC	GRCh37	19	42752675	42752675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	52	785	0	ENST00000222329.4:c.1589T>C	p.Val530Ala	p.V530A	ENST00000222329	NM_006494.2	530	gTg/gCg																																																																														
ERF	2077	MSKCC	GRCh37	19	42752763	42752763	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760204780		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	90	981	1	ENST00000222329.4:c.1501G>A	p.Ala501Thr	p.A501T	ENST00000222329	NM_006494.2	501	Gct/Act																																																																														
CIC	23152	MSKCC	GRCh37	19	42793336	42793336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	52	832	0	ENST00000575354.2:c.1138G>A	p.Val380Met	p.V380M	ENST00000575354	NM_015125.3	380	Gtg/Atg																																																																														
CIC	23152	MSKCC	GRCh37	19	42795241	42795241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs574832764		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	67	941	0	ENST00000575354.2:c.2321C>T	p.Ala774Val	p.A774V	ENST00000575354	NM_015125.3	774	gCg/gTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42795423	42795423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	59	769	0	ENST00000575354.2:c.2503C>T	p.Gln835Ter	p.Q835*	ENST00000575354	NM_015125.3	835	Cag/Tag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45864811	45864811	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	117	1098	0	ENST00000391945.4:c.1208T>G	p.Phe403Cys	p.F403C	ENST00000391945	NM_000400.3	403	tTt/tGt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909674	50909674	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199700312		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	108	938	0	ENST00000440232.2:c.1394G>A	p.Arg465Gln	p.R465Q	ENST00000440232	NM_002691.3	465	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918795	50918795	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777468034		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	81	939	1	ENST00000440232.2:c.2665C>T	p.Arg889Cys	p.R889C	ENST00000440232	NM_002691.3	889	Cgc/Tgc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52705255	52705255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	81	645	0	ENST00000322088.6:c.137G>T	p.Arg46Met	p.R46M	ENST00000322088	NM_014225.5	46	aGg/aTg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25466773	25466773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1431156021		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	68	616	0	ENST00000264709.3:c.1930G>A	p.Ala644Thr	p.A644T	ENST00000264709	NM_175629.2	644	Gct/Act																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467047	25467047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	78	789	1	ENST00000264709.3:c.1828G>A	p.Ala610Thr	p.A610T	ENST00000264709	NM_175629.2	610	Gct/Act																																																																														
CENPA	1058	MSKCC	GRCh37	2	27015097	27015097	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	37	487	0	ENST00000335756.4:c.199T>G	p.Phe67Val	p.F67V	ENST00000335756	NM_001809.3	67	Ttc/Gtc																																																																														
ALK	238	MSKCC	GRCh37	2	29420510	29420510	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758127441		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	57	463	0	ENST00000389048.3:c.3971C>T	p.Ser1324Phe	p.S1324F	ENST00000389048	NM_004304.4	1324	tCt/tTt																																																																														
ALK	238	MSKCC	GRCh37	2	29498318	29498318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	79	611	0	ENST00000389048.3:c.1862C>T	p.Ala621Val	p.A621V	ENST00000389048	NM_004304.4	621	gCc/gTc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607453	46607453	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150597114		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	72	1054	0	ENST00000263734.3:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000263734	NM_001430.4	548	Gag/Aag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47657021	47657021	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146567853		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	33	369	0	ENST00000233146.2:c.1217G>A	p.Arg406Gln	p.R406Q	ENST00000233146	NM_000251.2	406	cGa/cAa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47709939	47709939	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1230083633		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	23	356	0	ENST00000233146.2:c.2656G>A	p.Glu886Lys	p.E886K	ENST00000233146	NM_000251.2	886	Gag/Aag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026606	48026606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1358771617		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	34	489	0	ENST00000234420.5:c.1484G>A	p.Arg495Gln	p.R495Q	ENST00000234420	NM_000179.2	495	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	50	516	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48032168	48032169	+	splice_donor_variant,intron_variant	Splice_Site	DNP	TG	TG	CA			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	51	294	0	ENST00000234420.5:c.3556+2_3556+3inv		p.X1186_splice	ENST00000234420	NM_000179.2	1186																																																																															
REL	5966	MSKCC	GRCh37	2	61128147	61128147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1016724251		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	38	294	0	ENST00000295025.8:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000295025	NM_002908.2	108	cGa/cAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	48	653	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96919611	96919611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746291260		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	60	626	0	ENST00000258439.3:c.652G>A	p.Glu218Lys	p.E218K	ENST00000258439	NM_001193304.2	218	Gag/Aag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99163079	99163079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1403218618		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	63	572	0	ENST00000074304.5:c.1085C>T	p.Ala362Val	p.A362V	ENST00000074304	NM_001134224.1	362	gCg/gTg																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872492	136872492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	25	365	0	ENST00000241393.3:c.1006G>A	p.Gly336Arg	p.G336R	ENST00000241393	NM_003467.2	336	Gga/Aga																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634767	158634767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	36	423	1	ENST00000263640.3:c.419G>A	p.Cys140Tyr	p.C140Y	ENST00000263640	NM_001105.4	140	tGc/tAc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096649	178096649	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	26	312	0	ENST00000397062.3:c.682T>G	p.Phe228Val	p.F228V	ENST00000397062	NM_006164.4	228	Ttt/Gtt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719032	190719032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	44	257	0	ENST00000441310.2:c.1034C>A	p.Ser345Tyr	p.S345Y	ENST00000441310	NM_000534.4	345	tCt/tAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257714	198257714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	29	336	0	ENST00000335508.6:c.3738G>A	p.Met1246Ile	p.M1246I	ENST00000335508	NM_012433.2	1246	atG/atA																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274548	198274548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778869024		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	65	653	1	ENST00000335508.6:c.850G>A	p.Ala284Thr	p.A284T	ENST00000335508	NM_012433.2	284	Gca/Aca																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198283309	198283309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	26	471	0	ENST00000335508.6:c.419G>A	p.Gly140Glu	p.G140E	ENST00000335508	NM_012433.2	140	gGg/gAg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339962485		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	61	587	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																														
CASP8	841	MSKCC	GRCh37	2	202136279	202136279	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	58	549	0	ENST00000358485.4:c.523G>T	p.Glu175Ter	p.E175*	ENST00000358485	NM_001080125.1	175	Gaa/Taa																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735643	204735643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	25	471	0	ENST00000302823.3:c.444G>T	p.Gln148His	p.Q148H	ENST00000302823	NM_005214.4	148	caG/caT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212293194	212293194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	34	391	0	ENST00000342788.4:c.2658G>T	p.Trp886Cys	p.W886C	ENST00000342788	NM_005235.2	886	tgG/tgT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295729	212295729	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	77	635	0	ENST00000342788.4:c.2584T>G	p.Phe862Val	p.F862V	ENST00000342788	NM_005235.2	862	Ttt/Gtt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543828	212543828	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371593463		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	85	402	1	ENST00000342788.4:c.1571G>A	p.Arg524His	p.R524H	ENST00000342788	NM_005235.2	524	cGc/cAc																																																																														
BARD1	580	MSKCC	GRCh37	2	215617226	215617226	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777937955		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	19	348	0	ENST00000260947.4:c.1622C>T	p.Ser541Leu	p.S541L	ENST00000260947	NM_000465.2	541	tCg/tTg																																																																														
BARD1	580	MSKCC	GRCh37	2	215645592	215645592	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs752869298		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	46	726	0	ENST00000260947.4:c.1006T>C	p.Cys336Arg	p.C336R	ENST00000260947	NM_000465.2	336	Tgt/Cgt																																																																														
INHA	3623	MSKCC	GRCh37	2	220437265	220437265	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1224525818		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	102	1118	1	ENST00000243786.2:c.169C>T	p.Arg57Trp	p.R57W	ENST00000243786	NM_002191.3	57	Cgg/Tgg																																																																														
INHA	3623	MSKCC	GRCh37	2	220437275	220437275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370513243		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	101	1115	1	ENST00000243786.2:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000243786	NM_002191.3	60	cGa/cAa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422458	225422458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	35	483	2	ENST00000264414.4:c.182C>T	p.Ala61Val	p.A61V	ENST00000264414	NM_003590.4	61	gCa/gTa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661564	227661564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	48	849	0	ENST00000305123.5:c.1891G>T	p.Asp631Tyr	p.D631Y	ENST00000305123	NM_005544.2	631	Gac/Tac																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662349	227662349	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1295685737		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	51	742	0	ENST00000305123.5:c.1106T>C	p.Leu369Pro	p.L369P	ENST00000305123	NM_005544.2	369	cTc/cCc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662792	227662792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	111	834	0	ENST00000305123.5:c.663C>A	p.Phe221Leu	p.F221L	ENST00000305123	NM_005544.2	221	ttC/ttA																																																																														
PAK7	0	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773981325		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	33	543	0	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31372582	31372582	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751017290		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	57	735	0	ENST00000328111.2:c.223G>A	p.Asp75Asn	p.D75N	ENST00000328111	NM_006892.3	75	Gac/Aac																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386409	31386409	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs572676072		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	77	725	0	ENST00000328111.2:c.1634G>A	p.Arg545His	p.R545H	ENST00000328111	NM_006892.3	545	cGc/cAc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39728762	39728762	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	50	490	0	ENST00000361337.2:c.1042G>T	p.Glu348Ter	p.E348*	ENST00000361337	NM_003286.2	348	Gag/Tag																																																																														
TOP1	7150	MSKCC	GRCh37	20	39741455	39741455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	47	484	0	ENST00000361337.2:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000361337	NM_003286.2	448	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757416	40757416	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	98	659	0	ENST00000373198.4:c.2882A>G	p.Tyr961Cys	p.Y961C	ENST00000373198	NM_133170.3	961	tAc/tGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944419	40944419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	57	584	0	ENST00000373198.4:c.2083C>A	p.Leu695Ile	p.L695I	ENST00000373198	NM_133170.3	695	Ctc/Atc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46255889	46255889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	22	349	0	ENST00000371998.3:c.501G>T	p.Lys167Asn	p.K167N	ENST00000371998		167	aaG/aaT																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268333	46268333	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747268479		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	44	472	0	ENST00000371998.3:c.2720G>A	p.Arg907Gln	p.R907Q	ENST00000371998		907	cGa/cAa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484414	57484414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	72	565	0	ENST00000371085.3:c.595C>T	p.Arg199Cys	p.R199C	ENST00000371085	NM_000516.4	199	Cgc/Tgc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485873	57485873	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397514456		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	55	430	0	ENST00000371085.3:c.1174G>A	p.Glu392Lys	p.E392K	ENST00000371085	NM_000516.4	392	Gag/Aag																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319038	62319038	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs1219409480		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	124	1021	1	ENST00000482936.1:c.1396G>A	p.Glu466Lys	p.E466K	ENST00000482936		466	Gag/Aag																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62324513	62324513	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs398123018		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	121	999	2	ENST00000482936.1:c.2869C>T	p.Arg957Trp	p.R957W	ENST00000482936		957	Cgg/Tgg																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62326704	62326704	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	92	1181	1	ENST00000482936.1:c.3523G>T	p.Gly1175Trp	p.G1175W	ENST00000482936		1175	Ggg/Tgg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24143232	24143232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	71	854	0	ENST00000263121.7:c.464G>A	p.Arg155His	p.R155H	ENST00000263121	NM_003073.3	155	cGc/cAc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24167489	24167489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	100	833	0	ENST00000263121.7:c.873G>T	p.Glu291Asp	p.E291D	ENST00000263121	NM_003073.3	291	gaG/gaT																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29106023	29106023	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs587782152		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	27	355	0	ENST00000328354.6:c.817G>T	p.Glu273Ter	p.E273*	ENST00000328354	NM_007194.3	273	Gaa/Taa																																																																														
NF2	4771	MSKCC	GRCh37	22	30051621	30051621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	27	453	0	ENST00000338641.4:c.555G>T	p.Glu185Asp	p.E185D	ENST00000338641	NM_000268.3	185	gaG/gaT																																																																														
EP300	2033	MSKCC	GRCh37	22	41523507	41523507	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778261		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	49	550	0	ENST00000263253.7:c.923C>T	p.Pro308Leu	p.P308L	ENST00000263253	NM_001429.3	308	cCg/cTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41545781	41545781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	51	637	0	ENST00000263253.7:c.2396C>A	p.Ser799Tyr	p.S799Y	ENST00000263253	NM_001429.3	799	tCt/tAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41548259	41548259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	28	385	0	ENST00000263253.7:c.3047G>A	p.Ser1016Asn	p.S1016N	ENST00000263253	NM_001429.3	1016	aGc/aAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566561	41566561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753948138		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	33	376	0	ENST00000263253.7:c.4438G>A	p.Val1480Ile	p.V1480I	ENST00000263253	NM_001429.3	1480	Gtc/Atc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12447395	12447395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	55	574	0	ENST00000287820.6:c.634C>T	p.Arg212Trp	p.R212W	ENST00000287820	NM_015869.4	212	Cgg/Tgg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729875	30729875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	33	370	1	ENST00000359013.4:c.1472-1G>A		p.X491_splice	ENST00000359013	NM_001024847.2	491																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275291	41275291	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750554859		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	52	492	0	ENST00000349496.5:c.1457G>A	p.Arg486His	p.R486H	ENST00000349496	NM_001904.3	486	cGc/cAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275649	41275649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	49	476	0	ENST00000349496.5:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000349496	NM_001904.3	515	cGa/cAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278087	41278087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	46	415	0	ENST00000349496.5:c.1963G>A	p.Ala655Thr	p.A655T	ENST00000349496	NM_001904.3	655	Gca/Aca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47061275	47061275	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	51	488	0	ENST00000409792.3:c.7406A>G	p.Lys2469Arg	p.K2469R	ENST00000409792	NM_014159.6	2469	aAa/aGa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163758	47163758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	26	478	0	ENST00000409792.3:c.2368G>T	p.Asp790Tyr	p.D790Y	ENST00000409792	NM_014159.6	790	Gat/Tat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164477	47164477	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1445389349		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	35	431	0	ENST00000409792.3:c.1649G>A	p.Ser550Asn	p.S550N	ENST00000409792	NM_014159.6	550	aGt/aAt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49929190	49929190	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs55856544		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	102	776	0	ENST00000296474.3:c.3352+1G>A		p.X1118_splice	ENST00000296474	NM_002447.2	1118																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934723	49934723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	76	733	0	ENST00000296474.3:c.2173C>A	p.Leu725Met	p.L725M	ENST00000296474	NM_002447.2	725	Ctg/Atg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940814	49940814	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756348422		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	90	821	0	ENST00000296474.3:c.229C>T	p.Arg77Cys	p.R77C	ENST00000296474	NM_002447.2	77	Cgc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651490	52651490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	57	570	1	ENST00000394830.3:c.1606C>T	p.Pro536Ser	p.P536S	ENST00000394830	NM_018313.4	536	Cca/Tca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52677265	52677265	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs374515597		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	66	561	0	ENST00000394830.3:c.994C>T	p.Arg332Cys	p.R332C	ENST00000394830	NM_018313.4	332	Cgt/Tgt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021818	71021818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869025203		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	15	235	1	ENST00000318789.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000318789	NM_032682.5	514	Cgt/Tgt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026184	71026184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	40	329	0	ENST00000318789.4:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000318789	NM_032682.5	480	Gaa/Aaa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799481	72799481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144498351		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	64	742	1	ENST00000325599.8:c.1688G>A	p.Arg563His	p.R563H	ENST00000325599	NM_018130.2	563	cGc/cAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89444996	89444996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	42	476	2	ENST00000336596.2:c.1316C>A	p.Pro439His	p.P439H	ENST00000336596	NM_005233.5	439	cCt/cAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445111	89445111	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	31	344	0	ENST00000336596.2:c.1431G>T	p.Lys477Asn	p.K477N	ENST00000336596	NM_005233.5	477	aaG/aaT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468516	89468516	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1453560937		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	59	347	0	ENST00000336596.2:c.2050C>T	p.Arg684Ter	p.R684*	ENST00000336596	NM_005233.5	684	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498444	89498444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	33	370	0	ENST00000336596.2:c.2416G>A	p.Asp806Asn	p.D806N	ENST00000336596	NM_005233.5	806	Gat/Aat																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204594	128204594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148024280		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	69	829	0	ENST00000341105.2:c.847C>T	p.Arg283Cys	p.R283C	ENST00000341105	NM_032638.4	283	Cgc/Tgc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1415689583		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	42	536	1	ENST00000398015.3:c.251G>A	p.Arg84His	p.R84H	ENST00000398015	NM_004441.4	84	cGc/cAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670615	134670615	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781004053		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	80	815	0	ENST00000398015.3:c.526G>A	p.Ala176Thr	p.A176T	ENST00000398015	NM_004441.4	176	Gct/Act																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417934	138417934	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1194965901		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	36	360	0	ENST00000289153.2:c.1585C>T	p.Arg529Ter	p.R529*	ENST00000289153	NM_006219.2	529	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142188288	142188288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1470834016		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	36	423	0	ENST00000350721.4:c.6443G>A	p.Arg2148Gln	p.R2148Q	ENST00000350721	NM_001184.3	2148	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142188397	142188397	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1169255490		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	26	377	0	ENST00000350721.4:c.6334C>T	p.Arg2112Cys	p.R2112C	ENST00000350721	NM_001184.3	2112	Cgt/Tgt																																																																														
ATR	545	MSKCC	GRCh37	3	142216024	142216024	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	57	384	0	ENST00000350721.4:c.5569T>G	p.Leu1857Val	p.L1857V	ENST00000350721	NM_001184.3	1857	Tta/Gta																																																																														
ATR	545	MSKCC	GRCh37	3	142226828	142226828	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	41	465	0	ENST00000350721.4:c.4976A>C	p.Glu1659Ala	p.E1659A	ENST00000350721	NM_001184.3	1659	gAa/gCa																																																																														
ATR	545	MSKCC	GRCh37	3	142281762	142281762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	38	687	0	ENST00000350721.4:c.482G>A	p.Arg161Lys	p.R161K	ENST00000350721	NM_001184.3	161	aGa/aAa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260151	149260151	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1307297959		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	48	584	1	ENST00000360632.3:c.742C>T	p.Arg248Ter	p.R248*	ENST00000360632	NM_015472.4	248	Cga/Tga																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170020841	170020841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	21	266	0	ENST00000295797.4:c.1717A>G	p.Lys573Glu	p.K573E	ENST00000295797	NM_002740.5	573	Aag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	106	701	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	65	421	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951934	178951934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	46	497	0	ENST00000263967.3:c.2989C>T	p.Leu997Phe	p.L997F	ENST00000263967	NM_006218.2	997	Ctc/Ttc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431053	181431053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1226834656		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	47	832	1	ENST00000325404.1:c.905C>T	p.Pro302Leu	p.P302L	ENST00000325404	NM_003106.3	302	cCg/cTg																																																																														
BCL6	604	MSKCC	GRCh37	3	187442763	187442763	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	57	600	0	ENST00000232014.4:c.1943A>G	p.His648Arg	p.H648R	ENST00000232014	NM_001130845.1	648	cAc/cGc																																																																														
BCL6	604	MSKCC	GRCh37	3	187446301	187446301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374228382		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	54	726	0	ENST00000232014.4:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000232014	NM_001130845.1	463	Gag/Aag																																																																														
BCL6	604	MSKCC	GRCh37	3	187446976	187446976	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369842677		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	79	882	2	ENST00000232014.4:c.1217G>A	p.Arg406Gln	p.R406Q	ENST00000232014	NM_001130845.1	406	cGa/cAa																																																																														
BCL6	604	MSKCC	GRCh37	3	187447384	187447384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780987785		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	78	724	0	ENST00000232014.4:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000232014	NM_001130845.1	270	cGa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189455614	189455614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	43	558	0	ENST00000264731.3:c.148C>A	p.Leu50Ile	p.L50I	ENST00000264731	NM_003722.4	50	Ctc/Atc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	54	550	1	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																														
TP63	8626	MSKCC	GRCh37	3	189612035	189612035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773237715		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	62	590	3	ENST00000264731.3:c.1787C>T	p.Ala596Val	p.A596V	ENST00000264731	NM_003722.4	596	gCg/gTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189612268	189612268	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs972760958		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	51	484	0	ENST00000264731.3:c.2020C>T	p.Arg674Cys	p.R674C	ENST00000264731	NM_003722.4	674	Cgc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806243	1806243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778355		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	65	763	0	ENST00000260795.2:c.1262G>A	p.Arg421Gln	p.R421Q	ENST00000260795		421	cGa/cAa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806668	1806668	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771872811		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	80	1014	0	ENST00000260795.2:c.1384G>A	p.Asp462Asn	p.D462N	ENST00000260795		462	Gac/Aac																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902664	1902664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	95	863	1	ENST00000382895.3:c.283G>A	p.Asp95Asn	p.D95N	ENST00000382895	NM_133330.2	95	Gat/Aat																																																																														
WHSC1	0	MSKCC	GRCh37	4	1936914	1936914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	65	642	0	ENST00000382895.3:c.1599G>T	p.Gln533His	p.Q533H	ENST00000382895	NM_133330.2	533	caG/caT																																																																														
WHSC1	0	MSKCC	GRCh37	4	1956914	1956914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	92	830	0	ENST00000382895.3:c.2365C>T	p.Pro789Ser	p.P789S	ENST00000382895	NM_133330.2	789	Ccc/Tcc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1978254	1978254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754405808		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	74	912	2	ENST00000382895.3:c.3674C>T	p.Thr1225Met	p.T1225M	ENST00000382895	NM_133330.2	1225	aCg/aTg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980413	1980413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1373	76	1145	0	ENST00000382895.3:c.3875C>T	p.Ser1292Leu	p.S1292L	ENST00000382895	NM_133330.2	1292	tCg/tTg																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748270	41748270	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1338837491		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	124	846	0	ENST00000226382.2:c.499G>A	p.Ala167Thr	p.A167T	ENST00000226382	NM_003924.3	167	Gcc/Acc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141125	55141125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	29	362	0	ENST00000257290.5:c.1771G>T	p.Asp591Tyr	p.D591Y	ENST00000257290	NM_006206.4	591	Gat/Tat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152120	55152120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745464928		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	60	726	0	ENST00000257290.5:c.2552C>T	p.Ser851Leu	p.S851L	ENST00000257290	NM_006206.4	851	tCg/tTg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161380	55161380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376544204		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	49	597	1	ENST00000257290.5:c.3211G>A	p.Asp1071Asn	p.D1071N	ENST00000257290	NM_006206.4	1071	Gac/Aac																																																																														
KIT	3815	MSKCC	GRCh37	4	55598166	55598166	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	46	383	0	ENST00000288135.5:c.2361+2T>C		p.X787_splice	ENST00000288135	NM_000222.2	787																																																																															
KIT	3815	MSKCC	GRCh37	4	55602719	55602719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752695117		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	41	467	1	ENST00000288135.5:c.2540C>T	p.Thr847Met	p.T847M	ENST00000288135	NM_000222.2	847	aCg/aTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	51	558	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55958795	55958795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	59	584	0	ENST00000263923.4:c.3058G>A	p.Ala1020Thr	p.A1020T	ENST00000263923	NM_002253.2	1020	Gca/Aca																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509127	66509127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145126637		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	20	399	0	ENST00000273854.3:c.200G>A	p.Arg67His	p.R67H	ENST00000273854	NM_004439.5	67	cGc/cAc																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99802232	99802232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200243582		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	10	98	0	ENST00000280892.6:c.661G>A	p.Ala221Thr	p.A221T	ENST00000280892	NM_001130678.1	221	Gca/Aca																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99808294	99808294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	34	430	0	ENST00000280892.6:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000280892	NM_001130678.1	132	cGa/cAa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143094807	143094807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	41	346	0	ENST00000262992.4:c.1337C>A	p.Ser446Tyr	p.S446Y	ENST00000262992	NM_001101669.1	446	tCt/tAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245500	153245500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1304288466		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	43	554	1	ENST00000281708.4:c.1691G>A	p.Arg564His	p.R564H	ENST00000281708	NM_033632.3	564	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249411	153249411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	47	555	0	ENST00000281708.4:c.1367C>T	p.Thr456Ile	p.T456I	ENST00000281708	NM_033632.3	456	aCc/aTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517822	187517822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	43	396	0	ENST00000441802.2:c.12872C>T	p.Ser4291Phe	p.S4291F	ENST00000441802	NM_005245.3	4291	tCt/tTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521114	187521114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760053140		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	48	568	0	ENST00000441802.2:c.12041C>T	p.Thr4014Met	p.T4014M	ENST00000441802	NM_005245.3	4014	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534281	187534281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	57	542	0	ENST00000441802.2:c.9445G>A	p.Ala3149Thr	p.A3149T	ENST00000441802	NM_005245.3	3149	Gcc/Acc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542164	187542164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	28	501	1	ENST00000441802.2:c.5576C>A	p.Ala1859Asp	p.A1859D	ENST00000441802	NM_005245.3	1859	gCt/gAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549725	187549725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199516712		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	55	529	0	ENST00000441802.2:c.4516C>T	p.Arg1506Cys	p.R1506C	ENST00000441802	NM_005245.3	1506	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549832	187549832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371598532		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	41	472	1	ENST00000441802.2:c.4409C>T	p.Ala1470Val	p.A1470V	ENST00000441802	NM_005245.3	1470	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628071	187628071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	87	769	0	ENST00000441802.2:c.2911G>A	p.Glu971Lys	p.E971K	ENST00000441802	NM_005245.3	971	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628879	187628879	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	60	681	0	ENST00000441802.2:c.2103T>G	p.Asp701Glu	p.D701E	ENST00000441802	NM_005245.3	701	gaT/gaG																																																																														
SDHA	6389	MSKCC	GRCh37	5	223625	223625	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752532780		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	62	467	0	ENST00000264932.6:c.92G>A	p.Arg31Gln	p.R31Q	ENST00000264932	NM_004168.2	31	cGa/cAa																																																																														
SDHA	6389	MSKCC	GRCh37	5	233601	233601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	33	481	0	ENST00000264932.6:c.905G>A	p.Gly302Asp	p.G302D	ENST00000264932	NM_004168.2	302	gGt/gAt																																																																														
SDHA	6389	MSKCC	GRCh37	5	236696	236696	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143798161		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	60	322	2	ENST00000264932.6:c.1414G>A	p.Glu472Lys	p.E472K	ENST00000264932	NM_004168.2	472	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1293551	1293551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	111	1043	2	ENST00000310581.5:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000310581	NM_198253.2	484	Gaa/Aaa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31449442	31449442	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766022493		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	57	556	2	ENST00000344624.3:c.2767C>T	p.Arg923Trp	p.R923W	ENST00000344624		923	Cgg/Tgg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515145	31515145	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1202201920		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	83	855	0	ENST00000344624.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000344624		414	Cga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38981988	38981988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1263964007		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	47	480	0	ENST00000357387.3:c.734G>A	p.Arg245Gln	p.R245Q	ENST00000357387	NM_152756.3	245	cGa/cAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56174921	56174921	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1263184187		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	27	349	0	ENST00000399503.3:c.2080G>A	p.Ala694Thr	p.A694T	ENST00000399503	NM_005921.1	694	Gcc/Acc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753174	57753174	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	31	377	0	ENST00000274289.3:c.842A>T	p.Glu281Val	p.E281V	ENST00000274289	NM_006622.3	281	gAa/gTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	36	310	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589010	67589010	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	40	309	0	ENST00000274335.5:c.1101T>G	p.Asp367Glu	p.D367E	ENST00000274335		367	gaT/gaG																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628398	86628398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	23	321	0	ENST00000274376.6:c.767A>G	p.Tyr256Cys	p.Y256C	ENST00000274376	NM_002890.2	256	tAc/tGc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86649000	86649000	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755634472		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	20	353	0	ENST00000274376.6:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000274376	NM_002890.2	427	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112177697	112177697	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs780856653		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	30	388	0	ENST00000257430.4:c.6406C>A	p.Leu2136Ile	p.L2136I	ENST00000257430	NM_000038.5	2136	Ctt/Att																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924484	131924484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	43	443	0	ENST00000265335.6:c.1157G>A	p.Gly386Glu	p.G386E	ENST00000265335		386	gGa/gAa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460516	149460516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	74	875	3	ENST00000286301.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000286301	NM_005211.3	41	Cga/Tga																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176516607	176516607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs545721160		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	47	715	0	ENST00000292408.4:c.4C>T	p.Arg2Trp	p.R2W	ENST00000292408	NM_213647.1	2	Cgg/Tgg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030329	180030329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142322370		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	91	903	1	ENST00000261937.6:c.3955C>T	p.Arg1319Trp	p.R1319W	ENST00000261937	NM_182925.4	1319	Cgg/Tgg																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197474	26197474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	26	316	0	ENST00000356476.2:c.5C>T	p.Ala2Val	p.A2V	ENST00000356476		2	gCt/gTt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680247	30680247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	93	918	1	ENST00000376406.3:c.1472C>A	p.Pro491His	p.P491H	ENST00000376406	NM_014641.2	491	cCt/cAt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680721	30680721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61748586		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	61	659	2	ENST00000376406.3:c.998C>T	p.Ala333Val	p.A333V	ENST00000376406	NM_014641.2	333	gCg/gTg																																																																														
PIM1	5292	MSKCC	GRCh37	6	37139217	37139217	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	59	603	0	ENST00000373509.5:c.557A>G	p.Asp186Gly	p.D186G	ENST00000373509	NM_002648.3	186	gAc/gGc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43745295	43745295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs933893718		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	94	815	1	ENST00000523873.1:c.208G>A	p.Glu70Lys	p.E70K	ENST00000523873		70	Gag/Aag																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790697	89790697	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	118	1047	0	ENST00000336032.3:c.84C>A	p.Tyr28Ter	p.Y28*	ENST00000336032	NM_006813.2	28	taC/taA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964377	93964377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	27	457	1	ENST00000369303.4:c.2520G>A	p.Met840Ile	p.M840I	ENST00000369303	NM_004440.3	840	atG/atA																																																																														
FYN	2534	MSKCC	GRCh37	6	112020831	112020831	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770159855		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	48	449	0	ENST00000368678.4:c.740C>T	p.Ser247Leu	p.S247L	ENST00000368678		247	tCg/tTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662397	117662397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	31	620	0	ENST00000368508.3:c.4980G>T	p.Glu1660Asp	p.E1660D	ENST00000368508	NM_002944.2	1660	gaG/gaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678001	117678001	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62430836		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	43	576	0	ENST00000368508.3:c.3932G>A	p.Arg1311Gln	p.R1311Q	ENST00000368508	NM_002944.2	1311	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704494	117704494	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	27	422	0	ENST00000368508.3:c.2482T>C	p.Phe828Leu	p.F828L	ENST00000368508	NM_002944.2	828	Ttt/Ctt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708055	117708055	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	42	479	0	ENST00000368508.3:c.2122T>C	p.Ser708Pro	p.S708P	ENST00000368508	NM_002944.2	708	Tca/Cca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709050	117709050	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	71	560	0	ENST00000368508.3:c.1907T>C	p.Val636Ala	p.V636A	ENST00000368508	NM_002944.2	636	gTa/gCa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725528	117725528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	56	499	0	ENST00000368508.3:c.353G>T	p.Arg118Leu	p.R118L	ENST00000368508	NM_002944.2	118	cGa/cTa																																																																														
LATS1	9113	MSKCC	GRCh37	6	149982926	149982926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777519756		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	40	477	0	ENST00000253339.5:c.3332C>T	p.Ser1111Leu	p.S1111L	ENST00000253339		1111	tCg/tTg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005414	150005414	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	40	571	0	ENST00000253339.5:c.811A>C	p.Asn271His	p.N271H	ENST00000253339		271	Aac/Cac																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332821	152332821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	64	579	0	ENST00000206249.3:c.1127T>C	p.Val376Ala	p.V376A	ENST00000206249	NM_000125.3	376	gTc/gCc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527808	157527808	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766931727		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	31	568	0	ENST00000346085.5:c.5533C>T	p.Arg1845Cys	p.R1845C	ENST00000346085	NM_020732.3	1845	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55209991	55209991	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144158123		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	71	427	0	ENST00000275493.2:c.101C>T	p.Thr34Met	p.T34M	ENST00000275493	NM_005228.3	34	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227938	55227938	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	43	433	0	ENST00000275493.2:c.1405T>G	p.Leu469Val	p.L469V	ENST00000275493	NM_005228.3	469	Ttg/Gtg																																																																														
HGF	3082	MSKCC	GRCh37	7	81331991	81331991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	28	372	0	ENST00000222390.5:c.2093C>A	p.Ala698Asp	p.A698D	ENST00000222390	NM_000601.4	698	gCc/gAc																																																																														
HGF	3082	MSKCC	GRCh37	7	81335040	81335040	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751819844		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	33	417	0	ENST00000222390.5:c.1787C>T	p.Thr596Met	p.T596M	ENST00000222390	NM_000601.4	596	aCg/aTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81381489	81381489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	59	427	0	ENST00000222390.5:c.572C>T	p.Thr191Ile	p.T191I	ENST00000222390	NM_000601.4	191	aCa/aTa																																																																														
CDK6	1021	MSKCC	GRCh37	7	92404119	92404119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761377867		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	37	460	2	ENST00000265734.4:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000265734	NM_001259.6	87	cGa/cAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508284	106508284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	40	436	0	ENST00000359195.3:c.278C>T	p.Pro93Leu	p.P93L	ENST00000359195	NM_002649.2	93	cCg/cTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508535	106508535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	19	422	0	ENST00000359195.3:c.529C>T	p.Arg177Cys	p.R177C	ENST00000359195	NM_002649.2	177	Cgc/Tgc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106524619	106524619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	30	269	0	ENST00000359195.3:c.2780G>T	p.Arg927Ile	p.R927I	ENST00000359195	NM_002649.2	927	aGa/aTa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545618	106545618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	35	547	0	ENST00000359195.3:c.3095C>T	p.Ser1032Phe	p.S1032F	ENST00000359195	NM_002649.2	1032	tCc/tTc																																																																														
MET	4233	MSKCC	GRCh37	7	116414127	116414127	+	intron_variant	Intron	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	21	1078	0	ENST00000397752.3:c.3029-808G>A		p.*1010*	ENST00000397752	NM_000245.2																																																																																
SMO	6608	MSKCC	GRCh37	7	128850275	128850275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	92	853	0	ENST00000249373.3:c.1538C>T	p.Pro513Leu	p.P513L	ENST00000249373	NM_005631.4	513	cCg/cTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140494257	140494257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	78	939	0	ENST00000288602.6:c.991C>A	p.Leu331Ile	p.L331I	ENST00000288602	NM_004333.4	331	Ctc/Atc																																																																														
BRAF	673	MSKCC	GRCh37	7	140500228	140500228	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs547693139		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	79	657	1	ENST00000288602.6:c.914C>T	p.Ala305Val	p.A305V	ENST00000288602	NM_004333.4	305	gCg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859595	151859595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	54	558	0	ENST00000262189.6:c.11067C>A	p.Phe3689Leu	p.F3689L	ENST00000262189	NM_170606.2	3689	ttC/ttA																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38194888	38194888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	82	751	1	ENST00000317025.8:c.845C>A	p.Pro282His	p.P282H	ENST00000317025	NM_023034.1	282	cCt/cAt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275843	38275843	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781608303		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	84	754	0	ENST00000425967.3:c.1426C>T	p.Arg476Trp	p.R476W	ENST00000425967	NM_001174067.1	476	Cgg/Tgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002940	69002940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	50	303	0	ENST00000288368.4:c.2240G>A	p.Arg747Gln	p.R747Q	ENST00000288368	NM_024870.2	747	cGg/cAg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70967582	70967582	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	65	703	0	ENST00000276594.2:c.1441C>T	p.Arg481Ter	p.R481*	ENST00000276594	NM_024504.3	481	Cga/Tga																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859872	117859872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	26	280	1	ENST00000297338.2:c.1763C>T	p.Thr588Met	p.T588M	ENST00000297338	NM_006265.2	588	aCg/aTg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117874111	117874111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	22	417	0	ENST00000297338.2:c.343C>T	p.His115Tyr	p.H115Y	ENST00000297338	NM_006265.2	115	Cat/Tat																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738491	145738491	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1260068103		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	64	927	1	ENST00000428558.2:c.2494G>A	p.Val832Met	p.V832M	ENST00000428558	NM_004260.3	832	Gtg/Atg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5029797	5029797	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1438069581		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	23	467	0	ENST00000381652.3:c.241T>C	p.Tyr81His	p.Y81H	ENST00000381652	NM_004972.3	81	Tat/Cat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072541	5072541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368927897		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	27	454	0	ENST00000381652.3:c.1691G>A	p.Arg564Gln	p.R564Q	ENST00000381652	NM_004972.3	564	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341787	8341787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	57	629	1	ENST00000356435.5:c.4853C>T	p.Thr1618Ile	p.T1618I	ENST00000356435		1618	aCc/aTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484372	8484372	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	71	345	0	ENST00000356435.5:c.3160T>G	p.Tyr1054Asp	p.Y1054D	ENST00000356435		1054	Tat/Gat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633353	8633353	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	59	572	1	ENST00000356435.5:c.316G>T	p.Glu106Ter	p.E106*	ENST00000356435		106	Gaa/Taa																																																																														
TEK	7010	MSKCC	GRCh37	9	27185580	27185580	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	96	757	0	ENST00000380036.4:c.1280A>G	p.Asn427Ser	p.N427S	ENST00000380036	NM_000459.3	427	aAc/aGc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80343492	80343492	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	49	504	1	ENST00000286548.4:c.827A>C	p.Lys276Thr	p.K276T	ENST00000286548	NM_002072.3	276	aAa/aCa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317081	87317081	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201490630		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	38	427	0	ENST00000277120.3:c.220G>A	p.Ala74Thr	p.A74T	ENST00000277120		74	Gca/Aca																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635191	87635191	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367769334		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	78	664	0	ENST00000277120.3:c.2243C>T	p.Thr748Met	p.T748M	ENST00000277120		748	aCg/aTg																																																																														
SYK	6850	MSKCC	GRCh37	9	93650170	93650170	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs201765057		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	46	452	0	ENST00000375746.1:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000375746	NM_001174167.1	574	cGa/cAa																																																																														
SYK	6850	MSKCC	GRCh37	9	93657818	93657818	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	49	470	0	ENST00000375746.1:c.1844A>G	p.Asn615Ser	p.N615S	ENST00000375746	NM_001174167.1	615	aAc/aGc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98215892	98215892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769691754		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	72	687	0	ENST00000331920.6:c.3317C>T	p.Thr1106Met	p.T1106M	ENST00000331920	NM_000264.3	1106	aCg/aTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220390	98220390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	72	632	0	ENST00000331920.6:c.3073C>T	p.Arg1025Cys	p.R1025C	ENST00000331920	NM_000264.3	1025	Cgc/Tgc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98232209	98232209	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs960630296		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	40	403	0	ENST00000331920.6:c.1733C>T	p.Ala578Val	p.A578V	ENST00000331920	NM_000264.3	578	gCg/gTg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128347977	128347977	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs746222671		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	96	826	0	ENST00000265960.3:c.528G>T	p.Lys176Asn	p.K176N	ENST00000265960	NM_001006617.1	176	aaG/aaT																																																																														
ABL1	25	MSKCC	GRCh37	9	133759812	133759812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766513552		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	68	806	2	ENST00000318560.5:c.2135G>A	p.Arg712His	p.R712H	ENST00000318560	NM_005157.4	712	cGc/cAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135777046	135777046	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761281095		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	72	636	1	ENST00000298552.3:c.2432G>A	p.Arg811Gln	p.R811Q	ENST00000298552	NM_001162426.1	811	cGg/cAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391890	139391890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	84	985	6	ENST00000277541.6:c.6301G>A	p.Ala2101Thr	p.A2101T	ENST00000277541	NM_017617.3	2101	Gca/Aca																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399546	139399546	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764136623		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	51	684	1	ENST00000277541.6:c.4597G>A	p.Asp1533Asn	p.D1533N	ENST00000277541	NM_017617.3	1533	Gac/Aac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402764	139402764	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758471372		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	115	946	1	ENST00000277541.6:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000277541	NM_017617.3	1082	cGc/cAc																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139566734	139566734	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144969763		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	71	925	0	ENST00000308874.7:c.818C>T	p.Ser273Leu	p.S273L	ENST00000308874		273	tCg/tTg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139802531	139802531	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1193747361		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	85	778	0	ENST00000247668.2:c.376G>A	p.Glu126Lys	p.E126K	ENST00000247668	NM_021138.3	126	Gaa/Aaa																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814793	139814793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	64	839	0	ENST00000247668.2:c.786C>A	p.Ser262Arg	p.S262R	ENST00000247668	NM_021138.3	262	agC/agA																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321286	1321286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780766655		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	73	545	1	ENST00000381566.1:c.469G>A	p.Asp157Asn	p.D157N	ENST00000381566		157	Gac/Aac																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841136	15841136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	38	552	0	ENST00000307771.7:c.1220C>T	p.Ser407Phe	p.S407F	ENST00000307771	NM_005089.3	407	tCt/tTt																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20150342	20150342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	37	427	0	ENST00000379607.5:c.295G>A	p.Glu99Lys	p.E99K	ENST00000379607	NM_001412.3	99	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918695	44918695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746746824		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	84	481	0	ENST00000377967.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000377967	NM_021140.2	393	cGa/cAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928852	44928852	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750754452		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	90	445	1	ENST00000377967.4:c.1952C>T	p.Ser651Leu	p.S651L	ENST00000377967	NM_021140.2	651	tCg/tTg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426521	47426521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	58	872	1	ENST00000377045.4:c.864G>T	p.Lys288Asn	p.K288N	ENST00000377045	NM_001654.4	288	aaG/aaT																																																																														
GATA1	2623	MSKCC	GRCh37	X	48651658	48651658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	72	891	0	ENST00000376670.3:c.824G>A	p.Gly275Glu	p.G275E	ENST00000376670	NM_002049.3	275	gGg/gAg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222493	53222493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	80	877	0	ENST00000375401.3:c.4339G>A	p.Gly1447Arg	p.G1447R	ENST00000375401	NM_004187.3	1447	Ggg/Agg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223894	53223894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	89	1082	0	ENST00000375401.3:c.3465G>T	p.Gln1155His	p.Q1155H	ENST00000375401	NM_004187.3	1155	caG/caT																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228015	53228015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	84	914	0	ENST00000375401.3:c.2299G>A	p.Ala767Thr	p.A767T	ENST00000375401	NM_004187.3	767	Gct/Act																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228018	53228018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199422238		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	88	919	0	ENST00000375401.3:c.2296C>T	p.Arg766Trp	p.R766W	ENST00000375401	NM_004187.3	766	Cgg/Tgg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245080	53245080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	66	827	0	ENST00000375401.3:c.860C>T	p.Ser287Leu	p.S287L	ENST00000375401	NM_004187.3	287	tCg/tTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412029	63412029	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754922124		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	53	858	0	ENST00000330258.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000330258	NM_152424.3	380	Gag/Aag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412637	63412637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779222316		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	86	793	1	ENST00000330258.3:c.530G>A	p.Arg177His	p.R177H	ENST00000330258	NM_152424.3	177	cGc/cAc																																																																														
AR	367	MSKCC	GRCh37	X	66765122	66765122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	45	665	1	ENST00000374690.3:c.134C>T	p.Ala45Val	p.A45V	ENST00000374690	NM_000044.3	45	gCg/gTg																																																																														
AR	367	MSKCC	GRCh37	X	66765551	66765551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1455444688		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	85	967	1	ENST00000374690.3:c.563C>T	p.Ala188Val	p.A188V	ENST00000374690	NM_000044.3	188	gCc/gTc																																																																														
AR	367	MSKCC	GRCh37	X	66905884	66905884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	29	474	0	ENST00000374690.3:c.1801G>A	p.Asp601Asn	p.D601N	ENST00000374690	NM_000044.3	601	Gat/Aat																																																																														
AR	367	MSKCC	GRCh37	X	66942700	66942700	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200801099		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	46	538	0	ENST00000374690.3:c.2481C>A	p.Phe827Leu	p.F827L	ENST00000374690	NM_000044.3	827	ttC/ttA																																																																														
MED12	9968	MSKCC	GRCh37	X	70344959	70344959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	60	814	0	ENST00000374080.3:c.2189G>A	p.Arg730Gln	p.R730Q	ENST00000374080		730	cGa/cAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70354667	70354667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	70	743	1	ENST00000374080.3:c.4832G>A	p.Arg1611His	p.R1611H	ENST00000374080		1611	cGt/cAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76829787	76829787	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057517948		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	50	722	0	ENST00000373344.5:c.6254G>A	p.Arg2085His	p.R2085H	ENST00000373344	NM_000489.3	2085	cGt/cAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76829824	76829824	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	37	533	0	ENST00000373344.5:c.6218-1G>T		p.X2073_splice	ENST00000373344	NM_000489.3	2073																																																																															
ATRX	546	MSKCC	GRCh37	X	76907620	76907620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	40	528	0	ENST00000373344.5:c.4541G>A	p.Arg1514Gln	p.R1514Q	ENST00000373344	NM_000489.3	1514	cGa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937173	76937173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	50	676	0	ENST00000373344.5:c.3575G>T	p.Ser1192Ile	p.S1192I	ENST00000373344	NM_000489.3	1192	aGc/aTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938304	76938304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	34	672	1	ENST00000373344.5:c.2444C>T	p.Ser815Phe	p.S815F	ENST00000373344	NM_000489.3	815	tCt/tTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76938640	76938640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	73	651	0	ENST00000373344.5:c.2108C>A	p.Ser703Tyr	p.S703Y	ENST00000373344	NM_000489.3	703	tCt/tAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76939697	76939697	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	45	780	0	ENST00000373344.5:c.1051G>T	p.Glu351Ter	p.E351*	ENST00000373344	NM_000489.3	351	Gag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76940066	76940066	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	41	636	0	ENST00000373344.5:c.682A>T	p.Asn228Tyr	p.N228Y	ENST00000373344	NM_000489.3	228	Aac/Tac																																																																														
BTK	695	MSKCC	GRCh37	X	100609652	100609652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	107	522	1	ENST00000308731.7:c.1597G>T	p.Gly533Ter	p.G533*	ENST00000308731	NM_000061.2	533	Gga/Tga																																																																														
BTK	695	MSKCC	GRCh37	X	100613405	100613405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	50	708	0	ENST00000308731.7:c.995G>A	p.Arg332His	p.R332H	ENST00000308731	NM_000061.2	332	cGt/cAt																																																																														
BTK	695	MSKCC	GRCh37	X	100615095	100615095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	39	575	0	ENST00000308731.7:c.820G>T	p.Asp274Tyr	p.D274Y	ENST00000308731	NM_000061.2	274	Gac/Tac																																																																														
BTK	695	MSKCC	GRCh37	X	100615626	100615626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782467781		P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	48	642	1	ENST00000308731.7:c.706C>T	p.Arg236Trp	p.R236W	ENST00000308731	NM_000061.2	236	Cgg/Tgg																																																																														
XIAP	331	MSKCC	GRCh37	X	123020196	123020196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	56	774	1	ENST00000355640.3:c.684C>A	p.Phe228Leu	p.F228L	ENST00000355640		228	ttC/ttA																																																																														
XIAP	331	MSKCC	GRCh37	X	123020278	123020278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	41	666	0	ENST00000355640.3:c.766C>A	p.Leu256Ile	p.L256I	ENST00000355640		256	Ctt/Att																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176490	123176490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	27	327	0	ENST00000218089.9:c.457G>A	p.Asp153Asn	p.D153N	ENST00000218089	NM_001042749.1	153	Gat/Aat																																																																														
MSH6	2956	MSKCC	GRCh37	2	48032168	48032168	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	51	294	0	ENST00000234420.5:c.3556+2T>C		p.X1186_splice	ENST00000234420	NM_000179.2	1186																																																																															
CIC	23152	MSKCC	GRCh37	19	42799050	42799050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	70	1047	0	ENST00000575354.2:c.4534C>T	p.Arg1512Cys	p.R1512C	ENST00000575354	NM_015125.3	1512	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	236	422	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	16	248	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0040837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	60	819	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
AKT3	10000	MSKCC	GRCh37	1	243736308	243736308	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754990008		P-0040837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	137	476	0	ENST00000263826.5:c.739C>T	p.Arg247Cys	p.R247C	ENST00000263826	NM_005465.4	247	Cgc/Tgc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353866	15353866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	116	655	0	ENST00000263377.2:c.3014C>T	p.Ser1005Phe	p.S1005F	ENST00000263377	NM_058243.2	1005	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-	rs587780067		P-0040837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	175	670	0	ENST00000269305.4:c.365_366del	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895608	28895608	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	33	449	0	ENST00000282397.4:c.3166A>T	p.Lys1056Ter	p.K1056*	ENST00000282397	NM_002019.4	1056	Aaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906673	32906673	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769368098		P-0040837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	43	517	0	ENST00000380152.3:c.1058C>T	p.Ser353Leu	p.S353L	ENST00000380152		353	tCa/tTa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435447	110435447	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762592279		P-0040837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	93	522	0	ENST00000375856.3:c.2954C>T	p.Ser985Phe	p.S985F	ENST00000375856	NM_003749.2	985	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822441	72822441	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	195	1000	0	ENST00000268489.5:c.9734A>C	p.Lys3245Thr	p.K3245T	ENST00000268489	NM_006885.3	3245	aAg/aCg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627812	37627812	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	35	726	0	ENST00000447079.4:c.1727T>C	p.Val576Ala	p.V576A	ENST00000447079	NM_015083.1	576	gTt/gCt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113262	209113262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	117	416	0	ENST00000345146.2:c.245G>C	p.Arg82Thr	p.R82T	ENST00000345146	NM_005896.2	82	aGg/aCg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149437066	149437066	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0040837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	48	730	0	ENST00000286301.3:c.2221+1G>A		p.X741_splice	ENST00000286301	NM_005211.3	741																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	113	296	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	55	386	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	46	286	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	50	163	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106197505	106197506	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	45	238	0	ENST00000380013.4:c.5844dup	p.Val1949SerfsTer7	p.V1949Sfs*7	ENST00000380013	NM_001127208.2	1946	-/A																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	179	293	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249456	153249456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	50	331	0	ENST00000281708.4:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000281708	NM_033632.3	441	cGg/cAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979357	93979357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	37	240	0	ENST00000369303.4:c.1471T>C	p.Ser491Pro	p.S491P	ENST00000369303	NM_004440.3	491	Tca/Cca																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605868	46605868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745977062		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	110	478	1	ENST00000263734.3:c.1516G>A	p.Ala506Thr	p.A506T	ENST00000263734	NM_001430.4	506	Gcc/Acc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131977952	131977952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201810		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	124	281	0	ENST00000265335.6:c.3835C>T	p.Arg1279Cys	p.R1279C	ENST00000265335		1279	Cgt/Tgt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861813	57861813	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142822754		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	109	491	0	ENST00000228682.2:c.1114C>T	p.Arg372Cys	p.R372C	ENST00000228682	NM_005269.2	372	Cgc/Tgc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246653	41246653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	170	377	1	ENST00000357654.3:c.895G>A	p.Val299Ile	p.V299I	ENST00000357654	NM_007294.3	299	Gta/Ata																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665369	182665369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	29	116	0	ENST00000292782.4:c.572A>G	p.Lys191Arg	p.K191R	ENST00000292782	NM_020640.2	191	aAa/aGa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675693	30675693	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	170	554	0	ENST00000376406.3:c.2663A>G	p.Glu888Gly	p.E888G	ENST00000376406	NM_014641.2	888	gAg/gGg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222457	53222457	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782179560		P-0040868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	311	717	3	ENST00000375401.3:c.4375C>T	p.Arg1459Trp	p.R1459W	ENST00000375401	NM_004187.3	1459	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	109	442	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	199	556	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720671	89720671	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587782607		P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	38	165	0	ENST00000371953.3:c.822G>A	p.Trp274Ter	p.W274*	ENST00000371953	NM_000314.4	274	tgG/tgA																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	180	567	2	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16022738	16022738	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	114	362	0	ENST00000268712.3:c.1914del	p.Gly639ValfsTer2	p.G639Vfs*2	ENST00000268712	NM_006311.3	638	aaA/aa																																																																														
CBL	867	MSKCC	GRCh37	11	119149355	119149356	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATG	rs1358339544		P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	85	389	0	ENST00000264033.4:c.1380_1382dup	p.Asp460dup	p.D460dup	ENST00000264033	NM_005188.3	460	tat/tATGat																																																																														
RB1	5925	MSKCC	GRCh37	13	48881488	48881489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	100	228	0	ENST00000267163.4:c.219_220dup	p.Ala74GlufsTer4	p.A74Efs*4	ENST00000267163	NM_000321.2	70	-/AG																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs753855314		P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	210	661	0	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																														
ALK	238	MSKCC	GRCh37	2	29416544	29416544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	169	511	1	ENST00000389048.3:c.4409C>T	p.Ala1470Val	p.A1470V	ENST00000389048	NM_004304.4	1470	gCc/gTc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651132	206651132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	221	613	0	ENST00000367120.3:c.742G>T	p.Gly248Cys	p.G248C	ENST00000367120	NM_014002.3	248	Ggt/Tgt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	188	487	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
EP300	2033	MSKCC	GRCh37	22	41573978	41573978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	184	522	1	ENST00000263253.7:c.6263G>A	p.Arg2088Gln	p.R2088Q	ENST00000263253	NM_001429.3	2088	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944132	71944134	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs746559845		P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	54	571	0	ENST00000298229.2:c.1967_1969del	p.Ser656del	p.S656del	ENST00000298229	NM_001567.3	655	atCTCc/atc																																																																														
MET	4233	MSKCC	GRCh37	7	116414204	116414205	+	intron_variant	Intron	DEL	AA	AA	-			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	112	565	2	ENST00000397752.3:c.3029-722_3029-721del		p.*1010*	ENST00000397752	NM_000245.2																																																																																
POLE	5426	MSKCC	GRCh37	12	133201522	133201522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs190813054		P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	202	643	0	ENST00000320574.5:c.6716C>T	p.Ala2239Val	p.A2239V	ENST00000320574	NM_006231.2	2239	gCg/gTg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372287	55372288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1170462661		P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	166	582	0	ENST00000297316.4:c.983dup	p.Gly331ArgfsTer34	p.G331Rfs*34	ENST00000297316	NM_022454.3	326	cac/caCc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418183	139418183	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750539322		P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	197	618	0	ENST00000277541.6:c.389C>T	p.Pro130Leu	p.P130L	ENST00000277541	NM_017617.3	130	cCg/cTg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56179449	56179451	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	77	288	0	ENST00000399503.3:c.3767_3769del	p.Ser1256del	p.S1256del	ENST00000399503	NM_005921.1	1254	ttTTCt/ttt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94211982	94211982	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782512		P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	164	406	0	ENST00000323929.3:c.463C>T	p.Arg155Cys	p.R155C	ENST00000323929	NM_005591.3	155	Cgt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133219204	133219204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	202	582	0	ENST00000320574.5:c.4840G>A	p.Ala1614Thr	p.A1614T	ENST00000320574	NM_006231.2	1614	Gct/Act																																																																														
BLM	641	MSKCC	GRCh37	15	91293074	91293075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	42	418	0	ENST00000355112.3:c.582dup	p.Lys195Ter	p.K195*	ENST00000355112	NM_000057.2	192	-/T																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830179	72830180	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCTGGTAGAGTTGGGC			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	121	506	0	ENST00000268489.5:c.6385_6401dup	p.His2134GlnfsTer48	p.H2134Qfs*48	ENST00000268489	NM_006885.3	2134	cat/caGCCCAACTCTACCAGCAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991590	72991590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	217	652	0	ENST00000268489.5:c.2455C>A	p.Leu819Ile	p.L819I	ENST00000268489	NM_006885.3	819	Ctc/Atc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212200	36212200	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	185	576	0	ENST00000222270.7:c.1951C>T	p.Gln651Ter	p.Q651*	ENST00000222270	NM_014727.1	651	Cag/Tag																																																																														
ERF	2077	MSKCC	GRCh37	19	42753837	42753837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368169058		P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	230	714	1	ENST00000222329.4:c.427C>T	p.Arg143Cys	p.R143C	ENST00000222329	NM_006494.2	143	Cgc/Tgc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794009	42794009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	192	602	0	ENST00000575354.2:c.1370G>T	p.Gly457Val	p.G457V	ENST00000575354	NM_015125.3	457	gGc/gTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39795440	39795440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	198	558	0	ENST00000288319.7:c.280G>A	p.Val94Met	p.V94M	ENST00000288319	NM_182918.3	94	Gtg/Atg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755786	57755786	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	131	450	0	ENST00000274289.3:c.1A>G	p.Met1?	p.M1?	ENST00000274289	NM_006622.3	1	Atg/Gtg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570361	87570361	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	54	645	0	ENST00000277120.3:c.2104del	p.Glu702ArgfsTer5	p.E702Rfs*5	ENST00000277120		701	Ggg/gg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0040893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	108	219	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0040893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	13	229	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0040893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	15	171	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0040893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	19	166	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	33	249	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654643	67654643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs968244943		P-0040893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	192	258	0	ENST00000264010.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000264010	NM_006565.3	377	cGt/cAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931589		P-0040893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	11	170	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997697	149997697	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs145871963		P-0040893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	29	184	0	ENST00000253339.5:c.2770C>T	p.Arg924Ter	p.R924*	ENST00000253339		924	Cga/Tga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426808	121426808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371759652		P-0040893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	176	295	2	ENST00000257555.6:c.499G>A	p.Val167Ile	p.V167I	ENST00000257555		167	Gtc/Atc																																																																														
KIT	3815	MSKCC	GRCh37	4	55602911	55602911	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753419764		P-0040893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	113	211	1	ENST00000288135.5:c.2621C>T	p.Pro874Leu	p.P874L	ENST00000288135	NM_000222.2	874	cCg/cTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624260	89624262	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0040893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	105	120	0	ENST00000371953.3:c.36_38del	p.Asn12del	p.N12del	ENST00000371953	NM_000314.4	12	AAC/-																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591137	67591142	+	inframe_deletion	In_Frame_Del	DEL	GAGACC	GAGACC	-			P-0040893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	63	160	0	ENST00000274335.5:c.1730_1735del	p.Arg577_Gln579delinsLys	p.R577_Q579delinsK	ENST00000274335		577	aGAGACCaa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0040931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	248	836	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581157	48581157	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	104	309	0	ENST00000342988.3:c.461C>G	p.Ser154Ter	p.S154*	ENST00000342988	NM_005359.5	154	tCa/tGa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812293	212812293	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs569995088		P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	121	362	0	ENST00000342788.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000342788	NM_005235.2	95	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332619	153332619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	101	410	1	ENST00000281708.4:c.337G>A	p.Glu113Lys	p.E113K	ENST00000281708	NM_033632.3	113	Gag/Aag																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627760	14627760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	259	735	0	ENST00000254322.2:c.310G>A	p.Glu104Lys	p.E104K	ENST00000254322	NM_006145.1	104	Gag/Aag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906804	32906804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs760815829		P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	252	694	2	ENST00000380152.3:c.1189C>T	p.Gln397Ter	p.Q397*	ENST00000380152		397	Caa/Taa																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839802	27839802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	201	624	0	ENST00000328488.2:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000328488	NM_003533.2	98	Gag/Cag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220564	98220564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	137	494	0	ENST00000331920.6:c.2899G>A	p.Glu967Lys	p.E967K	ENST00000331920	NM_000264.3	967	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420241	49420241	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	281	755	0	ENST00000301067.7:c.15508C>T	p.Gln5170Ter	p.Q5170*	ENST00000301067	NM_003482.3	5170	Cag/Tag																																																																														
MPL	4352	MSKCC	GRCh37	1	43817889	43817889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	225	502	0	ENST00000372470.3:c.1568G>C	p.Arg523Thr	p.R523T	ENST00000372470	NM_005373.2	523	aGa/aCa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94170347	94170347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	125	306	0	ENST00000323929.3:c.1922C>T	p.Ser641Leu	p.S641L	ENST00000323929	NM_005591.3	641	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420640	49420640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	223	709	0	ENST00000301067.7:c.15109G>A	p.Glu5037Lys	p.E5037K	ENST00000301067	NM_003482.3	5037	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421666	49421666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	249	664	0	ENST00000301067.7:c.14563G>A	p.Asp4855Asn	p.D4855N	ENST00000301067	NM_003482.3	4855	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435743	49435752	+	frameshift_variant	Frame_Shift_Del	DEL	TTCATGATTT	TTCATGATTT	-			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	242	658	0	ENST00000301067.7:c.6131_6140del	p.Gln2044ArgfsTer47	p.Q2044Rfs*47	ENST00000301067	NM_003482.3	2044	cAAATCATGAAg/cg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422121	81422121	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	130	559	0	ENST00000298171.2:c.97C>G	p.Gln33Glu	p.Q33E	ENST00000298171	NM_000369.2	33	Cag/Gag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41276071	41276071	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	186	518	0	ENST00000357654.3:c.43A>T	p.Ile15Phe	p.I15F	ENST00000357654	NM_007294.3	15	Att/Ttt																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96931001	96931001	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	191	493	0	ENST00000258439.3:c.119C>G	p.Ser40Cys	p.S40C	ENST00000258439	NM_001193304.2	40	tCt/tGt																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114206	73114206	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	190	387	0	ENST00000356692.5:c.842C>A	p.Ser281Ter	p.S281*	ENST00000356692		281	tCa/tAa																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114701	73114701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	155	400	0	ENST00000356692.5:c.1082C>G	p.Ser361Cys	p.S361C	ENST00000356692		361	tCt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947226	178947226	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	100	187	0	ENST00000263967.3:c.2662G>C	p.Glu888Gln	p.E888Q	ENST00000263967	NM_006218.2	888	Gaa/Caa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6045603	6045603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	163	293	0	ENST00000265849.7:c.83C>G	p.Ser28Cys	p.S28C	ENST00000265849	NM_000535.5	28	tCt/tGt																																																																														
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994269	21994269	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	241	689	0				ENST00000428597																																																																																	
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994269	21994269	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	241	689	0				ENST00000428597																																																																																	
TEK	7010	MSKCC	GRCh37	9	27158124	27158124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	416	472	0	ENST00000380036.4:c.348G>T	p.Met116Ile	p.M116I	ENST00000380036	NM_000459.3	116	atG/atT																																																																														
ABL1	25	MSKCC	GRCh37	9	133760382	133760382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	198	736	0	ENST00000318560.5:c.2705C>T	p.Pro902Leu	p.P902L	ENST00000318560	NM_005157.4	902	cCa/cTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412609	139412609	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	256	670	0	ENST00000277541.6:c.1235A>T	p.Asp412Val	p.D412V	ENST00000277541	NM_017617.3	412	gAc/gTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566716	212566716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	26	273	0	ENST00000342788.4:c.1465G>T	p.Asp489Tyr	p.D489Y	ENST00000342788	NM_005235.2	489	Gac/Tac																																																																														
CIC	23152	MSKCC	GRCh37	19	42793165	42793165	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1135401823		P-0040975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	36	790	0	ENST00000575354.2:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000575354	NM_015125.3	353	Cga/Tga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187467	32187467	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1255759249		P-0040975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	51	675	3	ENST00000375023.3:c.1412G>A	p.Arg471His	p.R471H	ENST00000375023	NM_004557.3	471	cGt/cAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883969	37883969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14349	1897	673	0	ENST00000269571.5:c.3440C>A	p.Pro1147His	p.P1147H	ENST00000269571		1147	cCc/cAc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523097	25523097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	88	496	0	ENST00000264709.3:c.88G>A	p.Glu30Lys	p.E30K	ENST00000264709	NM_175629.2	30	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460572	8460572	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0040975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	15	316	0	ENST00000356435.5:c.3715-1G>C		p.X1239_splice	ENST00000356435		1239																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974830	15974830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	128	407	0	ENST00000268712.3:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000268712	NM_006311.3	1349	Cgt/Tgt																																																																														
ALK	238	MSKCC	GRCh37	2	29456486	29456486	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	113	676	0	ENST00000389048.3:c.2432T>A	p.Val811Glu	p.V811E	ENST00000389048	NM_004304.4	811	gTg/gAg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913492		P-0041054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	35	431	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519961		P-0041054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	33	292	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
RAC2	5880	MSKCC	GRCh37	22	37622790	37622790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	59	700	0	ENST00000249071.6:c.502G>A	p.Val168Met	p.V168M	ENST00000249071	NM_002872.4	168	Gtg/Atg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755445139		P-0041062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	97	726	4	ENST00000261937.6:c.89dup	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618716	37618719	+	frameshift_variant	Frame_Shift_Del	DEL	AAAA	AAAA	-			P-0041062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	107	558	0	ENST00000447079.4:c.394_397del	p.Lys132AlafsTer11	p.K132Afs*11	ENST00000447079	NM_015083.1	131	gAAAAa/ga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462214	120462214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	79	437	0	ENST00000256646.2:c.5502G>T	p.Leu1834Phe	p.L1834F	ENST00000256646	NM_024408.3	1834	ttG/ttT																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619280	37619281	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0041062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	151	473	0	ENST00000447079.4:c.957_958del	p.Tyr319Ter	p.Y319*	ENST00000447079	NM_015083.1	319	tAC/t																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	100	485	1				ENST00000310581	NM_198253.2																																																																																
PRDM1	639	MSKCC	GRCh37	6	106555057	106555057	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs940196192		P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	210	609	0	ENST00000369096.4:c.2174G>A	p.Arg725Gln	p.R725Q	ENST00000369096	NM_001198.3	725	cGa/cAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230613	46230613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	132	502	0	ENST00000334344.6:c.862C>T	p.Gln288Ter	p.Q288*	ENST00000334344	NM_152641.2	288	Cag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658412	117658412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	100	668	0	ENST00000368508.3:c.5171C>T	p.Ser1724Leu	p.S1724L	ENST00000368508	NM_002944.2	1724	tCa/tTa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148524329	148524329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	155	393	0	ENST00000320356.2:c.655C>T	p.Pro219Ser	p.P219S	ENST00000320356	NM_004456.4	219	Cct/Tct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857458	9857458	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759696882		P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	88	644	0	ENST00000330684.3:c.3943G>A	p.Asp1315Asn	p.D1315N	ENST00000330684	NM_001134407.1	1315	Gac/Aac																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156495	55156495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	74	462	0	ENST00000257290.5:c.2896C>T	p.His966Tyr	p.H966Y	ENST00000257290	NM_006206.4	966	Cac/Tac																																																																														
STAG2	10735	MSKCC	GRCh37	X	123159736	123159736	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1251136516		P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	31	414	0	ENST00000218089.9:c.91G>A	p.Glu31Lys	p.E31K	ENST00000218089	NM_001042749.1	31	Gaa/Aaa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197366	94197366	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766182900		P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	105	628	0	ENST00000323929.3:c.1138C>T	p.Arg380Cys	p.R380C	ENST00000323929	NM_005591.3	380	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319898	8319898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	97	412	0	ENST00000356435.5:c.5603G>A	p.Gly1868Glu	p.G1868E	ENST00000356435		1868	gGa/gAa																																																																														
FANCC	2176	MSKCC	GRCh37	9	98009731	98009731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	29	387	0	ENST00000289081.3:c.233C>T	p.Pro78Leu	p.P78L	ENST00000289081	NM_000136.2	78	cCt/cTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012419	29012419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867762505		P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	43	651	0	ENST00000282397.4:c.452G>A	p.Gly151Glu	p.G151E	ENST00000282397	NM_002019.4	151	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	204	676	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
MAPKAP1	79109	MSKCC	GRCh37	9	128246829	128246829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1389464216		P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	104	806	0	ENST00000265960.3:c.1100C>T	p.Ser367Leu	p.S367L	ENST00000265960	NM_001006617.1	367	tCg/tTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46298782	46298782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	74	437	0	ENST00000334344.6:c.5429C>T	p.Thr1810Ile	p.T1810I	ENST00000334344	NM_152641.2	1810	aCc/aTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29548940	29548940	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	33	425	0	ENST00000358273.4:c.1714G>T	p.Glu572Ter	p.E572*	ENST00000358273	NM_001042492.2	572	Gag/Tag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646270	3646270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780697002		P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	146	997	0	ENST00000294008.3:c.1808C>T	p.Ser603Leu	p.S603L	ENST00000294008	NM_032444.2	603	tCg/tTg																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39325151	39325152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	266	837	3	ENST00000373001.3:c.167dup	p.Ala57ArgfsTer2	p.A57Rfs*2	ENST00000373001	NM_022157.3	56	ggc/ggGc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557720	21557720	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	147	817	0	ENST00000382592.4:c.2125C>T	p.Gln709Ter	p.Q709*	ENST00000382592	NM_014572.2	709	Cag/Tag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562373	21562373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	145	789	0	ENST00000382592.4:c.1546C>T	p.Pro516Ser	p.P516S	ENST00000382592	NM_014572.2	516	Ccg/Tcg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857889	9857889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	110	705	0	ENST00000330684.3:c.3512C>T	p.Pro1171Leu	p.P1171L	ENST00000330684	NM_001134407.1	1171	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273870	10273870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	188	873	0	ENST00000330684.3:c.399G>A	p.Met133Ile	p.M133I	ENST00000330684	NM_001134407.1	133	atG/atA																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81925108	81925108	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764885126		P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	187	592	0	ENST00000359376.3:c.899G>A	p.Ser300Asn	p.S300N	ENST00000359376	NM_002661.3	300	aGc/aAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222900	5222900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747443047		P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	152	727	0	ENST00000357368.4:c.2903C>T	p.Ala968Val	p.A968V	ENST00000357368	NM_002850.3	968	gCc/gTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367899	15367899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	140	1010	0	ENST00000263377.2:c.1427C>T	p.Pro476Leu	p.P476L	ENST00000263377	NM_058243.2	476	cCc/cTc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46588162	46588162	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1202845001		P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	102	831	0	ENST00000263734.3:c.712C>T	p.Pro238Ser	p.P238S	ENST00000263734	NM_001430.4	238	Ccc/Tcc																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62324279	62324279	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs770018942		P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	337	1052	1	ENST00000482936.1:c.2774C>T	p.Ser925Phe	p.S925F	ENST00000482936		925	tCc/tTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806210	1806210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	154	964	0	ENST00000260795.2:c.1229C>T	p.Thr410Ile	p.T410I	ENST00000260795		410	aCc/aTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139721	55139721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	78	537	0	ENST00000257290.5:c.1382C>T	p.Ser461Phe	p.S461F	ENST00000257290	NM_006206.4	461	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55946149	55946149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	72	409	0	ENST00000263923.4:c.4030C>T	p.Gln1344Ter	p.Q1344*	ENST00000263923	NM_002253.2	1344	Cag/Tag																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271241	38271241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	143	1028	0	ENST00000425967.3:c.2467G>A	p.Glu823Lys	p.E823K	ENST00000425967	NM_001174067.1	823	Gag/Aag																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564657	139564657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	208	1131	0	ENST00000308874.7:c.446C>T	p.Pro149Leu	p.P149L	ENST00000308874		149	cCc/cTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519961		P-0041122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	17	304	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913471		P-0041122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	50	789	0	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609813	81609813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs925961475		P-0041122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	37	360	1	ENST00000298171.2:c.1411G>A	p.Ala471Thr	p.A471T	ENST00000298171	NM_000369.2	471	Gcc/Acc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643808	38643808	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	79	679	0	ENST00000299084.4:c.1278C>A	p.Cys426Ter	p.C426*	ENST00000299084	NM_152594.2	426	tgC/tgA																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9781878	9781878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	230	1102	1	ENST00000377346.4:c.2015G>A	p.Cys672Tyr	p.C672Y	ENST00000377346	NM_005026.3	672	tGc/tAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	26	102	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	211	813	0	ENST00000324856.7:c.1650del	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941090	36941090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	208	899	0	ENST00000361632.4:c.249G>T	p.Gln83His	p.Q83H	ENST00000361632		83	caG/caT																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78433329	78433329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs537242451		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	148	479	2	ENST00000370768.2:c.272C>T	p.Pro91Leu	p.P91L	ENST00000370768	NM_003902.3	91	cCg/cTg																																																																														
NUF2	83540	MSKCC	GRCh37	1	163315481	163315481	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	84	445	0	ENST00000271452.3:c.821A>C	p.Glu274Ala	p.E274A	ENST00000271452	NM_145697.2	274	gAg/gCg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	250	990	4	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																														
RET	5979	MSKCC	GRCh37	10	43604533	43604533	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs546866208		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	263	969	1	ENST00000355710.3:c.1118C>T	p.Ala373Val	p.A373V	ENST00000355710	NM_020975.4	373	gCg/gTg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63661491	63661491	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	111	385	0	ENST00000279873.7:c.21+2T>C		p.X7_splice	ENST00000279873	NM_032199.2	7																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	74	423	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683144	88683144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	128	599	0	ENST00000372037.3:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000372037	NM_004329.2	452	Gaa/Aaa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683253	88683253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	152	844	0	ENST00000372037.3:c.1463A>G	p.Asn488Ser	p.N488S	ENST00000372037	NM_004329.2	488	aAc/aGc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114799886	114799886	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs377242639		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	209	680	0	ENST00000543371.1:c.552+1G>A		p.X184_splice	ENST00000543371	NM_001198531.1	184																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	326	582	11	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
LMO1	4004	MSKCC	GRCh37	11	8284885	8284885	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	115	648	3	ENST00000335790.3:c.25G>A	p.Gly9Ser	p.G9S	ENST00000335790	NM_002315.2	9	Ggc/Agc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	244	906	1	ENST00000312629.5:c.870del	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944515	71944515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878853123		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	209	902	1	ENST00000298229.2:c.2071C>T	p.Arg691Trp	p.R691W	ENST00000298229	NM_001567.3	691	Cgg/Tgg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115385	115115386	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	177	637	0	ENST00000257566.3:c.940dup	p.Arg314LysfsTer13	p.R314Kfs*13	ENST00000257566	NM_016569.3	314	aga/aAga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	241	1003	11	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73334684	73334684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	84	334	0	ENST00000377767.4:c.2776T>C	p.Ser926Pro	p.S926P	ENST00000377767	NM_014953.3	926	Tcc/Ccc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73355942	73355942	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	257	958	1	ENST00000377767.4:c.29del	p.Lys10ArgfsTer7	p.K10Rfs*7	ENST00000377767	NM_014953.3	10	aAg/ag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518645	103518645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	106	386	0	ENST00000355739.4:c.2233G>A	p.Ala745Thr	p.A745T	ENST00000355739	NM_000123.3	745	Gca/Aca																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609957	81609957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756016910		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	111	439	0	ENST00000298171.2:c.1555C>T	p.Arg519Cys	p.R519C	ENST00000298171	NM_000369.2	519	Cgc/Tgc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	114	523	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961400	41961400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	150	564	0	ENST00000219905.7:c.308G>A	p.Arg103His	p.R103H	ENST00000219905	NM_001164273.1	103	cGc/cAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42019477	42019477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	176	699	0	ENST00000219905.7:c.3530C>A	p.Pro1177His	p.P1177H	ENST00000219905	NM_001164273.1	1177	cCt/cAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42028735	42028735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	161	685	0	ENST00000219905.7:c.4276del	p.Met1426TrpfsTer15	p.M1426Wfs*15	ENST00000219905	NM_001164273.1	1425	Aaa/aa																																																																														
CD276	80381	MSKCC	GRCh37	15	73996790	73996790	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775147523		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	128	467	0	ENST00000318443.5:c.1346C>T	p.Ala449Val	p.A449V	ENST00000318443	NM_001024736.1	449	gCg/gTg																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	118	627	10	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347924	347924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756071423		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	328	1309	0	ENST00000262320.3:c.1582G>A	p.Gly528Ser	p.G528S	ENST00000262320	NM_003502.3	528	Ggc/Agc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519884		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	188	526	1	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	176	628	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822585	72822586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs764626362		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	45	689	0	ENST00000268489.5:c.9589dup	p.Gln3197ProfsTer42	p.Q3197Pfs*42	ENST00000268489	NM_006885.3	3197	cag/cCag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357101	89357101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	283	910	1	ENST00000301030.4:c.533G>A	p.Arg178His	p.R178H	ENST00000301030	NM_001256183.1	178	cGc/cAc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877120	89877120	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	155	449	0	ENST00000389301.3:c.517del	p.Ile173TyrfsTer19	p.I173Yfs*19	ENST00000389301	NM_000135.2	173	Ata/ta																																																																														
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	252	1013	1	ENST00000269305.4:c.337T>C	p.Phe113Leu	p.F113L	ENST00000269305	NM_001126112.2	113	Ttc/Ctc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7983099	7983099	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	166	724	0	ENST00000319144.4:c.915A>C	p.Gln305His	p.Q305H	ENST00000319144	NM_001139.2	305	caA/caC																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	157	783	10	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428014	33428014	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	209	806	1	ENST00000335858.7:c.609del	p.Thr204ProfsTer35	p.T204Pfs*35	ENST00000335858	NM_133629.2	203	ggG/gg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	212	969	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	224	772	2	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246532	41246532	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357618		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	171	801	2	ENST00000357654.3:c.1016del	p.Lys339ArgfsTer2	p.K339Rfs*2	ENST00000357654	NM_007294.3	339	aAg/ag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	230	938	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581306	48581306	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	169	581	0	ENST00000342988.3:c.610T>C	p.Ser204Pro	p.S204P	ENST00000342988	NM_005359.5	204	Tct/Cct																																																																														
MALT1	10892	MSKCC	GRCh37	18	56401588	56401588	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367866327		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	105	447	1	ENST00000348428.3:c.1450G>A	p.Ala484Thr	p.A484T	ENST00000348428	NM_006785.3	484	Gcc/Acc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2213955	2213955	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	267	1017	0	ENST00000398665.3:c.1767C>G	p.Asn589Lys	p.N589K	ENST00000398665	NM_032482.2	589	aaC/aaG																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222490	2222490	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs995952663		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	291	895	1	ENST00000398665.3:c.3322C>T	p.Arg1108Ter	p.R1108*	ENST00000398665	NM_032482.2	1108	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5211698	5211698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	246	941	0	ENST00000357368.4:c.5137A>G	p.Asn1713Asp	p.N1713D	ENST00000357368	NM_002850.3	1713	Aac/Gac																																																																														
CARM1	10498	MSKCC	GRCh37	19	11018786	11018786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762459878		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	364	1187	3	ENST00000327064.4:c.418C>T	p.Arg140Trp	p.R140W	ENST00000327064	NM_199141.1	140	Cgg/Tgg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367954	15367954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	232	1055	2	ENST00000263377.2:c.1372C>T	p.Pro458Ser	p.P458S	ENST00000263377	NM_058243.2	458	Ccg/Tcg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18277075	18277075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	216	682	0	ENST00000222254.8:c.1522C>A	p.Arg508Ser	p.R508S	ENST00000222254	NM_005027.3	508	Cgc/Agc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256769	19256769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	172	704	5	ENST00000162023.5:c.944del	p.Pro315GlnfsTer?	p.P315Qfs*?	ENST00000162023		315	cCa/ca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	291	1247	7	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221276	36221276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	285	954	1	ENST00000222270.7:c.5110C>T	p.Arg1704Cys	p.R1704C	ENST00000222270	NM_014727.1	1704	Cgc/Tgc																																																																														
AXL	558	MSKCC	GRCh37	19	41727880	41727880	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756018335		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	301	1157	2	ENST00000301178.4:c.505G>A	p.Val169Met	p.V169M	ENST00000301178	NM_021913.4	169	Gtg/Atg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	301	607	8	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
CIC	23152	MSKCC	GRCh37	19	42795609	42795609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	466	1067	7	ENST00000575354.2:c.2694del	p.Ala900ProfsTer24	p.A900Pfs*24	ENST00000575354	NM_015125.3	897	Ccc/cc																																																																														
CIC	23152	MSKCC	GRCh37	19	42796957	42796957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	642	1141	0	ENST00000575354.2:c.3415C>T	p.Pro1139Ser	p.P1139S	ENST00000575354	NM_015125.3	1139	Cca/Tca																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	198	807	1	ENST00000440232.2:c.342del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910391	50910391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201038430		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	592	1059	1	ENST00000440232.2:c.1646G>A	p.Arg549His	p.R549H	ENST00000440232	NM_002691.3	549	cGt/cAt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	316	1261	7	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
ALK	238	MSKCC	GRCh37	2	29456453	29456453	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	233	877	2	ENST00000389048.3:c.2465del	p.Gly822ValfsTer9	p.G822Vfs*9	ENST00000389048	NM_004304.4	822	gGt/gt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028231	48028231	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	136	430	0	ENST00000234420.5:c.3109T>A	p.Phe1037Ile	p.F1037I	ENST00000234420	NM_000179.2	1037	Ttc/Atc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128050347	128050347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1479291031		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	110	671	1	ENST00000285398.2:c.310G>A	p.Ala104Thr	p.A104T	ENST00000285398	NM_000122.1	104	Gca/Aca																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719755	190719755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750449314		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	63	298	0	ENST00000441310.2:c.1757G>A	p.Arg586His	p.R586H	ENST00000441310	NM_000534.4	586	cGt/cAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944554	40944554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	173	634	0	ENST00000373198.4:c.1948del	p.Val650Ter	p.V650*	ENST00000373198	NM_133170.3	650	Gtg/tg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419957	41419957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369230837		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	220	767	1	ENST00000373198.4:c.364G>A	p.Val122Ile	p.V122I	ENST00000373198	NM_133170.3	122	Gtc/Atc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	126	456	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
MLH1	4292	MSKCC	GRCh37	3	37045935	37045935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63750781		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	142	512	0	ENST00000231790.2:c.350C>T	p.Thr117Met	p.T117M	ENST00000231790	NM_000249.3	117	aCg/aTg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067433	37067433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	175	698	1	ENST00000231790.2:c.1348del	p.Asp450IlefsTer41	p.D450Ifs*41	ENST00000231790	NM_000249.3	448	gaG/ga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437768	52437768	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs150029305		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	199	898	0	ENST00000460680.1:c.1393A>G	p.Ile465Val	p.I465V	ENST00000460680	NM_004656.3	465	Atc/Gtc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468381	89468381	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754102338		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	102	256	1	ENST00000336596.2:c.1915C>T	p.Arg639Cys	p.R639C	ENST00000336596	NM_005233.5	639	Cgc/Tgc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169953087	169953087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	158	597	0	ENST00000295797.4:c.171G>A	p.Met57Ile	p.M57I	ENST00000295797	NM_002740.5	57	atG/atA																																																																														
KDR	3791	MSKCC	GRCh37	4	55984966	55984966	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	106	466	0	ENST00000263923.4:c.163G>A	p.Gly55Arg	p.G55R	ENST00000263923	NM_002253.2	55	Gga/Aga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535280	66535280	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs527913976		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	239	791	1	ENST00000273854.3:c.181G>A	p.Val61Met	p.V61M	ENST00000273854	NM_004439.5	61	Gtg/Atg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	184	596	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539266	187539266	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	92	459	0	ENST00000441802.2:c.8474del	p.Gly2825GlufsTer4	p.G2825Efs*4	ENST00000441802	NM_005245.3	2825	gGa/ga																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751906	57751906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	180	543	1	ENST00000274289.3:c.1331C>T	p.Ala444Val	p.A444V	ENST00000274289	NM_006622.3	444	gCt/gTt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	282	688	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112151262	112151262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764841552		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	143	480	0	ENST00000257430.4:c.905G>A	p.Arg302Gln	p.R302Q	ENST00000257430	NM_000038.5	302	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112164604	112164604	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	115	340	0	ENST00000257430.4:c.1682del	p.Lys561ArgfsTer9	p.K561Rfs*9	ENST00000257430	NM_000038.5	560	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	116	412	1	ENST00000257430.4:c.4364del	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515273	149515273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	252	896	0	ENST00000261799.4:c.209del	p.Pro70HisfsTer18	p.P70Hfs*18	ENST00000261799	NM_002609.3	70	cCa/ca																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720865	176720865	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	195	641	0	ENST00000439151.2:c.6496A>G	p.Ile2166Val	p.I2166V	ENST00000439151	NM_022455.4	2166	Atc/Gtc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755445139		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	223	963	1	ENST00000261937.6:c.89dup	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324006	31324006	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41543920		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	33	133	0	ENST00000412585.2:c.557G>A	p.Gly186Asp	p.G186D	ENST00000412585	NM_005514.6	186	gGc/gAc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800512	32800512	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	297	1225	0	ENST00000374899.4:c.1035del	p.Phe345LeufsTer35	p.F345Lfs*35	ENST00000374899	NM_018833.2	345	ttT/tt																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	227	1159	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
LATS1	9113	MSKCC	GRCh37	6	149982926	149982926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777519756		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	111	484	0	ENST00000253339.5:c.3332C>T	p.Ser1111Leu	p.S1111L	ENST00000253339		1111	tCg/tTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157525077	157525077	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1484341574		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	110	362	0	ENST00000346085.5:c.4972A>G	p.Ile1658Val	p.I1658V	ENST00000346085	NM_020732.3	1658	Att/Gtt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	467	1010	9	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2974121	2974121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760308478		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	106	643	0	ENST00000396946.4:c.1484C>T	p.Pro495Leu	p.P495L	ENST00000396946	NM_032415.4	495	cCg/cTg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6045646	6045646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	37	108	0	ENST00000265849.7:c.40G>A	p.Ala14Thr	p.A14T	ENST00000265849	NM_000535.5	14	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	181	826	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	300	489	17	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5073768	5073768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	133	470	0	ENST00000381652.3:c.1847G>A	p.Cys616Tyr	p.C616Y	ENST00000381652	NM_004972.3	616	tGt/tAt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209465	98209465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	238	945	1	ENST00000331920.6:c.4073G>A	p.Gly1358Asp	p.G1358D	ENST00000331920	NM_000264.3	1358	gGc/gAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797261	135797261	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	84	325	0	ENST00000298552.3:c.608del	p.Leu203CysfsTer7	p.L203Cfs*7	ENST00000298552	NM_001162426.1	203	tTg/tg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390805	139390805	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	148	1156	0	ENST00000277541.6:c.7386del	p.Ala2463ProfsTer14	p.A2463Pfs*14	ENST00000277541	NM_017617.3	2462	ccC/cc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139811026	139811026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	249	986	1	ENST00000247668.2:c.637C>T	p.Arg213Ter	p.R213*	ENST00000247668	NM_021138.3	213	Cga/Tga																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139820312	139820312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	226	915	0	ENST00000247668.2:c.1465G>A	p.Ala489Thr	p.A489T	ENST00000247668	NM_021138.3	489	Gcc/Acc																																																																														
AR	367	MSKCC	GRCh37	X	66765142	66765142	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747293337		P-0041144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	147	310	0	ENST00000374690.3:c.154G>A	p.Ala52Thr	p.A52T	ENST00000374690	NM_000044.3	52	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	67	407	0				ENST00000310581	NM_198253.2																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	25	396	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180653	32180653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	119	696	0	ENST00000375023.3:c.2474C>T	p.Pro825Leu	p.P825L	ENST00000375023	NM_004557.3	825	cCt/cTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9560902	9560902	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756198440		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	46	573	0	ENST00000353224.5:c.880G>A	p.Glu294Lys	p.E294K	ENST00000353224	NM_177990.2	294	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549725	187549725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199516712		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	29	455	2	ENST00000441802.2:c.4516C>T	p.Arg1506Cys	p.R1506C	ENST00000441802	NM_005245.3	1506	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517724	187517724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	14	235	0	ENST00000441802.2:c.12970C>T	p.Gln4324Ter	p.Q4324*	ENST00000441802	NM_005245.3	4324	Cag/Tag																																																																														
BCL6	604	MSKCC	GRCh37	3	187442854	187442854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867576130		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	28	418	0	ENST00000232014.4:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000232014	NM_001130845.1	618	Cgt/Tgt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681434	88681434	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782496		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	52	641	0	ENST00000372037.3:c.1324C>T	p.Arg442Cys	p.R442C	ENST00000372037	NM_004329.2	442	Cgt/Tgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164832	47164832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1017636782		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	57	311	0	ENST00000409792.3:c.1294C>T	p.Arg432Cys	p.R432C	ENST00000409792	NM_014159.6	432	Cgt/Tgt																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	51	376	0	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089494	27089494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	52	727	0	ENST00000324856.7:c.2450C>T	p.Ala817Val	p.A817V	ENST00000324856	NM_006015.4	817	gCc/gTc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201807	102201807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	79	411	0	ENST00000263464.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000263464	NM_001165.4	387	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578479	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	71	917	3	ENST00000269305.4:c.451_452delinsTT	p.Pro151Phe	p.P151F	ENST00000269305	NM_001126112.2	151	CCc/TTc																																																																														
ALK	238	MSKCC	GRCh37	2	29462683	29462683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766541301		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	75	710	0	ENST00000389048.3:c.2218G>A	p.Gly740Arg	p.G740R	ENST00000389048	NM_004304.4	740	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577527	7577527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	110	688	0	ENST00000269305.4:c.754C>T	p.Leu252Phe	p.L252F	ENST00000269305	NM_001126112.2	252	Ctc/Ttc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740479	58740479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	56	547	0	ENST00000305921.3:c.1384C>T	p.Gln462Ter	p.Q462*	ENST00000305921	NM_003620.3	462	Caa/Taa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781428	135781428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	58	557	1	ENST00000298552.3:c.1537C>T	p.Pro513Ser	p.P513S	ENST00000298552	NM_001162426.1	513	Cca/Tca																																																																														
ATM	472	MSKCC	GRCh37	11	108235849	108235849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	63	403	0	ENST00000278616.4:c.8891C>T	p.Pro2964Leu	p.P2964L	ENST00000278616	NM_000051.3	2964	cCt/cTt																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874140	155874140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	205	629	1	ENST00000368323.3:c.391C>T	p.Leu131Phe	p.L131F	ENST00000368323	NM_006912.5	131	Ctt/Ttt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257832	198257832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	35	494	0	ENST00000335508.6:c.3620C>T	p.Ser1207Leu	p.S1207L	ENST00000335508	NM_012433.2	1207	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845580	151845580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1287135873		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	93	697	1	ENST00000262189.6:c.13432C>T	p.Arg4478Ter	p.R4478*	ENST00000262189	NM_170606.2	4478	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858006	9858006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	35	606	0	ENST00000330684.3:c.3395C>T	p.Pro1132Leu	p.P1132L	ENST00000330684	NM_001134407.1	1132	cCa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578476	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	131	929	1	ENST00000269305.4:c.454_455delinsTT	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	CCg/TTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445316	49445316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	84	956	0	ENST00000301067.7:c.2150C>T	p.Ser717Phe	p.S717F	ENST00000301067	NM_003482.3	717	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211700	36211700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	58	679	1	ENST00000222270.7:c.1451C>T	p.Ala484Val	p.A484V	ENST00000222270	NM_014727.1	484	gCt/gTt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25462077	25462077	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752626029		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	41	536	1	ENST00000264709.3:c.2330C>T	p.Pro777Leu	p.P777L	ENST00000264709	NM_175629.2	777	cCt/cTt																																																																														
CDH1	999	MSKCC	GRCh37	16	68867383	68867383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	38	434	0	ENST00000261769.5:c.2630G>A	p.Gly877Glu	p.G877E	ENST00000261769	NM_004360.3	877	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708103	117708103	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	27	521	0	ENST00000368508.3:c.2074A>C	p.Asn692His	p.N692H	ENST00000368508	NM_002944.2	692	Aat/Cat																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46277748	46277748	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	103	322	0	ENST00000371998.3:c.3547-1G>A		p.X1183_splice	ENST00000371998		1183																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856028	151856028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144222590		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	48	496	0	ENST00000262189.6:c.11590C>T	p.Arg3864Cys	p.R3864C	ENST00000262189	NM_170606.2	3864	Cgc/Tgc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478828	56478828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	75	824	1	ENST00000267101.3:c.284C>T	p.Ser95Phe	p.S95F	ENST00000267101	NM_001982.3	95	tCt/tTt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983076	201983076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1293525214		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	55	813	1	ENST00000359651.3:c.925G>A	p.Glu309Lys	p.E309K	ENST00000359651		309	Gag/Aag																																																																														
SESN3	143686	MSKCC	GRCh37	11	94922971	94922971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	37	409	0	ENST00000536441.1:c.497C>T	p.Pro166Leu	p.P166L	ENST00000536441	NM_144665.3	166	cCt/cTt																																																																														
PGR	5241	MSKCC	GRCh37	11	100909956	100909956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	44	421	0	ENST00000325455.5:c.2693C>T	p.Ser898Phe	p.S898F	ENST00000325455	NM_001202474.3	898	tCc/tTc																																																																														
ATM	472	MSKCC	GRCh37	11	108122745	108122745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	23	351	0	ENST00000278616.4:c.1789C>T	p.Pro597Ser	p.P597S	ENST00000278616	NM_000051.3	597	Cca/Tca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118347623	118347623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	104	587	0	ENST00000534358.1:c.3260C>T	p.Pro1087Leu	p.P1087L	ENST00000534358	NM_005933.3	1087	cCt/cTt																																																																														
CBL	867	MSKCC	GRCh37	11	119145624	119145624	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	42	420	0	ENST00000264033.4:c.830T>G	p.Val277Gly	p.V277G	ENST00000264033	NM_005188.3	277	gTg/gGg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	475168	475168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	52	608	1	ENST00000399788.2:c.469C>T	p.Leu157Phe	p.L157F	ENST00000399788	NM_001042603.1	157	Ctt/Ttt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245520	46245520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	30	395	0	ENST00000334344.6:c.3614G>A	p.Gly1205Glu	p.G1205E	ENST00000334344	NM_152641.2	1205	gGa/gAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433095	49433095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	76	808	0	ENST00000301067.7:c.8276C>T	p.Pro2759Leu	p.P2759L	ENST00000301067	NM_003482.3	2759	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445955	49445955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	66	906	0	ENST00000301067.7:c.1511C>T	p.Ser504Phe	p.S504F	ENST00000301067	NM_003482.3	504	tCt/tTt																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811738	102811738	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1490271682		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	44	704	0	ENST00000307046.8:c.446G>A	p.Arg149Lys	p.R149K	ENST00000307046	NM_001111285.1	149	aGg/aAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590964	95590965	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	34	254	1	ENST00000343455.3:c.944_945delinsTT	p.Pro315Leu	p.P315L	ENST00000343455	NM_177438.2	315	cCC/cTT																																																																														
CD276	80381	MSKCC	GRCh37	15	73996008	73996008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	117	789	0	ENST00000318443.5:c.742G>A	p.Glu248Lys	p.E248K	ENST00000318443	NM_001024736.1	248	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690600	88690600	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	37	462	0	ENST00000360948.2:c.430T>G	p.Trp144Gly	p.W144G	ENST00000360948	NM_001012338.2	144	Tgg/Ggg																																																																														
BLM	641	MSKCC	GRCh37	15	91292923	91292923	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	50	535	0	ENST00000355112.3:c.425G>C	p.Ser142Thr	p.S142T	ENST00000355112	NM_000057.2	142	aGt/aCt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136841	2136842	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	42	748	1	ENST00000219476.3:c.4958_4959delinsTT	p.Ser1653Phe	p.S1653F	ENST00000219476	NM_000548.3	1653	tCC/tTT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923284	9923284	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	36	501	0	ENST00000330684.3:c.2003A>G	p.Lys668Arg	p.K668R	ENST00000330684	NM_001134407.1	668	aAa/aGa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50830331	50830331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	35	503	0	ENST00000398568.2:c.2774C>T	p.Ser925Phe	p.S925F	ENST00000398568	NM_001042412.1	925	tCc/tTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81957140	81957140	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	40	622	0	ENST00000359376.3:c.2358T>G	p.Asp786Glu	p.D786E	ENST00000359376	NM_002661.3	786	gaT/gaG																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965170	81965171	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	54	684	1	ENST00000359376.3:c.2650_2651delinsTT	p.Pro884Phe	p.P884F	ENST00000359376	NM_002661.3	884	CCt/TTt																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108345	8108346	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	42	654	1	ENST00000585124.1:c.878_879delinsTT	p.Pro293Leu	p.P293L	ENST00000585124	NM_004217.3	293	cCC/cTT																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191155	2191156	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	127	824	1	ENST00000398665.3:c.409_410delinsAA	p.Gly137Lys	p.G137K	ENST00000398665	NM_032482.2	137	GGg/AAg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207670	2207671	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	94	684	0	ENST00000398665.3:c.954_955delinsTT	p.Arg319Cys	p.R319C	ENST00000398665	NM_032482.2	318	gaCCgc/gaTTgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222732	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	60	714	1	ENST00000357368.4:c.3071_3072delinsTT	p.Pro1024Leu	p.P1024L	ENST00000357368	NM_002850.3	1024	cCC/cTT																																																																														
INSR	3643	MSKCC	GRCh37	19	7122666	7122666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	60	695	1	ENST00000302850.5:c.3488G>A	p.Arg1163Lys	p.R1163K	ENST00000302850	NM_000208.2	1163	aGa/aAa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252833	10252833	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	68	754	0	ENST00000340748.4:c.3132G>A	p.Trp1044Ter	p.W1044*	ENST00000340748		1044	tgG/tgA																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295259	15295260	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	123	821	0	ENST00000263388.2:c.2412_2413delinsTT	p.Pro805Ser	p.P805S	ENST00000263388	NM_000435.2	804	ggCCca/ggTTca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298793	15298793	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778571943		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	66	844	0	ENST00000263388.2:c.1505C>T	p.Ser502Phe	p.S502F	ENST00000263388	NM_000435.2	502	tCc/tTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355231	15355231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	66	748	0	ENST00000263377.2:c.2392C>T	p.Pro798Ser	p.P798S	ENST00000263377	NM_058243.2	798	Cca/Tca																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976518	18976519	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	133	870	1	ENST00000262803.5:c.3168_3169delinsAA	p.Gly1057Ser	p.G1057S	ENST00000262803	NM_002911.3	1056	caGGgc/caAAgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36209089	36209089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	11	83	0	ENST00000222270.7:c.169G>A	p.Gly57Ser	p.G57S	ENST00000222270	NM_014727.1	57	Ggc/Agc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902162	50902163	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	105	733	0	ENST00000440232.2:c.54_55delinsTT	p.Arg19Cys	p.R19C	ENST00000440232	NM_002691.3	18	gcCCgt/gcTTgt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52725449	52725449	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	68	675	0	ENST00000322088.6:c.1616A>T	p.Asn539Ile	p.N539I	ENST00000322088	NM_014225.5	539	aAt/aTt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467169	25467170	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	46	616	0	ENST00000264709.3:c.1705_1706delinsTT	p.Pro569Leu	p.P569L	ENST00000264709	NM_175629.2	569	CCg/TTg																																																																														
REL	5966	MSKCC	GRCh37	2	61149158	61149158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	70	405	0	ENST00000295025.8:c.1348C>T	p.Pro450Ser	p.P450S	ENST00000295025	NM_002908.2	450	Cct/Tct																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046310	128046310	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1423048236		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	130	532	0	ENST00000285398.2:c.953C>T	p.Pro318Leu	p.P318L	ENST00000285398	NM_000122.1	318	cCc/cTc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209104650	209104650	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773327968		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	110	586	1	ENST00000345146.2:c.928G>A	p.Gly310Arg	p.G310R	ENST00000345146	NM_005896.2	310	Ggg/Agg																																																																														
BARD1	580	MSKCC	GRCh37	2	215633976	215633976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	31	391	0	ENST00000260947.4:c.1375C>T	p.His459Tyr	p.H459Y	ENST00000260947	NM_000465.2	459	Cat/Tat																																																																														
BARD1	580	MSKCC	GRCh37	2	215674192	215674192	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879254280		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	69	721	0	ENST00000260947.4:c.102G>A	p.Trp34Ter	p.W34*	ENST00000260947	NM_000465.2	34	tgG/tgA																																																																														
INHA	3623	MSKCC	GRCh37	2	220437311	220437311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	66	917	0	ENST00000243786.2:c.215C>T	p.Ser72Phe	p.S72F	ENST00000243786	NM_002191.3	72	tCt/tTt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024152	31024152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	104	686	0	ENST00000375687.4:c.3637C>T	p.Leu1213Phe	p.L1213F	ENST00000375687	NM_015338.5	1213	Ctc/Ttc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070361	37070361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	35	422	2	ENST00000231790.2:c.1496G>A	p.Arg499Lys	p.R499K	ENST00000231790	NM_000249.3	499	aGg/aAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103707	47103707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	36	479	0	ENST00000409792.3:c.6239C>T	p.Ser2080Phe	p.S2080F	ENST00000409792	NM_014159.6	2080	tCc/tTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259472	89259472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	42	539	1	ENST00000336596.2:c.616G>A	p.Val206Met	p.V206M	ENST00000336596	NM_005233.5	206	Gtg/Atg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390143	89390143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	96	361	0	ENST00000336596.2:c.892G>A	p.Glu298Lys	p.E298K	ENST00000336596	NM_005233.5	298	Gaa/Aaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189607162	189607162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	49	706	0	ENST00000264731.3:c.1541G>A	p.Gly514Glu	p.G514E	ENST00000264731	NM_003722.4	514	gGa/gAa																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749481	41749481	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	53	558	0	ENST00000226382.2:c.314T>A	p.Phe105Tyr	p.F105Y	ENST00000226382	NM_003924.3	105	tTc/tAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189876	66189876	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	55	475	0	ENST00000273854.3:c.3070C>T	p.Gln1024Ter	p.Q1024*	ENST00000273854	NM_004439.5	1024	Caa/Taa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79968172	79968172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	69	492	1	ENST00000265081.6:c.902G>A	p.Gly301Glu	p.G301E	ENST00000265081	NM_002439.4	301	gGa/gAa																																																																														
NPM1	4869	MSKCC	GRCh37	5	170819759	170819759	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	24	222	0	ENST00000296930.5:c.398T>G	p.Val133Gly	p.V133G	ENST00000296930	NM_002520.6	133	gTg/gGg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673437	30673437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	83	571	1	ENST00000376406.3:c.3523G>A	p.Asp1175Asn	p.D1175N	ENST00000376406	NM_014641.2	1175	Gac/Aac																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324929	31324929	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750982109		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	58	898	1	ENST00000412585.2:c.7G>A	p.Val3Ile	p.V3I	ENST00000412585	NM_005514.6	3	Gtc/Atc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166749	32166749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	63	874	0	ENST00000375023.3:c.4489C>T	p.Pro1497Ser	p.P1497S	ENST00000375023	NM_004557.3	1497	Ccc/Tcc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181617	32181617	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	68	767	0	ENST00000375023.3:c.2168G>A	p.Gly723Glu	p.G723E	ENST00000375023	NM_004557.3	723	gGa/gAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187905	32187905	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	48	724	1	ENST00000375023.3:c.1315+1G>A		p.X439_splice	ENST00000375023	NM_004557.3	439																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93969186	93969186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	28	363	0	ENST00000369303.4:c.1810G>A	p.Gly604Ser	p.G604S	ENST00000369303	NM_004440.3	604	Ggc/Agc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553656	106553656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	41	461	0	ENST00000369096.4:c.1621C>T	p.Pro541Ser	p.P541S	ENST00000369096	NM_001198.3	541	Ccc/Tcc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528909	157528909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371461578		P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	98	650	0	ENST00000346085.5:c.6634C>T	p.Arg2212Cys	p.R2212C	ENST00000346085	NM_020732.3	2212	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55231515	55231516	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	77	512	1	ENST00000275493.2:c.1721_1722delinsAA	p.Arg574Gln	p.R574Q	ENST00000275493	NM_005228.3	574	cGG/cAA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55260518	55260518	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	59	535	0	ENST00000275493.2:c.2685T>G	p.Ser895Arg	p.S895R	ENST00000275493	NM_005228.3	895	agT/agG																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508200	106508200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	79	416	0	ENST00000359195.3:c.194G>A	p.Gly65Asp	p.G65D	ENST00000359195	NM_002649.2	65	gGc/gAc																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540147	23540148	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	47	304	1	ENST00000380871.4:c.255_256delinsAA	p.Glu86Lys	p.E86K	ENST00000380871	NM_006167.3	85	gaGGag/gaAAag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864750	68864750	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	43	604	0	ENST00000288368.4:c.121A>C	p.Thr41Pro	p.T41P	ENST00000288368	NM_024870.2	41	Acg/Ccg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971100	21971101	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	156	515	1	ENST00000304494.5:c.257_258delinsAT	p.Ala86Asp	p.A86D	ENST00000304494	NM_000077.4	86	gCC/gAT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971100	21971101	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	156	515	1	ENST00000304494.5:c.257_258delinsAT	p.Ala86Asp	p.A86D	ENST00000304494	NM_000077.4	86	gCC/gAT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971100	21971101	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	156	515	1	ENST00000304494.5:c.257_258delinsAT	p.Ala86Asp	p.A86D	ENST00000304494	NM_000077.4	86	gCC/gAT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911602	39911603	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	47	310	1	ENST00000378444.4:c.5027_5028delinsTT	p.Ser1676Phe	p.S1676F	ENST00000378444	NM_001123385.1	1676	tCC/tTT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200043	123200043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	13	152	0	ENST00000218089.9:c.2115G>C	p.Lys705Asn	p.K705N	ENST00000218089	NM_001042749.1	705	aaG/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730882005		P-0041176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	312	601	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416797	121416797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1320041799		P-0041176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	119	1053	1	ENST00000257555.6:c.226G>A	p.Asp76Asn	p.D76N	ENST00000257555		76	Gac/Aac																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435570	110435570	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	53	646	0	ENST00000375856.3:c.2831C>G	p.Ser944Trp	p.S944W	ENST00000375856	NM_003749.2	944	tCg/tGg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913474		P-0041178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	121	565	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	54	405	1	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																																																														
KDR	3791	MSKCC	GRCh37	4	55981504	55981504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	56	410	0	ENST00000263923.4:c.433A>G	p.Thr145Ala	p.T145A	ENST00000263923	NM_002253.2	145	Act/Gct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	170	419	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	193	465	2				ENST00000310581	NM_198253.2																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44923045	44923048	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0041196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	71	302	0	ENST00000377967.4:c.1909_1912del	p.Ser637ThrfsTer53	p.S637Tfs*53	ENST00000377967	NM_021140.2	636	CTATct/ct																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0041203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	47	582	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578230	7578230	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	155	690	0	ENST00000269305.4:c.619del	p.Asp207MetfsTer40	p.D207Mfs*40	ENST00000269305	NM_001126112.2	207	Gat/at																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	87	394	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249457	153249457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	34	500	0	ENST00000281708.4:c.1321C>G	p.Arg441Gly	p.R441G	ENST00000281708	NM_033632.3	441	Cgg/Ggg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298760	15298775	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGCGCATTCGTCCA	CTGGCGCATTCGTCCA	-			P-0041224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	95	713	0	ENST00000263388.2:c.1523_1538del	p.Val508AlafsTer86	p.V508Afs*86	ENST00000263388	NM_000435.2	508	gTGGACGAATGCGCCAGc/gc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443569	52443569	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	73	498	0	ENST00000460680.1:c.122+1G>T		p.X41_splice	ENST00000460680	NM_004656.3	41																																																																															
KDR	3791	MSKCC	GRCh37	4	55970823	55970824	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	54	541	0	ENST00000263923.4:c.1973dup	p.Leu659AlafsTer44	p.L659Afs*44	ENST00000263923	NM_002253.2	658	cag/caAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	114	380	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	116	648	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	52	417	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	125	596	3	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
INSR	3643	MSKCC	GRCh37	19	7166284	7166284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747464322		P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	118	764	0	ENST00000302850.5:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000302850	NM_000208.2	581	cGg/cAg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86649012	86649012	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	22	177	0	ENST00000274376.6:c.1292T>C	p.Ile431Thr	p.I431T	ENST00000274376	NM_002890.2	431	aTt/aCt																																																																														
RET	5979	MSKCC	GRCh37	10	43600475	43600475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756216318		P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	139	701	3	ENST00000355710.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000355710	NM_020975.4	234	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	67	457	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	38	474	7	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	68	305	0	ENST00000256196.4:c.68G>T	p.Gly23Val	p.G23V	ENST00000256196		23	gGc/gTc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	124	792	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692780	89692780	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	33	257	0	ENST00000371953.3:c.264T>A	p.Tyr88Ter	p.Y88*	ENST00000371953	NM_000314.4	88	taT/taA																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948755	71948755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	120	800	0	ENST00000298229.2:c.3470del	p.Gly1157AspfsTer45	p.G1157Dfs*45	ENST00000298229	NM_001567.3	1156	cGg/cg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163822	47163823	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	22	308	0	ENST00000409792.3:c.2303_2304del	p.Val768GlyfsTer8	p.V768Gfs*8	ENST00000409792	NM_014159.6	768	gTG/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100388	27100389	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TGCT			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	50	534	0	ENST00000324856.7:c.4100_4101insTGCT	p.Gln1367HisfsTer79	p.Q1367Hfs*79	ENST00000324856	NM_006015.4	1367	cag/caTGCTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639380	3639380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	109	780	0	ENST00000294008.3:c.4259del	p.Pro1420GlnfsTer30	p.P1420Qfs*30	ENST00000294008	NM_032444.2	1420	cCa/ca																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645350	67645350	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	68	474	0	ENST00000264010.4:c.615del	p.Thr207ProfsTer15	p.T207Pfs*15	ENST00000264010	NM_006565.3	205	aaG/aa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533460	63533460	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs534983760		P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	62	708	0	ENST00000307078.5:c.1694T>C	p.Met565Thr	p.M565T	ENST00000307078	NM_004655.3	565	aTg/aCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284990	15284990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	147	799	2	ENST00000263388.2:c.4625C>T	p.Ser1542Leu	p.S1542L	ENST00000263388	NM_000435.2	1542	tCg/tTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212287	36212287	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	101	726	0	ENST00000222270.7:c.2038G>T	p.Glu680Ter	p.E680*	ENST00000222270	NM_014727.1	680	Gag/Tag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693887	47693887	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	25	223	0	ENST00000233146.2:c.1601del	p.Arg534LeufsTer9	p.R534Lfs*9	ENST00000233146	NM_000251.2	534	cGt/ct																																																																														
ATR	545	MSKCC	GRCh37	3	142279204	142279204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	39	305	0	ENST00000350721.4:c.1442G>A	p.Gly481Asp	p.G481D	ENST00000350721	NM_001184.3	481	gGc/gAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576774	67576799	+	frameshift_variant	Frame_Shift_Del	DEL	CTCATAAAAGTTATAGAAATTTTAAT	CTCATAAAAGTTATAGAAATTTTAAT	-			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	20	207	0	ENST00000274335.5:c.860_885del	p.Ile287AsnfsTer2	p.I287Nfs*2	ENST00000274335		286	CTCATAAAAGTTATAGAAATTTTAATc/c																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149456852	149456853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	106	723	0	ENST00000286301.3:c.875dup	p.Phe293LeufsTer14	p.F293Lfs*14	ENST00000286301	NM_005211.3	292	ttc/ttTc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912168	29912168	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	20	182	0	ENST00000376809.5:c.889A>T	p.Arg297Ter	p.R297*	ENST00000376809	NM_002116.7	297	Aga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	140	440	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	153	629	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	116	310	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	143	337	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	33	256	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	283	329	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576891	7576891	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	253	582	0	ENST00000269305.4:c.955A>T	p.Lys319Ter	p.K319*	ENST00000269305	NM_001126112.2	319	Aag/Tag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965231	81965231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	199	515	2	ENST00000359376.3:c.2711G>A	p.Arg904Gln	p.R904Q	ENST00000359376	NM_002661.3	904	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576887	7576887	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	244	577	0	ENST00000269305.4:c.959A>G	p.Lys320Arg	p.K320R	ENST00000269305	NM_001126112.2	320	aAg/aGg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554484	63554492	+	inframe_deletion	In_Frame_Del	DEL	TAAGGAGTG	TAAGGAGTG	-			P-0041254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	238	617	0	ENST00000307078.5:c.247_255del	p.His83_Leu85del	p.H83_L85del	ENST00000307078	NM_004655.3	83	CACTCCTTA/-																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913503		P-0041295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	146	472	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074397	8074397	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	120	316	0	ENST00000377482.5:c.262C>T	p.Gln88Ter	p.Q88*	ENST00000377482	NM_018948.3	88	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023212	27023223	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGGGCCCTAG	CGCGGGCCCTAG	A			P-0041295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	46	107	0	ENST00000324856.7:c.318_329delinsA	p.Asn106LysfsTer7	p.N106Kfs*7	ENST00000324856	NM_006015.4	106	aaCGCGGGCCCTAGg/aaAg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0041296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	141	471	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0041296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	16	510	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0041296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	224	755	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139831	55139831	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758137485		P-0041296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	138	379	0	ENST00000257290.5:c.1492G>A	p.Ala498Thr	p.A498T	ENST00000257290	NM_006206.4	498	Gcc/Acc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179139	123179139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	30	330	0	ENST00000218089.9:c.588G>A	p.Met196Ile	p.M196I	ENST00000218089	NM_001042749.1	196	atG/atA																																																																														
RB1	5925	MSKCC	GRCh37	13	48878151	48878151	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587778869		P-0041296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	56	129	0	ENST00000267163.4:c.103C>T	p.Gln35Ter	p.Q35*	ENST00000267163	NM_000321.2	35	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108160488	108160488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs730881369		P-0041296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	107	309	0	ENST00000278616.4:c.4396C>T	p.Arg1466Ter	p.R1466*	ENST00000278616	NM_000051.3	1466	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589599	67589604	+	inframe_deletion	In_Frame_Del	DEL	TCAGTT	TCAGTT	-			P-0041296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	34	148	0	ENST00000274335.5:c.1365_1370del	p.Phe456_Gln457del	p.F456_Q457del	ENST00000274335		454	acTCAGTTt/act																																																																														
AURKA	6790	MSKCC	GRCh37	20	54945543	54945543	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs774552788		P-0041296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	174	757	0	ENST00000312783.6:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000312783	NM_198436.1	343	Cgg/Tgg																																																																														
MET	4233	MSKCC	GRCh37	7	116339565	116339565	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs779093896		P-0041296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	51	206	0	ENST00000397752.3:c.427C>T	p.Arg143Ter	p.R143*	ENST00000397752	NM_000245.2	143	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692827	89692836	+	frameshift_variant	Frame_Shift_Del	DEL	TTTGTGAAGA	TTTGTGAAGA	-			P-0041296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	36	135	0	ENST00000371953.3:c.312_321del	p.Cys105LeufsTer5	p.C105Lfs*5	ENST00000371953	NM_000314.4	104	tTTTGTGAAGAt/tt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375375	15375375	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146695616		P-0041296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	183	610	0	ENST00000263377.2:c.1052C>T	p.Ser351Leu	p.S351L	ENST00000263377	NM_058243.2	351	tCg/tTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637700	52637700	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	88	230	0	ENST00000394830.3:c.2616T>G	p.Phe872Leu	p.F872L	ENST00000394830	NM_018313.4	872	ttT/ttG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	39	278	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	40	541	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500832	8500832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756198535		P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	25	351	0	ENST00000356435.5:c.2050C>T	p.Arg684Trp	p.R684W	ENST00000356435		684	Cgg/Tgg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212293154	212293154	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	21	269	0	ENST00000342788.4:c.2698C>T	p.Gln900Ter	p.Q900*	ENST00000342788	NM_005235.2	900	Cag/Tag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78433885	78433885	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	21	244	0	ENST00000370768.2:c.214C>T	p.Gln72Ter	p.Q72*	ENST00000370768	NM_003902.3	72	Caa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970995	21971002	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCTCCT	CAGCTCCT	-			P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	24	435	0	ENST00000304494.5:c.356_363del	p.Glu119GlyfsTer20	p.E119Gfs*20	ENST00000304494	NM_000077.4	119	gAGGAGCTG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970995	21971002	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCTCCT	CAGCTCCT	-			P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	24	435	0	ENST00000304494.5:c.356_363del	p.Glu119GlyfsTer20	p.E119Gfs*20	ENST00000304494	NM_000077.4	119	gAGGAGCTG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970995	21971002	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCTCCT	CAGCTCCT	-			P-0041298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	24	435	0	ENST00000304494.5:c.356_363del	p.Glu119GlyfsTer20	p.E119Gfs*20	ENST00000304494	NM_000077.4	119	gAGGAGCTG/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0041303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	306	723	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519893		P-0041303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	152	742	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	368	596	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
PGR	5241	MSKCC	GRCh37	11	100909998	100910019	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAAGCTGTTGGTTTAACAAAT	ACAAGCTGTTGGTTTAACAAAT	TCAAAC			P-0041303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	33	325	2	ENST00000325455.5:c.2647-17_2651delinsGTTTGA		p.X883_splice	ENST00000325455	NM_001202474.3	883																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20153943	20153943	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	86	406	0	ENST00000379607.5:c.117C>G	p.Ile39Met	p.I39M	ENST00000379607	NM_001412.3	39	atC/atG																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0041309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	63	371	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs121913292		P-0041309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	195	452	0	ENST00000371953.3:c.389del	p.Arg130GlnfsTer4	p.R130Qfs*4	ENST00000371953	NM_000314.4	130	cGa/ca																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696461	47696461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	96	409	0	ENST00000347630.2:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000347630	NM_001007230.1	121	cGg/cAg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46609156	46609156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1462311206		P-0041309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	264	719	1	ENST00000263734.3:c.2215C>T	p.Arg739Trp	p.R739W	ENST00000263734	NM_001430.4	739	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101552	27101552	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	206	716	0	ENST00000324856.7:c.4837del	p.Met1613CysfsTer13	p.M1613Cfs*13	ENST00000324856	NM_006015.4	1612	Aaa/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398283	25398284	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCAGCT			P-0041309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	152	393	0	ENST00000256078.4:c.30_35dup	p.Ala11_Gly12dup	p.A11_G12dup	ENST00000256078	NM_033360.2	11	ggt/ggAGCTGGt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273208	115273208	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	127	536	0	ENST00000438362.2:c.1250del	p.Arg417LeufsTer21	p.R417Lfs*21	ENST00000438362	NM_001242891.1	417	cGt/ct																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118907	115118907	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	34	358	0	ENST00000257566.3:c.434A>T	p.Lys145Ile	p.K145I	ENST00000257566	NM_016569.3	145	aAa/aTa																																																																														
POLE	5426	MSKCC	GRCh37	12	133218927	133218927	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	343	810	0	ENST00000320574.5:c.5009A>G	p.Asp1670Gly	p.D1670G	ENST00000320574	NM_006231.2	1670	gAc/gGc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927436	49927436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	225	712	0	ENST00000296474.3:c.3868C>T	p.His1290Tyr	p.H1290Y	ENST00000296474	NM_002447.2	1290	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	30	564	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	18	466	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	46	281	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	147	323	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	81	259	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	93	285	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367288	50367288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775793261		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	71	328	0	ENST00000331340.3:c.95C>T	p.Pro32Leu	p.P32L	ENST00000331340	NM_006060.4	32	cCg/cTg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353918	15353918	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	19	326	2	ENST00000263377.2:c.2962C>T	p.Gln988Ter	p.Q988*	ENST00000263377	NM_058243.2	988	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445229	49445229	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371911838		P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	70	727	1	ENST00000301067.7:c.2237G>A	p.Arg746Gln	p.R746Q	ENST00000301067	NM_003482.3	746	cGg/cAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29665762	29665762	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	48	239	0	ENST00000358273.4:c.6860G>C	p.Ser2287Thr	p.S2287T	ENST00000358273	NM_001042492.2	2287	aGt/aCt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681045	117681045	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	39	362	0	ENST00000368508.3:c.3575A>C	p.Asp1192Ala	p.D1192A	ENST00000368508	NM_002944.2	1192	gAt/gCt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123164920	123164920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	63	274	0	ENST00000218089.9:c.233G>A	p.Gly78Glu	p.G78E	ENST00000218089	NM_001042749.1	78	gGa/gAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519931		P-0041319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	17	402	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141426	11141426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11537676		P-0041319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	153	588	0	ENST00000344626.4:c.3403C>T	p.Arg1135Trp	p.R1135W	ENST00000344626	NM_003072.3	1135	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0041319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	60	313	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788618	3788618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	19	398	0	ENST00000262367.5:c.4336C>A	p.Arg1446Ser	p.R1446S	ENST00000262367	NM_004380.2	1446	Cgc/Agc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47147513	47147513	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	72	348	0	ENST00000409792.3:c.4813T>A	p.Tyr1605Asn	p.Y1605N	ENST00000409792	NM_014159.6	1605	Tat/Aat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638582	176638582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	175	571	0	ENST00000439151.2:c.3182G>A	p.Ser1061Asn	p.S1061N	ENST00000439151	NM_022455.4	1061	aGt/aAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932277	39932278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	150	839	0	ENST00000378444.4:c.2321dup	p.Leu775ValfsTer42	p.L775Vfs*42	ENST00000378444	NM_001123385.1	774	aag/aaAg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0041327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	157	406	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222515	2222515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	193	621	0	ENST00000326181.6:c.709C>T	p.Pro237Ser	p.P237S	ENST00000326181	NM_032271.2	237	Ccc/Tcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3860755	3860755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs978232300		P-0041327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	98	321	0	ENST00000262367.5:c.824C>T	p.Pro275Leu	p.P275L	ENST00000262367	NM_004380.2	275	cCa/cTa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117541	4117541	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519808		P-0041327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	115	245	0	ENST00000262948.5:c.179A>C	p.Gln60Pro	p.Q60P	ENST00000262948	NM_030662.3	60	cAg/cCg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965997	18965997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	201	548	0	ENST00000262803.5:c.1490G>A	p.Gly497Glu	p.G497E	ENST00000262803	NM_002911.3	497	gGg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0041338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	214	634	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966617	25966617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	255	592	0	ENST00000435504.4:c.2589G>C	p.Lys863Asn	p.K863N	ENST00000435504		863	aaG/aaC																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931654	39931654	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749047692		P-0041338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	265	617	0	ENST00000378444.4:c.2945C>T	p.Thr982Ile	p.T982I	ENST00000378444	NM_001123385.1	982	aCc/aTc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587776934		P-0041343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	106	495	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425644	49425644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1057517992		P-0041343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	114	607	0	ENST00000301067.7:c.12844C>T	p.Arg4282Ter	p.R4282*	ENST00000301067	NM_003482.3	4282	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711979	89711980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	96	256	1	ENST00000371953.3:c.600dup	p.Glu201Ter	p.E201*	ENST00000371953	NM_000314.4	199	-/T																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205663	128205674	+	inframe_deletion	In_Frame_Del	DEL	GAGACGCGCGCC	GAGACGCGCGCC	-			P-0041343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	404	475	0	ENST00000341105.2:c.201_212del	p.Ala68_Ser71del	p.A68_S71del	ENST00000341105	NM_032638.4	67	cgGGCGCGCGTCTCc/cgc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39074473	39074473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	39	400	0	ENST00000357387.3:c.7G>A	p.Ala3Thr	p.A3T	ENST00000357387	NM_152756.3	3	Gcg/Acg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910805	29910805	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0041343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	90	444	0	ENST00000376809.5:c.343+2T>G		p.X115_splice	ENST00000376809	NM_002116.7	115																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	102	423	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	56	544	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	72	564	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061169	38061169	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1489466891		P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	67	260	1	ENST00000250448.2:c.820del	p.Ala274ProfsTer47	p.A274Pfs*47	ENST00000250448	NM_004496.3	274	Gcc/cc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	105	624	0	ENST00000227507.2:c.859C>T	p.Pro287Ser	p.P287S	ENST00000227507	NM_053056.2	287	Ccc/Tcc																																																																														
ATM	472	MSKCC	GRCh37	11	108151825	108151825	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	26	327	1	ENST00000278616.4:c.3510del	p.Lys1170AsnfsTer11	p.K1170Nfs*11	ENST00000278616	NM_000051.3	1169	gAa/ga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	201	624	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	81	664	1	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984559	72984559	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770062973		P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	137	589	1	ENST00000268489.5:c.3025G>A	p.Val1009Met	p.V1009M	ENST00000268489	NM_006885.3	1009	Gtg/Atg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432208	121432208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs137853240		P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	63	429	0	ENST00000257555.6:c.955G>A	p.Gly319Ser	p.G319S	ENST00000257555		319	Ggt/Agt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829701	72829701	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	93	488	0	ENST00000268489.5:c.6880C>T	p.Arg2294Ter	p.R2294*	ENST00000268489	NM_006885.3	2294	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094289	27094290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	67	264	0	ENST00000324856.7:c.2999_3000dup	p.Ser1001LeufsTer39	p.S1001Lfs*39	ENST00000324856	NM_006015.4	999	-/TC																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699491	117699491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	45	288	0	ENST00000369458.3:c.150G>T	p.Glu50Asp	p.E50D	ENST00000369458	NM_024626.3	50	gaG/gaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685306	89685313	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATACAATC	ATACAATC	-			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	21	166	0	ENST00000371953.3:c.201_208del	p.Tyr68LeufsTer3	p.Y68Lfs*3	ENST00000371953	NM_000314.4	67	atATACAATCtt/attt																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316396	14316397	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	39	338	0	ENST00000256196.4:c.208_209delinsTT	p.Ala70Leu	p.A70L	ENST00000256196		70	GCa/TTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343387	118343387	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782213033		P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	59	338	1	ENST00000534358.1:c.1513G>A	p.Asp505Asn	p.D505N	ENST00000534358	NM_005933.3	505	Gat/Aat																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139045	50139045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	120	621	0	ENST00000246792.3:c.518C>T	p.Ala173Val	p.A173V	ENST00000246792	NM_006270.3	173	gCc/gTc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795105	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	103	628	0	ENST00000334409.5:c.104_105del	p.Pro35HisfsTer70	p.P35Hfs*70	ENST00000334409	NM_005018.2	35	cCC/c																																																																														
TERT	7015	MSKCC	GRCh37	5	1294907	1294907	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	13	89	0	ENST00000310581.5:c.198del	p.Ala67ProfsTer11	p.A67Pfs*11	ENST00000310581	NM_198253.2	66	ccC/cc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131925514	131925514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	22	213	0	ENST00000265335.6:c.1437G>T	p.Gln479His	p.Q479H	ENST00000265335		479	caG/caT																																																																														
ATRX	546	MSKCC	GRCh37	X	76778752	76778752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	32	331	0	ENST00000373344.5:c.6827C>T	p.Ala2276Val	p.A2276V	ENST00000373344	NM_000489.3	2276	gCt/gTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76939984	76939984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	46	429	1	ENST00000373344.5:c.764C>T	p.Thr255Ile	p.T255I	ENST00000373344	NM_000489.3	255	aCa/aTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76940035	76940035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	74	369	0	ENST00000373344.5:c.713C>T	p.Ala238Val	p.A238V	ENST00000373344	NM_000489.3	238	gCt/gTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	84	342	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0041475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	215	596	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70333863	70333863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs750883311		P-0041475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	121	367	0	ENST00000373644.4:c.1768C>T	p.Arg590Ter	p.R590*	ENST00000373644	NM_030625.2	590	Cga/Tga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026184	71026184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	78	289	0	ENST00000318789.4:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000318789	NM_032682.5	480	Gaa/Aaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844780	156844780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	134	597	0	ENST00000524377.1:c.1334G>A	p.Arg445Lys	p.R445K	ENST00000524377	NM_002529.3	445	aGa/aAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431508	49431508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	222	634	0	ENST00000301067.7:c.9631G>A	p.Glu3211Lys	p.E3211K	ENST00000301067	NM_003482.3	3211	Gaa/Aaa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435531	110435531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	168	425	0	ENST00000375856.3:c.2870C>T	p.Ser957Leu	p.S957L	ENST00000375856	NM_003749.2	957	tCg/tTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216151	36216151	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	223	581	0	ENST00000222270.7:c.3559A>C	p.Met1187Leu	p.M1187L	ENST00000222270	NM_014727.1	1187	Atg/Ctg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537980	212537980	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0041475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	109	323	0	ENST00000342788.4:c.1625A>C	p.Glu542Ala	p.E542A	ENST00000342788	NM_005235.2	542	gAa/gCa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217193	66217193	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	106	421	0	ENST00000273854.3:c.2422A>C	p.Ile808Leu	p.I808L	ENST00000273854	NM_004439.5	808	Atc/Ctc																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158504	26158504	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	172	435	0	ENST00000289316.2:c.107A>C	p.Glu36Ala	p.E36A	ENST00000289316	NM_138720.2	36	gAg/gCg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5050832	5050832	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0041475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	74	362	0	ENST00000381652.3:c.614+1G>T		p.X205_splice	ENST00000381652	NM_004972.3	205																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	104	383	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150496	157150496	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs17318151		P-0041476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	144	529	0	ENST00000346085.5:c.1678A>G	p.Ile560Val	p.I560V	ENST00000346085	NM_020732.3	560	Att/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs967461896		P-0041476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	171	619	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																														
MET	4233	MSKCC	GRCh37	7	116412030	116412048	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACTTTTCCAGAAGGTATA	TACTTTTCCAGAAGGTATA	-			P-0041506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	80	908	0	ENST00000397752.3:c.3016_3028+6del		p.X1006_splice	ENST00000397752	NM_000245.2	1006																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	79	662	0				ENST00000310581	NM_198253.2																																																																																
VHL	7428	MSKCC	GRCh37	3	10183739	10183739	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs5030802		P-0041511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	95	995	1	ENST00000256474.2:c.208G>T	p.Glu70Ter	p.E70*	ENST00000256474	NM_000551.3	70	Gag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174383	11174383	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057524044		P-0041511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	76	697	1	ENST00000361445.4:c.7292T>C	p.Leu2431Pro	p.L2431P	ENST00000361445	NM_004958.3	2431	cTg/cCg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866383	37866383	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776960538		P-0041511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	124	919	1	ENST00000269571.5:c.688C>T	p.Pro230Ser	p.P230S	ENST00000269571		230	Cca/Tca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584650	52584650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	104	812	1	ENST00000394830.3:c.4363G>T	p.Gly1455Ter	p.G1455*	ENST00000394830	NM_018313.4	1455	Gga/Tga																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0041540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	303	697	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PAK7	0	MSKCC	GRCh37	20	9538311	9538311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	24	500	0	ENST00000353224.5:c.1687G>A	p.Gly563Arg	p.G563R	ENST00000353224	NM_177990.2	563	Gga/Aga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670400	88670400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	161	402	0	ENST00000360948.2:c.1286C>T	p.Thr429Ile	p.T429I	ENST00000360948	NM_001012338.2	429	aCt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0041604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	115	838	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0041604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	65	415	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0041604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	35	305	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0041604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	35	305	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151842339	151842339	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs151023183		P-0041646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	167	282	0	ENST00000262189.6:c.14073C>A	p.Tyr4691Ter	p.Y4691*	ENST00000262189	NM_170606.2	4691	taC/taA																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59770823	59770823	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	76	328	0	ENST00000259008.2:c.2543G>C	p.Arg848Pro	p.R848P	ENST00000259008	NM_032043.2	848	cGc/cCc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390659	139390660	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	406	937	0	ENST00000277541.6:c.7531dup	p.Thr2511AsnfsTer5	p.T2511Nfs*5	ENST00000277541	NM_017617.3	2511	acc/aAcc																																																																														
ATRX	546	MSKCC	GRCh37	X	76764072	76764075	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0041646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	119	513	0	ENST00000373344.5:c.7233_7236del	p.Asn2411LysfsTer15	p.N2411Kfs*15	ENST00000373344	NM_000489.3	2411	aaCAGA/aa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174386	11174386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	188	618	0	ENST00000361445.4:c.7289G>T	p.Arg2430Met	p.R2430M	ENST00000361445	NM_004958.3	2430	aGg/aTg																																																																														
MPL	4352	MSKCC	GRCh37	1	43804981	43804981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	35	493	0	ENST00000372470.3:c.431G>T	p.Gly144Val	p.G144V	ENST00000372470	NM_005373.2	144	gGg/gTg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248285	59248285	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	21	150	0	ENST00000371222.2:c.458del	p.Gly153AlafsTer29	p.G153Afs*29	ENST00000371222	NM_002228.3	153	gGc/gc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	71	363	0	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																														
ATM	472	MSKCC	GRCh37	11	108196885	108196885	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1064795166		P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	78	324	0	ENST00000278616.4:c.6908A>G	p.Lys2303Arg	p.K2303R	ENST00000278616	NM_000051.3	2303	aAg/aGg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	235	616	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643747	38643747	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	155	765	0	ENST00000299084.4:c.1219del	p.Leu407TrpfsTer2	p.L407Wfs*2	ENST00000299084	NM_152594.2	406	gCc/gc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89337295	89337295	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1250432793		P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	167	723	1	ENST00000301030.4:c.7736G>A	p.Arg2579His	p.R2579H	ENST00000301030	NM_001256183.1	2579	cGc/cAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349019	89349019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	179	886	0	ENST00000301030.4:c.3931C>T	p.Arg1311Ter	p.R1311*	ENST00000301030	NM_001256183.1	1311	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41199707	41199707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	170	781	0	ENST00000357654.3:c.5420T>C	p.Ile1807Thr	p.I1807T	ENST00000357654	NM_007294.3	1807	aTt/aCt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	175	822	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435168	56435168	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	137	816	0	ENST00000407977.2:c.1969del	p.Arg657GlyfsTer43	p.R657Gfs*43	ENST00000407977		657	Cgg/gg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152184	11152184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	186	728	0	ENST00000344626.4:c.4372C>A	p.Leu1458Ile	p.L1458I	ENST00000344626	NM_003072.3	1458	Ctc/Atc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	225	1064	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
CASP8	841	MSKCC	GRCh37	2	202149917	202149917	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	130	671	0	ENST00000358485.4:c.1358C>G	p.Pro453Arg	p.P453R	ENST00000358485	NM_001080125.1	453	cCg/cGg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	40	601	0	ENST00000237289.4:c.1368del	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	95	529	0	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859709	151859709	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	87	367	0	ENST00000262189.6:c.10953G>C	p.Glu3651Asp	p.E3651D	ENST00000262189	NM_170606.2	3651	gaG/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	141	280	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	250	757	0	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649544	206649544	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370426628		P-0041682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	144	487	0	ENST00000367120.3:c.379C>T	p.Arg127Trp	p.R127W	ENST00000367120	NM_014002.3	127	Cgg/Tgg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419949	152419949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	111	636	1	ENST00000206249.3:c.1636G>A	p.Ala546Thr	p.A546T	ENST00000206249	NM_000125.3	546	Gcc/Acc																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495647	72495647	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	66	311	0	ENST00000477973.2:c.423G>A	p.Arg142Lys	p.R142K	ENST00000477973	NM_012234.5	142	aGa/aAa																																																																														
ERF	2077	MSKCC	GRCh37	19	42754644	42754644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	97	766	0	ENST00000222329.4:c.96T>G	p.Phe32Leu	p.F32L	ENST00000222329	NM_006494.2	32	ttT/ttG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs28934875		P-0041699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	150	874	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601304	28601304	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	27	118	0	ENST00000241453.7:c.2128T>A	p.Phe710Ile	p.F710I	ENST00000241453	NM_004119.2	710	Ttt/Att																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167720	185167720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	48	208	0	ENST00000265026.3:c.1043C>A	p.Thr348Lys	p.T348K	ENST00000265026	NM_004721.4	348	aCa/aAa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80168986	80168986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	32	164	0	ENST00000265081.6:c.3182G>T	p.Arg1061Ile	p.R1061I	ENST00000265081	NM_002439.4	1061	aGa/aTa																																																																														
APC	324	MSKCC	GRCh37	5	112174117	112174117	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	19	85	0	ENST00000257430.4:c.2827del	p.Ser943GlnfsTer12	p.S943Qfs*12	ENST00000257430	NM_000038.5	942	aaT/aa																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0041717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	119	629	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	58	341	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	28	463	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0041717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	53	365	1	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	42	600	1	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307280	65307283	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0041717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	25	438	0	ENST00000342505.4:c.2405_2408del	p.Lys802ArgfsTer11	p.K802Rfs*11	ENST00000342505	NM_002227.2	802	aAAGAg/ag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100897	27100897	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0041717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	107	677	0	ENST00000324856.7:c.4179C>G	p.Tyr1393Ter	p.Y1393*	ENST00000324856	NM_006015.4	1393	taC/taG																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118914	70118915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	144	961	0	ENST00000245479.2:c.487dup	p.Val163GlyfsTer89	p.V163Gfs*89	ENST00000245479	NM_000346.3	162	-/G																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249012	55249013	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGTTT			P-0041834-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			565	14	469	0	ENST00000275493.2:c.2310_2311insGGGTTT	p.Asp770_Asn771insGlyPhe	p.D770_N771insGF	ENST00000275493	NM_005228.3	770	-/GGGTTT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	307	480	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156740	20156740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	155	215	0	ENST00000379607.5:c.17G>A	p.Gly6Asp	p.G6D	ENST00000379607	NM_001412.3	6	gGt/gAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340407	8340407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201651279		P-0041837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	133	586	0	ENST00000356435.5:c.5189G>A	p.Arg1730Gln	p.R1730Q	ENST00000356435		1730	cGg/cAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0041850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	64	324	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717713	89717714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	165	444	0	ENST00000371953.3:c.740dup	p.Leu247PhefsTer6	p.L247Ffs*6	ENST00000371953	NM_000314.4	246	-/T																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436599	49436599	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs886041405		P-0041850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	123	748	2	ENST00000301067.7:c.5707C>T	p.Arg1903Ter	p.R1903*	ENST00000301067	NM_003482.3	1903	Cga/Tga																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553776	106553776	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs941078758		P-0041850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	59	366	0	ENST00000369096.4:c.1741G>A	p.Ala581Thr	p.A581T	ENST00000369096	NM_001198.3	581	Gcc/Acc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163896	152163896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	63	502	0	ENST00000206249.3:c.617A>G	p.Lys206Arg	p.K206R	ENST00000206249	NM_000125.3	206	aAg/aGg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949057	44949063	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGTAT	AGTGTAT	-			P-0041850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	51	461	0	ENST00000377967.4:c.3620_3626del	p.Val1207GlyfsTer12	p.V1207Gfs*12	ENST00000377967	NM_021140.2	1206	ccAGTGTAT/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	72	138	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0041887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	91	87	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	88	1111	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0041887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	29	129	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405953	157405954	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	44	658	1	ENST00000346085.5:c.2201dup	p.Ser736IlefsTer27	p.S736Ifs*27	ENST00000346085	NM_020732.3	732	ccg/ccGg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1805488	1805488	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373496046		P-0041887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1304	85	1116	3	ENST00000260795.2:c.1000G>A	p.Ala334Thr	p.A334T	ENST00000260795		334	Gcc/Acc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468391	89468391	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	21	261	0	ENST00000336596.2:c.1925T>G	p.Leu642Arg	p.L642R	ENST00000336596	NM_005233.5	642	cTt/cGt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	29	346	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0041905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	112	883	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260707	16260707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	48	706	0	ENST00000375759.3:c.7972G>T	p.Val2658Leu	p.V2658L	ENST00000375759	NM_015001.2	2658	Gtg/Ttg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660472	67660472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	33	442	0	ENST00000264010.4:c.1372A>G	p.Lys458Glu	p.K458E	ENST00000264010	NM_006565.3	458	Aag/Gag																																																																														
MALT1	10892	MSKCC	GRCh37	18	56402502	56402502	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	23	270	0	ENST00000348428.3:c.1544T>A	p.Leu515Ter	p.L515*	ENST00000348428	NM_006785.3	515	tTa/tAa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231825	36231825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	53	711	0	ENST00000300305.3:c.559G>T	p.Ala187Ser	p.A187S	ENST00000300305		187	Gcc/Tcc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280085	66280085	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	30	336	1	ENST00000273854.3:c.1604T>A	p.Val535Asp	p.V535D	ENST00000273854	NM_004439.5	535	gTt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	132	310	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692792	89692792	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs779530981		P-0041948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	277	315	0	ENST00000371953.3:c.276C>A	p.Asp92Glu	p.D92E	ENST00000371953	NM_000314.4	92	gaC/gaA																																																																														
STAT3	6774	MSKCC	GRCh37	17	40498610	40498610	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	202	385	0	ENST00000264657.5:c.250C>T	p.Arg84Ter	p.R84*	ENST00000264657	NM_139276.2	84	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70339326	70339330	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTG	AGGTG	-			P-0041948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	187	417	0	ENST00000374080.3:c.204+1_204+5del		p.X68_splice	ENST00000374080		68																																																																															
ATRX	546	MSKCC	GRCh37	X	76937076	76937076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	118	340	0	ENST00000373344.5:c.3672G>C	p.Gln1224His	p.Q1224H	ENST00000373344	NM_000489.3	1224	caG/caC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	99	197	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	127	244	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0041987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	161	458	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577600	7577600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	66	472	0	ENST00000269305.4:c.681del	p.Asp228ThrfsTer19	p.D228Tfs*19	ENST00000269305	NM_001126112.2	227	tcT/tc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891287	101891287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757374917		P-0041987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	101	407	0	ENST00000374994.4:c.248C>T	p.Pro83Leu	p.P83L	ENST00000374994	NM_004612.2	83	cCg/cTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132438	11132438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	133	722	2	ENST00000344626.4:c.2654G>T	p.Arg885Leu	p.R885L	ENST00000344626	NM_003072.3	885	cGc/cTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30954259	30954259	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	111	311	0	ENST00000375687.4:c.130A>T	p.Lys44Ter	p.K44*	ENST00000375687	NM_015338.5	44	Aag/Tag																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31383280	31383280	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778547539		P-0041987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	201	437	0	ENST00000328111.2:c.1192C>T	p.Arg398Cys	p.R398C	ENST00000328111	NM_006892.3	398	Cgc/Tgc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922830	44922831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0041987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	150	339	0	ENST00000377967.4:c.1692_1693dup	p.Gln565ArgfsTer29	p.Q565Rfs*29	ENST00000377967	NM_021140.2	564	ggg/ggGCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	693	830	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	191	507	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	79	294	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61213503	61213503	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768954974		P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	196	550	0	ENST00000301761.2:c.461G>A	p.Arg154His	p.R154H	ENST00000301761	NM_017841.2	154	cGt/cAt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483946	88483946	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	54	770	0	ENST00000360948.2:c.1624del	p.Arg542GlufsTer30	p.R542Efs*30	ENST00000360948	NM_001012338.2	542	Cga/ga																																																																														
TET2	54790	MSKCC	GRCh37	4	106157699	106157699	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs765107506		P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	81	395	0	ENST00000380013.4:c.2600A>G	p.Tyr867Cys	p.Y867C	ENST00000380013	NM_001127208.2	867	tAt/tGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878640	151878640	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	125	642	0	ENST00000262189.6:c.6305A>T	p.His2102Leu	p.H2102L	ENST00000262189	NM_170606.2	2102	cAt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0042108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	130	565	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
CUL3	8452	MSKCC	GRCh37	2	225342918	225342918	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0042108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	28	246	0	ENST00000264414.4:c.2174A>T	p.Glu725Val	p.E725V	ENST00000264414	NM_003590.4	725	gAg/gTg																																																																														
MST1	4485	MSKCC	GRCh37	3	49725208	49725208	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752708882		P-0042108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	15	142	1	ENST00000449682.2:c.217C>T	p.Arg73Cys	p.R73C	ENST00000449682	NM_020998.3	73	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	710	720	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609813	117609813	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761155034		P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	313	593	0	ENST00000368508.3:c.6886G>A	p.Glu2296Lys	p.E2296K	ENST00000368508	NM_002944.2	2296	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	284	408	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT	rs121913227		P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	390	387	1	ENST00000288602.6:c.1798_1799delinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
HGF	3082	MSKCC	GRCh37	7	81388032	81388032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	196	427	1	ENST00000222390.5:c.343G>A	p.Glu115Lys	p.E115K	ENST00000222390	NM_000601.4	115	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024380	31024380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201302084		P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	419	748	0	ENST00000375687.4:c.3865C>T	p.Arg1289Trp	p.R1289W	ENST00000375687	NM_015338.5	1289	Cgg/Tgg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458512	120458512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	328	671	2	ENST00000256646.2:c.6833C>T	p.Thr2278Ile	p.T2278I	ENST00000256646	NM_024408.3	2278	aCc/aTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	240	461	0				ENST00000310581	NM_198253.2																																																																																
ARID5B	84159	MSKCC	GRCh37	10	63852247	63852247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	387	613	1	ENST00000279873.7:c.3025G>A	p.Ala1009Thr	p.A1009T	ENST00000279873	NM_032199.2	1009	Gcg/Acg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609728	28609728	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1195767772		P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	237	637	0	ENST00000241453.7:c.1501C>G	p.Leu501Val	p.L501V	ENST00000241453	NM_004119.2	501	Cta/Gta																																																																														
MGA	23269	MSKCC	GRCh37	15	42053952	42053952	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	172	260	0	ENST00000219905.7:c.7414C>T	p.Gln2472Ter	p.Q2472*	ENST00000219905	NM_001164273.1	2472	Cag/Tag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448294	56448294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	414	815	0	ENST00000407977.2:c.353C>T	p.Pro118Leu	p.P118L	ENST00000407977		118	cCc/cTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533934	63533934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1349969629		P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	283	530	1	ENST00000307078.5:c.1220C>T	p.Ser407Phe	p.S407F	ENST00000307078	NM_004655.3	407	tCc/tTc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628414	86628414	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	37	248	0	ENST00000274376.6:c.783T>G	p.Cys261Trp	p.C261W	ENST00000274376	NM_002890.2	261	tgT/tgG																																																																														
APC	324	MSKCC	GRCh37	5	112178582	112178582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	24	340	0	ENST00000257430.4:c.7291A>G	p.Arg2431Gly	p.R2431G	ENST00000257430	NM_000038.5	2431	Aga/Gga																																																																														
RAD50	10111	MSKCC	GRCh37	5	131951716	131951716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	103	204	0	ENST00000265335.6:c.3058G>A	p.Asp1020Asn	p.D1020N	ENST00000265335		1020	Gat/Aat																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056259	26056260	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	461	513	1	ENST00000343677.2:c.397_398delinsAA	p.Gly133Lys	p.G133K	ENST00000343677	NM_005319.3	133	GGg/AAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974361	93974361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	248	458	0	ENST00000369303.4:c.1693G>A	p.Gly565Arg	p.G565R	ENST00000369303	NM_004440.3	565	Ggg/Agg																																																																														
HGF	3082	MSKCC	GRCh37	7	81386526	81386526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	211	375	0	ENST00000222390.5:c.461C>T	p.Ser154Phe	p.S154F	ENST00000222390	NM_000601.4	154	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	132	449	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732964	30732964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	195	487	0	ENST00000359013.4:c.1652A>G	p.Glu551Gly	p.E551G	ENST00000359013	NM_001024847.2	551	gAg/gGg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643770	52643771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	135	675	0	ENST00000394830.3:c.2125dup	p.Ile709AsnfsTer14	p.I709Nfs*14	ENST00000394830	NM_018313.4	709	att/aAtt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522720	176522720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757092386		P-0042147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	80	686	3	ENST00000292408.4:c.1817G>A	p.Arg606Gln	p.R606Q	ENST00000292408	NM_213647.1	606	cGg/cAg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265683	10265683	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	59	686	0	ENST00000340748.4:c.1494A>G	p.Ile498Met	p.I498M	ENST00000340748		498	atA/atG																																																																														
ALK	238	MSKCC	GRCh37	2	29497974	29497974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	61	501	1	ENST00000389048.3:c.2032G>A	p.Asp678Asn	p.D678N	ENST00000389048	NM_004304.4	678	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0042156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	516	711	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039248	49039248	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1131690882		P-0042156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	607	510	0	ENST00000267163.4:c.2325+1G>A		p.X775_splice	ENST00000267163	NM_000321.2	775																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223182	36223182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	629	980	2	ENST00000222270.7:c.5732G>A	p.Arg1911Lys	p.R1911K	ENST00000222270	NM_014727.1	1911	aGa/aAa																																																																														
RET	5979	MSKCC	GRCh37	10	43609043	43609043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	482	677	2	ENST00000355710.3:c.1799G>T	p.Arg600Leu	p.R600L	ENST00000355710	NM_020975.4	600	cGg/cTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133235911	133235911	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201744227		P-0042156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	438	609	0	ENST00000320574.5:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000320574	NM_006231.2	1082	cGc/cAc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518985	103518985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	337	498	0	ENST00000355739.4:c.2323C>A	p.Leu775Ile	p.L775I	ENST00000355739	NM_000123.3	775	Ctc/Atc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437611	110437611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	893	781	0	ENST00000375856.3:c.790G>T	p.Val264Phe	p.V264F	ENST00000375856	NM_003749.2	264	Gtc/Ttc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627792	187627792	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0042156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	475	600	0	ENST00000441802.2:c.3190A>T	p.Arg1064Ter	p.R1064*	ENST00000441802	NM_005245.3	1064	Aga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513200	106513200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	270	343	2	ENST00000359195.3:c.2104G>A	p.Glu702Lys	p.E702K	ENST00000359195	NM_002649.2	702	Gag/Aag																																																																														
ABL1	25	MSKCC	GRCh37	9	133738374	133738374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	404	625	0	ENST00000318560.5:c.774G>T	p.Glu258Asp	p.E258D	ENST00000318560	NM_005157.4	258	gaG/gaT																																																																														
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779811318		P-0042200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	21	484	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	89	384	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	301	1000	1	ENST00000269305.4:c.403del	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929410	32929410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	81	426	0	ENST00000380152.3:c.7420G>A	p.Glu2474Lys	p.E2474K	ENST00000380152		2474	Gaa/Aaa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1650176	1650176	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0042215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	149	768	0	ENST00000344749.5:c.72G>A	p.Met24Ile	p.M24I	ENST00000344749	NM_001136139.2	24	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0042216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	365	895	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0042216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	249	675	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288168	21288168	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	199	570	0	ENST00000354336.3:c.413A>G	p.Asp138Gly	p.D138G	ENST00000354336	NM_005207.3	138	gAt/gGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587777790		P-0042216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	236	200	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139820290	139820290	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1265393184		P-0042216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	96	776	0	ENST00000247668.2:c.1443G>T	p.Lys481Asn	p.K481N	ENST00000247668	NM_021138.3	481	aaG/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0042219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	121	385	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993128	72993128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142256050		P-0042219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	217	850	1	ENST00000268489.5:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000268489	NM_006885.3	306	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0042219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	124	658	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0042226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	110	467	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	155	1072	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T	rs730881673		P-0042226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	51	556	0	ENST00000304494.5:c.131dup	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T	rs730881673		P-0042226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	51	556	0	ENST00000304494.5:c.131dup	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401368	139401368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773926521		P-0042226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	120	961	1	ENST00000277541.6:c.3701G>A	p.Arg1234Gln	p.R1234Q	ENST00000277541	NM_017617.3	1234	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	85	536	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0042238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	218	954	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14015990	14015990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	47	340	0	ENST00000311895.7:c.310G>C	p.Gly104Arg	p.G104R	ENST00000311895	NM_005236.2	104	Ggt/Cgt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647280	23647280	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	82	619	0	ENST00000261584.4:c.587G>C	p.Arg196Thr	p.R196T	ENST00000261584	NM_024675.3	196	aGa/aCa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952344	17952344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	182	1086	1	ENST00000458235.1:c.996C>A	p.Phe332Leu	p.F332L	ENST00000458235	NM_000215.3	332	ttC/ttA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	184	775	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
APC	324	MSKCC	GRCh37	5	112173451	112173451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	65	341	0	ENST00000257430.4:c.2162del	p.Gly721GlufsTer6	p.G721Efs*6	ENST00000257430	NM_000038.5	720	atG/at																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117851	70117851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	156	645	2	ENST00000245479.2:c.319C>T	p.Arg107Trp	p.R107W	ENST00000245479	NM_000346.3	107	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424740	49424740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs917419349		P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	174	819	2	ENST00000301067.7:c.13607G>A	p.Arg4536Gln	p.R4536Q	ENST00000301067	NM_003482.3	4536	cGa/cAa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488250	56488250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs865824076		P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	181	732	1	ENST00000267101.3:c.1769C>T	p.Pro590Leu	p.P590L	ENST00000267101	NM_001982.3	590	cCc/cTc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876349	35876349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	106	605	0	ENST00000303115.3:c.1141A>G	p.Ile381Val	p.I381V	ENST00000303115	NM_002185.3	381	Att/Gtt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444282	50444282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	74	399	0	ENST00000331340.3:c.212G>T	p.Cys71Phe	p.C71F	ENST00000331340	NM_006060.4	71	tGt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	310	184	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579316	7579317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	300	447	0	ENST00000269305.4:c.370dup	p.Cys124LeufsTer25	p.C124Lfs*25	ENST00000269305	NM_001126112.2	124	tgc/tTgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310483	65310483	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs751933525		P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	86	432	0	ENST00000342505.4:c.2205C>G	p.Ile735Met	p.I735M	ENST00000342505	NM_002227.2	735	atC/atG																																																																														
RB1	5925	MSKCC	GRCh37	13	48919236	48919236	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	11	83	0	ENST00000267163.4:c.401T>A	p.Leu134Ter	p.L134*	ENST00000267163	NM_000321.2	134	tTa/tAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047674	180047674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	132	593	1	ENST00000261937.6:c.2341G>A	p.Gly781Ser	p.G781S	ENST00000261937	NM_182925.4	781	Ggt/Agt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8527354	8527354	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	29	151	0	ENST00000356435.5:c.542-1G>A		p.X181_splice	ENST00000356435		181																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775657	9775657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	215	491	0	ENST00000377346.4:c.200C>A	p.Ala67Asp	p.A67D	ENST00000377346	NM_005026.3	67	gCc/gAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097721	27097721	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	95	386	0	ENST00000324856.7:c.3310G>C	p.Glu1104Gln	p.E1104Q	ENST00000324856	NM_006015.4	1104	Gaa/Caa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981551	201981569	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGGGCCCTTTGGTGAG	CCCAGGGCCCTTTGGTGAG	-			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	64	612	0	ENST00000359651.3:c.465_478+5del		p.X155_splice	ENST00000359651		155																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348902	118348902	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	34	151	0	ENST00000534358.1:c.3555G>C	p.Lys1185Asn	p.K1185N	ENST00000534358	NM_005933.3	1185	aaG/aaC																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864774	57864774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	112	594	0	ENST00000228682.2:c.2251C>G	p.Leu751Val	p.L751V	ENST00000228682	NM_005269.2	751	Ctg/Gtg																																																																														
RB1	5925	MSKCC	GRCh37	13	48941654	48941654	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	89	149	0	ENST00000267163.4:c.964del	p.Glu322LysfsTer10	p.E322Kfs*10	ENST00000267163	NM_000321.2	322	Gaa/aa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785624	50785624	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	226	454	0	ENST00000398568.2:c.614T>C	p.Ile205Thr	p.I205T	ENST00000398568	NM_001042412.1	205	aTa/aCa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41228615	41228615	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	66	282	0	ENST00000357654.3:c.4374G>C	p.Gln1458His	p.Q1458H	ENST00000357654	NM_007294.3	1458	caG/caC																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761287	59761287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	85	405	0	ENST00000259008.2:c.3120G>C	p.Lys1040Asn	p.K1040N	ENST00000259008	NM_032043.2	1040	aaG/aaC																																																																														
ALK	238	MSKCC	GRCh37	2	29519809	29519809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	94	450	1	ENST00000389048.3:c.1762G>A	p.Glu588Lys	p.E588K	ENST00000389048	NM_004304.4	588	Gaa/Aaa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39709872	39709872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	34	161	0	ENST00000361337.2:c.499G>A	p.Glu167Lys	p.E167K	ENST00000361337	NM_003286.2	167	Gaa/Aaa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44514674	44514674	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	75	377	0	ENST00000291552.4:c.483-1G>C		p.X161_splice	ENST00000291552	NM_006758.2	161																																																																															
PRKCI	5584	MSKCC	GRCh37	3	169953027	169953027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	88	289	0	ENST00000295797.4:c.111G>A	p.Met37Ile	p.M37I	ENST00000295797	NM_002740.5	37	atG/atA																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652243	36652250	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCAGGG	GCTCAGGG	-			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	110	481	0	ENST00000244741.5:c.366_373del	p.Ser123AlafsTer3	p.S123Afs*3	ENST00000244741	NM_000389.4	122	cGCTCAGGG/c																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004897	150004897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	75	303	0	ENST00000253339.5:c.1328C>T	p.Ser443Leu	p.S443L	ENST00000253339		443	tCa/tTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528159	157528159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	33	432	0	ENST00000346085.5:c.5884G>T	p.Asp1962Tyr	p.D1962Y	ENST00000346085	NM_020732.3	1962	Gat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	127	399	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986928	36986928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	222	552	0	ENST00000354822.5:c.761C>G	p.Ala254Gly	p.A254G	ENST00000354822	NM_001079668.2	254	gCg/gGg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640454	3640454	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369435228		P-0042269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	525	895	1	ENST00000294008.3:c.3185G>A	p.Arg1062His	p.R1062H	ENST00000294008	NM_032444.2	1062	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0042269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	448	639	2	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
STK11	6794	MSKCC	GRCh37	19	1207065	1207066	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0042269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	645	891	0	ENST00000326873.7:c.156_157del	p.Asp53ProfsTer109	p.D53Pfs*109	ENST00000326873	NM_000455.4	51	atGGgg/atgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0042274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	235	770	0	ENST00000275493.2:c.2314_2319dup	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609600	81609600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	97	607	0	ENST00000298171.2:c.1198C>A	p.Pro400Thr	p.P400T	ENST00000298171	NM_000369.2	400	Ccc/Acc																																																																														
INSR	3643	MSKCC	GRCh37	19	7142932	7142932	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs371294434		P-0042274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	283	1012	1	ENST00000302850.5:c.2437C>T	p.Arg813Ter	p.R813*	ENST00000302850	NM_000208.2	813	Cga/Tga																																																																														
CALR	811	MSKCC	GRCh37	19	13050031	13050031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	74	589	0	ENST00000316448.5:c.175G>T	p.Asp59Tyr	p.D59Y	ENST00000316448	NM_004343.3	59	Gac/Tac																																																																														
KDR	3791	MSKCC	GRCh37	4	55970990	55970990	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	88	628	1	ENST00000263923.4:c.1807T>A	p.Cys603Ser	p.C603S	ENST00000263923	NM_002253.2	603	Tgc/Agc																																																																														
ATRX	546	MSKCC	GRCh37	X	76855282	76855282	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	49	154	0	ENST00000373344.5:c.5705T>C	p.Phe1902Ser	p.F1902S	ENST00000373344	NM_000489.3	1902	tTt/tCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579545	7579545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	301	768	0	ENST00000269305.4:c.142del	p.Asp48ThrfsTer75	p.D48Tfs*75	ENST00000269305	NM_001126112.2	48	Gac/ac																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856433	111856433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1046057518		P-0042276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	19	177	1	ENST00000341259.2:c.484G>A	p.Ala162Thr	p.A162T	ENST00000341259	NM_005475.2	162	Gcc/Acc																																																																														
CBL	867	MSKCC	GRCh37	11	119169139	119169139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	43	491	0	ENST00000264033.4:c.2323G>A	p.Asp775Asn	p.D775N	ENST00000264033	NM_005188.3	775	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0042316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	87	395	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519986		P-0042316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	450	795	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	347	539	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478927	56478927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	379	674	0	ENST00000267101.3:c.383G>T	p.Ser128Ile	p.S128I	ENST00000267101	NM_001982.3	128	aGc/aTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52661288	52661288	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0042328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	213	326	0	ENST00000394830.3:c.1541+1G>C		p.X514_splice	ENST00000394830	NM_018313.4	514																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	194	294	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0042347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	142	482	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0042347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	62	207	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720637	89720659	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTTTTTTTTAGGACAAAATG	TTTTTTTTTTTTAGGACAAAATG	-			P-0042347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	159	111	0	ENST00000371953.3:c.802-11_813del		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
ATR	545	MSKCC	GRCh37	3	142184012	142184012	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	218	171	0	ENST00000350721.4:c.6968T>G	p.Ile2323Ser	p.I2323S	ENST00000350721	NM_001184.3	2323	aTc/aGc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115251235	115251235	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs758669528		P-0042373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	48	508	0	ENST00000369535.4:c.491G>T	p.Arg164Leu	p.R164L	ENST00000369535	NM_002524.4	164	cGc/cTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163784	47163785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	74	466	0	ENST00000409792.3:c.2341dup	p.Thr781AsnfsTer20	p.T781Nfs*20	ENST00000409792	NM_014159.6	781	acg/aAcg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436854	52436857	+	frameshift_variant	Frame_Shift_Del	DEL	CAGC	CAGC	-			P-0042373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	108	608	0	ENST00000460680.1:c.1921_1924del	p.Ala641ArgfsTer13	p.A641Rfs*13	ENST00000460680	NM_004656.3	641	GCTGag/ag																																																																														
HGF	3082	MSKCC	GRCh37	7	81374438	81374438	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0042373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	78	369	0	ENST00000222390.5:c.626-2A>G		p.X209_splice	ENST00000222390	NM_000601.4	209																																																																															
FGF3	2248	MSKCC	GRCh37	11	69633599	69633599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	12	115	0	ENST00000334134.2:c.103G>T	p.Val35Phe	p.V35F	ENST00000334134	NM_005247.2	35	Gtc/Ttc																																																																														
CDH1	999	MSKCC	GRCh37	16	68847307	68847307	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	30	508	0	ENST00000261769.5:c.1229A>T	p.Glu410Val	p.E410V	ENST00000261769	NM_004360.3	410	gAg/gTg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524617	176524617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	55	637	0	ENST00000292408.4:c.2349C>G	p.Ser783Arg	p.S783R	ENST00000292408	NM_213647.1	783	agC/agG																																																																														
MED12	9968	MSKCC	GRCh37	X	70357204	70357204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	37	252	0	ENST00000374080.3:c.5719C>G	p.Gln1907Glu	p.Q1907E	ENST00000374080		1907	Caa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	71	390	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0042377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	236	423	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0042377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	236	423	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	148	800	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	75	453	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0042377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	236	423	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
VHL	7428	MSKCC	GRCh37	3	10183771	10183771	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	160	589	0	ENST00000256474.2:c.240T>G	p.Ser80Arg	p.S80R	ENST00000256474	NM_000551.3	80	agT/agG																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463287	25463287	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761934754		P-0042396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	114	597	0	ENST00000264709.3:c.2206C>T	p.Arg736Cys	p.R736C	ENST00000264709	NM_175629.2	736	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0042396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	210	842	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45800097	45800097	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	174	704	0	ENST00000372115.3:c.123del	p.Asn42ThrfsTer35	p.N42Tfs*35	ENST00000372115	NM_001048171.1	41	aaG/aa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584552	52584552	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	36	733	0	ENST00000394830.3:c.4461del	p.Phe1487LeufsTer2	p.F1487Lfs*2	ENST00000394830	NM_018313.4	1487	ttT/tt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204864		P-0042476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	33	508	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266822	198266822	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	274	682	0	ENST00000335508.6:c.2110A>T	p.Ile704Phe	p.I704F	ENST00000335508	NM_012433.2	704	Atc/Ttc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0042484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	93	564	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0042484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	209	425	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882025		P-0042484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	292	786	0	ENST00000269305.4:c.646G>C	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ctg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578218	7578218	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060501198		P-0042484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	284	783	0	ENST00000269305.4:c.631A>G	p.Thr211Ala	p.T211A	ENST00000269305	NM_001126112.2	211	Act/Gct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0042500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	757	720	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577599	7577599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	470	510	0	ENST00000269305.4:c.682G>C	p.Asp228His	p.D228H	ENST00000269305	NM_001126112.2	228	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579337	7579337	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs755238756		P-0042500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	659	640	0	ENST00000269305.4:c.350G>C	p.Gly117Ala	p.G117A	ENST00000269305	NM_001126112.2	117	gGg/gCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0042516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	297	831	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575035	64575035	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs886039416		P-0042516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	219	529	0	ENST00000337652.1:c.787C>T	p.Gln263Ter	p.Q263*	ENST00000337652	NM_130803.2	263	Cag/Tag																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	26	296	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	47	354	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	70	861	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129620	2129620	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878854092		P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	44	1060	2	ENST00000219476.3:c.3347C>T	p.Ala1116Val	p.A1116V	ENST00000219476	NM_000548.3	1116	gCt/gTt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129133	152129133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	44	921	0	ENST00000206249.3:c.86C>T	p.Pro29Leu	p.P29L	ENST00000206249	NM_000125.3	29	cCg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023919	27023919	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1438830885		P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	11	69	0	ENST00000324856.7:c.1025C>T	p.Ala342Val	p.A342V	ENST00000324856	NM_006015.4	342	gCg/gTg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633607	69633607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	10	109	0	ENST00000334134.2:c.95G>A	p.Arg32His	p.R32H	ENST00000334134	NM_005247.2	32	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0042546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	32	440	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0042546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	42	531	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0042584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	214	737	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	55	485	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0042603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	46	732	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866689	37866689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149210045		P-0042603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	325	845	0	ENST00000269571.5:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269571		286	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266028	41266605	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	GAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACAT	GAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACAT	-			P-0042603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	20	288	0	ENST00000349496.5:c.26_403del		p.X9_splice	ENST00000349496	NM_001904.3	9	GAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACAT/-																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592037	67592037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	57	279	0	ENST00000274335.5:c.1853A>G	p.His618Arg	p.H618R	ENST00000274335		618	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	40	565	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730882026		P-0042604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	101	799	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	25	477	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	40	492	0	ENST00000304494.5:c.188T>G	p.Leu63Arg	p.L63R	ENST00000304494	NM_000077.4	63	cTg/cGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	40	492	0	ENST00000304494.5:c.188T>G	p.Leu63Arg	p.L63R	ENST00000304494	NM_000077.4	63	cTg/cGg																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	112	414	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	97	656	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371524413		P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	305	918	0	ENST00000269305.4:c.467G>A	p.Arg156His	p.R156H	ENST00000269305	NM_001126112.2	156	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	203	597	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911607	134911607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1384145752		P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	100	511	0	ENST00000398015.3:c.2072G>A	p.Arg691Gln	p.R691Q	ENST00000398015	NM_004441.4	691	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943988	71943988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	53	749	2	ENST00000298229.2:c.1921C>T	p.Arg641Trp	p.R641W	ENST00000298229	NM_001567.3	641	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175330	112175331	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAGGCA			P-0042625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	36	242	0	ENST00000257430.4:c.4041_4047dup	p.Lys1350GlnfsTer6	p.K1350Qfs*6	ENST00000257430	NM_000038.5	1347	gcc/gCCAGGCAcc																																																																														
MYC	4609	MSKCC	GRCh37	8	128750956	128750956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	238	567	1	ENST00000377970.2:c.493G>A	p.Ala165Thr	p.A165T	ENST00000377970	NM_002467.4	165	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0042663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	297	640	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	90	379	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519733		P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	175	1042	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716095	243716095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	102	597	1	ENST00000263826.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000263826	NM_005465.4	367	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031893	10031893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	143	717	1	ENST00000330684.3:c.930C>A	p.Phe310Leu	p.F310L	ENST00000330684	NM_001134407.1	310	ttC/ttA																																																																														
ALK	238	MSKCC	GRCh37	2	29462662	29462662	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762395127		P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	364	928	0	ENST00000389048.3:c.2239G>A	p.Gly747Arg	p.G747R	ENST00000389048	NM_004304.4	747	Ggg/Agg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653792	89653792	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	249	332	0	ENST00000371953.3:c.92del	p.Asn31ThrfsTer23	p.N31Tfs*23	ENST00000371953	NM_000314.4	30	ccA/cc																																																																														
CDH1	999	MSKCC	GRCh37	16	68844229	68844229	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	212	648	1	ENST00000261769.5:c.817G>T	p.Glu273Ter	p.E273*	ENST00000261769	NM_004360.3	273	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	107	533	0				ENST00000310581	NM_198253.2																																																																																
TMPRSS2	7113	MSKCC	GRCh37	21	42851169	42851169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775960588		P-0042682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	40	424	1	ENST00000398585.3:c.724G>A	p.Gly242Arg	p.G242R	ENST00000398585	NM_001135099.1	242	Gga/Aga																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145736889	145736949	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGAAGCGTCGGTCCTGCCCGTACACCTGGGCCGGGTAGCAGGGGCTTCCTACGGTGGAG	CCAGAAGCGTCGGTCCTGCCCGTACACCTGGGCCGGGTAGCAGGGGCTTCCTACGGTGGAG	-			P-0042682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	89	1087	0	ENST00000428558.2:c.3503-11_3552del		p.X1168_splice	ENST00000428558	NM_004260.3	1168																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	31	393	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441613	6441613	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	75	411	0	ENST00000356142.4:c.460A>C	p.Thr154Pro	p.T154P	ENST00000356142	NM_018890.3	154	Act/Cct																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101910068	101910068	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0042743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	26	185	0	ENST00000374994.4:c.1386+2T>G		p.X462_splice	ENST00000374994	NM_004612.2	462																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12028657	12028657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	146	376	0	ENST00000353533.5:c.860G>A	p.Arg287His	p.R287H	ENST00000353533	NM_003010.3	287	cGc/cAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115972	8115973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	106	289	0	ENST00000346208.3:c.1320dup	p.Ala441ArgfsTer66	p.A441Rfs*66	ENST00000346208		440	acc/aCcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	209	601	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0042810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	252	925	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640238	3640238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1433489753		P-0042810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	315	1403	1	ENST00000294008.3:c.3401C>T	p.Ser1134Leu	p.S1134L	ENST00000294008	NM_032444.2	1134	tCg/tTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970993	21970993	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	235	898	0	ENST00000304494.5:c.365del	p.Gly122AlafsTer24	p.G122Afs*24	ENST00000304494	NM_000077.4	122	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970993	21970993	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	235	898	0	ENST00000304494.5:c.365del	p.Gly122AlafsTer24	p.G122Afs*24	ENST00000304494	NM_000077.4	122	gGc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0042830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	155	661	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	65	360	0	ENST00000268712.3:c.1573dup	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0042830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	11	38	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775638	9775638	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057524823		P-0042830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	131	706	0	ENST00000377346.4:c.181A>G	p.Met61Val	p.M61V	ENST00000377346	NM_005026.3	61	Atg/Gtg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119595259	119595267	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTTAGTCC	CCTTAGTCC	G			P-0042830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	29	250	0	ENST00000316626.5:c.902_909+1delinsC		p.X301_splice	ENST00000316626		301																																																																															
TP53	7157	MSKCC	GRCh37	17	7577576	7577578	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0042873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	232	487	1	ENST00000269305.4:c.703_705del	p.Asn235del	p.N235del	ENST00000269305	NM_001126112.2	235	AAC/-																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487152	56487152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	212	410	0	ENST00000267101.3:c.1298T>C	p.Met433Thr	p.M433T	ENST00000267101	NM_001982.3	433	aTg/aCg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86642491	86642491	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0042873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	61	251	0	ENST00000274376.6:c.1052G>A	p.Trp351Ter	p.W351*	ENST00000274376	NM_002890.2	351	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0042877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	208	527	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0042877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	93	321	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs770248150		P-0042877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	337	203	0	ENST00000256078.4:c.351A>C	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaC																																																																														
TSC2	7249	MSKCC	GRCh37	16	2120460	2120460	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	170	600	1	ENST00000219476.3:c.1721del	p.Lys574SerfsTer124	p.K574Sfs*124	ENST00000219476	NM_000548.3	574	Aag/ag																																																																														
ATR	545	MSKCC	GRCh37	3	142272843	142272843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	91	129	0	ENST00000350721.4:c.2356C>A	p.Leu786Ile	p.L786I	ENST00000350721	NM_001184.3	786	Cta/Ata																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672006	30672006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	244	764	0	ENST00000376406.3:c.4954C>A	p.Pro1652Thr	p.P1652T	ENST00000376406	NM_014641.2	1652	Cca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	151	333	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0042914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	405	500	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0042957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	72	607	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0042957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	77	357	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106898	27106898	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	59	635	0	ENST00000324856.7:c.6509T>G	p.Leu2170Arg	p.L2170R	ENST00000324856	NM_006015.4	2170	cTg/cGg																																																																														
ALK	238	MSKCC	GRCh37	2	29551215	29551215	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs777414641		P-0042957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	50	526	4	ENST00000389048.3:c.1414+1G>A		p.X472_splice	ENST00000389048	NM_004304.4	472																																																																															
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs587780073		P-0042958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	36	589	0	ENST00000269305.4:c.701A>C	p.Tyr234Ser	p.Y234S	ENST00000269305	NM_001126112.2	234	tAc/tCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	20	455	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs756897237		P-0042998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	10	33	0	ENST00000331920.6:c.49_51del	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317070	11317070	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766996808		P-0042998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	252	616	2	ENST00000361445.4:c.424G>A	p.Ala142Thr	p.A142T	ENST00000361445	NM_004958.3	142	Gct/Act																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374890	45374890	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	411	620	0	ENST00000262160.6:c.953A>T	p.Asn318Ile	p.N318I	ENST00000262160	NM_005901.5	318	aAt/aTt																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874169	155874169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	191	706	0	ENST00000368323.3:c.362T>C	p.Val121Ala	p.V121A	ENST00000368323	NM_006912.5	121	gTc/gCc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88651892	88651892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	125	462	0	ENST00000372037.3:c.239G>A	p.Gly80Glu	p.G80E	ENST00000372037	NM_004329.2	80	gGa/gAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895641	28895641	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1475572191		P-0042998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	440	607	0	ENST00000282397.4:c.3133C>T	p.Arg1045Trp	p.R1045W	ENST00000282397	NM_002019.4	1045	Cgg/Tgg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99472846	99472846	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778465734		P-0042998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			633	196	600	0	ENST00000268035.6:c.2842G>A	p.Val948Met	p.V948M	ENST00000268035	NM_000875.3	948	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577151	7577152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	398	598	1	ENST00000269305.4:c.786dup	p.Asn263Ter	p.N263*	ENST00000269305	NM_001126112.2	262	-/T																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332874	152332874	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs755020320		P-0042998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	144	441	0	ENST00000206249.3:c.1180C>A	p.Arg394Ser	p.R394S	ENST00000206249	NM_000125.3	394	Cgc/Agc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431455	121431553	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCAGAAGAACCCTAGCAAGGAGGAGCGAGAGACGCTAGTGGAGGAGTGCAATAGGTACAACGGCGGGCGGGAAACAGTGCTGGTTTGGTCTGGGCTGC	GGCAGAAGAACCCTAGCAAGGAGGAGCGAGAGACGCTAGTGGAGGAGTGCAATAGGTACAACGGCGGGCGGGAAACAGTGCTGGTTTGGTCTGGGCTGC	-			P-0042998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			917	67	815	0	ENST00000257555.6:c.663_713+48del		p.X221_splice	ENST00000257555		221																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0043021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	28	460	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711840	89711901	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCAATTTGGCTTCTCTTTTTTTTCTGTCCACCAGGGAGTAACTATTCCCAGTCAGAGGCGC	TTCAATTTGGCTTCTCTTTTTTTTCTGTCCACCAGGGAGTAACTATTCCCAGTCAGAGGCGC	-			P-0043021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	14	307	0	ENST00000371953.3:c.493-34_520del		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0043075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	176	711	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105673	27105673	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	173	496	0	ENST00000324856.7:c.5287del	p.Glu1763LysfsTer7	p.E1763Kfs*7	ENST00000324856	NM_006015.4	1762	Ggg/gg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392883	118392883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	83	440	0	ENST00000534358.1:c.11915A>G	p.Asn3972Ser	p.N3972S	ENST00000534358	NM_005933.3	3972	aAc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	165	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0043092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	383	667	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0043092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	214	352	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0043092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	214	352	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0043092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	214	352	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31472258	31472258	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	271	546	0	ENST00000344624.3:c.2153A>C	p.Glu718Ala	p.E718A	ENST00000344624		718	gAg/gCg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966783	44966783	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0043092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	233	520	0	ENST00000377967.4:c.4005+2T>G		p.X1335_splice	ENST00000377967	NM_021140.2	1335																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38632024	38632024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	72	642	0	ENST00000299084.4:c.510C>A	p.Ser170Arg	p.S170R	ENST00000299084	NM_152594.2	170	agC/agA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578411	+	inframe_deletion	In_Frame_Del	DEL	TGGTGGGGGCAGCGCCTC	TGGTGGGGGCAGCGCCTC	-			P-0043108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	532	698	0	ENST00000269305.4:c.519_536del	p.Arg174_His179del	p.R174_H179del	ENST00000269305	NM_001126112.2	173	gtGAGGCGCTGCCCCCACCAt/gtt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672704	30672704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	592	944	1	ENST00000376406.3:c.4256C>A	p.Ser1419Tyr	p.S1419Y	ENST00000376406	NM_014641.2	1419	tCc/tAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851684	134851684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373293977		P-0043113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	50	594	1	ENST00000398015.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000398015	NM_004441.4	364	Cgg/Tgg																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140154	50140154	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1374610832		P-0043113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	93	720	0	ENST00000246792.3:c.271G>A	p.Gly91Arg	p.G91R	ENST00000246792	NM_006270.3	91	Ggg/Agg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39285837	39285837	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	65	549	0	ENST00000402219.2:c.322G>C	p.Glu108Gln	p.E108Q	ENST00000402219	NM_005633.3	108	Gaa/Caa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057894	27057894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	82	705	0	ENST00000324856.7:c.1605del	p.Ser536ProfsTer83	p.S536Pfs*83	ENST00000324856	NM_006015.4	534	taC/ta																																																																														
CBL	867	MSKCC	GRCh37	11	119158629	119158629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	68	581	0	ENST00000264033.4:c.2009C>T	p.Ala670Val	p.A670V	ENST00000264033	NM_005188.3	670	gCc/gTc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643252	38643252	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	45	365	0	ENST00000299084.4:c.722A>G	p.Asp241Gly	p.D241G	ENST00000299084	NM_152594.2	241	gAt/gGt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482863	67482863	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	96	544	0	ENST00000327367.4:c.1267A>G	p.Ser423Gly	p.S423G	ENST00000327367	NM_005902.3	423	Agt/Ggt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658840	3658840	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs767940346		P-0043113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	77	689	0	ENST00000294008.3:c.126G>C	p.Gln42His	p.Q42H	ENST00000294008	NM_032444.2	42	caG/caC																																																																														
FANCA	2175	MSKCC	GRCh37	16	89806286	89806420	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCTTATAAACTTACTTAGCAAGGAACCTCAAGGAGGGCTCGTTCTTAACCATTTGCAAGATGCCTCTGAAAAGAGCGGCCCTCCGCATTTGTGCCTCAGCAGCGTGTTTCTTACCACTCTCTGTCAACTGAAA	GAGCTTATAAACTTACTTAGCAAGGAACCTCAAGGAGGGCTCGTTCTTAACCATTTGCAAGATGCCTCTGAAAAGAGCGGCCCTCCGCATTTGTGCCTCAGCAGCGTGTTTCTTACCACTCTCTGTCAACTGAAA	-			P-0043113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	53	200	0	ENST00000389301.3:c.3916_3934+116del		p.X1306_splice	ENST00000389301	NM_000135.2	1306																																																																															
RAD50	10111	MSKCC	GRCh37	5	131940530	131940530	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	34	384	0	ENST00000265335.6:c.2557A>T	p.Ile853Leu	p.I853L	ENST00000265335		853	Ata/Tta																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151917699	151917699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	38	303	0	ENST00000262189.6:c.3621G>T	p.Lys1207Asn	p.K1207N	ENST00000262189	NM_170606.2	1207	aaG/aaT																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259324	36259324	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs111527738		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	12	597	0	ENST00000300305.3:c.167T>C	p.Leu56Ser	p.L56S	ENST00000300305		56	tTg/tCg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	25	370	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	13	342	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	31	326	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	50	801	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	24	331	1	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631917	90631918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs780120934		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	78	684	0	ENST00000330062.3:c.435dup	p.Thr146AspfsTer126	p.T146Dfs*126	ENST00000330062	NM_002168.2	145	-/G																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	30	863	7	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ATM	472	MSKCC	GRCh37	11	108123616	108123616	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	14	316	0	ENST00000278616.4:c.1880del	p.Phe627SerfsTer22	p.F627Sfs*22	ENST00000278616	NM_000051.3	625	aaT/aa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	17	400	0	ENST00000262367.5:c.3250dup	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	31	836	5	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
CARM1	10498	MSKCC	GRCh37	19	10982557	10982557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	23	222	0	ENST00000327064.4:c.179T>C	p.Val60Ala	p.V60A	ENST00000327064	NM_199141.1	60	gTg/gCg																																																																														
SESN3	143686	MSKCC	GRCh37	11	94908685	94908685	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764427282		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	38	524	0	ENST00000536441.1:c.1369C>T	p.Arg457Trp	p.R457W	ENST00000536441	NM_144665.3	457	Cgg/Tgg																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518485	69518485	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1005963395		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	27	542	1	ENST00000294312.3:c.160G>A	p.Gly54Arg	p.G54R	ENST00000294312	NM_005117.2	54	Ggg/Agg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088748	27088748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769121528		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	30	638	1	ENST00000324856.7:c.2357G>A	p.Gly786Asp	p.G786D	ENST00000324856	NM_006015.4	786	gGc/gAc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599890	28599890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	23	589	0	ENST00000253063.3:c.772G>A	p.Val258Met	p.V258M	ENST00000253063	NM_031459.4	258	Gtg/Atg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243777025	243777025	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	42	464	0	ENST00000263826.5:c.644T>C	p.Phe215Ser	p.F215S	ENST00000263826	NM_005465.4	215	tTc/tCc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244965	123244965	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1259590587		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	31	647	0	ENST00000358487.5:c.2139del	p.Phe713LeufsTer4	p.F713Lfs*4	ENST00000358487	NM_000141.4	713	ttT/tt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435910	49435910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1352702003		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	39	860	2	ENST00000301067.7:c.6071C>T	p.Ala2024Val	p.A2024V	ENST00000301067	NM_003482.3	2024	gCc/gTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133219300	133219300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556887600		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	25	612	0	ENST00000320574.5:c.4744C>T	p.Pro1582Ser	p.P1582S	ENST00000320574	NM_006231.2	1582	Ccc/Tcc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557461	21557461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	21	549	0	ENST00000382592.4:c.2384A>G	p.Asp795Gly	p.D795G	ENST00000382592	NM_014572.2	795	gAt/gGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3824676	3824676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	36	553	0	ENST00000262367.5:c.2177C>T	p.Pro726Leu	p.P726L	ENST00000262367	NM_004380.2	726	cCc/cTc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676240	37676240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1436155086		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	43	564	0	ENST00000447079.4:c.2995C>T	p.His999Tyr	p.H999Y	ENST00000447079	NM_015083.1	999	Cac/Tac																																																																														
EP300	2033	MSKCC	GRCh37	22	41537140	41537140	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1405828471		P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	23	557	0	ENST00000263253.7:c.1967A>G	p.Asn656Ser	p.N656S	ENST00000263253	NM_001429.3	656	aAc/aGc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645715	12645715	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	22	281	0	ENST00000251849.4:c.754T>G	p.Ser252Ala	p.S252A	ENST00000251849	NM_002880.3	252	Tcc/Gcc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204697	128204697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	32	785	0	ENST00000341105.2:c.744del	p.Tyr249ThrfsTer77	p.Y249Tfs*77	ENST00000341105	NM_032638.4	248	acC/ac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807645	1807645	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	66	895	0	ENST00000260795.2:c.1814T>C	p.Met605Thr	p.M605T	ENST00000260795		605	aTg/aCg																																																																														
APC	324	MSKCC	GRCh37	5	112174282	112174282	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	10	357	0	ENST00000257430.4:c.2991T>A	p.Tyr997Ter	p.Y997*	ENST00000257430	NM_000038.5	997	taT/taA																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045942	26045942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	19	491	1	ENST00000540144.1:c.304G>A	p.Val102Met	p.V102M	ENST00000540144	NM_003531.2	102	Gtg/Atg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931919	39931920	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	51	419	0	ENST00000378444.4:c.2679dup	p.Leu894ValfsTer23	p.L894Vfs*23	ENST00000378444	NM_001123385.1	893	-/G																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	72	557	3	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0043172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	13	295	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38282115	38282115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	74	826	0	ENST00000425967.3:c.941C>T	p.Pro314Leu	p.P314L	ENST00000425967	NM_001174067.1	314	cCg/cTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259397	11259397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	53	560	0	ENST00000361445.4:c.4171C>G	p.Arg1391Gly	p.R1391G	ENST00000361445	NM_004958.3	1391	Cga/Gga																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	31	355	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188153	11188153	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	52	540	0	ENST00000361445.4:c.5941A>G	p.Lys1981Glu	p.K1981E	ENST00000361445	NM_004958.3	1981	Aag/Gag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057973	27057973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	60	572	1	ENST00000324856.7:c.1681C>T	p.Gln561Ter	p.Q561*	ENST00000324856	NM_006015.4	561	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653790	89653790	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	55	350	0	ENST00000371953.3:c.89del	p.Pro30GlnfsTer24	p.P30Qfs*24	ENST00000371953	NM_000314.4	30	Cca/ca																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650715	67650715	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	69	614	0	ENST00000264010.4:c.1020T>A	p.His340Gln	p.H340Q	ENST00000264010	NM_006565.3	340	caT/caA																																																																														
MSH3	4437	MSKCC	GRCh37	5	80160711	80160711	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs777247211		P-0043172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	81	672	0	ENST00000265081.6:c.3080A>G	p.Asn1027Ser	p.N1027S	ENST00000265081	NM_002439.4	1027	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	137	688	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913250		P-0043173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	186	367	0	ENST00000369535.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000369535	NM_002524.4	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0043173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	108	563	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	86	362	3	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																														
APC	324	MSKCC	GRCh37	5	112175015	112175015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	37	174	0	ENST00000257430.4:c.3724C>T	p.Gln1242Ter	p.Q1242*	ENST00000257430	NM_000038.5	1242	Cag/Tag																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045705	26045705	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs745690555		P-0043173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	56	279	0	ENST00000540144.1:c.67A>G	p.Thr23Ala	p.T23A	ENST00000540144	NM_003531.2	23	Act/Gct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0043223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	144	430	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0043223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	130	548	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913386		P-0043223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	139	372	0	ENST00000304494.5:c.341C>A	p.Pro114His	p.P114H	ENST00000304494	NM_000077.4	114	cCc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913386		P-0043223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	139	372	0	ENST00000304494.5:c.341C>A	p.Pro114His	p.P114H	ENST00000304494	NM_000077.4	114	cCc/cAc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30302732	30302732	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1012001581		P-0043223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	44	341	0	ENST00000322652.5:c.823G>A	p.Asp275Asn	p.D275N	ENST00000322652	NM_015355.2	275	Gat/Aat																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436414	52436414	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	175	655	1	ENST00000460680.1:c.2080C>T	p.Gln694Ter	p.Q694*	ENST00000460680	NM_004656.3	694	Cag/Tag																																																																														
VHL	7428	MSKCC	GRCh37	3	10188196	10188196	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs869025637		P-0043232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	160	569	0	ENST00000256474.2:c.341-2A>G		p.X114_splice	ENST00000256474	NM_000551.3	114																																																																															
RHEB	6009	MSKCC	GRCh37	7	151188043	151188043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	187	421	0	ENST00000262187.5:c.110C>T	p.Pro37Leu	p.P37L	ENST00000262187	NM_005614.3	37	cCa/cTa																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0043246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	189	545	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285231	212285231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	128	468	0	ENST00000342788.4:c.3070G>T	p.Val1024Phe	p.V1024F	ENST00000342788	NM_005235.2	1024	Gtc/Ttc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244148	153244148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	142	428	0	ENST00000281708.4:c.2009G>T	p.Gly670Val	p.G670V	ENST00000281708	NM_033632.3	670	gGa/gTa																																																																														
APC	324	MSKCC	GRCh37	5	112175909	112175909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	65	234	0	ENST00000257430.4:c.4618G>T	p.Glu1540Ter	p.E1540*	ENST00000257430	NM_000038.5	1540	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0043323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	519	1026	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061412	38061412	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1310740071		P-0043323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	431	702	0	ENST00000250448.2:c.577C>G	p.Leu193Val	p.L193V	ENST00000250448	NM_004496.3	193	Ctg/Gtg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246021919	246021919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763591857		P-0043323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	197	949	0	ENST00000388985.4:c.955C>T	p.Arg319Trp	p.R319W	ENST00000388985		319	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991666	72991666	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	290	604	1	ENST00000268489.5:c.2379del	p.Ser794ArgfsTer30	p.S794Rfs*30	ENST00000268489	NM_006885.3	793	ccC/cc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673104	30673104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	423	769	0	ENST00000376406.3:c.3856C>G	p.Pro1286Ala	p.P1286A	ENST00000376406	NM_014641.2	1286	Ccc/Gcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273266	55273266	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1431	187	797	0	ENST00000275493.2:c.3589T>G	p.Tyr1197Asp	p.Y1197D	ENST00000275493	NM_005228.3	1197	Tac/Gac																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982420	201982420	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	298	775	0	ENST00000359651.3:c.799A>T	p.Lys267Ter	p.K267*	ENST00000359651		267	Aag/Tag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21619864	21619864	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1235573411		P-0043351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	91	494	1	ENST00000382592.4:c.302G>A	p.Arg101Gln	p.R101Q	ENST00000382592	NM_014572.2	101	cGg/cAg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662047	227662047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1301402217		P-0043351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	223	676	0	ENST00000305123.5:c.1408G>A	p.Gly470Ser	p.G470S	ENST00000305123	NM_005544.2	470	Ggc/Agc																																																																														
EP300	2033	MSKCC	GRCh37	22	41537145	41537145	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs973317775		P-0043351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	561	506	0	ENST00000263253.7:c.1972C>G	p.Leu658Val	p.L658V	ENST00000263253	NM_001429.3	658	Cta/Gta																																																																														
BCL6	604	MSKCC	GRCh37	3	187444528	187444528	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1438511659		P-0043351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	490	649	1	ENST00000232014.4:c.1699G>A	p.Val567Ile	p.V567I	ENST00000232014	NM_001130845.1	567	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112176018	112176018	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	265	380	0	ENST00000257430.4:c.4728del	p.Glu1577AsnfsTer73	p.E1577Nfs*73	ENST00000257430	NM_000038.5	1576	gAa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0043352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	27	638	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs768922431		P-0043352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	45	462	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022935	31022935	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	50	558	0	ENST00000375687.4:c.2421del	p.Pro808LeufsTer10	p.P808Lfs*10	ENST00000375687	NM_015338.5	807	gTt/gt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	80	322	0				ENST00000310581	NM_198253.2																																																																																
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0043366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	241	610	1	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431649	6431649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	226	550	0	ENST00000356142.4:c.202C>T	p.Arg68Cys	p.R68C	ENST00000356142	NM_018890.3	68	Cgc/Tgc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658237	18658238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	142	482	0	ENST00000266497.5:c.3047dup	p.Tyr1017LeufsTer17	p.Y1017Lfs*17	ENST00000266497		1014	-/T																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798824	135798824	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	116	360	0	ENST00000298552.3:c.419T>G	p.Leu140Arg	p.L140R	ENST00000298552	NM_001162426.1	140	cTa/cGa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985501	2985501	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	65	507	0	ENST00000396946.4:c.310A>C	p.Lys104Gln	p.K104Q	ENST00000396946	NM_032415.4	104	Aaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0043404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	28	364	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579861	7579861	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs876658627		P-0043404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	98	657	0	ENST00000269305.4:c.52del	p.Thr18HisfsTer26	p.T18Hfs*26	ENST00000269305	NM_001126112.2	18	Aca/ca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288969	212288969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148791072		P-0043404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	38	454	0	ENST00000342788.4:c.2777C>T	p.Thr926Met	p.T926M	ENST00000342788	NM_005235.2	926	aCg/aTg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133523	55133523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142492533		P-0043404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	67	488	1	ENST00000257290.5:c.827C>T	p.Thr276Met	p.T276M	ENST00000257290	NM_006206.4	276	aCg/aTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs786204873		P-0043404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	28	252	0	ENST00000371953.3:c.801+1G>A		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188964	11188964	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753081675		P-0043404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	71	488	0	ENST00000361445.4:c.5759A>G	p.Asn1920Ser	p.N1920S	ENST00000361445	NM_004958.3	1920	aAt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	152	363	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631837	90631837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	166	499	0	ENST00000330062.3:c.516G>T	p.Arg172Ser	p.R172S	ENST00000330062	NM_002168.2	172	agG/agT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464434	120464434	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	71	301	0	ENST00000256646.2:c.5214-2A>G		p.X1738_splice	ENST00000256646	NM_024408.3	1738																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692833	89692833	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	31	196	0	ENST00000371953.3:c.317A>G	p.Glu106Gly	p.E106G	ENST00000371953	NM_000314.4	106	gAa/gGa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610028	81610028	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	177	334	0	ENST00000298171.2:c.1626G>C	p.Met542Ile	p.M542I	ENST00000298171	NM_000369.2	542	atG/atC																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275742	41275742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	140	475	0	ENST00000349496.5:c.1637A>G	p.Asp546Gly	p.D546G	ENST00000349496	NM_001904.3	546	gAt/gGt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468294	50468294	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs971487743		P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	120	551	1	ENST00000331340.3:c.1529C>T	p.Thr510Met	p.T510M	ENST00000331340	NM_006060.4	510	aCg/aTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039350	47039351	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0043410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	350	692	0	ENST00000329236.7:c.743_744del	p.Val248AlafsTer54	p.V248Afs*54	ENST00000329236	NM_001204466.1	248	GTg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0043425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	286	666	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458223	12458223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	76	441	0	ENST00000287820.6:c.840G>A	p.Met280Ile	p.M280I	ENST00000287820	NM_015869.4	280	atG/atA																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120512359	120512359	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	81	395	0	ENST00000256646.2:c.883T>G	p.Cys295Gly	p.C295G	ENST00000256646	NM_024408.3	295	Tgc/Ggc																																																																														
APC	324	MSKCC	GRCh37	5	112157616	112157617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTG			P-0043425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	18	365	0	ENST00000257430.4:c.1339_1342dup	p.Pro448LeufsTer13	p.P448Lfs*13	ENST00000257430	NM_000038.5	446	atc/aTCTGtc																																																																														
APC	324	MSKCC	GRCh37	5	112176647	112176821	+	frameshift_variant	Frame_Shift_Del	DEL	AGGACACGTGTAAGAAAAAATGCAGACTCAAAAAATAATTTAAATGCTGAGAGAGTTTTCTCAGACAACAAAGATTCAAAGAAACAGAATTTGAAAAATAATTCCAAGGTCTTCAATGATAAGCTCCCAAATAATGAAGATAGAGTCAGAGGAAGTTTTGCTTTTGATTCACCTC	AGGACACGTGTAAGAAAAAATGCAGACTCAAAAAATAATTTAAATGCTGAGAGAGTTTTCTCAGACAACAAAGATTCAAAGAAACAGAATTTGAAAAATAATTCCAAGGTCTTCAATGATAAGCTCCCAAATAATGAAGATAGAGTCAGAGGAAGTTTTGCTTTTGATTCACCTC	-			P-0043425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	60	271	0	ENST00000257430.4:c.5357_5531del	p.Arg1786IlefsTer19	p.R1786Ifs*19	ENST00000257430	NM_000038.5	1786	AGGACACGTGTAAGAAAAAATGCAGACTCAAAAAATAATTTAAATGCTGAGAGAGTTTTCTCAGACAACAAAGATTCAAAGAAACAGAATTTGAAAAATAATTCCAAGGTCTTCAATGATAAGCTCCCAAATAATGAAGATAGAGTCAGAGGAAGTTTTGCTTTTGATTCACCTCat/at																																																																														
MTOR	2475	MSKCC	GRCh37	1	11181408	11181410	+	missense_variant	Missense_Mutation	ONP	GTC	GTC	ATA			P-0043425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	108	637	0	ENST00000361445.4:c.6826_6828delinsTAT	p.Asp2276Tyr	p.D2276Y	ENST00000361445	NM_004958.3	2276	GAC/TAT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	169	649	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245522	153245522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	90	351	0	ENST00000281708.4:c.1669G>A	p.Gly557Arg	p.G557R	ENST00000281708	NM_033632.3	557	Gga/Aga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044510	47044510	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	103	624	0	ENST00000329236.7:c.1773C>G	p.Phe591Leu	p.F591L	ENST00000329236	NM_001204466.1	591	ttC/ttG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0043490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	23	707	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131691026		P-0043515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	298	740	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0043515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	211	275	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984374	201984377	+	frameshift_variant	Frame_Shift_Del	DEL	GGCC	GGCC	-			P-0043515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	266	599	0	ENST00000359651.3:c.1042_1045del	p.Arg348AspfsTer98	p.R348Dfs*98	ENST00000359651		347	GGCCgg/gg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77051695	77051695	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145870074		P-0043515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	173	396	2	ENST00000356341.3:c.1112G>A	p.Arg371His	p.R371H	ENST00000356341	NM_002576.4	371	cGt/cAt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	58	305	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	87	408	7	ENST00000342505.4:c.425del	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	117	502	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	110	377	2	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612209	1612209	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs915880927		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	74	384	0	ENST00000344749.5:c.1810C>T	p.Arg604Ter	p.R604*	ENST00000344749	NM_001136139.2	604	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245720	46245720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	94	381	0	ENST00000334344.6:c.3814C>T	p.Arg1272Ter	p.R1272*	ENST00000334344	NM_152641.2	1272	Cga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508835	106508835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	94	442	0	ENST00000359195.3:c.829C>T	p.Arg277Trp	p.R277W	ENST00000359195	NM_002649.2	277	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs757302188		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	96	522	3	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																																																														
AXL	558	MSKCC	GRCh37	19	41749573	41749573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144824336		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	149	574	0	ENST00000301178.4:c.1498G>A	p.Val500Met	p.V500M	ENST00000301178	NM_021913.4	500	Gtg/Atg																																																																														
LATS1	9113	MSKCC	GRCh37	6	149982977	149982977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	47	396	0	ENST00000253339.5:c.3281C>T	p.Pro1094Leu	p.P1094L	ENST00000253339		1094	cCg/cTg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519971		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	91	423	0	ENST00000347630.2:c.260A>C	p.Tyr87Ser	p.Y87S	ENST00000347630	NM_001007230.1	87	tAc/tCc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106333	27106333	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201604768		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	147	509	0	ENST00000324856.7:c.5944G>A	p.Val1982Ile	p.V1982I	ENST00000324856	NM_006015.4	1982	Gtc/Atc																																																																														
WT1	7490	MSKCC	GRCh37	11	32449577	32449577	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501253		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	147	586	3	ENST00000332351.3:c.797del	p.Pro266ArgfsTer20	p.P266Rfs*20	ENST00000332351	NM_024426.4	266	cCg/cg																																																																														
BTK	695	MSKCC	GRCh37	X	100630173	100630173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141488935		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	93	213	1	ENST00000308731.7:c.100G>A	p.Val34Met	p.V34M	ENST00000308731	NM_000061.2	34	Gtg/Atg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78914339	78914339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147686617		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	152	564	0	ENST00000306801.3:c.2963G>A	p.Arg988Gln	p.R988Q	ENST00000306801	NM_020761.2	988	cGg/cAg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655248	45655248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533193731		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	137	565	0	ENST00000407780.3:c.604G>A	p.Val202Met	p.V202M	ENST00000407780	NM_001283052.1	202	Gtg/Atg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572041	64572041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	153	583	0	ENST00000337652.1:c.1613G>A	p.Ser538Asn	p.S538N	ENST00000337652	NM_130803.2	538	aGc/aAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49439750	49439750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200119692		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	119	473	0	ENST00000301067.7:c.4694C>T	p.Ala1565Val	p.A1565V	ENST00000301067	NM_003482.3	1565	gCg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11101967	11101967	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779161503		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	145	576	1	ENST00000344626.4:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000344626	NM_003072.3	463	Gag/Aag																																																																														
TET2	54790	MSKCC	GRCh37	4	106155594	106155594	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	84	322	0	ENST00000380013.4:c.499del	p.Ser167GlnfsTer16	p.S167Qfs*16	ENST00000380013	NM_001127208.2	165	agT/ag																																																																														
MSH3	4437	MSKCC	GRCh37	5	79961007	79961007	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	82	426	0	ENST00000265081.6:c.408del	p.Lys136AsnfsTer2	p.K136Nfs*2	ENST00000265081	NM_002439.4	135	gAa/ga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480411	89480411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	87	271	0	ENST00000336596.2:c.2248C>T	p.Arg750Trp	p.R750W	ENST00000336596	NM_005233.5	750	Cgg/Tgg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023445	31023445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	88	426	0	ENST00000375687.4:c.2930A>C	p.Gln977Pro	p.Q977P	ENST00000375687	NM_015338.5	977	cAg/cCg																																																																														
ATRX	546	MSKCC	GRCh37	X	76829787	76829787	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057517948		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	40	234	0	ENST00000373344.5:c.6254G>A	p.Arg2085His	p.R2085H	ENST00000373344	NM_000489.3	2085	cGt/cAt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672089	88672089	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	64	218	0	ENST00000372037.3:c.623A>T	p.Asp208Val	p.D208V	ENST00000372037	NM_004329.2	208	gAc/gTc																																																																														
WT1	7490	MSKCC	GRCh37	11	32413587	32413587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	82	355	0	ENST00000332351.3:c.1363del	p.Thr455LeufsTer12	p.T455Lfs*12	ENST00000332351	NM_024426.4	455	Act/ct																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129428	64129428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	128	564	0	ENST00000334205.4:c.860C>A	p.Ala287Glu	p.A287E	ENST00000334205	NM_003942.2	287	gCg/gAg																																																																														
YAP1	10413	MSKCC	GRCh37	11	102098217	102098217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	94	370	0	ENST00000282441.5:c.1181G>A	p.Arg394Gln	p.R394Q	ENST00000282441	NM_001130145.2	394	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445949	49445949	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	193	818	1	ENST00000301067.7:c.1517del	p.Pro506HisfsTer424	p.P506Hfs*424	ENST00000301067	NM_003482.3	506	cCa/ca																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489093	56489093	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1200363001		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	42	441	0	ENST00000267101.3:c.1912G>A	p.Gly638Ser	p.G638S	ENST00000267101	NM_001982.3	638	Ggc/Agc																																																																														
POLE	5426	MSKCC	GRCh37	12	133250262	133250262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	117	507	1	ENST00000320574.5:c.1258G>T	p.Gly420Cys	p.G420C	ENST00000320574	NM_006231.2	420	Ggc/Tgc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121876	2121876	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876658578		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	130	588	1	ENST00000219476.3:c.2038C>T	p.Arg680Trp	p.R680W	ENST00000219476	NM_000548.3	680	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827670	72827670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	123	491	0	ENST00000268489.5:c.8911C>G	p.Pro2971Ala	p.P2971A	ENST00000268489	NM_006885.3	2971	Ccc/Gcc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244170	5244170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	151	655	0	ENST00000357368.4:c.1312C>T	p.Leu438Phe	p.L438F	ENST00000357368	NM_002850.3	438	Ctc/Ttc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10283821	10283821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	100	414	0	ENST00000340748.4:c.665C>A	p.Pro222His	p.P222H	ENST00000340748		222	cCt/cAt																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19258538	19258538	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	143	652	0	ENST00000162023.5:c.362del	p.Gly121ValfsTer102	p.G121Vfs*102	ENST00000162023		121	gGt/gt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47635617	47635617	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750970		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	99	438	0	ENST00000233146.2:c.289C>T	p.Gln97Ter	p.Q97*	ENST00000233146	NM_000251.2	97	Cag/Tag																																																																														
CASP8	841	MSKCC	GRCh37	2	202141668	202141668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	60	354	1	ENST00000358485.4:c.956G>T	p.Arg319Met	p.R319M	ENST00000358485	NM_001080125.1	319	aGg/aTg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866343	42866343	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266959483		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	142	591	0	ENST00000398585.3:c.289G>A	p.Ala97Thr	p.A97T	ENST00000398585	NM_001135099.1	97	Gct/Act																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38967304	38967304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	67	236	1	ENST00000357387.3:c.1177G>T	p.Ala393Ser	p.A393S	ENST00000357387	NM_152756.3	393	Gca/Tca																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720871	176720871	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1260544167		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	96	438	0	ENST00000439151.2:c.6502G>A	p.Gly2168Arg	p.G2168R	ENST00000439151	NM_022455.4	2168	Ggg/Agg																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839783	27839783	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	118	448	0	ENST00000328488.2:c.311T>C	p.Leu104Pro	p.L104P	ENST00000328488	NM_003533.2	104	cTa/cCa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68930109	68930109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	131	367	0	ENST00000288368.4:c.170C>T	p.Ala57Val	p.A57V	ENST00000288368	NM_024870.2	57	gCa/gTa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248069	110248069	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867964623		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	37	405	0	ENST00000374672.4:c.1403C>T	p.Ser468Leu	p.S468L	ENST00000374672	NM_004235.4	468	tCg/tTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399469	139399469	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	175	617	0	ENST00000277541.6:c.4674del	p.Leu1559TrpfsTer21	p.L1559Wfs*21	ENST00000277541	NM_017617.3	1558	ggG/gg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411846	63411846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	202	370	0	ENST00000330258.3:c.1321C>T	p.Pro441Ser	p.P441S	ENST00000330258	NM_152424.3	441	Cca/Tca																																																																														
MED12	9968	MSKCC	GRCh37	X	70344033	70344033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	123	307	0	ENST00000374080.3:c.1769G>A	p.Arg590Gln	p.R590Q	ENST00000374080		590	cGg/cAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76777854	76777854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782342279		P-0043520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	63	216	2	ENST00000373344.5:c.6862C>T	p.Arg2288Cys	p.R2288C	ENST00000373344	NM_000489.3	2288	Cgt/Tgt																																																																														
EP300	2033	MSKCC	GRCh37	22	41574829	41574829	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs768061933		P-0043583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	373	449	0	ENST00000263253.7:c.7114A>G	p.Met2372Val	p.M2372V	ENST00000263253	NM_001429.3	2372	Atg/Gtg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69009261	69009261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	185	96	0	ENST00000288368.4:c.2378A>G	p.Asp793Gly	p.D793G	ENST00000288368	NM_024870.2	793	gAc/gGc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216554	7216567	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTAGCATGTTCC	GGTTAGCATGTTCC	T			P-0043583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	273	355	0	ENST00000380728.2:c.768_781delinsA	p.Met256IlefsTer85	p.M256Ifs*85	ENST00000380728		256	atGGAACATGCTAACCag/atAag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	141	701	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	67	442	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	98	736	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317111	87317111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	47	467	0	ENST00000277120.3:c.250G>A	p.Glu84Lys	p.E84K	ENST00000277120		84	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545585	106545585	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376453517		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	25	387	0	ENST00000359195.3:c.3062G>A	p.Arg1021His	p.R1021H	ENST00000359195	NM_002649.2	1021	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	55	736	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261434	16261434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	84	668	1	ENST00000375759.3:c.8699C>T	p.Ser2900Leu	p.S2900L	ENST00000375759	NM_015001.2	2900	tCg/tTg																																																																														
YAP1	10413	MSKCC	GRCh37	11	102080254	102080254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193100333		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	98	350	0	ENST00000282441.5:c.991C>T	p.Arg331Trp	p.R331W	ENST00000282441	NM_001130145.2	331	Cgg/Tgg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37058999	37058999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs63751194		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	35	390	1	ENST00000231790.2:c.793C>T	p.Arg265Cys	p.R265C	ENST00000231790	NM_000249.3	265	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692782	89692782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	37	264	0	ENST00000371953.3:c.266C>A	p.Pro89His	p.P89H	ENST00000371953	NM_000314.4	89	cCt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	38	193	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	85	348	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
MED12	9968	MSKCC	GRCh37	X	70342421	70342421	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771266719		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	97	644	0	ENST00000374080.3:c.1312C>T	p.Arg438Cys	p.R438C	ENST00000374080		438	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242457	55242457	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759256622		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	88	454	0	ENST00000275493.2:c.2227G>A	p.Ala743Thr	p.A743T	ENST00000275493	NM_005228.3	743	Gct/Act																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	10	367	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PAK1	5058	MSKCC	GRCh37	11	77090381	77090381	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369339512		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	64	507	0	ENST00000356341.3:c.344C>T	p.Ser115Leu	p.S115L	ENST00000356341	NM_002576.4	115	tCg/tTg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681353	88681353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140592056		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	48	132	0	ENST00000372037.3:c.1243G>A	p.Glu415Lys	p.E415K	ENST00000372037	NM_004329.2	415	Gaa/Aaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612175	189612175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	110	657	0	ENST00000264731.3:c.1927C>T	p.Arg643Ter	p.R643*	ENST00000264731	NM_003722.4	643	Cga/Tga																																																																														
INSR	3643	MSKCC	GRCh37	19	7168073	7168073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754537233		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	203	495	2	ENST00000302850.5:c.1516C>T	p.Arg506Trp	p.R506W	ENST00000302850	NM_000208.2	506	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	45	390	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
PAK7	0	MSKCC	GRCh37	20	9546847	9546847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	69	627	0	ENST00000353224.5:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000353224	NM_177990.2	392	tCg/tTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706977	117706977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764959275		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	105	607	0	ENST00000368508.3:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000368508	NM_002944.2	725	Gac/Aac																																																																														
INSR	3643	MSKCC	GRCh37	19	7267385	7267385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1189720431		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	206	519	0	ENST00000302850.5:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000302850	NM_000208.2	208	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764400127		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	90	519	0	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133225939	133225939	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs754411056		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	103	886	0	ENST00000320574.5:c.3958C>T	p.Arg1320Ter	p.R1320*	ENST00000320574	NM_006231.2	1320	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	105	682	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285609	38285609	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs762665767		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	77	326	0	ENST00000425967.3:c.544G>A	p.Val182Ile	p.V182I	ENST00000425967	NM_001174067.1	182	Gta/Ata																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720870	89720870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	87	199	0	ENST00000371953.3:c.1021T>G	p.Phe341Val	p.F341V	ENST00000371953	NM_000314.4	341	Ttt/Gtt																																																																														
ATM	472	MSKCC	GRCh37	11	108143551	108143551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201780199		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	26	308	0	ENST00000278616.4:c.3256C>T	p.Arg1086Cys	p.R1086C	ENST00000278616	NM_000051.3	1086	Cgc/Tgc																																																																														
XIAP	331	MSKCC	GRCh37	X	123025128	123025128	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	81	75	0	ENST00000355640.3:c.1018A>C	p.Asn340His	p.N340H	ENST00000355640		340	Aac/Cac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132438	11132438	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794284		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	145	744	1	ENST00000344626.4:c.2654G>A	p.Arg885His	p.R885H	ENST00000344626	NM_003072.3	885	cGc/cAc																																																																														
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	120	493	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467646	66467646	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	66	348	0	ENST00000273854.3:c.623del	p.Lys208ArgfsTer60	p.K208Rfs*60	ENST00000273854	NM_004439.5	208	aAg/ag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	44	311	0	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030613	48030613	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779617676		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	162	542	1	ENST00000234420.5:c.3227G>A	p.Arg1076His	p.R1076H	ENST00000234420	NM_000179.2	1076	cGc/cAc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636143	28636143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371663652		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	106	576	0	ENST00000241453.7:c.229G>A	p.Glu77Lys	p.E77K	ENST00000241453	NM_004119.2	77	Gaa/Aaa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25498386	25498386	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1274769751		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	42	588	0	ENST00000264709.3:c.475G>A	p.Glu159Lys	p.E159K	ENST00000264709	NM_175629.2	159	Gaa/Aaa																																																																														
SMO	6608	MSKCC	GRCh37	7	128845086	128845086	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761395599		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	206	788	1	ENST00000249373.3:c.580G>A	p.Glu194Lys	p.E194K	ENST00000249373	NM_005631.4	194	Gaa/Aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1060503077		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	12	25	0	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	46	198	0	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	92	478	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
RET	5979	MSKCC	GRCh37	10	43601972	43601972	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774829203		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	157	841	2	ENST00000355710.3:c.1016C>T	p.Ser339Leu	p.S339L	ENST00000355710	NM_020975.4	339	tCg/tTg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395776	45395776	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	53	372	0	ENST00000262160.6:c.358C>T	p.Arg120Ter	p.R120*	ENST00000262160	NM_005901.5	120	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100871	27100871	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761500441		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	107	528	1	ENST00000324856.7:c.4153G>A	p.Glu1385Lys	p.E1385K	ENST00000324856	NM_006015.4	1385	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520000	106520000	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs759433704		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	67	234	0	ENST00000359195.3:c.2428C>A	p.Pro810Thr	p.P810T	ENST00000359195	NM_002649.2	810	Cca/Aca																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72890221	72890221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752101890		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	74	475	0	ENST00000325599.8:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000325599	NM_018130.2	154	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521103	187521103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183364307		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	48	475	0	ENST00000441802.2:c.12052G>A	p.Ala4018Thr	p.A4018T	ENST00000441802	NM_005245.3	4018	Gcc/Acc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59886057	59886057	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759031349		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	54	486	0	ENST00000259008.2:c.689C>T	p.Ser230Leu	p.S230L	ENST00000259008	NM_032043.2	230	tCg/tTg																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50481162	50481162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	92	448	0	ENST00000394963.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000394963	NM_003076.4	183	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108172385	108172385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs764389018		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	70	296	0	ENST00000278616.4:c.5188C>T	p.Arg1730Ter	p.R1730*	ENST00000278616	NM_000051.3	1730	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	48919244	48919244	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913296		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	12	29	0	ENST00000267163.4:c.409G>T	p.Glu137Ter	p.E137*	ENST00000267163	NM_000321.2	137	Gaa/Taa																																																																														
MITF	4286	MSKCC	GRCh37	3	69990402	69990402	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765051386		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	31	210	0	ENST00000352241.4:c.682G>A	p.Asp228Asn	p.D228N	ENST00000352241	NM_198159.2	228	Gat/Aat																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99442709	99442709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	176	540	0	ENST00000268035.6:c.1106A>G	p.Asn369Ser	p.N369S	ENST00000268035	NM_000875.3	369	aAc/aGc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351098	89351098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140370885		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	111	730	3	ENST00000301030.4:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000301030	NM_001256183.1	618	Gct/Act																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420308	88420308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367985043		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	74	552	0	ENST00000360948.2:c.2378G>A	p.Arg793Gln	p.R793Q	ENST00000360948	NM_001012338.2	793	cGa/cAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9523285	9523285	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767541766		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	133	610	0	ENST00000353224.5:c.1952C>T	p.Ala651Val	p.A651V	ENST00000353224	NM_177990.2	651	gCg/gTg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027998	48027998	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757653982		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	30	333	0	ENST00000234420.5:c.2876G>A	p.Arg959His	p.R959H	ENST00000234420	NM_000179.2	959	cGc/cAc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652411	206652411	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781909564		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	284	733	1	ENST00000367120.3:c.1118C>T	p.Thr373Met	p.T373M	ENST00000367120	NM_014002.3	373	aCg/aTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535283	66535283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547670481		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	83	655	2	ENST00000273854.3:c.178G>A	p.Glu60Lys	p.E60K	ENST00000273854	NM_004439.5	60	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	29450509	29450509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774004991		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	262	786	0	ENST00000389048.3:c.2845G>A	p.Glu949Lys	p.E949K	ENST00000389048	NM_004304.4	949	Gaa/Aaa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40497584	40497584	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774724351		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	253	642	1	ENST00000264657.5:c.365C>T	p.Ala122Val	p.A122V	ENST00000264657	NM_139276.2	122	gCg/gTg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	114	475	1	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027751	48027751	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	35	279	0	ENST00000234420.5:c.2629G>T	p.Glu877Ter	p.E877*	ENST00000234420	NM_000179.2	877	Gaa/Taa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056376	180056376	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	92	742	0	ENST00000261937.6:c.868G>T	p.Glu290Ter	p.E290*	ENST00000261937	NM_182925.4	290	Gaa/Taa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915943	127915943	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781486938		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	54	448	0	ENST00000373547.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000373547	NM_002721.4	180	Gaa/Aaa																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	154	538	1	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
STK11	6794	MSKCC	GRCh37	19	1218483	1218483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775595174		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	178	560	0	ENST00000326873.7:c.358G>A	p.Glu120Lys	p.E120K	ENST00000326873	NM_000455.4	120	Gaa/Aaa																																																																														
SYK	6850	MSKCC	GRCh37	9	93606304	93606304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	151	736	0	ENST00000375746.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000375746	NM_001174167.1	42	Cgc/Tgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123788	11123788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1064795105		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	79	589	1	ENST00000344626.4:c.2438C>T	p.Ser813Leu	p.S813L	ENST00000344626	NM_003072.3	813	tCa/tTa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11313967	11313967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	151	751	1	ENST00000361445.4:c.769C>T	p.Arg257Trp	p.R257W	ENST00000361445	NM_004958.3	257	Cgg/Tgg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645069	67645069	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	73	646	0	ENST00000264010.4:c.334G>T	p.Glu112Ter	p.E112*	ENST00000264010	NM_006565.3	112	Gaa/Taa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47677876	47677876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	135	577	1	ENST00000347630.2:c.989C>T	p.Ser330Leu	p.S330L	ENST00000347630	NM_001007230.1	330	tCg/tTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48916843	48916843	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	15	149	0	ENST00000267163.4:c.373G>T	p.Glu125Ter	p.E125*	ENST00000267163	NM_000321.2	125	Gaa/Taa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188854	32188854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1183058401		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	108	829	2	ENST00000375023.3:c.700C>T	p.Arg234Trp	p.R234W	ENST00000375023	NM_004557.3	234	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112176873	112176873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	30	277	0	ENST00000257430.4:c.5582C>A	p.Ser1861Tyr	p.S1861Y	ENST00000257430	NM_000038.5	1861	tCt/tAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828772	3828772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	204	623	1	ENST00000262367.5:c.1870C>T	p.Arg624Cys	p.R624C	ENST00000262367	NM_004380.2	624	Cgc/Tgc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170840	99170840	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1442257080		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	78	659	1	ENST00000074304.5:c.1469C>T	p.Ser490Leu	p.S490L	ENST00000074304	NM_001134224.1	490	tCg/tTg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843724	156843724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	152	931	0	ENST00000524377.1:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000524377	NM_002529.3	384	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332853	153332853	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751626529		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	101	519	1	ENST00000281708.4:c.103C>T	p.Arg35Cys	p.R35C	ENST00000281708	NM_033632.3	35	Cgt/Tgt																																																																														
TET1	80312	MSKCC	GRCh37	10	70405958	70405958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370887665		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	47	585	0	ENST00000373644.4:c.3472C>T	p.Arg1158Trp	p.R1158W	ENST00000373644	NM_030625.2	1158	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112173495	112173495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147655929		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	36	334	0	ENST00000257430.4:c.2204C>T	p.Ala735Val	p.A735V	ENST00000257430	NM_000038.5	735	gCg/gTg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59821931	59821931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764803896		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	26	257	0	ENST00000259008.2:c.2119C>T	p.Arg707Cys	p.R707C	ENST00000259008	NM_032043.2	707	Cgt/Tgt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310506	65310506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	105	646	0	ENST00000342505.4:c.2182G>A	p.Asp728Asn	p.D728N	ENST00000342505	NM_002227.2	728	Gac/Aac																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228613019	228613019	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773567566		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	98	430	0	ENST00000366696.1:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000366696	NM_003493.2	3	cGa/cAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213800	66213800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	35	380	0	ENST00000273854.3:c.2630G>A	p.Arg877Lys	p.R877K	ENST00000273854	NM_004439.5	877	aGa/aAa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675571	30675571	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772732783		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	138	860	0	ENST00000376406.3:c.2785G>A	p.Asp929Asn	p.D929N	ENST00000376406	NM_014641.2	929	Gat/Aat																																																																														
ATRX	546	MSKCC	GRCh37	X	76939351	76939351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	22	434	1	ENST00000373344.5:c.1397G>T	p.Arg466Ile	p.R466I	ENST00000373344	NM_000489.3	466	aGa/aTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306568	41306568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	127	691	1	ENST00000373198.4:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000373198	NM_133170.3	364	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103716	47103716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs981018402		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	75	533	0	ENST00000409792.3:c.6230G>A	p.Arg2077Gln	p.R2077Q	ENST00000409792	NM_014159.6	2077	cGa/cAa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915939	127915939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	52	458	1	ENST00000373547.4:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000373547	NM_002721.4	181	cGg/cAg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740264	162740264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756149068		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	77	406	0	ENST00000367921.3:c.1466G>A	p.Arg489Gln	p.R489Q	ENST00000367921	NM_006182.2	489	cGa/cAa																																																																														
FH	2271	MSKCC	GRCh37	1	241661199	241661199	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201115573		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	83	577	0	ENST00000366560.3:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000366560	NM_000143.3	488	Gaa/Aaa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	14	381	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201816	66201816	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556854839		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	150	471	0	ENST00000273854.3:c.2686C>T	p.Arg896Cys	p.R896C	ENST00000273854	NM_004439.5	896	Cgt/Tgt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751901	57751901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148954251		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	62	522	0	ENST00000274289.3:c.1336C>T	p.Arg446Trp	p.R446W	ENST00000274289	NM_006622.3	446	Cgg/Tgg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672842	86672842	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	58	234	0	ENST00000274376.6:c.2329G>T	p.Glu777Ter	p.E777*	ENST00000274376	NM_002890.2	777	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32931937	32931937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	21	212	0	ENST00000380152.3:c.7676C>A	p.Ser2559Tyr	p.S2559Y	ENST00000380152		2559	tCt/tAt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185161405	185161405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	59	395	0	ENST00000265026.3:c.832C>T	p.Arg278Cys	p.R278C	ENST00000265026	NM_004721.4	278	Cgt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230405	46230405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1391481708		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	30	230	0	ENST00000334344.6:c.739C>T	p.Arg247Cys	p.R247C	ENST00000334344	NM_152641.2	247	Cgt/Tgt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502609	149502609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	68	420	0	ENST00000261799.4:c.2179C>T	p.Pro727Ser	p.P727S	ENST00000261799	NM_002609.3	727	Ccc/Tcc																																																																														
WT1	7490	MSKCC	GRCh37	11	32413577	32413577	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1037084691		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	107	480	0	ENST00000332351.3:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000332351	NM_024426.4	458	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29562982	29562982	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1306237220		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	71	356	0	ENST00000358273.4:c.3917G>A	p.Arg1306Gln	p.R1306Q	ENST00000358273	NM_001042492.2	1306	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686796	117686796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759586931		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	57	415	0	ENST00000368508.3:c.2921C>T	p.Ala974Val	p.A974V	ENST00000368508	NM_002944.2	974	gCg/gTg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553011	106553011	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs955184509		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	91	732	1	ENST00000369096.4:c.976C>T	p.Arg326Cys	p.R326C	ENST00000369096	NM_001198.3	326	Cgc/Tgc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206653437	206653437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782340929		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	195	652	1	ENST00000367120.3:c.1321C>T	p.Arg441Trp	p.R441W	ENST00000367120	NM_014002.3	441	Cgg/Tgg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98232137	98232137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1382474804		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	71	424	0	ENST00000331920.6:c.1805G>A	p.Arg602Gln	p.R602Q	ENST00000331920	NM_000264.3	602	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644754	67644754	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779609208		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	96	546	0	ENST00000264010.4:c.19G>A	p.Glu7Lys	p.E7K	ENST00000264010	NM_006565.3	7	Gaa/Aaa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028618	12028618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	45	353	1	ENST00000353533.5:c.821G>T	p.Arg274Ile	p.R274I	ENST00000353533	NM_003010.3	274	aGa/aTa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	43	697	1	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81946225	81946225	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1325870340		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	142	719	0	ENST00000359376.3:c.1958G>A	p.Arg653His	p.R653H	ENST00000359376	NM_002661.3	653	cGc/cAc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965761	25965761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377352572		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	95	684	0	ENST00000435504.4:c.3445C>T	p.Arg1149Cys	p.R1149C	ENST00000435504		1149	Cgt/Tgt																																																																														
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779811318		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	65	541	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42839785	42839785	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773001010		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	75	535	2	ENST00000398585.3:c.1454C>T	p.Ser485Leu	p.S485L	ENST00000398585	NM_001135099.1	485	tCg/tTg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729984	41729984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	139	695	0	ENST00000242208.4:c.545C>T	p.Pro182Leu	p.P182L	ENST00000242208	NM_002192.2	182	cCg/cTg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53250046	53250046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	234	669	1	ENST00000375401.3:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000375401	NM_004187.3	68	cGa/cAa																																																																														
BTK	695	MSKCC	GRCh37	X	100617551	100617551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	51	523	0	ENST00000308731.7:c.518G>A	p.Gly173Glu	p.G173E	ENST00000308731	NM_000061.2	173	gGa/gAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674234	86674234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	69	337	1	ENST00000274376.6:c.2366G>A	p.Arg789Gln	p.R789Q	ENST00000274376	NM_002890.2	789	cGa/cAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410553	63410553	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	233	822	0	ENST00000330258.3:c.2614T>C	p.Tyr872His	p.Y872H	ENST00000330258	NM_152424.3	872	Tac/Cac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276723	15276723	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1031506714		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	90	776	1	ENST00000263388.2:c.5542C>T	p.Arg1848Cys	p.R1848C	ENST00000263388	NM_000435.2	1848	Cgt/Tgt																																																																														
AR	367	MSKCC	GRCh37	X	66765025	66765025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1335991486		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	168	781	0	ENST00000374690.3:c.37C>T	p.Arg13Trp	p.R13W	ENST00000374690	NM_000044.3	13	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829617	72829617	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	85	623	0	ENST00000268489.5:c.6964C>T	p.Arg2322Ter	p.R2322*	ENST00000268489	NM_006885.3	2322	Cga/Tga																																																																														
EED	8726	MSKCC	GRCh37	11	85989557	85989557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	36	356	1	ENST00000263360.6:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000263360	NM_003797.3	439	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108121669	108121669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750280306		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	36	395	0	ENST00000278616.4:c.1477C>T	p.Arg493Cys	p.R493C	ENST00000278616	NM_000051.3	493	Cgt/Tgt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638912	176638912	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111638717		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	106	662	0	ENST00000439151.2:c.3512G>A	p.Arg1171His	p.R1171H	ENST00000439151	NM_022455.4	1171	cGt/cAt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231134	98231134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1311707136		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	83	677	0	ENST00000331920.6:c.2149G>A	p.Asp717Asn	p.D717N	ENST00000331920	NM_000264.3	717	Gac/Aac																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750454	57750454	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	35	382	0	ENST00000274289.3:c.2014C>T	p.Arg672Ter	p.R672*	ENST00000274289	NM_006622.3	672	Cga/Tga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563383	21563383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	105	993	0	ENST00000382592.4:c.536C>T	p.Ser179Leu	p.S179L	ENST00000382592	NM_014572.2	179	tCg/tTg																																																																														
ALK	238	MSKCC	GRCh37	2	29543637	29543637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	101	663	0	ENST00000389048.3:c.1526C>T	p.Ala509Val	p.A509V	ENST00000389048	NM_004304.4	509	gCc/gTc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067243	37067243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs63750430		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	152	478	0	ENST00000231790.2:c.1154G>A	p.Arg385His	p.R385H	ENST00000231790	NM_000249.3	385	cGt/cAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471050	8471050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	45	315	0	ENST00000356435.5:c.3449C>A	p.Ser1150Tyr	p.S1150Y	ENST00000356435		1150	tCt/tAt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255694	16255694	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376676096		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	37	507	0	ENST00000375759.3:c.2959C>T	p.Arg987Cys	p.R987C	ENST00000375759	NM_015001.2	987	Cgc/Tgc																																																																														
YES1	7525	MSKCC	GRCh37	18	732915	732915	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542568142		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	89	540	0	ENST00000314574.4:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000314574	NM_005433.3	448	Cgg/Tgg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622495	158622495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1316254232		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	66	461	1	ENST00000263640.3:c.1004G>A	p.Arg335Gln	p.R335Q	ENST00000263640	NM_001105.4	335	cGa/cAa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003277	143003277	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369778611		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	69	522	1	ENST00000262992.4:c.2549C>T	p.Ser850Leu	p.S850L	ENST00000262992	NM_001101669.1	850	tCg/tTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302801	15302801	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756520455		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	106	805	0	ENST00000263388.2:c.649G>A	p.Asp217Asn	p.D217N	ENST00000263388	NM_000435.2	217	Gac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227938	55227938	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	24	344	0	ENST00000275493.2:c.1405T>G	p.Leu469Val	p.L469V	ENST00000275493	NM_005228.3	469	Ttg/Gtg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119007	3119007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769503200		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	110	801	3	ENST00000078429.4:c.691G>A	p.Ala231Thr	p.A231T	ENST00000078429	NM_002067.2	231	Gcc/Acc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138453531	138453531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372119491		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	67	215	0	ENST00000289153.2:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000289153	NM_006219.2	306	cGa/cAa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349353	73349353	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1026175478		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	56	229	0	ENST00000377767.4:c.983G>A	p.Arg328Gln	p.R328Q	ENST00000377767	NM_014953.3	328	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832265	72832265	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267604632		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	60	501	1	ENST00000268489.5:c.4316G>A	p.Arg1439Gln	p.R1439Q	ENST00000268489	NM_006885.3	1439	cGa/cAa																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108548	8108548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	82	707	0	ENST00000585124.1:c.847C>T	p.Arg283Cys	p.R283C	ENST00000585124	NM_004217.3	283	Cgc/Tgc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650845	37650845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	110	651	0	ENST00000447079.4:c.2317C>T	p.Arg773Cys	p.R773C	ENST00000447079	NM_015083.1	773	Cgt/Tgt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740837	58740837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200809297		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	123	550	0	ENST00000305921.3:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000305921	NM_003620.3	581	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112173303	112173303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	17	172	0	ENST00000257430.4:c.2012C>A	p.Ser671Tyr	p.S671Y	ENST00000257430	NM_000038.5	671	tCt/tAt																																																																														
ATM	472	MSKCC	GRCh37	11	108160347	108160347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	12	94	0	ENST00000278616.4:c.4255C>A	p.Leu1419Ile	p.L1419I	ENST00000278616	NM_000051.3	1419	Ctt/Att																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622579	158622579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766547414		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	65	562	0	ENST00000263640.3:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000263640	NM_001105.4	307	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647532	117647532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	73	301	0	ENST00000368508.3:c.5412G>T	p.Lys1804Asn	p.K1804N	ENST00000368508	NM_002944.2	1804	aaG/aaT																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736480	85736480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	48	242	0	ENST00000370580.1:c.167C>A	p.Ser56Tyr	p.S56Y	ENST00000370580	NM_003921.4	56	tCt/tAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692978	89692978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	143	388	0	ENST00000371953.3:c.462C>A	p.Phe154Leu	p.F154L	ENST00000371953	NM_000314.4	154	ttC/ttA																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026290	48026290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147737737		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	37	386	0	ENST00000234420.5:c.1168G>A	p.Asp390Asn	p.D390N	ENST00000234420	NM_000179.2	390	Gat/Aat																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58701094	58701094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	84	518	0	ENST00000305921.3:c.685G>A	p.Glu229Lys	p.E229K	ENST00000305921	NM_003620.3	229	Gaa/Aaa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061825	38061825	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1019690230		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	286	904	0	ENST00000250448.2:c.164C>T	p.Thr55Met	p.T55M	ENST00000250448	NM_004496.3	55	aCg/aTg																																																																														
EED	8726	MSKCC	GRCh37	11	85979575	85979575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	53	288	0	ENST00000263360.6:c.938G>A	p.Arg313Gln	p.R313Q	ENST00000263360	NM_003797.3	313	cGa/cAa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905974	50905974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746087148		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	223	822	0	ENST00000440232.2:c.946G>A	p.Asp316Asn	p.D316N	ENST00000440232	NM_002691.3	316	Gat/Aat																																																																														
CUL3	8452	MSKCC	GRCh37	2	225346713	225346713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	114	430	0	ENST00000264414.4:c.1925G>A	p.Arg642Gln	p.R642Q	ENST00000264414	NM_003590.4	642	cGg/cAg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572092	64572092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	139	711	2	ENST00000337652.1:c.1562G>A	p.Arg521Gln	p.R521Q	ENST00000337652	NM_130803.2	521	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653842	89653842	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057518425		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	48	105	0	ENST00000371953.3:c.140G>A	p.Arg47Lys	p.R47K	ENST00000371953	NM_000314.4	47	aGg/aAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715350	117715350	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1466068877		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	47	201	0	ENST00000368508.3:c.1139G>T	p.Arg380Ile	p.R380I	ENST00000368508	NM_002944.2	380	aGa/aTa																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588241	69588241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533842802		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	37	477	0	ENST00000168712.1:c.457G>A	p.Asp153Asn	p.D153N	ENST00000168712	NM_002007.2	153	Gat/Aat																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741604	17741604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866359886		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	61	279	0	ENST00000250003.3:c.275G>A	p.Arg92His	p.R92H	ENST00000250003	NM_002478.4	92	cGc/cAc																																																																														
FANCC	2176	MSKCC	GRCh37	9	97912349	97912349	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182879858		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	76	468	0	ENST00000289081.3:c.542C>T	p.Ala181Val	p.A181V	ENST00000289081	NM_000136.2	181	gCg/gTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57857515	57857515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	125	826	0	ENST00000228682.2:c.41G>A	p.Gly14Asp	p.G14D	ENST00000228682	NM_005269.2	14	gGc/gAc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321280	1321280	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763471203		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	104	468	2	ENST00000381566.1:c.475G>A	p.Glu159Lys	p.E159K	ENST00000381566		159	Gag/Aag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023223	31023223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754790367		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	100	717	0	ENST00000375687.4:c.2708C>T	p.Ser903Leu	p.S903L	ENST00000375687	NM_015338.5	903	tCg/tTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120506251	120506251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781827529		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	109	402	0	ENST00000256646.2:c.1861C>T	p.Arg621Cys	p.R621C	ENST00000256646	NM_024408.3	621	Cgc/Tgc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819695	81819695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs537204469		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	153	629	1	ENST00000359376.3:c.101G>A	p.Arg34His	p.R34H	ENST00000359376	NM_002661.3	34	cGc/cAc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181431	185181431	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377513650		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	57	503	0	ENST00000265026.3:c.1372C>T	p.Arg458Cys	p.R458C	ENST00000265026	NM_004721.4	458	Cgc/Tgc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029554	14029554	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147105770		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	46	375	0	ENST00000311895.7:c.1765C>T	p.Arg589Trp	p.R589W	ENST00000311895	NM_005236.2	589	Cgg/Tgg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386401	31386401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	88	697	0	ENST00000328111.2:c.1626G>T	p.Trp542Cys	p.W542C	ENST00000328111	NM_006892.3	542	tgG/tgT																																																																														
BLM	641	MSKCC	GRCh37	15	91347446	91347446	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757088548		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	68	336	0	ENST00000355112.3:c.3608C>T	p.Ala1203Val	p.A1203V	ENST00000355112	NM_000057.2	1203	gCg/gTg																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114233	73114233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201957466		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	35	322	0	ENST00000356692.5:c.869G>A	p.Arg290His	p.R290H	ENST00000356692		290	cGt/cAt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670598	134670598	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs563780078		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	119	749	0	ENST00000398015.3:c.509G>A	p.Arg170Gln	p.R170Q	ENST00000398015	NM_004441.4	170	cGg/cAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039404	47039404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	159	769	0	ENST00000329236.7:c.796C>T	p.Arg266Cys	p.R266C	ENST00000329236	NM_001204466.1	266	Cgc/Tgc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931862	68931862	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200600940		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	137	543	0	ENST00000288368.4:c.292G>A	p.Glu98Lys	p.E98K	ENST00000288368	NM_024870.2	98	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55979561	55979561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	69	495	0	ENST00000263923.4:c.886G>A	p.Gly296Ser	p.G296S	ENST00000263923	NM_002253.2	296	Ggt/Agt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953115	81953115	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1336595726		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	45	329	1	ENST00000359376.3:c.2081G>A	p.Arg694His	p.R694H	ENST00000359376	NM_002661.3	694	cGc/cAc																																																																														
ATR	545	MSKCC	GRCh37	3	142280137	142280137	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs986166179		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	116	546	0	ENST00000350721.4:c.1297C>T	p.Arg433Cys	p.R433C	ENST00000350721	NM_001184.3	433	Cgt/Tgt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143114277	143114277	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76891221		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	53	344	0	ENST00000262992.4:c.1144C>T	p.Arg382Trp	p.R382W	ENST00000262992	NM_001101669.1	382	Cgg/Tgg																																																																														
ARAF	369	MSKCC	GRCh37	X	47430353	47430353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773486607		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	93	822	0	ENST00000377045.4:c.1628G>A	p.Arg543Gln	p.R543Q	ENST00000377045	NM_001654.4	543	cGg/cAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11293466	11293466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	152	548	1	ENST00000361445.4:c.2410G>A	p.Glu804Lys	p.E804K	ENST00000361445	NM_004958.3	804	Gaa/Aaa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984460	7984460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	86	790	3	ENST00000319144.4:c.398G>T	p.Arg133Ile	p.R133I	ENST00000319144	NM_001139.2	133	aGa/aTa																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997499	149997499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	33	303	0	ENST00000253339.5:c.2780A>G	p.Tyr927Cys	p.Y927C	ENST00000253339		927	tAc/tGc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199821	138199821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	191	564	2	ENST00000237289.4:c.1239G>T	p.Lys413Asn	p.K413N	ENST00000237289	NM_001270507.1	413	aaG/aaT																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180441	94180441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139461096		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	93	645	0	ENST00000323929.3:c.1727G>A	p.Arg576Gln	p.R576Q	ENST00000323929	NM_005591.3	576	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948079	178948079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	34	193	0	ENST00000263967.3:c.2851C>T	p.Arg951Cys	p.R951C	ENST00000263967	NM_006218.2	951	Cgt/Tgt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332884	65332884	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	52	149	0	ENST00000342505.4:c.655C>T	p.Arg219Ter	p.R219*	ENST00000342505	NM_002227.2	219	Cga/Tga																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63817051	63817051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	33	232	1	ENST00000279873.7:c.1022G>A	p.Arg341Gln	p.R341Q	ENST00000279873	NM_032199.2	341	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29550566	29550566	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	18	144	0	ENST00000358273.4:c.1826A>T	p.Lys609Ile	p.K609I	ENST00000358273	NM_001042492.2	609	aAa/aTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29553610	29553610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1350468182		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	34	330	0	ENST00000358273.4:c.2159G>A	p.Arg720Gln	p.R720Q	ENST00000358273	NM_001042492.2	720	cGg/cAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11303222	11303222	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747412972		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	227	648	1	ENST00000361445.4:c.1361G>A	p.Arg454His	p.R454H	ENST00000361445	NM_004958.3	454	cGc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518921	187518921	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs748249672		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	80	506	0	ENST00000441802.2:c.12283G>T	p.Asp4095Tyr	p.D4095Y	ENST00000441802	NM_005245.3	4095	Gat/Tat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127414	55127414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501504		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	128	594	0	ENST00000257290.5:c.202G>A	p.Asp68Asn	p.D68N	ENST00000257290	NM_006206.4	68	Gat/Aat																																																																														
TET1	80312	MSKCC	GRCh37	10	70406163	70406163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773912826		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	59	579	0	ENST00000373644.4:c.3677C>T	p.Thr1226Met	p.T1226M	ENST00000373644	NM_030625.2	1226	aCg/aTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341251	89341251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	69	507	0	ENST00000301030.4:c.7684G>A	p.Glu2562Lys	p.E2562K	ENST00000301030	NM_001256183.1	2562	Gag/Aag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123276929	123276929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200204947		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	59	420	1	ENST00000358487.5:c.988C>T	p.Arg330Trp	p.R330W	ENST00000358487	NM_000141.4	330	Cgg/Tgg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280032	66280032	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	17	276	0	ENST00000273854.3:c.1657C>T	p.Arg553Ter	p.R553*	ENST00000273854	NM_004439.5	553	Cga/Tga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532616	63532616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767111161		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	146	860	0	ENST00000307078.5:c.1963G>A	p.Glu655Lys	p.E655K	ENST00000307078	NM_004655.3	655	Gaa/Aaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25964903	25964903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561088610		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	52	394	0	ENST00000435504.4:c.4303C>T	p.Arg1435Trp	p.R1435W	ENST00000435504		1435	Cgg/Tgg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876188	35876188	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536561203		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	57	520	0	ENST00000303115.3:c.980C>T	p.Thr327Met	p.T327M	ENST00000303115	NM_002185.3	327	aCg/aTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931826	68931826	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs759461290		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	77	426	0	ENST00000288368.4:c.256G>T	p.Glu86Ter	p.E86*	ENST00000288368	NM_024870.2	86	Gaa/Taa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31468149	31468149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	94	533	0	ENST00000344624.3:c.2263G>A	p.Asp755Asn	p.D755N	ENST00000344624		755	Gat/Aat																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115266570	115266570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	140	629	0	ENST00000438362.2:c.1945C>T	p.Arg649Cys	p.R649C	ENST00000438362	NM_001242891.1	649	Cgc/Tgc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103525656	103525656	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	45	382	0	ENST00000355739.4:c.2927C>A	p.Ser976Tyr	p.S976Y	ENST00000355739	NM_000123.3	976	tCt/tAt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028639	12028639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	50	434	0	ENST00000353533.5:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000353533	NM_003010.3	281	cGa/cAa																																																																														
VHL	7428	MSKCC	GRCh37	3	10191526	10191526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	182	573	0	ENST00000256474.2:c.519G>T	p.Glu173Asp	p.E173D	ENST00000256474	NM_000551.3	173	gaG/gaT																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260151	149260151	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1307297959		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	57	503	1	ENST00000360632.3:c.742C>T	p.Arg248Ter	p.R248*	ENST00000360632	NM_015472.4	248	Cga/Tga																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162945	38162945	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185811622		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	158	506	0	ENST00000317025.8:c.2261C>T	p.Ser754Leu	p.S754L	ENST00000317025	NM_023034.1	754	tCg/tTg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128246829	128246829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1389464216		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	58	687	0	ENST00000265960.3:c.1100C>T	p.Ser367Leu	p.S367L	ENST00000265960	NM_001006617.1	367	tCg/tTg																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68352674	68352674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199981178		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	18	197	0	ENST00000487270.1:c.541C>T	p.Arg181Trp	p.R181W	ENST00000487270	NM_133509.3	181	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175486	112175486	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1424719678		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	116	362	0	ENST00000257430.4:c.4195C>T	p.Arg1399Cys	p.R1399C	ENST00000257430	NM_000038.5	1399	Cgt/Tgt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054649	5054649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373174105		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	23	244	2	ENST00000381652.3:c.701G>A	p.Arg234His	p.R234H	ENST00000381652	NM_004972.3	234	cGc/cAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349904	89349904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141871215		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	198	869	2	ENST00000301030.4:c.3046G>A	p.Asp1016Asn	p.D1016N	ENST00000301030	NM_001256183.1	1016	Gat/Aat																																																																														
ATR	545	MSKCC	GRCh37	3	142242899	142242899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750252420		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	50	560	1	ENST00000350721.4:c.4088C>T	p.Ala1363Val	p.A1363V	ENST00000350721	NM_001184.3	1363	gCg/gTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2098638	2098638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	76	590	2	ENST00000219476.3:c.22G>T	p.Asp8Tyr	p.D8Y	ENST00000219476	NM_000548.3	8	Gat/Tat																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29095873	29095873	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	231	616	0	ENST00000328354.6:c.961G>T	p.Glu321Ter	p.E321*	ENST00000328354	NM_007194.3	321	Gaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485254	8485254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	59	411	0	ENST00000356435.5:c.3126G>T	p.Glu1042Asp	p.E1042D	ENST00000356435		1042	gaG/gaT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410598	63410598	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1394000391		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	97	860	1	ENST00000330258.3:c.2569C>T	p.Arg857Ter	p.R857*	ENST00000330258	NM_152424.3	857	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	438161	438161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	164	427	0	ENST00000399788.2:c.1808G>A	p.Arg603Gln	p.R603Q	ENST00000399788	NM_001042603.1	603	cGa/cAa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641221	3641221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	191	930	0	ENST00000294008.3:c.2418G>T	p.Glu806Asp	p.E806D	ENST00000294008	NM_032444.2	806	gaG/gaT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210116	55210116	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs778638117		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	40	398	0	ENST00000275493.2:c.226C>A	p.Leu76Ile	p.L76I	ENST00000275493	NM_005228.3	76	Ctt/Att																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781403	135781403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759379027		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	101	638	0	ENST00000298552.3:c.1562C>T	p.Ser521Leu	p.S521L	ENST00000298552	NM_001162426.1	521	tCg/tTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274310	5274310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	139	786	0	ENST00000357368.4:c.137C>T	p.Ser46Leu	p.S46L	ENST00000357368	NM_002850.3	46	tCg/tTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708603	43708603	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	60	448	2	ENST00000382044.4:c.4693G>T	p.Gly1565Ter	p.G1565*	ENST00000382044	NM_001141980.1	1565	Gga/Tga																																																																														
MLH1	4292	MSKCC	GRCh37	3	37061814	37061814	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752430684		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	72	493	0	ENST00000231790.2:c.898C>T	p.Pro300Ser	p.P300S	ENST00000231790	NM_000249.3	300	Ccc/Tcc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072541	5072541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368927897		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	40	337	0	ENST00000381652.3:c.1691G>A	p.Arg564Gln	p.R564Q	ENST00000381652	NM_004972.3	564	cGa/cAa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741473	145741473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768850000		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	178	913	0	ENST00000428558.2:c.1030C>T	p.Arg344Trp	p.R344W	ENST00000428558	NM_004260.3	344	Cgg/Tgg																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15821891	15821891	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768039905		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	47	343	1	ENST00000307771.7:c.284C>T	p.Ala95Val	p.A95V	ENST00000307771	NM_005089.3	95	gCg/gTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38982057	38982057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	44	465	0	ENST00000357387.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000357387	NM_152756.3	222	cGa/cAa																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226252163	226252163	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	30	117	0	ENST00000366813.1:c.111G>T	p.Lys37Asn	p.K37N	ENST00000366813		37	aaG/aaT																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349892	15349892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1427595023		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	110	719	0	ENST00000263377.2:c.3760C>T	p.Arg1254Trp	p.R1254W	ENST00000263377	NM_058243.2	1254	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	123	780	3	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643705	38643705	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1345810751		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	146	678	1	ENST00000299084.4:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000299084	NM_152594.2	392	tCg/tTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5073735	5073735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	36	210	0	ENST00000381652.3:c.1814C>T	p.Ser605Phe	p.S605F	ENST00000381652	NM_004972.3	605	tCt/tTt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11291364	11291364	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1375320238		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	124	521	0	ENST00000361445.4:c.2642G>A	p.Arg881His	p.R881H	ENST00000361445	NM_004958.3	881	cGc/cAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109720	115109720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	192	825	0	ENST00000257566.3:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000257566	NM_016569.3	720	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829497	72829497	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761486040		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	265	567	0	ENST00000268489.5:c.7084G>A	p.Asp2362Asn	p.D2362N	ENST00000268489	NM_006885.3	2362	Gac/Aac																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211440	98211440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758411912		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	212	643	1	ENST00000331920.6:c.3715C>T	p.Arg1239Trp	p.R1239W	ENST00000331920	NM_000264.3	1239	Cgg/Tgg																																																																														
PGR	5241	MSKCC	GRCh37	11	100962543	100962544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	233	564	0	ENST00000325455.5:c.1853dup	p.Asn618LysfsTer8	p.N618Kfs*8	ENST00000325455	NM_001202474.3	618	aac/aaAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905944	50905944	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755457889		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	149	873	2	ENST00000440232.2:c.916C>T	p.Arg306Cys	p.R306C	ENST00000440232	NM_002691.3	306	Cgc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	48916752	48916753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	28	174	0	ENST00000267163.4:c.287dup	p.Glu97GlyfsTer13	p.E97Gfs*13	ENST00000267163	NM_000321.2	94	-/A																																																																														
PAK1	5058	MSKCC	GRCh37	11	77066712	77066712	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1482673833		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	45	317	0	ENST00000356341.3:c.772+1G>A		p.X258_splice	ENST00000356341	NM_002576.4	258																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517874	187517874	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs983524169		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	147	487	1	ENST00000441802.2:c.12820G>A	p.Glu4274Lys	p.E4274K	ENST00000441802	NM_005245.3	4274	Gaa/Aaa																																																																														
CENPA	1058	MSKCC	GRCh37	2	27015053	27015053	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151098324		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	119	503	0	ENST00000335756.4:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000335756	NM_001809.3	52	cGa/cAa																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128432165	128432165	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1371596131		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	41	114	0	ENST00000265960.3:c.281G>A	p.Arg94Gln	p.R94Q	ENST00000265960	NM_001006617.1	94	cGa/cAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020558	69020558	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753700		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	44	345	0	ENST00000288368.4:c.2930C>T	p.Ser977Leu	p.S977L	ENST00000288368	NM_024870.2	977	tCg/tTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89845355	89845355	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778093769		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	101	786	0	ENST00000389301.3:c.1772G>A	p.Arg591Gln	p.R591Q	ENST00000389301	NM_000135.2	591	cGa/cAa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222259	2222259	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371443260		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	264	837	2	ENST00000398665.3:c.3091G>A	p.Asp1031Asn	p.D1031N	ENST00000398665	NM_032482.2	1031	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341701	8341701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766088715		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	56	433	1	ENST00000356435.5:c.4939G>A	p.Glu1647Lys	p.E1647K	ENST00000356435		1647	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116418986	116418986	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199763277		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	108	317	0	ENST00000397752.3:c.3497G>A	p.Arg1166Gln	p.R1166Q	ENST00000397752	NM_000245.2	1166	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1293719	1293719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1400139919		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	177	872	1	ENST00000310581.5:c.1282C>T	p.Arg428Trp	p.R428W	ENST00000310581	NM_198253.2	428	Cgg/Tgg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39234270	39234270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	41	287	0	ENST00000402219.2:c.2575C>A	p.Leu859Ile	p.L859I	ENST00000402219	NM_005633.3	859	Cta/Ata																																																																														
RASA1	5921	MSKCC	GRCh37	5	86682712	86682712	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	26	106	0	ENST00000274376.6:c.2917G>T	p.Glu973Ter	p.E973*	ENST00000274376	NM_002890.2	973	Gaa/Taa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054631	5054631	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760174050		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	19	222	0	ENST00000381652.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000381652	NM_004972.3	228	cGa/cAa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060728	38060728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	184	1022	0	ENST00000250448.2:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000250448	NM_004496.3	421	Gaa/Aaa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614469	38614469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	71	234	0	ENST00000299084.4:c.235G>T	p.Asp79Tyr	p.D79Y	ENST00000299084	NM_152594.2	79	Gac/Tac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295255	15295255	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752312396		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	103	861	0	ENST00000263388.2:c.2417G>A	p.Arg806Gln	p.R806Q	ENST00000263388	NM_000435.2	806	cGa/cAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508508	106508508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	94	314	0	ENST00000359195.3:c.502G>A	p.Val168Met	p.V168M	ENST00000359195	NM_002649.2	168	Gtg/Atg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31451654	31451654	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267600599		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	36	309	0	ENST00000344624.3:c.2668C>T	p.Arg890Cys	p.R890C	ENST00000344624		890	Cgt/Tgt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230818	66230818	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs910705978		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	77	269	0	ENST00000273854.3:c.2153G>A	p.Arg718His	p.R718H	ENST00000273854	NM_004439.5	718	cGc/cAc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43738617	43738617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	94	467	0	ENST00000382044.4:c.3008C>T	p.Ala1003Val	p.A1003V	ENST00000382044	NM_001141980.1	1003	gCg/gTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15952264	15952264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779213445		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	83	661	0	ENST00000268712.3:c.6431C>T	p.Ser2144Leu	p.S2144L	ENST00000268712	NM_006311.3	2144	tCg/tTg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170015161	170015161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs866058843		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	79	477	2	ENST00000295797.4:c.1567C>T	p.Arg523Ter	p.R523*	ENST00000295797	NM_002740.5	523	Cga/Tga																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525837	148525837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765147666		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	84	292	0	ENST00000320356.2:c.620G>A	p.Arg207Gln	p.R207Q	ENST00000320356	NM_004456.4	207	cGa/cAa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70967581	70967581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	153	563	2	ENST00000276594.2:c.1442G>A	p.Arg481Gln	p.R481Q	ENST00000276594	NM_024504.3	481	cGa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76952164	76952164	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	18	115	0	ENST00000373344.5:c.271G>T	p.Glu91Ter	p.E91*	ENST00000373344	NM_000489.3	91	Gaa/Taa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656991	47656991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	50	310	0	ENST00000233146.2:c.1187G>T	p.Arg396Ile	p.R396I	ENST00000233146	NM_000251.2	396	aGa/aTa																																																																														
SMO	6608	MSKCC	GRCh37	7	128845479	128845479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	164	764	0	ENST00000249373.3:c.776C>T	p.Ser259Leu	p.S259L	ENST00000249373	NM_005631.4	259	tCg/tTg																																																																														
STK11	6794	MSKCC	GRCh37	19	1222991	1222991	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750366043		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	111	593	0	ENST00000326873.7:c.928C>T	p.Arg310Trp	p.R310W	ENST00000326873	NM_000455.4	310	Cgg/Tgg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161392	55161392	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767697835		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	185	517	1	ENST00000257290.5:c.3223G>A	p.Asp1075Asn	p.D1075N	ENST00000257290	NM_006206.4	1075	Gac/Aac																																																																														
NF1	4763	MSKCC	GRCh37	17	29552212	29552212	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	33	412	0	ENST00000358273.4:c.1945G>T	p.Glu649Ter	p.E649*	ENST00000358273	NM_001042492.2	649	Gaa/Taa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17941396	17941396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	98	799	0	ENST00000458235.1:c.3012C>A	p.Phe1004Leu	p.F1004L	ENST00000458235	NM_000215.3	1004	ttC/ttA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582911	95582911	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143533680		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	65	324	0	ENST00000343455.3:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000343455	NM_177438.2	544	cGa/cAa																																																																														
FAM175A	0	MSKCC	GRCh37	4	84391522	84391522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779497289		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	38	322	0	ENST00000321945.7:c.310C>T	p.Arg104Cys	p.R104C	ENST00000321945	NM_139076.2	104	Cgt/Tgt																																																																														
NBN	4683	MSKCC	GRCh37	8	90967511	90967511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	41	277	0	ENST00000265433.3:c.1397G>T	p.Arg466Met	p.R466M	ENST00000265433	NM_002485.4	466	aGg/aTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120467977	120467977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1131691315		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	99	689	3	ENST00000256646.2:c.4462G>A	p.Glu1488Lys	p.E1488K	ENST00000256646	NM_024408.3	1488	Gag/Aag																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724631	112724631	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1333953583		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	41	483	0	ENST00000369452.4:c.515G>A	p.Arg172Gln	p.R172Q	ENST00000369452	NM_007373.3	172	cGg/cAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76813058	76813058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	62	536	0	ENST00000373344.5:c.6563G>A	p.Arg2188Gln	p.R2188Q	ENST00000373344	NM_000489.3	2188	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1280292	1280292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201927653		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	339	847	0	ENST00000310581.5:c.1931C>T	p.Thr644Met	p.T644M	ENST00000310581	NM_198253.2	644	aCg/aTg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967503	26967503	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	21	130	0	ENST00000381527.3:c.647-1G>T		p.X216_splice	ENST00000381527	NM_001260.1	216																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093456	30093456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1008608681		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	20	150	0	ENST00000331968.5:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000331968	NM_002742.2	603	Cgt/Tgt																																																																														
NDUFB11	54539	MSKCC	GRCh37	X	47004894	47004894	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	194	639	0	ENST00000377811.3:c.-816C>T		p.*272*	ENST00000377811	NM_001135998.2																																																																																
PPM1D	8493	MSKCC	GRCh37	17	58700977	58700977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375732384		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	135	642	0	ENST00000305921.3:c.568G>A	p.Val190Ile	p.V190I	ENST00000305921	NM_003620.3	190	Gta/Ata																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093411	30093411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201154555		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	29	255	0	ENST00000331968.5:c.1852C>T	p.Arg618Ter	p.R618*	ENST00000331968	NM_002742.2	618	Cga/Tga																																																																														
BARD1	580	MSKCC	GRCh37	2	215646149	215646149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881412		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	34	387	0	ENST00000260947.4:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000260947	NM_000465.2	150	cGa/cAa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285186	15285186	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs975580649		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	172	862	2	ENST00000263388.2:c.4429G>A	p.Asp1477Asn	p.D1477N	ENST00000263388	NM_000435.2	1477	Gac/Aac																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784005	120784005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	238	794	0	ENST00000257552.2:c.980C>T	p.Ser327Leu	p.S327L	ENST00000257552	NM_002442.3	327	tCg/tTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10274006	10274006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	113	506	0	ENST00000340748.4:c.874G>T	p.Asp292Tyr	p.D292Y	ENST00000340748		292	Gat/Tat																																																																														
EP300	2033	MSKCC	GRCh37	22	41568635	41568635	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	56	343	0	ENST00000263253.7:c.4585C>T	p.Arg1529Ter	p.R1529*	ENST00000263253	NM_001429.3	1529	Cga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515182	106515182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	53	377	0	ENST00000359195.3:c.2325G>T	p.Gln775His	p.Q775H	ENST00000359195	NM_002649.2	775	caG/caT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464368	120464368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1034013158		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	115	662	0	ENST00000256646.2:c.5278G>A	p.Asp1760Asn	p.D1760N	ENST00000256646	NM_024408.3	1760	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539619	187539619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	49	374	0	ENST00000441802.2:c.8121C>A	p.Phe2707Leu	p.F2707L	ENST00000441802	NM_005245.3	2707	ttC/ttA																																																																														
FYN	2534	MSKCC	GRCh37	6	112024168	112024168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	112	534	1	ENST00000368678.4:c.617G>A	p.Arg206His	p.R206H	ENST00000368678		206	cGc/cAc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395775	45395775	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374809046		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	45	375	0	ENST00000262160.6:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000262160	NM_005901.5	120	cGa/cAa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610328	81610328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	51	430	0	ENST00000298171.2:c.1926C>A	p.Phe642Leu	p.F642L	ENST00000298171	NM_000369.2	642	ttC/ttA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508439	106508439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	66	344	0	ENST00000359195.3:c.433G>A	p.Glu145Lys	p.E145K	ENST00000359195	NM_002649.2	145	Gag/Aag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517301	157517301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	132	322	0	ENST00000346085.5:c.3865C>T	p.Pro1289Ser	p.P1289S	ENST00000346085	NM_020732.3	1289	Cct/Tct																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52722992	52722992	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1362406458		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	104	754	1	ENST00000322088.6:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000322088	NM_014225.5	393	Gag/Aag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851292	156851292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758359269		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	124	771	1	ENST00000524377.1:c.2249G>A	p.Arg750His	p.R750H	ENST00000524377	NM_002529.3	750	cGt/cAt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15950343	15950343	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	142	575	0	ENST00000268712.3:c.6601A>G	p.Thr2201Ala	p.T2201A	ENST00000268712	NM_006311.3	2201	Aca/Gca																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519502	137519502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	55	360	0	ENST00000367739.4:c.1136C>A	p.Ser379Tyr	p.S379Y	ENST00000367739	NM_000416.2	379	tCt/tAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444297	49444297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746163543		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	120	997	1	ENST00000301067.7:c.3074C>T	p.Ser1025Leu	p.S1025L	ENST00000301067	NM_003482.3	1025	tCg/tTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230572	46230572	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1170640220		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	91	427	0	ENST00000334344.6:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000334344	NM_152641.2	274	cGa/cAa																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319327	62319327	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs778782744		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	121	771	3	ENST00000482936.1:c.1519G>A	p.Asp507Asn	p.D507N	ENST00000482936		507	Gac/Aac																																																																														
MGA	23269	MSKCC	GRCh37	15	42000305	42000305	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1272090898		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	31	268	0	ENST00000219905.7:c.2324C>T	p.Ala775Val	p.A775V	ENST00000219905	NM_001164273.1	775	gCg/gTg																																																																														
SESN3	143686	MSKCC	GRCh37	11	94910992	94910992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	208	557	0	ENST00000536441.1:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000536441	NM_144665.3	380	Cgg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098936	47098936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	112	560	0	ENST00000409792.3:c.6338G>A	p.Arg2113His	p.R2113H	ENST00000409792	NM_014159.6	2113	cGc/cAc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133803	41133803	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768488321		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	41	373	0	ENST00000379561.5:c.1825C>T	p.Arg609Cys	p.R609C	ENST00000379561	NM_002015.3	609	Cgc/Tgc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448552	89448552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	77	553	0	ENST00000336596.2:c.1516G>A	p.Val506Ile	p.V506I	ENST00000336596	NM_005233.5	506	Gta/Ata																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261326	16261326	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760319148		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	69	658	0	ENST00000375759.3:c.8591C>T	p.Ser2864Leu	p.S2864L	ENST00000375759	NM_015001.2	2864	tCg/tTg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47641447	47641447	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	94	254	0	ENST00000233146.2:c.832G>T	p.Glu278Ter	p.E278*	ENST00000233146	NM_000251.2	278	Gaa/Taa																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251853	8251853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748397251		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	90	671	0	ENST00000335790.3:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000335790	NM_002315.2	75	cGa/cAa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120512179	120512179	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781979575		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	48	533	0	ENST00000256646.2:c.1063G>A	p.Asp355Asn	p.D355N	ENST00000256646	NM_024408.3	355	Gac/Aac																																																																														
CYLD	1540	MSKCC	GRCh37	16	50828333	50828333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	84	439	3	ENST00000398568.2:c.2671C>T	p.Arg891Trp	p.R891W	ENST00000398568	NM_001042412.1	891	Cgg/Tgg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128434643	128434643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371524490		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	65	622	1	ENST00000265960.3:c.211G>A	p.Asp71Asn	p.D71N	ENST00000265960	NM_001006617.1	71	Gat/Aat																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286951	33286951	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1453165364		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	90	744	0	ENST00000374542.5:c.1986G>T	p.Lys662Asn	p.K662N	ENST00000374542	NM_001141970.1	662	aaG/aaT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246297	46246297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770601353		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	64	372	0	ENST00000334344.6:c.4391G>A	p.Arg1464His	p.R1464H	ENST00000334344	NM_152641.2	1464	cGc/cAc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202176	138202176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763346708		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	173	523	0	ENST00000237289.4:c.2093C>T	p.Ser698Leu	p.S698L	ENST00000237289	NM_001270507.1	698	tCg/tTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670256	134670256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	91	524	1	ENST00000398015.3:c.167G>A	p.Arg56His	p.R56H	ENST00000398015	NM_004441.4	56	cGc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517885	187517885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1222913841		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	77	499	0	ENST00000441802.2:c.12809G>A	p.Arg4270Gln	p.R4270Q	ENST00000441802	NM_005245.3	4270	cGa/cAa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566300	141566300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	76	490	0	ENST00000220592.5:c.1112C>T	p.Ser371Leu	p.S371L	ENST00000220592	NM_012154.3	371	tCg/tTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539012	187539012	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753412687		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	91	586	0	ENST00000441802.2:c.8728G>A	p.Asp2910Asn	p.D2910N	ENST00000441802	NM_005245.3	2910	Gat/Aat																																																																														
CASP8	841	MSKCC	GRCh37	2	202149886	202149886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	156	605	0	ENST00000358485.4:c.1327G>A	p.Asp443Asn	p.D443N	ENST00000358485	NM_001080125.1	443	Gat/Aat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198263198	198263198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	47	282	0	ENST00000335508.6:c.3121C>T	p.Arg1041Cys	p.R1041C	ENST00000335508	NM_012433.2	1041	Cgt/Tgt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021103	31021103	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	76	560	0	ENST00000375687.4:c.1102G>T	p.Glu368Ter	p.E368*	ENST00000375687	NM_015338.5	368	Gaa/Taa																																																																														
PARK2	0	MSKCC	GRCh37	6	161771166	161771166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1490851246		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	136	728	3	ENST00000366898.1:c.1363C>T	p.Arg455Cys	p.R455C	ENST00000366898	NM_004562.2	455	Cgc/Tgc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273245	198273245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	199	559	0	ENST00000335508.6:c.965C>A	p.Ser322Tyr	p.S322Y	ENST00000335508	NM_012433.2	322	tCt/tAt																																																																														
BARD1	580	MSKCC	GRCh37	2	215617254	215617254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757281184		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	36	319	0	ENST00000260947.4:c.1594G>A	p.Asp532Asn	p.D532N	ENST00000260947	NM_000465.2	532	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540917	187540917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs558300184		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	80	375	1	ENST00000441802.2:c.6823G>A	p.Asp2275Asn	p.D2275N	ENST00000441802	NM_005245.3	2275	Gac/Aac																																																																														
JAK2	3717	MSKCC	GRCh37	9	5123080	5123080	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	35	448	0	ENST00000381652.3:c.3136G>T	p.Glu1046Ter	p.E1046*	ENST00000381652	NM_004972.3	1046	Gaa/Taa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934525	9934525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	57	477	0	ENST00000330684.3:c.1630G>A	p.Val544Ile	p.V544I	ENST00000330684	NM_001134407.1	544	Gtc/Atc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911561	134911561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757883750		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	144	672	1	ENST00000398015.3:c.2026G>A	p.Asp676Asn	p.D676N	ENST00000398015	NM_004441.4	676	Gac/Aac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865314	57865314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	115	810	0	ENST00000228682.2:c.2791C>A	p.Leu931Met	p.L931M	ENST00000228682	NM_005269.2	931	Ctg/Atg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430201	181430201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	60	315	1	ENST00000325404.1:c.53C>T	p.Ser18Leu	p.S18L	ENST00000325404	NM_003106.3	18	tCg/tTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993674	72993674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	97	768	0	ENST00000268489.5:c.371G>T	p.Ser124Ile	p.S124I	ENST00000268489	NM_006885.3	124	aGt/aTt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40469240	40469240	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs747667389		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	50	395	2	ENST00000264657.5:c.2104G>A	p.Ala702Thr	p.A702T	ENST00000264657	NM_139276.2	702	Gct/Act																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98224206	98224206	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750373573		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	39	404	0	ENST00000331920.6:c.2635G>A	p.Asp879Asn	p.D879N	ENST00000331920	NM_000264.3	879	Gat/Aat																																																																														
EZH1	2145	MSKCC	GRCh37	17	40856677	40856677	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs376492983		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	47	375	1	ENST00000428826.2:c.1960C>T	p.Arg654Ter	p.R654*	ENST00000428826		654	Cga/Tga																																																																														
SLX4	84464	MSKCC	GRCh37	16	3645656	3645656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	267	845	0	ENST00000294008.3:c.1963T>C	p.Phe655Leu	p.F655L	ENST00000294008	NM_032444.2	655	Ttt/Ctt																																																																														
ATRX	546	MSKCC	GRCh37	X	76891412	76891412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	54	221	0	ENST00000373344.5:c.4693G>T	p.Val1565Leu	p.V1565L	ENST00000373344	NM_000489.3	1565	Gta/Tta																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434992	110434992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	93	820	0	ENST00000375856.3:c.3409C>T	p.Arg1137Cys	p.R1137C	ENST00000375856	NM_003749.2	1137	Cgc/Tgc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115267948	115267948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	36	395	0	ENST00000438362.2:c.1785C>A	p.Phe595Leu	p.F595L	ENST00000438362	NM_001242891.1	595	ttC/ttA																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11169474	11169474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	194	735	0	ENST00000344626.4:c.4544G>A	p.Arg1515His	p.R1515H	ENST00000344626	NM_003072.3	1515	cGc/cAc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856392	111856392	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868066223		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	46	115	0	ENST00000341259.2:c.443G>A	p.Arg148His	p.R148H	ENST00000341259	NM_005475.2	148	cGc/cAc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46583923	46583923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	217	474	0	ENST00000263734.3:c.430C>T	p.Arg144Cys	p.R144C	ENST00000263734	NM_001430.4	144	Cgt/Tgt																																																																														
CCND3	896	MSKCC	GRCh37	6	41903815	41903815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	126	680	0	ENST00000372991.4:c.742G>A	p.Glu248Lys	p.E248K	ENST00000372991	NM_001760.3	248	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828251	72828251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	125	665	0	ENST00000268489.5:c.8330G>A	p.Ser2777Asn	p.S2777N	ENST00000268489	NM_006885.3	2777	aGt/aAt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061636	38061636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	50	249	0	ENST00000250448.2:c.353C>T	p.Ala118Val	p.A118V	ENST00000250448	NM_004496.3	118	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628869	187628869	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200902471		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	63	600	1	ENST00000441802.2:c.2113G>A	p.Asp705Asn	p.D705N	ENST00000441802	NM_005245.3	705	Gat/Aat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227600	36227600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367682204		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	76	531	0	ENST00000222270.7:c.7169C>T	p.Ser2390Leu	p.S2390L	ENST00000222270	NM_014727.1	2390	tCg/tTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390416	118390416	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520053		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	111	611	1	ENST00000534358.1:c.11230C>T	p.Arg3744Ter	p.R3744*	ENST00000534358	NM_005933.3	3744	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727188	40727188	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	180	563	0	ENST00000373198.4:c.3776A>G	p.His1259Arg	p.H1259R	ENST00000373198	NM_133170.3	1259	cAc/cGc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663590	117663590	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	61	265	0	ENST00000368508.3:c.4642G>T	p.Glu1548Ter	p.E1548*	ENST00000368508	NM_002944.2	1548	Gag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949769	151949769	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760928040		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	100	348	0	ENST00000262189.6:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000262189	NM_170606.2	444	cGg/cAg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123263350	123263350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	108	552	1	ENST00000358487.5:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000358487	NM_000141.4	465	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860907	151860907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	38	297	0	ENST00000262189.6:c.9755G>A	p.Arg3252His	p.R3252H	ENST00000262189	NM_170606.2	3252	cGt/cAt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9781281	9781281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	89	790	4	ENST00000377346.4:c.1786G>A	p.Ala596Thr	p.A596T	ENST00000377346	NM_005026.3	596	Gcc/Acc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187822	11187822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	120	575	0	ENST00000361445.4:c.6075G>T	p.Glu2025Asp	p.E2025D	ENST00000361445	NM_004958.3	2025	gaG/gaT																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259424	11259424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	96	516	1	ENST00000361445.4:c.4144C>A	p.Leu1382Met	p.L1382M	ENST00000361445	NM_004958.3	1382	Ctg/Atg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259444	11259444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	99	488	0	ENST00000361445.4:c.4124G>T	p.Arg1375Ile	p.R1375I	ENST00000361445	NM_004958.3	1375	aGa/aTa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11313928	11313928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	233	702	0	ENST00000361445.4:c.808G>A	p.Glu270Lys	p.E270K	ENST00000361445	NM_004958.3	270	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16174584	16174584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	47	392	0	ENST00000375759.3:c.22C>A	p.Leu8Ile	p.L8I	ENST00000375759	NM_015001.2	8	Ctc/Atc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16235925	16235925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	76	444	0	ENST00000375759.3:c.991C>T	p.Pro331Ser	p.P331S	ENST00000375759	NM_015001.2	331	Ccc/Tcc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242644	16242644	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	31	366	0	ENST00000375759.3:c.1265T>G	p.Phe422Cys	p.F422C	ENST00000375759	NM_015001.2	422	tTt/tGt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254858	16254858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	83	595	0	ENST00000375759.3:c.2123G>T	p.Arg708Ile	p.R708I	ENST00000375759	NM_015001.2	708	aGa/aTa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256495	16256495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	121	700	0	ENST00000375759.3:c.3760G>T	p.Asp1254Tyr	p.D1254Y	ENST00000375759	NM_015001.2	1254	Gat/Tat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262357	16262357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200205688		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	60	349	0	ENST00000375759.3:c.9622G>A	p.Glu3208Lys	p.E3208K	ENST00000375759	NM_015001.2	3208	Gag/Aag																																																																														
CDC42	998	MSKCC	GRCh37	1	22408288	22408288	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	21	211	0	ENST00000344548.3:c.178+1G>A		p.X60_splice	ENST00000344548	NM_001039802.1	60																																																																															
SESN2	83667	MSKCC	GRCh37	1	28601444	28601444	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	97	711	1	ENST00000253063.3:c.1129A>G	p.Thr377Ala	p.T377A	ENST00000253063	NM_031459.4	377	Acc/Gcc																																																																														
STK40	83931	MSKCC	GRCh37	1	36826893	36826893	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201394626		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	105	689	1	ENST00000373129.3:c.41C>T	p.Ser14Leu	p.S14L	ENST00000373129	NM_032017.1	14	tCg/tTg																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39311661	39311661	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	39	274	0	ENST00000373001.3:c.998A>C	p.Lys333Thr	p.K333T	ENST00000373001	NM_022157.3	333	aAa/aCa																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39322572	39322572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	51	508	0	ENST00000373001.3:c.420G>T	p.Leu140Phe	p.L140F	ENST00000373001	NM_022157.3	140	ttG/ttT																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797942	45797942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	51	836	0	ENST00000372115.3:c.787G>T	p.Asp263Tyr	p.D263Y	ENST00000372115	NM_001048171.1	263	Gat/Tat																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46726400	46726400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	64	509	0	ENST00000371975.4:c.479G>T	p.Gly160Val	p.G160V	ENST00000371975	NM_003579.3	160	gGa/gTa																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51436072	51436072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748312116		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	69	434	0	ENST00000262662.1:c.32C>T	p.Ser11Phe	p.S11F	ENST00000262662		11	tCc/tTc																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439634	51439634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	73	405	0	ENST00000262662.1:c.199G>A	p.Asp67Asn	p.D67N	ENST00000262662		67	Gac/Aac																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310556	65310556	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	174	494	0	ENST00000342505.4:c.2132T>C	p.Val711Ala	p.V711A	ENST00000342505	NM_002227.2	711	gTc/gCc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65344822	65344822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	56	320	0	ENST00000342505.4:c.215C>A	p.Pro72His	p.P72H	ENST00000342505	NM_002227.2	72	cCt/cAt																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076766	72076766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	139	585	0	ENST00000357731.5:c.731G>T	p.Arg244Ile	p.R244I	ENST00000357731	NM_173808.2	244	aGa/aTa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400791	72400791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	30	311	0	ENST00000357731.5:c.380G>T	p.Arg127Ile	p.R127I	ENST00000357731	NM_173808.2	127	aGa/aTa																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165572	118165572	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1374365686		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	81	452	1	ENST00000369448.3:c.82G>A	p.Val28Ile	p.V28I	ENST00000369448	NM_017709.3	28	Gtc/Atc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458083	120458083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	117	724	2	ENST00000256646.2:c.7262C>A	p.Ser2421Tyr	p.S2421Y	ENST00000256646	NM_024408.3	2421	tCt/tAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724494	162724494	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1286548568		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	198	596	0	ENST00000367921.3:c.266T>C	p.Ile89Thr	p.I89T	ENST00000367921	NM_006182.2	89	aTt/aCt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163310212	163310212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138752079		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	32	175	0	ENST00000271452.3:c.665G>A	p.Arg222His	p.R222H	ENST00000271452	NM_145697.2	222	cGt/cAt																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957439	175957439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	56	338	0	ENST00000367669.3:c.1957G>T	p.Asp653Tyr	p.D653Y	ENST00000367669	NM_022457.5	653	Gat/Tat																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012322	176012322	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	69	316	0	ENST00000367669.3:c.1612G>T	p.Val538Leu	p.V538L	ENST00000367669	NM_022457.5	538	Gtg/Ttg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176105672	176105672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	22	168	0	ENST00000367669.3:c.843G>T	p.Gln281His	p.Q281H	ENST00000367669	NM_022457.5	281	caG/caT																																																																														
PARP1	142	MSKCC	GRCh37	1	226590039	226590039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	240	638	0	ENST00000366794.5:c.162C>A	p.Phe54Leu	p.F54L	ENST00000366794	NM_001618.3	54	ttC/ttA																																																																														
AKT3	10000	MSKCC	GRCh37	1	243777011	243777011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	32	288	0	ENST00000263826.5:c.658C>A	p.Arg220Ser	p.R220S	ENST00000263826	NM_005465.4	220	Cgt/Agt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243778435	243778435	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	22	107	0	ENST00000263826.5:c.590G>T	p.Ser197Ile	p.S197I	ENST00000263826	NM_005465.4	197	aGc/aTc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246490640	246490640	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	40	219	0	ENST00000388985.4:c.395-1G>A		p.X132_splice	ENST00000388985		132																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246670438	246670438	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	158	679	0	ENST00000388985.4:c.82G>T	p.Glu28Ter	p.E28*	ENST00000388985		28	Gag/Tag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115851	8115851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	130	704	0	ENST00000346208.3:c.1197C>A	p.His399Gln	p.H399Q	ENST00000346208		399	caC/caA																																																																														
RET	5979	MSKCC	GRCh37	10	43615032	43615032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	117	692	0	ENST00000355710.3:c.2446C>A	p.Leu816Ile	p.L816I	ENST00000355710	NM_020975.4	816	Ctc/Atc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63810759	63810759	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	61	400	0	ENST00000279873.7:c.846G>T	p.Lys282Asn	p.K282N	ENST00000279873	NM_032199.2	282	aaG/aaT																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724663	112724663	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	47	454	1	ENST00000369452.4:c.547G>T	p.Glu183Ter	p.E183*	ENST00000369452	NM_007373.3	183	Gaa/Taa																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14300915	14300915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	11	154	0	ENST00000256196.4:c.583G>T	p.Asp195Tyr	p.D195Y	ENST00000256196		195	Gac/Tac																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64126759	64126759	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	132	639	0	ENST00000334205.4:c.52G>T	p.Glu18Ter	p.E18*	ENST00000334205	NM_003942.2	18	Gaa/Taa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127670	64127670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	172	802	2	ENST00000334205.4:c.163G>A	p.Gly55Arg	p.G55R	ENST00000334205	NM_003942.2	55	Ggg/Agg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64135964	64135964	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1451318965		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	98	793	2	ENST00000334205.4:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000334205	NM_003942.2	409	Gag/Aag																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514036	69514036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	114	630	0	ENST00000294312.3:c.645G>T	p.Glu215Asp	p.E215D	ENST00000294312	NM_005117.2	215	gaG/gaT																																																																														
MRE11A	0	MSKCC	GRCh37	11	94211920	94211920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	62	288	0	ENST00000323929.3:c.525G>T	p.Lys175Asn	p.K175N	ENST00000323929	NM_005591.3	175	aaG/aaT																																																																														
MRE11A	0	MSKCC	GRCh37	11	94224027	94224027	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	98	256	0	ENST00000323929.3:c.125A>C	p.Glu42Ala	p.E42A	ENST00000323929	NM_005591.3	42	gAa/gCa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94917655	94917655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746291519		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	33	388	0	ENST00000536441.1:c.866G>A	p.Arg289His	p.R289H	ENST00000536441	NM_144665.3	289	cGt/cAt																																																																														
SESN3	143686	MSKCC	GRCh37	11	94917698	94917698	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	51	394	0	ENST00000536441.1:c.823G>T	p.Glu275Ter	p.E275*	ENST00000536441	NM_144665.3	275	Gaa/Taa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94922974	94922974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1409733830		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	48	319	0	ENST00000536441.1:c.494G>A	p.Arg165Gln	p.R165Q	ENST00000536441	NM_144665.3	165	cGa/cAa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195500	102195500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	41	432	0	ENST00000263464.3:c.260A>G	p.Lys87Arg	p.K87R	ENST00000263464	NM_001165.4	87	aAa/aGa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195814	102195814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	62	400	0	ENST00000263464.3:c.574G>T	p.Ala192Ser	p.A192S	ENST00000263464	NM_001165.4	192	Gca/Tca																																																																														
ATM	472	MSKCC	GRCh37	11	108141852	108141852	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	93	261	0	ENST00000278616.4:c.2900T>G	p.Leu967Arg	p.L967R	ENST00000278616	NM_000051.3	967	cTt/cGt																																																																														
ATM	472	MSKCC	GRCh37	11	108155074	108155074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	62	325	0	ENST00000278616.4:c.3867G>T	p.Lys1289Asn	p.K1289N	ENST00000278616	NM_000051.3	1289	aaG/aaT																																																																														
ATM	472	MSKCC	GRCh37	11	108164087	108164087	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	27	51	0	ENST00000278616.4:c.4659A>C	p.Glu1553Asp	p.E1553D	ENST00000278616	NM_000051.3	1553	gaA/gaC																																																																														
ATM	472	MSKCC	GRCh37	11	108192142	108192142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	64	445	1	ENST00000278616.4:c.6567C>A	p.Phe2189Leu	p.F2189L	ENST00000278616	NM_000051.3	2189	ttC/ttA																																																																														
ATM	472	MSKCC	GRCh37	11	108202620	108202620	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	58	212	0	ENST00000278616.4:c.7644T>G	p.Ile2548Met	p.I2548M	ENST00000278616	NM_000051.3	2548	atT/atG																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344222	118344222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	131	618	0	ENST00000534358.1:c.2348C>A	p.Ser783Tyr	p.S783Y	ENST00000534358	NM_005933.3	783	tCt/tAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362546	118362546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782229111		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	72	456	1	ENST00000534358.1:c.4907G>A	p.Arg1636Gln	p.R1636Q	ENST00000534358	NM_005933.3	1636	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118371754	118371754	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	75	305	0	ENST00000534358.1:c.6211A>G	p.Thr2071Ala	p.T2071A	ENST00000534358	NM_005933.3	2071	Aca/Gca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392721	118392721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	78	504	0	ENST00000534358.1:c.11753C>A	p.Ser3918Tyr	p.S3918Y	ENST00000534358	NM_005933.3	3918	tCt/tAt																																																																														
CBL	867	MSKCC	GRCh37	11	119142500	119142500	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	133	439	0	ENST00000264033.4:c.499G>T	p.Gly167Ter	p.G167*	ENST00000264033	NM_005188.3	167	Gga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416120	416120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777946084		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	42	317	2	ENST00000399788.2:c.4066G>A	p.Asp1356Asn	p.D1356N	ENST00000399788	NM_001042603.1	1356	Gac/Aac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244818	46244818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	61	646	0	ENST00000334344.6:c.2912C>A	p.Ser971Tyr	p.S971Y	ENST00000334344	NM_152641.2	971	tCt/tAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416438	49416438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	85	665	0	ENST00000301067.7:c.16273G>A	p.Glu5425Lys	p.E5425K	ENST00000301067	NM_003482.3	5425	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418445	49418445	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745599611		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	71	642	1	ENST00000301067.7:c.15968G>A	p.Arg5323His	p.R5323H	ENST00000301067	NM_003482.3	5323	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	240	754	1	ENST00000301067.7:c.15545G>A	p.Gly5182Asp	p.G5182D	ENST00000301067	NM_003482.3	5182	gGc/gAc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478842	56478842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	95	868	0	ENST00000267101.3:c.298C>T	p.Pro100Ser	p.P100S	ENST00000267101	NM_001982.3	100	Ccc/Tcc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58143279	58143279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	133	353	0	ENST00000257904.6:c.641T>C	p.Phe214Ser	p.F214S	ENST00000257904	NM_000075.3	214	tTc/tCc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111884566	111884566	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776172124		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	155	479	0	ENST00000341259.2:c.742C>T	p.Pro248Ser	p.P248S	ENST00000341259	NM_005475.2	248	Ccc/Tcc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888193	112888193	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	66	593	0	ENST00000351677.2:c.209A>C	p.Lys70Thr	p.K70T	ENST00000351677	NM_002834.3	70	aAa/aCa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924292	112924292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	133	681	0	ENST00000351677.2:c.1238G>T	p.Arg413Ile	p.R413I	ENST00000351677	NM_002834.3	413	aGa/aTa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112365	115112365	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751549922		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	50	411	0	ENST00000257566.3:c.1375C>T	p.Arg459Cys	p.R459C	ENST00000257566	NM_016569.3	459	Cgc/Tgc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434409	121434409	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	125	875	1	ENST00000257555.6:c.1173G>T	p.Gln391His	p.Q391H	ENST00000257555		391	caG/caT																																																																														
POLE	5426	MSKCC	GRCh37	12	133212572	133212572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	154	568	0	ENST00000320574.5:c.5717C>T	p.Ser1906Phe	p.S1906F	ENST00000320574	NM_006231.2	1906	tCt/tTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133219551	133219551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1292909825		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	230	674	1	ENST00000320574.5:c.4583C>T	p.Ala1528Val	p.A1528V	ENST00000320574	NM_006231.2	1528	gCc/gTc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26923248	26923249	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	31	316	0	ENST00000381527.3:c.248dup	p.Val84GlyfsTer7	p.V84Gfs*7	ENST00000381527	NM_001260.1	82	caa/cAaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601369	28601369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	63	203	0	ENST00000241453.7:c.2063A>G	p.Tyr688Cys	p.Y688C	ENST00000241453	NM_004119.2	688	tAc/tGc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609767	28609767	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	43	582	0	ENST00000241453.7:c.1462A>G	p.Asn488Asp	p.N488D	ENST00000241453	NM_004119.2	488	Aac/Gac																																																																														
FLT1	2321	MSKCC	GRCh37	13	28971144	28971144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	40	322	0	ENST00000282397.4:c.1613C>T	p.Ser538Phe	p.S538F	ENST00000282397	NM_002019.4	538	tCc/tTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32899306	32899306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	50	97	0	ENST00000380152.3:c.410C>A	p.Ser137Tyr	p.S137Y	ENST00000380152		137	tCt/tAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912129	32912129	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	33	564	0	ENST00000380152.3:c.3637G>T	p.Glu1213Ter	p.E1213*	ENST00000380152		1213	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937518	32937518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	54	549	0	ENST00000380152.3:c.8179G>A	p.Ala2727Thr	p.A2727T	ENST00000380152		2727	Gct/Act																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972672	32972672	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786202073		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	94	347	0	ENST00000380152.3:c.10022A>G	p.Asp3341Gly	p.D3341G	ENST00000380152		3341	gAc/gGc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134682	41134682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	50	406	0	ENST00000379561.5:c.946C>T	p.Arg316Ter	p.R316*	ENST00000379561	NM_002015.3	316	Cga/Tga																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240201	41240201	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1003365110		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	18	87	1	ENST00000379561.5:c.149C>A	p.Ala50Asp	p.A50D	ENST00000379561	NM_002015.3	50	gCc/gAc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337612	73337612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	21	188	0	ENST00000377767.4:c.2104C>T	p.Leu702Phe	p.L702F	ENST00000377767	NM_014953.3	702	Ctt/Ttt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73350214	73350214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	46	137	0	ENST00000377767.4:c.671G>T	p.Gly224Val	p.G224V	ENST00000377767	NM_014953.3	224	gGa/gTa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514637	103514637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1246763212		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	72	447	0	ENST00000355739.4:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000355739	NM_000123.3	380	Gaa/Aaa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518109	103518109	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	60	378	0	ENST00000355739.4:c.2047G>T	p.Glu683Ter	p.E683*	ENST00000355739	NM_000123.3	683	Gag/Tag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528243	103528243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	78	288	0	ENST00000355739.4:c.3551G>T	p.Arg1184Met	p.R1184M	ENST00000355739	NM_000123.3	1184	aGg/aTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435376	110435376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	130	575	1	ENST00000375856.3:c.3025G>A	p.Glu1009Lys	p.E1009K	ENST00000375856	NM_003749.2	1009	Gag/Aag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436084	110436084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	104	849	0	ENST00000375856.3:c.2317G>A	p.Asp773Asn	p.D773N	ENST00000375856	NM_003749.2	773	Gac/Aac																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436092	110436092	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755626807		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	116	848	0	ENST00000375856.3:c.2309C>T	p.Ser770Phe	p.S770F	ENST00000375856	NM_003749.2	770	tCc/tTc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68292193	68292193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	82	312	0	ENST00000487270.1:c.97C>A	p.Leu33Ile	p.L33I	ENST00000487270	NM_133509.3	33	Ctt/Att																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609498	81609498	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	75	493	0	ENST00000298171.2:c.1096T>G	p.Phe366Val	p.F366V	ENST00000298171	NM_000369.2	366	Ttt/Gtt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582958	95582958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	66	327	0	ENST00000343455.3:c.1584A>G	p.Ile528Met	p.I528M	ENST00000343455	NM_177438.2	528	atA/atG																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590950	95590950	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs779851333		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	40	275	0	ENST00000343455.3:c.959A>G	p.Lys320Arg	p.K320R	ENST00000343455	NM_177438.2	320	aAa/aGa																																																																														
AKT1	207	MSKCC	GRCh37	14	105239351	105239351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1168658858		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	117	858	0	ENST00000349310.3:c.1036C>T	p.Arg346Cys	p.R346C	ENST00000349310	NM_001014432.1	346	Cgc/Tgc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38617003	38617003	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	39	204	0	ENST00000299084.4:c.416A>C	p.Asp139Ala	p.D139A	ENST00000299084	NM_152594.2	139	gAc/gCc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643282	38643282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	40	371	0	ENST00000299084.4:c.752G>A	p.Arg251Gln	p.R251Q	ENST00000299084	NM_152594.2	251	cGa/cAa																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40684192	40684192	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199907924		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	62	472	1	ENST00000249776.8:c.790G>A	p.Glu264Lys	p.E264K	ENST00000249776	NM_033286.3	264	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961573	41961573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	54	541	1	ENST00000219905.7:c.481G>T	p.Glu161Ter	p.E161*	ENST00000219905	NM_001164273.1	161	Gaa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	41989088	41989088	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs938158021		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	54	601	0	ENST00000219905.7:c.1880G>A	p.Arg627Gln	p.R627Q	ENST00000219905	NM_001164273.1	627	cGa/cAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42021423	42021423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	134	475	0	ENST00000219905.7:c.3719G>A	p.Arg1240Gln	p.R1240Q	ENST00000219905	NM_001164273.1	1240	cGa/cAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42042723	42042723	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	56	403	0	ENST00000219905.7:c.6918A>C	p.Glu2306Asp	p.E2306D	ENST00000219905	NM_001164273.1	2306	gaA/gaC																																																																														
MGA	23269	MSKCC	GRCh37	15	42058210	42058210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	30	199	0	ENST00000219905.7:c.7930G>A	p.Asp2644Asn	p.D2644N	ENST00000219905	NM_001164273.1	2644	Gac/Aac																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701901	43701901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	34	261	0	ENST00000382044.4:c.5344G>T	p.Glu1782Ter	p.E1782*	ENST00000382044	NM_001141980.1	1782	Gaa/Taa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762232	43762232	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	197	627	0	ENST00000382044.4:c.1213G>T	p.Glu405Ter	p.E405*	ENST00000382044	NM_001141980.1	405	Gaa/Taa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43771617	43771617	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	81	523	0	ENST00000382044.4:c.766G>T	p.Glu256Ter	p.E256*	ENST00000382044	NM_001141980.1	256	Gag/Tag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423631	88423631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	116	457	0	ENST00000360948.2:c.2204G>A	p.Arg735His	p.R735H	ENST00000360948	NM_001012338.2	735	cGc/cAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472448	88472448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	101	570	0	ENST00000360948.2:c.2107G>T	p.Asp703Tyr	p.D703Y	ENST00000360948	NM_001012338.2	703	Gat/Tat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483961	88483961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	104	611	0	ENST00000360948.2:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000360948	NM_001012338.2	537	Gac/Tac																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669595	88669595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	45	464	0	ENST00000360948.2:c.1303G>A	p.Ala435Thr	p.A435T	ENST00000360948	NM_001012338.2	435	Gca/Aca																																																																														
BLM	641	MSKCC	GRCh37	15	91303988	91303988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	64	480	0	ENST00000355112.3:c.1385C>A	p.Ser462Tyr	p.S462Y	ENST00000355112	NM_000057.2	462	tCt/tAt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99460077	99460077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	146	503	0	ENST00000268035.6:c.2173T>G	p.Phe725Val	p.F725V	ENST00000268035	NM_000875.3	725	Ttc/Gtc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347146	347146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	125	841	0	ENST00000262320.3:c.1865C>T	p.Ala622Val	p.A622V	ENST00000262320	NM_003502.3	622	gCc/gTc																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2636765	2636765	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs535986266		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	273	711	0	ENST00000342085.4:c.1214C>A	p.Pro405His	p.P405H	ENST00000342085	NM_002613.4	405	cCc/cAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633383	3633383	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200178217		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	199	910	0	ENST00000294008.3:c.4868C>T	p.Ala1623Val	p.A1623V	ENST00000294008	NM_032444.2	1623	gCg/gTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639913	3639913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	182	767	0	ENST00000294008.3:c.3726G>T	p.Glu1242Asp	p.E1242D	ENST00000294008	NM_032444.2	1242	gaG/gaT																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641118	3641118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	123	1012	0	ENST00000294008.3:c.2521G>T	p.Glu841Ter	p.E841*	ENST00000294008	NM_032444.2	841	Gaa/Taa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779335	3779335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	96	785	0	ENST00000262367.5:c.5713C>T	p.Pro1905Ser	p.P1905S	ENST00000262367	NM_004380.2	1905	Ccc/Tcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828113	3828113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	47	557	0	ENST00000262367.5:c.2012C>T	p.Ser671Leu	p.S671L	ENST00000262367	NM_004380.2	671	tCg/tTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857568	9857568	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	90	472	0	ENST00000330684.3:c.3833A>T	p.Gln1278Leu	p.Q1278L	ENST00000330684	NM_001134407.1	1278	cAa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031922	10031922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	190	677	0	ENST00000330684.3:c.901A>G	p.Thr301Ala	p.T301A	ENST00000330684	NM_001134407.1	301	Acc/Gcc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14024589	14024589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	25	296	0	ENST00000311895.7:c.815C>A	p.Pro272His	p.P272H	ENST00000311895	NM_005236.2	272	cCt/cAt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646423	23646423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753470554		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	86	549	0	ENST00000261584.4:c.1444C>T	p.Leu482Phe	p.L482F	ENST00000261584	NM_024675.3	482	Ctc/Ttc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128549	30128549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	178	710	0	ENST00000263025.4:c.833G>A	p.Arg278Gln	p.R278Q	ENST00000263025	NM_002746.2	278	cGa/cAa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782163	56782163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	90	351	0	ENST00000308159.5:c.4G>A	p.Asp2Asn	p.D2N	ENST00000308159	NM_014669.4	2	Gat/Aat																																																																														
NUP93	9688	MSKCC	GRCh37	16	56855435	56855435	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	65	323	0	ENST00000308159.5:c.584A>C	p.Lys195Thr	p.K195T	ENST00000308159	NM_014669.4	195	aAa/aCa																																																																														
CBFB	865	MSKCC	GRCh37	16	67063329	67063329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763073693		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	87	256	0	ENST00000412916.2:c.19G>A	p.Asp7Asn	p.D7N	ENST00000412916		7	Gac/Aac																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650716	67650716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780911615		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	103	663	1	ENST00000264010.4:c.1021C>T	p.Arg341Cys	p.R341C	ENST00000264010	NM_006565.3	341	Cgt/Tgt																																																																														
CDH1	999	MSKCC	GRCh37	16	68857486	68857486	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	134	516	0	ENST00000261769.5:c.2121T>G	p.Ile707Met	p.I707M	ENST00000261769	NM_004360.3	707	atT/atG																																																																														
CDH1	999	MSKCC	GRCh37	16	68867239	68867239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	137	665	0	ENST00000261769.5:c.2486C>T	p.Ser829Phe	p.S829F	ENST00000261769	NM_004360.3	829	tCt/tTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831993	72831993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	197	630	0	ENST00000268489.5:c.4588G>T	p.Gly1530Cys	p.G1530C	ENST00000268489	NM_006885.3	1530	Ggt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984615	72984615	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753727111		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	64	799	1	ENST00000268489.5:c.2969G>A	p.Arg990His	p.R990H	ENST00000268489	NM_006885.3	990	cGc/cAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81892729	81892729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	28	200	0	ENST00000359376.3:c.440G>T	p.Arg147Ile	p.R147I	ENST00000359376	NM_002661.3	147	aGa/aTa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81934244	81934244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	83	641	0	ENST00000359376.3:c.1221G>T	p.Glu407Asp	p.E407D	ENST00000359376	NM_002661.3	407	gaG/gaT																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972466	81972466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	95	569	1	ENST00000359376.3:c.3259G>T	p.Val1087Leu	p.V1087L	ENST00000359376	NM_002661.3	1087	Gtg/Ttg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350552	89350552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	48	367	1	ENST00000301030.4:c.2398G>A	p.Glu800Lys	p.E800K	ENST00000301030	NM_001256183.1	800	Gaa/Aaa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89813066	89813066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	79	692	0	ENST00000389301.3:c.3439G>T	p.Asp1147Tyr	p.D1147Y	ENST00000389301	NM_000135.2	1147	Gac/Tac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89816220	89816220	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376103033		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	121	742	0	ENST00000389301.3:c.3157C>T	p.Arg1053Cys	p.R1053C	ENST00000389301	NM_000135.2	1053	Cgc/Tgc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217618	7217618	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	31	435	0	ENST00000380728.2:c.309G>T	p.Lys103Asn	p.K103N	ENST00000380728		103	aaG/aaT																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7978920	7978920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	140	440	0	ENST00000319144.4:c.1647G>T	p.Glu549Asp	p.E549D	ENST00000319144	NM_001139.2	549	gaG/gaT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971428	15971428	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	150	386	0	ENST00000268712.3:c.4521T>G	p.Ile1507Met	p.I1507M	ENST00000268712	NM_006311.3	1507	atT/atG																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15975504	15975504	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	44	461	0	ENST00000268712.3:c.3850T>C	p.Ser1284Pro	p.S1284P	ENST00000268712	NM_006311.3	1284	Tct/Cct																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16001703	16001703	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1176533842		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	35	424	0	ENST00000268712.3:c.2798G>A	p.Arg933Gln	p.R933Q	ENST00000268712	NM_006311.3	933	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29483092	29483092	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1351732760		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	31	241	0	ENST00000358273.4:c.152T>G	p.Phe51Cys	p.F51C	ENST00000358273	NM_001042492.2	51	tTt/tGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29509525	29509525	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	31	269	0	ENST00000358273.4:c.731-1G>T		p.X244_splice	ENST00000358273	NM_001042492.2	244																																																																															
NF1	4763	MSKCC	GRCh37	17	29652860	29652860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	13	197	0	ENST00000358273.4:c.4858G>T	p.Gly1620Cys	p.G1620C	ENST00000358273	NM_001042492.2	1620	Ggt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29701099	29701099	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778233452		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	110	532	0	ENST00000358273.4:c.8446G>A	p.Gly2816Arg	p.G2816R	ENST00000358273	NM_001042492.2	2816	Gga/Aga																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30323877	30323877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	25	124	0	ENST00000322652.5:c.1855C>A	p.Leu619Ile	p.L619I	ENST00000322652	NM_015355.2	619	Ctc/Atc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37667820	37667820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	131	540	0	ENST00000447079.4:c.2705G>A	p.Arg902Gln	p.R902Q	ENST00000447079	NM_015083.1	902	cGa/cAa																																																																														
RARA	5914	MSKCC	GRCh37	17	38504581	38504582	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGC			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	92	683	0	ENST00000254066.5:c.198_200dup	p.Ser68dup	p.S68dup	ENST00000254066	NM_000964.3	68	-/AGC																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243786	41243786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	57	469	0	ENST00000357654.3:c.3762G>T	p.Lys1254Asn	p.K1254N	ENST00000357654	NM_007294.3	1254	aaG/aaT																																																																														
SPOP	8405	MSKCC	GRCh37	17	47684725	47684725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	41	315	0	ENST00000347630.2:c.724G>A	p.Glu242Lys	p.E242K	ENST00000347630	NM_001007230.1	242	Gaa/Aaa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47700156	47700156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	72	504	0	ENST00000347630.2:c.17G>T	p.Ser6Ile	p.S6I	ENST00000347630	NM_001007230.1	6	aGt/aTt																																																																														
MSI2	124540	MSKCC	GRCh37	17	55339540	55339540	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1439557709		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	95	606	0	ENST00000284073.2:c.299G>A	p.Arg100Gln	p.R100Q	ENST00000284073	NM_138962.2	100	cGa/cAa																																																																														
MSI2	124540	MSKCC	GRCh37	17	55478759	55478759	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	133	473	0	ENST00000284073.2:c.332A>C	p.Lys111Thr	p.K111T	ENST00000284073	NM_138962.2	111	aAa/aCa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58701062	58701062	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	105	612	0	ENST00000305921.3:c.653A>C	p.Lys218Thr	p.K218T	ENST00000305921	NM_003620.3	218	aAg/aCg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740570	58740570	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	133	450	0	ENST00000305921.3:c.1475A>C	p.Asn492Thr	p.N492T	ENST00000305921	NM_003620.3	492	aAt/aCt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761475	59761475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	76	280	0	ENST00000259008.2:c.2932G>A	p.Gly978Arg	p.G978R	ENST00000259008	NM_032043.2	978	Ggg/Agg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59770803	59770803	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146031731		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	57	226	0	ENST00000259008.2:c.2563C>T	p.Arg855Cys	p.R855C	ENST00000259008	NM_032043.2	855	Cgc/Tgc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117691	70117691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	163	773	0	ENST00000245479.2:c.159C>A	p.Phe53Leu	p.F53L	ENST00000245479	NM_000346.3	53	ttC/ttA																																																																														
YES1	7525	MSKCC	GRCh37	18	736813	736813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	43	252	0	ENST00000314574.4:c.1286G>T	p.Arg429Ile	p.R429I	ENST00000314574	NM_005433.3	429	aGa/aTa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39620659	39620659	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	38	303	0	ENST00000262039.4:c.2057A>C	p.Gln686Pro	p.Q686P	ENST00000262039	NM_002647.2	686	cAg/cCg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39637929	39637929	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	171	572	0	ENST00000262039.4:c.2346A>C	p.Glu782Asp	p.E782D	ENST00000262039	NM_002647.2	782	gaA/gaC																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45394794	45394794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	74	426	0	ENST00000262160.6:c.555G>T	p.Glu185Asp	p.E185D	ENST00000262160	NM_005901.5	185	gaG/gaT																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395628	45395628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	47	265	0	ENST00000262160.6:c.506G>T	p.Arg169Ile	p.R169I	ENST00000262160	NM_005901.5	169	aGa/aTa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573565	48573565	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	64	189	0	ENST00000342988.3:c.149A>C	p.Lys50Thr	p.K50T	ENST00000342988	NM_005359.5	50	aAa/aCa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56367713	56367713	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	42	249	0	ENST00000348428.3:c.539T>C	p.Val180Ala	p.V180A	ENST00000348428	NM_006785.3	180	gTg/gCg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118983	3118983	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778948783		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	59	809	3	ENST00000078429.4:c.667G>A	p.Val223Met	p.V223M	ENST00000078429	NM_002067.2	223	Gtg/Atg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244190	5244190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760369713		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	137	749	0	ENST00000357368.4:c.1292G>A	p.Arg431Gln	p.R431Q	ENST00000357368	NM_002850.3	431	cGg/cAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5265061	5265061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1363057483		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	156	826	1	ENST00000357368.4:c.526G>A	p.Asp176Asn	p.D176N	ENST00000357368	NM_002850.3	176	Gat/Aat																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5273516	5273516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	80	814	0	ENST00000357368.4:c.316G>A	p.Glu106Lys	p.E106K	ENST00000357368	NM_002850.3	106	Gag/Aag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10251851	10251851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	64	639	0	ENST00000340748.4:c.3276G>T	p.Lys1092Asn	p.K1092N	ENST00000340748		1092	aaG/aaT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10284576	10284576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	70	351	0	ENST00000340748.4:c.606G>T	p.Glu202Asp	p.E202D	ENST00000340748		202	gaG/gaT																																																																														
CARM1	10498	MSKCC	GRCh37	19	11032390	11032390	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775185209		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	165	874	2	ENST00000327064.4:c.1784C>T	p.Ser595Leu	p.S595L	ENST00000327064	NM_199141.1	595	tCg/tTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281295	15281295	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	130	772	0	ENST00000263388.2:c.4961T>C	p.Leu1654Pro	p.L1654P	ENST00000263388	NM_000435.2	1654	cTg/cCg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375262	15375262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1299618611		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	71	700	1	ENST00000263377.2:c.1165G>A	p.Asp389Asn	p.D389N	ENST00000263377	NM_058243.2	389	Gac/Aac																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17384795	17384795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376352234		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	64	826	0	ENST00000359435.4:c.427G>A	p.Glu143Lys	p.E143K	ENST00000359435	NM_001033549.1	143	Gag/Aag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946747	17946747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756418657		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	272	743	3	ENST00000458235.1:c.1900G>A	p.Ala634Thr	p.A634T	ENST00000458235	NM_000215.3	634	Gcc/Acc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273116	18273116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	92	734	0	ENST00000222254.8:c.1006T>C	p.Ser336Pro	p.S336P	ENST00000222254	NM_005027.3	336	Tca/Cca																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18277959	18277959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	109	586	3	ENST00000222254.8:c.1579C>T	p.Arg527Trp	p.R527W	ENST00000222254	NM_005027.3	527	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214671	36214671	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1226451581		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	134	678	0	ENST00000222270.7:c.3097G>A	p.Asp1033Asn	p.D1033N	ENST00000222270	NM_014727.1	1033	Gat/Aat																																																																														
AKT2	208	MSKCC	GRCh37	19	40744853	40744853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780894376		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	85	757	0	ENST00000392038.2:c.667G>A	p.Asp223Asn	p.D223N	ENST00000392038	NM_001626.4	223	Gac/Aac																																																																														
AXL	558	MSKCC	GRCh37	19	41759575	41759575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	118	693	1	ENST00000301178.4:c.1998G>T	p.Lys666Asn	p.K666N	ENST00000301178	NM_021913.4	666	aaG/aaT																																																																														
AXL	558	MSKCC	GRCh37	19	41763475	41763475	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	93	646	0	ENST00000301178.4:c.2274T>G	p.Ile758Met	p.I758M	ENST00000301178	NM_021913.4	758	atT/atG																																																																														
CIC	23152	MSKCC	GRCh37	19	42797300	42797300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	61	763	0	ENST00000575354.2:c.3662C>A	p.Ser1221Tyr	p.S1221Y	ENST00000575354	NM_015125.3	1221	tCt/tAt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867140	45867140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	73	786	2	ENST00000391945.4:c.979G>A	p.Glu327Lys	p.E327K	ENST00000391945	NM_000400.3	327	Gag/Aag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52729040	52729040	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	186	551	0	ENST00000322088.6:c.1732T>G	p.Phe578Val	p.F578V	ENST00000322088	NM_014225.5	578	Ttt/Gtt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26029131	26029131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	89	323	0	ENST00000435504.4:c.219G>T	p.Lys73Asn	p.K73N	ENST00000435504		73	aaG/aaT																																																																														
ALK	238	MSKCC	GRCh37	2	29436878	29436878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	132	702	0	ENST00000389048.3:c.3715T>C	p.Tyr1239His	p.Y1239H	ENST00000389048	NM_004304.4	1239	Tat/Cat																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213383	39213383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	127	783	2	ENST00000402219.2:c.3584G>A	p.Arg1195Gln	p.R1195Q	ENST00000402219	NM_005633.3	1195	cGa/cAa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222288	39222288	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs199856844		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	65	512	0	ENST00000402219.2:c.3322G>C	p.Asp1108His	p.D1108H	ENST00000402219	NM_005633.3	1108	Gat/Cat																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224088	39224088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	43	241	0	ENST00000402219.2:c.3056G>A	p.Arg1019Gln	p.R1019Q	ENST00000402219	NM_005633.3	1019	cGa/cAa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224453	39224453	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	33	356	0	ENST00000402219.2:c.2905G>T	p.Gly969Ter	p.G969*	ENST00000402219	NM_005633.3	969	Gga/Tga																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693820	47693820	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	82	236	0	ENST00000233146.2:c.1534A>C	p.Lys512Gln	p.K512Q	ENST00000233146	NM_000251.2	512	Aaa/Caa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47709928	47709928	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1284087975		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	52	151	0	ENST00000233146.2:c.2645A>C	p.Lys882Thr	p.K882T	ENST00000233146	NM_000251.2	882	aAa/aCa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027770	48027770	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs764816440		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	75	294	0	ENST00000234420.5:c.2648A>C	p.Lys883Thr	p.K883T	ENST00000234420	NM_000179.2	883	aAg/aCg																																																																														
REL	5966	MSKCC	GRCh37	2	61118896	61118896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	172	437	0	ENST00000295025.8:c.89G>A	p.Arg30Gln	p.R30Q	ENST00000295025	NM_002908.2	30	cGa/cAa																																																																														
REL	5966	MSKCC	GRCh37	2	61128189	61128189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	48	89	0	ENST00000295025.8:c.365G>T	p.Arg122Ile	p.R122I	ENST00000295025	NM_002908.2	122	aGa/aTa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715334	61715334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	53	496	0	ENST00000401558.2:c.2279C>A	p.Ser760Tyr	p.S760Y	ENST00000401558	NM_003400.3	760	tCt/tAt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719849	61719849	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	26	248	0	ENST00000401558.2:c.1419A>C	p.Glu473Asp	p.E473D	ENST00000401558	NM_003400.3	473	gaA/gaC																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128018908	128018908	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	68	455	1	ENST00000285398.2:c.1960G>T	p.Glu654Ter	p.E654*	ENST00000285398	NM_000122.1	654	Gag/Tag																																																																														
ACVR1	90	MSKCC	GRCh37	2	158595013	158595013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	116	447	0	ENST00000263640.3:c.1334G>T	p.Arg445Met	p.R445M	ENST00000263640	NM_001105.4	445	aGg/aTg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682865	190682865	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	28	157	0	ENST00000441310.2:c.541A>C	p.Ile181Leu	p.I181L	ENST00000441310	NM_000534.4	181	Atc/Ctc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719736	190719736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	19	173	0	ENST00000441310.2:c.1738C>A	p.Leu580Ile	p.L580I	ENST00000441310	NM_000534.4	580	Ctt/Att																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198261006	198261006	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	59	391	0	ENST00000335508.6:c.3313G>T	p.Glu1105Ter	p.E1105*	ENST00000335508	NM_012433.2	1105	Gaa/Taa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198268406	198268406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	46	369	0	ENST00000335508.6:c.1622C>A	p.Ser541Tyr	p.S541Y	ENST00000335508	NM_012433.2	541	tCt/tAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273209	198273209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	246	642	0	ENST00000335508.6:c.1001G>T	p.Arg334Ile	p.R334I	ENST00000335508	NM_012433.2	334	aGa/aTa																																																																														
CASP8	841	MSKCC	GRCh37	2	202137409	202137409	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	66	410	0	ENST00000358485.4:c.637G>T	p.Glu213Ter	p.E213*	ENST00000358485	NM_001080125.1	213	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578355	212578355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	76	311	0	ENST00000342788.4:c.902C>T	p.Ser301Phe	p.S301F	ENST00000342788	NM_005235.2	301	tCc/tTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546878	9546878	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs759137024		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	65	637	0	ENST00000353224.5:c.1144T>G	p.Leu382Val	p.L382V	ENST00000353224	NM_177990.2	382	Ttg/Gtg																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30253760	30253760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746342082		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	106	558	0	ENST00000307677.4:c.694C>T	p.Arg232Trp	p.R232W	ENST00000307677	NM_138578.1	232	Cgg/Tgg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31387976	31387976	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	72	344	2	ENST00000328111.2:c.1777G>T	p.Glu593Ter	p.E593*	ENST00000328111	NM_006892.3	593	Gag/Tag																																																																														
TOP1	7150	MSKCC	GRCh37	20	39746816	39746816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	148	527	1	ENST00000361337.2:c.1830G>T	p.Glu610Asp	p.E610D	ENST00000361337	NM_003286.2	610	gaG/gaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730799	40730799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	199	678	0	ENST00000373198.4:c.3736G>T	p.Glu1246Ter	p.E1246*	ENST00000373198	NM_133170.3	1246	Gaa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514525	41514525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	70	595	0	ENST00000373198.4:c.136G>A	p.Ala46Thr	p.A46T	ENST00000373198	NM_133170.3	46	Gct/Act																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62293223	62293223	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	255	731	0	ENST00000482936.1:c.322A>G	p.Lys108Glu	p.K108E	ENST00000482936		108	Aag/Gag																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321662	62321662	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	130	679	0	ENST00000482936.1:c.2281C>T	p.Pro761Ser	p.P761S	ENST00000482936		761	Ccc/Tcc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36421159	36421159	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	185	438	0	ENST00000300305.3:c.38A>G	p.Tyr13Cys	p.Y13C	ENST00000300305		13	tAc/tGc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656980	45656980	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1399685576		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	239	718	2	ENST00000407780.3:c.176C>T	p.Ser59Leu	p.S59L	ENST00000407780	NM_001283052.1	59	tCg/tTg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45658337	45658337	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	226	671	0	ENST00000407780.3:c.49C>T	p.Arg17Ter	p.R17*	ENST00000407780	NM_001283052.1	17	Cga/Tga																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091826	29091826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	45	361	1	ENST00000328354.6:c.1131G>T	p.Glu377Asp	p.E377D	ENST00000328354	NM_007194.3	377	gaG/gaT																																																																														
EP300	2033	MSKCC	GRCh37	22	41533751	41533751	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs926253992		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	80	484	0	ENST00000263253.7:c.1717G>A	p.Glu573Lys	p.E573K	ENST00000263253	NM_001429.3	573	Gaa/Aaa																																																																														
PPARG	5468	MSKCC	GRCh37	3	12447433	12447433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	244	607	1	ENST00000287820.6:c.672G>T	p.Glu224Asp	p.E224D	ENST00000287820	NM_015869.4	224	gaG/gaT																																																																														
RAF1	5894	MSKCC	GRCh37	3	12633275	12633275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	210	574	0	ENST00000251849.4:c.1125G>T	p.Lys375Asn	p.K375N	ENST00000251849	NM_002880.3	375	aaG/aaT																																																																														
MLH1	4292	MSKCC	GRCh37	3	37050314	37050315	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	29	284	0	ENST00000231790.2:c.469dup	p.Tyr157LeufsTer15	p.Y157Lfs*15	ENST00000231790	NM_000249.3	155	ctt/cTtt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37092134	37092134	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	81	305	0	ENST00000231790.2:c.2261A>C	p.Glu754Ala	p.E754A	ENST00000231790	NM_000249.3	754	gAg/gCg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165772	47165772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	71	467	0	ENST00000409792.3:c.354G>T	p.Met118Ile	p.M118I	ENST00000409792	NM_014159.6	118	atG/atT																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927489	49927489	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	77	608	0	ENST00000296474.3:c.3815C>A	p.Ser1272Ter	p.S1272*	ENST00000296474	NM_002447.2	1272	tCa/tAa																																																																														
MITF	4286	MSKCC	GRCh37	3	70008491	70008491	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	61	425	0	ENST00000352241.4:c.1081G>T	p.Glu361Ter	p.E361*	ENST00000352241	NM_198159.2	361	Gaa/Taa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72881596	72881596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	62	380	0	ENST00000325599.8:c.523G>A	p.Asp175Asn	p.D175N	ENST00000325599	NM_018130.2	175	Gat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89156959	89156959	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141456190		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	188	681	1	ENST00000336596.2:c.61G>A	p.Glu21Lys	p.E21K	ENST00000336596	NM_005233.5	21	Gaa/Aaa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259116	89259116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	52	400	0	ENST00000336596.2:c.260T>C	p.Val87Ala	p.V87A	ENST00000336596	NM_005233.5	87	gTc/gCc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448525	89448525	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	73	448	0	ENST00000336596.2:c.1489A>C	p.Ser497Arg	p.S497R	ENST00000336596	NM_005233.5	497	Agt/Cgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462381	89462381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	87	594	0	ENST00000336596.2:c.1853C>A	p.Ala618Asp	p.A618D	ENST00000336596	NM_005233.5	618	gCc/gAc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200066	128200066	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	115	884	0	ENST00000341105.2:c.1239C>A	p.Cys413Ter	p.C413*	ENST00000341105	NM_032638.4	413	tgC/tgA																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670295	134670295	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	103	506	0	ENST00000398015.3:c.206A>C	p.Asn69Thr	p.N69T	ENST00000398015	NM_004441.4	69	aAc/aCc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898765	134898765	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777467287		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	36	452	0	ENST00000398015.3:c.1823G>A	p.Arg608Gln	p.R608Q	ENST00000398015	NM_004441.4	608	cGg/cAg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920428	134920428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	120	688	0	ENST00000398015.3:c.2243G>T	p.Arg748Met	p.R748M	ENST00000398015	NM_004441.4	748	aGg/aTg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474682	138474682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	51	457	1	ENST00000289153.2:c.311C>A	p.Pro104His	p.P104H	ENST00000289153	NM_006219.2	104	cCt/cAt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474703	138474703	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1467994756		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	66	428	0	ENST00000289153.2:c.290G>A	p.Arg97Gln	p.R97Q	ENST00000289153	NM_006219.2	97	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142188970	142188970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	20	121	0	ENST00000350721.4:c.6277C>A	p.Leu2093Ile	p.L2093I	ENST00000350721	NM_001184.3	2093	Cta/Ata																																																																														
ATR	545	MSKCC	GRCh37	3	142268340	142268340	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770645649		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	16	141	0	ENST00000350721.4:c.3152G>A	p.Arg1051His	p.R1051H	ENST00000350721	NM_001184.3	1051	cGt/cAt																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169999725	169999725	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	50	305	0	ENST00000295797.4:c.1036C>T	p.Arg346Ter	p.R346*	ENST00000295797	NM_002740.5	346	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916719	178916719	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs777956032		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	43	292	0	ENST00000263967.3:c.106T>C	p.Cys36Arg	p.C36R	ENST00000263967	NM_006218.2	36	Tgc/Cgc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431079	181431079	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	113	672	0	ENST00000325404.1:c.931A>G	p.Thr311Ala	p.T311A	ENST00000325404	NM_003106.3	311	Aca/Gca																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190867	185190867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	104	768	1	ENST00000265026.3:c.1748G>T	p.Arg583Leu	p.R583L	ENST00000265026	NM_004721.4	583	cGa/cTa																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504989	186504989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	34	369	0	ENST00000323963.5:c.845C>T	p.Thr282Met	p.T282M	ENST00000323963		282	aCg/aTg																																																																														
BCL6	604	MSKCC	GRCh37	3	187447188	187447188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	135	722	0	ENST00000232014.4:c.1005G>T	p.Gln335His	p.Q335H	ENST00000232014	NM_001130845.1	335	caG/caT																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127368	55127368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	74	584	0	ENST00000257290.5:c.156G>T	p.Glu52Asp	p.E52D	ENST00000257290	NM_006206.4	52	gaG/gaT																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139736	55139736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	107	492	2	ENST00000257290.5:c.1397C>T	p.Ala466Val	p.A466V	ENST00000257290	NM_006206.4	466	gCc/gTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161404	55161404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	74	534	1	ENST00000257290.5:c.3235G>T	p.Asp1079Tyr	p.D1079Y	ENST00000257290	NM_006206.4	1079	Gac/Tac																																																																														
KIT	3815	MSKCC	GRCh37	4	55592196	55592196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	28	363	0	ENST00000288135.5:c.1520C>T	p.Ala507Val	p.A507V	ENST00000288135	NM_000222.2	507	gCa/gTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55946236	55946236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	108	474	0	ENST00000263923.4:c.3943G>T	p.Asp1315Tyr	p.D1315Y	ENST00000263923	NM_002253.2	1315	Gac/Tac																																																																														
KDR	3791	MSKCC	GRCh37	4	55948169	55948169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	51	415	0	ENST00000263923.4:c.3802G>A	p.Glu1268Lys	p.E1268K	ENST00000263923	NM_002253.2	1268	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55961000	55961002	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs1394396368		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	77	559	0	ENST00000263923.4:c.2938_2940del	p.Glu980del	p.E980del	ENST00000263923	NM_002253.2	980	GAG/-																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286248	66286248	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	21	244	0	ENST00000273854.3:c.1438A>C	p.Ile480Leu	p.I480L	ENST00000273854	NM_004439.5	480	Att/Ctt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467460	66467460	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	49	361	0	ENST00000273854.3:c.809A>C	p.Glu270Ala	p.E270A	ENST00000273854	NM_004439.5	270	gAa/gCa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467882	66467882	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	45	365	0	ENST00000273854.3:c.387A>T	p.Glu129Asp	p.E129D	ENST00000273854	NM_004439.5	129	gaA/gaT																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99802261	99802261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	12	121	0	ENST00000280892.6:c.632C>T	p.Pro211Leu	p.P211L	ENST00000280892	NM_001130678.1	211	cCa/cTa																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99806092	99806092	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	10	94	0	ENST00000280892.6:c.580G>T	p.Glu194Ter	p.E194*	ENST00000280892	NM_001130678.1	194	Gaa/Taa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003288	143003288	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	179	540	0	ENST00000262992.4:c.2538A>C	p.Lys846Asn	p.K846N	ENST00000262992	NM_001101669.1	846	aaA/aaC																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143033767	143033767	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	54	420	0	ENST00000262992.4:c.2204A>C	p.Glu735Ala	p.E735A	ENST00000262992	NM_001101669.1	735	gAa/gCa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143114280	143114280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	32	349	1	ENST00000262992.4:c.1141C>T	p.Leu381Phe	p.L381F	ENST00000262992	NM_001101669.1	381	Ctt/Ttt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143352409	143352409	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	114	485	0	ENST00000262992.4:c.4G>T	p.Glu2Ter	p.E2*	ENST00000262992	NM_001101669.1	2	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251927	153251927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	139	395	0	ENST00000281708.4:c.1079G>T	p.Arg360Ile	p.R360I	ENST00000281708	NM_033632.3	360	aGa/aTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524982	187524982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	121	626	0	ENST00000441802.2:c.10698G>T	p.Lys3566Asn	p.K3566N	ENST00000441802	NM_005245.3	3566	aaG/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532563	187532563	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	33	282	0	ENST00000441802.2:c.9830A>C	p.Lys3277Thr	p.K3277T	ENST00000441802	NM_005245.3	3277	aAa/aCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539635	187539635	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	32	381	0	ENST00000441802.2:c.8105A>C	p.Lys2702Thr	p.K2702T	ENST00000441802	NM_005245.3	2702	aAa/aCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540227	187540227	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770932444		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	66	465	0	ENST00000441802.2:c.7513G>A	p.Ala2505Thr	p.A2505T	ENST00000441802	NM_005245.3	2505	Gct/Act																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542524	187542524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	28	443	0	ENST00000441802.2:c.5216G>T	p.Gly1739Val	p.G1739V	ENST00000441802	NM_005245.3	1739	gGa/gTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542552	187542552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	61	444	0	ENST00000441802.2:c.5188T>G	p.Leu1730Val	p.L1730V	ENST00000441802	NM_005245.3	1730	Ttg/Gtg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557332	187557332	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764891067		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	44	619	0	ENST00000441802.2:c.4030G>A	p.Glu1344Lys	p.E1344K	ENST00000441802	NM_005245.3	1344	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628649	187628649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	142	622	0	ENST00000441802.2:c.2333C>A	p.Ser778Tyr	p.S778Y	ENST00000441802	NM_005245.3	778	tCt/tAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1282613	1282613	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886039438		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	105	767	3	ENST00000310581.5:c.1700C>T	p.Thr567Met	p.T567M	ENST00000310581	NM_198253.2	567	aCg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1294616	1294616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	96	473	0	ENST00000310581.5:c.385G>A	p.Asp129Asn	p.D129N	ENST00000310581	NM_198253.2	129	Gac/Aac																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31401571	31401571	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	81	487	0	ENST00000344624.3:c.4093G>T	p.Glu1365Ter	p.E1365*	ENST00000344624		1365	Gag/Tag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950237	38950237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766110639		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	60	461	0	ENST00000357387.3:c.3713G>A	p.Arg1238Gln	p.R1238Q	ENST00000357387	NM_152756.3	1238	cGa/cAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56170881	56170881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	85	322	0	ENST00000399503.3:c.1709G>A	p.Gly570Asp	p.G570D	ENST00000399503	NM_005921.1	570	gGc/gAc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56180553	56180553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	27	252	0	ENST00000399503.3:c.3882G>T	p.Glu1294Asp	p.E1294D	ENST00000399503	NM_005921.1	1294	gaG/gaT																																																																														
MSH3	4437	MSKCC	GRCh37	5	79961170	79961170	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1354731566		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	51	352	0	ENST00000265081.6:c.567A>C	p.Gln189His	p.Q189H	ENST00000265081	NM_002439.4	189	caA/caC																																																																														
RASA1	5921	MSKCC	GRCh37	5	86682686	86682686	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	12	147	0	ENST00000274376.6:c.2891A>T	p.Lys964Ile	p.K964I	ENST00000274376	NM_002890.2	964	aAa/aTa																																																																														
APC	324	MSKCC	GRCh37	5	112163693	112163693	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1432714177		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	20	274	0	ENST00000257430.4:c.1616A>G	p.Asp539Gly	p.D539G	ENST00000257430	NM_000038.5	539	gAc/gGc																																																																														
APC	324	MSKCC	GRCh37	5	112173445	112173445	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	30	327	0	ENST00000257430.4:c.2154T>G	p.Ile718Met	p.I718M	ENST00000257430	NM_000038.5	718	atT/atG																																																																														
APC	324	MSKCC	GRCh37	5	112177390	112177390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	50	256	0	ENST00000257430.4:c.6099C>A	p.Asp2033Glu	p.D2033E	ENST00000257430	NM_000038.5	2033	gaC/gaA																																																																														
APC	324	MSKCC	GRCh37	5	112178901	112178901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	94	360	0	ENST00000257430.4:c.7610C>A	p.Ser2537Tyr	p.S2537Y	ENST00000257430	NM_000038.5	2537	tCt/tAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915730	131915730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	30	124	0	ENST00000265335.6:c.728C>A	p.Ser243Tyr	p.S243Y	ENST00000265335		243	tCc/tAc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131939681	131939681	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060501936		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	97	279	1	ENST00000265335.6:c.2467C>T	p.Arg823Ter	p.R823*	ENST00000265335		823	Cga/Tga																																																																														
RAD50	10111	MSKCC	GRCh37	5	131972851	131972851	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	100	296	0	ENST00000265335.6:c.3434A>C	p.Lys1145Thr	p.K1145T	ENST00000265335		1145	aAa/aCa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131977950	131977950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	113	370	0	ENST00000265335.6:c.3833G>A	p.Gly1278Glu	p.G1278E	ENST00000265335		1278	gGa/gAa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524540	176524540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148143006		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	117	966	0	ENST00000292408.4:c.2272C>T	p.Arg758Cys	p.R758C	ENST00000292408	NM_213647.1	758	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176639124	176639124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	74	549	0	ENST00000439151.2:c.3724G>T	p.Ala1242Ser	p.A1242S	ENST00000439151	NM_022455.4	1242	Gcc/Tcc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176662922	176662922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	35	312	0	ENST00000439151.2:c.3897G>T	p.Lys1299Asn	p.K1299N	ENST00000439151	NM_022455.4	1299	aaG/aaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721900	176721900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	79	571	0	ENST00000439151.2:c.7531G>A	p.Asp2511Asn	p.D2511N	ENST00000439151	NM_022455.4	2511	Gat/Aat																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046717	180046717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	135	848	3	ENST00000261937.6:c.2595C>A	p.Phe865Leu	p.F865L	ENST00000261937	NM_182925.4	865	ttC/ttA																																																																														
FLT4	2324	MSKCC	GRCh37	5	180049741	180049741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	69	649	0	ENST00000261937.6:c.1647C>A	p.Phe549Leu	p.F549L	ENST00000261937	NM_182925.4	549	ttC/ttA																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052971	180052971	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753074837		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	173	873	0	ENST00000261937.6:c.1319G>A	p.Arg440His	p.R440H	ENST00000261937	NM_182925.4	440	cGc/cAc																																																																														
IRF4	3662	MSKCC	GRCh37	6	393180	393180	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1403333371		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	99	423	0	ENST00000380956.4:c.28G>A	p.Gly10Arg	p.G10R	ENST00000380956	NM_001195286.1	10	Gga/Aga																																																																														
IRF4	3662	MSKCC	GRCh37	6	393295	393295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	96	613	0	ENST00000380956.4:c.143G>T	p.Ser48Ile	p.S48I	ENST00000380956	NM_001195286.1	48	aGc/aTc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481495	20481495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	48	407	0	ENST00000346618.3:c.564G>T	p.Lys188Asn	p.K188N	ENST00000346618	NM_001949.4	188	aaG/aaT																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286963	33286963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	134	699	0	ENST00000374542.5:c.1974G>T	p.Lys658Asn	p.K658N	ENST00000374542	NM_001141970.1	658	aaG/aaT																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652161	36652161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	155	780	0	ENST00000244741.5:c.283C>T	p.Pro95Ser	p.P95S	ENST00000244741	NM_000389.4	95	Cct/Tct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955066	93955066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	25	244	0	ENST00000369303.4:c.2832C>A	p.Phe944Leu	p.F944L	ENST00000369303	NM_004440.3	944	ttC/ttA																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553523	106553523	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs768991091		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	78	490	0	ENST00000369096.4:c.1488C>A	p.Phe496Leu	p.F496L	ENST00000369096	NM_001198.3	496	ttC/ttA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681175	117681175	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	31	226	0	ENST00000368508.3:c.3446-1G>T		p.X1149_splice	ENST00000368508	NM_002944.2	1149																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708992	117708992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	86	554	0	ENST00000368508.3:c.1965G>T	p.Lys655Asn	p.K655N	ENST00000368508	NM_002944.2	655	aaG/aaT																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192443	138192443	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	45	345	0	ENST00000237289.4:c.79G>T	p.Glu27Ter	p.E27*	ENST00000237289	NM_001270507.1	27	Gaa/Taa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196921	138196921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	61	375	0	ENST00000237289.4:c.583C>T	p.His195Tyr	p.H195Y	ENST00000237289	NM_001270507.1	195	Cac/Tac																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138197194	138197194	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	54	493	0	ENST00000237289.4:c.696T>G	p.Ile232Met	p.I232M	ENST00000237289	NM_001270507.1	232	atT/atG																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199663	138199663	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751096907		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	126	526	0	ENST00000237289.4:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000237289	NM_001270507.1	361	Gag/Aag																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983143	149983143	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	40	402	0	ENST00000253339.5:c.3115T>G	p.Phe1039Val	p.F1039V	ENST00000253339		1039	Ttt/Gtt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527985	157527985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	117	681	1	ENST00000346085.5:c.5710C>A	p.Pro1904Thr	p.P1904T	ENST00000346085	NM_020732.3	1904	Ccc/Acc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6037000	6037000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	81	547	0	ENST00000265849.7:c.760G>T	p.Glu254Ter	p.E254*	ENST00000265849	NM_000535.5	254	Gag/Tag																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426880	6426880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	34	215	0	ENST00000356142.4:c.73A>G	p.Thr25Ala	p.T25A	ENST00000356142	NM_018890.3	25	Acc/Gcc																																																																														
HGF	3082	MSKCC	GRCh37	7	81331924	81331924	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	13	227	0	ENST00000222390.5:c.2160T>G	p.Ile720Met	p.I720M	ENST00000222390	NM_000601.4	720	atT/atG																																																																														
HGF	3082	MSKCC	GRCh37	7	81381456	81381456	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	66	333	0	ENST00000222390.5:c.605A>G	p.Asp202Gly	p.D202G	ENST00000222390	NM_000601.4	202	gAc/gGc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545817	106545817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	78	264	0	ENST00000359195.3:c.3294G>T	p.Glu1098Asp	p.E1098D	ENST00000359195	NM_002649.2	1098	gaG/gaT																																																																														
MET	4233	MSKCC	GRCh37	7	116395491	116395491	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	133	434	0	ENST00000397752.3:c.1784A>C	p.Lys595Thr	p.K595T	ENST00000397752	NM_000245.2	595	aAa/aCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140482826	140482826	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1249895723		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	52	439	1	ENST00000288602.6:c.1309C>T	p.Arg437Ter	p.R437*	ENST00000288602	NM_004333.4	437	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140549911	140549911	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	44	150	0	ENST00000288602.6:c.240G>T	p.Glu80Asp	p.E80D	ENST00000288602	NM_004333.4	80	gaG/gaT																																																																														
EZH2	2146	MSKCC	GRCh37	7	148512614	148512614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	64	336	0	ENST00000320356.2:c.1530G>T	p.Lys510Asn	p.K510N	ENST00000320356	NM_004456.4	510	aaG/aaT																																																																														
RHEB	6009	MSKCC	GRCh37	7	151168675	151168675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	29	138	0	ENST00000262187.5:c.292G>T	p.Val98Phe	p.V98F	ENST00000262187	NM_005614.3	98	Gtt/Ttt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151851523	151851523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564716850		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	55	271	0	ENST00000262189.6:c.11968G>A	p.Asp3990Asn	p.D3990N	ENST00000262189	NM_170606.2	3990	Gat/Aat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859545	151859545	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	143	494	0	ENST00000262189.6:c.11117A>C	p.Lys3706Thr	p.K3706T	ENST00000262189	NM_170606.2	3706	aAg/aCg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859881	151859881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	49	397	0	ENST00000262189.6:c.10781C>A	p.Ser3594Tyr	p.S3594Y	ENST00000262189	NM_170606.2	3594	tCt/tAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878597	151878597	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	103	691	0	ENST00000262189.6:c.6348T>G	p.Phe2116Leu	p.F2116L	ENST00000262189	NM_170606.2	2116	ttT/ttG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879463	151879463	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	159	491	0	ENST00000262189.6:c.5482G>T	p.Glu1828Ter	p.E1828*	ENST00000262189	NM_170606.2	1828	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151902253	151902253	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1230955155		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	47	284	0	ENST00000262189.6:c.3899G>T	p.Arg1300Ile	p.R1300I	ENST00000262189	NM_170606.2	1300	aGa/aTa																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345765	152345765	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	33	232	0	ENST00000359321.1:c.805T>G	p.Phe269Val	p.F269V	ENST00000359321	NM_005431.1	269	Ttt/Gtt																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345941	152345941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	112	479	0	ENST00000359321.1:c.629C>A	p.Ser210Tyr	p.S210Y	ENST00000359321	NM_005431.1	210	tCt/tAt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162155	38162155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	60	537	0	ENST00000317025.8:c.2561G>T	p.Ser854Ile	p.S854I	ENST00000317025	NM_023034.1	854	aGc/aTc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38184323	38184323	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	54	404	1	ENST00000317025.8:c.1633A>C	p.Ile545Leu	p.I545L	ENST00000317025	NM_023034.1	545	Att/Ctt																																																																														
LYN	4067	MSKCC	GRCh37	8	56860194	56860194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	49	531	1	ENST00000519728.1:c.196G>T	p.Asp66Tyr	p.D66Y	ENST00000519728	NM_002350.3	66	Gac/Tac																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005898	69005898	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	83	506	0	ENST00000288368.4:c.2309A>C	p.Lys770Thr	p.K770T	ENST00000288368	NM_024870.2	770	aAa/aCa																																																																														
NBN	4683	MSKCC	GRCh37	8	90949283	90949283	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	52	97	0	ENST00000265433.3:c.2205A>C	p.Lys735Asn	p.K735N	ENST00000265433	NM_002485.4	735	aaA/aaC																																																																														
NBN	4683	MSKCC	GRCh37	8	90960115	90960115	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	22	92	0	ENST00000265433.3:c.1851A>C	p.Glu617Asp	p.E617D	ENST00000265433	NM_002485.4	617	gaA/gaC																																																																														
NBN	4683	MSKCC	GRCh37	8	90976728	90976728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	17	247	0	ENST00000265433.3:c.904C>A	p.Leu302Ile	p.L302I	ENST00000265433	NM_002485.4	302	Ctt/Att																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054592	5054592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749863048		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	38	171	0	ENST00000381652.3:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000381652	NM_004972.3	215	cGa/cAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054847	5054847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	45	286	0	ENST00000381652.3:c.899G>T	p.Arg300Ile	p.R300I	ENST00000381652	NM_004972.3	300	aGa/aTa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080241	5080241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	20	173	0	ENST00000381652.3:c.2144G>T	p.Arg715Ile	p.R715I	ENST00000381652	NM_004972.3	715	aGa/aTa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090529	5090529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	34	124	0	ENST00000381652.3:c.2845G>T	p.Asp949Tyr	p.D949Y	ENST00000381652	NM_004972.3	949	Gat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389311	8389311	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	64	582	0	ENST00000356435.5:c.4307T>G	p.Phe1436Cys	p.F1436C	ENST00000356435		1436	tTt/tGt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636736	8636736	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	39	388	0	ENST00000356435.5:c.173A>G	p.Asn58Ser	p.N58S	ENST00000356435		58	aAc/aGc																																																																														
TEK	7010	MSKCC	GRCh37	9	27168553	27168553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	74	324	0	ENST00000380036.4:c.425C>A	p.Ser142Tyr	p.S142Y	ENST00000380036	NM_000459.3	142	tCt/tAt																																																																														
TEK	7010	MSKCC	GRCh37	9	27209157	27209157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	51	489	0	ENST00000380036.4:c.2614G>A	p.Glu872Lys	p.E872K	ENST00000380036	NM_000459.3	872	Gaa/Aaa																																																																														
TEK	7010	MSKCC	GRCh37	9	27220118	27220118	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	141	643	0	ENST00000380036.4:c.3175A>G	p.Lys1059Glu	p.K1059E	ENST00000380036	NM_000459.3	1059	Aag/Gag																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412450	80412450	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	121	324	0	ENST00000286548.4:c.591A>C	p.Gln197His	p.Q197H	ENST00000286548	NM_002072.3	197	caA/caC																																																																														
SYK	6850	MSKCC	GRCh37	9	93641115	93641115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	123	605	0	ENST00000375746.1:c.1461G>T	p.Glu487Asp	p.E487D	ENST00000375746	NM_001174167.1	487	gaG/gaT																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209563	98209563	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	194	677	0	ENST00000331920.6:c.3975T>G	p.Ile1325Met	p.I1325M	ENST00000331920	NM_000264.3	1325	atT/atG																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248084	110248084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	139	527	0	ENST00000374672.4:c.1388G>A	p.Arg463Gln	p.R463Q	ENST00000374672	NM_004235.4	463	cGa/cAa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249320	110249320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	176	932	0	ENST00000374672.4:c.1253G>A	p.Arg418Gln	p.R418Q	ENST00000374672	NM_004235.4	418	cGa/cAa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915817	127915817	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	51	415	0	ENST00000373547.4:c.664A>C	p.Asn222His	p.N222H	ENST00000373547	NM_002721.4	222	Aat/Cat																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127933444	127933444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758410873		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	87	437	0	ENST00000373547.4:c.91G>A	p.Val31Ile	p.V31I	ENST00000373547	NM_002721.4	31	Gtt/Att																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128420009	128420009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	56	649	0	ENST00000265960.3:c.419C>T	p.Ser140Leu	p.S140L	ENST00000265960	NM_001006617.1	140	tCg/tTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135800979	135800979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	82	301	0	ENST00000298552.3:c.358C>A	p.Leu120Ile	p.L120I	ENST00000298552	NM_001162426.1	120	Ctc/Atc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300872	137300872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	57	723	1	ENST00000481739.1:c.517G>A	p.Asp173Asn	p.D173N	ENST00000481739	NM_002957.4	173	Gac/Aac																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300927	137300927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	141	763	1	ENST00000481739.1:c.572G>A	p.Arg191His	p.R191H	ENST00000481739	NM_002957.4	191	cGc/cAc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328320	137328320	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	80	628	0	ENST00000481739.1:c.1249A>G	p.Lys417Glu	p.K417E	ENST00000481739	NM_002957.4	417	Aag/Gag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317450	1317450	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	143	748	1				ENST00000381566																																																																																	
CRLF2	64109	MSKCC	GRCh37	X	1317520	1317520	+	downstream_gene_variant	3'Flank	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	94	687	0				ENST00000381566																																																																																	
BCOR	54880	MSKCC	GRCh37	X	39931652	39931652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	243	669	1	ENST00000378444.4:c.2947G>A	p.Glu983Lys	p.E983K	ENST00000378444	NM_001123385.1	983	Gaa/Aaa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933044	39933044	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	129	786	0	ENST00000378444.4:c.1555G>T	p.Glu519Ter	p.E519*	ENST00000378444	NM_001123385.1	519	Gag/Tag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39935760	39935760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745470688		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	132	494	0	ENST00000378444.4:c.112G>A	p.Ala38Thr	p.A38T	ENST00000378444	NM_001123385.1	38	Gct/Act																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941876	44941876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	29	127	0	ENST00000377967.4:c.3200C>T	p.Ser1067Leu	p.S1067L	ENST00000377967	NM_021140.2	1067	tCg/tTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038892	47038892	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	201	712	0	ENST00000329236.7:c.668A>G	p.Asp223Gly	p.D223G	ENST00000329236	NM_001204466.1	223	gAc/gGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044481	47044481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	87	806	0	ENST00000329236.7:c.1744C>T	p.Arg582Cys	p.R582C	ENST00000329236	NM_001204466.1	582	Cgc/Tgc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225127	53225127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	103	701	0	ENST00000375401.3:c.3091G>A	p.Ala1031Thr	p.A1031T	ENST00000375401	NM_004187.3	1031	Gcc/Acc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53254069	53254069	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	58	566	0	ENST00000375401.3:c.3G>T	p.Met1?	p.M1?	ENST00000375401	NM_004187.3	1	atG/atT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411619	63411619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	98	825	0	ENST00000330258.3:c.1548G>T	p.Glu516Asp	p.E516D	ENST00000330258	NM_152424.3	516	gaG/gaT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411660	63411660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	133	825	0	ENST00000330258.3:c.1507G>A	p.Asp503Asn	p.D503N	ENST00000330258	NM_152424.3	503	Gat/Aat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411957	63411957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	83	826	0	ENST00000330258.3:c.1210G>T	p.Asp404Tyr	p.D404Y	ENST00000330258	NM_152424.3	404	Gat/Tat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412398	63412398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	104	866	0	ENST00000330258.3:c.769G>T	p.Asp257Tyr	p.D257Y	ENST00000330258	NM_152424.3	257	Gat/Tat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412638	63412638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	67	716	0	ENST00000330258.3:c.529C>A	p.Arg177Ser	p.R177S	ENST00000330258	NM_152424.3	177	Cgc/Agc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412669	63412669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	80	691	0	ENST00000330258.3:c.498G>T	p.Lys166Asn	p.K166N	ENST00000330258	NM_152424.3	166	aaG/aaT																																																																														
AR	367	MSKCC	GRCh37	X	66766581	66766581	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	126	782	0	ENST00000374690.3:c.1593C>A	p.Tyr531Ter	p.Y531*	ENST00000374690	NM_000044.3	531	taC/taA																																																																														
MED12	9968	MSKCC	GRCh37	X	70344631	70344631	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	145	606	0	ENST00000374080.3:c.1992A>C	p.Glu664Asp	p.E664D	ENST00000374080		664	gaA/gaC																																																																														
MED12	9968	MSKCC	GRCh37	X	70352768	70352768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868164882		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	246	781	1	ENST00000374080.3:c.4489G>A	p.Glu1497Lys	p.E1497K	ENST00000374080		1497	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76855041	76855041	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	72	285	0	ENST00000373344.5:c.5795A>C	p.Lys1932Thr	p.K1932T	ENST00000373344	NM_000489.3	1932	aAa/aCa																																																																														
ATRX	546	MSKCC	GRCh37	X	76889074	76889074	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	48	214	0	ENST00000373344.5:c.4936A>C	p.Lys1646Gln	p.K1646Q	ENST00000373344	NM_000489.3	1646	Aaa/Caa																																																																														
ATRX	546	MSKCC	GRCh37	X	76912132	76912132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	35	197	0	ENST00000373344.5:c.4132G>T	p.Asp1378Tyr	p.D1378Y	ENST00000373344	NM_000489.3	1378	Gat/Tat																																																																														
ATRX	546	MSKCC	GRCh37	X	76937078	76937079	+	stop_gained	Nonsense_Mutation	DNP	GT	GT	AC			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	69	322	0	ENST00000373344.5:c.3669_3670inv	p.Gln1224Ter	p.Q1224*	ENST00000373344	NM_000489.3	1223	gaACag/gaGTag																																																																														
ATRX	546	MSKCC	GRCh37	X	76937269	76937269	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	14	198	0	ENST00000373344.5:c.3479A>C	p.Glu1160Ala	p.E1160A	ENST00000373344	NM_000489.3	1160	gAa/gCa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937880	76937880	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	93	291	0	ENST00000373344.5:c.2868A>C	p.Lys956Asn	p.K956N	ENST00000373344	NM_000489.3	956	aaA/aaC																																																																														
ATRX	546	MSKCC	GRCh37	X	76937936	76937936	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	50	399	0	ENST00000373344.5:c.2812A>C	p.Lys938Gln	p.K938Q	ENST00000373344	NM_000489.3	938	Aaa/Caa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938973	76938973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	34	368	0	ENST00000373344.5:c.1775C>A	p.Pro592His	p.P592H	ENST00000373344	NM_000489.3	592	cCt/cAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76954115	76954115	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	29	131	0	ENST00000373344.5:c.136A>G	p.Lys46Glu	p.K46E	ENST00000373344	NM_000489.3	46	Aaa/Gaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76972719	76972719	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	50	267	0	ENST00000373344.5:c.22G>T	p.Glu8Ter	p.E8*	ENST00000373344	NM_000489.3	8	Gaa/Taa																																																																														
BTK	695	MSKCC	GRCh37	X	100608930	100608930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	76	587	0	ENST00000308731.7:c.1678C>T	p.Pro560Ser	p.P560S	ENST00000308731	NM_000061.2	560	Cca/Tca																																																																														
BTK	695	MSKCC	GRCh37	X	100611221	100611221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	79	539	0	ENST00000308731.7:c.1385G>A	p.Gly462Asp	p.G462D	ENST00000308731	NM_000061.2	462	gGc/gAc																																																																														
XIAP	331	MSKCC	GRCh37	X	123025136	123025136	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	26	74	0	ENST00000355640.3:c.1026T>G	p.Ile342Met	p.I342M	ENST00000355640		342	atT/atG																																																																														
STAG2	10735	MSKCC	GRCh37	X	123182883	123182883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	28	83	0	ENST00000218089.9:c.848A>G	p.Asn283Ser	p.N283S	ENST00000218089	NM_001042749.1	283	aAt/aGt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123196773	123196773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	66	338	0	ENST00000218089.9:c.1660A>G	p.Lys554Glu	p.K554E	ENST00000218089	NM_001042749.1	554	Aag/Gag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197739	123197739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	29	365	0	ENST00000218089.9:c.1863G>T	p.Glu621Asp	p.E621D	ENST00000218089	NM_001042749.1	621	gaG/gaT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197803	123197803	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	35	312	0	ENST00000218089.9:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000218089	NM_001042749.1	643	Gag/Tag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123210287	123210287	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	74	230	0	ENST00000218089.9:c.2639A>C	p.Asn880Thr	p.N880T	ENST00000218089	NM_001042749.1	880	aAt/aCt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215253	123215253	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	35	189	0	ENST00000218089.9:c.2799A>T	p.Glu933Asp	p.E933D	ENST00000218089	NM_001042749.1	933	gaA/gaT																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504063	123504064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	25	243	0	ENST00000371139.4:c.245dup	p.Asn82LysfsTer22	p.N82Kfs*22	ENST00000371139	NM_001114937.2	80	ata/atAa																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123505209	123505209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	16	135	0	ENST00000371139.4:c.355G>A	p.Glu119Lys	p.E119K	ENST00000371139	NM_001114937.2	119	Gaa/Aaa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738769	145738769	+	coding_sequence_variant	Missense_Mutation	SNP	G	G	A	rs751427839		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	254	867	1	ENST00000428558.2:c.2295+1C>T		p.*765*	ENST00000428558	NM_004260.3																																																																																
SRC	6714	MSKCC	GRCh37	20	36030940	36030940	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186207963		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	66	824	0	ENST00000358208.4:c.1219G>A	p.Asp407Asn	p.D407N	ENST00000358208		407	Gac/Aac																																																																														
NF1	4763	MSKCC	GRCh37	17	29508774	29508774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	27	115	0	ENST00000358273.4:c.701T>C	p.Leu234Pro	p.L234P	ENST00000358273	NM_001042492.2	234	cTg/cCg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868310	45868310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201294521		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	124	738	0	ENST00000391945.4:c.467G>A	p.Arg156Gln	p.R156Q	ENST00000391945	NM_000400.3	156	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112176558	112176558	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773178712		P-0043596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	49	371	0	ENST00000257430.4:c.5267C>T	p.Ser1756Phe	p.S1756F	ENST00000257430	NM_000038.5	1756	tCt/tTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	153	453	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	62	286	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	19	113	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	79	444	0	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	56	277	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030323	180030323	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745546499		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	162	506	2	ENST00000261937.6:c.3961C>T	p.Arg1321Trp	p.R1321W	ENST00000261937	NM_182925.4	1321	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	153	622	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739026	145739026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781121286		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	110	515	0	ENST00000428558.2:c.2129G>A	p.Arg710His	p.R710H	ENST00000428558	NM_004260.3	710	cGc/cAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660536	67660536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	85	381	0	ENST00000264010.4:c.1436G>A	p.Arg479His	p.R479H	ENST00000264010	NM_006565.3	479	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	69	331	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905546	50905546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144979965		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	168	675	2	ENST00000440232.2:c.674G>A	p.Arg225His	p.R225H	ENST00000440232	NM_002691.3	225	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108115594	108115594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs730881336		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	52	239	0	ENST00000278616.4:c.742C>T	p.Arg248Ter	p.R248*	ENST00000278616	NM_000051.3	248	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	107	392	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720741	89720741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs371387815		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	11	84	0	ENST00000371953.3:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000371953	NM_000314.4	298	Caa/Taa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946150	13946150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	100	404	0	ENST00000405192.2:c.946C>T	p.Gln316Ter	p.Q316*	ENST00000405192	NM_001163147.1	316	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782292		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	83	330	1	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557643	95557643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	71	390	0	ENST00000343455.3:c.5424G>T	p.Met1808Ile	p.M1808I	ENST00000343455	NM_177438.2	1808	atG/atT																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31381363	31381363	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138596278		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	116	276	0	ENST00000328111.2:c.1088G>A	p.Arg363His	p.R363H	ENST00000328111	NM_006892.3	363	cGt/cAt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386436	31386436	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs577581342		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	103	487	0	ENST00000328111.2:c.1661C>T	p.Thr554Met	p.T554M	ENST00000328111	NM_006892.3	554	aCg/aTg																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	98	328	1	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546787	9546787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	69	290	0	ENST00000353224.5:c.1235C>T	p.Pro412Leu	p.P412L	ENST00000353224	NM_177990.2	412	cCg/cTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30132982	30132982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750421913		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	121	442	2	ENST00000331968.5:c.619G>A	p.Val207Ile	p.V207I	ENST00000331968	NM_002742.2	207	Gtt/Att																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214891	36214891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201094135		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	169	649	1	ENST00000222270.7:c.3317G>A	p.Arg1106Gln	p.R1106Q	ENST00000222270	NM_014727.1	1106	cGg/cAg																																																																														
ATM	472	MSKCC	GRCh37	11	108168077	108168077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	27	200	0	ENST00000278616.4:c.4973C>T	p.Ala1658Val	p.A1658V	ENST00000278616	NM_000051.3	1658	gCa/gTa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223707	53223707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	154	720	2	ENST00000375401.3:c.3652C>T	p.Arg1218Cys	p.R1218C	ENST00000375401	NM_004187.3	1218	Cgc/Tgc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457615	67457615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	127	542	1	ENST00000327367.4:c.425G>A	p.Arg142His	p.R142H	ENST00000327367	NM_005902.3	142	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176639097	176639097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771467409		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	103	366	2	ENST00000439151.2:c.3697C>T	p.Arg1233Trp	p.R1233W	ENST00000439151	NM_022455.4	1233	Cgg/Tgg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632584	3632584	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372921011		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	187	624	0	ENST00000294008.3:c.5264C>T	p.Ala1755Val	p.A1755V	ENST00000294008	NM_032444.2	1755	gCg/gTg																																																																														
RB1	5925	MSKCC	GRCh37	13	49039143	49039143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs529366765		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	36	107	0	ENST00000267163.4:c.2221C>T	p.Arg741Cys	p.R741C	ENST00000267163	NM_000321.2	741	Cgt/Tgt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574405	95574405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	25	146	0	ENST00000343455.3:c.2462G>A	p.Arg821His	p.R821H	ENST00000343455	NM_177438.2	821	cGc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518854	187518854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1263240063		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	76	339	0	ENST00000441802.2:c.12350C>T	p.Ser4117Leu	p.S4117L	ENST00000441802	NM_005245.3	4117	tCg/tTg																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45799087	45799087	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs373766973		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	37	621	0	ENST00000372115.3:c.304C>T	p.Arg102Trp	p.R102W	ENST00000372115	NM_001048171.1	102	Cgg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928852	44928852	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750754452		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	72	268	0	ENST00000377967.4:c.1952C>T	p.Ser651Leu	p.S651L	ENST00000377967	NM_021140.2	651	tCg/tTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250398	10250398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1010743136		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	109	446	0	ENST00000340748.4:c.3854G>A	p.Arg1285His	p.R1285H	ENST00000340748		1285	cGc/cAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134884858	134884858	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774975718		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	118	385	0	ENST00000398015.3:c.1634C>T	p.Ser545Leu	p.S545L	ENST00000398015	NM_004441.4	545	tCg/tTg																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158521	26158521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	100	433	0	ENST00000289316.2:c.124G>A	p.Val42Met	p.V42M	ENST00000289316	NM_138720.2	42	Gtg/Atg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187719	11187719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767904339		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	107	469	0	ENST00000361445.4:c.6178C>T	p.Arg2060Trp	p.R2060W	ENST00000361445	NM_004958.3	2060	Cgg/Tgg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18280045	18280045	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1463551736		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	83	354	0	ENST00000222254.8:c.2128G>A	p.Val710Ile	p.V710I	ENST00000222254	NM_005027.3	710	Gtc/Atc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3644477	3644477	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs760126773		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	163	608	0	ENST00000294008.3:c.2137C>T	p.Arg713Ter	p.R713*	ENST00000294008	NM_032444.2	713	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37865601	37865601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745921471		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	132	675	0	ENST00000269571.5:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000269571		157	cGg/cAg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549404	21549404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753026198		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	105	432	0	ENST00000382592.4:c.2872C>T	p.Arg958Cys	p.R958C	ENST00000382592	NM_014572.2	958	Cgc/Tgc																																																																														
TET2	54790	MSKCC	GRCh37	4	106155386	106155386	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1238868376		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	49	386	0	ENST00000380013.4:c.287G>A	p.Arg96His	p.R96H	ENST00000380013	NM_001127208.2	96	cGc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030588	48030588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749843		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	64	299	0	ENST00000234420.5:c.3202C>T	p.Arg1068Ter	p.R1068*	ENST00000234420	NM_000179.2	1068	Cga/Tga																																																																														
CARM1	10498	MSKCC	GRCh37	19	11031345	11031345	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752773089		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	145	663	0	ENST00000327064.4:c.1345G>A	p.Asp449Asn	p.D449N	ENST00000327064	NM_199141.1	449	Gac/Aac																																																																														
JAK1	3716	MSKCC	GRCh37	1	65348959	65348959	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	36	202	0	ENST00000342505.4:c.205+1G>A		p.X69_splice	ENST00000342505	NM_002227.2	69																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120491632	120491632	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	58	221	0	ENST00000256646.2:c.2597A>G	p.Gln866Arg	p.Q866R	ENST00000256646	NM_024408.3	866	cAa/cGa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851297	156851297	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	124	568	0	ENST00000524377.1:c.2254T>C	p.Cys752Arg	p.C752R	ENST00000524377	NM_002529.3	752	Tgc/Cgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448461	49448461	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748173147		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	125	511	1	ENST00000301067.7:c.250C>T	p.Arg84Cys	p.R84C	ENST00000301067	NM_003482.3	84	Cgc/Tgc																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281578	49281578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	85	523	0	ENST00000282018.3:c.625G>A	p.Gly209Ser	p.G209S	ENST00000282018	NM_020377.2	209	Ggc/Agc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610284	81610284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	67	362	0	ENST00000298171.2:c.1882G>A	p.Val628Met	p.V628M	ENST00000298171	NM_000369.2	628	Gtg/Atg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590579	95590579	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	36	175	0	ENST00000343455.3:c.1330G>T	p.Gly444Ter	p.G444*	ENST00000343455	NM_177438.2	444	Gga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830900	72830900	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199667071		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	82	422	0	ENST00000268489.5:c.5681A>G	p.Asp1894Gly	p.D1894G	ENST00000268489	NM_006885.3	1894	gAc/gGc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341535	89341535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	121	466	0	ENST00000301030.4:c.7535G>A	p.Arg2512Gln	p.R2512Q	ENST00000301030	NM_001256183.1	2512	cGg/cAg																																																																														
YES1	7525	MSKCC	GRCh37	18	747962	747962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	66	442	0	ENST00000314574.4:c.428C>T	p.Pro143Leu	p.P143L	ENST00000314574	NM_005433.3	143	cCg/cTg																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793028	33793028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	59	212	0	ENST00000498907.2:c.293C>T	p.Thr98Met	p.T98M	ENST00000498907	NM_004364.3	98	aCg/aTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098968	178098968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	39	169	0	ENST00000397062.3:c.77A>G	p.Gln26Arg	p.Q26R	ENST00000397062	NM_006164.4	26	cAa/cGa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933653	49933653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	122	666	0	ENST00000296474.3:c.2624C>A	p.Pro875His	p.P875H	ENST00000296474	NM_002447.2	875	cCt/cAt																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204788	128204788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	172	698	1	ENST00000341105.2:c.653C>T	p.Thr218Met	p.T218M	ENST00000341105	NM_032638.4	218	aCg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947800	178947800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	38	190	0	ENST00000263967.3:c.2675C>T	p.Ala892Val	p.A892V	ENST00000263967	NM_006218.2	892	gCa/gTa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146787	185146787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	84	437	0	ENST00000265026.3:c.418C>G	p.Pro140Ala	p.P140A	ENST00000265026	NM_004721.4	140	Cct/Gct																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356212	66356212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1385284578		P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	83	442	0	ENST00000273854.3:c.1285G>A	p.Val429Met	p.V429M	ENST00000273854	NM_004439.5	429	Gtg/Atg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910738	29910738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	55	565	0	ENST00000376809.5:c.278C>T	p.Ala93Val	p.A93V	ENST00000376809	NM_002116.7	93	gCc/gTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152007112	152007112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	96	381	0	ENST00000262189.6:c.788G>A	p.Cys263Tyr	p.C263Y	ENST00000262189	NM_170606.2	263	tGc/tAc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205367	38205367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	90	552	0	ENST00000317025.8:c.323C>A	p.Pro108His	p.P108H	ENST00000317025	NM_023034.1	108	cCc/cAc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907019	101907019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	28	146	0	ENST00000374994.4:c.979C>T	p.Pro327Ser	p.P327S	ENST00000374994	NM_004612.2	327	Cca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	175	280	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0043615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	118	213	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0043615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	61	240	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117739	70117739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	166	571	0	ENST00000245479.2:c.210del	p.Val71CysfsTer39	p.V71Cfs*39	ENST00000245479	NM_000346.3	69	ttC/tt																																																																														
ATM	472	MSKCC	GRCh37	11	108159759	108159759	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	35	198	0	ENST00000278616.4:c.4165A>G	p.Thr1389Ala	p.T1389A	ENST00000278616	NM_000051.3	1389	Aca/Gca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577572	7577573	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0043615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	211	512	0	ENST00000269305.4:c.706_708dup	p.Tyr236dup	p.Y236dup	ENST00000269305	NM_001126112.2	236	-/TAC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	50	477	1	ENST00000269305.4:c.766A>C	p.Thr256Pro	p.T256P	ENST00000269305	NM_001126112.2	256	Aca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0043633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	216	704	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
NF1	4763	MSKCC	GRCh37	17	29670026	29670026	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs1131691114		P-0043633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	146	222	0	ENST00000358273.4:c.7063-1G>T		p.X2355_splice	ENST00000358273	NM_001042492.2	2355																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25463186	25463186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	176	595	0	ENST00000264709.3:c.2307C>G	p.Ile769Met	p.I769M	ENST00000264709	NM_175629.2	769	atC/atG																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0043642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	33	528	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444304	49444304	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	168	924	1	ENST00000301067.7:c.3067C>T	p.Gln1023Ter	p.Q1023*	ENST00000301067	NM_003482.3	1023	Cag/Tag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018161	48018161	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1060502893		P-0043642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	100	579	1	ENST00000234420.5:c.356T>G	p.Phe119Cys	p.F119C	ENST00000234420	NM_000179.2	119	tTc/tGc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239706	53239706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	121	686	1	ENST00000375401.3:c.1636G>A	p.Glu546Lys	p.E546K	ENST00000375401	NM_004187.3	546	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	178	421	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0043645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	161	747	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76909656	76909656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	21	407	1	ENST00000373344.5:c.4249C>T	p.Arg1417Trp	p.R1417W	ENST00000373344	NM_000489.3	1417	Cgg/Tgg																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363246	40363250	+	frameshift_variant	Frame_Shift_Del	DEL	CGCAG	CGCAG	-			P-0043645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	188	810	0	ENST00000397332.2:c.979_983del	p.Leu327PhefsTer39	p.L327Ffs*39	ENST00000397332	NM_001033082.2	327	CTGCGt/t																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0043657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	29	526	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0043657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	14	332	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	142	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299048	15299048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs114207045		P-0043660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	37	564	1	ENST00000263388.2:c.1490C>T	p.Ser497Leu	p.S497L	ENST00000263388	NM_000435.2	497	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	246	704	0	ENST00000269305.4:c.659del	p.Tyr220LeufsTer27	p.Y220Lfs*27	ENST00000269305	NM_001126112.2	220	tAt/tt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971163	21971185	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCAGCAGCAGCTCCGCCACTC	GAGCAGCAGCAGCTCCGCCACTC	-			P-0043660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	33	378	0	ENST00000304494.5:c.173_195del	p.Arg58ProfsTer54	p.R58Pfs*54	ENST00000304494	NM_000077.4	58	cGAGTGGCGGAGCTGCTGCTGCTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971163	21971185	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCAGCAGCAGCTCCGCCACTC	GAGCAGCAGCAGCTCCGCCACTC	-			P-0043660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	33	378	0	ENST00000304494.5:c.173_195del	p.Arg58ProfsTer54	p.R58Pfs*54	ENST00000304494	NM_000077.4	58	cGAGTGGCGGAGCTGCTGCTGCTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971163	21971185	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCAGCAGCAGCTCCGCCACTC	GAGCAGCAGCAGCTCCGCCACTC	-			P-0043660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	33	378	0	ENST00000304494.5:c.173_195del	p.Arg58ProfsTer54	p.R58Pfs*54	ENST00000304494	NM_000077.4	58	cGAGTGGCGGAGCTGCTGCTGCTC/c																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0043667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	25	464	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0043667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	45	589	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0043667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	39	387	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467646	66467646	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	21	299	0	ENST00000273854.3:c.623del	p.Lys208ArgfsTer60	p.K208Rfs*60	ENST00000273854	NM_004439.5	208	aAg/ag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913275		P-0043667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	33	491	1	ENST00000263967.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaT																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs113954997		P-0043667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	35	423	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089727	27089727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	48	583	0	ENST00000324856.7:c.2683C>T	p.Gln895Ter	p.Q895*	ENST00000324856	NM_006015.4	895	Caa/Taa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845412	42845412	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	34	794	0	ENST00000398585.3:c.850A>C	p.Asn284His	p.N284H	ENST00000398585	NM_001135099.1	284	Aac/Cac																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519927	66519927	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	44	338	0	ENST00000358598.2:c.410T>A	p.Leu137Gln	p.L137Q	ENST00000358598	NM_212471.2	137	cTg/cAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	162	261	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT	rs121913227		P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	126	274	0	ENST00000288602.6:c.1798_1799delinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295674	212295674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1362156940		P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	118	282	0	ENST00000342788.4:c.2639G>A	p.Gly880Glu	p.G880E	ENST00000342788	NM_005235.2	880	gGa/gAa																																																																														
MPL	4352	MSKCC	GRCh37	1	43804242	43804242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	135	394	0	ENST00000372470.3:c.242C>T	p.Ser81Phe	p.S81F	ENST00000372470	NM_005373.2	81	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488718	212488718	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267599191		P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	150	387	0	ENST00000342788.4:c.2131C>T	p.Arg711Cys	p.R711C	ENST00000342788	NM_005235.2	711	Cgt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719882	18719882	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	79	210	0	ENST00000266497.5:c.3780-1G>A		p.X1260_splice	ENST00000266497		1260																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164508	47164508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201756643		P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	102	235	0	ENST00000409792.3:c.1618C>T	p.Arg540Ter	p.R540*	ENST00000409792	NM_014159.6	540	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295230	+	upstream_gene_variant	5'Flank	ONP	GGG	GGG	AGA			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	140	349	0				ENST00000310581	NM_198253.2																																																																																
EPHA7	2045	MSKCC	GRCh37	6	94068079	94068079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375147203		P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	107	259	0	ENST00000369303.4:c.883C>T	p.Arg295Cys	p.R295C	ENST00000369303	NM_004440.3	295	Cgt/Tgt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40359593	40359593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	205	394	0	ENST00000293328.3:c.2060C>T	p.Pro687Leu	p.P687L	ENST00000293328	NM_012448.3	687	cCc/cTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779194	3779194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	164	452	0	ENST00000262367.5:c.5854C>T	p.Pro1952Ser	p.P1952S	ENST00000262367	NM_004380.2	1952	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995601	68995601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	250	381	0	ENST00000288368.4:c.2005C>T	p.Leu669Phe	p.L669F	ENST00000288368	NM_024870.2	669	Ctt/Ttt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528682	157528682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	272	447	0	ENST00000346085.5:c.6407C>T	p.Ser2136Leu	p.S2136L	ENST00000346085	NM_020732.3	2136	tCg/tTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435523	18435523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	63	173	0	ENST00000266497.5:c.508G>A	p.Gly170Arg	p.G170R	ENST00000266497		170	Gga/Aga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247492	71247492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	34	472	1	ENST00000318789.4:c.41C>T	p.Ser14Leu	p.S14L	ENST00000318789	NM_032682.5	14	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949069	151949069	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776295921		P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	202	367	0	ENST00000262189.6:c.1576C>T	p.Arg526Cys	p.R526C	ENST00000262189	NM_170606.2	526	Cgt/Tgt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936395	49936395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	217	562	0	ENST00000296474.3:c.1453T>C	p.Tyr485His	p.Y485H	ENST00000296474	NM_002447.2	485	Tat/Cat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678458	88678458	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747624231		P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	162	571	0	ENST00000360948.2:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000360948	NM_001012338.2	360	Gag/Aag																																																																														
WT1	7490	MSKCC	GRCh37	11	32414220	32414220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769499906		P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	95	328	0	ENST00000332351.3:c.1331G>A	p.Arg444Lys	p.R444K	ENST00000332351	NM_024426.4	444	aGa/aAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857920	9857920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	213	456	0	ENST00000330684.3:c.3481G>A	p.Gly1161Arg	p.G1161R	ENST00000330684	NM_001134407.1	1161	Ggg/Agg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645276	67645276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	220	561	2	ENST00000264010.4:c.541G>A	p.Gly181Arg	p.G181R	ENST00000264010	NM_006565.3	181	Ggg/Agg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845507	72845507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	180	505	1	ENST00000268489.5:c.3833C>A	p.Ala1278Glu	p.A1278E	ENST00000268489	NM_006885.3	1278	gCa/gAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89335025	89335025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	71	148	0	ENST00000301030.4:c.7853C>T	p.Ala2618Val	p.A2618V	ENST00000301030	NM_001256183.1	2618	gCc/gTc																																																																														
RRAS	6237	MSKCC	GRCh37	19	50143244	50143244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	195	406	2	ENST00000246792.3:c.112G>A	p.Gly38Ser	p.G38S	ENST00000246792	NM_006270.3	38	Ggc/Agc																																																																														
INHA	3623	MSKCC	GRCh37	2	220439994	220439994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	277	825	0	ENST00000243786.2:c.847C>T	p.Pro283Ser	p.P283S	ENST00000243786	NM_002191.3	283	Cct/Tct																																																																														
TET2	54790	MSKCC	GRCh37	4	106156336	106156336	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	225	231	0	ENST00000380013.4:c.1237C>G	p.Pro413Ala	p.P413A	ENST00000380013	NM_001127208.2	413	Cca/Gca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540457	187540457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	118	255	0	ENST00000441802.2:c.7283C>T	p.Ser2428Phe	p.S2428F	ENST00000441802	NM_005245.3	2428	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557191	187557191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	155	339	0	ENST00000441802.2:c.4171T>C	p.Phe1391Leu	p.F1391L	ENST00000441802	NM_005245.3	1391	Ttt/Ctt																																																																														
TERT	7015	MSKCC	GRCh37	5	1293562	1293562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	204	791	0	ENST00000310581.5:c.1439C>T	p.Ser480Phe	p.S480F	ENST00000310581	NM_198253.2	480	tCc/tTc																																																																														
MET	4233	MSKCC	GRCh37	7	116415027	116415027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	238	409	1	ENST00000397752.3:c.3121G>A	p.Asp1041Asn	p.D1041N	ENST00000397752	NM_000245.2	1041	Gat/Aat																																																																														
SMO	6608	MSKCC	GRCh37	7	128851529	128851529	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1385995572		P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1766	227	641	0	ENST00000249373.3:c.1854G>A	p.Trp618Ter	p.W618*	ENST00000249373	NM_005631.4	618	tgG/tgA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104697	69104697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148366673		P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	182	454	0	ENST00000288368.4:c.4541C>T	p.Ser1514Phe	p.S1514F	ENST00000288368	NM_024870.2	1514	tCc/tTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937842	76937842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	205	196	0	ENST00000373344.5:c.2906T>C	p.Leu969Pro	p.L969P	ENST00000373344	NM_000489.3	969	cTa/cCa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36215968	36215970	+	frameshift_variant	Frame_Shift_Del	DEL	CGC	CGC	TG			P-0043691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	224	682	2	ENST00000222270.7:c.3508_3510delinsTG	p.Arg1170TrpfsTer12	p.R1170Wfs*12	ENST00000222270	NM_014727.1	1170	CGC/TG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	190	595	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0043698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	55	607	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112175399	112175400	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0043698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	92	202	0	ENST00000257430.4:c.4110_4111del	p.Pro1372ThrfsTer2	p.P1372Tfs*2	ENST00000257430	NM_000038.5	1370	AAa/a																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175212	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	22	151	0	ENST00000257430.4:c.3924del	p.Glu1309LysfsTer12	p.E1309Kfs*12	ENST00000257430	NM_000038.5	1307	atA/at																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197785	66197785	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	31	292	0	ENST00000273854.3:c.2914G>T	p.Glu972Ter	p.E972*	ENST00000273854	NM_004439.5	972	Gaa/Taa																																																																														
PARK2	0	MSKCC	GRCh37	6	162622285	162622285	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0043698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	62	238	0	ENST00000366898.1:c.413-1G>T		p.X138_splice	ENST00000366898	NM_004562.2	138																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	16	261	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0043721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	22	270	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0043729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	224	468	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0043729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	767	465	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
VHL	7428	MSKCC	GRCh37	3	10188196	10188196	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs869025637		P-0043779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	171	464	0	ENST00000256474.2:c.341-2A>G		p.X114_splice	ENST00000256474	NM_000551.3	114																																																																															
MPL	4352	MSKCC	GRCh37	1	43804954	43804954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	139	400	0	ENST00000372470.3:c.404C>T	p.Pro135Leu	p.P135L	ENST00000372470	NM_005373.2	135	cCc/cTc																																																																														
BARD1	580	MSKCC	GRCh37	2	215645944	215645944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	57	360	0	ENST00000260947.4:c.654G>C	p.Trp218Cys	p.W218C	ENST00000260947	NM_000465.2	218	tgG/tgC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161753	47161753	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	82	313	0	ENST00000409792.3:c.4373del	p.Gln1458ArgfsTer25	p.Q1458Rfs*25	ENST00000409792	NM_014159.6	1458	cAg/cg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584560	52584561	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0043779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	191	681	0	ENST00000394830.3:c.4452_4453del	p.Pro1485HisfsTer23	p.P1485Hfs*23	ENST00000394830	NM_018313.4	1484	acACcc/accc																																																																														
KIT	3815	MSKCC	GRCh37	4	55561910	55561911	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0043779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	46	260	0	ENST00000288135.5:c.302_303del	p.His101ArgfsTer11	p.H101Rfs*11	ENST00000288135	NM_000222.2	100	aaACac/aaac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0043780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	61	247	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0043780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	147	478	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0043814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	44	395	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106476	27106476	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	60	439	0	ENST00000324856.7:c.6088del	p.Thr2030LeufsTer12	p.T2030Lfs*12	ENST00000324856	NM_006015.4	2029	ctA/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692988	89692989	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	35	314	0	ENST00000371953.3:c.473dup	p.Arg159LysfsTer21	p.R159Kfs*21	ENST00000371953	NM_000314.4	158	gta/gTta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	245	671	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	5485	584	59	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	59	385	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	137	385	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144118	11144118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	243	806	0	ENST00000344626.4:c.3699G>T	p.Met1233Ile	p.M1233I	ENST00000344626	NM_003072.3	1233	atG/atT																																																																														
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	122	326	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874636	35874637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1384901919		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	137	299	0	ENST00000303115.3:c.799dup	p.Arg267LysfsTer3	p.R267Kfs*3	ENST00000303115	NM_002185.3	264	-/A																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711367	114711367	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	91	192	1	ENST00000543371.1:c.381+1G>C		p.X127_splice	ENST00000543371	NM_001198531.1	127																																																																															
ATM	472	MSKCC	GRCh37	11	108139211	108139214	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	139	599	0	ENST00000278616.4:c.2716_2719del	p.Leu906ValfsTer2	p.L906Vfs*2	ENST00000278616	NM_000051.3	905	TGTTtg/tg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115111574	115112303	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAAGTCACTCAACATCTCTGGGCGTCTTCGCCTTCATCTGTAAAGTGGAGGTGATAATAGTACCCCTGAAGGGTTAGGTCAAATGAGTCAATACAGAGCAAGCACTTAGAAGAATGCCTGAAAGTAAGTGCTGTGTCCAGCTGTTATCTTTGTTACTACCTATCTACTCTGCTGGAAACAGCCTTTAACTTCGGAAAAATTTTAAAGATTTTTGGGGTGAATGGGGAGAATGAAGTCATAATAACTCCATGAGCTAAGCCTTGAACCCGGTAATGGCTCAGTAAAAATTATTACAGCTACTAGGCCAAAGGGATCGGGTGAGGGTCTGCTGGCAAAGGACAGGGAAACTGGACGAAAGGTGGAAAGACTGGTGGAGGCAGGAAGAAGGATCCATACCTGAGAGGCCAGGACGTGCTGCTGGAGGTGGAAGGGCAGGGTGGCCGCGGACGCCCCGGACAGTCCCTGCGCCGCAGCGGCAGAGGCCATGGCCGTGGAATCCAGGCCCGAGACACCGGTGGAGGCCCCAGAAACCGTGGCCAGGAGGGGACCCATGCCAGCGGCCGCCATGCTGGAGAAGGCGCCCCCCATGGCAAACTGGCTGGGGTGCAGGAAGAGCGGGTGCCCGTTGAAGAACTGTTGGCCCGCCAGGCCCGGGGCGAAGCCGAGGCCAGGCAGGGGGCCCTGGGCCAGGTGCGCGGCGGCCGCGTCCGTCTGCACCGTGAGCGGCGCG	CAAGTCACTCAACATCTCTGGGCGTCTTCGCCTTCATCTGTAAAGTGGAGGTGATAATAGTACCCCTGAAGGGTTAGGTCAAATGAGTCAATACAGAGCAAGCACTTAGAAGAATGCCTGAAAGTAAGTGCTGTGTCCAGCTGTTATCTTTGTTACTACCTATCTACTCTGCTGGAAACAGCCTTTAACTTCGGAAAAATTTTAAAGATTTTTGGGGTGAATGGGGAGAATGAAGTCATAATAACTCCATGAGCTAAGCCTTGAACCCGGTAATGGCTCAGTAAAAATTATTACAGCTACTAGGCCAAAGGGATCGGGTGAGGGTCTGCTGGCAAAGGACAGGGAAACTGGACGAAAGGTGGAAAGACTGGTGGAGGCAGGAAGAAGGATCCATACCTGAGAGGCCAGGACGTGCTGCTGGAGGTGGAAGGGCAGGGTGGCCGCGGACGCCCCGGACAGTCCCTGCGCCGCAGCGGCAGAGGCCATGGCCGTGGAATCCAGGCCCGAGACACCGGTGGAGGCCCCAGAAACCGTGGCCAGGAGGGGACCCATGCCAGCGGCCGCCATGCTGGAGAAGGCGCCCCCCATGGCAAACTGGCTGGGGTGCAGGAAGAGCGGGTGCCCGTTGAAGAACTGTTGGCCCGCCAGGCCCGGGGCGAAGCCGAGGCCAGGCAGGGGGCCCTGGGCCAGGTGCGCGGCGGCCGCGTCCGTCTGCACCGTGAGCGGCGCG	-			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	27	3	0	ENST00000257566.3:c.1437_1770+396del		p.X479_splice	ENST00000257566	NM_016569.3	479																																																																															
LATS2	26524	MSKCC	GRCh37	13	21555725	21555725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778450722		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1447	79	711	0	ENST00000382592.4:c.2545C>T	p.Arg849Trp	p.R849W	ENST00000382592	NM_014572.2	849	Cgg/Tgg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986961	36986961	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057524869		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	99	538	0	ENST00000354822.5:c.728G>A	p.Arg243His	p.R243H	ENST00000354822	NM_001079668.2	243	cGc/cAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67646018	67646018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	62	428	2	ENST00000264010.4:c.946C>T	p.His316Tyr	p.H316Y	ENST00000264010	NM_006565.3	316	Cac/Tac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219050	36219050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1459799356		P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	95	786	2	ENST00000222270.7:c.4549C>T	p.Arg1517Ter	p.R1517*	ENST00000222270	NM_014727.1	1517	Cga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467950	66467950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	144	290	2	ENST00000273854.3:c.319C>A	p.Gln107Lys	p.Q107K	ENST00000273854	NM_004439.5	107	Cag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295245	1295247	+	upstream_gene_variant	5'Flank	DEL	CCC	CCC	-			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	128	180	1				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876465	35876465	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	261	574	2	ENST00000303115.3:c.1257T>G	p.Phe419Leu	p.F419L	ENST00000303115	NM_002185.3	419	ttT/ttG																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	44	524	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	13	335	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	145	453	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	24	274	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	28	502	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519757		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	10	198	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762770988		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	107	567	4	ENST00000396946.4:c.1663dup	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742463	17742463	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	34	483	0	ENST00000250003.3:c.650del	p.Pro217ArgfsTer33	p.P217Rfs*33	ENST00000250003	NM_002478.4	215	ggC/gg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973547	15973547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143125039		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	83	271	0	ENST00000268712.3:c.4445G>A	p.Arg1482Gln	p.R1482Q	ENST00000268712	NM_006311.3	1482	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	73	333	0	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	43	255	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	213	662	1	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909218		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	97	398	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	114	347	0	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																														
NF1	4763	MSKCC	GRCh37	17	29654553	29654553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876657714		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	68	237	0	ENST00000358273.4:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000358273	NM_001042492.2	1769	Cga/Tga																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790819	89790819	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	95	459	6	ENST00000336032.3:c.211del	p.Gln71SerfsTer112	p.Q71Sfs*112	ENST00000336032	NM_006813.2	69	aCc/ac																																																																														
STAT3	6774	MSKCC	GRCh37	17	40497609	40497609	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs964892419		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	191	577	2	ENST00000264657.5:c.340C>T	p.Arg114Cys	p.R114C	ENST00000264657	NM_139276.2	114	Cgc/Tgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	143	578	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	100	211	0	ENST00000274335.5:c.1678G>C	p.Asp560His	p.D560H	ENST00000274335		560	Gac/Cac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991722	72991722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	15	167	1	ENST00000268489.5:c.2323G>A	p.Ala775Thr	p.A775T	ENST00000268489	NM_006885.3	775	Gcg/Acg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273980	10273980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	130	672	2	ENST00000330684.3:c.289G>A	p.Gly97Ser	p.G97S	ENST00000330684	NM_001134407.1	97	Ggc/Agc																																																																														
PARP1	142	MSKCC	GRCh37	1	226555271	226555271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	76	438	0	ENST00000366794.5:c.2316G>T	p.Glu772Asp	p.E772D	ENST00000366794	NM_001618.3	772	gaG/gaT																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670657	134670657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1441537601		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	158	517	1	ENST00000398015.3:c.568C>T	p.Arg190Cys	p.R190C	ENST00000398015	NM_004441.4	190	Cgt/Tgt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939111	36939111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	160	665	0	ENST00000361632.4:c.598G>T	p.Gly200Cys	p.G200C	ENST00000361632		200	Ggc/Tgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65321372	65321372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	47	454	0	ENST00000342505.4:c.1468G>T	p.Gly490Cys	p.G490C	ENST00000342505	NM_002227.2	490	Ggt/Tgt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138086	64138086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	30	537	1	ENST00000334205.4:c.2009G>A	p.Gly670Asp	p.G670D	ENST00000334205	NM_003942.2	670	gGc/gAc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466031	69466031	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	184	554	1	ENST00000227507.2:c.869T>A	p.Val290Glu	p.V290E	ENST00000227507	NM_053056.2	290	gTg/gAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822105	72822105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	105	421	3	ENST00000268489.5:c.10070del	p.Pro3357GlnfsTer128	p.P3357Qfs*128	ENST00000268489	NM_006885.3	3357	cCa/ca																																																																														
CIC	23152	MSKCC	GRCh37	19	42799006	42799006	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs754160310		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	205	707	1	ENST00000575354.2:c.4490A>G	p.Tyr1497Cys	p.Y1497C	ENST00000575354	NM_015125.3	1497	tAt/tGt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50921112	50921112	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1060501852		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	130	509	0	ENST00000440232.2:c.3232A>G	p.Ile1078Val	p.I1078V	ENST00000440232	NM_002691.3	1078	Atc/Gtc																																																																														
KDR	3791	MSKCC	GRCh37	4	55956166	55956166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	149	416	1	ENST00000263923.4:c.3149C>T	p.Ala1050Val	p.A1050V	ENST00000263923	NM_002253.2	1050	gCc/gTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176694571	176694571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	77	237	0	ENST00000439151.2:c.5155C>A	p.Leu1719Ile	p.L1719I	ENST00000439151	NM_022455.4	1719	Ctt/Att																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80343544	80343544	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs149046601		P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	77	313	0	ENST00000286548.4:c.775A>G	p.Ile259Val	p.I259V	ENST00000286548	NM_002072.3	259	Atc/Gtc																																																																														
ARAF	369	MSKCC	GRCh37	X	47422625	47422625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	52	433	0	ENST00000377045.4:c.97G>A	p.Val33Met	p.V33M	ENST00000377045	NM_001654.4	33	Gtg/Atg																																																																														
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0043949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	253	421	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982977	201982978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	320	569	0	ENST00000359651.3:c.829dup	p.Glu277GlyfsTer24	p.E277Gfs*24	ENST00000359651		276	tgg/tGgg																																																																														
FYN	2534	MSKCC	GRCh37	6	112029183	112029183	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs370983835		P-0043949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	100	341	0	ENST00000368678.4:c.385G>C	p.Glu129Gln	p.E129Q	ENST00000368678		129	Gag/Cag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197793	123197794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	205	203	0	ENST00000218089.9:c.1918dup	p.Cys640LeufsTer2	p.C640Lfs*2	ENST00000218089	NM_001042749.1	639	-/T																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085708	16085708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	65	585	0	ENST00000281043.3:c.884C>A	p.Thr295Asn	p.T295N	ENST00000281043	NM_005378.4	295	aCc/aAc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0043965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	32	217	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442040	52442040	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	73	572	1	ENST00000460680.1:c.309C>A	p.Cys103Ter	p.C103*	ENST00000460680	NM_004656.3	103	tgC/tgA																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71064705	71064706	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0043965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	38	331	0	ENST00000318789.4:c.968_969del	p.Phe323SerfsTer7	p.F323Sfs*7	ENST00000318789	NM_032682.5	323	tTT/t																																																																														
SYK	6850	MSKCC	GRCh37	9	93629466	93629466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	19	277	0	ENST00000375746.1:c.900G>T	p.Lys300Asn	p.K300N	ENST00000375746	NM_001174167.1	300	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587780074		P-0043992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	81	525	0	ENST00000269305.4:c.737T>C	p.Met246Thr	p.M246T	ENST00000269305	NM_001126112.2	246	aTg/aCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928226	178928226	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519872		P-0043992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	41	293	0	ENST00000263967.3:c.1412C>T	p.Pro471Leu	p.P471L	ENST00000263967	NM_006218.2	471	cCa/cTa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519963		P-0043992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	54	251	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871182	12871182	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs752620765		P-0043992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	24	277	0	ENST00000228872.4:c.409C>G	p.Pro137Ala	p.P137A	ENST00000228872	NM_004064.3	137	Ccg/Gcg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412365	139412365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	95	574	0	ENST00000277541.6:c.1280G>A	p.Gly427Asp	p.G427D	ENST00000277541	NM_017617.3	427	gGc/gAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640853	3640853	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117707719		P-0044010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	148	656	0	ENST00000294008.3:c.2786C>T	p.Pro929Leu	p.P929L	ENST00000294008	NM_032444.2	929	cCg/cTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781287	135781287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746304922		P-0044010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	162	480	0	ENST00000298552.3:c.1678G>A	p.Gly560Ser	p.G560S	ENST00000298552	NM_001162426.1	560	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574032	7574034	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	ONP	ATC	ATC	GAT			P-0044010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	269	456	1	ENST00000269305.4:c.994-1_995inv		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843727	151843728	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0044010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	48	308	0	ENST00000262189.6:c.13987_13988del	p.Leu4663ValfsTer19	p.L4663Vfs*19	ENST00000262189	NM_170606.2	4663	CTg/g																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399769	139399769	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	176	527	0	ENST00000277541.6:c.4579C>T	p.Gln1527Ter	p.Q1527*	ENST00000277541	NM_017617.3	1527	Cag/Tag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417632	139417632	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	65	657	0	ENST00000277541.6:c.412T>A	p.Cys138Ser	p.C138S	ENST00000277541	NM_017617.3	138	Tgc/Agc																																																																														
AR	367	MSKCC	GRCh37	X	66941797	66941797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	81	192	0	ENST00000374690.3:c.2441T>C	p.Phe814Ser	p.F814S	ENST00000374690	NM_000044.3	814	tTc/tCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	111	488	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535409	66535409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768337164		P-0044049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	34	249	0	ENST00000273854.3:c.52G>A	p.Gly18Ser	p.G18S	ENST00000273854	NM_004439.5	18	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101195	27101195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	109	499	1	ENST00000324856.7:c.4477C>T	p.Gln1493Ter	p.Q1493*	ENST00000324856	NM_006015.4	1493	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0044049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	37	590	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46267902	46267902	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs143016947		P-0044049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	113	326	0	ENST00000371998.3:c.2663A>G	p.Asn888Ser	p.N888S	ENST00000371998		888	aAt/aGt																																																																														
ATR	545	MSKCC	GRCh37	3	142180908	142180909	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0044049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	14	68	0	ENST00000350721.4:c.7065_7066del	p.Arg2356Ter	p.R2356*	ENST00000350721	NM_001184.3	2355	tcTCgt/tcgt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371885	55371885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	20	175	0	ENST00000297316.4:c.575C>T	p.Pro192Leu	p.P192L	ENST00000297316	NM_022454.3	192	cCg/cTg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504317		P-0044058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	168	420	1	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245115	46245116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	142	424	0	ENST00000334344.6:c.3211dup	p.Ser1071PhefsTer6	p.S1071Ffs*6	ENST00000334344	NM_152641.2	1070	cct/ccTt																																																																														
AXL	558	MSKCC	GRCh37	19	41754686	41754686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1338560133		P-0044058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	78	608	0	ENST00000301178.4:c.1672G>A	p.Asp558Asn	p.D558N	ENST00000301178	NM_021913.4	558	Gac/Aac																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121918457		P-0044065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	83	335	0	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518783	176518783	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199935139		P-0044065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	84	463	0	ENST00000292408.4:c.701G>A	p.Arg234His	p.R234H	ENST00000292408	NM_213647.1	234	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577527	7577527	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	316	530	3	ENST00000269305.4:c.754del	p.Leu252SerfsTer93	p.L252Sfs*93	ENST00000269305	NM_001126112.2	252	Ctc/tc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022769	31022769	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	79	451	1	ENST00000375687.4:c.2254G>C	p.Ala752Pro	p.A752P	ENST00000375687	NM_015338.5	752	Gct/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	204	567	0	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290180	15290180	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371437217		P-0044098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	224	695	0	ENST00000263388.2:c.3455C>T	p.Thr1152Met	p.T1152M	ENST00000263388	NM_000435.2	1152	aCg/aTg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0044098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	300	767	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289922	15289922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	289	744	0	ENST00000263388.2:c.3632C>T	p.Ser1211Leu	p.S1211L	ENST00000263388	NM_000435.2	1211	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	198	261	0				ENST00000310581	NM_198253.2																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15289995	15289995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	309	768	0	ENST00000263388.2:c.3559G>T	p.Gly1187Cys	p.G1187C	ENST00000263388	NM_000435.2	1187	Ggt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290202	15290202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	241	748	1	ENST00000263388.2:c.3433C>T	p.Leu1145Phe	p.L1145F	ENST00000263388	NM_000435.2	1145	Ctc/Ttc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047811	128047811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	109	462	0	ENST00000285398.2:c.510G>C	p.Leu170Phe	p.L170F	ENST00000285398	NM_000122.1	170	ttG/ttC																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067215	37067215	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	123	442	0	ENST00000231790.2:c.1126G>C	p.Asp376His	p.D376H	ENST00000231790	NM_000249.3	376	Gat/Cat																																																																														
ATR	545	MSKCC	GRCh37	3	142259791	142259791	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	171	519	0	ENST00000350721.4:c.3536G>C	p.Arg1179Thr	p.R1179T	ENST00000350721	NM_001184.3	1179	aGa/aCa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13940423	13940423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	176	335	0	ENST00000405192.2:c.1083G>T	p.Met361Ile	p.M361I	ENST00000405192	NM_001163147.1	361	atG/atT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0044103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	536	738	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0044103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	190	322	0	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112173374	112173374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	55	296	0	ENST00000257430.4:c.2083C>T	p.Gln695Ter	p.Q695*	ENST00000257430	NM_000038.5	695	Cag/Tag																																																																														
MSH3	4437	MSKCC	GRCh37	5	79950665	79950665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	291	287	0	ENST00000265081.6:c.119C>T	p.Ser40Phe	p.S40F	ENST00000265081	NM_002439.4	40	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	157	394	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337636	73337636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1376504733		P-0044118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	55	236	0	ENST00000377767.4:c.2080C>T	p.Pro694Ser	p.P694S	ENST00000377767	NM_014953.3	694	Cca/Tca																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42842599	42842599	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755712060		P-0044118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	121	828	2	ENST00000398585.3:c.1258G>A	p.Gly420Arg	p.G420R	ENST00000398585	NM_001135099.1	420	Ggg/Agg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	213	383	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	280	559	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210451	2210451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138206172		P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	60	981	0	ENST00000398665.3:c.1058C>T	p.Ala353Val	p.A353V	ENST00000398665	NM_032482.2	353	gCg/gTg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	90	627	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108206616	108206616	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1183442138		P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	201	353	0	ENST00000278616.4:c.8196C>G	p.Phe2732Leu	p.F2732L	ENST00000278616	NM_000051.3	2732	ttC/ttG																																																																														
PALB2	79728	MSKCC	GRCh37	16	23634318	23634318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	91	633	0	ENST00000261584.4:c.2968G>A	p.Glu990Lys	p.E990K	ENST00000261584	NM_024675.3	990	Gaa/Aaa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372093	55372093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	269	522	1	ENST00000297316.4:c.788del	p.Pro263ArgfsTer124	p.P263Rfs*124	ENST00000297316	NM_022454.3	261	ggC/gg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63526171	63526171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	82	742	0	ENST00000307078.5:c.2455G>C	p.Glu819Gln	p.E819Q	ENST00000307078	NM_004655.3	819	Gag/Cag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652057	36652058	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	396	1051	0	ENST00000244741.5:c.182dup	p.Asp62Ter	p.D62*	ENST00000244741	NM_000389.4	60	gag/gaGg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63700167	63700167	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	83	206	0	ENST00000279873.7:c.502G>C	p.Gly168Arg	p.G168R	ENST00000279873	NM_032199.2	168	Ggg/Cgg																																																																														
PGR	5241	MSKCC	GRCh37	11	100909939	100909939	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	242	442	0	ENST00000325455.5:c.2710G>C	p.Glu904Gln	p.E904Q	ENST00000325455	NM_001202474.3	904	Gaa/Caa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799384	88799384	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	185	334	0	ENST00000360948.2:c.1A>T	p.Met1?	p.M1?	ENST00000360948	NM_001012338.2	1	Atg/Ttg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781420	3781421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	368	707	2	ENST00000262367.5:c.4944_4945insT	p.Ile1649TyrfsTer11	p.I1649Yfs*11	ENST00000262367	NM_004380.2	1648	-/T																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892240	9892240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	66	539	0	ENST00000330684.3:c.2250C>G	p.Ile750Met	p.I750M	ENST00000330684	NM_001134407.1	750	atC/atG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827349	72827349	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	329	839	0	ENST00000268489.5:c.9232C>G	p.Gln3078Glu	p.Q3078E	ENST00000268489	NM_006885.3	3078	Caa/Gaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829131	72829131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	364	652	0	ENST00000268489.5:c.7450C>T	p.Pro2484Ser	p.P2484S	ENST00000268489	NM_006885.3	2484	Cct/Tct																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5218529	5218529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	331	857	0	ENST00000357368.4:c.3950C>A	p.Ser1317Ter	p.S1317*	ENST00000357368	NM_002850.3	1317	tCa/tAa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45858929	45858929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	100	821	0	ENST00000391945.4:c.1537G>A	p.Asp513Asn	p.D513N	ENST00000391945	NM_000400.3	513	Gat/Aat																																																																														
CUL3	8452	MSKCC	GRCh37	2	225365093	225365093	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs772779469		P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	50	379	0	ENST00000264414.4:c.1597G>C	p.Glu533Gln	p.E533Q	ENST00000264414	NM_003590.4	533	Gag/Cag																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256367	46256367	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs759276868		P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	245	413	0	ENST00000371998.3:c.595A>G	p.Met199Val	p.M199V	ENST00000371998		199	Atg/Gtg																																																																														
EP300	2033	MSKCC	GRCh37	22	41537116	41537116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	161	436	1	ENST00000263253.7:c.1943G>A	p.Arg648Gln	p.R648Q	ENST00000263253	NM_001429.3	648	cGa/cAa																																																																														
PPARG	5468	MSKCC	GRCh37	3	12393173	12393173	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	139	426	1	ENST00000287820.6:c.82G>A	p.Glu28Lys	p.E28K	ENST00000287820	NM_015869.4	28	Gaa/Aaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803599	1803610	+	inframe_deletion	In_Frame_Del	DEL	GCCGGCCAACCA	GCCGGCCAACCA	-			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	107	682	0	ENST00000260795.2:c.778_789del	p.Pro260_Gln263del	p.P260_Q263del	ENST00000260795		259	ctGCCGGCCAACCAg/ctg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1905942	1905942	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	217	588	0	ENST00000382895.3:c.598-1G>C		p.X200_splice	ENST00000382895	NM_133330.2	200																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361235	66361235	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	202	326	0	ENST00000273854.3:c.937T>A	p.Ser313Thr	p.S313T	ENST00000273854	NM_004439.5	313	Tca/Aca																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564449	86564449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	435	709	0	ENST00000274376.6:c.181C>G	p.Leu61Val	p.L61V	ENST00000274376	NM_002890.2	61	Ctg/Gtg																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346355	152346355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	254	597	0	ENST00000359321.1:c.215G>T	p.Gly72Val	p.G72V	ENST00000359321	NM_005431.1	72	gGt/gTt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396284	139396284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	554	955	0	ENST00000277541.6:c.5554G>A	p.Asp1852Asn	p.D1852N	ENST00000277541	NM_017617.3	1852	Gac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44920639	44920640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0044121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	247	244	0	ENST00000377967.4:c.1403_1404dup	p.Leu469ValfsTer2	p.L469Vfs*2	ENST00000377967	NM_021140.2	467	tgg/tgGTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0044142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	97	465	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	42	296	0				ENST00000310581	NM_198253.2																																																																																
VHL	7428	MSKCC	GRCh37	3	10191585	10191585	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TT			P-0044172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	97	559	0	ENST00000256474.2:c.578delinsTT	p.Asn193IlefsTer63	p.N193Ifs*63	ENST00000256474	NM_000551.3	193	aAt/aTTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	36	390	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	19	308	0				ENST00000310581	NM_198253.2																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157522485	157522485	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777745107		P-0044194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	11	695	0	ENST00000346085.5:c.4757C>T	p.Thr1586Met	p.T1586M	ENST00000346085	NM_020732.3	1586	aCg/aTg																																																																														
CBL	867	MSKCC	GRCh37	11	119170416	119170416	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	14	470	0	ENST00000264033.4:c.2646G>C	p.Gln882His	p.Q882H	ENST00000264033	NM_005188.3	882	caG/caC																																																																														
YAP1	10413	MSKCC	GRCh37	11	102076646	102076646	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	38	371	0	ENST00000282441.5:c.825G>C	p.Gln275His	p.Q275H	ENST00000282441	NM_001130145.2	275	caG/caC																																																																														
BLM	641	MSKCC	GRCh37	15	91346925	91346925	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	13	366	0	ENST00000355112.3:c.3535del	p.Thr1179LeufsTer3	p.T1179Lfs*3	ENST00000355112	NM_000057.2	1178	cAa/ca																																																																														
CD79B	974	MSKCC	GRCh37	17	62007560	62007560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	11	781	1	ENST00000392795.3:c.307G>A	p.Glu103Lys	p.E103K	ENST00000392795	NM_001039933.1	103	Gaa/Aaa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432284	432284	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	117	557	0	ENST00000399788.2:c.2239A>G	p.Thr747Ala	p.T747A	ENST00000399788	NM_001042603.1	747	Aca/Gca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0044321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	37	587	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
CDH1	999	MSKCC	GRCh37	16	68771344	68771344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	25	307	0	ENST00000261769.5:c.26C>G	p.Ser9Trp	p.S9W	ENST00000261769	NM_004360.3	9	tCg/tGg																																																																														
NF1	4763	MSKCC	GRCh37	17	29687598	29687598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	50	572	0	ENST00000358273.4:c.8254G>C	p.Glu2752Gln	p.E2752Q	ENST00000358273	NM_001042492.2	2752	Gaa/Caa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2978423	2978423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	43	755	0	ENST00000396946.4:c.907G>A	p.Asp303Asn	p.D303N	ENST00000396946	NM_032415.4	303	Gac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922731	44922731	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	35	231	0	ENST00000377967.4:c.1592C>A	p.Ser531Ter	p.S531*	ENST00000377967	NM_021140.2	531	tCa/tAa																																																																														
CDH1	999	MSKCC	GRCh37	16	68855966	68855966	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35187787		P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	52	773	1	ENST00000261769.5:c.1774G>A	p.Ala592Thr	p.A592T	ENST00000261769	NM_004360.3	592	Gcc/Acc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	66	941	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	46	822	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	65	820	7	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371644	89371644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs949172972		P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	61	888	0	ENST00000301030.4:c.196G>A	p.Ala66Thr	p.A66T	ENST00000301030	NM_001256183.1	66	Gcc/Acc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	36	180	1	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	54	773	3	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	91	936	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	67	1085	5	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs786201995		P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	100	664	0	ENST00000371953.3:c.70G>T	p.Asp24Tyr	p.D24Y	ENST00000371953	NM_000314.4	24	Gac/Tac																																																																														
NF1	4763	MSKCC	GRCh37	17	29585361	29585361	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	53	510	0	ENST00000358273.4:c.4174-1G>T		p.X1392_splice	ENST00000358273	NM_001042492.2	1392																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40748576	40748576	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	38	641	0	ENST00000373198.4:c.2940A>C	p.Gln980His	p.Q980H	ENST00000373198	NM_133170.3	980	caA/caC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916855	178916855	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	59	229	0	ENST00000263967.3:c.242A>C	p.Glu81Ala	p.E81A	ENST00000263967	NM_006218.2	81	gAa/gCa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202912	16202912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	55	712	0	ENST00000375759.3:c.620A>G	p.Glu207Gly	p.E207G	ENST00000375759	NM_015001.2	207	gAg/gGg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654712	67654712	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	53	552	0	ENST00000264010.4:c.1199C>A	p.Thr400Asn	p.T400N	ENST00000264010	NM_006565.3	400	aCc/aAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145642	11145642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	61	985	2	ENST00000344626.4:c.4004C>T	p.Pro1335Leu	p.P1335L	ENST00000344626	NM_003072.3	1335	cCg/cTg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158626878	158626878	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	37	385	0	ENST00000263640.3:c.790+2T>C		p.X264_splice	ENST00000263640	NM_001105.4	264																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735602	204735602	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	36	596	0	ENST00000302823.3:c.403T>C	p.Tyr135His	p.Y135H	ENST00000302823	NM_005214.4	135	Tac/Cac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180969	32180969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	52	912	2	ENST00000375023.3:c.2381C>A	p.Ala794Asp	p.A794D	ENST00000375023	NM_004557.3	794	gCc/gAc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852242	128852242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	59	1008	0	ENST00000249373.3:c.2314C>A	p.Arg772Ser	p.R772S	ENST00000249373	NM_005631.4	772	Cgc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1060501197		P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	1098	602	2	ENST00000269305.4:c.716del	p.Asn239ThrfsTer8	p.N239Tfs*8	ENST00000269305	NM_001126112.2	239	aAc/ac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	352	552	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	49039340	49039340	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	314	597	0	ENST00000267163.4:c.2326-1del		p.X776_splice	ENST00000267163	NM_000321.2	776																																																																															
TET1	80312	MSKCC	GRCh37	10	70405959	70405959	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	351	602	0	ENST00000373644.4:c.3473G>C	p.Arg1158Pro	p.R1158P	ENST00000373644	NM_030625.2	1158	cGg/cCg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552754	18552754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	217	470	0	ENST00000266497.5:c.2165T>C	p.Leu722Ser	p.L722S	ENST00000266497		722	tTa/tCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431583	49431584	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	347	721	0	ENST00000301067.7:c.9555dup	p.Gly3186TrpfsTer29	p.G3186Wfs*29	ENST00000301067	NM_003482.3	3185	-/T																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915007	32915007	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	184	521	0	ENST00000380152.3:c.6515C>G	p.Ser2172Ter	p.S2172*	ENST00000380152		2172	tCa/tGa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136242	2136242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	373	756	0	ENST00000219476.3:c.4711T>C	p.Tyr1571His	p.Y1571H	ENST00000219476	NM_000548.3	1571	Tac/Cac																																																																														
AXL	558	MSKCC	GRCh37	19	41743994	41743994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	422	854	0	ENST00000301178.4:c.929C>A	p.Ala310Glu	p.A310E	ENST00000301178	NM_021913.4	310	gCa/gAa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017378	31017774	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCATAGGTTCTAGTGCTGGGCTCTGCTGTGTGCCTTCCTCTTTGTCTCCCAGGGCAGTCGTGAGGATCCAACGGAGGATTTGATTATGCCAGTGCTTTGTAAAAGGTGTAGTGCTATACAAATAAAGATGGCAGTTTGGCACCTGTAAGGTGATATTTTAAAGCCAGACCATGAAGTGGTGGTTTCTCTCAGCCTAAGGCTGGGAGATGGAAGCATCCCAGTATTGCTGGCAGCATCTCAGGGAGAGCTGGGAGAAATGAGCTTGTCTGAGAGCCATGGGCGCGGCTTGGTGATACTTTTGACCAGTGGAATGCTGTGCCTTCAGGGTTCTCGGGCTGCCACGCCGATGGCGAGAGCGGCAGCCCGTCCAGCAGCAGCAGCGGCTCTCTGGCCCTG	GCCATAGGTTCTAGTGCTGGGCTCTGCTGTGTGCCTTCCTCTTTGTCTCCCAGGGCAGTCGTGAGGATCCAACGGAGGATTTGATTATGCCAGTGCTTTGTAAAAGGTGTAGTGCTATACAAATAAAGATGGCAGTTTGGCACCTGTAAGGTGATATTTTAAAGCCAGACCATGAAGTGGTGGTTTCTCTCAGCCTAAGGCTGGGAGATGGAAGCATCCCAGTATTGCTGGCAGCATCTCAGGGAGAGCTGGGAGAAATGAGCTTGTCTGAGAGCCATGGGCGCGGCTTGGTGATACTTTTGACCAGTGGAATGCTGTGCCTTCAGGGTTCTCGGGCTGCCACGCCGATGGCGAGAGCGGCAGCCCGTCCAGCAGCAGCAGCGGCTCTCTGGCCCTG	-			P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	22	60	0	ENST00000375687.4:c.565+145_637del		p.X189_splice	ENST00000375687	NM_015338.5	189																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713425	40713438	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CCCGGTAGGCAGGC	CCCGGTAGGCAGGC	-			P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	403	829	0	ENST00000373198.4:c.4077_4090del	p.Trp1359Ter	p.W1359*	ENST00000373198	NM_133170.3	1359	tgGCCTGCCTACCGGGac/tgac																																																																														
KDR	3791	MSKCC	GRCh37	4	55953877	55953877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	276	425	0	ENST00000263923.4:c.3559G>A	p.Glu1187Lys	p.E1187K	ENST00000263923	NM_002253.2	1187	Gaa/Aaa																																																																														
CCND3	896	MSKCC	GRCh37	6	41904279	41904301	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGCTACCCAGCACTCACCACTT	CAGCTACCCAGCACTCACCACTT	-			P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	138	377	0	ENST00000372991.4:c.707_711+18del		p.X236_splice	ENST00000372991	NM_001760.3	236																																																																															
RAD21	5885	MSKCC	GRCh37	8	117866592	117866592	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	214	516	0	ENST00000297338.2:c.1053G>C	p.Leu351Phe	p.L351F	ENST00000297338	NM_006265.2	351	ttG/ttC																																																																														
KIT	3815	MSKCC	GRCh37	4	55593638	55593661	+	inframe_deletion	In_Frame_Del	DEL	TGTTTACATAGACCCAACACAACT	TGTTTACATAGACCCAACACAACT	-			P-0044370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	167	232	0	ENST00000288135.5:c.1705_1728del	p.Val569_Leu576del	p.V569_L576del	ENST00000288135	NM_000222.2	568	taTGTTTACATAGACCCAACACAACTt/tat																																																																														
GNA11	2767	MSKCC	GRCh37	19	3114941	3114941	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0044370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	50	500	2	ENST00000078429.4:c.477-1G>T		p.X159_splice	ENST00000078429	NM_002067.2	159																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	42	295	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786204041		P-0044388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	90	532	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																														
PGR	5241	MSKCC	GRCh37	11	100962566	100962566	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749564230		P-0044388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	32	325	1	ENST00000325455.5:c.1831G>A	p.Val611Ile	p.V611I	ENST00000325455	NM_001202474.3	611	Gtt/Att																																																																														
RECQL	5965	MSKCC	GRCh37	12	21636367	21636367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs376839517		P-0044388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	50	366	2	ENST00000421138.2:c.643C>T	p.Arg215Ter	p.R215*	ENST00000421138		215	Cga/Tga																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368291	45368291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	24	299	0	ENST00000262160.6:c.1311G>T	p.Trp437Cys	p.W437C	ENST00000262160	NM_005901.5	437	tgG/tgT																																																																														
ALK	238	MSKCC	GRCh37	2	29917804	29917804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	43	619	0	ENST00000389048.3:c.864G>A	p.Trp288Ter	p.W288*	ENST00000389048	NM_004304.4	288	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0044392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	1091	626	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204864		P-0044392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	160	314	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	267	311	0	ENST00000268712.3:c.1573dup	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	76	383	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																														
HGF	3082	MSKCC	GRCh37	7	81336663	81336663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	160	244	0	ENST00000222390.5:c.1559G>A	p.Gly520Glu	p.G520E	ENST00000222390	NM_000601.4	520	gGa/gAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440208	49440208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	224	440	0	ENST00000301067.7:c.4419-1G>A		p.X1473_splice	ENST00000301067	NM_003482.3	1473																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428594	49428594	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0044392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	254	530	0	ENST00000301067.7:c.10355+1G>T		p.X3452_splice	ENST00000301067	NM_003482.3	3452																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644813	67644813	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	230	484	0	ENST00000264010.4:c.78G>C	p.Gln26His	p.Q26H	ENST00000264010	NM_006565.3	26	caG/caC																																																																														
FANCA	2175	MSKCC	GRCh37	16	89818553	89818553	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs777061373		P-0044392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	48	359	0	ENST00000389301.3:c.3059G>C	p.Arg1020Thr	p.R1020T	ENST00000389301	NM_000135.2	1020	aGa/aCa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56111807	56111807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	14	20	0	ENST00000399503.3:c.407C>G	p.Ser136Trp	p.S136W	ENST00000399503	NM_005921.1	136	tCg/tGg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033260	69033260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	218	315	0	ENST00000288368.4:c.3700C>G	p.Gln1234Glu	p.Q1234E	ENST00000288368	NM_024870.2	1234	Cag/Gag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	125	286	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	106	331	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	401	653	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	258	581	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	174	724	0	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730802	40730802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747513450		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	350	501	3	ENST00000373198.4:c.3733G>A	p.Gly1245Arg	p.G1245R	ENST00000373198	NM_133170.3	1245	Gga/Aga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	111	662	3	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	137	210	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	52	150	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	123	326	1	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
RB1	5925	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	62	236	0	ENST00000267163.4:c.1959del	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																														
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	214	734	2	ENST00000575354.2:c.4586del	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910372	29910372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	136	564	0	ENST00000376809.5:c.46del	p.Ala16ProfsTer4	p.A16Pfs*4	ENST00000376809	NM_002116.7	14	tcG/tc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	120	488	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36938271	36938271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	123	650	1	ENST00000361632.4:c.690del	p.Met231CysfsTer32	p.M231Cfs*32	ENST00000361632		230	ccC/cc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467855	99467856	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	74	358	0	ENST00000268035.6:c.2732_2733dup	p.Gly912LeufsTer26	p.G912Lfs*26	ENST00000268035	NM_000875.3	908	-/TC																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-	rs769920981		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	70	562	0	ENST00000291552.4:c.648_653del	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774211426		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	80	438	0	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	78	379	0	ENST00000334205.4:c.2287del	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830450	72830450	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	48	364	0	ENST00000268489.5:c.6131del	p.Pro2044LeufsTer57	p.P2044Lfs*57	ENST00000268489	NM_006885.3	2044	cCt/ct																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767319284		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	104	545	2	ENST00000337652.1:c.1561dup	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	150	440	4	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	56	773	6	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	173	586	11	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100397	157100399	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-	rs766249098		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	12	71	0	ENST00000346085.5:c.1348_1350del	p.Pro450del	p.P450del	ENST00000346085	NM_020732.3	445	gCGCcg/gcg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131411	202131411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs777784105		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	153	398	1	ENST00000358485.4:c.379C>T	p.Arg127Ter	p.R127*	ENST00000358485	NM_001080125.1	127	Cga/Tga																																																																														
RAD50	10111	MSKCC	GRCh37	5	131973889	131973889	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs761837416		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	54	240	0	ENST00000265335.6:c.3592C>T	p.Arg1198Ter	p.R1198*	ENST00000265335		1198	Cga/Tga																																																																														
PAK7	0	MSKCC	GRCh37	20	9561211	9561211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	103	407	0	ENST00000353224.5:c.571G>A	p.Asp191Asn	p.D191N	ENST00000353224	NM_177990.2	191	Gat/Aat																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99189323	99189323	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1173310435		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	34	453	0	ENST00000074304.5:c.2579G>A	p.Arg860Gln	p.R860Q	ENST00000074304	NM_001134224.1	860	cGg/cAg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	173	677	3	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658800	3658800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746769352		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	35	533	0	ENST00000294008.3:c.166G>A	p.Ala56Thr	p.A56T	ENST00000294008	NM_032444.2	56	Gct/Act																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321665	62321665	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	C	C	T	rs750251447		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	138	517	0	ENST00000482936.1:c.2284C>T	p.Arg762Trp	p.R762W	ENST00000482936		762	Cgg/Tgg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742497	17742497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	151	599	0	ENST00000250003.3:c.679G>A	p.Glu227Lys	p.E227K	ENST00000250003	NM_002478.4	227	Gaa/Aaa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591134	67591134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767013611		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	24	236	0	ENST00000274335.5:c.1727C>T	p.Thr576Met	p.T576M	ENST00000274335		576	aCg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836322	151836322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064796342		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	129	428	0	ENST00000262189.6:c.14483G>A	p.Arg4828His	p.R4828H	ENST00000262189	NM_170606.2	4828	cGc/cAc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430227	181430227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	88	296	0	ENST00000325404.1:c.79G>A	p.Ala27Thr	p.A27T	ENST00000325404	NM_003106.3	27	Gcg/Acg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121118	11121118	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	286	558	1	ENST00000344626.4:c.2185C>T	p.Gln729Ter	p.Q729*	ENST00000344626	NM_003072.3	729	Cag/Tag																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422039	81422040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	226	370	0	ENST00000298171.2:c.17dup	p.Leu6PhefsTer56	p.L6Ffs*56	ENST00000298171	NM_000369.2	5	-/T																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262714	16262714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1022457753		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	67	349	0	ENST00000375759.3:c.9979G>A	p.Ala3327Thr	p.A3327T	ENST00000375759	NM_015001.2	3327	Gcc/Acc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598207	28598207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	212	654	0	ENST00000253063.3:c.179G>T	p.Ser60Ile	p.S60I	ENST00000253063	NM_031459.4	60	aGc/aTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115733	8115733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	87	334	0	ENST00000346208.3:c.1079G>A	p.Gly360Asp	p.G360D	ENST00000346208		360	gGc/gAc																																																																														
TET1	80312	MSKCC	GRCh37	10	70406039	70406039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	140	549	0	ENST00000373644.4:c.3553A>G	p.Thr1185Ala	p.T1185A	ENST00000373644	NM_030625.2	1185	Aca/Gca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573903	18573903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	25	300	0	ENST00000266497.5:c.2221G>T	p.Ala741Ser	p.A741S	ENST00000266497		741	Gca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446840	49446840	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1370093761		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	39	456	1	ENST00000301067.7:c.970C>T	p.Arg324Trp	p.R324W	ENST00000301067	NM_003482.3	324	Cgg/Tgg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012365	29012365	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	125	353	0	ENST00000282397.4:c.506T>A	p.Leu169Ter	p.L169*	ENST00000282397	NM_002019.4	169	tTa/tAa																																																																														
B2M	567	MSKCC	GRCh37	15	45007693	45007693	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	55	288	0	ENST00000558401.1:c.140T>G	p.Val47Gly	p.V47G	ENST00000558401	NM_004048.2	47	gTg/gGg																																																																														
CBFB	865	MSKCC	GRCh37	16	67063364	67063364	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	96	311	0	ENST00000412916.2:c.54T>A	p.Phe18Leu	p.F18L	ENST00000412916		18	ttT/ttA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992303	72992303	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1405980712		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	110	685	0	ENST00000268489.5:c.1742T>C	p.Val581Ala	p.V581A	ENST00000268489	NM_006885.3	581	gTg/gCg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972415	81972415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	129	352	0	ENST00000359376.3:c.3208G>A	p.Ala1070Thr	p.A1070T	ENST00000359376	NM_002661.3	1070	Gct/Act																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763496	59763496	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060501733		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	119	311	0	ENST00000259008.2:c.2606A>G	p.Gln869Arg	p.Q869R	ENST00000259008	NM_032043.2	869	cAg/cGg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600362	10600362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1281598803		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	262	607	0	ENST00000171111.5:c.1493G>A	p.Arg498Gln	p.R498Q	ENST00000171111	NM_203500.1	498	cGa/cAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42797135	42797135	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	237	711	0	ENST00000575354.2:c.3501del	p.Lys1168ArgfsTer13	p.K1168Rfs*13	ENST00000575354	NM_015125.3	1166	gCc/gc																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62292821	62292822	+	inframe_insertion,NMD_transcript_variant	In_Frame_Ins	INS	-	-	GCT	rs1319920036		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	124	323	0	ENST00000482936.1:c.287_289dup	p.Ala96dup	p.A96dup	ENST00000482936		96	-/GCT																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940817	49940817	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	155	637	0	ENST00000296474.3:c.226A>G	p.Asn76Asp	p.N76D	ENST00000296474	NM_002447.2	76	Aat/Gat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361163	66361163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	48	270	0	ENST00000273854.3:c.1009G>A	p.Val337Ile	p.V337I	ENST00000273854	NM_004439.5	337	Gtc/Atc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751242	57751242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	88	270	0	ENST00000274289.3:c.1626-1G>C		p.X542_splice	ENST00000274289	NM_006622.3	542																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67575490	67575490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148059720		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	108	282	0	ENST00000274335.5:c.563G>A	p.Arg188His	p.R188H	ENST00000274335		188	cGc/cAc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372056	55372056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	32	347	0	ENST00000297316.4:c.746G>A	p.Gly249Asp	p.G249D	ENST00000297316	NM_022454.3	249	gGc/gAc																																																																														
TEK	7010	MSKCC	GRCh37	9	27172631	27172631	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	130	410	0	ENST00000380036.4:c.646T>C	p.Trp216Arg	p.W216R	ENST00000380036	NM_000459.3	216	Tgg/Cgg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923357	36923357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	159	535	0	ENST00000358127.4:c.905T>C	p.Val302Ala	p.V302A	ENST00000358127	NM_001280556.1	302	gTg/gCg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759881	133759881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1310633113		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	98	696	0	ENST00000318560.5:c.2204C>T	p.Thr735Met	p.T735M	ENST00000318560	NM_005157.4	735	aCg/aTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759889	133759889	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138167706		P-0044406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	100	689	0	ENST00000318560.5:c.2212C>T	p.Arg738Trp	p.R738W	ENST00000318560	NM_005157.4	738	Cgg/Tgg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724632	162724632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767283136		P-0044409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	60	469	1	ENST00000367921.3:c.404G>A	p.Arg135His	p.R135H	ENST00000367921	NM_006182.2	135	cGt/cAt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28959073	28959073	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761475937		P-0044409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	58	386	0	ENST00000282397.4:c.2065G>A	p.Glu689Lys	p.E689K	ENST00000282397	NM_002019.4	689	Gag/Aag																																																																														
BLM	641	MSKCC	GRCh37	15	91306262	91306262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	22	351	0	ENST00000355112.3:c.1949C>T	p.Pro650Leu	p.P650L	ENST00000355112	NM_000057.2	650	cCt/cTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779755	3779755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	71	707	0	ENST00000262367.5:c.5293del	p.Gln1765ArgfsTer6	p.Q1765Rfs*6	ENST00000262367	NM_004380.2	1765	Cag/ag																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66520176	66520176	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	44	406	1	ENST00000358598.2:c.463del	p.Ser155ArgfsTer10	p.S155Rfs*10	ENST00000358598	NM_212471.2	154	Ttt/tt																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62305359	62305359	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs200429535		P-0044409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	82	794	0	ENST00000482936.1:c.832G>A	p.Val278Ile	p.V278I	ENST00000482936		278	Gtc/Atc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0044409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	120	342	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539216	187539216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	41	363	0	ENST00000441802.2:c.8524G>T	p.Gly2842Cys	p.G2842C	ENST00000441802	NM_005245.3	2842	Ggc/Tgc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659309	86659309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	17	156	0	ENST00000274376.6:c.1598G>T	p.Ser533Ile	p.S533I	ENST00000274376	NM_002890.2	533	aGt/aTt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519397	176519397	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	86	725	0	ENST00000292408.4:c.803A>G	p.Glu268Gly	p.E268G	ENST00000292408	NM_213647.1	268	gAg/gGg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0044409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	91	537	2	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653794	89653797	+	frameshift_variant	Frame_Shift_Del	DEL	ACAT	ACAT	-			P-0044409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	150	301	0	ENST00000371953.3:c.92_95del	p.Asn31IlefsTer22	p.N31Ifs*22	ENST00000371953	NM_000314.4	31	aACATt/at																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52649459	52649459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	81	418	0	ENST00000394830.3:c.1832C>A	p.Ala611Glu	p.A611E	ENST00000394830	NM_018313.4	611	gCa/gAa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784047	9784047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	138	684	0	ENST00000377346.4:c.2615T>C	p.Ile872Thr	p.I872T	ENST00000377346	NM_005026.3	872	aTt/aCt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778111	135778111	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397514783		P-0044442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	125	499	0	ENST00000298552.3:c.2272C>T	p.Gln758Ter	p.Q758*	ENST00000298552	NM_001162426.1	758	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	225	553	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163297	32163297	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1239036035		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	417	990	0	ENST00000375023.3:c.5929G>A	p.Glu1977Lys	p.E1977K	ENST00000375023	NM_004557.3	1977	Gag/Aag																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023037	33023037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	75	478	0	ENST00000300177.4:c.146C>T	p.Ser49Leu	p.S49L	ENST00000300177	NM_001191322.1	49	tCg/tTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70339981	70339981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	180	221	0	ENST00000374080.3:c.514G>A	p.Glu172Lys	p.E172K	ENST00000374080		172	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	185	265	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843447	3843447	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587783461		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	225	504	0	ENST00000262367.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000262367	NM_004380.2	386	Cga/Tga																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99193530	99193530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	297	677	0	ENST00000074304.5:c.2725G>A	p.Glu909Lys	p.E909K	ENST00000074304	NM_001134224.1	909	Gag/Aag																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793134	33793134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1452063514		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	208	394	0	ENST00000498907.2:c.187G>A	p.Asp63Asn	p.D63N	ENST00000498907	NM_004364.3	63	Gac/Aac																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870966	12870966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	174	432	0	ENST00000228872.4:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000228872	NM_004064.3	65	Cag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618547	37618547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	340	597	0	ENST00000447079.4:c.223G>A	p.Asp75Asn	p.D75N	ENST00000447079	NM_015083.1	75	Gat/Aat																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619292	37619292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	279	515	0	ENST00000447079.4:c.968C>T	p.Ser323Leu	p.S323L	ENST00000447079	NM_015083.1	323	tCg/tTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855787	45855787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	205	699	0	ENST00000391945.4:c.2023G>T	p.Gly675Cys	p.G675C	ENST00000391945	NM_000400.3	675	Ggc/Tgc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952304	17952304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	163	872	0	ENST00000458235.1:c.1036G>A	p.Asp346Asn	p.D346N	ENST00000458235	NM_000215.3	346	Gac/Aac																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374909	149374909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	326	617	0	ENST00000360632.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000360632	NM_015472.4	62	tCg/tTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	223	492	0				ENST00000310581	NM_198253.2																																																																																
PDCD1	5133	MSKCC	GRCh37	2	242794999	242794999	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1424422486		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	166	923	2	ENST00000334409.5:c.210G>A	p.Met70Ile	p.M70I	ENST00000334409	NM_005018.2	70	atG/atA																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660138	227660138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1448309277		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	128	655	2	ENST00000305123.5:c.3317C>T	p.Ser1106Leu	p.S1106L	ENST00000305123	NM_005544.2	1106	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151851228	151851228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	30	275	0	ENST00000262189.6:c.12143C>T	p.Ser4048Leu	p.S4048L	ENST00000262189	NM_170606.2	4048	tCa/tTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023943	27023943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	34	105	0	ENST00000324856.7:c.1049C>T	p.Ser350Leu	p.S350L	ENST00000324856	NM_006015.4	350	tCg/tTg																																																																														
JUN	3725	MSKCC	GRCh37	1	59247882	59247882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	239	872	0	ENST00000371222.2:c.861G>C	p.Leu287Phe	p.L287F	ENST00000371222	NM_002228.3	287	ttG/ttC																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78425916	78425916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	207	406	0	ENST00000370768.2:c.1529G>A	p.Trp510Ter	p.W510*	ENST00000370768	NM_003902.3	510	tGg/tAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466576	120466576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	95	530	0	ENST00000256646.2:c.4543G>A	p.Asp1515Asn	p.D1515N	ENST00000256646	NM_024408.3	1515	Gac/Aac																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551376	150551376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1246	349	979	1	ENST00000369026.2:c.631G>A	p.Glu211Lys	p.E211K	ENST00000369026	NM_021960.4	211	Gag/Aag																																																																														
CDC73	79577	MSKCC	GRCh37	1	193119447	193119447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	70	317	0	ENST00000367435.3:c.842G>C	p.Arg281Pro	p.R281P	ENST00000367435	NM_024529.4	281	cGc/cCc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575515	64575525	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCTGGCAG	GGGCCTGGCAG	-			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	192	674	0	ENST00000337652.1:c.507_517del	p.Cys170GlyfsTer11	p.C170Gfs*11	ENST00000337652	NM_130803.2	169	gcCTGCCAGGCCCtg/gctg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102206918	102206918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	70	321	0	ENST00000263464.3:c.1546G>A	p.Glu516Lys	p.E516K	ENST00000263464	NM_001165.4	516	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108214016	108214016	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs876660461		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	30	377	0	ENST00000278616.4:c.8336T>G	p.Phe2779Cys	p.F2779C	ENST00000278616	NM_000051.3	2779	tTt/tGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352519	118352519	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	164	549	0	ENST00000534358.1:c.3724C>T	p.Gln1242Ter	p.Q1242*	ENST00000534358	NM_005933.3	1242	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427885	49427885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	252	701	0	ENST00000301067.7:c.10705G>A	p.Glu3569Lys	p.E3569K	ENST00000301067	NM_003482.3	3569	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444499	49444499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	151	740	0	ENST00000301067.7:c.2872G>C	p.Glu958Gln	p.E958Q	ENST00000301067	NM_003482.3	958	Gag/Cag																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588597	28588597	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	41	384	0	ENST00000241453.7:c.2851G>C	p.Glu951Gln	p.E951Q	ENST00000241453	NM_004119.2	951	Gaa/Caa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527705	103527705	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746776649		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	82	312	0	ENST00000355739.4:c.3013G>A	p.Glu1005Lys	p.E1005K	ENST00000355739	NM_000123.3	1005	Gaa/Aaa																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023114	33023114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	196	550	0	ENST00000300177.4:c.223G>A	p.Glu75Lys	p.E75K	ENST00000300177	NM_001191322.1	75	Gag/Aag																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38591728	38591728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	78	451	0	ENST00000299084.4:c.187G>A	p.Glu63Lys	p.E63K	ENST00000299084	NM_152594.2	63	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	42041908	42041908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	91	543	0	ENST00000219905.7:c.6103G>A	p.Glu2035Lys	p.E2035K	ENST00000219905	NM_001164273.1	2035	Gaa/Aaa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762144	43762144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	172	743	2	ENST00000382044.4:c.1301C>T	p.Ser434Leu	p.S434L	ENST00000382044	NM_001141980.1	434	tCa/tTa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138583	2138583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778484981		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	44	730	0	ENST00000219476.3:c.5396C>T	p.Ser1799Leu	p.S1799L	ENST00000219476	NM_000548.3	1799	tCg/tTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817781	3817781	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886041006		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	291	597	0	ENST00000262367.5:c.3190G>A	p.Glu1064Lys	p.E1064K	ENST00000262367	NM_004380.2	1064	Gag/Aag																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14021937	14021937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	156	466	0	ENST00000311895.7:c.637G>A	p.Glu213Lys	p.E213K	ENST00000311895	NM_005236.2	213	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821848	72821848	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1287091663		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	161	536	0	ENST00000268489.5:c.10327G>A	p.Glu3443Lys	p.E3443K	ENST00000268489	NM_006885.3	3443	Gaa/Aaa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882287	89882287	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	47	453	0	ENST00000389301.3:c.187G>A	p.Glu63Lys	p.E63K	ENST00000389301	NM_000135.2	63	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29684350	29684350	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	158	468	0	ENST00000358273.4:c.7933G>T	p.Glu2645Ter	p.E2645*	ENST00000358273	NM_001042492.2	2645	Gag/Tag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942499	17942499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	163	800	0	ENST00000458235.1:c.2789C>T	p.Ser930Phe	p.S930F	ENST00000458235	NM_000215.3	930	tCc/tTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18956873	18956873	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758924331		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	125	681	0	ENST00000262803.5:c.316G>A	p.Glu106Lys	p.E106K	ENST00000262803	NM_002911.3	106	Gag/Aag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18958573	18958573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	299	600	1	ENST00000262803.5:c.392C>T	p.Pro131Leu	p.P131L	ENST00000262803	NM_002911.3	131	cCt/cTt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211411	36211411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	1062	935	0	ENST00000222270.7:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000222270	NM_014727.1	388	Gag/Aag																																																																														
ERF	2077	MSKCC	GRCh37	19	42753786	42753786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765102149		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	377	1004	0	ENST00000222329.4:c.478C>T	p.Arg160Cys	p.R160C	ENST00000222329	NM_006494.2	160	Cgc/Tgc																																																																														
CIC	23152	MSKCC	GRCh37	19	42796483	42796483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751173226		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	316	852	0	ENST00000575354.2:c.3040G>A	p.Ala1014Thr	p.A1014T	ENST00000575354	NM_015125.3	1014	Gcg/Acg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967285	25967285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	53	474	0	ENST00000435504.4:c.1921C>T	p.Arg641Cys	p.R641C	ENST00000435504		641	Cgt/Tgt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967335	25967335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	204	423	0	ENST00000435504.4:c.1871C>T	p.Ser624Phe	p.S624F	ENST00000435504		624	tCc/tTc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047360	128047360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	171	473	0	ENST00000285398.2:c.562C>T	p.Leu188Phe	p.L188F	ENST00000285398	NM_000122.1	188	Ctt/Ttt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989531	212989531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1443958987		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	205	348	0	ENST00000342788.4:c.180G>A	p.Met60Ile	p.M60I	ENST00000342788	NM_005235.2	60	atG/atA																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659740	227659740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	183	461	0	ENST00000305123.5:c.3715G>A	p.Glu1239Lys	p.E1239K	ENST00000305123	NM_005544.2	1239	Gag/Aag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661616	227661616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	126	692	0	ENST00000305123.5:c.1839G>A	p.Met613Ile	p.M613I	ENST00000305123	NM_005544.2	613	atG/atA																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309757	30309757	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs996600059		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	245	636	0	ENST00000307677.4:c.265G>A	p.Ala89Thr	p.A89T	ENST00000307677	NM_138578.1	89	Gcg/Acg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31385023	31385023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	222	597	1	ENST00000328111.2:c.1408G>A	p.Asp470Asn	p.D470N	ENST00000328111	NM_006892.3	470	Gat/Aat																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280649	41280649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	281	635	0	ENST00000349496.5:c.2162C>T	p.Ser721Phe	p.S721F	ENST00000349496	NM_001904.3	721	tCt/tTt																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502882	186502882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	177	403	0	ENST00000323963.5:c.340G>C	p.Ala114Pro	p.A114P	ENST00000323963		114	Gct/Cct																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806615	1806615	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761325047		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	141	877	0	ENST00000260795.2:c.1331C>T	p.Ser444Phe	p.S444F	ENST00000260795		444	tCc/tTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146626	55146626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	230	503	1	ENST00000257290.5:c.2300C>T	p.Ser767Leu	p.S767L	ENST00000257290	NM_006206.4	767	tCa/tTa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143029321	143029321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	41	227	0	ENST00000262992.4:c.2299G>C	p.Glu767Gln	p.E767Q	ENST00000262992	NM_001101669.1	767	Gaa/Caa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187519281	187519281	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	111	414	0	ENST00000441802.2:c.12104-2A>C		p.X4035_splice	ENST00000441802	NM_005245.3	4035																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542269	187542269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	47	327	0	ENST00000441802.2:c.5471C>T	p.Ser1824Phe	p.S1824F	ENST00000441802	NM_005245.3	1824	tCt/tTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629169	187629169	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	90	548	0	ENST00000441802.2:c.1813C>T	p.Gln605Ter	p.Q605*	ENST00000441802	NM_005245.3	605	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630295	187630295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	110	569	0	ENST00000441802.2:c.687G>A	p.Met229Ile	p.M229I	ENST00000441802	NM_005245.3	229	atG/atA																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915627	131915627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	135	304	2	ENST00000265335.6:c.625G>A	p.Glu209Lys	p.E209K	ENST00000265335		209	Gaa/Aaa																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158737	26158737	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	241	532	0	ENST00000289316.2:c.340G>C	p.Glu114Gln	p.E114Q	ENST00000289316	NM_138720.2	114	Gag/Cag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181961	32181961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	299	745	0	ENST00000375023.3:c.2093C>T	p.Ala698Val	p.A698V	ENST00000375023	NM_004557.3	698	gCa/gTa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821421	32821421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	248	843	0	ENST00000354258.4:c.173G>A	p.Arg58Gln	p.R58Q	ENST00000354258	NM_000593.5	58	cGa/cAa																																																																														
PARK2	0	MSKCC	GRCh37	6	162864457	162864457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	175	488	0	ENST00000366898.1:c.56C>T	p.Ser19Phe	p.S19F	ENST00000366898	NM_004562.2	19	tCt/tTt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6037009	6037009	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142434011		P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	218	519	0	ENST00000265849.7:c.751G>A	p.Val251Met	p.V251M	ENST00000265849	NM_000535.5	251	Gtg/Atg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859429	151859429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	80	502	1	ENST00000262189.6:c.11233G>A	p.Glu3745Lys	p.E3745K	ENST00000262189	NM_170606.2	3745	Gaa/Aaa																																																																														
LYN	4067	MSKCC	GRCh37	8	56911053	56911053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	235	469	0	ENST00000519728.1:c.1199G>A	p.Arg400Lys	p.R400K	ENST00000519728	NM_002350.3	400	aGg/aAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021812	69021812	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	311	573	0	ENST00000288368.4:c.3100C>T	p.Gln1034Ter	p.Q1034*	ENST00000288368	NM_024870.2	1034	Cag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76949351	76949351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	130	236	0	ENST00000373344.5:c.446G>A	p.Arg149Lys	p.R149K	ENST00000373344	NM_000489.3	149	aGa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	150	370	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	166	587	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	156	359	0	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032138	26032138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	40	467	0	ENST00000244661.2:c.151G>A	p.Glu51Lys	p.E51K	ENST00000244661	NM_003537.3	51	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	145	811	0	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290207	15290207	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144559574		P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	209	939	2	ENST00000263388.2:c.3428G>A	p.Arg1143His	p.R1143H	ENST00000263388	NM_000435.2	1143	cGc/cAc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849121	156849121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	65	1030	0	ENST00000524377.1:c.2013G>C	p.Met671Ile	p.M671I	ENST00000524377	NM_002529.3	671	atG/atC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057775	27057775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	170	848	0	ENST00000324856.7:c.1483C>T	p.His495Tyr	p.H495Y	ENST00000324856	NM_006015.4	495	Cat/Tat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059213	27059213	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	78	515	0	ENST00000324856.7:c.1850C>A	p.Ser617Ter	p.S617*	ENST00000324856	NM_006015.4	617	tCa/tAa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274262	5274262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	91	881	1	ENST00000357368.4:c.185C>T	p.Pro62Leu	p.P62L	ENST00000357368	NM_002850.3	62	cCa/cTa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198288680	198288680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	63	402	2	ENST00000335508.6:c.47G>T	p.Arg16Leu	p.R16L	ENST00000335508	NM_012433.2	16	cGa/cTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41546128	41546128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377517076		P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	145	493	0	ENST00000263253.7:c.2743C>T	p.Arg915Cys	p.R915C	ENST00000263253	NM_001429.3	915	Cgc/Tgc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86676334	86676334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	12	172	0	ENST00000274376.6:c.2612G>C	p.Arg871Thr	p.R871T	ENST00000274376	NM_002890.2	871	aGa/aCa																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225786	26225786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	28	450	0	ENST00000360408.1:c.404G>A	p.Arg135Lys	p.R135K	ENST00000360408	NM_003532.2	135	aGg/aAg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941877	44941878	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	107	172	0	ENST00000377967.4:c.3202dup	p.Ser1068PhefsTer3	p.S1068Ffs*3	ENST00000377967	NM_021140.2	1067	-/T																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264313	16264313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774985232		P-0044503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	205	515	0	ENST00000375759.3:c.10516C>T	p.Pro3506Ser	p.P3506S	ENST00000375759	NM_015001.2	3506	Ccc/Tcc																																																																														
PGR	5241	MSKCC	GRCh37	11	100999282	100999282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	350	943	0	ENST00000325455.5:c.520G>C	p.Asp174His	p.D174H	ENST00000325455	NM_001202474.3	174	Gac/Cac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284915	15284915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	442	994	0	ENST00000263388.2:c.4700C>A	p.Pro1567His	p.P1567H	ENST00000263388	NM_000435.2	1567	cCc/cAc																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907677	111907677	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	217	467	0	ENST00000393256.3:c.451G>T	p.Glu151Ter	p.E151*	ENST00000393256	NM_006538.4	151	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112179266	112179266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	135	305	1	ENST00000257430.4:c.7975G>A	p.Val2659Met	p.V2659M	ENST00000257430	NM_000038.5	2659	Gtg/Atg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117629985	117629985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	145	366	0	ENST00000368508.3:c.6541G>C	p.Glu2181Gln	p.E2181Q	ENST00000368508	NM_002944.2	2181	Gag/Cag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247079	53247079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	47	637	0	ENST00000375401.3:c.421C>T	p.Leu141Phe	p.L141F	ENST00000375401	NM_004187.3	141	Ctc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	17	362	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0044510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	24	451	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
MED12	9968	MSKCC	GRCh37	X	70344032	70344032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	88	715	5	ENST00000374080.3:c.1768C>T	p.Arg590Trp	p.R590W	ENST00000374080		590	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76907719	76907719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	43	468	0	ENST00000373344.5:c.4442G>A	p.Arg1481Gln	p.R1481Q	ENST00000373344	NM_000489.3	1481	cGg/cAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38955712	38955712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	41	335	0	ENST00000357387.3:c.2594G>A	p.Arg865His	p.R865H	ENST00000357387	NM_152756.3	865	cGt/cAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883158	37883158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	157	836	0	ENST00000269571.5:c.3061G>A	p.Glu1021Lys	p.E1021K	ENST00000269571		1021	Gag/Aag																																																																														
HGF	3082	MSKCC	GRCh37	7	81355326	81355326	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	25	230	0	ENST00000222390.5:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000222390	NM_000601.4	350	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231286	46231286	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	38	287	0	ENST00000334344.6:c.1126G>T	p.Glu376Ter	p.E376*	ENST00000334344	NM_152641.2	376	Gaa/Taa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246330	46246331	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0044510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	57	311	0	ENST00000334344.6:c.4424_4425del	p.Thr1475IlefsTer27	p.T1475Ifs*27	ENST00000334344	NM_152641.2	1475	aCC/a																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514617	103514617	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	37	382	0	ENST00000355739.4:c.1118A>C	p.Asn373Thr	p.N373T	ENST00000355739	NM_000123.3	373	aAc/aCc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521871	157521872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	76	392	0	ENST00000346085.5:c.4148dup	p.Ala1384SerfsTer75	p.A1384Sfs*75	ENST00000346085	NM_020732.3	1381	-/C																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061100	38061204	+	inframe_deletion	In_Frame_Del	DEL	GGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGC	GGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGC	-			P-0044548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	191	138	0	ENST00000250448.2:c.785_889del	p.Arg262_Asp296del	p.R262_D296del	ENST00000250448	NM_004496.3	262	cGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGACCcc/ccc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618605	37618605	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	117	491	0	ENST00000447079.4:c.283del	p.Glu95ArgfsTer29	p.E95Rfs*29	ENST00000447079	NM_015083.1	94	aGg/ag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37667806	37667808	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0044548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	93	404	0	ENST00000447079.4:c.2692_2694del	p.Thr898del	p.T898del	ENST00000447079	NM_015083.1	897	atTACt/att																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361229	66361229	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	45	313	0	ENST00000273854.3:c.943C>G	p.His315Asp	p.H315D	ENST00000273854	NM_004439.5	315	Cac/Gac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	33	313	0	ENST00000274335.5:c.1727_1729del	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589586	67589591	+	inframe_deletion	In_Frame_Del	DEL	ATGAAT	ATGAAT	-			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	13	269	0	ENST00000274335.5:c.1351_1356del	p.Glu451_Tyr452del	p.E451_Y452del	ENST00000274335		450	cATGAATat/cat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145645	11145645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	96	710	0	ENST00000344626.4:c.4007G>A	p.Arg1336His	p.R1336H	ENST00000344626	NM_003072.3	1336	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845573	72845574	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	111	681	1	ENST00000268489.5:c.3766dup	p.Leu1256ProfsTer25	p.L1256Pfs*25	ENST00000268489	NM_006885.3	1256	ctg/cCtg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148506462	148506462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	25	307	0	ENST00000320356.2:c.2050C>T	p.Arg684Cys	p.R684C	ENST00000320356	NM_004456.4	684	Cgc/Tgc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138431133	138431133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	16	324	1	ENST00000289153.2:c.1316C>T	p.Ala439Val	p.A439V	ENST00000289153	NM_006219.2	439	gCg/gTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	37	720	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097721	27097721	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	148	558	0	ENST00000324856.7:c.3310G>T	p.Glu1104Ter	p.E1104*	ENST00000324856	NM_006015.4	1104	Gaa/Taa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141569579	141569582	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	75	467	0	ENST00000220592.5:c.702_705del	p.Cys235LysfsTer15	p.C235Kfs*15	ENST00000220592	NM_012154.3	234	gtTTGT/gt																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874543	155874543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	69	562	0	ENST00000368323.3:c.216C>A	p.Asp72Glu	p.D72E	ENST00000368323	NM_006912.5	72	gaC/gaA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692915	89692915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	63	480	0	ENST00000371953.3:c.400del	p.Met134Ter	p.M134*	ENST00000371953	NM_000314.4	133	gtA/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717731	89717732	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	110	419	0	ENST00000371953.3:c.757_758insAA	p.Ile253LysfsTer4	p.I253Kfs*4	ENST00000371953	NM_000314.4	252	-/AA																																																																														
MGA	23269	MSKCC	GRCh37	15	42052645	42052645	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	57	529	1	ENST00000219905.7:c.7316T>A	p.Met2439Lys	p.M2439K	ENST00000219905	NM_001164273.1	2439	aTg/aAg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	364544	364544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs143974067		P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	59	661	0	ENST00000262320.3:c.1018G>A	p.Val340Met	p.V340M	ENST00000262320	NM_003502.3	340	Gtg/Atg																																																																														
STK11	6794	MSKCC	GRCh37	19	1222982	1222982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	147	542	0	ENST00000326873.7:c.921-2A>C		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
CIC	23152	MSKCC	GRCh37	19	42793101	42793101	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	52	813	1	ENST00000575354.2:c.996del	p.Ser333AlafsTer36	p.S333Afs*36	ENST00000575354	NM_015125.3	331	ccG/cc																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62320932	62320932	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	63	757	0	ENST00000482936.1:c.1956G>A	p.Met652Ile	p.M652I	ENST00000482936		652	atG/atA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971206	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	152	353	0	ENST00000304494.5:c.151_152del	p.Val51HisfsTer68	p.V51Hfs*68	ENST00000304494	NM_000077.4	51	GTc/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971206	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	152	353	0	ENST00000304494.5:c.151_152del	p.Val51HisfsTer68	p.V51Hfs*68	ENST00000304494	NM_000077.4	51	GTc/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971206	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	152	353	0	ENST00000304494.5:c.151_152del	p.Val51HisfsTer68	p.V51Hfs*68	ENST00000304494	NM_000077.4	51	GTc/c																																																																														
MED12	9968	MSKCC	GRCh37	X	70345961	70345961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	46	645	0	ENST00000374080.3:c.2498T>C	p.Phe833Ser	p.F833S	ENST00000374080		833	tTc/tCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	353	629	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0044574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	116	262	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434596		P-0044574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	182	325	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981792	70981792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	332	667	1	ENST00000276594.2:c.304T>C	p.Tyr102His	p.Y102H	ENST00000276594	NM_024504.3	102	Tac/Cac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228998	36228998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	365	593	1	ENST00000222270.7:c.7778G>A	p.Arg2593His	p.R2593H	ENST00000222270	NM_014727.1	2593	cGc/cAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920419	114920419	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs750925453		P-0044574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	234	409	0	ENST00000543371.1:c.1360G>T	p.Asp454Tyr	p.D454Y	ENST00000543371	NM_001198531.1	454	Gac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	395	665	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	124	425	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	209	772	4	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082307	16082307	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1191742873		P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	252	1017	1	ENST00000281043.3:c.121G>A	p.Asp41Asn	p.D41N	ENST00000281043	NM_005378.4	41	Gac/Aac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879279	151879279	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	141	559	0	ENST00000262189.6:c.5666C>G	p.Ser1889Ter	p.S1889*	ENST00000262189	NM_170606.2	1889	tCa/tGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151917721	151917721	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	23	235	0	ENST00000262189.6:c.3599C>G	p.Ser1200Ter	p.S1200*	ENST00000262189	NM_170606.2	1200	tCa/tGa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097818	8097818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	209	771	0	ENST00000346208.3:c.200C>G	p.Ser67Trp	p.S67W	ENST00000346208		67	tCg/tGg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098935	178098935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	113	444	1	ENST00000397062.3:c.110T>C	p.Phe37Ser	p.F37S	ENST00000397062	NM_006164.4	37	tTt/tCt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152044	11152044	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886054155		P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	213	741	0	ENST00000344626.4:c.4232G>A	p.Arg1411Gln	p.R1411Q	ENST00000344626	NM_003072.3	1411	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420613	49420614	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	210	786	0	ENST00000301067.7:c.15135dup	p.Pro5046AlafsTer26	p.P5046Afs*26	ENST00000301067	NM_003482.3	5045	-/G																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435710	49435711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	233	801	0	ENST00000301067.7:c.6172dup	p.Ala2058GlyfsTer10	p.A2058Gfs*10	ENST00000301067	NM_003482.3	2058	gcc/gGcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832925	3832925	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	105	499	0	ENST00000262367.5:c.1333A>G	p.Ile445Val	p.I445V	ENST00000262367	NM_004380.2	445	Atc/Gtc																																																																														
EP300	2033	MSKCC	GRCh37	22	41568611	41568611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	143	657	2	ENST00000263253.7:c.4561G>A	p.Glu1521Lys	p.E1521K	ENST00000263253	NM_001429.3	1521	Gaa/Aaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157495219	157495219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	111	622	1	ENST00000346085.5:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000346085	NM_020732.3	1035	Gaa/Aaa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139411726	139411726	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs377535397		P-0044604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	98	488	1	ENST00000277541.6:c.1553C>T	p.Thr518Met	p.T518M	ENST00000277541	NM_017617.3	518	aCg/aTg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577290	64577290	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs886039413		P-0044604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	326	679	0	ENST00000337652.1:c.292C>T	p.Arg98Ter	p.R98*	ENST00000337652	NM_130803.2	98	Cga/Tga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287316	33287325	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGATTGCT	TCTGATTGCT	-			P-0044604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	142	381	0	ENST00000374542.5:c.1772_1781del	p.Lys591ArgfsTer8	p.K591Rfs*8	ENST00000374542	NM_001141970.1	591	aAGCAATCAGAg/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	26	355	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0044641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	49	833	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87338617	87338617	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	236	407	0	ENST00000277120.3:c.713A>G	p.Lys238Arg	p.K238R	ENST00000277120		238	aAa/aGa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533763	63533763	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777283610		P-0044780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	114	643	0	ENST00000307078.5:c.1391C>T	p.Ser464Phe	p.S464F	ENST00000307078	NM_004655.3	464	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937422	178937422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	39	195	0	ENST00000263967.3:c.1810T>C	p.Cys604Arg	p.C604R	ENST00000263967	NM_006218.2	604	Tgt/Cgt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492687	56492687	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0044780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	78	443	0	ENST00000267101.3:c.2837A>T	p.Lys946Met	p.K946M	ENST00000267101	NM_001982.3	946	aAg/aTg																																																																														
VHL	7428	MSKCC	GRCh37	3	10183756	10183757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	122	613	0	ENST00000256474.2:c.227dup	p.Cys77LeufsTer55	p.C77Lfs*55	ENST00000256474	NM_000551.3	75	-/T																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702517	52702517	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0044780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	32	209	0	ENST00000394830.3:c.381T>G	p.Tyr127Ter	p.Y127*	ENST00000394830	NM_018313.4	127	taT/taG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	69	390	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717650	89717650	+	stop_gained	Nonsense_Mutation	SNP	T	T	G	rs1057520900		P-0044802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	90	439	0	ENST00000371953.3:c.675T>G	p.Tyr225Ter	p.Y225*	ENST00000371953	NM_000314.4	225	taT/taG																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690837	89690837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	29	267	0	ENST00000371953.3:c.245del	p.Asn82IlefsTer17	p.N82Ifs*17	ENST00000371953	NM_000314.4	82	Aat/at																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	97	308	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	47	470	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437565	56437566	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	142	520	0	ENST00000407977.2:c.896_897del	p.Val299GlyfsTer143	p.V299Gfs*143	ENST00000407977		299	gTG/g																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	66	690	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120480582	120480582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368918146		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	99	452	0	ENST00000256646.2:c.3235G>A	p.Val1079Ile	p.V1079I	ENST00000256646	NM_024408.3	1079	Gtt/Att																																																																														
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	85	315	1	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	74	327	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	121	632	4	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	65	299	0	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11169362	11169362	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	99	404	0	ENST00000361445.4:c.7513C>T	p.Arg2505Ter	p.R2505*	ENST00000361445	NM_004958.3	2505	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	172	728	0	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138645	55138645	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1031763557		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	119	414	0	ENST00000257290.5:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000257290	NM_006206.4	441	cCg/cTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201671	66201671	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773217274		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	93	369	0	ENST00000273854.3:c.2831C>T	p.Thr944Met	p.T944M	ENST00000273854	NM_004439.5	944	aCg/aTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911443	32911443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	70	339	0	ENST00000380152.3:c.2957del	p.Asn986IlefsTer5	p.N986Ifs*5	ENST00000380152		984	gAa/ga																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	143	485	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	107	499	1	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																														
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	136	711	0	ENST00000575354.2:c.3743del	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	17	139	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-	rs769920981		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	97	450	0	ENST00000291552.4:c.648_653del	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369295620		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	157	657	0	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845640	72845640	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354034		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	141	554	0	ENST00000268489.5:c.3700G>A	p.Asp1234Asn	p.D1234N	ENST00000268489	NM_006885.3	1234	Gat/Aat																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337603	73337603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	47	172	0	ENST00000377767.4:c.2113G>A	p.Ala705Thr	p.A705T	ENST00000377767	NM_014953.3	705	Gca/Aca																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	27	306	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	162	721	5	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	176	509	1	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	100	458	0	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138135	2138135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201206500		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	145	728	0	ENST00000219476.3:c.5155G>A	p.Ala1719Thr	p.A1719T	ENST00000219476	NM_000548.3	1719	Gca/Aca																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119909	70119910	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	62	514	1	ENST00000245479.2:c.916dup	p.Val306GlyfsTer272	p.V306Gfs*272	ENST00000245479	NM_000346.3	304	ccg/ccGg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741349	17741349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	136	663	0	ENST00000250003.3:c.20C>T	p.Pro7Leu	p.P7L	ENST00000250003	NM_002478.4	7	cCg/cTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	124	400	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149457719	149457719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149911279		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	164	591	0	ENST00000286301.3:c.685G>A	p.Val229Ile	p.V229I	ENST00000286301	NM_005211.3	229	Gtt/Att																																																																														
TEK	7010	MSKCC	GRCh37	9	27158026	27158026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	42	504	0	ENST00000380036.4:c.255del	p.Val86LeufsTer31	p.V86Lfs*31	ENST00000380036	NM_000459.3	84	Aaa/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339110	65339111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	101	460	2	ENST00000342505.4:c.425dup	p.Ile143AspfsTer9	p.I143Dfs*9	ENST00000342505	NM_002227.2	142	aag/aaAg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099427	157099432	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1234257273		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	26	336	0	ENST00000346085.5:c.381_386del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	122	CAGCAG/-																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207672	2207672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	126	548	0	ENST00000398665.3:c.956G>A	p.Arg319His	p.R319H	ENST00000398665	NM_032482.2	319	cGc/cAc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495050	56495050	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758743468		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	179	589	0	ENST00000267101.3:c.3407G>A	p.Arg1136His	p.R1136H	ENST00000267101	NM_001982.3	1136	cGc/cAc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271295	18271295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754343201		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	141	593	0	ENST00000222254.8:c.337G>A	p.Asp113Asn	p.D113N	ENST00000222254	NM_005027.3	113	Gac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941988	44941988	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	94	326	0	ENST00000377967.4:c.3241del	p.Thr1081ProfsTer2	p.T1081Pfs*2	ENST00000377967	NM_021140.2	1080	Aaa/aa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460475	149460476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs759017762		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	118	623	0	ENST00000286301.3:c.161dup	p.Ser55IlefsTer9	p.S55Ifs*9	ENST00000286301	NM_005211.3	54	cca/ccCa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168677	56168678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	112	366	0	ENST00000399503.3:c.1535dup	p.Ser513PhefsTer28	p.S513Ffs*28	ENST00000399503	NM_005921.1	511	tcc/tCcc																																																																														
SDHC	6391	MSKCC	GRCh37	1	161310419	161310419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778582853		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	34	379	0	ENST00000367975.2:c.215G>A	p.Arg72His	p.R72H	ENST00000367975	NM_003001.3	72	cGt/cAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133209276	133209276	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	52	733	0	ENST00000320574.5:c.6110C>A	p.Ala2037Asp	p.A2037D	ENST00000320574	NM_006231.2	2037	gCc/gAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032349	10032349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	105	390	0	ENST00000330684.3:c.474G>A	p.Met158Ile	p.M158I	ENST00000330684	NM_001134407.1	158	atG/atA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024380	16024380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148932674		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	67	294	0	ENST00000268712.3:c.1838C>T	p.Pro613Leu	p.P613L	ENST00000268712	NM_006311.3	613	cCg/cTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094973	11094973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	176	814	1	ENST00000344626.4:c.146C>A	p.Pro49Gln	p.P49Q	ENST00000344626	NM_003072.3	49	cCg/cAg																																																																														
RRAS	6237	MSKCC	GRCh37	19	50138859	50138859	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369588682		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	161	803	0	ENST00000246792.3:c.631G>A	p.Gly211Arg	p.G211R	ENST00000246792	NM_006270.3	211	Ggg/Agg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028096	48028096	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774755404		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	51	310	0	ENST00000234420.5:c.2974G>A	p.Glu992Lys	p.E992K	ENST00000234420	NM_000179.2	992	Gaa/Aaa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29120999	29120999	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	130	410	0	ENST00000328354.6:c.558T>G	p.Asn186Lys	p.N186K	ENST00000328354	NM_007194.3	186	aaT/aaG																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30648422	30648422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	144	605	0	ENST00000359013.4:c.47T>C	p.Leu16Pro	p.L16P	ENST00000359013	NM_001024847.2	16	cTg/cCg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119634972	119634972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	63	278	0	ENST00000316626.5:c.527G>A	p.Gly176Glu	p.G176E	ENST00000316626		176	gGa/gAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106156216	106156217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1392160935		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	69	307	0	ENST00000380013.4:c.1121dup	p.Asn374LysfsTer2	p.N374Kfs*2	ENST00000380013	NM_001127208.2	373	caa/cAaa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753129	57753129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	95	311	0	ENST00000274289.3:c.887G>T	p.Arg296Met	p.R296M	ENST00000274289	NM_006622.3	296	aGg/aTg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517963	176517963	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201257476		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	124	625	0	ENST00000292408.4:c.461G>A	p.Arg154His	p.R154H	ENST00000292408	NM_213647.1	154	cGc/cAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163432	32163432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	169	671	0	ENST00000375023.3:c.5794G>A	p.Gly1932Arg	p.G1932R	ENST00000375023	NM_004557.3	1932	Gga/Aga																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38272341	38272341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	130	555	0	ENST00000425967.3:c.2026G>A	p.Ala676Thr	p.A676T	ENST00000425967	NM_001174067.1	676	Gca/Aca																																																																														
NBN	4683	MSKCC	GRCh37	8	90995030	90995030	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876658553		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	124	395	0	ENST00000265433.3:c.91T>C	p.Cys31Arg	p.C31R	ENST00000265433	NM_002485.4	31	Tgt/Cgt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400110	139400110	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371068504		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	186	793	0	ENST00000277541.6:c.4238G>A	p.Arg1413His	p.R1413H	ENST00000277541	NM_017617.3	1413	cGt/cAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409111	139409111	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	134	752	0	ENST00000277541.6:c.2058del	p.Cys687AlafsTer85	p.C687Afs*85	ENST00000277541	NM_017617.3	686	ccC/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285056	15285056	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774386192		P-0044805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	138	736	0	ENST00000263388.2:c.4559C>T	p.Pro1520Leu	p.P1520L	ENST00000263388	NM_000435.2	1520	cCg/cTg																																																																														
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	192	300	1	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831069	72831069	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	247	468	0	ENST00000268489.5:c.5512C>T	p.Gln1838Ter	p.Q1838*	ENST00000268489	NM_006885.3	1838	Cag/Tag																																																																														
PALB2	79728	MSKCC	GRCh37	16	23634326	23634328	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	265	478	0	ENST00000261584.4:c.2958_2960del	p.Asp986_Gln987delinsGlu	p.D986_Q987delinsE	ENST00000261584	NM_024675.3	986	gaTCAa/gaa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226314	2226314	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	488	994	0	ENST00000398665.3:c.3794C>G	p.Ser1265Cys	p.S1265C	ENST00000398665	NM_032482.2	1265	tCc/tGc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793309	33793330	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GGCCGACTCCATGGGGGAGTTA	GGCCGACTCCATGGGGGAGTTA	-			P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	76	225	1	ENST00000498907.2:c.-10_12del		p.*4*	ENST00000498907	NM_004364.3																																																																																
MDC1	9656	MSKCC	GRCh37	6	30671666	30671666	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	189	715	0	ENST00000376406.3:c.5294A>T	p.Glu1765Val	p.E1765V	ENST00000376406	NM_014641.2	1765	gAa/gTa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117862890	117862903	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCTCCTTCTCTT	TTTCTCCTTCTCTT	-			P-0044808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	259	412	0	ENST00000297338.2:c.1574_1587del	p.Lys525ArgfsTer7	p.K525Rfs*7	ENST00000297338	NM_006265.2	525	aAAGAGAAGGAGAAA/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0044817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	464	955	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674233	86674233	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1463885690		P-0044817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	124	301	0	ENST00000274376.6:c.2365C>T	p.Arg789Ter	p.R789*	ENST00000274376	NM_002890.2	789	Cga/Tga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435294	121435294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	292	848	0	ENST00000257555.6:c.1327G>T	p.Ala443Ser	p.A443S	ENST00000257555		443	Gca/Tca																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016264	150016264	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	184	437	0	ENST00000253339.5:c.442C>T	p.Arg148Ter	p.R148*	ENST00000253339		148	Cga/Tga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120879	115120879	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs978439271		P-0044817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	223	651	0	ENST00000257566.3:c.127G>A	p.Ala43Thr	p.A43T	ENST00000257566	NM_016569.3	43	Gcg/Acg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061291	38061291	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	332	779	0	ENST00000250448.2:c.698G>C	p.Arg233Pro	p.R233P	ENST00000250448	NM_004496.3	233	cGc/cCc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975502	13975502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	143	306	0	ENST00000405192.2:c.385C>A	p.Gln129Lys	p.Q129K	ENST00000405192	NM_001163147.1	129	Caa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0044857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	107	310	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0044857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	159	338	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023811	27023811	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1470097993		P-0044857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	127	300	0	ENST00000324856.7:c.920del	p.Gly307AlafsTer56	p.G307Afs*56	ENST00000324856	NM_006015.4	306	cGg/cg																																																																														
MED12	9968	MSKCC	GRCh37	X	70338671	70338671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	181	513	1	ENST00000374080.3:c.67G>T	p.Asp23Tyr	p.D23Y	ENST00000374080		23	Gat/Tat																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589625	67589627	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0044857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	38	171	0	ENST00000274335.5:c.1390_1392del	p.Asp464del	p.D464del	ENST00000274335		463	tATGat/tat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66242741	66242741	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777294375		P-0044857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	126	272	2	ENST00000273854.3:c.1831G>A	p.Ala611Thr	p.A611T	ENST00000273854	NM_004439.5	611	Gct/Act																																																																														
MITF	4286	MSKCC	GRCh37	3	69987130	69987130	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1328440915		P-0044857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	196	411	0	ENST00000352241.4:c.512C>A	p.Pro171Gln	p.P171Q	ENST00000352241	NM_198159.2	171	cCg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	100	245	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	341	685	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925523	114925523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780741000		P-0044862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	319	659	1	ENST00000543371.1:c.1601C>T	p.Pro534Leu	p.P534L	ENST00000543371	NM_001198531.1	534	cCg/cTg																																																																														
RET	5979	MSKCC	GRCh37	10	43615546	43615546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	234	600	0	ENST00000355710.3:c.2625G>C	p.Leu875Phe	p.L875F	ENST00000355710	NM_020975.4	875	ttG/ttC																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348506	89348506	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs973573531		P-0044862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	478	765	0	ENST00000301030.4:c.4444G>A	p.Asp1482Asn	p.D1482N	ENST00000301030	NM_001256183.1	1482	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713367	40713367	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	813	761	0	ENST00000373198.4:c.4148A>G	p.Gln1383Arg	p.Q1383R	ENST00000373198	NM_133170.3	1383	cAg/cGg																																																																														
KIT	3815	MSKCC	GRCh37	4	55565832	55565832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	106	532	0	ENST00000288135.5:c.656C>A	p.Ala219Glu	p.A219E	ENST00000288135	NM_000222.2	219	gCa/gAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140476794	140476794	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	217	462	0	ENST00000288602.6:c.1612T>G	p.Tyr538Asp	p.Y538D	ENST00000288602	NM_004333.4	538	Tat/Gat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436956	49436957	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0044862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	406	716	0	ENST00000301067.7:c.5546_5547delinsA	p.Gly1849GlufsTer3	p.G1849Efs*3	ENST00000301067	NM_003482.3	1849	gGG/gA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876660821		P-0044883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	445	561	1	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG																																																																														
APC	324	MSKCC	GRCh37	5	112174502	112174502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876659539		P-0044883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	50	281	0	ENST00000257430.4:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000257430	NM_000038.5	1071	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0044883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	35	168	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149513527	149513527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	169	569	1	ENST00000261799.4:c.676C>T	p.Arg226Cys	p.R226C	ENST00000261799	NM_002609.3	226	Cgc/Tgc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956781	68956781	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1320143244		P-0044883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	194	604	0	ENST00000288368.4:c.899T>C	p.Ile300Thr	p.I300T	ENST00000288368	NM_024870.2	300	aTc/aCc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410621	63410621	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	126	653	0	ENST00000330258.3:c.2546A>C	p.His849Pro	p.H849P	ENST00000330258	NM_152424.3	849	cAt/cCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0044919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	350	564	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
ALK	238	MSKCC	GRCh37	2	29551215	29551215	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs777414641		P-0044919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	59	469	0	ENST00000389048.3:c.1414+1G>A		p.X472_splice	ENST00000389048	NM_004304.4	472																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968017	18968155	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGTGGCCAGGTGGTGTCCTGTGCATCCTGGGGCCCCTACTTCCTTGCTAGTGTGTGTTGAGGCTGATTCACACCTGAGCTTCTTGACTTGTGGGGGCCCCTGTTCCTACAGCTGATCCTTGTAGGCGACCACTGCCAG	CTGTGGCCAGGTGGTGTCCTGTGCATCCTGGGGCCCCTACTTCCTTGCTAGTGTGTGTTGAGGCTGATTCACACCTGAGCTTCTTGACTTGTGGGGGCCCCTGTTCCTACAGCTGATCCTTGTAGGCGACCACTGCCAG	-			P-0044919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	44	253	0	ENST00000262803.5:c.1969-109_1998del		p.X657_splice	ENST00000262803	NM_002911.3	657																																																																															
NF2	4771	MSKCC	GRCh37	22	30067818	30067818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	44	316	0	ENST00000338641.4:c.1003G>A	p.Glu335Lys	p.E335K	ENST00000338641	NM_000268.3	335	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860758	151860758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	63	425	0	ENST00000262189.6:c.9904C>T	p.Pro3302Ser	p.P3302S	ENST00000262189	NM_170606.2	3302	Ccc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	66	319	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578443	7578444	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	168	711	0	ENST00000269305.4:c.486dup	p.Tyr163LeufsTer18	p.Y163Lfs*18	ENST00000269305	NM_001126112.2	162	-/C																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	130	602	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	278	694	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913381		P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	311	509	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913381		P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	311	509	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913381		P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	311	509	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	381	611	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930393	39930393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	192	350	1	ENST00000378444.4:c.3071C>T	p.Ser1024Leu	p.S1024L	ENST00000378444	NM_001123385.1	1024	tCa/tTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242475	55242475	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057520037		P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	157	398	0	ENST00000275493.2:c.2245G>C	p.Glu749Gln	p.E749Q	ENST00000275493	NM_005228.3	749	Gaa/Caa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100915	41100915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	173	593	0	ENST00000373198.4:c.1441G>A	p.Glu481Lys	p.E481K	ENST00000373198	NM_133170.3	481	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	315	855	1	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845922	156845922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	312	893	0	ENST00000524377.1:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000524377	NM_002529.3	518	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	41999952	41999952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	83	529	0	ENST00000219905.7:c.2215C>T	p.Pro739Ser	p.P739S	ENST00000219905	NM_001164273.1	739	Cca/Tca																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938567	44938567	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	200	448	0	ENST00000377967.4:c.3115C>T	p.Gln1039Ter	p.Q1039*	ENST00000377967	NM_021140.2	1039	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557373	187557373	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs874111		P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	108	470	0	ENST00000441802.2:c.3989A>G	p.Asn1330Ser	p.N1330S	ENST00000441802	NM_005245.3	1330	aAt/aGt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748601	40748601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200545231		P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	67	421	0	ENST00000373198.4:c.2915G>A	p.Arg972Gln	p.R972Q	ENST00000373198	NM_133170.3	972	cGa/cAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	413	594	0	ENST00000304494.5:c.355G>A	p.Glu119Lys	p.E119K	ENST00000304494	NM_000077.4	119	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	170	428	0				ENST00000310581	NM_198253.2																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242416	55242416	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	146	335	0	ENST00000275493.2:c.2186G>A	p.Gly729Glu	p.G729E	ENST00000275493	NM_005228.3	729	gGa/gAa																																																																														
SETD8	0	MSKCC	GRCh37	12	123892056	123892056	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	263	428	0	ENST00000330479.4:c.865G>C	p.Glu289Gln	p.E289Q	ENST00000330479	NM_020382.3	289	Gag/Cag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912933	32912933	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	79	531	0	ENST00000380152.3:c.4441G>C	p.Glu1481Gln	p.E1481Q	ENST00000380152		1481	Gag/Cag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914835	32914835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	76	499	0	ENST00000380152.3:c.6343G>C	p.Glu2115Gln	p.E2115Q	ENST00000380152		2115	Gag/Cag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915032	32915032	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs398122560		P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	97	599	0	ENST00000380152.3:c.6540G>C	p.Leu2180Phe	p.L2180F	ENST00000380152		2180	ttG/ttC																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281598	49281598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	122	763	0	ENST00000282018.3:c.645C>G	p.Phe215Leu	p.F215L	ENST00000282018	NM_020377.2	215	ttC/ttG																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136365	2136365	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886051795		P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	215	695	0	ENST00000219476.3:c.4834G>A	p.Asp1612Asn	p.D1612N	ENST00000219476	NM_000548.3	1612	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828391	72828391	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	166	554	0	ENST00000268489.5:c.8190C>G	p.Ile2730Met	p.I2730M	ENST00000268489	NM_006885.3	2730	atC/atG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830235	72830235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	129	416	0	ENST00000268489.5:c.6346C>T	p.Pro2116Ser	p.P2116S	ENST00000268489	NM_006885.3	2116	Ccg/Tcg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16046958	16046958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	183	416	0	ENST00000268712.3:c.1135G>C	p.Glu379Gln	p.E379Q	ENST00000268712	NM_006311.3	379	Gag/Cag																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369246	40369246	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	182	556	0	ENST00000293328.3:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000293328	NM_012448.3	438	Gaa/Taa																																																																														
YES1	7525	MSKCC	GRCh37	18	724549	724549	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	102	247	0	ENST00000314574.4:c.1507G>T	p.Glu503Ter	p.E503*	ENST00000314574	NM_005433.3	503	Gaa/Taa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264644	46264644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	60	286	0	ENST00000371998.3:c.1514C>G	p.Ser505Cys	p.S505C	ENST00000371998		505	tCt/tGt																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169988314	169988314	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	43	327	0	ENST00000295797.4:c.556G>C	p.Val186Leu	p.V186L	ENST00000295797	NM_002740.5	186	Gtc/Ctc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803208	1803209	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	619	819	3	ENST00000260795.2:c.560_561delinsGT	p.Ser187Cys	p.S187C	ENST00000260795		187	tCC/tGT																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750526	57750526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs954831050		P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	162	443	0	ENST00000274289.3:c.1942G>A	p.Glu648Lys	p.E648K	ENST00000274289	NM_006622.3	648	Gag/Aag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911595	131911595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	148	309	0	ENST00000265335.6:c.340C>G	p.Leu114Val	p.L114V	ENST00000265335		114	Ctg/Gtg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931753	39931753	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	316	648	1	ENST00000378444.4:c.2846C>G	p.Ser949Ter	p.S949*	ENST00000378444	NM_001123385.1	949	tCa/tGa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038856	47038856	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	379	770	0	ENST00000329236.7:c.632C>G	p.Ser211Ter	p.S211*	ENST00000329236	NM_001204466.1	211	tCa/tGa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939463	76939463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	121	689	0	ENST00000373344.5:c.1285A>G	p.Thr429Ala	p.T429A	ENST00000373344	NM_000489.3	429	Acc/Gcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	36	403	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0044967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	50	304	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0044967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	33	445	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729892	41729892	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762543780		P-0044967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	52	550	0	ENST00000242208.4:c.637G>A	p.Ala213Thr	p.A213T	ENST00000242208	NM_002192.2	213	Gct/Act																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094413	27094413	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	82	546	0	ENST00000324856.7:c.3121del	p.Leu1041CysfsTer18	p.L1041Cfs*18	ENST00000324856	NM_006015.4	1041	Ctg/tg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692913	89692914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	36	471	0	ENST00000371953.3:c.398dup	p.Met134AsnfsTer46	p.M134Nfs*46	ENST00000371953	NM_000314.4	133	gta/gTta																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197282	94197282	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	28	321	0	ENST00000323929.3:c.1222del	p.Thr408GlnfsTer20	p.T408Qfs*20	ENST00000323929	NM_005591.3	408	Aca/ca																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713265	43713265	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs969434400		P-0044967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	48	905	2	ENST00000382044.4:c.4208G>A	p.Arg1403His	p.R1403H	ENST00000382044	NM_001141980.1	1403	cGt/cAt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655414	67655414	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	33	518	0	ENST00000264010.4:c.1280del	p.Leu427TyrfsTer20	p.L427Yfs*20	ENST00000264010	NM_006565.3	426	aTt/at																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287623	33287623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	38	473	1	ENST00000374542.5:c.1474G>A	p.Gly492Arg	p.G492R	ENST00000374542	NM_001141970.1	492	Gga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	50	244	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PARP1	142	MSKCC	GRCh37	1	226550826	226550826	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	45	312	0	ENST00000366794.5:c.2822T>A	p.Leu941Ter	p.L941*	ENST00000366794	NM_001618.3	941	tTa/tAa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0044993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	128	306	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29588751	29588751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs760703505		P-0044993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	114	224	2	ENST00000358273.4:c.4600C>T	p.Arg1534Ter	p.R1534*	ENST00000358273	NM_001042492.2	1534	Cga/Tga																																																																														
KIT	3815	MSKCC	GRCh37	4	55599266	55599266	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	155	270	0	ENST00000288135.5:c.2392A>G	p.Ile798Val	p.I798V	ENST00000288135	NM_000222.2	798	Atc/Gtc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656263	18656263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762092026		P-0044993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	124	365	0	ENST00000266497.5:c.2942G>A	p.Arg981His	p.R981H	ENST00000266497		981	cGc/cAc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163309266	163309266	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs144627000		P-0044993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	85	223	0	ENST00000271452.3:c.605C>T	p.Thr202Met	p.T202M	ENST00000271452	NM_145697.2	202	aCg/aTg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740794	58740794	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1487712457		P-0044993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	288	503	0	ENST00000305921.3:c.1699C>T	p.Pro567Ser	p.P567S	ENST00000305921	NM_003620.3	567	Ccc/Tcc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742933	17742933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	19	690	0	ENST00000250003.3:c.841C>T	p.Arg281Cys	p.R281C	ENST00000250003	NM_002478.4	281	Cgc/Tgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929334	32929334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	30	328	0	ENST00000380152.3:c.7344G>C	p.Lys2448Asn	p.K2448N	ENST00000380152		2448	aaG/aaC																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350549	89350552	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-	rs797045027		P-0045010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	90	531	0	ENST00000301030.4:c.2398_2401del	p.Glu800AsnfsTer62	p.E800Nfs*62	ENST00000301030	NM_001256183.1	800	GAAAaa/aa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442599	52442604	+	inframe_deletion	In_Frame_Del	DEL	AGGAAG	AGGAAG	-			P-0045010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	92	281	0	ENST00000460680.1:c.141_146del	p.Ile47_Leu49delinsMet	p.I47_L49delinsM	ENST00000460680	NM_004656.3	47	atCTTCCTg/atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0045237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	103	618	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	80	257	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	71	337	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	114	296	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	17	432	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375544	15375544	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1405614933		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	141	750	0	ENST00000263377.2:c.883A>C	p.Thr295Pro	p.T295P	ENST00000263377	NM_058243.2	295	Acc/Ccc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	38	230	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	91	304	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	82	206	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	135	657	6	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12647737	12647737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773051648		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	59	223	0	ENST00000251849.4:c.643C>T	p.Arg215Cys	p.R215C	ENST00000251849	NM_002880.3	215	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	55	307	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	135	539	2	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620470	52620470	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	25	360	0	ENST00000394830.3:c.3283C>T	p.Arg1095Ter	p.R1095*	ENST00000394830	NM_018313.4	1095	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	71	227	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	80	330	2	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	43	268	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716335	52716335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	166	535	1	ENST00000322088.6:c.779G>A	p.Arg260His	p.R260H	ENST00000322088	NM_014225.5	260	cGc/cAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	114	503	2	ENST00000440232.2:c.342del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088659	27088659	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	128	573	0	ENST00000324856.7:c.2272del	p.Gln758ArgfsTer75	p.Q758Rfs*75	ENST00000324856	NM_006015.4	756	aaC/aa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	17	317	0	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5240271	5240271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	141	774	0	ENST00000357368.4:c.1643del	p.Pro548ArgfsTer37	p.P548Rfs*37	ENST00000357368	NM_002850.3	548	cCg/cg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	70	732	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653833	89653833	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1085308042		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	58	293	0	ENST00000371953.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000371953	NM_000314.4	44	gGc/gAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	50	904	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400299	139400299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150343794		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	159	741	1	ENST00000277541.6:c.4049G>A	p.Arg1350His	p.R1350H	ENST00000277541	NM_017617.3	1350	cGt/cAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42058576	42058577	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	43	181	0	ENST00000219905.7:c.8301_8302del	p.Arg2767SerfsTer10	p.R2767Sfs*10	ENST00000219905	NM_001164273.1	2766	GAg/g																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26101081	26101081	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	111	455	1	ENST00000435504.4:c.11del	p.Lys4ArgfsTer18	p.K4Rfs*18	ENST00000435504		4	aAg/ag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411384	63411384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149055969		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	161	686	1	ENST00000330258.3:c.1783G>A	p.Ala595Thr	p.A595T	ENST00000330258	NM_152424.3	595	Gcc/Acc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607663	46607663	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1259062822		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	200	627	0	ENST00000263734.3:c.1852C>T	p.Pro618Ser	p.P618S	ENST00000263734	NM_001430.4	618	Cca/Tca																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074250	8074250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	107	352	2	ENST00000377482.5:c.409C>A	p.Pro137Thr	p.P137T	ENST00000377482	NM_018948.3	137	Cct/Act																																																																														
TSC2	7249	MSKCC	GRCh37	16	2105492	2105492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	111	403	1	ENST00000219476.3:c.571C>A	p.Leu191Ile	p.L191I	ENST00000219476	NM_000548.3	191	Ctc/Atc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647460	3647460	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776394340		P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	191	715	0	ENST00000294008.3:c.1603G>A	p.Ala535Thr	p.A535T	ENST00000294008	NM_032444.2	535	Gca/Aca																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619266	37619268	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	99	387	1	ENST00000447079.4:c.945_947del	p.Arg315del	p.R315del	ENST00000447079	NM_015083.1	314	gaAAGa/gaa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265032	10265032	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	136	410	0	ENST00000340748.4:c.1908T>G	p.Ile636Met	p.I636M	ENST00000340748		636	atT/atG																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965826	18965826	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	108	554	0	ENST00000262803.5:c.1407del	p.Asp470ThrfsTer10	p.D470Tfs*10	ENST00000262803	NM_002911.3	468	ctC/ct																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693911	47693911	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	46	302	0	ENST00000233146.2:c.1625T>C	p.Val542Ala	p.V542A	ENST00000233146	NM_000251.2	542	gTa/gCa																																																																														
INHA	3623	MSKCC	GRCh37	2	220437350	220437350	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	140	702	3	ENST00000243786.2:c.257del	p.Phe86SerfsTer41	p.F86Sfs*41	ENST00000243786	NM_002191.3	85	cTt/ct																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661392	227661392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	134	461	0	ENST00000305123.5:c.2063C>T	p.Ala688Val	p.A688V	ENST00000305123	NM_005544.2	688	gCc/gTc																																																																														
ATR	545	MSKCC	GRCh37	3	142211979	142211980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	52	268	0	ENST00000350721.4:c.6072dup	p.Tyr2025IlefsTer2	p.Y2025Ifs*2	ENST00000350721	NM_001184.3	2024	-/A																																																																														
ATR	545	MSKCC	GRCh37	3	142241587	142241587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	56	267	0	ENST00000350721.4:c.4249G>A	p.Ala1417Thr	p.A1417T	ENST00000350721	NM_001184.3	1417	Gct/Act																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430951	181430951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	43	764	2	ENST00000325404.1:c.803G>A	p.Gly268Glu	p.G268E	ENST00000325404	NM_003106.3	268	gGg/gAg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675181	176675181	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	47	139	1	ENST00000439151.2:c.4498-1G>T		p.X1500_splice	ENST00000439151	NM_022455.4	1500																																																																															
STK19	8859	MSKCC	GRCh37	6	31948454	31948454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	83	313	0	ENST00000375331.2:c.925G>A	p.Val309Ile	p.V309I	ENST00000375331	NM_004197.1	309	Gtc/Atc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805755	32805755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	61	633	0	ENST00000374899.4:c.256del	p.Ala86ProfsTer34	p.A86Pfs*34	ENST00000374899	NM_018833.2	86	Gcc/cc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138198230	138198230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	47	183	0	ENST00000237289.4:c.823C>T	p.Leu275Phe	p.L275F	ENST00000237289	NM_001270507.1	275	Ctt/Ttt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98232200	98232202	+	inframe_deletion	In_Frame_Del	DEL	ACT	ACT	-			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	69	217	0	ENST00000331920.6:c.1740_1742del	p.Val582del	p.V582del	ENST00000331920	NM_000264.3	580	gtAGTg/gtg																																																																														
BTK	695	MSKCC	GRCh37	X	100629616	100629616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	71	298	1	ENST00000308731.7:c.148G>T	p.Gly50Cys	p.G50C	ENST00000308731	NM_000061.2	50	Ggc/Tgc																																																																														
XIAP	331	MSKCC	GRCh37	X	123022525	123022525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	119	466	2	ENST00000355640.3:c.934C>T	p.Pro312Ser	p.P312S	ENST00000355640		312	Ccc/Tcc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217339	123217339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	47	429	0	ENST00000218089.9:c.2993C>T	p.Ala998Val	p.A998V	ENST00000218089	NM_001042749.1	998	gCa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	101	310	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162748512	162748512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	97	277	0	ENST00000367921.3:c.2426G>A	p.Gly809Glu	p.G809E	ENST00000367921	NM_006182.2	809	gGg/gAg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0046024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	12	53	0	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913351		P-0046024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	87	308	1	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952086	178952086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	56	311	0	ENST00000263967.3:c.3141T>A	p.His1047Gln	p.H1047Q	ENST00000263967	NM_006218.2	1047	caT/caA																																																																														
PARK2	0	MSKCC	GRCh37	6	162622179	162622179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781608005		P-0046024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	81	265	0	ENST00000366898.1:c.518C>T	p.Thr173Met	p.T173M	ENST00000366898	NM_004562.2	173	aCg/aTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52598110	52598110	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	102	388	0	ENST00000394830.3:c.3756T>G	p.Phe1252Leu	p.F1252L	ENST00000394830	NM_018313.4	1252	ttT/ttG																																																																														
ATRX	546	MSKCC	GRCh37	X	76778785	76778787	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0046215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	144	247	0	ENST00000373344.5:c.6792_6794del	p.Glu2265del	p.E2265del	ENST00000373344	NM_000489.3	2264	gaAGAg/gag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	65	288	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519742		P-0047235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	51	787	0	ENST00000078429.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000078429	NM_002067.2	209	cAg/cCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0047235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	34	353	1				ENST00000310581	NM_198253.2																																																																																
SPEN	23013	MSKCC	GRCh37	1	16257642	16257642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	31	384	1	ENST00000375759.3:c.4907C>T	p.Ser1636Phe	p.S1636F	ENST00000375759	NM_015001.2	1636	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55970916	55970916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	21	397	0	ENST00000263923.4:c.1881G>A	p.Met627Ile	p.M627I	ENST00000263923	NM_002253.2	627	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0047611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	171	804	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0047611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	20	430	3	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0047611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	74	614	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944943	31944943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	50	449	0	ENST00000340398.3:c.158G>A	p.Arg53His	p.R53H	ENST00000340398	NM_001013699.2	53	cGt/cAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711034	114711034	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0047611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	153	213	0	ENST00000543371.1:c.256+2T>A		p.X86_splice	ENST00000543371	NM_001198531.1	86																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	64	291	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395738	45395738	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	36	312	0	ENST00000262160.6:c.396G>A	p.Trp132Ter	p.W132*	ENST00000262160	NM_005901.5	132	tgG/tgA																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	20	367	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																														
ETV6	2120	MSKCC	GRCh37	12	12038929	12038929	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	94	220	0	ENST00000396373.4:c.1222A>T	p.Arg408Trp	p.R408W	ENST00000396373	NM_001987.4	408	Agg/Tgg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323096	31323096	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	20	917	1	ENST00000412585.2:c.893G>A	p.Trp298Ter	p.W298*	ENST00000412585	NM_005514.6	298	tGg/tAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374349	118374349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	15	324	0	ENST00000534358.1:c.7742C>A	p.Thr2581Asn	p.T2581N	ENST00000534358	NM_005933.3	2581	aCc/aAc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477191	67477191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	96	500	0	ENST00000327367.4:c.998A>T	p.Lys333Met	p.K333M	ENST00000327367	NM_005902.3	333	aAg/aTg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374903	45374903	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	42	435	0	ENST00000262160.6:c.940G>C	p.Gly314Arg	p.G314R	ENST00000262160	NM_005901.5	314	Ggt/Cgt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786863	135786863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs118203483		P-0047736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	36	433	0	ENST00000298552.3:c.1006C>T	p.Arg336Trp	p.R336W	ENST00000298552	NM_001162426.1	336	Cgg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	89	449	1	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																														
VHL	7428	MSKCC	GRCh37	3	10183771	10183771	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	192	832	0	ENST00000256474.2:c.240T>A	p.Ser80Arg	p.S80R	ENST00000256474	NM_000551.3	80	agT/agA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	150	394	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0049743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	81	446	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0049743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	254	341	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0049743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	15	412	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625218	69625218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	379	904	1	ENST00000334134.2:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000334134	NM_005247.2	192	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946901	71946901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748853590		P-0049743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	331	774	1	ENST00000298229.2:c.2750G>A	p.Arg917His	p.R917H	ENST00000298229	NM_001567.3	917	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	167	240	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0000514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	140	311	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
CDH1	999	MSKCC	GRCh37	16	68771321	68771321	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs878854691		P-0000514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	102	156	0	ENST00000261769.5:c.3G>A	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	atG/atA																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289495	33289495	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0001401-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			177	31	286	0	ENST00000374542.5:c.207+1G>A		p.X69_splice	ENST00000374542	NM_001141970.1	69																																																																															
TSC2	7249	MSKCC	GRCh37	16	2103424	2103424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001401-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			48	12	209	0	ENST00000219476.3:c.307G>C	p.Ala103Pro	p.A103P	ENST00000219476	NM_000548.3	103	Gct/Cct																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138228	2138228	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs45517407		P-0001401-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			52	12	217	1	ENST00000219476.3:c.5161A>G	p.Met1721Val	p.M1721V	ENST00000219476	NM_000548.3	1721	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	139	462	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
CARD11	84433	MSKCC	GRCh37	7	2962834	2962834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778151		P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	51	515	0	ENST00000396946.4:c.2074G>A	p.Val692Met	p.V692M	ENST00000396946	NM_032415.4	692	Gtg/Atg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475063	40475063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	104	641	0	ENST00000264657.5:c.1847A>G	p.Glu616Gly	p.E616G	ENST00000264657	NM_139276.2	616	gAa/gGa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495239	212495239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	161	414	0	ENST00000342788.4:c.2027G>T	p.Arg676Ile	p.R676I	ENST00000342788	NM_005235.2	676	aGa/aTa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225370719	225370719	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	181	410	0	ENST00000264414.4:c.1160A>T	p.Tyr387Phe	p.Y387F	ENST00000264414	NM_003590.4	387	tAc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55972913	55972913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	57	412	1	ENST00000263923.4:c.1477G>T	p.Gly493Ter	p.G493*	ENST00000263923	NM_002253.2	493	Gga/Tga																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56171080	56171080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	72	324	0	ENST00000399503.3:c.1908C>G	p.Cys636Trp	p.C636W	ENST00000399503	NM_005921.1	636	tgC/tgG																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289543	33289543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	105	402	0	ENST00000374542.5:c.160G>T	p.Gly54Cys	p.G54C	ENST00000374542	NM_001141970.1	54	Ggc/Tgc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609870	117609870	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1406518415		P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	58	557	0	ENST00000368508.3:c.6829C>G	p.Leu2277Val	p.L2277V	ENST00000368508	NM_002944.2	2277	Ctt/Gtt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730031	41730031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1244	162	802	0	ENST00000242208.4:c.498G>C	p.Arg166Ser	p.R166S	ENST00000242208	NM_002192.2	166	agG/agC																																																																														
CDK6	1021	MSKCC	GRCh37	7	92354968	92354968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	116	371	0	ENST00000265734.4:c.509A>G	p.Tyr170Cys	p.Y170C	ENST00000265734	NM_001259.6	170	tAt/tGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151932979	151932979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	17	52	0	ENST00000262189.6:c.2692G>C	p.Gly898Arg	p.G898R	ENST00000262189	NM_170606.2	898	Ggt/Cgt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852044	63852044	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	40	297	0	ENST00000279873.7:c.2822A>C	p.Gln941Pro	p.Q941P	ENST00000279873	NM_032199.2	941	cAg/cCg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852655	63852655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	108	370	0	ENST00000279873.7:c.3433G>T	p.Ala1145Ser	p.A1145S	ENST00000279873	NM_032199.2	1145	Gct/Tct																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88659795	88659795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	34	314	0	ENST00000372037.3:c.442G>A	p.Asp148Asn	p.D148N	ENST00000372037	NM_004329.2	148	Gat/Aat																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742473	17742473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1288774741		P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	59	629	1	ENST00000250003.3:c.655G>A	p.Gly219Ser	p.G219S	ENST00000250003	NM_002478.4	219	Ggc/Agc																																																																														
WT1	7490	MSKCC	GRCh37	11	32438037	32438037	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	53	468	0	ENST00000332351.3:c.1000A>C	p.Asn334His	p.N334H	ENST00000332351	NM_024426.4	334	Aac/Cac																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129169	64129169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746466314		P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	74	449	0	ENST00000334205.4:c.707C>T	p.Ser236Leu	p.S236L	ENST00000334205	NM_003942.2	236	tCg/tTg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573210	64573210	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	77	506	0	ENST00000337652.1:c.1097A>G	p.Tyr366Cys	p.Y366C	ENST00000337652	NM_130803.2	366	tAc/tGc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376287	118376287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	89	658	0	ENST00000534358.1:c.9680C>G	p.Ser3227Cys	p.S3227C	ENST00000534358	NM_005933.3	3227	tCt/tGt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404932	404932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	71	433	0	ENST00000399788.2:c.4262G>T	p.Arg1421Leu	p.R1421L	ENST00000399788	NM_001042603.1	1421	cGg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435020	49435020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	28	299	0	ENST00000301067.7:c.6533G>T	p.Gly2178Val	p.G2178V	ENST00000301067	NM_003482.3	2178	gGa/gTa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112127	115112127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	51	555	0	ENST00000257566.3:c.1613G>T	p.Gly538Val	p.G538V	ENST00000257566	NM_016569.3	538	gGc/gTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133234453	133234453	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	80	383	0	ENST00000320574.5:c.3378+1G>T		p.X1126_splice	ENST00000320574	NM_006231.2	1126																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008059	29008059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	72	411	0	ENST00000282397.4:c.710C>T	p.Pro237Leu	p.P237L	ENST00000282397	NM_002019.4	237	cCa/cTa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008333	29008333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	81	412	0	ENST00000282397.4:c.538G>T	p.Asp180Tyr	p.D180Y	ENST00000282397	NM_002019.4	180	Gat/Tat																																																																														
MGA	23269	MSKCC	GRCh37	15	42059085	42059085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	210	815	0	ENST00000219905.7:c.8805G>T	p.Lys2935Asn	p.K2935N	ENST00000219905	NM_001164273.1	2935	aaG/aaT																																																																														
NF1	4763	MSKCC	GRCh37	17	29528177	29528177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	100	292	0	ENST00000358273.4:c.1185G>T	p.Lys395Asn	p.K395N	ENST00000358273	NM_001042492.2	395	aaG/aaT																																																																														
NF1	4763	MSKCC	GRCh37	17	29557943	29557943	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	30	244	0	ENST00000358273.4:c.3197G>T	p.Arg1066Ile	p.R1066I	ENST00000358273	NM_001042492.2	1066	aGa/aTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29585461	29585461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	97	357	0	ENST00000358273.4:c.4273G>T	p.Gly1425Trp	p.G1425W	ENST00000358273	NM_001042492.2	1425	Ggg/Tgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599993	10599993	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	93	564	0	ENST00000171111.5:c.1583A>C	p.Gln528Pro	p.Q528P	ENST00000171111	NM_203500.1	528	cAg/cCg																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308066	30308066	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs776946024		P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	88	428	0	ENST00000262643.3:c.203G>T	p.Cys68Phe	p.C68F	ENST00000262643	NM_001238.2	68	tGt/tTt																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308356	30308356	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	80	512	0	ENST00000262643.3:c.370G>T	p.Glu124Ter	p.E124*	ENST00000262643	NM_001238.2	124	Gaa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944509	40944509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	101	556	0	ENST00000373198.4:c.1993G>T	p.Ala665Ser	p.A665S	ENST00000373198	NM_133170.3	665	Gct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419951	41419951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	104	517	0	ENST00000373198.4:c.370G>T	p.Val124Leu	p.V124L	ENST00000373198	NM_133170.3	124	Gtg/Ttg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411621	63411621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	129	314	0	ENST00000330258.3:c.1546G>C	p.Glu516Gln	p.E516Q	ENST00000330258	NM_152424.3	516	Gag/Cag																																																																														
MED12	9968	MSKCC	GRCh37	X	70344937	70344937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	129	363	0	ENST00000374080.3:c.2167G>C	p.Gly723Arg	p.G723R	ENST00000374080		723	Ggg/Cgg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15964751	15964751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	153	467	0	ENST00000268712.3:c.5845del	p.Glu1949AsnfsTer27	p.E1949Nfs*27	ENST00000268712	NM_006311.3	1949	Gaa/aa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449776	8449778	+	stop_gained	Nonsense_Mutation	ONP	GTG	GTG	TTT			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	132	409	2	ENST00000356435.5:c.3935_3937delinsAAA	p.Ser1312_His1313delinsTer	p.S1312_H1313delins*	ENST00000356435		1312	tCACac/tAAAac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857926	9857927	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0004863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	42	414	0	ENST00000330684.3:c.3474_3475delinsAG	p.Phe1158_Arg1159delinsLeuGly	p.F1158_R1159delinsLG	ENST00000330684	NM_001134407.1	1158	ttCCgc/ttAGgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060501201		P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	726	338	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																														
KDR	3791	MSKCC	GRCh37	4	55973928	55973928	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	214	263	0	ENST00000263923.4:c.1388A>T	p.Glu463Val	p.E463V	ENST00000263923	NM_002253.2	463	gAg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112157613	112157613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	459	325	0	ENST00000257430.4:c.1333C>T	p.Gln445Ter	p.Q445*	ENST00000257430	NM_000038.5	445	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879672	151879672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	123	117	0	ENST00000262189.6:c.5273G>A	p.Arg1758His	p.R1758H	ENST00000262189	NM_170606.2	1758	cGt/cAt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610083	81610083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	71	370	0	ENST00000298171.2:c.1681A>C	p.Ser561Arg	p.S561R	ENST00000298171	NM_000369.2	561	Agt/Cgt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117782	70117782	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	819	475	0	ENST00000245479.2:c.250T>G	p.Tyr84Asp	p.Y84D	ENST00000245479	NM_000346.3	84	Tac/Gac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134251	11134251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218643327		P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	240	363	0	ENST00000344626.4:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000344626	NM_003072.3	973	Cgg/Tgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9560983	9560983	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1424	223	308	0	ENST00000353224.5:c.799A>T	p.Arg267Trp	p.R267W	ENST00000353224	NM_177990.2	267	Agg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29556435	29556452	+	inframe_deletion	In_Frame_Del	DEL	TAACAAATTGAAGAATAC	TAACAAATTGAAGAATAC	-			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	136	214	0	ENST00000358273.4:c.2802_2819del	p.Asn935_Thr940del	p.N935_T940del	ENST00000358273	NM_001042492.2	934	ttTAACAAATTGAAGAATACc/ttc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119889	70119890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0006608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	199	338	0	ENST00000245479.2:c.892_893dup	p.Pro299CysfsTer85	p.P299Cfs*85	ENST00000245479	NM_000346.3	297	-/CT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	512	358	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0007512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	414	349	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0007512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	509	358	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484610	57484610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	337	222	0	ENST00000371085.3:c.694C>T	p.Arg232Cys	p.R232C	ENST00000371085	NM_000516.4	232	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	267	670	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0007866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			61	40	201	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200723	128200723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	298	764	0	ENST00000341105.2:c.1082G>A	p.Arg361His	p.R361H	ENST00000341105	NM_032638.4	361	cGc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735547	40735547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756810336		P-0007866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	404	534	0	ENST00000373198.4:c.3326G>A	p.Arg1109Gln	p.R1109Q	ENST00000373198	NM_133170.3	1109	cGg/cAg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281149	46281149	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	61	411	0	ENST00000371998.3:c.3947-1G>A		p.X1316_splice	ENST00000371998		1316																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43784292	43784292	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0007866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	67	567	1	ENST00000382044.4:c.194A>T	p.Asp65Val	p.D65V	ENST00000382044	NM_001141980.1	65	gAt/gTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609727	117609727	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	37	550	0	ENST00000368508.3:c.6972C>A	p.Cys2324Ter	p.C2324*	ENST00000368508	NM_002944.2	2324	tgC/tgA																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034416	47034416	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0009748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	285	515	0	ENST00000329236.7:c.272-2A>T		p.X91_splice	ENST00000329236	NM_001204466.1	91																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992135	72992135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1589	346	743	0	ENST00000268489.5:c.1910G>A	p.Gly637Glu	p.G637E	ENST00000268489	NM_006885.3	637	gGg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717730	89717731	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0009748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	154	295	0	ENST00000371953.3:c.757_758del	p.Ile253GlnfsTer44	p.I253Qfs*44	ENST00000371953	NM_000314.4	252	gAT/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974745	21974747	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0009748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	144	310	0	ENST00000304494.5:c.80_82del	p.Glu27del	p.E27del	ENST00000304494	NM_000077.4	27	gAGGtg/gtg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974745	21974747	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0009748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	144	310	0	ENST00000304494.5:c.80_82del	p.Glu27del	p.E27del	ENST00000304494	NM_000077.4	27	gAGGtg/gtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0010703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	18	328	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0010703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	12	152	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653805	89653805	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876659443		P-0011416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	47	408	0	ENST00000371953.3:c.103A>G	p.Met35Val	p.M35V	ENST00000371953	NM_000314.4	35	Atg/Gtg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906916	32906919	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs80359277		P-0011416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	31	278	1	ENST00000380152.3:c.1310_1313del	p.Lys437IlefsTer22	p.K437Ifs*22	ENST00000380152		434	aAAAGa/aa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120309	94120309	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	82	893	0	ENST00000369303.4:c.742A>G	p.Met248Val	p.M248V	ENST00000369303	NM_004440.3	248	Atg/Gtg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56400800	56400800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	57	689	0	ENST00000348428.3:c.1394G>C	p.Arg465Thr	p.R465T	ENST00000348428	NM_006785.3	465	aGg/aCg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162307	47162333	+	inframe_deletion	In_Frame_Del	DEL	TTGCTGATACGTGGTAGAAGGCTTTTC	TTGCTGATACGTGGTAGAAGGCTTTTC	-			P-0011416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	33	521	0	ENST00000409792.3:c.3793_3819del	p.Glu1265_Gln1273del	p.E1265_Q1273del	ENST00000409792	NM_014159.6	1265	GAAAAGCCTTCTACCACGTATCAGCAA/-																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0011593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	81	260	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MED12	9968	MSKCC	GRCh37	X	70352766	70352766	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866231134		P-0011593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	128	572	0	ENST00000374080.3:c.4487G>A	p.Arg1496His	p.R1496H	ENST00000374080		1496	cGc/cAc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220528	123220528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	93	538	1	ENST00000218089.9:c.3185G>A	p.Gly1062Glu	p.G1062E	ENST00000218089	NM_001042749.1	1062	gGa/gAa																																																																														
CDH1	999	MSKCC	GRCh37	16	68845624	68845649	+	frameshift_variant	Frame_Shift_Del	DEL	CGATGATGTGAACACCTACAATGCCG	CGATGATGTGAACACCTACAATGCCG	-			P-0011593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	70	309	0	ENST00000261769.5:c.871_896del	p.Asp291HisfsTer11	p.D291Hfs*11	ENST00000261769	NM_004360.3	290	gaCGATGATGTGAACACCTACAATGCCGcc/gacc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341575	89341575	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	32	249	0	ENST00000301030.4:c.7495del	p.Glu2499SerfsTer3	p.E2499Sfs*3	ENST00000301030	NM_001256183.1	2499	Gag/ag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	173	749	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138135	2138135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201206500		P-0012146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			896	147	790	1	ENST00000219476.3:c.5155G>A	p.Ala1719Thr	p.A1719T	ENST00000219476	NM_000548.3	1719	Gca/Aca																																																																														
STAG2	10735	MSKCC	GRCh37	X	123227959	123227959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	143	838	2	ENST00000218089.9:c.3670G>A	p.Glu1224Lys	p.E1224K	ENST00000218089	NM_001042749.1	1224	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68849512	68849512	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	199	810	0	ENST00000261769.5:c.1416del	p.Val473SerfsTer8	p.V473Sfs*8	ENST00000261769	NM_004360.3	472	aCc/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0012707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	27	312	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248157	110248157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	46	477	0	ENST00000374672.4:c.1315C>T	p.Arg439Cys	p.R439C	ENST00000374672	NM_004235.4	439	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	51	586	0	ENST00000269305.4:c.713del	p.Cys238LeufsTer9	p.C238Lfs*9	ENST00000269305	NM_001126112.2	238	tGt/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0013006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	467	835	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913513		P-0013006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	210	522	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
TP63	8626	MSKCC	GRCh37	3	189612187	189612187	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1051829008		P-0013006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	319	639	0	ENST00000264731.3:c.1939C>T	p.Arg647Cys	p.R647C	ENST00000264731	NM_003722.4	647	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781425	3781425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	39	373	0	ENST00000262367.5:c.4940C>A	p.Pro1647His	p.P1647H	ENST00000262367	NM_004380.2	1647	cCc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	215	559	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC	rs121913469		P-0013796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	139	463	3	ENST00000269571.5:c.2263_2264delinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178097256	178097256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	101	430	0	ENST00000397062.3:c.458G>A	p.Ser153Asn	p.S153N	ENST00000397062	NM_006164.4	153	aGc/aAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1271300	1271300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	74	450	0	ENST00000310581.5:c.2402C>A	p.Ala801Asp	p.A801D	ENST00000310581	NM_198253.2	801	gCc/gAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	144	258	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0013878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	309	635	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285087	15285087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763870059		P-0013878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	183	455	1	ENST00000263388.2:c.4528C>T	p.Arg1510Cys	p.R1510C	ENST00000263388	NM_000435.2	1510	Cgc/Tgc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945988	17945988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747131454		P-0013878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	265	735	1	ENST00000458235.1:c.1951C>T	p.Arg651Trp	p.R651W	ENST00000458235	NM_000215.3	651	Cgg/Tgg																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872581	136872581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	552	1257	3	ENST00000241393.3:c.917G>A	p.Gly306Glu	p.G306E	ENST00000241393	NM_003467.2	306	gGa/gAa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30686351	30686351	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	258	382	0	ENST00000359013.4:c.282C>G	p.Ser94Arg	p.S94R	ENST00000359013	NM_001024847.2	94	agC/agG																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910797	29910797	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs41559912		P-0013878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	550	719	0	ENST00000376809.5:c.337G>T	p.Glu113Ter	p.E113*	ENST00000376809	NM_002116.7	113	Gag/Tag																																																																														
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs104894229		P-0014370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	204	561	1	ENST00000311189.7:c.34G>T	p.Gly12Cys	p.G12C	ENST00000311189		12	Ggc/Tgc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061121	38061137	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCTTGGCGCCGCTG	CGCCCTTGGCGCCGCTG	-			P-0014370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	22	127	0	ENST00000250448.2:c.852_868del	p.Ser285ProfsTer2	p.S285Pfs*2	ENST00000250448	NM_004496.3	284	ggCAGCGGCGCCAAGGGCGgc/gggc																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73774932	73774932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	49	490	0	ENST00000254810.4:c.241A>G	p.Thr81Ala	p.T81A	ENST00000254810	NM_005324.3	81	Acc/Gcc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022400	31022400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	17	165	0	ENST00000375687.4:c.1885G>T	p.Gly629Cys	p.G629C	ENST00000375687	NM_015338.5	629	Ggt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541903	187541905	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs1455163228		P-0014370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	43	465	0	ENST00000441802.2:c.5835_5837del	p.Arg1945del	p.R1945del	ENST00000441802	NM_005245.3	1945	agAAGc/agc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227797	53227798	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0014370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	59	621	0	ENST00000375401.3:c.2390_2391del	p.Leu797ArgfsTer3	p.L797Rfs*3	ENST00000375401	NM_004187.3	797	cTA/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	stop_gained	Nonsense_Mutation	SNP	T	T	A	rs1429743956		P-0014640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	299	863	2	ENST00000269305.4:c.625A>T	p.Arg209Ter	p.R209*	ENST00000269305	NM_001126112.2	209	Aga/Tga																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741946	17741946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	46	416	0	ENST00000250003.3:c.617G>T	p.Cys206Phe	p.C206F	ENST00000250003	NM_002478.4	206	tGc/tTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086199	16086199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	236	649	2	ENST00000281043.3:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000281043	NM_005378.4	459	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GTT	rs727504263		P-0014640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	288	576	0	ENST00000275493.2:c.2308_2309insGTT	p.Asp770delinsGlyTyr	p.D770delinsGY	ENST00000275493	NM_005228.3	770	gac/gGTTac																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577563	64577563	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	133	364	31	ENST00000337652.1:c.19C>T	p.Gln7Ter	p.Q7*	ENST00000337652	NM_130803.2	7	Cag/Tag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158150	47158202	+	frameshift_variant	Frame_Shift_Del	DEL	CACATGCTATTTCACCTTGAGCTCTTTCATCTTTAGAAAGAGGTGTACACTCA	CACATGCTATTTCACCTTGAGCTCTTTCATCTTTAGAAAGAGGTGTACACTCA	-			P-0015330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	89	678	0	ENST00000409792.3:c.4497_4549del	p.Cys1499TrpfsTer6	p.C1499Wfs*6	ENST00000409792	NM_014159.6	1499	tgTGAGTGTACACCTCTTTCTAAAGATGAAAGAGCTCAAGGTGAAATAGCATGTGgg/tggg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287330	33287330	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	140	592	0	ENST00000374542.5:c.1767del	p.Arg590GlyfsTer12	p.R590Gfs*12	ENST00000374542	NM_001141970.1	589	tcC/tc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0016929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	138	434	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115720	8115720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	178	473	0	ENST00000346208.3:c.1066A>G	p.Met356Val	p.M356V	ENST00000346208		356	Atg/Gtg																																																																														
CBFB	865	MSKCC	GRCh37	16	67100669	67100669	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	168	465	0	ENST00000412916.2:c.367G>C	p.Gly123Arg	p.G123R	ENST00000412916		123	Ggc/Cgc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652067	36652067	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016989-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			743	313	876	0	ENST00000244741.5:c.189del	p.Phe63LeufsTer85	p.F63Lfs*85	ENST00000244741	NM_000389.4	63	ttC/tt																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790828	89790829	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0016989-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			555	252	741	0	ENST00000336032.3:c.216_217del	p.Ala74SerfsTer133	p.A74Sfs*133	ENST00000336032	NM_006813.2	72	cCT/c																																																																														
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016989-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			685	65	714	1	ENST00000261769.5:c.1828C>A	p.Gln610Lys	p.Q610K	ENST00000261769	NM_004360.3	610	Cag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295186	1295187	+	upstream_gene_variant	5'Flank	INS	-	-	GGGGCCGCGGAAAGGAAGGGGA			P-0016989-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	32	145	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36651968	36651972	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCC	GAGCC	-			P-0016989-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	302	744	0	ENST00000244741.5:c.91_95del	p.Ser31ArgfsTer3	p.S31Rfs*3	ENST00000244741	NM_000389.4	30	ctGAGCCgc/ctgc																																																																														
B2M	567	MSKCC	GRCh37	15	45007411	45007799	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGAGGGAAAGATACCAAGTCACGGTTTATTCTTCAAAATGGAGGTGGCTTGTTGGGAAGGTGGAAGCTCATTTGGCCAGAGTGGAAATGGAATTGGGAGAAATCGATGACCAAATGTAAACACTTGGTGCCTGATATAGCTTGACACCAAGTTAGCCCCAAGTGAAATACCCTGGCAATATTAATGTGTCTTTTCCCGATATTCCTCAGGTACTCCAAAGATTCAGGTTTACTCACGTCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTC	ATGAGGGAAAGATACCAAGTCACGGTTTATTCTTCAAAATGGAGGTGGCTTGTTGGGAAGGTGGAAGCTCATTTGGCCAGAGTGGAAATGGAATTGGGAGAAATCGATGACCAAATGTAAACACTTGGTGCCTGATATAGCTTGACACCAAGTTAGCCCCAAGTGAAATACCCTGGCAATATTAATGTGTCTTTTCCCGATATTCCTCAGGTACTCCAAAGATTCAGGTTTACTCACGTCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTC	-			P-0017382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	102	13	0	ENST00000558401.1:c.68-210_246del		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18280016	18280016	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778763290		P-0017382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	163	483	1	ENST00000222254.8:c.2099C>T	p.Ser700Leu	p.S700L	ENST00000222254	NM_005027.3	700	tCg/tTg																																																																														
NPM1	4869	MSKCC	GRCh37	5	170815004	170815004	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	97	302	0	ENST00000296930.5:c.52C>G	p.Leu18Val	p.L18V	ENST00000296930	NM_002520.6	18	Ctt/Gtt																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805594	32805594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	56	966	0	ENST00000374899.4:c.417G>A	p.Trp139Ter	p.W139*	ENST00000374899	NM_018833.2	139	tgG/tgA																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	190	508	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273012	55273012	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs755330584		P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	265	605	0	ENST00000275493.2:c.3335A>G	p.Asn1112Ser	p.N1112S	ENST00000275493	NM_005228.3	1112	aAt/aGt																																																																														
B2M	567	MSKCC	GRCh37	15	45003766	45003767	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	142	379	0	ENST00000558401.1:c.22_23delinsAA	p.Ala8Asn	p.A8N	ENST00000558401	NM_004048.2	8	GCt/AAt																																																																														
CBFB	865	MSKCC	GRCh37	16	67100619	67100619	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	277	515	0	ENST00000412916.2:c.317T>G	p.Val106Gly	p.V106G	ENST00000412916		106	gTc/gGc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47679332	47679339	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCCTC	GCATCCTC	-			P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	363	466	1	ENST00000347630.2:c.868_875del	p.Glu290ProfsTer4	p.E290Pfs*4	ENST00000347630	NM_001007230.1	290	GAGGATGCc/c																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161210	56161210	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	546	558	0	ENST00000399503.3:c.1079T>G	p.Phe360Cys	p.F360C	ENST00000399503	NM_005921.1	360	tTt/tGt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181813	56181815	+	inframe_deletion	In_Frame_Del	DEL	TTA	TTA	-			P-0017699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	234	511	0	ENST00000399503.3:c.4040_4042del	p.Ile1347del	p.I1347del	ENST00000399503	NM_005921.1	1346	gTTAtt/gtt																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	47	196	1	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	188	411	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39550419	39550419	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0018105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	84	225	0	ENST00000262039.4:c.530A>G	p.Lys177Arg	p.K177R	ENST00000262039	NM_002647.2	177	aAg/aGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	81	294	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1414	236	1060	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40911144	40911144	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776134993		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	101	605	0	ENST00000373198.4:c.2161C>T	p.Arg721Cys	p.R721C	ENST00000373198	NM_133170.3	721	Cgt/Tgt																																																																														
TP63	8626	MSKCC	GRCh37	3	189612205	189612205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	123	574	0	ENST00000264731.3:c.1957C>T	p.Pro653Ser	p.P653S	ENST00000264731	NM_003722.4	653	Cca/Tca																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982072	93982072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1334631229		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	97	577	0	ENST00000369303.4:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000369303	NM_004440.3	465	Gaa/Aaa																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813334	102813334	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1430553116		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	47	492	0	ENST00000307046.8:c.355C>T	p.Arg119Cys	p.R119C	ENST00000307046	NM_001111285.1	119	Cgc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306568	41306568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	123	662	0	ENST00000373198.4:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000373198	NM_133170.3	364	cGa/cAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156501	55156501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	43	511	1	ENST00000257290.5:c.2902G>A	p.Asp968Asn	p.D968N	ENST00000257290	NM_006206.4	968	Gac/Aac																																																																														
CCND2	894	MSKCC	GRCh37	12	4383301	4383301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	148	665	1	ENST00000261254.3:c.95C>T	p.Thr32Ile	p.T32I	ENST00000261254	NM_001759.3	32	aCc/aTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25459872	25459872	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs750597155		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1264	88	808	2	ENST00000264709.3:c.2411C>T	p.Pro804Leu	p.P804L	ENST00000264709	NM_175629.2	804	cCg/cTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259197	89259197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	81	409	0	ENST00000336596.2:c.341G>A	p.Gly114Glu	p.G114E	ENST00000336596	NM_005233.5	114	gGa/gAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056973	180056973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1272	172	876	0	ENST00000261937.6:c.646C>T	p.Leu216Phe	p.L216F	ENST00000261937	NM_182925.4	216	Ctt/Ttt																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997434	149997434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	191	967	1	ENST00000253339.5:c.2845C>T	p.Pro949Ser	p.P949S	ENST00000253339		949	Cct/Tct																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552696	18552696	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1023238256		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	84	739	2	ENST00000266497.5:c.2107G>A	p.Glu703Lys	p.E703K	ENST00000266497		703	Gaa/Aaa																																																																														
CBL	867	MSKCC	GRCh37	11	119149242	119149242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779039234		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	220	620	0	ENST00000264033.4:c.1250C>T	p.Pro417Leu	p.P417L	ENST00000264033	NM_005188.3	417	cCt/cTt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476403	88476403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	41	499	0	ENST00000360948.2:c.1729C>T	p.Pro577Ser	p.P577S	ENST00000360948	NM_001012338.2	577	Ccc/Tcc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074244	8074244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	168	618	0	ENST00000377482.5:c.415C>T	p.Leu139Phe	p.L139F	ENST00000377482	NM_018948.3	139	Ctt/Ttt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941241	36941241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	123	672	0	ENST00000361632.4:c.98C>T	p.Ala33Val	p.A33V	ENST00000361632		33	gCc/gTc																																																																														
MPL	4352	MSKCC	GRCh37	1	43805789	43805789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1307494831		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	213	626	0	ENST00000372470.3:c.845G>A	p.Gly282Glu	p.G282E	ENST00000372470	NM_005373.2	282	gGa/gAa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273015	115273015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	131	757	0	ENST00000438362.2:c.1358C>T	p.Ala453Val	p.A453V	ENST00000438362	NM_001242891.1	453	gCt/gTt																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498710	246498710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	132	665	0	ENST00000388985.4:c.295C>T	p.Pro99Ser	p.P99S	ENST00000388985		99	Cca/Tca																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258061	123258061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1358630379		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	132	816	1	ENST00000358487.5:c.1620G>A	p.Met540Ile	p.M540I	ENST00000358487	NM_000141.4	540	atG/atA																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948727	71948727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	147	639	0	ENST00000298229.2:c.3439C>T	p.Pro1147Ser	p.P1147S	ENST00000298229	NM_001567.3	1147	Cca/Tca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18576924	18576924	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	124	778	0	ENST00000266497.5:c.2332C>G	p.Leu778Val	p.L778V	ENST00000266497		778	Cta/Gta																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120810	115120810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1469975580		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	71	311	0	ENST00000257566.3:c.196G>A	p.Asp66Asn	p.D66N	ENST00000257566	NM_016569.3	66	Gat/Aat																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431499	121431499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	53	608	0	ENST00000257555.6:c.703G>A	p.Glu235Lys	p.E235K	ENST00000257555		235	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133257848	133257848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	135	545	0	ENST00000320574.5:c.80C>T	p.Ser27Phe	p.S27F	ENST00000320574	NM_006231.2	27	tCc/tTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912304	32912304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	52	517	0	ENST00000380152.3:c.3812C>T	p.Ser1271Leu	p.S1271L	ENST00000380152		1271	tCa/tTa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708450	43708450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	61	678	2	ENST00000382044.4:c.4846C>T	p.Leu1616Phe	p.L1616F	ENST00000382044	NM_001141980.1	1616	Ctt/Ttt																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096136	2096136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	78	629	0	ENST00000219066.1:c.371C>T	p.Pro124Leu	p.P124L	ENST00000219066	NM_002528.5	124	cCc/cTc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2215914	2215914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1463	80	849	0	ENST00000326181.6:c.116C>T	p.Ser39Leu	p.S39L	ENST00000326181	NM_032271.2	39	tCa/tTa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89816292	89816292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	70	442	0	ENST00000389301.3:c.3085G>A	p.Glu1029Lys	p.E1029K	ENST00000389301	NM_000135.2	1029	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	227	995	1	ENST00000269305.4:c.376-1G>C		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110201	8110201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	180	708	1	ENST00000585124.1:c.404C>T	p.Pro135Leu	p.P135L	ENST00000585124	NM_004217.3	135	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29559858	29559858	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	97	352	0	ENST00000358273.4:c.3455T>G	p.Leu1152Ter	p.L1152*	ENST00000358273	NM_001042492.2	1152	tTa/tGa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40476791	40476791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	91	728	1	ENST00000264657.5:c.1538C>T	p.Ser513Phe	p.S513F	ENST00000264657	NM_139276.2	513	tCc/tTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7125476	7125476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1311	103	837	0	ENST00000302850.5:c.3076C>T	p.Leu1026Phe	p.L1026F	ENST00000302850	NM_000208.2	1026	Ctt/Ttt																																																																														
INSR	3643	MSKCC	GRCh37	19	7267900	7267901	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	62	368	3	ENST00000302850.5:c.107_108delinsTT	p.Pro36Leu	p.P36L	ENST00000302850	NM_000208.2	36	cCC/cTT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272128	15272128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1408330704		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	164	554	1	ENST00000263388.2:c.6311C>T	p.Ser2104Leu	p.S2104L	ENST00000263388	NM_000435.2	2104	tCg/tTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223145	36223145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1559	186	1049	3	ENST00000222270.7:c.5695C>T	p.Pro1899Ser	p.P1899S	ENST00000222270	NM_014727.1	1899	Ccc/Tcc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605111	46605111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748180336		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	135	743	1	ENST00000263734.3:c.1328G>A	p.Arg443Lys	p.R443K	ENST00000263734	NM_001430.4	443	aGg/aAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285261	212285261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	63	650	0	ENST00000342788.4:c.3040G>A	p.Glu1014Lys	p.E1014K	ENST00000342788	NM_005235.2	1014	Gaa/Aaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546830	9546830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781148117		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	74	281	0	ENST00000353224.5:c.1192G>A	p.Ala398Thr	p.A398T	ENST00000353224	NM_177990.2	398	Gct/Act																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265061	46265061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1229549236		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	125	567	1	ENST00000371998.3:c.1931C>T	p.Ser644Leu	p.S644L	ENST00000371998		644	tCa/tTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41545963	41545963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1493	200	991	0	ENST00000263253.7:c.2578C>T	p.Pro860Ser	p.P860S	ENST00000263253	NM_001429.3	860	Cca/Tca																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940066	49940066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	80	663	0	ENST00000296474.3:c.977C>T	p.Ser326Phe	p.S326F	ENST00000296474	NM_002447.2	326	tCc/tTc																																																																														
ATR	545	MSKCC	GRCh37	3	142266689	142266689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	72	708	0	ENST00000350721.4:c.3235T>A	p.Leu1079Ile	p.L1079I	ENST00000350721	NM_001184.3	1079	Tta/Ata																																																																														
TP63	8626	MSKCC	GRCh37	3	189586493	189586493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	47	473	0	ENST00000264731.3:c.1117G>A	p.Gly373Ser	p.G373S	ENST00000264731	NM_003722.4	373	Ggt/Agt																																																																														
KDR	3791	MSKCC	GRCh37	4	55953820	55953820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	61	729	2	ENST00000263923.4:c.3616G>A	p.Glu1206Lys	p.E1206K	ENST00000263923	NM_002253.2	1206	Gaa/Aaa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31401603	31401603	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	156	717	0	ENST00000344624.3:c.4061A>C	p.Glu1354Ala	p.E1354A	ENST00000344624		1354	gAa/gCa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31511284	31511284	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1273	145	770	0	ENST00000344624.3:c.1291-1G>A		p.X431_splice	ENST00000344624		431																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923703	131923704	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	106	714	1	ENST00000265335.6:c.973_974delinsAT	p.Cys325Ile	p.C325I	ENST00000265335		325	TGt/ATt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517544	176517544	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1261	169	769	1	ENST00000292408.4:c.245G>A	p.Trp82Ter	p.W82*	ENST00000292408	NM_213647.1	82	tGg/tAg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322430	31322430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs956809791		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	51	506	0	ENST00000412585.2:c.1025G>A	p.Gly342Glu	p.G342E	ENST00000412585	NM_005514.6	342	gGg/gAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117679148	117679148	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1459800881		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	125	595	0	ENST00000368508.3:c.3673G>A	p.Asp1225Asn	p.D1225N	ENST00000368508	NM_002944.2	1225	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709105	117709105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	130	599	0	ENST00000368508.3:c.1852G>A	p.Asp618Asn	p.D618N	ENST00000368508	NM_002944.2	618	Gac/Aac																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265554	152265554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	119	579	0	ENST00000206249.3:c.1007C>T	p.Pro336Leu	p.P336L	ENST00000206249	NM_000125.3	336	cCc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140549963	140549963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	68	649	0	ENST00000288602.6:c.188C>T	p.Ala63Val	p.A63V	ENST00000288602	NM_004333.4	63	gCc/gTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879010	151879010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	73	519	0	ENST00000262189.6:c.5935C>T	p.Pro1979Ser	p.P1979S	ENST00000262189	NM_170606.2	1979	Ccc/Tcc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68981348	68981348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	105	577	0	ENST00000288368.4:c.1420G>A	p.Glu474Lys	p.E474K	ENST00000288368	NM_024870.2	474	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486156	8486156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	86	498	0	ENST00000356435.5:c.2661G>T	p.Lys887Asn	p.K887N	ENST00000356435		887	aaG/aaT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974720	21974721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs398123152		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	74	360	1	ENST00000304494.5:c.106dup	p.Ala36GlyfsTer8	p.A36Gfs*8	ENST00000304494	NM_000077.4	36	gcg/gGcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974720	21974721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs398123152		P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	74	360	1	ENST00000304494.5:c.106dup	p.Ala36GlyfsTer8	p.A36Gfs*8	ENST00000304494	NM_000077.4	36	gcg/gGcg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220435	98220435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	66	679	0	ENST00000331920.6:c.3028C>T	p.Pro1010Ser	p.P1010S	ENST00000331920	NM_000264.3	1010	Ccc/Tcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	175	538	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118704	115118706	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0019579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	249	580	2	ENST00000257566.3:c.635_637del	p.Asn212del	p.N212del	ENST00000257566	NM_016569.3	212	aACAtt/att																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498775	246498775	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0019579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	196	543	0	ENST00000388985.4:c.230A>G	p.Lys77Arg	p.K77R	ENST00000388985		77	aAa/aGa																																																																														
RET	5979	MSKCC	GRCh37	10	43614987	43614987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1364361946		P-0019579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	77	620	0	ENST00000355710.3:c.2401C>T	p.Leu801Phe	p.L801F	ENST00000355710	NM_020975.4	801	Ctc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579417	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	GGAG	GGAG	-			P-0019579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	302	820	2	ENST00000269305.4:c.267_270del	p.Ser90GlyfsTer32	p.S90Gfs*32	ENST00000269305	NM_001126112.2	89	ccCTCC/cc																																																																														
HGF	3082	MSKCC	GRCh37	7	81374327	81374327	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	94	382	0	ENST00000222390.5:c.735C>G	p.Phe245Leu	p.F245L	ENST00000222390	NM_000601.4	245	ttC/ttG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	85	787	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	103	802	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	44	663	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11307913	11307913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149611181		P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	136	738	1	ENST00000361445.4:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000361445	NM_004958.3	360	cGg/cAg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572651	64572651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	141	811	1	ENST00000337652.1:c.1220C>A	p.Ser407Tyr	p.S407Y	ENST00000337652	NM_130803.2	407	tCc/tAc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56367665	56367673	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCACAGA	TTTCACAGA	-			P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	56	305	0	ENST00000348428.3:c.499-6_501del		p.X167_splice	ENST00000348428	NM_006785.3	167																																																																															
RBM10	8241	MSKCC	GRCh37	X	47030641	47030646	+	intron_variant	Intron	INS	CAGCCA	CAGCCA	ATCCTGCTGAGGATGCAGCATGCTGAGGATGCTG			P-0022951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	109	438	0	ENST00000329236.7:c.201+1744_201+1749delinsATCCTGCTGAGGATGCAGCATGCTGAGGATGCTG		p.*67*	ENST00000329236	NM_001204466.1																																																																																
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0023908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	155	510	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0025356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	137	735	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	120	696	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	90	387	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0025802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			156	360	642	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643380	38643380	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	134	398	0	ENST00000299084.4:c.850A>G	p.Lys284Glu	p.K284E	ENST00000299084	NM_152594.2	284	Aaa/Gaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492899	56492899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1409912837		P-0025802-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	66	214	0	ENST00000407977.2:c.40C>T	p.Pro14Ser	p.P14S	ENST00000407977		14	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577564	7577564	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057522275		P-0026371-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	301	548	0	ENST00000269305.4:c.717C>G	p.Asn239Lys	p.N239K	ENST00000269305	NM_001126112.2	239	aaC/aaG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577572	7577572	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026371-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	317	541	0	ENST00000269305.4:c.709A>C	p.Met237Leu	p.M237L	ENST00000269305	NM_001126112.2	237	Atg/Ctg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242482	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCAAC	GAATTAAGAGAAGCAAC	AT	rs727504402		P-0026371-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	242	368	1	ENST00000275493.2:c.2236_2252delinsAT	p.Glu746_Thr751delinsIle	p.E746_T751delinsI	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCAACa/ATa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822439	72822439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026371-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			868	55	793	0	ENST00000268489.5:c.9736G>A	p.Ala3246Thr	p.A3246T	ENST00000268489	NM_006885.3	3246	Gca/Aca																																																																														
BARD1	580	MSKCC	GRCh37	2	215593689	215593689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026371-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	113	377	0	ENST00000260947.4:c.2045C>T	p.Thr682Ile	p.T682I	ENST00000260947	NM_000465.2	682	aCc/aTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	225	331	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	148	593	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	126	443	7	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72891538	72891538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs529764235		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	172	340	0	ENST00000325599.8:c.224G>A	p.Arg75His	p.R75H	ENST00000325599	NM_018130.2	75	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	73	225	2	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	94	341	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	136	451	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	189	565	1	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	163	386	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	167	502	1	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980034	7980034	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369807670		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	241	678	1	ENST00000319144.4:c.1303G>A	p.Val435Ile	p.V435I	ENST00000319144	NM_001139.2	435	Gtc/Atc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662458	227662458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	136	472	2	ENST00000305123.5:c.997G>A	p.Glu333Lys	p.E333K	ENST00000305123	NM_005544.2	333	Gaa/Aaa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274217	5274217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	178	484	0	ENST00000357368.4:c.230G>A	p.Arg77His	p.R77H	ENST00000357368	NM_002850.3	77	cGc/cAc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222191	2222191	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs778747333		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	190	675	0	ENST00000398665.3:c.3023C>G	p.Ser1008Cys	p.S1008C	ENST00000398665	NM_032482.2	1008	tCc/tGc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	396	581	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	199	476	1	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	199	650	3	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	196	715	1	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
B2M	567	MSKCC	GRCh37	15	45007806	45007807	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	133	473	0	ENST00000558401.1:c.253_254del	p.Leu85ValfsTer4	p.L85Vfs*4	ENST00000558401	NM_004048.2	85	TTg/g																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739024	145739024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371818842		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	216	551	0	ENST00000428558.2:c.2131G>A	p.Glu711Lys	p.E711K	ENST00000428558	NM_004260.3	711	Gag/Aag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060955	38060955	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	94	332	0	ENST00000250448.2:c.1034del	p.Gly345AlafsTer5	p.G345Afs*5	ENST00000250448	NM_004496.3	345	gGc/gc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131940522	131940522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375315737		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	133	362	0	ENST00000265335.6:c.2549G>A	p.Arg850His	p.R850H	ENST00000265335		850	cGt/cAt																																																																														
AKT2	208	MSKCC	GRCh37	19	40743886	40743886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434593		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	152	510	3	ENST00000392038.2:c.821G>A	p.Arg274His	p.R274H	ENST00000392038	NM_001626.4	274	cGc/cAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857379	9857380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	130	404	0	ENST00000330684.3:c.4021dup	p.Ser1341LysfsTer25	p.S1341Kfs*25	ENST00000330684	NM_001134407.1	1341	agc/aAgc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86668002	86668002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769775990		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	94	334	0	ENST00000274376.6:c.1766G>A	p.Arg589His	p.R589H	ENST00000274376	NM_002890.2	589	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259381	16259381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	118	356	0	ENST00000375759.3:c.6646G>A	p.Ala2216Thr	p.A2216T	ENST00000375759	NM_015001.2	2216	Gct/Act																																																																														
ID3	3399	MSKCC	GRCh37	1	23885632	23885632	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	142	414	1	ENST00000374561.5:c.286del	p.His96ThrfsTer30	p.H96Tfs*30	ENST00000374561	NM_002167.4	96	Cac/ac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120483203	120483204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	151	398	1	ENST00000256646.2:c.3157dup	p.Leu1053ProfsTer21	p.L1053Pfs*21	ENST00000256646	NM_024408.3	1053	ctg/cCtg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444018	49444018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	178	559	0	ENST00000301067.7:c.3353T>C	p.Leu1118Pro	p.L1118P	ENST00000301067	NM_003482.3	1118	cTa/cCa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864847	57864847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	176	607	0	ENST00000228682.2:c.2324C>A	p.Pro775His	p.P775H	ENST00000228682	NM_005269.2	775	cCc/cAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865628	57865628	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	250	735	0	ENST00000228682.2:c.3109del	p.Leu1037TrpfsTer23	p.L1037Wfs*23	ENST00000228682	NM_005269.2	1035	aaC/aa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504578	103504578	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	124	382	0	ENST00000355739.4:c.204del	p.Arg69GlufsTer15	p.R69Efs*15	ENST00000355739	NM_000123.3	67	Ttt/tt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138478	2138478	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138831802		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	269	673	1	ENST00000219476.3:c.5291G>A	p.Ser1764Asn	p.S1764N	ENST00000219476	NM_000548.3	1764	aGc/aAc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868140	56868140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	154	500	1	ENST00000308159.5:c.1638G>T	p.Glu546Asp	p.E546D	ENST00000308159	NM_014669.4	546	gaG/gaT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245725	41245725	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs397508911		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	161	590	2	ENST00000357654.3:c.1823del	p.Lys608ArgfsTer4	p.K608Rfs*4	ENST00000357654	NM_007294.3	608	aAg/ag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63545653	63545653	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	163	470	0	ENST00000307078.5:c.941T>C	p.Met314Thr	p.M314T	ENST00000307078	NM_004655.3	314	aTg/aCg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56367746	56367746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	169	420	1	ENST00000348428.3:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000348428	NM_006785.3	191	cGa/cAa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56376709	56376709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	82	469	0	ENST00000348428.3:c.749C>T	p.Ala250Val	p.A250V	ENST00000348428	NM_006785.3	250	gCt/gTt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298137	15298137	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200317373		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	233	571	0	ENST00000263388.2:c.1619C>T	p.Thr540Met	p.T540M	ENST00000263388	NM_000435.2	540	aCg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219922	36219922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	192	607	0	ENST00000222270.7:c.4724T>C	p.Leu1575Pro	p.L1575P	ENST00000222270	NM_014727.1	1575	cTg/cCg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25471122	25471122	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	176	435	0	ENST00000264709.3:c.640-1G>T		p.X214_splice	ENST00000264709	NM_175629.2	214																																																																															
CASP8	841	MSKCC	GRCh37	2	202149670	202149670	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	122	507	0	ENST00000358485.4:c.1111T>G	p.Cys371Gly	p.C371G	ENST00000358485	NM_001080125.1	371	Tgc/Ggc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225365203	225365203	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	110	274	0	ENST00000264414.4:c.1487T>C	p.Val496Ala	p.V496A	ENST00000264414	NM_003590.4	496	gTa/gCa																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793314	242793314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	242	631	0	ENST00000334409.5:c.763A>G	p.Ser255Gly	p.S255G	ENST00000334409	NM_005018.2	255	Agc/Ggc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022502	31022502	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs775538653		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	66	299	0	ENST00000375687.4:c.1987A>G	p.Ser663Gly	p.S663G	ENST00000375687	NM_015338.5	663	Agc/Ggc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710625	40710625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	181	546	0	ENST00000373198.4:c.4226C>T	p.Ala1409Val	p.A1409V	ENST00000373198	NM_133170.3	1409	gCc/gTc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206863	36206863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	129	402	0	ENST00000300305.3:c.649G>T	p.Gly217Trp	p.G217W	ENST00000300305		217	Ggg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41513409	41513409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	172	537	4	ENST00000263253.7:c.313G>A	p.Ala105Thr	p.A105T	ENST00000263253	NM_001429.3	105	Gcc/Acc																																																																														
EP300	2033	MSKCC	GRCh37	22	41523641	41523641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	233	638	3	ENST00000263253.7:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000263253	NM_001429.3	353	Cgc/Tgc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332739	153332739	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	143	468	0	ENST00000281708.4:c.217del	p.Gln73SerfsTer15	p.Q73Sfs*15	ENST00000281708	NM_033632.3	73	Cag/ag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540104	187540105	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	121	346	0	ENST00000441802.2:c.7635_7636del	p.Gly2546ThrfsTer9	p.G2546Tfs*9	ENST00000441802	NM_005245.3	2545	agAGga/agga																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520223	176520223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	179	598	0	ENST00000292408.4:c.1142C>A	p.Ala381Asp	p.A381D	ENST00000292408	NM_213647.1	381	gCt/gAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706902	117706902	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	142	466	0	ENST00000368508.3:c.2248del	p.Ala750LeufsTer2	p.A750Lfs*2	ENST00000368508	NM_002944.2	750	Gct/ct																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450321	50450321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	168	541	0	ENST00000331340.3:c.505G>A	p.Gly169Arg	p.G169R	ENST00000331340	NM_006060.4	169	Ggg/Agg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221814	55221815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	252	715	0	ENST00000275493.2:c.861dup	p.Gly288TrpfsTer11	p.G288Wfs*11	ENST00000275493	NM_005228.3	286	-/T																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540214	23540219	+	inframe_deletion	In_Frame_Del	DEL	CTCTGG	CTCTGG	-			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	33	328	1	ENST00000380871.4:c.184_189del	p.Pro62_Glu63del	p.P62_E63del	ENST00000380871	NM_006167.3	62	CCAGAG/-																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87563503	87563503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	180	648	0	ENST00000277120.3:c.1891A>G	p.Met631Val	p.M631V	ENST00000277120		631	Atg/Gtg																																																																														
ABL1	25	MSKCC	GRCh37	9	133755916	133755916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766145624		P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	183	538	1	ENST00000318560.5:c.1543G>A	p.Val515Ile	p.V515I	ENST00000318560	NM_005157.4	515	Gtc/Atc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390589	139390589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	252	740	1	ENST00000277541.6:c.7602G>T	p.Glu2534Asp	p.E2534D	ENST00000277541	NM_017617.3	2534	gaG/gaT																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929475	44929475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	196	275	0	ENST00000377967.4:c.2575A>G	p.Met859Val	p.M859V	ENST00000377967	NM_021140.2	859	Atg/Gtg																																																																														
MED12	9968	MSKCC	GRCh37	X	70338703	70338703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	127	274	0	ENST00000374080.3:c.99G>T	p.Glu33Asp	p.E33D	ENST00000374080		33	gaG/gaT																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56490609	56490610	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	53	472	2	ENST00000267101.3:c.2253_2254delinsAT	p.Ser752Cys	p.S752C	ENST00000267101	NM_001982.3	751	caGAgt/caATgt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434713	110434713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	55	624	0	ENST00000375856.3:c.3688G>A	p.Gly1230Ser	p.G1230S	ENST00000375856	NM_003749.2	1230	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577092	7577093	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGGTCTCTCCCAGGACAGGCACAAACA			P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	207	705	0	ENST00000269305.4:c.819_845dup	p.Val274_Arg282dup	p.V274_R282dup	ENST00000269305	NM_001126112.2	274	cgg/cgTGTTTGTGCCTGTCCTGGGAGAGACCGg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	158	337	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	29940510	29940510	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	208	577	0	ENST00000389048.3:c.721T>A	p.Phe241Ile	p.F241I	ENST00000389048	NM_004304.4	241	Ttt/Att																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275138	41275138	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	85	330	0	ENST00000349496.5:c.1304A>C	p.Lys435Thr	p.K435T	ENST00000349496	NM_001904.3	435	aAg/aCg																																																																														
MITF	4286	MSKCC	GRCh37	3	70008521	70008521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876657699		P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	52	507	0	ENST00000352241.4:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000352241	NM_198159.2	371	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259362	89259362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	142	512	0	ENST00000336596.2:c.506G>A	p.Arg169Lys	p.R169K	ENST00000336596	NM_005233.5	169	aGa/aAa																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0028074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	163	466	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	594	382	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040962	47040962	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782623757		P-0029765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	413	684	1	ENST00000329236.7:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000329236	NM_001204466.1	420	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577578	7577578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	315	499	0	ENST00000269305.4:c.703A>G	p.Asn235Asp	p.N235D	ENST00000269305	NM_001126112.2	235	Aac/Gac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976790	2976790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	369	663	0	ENST00000396946.4:c.1222C>A	p.Arg408Ser	p.R408S	ENST00000396946	NM_032415.4	408	Cgc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434415	49434415	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	527	611	0	ENST00000301067.7:c.7138C>T	p.Gln2380Ter	p.Q2380*	ENST00000301067	NM_003482.3	2380	Cag/Tag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964187	28964187	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1206561200		P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	187	350	0	ENST00000282397.4:c.1715A>T	p.Asp572Val	p.D572V	ENST00000282397	NM_002019.4	572	gAc/gTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436772	110436772	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767955504		P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1374	120	714	1	ENST00000375856.3:c.1629G>A	p.Met543Ile	p.M543I	ENST00000375856	NM_003749.2	543	atG/atA																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437486	110437486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	95	520	0	ENST00000375856.3:c.915G>T	p.Lys305Asn	p.K305N	ENST00000375856	NM_003749.2	305	aaG/aaT																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437970	110437970	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs994486330		P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	16	126	0	ENST00000375856.3:c.431G>C	p.Ser144Thr	p.S144T	ENST00000375856	NM_003749.2	144	aGc/aCc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724651	43724651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	190	626	1	ENST00000382044.4:c.3416C>T	p.Thr1139Ile	p.T1139I	ENST00000382044	NM_001141980.1	1139	aCt/aTt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99491831	99491831	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772355972		P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	97	390	0	ENST00000268035.6:c.3616G>A	p.Ala1206Thr	p.A1206T	ENST00000268035	NM_000875.3	1206	Gcc/Acc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81902877	81902877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	368	441	0	ENST00000359376.3:c.538G>A	p.Ala180Thr	p.A180T	ENST00000359376	NM_002661.3	180	Gcc/Acc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223256	41223256	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	66	380	0	ENST00000357654.3:c.4676-1G>C		p.X1559_splice	ENST00000357654	NM_007294.3	1559																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808007	1808007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	286	760	1	ENST00000260795.2:c.1983G>T	p.Met661Ile	p.M661I	ENST00000260795		661	atG/atT																																																																														
SDHA	6389	MSKCC	GRCh37	5	226149	226149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	472	713	1	ENST00000264932.6:c.608C>A	p.Thr203Asn	p.T203N	ENST00000264932	NM_004168.2	203	aCc/aAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021741	69021741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	256	454	0	ENST00000288368.4:c.3029G>T	p.Gly1010Val	p.G1010V	ENST00000288368	NM_024870.2	1010	gGt/gTt																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39325082	39325082	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0031769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	277	404	0	ENST00000373001.3:c.237G>C	p.Lys79Asn	p.K79N	ENST00000373001	NM_022157.3	79	aaG/aaC																																																																														
MYC	4609	MSKCC	GRCh37	8	128750998	128750998	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1439970381		P-0031769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	199	349	0	ENST00000377970.2:c.535C>T	p.Pro179Ser	p.P179S	ENST00000377970	NM_002467.4	179	Ccc/Tcc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0031813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	551	564	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0031813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	151	553	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431634	6431634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	228	530	0	ENST00000356142.4:c.187G>C	p.Asp63His	p.D63H	ENST00000356142	NM_018890.3	63	Gat/Cat																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	231	534	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0031813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	157	479	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	150	586	0	ENST00000361445.4:c.5930C>T	p.Thr1977Ile	p.T1977I	ENST00000361445	NM_004958.3	1977	aCa/aTa																																																																														
PARP1	142	MSKCC	GRCh37	1	226549228	226549228	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	144	452	0	ENST00000366794.5:c.2978A>G	p.Asp993Gly	p.D993G	ENST00000366794	NM_001618.3	993	gAt/gGt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807504	1807504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1048418015		P-0031813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	184	827	3	ENST00000260795.2:c.1673C>T	p.Ala558Val	p.A558V	ENST00000260795		558	gCg/gTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413913	139413913	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	152	839	0	ENST00000277541.6:c.847T>C	p.Cys283Arg	p.C283R	ENST00000277541	NM_017617.3	283	Tgc/Cgc																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480522	123480522	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	252	595	0	ENST00000371139.4:c.30A>C	p.Lys10Asn	p.K10N	ENST00000371139	NM_001114937.2	10	aaA/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	37	461	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0032341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	34	644	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	25	649	1	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	79	316	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0032833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	78	335	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0033031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	16	150	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0033031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	16	150	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057520000		P-0033031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	114	725	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491475	18491475	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	48	267	0	ENST00000266497.5:c.1388A>T	p.Lys463Ile	p.K463I	ENST00000266497		463	aAa/aTa																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735489	204735489	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	51	359	0	ENST00000302823.3:c.290T>G	p.Phe97Cys	p.F97C	ENST00000302823	NM_005214.4	97	tTc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0033066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	326	645	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751886972		P-0033066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	159	632	1	ENST00000373198.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000373198	NM_133170.3	413	gCg/gTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508424	106508424	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751449393		P-0033066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	85	224	0	ENST00000359195.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000359195	NM_002649.2	140	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244233	5244233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	115	565	1	ENST00000357368.4:c.1249G>A	p.Val417Met	p.V417M	ENST00000357368	NM_002850.3	417	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	142	484	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	99	277	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866359	37866359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	27	488	0	ENST00000269571.5:c.664G>T	p.Gly222Cys	p.G222C	ENST00000269571		222	Ggt/Tgt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640660	3640660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	87	621	0	ENST00000294008.3:c.2979G>T	p.Glu993Asp	p.E993D	ENST00000294008	NM_032444.2	993	gaG/gaT																																																																														
ALK	238	MSKCC	GRCh37	2	30143479	30143479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs542229113		P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	21	224	0	ENST00000389048.3:c.47C>T	p.Thr16Met	p.T16M	ENST00000389048	NM_004304.4	16	aCg/aTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189612188	189612188	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774550896		P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	33	400	0	ENST00000264731.3:c.1940G>A	p.Arg647His	p.R647H	ENST00000264731	NM_003722.4	647	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245512	153245512	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	100	289	0	ENST00000281708.4:c.1679A>T	p.Asp560Val	p.D560V	ENST00000281708	NM_033632.3	560	gAt/gTt																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031930	26031930	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	65	225	0	ENST00000244661.2:c.359T>C	p.Ile120Thr	p.I120T	ENST00000244661	NM_003537.3	120	aTt/aCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0034131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	700	575	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589579	67589593	+	inframe_deletion	In_Frame_Del	DEL	AAATTACATGAATAT	AAATTACATGAATAT	-			P-0034131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	226	251	0	ENST00000274335.5:c.1344_1358del	p.Lys448_Tyr452del	p.K448_Y452del	ENST00000274335		448	AAATTACATGAATAT/-																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073570	8073571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	250	413	1	ENST00000377482.5:c.1088dup	p.Leu364ThrfsTer12	p.L364Tfs*12	ENST00000377482	NM_018948.3	363	gca/gcCa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720675	89720675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	70	194	0	ENST00000371953.3:c.826A>G	p.Asn276Asp	p.N276D	ENST00000371953	NM_000314.4	276	Aat/Gat																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806573	1806573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	120	539	0	ENST00000260795.2:c.1289C>T	p.Ser430Phe	p.S430F	ENST00000260795		430	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0034322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	68	682	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481696	56481696	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0034322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	44	787	0	ENST00000267101.3:c.731T>C	p.Phe244Ser	p.F244S	ENST00000267101	NM_001982.3	244	tTt/tCt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371690	225371690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	38	546	0	ENST00000264414.4:c.914G>T	p.Arg305Leu	p.R305L	ENST00000264414	NM_003590.4	305	cGt/cTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720676	89720676	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	10	246	0	ENST00000371953.3:c.827A>C	p.Asn276Thr	p.N276T	ENST00000371953	NM_000314.4	276	aAt/aCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	263	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934874		P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	313	725	2	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	59	283	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964491	70964491	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1447674775		P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	201	629	1	ENST00000276594.2:c.1537G>A	p.Gly513Arg	p.G513R	ENST00000276594	NM_024504.3	513	Ggg/Agg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669586	88669586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	102	300	0	ENST00000360948.2:c.1312C>A	p.Leu438Ile	p.L438I	ENST00000360948	NM_001012338.2	438	Ctt/Att																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400116	41400116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	282	479	0	ENST00000373198.4:c.643G>T	p.Ala215Ser	p.A215S	ENST00000373198	NM_133170.3	215	Gct/Tct																																																																														
ERG	2078	MSKCC	GRCh37	21	39762962	39762962	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	22	269	0	ENST00000288319.7:c.874C>A	p.Pro292Thr	p.P292T	ENST00000288319	NM_182918.3	292	Cct/Act																																																																														
MET	4233	MSKCC	GRCh37	7	116411923	116411923	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34589476		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	280	983	1	ENST00000397752.3:c.2908C>T	p.Arg970Cys	p.R970C	ENST00000397752	NM_000245.2	970	Cgc/Tgc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460516	149460516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	254	765	2	ENST00000286301.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000286301	NM_005211.3	41	Cga/Tga																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866439	42866439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61735791		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	348	994	1	ENST00000398585.3:c.193G>A	p.Ala65Thr	p.A65T	ENST00000398585	NM_001135099.1	65	Gca/Aca																																																																														
MED12	9968	MSKCC	GRCh37	X	70345955	70345955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	176	634	0	ENST00000374080.3:c.2492C>T	p.Ala831Val	p.A831V	ENST00000374080		831	gCt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	264	555	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
NF2	4771	MSKCC	GRCh37	22	30057302	30057302	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74315496		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	110	400	0	ENST00000338641.4:c.784C>T	p.Arg262Ter	p.R262*	ENST00000338641	NM_000268.3	262	Cga/Tga																																																																														
SYK	6850	MSKCC	GRCh37	9	93650881	93650881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200438123		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	188	502	0	ENST00000375746.1:c.1807G>A	p.Asp603Asn	p.D603N	ENST00000375746	NM_001174167.1	603	Gat/Aat																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128015293	128015293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770995913		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	157	493	0	ENST00000285398.2:c.2228G>A	p.Arg743His	p.R743H	ENST00000285398	NM_000122.1	743	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	104	364	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
IDH1	3417	MSKCC	GRCh37	2	209108185	209108185	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751364381		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	126	489	1	ENST00000345146.2:c.664C>T	p.Arg222Cys	p.R222C	ENST00000345146	NM_005896.2	222	Cgt/Tgt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638899	176638899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750922390		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	231	611	1	ENST00000439151.2:c.3499C>T	p.Arg1167Cys	p.R1167C	ENST00000439151	NM_022455.4	1167	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3823855	3823855	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117910358		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	69	729	1	ENST00000262367.5:c.2360C>T	p.Ala787Val	p.A787V	ENST00000262367	NM_004380.2	787	gCg/gTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76909629	76909629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	142	729	1	ENST00000373344.5:c.4276C>T	p.Arg1426Ter	p.R1426*	ENST00000373344	NM_000489.3	1426	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675248	176675248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201483724		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	114	290	2	ENST00000439151.2:c.4564G>A	p.Asp1522Asn	p.D1522N	ENST00000439151	NM_022455.4	1522	Gat/Aat																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs797045586		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	73	257	0	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629583	187629583	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201582617		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	250	737	0	ENST00000441802.2:c.1399G>T	p.Ala467Ser	p.A467S	ENST00000441802	NM_005245.3	467	Gcg/Tcg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61711081	61711081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs996736538		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	103	419	0	ENST00000401558.2:c.2668G>A	p.Ala890Thr	p.A890T	ENST00000401558	NM_003400.3	890	Gca/Aca																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138570	2138570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45517423		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	98	850	3	ENST00000219476.3:c.5383C>T	p.Arg1795Cys	p.R1795C	ENST00000219476	NM_000548.3	1795	Cgc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1060503077		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	80	248	0	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	179	672	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968595	55968595	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199504669		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	55	675	0	ENST00000263923.4:c.2068G>A	p.Ala690Thr	p.A690T	ENST00000263923	NM_002253.2	690	Gca/Aca																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980426	7980426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759484732		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	292	833	0	ENST00000319144.4:c.1157G>A	p.Arg386His	p.R386H	ENST00000319144	NM_001139.2	386	cGc/cAc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675823	30675823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	234	995	0	ENST00000376406.3:c.2533G>A	p.Asp845Asn	p.D845N	ENST00000376406	NM_014641.2	845	Gat/Aat																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467675	50467675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759124417		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	146	541	0	ENST00000331340.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000331340	NM_006060.4	304	Gaa/Aaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638456	176638456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750354456		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	197	820	0	ENST00000439151.2:c.3056G>A	p.Arg1019His	p.R1019H	ENST00000439151	NM_022455.4	1019	cGc/cAc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740216	162740216	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775098890		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	153	510	1	ENST00000367921.3:c.1418G>A	p.Arg473His	p.R473H	ENST00000367921	NM_006182.2	473	cGc/cAc																																																																														
SMO	6608	MSKCC	GRCh37	7	128846040	128846040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	253	973	1	ENST00000249373.3:c.970G>A	p.Ala324Thr	p.A324T	ENST00000249373	NM_005631.4	324	Gcc/Acc																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	121	418	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127447	55127447	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1333247214		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	200	657	0	ENST00000257290.5:c.235G>A	p.Gly79Ser	p.G79S	ENST00000257290	NM_006206.4	79	Ggc/Agc																																																																														
INSR	3643	MSKCC	GRCh37	19	7174624	7174624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771406570		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	238	713	1	ENST00000302850.5:c.1093G>A	p.Gly365Arg	p.G365R	ENST00000302850	NM_000208.2	365	Ggg/Agg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	222	685	0	ENST00000250448.2:c.781C>A	p.Arg261Ser	p.R261S	ENST00000250448	NM_004496.3	261	Cgc/Agc																																																																														
MST1	4485	MSKCC	GRCh37	3	49725295	49725295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760608948		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	206	606	0	ENST00000449682.2:c.130C>T	p.Arg44Trp	p.R44W	ENST00000449682	NM_020998.3	44	Cgg/Tgg																																																																														
LATS1	9113	MSKCC	GRCh37	6	149982884	149982884	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1327531500		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	99	506	0	ENST00000253339.5:c.3374G>A	p.Arg1125His	p.R1125H	ENST00000253339		1125	cGc/cAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65323452	65323452	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765489448		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	189	522	0	ENST00000342505.4:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000342505	NM_002227.2	449	Gcc/Acc																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	139	544	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888121	81888121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762900860		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	163	564	2	ENST00000359376.3:c.266G>A	p.Arg89His	p.R89H	ENST00000359376	NM_002661.3	89	cGc/cAc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874604	35874604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137868226		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	150	575	1	ENST00000303115.3:c.760G>A	p.Ala254Thr	p.A254T	ENST00000303115	NM_002185.3	254	Gct/Act																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047329	128047329	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748503195		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	187	508	0	ENST00000285398.2:c.593G>A	p.Arg198His	p.R198H	ENST00000285398	NM_000122.1	198	cGc/cAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136070	64136070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	188	729	0	ENST00000334205.4:c.1331G>A	p.Arg444His	p.R444H	ENST00000334205	NM_003942.2	444	cGc/cAc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279645	18279645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	173	652	2	ENST00000222254.8:c.1918C>T	p.Arg640Trp	p.R640W	ENST00000222254	NM_005027.3	640	Cgg/Tgg																																																																														
WT1	7490	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	270	671	0	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	100	269	0	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491390	18491390	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1377942847		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	86	251	2	ENST00000266497.5:c.1309del	p.Ile437TyrfsTer5	p.I437Yfs*5	ENST00000266497		435	Aaa/aa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243232	123243232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	273	925	0	ENST00000358487.5:c.2281C>A	p.Leu761Ile	p.L761I	ENST00000358487	NM_000141.4	761	Ctc/Atc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748509	43748509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371177206		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	119	384	0	ENST00000523873.1:c.463C>T	p.Arg155Cys	p.R155C	ENST00000523873		155	Cgc/Tgc																																																																														
RARA	5914	MSKCC	GRCh37	17	38510723	38510723	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752501819		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	140	516	0	ENST00000254066.5:c.977C>T	p.Thr326Met	p.T326M	ENST00000254066	NM_000964.3	326	aCg/aTg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131895051	131895051	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370769989		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	85	283	0	ENST00000265335.6:c.205G>A	p.Asp69Asn	p.D69N	ENST00000265335		69	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108205756	108205756	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531980488		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	116	365	0	ENST00000278616.4:c.8071C>T	p.Arg2691Cys	p.R2691C	ENST00000278616	NM_000051.3	2691	Cgc/Tgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132465	11132465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	260	838	1	ENST00000344626.4:c.2681C>T	p.Thr894Met	p.T894M	ENST00000344626	NM_003072.3	894	aCg/aTg																																																																														
RET	5979	MSKCC	GRCh37	10	43596068	43596068	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs537523906		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	215	769	1	ENST00000355710.3:c.235C>T	p.Arg79Trp	p.R79W	ENST00000355710	NM_020975.4	79	Cgg/Tgg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17951085	17951085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	235	690	1	ENST00000458235.1:c.1208G>A	p.Arg403His	p.R403H	ENST00000458235	NM_000215.3	403	cGc/cAc																																																																														
RET	5979	MSKCC	GRCh37	10	43617397	43617397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	154	522	0	ENST00000355710.3:c.2734C>T	p.Arg912Trp	p.R912W	ENST00000355710	NM_020975.4	912	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830751	72830751	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761415382		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	235	699	0	ENST00000268489.5:c.5830G>A	p.Ala1944Thr	p.A1944T	ENST00000268489	NM_006885.3	1944	Gcc/Acc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369295620		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	70	780	0	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561436	9561436	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757167550		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	178	563	0	ENST00000353224.5:c.346G>A	p.Gly116Ser	p.G116S	ENST00000353224	NM_177990.2	116	Ggt/Agt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033753	48033753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	79	305	0	ENST00000234420.5:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000234420	NM_000179.2	1322	Gaa/Taa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047800	128047800	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	136	478	0	ENST00000285398.2:c.521G>T	p.Arg174Ile	p.R174I	ENST00000285398	NM_000122.1	174	aGa/aTa																																																																														
HGF	3082	MSKCC	GRCh37	7	81372746	81372746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	123	383	0	ENST00000222390.5:c.788C>T	p.Pro263Leu	p.P263L	ENST00000222390	NM_000601.4	263	cCc/cTc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856365	111856365	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750857643		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	107	201	0	ENST00000341259.2:c.416G>A	p.Arg139His	p.R139H	ENST00000341259	NM_005475.2	139	cGc/cAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851891	134851891	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs769821589		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	168	526	0	ENST00000398015.3:c.1297G>A	p.Ala433Thr	p.A433T	ENST00000398015	NM_004441.4	433	Gcc/Acc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5238951	5238951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1237159914		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	151	515	0	ENST00000357368.4:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000357368	NM_002850.3	610	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	29443675	29443675	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1034835558		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	188	676	0	ENST00000389048.3:c.3542G>A	p.Arg1181His	p.R1181H	ENST00000389048	NM_004304.4	1181	cGc/cAc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739881	145739881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764297840		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	214	796	0	ENST00000428558.2:c.1649C>T	p.Ala550Val	p.A550V	ENST00000428558	NM_004260.3	550	gCg/gTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98240450	98240450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370354759		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	177	501	1	ENST00000331920.6:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000331920	NM_000264.3	412	Gca/Aca																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164451	36164451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	105	437	2	ENST00000300305.3:c.1424C>T	p.Ala475Val	p.A475V	ENST00000300305		475	gCc/gTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808989	1808989	+	stop_lost	Nonstop_Mutation	SNP	A	A	G	rs121913103		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	89	450	0	ENST00000260795.2:c.2421A>G	p.Ter807TrpextTer101	p.*807Wext*101	ENST00000260795		807	tgA/tgG																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4101031	4101031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375843855		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	191	603	0	ENST00000262948.5:c.691C>T	p.Arg231Cys	p.R231C	ENST00000262948	NM_030662.3	231	Cgc/Tgc																																																																														
ABL1	25	MSKCC	GRCh37	9	133759406	133759406	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1371645607		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	44	746	2	ENST00000318560.5:c.1729C>T	p.Arg577Ter	p.R577*	ENST00000318560	NM_005157.4	577	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1054243525		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	202	567	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40368097	40368097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	86	659	2	ENST00000293328.3:c.1408G>A	p.Val470Ile	p.V470I	ENST00000293328	NM_012448.3	470	Gtt/Att																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533680	63533680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	202	678	1	ENST00000307078.5:c.1474G>A	p.Ala492Thr	p.A492T	ENST00000307078	NM_004655.3	492	Gcc/Acc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201885	152201885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778449608		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	157	377	1	ENST00000206249.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000206249	NM_000125.3	247	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059183	27059183	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	151	457	0	ENST00000324856.7:c.1820C>A	p.Ser607Ter	p.S607*	ENST00000324856	NM_006015.4	607	tCa/tAa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5265025	5265025	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	93	771	0	ENST00000357368.4:c.562C>T	p.Arg188Ter	p.R188*	ENST00000357368	NM_002850.3	188	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1279531	1279531	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372140951		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	214	1053	0	ENST00000310581.5:c.2005C>T	p.Arg669Trp	p.R669W	ENST00000310581	NM_198253.2	669	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214666	5214666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116660613		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	297	923	0	ENST00000357368.4:c.4400C>T	p.Pro1467Leu	p.P1467L	ENST00000357368	NM_002850.3	1467	cCg/cTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524347	187524347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773283301		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	60	504	1	ENST00000441802.2:c.11333C>T	p.Ala3778Val	p.A3778V	ENST00000441802	NM_005245.3	3778	gCg/gTg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39728765	39728765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	122	411	0	ENST00000361337.2:c.1045A>G	p.Arg349Gly	p.R349G	ENST00000361337	NM_003286.2	349	Agg/Ggg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224539	123224539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	142	705	0	ENST00000218089.9:c.3392G>T	p.Arg1131Ile	p.R1131I	ENST00000218089	NM_001042749.1	1131	aGa/aTa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508932	106508932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	125	445	0	ENST00000359195.3:c.926C>T	p.Thr309Met	p.T309M	ENST00000359195	NM_002649.2	309	aCg/aTg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912175	29912175	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs41547331		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	18	224	0	ENST00000376809.5:c.895+1G>A		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																															
BTK	695	MSKCC	GRCh37	X	100609658	100609658	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782740486		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	172	493	1	ENST00000308731.7:c.1591G>A	p.Asp531Asn	p.D531N	ENST00000308731	NM_000061.2	531	Gat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448601	89448601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775665893		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	168	613	2	ENST00000336596.2:c.1565G>A	p.Arg522His	p.R522H	ENST00000336596	NM_005233.5	522	cGc/cAc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652248	48652248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057518396		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	53	722	0	ENST00000376670.3:c.919C>T	p.Arg307Cys	p.R307C	ENST00000376670	NM_002049.3	307	Cgc/Tgc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56176614	56176614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	127	394	0	ENST00000399503.3:c.2164G>T	p.Glu722Ter	p.E722*	ENST00000399503	NM_005921.1	722	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	427465	427465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769625142		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	179	700	1	ENST00000399788.2:c.2704C>T	p.Arg902Trp	p.R902W	ENST00000399788	NM_001042603.1	902	Cgg/Tgg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520205	176520205	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766563138		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	290	1032	0	ENST00000292408.4:c.1124C>T	p.Ser375Leu	p.S375L	ENST00000292408	NM_213647.1	375	tCg/tTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528936	157528936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1390972891		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	211	593	1	ENST00000346085.5:c.6661C>T	p.Arg2221Trp	p.R2221W	ENST00000346085	NM_020732.3	2221	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245501	153245501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1024060344		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	147	508	0	ENST00000281708.4:c.1690C>T	p.Arg564Cys	p.R564C	ENST00000281708	NM_033632.3	564	Cgt/Tgt																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911141	29911141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	114	742	0	ENST00000376809.5:c.440A>G	p.Tyr147Cys	p.Y147C	ENST00000376809	NM_002116.7	147	tAc/tGc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953115	81953115	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1336595726		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	104	386	0	ENST00000359376.3:c.2081G>A	p.Arg694His	p.R694H	ENST00000359376	NM_002661.3	694	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720871	89720871	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	158	382	0	ENST00000371953.3:c.1022T>G	p.Phe341Cys	p.F341C	ENST00000371953	NM_000314.4	341	tTt/tGt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100283	8100283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	211	716	0	ENST00000346208.3:c.257G>A	p.Arg86His	p.R86H	ENST00000346208		86	cGc/cAc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984022	2984022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753614569		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	205	730	1	ENST00000396946.4:c.508C>T	p.Arg170Cys	p.R170C	ENST00000396946	NM_032415.4	170	Cgc/Tgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371710	89371710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764805663		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	261	848	0	ENST00000301030.4:c.130C>T	p.Arg44Cys	p.R44C	ENST00000301030	NM_001256183.1	44	Cgt/Tgt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136030	64136030	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1380280944		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	265	800	1	ENST00000334205.4:c.1291C>T	p.Arg431Cys	p.R431C	ENST00000334205	NM_003942.2	431	Cgc/Tgc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553485	106553485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	97	414	0	ENST00000369096.4:c.1450C>T	p.Pro484Ser	p.P484S	ENST00000369096	NM_001198.3	484	Ccc/Tcc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112328	115112328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1438073122		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	23	464	3	ENST00000257566.3:c.1412G>A	p.Arg471His	p.R471H	ENST00000257566	NM_016569.3	471	cGc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100906	41100906	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs560503250		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	154	630	1	ENST00000373198.4:c.1450G>A	p.Val484Ile	p.V484I	ENST00000373198	NM_133170.3	484	Gtt/Att																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942193	71942193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749091098		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	226	790	0	ENST00000298229.2:c.1457G>A	p.Arg486His	p.R486H	ENST00000298229	NM_001567.3	486	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112177368	112177368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	99	341	1	ENST00000257430.4:c.6077C>T	p.Ser2026Phe	p.S2026F	ENST00000257430	NM_000038.5	2026	tCt/tTt																																																																														
APC	324	MSKCC	GRCh37	5	112178864	112178864	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774952444		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	72	408	0	ENST00000257430.4:c.7573C>T	p.Arg2525Cys	p.R2525C	ENST00000257430	NM_000038.5	2525	Cgc/Tgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393421	139393421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	279	879	1	ENST00000277541.6:c.6110C>T	p.Ala2037Val	p.A2037V	ENST00000277541	NM_017617.3	2037	gCc/gTc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760790	133760790	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367600262		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	43	857	1	ENST00000318560.5:c.3113C>T	p.Ala1038Val	p.A1038V	ENST00000318560	NM_005157.4	1038	gCg/gTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76937356	76937356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	154	581	0	ENST00000373344.5:c.3392G>T	p.Arg1131Ile	p.R1131I	ENST00000373344	NM_000489.3	1131	aGa/aTa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4090609	4090609	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751040819		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	141	642	2	ENST00000262948.5:c.1190G>A	p.Arg397His	p.R397H	ENST00000262948	NM_030662.3	397	cGc/cAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934222	39934222	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1358504792		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	219	847	0	ENST00000378444.4:c.377C>T	p.Pro126Leu	p.P126L	ENST00000378444	NM_001123385.1	126	cCg/cTg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028136	48028136	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782324		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	116	364	1	ENST00000234420.5:c.3014G>A	p.Arg1005Gln	p.R1005Q	ENST00000234420	NM_000179.2	1005	cGa/cAa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349892	15349892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1427595023		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	217	807	0	ENST00000263377.2:c.3760C>T	p.Arg1254Trp	p.R1254W	ENST00000263377	NM_058243.2	1254	Cgg/Tgg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348106	89348106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	323	1070	0	ENST00000301030.4:c.4844C>T	p.Ser1615Phe	p.S1615F	ENST00000301030	NM_001256183.1	1615	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344548	118344548	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	143	397	0	ENST00000534358.1:c.2674A>G	p.Lys892Glu	p.K892E	ENST00000534358	NM_005933.3	892	Aaa/Gaa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754303	57754303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	144	593	0	ENST00000274289.3:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000274289	NM_006622.3	183	cGa/cAa																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40376874	40376874	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199894785		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	174	532	2	ENST00000293328.3:c.298C>T	p.Arg100Cys	p.R100C	ENST00000293328	NM_012448.3	100	Cgc/Tgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046722	180046722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768562688		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	53	981	0	ENST00000261937.6:c.2590G>A	p.Ala864Thr	p.A864T	ENST00000261937	NM_182925.4	864	Gct/Act																																																																														
MET	4233	MSKCC	GRCh37	7	116414341	116414341	+	intron_variant	Intron	SNP	G	G	A	rs929061044		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	252	927	0	ENST00000397752.3:c.3029-594G>A		p.*1010*	ENST00000397752	NM_000245.2																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118377048	118377048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	131	420	0	ENST00000534358.1:c.10441C>T	p.Pro3481Ser	p.P3481S	ENST00000534358	NM_005933.3	3481	Ccc/Tcc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670085	86670085	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	55	379	0	ENST00000274376.6:c.1882A>C	p.Thr628Pro	p.T628P	ENST00000274376	NM_002890.2	628	Act/Cct																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495826	56495826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	79	366	0	ENST00000267101.3:c.4016C>T	p.Ala1339Val	p.A1339V	ENST00000267101	NM_001982.3	1339	gCc/gTc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627218	37627218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375280392		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	194	564	1	ENST00000447079.4:c.1133G>A	p.Arg378His	p.R378H	ENST00000447079	NM_015083.1	378	cGc/cAc																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519712	137519712	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs560014238		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	91	423	0	ENST00000367739.4:c.926C>T	p.Thr309Met	p.T309M	ENST00000367739	NM_000416.2	309	aCg/aTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984079	2984079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	191	588	1	ENST00000396946.4:c.451G>A	p.Glu151Lys	p.E151K	ENST00000396946	NM_032415.4	151	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133226035	133226035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200398117		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	252	810	1	ENST00000320574.5:c.3862G>A	p.Ala1288Thr	p.A1288T	ENST00000320574	NM_006231.2	1288	Gcc/Acc																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281668	49281668	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201815757		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	274	944	2	ENST00000282018.3:c.715C>T	p.Arg239Trp	p.R239W	ENST00000282018	NM_020377.2	239	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211883	36211883	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202218975		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	376	1209	1	ENST00000222270.7:c.1634G>A	p.Arg545Gln	p.R545Q	ENST00000222270	NM_014727.1	545	cGa/cAa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39690130	39690130	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	65	234	0	ENST00000361337.2:c.155G>T	p.Ser52Ile	p.S52I	ENST00000361337	NM_003286.2	52	aGt/aTt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3113452	3113452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	242	689	0	ENST00000078429.4:c.446G>A	p.Arg149His	p.R149H	ENST00000078429	NM_002067.2	149	cGc/cAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285167	15285167	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs940480447		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	348	1069	2	ENST00000263388.2:c.4448G>A	p.Arg1483His	p.R1483H	ENST00000263388	NM_000435.2	1483	cGc/cAc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250311	110250311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753267332		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	249	929	0	ENST00000374672.4:c.364G>A	p.Ala122Thr	p.A122T	ENST00000374672	NM_004235.4	122	Gcc/Acc																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348978	11348978	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774980003		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	308	754	0	ENST00000332029.2:c.358G>A	p.Ala120Thr	p.A120T	ENST00000332029	NM_003745.1	120	Gcc/Acc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041379	47041379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	267	846	0	ENST00000329236.7:c.1489G>A	p.Asp497Asn	p.D497N	ENST00000329236	NM_001204466.1	497	Gat/Aat																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226080	2226080	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1397292006		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	290	967	1	ENST00000326181.6:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000326181	NM_032271.2	593	Cgg/Tgg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40857171	40857171	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1287411309		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	71	419	0	ENST00000428826.2:c.1870G>A	p.Gly624Arg	p.G624R	ENST00000428826		624	Gga/Aga																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250360	10250360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	75	321	0	ENST00000340748.4:c.3892G>A	p.Val1298Met	p.V1298M	ENST00000340748		1298	Gtg/Atg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511205	148511205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	175	523	2	ENST00000320356.2:c.1697G>A	p.Arg566His	p.R566H	ENST00000320356	NM_004456.4	566	cGc/cAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399488	139399488	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748862853		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	69	982	1	ENST00000277541.6:c.4655C>T	p.Ala1552Val	p.A1552V	ENST00000277541	NM_017617.3	1552	gCg/gTg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533512	63533512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367624903		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	254	923	1	ENST00000307078.5:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000307078	NM_004655.3	548	Gag/Aag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245300	41245300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	250	919	0	ENST00000357654.3:c.2248C>T	p.Leu750Phe	p.L750F	ENST00000357654	NM_007294.3	750	Ctc/Ttc																																																																														
TEK	7010	MSKCC	GRCh37	9	27212815	27212815	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1307510192		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	260	808	1	ENST00000380036.4:c.2797G>A	p.Ala933Thr	p.A933T	ENST00000380036	NM_000459.3	933	Gcg/Acg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020732	37020732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	143	562	3	ENST00000358127.4:c.113G>A	p.Arg38His	p.R38H	ENST00000358127	NM_001280556.1	38	cGc/cAc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931411	131931411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs772468452		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	51	424	0	ENST00000265335.6:c.2116C>T	p.Arg706Ter	p.R706*	ENST00000265335		706	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564680	86564680	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775315018		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	215	702	0	ENST00000274376.6:c.412C>T	p.Pro138Ser	p.P138S	ENST00000274376	NM_002890.2	138	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445125	49445125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs565042425		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	213	777	2	ENST00000301067.7:c.2341G>A	p.Ala781Thr	p.A781T	ENST00000301067	NM_003482.3	781	Gct/Act																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45657076	45657076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770959767		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	24	417	1	ENST00000407780.3:c.80C>T	p.Ala27Val	p.A27V	ENST00000407780	NM_001283052.1	27	gCg/gTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867301	45867301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1269826858		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	210	988	0	ENST00000391945.4:c.892G>A	p.Ala298Thr	p.A298T	ENST00000391945	NM_000400.3	298	Gcc/Acc																																																																														
CBFB	865	MSKCC	GRCh37	16	67116170	67116170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761036715		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	186	474	0	ENST00000412916.2:c.454G>A	p.Glu152Lys	p.E152K	ENST00000412916		152	Gaa/Aaa																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40368072	40368072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	108	737	1	ENST00000293328.3:c.1433C>T	p.Ala478Val	p.A478V	ENST00000293328	NM_012448.3	478	gCg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927471	178927471	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	125	533	0	ENST00000263967.3:c.1234C>T	p.Arg412Ter	p.R412*	ENST00000263967	NM_006218.2	412	Cga/Tga																																																																														
PALB2	79728	MSKCC	GRCh37	16	23649273	23649273	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200048921		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	136	444	0	ENST00000261584.4:c.109C>T	p.Arg37Cys	p.R37C	ENST00000261584	NM_024675.3	37	Cgt/Tgt																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622622	158622622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	194	579	0	ENST00000263640.3:c.877G>A	p.Asp293Asn	p.D293N	ENST00000263640	NM_001105.4	293	Gac/Aac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292463	15292463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	315	969	1	ENST00000263388.2:c.2716G>A	p.Ala906Thr	p.A906T	ENST00000263388	NM_000435.2	906	Gcc/Acc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639963	3639963	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142008398		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	268	972	1	ENST00000294008.3:c.3676C>T	p.Arg1226Trp	p.R1226W	ENST00000294008	NM_032444.2	1226	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573507	48573507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	63	298	0	ENST00000342988.3:c.91G>A	p.Glu31Lys	p.E31K	ENST00000342988	NM_005359.5	31	Gag/Aag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635202	87635202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1170229422		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	180	616	1	ENST00000277120.3:c.2254G>A	p.Val752Ile	p.V752I	ENST00000277120		752	Gtc/Atc																																																																														
RET	5979	MSKCC	GRCh37	10	43604643	43604643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	202	723	0	ENST00000355710.3:c.1228C>T	p.Leu410Phe	p.L410F	ENST00000355710	NM_020975.4	410	Ctc/Ttc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139408993	139408993	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746313097		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	303	919	3	ENST00000277541.6:c.2176G>A	p.Val726Ile	p.V726I	ENST00000277541	NM_017617.3	726	Gtc/Atc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851906	63851906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	32	562	0	ENST00000279873.7:c.2684C>T	p.Ala895Val	p.A895V	ENST00000279873	NM_032199.2	895	gCg/gTg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598311	28598311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1480732926		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	372	984	0	ENST00000253063.3:c.283C>T	p.Arg95Cys	p.R95C	ENST00000253063	NM_031459.4	95	Cgc/Tgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170804	11170804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1306144699		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	247	699	0	ENST00000344626.4:c.4852C>T	p.Arg1618Ter	p.R1618*	ENST00000344626	NM_003072.3	1618	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528243	157528243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs797045283		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	54	644	0	ENST00000346085.5:c.5968C>T	p.Arg1990Ter	p.R1990*	ENST00000346085	NM_020732.3	1990	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29664524	29664524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	211	655	0	ENST00000358273.4:c.6566C>A	p.Pro2189His	p.P2189H	ENST00000358273	NM_001042492.2	2189	cCt/cAt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160646	56160646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1343464548		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	28	357	1	ENST00000399503.3:c.920G>A	p.Arg307His	p.R307H	ENST00000399503	NM_005921.1	307	cGt/cAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52723074	52723074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	160	565	0	ENST00000322088.6:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000322088	NM_014225.5	420	cGg/cAg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2122297	2122297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45517215		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	355	987	1	ENST00000219476.3:c.2153G>A	p.Arg718His	p.R718H	ENST00000219476	NM_000548.3	718	cGc/cAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374685	118374685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	101	409	0	ENST00000534358.1:c.8078C>A	p.Ser2693Tyr	p.S2693Y	ENST00000534358	NM_005933.3	2693	tCt/tAt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867477	35867477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	74	306	0	ENST00000303115.3:c.291G>T	p.Lys97Asn	p.K97N	ENST00000303115	NM_002185.3	97	aaG/aaT																																																																														
MTOR	2475	MSKCC	GRCh37	1	11169345	11169345	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	142	460	0	ENST00000361445.4:c.7528+2T>C		p.X2510_splice	ENST00000361445	NM_004958.3	2510																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272460	11272460	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	181	525	0	ENST00000361445.4:c.3470A>G	p.His1157Arg	p.H1157R	ENST00000361445	NM_004958.3	1157	cAc/cGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202759	16202759	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375675403		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	40	521	1	ENST00000375759.3:c.467C>T	p.Thr156Met	p.T156M	ENST00000375759	NM_015001.2	156	aCg/aTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256472	16256472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	201	673	0	ENST00000375759.3:c.3737G>T	p.Arg1246Ile	p.R1246I	ENST00000375759	NM_015001.2	1246	aGa/aTa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261895	16261895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	169	552	1	ENST00000375759.3:c.9160G>A	p.Ala3054Thr	p.A3054T	ENST00000375759	NM_015001.2	3054	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023637	27023637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	220	751	0	ENST00000324856.7:c.743G>A	p.Gly248Asp	p.G248D	ENST00000324856	NM_006015.4	248	gGc/gAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087566	27087566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	40	751	0	ENST00000324856.7:c.2140C>T	p.Leu714Phe	p.L714F	ENST00000324856	NM_006015.4	714	Ctc/Ttc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099436	27099436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	162	583	0	ENST00000324856.7:c.3673T>C	p.Ser1225Pro	p.S1225P	ENST00000324856	NM_006015.4	1225	Tcc/Ccc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105775	27105775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	149	514	0	ENST00000324856.7:c.5386C>T	p.Pro1796Ser	p.P1796S	ENST00000324856	NM_006015.4	1796	Cca/Tca																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932037	36932037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	148	693	1	ENST00000361632.4:c.2432G>A	p.Cys811Tyr	p.C811Y	ENST00000361632		811	tGt/tAt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939054	36939054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	261	808	1	ENST00000361632.4:c.655C>T	p.Leu219Phe	p.L219F	ENST00000361632		219	Ctt/Ttt																																																																														
MPL	4352	MSKCC	GRCh37	1	43805227	43805227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	154	749	0	ENST00000372470.3:c.677C>T	p.Ser226Phe	p.S226F	ENST00000372470	NM_005373.2	226	tCc/tTc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798295	45798295	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	200	754	0	ENST00000372115.3:c.599G>C	p.Gly200Ala	p.G200A	ENST00000372115	NM_001048171.1	200	gGc/gCc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46546387	46546387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	96	474	0	ENST00000262741.5:c.142G>A	p.Ala48Thr	p.A48T	ENST00000262741	NM_003629.3	48	Gca/Aca																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332758	65332758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	124	492	0	ENST00000342505.4:c.781G>A	p.Val261Met	p.V261M	ENST00000342505	NM_002227.2	261	Gtg/Atg																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736465	85736465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	126	463	0	ENST00000370580.1:c.182G>T	p.Ser61Ile	p.S61I	ENST00000370580	NM_003921.4	61	aGt/aTt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273206	115273206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	149	538	0	ENST00000438362.2:c.1252A>G	p.Met418Val	p.M418V	ENST00000438362	NM_001242891.1	418	Atg/Gtg																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695773	117695773	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs768183667		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	163	509	0	ENST00000369458.3:c.664A>G	p.Thr222Ala	p.T222A	ENST00000369458	NM_024626.3	222	Aca/Gca																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838329	156838329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1228967598		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	291	1058	0	ENST00000524377.1:c.607G>A	p.Ala203Thr	p.A203T	ENST00000524377	NM_002529.3	203	Gcc/Acc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849143	156849143	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775191394		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	203	941	1	ENST00000524377.1:c.2035G>A	p.Asp679Asn	p.D679N	ENST00000524377	NM_002529.3	679	Gac/Aac																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724599	162724599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	28	538	0	ENST00000367921.3:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000367921	NM_006182.2	124	cGg/cAg																																																																														
NUF2	83540	MSKCC	GRCh37	1	163297304	163297304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	154	614	0	ENST00000271452.3:c.150G>T	p.Met50Ile	p.M50I	ENST00000271452	NM_145697.2	50	atG/atT																																																																														
NUF2	83540	MSKCC	GRCh37	1	163307820	163307820	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139996430		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	53	310	0	ENST00000271452.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000271452	NM_145697.2	149	gCg/gTg																																																																														
NUF2	83540	MSKCC	GRCh37	1	163313637	163313637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	29	155	0	ENST00000271452.3:c.784G>A	p.Val262Ile	p.V262I	ENST00000271452	NM_145697.2	262	Gtc/Atc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176015444	176015444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	39	412	0	ENST00000367669.3:c.1294G>T	p.Asp432Tyr	p.D432Y	ENST00000367669	NM_022457.5	432	Gat/Tat																																																																														
PARP1	142	MSKCC	GRCh37	1	226570853	226570853	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	154	559	0	ENST00000366794.5:c.1043T>C	p.Leu348Ser	p.L348S	ENST00000366794	NM_001618.3	348	tTg/tCg																																																																														
FH	2271	MSKCC	GRCh37	1	241677006	241677006	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	98	401	0	ENST00000366560.3:c.275T>C	p.Val92Ala	p.V92A	ENST00000366560	NM_000143.3	92	gTt/gCt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243778453	243778453	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767433650		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	103	383	0	ENST00000263826.5:c.572C>T	p.Ala191Val	p.A191V	ENST00000263826	NM_005465.4	191	gCa/gTa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100684	8100684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	203	814	0	ENST00000346208.3:c.658A>G	p.Thr220Ala	p.T220A	ENST00000346208		220	Acc/Gcc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106097	8106097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	118	439	1	ENST00000346208.3:c.917G>T	p.Arg306Met	p.R306M	ENST00000346208		306	aGg/aTg																																																																														
RET	5979	MSKCC	GRCh37	10	43596006	43596006	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	243	816	0	ENST00000355710.3:c.173A>G	p.Asp58Gly	p.D58G	ENST00000355710	NM_020975.4	58	gAc/gGc																																																																														
RET	5979	MSKCC	GRCh37	10	43613826	43613826	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	174	849	0	ENST00000355710.3:c.2290G>C	p.Ala764Pro	p.A764P	ENST00000355710	NM_020975.4	764	Gcc/Ccc																																																																														
TET1	80312	MSKCC	GRCh37	10	70405030	70405030	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1480841047		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	137	613	0	ENST00000373644.4:c.2544T>G	p.Ser848Arg	p.S848R	ENST00000373644	NM_030625.2	848	agT/agG																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710631	114710631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	99	412	0	ENST00000543371.1:c.116G>T	p.Arg39Met	p.R39M	ENST00000543371	NM_001198531.1	39	aGg/aTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258056	123258056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	58	681	0	ENST00000358487.5:c.1625G>A	p.Gly542Glu	p.G542E	ENST00000358487	NM_000141.4	542	gGg/gAg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123260408	123260408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	239	641	2	ENST00000358487.5:c.1493C>T	p.Ala498Val	p.A498V	ENST00000358487	NM_000141.4	498	gCg/gTg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741372	17741372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	326	1023	2	ENST00000250003.3:c.43G>A	p.Ala15Thr	p.A15T	ENST00000250003	NM_002478.4	15	Gcc/Acc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741756	17741756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	196	762	2	ENST00000250003.3:c.427C>T	p.Arg143Trp	p.R143W	ENST00000250003	NM_002478.4	143	Cgg/Tgg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741786	17741786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	235	643	1	ENST00000250003.3:c.457G>A	p.Ala153Thr	p.A153T	ENST00000250003	NM_002478.4	153	Gcc/Acc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741871	17741871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	65	239	0	ENST00000250003.3:c.542C>A	p.Pro181Gln	p.P181Q	ENST00000250003	NM_002478.4	181	cCg/cAg																																																																														
WT1	7490	MSKCC	GRCh37	11	32414215	32414215	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	128	434	0	ENST00000332351.3:c.1336A>G	p.Thr446Ala	p.T446A	ENST00000332351	NM_024426.4	446	Aca/Gca																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571865	64571865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	355	1171	0	ENST00000337652.1:c.1789G>A	p.Val597Met	p.V597M	ENST00000337652	NM_130803.2	597	Gtg/Atg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67198851	67198851	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373631670		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	37	420	1	ENST00000312629.5:c.322C>T	p.Arg108Cys	p.R108C	ENST00000312629	NM_003952.2	108	Cgc/Tgc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200498	67200498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	254	762	2	ENST00000312629.5:c.692G>A	p.Gly231Asp	p.G231D	ENST00000312629	NM_003952.2	231	gGc/gAc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202536	67202536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	221	918	0	ENST00000312629.5:c.1345C>A	p.Pro449Thr	p.P449T	ENST00000312629	NM_003952.2	449	Cca/Aca																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941889	71941889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	187	799	1	ENST00000298229.2:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000298229	NM_001567.3	416	tCc/tTc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942214	71942214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253875635		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	174	680	0	ENST00000298229.2:c.1478C>T	p.Thr493Met	p.T493M	ENST00000298229	NM_001567.3	493	aCg/aTg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94170382	94170382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	129	410	0	ENST00000323929.3:c.1887G>T	p.Gln629His	p.Q629H	ENST00000323929	NM_005591.3	629	caG/caT																																																																														
SESN3	143686	MSKCC	GRCh37	11	94906459	94906459	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	311	546	0	ENST00000536441.1:c.1439T>G	p.Leu480Arg	p.L480R	ENST00000536441	NM_144665.3	480	cTt/cGt																																																																														
YAP1	10413	MSKCC	GRCh37	11	102094365	102094365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770645607		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	131	432	0	ENST00000282441.5:c.1045C>T	p.Arg349Cys	p.R349C	ENST00000282441	NM_001130145.2	349	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108124585	108124585	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs141175037		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	108	410	0	ENST00000278616.4:c.1943T>C	p.Val648Ala	p.V648A	ENST00000278616	NM_000051.3	648	gTa/gCa																																																																														
ATM	472	MSKCC	GRCh37	11	108139169	108139169	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	179	746	0	ENST00000278616.4:c.2671T>C	p.Ser891Pro	p.S891P	ENST00000278616	NM_000051.3	891	Tca/Cca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360889	118360889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	206	486	0	ENST00000534358.1:c.4621C>A	p.Pro1541Thr	p.P1541T	ENST00000534358	NM_005933.3	1541	Cca/Aca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374070	118374070	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	142	446	0	ENST00000534358.1:c.7463A>G	p.Asp2488Gly	p.D2488G	ENST00000534358	NM_005933.3	2488	gAt/gGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118380686	118380686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	104	308	1	ENST00000534358.1:c.10924G>A	p.Glu3642Lys	p.E3642K	ENST00000534358	NM_005933.3	3642	Gaa/Aaa																																																																														
CBL	867	MSKCC	GRCh37	11	119167708	119167708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	226	611	0	ENST00000264033.4:c.2117G>T	p.Arg706Met	p.R706M	ENST00000264033	NM_005188.3	706	aGg/aTg																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125496671	125496671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	117	355	0	ENST00000428830.2:c.8T>C	p.Val3Ala	p.V3A	ENST00000428830	NM_001114121.2	3	gTg/gCg																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125499319	125499319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	139	580	0	ENST00000428830.2:c.388G>T	p.Asp130Tyr	p.D130Y	ENST00000428830	NM_001114121.2	130	Gat/Tat																																																																														
KDM5A	5927	MSKCC	GRCh37	12	417057	417057	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	166	496	0	ENST00000399788.2:c.3493A>T	p.Ile1165Phe	p.I1165F	ENST00000399788	NM_001042603.1	1165	Att/Ttt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	420129	420129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	209	530	1	ENST00000399788.2:c.3138G>T	p.Gln1046His	p.Q1046H	ENST00000399788	NM_001042603.1	1046	caG/caT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426478	49426478	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	415	1183	0	ENST00000301067.7:c.12010A>C	p.Lys4004Gln	p.K4004Q	ENST00000301067	NM_003482.3	4004	Aag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426871	49426871	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	175	574	0	ENST00000301067.7:c.11617C>A	p.Leu3873Met	p.L3873M	ENST00000301067	NM_003482.3	3873	Ctg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427217	49427217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	297	1051	0	ENST00000301067.7:c.11271G>T	p.Gln3757His	p.Q3757H	ENST00000301067	NM_003482.3	3757	caG/caT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432110	49432110	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764280781		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	271	960	0	ENST00000301067.7:c.9029C>T	p.Ala3010Val	p.A3010V	ENST00000301067	NM_003482.3	3010	gCt/gTt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56490602	56490602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	157	514	0	ENST00000267101.3:c.2246G>A	p.Gly749Glu	p.G749E	ENST00000267101	NM_001982.3	749	gGa/gAa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493738	56493738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	136	510	0	ENST00000267101.3:c.3054G>T	p.Glu1018Asp	p.E1018D	ENST00000267101	NM_001982.3	1018	gaG/gaT																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856124	111856124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1168055611		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	267	739	2	ENST00000341259.2:c.175C>T	p.Arg59Cys	p.R59C	ENST00000341259	NM_005475.2	59	Cgc/Tgc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856554	111856554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs953545115		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	158	453	0	ENST00000341259.2:c.605G>A	p.Arg202His	p.R202H	ENST00000341259	NM_005475.2	202	cGc/cAc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885299	111885299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200936167		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	153	656	0	ENST00000341259.2:c.1187C>T	p.Thr396Met	p.T396M	ENST00000341259	NM_005475.2	396	aCg/aTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112022	115112022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773504740		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	268	919	1	ENST00000257566.3:c.1718C>T	p.Ala573Val	p.A573V	ENST00000257566	NM_016569.3	573	gCg/gTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112472	115112472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145432134		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	280	899	0	ENST00000257566.3:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000257566	NM_016569.3	423	cGg/cAg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120535095	120535095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	266	752	0	ENST00000229340.5:c.560T>C	p.Val187Ala	p.V187A	ENST00000229340	NM_006861.6	187	gTg/gCg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536617	120536617	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	157	750	0	ENST00000229340.5:c.475G>T	p.Glu159Ter	p.E159*	ENST00000229340	NM_006861.6	159	Gag/Tag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434086	121434086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369764257		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	213	594	2	ENST00000257555.6:c.977C>T	p.Ala326Val	p.A326V	ENST00000257555		326	gCg/gTg																																																																														
SETD8	0	MSKCC	GRCh37	12	123892066	123892066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	130	417	0	ENST00000330479.4:c.875G>A	p.Arg292His	p.R292H	ENST00000330479	NM_020382.3	292	cGc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133214670	133214670	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138231414		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	213	602	1	ENST00000320574.5:c.5608C>T	p.Arg1870Cys	p.R1870C	ENST00000320574	NM_006231.2	1870	Cgc/Tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133252020	133252020	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs761203384		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	265	842	1	ENST00000320574.5:c.1190A>G	p.Tyr397Cys	p.Y397C	ENST00000320574	NM_006231.2	397	tAc/tGc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21619889	21619889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	165	572	0	ENST00000382592.4:c.277A>G	p.Thr93Ala	p.T93A	ENST00000382592	NM_014572.2	93	Acc/Gcc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28597571	28597571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	242	748	0	ENST00000241453.7:c.2334G>T	p.Glu778Asp	p.E778D	ENST00000241453	NM_004119.2	778	gaG/gaT																																																																														
FLT3	2322	MSKCC	GRCh37	13	28602352	28602352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	204	600	0	ENST00000241453.7:c.2016G>T	p.Glu672Asp	p.E672D	ENST00000241453	NM_004119.2	672	gaG/gaT																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877404	28877404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	203	482	0	ENST00000282397.4:c.3917G>T	p.Arg1306Met	p.R1306M	ENST00000282397	NM_002019.4	1306	aGg/aTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28903839	28903839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	149	695	0	ENST00000282397.4:c.2620G>T	p.Ala874Ser	p.A874S	ENST00000282397	NM_002019.4	874	Gct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912163	32912163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	206	818	5	ENST00000380152.3:c.3671G>A	p.Gly1224Asp	p.G1224D	ENST00000380152		1224	gGc/gAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913269	32913269	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	149	518	2	ENST00000380152.3:c.4777G>T	p.Glu1593Ter	p.E1593*	ENST00000380152		1593	Gaa/Taa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514009	103514009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	89	447	0	ENST00000355739.4:c.825G>T	p.Glu275Asp	p.E275D	ENST00000355739	NM_000123.3	275	gaG/gaT																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514877	103514877	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	91	306	0	ENST00000355739.4:c.1378A>C	p.Ser460Arg	p.S460R	ENST00000355739	NM_000123.3	460	Agc/Cgc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435294	110435294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	171	448	0	ENST00000375856.3:c.3107C>T	p.Pro1036Leu	p.P1036L	ENST00000375856	NM_003749.2	1036	cCg/cTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560445	95560445	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	117	557	0	ENST00000343455.3:c.5144T>C	p.Leu1715Pro	p.L1715P	ENST00000343455	NM_177438.2	1715	cTc/cCc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95563031	95563031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776416084		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	45	333	0	ENST00000343455.3:c.4226C>T	p.Ala1409Val	p.A1409V	ENST00000343455	NM_177438.2	1409	gCg/gTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95593084	95593084	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	133	412	0	ENST00000343455.3:c.736T>C	p.Tyr246His	p.Y246H	ENST00000343455	NM_177438.2	246	Tat/Cat																																																																														
MGA	23269	MSKCC	GRCh37	15	42028624	42028624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1274154364		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	207	709	1	ENST00000219905.7:c.4162C>T	p.Pro1388Ser	p.P1388S	ENST00000219905	NM_001164273.1	1388	Cct/Tct																																																																														
MGA	23269	MSKCC	GRCh37	15	42028686	42028686	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	164	677	0	ENST00000219905.7:c.4224G>C	p.Met1408Ile	p.M1408I	ENST00000219905	NM_001164273.1	1408	atG/atC																																																																														
MGA	23269	MSKCC	GRCh37	15	42041065	42041065	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1202147554		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	261	794	0	ENST00000219905.7:c.5443C>T	p.His1815Tyr	p.H1815Y	ENST00000219905	NM_001164273.1	1815	Cat/Tat																																																																														
MGA	23269	MSKCC	GRCh37	15	42054471	42054471	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs769432234		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	104	436	0	ENST00000219905.7:c.7655C>A	p.Ser2552Tyr	p.S2552Y	ENST00000219905	NM_001164273.1	2552	tCt/tAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701285	43701285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	47	444	0	ENST00000382044.4:c.5410G>A	p.Ala1804Thr	p.A1804T	ENST00000382044	NM_001141980.1	1804	Gct/Act																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714135	43714135	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200761797		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	319	974	1	ENST00000382044.4:c.4018G>A	p.Gly1340Arg	p.G1340R	ENST00000382044	NM_001141980.1	1340	Gga/Aga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43772162	43772162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	259	814	0	ENST00000382044.4:c.553G>A	p.Asp185Asn	p.D185N	ENST00000382044	NM_001141980.1	185	Gat/Aat																																																																														
B2M	567	MSKCC	GRCh37	15	45007735	45007735	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	131	465	0	ENST00000558401.1:c.182A>C	p.Lys61Thr	p.K61T	ENST00000558401	NM_004048.2	61	aAg/aCg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477127	67477127	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750756638		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	253	722	0	ENST00000327367.4:c.934G>A	p.Ala312Thr	p.A312T	ENST00000327367	NM_005902.3	312	Gct/Act																																																																														
CD276	80381	MSKCC	GRCh37	15	73996221	73996221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	166	533	1	ENST00000318443.5:c.955G>A	p.Ala319Thr	p.A319T	ENST00000318443	NM_001024736.1	319	Gca/Aca																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456466	99456466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764375938		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	57	450	1	ENST00000268035.6:c.1783C>T	p.Arg595Cys	p.R595C	ENST00000268035	NM_000875.3	595	Cgt/Tgt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467887	99467887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	122	343	0	ENST00000268035.6:c.2756C>A	p.Pro919His	p.P919H	ENST00000268035	NM_000875.3	919	cCt/cAt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478122	99478122	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1470161328		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	185	509	1	ENST00000268035.6:c.3026C>T	p.Ser1009Leu	p.S1009L	ENST00000268035	NM_000875.3	1009	tCg/tTg																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2094737	2094737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750992242		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	272	1040	1	ENST00000219066.1:c.443C>T	p.Ala148Val	p.A148V	ENST00000219066	NM_002528.5	148	gCg/gTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2104399	2104399	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	291	839	0	ENST00000219476.3:c.439A>G	p.Thr147Ala	p.T147A	ENST00000219476	NM_000548.3	147	Aca/Gca																																																																														
TSC2	7249	MSKCC	GRCh37	16	2105422	2105422	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	253	753	0	ENST00000219476.3:c.501G>A	p.Trp167Ter	p.W167*	ENST00000219476	NM_000548.3	167	tgG/tgA																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136747	2136747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769913589		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	281	878	0	ENST00000219476.3:c.4864G>A	p.Ala1622Thr	p.A1622T	ENST00000219476	NM_000548.3	1622	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779671	3779671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	147	913	1	ENST00000262367.5:c.5377C>T	p.Pro1793Ser	p.P1793S	ENST00000262367	NM_004380.2	1793	Cca/Tca																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781324	3781324	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	308	1047	0	ENST00000262367.5:c.5041T>G	p.Leu1681Val	p.L1681V	ENST00000262367	NM_004380.2	1681	Ttg/Gtg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789672	3789672	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	135	502	0	ENST00000262367.5:c.4187T>G	p.Leu1396Arg	p.L1396R	ENST00000262367	NM_004380.2	1396	cTg/cGg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807853	3807853	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	115	505	0	ENST00000262367.5:c.3566T>A	p.Ile1189Asn	p.I1189N	ENST00000262367	NM_004380.2	1189	aTt/aAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843396	3843396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	140	425	0	ENST00000262367.5:c.1207G>A	p.Ala403Thr	p.A403T	ENST00000262367	NM_004380.2	403	Gcc/Acc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041900	14041900	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	23	404	0	ENST00000311895.7:c.2447T>C	p.Leu816Pro	p.L816P	ENST00000311895	NM_005236.2	816	cTg/cCg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641347	23641347	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs730881887		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	221	878	0	ENST00000261584.4:c.2128A>G	p.Thr710Ala	p.T710A	ENST00000261584	NM_024675.3	710	Acg/Gcg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646401	23646401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	246	729	0	ENST00000261584.4:c.1466C>T	p.Ser489Phe	p.S489F	ENST00000261584	NM_024675.3	489	tCt/tTt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50810134	50810134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	143	489	0	ENST00000398568.2:c.958T>C	p.Ser320Pro	p.S320P	ENST00000398568	NM_001042412.1	320	Tca/Cca																																																																														
CYLD	1540	MSKCC	GRCh37	16	50811834	50811834	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	135	473	0	ENST00000398568.2:c.1111A>G	p.Thr371Ala	p.T371A	ENST00000398568	NM_001042412.1	371	Aca/Gca																																																																														
NUP93	9688	MSKCC	GRCh37	16	56792506	56792506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	201	568	0	ENST00000308159.5:c.236A>G	p.Glu79Gly	p.E79G	ENST00000308159	NM_014669.4	79	gAg/gGg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645132	67645132	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	214	658	1	ENST00000264010.4:c.397G>T	p.Glu133Ter	p.E133*	ENST00000264010	NM_006565.3	133	Gaa/Taa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67670686	67670686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	148	549	1	ENST00000264010.4:c.1931C>T	p.Ala644Val	p.A644V	ENST00000264010	NM_006565.3	644	gCc/gTc																																																																														
CDH1	999	MSKCC	GRCh37	16	68835755	68835755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	39	634	0	ENST00000261769.5:c.346C>A	p.Leu116Met	p.L116M	ENST00000261769	NM_004360.3	116	Ctg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821590	72821590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	48	195	0	ENST00000268489.5:c.10585T>C	p.Tyr3529His	p.Y3529H	ENST00000268489	NM_006885.3	3529	Tac/Cac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830568	72830568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368676441		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	105	757	1	ENST00000268489.5:c.6013G>A	p.Val2005Ile	p.V2005I	ENST00000268489	NM_006885.3	2005	Gtt/Att																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830682	72830682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	209	762	0	ENST00000268489.5:c.5899G>A	p.Val1967Met	p.V1967M	ENST00000268489	NM_006885.3	1967	Gtg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830919	72830919	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	193	582	1	ENST00000268489.5:c.5662G>T	p.Glu1888Ter	p.E1888*	ENST00000268489	NM_006885.3	1888	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993974	72993974	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	254	894	1	ENST00000268489.5:c.71G>A	p.Trp24Ter	p.W24*	ENST00000268489	NM_006885.3	24	tGg/tAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965233	81965233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	183	585	0	ENST00000359376.3:c.2713G>A	p.Glu905Lys	p.E905K	ENST00000359376	NM_002661.3	905	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341577	89341577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1052222126		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	119	524	0	ENST00000301030.4:c.7493C>T	p.Ala2498Val	p.A2498V	ENST00000301030	NM_001256183.1	2498	gCg/gTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346973	89346973	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773403872		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	87	386	0	ENST00000301030.4:c.5977C>T	p.Arg1993Cys	p.R1993C	ENST00000301030	NM_001256183.1	1993	Cgt/Tgt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347764	89347764	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1353936075		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	149	663	0	ENST00000301030.4:c.5186C>T	p.Ala1729Val	p.A1729V	ENST00000301030	NM_001256183.1	1729	gCc/gTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349681	89349681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	81	1066	0	ENST00000301030.4:c.3269C>A	p.Ala1090Asp	p.A1090D	ENST00000301030	NM_001256183.1	1090	gCt/gAt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838214	89838214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	124	550	0	ENST00000389301.3:c.2023G>A	p.Ala675Thr	p.A675T	ENST00000389301	NM_000135.2	675	Gca/Aca																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984220	7984220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	125	616	0	ENST00000319144.4:c.509G>A	p.Arg170His	p.R170H	ENST00000319144	NM_001139.2	170	cGc/cAc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12044572	12044572	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1177038824		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	149	563	0	ENST00000353533.5:c.1195G>A	p.Asp399Asn	p.D399N	ENST00000353533	NM_003010.3	399	Gat/Aat																																																																														
NF1	4763	MSKCC	GRCh37	17	29483145	29483145	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs886039548		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	119	433	1	ENST00000358273.4:c.204+1G>T		p.X68_splice	ENST00000358273	NM_001042492.2	68																																																																															
NF1	4763	MSKCC	GRCh37	17	29528504	29528504	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs267606603		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	93	508	0	ENST00000358273.4:c.1260+1G>A		p.X420_splice	ENST00000358273	NM_001042492.2	420																																																																															
NF1	4763	MSKCC	GRCh37	17	29562776	29562776	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	138	529	0	ENST00000358273.4:c.3856A>C	p.Thr1286Pro	p.T1286P	ENST00000358273	NM_001042492.2	1286	Aca/Cca																																																																														
NF1	4763	MSKCC	GRCh37	17	29664840	29664840	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	23	442	0	ENST00000358273.4:c.6646T>C	p.Cys2216Arg	p.C2216R	ENST00000358273	NM_001042492.2	2216	Tgc/Cgc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325796	30325796	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	81	328	0	ENST00000322652.5:c.1994A>T	p.Asp665Val	p.D665V	ENST00000322652	NM_015355.2	665	gAc/gTc																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428041	33428041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	32	624	0	ENST00000335858.7:c.582G>T	p.Gln194His	p.Q194H	ENST00000335858	NM_133629.2	194	caG/caT																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627771	37627771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	285	733	0	ENST00000447079.4:c.1686G>T	p.Gln562His	p.Q562H	ENST00000447079	NM_015083.1	562	caG/caT																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37865670	37865670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	76	616	0	ENST00000269571.5:c.539C>T	p.Ala180Val	p.A180V	ENST00000269571		180	gCt/gTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881124	37881124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	235	857	1	ENST00000269571.5:c.2453G>A	p.Gly818Asp	p.G818D	ENST00000269571		818	gGc/gAc																																																																														
RARA	5914	MSKCC	GRCh37	17	38508695	38508695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200827868		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	145	803	0	ENST00000254066.5:c.743G>A	p.Gly248Asp	p.G248D	ENST00000254066	NM_000964.3	248	gGc/gAc																																																																														
RARA	5914	MSKCC	GRCh37	17	38508713	38508713	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	225	723	0	ENST00000254066.5:c.761T>C	p.Ile254Thr	p.I254T	ENST00000254066	NM_000964.3	254	aTc/aCc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40865388	40865388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	215	856	0	ENST00000428826.2:c.1043C>G	p.Ala348Gly	p.A348G	ENST00000428826		348	gCc/gGc																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805827	46805827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	152	586	1	ENST00000290295.7:c.129G>A	p.Met43Ile	p.M43I	ENST00000290295	NM_006361.5	43	atG/atA																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696719	47696719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	139	492	1	ENST00000347630.2:c.229G>T	p.Asp77Tyr	p.D77Y	ENST00000347630	NM_001007230.1	77	Gat/Tat																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696725	47696725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	82	458	0	ENST00000347630.2:c.223G>T	p.Gly75Trp	p.G75W	ENST00000347630	NM_001007230.1	75	Ggg/Tgg																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752363	55752363	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745388891		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	58	970	2	ENST00000284073.2:c.821C>T	p.Pro274Leu	p.P274L	ENST00000284073	NM_138962.2	274	cCg/cTg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763214	59763214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	196	671	0	ENST00000259008.2:c.2888T>C	p.Ile963Thr	p.I963T	ENST00000259008	NM_032043.2	963	aTc/aCc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59924575	59924575	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	109	359	0	ENST00000259008.2:c.514A>C	p.Lys172Gln	p.K172Q	ENST00000259008	NM_032043.2	172	Aaa/Caa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554433	63554433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	207	683	0	ENST00000307078.5:c.306G>T	p.Glu102Asp	p.E102D	ENST00000307078	NM_004655.3	102	gaG/gaT																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66525064	66525064	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	132	459	0	ENST00000358598.2:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000358598	NM_212471.2	275	Cag/Tag																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39595526	39595526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	59	243	0	ENST00000262039.4:c.1412T>C	p.Leu471Pro	p.L471P	ENST00000262039	NM_002647.2	471	cTg/cCg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45377680	45377680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	36	217	0	ENST00000262160.6:c.749C>A	p.Ser250Tyr	p.S250Y	ENST00000262160	NM_005901.5	250	tCt/tAt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45391492	45391492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	78	378	0	ENST00000262160.6:c.668C>A	p.Pro223His	p.P223H	ENST00000262160	NM_005901.5	223	cCt/cAt																																																																														
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	48	895	0	ENST00000326873.7:c.388G>A	p.Glu130Lys	p.E130K	ENST00000326873	NM_000455.4	130	Gag/Aag																																																																														
TCF3	6929	MSKCC	GRCh37	19	1650223	1650223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	274	904	0	ENST00000344749.5:c.25C>T	p.Pro9Ser	p.P9S	ENST00000344749	NM_001136139.2	9	Cct/Tct																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2221981	2221981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	76	749	0	ENST00000398665.3:c.2813C>T	p.Ser938Phe	p.S938F	ENST00000398665	NM_032482.2	938	tCc/tTc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3113446	3113446	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1035292287		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	246	716	1	ENST00000078429.4:c.440G>A	p.Arg147His	p.R147H	ENST00000078429	NM_002067.2	147	cGc/cAc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4090612	4090612	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117945277		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	209	676	1	ENST00000262948.5:c.1187C>T	p.Thr396Met	p.T396M	ENST00000262948	NM_030662.3	396	aCg/aTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214595	5214595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	223	807	0	ENST00000357368.4:c.4471A>G	p.Thr1491Ala	p.T1491A	ENST00000357368	NM_002850.3	1491	Acg/Gcg																																																																														
INSR	3643	MSKCC	GRCh37	19	7122941	7122941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	290	973	1	ENST00000302850.5:c.3318G>A	p.Met1106Ile	p.M1106I	ENST00000302850	NM_000208.2	1106	atG/atA																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247767	10247767	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781301028		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	257	827	0	ENST00000340748.4:c.4435G>A	p.Val1479Met	p.V1479M	ENST00000340748		1479	Gtg/Atg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602296	10602296	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs934945819		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	252	920	2	ENST00000171111.5:c.1282G>A	p.Val428Ile	p.V428I	ENST00000171111	NM_203500.1	428	Gtc/Atc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296128	15296128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1481559244		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	303	991	0	ENST00000263388.2:c.2236G>A	p.Gly746Ser	p.G746S	ENST00000263388	NM_000435.2	746	Ggt/Agt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302292	15302292	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs767905805		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	289	1000	0	ENST00000263388.2:c.979G>T	p.Ala327Ser	p.A327S	ENST00000263388	NM_000435.2	327	Gcc/Tcc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271331	18271331	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753702580		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	248	865	1	ENST00000222254.8:c.373C>T	p.Pro125Ser	p.P125S	ENST00000222254	NM_005027.3	125	Ccc/Tcc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271740	18271740	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561325993		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	276	906	0	ENST00000222254.8:c.427G>A	p.Glu143Lys	p.E143K	ENST00000222254	NM_005027.3	143	Gaa/Aaa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968220	18968220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	224	776	0	ENST00000262803.5:c.2060G>A	p.Arg687His	p.R687H	ENST00000262803	NM_002911.3	687	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212451	36212451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	175	920	1	ENST00000222270.7:c.2202G>T	p.Gln734His	p.Q734H	ENST00000222270	NM_014727.1	734	caG/caT																																																																														
AXL	558	MSKCC	GRCh37	19	41759588	41759588	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769826822		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	226	771	0	ENST00000301178.4:c.2011C>T	p.Arg671Trp	p.R671W	ENST00000301178	NM_021913.4	671	Cgg/Tgg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753650	42753650	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1053655		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	200	870	1	ENST00000222329.4:c.614G>A	p.Arg205His	p.R205H	ENST00000222329	NM_006494.2	205	cGc/cAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42796472	42796472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367725186		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	271	1044	7	ENST00000575354.2:c.3029C>T	p.Ala1010Val	p.A1010V	ENST00000575354	NM_015125.3	1010	gCg/gTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42799213	42799213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	193	786	0	ENST00000575354.2:c.4697C>A	p.Ser1566Tyr	p.S1566Y	ENST00000575354	NM_015125.3	1566	tCt/tAt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855762	45855762	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	44	635	0	ENST00000391945.4:c.2046+2T>C		p.X682_splice	ENST00000391945	NM_000400.3	682																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45856347	45856347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	228	804	0	ENST00000391945.4:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000391945	NM_000400.3	609	Gac/Aac																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868350	45868350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765679315		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	345	981	0	ENST00000391945.4:c.427C>T	p.Arg143Trp	p.R143W	ENST00000391945	NM_000400.3	143	Cgg/Tgg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905282	50905282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	56	1109	0	ENST00000440232.2:c.490C>A	p.Leu164Met	p.L164M	ENST00000440232	NM_002691.3	164	Ctg/Atg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505435	25505435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	54	735	0	ENST00000264709.3:c.323G>A	p.Gly108Glu	p.G108E	ENST00000264709	NM_175629.2	108	gGg/gAg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25973194	25973194	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	134	552	1	ENST00000435504.4:c.1231T>C	p.Ser411Pro	p.S411P	ENST00000435504		411	Tcc/Ccc																																																																														
ALK	238	MSKCC	GRCh37	2	29416458	29416458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	245	997	1	ENST00000389048.3:c.4495C>T	p.Pro1499Ser	p.P1499S	ENST00000389048	NM_004304.4	1499	Ccc/Tcc																																																																														
ALK	238	MSKCC	GRCh37	2	29448336	29448336	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	331	1150	0	ENST00000389048.3:c.3163A>G	p.Ile1055Val	p.I1055V	ENST00000389048	NM_004304.4	1055	Atc/Gtc																																																																														
ALK	238	MSKCC	GRCh37	2	29451780	29451780	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	225	736	0	ENST00000389048.3:c.2785T>A	p.Ser929Thr	p.S929T	ENST00000389048	NM_004304.4	929	Tcc/Acc																																																																														
ALK	238	MSKCC	GRCh37	2	29455216	29455216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	172	737	1	ENST00000389048.3:c.2586G>T	p.Glu862Asp	p.E862D	ENST00000389048	NM_004304.4	862	gaG/gaT																																																																														
ALK	238	MSKCC	GRCh37	2	29754809	29754809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	175	546	0	ENST00000389048.3:c.1126C>A	p.Leu376Ile	p.L376I	ENST00000389048	NM_004304.4	376	Ctc/Atc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46588190	46588190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148453283		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	193	639	0	ENST00000263734.3:c.740G>A	p.Arg247His	p.R247H	ENST00000263734	NM_001430.4	247	cGc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027095	48027095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	156	461	0	ENST00000234420.5:c.1973T>C	p.Val658Ala	p.V658A	ENST00000234420	NM_000179.2	658	gTg/gCg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61711089	61711089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	122	447	0	ENST00000401558.2:c.2660G>T	p.Arg887Met	p.R887M	ENST00000401558	NM_003400.3	887	aGg/aTg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634786	158634786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765195676		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	91	373	0	ENST00000263640.3:c.400G>A	p.Ala134Thr	p.A134T	ENST00000263640	NM_001105.4	134	Gca/Aca																																																																														
CASP8	841	MSKCC	GRCh37	2	202149771	202149771	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	141	725	1	ENST00000358485.4:c.1212C>A	p.Cys404Ter	p.C404*	ENST00000358485	NM_001080125.1	404	tgC/tgA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285245	212285245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	108	591	0	ENST00000342788.4:c.3056C>T	p.Ala1019Val	p.A1019V	ENST00000342788	NM_005235.2	1019	gCt/gTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286748	212286748	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1239361918		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	75	407	0	ENST00000342788.4:c.2948G>T	p.Arg983Ile	p.R983I	ENST00000342788	NM_005235.2	983	aGa/aTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812158	212812158	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	86	299	0	ENST00000342788.4:c.418A>T	p.Thr140Ser	p.T140S	ENST00000342788	NM_005235.2	140	Aca/Tca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	213403235	213403235	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	164	492	0	ENST00000342788.4:c.20T>G	p.Leu7Arg	p.L7R	ENST00000342788	NM_005235.2	7	cTt/cGt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225339063	225339063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	118	434	0	ENST00000264414.4:c.2206C>T	p.Pro736Ser	p.P736S	ENST00000264414	NM_003590.4	736	Cca/Tca																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661501	227661501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780995783		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	224	871	0	ENST00000305123.5:c.1954C>T	p.Arg652Cys	p.R652C	ENST00000305123	NM_005544.2	652	Cgc/Tgc																																																																														
PAK7	0	MSKCC	GRCh37	20	9538301	9538301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	58	594	1	ENST00000353224.5:c.1697A>G	p.His566Arg	p.H566R	ENST00000353224	NM_177990.2	566	cAc/cGc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31020766	31020766	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	79	234	0	ENST00000375687.4:c.1063T>G	p.Phe355Val	p.F355V	ENST00000375687	NM_015338.5	355	Ttt/Gtt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022696	31022696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	35	640	0	ENST00000375687.4:c.2181G>T	p.Glu727Asp	p.E727D	ENST00000375687	NM_015338.5	727	gaG/gaT																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375127	31375127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	206	861	0	ENST00000328111.2:c.524A>G	p.Glu175Gly	p.E175G	ENST00000328111	NM_006892.3	175	gAg/gGg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31388084	31388084	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	96	361	0	ENST00000328111.2:c.1885A>G	p.Arg629Gly	p.R629G	ENST00000328111	NM_006892.3	629	Agg/Ggg																																																																														
SRC	6714	MSKCC	GRCh37	20	36024652	36024652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	280	955	1	ENST00000358208.4:c.641G>A	p.Gly214Asp	p.G214D	ENST00000358208		214	gGc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980785	40980785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	160	643	0	ENST00000373198.4:c.1701G>T	p.Lys567Asn	p.K567N	ENST00000373198	NM_133170.3	567	aaG/aaT																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485852	57485852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	148	443	1	ENST00000371085.3:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000371085	NM_000516.4	385	Cgc/Tgc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42842589	42842589	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758880900		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	261	789	0	ENST00000398585.3:c.1268C>T	p.Ala423Val	p.A423V	ENST00000398585	NM_001135099.1	423	gCc/gTc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37061940	37061940	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	138	427	0	ENST00000231790.2:c.1024A>G	p.Met342Val	p.M342V	ENST00000231790	NM_000249.3	342	Atg/Gtg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52662965	52662965	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	152	586	0	ENST00000394830.3:c.1388A>T	p.Asn463Ile	p.N463I	ENST00000394830	NM_018313.4	463	aAt/aTt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026807	71026807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	86	285	0	ENST00000318789.4:c.1415C>A	p.Ser472Tyr	p.S472Y	ENST00000318789	NM_032682.5	472	tCt/tAt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71102787	71102787	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	98	310	0	ENST00000318789.4:c.420G>T	p.Gln140His	p.Q140H	ENST00000318789	NM_032682.5	140	caG/caT																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799437	72799437	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	198	690	0	ENST00000325599.8:c.1732T>C	p.Ter578ArgextTer9	p.*578Rext*9	ENST00000325599	NM_018130.2	578	Tga/Cga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259409	89259409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	167	693	0	ENST00000336596.2:c.553G>A	p.Asp185Asn	p.D185N	ENST00000336596	NM_005233.5	185	Gat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448552	89448552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	147	589	0	ENST00000336596.2:c.1516G>A	p.Val506Ile	p.V506I	ENST00000336596	NM_005233.5	506	Gta/Ata																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462381	89462381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	151	590	0	ENST00000336596.2:c.1853C>T	p.Ala618Val	p.A618V	ENST00000336596	NM_005233.5	618	gCc/gTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499516	89499516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773476878		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	94	372	2	ENST00000336596.2:c.2686G>A	p.Ala896Thr	p.A896T	ENST00000336596	NM_005233.5	896	Gca/Aca																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119666149	119666149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762056483		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	105	449	0	ENST00000316626.5:c.332G>A	p.Arg111Gln	p.R111Q	ENST00000316626		111	cGa/cAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880987	134880987	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	196	586	0	ENST00000398015.3:c.1550T>C	p.Phe517Ser	p.F517S	ENST00000398015	NM_004441.4	517	tTc/tCc																																																																														
ATR	545	MSKCC	GRCh37	3	142188177	142188177	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	72	304	0	ENST00000350721.4:c.6552+2T>C		p.X2184_splice	ENST00000350721	NM_001184.3	2184																																																																															
ATR	545	MSKCC	GRCh37	3	142224008	142224008	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	221	759	0	ENST00000350721.4:c.5169C>G	p.Asp1723Glu	p.D1723E	ENST00000350721	NM_001184.3	1723	gaC/gaG																																																																														
ATR	545	MSKCC	GRCh37	3	142224078	142224078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	168	649	0	ENST00000350721.4:c.5099C>T	p.Pro1700Leu	p.P1700L	ENST00000350721	NM_001184.3	1700	cCa/cTa																																																																														
ATR	545	MSKCC	GRCh37	3	142285004	142285004	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	167	520	0	ENST00000350721.4:c.251T>C	p.Val84Ala	p.V84A	ENST00000350721	NM_001184.3	84	gTa/gCa																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182662949	182662949	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	151	506	0	ENST00000292782.4:c.713T>C	p.Val238Ala	p.V238A	ENST00000292782	NM_020640.2	238	gTt/gCt																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665381	182665381	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	58	231	0	ENST00000292782.4:c.560A>T	p.Asn187Ile	p.N187I	ENST00000292782	NM_020640.2	187	aAt/aTt																																																																														
BCL6	604	MSKCC	GRCh37	3	187443331	187443331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	142	433	1	ENST00000232014.4:c.1795G>A	p.Glu599Lys	p.E599K	ENST00000232014	NM_001130845.1	599	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806222	1806222	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	243	835	0	ENST00000260795.2:c.1241T>G	p.Ile414Ser	p.I414S	ENST00000260795		414	aTc/aGc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1918616	1918616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	145	402	0	ENST00000382895.3:c.779G>A	p.Arg260His	p.R260H	ENST00000382895	NM_133330.2	260	cGc/cAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133763	55133763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	159	535	0	ENST00000257290.5:c.976G>A	p.Ala326Thr	p.A326T	ENST00000257290	NM_006206.4	326	Gct/Act																																																																														
KIT	3815	MSKCC	GRCh37	4	55564654	55564654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	235	650	0	ENST00000288135.5:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000288135	NM_000222.2	181	cGg/cAg																																																																														
KIT	3815	MSKCC	GRCh37	4	55594204	55594204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	104	511	0	ENST00000288135.5:c.1907C>T	p.Ala636Val	p.A636V	ENST00000288135	NM_000222.2	636	gCc/gTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55604629	55604629	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779103998		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	205	573	0	ENST00000288135.5:c.2837G>A	p.Arg946Gln	p.R946Q	ENST00000288135	NM_000222.2	946	cGa/cAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968171	55968171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	121	484	0	ENST00000263923.4:c.2159G>T	p.Arg720Leu	p.R720L	ENST00000263923	NM_002253.2	720	cGg/cTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55970915	55970915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	152	694	0	ENST00000263923.4:c.1882G>A	p.Glu628Lys	p.E628K	ENST00000263923	NM_002253.2	628	Gag/Aag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356262	66356262	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs769625548		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	209	663	0	ENST00000273854.3:c.1235T>C	p.Val412Ala	p.V412A	ENST00000273854	NM_004439.5	412	gTc/gCc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467401	66467401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	76	345	0	ENST00000273854.3:c.868A>G	p.Met290Val	p.M290V	ENST00000273854	NM_004439.5	290	Atg/Gtg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143324126	143324126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	18	346	0	ENST00000262992.4:c.337A>G	p.Thr113Ala	p.T113A	ENST00000262992	NM_001101669.1	113	Aca/Gca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518308	187518308	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	57	277	0	ENST00000441802.2:c.12386A>G	p.Asp4129Gly	p.D4129G	ENST00000441802	NM_005245.3	4129	gAc/gGc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539108	187539108	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	165	719	0	ENST00000441802.2:c.8632G>T	p.Glu2878Ter	p.E2878*	ENST00000441802	NM_005245.3	2878	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542393	187542393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs572509773		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	120	454	0	ENST00000441802.2:c.5347G>A	p.Val1783Met	p.V1783M	ENST00000441802	NM_005245.3	1783	Gtg/Atg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542456	187542456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371394820		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	122	527	0	ENST00000441802.2:c.5284G>A	p.Ala1762Thr	p.A1762T	ENST00000441802	NM_005245.3	1762	Gcg/Acg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629663	187629663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	67	807	1	ENST00000441802.2:c.1319C>T	p.Thr440Ile	p.T440I	ENST00000441802	NM_005245.3	440	aCa/aTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1266595	1266595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	189	502	0	ENST00000310581.5:c.2638G>A	p.Ala880Thr	p.A880T	ENST00000310581	NM_198253.2	880	Gcg/Acg																																																																														
TERT	7015	MSKCC	GRCh37	5	1294307	1294307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	238	956	1	ENST00000310581.5:c.694C>A	p.Leu232Met	p.L232M	ENST00000310581	NM_198253.2	232	Ctg/Atg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31407011	31407011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	177	715	0	ENST00000344624.3:c.3896C>A	p.Thr1299Asn	p.T1299N	ENST00000344624		1299	aCt/aAt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31521307	31521307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	205	620	0	ENST00000344624.3:c.870G>T	p.Glu290Asp	p.E290D	ENST00000344624		290	gaG/gaT																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38967462	38967462	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	100	363	0	ENST00000357387.3:c.1128T>G	p.Ile376Met	p.I376M	ENST00000357387	NM_152756.3	376	atT/atG																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39002764	39002764	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748219571		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	55	340	0	ENST00000357387.3:c.265C>T	p.Arg89Trp	p.R89W	ENST00000357387	NM_152756.3	89	Cgg/Tgg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56176927	56176927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	45	359	0	ENST00000399503.3:c.2197G>A	p.Gly733Ser	p.G733S	ENST00000399503	NM_005921.1	733	Ggt/Agt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753133	57753133	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749015923		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	109	452	0	ENST00000274289.3:c.883G>A	p.Ala295Thr	p.A295T	ENST00000274289	NM_006622.3	295	Gca/Aca																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589547	67589547	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	46	163	0	ENST00000274335.5:c.1310T>A	p.Val437Asp	p.V437D	ENST00000274335		437	gTc/gAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591317	67591317	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	77	306	0	ENST00000274335.5:c.1814+1G>C		p.X605_splice	ENST00000274335		605																																																																															
MSH3	4437	MSKCC	GRCh37	5	79961106	79961106	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	194	686	0	ENST00000265081.6:c.503A>C	p.Asp168Ala	p.D168A	ENST00000265081	NM_002439.4	168	gAt/gCt																																																																														
MSH3	4437	MSKCC	GRCh37	5	80150098	80150098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	154	619	0	ENST00000265081.6:c.2963C>T	p.Ala988Val	p.A988V	ENST00000265081	NM_002439.4	988	gCc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112178943	112178943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	93	364	1	ENST00000257430.4:c.7652A>G	p.His2551Arg	p.H2551R	ENST00000257430	NM_000038.5	2551	cAc/cGc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915178	131915179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1200826209		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	150	616	0	ENST00000265335.6:c.541dup	p.Ser181PhefsTer7	p.S181Ffs*7	ENST00000265335		179	att/aTtt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131951715	131951715	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	53	243	0	ENST00000265335.6:c.3057A>C	p.Gln1019His	p.Q1019H	ENST00000265335		1019	caA/caC																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636821	176636821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	146	540	1	ENST00000439151.2:c.1421G>A	p.Gly474Asp	p.G474D	ENST00000439151	NM_022455.4	474	gGc/gAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637225	176637225	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771243523		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	70	743	0	ENST00000439151.2:c.1825C>T	p.Pro609Ser	p.P609S	ENST00000439151	NM_022455.4	609	Ccc/Tcc																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858506	27858506	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1311110530		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	119	432	0	ENST00000359303.2:c.65C>T	p.Ala22Val	p.A22V	ENST00000359303	NM_003535.2	22	gCc/gTc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912379	29912379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	117	713	1	ENST00000376809.5:c.998G>T	p.Arg333Met	p.R333M	ENST00000376809	NM_002116.7	333	aGg/aTg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805712	32805712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760254380		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	205	772	0	ENST00000374899.4:c.299G>A	p.Ser100Asn	p.S100N	ENST00000374899	NM_018833.2	100	aGc/aAc																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793708	89793709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	68	387	0	ENST00000336032.3:c.782dup	p.Asn261LysfsTer12	p.N261Kfs*12	ENST00000336032	NM_006813.2	259	-/A																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974412	93974412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	83	331	0	ENST00000369303.4:c.1642G>A	p.Val548Ile	p.V548I	ENST00000369303	NM_004440.3	548	Gtc/Atc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068129	94068129	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	76	200	0	ENST00000369303.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000369303	NM_004440.3	278	cCc/cTc																																																																														
FYN	2534	MSKCC	GRCh37	6	112025235	112025235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	203	604	0	ENST00000368678.4:c.514A>G	p.Thr172Ala	p.T172A	ENST00000368678		172	Acc/Gcc																																																																														
FYN	2534	MSKCC	GRCh37	6	112029204	112029204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	99	389	0	ENST00000368678.4:c.364G>A	p.Ala122Thr	p.A122T	ENST00000368678		122	Gcc/Acc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641081	117641081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766115237		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	187	682	1	ENST00000368508.3:c.5890G>A	p.Ala1964Thr	p.A1964T	ENST00000368508	NM_002944.2	1964	Gca/Aca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647572	117647572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	162	643	0	ENST00000368508.3:c.5372G>T	p.Ser1791Ile	p.S1791I	ENST00000368508	NM_002944.2	1791	aGc/aTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663630	117663631	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs776274768		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	132	540	0	ENST00000368508.3:c.4601dup	p.Asn1534LysfsTer21	p.N1534Kfs*21	ENST00000368508	NM_002944.2	1534	aat/aaAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683963	117683963	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	166	700	0	ENST00000368508.3:c.3184G>T	p.Glu1062Ter	p.E1062*	ENST00000368508	NM_002944.2	1062	Gaa/Taa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129171	152129171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	236	866	0	ENST00000206249.3:c.124G>T	p.Val42Leu	p.V42L	ENST00000206249	NM_000125.3	42	Gtg/Ttg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099152	157099152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	88	500	0	ENST00000346085.5:c.89G>T	p.Ser30Ile	p.S30I	ENST00000346085	NM_020732.3	30	aGc/aTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157525086	157525086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	134	333	0	ENST00000346085.5:c.4981C>A	p.Leu1661Ile	p.L1661I	ENST00000346085	NM_020732.3	1661	Ctt/Att																																																																														
PARK2	0	MSKCC	GRCh37	6	162683555	162683555	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	130	558	0	ENST00000366898.1:c.412+2T>C		p.X138_splice	ENST00000366898	NM_004562.2	138																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444357	50444357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	78	410	0	ENST00000331340.3:c.287A>G	p.His96Arg	p.H96R	ENST00000331340	NM_006060.4	96	cAc/cGc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459547	50459547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	97	278	0	ENST00000331340.3:c.836C>A	p.Pro279His	p.P279H	ENST00000331340	NM_006060.4	279	cCt/cAt																																																																														
CDK6	1021	MSKCC	GRCh37	7	92300795	92300795	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	100	367	0	ENST00000265734.4:c.592A>G	p.Thr198Ala	p.T198A	ENST00000265734	NM_001259.6	198	Acc/Gcc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545573	106545573	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	79	523	0	ENST00000359195.3:c.3050A>G	p.Tyr1017Cys	p.Y1017C	ENST00000359195	NM_002649.2	1017	tAt/tGt																																																																														
MET	4233	MSKCC	GRCh37	7	116414030	116414030	+	intron_variant	Intron	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	19	1208	1	ENST00000397752.3:c.3029-905T>C		p.*1010*	ENST00000397752	NM_000245.2																																																																																
MET	4233	MSKCC	GRCh37	7	116418886	116418886	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs745437003		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	110	418	0	ENST00000397752.3:c.3397G>T	p.Asp1133Tyr	p.D1133Y	ENST00000397752	NM_000245.2	1133	Gat/Tat																																																																														
SMO	6608	MSKCC	GRCh37	7	128829111	128829111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	26	64	0	ENST00000249373.3:c.119G>A	p.Gly40Glu	p.G40E	ENST00000249373	NM_005631.4	40	gGg/gAg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148506220	148506220	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	203	480	0	ENST00000320356.2:c.2138T>C	p.Ile713Thr	p.I713T	ENST00000320356	NM_004456.4	713	aTa/aCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864462	151864462	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	110	347	0	ENST00000262189.6:c.9519T>A	p.Asn3173Lys	p.N3173K	ENST00000262189	NM_170606.2	3173	aaT/aaA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874604	151874604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	151	480	1	ENST00000262189.6:c.7934T>C	p.Val2645Ala	p.V2645A	ENST00000262189	NM_170606.2	2645	gTc/gCc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874767	151874767	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	118	421	0	ENST00000262189.6:c.7771G>T	p.Gly2591Ter	p.G2591*	ENST00000262189	NM_170606.2	2591	Gga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878377	151878377	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	207	720	0	ENST00000262189.6:c.6568T>C	p.Phe2190Leu	p.F2190L	ENST00000262189	NM_170606.2	2190	Ttt/Ctt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945396	151945396	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	176	780	1	ENST00000262189.6:c.2123C>A	p.Ser708Ter	p.S708*	ENST00000262189	NM_170606.2	708	tCa/tAa																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207497	29207497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	22	668	0	ENST00000240100.2:c.299G>C	p.Gly100Ala	p.G100A	ENST00000240100	NM_001394.6	100	gGc/gCc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162192	38162192	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	31	464	0	ENST00000317025.8:c.2524T>A	p.Ser842Thr	p.S842T	ENST00000317025	NM_023034.1	842	Tcc/Acc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38173512	38173512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777597698		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	166	646	0	ENST00000317025.8:c.1904G>A	p.Arg635His	p.R635H	ENST00000317025	NM_023034.1	635	cGc/cAc																																																																														
LYN	4067	MSKCC	GRCh37	8	56863304	56863304	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141769918		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	104	538	0	ENST00000519728.1:c.448G>A	p.Ala150Thr	p.A150T	ENST00000519728	NM_002350.3	150	Gct/Act																																																																														
LYN	4067	MSKCC	GRCh37	8	56864528	56864528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	159	610	1	ENST00000519728.1:c.491G>A	p.Ser164Asn	p.S164N	ENST00000519728	NM_002350.3	164	aGc/aAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950476	68950476	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1406399796		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	164	509	0	ENST00000288368.4:c.788G>A	p.Arg263Gln	p.R263Q	ENST00000288368	NM_024870.2	263	cGg/cAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028049	69028049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	145	589	0	ENST00000288368.4:c.3208C>T	p.Pro1070Ser	p.P1070S	ENST00000288368	NM_024870.2	1070	Cca/Tca																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981483	70981483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	350	1141	1	ENST00000276594.2:c.613G>A	p.Val205Ile	p.V205I	ENST00000276594	NM_024504.3	205	Gtt/Att																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981559	70981559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	291	1241	2	ENST00000276594.2:c.537G>T	p.Glu179Asp	p.E179D	ENST00000276594	NM_024504.3	179	gaG/gaT																																																																														
NBN	4683	MSKCC	GRCh37	8	90990463	90990463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	84	530	0	ENST00000265433.3:c.569C>A	p.Pro190His	p.P190H	ENST00000265433	NM_002485.4	190	cCt/cAt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141567330	141567330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	164	543	1	ENST00000220592.5:c.884C>T	p.Pro295Leu	p.P295L	ENST00000220592	NM_012154.3	295	cCg/cTg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737127	145737127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	147	819	0	ENST00000428558.2:c.3439C>A	p.Leu1147Met	p.L1147M	ENST00000428558	NM_004260.3	1147	Ctg/Atg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739320	145739320	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1483958590		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	273	789	0	ENST00000428558.2:c.2050A>G	p.Thr684Ala	p.T684A	ENST00000428558	NM_004260.3	684	Aca/Gca																																																																														
JAK2	3717	MSKCC	GRCh37	9	5064916	5064916	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	74	469	0	ENST00000381652.3:c.1090T>C	p.Ser364Pro	p.S364P	ENST00000381652	NM_004972.3	364	Tct/Cct																																																																														
JAK2	3717	MSKCC	GRCh37	9	5123066	5123066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	111	600	0	ENST00000381652.3:c.3122G>T	p.Gly1041Val	p.G1041V	ENST00000381652	NM_004972.3	1041	gGa/gTa																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5557701	5557701	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	28	646	0	ENST00000397747.3:c.715A>G	p.Thr239Ala	p.T239A	ENST00000397747	NM_025239.3	239	Aca/Gca																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5557710	5557710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	135	591	0	ENST00000397747.3:c.724G>T	p.Ala242Ser	p.A242S	ENST00000397747	NM_025239.3	242	Gcc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341892	8341892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	166	673	1	ENST00000356435.5:c.4748G>A	p.Gly1583Asp	p.G1583D	ENST00000356435		1583	gGc/gAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484203	8484203	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775510240		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	226	683	1	ENST00000356435.5:c.3329C>T	p.Thr1110Ile	p.T1110I	ENST00000356435		1110	aCc/aTc																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006036	22006036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1167893458		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	106	896	2	ENST00000276925.6:c.367C>T	p.Arg123Trp	p.R123W	ENST00000276925	NM_004936.3	123	Cgg/Tgg																																																																														
TEK	7010	MSKCC	GRCh37	9	27212870	27212870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	95	737	3	ENST00000380036.4:c.2852G>A	p.Gly951Asp	p.G951D	ENST00000380036	NM_000459.3	951	gGc/gAc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409509	80409509	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	172	711	0	ENST00000286548.4:c.606-1G>T		p.X202_splice	ENST00000286548	NM_002072.3	202																																																																															
FANCC	2176	MSKCC	GRCh37	9	97869451	97869451	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	257	885	0	ENST00000289081.3:c.1430C>G	p.Thr477Arg	p.T477R	ENST00000289081	NM_000136.2	477	aCa/aGa																																																																														
FANCC	2176	MSKCC	GRCh37	9	98009734	98009734	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	122	431	0	ENST00000289081.3:c.230A>C	p.Asn77Thr	p.N77T	ENST00000289081	NM_000136.2	77	aAt/aCt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98242701	98242701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547776340		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	185	559	1	ENST00000331920.6:c.916G>A	p.Ala306Thr	p.A306T	ENST00000331920	NM_000264.3	306	Gcc/Acc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98248045	98248045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	208	672	0	ENST00000331920.6:c.506T>C	p.Val169Ala	p.V169A	ENST00000331920	NM_000264.3	169	gTc/gCc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891320	101891320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	177	686	0	ENST00000374994.4:c.281C>A	p.Ser94Tyr	p.S94Y	ENST00000374994	NM_004612.2	94	tCt/tAt																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249417	110249417	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	377	1352	2	ENST00000374672.4:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000374672	NM_004235.4	386	Cga/Tga																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249873	110249873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	60	849	0	ENST00000374672.4:c.802G>A	p.Gly268Ser	p.G268S	ENST00000374672	NM_004235.4	268	Ggc/Agc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781486	135781486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	142	434	0	ENST00000298552.3:c.1479G>T	p.Glu493Asp	p.E493D	ENST00000298552	NM_001162426.1	493	gaG/gaT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393425	139393425	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542300217		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	281	860	1	ENST00000277541.6:c.6106G>A	p.Ala2036Thr	p.A2036T	ENST00000277541	NM_017617.3	2036	Gcc/Acc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395128	139395128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	331	948	1	ENST00000277541.6:c.5810G>A	p.Arg1937His	p.R1937H	ENST00000277541	NM_017617.3	1937	cGc/cAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395239	139395239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	292	885	0	ENST00000277541.6:c.5699G>T	p.Ser1900Ile	p.S1900I	ENST00000277541	NM_017617.3	1900	aGc/aTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400136	139400136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	317	1102	1	ENST00000277541.6:c.4212G>T	p.Glu1404Asp	p.E1404D	ENST00000277541	NM_017617.3	1404	gaG/gaT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401261	139401261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777189816		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	69	1042	0	ENST00000277541.6:c.3808G>A	p.Glu1270Lys	p.E1270K	ENST00000277541	NM_017617.3	1270	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417611	139417611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388726872		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	371	1063	2	ENST00000277541.6:c.433G>A	p.Ala145Thr	p.A145T	ENST00000277541	NM_017617.3	145	Gcc/Acc																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139566454	139566454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	268	999	0	ENST00000308874.7:c.713G>A	p.Ser238Asn	p.S238N	ENST00000308874		238	aGc/aAc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814825	139814825	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	263	822	0	ENST00000247668.2:c.818A>G	p.Glu273Gly	p.E273G	ENST00000247668	NM_021138.3	273	gAg/gGg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814843	139814843	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201077633		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	277	845	0	ENST00000247668.2:c.836C>T	p.Thr279Met	p.T279M	ENST00000247668	NM_021138.3	279	aCg/aTg																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20153882	20153882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	133	518	1	ENST00000379607.5:c.178C>T	p.His60Tyr	p.H60Y	ENST00000379607	NM_001412.3	60	Cac/Tac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911652	39911652	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	144	527	0	ENST00000378444.4:c.4978C>T	p.Pro1660Ser	p.P1660S	ENST00000378444	NM_001123385.1	1660	Cca/Tca																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44919382	44919382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	135	458	0	ENST00000377967.4:c.1310C>T	p.Ala437Val	p.A437V	ENST00000377967	NM_021140.2	437	gCc/gTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041197	47041197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	324	1008	1	ENST00000329236.7:c.1391C>A	p.Pro464His	p.P464H	ENST00000329236	NM_001204466.1	464	cCt/cAt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223485	53223485	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782288948		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	205	757	0	ENST00000375401.3:c.3874G>A	p.Ala1292Thr	p.A1292T	ENST00000375401	NM_004187.3	1292	Gcc/Acc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223605	53223605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	136	758	1	ENST00000375401.3:c.3754C>T	p.Arg1252Cys	p.R1252C	ENST00000375401	NM_004187.3	1252	Cgc/Tgc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411503	63411503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	191	950	0	ENST00000330258.3:c.1664A>G	p.Glu555Gly	p.E555G	ENST00000330258	NM_152424.3	555	gAg/gGg																																																																														
MED12	9968	MSKCC	GRCh37	X	70338654	70338654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	239	669	0	ENST00000374080.3:c.50C>T	p.Pro17Leu	p.P17L	ENST00000374080		17	cCg/cTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70340838	70340838	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	120	620	0	ENST00000374080.3:c.571A>G	p.Thr191Ala	p.T191A	ENST00000374080		191	Acc/Gcc																																																																														
MED12	9968	MSKCC	GRCh37	X	70343004	70343004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	200	701	0	ENST00000374080.3:c.1545G>T	p.Lys515Asn	p.K515N	ENST00000374080		515	aaG/aaT																																																																														
MED12	9968	MSKCC	GRCh37	X	70347751	70347751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	110	516	0	ENST00000374080.3:c.2990G>A	p.Cys997Tyr	p.C997Y	ENST00000374080		997	tGc/tAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76829818	76829818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	102	506	0	ENST00000373344.5:c.6223G>A	p.Gly2075Arg	p.G2075R	ENST00000373344	NM_000489.3	2075	Ggg/Agg																																																																														
ATRX	546	MSKCC	GRCh37	X	76931779	76931779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	69	526	1	ENST00000373344.5:c.3751T>C	p.Ser1251Pro	p.S1251P	ENST00000373344	NM_000489.3	1251	Tct/Cct																																																																														
ATRX	546	MSKCC	GRCh37	X	76938093	76938093	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	247	840	0	ENST00000373344.5:c.2655A>C	p.Arg885Ser	p.R885S	ENST00000373344	NM_000489.3	885	agA/agC																																																																														
ATRX	546	MSKCC	GRCh37	X	76944391	76944391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	125	562	0	ENST00000373344.5:c.514A>G	p.Thr172Ala	p.T172A	ENST00000373344	NM_000489.3	172	Act/Gct																																																																														
BTK	695	MSKCC	GRCh37	X	100604895	100604895	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	139	471	0	ENST00000308731.7:c.1958A>G	p.Asp653Gly	p.D653G	ENST00000308731	NM_000061.2	653	gAt/gGt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197789	123197789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	140	616	0	ENST00000218089.9:c.1913C>T	p.Ala638Val	p.A638V	ENST00000218089	NM_001042749.1	638	gCa/gTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123227876	123227876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868559404		P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	80	345	0	ENST00000218089.9:c.3587G>A	p.Gly1196Asp	p.G1196D	ENST00000218089	NM_001042749.1	1196	gGc/gAc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152864487	152864487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	17	73	0	ENST00000406277.2:c.41G>A	p.Gly14Asp	p.G14D	ENST00000406277	NM_152274.4	14	gGc/gAc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141568623	141568623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	208	727	0	ENST00000220592.5:c.839G>A	p.Arg280His	p.R280H	ENST00000220592	NM_012154.3	280	cGc/cAc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89849299	89849299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374490484		P-0036175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	143	669	0	ENST00000389301.3:c.1594G>A	p.Glu532Lys	p.E532K	ENST00000389301	NM_000135.2	532	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7577078	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCT	CTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCT	-			P-0036175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	213	750	0	ENST00000269305.4:c.860_920-1del		p.X287_splice	ENST00000269305	NM_001126112.2	287																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0036364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	24	507	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396851	139396851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	40	520	0	ENST00000277541.6:c.5257G>A	p.Gly1753Arg	p.G1753R	ENST00000277541	NM_017617.3	1753	Ggg/Agg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120351	70120352	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	66	881	0	ENST00000245479.2:c.1354dup	p.Tyr452LeufsTer126	p.Y452Lfs*126	ENST00000245479	NM_000346.3	451	-/T																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482393	56482393	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	45	548	0	ENST00000267101.3:c.941A>T	p.Lys314Ile	p.K314I	ENST00000267101	NM_001982.3	314	aAa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577084	7577084	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121912667		P-0036542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	131	685	0	ENST00000269305.4:c.854A>T	p.Glu285Val	p.E285V	ENST00000269305	NM_001126112.2	285	gAg/gTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	39	440	2	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115267929	115267929	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1322231550		P-0036542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	63	525	0	ENST00000438362.2:c.1804C>G	p.Leu602Val	p.L602V	ENST00000438362	NM_001242891.1	602	Ctg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	256	485	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	687	792	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214604	5214604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116515629		P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	302	743	2	ENST00000357368.4:c.4462G>A	p.Val1488Ile	p.V1488I	ENST00000357368	NM_002850.3	1488	Gtc/Atc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	62	301	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	123	530	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	97	266	0	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100451	8100451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266983268		P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	272	735	0	ENST00000346208.3:c.425C>T	p.Ser142Leu	p.S142L	ENST00000346208		142	tCg/tTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41228557	41228557	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	299	711	0	ENST00000357654.3:c.4432G>C	p.Glu1478Gln	p.E1478Q	ENST00000357654	NM_007294.3	1478	Gag/Cag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151896433	151896433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	82	465	0	ENST00000262189.6:c.4204G>A	p.Gly1402Ser	p.G1402S	ENST00000262189	NM_170606.2	1402	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0036600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	256	806	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0036600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	122	351	0	ENST00000257430.4:c.834+1G>C		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5212230	5212230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367918810		P-0036600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	125	741	1	ENST00000357368.4:c.4801G>A	p.Val1601Ile	p.V1601I	ENST00000357368	NM_002850.3	1601	Gtc/Atc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134451	30134459	+	inframe_deletion	In_Frame_Del	DEL	TCCCCCGGG	TCCCCCGGG	-			P-0036600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	67	665	0	ENST00000263025.4:c.72_80del	p.Pro25_Glu27del	p.P25_E27del	ENST00000263025	NM_002746.2	24	gtCCCGGGGGAg/gtg																																																																														
STK11	6794	MSKCC	GRCh37	19	1226620	1226620	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782687		P-0036600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	75	524	0	ENST00000326873.7:c.1276C>T	p.Arg426Trp	p.R426W	ENST00000326873	NM_000455.4	426	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	147	456	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849800	156849800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41358549		P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	174	377	0	ENST00000524377.1:c.2056C>T	p.Arg686Cys	p.R686C	ENST00000524377	NM_002529.3	686	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	99	266	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112174266	112174267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	99	262	0	ENST00000257430.4:c.2976dup	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	992	agt/agTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258607	16258607	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753287056		P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	41	322	0	ENST00000375759.3:c.5872C>T	p.Arg1958Trp	p.R1958W	ENST00000375759	NM_015001.2	1958	Cgg/Tgg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456353	99456353	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371466243		P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	120	275	1	ENST00000268035.6:c.1670C>T	p.Pro557Leu	p.P557L	ENST00000268035	NM_000875.3	557	cCg/cTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024045	31024045	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	61	427	0	ENST00000375687.4:c.3531del	p.Leu1178CysfsTer39	p.L1178Cfs*39	ENST00000375687	NM_015338.5	1177	cTt/ct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542714	187542714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	63	355	0	ENST00000441802.2:c.5026C>G	p.Leu1676Val	p.L1676V	ENST00000441802	NM_005245.3	1676	Ctt/Gtt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584629	187584629	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	60	402	0	ENST00000441802.2:c.3404A>C	p.Asn1135Thr	p.N1135T	ENST00000441802	NM_005245.3	1135	aAt/aCt																																																																														
APC	324	MSKCC	GRCh37	5	112175405	112175415	+	frameshift_variant	Frame_Shift_Del	DEL	CCACCTGAACA	CCACCTGAACA	-			P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	40	217	0	ENST00000257430.4:c.4115_4125del	p.Pro1372LeufsTer10	p.P1372Lfs*10	ENST00000257430	NM_000038.5	1372	CCACCTGAACAc/c																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163566	32163566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	68	360	0	ENST00000375023.3:c.5660C>T	p.Ala1887Val	p.A1887V	ENST00000375023	NM_004557.3	1887	gCt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	400	800	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265445	152265445	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149490424		P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	107	512	1	ENST00000206249.3:c.898C>T	p.Arg300Cys	p.R300C	ENST00000206249	NM_000125.3	300	Cgc/Tgc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666636	206666636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782318549		P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	144	607	0	ENST00000367120.3:c.1970G>A	p.Arg657Gln	p.R657Q	ENST00000367120	NM_014002.3	657	cGa/cAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114905796	114905796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1414161688		P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	108	486	1	ENST00000543371.1:c.815C>T	p.Thr272Met	p.T272M	ENST00000543371	NM_001198531.1	272	aCg/aTg																																																																														
YAP1	10413	MSKCC	GRCh37	11	102056833	102056833	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	75	420	0	ENST00000282441.5:c.773G>A	p.Trp258Ter	p.W258*	ENST00000282441	NM_001130145.2	258	tGg/tAg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46266506	46266506	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	98	359	0	ENST00000371998.3:c.2493del	p.Gln832LysfsTer8	p.Q832Kfs*8	ENST00000371998		831	Ttt/tt																																																																														
KDR	3791	MSKCC	GRCh37	4	55946331	55946331	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	46	262	0	ENST00000263923.4:c.3849-1G>C		p.X1283_splice	ENST00000263923	NM_002253.2	1283																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249471	153249471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	98	622	0	ENST00000281708.4:c.1307G>T	p.Ser436Ile	p.S436I	ENST00000281708	NM_033632.3	436	aGt/aTt																																																																														
APC	324	MSKCC	GRCh37	5	112175158	112175158	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	90	229	0	ENST00000257430.4:c.3867del	p.Cys1289Ter	p.C1289*	ENST00000257430	NM_000038.5	1289	tgT/tg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	39	529	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	17	437	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0037007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	395	575	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604764	48604765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	22	351	0	ENST00000342988.3:c.1587dup	p.His530ThrfsTer47	p.H530Tfs*47	ENST00000342988	NM_005359.5	529	tta/ttAa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111508	8111508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	138	523	1	ENST00000346208.3:c.994G>A	p.Ala332Thr	p.A332T	ENST00000346208		332	Gcc/Acc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914070	32914070	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs431825332		P-0037007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	73	454	0	ENST00000380152.3:c.5578A>G	p.Lys1860Glu	p.K1860E	ENST00000380152		1860	Aaa/Gaa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227653	36227653	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	307	513	0	ENST00000222270.7:c.7222A>T	p.Lys2408Ter	p.K2408*	ENST00000222270	NM_014727.1	2408	Aaa/Taa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032003	26032003	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	70	325	0	ENST00000244661.2:c.286G>C	p.Ala96Pro	p.A96P	ENST00000244661	NM_003537.3	96	Gct/Cct																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0037027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	334	548	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579443	7579444	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0037027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	174	647	0	ENST00000269305.4:c.243_244del	p.Pro82GlyfsTer66	p.P82Gfs*66	ENST00000269305	NM_001126112.2	81	acACcg/accg																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907714	111907714	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs376024148		P-0037027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	92	441	0	ENST00000393256.3:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000393256	NM_006538.4	163	tAt/tGt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87636339	87636339	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	56	670	0	ENST00000277120.3:c.2504A>G	p.Asp835Gly	p.D835G	ENST00000277120		835	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0037081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	269	525	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969370	44969371	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0037081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	170	342	1	ENST00000377967.4:c.4052_4053delinsTT	p.Arg1351Leu	p.R1351L	ENST00000377967	NM_021140.2	1351	cGA/cTT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0037103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	312	699	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	100	362	1				ENST00000310581	NM_198253.2																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0037103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	45	206	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101007	41101007	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375946335		P-0037103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	150	520	0	ENST00000373198.4:c.1349G>A	p.Arg450Gln	p.R450Q	ENST00000373198	NM_133170.3	450	cGa/cAa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52719107	52719107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	198	579	0	ENST00000322088.6:c.883G>A	p.Glu295Lys	p.E295K	ENST00000322088	NM_014225.5	295	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928076	178928084	+	inframe_deletion	In_Frame_Del	DEL	TTAGAAGAT	TTAGAAGAT	-			P-0037103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	367	504	0	ENST00000263967.3:c.1356_1364del	p.Glu453_Leu455del	p.E453_L455del	ENST00000263967	NM_006218.2	452	TTAGAAGAT/-																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137727	64137727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	212	777	0	ENST00000334205.4:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000334205	NM_003942.2	610	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258563	16258563	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	176	396	0	ENST00000375759.3:c.5828C>G	p.Ala1943Gly	p.A1943G	ENST00000375759	NM_015001.2	1943	gCg/gGg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7989422	7989422	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs779456276		P-0037103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	30	598	0	ENST00000319144.4:c.264G>T	p.Gln88His	p.Q88H	ENST00000319144	NM_001139.2	88	caG/caT																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564752	86564753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATT			P-0037103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	137	595	0	ENST00000274376.6:c.486_487insTTCA	p.Glu163PhefsTer18	p.E163Ffs*18	ENST00000274376	NM_002890.2	162	cca/cCATTca																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627278	86627278	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	149	396	0	ENST00000274376.6:c.655del	p.Ser219HisfsTer6	p.S219Hfs*6	ENST00000274376	NM_002890.2	218	cTt/ct																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493452	56493452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	92	428	0	ENST00000267101.3:c.2860A>T	p.Ile954Phe	p.I954F	ENST00000267101	NM_001982.3	954	Att/Ttt																																																																														
VHL	7428	MSKCC	GRCh37	3	10191499	10191500	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT			P-0037119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	127	509	0	ENST00000256474.2:c.495_497dup	p.Val166dup	p.V166dup	ENST00000256474	NM_000551.3	166	-/GTT																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807150	1807150	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs762079212		P-0037119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	151	873	0	ENST00000260795.2:c.1481T>C	p.Ile494Thr	p.I494T	ENST00000260795		494	aTt/aCt																																																																														
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs137853076		P-0037134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	319	892	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	285	838	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	250	328	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913470		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	351	565	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	101	370	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120173	70120173	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	926	415	1	ENST00000245479.2:c.1177del	p.Gln393SerfsTer10	p.Q393Sfs*10	ENST00000245479	NM_000346.3	392	tCc/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	300	513	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876658468		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	453	690	0	ENST00000269305.4:c.577C>G	p.His193Asp	p.H193D	ENST00000269305	NM_001126112.2	193	Cat/Gat																																																																														
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	79	284	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31389107	31389107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749860839		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	471	537	0	ENST00000328111.2:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000328111	NM_006892.3	674	Gaa/Aaa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12044533	12044533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	160	618	0	ENST00000353533.5:c.1156G>T	p.Asp386Tyr	p.D386Y	ENST00000353533	NM_003010.3	386	Gat/Tat																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619340	37619350	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGGTCTCTG	AGCGGTCTCTG	-			P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	207	413	0	ENST00000447079.4:c.1018_1028del	p.Arg340SerfsTer7	p.R340Sfs*7	ENST00000447079	NM_015083.1	339	aAGCGGTCTCTG/a																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210574	5210574	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771577284		P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	254	624	0	ENST00000357368.4:c.5393G>A	p.Arg1798His	p.R1798H	ENST00000357368	NM_002850.3	1798	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112154780	112154780	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	201	596	0	ENST00000257430.4:c.1051G>T	p.Gly351Ter	p.G351*	ENST00000257430	NM_000038.5	351	Gga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	127	436	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	182	632	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267361	198267361	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs754688962		P-0037148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	97	516	0	ENST00000335508.6:c.1996A>G	p.Lys666Glu	p.K666E	ENST00000335508	NM_012433.2	666	Aag/Gag																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871626	35871626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	34	323	0	ENST00000216797.5:c.880G>C	p.Glu294Gln	p.E294Q	ENST00000216797	NM_020529.2	294	Gag/Cag																																																																														
ALK	238	MSKCC	GRCh37	2	29445381	29445381	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0037148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	233	660	0	ENST00000389048.3:c.3450+2T>C		p.X1150_splice	ENST00000389048	NM_004304.4	1150																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323325	31323325	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	25	170	0	ENST00000412585.2:c.664G>C	p.Glu222Gln	p.E222Q	ENST00000412585	NM_005514.6	222	Gag/Cag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519964		P-0037176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	21	487	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0037245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	14	545	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0037245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	71	369	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	104	452	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112915455	112915455	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs121918463		P-0037245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	135	514	1	ENST00000351677.2:c.854T>C	p.Phe285Ser	p.F285S	ENST00000351677	NM_002834.3	285	tTt/tCt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2952993	2952993	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369115970		P-0037245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	118	609	1	ENST00000396946.4:c.2947G>A	p.Val983Met	p.V983M	ENST00000396946	NM_032415.4	983	Gtg/Atg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287229	46287229	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	116	388	0	ENST00000334344.6:c.5174C>A	p.Ser1725Ter	p.S1725*	ENST00000334344	NM_152641.2	1725	tCa/tAa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493442	56493442	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	96	401	0	ENST00000267101.3:c.2850T>G	p.Ile950Met	p.I950M	ENST00000267101	NM_001982.3	950	atT/atG																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141447	11141447	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	116	525	0	ENST00000344626.4:c.3424T>G	p.Phe1142Val	p.F1142V	ENST00000344626	NM_003072.3	1142	Ttc/Gtc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530088	212530088	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149498255		P-0037245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	92	346	0	ENST00000342788.4:c.1831G>A	p.Asp611Asn	p.D611N	ENST00000342788	NM_005235.2	611	Gat/Aat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38954932	38954932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	31	357	0	ENST00000357387.3:c.2641C>T	p.His881Tyr	p.H881Y	ENST00000357387	NM_152756.3	881	Cac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913285		P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	68	435	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	114	563	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049691	16049691	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	116	588	0	ENST00000268712.3:c.1081C>T	p.Arg361Ter	p.R361*	ENST00000268712	NM_006311.3	361	Cga/Tga																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362446	40362447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1202978138		P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	28	702	0	ENST00000293328.3:c.1749dup	p.His584ThrfsTer8	p.H584Tfs*8	ENST00000293328	NM_012448.3	583	-/A																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433620	49433620	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	104	991	2	ENST00000301067.7:c.7933C>T	p.Arg2645Ter	p.R2645*	ENST00000301067	NM_003482.3	2645	Cga/Tga																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959432	26959432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	217	585	1	ENST00000381527.3:c.599G>A	p.Arg200Gln	p.R200Q	ENST00000381527	NM_001260.1	200	cGa/cAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190824	11190824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868040471		P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	66	467	0	ENST00000361445.4:c.5375C>T	p.Ala1792Val	p.A1792V	ENST00000361445	NM_004958.3	1792	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023170	27023186	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCCCGGCGCGGAGC	CGGGCCCGGCGCGGAGC	-			P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	18	31	0	ENST00000324856.7:c.279_295del	p.Gly95GlufsTer10	p.G95Efs*10	ENST00000324856	NM_006015.4	92	ggCGGGCCCGGCGCGGAGCcg/ggcg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136068	64136068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	71	554	0	ENST00000334205.4:c.1329T>G	p.Ser443Arg	p.S443R	ENST00000334205	NM_003942.2	443	agT/agG																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026605	48026605	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779212		P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	162	521	1	ENST00000234420.5:c.1483C>T	p.Arg495Ter	p.R495*	ENST00000234420	NM_000179.2	495	Cga/Tga																																																																														
MLH1	4292	MSKCC	GRCh37	3	37059048	37059048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63749950		P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	81	502	1	ENST00000231790.2:c.842C>T	p.Ala281Val	p.A281V	ENST00000231790	NM_000249.3	281	gCa/gTa																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750467	41750467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	73	501	0	ENST00000226382.2:c.161C>T	p.Thr54Met	p.T54M	ENST00000226382	NM_003924.3	54	aCg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845933	151845933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	99	792	0	ENST00000262189.6:c.13079G>T	p.Trp4360Leu	p.W4360L	ENST00000262189	NM_170606.2	4360	tGg/tTg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36846857	36846857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	68	422	2	ENST00000358127.4:c.1082C>A	p.Pro361His	p.P361H	ENST00000358127	NM_001280556.1	361	cCc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	146	389	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	177	441	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	103	242	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	279	537	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																														
APC	324	MSKCC	GRCh37	5	112173582	112173582	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	71	258	0	ENST00000257430.4:c.2291T>A	p.Leu764Ter	p.L764*	ENST00000257430	NM_000038.5	764	tTa/tAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929426	81929426	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1364308657		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	181	376	0	ENST00000359376.3:c.1087G>A	p.Gly363Arg	p.G363R	ENST00000359376	NM_002661.3	363	Ggg/Agg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813903	50813903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1363261645		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	207	407	1	ENST00000398568.2:c.1457G>A	p.Arg486His	p.R486H	ENST00000398568	NM_001042412.1	486	cGt/cAt																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62322275	62322275	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs758245234		P-0037381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	267	734	2	ENST00000482936.1:c.2531G>A	p.Arg844Gln	p.R844Q	ENST00000482936		844	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0037388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	248	451	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112157646	112157647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	137	410	0	ENST00000257430.4:c.1369dup	p.Ser457PhefsTer3	p.S457Ffs*3	ENST00000257430	NM_000038.5	456	ctt/cTtt																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161420	2161420	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1176659285		P-0037388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	270	441	0	ENST00000434045.2:c.107G>T	p.Trp36Leu	p.W36L	ENST00000434045	NM_001127598.1	36	tGg/tTg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976939	18976946	+	frameshift_variant	Frame_Shift_Del	DEL	GCATGGCG	GCATGGCG	-			P-0037388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	47	352	0	ENST00000262803.5:c.3325_3332del	p.His1109GlyfsTer32	p.H1109Gfs*32	ENST00000262803	NM_002911.3	1108	caGCATGGCGgg/cagg																																																																														
KIT	3815	MSKCC	GRCh37	4	55599320	55599320	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913506		P-0037402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	106	390	1	ENST00000288135.5:c.2446G>T	p.Asp816Tyr	p.D816Y	ENST00000288135	NM_000222.2	816	Gac/Tac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288969	212288969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	92	423	0	ENST00000342788.4:c.2777C>A	p.Thr926Lys	p.T926K	ENST00000342788	NM_005235.2	926	aCg/aAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540055	187540055	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	80	370	0	ENST00000441802.2:c.7685A>C	p.Lys2562Thr	p.K2562T	ENST00000441802	NM_005245.3	2562	aAa/aCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0037442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	244	580	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0037442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	60	663	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
HGF	3082	MSKCC	GRCh37	7	81346592	81346592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764869064		P-0037442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	33	373	0	ENST00000222390.5:c.1361C>T	p.Thr454Met	p.T454M	ENST00000222390	NM_000601.4	454	aCg/aTg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981475	201981496	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCTCTTCTGATGAGCTCAG	CCAGCTCTTCTGATGAGCTCAG	-			P-0037442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	62	597	0	ENST00000359651.3:c.389_410del	p.Ser130PhefsTer18	p.S130Ffs*18	ENST00000359651		130	tCCAGCTCTTCTGATGAGCTCAGt/tt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428659	49428659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	50	682	0	ENST00000301067.7:c.10291G>T	p.Ala3431Ser	p.A3431S	ENST00000301067	NM_003482.3	3431	Gct/Tct																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	325	817	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0037483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	492	777	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205050	128205050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	296	803	0	ENST00000341105.2:c.391G>A	p.Ala131Thr	p.A131T	ENST00000341105	NM_032638.4	131	Gct/Act																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226806	2226806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	164	362	0	ENST00000398665.3:c.4286C>G	p.Ser1429Cys	p.S1429C	ENST00000398665	NM_032482.2	1429	tCt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175230	112175233	+	frameshift_variant	Frame_Shift_Del	DEL	TAGG	TAGG	-			P-0037483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	159	350	0	ENST00000257430.4:c.3940_3943del	p.Arg1314GlnfsTer6	p.R1314Qfs*6	ENST00000257430	NM_000038.5	1313	acTAGG/ac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	134	333	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	216	472	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	286	605	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	7767	611	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	176	380	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	163	319	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245456	153245456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	281	551	0	ENST00000281708.4:c.1735G>A	p.Gly579Arg	p.G579R	ENST00000281708	NM_033632.3	579	Ggg/Agg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607759	46607759	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	118	641	0	ENST00000263734.3:c.1948del	p.Thr650GlnfsTer46	p.T650Qfs*46	ENST00000263734	NM_001430.4	650	Aca/ca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385164	41385164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	250	591	0	ENST00000373198.4:c.797G>A	p.Arg266His	p.R266H	ENST00000373198	NM_133170.3	266	cGc/cAc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523100	176523101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGACAATGT			P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	260	655	0	ENST00000292408.4:c.1865_1874dup	p.Met626GlyfsTer8	p.M626Gfs*8	ENST00000292408	NM_213647.1	622	gag/gAGGACAATGTag																																																																														
HGF	3082	MSKCC	GRCh37	7	81374372	81374372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	218	453	0	ENST00000222390.5:c.690G>T	p.Lys230Asn	p.K230N	ENST00000222390	NM_000601.4	230	aaG/aaT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405240	139405240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1420968156		P-0037490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	118	623	1	ENST00000277541.6:c.2605G>A	p.Asp869Asn	p.D869N	ENST00000277541	NM_017617.3	869	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0037535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	182	761	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519886		P-0037535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	28	369	0	ENST00000349496.5:c.97T>G	p.Ser33Ala	p.S33A	ENST00000349496	NM_001904.3	33	Tct/Gct																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222868	5222868	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1028304582		P-0037535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	75	600	0	ENST00000357368.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000357368	NM_002850.3	979	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992054	72992054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	203	675	1	ENST00000268489.5:c.1991C>T	p.Ser664Phe	p.S664F	ENST00000268489	NM_006885.3	664	tCt/tTt																																																																														
ERG	2078	MSKCC	GRCh37	21	39775583	39775583	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369318352		P-0037535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	178	536	1	ENST00000288319.7:c.437C>T	p.Ala146Val	p.A146V	ENST00000288319	NM_182918.3	146	gCg/gTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069562	69069562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	94	388	0	ENST00000288368.4:c.4237G>C	p.Glu1413Gln	p.E1413Q	ENST00000288368	NM_024870.2	1413	Gag/Cag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245849	46245849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	71	430	0	ENST00000334344.6:c.3943G>A	p.Glu1315Lys	p.E1315K	ENST00000334344	NM_152641.2	1315	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88727493	88727493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	199	643	0	ENST00000360948.2:c.286G>T	p.Ala96Ser	p.A96S	ENST00000360948	NM_001012338.2	96	Gcc/Tcc																																																																														
NF2	4771	MSKCC	GRCh37	22	30038252	30038252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	133	519	0	ENST00000338641.4:c.425C>G	p.Ala142Gly	p.A142G	ENST00000338641	NM_000268.3	142	gCt/gGt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389360	8389360	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	73	576	0	ENST00000356435.5:c.4258A>G	p.Arg1420Gly	p.R1420G	ENST00000356435		1420	Agg/Ggg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767830105		P-0037541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	127	578	0	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587780074		P-0037541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	100	677	1	ENST00000269305.4:c.737T>G	p.Met246Arg	p.M246R	ENST00000269305	NM_001126112.2	246	aTg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579722	7579722	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0037541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	94	554	0	ENST00000269305.4:c.75-1G>A		p.X25_splice	ENST00000269305	NM_001126112.2	25																																																																															
APC	324	MSKCC	GRCh37	5	112174291	112174291	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	125	347	0	ENST00000257430.4:c.3002del	p.Pro1001GlnfsTer4	p.P1001Qfs*4	ENST00000257430	NM_000038.5	1000	taC/ta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	65	555	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577029	7577029	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	208	776	0	ENST00000269305.4:c.909del	p.Ser303ArgfsTer42	p.S303Rfs*42	ENST00000269305	NM_001126112.2	303	agC/ag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593446	48593447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	134	484	0	ENST00000342988.3:c.1198_1199insAA	p.Arg400LysfsTer16	p.R400Kfs*16	ENST00000342988	NM_005359.5	399	-/AA																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068422	26068426	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTC	TTTTC	-			P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	64	468	0	ENST00000435504.4:c.64_68del	p.Glu22IlefsTer9	p.E22Ifs*9	ENST00000435504		22	GAAAAa/a																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	146	565	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	146	565	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913385		P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	146	565	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0037544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	81	348	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50816372	50816372	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	113	329	0	ENST00000398568.2:c.1812A>T	p.Leu604Phe	p.L604F	ENST00000398568	NM_001042412.1	604	ttA/ttT																																																																														
MSH3	4437	MSKCC	GRCh37	5	80160741	80160741	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1454115884		P-0037610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	181	569	0	ENST00000265081.6:c.3110A>G	p.Asp1037Gly	p.D1037G	ENST00000265081	NM_002439.4	1037	gAt/gGt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223188	5223188	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374591804		P-0037750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	10	1016	0	ENST00000357368.4:c.2615G>A	p.Arg872His	p.R872H	ENST00000357368	NM_002850.3	872	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0037763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	34	793	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	54	700	1	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	4	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0037874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	104	391	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48916734	48916736	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGG	GGG	-			P-0037874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	27	226	0	ENST00000267163.4:c.265-1_266del		p.X89_splice	ENST00000267163	NM_000321.2	89																																																																															
TSC2	7249	MSKCC	GRCh37	16	2110711	2110711	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	26	594	0	ENST00000219476.3:c.1016T>C	p.Val339Ala	p.V339A	ENST00000219476	NM_000548.3	339	gTc/gCc																																																																														
NF1	4763	MSKCC	GRCh37	17	29508486	29508486	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	72	290	0	ENST00000358273.4:c.633del	p.Val212LeufsTer2	p.V212Lfs*2	ENST00000358273	NM_001042492.2	211	gcA/gc																																																																														
STK40	83931	MSKCC	GRCh37	1	36820971	36820971	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766507697		P-0037948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	131	728	0	ENST00000373129.3:c.406C>T	p.Arg136Cys	p.R136C	ENST00000373129	NM_032017.1	136	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0037948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	505	687	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66218760	66218760	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	65	222	0	ENST00000273854.3:c.2298G>T	p.Lys766Asn	p.K766N	ENST00000273854	NM_004439.5	766	aaG/aaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638533	176638533	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377148087		P-0037948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	129	715	0	ENST00000439151.2:c.3133C>T	p.Arg1045Cys	p.R1045C	ENST00000439151	NM_022455.4	1045	Cgt/Tgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874178	151874178	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	55	319	0	ENST00000262189.6:c.8360A>G	p.Asn2787Ser	p.N2787S	ENST00000262189	NM_170606.2	2787	aAt/aGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	258	482	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	386	713	1	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
MGA	23269	MSKCC	GRCh37	15	42052626	42052626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	154	582	4	ENST00000219905.7:c.7297C>T	p.Arg2433Trp	p.R2433W	ENST00000219905	NM_001164273.1	2433	Cgg/Tgg																																																																														
KDR	3791	MSKCC	GRCh37	4	55948737	55948737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150847930		P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	91	675	0	ENST00000263923.4:c.3728C>T	p.Pro1243Leu	p.P1243L	ENST00000263923	NM_002253.2	1243	cCg/cTg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176132959	176132959	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	166	486	0	ENST00000367669.3:c.634A>C	p.Ser212Arg	p.S212R	ENST00000367669	NM_022457.5	212	Agt/Cgt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969817	81969817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	81	618	0	ENST00000359376.3:c.2886G>C	p.Lys962Asn	p.K962N	ENST00000359376	NM_002661.3	962	aaG/aaC																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836417	89836417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1242381795		P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	271	613	0	ENST00000389301.3:c.2332G>A	p.Ala778Thr	p.A778T	ENST00000389301	NM_000135.2	778	Gcc/Acc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097131	11097131	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748298484		P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	372	851	0	ENST00000344626.4:c.622C>T	p.Arg208Trp	p.R208W	ENST00000344626	NM_003072.3	208	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663651	117663651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	55	488	0	ENST00000368508.3:c.4581G>C	p.Met1527Ile	p.M1527I	ENST00000368508	NM_002944.2	1527	atG/atC																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987388	2987388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1192456063		P-0037968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	252	600	0	ENST00000396946.4:c.41C>T	p.Thr14Met	p.T14M	ENST00000396946	NM_032415.4	14	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0037974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	550	804	2	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15995282	15995282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	113	575	0	ENST00000268712.3:c.2911G>A	p.Ala971Thr	p.A971T	ENST00000268712	NM_006311.3	971	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	358	751	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs387906850		P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	93	552	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735503	40735503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763584414		P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	148	621	0	ENST00000373198.4:c.3370G>A	p.Glu1124Lys	p.E1124K	ENST00000373198	NM_133170.3	1124	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	157	518	1	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983146	201983146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	121	550	0	ENST00000359651.3:c.995C>T	p.Ala332Val	p.A332V	ENST00000359651		332	gCc/gTc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477097	67477115	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGTCTTCGCAGAGTGCC	GAGGTCTTCGCAGAGTGCC	CA			P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	358	662	2	ENST00000327367.4:c.904_922delinsCA	p.Glu302HisfsTer3	p.E302Hfs*3	ENST00000327367	NM_005902.3	302	GAGGTCTTCGCAGAGTGCCtc/CAtc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99156029	99156029	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	115	558	1	ENST00000074304.5:c.709A>T	p.Thr237Ser	p.T237S	ENST00000074304	NM_001134224.1	237	Acc/Tcc																																																																														
CASP8	841	MSKCC	GRCh37	2	202141611	202141611	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	108	468	0	ENST00000358485.4:c.899A>C	p.Asn300Thr	p.N300T	ENST00000358485	NM_001080125.1	300	aAt/aCt																																																																														
APC	324	MSKCC	GRCh37	5	112175558	112175561	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0038051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	134	370	0	ENST00000257430.4:c.4268_4271del	p.Leu1423GlnfsTer49	p.L1423Qfs*49	ENST00000257430	NM_000038.5	1423	CTTCca/ca																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs775623976		P-0038421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	208	528	0	ENST00000335508.6:c.1873C>G	p.Arg625Gly	p.R625G	ENST00000335508	NM_012433.2	625	Cgt/Ggt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591119	67591124	+	inframe_deletion	In_Frame_Del	DEL	TCCAGC	TCCAGC	-			P-0038421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	40	389	0	ENST00000274335.5:c.1713_1718del	p.Ile571_Leu573delinsMet	p.I571_L573delinsM	ENST00000274335		571	aTCCAGCtg/atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0038498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	307	674	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0038498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	204	456	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
SDHB	6390	MSKCC	GRCh37	1	17349179	17349179	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782604		P-0038498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	83	574	1	ENST00000375499.3:c.689G>A	p.Arg230His	p.R230H	ENST00000375499	NM_003000.2	230	cGc/cAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266493	41266501	+	inframe_deletion	In_Frame_Del	DEL	CTATGTTCC	CTATGTTCC	-			P-0038498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	118	491	0	ENST00000349496.5:c.292_300del	p.Met98_Pro100del	p.M98_P100del	ENST00000349496	NM_001904.3	97	gCTATGTTCCct/gct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	167	496	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519919		P-0038761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	290	803	0	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0038761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	147	562	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913288		P-0038761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	171	545	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921555	178921555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	124	431	0	ENST00000263967.3:c.1037T>A	p.Val346Glu	p.V346E	ENST00000263967	NM_006218.2	346	gTa/gAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023539	27023539	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	357	415	0	ENST00000324856.7:c.645C>G	p.Tyr215Ter	p.Y215*	ENST00000324856	NM_006015.4	215	taC/taG																																																																														
RAF1	5894	MSKCC	GRCh37	3	12633207	12633207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs730880382		P-0038761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	223	577	0	ENST00000251849.4:c.1193G>T	p.Arg398Leu	p.R398L	ENST00000251849	NM_002880.3	398	cGc/cTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653843	89653843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	143	521	0	ENST00000371953.3:c.141G>T	p.Arg47Ser	p.R47S	ENST00000371953	NM_000314.4	47	agG/agT																																																																														
KDM5A	5927	MSKCC	GRCh37	12	461475	461475	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs998253161		P-0038761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	186	535	0	ENST00000399788.2:c.1045C>G	p.Arg349Gly	p.R349G	ENST00000399788	NM_001042603.1	349	Cga/Gga																																																																														
NBN	4683	MSKCC	GRCh37	8	90970987	90970987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765403660		P-0038761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	198	450	1	ENST00000265433.3:c.1090G>A	p.Val364Ile	p.V364I	ENST00000265433	NM_002485.4	364	Gta/Ata																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0039619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	818	947	8	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413105	63413105	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374303948		P-0039619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	240	1022	4	ENST00000330258.3:c.62G>A	p.Arg21His	p.R21H	ENST00000330258	NM_152424.3	21	cGt/cAt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209685	98209685	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1216794003		P-0039619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	247	952	1	ENST00000331920.6:c.3853C>A	p.Gln1285Lys	p.Q1285K	ENST00000331920	NM_000264.3	1285	Cag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	433	412	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913275		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	237	674	3	ENST00000263967.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76907621	76907621	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	189	477	0	ENST00000373344.5:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000373344	NM_000489.3	1514	Cga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123182910	123182910	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	116	325	0	ENST00000218089.9:c.875T>C	p.Val292Ala	p.V292A	ENST00000218089	NM_001042749.1	292	gTg/gCg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732946	30732946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	123	410	0	ENST00000359013.4:c.1634G>A	p.Cys545Tyr	p.C545Y	ENST00000359013	NM_001024847.2	545	tGc/tAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80064770	80064770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1261908217		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	311	497	1	ENST00000265081.6:c.2201G>A	p.Arg734Gln	p.R734Q	ENST00000265081	NM_002439.4	734	cGa/cAa																																																																														
CBL	867	MSKCC	GRCh37	11	119169109	119169109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373587039		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	190	532	1	ENST00000264033.4:c.2293G>A	p.Glu765Lys	p.E765K	ENST00000264033	NM_005188.3	765	Gag/Aag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117835	70117836	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	185	650	0	ENST00000245479.2:c.304_305dup	p.Pro103SerfsTer8	p.P103Sfs*8	ENST00000245479	NM_000346.3	101	-/AA																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208247	5208247	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	148	680	1	ENST00000357368.4:c.5642+1G>A		p.X1881_splice	ENST00000357368	NM_002850.3	1881																																																																															
EP300	2033	MSKCC	GRCh37	22	41564520	41564521	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	234	547	0	ENST00000263253.7:c.3942_3943del	p.Asn1314LysfsTer3	p.N1314Kfs*3	ENST00000263253	NM_001429.3	1314	aaTCac/aaac																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715720	30715720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	143	329	2	ENST00000359013.4:c.1453C>G	p.Arg485Gly	p.R485G	ENST00000359013	NM_001024847.2	485	Cgc/Ggc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41265774	41266180	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACC	TCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACC	-			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	183	42	0	ENST00000349496.5:c.13+204_179del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
KDR	3791	MSKCC	GRCh37	4	55981474	55981474	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	165	435	0	ENST00000263923.4:c.463del	p.Ser155GlnfsTer37	p.S155Qfs*37	ENST00000263923	NM_002253.2	155	Tca/ca																																																																														
TET2	54790	MSKCC	GRCh37	4	106196375	106196375	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1311791804		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	136	336	0	ENST00000380013.4:c.4708A>G	p.Met1570Val	p.M1570V	ENST00000380013	NM_001127208.2	1570	Atg/Gtg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057248	180057248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775547530		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	471	821	2	ENST00000261937.6:c.490G>A	p.Gly164Ser	p.G164S	ENST00000261937	NM_182925.4	164	Ggc/Agc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662614	117662614	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs751986538		P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	144	437	2	ENST00000368508.3:c.4851G>T	p.Arg1617Ser	p.R1617S	ENST00000368508	NM_002944.2	1617	agG/agT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708157	117708157	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	112	437	1	ENST00000368508.3:c.2020G>T	p.Glu674Ter	p.E674*	ENST00000368508	NM_002944.2	674	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151947938	151947938	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	134	480	0	ENST00000262189.6:c.1735G>T	p.Ala579Ser	p.A579S	ENST00000262189	NM_170606.2	579	Gcg/Tcg																																																																														
ATRX	546	MSKCC	GRCh37	X	76938212	76938212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	197	600	0	ENST00000373344.5:c.2536G>T	p.Asp846Tyr	p.D846Y	ENST00000373344	NM_000489.3	846	Gat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	42	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0039658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	67	568	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044539	47044548	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGAGATGA	TGCGAGATGA	-			P-0039658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	101	592	0	ENST00000329236.7:c.1802_1811del	p.Leu601ProfsTer22	p.L601Pfs*22	ENST00000329236	NM_001204466.1	601	cTGCGAGATGAc/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	110	322	0				ENST00000310581	NM_198253.2																																																																																
MET	4233	MSKCC	GRCh37	7	116395529	116395529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			655	125	337	0	ENST00000397752.3:c.1822G>C	p.Glu608Gln	p.E608Q	ENST00000397752	NM_000245.2	608	Gag/Cag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730799	40730799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	167	572	0	ENST00000373198.4:c.3736G>A	p.Glu1246Lys	p.E1246K	ENST00000373198	NM_133170.3	1246	Gaa/Aaa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465606	99465606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	188	454	1	ENST00000268035.6:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000268035	NM_000875.3	811	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969327	44969327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			42	209	119	0	ENST00000377967.4:c.4009G>A	p.Glu1337Lys	p.E1337K	ENST00000377967	NM_021140.2	1337	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057961	27057961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			524	278	587	0	ENST00000324856.7:c.1669C>T	p.Gln557Ter	p.Q557*	ENST00000324856	NM_006015.4	557	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576858	7576858	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	407	518	0	ENST00000269305.4:c.988del	p.Leu330PhefsTer15	p.L330Ffs*15	ENST00000269305	NM_001126112.2	330	Ctt/tt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940022	49940022	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760389915		P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	608	668	1	ENST00000296474.3:c.1021G>A	p.Glu341Lys	p.E341K	ENST00000296474	NM_002447.2	341	Gag/Aag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932926	39932926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	226	253	0	ENST00000378444.4:c.1673C>T	p.Ser558Leu	p.S558L	ENST00000378444	NM_001123385.1	558	tCa/tTa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080656	5080656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs769318116		P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			74	167	320	0	ENST00000381652.3:c.2407C>T	p.Arg803Ter	p.R803*	ENST00000381652	NM_004972.3	803	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435975	110435975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	189	735	0	ENST00000375856.3:c.2426C>G	p.Ser809Cys	p.S809C	ENST00000375856	NM_003749.2	809	tCc/tGc																																																																														
INSR	3643	MSKCC	GRCh37	19	7184360	7184360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			700	217	600	0	ENST00000302850.5:c.941A>T	p.Glu314Val	p.E314V	ENST00000302850	NM_000208.2	314	gAg/gTg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976501	18976501	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			870	275	772	0	ENST00000262803.5:c.3151C>G	p.Gln1051Glu	p.Q1051E	ENST00000262803	NM_002911.3	1051	Cag/Gag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940475	49940475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	618	707	0	ENST00000296474.3:c.568G>C	p.Glu190Gln	p.E190Q	ENST00000296474	NM_002447.2	190	Gag/Cag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779150	135779169	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAGTAAAAGCAACTGGTC	TGCAGTAAAAGCAACTGGTC	-			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	224	388	0	ENST00000298552.3:c.2077_2096del	p.Asp693GlnfsTer6	p.D693Qfs*6	ENST00000298552	NM_001162426.1	693	GACCAGTTGCTTTTACTGCAc/c																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11118656	11118656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			833	251	705	1	ENST00000344626.4:c.2080G>T	p.Asp694Tyr	p.D694Y	ENST00000344626	NM_003072.3	694	Gac/Tac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11172463	11172463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776222414		P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	304	656	1	ENST00000344626.4:c.4915C>T	p.Arg1639Cys	p.R1639C	ENST00000344626	NM_003072.3	1639	Cgc/Tgc																																																																														
REL	5966	MSKCC	GRCh37	2	61118948	61118948	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	139	341	0	ENST00000295025.8:c.143del	p.Pro48LeufsTer6	p.P48Lfs*6	ENST00000295025	NM_002908.2	47	taC/ta																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182681729	182681729	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039666-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	196	403	0	ENST00000292782.4:c.329G>C	p.Arg110Thr	p.R110T	ENST00000292782	NM_020640.2	110	aGa/aCa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	236	556	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	251	654	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767360		P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	104	370	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173374	112173374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	167	363	1	ENST00000257430.4:c.2083C>T	p.Gln695Ter	p.Q695*	ENST00000257430	NM_000038.5	695	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175630	112175630	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	67	378	0	ENST00000257430.4:c.4339del	p.Gln1447LysfsTer26	p.Q1447Kfs*26	ENST00000257430	NM_000038.5	1447	Caa/aa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100594	157100594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	137	310	0	ENST00000346085.5:c.1531G>A	p.Gly511Ser	p.G511S	ENST00000346085	NM_020732.3	511	Ggc/Agc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741739	145741740	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGGCTGGGGGCTCCCCACACGGATGCTGACTT			P-0039693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	124	556	0	ENST00000428558.2:c.731_763dup	p.Pro254_Ser255insLysValSerIleArgValGlySerProGlnPro	p.P254_S255insKVSIRVGSPQP	ENST00000428558	NM_004260.3	255	agc/aAAGTCAGCATCCGTGTGGGGAGCCCCCAGCCCAgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	179	405	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	302	785	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164619	36164628	+	frameshift_variant	Frame_Shift_Del	DEL	ACCATGGAGA	ACCATGGAGA	-			P-0039735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	220	638	0	ENST00000300305.3:c.1247_1256del	p.Phe416TrpfsTer175	p.F416Wfs*175	ENST00000300305		416	tTCTCCATGGTg/tg																																																																														
EP300	2033	MSKCC	GRCh37	22	41566472	41566472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	61	297	0	ENST00000263253.7:c.4349G>A	p.Cys1450Tyr	p.C1450Y	ENST00000263253	NM_001429.3	1450	tGc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0039749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	268	542	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0039814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	136	810	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658296	18658296	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371412006		P-0039814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	79	614	1	ENST00000266497.5:c.3101G>A	p.Arg1034His	p.R1034H	ENST00000266497		1034	cGt/cAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18473932	18473932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	88	363	0	ENST00000266497.5:c.1174C>A	p.Leu392Ile	p.L392I	ENST00000266497		392	Ctt/Att																																																																														
BRCA1	672	MSKCC	GRCh37	17	41209108	41209108	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	108	808	0	ENST00000357654.3:c.5238C>A	p.His1746Gln	p.H1746Q	ENST00000357654	NM_007294.3	1746	caC/caA																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422530	225422530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	59	418	0	ENST00000264414.4:c.110T>C	p.Leu37Pro	p.L37P	ENST00000264414	NM_003590.4	37	cTg/cCg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141572589	141572589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	42	810	0	ENST00000220592.5:c.481G>T	p.Ala161Ser	p.A161S	ENST00000220592	NM_012154.3	161	Gcc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	75	473	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs17849781		P-0039865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	362	986	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																														
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587782082		P-0039865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	434	894	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100556	8100556	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528856735		P-0039865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	940	846	2	ENST00000346208.3:c.530G>A	p.Arg177Gln	p.R177Q	ENST00000346208		177	cGg/cAg																																																																														
BBC3	27113	MSKCC	GRCh37	19	47731445	47731445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	11	54	0	ENST00000449228.1:c.347C>T	p.Pro116Leu	p.P116L	ENST00000449228	NM_001127240.2	116	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	178	521	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	343	847	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0039868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	206	658	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0039868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	27	33	1	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624279	89624280	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	416	554	0	ENST00000371953.3:c.55dup	p.Asp19GlyfsTer25	p.D19Gfs*25	ENST00000371953	NM_000314.4	18	gag/gaGg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699372	47699372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	124	484	1	ENST00000347630.2:c.136G>A	p.Glu46Lys	p.E46K	ENST00000347630	NM_001007230.1	46	Gag/Aag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602870	10602870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	470	1243	0	ENST00000171111.5:c.708C>G	p.Asp236Glu	p.D236E	ENST00000171111	NM_203500.1	236	gaC/gaG																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591142	67591142	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	117	372	0	ENST00000274335.5:c.1735C>T	p.Gln579Ter	p.Q579*	ENST00000274335		579	Caa/Taa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128018812	128018813	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	177	544	0	ENST00000285398.2:c.2055dup	p.Ser686Ter	p.S686*	ENST00000285398	NM_000122.1	685	-/T																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719260	190719260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	105	360	0	ENST00000441310.2:c.1262G>A	p.Cys421Tyr	p.C421Y	ENST00000441310	NM_000534.4	421	tGt/tAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361164	66361164	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0039868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	128	413	0	ENST00000273854.3:c.1008T>A	p.Cys336Ter	p.C336*	ENST00000273854	NM_004439.5	336	tgT/tgA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593292	67593298	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTTTG	GGCTTTG	-			P-0039868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	131	355	0	ENST00000274335.5:c.2038_2044del	p.Gly680ProfsTer10	p.G680Pfs*10	ENST00000274335		680	GGCTTTGcc/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469780	157469780	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	296	903	0	ENST00000346085.5:c.2574del	p.Tyr859IlefsTer55	p.Y859Ifs*55	ENST00000346085	NM_020732.3	858	gcG/gc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690940		P-0039942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	178	918	0	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579316	7579317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	136	707	0	ENST00000269305.4:c.370dup	p.Cys124LeufsTer25	p.C124Lfs*25	ENST00000269305	NM_001126112.2	124	tgc/tTgc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26974675	26974676	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0039942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	116	581	0	ENST00000381527.3:c.1019_1020del	p.Leu340ProfsTer25	p.L340Pfs*25	ENST00000381527	NM_001260.1	340	cTT/c																																																																														
CDH1	999	MSKCC	GRCh37	16	68857527	68857530	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TAAG	TAAG	-	rs1415253676		P-0039942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	172	471	0	ENST00000261769.5:c.2164+3_2164+6del		p.X722_splice	ENST00000261769	NM_004360.3	722																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	56	338	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	141	641	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	28	295	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	26	199	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	168	644	1	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	58	614	3	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	99	467	3	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	56	310	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	111	474	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161324	55161324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514550		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	43	355	0	ENST00000257290.5:c.3155C>T	p.Thr1052Met	p.T1052M	ENST00000257290	NM_006206.4	1052	aCg/aTg																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	64	438	10	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981861	101981863	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	164	721	1	ENST00000282441.5:c.286_288del	p.Phe96del	p.F96del	ENST00000282441	NM_001130145.2	94	tcCTTc/tcc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729601	41729601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	92	465	0	ENST00000242208.4:c.928C>T	p.Arg310Trp	p.R310W	ENST00000242208	NM_002192.2	310	Cgg/Tgg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674234	86674234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	41	244	0	ENST00000274376.6:c.2366G>A	p.Arg789Gln	p.R789Q	ENST00000274376	NM_002890.2	789	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112170660	112170660	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	31	285	0	ENST00000257430.4:c.1759del	p.Ser587AlafsTer3	p.S587Afs*3	ENST00000257430	NM_000038.5	586	Aaa/aa																																																																														
MGA	23269	MSKCC	GRCh37	15	42054540	42054541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	64	308	1	ENST00000219905.7:c.7731dup	p.Asp2578ArgfsTer45	p.D2578Rfs*45	ENST00000219905	NM_001164273.1	2575	aga/agAa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097781	8097781	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763176056		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	163	702	0	ENST00000346208.3:c.163G>A	p.Gly55Ser	p.G55S	ENST00000346208		55	Ggt/Agt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937603	76937603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	30	243	0	ENST00000373344.5:c.3145del	p.Ile1049Ter	p.I1049*	ENST00000373344	NM_000489.3	1049	Ata/ta																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	89	468	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711903	89711903	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622341		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	62	392	0	ENST00000371953.3:c.521A>G	p.Tyr174Cys	p.Y174C	ENST00000371953	NM_000314.4	174	tAt/tGt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391361	139391361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	167	720	2	ENST00000277541.6:c.6830C>A	p.Pro2277His	p.P2277H	ENST00000277541	NM_017617.3	2277	cCt/cAt																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182677	38182678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	118	401	0	ENST00000396334.3:c.834dup	p.Ser279GlnfsTer153	p.S279Qfs*153	ENST00000396334	NM_002468.4	277	ttc/ttCc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166763	32166763	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761314959		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	152	739	0	ENST00000375023.3:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000375023	NM_004557.3	1492	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434325	49434325	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	198	805	0	ENST00000301067.7:c.7228C>T	p.Arg2410Ter	p.R2410*	ENST00000301067	NM_003482.3	2410	Cga/Tga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268792	98268793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	109	467	0	ENST00000331920.6:c.290dup	p.Asn97LysfsTer43	p.N97Kfs*43	ENST00000331920	NM_000264.3	97	aac/aaAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665377	176665377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	80	340	0	ENST00000439151.2:c.4061G>A	p.Gly1354Asp	p.G1354D	ENST00000439151	NM_022455.4	1354	gGc/gAc																																																																														
STK40	83931	MSKCC	GRCh37	1	36809860	36809860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	105	524	2	ENST00000373129.3:c.745C>T	p.Pro249Ser	p.P249S	ENST00000373129	NM_032017.1	249	Ccg/Tcg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31493321	31493322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1330233722		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	48	301	0	ENST00000344624.3:c.1834dup	p.Leu612ProfsTer8	p.L612Pfs*8	ENST00000344624		612	ctg/cCtg																																																																														
HRAS	3265	MSKCC	GRCh37	11	533536	533536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369106578		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	158	698	2	ENST00000311189.7:c.367C>T	p.Arg123Cys	p.R123C	ENST00000311189		123	Cgc/Tgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946996	71946996	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs754591389		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	199	818	1	ENST00000298229.2:c.2845C>T	p.Arg949Ter	p.R949*	ENST00000298229	NM_001567.3	949	Cga/Tga																																																																														
IRF4	3662	MSKCC	GRCh37	6	394891	394891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	52	459	0	ENST00000380956.4:c.287G>A	p.Arg96His	p.R96H	ENST00000380956	NM_001195286.1	96	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023993	27023993	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs932715321		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	17	97	0	ENST00000324856.7:c.1099A>G	p.Ser367Gly	p.S367G	ENST00000324856	NM_006015.4	367	Agc/Ggc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138881	64138881	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	104	563	0	ENST00000334205.4:c.2248A>G	p.Asn750Asp	p.N750D	ENST00000334205	NM_003942.2	750	Aac/Gac																																																																														
MRE11A	0	MSKCC	GRCh37	11	94209522	94209523	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	40	292	0	ENST00000323929.3:c.591dup	p.Val198SerfsTer10	p.V198Sfs*10	ENST00000323929	NM_005591.3	197	-/A																																																																														
PGR	5241	MSKCC	GRCh37	11	100999273	100999273	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767280663		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	126	756	1	ENST00000325455.5:c.529G>A	p.Gly177Arg	p.G177R	ENST00000325455	NM_001202474.3	177	Ggg/Agg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201943	102201943	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	29	218	0	ENST00000263464.3:c.1295G>T	p.Arg432Ile	p.R432I	ENST00000263464	NM_001165.4	432	aGa/aTa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	427572	427572	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	63	389	0	ENST00000399788.2:c.2597A>G	p.Asp866Gly	p.D866G	ENST00000399788	NM_001042603.1	866	gAt/gGt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491370	18491372	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	54	170	0	ENST00000266497.5:c.1286_1288del	p.Asn429del	p.N429del	ENST00000266497		428	tATAat/tat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125084	46125084	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	38	176	0	ENST00000334344.6:c.271C>T	p.Gln91Ter	p.Q91*	ENST00000334344	NM_152641.2	91	Cag/Tag																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554314	81554314	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	67	346	0	ENST00000298171.2:c.334A>T	p.Arg112Trp	p.R112W	ENST00000298171	NM_000369.2	112	Agg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992904	72992904	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs778464341		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	158	656	0	ENST00000268489.5:c.1141G>T	p.Ala381Ser	p.A381S	ENST00000268489	NM_006885.3	381	Gcg/Tcg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884014	37884014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	168	678	0	ENST00000269571.5:c.3485C>T	p.Pro1162Leu	p.P1162L	ENST00000269571		1162	cCt/cTt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533066	63533066	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	112	572	0	ENST00000307078.5:c.1828del	p.Arg610GlyfsTer79	p.R610Gfs*79	ENST00000307078	NM_004655.3	610	Cgg/gg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218786	36218786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	136	641	0	ENST00000222270.7:c.4397G>T	p.Ser1466Ile	p.S1466I	ENST00000222270	NM_014727.1	1466	aGc/aTc																																																																														
REL	5966	MSKCC	GRCh37	2	61121668	61121668	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373752427		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	36	299	0	ENST00000295025.8:c.290G>A	p.Arg97His	p.R97H	ENST00000295025	NM_002908.2	97	cGc/cAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266493	41266493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	73	340	0	ENST00000349496.5:c.290C>A	p.Ala97Asp	p.A97D	ENST00000349496	NM_001904.3	97	gCt/gAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125290	47125290	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	32	356	1	ENST00000409792.3:c.5980del	p.Arg1994GlyfsTer12	p.R1994Gfs*12	ENST00000409792	NM_014159.6	1994	Agg/gg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71015104	71015104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757539300		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	69	313	0	ENST00000318789.4:c.1826C>T	p.Ala609Val	p.A609V	ENST00000318789	NM_032682.5	609	gCa/gTa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149440513	149440515	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	113	608	0	ENST00000286301.3:c.1879_1881del	p.Lys627del	p.K627del	ENST00000286301	NM_005211.3	627	AAG/-																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675522	30675523	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	122	666	0	ENST00000376406.3:c.2833_2834del	p.Asp945TyrfsTer70	p.D945Yfs*70	ENST00000376406	NM_014641.2	945	GAt/t																																																																														
FYN	2534	MSKCC	GRCh37	6	111995801	111995802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	26	404	0	ENST00000368678.4:c.1296dup	p.Glu433ArgfsTer13	p.E433Rfs*13	ENST00000368678		432	-/C																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419998	152419998	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	83	573	0	ENST00000206249.3:c.1685A>C	p.Glu562Ala	p.E562A	ENST00000206249	NM_000125.3	562	gAg/gCg																																																																														
PARK2	0	MSKCC	GRCh37	6	162394441	162394442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	44	286	0	ENST00000366898.1:c.626dup	p.Phe210LeufsTer2	p.F210Lfs*2	ENST00000366898	NM_004562.2	209	ttc/ttTc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772594	135772594	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	67	464	0	ENST00000298552.3:c.2952A>C	p.Glu984Asp	p.E984D	ENST00000298552	NM_001162426.1	984	gaA/gaC																																																																														
MED12	9968	MSKCC	GRCh37	X	70339930	70339930	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866469400		P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	51	463	1	ENST00000374080.3:c.463C>T	p.Arg155Trp	p.R155W	ENST00000374080		155	Cgg/Tgg																																																																														
MED12	9968	MSKCC	GRCh37	X	70342401	70342401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	71	542	1	ENST00000374080.3:c.1292G>A	p.Arg431Gln	p.R431Q	ENST00000374080		431	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	50	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	135	559	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593532	48593532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	37	180	0	ENST00000342988.3:c.1283A>C	p.Lys428Thr	p.K428T	ENST00000342988	NM_005359.5	428	aAg/aCg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	72	283	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459759	149459759	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374166176		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	120	618	1	ENST00000286301.3:c.448C>T	p.Arg150Cys	p.R150C	ENST00000286301	NM_005211.3	150	Cgc/Tgc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927989	49927989	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374259168		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	122	554	0	ENST00000296474.3:c.3739G>A	p.Ala1247Thr	p.A1247T	ENST00000296474	NM_002447.2	1247	Gct/Act																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554476	63554476	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1186148018		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	94	476	0	ENST00000307078.5:c.263A>G	p.Asp88Gly	p.D88G	ENST00000307078	NM_004655.3	88	gAt/gGt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622174	1622174	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756170287		P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	113	604	0	ENST00000344749.5:c.701C>T	p.Ala234Val	p.A234V	ENST00000344749	NM_001136139.2	234	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175974	112175974	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	40	180	0	ENST00000257430.4:c.4684del	p.Asp1562ThrfsTer3	p.D1562Tfs*3	ENST00000257430	NM_000038.5	1561	aaG/aa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371718	55371718	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	100	504	0	ENST00000297316.4:c.408del	p.Lys136AsnfsTer10	p.K136Nfs*10	ENST00000297316	NM_022454.3	136	aaG/aa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566342	141566342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	67	319	0	ENST00000220592.5:c.1070C>T	p.Thr357Met	p.T357M	ENST00000220592	NM_012154.3	357	aCg/aTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412987	63412987	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	117	716	0	ENST00000330258.3:c.180del	p.Phe60LeufsTer40	p.F60Lfs*40	ENST00000330258	NM_152424.3	60	ttT/tt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	139	341	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	456	567	0	ENST00000269305.4:c.583dup	p.Ile195AsnfsTer14	p.I195Nfs*14	ENST00000269305	NM_001126112.2	195	atc/aAtc																																																																														
RB1	5925	MSKCC	GRCh37	13	48954321	48954321	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	91	223	0	ENST00000267163.4:c.1446del	p.His483IlefsTer12	p.H483Ifs*12	ENST00000267163	NM_000321.2	481	aTt/at																																																																														
APC	324	MSKCC	GRCh37	5	112176018	112176018	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	103	223	0	ENST00000257430.4:c.4728del	p.Glu1577AsnfsTer73	p.E1577Nfs*73	ENST00000257430	NM_000038.5	1576	gAa/ga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549031	21549031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	73	208	0	ENST00000382592.4:c.3245G>T	p.Gly1082Val	p.G1082V	ENST00000382592	NM_014572.2	1082	gGc/gTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292418	15292418	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	264	719	0	ENST00000263388.2:c.2761T>G	p.Cys921Gly	p.C921G	ENST00000263388	NM_000435.2	921	Tgc/Ggc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32171922	32171922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	291	352	0	ENST00000375023.3:c.3110G>A	p.Gly1037Glu	p.G1037E	ENST00000375023	NM_004557.3	1037	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	147	511	9	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0040110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	145	354	4	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	103	493	6	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134335	2134335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	91	716	5	ENST00000219476.3:c.4112C>T	p.Ser1371Phe	p.S1371F	ENST00000219476	NM_000548.3	1371	tCt/tTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106251	27106251	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	144	517	8	ENST00000324856.7:c.5863del	p.Leu1955Ter	p.L1955*	ENST00000324856	NM_006015.4	1954	atC/at																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123256095	123256095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	79	461	2	ENST00000358487.5:c.1814C>T	p.Ser605Leu	p.S605L	ENST00000358487	NM_000141.4	605	tCa/tTa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672315	86672315	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	150	295	1	ENST00000274376.6:c.2117T>A	p.Leu706Gln	p.L706Q	ENST00000274376	NM_002890.2	706	cTg/cAg																																																																														
MED12	9968	MSKCC	GRCh37	X	70350032	70350032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	33	438	5	ENST00000374080.3:c.4015C>T	p.Pro1339Ser	p.P1339S	ENST00000374080		1339	Ccc/Tcc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913474		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	116	428	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374292	138374292	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	90	448	0	ENST00000289153.2:c.3152A>G	p.Glu1051Gly	p.E1051G	ENST00000289153	NM_006219.2	1051	gAa/gGa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368201444		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	85	365	0	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	51	333	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	16	69	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	37	288	2	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	317	583	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	245	555	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	220	509	3	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	69	279	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
RARA	5914	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	158	506	2	ENST00000254066.5:c.1319del	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957464	175957465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	37	362	0	ENST00000367669.3:c.1931dup	p.Asn644LysfsTer17	p.N644Kfs*17	ENST00000367669	NM_022457.5	644	aac/aaAc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655428	45655428	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372772395		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	221	497	2	ENST00000407780.3:c.424G>A	p.Val142Ile	p.V142I	ENST00000407780	NM_001283052.1	142	Gtc/Atc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	78	427	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448408	49448408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs797045661		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	215	504	2	ENST00000301067.7:c.303del	p.Ser102AlafsTer28	p.S102Afs*28	ENST00000301067	NM_003482.3	101	ggG/gg																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225609	26225609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	33	393	0	ENST00000360408.1:c.227C>T	p.Ala76Val	p.A76V	ENST00000360408	NM_003532.2	76	gCt/gTt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67462920	67462920	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202094530		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	119	422	0	ENST00000327367.4:c.636G>A	p.Met212Ile	p.M212I	ENST00000327367	NM_005902.3	212	atG/atA																																																																														
MYC	4609	MSKCC	GRCh37	8	128753139	128753139	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	95	291	0	ENST00000377970.2:c.1300T>G	p.Leu434Val	p.L434V	ENST00000377970	NM_002467.4	434	Ttg/Gtg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784098	120784098	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	257	579	0	ENST00000257552.2:c.887del	p.Pro296LeufsTer57	p.P296Lfs*57	ENST00000257552	NM_002442.3	296	cCt/ct																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51436050	51436050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	106	285	1	ENST00000262662.1:c.10C>T	p.Pro4Ser	p.P4S	ENST00000262662		4	Cct/Tct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717697	89717698	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	51	377	0	ENST00000371953.3:c.723_724insCT	p.Glu242LeufsTer15	p.E242Lfs*15	ENST00000371953	NM_000314.4	241	ttt/ttTCt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325025	123325025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	152	460	0	ENST00000358487.5:c.303C>A	p.Asp101Glu	p.D101E	ENST00000358487	NM_000141.4	101	gaC/gaA																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742468	17742468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	203	521	1	ENST00000250003.3:c.650C>T	p.Pro217Leu	p.P217L	ENST00000250003	NM_002478.4	217	cCg/cTg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742822	17742822	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1245243056		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	250	606	0	ENST00000250003.3:c.730G>A	p.Ala244Thr	p.A244T	ENST00000250003	NM_002478.4	244	Gcg/Acg																																																																														
RAD52	5893	MSKCC	GRCh37	12	1039247	1039247	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	143	435	0	ENST00000358495.3:c.250T>C	p.Trp84Arg	p.W84R	ENST00000358495	NM_134424.2	84	Tgg/Cgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378595	25378595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	35	327	0	ENST00000256078.4:c.403A>G	p.Arg135Gly	p.R135G	ENST00000256078	NM_033360.2	135	Aga/Gga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060844	38060845	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	206	583	0	ENST00000250448.2:c.1144dup	p.His382ProfsTer33	p.H382Pfs*33	ENST00000250448	NM_004496.3	382	cac/cCac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872802	37872802	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	230	527	0	ENST00000269571.5:c.1681T>G	p.Leu561Val	p.L561V	ENST00000269571		561	Ttg/Gtg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63530037	63530037	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	83	374	0	ENST00000307078.5:c.2398A>T	p.Asn800Tyr	p.N800Y	ENST00000307078	NM_004655.3	800	Aat/Tat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216681	36216681	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs750707578		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	209	499	0	ENST00000222270.7:c.3847A>G	p.Ser1283Gly	p.S1283G	ENST00000222270	NM_014727.1	1283	Agc/Ggc																																																																														
AKT2	208	MSKCC	GRCh37	19	40739834	40739834	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	297	549	1	ENST00000392038.2:c.1391T>C	p.Leu464Pro	p.L464P	ENST00000392038	NM_001626.4	464	cTg/cCg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096610	178096610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	11	252	0	ENST00000397062.3:c.721A>G	p.Asn241Asp	p.N241D	ENST00000397062	NM_006164.4	241	Aac/Gac																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62293846	62293846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	177	480	0	ENST00000508582.2:c.415C>A	p.Leu139Met	p.L139M	ENST00000508582		139	Ctg/Atg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672324	86672324	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	45	329	0	ENST00000274376.6:c.2126G>C	p.Arg709Pro	p.R709P	ENST00000274376	NM_002890.2	709	cGa/cCa																																																																														
APC	324	MSKCC	GRCh37	5	112179489	112179489	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	41	318	0	ENST00000257430.4:c.8202del	p.Gly2735GlufsTer4	p.G2735Efs*4	ENST00000257430	NM_000038.5	2733	cAa/ca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151849900	151849900	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773458258		P-0040149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	116	345	0	ENST00000262189.6:c.12416G>A	p.Arg4139Gln	p.R4139Q	ENST00000262189	NM_170606.2	4139	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0040263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	79	286	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	95	301	1	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0040263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	230	356	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266611	198266611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs755415626		P-0040263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	91	302	0	ENST00000335508.6:c.2225G>A	p.Gly742Asp	p.G742D	ENST00000335508	NM_012433.2	742	gGt/gAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41568574	41568574	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	168	462	0	ENST00000263253.7:c.4524C>G	p.Phe1508Leu	p.F1508L	ENST00000263253	NM_001429.3	1508	ttC/ttG																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163863	32163863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	205	606	0	ENST00000375023.3:c.5363G>A	p.Gly1788Glu	p.G1788E	ENST00000375023	NM_004557.3	1788	gGg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0040297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	208	900	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
AR	367	MSKCC	GRCh37	X	66766238	66766238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1327366080		P-0040297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	37	203	0	ENST00000374690.3:c.1250C>T	p.Ala417Val	p.A417V	ENST00000374690	NM_000044.3	417	gCg/gTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604769	48604769	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766833269		P-0040297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	57	473	2	ENST00000342988.3:c.1591C>T	p.Arg531Trp	p.R531W	ENST00000342988	NM_005359.5	531	Cgg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643348	52643348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	128	428	0	ENST00000394830.3:c.2548C>T	p.Arg850Ter	p.R850*	ENST00000394830	NM_018313.4	850	Cga/Tga																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975372	13975372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761565850		P-0040297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	112	537	0	ENST00000405192.2:c.515C>T	p.Ser172Leu	p.S172L	ENST00000405192	NM_001163147.1	172	tCg/tTg																																																																														
MCL1	4170	MSKCC	GRCh37	1	150549903	150549908	+	inframe_deletion	In_Frame_Del	DEL	GCCAGC	GCCAGC	-			P-0040297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	42	342	0	ENST00000369026.2:c.996_1001del	p.Leu333_Ala334del	p.L333_A334del	ENST00000369026	NM_021960.4	332	ctGCTGGCt/ctt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944564	71944564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs1164813504		P-0040297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	71	714	0	ENST00000298229.2:c.2120A>G	p.Tyr707Cys	p.Y707C	ENST00000298229	NM_001567.3	707	tAt/tGt																																																																														
FYN	2534	MSKCC	GRCh37	6	112015688	112015688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	63	511	0	ENST00000368678.4:c.1154A>G	p.His385Arg	p.H385R	ENST00000368678		385	cAt/cGt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	181	569	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0040330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	14	257	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189455575	189455575	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs147340040		P-0040330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	62	346	2	ENST00000264731.3:c.109C>T	p.Arg37Ter	p.R37*	ENST00000264731	NM_003722.4	37	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578452	7578453	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCGC			P-0040330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	178	784	0	ENST00000269305.4:c.473_477dup	p.Met160AlafsTer12	p.M160Afs*12	ENST00000269305	NM_001126112.2	159	-/GCGCC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	356	195	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912657		P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	179	445	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141427	11141427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	153	409	0	ENST00000344626.4:c.3404G>A	p.Arg1135Gln	p.R1135Q	ENST00000344626	NM_003072.3	1135	cGg/cAg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932813	39932813	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	179	222	0	ENST00000378444.4:c.1786C>T	p.Gln596Ter	p.Q596*	ENST00000378444	NM_001123385.1	596	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821970	72821970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	68	381	0	ENST00000268489.5:c.10205C>A	p.Pro3402Gln	p.P3402Q	ENST00000268489	NM_006885.3	3402	cCa/cAa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981731	70981731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	83	570	2	ENST00000276594.2:c.365C>T	p.Ala122Val	p.A122V	ENST00000276594	NM_024504.3	122	gCg/gTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76937486	76937486	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	95	131	0	ENST00000373344.5:c.3262G>C	p.Gly1088Arg	p.G1088R	ENST00000373344	NM_000489.3	1088	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	319	493	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807914	3807914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	67	344	0	ENST00000262367.5:c.3505C>T	p.Arg1169Cys	p.R1169C	ENST00000262367	NM_004380.2	1169	Cgc/Tgc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041265	47041265	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	72	454	0	ENST00000329236.7:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000329236	NM_001204466.1	487	Cct/Tct																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004246	150004246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	30	174	0	ENST00000253339.5:c.1979G>A	p.Arg660His	p.R660H	ENST00000253339		660	cGt/cAt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26828860	26828860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	62	303	0	ENST00000381527.3:c.82G>A	p.Gly28Ser	p.G28S	ENST00000381527	NM_001260.1	28	Ggc/Agc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912606	32912606	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	116	288	0	ENST00000380152.3:c.4114T>C	p.Phe1372Leu	p.F1372L	ENST00000380152		1372	Ttt/Ctt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478832	57478832	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	43	260	0	ENST00000371085.3:c.418T>G	p.Phe140Val	p.F140V	ENST00000371085	NM_000516.4	140	Ttt/Gtt																																																																														
APC	324	MSKCC	GRCh37	5	112174517	112174517	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	61	186	0	ENST00000257430.4:c.3227del	p.Pro1076LeufsTer50	p.P1076Lfs*50	ENST00000257430	NM_000038.5	1076	Cct/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs587780070		P-0040410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	345	541	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732941	74732941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	109	123	0	ENST00000359995.5:c.302G>A	p.Ser101Asn	p.S101N	ENST00000359995	NM_001195427.1	101	aGc/aAc																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538967	23538976	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGGTGGGC	CCAGGTGGGC	-			P-0040410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	273	595	0	ENST00000380871.4:c.463_472del	p.Ala155ProfsTer11	p.A155Pfs*11	ENST00000380871	NM_006167.3	155	GCCCACCTGGcc/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	164	390	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0040447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	168	661	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	65	240	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148512041	148512041	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	84	328	1	ENST00000320356.2:c.1637A>T	p.Asn546Ile	p.N546I	ENST00000320356	NM_004456.4	546	aAt/aTt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691945	30691945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	21	332	1	ENST00000359013.4:c.522C>A	p.Phe174Leu	p.F174L	ENST00000359013	NM_001024847.2	174	ttC/ttA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	305	730	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	201	452	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	169	726	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	174	388	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	112	153	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	179	352	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																														
PARK2	0	MSKCC	GRCh37	6	162206908	162206908	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1233588284		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	60	439	0	ENST00000366898.1:c.767G>A	p.Arg256His	p.R256H	ENST00000366898	NM_004562.2	256	cGc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133209250	133209250	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1462887616		P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	332	759	2	ENST00000320574.5:c.6136G>A	p.Gly2046Arg	p.G2046R	ENST00000320574	NM_006231.2	2046	Gga/Aga																																																																														
MGA	23269	MSKCC	GRCh37	15	42042476	42042477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	73	550	0	ENST00000219905.7:c.6672dup	p.Leu2225ThrfsTer8	p.L2225Tfs*8	ENST00000219905	NM_001164273.1	2224	tta/ttAa																																																																														
APC	324	MSKCC	GRCh37	5	112175336	112175337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAAAGCTGTTGA			P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	79	235	0	ENST00000257430.4:c.4047_4059dup	p.Phe1354GlnfsTer4	p.F1354Qfs*4	ENST00000257430	NM_000038.5	1349	cac/cACAAAGCTGTTGAac																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739487	145739487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	209	848	2	ENST00000428558.2:c.1883T>C	p.Leu628Pro	p.L628P	ENST00000428558	NM_004260.3	628	cTt/cCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	116	407	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	273	771	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738280	145738280	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372205013		P-0040494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	306	958	0	ENST00000428558.2:c.2705G>A	p.Arg902Gln	p.R902Q	ENST00000428558	NM_004260.3	902	cGg/cAg																																																																														
ARAF	369	MSKCC	GRCh37	X	47430809	47430809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	182	809	3	ENST00000377045.4:c.1774G>A	p.Asp592Asn	p.D592N	ENST00000377045	NM_001654.4	592	Gat/Aat																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440658	56440661	+	frameshift_variant	Frame_Shift_Del	DEL	TCAA	TCAA	-			P-0040494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	225	734	0	ENST00000407977.2:c.557_560del	p.Ile186SerfsTer2	p.I186Sfs*2	ENST00000407977		186	aTTGAg/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912654		P-0040521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	324	724	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94926596	94926647	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATATTTTAAGACAGATAAACTTACTTCCTTCTCTGGAATAAAGGCACTTGG	TATATTTTAAGACAGATAAACTTACTTCCTTCTCTGGAATAAAGGCACTTGG	-			P-0040521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	50	319	0	ENST00000536441.1:c.118_144+25del		p.X40_splice	ENST00000536441	NM_144665.3	40																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322766	31322979	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGTTAGCCCCTGTGTGCATGCTGCTTCCCAGTAATGAGGCAGGGAACACTTCTACCTGGGGCTTGAAACCCCCAGTGGGACAAGAAAACCCAGACCCCACCCCTCACCCCTTCCCTACCTGAACTCTTCCTCCTACACATCACAGCAGCGACCACAGCTCCGATGACCACAACTGCTAGGACAGCCAGGCCAGCAACAATGCCCACGATGGGGA	CGTTAGCCCCTGTGTGCATGCTGCTTCCCAGTAATGAGGCAGGGAACACTTCTACCTGGGGCTTGAAACCCCCAGTGGGACAAGAAAACCCAGACCCCACCCCTCACCCCTTCCCTACCTGAACTCTTCCTCCTACACATCACAGCAGCGACCACAGCTCCGATGACCACAACTGCTAGGACAGCCAGGCCAGCAACAATGCCCACGATGGGGA	-			P-0040521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	19	182	0	ENST00000412585.2:c.917_1012+118del		p.X306_splice	ENST00000412585	NM_005514.6	306																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323107	31323124	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGGGCTTCGGCAGCCC	GAGGGGCTTCGGCAGCCC	ACAT			P-0040521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	86	712	130	ENST00000412585.2:c.865_882delinsATGT	p.Gly289MetfsTer40	p.G289Mfs*40	ENST00000412585	NM_005514.6	289	GGGCTGCCGAAGCCCCTC/ATGT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	154	561	0				ENST00000310581	NM_198253.2																																																																																
NF2	4771	MSKCC	GRCh37	22	30064418	30064418	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	209	515	0	ENST00000338641.4:c.982G>T	p.Glu328Ter	p.E328*	ENST00000338641	NM_000268.3	328	Gag/Tag																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182002	38182002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772678256		P-0040532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	94	625	1	ENST00000396334.3:c.626G>A	p.Arg209His	p.R209H	ENST00000396334	NM_002468.4	209	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105715	27105715	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	141	456	0	ENST00000324856.7:c.5326G>T	p.Glu1776Ter	p.E1776*	ENST00000324856	NM_006015.4	1776	Gaa/Taa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280107	66280107	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs77407591		P-0040532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	49	349	0	ENST00000273854.3:c.1582G>A	p.Glu528Lys	p.E528K	ENST00000273854	NM_004439.5	528	Gag/Aag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89833608	89833608	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs753223258		P-0040532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	83	427	0	ENST00000389301.3:c.2542T>C	p.Phe848Leu	p.F848L	ENST00000389301	NM_000135.2	848	Ttt/Ctt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89833619	89833619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	71	390	0	ENST00000389301.3:c.2531C>T	p.Ser844Phe	p.S844F	ENST00000389301	NM_000135.2	844	tCt/tTt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372155	55372155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1219111000		P-0040532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	125	799	0	ENST00000297316.4:c.845C>T	p.Ser282Leu	p.S282L	ENST00000297316	NM_022454.3	282	tCg/tTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70344240	70344240	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0040532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	15	181	0	ENST00000374080.3:c.1974+2del		p.X658_splice	ENST00000374080		658																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	58	528	0				ENST00000310581	NM_198253.2																																																																																
IRF4	3662	MSKCC	GRCh37	6	398917	398917	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1356308443		P-0040533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	48	521	0	ENST00000380956.4:c.727G>A	p.Glu243Lys	p.E243K	ENST00000380956	NM_001195286.1	243	Gaa/Aaa																																																																														
FH	2271	MSKCC	GRCh37	1	241682991	241682991	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1226883651		P-0040533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	86	627	0	ENST00000366560.3:c.32C>G	p.Ser11Trp	p.S11W	ENST00000366560	NM_000143.3	11	tCg/tGg																																																																														
ATM	472	MSKCC	GRCh37	11	108224531	108224531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	97	445	0	ENST00000278616.4:c.8710G>C	p.Glu2904Gln	p.E2904Q	ENST00000278616	NM_000051.3	2904	Gag/Cag																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46511637	46511637	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	109	592	0	ENST00000262741.5:c.1140C>G	p.Phe380Leu	p.F380L	ENST00000262741	NM_003629.3	380	ttC/ttG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106271	27106302	+	frameshift_variant	Frame_Shift_Del	DEL	GTAAGGATGAGACCCCACTGTGTACCCTTCTG	GTAAGGATGAGACCCCACTGTGTACCCTTCTG	-			P-0040533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	156	707	0	ENST00000324856.7:c.5883_5914del	p.Ser1961ArgfsTer27	p.S1961Rfs*27	ENST00000324856	NM_006015.4	1961	aGTAAGGATGAGACCCCACTGTGTACCCTTCTG/a																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983018	201983019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	226	995	0	ENST00000359651.3:c.868dup	p.Glu290GlyfsTer11	p.E290Gfs*11	ENST00000359651		289	-/G																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432341	432341	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	74	440	0	ENST00000399788.2:c.2182C>G	p.Leu728Val	p.L728V	ENST00000399788	NM_001042603.1	728	Ctg/Gtg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864474	57864474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	134	828	0	ENST00000228682.2:c.1951C>G	p.Pro651Ala	p.P651A	ENST00000228682	NM_005269.2	651	Cca/Gca																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355171	15355171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	141	1050	0	ENST00000263377.2:c.2452G>C	p.Asp818His	p.D818H	ENST00000263377	NM_058243.2	818	Gac/Cac																																																																														
TP63	8626	MSKCC	GRCh37	3	189582062	189582062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	134	466	0	ENST00000264731.3:c.621G>C	p.Lys207Asn	p.K207N	ENST00000264731	NM_003722.4	207	aaG/aaC																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280127	66280127	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	187	342	0	ENST00000273854.3:c.1562A>C	p.Lys521Thr	p.K521T	ENST00000273854	NM_004439.5	521	aAa/aCa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29913230	29913230	+	stop_lost,splice_region_variant	Nonstop_Mutation	SNP	T	T	G			P-0040533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	165	552	0	ENST00000376809.5:c.1096T>G	p.Ter366GlyextTer8	p.*366Gext*8	ENST00000376809	NM_002116.7	366	Tga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	103	374	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	86	720	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	99	365	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	19	547	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs863225356		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	36	178	0	ENST00000257430.4:c.4634C>G	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tGa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982378	201982379	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	256	755	0	ENST00000359651.3:c.758_759insTT	p.Ser254Ter	p.S254*	ENST00000359651		253	ctg/cTTtg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487911	56487911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762488062		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	51	580	0	ENST00000267101.3:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000267101	NM_001982.3	548	Gaa/Aaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645155	67645155	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	80	550	0	ENST00000264010.4:c.420T>G	p.Asn140Lys	p.N140K	ENST00000264010	NM_006565.3	140	aaT/aaG																																																																														
FLT4	2324	MSKCC	GRCh37	5	180051059	180051059	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs747401546		P-0040550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	65	521	0	ENST00000261937.6:c.1424G>A	p.Arg475Gln	p.R475Q	ENST00000261937	NM_182925.4	475	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	76	413	0				ENST00000310581	NM_198253.2																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52682400	52682400	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	63	292	0	ENST00000394830.3:c.773del	p.Asn258MetfsTer25	p.N258Mfs*25	ENST00000394830	NM_018313.4	258	aAt/at																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71936201	71936201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	95	475	0	ENST00000298229.2:c.173T>C	p.Leu58Pro	p.L58P	ENST00000298229	NM_001567.3	58	cTc/cCc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	68	656	0	ENST00000304494.5:c.387C>G	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	68	656	0	ENST00000304494.5:c.387C>G	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taG																																																																														
TCF3	6929	MSKCC	GRCh37	19	1646407	1646408	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0040583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	135	670	0	ENST00000344749.5:c.91_92insAA	p.Thr31LysfsTer91	p.T31Kfs*91	ENST00000344749	NM_001136139.2	31	acc/aAAcc																																																																														
KIT	3815	MSKCC	GRCh37	4	55573275	55573275	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	42	339	0	ENST00000288135.5:c.937A>G	p.Ile313Val	p.I313V	ENST00000288135	NM_000222.2	313	Att/Gtt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272496	11272496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	184	447	0	ENST00000361445.4:c.3434C>T	p.Ser1145Phe	p.S1145F	ENST00000361445	NM_004958.3	1145	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257320	16257320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	218	504	0	ENST00000375759.3:c.4585C>T	p.Arg1529Cys	p.R1529C	ENST00000375759	NM_015001.2	1529	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106178	27106178	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	168	527	0	ENST00000324856.7:c.5789C>G	p.Ser1930Ter	p.S1930*	ENST00000324856	NM_006015.4	1930	tCa/tGa																																																																														
SESN2	83667	MSKCC	GRCh37	1	28605694	28605694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	110	577	0	ENST00000253063.3:c.1298A>G	p.Glu433Gly	p.E433G	ENST00000253063	NM_031459.4	433	gAg/gGg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932368	36932368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1474949172		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	356	549	0	ENST00000361632.4:c.2101G>A	p.Glu701Lys	p.E701K	ENST00000361632		701	Gag/Aag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458438	120458438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	82	490	0	ENST00000256646.2:c.6907C>T	p.Pro2303Ser	p.P2303S	ENST00000256646	NM_024408.3	2303	Ccc/Tcc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459209	120459209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	239	484	0	ENST00000256646.2:c.6136C>T	p.Pro2046Ser	p.P2046S	ENST00000256646	NM_024408.3	2046	Ccc/Tcc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838389	156838389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1357016517		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	102	627	0	ENST00000524377.1:c.667G>A	p.Glu223Lys	p.E223K	ENST00000524377	NM_002529.3	223	Gag/Aag																																																																														
RFWD2	0	MSKCC	GRCh37	1	176104194	176104194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	63	323	0	ENST00000367669.3:c.920G>A	p.Ser307Asn	p.S307N	ENST00000367669	NM_022457.5	307	aGt/aAt																																																																														
RET	5979	MSKCC	GRCh37	10	43596098	43596098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	93	547	0	ENST00000355710.3:c.265C>T	p.Gln89Ter	p.Q89*	ENST00000355710	NM_020975.4	89	Cag/Tag																																																																														
TET1	80312	MSKCC	GRCh37	10	70405991	70405991	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	69	525	1	ENST00000373644.4:c.3505C>T	p.Gln1169Ter	p.Q1169*	ENST00000373644	NM_030625.2	1169	Caa/Taa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942059	71942059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	300	655	0	ENST00000298229.2:c.1323C>G	p.Asn441Lys	p.N441K	ENST00000298229	NM_001567.3	441	aaC/aaG																																																																														
PAK1	5058	MSKCC	GRCh37	11	77103520	77103520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	63	298	0	ENST00000356341.3:c.46C>T	p.Pro16Ser	p.P16S	ENST00000356341	NM_002576.4	16	Ccg/Tcg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998389	100998403	+	inframe_deletion	In_Frame_Del	DEL	CTGGGGCGGCGCGCC	CTGGGGCGGCGCGCC	-			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	77	144	0	ENST00000325455.5:c.1399_1413del	p.Gly467_Gln471del	p.G467_Q471del	ENST00000325455	NM_001202474.3	467	GGCGCGCCGCCCCAG/-																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344819	118344819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	97	307	0	ENST00000534358.1:c.2945C>T	p.Ser982Phe	p.S982F	ENST00000534358	NM_005933.3	982	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118353184	118353184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	40	256	0	ENST00000534358.1:c.4060C>T	p.Pro1354Ser	p.P1354S	ENST00000534358	NM_005933.3	1354	Cct/Tct																																																																														
KDM5A	5927	MSKCC	GRCh37	12	441059	441059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	152	408	0	ENST00000399788.2:c.1699C>T	p.Pro567Ser	p.P567S	ENST00000399788	NM_001042603.1	567	Cct/Tct																																																																														
CCND2	894	MSKCC	GRCh37	12	4387932	4387932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	55	433	0	ENST00000261254.3:c.418G>A	p.Glu140Lys	p.E140K	ENST00000261254	NM_001759.3	140	Gaa/Aaa																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022646	12022646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	69	419	0	ENST00000396373.4:c.752C>T	p.Ser251Phe	p.S251F	ENST00000396373	NM_001987.4	251	tCc/tTc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022772	12022772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	113	414	0	ENST00000396373.4:c.878C>T	p.Ser293Phe	p.S293F	ENST00000396373	NM_001987.4	293	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435455	18435455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	30	236	0	ENST00000266497.5:c.440C>T	p.Ser147Leu	p.S147L	ENST00000266497		147	tCa/tTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18466994	18466994	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773615749		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	93	299	0	ENST00000266497.5:c.1133G>A	p.Arg378Gln	p.R378Q	ENST00000266497		378	cGa/cAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759658584		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	30	336	0	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244256	46244256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	70	369	0	ENST00000334344.6:c.2350C>T	p.Pro784Ser	p.P784S	ENST00000334344	NM_152641.2	784	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425511	49425511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	436	709	0	ENST00000301067.7:c.12977C>T	p.Pro4326Leu	p.P4326L	ENST00000301067	NM_003482.3	4326	cCc/cTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57857527	57857527	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	97	578	0	ENST00000228682.2:c.53G>T	p.Cys18Phe	p.C18F	ENST00000228682	NM_005269.2	18	tGt/tTt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858925	57858925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	88	605	0	ENST00000228682.2:c.421C>T	p.His141Tyr	p.H141Y	ENST00000228682	NM_005269.2	141	Cac/Tac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859664	57859664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	76	475	0	ENST00000228682.2:c.718G>A	p.Asp240Asn	p.D240N	ENST00000228682	NM_005269.2	240	Gat/Aat																																																																														
CDK4	1019	MSKCC	GRCh37	12	58144849	58144849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	75	433	0	ENST00000257904.6:c.379G>A	p.Gly127Ser	p.G127S	ENST00000257904	NM_000075.3	127	Ggc/Agc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112062	115112062	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1219837774		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	101	601	0	ENST00000257566.3:c.1678G>A	p.Ala560Thr	p.A560T	ENST00000257566	NM_016569.3	560	Gcc/Acc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967641	26967641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	50	297	0	ENST00000381527.3:c.784C>T	p.Pro262Ser	p.P262S	ENST00000381527	NM_001260.1	262	Cct/Tct																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578234	28578234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	88	491	0	ENST00000241453.7:c.2937G>A	p.Met979Ile	p.M979I	ENST00000241453	NM_004119.2	979	atG/atA																																																																														
FLT1	2321	MSKCC	GRCh37	13	28908251	28908251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	122	400	0	ENST00000282397.4:c.2504G>A	p.Arg835Lys	p.R835K	ENST00000282397	NM_002019.4	835	aGa/aAa																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868438023		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	335	638	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675118	40675118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	111	648	0	ENST00000249776.8:c.82C>T	p.Pro28Ser	p.P28S	ENST00000249776	NM_033286.3	28	Ccg/Tcg																																																																														
MGA	23269	MSKCC	GRCh37	15	42002918	42002918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	50	323	0	ENST00000219905.7:c.2455C>T	p.Arg819Cys	p.R819C	ENST00000219905	NM_001164273.1	819	Cgt/Tgt																																																																														
CD276	80381	MSKCC	GRCh37	15	74001997	74001997	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	98	595	0	ENST00000318443.5:c.1513G>C	p.Asp505His	p.D505H	ENST00000318443	NM_001024736.1	505	Gac/Cac																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631934	90631934	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913502		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	223	564	0	ENST00000330062.3:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000330062	NM_002168.2	140	cGg/cAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778674	3778691	+	inframe_deletion	In_Frame_Del	DEL	GGCTGGGACTGGAGGCCA	GGCTGGGACTGGAGGCCA	-			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	136	656	0	ENST00000262367.5:c.6357_6374del	p.Leu2121_Gly2126del	p.L2121_G2126del	ENST00000262367	NM_004380.2	2119	ccTGGCCTCCAGTCCCAGCCc/ccc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857172	9857172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	66	430	0	ENST00000330684.3:c.4229C>T	p.Ser1410Leu	p.S1410L	ENST00000330684	NM_001134407.1	1410	tCg/tTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273929	10273929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	95	657	1	ENST00000330684.3:c.340G>A	p.Asp114Asn	p.D114N	ENST00000330684	NM_001134407.1	114	Gat/Aat																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813746	50813746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	98	589	0	ENST00000398568.2:c.1300C>T	p.Pro434Ser	p.P434S	ENST00000398568	NM_001042412.1	434	Cca/Tca																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350753	89350753	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs886041791		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	72	702	0	ENST00000301030.4:c.2197C>T	p.Arg733Ter	p.R733*	ENST00000301030	NM_001256183.1	733	Cga/Tga																																																																														
FANCA	2175	MSKCC	GRCh37	16	89813063	89813063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	73	558	0	ENST00000389301.3:c.3442C>T	p.Pro1148Ser	p.P1148S	ENST00000389301	NM_000135.2	1148	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577540	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	315	595	1	ENST00000269305.4:c.741_742delinsTT	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	247	aaCCgg/aaTTgg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979560	7979560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	73	573	0	ENST00000319144.4:c.1465G>A	p.Gly489Arg	p.G489R	ENST00000319144	NM_001139.2	489	Ggg/Agg																																																																														
NF1	4763	MSKCC	GRCh37	17	29553491	29553492	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	304	450	0	ENST00000358273.4:c.2040_2041delinsTT	p.Arg681Ter	p.R681*	ENST00000358273	NM_001042492.2	680	tgCCga/tgTTga																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325777	30325777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	45	237	0	ENST00000322652.5:c.1975C>T	p.His659Tyr	p.H659Y	ENST00000322652	NM_015355.2	659	Cat/Tat																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375537	40375537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	139	530	0	ENST00000293328.3:c.413C>T	p.Ser138Phe	p.S138F	ENST00000293328	NM_012448.3	138	tCc/tTc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441907	40441907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	107	754	0	ENST00000345506.4:c.152C>T	p.Pro51Leu	p.P51L	ENST00000345506	NM_003152.3	51	cCc/cTc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40856677	40856677	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs376492983		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	62	377	0	ENST00000428826.2:c.1960C>T	p.Arg654Ter	p.R654*	ENST00000428826		654	Cga/Tga																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780673	56780673	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751528808		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	87	380	0	ENST00000337432.4:c.688C>T	p.Leu230Phe	p.L230F	ENST00000337432	NM_058216.2	230	Ctt/Ttt																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526135	66526135	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	46	299	0	ENST00000358598.2:c.966T>A	p.Asp322Glu	p.D322E	ENST00000358598	NM_212471.2	322	gaT/gaA																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222472	2222472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	75	566	0	ENST00000398665.3:c.3304G>A	p.Gly1102Ser	p.G1102S	ENST00000398665	NM_032482.2	1102	Ggc/Agc																																																																														
INSR	3643	MSKCC	GRCh37	19	7267775	7267775	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	84	536	0	ENST00000302850.5:c.233T>C	p.Phe78Ser	p.F78S	ENST00000302850	NM_000208.2	78	tTc/tCc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290058	15290058	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770044132		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	74	644	0	ENST00000263388.2:c.3496C>T	p.Pro1166Ser	p.P1166S	ENST00000263388	NM_000435.2	1166	Cca/Tca																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279700	18279700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	53	416	1	ENST00000222254.8:c.1973C>T	p.Ser658Phe	p.S658F	ENST00000222254	NM_005027.3	658	tCc/tTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976432	18976432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	83	694	0	ENST00000262803.5:c.3082C>T	p.Pro1028Ser	p.P1028S	ENST00000262803	NM_002911.3	1028	Cct/Tct																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792646	33792647	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	13	65	0	ENST00000498907.2:c.674_675delinsTT	p.Pro225Leu	p.P225L	ENST00000498907	NM_004364.3	225	cCC/cTT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36215923	36215923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	111	563	0	ENST00000222270.7:c.3463C>T	p.Pro1155Ser	p.P1155S	ENST00000222270	NM_014727.1	1155	Ccc/Tcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223989	36223990	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	194	727	2	ENST00000222270.7:c.6539_6540delinsTT	p.Ala2180Val	p.A2180V	ENST00000222270	NM_014727.1	2180	gCC/gTT																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918082	50918082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	68	564	0	ENST00000440232.2:c.2399C>T	p.Pro800Leu	p.P800L	ENST00000440232	NM_002691.3	800	cCa/cTa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	93	334	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																																																														
XPO1	7514	MSKCC	GRCh37	2	61717801	61717801	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	58	443	0	ENST00000401558.2:c.1998T>A	p.Asp666Glu	p.D666E	ENST00000401558	NM_003400.3	666	gaT/gaA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248617	212248617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765120252		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	86	465	0	ENST00000342788.4:c.3650G>A	p.Gly1217Glu	p.G1217E	ENST00000342788	NM_005235.2	1217	gGa/gAa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660866	227660867	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	119	530	0	ENST00000305123.5:c.2588_2589delinsAT	p.Leu863His	p.L863H	ENST00000305123	NM_005544.2	863	cTG/cAT																																																																														
PAK7	0	MSKCC	GRCh37	20	9543565	9543565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	71	424	0	ENST00000353224.5:c.1589C>T	p.Ala530Val	p.A530V	ENST00000353224	NM_177990.2	530	gCc/gTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546575	9546576	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	120	430	0	ENST00000353224.5:c.1446_1447delinsTT	p.Arg483Trp	p.R483W	ENST00000353224	NM_177990.2	482	ctCCgg/ctTTgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561309	9561309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760330867		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	58	373	0	ENST00000353224.5:c.473C>T	p.Pro158Leu	p.P158L	ENST00000353224	NM_177990.2	158	cCg/cTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024366	31024366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	93	544	0	ENST00000375687.4:c.3851C>T	p.Pro1284Leu	p.P1284L	ENST00000375687	NM_015338.5	1284	cCa/cTa																																																																														
SRC	6714	MSKCC	GRCh37	20	36012615	36012615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	71	279	0	ENST00000358208.4:c.59C>T	p.Pro20Leu	p.P20L	ENST00000358208		20	cCc/cTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980798	40980798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	86	556	0	ENST00000373198.4:c.1688C>T	p.Ser563Phe	p.S563F	ENST00000373198	NM_133170.3	563	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420005	41420005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	80	465	0	ENST00000373198.4:c.316C>T	p.His106Tyr	p.H106Y	ENST00000373198	NM_133170.3	106	Cat/Tat																																																																														
AURKA	6790	MSKCC	GRCh37	20	54945284	54945284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	123	306	0	ENST00000312783.6:c.1142C>A	p.Pro381His	p.P381H	ENST00000312783	NM_198436.1	381	cCc/cAc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12660132	12660132	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1179404518		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	84	410	0	ENST00000251849.4:c.89C>A	p.Pro30His	p.P30H	ENST00000251849	NM_002880.3	30	cCt/cAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164327	47164327	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	51	276	0	ENST00000409792.3:c.1799T>C	p.Leu600Ser	p.L600S	ENST00000409792	NM_014159.6	600	tTa/tCa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164573	47164573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	24	272	0	ENST00000409792.3:c.1553C>T	p.Ser518Phe	p.S518F	ENST00000409792	NM_014159.6	518	tCt/tTt																																																																														
RHOA	387	MSKCC	GRCh37	3	49405915	49405915	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866298036		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	112	585	0	ENST00000418115.1:c.223C>T	p.Pro75Ser	p.P75S	ENST00000418115	NM_001664.2	75	Cca/Tca																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935637	49935637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	69	498	2	ENST00000296474.3:c.1727C>T	p.Pro576Leu	p.P576L	ENST00000296474	NM_002447.2	576	cCc/cTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588752	52588752	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	77	532	0	ENST00000394830.3:c.4276A>T	p.Ile1426Phe	p.I1426F	ENST00000394830	NM_018313.4	1426	Atc/Ttc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1239654517		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	98	380	0	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72897449	72897449	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	45	396	0	ENST00000325599.8:c.43C>G	p.Leu15Val	p.L15V	ENST00000325599	NM_018130.2	15	Ctg/Gtg																																																																														
BCL6	604	MSKCC	GRCh37	3	187443345	187443345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	83	396	1	ENST00000232014.4:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000232014	NM_001130845.1	594	cGa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189526096	189526096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	156	520	0	ENST00000264731.3:c.360G>A	p.Met120Ile	p.M120I	ENST00000264731	NM_003722.4	120	atG/atA																																																																														
WHSC1	0	MSKCC	GRCh37	4	1941432	1941433	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	82	543	0	ENST00000382895.3:c.1808_1809delinsTA	p.Ala603Val	p.A603V	ENST00000382895	NM_133330.2	603	gCT/gTA																																																																														
WHSC1	0	MSKCC	GRCh37	4	1959680	1959680	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868806171		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	39	272	1	ENST00000382895.3:c.2902C>T	p.Arg968Cys	p.R968C	ENST00000382895	NM_133330.2	968	Cgt/Tgt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139714	55139714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267600186		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	53	385	0	ENST00000257290.5:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000257290	NM_006206.4	459	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55984930	55984930	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	75	409	0	ENST00000263923.4:c.199C>T	p.Gln67Ter	p.Q67*	ENST00000263923	NM_002253.2	67	Cag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280068	66280068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	45	271	2	ENST00000273854.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000273854	NM_004439.5	541	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	119	366	0				ENST00000310581	NM_198253.2																																																																																
FLT4	2324	MSKCC	GRCh37	5	180056973	180056974	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	347	705	2	ENST00000261937.6:c.645_646delinsTT	p.Leu216Phe	p.L216F	ENST00000261937	NM_182925.4	215	ttCCtt/ttTTtt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187470	32187470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	78	663	2	ENST00000375023.3:c.1409C>T	p.Ser470Phe	p.S470F	ENST00000375023	NM_004557.3	470	tCc/tTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187546	32187546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	87	583	0	ENST00000375023.3:c.1333C>T	p.Pro445Ser	p.P445S	ENST00000375023	NM_004557.3	445	Ccc/Tcc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821169	32821169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1439343261		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	114	683	1	ENST00000354258.4:c.425C>T	p.Ser142Phe	p.S142F	ENST00000354258	NM_000593.5	142	tCc/tTc																																																																														
SESN1	27244	MSKCC	GRCh37	6	109311890	109311890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	74	512	0	ENST00000436639.2:c.1382G>A	p.Arg461Lys	p.R461K	ENST00000436639	NM_014454.2	461	aGa/aAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522149	157522149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	128	517	1	ENST00000346085.5:c.4421C>T	p.Pro1474Leu	p.P1474L	ENST00000346085	NM_020732.3	1474	cCc/cTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729388	41729388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	102	534	1	ENST00000242208.4:c.1141C>T	p.His381Tyr	p.H381Y	ENST00000242208	NM_002192.2	381	Cat/Tat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221807	55221807	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	203	600	0	ENST00000275493.2:c.851A>C	p.Lys284Thr	p.K284T	ENST00000275493	NM_005228.3	284	aAa/aCa																																																																														
HGF	3082	MSKCC	GRCh37	7	81359060	81359060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	49	368	0	ENST00000222390.5:c.901G>A	p.Glu301Lys	p.E301K	ENST00000222390	NM_000601.4	301	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81381466	81381466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	119	263	0	ENST00000222390.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000222390	NM_000601.4	199	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140434503	140434503	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758134174		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	140	323	0	ENST00000288602.6:c.2195C>T	p.Ser732Phe	p.S732F	ENST00000288602	NM_004333.4	732	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129878	69129878	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	115	298	0	ENST00000288368.4:c.4632A>C	p.Gln1544His	p.Q1544H	ENST00000288368	NM_024870.2	1544	caA/caC																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317926	8317926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	59	349	0	ENST00000356435.5:c.5687C>T	p.Ser1896Phe	p.S1896F	ENST00000356435		1896	tCc/tTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499693	8499693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	84	428	0	ENST00000356435.5:c.2276C>T	p.Pro759Leu	p.P759L	ENST00000356435		759	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528644	8528644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	67	350	0	ENST00000356435.5:c.488T>G	p.Phe163Cys	p.F163C	ENST00000356435		163	tTc/tGc																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915838	127915838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	71	427	0	ENST00000373547.4:c.643C>T	p.Leu215Phe	p.L215F	ENST00000373547	NM_002721.4	215	Ctt/Ttt																																																																														
BTK	695	MSKCC	GRCh37	X	100615124	100615124	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	109	223	0	ENST00000308731.7:c.791T>C	p.Ile264Thr	p.I264T	ENST00000308731	NM_000061.2	264	aTt/aCt																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123499651	123499651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	61	232	0	ENST00000371139.4:c.178G>A	p.Glu60Lys	p.E60K	ENST00000371139	NM_001114937.2	60	Gaa/Aaa																																																																														
FAM58A	0	MSKCC	GRCh37	X	152859948	152860038	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAACAGAGACCATGGCTTGAGCCTCTCCAAACAGGCACCAGTTCCCCAGTATGTACCTTGTGTGGATGCTGGAAGGAGACCTGGAAGCGC	AGAACAGAGACCATGGCTTGAGCCTCTCCAAACAGGCACCAGTTCCCCAGTATGTACCTTGTGTGGATGCTGGAAGGAGACCTGGAAGCGC	-			P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	85	98	0	ENST00000406277.2:c.390_423+57del		p.X130_splice	ENST00000406277	NM_152274.4	130																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223989	36223989	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868077834		P-0040623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	194	725	1	ENST00000222270.7:c.6539C>T	p.Ala2180Val	p.A2180V	ENST00000222270	NM_014727.1	2180	gCc/gTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0040677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	37	60	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913492		P-0040677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	55	82	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416114	49416114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	86	545	0	ENST00000301067.7:c.16361G>A	p.Arg5454Gln	p.R5454Q	ENST00000301067	NM_003482.3	5454	cGa/cAa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21620140	21620140	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767021401		P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	105	597	0	ENST00000382592.4:c.26C>T	p.Thr9Met	p.T9M	ENST00000382592	NM_014572.2	9	aCg/aTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3645656	3645656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	40	853	1	ENST00000294008.3:c.1963T>C	p.Phe655Leu	p.F655L	ENST00000294008	NM_032444.2	655	Ttt/Ctt																																																																														
CDH1	999	MSKCC	GRCh37	16	68867293	68867293	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	424	638	0	ENST00000261769.5:c.2542del	p.Leu848Ter	p.L848*	ENST00000261769	NM_004360.3	847	tCc/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576918	7576924	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGGGCAG	TGGGCAG	-			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	288	746	0	ENST00000269305.4:c.922_928del	p.Leu308ThrfsTer35	p.L308Tfs*35	ENST00000269305	NM_001126112.2	308	CTGCCCAac/ac																																																																														
NF1	4763	MSKCC	GRCh37	17	29556101	29556101	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	28	243	0	ENST00000358273.4:c.2468G>C	p.Gly823Ala	p.G823A	ENST00000358273	NM_001042492.2	823	gGa/gCa																																																																														
APC	324	MSKCC	GRCh37	5	112175352	112175359	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCTTCA	TTTCTTCA	-			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	40	286	0	ENST00000257430.4:c.4061_4068del	p.Phe1354TrpfsTer18	p.F1354Wfs*18	ENST00000257430	NM_000038.5	1354	tTTTCTTCA/t																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87366972	87366972	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	50	673	0	ENST00000277120.3:c.1368G>C	p.Leu456Phe	p.L456F	ENST00000277120		456	ttG/ttC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0040784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	379	396	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180040101	180040101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909652		P-0040784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	270	304	1	ENST00000261937.6:c.3341C>T	p.Pro1114Leu	p.P1114L	ENST00000261937	NM_182925.4	1114	cCg/cTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552641	18552641	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	90	290	0	ENST00000266497.5:c.2052C>A	p.Cys684Ter	p.C684*	ENST00000266497		684	tgC/tgA																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913250		P-0040846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	880	372	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11291029	11291029	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	155	486	0	ENST00000361445.4:c.2732A>T	p.Asp911Val	p.D911V	ENST00000361445	NM_004958.3	911	gAt/gTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29587481	29587481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs864622348		P-0040846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	50	513	1	ENST00000358273.4:c.4525C>T	p.Arg1509Cys	p.R1509C	ENST00000358273	NM_001042492.2	1509	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	193	727	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670777	134670777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	61	576	0	ENST00000398015.3:c.688G>A	p.Glu230Lys	p.E230K	ENST00000398015	NM_004441.4	230	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	51	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0040895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	52	519	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
CALR	811	MSKCC	GRCh37	19	13050956	13050957	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	31	397	0	ENST00000316448.5:c.488dup	p.Cys163TrpfsTer4	p.C163Wfs*4	ENST00000316448	NM_004343.3	163	tgc/tGgc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598910	28598910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758133085		P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	76	689	0	ENST00000253063.3:c.470G>A	p.Arg157His	p.R157H	ENST00000253063	NM_031459.4	157	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	104	395	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782329		P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	168	626	1	ENST00000269305.4:c.746G>A	p.Arg249Lys	p.R249K	ENST00000269305	NM_001126112.2	249	aGg/aAg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372153	45372153	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	42	432	0	ENST00000262160.6:c.1016A>T	p.Tyr339Phe	p.Y339F	ENST00000262160	NM_005901.5	339	tAc/tTc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010496	48010496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34014629		P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	52	559	0	ENST00000234420.5:c.124C>T	p.Pro42Ser	p.P42S	ENST00000234420	NM_000179.2	42	Cct/Tct																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749443	41749443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	62	507	0	ENST00000226382.2:c.352G>A	p.Ala118Thr	p.A118T	ENST00000226382	NM_003924.3	118	Gcg/Acg																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	63	443	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174461	112174461	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	32	304	0	ENST00000257430.4:c.3171del	p.Asp1058MetfsTer3	p.D1058Mfs*3	ENST00000257430	NM_000038.5	1057	gAa/ga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527925	157527925	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	67	541	0	ENST00000346085.5:c.5650del	p.Arg1884GlyfsTer90	p.R1884Gfs*90	ENST00000346085	NM_020732.3	1884	Cgg/gg																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199469669		P-0040917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	88	327	0	ENST00000374080.3:c.130G>T	p.Gly44Cys	p.G44C	ENST00000374080		44	Ggt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0040951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	78	634	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577075	7577075	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	128	1050	0	ENST00000269305.4:c.863del	p.Asn288IlefsTer57	p.N288Ifs*57	ENST00000269305	NM_001126112.2	288	aAt/at																																																																														
MLH1	4292	MSKCC	GRCh37	3	37089064	37089064	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1173853120		P-0040951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	90	514	0	ENST00000231790.2:c.1786G>A	p.Gly596Ser	p.G596S	ENST00000231790	NM_000249.3	596	Ggc/Agc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38981986	38981986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	62	517	0	ENST00000357387.3:c.736G>A	p.Ala246Thr	p.A246T	ENST00000357387	NM_152756.3	246	Gct/Act																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992683	68992683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	127	531	0	ENST00000288368.4:c.1648G>C	p.Glu550Gln	p.E550Q	ENST00000288368	NM_024870.2	550	Gaa/Caa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577439	64577460	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAAATGCTCCACGAAGCCCA	AGAAAATGCTCCACGAAGCCCA	-			P-0040973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	340	701	0	ENST00000337652.1:c.122_143del	p.Leu41ArgfsTer71	p.L41Rfs*71	ENST00000337652	NM_130803.2	41	cTGGGCTTCGTGGAGCATTTTCTg/cg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545575	106545575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	36	383	0	ENST00000359195.3:c.3052C>G	p.Leu1018Val	p.L1018V	ENST00000359195	NM_002649.2	1018	Cta/Gta																																																																														
ATRX	546	MSKCC	GRCh37	X	76939408	76939408	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	10	324	0	ENST00000373344.5:c.1340A>C	p.Glu447Ala	p.E447A	ENST00000373344	NM_000489.3	447	gAa/gCa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777114	9777114	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs754116182		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	291	868	2	ENST00000377346.4:c.883del	p.Gln295ArgfsTer39	p.Q295Rfs*39	ENST00000377346	NM_005026.3	293	gCc/gc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780884	9780884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	183	886	0	ENST00000377346.4:c.1606C>T	p.His536Tyr	p.H536Y	ENST00000377346	NM_005026.3	536	Cat/Tat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187758	11187758	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	209	651	0	ENST00000361445.4:c.6139A>G	p.Met2047Val	p.M2047V	ENST00000361445	NM_004958.3	2047	Atg/Gtg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099089	27099089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	148	473	0	ENST00000324856.7:c.3505C>T	p.Pro1169Ser	p.P1169S	ENST00000324856	NM_006015.4	1169	Cca/Tca																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797213	45797213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	198	739	0	ENST00000372115.3:c.1160T>C	p.Leu387Pro	p.L387P	ENST00000372115	NM_001048171.1	387	cTg/cCg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46726564	46726564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	140	555	0	ENST00000371975.4:c.643G>A	p.Val215Met	p.V215M	ENST00000371975	NM_003579.3	215	Gtg/Atg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78414949	78414949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	147	446	0	ENST00000370768.2:c.1817G>A	p.Gly606Asp	p.G606D	ENST00000370768	NM_003902.3	606	gGt/gAt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115275287	115275287	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs746569183		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	193	613	0	ENST00000438362.2:c.1126C>T	p.Arg376Ter	p.R376*	ENST00000438362	NM_001242891.1	376	Cga/Tga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	51	247	0	ENST00000367435.3:c.440G>A	p.Arg147His	p.R147H	ENST00000367435	NM_024529.4	147	cGc/cAc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246091265	246091265	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777672375		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	203	538	0	ENST00000388985.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000388985		224	Cga/Tga																																																																														
TET1	80312	MSKCC	GRCh37	10	70412322	70412322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	100	317	0	ENST00000373644.4:c.4432A>G	p.Ser1478Gly	p.S1478G	ENST00000373644	NM_030625.2	1478	Agc/Ggc																																																																														
TET1	80312	MSKCC	GRCh37	10	70426854	70426854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1288019869		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	140	370	0	ENST00000373644.4:c.4514G>A	p.Arg1505His	p.R1505H	ENST00000373644	NM_030625.2	1505	cGt/cAt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88651979	88651979	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	82	337	0	ENST00000372037.3:c.326A>G	p.Gln109Arg	p.Q109R	ENST00000372037	NM_004329.2	109	cAg/cGg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683228	88683228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876658515		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	165	501	0	ENST00000372037.3:c.1438C>T	p.Arg480Trp	p.R480W	ENST00000372037	NM_004329.2	480	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720712	89720712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	41	123	0	ENST00000371953.3:c.867del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	288	gAa/ga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	90	308	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123263395	123263395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs536181987		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	157	430	1	ENST00000358487.5:c.1348C>T	p.Arg450Cys	p.R450C	ENST00000358487	NM_000141.4	450	Cgc/Tgc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742951	17742951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1332082680		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	227	793	0	ENST00000250003.3:c.859G>A	p.Ala287Thr	p.A287T	ENST00000250003	NM_002478.4	287	Gcc/Acc																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518449	69518449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs912723093		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	127	302	0	ENST00000294312.3:c.196G>A	p.Gly66Ser	p.G66S	ENST00000294312	NM_005117.2	66	Ggc/Agc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941273	71941273	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753375974		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	268	833	0	ENST00000298229.2:c.1048C>T	p.Arg350Trp	p.R350W	ENST00000298229	NM_001567.3	350	Cgg/Tgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946486	71946486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	174	633	1	ENST00000298229.2:c.2650C>T	p.Arg884Trp	p.R884W	ENST00000298229	NM_001567.3	884	Cgg/Tgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs749079348		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	273	1002	5	ENST00000298229.2:c.2927dup	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	420215	420215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	99	357	0	ENST00000399788.2:c.3052G>A	p.Ala1018Thr	p.A1018T	ENST00000399788	NM_001042603.1	1018	Gct/Act																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491390	18491390	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1377942847		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	94	272	0	ENST00000266497.5:c.1309del	p.Ile437TyrfsTer5	p.I437Yfs*5	ENST00000266497		435	Aaa/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	105	471	2	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446755	49446755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs564617479		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	190	624	1	ENST00000301067.7:c.1055C>T	p.Ala352Val	p.A352V	ENST00000301067	NM_003482.3	352	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447841	49447841	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748834953		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	220	668	0	ENST00000301067.7:c.593C>T	p.Ala198Val	p.A198V	ENST00000301067	NM_003482.3	198	gCg/gTg																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50482355	50482355	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	197	492	1	ENST00000394963.4:c.711del	p.Phe237LeufsTer5	p.F237Lfs*5	ENST00000394963	NM_003076.4	236	Ttt/tt																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233624	69233624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	12	188	0	ENST00000462284.1:c.1489C>T	p.Pro497Ser	p.P497S	ENST00000462284	NM_002392.5	497	Ccc/Tcc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885145	111885145	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	214	621	0	ENST00000341259.2:c.1038del	p.Leu347CysfsTer26	p.L347Cfs*26	ENST00000341259	NM_005475.2	345	Ggg/gg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	212	693	9	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
POLE	5426	MSKCC	GRCh37	12	133238261	133238261	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs935816567		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	116	428	0	ENST00000320574.5:c.2716A>G	p.Thr906Ala	p.T906A	ENST00000320574	NM_006231.2	906	Acc/Gcc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975423	26975423	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	143	404	0	ENST00000381527.3:c.1049A>G	p.Gln350Arg	p.Q350R	ENST00000381527	NM_001260.1	350	cAa/cGa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	75	261	2	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519045	103519045	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751772171		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	175	462	0	ENST00000355739.4:c.2383G>A	p.Ala795Thr	p.A795T	ENST00000355739	NM_000123.3	795	Gcc/Acc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81534643	81534645	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	118	377	1	ENST00000298171.2:c.290_292del	p.Phe97del	p.F97del	ENST00000298171	NM_000369.2	96	tcCTTc/tcc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566220	95566220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767112987		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	177	538	1	ENST00000343455.3:c.4103G>A	p.Arg1368His	p.R1368H	ENST00000343455	NM_177438.2	1368	cGc/cAc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643438	38643438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	180	537	0	ENST00000299084.4:c.908G>T	p.Ser303Ile	p.S303I	ENST00000299084	NM_152594.2	303	aGt/aTt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347139	347139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	287	924	1	ENST00000262320.3:c.1872G>T	p.Glu624Asp	p.E624D	ENST00000262320	NM_003502.3	624	gaG/gaT																																																																														
TSC2	7249	MSKCC	GRCh37	16	2106687	2106687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	258	839	0	ENST00000219476.3:c.691C>A	p.Leu231Met	p.L231M	ENST00000219476	NM_000548.3	231	Ctg/Atg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126130	2126130	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs796053512		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	259	742	0	ENST00000219476.3:c.2701C>T	p.Arg901Cys	p.R901C	ENST00000219476	NM_000548.3	901	Cgc/Tgc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222500	2222500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766165474		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	284	941	0	ENST00000326181.6:c.694C>T	p.Arg232Trp	p.R232W	ENST00000326181	NM_032271.2	232	Cgg/Tgg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	210	731	1	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	142	543	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821707	72821707	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	100	349	0	ENST00000268489.5:c.10468T>G	p.Phe3490Val	p.F3490V	ENST00000268489	NM_006885.3	3490	Ttc/Gtc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357120	89357120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	235	704	0	ENST00000301030.4:c.514C>A	p.Leu172Met	p.L172M	ENST00000301030	NM_001256183.1	172	Ctg/Atg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89831344	89831345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	167	594	0	ENST00000389301.3:c.2730_2731dup	p.Trp911SerfsTer11	p.W911Sfs*11	ENST00000389301	NM_000135.2	911	tgg/tCTgg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990757	7990757	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs925216708		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	154	430	0	ENST00000319144.4:c.4G>A	p.Ala2Thr	p.A2T	ENST00000319144	NM_001139.2	2	Gcc/Acc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961810	15961810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	131	431	0	ENST00000268712.3:c.5985G>T	p.Glu1995Asp	p.E1995D	ENST00000268712	NM_006311.3	1995	gaG/gaT																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619372	37619372	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	98	353	0	ENST00000447079.4:c.1046+2T>C		p.X349_splice	ENST00000447079	NM_015083.1	349																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	194	772	10	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	418	746	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437608	56437608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	178	512	0	ENST00000407977.2:c.854T>C	p.Leu285Pro	p.L285P	ENST00000407977		285	cTa/cCa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740836	58740836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs747668756		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	203	487	0	ENST00000305921.3:c.1741C>T	p.Arg581Ter	p.R581*	ENST00000305921	NM_003620.3	581	Cga/Tga																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372069	45372069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	182	502	0	ENST00000262160.6:c.1100G>A	p.Gly367Asp	p.G367D	ENST00000262160	NM_005901.5	367	gGc/gAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575057	48575057	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	86	274	0	ENST00000342988.3:c.251T>C	p.Val84Ala	p.V84A	ENST00000342988	NM_005359.5	84	gTg/gCg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs766222935		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	175	758	1	ENST00000357368.4:c.3072dup	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274304	5274304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	219	753	0	ENST00000357368.4:c.143del	p.Gly48ValfsTer17	p.G48Vfs*17	ENST00000357368	NM_002850.3	48	gGt/gt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291083	10291084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755889652		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	226	755	6	ENST00000340748.4:c.387dup	p.Lys130GlnfsTer19	p.K130Qfs*19	ENST00000340748		129	-/C																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266930	18266930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755171275		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	212	505	1	ENST00000222254.8:c.241G>A	p.Val81Met	p.V81M	ENST00000222254	NM_005027.3	81	Gtg/Atg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	253	840	2	ENST00000575354.2:c.3743del	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50917060	50917060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139235742		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	303	878	1	ENST00000440232.2:c.2312C>T	p.Ala771Val	p.A771V	ENST00000440232	NM_002691.3	771	gCg/gTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919743	50919743	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs897259743		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	254	860	2	ENST00000440232.2:c.2911G>A	p.Glu971Lys	p.E971K	ENST00000440232	NM_002691.3	971	Gag/Aag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	40	562	4	ENST00000435504.4:c.2333dup	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	126	411	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033789	48033789	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs773763465		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	82	268	0	ENST00000234420.5:c.4000C>T	p.Arg1334Trp	p.R1334W	ENST00000234420	NM_000179.2	1334	Cgg/Tgg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131211	202131211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	101	349	0	ENST00000358485.4:c.179T>C	p.Met60Thr	p.M60T	ENST00000358485	NM_001080125.1	60	aTg/aCg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794881	242794881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190602950		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	277	783	0	ENST00000334409.5:c.328G>A	p.Val110Met	p.V110M	ENST00000334409	NM_005018.2	110	Gtg/Atg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	225	653	2	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	121	340	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
SETD2	29072	MSKCC	GRCh37	3	47139521	47139521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	130	335	0	ENST00000409792.3:c.5066T>C	p.Leu1689Pro	p.L1689P	ENST00000409792	NM_014159.6	1689	cTg/cCg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163933	47163933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	97	286	0	ENST00000409792.3:c.2193C>A	p.Asp731Glu	p.D731E	ENST00000409792	NM_014159.6	731	gaC/gaA																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436395	52436395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	244	758	0	ENST00000460680.1:c.2099G>A	p.Arg700Gln	p.R700Q	ENST00000460680	NM_004656.3	700	cGg/cAg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090656	71090656	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs202064883		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	85	256	0	ENST00000318789.4:c.692T>C	p.Leu231Pro	p.L231P	ENST00000318789	NM_032682.5	231	cTc/cCc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138400844	138400844	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	146	511	0	ENST00000289153.2:c.2469G>T	p.Met823Ile	p.M823I	ENST00000289153	NM_006219.2	823	atG/atT																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664546	138664546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757937453		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	131	239	0	ENST00000330315.3:c.1019C>T	p.Ala340Val	p.A340V	ENST00000330315	NM_023067.3	340	gCg/gTg																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149375074	149375074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	210	910	0	ENST00000360632.3:c.20C>G	p.Pro7Arg	p.P7R	ENST00000360632	NM_015472.4	7	cCc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519942		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	62	298	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155367	185155367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs902931460		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	149	450	1	ENST00000265026.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000265026	NM_004721.4	203	aCg/aTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217231	66217231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	112	389	2	ENST00000273854.3:c.2384G>A	p.Gly795Asp	p.G795D	ENST00000273854	NM_004439.5	795	gGc/gAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	275	551	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
IRF4	3662	MSKCC	GRCh37	6	397112	397112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	104	320	0	ENST00000380956.4:c.497T>C	p.Val166Ala	p.V166A	ENST00000380956	NM_001195286.1	166	gTt/gCt																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324157	31324157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	184	317	0	ENST00000412585.2:c.406G>A	p.Gly136Arg	p.G136R	ENST00000412585	NM_005514.6	136	Ggg/Agg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188832	32188832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	230	760	1	ENST00000375023.3:c.722G>T	p.Arg241Met	p.R241M	ENST00000375023	NM_004557.3	241	aGg/aTg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815865	32815865	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	167	637	0	ENST00000354258.4:c.1751T>C	p.Leu584Pro	p.L584P	ENST00000354258	NM_000593.5	584	cTg/cCg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818296	32818296	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	148	535	0	ENST00000354258.4:c.1231-2A>G		p.X411_splice	ENST00000354258	NM_000593.5	411																																																																															
PIM1	5292	MSKCC	GRCh37	6	37139051	37139051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	202	625	0	ENST00000373509.5:c.391G>A	p.Asp131Asn	p.D131N	ENST00000373509	NM_002648.3	131	Gac/Aac																																																																														
CCND3	896	MSKCC	GRCh37	6	41905033	41905033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	159	508	0	ENST00000372991.4:c.514C>A	p.Arg172Ser	p.R172S	ENST00000372991	NM_001760.3	172	Cgt/Agt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979309	93979309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	103	381	0	ENST00000369303.4:c.1519C>T	p.Pro507Ser	p.P507S	ENST00000369303	NM_004440.3	507	Cca/Tca																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	86	315	2	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137522040	137522041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	75	175	0	ENST00000367739.4:c.838dup	p.Ser280LysfsTer22	p.S280Kfs*22	ENST00000367739	NM_000416.2	280	agc/aAgc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528284	157528284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs749055122		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	245	735	0	ENST00000346085.5:c.6013del	p.Val2005TrpfsTer16	p.V2005Wfs*16	ENST00000346085	NM_020732.3	2003	aaG/aa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762770988		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	197	753	1	ENST00000396946.4:c.1663dup	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026929	6026929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	15	17	0	ENST00000265849.7:c.1467G>T	p.Glu489Asp	p.E489D	ENST00000265849	NM_000535.5	489	gaG/gaT																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441515	6441515	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769283316		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	94	267	0	ENST00000356142.4:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000356142	NM_018890.3	121	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	114	343	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345759	152345760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1064793327		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	77	255	0	ENST00000359321.1:c.810dup	p.Ile271TyrfsTer8	p.I271Yfs*8	ENST00000359321	NM_005431.1	270	-/T																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372066	55372066	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs748768438		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	214	622	0	ENST00000297316.4:c.756C>A	p.Ser252Arg	p.S252R	ENST00000297316	NM_022454.3	252	agC/agA																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978495	70978495	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	29	411	0	ENST00000276594.2:c.1158del	p.Lys387SerfsTer90	p.K387Sfs*90	ENST00000276594	NM_024504.3	386	ggG/gg																																																																														
NBN	4683	MSKCC	GRCh37	8	90958479	90958480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs780235686		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	50	337	1	ENST00000265433.3:c.1958dup	p.Leu654AlafsTer5	p.L654Afs*5	ENST00000265433	NM_002485.4	653	aag/aaAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400023	139400023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	278	842	0	ENST00000277541.6:c.4325del	p.Pro1442ArgfsTer3	p.P1442Rfs*3	ENST00000277541	NM_017617.3	1442	cCg/cg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139794916	139794916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267602174		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	181	557	0	ENST00000247668.2:c.310C>T	p.Pro104Ser	p.P104S	ENST00000247668	NM_021138.3	104	Ccg/Tcg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941830	44941831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	116	288	0	ENST00000377967.4:c.3160dup	p.Arg1054LysfsTer5	p.R1054Kfs*5	ENST00000377967	NM_021140.2	1052	gaa/gAaa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222366	53222366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	236	919	0	ENST00000375401.3:c.4466C>T	p.Ala1489Val	p.A1489V	ENST00000375401	NM_004187.3	1489	gCt/gTt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223419	53223419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370060257		P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	304	864	0	ENST00000375401.3:c.3940C>T	p.Arg1314Trp	p.R1314W	ENST00000375401	NM_004187.3	1314	Cgg/Tgg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	141	672	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
AR	367	MSKCC	GRCh37	X	66766496	66766496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	223	676	1	ENST00000374690.3:c.1508G>T	p.Trp503Leu	p.W503L	ENST00000374690	NM_000044.3	503	tGg/tTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70341463	70341463	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	218	671	0	ENST00000374080.3:c.898T>G	p.Phe300Val	p.F300V	ENST00000374080		300	Ttc/Gtc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993830	72993831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	116	542	1	ENST00000268489.5:c.214_215insG	p.Ser72CysfsTer47	p.S72Cfs*47	ENST00000268489	NM_006885.3	72	tcc/tGcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	258	423	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008300	29008300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	172	237	0	ENST00000282397.4:c.571G>T	p.Gly191Cys	p.G191C	ENST00000282397	NM_002019.4	191	Ggc/Tgc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436002	56436002	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1366537134		P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	693	379	0	ENST00000407977.2:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000407977		379	Cag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438494	52438494	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756443059		P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	329	500	2	ENST00000460680.1:c.1225G>A	p.Val409Met	p.V409M	ENST00000460680	NM_004656.3	409	Gtg/Atg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259996	16260007	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCCAACCAAA	ACTCCAACCAAA	GG			P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	299	564	1	ENST00000375759.3:c.7261_7272delinsGG	p.Thr2421GlyfsTer36	p.T2421Gfs*36	ENST00000375759	NM_015001.2	2421	ACTCCAACCAAA/GG																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867496	45867496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	417	711	0	ENST00000391945.4:c.812T>C	p.Leu271Pro	p.L271P	ENST00000391945	NM_000400.3	271	cTc/cCc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860692	151860692	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs772605130		P-0041027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	251	369	0	ENST00000262189.6:c.9970A>G	p.Thr3324Ala	p.T3324A	ENST00000262189	NM_170606.2	3324	Act/Gct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	118	389	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888189	112888189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507511		P-0041145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	420	608	0	ENST00000351677.2:c.205G>A	p.Glu69Lys	p.E69K	ENST00000351677	NM_002834.3	69	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29557890	29557890	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	123	179	0	ENST00000358273.4:c.3144G>A	p.Trp1048Ter	p.W1048*	ENST00000358273	NM_001042492.2	1048	tgG/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	212	515	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0041151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	92	388	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0041151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	89	427	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0041151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	329	1060	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	498	1038	2	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	22	206	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	54	383	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	32	444	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	112	689	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112174466	112174466	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	51	289	0	ENST00000257430.4:c.3175G>T	p.Glu1059Ter	p.E1059*	ENST00000257430	NM_000038.5	1059	Gaa/Taa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119114	70119114	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	68	385	0	ENST00000245479.2:c.685+1G>A		p.X229_splice	ENST00000245479	NM_000346.3	229																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713411	30713412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	83	550	1	ENST00000359013.4:c.812dup	p.Asp272GlyfsTer11	p.D272Gfs*11	ENST00000359013	NM_001024847.2	271	ctg/cTtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934576		P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	254	853	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711879	89711879	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	134	422	0	ENST00000371953.3:c.497T>A	p.Val166Glu	p.V166E	ENST00000371953	NM_000314.4	166	gTa/gAa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347911	73347911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146500302		P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	218	335	0	ENST00000377767.4:c.1150C>T	p.Arg384Cys	p.R384C	ENST00000377767	NM_014953.3	384	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097641	27097642	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	211	632	0	ENST00000324856.7:c.3232dup	p.Thr1078AsnfsTer27	p.T1078Nfs*27	ENST00000324856	NM_006015.4	1077	gca/gcAa																																																																														
APC	324	MSKCC	GRCh37	5	112174223	112174223	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	121	441	0	ENST00000257430.4:c.2932C>T	p.Gln978Ter	p.Q978*	ENST00000257430	NM_000038.5	978	Caa/Taa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3656682	3656682	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201769293		P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	336	891	0	ENST00000294008.3:c.553G>A	p.Asp185Asn	p.D185N	ENST00000294008	NM_032444.2	185	Gac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112174664	112174664	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	121	438	0	ENST00000257430.4:c.3373del	p.Val1125Ter	p.V1125*	ENST00000257430	NM_000038.5	1125	Gta/ta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	65	212	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	230	619	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
CDH1	999	MSKCC	GRCh37	16	68771344	68771344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	106	264	0	ENST00000261769.5:c.26C>A	p.Ser9Ter	p.S9*	ENST00000261769	NM_004360.3	9	tCg/tAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118350888	118350888	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0041220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	105	332	0	ENST00000534358.1:c.3570-1G>A		p.X1190_splice	ENST00000534358	NM_005933.3	1190																																																																															
RB1	5925	MSKCC	GRCh37	13	48955580	48955580	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587778857		P-0041220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	86	269	0	ENST00000267163.4:c.1695+1G>A		p.X565_splice	ENST00000267163	NM_000321.2	565																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993510	72993510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	289	807	0	ENST00000268489.5:c.535G>A	p.Gly179Ser	p.G179S	ENST00000268489	NM_006885.3	179	Ggc/Agc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626805	14626805	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377706903		P-0041220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	136	617	1	ENST00000254322.2:c.970G>A	p.Glu324Lys	p.E324K	ENST00000254322	NM_006145.1	324	Gaa/Aaa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753271	42753271	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	186	918	0	ENST00000222329.4:c.993C>G	p.Phe331Leu	p.F331L	ENST00000222329	NM_006494.2	331	ttC/ttG																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750667	39750667	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	79	281	0	ENST00000361337.2:c.2067G>C	p.Lys689Asn	p.K689N	ENST00000361337	NM_003286.2	689	aaG/aaC																																																																														
NF2	4771	MSKCC	GRCh37	22	30051582	30051582	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs1064796632		P-0041220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			203	99	296	0	ENST00000338641.4:c.517-1G>A		p.X173_splice	ENST00000338641	NM_000268.3	173																																																																															
RAD50	10111	MSKCC	GRCh37	5	131931326	131931326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	146	467	0	ENST00000265335.6:c.2031C>A	p.Asn677Lys	p.N677K	ENST00000265335		677	aaC/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0041234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	450	603	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108121800	108121800	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0041234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	81	292	0	ENST00000278616.4:c.1607+1G>A		p.X536_splice	ENST00000278616	NM_000051.3	536																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40733268	40733268	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs779305073		P-0041234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	183	541	1	ENST00000373198.4:c.3538T>A	p.Tyr1180Asn	p.Y1180N	ENST00000373198	NM_133170.3	1180	Tac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578546	7578564	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGGAGTACTGTAGGAAG	AGGGGAGTACTGTAGGAAG	-			P-0041235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	201	736	0	ENST00000269305.4:c.376-10_384del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151843697	151843697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151112171		P-0041235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	49	387	0	ENST00000262189.6:c.14018G>A	p.Arg4673His	p.R4673H	ENST00000262189	NM_170606.2	4673	cGc/cAc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9778813	9778813	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1179481484		P-0041235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	136	645	0	ENST00000377346.4:c.1082C>T	p.Ser361Leu	p.S361L	ENST00000377346	NM_005026.3	361	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	112	696	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	82	245	0	ENST00000257430.4:c.4199del	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	37	684	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217680	7217681	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	52	367	0	ENST00000380728.2:c.246_247del	p.Lys83AlafsTer13	p.K83Afs*13	ENST00000380728		82	gaGAag/gaag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603138	48603138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	47	374	0	ENST00000342988.3:c.1439C>T	p.Pro480Leu	p.P480L	ENST00000342988	NM_005359.5	480	cCa/cTa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1625632	1625657	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAGGTCCCCTTCATGCCCGAAGGG	GGGAGGTCCCCTTCATGCCCGAAGGG	-			P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	55	797	0	ENST00000344749.5:c.417_442del	p.Pro140ValfsTer43	p.P140Vfs*43	ENST00000344749	NM_001136139.2	139	tcCCCTTCGGGCATGAAGGGGACCTCCCag/tcag																																																																														
BTK	695	MSKCC	GRCh37	X	100611135	100611135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	41	507	0	ENST00000308731.7:c.1471C>A	p.His491Asn	p.H491N	ENST00000308731	NM_000061.2	491	Cac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	43	239	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	57	445	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	81	227	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	77	286	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	95	223	1	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222435	39222435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	276	561	0	ENST00000402219.2:c.3175G>A	p.Glu1059Lys	p.E1059K	ENST00000402219	NM_005633.3	1059	Gag/Aag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590401	67590402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	57	114	0	ENST00000274335.5:c.1464dup	p.Glu489Ter	p.E489*	ENST00000274335		488	aat/aaTt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821346	32821346	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	280	709	0	ENST00000354258.4:c.248T>A	p.Leu83Gln	p.L83Q	ENST00000354258	NM_000593.5	83	cTg/cAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29559090	29559090	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs1223905930		P-0041326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	44	60	0	ENST00000358273.4:c.3198-1G>A		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2226664	2226664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	83	549	0	ENST00000398665.3:c.4144G>A	p.Glu1382Lys	p.E1382K	ENST00000398665	NM_032482.2	1382	Gag/Aag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442579	52442599	+	inframe_deletion	In_Frame_Del	DEL	GCTCTTCGATCCATTTGAACA	GCTCTTCGATCCATTTGAACA	-			P-0041326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	83	292	0	ENST00000460680.1:c.146_166del	p.Leu49_Glu55del	p.L49_E55del	ENST00000460680	NM_004656.3	49	cTGTTCAAATGGATCGAAGAGCgc/cgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693006	89693009	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAGG	AAGG	-			P-0041432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	131	339	0	ENST00000371953.3:c.490_492+1del		p.X164_splice	ENST00000371953	NM_000314.4	164																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001416	29001416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	750	374	1	ENST00000282397.4:c.1316C>A	p.Pro439Gln	p.P439Q	ENST00000282397	NM_002019.4	439	cCa/cAa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061129	38061130	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0041432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	216	319	0	ENST00000250448.2:c.859_860del	p.Ala287GlnfsTer5	p.A287Qfs*5	ENST00000250448	NM_004496.3	287	GCc/c																																																																														
ALK	238	MSKCC	GRCh37	2	29498066	29498066	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	225	652	0	ENST00000389048.3:c.1940A>G	p.Asn647Ser	p.N647S	ENST00000389048	NM_004304.4	647	aAt/aGt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38975650	38975650	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1333272721		P-0041432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	431	544	0	ENST00000357387.3:c.878G>A	p.Arg293Gln	p.R293Q	ENST00000357387	NM_152756.3	293	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0041455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	62	298	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0041455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	83	455	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711892	89711892	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	89	337	0	ENST00000371953.3:c.510T>G	p.Ser170Arg	p.S170R	ENST00000371953	NM_000314.4	170	agT/agG																																																																														
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	522	910	0	ENST00000269305.4:c.1045del	p.Glu349AsnfsTer21	p.E349Nfs*21	ENST00000269305	NM_001126112.2	349	Gaa/aa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266985	41266985	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	270	498	0	ENST00000349496.5:c.656A>G	p.His219Arg	p.H219R	ENST00000349496	NM_001904.3	219	cAt/cGt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714376	40714376	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	306	557	0	ENST00000373198.4:c.4021A>G	p.Met1341Val	p.M1341V	ENST00000373198	NM_133170.3	1341	Atg/Gtg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730078	41730078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	171	630	0	ENST00000242208.4:c.451G>C	p.Glu151Gln	p.E151Q	ENST00000242208	NM_002192.2	151	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	15	505	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0041547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	42	486	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0041547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	60	606	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466366	120466366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	87	494	0	ENST00000256646.2:c.4753G>T	p.Gly1585Trp	p.G1585W	ENST00000256646	NM_024408.3	1585	Ggg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	113	446	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	16	255	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950726	38950726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370517295		P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	39	219	0	ENST00000357387.3:c.3224G>A	p.Arg1075Gln	p.R1075Q	ENST00000357387	NM_152756.3	1075	cGa/cAa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158636999	158636999	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772534199		P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	308	451	0	ENST00000263640.3:c.181G>A	p.Asp61Asn	p.D61N	ENST00000263640	NM_001105.4	61	Gat/Aat																																																																														
WT1	7490	MSKCC	GRCh37	11	32456254	32456254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756414084		P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	373	505	1	ENST00000332351.3:c.638G>A	p.Arg213His	p.R213H	ENST00000332351	NM_024426.4	213	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	438	602	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42843797	42843798	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	295	417	0	ENST00000398585.3:c.1121_1122del	p.Tyr374Ter	p.Y374*	ENST00000398585	NM_001135099.1	374	tAT/t																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021727	71021727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	172	292	0	ENST00000318789.4:c.1631G>T	p.Arg544Leu	p.R544L	ENST00000318789	NM_032682.5	544	cGa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	11	410	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0041603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	12	455	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0041603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	17	568	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
B2M	567	MSKCC	GRCh37	15	45003749	45003749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368160918		P-0041607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	162	458	0	ENST00000558401.1:c.5C>T	p.Ser2Phe	p.S2F	ENST00000558401	NM_004048.2	2	tCt/tTt																																																																														
EP300	2033	MSKCC	GRCh37	22	41573524	41573524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	82	852	0	ENST00000263253.7:c.5809G>A	p.Glu1937Lys	p.E1937K	ENST00000263253	NM_001429.3	1937	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs587782272		P-0041607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	163	676	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953930	131953930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	23	342	1	ENST00000265335.6:c.3333G>A	p.Met1111Ile	p.M1111I	ENST00000265335		1111	atG/atA																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	416	571	0	ENST00000267101.3:c.1166C>T	p.Thr389Ile	p.T389I	ENST00000267101	NM_001982.3	389	aCa/aTa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193121523	193121523	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	61	275	0	ENST00000367435.3:c.921C>G	p.Phe307Leu	p.F307L	ENST00000367435	NM_024529.4	307	ttC/ttG																																																																														
SESN3	143686	MSKCC	GRCh37	11	94911905	94911905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	108	607	0	ENST00000536441.1:c.1025G>A	p.Gly342Glu	p.G342E	ENST00000536441	NM_144665.3	342	gGa/gAa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252829	10252829	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs548883904		P-0041607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	91	768	1	ENST00000340748.4:c.3136G>A	p.Asp1046Asn	p.D1046N	ENST00000340748		1046	Gac/Aac																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033958	48033958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	28	309	0	ENST00000234420.5:c.4042G>A	p.Glu1348Lys	p.E1348K	ENST00000234420	NM_000179.2	1348	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41573708	41573708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	78	841	1	ENST00000263253.7:c.5993G>T	p.Gly1998Val	p.G1998V	ENST00000263253	NM_001429.3	1998	gGa/gTa																																																																														
STK19	8859	MSKCC	GRCh37	6	31948532	31948532	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	24	170	0	ENST00000375331.2:c.1003C>G	p.Leu335Val	p.L335V	ENST00000375331	NM_004197.1	335	Ctc/Gtc																																																																														
SMO	6608	MSKCC	GRCh37	7	128849207	128849207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	105	633	0	ENST00000249373.3:c.1435G>A	p.Glu479Lys	p.E479K	ENST00000249373	NM_005631.4	479	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112174786	112174787	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0041620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	59	233	0	ENST00000257430.4:c.3498_3499del	p.Tyr1166Ter	p.Y1166*	ENST00000257430	NM_000038.5	1165	aaATat/aaat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579344	7579345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	539	738	0	ENST00000269305.4:c.342dup	p.His115AlafsTer34	p.H115Afs*34	ENST00000269305	NM_001126112.2	114	-/G																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117878	70117888	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGGCGGC	GCGCAGGCGGC	-			P-0041620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	82	493	0	ENST00000245479.2:c.353_363del	p.Ala118GlufsTer130	p.A118Efs*130	ENST00000245479	NM_000346.3	116	GCGCAGGCGGCg/g																																																																														
MED12	9968	MSKCC	GRCh37	X	70344220	70344220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	118	309	0	ENST00000374080.3:c.1956C>A	p.Ser652Arg	p.S652R	ENST00000374080		652	agC/agA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578505	7578505	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	421	937	0	ENST00000269305.4:c.425del	p.Pro142LeufsTer28	p.P142Lfs*28	ENST00000269305	NM_001126112.2	142	cCt/ct																																																																														
ATRX	546	MSKCC	GRCh37	X	76872120	76872120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	82	322	0	ENST00000373344.5:c.5527C>T	p.Gln1843Ter	p.Q1843*	ENST00000373344	NM_000489.3	1843	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578179	7578197	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	CAGGCGGCTCATAGGGCAC	CAGGCGGCTCATAGGGCAC	G			P-0041719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	193	715	0	ENST00000269305.4:c.652_670delinsC	p.Val218_Glu224delinsGln	p.V218_E224delinsQ	ENST00000269305	NM_001126112.2	218	GTGCCCTATGAGCCGCCTGag/Cag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0041721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	105	618	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0041721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	85	706	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346328	152346328	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs878854772		P-0041721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	30	523	0	ENST00000359321.1:c.242T>C	p.Ile81Thr	p.I81T	ENST00000359321	NM_005431.1	81	aTt/aCt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	100	209	1				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	48936978	48936978	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	128	478	0	ENST00000267163.4:c.746C>A	p.Ser249Ter	p.S249*	ENST00000267163	NM_000321.2	249	tCa/tAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42042524	42042524	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	68	646	0	ENST00000219905.7:c.6719A>C	p.Glu2240Ala	p.E2240A	ENST00000219905	NM_001164273.1	2240	gAa/gCa																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137522140	137522140	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766163240		P-0041831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	60	240	0	ENST00000367739.4:c.739C>T	p.Leu247Phe	p.L247F	ENST00000367739	NM_000416.2	247	Ctt/Ttt																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137524726	137524734	+	inframe_deletion	In_Frame_Del	DEL	CACAGTACT	CACAGTACT	-			P-0041831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	54	608	0	ENST00000367739.4:c.635_643del	p.Gln212_Val215delinsLeu	p.Q212_V215delinsL	ENST00000367739	NM_000416.2	212	cAGTACTGTGtt/ctt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577094	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCG	CGCCG	T			P-0041831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	279	880	0	ENST00000269305.4:c.844_848delinsA	p.Arg282ThrfsTer62	p.R282Tfs*62	ENST00000269305	NM_001126112.2	282	CGGCGc/Ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0041836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	199	795	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099855	27099855	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1198502333		P-0041836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	123	608	0	ENST00000324856.7:c.3734T>C	p.Phe1245Ser	p.F1245S	ENST00000324856	NM_006015.4	1245	tTc/tCc																																																																														
REL	5966	MSKCC	GRCh37	2	61121634	61121634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	109	501	0	ENST00000295025.8:c.256G>C	p.Asp86His	p.D86H	ENST00000295025	NM_002908.2	86	Gac/Cac																																																																														
BTK	695	MSKCC	GRCh37	X	100608295	100608295	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	83	916	0	ENST00000308731.7:c.1795G>T	p.Glu599Ter	p.E599*	ENST00000308731	NM_000061.2	599	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0041848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	564	692	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	81	448	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252865	36252865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	187	331	0	ENST00000300305.3:c.497G>T	p.Arg166Leu	p.R166L	ENST00000300305		166	cGa/cTa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39262581	39262581	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs397517180		P-0041848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	154	509	0	ENST00000402219.2:c.925G>T	p.Asp309Tyr	p.D309Y	ENST00000402219	NM_005633.3	309	Gat/Tat																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115955	8115956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0041848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	1627	415	0	ENST00000346208.3:c.1304_1305dup	p.Ser436ProfsTer40	p.S436Pfs*40	ENST00000346208		434	cac/caCCc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44913196	44913196	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	83	286	0	ENST00000377967.4:c.871G>T	p.Gly291Ter	p.G291*	ENST00000377967	NM_021140.2	291	Gga/Tga																																																																														
CCNE1	898	MSKCC	GRCh37	19	30312916	30312916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146040933		P-0041848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	198	524	0	ENST00000262643.3:c.719G>A	p.Arg240His	p.R240H	ENST00000262643	NM_001238.2	240	cGt/cAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29654554	29654554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	217	311	0	ENST00000358273.4:c.5306G>A	p.Arg1769Gln	p.R1769Q	ENST00000358273	NM_001042492.2	1769	cGa/cAa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10244895	10244895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	206	798	0	ENST00000340748.4:c.4814C>T	p.Ser1605Leu	p.S1605L	ENST00000340748		1605	tCa/tTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549319	187549319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	143	550	0	ENST00000441802.2:c.4799C>G	p.Ser1600Trp	p.S1600W	ENST00000441802	NM_005245.3	1600	tCg/tGg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950524	38950533	+	frameshift_variant	Frame_Shift_Del	DEL	ATTAAAATCA	ATTAAAATCA	-			P-0041848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	85	474	0	ENST00000357387.3:c.3417_3426del	p.Asp1140IlefsTer17	p.D1140Ifs*17	ENST00000357387	NM_152756.3	1139	gtTGATTTTAAT/gt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	35	454	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579838	7579839	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	AA			P-0041849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	59	725	0	ENST00000269305.4:c.74_74+1insTT	p.Leu26TyrfsTer19	p.L26Yfs*19	ENST00000269305	NM_001126112.2	25	cta/ctTTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144678	55144678	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375434317		P-0041849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	38	373	0	ENST00000257290.5:c.2152C>T	p.Arg718Trp	p.R718W	ENST00000257290	NM_006206.4	718	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	26	426	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	32	639	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0041903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	19	505	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746002	162746002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1056323839		P-0041903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	28	433	1	ENST00000367921.3:c.2125C>T	p.Arg709Ter	p.R709*	ENST00000367921	NM_006182.2	709	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0041903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	29	425	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46727002	46727002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1363172157		P-0041903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	41	581	2	ENST00000371975.4:c.836G>A	p.Arg279His	p.R279H	ENST00000371975	NM_003579.3	279	cGc/cAc																																																																														
VHL	7428	MSKCC	GRCh37	3	10191480	10191480	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913346		P-0041936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	43	310	0	ENST00000256474.2:c.473T>C	p.Leu158Pro	p.L158P	ENST00000256474	NM_000551.3	158	cTg/cCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0041936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	23	309	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023072	27023084	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCCGCCGTGG	GGCCCCGCCGTGG	CA			P-0041936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	12	55	1	ENST00000324856.7:c.178_190delinsCA	p.Gly60GlnfsTer47	p.G60Qfs*47	ENST00000324856	NM_006015.4	60	GGCCCCGCCGTGGgg/CAgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0041966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	175	462	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112175437	112175438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	134	255	0	ENST00000257430.4:c.4147dup	p.Met1383AsnfsTer3	p.M1383Nfs*3	ENST00000257430	NM_000038.5	1382	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7578278	7578293	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGGGGCCAGACCTAA	GAGGGGCCAGACCTAA	-			P-0041966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	185	642	0	ENST00000269305.4:c.560-4_571del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212578283	212578283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1162491783		P-0041966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	93	413	0	ENST00000342788.4:c.974C>T	p.Pro325Leu	p.P325L	ENST00000342788	NM_005235.2	325	cCt/cTt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180036903	180036903	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0041966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	71	599	0	ENST00000261937.6:c.3807+2T>C		p.X1269_splice	ENST00000261937	NM_182925.4	1269																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0041968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	209	588	2	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377024	118377024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781919840		P-0041968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	47	373	0	ENST00000534358.1:c.10417C>T	p.Arg3473Cys	p.R3473C	ENST00000534358	NM_005933.3	3473	Cgt/Tgt																																																																														
TET1	80312	MSKCC	GRCh37	10	70450846	70450846	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	70	460	0	ENST00000373644.4:c.5686G>C	p.Ala1896Pro	p.A1896P	ENST00000373644	NM_030625.2	1896	Gct/Cct																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321193	62321193	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	A	rs1332347156		P-0041968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	248	772	1	ENST00000482936.1:c.2116G>A	p.Gly706Arg	p.G706R	ENST00000482936		706	Gga/Aga																																																																														
EP300	2033	MSKCC	GRCh37	22	41547876	41547876	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	52	412	1	ENST00000263253.7:c.2857A>T	p.Asn953Tyr	p.N953Y	ENST00000263253	NM_001429.3	953	Aat/Tat																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274794	123274794	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913478		P-0041971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	145	506	0	ENST00000358487.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000358487	NM_000141.4	375	tAc/tGc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274786	123274786	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	157	509	0	ENST00000358487.5:c.1132A>G	p.Ile378Val	p.I378V	ENST00000358487	NM_000141.4	378	Ata/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876660807		P-0041972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	122	481	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
CASP8	841	MSKCC	GRCh37	2	202131411	202131411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs777784105		P-0041972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	57	383	1	ENST00000358485.4:c.379C>T	p.Arg127Ter	p.R127*	ENST00000358485	NM_001080125.1	127	Cga/Tga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138445	2138445	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0041972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	79	632	1	ENST00000219476.3:c.5260-2A>G		p.X1754_splice	ENST00000219476	NM_000548.3	1754																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271273	153271274	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATC			P-0041972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	29	141	0	ENST00000281708.4:c.502-1_504dup	p.Lys169AspfsTer10	p.K169Dfs*10	ENST00000281708	NM_033632.3	168	-/GATG																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138201244	138201244	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543704449		P-0041972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	57	383	0	ENST00000237289.4:c.1943C>T	p.Ala648Val	p.A648V	ENST00000237289	NM_001270507.1	648	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0042001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	476	703	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0042001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	142	368	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	105	321	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591902	48591902	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519740		P-0042001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	143	486	0	ENST00000342988.3:c.1065C>A	p.Asp355Glu	p.D355E	ENST00000342988	NM_005359.5	355	gaC/gaA																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	227	470	0	ENST00000543371.1:c.1345del	p.Ala449HisfsTer42	p.A449Hfs*42	ENST00000543371	NM_001198531.1	448	cGg/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0042011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	41	462	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640478	3640478	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373091194		P-0042011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	110	835	0	ENST00000294008.3:c.3161C>T	p.Ser1054Leu	p.S1054L	ENST00000294008	NM_032444.2	1054	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577520	+	inframe_deletion	In_Frame_Del	DEL	TGATGA	TGATGA	-			P-0042011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	86	668	0	ENST00000269305.4:c.761_766del	p.Ile254_Ile255del	p.I254_I255del	ENST00000269305	NM_001126112.2	254	aTCATCAca/aca																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806234	1806234	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781361431		P-0042011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	67	694	1	ENST00000260795.2:c.1253C>T	p.Pro418Leu	p.P418L	ENST00000260795		418	cCg/cTg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459448	50459448	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs761227924		P-0042011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	71	302	0	ENST00000331340.3:c.737A>G	p.His246Arg	p.H246R	ENST00000331340	NM_006060.4	246	cAc/cGc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191763	123191763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	36	476	0	ENST00000218089.9:c.1352G>T	p.Arg451Ile	p.R451I	ENST00000218089	NM_001042749.1	451	aGa/aTa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0042035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	66	445	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137852581		P-0042035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	385	217	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792820	33792820	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	34	247	0	ENST00000498907.2:c.501G>C	p.Glu167Asp	p.E167D	ENST00000498907	NM_004364.3	167	gaG/gaC																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845382	42845382	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs770521585		P-0042035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	118	804	0	ENST00000398585.3:c.880G>C	p.Val294Leu	p.V294L	ENST00000398585	NM_001135099.1	294	Gtg/Ctg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060962	38060979	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCCGTCGCCCCACTGT	TCGCCGTCGCCCCACTGT	GGCCA			P-0042035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	70	545	2	ENST00000250448.2:c.1010_1027delinsTGGCC	p.His337LeufsTer9	p.H337Lfs*9	ENST00000250448	NM_004496.3	337	cACAGTGGGGCGACGGCGAca/cTGGCCca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0042064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	569	939	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0042064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	200	577	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680751	88680751	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201252722		P-0042064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	214	815	0	ENST00000360948.2:c.506G>A	p.Arg169His	p.R169H	ENST00000360948	NM_001012338.2	169	cGc/cAc																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439887	51439887	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	39	426	0	ENST00000262662.1:c.452A>C	p.Glu151Ala	p.E151A	ENST00000262662		151	gAg/gCg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729345	41729345	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs771243659		P-0042064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	64	702	0	ENST00000242208.4:c.1184A>G	p.Lys395Arg	p.K395R	ENST00000242208	NM_002192.2	395	aAg/aGg																																																																														
MYC	4609	MSKCC	GRCh37	8	128753200	128753200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	33	423	0	ENST00000377970.2:c.1361C>G	p.Ala454Gly	p.A454G	ENST00000377970	NM_002467.4	454	gCg/gGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0042065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	83	865	1	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29576097	29576098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	80	621	0	ENST00000358273.4:c.4076dup	p.Gln1360SerfsTer20	p.Q1360Sfs*20	ENST00000358273	NM_001042492.2	1357	ttc/ttCc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891277	101891277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	71	734	0	ENST00000374994.4:c.238C>T	p.Arg80Ter	p.R80*	ENST00000374994	NM_004612.2	80	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645163	86645163	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	42	394	0	ENST00000274376.6:c.1235G>C	p.Gly412Ala	p.G412A	ENST00000274376	NM_002890.2	412	gGa/gCa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976405	18976405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	76	972	1	ENST00000262803.5:c.3055G>A	p.Gly1019Arg	p.G1019R	ENST00000262803	NM_002911.3	1019	Gga/Aga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884800	151884800	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0042065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	55	416	0	ENST00000262189.6:c.4793G>A	p.Arg1598Lys	p.R1598K	ENST00000262189	NM_170606.2	1598	aGg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0042079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	163	859	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0042079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	88	556	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577501	7577501	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-	rs1427471466		P-0042160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	93	692	0	ENST00000269305.4:c.780del	p.Ser261ValfsTer84	p.S261Vfs*84	ENST00000269305	NM_001126112.2	260	tcC/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	172	767	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786204170		P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	87	423	1	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969884	81969884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840870		P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	186	749	0	ENST00000359376.3:c.2953G>A	p.Val985Ile	p.V985I	ENST00000359376	NM_002661.3	985	Gtc/Atc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581171	48581171	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	130	392	0	ENST00000342988.3:c.475A>T	p.Lys159Ter	p.K159*	ENST00000342988	NM_005359.5	159	Aag/Tag																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30194800	30194800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	141	707	0	ENST00000331968.5:c.345G>T	p.Gln115His	p.Q115H	ENST00000331968	NM_002742.2	115	caG/caT																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350554	15350554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199839337		P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	195	884	0	ENST00000263377.2:c.3361C>T	p.Arg1121Cys	p.R1121C	ENST00000263377	NM_058243.2	1121	Cgc/Tgc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468095	50468095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	127	613	0	ENST00000331340.3:c.1330A>T	p.Asn444Tyr	p.N444Y	ENST00000331340	NM_006060.4	444	Aac/Tac																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542702	141542702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	109	683	0	ENST00000220592.5:c.2284C>T	p.Pro762Ser	p.P762S	ENST00000220592	NM_012154.3	762	Cct/Tct																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46532688	46532688	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	108	497	0	ENST00000262741.5:c.390T>G	p.Phe130Leu	p.F130L	ENST00000262741	NM_003629.3	130	ttT/ttG																																																																														
KDR	3791	MSKCC	GRCh37	4	55984776	55984776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	146	501	0	ENST00000263923.4:c.353T>C	p.Val118Ala	p.V118A	ENST00000263923	NM_002253.2	118	gTt/gCt																																																																														
AR	367	MSKCC	GRCh37	X	66766505	66766505	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1403123525		P-0042174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	181	327	0	ENST00000374690.3:c.1517G>A	p.Gly506Asp	p.G506D	ENST00000374690	NM_000044.3	506	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	233	718	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069931	5069931	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	30	196	0	ENST00000381652.3:c.1520C>G	p.Ser507Ter	p.S507*	ENST00000381652	NM_004972.3	507	tCa/tGa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55143626	55143626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	40	335	0	ENST00000257290.5:c.1858C>A	p.Pro620Thr	p.P620T	ENST00000257290	NM_006206.4	620	Cct/Act																																																																														
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1286563734		P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	71	643	0	ENST00000269305.4:c.1001G>A	p.Gly334Glu	p.G334E	ENST00000269305	NM_001126112.2	334	gGg/gAg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981559	201981559	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	81	906	0	ENST00000359651.3:c.473C>G	p.Pro158Arg	p.P158R	ENST00000359651		158	cCc/cGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440392	49440393	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CA	CA	AG			P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	54	714	1	ENST00000301067.7:c.4417_4418delinsCT	p.Trp1473Leu	p.W1473L	ENST00000301067	NM_003482.3	1473	TGg/CTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448103	49448103	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	50	529	0	ENST00000301067.7:c.497C>G	p.Ser166Ter	p.S166*	ENST00000301067	NM_003482.3	166	tCa/tGa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118779	115118779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs989654838		P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	85	541	1	ENST00000257566.3:c.562C>T	p.Pro188Ser	p.P188S	ENST00000257566	NM_016569.3	188	Ccg/Tcg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975485	26975485	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	26	313	0	ENST00000381527.3:c.1110+1G>C		p.X370_splice	ENST00000381527	NM_001260.1	370																																																																															
NF1	4763	MSKCC	GRCh37	17	29508438	29508438	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs1057518360		P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	90	168	2	ENST00000358273.4:c.587-2A>T		p.X196_splice	ENST00000358273	NM_001042492.2	196																																																																															
PAK7	0	MSKCC	GRCh37	20	9561154	9561154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	31	416	0	ENST00000353224.5:c.628A>G	p.Ser210Gly	p.S210G	ENST00000353224	NM_177990.2	210	Agt/Ggt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827957	40827957	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	58	545	0	ENST00000373198.4:c.2471A>T	p.Asp824Val	p.D824V	ENST00000373198	NM_133170.3	824	gAc/gTc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143181692	143181692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	45	368	0	ENST00000262992.4:c.641C>A	p.Ala214Asp	p.A214D	ENST00000262992	NM_001101669.1	214	gCc/gAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180954	32180954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	52	704	0	ENST00000375023.3:c.2396G>C	p.Gly799Ala	p.G799A	ENST00000375023	NM_004557.3	799	gGc/gCc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877164	151877164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	197	389	1	ENST00000262189.6:c.7197G>T	p.Lys2399Asn	p.K2399N	ENST00000262189	NM_170606.2	2399	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76845345	76845345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	22	212	0	ENST00000373344.5:c.6176G>T	p.Arg2059Met	p.R2059M	ENST00000373344	NM_000489.3	2059	aGg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			36	828	644	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	323	420	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	48947596	48947596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			10	81	284	0	ENST00000267163.4:c.1183C>T	p.Gln395Ter	p.Q395*	ENST00000267163	NM_000321.2	395	Caa/Taa																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792545	33792545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746895795		P-0042206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	106	198	1	ENST00000498907.2:c.776C>T	p.Ala259Val	p.A259V	ENST00000498907	NM_004364.3	259	gCg/gTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16090003	16090003	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0042206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			22	283	188	0	ENST00000268712.3:c.109-2A>G		p.X37_splice	ENST00000268712	NM_006311.3	37																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711932	89711945	+	frameshift_variant	Frame_Shift_Del	DEL	AATCATCTGGATTA	AATCATCTGGATTA	-			P-0042206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			31	109	395	0	ENST00000371953.3:c.550_563del	p.Asn184Ter	p.N184*	ENST00000371953	NM_000314.4	184	AATCATCTGGATTAt/t																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371667	225371667	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			30	267	453	0	ENST00000264414.4:c.937A>G	p.Met313Val	p.M313V	ENST00000264414	NM_003590.4	313	Atg/Gtg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288533	33288533	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	168	388	0	ENST00000374542.5:c.1019T>C	p.Leu340Pro	p.L340P	ENST00000374542	NM_001141970.1	340	cTc/cCc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975515	13975846	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAGGCACTACCCAGGGGACAAAAGAAGAGAGAACATTTCTTTCTTTGGAGCAATTTTTTAAAAAAGTTTCTAATCCAAAGGAAGAAAAGATATTTTAGACTTAAGTCAAATGGAAATGAAAACTTTGTTGTTGCTATTGTTGTTTAAATCCAGAACAGATAAACTTCAAAATCACAACACCCTTAAACAGAAAATAGGATGATTAATGCAAAACCTTGTAACAGAACAAATATTAAATGTGTATTTTTAATGCATATACAAACAACTTAGTACAGGGAAAATTACGTCCAAAAAAGCAGTGGTATTTTTTCCATCTATTCTTGATATATCT	ATAGGCACTACCCAGGGGACAAAAGAAGAGAGAACATTTCTTTCTTTGGAGCAATTTTTTAAAAAAGTTTCTAATCCAAAGGAAGAAAAGATATTTTAGACTTAAGTCAAATGGAAATGAAAACTTTGTTGTTGCTATTGTTGTTTAAATCCAGAACAGATAAACTTCAAAATCACAACACCCTTAAACAGAAAATAGGATGATTAATGCAAAACCTTGTAACAGAACAAATATTAAATGTGTATTTTTAATGCATATACAAACAACTTAGTACAGGGAAAATTACGTCCAAAAAAGCAGTGGTATTTTTTCCATCTATTCTTGATATATCT	-			P-0042206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	272	259	1	ENST00000405192.2:c.366-325_372del		p.X122_splice	ENST00000405192	NM_001163147.1	122																																																																															
NBN	4683	MSKCC	GRCh37	8	90955548	90955548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	145	328	0	ENST00000265433.3:c.2117C>T	p.Ser706Leu	p.S706L	ENST00000265433	NM_002485.4	706	tCa/tTa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855594	45855597	+	missense_variant	Missense_Mutation	ONP	TCCC	TCCC	ACCA			P-0042206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			625	284	727	1	ENST00000391945.4:c.2060_2063delinsTGGT	p.Gly687_Asp688delinsValVal	p.G687_D688delinsVV	ENST00000391945	NM_000400.3	687	gGGGAc/gTGGTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	75	413	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	42	266	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356134	66356134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756357402		P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	80	510	1	ENST00000273854.3:c.1363C>T	p.Arg455Trp	p.R455W	ENST00000273854	NM_004439.5	455	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953041	2953041	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149857605		P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	154	886	0	ENST00000396946.4:c.2899C>T	p.Arg967Cys	p.R967C	ENST00000396946	NM_032415.4	967	Cgc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720803	89720804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	36	281	0	ENST00000371953.3:c.955_956dup	p.Thr321Ter	p.T321*	ENST00000371953	NM_000314.4	318	-/AC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584817	48584826	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GGACATTACT	GGACATTACT	-			P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	66	347	0	ENST00000342988.3:c.896_904+1del		p.GHYW299fs	ENST00000342988	NM_005359.5	299	GGACATTACTgg/gg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204878	128204878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	155	971	2	ENST00000341105.2:c.563C>T	p.Thr188Met	p.T188M	ENST00000341105	NM_032638.4	188	aCg/aTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965706	93965706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	58	369	0	ENST00000369303.4:c.2222G>T	p.Gly741Val	p.G741V	ENST00000369303	NM_004440.3	741	gGa/gTa																																																																														
ABL1	25	MSKCC	GRCh37	9	133759865	133759865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	107	846	0	ENST00000318560.5:c.2188G>A	p.Glu730Lys	p.E730K	ENST00000318560	NM_005157.4	730	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0042247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	201	445	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575232	48575232	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0042247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	97	152	0	ENST00000342988.3:c.424+2T>A		p.X142_splice	ENST00000342988	NM_005359.5	142																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52719818	52719818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	174	377	0	ENST00000322088.6:c.1030G>T	p.Ala344Ser	p.A344S	ENST00000322088	NM_014225.5	344	Gcc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112175191	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	TAC	TAC	AG			P-0042247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	43	83	0	ENST00000257430.4:c.3900_3902delinsAG	p.Asn1300LysfsTer5	p.N1300Kfs*5	ENST00000257430	NM_000038.5	1300	aaTACc/aaAGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845229	151845229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	80	474	0	ENST00000262189.6:c.13783C>T	p.Arg4595Cys	p.R4595C	ENST00000262189	NM_170606.2	4595	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828850	72828884	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGAGCATGAAAGGCATATCCAGGGACCTGTCCA	AAAGAGCATGAAAGGCATATCCAGGGACCTGTCCA	-			P-0042378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	31	572	0	ENST00000268489.5:c.7697_7731del	p.Leu2566Ter	p.L2566*	ENST00000268489	NM_006885.3	2566	tTGGACAGGTCCCTGGATATGCCTTTCATGCTCTTT/t																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732957	30732957	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs727504421		P-0042378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	82	418	0	ENST00000359013.4:c.1645G>T	p.Asp549Tyr	p.D549Y	ENST00000359013	NM_001024847.2	549	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	64	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164375	47164378	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0042388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	45	304	0	ENST00000409792.3:c.1748_1751del	p.Lys583SerfsTer17	p.K583Sfs*17	ENST00000409792	NM_014159.6	583	aAACAg/ag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1060500738		P-0042388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	56	387	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0042388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	86	650	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119762	70119763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGGC			P-0042388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	55	656	0	ENST00000245479.2:c.766_770dup	p.Pro258GlyfsTer23	p.P258Gfs*23	ENST00000245479	NM_000346.3	255	gag/gaGGGGCg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43699735	43699735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137879443		P-0042475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	358	504	1	ENST00000382044.4:c.5780C>T	p.Thr1927Met	p.T1927M	ENST00000382044	NM_001141980.1	1927	aCg/aTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858944	57858944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	559	819	3	ENST00000228682.2:c.440C>T	p.Pro147Leu	p.P147L	ENST00000228682	NM_005269.2	147	cCt/cTt																																																																														
CDC42	998	MSKCC	GRCh37	1	22408273	22408273	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	148	278	0	ENST00000344548.3:c.164T>A	p.Leu55His	p.L55H	ENST00000344548	NM_001039802.1	55	cTt/cAt																																																																														
SESN2	83667	MSKCC	GRCh37	1	28601414	28601414	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	242	693	0	ENST00000253063.3:c.1099T>A	p.Phe367Ile	p.F367I	ENST00000253063	NM_031459.4	367	Ttc/Atc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941187	36941187	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	275	801	0	ENST00000361632.4:c.152A>C	p.Asn51Thr	p.N51T	ENST00000361632		51	aAc/aCc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165873	118165873	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs761490678		P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	156	341	0	ENST00000369448.3:c.383A>G	p.Lys128Arg	p.K128R	ENST00000369448	NM_017709.3	128	aAa/aGa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162743353	162743353	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	112	296	0	ENST00000367921.3:c.1823A>T	p.Lys608Ile	p.K608I	ENST00000367921	NM_006182.2	608	aAa/aTa																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012890	176012890	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	138	383	0	ENST00000367669.3:c.1486A>T	p.Ile496Phe	p.I496F	ENST00000367669	NM_022457.5	496	Att/Ttt																																																																														
YAP1	10413	MSKCC	GRCh37	11	102056848	102056848	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	261	433	0	ENST00000282441.5:c.788T>C	p.Leu263Pro	p.L263P	ENST00000282441	NM_001130145.2	263	cTt/cCt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344309	118344309	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	199	314	0	ENST00000534358.1:c.2435A>G	p.Lys812Arg	p.K812R	ENST00000534358	NM_005933.3	812	aAa/aGa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658271	18658271	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	301	444	0	ENST00000266497.5:c.3076A>T	p.Thr1026Ser	p.T1026S	ENST00000266497		1026	Aca/Tca																																																																														
RB1	5925	MSKCC	GRCh37	13	49037966	49037966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	366	296	0	ENST00000267163.4:c.2206C>T	p.Gln736Ter	p.Q736*	ENST00000267163	NM_000321.2	736	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	49039240	49039240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267603841		P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	588	426	0	ENST00000267163.4:c.2318C>T	p.Ser773Phe	p.S773F	ENST00000267163	NM_000321.2	773	tCc/tTc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99452040	99452040	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	42	365	0	ENST00000268035.6:c.1374A>T	p.Glu458Asp	p.E458D	ENST00000268035	NM_000875.3	458	gaA/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7574009	7574009	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1131691005		P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	459	699	0	ENST00000269305.4:c.1018del	p.Met340CysfsTer5	p.M340Cfs*5	ENST00000269305	NM_001126112.2	340	Atg/tg																																																																														
NF1	4763	MSKCC	GRCh37	17	29676182	29676182	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	67	318	0	ENST00000358273.4:c.7234A>G	p.Ile2412Val	p.I2412V	ENST00000358273	NM_001042492.2	2412	Att/Gtt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41209145	41209145	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397509237		P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	130	531	0	ENST00000357654.3:c.5201T>C	p.Phe1734Ser	p.F1734S	ENST00000357654	NM_007294.3	1734	tTt/tCt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600477	10600477	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	281	707	0	ENST00000171111.5:c.1378A>G	p.Arg460Gly	p.R460G	ENST00000171111	NM_203500.1	460	Agg/Ggg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198269828	198269828	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	214	381	1	ENST00000335508.6:c.1511T>A	p.Ile504Asn	p.I504N	ENST00000335508	NM_012433.2	504	aTt/aAt																																																																														
AURKA	6790	MSKCC	GRCh37	20	54959379	54959379	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A	rs1022155570		P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	130	269	0	ENST00000312783.6:c.321A>T	p.Glu107Asp	p.E107D	ENST00000312783	NM_198436.1	107	gaA/gaT																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091839	29091839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	179	407	1	ENST00000328354.6:c.1118A>T	p.Lys373Met	p.K373M	ENST00000328354	NM_007194.3	373	aAg/aTg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29092923	29092923	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	142	442	0	ENST00000328354.6:c.1061del	p.Leu354TyrfsTer11	p.L354Yfs*11	ENST00000328354	NM_007194.3	354	tTa/ta																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138409963	138409976	+	frameshift_variant	Frame_Shift_Del	DEL	GATATTGAGAAAGT	GATATTGAGAAAGT	-			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	56	361	0	ENST00000289153.2:c.1902_1915del	p.Glu634AspfsTer11	p.E634Dfs*11	ENST00000289153	NM_006219.2	634	gaACTTTCTCAATATCtt/gatt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461542	138461542	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	287	444	0	ENST00000289153.2:c.479T>C	p.Ile160Thr	p.I160T	ENST00000289153	NM_006219.2	160	aTc/aCc																																																																														
ATR	545	MSKCC	GRCh37	3	142204033	142204033	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	309	514	0	ENST00000350721.4:c.6170A>C	p.Lys2057Thr	p.K2057T	ENST00000350721	NM_001184.3	2057	aAa/aCa																																																																														
ATR	545	MSKCC	GRCh37	3	142259767	142259767	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs762440684		P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	74	355	0	ENST00000350721.4:c.3560A>G	p.Asp1187Gly	p.D1187G	ENST00000350721	NM_001184.3	1187	gAt/gGt																																																																														
ATR	545	MSKCC	GRCh37	3	142275272	142275272	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	281	451	0	ENST00000350721.4:c.2031C>G	p.Ile677Met	p.I677M	ENST00000350721	NM_001184.3	677	atC/atG																																																																														
TP63	8626	MSKCC	GRCh37	3	189612119	189612119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	403	656	0	ENST00000264731.3:c.1871C>T	p.Ser624Phe	p.S624F	ENST00000264731	NM_003722.4	624	tCt/tTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629027	187629027	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1027080321		P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	159	529	0	ENST00000441802.2:c.1955A>G	p.Asn652Ser	p.N652S	ENST00000441802	NM_005245.3	652	aAt/aGt																																																																														
APC	324	MSKCC	GRCh37	5	112177914	112177914	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	147	328	0	ENST00000257430.4:c.6625del	p.Ile2209PhefsTer5	p.I2209Ffs*5	ENST00000257430	NM_000038.5	2208	gAa/ga																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681076	30681076	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs774373309		P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	112	434	0	ENST00000376406.3:c.643A>G	p.Asn215Asp	p.N215D	ENST00000376406	NM_014641.2	215	Aat/Gat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527318	157527318	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	81	255	0	ENST00000346085.5:c.5043A>T	p.Glu1681Asp	p.E1681D	ENST00000346085	NM_020732.3	1681	gaA/gaT																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50358678	50358678	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	30	236	0	ENST00000331340.3:c.21A>C	p.Gln7His	p.Q7H	ENST00000331340	NM_006060.4	7	caA/caC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879089	151879089	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	213	571	0	ENST00000262189.6:c.5856A>T	p.Leu1952Phe	p.L1952F	ENST00000262189	NM_170606.2	1952	ttA/ttT																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127933416	127933416	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	368	460	0	ENST00000373547.4:c.119A>G	p.Asn40Ser	p.N40S	ENST00000373547	NM_002721.4	40	aAt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	45	350	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748822	43748822	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	47	817	2	ENST00000382044.4:c.1984G>T	p.Glu662Ter	p.E662*	ENST00000382044	NM_001141980.1	662	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579405	7579405	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	44	775	0	ENST00000269305.4:c.282del	p.Ser95LeufsTer28	p.S95Lfs*28	ENST00000269305	NM_001126112.2	94	tcA/tc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	22	258	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs397517199		P-0042531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	32	196	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0042531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	65	374	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	52	286	0	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108202753	108202753	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs781215442		P-0042531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	59	243	0	ENST00000278616.4:c.7777C>T	p.Gln2593Ter	p.Q2593*	ENST00000278616	NM_000051.3	2593	Cag/Tag																																																																														
PPARG	5468	MSKCC	GRCh37	3	12475550	12475550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1479145908		P-0042531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	94	437	0	ENST00000287820.6:c.1424C>T	p.Thr475Met	p.T475M	ENST00000287820	NM_015869.4	475	aCg/aTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222259	2222259	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371443260		P-0042531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	79	742	3	ENST00000398665.3:c.3091G>A	p.Asp1031Asn	p.D1031N	ENST00000398665	NM_032482.2	1031	Gat/Aat																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908816	101908816	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	52	313	0	ENST00000374994.4:c.1180G>T	p.Glu394Ter	p.E394*	ENST00000374994	NM_004612.2	394	Gaa/Taa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938442	44938442	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	86	184	0	ENST00000377967.4:c.2990del	p.Met997ArgfsTer2	p.M997Rfs*2	ENST00000377967	NM_021140.2	997	aTg/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	66	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0042532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	131	719	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0042532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	21	261	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581234	48581234	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767332		P-0042532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	90	531	0	ENST00000342988.3:c.538C>T	p.Gln180Ter	p.Q180*	ENST00000342988	NM_005359.5	180	Caa/Taa																																																																														
PARP1	142	MSKCC	GRCh37	1	226549692	226549692	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	32	403	0	ENST00000366794.5:c.2941G>C	p.Asp981His	p.D981H	ENST00000366794	NM_001618.3	981	Gac/Cac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	226	405	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0042545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	205	592	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
INHA	3623	MSKCC	GRCh37	2	220439722	220439722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	283	860	1	ENST00000243786.2:c.575C>T	p.Pro192Leu	p.P192L	ENST00000243786	NM_002191.3	192	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	117	418	0				ENST00000310581	NM_198253.2																																																																																
YAP1	10413	MSKCC	GRCh37	11	102100603	102100603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	151	488	0	ENST00000282441.5:c.1447C>T	p.Leu483Phe	p.L483F	ENST00000282441	NM_001130145.2	483	Ctt/Ttt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500505	99500505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	205	684	0	ENST00000268035.6:c.3938C>T	p.Ser1313Phe	p.S1313F	ENST00000268035	NM_000875.3	1313	tCc/tTc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59871065	59871065	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1379791142		P-0042545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	58	230	0	ENST00000259008.2:c.1366C>T	p.Leu456Phe	p.L456F	ENST00000259008	NM_032043.2	456	Ctt/Ttt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265574	198265575	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0042545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	69	437	0	ENST00000335508.6:c.2582_2583delinsTT	p.Ala861Val	p.A861V	ENST00000335508	NM_012433.2	861	gCC/gTT																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851825	134851825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	220	667	1	ENST00000398015.3:c.1231G>A	p.Gly411Arg	p.G411R	ENST00000398015	NM_004441.4	411	Gga/Aga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106524619	106524619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	122	253	0	ENST00000359195.3:c.2780G>A	p.Arg927Lys	p.R927K	ENST00000359195	NM_002649.2	927	aGa/aAa																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0042547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	65	212	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	102	393	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
IRF4	3662	MSKCC	GRCh37	6	394849	394849	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1377317453		P-0042547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	59	416	0	ENST00000380956.4:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000380956	NM_001195286.1	82	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112174893	112174893	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs730881247		P-0042547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	19	223	0	ENST00000257430.4:c.3602C>A	p.Ser1201Ter	p.S1201*	ENST00000257430	NM_000038.5	1201	tCa/tAa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549381	21549381	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3091	637	531	0	ENST00000382592.4:c.2895T>A	p.Asp965Glu	p.D965E	ENST00000382592	NM_014572.2	965	gaT/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577150	7577151	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACCAC			P-0042547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	164	558	0	ENST00000269305.4:c.783-1_787dup	p.Ser261_Gly262dup	p.S261_G262dup	ENST00000269305	NM_001126112.2	261	aat/aGTGGTAat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	44	351	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587782272		P-0042601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	137	588	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942124	81942124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781434235		P-0042601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	45	645	1	ENST00000359376.3:c.1661C>T	p.Thr554Met	p.T554M	ENST00000359376	NM_002661.3	554	aCg/aTg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69218353	69218353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	36	458	0	ENST00000462284.1:c.445C>A	p.Gln149Lys	p.Q149K	ENST00000462284	NM_002392.5	149	Cag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266079	41266629	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	CAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTAT	CAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTAT	-			P-0042601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	44	292	0	ENST00000349496.5:c.78_428del		p.X26_splice	ENST00000349496	NM_001904.3	26	CAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTAT/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0042641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	169	782	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519936		P-0042641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	77	368	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169985727	169985727	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369872734		P-0042641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	123	455	0	ENST00000295797.4:c.389G>A	p.Arg130His	p.R130H	ENST00000295797	NM_002740.5	130	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714543	52714543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	144	675	0	ENST00000322088.6:c.301G>A	p.Glu101Lys	p.E101K	ENST00000322088	NM_014225.5	101	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692839	89692839	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1064793243		P-0042645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	28	224	0	ENST00000371953.3:c.323T>C	p.Leu108Pro	p.L108P	ENST00000371953	NM_000314.4	108	cTt/cCt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519961		P-0042646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	33	438	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	127	403	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023266	27023278	+	frameshift_variant	Frame_Shift_Del	DEL	CGGTGGCGGCAGC	CGGTGGCGGCAGC	-			P-0042705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	37	112	0	ENST00000324856.7:c.372_384del	p.Gly125AlafsTer103	p.G125Afs*103	ENST00000324856	NM_006015.4	124	ggCGGTGGCGGCAGC/gg																																																																														
MGA	23269	MSKCC	GRCh37	15	42003335	42003357	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTTGGATGAAAATATATTTCC	ACTTTGGATGAAAATATATTTCC	-			P-0042705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	108	485	0	ENST00000219905.7:c.2873_2895del	p.Thr958LysfsTer4	p.T958Kfs*4	ENST00000219905	NM_001164273.1	958	ACTTTGGATGAAAATATATTTCCa/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7577098	7577109	+	inframe_deletion	In_Frame_Del	DEL	TCTCCCAGGACA	TCTCCCAGGACA	-			P-0042705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	155	699	0	ENST00000269305.4:c.829_840del	p.Cys277_Arg280del	p.C277_R280del	ENST00000269305	NM_001126112.2	277	TGTCCTGGGAGA/-																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047366	128047366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	77	503	1	ENST00000285398.2:c.556C>A	p.Gln186Lys	p.Q186K	ENST00000285398	NM_000122.1	186	Cag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	79	298	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0042757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	262	553	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41267796	41267796	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0042757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	190	464	0	ENST00000357654.3:c.81T>A	p.Cys27Ter	p.C27*	ENST00000357654	NM_007294.3	27	tgT/tgA																																																																														
CD79B	974	MSKCC	GRCh37	17	62007481	62007481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	124	540	0	ENST00000392795.3:c.386A>G	p.Asn129Ser	p.N129S	ENST00000392795	NM_001039933.1	129	aAc/aGc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285435	38285441	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTACCTT	GTACCTT	-			P-0042757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	257	574	0	ENST00000425967.3:c.712_714+4del		p.X238_splice	ENST00000425967	NM_001174067.1	238																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	265	487	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274248	10274248	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	149	434	0	ENST00000330684.3:c.21G>A	p.Trp7Ter	p.W7*	ENST00000330684	NM_001134407.1	7	tgG/tgA																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763733111		P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	28	385	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	338190	338190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs370661416		P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	327	730	1	ENST00000262320.3:c.2521C>T	p.Arg841Ter	p.R841*	ENST00000262320	NM_003502.3	841	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	83	522	1	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	83	522	1	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915925	127915925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	257	532	0	ENST00000373547.4:c.556C>T	p.Pro186Ser	p.P186S	ENST00000373547	NM_002721.4	186	Cct/Tct																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274803	123274803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	159	528	0	ENST00000358487.5:c.1115C>T	p.Ser372Phe	p.S372F	ENST00000358487	NM_000141.4	372	tCc/tTc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275779	38275779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	175	678	0	ENST00000425967.3:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000425967	NM_001174067.1	497	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	54	398	0				ENST00000310581	NM_198253.2																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15302837	15302837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	205	813	0	ENST00000263388.2:c.613C>T	p.Pro205Ser	p.P205S	ENST00000263388	NM_000435.2	205	Cca/Tca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	83	522	1	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
E2F3	1871	MSKCC	GRCh37	6	20490506	20490506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	90	609	2	ENST00000346618.3:c.1243C>T	p.Pro415Ser	p.P415S	ENST00000346618	NM_001949.4	415	Cct/Tct																																																																														
CBL	867	MSKCC	GRCh37	11	119168192	119168192	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	61	379	0	ENST00000264033.4:c.2251+1G>C		p.X751_splice	ENST00000264033	NM_005188.3	751																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434752	49434752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	94	816	0	ENST00000301067.7:c.6801del	p.Ala2268LeufsTer18	p.A2268Lfs*18	ENST00000301067	NM_003482.3	2267	aaA/aa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927992	49927992	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1235783876		P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	211	641	0	ENST00000296474.3:c.3736C>T	p.His1246Tyr	p.H1246Y	ENST00000296474	NM_002447.2	1246	Cac/Tac																																																																														
BCL6	604	MSKCC	GRCh37	3	187447763	187447763	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1398495055		P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	173	503	0	ENST00000232014.4:c.430C>T	p.Leu144Phe	p.L144F	ENST00000232014	NM_001130845.1	144	Ctc/Ttc																																																																														
KDR	3791	MSKCC	GRCh37	4	55956128	55956128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	127	447	0	ENST00000263923.4:c.3187G>A	p.Gly1063Arg	p.G1063R	ENST00000263923	NM_002253.2	1063	Gga/Aga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562790	21562790	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1327443204		P-0042785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	173	514	0	ENST00000382592.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000382592	NM_014572.2	377	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579447	7579447	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	333	639	0	ENST00000269305.4:c.240del	p.Thr81HisfsTer42	p.T81Hfs*42	ENST00000269305	NM_001126112.2	80	ccT/cc																																																																														
PARP1	142	MSKCC	GRCh37	1	226568862	226568862	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765392279		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	263	985	0	ENST00000366794.5:c.1207C>T	p.Arg403Trp	p.R403W	ENST00000366794	NM_001618.3	403	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	181	530	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858093	9858093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064796904		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	253	824	0	ENST00000330684.3:c.3308G>A	p.Arg1103His	p.R1103H	ENST00000330684	NM_001134407.1	1103	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	185	1156	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	190	661	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128028932	128028932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1427747564		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	244	920	0	ENST00000285398.2:c.1925G>A	p.Arg642Gln	p.R642Q	ENST00000285398	NM_000122.1	642	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1157879635		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	107	558	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519757		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	110	132	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112173249	112173249	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs863225321		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	145	125	0	ENST00000257430.4:c.1959-1G>A		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508083	106508083	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339698935		P-0042802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	133	405	0	ENST00000359195.3:c.77G>A	p.Arg26His	p.R26H	ENST00000359195	NM_002649.2	26	cGc/cAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343258	118343258	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs781991683		P-0042851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	24	365	1	ENST00000534358.1:c.1384T>A	p.Ser462Thr	p.S462T	ENST00000534358	NM_005933.3	462	Tca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577577	7577577	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	45	680	0	ENST00000269305.4:c.704del	p.Asn235ThrfsTer12	p.N235Tfs*12	ENST00000269305	NM_001126112.2	235	aAc/ac																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162885	38162885	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs780272184		P-0042851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	57	787	0	ENST00000317025.8:c.2321A>T	p.Tyr774Phe	p.Y774F	ENST00000317025	NM_023034.1	774	tAt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	469	860	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	206	414	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106434	27106434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	175	750	0	ENST00000324856.7:c.6046del	p.Leu2016CysfsTer14	p.L2016Cfs*14	ENST00000324856	NM_006015.4	2015	atC/at																																																																														
ATM	472	MSKCC	GRCh37	11	108173731	108173731	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	164	430	0	ENST00000278616.4:c.5471T>C	p.Leu1824Pro	p.L1824P	ENST00000278616	NM_000051.3	1824	cTt/cCt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410076	63410076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	60	966	0	ENST00000330258.3:c.3091G>A	p.Gly1031Ser	p.G1031S	ENST00000330258	NM_152424.3	1031	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099380	27099380	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	56	407	0	ENST00000324856.7:c.3617del	p.Thr1206IlefsTer10	p.T1206Ifs*10	ENST00000324856	NM_006015.4	1206	aCt/at																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982963	201982963	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs549132954		P-0042907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	49	569	1	ENST00000359651.3:c.812G>C	p.Arg271Thr	p.R271T	ENST00000359651		271	aGa/aCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428450	49428450	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0042907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	38	433	0	ENST00000301067.7:c.10356-1G>A		p.X3452_splice	ENST00000301067	NM_003482.3	3452																																																																															
MGA	23269	MSKCC	GRCh37	15	42028411	42028411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	18	254	2	ENST00000219905.7:c.3949G>A	p.Glu1317Lys	p.E1317K	ENST00000219905	NM_001164273.1	1317	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832863	3832863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	27	366	0	ENST00000262367.5:c.1395G>C	p.Gln465His	p.Q465H	ENST00000262367	NM_004380.2	465	caG/caC																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041758	14041758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	50	362	0	ENST00000311895.7:c.2305C>G	p.Leu769Val	p.L769V	ENST00000311895	NM_005236.2	769	Ctc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0042907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	142	700	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856009	45856009	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	125	538	0	ENST00000391945.4:c.1897C>G	p.Leu633Val	p.L633V	ENST00000391945	NM_000400.3	633	Ctc/Gtc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31388063	31388063	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs758473556		P-0042907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	25	244	0	ENST00000328111.2:c.1864A>G	p.Ile622Val	p.I622V	ENST00000328111	NM_006892.3	622	Atc/Gtc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	111	166	0				ENST00000310581	NM_198253.2																																																																																
EGFR	1956	MSKCC	GRCh37	7	55240795	55240796	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0042907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	50	681	0	ENST00000275493.2:c.2039_2040delinsAC	p.Arg680His	p.R680H	ENST00000275493	NM_005228.3	680	cGG/cAC																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519922		P-0043041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	63	521	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																														
FH	2271	MSKCC	GRCh37	1	241682896	241682896	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200496951		P-0043041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	34	333	0	ENST00000366560.3:c.127C>G	p.Arg43Gly	p.R43G	ENST00000366560	NM_000143.3	43	Cga/Gga																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783617	50783617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	31	358	1	ENST00000398568.2:c.8C>T	p.Ser3Leu	p.S3L	ENST00000398568	NM_001042412.1	3	tCa/tTa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226934	2226934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	26	362	0	ENST00000398665.3:c.4414C>T	p.Pro1472Ser	p.P1472S	ENST00000398665	NM_032482.2	1472	Ccg/Tcg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522456	187522456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	98	501	0	ENST00000441802.2:c.11607G>A	p.Met3869Ile	p.M3869I	ENST00000441802	NM_005245.3	3869	atG/atA																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931775	39931775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	75	620	0	ENST00000378444.4:c.2824G>C	p.Asp942His	p.D942H	ENST00000378444	NM_001123385.1	942	Gat/Cat																																																																														
TP63	8626	MSKCC	GRCh37	3	189586422	189586422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	128	602	0	ENST00000264731.3:c.1046G>T	p.Gly349Val	p.G349V	ENST00000264731	NM_003722.4	349	gGa/gTa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098959	178098959	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519921		P-0043061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	71	288	0	ENST00000397062.3:c.86A>G	p.Asp29Gly	p.D29G	ENST00000397062	NM_006164.4	29	gAt/gGt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908876	101908876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs387906697		P-0043061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	206	642	0	ENST00000374994.4:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000374994	NM_004612.2	414	Cga/Tga																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276378	115276378	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs749941097		P-0043061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	70	438	0	ENST00000438362.2:c.950T>C	p.Ile317Thr	p.I317T	ENST00000438362	NM_001242891.1	317	aTc/aCc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562742	21562743	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-	rs1309929430		P-0043061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	115	494	4	ENST00000382592.4:c.1176_1177del	p.His393ArgfsTer6	p.H393Rfs*6	ENST00000382592	NM_014572.2	392	gcGCac/gcac																																																																														
FLT1	2321	MSKCC	GRCh37	13	28908231	28908231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	117	566	1	ENST00000282397.4:c.2524G>T	p.Val842Phe	p.V842F	ENST00000282397	NM_002019.4	842	Gtt/Ttt																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128201252	128201252	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs942714895		P-0043061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	248	770	3	ENST00000265960.3:c.1483G>A	p.Ala495Thr	p.A495T	ENST00000265960	NM_001006617.1	495	Gct/Act																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	117	466	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	32	296	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																														
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	36	308	0	ENST00000257430.4:c.4393_4394dup	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	45	400	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	95	734	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521487	8521487	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758577045		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	108	478	0	ENST00000356435.5:c.751G>A	p.Gly251Arg	p.G251R	ENST00000356435		251	Gga/Aga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	71	485	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935633	13935633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756650303		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	91	402	0	ENST00000405192.2:c.1223G>A	p.Arg408His	p.R408H	ENST00000405192	NM_001163147.1	408	cGt/cAt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	60	432	1	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
ARAF	369	MSKCC	GRCh37	X	47424734	47424734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	111	577	3	ENST00000377045.4:c.547del	p.Gln183ArgfsTer109	p.Q183Rfs*109	ENST00000377045	NM_001654.4	181	aCc/ac																																																																														
POLE	5426	MSKCC	GRCh37	12	133219908	133219908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs969429633		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	214	604	0	ENST00000320574.5:c.4453C>T	p.Arg1485Cys	p.R1485C	ENST00000320574	NM_006231.2	1485	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	28	103	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6043355	6043355	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188006077		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	41	196	1	ENST00000265849.7:c.319C>T	p.Arg107Trp	p.R107W	ENST00000265849	NM_000535.5	107	Cgg/Tgg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80359307		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	34	273	3	ENST00000380152.3:c.1813del	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178635	32178635	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs761063325		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	134	768	4	ENST00000375023.3:c.2759del	p.Pro920LeufsTer12	p.P920Lfs*12	ENST00000375023	NM_004557.3	920	cCt/ct																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204869	128204869	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767059760		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	184	871	0	ENST00000341105.2:c.572C>T	p.Ala191Val	p.A191V	ENST00000341105	NM_032638.4	191	gCg/gTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42042300	42042301	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs866465268		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	78	483	0	ENST00000219905.7:c.6499_6500del	p.Leu2167GlyfsTer27	p.L2167Gfs*27	ENST00000219905	NM_001164273.1	2165	gaCTct/gact																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542357	187542357	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs769432838		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	64	322	0	ENST00000441802.2:c.5383C>T	p.Arg1795Ter	p.R1795*	ENST00000441802	NM_005245.3	1795	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs773570504		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	56	321	0	ENST00000278616.4:c.6908dup	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10270726	10270726	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	98	487	0	ENST00000340748.4:c.1009del	p.Met337TrpfsTer8	p.M337Wfs*8	ENST00000340748		337	Atg/tg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273944	10273944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	146	886	3	ENST00000330684.3:c.325G>A	p.Val109Ile	p.V109I	ENST00000330684	NM_001134407.1	109	Gta/Ata																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524967	8524967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	58	316	0	ENST00000356435.5:c.637G>A	p.Ala213Thr	p.A213T	ENST00000356435		213	Gcg/Acg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	86	639	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919734	50919734	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878854545		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	114	751	0	ENST00000440232.2:c.2902C>T	p.Arg968Cys	p.R968C	ENST00000440232	NM_002691.3	968	Cgc/Tgc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	110	625	7	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
ATM	472	MSKCC	GRCh37	11	108200946	108200946	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147604227		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	42	268	0	ENST00000278616.4:c.7313C>T	p.Thr2438Ile	p.T2438I	ENST00000278616	NM_000051.3	2438	aCa/aTa																																																																														
CASP8	841	MSKCC	GRCh37	2	202131411	202131411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs777784105		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	109	489	0	ENST00000358485.4:c.379C>T	p.Arg127Ter	p.R127*	ENST00000358485	NM_001080125.1	127	Cga/Tga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953214	81953214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369516453		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	65	373	1	ENST00000359376.3:c.2180G>A	p.Arg727Gln	p.R727Q	ENST00000359376	NM_002661.3	727	cGa/cAa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897444	78897444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746953724		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	136	771	1	ENST00000306801.3:c.2779C>T	p.Arg927Trp	p.R927W	ENST00000306801	NM_020761.2	927	Cgg/Tgg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265516	152265517	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	101	523	1	ENST00000206249.3:c.974dup	p.Ile326AspfsTer7	p.I326Dfs*7	ENST00000206249	NM_000125.3	323	-/C																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778452	3778452	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs765821935		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	117	799	3	ENST00000262367.5:c.6596A>T	p.Gln2199Leu	p.Q2199L	ENST00000262367	NM_004380.2	2199	cAg/cTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874092	151874093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	66	522	0	ENST00000262189.6:c.8445dup	p.Ser2816IlefsTer6	p.S2816Ifs*6	ENST00000262189	NM_170606.2	2815	-/A																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324886	31324887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760037174		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	51	525	0	ENST00000412585.2:c.49_50insG	p.Leu17ArgfsTer82	p.L17Rfs*82	ENST00000412585	NM_005514.6	17	ctg/cGtg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933438	49933438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	131	693	1	ENST00000296474.3:c.2752del	p.Leu918CysfsTer18	p.L918Cfs*18	ENST00000296474	NM_002447.2	918	Ctg/tg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948747	71948748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760925109		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	136	757	9	ENST00000298229.2:c.3466dup	p.Arg1156ProfsTer59	p.R1156Pfs*59	ENST00000298229	NM_001567.3	1153	-/C																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520202	176520202	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763979974		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	137	858	1	ENST00000292408.4:c.1121C>T	p.Ala374Val	p.A374V	ENST00000292408	NM_213647.1	374	gCg/gTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929161	32929162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	50	499	0	ENST00000380152.3:c.7177dup	p.Met2393AsnfsTer19	p.M2393Nfs*19	ENST00000380152		2391	gaa/gAaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097143	11097143	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886937766		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	141	779	1	ENST00000344626.4:c.634G>A	p.Gly212Arg	p.G212R	ENST00000344626	NM_003072.3	212	Ggg/Agg																																																																														
EP300	2033	MSKCC	GRCh37	22	41525977	41525977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	49	458	0	ENST00000263253.7:c.1256del	p.Asn419MetfsTer12	p.N419Mfs*12	ENST00000263253	NM_001429.3	418	Aaa/aa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161392	55161392	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767697835		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	102	472	0	ENST00000257290.5:c.3223G>A	p.Asp1075Asn	p.D1075N	ENST00000257290	NM_006206.4	1075	Gac/Aac																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355204	15355204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147958185		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	127	821	1	ENST00000263377.2:c.2419G>A	p.Val807Ile	p.V807I	ENST00000263377	NM_058243.2	807	Gtc/Atc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961526	54961526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1211313151		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	78	497	0	ENST00000312783.6:c.106C>T	p.Pro36Ser	p.P36S	ENST00000312783	NM_198436.1	36	Cca/Tca																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226712	2226712	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780009010		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	118	734	1	ENST00000398665.3:c.4192G>A	p.Gly1398Arg	p.G1398R	ENST00000398665	NM_032482.2	1398	Ggg/Agg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239981	98239981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142791675		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	51	405	0	ENST00000331920.6:c.1351G>A	p.Ala451Thr	p.A451T	ENST00000331920	NM_000264.3	451	Gcc/Acc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350878	89350878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1336431815		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	115	763	1	ENST00000301030.4:c.2072G>A	p.Arg691His	p.R691H	ENST00000301030	NM_001256183.1	691	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244200	153244200	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	72	431	0	ENST00000281708.4:c.1957del	p.Thr653ArgfsTer8	p.T653Rfs*8	ENST00000281708	NM_033632.3	653	Acg/cg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118367048	118367048	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782094920		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	70	454	1	ENST00000534358.1:c.5630C>T	p.Ala1877Val	p.A1877V	ENST00000534358	NM_005933.3	1877	gCg/gTg																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096334	2096334	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139165943		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	155	767	0	ENST00000219066.1:c.173C>T	p.Pro58Leu	p.P58L	ENST00000219066	NM_002528.5	58	cCg/cTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11276210	11276210	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	45	412	0	ENST00000361445.4:c.3112A>G	p.Met1038Val	p.M1038V	ENST00000361445	NM_004958.3	1038	Atg/Gtg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257616	16257616	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	73	487	0	ENST00000375759.3:c.4881A>C	p.Lys1627Asn	p.K1627N	ENST00000375759	NM_015001.2	1627	aaA/aaC																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748173	72748173	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	63	279	0	ENST00000357731.5:c.5A>G	p.Asp2Gly	p.D2G	ENST00000357731	NM_173808.2	2	gAc/gGc																																																																														
BCL10	8915	MSKCC	GRCh37	1	85741977	85741977	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	86	518	0	ENST00000370580.1:c.57+2T>C		p.X19_splice	ENST00000370580	NM_003921.4	19																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206651526	206651526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	86	499	0	ENST00000367120.3:c.836C>T	p.Pro279Leu	p.P279L	ENST00000367120	NM_014002.3	279	cCc/cTc																																																																														
FH	2271	MSKCC	GRCh37	1	241661163	241661163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	51	439	0	ENST00000366560.3:c.1498T>C	p.Trp500Arg	p.W500R	ENST00000366560	NM_000143.3	500	Tgg/Cgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944498	71944498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	117	678	0	ENST00000298229.2:c.2054T>C	p.Val685Ala	p.V685A	ENST00000298229	NM_001567.3	685	gTg/gCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444209	49444210	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	177	911	0	ENST00000301067.7:c.3161dup	p.Leu1055ValfsTer13	p.L1055Vfs*13	ENST00000301067	NM_003482.3	1054	ccg/ccCg																																																																														
CDK4	1019	MSKCC	GRCh37	12	58143011	58143011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	87	752	1	ENST00000257904.6:c.773A>G	p.Gln258Arg	p.Q258R	ENST00000257904	NM_000075.3	258	cAg/cGg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30194833	30194833	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	81	579	0	ENST00000331968.5:c.312del	p.Arg105AlafsTer13	p.R105Afs*13	ENST00000331968	NM_002742.2	104	ttT/tt																																																																														
MGA	23269	MSKCC	GRCh37	15	42042736	42042736	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	51	406	0	ENST00000219905.7:c.6934del	p.Thr2312LeufsTer23	p.T2312Lfs*23	ENST00000219905	NM_001164273.1	2311	Aaa/aa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251015	99251015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	95	591	0	ENST00000268035.6:c.319C>A	p.Arg107Ser	p.R107S	ENST00000268035	NM_000875.3	107	Cgc/Agc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2132439	2132439	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	118	807	0	ENST00000219476.3:c.3817G>A	p.Ala1273Thr	p.A1273T	ENST00000219476	NM_000548.3	1273	Gcc/Acc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650714	67650714	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	123	597	0	ENST00000264010.4:c.1019A>G	p.His340Arg	p.H340R	ENST00000264010	NM_006565.3	340	cAt/cGt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89862428	89862428	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs976556567		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	77	527	0	ENST00000389301.3:c.894-2A>G		p.X298_splice	ENST00000389301	NM_000135.2	298																																																																															
NF1	4763	MSKCC	GRCh37	17	29546108	29546108	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	89	417	0	ENST00000358273.4:c.1613T>C	p.Met538Thr	p.M538T	ENST00000358273	NM_001042492.2	538	aTg/aCg																																																																														
NF1	4763	MSKCC	GRCh37	17	29664859	29664859	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369803831		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	30	310	0	ENST00000358273.4:c.6665C>T	p.Thr2222Met	p.T2222M	ENST00000358273	NM_001042492.2	2222	aCg/aTg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533931	63533931	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	49	460	0	ENST00000307078.5:c.1223A>G	p.Glu408Gly	p.E408G	ENST00000307078	NM_004655.3	408	gAg/gGg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250383	10250383	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	99	463	0	ENST00000340748.4:c.3869T>C	p.Met1290Thr	p.M1290T	ENST00000340748		1290	aTg/aCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303319	15303319	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1174452738		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	186	823	0	ENST00000263388.2:c.209G>A	p.Gly70Asp	p.G70D	ENST00000263388	NM_000435.2	70	gGc/gAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223547	36223547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762187488		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	151	904	0	ENST00000222270.7:c.6097C>T	p.Arg2033Cys	p.R2033C	ENST00000222270	NM_014727.1	2033	Cgc/Tgc																																																																														
AKT2	208	MSKCC	GRCh37	19	40740981	40740981	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	142	797	0	ENST00000392038.2:c.1337A>G	p.Gln446Arg	p.Q446R	ENST00000392038	NM_001626.4	446	cAg/cGg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796881	42796881	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	132	773	0	ENST00000575354.2:c.3340del	p.Ala1114ProfsTer47	p.A1114Pfs*47	ENST00000575354	NM_015125.3	1113	caG/ca																																																																														
XPO1	7514	MSKCC	GRCh37	2	61713016	61713016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	60	401	0	ENST00000401558.2:c.2395G>C	p.Glu799Gln	p.E799Q	ENST00000401558	NM_003400.3	799	Gaa/Caa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99179972	99179972	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1231469932		P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	124	689	1	ENST00000074304.5:c.1915G>A	p.Asp639Asn	p.D639N	ENST00000074304	NM_001134224.1	639	Gac/Aac																																																																														
SRC	6714	MSKCC	GRCh37	20	36030854	36030854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	90	400	0	ENST00000358208.4:c.1133C>T	p.Ala378Val	p.A378V	ENST00000358208		378	gCg/gTg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121096	29121096	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	87	529	1	ENST00000328354.6:c.461del	p.Asn154ThrfsTer7	p.N154Tfs*7	ENST00000328354	NM_007194.3	154	aAc/ac																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430566	181430566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	108	627	0	ENST00000325404.1:c.418G>A	p.Ala140Thr	p.A140T	ENST00000325404	NM_003106.3	140	Gcg/Acg																																																																														
BCL6	604	MSKCC	GRCh37	3	187446923	187446923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	114	742	0	ENST00000232014.4:c.1270G>T	p.Asp424Tyr	p.D424Y	ENST00000232014	NM_001130845.1	424	Gac/Tac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807315	1807315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	122	755	0	ENST00000260795.2:c.1564C>A	p.Leu522Met	p.L522M	ENST00000260795		522	Ctg/Atg																																																																														
KIT	3815	MSKCC	GRCh37	4	55561780	55561780	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	74	322	0	ENST00000288135.5:c.170T>C	p.Leu57Ser	p.L57S	ENST00000288135	NM_000222.2	57	tTa/tCa																																																																														
APC	324	MSKCC	GRCh37	5	112178973	112178973	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	42	309	0	ENST00000257430.4:c.7682T>C	p.Val2561Ala	p.V2561A	ENST00000257430	NM_000038.5	2561	gTa/gCa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910618	29910618	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	148	843	0	ENST00000376809.5:c.158A>T	p.Asp53Val	p.D53V	ENST00000376809	NM_002116.7	53	gAc/gTc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323270	31323273	+	frameshift_variant	Frame_Shift_Del	DEL	GTCA	GTCA	-			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	66	385	0	ENST00000412585.2:c.716_719del	p.Leu239ProfsTer57	p.L239Pfs*57	ENST00000412585	NM_005514.6	239	cTGACc/cc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104712	69104712	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	79	488	0	ENST00000288368.4:c.4556A>G	p.Asn1519Ser	p.N1519S	ENST00000288368	NM_024870.2	1519	aAc/aGc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937186	76937186	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	51	516	0	ENST00000373344.5:c.3562T>C	p.Ser1188Pro	p.S1188P	ENST00000373344	NM_000489.3	1188	Tcc/Ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0043133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	160	713	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	144	327	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934573		P-0043249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	244	678	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0043249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	95	359	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
MED12	9968	MSKCC	GRCh37	X	70345913	70345913	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749801457		P-0043249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	135	598	0	ENST00000374080.3:c.2450G>A	p.Arg817His	p.R817H	ENST00000374080		817	cGc/cAc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681320	88681320	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	76	431	0	ENST00000372037.3:c.1210del	p.Thr404ProfsTer14	p.T404Pfs*14	ENST00000372037	NM_004329.2	404	Acc/cc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257953	19257953	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1179358806		P-0043249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	287	961	1	ENST00000162023.5:c.433G>A	p.Gly145Arg	p.G145R	ENST00000162023		145	Ggg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	148	649	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	61	398	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	39	214	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741849	17741849	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750173588		P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	36	117	1	ENST00000250003.3:c.520G>A	p.Ala174Thr	p.A174T	ENST00000250003	NM_002478.4	174	Gcc/Acc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350983	89350983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	110	776	0	ENST00000301030.4:c.1967G>A	p.Ser656Asn	p.S656N	ENST00000301030	NM_001256183.1	656	aGt/aAt																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73775146	73775146	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	100	580	0	ENST00000254810.4:c.110A>T	p.Lys37Met	p.K37M	ENST00000254810	NM_005324.3	37	aAg/aTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710882	117710886	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGT	CTTGT	-			P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	68	424	0	ENST00000368508.3:c.1386_1390del	p.Lys465AsnfsTer6	p.K465Nfs*6	ENST00000368508	NM_002944.2	462	ccACAAGcc/cccc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739872	41739872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	63	412	0	ENST00000242208.4:c.101A>G	p.Asp34Gly	p.D34G	ENST00000242208	NM_002192.2	34	gAc/gGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859509	151859509	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	90	521	1	ENST00000262189.6:c.11153T>A	p.Ile3718Lys	p.I3718K	ENST00000262189	NM_170606.2	3718	aTa/aAa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0043290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	267	372	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156742	20156742	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0043290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	85	195	0	ENST00000379607.5:c.17-2A>T		p.X6_splice	ENST00000379607	NM_001412.3	6																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	218	367	0				ENST00000310581	NM_198253.2																																																																																
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0043334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	387	599	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																														
RB1	5925	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913305		P-0043334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	623	480	3	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882008		P-0043334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	653	783	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934133	39934133	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	400	695	1	ENST00000378444.4:c.466C>T	p.Gln156Ter	p.Q156*	ENST00000378444	NM_001123385.1	156	Caa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771193709		P-0043334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	290	565	7	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38991131	38991131	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0043334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	329	500	0	ENST00000357387.3:c.503C>G	p.Ser168Ter	p.S168*	ENST00000357387	NM_152756.3	168	tCa/tGa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11318615	11318615	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	190	520	0	ENST00000361445.4:c.198A>T	p.Gln66His	p.Q66H	ENST00000361445	NM_004958.3	66	caA/caT																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201930	102201930	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	147	360	0	ENST00000263464.3:c.1282A>G	p.Arg428Gly	p.R428G	ENST00000263464	NM_001165.4	428	Agg/Ggg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189493	56189493	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769426596		P-0043334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	327	447	0	ENST00000399503.3:c.4525C>T	p.Arg1509Cys	p.R1509C	ENST00000399503	NM_005921.1	1509	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	40	207	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	177	503	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	187	678	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	99	395	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	206	810	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858202	9858202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	68	449	0	ENST00000330684.3:c.3199C>T	p.Arg1067Trp	p.R1067W	ENST00000330684	NM_001134407.1	1067	Cgg/Tgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931862	68931862	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200600940		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	86	553	1	ENST00000288368.4:c.292G>A	p.Glu98Lys	p.E98K	ENST00000288368	NM_024870.2	98	Gaa/Aaa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575023	64575023	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs794728652		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	97	344	0	ENST00000337652.1:c.798+1G>A		p.X266_splice	ENST00000337652	NM_130803.2	266																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302469	15302469	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	100	625	0	ENST00000263388.2:c.803-1G>A		p.X268_splice	ENST00000263388	NM_000435.2	268																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849128	156849128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	159	759	1	ENST00000524377.1:c.2020G>A	p.Asp674Asn	p.D674N	ENST00000524377	NM_002529.3	674	Gat/Aat																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979995	7979995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	149	601	0	ENST00000319144.4:c.1342G>A	p.Glu448Lys	p.E448K	ENST00000319144	NM_001139.2	448	Gag/Aag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230679	46230679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	61	404	0	ENST00000334344.6:c.928C>T	p.Arg310Cys	p.R310C	ENST00000334344	NM_152641.2	310	Cgt/Tgt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391869	139391869	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780963597		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	132	662	1	ENST00000277541.6:c.6322G>A	p.Asp2108Asn	p.D2108N	ENST00000277541	NM_017617.3	2108	Gac/Aac																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273033	115273033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1230709037		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	87	424	0	ENST00000438362.2:c.1340C>T	p.Ser447Phe	p.S447F	ENST00000438362	NM_001242891.1	447	tCt/tTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120478095	120478095	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	83	400	0	ENST00000256646.2:c.3655G>A	p.Gly1219Ser	p.G1219S	ENST00000256646	NM_024408.3	1219	Ggc/Agc																																																																														
FH	2271	MSKCC	GRCh37	1	241680601	241680601	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	77	333	0	ENST00000366560.3:c.148T>A	p.Phe50Ile	p.F50I	ENST00000366560	NM_000143.3	50	Ttc/Atc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415834	49415834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	82	282	0	ENST00000301067.7:c.16513G>A	p.Gly5505Arg	p.G5505R	ENST00000301067	NM_003482.3	5505	Gga/Aga																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924333	112924333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	155	560	0	ENST00000351677.2:c.1279G>A	p.Gly427Ser	p.G427S	ENST00000351677	NM_002834.3	427	Ggc/Agc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636077	28636077	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs988701709		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	84	482	0	ENST00000241453.7:c.295G>A	p.Gly99Arg	p.G99R	ENST00000241453	NM_004119.2	99	Ggg/Agg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514776	103514776	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	79	331	0	ENST00000355739.4:c.1277A>C	p.Glu426Ala	p.E426A	ENST00000355739	NM_000123.3	426	gAg/gCg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40855776	40855776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	101	467	0	ENST00000428826.2:c.2080C>T	p.Pro694Ser	p.P694S	ENST00000428826		694	Ccc/Tcc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688708	47688708	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs985933794		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	119	387	1	ENST00000347630.2:c.592C>T	p.Arg198Trp	p.R198W	ENST00000347630	NM_001007230.1	198	Cgg/Tgg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796033	78796033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	136	598	0	ENST00000306801.3:c.923C>T	p.Pro308Leu	p.P308L	ENST00000306801	NM_020761.2	308	cCc/cTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098477	11098477	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1013942482		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	69	298	0	ENST00000344626.4:c.995C>T	p.Ser332Phe	p.S332F	ENST00000344626	NM_003072.3	332	tCc/tTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375537	15375537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	208	816	1	ENST00000263377.2:c.890C>T	p.Pro297Leu	p.P297L	ENST00000263377	NM_058243.2	297	cCc/cTc																																																																														
AXL	558	MSKCC	GRCh37	19	41763517	41763518	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	168	383	1	ENST00000301178.4:c.2316_2317delinsAA	p.Asp773Asn	p.D773N	ENST00000301178	NM_021913.4	772	gcGGac/gcAAac																																																																														
XPO1	7514	MSKCC	GRCh37	2	61726995	61726995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	76	389	0	ENST00000401558.2:c.443C>T	p.Thr148Ile	p.T148I	ENST00000401558	NM_003400.3	148	aCt/aTt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022453	31022454	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	45	249	0	ENST00000375687.4:c.1938_1939delinsTT	p.Pro647Ser	p.P647S	ENST00000375687	NM_015338.5	646	ggCCcg/ggTTcg																																																																														
EP300	2033	MSKCC	GRCh37	22	41574379	41574381	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-	rs768522046		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	118	581	3	ENST00000263253.7:c.6674_6676del	p.Gln2225del	p.Q2225del	ENST00000263253	NM_001429.3	2222	CAG/-																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41274834	41274835	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	42	297	0	ENST00000349496.5:c.1084_1085delinsAA	p.Gly362Lys	p.G362K	ENST00000349496	NM_001904.3	362	GGa/AAa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170002373	170002373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	83	218	0	ENST00000295797.4:c.1192G>T	p.Gly398Cys	p.G398C	ENST00000295797	NM_002740.5	398	Ggc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557939	187557939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	110	394	0	ENST00000441802.2:c.3772del	p.Glu1258LysfsTer18	p.E1258Kfs*18	ENST00000441802	NM_005245.3	1258	Gaa/aa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38958818	38958818	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	32	254	0	ENST00000357387.3:c.2294C>G	p.Thr765Arg	p.T765R	ENST00000357387	NM_152756.3	765	aCg/aGg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168666	56168666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	65	338	0	ENST00000399503.3:c.1520G>A	p.Ser507Asn	p.S507N	ENST00000399503	NM_005921.1	507	aGt/aAt																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803038	32803038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	339	565	0	ENST00000374899.4:c.838G>A	p.Gly280Arg	p.G280R	ENST00000374899	NM_018833.2	280	Ggg/Agg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818185	32818185	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772241365		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	181	541	0	ENST00000354258.4:c.1340C>T	p.Ala447Val	p.A447V	ENST00000354258	NM_000593.5	447	gCc/gTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729963	41729964	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	106	551	1	ENST00000242208.4:c.565_566delinsAA	p.Gly189Lys	p.G189K	ENST00000242208	NM_002192.2	189	GGg/AAg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730102	41730102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	96	368	0	ENST00000242208.4:c.427G>A	p.Glu143Lys	p.E143K	ENST00000242208	NM_002192.2	143	Gaa/Aaa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38279452	38279452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	88	460	0	ENST00000425967.3:c.1037G>A	p.Gly346Glu	p.G346E	ENST00000425967	NM_001174067.1	346	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974675	21974675	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	123	403	0	ENST00000304494.5:c.150+2T>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974675	21974675	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	123	403	0	ENST00000304494.5:c.150+2T>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239870	98239870	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1131690999		P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	109	535	0	ENST00000331920.6:c.1462T>C	p.Cys488Arg	p.C488R	ENST00000331920	NM_000264.3	488	Tgc/Cgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418173	139418173	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	135	649	0	ENST00000277541.6:c.399G>A	p.Trp133Ter	p.W133*	ENST00000277541	NM_017617.3	133	tgG/tgA																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22221726	22221726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	10	27	0	ENST00000215832.6:c.5C>T	p.Ala2Val	p.A2V	ENST00000215832	NM_002745.4	2	gCg/gTg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0043475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	272	460	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268715	98268715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	299	441	0	ENST00000331920.6:c.368C>G	p.Thr123Ser	p.T123S	ENST00000331920	NM_000264.3	123	aCc/aGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845607	72845607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	398	648	0	ENST00000268489.5:c.3733C>T	p.Gln1245Ter	p.Q1245*	ENST00000268489	NM_006885.3	1245	Cag/Tag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659743	227659743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	218	476	0	ENST00000305123.5:c.3712C>G	p.Pro1238Ala	p.P1238A	ENST00000305123	NM_005544.2	1238	Cca/Gca																																																																														
APC	324	MSKCC	GRCh37	5	112163695	112163696	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0043475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	65	244	0	ENST00000257430.4:c.1618_1619del	p.Leu540ThrfsTer19	p.L540Tfs*19	ENST00000257430	NM_000038.5	540	TTa/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	760	651	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	328	298	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41101050	41101050	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192944843		P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	362	677	0	ENST00000373198.4:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000373198	NM_133170.3	436	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	129	282	0	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472561	88472561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	274	597	0	ENST00000360948.2:c.1994C>T	p.Ser665Leu	p.S665L	ENST00000360948	NM_001012338.2	665	tCg/tTg																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526441	66526441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	233	399	1	ENST00000358598.2:c.997C>T	p.Arg333Cys	p.R333C	ENST00000358598	NM_212471.2	333	Cgt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058542	69058542	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	68	660	4	ENST00000288368.4:c.4190del	p.Asn1397MetfsTer16	p.N1397Mfs*16	ENST00000288368	NM_024870.2	1396	Aaa/aa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11316135	11316135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	357	677	0	ENST00000361445.4:c.619G>A	p.Glu207Lys	p.E207K	ENST00000361445	NM_004958.3	207	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481905	56481905	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	229	701	0	ENST00000267101.3:c.833C>G	p.Thr278Ser	p.T278S	ENST00000267101	NM_001982.3	278	aCc/aGc																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73774689	73774689	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	44	87	0	ENST00000254810.4:c.398G>C	p.Gly133Ala	p.G133A	ENST00000254810	NM_005324.3	133	gGa/gCa																																																																														
CASP8	841	MSKCC	GRCh37	2	202123044	202123044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	222	468	0	ENST00000358485.4:c.90C>G	p.His30Gln	p.H30Q	ENST00000358485	NM_001080125.1	30	caC/caG																																																																														
CUL3	8452	MSKCC	GRCh37	2	225362543	225362543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	134	432	0	ENST00000264414.4:c.1634G>A	p.Gly545Asp	p.G545D	ENST00000264414	NM_003590.4	545	gGt/gAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101041	41101041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	369	673	1	ENST00000373198.4:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000373198	NM_133170.3	439	Gag/Aag																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374757	149374757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	127	432	1	ENST00000360632.3:c.337C>T	p.Leu113Phe	p.L113F	ENST00000360632	NM_015472.4	113	Ctc/Ttc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31423045	31423045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	75	470	0	ENST00000344624.3:c.3268G>A	p.Glu1090Lys	p.E1090K	ENST00000344624		1090	Gag/Aag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38946569	38946569	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0043491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	41	325	2	ENST00000357387.3:c.4399+1G>A		p.X1467_splice	ENST00000357387	NM_152756.3	1467																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	46	491	2	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602530	10602530	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777308626		P-0043527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	49	471	1	ENST00000171111.5:c.1048G>A	p.Gly350Ser	p.G350S	ENST00000171111	NM_203500.1	350	Ggc/Agc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517201		P-0043527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	67	415	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928074	178928074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	30	391	0	ENST00000263967.3:c.1352G>T	p.Gly451Val	p.G451V	ENST00000263967	NM_006218.2	451	gGa/gTa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325157	123325174	+	inframe_deletion	In_Frame_Del	DEL	CGACTCCCCTGGCGCAGC	CGACTCCCCTGGCGCAGC	-			P-0043527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	105	428	0	ENST00000358487.5:c.154_171del	p.Ala52_Ser57del	p.A52_S57del	ENST00000358487	NM_000141.4	52	GCTGCGCCAGGGGAGTCG/-																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197365	94197365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781646		P-0043527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	42	374	0	ENST00000323929.3:c.1139G>A	p.Arg380His	p.R380H	ENST00000323929	NM_005591.3	380	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435072	49435072	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	58	675	0	ENST00000301067.7:c.6481del	p.Leu2161SerfsTer103	p.L2161Sfs*103	ENST00000301067	NM_003482.3	2161	Ctc/tc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573228	64573228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1114167474		P-0043557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	65	549	0	ENST00000337652.1:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000337652	NM_130803.2	360	cGg/cAg																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66520090	66520167	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCTTAATGTTTGAAATTCACGGAAGAGACATGTGAAATGTAACACGAGGCCTTCTCTCTTTTGCAGTGATATTTTTG	AGCTTAATGTTTGAAATTCACGGAAGAGACATGTGAAATGTAACACGAGGCCTTCTCTCTTTTGCAGTGATATTTTTG	-			P-0043557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	17	309	0	ENST00000358598.2:c.441-66_452del		p.X147_splice	ENST00000358598	NM_212471.2	147																																																																															
NSD1	64324	MSKCC	GRCh37	5	176639010	176639010	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	49	620	0	ENST00000439151.2:c.3610C>G	p.Pro1204Ala	p.P1204A	ENST00000439151	NM_022455.4	1204	Cca/Gca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692900	89692900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	152	339	0	ENST00000371953.3:c.384G>T	p.Lys128Asn	p.K128N	ENST00000371953	NM_000314.4	128	aaG/aaT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911475	39911475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	193	258	1	ENST00000378444.4:c.5155G>C	p.Glu1719Gln	p.E1719Q	ENST00000378444	NM_001123385.1	1719	Gaa/Caa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953267	17953267	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	203	618	1	ENST00000458235.1:c.719T>A	p.Met240Lys	p.M240K	ENST00000458235	NM_000215.3	240	aTg/aAg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131930587	131930587	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	55	267	0	ENST00000265335.6:c.1820A>G	p.Asn607Ser	p.N607S	ENST00000265335		607	aAt/aGt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41740034	41740669	+	splice_acceptor_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	CGCGCAGGTTTTTTTGTGTGTGTGGATTTTTTTATTTTTTTTTTTGGTGTTTTTTTTTTCCTTCTCCTCTTCAGCAAATTCTCTGGAACAAGAACAAAAAGTTTTCTGTGAAGTTTTGTTTGCAGGTTCCTCTCTGAATGCAGTCAGTGCTGTAGGTTTGTGGCTGTCAGGGAGGAGAGTTCTGACTGTCTCCGAGTAAGAGAGAAGGAAGGAGGGAGGGAGGGAGGGAGACAGGGAGGGAGGGAGAGACAGGGTGGCGGGGAGACAGACAGAGACAGAGAGAGAGGATGGGAGGGAGACAGAGACAGAGAGAGAGGAGAGAGGGGGAGAGAAGAGAGAGGGAAAGAAGGGGGAGAGAGAGGGAGAGAGGGAGGGAAGGGAGGGGGAGAGGGAGAGAGGGAAAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGATTGGCCCTAAGTAAGTGAGTGAATGGAGAGGGAGGGAGTTTGCTGTGAGTAGGGCTGTGATTAGGGAGGGAGGGACAGCCCGTTTTCTGACAGGCTGCTCTCCTTCTGCTCTTAGCTTCCTCACAGACACCTCTCTTCAAATATCACCATTTTCGGGGGTTCTACTTTCTCTTCTAAAATAAATTATC	CGCGCAGGTTTTTTTGTGTGTGTGGATTTTTTTATTTTTTTTTTTGGTGTTTTTTTTTTCCTTCTCCTCTTCAGCAAATTCTCTGGAACAAGAACAAAAAGTTTTCTGTGAAGTTTTGTTTGCAGGTTCCTCTCTGAATGCAGTCAGTGCTGTAGGTTTGTGGCTGTCAGGGAGGAGAGTTCTGACTGTCTCCGAGTAAGAGAGAAGGAAGGAGGGAGGGAGGGAGGGAGACAGGGAGGGAGGGAGAGACAGGGTGGCGGGGAGACAGACAGAGACAGAGAGAGAGGATGGGAGGGAGACAGAGACAGAGAGAGAGGAGAGAGGGGGAGAGAAGAGAGAGGGAAAGAAGGGGGAGAGAGAGGGAGAGAGGGAGGGAAGGGAGGGGGAGAGGGAGAGAGGGAAAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGATTGGCCCTAAGTAAGTGAGTGAATGGAGAGGGAGGGAGTTTGCTGTGAGTAGGGCTGTGATTAGGGAGGGAGGGACAGCCCGTTTTCTGACAGGCTGCTCTCCTTCTGCTCTTAGCTTCCTCACAGACACCTCTCTTCAAATATCACCATTTTCGGGGGTTCTACTTTCTCTTCTAAAATAAATTATC	-			P-0043565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	82	193	0	ENST00000242208.4:c.-143-554_-62del		p.X48_splice	ENST00000242208	NM_002192.2	48																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	91	441	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	55	347	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918694	44918694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	11	238	0	ENST00000377967.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000377967	NM_021140.2	393	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488228	56488228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	96	586	0	ENST00000267101.3:c.1747C>T	p.Pro583Ser	p.P583S	ENST00000267101	NM_001982.3	583	Ccc/Tcc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372065	45372065	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	59	487	0	ENST00000262160.6:c.1104G>A	p.Trp368Ter	p.W368*	ENST00000262160	NM_005901.5	368	tgG/tgA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101185	27101198	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGGTTGCTCAGC	TGAGGTTGCTCAGC	G			P-0043568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	96	776	1	ENST00000324856.7:c.4467_4480delinsG	p.Glu1490LysfsTer11	p.E1490Kfs*11	ENST00000324856	NM_006015.4	1489	gcTGAGGTTGCTCAGCaa/gcGaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577606	7577618	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACCTAGGAGATA	AACCTAGGAGATA	-			P-0043571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	186	548	0	ENST00000269305.4:c.673-10_675del		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
ABL1	25	MSKCC	GRCh37	9	133748402	133748402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	176	500	0	ENST00000318560.5:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000318560	NM_005157.4	355	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579554	7579555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	193	792	0	ENST00000269305.4:c.132dup	p.Leu45AlafsTer7	p.L45Afs*7	ENST00000269305	NM_001126112.2	44	-/G																																																																														
ALK	238	MSKCC	GRCh37	2	30143236	30143236	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs765290844		P-0043634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	22	597	0	ENST00000389048.3:c.290C>G	p.Pro97Arg	p.P97R	ENST00000389048	NM_004304.4	97	cCg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	118	441	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	256	791	0	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591800	48591800	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	141	384	0	ENST00000342988.3:c.963del	p.Glu321AspfsTer15	p.E321Dfs*15	ENST00000342988	NM_005359.5	321	gaG/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	190	337	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	389	818	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	112	259	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	247	480	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	215	265	0	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	55	146	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	109	274	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133574	55133574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373948582		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	132	396	0	ENST00000257290.5:c.878G>A	p.Arg293His	p.R293H	ENST00000257290	NM_006206.4	293	cGc/cAc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245712	46245712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752984515		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	90	356	0	ENST00000334344.6:c.3806C>T	p.Pro1269Leu	p.P1269L	ENST00000334344	NM_152641.2	1269	cCg/cTg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871000	12871000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121917832		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	42	343	0	ENST00000228872.4:c.227G>A	p.Trp76Ter	p.W76*	ENST00000228872	NM_004064.3	76	tGg/tAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094422	27094422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	93	467	0	ENST00000324856.7:c.3130G>A	p.Val1044Met	p.V1044M	ENST00000324856	NM_006015.4	1044	Gtg/Atg																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025618	1025618	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1410408833		P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	106	566	0	ENST00000358495.3:c.757G>A	p.Ala253Thr	p.A253T	ENST00000358495	NM_134424.2	253	Gcc/Acc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265666	10265666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	90	422	0	ENST00000340748.4:c.1511A>G	p.Glu504Gly	p.E504G	ENST00000340748		504	gAg/gGg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067309	37067309	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	82	329	0	ENST00000231790.2:c.1220A>G	p.Gln407Arg	p.Q407R	ENST00000231790	NM_000249.3	407	cAg/cGg																																																																														
APC	324	MSKCC	GRCh37	5	112175643	112175644	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	G			P-0043722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	73	236	0	ENST00000257430.4:c.4352_4353delinsG	p.Glu1451GlyfsTer22	p.E1451Gfs*22	ENST00000257430	NM_000038.5	1451	gAA/gG																																																																														
MST1	4485	MSKCC	GRCh37	3	49721606	49721606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138238101		P-0043787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	10	157	0	ENST00000449682.2:c.2033C>T	p.Pro678Leu	p.P678L	ENST00000449682	NM_020998.3	678	cCa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858705	9858705	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759145938		P-0043787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	289	346	0	ENST00000330684.3:c.2696G>A	p.Arg899Gln	p.R899Q	ENST00000330684	NM_001134407.1	899	cGg/cAg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197396	94197396	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	117	369	0	ENST00000323929.3:c.1108A>G	p.Ser370Gly	p.S370G	ENST00000323929	NM_005591.3	370	Agt/Ggt																																																																														
ATR	545	MSKCC	GRCh37	3	142172066	142172066	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	34	315	0	ENST00000350721.4:c.7665G>C	p.Lys2555Asn	p.K2555N	ENST00000350721	NM_001184.3	2555	aaG/aaC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249012	55249013	+	inframe_insertion	In_Frame_Ins	INS	-	-	AACCCCGGT			P-0043787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	596	570	0	ENST00000275493.2:c.2316_2317insGGTAACCCC	p.Pro772_His773insGlyAsnPro	p.P772_H773insGNP	ENST00000275493	NM_005228.3	770	-/AACCCCGGT																																																																														
LYN	4067	MSKCC	GRCh37	8	56863025	56863025	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	135	340	0	ENST00000519728.1:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000519728	NM_002350.3	98	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0043838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	417	1079	1	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
TOP1	7150	MSKCC	GRCh37	20	39729929	39729929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	128	680	0	ENST00000361337.2:c.1244C>A	p.Ser415Tyr	p.S415Y	ENST00000361337	NM_003286.2	415	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	357	967	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579362	7579362	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057523496		P-0043870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	63	804	0	ENST00000269305.4:c.325T>G	p.Phe109Val	p.F109V	ENST00000269305	NM_001126112.2	109	Ttc/Gtc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2978321	2978321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs138920531		P-0043870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	60	687	0	ENST00000396946.4:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000396946	NM_032415.4	337	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	202	666	2	ENST00000269305.4:c.833del	p.Pro278LeufsTer67	p.P278Lfs*67	ENST00000269305	NM_001126112.2	278	cCt/ct																																																																														
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	53	238	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29661945	29661945	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854552		P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	114	372	0	ENST00000358273.4:c.5902C>T	p.Arg1968Ter	p.R1968*	ENST00000358273	NM_001042492.2	1968	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913357		P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	127	325	0	ENST00000288602.6:c.1405G>A	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Aga																																																																														
ABL1	25	MSKCC	GRCh37	9	133738156	133738156	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756003964		P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	124	405	0	ENST00000318560.5:c.556G>A	p.Val186Ile	p.V186I	ENST00000318560	NM_005157.4	186	Gtc/Atc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851748	134851748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	65	572	0	ENST00000398015.3:c.1154G>A	p.Gly385Asp	p.G385D	ENST00000398015	NM_004441.4	385	gGc/gAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591062	67591070	+	inframe_deletion	In_Frame_Del	DEL	AGGCAGCTG	AGGCAGCTG	-			P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	64	217	0	ENST00000274335.5:c.1657_1665del	p.Ala553_Glu555del	p.A553_E555del	ENST00000274335		552	cAGGCAGCTGag/cag																																																																														
APC	324	MSKCC	GRCh37	5	112175512	112175512	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	24	312	0	ENST00000257430.4:c.4221del	p.Ser1407ArgfsTer8	p.S1407Rfs*8	ENST00000257430	NM_000038.5	1407	agT/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0043953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	301	457	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	191	367	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs867114783		P-0043961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	331	680	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604765	48604766	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0043961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	163	319	0	ENST00000342988.3:c.1589_1590del	p.His530ProfsTer46	p.H530Pfs*46	ENST00000342988	NM_005359.5	529	ttACac/ttac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950036	44950036	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	280	509	0	ENST00000377967.4:c.3807del	p.Met1270TrpfsTer22	p.M1270Wfs*22	ENST00000377967	NM_021140.2	1269	Ccc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757274881		P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	418	1102	1	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519704	176519704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143108014		P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	430	915	3	ENST00000292408.4:c.976G>A	p.Glu326Lys	p.E326K	ENST00000292408	NM_213647.1	326	Gag/Aag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562837	95562837	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	134	400	0	ENST00000343455.3:c.4420A>G	p.Thr1474Ala	p.T1474A	ENST00000343455	NM_177438.2	1474	Acc/Gcc																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514229	69514229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	138	835	0	ENST00000294312.3:c.452G>C	p.Arg151Pro	p.R151P	ENST00000294312	NM_005117.2	151	cGg/cCg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348892	118348912	+	inframe_deletion	In_Frame_Del	DEL	GCAATATAAAGAAGCAGTGCT	GCAATATAAAGAAGCAGTGCT	-			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	37	218	0	ENST00000534358.1:c.3549_3569del	p.Asn1183_Cys1189del	p.N1183_C1189del	ENST00000534358	NM_005933.3	1182	cGCAATATAAAGAAGCAGTGCTgc/cgc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21626574	21626574	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	34	417	1	ENST00000421138.2:c.1358G>C	p.Cys453Ser	p.C453S	ENST00000421138		453	tGt/tCt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858909	57858913	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAG	CCCAG	-			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	128	895	0	ENST00000228682.2:c.410_414del	p.Ala137AspfsTer20	p.A137Dfs*20	ENST00000228682	NM_005269.2	135	ttCCCAGcc/ttcc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107939	30107939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	85	687	1	ENST00000331968.5:c.868C>A	p.Leu290Ile	p.L290I	ENST00000331968	NM_002742.2	290	Ctt/Att																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2220661	2220661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202208831		P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	105	869	1	ENST00000326181.6:c.278G>A	p.Arg93His	p.R93H	ENST00000326181	NM_032271.2	93	cGc/cAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29557896	29557896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	13	178	0	ENST00000358273.4:c.3150G>A	p.Met1050Ile	p.M1050I	ENST00000358273	NM_001042492.2	1050	atG/atA																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18277948	18277948	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	138	598	0	ENST00000222254.8:c.1568T>A	p.Leu523Gln	p.L523Q	ENST00000222254	NM_005027.3	523	cTg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912056	50912056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	197	1108	0	ENST00000440232.2:c.1790C>G	p.Pro597Arg	p.P597R	ENST00000440232	NM_002691.3	597	cCc/cGc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873042	134873042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	129	682	0	ENST00000398015.3:c.1346G>A	p.Ser449Asn	p.S449N	ENST00000398015	NM_004441.4	449	aGc/aAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911589	134911589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	84	596	0	ENST00000398015.3:c.2054G>C	p.Gly685Ala	p.G685A	ENST00000398015	NM_004441.4	685	gGt/gCt																																																																														
IRF4	3662	MSKCC	GRCh37	6	401640	401640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	98	692	0	ENST00000380956.4:c.962C>G	p.Pro321Arg	p.P321R	ENST00000380956	NM_001195286.1	321	cCc/cGc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163807	32163807	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs751250725		P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	147	762	0	ENST00000375023.3:c.5419G>C	p.Ala1807Pro	p.A1807P	ENST00000375023	NM_004557.3	1807	Gct/Cct																																																																														
PMS2	5395	MSKCC	GRCh37	7	6029454	6029454	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	179	471	1	ENST00000265849.7:c.1121A>T	p.Gln374Leu	p.Q374L	ENST00000265849	NM_000535.5	374	cAg/cTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499694	8499694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	36	606	2	ENST00000356435.5:c.2275C>A	p.Pro759Thr	p.P759T	ENST00000356435		759	Ccc/Acc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748124	72748142	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCAGCCACTGGTTCGAG	CGCCAGCCACTGGTTCGAG	AC			P-0044041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	68	582	2	ENST00000357731.5:c.36_54delinsGT	p.Cys12TrpfsTer42	p.C12Wfs*42	ENST00000357731	NM_173808.2	12	tgCTCGAACCAGTGGCTGGCG/tgGT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	289	603	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	224	597	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	144	207	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	221	371	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492689	56492689	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0044082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	124	404	0	ENST00000407977.2:c.250C>T	p.Gln84Ter	p.Q84*	ENST00000407977		84	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578430	7578431	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0044082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	189	663	0	ENST00000269305.4:c.499_500del	p.Gln167AlafsTer13	p.Q167Afs*13	ENST00000269305	NM_001126112.2	167	CAg/g																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593477	48593477	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	119	294	0	ENST00000342988.3:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000342988	NM_005359.5	410	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244097	153244097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	185	398	0	ENST00000281708.4:c.2060G>A	p.Gly687Glu	p.G687E	ENST00000281708	NM_033632.3	687	gGg/gAg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123246898	123246898	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	155	474	0	ENST00000358487.5:c.2027T>G	p.Phe676Cys	p.F676C	ENST00000358487	NM_000141.4	676	tTt/tGt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028666	12028666	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	144	399	1	ENST00000353533.5:c.869T>G	p.Val290Gly	p.V290G	ENST00000353533	NM_003010.3	290	gTc/gGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216379	36216379	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	251	718	0	ENST00000222270.7:c.3643-1G>A		p.X1215_splice	ENST00000222270	NM_014727.1	1215																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729549	41729549	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	294	526	0	ENST00000242208.4:c.980T>A	p.Phe327Tyr	p.F327Y	ENST00000242208	NM_002192.2	327	tTt/tAt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115975	8115975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	41	368	0	ENST00000346208.3:c.1321G>A	p.Ala441Thr	p.A441T	ENST00000346208		441	Gcc/Acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830138	72830138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	116	636	0	ENST00000268489.5:c.6443C>A	p.Pro2148His	p.P2148H	ENST00000268489	NM_006885.3	2148	cCt/cAt																																																																														
CBL	867	MSKCC	GRCh37	11	119148963	119148963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	138	489	0	ENST00000264033.4:c.1183C>A	p.Pro395Thr	p.P395T	ENST00000264033	NM_005188.3	395	Ccc/Acc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954009	32954009	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs80359159		P-0044128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	82	460	0	ENST00000380152.3:c.9076C>T	p.Gln3026Ter	p.Q3026*	ENST00000380152		3026	Cag/Tag																																																																														
EZH1	2145	MSKCC	GRCh37	17	40855769	40855773	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTT	CAGTT	-			P-0044128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	120	517	0	ENST00000428826.2:c.2083_2087del	p.Asn695LeufsTer30	p.N695Lfs*30	ENST00000428826		695	AACTGt/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	36	360	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0044210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	89	575	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202806	16202806	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1235481729		P-0044210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	43	483	0	ENST00000375759.3:c.514G>C	p.Asp172His	p.D172H	ENST00000375759	NM_015001.2	172	Gat/Cat																																																																														
CDC73	79577	MSKCC	GRCh37	1	193091332	193091332	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0044210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	42	242	0	ENST00000367435.3:c.2T>C	p.Met1?	p.M1?	ENST00000367435	NM_024529.4	1	aTg/aCg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383700	42383700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	71	617	0	ENST00000221972.3:c.475C>T	p.Pro159Ser	p.P159S	ENST00000221972	NM_021601.3	159	Cct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	44	407	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	86	893	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575089	48575089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	36	420	0	ENST00000342988.3:c.283T>C	p.Tyr95His	p.Y95H	ENST00000342988	NM_005359.5	95	Tat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105809	27105810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	51	495	0	ENST00000324856.7:c.5421dup	p.Lys1808Ter	p.K1808*	ENST00000324856	NM_006015.4	1807	agt/agTt																																																																														
RB1	5925	MSKCC	GRCh37	13	48955417	48955417	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs748352319		P-0044222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	46	275	0	ENST00000267163.4:c.1535del	p.Leu512CysfsTer7	p.L512Cfs*7	ENST00000267163	NM_000321.2	511	gaT/ga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	143	349	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912658		P-0044223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	321	819	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag																																																																														
CCND2	894	MSKCC	GRCh37	12	4398032	4398032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	259	579	0	ENST00000261254.3:c.596C>T	p.Pro199Leu	p.P199L	ENST00000261254	NM_001759.3	199	cCg/cTg																																																																														
SESN3	143686	MSKCC	GRCh37	11	94923059	94923059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	163	532	0	ENST00000536441.1:c.409G>T	p.Gly137Cys	p.G137C	ENST00000536441	NM_144665.3	137	Ggt/Tgt																																																																														
PGR	5241	MSKCC	GRCh37	11	100999779	100999779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	64	847	0	ENST00000325455.5:c.23G>A	p.Gly8Asp	p.G8D	ENST00000325455	NM_001202474.3	8	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0044296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	237	330	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691187		P-0044296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	207	341	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691187		P-0044296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	207	341	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039708	47039708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	277	664	1	ENST00000329236.7:c.926G>A	p.Arg309Lys	p.R309K	ENST00000329236	NM_001204466.1	309	aGg/aAg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63531823	63531823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	231	433	0	ENST00000307078.5:c.2158C>G	p.Gln720Glu	p.Q720E	ENST00000307078	NM_004655.3	720	Cag/Gag																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170015161	170015161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	99	405	0	ENST00000295797.4:c.1567C>G	p.Arg523Gly	p.R523G	ENST00000295797	NM_002740.5	523	Cga/Gga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	294	376	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0044324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	26	586	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941858	44941858	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	87	220	0	ENST00000377967.4:c.3182C>G	p.Ser1061Ter	p.S1061*	ENST00000377967	NM_021140.2	1061	tCa/tGa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974898	15974898	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1219026707		P-0044324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	121	451	1	ENST00000268712.3:c.3977G>A	p.Arg1326Gln	p.R1326Q	ENST00000268712	NM_006311.3	1326	cGa/cAa																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724427	112724427	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	323	622	0	ENST00000369452.4:c.311G>C	p.Arg104Pro	p.R104P	ENST00000369452	NM_007373.3	104	cGt/cCt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988251	36988251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	335	563	0	ENST00000354822.5:c.402G>A	p.Met134Ile	p.M134I	ENST00000354822	NM_001079668.2	134	atG/atA																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966344	25966352	+	inframe_deletion	In_Frame_Del	DEL	AGTCACTAA	AGTCACTAA	-			P-0044324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	296	719	0	ENST00000435504.4:c.2854_2862del	p.Leu952_Thr954del	p.L952_T954del	ENST00000435504		952	TTAGTGACT/-																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198268433	198268433	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	25	507	0	ENST00000335508.6:c.1595T>G	p.Phe532Cys	p.F532C	ENST00000335508	NM_012433.2	532	tTt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112162840	112162840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	129	453	0	ENST00000257430.4:c.1444G>A	p.Asp482Asn	p.D482N	ENST00000257430	NM_000038.5	482	Gac/Aac																																																																														
RB1	5925	MSKCC	GRCh37	13	49027248	49027248	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0044346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	67	325	0	ENST00000267163.4:c.1814+1G>A		p.X605_splice	ENST00000267163	NM_000321.2	605																																																																															
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0044346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	175	647	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851573	134851573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1281577436		P-0044346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	45	507	0	ENST00000398015.3:c.979C>T	p.Arg327Cys	p.R327C	ENST00000398015	NM_004441.4	327	Cgc/Tgc																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778167	27778167	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	44	756	0	ENST00000369163.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000369163	NM_003536.2	106	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0044367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	216	517	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913355		P-0044367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	113	325	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120178	70120178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057518216		P-0044367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	249	337	0	ENST00000245479.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000245479	NM_000346.3	394	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175215	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0044367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	116	201	0	ENST00000257430.4:c.3925_3926del	p.Glu1309LysfsTer5	p.E1309Kfs*5	ENST00000257430	NM_000038.5	1308	aaAGaa/aaaa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910752	114910770	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTAGGTTCCCTCCCCATA	TCTAGGTTCCCTCCCCATA	-			P-0044367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	130	411	0	ENST00000543371.1:c.876-4_890del		p.X292_splice	ENST00000543371	NM_001198531.1	292																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573628	48573628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	109	313	0	ENST00000342988.3:c.212G>A	p.Cys71Tyr	p.C71Y	ENST00000342988	NM_005359.5	71	tGt/tAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	171	203	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0044368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	461	404	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0044368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	228	629	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	133	372	0	ENST00000300305.3:c.367dup	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	140	473	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag																																																																														
REL	5966	MSKCC	GRCh37	2	61128201	61128201	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	43	197	0	ENST00000295025.8:c.377G>C	p.Gly126Ala	p.G126A	ENST00000295025	NM_002908.2	126	gGa/gCa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6038788	6038788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	155	593	0	ENST00000265849.7:c.656G>T	p.Gly219Val	p.G219V	ENST00000265849	NM_000535.5	219	gGa/gTa																																																																														
LYN	4067	MSKCC	GRCh37	8	56863331	56863331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	115	432	0	ENST00000519728.1:c.475G>A	p.Glu159Lys	p.E159K	ENST00000519728	NM_002350.3	159	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107017	27107017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	50	446	1	ENST00000324856.7:c.6628C>T	p.Gln2210Ter	p.Q2210*	ENST00000324856	NM_006015.4	2210	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	47	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647685	2647685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	58	602	1	ENST00000342085.4:c.1588G>A	p.Gly530Arg	p.G530R	ENST00000342085	NM_002613.4	530	Ggg/Agg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270531	98270531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143494325		P-0044391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	22	316	1	ENST00000331920.6:c.113G>A	p.Gly38Glu	p.G38E	ENST00000331920	NM_000264.3	38	gGg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936093	178936096	+	missense_variant	Missense_Mutation	ONP	GCAG	GCAG	TCAC			P-0044391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	135	542	1	ENST00000263967.3:c.1635_1638delinsTCAC	p.Glu545_Gln546delinsAspHis	p.E545_Q546delinsDH	ENST00000263967	NM_006218.2	545	gaGCAG/gaTCAC																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0044393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	91	476	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	221	703	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0044393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	114	445	0	ENST00000269305.4:c.686_687del	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30047493	30047493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	68	302	0	ENST00000331968.5:c.2508C>A	p.His836Gln	p.H836Q	ENST00000331968	NM_002742.2	836	caC/caA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0044407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	101	311	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0044407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	191	200	1	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0044407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	10	308	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs863224683		P-0044407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	648	788	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98248030	98248030	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772368023		P-0044407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	196	460	0	ENST00000331920.6:c.521C>T	p.Ala174Val	p.A174V	ENST00000331920	NM_000264.3	174	gCg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0044407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	49	509	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55564477	55564477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	160	417	0	ENST00000288135.5:c.365G>A	p.Arg122His	p.R122H	ENST00000288135	NM_000222.2	122	cGc/cAc																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793877	89793877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	124	295	0	ENST00000336032.3:c.946G>A	p.Ala316Thr	p.A316T	ENST00000336032	NM_006813.2	316	Gca/Aca																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654616	67654616	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1259610303		P-0044407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	142	362	1	ENST00000264010.4:c.1103G>A	p.Arg368His	p.R368H	ENST00000264010	NM_006565.3	368	cGt/cAt																																																																														
CD276	80381	MSKCC	GRCh37	15	73996195	73996195	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs765178509		P-0044407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	209	599	1	ENST00000318443.5:c.929G>T	p.Arg310Leu	p.R310L	ENST00000318443	NM_001024736.1	310	cGc/cTc																																																																														
SRC	6714	MSKCC	GRCh37	20	36024600	36024600	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755567292		P-0044407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	538	727	0	ENST00000358208.4:c.589G>A	p.Ala197Thr	p.A197T	ENST00000358208		197	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	64	357	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	103	517	1	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	192	574	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	93	640	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	31	316	1	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	50	609	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	77	410	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	82	481	6	ENST00000378444.4:c.4862del	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	68	479	0	ENST00000237289.4:c.1368del	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760959844		P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	31	350	1	ENST00000268489.5:c.2287dup	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041630	14041630	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368096448		P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	73	330	0	ENST00000311895.7:c.2177G>A	p.Arg726His	p.R726H	ENST00000311895	NM_005236.2	726	cGc/cAc																																																																														
FYN	2534	MSKCC	GRCh37	6	112041037	112041037	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761032788		P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	33	440	0	ENST00000368678.4:c.218C>T	p.Thr73Met	p.T73M	ENST00000368678		73	aCg/aTg																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2093651	2093651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	55	841	1	ENST00000219066.1:c.626C>T	p.Ala209Val	p.A209V	ENST00000219066	NM_002528.5	209	gCc/gTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120469214	120469214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587688280		P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	75	455	0	ENST00000256646.2:c.3913G>A	p.Val1305Ile	p.V1305I	ENST00000256646	NM_024408.3	1305	Gtc/Atc																																																																														
TET1	80312	MSKCC	GRCh37	10	70450715	70450715	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576727317		P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	89	536	0	ENST00000373644.4:c.5555C>T	p.Pro1852Leu	p.P1852L	ENST00000373644	NM_030625.2	1852	cCg/cTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992291	72992291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	136	790	2	ENST00000268489.5:c.1754G>A	p.Gly585Asp	p.G585D	ENST00000268489	NM_006885.3	585	gGc/gAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716325	52716325	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	98	613	0	ENST00000322088.6:c.769T>G	p.Trp257Gly	p.W257G	ENST00000322088	NM_014225.5	257	Tgg/Ggg																																																																														
TET2	54790	MSKCC	GRCh37	4	106164017	106164017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	55	285	0	ENST00000380013.4:c.3527G>T	p.Arg1176Met	p.R1176M	ENST00000380013	NM_001127208.2	1176	aGg/aTg																																																																														
MYC	4609	MSKCC	GRCh37	8	128750951	128750953	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-			P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	51	528	0	ENST00000377970.2:c.488_490del	p.Lys163_Leu164delinsMet	p.K163_L164delinsM	ENST00000377970	NM_002467.4	163	aAGCtg/atg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760750	133760750	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764616226		P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	49	791	0	ENST00000318560.5:c.3073G>A	p.Gly1025Ser	p.G1025S	ENST00000318560	NM_005157.4	1025	Ggc/Agc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815613	139815613	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374009362		P-0044416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	51	595	1	ENST00000247668.2:c.1084G>A	p.Ala362Thr	p.A362T	ENST00000247668	NM_021138.3	362	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	199	383	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0044438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	1112	750	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0044438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	39	237	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
NUP93	9688	MSKCC	GRCh37	16	56878417	56878417	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs190188561		P-0044438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	83	393	0	ENST00000308159.5:c.2356C>T	p.Arg786Ter	p.R786*	ENST00000308159	NM_014669.4	786	Cga/Tga																																																																														
MLH1	4292	MSKCC	GRCh37	3	37083797	37083797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	65	350	0	ENST00000231790.2:c.1706C>A	p.Ala569Asp	p.A569D	ENST00000231790	NM_000249.3	569	gCc/gAc																																																																														
FAM175A	0	MSKCC	GRCh37	4	84403340	84403340	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	86	376	0	ENST00000321945.7:c.145C>T	p.Gln49Ter	p.Q49*	ENST00000321945	NM_139076.2	49	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	242	624	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	112	260	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672258	86672261	+	frameshift_variant	Frame_Shift_Del	DEL	ATGA	ATGA	-			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	178	357	0	ENST00000274376.6:c.2063_2066del	p.Glu688GlyfsTer10	p.E688Gfs*10	ENST00000274376	NM_002890.2	687	gATGAa/ga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974786	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	39	134	0	ENST00000304494.5:c.41_44del	p.Asp14GlyfsTer11	p.D14Gfs*11	ENST00000304494	NM_000077.4	14	gACTGg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974786	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	39	134	0	ENST00000304494.5:c.41_44del	p.Asp14GlyfsTer11	p.D14Gfs*11	ENST00000304494	NM_000077.4	14	gACTGg/gg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390906	139390906	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	271	828	0	ENST00000277541.6:c.7285C>G	p.Leu2429Val	p.L2429V	ENST00000277541	NM_017617.3	2429	Ctg/Gtg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057813	27057814	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs370698486		P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	190	758	0	ENST00000324856.7:c.1523dup	p.Pro509ThrfsTer114	p.P509Tfs*114	ENST00000324856	NM_006015.4	507	-/C																																																																														
PGR	5241	MSKCC	GRCh37	11	100999785	100999785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	48	671	0	ENST00000325455.5:c.17C>G	p.Ala6Gly	p.A6G	ENST00000325455	NM_001202474.3	6	gCa/gGa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3645634	3645634	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	49	686	0	ENST00000294008.3:c.1985A>C	p.Lys662Thr	p.K662T	ENST00000294008	NM_032444.2	662	aAg/aCg																																																																														
KDR	3791	MSKCC	GRCh37	4	55956122	55956123	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	ATCT			P-0044439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	153	359	0	ENST00000263923.4:c.3189_3192dup	p.Ala1065ArgfsTer16	p.A1065Rfs*16	ENST00000263923	NM_002253.2	1064	-/AGAT																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553590	106553604	+	inframe_deletion	In_Frame_Del	DEL	GCGGGAACAGCCGCC	GCGGGAACAGCCGCC	-			P-0044447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	90	385	0	ENST00000369096.4:c.1555_1569del	p.Ala519_Ala523del	p.A519_A523del	ENST00000369096	NM_001198.3	519	GCGGGAACAGCCGCC/-																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911816	32911816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	81	252	0	ENST00000380152.3:c.3324G>T	p.Lys1108Asn	p.K1108N	ENST00000380152		1108	aaG/aaT																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128018924	128018924	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0044464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	100	396	0	ENST00000285398.2:c.1946-2A>T		p.X649_splice	ENST00000285398	NM_000122.1	649																																																																															
BAP1	8314	MSKCC	GRCh37	3	52443868	52443884	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCAGCTCCAGCCAGC	CTCCAGCTCCAGCCAGC	-			P-0044464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	139	799	0	ENST00000460680.1:c.11_27del	p.Gly4GlufsTer59	p.G4Efs*59	ENST00000460680	NM_004656.3	4	gGCTGGCTGGAGCTGGAG/g																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0044477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	192	352	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0044477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	166	703	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130435	29130435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779269031		P-0044477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	209	711	0	ENST00000328354.6:c.275C>T	p.Pro92Leu	p.P92L	ENST00000328354	NM_007194.3	92	cCc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0044477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	77	218	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106730	27106730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773818181		P-0044477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	152	612	0	ENST00000324856.7:c.6341C>T	p.Pro2114Leu	p.P2114L	ENST00000324856	NM_006015.4	2114	cCg/cTg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372025	55372025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	62	451	2	ENST00000297316.4:c.715G>A	p.Ala239Thr	p.A239T	ENST00000297316	NM_022454.3	239	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0044499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	368	589	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323261	31323261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576012253		P-0044499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	68	343	0	ENST00000412585.2:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000412585	NM_005514.6	243	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432290	49432290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	251	842	1	ENST00000301067.7:c.8849C>T	p.Pro2950Leu	p.P2950L	ENST00000301067	NM_003482.3	2950	cCc/cTc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332645	70332645	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	66	525	0	ENST00000373644.4:c.550A>T	p.Lys184Ter	p.K184*	ENST00000373644	NM_030625.2	184	Aag/Tag																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195318	102195318	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs375640711		P-0044499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	267	335	0	ENST00000263464.3:c.78G>T	p.Leu26Phe	p.L26F	ENST00000263464	NM_001165.4	26	ttG/ttT																																																																														
PARK2	0	MSKCC	GRCh37	6	161771148	161771148	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1305965991		P-0044499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	97	611	0	ENST00000366898.1:c.1381C>T	p.His461Tyr	p.H461Y	ENST00000366898	NM_004562.2	461	Cac/Tac																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006243	22006243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	143	575	0	ENST00000276925.6:c.160A>G	p.Met54Val	p.M54V	ENST00000276925	NM_004936.3	54	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	140	355	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882019		P-0044512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	200	866	0	ENST00000269305.4:c.455dup	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216504	36216504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	68	848	1	ENST00000222270.7:c.3767G>T	p.Gly1256Val	p.G1256V	ENST00000222270	NM_014727.1	1256	gGa/gTa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464917	120464917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	236	356	0	ENST00000256646.2:c.5155C>T	p.Arg1719Ter	p.R1719*	ENST00000256646	NM_024408.3	1719	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0044555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	189	429	0	ENST00000269305.4:c.991del	p.Gln331ArgfsTer14	p.Q331Rfs*14	ENST00000269305	NM_001126112.2	331	Cag/ag																																																																														
MALT1	10892	MSKCC	GRCh37	18	56414998	56414998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	22	381	0	ENST00000348428.3:c.2399G>A	p.Arg800Lys	p.R800K	ENST00000348428	NM_006785.3	800	aGa/aAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268044	55268044	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs17337451		P-0044555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	45	484	0	ENST00000275493.2:c.2884C>G	p.Arg962Gly	p.R962G	ENST00000275493	NM_005228.3	962	Cgt/Ggt																																																																														
NBN	4683	MSKCC	GRCh37	8	90955489	90955489	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	107	295	0	ENST00000265433.3:c.2176G>C	p.Glu726Gln	p.E726Q	ENST00000265433	NM_002485.4	726	Gaa/Caa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923655	39923655	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	671	494	0	ENST00000378444.4:c.3436G>T	p.Glu1146Ter	p.E1146*	ENST00000378444	NM_001123385.1	1146	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	34	565	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	14	243	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	231	389	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0044580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	94	856	2	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913485		P-0044580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	3556	822	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231497	5231497	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200771602		P-0044580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	104	750	1	ENST00000357368.4:c.1979C>T	p.Pro660Leu	p.P660L	ENST00000357368	NM_002850.3	660	cCg/cTg																																																																														
ATM	472	MSKCC	GRCh37	11	108190691	108190691	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	172	464	0	ENST00000278616.4:c.6358G>T	p.Glu2120Ter	p.E2120*	ENST00000278616	NM_000051.3	2120	Gaa/Taa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26971318	26971318	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	94	358	0	ENST00000381527.3:c.889A>G	p.Met297Val	p.M297V	ENST00000381527	NM_001260.1	297	Atg/Gtg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30323833	30323833	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	257	313	0	ENST00000322652.5:c.1811C>A	p.Ser604Tyr	p.S604Y	ENST00000322652	NM_015355.2	604	tCt/tAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131930727	131930727	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	192	390	0	ENST00000265335.6:c.1960A>G	p.Lys654Glu	p.K654E	ENST00000265335		654	Aaa/Gaa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135782190	135782193	+	frameshift_variant	Frame_Shift_Del	DEL	GAGT	GAGT	-			P-0044580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	177	532	0	ENST00000298552.3:c.1363_1366del	p.Thr455Ter	p.T455*	ENST00000298552	NM_001162426.1	455	ACTCta/ta																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289112	33289112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	70	606	0	ENST00000374542.5:c.440del	p.Pro147LeufsTer82	p.P147Lfs*82	ENST00000374542	NM_001141970.1	147	cCt/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	138	384	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	177	357	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	322	711	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440713	56440713	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	247	555	0	ENST00000407977.2:c.505G>C	p.Ala169Pro	p.A169P	ENST00000407977		169	Gct/Cct																																																																														
ATR	545	MSKCC	GRCh37	3	142172076	142172076	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	26	302	0	ENST00000350721.4:c.7656-1G>A		p.X2552_splice	ENST00000350721	NM_001184.3	2552																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0044850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	93	365	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0044850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	64	468	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690805	89690805	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0044850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	30	293	2	ENST00000371953.3:c.212G>T	p.Cys71Phe	p.C71F	ENST00000371953	NM_000314.4	71	tGt/tTt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371799	55371820	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCGCGCTGGGCCCCGAG	GGCGGCCGCGCTGGGCCCCGAG	-			P-0044850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	107	223	0	ENST00000297316.4:c.499_520del	p.Leu167TrpfsTer213	p.L167Wfs*213	ENST00000297316	NM_022454.3	163	caGGCGGCCGCGCTGGGCCCCGAG/ca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720682	89720728	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTAGAAAATGGA	TCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTAGAAAATGGA	-			P-0044850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	25	280	0	ENST00000371953.3:c.833_879del	p.Phe278Ter	p.F278*	ENST00000371953	NM_000314.4	278	tTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTAGAAAATGGA/t																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591053	67591054	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAAGAAGCA			P-0044850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	38	247	0	ENST00000274335.5:c.1648_1656dup	p.Lys550_Gln552dup	p.K550_Q552dup	ENST00000274335		550	ttg/ttGAAGAAGCAg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593379	67593380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0044850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	75	318	0	ENST00000274335.5:c.2127_2128dup	p.Leu710ProfsTer6	p.L710Pfs*6	ENST00000274335		709	tcc/tCCcc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	44	326	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	80	368	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	39	219	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	82	565	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355266	15355266	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770044101		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	54	274	0	ENST00000263377.2:c.2357C>T	p.Pro786Leu	p.P786L	ENST00000263377	NM_058243.2	786	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	52	300	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	33	156	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780068		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	118	578	0	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226294	2226294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	84	621	0	ENST00000326181.6:c.1907C>T	p.Thr636Met	p.T636M	ENST00000326181	NM_032271.2	636	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112154721	112154721	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745918184		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	43	306	0	ENST00000257430.4:c.992C>T	p.Ser331Leu	p.S331L	ENST00000257430	NM_000038.5	331	tCg/tTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	117	315	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265323	152265323	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866869178		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	35	245	0	ENST00000206249.3:c.776G>A	p.Arg259Gln	p.R259Q	ENST00000206249	NM_000125.3	259	cGa/cAa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979986	7979987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs746723399		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	100	579	0	ENST00000319144.4:c.1350dup	p.Leu451AlafsTer27	p.L451Afs*27	ENST00000319144	NM_001139.2	450	-/G																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	49	334	3	ENST00000289153.2:c.1810del	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																														
NUF2	83540	MSKCC	GRCh37	1	163307846	163307846	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61747498		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	30	278	0	ENST00000271452.3:c.472G>A	p.Ala158Thr	p.A158T	ENST00000271452	NM_145697.2	158	Gca/Aca																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	101	339	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	135	389	3	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625303	69625303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	132	629	0	ENST00000334134.2:c.490C>T	p.Arg164Cys	p.R164C	ENST00000334134	NM_005247.2	164	Cgc/Tgc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115272956	115272956	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1178464540		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	77	481	0	ENST00000438362.2:c.1417C>T	p.Arg473Cys	p.R473C	ENST00000438362	NM_001242891.1	473	Cgt/Tgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	26	257	1	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793363	242793363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	101	640	0	ENST00000334409.5:c.714del	p.Val239CysfsTer39	p.V239Cfs*39	ENST00000334409	NM_005018.2	238	ccC/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223614	36223614	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	99	675	1	ENST00000222270.7:c.6169del	p.Arg2057AlafsTer34	p.R2057Afs*34	ENST00000222270	NM_014727.1	2055	gCc/gc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89352576	89352576	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762710349		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	86	350	0	ENST00000301030.4:c.763C>T	p.Arg255Trp	p.R255W	ENST00000301030	NM_001256183.1	255	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431178	49431178	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs793888512		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	87	600	1	ENST00000301067.7:c.9961C>T	p.Arg3321Ter	p.R3321*	ENST00000301067	NM_003482.3	3321	Cga/Tga																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182662920	182662920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	39	308	0	ENST00000292782.4:c.742C>T	p.Arg248Cys	p.R248C	ENST00000292782	NM_020640.2	248	Cgc/Tgc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277992	41277992	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	40	269	0	ENST00000349496.5:c.1954+2T>C		p.X652_splice	ENST00000349496	NM_001904.3	652																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877423	28877423	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750346448		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	73	407	0	ENST00000282397.4:c.3898G>A	p.Val1300Ile	p.V1300I	ENST00000282397	NM_002019.4	1300	Gtc/Atc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752799	57752800	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	38	198	0	ENST00000274289.3:c.1128dup	p.Asp377ArgfsTer7	p.D377Rfs*7	ENST00000274289	NM_006622.3	376	-/A																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843553	3843553	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	62	369	0	ENST00000262367.5:c.1050del	p.Lys350AsnfsTer4	p.K350Nfs*4	ENST00000262367	NM_004380.2	350	aaA/aa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100793	8100793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	65	541	1	ENST00000346208.3:c.767G>A	p.Arg256Gln	p.R256Q	ENST00000346208		256	cGg/cAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375668	118375668	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	52	314	0	ENST00000534358.1:c.9061A>C	p.Asn3021His	p.N3021H	ENST00000534358	NM_005933.3	3021	Aac/Cac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376499	118376499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	35	282	0	ENST00000534358.1:c.9892T>C	p.Tyr3298His	p.Y3298H	ENST00000534358	NM_005933.3	3298	Tat/Cat																																																																														
POLE	5426	MSKCC	GRCh37	12	133257248	133257248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774404704		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	59	348	0	ENST00000320574.5:c.230G>A	p.Arg77His	p.R77H	ENST00000320574	NM_006231.2	77	cGc/cAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858692	9858693	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	39	337	0	ENST00000330684.3:c.2708dup	p.Asn903LysfsTer21	p.N903Kfs*21	ENST00000330684	NM_001134407.1	903	aac/aaAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831731	72831731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	83	388	0	ENST00000268489.5:c.4850C>A	p.Ser1617Tyr	p.S1617Y	ENST00000268489	NM_006885.3	1617	tCt/tAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89337251	89337251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	63	356	0	ENST00000301030.4:c.7780G>A	p.Val2594Met	p.V2594M	ENST00000301030	NM_001256183.1	2594	Gtg/Atg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58677786	58677786	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	53	452	0	ENST00000305921.3:c.11T>C	p.Leu4Pro	p.L4P	ENST00000305921	NM_003620.3	4	cTg/cCg																																																																														
AKT2	208	MSKCC	GRCh37	19	40741860	40741860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778561687		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	78	464	2	ENST00000392038.2:c.1112G>A	p.Arg371His	p.R371H	ENST00000392038	NM_001626.4	371	cGc/cAc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484417	57484417	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	57	328	0	ENST00000371085.3:c.598T>C	p.Cys200Arg	p.C200R	ENST00000371085	NM_000516.4	200	Tgc/Cgc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626047	12626047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881007		P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	67	340	0	ENST00000251849.4:c.1913C>T	p.Thr638Met	p.T638M	ENST00000251849	NM_002880.3	638	aCg/aTg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067316	37067316	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	60	339	0	ENST00000231790.2:c.1228del	p.Ala410ProfsTer81	p.A410Pfs*81	ENST00000231790	NM_000249.3	409	caG/ca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163746	47163746	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	47	334	0	ENST00000409792.3:c.2380T>C	p.Tyr794His	p.Y794H	ENST00000409792	NM_014159.6	794	Tac/Cac																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38947373	38947373	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	18	121	0	ENST00000357387.3:c.4307T>C	p.Ile1436Thr	p.I1436T	ENST00000357387	NM_152756.3	1436	aTa/aCa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718159	117718159	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	49	356	0	ENST00000368508.3:c.698T>C	p.Ile233Thr	p.I233T	ENST00000368508	NM_002944.2	233	aTc/aCc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864366	151864366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	58	294	0	ENST00000262189.6:c.9615C>G	p.His3205Gln	p.H3205Q	ENST00000262189	NM_170606.2	3205	caC/caG																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231343	98231343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	90	547	0	ENST00000331920.6:c.1940G>C	p.Ser647Thr	p.S647T	ENST00000331920	NM_000264.3	647	aGc/aCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	605	619	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0044881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	60	267	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0044881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	142	428	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1422891742		P-0044881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	153	456	2	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677912	117677912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	166	371	0	ENST00000368508.3:c.4021G>C	p.Ala1341Pro	p.A1341P	ENST00000368508	NM_002944.2	1341	Gct/Cct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	98	342	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0044934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	206	520	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212149	5212149	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1377011238		P-0044934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	137	680	0	ENST00000357368.4:c.4882C>T	p.Arg1628Cys	p.R1628C	ENST00000357368	NM_002850.3	1628	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106364	27106364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	117	473	1	ENST00000324856.7:c.5975C>T	p.Ser1992Leu	p.S1992L	ENST00000324856	NM_006015.4	1992	tCa/tTa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164664	36164665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	112	665	0	ENST00000300305.3:c.1210dup	p.His404ProfsTer196	p.H404Pfs*196	ENST00000300305		404	cac/cCac																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488226	56488226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	122	477	0	ENST00000267101.3:c.1745G>A	p.Gly582Glu	p.G582E	ENST00000267101	NM_001982.3	582	gGg/gAg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138583	2138583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778484981		P-0044934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	69	559	2	ENST00000219476.3:c.5396C>T	p.Ser1799Leu	p.S1799L	ENST00000219476	NM_000548.3	1799	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057520007		P-0044968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	49	635	0	ENST00000269305.4:c.614A>C	p.Tyr205Ser	p.Y205S	ENST00000269305	NM_001126112.2	205	tAt/tCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057641	27057641	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0044968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	50	429	0	ENST00000324856.7:c.1351-2A>G		p.X451_splice	ENST00000324856	NM_006015.4	451																																																																															
BLM	641	MSKCC	GRCh37	15	91346849	91346849	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1416261851		P-0044968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	37	381	0	ENST00000355112.3:c.3458del	p.Lys1153ArgfsTer19	p.K1153Rfs*19	ENST00000355112	NM_000057.2	1153	Aag/ag																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0044989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	42	180	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579336	7579336	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	417	606	0	ENST00000269305.4:c.351del	p.Thr118GlnfsTer5	p.T118Qfs*5	ENST00000269305	NM_001126112.2	117	ggG/gg																																																																														
TEK	7010	MSKCC	GRCh37	9	27202926	27202926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772637203		P-0044989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	117	298	0	ENST00000380036.4:c.2018G>A	p.Arg673His	p.R673H	ENST00000380036	NM_000459.3	673	cGt/cAt																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29107979	29107979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	89	259	0	ENST00000328354.6:c.710C>G	p.Ala237Gly	p.A237G	ENST00000328354	NM_007194.3	237	gCt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112163683	112163683	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	114	130	0	ENST00000257430.4:c.1606G>T	p.Glu536Ter	p.E536*	ENST00000257430	NM_000038.5	536	Gaa/Taa																																																																														
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0047316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	919	429	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181812	56181812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs937257820		P-0047316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	35	489	0	ENST00000399503.3:c.4036G>A	p.Val1346Ile	p.V1346I	ENST00000399503	NM_005921.1	1346	Gtt/Att																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	223	951	2	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	121	767	0	ENST00000342988.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000342988	NM_005359.5	352	gGa/gTa																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428327	33428327	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781813		P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	173	717	0	ENST00000335858.7:c.460C>T	p.Arg154Cys	p.R154C	ENST00000335858	NM_133629.2	154	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112151191	112151191	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	65	495	0	ENST00000257430.4:c.835-1G>A		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72827429	72827429	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	147	843	0	ENST00000268489.5:c.9152A>C	p.Lys3051Thr	p.K3051T	ENST00000268489	NM_006885.3	3051	aAa/aCa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52662914	52662914	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1348721028		P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	251	550	0	ENST00000394830.3:c.1439T>C	p.Met480Thr	p.M480T	ENST00000394830	NM_018313.4	480	aTg/aCg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026096	71026096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	75	474	0	ENST00000318789.4:c.1526G>C	p.Trp509Ser	p.W509S	ENST00000318789	NM_032682.5	509	tGg/tCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540508	187540508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	116	614	0	ENST00000441802.2:c.7232G>T	p.Cys2411Phe	p.C2411F	ENST00000441802	NM_005245.3	2411	tGt/tTt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741671	145741671	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749625708		P-0048606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	845	1002	2	ENST00000428558.2:c.832G>A	p.Glu278Lys	p.E278K	ENST00000428558	NM_004260.3	278	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112157613	112157613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	57	563	0	ENST00000257430.4:c.1333C>T	p.Gln445Ter	p.Q445*	ENST00000257430	NM_000038.5	445	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112176027	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0048723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	54	336	0	ENST00000257430.4:c.4738_4741del	p.Ile1580LeufsTer69	p.I1580Lfs*69	ENST00000257430	NM_000038.5	1579	aTTATt/at																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2491282	2491282	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1357340259		P-0048723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	172	831	2	ENST00000355716.4:c.325C>T	p.Arg109Trp	p.R109W	ENST00000355716	NM_003820.2	109	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577021	7577022	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTTA			P-0048723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	311	673	0	ENST00000269305.4:c.912_916dup	p.Arg306LeufsTer41	p.R306Lfs*41	ENST00000269305	NM_001126112.2	306	cga/cTAAGCga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25964948	25964948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	104	535	1	ENST00000435504.4:c.4258G>T	p.Asp1420Tyr	p.D1420Y	ENST00000435504		1420	Gat/Tat																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592163	67592164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTAG			P-0049082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	21	194	0	ENST00000274335.5:c.1984_1985+3dup		p.S660fs	ENST00000274335		660	tct/tcTGTAGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163434	47163435	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0049082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	30	283	0	ENST00000409792.3:c.2691_2692del	p.Leu898GlufsTer17	p.L898Efs*17	ENST00000409792	NM_014159.6	897	ctCTtg/cttg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597509	52597519	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTGAAAAAAG	TCTGAAAAAAG	-			P-0049082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	25	249	0	ENST00000394830.3:c.3801-10_3801del		p.X1267_splice	ENST00000394830	NM_018313.4	1267																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53254035	53254035	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	82	304	0	ENST00000375401.3:c.37G>T	p.Glu13Ter	p.E13*	ENST00000375401	NM_004187.3	13	Gag/Tag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000066-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			325	18	439	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																														
RARA	5914	MSKCC	GRCh37	17	38510606	38510606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000066-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1172	270	579	2	ENST00000254066.5:c.860C>T	p.Ser287Leu	p.S287L	ENST00000254066	NM_000964.3	287	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864343	151864343	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000066-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			517	111	546	0	ENST00000262189.6:c.9638C>G	p.Ser3213Ter	p.S3213*	ENST00000262189	NM_170606.2	3213	tCa/tGa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349880	15349880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000066-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			302	101	228	0	ENST00000263377.2:c.3772G>A	p.Glu1258Lys	p.E1258K	ENST00000263377	NM_058243.2	1258	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	123	119	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266709	198266709	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			918	343	351	0	ENST00000335508.6:c.2223G>C	p.Lys741Asn	p.K741N	ENST00000335508	NM_012433.2	741	aaG/aaC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878676	151878676	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	168	206	0	ENST00000262189.6:c.6269C>G	p.Ser2090Ter	p.S2090*	ENST00000262189	NM_170606.2	2090	tCa/tGa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38273402	38273402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1098	93	392	0	ENST00000425967.3:c.1933C>G	p.Leu645Val	p.L645V	ENST00000425967	NM_001174067.1	645	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	341	437	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244280	5244280	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	269	456	0	ENST00000357368.4:c.1202G>A	p.Trp401Ter	p.W401*	ENST00000357368	NM_002850.3	401	tGg/tAg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794044	42794044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000606-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			776	290	312	0	ENST00000575354.2:c.1405G>C	p.Glu469Gln	p.E469Q	ENST00000575354	NM_015125.3	469	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001396-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			422	109	405	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001396-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			281	455	773	0	ENST00000269305.4:c.757A>C	p.Thr253Pro	p.T253P	ENST00000269305	NM_001126112.2	253	Acc/Ccc																																																																														
NF1	4763	MSKCC	GRCh37	17	29687586	29687586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001396-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	153	629	1	ENST00000358273.4:c.8242G>A	p.Glu2748Lys	p.E2748K	ENST00000358273	NM_001042492.2	2748	Gaa/Aaa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691950	30691950	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0001396-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			237	89	401	0	ENST00000359013.4:c.528del	p.Glu177AsnfsTer11	p.E177Nfs*11	ENST00000359013	NM_001024847.2	176	gAa/ga																																																																														
STAT3	6774	MSKCC	GRCh37	17	40478169	40478169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1288968449		P-0001396-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			710	196	659	0	ENST00000264657.5:c.1330G>A	p.Glu444Lys	p.E444K	ENST00000264657	NM_139276.2	444	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436042	49436042	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1164333482		P-0001396-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			579	203	716	0	ENST00000301067.7:c.5939C>T	p.Thr1980Met	p.T1980M	ENST00000301067	NM_003482.3	1980	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0001817-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1426	2477	426	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0001817-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			834	165	452	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0001817-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	1762	385	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166184	118166184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371434677		P-0001817-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			910	80	307	1	ENST00000369448.3:c.694G>A	p.Ala232Thr	p.A232T	ENST00000369448	NM_017709.3	232	Gcc/Acc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675502	30675502	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001817-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1371	146	587	2	ENST00000376406.3:c.2854G>C	p.Glu952Gln	p.E952Q	ENST00000376406	NM_014641.2	952	Gag/Cag																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112915792	112915792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001817-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			878	67	325	0	ENST00000351677.2:c.1065G>A	p.Met355Ile	p.M355I	ENST00000351677	NM_002834.3	355	atG/atA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781200	3781200	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001817-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			845	76	279	0	ENST00000262367.5:c.5165T>A	p.Val1722Glu	p.V1722E	ENST00000262367	NM_004380.2	1722	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519931		P-0004841-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	87	426	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs876659675		P-0004841-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			838	273	654	0	ENST00000269305.4:c.764T>G	p.Ile255Ser	p.I255S	ENST00000269305	NM_001126112.2	255	aTc/aGc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87325634	87325634	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004841-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	65	435	0	ENST00000277120.3:c.511A>C	p.Thr171Pro	p.T171P	ENST00000277120		171	Act/Cct																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0006795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	129	717	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215386	5215386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	51	1059	2	ENST00000357368.4:c.4232C>T	p.Ser1411Phe	p.S1411F	ENST00000357368	NM_002850.3	1411	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578219	7578220	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	147	1182	0	ENST00000269305.4:c.629dup	p.Asn210LysfsTer6	p.N210Kfs*6	ENST00000269305	NM_001126112.2	210	aac/aaAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	49	384	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0010640-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			980	293	643	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0010640-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	283	739	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242486	+	inframe_deletion	In_Frame_Del	DEL	TTAAGAGAAGCAACATCT	TTAAGAGAAGCAACATCT	-	rs121913440		P-0010640-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			853	275	575	0	ENST00000275493.2:c.2239_2256del	p.Leu747_Ser752del	p.L747_S752del	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCT/-																																																																														
YAP1	10413	MSKCC	GRCh37	11	101984952	101984952	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1384754271		P-0010640-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	137	330	0	ENST00000282441.5:c.399G>T	p.Gln133His	p.Q133H	ENST00000282441	NM_001130145.2	133	caG/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	319	321	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	479	530	2	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs797045586		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	359	308	0	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913302		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	299	252	0	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																														
BCL6	604	MSKCC	GRCh37	3	187451406	187451406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779268890		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	418	409	4	ENST00000232014.4:c.76C>T	p.Arg26Trp	p.R26W	ENST00000232014	NM_001130845.1	26	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76940000	76940000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	567	520	1	ENST00000373344.5:c.748C>T	p.Arg250Ter	p.R250*	ENST00000373344	NM_000489.3	250	Cga/Tga																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987067	36987067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	134	336	0	ENST00000354822.5:c.622C>T	p.Arg208Ter	p.R208*	ENST00000354822	NM_001079668.2	208	Cga/Tga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89335023	89335023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	151	153	0	ENST00000301030.4:c.7855G>A	p.Val2619Met	p.V2619M	ENST00000301030	NM_001256183.1	2619	Gtg/Atg																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45796880	45796880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1441591597		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	153	335	0	ENST00000372115.3:c.1408G>A	p.Ala470Thr	p.A470T	ENST00000372115	NM_001048171.1	470	Gca/Aca																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054978	176054978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	471	482	0	ENST00000367669.3:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000367669	NM_022457.5	359	Cga/Tga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643617	52643617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199976998		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	343	321	0	ENST00000394830.3:c.2279G>A	p.Arg760His	p.R760H	ENST00000394830	NM_018313.4	760	cGc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518087	187518087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767899323		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	247	561	2	ENST00000441802.2:c.12607C>T	p.Arg4203Cys	p.R4203C	ENST00000441802	NM_005245.3	4203	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549395	187549395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768661863		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	296	525	0	ENST00000441802.2:c.4723G>A	p.Ala1575Thr	p.A1575T	ENST00000441802	NM_005245.3	1575	Gca/Aca																																																																														
TERT	7015	MSKCC	GRCh37	5	1293754	1293754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	114	509	0	ENST00000310581.5:c.1247G>A	p.Arg416Gln	p.R416Q	ENST00000310581	NM_198253.2	416	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659299	86659299	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771416114		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	186	392	0	ENST00000274376.6:c.1588G>A	p.Val530Ile	p.V530I	ENST00000274376	NM_002890.2	530	Gtt/Att																																																																														
APC	324	MSKCC	GRCh37	5	112164604	112164604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	317	210	0	ENST00000257430.4:c.1678A>G	p.Lys560Glu	p.K560E	ENST00000257430	NM_000038.5	560	Aaa/Gaa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481461	20481461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	322	295	0	ENST00000346618.3:c.530C>T	p.Thr177Met	p.T177M	ENST00000346618	NM_001949.4	177	aCg/aTg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912306	29912306	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761593088		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	242	432	0	ENST00000376809.5:c.925G>A	p.Val309Met	p.V309M	ENST00000376809	NM_002116.7	309	Gtg/Atg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987215	2987215	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	259	322	0	ENST00000396946.4:c.214C>T	p.Arg72Ter	p.R72*	ENST00000396946	NM_032415.4	72	Cga/Tga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98238417	98238417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137903539		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	323	369	0	ENST00000331920.6:c.1627C>T	p.Arg543Cys	p.R543C	ENST00000331920	NM_000264.3	543	Cgc/Tgc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760865	133760865	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	206	545	0	ENST00000318560.5:c.3188T>A	p.Leu1063His	p.L1063H	ENST00000318560	NM_005157.4	1063	cTc/cAc																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61213503	61213503	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768954974		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	171	302	0	ENST00000301761.2:c.461G>A	p.Arg154His	p.R154H	ENST00000301761	NM_017841.2	154	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427360	49427360	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757243984		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	258	394	1	ENST00000301067.7:c.11128G>A	p.Gly3710Arg	p.G3710R	ENST00000301067	NM_003482.3	3710	Gga/Aga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88671959	88671959	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767919095		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	424	284	0	ENST00000360948.2:c.1211C>T	p.Thr404Met	p.T404M	ENST00000360948	NM_001012338.2	404	aCg/aTg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343506	343506	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141807086		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	415	537	1	ENST00000262320.3:c.2168G>A	p.Arg723Gln	p.R723Q	ENST00000262320	NM_003502.3	723	cGa/cAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029441	16029441	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1237	297	482	0	ENST00000268712.3:c.1589A>T	p.Glu530Val	p.E530V	ENST00000268712	NM_006311.3	530	gAa/gTa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554707	63554707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776778201		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	144	253	1	ENST00000307078.5:c.32C>T	p.Pro11Leu	p.P11L	ENST00000307078	NM_004655.3	11	cCg/cTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119842	70119842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	470	472	1	ENST00000245479.2:c.844G>A	p.Val282Ile	p.V282I	ENST00000245479	NM_000346.3	282	Gtc/Atc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78931495	78931495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	210	468	0	ENST00000306801.3:c.3442C>T	p.Arg1148Trp	p.R1148W	ENST00000306801	NM_020761.2	1148	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52725413	52725413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	463	459	1	ENST00000322088.6:c.1580G>A	p.Arg527His	p.R527H	ENST00000322088	NM_014225.5	527	cGc/cAc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513268	44513268	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761081553		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	200	450	0	ENST00000291552.4:c.667G>A	p.Gly223Arg	p.G223R	ENST00000291552	NM_006758.2	223	Gga/Aga																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551951	150551952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs750805885		P-0011252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	163	424	0	ENST00000369026.2:c.55dup	p.Ala19GlyfsTer91	p.A19Gfs*91	ENST00000369026	NM_021960.4	19	gcc/gGcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	202	527	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0012900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	88	721	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7572929	7572929	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0012900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	588	1067	0	ENST00000269305.4:c.1180T>A	p.Ter394ArgextTer9	p.*394Rext*9	ENST00000269305	NM_001126112.2	394	Tga/Aga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692792	89692792	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs779530981		P-0013339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	43	370	1	ENST00000371953.3:c.276C>A	p.Asp92Glu	p.D92E	ENST00000371953	NM_000314.4	92	gaC/gaA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061102	38061132	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTTGCGGCTCTCAGGGCCGCCCTTGGCGC	TCCTTGCGGCTCTCAGGGCCGCCCTTGGCGC	-			P-0013339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	29	94	0	ENST00000250448.2:c.857_887del	p.Gly286AlafsTer25	p.G286Afs*25	ENST00000250448	NM_004496.3	286	gGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGAc/gc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830389	72830413	+	frameshift_variant	Frame_Shift_Del	DEL	GATGGCTGGTGTGGACGCCGGCTGA	GATGGCTGGTGTGGACGCCGGCTGA	-			P-0013339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	168	786	0	ENST00000268489.5:c.6168_6192del	p.Gln2057ProfsTer36	p.Q2057Pfs*36	ENST00000268489	NM_006885.3	2056	ccTCAGCCGGCGTCCACACCAGCCATC/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	238	316	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11210212	11210212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1403372273		P-0015598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	96	397	0	ENST00000361445.4:c.4541G>A	p.Arg1514Gln	p.R1514Q	ENST00000361445	NM_004958.3	1514	cGg/cAg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274851	38274851	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519898		P-0015598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	5937	376	0	ENST00000425967.3:c.1729A>G	p.Asn577Asp	p.N577D	ENST00000425967	NM_001174067.1	577	Aac/Gac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509822	187509822	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs770217697		P-0015598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	107	176	0	ENST00000441802.2:c.13691A>G	p.Tyr4564Cys	p.Y4564C	ENST00000441802	NM_005245.3	4564	tAt/tGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435297	56435297	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	40	577	2	ENST00000407977.2:c.1840C>A	p.Gln614Lys	p.Q614K	ENST00000407977		614	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	95	341	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	51	230	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372862828		P-0016864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	335	424	0	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	211	488	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0017272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	123	358	0				ENST00000310581	NM_198253.2																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18435619	18435619	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1164190418		P-0017272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	95	339	0	ENST00000266497.5:c.604G>A	p.Glu202Lys	p.E202K	ENST00000266497		202	Gaa/Aaa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36931969	36931969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	166	452	0	ENST00000361632.4:c.2500G>A	p.Gly834Arg	p.G834R	ENST00000361632		834	Ggg/Agg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423638	88423639	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0017272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	66	291	1	ENST00000360948.2:c.2196_2197delinsTT	p.Pro733Ser	p.P733S	ENST00000360948	NM_001012338.2	732	ctCCcc/ctTTcc																																																																														
INSR	3643	MSKCC	GRCh37	19	7267511	7267511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	167	443	0	ENST00000302850.5:c.497C>T	p.Ser166Phe	p.S166F	ENST00000302850	NM_000208.2	166	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537972	212537972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	175	382	0	ENST00000342788.4:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000342788	NM_005235.2	545	Gag/Aag																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961556	54961556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	156	346	1	ENST00000312783.6:c.76C>T	p.Leu26Phe	p.L26F	ENST00000312783	NM_198436.1	26	Ctc/Ttc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713924	30713924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	125	292	0	ENST00000359013.4:c.1324G>A	p.Gly442Arg	p.G442R	ENST00000359013	NM_001024847.2	442	Ggg/Agg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217305	123217306	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0017272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	211	509	0	ENST00000218089.9:c.2959_2960delinsTT	p.Pro987Leu	p.P987L	ENST00000218089	NM_001042749.1	987	CCg/TTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468393	89468393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	93	248	0	ENST00000336596.2:c.1927C>T	p.Pro643Ser	p.P643S	ENST00000336596	NM_005233.5	643	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	695	819	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	199	469	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	212	238	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	193	378	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782378	9782378	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200226248		P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	248	594	1	ENST00000377346.4:c.2311G>A	p.Gly771Ser	p.G771S	ENST00000377346	NM_005026.3	771	Ggc/Agc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528572	89528572	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762601076		P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	306	377	0	ENST00000336596.2:c.2872G>A	p.Val958Met	p.V958M	ENST00000336596	NM_005233.5	958	Gtg/Atg																																																																														
MITF	4286	MSKCC	GRCh37	3	70008432	70008432	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1195515853		P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	121	344	0	ENST00000352241.4:c.1022G>A	p.Arg341His	p.R341H	ENST00000352241	NM_198159.2	341	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099957	27099958	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	318	587	0	ENST00000324856.7:c.3837dup	p.Pro1280SerfsTer7	p.P1280Sfs*7	ENST00000324856	NM_006015.4	1279	tat/taTt																																																																														
MGA	23269	MSKCC	GRCh37	15	42035164	42035164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1345	455	1145	0	ENST00000219905.7:c.5006C>G	p.Pro1669Arg	p.P1669R	ENST00000219905	NM_001164273.1	1669	cCt/cGt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794891	242794891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	292	599	0	ENST00000334409.5:c.318C>A	p.Phe106Leu	p.F106L	ENST00000334409	NM_005018.2	106	ttC/ttA																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40444011	40444012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	199	684	0	ENST00000345506.4:c.308dup	p.Glu104GlyfsTer13	p.E104Gfs*13	ENST00000345506	NM_003152.3	103	ctg/cTtg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631269	117631269	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1158125322		P-0019577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	144	564	0	ENST00000368508.3:c.6409A>C	p.Ile2137Leu	p.I2137L	ENST00000368508	NM_002944.2	2137	Atc/Ctc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0020088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	205	686	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635167	87635167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	129	479	2	ENST00000277120.3:c.2219G>A	p.Ser740Asn	p.S740N	ENST00000277120		740	aGc/aAc																																																																														
CDC42	998	MSKCC	GRCh37	1	22405072	22405072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	56	384	0	ENST00000344548.3:c.101C>T	p.Pro34Leu	p.P34L	ENST00000344548	NM_001039802.1	34	cCg/cTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41265771	41266375	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACC	GCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACC	-			P-0020088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	78	43	0	ENST00000349496.5:c.13+199_242-70del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749442	41749442	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1476963248		P-0020088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	119	436	1	ENST00000226382.2:c.353C>T	p.Ala118Val	p.A118V	ENST00000226382	NM_003924.3	118	gCg/gTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589590	67589604	+	inframe_deletion	In_Frame_Del	DEL	ATATAACACTCAGTT	ATATAACACTCAGTT	-			P-0020088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	208	495	0	ENST00000274335.5:c.1353_1367del	p.Glu451_Phe456delinsAsp	p.E451_F456delinsD	ENST00000274335		451	gaATATAACACTCAGTTt/gat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467865	66467865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs939351025		P-0020106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	54	295	0	ENST00000273854.3:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000273854	NM_004439.5	135	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057947	27057948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	48	567	1	ENST00000324856.7:c.1656dup	p.Gln553ThrfsTer70	p.Q553Tfs*70	ENST00000324856	NM_006015.4	552	tca/tcAa																																																																														
CDH1	999	MSKCC	GRCh37	16	68857335	68857335	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	94	450	0	ENST00000261769.5:c.1971del	p.Leu658Ter	p.L658*	ENST00000261769	NM_004360.3	657	gCc/gc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097706	27097707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	123	563	0	ENST00000324856.7:c.3296dup	p.Cys1099TrpfsTer6	p.C1099Wfs*6	ENST00000324856	NM_006015.4	1099	tgt/tGgt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851321	156851321	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	104	1090	0	ENST00000524377.1:c.2278A>C	p.Met760Leu	p.M760L	ENST00000524377	NM_002529.3	760	Atg/Ctg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660409	227660409	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	34	704	0	ENST00000305123.5:c.3046C>G	p.Arg1016Gly	p.R1016G	ENST00000305123	NM_005544.2	1016	Cga/Gga																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0020972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	89	334	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735436	204735436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	58	492	1	ENST00000302823.3:c.237C>A	p.Ser79Arg	p.S79R	ENST00000302823	NM_005214.4	79	agC/agA																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138423323	138423323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747790462		P-0020972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	143	653	1	ENST00000289153.2:c.1543G>A	p.Ala515Thr	p.A515T	ENST00000289153	NM_006219.2	515	Gca/Aca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	767	513	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	468	946	0	ENST00000269571.5:c.2332_2340dup	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438143	56438143	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	296	1027	0	ENST00000407977.2:c.849+1G>T		p.X283_splice	ENST00000407977		283																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120484331	120484331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	53	509	0	ENST00000256646.2:c.2799C>G	p.Phe933Leu	p.F933L	ENST00000256646	NM_024408.3	933	ttC/ttG																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482806	67482806	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	226	790	0	ENST00000327367.4:c.1210T>G	p.Leu404Val	p.L404V	ENST00000327367	NM_005902.3	404	Ttg/Gtg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992390	72992390	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs754146286		P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	141	1143	0	ENST00000268489.5:c.1655C>G	p.Ser552Cys	p.S552C	ENST00000268489	NM_006885.3	552	tCt/tGt																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22153321	22153321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	71	750	1	ENST00000215832.6:c.589G>A	p.Glu197Lys	p.E197K	ENST00000215832	NM_002745.4	197	Gaa/Aaa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117377	115117378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0021792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	51	522	0	ENST00000257566.3:c.795_796dup	p.Ser266IlefsTer17	p.S266Ifs*17	ENST00000257566	NM_016569.3	266	agt/aTAgt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	10	138	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	138	849	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	32	636	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	70	525	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	41	451	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730831	40730831	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372700928		P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	199	1032	2	ENST00000373198.4:c.3704G>A	p.Arg1235His	p.R1235H	ENST00000373198	NM_133170.3	1235	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591955	48591972	+	inframe_deletion	In_Frame_Del	DEL	CAGAAGCCATTGAGAGAG	CAGAAGCCATTGAGAGAG	-			P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	23	529	2	ENST00000342988.3:c.1120_1137del	p.Glu374_Ala379del	p.E374_A379del	ENST00000342988	NM_005359.5	373	aCAGAAGCCATTGAGAGAGca/aca																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72881616	72881616	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	93	665	0	ENST00000325599.8:c.503T>G	p.Val168Gly	p.V168G	ENST00000325599	NM_018130.2	168	gTt/gGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	232	622	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0024150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	157	770	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	69	399	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	429	911	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0024150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	131	622	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40864888	40864888	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	45	710	0	ENST00000373198.4:c.2380T>C	p.Tyr794His	p.Y794H	ENST00000373198	NM_133170.3	794	Tat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	40	346	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	160	482	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	18	399	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120085	70120085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	24	32	1	ENST00000245479.2:c.1087C>T	p.Gln363Ter	p.Q363*	ENST00000245479	NM_000346.3	363	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112174262	112174262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs786202995		P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	51	346	0	ENST00000257430.4:c.2971G>T	p.Glu991Ter	p.E991*	ENST00000257430	NM_000038.5	991	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250906	153250906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	66	330	1	ENST00000281708.4:c.1154C>T	p.Thr385Ile	p.T385I	ENST00000281708	NM_033632.3	385	aCa/aTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332465	153332468	+	frameshift_variant	Frame_Shift_Del	DEL	TTTG	TTTG	-			P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	61	287	0	ENST00000281708.4:c.488_491del	p.Thr163LysfsTer5	p.T163Kfs*5	ENST00000281708	NM_033632.3	163	aCAAAa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112176027	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0024425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	66	310	0	ENST00000257430.4:c.4738_4741del	p.Ile1580LeufsTer69	p.I1580Lfs*69	ENST00000257430	NM_000038.5	1579	aTTATt/at																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0024478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	25	585	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	255	805	0	ENST00000269305.4:c.742del	p.Arg248GlyfsTer97	p.R248Gfs*97	ENST00000269305	NM_001126112.2	248	Cgg/gg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952211	17952211	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1420054751		P-0024831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	121	656	0	ENST00000458235.1:c.1129C>T	p.His377Tyr	p.H377Y	ENST00000458235	NM_000215.3	377	Cac/Tac																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793421	242793421	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	141	847	0	ENST00000334409.5:c.656T>G	p.Phe219Cys	p.F219C	ENST00000334409	NM_005018.2	219	tTc/tGc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662780	117662780	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	63	300	0	ENST00000368508.3:c.4685A>C	p.Gln1562Pro	p.Q1562P	ENST00000368508	NM_002944.2	1562	cAg/cCg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38279339	38279339	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	297	907	3	ENST00000425967.3:c.1150T>C	p.Ser384Pro	p.S384P	ENST00000425967	NM_001174067.1	384	Tct/Cct																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412460	63412460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	111	974	1	ENST00000330258.3:c.707G>T	p.Gly236Val	p.G236V	ENST00000330258	NM_152424.3	236	gGg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	95	311	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925358	114925358	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	64	543	0	ENST00000543371.1:c.1436G>C	p.Cys479Ser	p.C479S	ENST00000543371	NM_001198531.1	479	tGc/tCc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944765	71944765	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	312	679	2	ENST00000298229.2:c.2190del	p.Ser731ProfsTer27	p.S731Pfs*27	ENST00000298229	NM_001567.3	730	aCc/ac																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133923	41133923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	26	328	0	ENST00000379561.5:c.1705C>T	p.Pro569Ser	p.P569S	ENST00000379561	NM_002015.3	569	Ccc/Tcc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462667	40462667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	285	446	2	ENST00000345506.4:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000345506	NM_003152.3	789	Gcc/Acc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41219624	41219624	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs80358053		P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	297	458	1	ENST00000357654.3:c.5074+1G>A		p.X1692_splice	ENST00000357654	NM_007294.3	1692																																																																															
BRCA1	672	MSKCC	GRCh37	17	41223192	41223193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	81	585	0	ENST00000357654.3:c.4738dup	p.Ser1580PhefsTer2	p.S1580Ffs*2	ENST00000357654	NM_007294.3	1580	tct/tTct																																																																														
MET	4233	MSKCC	GRCh37	7	116418870	116418870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	168	399	0	ENST00000397752.3:c.3381G>T	p.Glu1127Asp	p.E1127D	ENST00000397752	NM_000245.2	1127	gaG/gaT																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121908585		P-0026918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	201	521	1	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0027130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	177	690	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0027130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	212	727	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467637	50467637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1262982300		P-0027130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	72	406	1	ENST00000331340.3:c.872C>T	p.Thr291Met	p.T291M	ENST00000331340	NM_006060.4	291	aCg/aTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245494	153245494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	184	547	1	ENST00000281708.4:c.1697G>T	p.Trp566Leu	p.W566L	ENST00000281708	NM_033632.3	566	tGg/tTg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037510	12037510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	121	307	0	ENST00000396373.4:c.1141G>A	p.Gly381Arg	p.G381R	ENST00000396373	NM_001987.4	381	Gga/Aga																																																																														
TCF3	6929	MSKCC	GRCh37	19	1611752	1611752	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1019768299		P-0027130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	66	780	0	ENST00000344749.5:c.1910C>T	p.Pro637Leu	p.P637L	ENST00000344749	NM_001136139.2	637	cCc/cTc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31521255	31521255	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	156	619	0	ENST00000344624.3:c.922A>G	p.Lys308Glu	p.K308E	ENST00000344624		308	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0028066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	177	635	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426812	121426812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377110124		P-0028066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	106	558	1	ENST00000257555.6:c.503G>A	p.Arg168His	p.R168H	ENST00000257555		168	cGc/cAc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546704	9546704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	32	254	0	ENST00000353224.5:c.1318G>T	p.Val440Phe	p.V440F	ENST00000353224	NM_177990.2	440	Gtc/Ttc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528635	89528635	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	60	267	0	ENST00000336596.2:c.2935G>C	p.Gly979Arg	p.G979R	ENST00000336596	NM_005233.5	979	Ggc/Cgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	251	622	1	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779172	135779172	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs118203631		P-0028079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	151	494	1	ENST00000298552.3:c.2074C>T	p.Arg692Ter	p.R692*	ENST00000298552	NM_001162426.1	692	Cga/Tga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440346	52440346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	152	592	1	ENST00000460680.1:c.706G>A	p.Asp236Asn	p.D236N	ENST00000460680	NM_004656.3	236	Gac/Aac																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52663032	52663032	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	85	239	1	ENST00000394830.3:c.1321G>T	p.Glu441Ter	p.E441*	ENST00000394830	NM_018313.4	441	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	281	681	1	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522568	106522568	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs754441790		P-0028328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	146	431	0	ENST00000359195.3:c.2545C>T	p.Arg849Ter	p.R849*	ENST00000359195	NM_002649.2	849	Cga/Tga																																																																														
GATA2	2624	MSKCC	GRCh37	3	128199867	128199867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	131	385	1	ENST00000341105.2:c.1438G>A	p.Gly480Ser	p.G480S	ENST00000341105	NM_032638.4	480	Ggc/Agc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625330	69625330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143483033		P-0028785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	41	616	1	ENST00000334134.2:c.463G>A	p.Val155Met	p.V155M	ENST00000334134	NM_005247.2	155	Gtg/Atg																																																																														
CDH1	999	MSKCC	GRCh37	16	68844181	68844181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	72	709	0	ENST00000261769.5:c.769G>A	p.Asp257Asn	p.D257N	ENST00000261769	NM_004360.3	257	Gac/Aac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139397639	139397639	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	354	693	0	ENST00000277541.6:c.5162T>G	p.Val1721Gly	p.V1721G	ENST00000277541	NM_017617.3	1721	gTg/gGg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390793	139390793	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	135	881	0	ENST00000277541.6:c.7398del	p.Ser2467ArgfsTer10	p.S2467Rfs*10	ENST00000277541	NM_017617.3	2466	acG/ac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390904	139390908	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGT	CAGGT	ACTG			P-0029293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	377	755	1	ENST00000277541.6:c.7283_7287delinsCAGT	p.His2428ProfsTer7	p.H2428Pfs*7	ENST00000277541	NM_017617.3	2428	cACCTG/cCAGT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923604	39923604	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	124	294	0	ENST00000378444.4:c.3487del	p.Arg1163AspfsTer13	p.R1163Dfs*13	ENST00000378444	NM_001123385.1	1163	Cga/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	51	486	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	127	501	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839699	27839699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	32	383	0	ENST00000328488.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000328488	NM_003533.2	132	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993912	72993912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1187392987		P-0030198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	72	469	1	ENST00000268489.5:c.133G>A	p.Glu45Lys	p.E45K	ENST00000268489	NM_006885.3	45	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121912651		P-0030380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	483	572	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																														
ATR	545	MSKCC	GRCh37	3	142285074	142285077	+	frameshift_variant	Frame_Shift_Del	DEL	AGTC	AGTC	-			P-0030380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	355	404	0	ENST00000350721.4:c.178_181del	p.Asp60LeufsTer6	p.D60Lfs*6	ENST00000350721	NM_001184.3	60	GACTct/ct																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271519	26271519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	138	294	0	ENST00000305910.3:c.94G>T	p.Ala32Ser	p.A32S	ENST00000305910	NM_003534.2	32	Gcc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	185	566	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126342	5126342	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746602942		P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	115	361	0	ENST00000381652.3:c.3187C>T	p.Arg1063Cys	p.R1063C	ENST00000381652	NM_004972.3	1063	Cgt/Tgt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852095	63852095	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	231	702	0	ENST00000279873.7:c.2873C>G	p.Ser958Ter	p.S958*	ENST00000279873	NM_032199.2	958	tCa/tGa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912525	32912525	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	637	521	1	ENST00000380152.3:c.4033del	p.Asp1345IlefsTer29	p.D1345Ifs*29	ENST00000380152		1345	Gat/at																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343642	343642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	379	890	2	ENST00000262320.3:c.2032C>A	p.Gln678Lys	p.Q678K	ENST00000262320	NM_003502.3	678	Cag/Aag																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14028066	14028066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	168	441	0	ENST00000311895.7:c.1120G>C	p.Val374Leu	p.V374L	ENST00000311895	NM_005236.2	374	Gtc/Ctc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753123	42753123	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	286	622	0	ENST00000222329.4:c.1141C>G	p.Pro381Ala	p.P381A	ENST00000222329	NM_006494.2	381	Ccg/Gcg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38996937	38996937	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	267	591	0	ENST00000357387.3:c.440T>G	p.Leu147Arg	p.L147R	ENST00000357387	NM_152756.3	147	cTt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	12	539	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876660254		P-0031582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	19	606	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45649954	45649954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186459476		P-0031582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	35	551	1	ENST00000407780.3:c.881C>T	p.Pro294Leu	p.P294L	ENST00000407780	NM_001283052.1	294	cCg/cTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925570	114925570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	228	654	0	ENST00000543371.1:c.1648C>G	p.Leu550Val	p.L550V	ENST00000543371	NM_001198531.1	550	Ctc/Gtc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661797	227661798	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	19	695	0	ENST00000305123.5:c.1657dup	p.Glu553GlyfsTer58	p.E553Gfs*58	ENST00000305123	NM_005544.2	553	gag/gGag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974768	21974788	+	protein_altering_variant	In_Frame_Del	DEL	GCGGCCGTGGCCAGCCAGTCA	GCGGCCGTGGCCAGCCAGTCA	CCG			P-0031582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	106	258	2	ENST00000304494.5:c.39_59delinsCGG	p.Asp14_Ala20delinsGly	p.D14_A20delinsG	ENST00000304494	NM_000077.4	13	gcTGACTGGCTGGCCACGGCCGCg/gcCGGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974768	21974788	+	protein_altering_variant	In_Frame_Del	DEL	GCGGCCGTGGCCAGCCAGTCA	GCGGCCGTGGCCAGCCAGTCA	CCG			P-0031582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	106	258	2	ENST00000304494.5:c.39_59delinsCGG	p.Asp14_Ala20delinsGly	p.D14_A20delinsG	ENST00000304494	NM_000077.4	13	gcTGACTGGCTGGCCACGGCCGCg/gcCGGg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0031811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	60	586	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0031811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	70	504	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774211426		P-0031811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	178	608	0	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385120	41385120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	94	787	1	ENST00000373198.4:c.841G>A	p.Ala281Thr	p.A281T	ENST00000373198	NM_133170.3	281	Gcg/Acg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470573	25470573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	216	611	0	ENST00000264709.3:c.901C>T	p.Arg301Trp	p.R301W	ENST00000264709	NM_175629.2	301	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	76	263	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658483		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	158	651	2	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	16	183	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276755	15276755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138265894		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	35	662	2	ENST00000263388.2:c.5510G>A	p.Arg1837His	p.R1837H	ENST00000263388	NM_000435.2	1837	cGt/cAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133226361	133226361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs745750549		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	44	685	0	ENST00000320574.5:c.3697C>T	p.Arg1233Ter	p.R1233*	ENST00000320574	NM_006231.2	1233	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212652833	212652833	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs370840578		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	68	394	0	ENST00000342788.4:c.473C>A	p.Ala158Glu	p.A158E	ENST00000342788	NM_005235.2	158	gCa/gAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs753855314		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	28	612	4	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89809344	89809344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs1250230818		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	17	333	0	ENST00000389301.3:c.3629T>C	p.Phe1210Ser	p.F1210S	ENST00000389301	NM_000135.2	1210	tTc/tCc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424178	49424178	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs886040960		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	37	339	1	ENST00000301067.7:c.13884del	p.Thr4629ProfsTer11	p.T4629Pfs*11	ENST00000301067	NM_003482.3	4628	ccC/cc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	48	358	0	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300076	137300076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373515948		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	179	686	0	ENST00000481739.1:c.361G>A	p.Ala121Thr	p.A121T	ENST00000481739	NM_002957.4	121	Gcc/Acc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609930	81609930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	62	297	0	ENST00000298171.2:c.1528T>C	p.Tyr510His	p.Y510H	ENST00000298171	NM_000369.2	510	Tat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056187	27056187	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1484601889		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	100	347	0	ENST00000324856.7:c.1183T>C	p.Tyr395His	p.Y395H	ENST00000324856	NM_006015.4	395	Tat/Cat																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246078875	246078875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	86	544	0	ENST00000388985.4:c.770A>G	p.Tyr257Cys	p.Y257C	ENST00000388985		257	tAc/tGc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94203663	94203663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	30	290	0	ENST00000323929.3:c.991G>T	p.Ala331Ser	p.A331S	ENST00000323929	NM_005591.3	331	Gcc/Tcc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94924582	94924582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	17	408	0	ENST00000536441.1:c.328T>C	p.Tyr110His	p.Y110H	ENST00000536441	NM_144665.3	110	Tat/Cat																																																																														
CBL	867	MSKCC	GRCh37	11	119144699	119144700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	18	427	0	ENST00000264033.4:c.717dup	p.Glu240Ter	p.E240*	ENST00000264033	NM_005188.3	238	gtt/gTtt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245976	46245976	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	10	278	0	ENST00000334344.6:c.4070T>C	p.Leu1357Pro	p.L1357P	ENST00000334344	NM_152641.2	1357	cTa/cCa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865583	57865584	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	80	706	0	ENST00000228682.2:c.3065dup	p.Pro1023SerfsTer13	p.P1023Sfs*13	ENST00000228682	NM_005269.2	1020	-/G																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953607	32953607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	114	342	0	ENST00000380152.3:c.8908T>C	p.Trp2970Arg	p.W2970R	ENST00000380152		2970	Tgg/Cgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48955457	48955457	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	247	355	0	ENST00000267163.4:c.1573del	p.Ala525ProfsTer7	p.A525Pfs*7	ENST00000267163	NM_000321.2	525	Gcc/cc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061793	38061793	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	91	629	0	ENST00000250448.2:c.196A>T	p.Met66Leu	p.M66L	ENST00000250448	NM_004496.3	66	Atg/Ttg																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2094791	2094791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	41	662	0	ENST00000219066.1:c.389A>G	p.Tyr130Cys	p.Y130C	ENST00000219066	NM_002528.5	130	tAc/tGc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3644477	3644477	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs760126773		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	204	618	0	ENST00000294008.3:c.2137C>T	p.Arg713Ter	p.R713*	ENST00000294008	NM_032444.2	713	Cga/Tga																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761163	59761163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	19	578	0	ENST00000259008.2:c.3244A>G	p.Thr1082Ala	p.T1082A	ENST00000259008	NM_032043.2	1082	Acc/Gcc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63553997	63553997	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs758769942		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	183	404	0	ENST00000307078.5:c.742G>T	p.Val248Phe	p.V248F	ENST00000307078	NM_004655.3	248	Gtt/Ttt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78931470	78931470	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	161	531	0	ENST00000306801.3:c.3417G>C	p.Met1139Ile	p.M1139I	ENST00000306801	NM_020761.2	1139	atG/atC																																																																														
MALT1	10892	MSKCC	GRCh37	18	56390415	56390415	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	22	360	0	ENST00000348428.3:c.1154A>G	p.Asp385Gly	p.D385G	ENST00000348428	NM_006785.3	385	gAt/gGt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621047	1621047	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	198	761	0	ENST00000344749.5:c.1015-2A>G		p.X339_splice	ENST00000344749	NM_001136139.2	339																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245973	5245973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	165	677	0	ENST00000357368.4:c.802G>A	p.Ala268Thr	p.A268T	ENST00000357368	NM_002850.3	268	Gcc/Acc																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140124	50140124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1311348311		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	80	577	0	ENST00000246792.3:c.301G>A	p.Gly101Ser	p.G101S	ENST00000246792	NM_006270.3	101	Ggc/Agc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158595001	158595001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	43	391	0	ENST00000263640.3:c.1346G>A	p.Cys449Tyr	p.C449Y	ENST00000263640	NM_001105.4	449	tGt/tAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198272769	198272769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	15	593	0	ENST00000335508.6:c.1192C>A	p.Pro398Thr	p.P398T	ENST00000335508	NM_012433.2	398	Cca/Aca																																																																														
BARD1	580	MSKCC	GRCh37	2	215645646	215645646	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs565582076		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	70	521	1	ENST00000260947.4:c.952A>G	p.Asn318Asp	p.N318D	ENST00000260947	NM_000465.2	318	Aat/Gat																																																																														
CUL3	8452	MSKCC	GRCh37	2	225370686	225370686	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	11	309	0	ENST00000264414.4:c.1193A>G	p.Lys398Arg	p.K398R	ENST00000264414	NM_003590.4	398	aAg/aGg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561200	9561200	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	79	406	0	ENST00000353224.5:c.582A>T	p.Arg194Ser	p.R194S	ENST00000353224	NM_177990.2	194	agA/agT																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121020	29121020	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	220	669	0	ENST00000328354.6:c.537A>T	p.Lys179Asn	p.K179N	ENST00000328354	NM_007194.3	179	aaA/aaT																																																																														
EP300	2033	MSKCC	GRCh37	22	41513422	41513422	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	22	502	0	ENST00000263253.7:c.326A>G	p.Gln109Arg	p.Q109R	ENST00000263253	NM_001429.3	109	cAa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1254605	1254605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	119	436	0	ENST00000310581.5:c.3173C>G	p.Ala1058Gly	p.A1058G	ENST00000310581	NM_198253.2	1058	gCc/gGc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659203	86659203	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	16	170	1	ENST00000274376.6:c.1492G>T	p.Glu498Ter	p.E498*	ENST00000274376	NM_002890.2	498	Gag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157525012	157525012	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1022849043		P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	30	337	1	ENST00000346085.5:c.4907C>T	p.Ala1636Val	p.A1636V	ENST00000346085	NM_020732.3	1636	gCg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151841814	151841814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	19	295	0	ENST00000262189.6:c.14327C>T	p.Ala4776Val	p.A4776V	ENST00000262189	NM_170606.2	4776	gCa/gTa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205098	38205098	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	23	591	0	ENST00000317025.8:c.592A>G	p.Lys198Glu	p.K198E	ENST00000317025	NM_023034.1	198	Aaa/Gaa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069166	5069166	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	102	390	0	ENST00000381652.3:c.1471A>T	p.Ile491Leu	p.I491L	ENST00000381652	NM_004972.3	491	Ata/Tta																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139407551	139407551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	111	677	0	ENST00000277541.6:c.2389T>C	p.Ser797Pro	p.S797P	ENST00000277541	NM_017617.3	797	Tcc/Ccc																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139563015	139563015	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	56	633	0	ENST00000308874.7:c.87G>T	p.Arg29Ser	p.R29S	ENST00000308874		29	agG/agT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931625	39931625	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	21	235	0	ENST00000378444.4:c.2974A>G	p.Ser992Gly	p.S992G	ENST00000378444	NM_001123385.1	992	Agc/Ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934573		P-0032335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	269	491	1	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48937034	48937035	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	167	269	0	ENST00000267163.4:c.806dup	p.Asn269LysfsTer2	p.N269Kfs*2	ENST00000267163	NM_000321.2	268	gaa/gAaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	176	332	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCGGGTGAGAGTGGCG	GGGTCGGGTGAGAGTGGCG	-	rs730881674		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	34	364	0	ENST00000304494.5:c.225_243del	p.Ala76CysfsTer64	p.A76Cfs*64	ENST00000304494	NM_000077.4	75	ccCGCCACTCTCACCCGACCC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCGGGTGAGAGTGGCG	GGGTCGGGTGAGAGTGGCG	-	rs730881674		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	34	364	0	ENST00000304494.5:c.225_243del	p.Ala76CysfsTer64	p.A76Cfs*64	ENST00000304494	NM_000077.4	75	ccCGCCACTCTCACCCGACCC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCGGGTGAGAGTGGCG	GGGTCGGGTGAGAGTGGCG	-	rs730881674		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	34	364	0	ENST00000304494.5:c.225_243del	p.Ala76CysfsTer64	p.A76Cfs*64	ENST00000304494	NM_000077.4	75	ccCGCCACTCTCACCCGACCC/cc																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	122	293	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660045		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	60	330	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112164585	112164585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs398123116		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	115	262	0	ENST00000257430.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tgG/tgA																																																																														
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs759145490		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	42	283	0	ENST00000222390.5:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000222390	NM_000601.4	424	Cgt/Tgt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67569301	67569301	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	83	331	0	ENST00000274335.5:c.418G>T	p.Glu140Ter	p.E140*	ENST00000274335		140	Gaa/Taa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69631153	69631153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	124	432	0	ENST00000334134.2:c.259G>T	p.Ala87Ser	p.A87S	ENST00000334134	NM_005247.2	87	Gcc/Tcc																																																																														
ATM	472	MSKCC	GRCh37	11	108119669	108119669	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	28	122	0	ENST00000278616.4:c.1075G>T	p.Glu359Ter	p.E359*	ENST00000278616	NM_000051.3	359	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108175490	108175490	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	188	341	0	ENST00000278616.4:c.5585T>C	p.Leu1862Pro	p.L1862P	ENST00000278616	NM_000051.3	1862	cTt/cCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576663	7577000	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTT	AAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTT	-			P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	122	385	0	ENST00000269305.4:c.919+19_993+190del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665336	117665336	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1404057865		P-0032343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	169	402	0	ENST00000368508.3:c.4411G>A	p.Ala1471Thr	p.A1471T	ENST00000368508	NM_002944.2	1471	Gcc/Acc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0032477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	93	390	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0032477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	153	718	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76918987	76918987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	53	525	0	ENST00000373344.5:c.4004G>C	p.Arg1335Thr	p.R1335T	ENST00000373344	NM_000489.3	1335	aGa/aCa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728798	190728798	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201205478		P-0032966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	108	322	0	ENST00000441310.2:c.2186A>G	p.Asn729Ser	p.N729S	ENST00000441310	NM_000534.4	729	aAt/aGt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968233	134968233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753895808		P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	127	566	0	ENST00000398015.3:c.2746G>A	p.Val916Met	p.V916M	ENST00000398015	NM_004441.4	916	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112174253	112174253	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	103	423	1	ENST00000257430.4:c.2962G>T	p.Glu988Ter	p.E988*	ENST00000257430	NM_000038.5	988	Gaa/Taa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608544	28608544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs763688464		P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	307	507	0	ENST00000241453.7:c.1598G>A	p.Gly533Asp	p.G533D	ENST00000241453	NM_004119.2	533	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	189	656	0	ENST00000269305.4:c.659del	p.Tyr220LeufsTer27	p.Y220Lfs*27	ENST00000269305	NM_001126112.2	220	tAt/tt																																																																														
MST1	4485	MSKCC	GRCh37	3	49723144	49723148	+	frameshift_variant	Frame_Shift_Del	DEL	CGGTT	CGGTT	-			P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	146	578	0	ENST00000449682.2:c.1268_1272del	p.Glu423AlafsTer16	p.E423Afs*16	ENST00000449682	NM_020998.3	423	gAACCG/g																																																																														
APC	324	MSKCC	GRCh37	5	112176427	112176427	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	67	304	0	ENST00000257430.4:c.5136A>C	p.Glu1712Asp	p.E1712D	ENST00000257430	NM_000038.5	1712	gaA/gaC																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741986	145741986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	149	610	0	ENST00000428558.2:c.517C>G	p.Gln173Glu	p.Q173E	ENST00000428558	NM_004260.3	173	Cag/Gag																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045670	26045670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	58	330	0	ENST00000540144.1:c.32C>G	p.Ser11Cys	p.S11C	ENST00000540144	NM_003531.2	11	tCt/tGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373791	118373791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	135	369	0	ENST00000534358.1:c.7184C>T	p.Ser2395Phe	p.S2395F	ENST00000534358	NM_005933.3	2395	tCt/tTt																																																																														
TOP1	7150	MSKCC	GRCh37	20	39713178	39713178	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs957960003		P-0034327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	112	303	1	ENST00000361337.2:c.584C>T	p.Pro195Leu	p.P195L	ENST00000361337	NM_003286.2	195	cCg/cTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52696240	52696240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757924256		P-0034327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	193	812	1	ENST00000394830.3:c.437G>A	p.Arg146Gln	p.R146Q	ENST00000394830	NM_018313.4	146	cGa/cAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913428		P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			595	79	635	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913465		P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			556	60	604	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745555	162745555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			488	46	518	0	ENST00000367921.3:c.1970T>A	p.Met657Lys	p.M657K	ENST00000367921	NM_006182.2	657	aTg/aAg																																																																														
CDH1	999	MSKCC	GRCh37	16	68857428	68857428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			629	84	551	1	ENST00000261769.5:c.2063G>A	p.Cys688Tyr	p.C688Y	ENST00000261769	NM_004360.3	688	tGt/tAt																																																																														
TET1	80312	MSKCC	GRCh37	10	70333323	70333324	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			695	88	837	2	ENST00000373644.4:c.1228_1229delinsTT	p.Gly410Phe	p.G410F	ENST00000373644	NM_030625.2	410	GGt/TTt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337681	73337681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			261	30	229	0	ENST00000377767.4:c.2035C>T	p.His679Tyr	p.H679Y	ENST00000377767	NM_014953.3	679	Cat/Tat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218453	36218453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			602	78	751	0	ENST00000222270.7:c.4232G>T	p.Gly1411Val	p.G1411V	ENST00000222270	NM_014727.1	1411	gGg/gTg																																																																														
ALK	238	MSKCC	GRCh37	2	29416469	29416469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			800	98	941	0	ENST00000389048.3:c.4484C>A	p.Ser1495Tyr	p.S1495Y	ENST00000389048	NM_004304.4	1495	tCc/tAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023704	31023704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			704	92	757	0	ENST00000375687.4:c.3189G>T	p.Gln1063His	p.Q1063H	ENST00000375687	NM_015338.5	1063	caG/caT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827952	40827952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			541	38	581	0	ENST00000373198.4:c.2476C>A	p.Pro826Thr	p.P826T	ENST00000373198	NM_133170.3	826	Ccc/Acc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521616	89521616	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			366	36	411	0	ENST00000336596.2:c.2693C>T	p.Pro898Leu	p.P898L	ENST00000336596	NM_005233.5	898	cCa/cTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151919153	151919153	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A	rs1470642402		P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			271	23	276	0	ENST00000262189.6:c.3434-2A>T		p.X1145_splice	ENST00000262189	NM_170606.2	1145																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8499759	8499759	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1297546114		P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			522	65	525	0	ENST00000356435.5:c.2210C>T	p.Pro737Leu	p.P737L	ENST00000356435		737	cCc/cTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70343005	70343005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			704	73	725	1	ENST00000374080.3:c.1546C>G	p.Arg516Gly	p.R516G	ENST00000374080		516	Cgt/Ggt																																																																														
MED12	9968	MSKCC	GRCh37	X	70349640	70349640	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034638-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			699	51	775	0	ENST00000374080.3:c.3802A>T	p.Ile1268Phe	p.I1268F	ENST00000374080		1268	Atc/Ttc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827936	40827936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	91	565	0	ENST00000373198.4:c.2492G>A	p.Ser831Asn	p.S831N	ENST00000373198	NM_133170.3	831	aGc/aAc																																																																														
VHL	7428	MSKCC	GRCh37	3	10183733	10183733	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	112	698	0	ENST00000256474.2:c.202del	p.Ser68ArgfsTer91	p.S68Rfs*91	ENST00000256474	NM_000551.3	68	Tcg/cg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597499	52597499	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	63	353	0	ENST00000394830.3:c.3811del	p.Val1271PhefsTer17	p.V1271Ffs*17	ENST00000394830	NM_018313.4	1271	Gtt/tt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105848	27105849	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTCT			P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	272	626	0	ENST00000324856.7:c.5460_5461insCTCTT	p.Asp1821LeufsTer64	p.D1821Lfs*64	ENST00000324856	NM_006015.4	1820	aat/aaTCTCTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431006	49431006	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	325	709	0	ENST00000301067.7:c.10133C>G	p.Ser3378Ter	p.S3378*	ENST00000301067	NM_003482.3	3378	tCa/tGa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434939	49434940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	230	538	0	ENST00000301067.7:c.6613dup	p.Ala2205GlyfsTer38	p.A2205Gfs*38	ENST00000301067	NM_003482.3	2205	gcc/gGcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	242	403	0	ENST00000262367.5:c.4337del	p.Arg1446ProfsTer13	p.R1446Pfs*13	ENST00000262367	NM_004380.2	1446	cGc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	327	604	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246462	41246462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	86	855	0	ENST00000357654.3:c.1086G>C	p.Glu362Asp	p.E362D	ENST00000357654	NM_007294.3	362	gaG/gaC																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395710	45395710	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	252	450	0	ENST00000262160.6:c.424G>T	p.Glu142Ter	p.E142*	ENST00000262160	NM_005901.5	142	Gaa/Taa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	54	381	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098959	178098959	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519921		P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	157	326	0	ENST00000397062.3:c.86A>G	p.Asp29Gly	p.D29G	ENST00000397062	NM_006164.4	29	gAt/gGt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266611	198266611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs755415626		P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	209	430	0	ENST00000335508.6:c.2225G>A	p.Gly742Asp	p.G742D	ENST00000335508	NM_012433.2	742	gGt/gAt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021697	31021697	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	255	538	0	ENST00000375687.4:c.1696G>T	p.Glu566Ter	p.E566*	ENST00000375687	NM_015338.5	566	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	322	566	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	175	389	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806582	1806582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	378	695	0	ENST00000260795.2:c.1298C>G	p.Ser433Cys	p.S433C	ENST00000260795		433	tCc/tGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247192	153247192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	235	424	0	ENST00000281708.4:c.1610T>C	p.Leu537Ser	p.L537S	ENST00000281708	NM_033632.3	537	tTg/tCg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	285	396	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
HGF	3082	MSKCC	GRCh37	7	81350071	81350071	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	244	443	0	ENST00000222390.5:c.1261G>C	p.Asp421His	p.D421H	ENST00000222390	NM_000601.4	421	Gac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	63	569	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120460308	120460308	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs312262801		P-0035749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	37	615	0	ENST00000256646.2:c.6007C>T	p.Arg2003Ter	p.R2003*	ENST00000256646	NM_024408.3	2003	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934573		P-0035993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	108	640	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
NF2	4771	MSKCC	GRCh37	22	30032748	30032748	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	114	421	0	ENST00000338641.4:c.123G>A	p.Trp41Ter	p.W41*	ENST00000338641	NM_000268.3	41	tgG/tgA																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517537	176517537	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772536234		P-0036721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	44	935	0	ENST00000292408.4:c.238C>T	p.Arg80Trp	p.R80W	ENST00000292408	NM_213647.1	80	Cgg/Tgg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37665979	37665979	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	55	529	0	ENST00000447079.4:c.2631T>G	p.Asp877Glu	p.D877E	ENST00000447079	NM_015083.1	877	gaT/gaG																																																																														
CDK12	51755	MSKCC	GRCh37	17	37646955	37646956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACCT			P-0037023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	34	585	0	ENST00000447079.4:c.2080_2084dup	p.Gln695HisfsTer60	p.Q695Hfs*60	ENST00000447079	NM_015083.1	693	cca/cCACCTca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0037024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	47	669	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519930		P-0037024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	36	531	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs199469669		P-0037024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	29	675	1	ENST00000374080.3:c.130G>C	p.Gly44Arg	p.G44R	ENST00000374080		44	Ggt/Cgt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896539	78896539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	72	747	1	ENST00000306801.3:c.2536C>T	p.Arg846Trp	p.R846W	ENST00000306801	NM_020761.2	846	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	607	661	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	115	416	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575068	48575068	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	131	445	0	ENST00000342988.3:c.262A>T	p.Lys88Ter	p.K88*	ENST00000342988	NM_005359.5	88	Aaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	94	366	0	ENST00000371953.3:c.801+1G>C		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710544	114710545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	171	390	0	ENST00000543371.1:c.30dup	p.Asp11Ter	p.D11*	ENST00000543371	NM_001198531.1	10	gat/gaTt																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022687	12022687	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1047383225		P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	223	487	0	ENST00000396373.4:c.793G>A	p.Val265Met	p.V265M	ENST00000396373	NM_001987.4	265	Gtg/Atg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482425	56482425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	112	621	0	ENST00000267101.3:c.973G>C	p.Gly325Arg	p.G325R	ENST00000267101	NM_001982.3	325	Gga/Cga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061176	38061176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	166	250	0	ENST00000250448.2:c.813G>T	p.Gln271His	p.Q271H	ENST00000250448	NM_004496.3	271	caG/caT																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252956	36252964	+	inframe_deletion	In_Frame_Del	DEL	TGCCAGCCA	TGCCAGCCA	-			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	43	421	0	ENST00000300305.3:c.398_406del	p.Met133_Gly135del	p.M133_G135del	ENST00000300305		133	aTGGCTGGCAat/aat																																																																														
IDH1	3417	MSKCC	GRCh37	2	209101835	209101838	+	missense_variant	Missense_Mutation	ONP	AGTT	AGTT	CGTG			P-0037026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	72	637	0	ENST00000345146.2:c.1210_1213delinsCACG	p.Asn404_Leu405delinsHisVal	p.N404_L405delinsHV	ENST00000345146	NM_005896.2	404	AACTtg/CACGtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	71	522	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	31	315	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	283	607	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
APC	324	MSKCC	GRCh37	5	112175221	112175221	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	101	263	0	ENST00000257430.4:c.3930del	p.Ile1311LeufsTer10	p.I1311Lfs*10	ENST00000257430	NM_000038.5	1310	aaG/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427531	49427531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780464972		P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	67	563	2	ENST00000301067.7:c.10957G>A	p.Gly3653Arg	p.G3653R	ENST00000301067	NM_003482.3	3653	Gga/Aga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912183	114912183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	182	518	0	ENST00000543371.1:c.1253C>G	p.Ser418Cys	p.S418C	ENST00000543371	NM_001198531.1	418	tCc/tGc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148507475	148507475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	81	457	0	ENST00000320356.2:c.1979G>T	p.Gly660Val	p.G660V	ENST00000320356	NM_004456.4	660	gGg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151841899	151841899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773125481		P-0037066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	71	423	1	ENST00000262189.6:c.14242G>A	p.Ala4748Thr	p.A4748T	ENST00000262189	NM_170606.2	4748	Gca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	313	610	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	141	449	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175891	112175891	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	95	290	0	ENST00000257430.4:c.4602del	p.Asn1535MetfsTer30	p.N1535Mfs*30	ENST00000257430	NM_000038.5	1534	Ggg/gg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368213	45368213	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	292	416	0	ENST00000262160.6:c.1389C>A	p.Cys463Ter	p.C463*	ENST00000262160	NM_005901.5	463	tgC/tgA																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67358656	67358657	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	251	486	0	ENST00000327367.4:c.164_165delinsAT	p.Ile55Asn	p.I55N	ENST00000327367	NM_005902.3	55	aTC/aAT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022697	31022697	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	181	614	1	ENST00000375687.4:c.2182G>T	p.Glu728Ter	p.E728*	ENST00000375687	NM_015338.5	728	Gaa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259232	89259232	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	151	535	0	ENST00000336596.2:c.376G>T	p.Glu126Ter	p.E126*	ENST00000336596	NM_005233.5	126	Gag/Tag																																																																														
ABL1	25	MSKCC	GRCh37	9	133710843	133710843	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	90	243	0	ENST00000318560.5:c.10A>G	p.Ile4Val	p.I4V	ENST00000318560	NM_005157.4	4	Atc/Gtc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692964	89692964	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs786204934		P-0037140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	100	384	0	ENST00000371953.3:c.448G>T	p.Glu150Ter	p.E150*	ENST00000371953	NM_000314.4	150	Gag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243701	41243701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	83	507	0	ENST00000357654.3:c.3847C>T	p.His1283Tyr	p.H1283Y	ENST00000357654	NM_007294.3	1283	Cat/Tat																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919879	50919879	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866317622		P-0037140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	56	488	0	ENST00000440232.2:c.2966C>T	p.Thr989Met	p.T989M	ENST00000440232	NM_002691.3	989	aCg/aTg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25990461	25990462	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0037140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	148	343	0	ENST00000435504.4:c.765_766del	p.Arg255SerfsTer10	p.R255Sfs*10	ENST00000435504		255	agACtc/agtc																																																																														
SYK	6850	MSKCC	GRCh37	9	93606457	93606458	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	128	509	0	ENST00000375746.1:c.280dup	p.Gln94ProfsTer4	p.Q94Pfs*4	ENST00000375746	NM_001174167.1	93	tcc/tCcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	49	463	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs786201838		P-0037192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	56	594	1	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584605	48584606	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0037192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	31	430	0	ENST00000342988.3:c.779dup	p.Tyr260Ter	p.Y260*	ENST00000342988	NM_005359.5	260	tac/tAac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860276	151860276	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	41	570	0	ENST00000262189.6:c.10386del	p.Phe3462LeufsTer5	p.F3462Lfs*5	ENST00000262189	NM_170606.2	3462	ttT/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	102	561	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	185	456	2	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909227		P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	190	473	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	277	601	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916836	178916836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	242	600	0	ENST00000263967.3:c.223C>G	p.Gln75Glu	p.Q75E	ENST00000263967	NM_006218.2	75	Caa/Gaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	160	329	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231782	36231782	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74315450		P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	33	614	0	ENST00000300305.3:c.602G>A	p.Arg201Gln	p.R201Q	ENST00000300305		201	cGa/cAa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191199	2191199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	257	685	0	ENST00000398665.3:c.453C>G	p.Ile151Met	p.I151M	ENST00000398665	NM_032482.2	151	atC/atG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056147	27056154	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTCCAA	CAGTCCAA	GAC			P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	186	471	1	ENST00000324856.7:c.1143_1150delinsGAC	p.Ser382ThrfsTer16	p.S382Tfs*16	ENST00000324856	NM_006015.4	381	tcCAGTCCAAtg/tcGACtg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097781	27097781	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	194	461	0	ENST00000324856.7:c.3370A>T	p.Lys1124Ter	p.K1124*	ENST00000324856	NM_006015.4	1124	Aag/Tag																																																																														
RFWD2	0	MSKCC	GRCh37	1	176176011	176176011	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	152	329	0	ENST00000367669.3:c.104C>G	p.Pro35Arg	p.P35R	ENST00000367669	NM_022457.5	35	cCg/cGg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204944	128204944	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs777283796		P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	248	786	0	ENST00000341105.2:c.497C>G	p.Ser166Cys	p.S166C	ENST00000341105	NM_032638.4	166	tCt/tGt																																																																														
KDR	3791	MSKCC	GRCh37	4	55948169	55948169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	252	555	0	ENST00000263923.4:c.3802G>C	p.Glu1268Gln	p.E1268Q	ENST00000263923	NM_002253.2	1268	Gag/Cag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370827	55370828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	182	493	0	ENST00000297316.4:c.131_132dup	p.Lys45Ter	p.K45*	ENST00000297316	NM_022454.3	43	-/GT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517974	8517974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	182	564	1	ENST00000356435.5:c.1417G>A	p.Asp473Asn	p.D473N	ENST00000356435		473	Gac/Aac																																																																														
TEK	7010	MSKCC	GRCh37	9	27203085	27203085	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	85	588	0	ENST00000380036.4:c.2177C>G	p.Ser726Cys	p.S726C	ENST00000380036	NM_000459.3	726	tCt/tGt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123199729	123199729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	140	403	0	ENST00000218089.9:c.2029G>A	p.Glu677Lys	p.E677K	ENST00000218089	NM_001042749.1	677	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199469672		P-0037237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	17	228	0	ENST00000374080.3:c.131G>T	p.Gly44Val	p.G44V	ENST00000374080		44	gGt/gTt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442051	52442054	+	frameshift_variant	Frame_Shift_Del	DEL	GCAC	GCAC	-			P-0037237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	75	453	0	ENST00000460680.1:c.295_298del	p.Val99SerfsTer2	p.V99Sfs*2	ENST00000460680	NM_004656.3	99	GTGCtc/tc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026115	71026115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	65	348	0	ENST00000318789.4:c.1507del	p.Arg503AspfsTer24	p.R503Dfs*24	ENST00000318789	NM_032682.5	503	Cga/ga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	74	363	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	90	635	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	74	510	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	83	610	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	197	459	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
RARA	5914	MSKCC	GRCh37	17	38511575	38511575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866375031		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	100	637	0	ENST00000254066.5:c.1073C>T	p.Ala358Val	p.A358V	ENST00000254066	NM_000964.3	358	gCg/gTg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	90	530	8	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	138	914	1	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	25	313	1	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	101	507	0	ENST00000379607.5:c.38G>A	p.Arg13His	p.R13H	ENST00000379607	NM_001412.3	13	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25368433	25368434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	72	436	0	ENST00000256078.4:c.511dup	p.Ile171AsnfsTer14	p.I171Nfs*14	ENST00000256078	NM_033360.2	171	atc/aAtc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36989307	36989307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	91	553	0	ENST00000354822.5:c.28C>T	p.Arg10Trp	p.R10W	ENST00000354822	NM_001079668.2	10	Cgg/Tgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2189768	2189768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1479024523		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	124	772	0	ENST00000398665.3:c.238C>T	p.Arg80Cys	p.R80C	ENST00000398665	NM_032482.2	80	Cgt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992720	68992720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182978151		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	195	644	0	ENST00000288368.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000288368	NM_024870.2	562	cGt/cAt																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	82	755	1	ENST00000312629.5:c.870del	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874013	151874013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1248944002		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	61	669	1	ENST00000262189.6:c.8525del	p.Asn2842MetfsTer21	p.N2842Mfs*21	ENST00000262189	NM_170606.2	2842	aAt/at																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041391	47041391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	104	762	0	ENST00000329236.7:c.1501G>A	p.Gly501Ser	p.G501S	ENST00000329236	NM_001204466.1	501	Ggc/Agc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467922	50467922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	77	515	0	ENST00000331340.3:c.1157G>A	p.Arg386His	p.R386H	ENST00000331340	NM_006060.4	386	cGc/cAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256497	115256497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	137	648	0	ENST00000369535.4:c.214A>G	p.Met72Val	p.M72V	ENST00000369535	NM_002524.4	72	Atg/Gtg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711887	89711888	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	92	426	2	ENST00000371953.3:c.506_507del	p.Pro169GlnfsTer10	p.P169Qfs*10	ENST00000371953	NM_000314.4	169	CCc/c																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937431	32937431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80359052		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	104	570	0	ENST00000380152.3:c.8092G>A	p.Ala2698Thr	p.A2698T	ENST00000380152		2698	Gca/Aca																																																																														
B2M	567	MSKCC	GRCh37	15	45007845	45007846	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	88	571	0	ENST00000558401.1:c.293_294del	p.Tyr98CysfsTer16	p.Y98Cfs*16	ENST00000558401	NM_004048.2	98	TAt/t																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822355	72822355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	139	944	0	ENST00000268489.5:c.9820G>A	p.Ala3274Thr	p.A3274T	ENST00000268489	NM_006885.3	3274	Gcc/Acc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351436	89351436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	66	676	0	ENST00000301030.4:c.1514C>T	p.Ser505Phe	p.S505F	ENST00000301030	NM_001256183.1	505	tCc/tTc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40483531	40483532	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	72	456	0	ENST00000264657.5:c.1067_1068del	p.Pro356ArgfsTer7	p.P356Rfs*7	ENST00000264657	NM_139276.2	356	cCT/c																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39584320	39584320	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	43	212	1	ENST00000262039.4:c.985G>A	p.Ala329Thr	p.A329T	ENST00000262039	NM_002647.2	329	Gcc/Acc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639587	47639588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	57	312	0	ENST00000233146.2:c.687dup	p.Ala230SerfsTer2	p.A230Sfs*2	ENST00000233146	NM_000251.2	227	aga/agAa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044416	128044416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	147	773	2	ENST00000285398.2:c.1205G>A	p.Gly402Asp	p.G402D	ENST00000285398	NM_000122.1	402	gGc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790046	40790046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	129	646	0	ENST00000373198.4:c.2685G>T	p.Gln895His	p.Q895H	ENST00000373198	NM_133170.3	895	caG/caT																																																																														
GNAS	2778	MSKCC	GRCh37	20	57480498	57480498	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137854532		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	114	409	1	ENST00000371085.3:c.493C>T	p.Arg165Cys	p.R165C	ENST00000371085	NM_000516.4	165	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112177785	112177785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	33	314	0	ENST00000257430.4:c.6494C>T	p.Pro2165Leu	p.P2165L	ENST00000257430	NM_000038.5	2165	cCa/cTa																																																																														
LYN	4067	MSKCC	GRCh37	8	56859023	56859023	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	96	448	0	ENST00000519728.1:c.149T>C	p.Leu50Pro	p.L50P	ENST00000519728	NM_002350.3	50	cTt/cCt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104585	69104585	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	132	770	0	ENST00000288368.4:c.4429A>G	p.Asn1477Asp	p.N1477D	ENST00000288368	NM_024870.2	1477	Aac/Gac																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482341	87482341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	102	615	0	ENST00000277120.3:c.1628A>G	p.Asp543Gly	p.D543G	ENST00000277120		543	gAc/gGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942717	44942717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	74	475	1	ENST00000377967.4:c.3297G>T	p.Gln1099His	p.Q1099H	ENST00000377967	NM_021140.2	1099	caG/caT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410721	63410721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765543269		P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	115	779	2	ENST00000330258.3:c.2446C>T	p.Arg816Trp	p.R816W	ENST00000330258	NM_152424.3	816	Cgg/Tgg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412395	63412395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	77	938	0	ENST00000330258.3:c.772C>T	p.Pro258Ser	p.P258S	ENST00000330258	NM_152424.3	258	Cca/Tca																																																																														
MED12	9968	MSKCC	GRCh37	X	70354619	70354619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	145	703	1	ENST00000374080.3:c.4784C>T	p.Ala1595Val	p.A1595V	ENST00000374080		1595	gCt/gTt																																																																														
XIAP	331	MSKCC	GRCh37	X	123026585	123026585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	79	411	2	ENST00000355640.3:c.1061G>T	p.Arg354Ile	p.R354I	ENST00000355640		354	aGa/aTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519839		P-0037274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	62	262	0	ENST00000274335.5:c.1678G>T	p.Asp560Tyr	p.D560Y	ENST00000274335		560	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577526	7577526	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121912653		P-0037274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	84	557	0	ENST00000269305.4:c.755T>C	p.Leu252Pro	p.L252P	ENST00000269305	NM_001126112.2	252	cTc/cCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928225	178928225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	76	410	0	ENST00000263967.3:c.1411C>G	p.Pro471Ala	p.P471A	ENST00000263967	NM_006218.2	471	Cca/Gca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692818	89692818	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1339631701		P-0037274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	45	215	0	ENST00000371953.3:c.302T>C	p.Ile101Thr	p.I101T	ENST00000371953	NM_000314.4	101	aTc/aCc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720858	89720858	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	48	193	0	ENST00000371953.3:c.1012del	p.Ser338LeufsTer6	p.S338Lfs*6	ENST00000371953	NM_000314.4	337	Ttt/tt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591032	67591042	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGAAGATTG	GAAGAAGATTG	-			P-0037274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	36	210	0	ENST00000274335.5:c.1633_1643del	p.Asp548AlafsTer4	p.D548Afs*4	ENST00000274335		542	aGAAGAAGATTG/a																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023475	31023475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	74	423	1	ENST00000375687.4:c.2960G>A	p.Gly987Glu	p.G987E	ENST00000375687	NM_015338.5	987	gGa/gAa																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056478	26056478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	41	252	0	ENST00000343677.2:c.179C>A	p.Ala60Asp	p.A60D	ENST00000343677	NM_005319.3	60	gCt/gAt																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192600	138192600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	39	371	0	ENST00000237289.4:c.236G>C	p.Ser79Thr	p.S79T	ENST00000237289	NM_001270507.1	79	aGc/aCc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0037304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	16	241	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0037304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	9	588	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928924	44928924	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	63	228	0	ENST00000377967.4:c.2024G>T	p.Gly675Val	p.G675V	ENST00000377967	NM_021140.2	675	gGt/gTt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231782	36231782	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74315450		P-0037304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	10	639	1	ENST00000300305.3:c.602G>A	p.Arg201Gln	p.R201Q	ENST00000300305		201	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	302	397	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587782664		P-0037398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	231	447	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827927	40827927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536150112		P-0037398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	219	494	0	ENST00000373198.4:c.2501G>A	p.Arg834His	p.R834H	ENST00000373198	NM_133170.3	834	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCGGGTGAGAGTGGCG			P-0037398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	120	225	0	ENST00000304494.5:c.225_243dup	p.Val82ArgfsTer44	p.V82Rfs*44	ENST00000304494	NM_000077.4	81	-/CGCCACTCTCACCCGACCC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCGGGTGAGAGTGGCG			P-0037398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	120	225	0	ENST00000304494.5:c.225_243dup	p.Val82ArgfsTer44	p.V82Rfs*44	ENST00000304494	NM_000077.4	81	-/CGCCACTCTCACCCGACCC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCGGGTGAGAGTGGCG			P-0037398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	120	225	0	ENST00000304494.5:c.225_243dup	p.Val82ArgfsTer44	p.V82Rfs*44	ENST00000304494	NM_000077.4	81	-/CGCCACTCTCACCCGACCC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603146	48603146	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0037398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	164	375	0	ENST00000342988.3:c.1447del	p.Ser483ValfsTer21	p.S483Vfs*21	ENST00000342988	NM_005359.5	483	Agt/gt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	91	418	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0037457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	67	329	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903772	114903772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	24	429	0	ENST00000543371.1:c.776G>A	p.Trp259Ter	p.W259*	ENST00000543371	NM_001198531.1	259	tGg/tAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435201	18435202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	14	306	0	ENST00000266497.5:c.192dup	p.Val65CysfsTer16	p.V65Cfs*16	ENST00000266497		62	-/T																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119841	70119842	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	72	616	0	ENST00000245479.2:c.844dup	p.Val282GlyfsTer14	p.V282Gfs*14	ENST00000245479	NM_000346.3	281	-/G																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374944	45374944	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	81	500	0	ENST00000262160.6:c.899A>T	p.Asp300Val	p.D300V	ENST00000262160	NM_005901.5	300	gAt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764146326		P-0037524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	185	637	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0037524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	334	640	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1114167568		P-0037524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	160	299	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0037524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	219	421	17	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																														
APC	324	MSKCC	GRCh37	5	112174043	112174044	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0037524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	89	330	0	ENST00000257430.4:c.2756_2757del	p.Arg919LysfsTer4	p.R919Kfs*4	ENST00000257430	NM_000038.5	918	GAg/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1264568	1264568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761308654		P-0037524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	141	455	0	ENST00000310581.5:c.2794G>A	p.Gly932Ser	p.G932S	ENST00000310581	NM_198253.2	932	Ggc/Agc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909231		P-0037527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	115	232	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
RET	5979	MSKCC	GRCh37	10	43613906	43613906	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs75030001		P-0037527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	60	511	0	ENST00000355710.3:c.2370G>T	p.Leu790Phe	p.L790F	ENST00000355710	NM_020975.4	790	ttG/ttT																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572227	64572227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060499991		P-0037527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	340	512	0	ENST00000337652.1:c.1427G>A	p.Trp476Ter	p.W476*	ENST00000337652	NM_130803.2	476	tGg/tAg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987059	36987059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	159	502	0	ENST00000354822.5:c.630C>G	p.Phe210Leu	p.F210L	ENST00000354822	NM_001079668.2	210	ttC/ttG																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288002	33288002	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0037527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	263	398	0	ENST00000374542.5:c.1252-1G>A		p.X418_splice	ENST00000374542	NM_001141970.1	418																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49434958	49434958	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs398123753		P-0037546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	36	503	0	ENST00000301067.7:c.6595del	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2199	Tat/at																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435072	49435072	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	34	565	0	ENST00000301067.7:c.6481del	p.Leu2161SerfsTer103	p.L2161Sfs*103	ENST00000301067	NM_003482.3	2161	Ctc/tc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120785312	120785312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	32	593	0	ENST00000257552.2:c.796C>T	p.Pro266Ser	p.P266S	ENST00000257552	NM_002442.3	266	Cct/Tct																																																																														
CDK8	1024	MSKCC	GRCh37	13	26970436	26970436	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	18	161	0	ENST00000381527.3:c.805G>C	p.Asp269His	p.D269H	ENST00000381527	NM_001260.1	269	Gat/Cat																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43783886	43783886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	78	703	4	ENST00000382044.4:c.352C>A	p.Gln118Lys	p.Q118K	ENST00000382044	NM_001141980.1	118	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	53	795	1	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																														
CIC	23152	MSKCC	GRCh37	19	42791223	42791223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	48	805	0	ENST00000575354.2:c.283G>C	p.Glu95Gln	p.E95Q	ENST00000575354	NM_015125.3	95	Gag/Cag																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721114	61721114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	49	522	0	ENST00000401558.2:c.1160C>G	p.Ser387Cys	p.S387C	ENST00000401558	NM_003400.3	387	tCt/tGt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458323	12458323	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	66	734	0	ENST00000287820.6:c.940C>G	p.Gln314Glu	p.Q314E	ENST00000287820	NM_015869.4	314	Cag/Gag																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374998	149374998	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	84	859	1	ENST00000360632.3:c.96C>G	p.Phe32Leu	p.F32L	ENST00000360632	NM_015472.4	32	ttC/ttG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	33	378	0				ENST00000310581	NM_198253.2																																																																																
RXRA	6256	MSKCC	GRCh37	9	137293637	137293637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531899705		P-0037546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	66	932	2	ENST00000481739.1:c.188C>T	p.Pro63Leu	p.P63L	ENST00000481739	NM_002957.4	63	cCg/cTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	81	167	0				ENST00000310581	NM_198253.2																																																																																
NF2	4771	MSKCC	GRCh37	22	30054221	30054221	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	180	483	0	ENST00000338641.4:c.643G>T	p.Glu215Ter	p.E215*	ENST00000338641	NM_000268.3	215	Gag/Tag																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888139	112888139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	189	584	0	ENST00000351677.2:c.155C>G	p.Thr52Ser	p.T52S	ENST00000351677	NM_002834.3	52	aCc/aGc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557514	21557515	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	232	673	0	ENST00000382592.4:c.2330dup	p.Leu777PhefsTer4	p.L777Ffs*4	ENST00000382592	NM_014572.2	777	ttg/ttTg																																																																														
B2M	567	MSKCC	GRCh37	15	45007820	45007821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	97	569	0	ENST00000558401.1:c.269dup	p.Thr91HisfsTer4	p.T91Hfs*4	ENST00000558401	NM_004048.2	89	-/T																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095539	178095540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	147	551	0	ENST00000397062.3:c.1791dup	p.Lys598Ter	p.K598*	ENST00000397062	NM_006164.4	597	-/T																																																																														
FANCC	2176	MSKCC	GRCh37	9	97934323	97934323	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	64	339	1	ENST00000289081.3:c.452A>G	p.Lys151Arg	p.K151R	ENST00000289081	NM_000136.2	151	aAa/aGa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941825	44941825	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	128	198	0	ENST00000377967.4:c.3152del	p.Asn1051MetfsTer32	p.N1051Mfs*32	ENST00000377967	NM_021140.2	1050	gAa/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0037647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	242	444	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	216	738	5	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	125	470	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	162	522	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112174058	112174058	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	42	325	0	ENST00000257430.4:c.2767A>T	p.Arg923Ter	p.R923*	ENST00000257430	NM_000038.5	923	Aga/Tga																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665110	182665110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1361986556		P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	53	378	0	ENST00000292782.4:c.616C>T	p.Arg206Ter	p.R206*	ENST00000292782	NM_020640.2	206	Cga/Tga																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020866	26020866	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	92	347	0	ENST00000357647.3:c.149G>C	p.Arg50Pro	p.R50P	ENST00000357647	NM_003529.2	50	cGc/cCc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911170	29911170	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs199474532		P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	45	408	0	ENST00000376809.5:c.469T>G	p.Trp157Gly	p.W157G	ENST00000376809	NM_002116.7	157	Tgg/Ggg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323208	31323208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	271	643	0	ENST00000412585.2:c.781G>A	p.Gly261Arg	p.G261R	ENST00000412585	NM_005514.6	261	Gga/Aga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	13	274	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0037683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	31	500	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427231	49427231	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs746280829		P-0037683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	40	778	0	ENST00000301067.7:c.11257A>G	p.Ile3753Val	p.I3753V	ENST00000301067	NM_003482.3	3753	Atc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	738	695	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
SDHA	6389	MSKCC	GRCh37	5	240539	240539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	13	33	0	ENST00000264932.6:c.1499G>C	p.Arg500Thr	p.R500T	ENST00000264932	NM_004168.2	500	aGa/aCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428229	49428229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	143	694	1	ENST00000301067.7:c.10471C>T	p.Arg3491Cys	p.R3491C	ENST00000301067	NM_003482.3	3491	Cgt/Tgt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349447	73349447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	576	543	0	ENST00000377767.4:c.889C>T	p.Leu297Phe	p.L297F	ENST00000377767	NM_014953.3	297	Ctc/Ttc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134422	30134422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	144	565	0	ENST00000263025.4:c.109G>C	p.Asp37His	p.D37H	ENST00000263025	NM_002746.2	37	Gac/Cac																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45375007	45375007	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	201	556	0	ENST00000262160.6:c.836A>G	p.Tyr279Cys	p.Y279C	ENST00000262160	NM_005901.5	279	tAt/tGt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164458	36164458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	37	197	0	ENST00000300305.3:c.1417G>C	p.Glu473Gln	p.E473Q	ENST00000300305		473	Gag/Cag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31401588	31401588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	159	744	0	ENST00000344624.3:c.4076G>C	p.Arg1359Thr	p.R1359T	ENST00000344624		1359	aGa/aCa																																																																														
RB1	5925	MSKCC	GRCh37	13	48878177	48878181	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCG	TCTCG	-			P-0037689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	57	87	0	ENST00000267163.4:c.131_135del	p.Leu44GlnfsTer3	p.L44Qfs*3	ENST00000267163	NM_000321.2	43	ccTCTCGtc/cctc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0037769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	336	580	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	285	336	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	503	504	0	ENST00000269305.4:c.757A>C	p.Thr253Pro	p.T253P	ENST00000269305	NM_001126112.2	253	Acc/Ccc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	93	257	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0037791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	58	908	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112175288	112175288	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	114	336	0	ENST00000257430.4:c.3997A>T	p.Lys1333Ter	p.K1333*	ENST00000257430	NM_000038.5	1333	Aaa/Taa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636973	176636973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1215568879		P-0037791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	59	752	1	ENST00000439151.2:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000439151	NM_022455.4	525	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578183	7578184	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCT			P-0037791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	128	889	0	ENST00000269305.4:c.662_665dup	p.Pro223AlafsTer3	p.P223Afs*3	ENST00000269305	NM_001126112.2	222	ccg/ccAGCCg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58711302	58711302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	59	716	0	ENST00000305921.3:c.790G>T	p.Asp264Tyr	p.D264Y	ENST00000305921	NM_003620.3	264	Gac/Tac																																																																														
BARD1	580	MSKCC	GRCh37	2	215645800	215645800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	51	619	0	ENST00000260947.4:c.798G>C	p.Leu266Phe	p.L266F	ENST00000260947	NM_000465.2	266	ttG/ttC																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	167	357	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	257	683	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	290	667	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437697	52437697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	235	671	0	ENST00000460680.1:c.1464del	p.Ser489AlafsTer82	p.S489Afs*82	ENST00000460680	NM_004656.3	488	ccC/cc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685330	86685330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	24	123	0	ENST00000274376.6:c.3046C>T	p.Arg1016Cys	p.R1016C	ENST00000274376	NM_002890.2	1016	Cgt/Tgt																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	302	853	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	391	784	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500499	99500499	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771642071		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	230	628	0	ENST00000268035.6:c.3932C>T	p.Ser1311Leu	p.S1311L	ENST00000268035	NM_000875.3	1311	tCg/tTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	155	443	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs758740142		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	97	199	4	ENST00000265335.6:c.2801del	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	221	517	0	ENST00000378444.4:c.4862del	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	174	549	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
POLE	5426	MSKCC	GRCh37	12	133248860	133248860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116260568		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	304	585	0	ENST00000320574.5:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000320574	NM_006231.2	579	Cgc/Tgc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	137	485	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
RARA	5914	MSKCC	GRCh37	17	38512401	38512402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs745553450		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	176	705	2	ENST00000254066.5:c.1319dup	p.Pro441AlafsTer5	p.P441Afs*5	ENST00000254066	NM_000964.3	438	gcc/gCcc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81925132	81925132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199636472		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	99	532	0	ENST00000359376.3:c.923C>T	p.Ala308Val	p.A308V	ENST00000359376	NM_002661.3	308	gCg/gTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390120	89390120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	142	302	0	ENST00000336596.2:c.869G>T	p.Cys290Phe	p.C290F	ENST00000336596	NM_005233.5	290	tGc/tTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097830	8097830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1425866094		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	275	635	0	ENST00000346208.3:c.212C>T	p.Thr71Met	p.T71M	ENST00000346208		71	aCg/aTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29585494	29585494	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660428		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	74	232	0	ENST00000358273.4:c.4306G>A	p.Glu1436Lys	p.E1436K	ENST00000358273	NM_001042492.2	1436	Gaa/Aaa																																																																														
FYN	2534	MSKCC	GRCh37	6	112041211	112041211	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140762956		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	192	449	1	ENST00000368678.4:c.44C>T	p.Thr15Met	p.T15M	ENST00000368678		15	aCg/aTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	140	596	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	475	874	2	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	111	726	0	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344955	118344955	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	109	243	1	ENST00000534358.1:c.3086del	p.Lys1029ArgfsTer65	p.K1029Rfs*65	ENST00000534358	NM_005933.3	1027	ctA/ct																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522590	176522590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765924274		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	165	768	0	ENST00000292408.4:c.1687C>T	p.Arg563Trp	p.R563W	ENST00000292408	NM_213647.1	563	Cgg/Tgg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197281	94197282	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774440500		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	133	382	0	ENST00000323929.3:c.1222dup	p.Thr408AsnfsTer49	p.T408Nfs*49	ENST00000323929	NM_005591.3	408	aca/aAca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287468	46287469	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	126	376	0	ENST00000334344.6:c.5333dup	p.Asn1778LysfsTer4	p.N1778Kfs*4	ENST00000334344	NM_152641.2	1776	tta/ttAa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121888	2121888	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779275341		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	258	780	0	ENST00000219476.3:c.2050G>A	p.Val684Met	p.V684M	ENST00000219476	NM_000548.3	684	Gtg/Atg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	361	845	3	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258894	16258894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	177	672	3	ENST00000375759.3:c.6164del	p.Pro2055LeufsTer9	p.P2055Lfs*9	ENST00000375759	NM_015001.2	2053	aaC/aa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121437355	121437355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	256	720	0	ENST00000257555.6:c.1693C>A	p.Leu565Ile	p.L565I	ENST00000257555		565	Ctc/Atc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11319305	11319305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	39	462	0	ENST00000361445.4:c.162G>T	p.Glu54Asp	p.E54D	ENST00000361445	NM_004958.3	54	gaG/gaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023193	27023193	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	37	150	0	ENST00000324856.7:c.299T>C	p.Leu100Pro	p.L100P	ENST00000324856	NM_006015.4	100	cTg/cCg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65312372	65312372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	172	441	0	ENST00000342505.4:c.1947C>A	p.His649Gln	p.H649Q	ENST00000342505	NM_002227.2	649	caC/caA																																																																														
TET1	80312	MSKCC	GRCh37	10	70446207	70446207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	160	439	0	ENST00000373644.4:c.5147C>G	p.Thr1716Arg	p.T1716R	ENST00000373644	NM_030625.2	1716	aCa/aGa																																																																														
PGR	5241	MSKCC	GRCh37	11	100999024	100999024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	175	611	0	ENST00000325455.5:c.778del	p.Ala260ArgfsTer41	p.A260Rfs*41	ENST00000325455	NM_001202474.3	260	Gcg/cg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246677	46246677	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	39	140	0	ENST00000334344.6:c.4771C>T	p.Gln1591Ter	p.Q1591*	ENST00000334344	NM_152641.2	1591	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421834	49421834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117904191		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	116	766	0	ENST00000301067.7:c.14473C>T	p.Arg4825Trp	p.R4825W	ENST00000301067	NM_003482.3	4825	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434851	49434851	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1460481305		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	61	874	0	ENST00000301067.7:c.6702del	p.Arg2235AspfsTer29	p.R2235Dfs*29	ENST00000301067	NM_003482.3	2234	ccC/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443789	49443789	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	320	745	0	ENST00000301067.7:c.3582del	p.Thr1195HisfsTer17	p.T1195Hfs*17	ENST00000301067	NM_003482.3	1194	ccC/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444006	49444006	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541921137		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	235	660	1	ENST00000301067.7:c.3365C>T	p.Thr1122Ile	p.T1122I	ENST00000301067	NM_003482.3	1122	aCa/aTa																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484165	50484165	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	73	540	0	ENST00000394963.4:c.1015T>G	p.Cys339Gly	p.C339G	ENST00000394963	NM_003076.4	339	Tgt/Ggt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861804	57861804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	44	521	0	ENST00000228682.2:c.1105T>C	p.Cys369Arg	p.C369R	ENST00000228682	NM_005269.2	369	Tgc/Cgc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73345121	73345121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	123	284	0	ENST00000377767.4:c.1676C>T	p.Ala559Val	p.A559V	ENST00000377767	NM_014953.3	559	gCa/gTa																																																																														
CD276	80381	MSKCC	GRCh37	15	73996065	73996065	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747735855		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	202	868	3	ENST00000318443.5:c.799C>T	p.Arg267Cys	p.R267C	ENST00000318443	NM_001024736.1	267	Cgc/Tgc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646215	3646215	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1175366606		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	242	768	1	ENST00000294008.3:c.1863G>T	p.Glu621Asp	p.E621D	ENST00000294008	NM_032444.2	621	gaG/gaT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349508	89349508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143417087		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	258	677	0	ENST00000301030.4:c.3442G>A	p.Gly1148Ser	p.G1148S	ENST00000301030	NM_001256183.1	1148	Ggc/Agc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492830	56492832	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	173	368	0	ENST00000407977.2:c.107_109del	p.Val36del	p.V36del	ENST00000407977		36	gTGGag/gag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533094	63533094	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	201	581	0	ENST00000307078.5:c.1800del	p.Gly601AlafsTer88	p.G601Afs*88	ENST00000307078	NM_004655.3	600	ccC/cc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211124	2211124	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	345	807	0	ENST00000398665.3:c.1378T>G	p.Phe460Val	p.F460V	ENST00000398665	NM_032482.2	460	Ttc/Gtc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349715	15349715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	239	621	0	ENST00000263377.2:c.3859C>G	p.Gln1287Glu	p.Q1287E	ENST00000263377	NM_058243.2	1287	Cag/Gag																																																																														
BARD1	580	MSKCC	GRCh37	2	215632276	215632276	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779468443		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	126	474	0	ENST00000260947.4:c.1498G>A	p.Asp500Asn	p.D500N	ENST00000260947	NM_000465.2	500	Gat/Aat																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660748	227660748	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	278	685	0	ENST00000305123.5:c.2707A>G	p.Ser903Gly	p.S903G	ENST00000305123	NM_005544.2	903	Agt/Ggt																																																																														
MST1	4485	MSKCC	GRCh37	3	49722777	49722777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1381537507		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	13	63	0	ENST00000449682.2:c.1462C>T	p.Arg488Trp	p.R488W	ENST00000449682	NM_020998.3	488	Cgg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637650	52637650	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752454573		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	187	417	0	ENST00000394830.3:c.2666C>T	p.Pro889Leu	p.P889L	ENST00000394830	NM_018313.4	889	cCg/cTg																																																																														
ATR	545	MSKCC	GRCh37	3	142222220	142222220	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	93	389	1	ENST00000350721.4:c.5272G>T	p.Gly1758Ter	p.G1758*	ENST00000350721	NM_001184.3	1758	Gga/Tga																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191229	185191229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	127	444	0	ENST00000265026.3:c.2110G>A	p.Ala704Thr	p.A704T	ENST00000265026	NM_004721.4	704	Gct/Act																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245453	153245453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	68	509	0	ENST00000281708.4:c.1738C>A	p.His580Asn	p.H580N	ENST00000281708	NM_033632.3	580	Cac/Aac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153259052	153259052	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	58	163	0	ENST00000281708.4:c.763G>T	p.Glu255Ter	p.E255*	ENST00000281708	NM_033632.3	255	Gaa/Taa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665360	176665360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	89	353	0	ENST00000439151.2:c.4044G>T	p.Glu1348Asp	p.E1348D	ENST00000439151	NM_022455.4	1348	gaG/gaT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985533	2985533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	156	467	0	ENST00000396946.4:c.278A>G	p.Glu93Gly	p.E93G	ENST00000396946	NM_032415.4	93	gAg/gGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273281	55273281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	221	467	1	ENST00000275493.2:c.3604C>T	p.Pro1202Ser	p.P1202S	ENST00000275493	NM_005228.3	1202	Cca/Tca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012235	152012235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	140	357	0	ENST00000262189.6:c.578G>A	p.Arg193Lys	p.R193K	ENST00000262189	NM_170606.2	193	aGa/aAa																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006158	22006158	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1377452255		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	298	667	0	ENST00000276925.6:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000276925	NM_004936.3	82	cGa/cAa																																																																														
ABL1	25	MSKCC	GRCh37	9	133760343	133760343	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	96	620	0	ENST00000318560.5:c.2666A>T	p.Lys889Met	p.K889M	ENST00000318560	NM_005157.4	889	aAg/aTg																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564638	139564638	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778100938		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	311	866	0	ENST00000308874.7:c.427G>A	p.Ala143Thr	p.A143T	ENST00000308874		143	Gct/Act																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139804439	139804439	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199507094		P-0037867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	257	571	0	ENST00000247668.2:c.596G>T	p.Arg199Leu	p.R199L	ENST00000247668	NM_021138.3	199	cGg/cTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	271	538	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	371	539	1	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112174241	112174241	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	165	450	0	ENST00000257430.4:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000257430	NM_000038.5	984	Gaa/Taa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606096	81606096	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	305	534	0	ENST00000298171.2:c.766A>C	p.Asn256His	p.N256H	ENST00000298171	NM_000369.2	256	Aac/Cac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882995	89882995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	140	137	0	ENST00000389301.3:c.29C>T	p.Ala10Val	p.A10V	ENST00000389301	NM_000135.2	10	gCc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112175760	112175760	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	166	363	0	ENST00000257430.4:c.4469A>C	p.His1490Pro	p.H1490P	ENST00000257430	NM_000038.5	1490	cAt/cCt																																																																														
APC	324	MSKCC	GRCh37	5	112175765	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0037943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	148	352	0	ENST00000257430.4:c.4474_4475delinsT	p.Ala1492SerfsTer15	p.A1492Sfs*15	ENST00000257430	NM_000038.5	1492	GCc/Tc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624294	89624295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	57	528	0	ENST00000371953.3:c.69dup	p.Asp24ArgfsTer20	p.D24Rfs*20	ENST00000371953	NM_000314.4	23	tta/ttAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0038242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	21	467	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs786202962		P-0038242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	88	763	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786201592		P-0039148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	217	625	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201949	102201949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	19	223	0	ENST00000263464.3:c.1301G>T	p.Arg434Ile	p.R434I	ENST00000263464	NM_001165.4	434	aGa/aTa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103498626	103498626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	62	346	0	ENST00000355739.4:c.10C>A	p.Gln4Lys	p.Q4K	ENST00000355739	NM_000123.3	4	Cag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	64	332	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55140704	55140704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765271720		P-0039210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	82	485	0	ENST00000257290.5:c.1565G>A	p.Arg522His	p.R522H	ENST00000257290	NM_006206.4	522	cGt/cAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0039260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	1066	579	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578397	7578397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	144	554	0	ENST00000269305.4:c.533A>C	p.His178Pro	p.H178P	ENST00000269305	NM_001126112.2	178	cAc/cCc																																																																														
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	116	220	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695938	117695938	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142973937		P-0039260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	50	486	3	ENST00000369458.3:c.499C>T	p.Arg167Trp	p.R167W	ENST00000369458	NM_024626.3	167	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708159	117708159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	83	316	0	ENST00000368508.3:c.2018G>A	p.Ser673Asn	p.S673N	ENST00000368508	NM_002944.2	673	aGt/aAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913396		P-0039634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	169	368	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	366	548	1	ENST00000397062.3:c.241G>A	p.Gly81Ser	p.G81S	ENST00000397062	NM_006164.4	81	Ggt/Agt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245318	46245318	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	168	538	0	ENST00000334344.6:c.3416del	p.Gly1139GlufsTer17	p.G1139Efs*17	ENST00000334344	NM_152641.2	1138	Ggg/gg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435982	110435983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	250	973	0	ENST00000375856.3:c.2418dup	p.Pro807AlafsTer67	p.P807Afs*67	ENST00000375856	NM_003749.2	806	-/G																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38953130	38953130	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	52	168	1	ENST00000357387.3:c.2854A>T	p.Ile952Leu	p.I952L	ENST00000357387	NM_152756.3	952	Ata/Tta																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38953177	38953177	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	44	147	0	ENST00000357387.3:c.2807C>G	p.Ser936Ter	p.S936*	ENST00000357387	NM_152756.3	936	tCa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	116	301	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	169	431	0	ENST00000304494.5:c.132C>G	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	169	431	0	ENST00000304494.5:c.132C>G	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578458	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGA			P-0039736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	267	784	0	ENST00000269305.4:c.470_472dup	p.Val157_Arg158insLeu	p.V157_R158insL	ENST00000269305	NM_001126112.2	158	cgc/cTCCgc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286185	66286185	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs865985552		P-0039736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	63	204	0	ENST00000273854.3:c.1501G>C	p.Glu501Gln	p.E501Q	ENST00000273854	NM_004439.5	501	Gag/Cag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0039789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	46	520	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593397	48593397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	30	216	0	ENST00000342988.3:c.1148T>G	p.Ile383Arg	p.I383R	ENST00000342988	NM_005359.5	383	aTa/aGa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484233	8484233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200684369		P-0039789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	33	369	0	ENST00000356435.5:c.3299C>T	p.Thr1100Met	p.T1100M	ENST00000356435		1100	aCg/aTg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207005	1207009	+	frameshift_variant	Frame_Shift_Del	DEL	CACCG	CACCG	-			P-0039789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	46	568	0	ENST00000326873.7:c.93_97del	p.Thr32GlyfsTer129	p.T32Gfs*129	ENST00000326873	NM_000455.4	31	tcCACCGag/tcag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	61	535	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	110	971	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0039817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	53	517	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
AR	367	MSKCC	GRCh37	X	66765159	66765188	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-	rs1222408130		P-0039817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	29	222	0	ENST00000374690.3:c.210_239del	p.Gln71_Gln80del	p.Q71_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923654	72923654	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746242918		P-0039817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	100	830	0	ENST00000268489.5:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000268489	NM_006885.3	1142	Cgc/Tgc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961253	15961253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	89	524	0	ENST00000268712.3:c.6136C>T	p.His2046Tyr	p.H2046Y	ENST00000268712	NM_006311.3	2046	Cat/Tat																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023076	150023076	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs187759014		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	122	740	0	ENST00000253339.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000253339		63	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	78	477	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	123	410	0	ENST00000371953.3:c.801+1G>T		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	50	346	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	247	971	3	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	93	385	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	147	554	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	42	624	1	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	82	501	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369295620		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	268	777	0	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020764	37020764	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	31	551	2	ENST00000358127.4:c.81del	p.Phe27LeufsTer2	p.F27Lfs*2	ENST00000358127	NM_001280556.1	27	ttT/tt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129867	55129867	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373126818		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	142	537	1	ENST00000257290.5:c.401C>T	p.Thr134Met	p.T134M	ENST00000257290	NM_006206.4	134	aCg/aTg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263974	104263974	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	46	239	1	ENST00000369902.3:c.71del	p.Pro24ArgfsTer72	p.P24Rfs*72	ENST00000369902	NM_016169.3	22	gCc/gc																																																																														
FH	2271	MSKCC	GRCh37	1	241667422	241667422	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756990249		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	139	514	0	ENST00000366560.3:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000366560	NM_000143.3	343	cGa/cAa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25497944	25497944	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1203651882		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	437	598	0	ENST00000264709.3:c.505C>T	p.Arg169Trp	p.R169W	ENST00000264709	NM_175629.2	169	Cgg/Tgg																																																																														
MET	4233	MSKCC	GRCh37	7	116435769	116435769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780102059		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	37	656	2	ENST00000397752.3:c.3859G>A	p.Val1287Ile	p.V1287I	ENST00000397752	NM_000245.2	1287	Gta/Ata																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	332	947	4	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	306	990	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
CCND1	595	MSKCC	GRCh37	11	69465976	69465976	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	251	765	0	ENST00000227507.2:c.814G>T	p.Glu272Ter	p.E272*	ENST00000227507	NM_053056.2	272	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097629	27097629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	183	614	0	ENST00000324856.7:c.3218G>A	p.Trp1073Ter	p.W1073*	ENST00000324856	NM_006015.4	1073	tGg/tAg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36938155	36938155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765312095		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	287	865	0	ENST00000361632.4:c.806G>A	p.Arg269His	p.R269H	ENST00000361632		269	cGc/cAc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162748452	162748452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	66	448	0	ENST00000367921.3:c.2366A>G	p.Tyr789Cys	p.Y789C	ENST00000367921	NM_006182.2	789	tAt/tGt																																																																														
PGR	5241	MSKCC	GRCh37	11	100962554	100962554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	161	566	1	ENST00000325455.5:c.1843C>T	p.Arg615Cys	p.R615C	ENST00000325455	NM_001202474.3	615	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444057	49444057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	68	752	0	ENST00000301067.7:c.3314C>T	p.Ala1105Val	p.A1105V	ENST00000301067	NM_003482.3	1105	gCc/gTc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432009	121432009	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	360	1019	0	ENST00000257555.6:c.759del	p.Leu254TrpfsTer88	p.L254Wfs*88	ENST00000257555		252	caG/ca																																																																														
MGA	23269	MSKCC	GRCh37	15	42042488	42042488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	144	692	0	ENST00000219905.7:c.6683G>A	p.Ser2228Asn	p.S2228N	ENST00000219905	NM_001164273.1	2228	aGt/aAt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654720	67654720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	101	426	0	ENST00000264010.4:c.1207G>C	p.Gly403Arg	p.G403R	ENST00000264010	NM_006565.3	403	Ggg/Cgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832074	72832074	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	130	658	0	ENST00000268489.5:c.4507C>T	p.Gln1503Ter	p.Q1503*	ENST00000268489	NM_006885.3	1503	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29559192	29559192	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	143	451	0	ENST00000358273.4:c.3299C>A	p.Ser1100Ter	p.S1100*	ENST00000358273	NM_001042492.2	1100	tCa/tAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448272	56448272	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	257	644	0	ENST00000407977.2:c.375G>C	p.Lys125Asn	p.K125N	ENST00000407977		125	aaG/aaC																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223199	36223199	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	358	1055	0	ENST00000222270.7:c.5749A>G	p.Ser1917Gly	p.S1917G	ENST00000222270	NM_014727.1	1917	Agc/Ggc																																																																														
CIC	23152	MSKCC	GRCh37	19	42798819	42798819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	331	913	1	ENST00000575354.2:c.4391G>A	p.Arg1464Gln	p.R1464Q	ENST00000575354	NM_015125.3	1464	cGg/cAg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128016916	128016916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1192130599		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	430	664	0	ENST00000285398.2:c.2173G>A	p.Glu725Lys	p.E725K	ENST00000285398	NM_000122.1	725	Gag/Aag																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430201	181430201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	190	205	0	ENST00000325404.1:c.53C>T	p.Ser18Leu	p.S18L	ENST00000325404	NM_003106.3	18	tCg/tTg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807132	1807132	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	352	1021	0	ENST00000260795.2:c.1463T>C	p.Met488Thr	p.M488T	ENST00000260795		488	aTg/aCg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38959397	38959397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	44	450	0	ENST00000357387.3:c.2078A>C	p.Asn693Thr	p.N693T	ENST00000357387	NM_152756.3	693	aAc/aCc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131973857	131973857	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876659182		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	125	458	0	ENST00000265335.6:c.3560T>C	p.Val1187Ala	p.V1187A	ENST00000265335		1187	gTg/gCg																																																																														
NPM1	4869	MSKCC	GRCh37	5	170818379	170818379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	54	286	0	ENST00000296930.5:c.209G>C	p.Ser70Thr	p.S70T	ENST00000296930	NM_002520.6	70	aGt/aCt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157495210	157495210	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375023508		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	119	536	0	ENST00000346085.5:c.3094G>A	p.Gly1032Ser	p.G1032S	ENST00000346085	NM_020732.3	1032	Ggc/Agc																																																																														
BRAF	673	MSKCC	GRCh37	7	140434494	140434494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	132	418	0	ENST00000288602.6:c.2204G>T	p.Arg735Leu	p.R735L	ENST00000288602	NM_004333.4	735	cGg/cTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140476779	140476779	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs551111837		P-0039854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	48	514	0	ENST00000288602.6:c.1627A>G	p.Ile543Val	p.I543V	ENST00000288602	NM_004333.4	543	Atc/Gtc																																																																														
RB1	5925	MSKCC	GRCh37	13	48955535	48955535	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	94	329	0	ENST00000267163.4:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000267163	NM_000321.2	551	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579846	7579848	+	frameshift_variant	Frame_Shift_Del	DEL	ATA	ATA	CT			P-0039899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	193	588	1	ENST00000269305.4:c.65_67delinsAG	p.Leu22GlnfsTer22	p.L22Qfs*22	ENST00000269305	NM_001126112.2	22	cTATgg/cAGgg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31449458	31449458	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	107	398	0	ENST00000344624.3:c.2751A>T	p.Leu917Phe	p.L917F	ENST00000344624		917	ttA/ttT																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740424	145740424	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	122	687	0	ENST00000428558.2:c.1516G>T	p.Ala506Ser	p.A506S	ENST00000428558	NM_004260.3	506	Gcc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	96	485	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0039939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	244	776	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281250	15281250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184522923		P-0039939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	247	891	2	ENST00000263388.2:c.5006G>A	p.Arg1669His	p.R1669H	ENST00000263388	NM_000435.2	1669	cGc/cAc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073773	8073774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	42	360	0	ENST00000377482.5:c.885dup	p.Pro296AlafsTer4	p.P296Afs*4	ENST00000377482	NM_018948.3	295	-/G																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974791	21974792	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0039939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	107	233	0	ENST00000304494.5:c.35_36insAG	p.Ala13GlyfsTer14	p.A13Gfs*14	ENST00000304494	NM_000077.4	12	tcg/tcAGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974791	21974792	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0039939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	107	233	0	ENST00000304494.5:c.35_36insAG	p.Ala13GlyfsTer14	p.A13Gfs*14	ENST00000304494	NM_000077.4	12	tcg/tcAGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0040008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	622	808	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1254527	1254527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765787352		P-0040008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	674	994	0	ENST00000310581.5:c.3251G>A	p.Arg1084Gln	p.R1084Q	ENST00000310581	NM_198253.2	1084	cGa/cAa																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18276997	18277019	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCCTTCAATGAGACTATCAA	GAGGCCTTCAATGAGACTATCAA	-			P-0040008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	180	518	1	ENST00000222254.8:c.1446_1468del	p.Glu482AspfsTer3	p.E482Dfs*3	ENST00000222254	NM_005027.3	482	GAGGCCTTCAATGAGACTATCAAg/g																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197842	66197842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	46	255	0	ENST00000273854.3:c.2857T>C	p.Ser953Pro	p.S953P	ENST00000273854	NM_004439.5	953	Tct/Cct																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0040112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	213	227	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108235809	108235809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	173	237	0	ENST00000278616.4:c.8851G>T	p.Val2951Phe	p.V2951F	ENST00000278616	NM_000051.3	2951	Gtc/Ttc																																																																														
ATM	472	MSKCC	GRCh37	11	108098387	108098387	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	55	295	0	ENST00000278616.4:c.37del	p.Arg13ValfsTer3	p.R13Vfs*3	ENST00000278616	NM_000051.3	12	tgC/tg																																																																														
TET2	54790	MSKCC	GRCh37	4	106197471	106197471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	201	292	0	ENST00000380013.4:c.5804A>G	p.Tyr1935Cys	p.Y1935C	ENST00000380013	NM_001127208.2	1935	tAt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	13	358	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	19	411	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0040178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	19	414	0	ENST00000304494.5:c.95_112del	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0040178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	19	414	0	ENST00000304494.5:c.95_112del	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578222	7578225	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0040178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	50	715	1	ENST00000269305.4:c.624_627del	p.Asp208GlufsTer38	p.D208Efs*38	ENST00000269305	NM_001126112.2	208	gaCAGA/ga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519803		P-0040212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	364	896	1	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587782329		P-0040212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	541	864	1	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	201	441	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533556	63533556	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147716924		P-0040241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	319	821	2	ENST00000307078.5:c.1598C>T	p.Ala533Val	p.A533V	ENST00000307078	NM_004655.3	533	gCg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658556		P-0040241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	169	212	0	ENST00000304494.5:c.44G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tGg/tAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658556		P-0040241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	169	212	0	ENST00000304494.5:c.44G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tGg/tAg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820588	44820589	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	59	233	3	ENST00000377967.4:c.289dup	p.Cys97LeufsTer29	p.C97Lfs*29	ENST00000377967	NM_021140.2	95	-/T																																																																														
TP53	7157	MSKCC	GRCh37	17	7578207	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	340	733	0	ENST00000269305.4:c.642del	p.His214GlnfsTer33	p.H214Qfs*33	ENST00000269305	NM_001126112.2	214	caT/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	57	365	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0040294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	147	717	1	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877066	151877066	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	50	483	0	ENST00000262189.6:c.7295del	p.Phe2432SerfsTer20	p.F2432Sfs*20	ENST00000262189	NM_170606.2	2432	tTc/tc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55124952	55124952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754092062		P-0040311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	61	539	0	ENST00000257290.5:c.17C>T	p.Pro6Leu	p.P6L	ENST00000257290	NM_006206.4	6	cCg/cTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76937328	76937329	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	68	306	0	ENST00000373344.5:c.3419dup	p.Leu1140PhefsTer8	p.L1140Ffs*8	ENST00000373344	NM_000489.3	1140	tta/ttTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	19	431	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0040340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	45	709	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0040445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	82	492	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370871	55370871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	128	450	0	ENST00000297316.4:c.173C>T	p.Ala58Val	p.A58V	ENST00000297316	NM_022454.3	58	gCc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	94	263	2	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	98	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	55	384	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658483		P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	153	752	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	19	603	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7573988	7573988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	153	702	0	ENST00000269305.4:c.1039G>C	p.Ala347Pro	p.A347P	ENST00000269305	NM_001126112.2	347	Gcc/Ccc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220134	5220134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115469963		P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	95	547	0	ENST00000357368.4:c.3581G>A	p.Arg1194His	p.R1194H	ENST00000357368	NM_002850.3	1194	cGc/cAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119952	70119953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	107	375	0	ENST00000245479.2:c.955dup	p.Tyr319LeufsTer259	p.Y319Lfs*259	ENST00000245479	NM_000346.3	318	-/T																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5240265	5240265	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	172	785	1	ENST00000357368.4:c.1649A>T	p.Gln550Leu	p.Q550L	ENST00000357368	NM_002850.3	550	cAg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112137069	112137079	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GGTAATGGTCA	GGTAATGGTCA	-			P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	122	341	0	ENST00000257430.4:c.828_834+4del		p.GNGQ275fs	ENST00000257430	NM_000038.5	275	GGTAATGGTCAg/g																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508021	106508021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	40	201	0	ENST00000359195.3:c.15C>A	p.Asn5Lys	p.N5K	ENST00000359195	NM_002649.2	5	aaC/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0040593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	847	886	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
NUF2	83540	MSKCC	GRCh37	1	163298659	163298659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368618280		P-0040593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	73	557	0	ENST00000271452.3:c.299G>A	p.Arg100Gln	p.R100Q	ENST00000271452	NM_145697.2	100	cGg/cAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391201	89391201	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1195505981		P-0040593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	164	485	0	ENST00000336596.2:c.1267A>G	p.Arg423Gly	p.R423G	ENST00000336596	NM_005233.5	423	Aga/Gga																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779199	135779199	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	176	463	0	ENST00000298552.3:c.2047C>G	p.Pro683Ala	p.P683A	ENST00000298552	NM_001162426.1	683	Cct/Gct																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	388	523	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916248	9916248	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397518472		P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	217	373	0	ENST00000330684.3:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000330684	NM_001134407.1	681	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	214	434	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	214	434	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
IL10	3586	MSKCC	GRCh37	1	206941988	206941988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376415487		P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	186	215	1	ENST00000423557.1:c.530G>A	p.Arg177Gln	p.R177Q	ENST00000423557	NM_000572.2	177	cGa/cAa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876235	35876235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866784625		P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	140	452	0	ENST00000303115.3:c.1027G>A	p.Asp343Asn	p.D343N	ENST00000303115	NM_002185.3	343	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485282	8485282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	76	377	0	ENST00000356435.5:c.3098C>T	p.Ser1033Phe	p.S1033F	ENST00000356435		1033	tCc/tTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41536160	41536160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	259	406	1	ENST00000263253.7:c.1777C>T	p.Pro593Ser	p.P593S	ENST00000263253	NM_001429.3	593	Cct/Tct																																																																														
POLE	5426	MSKCC	GRCh37	12	133214630	133214630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	111	429	0	ENST00000320574.5:c.5648C>T	p.Ala1883Val	p.A1883V	ENST00000320574	NM_006231.2	1883	gCc/gTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488718	212488718	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267599191		P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	133	461	0	ENST00000342788.4:c.2131C>T	p.Arg711Cys	p.R711C	ENST00000342788	NM_005235.2	711	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	214	434	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858258	9858258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	86	410	0	ENST00000330684.3:c.3143G>A	p.Ser1048Asn	p.S1048N	ENST00000330684	NM_001134407.1	1048	aGc/aAc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245080	53245080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	150	677	0	ENST00000375401.3:c.860C>T	p.Ser287Leu	p.S287L	ENST00000375401	NM_004187.3	287	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408926	41408926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	97	397	0	ENST00000373198.4:c.500C>T	p.Ser167Phe	p.S167F	ENST00000373198	NM_133170.3	167	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644451	18644451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	85	357	0	ENST00000266497.5:c.2629C>T	p.Pro877Ser	p.P877S	ENST00000266497		877	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002814	69002814	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1213028913		P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	58	208	0	ENST00000288368.4:c.2114G>A	p.Gly705Glu	p.G705E	ENST00000288368	NM_024870.2	705	gGa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	183	345	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41076967	41076967	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	173	413	0	ENST00000373198.4:c.1453C>T	p.Pro485Ser	p.P485S	ENST00000373198	NM_133170.3	485	Cca/Tca																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100286	8100286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1241255776		P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	67	655	0	ENST00000346208.3:c.260C>T	p.Pro87Leu	p.P87L	ENST00000346208		87	cCg/cTg																																																																														
RET	5979	MSKCC	GRCh37	10	43606659	43606659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	146	500	0	ENST00000355710.3:c.1268G>A	p.Gly423Glu	p.G423E	ENST00000355710	NM_020975.4	423	gGg/gAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472493	88472493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	111	584	0	ENST00000360948.2:c.2062G>A	p.Gly688Arg	p.G688R	ENST00000360948	NM_001012338.2	688	Gga/Aga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807816	3807817	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	163	318	0	ENST00000262367.5:c.3602_3603delinsAG	p.Gly1201Glu	p.G1201E	ENST00000262367	NM_004380.2	1201	gGA/gAG																																																																														
CDK12	51755	MSKCC	GRCh37	17	37646892	37646892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	185	674	0	ENST00000447079.4:c.2014C>T	p.Pro672Ser	p.P672S	ENST00000447079	NM_015083.1	672	Cct/Tct																																																																														
CARM1	10498	MSKCC	GRCh37	19	11030613	11030614	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	157	562	0	ENST00000327064.4:c.1167_1168delinsTA	p.Trp390Arg	p.W390R	ENST00000327064	NM_199141.1	389	ttCTgg/ttTAgg																																																																														
AXL	558	MSKCC	GRCh37	19	41745078	41745078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	364	627	0	ENST00000301178.4:c.1144G>A	p.Asp382Asn	p.D382N	ENST00000301178	NM_021913.4	382	Gac/Aac																																																																														
RAF1	5894	MSKCC	GRCh37	3	12650758	12650758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	131	484	0	ENST00000251849.4:c.397C>T	p.His133Tyr	p.H133Y	ENST00000251849	NM_002880.3	133	Cat/Tat																																																																														
ATR	545	MSKCC	GRCh37	3	142272108	142272109	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	145	379	1	ENST00000350721.4:c.2765_2766delinsAT	p.Leu922His	p.L922H	ENST00000350721	NM_001184.3	922	cTG/cAT																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867439	35867439	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	144	345	0	ENST00000303115.3:c.253T>C	p.Phe85Leu	p.F85L	ENST00000303115	NM_002185.3	85	Ttc/Ctc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80024759	80024759	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	80	385	0	ENST00000265081.6:c.1543T>G	p.Leu515Val	p.L515V	ENST00000265081	NM_002439.4	515	Ttg/Gtg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987415	2987416	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	88	425	0	ENST00000396946.4:c.13_14delinsAA	p.Gly5Lys	p.G5K	ENST00000396946	NM_032415.4	5	GGg/AAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020486	69020486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	114	480	0	ENST00000288368.4:c.2858C>T	p.Ser953Phe	p.S953F	ENST00000288368	NM_024870.2	953	tCt/tTt																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915978	127915978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	102	407	0	ENST00000373547.4:c.503C>T	p.Pro168Leu	p.P168L	ENST00000373547	NM_002721.4	168	cCt/cTt																																																																														
AR	367	MSKCC	GRCh37	X	66941743	66941743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	135	580	0	ENST00000374690.3:c.2387G>A	p.Gly796Glu	p.G796E	ENST00000374690	NM_000044.3	796	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0040687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	44	444	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044970	47044970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	68	801	1	ENST00000329236.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000329236	NM_001204466.1	688	Cgc/Tgc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102199656	102199661	+	inframe_deletion	In_Frame_Del	DEL	ATGAAA	ATGAAA	-			P-0040687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	21	336	0	ENST00000263464.3:c.1064_1069del	p.Glu355_Asn356del	p.E355_N356del	ENST00000263464	NM_001165.4	354	gATGAAAat/gat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912532	32912533	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0040687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	40	411	1	ENST00000380152.3:c.4041_4042del	p.Cys1348TyrfsTer3	p.C1348Yfs*3	ENST00000380152		1347	gTT/g																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787833	135787833	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	45	389	1	ENST00000298552.3:c.749T>C	p.Leu250Ser	p.L250S	ENST00000298552	NM_001162426.1	250	tTa/tCa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	53	341	2	ENST00000342505.4:c.2580dup	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676214	37676214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267604833		P-0040742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	117	474	0	ENST00000447079.4:c.2969C>T	p.Pro990Leu	p.P990L	ENST00000447079	NM_015083.1	990	cCt/cTt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593250	67593250	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	38	257	0	ENST00000274335.5:c.1996G>T	p.Glu666Ter	p.E666*	ENST00000274335		666	Gaa/Taa																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197459	26197459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	93	329	0	ENST00000356476.2:c.20C>A	p.Thr7Asn	p.T7N	ENST00000356476		7	aCt/aAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	178	330	0				ENST00000310581	NM_198253.2																																																																																
FAT1	2195	MSKCC	GRCh37	4	187522475	187522476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	160	530	0	ENST00000441802.2:c.11587dup	p.Ser3863PhefsTer13	p.S3863Ffs*13	ENST00000441802	NM_005245.3	3863	tcc/tTcc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589186	67589186	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	133	303	0	ENST00000274335.5:c.1175del	p.Phe392SerfsTer5	p.F392Sfs*5	ENST00000274335		392	Ttc/tc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0040761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	197	716	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	100	388	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0040761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	106	397	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	132	560	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717699	89717699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	150	520	0	ENST00000371953.3:c.724G>T	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	242	Gag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857217	9857217	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199696775		P-0040761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	171	609	3	ENST00000330684.3:c.4184C>T	p.Ala1395Val	p.A1395V	ENST00000330684	NM_001134407.1	1395	gCg/gTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717696	89717698	+	frameshift_variant	Frame_Shift_Del	DEL	TTT	TTT	G			P-0040761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	155	514	0	ENST00000371953.3:c.721_723delinsG	p.Phe241GlyfsTer11	p.F241Gfs*11	ENST00000371953	NM_000314.4	241	TTT/G																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832031	72832031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144091993		P-0040786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	385	616	0	ENST00000268489.5:c.4550C>T	p.Ser1517Leu	p.S1517L	ENST00000268489	NM_006885.3	1517	tCg/tTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779578	3779578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	638	1044	4	ENST00000262367.5:c.5470G>A	p.Ala1824Thr	p.A1824T	ENST00000262367	NM_004380.2	1824	Gcc/Acc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946340	71946340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	170	802	1	ENST00000298229.2:c.2504G>T	p.Gly835Val	p.G835V	ENST00000298229	NM_001567.3	835	gGg/gTg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61722669	61722670	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	215	372	2	ENST00000401558.2:c.967dup	p.Ser323LysfsTer9	p.S323Kfs*9	ENST00000401558	NM_003400.3	323	agt/aAgt																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62319690	62319692	+	inframe_deletion,NMD_transcript_variant	In_Frame_Del	DEL	TCT	TCT	-	rs779176651		P-0040786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	171	887	0	ENST00000482936.1:c.1678_1680del	p.Phe560del	p.F560del	ENST00000482936		558	aTCTtc/atc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0040831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	17	425	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0040831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	49	717	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0040831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	14	261	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0040831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	21	398	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88677066	88677066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	32	591	0	ENST00000372037.3:c.851G>A	p.Arg284His	p.R284H	ENST00000372037	NM_004329.2	284	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0040845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	204	398	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106366	27106366	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	278	572	0	ENST00000324856.7:c.5979del	p.Phe1993LeufsTer22	p.F1993Lfs*22	ENST00000324856	NM_006015.4	1993	Ttt/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578368	7578369	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0040845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	298	590	0	ENST00000269305.4:c.559+2dup		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	53	402	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	35	289	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46736432	46736432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764014400		P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	39	526	1	ENST00000371975.4:c.1144C>T	p.Arg382Trp	p.R382W	ENST00000371975	NM_003579.3	382	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108139307	108139307	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	44	575	0	ENST00000278616.4:c.2809G>T	p.Glu937Ter	p.E937*	ENST00000278616	NM_000051.3	937	Gaa/Taa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37673781	37673781	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	56	540	0	ENST00000447079.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000447079	NM_015083.1	979	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243460	41243460	+	stop_gained	Nonsense_Mutation	SNP	G	G	C	rs398122680		P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	42	567	0	ENST00000357654.3:c.4088C>G	p.Ser1363Ter	p.S1363*	ENST00000357654	NM_007294.3	1363	tCa/tGa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25978980	25978989	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAACCTGGGT	CAACCTGGGT	-			P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	30	372	0	ENST00000435504.4:c.940-6_943del		p.X314_splice	ENST00000435504		314																																																																															
APC	324	MSKCC	GRCh37	5	112175206	112175206	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	30	198	0	ENST00000257430.4:c.3915del	p.Glu1306LysfsTer2	p.E1306Kfs*2	ENST00000257430	NM_000038.5	1305	gcA/gc																																																																														
NPM1	4869	MSKCC	GRCh37	5	170818365	170818365	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	44	342	0	ENST00000296930.5:c.195G>C	p.Met65Ile	p.M65I	ENST00000296930	NM_002520.6	65	atG/atC																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591247	67591249	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGT	GGT	-			P-0040858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	28	375	0	ENST00000274335.5:c.1748_1750del		p.X583_splice	ENST00000274335		583																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591043	67591043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	16	225	0	ENST00000274335.5:c.1636G>T	p.Glu546Ter	p.E546*	ENST00000274335		546	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	181	836	0	ENST00000269305.4:c.848del	p.Arg283ProfsTer62	p.R283Pfs*62	ENST00000269305	NM_001126112.2	283	cGc/cc																																																																														
MPL	4352	MSKCC	GRCh37	1	43812301	43812301	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0040858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	88	521	0	ENST00000372470.3:c.1165+1G>T		p.X389_splice	ENST00000372470	NM_005373.2	389																																																																															
CDK4	1019	MSKCC	GRCh37	12	58144548	58144548	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	28	288	0	ENST00000257904.6:c.523G>T	p.Val175Phe	p.V175F	ENST00000257904	NM_000075.3	175	Gtt/Ttt																																																																														
POLE	5426	MSKCC	GRCh37	12	133263866	133263866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	80	203	0	ENST00000320574.5:c.36C>A	p.Asp12Glu	p.D12E	ENST00000320574	NM_006231.2	12	gaC/gaA																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740738	58740738	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	129	569	0	ENST00000305921.3:c.1643A>C	p.Lys548Thr	p.K548T	ENST00000305921	NM_003620.3	548	aAg/aCg																																																																														
ATR	545	MSKCC	GRCh37	3	142274791	142274791	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	17	417	0	ENST00000350721.4:c.2269C>G	p.Gln757Glu	p.Q757E	ENST00000350721	NM_001184.3	757	Caa/Gaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105541	27105541	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	22	413	0	ENST00000324856.7:c.5152G>T	p.Glu1718Ter	p.E1718*	ENST00000324856	NM_006015.4	1718	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	67	188	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs775126020		P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	104	348	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579317	7579317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	230	445	0	ENST00000269305.4:c.370T>C	p.Cys124Arg	p.C124R	ENST00000269305	NM_001126112.2	124	Tgc/Cgc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162680	47162680	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757222335		P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	172	297	0	ENST00000409792.3:c.3446G>A	p.Ser1149Asn	p.S1149N	ENST00000409792	NM_014159.6	1149	aGt/aAt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926897	112926897	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397507548		P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	146	358	0	ENST00000351677.2:c.1517A>C	p.Gln506Pro	p.Q506P	ENST00000351677	NM_002834.3	506	cAg/cCg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251653	212251653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	35	358	0	ENST00000342788.4:c.3406G>A	p.Ala1136Thr	p.A1136T	ENST00000342788	NM_005235.2	1136	Gcc/Acc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143326445	143326445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	73	287	0	ENST00000262992.4:c.169C>T	p.Arg57Cys	p.R57C	ENST00000262992	NM_001101669.1	57	Cgt/Tgt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0040915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	101	422	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25468141	25468141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	102	634	0	ENST00000264709.3:c.1535G>A	p.Gly512Glu	p.G512E	ENST00000264709	NM_175629.2	512	gGa/gAa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139407859	139407859	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756642176		P-0040915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	28	517	0	ENST00000277541.6:c.2338C>T	p.Arg780Trp	p.R780W	ENST00000277541	NM_017617.3	780	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0041067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	233	557	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912664		P-0041067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	403	830	0	ENST00000269305.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000269305	NM_001126112.2	337	cGc/cAc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841123	15841124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	122	740	0	ENST00000307771.7:c.1212dup	p.Lys405GlufsTer23	p.K405Efs*23	ENST00000307771	NM_005089.3	403	agg/aGgg																																																																														
MGA	23269	MSKCC	GRCh37	15	41999970	41999970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	105	726	0	ENST00000219905.7:c.2233C>T	p.Leu745Phe	p.L745F	ENST00000219905	NM_001164273.1	745	Ctt/Ttt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630061	47630333	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	AAGGATGCGCGTCTGCGGGTTTCCGCGCGACCTAGGCGCAGGCATGCGCAGTAGCTAAAGTCACCAGCGTGCGCGGGAAGCTGGGCCGCGTCTGCTTATGATTGGTTGCCGCGGCAGACTCCCACCCACCGAAACGCAGCCCTGGAAGCTGATTGGGTGTGGTCGCCGTGGCCGGACGCCGCTCGGGGGACGTGGGAGGGGAGGCGGGAAACAGCTTAGTGGGTGTGGGGTCGCGCATTTTCTTCAACCAGGAGGTGAGGAGGTTTCGACATG	AAGGATGCGCGTCTGCGGGTTTCCGCGCGACCTAGGCGCAGGCATGCGCAGTAGCTAAAGTCACCAGCGTGCGCGGGAAGCTGGGCCGCGTCTGCTTATGATTGGTTGCCGCGGCAGACTCCCACCCACCGAAACGCAGCCCTGGAAGCTGATTGGGTGTGGTCGCCGTGGCCGGACGCCGCTCGGGGGACGTGGGAGGGGAGGCGGGAAACAGCTTAGTGGGTGTGGGGTCGCGCATTTTCTTCAACCAGGAGGTGAGGAGGTTTCGACATG	-			P-0041067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	97	37	0				ENST00000233146	NM_000251.2			1/16																																																																													
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	73	519	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27057988	27057988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	130	805	0	ENST00000324856.7:c.1696C>T	p.Gln566Ter	p.Q566*	ENST00000324856	NM_006015.4	566	Cag/Tag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918622	44918622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	163	309	0	ENST00000377967.4:c.1105C>T	p.Gln369Ter	p.Q369*	ENST00000377967	NM_021140.2	369	Cag/Tag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65305328	65305328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	156	702	0	ENST00000342505.4:c.2800C>T	p.His934Tyr	p.H934Y	ENST00000342505	NM_002227.2	934	Cat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112136980	112136980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	95	442	0	ENST00000257430.4:c.734C>T	p.Ser245Leu	p.S245L	ENST00000257430	NM_000038.5	245	tCa/tTa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434665	110434665	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868494628		P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	94	1071	2	ENST00000375856.3:c.3736G>A	p.Gly1246Ser	p.G1246S	ENST00000375856	NM_003749.2	1246	Ggc/Agc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16265218	16265218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	95	534	0	ENST00000375759.3:c.10710G>C	p.Glu3570Asp	p.E3570D	ENST00000375759	NM_015001.2	3570	gaG/gaC																																																																														
NUF2	83540	MSKCC	GRCh37	1	163325176	163325176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	39	436	0	ENST00000271452.3:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000271452	NM_145697.2	438	Gaa/Aaa																																																																														
YAP1	10413	MSKCC	GRCh37	11	102100466	102100466	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	88	647	0	ENST00000282441.5:c.1310A>T	p.Gln437Leu	p.Q437L	ENST00000282441	NM_001130145.2	437	cAg/cTg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061761	38061762	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGGC			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	65	968	0	ENST00000250448.2:c.223_227dup	p.Leu77ProfsTer3	p.L77Pfs*3	ENST00000250448	NM_004496.3	76	ggc/ggGCCGGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830178	72830178	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	128	796	1	ENST00000268489.5:c.6403C>T	p.Gln2135Ter	p.Q2135*	ENST00000268489	NM_006885.3	2135	Cag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1223161	1223163	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	68	870	0	ENST00000326873.7:c.1098_1100del	p.Phe366_Thr367delinsLeu	p.F366_T367delinsL	ENST00000326873	NM_000455.4	366	ttCACg/ttg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265476	198265476	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	131	569	0	ENST00000335508.6:c.2681A>G	p.Asp894Gly	p.D894G	ENST00000335508	NM_012433.2	894	gAt/gGt																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321130	62321130	+	stop_gained,NMD_transcript_variant	Nonsense_Mutation	SNP	C	C	T			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	109	1196	2	ENST00000482936.1:c.2053C>T	p.Gln685Ter	p.Q685*	ENST00000482936		685	Cag/Tag																																																																														
ATR	545	MSKCC	GRCh37	3	142257453	142257453	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	141	442	0	ENST00000350721.4:c.3596T>G	p.Phe1199Cys	p.F1199C	ENST00000350721	NM_001184.3	1199	tTt/tGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55599318	55599318	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	46	557	0	ENST00000288135.5:c.2444G>C	p.Arg815Thr	p.R815T	ENST00000288135	NM_000222.2	815	aGa/aCa																																																																														
APC	324	MSKCC	GRCh37	5	112137036	112137036	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1434813233		P-0041104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	123	538	0	ENST00000257430.4:c.790C>G	p.Gln264Glu	p.Q264E	ENST00000257430	NM_000038.5	264	Caa/Gaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098615	47098615	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	307	557	0	ENST00000409792.3:c.6659del	p.Pro2220LeufsTer28	p.P2220Lfs*28	ENST00000409792	NM_014159.6	2220	cCt/ct																																																																														
RAD50	10111	MSKCC	GRCh37	5	131976480	131976481	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	263	456	0	ENST00000265335.6:c.3736dup	p.Ala1246GlyfsTer6	p.A1246Gfs*6	ENST00000265335		1245	-/G																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	56	431	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0041216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	227	647	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0041216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	368	445	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0041216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	368	445	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0041216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	368	445	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492796	56492796	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	162	524	0	ENST00000407977.2:c.143T>C	p.Ile48Thr	p.I48T	ENST00000407977		48	aTc/aCc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593515	48593517	+	frameshift_variant	Frame_Shift_Del	DEL	TGG	TGG	C			P-0041216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	52	363	0	ENST00000342988.3:c.1266_1268delinsC	p.Gly423ArgfsTer5	p.G423Rfs*5	ENST00000342988	NM_005359.5	422	ccTGGa/ccCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0041236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	2674	615	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78432382	78432382	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1284370233		P-0041236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	44	364	0	ENST00000370768.2:c.469G>C	p.Val157Leu	p.V157L	ENST00000370768	NM_003902.3	157	Gtc/Ctc																																																																														
APC	324	MSKCC	GRCh37	5	112179431	112179432	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	111	502	0	ENST00000257430.4:c.8140_8141insA	p.Arg2714GlnfsTer19	p.R2714Qfs*19	ENST00000257430	NM_000038.5	2714	cgt/cAgt																																																																														
CCND2	894	MSKCC	GRCh37	12	4385216	4385216	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	90	570	1	ENST00000261254.3:c.241A>C	p.Met81Leu	p.M81L	ENST00000261254	NM_001759.3	81	Atg/Ctg																																																																														
INHA	3623	MSKCC	GRCh37	2	220437349	220437349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	101	805	0	ENST00000243786.2:c.253C>G	p.Leu85Val	p.L85V	ENST00000243786	NM_002191.3	85	Ctt/Gtt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043401	180043401	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	117	734	0	ENST00000261937.6:c.3185T>G	p.Ile1062Ser	p.I1062S	ENST00000261937	NM_182925.4	1062	aTc/aGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242514	55242514	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs397517104		P-0041279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	54	397	0	ENST00000275493.2:c.2283+1G>A		p.X761_splice	ENST00000275493	NM_005228.3	761																																																																															
RYBP	23429	MSKCC	GRCh37	3	72495726	72495726	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	37	387	0	ENST00000477973.2:c.344T>G	p.Cys116Gly	p.C116G	ENST00000477973	NM_012234.5	116	Tgt/Ggt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0041329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	110	344	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0041329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	285	567	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447419	49447419	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	410	896	0	ENST00000301067.7:c.679del	p.Ala227LeufsTer34	p.A227Lfs*34	ENST00000301067	NM_003482.3	227	Gct/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519977		P-0041359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	501	1321	1	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796926	78796936	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCGAAATTT	TTTCGAAATTT	A			P-0041359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	88	720	0	ENST00000306801.3:c.1039_1049delinsA	p.Phe347IlefsTer8	p.F347Ifs*8	ENST00000306801	NM_020761.2	347	TTTCGAAATTTt/At																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19261496	19261496	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763146191		P-0041359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	130	937	0	ENST00000162023.5:c.49C>T	p.Arg17Trp	p.R17W	ENST00000162023		17	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	70	471	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0041359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	159	443	0				ENST00000310581	NM_198253.2																																																																																
MET	4233	MSKCC	GRCh37	7	116371864	116371864	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750256779		P-0041359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	261	551	0	ENST00000397752.3:c.1343G>A	p.Gly448Glu	p.G448E	ENST00000397752	NM_000245.2	448	gGa/gAa																																																																														
MET	4233	MSKCC	GRCh37	7	116414783	116414783	+	intron_variant	Intron	SNP	C	C	G			P-0041359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	158	351	0	ENST00000397752.3:c.3029-152C>G		p.*1010*	ENST00000397752	NM_000245.2																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8500790	8500790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	85	600	1	ENST00000356435.5:c.2092G>A	p.Glu698Lys	p.E698K	ENST00000356435		698	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400155	139400155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	108	1221	0	ENST00000277541.6:c.4193A>G	p.Tyr1398Cys	p.Y1398C	ENST00000277541	NM_017617.3	1398	tAc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	282	264	0				ENST00000310581	NM_198253.2																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139402765	139402765	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1386494518		P-0041365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1409	380	883	0	ENST00000277541.6:c.3244C>T	p.Arg1082Cys	p.R1082C	ENST00000277541	NM_017617.3	1082	Cgc/Tgc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651879	36651879	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0041365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	519	602	0	ENST00000244741.5:c.1A>G	p.Met1?	p.M1?	ENST00000244741	NM_000389.4	1	Atg/Gtg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131977883	131977883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561655417		P-0041365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	138	355	0	ENST00000265335.6:c.3766C>T	p.Arg1256Cys	p.R1256C	ENST00000265335		1256	Cgc/Tgc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201854	67201854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	278	688	0	ENST00000312629.5:c.1054G>C	p.Glu352Gln	p.E352Q	ENST00000312629	NM_003952.2	352	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587782272		P-0041365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	1103	659	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	580	640	0	ENST00000267101.3:c.1166C>T	p.Thr389Ile	p.T389I	ENST00000267101	NM_001982.3	389	aCa/aTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342518	118342518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	127	278	0	ENST00000534358.1:c.644C>G	p.Ser215Cys	p.S215C	ENST00000534358	NM_005933.3	215	tCt/tGt																																																																														
RB1	5925	MSKCC	GRCh37	13	48878077	48878114	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCACCGCCGCCGCTGCCGCCGCGGAACCCCCGGCA	CCGCCACCGCCGCCGCTGCCGCCGCGGAACCCCCGGCA	-			P-0041365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	580	123	0	ENST00000267163.4:c.34_71del	p.Thr12AlafsTer6	p.T12Afs*6	ENST00000267163	NM_000321.2	10	gCCGCCACCGCCGCCGCTGCCGCCGCGGAACCCCCGGCA/g																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266691	18266692	+	frameshift_variant,start_lost	Frame_Shift_Ins	INS	-	-	GGCG			P-0041365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	263	645	0	ENST00000222254.8:c.6_9dup	p.Pro4GlyfsTer3	p.P4Gfs*3	ENST00000222254	NM_005027.3	1	atg/atGGCGg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515327	149515327	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	187	669	0	ENST00000261799.4:c.155T>A	p.Leu52Gln	p.L52Q	ENST00000261799	NM_002609.3	52	cTg/cAg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878869	117878869	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	133	422	0	ENST00000297338.2:c.100G>C	p.Glu34Gln	p.E34Q	ENST00000297338	NM_006265.2	34	Gag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	12	493	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0041413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	505	703	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729642	162729683	+	inframe_deletion	In_Frame_Del	DEL	CCCAGACCCATGAATACCACGTGTGGCCCGGCTATGACTATG	CCCAGACCCATGAATACCACGTGTGGCCCGGCTATGACTATG	-			P-0041413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	128	607	0	ENST00000367921.3:c.728_769del	p.Thr243_Val257delinsMet	p.T243_V257delinsM	ENST00000367921	NM_006182.2	243	aCCCAGACCCATGAATACCACGTGTGGCCCGGCTATGACTATGtg/atg																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68758694	68758694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	72	221	0	ENST00000487270.1:c.850G>A	p.Glu284Lys	p.E284K	ENST00000487270	NM_133509.3	284	Gaa/Aaa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905470	50905470	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	231	872	0	ENST00000440232.2:c.598G>C	p.Gly200Arg	p.G200R	ENST00000440232	NM_002691.3	200	Ggg/Cgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944487	40944487	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	57	577	0	ENST00000373198.4:c.2015A>T	p.Asn672Ile	p.N672I	ENST00000373198	NM_133170.3	672	aAc/aTc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37048520	37048520	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	55	422	0	ENST00000231790.2:c.419A>C	p.Lys140Thr	p.K140T	ENST00000231790	NM_000249.3	140	aAa/aCa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275166	41275179	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGGCTCTTGTGC	AGAGGCTCTTGTGC	GGCTCTT			P-0041413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	40	403	2	ENST00000349496.5:c.1332_1345delinsGGCTCTT	p.Ile444MetfsTer26	p.I444Mfs*26	ENST00000349496	NM_001904.3	444	atAGAGGCTCTTGTGCgt/atGGCTCTTgt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32189099	32189100	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	TC	TC	CT			P-0041413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	342	435	0	ENST00000375023.3:c.454_455delinsAG	p.Glu152Arg	p.E152R	ENST00000375023	NM_004557.3	152	GAg/AGg																																																																														
PIM1	5292	MSKCC	GRCh37	6	37141709	37141709	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0041413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	321	406	0	ENST00000373509.5:c.785-1G>A		p.X262_splice	ENST00000373509	NM_002648.3	262																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549392	5549392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	68	603	0	ENST00000397747.3:c.419A>G	p.Glu140Gly	p.E140G	ENST00000397747	NM_025239.3	140	gAg/gGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717715	89717716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1393832338		P-0041474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	89	429	0	ENST00000371953.3:c.741dup	p.Pro248ThrfsTer5	p.P248Tfs*5	ENST00000371953	NM_000314.4	247	tta/ttAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591135	67591137	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0041474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	36	320	0	ENST00000274335.5:c.1728_1730del	p.Arg577del	p.R577del	ENST00000274335		576	acGAGa/aca																																																																														
ATM	472	MSKCC	GRCh37	11	108142134	108142134	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs192810283		P-0041474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	50	240	0	ENST00000278616.4:c.3077+1G>A		p.X1026_splice	ENST00000278616	NM_000051.3	1026																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	79	394	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	186	349	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	158	235	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs121913418		P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	23	315	0	ENST00000275493.2:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000275493	NM_005228.3	761	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579514	7579514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	335	599	0	ENST00000269305.4:c.173del	p.Pro58GlnfsTer65	p.P58Qfs*65	ENST00000269305	NM_001126112.2	58	cCa/ca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247280	153247280	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	223	362	0	ENST00000281708.4:c.1522C>T	p.Gln508Ter	p.Q508*	ENST00000281708	NM_033632.3	508	Caa/Taa																																																																														
ETV6	2120	MSKCC	GRCh37	12	12006417	12006418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	133	464	0	ENST00000396373.4:c.391dup	p.Ser131PhefsTer23	p.S131Ffs*23	ENST00000396373	NM_001987.4	129	ctt/cTtt																																																																														
ATR	545	MSKCC	GRCh37	3	142232354	142232361	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCTTGA	CTTCTTGA	-			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	84	359	0	ENST00000350721.4:c.4623_4630del	p.Asn1541LysfsTer16	p.N1541Kfs*16	ENST00000350721	NM_001184.3	1541	aaTCAAGAAGat/aaat																																																																														
RAD21	5885	MSKCC	GRCh37	8	117866613	117866613	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	42	492	0	ENST00000297338.2:c.1032T>A	p.Tyr344Ter	p.Y344*	ENST00000297338	NM_006265.2	344	taT/taA																																																																														
AGO2	27161	MSKCC	GRCh37	8	141551454	141551454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	120	441	0	ENST00000220592.5:c.1843G>A	p.Val615Met	p.V615M	ENST00000220592	NM_012154.3	615	Gtg/Atg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0041483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	133	476	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	162	554	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212522509	212522509	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs532377012		P-0041483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	90	474	1	ENST00000342788.4:c.1916C>T	p.Thr639Met	p.T639M	ENST00000342788	NM_005235.2	639	aCg/aTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68842746	68842746	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	146	471	0	ENST00000261769.5:c.682T>A	p.Tyr228Asn	p.Y228N	ENST00000261769	NM_004360.3	228	Tac/Aac																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936097	49936102	+	inframe_deletion	In_Frame_Del	DEL	GGCCTT	GGCCTT	-			P-0041483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	134	690	0	ENST00000296474.3:c.1568_1573del	p.Gln523_Gly524del	p.Q523_G524del	ENST00000296474	NM_002447.2	523	cAAGGCCct/cct																																																																														
SMO	6608	MSKCC	GRCh37	7	128845583	128845583	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764495218		P-0041483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	158	613	0	ENST00000249373.3:c.880G>A	p.Val294Ile	p.V294I	ENST00000249373	NM_005631.4	294	Gtc/Atc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0041514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	124	690	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780070		P-0041514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	143	807	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0041514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	208	557	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
AXL	558	MSKCC	GRCh37	19	41763458	41763458	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372169583		P-0041514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	160	748	0	ENST00000301178.4:c.2257G>A	p.Val753Met	p.V753M	ENST00000301178	NM_021913.4	753	Gtg/Atg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs371769427		P-0041514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	60	347	1	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057848	27057848	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	93	878	1	ENST00000324856.7:c.1558del	p.Gln520SerfsTer99	p.Q520Sfs*99	ENST00000324856	NM_006015.4	519	tCc/tc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487584	56487584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	328	686	0	ENST00000267101.3:c.1517C>T	p.Ser506Phe	p.S506F	ENST00000267101	NM_001982.3	506	tCt/tTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022940	27022942	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-	rs748085214		P-0041520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	10	34	0	ENST00000324856.7:c.60_62del	p.Pro21del	p.P21del	ENST00000324856	NM_006015.4	16	CCG/-																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	62	494	0	ENST00000371953.3:c.395G>C	p.Gly132Ala	p.G132A	ENST00000371953	NM_000314.4	132	gGt/gCt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513223	44513223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	58	265	1	ENST00000291552.4:c.712G>A	p.Gly238Arg	p.G238R	ENST00000291552	NM_006758.2	238	Ggg/Agg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692964	89692964	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs786204934		P-0041520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	71	560	0	ENST00000371953.3:c.448G>T	p.Glu150Ter	p.E150*	ENST00000371953	NM_000314.4	150	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024006	27024019	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAGCCGCTCGCC	GGCAGCCGCTCGCC	-			P-0041520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	26	104	0	ENST00000324856.7:c.1112_1125del	p.Gly371AlafsTer24	p.G371Afs*24	ENST00000324856	NM_006015.4	371	gGGCAGCCGCTCGCC/g																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719754	190719754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs566975683		P-0041520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	31	251	1	ENST00000441310.2:c.1756C>T	p.Arg586Cys	p.R586C	ENST00000441310	NM_000534.4	586	Cgt/Tgt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591084	67591085	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACAAACGTATGAACAGCATTAAACCAGAC			P-0041520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	33	305	0	ENST00000274335.5:c.1678_1707dup	p.Asp560_Asp569dup	p.D560_D569dup	ENST00000274335		560	-/GACAAACGTATGAACAGCATTAAACCAGAC																																																																														
FYN	2534	MSKCC	GRCh37	6	112035605	112035605	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	36	412	0	ENST00000368678.4:c.289A>G	p.Thr97Ala	p.T97A	ENST00000368678		97	Aca/Gca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98212185	98212185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	43	377	0	ENST00000331920.6:c.3487G>C	p.Gly1163Arg	p.G1163R	ENST00000331920	NM_000264.3	1163	Ggc/Cgc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128420078	128420078	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0041520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	65	483	0	ENST00000265960.3:c.350C>G	p.Ala117Gly	p.A117G	ENST00000265960	NM_001006617.1	117	gCc/gGc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240838	53240838	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0041520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	27	443	0	ENST00000375401.3:c.1243-1G>A		p.X415_splice	ENST00000375401	NM_004187.3	415																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	187	506	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1293552	1293552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	413	835	0	ENST00000310581.5:c.1449C>G	p.Asn483Lys	p.N483K	ENST00000310581	NM_198253.2	483	aaC/aaG																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484298	8484298	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs7869444		P-0041526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	275	491	0	ENST00000356435.5:c.3234G>T	p.Glu1078Asp	p.E1078D	ENST00000356435		1078	gaG/gaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710615	117710615	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs748189554		P-0041526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	193	391	0	ENST00000368508.3:c.1657C>A	p.Gln553Lys	p.Q553K	ENST00000368508	NM_002944.2	553	Cag/Aag																																																																														
SESN2	83667	MSKCC	GRCh37	1	28600653	28600653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	304	634	0	ENST00000253063.3:c.1004C>T	p.Pro335Leu	p.P335L	ENST00000253063	NM_031459.4	335	cCt/cTt																																																																														
PGR	5241	MSKCC	GRCh37	11	100999567	100999567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	423	870	0	ENST00000325455.5:c.235T>C	p.Ser79Pro	p.S79P	ENST00000325455	NM_001202474.3	79	Tcg/Ccg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	472146	472194	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTTCTCTTCGGCAGAATGTTCATCCTTGTGCCTGGCTCTGGGGAAGT	TTGTTCTCTTCGGCAGAATGTTCATCCTTGTGCCTGGCTCTGGGGAAGT	-			P-0041526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	85	503	0	ENST00000399788.2:c.607_655del	p.Thr203AspfsTer3	p.T203Dfs*3	ENST00000399788	NM_001042603.1	203	ACTTCCCCAGAGCCAGGCACAAGGATGAACATTCTGCCGAAGAGAACAAga/ga																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912484	50912485	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	270	707	1	ENST00000440232.2:c.1998_1999delinsTT	p.Arg667Trp	p.R667W	ENST00000440232	NM_002691.3	666	gcCCgg/gcTTgg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39742758	39742758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	221	516	2	ENST00000361337.2:c.1601C>T	p.Ser534Phe	p.S534F	ENST00000361337	NM_003286.2	534	tCc/tTc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31483681	31483681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	130	299	0	ENST00000344624.3:c.2051G>A	p.Arg684His	p.R684H	ENST00000344624		684	cGt/cAt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288599	33288599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	224	507	0	ENST00000374542.5:c.953G>A	p.Arg318Gln	p.R318Q	ENST00000374542	NM_001141970.1	318	cGa/cAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955133	93955133	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	253	517	0	ENST00000369303.4:c.2765T>C	p.Phe922Ser	p.F922S	ENST00000369303	NM_004440.3	922	tTc/tCc																																																																														
SETD8	0	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0041539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	17	90	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																														
NF2	4771	MSKCC	GRCh37	22	30032739	30032739	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0041556-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	102	284	0	ENST00000338641.4:c.115-1G>A		p.X39_splice	ENST00000338641	NM_000268.3	39																																																																															
CDH1	999	MSKCC	GRCh37	16	68867305	68867305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041556-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			638	239	499	0	ENST00000261769.5:c.2552C>T	p.Ser851Leu	p.S851L	ENST00000261769	NM_004360.3	851	tCa/tTa																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041556-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	28	320	0	ENST00000257430.4:c.904C>G	p.Arg302Gly	p.R302G	ENST00000257430	NM_000038.5	302	Cga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578520	7578521	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	C			P-0041556-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			843	383	793	0	ENST00000269305.4:c.409_410delinsG	p.Leu137GlyfsTer33	p.L137Gfs*33	ENST00000269305	NM_001126112.2	137	CTg/Gg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913492		P-0041571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	216	508	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156739	20156741	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	ONP	ACC	ACC	TTT			P-0041571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	120	328	0	ENST00000379607.5:c.17-1_18delinsAAA		p.X6_splice	ENST00000379607	NM_001412.3	6																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	74	312	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0041585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	61	405	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886039551		P-0041585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	48	255	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751553	57751553	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1463906111		P-0041585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	71	249	0	ENST00000274289.3:c.1438C>T	p.Arg480Trp	p.R480W	ENST00000274289	NM_006622.3	480	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	297	718	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
FAM175A	0	MSKCC	GRCh37	4	84383999	84383999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150371881		P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	110	404	0	ENST00000321945.7:c.853C>T	p.Arg285Trp	p.R285W	ENST00000321945	NM_139076.2	285	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	46	164	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs771193709		P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	311	367	13	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																														
FYN	2534	MSKCC	GRCh37	6	112041022	112041022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376255649		P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	110	328	0	ENST00000368678.4:c.233C>T	p.Thr78Met	p.T78M	ENST00000368678		78	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106108	27106108	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	145	447	0	ENST00000324856.7:c.5719del	p.Ile1907SerfsTer16	p.I1907Sfs*16	ENST00000324856	NM_006015.4	1907	Atc/tc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114917829	114917829	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	202	467	0	ENST00000543371.1:c.1318+1G>C		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																															
SOS1	6654	MSKCC	GRCh37	2	39216449	39216449	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	119	329	0	ENST00000402219.2:c.3353A>G	p.Asp1118Gly	p.D1118G	ENST00000402219	NM_005633.3	1118	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112173263	112173263	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	48	131	0	ENST00000257430.4:c.1972G>T	p.Glu658Ter	p.E658*	ENST00000257430	NM_000038.5	658	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0041621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	409	578	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724406	117724406	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	161	566	0	ENST00000368508.3:c.473T>C	p.Leu158Pro	p.L158P	ENST00000368508	NM_002944.2	158	cTg/cCg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651327	52651327	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	305	518	0	ENST00000394830.3:c.1769T>A	p.Met590Lys	p.M590K	ENST00000394830	NM_018313.4	590	aTg/aAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950244	38950244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	150	491	0	ENST00000357387.3:c.3706C>G	p.Pro1236Ala	p.P1236A	ENST00000357387	NM_152756.3	1236	Cct/Gct																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	181	620	0	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41537184	41537184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	128	557	0	ENST00000263253.7:c.2011C>T	p.Pro671Ser	p.P671S	ENST00000263253	NM_001429.3	671	Cca/Tca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	197	760	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606150	81606150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373712078		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	94	485	1	ENST00000298171.2:c.820C>T	p.Arg274Trp	p.R274W	ENST00000298171	NM_000369.2	274	Cgg/Tgg																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	58	124	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	112	503	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	223	840	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372022	55372022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	180	645	3	ENST00000297316.4:c.712G>A	p.Ala238Thr	p.A238T	ENST00000297316	NM_022454.3	238	Gcc/Acc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	205	975	0	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	77	805	6	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	174	755	1	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80343580	80343580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	68	114	0	ENST00000286548.4:c.739C>T	p.Arg247Ter	p.R247*	ENST00000286548	NM_002072.3	247	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	230	784	6	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	238	933	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	227	852	2	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534801	18534801	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759595930		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	103	417	0	ENST00000266497.5:c.1859C>T	p.Pro620Leu	p.P620L	ENST00000266497		620	cCg/cTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106193849	106193850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs777908833		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	82	296	0	ENST00000380013.4:c.4317dup	p.Arg1440ThrfsTer38	p.R1440Tfs*38	ENST00000380013	NM_001127208.2	1437	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	94	309	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	115	516	3	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	172	614	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	120	440	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	140	465	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257770	16257770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779103344		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	52	497	1	ENST00000375759.3:c.5035G>A	p.Val1679Ile	p.V1679I	ENST00000375759	NM_015001.2	1679	Gtc/Atc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540634	187540634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201741692		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	87	338	0	ENST00000441802.2:c.7106C>T	p.Thr2369Met	p.T2369M	ENST00000441802	NM_005245.3	2369	aCg/aTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435777	56435777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1055597951		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	167	595	0	ENST00000407977.2:c.1360C>T	p.Arg454Cys	p.R454C	ENST00000407977		454	Cgc/Tgc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574664	41574664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	250	971	1	ENST00000263253.7:c.6949C>T	p.Arg2317Trp	p.R2317W	ENST00000263253	NM_001429.3	2317	Cgg/Tgg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	136	407	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
CIC	23152	MSKCC	GRCh37	19	42795609	42795609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	265	927	1	ENST00000575354.2:c.2694del	p.Ala900ProfsTer24	p.A900Pfs*24	ENST00000575354	NM_015125.3	897	Ccc/cc																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	37	358	0	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31368196	31368196	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367766007		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	228	866	0	ENST00000328111.2:c.67G>A	p.Val23Ile	p.V23I	ENST00000328111	NM_006892.3	23	Gtc/Atc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641388	23641388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780820		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	168	723	0	ENST00000261584.4:c.2087C>T	p.Thr696Met	p.T696M	ENST00000261584	NM_024675.3	696	aCg/aTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	106	198	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225360560	225360561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	26	83	0	ENST00000264414.4:c.1830dup	p.Tyr611IlefsTer4	p.Y611Ifs*4	ENST00000264414	NM_003590.4	610	-/A																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128201212	128201212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374025668		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	73	689	0	ENST00000265960.3:c.1523G>A	p.Arg508His	p.R508H	ENST00000265960	NM_001006617.1	508	cGt/cAt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2135297	2135297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1332979299		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	233	813	1	ENST00000219476.3:c.4636G>A	p.Ala1546Thr	p.A1546T	ENST00000219476	NM_000548.3	1546	Gcc/Acc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	211	856	14	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630711	90630711	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1339259178		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	189	599	2	ENST00000330062.3:c.775G>A	p.Asp259Asn	p.D259N	ENST00000330062	NM_002168.2	259	Gat/Aat																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806153	1806153	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28931615		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1244	33	1046	1	ENST00000260795.2:c.1172C>T	p.Ala391Val	p.A391V	ENST00000260795		391	gCg/gTg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17384726	17384726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368554117		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	205	750	1	ENST00000359435.4:c.358G>A	p.Ala120Thr	p.A120T	ENST00000359435	NM_001033549.1	120	Gcc/Acc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350059	89350059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	206	830	3	ENST00000301030.4:c.2891G>A	p.Gly964Asp	p.G964D	ENST00000301030	NM_001256183.1	964	gGc/gAc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959240	2959240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354898		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	161	674	0	ENST00000396946.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000396946	NM_032415.4	759	cGg/cAg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11027404	11027404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868638712		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	283	1027	3	ENST00000327064.4:c.971C>T	p.Ser324Leu	p.S324L	ENST00000327064	NM_199141.1	324	tCg/tTg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166275	32166275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs967436228		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	226	781	1	ENST00000375023.3:c.4679C>T	p.Ala1560Val	p.A1560V	ENST00000375023	NM_004557.3	1560	gCg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425823	49425824	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs757932721		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	142	747	0	ENST00000301067.7:c.12662_12664dup	p.Gln4221dup	p.Q4221dup	ENST00000301067	NM_003482.3	4221	cta/cAGCta																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426973	49426973	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	184	747	3	ENST00000301067.7:c.11515del	p.Gln3839SerfsTer42	p.Q3839Sfs*42	ENST00000301067	NM_003482.3	3839	Cag/ag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470968	25470968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1483397095		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	239	945	1	ENST00000264709.3:c.793G>A	p.Val265Met	p.V265M	ENST00000264709	NM_175629.2	265	Gtg/Atg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794899	242794899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	246	913	1	ENST00000334409.5:c.310C>T	p.Arg104Cys	p.R104C	ENST00000334409	NM_005018.2	104	Cgt/Tgt																																																																														
MST1	4485	MSKCC	GRCh37	3	49722238	49722238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369252300		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	160	623	0	ENST00000449682.2:c.1702C>T	p.Arg568Trp	p.R568W	ENST00000449682	NM_020998.3	568	Cgg/Tgg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919939	50919939	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757190258		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	235	916	1	ENST00000440232.2:c.3026G>A	p.Arg1009His	p.R1009H	ENST00000440232	NM_002691.3	1009	cGc/cAc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25536804	25536804	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1299885148		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	271	955	5	ENST00000264709.3:c.50C>T	p.Ala17Val	p.A17V	ENST00000264709	NM_175629.2	17	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524600	187524600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150034185		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	46	576	1	ENST00000441802.2:c.11080G>A	p.Val3694Ile	p.V3694I	ENST00000441802	NM_005245.3	3694	Gtc/Atc																																																																														
RARA	5914	MSKCC	GRCh37	17	38512297	38512297	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762998209		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	249	980	4	ENST00000254066.5:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000254066	NM_000964.3	403	cCg/cTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821644	72821644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762700822		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	34	127	0	ENST00000268489.5:c.10531G>A	p.Gly3511Ser	p.G3511S	ENST00000268489	NM_006885.3	3511	Ggt/Agt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468108	50468108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750934235		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	50	512	1	ENST00000331340.3:c.1343C>T	p.Ala448Val	p.A448V	ENST00000331340	NM_006060.4	448	gCg/gTg																																																																														
FAM175A	0	MSKCC	GRCh37	4	84391521	84391521	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542570943		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	79	170	0	ENST00000321945.7:c.311G>A	p.Arg104His	p.R104H	ENST00000321945	NM_139076.2	104	cGt/cAt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187710	11187710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	41	609	1	ENST00000361445.4:c.6187del	p.Gln2063ArgfsTer3	p.Q2063Rfs*3	ENST00000361445	NM_004958.3	2063	Cag/ag																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076758	72076758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	39	582	0	ENST00000357731.5:c.739G>T	p.Gly247Cys	p.G247C	ENST00000357731	NM_173808.2	247	Ggt/Tgt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120512155	120512155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	43	440	0	ENST00000256646.2:c.1087A>G	p.Met363Val	p.M363V	ENST00000256646	NM_024408.3	363	Atg/Gtg																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226253376	226253376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	63	208	0	ENST00000366813.1:c.148C>T	p.Arg50Cys	p.R50C	ENST00000366813		50	Cgt/Tgt																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263922	104263922	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs948353979		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	30	110	0	ENST00000369902.3:c.13C>T	p.Arg5Trp	p.R5W	ENST00000369902	NM_016169.3	5	Cgg/Tgg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625177	69625177	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs281860305		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	84	907	0	ENST00000334134.2:c.616del	p.Val206SerfsTer?	p.V206Sfs*?	ENST00000334134	NM_005247.2	206	Gtc/tc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447013	49447013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	118	394	0	ENST00000301067.7:c.931C>T	p.Pro311Ser	p.P311S	ENST00000301067	NM_003482.3	311	Cct/Tct																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861960	57861960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	119	608	0	ENST00000228682.2:c.1261G>T	p.Gly421Cys	p.G421C	ENST00000228682	NM_005269.2	421	Ggt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133241948	133241948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	206	791	0	ENST00000320574.5:c.2408C>T	p.Ser803Leu	p.S803L	ENST00000320574	NM_006231.2	803	tCg/tTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562867	21562867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	254	954	1	ENST00000382592.4:c.1052C>T	p.Ser351Leu	p.S351L	ENST00000382592	NM_014572.2	351	tCg/tTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48954332	48954332	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	72	105	0	ENST00000267163.4:c.1453T>C	p.Ser485Pro	p.S485P	ENST00000267163	NM_000321.2	485	Tct/Cct																																																																														
MGA	23269	MSKCC	GRCh37	15	42050011	42050012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	33	97	0	ENST00000219905.7:c.7170dup	p.Ala2391SerfsTer3	p.A2391Sfs*3	ENST00000219905	NM_001164273.1	2389	gaa/gAaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88727458	88727459	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	171	617	0	ENST00000360948.2:c.320dup	p.Leu108AlafsTer30	p.L108Afs*30	ENST00000360948	NM_001012338.2	107	aag/aaAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778834	3778834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1346068669		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	226	928	1	ENST00000262367.5:c.6214C>T	p.Arg2072Trp	p.R2072W	ENST00000262367	NM_004380.2	2072	Cgg/Tgg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647475	23647475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	124	414	0	ENST00000261584.4:c.392G>T	p.Arg131Met	p.R131M	ENST00000261584	NM_024675.3	131	aGg/aTg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50811799	50811799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	33	84	0	ENST00000398568.2:c.1076C>A	p.Ser359Tyr	p.S359Y	ENST00000398568	NM_001042412.1	359	tCt/tAt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865836	56865836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747390049		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	117	357	2	ENST00000308159.5:c.1168G>A	p.Val390Met	p.V390M	ENST00000308159	NM_014669.4	390	Gtg/Atg																																																																														
CDH1	999	MSKCC	GRCh37	16	68772272	68772272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786202465		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	268	1027	0	ENST00000261769.5:c.121G>A	p.Val41Met	p.V41M	ENST00000261769	NM_004360.3	41	Gtg/Atg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346113	89346114	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	48	231	0	ENST00000301030.4:c.6836_6837del	p.Val2279GlyfsTer16	p.V2279Gfs*16	ENST00000301030	NM_001256183.1	2279	gTG/g																																																																														
NF1	4763	MSKCC	GRCh37	17	29701085	29701085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	148	401	0	ENST00000358273.4:c.8432G>A	p.Gly2811Glu	p.G2811E	ENST00000358273	NM_001042492.2	2811	gGa/gAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37649063	37649063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	122	353	0	ENST00000447079.4:c.2168G>A	p.Cys723Tyr	p.C723Y	ENST00000447079	NM_015083.1	723	tGt/tAt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650861	37650861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	161	401	0	ENST00000447079.4:c.2333T>C	p.Leu778Pro	p.L778P	ENST00000447079	NM_015083.1	778	cTt/cCt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883558	37883558	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1198735577		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	215	784	0	ENST00000269571.5:c.3170G>A	p.Gly1057Glu	p.G1057E	ENST00000269571		1057	gGg/gAg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78858844	78858844	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199928822		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	218	856	0	ENST00000306801.3:c.1879G>A	p.Val627Met	p.V627M	ENST00000306801	NM_020761.2	627	Gtg/Atg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216398	2216398	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749779365		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	242	898	1	ENST00000398665.3:c.2042G>A	p.Arg681His	p.R681H	ENST00000398665	NM_032482.2	681	cGc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210578	5210578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1420539666		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	205	718	0	ENST00000357368.4:c.5389G>A	p.Glu1797Lys	p.E1797K	ENST00000357368	NM_002850.3	1797	Gag/Aag																																																																														
INSR	3643	MSKCC	GRCh37	19	7267524	7267524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	191	670	1	ENST00000302850.5:c.484C>T	p.Arg162Cys	p.R162C	ENST00000302850	NM_000208.2	162	Cgt/Tgt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10251522	10251522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	57	787	0	ENST00000340748.4:c.3410C>A	p.Pro1137His	p.P1137H	ENST00000340748		1137	cCc/cAc																																																																														
CALR	811	MSKCC	GRCh37	19	13049581	13049581	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1199946705		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	182	783	0	ENST00000316448.5:c.88G>A	p.Gly30Arg	p.G30R	ENST00000316448	NM_004343.3	30	Gga/Aga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271945	15271945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	244	970	0	ENST00000263388.2:c.6494C>A	p.Pro2165His	p.P2165H	ENST00000263388	NM_000435.2	2165	cCt/cAt																																																																														
ERF	2077	MSKCC	GRCh37	19	42753419	42753419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	252	946	0	ENST00000222329.4:c.845C>T	p.Thr282Met	p.T282M	ENST00000222329	NM_006494.2	282	aCg/aTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905630	50905630	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1366413924		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	259	968	1	ENST00000440232.2:c.758G>A	p.Arg253Gln	p.R253Q	ENST00000440232	NM_002691.3	253	cGg/cAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030588	48030588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749843		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	73	364	0	ENST00000234420.5:c.3202C>T	p.Arg1068Ter	p.R1068*	ENST00000234420	NM_000179.2	1068	Cga/Tga																																																																														
BARD1	580	MSKCC	GRCh37	2	215609821	215609821	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	30	126	0	ENST00000260947.4:c.1873C>G	p.Leu625Val	p.L625V	ENST00000260947	NM_000465.2	625	Ctc/Gtc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660771	227660771	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs778801905		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	170	629	1	ENST00000305123.5:c.2684A>G	p.Glu895Gly	p.E895G	ENST00000305123	NM_005544.2	895	gAa/gGa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30733030	30733030	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755070814		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	111	466	2	ENST00000359013.4:c.1718C>T	p.Ser573Leu	p.S573L	ENST00000359013	NM_001024847.2	573	tCg/tTg																																																																														
MST1	4485	MSKCC	GRCh37	3	49721516	49721516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	191	719	0	ENST00000449682.2:c.2123T>C	p.Phe708Ser	p.F708S	ENST00000449682	NM_020998.3	708	tTc/tCc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673821	30673821	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	99	444	0	ENST00000376406.3:c.3139G>C	p.Ala1047Pro	p.A1047P	ENST00000376406	NM_014641.2	1047	Gcc/Ccc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209409	98209409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745337014		P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	195	780	0	ENST00000331920.6:c.4129G>A	p.Val1377Met	p.V1377M	ENST00000331920	NM_000264.3	1377	Gtg/Atg																																																																														
MED12	9968	MSKCC	GRCh37	X	70344102	70344102	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	231	392	0	ENST00000374080.3:c.1838T>C	p.Met613Thr	p.M613T	ENST00000374080		613	aTg/aCg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0041663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	64	219	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519961		P-0041829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	181	417	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0041829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	718	474	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
CIC	23152	MSKCC	GRCh37	19	42794886	42794886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	547	836	2	ENST00000575354.2:c.1966G>T	p.Ala656Ser	p.A656S	ENST00000575354	NM_015125.3	656	Gcc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	11	473	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0041862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	34	743	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112915797	112915797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	27	436	0	ENST00000351677.2:c.1070C>T	p.Thr357Met	p.T357M	ENST00000351677	NM_002834.3	357	aCg/aTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199469669		P-0041865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	18	722	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0041865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	131	816	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907684	111907684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	43	515	0	ENST00000393256.3:c.458G>C	p.Arg153Pro	p.R153P	ENST00000393256	NM_006538.4	153	cGg/cCg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38194823	38194823	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0041865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	23	413	0	ENST00000317025.8:c.910G>T	p.Gly304Cys	p.G304C	ENST00000317025	NM_023034.1	304	Ggt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291798	15291800	+	frameshift_variant	Frame_Shift_Del	DEL	CGA	CGA	G			P-0041865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	219	1033	0	ENST00000263388.2:c.2966_2968delinsC	p.Leu989ProfsTer45	p.L989Pfs*45	ENST00000263388	NM_000435.2	989	cTCGag/cCag																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0041873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	136	398	1	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0041873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	394	934	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186505331	186505331	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	182	386	0	ENST00000323963.5:c.958del	p.Arg320GlyfsTer8	p.R320Gfs*8	ENST00000323963		319	ttC/tt																																																																														
SDHA	6389	MSKCC	GRCh37	5	218483	218483	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs770866830		P-0041904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	81	129	0	ENST00000264932.6:c.13C>G	p.Arg5Gly	p.R5G	ENST00000264932	NM_004168.2	5	Cgg/Ggg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69011971	69011971	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	260	669	0	ENST00000288368.4:c.2608C>G	p.Leu870Val	p.L870V	ENST00000288368	NM_024870.2	870	Cta/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7579317	7579317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	400	557	0	ENST00000269305.4:c.370del	p.Cys124AlafsTer46	p.C124Afs*46	ENST00000269305	NM_001126112.2	124	Tgc/gc																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207786	29207786	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	173	546	0	ENST00000240100.2:c.10A>G	p.Met4Val	p.M4V	ENST00000240100	NM_001394.6	4	Atg/Gtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928077	178928084	+	protein_altering_variant	In_Frame_Del	DEL	TAGAAGAT	TAGAAGAT	CAGAA			P-0041937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	120	422	0	ENST00000263967.3:c.1355_1362delinsCAGAA	p.Leu452_Asp454delinsSerGlu	p.L452_D454delinsSE	ENST00000263967	NM_006218.2	452	tTAGAAGAT/tCAGAA																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247372	153247372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	71	266	0	ENST00000281708.4:c.1430G>T	p.Gly477Val	p.G477V	ENST00000281708	NM_033632.3	477	gGt/gTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836272	151836272	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0041937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	188	400	0	ENST00000262189.6:c.14533A>G	p.Arg4845Gly	p.R4845G	ENST00000262189	NM_170606.2	4845	Agg/Ggg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787806	135787806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	65	391	0	ENST00000298552.3:c.776G>T	p.Cys259Phe	p.C259F	ENST00000298552	NM_001162426.1	259	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0041944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	586	479	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864700	68864700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	138	328	1	ENST00000288368.4:c.71G>A	p.Arg24His	p.R24H	ENST00000288368	NM_024870.2	24	cGc/cAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104606	69104606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	163	484	0	ENST00000288368.4:c.4450C>G	p.Arg1484Gly	p.R1484G	ENST00000288368	NM_024870.2	1484	Cga/Gga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061137	38061167	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCG	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCG	-			P-0041955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	145	211	0	ENST00000250448.2:c.822_852del	p.Gly275AlafsTer36	p.G275Afs*36	ENST00000250448	NM_004496.3	274	gcCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGC/gc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641214	3641214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs546657275		P-0041955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	318	1016	2	ENST00000294008.3:c.2425G>A	p.Glu809Lys	p.E809K	ENST00000294008	NM_032444.2	809	Gaa/Aaa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618903	37618952	+	frameshift_variant	Frame_Shift_Del	DEL	GCACAAAGACCGGAGTAAAAGTCATCGAAAAAGGGAAACACCCAAAAGTT	GCACAAAGACCGGAGTAAAAGTCATCGAAAAAGGGAAACACCCAAAAGTT	-			P-0041955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	192	710	0	ENST00000447079.4:c.579_628del	p.His194GlnfsTer19	p.H194Qfs*19	ENST00000447079	NM_015083.1	193	ggGCACAAAGACCGGAGTAAAAGTCATCGAAAAAGGGAAACACCCAAAAGTTac/ggac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	138	575	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0041956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	152	1194	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	374	622	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108040	30108040	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs148748320		P-0042067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	202	849	0	ENST00000331968.5:c.767C>A	p.Pro256Gln	p.P256Q	ENST00000331968	NM_002742.2	256	cCa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577589	7577600	+	inframe_deletion	In_Frame_Del	DEL	GTGGTACAGTCA	GTGGTACAGTCA	-			P-0042067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	651	905	0	ENST00000269305.4:c.681_692del	p.Asp228_Thr231del	p.D228_T231del	ENST00000269305	NM_001126112.2	227	tcTGACTGTACCACc/tcc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201708	66201708	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	505	705	0	ENST00000273854.3:c.2794T>A	p.Leu932Met	p.L932M	ENST00000273854	NM_004439.5	932	Ttg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	98	508	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	25	449	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	75	531	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913783	32913783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	60	460	0	ENST00000380152.3:c.5291C>T	p.Ser1764Leu	p.S1764L	ENST00000380152		1764	tCa/tTa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81971431	81971431	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	86	657	0	ENST00000359376.3:c.3121G>C	p.Glu1041Gln	p.E1041Q	ENST00000359376	NM_002661.3	1041	Gag/Cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106526	27106529	+	frameshift_variant	Frame_Shift_Del	DEL	TGGA	TGGA	-			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	107	940	0	ENST00000324856.7:c.6137_6140del	p.Val2046GlyfsTer88	p.V2046Gfs*88	ENST00000324856	NM_006015.4	2046	gTGGAg/gg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692883	89692883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	48	414	0	ENST00000371953.3:c.367C>A	p.His123Asn	p.H123N	ENST00000371953	NM_000314.4	123	Cac/Aac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913651	32913651	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs80358740		P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	48	426	0	ENST00000380152.3:c.5159C>G	p.Ser1720Ter	p.S1720*	ENST00000380152		1720	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579442	7579575	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTG	GGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTG	-			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	37	865	1	ENST00000269305.4:c.112_245del	p.Gln38GlyfsTer66	p.Q38Gfs*66	ENST00000269305	NM_001126112.2	38	CAAGCAATGGATGATTTGATGCTGTCCCCGGACGATATTGAACAATGGTTCACTGAAGACCCAGGTCCAGATGAAGCTCCCAGAATGCCAGAGGCTGCTCCCCCCGTGGCCCCTGCACCAGCAGCTCCTACACCg/g																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075308	16075309	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	C			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	51	461	0	ENST00000268712.3:c.243dup	p.Pro82AlafsTer7	p.P82Afs*7	ENST00000268712	NM_006311.3	81	-/G																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11118632	11118632	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	82	701	0	ENST00000344626.4:c.2056G>T	p.Glu686Ter	p.E686*	ENST00000344626	NM_003072.3	686	Gag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211859	36211859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	114	1011	0	ENST00000222270.7:c.1610C>G	p.Ser537Cys	p.S537C	ENST00000222270	NM_014727.1	537	tCc/tGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222823	36222823	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	91	996	0	ENST00000222270.7:c.5452G>T	p.Glu1818Ter	p.E1818*	ENST00000222270	NM_014727.1	1818	Gag/Tag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45871890	45871890	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	91	736	0	ENST00000391945.4:c.358G>C	p.Glu120Gln	p.E120Q	ENST00000391945	NM_000400.3	120	Gag/Cag																																																																														
ALK	238	MSKCC	GRCh37	2	29462662	29462662	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762395127		P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	65	894	0	ENST00000389048.3:c.2239G>A	p.Gly747Arg	p.G747R	ENST00000389048	NM_004304.4	747	Ggg/Agg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164861	47164861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	36	391	0	ENST00000409792.3:c.1265C>T	p.Ser422Leu	p.S422L	ENST00000409792	NM_014159.6	422	tCa/tTa																																																																														
TP63	8626	MSKCC	GRCh37	3	189604332	189604332	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	32	502	1	ENST00000264731.3:c.1499G>C	p.Gly500Ala	p.G500A	ENST00000264731	NM_003722.4	500	gGa/gCa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286580	33286580	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	172	594	0	ENST00000374542.5:c.2164-1G>A		p.X722_splice	ENST00000374542	NM_001141970.1	722																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287189	33287189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	139	754	1	ENST00000374542.5:c.1908G>T	p.Lys636Asn	p.K636N	ENST00000374542	NM_001141970.1	636	aaG/aaT																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287395	33287395	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs943558347		P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	118	681	0	ENST00000374542.5:c.1702G>C	p.Glu568Gln	p.E568Q	ENST00000374542	NM_001141970.1	568	Gag/Cag																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287461	33287461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	141	760	0	ENST00000374542.5:c.1636G>A	p.Glu546Lys	p.E546K	ENST00000374542	NM_001141970.1	546	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945204	44945205	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	93	370	0	ENST00000377967.4:c.3529_3530del	p.Leu1177GlufsTer2	p.L1177Efs*2	ENST00000377967	NM_021140.2	1176	gtTCtg/gttg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223512	53223512	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	24	402	0	ENST00000375401.3:c.3847G>C	p.Glu1283Gln	p.E1283Q	ENST00000375401	NM_004187.3	1283	Gag/Cag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954272	32954273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs886038189		P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	147	451	0	ENST00000380152.3:c.9253dup	p.Thr3085AsnfsTer26	p.T3085Nfs*26	ENST00000380152		3082	-/A																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913409		P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	10	470	0	ENST00000349496.5:c.134C>G	p.Ser45Cys	p.S45C	ENST00000349496	NM_001904.3	45	tCt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101378	27101378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	238	722	0	ENST00000324856.7:c.4660C>T	p.Pro1554Ser	p.P1554S	ENST00000324856	NM_006015.4	1554	Cca/Tca																																																																														
CCND2	894	MSKCC	GRCh37	12	4383342	4383342	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	129	889	0	ENST00000261254.3:c.136T>G	p.Cys46Gly	p.C46G	ENST00000261254	NM_001759.3	46	Tgc/Ggc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912080	32912081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	256	765	0	ENST00000380152.3:c.3593dup	p.Asn1198LysfsTer2	p.N1198Kfs*2	ENST00000380152		1196	-/A																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681066	37681066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	185	662	0	ENST00000447079.4:c.3235G>A	p.Val1079Met	p.V1079M	ENST00000447079	NM_015083.1	1079	Gtg/Atg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41265783	41266198	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAG	TGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAG	-			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	23	69	0	ENST00000349496.5:c.13+214_198del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178601	56178601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	124	351	0	ENST00000399503.3:c.3574G>C	p.Ala1192Pro	p.A1192P	ENST00000399503	NM_005921.1	1192	Gcc/Ccc																																																																														
PARK2	0	MSKCC	GRCh37	6	162864377	162864377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	141	594	0	ENST00000366898.1:c.136G>T	p.Ala46Ser	p.A46S	ENST00000366898	NM_004562.2	46	Gca/Tca																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205516	38205516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	270	913	0	ENST00000317025.8:c.174G>C	p.Gln58His	p.Q58H	ENST00000317025	NM_023034.1	58	caG/caC																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978599	70978599	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	424	768	0	ENST00000276594.2:c.1054A>C	p.Ser352Arg	p.S352R	ENST00000276594	NM_024504.3	352	Agc/Cgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0042157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			738	61	551	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0042157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	185	473	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910685	29910685	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs199474408		P-0042157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	191	943	0	ENST00000376809.5:c.225G>A	p.Trp75Ter	p.W75*	ENST00000376809	NM_002116.7	75	tgG/tgA																																																																														
MET	4233	MSKCC	GRCh37	7	116339974	116339974	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	161	344	0	ENST00000397752.3:c.836T>C	p.Ile279Thr	p.I279T	ENST00000397752	NM_000245.2	279	aTc/aCc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944258	81944258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750403828		P-0042157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			578	42	532	0	ENST00000359376.3:c.1867C>T	p.Arg623Cys	p.R623C	ENST00000359376	NM_002661.3	623	Cgc/Tgc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867698	45867698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			663	35	550	0	ENST00000391945.4:c.702C>G	p.Asp234Glu	p.D234E	ENST00000391945	NM_000400.3	234	gaC/gaG																																																																														
ABL1	25	MSKCC	GRCh37	9	133760618	133760618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769473644		P-0042157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			799	44	712	1	ENST00000318560.5:c.2941G>A	p.Val981Ile	p.V981I	ENST00000318560	NM_005157.4	981	Gtt/Att																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0042162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	466	673	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0042162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	422	657	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356269	66356269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200754741		P-0042162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	342	612	2	ENST00000273854.3:c.1228G>A	p.Gly410Ser	p.G410S	ENST00000273854	NM_004439.5	410	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519938		P-0042162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	438	280	0	ENST00000263967.3:c.1034A>C	p.Asn345Thr	p.N345T	ENST00000263967	NM_006218.2	345	aAt/aCt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720803	89720805	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0042162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	122	234	0	ENST00000371953.3:c.955_957del	p.Thr319del	p.T319del	ENST00000371953	NM_000314.4	318	ctTACt/ctt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0042177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	108	314	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710585	114710585	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	286	710	2	ENST00000543371.1:c.70G>T	p.Glu24Ter	p.E24*	ENST00000543371	NM_001198531.1	24	Gag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478816	56478816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	32	782	0	ENST00000267101.3:c.272T>C	p.Met91Thr	p.M91T	ENST00000267101	NM_001982.3	91	aTg/aCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	128	514	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	238	585	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	140	609	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259397	11259397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	164	683	0	ENST00000361445.4:c.4171C>G	p.Arg1391Gly	p.R1391G	ENST00000361445	NM_004958.3	1391	Cga/Gga																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850777	63850777	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	127	653	0	ENST00000279873.7:c.1555G>T	p.Glu519Ter	p.E519*	ENST00000279873	NM_032199.2	519	Gaa/Taa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341251	89341251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	130	511	0	ENST00000301030.4:c.7684G>A	p.Glu2562Lys	p.E2562K	ENST00000301030	NM_001256183.1	2562	Gag/Aag																																																																														
CCND1	595	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	213	918	0	ENST00000227507.2:c.859C>A	p.Pro287Thr	p.P287T	ENST00000227507	NM_053056.2	287	Ccc/Acc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32182013	32182013	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141422504		P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	193	990	0	ENST00000375023.3:c.2041G>A	p.Val681Met	p.V681M	ENST00000375023	NM_004557.3	681	Gtg/Atg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099361	27099361	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	159	712	0	ENST00000324856.7:c.3598C>T	p.Gln1200Ter	p.Q1200*	ENST00000324856	NM_006015.4	1200	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097665	27097665	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	175	719	0	ENST00000324856.7:c.3254C>A	p.Ser1085Ter	p.S1085*	ENST00000324856	NM_006015.4	1085	tCa/tAa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982330	201982374	+	inframe_deletion	In_Frame_Del	DEL	AAGGGGGATCCCAAGCACGGGAAGCGGAAACGAGGCCGGCCCCGA	AAGGGGGATCCCAAGCACGGGAAGCGGAAACGAGGCCGGCCCCGA	-			P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	75	920	0	ENST00000359651.3:c.712_756del	p.Gly238_Lys252del	p.G238_K252del	ENST00000359651		237	AAGGGGGATCCCAAGCACGGGAAGCGGAAACGAGGCCGGCCCCGA/-																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845596	63845608	+	frameshift_variant	Frame_Shift_Del	DEL	ACATGAAATACCT	ACATGAAATACCT	-			P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	57	350	1	ENST00000279873.7:c.1336_1348del	p.His446LysfsTer29	p.H446Kfs*29	ENST00000279873	NM_032199.2	445	aaACATGAAATACCT/aa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851736	63851737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCCTCTACAGACACACCGAGC			P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	132	777	0	ENST00000279873.7:c.2516_2537dup	p.His846GlnfsTer12	p.H846Qfs*12	ENST00000279873	NM_032199.2	838	-/AGCCTCTACAGACACACCGAGC																																																																														
CD79A	973	MSKCC	GRCh37	19	42384929	42384935	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGGG	CCCAGGG	-			P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	112	678	0	ENST00000221972.3:c.568-3_571del		p.X190_splice	ENST00000221972	NM_021601.3	190																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927978	178927988	+	protein_altering_variant	In_Frame_Del	DEL	ACTGTCCATTG	ACTGTCCATTG	GC			P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	94	387	1	ENST00000263967.3:c.1256_1266delinsGC	p.His419_Leu422delinsArg	p.H419_L422delinsR	ENST00000263967	NM_006218.2	419	cACTGTCCATTG/cGC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891335	151891335	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	108	371	0	ENST00000262189.6:c.4519G>T	p.Gly1507Ter	p.G1507*	ENST00000262189	NM_170606.2	1507	Gga/Tga																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371744	55371744	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	131	569	0	ENST00000297316.4:c.434T>A	p.Val145Glu	p.V145E	ENST00000297316	NM_022454.3	145	gTg/gAg																																																																														
RET	5979	MSKCC	GRCh37	10	43609994	43609994	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148935214		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	65	978	2	ENST00000355710.3:c.1946C>T	p.Ser649Leu	p.S649L	ENST00000355710	NM_020975.4	649	tCg/tTg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	15	286	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435317	56435317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200066146		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	214	673	0	ENST00000407977.2:c.1820C>T	p.Ser607Leu	p.S607L	ENST00000407977		607	tCg/tTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276316	15276316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372834264		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	113	777	0	ENST00000263388.2:c.5678G>A	p.Arg1893Gln	p.R1893Q	ENST00000263388	NM_000435.2	1893	cGa/cAa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636134	28636134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200841206		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	234	633	0	ENST00000241453.7:c.238G>A	p.Ala80Thr	p.A80T	ENST00000241453	NM_004119.2	80	Gct/Act																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	132	528	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721157	176721157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373571733		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	135	414	0	ENST00000439151.2:c.6788C>T	p.Ser2263Leu	p.S2263L	ENST00000439151	NM_022455.4	2263	tCg/tTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	124	404	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177626	56177626	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs530669321		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	72	424	0	ENST00000399503.3:c.2599G>A	p.Glu867Lys	p.E867K	ENST00000399503	NM_005921.1	867	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112177049	112177049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	28	442	0	ENST00000257430.4:c.5758C>T	p.Arg1920Ter	p.R1920*	ENST00000257430	NM_000038.5	1920	Cga/Tga																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780209	9780209	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373779625		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	241	822	1	ENST00000377346.4:c.1379G>A	p.Arg460His	p.R460H	ENST00000377346	NM_005026.3	460	cGc/cAc																																																																														
STK40	83931	MSKCC	GRCh37	1	36807573	36807573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs774376244		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	164	582	0	ENST00000373129.3:c.1091C>T	p.Ala364Val	p.A364V	ENST00000373129	NM_032017.1	364	gCg/gTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303028	15303028	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773630799		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	272	993	3	ENST00000263388.2:c.422G>A	p.Arg141His	p.R141H	ENST00000263388	NM_000435.2	141	cGc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76909629	76909629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	89	474	1	ENST00000373344.5:c.4276C>T	p.Arg1426Ter	p.R1426*	ENST00000373344	NM_000489.3	1426	Cga/Tga																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495360	149495360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114435947		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	202	773	0	ENST00000261799.4:c.3287C>T	p.Ala1096Val	p.A1096V	ENST00000261799	NM_002609.3	1096	gCg/gTg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111854391		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	33	404	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	161	537	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037474	12037474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	32	505	0	ENST00000396373.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000396373	NM_001987.4	369	Cgg/Tgg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247028	53247028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	58	677	0	ENST00000375401.3:c.472G>A	p.Glu158Lys	p.E158K	ENST00000375401	NM_004187.3	158	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938029	76938029	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	141	621	2	ENST00000373344.5:c.2719C>T	p.Arg907Ter	p.R907*	ENST00000373344	NM_000489.3	907	Cga/Tga																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126393	5126393	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	105	314	0	ENST00000381652.3:c.3238G>T	p.Glu1080Ter	p.E1080*	ENST00000381652	NM_004972.3	1080	Gaa/Taa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	33	241	0	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	172	609	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900171	101900171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	18	313	1	ENST00000374994.4:c.605C>T	p.Ala202Val	p.A202V	ENST00000374994	NM_004612.2	202	gCg/gTg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900239	101900239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	37	443	0	ENST00000374994.4:c.673C>T	p.Arg225Trp	p.R225W	ENST00000374994	NM_004612.2	225	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341196	8341196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	22	395	0	ENST00000356435.5:c.5020C>T	p.Arg1674Cys	p.R1674C	ENST00000356435		1674	Cgc/Tgc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440379	52440379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	84	564	0	ENST00000460680.1:c.673G>A	p.Asp225Asn	p.D225N	ENST00000460680	NM_004656.3	225	Gac/Aac																																																																														
ATR	545	MSKCC	GRCh37	3	142275399	142275399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202162034		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	79	352	0	ENST00000350721.4:c.1904G>A	p.Arg635Gln	p.R635Q	ENST00000350721	NM_001184.3	635	cGa/cAa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47657021	47657021	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146567853		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	129	319	0	ENST00000233146.2:c.1217G>A	p.Arg406Gln	p.R406Q	ENST00000233146	NM_000251.2	406	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532867	187532867	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762890230		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	41	452	0	ENST00000441802.2:c.9526G>A	p.Glu3176Lys	p.E3176K	ENST00000441802	NM_005245.3	3176	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012465	29012465	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373801409		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	97	446	0	ENST00000282397.4:c.406G>A	p.Val136Ile	p.V136I	ENST00000282397	NM_002019.4	136	Gta/Ata																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	142	465	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814713	139814713	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753016580		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	106	688	0	ENST00000247668.2:c.706G>A	p.Glu236Lys	p.E236K	ENST00000247668	NM_021138.3	236	Gag/Aag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435219	110435219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746894027		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	70	623	0	ENST00000375856.3:c.3182C>T	p.Ser1061Leu	p.S1061L	ENST00000375856	NM_003749.2	1061	tCg/tTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	128	447	0	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435061	18435061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267603400		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	30	344	0	ENST00000266497.5:c.46G>A	p.Glu16Lys	p.E16K	ENST00000266497		16	Gaa/Aaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650710	67650710	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1243010179		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	168	689	0	ENST00000264010.4:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000264010	NM_006565.3	339	Cgg/Tgg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961884	15961884	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs970987519		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	117	376	0	ENST00000268712.3:c.5911G>A	p.Asp1971Asn	p.D1971N	ENST00000268712	NM_006311.3	1971	Gat/Aat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32899248	32899248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375125172		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	53	304	0	ENST00000380152.3:c.352C>T	p.Arg118Cys	p.R118C	ENST00000380152		118	Cgc/Tgc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	223	736	0	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906958	32906958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358423		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	43	390	0	ENST00000380152.3:c.1343G>A	p.Arg448His	p.R448H	ENST00000380152		448	cGt/cAt																																																																														
MED12	9968	MSKCC	GRCh37	X	70348535	70348535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	183	606	0	ENST00000374080.3:c.3442C>T	p.Arg1148Cys	p.R1148C	ENST00000374080		1148	Cgc/Tgc																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202457		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	89	344	2	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120360	94120360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs749418654		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	62	312	0	ENST00000369303.4:c.691C>T	p.Arg231Ter	p.R231*	ENST00000369303	NM_004440.3	231	Cga/Tga																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400902	72400902	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1450443698		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	100	359	0	ENST00000357731.5:c.269G>A	p.Arg90Gln	p.R90Q	ENST00000357731	NM_173808.2	90	cGa/cAa																																																																														
TET1	80312	MSKCC	GRCh37	10	70404693	70404693	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756914683		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	194	535	0	ENST00000373644.4:c.2207C>T	p.Ser736Leu	p.S736L	ENST00000373644	NM_030625.2	736	tCg/tTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453185	140453185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	80	270	0	ENST00000288602.6:c.1750C>T	p.Leu584Phe	p.L584F	ENST00000288602	NM_004333.4	584	Ctt/Ttt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317921	8317921	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150063446		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	119	430	1	ENST00000356435.5:c.5692C>T	p.Arg1898Cys	p.R1898C	ENST00000356435		1898	Cgt/Tgt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508824	106508824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1226994105		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	185	586	0	ENST00000359195.3:c.818G>A	p.Arg273His	p.R273H	ENST00000359195	NM_002649.2	273	cGc/cAc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729733	41729733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	37	578	0	ENST00000242208.4:c.796G>A	p.Glu266Lys	p.E266K	ENST00000242208	NM_002192.2	266	Gag/Aag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1239654517		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	29	376	0	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6031649	6031649	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs200640585		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	46	566	0	ENST00000265849.7:c.943C>T	p.Arg315Ter	p.R315*	ENST00000265849	NM_000535.5	315	Cga/Tga																																																																														
MRE11A	0	MSKCC	GRCh37	11	94203791	94203791	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190142346		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	46	231	0	ENST00000323929.3:c.863G>A	p.Arg288His	p.R288H	ENST00000323929	NM_005591.3	288	cGt/cAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820617	3820617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	123	842	0	ENST00000262367.5:c.2834C>T	p.Ser945Leu	p.S945L	ENST00000262367	NM_004380.2	945	tCg/tTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120318	94120318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41273629		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	20	290	0	ENST00000369303.4:c.733G>A	p.Ala245Thr	p.A245T	ENST00000369303	NM_004440.3	245	Gcc/Acc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027043	48027043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	92	388	0	ENST00000234420.5:c.1921G>T	p.Glu641Ter	p.E641*	ENST00000234420	NM_000179.2	641	Gaa/Taa																																																																														
TCEB1	0	MSKCC	GRCh37	8	74858992	74858992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	133	324	0	ENST00000518127.1:c.212C>T	p.Ser71Leu	p.S71L	ENST00000518127	NM_001204857.1	71	tCg/tTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950648	38950648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776074870		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	8	339	0	ENST00000357387.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000357387	NM_152756.3	1101	tCg/tTg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738094	145738094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561220929		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	89	941	2	ENST00000428558.2:c.2816C>T	p.Ala939Val	p.A939V	ENST00000428558	NM_004260.3	939	gCg/gTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854562		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	117	464	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
INHA	3623	MSKCC	GRCh37	2	220437275	220437275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370513243		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	76	1034	3	ENST00000243786.2:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000243786	NM_002191.3	60	cGa/cAa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs371769427		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	125	290	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854560		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	159	481	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
RET	5979	MSKCC	GRCh37	10	43598056	43598056	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751572082		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	77	678	1	ENST00000355710.3:c.604G>A	p.Val202Met	p.V202M	ENST00000355710	NM_020975.4	202	Gtg/Atg																																																																														
MET	4233	MSKCC	GRCh37	7	116371797	116371797	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774779741		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	58	434	1	ENST00000397752.3:c.1276C>T	p.Arg426Cys	p.R426C	ENST00000397752	NM_000245.2	426	Cgc/Tgc																																																																														
FYN	2534	MSKCC	GRCh37	6	112024169	112024169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465963577		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	38	458	0	ENST00000368678.4:c.616C>T	p.Arg206Cys	p.R206C	ENST00000368678		206	Cgc/Tgc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228018	53228018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199422238		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	201	836	1	ENST00000375401.3:c.2296C>T	p.Arg766Trp	p.R766W	ENST00000375401	NM_004187.3	766	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521544	8521544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	60	486	0	ENST00000356435.5:c.694C>T	p.Arg232Cys	p.R232C	ENST00000356435		232	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108124717	108124717	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751515818		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	101	363	0	ENST00000278616.4:c.2075G>A	p.Arg692His	p.R692H	ENST00000278616	NM_000051.3	692	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636719	176636719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140095431		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	151	503	1	ENST00000439151.2:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000439151	NM_022455.4	440	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746152219		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	171	572	0	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041624	47041624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	84	780	0	ENST00000329236.7:c.1615C>T	p.Pro539Ser	p.P539S	ENST00000329236	NM_001204466.1	539	Ccc/Tcc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456497	99456497	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45553041		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	51	382	0	ENST00000268035.6:c.1814G>A	p.Arg605His	p.R605H	ENST00000268035	NM_000875.3	605	cGc/cAc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430786	181430786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	63	903	0	ENST00000325404.1:c.638C>T	p.Ser213Leu	p.S213L	ENST00000325404	NM_003106.3	213	tCg/tTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629400	187629400	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1018407179		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	51	796	0	ENST00000441802.2:c.1582G>A	p.Glu528Lys	p.E528K	ENST00000441802	NM_005245.3	528	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41513352	41513352	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	196	580	2	ENST00000263253.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000263253	NM_001429.3	86	Cga/Tga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125634	47125634	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1357325164		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	57	395	0	ENST00000409792.3:c.5636G>A	p.Arg1879His	p.R1879H	ENST00000409792	NM_014159.6	1879	cGc/cAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81957133	81957133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1476399695		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	199	587	0	ENST00000359376.3:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000359376	NM_002661.3	784	cGa/cAa																																																																														
CASP8	841	MSKCC	GRCh37	2	202136279	202136279	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	66	529	1	ENST00000358485.4:c.523G>T	p.Glu175Ter	p.E175*	ENST00000358485	NM_001080125.1	175	Gaa/Taa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729807	41729807	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756546726		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	82	469	0	ENST00000242208.4:c.722G>A	p.Arg241Gln	p.R241Q	ENST00000242208	NM_002192.2	241	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1279465	1279465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866767063		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	250	891	0	ENST00000310581.5:c.2071C>T	p.Arg691Cys	p.R691C	ENST00000310581	NM_198253.2	691	Cgc/Tgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463578	25463578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770938712		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	233	655	2	ENST00000264709.3:c.2104G>A	p.Asp702Asn	p.D702N	ENST00000264709	NM_175629.2	702	Gat/Aat																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	135	325	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434122	12434122	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1170672782		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	24	295	0	ENST00000287820.6:c.490C>T	p.Arg164Trp	p.R164W	ENST00000287820	NM_015869.4	164	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630870	187630870	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751034262		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	193	543	0	ENST00000441802.2:c.112G>A	p.Glu38Lys	p.E38K	ENST00000441802	NM_005245.3	38	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965472	68965472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200682883		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	84	700	0	ENST00000288368.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000288368	NM_024870.2	362	Cgg/Tgg																																																																														
LYN	4067	MSKCC	GRCh37	8	56912075	56912075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	82	741	2	ENST00000519728.1:c.1303G>A	p.Glu435Lys	p.E435K	ENST00000519728	NM_002350.3	435	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931862	68931862	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200600940		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	81	613	0	ENST00000288368.4:c.292G>A	p.Glu98Lys	p.E98K	ENST00000288368	NM_024870.2	98	Gaa/Aaa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495351	149495351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373655593		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	81	731	2	ENST00000261799.4:c.3296C>T	p.Ala1099Val	p.A1099V	ENST00000261799	NM_002609.3	1099	gCg/gTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982134	93982134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773950345		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	41	290	0	ENST00000369303.4:c.1331C>T	p.Ser444Leu	p.S444L	ENST00000369303	NM_004440.3	444	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108153601	108153601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	39	141	0	ENST00000278616.4:c.3741C>A	p.Phe1247Leu	p.F1247L	ENST00000278616	NM_000051.3	1247	ttC/ttA																																																																														
CDK4	1019	MSKCC	GRCh37	12	58143065	58143065	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531817742		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	251	800	0	ENST00000257904.6:c.719G>A	p.Arg240Gln	p.R240Q	ENST00000257904	NM_000075.3	240	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828503	72828503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	70	715	0	ENST00000268489.5:c.8078G>A	p.Arg2693Gln	p.R2693Q	ENST00000268489	NM_006885.3	2693	cGa/cAa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30302690	30302690	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	57	496	0	ENST00000322652.5:c.781G>T	p.Glu261Ter	p.E261*	ENST00000322652	NM_015355.2	261	Gag/Tag																																																																														
INSR	3643	MSKCC	GRCh37	19	7267569	7267569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	103	838	0	ENST00000302850.5:c.439G>A	p.Glu147Lys	p.E147K	ENST00000302850	NM_000208.2	147	Gag/Aag																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799799	72799799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779590242		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	159	633	0	ENST00000325599.8:c.1370C>T	p.Ser457Leu	p.S457L	ENST00000325599	NM_018130.2	457	tCg/tTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38157028	38157028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	191	719	0	ENST00000317025.8:c.2692C>T	p.Arg898Cys	p.R898C	ENST00000317025	NM_023034.1	898	Cgt/Tgt																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793317	139793317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755436517		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	113	755	1	ENST00000247668.2:c.125G>A	p.Arg42His	p.R42H	ENST00000247668	NM_021138.3	42	cGc/cAc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100133	30100133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370296777		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	103	683	0	ENST00000331968.5:c.1487C>T	p.Thr496Met	p.T496M	ENST00000331968	NM_002742.2	496	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630251	187630251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773192852		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	144	596	0	ENST00000441802.2:c.731C>T	p.Thr244Met	p.T244M	ENST00000441802	NM_005245.3	244	aCg/aTg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111134	193111134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	45	385	0	ENST00000367435.3:c.667G>T	p.Asp223Tyr	p.D223Y	ENST00000367435	NM_024529.4	223	Gat/Tat																																																																														
IL10	3586	MSKCC	GRCh37	1	206943236	206943236	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs766492258		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	32	333	0	ENST00000423557.1:c.382C>T	p.Arg128Ter	p.R128*	ENST00000423557	NM_000572.2	128	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100301	27100301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	46	714	0	ENST00000324856.7:c.4013C>T	p.Ser1338Phe	p.S1338F	ENST00000324856	NM_006015.4	1338	tCc/tTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807914	3807914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	145	585	0	ENST00000262367.5:c.3505C>T	p.Arg1169Cys	p.R1169C	ENST00000262367	NM_004380.2	1169	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638731	176638731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151165525		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	91	691	1	ENST00000439151.2:c.3331G>A	p.Asp1111Asn	p.D1111N	ENST00000439151	NM_022455.4	1111	Gat/Aat																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023085	150023085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771059780		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	165	670	0	ENST00000253339.5:c.178G>A	p.Glu60Lys	p.E60K	ENST00000253339		60	Gaa/Aaa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026133	71026133	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs775136381		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	35	362	0	ENST00000318789.4:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000318789	NM_032682.5	497	Cga/Tga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162959	47162959	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776300341		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	136	367	0	ENST00000409792.3:c.3167C>T	p.Ser1056Leu	p.S1056L	ENST00000409792	NM_014159.6	1056	tCg/tTg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754575	57754575	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751788063		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	23	359	0	ENST00000274289.3:c.472C>T	p.Leu158Phe	p.L158F	ENST00000274289	NM_006622.3	158	Ctc/Ttc																																																																														
SDHA	6389	MSKCC	GRCh37	5	224529	224529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370481102		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	34	444	0	ENST00000264932.6:c.205G>A	p.Ala69Thr	p.A69T	ENST00000264932	NM_004168.2	69	Gct/Act																																																																														
MRE11A	0	MSKCC	GRCh37	11	94209542	94209542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746932208		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	37	274	0	ENST00000323929.3:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000323929	NM_005591.3	191	cGa/cAa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273209	115273209	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs990081919		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	45	569	0	ENST00000438362.2:c.1249C>T	p.Arg417Cys	p.R417C	ENST00000438362	NM_001242891.1	417	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285173	212285173	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754420079		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	19	437	0	ENST00000342788.4:c.3128C>T	p.Ser1043Leu	p.S1043L	ENST00000342788	NM_005235.2	1043	tCg/tTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66233141	66233141	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs146757388		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	133	402	0	ENST00000273854.3:c.1858C>T	p.Arg620Trp	p.R620W	ENST00000273854	NM_004439.5	620	Cgg/Tgg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12422908	12422908	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267599576		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	51	657	0	ENST00000287820.6:c.398C>T	p.Ser133Phe	p.S133F	ENST00000287820	NM_015869.4	133	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29652995	29652996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	32	543	0	ENST00000358273.4:c.4998dup	p.Pro1667SerfsTer15	p.P1667Sfs*15	ENST00000358273	NM_001042492.2	1665	gtt/gTtt																																																																														
RAF1	5894	MSKCC	GRCh37	3	12653459	12653459	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs896491732		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	121	424	0	ENST00000251849.4:c.310G>A	p.Glu104Lys	p.E104K	ENST00000251849	NM_002880.3	104	Gaa/Aaa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5066740	5066740	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777015472		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	103	339	0	ENST00000381652.3:c.1277G>A	p.Arg426Gln	p.R426Q	ENST00000381652	NM_004972.3	426	cGa/cAa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39237759	39237759	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	46	348	0	ENST00000402219.2:c.2476C>T	p.Arg826Ter	p.R826*	ENST00000402219	NM_005633.3	826	Cga/Tga																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316076	14316076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782490571		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	82	287	0	ENST00000256196.4:c.349C>T	p.Arg117Cys	p.R117C	ENST00000256196		117	Cgt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133252328	133252328	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	177	501	0	ENST00000320574.5:c.1099T>G	p.Phe367Val	p.F367V	ENST00000320574	NM_006231.2	367	Ttt/Gtt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39638012	39638012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs893280651		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	143	621	1	ENST00000262039.4:c.2429G>A	p.Arg810Gln	p.R810Q	ENST00000262039	NM_002647.2	810	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026124	48026124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	109	388	0	ENST00000234420.5:c.1002G>T	p.Lys334Asn	p.K334N	ENST00000234420	NM_000179.2	334	aaG/aaT																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99808294	99808294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	31	387	1	ENST00000280892.6:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000280892	NM_001130678.1	132	cGa/cAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426771	212426771	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs879060634		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	167	524	0	ENST00000342788.4:c.2344C>T	p.Arg782Trp	p.R782W	ENST00000342788	NM_005235.2	782	Cgg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271637	15271637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs996150018		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	86	1106	0	ENST00000263388.2:c.6802G>A	p.Glu2268Lys	p.E2268K	ENST00000263388	NM_000435.2	2268	Gaa/Aaa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17951109	17951109	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143038064		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	84	784	1	ENST00000458235.1:c.1184G>A	p.Arg395His	p.R395H	ENST00000458235	NM_000215.3	395	cGt/cAt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120469211	120469211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116408209		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	63	538	0	ENST00000256646.2:c.3916G>A	p.Asp1306Asn	p.D1306N	ENST00000256646	NM_024408.3	1306	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934623	9934623	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267604688		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	140	411	0	ENST00000330684.3:c.1532C>T	p.Ser511Leu	p.S511L	ENST00000330684	NM_001134407.1	511	tCg/tTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176430	123176430	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150057715		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	34	236	0	ENST00000218089.9:c.397G>A	p.Ala133Thr	p.A133T	ENST00000218089	NM_001042749.1	133	Gca/Aca																																																																														
ATM	472	MSKCC	GRCh37	11	108150232	108150232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189445371		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	38	437	0	ENST00000278616.4:c.3299C>T	p.Thr1100Met	p.T1100M	ENST00000278616	NM_000051.3	1100	aCg/aTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797271	135797271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs118203410		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	23	307	0	ENST00000298552.3:c.598G>A	p.Val200Ile	p.V200I	ENST00000298552	NM_001162426.1	200	Gtc/Atc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916551	39916551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	200	751	0	ENST00000378444.4:c.4452G>T	p.Glu1484Asp	p.E1484D	ENST00000378444	NM_001123385.1	1484	gaG/gaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710875	117710875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140178288		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	59	446	0	ENST00000368508.3:c.1397G>A	p.Arg466Gln	p.R466Q	ENST00000368508	NM_002944.2	466	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662453	67662453	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs879255516		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	112	644	0	ENST00000264010.4:c.1699C>T	p.Arg567Trp	p.R567W	ENST00000264010	NM_006565.3	567	Cgg/Tgg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740231	162740231	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773598662		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	119	531	0	ENST00000367921.3:c.1433G>A	p.Arg478His	p.R478H	ENST00000367921	NM_006182.2	478	cGc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880126	151880126	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146495785		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	140	401	0	ENST00000262189.6:c.5198C>T	p.Ser1733Leu	p.S1733L	ENST00000262189	NM_170606.2	1733	tCg/tTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342932	118342932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	92	388	0	ENST00000534358.1:c.1058G>A	p.Arg353Gln	p.R353Q	ENST00000534358	NM_005933.3	353	cGa/cAa																																																																														
PARK2	0	MSKCC	GRCh37	6	162683754	162683754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	169	503	0	ENST00000366898.1:c.215G>T	p.Arg72Ile	p.R72I	ENST00000366898	NM_004562.2	72	aGa/aTa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118806	115118806	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754023417		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	72	573	0	ENST00000257566.3:c.535G>A	p.Glu179Lys	p.E179K	ENST00000257566	NM_016569.3	179	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112178633	112178633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	39	388	0	ENST00000257430.4:c.7342C>T	p.Pro2448Ser	p.P2448S	ENST00000257430	NM_000038.5	2448	Cca/Tca																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893590	28893590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752645756		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	35	443	0	ENST00000282397.4:c.3256G>A	p.Gly1086Arg	p.G1086R	ENST00000282397	NM_002019.4	1086	Gga/Aga																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867575	45867575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777291413		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	286	972	1	ENST00000391945.4:c.733G>A	p.Asp245Asn	p.D245N	ENST00000391945	NM_000400.3	245	Gac/Aac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390715	118390715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	114	402	0	ENST00000534358.1:c.11365C>T	p.Arg3789Cys	p.R3789C	ENST00000534358	NM_005933.3	3789	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443481	49443481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781156556		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	40	558	0	ENST00000301067.7:c.3890G>A	p.Arg1297His	p.R1297H	ENST00000301067	NM_003482.3	1297	cGt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879486	151879486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	157	452	0	ENST00000262189.6:c.5459C>T	p.Ser1820Phe	p.S1820F	ENST00000262189	NM_170606.2	1820	tCt/tTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55240761	55240761	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1231769201		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	70	887	1	ENST00000275493.2:c.2005C>T	p.Arg669Ter	p.R669*	ENST00000275493	NM_005228.3	669	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591007	67591007	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	56	221	1	ENST00000274335.5:c.1600C>T	p.Arg534Ter	p.R534*	ENST00000274335		534	Cga/Tga																																																																														
CASP8	841	MSKCC	GRCh37	2	202131315	202131315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	124	491	1	ENST00000358485.4:c.283G>T	p.Glu95Ter	p.E95*	ENST00000358485	NM_001080125.1	95	Gaa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877425	40877425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	45	607	0	ENST00000373198.4:c.2271G>T	p.Glu757Asp	p.E757D	ENST00000373198	NM_133170.3	757	gaG/gaT																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143130067	143130067	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	128	385	0	ENST00000262992.4:c.949G>T	p.Glu317Ter	p.E317*	ENST00000262992	NM_001101669.1	317	Gaa/Taa																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119666149	119666149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762056483		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	26	390	1	ENST00000316626.5:c.332G>A	p.Arg111Gln	p.R111Q	ENST00000316626		111	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879228	151879228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200152380		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	138	512	0	ENST00000262189.6:c.5717G>A	p.Arg1906Gln	p.R1906Q	ENST00000262189	NM_170606.2	1906	cGa/cAa																																																																														
RB1	5925	MSKCC	GRCh37	13	49033865	49033865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369755801		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	64	450	0	ENST00000267163.4:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000267163	NM_000321.2	668	Cgc/Tgc																																																																														
AR	367	MSKCC	GRCh37	X	66766259	66766259	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs780162524		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	129	564	0	ENST00000374690.3:c.1271C>A	p.Ser424Tyr	p.S424Y	ENST00000374690	NM_000044.3	424	tCt/tAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52705261	52705261	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770424653		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	42	568	0	ENST00000322088.6:c.143G>A	p.Arg48Gln	p.R48Q	ENST00000322088	NM_014225.5	48	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952012	178952012	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	74	398	0	ENST00000263967.3:c.3067C>T	p.Arg1023Ter	p.R1023*	ENST00000263967	NM_006218.2	1023	Cga/Tga																																																																														
SESN3	143686	MSKCC	GRCh37	11	94918482	94918482	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368962287		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	103	506	1	ENST00000536441.1:c.700G>A	p.Val234Ile	p.V234I	ENST00000536441	NM_144665.3	234	Gtt/Att																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026513	6026513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780044		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	60	705	1	ENST00000265849.7:c.1883G>A	p.Arg628Gln	p.R628Q	ENST00000265849	NM_000535.5	628	cGa/cAa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368470	225368470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	44	290	0	ENST00000264414.4:c.1276G>T	p.Asp426Tyr	p.D426Y	ENST00000264414	NM_003590.4	426	Gat/Tat																																																																														
NUF2	83540	MSKCC	GRCh37	1	163313548	163313548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	12	165	0	ENST00000271452.3:c.695C>A	p.Ser232Tyr	p.S232Y	ENST00000271452	NM_145697.2	232	tCt/tAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266472	41266472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	32	446	0	ENST00000349496.5:c.269G>A	p.Arg90Gln	p.R90Q	ENST00000349496	NM_001904.3	90	cGa/cAa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245683	41245683	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56039126		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	44	631	2	ENST00000357654.3:c.1865C>T	p.Ala622Val	p.A622V	ENST00000357654	NM_007294.3	622	gCg/gTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17937713	17937713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752088869		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	49	560	0	ENST00000458235.1:c.3214G>A	p.Glu1072Lys	p.E1072K	ENST00000458235	NM_000215.3	1072	Gag/Aag																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074431	8074431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	99	371	0	ENST00000377482.5:c.228G>T	p.Met76Ile	p.M76I	ENST00000377482	NM_018948.3	76	atG/atT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255380	16255380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368635957		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	86	564	1	ENST00000375759.3:c.2645G>A	p.Arg882Gln	p.R882Q	ENST00000375759	NM_015001.2	882	cGa/cAa																																																																														
SDHB	6390	MSKCC	GRCh37	1	17354346	17354346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	20	344	0	ENST00000375499.3:c.438C>A	p.Phe146Leu	p.F146L	ENST00000375499	NM_003000.2	146	ttC/ttA																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363634	40363634	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	34	442	0	ENST00000397332.2:c.595G>T	p.Glu199Ter	p.E199*	ENST00000397332	NM_001033082.2	199	Gaa/Taa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65313318	65313318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	180	548	0	ENST00000342505.4:c.1796C>A	p.Ser599Tyr	p.S599Y	ENST00000342505	NM_002227.2	599	tCt/tAt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115262316	115262317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	124	442	1	ENST00000438362.2:c.2237dup	p.His747ProfsTer10	p.H747Pfs*10	ENST00000438362	NM_001242891.1	746	ttc/ttTc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273248	115273248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	152	493	0	ENST00000438362.2:c.1210G>T	p.Asp404Tyr	p.D404Y	ENST00000438362	NM_001242891.1	404	Gat/Tat																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458503	120458503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	74	687	0	ENST00000256646.2:c.6842G>A	p.Gly2281Asp	p.G2281D	ENST00000256646	NM_024408.3	2281	gGc/gAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120497808	120497808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782169028		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	41	661	0	ENST00000256646.2:c.2074C>T	p.Arg692Cys	p.R692C	ENST00000256646	NM_024408.3	692	Cgc/Tgc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851339	156851339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760974854		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	243	848	0	ENST00000524377.1:c.2296C>T	p.Arg766Trp	p.R766W	ENST00000524377	NM_002529.3	766	Cgg/Tgg																																																																														
RFWD2	0	MSKCC	GRCh37	1	175956116	175956116	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	133	421	0	ENST00000367669.3:c.2096T>G	p.Phe699Cys	p.F699C	ENST00000367669	NM_022457.5	699	tTt/tGt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193091441	193091441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	124	513	0	ENST00000367435.3:c.111G>T	p.Lys37Asn	p.K37N	ENST00000367435	NM_024529.4	37	aaG/aaT																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248646	8248646	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	153	629	0	ENST00000335790.3:c.241C>T	p.Leu81Phe	p.L81F	ENST00000335790	NM_002315.2	81	Ctc/Ttc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14300921	14300921	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	36	314	0	ENST00000256196.4:c.577G>T	p.Glu193Ter	p.E193*	ENST00000256196		193	Gaa/Taa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625289	69625289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	250	910	2	ENST00000334134.2:c.504G>T	p.Lys168Asn	p.K168N	ENST00000334134	NM_005247.2	168	aaG/aaT																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940165	71940165	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747330824		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	52	893	1	ENST00000298229.2:c.550G>A	p.Asp184Asn	p.D184N	ENST00000298229	NM_001567.3	184	Gac/Aac																																																																														
SESN3	143686	MSKCC	GRCh37	11	94918463	94918463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	124	522	0	ENST00000536441.1:c.719A>G	p.Asp240Gly	p.D240G	ENST00000536441	NM_144665.3	240	gAc/gGc																																																																														
ATM	472	MSKCC	GRCh37	11	108236197	108236197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	172	595	0	ENST00000278616.4:c.9133C>T	p.Leu3045Phe	p.L3045F	ENST00000278616	NM_000051.3	3045	Ctc/Ttc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118380737	118380737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	125	454	0	ENST00000534358.1:c.10975C>T	p.Arg3659Trp	p.R3659W	ENST00000534358	NM_005933.3	3659	Cgg/Tgg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390416	118390416	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520053		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	216	598	0	ENST00000534358.1:c.11230C>T	p.Arg3744Ter	p.R3744*	ENST00000534358	NM_005933.3	3744	Cga/Tga																																																																														
CBL	867	MSKCC	GRCh37	11	119103264	119103264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	177	547	0	ENST00000264033.4:c.302G>A	p.Arg101Lys	p.R101K	ENST00000264033	NM_005188.3	101	aGa/aAa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	430229	430229	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	31	402	0	ENST00000399788.2:c.2473G>T	p.Glu825Ter	p.E825*	ENST00000399788	NM_001042603.1	825	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	459933	459933	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	142	538	0	ENST00000399788.2:c.1162G>T	p.Glu388Ter	p.E388*	ENST00000399788	NM_001042603.1	388	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	464397	464397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746045026		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	80	532	1	ENST00000399788.2:c.797G>A	p.Arg266Gln	p.R266Q	ENST00000399788	NM_001042603.1	266	cGa/cAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800831	18800831	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	89	318	0	ENST00000266497.5:c.4207G>T	p.Glu1403Ter	p.E1403*	ENST00000266497		1403	Gag/Tag																																																																														
MDM2	4193	MSKCC	GRCh37	12	69229696	69229696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	33	392	0	ENST00000462284.1:c.772G>A	p.Glu258Lys	p.E258K	ENST00000462284	NM_002392.5	258	Gaa/Aaa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233415	69233415	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	42	387	0	ENST00000462284.1:c.1280A>G	p.Asp427Gly	p.D427G	ENST00000462284	NM_002392.5	427	gAc/gGc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112131	115112131	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772620679		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	64	830	0	ENST00000257566.3:c.1609G>A	p.Ala537Thr	p.A537T	ENST00000257566	NM_016569.3	537	Gct/Act																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578239	28578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	152	601	0	ENST00000241453.7:c.2932G>T	p.Glu978Ter	p.E978*	ENST00000241453	NM_004119.2	978	Gag/Tag																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609667	28609667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	156	584	0	ENST00000241453.7:c.1562G>A	p.Gly521Asp	p.G521D	ENST00000241453	NM_004119.2	521	gGc/gAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48936957	48936957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	94	366	1	ENST00000267163.4:c.725C>T	p.Ala242Val	p.A242V	ENST00000267163	NM_000321.2	242	gCt/gTt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434632	110434632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs940747787		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	109	824	1	ENST00000375856.3:c.3769G>A	p.Asp1257Asn	p.D1257N	ENST00000375856	NM_003749.2	1257	Gac/Aac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061691	38061691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754265844		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	121	445	0	ENST00000250448.2:c.298G>A	p.Gly100Ser	p.G100S	ENST00000250448	NM_004496.3	100	Ggc/Agc																																																																														
MGA	23269	MSKCC	GRCh37	15	41961791	41961791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	136	416	0	ENST00000219905.7:c.699C>A	p.Phe233Leu	p.F233L	ENST00000219905	NM_001164273.1	233	ttC/ttA																																																																														
MGA	23269	MSKCC	GRCh37	15	42003099	42003099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	175	671	0	ENST00000219905.7:c.2636C>T	p.Ser879Phe	p.S879F	ENST00000219905	NM_001164273.1	879	tCc/tTc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749417	43749417	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	91	304	0	ENST00000382044.4:c.1390-1G>T		p.X464_splice	ENST00000382044	NM_001141980.1	464																																																																															
CD276	80381	MSKCC	GRCh37	15	73995362	73995362	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763918983		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	41	413	1	ENST00000318443.5:c.668G>A	p.Arg223His	p.R223H	ENST00000318443	NM_001024736.1	223	cGc/cAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88671957	88671957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs574695821		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	69	286	0	ENST00000360948.2:c.1213G>A	p.Asp405Asn	p.D405N	ENST00000360948	NM_001012338.2	405	Gat/Aat																																																																														
BLM	641	MSKCC	GRCh37	15	91341429	91341429	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	21	241	0	ENST00000355112.3:c.3220A>G	p.Thr1074Ala	p.T1074A	ENST00000355112	NM_000057.2	1074	Aca/Gca																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250862	99250862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	145	537	2	ENST00000268035.6:c.166G>A	p.Glu56Lys	p.E56K	ENST00000268035	NM_000875.3	56	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858021	9858021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	57	587	0	ENST00000330684.3:c.3380G>A	p.Gly1127Asp	p.G1127D	ENST00000330684	NM_001134407.1	1127	gGt/gAt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041854	14041854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	105	445	0	ENST00000311895.7:c.2401C>A	p.Leu801Ile	p.L801I	ENST00000311895	NM_005236.2	801	Ctc/Atc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832515	72832515	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	132	421	0	ENST00000268489.5:c.4066G>T	p.Glu1356Ter	p.E1356*	ENST00000268489	NM_006885.3	1356	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993190	72993190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	280	942	0	ENST00000268489.5:c.855C>A	p.Phe285Leu	p.F285L	ENST00000268489	NM_006885.3	285	ttC/ttA																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819766	81819766	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766974268		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	170	603	1	ENST00000359376.3:c.172G>A	p.Ala58Thr	p.A58T	ENST00000359376	NM_002661.3	58	Gct/Act																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942021	81942021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	117	434	0	ENST00000359376.3:c.1558G>A	p.Asp520Asn	p.D520N	ENST00000359376	NM_002661.3	520	Gat/Aat																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11984773	11984773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	54	424	0	ENST00000353533.5:c.319G>A	p.Glu107Lys	p.E107K	ENST00000353533	NM_003010.3	107	Gaa/Aaa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40870628	40870628	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	197	590	0	ENST00000428826.2:c.775G>T	p.Glu259Ter	p.E259*	ENST00000428826		259	Gaa/Taa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246842	41246842	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	51	388	0	ENST00000357654.3:c.706A>G	p.Thr236Ala	p.T236A	ENST00000357654	NM_007294.3	236	Act/Gct																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740721	58740721	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	91	627	0	ENST00000305921.3:c.1626T>G	p.Asn542Lys	p.N542K	ENST00000305921	NM_003620.3	542	aaT/aaG																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760889	59760889	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	173	411	0	ENST00000259008.2:c.3518T>G	p.Ile1173Ser	p.I1173S	ENST00000259008	NM_032043.2	1173	aTt/aGt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59853769	59853769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	51	359	1	ENST00000259008.2:c.2090C>A	p.Ser697Tyr	p.S697Y	ENST00000259008	NM_032043.2	697	tCt/tAt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533730	63533730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	41	630	0	ENST00000307078.5:c.1424C>T	p.Ser475Leu	p.S475L	ENST00000307078	NM_004655.3	475	tCg/tTg																																																																														
YES1	7525	MSKCC	GRCh37	18	743020	743020	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	168	489	0	ENST00000314574.4:c.958G>T	p.Glu320Ter	p.E320*	ENST00000314574	NM_005433.3	320	Gaa/Taa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39537620	39537620	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	64	362	0	ENST00000262039.4:c.154G>T	p.Glu52Ter	p.E52*	ENST00000262039	NM_002647.2	52	Gag/Tag																																																																														
INSR	3643	MSKCC	GRCh37	19	7122718	7122718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	277	869	0	ENST00000302850.5:c.3436G>A	p.Gly1146Arg	p.G1146R	ENST00000302850	NM_000208.2	1146	Ggg/Agg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302271	15302271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	287	815	1	ENST00000263388.2:c.1000G>A	p.Ala334Thr	p.A334T	ENST00000263388	NM_000435.2	334	Gct/Act																																																																														
BRD4	23476	MSKCC	GRCh37	19	15364975	15364975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	48	517	0	ENST00000263377.2:c.2146G>T	p.Asp716Tyr	p.D716Y	ENST00000263377	NM_058243.2	716	Gac/Tac																																																																														
AXL	558	MSKCC	GRCh37	19	41765718	41765718	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751040564		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	84	649	0	ENST00000301178.4:c.2594G>A	p.Arg865His	p.R865H	ENST00000301178	NM_021913.4	865	cGc/cAc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867361	45867361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	244	788	0	ENST00000391945.4:c.832G>A	p.Glu278Lys	p.E278K	ENST00000391945	NM_000400.3	278	Gag/Aag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25973053	25973053	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	127	510	0	ENST00000435504.4:c.1372T>A	p.Ser458Thr	p.S458T	ENST00000435504		458	Tcc/Acc																																																																														
ALK	238	MSKCC	GRCh37	2	29940498	29940498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	142	528	0	ENST00000389048.3:c.733C>A	p.Leu245Ile	p.L245I	ENST00000389048	NM_004304.4	245	Ctc/Atc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48025925	48025925	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	112	387	0	ENST00000234420.5:c.803A>G	p.Asp268Gly	p.D268G	ENST00000234420	NM_000179.2	268	gAc/gGc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61711179	61711179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	36	586	0	ENST00000401558.2:c.2570C>A	p.Ser857Tyr	p.S857Y	ENST00000401558	NM_003400.3	857	tCt/tAt																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96920731	96920731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	142	416	0	ENST00000258439.3:c.249C>A	p.Phe83Leu	p.F83L	ENST00000258439	NM_001193304.2	83	ttC/ttA																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047330	128047330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	164	542	0	ENST00000285398.2:c.592C>T	p.Arg198Cys	p.R198C	ENST00000285398	NM_000122.1	198	Cgc/Tgc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198272762	198272762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	114	611	0	ENST00000335508.6:c.1199C>A	p.Ser400Tyr	p.S400Y	ENST00000335508	NM_012433.2	400	tCt/tAt																																																																														
BARD1	580	MSKCC	GRCh37	2	215593720	215593720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	92	298	0	ENST00000260947.4:c.2014T>C	p.Phe672Leu	p.F672L	ENST00000260947	NM_000465.2	672	Ttt/Ctt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660315	227660315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	43	572	0	ENST00000305123.5:c.3140C>T	p.Pro1047Leu	p.P1047L	ENST00000305123	NM_005544.2	1047	cCt/cTt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662424	227662424	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752842091		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	73	704	0	ENST00000305123.5:c.1031G>A	p.Gly344Asp	p.G344D	ENST00000305123	NM_005544.2	344	gGc/gAc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663168	227663168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	206	740	3	ENST00000305123.5:c.287C>T	p.Ala96Val	p.A96V	ENST00000305123	NM_005544.2	96	gCg/gTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019159	31019159	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1298870586		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	189	583	0	ENST00000375687.4:c.754T>G	p.Phe252Val	p.F252V	ENST00000375687	NM_015338.5	252	Ttt/Gtt																																																																														
TOP1	7150	MSKCC	GRCh37	20	39745033	39745033	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	65	541	1	ENST00000361337.2:c.1822+1G>A		p.X608_splice	ENST00000361337	NM_003286.2	608																																																																															
TOP1	7150	MSKCC	GRCh37	20	39746856	39746856	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	126	380	0	ENST00000361337.2:c.1870C>T	p.Arg624Ter	p.R624*	ENST00000361337	NM_003286.2	624	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727188	40727188	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	105	552	0	ENST00000373198.4:c.3776A>G	p.His1259Arg	p.H1259R	ENST00000373198	NM_133170.3	1259	cAc/cGc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46255782	46255782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	48	436	0	ENST00000371998.3:c.394G>A	p.Gly132Arg	p.G132R	ENST00000371998		132	Gga/Aga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485083	57485083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	120	449	1	ENST00000371085.3:c.917C>T	p.Ser306Leu	p.S306L	ENST00000371085	NM_000516.4	306	tCg/tTg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171612	36171612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	47	306	0	ENST00000300305.3:c.953C>T	p.Ser318Phe	p.S318F	ENST00000300305		318	tCc/tTc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22153321	22153321	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	31	500	0	ENST00000215832.6:c.589G>T	p.Glu197Ter	p.E197*	ENST00000215832	NM_002745.4	197	Gaa/Taa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130706	29130706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	54	417	0	ENST00000328354.6:c.4T>C	p.Ser2Pro	p.S2P	ENST00000328354	NM_007194.3	2	Tct/Cct																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729963	30729963	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1305853447		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	43	445	1	ENST00000359013.4:c.1559G>A	p.Arg520Gln	p.R520Q	ENST00000359013	NM_001024847.2	520	cGa/cAa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070327	37070327	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	33	474	0	ENST00000231790.2:c.1462A>G	p.Lys488Glu	p.K488E	ENST00000231790	NM_000249.3	488	Aag/Gag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41279520	41279520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	44	428	0	ENST00000349496.5:c.2090G>A	p.Gly697Glu	p.G697E	ENST00000349496	NM_001904.3	697	gGa/gAa																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427681	72427681	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772981068		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	95	401	0	ENST00000477973.2:c.807C>T	p.Ser270Leu	p.S270L	ENST00000477973	NM_012234.5	270	tCg/tTg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799463	72799463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	65	733	0	ENST00000325599.8:c.1706G>T	p.Arg569Ile	p.R569I	ENST00000325599	NM_018130.2	569	aGa/aTa																																																																														
ATR	545	MSKCC	GRCh37	3	142242907	142242907	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	81	529	0	ENST00000350721.4:c.4080A>C	p.Glu1360Asp	p.E1360D	ENST00000350721	NM_001184.3	1360	gaA/gaC																																																																														
ATR	545	MSKCC	GRCh37	3	142268391	142268391	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	101	333	0	ENST00000350721.4:c.3101A>C	p.Lys1034Thr	p.K1034T	ENST00000350721	NM_001184.3	1034	aAa/aCa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169953103	169953103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757899632		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	166	485	0	ENST00000295797.4:c.187G>A	p.Glu63Lys	p.E63K	ENST00000295797	NM_002740.5	63	Gaa/Aaa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169977795	169977795	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	241	536	0	ENST00000295797.4:c.262G>T	p.Glu88Ter	p.E88*	ENST00000295797	NM_002740.5	88	Gaa/Taa																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430440	181430440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	138	885	2	ENST00000325404.1:c.292C>T	p.Arg98Ter	p.R98*	ENST00000325404	NM_003106.3	98	Cga/Tga																																																																														
TP63	8626	MSKCC	GRCh37	3	189604293	189604293	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781366519		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	191	482	1	ENST00000264731.3:c.1460G>A	p.Arg487His	p.R487H	ENST00000264731	NM_003722.4	487	cGc/cAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55592185	55592185	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	53	498	0	ENST00000288135.5:c.1509T>A	p.Tyr503Ter	p.Y503*	ENST00000288135	NM_000222.2	503	taT/taA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230917	66230917	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	16	281	0	ENST00000273854.3:c.2054A>C	p.Glu685Ala	p.E685A	ENST00000273854	NM_004439.5	685	gAa/gCa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467556	66467556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147719164		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	70	348	0	ENST00000273854.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000273854	NM_004439.5	238	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557209	187557209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	160	574	0	ENST00000441802.2:c.4153C>T	p.Pro1385Ser	p.P1385S	ENST00000441802	NM_005245.3	1385	Cct/Tct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629372	187629372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	109	772	0	ENST00000441802.2:c.1610G>T	p.Arg537Met	p.R537M	ENST00000441802	NM_005245.3	537	aGg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112178100	112178100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	41	410	0	ENST00000257430.4:c.6809C>A	p.Ser2270Tyr	p.S2270Y	ENST00000257430	NM_000038.5	2270	tCt/tAt																																																																														
NPM1	4869	MSKCC	GRCh37	5	170834711	170834711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	42	352	0	ENST00000296930.5:c.779C>A	p.Ser260Tyr	p.S260Y	ENST00000296930	NM_002520.6	260	tCt/tAt																																																																														
IRF4	3662	MSKCC	GRCh37	6	394929	394929	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	65	546	0	ENST00000380956.4:c.325G>T	p.Glu109Ter	p.E109*	ENST00000380956	NM_001195286.1	109	Gaa/Taa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20488377	20488377	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321986801		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	65	515	1	ENST00000346618.3:c.1033C>T	p.Pro345Ser	p.P345S	ENST00000346618	NM_001949.4	345	Ccc/Tcc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32171942	32171942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	70	474	0	ENST00000375023.3:c.3090C>A	p.Phe1030Leu	p.F1030L	ENST00000375023	NM_004557.3	1030	ttC/ttA																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64288417	64288417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	19	241	0	ENST00000370651.3:c.181G>A	p.Glu61Lys	p.E61K	ENST00000370651	NM_003463.4	61	Gaa/Aaa																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64290033	64290033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779059610		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	140	523	0	ENST00000370651.3:c.476G>A	p.Arg159His	p.R159H	ENST00000370651	NM_003463.4	159	cGt/cAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94129005	94129005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	45	428	1	ENST00000369303.4:c.55C>T	p.Leu19Phe	p.L19F	ENST00000369303	NM_004440.3	19	Ctc/Ttc																																																																														
FYN	2534	MSKCC	GRCh37	6	112015677	112015677	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs751647014		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	36	482	0	ENST00000368678.4:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000368678		389	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663590	117663590	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	87	472	0	ENST00000368508.3:c.4642G>T	p.Glu1548Ter	p.E1548*	ENST00000368508	NM_002944.2	1548	Gag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663677	117663677	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	17	215	0	ENST00000368508.3:c.4555G>T	p.Asp1519Tyr	p.D1519Y	ENST00000368508	NM_002944.2	1519	Gat/Tat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117680986	117680986	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780046038		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	96	351	0	ENST00000368508.3:c.3634C>T	p.Arg1212Cys	p.R1212C	ENST00000368508	NM_002944.2	1212	Cgc/Tgc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157510835	157510835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	62	743	1	ENST00000346085.5:c.3610G>A	p.Ala1204Thr	p.A1204T	ENST00000346085	NM_020732.3	1204	Gca/Aca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979561	2979561	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	54	369	0	ENST00000396946.4:c.686T>G	p.Ile229Ser	p.I229S	ENST00000396946	NM_032415.4	229	aTc/aGc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508776	106508776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	174	570	0	ENST00000359195.3:c.770C>A	p.Ser257Tyr	p.S257Y	ENST00000359195	NM_002649.2	257	tCt/tAt																																																																														
MET	4233	MSKCC	GRCh37	7	116339981	116339981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	99	397	0	ENST00000397752.3:c.843C>A	p.Phe281Leu	p.F281L	ENST00000397752	NM_000245.2	281	ttC/ttA																																																																														
MET	4233	MSKCC	GRCh37	7	116411568	116411568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	27	357	0	ENST00000397752.3:c.2747C>A	p.Ser916Tyr	p.S916Y	ENST00000397752	NM_000245.2	916	tCt/tAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874407	151874407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	21	379	0	ENST00000262189.6:c.8131G>T	p.Asp2711Tyr	p.D2711Y	ENST00000262189	NM_170606.2	2711	Gac/Tac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945601	151945601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770827883		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	28	341	0	ENST00000262189.6:c.1918G>A	p.Glu640Lys	p.E640K	ENST00000262189	NM_170606.2	640	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058450	69058450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	19	372	0	ENST00000288368.4:c.4094C>A	p.Pro1365His	p.P1365H	ENST00000288368	NM_024870.2	1365	cCt/cAt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566378	141566378	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	20	333	0	ENST00000220592.5:c.1034A>G	p.Asn345Ser	p.N345S	ENST00000220592	NM_012154.3	345	aAc/aGc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141572576	141572576	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	57	608	0	ENST00000220592.5:c.494T>C	p.Val165Ala	p.V165A	ENST00000220592	NM_012154.3	165	gTc/gCc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080332	5080332	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	82	312	0	ENST00000381652.3:c.2235A>C	p.Glu745Asp	p.E745D	ENST00000381652	NM_004972.3	745	gaA/gaC																																																																														
CD274	29126	MSKCC	GRCh37	9	5465546	5465546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	20	293	0	ENST00000381577.3:c.730C>A	p.Leu244Met	p.L244M	ENST00000381577	NM_014143.3	244	Ctg/Atg																																																																														
TEK	7010	MSKCC	GRCh37	9	27206782	27206782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	33	515	0	ENST00000380036.4:c.2567G>T	p.Arg856Ile	p.R856I	ENST00000380036	NM_000459.3	856	aGa/aTa																																																																														
TEK	7010	MSKCC	GRCh37	9	27213590	27213590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	52	463	0	ENST00000380036.4:c.2986A>G	p.Thr996Ala	p.T996A	ENST00000380036	NM_000459.3	996	Aca/Gca																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409478	80409478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	35	465	0	ENST00000286548.4:c.636G>T	p.Glu212Asp	p.E212D	ENST00000286548	NM_002072.3	212	gaG/gaT																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128321916	128321916	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	154	551	0	ENST00000265960.3:c.844C>T	p.Arg282Ter	p.R282*	ENST00000265960	NM_001006617.1	282	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139438491	139438491	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754666783		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	134	975	2	ENST00000277541.6:c.125G>A	p.Gly42Asp	p.G42D	ENST00000277541	NM_017617.3	42	gGc/gAc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793347	139793347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	49	689	1	ENST00000247668.2:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000247668	NM_021138.3	52	cGg/cAg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317500	1317500	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	109	807	0				ENST00000381566																																																																																	
BCOR	54880	MSKCC	GRCh37	X	39934198	39934198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	225	819	1	ENST00000378444.4:c.401C>T	p.Ala134Val	p.A134V	ENST00000378444	NM_001123385.1	134	gCt/gTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934211	39934211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1457205832		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	53	780	2	ENST00000378444.4:c.388G>A	p.Glu130Lys	p.E130K	ENST00000378444	NM_001123385.1	130	Gag/Aag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040911	47040911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	59	930	0	ENST00000329236.7:c.1207G>A	p.Glu403Lys	p.E403K	ENST00000329236	NM_001204466.1	403	Gag/Aag																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650311	48650311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	179	804	0	ENST00000376670.3:c.281C>T	p.Ala94Val	p.A94V	ENST00000376670	NM_002049.3	94	gCc/gTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411275	63411275	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773684332		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	105	853	2	ENST00000330258.3:c.1892G>A	p.Arg631Gln	p.R631Q	ENST00000330258	NM_152424.3	631	cGa/cAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412448	63412448	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1470153305		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	249	956	0	ENST00000330258.3:c.719C>A	p.Ser240Tyr	p.S240Y	ENST00000330258	NM_152424.3	240	tCt/tAt																																																																														
AR	367	MSKCC	GRCh37	X	66931522	66931522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137852583		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	189	638	1	ENST00000374690.3:c.2164G>A	p.Ala722Thr	p.A722T	ENST00000374690	NM_000044.3	722	Gcc/Acc																																																																														
MED12	9968	MSKCC	GRCh37	X	70344943	70344943	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	240	769	0	ENST00000374080.3:c.2173C>A	p.Leu725Ile	p.L725I	ENST00000374080		725	Ctt/Att																																																																														
MED12	9968	MSKCC	GRCh37	X	70357641	70357642	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	234	941	0	ENST00000374080.3:c.5898dup	p.Ser1967GlnfsTer84	p.S1967Qfs*84	ENST00000374080		1964	-/C																																																																														
ATRX	546	MSKCC	GRCh37	X	76931740	76931740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782344877		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	149	392	0	ENST00000373344.5:c.3790G>A	p.Asp1264Asn	p.D1264N	ENST00000373344	NM_000489.3	1264	Gac/Aac																																																																														
ATRX	546	MSKCC	GRCh37	X	76938221	76938221	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	73	547	0	ENST00000373344.5:c.2527A>C	p.Asn843His	p.N843H	ENST00000373344	NM_000489.3	843	Aat/Cat																																																																														
ATRX	546	MSKCC	GRCh37	X	76939872	76939872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	29	477	0	ENST00000373344.5:c.876G>T	p.Gln292His	p.Q292H	ENST00000373344	NM_000489.3	292	caG/caT																																																																														
XIAP	331	MSKCC	GRCh37	X	123025125	123025125	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs779388079		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	23	190	0	ENST00000355640.3:c.1015A>G	p.Ile339Val	p.I339V	ENST00000355640		339	Ata/Gta																																																																														
STAG2	10735	MSKCC	GRCh37	X	123164929	123164929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	76	328	1	ENST00000218089.9:c.242A>G	p.Asn81Ser	p.N81S	ENST00000218089	NM_001042749.1	81	aAc/aGc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518144	8518144	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1158240950		P-0042199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	34	447	0	ENST00000356435.5:c.1247C>T	p.Ala416Val	p.A416V	ENST00000356435		416	gCa/gTa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94203677	94203677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	63	331	0	ENST00000323929.3:c.977C>G	p.Pro326Arg	p.P326R	ENST00000323929	NM_005591.3	326	cCt/cGt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23625376	23625376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	148	681	0	ENST00000261584.4:c.3150C>A	p.His1050Gln	p.H1050Q	ENST00000261584	NM_024675.3	1050	caC/caA																																																																														
SOS1	6654	MSKCC	GRCh37	2	39347481	39347481	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057517867		P-0042230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	132	534	0	ENST00000402219.2:c.83A>G	p.Lys28Arg	p.K28R	ENST00000402219	NM_005633.3	28	aAa/aGa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440924	52440924	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0042230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	150	662	0	ENST00000460680.1:c.581-1G>A		p.X194_splice	ENST00000460680	NM_004656.3	194																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149243900	149243900	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	176	631	0	ENST00000360632.3:c.918T>G	p.His306Gln	p.H306Q	ENST00000360632	NM_015472.4	306	caT/caG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	335	432	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
MPL	4352	MSKCC	GRCh37	1	43817892	43817892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	137	318	1	ENST00000372470.3:c.1571T>C	p.Leu524Pro	p.L524P	ENST00000372470	NM_005373.2	524	cTg/cCg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912189	114912189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867720073		P-0042252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	291	317	2	ENST00000543371.1:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000543371	NM_001198531.1	420	cGg/cAg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060802	38060826	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGAGTAGTGGGGGTCCCCTTTCA	AAGGAGTAGTGGGGGTCCCCTTTCA	-			P-0042252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	191	647	0	ENST00000250448.2:c.1163_1187del	p.Leu388ProfsTer44	p.L388Pfs*44	ENST00000250448	NM_004496.3	388	cTGAAAGGGGACCCCCACTACTCCTTc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	489	440	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998307	100998308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6	103	74	0	ENST00000325455.5:c.1494dup	p.Ser499LeufsTer75	p.S499Lfs*75	ENST00000325455	NM_001202474.3	498	-/C																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864456	57864456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	374	484	1	ENST00000228682.2:c.1933G>A	p.Ala645Thr	p.A645T	ENST00000228682	NM_005269.2	645	Gct/Act																																																																														
POLE	5426	MSKCC	GRCh37	12	133215796	133215796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753627422		P-0042333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	394	498	1	ENST00000320574.5:c.5467C>T	p.Arg1823Cys	p.R1823C	ENST00000320574	NM_006231.2	1823	Cgc/Tgc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732934	30732935	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTTGA			P-0042333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	162	281	0	ENST00000359013.4:c.1623_1627dup	p.Thr543SerfsTer2	p.T543Sfs*2	ENST00000359013	NM_001024847.2	541	acg/acGTTGAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0042351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	140	619	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0042351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	76	327	0	ENST00000274335.5:c.1727_1729del	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250865	153250865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	91	449	1	ENST00000281708.4:c.1195G>T	p.Asp399Tyr	p.D399Y	ENST00000281708	NM_033632.3	399	Gat/Tat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992676	72992676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	94	564	0	ENST00000268489.5:c.1369G>T	p.Glu457Ter	p.E457*	ENST00000268489	NM_006885.3	457	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	178	299	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0042356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	460	415	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
RARA	5914	MSKCC	GRCh37	17	38512383	38512383	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1188389540		P-0042356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	175	323	0	ENST00000254066.5:c.1294C>T	p.Arg432Trp	p.R432W	ENST00000254066	NM_000964.3	432	Cgg/Tgg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422521	225422521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	37	227	0	ENST00000264414.4:c.119C>T	p.Ala40Val	p.A40V	ENST00000264414	NM_003590.4	40	gCa/gTa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225346684	225346684	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	133	275	0	ENST00000264414.4:c.1954G>T	p.Glu652Ter	p.E652*	ENST00000264414	NM_003590.4	652	Gaa/Taa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929570	44929570	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	179	127	0	ENST00000377967.4:c.2670C>A	p.Tyr890Ter	p.Y890*	ENST00000377967	NM_021140.2	890	taC/taA																																																																														
VHL	7428	MSKCC	GRCh37	3	10188251	10188251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs5030813		P-0042389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	67	689	0	ENST00000256474.2:c.394C>T	p.Gln132Ter	p.Q132*	ENST00000256474	NM_000551.3	132	Caa/Taa																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748513	43748513	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	43	434	0	ENST00000523873.1:c.467A>C	p.Lys156Thr	p.K156T	ENST00000523873		156	aAg/aCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	361	333	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	512	697	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729606	41729606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	225	499	0	ENST00000242208.4:c.923G>A	p.Arg308His	p.R308H	ENST00000242208	NM_002192.2	308	cGt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845397	151845397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779339485		P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	146	596	1	ENST00000262189.6:c.13615G>A	p.Val4539Met	p.V4539M	ENST00000262189	NM_170606.2	4539	Gtg/Atg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983110	201983114	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAC	AGAAC	-			P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	327	708	0	ENST00000359651.3:c.961_965del	p.Asn321GlnfsTer148	p.N321Qfs*148	ENST00000359651		320	aAGAAC/a																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045953	26045953	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1325561730		P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	23	445	0	ENST00000540144.1:c.315C>G	p.Phe105Leu	p.F105L	ENST00000540144	NM_003531.2	105	ttC/ttG																																																																														
PREX2	80243	MSKCC	GRCh37	8	68930111	68930111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	89	342	0	ENST00000288368.4:c.172G>T	p.Ala58Ser	p.A58S	ENST00000288368	NM_024870.2	58	Gca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0042404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	148	574	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519991		P-0042404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	183	851	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061636	38061636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	50	94	1	ENST00000250448.2:c.353C>T	p.Ala118Val	p.A118V	ENST00000250448	NM_004496.3	118	gCg/gTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604462	48604747	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGATAAAGTTTAGATCTACTGTTACTTCTTGGCACTTTAGCAGAGAAGTTATATGCTGAGGAGAATGAAATACAGAAAGCTGGTCACTTGATTAATTTAGAATGTAGGGAGGATGGGAAGAGATCACCCTGTCCCTCTGATGTCTTCCAAATCTTTTCTGTTAGGTCTGTCAGCTGCTGCTGGAATTGGTGTTGATGACCTTCGTCGCTTATGCATACTCAGGATGAGTTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCATCAAAGAAACACCTTGC	TGATAAAGTTTAGATCTACTGTTACTTCTTGGCACTTTAGCAGAGAAGTTATATGCTGAGGAGAATGAAATACAGAAAGCTGGTCACTTGATTAATTTAGAATGTAGGGAGGATGGGAAGAGATCACCCTGTCCCTCTGATGTCTTCCAAATCTTTTCTGTTAGGTCTGTCAGCTGCTGCTGGAATTGGTGTTGATGACCTTCGTCGCTTATGCATACTCAGGATGAGTTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCATCAAAGAAACACCTTGC	-			P-0042404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	58	43	0	ENST00000342988.3:c.1448-162_1571del		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212363	36212363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	221	949	0	ENST00000222270.7:c.2114C>G	p.Pro705Arg	p.P705R	ENST00000222270	NM_014727.1	705	cCt/cGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970972	21970973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	167	635	0	ENST00000304494.5:c.385dup	p.Tyr129LeufsTer13	p.Y129Lfs*13	ENST00000304494	NM_000077.4	129	tac/tTac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970972	21970973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	167	635	0	ENST00000304494.5:c.385dup	p.Tyr129LeufsTer13	p.Y129Lfs*13	ENST00000304494	NM_000077.4	129	tac/tTac																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0042405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	147	228	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579410	7579411	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0042405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	684	715	0	ENST00000269305.4:c.276_277del	p.Leu93ValfsTer55	p.L93Vfs*55	ENST00000269305	NM_001126112.2	92	ccCCtg/cctg																																																																														
CIC	23152	MSKCC	GRCh37	19	42799195	42799195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	211	655	0	ENST00000575354.2:c.4679C>A	p.Thr1560Asn	p.T1560N	ENST00000575354	NM_015125.3	1560	aCc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0042489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	222	658	2	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0042489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	50	447	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609330	81609330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908882		P-0042489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	46	348	0	ENST00000298171.2:c.928C>T	p.Arg310Cys	p.R310C	ENST00000298171	NM_000369.2	310	Cgc/Tgc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15964992	15964992	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	80	643	0	ENST00000268712.3:c.5604G>C	p.Gln1868His	p.Q1868H	ENST00000268712	NM_006311.3	1868	caG/caC																																																																														
APC	324	MSKCC	GRCh37	5	112173607	112173608	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0042489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	24	300	0	ENST00000257430.4:c.2318_2319del	p.Phe773Ter	p.F773*	ENST00000257430	NM_000038.5	772	acTTtt/actt																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911248	29911262	+	inframe_deletion	In_Frame_Del	DEL	TACCTGGATGGCACG	TACCTGGATGGCACG	-			P-0042489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	75	601	0	ENST00000376809.5:c.548_562del	p.Tyr183_Thr187del	p.Y183_T187del	ENST00000376809	NM_002116.7	183	TACCTGGATGGCACG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs886039484		P-0042498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	1328	872	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045854	143045854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	262	629	0	ENST00000262992.4:c.1780G>T	p.Val594Leu	p.V594L	ENST00000262992	NM_001101669.1	594	Gtg/Ttg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12013723	12013723	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	58	191	0	ENST00000353533.5:c.665A>T	p.Asn222Ile	p.N222I	ENST00000353533	NM_003010.3	222	aAc/aTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2213959	2213959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	805	838	0	ENST00000398665.3:c.1771G>T	p.Ala591Ser	p.A591S	ENST00000398665	NM_032482.2	591	Gcg/Tcg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278071	18278071	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	954	1003	0	ENST00000222254.8:c.1691A>C	p.Lys564Thr	p.K564T	ENST00000222254	NM_005027.3	564	aAg/aCg																																																																														
BCL6	604	MSKCC	GRCh37	3	187443292	187443292	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370028442		P-0042498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	163	313	1	ENST00000232014.4:c.1834G>A	p.Val612Ile	p.V612I	ENST00000232014	NM_001130845.1	612	Gta/Ata																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31451746	31451746	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0042498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	352	292	0	ENST00000344624.3:c.2576A>T	p.His859Leu	p.H859L	ENST00000344624		859	cAt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112154798	112154798	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1297299413		P-0042498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	270	620	0	ENST00000257430.4:c.1069A>G	p.Ile357Val	p.I357V	ENST00000257430	NM_000038.5	357	Atc/Gtc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	252	674	0	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797418	45797418	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	298	775	1	ENST00000372115.3:c.1059del	p.Arg354GlyfsTer40	p.R354Gfs*40	ENST00000372115	NM_001048171.1	353	ccC/cc																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205266	61205266	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753474292		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	252	533	0	ENST00000301761.2:c.206G>A	p.Arg69His	p.R69H	ENST00000301761	NM_017841.2	69	cGc/cAc																																																																														
ATM	472	MSKCC	GRCh37	11	108199953	108199953	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	32	168	0	ENST00000278616.4:c.7295T>C	p.Ile2432Thr	p.I2432T	ENST00000278616	NM_000051.3	2432	aTt/aCt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	106	171	1	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425348	49425349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	353	872	0	ENST00000301067.7:c.13139dup	p.Asp4381ArgfsTer29	p.D4381Rfs*29	ENST00000301067	NM_003482.3	4380	cca/ccCa																																																																														
POLE	5426	MSKCC	GRCh37	12	133249213	133249213	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	239	538	0	ENST00000320574.5:c.1686G>T	p.Met562Ile	p.M562I	ENST00000320574	NM_006231.2	562	atG/atT																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	262	432	11	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2114280	2114280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	307	650	0	ENST00000219476.3:c.1451T>C	p.Leu484Pro	p.L484P	ENST00000219476	NM_000548.3	484	cTg/cCg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	108	393	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23619279	23619279	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587776527		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	241	663	0	ENST00000261584.4:c.3256C>T	p.Arg1086Ter	p.R1086*	ENST00000261584	NM_024675.3	1086	Cga/Tga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929493	81929493	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs746612517		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	240	555	0	ENST00000359376.3:c.1154T>C	p.Val385Ala	p.V385A	ENST00000359376	NM_002661.3	385	gTc/gCc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351004	89351004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	375	750	1	ENST00000301030.4:c.1946G>A	p.Ser649Asn	p.S649N	ENST00000301030	NM_001256183.1	649	aGc/aAc																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110505	8110505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	168	396	0	ENST00000585124.1:c.387G>T	p.Gln129His	p.Q129H	ENST00000585124	NM_004217.3	129	caG/caT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973765	15973765	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	84	450	0	ENST00000268712.3:c.4227del	p.Pro1410LeufsTer18	p.P1410Lfs*18	ENST00000268712	NM_006311.3	1409	ggG/gg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024417	16024417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771531803		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	168	371	1	ENST00000268712.3:c.1801G>A	p.Ala601Thr	p.A601T	ENST00000268712	NM_006311.3	601	Gca/Aca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024476	16024476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	103	470	1	ENST00000268712.3:c.1742G>A	p.Arg581His	p.R581H	ENST00000268712	NM_006311.3	581	cGt/cAt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	224	591	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370254	40370254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750053820		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	333	714	0	ENST00000293328.3:c.1084G>A	p.Val362Met	p.V362M	ENST00000293328	NM_012448.3	362	Gtg/Atg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	294	855	4	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617669	39617669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	53	260	0	ENST00000262039.4:c.1853C>A	p.Pro618His	p.P618H	ENST00000262039	NM_002647.2	618	cCt/cAt																																																																														
INSR	3643	MSKCC	GRCh37	19	7125395	7125395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185736681		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	323	853	0	ENST00000302850.5:c.3157C>T	p.Arg1053Cys	p.R1053C	ENST00000302850	NM_000208.2	1053	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223614	36223614	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	363	938	1	ENST00000222270.7:c.6169del	p.Arg2057AlafsTer34	p.R2057Afs*34	ENST00000222270	NM_014727.1	2055	gCc/gc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	105	471	5	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794440	42794440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776806622		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	430	1017	0	ENST00000575354.2:c.1520G>A	p.Arg507His	p.R507H	ENST00000575354	NM_015125.3	507	cGc/cAc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47606123	47606123	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	64	290	0	ENST00000263735.4:c.587T>C	p.Val196Ala	p.V196A	ENST00000263735	NM_002354.2	196	gTt/gCt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99152265	99152265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	57	374	0	ENST00000074304.5:c.344T>C	p.Val115Ala	p.V115A	ENST00000074304	NM_001134224.1	115	gTc/gCc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	203	439	1	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932713	49932713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1156805771		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	367	784	1	ENST00000296474.3:c.3158G>A	p.Arg1053Gln	p.R1053Q	ENST00000296474	NM_002447.2	1053	cGg/cAg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588784	52588784	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1368022648		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	247	604	0	ENST00000394830.3:c.4244A>G	p.His1415Arg	p.H1415R	ENST00000394830	NM_018313.4	1415	cAt/cGt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682400	52682400	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	174	292	0	ENST00000394830.3:c.773del	p.Asn258MetfsTer25	p.N258Mfs*25	ENST00000394830	NM_018313.4	258	aAt/at																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73047245	73047245	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	203	367	0	ENST00000356692.5:c.56del	p.Lys19ArgfsTer14	p.K19Rfs*14	ENST00000356692		18	Aaa/aa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468398	89468398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	82	242	0	ENST00000336596.2:c.1938del	p.Glu647ArgfsTer9	p.E647Rfs*9	ENST00000336596	NM_005233.5	644	tcA/tc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204873	128204873	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	356	913	1	ENST00000341105.2:c.568del	p.Ala190LeufsTer28	p.A190Lfs*28	ENST00000341105	NM_032638.4	190	Gct/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951929	178951929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	176	392	2	ENST00000263967.3:c.2984C>T	p.Ala995Val	p.A995V	ENST00000263967	NM_006218.2	995	gCc/gTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270105	66270105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	131	344	0	ENST00000273854.3:c.1777C>A	p.Leu593Ile	p.L593I	ENST00000273854	NM_004439.5	593	Ctc/Atc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535316	66535316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	226	846	3	ENST00000273854.3:c.145G>A	p.Ala49Thr	p.A49T	ENST00000273854	NM_004439.5	49	Gca/Aca																																																																														
TET2	54790	MSKCC	GRCh37	4	106157563	106157563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	51	257	0	ENST00000380013.4:c.2464A>G	p.Thr822Ala	p.T822A	ENST00000380013	NM_001127208.2	822	Acc/Gcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1268684	1268684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	65	817	0	ENST00000310581.5:c.2533T>C	p.Cys845Arg	p.C845R	ENST00000310581	NM_198253.2	845	Tgc/Cgc																																																																														
APC	324	MSKCC	GRCh37	5	112163644	112163644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	97	279	0	ENST00000257430.4:c.1567A>G	p.Lys523Glu	p.K523E	ENST00000257430	NM_000038.5	523	Aaa/Gaa																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	95	214	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	113	206	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923673	131923673	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28903090		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	152	299	0	ENST00000265335.6:c.943G>T	p.Val315Leu	p.V315L	ENST00000265335		315	Gta/Tta																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518740	176518740	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1369223288		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	317	883	1	ENST00000292408.4:c.658G>A	p.Gly220Ser	p.G220S	ENST00000292408	NM_213647.1	220	Ggc/Agc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911117	29911117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1194	194	1005	0	ENST00000376809.5:c.416A>C	p.Gln139Pro	p.Q139P	ENST00000376809	NM_002116.7	139	cAg/cCg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323352	31323352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1428341966		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	145	535	0	ENST00000412585.2:c.637G>A	p.Val213Met	p.V213M	ENST00000412585	NM_005514.6	213	Gtg/Atg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	151	562	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32164794	32164794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	281	584	0	ENST00000375023.3:c.5108C>T	p.Thr1703Ile	p.T1703I	ENST00000375023	NM_004557.3	1703	aCa/aTa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192411	138192411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759654484		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	124	231	0	ENST00000237289.4:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000237289	NM_001270507.1	16	cGg/cAg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194824	29194824	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1347	397	1028	0	ENST00000240100.2:c.904A>G	p.Arg302Gly	p.R302G	ENST00000240100	NM_001394.6	302	Agg/Ggg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033246	69033246	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	222	532	0	ENST00000288368.4:c.3686T>A	p.Val1229Asp	p.V1229D	ENST00000288368	NM_024870.2	1229	gTc/gAc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70982011	70982011	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1342056205		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1342	161	1027	0	ENST00000276594.2:c.85T>C	p.Tyr29His	p.Y29H	ENST00000276594	NM_024504.3	29	Tac/Cac																																																																														
NBN	4683	MSKCC	GRCh37	8	90965738	90965738	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs104895031		P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	157	194	0	ENST00000265433.3:c.1579G>T	p.Asp527Tyr	p.D527Y	ENST00000265433	NM_002485.4	527	Gat/Tat																																																																														
MYC	4609	MSKCC	GRCh37	8	128752960	128752960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	204	458	0	ENST00000377970.2:c.1121A>G	p.His374Arg	p.H374R	ENST00000377970	NM_002467.4	374	cAc/cGc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741236	145741236	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1323	399	869	1	ENST00000428558.2:c.1170T>G	p.Phe390Leu	p.F390L	ENST00000428558	NM_004260.3	390	ttT/ttG																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907157	101907157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	74	293	0	ENST00000374994.4:c.1117G>A	p.Val373Met	p.V373M	ENST00000374994	NM_004612.2	373	Gtg/Atg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128305433	128305433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	262	565	1	ENST00000265960.3:c.863G>A	p.Gly288Glu	p.G288E	ENST00000265960	NM_001006617.1	288	gGa/gAa																																																																														
ABL1	25	MSKCC	GRCh37	9	133748300	133748300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	255	651	2	ENST00000318560.5:c.961G>A	p.Gly321Arg	p.G321R	ENST00000318560	NM_005157.4	321	Ggg/Agg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217291	7217315	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGTCCTCCAGGGCTCCCTAGAAAG	GTGTCCTCCAGGGCTCCCTAGAAAG	-			P-0042503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	213	648	0	ENST00000380728.2:c.398-8_414del		p.X133_splice	ENST00000380728		133																																																																															
TET2	54790	MSKCC	GRCh37	4	106157239	106157239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	127	382	0	ENST00000380013.4:c.2140T>C	p.Ser714Pro	p.S714P	ENST00000380013	NM_001127208.2	714	Tca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578455	+	protein_altering_variant	In_Frame_Del	DEL	CCATGGC	CCATGGC	GATG			P-0042548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	525	909	3	ENST00000269305.4:c.475_481delinsCATC	p.Ala159_Ala161delinsHisPro	p.A159_A161delinsHP	ENST00000269305	NM_001126112.2	159	GCCATGGcc/CATCcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0042554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	282	801	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0042554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	98	316	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
ERG	2078	MSKCC	GRCh37	21	39763593	39763593	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767696935		P-0042554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	53	382	1	ENST00000288319.7:c.859C>T	p.Arg287Cys	p.R287C	ENST00000288319	NM_182918.3	287	Cgt/Tgt																																																																														
ATR	545	MSKCC	GRCh37	3	142284971	142284971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	63	474	0	ENST00000350721.4:c.284G>T	p.Ser95Ile	p.S95I	ENST00000350721	NM_001184.3	95	aGt/aTt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56180646	56180677	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATGGCAGGTATGTTAATGTTTTAAATTACAA	GATGGCAGGTATGTTAATGTTTTAAATTACAA	-			P-0042554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	30	331	0	ENST00000399503.3:c.3975_3982+24del		p.X1325_splice	ENST00000399503	NM_005921.1	1325																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	46	103	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057520000		P-0042591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	215	833	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0042591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	126	520	0	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
RFWD2	0	MSKCC	GRCh37	1	176015357	176015357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	73	310	0	ENST00000367669.3:c.1381C>T	p.His461Tyr	p.H461Y	ENST00000367669	NM_022457.5	461	Cat/Tat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121082	11121082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	83	623	0	ENST00000344626.4:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000344626	NM_003072.3	717	Gaa/Aaa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209101872	209101872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	24	373	0	ENST00000345146.2:c.1176G>C	p.Leu392Phe	p.L392F	ENST00000345146	NM_005896.2	392	ttG/ttC																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513238	44513238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	29	344	0	ENST00000291552.4:c.697G>A	p.Asp233Asn	p.D233N	ENST00000291552	NM_006758.2	233	Gat/Aat																																																																														
TP63	8626	MSKCC	GRCh37	3	189586432	189586432	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	122	406	0	ENST00000264731.3:c.1056G>C	p.Arg352Ser	p.R352S	ENST00000264731	NM_003722.4	352	agG/agC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295171	1295171	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	36	92	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0042621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	585	614	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0042621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	252	663	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150496	157150496	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs17318151		P-0042621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	239	560	0	ENST00000346085.5:c.1678A>G	p.Ile560Val	p.I560V	ENST00000346085	NM_020732.3	560	Att/Gtt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	290	430	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913237		P-0042621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	163	377	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
AR	367	MSKCC	GRCh37	X	66766208	66766208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	163	501	1	ENST00000374690.3:c.1220G>A	p.Arg407His	p.R407H	ENST00000374690	NM_000044.3	407	cGc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32899249	32899249	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358603		P-0042621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	77	283	2	ENST00000380152.3:c.353G>A	p.Arg118His	p.R118H	ENST00000380152		118	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	248	642	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	142	437	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710517	114710517	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	85	401	0	ENST00000543371.1:c.2T>A	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	aTg/aAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5239002	5239002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775100072		P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	345	766	1	ENST00000357368.4:c.1777C>T	p.Arg593Cys	p.R593C	ENST00000357368	NM_002850.3	593	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916948	178916950	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	165	369	0	ENST00000263967.3:c.337_339del	p.Leu113del	p.L113del	ENST00000263967	NM_006218.2	112	aTCCtc/atc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90628066	90628066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	171	762	3	ENST00000330062.3:c.1253G>A	p.Cys418Tyr	p.C418Y	ENST00000330062	NM_002168.2	418	tGc/tAc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115269657	115269657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	138	598	0	ENST00000438362.2:c.1549G>A	p.Ala517Thr	p.A517T	ENST00000438362	NM_001242891.1	517	Gct/Act																																																																														
POLE	5426	MSKCC	GRCh37	12	133263888	133263888	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1167872104		P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	187	372	1	ENST00000320574.5:c.14G>A	p.Ser5Asn	p.S5N	ENST00000320574	NM_006231.2	5	aGc/aAc																																																																														
APC	324	MSKCC	GRCh37	5	112128141	112128141	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs777848503		P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	153	258	0	ENST00000257430.4:c.646-2A>T		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																															
MYC	4609	MSKCC	GRCh37	8	128750933	128750933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	251	505	0	ENST00000377970.2:c.470C>T	p.Ala157Val	p.A157V	ENST00000377970	NM_002467.4	157	gCc/gTc																																																																														
FANCC	2176	MSKCC	GRCh37	9	98009720	98009720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	78	275	0	ENST00000289081.3:c.244G>A	p.Ala82Thr	p.A82T	ENST00000289081	NM_000136.2	82	Gca/Aca																																																																														
ATRX	546	MSKCC	GRCh37	X	76875950	76875950	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	49	330	0	ENST00000373344.5:c.5185T>A	p.Ser1729Thr	p.S1729T	ENST00000373344	NM_000489.3	1729	Tct/Act																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372989163		P-0042629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	177	689	0	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0042629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	158	659	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0042629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	216	565	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670339	134670339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1303716587		P-0042629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	165	551	1	ENST00000398015.3:c.250C>T	p.Arg84Cys	p.R84C	ENST00000398015	NM_004441.4	84	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0042629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	113	404	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	156	445	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	70	358	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106720	27106720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770028290		P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	169	711	1	ENST00000324856.7:c.6331G>A	p.Val2111Ile	p.V2111I	ENST00000324856	NM_006015.4	2111	Gtc/Atc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591895	48591895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	105	499	1	ENST00000342988.3:c.1058A>G	p.Tyr353Cys	p.Y353C	ENST00000342988	NM_005359.5	353	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs967461896		P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	377	797	4	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112173848	112173848	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	167	366	0	ENST00000257430.4:c.2557G>T	p.Glu853Ter	p.E853*	ENST00000257430	NM_000038.5	853	Gag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478921	56478921	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	247	848	4	ENST00000267101.3:c.377A>T	p.Asn126Ile	p.N126I	ENST00000267101	NM_001982.3	126	aAc/aTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81934315	81934315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367678289		P-0042630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	199	825	1	ENST00000359376.3:c.1292C>T	p.Thr431Met	p.T431M	ENST00000359376	NM_002661.3	431	aCg/aTg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	197	390	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	89	449	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	544	759	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	44	356	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	91	625	6	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	114	570	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101300	27101300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	253	717	0	ENST00000324856.7:c.4582C>T	p.Arg1528Ter	p.R1528*	ENST00000324856	NM_006015.4	1528	Cga/Tga																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	147	982	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374390	31374390	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773207465		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	94	710	0	ENST00000328111.2:c.389G>A	p.Arg130His	p.R130H	ENST00000328111	NM_006892.3	130	cGc/cAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	100	558	2	ENST00000331920.6:c.3921del	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	55	545	0	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	85	343	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	165	476	5	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	105	822	4	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	105	650	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1057518664		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	40	239	0	ENST00000331920.6:c.114del	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11182050	11182050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	77	575	0	ENST00000361445.4:c.6796C>T	p.Arg2266Cys	p.R2266C	ENST00000361445	NM_004958.3	2266	Cgc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306553	41306553	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	81	666	1	ENST00000373198.4:c.1106del	p.Gly369ValfsTer28	p.G369Vfs*28	ENST00000373198	NM_133170.3	369	gGt/gt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	94	620	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	71	525	7	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38137094	38137094	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1351115556		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	192	726	0	ENST00000317025.8:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000317025	NM_023034.1	1242	Cga/Tga																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609744	81609744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201889708		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	44	478	0	ENST00000298171.2:c.1342G>A	p.Val448Ile	p.V448I	ENST00000298171	NM_000369.2	448	Gtc/Atc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	132	566	2	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405821	157405822	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	138	418	0	ENST00000346085.5:c.2067dup	p.Thr690HisfsTer73	p.T690Hfs*73	ENST00000346085	NM_020732.3	688	ctc/ctCc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	276	957	3	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225370686	225370686	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1232071537		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	21	312	3	ENST00000264414.4:c.1193del	p.Lys398ArgfsTer6	p.K398Rfs*6	ENST00000264414	NM_003590.4	398	aAg/ag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425823	49425824	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs757932721		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	173	759	0	ENST00000301067.7:c.12662_12664dup	p.Gln4221dup	p.Q4221dup	ENST00000301067	NM_003482.3	4221	cta/cAGCta																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645373	67645373	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1390969954		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	80	529	0	ENST00000264010.4:c.638G>A	p.Arg213His	p.R213H	ENST00000264010	NM_006565.3	213	cGt/cAt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605204	46605204	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1459319402		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	131	364	5	ENST00000263734.3:c.1421G>C	p.Ser474Thr	p.S474T	ENST00000263734	NM_001430.4	474	aGc/aCc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247892	10247892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	175	952	1	ENST00000340748.4:c.4310G>A	p.Arg1437His	p.R1437H	ENST00000340748		1437	cGc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76891548	76891548	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	20	436	2	ENST00000373344.5:c.4558-1G>T		p.X1520_splice	ENST00000373344	NM_000489.3	1520																																																																															
ATRX	546	MSKCC	GRCh37	X	76939496	76939496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1057523785		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	33	588	0	ENST00000373344.5:c.1252C>T	p.Arg418Ter	p.R418*	ENST00000373344	NM_000489.3	418	Cga/Tga																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141084	55141084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	60	416	0	ENST00000257290.5:c.1730C>A	p.Pro577Gln	p.P577Q	ENST00000257290	NM_006206.4	577	cCg/cAg																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181390	38181390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	81	423	0	ENST00000396334.3:c.403C>G	p.Gln135Glu	p.Q135E	ENST00000396334	NM_002468.4	135	Cag/Gag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105607	27105607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	208	638	0	ENST00000324856.7:c.5218G>T	p.Gly1740Ter	p.G1740*	ENST00000324856	NM_006015.4	1740	Gga/Tga																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074377	8074378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	50	434	0	ENST00000377482.5:c.281dup	p.Leu95SerfsTer7	p.L95Sfs*7	ENST00000377482	NM_018948.3	94	cct/ccCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057975	27057975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	85	650	0	ENST00000324856.7:c.1683G>C	p.Gln561His	p.Q561H	ENST00000324856	NM_006015.4	561	caG/caC																																																																														
ATM	472	MSKCC	GRCh37	11	108172379	108172379	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	26	366	0	ENST00000278616.4:c.5182A>G	p.Lys1728Glu	p.K1728E	ENST00000278616	NM_000051.3	1728	Aaa/Gaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118339525	118339528	+	frameshift_variant	Frame_Shift_Del	DEL	AGTC	AGTC	-			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	91	526	0	ENST00000534358.1:c.470_473del	p.Val157GlufsTer42	p.V157Efs*42	ENST00000534358	NM_005933.3	156	gaAGTC/ga																																																																														
POLE	5426	MSKCC	GRCh37	12	133225929	133225929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs550525366		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	156	893	0	ENST00000320574.5:c.3968C>T	p.Ala1323Val	p.A1323V	ENST00000320574	NM_006231.2	1323	gCc/gTc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066760	30066760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	51	478	0	ENST00000331968.5:c.2371G>A	p.Asp791Asn	p.D791N	ENST00000331968	NM_002742.2	791	Gac/Aac																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873759	35873759	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	126	673	0	ENST00000216797.5:c.92A>T	p.Asp31Val	p.D31V	ENST00000216797	NM_020529.2	31	gAc/gTc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988353	36988353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	59	284	0	ENST00000354822.5:c.300G>A	p.Met100Ile	p.M100I	ENST00000354822	NM_001079668.2	100	atG/atA																																																																														
IDH2	3418	MSKCC	GRCh37	15	90628058	90628058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1023592505		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	289	780	1	ENST00000330062.3:c.1261G>A	p.Gly421Ser	p.G421S	ENST00000330062	NM_002168.2	421	Ggc/Agc																																																																														
BLM	641	MSKCC	GRCh37	15	91312770	91312770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	87	587	0	ENST00000355112.3:c.2509G>A	p.Val837Ile	p.V837I	ENST00000355112	NM_000057.2	837	Gta/Ata																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658859	3658859	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs370082083		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	131	660	0	ENST00000294008.3:c.107A>G	p.Glu36Gly	p.E36G	ENST00000294008	NM_032444.2	36	gAa/gGa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627662	37627662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	97	760	0	ENST00000447079.4:c.1577C>A	p.Pro526His	p.P526H	ENST00000447079	NM_015083.1	526	cCt/cAt																																																																														
RARA	5914	MSKCC	GRCh37	17	38487544	38487544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	114	726	0	ENST00000254066.5:c.74C>T	p.Ala25Val	p.A25V	ENST00000254066	NM_000964.3	25	gCc/gTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860582	45860582	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1218	103	1072	1	ENST00000391945.4:c.1425del	p.Val476SerfsTer8	p.V476Sfs*8	ENST00000391945	NM_000400.3	475	ccC/cc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46603700	46603700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	200	717	0	ENST00000263734.3:c.1057G>A	p.Val353Met	p.V353M	ENST00000263734	NM_001430.4	353	Gtg/Atg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096022	178096022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184287392		P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	78	389	0	ENST00000397062.3:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000397062	NM_006164.4	437	Cgg/Tgg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198260991	198260992	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	86	517	0	ENST00000335508.6:c.3327_3328del	p.Arg1109SerfsTer26	p.R1109Sfs*26	ENST00000335508	NM_012433.2	1109	agAGtt/agtt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265148	198265150	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	96	336	0	ENST00000335508.6:c.2727_2729del	p.Met910del	p.M910del	ENST00000335508	NM_012433.2	909	gtAATg/gtg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209104640	209104640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	229	588	0	ENST00000345146.2:c.938C>T	p.Thr313Ile	p.T313I	ENST00000345146	NM_005896.2	313	aCc/aTc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998043	169998043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	79	720	1	ENST00000295797.4:c.734C>T	p.Ala245Val	p.A245V	ENST00000295797	NM_002740.5	245	gCt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916851	178916851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	134	637	0	ENST00000263967.3:c.238G>A	p.Glu80Lys	p.E80K	ENST00000263967	NM_006218.2	80	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916862	178916862	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	132	652	0	ENST00000263967.3:c.249T>A	p.Phe83Leu	p.F83L	ENST00000263967	NM_006218.2	83	ttT/ttA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951995	178951995	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	84	417	0	ENST00000263967.3:c.3050A>C	p.Asp1017Ala	p.D1017A	ENST00000263967	NM_006218.2	1017	gAt/gCt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696697	176696697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	132	370	0	ENST00000439151.2:c.5398G>A	p.Gly1800Arg	p.G1800R	ENST00000439151	NM_022455.4	1800	Gga/Aga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729726	41729727	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	45	527	0	ENST00000242208.4:c.802dup	p.Glu268GlyfsTer9	p.E268Gfs*9	ENST00000242208	NM_002192.2	268	gaa/gGaa																																																																														
MET	4233	MSKCC	GRCh37	7	116339164	116339164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	52	313	0	ENST00000397752.3:c.26C>A	p.Pro9His	p.P9H	ENST00000397752	NM_000245.2	9	cCt/cAt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148516774	148516775	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	36	311	0	ENST00000320356.2:c.912dup	p.His305SerfsTer8	p.H305Sfs*8	ENST00000320356	NM_004456.4	304	-/T																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151948046	151948046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	33	334	0	ENST00000262189.6:c.1627A>G	p.Asn543Asp	p.N543D	ENST00000262189	NM_170606.2	543	Aac/Gac																																																																														
ABL1	25	MSKCC	GRCh37	9	133759652	133759653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	140	964	0	ENST00000318560.5:c.1979dup	p.Pro662AlafsTer87	p.P662Afs*87	ENST00000318560	NM_005157.4	659	tcc/tCcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	371	738	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166445	118166445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767537718		P-0042654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	90	458	1	ENST00000369448.3:c.955G>A	p.Val319Met	p.V319M	ENST00000369448	NM_017709.3	319	Gtg/Atg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533123	63533123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754833574		P-0042654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	131	849	0	ENST00000307078.5:c.1771G>A	p.Ala591Thr	p.A591T	ENST00000307078	NM_004655.3	591	Gcc/Acc																																																																														
CIC	23152	MSKCC	GRCh37	19	42792113	42792113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	123	663	0	ENST00000575354.2:c.917C>T	p.Ala306Val	p.A306V	ENST00000575354	NM_015125.3	306	gCt/gTt																																																																														
AR	367	MSKCC	GRCh37	X	66765623	66765623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	155	1180	0	ENST00000374690.3:c.635G>C	p.Arg212Thr	p.R212T	ENST00000374690	NM_000044.3	212	aGg/aCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	128	445	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0042667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	229	660	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0042667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	175	507	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0042667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	175	507	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
ATM	472	MSKCC	GRCh37	11	108202747	108202747	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	44	367	0	ENST00000278616.4:c.7771A>C	p.Ser2591Arg	p.S2591R	ENST00000278616	NM_000051.3	2591	Agc/Cgc																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045741	26045741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	64	326	0	ENST00000540144.1:c.103G>A	p.Gly35Ser	p.G35S	ENST00000540144	NM_003531.2	35	Ggc/Agc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36934816	36934816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	153	423	0	ENST00000361632.4:c.1517C>T	p.Pro506Leu	p.P506L	ENST00000361632		506	cCc/cTc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176104212	176104212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	53	244	0	ENST00000367669.3:c.902G>A	p.Gly301Asp	p.G301D	ENST00000367669	NM_022457.5	301	gGc/gAc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625435	69625435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376445217		P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	117	535	0	ENST00000334134.2:c.358C>T	p.Arg120Trp	p.R120W	ENST00000334134	NM_005247.2	120	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108143570	108143570	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	65	284	0	ENST00000278616.4:c.3275C>G	p.Ser1092Ter	p.S1092*	ENST00000278616	NM_000051.3	1092	tCa/tGa																																																																														
ATM	472	MSKCC	GRCh37	11	108199916	108199916	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	56	192	0	ENST00000278616.4:c.7258G>C	p.Ala2420Pro	p.A2420P	ENST00000278616	NM_000051.3	2420	Gcc/Ccc																																																																														
CCND2	894	MSKCC	GRCh37	12	4409115	4409115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	166	460	0	ENST00000261254.3:c.810G>C	p.Lys270Asn	p.K270N	ENST00000261254	NM_001759.3	270	aaG/aaC																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601334	28601334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	38	334	0	ENST00000241453.7:c.2098C>T	p.Leu700Phe	p.L700F	ENST00000241453	NM_004119.2	700	Ctc/Ttc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727510	66727510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	238	416	0	ENST00000307102.5:c.226G>A	p.Ala76Thr	p.A76T	ENST00000307102	NM_002755.3	76	Gct/Act																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647419	23647419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	44	448	0	ENST00000261584.4:c.448C>G	p.Gln150Glu	p.Q150E	ENST00000261584	NM_024675.3	150	Cag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577092	7577093	+	missense_variant	Missense_Mutation	DNP	CC	CC	GG			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	205	491	2	ENST00000269305.4:c.845_846inv	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGG/cCC																																																																														
EZH1	2145	MSKCC	GRCh37	17	40865353	40865353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1454055017		P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	61	547	0	ENST00000428826.2:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000428826		360	Cgt/Tgt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210763	5210763	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	209	574	0	ENST00000357368.4:c.5288A>T	p.Asp1763Val	p.D1763V	ENST00000357368	NM_002850.3	1763	gAc/gTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223164	5223164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	55	553	0	ENST00000357368.4:c.2639C>G	p.Thr880Ser	p.T880S	ENST00000357368	NM_002850.3	880	aCc/aGc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244386	5244386	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	179	516	0	ENST00000357368.4:c.1096G>T	p.Glu366Ter	p.E366*	ENST00000357368	NM_002850.3	366	Gaa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142259789	142259789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	128	452	0	ENST00000350721.4:c.3538A>G	p.Thr1180Ala	p.T1180A	ENST00000350721	NM_001184.3	1180	Act/Gct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	101	383	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55968640	55968640	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	143	430	1	ENST00000263923.4:c.2023A>T	p.Asn675Tyr	p.N675Y	ENST00000263923	NM_002253.2	675	Aat/Tat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295182	1295182	+	upstream_gene_variant	5'Flank	SNP	A	A	T			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	72	202	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	106	275	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38962434	38962434	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	41	191	0	ENST00000357387.3:c.1698A>T	p.Lys566Asn	p.K566N	ENST00000357387	NM_152756.3	566	aaA/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112175931	112175931	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	36	238	0	ENST00000257430.4:c.4643del	p.Asn1548ThrfsTer17	p.N1548Tfs*17	ENST00000257430	NM_000038.5	1547	gAa/ga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	144	520	1	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	68	393	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741153	145741153	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs548957135		P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	147	493	0	ENST00000428558.2:c.1253G>A	p.Arg418Gln	p.R418Q	ENST00000428558	NM_004260.3	418	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175934	112175934	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	41	228	0	ENST00000257430.4:c.4643A>T	p.Asn1548Ile	p.N1548I	ENST00000257430	NM_000038.5	1548	aAc/aTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	146	737	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	21	163	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	68	577	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374244	138374244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	58	611	0	ENST00000289153.2:c.3200A>T	p.Asp1067Val	p.D1067V	ENST00000289153	NM_006219.2	1067	gAc/gTc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699360	47699360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	37	392	0	ENST00000347630.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000347630	NM_001007230.1	50	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913399		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	14	445	1	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120226	70120226	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	107	689	0	ENST00000245479.2:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000245479	NM_000346.3	410	Cag/Tag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	110	745	11	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	84	600	4	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101612	27101612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	136	856	2	ENST00000324856.7:c.4899del	p.Met1634Ter	p.M1634*	ENST00000324856	NM_006015.4	1632	Ccc/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991599	72991599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	113	786	1	ENST00000268489.5:c.2446G>A	p.Ala816Thr	p.A816T	ENST00000268489	NM_006885.3	816	Gcc/Acc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31368262	31368262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	87	740	1	ENST00000328111.2:c.133G>A	p.Glu45Lys	p.E45K	ENST00000328111	NM_006892.3	45	Gag/Aag																																																																														
TP63	8626	MSKCC	GRCh37	3	189612100	189612100	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1455505991		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	111	711	1	ENST00000264731.3:c.1852C>T	p.Arg618Trp	p.R618W	ENST00000264731	NM_003722.4	618	Cgg/Tgg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016675	12016675	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	40	383	0	ENST00000353533.5:c.811G>A	p.Ala271Thr	p.A271T	ENST00000353533	NM_003010.3	271	Gca/Aca																																																																														
TERT	7015	MSKCC	GRCh37	5	1260659	1260659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	127	748	1	ENST00000310581.5:c.2900G>A	p.Gly967Glu	p.G967E	ENST00000310581	NM_198253.2	967	gGg/gAg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227012	53227012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	111	704	0	ENST00000375401.3:c.2563G>A	p.Ala855Thr	p.A855T	ENST00000375401	NM_004187.3	855	Gcc/Acc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932060	39932060	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	120	821	1	ENST00000378444.4:c.2539C>T	p.Gln847Ter	p.Q847*	ENST00000378444	NM_001123385.1	847	Cag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169852	32169852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs758030641		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	86	659	0	ENST00000375023.3:c.3755+1G>A		p.X1252_splice	ENST00000375023	NM_004557.3	1252																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36217156	36217156	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771289674		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	157	787	0	ENST00000222270.7:c.3905G>A	p.Arg1302His	p.R1302H	ENST00000222270	NM_014727.1	1302	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821343	72821344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771413197		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	48	504	0	ENST00000268489.5:c.10831dup	p.His3611ProfsTer55	p.H3611Pfs*55	ENST00000268489	NM_006885.3	3611	cac/cCac																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643770	52643771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	63	684	1	ENST00000394830.3:c.2125dup	p.Ile709AsnfsTer14	p.I709Nfs*14	ENST00000394830	NM_018313.4	709	att/aAtt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9776036	9776037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1299016164		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	82	735	1	ENST00000377346.4:c.505dup	p.Leu169ProfsTer27	p.L169Pfs*27	ENST00000377346	NM_005026.3	167	ttc/ttCc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16247366	16247366	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	31	264	0	ENST00000375759.3:c.1637T>C	p.Val546Ala	p.V546A	ENST00000375759	NM_015001.2	546	gTg/gCg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257095	16257095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	55	657	0	ENST00000375759.3:c.4360C>T	p.Leu1454Phe	p.L1454F	ENST00000375759	NM_015001.2	1454	Ctc/Ttc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743826	46743826	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	102	759	0	ENST00000371975.4:c.2116T>C	p.Trp706Arg	p.W706R	ENST00000371975	NM_003579.3	706	Tgg/Cgg																																																																														
RET	5979	MSKCC	GRCh37	10	43601959	43601959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	129	841	1	ENST00000355710.3:c.1003C>T	p.Pro335Ser	p.P335S	ENST00000355710	NM_020975.4	335	Ccc/Tcc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63699941	63699941	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	47	310	0	ENST00000279873.7:c.277-1G>A		p.X93_splice	ENST00000279873	NM_032199.2	93																																																																															
TET1	80312	MSKCC	GRCh37	10	70412266	70412266	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	24	263	0	ENST00000373644.4:c.4380del	p.Gly1461GlufsTer4	p.G1461Efs*4	ENST00000373644	NM_030625.2	1459	cAa/ca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711918	89711918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	33	498	1	ENST00000371953.3:c.536G>T	p.Ser179Ile	p.S179I	ENST00000371953	NM_000314.4	179	aGc/aTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711928	89711928	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	30	502	0	ENST00000371953.3:c.546A>C	p.Leu182Phe	p.L182F	ENST00000371953	NM_000314.4	182	ttA/ttC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725046	89725047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGCTGTA			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	17	242	0	ENST00000371953.3:c.1030_1037dup	p.Tyr346Ter	p.Y346*	ENST00000371953	NM_000314.4	343	-/AAGCTGTA																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274768	123274768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	85	736	0	ENST00000358487.5:c.1150G>T	p.Gly384Trp	p.G384W	ENST00000358487	NM_000141.4	384	Ggg/Tgg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577196	64577196	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	132	825	0	ENST00000337652.1:c.386T>C	p.Leu129Pro	p.L129P	ENST00000337652	NM_130803.2	129	cTc/cCc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342400	118342400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	40	388	0	ENST00000534358.1:c.526C>T	p.Arg176Cys	p.R176C	ENST00000534358	NM_005933.3	176	Cgt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18443863	18443863	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774001673		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	19	355	0	ENST00000266497.5:c.836C>T	p.Pro279Leu	p.P279L	ENST00000266497		279	cCg/cTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491441	18491441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	21	235	0	ENST00000266497.5:c.1354G>A	p.Ala452Thr	p.A452T	ENST00000266497		452	Gca/Aca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211641	46211641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	24	349	0	ENST00000334344.6:c.607C>A	p.Leu203Ile	p.L203I	ENST00000334344	NM_152641.2	203	Cta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447349	49447349	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	114	757	0	ENST00000301067.7:c.749A>T	p.His250Leu	p.H250L	ENST00000301067	NM_003482.3	250	cAc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448501	49448501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	86	644	1	ENST00000301067.7:c.210C>A	p.Asn70Lys	p.N70K	ENST00000301067	NM_003482.3	70	aaC/aaA																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481626	56481626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	122	746	0	ENST00000267101.3:c.661C>A	p.Pro221Thr	p.P221T	ENST00000267101	NM_001982.3	221	Ccc/Acc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487226	56487226	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1385659523		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	95	730	0	ENST00000267101.3:c.1372G>A	p.Ala458Thr	p.A458T	ENST00000267101	NM_001982.3	458	Gcc/Acc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487233	56487233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	84	725	0	ENST00000267101.3:c.1379G>A	p.Arg460Lys	p.R460K	ENST00000267101	NM_001982.3	460	aGg/aAg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492602	56492602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	100	606	0	ENST00000267101.3:c.2752G>A	p.Ala918Thr	p.A918T	ENST00000267101	NM_001982.3	918	Gct/Act																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608500	28608500	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	44	634	0	ENST00000241453.7:c.1642A>T	p.Ile548Phe	p.I548F	ENST00000241453	NM_004119.2	548	Att/Ttt																																																																														
RB1	5925	MSKCC	GRCh37	13	48951083	48951083	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1454134039		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	34	250	0	ENST00000267163.4:c.1245A>G	p.Ile415Met	p.I415M	ENST00000267163	NM_000321.2	415	atA/atG																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519001	103519001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	57	487	2	ENST00000355739.4:c.2339G>A	p.Gly780Asp	p.G780D	ENST00000355739	NM_000123.3	780	gGc/gAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42002960	42002960	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1201355035		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	56	565	0	ENST00000219905.7:c.2497A>G	p.Asn833Asp	p.N833D	ENST00000219905	NM_001164273.1	833	Aat/Gat																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929528	81929528	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	36	648	0	ENST00000359376.3:c.1189T>C	p.Ser397Pro	p.S397P	ENST00000359376	NM_002661.3	397	Tcg/Ccg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89816246	89816246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	107	727	2	ENST00000389301.3:c.3131A>G	p.Gln1044Arg	p.Q1044R	ENST00000389301	NM_000135.2	1044	cAg/cGg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89862329	89862329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	110	689	0	ENST00000389301.3:c.991A>G	p.Ser331Gly	p.S331G	ENST00000389301	NM_000135.2	331	Agc/Ggc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15952204	15952204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	123	692	1	ENST00000268712.3:c.6491G>A	p.Ser2164Asn	p.S2164N	ENST00000268712	NM_006311.3	2164	aGc/aAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983788	15983788	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1344825664		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	36	636	0	ENST00000268712.3:c.3334C>T	p.Pro1112Ser	p.P1112S	ENST00000268712	NM_006311.3	1112	Ccc/Tcc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435618	56435618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	123	706	0	ENST00000407977.2:c.1519C>T	p.Pro507Ser	p.P507S	ENST00000407977		507	Ccc/Tcc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435906	56435906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	77	572	0	ENST00000407977.2:c.1231C>T	p.Pro411Ser	p.P411S	ENST00000407977		411	Ccc/Tcc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936826	78936826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	101	626	0	ENST00000306801.3:c.3908C>T	p.Ala1303Val	p.A1303V	ENST00000306801	NM_020761.2	1303	gCc/gTc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56348455	56348455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	60	417	0	ENST00000348428.3:c.263C>A	p.Pro88His	p.P88H	ENST00000348428	NM_006785.3	88	cCc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214744	5214744	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	58	518	0	ENST00000357368.4:c.4322T>A	p.Ile1441Asn	p.I1441N	ENST00000357368	NM_002850.3	1441	aTc/aAc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10267178	10267178	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	47	621	0	ENST00000340748.4:c.1240T>C	p.Cys414Arg	p.C414R	ENST00000340748		414	Tgt/Cgt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18280004	18280004	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	77	570	0	ENST00000222254.8:c.2087A>G	p.Tyr696Cys	p.Y696C	ENST00000222254	NM_005027.3	696	tAc/tGc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976447	18976447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	106	857	0	ENST00000262803.5:c.3097A>G	p.Thr1033Ala	p.T1033A	ENST00000262803	NM_002911.3	1033	Act/Gct																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257847	19257847	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	83	845	1	ENST00000162023.5:c.539del	p.Pro180GlnfsTer43	p.P180Qfs*43	ENST00000162023		180	cCa/ca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228005	36228005	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	94	772	0	ENST00000222270.7:c.7391T>G	p.Leu2464Arg	p.L2464R	ENST00000222270	NM_014727.1	2464	cTc/cGc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905980	50905980	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775232133		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	105	774	0	ENST00000440232.2:c.952G>A	p.Glu318Lys	p.E318K	ENST00000440232	NM_002691.3	318	Gag/Aag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469118	25469118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	108	799	1	ENST00000264709.3:c.1340C>A	p.Ala447Asp	p.A447D	ENST00000264709	NM_175629.2	447	gCc/gAc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99162486	99162486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	47	443	0	ENST00000074304.5:c.1004C>A	p.Pro335His	p.P335H	ENST00000074304	NM_001134224.1	335	cCc/cAc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044530	128044530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	80	616	0	ENST00000285398.2:c.1091T>C	p.Leu364Pro	p.L364P	ENST00000285398	NM_000122.1	364	cTg/cCg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044561	128044561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	86	567	0	ENST00000285398.2:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000285398	NM_000122.1	354	Gca/Aca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530129	212530129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	62	475	0	ENST00000342788.4:c.1790T>C	p.Leu597Ser	p.L597S	ENST00000342788	NM_005235.2	597	tTa/tCa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31387964	31387964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	23	383	0	ENST00000328111.2:c.1765C>A	p.Leu589Ile	p.L589I	ENST00000328111	NM_006892.3	589	Cta/Ata																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419884	41419884	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	113	642	0	ENST00000373198.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000373198	NM_133170.3	146	tGg/tAg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265148	46265148	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	40	441	0	ENST00000371998.3:c.2018T>C	p.Met673Thr	p.M673T	ENST00000371998		673	aTg/aCg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46267875	46267875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	68	593	0	ENST00000371998.3:c.2636T>C	p.Leu879Ser	p.L879S	ENST00000371998		879	tTa/tCa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71019887	71019887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	73	343	1	ENST00000318789.4:c.1722G>T	p.Gln574His	p.Q574H	ENST00000318789	NM_032682.5	574	caG/caT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178942595	178942595	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1261983174		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	33	306	0	ENST00000263967.3:c.2402T>G	p.Phe801Cys	p.F801C	ENST00000263967	NM_006218.2	801	tTt/tGt																																																																														
TP63	8626	MSKCC	GRCh37	3	189607198	189607198	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1276572584		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	118	738	0	ENST00000264731.3:c.1577C>T	p.Pro526Leu	p.P526L	ENST00000264731	NM_003722.4	526	cCt/cTt																																																																														
TP63	8626	MSKCC	GRCh37	3	189612082	189612082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	107	659	0	ENST00000264731.3:c.1834T>C	p.Ser612Pro	p.S612P	ENST00000264731	NM_003722.4	612	Tcc/Ccc																																																																														
KDR	3791	MSKCC	GRCh37	4	55946239	55946239	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	63	497	0	ENST00000263923.4:c.3940A>T	p.Thr1314Ser	p.T1314S	ENST00000263923	NM_002253.2	1314	Aca/Tca																																																																														
KDR	3791	MSKCC	GRCh37	4	55991429	55991429	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	129	799	0	ENST00000263923.4:c.32T>C	p.Leu11Pro	p.L11P	ENST00000263923	NM_002253.2	11	cTg/cCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538274	187538274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	60	593	1	ENST00000441802.2:c.8960A>G	p.Glu2987Gly	p.E2987G	ENST00000441802	NM_005245.3	2987	gAa/gGa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38959920	38959920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	30	300	0	ENST00000357387.3:c.2012A>G	p.His671Arg	p.H671R	ENST00000357387	NM_152756.3	671	cAt/cGt																																																																														
MSH3	4437	MSKCC	GRCh37	5	80169084	80169084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	32	473	1	ENST00000265081.6:c.3280G>A	p.Glu1094Lys	p.E1094K	ENST00000265081	NM_002439.4	1094	Gaa/Aaa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671723	30671723	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	91	735	0	ENST00000376406.3:c.5237del	p.Leu1746TrpfsTer16	p.L1746Wfs*16	ENST00000376406	NM_014641.2	1746	tTg/tg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178699	32178699	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	106	828	3	ENST00000375023.3:c.2695T>A	p.Ser899Thr	p.S899T	ENST00000375023	NM_004557.3	899	Tcc/Acc																																																																														
SMO	6608	MSKCC	GRCh37	7	128845069	128845069	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1291088639		P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	66	861	0	ENST00000249373.3:c.563A>G	p.Asn188Ser	p.N188S	ENST00000249373	NM_005631.4	188	aAc/aGc																																																																														
LYN	4067	MSKCC	GRCh37	8	56866457	56866457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	49	737	0	ENST00000519728.1:c.704G>T	p.Trp235Leu	p.W235L	ENST00000519728	NM_002350.3	235	tGg/tTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376696	8376696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	109	566	0	ENST00000356435.5:c.4417G>T	p.Gly1473Cys	p.G1473C	ENST00000356435		1473	Ggc/Tgc																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015192	37015192	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	45	513	0	ENST00000358127.4:c.213-1G>T		p.X71_splice	ENST00000358127	NM_001280556.1	71																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139391244	139391244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	139	865	0	ENST00000277541.6:c.6947G>T	p.Ser2316Ile	p.S2316I	ENST00000277541	NM_017617.3	2316	aGc/aTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418371	139418371	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	117	867	0	ENST00000277541.6:c.201del	p.Cys68AlafsTer32	p.C68Afs*32	ENST00000277541	NM_017617.3	67	ccC/cc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932012	39932012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	107	782	2	ENST00000378444.4:c.2587A>T	p.Ser863Cys	p.S863C	ENST00000378444	NM_001123385.1	863	Agt/Tgt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932482	39932482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	120	792	0	ENST00000378444.4:c.2117T>C	p.Leu706Pro	p.L706P	ENST00000378444	NM_001123385.1	706	cTt/cCt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245038	53245038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	111	806	0	ENST00000375401.3:c.902G>A	p.Ser301Asn	p.S301N	ENST00000375401	NM_004187.3	301	aGc/aAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412301	63412301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	142	934	0	ENST00000330258.3:c.866C>G	p.Thr289Arg	p.T289R	ENST00000330258	NM_152424.3	289	aCa/aGa																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504164	123504164	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	54	443	0	ENST00000371139.4:c.340A>T	p.Thr114Ser	p.T114S	ENST00000371139	NM_001114937.2	114	Act/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0042788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	308	565	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2094723	2094723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs374489979		P-0042788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	274	526	1	ENST00000219066.1:c.457C>T	p.Arg153Ter	p.R153*	ENST00000219066	NM_002528.5	153	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46242673	46242673	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1469253969		P-0042788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	165	284	0	ENST00000334344.6:c.1635G>A	p.Met545Ile	p.M545I	ENST00000334344	NM_152641.2	545	atG/atA																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12044565	12044565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	113	409	0	ENST00000353533.5:c.1188G>A	p.Met396Ile	p.M396I	ENST00000353533	NM_003010.3	396	atG/atA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36209066	36209066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	57	88	0	ENST00000222270.7:c.146G>A	p.Arg49His	p.R49H	ENST00000222270	NM_014727.1	49	cGc/cAc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748153	41748153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	150	295	0	ENST00000226382.2:c.616C>G	p.Pro206Ala	p.P206A	ENST00000226382	NM_003924.3	206	Ccc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0042815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	136	649	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs113954997		P-0042815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	137	534	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
BBC3	27113	MSKCC	GRCh37	19	47724984	47724984	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373478289		P-0042815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	130	849	1	ENST00000449228.1:c.760G>A	p.Ala254Thr	p.A254T	ENST00000449228	NM_001127240.2	254	Gcg/Acg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226467	41226467	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	114	576	0	ENST00000357654.3:c.4556del	p.Asn1519IlefsTer29	p.N1519Ifs*29	ENST00000357654	NM_007294.3	1519	aAt/at																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289950	15289950	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	105	855	0	ENST00000263388.2:c.3604T>A	p.Cys1202Ser	p.C1202S	ENST00000263388	NM_000435.2	1202	Tgc/Agc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715850	117715863	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCTTAGAGAAGT	TTTCTTAGAGAAGT	-			P-0042815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	52	323	0	ENST00000368508.3:c.895_908del	p.Thr299GlufsTer9	p.T299Efs*9	ENST00000368508	NM_002944.2	299	ACTTCTCTAAGAAAg/g																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873287	151873287	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	102	222	0	ENST00000262189.6:c.9251T>C	p.Phe3084Ser	p.F3084S	ENST00000262189	NM_170606.2	3084	tTc/tCc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0042818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	118	449	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	255	554	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794311		P-0042818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	373	746	1	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372070	55372070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	264	587	0	ENST00000297316.4:c.760G>A	p.Ala254Thr	p.A254T	ENST00000297316	NM_022454.3	254	Gcg/Acg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782797		P-0042818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	59	581	0	ENST00000304494.5:c.335G>A	p.Arg112His	p.R112H	ENST00000304494	NM_000077.4	112	cGt/cAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782797		P-0042818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	59	581	0	ENST00000304494.5:c.335G>A	p.Arg112His	p.R112H	ENST00000304494	NM_000077.4	112	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175377	112175378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	81	282	0	ENST00000257430.4:c.4090dup	p.Ser1364LysfsTer11	p.S1364Kfs*11	ENST00000257430	NM_000038.5	1362	-/A																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646467	23646467	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881906		P-0042964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	88	596	2	ENST00000261584.4:c.1400G>A	p.Gly467Asp	p.G467D	ENST00000261584	NM_024675.3	467	gGc/gAc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375431	40375431	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	98	625	0	ENST00000293328.3:c.519C>G	p.Ile173Met	p.I173M	ENST00000293328	NM_012448.3	173	atC/atG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023465	27023549	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCTTCCCCAACCACCAGTACAACTCCTACTACCCCAACC	GGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCTTCCCCAACCACCAGTACAACTCCTACTACCCCAACC	-			P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	127	588	0	ENST00000324856.7:c.572_656del	p.Gly191AlafsTer13	p.G191Afs*13	ENST00000324856	NM_006015.4	191	GGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCTTCCCCAACCACCAGTACAACTCCTACTACCCCAACCgc/gc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023602	27023609	+	protein_altering_variant	In_Frame_Del	DEL	TGGCACTC	TGGCACTC	CG			P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	113	415	2	ENST00000324856.7:c.708_715delinsCG	p.Gly237_Pro239delinsAla	p.G237_P239delinsA	ENST00000324856	NM_006015.4	236	ggTGGCACTCcg/ggCGcg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419049	419049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	13	670	0	ENST00000399788.2:c.3298G>A	p.Glu1100Lys	p.E1100K	ENST00000399788	NM_001042603.1	1100	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	25	542	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1131691025		P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	60	681	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591821	48591821	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	23	564	0	ENST00000342988.3:c.984C>A	p.Tyr328Ter	p.Y328*	ENST00000342988	NM_005359.5	328	taC/taA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488657	212488657	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374970657		P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	19	522	0	ENST00000342788.4:c.2192C>T	p.Thr731Met	p.T731M	ENST00000342788	NM_005235.2	731	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112151191	112151191	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	15	424	0	ENST00000257430.4:c.835-1G>A		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157525016	157525016	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	21	458	0	ENST00000346085.5:c.4911G>A	p.Trp1637Ter	p.W1637*	ENST00000346085	NM_020732.3	1637	tgG/tgA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	196	582	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11294268	11294268	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs879251235		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	228	652	0	ENST00000361445.4:c.2263C>T	p.Arg755Cys	p.R755C	ENST00000361445	NM_004958.3	755	Cgc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256462	16256462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	243	683	0	ENST00000375759.3:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000375759	NM_015001.2	1243	Cgg/Tgg																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699492	117699493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	102	448	0	ENST00000369458.3:c.148dup	p.Glu50GlyfsTer10	p.E50Gfs*10	ENST00000369458	NM_024626.3	50	gag/gGag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851325	156851325	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	202	732	1	ENST00000524377.1:c.2285del	p.Gly762AlafsTer?	p.G762Afs*?	ENST00000524377	NM_002529.3	761	cGg/cg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651613	206651613	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782254432		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	333	875	0	ENST00000367120.3:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000367120	NM_014002.3	308	cGa/cAa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097701	8097702	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	63	502	0	ENST00000346208.3:c.86dup	p.Leu31ProfsTer22	p.L31Pfs*22	ENST00000346208		28	cac/caCc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8105989	8105989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	217	544	0	ENST00000346208.3:c.809C>T	p.Ser270Leu	p.S270L	ENST00000346208		270	tCg/tTg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88676897	88676897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782682		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	218	553	0	ENST00000372037.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000372037	NM_004329.2	228	Cga/Tga																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683357	88683357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201040		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	250	761	0	ENST00000372037.3:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000372037	NM_004329.2	494	Cga/Tga																																																																														
WT1	7490	MSKCC	GRCh37	11	32456690	32456690	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	102	429	0	ENST00000332351.3:c.202C>T	p.Gln68Ter	p.Q68*	ENST00000332351	NM_024426.4	68	Caa/Taa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767319284		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	167	680	4	ENST00000337652.1:c.1561dup	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	45	421	1	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
CBL	867	MSKCC	GRCh37	11	119170256	119170256	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374672276		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	130	371	1	ENST00000264033.4:c.2486G>A	p.Arg829Gln	p.R829Q	ENST00000264033	NM_005188.3	829	cGg/cAg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870961	12870962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	117	445	0	ENST00000228872.4:c.192dup	p.Gln65SerfsTer60	p.Q65Sfs*60	ENST00000228872	NM_004064.3	63	gat/gaTt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	104	577	6	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46254721	46254721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	54	378	0	ENST00000334344.6:c.4911G>T	p.Gln1637His	p.Q1637H	ENST00000334344	NM_152641.2	1637	caG/caT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416495	49416495	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	54	665	1	ENST00000301067.7:c.16216A>G	p.Ile5406Val	p.I5406V	ENST00000301067	NM_003482.3	5406	Atc/Gtc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562427	21562427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	125	459	1	ENST00000382592.4:c.1492G>T	p.Gly498Cys	p.G498C	ENST00000382592	NM_014572.2	498	Ggc/Tgc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895643	28895643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	39	602	0	ENST00000282397.4:c.3131C>T	p.Ala1044Val	p.A1044V	ENST00000282397	NM_002019.4	1044	gCc/gTc																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871633	35871634	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	116	383	0	ENST00000216797.5:c.872_873del	p.Thr291ArgfsTer15	p.T291Rfs*15	ENST00000216797	NM_020529.2	291	aCA/a																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343636	343636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs544557159		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	274	910	2	ENST00000262320.3:c.2038C>T	p.Arg680Trp	p.R680W	ENST00000262320	NM_003502.3	680	Cgg/Tgg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3651016	3651016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	205	554	0	ENST00000294008.3:c.1127C>T	p.Ala376Val	p.A376V	ENST00000294008	NM_032444.2	376	gCa/gTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900423	3900423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	253	755	1	ENST00000262367.5:c.673C>T	p.Pro225Ser	p.P225S	ENST00000262367	NM_004380.2	225	Ccg/Tcg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032029	10032029	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747214620		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	111	699	0	ENST00000330684.3:c.794C>T	p.Thr265Met	p.T265M	ENST00000330684	NM_001134407.1	265	aCg/aTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805074	89805074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74977201		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	192	704	1	ENST00000389301.3:c.4303G>A	p.Ala1435Thr	p.A1435T	ENST00000389301	NM_000135.2	1435	Gcc/Acc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217705	7217707	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs757139280		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	40	534	0	ENST00000380728.2:c.220_222del	p.Glu74del	p.E74del	ENST00000380728		74	GAG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	67	813	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29554265	29554265	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786202504		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	155	493	0	ENST00000358273.4:c.2281G>A	p.Ala761Thr	p.A761T	ENST00000358273	NM_001042492.2	761	Gca/Aca																																																																														
NF1	4763	MSKCC	GRCh37	17	29687569	29687569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	198	689	1	ENST00000358273.4:c.8225A>G	p.Tyr2742Cys	p.Y2742C	ENST00000358273	NM_001042492.2	2742	tAc/tGc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30322639	30322639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	176	583	0	ENST00000322652.5:c.1652T>C	p.Val551Ala	p.V551A	ENST00000322652	NM_015355.2	551	gTa/gCa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627500	37627501	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	103	599	0	ENST00000447079.4:c.1421dup	p.Asn474LysfsTer12	p.N474Kfs*12	ENST00000447079	NM_015083.1	472	gta/gtAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37863252	37863252	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1284110310		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	62	636	3	ENST00000269571.5:c.83G>A	p.Gly28Asp	p.G28D	ENST00000269571		28	gGc/gAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866112	37866112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	273	684	0	ENST00000269571.5:c.621G>T	p.Glu207Asp	p.E207D	ENST00000269571		207	gaG/gaT																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883113	37883113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780434636		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	229	852	1	ENST00000269571.5:c.3016C>T	p.Arg1006Cys	p.R1006C	ENST00000269571		1006	Cgc/Tgc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362446	40362447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1202978138		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	202	645	0	ENST00000293328.3:c.1749dup	p.His584ThrfsTer8	p.H584Tfs*8	ENST00000293328	NM_012448.3	583	-/A																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	200	827	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448293	56448293	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	231	747	0	ENST00000407977.2:c.354del	p.Cys119AlafsTer39	p.C119Afs*39	ENST00000407977		118	ccC/cc																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780620	56780620	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200857129		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	178	584	1	ENST00000337432.4:c.635G>A	p.Arg212His	p.R212H	ENST00000337432	NM_058216.2	212	cGc/cAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63545650	63545650	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747647668		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	157	528	1	ENST00000307078.5:c.944C>T	p.Thr315Met	p.T315M	ENST00000307078	NM_004655.3	315	aCg/aTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	130	547	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221239	1221240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	280	814	0	ENST00000326873.7:c.762_763insA	p.Phe255IlefsTer11	p.F255Ifs*11	ENST00000326873	NM_000455.4	254	-/A																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222967	5222967	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778392508		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	173	543	2	ENST00000357368.4:c.2836G>A	p.Val946Ile	p.V946I	ENST00000357368	NM_002850.3	946	Gtc/Atc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	100	757	0	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602587	10602587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1197443517		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	120	703	1	ENST00000171111.5:c.991G>A	p.Ala331Thr	p.A331T	ENST00000171111	NM_203500.1	331	Gcg/Acg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11031345	11031345	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752773089		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	249	785	1	ENST00000327064.4:c.1345G>A	p.Asp449Asn	p.D449N	ENST00000327064	NM_199141.1	449	Gac/Aac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098351	11098351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763054014		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	167	545	0	ENST00000344626.4:c.869C>T	p.Ala290Val	p.A290V	ENST00000344626	NM_003072.3	290	gCg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136144	11136144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	289	785	0	ENST00000344626.4:c.3128G>A	p.Arg1043Gln	p.R1043Q	ENST00000344626	NM_003072.3	1043	cGg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15278138	15278138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756495084		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	153	772	0	ENST00000263388.2:c.5284G>A	p.Val1762Met	p.V1762M	ENST00000263388	NM_000435.2	1762	Gtg/Atg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	220	862	1	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218419	36218419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747829749		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	190	731	1	ENST00000222270.7:c.4198C>T	p.Arg1400Cys	p.R1400C	ENST00000222270	NM_014727.1	1400	Cgc/Tgc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791001	42791001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	195	651	0	ENST00000575354.2:c.146C>A	p.Pro49His	p.P49H	ENST00000575354	NM_015125.3	49	cCt/cAt																																																																														
CIC	23152	MSKCC	GRCh37	19	42798406	42798406	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	231	804	0	ENST00000575354.2:c.4281del	p.Lys1428ArgfsTer26	p.K1428Rfs*26	ENST00000575354	NM_015125.3	1426	aCc/ac																																																																														
CIC	23152	MSKCC	GRCh37	19	42798778	42798815	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGGAGCTAGAGTATGACAAGGTGCCATACTCCTCCC	TGGGGAGCTAGAGTATGACAAGGTGCCATACTCCTCCC	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	55	710	1	ENST00000575354.2:c.4352_4389del	p.Gly1451AlafsTer50	p.G1451Afs*50	ENST00000575354	NM_015125.3	1450	ctTGGGGAGCTAGAGTATGACAAGGTGCCATACTCCTCCCtg/cttg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902266	50902268	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs766482335		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	75	877	8	ENST00000440232.2:c.169_171del	p.Glu57del	p.E57del	ENST00000440232	NM_002691.3	53	cAGGag/cag																																																																														
ALK	238	MSKCC	GRCh37	2	29436865	29436865	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	51	617	0	ENST00000389048.3:c.3728del	p.Asn1243ThrfsTer15	p.N1243Tfs*15	ENST00000389048	NM_004304.4	1243	aAc/ac																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027196	48027196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	151	477	0	ENST00000234420.5:c.2079del	p.Lys693AsnfsTer43	p.K693Nfs*43	ENST00000234420	NM_000179.2	692	Aaa/aa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047329	128047329	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748503195		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	46	592	0	ENST00000285398.2:c.593G>A	p.Arg198His	p.R198H	ENST00000285398	NM_000122.1	198	cGc/cAc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198272772	198272772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1360040192		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	178	650	0	ENST00000335508.6:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000335508	NM_012433.2	397	Cgc/Tgc																																																																														
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	172	576	3	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795061	242795061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1203794937		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	65	939	0	ENST00000334409.5:c.148G>A	p.Ala50Thr	p.A50T	ENST00000334409	NM_005018.2	50	Gcc/Acc																																																																														
PAK7	0	MSKCC	GRCh37	20	9543581	9543581	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	242	666	0	ENST00000353224.5:c.1573T>G	p.Phe525Val	p.F525V	ENST00000353224	NM_177990.2	525	Ttt/Gtt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827927	40827927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536150112		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	208	624	1	ENST00000373198.4:c.2501G>A	p.Arg834His	p.R834H	ENST00000373198	NM_133170.3	834	cGc/cAc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961325	54961325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	40	598	1	ENST00000312783.6:c.307C>T	p.Pro103Ser	p.P103S	ENST00000312783	NM_198436.1	103	Cca/Tca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	37	397	0	ENST00000409792.3:c.843del	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa																																																																														
MITF	4286	MSKCC	GRCh37	3	69990415	69990415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764477527		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	88	409	0	ENST00000352241.4:c.695G>A	p.Ser232Asn	p.S232N	ENST00000352241	NM_198159.2	232	aGc/aAc																																																																														
ATR	545	MSKCC	GRCh37	3	142281238	142281238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886058056		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	85	497	1	ENST00000350721.4:c.1006C>T	p.Arg336Trp	p.R336W	ENST00000350721	NM_001184.3	336	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	50	697	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519941		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	19	372	0	ENST00000263967.3:c.1031T>C	p.Val344Ala	p.V344A	ENST00000263967	NM_006218.2	344	gTg/gCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	132	380	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198179	185198179	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	217	597	0	ENST00000265026.3:c.2661C>G	p.Asp887Glu	p.D887E	ENST00000265026	NM_004721.4	887	gaC/gaG																																																																														
TET2	54790	MSKCC	GRCh37	4	106164772	106164772	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761811530		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	197	553	0	ENST00000380013.4:c.3640C>T	p.Arg1214Trp	p.R1214W	ENST00000380013	NM_001127208.2	1214	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	21	272	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518216	187518216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	179	415	0	ENST00000441802.2:c.12478C>T	p.Arg4160Cys	p.R4160C	ENST00000441802	NM_005245.3	4160	Cgt/Tgt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	92	388	1	ENST00000303115.3:c.361del	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	282	574	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670061	86670061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	139	419	0	ENST00000274376.6:c.1858C>A	p.Leu620Met	p.L620M	ENST00000274376	NM_002890.2	620	Ctg/Atg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149456995	149456995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41338945		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	155	467	0	ENST00000286301.3:c.733G>A	p.Ala245Thr	p.A245T	ENST00000286301	NM_005211.3	245	Gca/Aca																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721847	176721847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	192	575	2	ENST00000439151.2:c.7478C>T	p.Ala2493Val	p.A2493V	ENST00000439151	NM_022455.4	2493	gCc/gTc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797707	32797707	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	183	521	0	ENST00000374899.4:c.1795G>T	p.Asp599Tyr	p.D599Y	ENST00000374899	NM_018833.2	599	Gat/Tat																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805738	32805739	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	170	708	0	ENST00000374899.4:c.272dup	p.Ala92SerfsTer75	p.A92Sfs*75	ENST00000374899	NM_018833.2	91	cca/ccCa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508793	106508793	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370152741		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	170	681	0	ENST00000359195.3:c.787G>A	p.Glu263Lys	p.E263K	ENST00000359195	NM_002649.2	263	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	159	475	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538819	23538819	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764325622		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	184	509	0	ENST00000380871.4:c.620G>A	p.Arg207Gln	p.R207Q	ENST00000380871	NM_006167.3	207	cGg/cAg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271163	38271163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17182456		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	148	562	0	ENST00000425967.3:c.2545G>A	p.Gly849Arg	p.G849R	ENST00000425967	NM_001174067.1	849	Gga/Aga																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964427	70964427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	219	555	0	ENST00000276594.2:c.1601G>A	p.Ser534Asn	p.S534N	ENST00000276594	NM_024504.3	534	aGc/aAc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741649	145741649	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1292831710		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	242	802	0	ENST00000428558.2:c.854del	p.Pro285HisfsTer8	p.P285Hfs*8	ENST00000428558	NM_004260.3	285	cCa/ca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	181	511	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	181	511	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	181	511	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	148	519	0	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	148	519	0	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
ABL1	25	MSKCC	GRCh37	9	133750371	133750372	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	201	639	0	ENST00000318560.5:c.1206dup	p.Ile403HisfsTer42	p.I403Hfs*42	ENST00000318560	NM_005157.4	401	ttc/ttCc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409991	139409991	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	265	866	0	ENST00000277541.6:c.1847del	p.Gly616AlafsTer15	p.G616Afs*15	ENST00000277541	NM_017617.3	616	gGc/gc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139410102	139410102	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1458789810		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	262	798	0	ENST00000277541.6:c.1736C>T	p.Ser579Phe	p.S579F	ENST00000277541	NM_017617.3	579	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417475	139417475	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761616770		P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	66	778	4	ENST00000277541.6:c.569G>A	p.Arg190His	p.R190H	ENST00000277541	NM_017617.3	190	cGc/cAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	58	722	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	277	874	0	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	25	65	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	69	477	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	57	347	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749415085		P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	41	323	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	49	295	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519927		P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	48	458	0	ENST00000263967.3:c.1625A>C	p.Glu542Ala	p.E542A	ENST00000263967	NM_006218.2	542	gAa/gCa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	15	122	2	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																																																														
FH	2271	MSKCC	GRCh37	1	241680522	241680522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778578307		P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	49	332	0	ENST00000366560.3:c.227C>T	p.Thr76Met	p.T76M	ENST00000366560	NM_000143.3	76	aCg/aTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	70	711	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	38	265	0	ENST00000262189.6:c.427del	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013720	170013720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	36	353	2	ENST00000295797.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000295797	NM_002740.5	480	cGc/cAc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504339	186504339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	20	291	0	ENST00000323963.5:c.681del	p.Lys227AsnfsTer3	p.K227Nfs*3	ENST00000323963		226	Aaa/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101375	27101375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	108	478	0	ENST00000324856.7:c.4657C>T	p.Pro1553Ser	p.P1553S	ENST00000324856	NM_006015.4	1553	Ccc/Tcc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259382	16259382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151306071		P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	73	356	2	ENST00000375759.3:c.6647C>T	p.Ala2216Val	p.A2216V	ENST00000375759	NM_015001.2	2216	gCt/gTt																																																																														
STK40	83931	MSKCC	GRCh37	1	36807438	36807438	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752175420		P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	123	721	0	ENST00000373129.3:c.1226C>T	p.Pro409Leu	p.P409L	ENST00000373129	NM_032017.1	409	cCg/cTg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115282343	115282343	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	31	385	0	ENST00000438362.2:c.307A>G	p.Asn103Asp	p.N103D	ENST00000438362	NM_001242891.1	103	Aat/Gat																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367068	15367068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	42	252	0	ENST00000263377.2:c.1558G>A	p.Ala520Thr	p.A520T	ENST00000263377	NM_058243.2	520	Gcc/Acc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52723026	52723026	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	110	574	0	ENST00000322088.6:c.1211T>C	p.Leu404Pro	p.L404P	ENST00000322088	NM_014225.5	404	cTg/cCg																																																																														
ALK	238	MSKCC	GRCh37	2	29474004	29474004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	110	675	1	ENST00000389048.3:c.2171A>G	p.Gln724Arg	p.Q724R	ENST00000389048	NM_004304.4	724	cAg/cGg																																																																														
MYC	4609	MSKCC	GRCh37	8	128752969	128752970	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAGCGCCAGAGGAGGAACGAGCA			P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	56	417	0	ENST00000377970.2:c.1153_1154insAGGAGCGCCAGAGGAGGAACGAGC	p.Glu384_Leu385insGlnGluArgGlnArgArgAsnGlu	p.E384_L385insQERQRRNE	ENST00000377970	NM_002467.4	377	ttg/ttGGAGCGCCAGAGGAGGAACGAGCAg																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22008874	22008874	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780316323		P-0043044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	41	507	0	ENST00000276925.6:c.79G>A	p.Val27Met	p.V27M	ENST00000276925	NM_004936.3	27	Gtg/Atg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	9	457	0	ENST00000371953.3:c.376G>T	p.Ala126Ser	p.A126S	ENST00000371953	NM_000314.4	126	Gct/Tct																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0043070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	20	316	0	ENST00000274335.5:c.1392_1403del	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0043134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	48	569	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692805	89692805	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204928		P-0043134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	68	348	0	ENST00000371953.3:c.289C>T	p.Gln97Ter	p.Q97*	ENST00000371953	NM_000314.4	97	Cag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589625	67589627	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0043134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	51	235	0	ENST00000274335.5:c.1390_1392del	p.Asp464del	p.D464del	ENST00000274335		463	tATGat/tat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692806	89692806	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	115	347	0	ENST00000371953.3:c.290del	p.Gln97ArgfsTer2	p.Q97Rfs*2	ENST00000371953	NM_000314.4	97	cAg/cg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114155	115114157	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs771239166		P-0043134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	94	689	0	ENST00000257566.3:c.1060_1062del	p.Ser354del	p.S354del	ENST00000257566	NM_016569.3	354	TCT/-																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518710	176518710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1289445624		P-0043134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	56	660	0	ENST00000292408.4:c.628G>A	p.Val210Met	p.V210M	ENST00000292408	NM_213647.1	210	Gtg/Atg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372518	55372519	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0043134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	254	908	1	ENST00000297316.4:c.1208_1209delinsTT	p.Ser403Ile	p.S403I	ENST00000297316	NM_022454.3	403	aGC/aTT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993922	72993922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	54	656	0	ENST00000268489.5:c.123G>T	p.Gln41His	p.Q41H	ENST00000268489	NM_006885.3	41	caG/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519986		P-0043244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	15	728	0	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0043330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	411	646	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175897	112175897	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	57	314	0	ENST00000257430.4:c.4606G>T	p.Glu1536Ter	p.E1536*	ENST00000257430	NM_000038.5	1536	Gaa/Taa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852216		P-0043330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	310	490	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943692	9943692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749504561		P-0043330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	159	782	1	ENST00000330684.3:c.1249G>A	p.Val417Ile	p.V417I	ENST00000330684	NM_001134407.1	417	Gtc/Atc																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158554	26158554	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	558	599	0	ENST00000289316.2:c.157A>G	p.Thr53Ala	p.T53A	ENST00000289316	NM_138720.2	53	Acc/Gcc																																																																														
APC	324	MSKCC	GRCh37	5	112170705	112170705	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	165	557	1	ENST00000257430.4:c.1801G>T	p.Glu601Ter	p.E601*	ENST00000257430	NM_000038.5	601	Gag/Tag																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39322565	39322565	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1442884461		P-0043330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	250	552	1	ENST00000373001.3:c.427G>A	p.Val143Ile	p.V143I	ENST00000373001	NM_022157.3	143	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579369	7579370	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGCC			P-0043330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	475	825	0	ENST00000269305.4:c.313_317dup	p.Ser106ArgfsTer19	p.S106Rfs*19	ENST00000269305	NM_001126112.2	106	agc/agGGCAGc																																																																														
KDR	3791	MSKCC	GRCh37	4	55984928	55984928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	86	570	0	ENST00000263923.4:c.201G>T	p.Gln67His	p.Q67H	ENST00000263923	NM_002253.2	67	caG/caT																																																																														
APC	324	MSKCC	GRCh37	5	112174389	112174389	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	49	339	0	ENST00000257430.4:c.3098A>T	p.Asp1033Val	p.D1033V	ENST00000257430	NM_000038.5	1033	gAt/gTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306604	41306604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	251	755	0	ENST00000373198.4:c.1055C>G	p.Pro352Arg	p.P352R	ENST00000373198	NM_133170.3	352	cCc/cGc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348705	118348705	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs71482146		P-0043381-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			108	125	254	0	ENST00000534358.1:c.3358G>A	p.Glu1120Lys	p.E1120K	ENST00000534358	NM_005933.3	1120	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397516896		P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	17	172	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653814	89653814	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780004		P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	8	167	0	ENST00000371953.3:c.112C>T	p.Pro38Ser	p.P38S	ENST00000371953	NM_000314.4	38	Cct/Tct																																																																														
RHOA	387	MSKCC	GRCh37	3	49412905	49412905	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519951		P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	120	513	0	ENST00000418115.1:c.118G>C	p.Glu40Gln	p.E40Q	ENST00000418115	NM_001664.2	40	Gag/Cag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244079	46244079	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	107	318	0	ENST00000334344.6:c.2173C>T	p.Gln725Ter	p.Q725*	ENST00000334344	NM_152641.2	725	Cag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032197	10032197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774932381		P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	105	610	1	ENST00000330684.3:c.626C>T	p.Ser209Phe	p.S209F	ENST00000330684	NM_001134407.1	209	tCc/tTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554918	106554918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs529025464		P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	98	477	0	ENST00000369096.4:c.2035C>T	p.Arg679Cys	p.R679C	ENST00000369096	NM_001198.3	679	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	95	599	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152132751	152132751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	121	450	0	ENST00000262189.6:c.121C>T	p.Arg41Cys	p.R41C	ENST00000262189	NM_170606.2	41	Cgc/Tgc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517394	176517394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	69	451	0	ENST00000292408.4:c.95C>T	p.Pro32Leu	p.P32L	ENST00000292408	NM_213647.1	32	cCc/cTc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026897	6026897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	66	331	0	ENST00000265849.7:c.1499C>T	p.Ser500Phe	p.S500F	ENST00000265849	NM_000535.5	500	tCc/tTc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026221	48026221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	60	278	0	ENST00000234420.5:c.1099C>T	p.His367Tyr	p.H367Y	ENST00000234420	NM_000179.2	367	Cat/Tat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100180	27100180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	93	444	0	ENST00000324856.7:c.3976C>T	p.Pro1326Ser	p.P1326S	ENST00000324856	NM_006015.4	1326	Ccg/Tcg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510784	120510784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs312262794		P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	74	441	0	ENST00000256646.2:c.1180C>T	p.Pro394Ser	p.P394S	ENST00000256646	NM_024408.3	394	Ccc/Tcc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948344	71948344	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1424	180	957	0	ENST00000298229.2:c.3056T>A	p.Ile1019Asn	p.I1019N	ENST00000298229	NM_001567.3	1019	aTt/aAt																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047165	77047165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	371	493	0	ENST00000356341.3:c.1379G>A	p.Gly460Glu	p.G460E	ENST00000356341	NM_002576.4	460	gGg/gAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343739	118343739	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	67	355	0	ENST00000534358.1:c.1865T>A	p.Leu622Ter	p.L622*	ENST00000534358	NM_005933.3	622	tTa/tAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618776	37618776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	113	547	1	ENST00000447079.4:c.452C>T	p.Ser151Leu	p.S151L	ENST00000447079	NM_015083.1	151	tCa/tTa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221249	5221249	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	131	664	0	ENST00000357368.4:c.3217C>A	p.Leu1073Ile	p.L1073I	ENST00000357368	NM_002850.3	1073	Ctc/Atc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965984	18965984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	151	681	1	ENST00000262803.5:c.1477C>T	p.Pro493Ser	p.P493S	ENST00000262803	NM_002911.3	493	Ccg/Tcg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224559	36224560	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	181	902	1	ENST00000222270.7:c.7021_7022delinsAA	p.Gly2341Lys	p.G2341K	ENST00000222270	NM_014727.1	2341	GGg/AAg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021717	31021718	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	83	429	1	ENST00000375687.4:c.1716_1717delinsTT	p.Arg573Trp	p.R573W	ENST00000375687	NM_015338.5	572	atCCgg/atTTgg																																																																														
NF2	4771	MSKCC	GRCh37	22	30070923	30070923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	139	606	0	ENST00000338641.4:c.1439C>G	p.Thr480Arg	p.T480R	ENST00000338641	NM_000268.3	480	aCg/aGg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202783	128202784	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	167	691	0	ENST00000341105.2:c.936_937delinsTT	p.His313Tyr	p.H313Y	ENST00000341105	NM_032638.4	312	ggCCac/ggTTac																																																																														
KDR	3791	MSKCC	GRCh37	4	55979637	55979637	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	48	312	0	ENST00000263923.4:c.810del	p.Lys271AsnfsTer3	p.K271Nfs*3	ENST00000263923	NM_002253.2	270	aaG/aa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873932	151873932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	44	275	0	ENST00000262189.6:c.8606C>T	p.Ser2869Phe	p.S2869F	ENST00000262189	NM_170606.2	2869	tCt/tTt																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346102	152346102	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	80	338	0	ENST00000359321.1:c.468G>A	p.Trp156Ter	p.W156*	ENST00000359321	NM_005431.1	156	tgG/tgA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139411724	139411725	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	129	718	0	ENST00000277541.6:c.1554_1555delinsAA	p.Gly519Ser	p.G519S	ENST00000277541	NM_017617.3	518	acGGgc/acAAgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76949379	76949379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	23	184	0	ENST00000373344.5:c.418G>A	p.Asp140Asn	p.D140N	ENST00000373344	NM_000489.3	140	Gat/Aat																																																																														
VHL	7428	MSKCC	GRCh37	3	10183822	10183823	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	49	472	0	ENST00000256474.2:c.292dup	p.Tyr98LeufsTer34	p.Y98Lfs*34	ENST00000256474	NM_000551.3	97	-/T																																																																														
TET2	54790	MSKCC	GRCh37	4	106182958	106182958	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	42	276	0	ENST00000380013.4:c.3997del	p.Met1333TrpfsTer30	p.M1333Wfs*30	ENST00000380013	NM_001127208.2	1333	Atg/tg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0043533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	34	324	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151842344	151842344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs749571160		P-0043533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	30	210	1	ENST00000262189.6:c.14068C>T	p.Arg4690Ter	p.R4690*	ENST00000262189	NM_170606.2	4690	Cga/Tga																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796990	78796990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1301463689		P-0043533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	27	408	0	ENST00000306801.3:c.1103C>T	p.Pro368Leu	p.P368L	ENST00000306801	NM_020761.2	368	cCg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431364	49431364	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	21	416	0	ENST00000301067.7:c.9775G>C	p.Glu3259Gln	p.E3259Q	ENST00000301067	NM_003482.3	3259	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431373	49431373	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	26	445	0	ENST00000301067.7:c.9766G>C	p.Glu3256Gln	p.E3256Q	ENST00000301067	NM_003482.3	3256	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443575	49443575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	69	490	0	ENST00000301067.7:c.3796G>T	p.Glu1266Ter	p.E1266*	ENST00000301067	NM_003482.3	1266	Gag/Tag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40478145	40478146	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTTGAGGCCTTGGTGATACAC			P-0043533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	73	364	0	ENST00000264657.5:c.1333_1353dup	p.Val445_Lys451dup	p.V445_K451dup	ENST00000264657	NM_139276.2	445	-/GTGTATCACCAAGGCCTCAAG																																																																														
CALR	811	MSKCC	GRCh37	19	13054620	13054620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	44	320	0	ENST00000316448.5:c.1147G>A	p.Glu383Lys	p.E383K	ENST00000316448	NM_004343.3	383	Gag/Aag																																																																														
STK19	8859	MSKCC	GRCh37	6	31940134	31940134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	42	581	0	ENST00000375331.2:c.276C>G	p.Phe92Leu	p.F92L	ENST00000375331	NM_004197.1	92	ttC/ttG																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005713	150005713	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0043533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	43	207	0	ENST00000253339.5:c.512C>G	p.Ser171Ter	p.S171*	ENST00000253339		171	tCa/tGa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410364	63410364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	67	621	1	ENST00000330258.3:c.2803G>A	p.Glu935Lys	p.E935K	ENST00000330258	NM_152424.3	935	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	28	363	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0043582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	11	690	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0043582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	23	707	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0043592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	118	442	4	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0043592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			765	521	1039	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741472	145741472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745874353		P-0043592-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	203	1040	0	ENST00000428558.2:c.1031G>A	p.Arg344Gln	p.R344Q	ENST00000428558	NM_004260.3	344	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720828	89720828	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	41	174	0	ENST00000371953.3:c.981del	p.Ala328GlnfsTer16	p.A328Qfs*16	ENST00000371953	NM_000314.4	327	Aaa/aa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499655	18499655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	100	374	0	ENST00000266497.5:c.1510G>T	p.Asp504Tyr	p.D504Y	ENST00000266497		504	Gat/Tat																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67459123	67459123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	145	878	0	ENST00000327367.4:c.539C>A	p.Pro180Gln	p.P180Q	ENST00000327367	NM_005902.3	180	cCa/cAa																																																																														
YES1	7525	MSKCC	GRCh37	18	739732	739733	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0043655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	94	266	0	ENST00000314574.4:c.1137+2dup		p.X379_splice	ENST00000314574	NM_005433.3	379																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	68	483	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782664		P-0043706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	71	515	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696597	47696597	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	36	320	0	ENST00000347630.2:c.351G>A	p.Met117Ile	p.M117I	ENST00000347630	NM_001007230.1	117	atG/atA																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149503813	149503813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1283745894		P-0043706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	53	495	0	ENST00000261799.4:c.2023G>A	p.Gly675Arg	p.G675R	ENST00000261799	NM_002609.3	675	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782518		P-0043710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	110	226	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0043710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	219	459	1	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913237		P-0043710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	213	273	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112174154	112174154	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	118	279	0	ENST00000257430.4:c.2863G>T	p.Glu955Ter	p.E955*	ENST00000257430	NM_000038.5	955	Gaa/Taa																																																																														
AR	367	MSKCC	GRCh37	X	66765620	66765620	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370893700		P-0043710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	163	726	1	ENST00000374690.3:c.632C>T	p.Ala211Val	p.A211V	ENST00000374690	NM_000044.3	211	gCg/gTg																																																																														
SDHD	6392	MSKCC	GRCh37	11	111959732	111959732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	236	478	0	ENST00000375549.3:c.311A>G	p.His104Arg	p.H104R	ENST00000375549	NM_003002.3	104	cAc/cGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	13	246	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	30	249	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs747241612		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	38	203	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																														
APC	324	MSKCC	GRCh37	5	112175756	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	69	157	0	ENST00000257430.4:c.4466del	p.Leu1489TyrfsTer18	p.L1489Yfs*18	ENST00000257430	NM_000038.5	1489	Tta/ta																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38282215	38282215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	68	431	0	ENST00000425967.3:c.841C>T	p.Arg281Trp	p.R281W	ENST00000425967	NM_001174067.1	281	Cgg/Tgg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7989385	7989385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200663524		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	83	638	1	ENST00000319144.4:c.301G>A	p.Ala101Thr	p.A101T	ENST00000319144	NM_001139.2	101	Gcc/Acc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625252	69625252	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782761826		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	63	662	0	ENST00000334134.2:c.541C>T	p.Arg181Cys	p.R181C	ENST00000334134	NM_005247.2	181	Cgc/Tgc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431404	121431404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780357		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	71	517	0	ENST00000257555.6:c.608G>A	p.Arg203His	p.R203H	ENST00000257555		203	cGt/cAt																																																																														
JUN	3725	MSKCC	GRCh37	1	59248215	59248216	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	15	23	0	ENST00000371222.2:c.527dup	p.Asn177GlnfsTer133	p.N177Qfs*133	ENST00000371222	NM_002228.3	176	ttc/ttTc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900969	114900969	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	37	342	0	ENST00000543371.1:c.581del	p.Pro194LeufsTer31	p.P194Lfs*31	ENST00000543371	NM_001198531.1	193	caC/ca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983936	15983936	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	40	237	0	ENST00000268712.3:c.3283G>T	p.Glu1095Ter	p.E1095*	ENST00000268712	NM_006311.3	1095	Gaa/Taa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120159	70120160	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	35	319	0	ENST00000245479.2:c.1163_1164dup	p.Pro389SerfsTer15	p.P389Sfs*15	ENST00000245479	NM_000346.3	387	-/GA																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268713	46268713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	67	363	0	ENST00000371998.3:c.2998C>A	p.Gln1000Lys	p.Q1000K	ENST00000371998		1000	Caa/Aaa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589204	67589221	+	inframe_deletion	In_Frame_Del	DEL	TTCAGTTCTGTGGTTGAA	TTCAGTTCTGTGGTTGAA	-			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	59	201	0	ENST00000274335.5:c.1194_1211del	p.Phe398_Glu403del	p.F398_E403del	ENST00000274335		398	TTCAGTTCTGTGGTTGAA/-																																																																														
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994246	21994246	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1316222103		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	40	504	0				ENST00000428597																																																																																	
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994246	21994246	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1316222103		P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	40	504	0				ENST00000428597																																																																																	
PPP6C	5537	MSKCC	GRCh37	9	127915929	127915929	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	56	311	0	ENST00000373547.4:c.552A>T	p.Glu184Asp	p.E184D	ENST00000373547	NM_002721.4	184	gaA/gaT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039297	47039297	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	82	591	0	ENST00000329236.7:c.689T>C	p.Leu230Pro	p.L230P	ENST00000329236	NM_001204466.1	230	cTg/cCg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	76	263	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913471		P-0043732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	3272	635	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
APC	324	MSKCC	GRCh37	5	112175630	112175630	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	64	255	0	ENST00000257430.4:c.4339del	p.Gln1447LysfsTer26	p.Q1447Kfs*26	ENST00000257430	NM_000038.5	1447	Caa/aa																																																																														
EP300	2033	MSKCC	GRCh37	22	41553260	41553260	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	155	448	0	ENST00000263253.7:c.3349T>G	p.Tyr1117Asp	p.Y1117D	ENST00000263253	NM_001429.3	1117	Tat/Gat																																																																														
HGF	3082	MSKCC	GRCh37	7	81386614	81386614	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	37	262	0	ENST00000222390.5:c.373A>T	p.Ile125Phe	p.I125F	ENST00000222390	NM_000601.4	125	Att/Ttt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662338	227662338	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147944503		P-0043783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	263	571	0	ENST00000305123.5:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000305123	NM_005544.2	373	Cgc/Tgc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110150	3110150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762714189		P-0043783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	203	356	0	ENST00000078429.4:c.140C>T	p.Thr47Met	p.T47M	ENST00000078429	NM_002067.2	47	aCg/aTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42795881	42795905	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGCCCCCCAGCAAGGTGAGGGC	CCCAGCCCCCCAGCAAGGTGAGGGC	-			P-0043783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	285	673	0	ENST00000575354.2:c.2871_2886+9del		p.X957_splice	ENST00000575354	NM_015125.3	957																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277867	41277867	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	137	386	0	ENST00000349496.5:c.1831C>T	p.Gln611Ter	p.Q611*	ENST00000349496	NM_001904.3	611	Caa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47059231	47059231	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	126	286	0	ENST00000409792.3:c.7432-2A>G		p.X2478_splice	ENST00000409792	NM_014159.6	2478																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225494	26225494	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	167	368	0	ENST00000360408.1:c.112A>C	p.Lys38Gln	p.K38Q	ENST00000360408	NM_003532.2	38	Aag/Cag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184023	123184061	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCCCCCATTCAGTGATGCGATAGCTGAAATTCGAGCTA	TTCCCCCATTCAGTGATGCGATAGCTGAAATTCGAGCTA	-			P-0043783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	93	94	0	ENST00000218089.9:c.894-11_921del		p.X298_splice	ENST00000218089	NM_001042749.1	298																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	12	246	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481806	56481806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	33	484	0	ENST00000267101.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000267101	NM_001982.3	245	gCc/gTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913228		P-0043930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	22	288	0	ENST00000349496.5:c.109T>G	p.Ser37Ala	p.S37A	ENST00000349496	NM_001904.3	37	Tct/Gct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0043933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	197	652	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625090	69625090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	172	481	0	ENST00000334134.2:c.703G>A	p.Glu235Lys	p.E235K	ENST00000334134	NM_005247.2	235	Gag/Aag																																																																														
AGO2	27161	MSKCC	GRCh37	8	141568614	141568614	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs755874332		P-0043933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1240	172	578	0	ENST00000220592.5:c.848A>G	p.Asn283Ser	p.N283S	ENST00000220592	NM_012154.3	283	aAt/aGt																																																																														
POLE	5426	MSKCC	GRCh37	12	133249802	133249802	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	196	454	0	ENST00000320574.5:c.1421T>G	p.Val474Gly	p.V474G	ENST00000320574	NM_006231.2	474	gTc/gGc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28886237	28886237	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	93	337	0	ENST00000282397.4:c.3387-2A>G		p.X1129_splice	ENST00000282397	NM_002019.4	1129																																																																															
CDH1	999	MSKCC	GRCh37	16	68867279	68867279	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	120	430	0	ENST00000261769.5:c.2526del	p.Ala843LeufsTer3	p.A843Lfs*3	ENST00000261769	NM_004360.3	842	gcT/gc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117700251	117700251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	148	347	0	ENST00000368508.3:c.2568C>G	p.His856Gln	p.H856Q	ENST00000368508	NM_002944.2	856	caC/caG																																																																														
FANCC	2176	MSKCC	GRCh37	9	98011441	98011441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	246	413	0	ENST00000289081.3:c.133C>A	p.Leu45Ile	p.L45I	ENST00000289081	NM_000136.2	45	Cta/Ata																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	647	572	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	275	396	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	82	226	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120239	70120239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	670	560	0	ENST00000245479.2:c.1241C>A	p.Ser414Ter	p.S414*	ENST00000245479	NM_000346.3	414	tCg/tAg																																																																														
APC	324	MSKCC	GRCh37	5	112174213	112174214	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	96	304	0	ENST00000257430.4:c.2926dup	p.Arg976LysfsTer9	p.R976Kfs*9	ENST00000257430	NM_000038.5	974	-/A																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323270	31323273	+	frameshift_variant	Frame_Shift_Del	DEL	GTCA	GTCA	-			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	110	245	0	ENST00000412585.2:c.716_719del	p.Leu239ProfsTer57	p.L239Pfs*57	ENST00000412585	NM_005514.6	239	cTGACc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105562	27105563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	146	436	0	ENST00000324856.7:c.5175dup	p.Glu1726Ter	p.E1726*	ENST00000324856	NM_006015.4	1725	att/aTtt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435901	49435901	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	176	681	0	ENST00000301067.7:c.6080A>G	p.Asn2027Ser	p.N2027S	ENST00000301067	NM_003482.3	2027	aAt/aGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879504	151879504	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	153	378	0	ENST00000262189.6:c.5441C>G	p.Pro1814Arg	p.P1814R	ENST00000262189	NM_170606.2	1814	cCt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	32	471	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	19	553	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	173	369	3	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	173	369	3	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1307	74	571	0	ENST00000171111.5:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000171111	NM_203500.1	422	Gat/Aat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs149680468		P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	42	267	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37649052	37649052	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	113	390	1	ENST00000447079.4:c.2157G>A	p.Trp719Ter	p.W719*	ENST00000447079	NM_015083.1	719	tgG/tgA																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257552	19257552	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	93	571	0	ENST00000162023.5:c.674C>T	p.Ser225Phe	p.S225F	ENST00000162023		225	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	173	369	3	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713546	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	75	422	2	ENST00000359013.4:c.946_948del	p.Lys316del	p.K316del	ENST00000359013	NM_001024847.2	315	gAGAag/gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	93	383	4	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849053	156849053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369353892		P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	49	579	0	ENST00000524377.1:c.1945C>T	p.Arg649Trp	p.R649W	ENST00000524377	NM_002529.3	649	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440154	49440154	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	121	523	0	ENST00000301067.7:c.4472G>A	p.Trp1491Ter	p.W1491*	ENST00000301067	NM_003482.3	1491	tGg/tAg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396838	396838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759464398		P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	101	606	1	ENST00000262320.3:c.188G>A	p.Arg63His	p.R63H	ENST00000262320	NM_003502.3	63	cGc/cAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462965	120462965	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	58	389	0	ENST00000256646.2:c.5366G>A	p.Trp1789Ter	p.W1789*	ENST00000256646	NM_024408.3	1789	tGg/tAg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877348	28877348	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772567599		P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	108	426	2	ENST00000282397.4:c.3973C>T	p.Pro1325Ser	p.P1325S	ENST00000282397	NM_002019.4	1325	Cca/Tca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821605	72821605	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769543239		P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	10	53	0	ENST00000268489.5:c.10570G>A	p.Gly3524Ser	p.G3524S	ENST00000268489	NM_006885.3	3524	Ggc/Agc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25991711	25991711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	46	280	0	ENST00000435504.4:c.531G>T	p.Lys177Asn	p.K177N	ENST00000435504		177	aaG/aaT																																																																														
ATR	545	MSKCC	GRCh37	3	142234348	142234348	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	62	217	0	ENST00000350721.4:c.4392T>G	p.Ser1464Arg	p.S1464R	ENST00000350721	NM_001184.3	1464	agT/agG																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139397655	139397656	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	78	534	0	ENST00000277541.6:c.5145dup	p.Tyr1716LeufsTer9	p.Y1716Lfs*9	ENST00000277541	NM_017617.3	1715	-/C																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399933	139399933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	108	609	1	ENST00000277541.6:c.4415G>T	p.Cys1472Phe	p.C1472F	ENST00000277541	NM_017617.3	1472	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	73	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0044008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	59	239	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916946	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0044008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	105	358	0	ENST00000263967.3:c.332_334del	p.Lys111del	p.K111del	ENST00000263967	NM_006218.2	111	AAG/-																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0044008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	102	238	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	313	682	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0044012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	73	240	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653805	89653805	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876659443		P-0044012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	73	305	0	ENST00000371953.3:c.103A>G	p.Met35Val	p.M35V	ENST00000371953	NM_000314.4	35	Atg/Gtg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653860	89653860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	60	286	0	ENST00000371953.3:c.158T>C	p.Val53Ala	p.V53A	ENST00000371953	NM_000314.4	53	gTa/gCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916945	178916956	+	inframe_deletion	In_Frame_Del	DEL	AGATCCTCAATC	AGATCCTCAATC	-			P-0044012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	60	302	0	ENST00000263967.3:c.332_343del	p.Lys111_Asn114del	p.K111_N114del	ENST00000263967	NM_006218.2	111	aAGATCCTCAATCga/aga																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986559	36986560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	34	479	0	ENST00000354822.5:c.1129dup	p.Leu377ProfsTer62	p.L377Pfs*62	ENST00000354822	NM_001079668.2	377	ctg/cCtg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913474		P-0044050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	265	444	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121909229		P-0044050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	56	329	0	ENST00000371953.3:c.389G>C	p.Arg130Pro	p.R130P	ENST00000371953	NM_000314.4	130	cGa/cCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916949	+	inframe_deletion	In_Frame_Del	DEL	AAGATC	AAGATC	-			P-0044050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	11	259	0	ENST00000263967.3:c.331_336del	p.Lys111_Ile112del	p.K111_I112del	ENST00000263967	NM_006218.2	111	AAGATC/-																																																																														
POLE	5426	MSKCC	GRCh37	12	133220545	133220545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768504121		P-0044050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	94	423	0	ENST00000320574.5:c.4168C>T	p.Arg1390Cys	p.R1390C	ENST00000320574	NM_006231.2	1390	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971166	21971176	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCAGCAGCT	CAGCAGCAGCT	-			P-0044050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	199	277	0	ENST00000304494.5:c.182_192del	p.Glu61AlafsTer55	p.E61Afs*55	ENST00000304494	NM_000077.4	61	gAGCTGCTGCTG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971166	21971176	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCAGCAGCT	CAGCAGCAGCT	-			P-0044050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	199	277	0	ENST00000304494.5:c.182_192del	p.Glu61AlafsTer55	p.E61Afs*55	ENST00000304494	NM_000077.4	61	gAGCTGCTGCTG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971166	21971176	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCAGCAGCT	CAGCAGCAGCT	-			P-0044050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	199	277	0	ENST00000304494.5:c.182_192del	p.Glu61AlafsTer55	p.E61Afs*55	ENST00000304494	NM_000077.4	61	gAGCTGCTGCTG/g																																																																														
CTCF	10664	MSKCC	GRCh37	16	67670668	67670668	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1396410914		P-0044050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	138	407	0	ENST00000264010.4:c.1913C>T	p.Pro638Leu	p.P638L	ENST00000264010	NM_006565.3	638	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	103	303	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	73	620	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs764146326		P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	146	666	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876658483		P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	77	681	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	27	298	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
RB1	5925	MSKCC	GRCh37	13	49027160	49027160	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	34	410	0	ENST00000267163.4:c.1727C>G	p.Ser576Ter	p.S576*	ENST00000267163	NM_000321.2	576	tCa/tGa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72890267	72890267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	36	472	0	ENST00000325599.8:c.415G>C	p.Glu139Gln	p.E139Q	ENST00000325599	NM_018130.2	139	Gaa/Caa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101612	27101612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	191	773	2	ENST00000324856.7:c.4899del	p.Met1634Ter	p.M1634*	ENST00000324856	NM_006015.4	1632	Ccc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578215	7578215	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	58	604	0	ENST00000269305.4:c.634T>G	p.Phe212Val	p.F212V	ENST00000269305	NM_001126112.2	212	Ttt/Gtt																																																																														
CDH1	999	MSKCC	GRCh37	16	68842468	68842468	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	56	510	0	ENST00000261769.5:c.529C>T	p.Gln177Ter	p.Q177*	ENST00000261769	NM_004360.3	177	Cag/Tag																																																																														
TEK	7010	MSKCC	GRCh37	9	27172700	27172700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	68	554	0	ENST00000380036.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000380036	NM_000459.3	239	Gaa/Aaa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965421	18965421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	51	345	0	ENST00000262803.5:c.1168G>C	p.Glu390Gln	p.E390Q	ENST00000262803	NM_002911.3	390	Gag/Cag																																																																														
TET1	80312	MSKCC	GRCh37	10	70406235	70406235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	58	537	0	ENST00000373644.4:c.3749C>T	p.Ser1250Leu	p.S1250L	ENST00000373644	NM_030625.2	1250	tCa/tTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70406543	70406543	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	63	632	0	ENST00000373644.4:c.4057C>G	p.Leu1353Val	p.L1353V	ENST00000373644	NM_030625.2	1353	Ctc/Gtc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307583	118307583	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	49	445	0	ENST00000534358.1:c.356C>A	p.Ser119Ter	p.S119*	ENST00000534358	NM_005933.3	119	tCg/tAg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43784613	43784613	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	52	466	0	ENST00000382044.4:c.61G>C	p.Asp21His	p.D21H	ENST00000382044	NM_001141980.1	21	Gat/Cat																																																																														
CDH1	999	MSKCC	GRCh37	16	68842376	68842376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	52	552	0	ENST00000261769.5:c.437C>T	p.Ser146Phe	p.S146F	ENST00000261769	NM_004360.3	146	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576872	7576872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	114	607	0	ENST00000269305.4:c.974G>C	p.Gly325Ala	p.G325A	ENST00000269305	NM_001126112.2	325	gGa/gCa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761243	59761243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	46	581	1	ENST00000259008.2:c.3164C>A	p.Ser1055Tyr	p.S1055Y	ENST00000259008	NM_032043.2	1055	tCc/tAc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56377272	56377272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779297336		P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	18	250	0	ENST00000348428.3:c.893G>A	p.Ser298Asn	p.S298N	ENST00000348428	NM_006785.3	298	aGt/aAt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965026	25965026	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	45	494	0	ENST00000435504.4:c.4180G>C	p.Glu1394Gln	p.E1394Q	ENST00000435504		1394	Gag/Cag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966179	25966179	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	66	579	0	ENST00000435504.4:c.3027G>C	p.Glu1009Asp	p.E1009D	ENST00000435504		1009	gaG/gaC																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72897392	72897392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	56	467	0	ENST00000325599.8:c.100G>C	p.Glu34Gln	p.E34Q	ENST00000325599	NM_018130.2	34	Gag/Cag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510036	187510036	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	37	419	0	ENST00000441802.2:c.13477T>A	p.Phe4493Ile	p.F4493I	ENST00000441802	NM_005245.3	4493	Ttt/Att																																																																														
RXRA	6256	MSKCC	GRCh37	9	137293529	137293529	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	77	781	0	ENST00000481739.1:c.80C>G	p.Ser27Cys	p.S27C	ENST00000481739	NM_002957.4	27	tCc/tGc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390822	139390822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	74	679	0	ENST00000277541.6:c.7369C>A	p.Leu2457Met	p.L2457M	ENST00000277541	NM_017617.3	2457	Ctg/Atg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402705	139402705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	62	671	1	ENST00000277541.6:c.3304G>A	p.Glu1102Lys	p.E1102K	ENST00000277541	NM_017617.3	1102	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76953113	76953113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	30	214	0	ENST00000373344.5:c.200C>G	p.Ser67Cys	p.S67C	ENST00000373344	NM_000489.3	67	tCt/tGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3860626	3860630	+	stop_gained	Nonsense_Mutation	ONP	GAAGT	GAAGT	TAAGG			P-0044060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	65	620	1	ENST00000262367.5:c.949_953delinsCCTTA	p.Thr317_Ser318delinsProTer	p.T317_S318delinsP*	ENST00000262367	NM_004380.2	317	ACTTCa/CCTTAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	64	396	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0044075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	121	567	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
BARD1	580	MSKCC	GRCh37	2	215632303	215632303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782003		P-0044075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	108	546	1	ENST00000260947.4:c.1471G>A	p.Gly491Arg	p.G491R	ENST00000260947	NM_000465.2	491	Ggg/Agg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640629	3640629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	181	779	0	ENST00000294008.3:c.3010C>T	p.Pro1004Ser	p.P1004S	ENST00000294008	NM_032444.2	1004	Ccc/Tcc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032194	26032194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	71	303	0	ENST00000244661.2:c.95C>G	p.Ala32Gly	p.A32G	ENST00000244661	NM_003537.3	32	gCt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0044131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	501	826	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MGA	23269	MSKCC	GRCh37	15	42042536	42042536	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	210	558	0	ENST00000219905.7:c.6731G>A	p.Trp2244Ter	p.W2244*	ENST00000219905	NM_001164273.1	2244	tGg/tAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	306	410	0				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10032356	10032356	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763500409		P-0044136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	132	615	0	ENST00000330684.3:c.467C>T	p.Thr156Met	p.T156M	ENST00000330684	NM_001134407.1	156	aCg/aTg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699372	47699372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	884	476	0	ENST00000347630.2:c.136G>A	p.Glu46Lys	p.E46K	ENST00000347630	NM_001007230.1	46	Gag/Aag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982416	201982417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	564	987	0	ENST00000359651.3:c.796dup	p.Ser266LysfsTer35	p.S266Kfs*35	ENST00000359651		265	-/A																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589607	67589607	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	212	272	0	ENST00000274335.5:c.1370A>C	p.Gln457Pro	p.Q457P	ENST00000274335		457	cAa/cCa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259308	89259308	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	111	473	0	ENST00000336596.2:c.452del	p.Ser151IlefsTer12	p.S151Ifs*12	ENST00000336596	NM_005233.5	151	aGt/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1295266	1295266	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	350	451	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0044137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	201	822	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	366	435	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248357	212248357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs879163362		P-0044137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	26	245	0	ENST00000342788.4:c.3910C>T	p.Arg1304Trp	p.R1304W	ENST00000342788	NM_005235.2	1304	Cgg/Tgg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112455	115112455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	102	779	0	ENST00000257566.3:c.1285G>A	p.Asp429Asn	p.D429N	ENST00000257566	NM_016569.3	429	Gac/Aac																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190850	185190851	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0044137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	203	791	1	ENST00000265026.3:c.1731_1732del	p.Ser578Ter	p.S578*	ENST00000265026	NM_004721.4	577	acTTct/acct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974739	21974753	+	inframe_deletion	In_Frame_Del	DEL	CCCGCACCTCCTCTA	CCCGCACCTCCTCTA	-			P-0044137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	86	398	0	ENST00000304494.5:c.74_88del	p.Val25_Arg29del	p.V25_R29del	ENST00000304494	NM_000077.4	25	gTAGAGGAGGTGCGGGcg/gcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974739	21974753	+	inframe_deletion	In_Frame_Del	DEL	CCCGCACCTCCTCTA	CCCGCACCTCCTCTA	-			P-0044137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	86	398	0	ENST00000304494.5:c.74_88del	p.Val25_Arg29del	p.V25_R29del	ENST00000304494	NM_000077.4	25	gTAGAGGAGGTGCGGGcg/gcg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932833	36932833	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs756056579		P-0044146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	203	740	1	ENST00000361632.4:c.2038G>A	p.Glu680Lys	p.E680K	ENST00000361632		680	Gag/Aag																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937115	36937115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	304	735	0	ENST00000361632.4:c.1204G>A	p.Glu402Lys	p.E402K	ENST00000361632		402	Gaa/Aaa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864514	57864514	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	273	782	0	ENST00000228682.2:c.1991A>T	p.His664Leu	p.H664L	ENST00000228682	NM_005269.2	664	cAt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587782082		P-0044146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	266	571	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750764	39750764	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	249	644	0	ENST00000361337.2:c.2164A>C	p.Asn722His	p.N722H	ENST00000361337	NM_003286.2	722	Aat/Cat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	476	815	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713546	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	141	547	0	ENST00000359013.4:c.946_948del	p.Lys316del	p.K316del	ENST00000359013	NM_001024847.2	315	gAGAag/gag																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4101030	4101030	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs730880511		P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	355	696	0	ENST00000262948.5:c.692G>T	p.Arg231Leu	p.R231L	ENST00000262948	NM_030662.3	231	cGc/cTc																																																																														
MITF	4286	MSKCC	GRCh37	3	69987147	69987147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760770591		P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	143	524	1	ENST00000352241.4:c.529G>A	p.Ala177Thr	p.A177T	ENST00000352241	NM_198159.2	177	Gca/Aca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266054	41266649	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	CAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGC	CAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGC	-			P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	78	336	0	ENST00000349496.5:c.53_448del		p.X18_splice	ENST00000349496	NM_001904.3	18	gaCAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCc/gac																																																																														
ATRX	546	MSKCC	GRCh37	X	76937850	76937850	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs138256318		P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	112	333	0	ENST00000373344.5:c.2898G>T	p.Glu966Asp	p.E966D	ENST00000373344	NM_000489.3	966	gaG/gaT																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981563	201981565	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TGG	TGG	-	rs995289305		P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	268	1023	2	ENST00000359651.3:c.478+1_478+3del		p.X160_splice	ENST00000359651		160																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981243	201981245	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	306	999	0	ENST00000359651.3:c.325_327del	p.Glu109del	p.E109del	ENST00000359651		108	GAG/-																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446440	49446441	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	196	725	1	ENST00000301067.7:c.1164_1165del	p.Tyr389ArgfsTer26	p.Y389Rfs*26	ENST00000301067	NM_003482.3	388	ctGTac/ctac																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001946	29001946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	99	433	0	ENST00000282397.4:c.1219C>A	p.Leu407Met	p.L407M	ENST00000282397	NM_002019.4	407	Ctg/Atg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663412	67663415	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-			P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	68	353	0	ENST00000264010.4:c.1818_1821del	p.Glu607IlefsTer23	p.E607Ifs*23	ENST00000264010	NM_006565.3	605	AAGAaa/aa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117719	70117720	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	569	1009	0	ENST00000245479.2:c.190_191del	p.Ser64ArgfsTer187	p.S64Rfs*187	ENST00000245479	NM_000346.3	63	GAg/g																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117564	4117566	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	83	651	0	ENST00000262948.5:c.154_156del	p.Lys52del	p.K52del	ENST00000262948	NM_030662.3	52	AAG/-																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144001	11144003	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	173	671	0	ENST00000344626.4:c.3586_3588del	p.Gln1196del	p.Q1196del	ENST00000344626	NM_003072.3	1194	ggGCAg/ggg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295182	1295183	+	upstream_gene_variant	5'Flank	INS	-	-	GGGCGGGGCCGCGGAAAGGAAG			P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	41	295	0				ENST00000310581	NM_198253.2																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106508527	106508527	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	100	377	0	ENST00000359195.3:c.521A>T	p.Glu174Val	p.E174V	ENST00000359195	NM_002649.2	174	gAg/gTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391370	139391371	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0044188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	278	1004	0	ENST00000277541.6:c.6820_6821del	p.Ser2274ProfsTer79	p.S2274Pfs*79	ENST00000277541	NM_017617.3	2274	TCc/c																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	188	345	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0044211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	44	335	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397516792		P-0044211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	303	613	0	ENST00000307102.5:c.371C>T	p.Pro124Leu	p.P124L	ENST00000307102	NM_002755.3	124	cCg/cTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858184	9858184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	237	506	0	ENST00000330684.3:c.3217G>A	p.Glu1073Lys	p.E1073K	ENST00000330684	NM_001134407.1	1073	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0044211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	219	343	1				ENST00000310581	NM_198253.2																																																																																
NCOA3	8202	MSKCC	GRCh37	20	46262827	46262827	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	220	451	1	ENST00000371998.3:c.1000C>T	p.Arg334Ter	p.R334*	ENST00000371998		334	Cga/Tga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89337254	89337255	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0044211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	339	600	0	ENST00000301030.4:c.7776_7777delinsAA	p.Asp2593Asn	p.D2593N	ENST00000301030	NM_001256183.1	2592	caGGac/caAAac																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2202766	2202766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	391	551	0	ENST00000398665.3:c.775A>T	p.Asn259Tyr	p.N259Y	ENST00000398665	NM_032482.2	259	Aac/Tac																																																																														
LATS2	26524	MSKCC	GRCh37	13	21553836	21553836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	140	540	0	ENST00000382592.4:c.2766G>C	p.Gln922His	p.Q922H	ENST00000382592	NM_014572.2	922	caG/caC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0044257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	45	384	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678727	52678727	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	46	425	1	ENST00000394830.3:c.892C>T	p.Arg298Ter	p.R298*	ENST00000394830	NM_018313.4	298	Cga/Tga																																																																														
VHL	7428	MSKCC	GRCh37	3	10183771	10183771	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	107	638	0	ENST00000256474.2:c.240T>A	p.Ser80Arg	p.S80R	ENST00000256474	NM_000551.3	80	agT/agA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433514	49433514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	147	834	0	ENST00000301067.7:c.8039A>G	p.Gln2680Arg	p.Q2680R	ENST00000301067	NM_003482.3	2680	cAa/cGa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493513	56493513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376939275		P-0044257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	60	457	0	ENST00000267101.3:c.2921G>A	p.Arg974Gln	p.R974Q	ENST00000267101	NM_001982.3	974	cGg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11118639	11118639	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	133	710	0	ENST00000344626.4:c.2063A>C	p.Lys688Thr	p.K688T	ENST00000344626	NM_003072.3	688	aAg/aCg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721149	61721149	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	63	528	0	ENST00000401558.2:c.1125T>A	p.His375Gln	p.H375Q	ENST00000401558	NM_003400.3	375	caT/caA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163640	47163640	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	29	333	0	ENST00000409792.3:c.2486del	p.Leu829TrpfsTer13	p.L829Wfs*13	ENST00000409792	NM_014159.6	829	tTg/tg																																																																														
KDR	3791	MSKCC	GRCh37	4	55956167	55956167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	89	494	0	ENST00000263923.4:c.3148G>C	p.Ala1050Pro	p.A1050P	ENST00000263923	NM_002253.2	1050	Gcc/Ccc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271202	153271202	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	29	250	0	ENST00000281708.4:c.576del	p.Glu192AspfsTer47	p.E192Dfs*47	ENST00000281708	NM_033632.3	192	gaA/ga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223867	53223868	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0044257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	182	470	0	ENST00000375401.3:c.3491_3492del	p.Leu1164ProfsTer39	p.L1164Pfs*39	ENST00000375401	NM_004187.3	1164	cTG/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0044259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	82	632	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	58	376	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0044259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	63	372	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42054525	42054525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	54	355	0	ENST00000219905.7:c.7709C>T	p.Pro2570Leu	p.P2570L	ENST00000219905	NM_001164273.1	2570	cCt/cTt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782067	9782070	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0044291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	190	648	0	ENST00000377346.4:c.2090_2093del	p.Asp697AlafsTer4	p.D697Afs*4	ENST00000377346	NM_005026.3	697	gACTTc/gc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593616	+	protein_altering_variant	In_Frame_Del	DEL	AGTGGAAGGTTGTTGA	AGTGGAAGGTTGTTGA	C			P-0044291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	98	326	0	ENST00000288135.5:c.1667_1682delinsC	p.Gln556_Glu561delinsPro	p.Q556_E561delinsP	ENST00000288135	NM_000222.2	556	cAGTGGAAGGTTGTTGAg/cCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	148	403	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030314	180030314	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777755208		P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	374	692	1	ENST00000261937.6:c.3970C>T	p.Arg1324Trp	p.R1324W	ENST00000261937	NM_182925.4	1324	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	118	292	0	ENST00000257430.4:c.4127_4128del	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508557	106508557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	121	332	0	ENST00000359195.3:c.551G>A	p.Arg184His	p.R184H	ENST00000359195	NM_002649.2	184	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939512	71939512	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	206	795	0	ENST00000298229.2:c.367C>G	p.Pro123Ala	p.P123A	ENST00000298229	NM_001567.3	123	Ccg/Gcg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444238	49444238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	414	906	0	ENST00000301067.7:c.3133C>T	p.Pro1045Ser	p.P1045S	ENST00000301067	NM_003482.3	1045	Cct/Tct																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260163	19260163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	195	704	0	ENST00000162023.5:c.130G>A	p.Ala44Thr	p.A44T	ENST00000162023		44	Gcc/Acc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750520	41750520	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	220	513	0	ENST00000226382.2:c.108C>A	p.Cys36Ter	p.C36*	ENST00000226382	NM_003924.3	36	tgC/tgA																																																																														
TEK	7010	MSKCC	GRCh37	9	27206709	27206709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	168	518	0	ENST00000380036.4:c.2494G>A	p.Glu832Lys	p.E832K	ENST00000380036	NM_000459.3	832	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390984	139390984	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	644	835	0	ENST00000277541.6:c.7207C>T	p.Gln2403Ter	p.Q2403*	ENST00000277541	NM_017617.3	2403	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0044330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	101	453	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101401	27101402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	51	288	0	ENST00000324856.7:c.4689dup	p.Met1564HisfsTer8	p.M1564Hfs*8	ENST00000324856	NM_006015.4	1561	-/C																																																																														
TERT	7015	MSKCC	GRCh37	5	1293605	1293605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	138	557	1	ENST00000310581.5:c.1396C>T	p.Arg466Trp	p.R466W	ENST00000310581	NM_198253.2	466	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881620	37881620	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1196082930		P-0044330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	107	442	1	ENST00000269571.5:c.2690G>A	p.Arg897Gln	p.R897Q	ENST00000269571		897	cGg/cAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964504	93964504	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	28	276	0	ENST00000369303.4:c.2393T>A	p.Ile798Asn	p.I798N	ENST00000369303	NM_004440.3	798	aTt/aAt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547303	106547303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	55	311	0	ENST00000369096.4:c.540G>T	p.Met180Ile	p.M180I	ENST00000369096	NM_001198.3	180	atG/atT																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856013	111856013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	38	317	0	ENST00000341259.2:c.64G>A	p.Ala22Thr	p.A22T	ENST00000341259	NM_005475.2	22	Gcc/Acc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350203	15350203	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0044330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	107	506	4	ENST00000263377.2:c.3576G>T	p.Lys1192Asn	p.K1192N	ENST00000263377	NM_058243.2	1192	aaG/aaT																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266076	41266111	+	inframe_deletion	In_Frame_Del	DEL	TGGCAGCAACAGTCTTACCTGGACTCTGGAATCCAT	TGGCAGCAACAGTCTTACCTGGACTCTGGAATCCAT	-			P-0044330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	60	269	0	ENST00000349496.5:c.74_109del	p.Trp25_His36del	p.W25_H36del	ENST00000349496	NM_001904.3	25	TGGCAGCAACAGTCTTACCTGGACTCTGGAATCCAT/-																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	69	304	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	35	198	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	408	518	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	67	356	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	73	230	6	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	180	513	0	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	103	285	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	118	405	2	ENST00000378444.4:c.4862del	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	34	212	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	182	281	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	86	590	4	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	106	317	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161324	55161324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514550		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	87	321	0	ENST00000257290.5:c.3155C>T	p.Thr1052Met	p.T1052M	ENST00000257290	NM_006206.4	1052	aCg/aTg																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	72	403	4	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	85	295	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524468	187524469	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	127	446	0	ENST00000441802.2:c.11211_11212del	p.Cys3738ArgfsTer12	p.C3738Rfs*12	ENST00000441802	NM_005245.3	3737	ctCTgc/ctgc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228172	53228172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	187	444	0	ENST00000375401.3:c.2230C>T	p.Arg744Trp	p.R744W	ENST00000375401	NM_004187.3	744	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928065	178928065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	55	388	0	ENST00000263967.3:c.1343T>C	p.Val448Ala	p.V448A	ENST00000263967	NM_006218.2	448	gTa/gCa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	104	461	3	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
ATM	472	MSKCC	GRCh37	11	108106399	108106399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs146382972		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	18	98	0	ENST00000278616.4:c.334G>A	p.Ala112Thr	p.A112T	ENST00000278616	NM_000051.3	112	Gca/Aca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	29	437	1	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7982767	7982767	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	193	481	1	ENST00000319144.4:c.1018del	p.Leu340SerfsTer12	p.L340Sfs*12	ENST00000319144	NM_001139.2	340	Ctc/tc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18958623	18958623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	77	491	0	ENST00000262803.5:c.442C>T	p.Arg148Cys	p.R148C	ENST00000262803	NM_002911.3	148	Cgt/Tgt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035163	6035163	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs878854059		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	81	296	0	ENST00000265849.7:c.903+2T>C		p.X301_splice	ENST00000265849	NM_000535.5	301																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151884466	151884466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1435892915		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	60	286	0	ENST00000262189.6:c.4889C>T	p.Ser1630Leu	p.S1630L	ENST00000262189	NM_170606.2	1630	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435231	49435231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	186	485	0	ENST00000301067.7:c.6322C>T	p.Pro2108Ser	p.P2108S	ENST00000301067	NM_003482.3	2108	Ccg/Tcg																																																																														
IRF4	3662	MSKCC	GRCh37	6	393321	393321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	324	362	0	ENST00000380956.4:c.169G>A	p.Ala57Thr	p.A57T	ENST00000380956	NM_001195286.1	57	Gcg/Acg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948745	17948745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	201	539	0	ENST00000458235.1:c.1697T>C	p.Met566Thr	p.M566T	ENST00000458235	NM_000215.3	566	aTg/aCg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485747	57485747	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	110	306	0	ENST00000371085.3:c.1048A>G	p.Thr350Ala	p.T350A	ENST00000371085	NM_000516.4	350	Act/Gct																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346092	152346092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144079294		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	73	399	0	ENST00000359321.1:c.478G>A	p.Val160Ile	p.V160I	ENST00000359321	NM_005431.1	160	Gtc/Atc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987066	36987066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1325836054		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	182	443	0	ENST00000354822.5:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000354822	NM_001079668.2	208	cGa/cAa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910265	50910265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	200	491	0	ENST00000440232.2:c.1520G>A	p.Arg507His	p.R507H	ENST00000440232	NM_002691.3	507	cGc/cAc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910710	29910710	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199474419		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	196	666	0	ENST00000376809.5:c.250T>C	p.Trp84Arg	p.W84R	ENST00000376809	NM_002116.7	84	Tgg/Cgg																																																																														
AR	367	MSKCC	GRCh37	X	66765409	66765409	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs865948546		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	173	525	2	ENST00000374690.3:c.421G>A	p.Ala141Thr	p.A141T	ENST00000374690	NM_000044.3	141	Gcc/Acc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11276216	11276216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	60	342	0	ENST00000361445.4:c.3106A>G	p.Thr1036Ala	p.T1036A	ENST00000361445	NM_004958.3	1036	Acc/Gcc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259631	16259631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	140	415	0	ENST00000375759.3:c.6896A>G	p.Lys2299Arg	p.K2299R	ENST00000375759	NM_015001.2	2299	aAg/aGg																																																																														
CDC42	998	MSKCC	GRCh37	1	22413043	22413043	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	36	186	0	ENST00000344548.3:c.288+2T>C		p.X96_splice	ENST00000344548	NM_001039802.1	96																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115276463	115276463	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs908936569		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	48	415	0	ENST00000438362.2:c.865A>G	p.Thr289Ala	p.T289A	ENST00000438362	NM_001242891.1	289	Aca/Gca																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120471638	120471638	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	97	345	0	ENST00000256646.2:c.3853A>G	p.Thr1285Ala	p.T1285A	ENST00000256646	NM_024408.3	1285	Acc/Gcc																																																																														
RET	5979	MSKCC	GRCh37	10	43617442	43617442	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	83	360	0	ENST00000355710.3:c.2779A>G	p.Ile927Val	p.I927V	ENST00000355710	NM_020975.4	927	Atc/Gtc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63817033	63817033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	37	214	0	ENST00000279873.7:c.1004G>T	p.Arg335Met	p.R335M	ENST00000279873	NM_032199.2	335	aGg/aTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133219152	133219152	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775590365		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	200	535	0	ENST00000320574.5:c.4892G>A	p.Arg1631His	p.R1631H	ENST00000320574	NM_006231.2	1631	cGc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133237623	133237623	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	136	497	0	ENST00000320574.5:c.2992A>G	p.Thr998Ala	p.T998A	ENST00000320574	NM_006231.2	998	Acg/Gcg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438006	110438006	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs778487451		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	74	202	0	ENST00000375856.3:c.395A>G	p.Gln132Arg	p.Q132R	ENST00000375856	NM_003749.2	132	cAg/cGg																																																																														
BLM	641	MSKCC	GRCh37	15	91292700	91292700	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	69	373	1	ENST00000355112.3:c.202A>G	p.Thr68Ala	p.T68A	ENST00000355112	NM_000057.2	68	Acc/Gcc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396244	396244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	170	506	0	ENST00000262320.3:c.782C>T	p.Ala261Val	p.A261V	ENST00000262320	NM_003502.3	261	gCt/gTt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2115611	2115611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	169	523	0	ENST00000219476.3:c.1691T>C	p.Val564Ala	p.V564A	ENST00000219476	NM_000548.3	564	gTc/gCc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858274	9858274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	42	311	0	ENST00000330684.3:c.3127A>G	p.Thr1043Ala	p.T1043A	ENST00000330684	NM_001134407.1	1043	Acc/Gcc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983346	15983346	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	87	330	0	ENST00000268712.3:c.3433A>G	p.Thr1145Ala	p.T1145A	ENST00000268712	NM_006311.3	1145	Act/Gct																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688767	47688767	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1340081446		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	89	366	0	ENST00000347630.2:c.533T>C	p.Met178Thr	p.M178T	ENST00000347630	NM_001007230.1	178	aTg/aCg																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752465	55752465	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1382332810		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	268	587	0	ENST00000284073.2:c.923C>T	p.Ser308Leu	p.S308L	ENST00000284073	NM_138962.2	308	tCg/tTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591898	48591898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	69	377	0	ENST00000342988.3:c.1061T>C	p.Val354Ala	p.V354A	ENST00000342988	NM_005359.5	354	gTg/gCg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604717	48604717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	96	339	0	ENST00000342988.3:c.1541del	p.Pro514GlnfsTer23	p.P514Qfs*23	ENST00000342988	NM_005359.5	513	taC/ta																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212423	5212423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768007031		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	234	522	2	ENST00000357368.4:c.4694C>T	p.Thr1565Met	p.T1565M	ENST00000357368	NM_002850.3	1565	aCg/aTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244010	5244010	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	234	575	0	ENST00000357368.4:c.1472T>C	p.Leu491Pro	p.L491P	ENST00000357368	NM_002850.3	491	cTg/cCg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244091	5244091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	52	609	0	ENST00000357368.4:c.1391A>G	p.Tyr464Cys	p.Y464C	ENST00000357368	NM_002850.3	464	tAc/tGc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252754	10252754	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	155	489	0	ENST00000340748.4:c.3211T>C	p.Cys1071Arg	p.C1071R	ENST00000340748		1071	Tgc/Cgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170549	11170549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	199	518	0	ENST00000344626.4:c.4756T>C	p.Ser1586Pro	p.S1586P	ENST00000344626	NM_003072.3	1586	Tcc/Ccc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288814	15288814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	37	83	0	ENST00000263388.2:c.3925C>T	p.Arg1309Cys	p.R1309C	ENST00000263388	NM_000435.2	1309	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298023	15298023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745672629		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	231	594	0	ENST00000263388.2:c.1733G>A	p.Arg578His	p.R578H	ENST00000263388	NM_000435.2	578	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227851	36227851	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	192	590	0	ENST00000222270.7:c.7336C>T	p.Arg2446Ter	p.R2446*	ENST00000222270	NM_014727.1	2446	Cga/Tga																																																																														
AKT2	208	MSKCC	GRCh37	19	40741956	40741956	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	189	629	0	ENST00000392038.2:c.1016T>C	p.Val339Ala	p.V339A	ENST00000392038	NM_001626.4	339	gTc/gCc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905632	50905632	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	207	550	0	ENST00000440232.2:c.758+2T>C		p.X253_splice	ENST00000440232	NM_002691.3	253																																																																															
EPCAM	4072	MSKCC	GRCh37	2	47596682	47596682	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs776646187		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	112	207	0	ENST00000263735.4:c.38T>C	p.Leu13Pro	p.L13P	ENST00000263735	NM_002354.2	13	cTt/cCt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662187	227662187	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs141882284		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	215	624	0	ENST00000305123.5:c.1268G>T	p.Gly423Val	p.G423V	ENST00000305123	NM_005544.2	423	gGc/gTc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524438	44524438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	55	230	0	ENST00000291552.4:c.119C>T	p.Pro40Leu	p.P40L	ENST00000291552	NM_006758.2	40	cCg/cTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266904	41266904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	82	325	0	ENST00000349496.5:c.575C>A	p.Pro192His	p.P192H	ENST00000349496	NM_001904.3	192	cCt/cAt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670327	134670328	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	26	356	0	ENST00000398015.3:c.244dup	p.Ala82GlyfsTer20	p.A82Gfs*20	ENST00000398015	NM_004441.4	80	cgg/cGgg																																																																														
ATR	545	MSKCC	GRCh37	3	142231159	142231159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	116	377	0	ENST00000350721.4:c.4795C>G	p.Leu1599Val	p.L1599V	ENST00000350721	NM_001184.3	1599	Ctg/Gtg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198036	185198036	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1374039394		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	56	268	0	ENST00000265026.3:c.2518A>G	p.Ser840Gly	p.S840G	ENST00000265026	NM_004721.4	840	Agc/Ggc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467473	66467473	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	70	257	0	ENST00000273854.3:c.796T>A	p.Ser266Thr	p.S266T	ENST00000273854	NM_004439.5	266	Tct/Act																																																																														
TET2	54790	MSKCC	GRCh37	4	106157084	106157084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	91	378	0	ENST00000380013.4:c.1985T>A	p.Phe662Tyr	p.F662Y	ENST00000380013	NM_001127208.2	662	tTc/tAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332775	153332777	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	91	421	0	ENST00000281708.4:c.179_181del	p.Val60del	p.V60del	ENST00000281708	NM_033632.3	60	gTTGga/gga																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515123	31515123	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	44	466	0	ENST00000344624.3:c.1262A>G	p.Tyr421Cys	p.Y421C	ENST00000344624		421	tAc/tGc																																																																														
NPM1	4869	MSKCC	GRCh37	5	170818747	170818747	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	14	265	0	ENST00000296930.5:c.296T>C	p.Val99Ala	p.V99A	ENST00000296930	NM_002520.6	99	gTc/gCc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910783	29910783	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs281864743		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	75	430	0	ENST00000376809.5:c.323A>G	p.Tyr108Cys	p.Y108C	ENST00000376809	NM_002116.7	108	tAc/tGc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323958	31323959	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	109	367	0	ENST00000412585.2:c.604_605del	p.Lys202AlafsTer5	p.K202Afs*5	ENST00000412585	NM_005514.6	202	AAg/g																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004499	150004499	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	116	504	0	ENST00000253339.5:c.1726A>T	p.Ile576Phe	p.I576F	ENST00000253339		576	Atc/Ttc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152420051	152420051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	132	392	0	ENST00000206249.3:c.1738C>T	p.Gln580Ter	p.Q580*	ENST00000206249	NM_000125.3	580	Caa/Taa																																																																														
PARK2	0	MSKCC	GRCh37	6	162864373	162864373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	108	355	0	ENST00000366898.1:c.140G>T	p.Gly47Val	p.G47V	ENST00000366898	NM_004562.2	47	gGg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873371	151873371	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	75	252	0	ENST00000262189.6:c.9167A>G	p.Gln3056Arg	p.Q3056R	ENST00000262189	NM_170606.2	3056	cAg/cGg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209559	98209559	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs761753681		P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	148	480	0	ENST00000331920.6:c.3979A>G	p.Thr1327Ala	p.T1327A	ENST00000331920	NM_000264.3	1327	Act/Gct																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20150350	20150350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	81	285	0	ENST00000379607.5:c.287A>G	p.Asn96Ser	p.N96S	ENST00000379607	NM_001412.3	96	aAt/aGt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411314	63411314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	152	544	1	ENST00000330258.3:c.1853C>T	p.Ala618Val	p.A618V	ENST00000330258	NM_152424.3	618	gCt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	235	371	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0044395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	183	278	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168682	32168682	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs935064991		P-0044395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	332	670	0	ENST00000375023.3:c.4241C>T	p.Ala1414Val	p.A1414V	ENST00000375023	NM_004557.3	1414	gCg/gTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913409		P-0044395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	32	293	0	ENST00000349496.5:c.134C>A	p.Ser45Tyr	p.S45Y	ENST00000349496	NM_001904.3	45	tCt/tAt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523088	25523088	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758534627		P-0044395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	111	514	0	ENST00000264709.3:c.97C>T	p.Arg33Cys	p.R33C	ENST00000264709	NM_175629.2	33	Cgt/Tgt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89828391	89828391	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1185836546		P-0044395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	196	396	0	ENST00000389301.3:c.2818C>G	p.Gln940Glu	p.Q940E	ENST00000389301	NM_000135.2	940	Caa/Gaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435759	56435759	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	242	443	0	ENST00000407977.2:c.1378G>C	p.Asp460His	p.D460H	ENST00000407977		460	Gat/Cat																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110556	4110556	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs727504370		P-0044395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	303	549	0	ENST00000262948.5:c.401A>G	p.Tyr134Cys	p.Y134C	ENST00000262948	NM_030662.3	134	tAc/tGc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651426	52651426	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	168	395	0	ENST00000394830.3:c.1670A>T	p.Asp557Val	p.D557V	ENST00000394830	NM_018313.4	557	gAt/gTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140481457	140481457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	267	383	0	ENST00000288602.6:c.1351G>C	p.Glu451Gln	p.E451Q	ENST00000288602	NM_004333.4	451	Gag/Cag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	24	383	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073643	8073643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	38	473	1	ENST00000377482.5:c.1016del	p.Pro339ArgfsTer113	p.P339Rfs*113	ENST00000377482	NM_018948.3	339	cCg/cg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	164	603	1	ENST00000344626.4:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000344626	NM_003072.3	1192	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	141	423	3	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442579	52442579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1312611941		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	172	376	1	ENST00000460680.1:c.166C>T	p.Arg56Cys	p.R56C	ENST00000460680	NM_004656.3	56	Cgc/Tgc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216560	2216560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777525091		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	378	840	0	ENST00000398665.3:c.2204C>T	p.Thr735Met	p.T735M	ENST00000398665	NM_032482.2	735	aCg/aTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220476	123220476	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	254	251	0	ENST00000218089.9:c.3133C>T	p.Arg1045Ter	p.R1045*	ENST00000218089	NM_001042749.1	1045	Cga/Tga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	193	466	2	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112154969	112154969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137854567		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	223	662	0	ENST00000257430.4:c.1240C>T	p.Arg414Cys	p.R414C	ENST00000257430	NM_000038.5	414	Cgc/Tgc																																																																														
TET2	54790	MSKCC	GRCh37	4	106164914	106164914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771761785		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	144	365	1	ENST00000380013.4:c.3782G>A	p.Arg1261His	p.R1261H	ENST00000380013	NM_001127208.2	1261	cGc/cAc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	127	576	4	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746002	162746002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1056323839		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	112	392	0	ENST00000367921.3:c.2125C>T	p.Arg709Ter	p.R709*	ENST00000367921	NM_006182.2	709	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142242904	142242904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	172	503	0	ENST00000350721.4:c.4083G>T	p.Leu1361Phe	p.L1361F	ENST00000350721	NM_001184.3	1361	ttG/ttT																																																																														
ATM	472	MSKCC	GRCh37	11	108200961	108200961	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782310		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	110	349	0	ENST00000278616.4:c.7328G>A	p.Arg2443Gln	p.R2443Q	ENST00000278616	NM_000051.3	2443	cGa/cAa																																																																														
STK40	83931	MSKCC	GRCh37	1	36820836	36820836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1452017656		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	139	560	0	ENST00000373129.3:c.541G>A	p.Val181Met	p.V181M	ENST00000373129	NM_032017.1	181	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112173495	112173495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147655929		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	105	314	0	ENST00000257430.4:c.2204C>T	p.Ala735Val	p.A735V	ENST00000257430	NM_000038.5	735	gCg/gTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285059	15285059	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs367543285		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	234	696	0	ENST00000263388.2:c.4556T>C	p.Leu1519Pro	p.L1519P	ENST00000263388	NM_000435.2	1519	cTg/cCg																																																																														
CASP8	841	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1272714323		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	185	610	1	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																																																														
FYN	2534	MSKCC	GRCh37	6	112041242	112041242	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	93	296	0	ENST00000368678.4:c.13C>T	p.Gln5Ter	p.Q5*	ENST00000368678		5	Caa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55233024	55233024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144943614		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	161	427	0	ENST00000275493.2:c.1774G>A	p.Val592Ile	p.V592I	ENST00000275493	NM_005228.3	592	Gtc/Atc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	162	747	11	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																														
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs864622251		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	141	394	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866710	37866710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1258412021		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	492	716	3	ENST00000269571.5:c.877G>A	p.Ala293Thr	p.A293T	ENST00000269571		293	Gcc/Acc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19258595	19258595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377026490		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	166	789	0	ENST00000162023.5:c.305C>T	p.Pro102Leu	p.P102L	ENST00000162023		102	cCg/cTg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30303560	30303560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	12	60	0	ENST00000322652.5:c.844G>A	p.Ala282Thr	p.A282T	ENST00000322652	NM_015355.2	282	Gcc/Acc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11019828	11019828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	222	588	0	ENST00000327064.4:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000327064	NM_199141.1	168	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420670	49420670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs797045659		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	384	663	0	ENST00000301067.7:c.15079C>T	p.Arg5027Ter	p.R5027*	ENST00000301067	NM_003482.3	5027	Cga/Tga																																																																														
MITF	4286	MSKCC	GRCh37	3	69928292	69928292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	151	383	1	ENST00000352241.4:c.112G>A	p.Ala38Thr	p.A38T	ENST00000352241	NM_198159.2	38	Gcc/Acc																																																																														
RET	5979	MSKCC	GRCh37	10	43622120	43622120	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	100	517	0	ENST00000355710.3:c.3142del	p.Leu1048SerfsTer61	p.L1048Sfs*61	ENST00000355710	NM_020975.4	1046	gCc/gc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416115	49416115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs267607239		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	170	448	0	ENST00000301067.7:c.16360C>T	p.Arg5454Ter	p.R5454*	ENST00000301067	NM_003482.3	5454	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281179	15281179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1172987380		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	298	845	2	ENST00000263388.2:c.5077C>T	p.Arg1693Trp	p.R1693W	ENST00000263388	NM_000435.2	1693	Cgg/Tgg																																																																														
TP63	8626	MSKCC	GRCh37	3	189455533	189455533	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144315591		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	283	385	0	ENST00000264731.3:c.67G>A	p.Val23Ile	p.V23I	ENST00000264731	NM_003722.4	23	Gta/Ata																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521177	187521177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778434346		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	177	548	0	ENST00000441802.2:c.11978C>T	p.Pro3993Leu	p.P3993L	ENST00000441802	NM_005245.3	3993	cCc/cTc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526271	31526271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	231	890	0	ENST00000344624.3:c.769G>A	p.Asp257Asn	p.D257N	ENST00000344624		257	Gac/Aac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873308	151873308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs549101307		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	90	292	1	ENST00000262189.6:c.9230G>A	p.Arg3077His	p.R3077H	ENST00000262189	NM_170606.2	3077	cGt/cAt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59871074	59871074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780227		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	57	264	0	ENST00000259008.2:c.1357G>A	p.Ala453Thr	p.A453T	ENST00000259008	NM_032043.2	453	Gct/Act																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	100	730	0	ENST00000373198.4:c.3659G>T	p.Arg1220Leu	p.R1220L	ENST00000373198	NM_133170.3	1220	cGg/cTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100143	30100143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs191202207		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	182	646	0	ENST00000331968.5:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000331968	NM_002742.2	493	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7168037	7168037	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866529817		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	119	588	1	ENST00000302850.5:c.1552C>T	p.Pro518Ser	p.P518S	ENST00000302850	NM_000208.2	518	Ccg/Tcg																																																																														
RB1	5925	MSKCC	GRCh37	13	48951138	48951138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771421892		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	76	340	0	ENST00000267163.4:c.1300G>A	p.Val434Met	p.V434M	ENST00000267163	NM_000321.2	434	Gtg/Atg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16248740	16248740	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	17	269	0	ENST00000375759.3:c.1750-2del		p.X584_splice	ENST00000375759	NM_015001.2	584																																																																															
SPEN	23013	MSKCC	GRCh37	1	16262663	16262663	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747459170		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	139	404	0	ENST00000375759.3:c.9928G>A	p.Asp3310Asn	p.D3310N	ENST00000375759	NM_015001.2	3310	Gac/Aac																																																																														
JAK1	3716	MSKCC	GRCh37	1	65311209	65311209	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117679986		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	110	404	0	ENST00000342505.4:c.2102C>T	p.Ala701Val	p.A701V	ENST00000342505	NM_002227.2	701	gCc/gTc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65312350	65312350	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	126	489	0	ENST00000342505.4:c.1969T>C	p.Cys657Arg	p.C657R	ENST00000342505	NM_002227.2	657	Tgt/Cgt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325882	65325882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1490560356		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	142	510	1	ENST00000342505.4:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000342505	NM_002227.2	414	Cgg/Tgg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846355	156846355	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775718859		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	497	687	2	ENST00000524377.1:c.1796G>A	p.Arg599His	p.R599H	ENST00000524377	NM_002529.3	599	cGc/cAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348808	118348808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1131691799		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	123	376	0	ENST00000534358.1:c.3461G>A	p.Arg1154Gln	p.R1154Q	ENST00000534358	NM_005933.3	1154	cGg/cAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719895	18719895	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	216	356	0	ENST00000266497.5:c.3792G>A	p.Trp1264Ter	p.W1264*	ENST00000266497		1264	tgG/tgA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918750	32918750	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	66	213	0	ENST00000380152.3:c.6897T>A	p.Asn2299Lys	p.N2299K	ENST00000380152		2299	aaT/aaA																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370284	40370284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	168	770	0	ENST00000293328.3:c.1054G>A	p.Val352Met	p.V352M	ENST00000293328	NM_012448.3	352	Gtg/Atg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274331	5274331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	114	615	0	ENST00000357368.4:c.116C>T	p.Pro39Leu	p.P39L	ENST00000357368	NM_002850.3	39	cCc/cTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250809	10250809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	183	746	3	ENST00000340748.4:c.3671C>T	p.Pro1224Leu	p.P1224L	ENST00000340748		1224	cCg/cTg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11027439	11027439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	459	739	3	ENST00000327064.4:c.1006C>T	p.Arg336Trp	p.R336W	ENST00000327064	NM_199141.1	336	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141528	11141528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	223	728	0	ENST00000344626.4:c.3505G>A	p.Asp1169Asn	p.D1169N	ENST00000344626	NM_003072.3	1169	Gac/Aac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302984	15302984	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs745367307		P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	252	852	1	ENST00000263388.2:c.466C>T	p.Arg156Ter	p.R156*	ENST00000263388	NM_000435.2	156	Cga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030692	48030693	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	106	346	0	ENST00000234420.5:c.3311_3312del	p.Phe1104TrpfsTer3	p.F1104Wfs*3	ENST00000234420	NM_000179.2	1102	acTTtt/actt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436874	52436874	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	336	582	0	ENST00000460680.1:c.1904T>C	p.Leu635Pro	p.L635P	ENST00000460680	NM_004656.3	635	cTg/cCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539294	187539294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	96	400	0	ENST00000441802.2:c.8446G>A	p.Ala2816Thr	p.A2816T	ENST00000441802	NM_005245.3	2816	Gca/Aca																																																																														
IRF4	3662	MSKCC	GRCh37	6	407587	407587	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	80	268	0	ENST00000380956.4:c.1345A>G	p.Ile449Val	p.I449V	ENST00000380956	NM_001195286.1	449	Att/Gtt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151841838	151841838	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	100	309	0	ENST00000262189.6:c.14303A>G	p.Glu4768Gly	p.E4768G	ENST00000262189	NM_170606.2	4768	gAa/gGa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942801	44942829	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCATGAACACAGTTCAACTATACATGA	GGGCATGAACACAGTTCAACTATACATGA	-			P-0044415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	185	294	0	ENST00000377967.4:c.3381_3409del	p.Gly1128SerfsTer13	p.G1128Sfs*13	ENST00000377967	NM_021140.2	1127	ttGGGCATGAACACAGTTCAACTATACATGAaa/ttaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	39	255	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	43	516	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	67	507	1	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	42	241	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	13	259	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	26	280	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	21	266	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112173912	112173912	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	18	276	0	ENST00000257430.4:c.2621C>A	p.Ser874Ter	p.S874*	ENST00000257430	NM_000038.5	874	tCa/tAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938397	76938397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	10	582	0	ENST00000373344.5:c.2351C>T	p.Ser784Phe	p.S784F	ENST00000373344	NM_000489.3	784	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578531	7578531	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	519	1077	0	ENST00000269305.4:c.399del	p.Met133IlefsTer37	p.M133Ifs*37	ENST00000269305	NM_001126112.2	133	atG/at																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985492	2985492	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	250	539	0	ENST00000396946.4:c.319A>C	p.Thr107Pro	p.T107P	ENST00000396946	NM_032415.4	107	Act/Cct																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871868	12871869	+	frameshift_variant	Frame_Shift_Ins	INS	AC	AC	CTTT			P-0044482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	153	291	0	ENST00000228872.4:c.585_586delinsCTTT	p.Arg195SerfsTer31	p.R195Sfs*31	ENST00000228872	NM_004064.3	195	agACgt/agCTTTgt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682461	37682461	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs186741659		P-0044494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	4574	356	0	ENST00000447079.4:c.3652A>G	p.Met1218Val	p.M1218V	ENST00000447079	NM_015083.1	1218	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577607	7577608	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0044494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	268	585	0	ENST00000269305.4:c.673_674del	p.Val225TrpfsTer3	p.V225Wfs*3	ENST00000269305	NM_001126112.2	225	GTt/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	59	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0044538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	179	620	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	54	597	0	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604706	48604706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	25	392	0	ENST00000342988.3:c.1528G>A	p.Gly510Arg	p.G510R	ENST00000342988	NM_005359.5	510	Gga/Aga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886926322		P-0044538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	63	407	0	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6029571	6029571	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200513014		P-0044538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	88	342	0	ENST00000265849.7:c.1004A>G	p.Asn335Ser	p.N335S	ENST00000265849	NM_000535.5	335	aAt/aGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438192	49438192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	131	633	0	ENST00000301067.7:c.5077C>T	p.Arg1693Trp	p.R1693W	ENST00000301067	NM_003482.3	1693	Cgg/Tgg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058542	72058542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	102	403	1	ENST00000357731.5:c.898G>A	p.Ala300Thr	p.A300T	ENST00000357731	NM_173808.2	300	Gcc/Acc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458173	120458173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	85	618	0	ENST00000256646.2:c.7172G>A	p.Ser2391Asn	p.S2391N	ENST00000256646	NM_024408.3	2391	aGt/aAt																																																																														
ATM	472	MSKCC	GRCh37	11	108098540	108098540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	28	156	0	ENST00000278616.4:c.110C>A	p.Pro37His	p.P37H	ENST00000278616	NM_000051.3	37	cCt/cAt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967620	26967620	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	68	294	0	ENST00000381527.3:c.763A>G	p.Ile255Val	p.I255V	ENST00000381527	NM_001260.1	255	Ata/Gta																																																																														
PARK2	0	MSKCC	GRCh37	6	162475176	162475176	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761430731		P-0044538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	84	373	0	ENST00000366898.1:c.565C>T	p.Pro189Ser	p.P189S	ENST00000366898	NM_004562.2	189	Cca/Tca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2972184	2972184	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	59	559	1	ENST00000396946.4:c.1555A>T	p.Thr519Ser	p.T519S	ENST00000396946	NM_032415.4	519	Aca/Tca																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806089	1806089	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913479		P-0044552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	798	656	1	ENST00000260795.2:c.1108G>T	p.Gly370Cys	p.G370C	ENST00000260795		370	Ggc/Tgc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026871	71026871	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	145	240	0	ENST00000318789.4:c.1351G>A	p.Asp451Asn	p.D451N	ENST00000318789	NM_032682.5	451	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108119720	108119720	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	130	256	0	ENST00000278616.4:c.1126G>T	p.Glu376Ter	p.E376*	ENST00000278616	NM_000051.3	376	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76764023	76764023	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	661	312	0	ENST00000373344.5:c.7285C>T	p.Gln2429Ter	p.Q2429*	ENST00000373344	NM_000489.3	2429	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099434	27099492	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTCCTATGAGCCAAATAAGGATCCTTATGGCAGCATGAGGAAAGGTGACTGATCTGAT	TGTCCTATGAGCCAAATAAGGATCCTTATGGCAGCATGAGGAAAGGTGACTGATCTGAT	-			P-0044552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	48	483	0	ENST00000324856.7:c.3673_3715+16del		p.X1225_splice	ENST00000324856	NM_006015.4	1225																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145758	11145758	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1447890611		P-0044552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	440	673	0	ENST00000344626.4:c.4120C>T	p.Arg1374Cys	p.R1374C	ENST00000344626	NM_003072.3	1374	Cgc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623131	52623131	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	350	441	0	ENST00000394830.3:c.2920C>T	p.Gln974Ter	p.Q974*	ENST00000394830	NM_018313.4	974	Caa/Taa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20490491	20490491	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1474	459	495	2	ENST00000346618.3:c.1228A>T	p.Thr410Ser	p.T410S	ENST00000346618	NM_001949.4	410	Act/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	102	171	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0044554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	170	373	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0044554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	117	341	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	99	214	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0044554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	179	530	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591891	48591891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912581		P-0044554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	256	327	2	ENST00000342988.3:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000342988	NM_005359.5	352	Gga/Aga																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733044	74733044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	207	354	1	ENST00000359995.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000359995	NM_001195427.1	67	Gac/Aac																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115277125	115277125	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770606954		P-0044554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	97	277	0	ENST00000438362.2:c.658C>T	p.Arg220Cys	p.R220C	ENST00000438362	NM_001242891.1	220	Cgc/Tgc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162741925	162741925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	165	315	0	ENST00000367921.3:c.1616C>T	p.Ser539Leu	p.S539L	ENST00000367921	NM_006182.2	539	tCa/tTa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478795	56478795	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1425922004		P-0044554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	175	372	0	ENST00000267101.3:c.251C>G	p.Thr84Arg	p.T84R	ENST00000267101	NM_001982.3	84	aCa/aGa																																																																														
CIC	23152	MSKCC	GRCh37	19	42794460	42794460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	283	584	0	ENST00000575354.2:c.1540C>A	p.Pro514Thr	p.P514T	ENST00000575354	NM_015125.3	514	Ccc/Acc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715373	117715373	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	77	295	0	ENST00000368508.3:c.1116C>G	p.Ile372Met	p.I372M	ENST00000368508	NM_002944.2	372	atC/atG																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	173	275	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	304	383	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857679	9857679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886042648		P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	97	296	0	ENST00000330684.3:c.3722G>A	p.Arg1241Gln	p.R1241Q	ENST00000330684	NM_001134407.1	1241	cGg/cAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151893008	151893008	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	76	181	0	ENST00000262189.6:c.4362del	p.Lys1454AsnfsTer30	p.K1454Nfs*30	ENST00000262189	NM_170606.2	1454	aaA/aa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858150	9858150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	134	397	1	ENST00000330684.3:c.3251A>G	p.Asp1084Gly	p.D1084G	ENST00000330684	NM_001134407.1	1084	gAc/gGc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979533	7979533	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs144747081		P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	321	424	0	ENST00000319144.4:c.1492T>C	p.Tyr498His	p.Y498H	ENST00000319144	NM_001139.2	498	Tac/Cac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151893012	151893012	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	81	188	0	ENST00000262189.6:c.4358C>G	p.Ala1453Gly	p.A1453G	ENST00000262189	NM_170606.2	1453	gCa/gGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	106	549	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108164079	108164079	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	30	147	0	ENST00000278616.4:c.4651G>C	p.Asp1551His	p.D1551H	ENST00000278616	NM_000051.3	1551	Gat/Cat																																																																														
EZH1	2145	MSKCC	GRCh37	17	40856618	40856618	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0044568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	43	322	0	ENST00000428826.2:c.2017+2T>C		p.X673_splice	ENST00000428826		673																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222082	2222082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	117	625	1	ENST00000398665.3:c.2914G>A	p.Gly972Arg	p.G972R	ENST00000398665	NM_032482.2	972	Ggg/Agg																																																																														
APC	324	MSKCC	GRCh37	5	112175075	112175076	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0044568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	17	132	0	ENST00000257430.4:c.3785dup	p.Tyr1262Ter	p.Y1262*	ENST00000257430	NM_000038.5	1262	tat/tAat																																																																														
CDK6	1021	MSKCC	GRCh37	7	92300746	92300746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	36	228	0	ENST00000265734.4:c.641G>A	p.Arg214His	p.R214H	ENST00000265734	NM_001259.6	214	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	26	686	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	59	494	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821956	72821956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	21	322	0	ENST00000268489.5:c.10219del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3407	Gct/ct																																																																														
ATM	472	MSKCC	GRCh37	11	108225571	108225572	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0044601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	42	386	0	ENST00000278616.4:c.8823_8824del	p.Gln2942GlyfsTer13	p.Q2942Gfs*13	ENST00000278616	NM_000051.3	2940	aaCTct/aact																																																																														
MGA	23269	MSKCC	GRCh37	15	42035227	42035227	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	87	677	0	ENST00000219905.7:c.5070del	p.Ala1691LeufsTer8	p.A1691Lfs*8	ENST00000219905	NM_001164273.1	1690	gTt/gt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176330	24176330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1057517825		P-0044643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	44	617	1	ENST00000263121.7:c.1121G>A	p.Arg374Gln	p.R374Q	ENST00000263121	NM_003073.3	374	cGg/cAg																																																																														
ATM	472	MSKCC	GRCh37	11	108224504	108224504	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs769951912		P-0044643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	17	208	0	ENST00000278616.4:c.8683G>T	p.Glu2895Ter	p.E2895*	ENST00000278616	NM_000051.3	2895	Gaa/Taa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11182104	11182104	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181023452		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	129	694	0	ENST00000361445.4:c.6742G>A	p.Ala2248Thr	p.A2248T	ENST00000361445	NM_004958.3	2248	Gcc/Acc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11270918	11270918	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	102	476	0	ENST00000361445.4:c.3607C>T	p.Arg1203Ter	p.R1203*	ENST00000361445	NM_004958.3	1203	Cga/Tga																																																																														
CDC42	998	MSKCC	GRCh37	1	22412996	22412996	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	39	160	0	ENST00000344548.3:c.247del	p.Ser83GlnfsTer11	p.S83Qfs*11	ENST00000344548	NM_001039802.1	81	tgT/tg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28607287	28607287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778863205		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	127	575	0	ENST00000253063.3:c.1417C>T	p.Arg473Cys	p.R473C	ENST00000253063	NM_031459.4	473	Cgt/Tgt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36938213	36938213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	130	877	0	ENST00000361632.4:c.748C>T	p.Gln250Ter	p.Q250*	ENST00000361632		250	Cag/Tag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78426155	78426155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	56	363	0	ENST00000370768.2:c.1370C>A	p.Pro457His	p.P457H	ENST00000370768	NM_003902.3	457	cCt/cAt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838326	156838326	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	143	943	0	ENST00000524377.1:c.604A>G	p.Asn202Asp	p.N202D	ENST00000524377	NM_002529.3	202	Aat/Gat																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843449	156843449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764645590		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	104	666	0	ENST00000524377.1:c.875C>T	p.Thr292Met	p.T292M	ENST00000524377	NM_002529.3	292	aCg/aTg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176085808	176085810	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	70	386	0	ENST00000367669.3:c.976_978del	p.Ile326del	p.I326del	ENST00000367669	NM_022457.5	326	ATT/-																																																																														
CDC73	79577	MSKCC	GRCh37	1	193218980	193218980	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465509067		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	51	276	0	ENST00000367435.3:c.1538G>A	p.Arg513Gln	p.R513Q	ENST00000367435	NM_024529.4	513	cGg/cAg																																																																														
FH	2271	MSKCC	GRCh37	1	241680543	241680543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	70	458	0	ENST00000366560.3:c.206G>A	p.Gly69Asp	p.G69D	ENST00000366560	NM_000143.3	69	gGc/gAc																																																																														
RET	5979	MSKCC	GRCh37	10	43601893	43601893	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057521089		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	138	778	1	ENST00000355710.3:c.937C>T	p.Arg313Trp	p.R313W	ENST00000355710	NM_020975.4	313	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692884	89692884	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909222		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	69	373	0	ENST00000371953.3:c.368A>G	p.His123Arg	p.H123R	ENST00000371953	NM_000314.4	123	cAc/cGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913293		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	69	433	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104309777	104309777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745958724		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	139	633	1	ENST00000369902.3:c.368G>A	p.Arg123His	p.R123H	ENST00000369902	NM_016169.3	123	cGt/cAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	185	485	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247593	123247593	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	75	485	2	ENST00000358487.5:c.1898del	p.Leu633TrpfsTer2	p.L633Wfs*2	ENST00000358487	NM_000141.4	633	tTg/tg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129325	64129325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs376604355		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	97	746	1	ENST00000334205.4:c.757C>T	p.Arg253Trp	p.R253W	ENST00000334205	NM_003942.2	253	Cgg/Tgg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	52	429	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588869	69588869	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766381502		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	91	756	1	ENST00000168712.1:c.367C>T	p.Arg123Trp	p.R123W	ENST00000168712	NM_002007.2	123	Cgg/Tgg																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125514026	125514026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775909758		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	83	500	1	ENST00000428830.2:c.964C>T	p.Arg322Cys	p.R322C	ENST00000428830	NM_001114121.2	322	Cgc/Tgc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	459885	459885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	124	755	0	ENST00000399788.2:c.1210G>A	p.Asp404Asn	p.D404N	ENST00000399788	NM_001042603.1	404	Gat/Aat																																																																														
RECQL	5965	MSKCC	GRCh37	12	21626494	21626494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	72	484	0	ENST00000421138.2:c.1438A>G	p.Lys480Glu	p.K480E	ENST00000421138		480	Aaa/Gaa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628716	21628716	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755679996		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	68	417	0	ENST00000421138.2:c.992C>T	p.Thr331Met	p.T331M	ENST00000421138		331	aCg/aTg																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944842	31944842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	145	819	0	ENST00000340398.3:c.259G>A	p.Ala87Thr	p.A87T	ENST00000340398	NM_001013699.2	87	Gca/Aca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245470	46245470	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	61	376	0	ENST00000334344.6:c.3564T>G	p.Ser1188Arg	p.S1188R	ENST00000334344	NM_152641.2	1188	agT/agG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434959	49434959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	91	698	0	ENST00000301067.7:c.6594del	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2198	ccC/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445203	49445203	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	125	961	4	ENST00000301067.7:c.2263del	p.Arg755GlyfsTer175	p.R755Gfs*175	ENST00000301067	NM_003482.3	755	Cgg/gg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432040	121432040	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771108132		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	155	947	3	ENST00000257555.6:c.787C>T	p.Arg263Cys	p.R263C	ENST00000257555		263	Cgt/Tgt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	114	769	3	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712700	43712700	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1282655302		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	161	893	0	ENST00000382044.4:c.4484G>A	p.Arg1495His	p.R1495H	ENST00000382044	NM_001141980.1	1495	cGt/cAt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423579	88423579	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	89	657	0	ENST00000360948.2:c.2256T>G	p.Asp752Glu	p.D752E	ENST00000360948	NM_001012338.2	752	gaT/gaG																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	166	828	2	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434635	99434635	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148823172		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	140	681	0	ENST00000268035.6:c.722C>T	p.Ala241Val	p.A241V	ENST00000268035	NM_000875.3	241	gCg/gTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465555	99465555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753047347		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	94	580	1	ENST00000268035.6:c.2380C>T	p.Arg794Trp	p.R794W	ENST00000268035	NM_000875.3	794	Cgg/Tgg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121909	2121909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760489473		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	154	931	2	ENST00000219476.3:c.2071C>T	p.Arg691Cys	p.R691C	ENST00000219476	NM_000548.3	691	Cgc/Tgc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222371	2222371	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1419349453		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	100	849	0	ENST00000326181.6:c.655C>T	p.Arg219Trp	p.R219W	ENST00000326181	NM_032271.2	219	Cgg/Tgg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779560	3779560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	134	1090	0	ENST00000262367.5:c.5488G>A	p.Ala1830Thr	p.A1830T	ENST00000262367	NM_004380.2	1830	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832927	3832927	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	20	372	0	ENST00000262367.5:c.1331C>T	p.Thr444Ile	p.T444I	ENST00000262367	NM_004380.2	444	aCc/aTc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50811827	50811827	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	69	422	0	ENST00000398568.2:c.1109del	p.Asn370IlefsTer35	p.N370Ifs*35	ENST00000398568	NM_001042412.1	368	tcA/tc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56875638	56875638	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1239777742		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	27	463	0	ENST00000308159.5:c.2242G>A	p.Val748Met	p.V748M	ENST00000308159	NM_014669.4	748	Gtg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821906	72821908	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs767338198		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	66	390	0	ENST00000268489.5:c.10267_10269del	p.Glu3423del	p.E3423del	ENST00000268489	NM_006885.3	3423	GAA/-																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829368	72829368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201280219		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	111	704	0	ENST00000268489.5:c.7213G>A	p.Ala2405Thr	p.A2405T	ENST00000268489	NM_006885.3	2405	Gct/Act																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944126	81944126	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1324356186		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	80	540	0	ENST00000359376.3:c.1735C>T	p.Arg579Trp	p.R579W	ENST00000359376	NM_002661.3	579	Cgg/Tgg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15960943	15960943	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575750270		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	71	382	0	ENST00000268712.3:c.6277G>A	p.Val2093Met	p.V2093M	ENST00000268712	NM_006311.3	2093	Gtg/Atg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	132	845	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462635	40462635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762056710		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	134	627	2	ENST00000345506.4:c.2333G>A	p.Arg778His	p.R778H	ENST00000345506	NM_003152.3	778	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	255	811	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	170	683	2	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439936	56439936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377765604		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	178	757	0	ENST00000407977.2:c.656G>A	p.Arg219His	p.R219H	ENST00000407977		219	cGc/cAc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	93	593	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	173	501	1	ENST00000307078.5:c.1249del	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs771001164		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	61	435	1	ENST00000307078.5:c.1214_1215del	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626843	14626843	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377564300		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	130	782	0	ENST00000254322.2:c.932G>A	p.Arg311His	p.R311H	ENST00000254322	NM_006145.1	311	cGt/cAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295797	15295797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1166093165		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	190	930	0	ENST00000263388.2:c.2330C>T	p.Pro777Leu	p.P777L	ENST00000263388	NM_000435.2	777	cCg/cTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302604	15302604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115836330		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	143	899	1	ENST00000263388.2:c.754G>A	p.Val252Met	p.V252M	ENST00000263388	NM_000435.2	252	Gtg/Atg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350333	15350333	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	26	595	0	ENST00000263377.2:c.3446G>T	p.Arg1149Leu	p.R1149L	ENST00000263377	NM_058243.2	1149	cGg/cTg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17384941	17384941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	177	884	0	ENST00000359435.4:c.491G>A	p.Arg164His	p.R164H	ENST00000359435	NM_001033549.1	164	cGc/cAc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17951140	17951140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	116	662	0	ENST00000458235.1:c.1153G>A	p.Ala385Thr	p.A385T	ENST00000458235	NM_000215.3	385	Gcc/Acc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968288	18968288	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776533487		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	129	897	0	ENST00000262803.5:c.2128G>A	p.Ala710Thr	p.A710T	ENST00000262803	NM_002911.3	710	Gcc/Acc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30314561	30314561	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	121	578	0	ENST00000262643.3:c.1111-1G>A		p.X371_splice	ENST00000262643	NM_001238.2	371																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228998	36228998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	157	800	1	ENST00000222270.7:c.7778G>A	p.Arg2593His	p.R2593H	ENST00000222270	NM_014727.1	2593	cGc/cAc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383182	42383182	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782657641		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	145	766	4	ENST00000221972.3:c.202C>T	p.Arg68Cys	p.R68C	ENST00000221972	NM_021601.3	68	Cgc/Tgc																																																																														
CENPA	1058	MSKCC	GRCh37	2	27009132	27009132	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319855787		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	30	137	0	ENST00000335756.4:c.72del	p.Gly25AlafsTer9	p.G25Afs*9	ENST00000335756	NM_001809.3	23	aCc/ac																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213243	39213243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	172	881	6	ENST00000402219.2:c.3724del	p.Ser1242ValfsTer37	p.S1242Vfs*37	ENST00000402219	NM_005633.3	1242	Agt/gt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630498	47630498	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	123	772	0	ENST00000233146.2:c.169del	p.Val57CysfsTer7	p.V57Cfs*7	ENST00000233146	NM_000251.2	56	gaG/ga																																																																														
ACVR1	90	MSKCC	GRCh37	2	158594104	158594104	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs554387941		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	75	382	0	ENST00000263640.3:c.1469G>A	p.Arg490His	p.R490H	ENST00000263640	NM_001105.4	490	cGt/cAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483981	212483981	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	24	429	0	ENST00000342788.4:c.2222del	p.Gly741GlufsTer4	p.G741Efs*4	ENST00000342788	NM_005235.2	741	gGa/ga																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375133	31375133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	117	862	0	ENST00000328111.2:c.530C>T	p.Thr177Ile	p.T177I	ENST00000328111	NM_006892.3	177	aCa/aTa																																																																														
SRC	6714	MSKCC	GRCh37	20	36031202	36031202	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202242810		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	144	755	0	ENST00000358208.4:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000358208		441	Cgc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980756	40980756	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	98	512	1	ENST00000373198.4:c.1730del	p.Pro577LeufsTer24	p.P577Lfs*24	ENST00000373198	NM_133170.3	577	cCt/ct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306584	41306584	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	100	747	1	ENST00000373198.4:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000373198	NM_133170.3	359	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713246	30713246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56105708		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	42	382	0	ENST00000359013.4:c.646G>A	p.Val216Ile	p.V216I	ENST00000359013	NM_001024847.2	216	Gtt/Att																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125763	47125763	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144171734		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	77	337	0	ENST00000409792.3:c.5507C>T	p.Pro1836Leu	p.P1836L	ENST00000409792	NM_014159.6	1836	cCg/cTg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430546	181430546	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	93	589	0	ENST00000325404.1:c.402del	p.Gly135AlafsTer19	p.G135Afs*19	ENST00000325404	NM_003106.3	133	gCc/gc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1976716	1976717	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	70	687	0	ENST00000382895.3:c.3501_3502del	p.Cys1167Ter	p.C1167*	ENST00000382895	NM_133330.2	1167	TGt/t																																																																														
KDR	3791	MSKCC	GRCh37	4	55971073	55971073	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs754856383		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	63	499	0	ENST00000263923.4:c.1724G>T	p.Arg575Ile	p.R575I	ENST00000263923	NM_002253.2	575	aGa/aTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	111	483	0	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538244	187538244	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746286358		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	107	575	0	ENST00000441802.2:c.8990C>T	p.Thr2997Met	p.T2997M	ENST00000441802	NM_005245.3	2997	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627747	187627747	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143694311		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	89	412	0	ENST00000441802.2:c.3235G>A	p.Val1079Ile	p.V1079I	ENST00000441802	NM_005245.3	1079	Gtt/Att																																																																														
TERT	7015	MSKCC	GRCh37	5	1255456	1255456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374968697		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	129	712	0	ENST00000310581.5:c.3103G>A	p.Val1035Ile	p.V1035I	ENST00000310581	NM_198253.2	1035	Gtc/Atc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168713	56168713	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1483289809		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	83	386	0	ENST00000399503.3:c.1567G>A	p.Val523Ile	p.V523I	ENST00000399503	NM_005921.1	523	Gta/Ata																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	261	583	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86629102	86629102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	63	288	0	ENST00000274376.6:c.847C>T	p.Arg283Cys	p.R283C	ENST00000274376	NM_002890.2	283	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112178804	112178804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	69	370	1	ENST00000257430.4:c.7513C>T	p.Arg2505Ter	p.R2505*	ENST00000257430	NM_000038.5	2505	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112179789	112179789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587779810		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	42	298	0	ENST00000257430.4:c.8498G>A	p.Arg2833His	p.R2833H	ENST00000257430	NM_000038.5	2833	cGc/cAc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519731	176519731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1348650129		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	123	834	1	ENST00000292408.4:c.1003G>A	p.Ala335Thr	p.A335T	ENST00000292408	NM_213647.1	335	Gca/Aca																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638884	176638884	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765811504		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	129	662	0	ENST00000439151.2:c.3484C>T	p.Arg1162Cys	p.R1162C	ENST00000439151	NM_022455.4	1162	Cgt/Tgt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045918	180045920	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTC	CTC	-	rs746341092		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	48	475	0	ENST00000261937.6:c.2851_2853del	p.Glu951del	p.E951del	ENST00000261937	NM_182925.4	951	GAG/-																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047959	180047959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs933223149		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	131	880	1	ENST00000261937.6:c.2216G>A	p.Arg739His	p.R739H	ENST00000261937	NM_182925.4	739	cGc/cAc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798105	32798105	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	80	810	0	ENST00000374899.4:c.1574del	p.Gly525AspfsTer36	p.G525Dfs*36	ENST00000374899	NM_018833.2	525	gGa/ga																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	112	816	7	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32806009	32806009	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs1397817921		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	106	708	0	ENST00000374899.4:c.2T>C	p.Met1?	p.M1?	ENST00000374899	NM_018833.2	1	aTg/aCg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651936	36651936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748554042		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	135	708	1	ENST00000244741.5:c.58C>T	p.Arg20Cys	p.R20C	ENST00000244741	NM_000389.4	20	Cgc/Tgc																																																																														
FYN	2534	MSKCC	GRCh37	6	111983028	111983028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	144	731	0	ENST00000368678.4:c.1519C>T	p.Arg507Cys	p.R507C	ENST00000368678		507	Cgc/Tgc																																																																														
FYN	2534	MSKCC	GRCh37	6	112041169	112041169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766059845		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	103	549	0	ENST00000368678.4:c.86G>A	p.Arg29His	p.R29H	ENST00000368678		29	cGc/cAc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150022919	150022919	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	74	333	0	ENST00000253339.5:c.344A>G	p.Asp115Gly	p.D115G	ENST00000253339		115	gAt/gGt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962298	2962298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769577430		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	191	786	2	ENST00000396946.4:c.2239G>A	p.Val747Ile	p.V747I	ENST00000396946	NM_032415.4	747	Gtc/Atc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6027156	6027157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs758048239		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	14	13	0	ENST00000265849.7:c.1239dup	p.Asp414ArgfsTer44	p.D414Rfs*44	ENST00000265849	NM_000535.5	413	-/A																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431665	6431665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	142	774	0	ENST00000356142.4:c.218C>T	p.Pro73Leu	p.P73L	ENST00000356142	NM_018890.3	73	cCg/cTg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468251	50468251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs548117828		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	108	686	0	ENST00000331340.3:c.1486G>A	p.Gly496Ser	p.G496S	ENST00000331340	NM_006060.4	496	Ggc/Agc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221719	55221719	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs776490661		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	81	480	1	ENST00000275493.2:c.763C>T	p.Arg255Ter	p.R255*	ENST00000275493	NM_005228.3	255	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55272981	55272981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	113	600	0	ENST00000275493.2:c.3304G>A	p.Ala1102Thr	p.A1102T	ENST00000275493	NM_005228.3	1102	Gct/Act																																																																														
MET	4233	MSKCC	GRCh37	7	116409799	116409799	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199502137		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	51	293	0	ENST00000397752.3:c.2684C>T	p.Thr895Met	p.T895M	ENST00000397752	NM_000245.2	895	aCg/aTg																																																																														
RHEB	6009	MSKCC	GRCh37	7	151181886	151181886	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	72	286	0	ENST00000262187.5:c.129del	p.Phe43LeufsTer4	p.F43Lfs*4	ENST00000262187	NM_005614.3	43	ttT/tt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38283643	38283643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186746130		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	74	458	0	ENST00000425967.3:c.835G>A	p.Val279Met	p.V279M	ENST00000425967	NM_001174067.1	279	Gtg/Atg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521481	8521481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760428875		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	153	577	0	ENST00000356435.5:c.757G>A	p.Val253Ile	p.V253I	ENST00000356435		253	Gtt/Att																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570404	87570404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	130	776	0	ENST00000277120.3:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000277120		715	cGg/cAg																																																																														
SYK	6850	MSKCC	GRCh37	9	93624511	93624511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	25	410	0	ENST00000375746.1:c.602G>A	p.Gly201Asp	p.G201D	ENST00000375746	NM_001174167.1	201	gGc/gAc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314918	1314920	+	downstream_gene_variant	3'Flank	DEL	AGG	AGG	-			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	74	508	0				ENST00000381566																																																																																	
KDM6A	7403	MSKCC	GRCh37	X	44918695	44918695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746746824		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	80	397	1	ENST00000377967.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000377967	NM_021140.2	393	cGa/cAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44921908	44921908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778421870		P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	95	398	0	ENST00000377967.4:c.1442G>A	p.Arg481His	p.R481H	ENST00000377967	NM_021140.2	481	cGc/cAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	117	742	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70351422	70351422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	127	656	0	ENST00000374080.3:c.4070G>A	p.Arg1357His	p.R1357H	ENST00000374080		1357	cGc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937602	76937603	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	42	363	0	ENST00000373344.5:c.3145dup	p.Ile1049AsnfsTer4	p.I1049Nfs*4	ENST00000373344	NM_000489.3	1049	ata/aAta																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191783	123191783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	72	432	0	ENST00000218089.9:c.1372G>A	p.Ala458Thr	p.A458T	ENST00000218089	NM_001042749.1	458	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	128	318	0				ENST00000310581	NM_198253.2																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81914540	81914540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770601419		P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	62	323	0	ENST00000359376.3:c.674C>T	p.Ser225Leu	p.S225L	ENST00000359376	NM_002661.3	225	tCg/tTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123202462	123202462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	113	370	0	ENST00000218089.9:c.2314T>C	p.Cys772Arg	p.C772R	ENST00000218089	NM_001042749.1	772	Tgt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs878854073		P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	202	441	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983019	201983019	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	248	756	0	ENST00000359651.3:c.868G>T	p.Glu290Ter	p.E290*	ENST00000359651		290	Gag/Tag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983094	201983094	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	130	721	0	ENST00000359651.3:c.943T>C	p.Trp315Arg	p.W315R	ENST00000359651		315	Tgg/Cgg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81914526	81914529	+	frameshift_variant	Frame_Shift_Del	DEL	ATTC	ATTC	-			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	61	331	1	ENST00000359376.3:c.661_664del	p.Phe221LysfsTer41	p.F221Kfs*41	ENST00000359376	NM_002661.3	220	gaATTC/ga																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59934575	59934576	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	28	238	0	ENST00000259008.2:c.222_223delinsCT	p.Glu74_Gly75delinsAspCys	p.E74_G75delinsDC	ENST00000259008	NM_032043.2	74	gaGGgc/gaCTgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229360	36229360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	125	525	0	ENST00000222270.7:c.8050G>T	p.Glu2684Ter	p.E2684*	ENST00000222270	NM_014727.1	2684	Gag/Tag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090684	71090684	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	100	181	0	ENST00000318789.4:c.665-1G>A		p.X222_splice	ENST00000318789	NM_032682.5	222																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153250837	153250837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	32	308	0	ENST00000281708.4:c.1223C>A	p.Ala408Glu	p.A408E	ENST00000281708	NM_033632.3	408	gCa/gAa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915008	131915009	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	20	295	0	ENST00000265335.6:c.366-1_366delinsTT		p.X122_splice	ENST00000265335		122																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839979	27839979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	43	504	0	ENST00000328488.2:c.115C>G	p.Pro39Ala	p.P39A	ENST00000328488	NM_003533.2	39	Ccc/Gcc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450331	50450331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	42	537	0	ENST00000331340.3:c.515C>A	p.Pro172His	p.P172H	ENST00000331340	NM_006060.4	172	cCc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132775	152132775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	69	530	0	ENST00000262189.6:c.97G>A	p.Asp33Asn	p.D33N	ENST00000262189	NM_170606.2	33	Gac/Aac																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772912	135772913	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	223	510	0	ENST00000298552.3:c.2710dup	p.Thr904AsnfsTer46	p.T904Nfs*46	ENST00000298552	NM_001162426.1	904	acc/aAcc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949155	44949155	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	167	336	0	ENST00000377967.4:c.3717del	p.Trp1239Ter	p.W1239*	ENST00000377967	NM_021140.2	1239	tGg/tg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123196809	123196810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAA			P-0044697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	125	494	0	ENST00000218089.9:c.1696_1697insAAAA	p.Leu566GlnfsTer23	p.L566Qfs*23	ENST00000218089	NM_001042749.1	566	ctt/cAAAAtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	154	415	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0044742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	235	457	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0044742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	235	457	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	84	565	0	ENST00000324856.7:c.3977dup	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0044742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	235	457	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	DEL	A	A	-			P-0044742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	121	578	0	ENST00000269305.4:c.993+2del		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604650	48604651	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0044742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	60	307	0	ENST00000342988.3:c.1474_1475del	p.Val492Ter	p.V492*	ENST00000342988	NM_005359.5	491	gGT/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7576858	7576858	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	353	487	0	ENST00000269305.4:c.988del	p.Leu330PhefsTer15	p.L330Ffs*15	ENST00000269305	NM_001126112.2	330	Ctt/tt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462003	120462003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	87	499	0	ENST00000256646.2:c.5713G>T	p.Ala1905Ser	p.A1905S	ENST00000256646	NM_024408.3	1905	Gcc/Tcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29553560	29553561	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0044770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	138	254	0	ENST00000358273.4:c.2110_2111del	p.Leu704GlyfsTer11	p.L704Gfs*11	ENST00000358273	NM_001042492.2	703	gtTCtg/gttg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245890	41245902	+	frameshift_variant	Frame_Shift_Del	DEL	TGACCACTATTAG	TGACCACTATTAG	-			P-0044770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	117	554	1	ENST00000357654.3:c.1646_1658del	p.Thr549MetfsTer19	p.T549Mfs*19	ENST00000357654	NM_007294.3	549	aCTAATAGTGGTCAt/at																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729380	41729381	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0044770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	239	529	0	ENST00000242208.4:c.1148_1149delinsAA	p.Pro383Gln	p.P383Q	ENST00000242208	NM_002192.2	383	cCC/cAA																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	102	311	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259034	89259034	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	37	238	1	ENST00000336596.2:c.178G>T	p.Glu60Ter	p.E60*	ENST00000336596	NM_005233.5	60	Gaa/Taa																																																																														
RET	5979	MSKCC	GRCh37	10	43600595	43600595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	139	640	0	ENST00000355710.3:c.821C>T	p.Ala274Val	p.A274V	ENST00000355710	NM_020975.4	274	gCg/gTg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204866	94204866	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	45	378	0	ENST00000323929.3:c.719T>A	p.Leu240His	p.L240H	ENST00000323929	NM_005591.3	240	cTt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420798	49420798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	85	553	0	ENST00000301067.7:c.14951G>C	p.Gly4984Ala	p.G4984A	ENST00000301067	NM_003482.3	4984	gGa/gCa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066946	30066946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	68	348	0	ENST00000331968.5:c.2185G>T	p.Gly729Cys	p.G729C	ENST00000331968	NM_002742.2	729	Ggt/Tgt																																																																														
ALK	238	MSKCC	GRCh37	2	29416701	29416701	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	79	462	0	ENST00000389048.3:c.4252C>G	p.Pro1418Ala	p.P1418A	ENST00000389048	NM_004304.4	1418	Cct/Gct																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023993	31023993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	122	611	0	ENST00000375687.4:c.3478G>A	p.Gly1160Ser	p.G1160S	ENST00000375687	NM_015338.5	1160	Ggc/Agc																																																																														
MYC	4609	MSKCC	GRCh37	8	128751083	128751083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	116	611	0	ENST00000377970.2:c.620C>T	p.Ser207Leu	p.S207L	ENST00000377970	NM_002467.4	207	tCg/tTg																																																																														
FANCC	2176	MSKCC	GRCh37	9	97888833	97888833	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1306075116		P-0044782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	47	418	0	ENST00000289081.3:c.874C>T	p.Arg292Trp	p.R292W	ENST00000289081	NM_000136.2	292	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	303	677	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	26	362	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TEK	7010	MSKCC	GRCh37	9	27192565	27192565	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	55	496	0	ENST00000380036.4:c.1568G>C	p.Gly523Ala	p.G523A	ENST00000380036	NM_000459.3	523	gGa/gCa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777670	9777670	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760642664		P-0044815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	110	732	0	ENST00000377346.4:c.1006G>A	p.Asp336Asn	p.D336N	ENST00000377346	NM_005026.3	336	Gac/Aac																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115282480	115282480	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs777883903		P-0044815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	47	361	0	ENST00000438362.2:c.170A>G	p.Asn57Ser	p.N57S	ENST00000438362	NM_001242891.1	57	aAt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0044815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	38	368	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231166	46231166	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	49	293	0	ENST00000334344.6:c.1086T>A	p.Cys362Ter	p.C362*	ENST00000334344	NM_152641.2	362	tgT/tgA																																																																														
LATS2	26524	MSKCC	GRCh37	13	21620092	21620092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	94	538	1	ENST00000382592.4:c.74G>A	p.Gly25Glu	p.G25E	ENST00000382592	NM_014572.2	25	gGg/gAg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28592650	28592650	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	135	497	0	ENST00000241453.7:c.2495T>C	p.Leu832Ser	p.L832S	ENST00000241453	NM_004119.2	832	tTg/tCg																																																																														
MGA	23269	MSKCC	GRCh37	15	42041375	42041375	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	173	613	0	ENST00000219905.7:c.5570C>A	p.Ser1857Ter	p.S1857*	ENST00000219905	NM_001164273.1	1857	tCg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0044815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	278	838	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0044815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	118	638	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214372	5214372	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0044815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	71	490	0	ENST00000357368.4:c.4614G>T	p.Lys1538Asn	p.K1538N	ENST00000357368	NM_002850.3	1538	aaG/aaT																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247165	153247165	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	39	241	0	ENST00000281708.4:c.1637C>G	p.Ser546Ter	p.S546*	ENST00000281708	NM_033632.3	546	tCa/tGa																																																																														
IRF4	3662	MSKCC	GRCh37	6	393189	393189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	93	548	0	ENST00000380956.4:c.37G>A	p.Gly13Ser	p.G13S	ENST00000380956	NM_001195286.1	13	Ggc/Agc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271703	38271703	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1415925468		P-0044815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	117	865	4	ENST00000425967.3:c.2246G>A	p.Arg749His	p.R749H	ENST00000425967	NM_001174067.1	749	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	290	525	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	299	309	0	ENST00000268712.3:c.1573dup	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662023	227662023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776903727		P-0044821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	334	553	1	ENST00000305123.5:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000305123	NM_005544.2	478	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106644	27106644	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	382	619	0	ENST00000324856.7:c.6256del	p.Asp2086ThrfsTer49	p.D2086Tfs*49	ENST00000324856	NM_006015.4	2085	ctG/ct																																																																														
BRAF	673	MSKCC	GRCh37	7	140439660	140439660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	133	313	0	ENST00000288602.6:c.2079G>A	p.Met693Ile	p.M693I	ENST00000288602	NM_004333.4	693	atG/atA																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	50	285	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0044830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	97	313	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0044830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	33	324	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591092	67591092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	79	251	0	ENST00000274335.5:c.1685G>C	p.Arg562Pro	p.R562P	ENST00000274335		562	cGt/cCt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589597	67589597	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	46	208	0	ENST00000274335.5:c.1360A>C	p.Thr454Pro	p.T454P	ENST00000274335		454	Act/Cct																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945637	71945637	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	202	537	0	ENST00000298229.2:c.2393G>A	p.Trp798Ter	p.W798*	ENST00000298229	NM_001567.3	798	tGg/tAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685289	89685289	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	42	171	0	ENST00000371953.3:c.188del	p.Asn63ThrfsTer36	p.N63Tfs*36	ENST00000371953	NM_000314.4	62	Aaa/aa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258036	123258036	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	310	476	0	ENST00000358487.5:c.1645A>G	p.Asn549Asp	p.N549D	ENST00000358487	NM_000141.4	549	Aat/Gat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101109	27101113	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCT	TCTCT	-			P-0044830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	72	765	0	ENST00000324856.7:c.4391_4395del	p.Val1464GlyfsTer25	p.V1464Gfs*25	ENST00000324856	NM_006015.4	1464	gTCTCT/g																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720744	89720745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	19	193	0	ENST00000371953.3:c.898dup	p.Ile300AsnfsTer3	p.I300Nfs*3	ENST00000371953	NM_000314.4	299	gaa/gAaa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94192627	94192627	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs780001540		P-0044830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	153	466	0	ENST00000323929.3:c.1447C>T	p.Arg483Ter	p.R483*	ENST00000323929	NM_005591.3	483	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0044884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	239	618	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061098	38061202	+	inframe_deletion	In_Frame_Del	DEL	GGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	GGGGTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	-			P-0044884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	94	154	0	ENST00000250448.2:c.787_891del	p.Gln263_Pro297del	p.Q263_P297del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGACCCC/-																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198263211	198263211	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	153	404	0	ENST00000335508.6:c.3108T>G	p.Ile1036Met	p.I1036M	ENST00000335508	NM_012433.2	1036	atT/atG																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24133970	24133970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	54	301	0	ENST00000263121.7:c.121G>T	p.Gly41Cys	p.G41C	ENST00000263121	NM_003073.3	41	Ggt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0044921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	166	329	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ARAF	369	MSKCC	GRCh37	X	47424409	47424409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779648831		P-0044921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	229	576	2	ENST00000377045.4:c.329C>T	p.Ala110Val	p.A110V	ENST00000377045	NM_001654.4	110	gCg/gTg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69631129	69631129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs281860303		P-0044921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	310	655	8	ENST00000334134.2:c.283C>T	p.Arg95Trp	p.R95W	ENST00000334134	NM_005247.2	95	Cgg/Tgg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200467	67200467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	238	705	3	ENST00000312629.5:c.661C>T	p.His221Tyr	p.H221Y	ENST00000312629	NM_003952.2	221	Cat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112173388	112173388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1060503282		P-0044921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	107	286	0	ENST00000257430.4:c.2097G>A	p.Trp699Ter	p.W699*	ENST00000257430	NM_000038.5	699	tgG/tgA																																																																														
ATM	472	MSKCC	GRCh37	11	108100002	108100002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781545		P-0044921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	97	237	0	ENST00000278616.4:c.283C>T	p.Gln95Ter	p.Q95*	ENST00000278616	NM_000051.3	95	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431380	49431381	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	187	588	3	ENST00000301067.7:c.9758dup	p.Leu3253PhefsTer4	p.L3253Ffs*4	ENST00000301067	NM_003482.3	3253	ttg/ttTg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554660	63554660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	255	554	4	ENST00000307078.5:c.79C>T	p.Pro27Ser	p.P27S	ENST00000307078	NM_004655.3	27	Cca/Tca																																																																														
APC	324	MSKCC	GRCh37	5	112175441	112175442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTAGCAGATGTACTTCTGTCAGTTCACTTGATAG			P-0044921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	65	252	1	ENST00000257430.4:c.4153_4186dup	p.Phe1396Ter	p.F1396*	ENST00000257430	NM_000038.5	1384	ttt/tTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGtt																																																																														
XIAP	331	MSKCC	GRCh37	X	123019996	123019996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	241	612	1	ENST00000355640.3:c.484A>G	p.Ser162Gly	p.S162G	ENST00000355640		162	Agt/Ggt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	669	552	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0044961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	301	332	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928846	49928846	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371791811		P-0044961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	724	743	0	ENST00000296474.3:c.3520C>T	p.Arg1174Cys	p.R1174C	ENST00000296474	NM_002447.2	1174	Cgc/Tgc																																																																														
ATR	545	MSKCC	GRCh37	3	142176590	142176590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	40	302	0	ENST00000350721.4:c.7511C>A	p.Thr2504Asn	p.T2504N	ENST00000350721	NM_001184.3	2504	aCc/aAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860104	151860120	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAATCAGGAACAAAT	GTGAATCAGGAACAAAT	-			P-0044961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	150	362	0	ENST00000262189.6:c.10542_10558del	p.Phe3515IlefsTer45	p.F3515Ifs*45	ENST00000262189	NM_170606.2	3514	tcATTTGTTCCTGATTCACca/tcca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	42	377	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0044972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	103	687	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0045000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	190	704	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0045000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	91	424	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	26	212	3	ENST00000257430.4:c.3919dup	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347320	89347320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	262	937	0	ENST00000301030.4:c.5630C>G	p.Pro1877Arg	p.P1877R	ENST00000301030	NM_001256183.1	1877	cCg/cGg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259146	89259146	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	23	379	0	ENST00000336596.2:c.290T>C	p.Val97Ala	p.V97A	ENST00000336596	NM_005233.5	97	gTg/gCg																																																																														
APC	324	MSKCC	GRCh37	5	112174604	112174606	+	frameshift_variant	Frame_Shift_Del	DEL	CGG	CGG	CT			P-0045000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	35	388	1	ENST00000257430.4:c.3314_3315delinsT	p.Arg1105LeufsTer21	p.R1105Lfs*21	ENST00000257430	NM_000038.5	1105	CGG/CT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0045274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	80	377	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480028	50480028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs759976916		P-0045274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	91	719	3	ENST00000394963.4:c.262C>T	p.Arg88Ter	p.R88*	ENST00000394963	NM_003076.4	88	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509847	187509847	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	42	375	0	ENST00000441802.2:c.13666G>T	p.Glu4556Ter	p.E4556*	ENST00000441802	NM_005245.3	4556	Gag/Tag																																																																														
PARK2	0	MSKCC	GRCh37	6	162622229	162622229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	88	369	0	ENST00000366898.1:c.468A>T	p.Arg156Ser	p.R156S	ENST00000366898	NM_004562.2	156	agA/agT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	228	529	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	124	486	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	199	639	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637555	52637555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	146	503	0	ENST00000394830.3:c.2761C>T	p.Arg921Ter	p.R921*	ENST00000394830	NM_018313.4	921	Cga/Tga																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	99	502	0	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	245	707	7	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
TERT	7015	MSKCC	GRCh37	5	1278865	1278865	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149566858		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	300	917	0	ENST00000310581.5:c.2177C>T	p.Thr726Met	p.T726M	ENST00000310581	NM_198253.2	726	aCg/aTg																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631629	90631629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367982647		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	133	818	4	ENST00000330062.3:c.640G>A	p.Ala214Thr	p.A214T	ENST00000330062	NM_002168.2	214	Gca/Aca																																																																														
BBC3	27113	MSKCC	GRCh37	19	47725019	47725019	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1039339737		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	146	1032	0	ENST00000449228.1:c.725del	p.Gly242AlafsTer48	p.G242Afs*48	ENST00000449228	NM_001127240.2	242	gGc/gc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40468879	40468879	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	219	519	1	ENST00000264657.5:c.2185del	p.Arg729AlafsTer3	p.R729Afs*3	ENST00000264657	NM_139276.2	729	Cgc/gc																																																																														
SMO	6608	MSKCC	GRCh37	7	128845518	128845518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748004767		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	281	929	2	ENST00000249373.3:c.815C>T	p.Ala272Val	p.A272V	ENST00000249373	NM_005631.4	272	gCg/gTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276289	15276289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755817475		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	160	892	2	ENST00000263388.2:c.5705G>A	p.Arg1902His	p.R1902H	ENST00000263388	NM_000435.2	1902	cGc/cAc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850777	63850777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374377066		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	194	693	1	ENST00000279873.7:c.1555G>A	p.Glu519Lys	p.E519K	ENST00000279873	NM_032199.2	519	Gaa/Aaa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52724280	52724280	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	139	784	0	ENST00000322088.6:c.1415del	p.Lys472SerfsTer28	p.K472Sfs*28	ENST00000322088	NM_014225.5	471	gAa/ga																																																																														
SPOP	8405	MSKCC	GRCh37	17	47677762	47677762	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1380705599		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	100	647	0	ENST00000347630.2:c.1103G>A	p.Arg368His	p.R368H	ENST00000347630	NM_001007230.1	368	cGc/cAc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834537	156834537	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374170641		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	142	1058	0	ENST00000524377.1:c.305G>A	p.Gly102Asp	p.G102D	ENST00000524377	NM_002529.3	102	gGt/gAt																																																																														
RET	5979	MSKCC	GRCh37	10	43597883	43597883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	147	1011	1	ENST00000355710.3:c.431G>T	p.Arg144Leu	p.R144L	ENST00000355710	NM_020975.4	144	cGc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431114	49431114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1397945395		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	278	844	1	ENST00000301067.7:c.10025G>A	p.Arg3342His	p.R3342H	ENST00000301067	NM_003482.3	3342	cGc/cAc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58144997	58144997	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501931		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	240	717	0	ENST00000257904.6:c.347C>T	p.Thr116Met	p.T116M	ENST00000257904	NM_000075.3	116	aCg/aTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822611	72822611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	234	738	0	ENST00000268489.5:c.9564G>T	p.Met3188Ile	p.M3188I	ENST00000268489	NM_006885.3	3188	atG/atT																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110078	8110078	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751644642		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	242	633	0	ENST00000585124.1:c.527G>A	p.Arg176Gln	p.R176Q	ENST00000585124	NM_004217.3	176	cGa/cAa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59857743	59857743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	116	455	3	ENST00000259008.2:c.1814G>A	p.Gly605Asp	p.G605D	ENST00000259008	NM_032043.2	605	gGc/gAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968142	18968142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	130	796	0	ENST00000262803.5:c.1982G>A	p.Gly661Asp	p.G661D	ENST00000262803	NM_002911.3	661	gGc/gAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918076	50918076	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	144	881	1	ENST00000440232.2:c.2393A>C	p.Tyr798Ser	p.Y798S	ENST00000440232	NM_002691.3	798	tAc/tCc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027670	48027670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	64	410	0	ENST00000234420.5:c.2548T>C	p.Tyr850His	p.Y850H	ENST00000234420	NM_000179.2	850	Tac/Cac																																																																														
REL	5966	MSKCC	GRCh37	2	61149222	61149223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	165	436	0	ENST00000295025.8:c.1414dup	p.Met472AsnfsTer16	p.M472Nfs*16	ENST00000295025	NM_002908.2	471	gga/ggAa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070355	37070355	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	166	562	0	ENST00000231790.2:c.1491del	p.Arg498GlufsTer10	p.R498Efs*10	ENST00000231790	NM_000249.3	497	cGg/cg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47142993	47142993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	102	685	0	ENST00000409792.3:c.4970C>A	p.Pro1657His	p.P1657H	ENST00000409792	NM_014159.6	1657	cCt/cAt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436674	52436676	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	367	838	0	ENST00000460680.1:c.1998_2000del	p.Arg667del	p.R667del	ENST00000460680	NM_004656.3	666	agAAGg/agg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643470	52643470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	87	662	0	ENST00000394830.3:c.2426C>T	p.Ala809Val	p.A809V	ENST00000394830	NM_018313.4	809	gCt/gTt																																																																														
TP63	8626	MSKCC	GRCh37	3	189607155	189607155	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1261217150		P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	157	967	0	ENST00000264731.3:c.1534A>G	p.Met512Val	p.M512V	ENST00000264731	NM_003722.4	512	Atg/Gtg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950120	38950120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	213	670	0	ENST00000357387.3:c.3830T>C	p.Leu1277Pro	p.L1277P	ENST00000357387	NM_152756.3	1277	cTg/cCg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722246	176722246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	98	603	1	ENST00000439151.2:c.7877C>T	p.Ala2626Val	p.A2626V	ENST00000439151	NM_022455.4	2626	gCc/gTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140508746	140508746	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	104	679	0	ENST00000288602.6:c.554T>C	p.Leu185Pro	p.L185P	ENST00000288602	NM_004333.4	185	cTg/cCg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	163	480	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	163	267	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367797	15367797	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1195390127		P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	373	686	2	ENST00000263377.2:c.1529G>A	p.Arg510Gln	p.R510Q	ENST00000263377	NM_058243.2	510	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	182	325	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	275	728	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442566	52442566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	208	432	0	ENST00000460680.1:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000460680	NM_004656.3	60	cGa/cAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793433	18793433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202143029		P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	140	399	1	ENST00000266497.5:c.4130G>A	p.Arg1377His	p.R1377H	ENST00000266497		1377	cGt/cAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925326	114925326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	196	466	0	ENST00000543371.1:c.1404G>C	p.Lys468Asn	p.K468N	ENST00000543371	NM_001198531.1	468	aaG/aaC																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805561	46805561	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1286034091		P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	403	829	3	ENST00000290295.7:c.395G>A	p.Gly132Glu	p.G132E	ENST00000290295	NM_006361.5	132	gGa/gAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26101071	26101071	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	204	592	0	ENST00000435504.4:c.21del	p.Lys8ArgfsTer14	p.K8Rfs*14	ENST00000435504		7	agG/ag																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519742		P-0048495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	450	851	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437210	52437210	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0048495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	873	729	0	ENST00000460680.1:c.1834A>T	p.Lys612Ter	p.K612*	ENST00000460680	NM_004656.3	612	Aag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			473	345	662	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			520	371	548	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			379	89	349	0	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227873	55227873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			327	123	382	0	ENST00000275493.2:c.1340C>T	p.Ser447Phe	p.S447F	ENST00000275493	NM_005228.3	447	tCc/tTc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321372	1321372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1319865856		P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			570	148	502	0	ENST00000381566.1:c.383C>T	p.Ser128Leu	p.S128L	ENST00000381566		128	tCg/tTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662618	117662618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			309	171	478	0	ENST00000368508.3:c.4847G>A	p.Gly1616Glu	p.G1616E	ENST00000368508	NM_002944.2	1616	gGa/gAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770630	40770630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			474	185	369	0	ENST00000373198.4:c.2752G>A	p.Gly918Arg	p.G918R	ENST00000373198	NM_133170.3	918	Ggg/Agg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862887	9862887	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868222927		P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			707	156	569	0	ENST00000330684.3:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000330684	NM_001134407.1	806	Gag/Aag																																																																														
CD276	80381	MSKCC	GRCh37	15	73996237	73996237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			189	153	243	0	ENST00000318443.5:c.971C>T	p.Ser324Phe	p.S324F	ENST00000318443	NM_001024736.1	324	tCc/tTc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526594	31526594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			451	213	437	0	ENST00000344624.3:c.446C>T	p.Pro149Leu	p.P149L	ENST00000344624		149	cCc/cTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510155	187510155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			478	80	513	0	ENST00000441802.2:c.13358C>T	p.Pro4453Leu	p.P4453L	ENST00000441802	NM_005245.3	4453	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			336	139	283	0				ENST00000310581	NM_198253.2																																																																																
TRAF7	84231	MSKCC	GRCh37	16	2218123	2218123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747417102		P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			837	255	830	0	ENST00000326181.6:c.185C>T	p.Ser62Phe	p.S62F	ENST00000326181	NM_032271.2	62	tCc/tTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486301	8486301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			237	133	318	0	ENST00000356435.5:c.2516C>T	p.Ala839Val	p.A839V	ENST00000356435		839	gCt/gTt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193219826	193219826	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767254478		P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			143	66	321	0	ENST00000367435.3:c.1580C>T	p.Ser527Leu	p.S527L	ENST00000367435	NM_024529.4	527	tCg/tTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279524	123279524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			464	344	594	0	ENST00000358487.5:c.908C>T	p.Pro303Leu	p.P303L	ENST00000358487	NM_000141.4	303	cCc/cTc																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811733	102811733	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218506999		P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			664	173	671	0	ENST00000307046.8:c.451G>A	p.Gly151Ser	p.G151S	ENST00000307046	NM_001111285.1	151	Ggt/Agt																																																																														
POLE	5426	MSKCC	GRCh37	12	133238143	133238143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			424	105	453	0	ENST00000320574.5:c.2834C>T	p.Ser945Phe	p.S945F	ENST00000320574	NM_006231.2	945	tCc/tTc																																																																														
B2M	567	MSKCC	GRCh37	15	45007683	45007689	+	frameshift_variant	Frame_Shift_Del	DEL	AATTGCT	AATTGCT	-			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			248	140	360	0	ENST00000558401.1:c.131_137del	p.Asn44MetfsTer15	p.N44Mfs*15	ENST00000558401	NM_004048.2	44	AATTGCTat/at																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647875	3647875	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs569588858		P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			933	280	807	0	ENST00000294008.3:c.1289C>T	p.Ser430Leu	p.S430L	ENST00000294008	NM_032444.2	430	tCg/tTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820750	3820750	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148286133		P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			960	332	893	1	ENST00000262367.5:c.2701C>T	p.Pro901Ser	p.P901S	ENST00000262367	NM_004380.2	901	Ccg/Tcg																																																																														
NF1	4763	MSKCC	GRCh37	17	29541586	29541586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			174	66	289	0	ENST00000358273.4:c.1510C>T	p.Pro504Ser	p.P504S	ENST00000358273	NM_001042492.2	504	Cca/Tca																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896556	78896557	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			577	722	856	1	ENST00000306801.3:c.2553_2554delinsAA	p.Asp852Asn	p.D852N	ENST00000306801	NM_020761.2	851	ctGGac/ctAAac																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976138	18976139	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			906	387	906	0	ENST00000262803.5:c.2898_2899delinsAT	p.Gly967Cys	p.G967C	ENST00000262803	NM_002911.3	966	atTGgc/atATgc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431076	181431076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			525	347	615	0	ENST00000325404.1:c.928G>A	p.Gly310Ser	p.G310S	ENST00000325404	NM_003106.3	310	Ggc/Agc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169002	32169002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	444	817	0	ENST00000375023.3:c.4031G>A	p.Gly1344Glu	p.G1344E	ENST00000375023	NM_004557.3	1344	gGg/gAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945662	151945662	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs371433674		P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			674	117	705	0	ENST00000262189.6:c.1857T>G	p.Ile619Met	p.I619M	ENST00000262189	NM_170606.2	619	atT/atG																																																																														
PREX2	80243	MSKCC	GRCh37	8	69012034	69012034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048585-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			555	102	552	0	ENST00000288368.4:c.2671G>A	p.Glu891Lys	p.E891K	ENST00000288368	NM_024870.2	891	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0048761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	15	567	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592075	67592075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs761888083		P-0048761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	12	221	1	ENST00000274335.5:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000274335		631	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923692	72923692	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	15	660	3	ENST00000268489.5:c.3386del	p.Pro1129GlnfsTer58	p.P1129Qfs*58	ENST00000268489	NM_006885.3	1129	cCa/ca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912429	32912430	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	G			P-0048761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	10	240	0	ENST00000380152.3:c.3937_3938delinsG	p.Tyr1313AlafsTer22	p.Y1313Afs*22	ENST00000380152		1313	TAc/Gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781288		P-0049188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	494	1135	2	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061389	38061389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	368	808	0	ENST00000250448.2:c.600C>G	p.Ile200Met	p.I200M	ENST00000250448	NM_004496.3	200	atC/atG																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10277280	10277280	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	29	551	0	ENST00000340748.4:c.837C>G	p.Asp279Glu	p.D279E	ENST00000340748		279	gaC/gaG																																																																														
SDHA	6389	MSKCC	GRCh37	5	223624	223624	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs142441643		P-0002594-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			611	406	375	0	ENST00000264932.6:c.91C>T	p.Arg31Ter	p.R31*	ENST00000264932	NM_004168.2	31	Cga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55946178	55946178	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002594-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	141	551	0	ENST00000263923.4:c.4001T>A	p.Val1334Glu	p.V1334E	ENST00000263923	NM_002253.2	1334	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	14	291	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	20	360	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	66	634	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	22	484	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	55	215	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	44	519	0	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	27	1052	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	85	633	0	ENST00000397062.3:c.241G>C	p.Gly81Arg	p.G81R	ENST00000397062	NM_006164.4	81	Ggt/Cgt																																																																														
ATR	545	MSKCC	GRCh37	3	142231158	142231158	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs749750765		P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	77	655	0	ENST00000350721.4:c.4796T>C	p.Leu1599Pro	p.L1599P	ENST00000350721	NM_001184.3	1599	cTg/cCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187560904	187560904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758878500		P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	44	480	0	ENST00000441802.2:c.3614G>A	p.Arg1205Gln	p.R1205Q	ENST00000441802	NM_005245.3	1205	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1271265	1271265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	25	459	0	ENST00000310581.5:c.2437A>G	p.Met813Val	p.M813V	ENST00000310581	NM_198253.2	813	Atg/Gtg																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045847	26045847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	56	1041	0	ENST00000540144.1:c.209G>A	p.Arg70His	p.R70H	ENST00000540144	NM_003531.2	70	cGc/cAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170328	32170328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	29	311	0	ENST00000375023.3:c.3280C>T	p.His1094Tyr	p.H1094Y	ENST00000375023	NM_004557.3	1094	Cat/Tat																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199883	138199883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144728856		P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	12	277	0	ENST00000237289.4:c.1301C>T	p.Ala434Val	p.A434V	ENST00000237289	NM_001270507.1	434	gCg/gTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522211	157522211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	19	394	0	ENST00000346085.5:c.4483C>T	p.Arg1495Cys	p.R1495C	ENST00000346085	NM_020732.3	1495	Cgc/Tgc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63829475	63829475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	30	358	0	ENST00000279873.7:c.1118A>G	p.Gln373Arg	p.Q373R	ENST00000279873	NM_032199.2	373	cAg/cGg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715711	18715711	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1278385426		P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	44	561	0	ENST00000266497.5:c.3542C>T	p.Ala1181Val	p.A1181V	ENST00000266497		1181	gCc/gTc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99460005	99460005	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201631492		P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	46	415	0	ENST00000268035.6:c.2101G>A	p.Ala701Thr	p.A701T	ENST00000268035	NM_000875.3	701	Gcc/Acc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974943	15974943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	33	497	0	ENST00000268712.3:c.3932G>A	p.Gly1311Asp	p.G1311D	ENST00000268712	NM_006311.3	1311	gGc/gAc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17122496	17122496	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	37	708	0	ENST00000285071.4:c.899A>G	p.Asp300Gly	p.D300G	ENST00000285071	NM_144997.5	300	gAc/gGc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872647	37872647	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140980495		P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	24	459	0	ENST00000269571.5:c.1607G>A	p.Arg536Gln	p.R536Q	ENST00000269571		536	cGg/cAg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59793357	59793357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	55	636	0	ENST00000259008.2:c.2447G>T	p.Trp816Leu	p.W816L	ENST00000259008	NM_032043.2	816	tGg/tTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300155	15300155	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768208563		P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	19	656	0	ENST00000263388.2:c.1121G>A	p.Arg374Gln	p.R374Q	ENST00000263388	NM_000435.2	374	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	31	166	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593375	67593376	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	21	492	0	ENST00000274335.5:c.2121_2122insTT	p.Asp708LeufsTer8	p.D708Lfs*8	ENST00000274335		707	-/TT																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742547	145742547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1426829329		P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	23	330	0	ENST00000428558.2:c.241del	p.His81IlefsTer2	p.H81Ifs*2	ENST00000428558	NM_004260.3	81	Cat/at																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936354	78936354	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	18	430	0	ENST00000306801.3:c.3790del	p.Gln1264ArgfsTer4	p.Q1264Rfs*4	ENST00000306801	NM_020761.2	1262	caC/ca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830603	72830604	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	81	1020	0	ENST00000268489.5:c.5977dup	p.Ser1993PhefsTer36	p.S1993Ffs*36	ENST00000268489	NM_006885.3	1993	tcc/tTcc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923036	44923036	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	50	603	0	ENST00000377967.4:c.1901del	p.Asn634ThrfsTer57	p.N634Tfs*57	ENST00000377967	NM_021140.2	633	Aaa/aa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638605	176638605	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	87	464	0	ENST00000439151.2:c.3205C>G	p.Gln1069Glu	p.Q1069E	ENST00000439151	NM_022455.4	1069	Cag/Gag																																																																														
ATM	472	MSKCC	GRCh37	11	108163486	108163486	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770590652		P-0004814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	53	386	0	ENST00000278616.4:c.4577C>T	p.Pro1526Leu	p.P1526L	ENST00000278616	NM_000051.3	1526	cCc/cTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250874	153251572	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAACTATTCGGTTACCACAAAACTGTAAGCATGTGATCACATGATCATCATGTCCTTTCAGCACCTATAAGAAAGATGTGCAGATTAGAAATATGTTAATTAAATTATGTTCTTTAAAATACTGGTGAAGAGAAAAATGAAGGCATAAACAGGAACAGTAATTTGTAGTCTATCTCTAGAATTTAAATTTATATAAAGCATTATTTTTCCTGGCTGACGAATCCAGAATTAAACATTTTATTGTTTCCATAGTCTATTATTTATACTCAAAACATCAACTATTAAAGTTTTACTGCATCAAGACCTCATAAAGATGGTTCAAACACCAATGTATTTGACAATAATCTATTCCATCTGTTCAAACCAGAAGAATATGCCTCTAATTTTTACAACTTTGACACACAAGAACAAAATAAGCATCTATTAACCACAAAGAGTAACAATTATTAGCATTCTTAAAACAAAAAAAATCATAATATATACATATTAGTATAACAATGTCTCCCCAAATTGGTTTTTTCCAGTTGTAAAAATACGCCCAATAATTTCAAGTGTTTTTACCATTCTTTATGTATTTGAAATGTTATTAGACAGAAAACCAGAATTATGCTTCAATTTGTAAAAATAAGACACACAAAAGTCACCAAATCCAAAACACAGACACTCCTCAAAAAATCATGTTTGGAGTATGTGATCAGA	TAACTATTCGGTTACCACAAAACTGTAAGCATGTGATCACATGATCATCATGTCCTTTCAGCACCTATAAGAAAGATGTGCAGATTAGAAATATGTTAATTAAATTATGTTCTTTAAAATACTGGTGAAGAGAAAAATGAAGGCATAAACAGGAACAGTAATTTGTAGTCTATCTCTAGAATTTAAATTTATATAAAGCATTATTTTTCCTGGCTGACGAATCCAGAATTAAACATTTTATTGTTTCCATAGTCTATTATTTATACTCAAAACATCAACTATTAAAGTTTTACTGCATCAAGACCTCATAAAGATGGTTCAAACACCAATGTATTTGACAATAATCTATTCCATCTGTTCAAACCAGAAGAATATGCCTCTAATTTTTACAACTTTGACACACAAGAACAAAATAAGCATCTATTAACCACAAAGAGTAACAATTATTAGCATTCTTAAAACAAAAAAAATCATAATATATACATATTAGTATAACAATGTCTCCCCAAATTGGTTTTTTCCAGTTGTAAAAATACGCCCAATAATTTCAAGTGTTTTTACCATTCTTTATGTATTTGAAATGTTATTAGACAGAAAACCAGAATTATGCTTCAATTTGTAAAAATAAGACACACAAAAGTCACCAAATCCAAAACACAGACACTCCTCAAAAAATCATGTTTGGAGTATGTGATCAGA	-			P-0004814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	59	354	0	ENST00000281708.4:c.1122+312_1186del		p.X374_splice	ENST00000281708	NM_033632.3	374																																																																															
NF2	4771	MSKCC	GRCh37	22	30054144	30054235	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTCCAATGACAGTGTCTTCCGTTCTCCCCACAGGGATGAAGCTGAAATGGAATATCTGAAGATAGCTCAGGACCTGGAGATGTACGGTGTG	GCTCCAATGACAGTGTCTTCCGTTCTCCCCACAGGGATGAAGCTGAAATGGAATATCTGAAGATAGCTCAGGACCTGGAGATGTACGGTGTG	-			P-0004814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	53	212	0	ENST00000338641.4:c.600-34_657del		p.X200_splice	ENST00000338641	NM_000268.3	200																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1234	162	417	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ATM	472	MSKCC	GRCh37	11	108115697	108115698	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0006352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	159	326	0	ENST00000278616.4:c.846_847del	p.Leu282PhefsTer22	p.L282Ffs*22	ENST00000278616	NM_000051.3	282	tTA/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0006687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	302	455	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836642	89836642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747723074		P-0006687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	315	461	0	ENST00000389301.3:c.2248G>A	p.Val750Met	p.V750M	ENST00000389301	NM_000135.2	750	Gtg/Atg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619037	37619037	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3941	1695	385	0	ENST00000447079.4:c.713C>A	p.Ser238Ter	p.S238*	ENST00000447079	NM_015083.1	238	tCg/tAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266016	41266403	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAAT	GCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAAT	-			P-0006687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	250	335	0	ENST00000349496.5:c.18_242-37del		p.X6_splice	ENST00000349496	NM_001904.3	6																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106592	27106592	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	104	565	0	ENST00000324856.7:c.6203C>A	p.Ser2068Ter	p.S2068*	ENST00000324856	NM_006015.4	2068	tCg/tAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	152	538	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0009001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	234	586	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928075	178928095	+	inframe_deletion	In_Frame_Del	DEL	ATTAGAAGATTTGCTGAACCC	ATTAGAAGATTTGCTGAACCC	-			P-0009001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	117	479	0	ENST00000263967.3:c.1353_1373del	p.Leu452_Pro458del	p.L452_P458del	ENST00000263967	NM_006218.2	451	ggATTAGAAGATTTGCTGAACCCt/ggt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206756	36206757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0009001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	149	385	0	ENST00000300305.3:c.754_755dup	p.Leu253ProfsTer2	p.L253Pfs*2	ENST00000300305		252	tcc/tcTCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	85	574	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	432	515	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			753	188	546	0	ENST00000300305.3:c.367dup	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																														
POLE	5426	MSKCC	GRCh37	12	133226421	133226421	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			860	181	597	0	ENST00000320574.5:c.3637G>C	p.Glu1213Gln	p.E1213Q	ENST00000320574	NM_006231.2	1213	Gag/Cag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			781	166	410	0	ENST00000375023.3:c.5506G>C	p.Glu1836Gln	p.E1836Q	ENST00000375023	NM_004557.3	1836	Gag/Cag																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911266	29911266	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41562120		P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	122	358	0	ENST00000376809.5:c.565G>A	p.Val189Met	p.V189M	ENST00000376809	NM_002116.7	189	Gtg/Atg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259513	16259513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	139	498	1	ENST00000375759.3:c.6778G>T	p.Glu2260Ter	p.E2260*	ENST00000375759	NM_015001.2	2260	Gag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262648	16262648	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	134	472	0	ENST00000375759.3:c.9913G>C	p.Glu3305Gln	p.E3305Q	ENST00000375759	NM_015001.2	3305	Gag/Cag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010522	48010522	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659674		P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	137	298	0	ENST00000234420.5:c.150G>C	p.Trp50Cys	p.W50C	ENST00000234420	NM_000179.2	50	tgG/tgC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970945	21970945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			712	180	605	0	ENST00000304494.5:c.413G>C	p.Arg138Thr	p.R138T	ENST00000304494	NM_000077.4	138	aGa/aCa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970945	21970945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			712	180	605	0	ENST00000304494.5:c.413G>C	p.Arg138Thr	p.R138T	ENST00000304494	NM_000077.4	138	aGa/aCa																																																																														
ATM	472	MSKCC	GRCh37	11	108172469	108172469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	104	522	0	ENST00000278616.4:c.5272G>A	p.Asp1758Asn	p.D1758N	ENST00000278616	NM_000051.3	1758	Gat/Aat																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518199	103518199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	87	341	1	ENST00000355739.4:c.2137G>A	p.Glu713Lys	p.E713K	ENST00000355739	NM_000123.3	713	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	41961991	41961991	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			670	191	623	0	ENST00000219905.7:c.899C>G	p.Ser300Ter	p.S300*	ENST00000219905	NM_001164273.1	300	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579709	7579710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	348	602	0	ENST00000269305.4:c.86dup	p.Asn29LysfsTer14	p.N29Kfs*14	ENST00000269305	NM_001126112.2	29	aac/aaAc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031889	26031889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	113	316	0	ENST00000244661.2:c.400G>C	p.Glu134Gln	p.E134Q	ENST00000244661	NM_003537.3	134	Gaa/Caa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36209263	36209263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	198	461	0	ENST00000222270.7:c.343G>A	p.Asp115Asn	p.D115N	ENST00000222270	NM_014727.1	115	Gac/Aac																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547190	106547190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	1427	290	0	ENST00000369096.4:c.427G>A	p.Glu143Lys	p.E143K	ENST00000369096	NM_001198.3	143	Gag/Aag																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739876	46739876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	146	556	0	ENST00000371975.4:c.1677C>A	p.Phe559Leu	p.F559L	ENST00000371975	NM_003579.3	559	ttC/ttA																																																																														
ATM	472	MSKCC	GRCh37	11	108206571	108206571	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs1398616877		P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	84	334	0	ENST00000278616.4:c.8152-1G>A		p.X2718_splice	ENST00000278616	NM_000051.3	2718																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954253	32954253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			959	127	655	0	ENST00000380152.3:c.9227G>C	p.Gly3076Ala	p.G3076A	ENST00000380152		3076	gGa/gCa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986748	36986748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745510380		P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	56	106	0	ENST00000354822.5:c.941G>A	p.Gly314Asp	p.G314D	ENST00000354822	NM_001079668.2	314	gGc/gAc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226378	2226378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1291	177	702	0	ENST00000326181.6:c.1991C>G	p.Thr664Ser	p.T664S	ENST00000326181	NM_032271.2	664	aCt/aGt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59861728	59861728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			898	169	705	0	ENST00000259008.2:c.1531G>C	p.Glu511Gln	p.E511Q	ENST00000259008	NM_032043.2	511	Gag/Cag																																																																														
TCF3	6929	MSKCC	GRCh37	19	1611758	1611758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			868	235	792	0	ENST00000344749.5:c.1904C>T	p.Ser635Leu	p.S635L	ENST00000344749	NM_001136139.2	635	tCa/tTa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2213859	2213859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			981	163	759	0	ENST00000398665.3:c.1671G>T	p.Lys557Asn	p.K557N	ENST00000398665	NM_032482.2	557	aaG/aaT																																																																														
CIC	23152	MSKCC	GRCh37	19	42798127	42798127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			842	227	722	0	ENST00000575354.2:c.4081G>A	p.Glu1361Lys	p.E1361K	ENST00000575354	NM_015125.3	1361	Gag/Aag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026737	48026737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			662	117	467	1	ENST00000234420.5:c.1615C>T	p.Leu539Phe	p.L539F	ENST00000234420	NM_000179.2	539	Ctt/Ttt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022714	31022714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1261	136	707	0	ENST00000375687.4:c.2199G>C	p.Gln733His	p.Q733H	ENST00000375687	NM_015338.5	733	caG/caC																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024623	31024623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	141	636	0	ENST00000375687.4:c.4108G>A	p.Glu1370Lys	p.E1370K	ENST00000375687	NM_015338.5	1370	Gag/Aag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936558	49936558	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			815	206	811	0	ENST00000296474.3:c.1369G>C	p.Asp457His	p.D457H	ENST00000296474	NM_002447.2	457	Gac/Cac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591070	67591070	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	109	358	0	ENST00000274335.5:c.1663G>C	p.Glu555Gln	p.E555Q	ENST00000274335		555	Gag/Cag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637618	176637618	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			747	168	665	0	ENST00000439151.2:c.2218C>A	p.His740Asn	p.H740N	ENST00000439151	NM_022455.4	740	Cac/Aac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638173	176638173	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			845	216	760	0	ENST00000439151.2:c.2773C>T	p.Gln925Ter	p.Q925*	ENST00000439151	NM_022455.4	925	Cag/Tag																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031927	26031927	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			770	152	454	0	ENST00000244661.2:c.362T>G	p.Met121Arg	p.M121R	ENST00000244661	NM_003537.3	121	aTg/aGg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673866	30673866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	131	410	0	ENST00000376406.3:c.3094G>A	p.Glu1032Lys	p.E1032K	ENST00000376406	NM_014641.2	1032	Gaa/Aaa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675571	30675571	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1385	278	1020	0	ENST00000376406.3:c.2785G>C	p.Asp929His	p.D929H	ENST00000376406	NM_014641.2	929	Gat/Cat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545704	106545704	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			725	130	756	0	ENST00000359195.3:c.3181G>C	p.Glu1061Gln	p.E1061Q	ENST00000359195	NM_002649.2	1061	Gag/Cag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740824	145740824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1048010208		P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	284	795	0	ENST00000428558.2:c.1276G>A	p.Asp426Asn	p.D426N	ENST00000428558	NM_004260.3	426	Gat/Aat																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328367	+	frameshift_variant	Frame_Shift_Del	DEL	CCATCGGGCTCAAATGC	CCATCGGGCTCAAATGC	-			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1392	293	911	0	ENST00000481739.1:c.1281_1297del	p.Ile428GlyfsTer15	p.I428Gfs*15	ENST00000481739	NM_002957.4	427	tCCATCGGGCTCAAATGC/t																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44921917	44921917	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	103	639	0	ENST00000377967.4:c.1451G>C	p.Arg484Thr	p.R484T	ENST00000377967	NM_021140.2	484	aGa/aCa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032536	47032536	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009364-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			664	138	601	0	ENST00000329236.7:c.211C>G	p.Gln71Glu	p.Q71E	ENST00000329236	NM_001204466.1	71	Cag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	151	443	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913285		P-0010043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	77	183	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	131	340	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276310	15276310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369768722		P-0010043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	127	383	0	ENST00000263388.2:c.5684G>A	p.Arg1895His	p.R1895H	ENST00000263388	NM_000435.2	1895	cGc/cAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114276	115114276	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0010427-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	200	543	0	ENST00000257566.3:c.942-1G>C		p.X314_splice	ENST00000257566	NM_016569.3	314																																																																															
ROS1	6098	MSKCC	GRCh37	6	117632191	117632191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010427-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			117	202	668	2	ENST00000368508.3:c.6225C>A	p.Phe2075Leu	p.F2075L	ENST00000368508	NM_002944.2	2075	ttC/ttA																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010427-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	249	721	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246347	53246347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010427-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	206	762	1	ENST00000375401.3:c.635G>A	p.Arg212Gln	p.R212Q	ENST00000375401	NM_004187.3	212	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0014026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	402	656	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0014026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	88	316	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123263394	123263394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773245022		P-0014026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	332	341	0	ENST00000358487.5:c.1349G>A	p.Arg450His	p.R450H	ENST00000358487	NM_000141.4	450	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014232-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	144	812	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519976		P-0014232-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1360	183	1122	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212484000	212484000	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs1369649105		P-0014232-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			586	31	526	1	ENST00000342788.4:c.2203G>T	p.Gly735Cys	p.G735C	ENST00000342788	NM_005235.2	735	Ggt/Tgt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47677762	47677762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014232-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			674	93	489	0	ENST00000347630.2:c.1103G>T	p.Arg368Leu	p.R368L	ENST00000347630	NM_001007230.1	368	cGc/cTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610641	52610641	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014232-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			845	140	664	0	ENST00000394830.3:c.3532G>T	p.Glu1178Ter	p.E1178*	ENST00000394830	NM_018313.4	1178	Gag/Tag																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149452957	149452957	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014232-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	117	779	0	ENST00000286301.3:c.989G>C	p.Gly330Ala	p.G330A	ENST00000286301	NM_005211.3	330	gGc/gCc																																																																														
KDR	3791	MSKCC	GRCh37	4	55961055	55961055	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1229432573		P-0014232-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	85	946	4	ENST00000263923.4:c.2885G>A	p.Arg962His	p.R962H	ENST00000263923	NM_002253.2	962	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	159	500	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0014940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	179	442	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29576135	29576135	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs868573462		P-0014940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	24	499	0	ENST00000358273.4:c.4108C>T	p.Gln1370Ter	p.Q1370*	ENST00000358273	NM_001042492.2	1370	Cag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68853329	68853330	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0014940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	274	575	0	ENST00000261769.5:c.1711+2dup		p.X571_splice	ENST00000261769	NM_004360.3	571																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0017479-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	209	544	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
NBN	4683	MSKCC	GRCh37	8	90958409	90958409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730881856		P-0017479-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	41	350	0	ENST00000265433.3:c.2029G>A	p.Asp677Asn	p.D677N	ENST00000265433	NM_002485.4	677	Gat/Aat																																																																														
STK19	8859	MSKCC	GRCh37	6	31940508	31940508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017479-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			930	85	608	0	ENST00000375331.2:c.541G>C	p.Asp181His	p.D181H	ENST00000375331	NM_004197.1	181	Gac/Cac																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420191	88420191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017479-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			644	94	513	0	ENST00000360948.2:c.2495C>A	p.Pro832Gln	p.P832Q	ENST00000360948	NM_001012338.2	832	cCa/cAa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038203	128038203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017479-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			698	63	506	0	ENST00000285398.2:c.1347G>C	p.Lys449Asn	p.K449N	ENST00000285398	NM_000122.1	449	aaG/aaC																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39325116	39325116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017479-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			864	943	582	0	ENST00000373001.3:c.203G>A	p.Gly68Glu	p.G68E	ENST00000373001	NM_022157.3	68	gGa/gAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188788	32188788	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017479-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			949	173	642	0	ENST00000375023.3:c.766G>C	p.Asp256His	p.D256H	ENST00000375023	NM_004557.3	256	Gac/Cac																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0017741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	20	370	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
CIC	23152	MSKCC	GRCh37	19	42798773	42798773	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1269420975		P-0018206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	203	476	0	ENST00000575354.2:c.4345G>A	p.Val1449Met	p.V1449M	ENST00000575354	NM_015125.3	1449	Gtg/Atg																																																																														
ATR	545	MSKCC	GRCh37	3	142183992	142183992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	110	610	0	ENST00000350721.4:c.6988G>A	p.Asp2330Asn	p.D2330N	ENST00000350721	NM_001184.3	2330	Gat/Aat																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	594	497	0	ENST00000412585.2:c.19C>G	p.Arg7Gly	p.R7G	ENST00000412585	NM_005514.6	7	Cga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0020440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	64	907	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs942158624		P-0020593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	126	304	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509676	106509676	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139426517		P-0020593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	158	249	0	ENST00000359195.3:c.1670C>T	p.Ala557Val	p.A557V	ENST00000359195	NM_002649.2	557	gCg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426544	49426544	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	138	386	1	ENST00000301067.7:c.11944C>T	p.Arg3982Ter	p.R3982*	ENST00000301067	NM_003482.3	3982	Cga/Tga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115386	115115386	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0020593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	236	241	0	ENST00000257566.3:c.940del	p.Arg314GlufsTer9	p.R314Efs*9	ENST00000257566	NM_016569.3	314	Aga/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	348	903	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569702	95569702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	168	333	0	ENST00000343455.3:c.4031C>T	p.Ser1344Leu	p.S1344L	ENST00000343455	NM_177438.2	1344	tCa/tTa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519733		P-0020733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	505	1326	2	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	290	447	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266649	41266649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	351	777	1	ENST00000349496.5:c.446C>A	p.Ala149Asp	p.A149D	ENST00000349496	NM_001904.3	149	gCc/gAc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680736	30680736	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	132	828	0	ENST00000376406.3:c.983A>T	p.Asp328Val	p.D328V	ENST00000376406	NM_014641.2	328	gAc/gTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	373	1141	3	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969933	81969933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752209691		P-0021182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	283	900	0	ENST00000359376.3:c.3002G>A	p.Arg1001His	p.R1001H	ENST00000359376	NM_002661.3	1001	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107135	27107136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	374	944	0	ENST00000324856.7:c.6747dup	p.Glu2250ArgfsTer28	p.E2250Rfs*28	ENST00000324856	NM_006015.4	2249	tca/tcAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436952	49436952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748653082		P-0021182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	349	1238	0	ENST00000301067.7:c.5551G>A	p.Val1851Met	p.V1851M	ENST00000301067	NM_003482.3	1851	Gtg/Atg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998987	11998988	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	186	673	0	ENST00000353533.5:c.493dup	p.Tyr165LeufsTer9	p.Y165Lfs*9	ENST00000353533	NM_003010.3	163	-/T																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0021268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	90	521	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	71	455	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0021268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	177	971	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484355	8484355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	80	666	0	ENST00000356435.5:c.3177G>T	p.Met1059Ile	p.M1059I	ENST00000356435		1059	atG/atT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179197	123179197	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	69	336	0	ENST00000218089.9:c.646C>T	p.Arg216Ter	p.R216*	ENST00000218089	NM_001042749.1	216	Cga/Tga																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45795022	45795022	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	75	850	0	ENST00000372115.3:c.1564C>G	p.His522Asp	p.H522D	ENST00000372115	NM_001048171.1	522	Cac/Gac																																																																														
ATM	472	MSKCC	GRCh37	11	108196240	108196240	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786202094		P-0021268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	65	601	0	ENST00000278616.4:c.6776C>G	p.Ser2259Cys	p.S2259C	ENST00000278616	NM_000051.3	2259	tCt/tGt																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325723	30325723	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	54	441	0	ENST00000322652.5:c.1921G>C	p.Glu641Gln	p.E641Q	ENST00000322652	NM_015355.2	641	Gaa/Caa																																																																														
CCND3	896	MSKCC	GRCh37	6	41903769	41903769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	61	885	0	ENST00000372991.4:c.788C>T	p.Ser263Phe	p.S263F	ENST00000372991	NM_001760.3	263	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93953233	93953233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	59	754	0	ENST00000369303.4:c.2908C>A	p.Leu970Met	p.L970M	ENST00000369303	NM_004440.3	970	Ctg/Atg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141551324	141551324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1442254850		P-0021268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	115	1223	1	ENST00000220592.5:c.1973G>A	p.Arg658His	p.R658H	ENST00000220592	NM_012154.3	658	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0021650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	12	464	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	31	666	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	47	835	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	37	543	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519991		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	46	727	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	37	665	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
ETV6	2120	MSKCC	GRCh37	12	12038902	12038902	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs724159945		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	67	595	0	ENST00000396373.4:c.1195C>T	p.Arg399Cys	p.R399C	ENST00000396373	NM_001987.4	399	Cgc/Tgc																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	49	679	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	64	531	0	ENST00000342988.3:c.1610A>C	p.Asp537Ala	p.D537A	ENST00000342988	NM_005359.5	537	gAc/gCc																																																																														
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	22	323	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969845	81969845	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369090249		P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	71	738	2	ENST00000359376.3:c.2914G>A	p.Val972Ile	p.V972I	ENST00000359376	NM_002661.3	972	Gtc/Atc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37667846	37667846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	35	688	1	ENST00000447079.4:c.2731G>A	p.Glu911Lys	p.E911K	ENST00000447079	NM_015083.1	911	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76814171	76814171	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	28	483	0	ENST00000373344.5:c.6473A>G	p.Lys2158Arg	p.K2158R	ENST00000373344	NM_000489.3	2158	aAg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578388	7578394	+	protein_altering_variant	In_Frame_Del	DEL	CGCTCAT	CGCTCAT	A			P-0022132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	44	689	0	ENST00000269305.4:c.536_542delinsT	p.His179_Arg181delinsLeu	p.H179_R181delinsL	ENST00000269305	NM_001126112.2	179	cATGAGCGc/cTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0022311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	96	364	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs79184941		P-0022311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	35	350	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs587776667		P-0022311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	156	499	0	ENST00000371953.3:c.253+1G>T		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624263	89624263	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	48	433	0	ENST00000371953.3:c.37A>G	p.Lys13Glu	p.K13E	ENST00000371953	NM_000314.4	13	Aaa/Gaa																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	228	621	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	17	68	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106536	27106536	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	326	1022	0	ENST00000324856.7:c.6147G>A	p.Trp2049Ter	p.W2049*	ENST00000324856	NM_006015.4	2049	tgG/tgA																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577157	64577160	+	frameshift_variant	Frame_Shift_Del	DEL	GACT	GACT	-			P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	300	887	0	ENST00000337652.1:c.422_425del	p.Gln141ProfsTer12	p.Q141Pfs*12	ENST00000337652	NM_130803.2	141	cAGTCc/cc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610591	10610591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	310	805	1	ENST00000171111.5:c.119C>A	p.Ala40Glu	p.A40E	ENST00000171111	NM_203500.1	40	gCg/gAg																																																																														
CENPA	1058	MSKCC	GRCh37	2	27015053	27015053	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151098324		P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	201	567	0	ENST00000335756.4:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000335756	NM_001809.3	52	cGa/cAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41513455	41513458	+	frameshift_variant	Frame_Shift_Del	DEL	GCAT	GCAT	-			P-0024043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	190	685	0	ENST00000263253.7:c.360_363del	p.Ser120ArgfsTer6	p.S120Rfs*6	ENST00000263253	NM_001429.3	120	aGCATg/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	44	614	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0024513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	63	534	1	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	34	412	0	ENST00000371953.3:c.494G>A	p.Gly165Glu	p.G165E	ENST00000371953	NM_000314.4	165	gGa/gAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27058039	27058039	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	113	520	1	ENST00000324856.7:c.1747C>T	p.Gln583Ter	p.Q583*	ENST00000324856	NM_006015.4	583	Cag/Tag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026176	48026176	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881787		P-0024513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	17	368	0	ENST00000234420.5:c.1054G>A	p.Val352Ile	p.V352I	ENST00000234420	NM_000179.2	352	Gtt/Att																																																																														
APC	324	MSKCC	GRCh37	5	112170746	112170746	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	63	542	0	ENST00000257430.4:c.1842del	p.Leu616TrpfsTer14	p.L616Wfs*14	ENST00000257430	NM_000038.5	614	gcA/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs11575997		P-0024926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	204	506	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0026453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	122	587	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	389	686	4	ENST00000269305.4:c.681dup	p.Asp228Ter	p.D228*	ENST00000269305	NM_001126112.2	227	-/T																																																																														
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1131691043		P-0027025-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			113	723	763	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251635	212251635	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1211840752		P-0027025-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			391	129	436	2	ENST00000342788.4:c.3424C>T	p.Arg1142Ter	p.R1142*	ENST00000342788	NM_005235.2	1142	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027025-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			109	306	352	0	ENST00000304494.5:c.318dup	p.Arg107AlafsTer13	p.R107Afs*13	ENST00000304494	NM_000077.4	106	-/G																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027025-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			109	306	352	0	ENST00000304494.5:c.318dup	p.Arg107AlafsTer13	p.R107Afs*13	ENST00000304494	NM_000077.4	106	-/G																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027025-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			109	306	352	0	ENST00000304494.5:c.318dup	p.Arg107AlafsTer13	p.R107Afs*13	ENST00000304494	NM_000077.4	106	-/G																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027025-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			203	289	404	1	ENST00000324856.7:c.666C>A	p.Tyr222Ter	p.Y222*	ENST00000324856	NM_006015.4	222	taC/taA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929084	32929099	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTGACTTTGGAAAA	ATCTGACTTTGGAAAA	-			P-0027025-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			213	111	497	0	ENST00000380152.3:c.7098_7113del	p.Thr2367GlnfsTer4	p.T2367Qfs*4	ENST00000380152		2365	cATCTGACTTTGGAAAAa/ca																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435669	110435669	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs910525456		P-0027025-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			82	339	418	0	ENST00000375856.3:c.2732C>T	p.Pro911Leu	p.P911L	ENST00000375856	NM_003749.2	911	cCg/cTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95597861	95597861	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027025-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			204	132	405	0	ENST00000343455.3:c.423G>C	p.Glu141Asp	p.E141D	ENST00000343455	NM_177438.2	141	gaG/gaC																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11113810	11113810	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027025-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			607	462	611	0	ENST00000344626.4:c.1918G>T	p.Glu640Ter	p.E640*	ENST00000344626	NM_003072.3	640	Gag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55225370	55225370	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027025-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			671	529	477	1	ENST00000275493.2:c.1222C>T	p.Gln408Ter	p.Q408*	ENST00000275493	NM_005228.3	408	Cag/Tag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28882982	28882982	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0027025-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			269	151	503	0	ENST00000282397.4:c.3718G>C	p.Asp1240His	p.D1240H	ENST00000282397	NM_002019.4	1240	Gat/Cat																																																																														
MET	4233	MSKCC	GRCh37	7	116339548	116339548	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027025-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			294	75	307	0	ENST00000397752.3:c.410A>T	p.Asn137Ile	p.N137I	ENST00000397752	NM_000245.2	137	aAc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	307	591	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0027706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	62	271	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913400		P-0027958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	147	376	1	ENST00000349496.5:c.98C>A	p.Ser33Tyr	p.S33Y	ENST00000349496	NM_001904.3	33	tCt/tAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0027958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	490	389	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198306	185198306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs528512189		P-0027958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	239	545	0	ENST00000265026.3:c.2788C>T	p.Arg930Cys	p.R930C	ENST00000265026	NM_004721.4	930	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059176	27059176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	201	447	0	ENST00000324856.7:c.1813C>T	p.Gln605Ter	p.Q605*	ENST00000324856	NM_006015.4	605	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27093027	27093028	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	214	512	0	ENST00000324856.7:c.2961dup	p.Thr988AspfsTer19	p.T988Dfs*19	ENST00000324856	NM_006015.4	986	-/G																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696718	47696718	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	381	443	0	ENST00000347630.2:c.230A>T	p.Asp77Val	p.D77V	ENST00000347630	NM_001007230.1	77	gAt/gTt																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793270	33793270	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1245499278		P-0027958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	89	176	0	ENST00000498907.2:c.51C>A	p.Ser17Arg	p.S17R	ENST00000498907	NM_004364.3	17	agC/agA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0028660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			174	70	327	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0028660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	56	273	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0028660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	62	326	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0028660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			113	43	144	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	55	334	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172028	32172028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761216718		P-0028660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	45	328	0	ENST00000375023.3:c.3004C>T	p.Arg1002Cys	p.R1002C	ENST00000375023	NM_004557.3	1002	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	90	358	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	104	513	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	105	469	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
RB1	5925	MSKCC	GRCh37	13	49030368	49030368	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	62	306	2	ENST00000267163.4:c.1848del	p.Gly617ValfsTer6	p.G617Vfs*6	ENST00000267163	NM_000321.2	615	Aaa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916728	178916728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	55	326	0	ENST00000263967.3:c.115G>A	p.Glu39Lys	p.E39K	ENST00000263967	NM_006218.2	39	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934606	9934606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	70	394	0	ENST00000330684.3:c.1549G>A	p.Glu517Lys	p.E517K	ENST00000330684	NM_001134407.1	517	Gaa/Aaa																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599207	28599207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	166	639	0	ENST00000253063.3:c.653C>T	p.Pro218Leu	p.P218L	ENST00000253063	NM_031459.4	218	cCt/cTt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745460	162745460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	129	293	0	ENST00000367921.3:c.1875G>T	p.Glu625Asp	p.E625D	ENST00000367921	NM_006182.2	625	gaG/gaT																																																																														
CDC73	79577	MSKCC	GRCh37	1	193121515	193121515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	51	238	0	ENST00000367435.3:c.913G>A	p.Glu305Lys	p.E305K	ENST00000367435	NM_024529.4	305	Gaa/Aaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70406072	70406072	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	116	541	0	ENST00000373644.4:c.3586C>T	p.Gln1196Ter	p.Q1196*	ENST00000373644	NM_030625.2	1196	Caa/Taa																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67198915	67198915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	84	431	0	ENST00000312629.5:c.386C>T	p.Pro129Leu	p.P129L	ENST00000312629	NM_003952.2	129	cCc/cTc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94917644	94917644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	55	467	0	ENST00000536441.1:c.877G>C	p.Glu293Gln	p.E293Q	ENST00000536441	NM_144665.3	293	Gag/Cag																																																																														
FLT3	2322	MSKCC	GRCh37	13	28610129	28610129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	103	410	0	ENST00000241453.7:c.1361C>T	p.Ser454Leu	p.S454L	ENST00000241453	NM_004119.2	454	tCg/tTg																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40681733	40681733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	70	384	1	ENST00000249776.8:c.512C>T	p.Ser171Leu	p.S171L	ENST00000249776	NM_033286.3	171	tCa/tTa																																																																														
MSI2	124540	MSKCC	GRCh37	17	55704590	55704590	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	111	535	0	ENST00000284073.2:c.653G>T	p.Gly218Val	p.G218V	ENST00000284073	NM_138962.2	218	gGa/gTa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909455	50909455	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	99	545	0	ENST00000440232.2:c.1259T>G	p.Phe420Cys	p.F420C	ENST00000440232	NM_002691.3	420	tTc/tGc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539741	187539741	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1423289460		P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	63	317	0	ENST00000441802.2:c.7999G>A	p.Glu2667Lys	p.E2667K	ENST00000441802	NM_005245.3	2667	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967840	93967840	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	102	381	0	ENST00000369303.4:c.2087A>G	p.His696Arg	p.H696R	ENST00000369303	NM_004440.3	696	cAt/cGt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715354	117715354	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	52	241	0	ENST00000368508.3:c.1135C>G	p.Gln379Glu	p.Q379E	ENST00000368508	NM_002944.2	379	Caa/Gaa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129225	152129225	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1180943277		P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	181	559	0	ENST00000206249.3:c.178T>C	p.Tyr60His	p.Y60H	ENST00000206249	NM_000125.3	60	Tac/Cac																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935676	13935676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	80	407	0	ENST00000405192.2:c.1180G>C	p.Asp394His	p.D394H	ENST00000405192	NM_001163147.1	394	Gat/Cat																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729909	41729909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	117	456	0	ENST00000242208.4:c.620C>T	p.Ser207Phe	p.S207F	ENST00000242208	NM_002192.2	207	tCt/tTt																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80343451	80343451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	66	268	0	ENST00000286548.4:c.868G>A	p.Asp290Asn	p.D290N	ENST00000286548	NM_002072.3	290	Gac/Aac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399171	139399171	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	129	553	0	ENST00000277541.6:c.4972G>T	p.Glu1658Ter	p.E1658*	ENST00000277541	NM_017617.3	1658	Gag/Tag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411996	63411996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	183	280	0	ENST00000330258.3:c.1171G>C	p.Glu391Gln	p.E391Q	ENST00000330258	NM_152424.3	391	Gag/Cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105436	27105584	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGGTCTCTCAAGTCAATAATTCTGTTCTTAGGCCACTTTTCTCCCTTAATTTATTTCCTGTTCTTTCTCTTTTTAGCTCCCAGGGTTGCTAGAGCTCCTTGTAGAATATTTCCGACGATGCCTGATTGAGATCTTTGGCATTTTAAA	GGAGGTCTCTCAAGTCAATAATTCTGTTCTTAGGCCACTTTTCTCCCTTAATTTATTTCCTGTTCTTTCTCTTTTTAGCTCCCAGGGTTGCTAGAGCTCCTTGTAGAATATTTCCGACGATGCCTGATTGAGATCTTTGGCATTTTAAA	-			P-0029336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	21	90	0	ENST00000324856.7:c.5125-74_5199del		p.X1709_splice	ENST00000324856	NM_006015.4	1709																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874250	155874250	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	67	508	0	ENST00000368323.3:c.281A>T	p.Glu94Val	p.E94V	ENST00000368323	NM_006912.5	94	gAa/gTa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533818	63533818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	180	439	0	ENST00000307078.5:c.1336G>A	p.Val446Ile	p.V446I	ENST00000307078	NM_004655.3	446	Gtc/Atc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860354	151860354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	106	425	0	ENST00000262189.6:c.10308G>C	p.Met3436Ile	p.M3436I	ENST00000262189	NM_170606.2	3436	atG/atC																																																																														
ABL1	25	MSKCC	GRCh37	9	133760456	133760456	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	91	539	0	ENST00000318560.5:c.2779G>C	p.Val927Leu	p.V927L	ENST00000318560	NM_005157.4	927	Gtc/Ctc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938455	44938456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0029336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	20	260	0	ENST00000377967.4:c.3007_3008dup	p.Gln1003HisfsTer46	p.Q1003Hfs*46	ENST00000377967	NM_021140.2	1001	-/AC																																																																														
TP53	7157	MSKCC	GRCh37	17	7576889	7576890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	106	596	0	ENST00000269305.4:c.956dup	p.Lys320GlufsTer17	p.K320Efs*17	ENST00000269305	NM_001126112.2	319	aag/aaAg																																																																														
CD79B	974	MSKCC	GRCh37	17	62006799	62006799	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	79	549	0	ENST00000392795.3:c.589T>G	p.Tyr197Asp	p.Y197D	ENST00000392795	NM_001039933.1	197	Tac/Gac																																																																														
LMO1	4004	MSKCC	GRCh37	11	8252006	8252006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	54	647	1	ENST00000335790.3:c.71G>T	p.Cys24Phe	p.C24F	ENST00000335790	NM_002315.2	24	tGt/tTt																																																																														
RB1	5925	MSKCC	GRCh37	13	48951123	48951123	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	23	357	0	ENST00000267163.4:c.1285A>T	p.Lys429Ter	p.K429*	ENST00000267163	NM_000321.2	429	Aaa/Taa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514688	103514688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	77	357	0	ENST00000355739.4:c.1189G>T	p.Asp397Tyr	p.D397Y	ENST00000355739	NM_000123.3	397	Gat/Tat																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138407752	138407752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	37	444	0	ENST00000289153.2:c.2101G>A	p.Gly701Arg	p.G701R	ENST00000289153	NM_006219.2	701	Gga/Aga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876400	35876400	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	88	553	0	ENST00000303115.3:c.1192C>A	p.Pro398Thr	p.P398T	ENST00000303115	NM_002185.3	398	Cct/Act																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046041	180046041	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	38	196	0	ENST00000261937.6:c.2830del	p.Asp944ThrfsTer63	p.D944Tfs*63	ENST00000261937	NM_182925.4	944	Gac/ac																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047945	180047946	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	152	664	1	ENST00000261937.6:c.2229_2230delinsAT	p.Gly744Ter	p.G744*	ENST00000261937	NM_182925.4	743	gcGGga/gcATga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163886	152163886	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	38	447	0	ENST00000206249.3:c.607G>T	p.Glu203Ter	p.E203*	ENST00000206249	NM_000125.3	203	Gag/Tag																																																																														
HGF	3082	MSKCC	GRCh37	7	81374333	81374333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	46	334	1	ENST00000222390.5:c.729C>A	p.His243Gln	p.H243Q	ENST00000222390	NM_000601.4	243	caC/caA																																																																														
BRAF	673	MSKCC	GRCh37	7	140508791	140508791	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1409723450		P-0029585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	41	373	0	ENST00000288602.6:c.509C>T	p.Pro170Leu	p.P170L	ENST00000288602	NM_004333.4	170	cCt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	472	415	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	202	708	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134992	2134992	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774441486		P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	228	692	1	ENST00000219476.3:c.4534G>A	p.Asp1512Asn	p.D1512N	ENST00000219476	NM_000548.3	1512	Gac/Aac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129645	11129691	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAAGGTGT	CTGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAAGGTGT	-			P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	61	575	0	ENST00000344626.4:c.2453_2499del	p.Trp818LeufsTer111	p.W818Lfs*111	ENST00000344626	NM_003072.3	817	aaCTGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAAGGTGTct/aact																																																																														
EP300	2033	MSKCC	GRCh37	22	41527514	41527514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	222	624	0	ENST00000263253.7:c.1405G>A	p.Ala469Thr	p.A469T	ENST00000263253	NM_001429.3	469	Gca/Aca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971198	21971199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	113	369	0	ENST00000304494.5:c.158_159dup	p.Met54Ter	p.M54*	ENST00000304494	NM_000077.4	53	-/TG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971198	21971199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	113	369	0	ENST00000304494.5:c.158_159dup	p.Met54Ter	p.M54*	ENST00000304494	NM_000077.4	53	-/TG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971198	21971199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0029982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	113	369	0	ENST00000304494.5:c.158_159dup	p.Met54Ter	p.M54*	ENST00000304494	NM_000077.4	53	-/TG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0030882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	148	642	1	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029257	14029257	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1367489461		P-0030882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	98	393	0	ENST00000311895.7:c.1468C>T	p.Arg490Trp	p.R490W	ENST00000311895	NM_005236.2	490	Cgg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857250	9857250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866228360		P-0030882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	77	504	0	ENST00000330684.3:c.4151C>T	p.Ser1384Leu	p.S1384L	ENST00000330684	NM_001134407.1	1384	tCg/tTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3823901	3823901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	125	606	0	ENST00000262367.5:c.2314C>T	p.Pro772Ser	p.P772S	ENST00000262367	NM_004380.2	772	Cct/Tct																																																																														
WT1	7490	MSKCC	GRCh37	11	32421502	32421502	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1319143060		P-0030882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	119	409	1	ENST00000332351.3:c.1090G>A	p.Gly364Ser	p.G364S	ENST00000332351	NM_024426.4	364	Ggc/Agc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228985	36228989	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTT	CTGTT	-			P-0030882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	91	597	0	ENST00000222270.7:c.7769_7773del	p.Phe2590Ter	p.F2590*	ENST00000222270	NM_014727.1	2589	CTGTTc/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	334	584	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0031103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	158	307	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0031103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	50	206	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
CALR	811	MSKCC	GRCh37	19	13049996	13049996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	83	431	0	ENST00000316448.5:c.140G>A	p.Gly47Asp	p.G47D	ENST00000316448	NM_004343.3	47	gGc/gAc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691842	30691842	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	114	343	1	ENST00000359013.4:c.419A>T	p.Asp140Val	p.D140V	ENST00000359013	NM_001024847.2	140	gAt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	357	836	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1321583762		P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	252	356	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	99	525	0	ENST00000263967.3:c.1033A>T	p.Asn345Tyr	p.N345Y	ENST00000263967	NM_006218.2	345	Aat/Tat																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120502050	120502050	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	128	678	0	ENST00000256646.2:c.1991A>C	p.Asn664Thr	p.N664T	ENST00000256646	NM_024408.3	664	aAt/aCt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18473931	18473931	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	118	619	0	ENST00000266497.5:c.1173A>C	p.Gln391His	p.Q391H	ENST00000266497		391	caA/caC																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923469	9923469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs775819322		P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	257	703	0	ENST00000330684.3:c.1818G>T	p.Trp606Cys	p.W606C	ENST00000330684	NM_001134407.1	606	tgG/tgT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448604	89448604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	275	706	0	ENST00000336596.2:c.1568A>G	p.Lys523Arg	p.K523R	ENST00000336596	NM_005233.5	523	aAg/aGg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979523	2979523	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	103	695	0	ENST00000396946.4:c.724del	p.Glu242AsnfsTer10	p.E242Nfs*10	ENST00000396946	NM_032415.4	242	Gaa/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	74	540	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0031530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	122	341	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0031530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	122	341	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658468		P-0031530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	119	644	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0031530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	122	341	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797271	135797271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs118203410		P-0031530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	50	353	1	ENST00000298552.3:c.598G>A	p.Val200Ile	p.V200I	ENST00000298552	NM_001162426.1	200	Gtc/Atc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938558	44938559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACAT			P-0031530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	81	538	0	ENST00000377967.4:c.3110_3111insTCACA	p.Gln1037HisfsTer13	p.Q1037Hfs*13	ENST00000377967	NM_021140.2	1036	gca/gCACATca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0031812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	128	807	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0032092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	58	660	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	103	513	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	41	242	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1157879635		P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	101	601	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459531	50459531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	27	329	0	ENST00000331340.3:c.820C>T	p.Arg274Cys	p.R274C	ENST00000331340	NM_006060.4	274	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	210	790	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248711	212248711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	59	522	1	ENST00000342788.4:c.3556C>T	p.Pro1186Ser	p.P1186S	ENST00000342788	NM_005235.2	1186	Ccc/Tcc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911462	134911462	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs775938790		P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	35	549	0	ENST00000398015.3:c.1927A>G	p.Lys643Glu	p.K643E	ENST00000398015	NM_004441.4	643	Aag/Gag																																																																														
HGF	3082	MSKCC	GRCh37	7	81355326	81355326	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	27	375	0	ENST00000222390.5:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000222390	NM_000601.4	350	Cga/Tga																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226252155	226252155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	12	96	0	ENST00000366813.1:c.103G>T	p.Gly35Trp	p.G35W	ENST00000366813		35	Ggg/Tgg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371667	89371667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	66	577	0	ENST00000301030.4:c.173G>A	p.Arg58Gln	p.R58Q	ENST00000301030	NM_001256183.1	58	cGg/cAg																																																																														
LYN	4067	MSKCC	GRCh37	8	56866543	56866543	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0032258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	74	671	0	ENST00000519728.1:c.790G>C	p.Gly264Arg	p.G264R	ENST00000519728	NM_002350.3	264	Ggt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	163	385	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518301	204518301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1405649744		P-0032285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	101	477	1	ENST00000367182.3:c.964C>T	p.Arg322Cys	p.R322C	ENST00000367182	NM_001278516.1	322	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876660825		P-0032285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	265	551	0	ENST00000269305.4:c.569C>G	p.Pro190Arg	p.P190R	ENST00000269305	NM_001126112.2	190	cCt/cGt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348163	348163	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1436071949		P-0032285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	127	632	1	ENST00000262320.3:c.1343C>T	p.Pro448Leu	p.P448L	ENST00000262320	NM_003502.3	448	cCg/cTg																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62324219	62324221	+	inframe_deletion,NMD_transcript_variant	In_Frame_Del	DEL	AGG	AGG	-			P-0032285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	370	730	0	ENST00000482936.1:c.2716_2718del	p.Glu906del	p.E906del	ENST00000482936		905	cAGGag/cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs863224499		P-0032336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	552	513	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281281	15281281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776163983		P-0032336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	365	533	0	ENST00000263388.2:c.4975G>A	p.Val1659Ile	p.V1659I	ENST00000263388	NM_000435.2	1659	Gtc/Atc																																																																														
STK11	6794	MSKCC	GRCh37	19	1226539	1226539	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	235	523	1	ENST00000326873.7:c.1195C>T	p.Gln399Ter	p.Q399*	ENST00000326873	NM_000455.4	399	Cag/Tag																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289324	33289324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	74	340	2	ENST00000374542.5:c.228G>A	p.Met76Ile	p.M76I	ENST00000374542	NM_001141970.1	76	atG/atA																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455054	50455054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	225	286	0	ENST00000331340.3:c.601C>T	p.His201Tyr	p.H201Y	ENST00000331340	NM_006060.4	201	Cac/Tac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933376	39933376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	44	284	0	ENST00000378444.4:c.1223G>A	p.Gly408Glu	p.G408E	ENST00000378444	NM_001123385.1	408	gGg/gAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913351		P-0032342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	68	309	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228998	36228998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	219	601	1	ENST00000222270.7:c.7778G>A	p.Arg2593His	p.R2593H	ENST00000222270	NM_014727.1	2593	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	38	273	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099187	157099195	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGGCA	GCGGCGGCA	-	rs769480864		P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	54	284	0	ENST00000346085.5:c.133_141del	p.Ala45_Ala47del	p.A45_A47del	ENST00000346085	NM_020732.3	42	GCGGCGGCA/-																																																																														
CDH1	999	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587780784		P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	71	293	0	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32905152	32905152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	26	295	0	ENST00000380152.3:c.778G>C	p.Glu260Gln	p.E260Q	ENST00000380152		260	Gaa/Caa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819225	3819225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	86	444	0	ENST00000262367.5:c.3010G>C	p.Glu1004Gln	p.E1004Q	ENST00000262367	NM_004380.2	1004	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	144	620	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861892	57861892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376293205		P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	36	475	0	ENST00000228682.2:c.1193G>A	p.Arg398His	p.R398H	ENST00000228682	NM_005269.2	398	cGt/cAt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117313	115117315	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	26	243	0	ENST00000257566.3:c.859_861del	p.Asp287del	p.D287del	ENST00000257566	NM_016569.3	287	GAT/-																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812305	212812305	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	10	234	0	ENST00000342788.4:c.271C>G	p.Leu91Val	p.L91V	ENST00000342788	NM_005235.2	91	Ctt/Gtt																																																																														
PAK7	0	MSKCC	GRCh37	20	9561469	9561469	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	104	417	0	ENST00000353224.5:c.313C>G	p.Pro105Ala	p.P105A	ENST00000353224	NM_177990.2	105	Cca/Gca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2951863	2951863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	30	605	0	ENST00000396946.4:c.3087G>C	p.Lys1029Asn	p.K1029N	ENST00000396946	NM_032415.4	1029	aaG/aaC																																																																														
ATRX	546	MSKCC	GRCh37	X	76918872	76918875	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0033710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	119	591	0	ENST00000373344.5:c.4116_4119del	p.Lys1373Ter	p.K1373*	ENST00000373344	NM_000489.3	1372	agAAAG/ag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878863	151878863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	279	629	0	ENST00000262189.6:c.6082C>T	p.Arg2028Ter	p.R2028*	ENST00000262189	NM_170606.2	2028	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427837	49427895	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCTTTCCCCCACCTGATCCAGTTGTTTCTGGATCTTGCTCTGCTGCTCTGTAACCAGC	TGCTTTCCCCCACCTGATCCAGTTGTTTCTGGATCTTGCTCTGCTGCTCTGTAACCAGC	-			P-0034190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	98	703	0	ENST00000301067.7:c.10695_10740+13del		p.X3565_splice	ENST00000301067	NM_003482.3	3565																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023181	33023181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	68	606	0	ENST00000300177.4:c.290A>G	p.Gln97Arg	p.Q97R	ENST00000300177	NM_001191322.1	97	cAg/cGg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957901	1957901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	66	371	0	ENST00000382895.3:c.2867G>C	p.Arg956Thr	p.R956T	ENST00000382895	NM_133330.2	956	aGa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0034500-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			229	268	694	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168695	32168695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143103753		P-0034500-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			654	105	806	0	ENST00000375023.3:c.4228C>T	p.Arg1410Cys	p.R1410C	ENST00000375023	NM_004557.3	1410	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034500-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			132	190	371	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026137	71026138	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034500-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			308	188	395	0	ENST00000318789.4:c.1484dup	p.Thr496HisfsTer21	p.T496Hfs*21	ENST00000318789	NM_032682.5	495	ttc/ttTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672294	30672294	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034500-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			710	127	822	0	ENST00000376406.3:c.4666A>G	p.Thr1556Ala	p.T1556A	ENST00000376406	NM_014641.2	1556	Act/Gct																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772893	135772894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0034500-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			282	232	631	0	ENST00000298552.3:c.2728_2729dup	p.Leu910PhefsTer22	p.L910Ffs*22	ENST00000298552	NM_001162426.1	910	ttg/ttTTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	53	388	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	84	495	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986928	36986928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	88	392	2	ENST00000354822.5:c.761C>T	p.Ala254Val	p.A254V	ENST00000354822	NM_001079668.2	254	gCg/gTg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061202	38061203	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCGGCGCAAGTA			P-0034539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	23	299	0	ENST00000250448.2:c.775_786dup	p.Tyr259_Arg262dup	p.Y259_R262dup	ENST00000250448	NM_004496.3	259	-/TACTTGCGCCGC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	267	360	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	119	342	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	21	528	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	19	335	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589610	67589612	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	73	176	0	ENST00000274335.5:c.1376_1378del	p.Lys459del	p.K459del	ENST00000274335		458	gAAAaa/gaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	78	332	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699360	47699360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	100	323	0	ENST00000347630.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000347630	NM_001007230.1	50	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	177	399	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	110	338	0	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	110	373	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	107	366	1	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046289	128046289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746827111		P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	121	363	1	ENST00000285398.2:c.974G>A	p.Arg325Gln	p.R325Q	ENST00000285398	NM_000122.1	325	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	70	325	1	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	165	471	0	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663356	67663356	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	105	277	1	ENST00000264010.4:c.1760del	p.Asn587MetfsTer44	p.N587Mfs*44	ENST00000264010	NM_006565.3	586	gAa/ga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	127	497	0	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272237	15272238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	94	495	0	ENST00000263388.2:c.6201dup	p.Gly2068ArgfsTer27	p.G2068Rfs*27	ENST00000263388	NM_000435.2	2067	-/C																																																																														
NF1	4763	MSKCC	GRCh37	17	29683557	29683558	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	72	197	0	ENST00000358273.4:c.7701dup	p.Lys2568GlnfsTer9	p.K2568Qfs*9	ENST00000358273	NM_001042492.2	2565	-/C																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268792	98268793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	146	377	0	ENST00000331920.6:c.290dup	p.Asn97LysfsTer43	p.N97Kfs*43	ENST00000331920	NM_000264.3	97	aac/aaAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211862	36211862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	147	543	0	ENST00000222270.7:c.1613G>A	p.Arg538His	p.R538H	ENST00000222270	NM_014727.1	538	cGt/cAt																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2489228	2489228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	135	497	0	ENST00000355716.4:c.133G>A	p.Asp45Asn	p.D45N	ENST00000355716	NM_003820.2	45	Gac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101255	27101255	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	95	424	0	ENST00000324856.7:c.4537del	p.Ser1513AlafsTer14	p.S1513Afs*14	ENST00000324856	NM_006015.4	1513	Agc/gc																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205520	61205520	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	133	443	0	ENST00000301761.2:c.305T>C	p.Leu102Pro	p.L102P	ENST00000301761	NM_017841.2	102	cTg/cCg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514460	103514460	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756778477		P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	52	211	0	ENST00000355739.4:c.961G>A	p.Val321Met	p.V321M	ENST00000355739	NM_000123.3	321	Gtg/Atg																																																																														
BLM	641	MSKCC	GRCh37	15	91354517	91354517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	105	268	0	ENST00000355112.3:c.3957A>G	p.Ile1319Met	p.I1319M	ENST00000355112	NM_000057.2	1319	atA/atG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831054	72831054	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	116	379	1	ENST00000268489.5:c.5527C>T	p.Gln1843Ter	p.Q1843*	ENST00000268489	NM_006885.3	1843	Cag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097116	11097116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	76	507	0	ENST00000344626.4:c.607G>A	p.Ala203Thr	p.A203T	ENST00000344626	NM_003072.3	203	Gcg/Acg																																																																														
ERF	2077	MSKCC	GRCh37	19	42754705	42754705	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1381524812		P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	13	173	1	ENST00000222329.4:c.35C>T	p.Pro12Leu	p.P12L	ENST00000222329	NM_006494.2	12	cCg/cTg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010573	48010574	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	96	427	0	ENST00000234420.5:c.203dup	p.Ala69GlyfsTer21	p.A69Gfs*21	ENST00000234420	NM_000179.2	67	-/A																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182126	99182126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	69	281	0	ENST00000074304.5:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000074304	NM_001134224.1	731	Gac/Aac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591082	67591096	+	inframe_deletion	In_Frame_Del	DEL	ATTGACAAACGTATG	ATTGACAAACGTATG	-			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	81	208	0	ENST00000274335.5:c.1676_1690del	p.Ile559_Met563del	p.I559_M563del	ENST00000274335		559	ATTGACAAACGTATG/-																																																																														
MSH3	4437	MSKCC	GRCh37	5	80109499	80109500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	130	419	0	ENST00000265081.6:c.2754dup	p.Gly919TrpfsTer29	p.G919Wfs*29	ENST00000265081	NM_002439.4	918	att/aTtt																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805626	32805626	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	125	567	1	ENST00000374899.4:c.385C>T	p.Gln129Ter	p.Q129*	ENST00000374899	NM_018833.2	129	Cag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117679074	117679074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770388201		P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	122	390	0	ENST00000368508.3:c.3747G>A	p.Met1249Ile	p.M1249I	ENST00000368508	NM_002944.2	1249	atG/atA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106524706	106524709	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	52	252	0	ENST00000359195.3:c.2869_2872del	p.Thr957GlufsTer30	p.T957Efs*30	ENST00000359195	NM_002649.2	956	gAGACa/ga																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370972	55370972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	145	461	0	ENST00000297316.4:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000297316	NM_022454.3	92	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0036358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	36	593	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NPM1	4869	MSKCC	GRCh37	5	170819735	170819735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	30	88	0	ENST00000296930.5:c.374C>T	p.Ser125Leu	p.S125L	ENST00000296930	NM_002520.6	125	tCa/tTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720828	89720828	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	61	309	0	ENST00000371953.3:c.979A>T	p.Lys327Ter	p.K327*	ENST00000371953	NM_000314.4	327	Aaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0036358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	21	660	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271780	15271780	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	60	722	0	ENST00000263388.2:c.6659A>G	p.Glu2220Gly	p.E2220G	ENST00000263388	NM_000435.2	2220	gAg/gGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	188	664	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0037030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	169	640	1	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0037030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	63	384	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372862828		P-0037030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	296	656	1	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710672	114710672	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184454375		P-0037030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	69	398	0	ENST00000543371.1:c.157G>A	p.Glu53Lys	p.E53K	ENST00000543371	NM_001198531.1	53	Gaa/Aaa																																																																														
AR	367	MSKCC	GRCh37	X	66863125	66863125	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs139524801		P-0037030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	130	692	2	ENST00000374690.3:c.1644G>T	p.Leu548Phe	p.L548F	ENST00000374690	NM_000044.3	548	ttG/ttT																																																																														
APC	324	MSKCC	GRCh37	5	112174010	112174010	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	29	399	0	ENST00000257430.4:c.2721del	p.Ser908LeufsTer8	p.S908Lfs*8	ENST00000257430	NM_000038.5	907	Ggg/gg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11984671	11984672	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0037030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	54	288	0	ENST00000353533.5:c.224_225del		p.X75_splice	ENST00000353533	NM_003010.3	75																																																																															
NSD1	64324	MSKCC	GRCh37	5	176636888	176636888	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	62	554	2	ENST00000439151.2:c.1488A>T	p.Lys496Asn	p.K496N	ENST00000439151	NM_022455.4	496	aaA/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0037072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	391	621	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121846	2121846	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1338802781		P-0037072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	131	583	0	ENST00000219476.3:c.2008C>T	p.Pro670Ser	p.P670S	ENST00000219476	NM_000548.3	670	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0037087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	201	552	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353989	15353989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	12	164	0	ENST00000263377.2:c.2891C>G	p.Pro964Arg	p.P964R	ENST00000263377	NM_058243.2	964	cCc/cGc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200151	128200187	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCTGTTAACCTAGAGGCAACCACCAGTTTTCAGAG	GGCCTGTTAACCTAGAGGCAACCACCAGTTTTCAGAG	-			P-0037087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	44	489	0	ENST00000341105.2:c.1144-26_1154del		p.X382_splice	ENST00000341105	NM_032638.4	382																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151900033	151900033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	75	345	0	ENST00000262189.6:c.4078C>T	p.Pro1360Ser	p.P1360S	ENST00000262189	NM_170606.2	1360	Cct/Tct																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519874		P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	56	393	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	232	525	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3790455	3790455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587783490		P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	358	414	0	ENST00000262367.5:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000262367	NM_004380.2	1360	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087896	27087920	+	frameshift_variant	Frame_Shift_Del	DEL	CACCCAGTGGCCAGTCGGACAGCAT	CACCCAGTGGCCAGTCGGACAGCAT	-			P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	154	477	0	ENST00000324856.7:c.2185_2209del	p.Pro729CysfsTer5	p.P729Cfs*5	ENST00000324856	NM_006015.4	728	cCACCCAGTGGCCAGTCGGACAGCATc/cc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544167	18544167	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	49	242	0	ENST00000266497.5:c.1984C>T	p.Gln662Ter	p.Q662*	ENST00000266497		662	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094470	27094470	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	103	433	0	ENST00000324856.7:c.3178G>T	p.Glu1060Ter	p.E1060*	ENST00000324856	NM_006015.4	1060	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023555	27023555	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	38	462	0	ENST00000324856.7:c.661del	p.Ala221ProfsTer11	p.A221Pfs*11	ENST00000324856	NM_006015.4	221	Gcc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092967	27092968	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	25	190	0	ENST00000324856.7:c.2899_2900dup	p.Met967IlefsTer2	p.M967Ifs*2	ENST00000324856	NM_006015.4	966	-/AT																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63759909	63759909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	26	207	0	ENST00000279873.7:c.562C>T	p.Arg188Cys	p.R188C	ENST00000279873	NM_032199.2	188	Cgc/Tgc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497678	125497678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	188	315	1	ENST00000428830.2:c.242A>G	p.Tyr81Cys	p.Y81C	ENST00000428830	NM_001114121.2	81	tAt/tGt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26828870	26828870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	73	246	0	ENST00000381527.3:c.92C>T	p.Thr31Ile	p.T31I	ENST00000381527	NM_001260.1	31	aCt/aTt																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137527404	137527404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	42	261	0	ENST00000367739.4:c.242C>T	p.Ser81Phe	p.S81F	ENST00000367739	NM_000416.2	81	tCt/tTt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468322	50468322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	112	253	1	ENST00000331340.3:c.1557C>A	p.Ser519Arg	p.S519R	ENST00000331340	NM_006060.4	519	agC/agA																																																																														
RAD21	5885	MSKCC	GRCh37	8	117861253	117861254	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0037113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	152	382	0	ENST00000297338.2:c.1635_1636del	p.Gly547ArgfsTer26	p.G547Rfs*26	ENST00000297338	NM_006265.2	545	tcAGgg/tcgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201744589		P-0037126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	220	680	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	244	571	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427984	49427984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	30	741	0	ENST00000301067.7:c.10606C>T	p.Arg3536Cys	p.R3536C	ENST00000301067	NM_003482.3	3536	Cgc/Tgc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026157	71026157	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	230	513	0	ENST00000318789.4:c.1465A>G	p.Asn489Asp	p.N489D	ENST00000318789	NM_032682.5	489	Aat/Gat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	337	616	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PGR	5241	MSKCC	GRCh37	11	100999749	100999761	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCGCCCGCCA	GGGCCGCCCGCCA	CC			P-0037160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	231	578	2	ENST00000325455.5:c.41_53delinsGG	p.Val14GlyfsTer30	p.V14Gfs*30	ENST00000325455	NM_001202474.3	14	gTGGCGGGCGGCCCg/gGGg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41199682	41199682	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397509284		P-0037160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	276	535	0	ENST00000357654.3:c.5445G>A	p.Trp1815Ter	p.W1815*	ENST00000357654	NM_007294.3	1815	tgG/tgA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38967502	38967502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	82	309	1	ENST00000357387.3:c.1088G>T	p.Arg363Met	p.R363M	ENST00000357387	NM_152756.3	363	aGg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	212	647	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	74	374	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946435	2946435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751651073		P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	476	632	0	ENST00000396946.4:c.3302G>A	p.Arg1101His	p.R1101H	ENST00000396946	NM_032415.4	1101	cGc/cAc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134512	30134512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	29	243	0	ENST00000263025.4:c.19C>T	p.Gln7Ter	p.Q7*	ENST00000263025	NM_002746.2	7	Cag/Tag																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88651956	88651957	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TT			P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	58	374	0	ENST00000372037.3:c.303_304delinsTT	p.Met101_Lys102delinsIleTer	p.M101_K102delinsI*	ENST00000372037	NM_004329.2	101	atGAaa/atTTaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593391	48593391	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	59	304	0	ENST00000342988.3:c.1142T>C	p.Leu381Ser	p.L381S	ENST00000342988	NM_005359.5	381	tTg/tCg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004945	150004945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	145	443	0	ENST00000253339.5:c.1280C>G	p.Pro427Arg	p.P427R	ENST00000253339		427	cCt/cGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	63	466	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	78	711	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	45	438	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	33	355	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	79	670	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045772	143045772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145209328		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	66	658	0	ENST00000262992.4:c.1862C>T	p.Thr621Met	p.T621M	ENST00000262992	NM_001101669.1	621	aCg/aTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	113	939	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	99	548	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	97	844	6	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484611	57484611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	106	769	0	ENST00000371085.3:c.695G>A	p.Arg232His	p.R232H	ENST00000371085	NM_000516.4	232	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	73	680	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587776934		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	83	751	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332273	70332273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	47	441	1	ENST00000373644.4:c.184del	p.Thr62GlnfsTer13	p.T62Qfs*13	ENST00000373644	NM_030625.2	60	Aaa/aa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456467	99456467	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56248469		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	56	539	0	ENST00000268035.6:c.1784G>A	p.Arg595His	p.R595H	ENST00000268035	NM_000875.3	595	cGt/cAt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289196	33289196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771284147		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	100	624	0	ENST00000374542.5:c.356G>A	p.Arg119Gln	p.R119Q	ENST00000374542	NM_001141970.1	119	cGg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	108	856	3	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
PARK2	0	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	105	686	3	ENST00000366898.1:c.1283del	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																														
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	36	508	1	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																																																														
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	72	657	1	ENST00000355112.3:c.3651del	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	173	712	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231610	5231611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	19	178	0	ENST00000357368.4:c.1865dup	p.Gln623SerfsTer4	p.Q623Sfs*4	ENST00000357368	NM_002850.3	622	cct/ccCt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	89	628	2	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259043	16259043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	75	679	0	ENST00000375759.3:c.6313del	p.Ala2105LeufsTer33	p.A2105Lfs*33	ENST00000375759	NM_015001.2	2103	aGg/ag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431545	49431545	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	99	852	0	ENST00000301067.7:c.9594del	p.Ser3199AlafsTer3	p.S3199Afs*3	ENST00000301067	NM_003482.3	3198	ccC/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	134	906	0	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166821	32166821	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1041758474		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	112	957	1	ENST00000375023.3:c.4417C>T	p.Arg1473Cys	p.R1473C	ENST00000375023	NM_004557.3	1473	Cgt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284970	15284970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	126	968	1	ENST00000263388.2:c.4645G>A	p.Ala1549Thr	p.A1549T	ENST00000263388	NM_000435.2	1549	Gcg/Acg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244148	153244148	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	89	717	0	ENST00000281708.4:c.2009del	p.Gly670GlufsTer37	p.G670Efs*37	ENST00000281708	NM_033632.3	670	gGa/ga																																																																														
SPOP	8405	MSKCC	GRCh37	17	47685288	47685288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	56	500	0	ENST00000347630.2:c.662G>A	p.Arg221His	p.R221H	ENST00000347630	NM_001007230.1	221	cGt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214714	36214714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	86	646	0	ENST00000222270.7:c.3145del	p.Ala1049ArgfsTer133	p.A1049Rfs*133	ENST00000222270	NM_014727.1	1047	cGg/cg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793290	242793291	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	126	1109	0	ENST00000334409.5:c.786dup	p.Ala263ArgfsTer7	p.A263Rfs*7	ENST00000334409	NM_005018.2	262	-/C																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105737	27105737	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	57	454	0	ENST00000324856.7:c.5351del	p.Asn1784MetfsTer5	p.N1784Mfs*5	ENST00000324856	NM_006015.4	1783	gAa/ga																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724362	112724362	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	99	681	1	ENST00000369452.4:c.252del	p.Lys84AsnfsTer7	p.K84Nfs*7	ENST00000369452	NM_007373.3	82	agA/ag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416191	416191	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	77	556	0	ENST00000399788.2:c.3995del	p.Pro1332LeufsTer26	p.P1332Lfs*26	ENST00000399788	NM_001042603.1	1332	cCt/ct																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870838	12870838	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	50	249	0	ENST00000228872.4:c.65A>C	p.Glu22Ala	p.E22A	ENST00000228872	NM_004064.3	22	gAg/gCg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658322	18658322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	94	717	0	ENST00000266497.5:c.3127A>G	p.Lys1043Glu	p.K1043E	ENST00000266497		1043	Aag/Gag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244983	46244983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	95	775	0	ENST00000334344.6:c.3077T>C	p.Val1026Ala	p.V1026A	ENST00000334344	NM_152641.2	1026	gTa/gCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426664	49426664	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	47	507	0	ENST00000301067.7:c.11824C>T	p.Gln3942Ter	p.Q3942*	ENST00000301067	NM_003482.3	3942	Caa/Taa																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484319	50484319	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150612896		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	99	823	0	ENST00000394963.4:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000394963	NM_003076.4	360	cGg/cAg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349480	73349480	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1048864282		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	65	586	0	ENST00000377767.4:c.856G>A	p.Ala286Thr	p.A286T	ENST00000377767	NM_014953.3	286	Gct/Act																																																																														
NUP93	9688	MSKCC	GRCh37	16	56792460	56792460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	71	618	0	ENST00000308159.5:c.190C>A	p.Leu64Ile	p.L64I	ENST00000308159	NM_014669.4	64	Ctc/Atc																																																																														
CDH1	999	MSKCC	GRCh37	16	68771353	68771353	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	71	489	0	ENST00000261769.5:c.35T>G	p.Leu12Arg	p.L12R	ENST00000261769	NM_004360.3	12	cTg/cGg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883239	37883239	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377602610		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	125	846	5	ENST00000269571.5:c.3142C>T	p.Arg1048Cys	p.R1048C	ENST00000269571		1048	Cgc/Tgc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120399	70120400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	163	1161	0	ENST00000245479.2:c.1402dup	p.Tyr468LeufsTer110	p.Y468Lfs*110	ENST00000245479	NM_000346.3	467	-/T																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732431	74732431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	66	407	0	ENST00000359995.5:c.478A>G	p.Thr160Ala	p.T160A	ENST00000359995	NM_001195427.1	160	Acc/Gcc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222076	2222076	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	151	1121	0	ENST00000398665.3:c.2908A>G	p.Ser970Gly	p.S970G	ENST00000398665	NM_032482.2	970	Agc/Ggc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10254608	10254608	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs760683699		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	106	772	0	ENST00000340748.4:c.2902C>A	p.Leu968Met	p.L968M	ENST00000340748		968	Ctg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11169557	11169557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	92	615	0	ENST00000344626.4:c.4627G>T	p.Gly1543Cys	p.G1543C	ENST00000344626	NM_003072.3	1543	Ggc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	73	889	0	ENST00000263388.2:c.5403_5404dup	p.Ala1802GlyfsTer24	p.A1802Gfs*24	ENST00000263388	NM_000435.2	1802	gct/gGGct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211494	36211495	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	64	672	2	ENST00000222270.7:c.1249dup	p.Leu417ProfsTer133	p.L417Pfs*133	ENST00000222270	NM_014727.1	415	-/C																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220945	36220945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	52	502	0	ENST00000222270.7:c.4995G>A	p.Met1665Ile	p.M1665I	ENST00000222270	NM_014727.1	1665	atG/atA																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213183	39213185	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	107	1181	0	ENST00000402219.2:c.3782_3784del	p.Pro1261del	p.P1261del	ENST00000402219	NM_005633.3	1261	cCTCaa/caa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39294858	39294858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	62	460	0	ENST00000402219.2:c.124G>T	p.Asp42Tyr	p.D42Y	ENST00000402219	NM_005633.3	42	Gat/Tat																																																																														
IDH1	3417	MSKCC	GRCh37	2	209116254	209116254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	53	361	0	ENST00000345146.2:c.22G>T	p.Gly8Cys	p.G8C	ENST00000345146	NM_005896.2	8	Ggt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484753	57484753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	85	732	0	ENST00000371085.3:c.733A>G	p.Ile245Val	p.I245V	ENST00000371085	NM_000516.4	245	Atc/Gtc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163157	47163157	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1211480425		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	63	552	0	ENST00000409792.3:c.2969T>C	p.Val990Ala	p.V990A	ENST00000409792	NM_014159.6	990	gTg/gCg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090585	71090585	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	88	657	0	ENST00000318789.4:c.763A>C	p.Thr255Pro	p.T255P	ENST00000318789	NM_032682.5	255	Acc/Ccc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902779	1902779	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs140401180		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	88	759	2	ENST00000382895.3:c.398T>C	p.Met133Thr	p.M133T	ENST00000382895	NM_133330.2	133	aTg/aCg																																																																														
KDR	3791	MSKCC	GRCh37	4	55981508	55981509	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	71	659	0	ENST00000263923.4:c.428dup	p.Asn143LysfsTer31	p.N143Kfs*31	ENST00000263923	NM_002253.2	143	aac/aaAc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178659	56178659	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	34	305	0	ENST00000399503.3:c.3635del	p.Asn1212MetfsTer33	p.N1212Mfs*33	ENST00000399503	NM_005921.1	1211	gAa/ga																																																																														
APC	324	MSKCC	GRCh37	5	112137003	112137003	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772806807		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	61	500	0	ENST00000257430.4:c.757G>A	p.Gly253Ser	p.G253S	ENST00000257430	NM_000038.5	253	Ggc/Agc																																																																														
STK19	8859	MSKCC	GRCh37	6	31948472	31948472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745355598		P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	46	530	0	ENST00000375331.2:c.943C>T	p.Arg315Trp	p.R315W	ENST00000375331	NM_004197.1	315	Cgg/Tgg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0037227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	86	940	0	ENST00000481739.1:c.330_331dup	p.Leu111ProfsTer58	p.L111Pfs*58	ENST00000481739	NM_002957.4	108	-/CC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	317	464	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	296	592	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913302		P-0037253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	145	257	0	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799162	88799162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	72	423	1	ENST00000360948.2:c.223G>A	p.Asp75Asn	p.D75N	ENST00000360948	NM_001012338.2	75	Gac/Aac																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0037257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	141	315	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0037257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	230	452	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786201059		P-0037257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	291	578	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984423	201984424	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	177	479	0	ENST00000359651.3:c.1090dup	p.Glu364GlyfsTer107	p.E364Gfs*107	ENST00000359651		363	gag/gaGg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004217	150004217	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1431439182		P-0037263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	148	394	2	ENST00000253339.5:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000253339		670	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0037263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	241	501	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438364	110438437	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CCGGCCCGGGCGGCCCGTGCCGCGGCGGGCTCGCCATCGCGGGCGCTTCAGGCCGCGCGGCCCGGGCCCGGCGC	CCGGCCCGGGCGGCCCGTGCCGCGGCGGGCTCGCCATCGCGGGCGCTTCAGGCCGCGCGGCCCGGGCCCGGCGC	-			P-0037263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	59	83	0	ENST00000375856.3:c.-37_37del		p.*13*	ENST00000375856	NM_003749.2																																																																																
CARD11	84433	MSKCC	GRCh37	7	2978367	2978367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	91	618	0	ENST00000396946.4:c.963C>A	p.Asn321Lys	p.N321K	ENST00000396946	NM_032415.4	321	aaC/aaA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061229	38061237	+	inframe_deletion	In_Frame_Del	DEL	ACATGTTGC	ACATGTTGC	-			P-0037277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	195	596	0	ENST00000250448.2:c.752_760del	p.Gly251_Phe254delinsVal	p.G251_F254delinsV	ENST00000250448	NM_004496.3	251	gGCAACATGTtc/gtc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769408892		P-0037283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	36	585	0	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	239	701	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	198	762	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1415146710		P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	180	622	0	ENST00000324856.7:c.1650dup	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	80	334	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184589	11184589	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	202	729	0	ENST00000361445.4:c.6628G>C	p.Ala2210Pro	p.A2210P	ENST00000361445	NM_004958.3	2210	Gcc/Ccc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730904	40730904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770182876		P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	128	649	1	ENST00000373198.4:c.3631G>A	p.Glu1211Lys	p.E1211K	ENST00000373198	NM_133170.3	1211	Gag/Aag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86665709	86665709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	115	348	0	ENST00000274376.6:c.1690C>A	p.Gln564Lys	p.Q564K	ENST00000274376	NM_002890.2	564	Caa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	117	327	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0037366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	305	475	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120509086	120509086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	174	317	0	ENST00000256646.2:c.1480G>C	p.Glu494Gln	p.E494Q	ENST00000256646	NM_024408.3	494	Gaa/Caa																																																																														
RB1	5925	MSKCC	GRCh37	13	48923156	48923156	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	116	264	0	ENST00000267163.4:c.606del	p.Glu204LysfsTer10	p.E204Kfs*10	ENST00000267163	NM_000321.2	202	Aaa/aa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0037380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	251	464	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306689	41306689	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868376470		P-0037380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	230	476	0	ENST00000373198.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000373198	NM_133170.3	324	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467675	50467675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759124417		P-0037380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	18	316	0	ENST00000331340.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000331340	NM_006060.4	304	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468158	50468158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	152	390	0	ENST00000331340.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331340	NM_006060.4	465	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031970	10031970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	207	450	0	ENST00000330684.3:c.853G>A	p.Asp285Asn	p.D285N	ENST00000330684	NM_001134407.1	285	Gac/Aac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389318	8389318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	60	437	0	ENST00000356435.5:c.4300G>A	p.Glu1434Lys	p.E1434K	ENST00000356435		1434	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	109	179	0				ENST00000310581	NM_198253.2																																																																																
TET1	80312	MSKCC	GRCh37	10	70406233	70406233	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs781235061		P-0037380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	40	403	0	ENST00000373644.4:c.3747A>C	p.Glu1249Asp	p.E1249D	ENST00000373644	NM_030625.2	1249	gaA/gaC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425665	49425666	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0037380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	174	500	2	ENST00000301067.7:c.12822_12823delinsTT	p.Gln4275Ter	p.Q4275*	ENST00000301067	NM_003482.3	4274	ctCCag/ctTTag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290246	15290247	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	158	595	1	ENST00000263388.2:c.3388_3389delinsTT	p.Pro1130Phe	p.P1130F	ENST00000263388	NM_000435.2	1130	CCc/TTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222832	36222832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	344	672	3	ENST00000222270.7:c.5461C>T	p.Pro1821Ser	p.P1821S	ENST00000222270	NM_014727.1	1821	Cca/Tca																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202176	138202176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763346708		P-0037380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	157	272	0	ENST00000237289.4:c.2093C>T	p.Ser698Leu	p.S698L	ENST00000237289	NM_001270507.1	698	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	65	385	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750600586		P-0037400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	46	746	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	42	347	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	42	347	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	42	347	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955109	17955109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140784576		P-0037400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	46	677	2	ENST00000458235.1:c.118C>T	p.Arg40Cys	p.R40C	ENST00000458235	NM_000215.3	40	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0037400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	34	404	0	ENST00000304494.5:c.150+1G>C		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9775782	9775782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767750196		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	42	679	0	ENST00000377346.4:c.325G>A	p.Val109Met	p.V109M	ENST00000377346	NM_005026.3	109	Gtg/Atg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256679	16256679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	24	469	0	ENST00000375759.3:c.3944G>A	p.Ser1315Asn	p.S1315N	ENST00000375759	NM_015001.2	1315	aGc/aAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	86	501	2	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100833	27100834	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	32	456	0	ENST00000324856.7:c.4117dup	p.Met1373AsnfsTer72	p.M1373Nfs*72	ENST00000324856	NM_006015.4	1372	cca/ccAa																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599234	28599234	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	58	799	0	ENST00000253063.3:c.685del	p.Gln229ArgfsTer18	p.Q229Rfs*18	ENST00000253063	NM_031459.4	227	gCc/gc																																																																														
STK40	83931	MSKCC	GRCh37	1	36807433	36807433	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	47	713	2	ENST00000373129.3:c.1231C>T	p.Arg411Ter	p.R411*	ENST00000373129	NM_032017.1	411	Cga/Tga																																																																														
STK40	83931	MSKCC	GRCh37	1	36809504	36809504	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1412240338		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	52	693	0	ENST00000373129.3:c.961G>A	p.Ala321Thr	p.A321T	ENST00000373129	NM_032017.1	321	Gcc/Acc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724526	162724526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	87	512	0	ENST00000367921.3:c.298G>A	p.Val100Met	p.V100M	ENST00000367921	NM_006182.2	100	Gtg/Atg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740213	162740213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	24	415	0	ENST00000367921.3:c.1415A>G	p.Asp472Gly	p.D472G	ENST00000367921	NM_006182.2	472	gAt/gGt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980293	201980293	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	48	698	1	ENST00000359651.3:c.33del	p.Phe11LeufsTer32	p.F11Lfs*32	ENST00000359651		10	aTt/at																																																																														
RET	5979	MSKCC	GRCh37	10	43600556	43600556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	44	712	0	ENST00000355710.3:c.782C>T	p.Thr261Ile	p.T261I	ENST00000355710	NM_020975.4	261	aCc/aTc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104268987	104268987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	144	640	1	ENST00000369902.3:c.244G>A	p.Ala82Thr	p.A82T	ENST00000369902	NM_016169.3	82	Gct/Act																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	103	332	11	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	170	866	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	129	698	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	118	597	1	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	66	452	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	51	450	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	47	684	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856655	111856655	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1014425313		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	35	318	0	ENST00000341259.2:c.706G>A	p.Val236Met	p.V236M	ENST00000341259	NM_005475.2	236	Gtg/Atg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115111992	115111992	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	56	533	0	ENST00000257566.3:c.1748A>C	p.Gln583Pro	p.Q583P	ENST00000257566	NM_016569.3	583	cAg/cCg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	160	619	6	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
POLE	5426	MSKCC	GRCh37	12	133201517	133201517	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	58	666	0	ENST00000320574.5:c.6721G>T	p.Asp2241Tyr	p.D2241Y	ENST00000320574	NM_006231.2	2241	Gac/Tac																																																																														
CDK8	1024	MSKCC	GRCh37	13	26828867	26828867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	49	323	0	ENST00000381527.3:c.89G>A	p.Gly30Asp	p.G30D	ENST00000381527	NM_001260.1	30	gGc/gAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48881488	48881489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	224	263	0	ENST00000267163.4:c.219_220dup	p.Ala74GlufsTer4	p.A74Efs*4	ENST00000267163	NM_000321.2	70	-/AG																																																																														
RB1	5925	MSKCC	GRCh37	13	48951110	48951110	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	27	275	0	ENST00000267163.4:c.1272C>A	p.Tyr424Ter	p.Y424*	ENST00000267163	NM_000321.2	424	taC/taA																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434746	110434746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	50	708	0	ENST00000375856.3:c.3655C>T	p.Pro1219Ser	p.P1219S	ENST00000375856	NM_003749.2	1219	Ccg/Tcg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986896	36986896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	79	437	0	ENST00000354822.5:c.793G>T	p.Gly265Cys	p.G265C	ENST00000354822	NM_001079668.2	265	Ggc/Tgc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	29	432	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	81	435	0	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																														
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	68	443	0	ENST00000355112.3:c.3651del	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99451928	99451928	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	66	282	0	ENST00000268035.6:c.1262A>G	p.Tyr421Cys	p.Y421C	ENST00000268035	NM_000875.3	421	tAc/tGc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639789	3639789	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373107728		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	43	805	0	ENST00000294008.3:c.3850G>A	p.Val1284Met	p.V1284M	ENST00000294008	NM_032444.2	1284	Gtg/Atg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641093	3641093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	67	1079	0	ENST00000294008.3:c.2546C>T	p.Ala849Val	p.A849V	ENST00000294008	NM_032444.2	849	gCa/gTa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs774532876		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	48	792	1	ENST00000294008.3:c.1406del	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779057	3779057	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	53	549	0	ENST00000262367.5:c.5991del	p.Val1998Ter	p.V1998*	ENST00000262367	NM_004380.2	1997	ccC/cc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	50	449	0	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																														
CDH1	999	MSKCC	GRCh37	16	68842405	68842405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	51	518	0	ENST00000261769.5:c.466T>C	p.Trp156Arg	p.W156R	ENST00000261769	NM_004360.3	156	Tgg/Cgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	19	335	4	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827213	72827213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	36	492	0	ENST00000268489.5:c.9368C>A	p.Pro3123His	p.P3123H	ENST00000268489	NM_006885.3	3123	cCt/cAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827414	72827414	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs374608671		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	54	755	0	ENST00000268489.5:c.9167T>C	p.Ile3056Thr	p.I3056T	ENST00000268489	NM_006885.3	3056	aTt/aCt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953271	81953271	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	20	231	0	ENST00000359376.3:c.2235+2T>C		p.X745_splice	ENST00000359376	NM_002661.3	745																																																																															
FANCA	2175	MSKCC	GRCh37	16	89845372	89845372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	42	581	0	ENST00000389301.3:c.1755del	p.Ala586ProfsTer19	p.A586Pfs*19	ENST00000389301	NM_000135.2	585	ccC/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	33	597	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15950396	15950396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201721277		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	73	509	0	ENST00000268712.3:c.6548G>A	p.Arg2183His	p.R2183H	ENST00000268712	NM_006311.3	2183	cGc/cAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15995345	15995345	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs367874483		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	21	419	0	ENST00000268712.3:c.2848A>G	p.Ile950Val	p.I950V	ENST00000268712	NM_006311.3	950	Att/Gtt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	72	463	0	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
FLCN	201163	MSKCC	GRCh37	17	17129540	17129540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	145	710	1	ENST00000285071.4:c.346del	p.Gln116SerfsTer14	p.Q116Sfs*14	ENST00000285071	NM_144997.5	116	Cag/ag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40476850	40476850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	39	483	1	ENST00000264657.5:c.1479del	p.Phe493LeufsTer16	p.F493Lfs*16	ENST00000264657	NM_139276.2	493	ttT/tt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63537572	63537572	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	267	398	0	ENST00000307078.5:c.1059+1G>A		p.X353_splice	ENST00000307078	NM_004655.3	353																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	184	505	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619172	1619172	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374199541		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	89	776	0	ENST00000344749.5:c.1388C>T	p.Ala463Val	p.A463V	ENST00000344749	NM_001136139.2	463	gCg/gTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2193700	2193700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	38	621	1	ENST00000398665.3:c.506T>C	p.Val169Ala	p.V169A	ENST00000398665	NM_032482.2	169	gTc/gCc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs766222935		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	52	586	3	ENST00000357368.4:c.3072dup	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296322	15296322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772994625		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	117	698	2	ENST00000263388.2:c.2120G>A	p.Gly707Asp	p.G707D	ENST00000263388	NM_000435.2	707	gGc/gAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296373	15296373	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1381914938		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	41	832	0	ENST00000263388.2:c.2069C>A	p.Pro690Gln	p.P690Q	ENST00000263388	NM_000435.2	690	cCa/cAa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18958551	18958551	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	48	519	1	ENST00000262803.5:c.372-2A>G		p.X124_splice	ENST00000262803	NM_002911.3	124																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	37	676	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	113	727	4	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211288	36211288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	55	865	0	ENST00000222270.7:c.1039G>A	p.Gly347Arg	p.G347R	ENST00000222270	NM_014727.1	347	Gga/Aga																																																																														
ERF	2077	MSKCC	GRCh37	19	42752804	42752804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1286494808		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	155	760	0	ENST00000222329.4:c.1460G>A	p.Arg487His	p.R487H	ENST00000222329	NM_006494.2	487	cGc/cAc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753594	42753594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1320701373		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	31	620	2	ENST00000222329.4:c.670C>T	p.Arg224Cys	p.R224C	ENST00000222329	NM_006494.2	224	Cgc/Tgc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791355	42791355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	29	604	1	ENST00000575354.2:c.415C>T	p.Arg139Trp	p.R139W	ENST00000575354	NM_015125.3	139	Cgg/Tgg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965688	25965689	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	138	695	0	ENST00000435504.4:c.3517_3518del	p.Ser1173Ter	p.S1173*	ENST00000435504		1173	AGt/t																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222519	39222520	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	30	502	0	ENST00000402219.2:c.3090dup	p.Tyr1031IlefsTer2	p.Y1031Ifs*2	ENST00000402219	NM_005633.3	1030	-/A																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010482	48010482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	73	456	0	ENST00000234420.5:c.114del	p.Ala40ProfsTer41	p.A40Pfs*41	ENST00000234420	NM_000179.2	37	gCc/gc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	57	462	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170887	99170887	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	102	601	0	ENST00000074304.5:c.1516A>G	p.Met506Val	p.M506V	ENST00000074304	NM_001134224.1	506	Atg/Gtg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99181152	99181152	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1303725216		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	47	586	0	ENST00000074304.5:c.2093A>G	p.His698Arg	p.H698R	ENST00000074304	NM_001134224.1	698	cAt/cGt																																																																														
CASP8	841	MSKCC	GRCh37	2	202149596	202149596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	100	488	0	ENST00000358485.4:c.1037G>A	p.Cys346Tyr	p.C346Y	ENST00000358485	NM_001080125.1	346	tGc/tAc																																																																														
INHA	3623	MSKCC	GRCh37	2	220439511	220439511	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs577636996		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	29	589	0	ENST00000243786.2:c.364C>T	p.Arg122Cys	p.R122C	ENST00000243786	NM_002191.3	122	Cgc/Tgc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793363	242793363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	44	803	0	ENST00000334409.5:c.714del	p.Val239CysfsTer39	p.V239Cfs*39	ENST00000334409	NM_005018.2	238	ccC/cc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206777	36206777	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	44	492	0	ENST00000300305.3:c.735del	p.Thr246ArgfsTer8	p.T246Rfs*8	ENST00000300305		245	ccC/cc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656840	45656840	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	38	513	1	ENST00000407780.3:c.316del	p.Gln106ArgfsTer11	p.Q106Rfs*11	ENST00000407780	NM_001283052.1	106	Cag/ag																																																																														
EP300	2033	MSKCC	GRCh37	22	41573680	41573680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	48	588	1	ENST00000263253.7:c.5965A>G	p.Met1989Val	p.M1989V	ENST00000263253	NM_001429.3	1989	Atg/Gtg																																																																														
EP300	2033	MSKCC	GRCh37	22	41574470	41574470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	108	624	0	ENST00000263253.7:c.6755A>T	p.Glu2252Val	p.E2252V	ENST00000263253	NM_001429.3	2252	gAg/gTg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12475455	12475455	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	132	564	0	ENST00000287820.6:c.1329A>C	p.Gln443His	p.Q443H	ENST00000287820	NM_015869.4	443	caA/caC																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732957	30732957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs727504421		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	30	256	0	ENST00000359013.4:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000359013	NM_001024847.2	549	Gac/Aac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	30	468	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	27	406	1	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936002	49936004	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	45	682	0	ENST00000296474.3:c.1666_1668del	p.Lys556del	p.K556del	ENST00000296474	NM_002447.2	556	AAG/-																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443613	52443613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	104	458	0	ENST00000460680.1:c.79del	p.Val27CysfsTer45	p.V27Cfs*45	ENST00000460680	NM_004656.3	27	Gtg/tg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021818	71021818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs869025203		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	44	219	0	ENST00000318789.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000318789	NM_032682.5	514	Cgt/Tgt																																																																														
RYBP	23429	MSKCC	GRCh37	3	72428542	72428544	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs768490904		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	61	417	0	ENST00000477973.2:c.458_460del	p.Gln154del	p.Q154del	ENST00000477973	NM_012234.5	154	CAA/-																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204873	128204873	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	36	800	1	ENST00000341105.2:c.568del	p.Ala190LeufsTer28	p.A190Lfs*28	ENST00000341105	NM_032638.4	190	Gct/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916644	178916644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	38	311	0	ENST00000263967.3:c.31T>C	p.Trp11Arg	p.W11R	ENST00000263967	NM_006218.2	11	Tgg/Cgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916875	178916875	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	25	536	0	ENST00000263967.3:c.262C>T	p.Arg88Ter	p.R88*	ENST00000263967	NM_006218.2	88	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928039	178928039	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	25	434	0	ENST00000263967.3:c.1321del	p.Met441TrpfsTer3	p.M441Wfs*3	ENST00000263967	NM_006218.2	439	ggA/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	14	310	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430629	181430629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	28	530	0	ENST00000325404.1:c.481G>A	p.Ala161Thr	p.A161T	ENST00000325404	NM_003106.3	161	Gcg/Acg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535360	66535360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	57	583	1	ENST00000273854.3:c.101C>T	p.Ala34Val	p.A34V	ENST00000273854	NM_004439.5	34	gCa/gTa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143324184	143324185	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	42	237	0	ENST00000262992.4:c.278dup	p.Leu93PhefsTer9	p.L93Ffs*9	ENST00000262992	NM_001101669.1	93	ttg/ttTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187519145	187519145	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	26	355	0	ENST00000441802.2:c.12238G>T	p.Gly4080Ter	p.G4080*	ENST00000441802	NM_005245.3	4080	Gga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1293851	1293851	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	61	960	0	ENST00000310581.5:c.1150del	p.Gln384SerfsTer125	p.Q384Sfs*125	ENST00000310581	NM_198253.2	384	Cag/ag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515149	31515149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	134	774	1	ENST00000344624.3:c.1236G>A	p.Trp412Ter	p.W412*	ENST00000344624		412	tgG/tgA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38949958	38949958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	22	378	0	ENST00000357387.3:c.3992C>T	p.Ala1331Val	p.A1331V	ENST00000357387	NM_152756.3	1331	gCt/gTt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38954947	38954947	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771642192		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	22	288	0	ENST00000357387.3:c.2626G>A	p.Val876Ile	p.V876I	ENST00000357387	NM_152756.3	876	Gtc/Atc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	80	377	5	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	217	513	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645084	86645084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	57	335	0	ENST00000274376.6:c.1156T>C	p.Tyr386His	p.Y386H	ENST00000274376	NM_002890.2	386	Tat/Cat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562876	176562876	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1268581071		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	121	411	0	ENST00000439151.2:c.772T>C	p.Phe258Leu	p.F258L	ENST00000439151	NM_022455.4	258	Ttt/Ctt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030307	180030308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs772530628		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	111	734	0	ENST00000261937.6:c.3976dup	p.Ala1326GlyfsTer118	p.A1326Gfs*118	ENST00000261937	NM_182925.4	1326	gcc/gGcc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	121	620	8	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322267	31322267	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1478537435		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	12	225	0	ENST00000412585.2:c.1082C>T	p.Thr361Ile	p.T361I	ENST00000412585	NM_005514.6	361	aCa/aTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168664	32168664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	57	541	0	ENST00000375023.3:c.4259C>T	p.Ala1420Val	p.A1420V	ENST00000375023	NM_004557.3	1420	gCc/gTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553296	106553296	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	72	412	0	ENST00000369096.4:c.1261A>G	p.Asn421Asp	p.N421D	ENST00000369096	NM_001198.3	421	Aat/Gat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55229234	55229234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	41	337	0	ENST00000275493.2:c.1541G>A	p.Gly514Asp	p.G514D	ENST00000275493	NM_005228.3	514	gGc/gAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508508	106508508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	15	218	0	ENST00000359195.3:c.502G>A	p.Val168Met	p.V168M	ENST00000359195	NM_002649.2	168	Gtg/Atg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285495	38285495	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223331		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	148	657	0	ENST00000425967.3:c.658C>T	p.Arg220Cys	p.R220C	ENST00000425967	NM_001174067.1	220	Cgc/Tgc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739881	145739881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764297840		P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	134	700	0	ENST00000428558.2:c.1649C>T	p.Ala550Val	p.A550V	ENST00000428558	NM_004260.3	550	gCg/gTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133738279	133738279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	23	469	0	ENST00000318560.5:c.679G>T	p.Gly227Cys	p.G227C	ENST00000318560	NM_005157.4	227	Ggt/Tgt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771719	135771720	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	122	624	0	ENST00000298552.3:c.3397dup	p.Leu1133ProfsTer26	p.L1133Pfs*26	ENST00000298552	NM_001162426.1	1133	ctg/cCtg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	76	490	1	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411518	63411518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	35	799	0	ENST00000330258.3:c.1649C>T	p.Pro550Leu	p.P550L	ENST00000330258	NM_152424.3	550	cCa/cTa																																																																														
MED12	9968	MSKCC	GRCh37	X	70339230	70339230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	109	479	0	ENST00000374080.3:c.107T>C	p.Leu36Pro	p.L36P	ENST00000374080		36	cTg/cCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444808	49444809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	38	731	0	ENST00000301067.7:c.2657dup	p.Gly887TrpfsTer16	p.G887Wfs*16	ENST00000301067	NM_003482.3	886	cct/ccCt																																																																														
AR	367	MSKCC	GRCh37	X	66766424	66766424	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	13	186	0	ENST00000374690.3:c.1440del	p.Tyr481ThrfsTer29	p.Y481Tfs*29	ENST00000374690	NM_000044.3	479	gCc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	88	424	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933367	39933367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754579483		P-0037424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	11	622	1	ENST00000378444.4:c.1232G>A	p.Arg411Gln	p.R411Q	ENST00000378444	NM_001123385.1	411	cGg/cAg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841488	156841488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1023556915		P-0037424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	14	608	1	ENST00000524377.1:c.791C>T	p.Thr264Met	p.T264M	ENST00000524377	NM_002529.3	264	aCg/aTg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533581	63533582	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0037424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	55	686	1	ENST00000307078.5:c.1572_1573delinsGT	p.Pro525Ser	p.P525S	ENST00000307078	NM_004655.3	524	gtCCcc/gtGTcc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0037458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	85	454	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138407755	138407755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	78	372	0	ENST00000289153.2:c.2098C>G	p.Arg700Gly	p.R700G	ENST00000289153	NM_006219.2	700	Cgg/Ggg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	39	510	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0037492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	69	492	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	59	364	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391214	89391214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs530556931		P-0037492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	59	465	1	ENST00000336596.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000336596	NM_005233.5	427	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	219	655	0	ENST00000269305.4:c.838A>T	p.Arg280Ter	p.R280*	ENST00000269305	NM_001126112.2	280	Aga/Tga																																																																														
STK11	6794	MSKCC	GRCh37	19	1220703	1220703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	23	576	0	ENST00000326873.7:c.721G>C	p.Ala241Pro	p.A241P	ENST00000326873	NM_000455.4	241	Gct/Cct																																																																														
NBN	4683	MSKCC	GRCh37	8	90982653	90982653	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	24	447	0	ENST00000265433.3:c.835C>T	p.Gln279Ter	p.Q279*	ENST00000265433	NM_002485.4	279	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0037545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	380	706	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247294	153247294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	107	297	1	ENST00000281708.4:c.1508C>T	p.Ala503Val	p.A503V	ENST00000281708	NM_033632.3	503	gCa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438210	49438210	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	177	771	0	ENST00000301067.7:c.5059del	p.Arg1687AlafsTer35	p.R1687Afs*35	ENST00000301067	NM_003482.3	1687	Cgc/gc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40477081	40477081	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0037545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	115	400	0	ENST00000264657.5:c.1366-2A>G		p.X456_splice	ENST00000264657	NM_139276.2	456																																																																															
HIST1H3G	8355	MSKCC	GRCh37	6	26271252	26271252	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs937808792		P-0037545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	80	483	0	ENST00000305910.3:c.361A>G	p.Met121Val	p.M121V	ENST00000305910	NM_003534.2	121	Atg/Gtg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0037548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	94	312	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576890	7576890	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	346	687	0	ENST00000269305.4:c.956del	p.Lys319ArgfsTer26	p.K319Rfs*26	ENST00000269305	NM_001126112.2	319	aAg/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912654		P-0037548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	77	635	0	ENST00000269305.4:c.469G>A	p.Val157Ile	p.V157I	ENST00000269305	NM_001126112.2	157	Gtc/Atc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085924	16085924	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1251450674		P-0037548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	171	458	0	ENST00000281043.3:c.1100C>G	p.Ala367Gly	p.A367G	ENST00000281043	NM_005378.4	367	gCt/gGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	92	444	3	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	83	503	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	76	437	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	45	285	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24143260	24143260	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	122	712	0	ENST00000263121.7:c.496del	p.Leu166PhefsTer10	p.L166Ffs*10	ENST00000263121	NM_003073.3	164	ttC/tt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	59	273	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752800	57752800	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	57	375	3	ENST00000274289.3:c.1128del	p.Asp377ThrfsTer26	p.D377Tfs*26	ENST00000274289	NM_006622.3	376	aaA/aa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500625	99500625	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149470389		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	67	365	1	ENST00000268035.6:c.4058G>A	p.Arg1353His	p.R1353H	ENST00000268035	NM_000875.3	1353	cGc/cAc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	72	692	3	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	68	425	1	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	159	710	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	70	443	5	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	61	333	12	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	81	510	5	ENST00000440232.2:c.342del	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	27	144	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	73	513	1	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																																																														
TET1	80312	MSKCC	GRCh37	10	70333991	70333993	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs903550402		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	40	195	0	ENST00000373644.4:c.1902_1904del	p.Val635del	p.V635del	ENST00000373644	NM_030625.2	632	tcTGTt/tct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165569	47165569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78759480		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	108	483	0	ENST00000409792.3:c.557C>T	p.Pro186Leu	p.P186L	ENST00000409792	NM_014159.6	186	cCg/cTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	118	536	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031815	10031815	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs397518465		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	90	534	1	ENST00000330684.3:c.1007+1G>A		p.X336_splice	ENST00000330684	NM_001134407.1	336																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29090060	29090060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908706		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	48	208	0	ENST00000328354.6:c.1421G>A	p.Arg474His	p.R474H	ENST00000328354	NM_007194.3	474	cGt/cAt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2127694	2127694	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660733		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	89	512	0	ENST00000219476.3:c.2933G>A	p.Arg978His	p.R978H	ENST00000219476	NM_000548.3	978	cGc/cAc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324886	31324887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760037174		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	32	380	0	ENST00000412585.2:c.49_50insG	p.Leu17ArgfsTer82	p.L17Rfs*82	ENST00000412585	NM_005514.6	17	ctg/cGtg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250839	99250839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774734018		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	62	401	0	ENST00000268035.6:c.143G>A	p.Arg48His	p.R48H	ENST00000268035	NM_000875.3	48	cGc/cAc																																																																														
AXL	558	MSKCC	GRCh37	19	41762431	41762431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	95	486	1	ENST00000301178.4:c.2111G>A	p.Arg704His	p.R704H	ENST00000301178	NM_021913.4	704	cGc/cAc																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793676	89793677	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	50	246	0	ENST00000336032.3:c.752dup	p.Pro252AlafsTer3	p.P252Afs*3	ENST00000336032	NM_006813.2	249	gaa/gAaa																																																																														
CD276	80381	MSKCC	GRCh37	15	73994829	73994829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751833994		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	40	306	1	ENST00000318443.5:c.313G>A	p.Ala105Thr	p.A105T	ENST00000318443	NM_001024736.1	105	Gca/Aca																																																																														
AR	367	MSKCC	GRCh37	X	66765350	66765350	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749864595		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	105	644	0	ENST00000374690.3:c.362C>T	p.Ser121Leu	p.S121L	ENST00000374690	NM_000044.3	121	tCg/tTg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074168	8074169	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	70	315	1	ENST00000377482.5:c.490_491del	p.Leu164GlyfsTer2	p.L164Gfs*2	ENST00000377482	NM_018948.3	164	CTg/g																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925582	114925582	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	138	558	0	ENST00000543371.1:c.1663del	p.Ala555ProfsTer47	p.A555Pfs*47	ENST00000543371	NM_001198531.1	554	Ggg/gg																																																																														
ATM	472	MSKCC	GRCh37	11	108151869	108151869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	77	428	0	ENST00000278616.4:c.3550G>A	p.Gly1184Arg	p.G1184R	ENST00000278616	NM_000051.3	1184	Gga/Aga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434981	49434981	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs572145631		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	54	378	0	ENST00000301067.7:c.6572C>T	p.Thr2191Met	p.T2191M	ENST00000301067	NM_003482.3	2191	aCg/aTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133209301	133209302	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	121	616	0	ENST00000320574.5:c.6084_6085insA	p.Gly2029ArgfsTer30	p.G2029Rfs*30	ENST00000320574	NM_006231.2	2028	-/A																																																																														
RB1	5925	MSKCC	GRCh37	13	48937016	48937016	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs556201144		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	49	270	2	ENST00000267163.4:c.784C>T	p.Arg262Trp	p.R262W	ENST00000267163	NM_000321.2	262	Cgg/Tgg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30396565	30396565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	75	401	0	ENST00000331968.5:c.154C>A	p.His52Asn	p.H52N	ENST00000331968	NM_002742.2	52	Cat/Aat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582827	95582827	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	56	302	0	ENST00000343455.3:c.1715T>A	p.Phe572Tyr	p.F572Y	ENST00000343455	NM_177438.2	572	tTt/tAt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81925161	81925161	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1384764686		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	94	499	0	ENST00000359376.3:c.952C>A	p.Leu318Met	p.L318M	ENST00000359376	NM_002661.3	318	Ctg/Atg																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110189	8110189	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753106886		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	82	445	0	ENST00000585124.1:c.416G>A	p.Arg139His	p.R139H	ENST00000585124	NM_004217.3	139	cGt/cAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29576049	29576049	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	101	405	0	ENST00000358273.4:c.4022A>G	p.Gln1341Arg	p.Q1341R	ENST00000358273	NM_001042492.2	1341	cAg/cGg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581325	48581325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	90	456	1	ENST00000342988.3:c.629G>A	p.Ser210Asn	p.S210N	ENST00000342988	NM_005359.5	210	aGc/aAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224199	36224199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775887663		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	113	647	0	ENST00000222270.7:c.6749G>A	p.Arg2250His	p.R2250H	ENST00000222270	NM_014727.1	2250	cGc/cAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42796799	42796799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	133	802	2	ENST00000575354.2:c.3261del	p.Gly1088GlufsTer5	p.G1088Efs*5	ENST00000575354	NM_015125.3	1086	gCc/gc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721118	61721118	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	120	454	0	ENST00000401558.2:c.1156T>C	p.Phe386Leu	p.F386L	ENST00000401558	NM_003400.3	386	Ttc/Ctc																																																																														
CASP8	841	MSKCC	GRCh37	2	202149727	202149728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	108	579	0	ENST00000358485.4:c.1173dup	p.Ile392HisfsTer3	p.I392Hfs*3	ENST00000358485	NM_001080125.1	390	gcc/gCcc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212568866	212568866	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	86	416	0	ENST00000342788.4:c.1252del	p.Ser418LeufsTer4	p.S418Lfs*4	ENST00000342788	NM_005235.2	418	Tct/ct																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46255845	46255845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	78	351	0	ENST00000371998.3:c.457G>A	p.Val153Ile	p.V153I	ENST00000371998		153	Gtt/Att																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288173	21288173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	102	516	0	ENST00000354336.3:c.418G>A	p.Glu140Lys	p.E140K	ENST00000354336	NM_005207.3	140	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521507	187521507	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	61	337	0	ENST00000441802.2:c.11648A>G	p.His3883Arg	p.H3883R	ENST00000441802	NM_005245.3	3883	cAt/cGt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131926963	131926963	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	31	136	1	ENST00000265335.6:c.1504del	p.Met502TrpfsTer3	p.M502Wfs*3	ENST00000265335		500	ttA/tt																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323149	31323150	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	82	520	0	ENST00000412585.2:c.839_840del	p.Arg280IlefsTer8	p.R280Ifs*8	ENST00000412585	NM_005514.6	280	aGA/a																																																																														
ROS1	6098	MSKCC	GRCh37	6	117730804	117730804	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs140860347		P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	116	441	0	ENST00000368508.3:c.230G>A	p.Arg77Gln	p.R77Q	ENST00000368508	NM_002944.2	77	cGg/cAg																																																																														
SMO	6608	MSKCC	GRCh37	7	128845457	128845457	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	153	676	0	ENST00000249373.3:c.754T>A	p.Phe252Ile	p.F252I	ENST00000249373	NM_005631.4	252	Ttc/Atc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80646066	80646066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	25	166	0	ENST00000286548.4:c.86T>C	p.Leu29Pro	p.L29P	ENST00000286548	NM_002072.3	29	cTc/cCc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239622	53239622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	127	645	1	ENST00000375401.3:c.1720A>G	p.Asn574Asp	p.N574D	ENST00000375401	NM_004187.3	574	Aac/Gac																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412248	63412248	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	142	848	0	ENST00000330258.3:c.919del	p.Asp307ThrfsTer3	p.D307Tfs*3	ENST00000330258	NM_152424.3	307	Gac/ac																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205129	123205129	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	117	522	0	ENST00000218089.9:c.2489T>C	p.Leu830Ser	p.L830S	ENST00000218089	NM_001042749.1	830	tTg/tCg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123229240	123229240	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs867285087		P-0037604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	84	216	1	ENST00000218089.9:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000218089	NM_001042749.1	1242	Cga/Tga																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519966		P-0037604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	187	624	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675074	40675074	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	161	664	0	ENST00000249776.8:c.38T>G	p.Phe13Cys	p.F13C	ENST00000249776	NM_033286.3	13	tTc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0037614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	78	541	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	52	409	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	136	325	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	232	473	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	112	235	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849863	156849863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747855434		P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	201	449	0	ENST00000524377.1:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000524377	NM_002529.3	707	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922695	44922695	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	203	220	0	ENST00000377967.4:c.1556G>C	p.Arg519Pro	p.R519P	ENST00000377967	NM_021140.2	519	cGa/cCa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046548	30046548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	105	444	0	ENST00000331968.5:c.2635C>A	p.Gln879Lys	p.Q879K	ENST00000331968	NM_002742.2	879	Cag/Aag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119865	70119866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATG			P-0037616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	68	388	0	ENST00000245479.2:c.868_871dup	p.Val291GlyfsTer6	p.V291Gfs*6	ENST00000245479	NM_000346.3	289	-/GATG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913382		P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	104	486	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913382		P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	104	486	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	110	509	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	434	886	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913382		P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	104	486	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111012	193111012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	120	311	0	ENST00000367435.3:c.545T>A	p.Ile182Asn	p.I182N	ENST00000367435	NM_024529.4	182	aTt/aAt																																																																														
JUN	3725	MSKCC	GRCh37	1	59247793	59247794	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	209	912	0	ENST00000371222.2:c.949_950del	p.Asn317GlnfsTer30	p.N317Qfs*30	ENST00000371222	NM_002228.3	317	AAc/c																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400950	72400950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	80	438	0	ENST00000357731.5:c.221G>A	p.Arg74Gln	p.R74Q	ENST00000357731	NM_173808.2	74	cGg/cAg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554129	63554129	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	141	835	0	ENST00000307078.5:c.610G>T	p.Gly204Ter	p.G204*	ENST00000307078	NM_004655.3	204	Gga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530094	212530094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	67	391	0	ENST00000342788.4:c.1825G>C	p.Asp609His	p.D609H	ENST00000342788	NM_005235.2	609	Gat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	351	491	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	387	776	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257860	198257860	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	55	572	0	ENST00000335508.6:c.3592G>C	p.Gly1198Arg	p.G1198R	ENST00000335508	NM_012433.2	1198	Ggg/Cgg																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025621	1025621	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763842232		P-0037834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	425	760	0	ENST00000358495.3:c.754G>A	p.Glu252Lys	p.E252K	ENST00000358495	NM_134424.2	252	Gag/Aag																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0037834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	374	804	0	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501194		P-0037834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	616	724	0	ENST00000269305.4:c.790del	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	264	Cta/ta																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982394	201982394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	380	972	0	ENST00000359651.3:c.773G>A	p.Trp258Ter	p.W258*	ENST00000359651		258	tGg/tAg																																																																														
PGR	5241	MSKCC	GRCh37	11	100999773	100999773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1025431009		P-0037834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	207	895	1	ENST00000325455.5:c.29G>A	p.Arg10Gln	p.R10Q	ENST00000325455	NM_001202474.3	10	cGg/cAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799326	88799327	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	343	611	0	ENST00000360948.2:c.58dup	p.Ser20LysfsTer23	p.S20Kfs*23	ENST00000360948	NM_001012338.2	20	agc/aAgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0037857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	107	368	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0037857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	112	173	0	ENST00000324856.7:c.413C>G	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tGa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729968	30729968	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs863223852		P-0037857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	211	405	0	ENST00000359013.4:c.1564C>T	p.Arg522Ter	p.R522*	ENST00000359013	NM_001024847.2	522	Cga/Tga																																																																														
MDM2	4193	MSKCC	GRCh37	12	69229729	69229729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	36	265	0	ENST00000462284.1:c.805G>A	p.Glu269Lys	p.E269K	ENST00000462284	NM_002392.5	269	Gaa/Aaa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21619955	21619955	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756666534		P-0037890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	134	556	1	ENST00000382592.4:c.211G>A	p.Gly71Arg	p.G71R	ENST00000382592	NM_014572.2	71	Gga/Aga																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998899	11998899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	48	234	0	ENST00000353533.5:c.401G>A	p.Arg134Gln	p.R134Q	ENST00000353533	NM_003010.3	134	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579539	7579541	+	frameshift_variant	Frame_Shift_Del	DEL	TAT	TAT	A			P-0037890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	254	690	1	ENST00000269305.4:c.146_148delinsT	p.Asp49ValfsTer2	p.D49Vfs*2	ENST00000269305	NM_001126112.2	49	gATAtt/gTtt																																																																														
AR	367	MSKCC	GRCh37	X	66765159	66765191	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-	rs1343227414		P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	34	180	0	ENST00000374690.3:c.207_239del	p.Gln70_Gln80del	p.Q70_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86686687	86686689	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	73	399	0	ENST00000274376.6:c.3134_3136del	p.Asp1045del	p.D1045del	ENST00000274376	NM_002890.2	1044	aATGat/aat																																																																														
ATM	472	MSKCC	GRCh37	11	108216499	108216499	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	160	336	0	ENST00000278616.4:c.8448A>T	p.Lys2816Asn	p.K2816N	ENST00000278616	NM_000051.3	2816	aaA/aaT																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81960738	81960738	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	46	721	0	ENST00000359376.3:c.2469C>G	p.Tyr823Ter	p.Y823*	ENST00000359376	NM_002661.3	823	taC/taG																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26022253	26022253	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	346	578	0	ENST00000435504.4:c.403+1G>A		p.X135_splice	ENST00000435504		135																																																																															
ACVR1	90	MSKCC	GRCh37	2	158617424	158617424	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	92	631	0	ENST00000263640.3:c.1232T>G	p.Leu411Trp	p.L411W	ENST00000263640	NM_001105.4	411	tTg/tGg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576870	212576870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	88	492	0	ENST00000342788.4:c.1029G>T	p.Met343Ile	p.M343I	ENST00000342788	NM_005235.2	343	atG/atT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179185	123179185	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	313	302	0	ENST00000218089.9:c.634G>T	p.Val212Phe	p.V212F	ENST00000218089	NM_001042749.1	212	Gtc/Ttc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039385	49039385	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs794727372		P-0038841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	317	543	0	ENST00000267163.4:c.2370C>A	p.Tyr790Ter	p.Y790*	ENST00000267163	NM_000321.2	790	taC/taA																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509422	149509422	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	292	639	0	ENST00000261799.4:c.1477A>T	p.Ser493Cys	p.S493C	ENST00000261799	NM_002609.3	493	Agc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76891549	76891549	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0038841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	194	163	0	ENST00000373344.5:c.4558-2A>G		p.X1520_splice	ENST00000373344	NM_000489.3	1520																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	91	392	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs876660254		P-0038855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	141	486	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254962	16254962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	41	329	0	ENST00000375759.3:c.2227C>T	p.Gln743Ter	p.Q743*	ENST00000375759	NM_015001.2	743	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	48881544	48881544	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0038855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	92	211	0	ENST00000267163.4:c.264+2T>C		p.X88_splice	ENST00000267163	NM_000321.2	88																																																																															
RFWD2	0	MSKCC	GRCh37	1	176175987	176175987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	48	234	0	ENST00000367669.3:c.128C>T	p.Ser43Leu	p.S43L	ENST00000367669	NM_022457.5	43	tCg/tTg																																																																														
NF2	4771	MSKCC	GRCh37	22	30051598	30051598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	68	220	0	ENST00000338641.4:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000338641	NM_000268.3	178	Cag/Tag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180076488	180076488	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs749884420		P-0038855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	26	116	0	ENST00000261937.6:c.58G>T	p.Gly20Cys	p.G20C	ENST00000261937	NM_182925.4	20	Ggc/Tgc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652034	36652035	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	138	609	0	ENST00000244741.5:c.159dup	p.Val54CysfsTer9	p.V54Cfs*9	ENST00000244741	NM_000389.4	52	-/T																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225896	53225896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	75	349	0	ENST00000375401.3:c.2953G>A	p.Glu985Lys	p.E985K	ENST00000375401	NM_004187.3	985	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0039051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	269	721	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997744	149997798	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGCTAGACATCGCTGGTGCTGGCGTGCAGCTCTCCGCTCTAATGGCTTCAGTC	TGTGCTAGACATCGCTGGTGCTGGCGTGCAGCTCTCCGCTCTAATGGCTTCAGTC	-			P-0039051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	57	382	0	ENST00000253339.5:c.2669_2723del	p.Arg890IlefsTer49	p.R890Ifs*49	ENST00000253339		890	aGACTGAAGCCATTAGAGCGGAGAGCTGCACGCCAGCACCAGCGATGTCTAGCACAt/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	33	361	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0039173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	54	608	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553761	106553761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	73	379	4	ENST00000369096.4:c.1726G>A	p.Glu576Lys	p.E576K	ENST00000369096	NM_001198.3	576	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781288		P-0039173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	106	794	0	ENST00000269305.4:c.422G>T	p.Cys141Phe	p.C141F	ENST00000269305	NM_001126112.2	141	tGc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175436	+	frameshift_variant	Frame_Shift_Del	DEL	GAGACCCCACT	GAGACCCCACT	-			P-0039173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	45	296	0	ENST00000257430.4:c.4135_4145del	p.Glu1379HisfsTer3	p.E1379Hfs*3	ENST00000257430	NM_000038.5	1379	GAGACCCCACTc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	54	425	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	35	443	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	56	478	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	31	362	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	110	613	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670774	134670774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1435725610		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	47	463	0	ENST00000398015.3:c.685G>A	p.Ala229Thr	p.A229T	ENST00000398015	NM_004441.4	229	Gca/Aca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	48	465	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71101751	71101751	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	24	219	0	ENST00000318789.4:c.447del	p.Lys149AsnfsTer57	p.K149Nfs*57	ENST00000318789	NM_032682.5	149	aaA/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101327	27101327	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	55	597	1	ENST00000324856.7:c.4609C>T	p.Gln1537Ter	p.Q1537*	ENST00000324856	NM_006015.4	1537	Cag/Tag																																																																														
CBL	867	MSKCC	GRCh37	11	119149250	119149250	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200341293		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	52	485	0	ENST00000264033.4:c.1258C>T	p.Arg420Ter	p.R420*	ENST00000264033	NM_005188.3	420	Cga/Tga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137033	64137033	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759826654		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	56	537	1	ENST00000334205.4:c.1544C>T	p.Ser515Leu	p.S515L	ENST00000334205	NM_003942.2	515	tCg/tTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508673	106508673	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs554272230		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	37	518	0	ENST00000359195.3:c.667G>A	p.Val223Ile	p.V223I	ENST00000359195	NM_002649.2	223	Gtc/Atc																																																																														
MET	4233	MSKCC	GRCh37	7	116380973	116380973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	40	480	0	ENST00000397752.3:c.1595C>T	p.Ala532Val	p.A532V	ENST00000397752	NM_000245.2	532	gCc/gTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	40	547	2	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851687	134851687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	41	473	1	ENST00000398015.3:c.1093G>A	p.Ala365Thr	p.A365T	ENST00000398015	NM_004441.4	365	Gca/Aca																																																																														
INSR	3643	MSKCC	GRCh37	19	7184534	7184534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775222338		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	42	499	0	ENST00000302850.5:c.767G>A	p.Arg256His	p.R256H	ENST00000302850	NM_000208.2	256	cGc/cAc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161277	56161277	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	24	285	0	ENST00000399503.3:c.1149del	p.Phe383LeufsTer53	p.F383Lfs*53	ENST00000399503	NM_005921.1	382	aaT/aa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604704	48604704	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	38	394	1	ENST00000342988.3:c.1529del	p.Gly510AspfsTer27	p.G510Dfs*27	ENST00000342988	NM_005359.5	509	tGg/tg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921550	178921551	+	inframe_insertion	In_Frame_Ins	INS	-	-	AATGTA			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	42	306	0	ENST00000263967.3:c.1036_1041dup	p.Val346_Asn347dup	p.V346_N347dup	ENST00000263967	NM_006218.2	346	-/AATGTA																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330639	65330639	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	29	309	0	ENST00000342505.4:c.1007del	p.Lys336ArgfsTer6	p.K336Rfs*6	ENST00000342505	NM_002227.2	336	aAg/ag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11270909	11270909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	55	385	0	ENST00000361445.4:c.3616C>A	p.His1206Asn	p.H1206N	ENST00000361445	NM_004958.3	1206	Cat/Aat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258436	16258436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	48	567	0	ENST00000375759.3:c.5701C>T	p.Arg1901Cys	p.R1901C	ENST00000375759	NM_015001.2	1901	Cgc/Tgc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739048	46739049	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	44	469	0	ENST00000371975.4:c.1397_1398insCT	p.Lys466AsnfsTer43	p.K466Nfs*43	ENST00000371975	NM_003579.3	466	aag/aaCTg																																																																														
YAP1	10413	MSKCC	GRCh37	11	102076800	102076800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768834182		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	60	679	0	ENST00000282441.5:c.979C>T	p.Arg327Trp	p.R327W	ENST00000282441	NM_001130145.2	327	Cgg/Tgg																																																																														
MGA	23269	MSKCC	GRCh37	15	42003481	42003481	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	41	512	0	ENST00000219905.7:c.3021del	p.Lys1007AsnfsTer15	p.K1007Nfs*15	ENST00000219905	NM_001164273.1	1006	ggA/gg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832120	72832124	+	frameshift_variant	Frame_Shift_Del	DEL	TATGG	TATGG	-			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	35	435	0	ENST00000268489.5:c.4457_4461del	p.Thr1486AsnfsTer3	p.T1486Nfs*3	ENST00000268489	NM_006885.3	1486	aCCATA/a																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923799	72923799	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	49	613	0	ENST00000268489.5:c.3279C>A	p.Cys1093Ter	p.C1093*	ENST00000268489	NM_006885.3	1093	tgC/tgA																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341520	89341520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	46	460	0	ENST00000301030.4:c.7550T>A	p.Leu2517Gln	p.L2517Q	ENST00000301030	NM_001256183.1	2517	cTa/cAa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131218	17131219	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	62	640	0	ENST00000285071.4:c.233dup	p.Ser79ValfsTer21	p.S79Vfs*21	ENST00000285071	NM_144997.5	78	aag/aaAg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118915	70118915	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1469442385		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	61	592	1	ENST00000245479.2:c.487G>A	p.Val163Met	p.V163M	ENST00000245479	NM_000346.3	163	Gtg/Atg																																																																														
STK11	6794	MSKCC	GRCh37	19	1218423	1218423	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs757841535		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	44	508	0	ENST00000326873.7:c.298C>G	p.Gln100Glu	p.Q100E	ENST00000326873	NM_000455.4	100	Caa/Gaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602938	10602938	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	46	593	0	ENST00000171111.5:c.640G>T	p.Val214Leu	p.V214L	ENST00000171111	NM_203500.1	214	Gtg/Ttg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11032083	11032083	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764885947		P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	49	603	1	ENST00000327064.4:c.1648C>T	p.Arg550Trp	p.R550W	ENST00000327064	NM_199141.1	550	Cgg/Tgg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661419	227661420	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	41	522	0	ENST00000305123.5:c.2035_2036delinsAG	p.Pro679Ser	p.P679S	ENST00000305123	NM_005544.2	679	CCc/AGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306593	41306593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	64	584	0	ENST00000373198.4:c.1066T>C	p.Tyr356His	p.Y356H	ENST00000373198	NM_133170.3	356	Tat/Cat																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266017	41266017	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	20	233	0	ENST00000349496.5:c.14C>A	p.Ala5Asp	p.A5D	ENST00000349496	NM_001904.3	5	gCt/gAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164209	47164209	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	35	310	0	ENST00000409792.3:c.1917A>C	p.Glu639Asp	p.E639D	ENST00000409792	NM_014159.6	639	gaA/gaC																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138407716	138407716	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	27	307	0	ENST00000289153.2:c.2136+1G>T		p.X712_splice	ENST00000289153	NM_006219.2	712																																																																															
WHSC1	0	MSKCC	GRCh37	4	1902780	1902780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	59	543	0	ENST00000382895.3:c.399G>A	p.Met133Ile	p.M133I	ENST00000382895	NM_133330.2	133	atG/atA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522451	187522451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	39	521	0	ENST00000441802.2:c.11612C>T	p.Ala3871Val	p.A3871V	ENST00000441802	NM_005245.3	3871	gCt/gTt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162886	38162886	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	54	531	0	ENST00000317025.8:c.2320del	p.Tyr774IlefsTer43	p.Y774Ifs*43	ENST00000317025	NM_023034.1	774	Tat/at																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922268	39922276	+	inframe_deletion	In_Frame_Del	DEL	CTGCACTGG	CTGCACTGG	-			P-0039294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	38	397	0	ENST00000378444.4:c.3896_3904del	p.Thr1299_Gly1302delinsSer	p.T1299_G1302delinsS	ENST00000378444	NM_001123385.1	1299	aCCAGTGCAGgc/agc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	162	394	0	ENST00000371953.3:c.494G>A	p.Gly165Glu	p.G165E	ENST00000371953	NM_000314.4	165	gGa/gAa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222726	5222726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779918003		P-0039435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	271	462	1	ENST00000357368.4:c.3077G>A	p.Arg1026His	p.R1026H	ENST00000357368	NM_002850.3	1026	cGc/cAc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572289	64572289	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G	rs794728629		P-0039435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	255	559	0	ENST00000337652.1:c.1366-1G>C		p.X456_splice	ENST00000337652	NM_130803.2	456																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288561	33288561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	222	466	0	ENST00000374542.5:c.991G>C	p.Asp331His	p.D331H	ENST00000374542	NM_001141970.1	331	Gat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0039546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	95	289	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0039546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	121	296	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560476	95560476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	201	404	0	ENST00000343455.3:c.5113G>A	p.Glu1705Lys	p.E1705K	ENST00000343455	NM_177438.2	1705	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs786201995		P-0039546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	164	396	0	ENST00000371953.3:c.70G>T	p.Asp24Tyr	p.D24Y	ENST00000371953	NM_000314.4	24	Gac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916618	178916618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	71	280	0	ENST00000263967.3:c.5C>T	p.Pro2Leu	p.P2L	ENST00000263967	NM_006218.2	2	cCt/cTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717687	89717690	+	frameshift_variant	Frame_Shift_Del	DEL	TTCA	TTCA	-			P-0039546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	139	350	0	ENST00000371953.3:c.713_716del	p.Phe238CysfsTer17	p.F238Cfs*17	ENST00000371953	NM_000314.4	238	TTCAtg/tg																																																																														
FH	2271	MSKCC	GRCh37	1	241680606	241680606	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	106	310	0	ENST00000366560.3:c.143A>T	p.Asn48Ile	p.N48I	ENST00000366560	NM_000143.3	48	aAt/aTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692944	89692944	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786202047		P-0039546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	118	411	0	ENST00000371953.3:c.428G>A	p.Gly143Asp	p.G143D	ENST00000371953	NM_000314.4	143	gGc/gAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992795	72992805	+	stop_gained	Nonsense_Mutation	DEL	GAGGTAATGGG	GAGGTAATGGG	TA			P-0039546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	32	541	2	ENST00000268489.5:c.1240_1250delinsTA	p.Pro414_Ser417delinsTer	p.P414_S417delins*	ENST00000268489	NM_006885.3	414	CCCATTACCTCa/TAa																																																																														
CASP8	841	MSKCC	GRCh37	2	202149679	202149679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	167	471	0	ENST00000358485.4:c.1120C>A	p.Leu374Ile	p.L374I	ENST00000358485	NM_001080125.1	374	Ctc/Atc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992797	72992805	+	inframe_deletion	In_Frame_Del	DEL	GGTAATGGG	GGTAATGGG	-			P-0039546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	31	530	0	ENST00000268489.5:c.1240_1248del	p.Pro414_Thr416del	p.P414_T416del	ENST00000268489	NM_006885.3	414	CCCATTACC/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578504	7578512	+	inframe_deletion	In_Frame_Del	DEL	AGGGCAGGT	AGGGCAGGT	-			P-0039563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	384	774	0	ENST00000269305.4:c.418_426del	p.Thr140_Pro142del	p.T140_P142del	ENST00000269305	NM_001126112.2	140	ACCTGCCCT/-																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	23	597	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112441	115112448	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGACG	GGGCGACG	-			P-0039753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	147	601	0	ENST00000257566.3:c.1292_1299del	p.Ala431GlyfsTer5	p.A431Gfs*5	ENST00000257566	NM_016569.3	431	gCGTCGCCC/g																																																																														
POLE	5426	MSKCC	GRCh37	12	133263889	133263889	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	94	275	0	ENST00000320574.5:c.13A>T	p.Ser5Cys	p.S5C	ENST00000320574	NM_006231.2	5	Agc/Tgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950889	32950889	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	91	333	0	ENST00000380152.3:c.8715T>A	p.Tyr2905Ter	p.Y2905*	ENST00000380152		2905	taT/taA																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448386	56448387	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0039753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	104	791	0	ENST00000407977.2:c.259_260dup	p.Leu88ArgfsTer71	p.L88Rfs*71	ENST00000407977		87	ccg/ccCCg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66242762	66242762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	57	272	0	ENST00000273854.3:c.1810G>A	p.Gly604Arg	p.G604R	ENST00000273854	NM_004439.5	604	Ggg/Agg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11301616	11301616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	196	627	0	ENST00000361445.4:c.1535G>C	p.Gly512Ala	p.G512A	ENST00000361445	NM_004958.3	512	gGa/gCa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46270960	46270962	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0039782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	104	394	0	ENST00000371998.3:c.3088_3090del	p.Leu1030del	p.L1030del	ENST00000371998		1028	ccTCTt/cct																																																																														
MGA	23269	MSKCC	GRCh37	15	42034909	42034909	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	194	507	0	ENST00000219905.7:c.4751del	p.Ser1584LeufsTer10	p.S1584Lfs*10	ENST00000219905	NM_001164273.1	1584	tCt/tt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10244936	10244936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	181	694	1	ENST00000340748.4:c.4773G>T	p.Glu1591Asp	p.E1591D	ENST00000340748		1591	gaG/gaT																																																																														
ETV1	2115	MSKCC	GRCh37	7	14017054	14017054	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	47	344	0	ENST00000405192.2:c.233G>T	p.Ser78Ile	p.S78I	ENST00000405192	NM_001163147.1	78	aGt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0039804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	579	1050	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11303295	11303295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	539	1033	1	ENST00000361445.4:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000361445	NM_004958.3	430	Cgt/Tgt																																																																														
EP300	2033	MSKCC	GRCh37	22	41556654	41556670	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGTGAGAAGTGTTTC	TCTGTGAGAAGTGTTTC	-			P-0039804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	159	601	1	ENST00000263253.7:c.3599_3615del	p.Phe1200Ter	p.F1200*	ENST00000263253	NM_001429.3	1200	tTCTGTGAGAAGTGTTTC/t																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509612	106509612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1353	436	807	0	ENST00000359195.3:c.1606C>A	p.Pro536Thr	p.P536T	ENST00000359195	NM_002649.2	536	Cct/Act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	33	546	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1330865474		P-0039866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	42	765	0	ENST00000269305.4:c.761T>G	p.Ile254Ser	p.I254S	ENST00000269305	NM_001126112.2	254	aTc/aGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913277		P-0039870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	163	441	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274794	123274794	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913478		P-0039870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	312	669	0	ENST00000358487.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000358487	NM_000141.4	375	tAc/tGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720650	89720650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs1257124719		P-0039870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	269	316	0	ENST00000371953.3:c.802-1G>A		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20159750	20159750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	287	717	0	ENST00000379607.5:c.9G>T	p.Lys3Asn	p.K3N	ENST00000379607	NM_001412.3	3	aaG/aaT																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641019	3641019	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113420526		P-0039870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	531	1113	0	ENST00000294008.3:c.2620G>A	p.Gly874Ser	p.G874S	ENST00000294008	NM_032444.2	874	Ggc/Agc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918160	50918160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	372	1107	0	ENST00000440232.2:c.2477G>T	p.Cys826Phe	p.C826F	ENST00000440232	NM_002691.3	826	tGc/tTc																																																																														
IRF4	3662	MSKCC	GRCh37	6	393207	393207	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	255	644	0	ENST00000380956.4:c.55del	p.Cys19AlafsTer10	p.C19Afs*10	ENST00000380956	NM_001195286.1	19	Tgc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	333	551	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	333	551	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	333	551	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
RAF1	5894	MSKCC	GRCh37	3	12633223	12633223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	240	672	0	ENST00000251849.4:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000251849	NM_002880.3	393	Gag/Aag																																																																														
AR	367	MSKCC	GRCh37	X	66942818	66942818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137852564		P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	237	370	0	ENST00000374690.3:c.2599G>A	p.Val867Met	p.V867M	ENST00000374690	NM_000044.3	867	Gtg/Atg																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724409	112724410	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	150	769	1	ENST00000369452.4:c.293_294delinsTT	p.Arg98Leu	p.R98L	ENST00000369452	NM_007373.3	98	cGG/cTT																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434578	99434578	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199789940		P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	174	719	1	ENST00000268035.6:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000268035	NM_000875.3	222	cGg/cAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943766	9943766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	216	776	0	ENST00000330684.3:c.1175G>C	p.Arg392Thr	p.R392T	ENST00000330684	NM_001134407.1	392	aGg/aCg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031971	10031971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	238	889	1	ENST00000330684.3:c.852G>T	p.Trp284Cys	p.W284C	ENST00000330684	NM_001134407.1	284	tgG/tgT																																																																														
TP53	7157	MSKCC	GRCh37	17	7576896	7576897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	326	874	0	ENST00000269305.4:c.949dup	p.Gln317ProfsTer20	p.Q317Pfs*20	ENST00000269305	NM_001126112.2	317	cag/cCag																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362496	40362496	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	360	758	0	ENST00000293328.3:c.1700A>T	p.Asn567Ile	p.N567I	ENST00000293328	NM_012448.3	567	aAt/aTt																																																																														
CARM1	10498	MSKCC	GRCh37	19	11015647	11015647	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	297	717	0	ENST00000327064.4:c.241A>T	p.Lys81Ter	p.K81*	ENST00000327064	NM_199141.1	81	Aag/Tag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918169	50918169	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	225	1033	0	ENST00000440232.2:c.2486T>C	p.Leu829Pro	p.L829P	ENST00000440232	NM_002691.3	829	cTg/cCg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131291	202131291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	398	583	0	ENST00000358485.4:c.259G>T	p.Asp87Tyr	p.D87Y	ENST00000358485	NM_001080125.1	87	Gac/Tac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306685	41306685	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	208	909	0	ENST00000373198.4:c.974T>A	p.Val325Glu	p.V325E	ENST00000373198	NM_133170.3	325	gTg/gAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732947	30732947	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	229	516	0	ENST00000359013.4:c.1635C>A	p.Cys545Ter	p.C545*	ENST00000359013	NM_001024847.2	545	tgC/tgA																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138382852	138382852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	188	592	0	ENST00000289153.2:c.2692A>G	p.Ile898Val	p.I898V	ENST00000289153	NM_006219.2	898	Att/Gtt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176687097	176687097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	139	648	0	ENST00000439151.2:c.5074C>T	p.His1692Tyr	p.H1692Y	ENST00000439151	NM_022455.4	1692	Cac/Tac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707755	176707755	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	246	647	1	ENST00000439151.2:c.5812A>T	p.Lys1938Ter	p.K1938*	ENST00000439151	NM_022455.4	1938	Aag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528619	157528619	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	156	926	0	ENST00000346085.5:c.6344T>G	p.Leu2115Ter	p.L2115*	ENST00000346085	NM_020732.3	2115	tTa/tGa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129929	69129929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	173	518	1	ENST00000288368.4:c.4683G>T	p.Gln1561His	p.Q1561H	ENST00000288368	NM_024870.2	1561	caG/caT																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981522	70981522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	205	1113	1	ENST00000276594.2:c.574C>T	p.Pro192Ser	p.P192S	ENST00000276594	NM_024504.3	192	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633390	8633390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	233	636	0	ENST00000356435.5:c.279G>T	p.Glu93Asp	p.E93D	ENST00000356435		93	gaG/gaT																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0039906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	92	529	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0039906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	22	400	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55955592	55955592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs560674167		P-0039906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	47	394	2	ENST00000263923.4:c.3353G>A	p.Arg1118Gln	p.R1118Q	ENST00000263923	NM_002253.2	1118	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578473	7578473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064795860		P-0039906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	154	720	1	ENST00000269305.4:c.457C>T	p.Pro153Ser	p.P153S	ENST00000269305	NM_001126112.2	153	Ccc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112175799	112175799	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	20	230	0	ENST00000257430.4:c.4508C>G	p.Ser1503Ter	p.S1503*	ENST00000257430	NM_000038.5	1503	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	373	541	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	365	379	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	116	403	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	237	367	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858493	9858493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765257420		P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	134	466	1	ENST00000330684.3:c.2908C>T	p.Arg970Trp	p.R970W	ENST00000330684	NM_001134407.1	970	Cgg/Tgg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	360001	360001	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs771361430		P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	156	583	0	ENST00000262320.3:c.1088A>G	p.Asn363Ser	p.N363S	ENST00000262320	NM_003502.3	363	aAt/aGt																																																																														
APC	324	MSKCC	GRCh37	5	112175641	112175641	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	100	306	0	ENST00000257430.4:c.4350del	p.Glu1451LysfsTer22	p.E1451Kfs*22	ENST00000257430	NM_000038.5	1450	cgA/cg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873545	151873545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	493	512	0	ENST00000262189.6:c.8993C>T	p.Ser2998Leu	p.S2998L	ENST00000262189	NM_170606.2	2998	tCa/tTa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98222017	98222017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	145	423	0	ENST00000331920.6:c.2752G>A	p.Ala918Thr	p.A918T	ENST00000331920	NM_000264.3	918	Gct/Act																																																																														
AR	367	MSKCC	GRCh37	X	66863193	66863193	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	58	260	0	ENST00000374690.3:c.1712A>C	p.His571Pro	p.H571P	ENST00000374690	NM_000044.3	571	cAc/cCc																																																																														
TET1	80312	MSKCC	GRCh37	10	70442723	70442723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	39	339	0	ENST00000373644.4:c.5045G>T	p.Ser1682Ile	p.S1682I	ENST00000373644	NM_030625.2	1682	aGc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0039962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	318	585	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
TEK	7010	MSKCC	GRCh37	9	27190655	27190655	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1334811		P-0039962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	64	378	1	ENST00000380036.4:c.1456G>A	p.Val486Ile	p.V486I	ENST00000380036	NM_000459.3	486	Gtt/Att																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0039962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	286	313	0	ENST00000256078.4:c.180_181inv	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggGAaa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125499290	125499290	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	148	239	0	ENST00000428830.2:c.359A>T	p.Tyr120Phe	p.Y120F	ENST00000428830	NM_001114121.2	120	tAt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	57	400	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482843	67482843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	57	534	0	ENST00000327367.4:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000327367	NM_005902.3	416	tCc/tTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510850	120510850	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	55	284	0	ENST00000256646.2:c.1114C>G	p.Leu372Val	p.L372V	ENST00000256646	NM_024408.3	372	Ctg/Gtg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138375009	138375009	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	48	359	0	ENST00000289153.2:c.3050C>G	p.Ser1017Ter	p.S1017*	ENST00000289153	NM_006219.2	1017	tCa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0040031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	28	384	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443864	52443864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	52	778	1	ENST00000460680.1:c.31G>A	p.Asp11Asn	p.D11N	ENST00000460680	NM_004656.3	11	Gac/Aac																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375220	15375220	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs913018426		P-0040031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	34	496	0	ENST00000263377.2:c.1207A>G	p.Ile403Val	p.I403V	ENST00000263377	NM_058243.2	403	Atc/Gtc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944665	32944665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	139	375	0	ENST00000380152.3:c.8458del	p.Val2820Ter	p.V2820*	ENST00000380152		2820	Gta/ta																																																																														
NF1	4763	MSKCC	GRCh37	17	29556087	29556139	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGTGAGTGGAGGAGGATCCATAGATTTGTCTGACACAGACTCCCTACAGG	CCATGTGAGTGGAGGAGGATCCATAGATTTGTCTGACACAGACTCCCTACAGG	-			P-0040119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	44	164	0	ENST00000358273.4:c.2454_2506del	p.His819MetfsTer28	p.H819Mfs*28	ENST00000358273	NM_001042492.2	818	tcCCATGTGAGTGGAGGAGGATCCATAGATTTGTCTGACACAGACTCCCTACAGGaa/tcaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106156867	106156867	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	92	372	0	ENST00000380013.4:c.1768C>G	p.Leu590Val	p.L590V	ENST00000380013	NM_001127208.2	590	Ctt/Gtt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	209	340	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913485		P-0040139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	802	819	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
ATM	472	MSKCC	GRCh37	11	108235840	108235840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	221	495	1	ENST00000278616.4:c.8882C>T	p.Thr2961Ile	p.T2961I	ENST00000278616	NM_000051.3	2961	aCc/aTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632653	3632653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	404	828	2	ENST00000294008.3:c.5195G>T	p.Gly1732Val	p.G1732V	ENST00000294008	NM_032444.2	1732	gGt/gTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808921	3808921	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	348	724	2	ENST00000262367.5:c.3303del	p.Tyr1102IlefsTer14	p.Y1102Ifs*14	ENST00000262367	NM_004380.2	1101	ctG/ct																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197719	123197720	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	58	241	0	ENST00000218089.9:c.1844dup	p.Ile616AspfsTer19	p.I616Dfs*19	ENST00000218089	NM_001042749.1	615	cag/cAag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040152-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			145	105	377	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0040152-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	184	739	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221161	5221161	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575201235		P-0040152-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	203	914	3	ENST00000357368.4:c.3305G>A	p.Arg1102His	p.R1102H	ENST00000357368	NM_002850.3	1102	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573556	48573556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040152-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			74	35	271	0	ENST00000342988.3:c.140T>C	p.Leu47Pro	p.L47P	ENST00000342988	NM_005359.5	47	cTg/cCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830786	72830786	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040152-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	156	751	0	ENST00000268489.5:c.5795T>A	p.Leu1932His	p.L1932H	ENST00000268489	NM_006885.3	1932	cTc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974687	21974688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCGG			P-0040152-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	143	569	0	ENST00000304494.5:c.139_140insCCGA	p.Arg47ThrfsTer74	p.R47Tfs*74	ENST00000304494	NM_000077.4	47	agg/aCCGAgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974687	21974688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCGG			P-0040152-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	143	569	0	ENST00000304494.5:c.139_140insCCGA	p.Arg47ThrfsTer74	p.R47Tfs*74	ENST00000304494	NM_000077.4	47	agg/aCCGAgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	82	300	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913399		P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	105	282	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	197	401	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44732912	44732912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	59	253	0	ENST00000377967.4:c.115C>T	p.Pro39Ser	p.P39S	ENST00000377967	NM_021140.2	39	Ccc/Tcc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161690	56161690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	70	369	0	ENST00000399503.3:c.1187G>A	p.Arg396His	p.R396H	ENST00000399503	NM_005921.1	396	cGt/cAt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222467	2222467	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs768713660		P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	218	575	0	ENST00000326181.6:c.661G>A	p.Asp221Asn	p.D221N	ENST00000326181	NM_032271.2	221	Gac/Aac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573531	48573531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	38	274	0	ENST00000342988.3:c.115G>C	p.Ala39Pro	p.A39P	ENST00000342988	NM_005359.5	39	Gca/Cca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277910	41277936	+	inframe_deletion	In_Frame_Del	DEL	AGGAAGCTGCAGAAGCTATTGAAGCTG	AGGAAGCTGCAGAAGCTATTGAAGCTG	-			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	106	363	0	ENST00000349496.5:c.1877_1903del	p.Glu626_Glu634del	p.E626_E634del	ENST00000349496	NM_001904.3	625	aAGGAAGCTGCAGAAGCTATTGAAGCTGag/aag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651520	52651520	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	69	384	0	ENST00000394830.3:c.1576T>G	p.Leu526Val	p.L526V	ENST00000394830	NM_018313.4	526	Tta/Gta																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576519	67576519	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	56	257	0	ENST00000274335.5:c.798A>C	p.Glu266Asp	p.E266D	ENST00000274335		266	gaA/gaC																																																																														
PARK2	0	MSKCC	GRCh37	6	162683791	162683791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	36	273	0	ENST00000366898.1:c.178G>T	p.Asp60Tyr	p.D60Y	ENST00000366898	NM_004562.2	60	Gac/Tac																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87636245	87636245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	461	450	0	ENST00000277120.3:c.2410G>A	p.Gly804Arg	p.G804R	ENST00000277120		804	Ggg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	177	692	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793008	33793010	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0040326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	11	121	0	ENST00000498907.2:c.311_313del	p.Gly104del	p.G104del	ENST00000498907	NM_004364.3	104	gGCGac/gac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879448	151879448	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	126	409	1	ENST00000262189.6:c.5497C>T	p.Gln1833Ter	p.Q1833*	ENST00000262189	NM_170606.2	1833	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258203	16258203	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763428386		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	231	271	0	ENST00000375759.3:c.5468G>A	p.Arg1823His	p.R1823H	ENST00000375759	NM_015001.2	1823	cGt/cAt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264495	16264495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	242	300	0	ENST00000375759.3:c.10698G>T	p.Arg3566Ser	p.R3566S	ENST00000375759	NM_015001.2	3566	agG/agT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	175	189	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099936	27099936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773264329		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	253	344	1	ENST00000324856.7:c.3815C>T	p.Ala1272Val	p.A1272V	ENST00000324856	NM_006015.4	1272	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	177	262	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	240	285	2	ENST00000262741.5:c.883del	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156836707	156836707	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	299	333	0	ENST00000524377.1:c.365T>C	p.Leu122Pro	p.L122P	ENST00000524377	NM_002529.3	122	cTc/cCc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	80	129	0	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136051	64136051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	214	279	0	ENST00000334205.4:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000334205	NM_003942.2	438	Gca/Aca																																																																														
PAK1	5058	MSKCC	GRCh37	11	77043861	77043861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	261	307	0	ENST00000356341.3:c.1465A>G	p.Lys489Glu	p.K489E	ENST00000356341	NM_002576.4	489	Aag/Gag																																																																														
PGR	5241	MSKCC	GRCh37	11	100998688	100998688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	236	323	0	ENST00000325455.5:c.1114G>A	p.Asp372Asn	p.D372N	ENST00000325455	NM_001202474.3	372	Gac/Aac																																																																														
PGR	5241	MSKCC	GRCh37	11	100999603	100999603	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	263	364	0	ENST00000325455.5:c.199del	p.Gln67ArgfsTer99	p.Q67Rfs*99	ENST00000325455	NM_001202474.3	67	Cag/ag																																																																														
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	70	195	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427309	49427309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs566069597		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	189	268	0	ENST00000301067.7:c.11179C>T	p.Arg3727Cys	p.R3727C	ENST00000301067	NM_003482.3	3727	Cgt/Tgt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111884755	111884755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772497470		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	218	262	0	ENST00000341259.2:c.844C>T	p.Arg282Trp	p.R282W	ENST00000341259	NM_005475.2	282	Cgg/Tgg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562552	21562552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	34	56	0	ENST00000382592.4:c.1367C>T	p.Thr456Met	p.T456M	ENST00000382592	NM_014572.2	456	aCg/aTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42054027	42054027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1384151590		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	75	154	1	ENST00000219905.7:c.7489C>T	p.Arg2497Trp	p.R2497W	ENST00000219905	NM_001164273.1	2497	Cgg/Tgg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500606	99500606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs909142461		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	176	266	0	ENST00000268035.6:c.4039G>A	p.Ala1347Thr	p.A1347T	ENST00000268035	NM_000875.3	1347	Gcc/Acc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343595	343595	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	257	313	0	ENST00000262320.3:c.2079del	p.Thr694ProfsTer11	p.T694Pfs*11	ENST00000262320	NM_003502.3	693	ccC/cc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	160	200	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020478	14020478	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377014538		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	129	191	0	ENST00000311895.7:c.449G>A	p.Arg150His	p.R150H	ENST00000311895	NM_005236.2	150	cGc/cAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348899	89348899	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	298	424	1	ENST00000301030.4:c.4051A>G	p.Arg1351Gly	p.R1351G	ENST00000301030	NM_001256183.1	1351	Aga/Gga																																																																														
FANCA	2175	MSKCC	GRCh37	16	89857933	89857933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780135578		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	208	242	0	ENST00000389301.3:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000389301	NM_000135.2	413	Cgt/Tgt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	180	243	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
NF1	4763	MSKCC	GRCh37	17	29654820	29654820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786203416		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	96	159	1	ENST00000358273.4:c.5572G>A	p.Ala1858Thr	p.A1858T	ENST00000358273	NM_001042492.2	1858	Gca/Aca																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	160	295	2	ENST00000357654.3:c.1961del	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	251	351	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	250	348	0	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																																																														
MALT1	10892	MSKCC	GRCh37	18	56339057	56339058	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	45	60	0	ENST00000348428.3:c.186dup	p.Ser63GlufsTer18	p.S63Efs*18	ENST00000348428	NM_006785.3	61	gcg/gcGg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10251481	10251482	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	228	312	2	ENST00000340748.4:c.3450dup	p.Leu1151ValfsTer12	p.L1151Vfs*12	ENST00000340748		1150	-/G																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952243	17952243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	218	314	0	ENST00000458235.1:c.1097del	p.Pro366ArgfsTer99	p.P366Rfs*99	ENST00000458235	NM_000215.3	366	cCg/cg																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793082	33793082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	156	151	0	ENST00000498907.2:c.239A>G	p.Asp80Gly	p.D80G	ENST00000498907	NM_004364.3	80	gAc/gGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219700	36219700	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	236	302	0	ENST00000222270.7:c.4601del	p.Pro1534HisfsTer112	p.P1534Hfs*112	ENST00000222270	NM_014727.1	1533	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	268	392	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
CASP8	841	MSKCC	GRCh37	2	202131403	202131403	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	130	240	0	ENST00000358485.4:c.371T>C	p.Leu124Pro	p.L124P	ENST00000358485	NM_001080125.1	124	cTg/cCg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31394039	31394039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	29	196	0	ENST00000328111.2:c.2326A>G	p.Thr776Ala	p.T776A	ENST00000328111	NM_006892.3	776	Acc/Gcc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279864	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs578139784		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	99	198	4	ENST00000371998.3:c.3792_3794del	p.Gln1276del	p.Q1276del	ENST00000371998		1264	CAA/-																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72873690	72873690	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1217408412		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	35	180	0	ENST00000325599.8:c.612del	p.Phe204LeufsTer10	p.F204Lfs*10	ENST00000325599	NM_018130.2	204	ttT/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	67	175	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	222	319	2	ENST00000382895.3:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382895	NM_133330.2	1341	Ccc/cc																																																																														
TET2	54790	MSKCC	GRCh37	4	106197444	106197444	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1316795626		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	102	149	0	ENST00000380013.4:c.5777G>A	p.Arg1926His	p.R1926H	ENST00000380013	NM_001127208.2	1926	cGt/cAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542414	187542414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	111	204	0	ENST00000441802.2:c.5326G>A	p.Glu1776Lys	p.E1776K	ENST00000441802	NM_005245.3	1776	Gaa/Aaa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	98	160	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970914	79970915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1322666029		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	85	270	1	ENST00000265081.6:c.1148dup	p.Asn385GlnfsTer19	p.N385Qfs*19	ENST00000265081	NM_002439.4	380	-/A																																																																														
MSH3	4437	MSKCC	GRCh37	5	80160739	80160739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	122	233	0	ENST00000265081.6:c.3108G>T	p.Glu1036Asp	p.E1036D	ENST00000265081	NM_002439.4	1036	gaG/gaT																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564679	86564680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1425668686		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	201	307	0	ENST00000274376.6:c.416dup	p.Pro140SerfsTer18	p.P140Sfs*18	ENST00000274376	NM_002890.2	137	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112137078	112137078	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	114	156	0	ENST00000257430.4:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000257430	NM_000038.5	278	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	110	177	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
RAD50	10111	MSKCC	GRCh37	5	131944381	131944382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs748536322		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	29	105	2	ENST00000265335.6:c.2801dup	p.Asn934LysfsTer10	p.N934Kfs*10	ENST00000265335		931	-/A																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056466	26056466	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs760631461		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	76	129	0	ENST00000343677.2:c.191A>G	p.Lys64Arg	p.K64R	ENST00000343677	NM_005319.3	64	aAa/aGa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910346	29910346	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	206	351	0	ENST00000376809.5:c.19del	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000376809	NM_002116.7	6	Ccc/cc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910741	29910741	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs199474449		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	265	353	0	ENST00000376809.5:c.281A>G	p.Gln94Arg	p.Q94R	ENST00000376809	NM_002116.7	94	cAg/cGg																																																																														
STK19	8859	MSKCC	GRCh37	6	31940280	31940280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	239	291	0	ENST00000375331.2:c.422G>A	p.Gly141Asp	p.G141D	ENST00000375331	NM_004197.1	141	gGt/gAt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs753855314		P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	249	353	2	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	268	342	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70982082	70982082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	196	244	0	ENST00000276594.2:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000276594	NM_024504.3	5	cGg/cAg																																																																														
MYC	4609	MSKCC	GRCh37	8	128752893	128752893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	95	254	0	ENST00000377970.2:c.1054A>G	p.Ser352Gly	p.S352G	ENST00000377970	NM_002467.4	352	Agc/Ggc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0040355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	168	406	0	ENST00000220592.5:c.1804_1806dup	p.Pro602dup	p.P602dup	ENST00000220592	NM_012154.3	602	-/CCC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	207	383	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SDHB	6390	MSKCC	GRCh37	1	17349197	17349197	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	34	324	0	ENST00000375499.3:c.671A>T	p.Asp224Val	p.D224V	ENST00000375499	NM_003000.2	224	gAt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	41	418	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172272	99172272	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs374507988		P-0040495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	48	509	0	ENST00000074304.5:c.1837+1G>A		p.X613_splice	ENST00000074304	NM_001134224.1	613																																																																															
TP53	7157	MSKCC	GRCh37	17	7579442	7579443	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0040495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	102	812	0	ENST00000269305.4:c.243_244dup	p.Pro82HisfsTer42	p.P82Hfs*42	ENST00000269305	NM_001126112.2	82	ccg/cACcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577046	7577047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGGTGA			P-0040554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	421	527	0	ENST00000269305.4:c.885_891dup	p.Glu298SerfsTer10	p.E298Sfs*10	ENST00000269305	NM_001126112.2	297	-/TCACCAC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	244	438	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	446	753	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	131	515	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106238	27106238	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	410	700	0	ENST00000324856.7:c.5850del	p.Asn1951ThrfsTer5	p.N1951Tfs*5	ENST00000324856	NM_006015.4	1950	cGg/cg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740258	162740258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	72	490	0	ENST00000367921.3:c.1460T>C	p.Leu487Pro	p.L487P	ENST00000367921	NM_006182.2	487	cTg/cCg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175729	176175729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	194	853	0	ENST00000367669.3:c.386A>G	p.Asp129Gly	p.D129G	ENST00000367669	NM_022457.5	129	gAc/gGc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910797	32910797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	230	426	1	ENST00000380152.3:c.2305C>A	p.Leu769Ile	p.L769I	ENST00000380152		769	Ctt/Att																																																																														
APC	324	MSKCC	GRCh37	5	112173383	112173383	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1060503279		P-0040572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	78	349	0	ENST00000257430.4:c.2092T>G	p.Leu698Val	p.L698V	ENST00000257430	NM_000038.5	698	Tta/Gta																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517484	176517484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754036845		P-0040611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	52	701	0	ENST00000292408.4:c.185G>A	p.Arg62His	p.R62H	ENST00000292408	NM_213647.1	62	cGt/cAt																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15838365	15838365	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	23	194	0	ENST00000307771.7:c.863A>G	p.Asn288Ser	p.N288S	ENST00000307771	NM_005089.3	288	aAc/aGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	128	352	0				ENST00000310581	NM_198253.2																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106508856	106508856	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376958957		P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	176	485	0	ENST00000359195.3:c.850G>A	p.Glu284Lys	p.E284K	ENST00000359195	NM_002649.2	284	Gaa/Aaa																																																																														
WT1	7490	MSKCC	GRCh37	11	32414251	32414251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121907910		P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	188	410	0	ENST00000332351.3:c.1300C>T	p.Arg434Cys	p.R434C	ENST00000332351	NM_024426.4	434	Cgt/Tgt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376107	118376107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	174	464	1	ENST00000534358.1:c.9500C>T	p.Ser3167Phe	p.S3167F	ENST00000534358	NM_005933.3	3167	tCc/tTc																																																																														
PARK2	0	MSKCC	GRCh37	6	162864404	162864404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	195	452	0	ENST00000366898.1:c.109C>T	p.Pro37Ser	p.P37S	ENST00000366898	NM_004562.2	37	Ccg/Tcg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472559	88472559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	140	536	0	ENST00000360948.2:c.1996G>A	p.Gly666Ser	p.G666S	ENST00000360948	NM_001012338.2	666	Ggt/Agt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843748	156843748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs537263008		P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	273	827	0	ENST00000524377.1:c.1174C>T	p.Pro392Ser	p.P392S	ENST00000524377	NM_002529.3	392	Cct/Tct																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50481167	50481167	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	71	384	0	ENST00000394963.4:c.553T>C	p.Phe185Leu	p.F185L	ENST00000394963	NM_003076.4	185	Ttc/Ctc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112940024	112940024	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1253971623		P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	276	590	0	ENST00000351677.2:c.1676C>G	p.Pro559Arg	p.P559R	ENST00000351677	NM_002834.3	559	cCt/cGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29483101	29483123	+	frameshift_variant	Frame_Shift_Del	DEL	TTATAAGCGGCCTCACTACTATT	TTATAAGCGGCCTCACTACTATT	-			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	70	407	1	ENST00000358273.4:c.164_186del	p.Ile55LysfsTer4	p.I55Kfs*4	ENST00000358273	NM_001042492.2	54	gTTATAAGCGGCCTCACTACTATT/g																																																																														
NF1	4763	MSKCC	GRCh37	17	29585473	29585473	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	104	357	0	ENST00000358273.4:c.4285A>T	p.Lys1429Ter	p.K1429*	ENST00000358273	NM_001042492.2	1429	Aaa/Taa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349926	15349926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	230	624	0	ENST00000263377.2:c.3726G>T	p.Lys1242Asn	p.K1242N	ENST00000263377	NM_058243.2	1242	aaG/aaT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228965	36228965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	229	634	0	ENST00000222270.7:c.7745C>T	p.Ser2582Leu	p.S2582L	ENST00000222270	NM_014727.1	2582	tCa/tTa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867579	45867579	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	255	736	0	ENST00000391945.4:c.729C>A	p.Cys243Ter	p.C243*	ENST00000391945	NM_000400.3	243	tgC/tgA																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919917	50919917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	226	672	0	ENST00000440232.2:c.3004C>A	p.Leu1002Ile	p.L1002I	ENST00000440232	NM_002691.3	1002	Ctc/Atc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47606191	47606191	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs757963724		P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	25	280	0	ENST00000263735.4:c.655G>A	p.Asp219Asn	p.D219N	ENST00000263735	NM_002354.2	219	Gat/Aat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198268440	198268440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	36	412	0	ENST00000335508.6:c.1588C>T	p.Pro530Ser	p.P530S	ENST00000335508	NM_012433.2	530	Cct/Tct																																																																														
TOP1	7150	MSKCC	GRCh37	20	39751881	39751881	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	173	394	0	ENST00000361337.2:c.2242C>T	p.Gln748Ter	p.Q748*	ENST00000361337	NM_003286.2	748	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877379	40877379	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763387029		P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	179	534	0	ENST00000373198.4:c.2317C>T	p.Leu773Phe	p.L773F	ENST00000373198	NM_133170.3	773	Ctc/Ttc																																																																														
MST1	4485	MSKCC	GRCh37	3	49721567	49721567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	120	508	0	ENST00000449682.2:c.2072G>A	p.Gly691Glu	p.G691E	ENST00000449682	NM_020998.3	691	gGa/gAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178943785	178943785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	105	305	0	ENST00000263967.3:c.2452C>T	p.Arg818Cys	p.R818C	ENST00000263967	NM_006218.2	818	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1271312	1271312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	107	680	0	ENST00000310581.5:c.2390C>T	p.Ser797Phe	p.S797F	ENST00000310581	NM_198253.2	797	tCc/tTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665362	176665362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	176	337	0	ENST00000439151.2:c.4046C>T	p.Ala1349Val	p.A1349V	ENST00000439151	NM_022455.4	1349	gCt/gTt																																																																														
SESN1	27244	MSKCC	GRCh37	6	109315715	109315715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	194	514	0	ENST00000436639.2:c.1070C>T	p.Ala357Val	p.A357V	ENST00000436639	NM_014454.2	357	gCt/gTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117645515	117645515	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	183	492	0	ENST00000368508.3:c.5621T>C	p.Val1874Ala	p.V1874A	ENST00000368508	NM_002944.2	1874	gTt/gCt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519742		P-0040651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	165	657	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441424	52441443	+	frameshift_variant	Frame_Shift_Del	DEL	CTATTATGGGCCTTGGCCAA	CTATTATGGGCCTTGGCCAA	-			P-0040651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	115	426	0	ENST00000460680.1:c.409_428del	p.Leu137ProfsTer11	p.L137Pfs*11	ENST00000460680	NM_004656.3	137	TTGGCCAAGGCCCATAATAGc/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587781642		P-0040803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	307	765	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946342	71946342	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0040803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	133	867	0	ENST00000298229.2:c.2506G>T	p.Glu836Ter	p.E836*	ENST00000298229	NM_001567.3	836	Gag/Tag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652239	36652239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	92	659	2	ENST00000244741.5:c.361C>A	p.Pro121Thr	p.P121T	ENST00000244741	NM_000389.4	121	Cct/Act																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246113	41246113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064794100		P-0040817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	196	696	0	ENST00000357654.3:c.1435G>A	p.Glu479Lys	p.E479K	ENST00000357654	NM_007294.3	479	Gaa/Aaa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821086	32821086	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2228108		P-0040817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	374	1115	0	ENST00000354258.4:c.508C>T	p.Leu170Phe	p.L170F	ENST00000354258	NM_000593.5	170	Ctt/Ttt																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868444	117868444	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	150	647	0	ENST00000297338.2:c.898G>C	p.Glu300Gln	p.E300Q	ENST00000297338	NM_006265.2	300	Gag/Cag																																																																														
RXRA	6256	MSKCC	GRCh37	9	137321065	137321065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	155	738	0	ENST00000481739.1:c.1022G>A	p.Gly341Glu	p.G341E	ENST00000481739	NM_002957.4	341	gGg/gAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409053	139409053	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	174	1080	0	ENST00000277541.6:c.2116G>T	p.Glu706Ter	p.E706*	ENST00000277541	NM_017617.3	706	Gag/Tag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139411748	139411748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	104	942	0	ENST00000277541.6:c.1531G>C	p.Glu511Gln	p.E511Q	ENST00000277541	NM_017617.3	511	Gag/Cag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929578	44929578	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	94	383	0	ENST00000377967.4:c.2678C>G	p.Ser893Ter	p.S893*	ENST00000377967	NM_021140.2	893	tCa/tGa																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652290	48652290	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs782391440		P-0040817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	182	1101	0	ENST00000376670.3:c.961C>G	p.Leu321Val	p.L321V	ENST00000376670	NM_002049.3	321	Ctg/Gtg																																																																														
AR	367	MSKCC	GRCh37	X	66766446	66766447	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0040817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	95	499	1	ENST00000374690.3:c.1458_1459delinsTA	p.Pro487Thr	p.P487T	ENST00000374690	NM_000044.3	486	ccCCct/ccTAct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	44	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	23	269	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	127	886	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2972186	2972186	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748468563		P-0040856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	64	592	0	ENST00000396946.4:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000396946	NM_032415.4	518	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175212	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	10	213	0	ENST00000257430.4:c.3924del	p.Glu1309LysfsTer12	p.E1309Kfs*12	ENST00000257430	NM_000038.5	1307	atA/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101420	27101420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	77	578	0	ENST00000324856.7:c.4702C>G	p.Pro1568Ala	p.P1568A	ENST00000324856	NM_006015.4	1568	Cct/Gct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828846	72828846	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	46	589	0	ENST00000268489.5:c.7735C>G	p.Pro2579Ala	p.P2579A	ENST00000268489	NM_006885.3	2579	Ccc/Gcc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902679	50902679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	84	1029	0	ENST00000440232.2:c.254C>A	p.Pro85Gln	p.P85Q	ENST00000440232	NM_002691.3	85	cCa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	108	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988489	36988489	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	56	551	0	ENST00000354822.5:c.164A>T	p.Lys55Met	p.K55M	ENST00000354822	NM_001079668.2	55	aAg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218852	36218852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs549211601		P-0040919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	197	672	3	ENST00000222270.7:c.4463G>A	p.Arg1488Gln	p.R1488Q	ENST00000222270	NM_014727.1	1488	cGg/cAg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198283292	198283292	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	150	496	0	ENST00000335508.6:c.436A>C	p.Lys146Gln	p.K146Q	ENST00000335508	NM_012433.2	146	Aaa/Caa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927405	178927405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	95	361	0	ENST00000263967.3:c.1168G>A	p.Asp390Asn	p.D390N	ENST00000263967	NM_006218.2	390	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112151195	112151215	+	frameshift_variant	Frame_Shift_Del	DEL	TCAACTACACGAATGGACCAT	TCAACTACACGAATGGACCAT	ACCAC			P-0040919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	71	383	1	ENST00000257430.4:c.838_858delinsACCAC	p.Ser280ThrfsTer8	p.S280Tfs*8	ENST00000257430	NM_000038.5	280	TCAACTACACGAATGGACCAT/ACCAC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	40	340	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0041051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	144	516	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	110	519	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0041051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	130	308	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928225	178928225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	125	309	0	ENST00000263967.3:c.1411C>G	p.Pro471Ala	p.P471A	ENST00000263967	NM_006218.2	471	Cca/Gca																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843386	3843386	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0041051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	30	237	0	ENST00000262367.5:c.1216+1del		p.X406_splice	ENST00000262367	NM_004380.2	406																																																																															
YES1	7525	MSKCC	GRCh37	18	742970	742971	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0041051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	114	301	0	ENST00000314574.4:c.1007_1008del	p.Tyr336CysfsTer5	p.Y336Cfs*5	ENST00000314574	NM_005433.3	336	tAT/t																																																																														
BRD4	23476	MSKCC	GRCh37	19	15378245	15378245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	43	336	0	ENST00000263377.2:c.541C>T	p.Arg181Cys	p.R181C	ENST00000263377	NM_058243.2	181	Cgt/Tgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860666	151860667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	104	359	0	ENST00000262189.6:c.9995dup	p.Leu3332PhefsTer19	p.L3332Ffs*19	ENST00000262189	NM_170606.2	3332	tta/ttTa																																																																														
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs137852578		P-0041059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	64	184	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
MED12	9968	MSKCC	GRCh37	X	70349274	70349274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	190	348	0	ENST00000374080.3:c.3686T>C	p.Val1229Ala	p.V1229A	ENST00000374080		1229	gTa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0041119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	291	585	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0041119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	477	496	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404813	404813	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368604945		P-0041119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	300	454	0	ENST00000399788.2:c.4381G>A	p.Glu1461Lys	p.E1461K	ENST00000399788	NM_001042603.1	1461	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630639	187630639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	285	611	0	ENST00000441802.2:c.343C>A	p.His115Asn	p.H115N	ENST00000441802	NM_005245.3	115	Cac/Aac																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	166	585	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217225	11217225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	32	611	1	ENST00000361445.4:c.4453G>A	p.Glu1485Lys	p.E1485K	ENST00000361445	NM_004958.3	1485	Gag/Aag																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276387	115276387	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779453730		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	195	575	0	ENST00000438362.2:c.941C>T	p.Thr314Ile	p.T314I	ENST00000438362	NM_001242891.1	314	aCc/aTc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165970	118165970	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1422217522		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	171	501	0	ENST00000369448.3:c.480G>T	p.Lys160Asn	p.K160N	ENST00000369448	NM_017709.3	160	aaG/aaT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462975	120462975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1435723160		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	172	575	1	ENST00000256646.2:c.5356C>T	p.Arg1786Ter	p.R1786*	ENST00000256646	NM_024408.3	1786	Cga/Tga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849887	156849887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759190964		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	257	937	0	ENST00000524377.1:c.2143G>A	p.Val715Met	p.V715M	ENST00000524377	NM_002529.3	715	Gtg/Atg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176153796	176153796	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	124	345	0	ENST00000367669.3:c.440A>G	p.Tyr147Cys	p.Y147C	ENST00000367669	NM_022457.5	147	tAc/tGc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193104712	193104712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	126	358	0	ENST00000367435.3:c.416G>A	p.Arg139Gln	p.R139Q	ENST00000367435	NM_024529.4	139	cGa/cAa																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246493799	246493799	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	154	340	0	ENST00000388985.4:c.377T>G	p.Phe126Cys	p.F126C	ENST00000388985		126	tTt/tGt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115975	8115975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	127	388	0	ENST00000346208.3:c.1321G>A	p.Ala441Thr	p.A441T	ENST00000346208		441	Gcc/Acc																																																																														
RET	5979	MSKCC	GRCh37	10	43619124	43619124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	199	588	0	ENST00000355710.3:c.2807C>A	p.Ser936Tyr	p.S936Y	ENST00000355710	NM_020975.4	936	tCt/tAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	114	215	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690835	89690835	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs876661177		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	132	362	0	ENST00000371953.3:c.242T>G	p.Phe81Cys	p.F81C	ENST00000371953	NM_000314.4	81	tTt/tGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	128	456	0	ENST00000371953.3:c.376G>A	p.Ala126Thr	p.A126T	ENST00000371953	NM_000314.4	126	Gct/Act																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112769557	112769557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	235	731	0	ENST00000369452.4:c.1509G>T	p.Glu503Asp	p.E503D	ENST00000369452	NM_007373.3	503	gaG/gaT																																																																														
WT1	7490	MSKCC	GRCh37	11	32414253	32414253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	219	492	0	ENST00000332351.3:c.1298C>A	p.Ser433Tyr	p.S433Y	ENST00000332351	NM_024426.4	433	tCt/tAt																																																																														
PAK1	5058	MSKCC	GRCh37	11	77069944	77069944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	42	530	1	ENST00000356341.3:c.596C>A	p.Ser199Tyr	p.S199Y	ENST00000356341	NM_002576.4	199	tCt/tAt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94203640	94203640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	67	285	0	ENST00000323929.3:c.1014G>T	p.Glu338Asp	p.E338D	ENST00000323929	NM_005591.3	338	gaG/gaT																																																																														
ATM	472	MSKCC	GRCh37	11	108143321	108143321	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	131	414	0	ENST00000278616.4:c.3140A>C	p.Lys1047Thr	p.K1047T	ENST00000278616	NM_000051.3	1047	aAa/aCa																																																																														
ATM	472	MSKCC	GRCh37	11	108168100	108168100	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	19	338	0	ENST00000278616.4:c.4996G>T	p.Glu1666Ter	p.E1666*	ENST00000278616	NM_000051.3	1666	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108178711	108178711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	92	250	1	ENST00000278616.4:c.5762G>A	p.Arg1921Lys	p.R1921K	ENST00000278616	NM_000051.3	1921	aGa/aAa																																																																														
ATM	472	MSKCC	GRCh37	11	108186743	108186743	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3218670		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	172	454	0	ENST00000278616.4:c.6101G>A	p.Arg2034Gln	p.R2034Q	ENST00000278616	NM_000051.3	2034	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118370029	118370029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	19	289	1	ENST00000534358.1:c.5973G>T	p.Glu1991Asp	p.E1991D	ENST00000534358	NM_005933.3	1991	gaG/gaT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372513	118372513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782124549		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	40	660	0	ENST00000534358.1:c.6446G>A	p.Arg2149Gln	p.R2149Q	ENST00000534358	NM_005933.3	2149	cGa/cAa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416748	416748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	27	435	0	ENST00000399788.2:c.3802G>A	p.Glu1268Lys	p.E1268K	ENST00000399788	NM_001042603.1	1268	Gaa/Aaa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	422312	422312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	126	630	1	ENST00000399788.2:c.2946G>T	p.Lys982Asn	p.K982N	ENST00000399788	NM_001042603.1	982	aaG/aaT																																																																														
KDM5A	5927	MSKCC	GRCh37	12	493204	493204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	142	503	0	ENST00000399788.2:c.359T>C	p.Leu120Ser	p.L120S	ENST00000399788	NM_001042603.1	120	tTg/tCg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435508	18435508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	102	295	0	ENST00000266497.5:c.493C>A	p.His165Asn	p.H165N	ENST00000266497		165	Cat/Aat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552635	18552635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	171	600	0	ENST00000266497.5:c.2046C>A	p.Phe682Leu	p.F682L	ENST00000266497		682	ttC/ttA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415845	49415845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	140	457	0	ENST00000301067.7:c.16502G>A	p.Arg5501Gln	p.R5501Q	ENST00000301067	NM_003482.3	5501	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416114	49416114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	118	548	0	ENST00000301067.7:c.16361G>A	p.Arg5454Gln	p.R5454Q	ENST00000301067	NM_003482.3	5454	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416118	49416118	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	121	510	1	ENST00000301067.7:c.16357T>C	p.Phe5453Leu	p.F5453L	ENST00000301067	NM_003482.3	5453	Ttc/Ctc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865826	57865826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	128	674	0	ENST00000228682.2:c.3303C>A	p.Phe1101Leu	p.F1101L	ENST00000228682	NM_005269.2	1101	ttC/ttA																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145001	58145001	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772938517		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	39	763	0	ENST00000257904.6:c.343G>A	p.Glu115Lys	p.E115K	ENST00000257904	NM_000075.3	115	Gaa/Aaa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69218408	69218408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	170	496	0	ENST00000462284.1:c.500G>T	p.Arg167Ile	p.R167I	ENST00000462284	NM_002392.5	167	aGa/aTa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112919920	112919920	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	87	269	0	ENST00000351677.2:c.1135G>T	p.Glu379Ter	p.E379*	ENST00000351677	NM_002834.3	379	Gaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519943		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	189	745	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601310	28601310	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	192	455	0	ENST00000241453.7:c.2122G>T	p.Glu708Ter	p.E708*	ENST00000241453	NM_004119.2	708	Gaa/Taa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28602393	28602393	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753200838		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	141	489	0	ENST00000241453.7:c.1975A>G	p.Met659Val	p.M659V	ENST00000241453	NM_004119.2	659	Atg/Gtg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28919595	28919595	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs553261958		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	173	517	1	ENST00000282397.4:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000282397	NM_002019.4	781	cGa/cAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964148	28964148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	151	433	0	ENST00000282397.4:c.1754G>T	p.Arg585Ile	p.R585I	ENST00000282397	NM_002019.4	585	aGa/aTa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964205	28964206	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	108	342	0	ENST00000282397.4:c.1696dup	p.Met566AsnfsTer15	p.M566Nfs*15	ENST00000282397	NM_002019.4	566	atg/aAtg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906539	32906539	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	37	387	0	ENST00000380152.3:c.924T>G	p.Phe308Leu	p.F308L	ENST00000380152		308	ttT/ttG																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907011	32907011	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	138	486	0	ENST00000380152.3:c.1396A>C	p.Asn466His	p.N466H	ENST00000380152		466	Aat/Cat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913196	32913196	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs863224589		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	180	645	0	ENST00000380152.3:c.4704G>T	p.Lys1568Asn	p.K1568N	ENST00000380152		1568	aaG/aaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913525	32913525	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs28897733		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	170	490	0	ENST00000380152.3:c.5033A>C	p.Lys1678Thr	p.K1678T	ENST00000380152		1678	aAa/aCa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937591	32937591	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	198	573	0	ENST00000380152.3:c.8252T>G	p.Ile2751Ser	p.I2751S	ENST00000380152		2751	aTt/aGt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32945130	32945130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80359105		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	157	368	0	ENST00000380152.3:c.8525G>A	p.Arg2842His	p.R2842H	ENST00000380152		2842	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438352	110438352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	45	123	0	ENST00000375856.3:c.49G>T	p.Gly17Cys	p.G17C	ENST00000375856	NM_003749.2	17	Ggc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	41991104	41991104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	43	574	0	ENST00000219905.7:c.2057C>T	p.Ser686Phe	p.S686F	ENST00000219905	NM_001164273.1	686	tCt/tTt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43769818	43769818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	51	574	0	ENST00000382044.4:c.928G>A	p.Asp310Asn	p.D310N	ENST00000382044	NM_001141980.1	310	Gac/Aac																																																																														
TSC2	7249	MSKCC	GRCh37	16	2098655	2098655	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs766814650		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	234	689	1	ENST00000219476.3:c.39G>T	p.Glu13Asp	p.E13D	ENST00000219476	NM_000548.3	13	gaG/gaT																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647143	2647143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	38	561	0	ENST00000342085.4:c.1421G>A	p.Arg474Gln	p.R474Q	ENST00000342085	NM_002613.4	474	cGa/cAa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641493	23641493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	42	787	0	ENST00000261584.4:c.1982C>A	p.Pro661His	p.P661H	ENST00000261584	NM_024675.3	661	cCt/cAt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50788288	50788288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	278	615	0	ENST00000398568.2:c.866C>T	p.Ala289Val	p.A289V	ENST00000398568	NM_001042412.1	289	gCg/gTg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650710	67650710	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1243010179		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	263	666	0	ENST00000264010.4:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000264010	NM_006565.3	339	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821193	72821193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200911275		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	300	786	2	ENST00000268489.5:c.10982C>T	p.Ser3661Leu	p.S3661L	ENST00000268489	NM_006885.3	3661	tCg/tTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830931	72830931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	183	545	0	ENST00000268489.5:c.5650G>T	p.Glu1884Ter	p.E1884*	ENST00000268489	NM_006885.3	1884	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832072	72832072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	215	633	0	ENST00000268489.5:c.4509G>T	p.Gln1503His	p.Q1503H	ENST00000268489	NM_006885.3	1503	caG/caT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346961	89346961	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775491352		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	104	490	0	ENST00000301030.4:c.5989G>A	p.Ala1997Thr	p.A1997T	ENST00000301030	NM_001256183.1	1997	Gcg/Acg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350856	89350856	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	328	800	0	ENST00000301030.4:c.2094G>T	p.Glu698Asp	p.E698D	ENST00000301030	NM_001256183.1	698	gaG/gaT																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877154	89877154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	207	525	0	ENST00000389301.3:c.483C>A	p.Phe161Leu	p.F161L	ENST00000389301	NM_000135.2	161	ttC/ttA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	38	827	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	38	1043	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15952253	15952253	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767227910		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	275	735	1	ENST00000268712.3:c.6442G>A	p.Glu2148Lys	p.E2148K	ENST00000268712	NM_006311.3	2148	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049857	16049857	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs781575973		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	106	309	0	ENST00000268712.3:c.915A>C	p.Gln305His	p.Q305H	ENST00000268712	NM_006311.3	305	caA/caC																																																																														
NF1	4763	MSKCC	GRCh37	17	29497004	29497004	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781670		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	50	276	0	ENST00000358273.4:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000358273	NM_001042492.2	192	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29528084	29528084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	23	278	0	ENST00000358273.4:c.1092C>A	p.Phe364Leu	p.F364L	ENST00000358273	NM_001042492.2	364	ttC/ttA																																																																														
NF1	4763	MSKCC	GRCh37	17	29684380	29684380	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781791		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	169	411	0	ENST00000358273.4:c.7963C>A	p.Pro2655Thr	p.P2655T	ENST00000358273	NM_001042492.2	2655	Cct/Act																																																																														
RARA	5914	MSKCC	GRCh37	17	38504619	38504619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1240210247		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	235	825	2	ENST00000254066.5:c.230C>T	p.Ser77Leu	p.S77L	ENST00000254066	NM_000964.3	77	tCg/tTg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59871053	59871053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	139	363	0	ENST00000259008.2:c.1378G>T	p.Asp460Tyr	p.D460Y	ENST00000259008	NM_032043.2	460	Gat/Tat																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39567848	39567848	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	22	226	0	ENST00000262039.4:c.604G>T	p.Glu202Ter	p.E202*	ENST00000262039	NM_002647.2	202	Gaa/Taa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5229332	5229332	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1417612381		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	318	866	2	ENST00000357368.4:c.2371G>A	p.Glu791Lys	p.E791K	ENST00000357368	NM_002850.3	791	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7141795	7141795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149536206		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	227	761	2	ENST00000302850.5:c.2575C>T	p.His859Tyr	p.H859Y	ENST00000302850	NM_000208.2	859	Cat/Tat																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792263	33792263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	259	864	2	ENST00000498907.2:c.1058C>T	p.Ala353Val	p.A353V	ENST00000498907	NM_004364.3	353	gCc/gTc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793305	33793305	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	86	262	0	ENST00000498907.2:c.16T>G	p.Phe6Val	p.F6V	ENST00000498907	NM_004364.3	6	Ttc/Gtc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212215	36212215	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	283	856	1	ENST00000222270.7:c.1966G>T	p.Glu656Ter	p.E656*	ENST00000222270	NM_014727.1	656	Gaa/Taa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965416	25965416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	218	821	0	ENST00000435504.4:c.3790G>T	p.Asp1264Tyr	p.D1264Y	ENST00000435504		1264	Gat/Tat																																																																														
ALK	238	MSKCC	GRCh37	2	29606641	29606641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	176	619	1	ENST00000389048.3:c.1239C>A	p.Ser413Arg	p.S413R	ENST00000389048	NM_004304.4	413	agC/agA																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213223	39213223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	150	942	1	ENST00000402219.2:c.3744C>A	p.Phe1248Leu	p.F1248L	ENST00000402219	NM_005633.3	1248	ttC/ttA																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249941	39249941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	245	662	1	ENST00000402219.2:c.1628C>A	p.Ser543Tyr	p.S543Y	ENST00000402219	NM_005633.3	543	tCt/tAt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47705457	47705457	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	135	333	0	ENST00000233146.2:c.2257G>T	p.Gly753Ter	p.G753*	ENST00000233146	NM_000251.2	753	Gga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026606	48026606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1358771617		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	153	499	0	ENST00000234420.5:c.1484G>A	p.Arg495Gln	p.R495Q	ENST00000234420	NM_000179.2	495	cGa/cAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057520009		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	190	464	1	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719724	61719724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	229	651	0	ENST00000401558.2:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000401558	NM_003400.3	515	cGa/cAa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99137182	99137182	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	92	268	0	ENST00000074304.5:c.139G>T	p.Glu47Ter	p.E47*	ENST00000074304	NM_001134224.1	47	Gaa/Taa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622495	158622495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1316254232		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	199	526	0	ENST00000263640.3:c.1004G>A	p.Arg335Gln	p.R335Q	ENST00000263640	NM_001105.4	335	cGa/cAa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095761	178095761	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	134	360	0	ENST00000397062.3:c.1570G>T	p.Glu524Ter	p.E524*	ENST00000397062	NM_006164.4	524	Gaa/Taa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178129274	178129274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	192	452	0	ENST00000397062.3:c.31C>T	p.Leu11Phe	p.L11F	ENST00000397062	NM_006164.4	11	Ctc/Ttc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190738308	190738308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	130	307	0	ENST00000441310.2:c.2560C>A	p.Leu854Ile	p.L854I	ENST00000441310	NM_000534.4	854	Ctt/Att																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257737	198257737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	156	442	0	ENST00000335508.6:c.3715G>A	p.Val1239Ile	p.V1239I	ENST00000335508	NM_012433.2	1239	Gtt/Att																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198262785	198262785	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	52	442	1	ENST00000335508.6:c.3190G>T	p.Glu1064Ter	p.E1064*	ENST00000335508	NM_012433.2	1064	Gag/Tag																																																																														
CASP8	841	MSKCC	GRCh37	2	202131315	202131315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	184	540	0	ENST00000358485.4:c.283G>T	p.Glu95Ter	p.E95*	ENST00000358485	NM_001080125.1	95	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566733	212566733	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	130	336	0	ENST00000342788.4:c.1448A>C	p.Gln483Pro	p.Q483P	ENST00000342788	NM_005235.2	483	cAg/cCg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812293	212812293	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs569995088		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	149	384	2	ENST00000342788.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000342788	NM_005235.2	95	Cgt/Tgt																																																																														
BARD1	580	MSKCC	GRCh37	2	215657093	215657093	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1444375563		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	181	495	0	ENST00000260947.4:c.292A>C	p.Asn98His	p.N98H	ENST00000260947	NM_000465.2	98	Aat/Cat																																																																														
PAK7	0	MSKCC	GRCh37	20	9543547	9543547	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760772824		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	183	508	0	ENST00000353224.5:c.1607C>T	p.Thr536Ile	p.T536I	ENST00000353224	NM_177990.2	536	aCt/aTt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30946596	30946596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	146	337	0	ENST00000375687.4:c.18G>T	p.Lys6Asn	p.K6N	ENST00000375687	NM_015338.5	6	aaG/aaT																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376816	31376816	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	101	570	1	ENST00000328111.2:c.811G>A	p.Glu271Lys	p.E271K	ENST00000328111	NM_006892.3	271	Gag/Aag																																																																														
TOP1	7150	MSKCC	GRCh37	20	39728698	39728698	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	94	254	0	ENST00000361337.2:c.978A>C	p.Lys326Asn	p.K326N	ENST00000361337	NM_003286.2	326	aaA/aaC																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46266513	46266513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	36	348	0	ENST00000371998.3:c.2498G>T	p.Gly833Val	p.G833V	ENST00000371998		833	gGa/gTa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252865	36252865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060499616		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	142	429	0	ENST00000300305.3:c.497G>A	p.Arg166Gln	p.R166Q	ENST00000300305		166	cGa/cAa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24158958	24158958	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs142218902		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	242	687	0	ENST00000263121.7:c.630G>T	p.Glu210Asp	p.E210D	ENST00000263121	NM_003073.3	210	gaG/gaT																																																																														
MLH1	4292	MSKCC	GRCh37	3	37055937	37055937	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	124	347	1	ENST00000231790.2:c.692T>G	p.Ile231Ser	p.I231S	ENST00000231790	NM_000249.3	231	aTt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275019	41275019	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	58	424	0	ENST00000349496.5:c.1186-1G>T		p.X396_splice	ENST00000349496	NM_001904.3	396																																																																															
SETD2	29072	MSKCC	GRCh37	3	47061257	47061257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	165	428	0	ENST00000409792.3:c.7424G>T	p.Arg2475Ile	p.R2475I	ENST00000409792	NM_014159.6	2475	aGa/aTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164267	47164267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	131	374	1	ENST00000409792.3:c.1859G>A	p.Arg620Gln	p.R620Q	ENST00000409792	NM_014159.6	620	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165279	47165279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	26	379	0	ENST00000409792.3:c.847G>T	p.Asp283Tyr	p.D283Y	ENST00000409792	NM_014159.6	283	Gat/Tat																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436344	52436344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765539314		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	243	841	2	ENST00000460680.1:c.2150G>A	p.Arg717Gln	p.R717Q	ENST00000460680	NM_004656.3	717	cGg/cAg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597438	52597438	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	128	560	0	ENST00000394830.3:c.3872T>G	p.Phe1291Cys	p.F1291C	ENST00000394830	NM_018313.4	1291	tTt/tGt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1239654517		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	170	406	0	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																														
MITF	4286	MSKCC	GRCh37	3	69990420	69990420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	170	385	0	ENST00000352241.4:c.700G>A	p.Glu234Lys	p.E234K	ENST00000352241	NM_198159.2	234	Gaa/Aaa																																																																														
MITF	4286	MSKCC	GRCh37	3	70005661	70005661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	158	462	0	ENST00000352241.4:c.993G>T	p.Leu331Phe	p.L331F	ENST00000352241	NM_198159.2	331	ttG/ttT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448552	89448552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	200	568	0	ENST00000336596.2:c.1516G>A	p.Val506Ile	p.V506I	ENST00000336596	NM_005233.5	506	Gta/Ata																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89457270	89457270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	127	402	1	ENST00000336596.2:c.1751G>A	p.Gly584Asp	p.G584D	ENST00000336596	NM_005233.5	584	gGc/gAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960109	134960109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	194	703	0	ENST00000398015.3:c.2466G>T	p.Glu822Asp	p.E822D	ENST00000398015	NM_004441.4	822	gaG/gaT																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138426006	138426006	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755672708		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	155	413	0	ENST00000289153.2:c.1525G>A	p.Asp509Asn	p.D509N	ENST00000289153	NM_006219.2	509	Gat/Aat																																																																														
ATR	545	MSKCC	GRCh37	3	142238521	142238521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	70	269	1	ENST00000350721.4:c.4372C>A	p.Leu1458Ile	p.L1458I	ENST00000350721	NM_001184.3	1458	Cta/Ata																																																																														
ATR	545	MSKCC	GRCh37	3	142238542	142238542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148064542		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	133	300	0	ENST00000350721.4:c.4351C>T	p.Arg1451Trp	p.R1451W	ENST00000350721	NM_001184.3	1451	Cgg/Tgg																																																																														
ATR	545	MSKCC	GRCh37	3	142259876	142259876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	144	391	0	ENST00000350721.4:c.3451G>A	p.Ala1151Thr	p.A1151T	ENST00000350721	NM_001184.3	1151	Gcc/Acc																																																																														
ATR	545	MSKCC	GRCh37	3	142278200	142278200	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	236	574	0	ENST00000350721.4:c.1625A>G	p.Lys542Arg	p.K542R	ENST00000350721	NM_001184.3	542	aAa/aGa																																																																														
ATR	545	MSKCC	GRCh37	3	142279247	142279247	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	114	520	0	ENST00000350721.4:c.1399A>C	p.Lys467Gln	p.K467Q	ENST00000350721	NM_001184.3	467	Aaa/Caa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388201066		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	159	421	1	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	124	450	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191446	185191446	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756793616		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	289	864	0	ENST00000265026.3:c.2327C>T	p.Thr776Met	p.T776M	ENST00000265026	NM_004721.4	776	aCg/aTg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133597	55133597	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	185	613	0	ENST00000257290.5:c.901G>T	p.Glu301Ter	p.E301*	ENST00000257290	NM_006206.4	301	Gaa/Taa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133718	55133718	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	176	589	0	ENST00000257290.5:c.932-1G>A		p.X311_splice	ENST00000257290	NM_006206.4	311																																																																															
KIT	3815	MSKCC	GRCh37	4	55593395	55593395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	122	364	0	ENST00000288135.5:c.1552C>T	p.Pro518Ser	p.P518S	ENST00000288135	NM_000222.2	518	Ccc/Tcc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955605	55955605	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	78	477	0	ENST00000263923.4:c.3340G>T	p.Glu1114Ter	p.E1114*	ENST00000263923	NM_002253.2	1114	Gaa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55961092	55961092	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	180	739	0	ENST00000263923.4:c.2848G>T	p.Asp950Tyr	p.D950Y	ENST00000263923	NM_002253.2	950	Gac/Tac																																																																														
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374980446		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	268	622	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55970985	55970985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	59	662	0	ENST00000263923.4:c.1812G>T	p.Lys604Asn	p.K604N	ENST00000263923	NM_002253.2	604	aaG/aaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55972005	55972005	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761405036		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	155	471	0	ENST00000263923.4:c.1639G>A	p.Val547Met	p.V547M	ENST00000263923	NM_002253.2	547	Gtg/Atg																																																																														
TET2	54790	MSKCC	GRCh37	4	106193974	106193974	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	55	306	0	ENST00000380013.4:c.4436T>G	p.Leu1479Arg	p.L1479R	ENST00000380013	NM_001127208.2	1479	cTt/cGt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143114277	143114277	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76891221		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	118	397	0	ENST00000262992.4:c.1144C>T	p.Arg382Trp	p.R382W	ENST00000262992	NM_001101669.1	382	Cgg/Tgg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159104	143159104	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1405228238		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	95	469	0	ENST00000262992.4:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000262992	NM_001101669.1	250	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630299	187630299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	205	630	1	ENST00000441802.2:c.683G>A	p.Gly228Asp	p.G228D	ENST00000441802	NM_005245.3	228	gGc/gAc																																																																														
SDHA	6389	MSKCC	GRCh37	5	228414	228414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	172	543	0	ENST00000264932.6:c.736C>T	p.Arg246Cys	p.R246C	ENST00000264932	NM_004168.2	246	Cgc/Tgc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526411	31526411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	389	1200	0	ENST00000344624.3:c.629A>G	p.Tyr210Cys	p.Y210C	ENST00000344624		210	tAc/tGc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38967461	38967461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	141	377	0	ENST00000357387.3:c.1129C>A	p.Leu377Ile	p.L377I	ENST00000357387	NM_152756.3	377	Ctt/Att																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168741	56168741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	134	511	1	ENST00000399503.3:c.1595G>T	p.Arg532Leu	p.R532L	ENST00000399503	NM_005921.1	532	cGa/cTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588949	67588949	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	127	284	0	ENST00000274335.5:c.1040T>G	p.Leu347Arg	p.L347R	ENST00000274335		347	cTt/cGt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86633825	86633825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	120	294	0	ENST00000274376.6:c.934G>T	p.Glu312Ter	p.E312*	ENST00000274376	NM_002890.2	312	Gaa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86681186	86681186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	84	323	0	ENST00000274376.6:c.2827C>T	p.Leu943Phe	p.L943F	ENST00000274376	NM_002890.2	943	Ctt/Ttt																																																																														
APC	324	MSKCC	GRCh37	5	112174502	112174502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876659539		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	118	351	0	ENST00000257430.4:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000257430	NM_000038.5	1071	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	109	235	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112176581	112176581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	139	338	0	ENST00000257430.4:c.5290C>A	p.Gln1764Lys	p.Q1764K	ENST00000257430	NM_000038.5	1764	Cag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112177377	112177377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	106	323	0	ENST00000257430.4:c.6086C>A	p.Ser2029Tyr	p.S2029Y	ENST00000257430	NM_000038.5	2029	tCt/tAt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562399	176562399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	38	740	0	ENST00000439151.2:c.295G>T	p.Asp99Tyr	p.D99Y	ENST00000439151	NM_022455.4	99	Gac/Tac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631272	176631272	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	123	347	0	ENST00000439151.2:c.1215A>T	p.Lys405Asn	p.K405N	ENST00000439151	NM_022455.4	405	aaA/aaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665317	176665317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	167	424	1	ENST00000439151.2:c.4001C>A	p.Ser1334Tyr	p.S1334Y	ENST00000439151	NM_022455.4	1334	tCt/tAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046683	180046683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	274	993	1	ENST00000261937.6:c.2629G>A	p.Ala877Thr	p.A877T	ENST00000261937	NM_182925.4	877	Gcc/Acc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048561	180048561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	214	892	0	ENST00000261937.6:c.2001G>T	p.Lys667Asn	p.K667N	ENST00000261937	NM_182925.4	667	aaG/aaT																																																																														
IRF4	3662	MSKCC	GRCh37	6	398884	398884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375133421		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	179	588	0	ENST00000380956.4:c.694G>A	p.Gly232Arg	p.G232R	ENST00000380956	NM_001195286.1	232	Gga/Aga																																																																														
E2F3	1871	MSKCC	GRCh37	6	20488359	20488359	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	202	493	0	ENST00000346618.3:c.1015T>G	p.Leu339Val	p.L339V	ENST00000346618	NM_001949.4	339	Ttg/Gtg																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250666	26250666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	201	746	0	ENST00000446824.2:c.168G>T	p.Gln56His	p.Q56H	ENST00000446824	NM_021018.2	56	caG/caT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681100	30681100	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765107298		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	169	422	1	ENST00000376406.3:c.619G>A	p.Gly207Ser	p.G207S	ENST00000376406	NM_014641.2	207	Ggc/Agc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681661	30681661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	196	633	0	ENST00000376406.3:c.436A>G	p.Thr146Ala	p.T146A	ENST00000376406	NM_014641.2	146	Aca/Gca																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815404	32815404	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	75	786	0	ENST00000354258.4:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000354258	NM_000593.5	657	Gaa/Taa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552763	106552763	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	209	627	0	ENST00000369096.4:c.728T>A	p.Val243Asp	p.V243D	ENST00000369096	NM_001198.3	243	gTc/gAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638398	117638398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	132	483	0	ENST00000368508.3:c.6043G>A	p.Val2015Ile	p.V2015I	ENST00000368508	NM_002944.2	2015	Gtt/Att																																																																														
ROS1	6098	MSKCC	GRCh37	6	117645576	117645576	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	199	546	1	ENST00000368508.3:c.5560G>T	p.Asp1854Tyr	p.D1854Y	ENST00000368508	NM_002944.2	1854	Gat/Tat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647547	117647547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	173	583	0	ENST00000368508.3:c.5397G>T	p.Gln1799His	p.Q1799H	ENST00000368508	NM_002944.2	1799	caG/caT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662631	117662631	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	83	535	0	ENST00000368508.3:c.4834G>T	p.Glu1612Ter	p.E1612*	ENST00000368508	NM_002944.2	1612	Gaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117665230	117665230	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1258207555		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	98	238	0	ENST00000368508.3:c.4517G>T	p.Arg1506Ile	p.R1506I	ENST00000368508	NM_002944.2	1506	aGa/aTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674327	117674327	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	157	422	0	ENST00000368508.3:c.4147A>C	p.Lys1383Gln	p.K1383Q	ENST00000368508	NM_002944.2	1383	Aaa/Caa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704605	117704605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	118	449	1	ENST00000368508.3:c.2371G>T	p.Asp791Tyr	p.D791Y	ENST00000368508	NM_002944.2	791	Gac/Tac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715410	117715410	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs769599473		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	136	457	0	ENST00000368508.3:c.1079G>T	p.Arg360Ile	p.R360I	ENST00000368508	NM_002944.2	360	aGa/aTa																																																																														
PARK2	0	MSKCC	GRCh37	6	162864478	162864478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	158	546	0	ENST00000366898.1:c.35G>A	p.Gly12Asp	p.G12D	ENST00000366898	NM_004562.2	12	gGt/gAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259533	55259533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	192	656	0	ENST00000275493.2:c.2591C>T	p.Ala864Val	p.A864V	ENST00000275493	NM_005228.3	864	gCg/gTg																																																																														
MET	4233	MSKCC	GRCh37	7	116413948	116413948	+	intron_variant	Intron	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	72	1114	0	ENST00000397752.3:c.3029-987G>T		p.*1010*	ENST00000397752	NM_000245.2																																																																																
MET	4233	MSKCC	GRCh37	7	116414246	116414246	+	intron_variant	Intron	SNP	T	T	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	250	926	0	ENST00000397752.3:c.3029-689T>C		p.*1010*	ENST00000397752	NM_000245.2																																																																																
MET	4233	MSKCC	GRCh37	7	116414566	116414566	+	intron_variant	Intron	SNP	A	A	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	189	805	0	ENST00000397752.3:c.3029-369A>C		p.*1010*	ENST00000397752	NM_000245.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151836803	151836803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	51	616	0	ENST00000262189.6:c.14417G>T	p.Arg4806Leu	p.R4806L	ENST00000262189	NM_170606.2	4806	cGa/cTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859299	151859299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	34	341	0	ENST00000262189.6:c.11363C>A	p.Ser3788Tyr	p.S3788Y	ENST00000262189	NM_170606.2	3788	tCt/tAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880069	151880069	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	148	426	0	ENST00000262189.6:c.5255A>C	p.Lys1752Thr	p.K1752T	ENST00000262189	NM_170606.2	1752	aAa/aCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945021	151945021	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs756918375		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	12	79	0	ENST00000262189.6:c.2498G>T	p.Arg833Ile	p.R833I	ENST00000262189	NM_170606.2	833	aGa/aTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012244	152012244	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748254163		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	146	417	0	ENST00000262189.6:c.569G>A	p.Arg190Gln	p.R190Q	ENST00000262189	NM_170606.2	190	cGa/cAa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38273576	38273576	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	112	529	0	ENST00000425967.3:c.1759C>T	p.Pro587Ser	p.P587S	ENST00000425967	NM_001174067.1	587	Ccc/Tcc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275837	38275837	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	256	783	0	ENST00000425967.3:c.1432T>G	p.Ser478Ala	p.S478A	ENST00000425967	NM_001174067.1	478	Tca/Gca																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38277205	38277205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	272	824	0	ENST00000425967.3:c.1223T>C	p.Ile408Thr	p.I408T	ENST00000425967	NM_001174067.1	408	aTc/aCc																																																																														
LYN	4067	MSKCC	GRCh37	8	56854504	56854504	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1285322860		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	173	550	0	ENST00000519728.1:c.86G>T	p.Arg29Ile	p.R29I	ENST00000519728	NM_002350.3	29	aGa/aTa																																																																														
LYN	4067	MSKCC	GRCh37	8	56910929	56910929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1218543185		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	187	534	1	ENST00000519728.1:c.1075G>A	p.Glu359Lys	p.E359K	ENST00000519728	NM_002350.3	359	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995547	68995547	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	175	703	2	ENST00000288368.4:c.1951G>T	p.Glu651Ter	p.E651*	ENST00000288368	NM_024870.2	651	Gaa/Taa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078415	5078415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	161	436	0	ENST00000381652.3:c.2102G>A	p.Gly701Asp	p.G701D	ENST00000381652	NM_004972.3	701	gGc/gAc																																																																														
TEK	7010	MSKCC	GRCh37	9	27168520	27168520	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	132	583	0	ENST00000380036.4:c.392T>C	p.Met131Thr	p.M131T	ENST00000380036	NM_000459.3	131	aTg/aCg																																																																														
TEK	7010	MSKCC	GRCh37	9	27209165	27209165	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	190	573	0	ENST00000380036.4:c.2622A>C	p.Glu874Asp	p.E874D	ENST00000380036	NM_000459.3	874	gaA/gaC																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268780	98268780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	178	609	0	ENST00000331920.6:c.303C>A	p.Phe101Leu	p.F101L	ENST00000331920	NM_000264.3	101	ttC/ttA																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128305385	128305385	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs913099145		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	256	645	0	ENST00000265960.3:c.911T>C	p.Ile304Thr	p.I304T	ENST00000265960	NM_001006617.1	304	aTc/aCc																																																																														
ABL1	25	MSKCC	GRCh37	9	133753909	133753909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746156716		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	175	626	0	ENST00000318560.5:c.1378C>T	p.Arg460Cys	p.R460C	ENST00000318560	NM_005157.4	460	Cgc/Tgc																																																																														
ABL1	25	MSKCC	GRCh37	9	133755478	133755478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1355584861		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	219	746	1	ENST00000318560.5:c.1447C>T	p.Arg483Trp	p.R483W	ENST00000318560	NM_005157.4	483	Cgg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918695	44918695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746746824		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	166	519	0	ENST00000377967.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000377967	NM_021140.2	393	cGa/cAa																																																																														
ARAF	369	MSKCC	GRCh37	X	47426524	47426524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	191	748	0	ENST00000377045.4:c.867G>T	p.Lys289Asn	p.K289N	ENST00000377045	NM_001654.4	289	aaG/aaT																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228207	53228207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	265	785	1	ENST00000375401.3:c.2195C>T	p.Ser732Phe	p.S732F	ENST00000375401	NM_004187.3	732	tCc/tTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411963	63411963	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	222	864	0	ENST00000330258.3:c.1204G>T	p.Glu402Ter	p.E402*	ENST00000330258	NM_152424.3	402	Gaa/Taa																																																																														
MED12	9968	MSKCC	GRCh37	X	70357172	70357172	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1367861836		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	253	821	1	ENST00000374080.3:c.5687C>T	p.Ser1896Phe	p.S1896F	ENST00000374080		1896	tCt/tTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76776380	76776380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	42	526	0	ENST00000373344.5:c.7086G>T	p.Met2362Ile	p.M2362I	ENST00000373344	NM_000489.3	2362	atG/atT																																																																														
ATRX	546	MSKCC	GRCh37	X	76814252	76814252	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs122445101		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	101	384	0	ENST00000373344.5:c.6392G>A	p.Arg2131Gln	p.R2131Q	ENST00000373344	NM_000489.3	2131	cGa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76909659	76909659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	152	436	1	ENST00000373344.5:c.4246C>A	p.Gln1416Lys	p.Q1416K	ENST00000373344	NM_000489.3	1416	Cag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76937850	76937850	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs138256318		P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	33	619	0	ENST00000373344.5:c.2898G>T	p.Glu966Asp	p.E966D	ENST00000373344	NM_000489.3	966	gaG/gaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76938094	76938094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	197	681	1	ENST00000373344.5:c.2654G>T	p.Arg885Ile	p.R885I	ENST00000373344	NM_000489.3	885	aGa/aTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939072	76939072	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	186	559	0	ENST00000373344.5:c.1676C>A	p.Ser559Ter	p.S559*	ENST00000373344	NM_000489.3	559	tCa/tAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939806	76939806	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	232	588	0	ENST00000373344.5:c.942A>C	p.Arg314Ser	p.R314S	ENST00000373344	NM_000489.3	314	agA/agC																																																																														
XIAP	331	MSKCC	GRCh37	X	123020384	123020384	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	101	331	0	ENST00000355640.3:c.872C>G	p.Ala291Gly	p.A291G	ENST00000355640		291	gCt/gGt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123202443	123202443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	98	461	0	ENST00000218089.9:c.2295G>T	p.Met765Ile	p.M765I	ENST00000218089	NM_001042749.1	765	atG/atT																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123499661	123499661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	32	612	0	ENST00000371139.4:c.188C>A	p.Ser63Tyr	p.S63Y	ENST00000371139	NM_001114937.2	63	tCt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0041164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	49	763	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468463	89468463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	10	357	0	ENST00000336596.2:c.1997A>G	p.Asp666Gly	p.D666G	ENST00000336596	NM_005233.5	666	gAc/gGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921555	178921555	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	27	298	0	ENST00000263967.3:c.1037T>G	p.Val346Gly	p.V346G	ENST00000263967	NM_006218.2	346	gTa/gGa																																																																														
APC	324	MSKCC	GRCh37	5	112173340	112173340	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	18	301	0	ENST00000257430.4:c.2051del	p.Leu684CysfsTer34	p.L684Cfs*34	ENST00000257430	NM_000038.5	683	acT/ac																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413033	63413033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1190709308		P-0041164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	24	930	0	ENST00000330258.3:c.134C>T	p.Ser45Phe	p.S45F	ENST00000330258	NM_152424.3	45	tCc/tTc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519874		P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	40	387	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920381	134920381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	45	561	0	ENST00000398015.3:c.2196G>A	p.Met732Ile	p.M732I	ENST00000398015	NM_004441.4	732	atG/atA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453987	140453987	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	25	240	0	ENST00000288602.6:c.1741A>T	p.Asn581Tyr	p.N581Y	ENST00000288602	NM_004333.4	581	Aat/Tat																																																																														
HGF	3082	MSKCC	GRCh37	7	81381516	81381516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	40	302	0	ENST00000222390.5:c.545G>A	p.Gly182Glu	p.G182E	ENST00000222390	NM_000601.4	182	gGg/gAg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350514	15350514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	60	721	1	ENST00000263377.2:c.3401C>T	p.Pro1134Leu	p.P1134L	ENST00000263377	NM_058243.2	1134	cCc/cTc																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675119	40675119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766760890		P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	58	875	2	ENST00000249776.8:c.83C>T	p.Pro28Leu	p.P28L	ENST00000249776	NM_033286.3	28	cCg/cTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299917	15299917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	68	835	3	ENST00000263388.2:c.1261C>T	p.Arg421Cys	p.R421C	ENST00000263388	NM_000435.2	421	Cgt/Tgt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1625656	1625656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	66	890	1	ENST00000344749.5:c.418C>T	p.Pro140Ser	p.P140S	ENST00000344749	NM_001136139.2	140	Cct/Tct																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120296	70120296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1338	132	744	0	ENST00000245479.2:c.1298C>T	p.Pro433Leu	p.P433L	ENST00000245479	NM_000346.3	433	cCg/cTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351157	89351157	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	48	646	0	ENST00000301030.4:c.1793A>C	p.His598Pro	p.H598P	ENST00000301030	NM_001256183.1	598	cAc/cCc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794096	42794096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	42	494	1	ENST00000575354.2:c.1457G>A	p.Gly486Asp	p.G486D	ENST00000575354	NM_015125.3	486	gGc/gAc																																																																														
PAK7	0	MSKCC	GRCh37	20	9624838	9624838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	40	467	0	ENST00000353224.5:c.139G>A	p.Ala47Thr	p.A47T	ENST00000353224	NM_177990.2	47	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112173828	112173828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	20	357	0	ENST00000257430.4:c.2537C>T	p.Ser846Phe	p.S846F	ENST00000257430	NM_000038.5	846	tCt/tTt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468218	50468218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	88	668	1	ENST00000331340.3:c.1453G>A	p.Gly485Ser	p.G485S	ENST00000331340	NM_006060.4	485	Ggc/Agc																																																																														
BTK	695	MSKCC	GRCh37	X	100614312	100614312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	40	272	0	ENST00000308731.7:c.863G>A	p.Arg288Gln	p.R288Q	ENST00000308731	NM_000061.2	288	cGg/cAg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18961602	18961603	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0041200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	47	606	0	ENST00000262803.5:c.735_736delinsT	p.Ser247ProfsTer74	p.S247Pfs*74	ENST00000262803	NM_002911.3	245	atCCcc/atTcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	27	359	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0041232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	26	471	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931588		P-0041232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	12	350	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0041232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	27	450	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591099	67591099	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs773686816		P-0041232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	24	295	1	ENST00000274335.5:c.1692C>A	p.Asn564Lys	p.N564K	ENST00000274335		564	aaC/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0041276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	1283	819	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913474		P-0041276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	469	755	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29095917	29095917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780192		P-0041276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	346	620	1	ENST00000328354.6:c.917G>A	p.Gly306Glu	p.G306E	ENST00000328354	NM_007194.3	306	gGg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	17	643	0	ENST00000269305.4:c.695T>G	p.Ile232Ser	p.I232S	ENST00000269305	NM_001126112.2	232	aTc/aGc																																																																														
TP63	8626	MSKCC	GRCh37	3	189586470	189586470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147148566		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	123	507	0	ENST00000264731.3:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000264731	NM_003722.4	365	tCg/tTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	163	557	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	219	645	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
PARK2	0	MSKCC	GRCh37	6	161781201	161781201	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55830907		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	158	599	0	ENST00000366898.1:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000366898	NM_004562.2	402	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757922864		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	63	485	0	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40911144	40911144	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776134993		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	82	468	0	ENST00000373198.4:c.2161C>T	p.Arg721Cys	p.R721C	ENST00000373198	NM_133170.3	721	Cgt/Tgt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041739	29041739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	67	413	0	ENST00000282397.4:c.80C>T	p.Ser27Leu	p.S27L	ENST00000282397	NM_002019.4	27	tCa/tTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245843	46245843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	110	407	0	ENST00000334344.6:c.3937C>T	p.Gln1313Ter	p.Q1313*	ENST00000334344	NM_152641.2	1313	Caa/Taa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250922	99250922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	179	694	0	ENST00000268035.6:c.226C>T	p.Pro76Ser	p.P76S	ENST00000268035	NM_000875.3	76	Ccc/Tcc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888286	112888286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	102	440	0	ENST00000351677.2:c.302C>T	p.Pro101Leu	p.P101L	ENST00000351677	NM_002834.3	101	cCt/cTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	120	529	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
ALK	238	MSKCC	GRCh37	2	29498004	29498004	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1208550472		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	180	696	0	ENST00000389048.3:c.2002G>A	p.Glu668Lys	p.E668K	ENST00000389048	NM_004304.4	668	Gaa/Aaa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	117	365	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857784	9857784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145861983		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	157	542	0	ENST00000330684.3:c.3617G>A	p.Arg1206Gln	p.R1206Q	ENST00000330684	NM_001134407.1	1206	cGa/cAa																																																																														
RB1	5925	MSKCC	GRCh37	13	49030485	49030485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs483352690		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	54	296	0	ENST00000267163.4:c.1960G>A	p.Val654Met	p.V654M	ENST00000267163	NM_000321.2	654	Gtg/Atg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087961	27087961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	173	558	1	ENST00000324856.7:c.2248C>T	p.Arg750Ter	p.R750*	ENST00000324856	NM_006015.4	750	Cga/Tga																																																																														
PARK2	0	MSKCC	GRCh37	6	161781225	161781225	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1801334		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	111	569	1	ENST00000366898.1:c.1180G>A	p.Asp394Asn	p.D394N	ENST00000366898	NM_004562.2	394	Gat/Aat																																																																														
AXL	558	MSKCC	GRCh37	19	41736901	41736901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201799923		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	199	900	1	ENST00000301178.4:c.616G>A	p.Glu206Lys	p.E206K	ENST00000301178	NM_021913.4	206	Gaa/Aaa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156738	2156738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	198	758	0	ENST00000434045.2:c.184G>A	p.Gly62Arg	p.G62R	ENST00000434045	NM_001127598.1	62	Ggg/Agg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286913	33286913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	224	787	0	ENST00000374542.5:c.2024C>T	p.Ser675Phe	p.S675F	ENST00000374542	NM_001141970.1	675	tCc/tTc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321372	1321372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1319865856		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	168	634	2	ENST00000381566.1:c.383C>T	p.Ser128Leu	p.S128L	ENST00000381566		128	tCg/tTg																																																																														
REL	5966	MSKCC	GRCh37	2	61128146	61128146	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	57	288	0	ENST00000295025.8:c.322C>T	p.Arg108Ter	p.R108*	ENST00000295025	NM_002908.2	108	Cga/Tga																																																																														
SDHA	6389	MSKCC	GRCh37	5	256524	256524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	93	476	0	ENST00000264932.6:c.1984C>T	p.Arg662Cys	p.R662C	ENST00000264932	NM_004168.2	662	Cgc/Tgc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68301905	68301905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	174	578	2	ENST00000487270.1:c.307C>T	p.Leu103Phe	p.L103F	ENST00000487270	NM_133509.3	103	Ctc/Ttc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965706	93965706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	71	361	0	ENST00000369303.4:c.2222G>A	p.Gly741Glu	p.G741E	ENST00000369303	NM_004440.3	741	gGa/gAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509768	187509768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766893768		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	29	323	0	ENST00000441802.2:c.13745C>T	p.Ser4582Phe	p.S4582F	ENST00000441802	NM_005245.3	4582	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244706	46244706	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	152	607	1	ENST00000334344.6:c.2800C>T	p.Gln934Ter	p.Q934*	ENST00000334344	NM_152641.2	934	Caa/Taa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713536	30713536	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	143	589	0	ENST00000359013.4:c.936G>A	p.Trp312Ter	p.W312*	ENST00000359013	NM_001024847.2	312	tgG/tgA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435061	18435061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267603400		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	83	371	0	ENST00000266497.5:c.46G>A	p.Glu16Lys	p.E16K	ENST00000266497		16	Gaa/Aaa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460515	149460515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777239066		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	151	853	0	ENST00000286301.3:c.122G>A	p.Arg41Gln	p.R41Q	ENST00000286301	NM_005211.3	41	cGa/cAa																																																																														
PARK2	0	MSKCC	GRCh37	6	161969912	161969912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1460011098		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	154	617	1	ENST00000366898.1:c.1057G>A	p.Glu353Lys	p.E353K	ENST00000366898	NM_004562.2	353	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518111	8518111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	130	485	0	ENST00000356435.5:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000356435		427	cGa/cAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374980446		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	150	756	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499354	89499354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	101	415	0	ENST00000336596.2:c.2524C>T	p.Arg842Ter	p.R842*	ENST00000336596	NM_005233.5	842	Cga/Tga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288600	33288600	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs779014832		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	288	496	0	ENST00000374542.5:c.952C>T	p.Arg318Ter	p.R318*	ENST00000374542	NM_001141970.1	318	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570054	212570054	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368876919		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	83	444	0	ENST00000342788.4:c.1187G>A	p.Arg396Lys	p.R396K	ENST00000342788	NM_005235.2	396	aGa/aAa																																																																														
SMO	6608	MSKCC	GRCh37	7	128829272	128829272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs924171569		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	212	764	0	ENST00000249373.3:c.280G>A	p.Gly94Arg	p.G94R	ENST00000249373	NM_005631.4	94	Gga/Aga																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459737	149459737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148673905		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	219	807	1	ENST00000286301.3:c.470C>T	p.Ser157Leu	p.S157L	ENST00000286301	NM_005211.3	157	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106364	27106364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	218	671	0	ENST00000324856.7:c.5975C>T	p.Ser1992Leu	p.S1992L	ENST00000324856	NM_006015.4	1992	tCa/tTa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256144	16256144	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138355680		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	159	612	0	ENST00000375759.3:c.3409C>T	p.Arg1137Cys	p.R1137C	ENST00000375759	NM_015001.2	1137	Cgt/Tgt																																																																														
ALK	238	MSKCC	GRCh37	2	29455312	29455312	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	101	516	0	ENST00000389048.3:c.2490G>A	p.Met830Ile	p.M830I	ENST00000389048	NM_004304.4	830	atG/atA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317921	8317921	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150063446		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	50	453	0	ENST00000356435.5:c.5692C>T	p.Arg1898Cys	p.R1898C	ENST00000356435		1898	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341941	8341941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	46	367	0	ENST00000356435.5:c.4699G>A	p.Asp1567Asn	p.D1567N	ENST00000356435		1567	Gat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499483	89499483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1426641543		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	115	513	0	ENST00000336596.2:c.2653C>T	p.Pro885Ser	p.P885S	ENST00000336596	NM_005233.5	885	Ccc/Tcc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2114301	2114301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45517176		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	201	804	1	ENST00000219476.3:c.1472C>T	p.Ser491Leu	p.S491L	ENST00000219476	NM_000548.3	491	tCg/tTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9560883	9560883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	114	537	0	ENST00000353224.5:c.899G>A	p.Gly300Glu	p.G300E	ENST00000353224	NM_177990.2	300	gGa/gAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893668	28893668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs374452662		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	107	461	0	ENST00000282397.4:c.3178C>T	p.Arg1060Ter	p.R1060*	ENST00000282397	NM_002019.4	1060	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230405	46230405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1391481708		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	106	414	0	ENST00000334344.6:c.739C>T	p.Arg247Cys	p.R247C	ENST00000334344	NM_152641.2	247	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629367	187629367	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754114613		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	59	842	0	ENST00000441802.2:c.1615C>T	p.Arg539Cys	p.R539C	ENST00000441802	NM_005245.3	539	Cgt/Tgt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244913	123244913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1224606327		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	154	909	2	ENST00000358487.5:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000358487	NM_000141.4	731	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81381466	81381466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	84	346	0	ENST00000222390.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000222390	NM_000601.4	199	Gaa/Aaa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972424	81972424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	131	535	0	ENST00000359376.3:c.3217C>T	p.Leu1073Phe	p.L1073F	ENST00000359376	NM_002661.3	1073	Ctc/Ttc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130427	29130427	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs587781269		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	173	722	0	ENST00000328354.6:c.283C>T	p.Arg95Ter	p.R95*	ENST00000328354	NM_007194.3	95	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400190	41400190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	101	557	0	ENST00000373198.4:c.569G>A	p.Arg190Lys	p.R190K	ENST00000373198	NM_133170.3	190	aGa/aAa																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961460	54961460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	156	634	0	ENST00000312783.6:c.172C>T	p.Pro58Ser	p.P58S	ENST00000312783	NM_198436.1	58	Cct/Tct																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202299	138202299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	172	625	0	ENST00000237289.4:c.2216C>T	p.Pro739Leu	p.P739L	ENST00000237289	NM_001270507.1	739	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858642	9858642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	128	556	0	ENST00000330684.3:c.2759G>A	p.Arg920Lys	p.R920K	ENST00000330684	NM_001134407.1	920	aGa/aAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989551	212989551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	98	410	0	ENST00000342788.4:c.160G>A	p.Glu54Lys	p.E54K	ENST00000342788	NM_005235.2	54	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743942	40743942	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868489194		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	113	550	1	ENST00000373198.4:c.3053G>A	p.Arg1018Gln	p.R1018Q	ENST00000373198	NM_133170.3	1018	cGa/cAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719980	18719980	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs889775181		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	67	330	0	ENST00000266497.5:c.3877G>A	p.Glu1293Lys	p.E1293K	ENST00000266497		1293	Gaa/Aaa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391527	139391527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	195	1098	3	ENST00000277541.6:c.6664C>T	p.Pro2222Ser	p.P2222S	ENST00000277541	NM_017617.3	2222	Ccg/Tcg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432102	121432102	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1215273865		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	210	883	1	ENST00000257555.6:c.849G>A	p.Met283Ile	p.M283I	ENST00000257555		283	atG/atA																																																																														
TP63	8626	MSKCC	GRCh37	3	189349321	189349321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	46	343	0	ENST00000264731.3:c.17C>T	p.Ser6Leu	p.S6L	ENST00000264731	NM_003722.4	6	tCa/tTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55970884	55970884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	36	562	0	ENST00000263923.4:c.1913G>A	p.Gly638Glu	p.G638E	ENST00000263923	NM_002253.2	638	gGa/gAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157539	106157539	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192553789		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	60	342	0	ENST00000380013.4:c.2440C>T	p.Arg814Cys	p.R814C	ENST00000380013	NM_001127208.2	814	Cgt/Tgt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670597	134670597	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1330628001		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	217	913	1	ENST00000398015.3:c.508C>T	p.Arg170Trp	p.R170W	ENST00000398015	NM_004441.4	170	Cgg/Tgg																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683508	182683508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	56	470	1	ENST00000292782.4:c.37C>T	p.Arg13Cys	p.R13C	ENST00000292782	NM_020640.2	13	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1294403	1294403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	152	842	1	ENST00000310581.5:c.598G>A	p.Glu200Lys	p.E200K	ENST00000310581	NM_198253.2	200	Gaa/Aaa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249824	110249824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	238	936	1	ENST00000374672.4:c.851C>T	p.Ser284Leu	p.S284L	ENST00000374672	NM_004235.4	284	tCg/tTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133225525	133225525	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762090058		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	178	660	0	ENST00000320574.5:c.4139C>T	p.Ser1380Leu	p.S1380L	ENST00000320574	NM_006231.2	1380	tCg/tTg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650845	37650845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	149	753	0	ENST00000447079.4:c.2317C>T	p.Arg773Cys	p.R773C	ENST00000447079	NM_015083.1	773	Cgt/Tgt																																																																														
BTK	695	MSKCC	GRCh37	X	100609658	100609658	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782740486		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	137	253	1	ENST00000308731.7:c.1591G>A	p.Asp531Asn	p.D531N	ENST00000308731	NM_000061.2	531	Gat/Aat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508337	106508337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760070255		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	128	409	0	ENST00000359195.3:c.331G>A	p.Asp111Asn	p.D111N	ENST00000359195	NM_002649.2	111	Gac/Aac																																																																														
BLM	641	MSKCC	GRCh37	15	91358478	91358478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1022266595		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	139	607	0	ENST00000355112.3:c.4223C>T	p.Pro1408Leu	p.P1408L	ENST00000355112	NM_000057.2	1408	cCg/cTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862887	9862887	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868222927		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	319	718	1	ENST00000330684.3:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000330684	NM_001134407.1	806	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257107	16257107	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1476670608		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	147	666	2	ENST00000375759.3:c.4372C>T	p.Arg1458Cys	p.R1458C	ENST00000375759	NM_015001.2	1458	Cgt/Tgt																																																																														
CCND1	595	MSKCC	GRCh37	11	69466031	69466031	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	593	911	0	ENST00000227507.2:c.869T>G	p.Val290Gly	p.V290G	ENST00000227507	NM_053056.2	290	gTg/gGg																																																																														
TET1	80312	MSKCC	GRCh37	10	70411686	70411686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	95	448	0	ENST00000373644.4:c.4360G>A	p.Glu1454Lys	p.E1454K	ENST00000373644	NM_030625.2	1454	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097228	11097228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201600949		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	347	878	0	ENST00000344626.4:c.719C>T	p.Pro240Leu	p.P240L	ENST00000344626	NM_003072.3	240	cCg/cTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416895	416895	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	150	472	0	ENST00000399788.2:c.3655C>T	p.Arg1219Ter	p.R1219*	ENST00000399788	NM_001042603.1	1219	Cga/Tga																																																																														
PAK7	0	MSKCC	GRCh37	20	9561325	9561325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	113	458	0	ENST00000353224.5:c.457G>A	p.Gly153Arg	p.G153R	ENST00000353224	NM_177990.2	153	Gga/Aga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976761	2976761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	200	954	0	ENST00000396946.4:c.1251G>A	p.Met417Ile	p.M417I	ENST00000396946	NM_032415.4	417	atG/atA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40789994	40789994	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs746391800		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	109	583	0	ENST00000373198.4:c.2737G>A	p.Glu913Lys	p.E913K	ENST00000373198	NM_133170.3	913	Gag/Aag																																																																														
YES1	7525	MSKCC	GRCh37	18	756700	756700	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765855267		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	155	625	0	ENST00000314574.4:c.128C>T	p.Pro43Leu	p.P43L	ENST00000314574	NM_005433.3	43	cCg/cTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376991	118376991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	136	425	0	ENST00000534358.1:c.10384C>T	p.Leu3462Phe	p.L3462F	ENST00000534358	NM_005933.3	3462	Ctt/Ttt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470516	25470516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs778270132		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	277	886	0	ENST00000264709.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000264709	NM_175629.2	320	Cga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965644	93965644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	99	452	0	ENST00000369303.4:c.2284C>T	p.Arg762Cys	p.R762C	ENST00000369303	NM_004440.3	762	Cgc/Tgc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156520	106156520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202152392		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	37	413	0	ENST00000380013.4:c.1421C>T	p.Pro474Leu	p.P474L	ENST00000380013	NM_001127208.2	474	cCg/cTg																																																																														
RET	5979	MSKCC	GRCh37	10	43619163	43619163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	161	738	1	ENST00000355710.3:c.2846G>A	p.Gly949Glu	p.G949E	ENST00000355710	NM_020975.4	949	gGa/gAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188525	11188525	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs922525420		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	149	521	0	ENST00000361445.4:c.5896C>T	p.Arg1966Trp	p.R1966W	ENST00000361445	NM_004958.3	1966	Cgg/Tgg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42852443	42852443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139092674		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	157	688	0	ENST00000398585.3:c.643G>A	p.Glu215Lys	p.E215K	ENST00000398585	NM_001135099.1	215	Gag/Aag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162945	38162945	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185811622		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	106	540	3	ENST00000317025.8:c.2261C>T	p.Ser754Leu	p.S754L	ENST00000317025	NM_023034.1	754	tCg/tTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857250	9857250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866228360		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	165	613	0	ENST00000330684.3:c.4151C>T	p.Ser1384Leu	p.S1384L	ENST00000330684	NM_001134407.1	1384	tCg/tTg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876497	35876497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	160	606	0	ENST00000303115.3:c.1289C>T	p.Pro430Leu	p.P430L	ENST00000303115	NM_002185.3	430	cCa/cTa																																																																														
VHL	7428	MSKCC	GRCh37	3	10188273	10188273	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780732		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	201	729	0	ENST00000256474.2:c.416C>T	p.Ser139Phe	p.S139F	ENST00000256474	NM_000551.3	139	tCt/tTt																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166364	118166364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	102	428	0	ENST00000369448.3:c.874C>T	p.Leu292Phe	p.L292F	ENST00000369448	NM_017709.3	292	Ctt/Ttt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992766	72992766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	190	772	0	ENST00000268489.5:c.1279C>T	p.Pro427Ser	p.P427S	ENST00000268489	NM_006885.3	427	Cct/Tct																																																																														
LYN	4067	MSKCC	GRCh37	8	56859043	56859043	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	86	480	0	ENST00000519728.1:c.169C>T	p.Gln57Ter	p.Q57*	ENST00000519728	NM_002350.3	57	Caa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224714	36224714	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768250201		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	277	1104	0	ENST00000222270.7:c.7100C>T	p.Pro2367Leu	p.P2367L	ENST00000222270	NM_014727.1	2367	cCc/cTc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31504673	31504673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	93	583	0	ENST00000344624.3:c.1657C>T	p.Pro553Ser	p.P553S	ENST00000344624		553	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058515	69058515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	127	619	0	ENST00000288368.4:c.4159C>T	p.His1387Tyr	p.H1387Y	ENST00000288368	NM_024870.2	1387	Cat/Tat																																																																														
CDC73	79577	MSKCC	GRCh37	1	193117027	193117027	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	80	391	0	ENST00000367435.3:c.760C>T	p.Gln254Ter	p.Q254*	ENST00000367435	NM_024529.4	254	Caa/Taa																																																																														
AR	367	MSKCC	GRCh37	X	66765304	66765304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	214	439	0	ENST00000374690.3:c.316G>A	p.Gly106Ser	p.G106S	ENST00000374690	NM_000044.3	106	Ggc/Agc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224713	36224713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1280550594		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	277	1084	0	ENST00000222270.7:c.7099C>T	p.Pro2367Ser	p.P2367S	ENST00000222270	NM_014727.1	2367	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528593	8528593	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	90	405	0	ENST00000356435.5:c.539C>T	p.Ser180Leu	p.S180L	ENST00000356435		180	tCa/tTa																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750452	41750452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	148	676	0	ENST00000226382.2:c.176C>T	p.Ser59Phe	p.S59F	ENST00000226382	NM_003924.3	59	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683984	117683984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	72	515	0	ENST00000368508.3:c.3163G>A	p.Gly1055Arg	p.G1055R	ENST00000368508	NM_002944.2	1055	Gga/Aga																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39570468	39570468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs267605182		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	40	230	1	ENST00000262039.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000262039	NM_002647.2	222	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37863284	37863284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	191	823	0	ENST00000269571.5:c.115C>T	p.Pro39Ser	p.P39S	ENST00000269571		39	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857769	9857769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	144	541	0	ENST00000330684.3:c.3632C>T	p.Ser1211Phe	p.S1211F	ENST00000330684	NM_001134407.1	1211	tCc/tTc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39542579	39542579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200002230		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	130	507	1	ENST00000262039.4:c.383C>T	p.Ser128Leu	p.S128L	ENST00000262039	NM_002647.2	128	tCg/tTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959181	2959181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	205	889	2	ENST00000396946.4:c.2335C>T	p.Arg779Trp	p.R779W	ENST00000396946	NM_032415.4	779	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939072	76939072	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060499760		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	140	268	0	ENST00000373344.5:c.1676C>T	p.Ser559Leu	p.S559L	ENST00000373344	NM_000489.3	559	tCa/tTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032099	10032099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	188	730	0	ENST00000330684.3:c.724G>A	p.Glu242Lys	p.E242K	ENST00000330684	NM_001134407.1	242	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094880	11094880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060502087		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	415	1008	1	ENST00000344626.4:c.53C>T	p.Pro18Leu	p.P18L	ENST00000344626	NM_003072.3	18	cCg/cTg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614583	38614583	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121434312		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	110	556	0	ENST00000299084.4:c.349C>T	p.Arg117Ter	p.R117*	ENST00000299084	NM_152594.2	117	Cga/Tga																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893590	28893590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752645756		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	66	512	0	ENST00000282397.4:c.3256G>A	p.Gly1086Arg	p.G1086R	ENST00000282397	NM_002019.4	1086	Gga/Aga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18466982	18466982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	63	396	0	ENST00000266497.5:c.1121G>A	p.Gly374Glu	p.G374E	ENST00000266497		374	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956528	93956528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	48	362	0	ENST00000369303.4:c.2708C>T	p.Pro903Leu	p.P903L	ENST00000369303	NM_004440.3	903	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433072	49433072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	244	1032	1	ENST00000301067.7:c.8299C>T	p.Pro2767Ser	p.P2767S	ENST00000301067	NM_003482.3	2767	Cct/Tct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55233129	55233129	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	135	588	0	ENST00000275493.2:c.1879G>T	p.Gly627Ter	p.G627*	ENST00000275493	NM_005228.3	627	Gga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747109	40747109	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	161	664	1	ENST00000373198.4:c.2973G>A	p.Trp991Ter	p.W991*	ENST00000373198	NM_133170.3	991	tgG/tgA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980744	40980744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199751250		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	126	545	0	ENST00000373198.4:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000373198	NM_133170.3	581	cGg/cAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979375	93979375	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	49	311	1	ENST00000369303.4:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000369303	NM_004440.3	485	Caa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647536	117647536	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	94	570	0	ENST00000368508.3:c.5408G>A	p.Trp1803Ter	p.W1803*	ENST00000368508	NM_002944.2	1803	tGg/tAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11168269	11168269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	190	583	0	ENST00000361445.4:c.7603C>T	p.His2535Tyr	p.H2535Y	ENST00000361445	NM_004958.3	2535	Cat/Tat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11270948	11270948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	82	404	0	ENST00000361445.4:c.3577C>T	p.Pro1193Ser	p.P1193S	ENST00000361445	NM_004958.3	1193	Cca/Tca																																																																														
MTOR	2475	MSKCC	GRCh37	1	11293483	11293483	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	125	675	0	ENST00000361445.4:c.2393T>G	p.Val798Gly	p.V798G	ENST00000361445	NM_004958.3	798	gTc/gGc																																																																														
SDHB	6390	MSKCC	GRCh37	1	17380498	17380498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	266	888	0	ENST00000375499.3:c.17C>A	p.Ala6Asp	p.A6D	ENST00000375499	NM_003000.2	6	gCc/gAc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935442	36935442	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	226	804	0	ENST00000361632.4:c.1286-1G>A		p.X429_splice	ENST00000361632		429																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46511684	46511684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs762065227		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	129	615	0	ENST00000262741.5:c.1093C>T	p.Arg365Ter	p.R365*	ENST00000262741	NM_003629.3	365	Cga/Tga																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739033	46739033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	132	500	1	ENST00000371975.4:c.1382C>T	p.Ala461Val	p.A461V	ENST00000371975	NM_003579.3	461	gCt/gTt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834198	156834198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2274496		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	279	1055	1	ENST00000524377.1:c.265G>A	p.Gly89Ser	p.G89S	ENST00000524377	NM_002529.3	89	Ggc/Agc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843751	156843751	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	289	1011	1	ENST00000524377.1:c.1177G>A	p.Val393Ile	p.V393I	ENST00000524377	NM_002529.3	393	Gtc/Atc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651600	206651600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	291	1054	1	ENST00000367120.3:c.910G>A	p.Asp304Asn	p.D304N	ENST00000367120	NM_014002.3	304	Gac/Aac																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651669	206651669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868950433		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	239	983	0	ENST00000367120.3:c.979C>T	p.His327Tyr	p.H327Y	ENST00000367120	NM_014002.3	327	Cat/Tat																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206653791	206653791	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	158	723	0	ENST00000367120.3:c.1342G>A	p.Glu448Lys	p.E448K	ENST00000367120	NM_014002.3	448	Gag/Aag																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666435	206666435	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	165	678	1	ENST00000367120.3:c.1915C>T	p.Gln639Ter	p.Q639*	ENST00000367120	NM_014002.3	639	Cag/Tag																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612876	228612876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	200	785	0	ENST00000366696.1:c.151G>A	p.Glu51Lys	p.E51K	ENST00000366696	NM_003493.2	51	Gag/Aag																																																																														
FH	2271	MSKCC	GRCh37	1	241675323	241675323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	102	504	0	ENST00000366560.3:c.499G>A	p.Gly167Ser	p.G167S	ENST00000366560	NM_000143.3	167	Ggt/Agt																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246027149	246027149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	167	671	1	ENST00000388985.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000388985		285	Gaa/Aaa																																																																														
RET	5979	MSKCC	GRCh37	10	43612093	43612093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	169	726	3	ENST00000355710.3:c.2198G>A	p.Gly733Asp	p.G733D	ENST00000355710	NM_020975.4	733	gGc/gAc																																																																														
RET	5979	MSKCC	GRCh37	10	43615010	43615010	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	244	742	0	ENST00000355710.3:c.2424A>T	p.Lys808Asn	p.K808N	ENST00000355710	NM_020975.4	808	aaA/aaT																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63661945	63661945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	118	458	0	ENST00000279873.7:c.49G>A	p.Gly17Arg	p.G17R	ENST00000279873	NM_032199.2	17	Gga/Aga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925616	114925616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776874056		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	165	815	0	ENST00000543371.1:c.1694C>T	p.Pro565Leu	p.P565L	ENST00000543371	NM_001198531.1	565	cCt/cTt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123276872	123276872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	83	451	0	ENST00000358487.5:c.1045G>A	p.Gly349Arg	p.G349R	ENST00000358487	NM_000141.4	349	Ggg/Agg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435082	18435082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	89	413	0	ENST00000266497.5:c.67G>A	p.Glu23Lys	p.E23K	ENST00000266497		23	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435184	18435184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1251272146		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	72	375	1	ENST00000266497.5:c.169G>A	p.Glu57Lys	p.E57K	ENST00000266497		57	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435395	18435395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1344663732		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	96	351	1	ENST00000266497.5:c.380G>A	p.Gly127Glu	p.G127E	ENST00000266497		127	gGa/gAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18524140	18524140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	71	436	0	ENST00000266497.5:c.1652C>T	p.Ser551Leu	p.S551L	ENST00000266497		551	tCa/tTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691118	18691118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	68	446	0	ENST00000266497.5:c.3229G>A	p.Glu1077Lys	p.E1077K	ENST00000266497		1077	Gag/Aag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46240677	46240677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	77	398	0	ENST00000334344.6:c.1537C>T	p.Pro513Ser	p.P513S	ENST00000334344	NM_152641.2	513	Cca/Tca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244719	46244719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	183	609	0	ENST00000334344.6:c.2813C>T	p.Thr938Ile	p.T938I	ENST00000334344	NM_152641.2	938	aCt/aTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432618	49432618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	263	1035	1	ENST00000301067.7:c.8521C>T	p.Pro2841Ser	p.P2841S	ENST00000301067	NM_003482.3	2841	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434729	49434729	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761636357		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	239	945	0	ENST00000301067.7:c.6824C>T	p.Pro2275Leu	p.P2275L	ENST00000301067	NM_003482.3	2275	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434906	49434906	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1466593517		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	251	905	0	ENST00000301067.7:c.6647C>T	p.Ser2216Phe	p.S2216F	ENST00000301067	NM_003482.3	2216	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437199	49437199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1483821975		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	191	719	0	ENST00000301067.7:c.5480C>T	p.Pro1827Leu	p.P1827L	ENST00000301067	NM_003482.3	1827	cCa/cTa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486551	56486551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1034050608		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	160	708	0	ENST00000267101.3:c.1130C>T	p.Pro377Leu	p.P377L	ENST00000267101	NM_001982.3	377	cCt/cTt																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233625	69233625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	65	268	0	ENST00000462284.1:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000462284	NM_002392.5	497	cCc/cTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133245274	133245274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	244	890	0	ENST00000320574.5:c.1973A>G	p.Lys658Arg	p.K658R	ENST00000320574	NM_006231.2	658	aAg/aGg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557555	21557555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1331631745		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	169	724	1	ENST00000382592.4:c.2290C>T	p.Pro764Ser	p.P764S	ENST00000382592	NM_014572.2	764	Cct/Tct																																																																														
FLT3	2322	MSKCC	GRCh37	13	28624342	28624342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	65	444	0	ENST00000241453.7:c.632C>T	p.Pro211Leu	p.P211L	ENST00000241453	NM_004119.2	211	cCa/cTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910477	32910477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	62	357	0	ENST00000380152.3:c.1985C>T	p.Ser662Phe	p.S662F	ENST00000380152		662	tCt/tTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913867	32913867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	76	492	0	ENST00000380152.3:c.5375C>T	p.Ser1792Phe	p.S1792F	ENST00000380152		1792	tCc/tTc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134471	41134471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	121	635	0	ENST00000379561.5:c.1157C>T	p.Ser386Leu	p.S386L	ENST00000379561	NM_002015.3	386	tCa/tTa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643795	38643795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	200	728	0	ENST00000299084.4:c.1265C>T	p.Pro422Leu	p.P422L	ENST00000299084	NM_152594.2	422	cCt/cTt																																																																														
BLM	641	MSKCC	GRCh37	15	91354479	91354479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773830810		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	91	522	1	ENST00000355112.3:c.3919C>T	p.Pro1307Ser	p.P1307S	ENST00000355112	NM_000057.2	1307	Ccc/Tcc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343575	343575	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765360584		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	235	932	2	ENST00000262320.3:c.2099C>T	p.Ala700Val	p.A700V	ENST00000262320	NM_003502.3	700	gCt/gTt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129662	2129662	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1163066622		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	194	935	0	ENST00000219476.3:c.3389C>T	p.Ser1130Phe	p.S1130F	ENST00000219476	NM_000548.3	1130	tCc/tTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778060	3778060	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064796531		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	273	1109	1	ENST00000262367.5:c.6988C>T	p.Leu2330Phe	p.L2330F	ENST00000262367	NM_004380.2	2330	Ctc/Ttc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857205	9857205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	137	607	0	ENST00000330684.3:c.4196G>A	p.Ser1399Asn	p.S1399N	ENST00000330684	NM_001134407.1	1399	aGc/aAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916227	9916227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	135	640	0	ENST00000330684.3:c.2062G>A	p.Gly688Arg	p.G688R	ENST00000330684	NM_001134407.1	688	Gga/Aga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9927967	9927967	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867195830		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	98	443	0	ENST00000330684.3:c.1772G>A	p.Gly591Glu	p.G591E	ENST00000330684	NM_001134407.1	591	gGg/gAg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50810116	50810116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	75	613	0	ENST00000398568.2:c.940C>T	p.Pro314Ser	p.P314S	ENST00000398568	NM_001042412.1	314	Ccc/Tcc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655387	67655387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	105	649	0	ENST00000264010.4:c.1250C>T	p.Thr417Ile	p.T417I	ENST00000264010	NM_006565.3	417	aCc/aTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81979794	81979794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	112	514	0	ENST00000359376.3:c.3496C>T	p.Pro1166Ser	p.P1166S	ENST00000359376	NM_002661.3	1166	Cct/Tct																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346430	89346430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	220	840	0	ENST00000301030.4:c.6520A>T	p.Ile2174Leu	p.I2174L	ENST00000301030	NM_001256183.1	2174	Ata/Tta																																																																														
NF1	4763	MSKCC	GRCh37	17	29528070	29528070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	41	172	0	ENST00000358273.4:c.1078C>T	p.Pro360Ser	p.P360S	ENST00000358273	NM_001042492.2	360	Cca/Tca																																																																														
NF1	4763	MSKCC	GRCh37	17	29654799	29654799	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267604793		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	110	396	0	ENST00000358273.4:c.5551C>T	p.Pro1851Ser	p.P1851S	ENST00000358273	NM_001042492.2	1851	Cct/Tct																																																																														
CDK12	51755	MSKCC	GRCh37	17	37667784	37667784	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	67	452	1	ENST00000447079.4:c.2669G>T	p.Arg890Leu	p.R890L	ENST00000447079	NM_015083.1	890	cGc/cTc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686955	37686955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	128	572	0	ENST00000447079.4:c.3859T>C	p.Ser1287Pro	p.S1287P	ENST00000447079	NM_015083.1	1287	Tcc/Ccc																																																																														
RARA	5914	MSKCC	GRCh37	17	38508728	38508728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	220	694	0	ENST00000254066.5:c.776C>T	p.Thr259Ile	p.T259I	ENST00000254066	NM_000964.3	259	aCc/aTc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40491339	40491339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	159	544	0	ENST00000264657.5:c.461G>A	p.Arg154Lys	p.R154K	ENST00000264657	NM_139276.2	154	aGa/aAa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761450	59761450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	88	514	0	ENST00000259008.2:c.2957C>T	p.Ser986Phe	p.S986F	ENST00000259008	NM_032043.2	986	tCc/tTc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78727927	78727927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	131	645	0	ENST00000306801.3:c.772C>T	p.Leu258Phe	p.L258F	ENST00000306801	NM_020761.2	258	Ctc/Ttc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78921078	78921079	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	226	751	0	ENST00000306801.3:c.3192_3193delinsTT	p.Pro1065Ser	p.P1065S	ENST00000306801	NM_020761.2	1064	aaCCct/aaTTct																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78921079	78921079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	226	751	0	ENST00000306801.3:c.3193C>T	p.Pro1065Ser	p.P1065S	ENST00000306801	NM_020761.2	1065	Cct/Tct																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39637903	39637903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	146	560	0	ENST00000262039.4:c.2320C>T	p.Pro774Ser	p.P774S	ENST00000262039	NM_002647.2	774	Cct/Tct																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191143	2191143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	247	997	0	ENST00000398665.3:c.397C>T	p.Pro133Ser	p.P133S	ENST00000398665	NM_032482.2	133	Ccc/Tcc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4095405	4095405	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	196	1049	0	ENST00000262948.5:c.1027C>T	p.Gln343Ter	p.Q343*	ENST00000262948	NM_030662.3	343	Cag/Tag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5240272	5240272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	269	982	0	ENST00000357368.4:c.1642C>T	p.Pro548Ser	p.P548S	ENST00000357368	NM_002850.3	548	Ccg/Tcg																																																																														
INSR	3643	MSKCC	GRCh37	19	7126627	7126627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	194	772	0	ENST00000302850.5:c.2981C>T	p.Ser994Phe	p.S994F	ENST00000302850	NM_000208.2	994	tCt/tTt																																																																														
INSR	3643	MSKCC	GRCh37	19	7143051	7143051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	187	764	0	ENST00000302850.5:c.2318C>T	p.Ala773Val	p.A773V	ENST00000302850	NM_000208.2	773	gCc/gTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284901	15284901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	248	958	0	ENST00000263388.2:c.4714G>A	p.Glu1572Lys	p.E1572K	ENST00000263388	NM_000435.2	1572	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288757	15288757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	56	185	0	ENST00000263388.2:c.3982C>T	p.Pro1328Ser	p.P1328S	ENST00000263388	NM_000435.2	1328	Ccg/Tcg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955175	17955175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	295	982	0	ENST00000458235.1:c.52C>T	p.Leu18Phe	p.L18F	ENST00000458235	NM_000215.3	18	Ctc/Ttc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212077	36212077	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs911830364		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	223	1054	0	ENST00000222270.7:c.1828C>T	p.Arg610Cys	p.R610C	ENST00000222270	NM_014727.1	610	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224713	36224714	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	277	1104	0	ENST00000222270.7:c.7099_7100delinsTT	p.Pro2367Phe	p.P2367F	ENST00000222270	NM_014727.1	2367	CCc/TTc																																																																														
AKT2	208	MSKCC	GRCh37	19	40743904	40743904	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757245351		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	339	835	2	ENST00000392038.2:c.803C>T	p.Ser268Leu	p.S268L	ENST00000392038	NM_001626.4	268	tCg/tTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796244	42796244	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	173	746	1	ENST00000575354.2:c.2893C>T	p.Gln965Ter	p.Q965*	ENST00000575354	NM_015125.3	965	Cag/Tag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463287	25463292	+	protein_altering_variant	In_Frame_Del	DEL	GGTAGA	GGTAGA	AGT			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	112	614	1	ENST00000264709.3:c.2201_2206delinsACT	p.Phe734_Arg736delinsTyrCys	p.F734_R736delinsYC	ENST00000264709	NM_175629.2	734	tTCTACCgc/tACTgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470994	25470995	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	223	828	0	ENST00000264709.3:c.766_767delinsTT	p.Pro256Phe	p.P256F	ENST00000264709	NM_175629.2	256	CCc/TTc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719177	61719177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	81	303	0	ENST00000401558.2:c.1880C>T	p.Pro627Leu	p.P627L	ENST00000401558	NM_003400.3	627	cCt/cTt																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881615	111881615	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866570504		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	216	795	0	ENST00000393256.3:c.293C>T	p.Ser98Phe	p.S98F	ENST00000393256	NM_006538.4	98	tCt/tTt																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634777	158634777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	93	415	0	ENST00000263640.3:c.409C>T	p.Leu137Phe	p.L137F	ENST00000263640	NM_001105.4	137	Ctt/Ttt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483922	212483922	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780689946		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	91	573	0	ENST00000342788.4:c.2281G>A	p.Ala761Thr	p.A761T	ENST00000342788	NM_005235.2	761	Gca/Aca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212568841	212568841	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1182226451		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	80	580	0	ENST00000342788.4:c.1277G>A	p.Arg426Lys	p.R426K	ENST00000342788	NM_005235.2	426	aGa/aAa																																																																														
BARD1	580	MSKCC	GRCh37	2	215645408	215645408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	151	665	0	ENST00000260947.4:c.1190C>T	p.Ser397Phe	p.S397F	ENST00000260947	NM_000465.2	397	tCt/tTt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660282	227660282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	197	751	0	ENST00000305123.5:c.3173C>T	p.Ser1058Phe	p.S1058F	ENST00000305123	NM_005544.2	1058	tCc/tTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561409	9561409	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	125	561	0	ENST00000353224.5:c.373T>C	p.Phe125Leu	p.F125L	ENST00000353224	NM_177990.2	125	Ttc/Ctc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877456	40877456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	141	573	0	ENST00000373198.4:c.2240C>T	p.Ser747Phe	p.S747F	ENST00000373198	NM_133170.3	747	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385186	41385187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	152	792	1	ENST00000373198.4:c.774_775delinsTT	p.Gln259Ter	p.Q259*	ENST00000373198	NM_133170.3	258	gcCCag/gcTTag																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845345	42845345	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	222	875	0	ENST00000398585.3:c.917G>A	p.Trp306Ter	p.W306*	ENST00000398585	NM_001135099.1	306	tGg/tAg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091145	29091145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	128	659	0	ENST00000328354.6:c.1345C>T	p.Pro449Ser	p.P449S	ENST00000328354	NM_007194.3	449	Cct/Tct																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458404	12458404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	210	795	1	ENST00000287820.6:c.1021G>A	p.Asp341Asn	p.D341N	ENST00000287820	NM_015869.4	341	Gac/Aac																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458434	12458434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	215	763	2	ENST00000287820.6:c.1051C>T	p.His351Tyr	p.H351Y	ENST00000287820	NM_015869.4	351	Cac/Tac																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933740	49933740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	277	928	0	ENST00000296474.3:c.2537G>A	p.Gly846Glu	p.G846E	ENST00000296474	NM_002447.2	846	gGg/gAg																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73096348	73096348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	21	64	0	ENST00000356692.5:c.128C>T	p.Ser43Phe	p.S43F	ENST00000356692		43	tCc/tTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499490	89499490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	110	483	0	ENST00000336596.2:c.2660G>A	p.Ser887Asn	p.S887N	ENST00000336596	NM_005233.5	887	aGc/aAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528570	89528570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	69	262	0	ENST00000336596.2:c.2870C>T	p.Thr957Ile	p.T957I	ENST00000336596	NM_005233.5	957	aCc/aTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670768	134670768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	173	584	2	ENST00000398015.3:c.679C>T	p.Pro227Ser	p.P227S	ENST00000398015	NM_004441.4	227	Ccc/Tcc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825302	134825302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	120	369	0	ENST00000398015.3:c.818G>A	p.Gly273Glu	p.G273E	ENST00000398015	NM_004441.4	273	gGg/gAg																																																																														
ATR	545	MSKCC	GRCh37	3	142259836	142259836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	107	525	0	ENST00000350721.4:c.3491C>T	p.Pro1164Leu	p.P1164L	ENST00000350721	NM_001184.3	1164	cCc/cTc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169953053	169953054	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	108	574	1	ENST00000295797.4:c.137_138delinsTT	p.Ser46Phe	p.S46F	ENST00000295797	NM_002740.5	46	tCC/tTT																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146596	185146596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	153	701	1	ENST00000265026.3:c.227C>T	p.Ser76Phe	p.S76F	ENST00000265026	NM_004721.4	76	tCc/tTc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198124	185198124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	135	569	0	ENST00000265026.3:c.2606G>A	p.Ser869Asn	p.S869N	ENST00000265026	NM_004721.4	869	aGt/aAt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1959686	1959686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772239992		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	82	361	0	ENST00000382895.3:c.2908C>T	p.Arg970Cys	p.R970C	ENST00000382895	NM_133330.2	970	Cgt/Tgt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133898	55133898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	76	358	0	ENST00000257290.5:c.1111C>T	p.Gln371Ter	p.Q371*	ENST00000257290	NM_006206.4	371	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584575	187584575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	41	482	2	ENST00000441802.2:c.3458C>T	p.Pro1153Leu	p.P1153L	ENST00000441802	NM_005245.3	1153	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295240	1295240	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1481772358		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	114	593	1				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35867421	35867421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1354581284		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	54	442	0	ENST00000303115.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000303115	NM_002185.3	79	Gag/Aag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876418	35876418	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761882064		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	139	691	0	ENST00000303115.3:c.1210C>T	p.Leu404Phe	p.L404F	ENST00000303115	NM_002185.3	404	Ctc/Ttc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751234	57751234	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1226697571		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	64	356	1	ENST00000274289.3:c.1633C>T	p.His545Tyr	p.H545Y	ENST00000274289	NM_006622.3	545	Cac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112174278	112174278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	66	344	0	ENST00000257430.4:c.2987G>T	p.Ser996Ile	p.S996I	ENST00000257430	NM_000038.5	996	aGt/aTt																																																																														
APC	324	MSKCC	GRCh37	5	112178465	112178466	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	104	441	0	ENST00000257430.4:c.7174_7175delinsTT	p.Pro2392Leu	p.P2392L	ENST00000257430	NM_000038.5	2392	CCa/TTa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149510223	149510223	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	136	689	2	ENST00000261799.4:c.1246C>A	p.Pro416Thr	p.P416T	ENST00000261799	NM_002609.3	416	Cct/Act																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696769	176696769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	97	395	0	ENST00000439151.2:c.5470G>A	p.Asp1824Asn	p.D1824N	ENST00000439151	NM_022455.4	1824	Gat/Aat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721237	176721237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767645475		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	82	469	0	ENST00000439151.2:c.6868C>T	p.Pro2290Ser	p.P2290S	ENST00000439151	NM_022455.4	2290	Ccc/Tcc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045793	180045793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	235	915	0	ENST00000261937.6:c.2978G>A	p.Arg993Lys	p.R993K	ENST00000261937	NM_182925.4	993	aGg/aAg																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225407	26225407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	110	300	0	ENST00000360408.1:c.25C>T	p.Arg9Cys	p.R9C	ENST00000360408	NM_003532.2	9	Cgt/Tgt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680529	30680529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	243	614	0	ENST00000376406.3:c.1190C>T	p.Ser397Phe	p.S397F	ENST00000376406	NM_014641.2	397	tCc/tTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168737	32168737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	534	859	0	ENST00000375023.3:c.4186C>T	p.His1396Tyr	p.H1396Y	ENST00000375023	NM_004557.3	1396	Cac/Tac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169887	32169887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	467	925	2	ENST00000375023.3:c.3721G>A	p.Asp1241Asn	p.D1241N	ENST00000375023	NM_004557.3	1241	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184930	32184930	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	174	629	0	ENST00000375023.3:c.1738G>A	p.Gly580Ser	p.G580S	ENST00000375023	NM_004557.3	580	Ggc/Agc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94128966	94128966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	91	382	1	ENST00000369303.4:c.94G>A	p.Glu32Lys	p.E32K	ENST00000369303	NM_004440.3	32	Gaa/Aaa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547420	106547420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	86	337	0	ENST00000369096.4:c.657G>A	p.Met219Ile	p.M219I	ENST00000369096	NM_001198.3	219	atG/atA																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553044	106553044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	205	754	1	ENST00000369096.4:c.1009C>T	p.Pro337Ser	p.P337S	ENST00000369096	NM_001198.3	337	Ccc/Tcc																																																																														
SESN1	27244	MSKCC	GRCh37	6	109311867	109311867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	92	611	0	ENST00000436639.2:c.1405C>T	p.His469Tyr	p.H469Y	ENST00000436639	NM_014454.2	469	Cac/Tac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686838	117686838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868806134		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	108	483	0	ENST00000368508.3:c.2879G>A	p.Gly960Glu	p.G960E	ENST00000368508	NM_002944.2	960	gGa/gAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332892	152332892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	126	477	1	ENST00000206249.3:c.1198G>A	p.Gly400Arg	p.G400R	ENST00000206249	NM_000125.3	400	Ggg/Agg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157222567	157222567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	198	678	0	ENST00000346085.5:c.1834C>T	p.Pro612Ser	p.P612S	ENST00000346085	NM_020732.3	612	Cca/Tca																																																																														
PARK2	0	MSKCC	GRCh37	6	162622282	162622282	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1321208493		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	84	381	0	ENST00000366898.1:c.415G>A	p.Gly139Ser	p.G139S	ENST00000366898	NM_004562.2	139	Ggt/Agt																																																																														
PARK2	0	MSKCC	GRCh37	6	162683729	162683729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	138	634	0	ENST00000366898.1:c.240G>A	p.Met80Ile	p.M80I	ENST00000366898	NM_004562.2	80	atG/atA																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729451	41729451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	162	681	0	ENST00000242208.4:c.1078G>A	p.Gly360Ser	p.G360S	ENST00000242208	NM_002192.2	360	Ggc/Agc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729652	41729652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	165	595	0	ENST00000242208.4:c.877C>T	p.Leu293Phe	p.L293F	ENST00000242208	NM_002192.2	293	Ctc/Ttc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730006	41730006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	162	709	0	ENST00000242208.4:c.523C>T	p.Leu175Phe	p.L175F	ENST00000242208	NM_002192.2	175	Ctc/Ttc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227896	55227896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	51	463	0	ENST00000275493.2:c.1363G>A	p.Glu455Lys	p.E455K	ENST00000275493	NM_005228.3	455	Gag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509620	106509621	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	167	634	2	ENST00000359195.3:c.1614_1615delinsAA	p.Glu539Lys	p.E539K	ENST00000359195	NM_002649.2	538	ccGGaa/ccAAaa																																																																														
MET	4233	MSKCC	GRCh37	7	116339553	116339553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	129	319	0	ENST00000397752.3:c.415G>A	p.Gly139Arg	p.G139R	ENST00000397752	NM_000245.2	139	Ggg/Agg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194773	29194773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	230	987	1	ENST00000240100.2:c.955C>T	p.Pro319Ser	p.P319S	ENST00000240100	NM_001394.6	319	Ccc/Tcc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205280	38205280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	218	1095	0	ENST00000317025.8:c.410C>T	p.Pro137Leu	p.P137L	ENST00000317025	NM_023034.1	137	cCt/cTt																																																																														
LYN	4067	MSKCC	GRCh37	8	56910933	56910933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201895605		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	188	655	1	ENST00000519728.1:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000519728	NM_002350.3	360	cGg/cAg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981636	70981636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1441295182		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	297	1133	0	ENST00000276594.2:c.460C>T	p.Pro154Ser	p.P154S	ENST00000276594	NM_024504.3	154	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517958	8517958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1425203347		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	91	442	0	ENST00000356435.5:c.1433C>T	p.Thr478Ile	p.T478I	ENST00000356435		478	aCt/aTt																																																																														
TEK	7010	MSKCC	GRCh37	9	27197556	27197556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	70	655	1	ENST00000380036.4:c.1868G>A	p.Gly623Glu	p.G623E	ENST00000380036	NM_000459.3	623	gGg/gAg																																																																														
TEK	7010	MSKCC	GRCh37	9	27212725	27212725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	111	909	0	ENST00000380036.4:c.2707G>A	p.Glu903Lys	p.E903K	ENST00000380036	NM_000459.3	903	Gag/Aag																																																																														
TEK	7010	MSKCC	GRCh37	9	27212810	27212810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	122	820	1	ENST00000380036.4:c.2792G>A	p.Ser931Asn	p.S931N	ENST00000380036	NM_000459.3	931	aGc/aAc																																																																														
FANCC	2176	MSKCC	GRCh37	9	97933383	97933383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	86	452	0	ENST00000289081.3:c.499A>G	p.Asn167Asp	p.N167D	ENST00000289081	NM_000136.2	167	Aat/Gat																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912095	127912095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	62	335	0	ENST00000373547.4:c.775C>T	p.Pro259Ser	p.P259S	ENST00000373547	NM_002721.4	259	Cct/Tct																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128347961	128347961	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751738081		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	207	890	1	ENST00000265960.3:c.544C>T	p.Pro182Ser	p.P182S	ENST00000265960	NM_001006617.1	182	Cct/Tct																																																																														
TSC1	7248	MSKCC	GRCh37	9	135776208	135776208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	113	493	0	ENST00000298552.3:c.2519C>T	p.Ser840Leu	p.S840L	ENST00000298552	NM_001162426.1	840	tCg/tTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391746	139391746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	231	941	0	ENST00000277541.6:c.6445C>T	p.Leu2149Phe	p.L2149F	ENST00000277541	NM_017617.3	2149	Ctc/Ttc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44935995	44935995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	95	338	0	ENST00000377967.4:c.2756C>T	p.Pro919Leu	p.P919L	ENST00000377967	NM_021140.2	919	cCa/cTa																																																																														
ARAF	369	MSKCC	GRCh37	X	47424707	47424707	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371247311		P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	222	445	1	ENST00000377045.4:c.515C>T	p.Ser172Leu	p.S172L	ENST00000377045	NM_001654.4	172	tCg/tTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409801	63409802	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	105	289	0	ENST00000330258.3:c.3365_3366delinsTT	p.Thr1122Ile	p.T1122I	ENST00000330258	NM_152424.3	1122	aCC/aTT																																																																														
BTK	695	MSKCC	GRCh37	X	100625048	100625048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	135	315	0	ENST00000308731.7:c.329C>T	p.Pro110Leu	p.P110L	ENST00000308731	NM_000061.2	110	cCt/cTt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123164875	123164875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	89	200	0	ENST00000218089.9:c.188C>T	p.Pro63Leu	p.P63L	ENST00000218089	NM_001042749.1	63	cCt/cTt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463287	25463289	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-			P-0041437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	108	607	0	ENST00000264709.3:c.2204_2206del	p.Tyr735_Arg736delinsCys	p.Y735_R736delinsC	ENST00000264709	NM_175629.2	735	tACCgc/tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	56	363	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	92	446	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25468912	25468912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780672407		P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	164	744	0	ENST00000264709.3:c.1451G>A	p.Arg484Gln	p.R484Q	ENST00000264709	NM_175629.2	484	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577106	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCAT			P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	76	761	0	ENST00000269305.4:c.832_833insATGGTAATCTACTGGGACGGAACAGCTTTGAGGTGCGTGTTTGTGCCTGTC	p.Cys277_Pro278insHisGlyAsnLeuLeuGlyArgAsnSerPheGluValArgValCysAlaCys	p.C277_P278insHGNLLGRNSFEVRVCAC	ENST00000269305	NM_001126112.2	278	cct/cATGGTAATCTACTGGGACGGAACAGCTTTGAGGTGCGTGTTTGTGCCTGTCct																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011106	12011106	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	69	293	0	ENST00000353533.5:c.514-1G>A		p.X172_splice	ENST00000353533	NM_003010.3	172																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554451	63554452	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	160	770	1	ENST00000307078.5:c.287_288delinsTT	p.Arg96Leu	p.R96L	ENST00000307078	NM_004655.3	96	cGA/cTT																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31424568	31424569	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	130	744	0	ENST00000344624.3:c.3225_3226dup	p.Glu1076AlafsTer42	p.E1076Afs*42	ENST00000344624		1076	gaa/gCGaa																																																																														
APC	324	MSKCC	GRCh37	5	112174774	112174774	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	71	360	0	ENST00000257430.4:c.3484del	p.Tyr1162IlefsTer3	p.Y1162Ifs*3	ENST00000257430	NM_000038.5	1161	aaT/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	83	508	0				ENST00000310581	NM_198253.2																																																																																
RHOA	387	MSKCC	GRCh37	3	49405951	49405951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	34	674	2	ENST00000418115.1:c.187C>A	p.Gln63Lys	p.Q63K	ENST00000418115	NM_001664.2	63	Cag/Aag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786205227		P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	31	814	3	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738828	145738828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201883228		P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	124	1002	0	ENST00000428558.2:c.2237C>T	p.Ala746Val	p.A746V	ENST00000428558	NM_004260.3	746	gCg/gTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215276	123215276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	45	386	0	ENST00000218089.9:c.2822C>T	p.Ser941Leu	p.S941L	ENST00000218089	NM_001042749.1	941	tCa/tTa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276400	115276400	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs534189855		P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	81	475	0	ENST00000438362.2:c.928G>C	p.Glu310Gln	p.E310Q	ENST00000438362	NM_001242891.1	310	Gaa/Caa																																																																														
HIST2H3D	653604	MSKCC	GRCh37	1	149784867	149784867	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	40	292	0	ENST00000331491.1:c.370G>C	p.Asp124His	p.D124H	ENST00000331491	NM_001123375.2	124	Gac/Cac																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981119	201981119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	120	858	0	ENST00000359651.3:c.198C>G	p.Phe66Leu	p.F66L	ENST00000359651		66	ttC/ttG																																																																														
SUFU	51684	MSKCC	GRCh37	10	104359190	104359190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	87	478	1	ENST00000369902.3:c.911A>T	p.Asp304Val	p.D304V	ENST00000369902	NM_016169.3	304	gAc/gTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343514	118343514	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	83	462	0	ENST00000534358.1:c.1640C>G	p.Ser547Ter	p.S547*	ENST00000534358	NM_005933.3	547	tCa/tGa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482340	56482341	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	43	566	0	ENST00000267101.3:c.888_889delinsTT	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	296	gtGGat/gtTTat																																																																														
MGA	23269	MSKCC	GRCh37	15	42042076	42042076	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1337789886		P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	76	542	0	ENST00000219905.7:c.6271G>C	p.Glu2091Gln	p.E2091Q	ENST00000219905	NM_001164273.1	2091	Gaa/Caa																																																																														
MGA	23269	MSKCC	GRCh37	15	42058693	42058693	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	54	269	0	ENST00000219905.7:c.8413G>C	p.Asp2805His	p.D2805H	ENST00000219905	NM_001164273.1	2805	Gat/Cat																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946800	17946800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	126	989	0	ENST00000458235.1:c.1847G>C	p.Gly616Ala	p.G616A	ENST00000458235	NM_000215.3	616	gGc/gCc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976406	18976406	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1327509370		P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	116	1137	0	ENST00000262803.5:c.3056G>C	p.Gly1019Ala	p.G1019A	ENST00000262803	NM_002911.3	1019	gGa/gCa																																																																														
BARD1	580	MSKCC	GRCh37	2	215657132	215657132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	69	354	0	ENST00000260947.4:c.253G>A	p.Val85Met	p.V85M	ENST00000260947	NM_000465.2	85	Gtg/Atg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651392	52651392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	60	476	0	ENST00000394830.3:c.1704G>C	p.Leu568Phe	p.L568F	ENST00000394830	NM_018313.4	568	ttG/ttC																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149499032	149499032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	132	635	0	ENST00000261799.4:c.2796G>C	p.Glu932Asp	p.E932D	ENST00000261799	NM_002609.3	932	gaG/gaC																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031889	26031889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	35	252	0	ENST00000244661.2:c.400G>A	p.Glu134Lys	p.E134K	ENST00000244661	NM_003537.3	134	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859377	151859377	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	53	485	0	ENST00000262189.6:c.11285C>G	p.Ser3762Cys	p.S3762C	ENST00000262189	NM_170606.2	3762	tCt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0041541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	75	247	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861144	57861144	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373249560		P-0041541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	225	658	0	ENST00000228682.2:c.941G>A	p.Arg314His	p.R314H	ENST00000228682	NM_005269.2	314	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0041541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	213	529	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27107093	27107093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	474	682	0	ENST00000324856.7:c.6706del	p.Arg2236AlafsTer31	p.R2236Afs*31	ENST00000324856	NM_006015.4	2235	gCc/gc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696770	176696770	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	39	394	0	ENST00000439151.2:c.5471A>T	p.Asp1824Val	p.D1824V	ENST00000439151	NM_022455.4	1824	gAt/gTt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222638	53222638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	342	982	1	ENST00000375401.3:c.4298G>A	p.Arg1433Lys	p.R1433K	ENST00000375401	NM_004187.3	1433	aGg/aAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76907620	76907620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	148	445	0	ENST00000373344.5:c.4541G>T	p.Arg1514Leu	p.R1514L	ENST00000373344	NM_000489.3	1514	cGa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0041550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	48	502	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
IL10	3586	MSKCC	GRCh37	1	206945656	206945656	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767158016		P-0041550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	60	497	0	ENST00000423557.1:c.125G>A	p.Arg42Gln	p.R42Q	ENST00000423557	NM_000572.2	42	cGa/cAa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637555	52637555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	70	346	0	ENST00000394830.3:c.2761C>T	p.Arg921Ter	p.R921*	ENST00000394830	NM_018313.4	921	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139408984	139408984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	143	686	0	ENST00000277541.6:c.2185G>A	p.Ala729Thr	p.A729T	ENST00000277541	NM_017617.3	729	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106211	27106211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	95	604	0	ENST00000324856.7:c.5822T>A	p.Phe1941Tyr	p.F1941Y	ENST00000324856	NM_006015.4	1941	tTt/tAt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562624	21562624	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	105	403	0	ENST00000382592.4:c.1295T>A	p.Val432Glu	p.V432E	ENST00000382592	NM_014572.2	432	gTg/gAg																																																																														
VHL	7428	MSKCC	GRCh37	3	10191516	10191516	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1437199117		P-0041599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	111	476	0	ENST00000256474.2:c.509del	p.Val170AlafsTer32	p.V170Afs*32	ENST00000256474	NM_000551.3	170	gTc/gc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47059230	47059230	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs777018406		P-0041599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	100	346	0	ENST00000409792.3:c.7432-1G>A		p.X2478_splice	ENST00000409792	NM_014159.6	2478																																																																															
CARD11	84433	MSKCC	GRCh37	7	2978321	2978321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs138920531		P-0041618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	113	655	0	ENST00000396946.4:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000396946	NM_032415.4	337	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390740	118390740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	207	420	0	ENST00000534358.1:c.11390A>G	p.Asn3797Ser	p.N3797S	ENST00000534358	NM_005933.3	3797	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579355	7579362	+	frameshift_variant	Frame_Shift_Del	DEL	AGACGGAA	AGACGGAA	-			P-0041618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	406	821	0	ENST00000269305.4:c.325_332del	p.Phe109GlyfsTer37	p.F109Gfs*37	ENST00000269305	NM_001126112.2	109	TTCCGTCTg/g																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945731	17945731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	305	765	0	ENST00000458235.1:c.2129G>A	p.Gly710Asp	p.G710D	ENST00000458235	NM_000215.3	710	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1278905	1278905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	91	593	0	ENST00000310581.5:c.2137G>T	p.Val713Leu	p.V713L	ENST00000310581	NM_198253.2	713	Gtg/Ttg																																																																														
APC	324	MSKCC	GRCh37	5	112177264	112177279	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCTGACTCACAG	GCCCCCTGACTCACAG	-			P-0041618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	47	334	0	ENST00000257430.4:c.5974_5989del	p.Pro1992GlufsTer47	p.P1992Efs*47	ENST00000257430	NM_000038.5	1991	gaGCCCCCTGACTCACAG/ga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231012	98231031	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCTTAAGTTGTGGCAGATTA	CCTTAAGTTGTGGCAGATTA	-			P-0041618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	99	471	0	ENST00000331920.6:c.2250+2_2250+21del		p.X750_splice	ENST00000331920	NM_000264.3	750																																																																															
VHL	7428	MSKCC	GRCh37	3	10183755	10183757	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs1319640380		P-0041690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	91	638	0	ENST00000256474.2:c.227_229del	p.Phe76del	p.F76del	ENST00000256474	NM_000551.3	75	aTCTtc/atc																																																																														
ATM	472	MSKCC	GRCh37	11	108201089	108201089	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779865		P-0041690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	30	294	0	ENST00000278616.4:c.7456C>T	p.Arg2486Ter	p.R2486*	ENST00000278616	NM_000051.3	2486	Cga/Tga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52621381	52621382	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0041690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	56	325	0	ENST00000394830.3:c.3035_3036delinsAT	p.Val1012Asp	p.V1012D	ENST00000394830	NM_018313.4	1012	gTC/gAT																																																																														
ATRX	546	MSKCC	GRCh37	X	76763884	76763884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	26	503	0	ENST00000373344.5:c.7424C>T	p.Ala2475Val	p.A2475V	ENST00000373344	NM_000489.3	2475	gCa/gTa																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	168	423	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659245	86659245	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	32	277	1	ENST00000274376.6:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000274376	NM_002890.2	512	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	125	868	0	ENST00000267101.3:c.310G>C	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ctg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	58	415	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612752	228612752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	244	771	0	ENST00000366696.1:c.275C>T	p.Ala92Val	p.A92V	ENST00000366696	NM_003493.2	92	gCg/gTg																																																																														
ATM	472	MSKCC	GRCh37	11	108196191	108196191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	150	553	0	ENST00000278616.4:c.6727C>T	p.Gln2243Ter	p.Q2243*	ENST00000278616	NM_000051.3	2243	Caa/Taa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28610118	28610118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	132	614	0	ENST00000241453.7:c.1372C>T	p.Pro458Ser	p.P458S	ENST00000241453	NM_004119.2	458	Cca/Tca																																																																														
CUL3	8452	MSKCC	GRCh37	2	225365137	225365137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	63	486	0	ENST00000264414.4:c.1553C>T	p.Ala518Val	p.A518V	ENST00000264414	NM_003590.4	518	gCc/gTc																																																																														
FYN	2534	MSKCC	GRCh37	6	112020808	112020808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	73	412	0	ENST00000368678.4:c.763G>A	p.Gly255Arg	p.G255R	ENST00000368678		255	Gga/Aga																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815601	139815601	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	130	783	0	ENST00000247668.2:c.1072A>T	p.Ile358Phe	p.I358F	ENST00000247668	NM_021138.3	358	Atc/Ttc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11313952	11313952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	181	843	0	ENST00000361445.4:c.784C>T	p.His262Tyr	p.H262Y	ENST00000361445	NM_004958.3	262	Cat/Tat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255014	16255014	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778549803		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	116	424	0	ENST00000375759.3:c.2279C>T	p.Ser760Leu	p.S760L	ENST00000375759	NM_015001.2	760	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416104	49416104	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	228	656	0	ENST00000301067.7:c.16371T>G	p.Asn5457Lys	p.N5457K	ENST00000301067	NM_003482.3	5457	aaT/aaG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426174	49426174	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	202	889	1	ENST00000301067.7:c.12314T>C	p.Val4105Ala	p.V4105A	ENST00000301067	NM_003482.3	4105	gTt/gCt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859574	57859574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	102	713	0	ENST00000228682.2:c.628C>T	p.Pro210Ser	p.P210S	ENST00000228682	NM_005269.2	210	Ccc/Tcc																																																																														
POLE	5426	MSKCC	GRCh37	12	133218320	133218320	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1285538355		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	338	924	0	ENST00000320574.5:c.5291C>T	p.Ala1764Val	p.A1764V	ENST00000320574	NM_006231.2	1764	gCc/gTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133225568	133225568	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	116	920	0	ENST00000320574.5:c.4096T>A	p.Phe1366Ile	p.F1366I	ENST00000320574	NM_006231.2	1366	Ttc/Atc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28624322	28624322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866313760		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	247	608	0	ENST00000241453.7:c.652G>A	p.Glu218Lys	p.E218K	ENST00000241453	NM_004119.2	218	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001434	29001434	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	75	393	0	ENST00000282397.4:c.1298A>C	p.Lys433Thr	p.K433T	ENST00000282397	NM_002019.4	433	aAg/aCg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008327	29008327	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	91	350	0	ENST00000282397.4:c.544A>T	p.Lys182Ter	p.K182*	ENST00000282397	NM_002019.4	182	Aaa/Taa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041183	29041183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	144	791	0	ENST00000282397.4:c.245G>A	p.Gly82Glu	p.G82E	ENST00000282397	NM_002019.4	82	gGa/gAa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068872	30068872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	148	685	0	ENST00000331968.5:c.2057T>C	p.Leu686Ser	p.L686S	ENST00000331968	NM_002742.2	686	tTa/tCa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614532	38614533	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	143	743	1	ENST00000299084.4:c.298_299delinsAC	p.Gly100Thr	p.G100T	ENST00000299084	NM_152594.2	100	GGt/ACt																																																																														
MGA	23269	MSKCC	GRCh37	15	42032353	42032353	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779785984		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	171	627	0	ENST00000219905.7:c.4537C>T	p.Arg1513Cys	p.R1513C	ENST00000219905	NM_001164273.1	1513	Cgc/Tgc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43766957	43766957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	44	229	0	ENST00000382044.4:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000382044	NM_001141980.1	365	tCa/tTa																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630407	90630407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	150	755	0	ENST00000330062.3:c.904G>A	p.Gly302Ser	p.G302S	ENST00000330062	NM_002168.2	302	Ggt/Agt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99491843	99491843	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	110	730	0	ENST00000268035.6:c.3628G>T	p.Glu1210Ter	p.E1210*	ENST00000268035	NM_000875.3	1210	Gag/Tag																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2094704	2094704	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	177	988	0	ENST00000219066.1:c.476T>G	p.Leu159Arg	p.L159R	ENST00000219066	NM_002528.5	159	cTg/cGg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639374	3639374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	192	969	1	ENST00000294008.3:c.4265C>T	p.Pro1422Leu	p.P1422L	ENST00000294008	NM_032444.2	1422	cCa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892299	9892299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs796052549		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	177	512	0	ENST00000330684.3:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000330684	NM_001134407.1	731	Gat/Aat																																																																														
NF1	4763	MSKCC	GRCh37	17	29588830	29588830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	98	424	0	ENST00000358273.4:c.4679C>T	p.Ser1560Phe	p.S1560F	ENST00000358273	NM_001042492.2	1560	tCc/tTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879857	37879857	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	380	845	0	ENST00000269571.5:c.2152A>T	p.Thr718Ser	p.T718S	ENST00000269571		718	Acg/Tcg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245006	41245006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	359	866	0	ENST00000357654.3:c.2542G>A	p.Glu848Lys	p.E848K	ENST00000357654	NM_007294.3	848	Gaa/Aaa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761133	59761133	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768065626		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	169	697	0	ENST00000259008.2:c.3274C>T	p.Pro1092Ser	p.P1092S	ENST00000259008	NM_032043.2	1092	Ccg/Tcg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119234	3119234	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775040372		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	393	990	0	ENST00000078429.4:c.766C>T	p.Arg256Trp	p.R256W	ENST00000078429	NM_002067.2	256	Cgg/Tgg																																																																														
INSR	3643	MSKCC	GRCh37	19	7172347	7172347	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	169	681	0	ENST00000302850.5:c.1222T>A	p.Phe408Ile	p.F408I	ENST00000302850	NM_000208.2	408	Ttc/Atc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291170	10291171	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	208	942	1	ENST00000340748.4:c.300_301delinsTT	p.Arg101Trp	p.R101W	ENST00000340748		100	aaCCgg/aaTTgg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260213	19260213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	190	924	0	ENST00000162023.5:c.80G>A	p.Gly27Glu	p.G27E	ENST00000162023		27	gGg/gAg																																																																														
AXL	558	MSKCC	GRCh37	19	41758775	41758775	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374737642		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	400	967	0	ENST00000301178.4:c.1829G>A	p.Arg610Gln	p.R610Q	ENST00000301178	NM_021913.4	610	cGa/cAa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086010	16086010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	104	751	0	ENST00000281043.3:c.1186G>A	p.Asp396Asn	p.D396N	ENST00000281043	NM_005378.4	396	Gac/Aac																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086052	16086052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	130	795	0	ENST00000281043.3:c.1228G>A	p.Glu410Lys	p.E410K	ENST00000281043	NM_005378.4	410	Gag/Aag																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622630	158622630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	241	598	1	ENST00000263640.3:c.869C>T	p.Ser290Leu	p.S290L	ENST00000263640	NM_001105.4	290	tCg/tTg																																																																														
NF2	4771	MSKCC	GRCh37	22	30057302	30057302	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74315496		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	239	557	0	ENST00000338641.4:c.784C>T	p.Arg262Ter	p.R262*	ENST00000338641	NM_000268.3	262	Cga/Tga																																																																														
RAC2	5880	MSKCC	GRCh37	22	37627277	37627277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2676	202	987	0	ENST00000249071.6:c.442G>A	p.Glu148Lys	p.E148K	ENST00000249071	NM_002872.4	148	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	63	393	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391084	89391084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	357	851	0	ENST00000336596.2:c.1150C>T	p.Pro384Ser	p.P384S	ENST00000336596	NM_005233.5	384	Cct/Tct																																																																														
ATR	545	MSKCC	GRCh37	3	142238559	142238559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	84	339	1	ENST00000350721.4:c.4334G>A	p.Arg1445Lys	p.R1445K	ENST00000350721	NM_001184.3	1445	aGa/aAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937476	178937476	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	138	695	0	ENST00000263967.3:c.1864T>G	p.Tyr622Asp	p.Y622D	ENST00000263967	NM_006218.2	622	Tat/Gat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532623	187532623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1331743336		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	235	518	1	ENST00000441802.2:c.9770G>A	p.Arg3257Gln	p.R3257Q	ENST00000441802	NM_005245.3	3257	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540005	187540005	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	118	518	0	ENST00000441802.2:c.7735T>A	p.Phe2579Ile	p.F2579I	ENST00000441802	NM_005245.3	2579	Ttc/Atc																																																																														
TERT	7015	MSKCC	GRCh37	5	1264520	1264520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	107	582	0	ENST00000310581.5:c.2842A>T	p.Ser948Cys	p.S948C	ENST00000310581	NM_198253.2	948	Agc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	144	478	1				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112179054	112179054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	112	407	0	ENST00000257430.4:c.7763A>G	p.Asp2588Gly	p.D2588G	ENST00000257430	NM_000038.5	2588	gAt/gGt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923285	131923285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	139	262	0	ENST00000265335.6:c.788C>T	p.Ser263Phe	p.S263F	ENST00000265335		263	tCt/tTt																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267600971		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	709	1017	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
ETV1	2115	MSKCC	GRCh37	7	13978784	13978784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	220	722	1	ENST00000405192.2:c.323C>T	p.Pro108Leu	p.P108L	ENST00000405192	NM_001163147.1	108	cCc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913355		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	97	531	1	ENST00000288602.6:c.1406G>A	p.Gly469Glu	p.G469E	ENST00000288602	NM_004333.4	469	gGa/gAa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38157094	38157095	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	153	714	3	ENST00000317025.8:c.2625_2626delinsAA	p.Asp876Asn	p.D876N	ENST00000317025	NM_023034.1	875	caGGac/caAAac																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970945	70970945	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1242917883		P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	177	892	2	ENST00000276594.2:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000276594	NM_024504.3	439	cGa/cAa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141595234	141595234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	170	807	0	ENST00000220592.5:c.199C>T	p.Pro67Ser	p.P67S	ENST00000220592	NM_012154.3	67	Ccg/Tcg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918578	44918578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	96	537	0	ENST00000377967.4:c.1061C>T	p.Ala354Val	p.A354V	ENST00000377967	NM_021140.2	354	gCc/gTc																																																																														
AR	367	MSKCC	GRCh37	X	66766136	66766136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	157	770	0	ENST00000374690.3:c.1148C>T	p.Pro383Leu	p.P383L	ENST00000374690	NM_000044.3	383	cCc/cTc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0041740-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			469	27	405	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6414399	6414399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0041740-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			373	61	232	0	ENST00000356142.4:c.33C>A	p.Asp11Glu	p.D11E	ENST00000356142	NM_018890.3	11	gaC/gaA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425787	49425788	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041740-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			543	33	751	0	ENST00000301067.7:c.12700_12701del	p.Gln4235GlyfsTer98	p.Q4235Gfs*98	ENST00000301067	NM_003482.3	4234	AGt/t																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444181	49444181	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041740-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	55	1054	1	ENST00000301067.7:c.3190del	p.Val1064SerfsTer55	p.V1064Sfs*55	ENST00000301067	NM_003482.3	1064	Gtc/tc																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226252155	226252156	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0041740-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			228	17	153	0	ENST00000366813.1:c.103_104delinsTT	p.Gly35Leu	p.G35L	ENST00000366813		35	GGg/TTg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741846	17741846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041740-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			201	20	182	0	ENST00000250003.3:c.517G>T	p.Gly173Cys	p.G173C	ENST00000250003	NM_002478.4	173	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	288	834	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	259	764	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	107	417	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112154935	112154935	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	203	656	0	ENST00000257430.4:c.1206del	p.Glu403LysfsTer51	p.E403Kfs*51	ENST00000257430	NM_000038.5	402	cgT/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913528		P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	125	501	2	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs121913468		P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	197	537	1	ENST00000269571.5:c.2305G>A	p.Asp769Asn	p.D769N	ENST00000269571		769	Gac/Aac																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966652	36966652	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749999635		P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	190	535	0	ENST00000358127.4:c.674G>A	p.Arg225Gln	p.R225Q	ENST00000358127	NM_001280556.1	225	cGg/cAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280683	41280683	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	122	689	0	ENST00000349496.5:c.2199del	p.Met734Ter	p.M734*	ENST00000349496	NM_001904.3	732	gaC/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs1057517840		P-0041886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	251	793	0	ENST00000269305.4:c.626_627del	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913275		P-0041886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	397	177	0	ENST00000263967.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602863	10602863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	307	1045	3	ENST00000171111.5:c.715G>A	p.Val239Met	p.V239M	ENST00000171111	NM_203500.1	239	Gtg/Atg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937914	36937914	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	91	1038	0	ENST00000361632.4:c.922C>G	p.Arg308Gly	p.R308G	ENST00000361632		308	Cgc/Ggc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428205	49428205	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	106	837	1	ENST00000301067.7:c.10495C>T	p.Gln3499Ter	p.Q3499*	ENST00000301067	NM_003482.3	3499	Cag/Tag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	88	454	0	ENST00000359013.4:c.1658G>C	p.Arg553Pro	p.R553P	ENST00000359013	NM_001024847.2	553	cGt/cCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0041958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	79	621	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
MPL	4352	MSKCC	GRCh37	1	43818424	43818424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	36	508	0	ENST00000372470.3:c.1889G>C	p.Ser630Thr	p.S630T	ENST00000372470	NM_005373.2	630	aGc/aCc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89811465	89811465	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	29	611	0	ENST00000389301.3:c.3528C>G	p.Ser1176Arg	p.S1176R	ENST00000389301	NM_000135.2	1176	agC/agG																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15838416	15838416	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	19	364	0	ENST00000307771.7:c.914C>G	p.Thr305Ser	p.T305S	ENST00000307771	NM_005089.3	305	aCc/aGc																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	149	277	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	134	458	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	481	930	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913255		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	336	617	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584696	187584696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144526682		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	242	574	0	ENST00000441802.2:c.3337G>A	p.Asp1113Asn	p.D1113N	ENST00000441802	NM_005245.3	1113	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431178	49431178	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs793888512		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	332	770	0	ENST00000301067.7:c.9961C>T	p.Arg3321Ter	p.R3321*	ENST00000301067	NM_003482.3	3321	Cga/Tga																																																																														
INSR	3643	MSKCC	GRCh37	19	7122706	7122706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	183	768	0	ENST00000302850.5:c.3448C>G	p.Leu1150Val	p.L1150V	ENST00000302850	NM_000208.2	1150	Ctg/Gtg																																																																														
EP300	2033	MSKCC	GRCh37	22	41574749	41574749	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1260684837		P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	174	876	0	ENST00000263253.7:c.7034G>C	p.Ser2345Thr	p.S2345T	ENST00000263253	NM_001429.3	2345	aGt/aCt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258976	153258976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	154	210	0	ENST00000281708.4:c.839T>C	p.Phe280Ser	p.F280S	ENST00000281708	NM_033632.3	280	tTc/tCc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460572	149460572	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	332	664	0	ENST00000286301.3:c.65T>G	p.Val22Gly	p.V22G	ENST00000286301	NM_005211.3	22	gTg/gGg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151960179	151960179	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	203	358	0	ENST00000262189.6:c.1221T>A	p.Asp407Glu	p.D407E	ENST00000262189	NM_170606.2	407	gaT/gaA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69103971	69103971	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	302	600	0	ENST00000288368.4:c.4361A>G	p.Asp1454Gly	p.D1454G	ENST00000288368	NM_024870.2	1454	gAc/gGc																																																																														
RARA	5914	MSKCC	GRCh37	17	38512473	38512473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	123	701	1	ENST00000254066.5:c.1384C>T	p.Pro462Ser	p.P462S	ENST00000254066	NM_000964.3	462	Ccg/Tcg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249501	153249501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1316840275		P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	102	364	0	ENST00000281708.4:c.1277C>T	p.Ser426Leu	p.S426L	ENST00000281708	NM_033632.3	426	tCa/tTa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855493	45855493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913026		P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	140	781	0	ENST00000391945.4:c.2164C>T	p.Arg722Trp	p.R722W	ENST00000391945	NM_000400.3	722	Cgg/Tgg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967555	26967555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	162	309	0	ENST00000381527.3:c.698T>A	p.Ile233Lys	p.I233K	ENST00000381527	NM_001260.1	233	aTa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579386	7579400	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	TCTGGGAAGGGACAG	TCTGGGAAGGGACAG	-			P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	314	729	0	ENST00000269305.4:c.287_301del	p.Ser96_Lys101delinsTer	p.S96_K101delins*	ENST00000269305	NM_001126112.2	96	tCTGTCCCTTCCCAGAaa/taa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56402540	56402540	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	43	122	0	ENST00000348428.3:c.1582T>G	p.Leu528Val	p.L528V	ENST00000348428	NM_006785.3	528	Tta/Gta																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027087	71027094	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGGCG	GGGGGGCG	-			P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	160	479	0	ENST00000318789.4:c.1233_1240del	p.Ala412AspfsTer46	p.A412Dfs*46	ENST00000318789	NM_032682.5	411	acCGCCCCCCtg/actg																																																																														
APC	324	MSKCC	GRCh37	5	112151196	112151196	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs137854569		P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	95	271	0	ENST00000257430.4:c.839C>G	p.Ser280Ter	p.S280*	ENST00000257430	NM_000038.5	280	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112175755	112175759	+	frameshift_variant	Frame_Shift_Del	DEL	ATTAC	ATTAC	-			P-0041974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	29	231	0	ENST00000257430.4:c.4467_4471del	p.Leu1489PhefsTer23	p.L1489Ffs*23	ENST00000257430	NM_000038.5	1488	ttATTACat/ttat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	171	244	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0041980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	417	640	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
MITF	4286	MSKCC	GRCh37	3	69928358	69928358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774545277		P-0041980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	25	324	0	ENST00000352241.4:c.178C>T	p.Arg60Cys	p.R60C	ENST00000352241	NM_198159.2	60	Cgc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76944369	76944369	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs398123425		P-0041980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	214	172	0	ENST00000373344.5:c.536A>G	p.Asn179Ser	p.N179S	ENST00000373344	NM_000489.3	179	aAt/aGt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0041988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	24	580	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44879925	44879925	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs189751539		P-0041988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	26	210	0	ENST00000377967.4:c.514C>T	p.Arg172Ter	p.R172*	ENST00000377967	NM_021140.2	172	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	87	772	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0042120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	17	852	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	26	441	0	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220540	123220540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	11	379	0	ENST00000218089.9:c.3201del	p.Ser1068GlnfsTer37	p.S1068Qfs*37	ENST00000218089	NM_001042749.1	1066	cGg/cg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44733215	44733228	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGGCCCTACTGG	GAAGGCCCTACTGG	A			P-0042120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	12	366	0	ENST00000377967.4:c.207_220delinsA	p.Lys70AlafsTer10	p.K70Afs*10	ENST00000377967	NM_021140.2	69	acGAAGGCCCTACTGGgc/acAgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	256	689	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493443	56493443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	233	577	0	ENST00000267101.3:c.2851G>C	p.Asp951His	p.D951H	ENST00000267101	NM_001982.3	951	Gat/Cat																																																																														
TET1	80312	MSKCC	GRCh37	10	70432668	70432668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	149	469	0	ENST00000373644.4:c.4690C>G	p.Gln1564Glu	p.Q1564E	ENST00000373644	NM_030625.2	1564	Caa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578223	7578223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	295	894	0	ENST00000269305.4:c.626G>A	p.Arg209Lys	p.R209K	ENST00000269305	NM_001126112.2	209	aGa/aAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	38	336	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578227	7578227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	288	924	0	ENST00000269305.4:c.622G>A	p.Asp208Asn	p.D208N	ENST00000269305	NM_001126112.2	208	Gac/Aac																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627889	37627889	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	290	778	0	ENST00000447079.4:c.1804C>T	p.Gln602Ter	p.Q602*	ENST00000447079	NM_015083.1	602	Cag/Tag																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	380	897	2	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81528560	81528560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	99	278	0	ENST00000298171.2:c.239G>A	p.Arg80Lys	p.R80K	ENST00000298171	NM_000369.2	80	aGa/aAa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175869	24175869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	204	724	0	ENST00000263121.7:c.1097G>A	p.Arg366His	p.R366H	ENST00000263121	NM_003073.3	366	cGc/cAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37680952	37680952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	189	587	0	ENST00000447079.4:c.3121G>A	p.Glu1041Lys	p.E1041K	ENST00000447079	NM_015083.1	1041	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448705	49448705	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	66	694	0	ENST00000301067.7:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000301067	NM_003482.3	52	Cag/Tag																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868444	117868444	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	306	691	0	ENST00000297338.2:c.898G>C	p.Glu300Gln	p.E300Q	ENST00000297338	NM_006265.2	300	Gag/Cag																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121313	29121313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	264	853	0	ENST00000328354.6:c.362G>A	p.Cys121Tyr	p.C121Y	ENST00000328354	NM_007194.3	121	tGt/tAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342965	118342965	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	79	341	0	ENST00000534358.1:c.1091C>G	p.Ser364Ter	p.S364*	ENST00000534358	NM_005933.3	364	tCa/tGa																																																																														
MGA	23269	MSKCC	GRCh37	15	42003117	42003117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	82	742	0	ENST00000219905.7:c.2654C>G	p.Ser885Cys	p.S885C	ENST00000219905	NM_001164273.1	885	tCt/tGt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041449	42041449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	201	629	0	ENST00000219905.7:c.5644C>G	p.Gln1882Glu	p.Q1882E	ENST00000219905	NM_001164273.1	1882	Cag/Gag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43700226	43700226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	76	768	0	ENST00000382044.4:c.5661G>C	p.Gln1887His	p.Q1887H	ENST00000382044	NM_001141980.1	1887	caG/caC																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627670	37627670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	258	815	0	ENST00000447079.4:c.1585C>G	p.Leu529Val	p.L529V	ENST00000447079	NM_015083.1	529	Ctt/Gtt																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526089	66526089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	42	408	0	ENST00000358598.2:c.920C>T	p.Ser307Leu	p.S307L	ENST00000358598	NM_212471.2	307	tCa/tTa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291541	10291541	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1234060339		P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	49	596	0	ENST00000340748.4:c.138G>T	p.Leu46Phe	p.L46F	ENST00000340748		46	ttG/ttT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227600	36227600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367682204		P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	213	538	0	ENST00000222270.7:c.7169C>T	p.Ser2390Leu	p.S2390L	ENST00000222270	NM_014727.1	2390	tCg/tTg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470997	25470997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	100	926	2	ENST00000264709.3:c.764C>T	p.Ser255Phe	p.S255F	ENST00000264709	NM_175629.2	255	tCc/tTc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225378305	225378305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	155	407	0	ENST00000264414.4:c.590G>A	p.Gly197Glu	p.G197E	ENST00000264414	NM_003590.4	197	gGa/gAa																																																																														
RTEL1-TNFRSF6B	100533107	MSKCC	GRCh37	20	62321767	62321767	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	C	rs774200190		P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	93	817	0	ENST00000482936.1:c.2386G>C	p.Val796Leu	p.V796L	ENST00000482936		796	Gtc/Ctc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247353	71247353	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	75	614	0	ENST00000318789.4:c.180G>C	p.Gln60His	p.Q60H	ENST00000318789	NM_032682.5	60	caG/caC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295235	1295235	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	177	598	0				ENST00000310581	NM_198253.2																																																																																
MDC1	9656	MSKCC	GRCh37	6	30672483	30672483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	317	842	0	ENST00000376406.3:c.4477G>T	p.Ala1493Ser	p.A1493S	ENST00000376406	NM_014641.2	1493	Gcc/Tcc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652070	36652071	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	493	1086	0	ENST00000244741.5:c.193dup	p.Trp65LeufsTer24	p.W65Lfs*24	ENST00000244741	NM_000389.4	64	-/T																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652200	36652201	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	358	916	0	ENST00000244741.5:c.324dup	p.Asp109ArgfsTer20	p.D109Rfs*20	ENST00000244741	NM_000389.4	108	gaa/gAaa																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140929	37140929	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	47	573	0	ENST00000373509.5:c.765C>G	p.Phe255Leu	p.F255L	ENST00000373509	NM_002648.3	255	ttC/ttG																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140946	37140946	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1426492223		P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	33	480	1	ENST00000373509.5:c.782C>T	p.Ser261Leu	p.S261L	ENST00000373509	NM_002648.3	261	tCa/tTa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202309	138202309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	312	759	0	ENST00000237289.4:c.2226G>T	p.Arg742Ser	p.R742S	ENST00000237289	NM_001270507.1	742	agG/agT																																																																														
HGF	3082	MSKCC	GRCh37	7	81386620	81386620	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	154	362	0	ENST00000222390.5:c.368-1G>C		p.X123_splice	ENST00000222390	NM_000601.4	123																																																																															
SMO	6608	MSKCC	GRCh37	7	128851500	128851500	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	281	954	0	ENST00000249373.3:c.1825G>T	p.Glu609Ter	p.E609*	ENST00000249373	NM_005631.4	609	Gag/Tag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44919321	44919321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	157	257	0	ENST00000377967.4:c.1249C>G	p.Pro417Ala	p.P417A	ENST00000377967	NM_021140.2	417	Cct/Gct																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0042152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	334	845	1	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217333	11217333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	174	732	0	ENST00000361445.4:c.4345T>C	p.Trp1449Arg	p.W1449R	ENST00000361445	NM_004958.3	1449	Tgg/Cgg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362443	40362443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	90	730	0	ENST00000293328.3:c.1753C>A	p.Leu585Ile	p.L585I	ENST00000293328	NM_012448.3	585	Ctc/Atc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56348421	56348421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	92	397	0	ENST00000348428.3:c.229T>C	p.Cys77Arg	p.C77R	ENST00000348428	NM_006785.3	77	Tgt/Cgt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35875663	35875663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	46	480	0	ENST00000303115.3:c.850G>A	p.Glu284Lys	p.E284K	ENST00000303115	NM_002185.3	284	Gaa/Aaa																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045733	26045733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	58	345	0	ENST00000540144.1:c.95C>G	p.Ala32Gly	p.A32G	ENST00000540144	NM_003531.2	32	gCc/gGc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137320996	137320996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	132	812	1	ENST00000481739.1:c.953T>C	p.Ile318Thr	p.I318T	ENST00000481739	NM_002957.4	318	aTc/aCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0042175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	169	920	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0042175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	43	551	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	17	323	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001422	29001422	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752383804		P-0042175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	213	482	1	ENST00000282397.4:c.1310C>T	p.Ser437Leu	p.S437L	ENST00000282397	NM_002019.4	437	tCg/tTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066846	30066846	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758982696		P-0042175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	26	752	2	ENST00000331968.5:c.2285G>A	p.Arg762His	p.R762H	ENST00000331968	NM_002742.2	762	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781413	3781413	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	79	770	0	ENST00000262367.5:c.4952A>T	p.Asp1651Val	p.D1651V	ENST00000262367	NM_004380.2	1651	gAc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	149	284	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519919		P-0042273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	361	1011	0	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519942		P-0042273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	106	265	1	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519886		P-0042273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	83	299	0	ENST00000349496.5:c.97T>G	p.Ser33Ala	p.S33A	ENST00000349496	NM_001904.3	33	Tct/Gct																																																																														
EP300	2033	MSKCC	GRCh37	22	41573941	41573941	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766166888		P-0042273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	132	665	0	ENST00000263253.7:c.6226G>A	p.Ala2076Thr	p.A2076T	ENST00000263253	NM_001429.3	2076	Gcc/Acc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188174	11188174	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	108	418	0	ENST00000361445.4:c.5920T>C	p.Tyr1974His	p.Y1974H	ENST00000361445	NM_004958.3	1974	Tac/Cac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437758	49437758	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	95	503	0	ENST00000301067.7:c.5212G>T	p.Glu1738Ter	p.E1738*	ENST00000301067	NM_003482.3	1738	Gag/Tag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520333	176520333	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0042273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	144	768	0	ENST00000292408.4:c.1251+1G>A		p.X417_splice	ENST00000292408	NM_213647.1	417																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	261	570	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266490	55266490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	51	523	0	ENST00000275493.2:c.2782G>C	p.Glu928Gln	p.E928Q	ENST00000275493	NM_005228.3	928	Gag/Cag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984428	201984428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	115	593	1	ENST00000359651.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000359651		365	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877385	40877385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	87	522	0	ENST00000373198.4:c.2311G>T	p.Ala771Ser	p.A771S	ENST00000373198	NM_133170.3	771	Gct/Tct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178942531	178942531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	84	275	0	ENST00000263967.3:c.2338T>C	p.Trp780Arg	p.W780R	ENST00000263967	NM_006218.2	780	Tgg/Cgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0042317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	65	433	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508257	106508257	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766854286		P-0042317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	56	516	0	ENST00000359195.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000359195	NM_002649.2	84	gCg/gTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42052725	42052725	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0042317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	94	385	0	ENST00000219905.7:c.7396C>T	p.Arg2466Ter	p.R2466*	ENST00000219905	NM_001164273.1	2466	Cga/Tga																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793146	33793146	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1210600080		P-0042317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	44	367	1	ENST00000498907.2:c.175G>T	p.Glu59Ter	p.E59*	ENST00000498907	NM_004364.3	59	Gag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041151	47041152	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0042317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	179	750	1	ENST00000329236.7:c.1347_1348del	p.Thr450HisfsTer10	p.T450Hfs*10	ENST00000329236	NM_001204466.1	449	TAt/t																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0042341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	78	311	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56376762	56376762	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	91	372	0	ENST00000348428.3:c.802A>G	p.Thr268Ala	p.T268A	ENST00000348428	NM_006785.3	268	Aca/Gca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845523	151845524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	82	668	0	ENST00000262189.6:c.13488dup	p.Lys4497Ter	p.K4497*	ENST00000262189	NM_170606.2	4496	-/T																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981156	201981156	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	265	860	0	ENST00000359651.3:c.235C>T	p.Gln79Ter	p.Q79*	ENST00000359651		79	Caa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	103	460	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	433	672	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913338		P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	242	390	0	ENST00000288602.6:c.1781A>C	p.Asp594Ala	p.D594A	ENST00000288602	NM_004333.4	594	gAt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	143	275	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138135	2138135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201206500		P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	430	702	0	ENST00000219476.3:c.5155G>A	p.Ala1719Thr	p.A1719T	ENST00000219476	NM_000548.3	1719	Gca/Aca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770576	40770576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	273	504	2	ENST00000373198.4:c.2806C>T	p.Arg936Ter	p.R936*	ENST00000373198	NM_133170.3	936	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491376	18491376	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	58	303	0	ENST00000266497.5:c.1289T>A	p.Ile430Asn	p.I430N	ENST00000266497		430	aTt/aAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0042391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	39	492	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0042391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	31	506	0	ENST00000256078.4:c.180_181delinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691943	30691943	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	31	356	0	ENST00000359013.4:c.520T>G	p.Phe174Val	p.F174V	ENST00000359013	NM_001024847.2	174	Ttc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0042482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	35	848	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714543	52714543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	49	700	0	ENST00000322088.6:c.301G>A	p.Glu101Lys	p.E101K	ENST00000322088	NM_014225.5	101	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0042511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	544	775	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032554	47032554	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	274	857	0	ENST00000329236.7:c.229G>C	p.Val77Leu	p.V77L	ENST00000329236	NM_001204466.1	77	Gtg/Ctg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	133	386	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0042551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	187	734	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0042551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	65	365	6	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44870260	44870260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			9	68	426	0	ENST00000377967.4:c.439C>T	p.Gln147Ter	p.Q147*	ENST00000377967	NM_021140.2	147	Cag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916223	9916223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	59	710	0	ENST00000330684.3:c.2066G>T	p.Ser689Ile	p.S689I	ENST00000330684	NM_001134407.1	689	aGc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	145	669	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042595-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			254	29	339	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933700	39933709	+	frameshift_variant	Frame_Shift_Del	DEL	TCAACAGGAT	TCAACAGGAT	-			P-0042595-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			237	20	320	0	ENST00000378444.4:c.890_899del	p.Asn297IlefsTer78	p.N297Ifs*78	ENST00000378444	NM_001123385.1	297	aATCCTGTTGAt/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	206	682	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	63	386	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	75	337	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	52	308	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	158	621	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
ATR	545	MSKCC	GRCh37	3	142261554	142261555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1043355995		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	72	317	0	ENST00000350721.4:c.3402dup	p.Asn1135Ter	p.N1135*	ENST00000350721	NM_001184.3	1134	-/T																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	170	556	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	222	1000	7	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	190	766	9	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741760	145741760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759352592		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	209	825	0	ENST00000428558.2:c.743G>A	p.Arg248His	p.R248H	ENST00000428558	NM_004260.3	248	cGt/cAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349641	89349641	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1064796815		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	224	841	6	ENST00000301030.4:c.3309del	p.Asp1104MetfsTer214	p.D1104Mfs*214	ENST00000301030	NM_001256183.1	1103	aaA/aa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	269	474	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	174	582	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
BARD1	580	MSKCC	GRCh37	2	215593651	215593651	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111367604		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	73	367	0	ENST00000260947.4:c.2083G>A	p.Val695Ile	p.V695I	ENST00000260947	NM_000465.2	695	Gtc/Atc																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	121	548	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15378244	15378244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	109	458	1	ENST00000263377.2:c.542G>A	p.Arg181His	p.R181H	ENST00000263377	NM_058243.2	181	cGt/cAt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52712520	52712520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	64	511	0	ENST00000394830.3:c.232C>T	p.Arg78Ter	p.R78*	ENST00000394830	NM_018313.4	78	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	192	714	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98247991	98247991	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138034434		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	122	427	2	ENST00000331920.6:c.560G>A	p.Arg187His	p.R187H	ENST00000331920	NM_000264.3	187	cGt/cAt																																																																														
B2M	567	MSKCC	GRCh37	15	45003767	45003767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	135	541	0	ENST00000558401.1:c.23C>A	p.Ala8Asp	p.A8D	ENST00000558401	NM_004048.2	8	gCt/gAt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678541	88678541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145157285		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	120	500	1	ENST00000360948.2:c.995C>T	p.Thr332Met	p.T332M	ENST00000360948	NM_001012338.2	332	aCg/aTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356423	66356423	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	75	315	1	ENST00000273854.3:c.1074del	p.Ser359LeufsTer63	p.S359Lfs*63	ENST00000273854	NM_004439.5	358	ccC/cc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211461	46211461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	10	203	0	ENST00000334344.6:c.427C>T	p.Arg143Cys	p.R143C	ENST00000334344	NM_152641.2	143	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	81	426	0	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001091	150001091	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753995655		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	71	450	1	ENST00000253339.5:c.2513G>A	p.Arg838His	p.R838H	ENST00000253339		838	cGt/cAt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948796	17948796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201972084		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	231	847	1	ENST00000458235.1:c.1646G>A	p.Arg549Gln	p.R549Q	ENST00000458235	NM_000215.3	549	cGa/cAa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	133	646	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351595	89351595	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	213	873	2	ENST00000301030.4:c.1355del	p.Asn452IlefsTer3	p.N452Ifs*3	ENST00000301030	NM_001256183.1	452	aAt/at																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390732	139390732	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	296	991	0	ENST00000277541.6:c.7459C>T	p.Gln2487Ter	p.Q2487*	ENST00000277541	NM_017617.3	2487	Cag/Tag																																																																														
PAX5	5079	MSKCC	GRCh37	9	36840564	36840564	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771002648		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	252	971	2	ENST00000358127.4:c.1169G>A	p.Arg390His	p.R390H	ENST00000358127	NM_001280556.1	390	cGt/cAt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32165309	32165309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	287	992	0	ENST00000375023.3:c.4819G>T	p.Gly1607Trp	p.G1607W	ENST00000375023	NM_004557.3	1607	Ggg/Tgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610306	10610306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	312	998	0	ENST00000171111.5:c.404G>A	p.Arg135His	p.R135H	ENST00000171111	NM_203500.1	135	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224111	36224111	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	204	676	0	ENST00000222270.7:c.6666del	p.Thr2223ProfsTer38	p.T2223Pfs*38	ENST00000222270	NM_014727.1	2221	Ccc/cc																																																																														
ETV6	2120	MSKCC	GRCh37	12	11905505	11905505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774396176		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	68	304	2	ENST00000396373.4:c.155C>T	p.Ala52Val	p.A52V	ENST00000396373	NM_001987.4	52	gCg/gTg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732985	30732985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	119	464	0	ENST00000359013.4:c.1673G>A	p.Cys558Tyr	p.C558Y	ENST00000359013	NM_001024847.2	558	tGt/tAt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508860	106508860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1251220989		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	160	617	3	ENST00000359195.3:c.854C>T	p.Thr285Met	p.T285M	ENST00000359195	NM_002649.2	285	aCg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874709	151874709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139770288		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	135	457	1	ENST00000262189.6:c.7829G>A	p.Arg2610Gln	p.R2610Q	ENST00000262189	NM_170606.2	2610	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882000		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	275	853	0	ENST00000269305.4:c.475G>A	p.Ala159Thr	p.A159T	ENST00000269305	NM_001126112.2	159	Gcc/Acc																																																																														
CDH1	999	MSKCC	GRCh37	16	68855967	68855967	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	34	597	1	ENST00000261769.5:c.1779del	p.Ile594TyrfsTer19	p.I594Yfs*19	ENST00000261769	NM_004360.3	592	gCc/gc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250136	110250136	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	142	560	0	ENST00000374672.4:c.539del	p.Pro180LeufsTer14	p.P180Lfs*14	ENST00000374672	NM_004235.4	180	cCt/ct																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883773	37883774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs766671083		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	65	887	0	ENST00000269571.5:c.3391dup	p.Leu1131ProfsTer8	p.L1131Pfs*8	ENST00000269571		1129	gcc/gCcc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79968139	79968142	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-	rs763478027		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	102	633	0	ENST00000265081.6:c.873_876del	p.Val292MetfsTer15	p.V292Mfs*15	ENST00000265081	NM_002439.4	290	cTGTTt/ct																																																																														
APC	324	MSKCC	GRCh37	5	112173848	112173849	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	87	393	0	ENST00000257430.4:c.2563_2564del	p.Glu855ThrfsTer56	p.E855Tfs*56	ENST00000257430	NM_000038.5	853	GAg/g																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633486	3633486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181782315		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	229	941	0	ENST00000294008.3:c.4765C>T	p.Arg1589Cys	p.R1589C	ENST00000294008	NM_032444.2	1589	Cgc/Tgc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412248	63412248	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	209	515	1	ENST00000330258.3:c.919del	p.Asp307ThrfsTer3	p.D307Tfs*3	ENST00000330258	NM_152424.3	307	Gac/ac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244038	5244038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771439798		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	251	794	0	ENST00000357368.4:c.1444G>A	p.Asp482Asn	p.D482N	ENST00000357368	NM_002850.3	482	Gac/Aac																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17387420	17387420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757371052		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	253	843	0	ENST00000359435.4:c.686C>T	p.Thr229Met	p.T229M	ENST00000359435	NM_001033549.1	229	aCg/aTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123778	11123778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060502056		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	179	609	1	ENST00000344626.4:c.2428G>A	p.Val810Met	p.V810M	ENST00000344626	NM_003072.3	810	Gtg/Atg																																																																														
MPL	4352	MSKCC	GRCh37	1	43812270	43812270	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	169	634	0	ENST00000372470.3:c.1135C>A	p.Leu379Met	p.L379M	ENST00000372470	NM_005373.2	379	Ctg/Atg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681435	88681435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	161	679	0	ENST00000372037.3:c.1325G>A	p.Arg442His	p.R442H	ENST00000372037	NM_004329.2	442	cGt/cAt																																																																														
PAK1	5058	MSKCC	GRCh37	11	77066749	77066749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	99	412	0	ENST00000356341.3:c.736C>T	p.Pro246Ser	p.P246S	ENST00000356341	NM_002576.4	246	Cct/Tct																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008202	29008202	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	70	354	0	ENST00000282397.4:c.669T>A	p.His223Gln	p.H223Q	ENST00000282397	NM_002019.4	223	caT/caA																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30396549	30396549	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	143	499	0	ENST00000331968.5:c.170T>C	p.Leu57Pro	p.L57P	ENST00000331968	NM_002742.2	57	cTg/cCg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	341226	341226	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1290523788		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	269	943	0	ENST00000262320.3:c.2258T>C	p.Val753Ala	p.V753A	ENST00000262320	NM_003502.3	753	gTa/gCa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223188	2223188	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373051088		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	221	737	1	ENST00000326181.6:c.800C>T	p.Thr267Met	p.T267M	ENST00000326181	NM_032271.2	267	aCg/aTg																																																																														
SRC	6714	MSKCC	GRCh37	20	36026160	36026160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	207	937	1	ENST00000358208.4:c.762G>T	p.Gln254His	p.Q254H	ENST00000358208		254	caG/caT																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940765	49940765	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs540212347		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	179	688	0	ENST00000296474.3:c.278C>T	p.Thr93Met	p.T93M	ENST00000296474	NM_002447.2	93	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627780	187627780	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767098741		P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	163	592	0	ENST00000441802.2:c.3202G>A	p.Glu1068Lys	p.E1068K	ENST00000441802	NM_005245.3	1068	Gag/Aag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956595	93956595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	73	362	0	ENST00000369303.4:c.2641C>T	p.Pro881Ser	p.P881S	ENST00000369303	NM_004440.3	881	Cca/Tca																																																																														
SMO	6608	MSKCC	GRCh37	7	128843323	128843323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	256	890	0	ENST00000249373.3:c.430C>T	p.Arg144Cys	p.R144C	ENST00000249373	NM_005631.4	144	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0042647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	286	906	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	239	739	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983017	149983017	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs757876116		P-0042647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	52	542	0	ENST00000253339.5:c.3241C>T	p.Arg1081Ter	p.R1081*	ENST00000253339		1081	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0042662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	68	567	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0042666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	578	558	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0042666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	171	613	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974795	21974795	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	57	187	0	ENST00000304494.5:c.32del	p.Pro11LeufsTer15	p.P11Lfs*15	ENST00000304494	NM_000077.4	11	cCt/ct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974795	21974795	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	57	187	0	ENST00000304494.5:c.32del	p.Pro11LeufsTer15	p.P11Lfs*15	ENST00000304494	NM_000077.4	11	cCt/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	15	417	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515241	106515241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143259740		P-0042680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	33	328	0	ENST00000359195.3:c.2384C>T	p.Ala795Val	p.A795V	ENST00000359195	NM_002649.2	795	gCg/gTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55984913	55984913	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	149	489	0	ENST00000263923.4:c.216A>T	p.Gln72His	p.Q72H	ENST00000263923	NM_002253.2	72	caA/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0042714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	23	748	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914592	32914592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1799954		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	111	387	0	ENST00000380152.3:c.6100C>T	p.Arg2034Cys	p.R2034C	ENST00000380152		2034	Cgt/Tgt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	116	387	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	90	268	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	153	499	1	ENST00000263388.2:c.125del	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460354	149460354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1437040009		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	142	415	1	ENST00000286301.3:c.283G>A	p.Ala95Thr	p.A95T	ENST00000286301	NM_005211.3	95	Gcc/Acc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	353	490	0	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	212	375	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	149	456	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	145	407	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761345552		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	169	597	1	ENST00000575354.2:c.3347dup	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	152	435	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886039551		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	109	256	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178635	32178635	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs761063325		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	62	606	2	ENST00000375023.3:c.2759del	p.Pro920LeufsTer12	p.P920Lfs*12	ENST00000375023	NM_004557.3	920	cCt/ct																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166010	118166010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767827215		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	110	411	0	ENST00000369448.3:c.520C>T	p.Arg174Trp	p.R174W	ENST00000369448	NM_017709.3	174	Cgg/Tgg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044408	128044408	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373790042		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	155	541	1	ENST00000285398.2:c.1213G>A	p.Val405Ile	p.V405I	ENST00000285398	NM_000122.1	405	Gtt/Att																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149439282	149439282	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766586864		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	128	415	0	ENST00000286301.3:c.2113G>A	p.Glu705Lys	p.E705K	ENST00000286301	NM_005211.3	705	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460538	8460538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772029273		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	129	374	1	ENST00000356435.5:c.3748G>A	p.Val1250Met	p.V1250M	ENST00000356435		1250	Gtg/Atg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	157	546	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	144	338	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
ATM	472	MSKCC	GRCh37	11	108201089	108201089	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779865		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	105	317	0	ENST00000278616.4:c.7456C>T	p.Arg2486Ter	p.R2486*	ENST00000278616	NM_000051.3	2486	Cga/Tga																																																																														
AGO2	27161	MSKCC	GRCh37	8	141561492	141561492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	148	465	0	ENST00000220592.5:c.1313G>A	p.Arg438Gln	p.R438Q	ENST00000220592	NM_012154.3	438	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223175	36223175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	179	575	1	ENST00000222270.7:c.5730del	p.Arg1911AspfsTer23	p.R1911Dfs*23	ENST00000222270	NM_014727.1	1909	Ccc/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49441816	49441816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	171	484	3	ENST00000301067.7:c.4168del	p.Ala1390GlnfsTer27	p.A1390Qfs*27	ENST00000301067	NM_003482.3	1390	Gca/ca																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911587	114911587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	169	437	0	ENST00000543371.1:c.1105G>A	p.Val369Ile	p.V369I	ENST00000543371	NM_001198531.1	369	Gta/Ata																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	159	520	4	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467921	50467921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	132	415	0	ENST00000331340.3:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000331340	NM_006060.4	386	Cgc/Tgc																																																																														
KDR	3791	MSKCC	GRCh37	4	55976689	55976689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747477930		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	121	405	0	ENST00000263923.4:c.1136C>T	p.Ala379Val	p.A379V	ENST00000263923	NM_002253.2	379	gCg/gTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483963	212483963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	100	318	0	ENST00000342788.4:c.2240C>A	p.Pro747His	p.P747H	ENST00000342788	NM_005235.2	747	cCt/cAt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797401	45797401	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35352891		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	163	540	0	ENST00000372115.3:c.1076C>T	p.Ala359Val	p.A359V	ENST00000372115	NM_001048171.1	359	gCc/gTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458578	120458578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148759277		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	161	440	0	ENST00000256646.2:c.6767G>A	p.Arg2256His	p.R2256H	ENST00000256646	NM_024408.3	2256	cGc/cAc																																																																														
FANCC	2176	MSKCC	GRCh37	9	97912356	97912356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs769039987		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	114	285	0	ENST00000289081.3:c.535C>T	p.Arg179Ter	p.R179*	ENST00000289081	NM_000136.2	179	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223431	36223431	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs546000224		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	241	637	0	ENST00000222270.7:c.5981C>T	p.Ala1994Val	p.A1994V	ENST00000222270	NM_014727.1	1994	gCg/gTg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9778817	9778817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	162	516	0	ENST00000377346.4:c.1086G>T	p.Glu362Asp	p.E362D	ENST00000377346	NM_005026.3	362	gaG/gaT																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180582	94180582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	47	359	0	ENST00000323929.3:c.1586T>C	p.Leu529Pro	p.L529P	ENST00000323929	NM_005591.3	529	cTc/cCc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022550	12022550	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs752454285		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	153	510	0	ENST00000396373.4:c.656A>G	p.Gln219Arg	p.Q219R	ENST00000396373	NM_001987.4	219	cAg/cGg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434812	99434812	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	120	459	0	ENST00000268035.6:c.899A>C	p.Asp300Ala	p.D300A	ENST00000268035	NM_000875.3	300	gAc/gCc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	339524	339524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	189	573	0	ENST00000262320.3:c.2378C>A	p.Pro793His	p.P793H	ENST00000262320	NM_003502.3	793	cCc/cAc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56871563	56871563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1269746871		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	139	384	0	ENST00000308159.5:c.1943C>T	p.Pro648Leu	p.P648L	ENST00000308159	NM_014669.4	648	cCt/cTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829079	72829079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	136	526	0	ENST00000268489.5:c.7502C>A	p.Pro2501His	p.P2501H	ENST00000268489	NM_006885.3	2501	cCt/cAt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805344	89805344	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	143	428	1	ENST00000389301.3:c.4206del	p.Leu1403CysfsTer4	p.L1403Cfs*4	ENST00000389301	NM_000135.2	1402	ttT/tt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877377	89877377	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs577625130		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	168	436	1	ENST00000389301.3:c.386C>T	p.Ala129Val	p.A129V	ENST00000389301	NM_000135.2	129	gCg/gTg																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752347	55752347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1485302383		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	164	507	0	ENST00000284073.2:c.805C>T	p.Arg269Trp	p.R269W	ENST00000284073	NM_138962.2	269	Cgg/Tgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2214544	2214544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	192	539	0	ENST00000398665.3:c.1872G>T	p.Gln624His	p.Q624H	ENST00000398665	NM_032482.2	624	caG/caT																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46588037	46588037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780349023		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	156	484	1	ENST00000263734.3:c.587C>T	p.Thr196Met	p.T196M	ENST00000263734	NM_001430.4	196	aCg/aTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161945	47161945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	107	249	0	ENST00000409792.3:c.4181A>G	p.Glu1394Gly	p.E1394G	ENST00000409792	NM_014159.6	1394	gAa/gGa																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186505038	186505039	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	78	251	0	ENST00000323963.5:c.896_897del	p.Thr299SerfsTer7	p.T299Sfs*7	ENST00000323963		298	ttCAca/ttca																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99812387	99812387	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	87	317	0	ENST00000280892.6:c.281+1G>A		p.X94_splice	ENST00000280892	NM_001130678.1	94																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540268	187540268	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760291675		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	122	331	0	ENST00000441802.2:c.7472C>T	p.Ala2491Val	p.A2491V	ENST00000441802	NM_005245.3	2491	gCt/gTt																																																																														
SDHA	6389	MSKCC	GRCh37	5	236639	236639	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770028533		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	124	395	0	ENST00000264932.6:c.1357G>A	p.Gly453Arg	p.G453R	ENST00000264932	NM_004168.2	453	Ggg/Agg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589652	67589652	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1383740979		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	57	114	0	ENST00000274335.5:c.1415G>A	p.Arg472His	p.R472H	ENST00000274335		472	cGc/cAc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517800	176517800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199792541		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	142	496	0	ENST00000292408.4:c.410C>T	p.Ser137Leu	p.S137L	ENST00000292408	NM_213647.1	137	tCg/tTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180041155	180041155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	176	583	0	ENST00000261937.6:c.3244G>A	p.Ala1082Thr	p.A1082T	ENST00000261937	NM_182925.4	1082	Gcc/Acc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324660	31324660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	185	419	0	ENST00000412585.2:c.148G>T	p.Gly50Cys	p.G50C	ENST00000412585	NM_005514.6	50	Ggc/Tgc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800486	32800486	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773325619		P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	221	602	3	ENST00000374899.4:c.1061G>A	p.Arg354His	p.R354H	ENST00000374899	NM_018833.2	354	cGc/cAc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818233	32818234	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	207	523	0	ENST00000354258.4:c.1291_1292del	p.Leu431ValfsTer20	p.L431Vfs*20	ENST00000354258	NM_000593.5	431	CTg/g																																																																														
AGO2	27161	MSKCC	GRCh37	8	141557613	141557613	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	61	577	0	ENST00000220592.5:c.1702A>G	p.Asn568Asp	p.N568D	ENST00000220592	NM_012154.3	568	Aac/Gac																																																																														
TEK	7010	MSKCC	GRCh37	9	27168522	27168522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	122	374	0	ENST00000380036.4:c.394A>G	p.Thr132Ala	p.T132A	ENST00000380036	NM_000459.3	132	Act/Gct																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777652	9777652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	253	688	0	ENST00000377346.4:c.988G>T	p.Gly330Cys	p.G330C	ENST00000377346	NM_005026.3	330	Ggc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416542	49416542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	112	566	0	ENST00000301067.7:c.16169G>A	p.Arg5390Gln	p.R5390Q	ENST00000301067	NM_003482.3	5390	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427974	49427974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	173	668	1	ENST00000301067.7:c.10616G>A	p.Arg3539Gln	p.R3539Q	ENST00000301067	NM_003482.3	3539	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431154	49431154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	75	616	0	ENST00000301067.7:c.9985C>G	p.Leu3329Val	p.L3329V	ENST00000301067	NM_003482.3	3329	Ctg/Gtg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120676	115120676	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	120	735	0	ENST00000257566.3:c.330A>C	p.Lys110Asn	p.K110N	ENST00000257566	NM_016569.3	110	aaA/aaC																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562919	21562919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770192145		P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	213	631	1	ENST00000382592.4:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000382592	NM_014572.2	334	Cgc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039339	49039339	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	127	554	0	ENST00000267163.4:c.2326-2A>G		p.X776_splice	ENST00000267163	NM_000321.2	776																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9984856	9984856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	99	531	1	ENST00000330684.3:c.1109G>A	p.Arg370Gln	p.R370Q	ENST00000330684	NM_001134407.1	370	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993864	72993864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	81	501	1	ENST00000268489.5:c.181C>A	p.Leu61Ile	p.L61I	ENST00000268489	NM_006885.3	61	Ctc/Atc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438223	56438223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	81	660	0	ENST00000407977.2:c.770G>A	p.Gly257Asp	p.G257D	ENST00000407977		257	gGt/gAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448328	56448328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199909371		P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	130	750	2	ENST00000407977.2:c.319G>A	p.Val107Ile	p.V107I	ENST00000407977		107	Gtc/Atc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63530076	63530076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	39	630	1	ENST00000307078.5:c.2359A>G	p.Thr787Ala	p.T787A	ENST00000307078	NM_004655.3	787	Acc/Gcc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5240290	5240290	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	130	737	0	ENST00000357368.4:c.1624A>G	p.Thr542Ala	p.T542A	ENST00000357368	NM_002850.3	542	Acg/Gcg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243944	5243944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	83	526	0	ENST00000357368.4:c.1538C>T	p.Ser513Leu	p.S513L	ENST00000357368	NM_002850.3	513	tCg/tTg																																																																														
ALK	238	MSKCC	GRCh37	2	29446385	29446385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs72852032		P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	265	755	1	ENST00000389048.3:c.3182G>A	p.Arg1061Gln	p.R1061Q	ENST00000389048	NM_004304.4	1061	cGg/cAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027496	48027496	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	157	421	0	ENST00000234420.5:c.2374C>G	p.Leu792Val	p.L792V	ENST00000234420	NM_000179.2	792	Cta/Gta																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	152	452	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99163069	99163069	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs775824571		P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	69	450	0	ENST00000074304.5:c.1075A>G	p.Thr359Ala	p.T359A	ENST00000074304	NM_001134224.1	359	Acc/Gcc																																																																														
INHA	3623	MSKCC	GRCh37	2	220439722	220439722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	96	726	0	ENST00000243786.2:c.575C>A	p.Pro192His	p.P192H	ENST00000243786	NM_002191.3	192	cCc/cAc																																																																														
MITF	4286	MSKCC	GRCh37	3	70008519	70008519	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	78	411	0	ENST00000352241.4:c.1109A>C	p.Asn370Thr	p.N370T	ENST00000352241	NM_198159.2	370	aAc/aCc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911587	134911587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	92	485	0	ENST00000398015.3:c.2052G>T	p.Glu684Asp	p.E684D	ENST00000398015	NM_004441.4	684	gaG/gaT																																																																														
ATR	545	MSKCC	GRCh37	3	142231113	142231113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	150	358	0	ENST00000350721.4:c.4841T>C	p.Val1614Ala	p.V1614A	ENST00000350721	NM_001184.3	1614	gTa/gCa																																																																														
BCL6	604	MSKCC	GRCh37	3	187442853	187442853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766041104		P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	69	411	0	ENST00000232014.4:c.1853G>A	p.Arg618His	p.R618H	ENST00000232014	NM_001130845.1	618	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	51	283	0	ENST00000281708.4:c.1429G>T	p.Gly477Cys	p.G477C	ENST00000281708	NM_033632.3	477	Ggt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517762	187517762	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	18	286	0	ENST00000441802.2:c.12932del	p.Pro4311HisfsTer38	p.P4311Hfs*38	ENST00000441802	NM_005245.3	4311	cCa/ca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950501	38950501	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	89	455	0	ENST00000357387.3:c.3449T>C	p.Ile1150Thr	p.I1150T	ENST00000357387	NM_152756.3	1150	aTa/aCa																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43746254	43746254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	194	551	0	ENST00000523873.1:c.373C>T	p.His125Tyr	p.H125Y	ENST00000523873		125	Cac/Tac																																																																														
ETV1	2115	MSKCC	GRCh37	7	13949304	13949304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	54	327	0	ENST00000405192.2:c.824C>A	p.Pro275His	p.P275H	ENST00000405192	NM_001163147.1	275	cCc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877031	151877031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	74	470	1	ENST00000262189.6:c.7330A>G	p.Arg2444Gly	p.R2444G	ENST00000262189	NM_170606.2	2444	Agg/Ggg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141559308	141559308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	198	688	2	ENST00000220592.5:c.1493C>T	p.Ala498Val	p.A498V	ENST00000220592	NM_012154.3	498	gCg/gTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030529	47030529	+	intron_variant	Intron	SNP	T	T	C			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	124	700	1	ENST00000329236.7:c.201+1632T>C		p.*67*	ENST00000329236	NM_001204466.1																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53228014	53228014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	237	700	1	ENST00000375401.3:c.2300C>T	p.Ala767Val	p.A767V	ENST00000375401	NM_004187.3	767	gCt/gTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76938326	76938326	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	185	605	0	ENST00000373344.5:c.2422C>T	p.Arg808Ter	p.R808*	ENST00000373344	NM_000489.3	808	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	152	493	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0042765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	154	393	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0042765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	167	428	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112173926	112173926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060503287		P-0042765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	174	417	0	ENST00000257430.4:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000257430	NM_000038.5	879	Cag/Tag																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900291	101900291	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	181	445	0	ENST00000374994.4:c.725G>A	p.Trp242Ter	p.W242*	ENST00000374994	NM_004612.2	242	tGg/tAg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589209	67589223	+	inframe_deletion	In_Frame_Del	DEL	TTCTGTGGTTGAATT	TTCTGTGGTTGAATT	-			P-0042765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	143	404	0	ENST00000274335.5:c.1197_1211del	p.Ser399_Leu404delinsArg	p.S399_L404delinsR	ENST00000274335		399	agTTCTGTGGTTGAATTa/aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0042784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	271	619	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0042805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	432	907	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28908179	28908179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	109	572	0	ENST00000282397.4:c.2576C>T	p.Ala859Val	p.A859V	ENST00000282397	NM_002019.4	859	gCt/gTt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967932	93967932	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	20	595	0	ENST00000369303.4:c.1995A>T	p.Lys665Asn	p.K665N	ENST00000369303	NM_004440.3	665	aaA/aaT																																																																														
MED12	9968	MSKCC	GRCh37	X	70342636	70342636	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	188	785	0	ENST00000374080.3:c.1397A>G	p.His466Arg	p.H466R	ENST00000374080		466	cAt/cGt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0042861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	51	343	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0042861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	199	850	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460401	149460401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	79	920	0	ENST00000286301.3:c.236C>T	p.Thr79Met	p.T79M	ENST00000286301	NM_005211.3	79	aCg/aTg																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158417	26158417	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs368384735		P-0042861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	79	1202	0	ENST00000289316.2:c.20C>G	p.Ser7Cys	p.S7C	ENST00000289316	NM_138720.2	7	tCt/tGt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224174	36224174	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368273689		P-0042861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	100	854	1	ENST00000222270.7:c.6724G>A	p.Val2242Met	p.V2242M	ENST00000222270	NM_014727.1	2242	Gtg/Atg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422176	81422176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758059665		P-0042861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	96	597	1	ENST00000298171.2:c.152C>T	p.Pro51Leu	p.P51L	ENST00000298171	NM_000369.2	51	cCg/cTg																																																																														
CD276	80381	MSKCC	GRCh37	15	73994649	73994649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs541095307		P-0042861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	56	1338	1	ENST00000318443.5:c.133G>A	p.Asp45Asn	p.D45N	ENST00000318443	NM_001024736.1	45	Gat/Aat																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256611	19256611	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	144	650	0	ENST00000162023.5:c.1102C>G	p.Arg368Gly	p.R368G	ENST00000162023		368	Cgg/Ggg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211132	36211132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	284	1335	1	ENST00000222270.7:c.883C>A	p.Arg295Ser	p.R295S	ENST00000222270	NM_014727.1	295	Cgc/Agc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	33	503	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0042869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	37	1001	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001366	29001366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779189056		P-0042869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	23	544	0	ENST00000282397.4:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000282397	NM_002019.4	456	Gca/Aca																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913485		P-0042869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	105	1232	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820648	3820648	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	67	1092	0	ENST00000262367.5:c.2803C>T	p.Gln935Ter	p.Q935*	ENST00000262367	NM_004380.2	935	Cag/Tag																																																																														
BCL6	604	MSKCC	GRCh37	3	187446967	187446967	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763470720		P-0042869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	46	1003	4	ENST00000232014.4:c.1226C>T	p.Thr409Met	p.T409M	ENST00000232014	NM_001130845.1	409	aCg/aTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48878133	48878133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	15	143	0	ENST00000267163.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000267163	NM_000321.2	29	Cct/Tct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950004	44950004	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	10	347	0	ENST00000377967.4:c.3774del	p.Trp1258Ter	p.W1258*	ENST00000377967	NM_021140.2	1258	tGg/tg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224542	123224542	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0042869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	20	402	0	ENST00000218089.9:c.3395T>G	p.Leu1132Ter	p.L1132*	ENST00000218089	NM_001042749.1	1132	tTa/tGa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	122	585	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	106	450	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	93	283	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	114	407	0	ENST00000409792.3:c.6190_6191del	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																														
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	101	377	2	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	175	695	3	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	54	282	1	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989482	212989482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	54	285	0	ENST00000342788.4:c.229C>A	p.Leu77Met	p.L77M	ENST00000342788	NM_005235.2	77	Ctg/Atg																																																																														
ATRX	546	MSKCC	GRCh37	X	76890150	76890150	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	83	373	0	ENST00000373344.5:c.4744del	p.Thr1582GlnfsTer24	p.T1582Qfs*24	ENST00000373344	NM_000489.3	1582	Aca/ca																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136949	64136949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749917386		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	109	528	0	ENST00000334205.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000334205	NM_003942.2	487	cGg/cAg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129338	152129338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1361952517		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	105	522	1	ENST00000206249.3:c.296del	p.Pro99HisfsTer10	p.P99Hfs*10	ENST00000206249	NM_000125.3	97	ttC/tt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	100	471	10	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs771001164		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	75	379	0	ENST00000307078.5:c.1214_1215del	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	33	140	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	360055	360055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	137	576	0	ENST00000262320.3:c.1034del	p.Pro345HisfsTer69	p.P345Hfs*69	ENST00000262320	NM_003502.3	345	cCa/ca																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226253377	226253377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	48	203	0	ENST00000366813.1:c.149G>A	p.Arg50His	p.R50H	ENST00000366813		50	cGt/cAt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044511	47044511	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	95	617	0	ENST00000329236.7:c.1778del	p.Asn593IlefsTer33	p.N593Ifs*33	ENST00000329236	NM_001204466.1	592	Aaa/aa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs767319284		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	120	655	2	ENST00000337652.1:c.1561dup	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	53	235	2	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781321	3781321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200112956		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	186	806	0	ENST00000262367.5:c.5044C>T	p.Arg1682Cys	p.R1682C	ENST00000262367	NM_004380.2	1682	Cgc/Tgc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	87	438	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
MED12	9968	MSKCC	GRCh37	X	70339722	70339722	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	102	552	2	ENST00000374080.3:c.395del	p.Lys132ArgfsTer15	p.K132Rfs*15	ENST00000374080		131	Aaa/aa																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2492097	2492097	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	132	611	2	ENST00000355716.4:c.500del	p.Pro167ArgfsTer23	p.P167Rfs*23	ENST00000355716	NM_003820.2	165	tgC/tg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240163	41240163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	28	77	0	ENST00000379561.5:c.187G>A	p.Ala63Thr	p.A63T	ENST00000379561	NM_002015.3	63	Gct/Act																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	113	494	0	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	96	563	0	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929495	81929495	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769180169		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	110	420	0	ENST00000359376.3:c.1156G>A	p.Val386Met	p.V386M	ENST00000359376	NM_002661.3	386	Gtg/Atg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs768101780		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	148	605	2	ENST00000543371.1:c.1485del	p.Ser496ProfsTer5	p.S496Pfs*5	ENST00000543371	NM_001198531.1	494	Ccc/cc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347191	89347191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	106	565	0	ENST00000301030.4:c.5759C>T	p.Thr1920Met	p.T1920M	ENST00000301030	NM_001256183.1	1920	aCg/aTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918125	50918127	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs763850764		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	142	710	0	ENST00000440232.2:c.2446_2448del	p.Ser816del	p.S816del	ENST00000440232	NM_002691.3	814	ttCTCc/ttc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356254	66356254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	73	466	0	ENST00000273854.3:c.1243C>A	p.Leu415Ile	p.L415I	ENST00000273854	NM_004439.5	415	Ctt/Att																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	297	654	0	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																														
HGF	3082	MSKCC	GRCh37	7	81374338	81374338	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202185530		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	78	284	0	ENST00000222390.5:c.724C>T	p.Arg242Trp	p.R242W	ENST00000222390	NM_000601.4	242	Cgg/Tgg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741646	145741646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757320755		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	132	637	0	ENST00000428558.2:c.857C>T	p.Ser286Leu	p.S286L	ENST00000428558	NM_004260.3	286	tCg/tTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563285	21563285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1207863433		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	146	710	3	ENST00000382592.4:c.634G>A	p.Val212Met	p.V212M	ENST00000382592	NM_014572.2	212	Gtg/Atg																																																																														
KIT	3815	MSKCC	GRCh37	4	55597498	55597498	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769701248		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	50	299	0	ENST00000288135.5:c.2146G>A	p.Asp716Asn	p.D716N	ENST00000288135	NM_000222.2	716	Gat/Aat																																																																														
JUN	3725	MSKCC	GRCh37	1	59248139	59248139	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	27	113	0	ENST00000371222.2:c.604del	p.Gln202SerfsTer24	p.Q202Sfs*24	ENST00000371222	NM_002228.3	202	Cag/ag																																																																														
CDC73	79577	MSKCC	GRCh37	1	193218901	193218901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	44	203	0	ENST00000367435.3:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000367435	NM_024529.4	487	Cca/Tca																																																																														
PARP1	142	MSKCC	GRCh37	1	226579958	226579958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	96	471	0	ENST00000366794.5:c.344C>T	p.Ala115Val	p.A115V	ENST00000366794	NM_001618.3	115	gCa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415936	49415936	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	35	366	0	ENST00000301067.7:c.16413-2A>G		p.X5471_splice	ENST00000301067	NM_003482.3	5471																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56493620	56493621	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-	rs766102716		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	60	324	0	ENST00000267101.3:c.2944_2945del		p.X982_splice	ENST00000267101	NM_001982.3	982																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41240345	41240345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	36	313	1	ENST00000379561.5:c.5C>T	p.Ala2Val	p.A2V	ENST00000379561	NM_002015.3	2	gCc/gTc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724871	43724872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	78	339	0	ENST00000382044.4:c.3195dup	p.Asn1066GlufsTer20	p.N1066Efs*20	ENST00000382044	NM_001141980.1	1065	-/G																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43769865	43769865	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	79	367	0	ENST00000382044.4:c.881T>G	p.Leu294Arg	p.L294R	ENST00000382044	NM_001141980.1	294	cTg/cGg																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348954	11348954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	121	486	0	ENST00000332029.2:c.382G>A	p.Val128Met	p.V128M	ENST00000332029	NM_003745.1	128	Gtg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829466	72829466	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1337139331		P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	120	505	0	ENST00000268489.5:c.7115T>C	p.Met2372Thr	p.M2372T	ENST00000268489	NM_006885.3	2372	aTg/aCg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350510	89350510	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	170	607	0	ENST00000301030.4:c.2440T>C	p.Phe814Leu	p.F814L	ENST00000301030	NM_001256183.1	814	Ttt/Ctt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533648	63533649	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	106	628	0	ENST00000307078.5:c.1505dup	p.Lys503GlnfsTer125	p.K503Qfs*125	ENST00000307078	NM_004655.3	502	ggc/ggGc																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309511	30309511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	315	584	0	ENST00000307677.4:c.511G>A	p.Ala171Thr	p.A171T	ENST00000307677	NM_138578.1	171	Gcc/Acc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391023	89391024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	88	438	0	ENST00000336596.2:c.1095dup	p.Cys366MetfsTer9	p.C366Mfs*9	ENST00000336596	NM_005233.5	363	-/A																																																																														
TERT	7015	MSKCC	GRCh37	5	1272361	1272361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	143	758	0	ENST00000310581.5:c.2321G>A	p.Arg774Gln	p.R774Q	ENST00000310581	NM_198253.2	774	cGa/cAa																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790754	89790754	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	141	722	0	ENST00000336032.3:c.145del	p.Arg49GlyfsTer13	p.R49Gfs*13	ENST00000336032	NM_006813.2	47	gaC/ga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663641	117663641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	41	339	1	ENST00000368508.3:c.4591G>T	p.Ala1531Ser	p.A1531S	ENST00000368508	NM_002944.2	1531	Gct/Tct																																																																														
MET	4233	MSKCC	GRCh37	7	116339939	116339939	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	71	289	0	ENST00000397752.3:c.801A>C	p.Glu267Asp	p.E267D	ENST00000397752	NM_000245.2	267	gaA/gaC																																																																														
MED12	9968	MSKCC	GRCh37	X	70343060	70343060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	86	431	0	ENST00000374080.3:c.1601C>T	p.Ala534Val	p.A534V	ENST00000374080		534	gCg/gTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70344618	70344618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	88	441	0	ENST00000374080.3:c.1979C>T	p.Pro660Leu	p.P660L	ENST00000374080		660	cCa/cTa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2108827	2108834	+	frameshift_variant	Frame_Shift_Del	DEL	TATTCTCT	TATTCTCT	C			P-0042880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	96	645	0	ENST00000219476.3:c.928_935delinsC	p.Tyr310ProfsTer51	p.Y310Pfs*51	ENST00000219476	NM_000548.3	310	TATTCTCTc/Cc																																																																														
RB1	5925	MSKCC	GRCh37	13	48923140	48923140	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	21	340	1	ENST00000267163.4:c.588del	p.Thr197HisfsTer4	p.T197Hfs*4	ENST00000267163	NM_000321.2	196	atC/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	275	470	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0042982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	283	836	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741894	17741894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	33	135	0	ENST00000250003.3:c.565G>A	p.Gly189Ser	p.G189S	ENST00000250003	NM_002478.4	189	Ggc/Agc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29068968	29068968	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	27	263	0	ENST00000282397.4:c.13T>G	p.Trp5Gly	p.W5G	ENST00000282397	NM_002019.4	5	Tgg/Ggg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	59	463	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460516	149460516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	70	788	0	ENST00000286301.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000286301	NM_005211.3	41	Cga/Tga																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	47	392	2	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	49	550	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028632	12028632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753665559		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	32	447	1	ENST00000353533.5:c.835G>A	p.Ala279Thr	p.A279T	ENST00000353533	NM_003010.3	279	Gca/Aca																																																																														
ATM	472	MSKCC	GRCh37	11	108160488	108160488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs730881369		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	30	561	0	ENST00000278616.4:c.4396C>T	p.Arg1466Ter	p.R1466*	ENST00000278616	NM_000051.3	1466	Cga/Tga																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371662	55371662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	54	632	0	ENST00000297316.4:c.352G>A	p.Val118Met	p.V118M	ENST00000297316	NM_022454.3	118	Gtg/Atg																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790819	89790819	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1370	80	687	5	ENST00000336032.3:c.211del	p.Gln71SerfsTer112	p.Q71Sfs*112	ENST00000336032	NM_006813.2	69	aCc/ac																																																																														
AURKA	6790	MSKCC	GRCh37	20	54945659	54945659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753238269		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	21	244	1	ENST00000312783.6:c.911G>A	p.Arg304Gln	p.R304Q	ENST00000312783	NM_198436.1	304	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	70	774	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1396	97	881	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021815	71021815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	30	264	0	ENST00000318789.4:c.1543C>T	p.His515Tyr	p.H515Y	ENST00000318789	NM_032682.5	515	Cat/Tat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969369	44969369	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1318649487		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	25	264	0	ENST00000377967.4:c.4051C>T	p.Arg1351Ter	p.R1351*	ENST00000377967	NM_021140.2	1351	Cga/Tga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121912	2121912	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201769220		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	86	768	0	ENST00000219476.3:c.2074G>A	p.Val692Ile	p.V692I	ENST00000219476	NM_000548.3	692	Gtc/Atc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55269020	55269020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182857647		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	63	753	0	ENST00000275493.2:c.3086C>T	p.Thr1029Met	p.T1029M	ENST00000275493	NM_005228.3	1029	aCg/aTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258894	16258894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	130	737	2	ENST00000375759.3:c.6164del	p.Pro2055LeufsTer9	p.P2055Lfs*9	ENST00000375759	NM_015001.2	2053	aaC/aa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112388	115112388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs565848855		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	46	435	0	ENST00000257566.3:c.1352C>T	p.Ala451Val	p.A451V	ENST00000257566	NM_016569.3	451	gCg/gTg																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480543	50480543	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147034181		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	62	520	0	ENST00000394963.4:c.413G>A	p.Arg138His	p.R138H	ENST00000394963	NM_003076.4	138	cGt/cAt																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149375074	149375074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1646	106	847	0	ENST00000360632.3:c.20C>G	p.Pro7Arg	p.P7R	ENST00000360632	NM_015472.4	7	cCc/cGc																																																																														
RB1	5925	MSKCC	GRCh37	13	48939062	48939062	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	13	275	0	ENST00000267163.4:c.897del	p.Phe299LeufsTer2	p.F299Lfs*2	ENST00000267163	NM_000321.2	298	ccT/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940513	71940513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	113	646	0	ENST00000298229.2:c.664G>A	p.Val222Met	p.V222M	ENST00000298229	NM_001567.3	222	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427092	49427093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	43	614	0	ENST00000301067.7:c.11395dup	p.Gln3799ProfsTer213	p.Q3799Pfs*213	ENST00000301067	NM_003482.3	3799	cag/cCag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500650	99500651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	43	506	0	ENST00000268035.6:c.4087dup	p.Gln1363ProfsTer11	p.Q1363Pfs*11	ENST00000268035	NM_000875.3	1361	-/C																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108253	8108253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1281	68	738	0	ENST00000585124.1:c.971A>G	p.His324Arg	p.H324R	ENST00000585124	NM_004217.3	324	cAc/cGc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1627401	1627401	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs771302868		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	66	736	0	ENST00000344749.5:c.323A>G	p.Tyr108Cys	p.Y108C	ENST00000344749	NM_001136139.2	108	tAt/tGt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855589	45855589	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751956427		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	71	750	2	ENST00000391945.4:c.2068C>T	p.Arg690Trp	p.R690W	ENST00000391945	NM_000400.3	690	Cgg/Tgg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965358	25965358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs572342520		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	67	699	0	ENST00000435504.4:c.3848G>A	p.Arg1283His	p.R1283H	ENST00000435504		1283	cGt/cAt																																																																														
ALK	238	MSKCC	GRCh37	2	29416185	29416185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	77	609	0	ENST00000389048.3:c.4768G>T	p.Gly1590Cys	p.G1590C	ENST00000389048	NM_004304.4	1590	Ggc/Tgc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639566	47639566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	18	391	0	ENST00000233146.2:c.659G>C	p.Gly220Ala	p.G220A	ENST00000233146	NM_000251.2	220	gGa/gCa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190660673	190660673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	19	343	0	ENST00000441310.2:c.311C>T	p.Ala104Val	p.A104V	ENST00000441310	NM_000534.4	104	gCt/gTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530120	212530120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	40	405	0	ENST00000342788.4:c.1799C>T	p.Ala600Val	p.A600V	ENST00000342788	NM_005235.2	600	gCa/gTa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484608	57484608	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137854538		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	51	585	1	ENST00000371085.3:c.692G>A	p.Arg231His	p.R231H	ENST00000371085	NM_000516.4	231	cGc/cAc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021823	71021823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	24	249	0	ENST00000318789.4:c.1535C>G	p.Ala512Gly	p.A512G	ENST00000318789	NM_032682.5	512	gCa/gGa																																																																														
IRF4	3662	MSKCC	GRCh37	6	401712	401712	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	48	688	0	ENST00000380956.4:c.1034A>G	p.Asp345Gly	p.D345G	ENST00000380956	NM_001195286.1	345	gAc/gGc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748555	43748555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772901865		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	43	482	1	ENST00000523873.1:c.509G>A	p.Arg170His	p.R170H	ENST00000523873		170	cGc/cAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099187	157099189	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	58	414	0	ENST00000346085.5:c.129_131del	p.Ala47del	p.A47del	ENST00000346085	NM_020732.3	42	GCG/-																																																																														
LYN	4067	MSKCC	GRCh37	8	56860234	56860234	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760301322		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	50	577	0	ENST00000519728.1:c.236C>T	p.Pro79Leu	p.P79L	ENST00000519728	NM_002350.3	79	cCg/cTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046408	69046408	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	57	588	0	ENST00000288368.4:c.3881A>G	p.Lys1294Arg	p.K1294R	ENST00000288368	NM_024870.2	1294	aAg/aGg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760465	133760465	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758209901		P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	62	720	0	ENST00000318560.5:c.2788G>A	p.Ala930Thr	p.A930T	ENST00000318560	NM_005157.4	930	Gca/Aca																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139811029	139811029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	62	677	0	ENST00000247668.2:c.640G>A	p.Val214Ile	p.V214I	ENST00000247668	NM_021138.3	214	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786202962		P-0043001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	193	662	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0043001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	170	441	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0043001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	84	374	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627445	37627445	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	198	572	0	ENST00000447079.4:c.1360G>T	p.Glu454Ter	p.E454*	ENST00000447079	NM_015083.1	454	Gaa/Taa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56390436	56390436	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	108	376	0	ENST00000348428.3:c.1175del	p.Arg392LeufsTer11	p.R392Lfs*11	ENST00000348428	NM_006785.3	392	cGt/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	121	521	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0043019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	316	801	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0043019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	26	299	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
ATM	472	MSKCC	GRCh37	11	108175420	108175420	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204751		P-0043019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	28	263	0	ENST00000278616.4:c.5515C>T	p.Gln1839Ter	p.Q1839*	ENST00000278616	NM_000051.3	1839	Cag/Tag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475134	40475134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	96	694	0	ENST00000264657.5:c.1776G>T	p.Glu592Asp	p.E592D	ENST00000264657	NM_139276.2	592	gaG/gaT																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553685	106553686	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	86	570	0	ENST00000369096.4:c.1655dup	p.Asn552LysfsTer81	p.N552Kfs*81	ENST00000369096	NM_001198.3	550	-/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	257	770	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	63	654	1	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	162	634	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660469	67660469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	131	414	0	ENST00000264010.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000264010	NM_006565.3	457	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208010	5208010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	180	829	1	ENST00000357368.4:c.5701C>T	p.Arg1901Trp	p.R1901W	ENST00000357368	NM_002850.3	1901	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	111	421	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685272	89685272	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G	rs748031178		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	80	273	0	ENST00000371953.3:c.167T>G	p.Phe56Cys	p.F56C	ENST00000371953	NM_000314.4	56	tTt/tGt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120360	94120360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs749418654		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	108	349	0	ENST00000369303.4:c.691C>T	p.Arg231Ter	p.R231*	ENST00000369303	NM_004440.3	231	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898755	134898755	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs546798910		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	124	433	0	ENST00000398015.3:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000398015	NM_004441.4	605	Gaa/Aaa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672842	86672842	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	106	301	0	ENST00000274376.6:c.2329G>T	p.Glu777Ter	p.E777*	ENST00000274376	NM_002890.2	777	Gaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	123	623	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709529	176709529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777258117		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	131	399	0	ENST00000439151.2:c.5956C>T	p.Arg1986Cys	p.R1986C	ENST00000439151	NM_022455.4	1986	Cgc/Tgc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851456	63851456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201542647		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	193	598	0	ENST00000279873.7:c.2234C>T	p.Ala745Val	p.A745V	ENST00000279873	NM_032199.2	745	gCg/gTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692978	89692978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	133	673	0	ENST00000371953.3:c.462C>A	p.Phe154Leu	p.F154L	ENST00000371953	NM_000314.4	154	ttC/ttA																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519009	66519009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	44	631	0	ENST00000358598.2:c.290G>A	p.Arg97Gln	p.R97Q	ENST00000358598	NM_212471.2	97	cGa/cAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967186	134967186	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200311306		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	156	582	1	ENST00000398015.3:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000398015	NM_004441.4	842	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692931	89692931	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	276	745	0	ENST00000371953.3:c.415T>G	p.Leu139Val	p.L139V	ENST00000371953	NM_000314.4	139	Tta/Gta																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230680	46230680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1325578765		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	29	474	0	ENST00000334344.6:c.929G>A	p.Arg310His	p.R310H	ENST00000334344	NM_152641.2	310	cGt/cAt																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80343451	80343451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	128	405	2	ENST00000286548.4:c.868G>A	p.Asp290Asn	p.D290N	ENST00000286548	NM_002072.3	290	Gac/Aac																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504512	103504512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs569799893		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	129	400	0	ENST00000355739.4:c.133C>T	p.Arg45Cys	p.R45C	ENST00000355739	NM_000123.3	45	Cgc/Tgc																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248592	8248592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	204	936	1	ENST00000335790.3:c.295G>A	p.Glu99Lys	p.E99K	ENST00000335790	NM_002315.2	99	Gag/Aag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571498	95571498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	53	514	0	ENST00000343455.3:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000343455	NM_177438.2	1060	cGc/cAc																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992217	11992217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	147	466	0	ENST00000396373.4:c.307C>T	p.Arg103Cys	p.R103C	ENST00000396373	NM_001987.4	103	Cgc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255400	16255400	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	125	656	0	ENST00000375759.3:c.2665A>C	p.Lys889Gln	p.K889Q	ENST00000375759	NM_015001.2	889	Aag/Cag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332883	65332883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764523308		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	80	261	0	ENST00000342505.4:c.656G>A	p.Arg219Gln	p.R219Q	ENST00000342505	NM_002227.2	219	cGa/cAa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058631	72058631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	139	490	0	ENST00000357731.5:c.809G>T	p.Gly270Val	p.G270V	ENST00000357731	NM_173808.2	270	gGa/gTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332889	70332889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	245	781	0	ENST00000373644.4:c.794A>G	p.Asn265Ser	p.N265S	ENST00000373644	NM_030625.2	265	aAc/aGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653812	89653812	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	144	512	0	ENST00000371953.3:c.110T>G	p.Phe37Cys	p.F37C	ENST00000371953	NM_000314.4	37	tTt/tGt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94169050	94169050	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	92	347	0	ENST00000323929.3:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000323929	NM_005591.3	648	Gaa/Taa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28980032	28980032	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	123	361	0	ENST00000282397.4:c.1437-1G>A		p.X479_splice	ENST00000282397	NM_002019.4	479																																																																															
MGA	23269	MSKCC	GRCh37	15	42028859	42028859	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	184	670	0	ENST00000219905.7:c.4397A>C	p.Lys1466Thr	p.K1466T	ENST00000219905	NM_001164273.1	1466	aAa/aCa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858430	9858430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	64	633	0	ENST00000330684.3:c.2971T>C	p.Ser991Pro	p.S991P	ENST00000330684	NM_001134407.1	991	Tcc/Ccc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50811830	50811830	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	187	517	0	ENST00000398568.2:c.1107A>C	p.Lys369Asn	p.K369N	ENST00000398568	NM_001042412.1	369	aaA/aaC																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017721	31017721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	161	646	1	ENST00000375687.4:c.583G>A	p.Ala195Thr	p.A195T	ENST00000375687	NM_015338.5	195	Gcc/Acc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024251	31024251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	167	688	1	ENST00000375687.4:c.3736G>A	p.Val1246Ile	p.V1246I	ENST00000375687	NM_015338.5	1246	Gtc/Atc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39721205	39721205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	52	564	0	ENST00000361337.2:c.708G>T	p.Glu236Asp	p.E236D	ENST00000361337	NM_003286.2	236	gaG/gaT																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114163	73114163	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780289621		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	183	551	0	ENST00000356692.5:c.799G>A	p.Glu267Lys	p.E267K	ENST00000356692		267	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952075	178952075	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	122	441	0	ENST00000263967.3:c.3130A>T	p.Asn1044Tyr	p.N1044Y	ENST00000263967	NM_006218.2	1044	Aat/Tat																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748186	41748186	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	187	713	0	ENST00000226382.2:c.583A>G	p.Thr195Ala	p.T195A	ENST00000226382	NM_003924.3	195	Act/Gct																																																																														
KIT	3815	MSKCC	GRCh37	4	55561932	55561932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	91	297	0	ENST00000288135.5:c.322T>C	p.Tyr108His	p.Y108H	ENST00000288135	NM_000222.2	108	Tat/Cat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38949931	38949931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	85	408	0	ENST00000357387.3:c.4019G>T	p.Arg1340Ile	p.R1340I	ENST00000357387	NM_152756.3	1340	aGa/aTa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670128	86670128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	131	427	0	ENST00000274376.6:c.1925T>C	p.Phe642Ser	p.F642S	ENST00000274376	NM_002890.2	642	tTt/tCt																																																																														
APC	324	MSKCC	GRCh37	5	112175754	112175754	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	102	380	0	ENST00000257430.4:c.4463T>G	p.Leu1488Ter	p.L1488*	ENST00000257430	NM_000038.5	1488	tTa/tGa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662436	117662436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	44	608	0	ENST00000368508.3:c.4941G>T	p.Glu1647Asp	p.E1647D	ENST00000368508	NM_002944.2	1647	gaG/gaT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976776	2976776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	215	1011	0	ENST00000396946.4:c.1236G>T	p.Glu412Asp	p.E412D	ENST00000396946	NM_032415.4	412	gaG/gaT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486335	8486335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141603921		P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	19	354	0	ENST00000356435.5:c.2482C>T	p.Arg828Trp	p.R828W	ENST00000356435		828	Cgg/Tgg																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15838431	15838431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	180	497	1	ENST00000307771.7:c.929C>T	p.Ala310Val	p.A310V	ENST00000307771	NM_005089.3	310	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0043081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	199	676	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934285	49934285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	70	786	0	ENST00000296474.3:c.2222G>A	p.Gly741Glu	p.G741E	ENST00000296474	NM_002447.2	741	gGg/gAg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872243	45872243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773453200		P-0043081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	60	853	0	ENST00000391945.4:c.191C>T	p.Pro64Leu	p.P64L	ENST00000391945	NM_000400.3	64	cCg/cTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868267	37868267	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761376658		P-0043081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	256	681	0	ENST00000269571.5:c.988C>T	p.Arg330Trp	p.R330W	ENST00000269571		330	Cgg/Tgg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243887	41243887	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs80357310		P-0043081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	46	630	0	ENST00000357654.3:c.3661G>C	p.Glu1221Gln	p.E1221Q	ENST00000357654	NM_007294.3	1221	Gaa/Caa																																																																														
PAX5	5079	MSKCC	GRCh37	9	36846928	36847038	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGTGTATGGTGGGTGGAGAGAGAAACAGGAACCAAACGTCAAATCCAGTTCAGAAAAGGCCCTGGGTCCCAGCCAGCCTGGTTGCCAATGGCATTTGCCTCTTCCGTGAGT	TGTGTATGGTGGGTGGAGAGAGAAACAGGAACCAAACGTCAAATCCAGTTCAGAAAAGGCCCTGGGTCCCAGCCAGCCTGGTTGCCAATGGCATTTGCCTCTTCCGTGAGT	-			P-0043081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	34	537	0	ENST00000358127.4:c.1013-112_1013-2del		p.X338_splice	ENST00000358127	NM_001280556.1	338																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604835	48604835	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0043128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	34	286	0	ENST00000342988.3:c.1657T>A	p.Ter553ArgextTer40	p.*553Rext*40	ENST00000342988	NM_005359.5	553	Tga/Aga																																																																														
TET1	80312	MSKCC	GRCh37	10	70332844	70332844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	82	668	0	ENST00000373644.4:c.749C>T	p.Ala250Val	p.A250V	ENST00000373644	NM_030625.2	250	gCt/gTt																																																																														
ERG	2078	MSKCC	GRCh37	21	39763599	39763599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	37	340	0	ENST00000288319.7:c.853G>A	p.Asp285Asn	p.D285N	ENST00000288319	NM_182918.3	285	Gac/Aac																																																																														
TP63	8626	MSKCC	GRCh37	3	189608577	189608577	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0043128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	72	500	0	ENST00000264731.3:c.1653-1G>T		p.X551_splice	ENST00000264731	NM_003722.4	551																																																																															
KDR	3791	MSKCC	GRCh37	4	55948148	55948148	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	65	454	0	ENST00000263923.4:c.3823A>G	p.Arg1275Gly	p.R1275G	ENST00000263923	NM_002253.2	1275	Aga/Gga																																																																														
YAP1	10413	MSKCC	GRCh37	11	101985017	101985017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	83	531	0	ENST00000282441.5:c.464C>A	p.Pro155His	p.P155H	ENST00000282441	NM_001130145.2	155	cCc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830844	3830845	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0043135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	228	497	0	ENST00000262367.5:c.1710_1711dup	p.Ile571ThrfsTer19	p.I571Tfs*19	ENST00000262367	NM_004380.2	571	att/aCAtt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166740	32166740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	197	807	0	ENST00000375023.3:c.4498C>T	p.Arg1500Cys	p.R1500C	ENST00000375023	NM_004557.3	1500	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	28	467	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MED12	9968	MSKCC	GRCh37	X	70338701	70338701	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs769202858		P-0043162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	35	636	0	ENST00000374080.3:c.97G>A	p.Glu33Lys	p.E33K	ENST00000374080		33	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	37	787	0	ENST00000267101.3:c.273G>T	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atT																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482864	67482864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	54	523	0	ENST00000327367.4:c.1268G>A	p.Ser423Asn	p.S423N	ENST00000327367	NM_005902.3	423	aGt/aAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435170	56435171	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	71	890	0	ENST00000407977.2:c.1966dup	p.Arg656LysfsTer91	p.R656Kfs*91	ENST00000407977		656	agg/aAgg																																																																														
VHL	7428	MSKCC	GRCh37	3	10183797	10183797	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	125	705	0	ENST00000256474.2:c.266T>G	p.Leu89Arg	p.L89R	ENST00000256474	NM_000551.3	89	cTc/cGc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609707	28609718	+	inframe_deletion	In_Frame_Del	DEL	TTATGGCTTCAC	TTATGGCTTCAC	-			P-0043202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	146	687	0	ENST00000241453.7:c.1511_1522del	p.Ser504_Ile507del	p.S504_I507del	ENST00000241453	NM_004119.2	504	aGTGAAGCCATAAaa/aaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125859	47125859	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	49	256	1	ENST00000409792.3:c.5411T>G	p.Leu1804Trp	p.L1804W	ENST00000409792	NM_014159.6	1804	tTg/tGg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651508	52651508	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	115	566	0	ENST00000394830.3:c.1588del	p.Val530PhefsTer39	p.V530Ffs*39	ENST00000394830	NM_018313.4	530	Gtt/tt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89176359	89176359	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0043202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	47	320	0	ENST00000336596.2:c.89T>A	p.Val30Asp	p.V30D	ENST00000336596	NM_005233.5	30	gTc/gAc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924562	131924562	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1254198489		P-0043202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	93	445	0	ENST00000265335.6:c.1235A>G	p.Asn412Ser	p.N412S	ENST00000265335		412	aAc/aGc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981194	201981195	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	436	873	0	ENST00000359651.3:c.275dup	p.Ser93LeufsTer4	p.S93Lfs*4	ENST00000359651		91	-/T																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832829	3832829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	282	672	0	ENST00000262367.5:c.1429G>C	p.Asp477His	p.D477H	ENST00000262367	NM_004380.2	477	Gac/Cac																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033248	69033248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143386950		P-0043332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	99	576	0	ENST00000288368.4:c.3688C>T	p.Arg1230Trp	p.R1230W	ENST00000288368	NM_024870.2	1230	Cgg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949149	44949149	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	250	306	0	ENST00000377967.4:c.3710T>G	p.Ile1237Ser	p.I1237S	ENST00000377967	NM_021140.2	1237	aTt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	168	426	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	369	687	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	255	525	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	112	324	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	85	162	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	149	437	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351359	89351359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756332789		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	376	769	0	ENST00000301030.4:c.1591G>A	p.Ala531Thr	p.A531T	ENST00000301030	NM_001256183.1	531	Gcc/Acc																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	59	498	2	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549835	187549835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	161	449	1	ENST00000441802.2:c.4406C>T	p.Thr1469Ile	p.T1469I	ENST00000441802	NM_005245.3	1469	aCa/aTa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783211	9783211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	272	541	0	ENST00000377346.4:c.2455G>A	p.Gly819Arg	p.G819R	ENST00000377346	NM_005026.3	819	Ggg/Agg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	261	681	1	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164508	47164508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201756643		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	171	410	1	ENST00000409792.3:c.1618C>T	p.Arg540Ter	p.R540*	ENST00000409792	NM_014159.6	540	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	335	683	3	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
BTK	695	MSKCC	GRCh37	X	100629549	100629549	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	196	308	0	ENST00000308731.7:c.215del	p.Asn72IlefsTer49	p.N72Ifs*49	ENST00000308731	NM_000061.2	72	aAt/at																																																																														
MTOR	2475	MSKCC	GRCh37	1	11186697	11186697	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780210598		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	227	490	0	ENST00000361445.4:c.6508C>T	p.Arg2170Trp	p.R2170W	ENST00000361445	NM_004958.3	2170	Cgg/Tgg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47643462	47643462	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750502		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	157	539	1	ENST00000233146.2:c.970C>T	p.Gln324Ter	p.Q324*	ENST00000233146	NM_000251.2	324	Cag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987388	2987388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1192456063		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	229	552	1	ENST00000396946.4:c.41C>T	p.Thr14Met	p.T14M	ENST00000396946	NM_032415.4	14	aCg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108186625	108186625	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876659454		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	31	411	0	ENST00000278616.4:c.6082C>T	p.Gln2028Ter	p.Q2028*	ENST00000278616	NM_000051.3	2028	Caa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133245405	133245405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	297	671	1	ENST00000320574.5:c.1915C>T	p.Arg639Cys	p.R639C	ENST00000320574	NM_006231.2	639	Cgc/Tgc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753384	42753385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	377	694	0	ENST00000222329.4:c.879dup	p.Pro294AlafsTer15	p.P294Afs*15	ENST00000222329	NM_006494.2	293	-/G																																																																														
CIC	23152	MSKCC	GRCh37	19	42798163	42798163	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	295	643	0	ENST00000575354.2:c.4117del	p.Ser1373ProfsTer42	p.S1373Pfs*42	ENST00000575354	NM_015125.3	1373	Tcc/cc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530072	212530072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	294	311	0	ENST00000342788.4:c.1847C>A	p.Pro616Gln	p.P616Q	ENST00000342788	NM_005235.2	616	cCa/cAa																																																																														
NF2	4771	MSKCC	GRCh37	22	30051644	30051644	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	184	310	0	ENST00000338641.4:c.578del	p.Ala193GlufsTer16	p.A193Efs*16	ENST00000338641	NM_000268.3	193	gCa/ga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643863	52643863	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1187519621		P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	121	480	0	ENST00000394830.3:c.2033G>A	p.Arg678His	p.R678H	ENST00000394830	NM_018313.4	678	cGc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884563	151884563	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	189	381	0	ENST00000262189.6:c.4794-2A>G		p.X1598_splice	ENST00000262189	NM_170606.2	1598																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98239040	98239040	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0043336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	157	352	1	ENST00000331920.6:c.1602+1G>A		p.X534_splice	ENST00000331920	NM_000264.3	534																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0043339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	631	678	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	740	474	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	16	567	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	233	293	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0043348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	53	300	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0043348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	29	493	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189526287	189526287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	291	504	2	ENST00000264731.3:c.551C>T	p.Ser184Leu	p.S184L	ENST00000264731	NM_003722.4	184	tCg/tTg																																																																														
RB1	5925	MSKCC	GRCh37	13	49039340	49039340	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0043348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	342	566	0	ENST00000267163.4:c.2326-1del		p.X776_splice	ENST00000267163	NM_000321.2	776																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72991999	72991999	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	39	618	1	ENST00000268489.5:c.2046C>A	p.Tyr682Ter	p.Y682*	ENST00000268489	NM_006885.3	682	taC/taA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859911	151859911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	37	478	0	ENST00000262189.6:c.10751G>A	p.Gly3584Glu	p.G3584E	ENST00000262189	NM_170606.2	3584	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860404	151860404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	54	629	0	ENST00000262189.6:c.10258G>A	p.Asp3420Asn	p.D3420N	ENST00000262189	NM_170606.2	3420	Gat/Aat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	11	446	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0043369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	167	548	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0043369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	137	530	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0043369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	214	754	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091809	29091809	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs202089930		P-0043369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	119	503	0	ENST00000328354.6:c.1148C>A	p.Thr383Asn	p.T383N	ENST00000328354	NM_007194.3	383	aCc/aAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48955527	48955544	+	inframe_deletion	In_Frame_Del	DEL	AACATTTAGAACGATGTG	AACATTTAGAACGATGTG	-			P-0043369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	51	358	0	ENST00000267163.4:c.1648_1665del	p.Leu550_His555del	p.L550_H555del	ENST00000267163	NM_000321.2	548	aAACATTTAGAACGATGTGaa/aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624258	89624258	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	116	248	0	ENST00000371953.3:c.32del	p.Arg11LysfsTer13	p.R11Kfs*13	ENST00000371953	NM_000314.4	11	aGa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717696	89717696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	85	442	0	ENST00000371953.3:c.723del	p.Phe241LeufsTer15	p.F241Lfs*15	ENST00000371953	NM_000314.4	241	Ttt/tt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005170	150005170	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	149	422	0	ENST00000253339.5:c.1055del	p.Gly352AspfsTer6	p.G352Dfs*6	ENST00000253339		352	gGa/ga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121434596		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	136	382	2	ENST00000369535.4:c.38G>T	p.Gly13Val	p.G13V	ENST00000369535	NM_002524.4	13	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692901	89692901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	121	387	0	ENST00000371953.3:c.385G>T	p.Gly129Ter	p.G129*	ENST00000371953	NM_000314.4	129	Gga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	274	498	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	102	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825518	50825519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1219062549		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	69	318	0	ENST00000398568.2:c.2156dup	p.Asn719LysfsTer2	p.N719Kfs*2	ENST00000398568	NM_001042412.1	717	gaa/gAaa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63531801	63531801	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	492	584	0	ENST00000307078.5:c.2180C>A	p.Ser727Ter	p.S727*	ENST00000307078	NM_004655.3	727	tCg/tAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs80338963		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	17	363	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139754	55139754	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs201223501		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	177	533	0	ENST00000257290.5:c.1415T>G	p.Ile472Ser	p.I472S	ENST00000257290	NM_006206.4	472	aTc/aGc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876448	35876448	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	318	555	0	ENST00000303115.3:c.1240del	p.Thr414ArgfsTer13	p.T414Rfs*13	ENST00000303115	NM_002185.3	414	Acg/cg																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	104	274	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225683	26225683	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs750903931		P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	57	583	0	ENST00000360408.1:c.301T>G	p.Leu101Val	p.L101V	ENST00000360408	NM_003532.2	101	Ttg/Gtg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	451	721	2	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0043392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	11	476	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
PAX5	5079	MSKCC	GRCh37	9	36846852	36846852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	14	428	0	ENST00000358127.4:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000358127	NM_001280556.1	363	Ccg/Tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0043392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	10	591	1	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
YES1	7525	MSKCC	GRCh37	18	724551	724551	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs775603690		P-0043392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	12	286	0	ENST00000314574.4:c.1505A>G	p.His502Arg	p.H502R	ENST00000314574	NM_005433.3	502	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	74	663	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PARK2	0	MSKCC	GRCh37	6	162683677	162683677	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	59	493	0	ENST00000366898.1:c.292G>T	p.Glu98Ter	p.E98*	ENST00000366898	NM_004562.2	98	Gag/Tag																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	576	463	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	87	420	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs377767326		P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	77	228	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577529	7577529	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs730882027		P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	244	510	0	ENST00000269305.4:c.752T>G	p.Ile251Ser	p.I251S	ENST00000269305	NM_001126112.2	251	aTc/aGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	116	333	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411522	63411522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746279756		P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	574	636	2	ENST00000330258.3:c.1645C>T	p.Arg549Trp	p.R549W	ENST00000330258	NM_152424.3	549	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420011	41420011	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773011187		P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	159	381	2	ENST00000373198.4:c.310G>A	p.Asp104Asn	p.D104N	ENST00000373198	NM_133170.3	104	Gac/Aac																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021340	31021340	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	180	453	0	ENST00000375687.4:c.1342del	p.Leu448SerfsTer14	p.L448Sfs*14	ENST00000375687	NM_015338.5	447	Ccc/cc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89478284	89478284	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	56	293	0	ENST00000336596.2:c.2103C>A	p.Tyr701Ter	p.Y701*	ENST00000336596	NM_005233.5	701	taC/taA																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004885	150004885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	156	349	0	ENST00000253339.5:c.1340G>C	p.Ser447Thr	p.S447T	ENST00000253339		447	aGt/aCt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519920		P-0043560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	158	316	0	ENST00000397062.3:c.85G>A	p.Asp29Asn	p.D29N	ENST00000397062	NM_006164.4	29	Gat/Aat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11308102	11308102	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1304123826		P-0043560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	90	688	0	ENST00000361445.4:c.890A>G	p.Asp297Gly	p.D297G	ENST00000361445	NM_004958.3	297	gAc/gGc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552687	18552687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	139	684	1	ENST00000266497.5:c.2098G>A	p.Gly700Arg	p.G700R	ENST00000266497		700	Gga/Aga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212425	36212425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	183	848	1	ENST00000222270.7:c.2176G>T	p.Ala726Ser	p.A726S	ENST00000222270	NM_014727.1	726	Gct/Tct																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715762	61715762	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	66	364	0	ENST00000401558.2:c.2167T>C	p.Cys723Arg	p.C723R	ENST00000401558	NM_003400.3	723	Tgc/Cgc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146702	185146702	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	107	627	0	ENST00000265026.3:c.333C>A	p.Ser111Arg	p.S111R	ENST00000265026	NM_004721.4	111	agC/agA																																																																														
TERT	7015	MSKCC	GRCh37	5	1255431	1255431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	133	585	0	ENST00000310581.5:c.3128G>T	p.Cys1043Phe	p.C1043F	ENST00000310581	NM_198253.2	1043	tGc/tTc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871271	35871271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	77	394	0	ENST00000303115.3:c.493C>T	p.His165Tyr	p.H165Y	ENST00000303115	NM_002185.3	165	Cac/Tac																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997768	149997768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575740406		P-0043560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	120	505	0	ENST00000253339.5:c.2699G>A	p.Arg900His	p.R900H	ENST00000253339		900	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0043574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	38	417	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670750	134670750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	56	525	0	ENST00000398015.3:c.661G>T	p.Ala221Ser	p.A221S	ENST00000398015	NM_004441.4	221	Gct/Tct																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166371	118166373	+	inframe_deletion	In_Frame_Del	DEL	ACC	ACC	-			P-0043574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	16	362	0	ENST00000369448.3:c.883_885del	p.His295del	p.H295del	ENST00000369448	NM_017709.3	294	aACCac/aac																																																																														
ATM	472	MSKCC	GRCh37	11	108206612	108206612	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	150	272	0	ENST00000278616.4:c.8192T>G	p.Val2731Gly	p.V2731G	ENST00000278616	NM_000051.3	2731	gTc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0043620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	309	480	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913250		P-0043620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	271	268	0	ENST00000369535.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000369535	NM_002524.4	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	145	296	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	18	225	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	60	417	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0043661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	123	760	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217651	7217651	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	79	461	0	ENST00000380728.2:c.276del	p.Val93PhefsTer16	p.V93Ffs*16	ENST00000380728		92	aaA/aa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94219121	94219121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	56	389	0	ENST00000323929.3:c.283A>T	p.Ser95Cys	p.S95C	ENST00000323929	NM_005591.3	95	Agt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	85	238	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	125	270	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	125	270	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	125	270	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577017	7577017	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	157	480	0	ENST00000269305.4:c.919+2T>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093362	30093362	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	56	142	0	ENST00000331968.5:c.1901T>G	p.Leu634Arg	p.L634R	ENST00000331968	NM_002742.2	634	cTa/cGa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56111417	56111417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	70	206	0	ENST00000399503.3:c.17G>C	p.Gly6Ala	p.G6A	ENST00000399503	NM_005921.1	6	gGg/gCg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101909967	101909967	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	30	46	0	ENST00000374994.4:c.1287T>A	p.Tyr429Ter	p.Y429*	ENST00000374994	NM_004612.2	429	taT/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	122	629	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	62	295	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	54	201	0	ENST00000342988.3:c.1256G>T	p.Gly419Val	p.G419V	ENST00000342988	NM_005359.5	419	gGg/gTg																																																																														
PARP1	142	MSKCC	GRCh37	1	226555271	226555272	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	46	395	1	ENST00000366794.5:c.2315_2316delinsGT	p.Glu772Gly	p.E772G	ENST00000366794	NM_001618.3	772	gAG/gGT																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266025	41266222	+	inframe_deletion	In_Frame_Del	DEL	ATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCC	ATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCC	-			P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	10	228	0	ENST00000349496.5:c.22_219del	p.Met8_Ser73del	p.M8_S73del	ENST00000349496	NM_001904.3	8	ATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCC/-																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199892	138199892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	28	404	0	ENST00000237289.4:c.1310C>A	p.Ala437Asp	p.A437D	ENST00000237289	NM_001270507.1	437	gCc/gAc																																																																														
MET	4233	MSKCC	GRCh37	7	116397756	116397756	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0043712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	83	415	0	ENST00000397752.3:c.2030T>G	p.Leu677Ter	p.L677*	ENST00000397752	NM_000245.2	677	tTa/tGa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183827	10183836	+	frameshift_variant	Frame_Shift_Del	DEL	CAACGCTGCC	CAACGCTGCC	TACCTGCA			P-0043738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	93	598	1	ENST00000256474.2:c.296_305delinsTACCTGCA	p.Pro99LeufsTer32	p.P99Lfs*32	ENST00000256474	NM_000551.3	99	cCAACGCTGCCg/cTACCTGCAg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0043840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	307	656	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699351	47699351	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	259	443	0	ENST00000347630.2:c.157A>G	p.Lys53Glu	p.K53E	ENST00000347630	NM_001007230.1	53	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0043853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	212	557	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	56	227	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871807	12871807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	155	283	0	ENST00000228872.4:c.524del	p.Ser175Ter	p.S175*	ENST00000228872	NM_004064.3	175	tCa/ta																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696456	47696456	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	126	428	0	ENST00000347630.2:c.367T>G	p.Tyr123Asp	p.Y123D	ENST00000347630	NM_001007230.1	123	Tat/Gat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	325	585	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18963802	18963802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	77	326	0	ENST00000262803.5:c.979G>C	p.Asp327His	p.D327H	ENST00000262803	NM_002911.3	327	Gat/Cat																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902491	1902491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	106	591	0	ENST00000382895.3:c.110G>T	p.Ser37Ile	p.S37I	ENST00000382895	NM_133330.2	37	aGc/aTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525531	187525532	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0043914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	67	312	0	ENST00000441802.2:c.10547dup	p.Val3517GlyfsTer4	p.V3517Gfs*4	ENST00000441802	NM_005245.3	3516	aag/aaAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	73	345	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	144	622	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	128	367	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	120	475	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	46	349	3	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	118	477	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073616	8073616	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	82	388	0	ENST00000377482.5:c.1043del	p.Pro348ArgfsTer104	p.P348Rfs*104	ENST00000377482	NM_018948.3	348	cCg/cg																																																																														
PARP1	142	MSKCC	GRCh37	1	226567646	226567647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1159330096		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	102	543	0	ENST00000366794.5:c.1519dup	p.Ser507LysfsTer14	p.S507Kfs*14	ENST00000366794	NM_001618.3	507	agc/aAgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs753054998		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	121	698	5	ENST00000301030.4:c.4382_4384del	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662450	67662450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	118	552	1	ENST00000264010.4:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000264010	NM_006565.3	566	Cgt/Tgt																																																																														
JUN	3725	MSKCC	GRCh37	1	59248123	59248123	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs370122841		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	23	144	0	ENST00000371222.2:c.620C>A	p.Pro207Gln	p.P207Q	ENST00000371222	NM_002228.3	207	cCg/cAg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	143	581	0	ENST00000397062.3:c.246A>C	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaC																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	123	454	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs766222935		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	83	512	3	ENST00000357368.4:c.3072dup	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																														
PGR	5241	MSKCC	GRCh37	11	100996755	100996757	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	64	381	0	ENST00000325455.5:c.1770_1772del	p.Phe591del	p.F591del	ENST00000325455	NM_001202474.3	590	ttCTTt/ttt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs768101780		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	128	661	2	ENST00000543371.1:c.1485del	p.Ser496ProfsTer5	p.S496Pfs*5	ENST00000543371	NM_001198531.1	494	Ccc/cc																																																																														
KIT	3815	MSKCC	GRCh37	4	55603380	55603380	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	63	340	1	ENST00000288135.5:c.2740del	p.Arg914AspfsTer10	p.R914Dfs*10	ENST00000288135	NM_000222.2	912	ctA/ct																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278070	18278070	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs886041602		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	156	620	0	ENST00000222254.8:c.1690A>G	p.Lys564Glu	p.K564E	ENST00000222254	NM_005027.3	564	Aag/Gag																																																																														
INHA	3623	MSKCC	GRCh37	2	220437222	220437223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1286117855		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	91	714	0	ENST00000243786.2:c.132dup	p.Ala45ArgfsTer29	p.A45Rfs*29	ENST00000243786	NM_002191.3	42	-/C																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610601	10610601	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	162	635	0	ENST00000171111.5:c.109G>T	p.Glu37Ter	p.E37*	ENST00000171111	NM_203500.1	37	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089462	27089462	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	123	530	0	ENST00000324856.7:c.2420-2A>G		p.X807_splice	ENST00000324856	NM_006015.4	807																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717712	89717713	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GTAA			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	264	377	0	ENST00000371953.3:c.739_740insAAGT	p.Leu247Ter	p.L247*	ENST00000371953	NM_000314.4	246	ccg/ccGTAAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944205	71944205	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	113	525	0	ENST00000298229.2:c.2040+1del		p.G680fs	ENST00000298229	NM_001567.3	680	Ggg/gg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946344	71946345	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	157	633	0	ENST00000298229.2:c.2513_2514del	p.Val838GlyfsTer45	p.V838Gfs*45	ENST00000298229	NM_001567.3	836	gaGTgt/gagt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343322	118343322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	65	297	0	ENST00000534358.1:c.1448G>A	p.Ser483Asn	p.S483N	ENST00000534358	NM_005933.3	483	aGt/aAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495319	56495319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	113	507	0	ENST00000267101.3:c.3509C>A	p.Pro1170His	p.P1170H	ENST00000267101	NM_001982.3	1170	cCc/cAc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26978214	26978214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	65	359	0	ENST00000381527.3:c.1391A>G	p.Tyr464Cys	p.Y464C	ENST00000381527	NM_001260.1	464	tAc/tGc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046548	30046548	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763088813		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	125	562	1	ENST00000331968.5:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000331968	NM_002742.2	879	Cag/Tag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647656	3647657	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1344612471		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	114	734	0	ENST00000294008.3:c.1406dup	p.Leu470IlefsTer8	p.L470Ifs*8	ENST00000294008	NM_032444.2	469	cca/ccCa																																																																														
AURKB	9212	MSKCC	GRCh37	17	8113526	8113526	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs779961970		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	112	655	0	ENST00000585124.1:c.17A>G	p.Asn6Ser	p.N6S	ENST00000585124	NM_004217.3	6	aAc/aGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29553666	29553666	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	78	444	0	ENST00000358273.4:c.2215A>G	p.Met739Val	p.M739V	ENST00000358273	NM_001042492.2	739	Atg/Gtg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41247864	41247865	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T	rs80357537		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	69	362	0	ENST00000357654.3:c.668dup	p.Ala224GlyfsTer4	p.A224Gfs*4	ENST00000357654	NM_007294.3	223	aag/aaAg																																																																														
CD79B	974	MSKCC	GRCh37	17	62007448	62007448	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	99	471	0	ENST00000392795.3:c.419A>C	p.Glu140Ala	p.E140A	ENST00000392795	NM_001039933.1	140	gAg/gCg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40979284	40979284	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764919361		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	113	442	0	ENST00000373198.4:c.1849C>T	p.Arg617Trp	p.R617W	ENST00000373198	NM_133170.3	617	Cgg/Tgg																																																																														
MST1	4485	MSKCC	GRCh37	3	49724669	49724669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	65	315	0	ENST00000449682.2:c.520C>A	p.Pro174Thr	p.P174T	ENST00000449682	NM_020998.3	174	Cct/Act																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260187	149260187	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374427935		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	115	458	0	ENST00000360632.3:c.706C>T	p.Arg236Trp	p.R236W	ENST00000360632	NM_015472.4	236	Cgg/Tgg																																																																														
PARK2	0	MSKCC	GRCh37	6	162622282	162622282	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	65	286	0	ENST00000366898.1:c.415G>C	p.Gly139Arg	p.G139R	ENST00000366898	NM_004562.2	139	Ggt/Cgt																																																																														
NBN	4683	MSKCC	GRCh37	8	90993675	90993676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	41	303	0	ENST00000265433.3:c.247dup	p.Met83AsnfsTer23	p.M83Nfs*23	ENST00000265433	NM_002485.4	83	atg/aAtg																																																																														
SYK	6850	MSKCC	GRCh37	9	93650082	93650082	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	122	521	0	ENST00000375746.1:c.1633A>G	p.Asn545Asp	p.N545D	ENST00000375746	NM_001174167.1	545	Aac/Gac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393359	139393359	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs760123789		P-0043940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	144	531	0	ENST00000277541.6:c.6172A>G	p.Asn2058Asp	p.N2058D	ENST00000277541	NM_017617.3	2058	Aac/Gac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	116	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0044007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	9	242	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	492	670	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	109	331	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	109	331	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	109	331	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678559	88678559	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764882745		P-0044007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	77	363	1	ENST00000360948.2:c.977G>A	p.Arg326His	p.R326H	ENST00000360948	NM_001012338.2	326	cGt/cAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76938116	76938116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	66	512	0	ENST00000373344.5:c.2632G>A	p.Asp878Asn	p.D878N	ENST00000373344	NM_000489.3	878	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	315	290	0				ENST00000310581	NM_198253.2																																																																																
CIC	23152	MSKCC	GRCh37	19	42799254	42799254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	332	576	0	ENST00000575354.2:c.4738G>C	p.Glu1580Gln	p.E1580Q	ENST00000575354	NM_015125.3	1580	Gag/Cag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200023	123200023	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	78	95	0	ENST00000218089.9:c.2097-2A>G		p.X699_splice	ENST00000218089	NM_001042749.1	699																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438226	110438226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	10	84	0	ENST00000375856.3:c.175G>A	p.Glu59Lys	p.E59K	ENST00000375856	NM_003749.2	59	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857255	9857255	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	47	413	0	ENST00000330684.3:c.4146C>G	p.Cys1382Trp	p.C1382W	ENST00000330684	NM_001134407.1	1382	tgC/tgG																																																																														
FANCA	2175	MSKCC	GRCh37	16	89858905	89858905	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1449343629		P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	26	478	1	ENST00000389301.3:c.1057C>A	p.Pro353Thr	p.P353T	ENST00000389301	NM_000135.2	353	Cct/Act																																																																														
NF1	4763	MSKCC	GRCh37	17	29556298	29556298	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	30	384	0	ENST00000358273.4:c.2665A>G	p.Thr889Ala	p.T889A	ENST00000358273	NM_001042492.2	889	Aca/Gca																																																																														
STAT3	6774	MSKCC	GRCh37	17	40474460	40474460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	25	388	0	ENST00000264657.5:c.1941C>A	p.Asn647Lys	p.N647K	ENST00000264657	NM_139276.2	647	aaC/aaA																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873160	136873160	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	56	304	0	ENST00000241393.3:c.338A>G	p.His113Arg	p.H113R	ENST00000241393	NM_003467.2	113	cAt/cGt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747047	40747047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	43	427	1	ENST00000373198.4:c.3035G>A	p.Gly1012Asp	p.G1012D	ENST00000373198	NM_133170.3	1012	gGc/gAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55597510	55597510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	20	325	0	ENST00000288135.5:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000288135	NM_000222.2	720	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295295	1295295	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	75	330	1				ENST00000310581	NM_198253.2																																																																																
DAXX	1616	MSKCC	GRCh37	6	33287961	33287961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	41	467	0	ENST00000374542.5:c.1292C>A	p.Ser431Tyr	p.S431Y	ENST00000374542	NM_001141970.1	431	tCc/tAc																																																																														
ABL1	25	MSKCC	GRCh37	9	133755455	133755455	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	41	434	0	ENST00000318560.5:c.1424G>A	p.Cys475Tyr	p.C475Y	ENST00000318560	NM_005157.4	475	tGt/tAt																																																																														
MED12	9968	MSKCC	GRCh37	X	70344087	70344087	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	181	358	0	ENST00000374080.3:c.1823T>A	p.Val608Asp	p.V608D	ENST00000374080		608	gTt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	207	360	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913240		P-0044037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	77	566	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0044175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	271	602	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893668	28893668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs374452662		P-0044175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	39	292	0	ENST00000282397.4:c.3178C>T	p.Arg1060Ter	p.R1060*	ENST00000282397	NM_002019.4	1060	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140534444	140534444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	35	386	0	ENST00000288602.6:c.469G>A	p.Val157Ile	p.V157I	ENST00000288602	NM_004333.4	157	Gtt/Att																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372202	55372202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764648837		P-0044175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	108	302	0	ENST00000297316.4:c.892G>A	p.Gly298Ser	p.G298S	ENST00000297316	NM_022454.3	298	Ggc/Agc																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96919731	96919731	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1324266357		P-0044175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	113	504	0	ENST00000258439.3:c.532T>C	p.Tyr178His	p.Y178H	ENST00000258439	NM_001193304.2	178	Tac/Cac																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931907	68931907	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0044175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	82	381	0	ENST00000288368.4:c.336+1G>T		p.X112_splice	ENST00000288368	NM_024870.2	112																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120288	70120289	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCT			P-0044181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1402	78	1177	0	ENST00000245479.2:c.1291_1294dup	p.Tyr432PhefsTer147	p.Y432Ffs*147	ENST00000245479	NM_000346.3	430	-/TCCT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0044185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	451	775	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
NF1	4763	MSKCC	GRCh37	17	29533309	29533309	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs752789273		P-0044185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	29	289	1	ENST00000358273.4:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000358273	NM_001042492.2	438	Gaa/Taa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472633	88472633	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	21	424	0	ENST00000360948.2:c.1922A>G	p.Asp641Gly	p.D641G	ENST00000360948	NM_001012338.2	641	gAt/gGt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81934267	81934267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	66	788	0	ENST00000359376.3:c.1244G>T	p.Arg415Leu	p.R415L	ENST00000359376	NM_002661.3	415	cGt/cTt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979982	7979982	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	215	777	0	ENST00000319144.4:c.1355C>G	p.Ser452Cys	p.S452C	ENST00000319144	NM_001139.2	452	tCt/tGt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534329	63534329	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	98	817	0	ENST00000307078.5:c.1192A>C	p.Ile398Leu	p.I398L	ENST00000307078	NM_004655.3	398	Atc/Ctc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39637984	39637984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	125	633	0	ENST00000262039.4:c.2401C>A	p.Gln801Lys	p.Q801K	ENST00000262039	NM_002647.2	801	Cag/Aag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048862	180048862	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	196	1065	0	ENST00000261937.6:c.1700A>T	p.Glu567Val	p.E567V	ENST00000261937	NM_182925.4	567	gAg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0044199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	238	701	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55971151	55971151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	42	501	0	ENST00000263923.4:c.1646G>A	p.Arg549Lys	p.R549K	ENST00000263923	NM_002253.2	549	aGg/aAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046378	69046378	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375506738		P-0044199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	90	580	0	ENST00000288368.4:c.3851C>T	p.Ala1284Val	p.A1284V	ENST00000288368	NM_024870.2	1284	gCg/gTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522616	157522616	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs375949587		P-0044199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	103	575	0	ENST00000346085.5:c.4888G>C	p.Asp1630His	p.D1630H	ENST00000346085	NM_020732.3	1630	Gat/Cat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	92	393	0				ENST00000310581	NM_198253.2																																																																																
PAK7	0	MSKCC	GRCh37	20	9561124	9561124	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	73	364	0	ENST00000353224.5:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000353224	NM_177990.2	220	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	81	319	0				ENST00000310581	NM_198253.2																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31017824	31017824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576523117		P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	141	800	0	ENST00000375687.4:c.686C>T	p.Pro229Leu	p.P229L	ENST00000375687	NM_015338.5	229	cCg/cTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55946136	55946136	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771593658		P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	43	294	0	ENST00000263923.4:c.4043G>A	p.Gly1348Glu	p.G1348E	ENST00000263923	NM_002253.2	1348	gGg/gAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486104	8486104	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	101	460	0	ENST00000356435.5:c.2713G>T	p.Glu905Ter	p.E905*	ENST00000356435		905	Gag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190726	11190727	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	83	751	2	ENST00000361445.4:c.5472_5473delinsAG	p.Asn1824_Ile1825delinsLysVal	p.N1824_I1825delinsKV	ENST00000361445	NM_004958.3	1824	aaCAtc/aaAGtc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100393	8100393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	78	823	0	ENST00000346208.3:c.367C>T	p.His123Tyr	p.H123Y	ENST00000346208		123	Cac/Tac																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571982	64571982	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	93	901	0	ENST00000337652.1:c.1672T>C	p.Phe558Leu	p.F558L	ENST00000337652	NM_130803.2	558	Ttc/Ctc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18699278	18699278	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1381086997		P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	19	259	0	ENST00000266497.5:c.3379G>A	p.Glu1127Lys	p.E1127K	ENST00000266497		1127	Gag/Aag																																																																														
RECQL	5965	MSKCC	GRCh37	12	21624031	21624031	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs3207640		P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	31	213	0	ENST00000421138.2:c.1669G>A	p.Glu557Lys	p.E557K	ENST00000421138		557	Gaa/Aaa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43769934	43769934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	79	327	0	ENST00000382044.4:c.812C>T	p.Pro271Leu	p.P271L	ENST00000382044	NM_001141980.1	271	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29556430	29556430	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	104	457	0	ENST00000358273.4:c.2797del	p.Leu933TyrfsTer5	p.L933Yfs*5	ENST00000358273	NM_001042492.2	933	Cta/ta																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5239044	5239044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	156	818	0	ENST00000357368.4:c.1735T>C	p.Tyr579His	p.Y579H	ENST00000357368	NM_002850.3	579	Tac/Cac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36215939	36215939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	77	825	0	ENST00000222270.7:c.3479G>A	p.Gly1160Glu	p.G1160E	ENST00000222270	NM_014727.1	1160	gGa/gAa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158626963	158626963	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	60	411	0	ENST00000263640.3:c.707T>C	p.Ile236Thr	p.I236T	ENST00000263640	NM_001105.4	236	aTc/aCc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794135	242794135	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	72	749	0	ENST00000334409.5:c.593G>A	p.Gly198Glu	p.G198E	ENST00000334409	NM_005018.2	198	gGg/gAg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49939935	49939935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	182	863	0	ENST00000296474.3:c.1108C>T	p.Pro370Ser	p.P370S	ENST00000296474	NM_002447.2	370	Ccc/Tcc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20488474	20488474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	59	355	0	ENST00000346618.3:c.1130C>T	p.Ser377Phe	p.S377F	ENST00000346618	NM_001949.4	377	tCc/tTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157222624	157222624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	103	512	0	ENST00000346085.5:c.1891C>T	p.Pro631Ser	p.P631S	ENST00000346085	NM_020732.3	631	Ccg/Tcg																																																																														
SMO	6608	MSKCC	GRCh37	7	128850271	128850271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1018551272		P-0044212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	136	784	2	ENST00000249373.3:c.1534C>T	p.Arg512Cys	p.R512C	ENST00000249373	NM_005631.4	512	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	71	401	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460504	8460504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148300682		P-0044219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	56	579	0	ENST00000356435.5:c.3782C>T	p.Thr1261Met	p.T1261M	ENST00000356435		1261	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	120	619	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188404	32188404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763926116		P-0044219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	52	542	0	ENST00000375023.3:c.937G>A	p.Glu313Lys	p.E313K	ENST00000375023	NM_004557.3	313	Gaa/Aaa																																																																														
WT1	7490	MSKCC	GRCh37	11	32421540	32421540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760654956		P-0044219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	161	650	1	ENST00000332351.3:c.1052G>A	p.Gly351Glu	p.G351E	ENST00000332351	NM_024426.4	351	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044286-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	210	269	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs876660333		P-0044286-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	73	563	0	ENST00000269305.4:c.815T>A	p.Val272Glu	p.V272E	ENST00000269305	NM_001126112.2	272	gTg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044286-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	63	301	0	ENST00000304494.5:c.259del	p.Arg87GlyfsTer59	p.R87Gfs*59	ENST00000304494	NM_000077.4	87	Cgg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044286-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	63	301	0	ENST00000304494.5:c.259del	p.Arg87GlyfsTer59	p.R87Gfs*59	ENST00000304494	NM_000077.4	87	Cgg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044286-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	63	301	0	ENST00000304494.5:c.259del	p.Arg87GlyfsTer59	p.R87Gfs*59	ENST00000304494	NM_000077.4	87	Cgg/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0044320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	344	442	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	83	365	2				ENST00000310581	NM_198253.2																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0044320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	100	572	2	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
CDK8	1024	MSKCC	GRCh37	13	26911769	26911769	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	33	200	0	ENST00000381527.3:c.194G>C	p.Arg65Thr	p.R65T	ENST00000381527	NM_001260.1	65	aGa/aCa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4102403	4102403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1457335620		P-0044320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	362	736	0	ENST00000262948.5:c.499G>A	p.Glu167Lys	p.E167K	ENST00000262948	NM_030662.3	167	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956772	68956772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199819614		P-0044320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	208	700	1	ENST00000288368.4:c.890G>A	p.Arg297His	p.R297H	ENST00000288368	NM_024870.2	297	cGt/cAt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981382	201981563	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCCTGGAGCTCTGGGCCAGCTGCACAGCCAGAGAGAGCCCTTGAGGGAGGGATTAGGGGAGTGTGACCCTTCCTTCCTTCCTTGTCAGCTTCCAGCTCTTCTGATGAGCTCAGTTGGATCATTGAGCTGCTGGAGAAGGATGGCATGGCCTTCCAGGAGGCCCTAGACCCAGGGCCCTTT	GGCCCTGGAGCTCTGGGCCAGCTGCACAGCCAGAGAGAGCCCTTGAGGGAGGGATTAGGGGAGTGTGACCCTTCCTTCCTTCCTTGTCAGCTTCCAGCTCTTCTGATGAGCTCAGTTGGATCATTGAGCTGCTGGAGAAGGATGGCATGGCCTTCCAGGAGGCCCTAGACCCAGGGCCCTTT	-			P-0044320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	140	434	0	ENST00000359651.3:c.385+78_478+1del		p.X129_splice	ENST00000359651		129																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56490293	56490293	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	54	341	0	ENST00000267101.3:c.2062G>C	p.Glu688Gln	p.E688Q	ENST00000267101	NM_001982.3	688	Gag/Cag																																																																														
RB1	5925	MSKCC	GRCh37	13	49027219	49027219	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	42	385	0	ENST00000267163.4:c.1786C>G	p.Leu596Val	p.L596V	ENST00000267163	NM_000321.2	596	Ctc/Gtc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38545417	38545417	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0044320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	170	662	0	ENST00000299084.4:c.31G>C	p.Asp11His	p.D11H	ENST00000299084	NM_152594.2	11	Gat/Cat																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658818	3658818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	223	666	0	ENST00000294008.3:c.148G>C	p.Asp50His	p.D50H	ENST00000294008	NM_032444.2	50	Gac/Cac																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10288004	10288004	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	47	576	0	ENST00000340748.4:c.485C>G	p.Thr162Ser	p.T162S	ENST00000340748		162	aCc/aGc																																																																														
AKT2	208	MSKCC	GRCh37	19	40748569	40748569	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	58	727	0	ENST00000392038.2:c.313A>G	p.Met105Val	p.M105V	ENST00000392038	NM_001626.4	105	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0044333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	16	482	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0044362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	10	68	0	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100414	157100414	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1438676618		P-0044362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	15	36	0	ENST00000346085.5:c.1351T>C	p.Ser451Pro	p.S451P	ENST00000346085	NM_020732.3	451	Tcg/Ccg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0044376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	228	698	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12038893	12038893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	176	414	0	ENST00000396373.4:c.1186A>G	p.Arg396Gly	p.R396G	ENST00000396373	NM_001987.4	396	Aga/Gga																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300846	137300846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	272	898	2	ENST00000481739.1:c.491G>A	p.Arg164His	p.R164H	ENST00000481739	NM_002957.4	164	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440961	56440961	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	56	642	0	ENST00000407977.2:c.376G>A	p.Ala126Thr	p.A126T	ENST00000407977		126	Gct/Act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	58	338	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	245	274	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0044390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	259	429	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519747		P-0044390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	355	468	0	ENST00000269305.4:c.518T>G	p.Val173Gly	p.V173G	ENST00000269305	NM_001126112.2	173	gTg/gGg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641076	3641076	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	235	638	0	ENST00000294008.3:c.2563T>G	p.Tyr855Asp	p.Y855D	ENST00000294008	NM_032444.2	855	Tat/Gat																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262096	10262096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	179	619	0	ENST00000340748.4:c.2195C>T	p.Ser732Phe	p.S732F	ENST00000340748		732	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578468	7578468	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	524	798	0	ENST00000269305.4:c.462del	p.Thr155ProfsTer15	p.T155Pfs*15	ENST00000269305	NM_001126112.2	154	ggC/gg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447023	49447041	+	frameshift_variant	Frame_Shift_Del	DEL	CATGGGTGGTTTTAGGCAG	CATGGGTGGTTTTAGGCAG	-			P-0044397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	237	450	0	ENST00000301067.7:c.903_921del	p.Phe301LeufsTer27	p.F301Lfs*27	ENST00000301067	NM_003482.3	301	ttCTGCCTAAAACCACCCATG/tt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447036	49447036	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	146	457	0	ENST00000301067.7:c.908del	p.Leu303GlnfsTer31	p.L303Qfs*31	ENST00000301067	NM_003482.3	303	cTa/ca																																																																														
SLX4	84464	MSKCC	GRCh37	16	3656493	3656493	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148547201		P-0044397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	211	712	0	ENST00000294008.3:c.742G>A	p.Glu248Lys	p.E248K	ENST00000294008	NM_032444.2	248	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923661	72923661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	154	618	1	ENST00000268489.5:c.3417C>A	p.Phe1139Leu	p.F1139L	ENST00000268489	NM_006885.3	1139	ttC/ttA																																																																														
KDR	3791	MSKCC	GRCh37	4	55968622	55968622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	31	593	0	ENST00000263923.4:c.2041G>T	p.Gly681Trp	p.G681W	ENST00000263923	NM_002253.2	681	Ggg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	110	354	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576919	7576919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	331	555	0	ENST00000269305.4:c.927del	p.Asn310ThrfsTer35	p.N310Tfs*35	ENST00000269305	NM_001126112.2	309	ccC/cc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	110	206	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	234	409	2	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137020	64137020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1174133485		P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	335	618	1	ENST00000334205.4:c.1531C>T	p.Arg511Cys	p.R511C	ENST00000334205	NM_003942.2	511	Cgc/Tgc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279668	123279668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	96	373	0	ENST00000358487.5:c.764G>A	p.Arg255Gln	p.R255Q	ENST00000358487	NM_000141.4	255	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418445	49418445	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745599611		P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	74	633	1	ENST00000301067.7:c.15968G>A	p.Arg5323His	p.R5323H	ENST00000301067	NM_003482.3	5323	cGc/cAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377246	118377246	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	222	438	0	ENST00000534358.1:c.10639C>T	p.Gln3547Ter	p.Q3547*	ENST00000534358	NM_005933.3	3547	Cag/Tag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741528	145741531	+	frameshift_variant	Frame_Shift_Del	DEL	GGAG	GGAG	-			P-0044412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	208	916	0	ENST00000428558.2:c.972_975del	p.Ser325ValfsTer33	p.S325Vfs*33	ENST00000428558	NM_004260.3	324	ccCTCC/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	210	872	3	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	199	420	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	104	436	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920337	134920337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141607080		P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	46	577	0	ENST00000398015.3:c.2152G>A	p.Val718Met	p.V718M	ENST00000398015	NM_004441.4	718	Gtg/Atg																																																																														
ATM	472	MSKCC	GRCh37	11	108115726	108115726	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	67	223	0	ENST00000278616.4:c.875del	p.Pro292ArgfsTer28	p.P292Rfs*28	ENST00000278616	NM_000051.3	292	Ccg/cg																																																																														
RB1	5925	MSKCC	GRCh37	13	48941740	48941740	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776782		P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	65	180	0	ENST00000267163.4:c.1049+1G>A		p.X350_splice	ENST00000267163	NM_000321.2	350																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632566	3632566	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1205902549		P-0044449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	120	1013	0	ENST00000294008.3:c.5282G>A	p.Arg1761His	p.R1761H	ENST00000294008	NM_032444.2	1761	cGc/cAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0044479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	132	572	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs121913499		P-0044479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	33	210	0	ENST00000345146.2:c.394C>G	p.Arg132Gly	p.R132G	ENST00000345146	NM_005896.2	132	Cgt/Ggt																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240285	41240285	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	24	495	0	ENST00000379561.5:c.65C>G	p.Ser22Trp	p.S22W	ENST00000379561	NM_002015.3	22	tCg/tGg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620605	52620606	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	77	425	0	ENST00000394830.3:c.3147dup	p.Leu1050ThrfsTer32	p.L1050Tfs*32	ENST00000394830	NM_018313.4	1049	-/A																																																																														
RASA1	5921	MSKCC	GRCh37	5	86681164	86681164	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	45	224	0	ENST00000274376.6:c.2805A>T	p.Lys935Asn	p.K935N	ENST00000274376	NM_002890.2	935	aaA/aaT																																																																														
AR	367	MSKCC	GRCh37	X	66766373	66766373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	10	57	0	ENST00000374690.3:c.1385G>A	p.Gly462Asp	p.G462D	ENST00000374690	NM_000044.3	462	gGc/gAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	145	416	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	156	419	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	164	568	6	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	178	874	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	190	777	0	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	152	605	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	118	390	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1388678905		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	47	897	1	ENST00000434045.2:c.686del	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118885	70118885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	201	736	0	ENST00000245479.2:c.457C>T	p.Pro153Ser	p.P153S	ENST00000245479	NM_000346.3	153	Ccc/Tcc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670357	134670357	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369940994		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	133	486	0	ENST00000398015.3:c.268C>T	p.Arg90Cys	p.R90C	ENST00000398015	NM_004441.4	90	Cgc/Tgc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277254	41277254	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs797044875		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	113	373	1	ENST00000349496.5:c.1723G>A	p.Gly575Arg	p.G575R	ENST00000349496	NM_001904.3	575	Gga/Aga																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885145	111885145	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	169	709	1	ENST00000341259.2:c.1038del	p.Leu347CysfsTer26	p.L347Cfs*26	ENST00000341259	NM_005475.2	345	Ggg/gg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	131	671	1	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																														
ATRX	546	MSKCC	GRCh37	X	76920173	76920173	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	167	456	3	ENST00000373344.5:c.3904del	p.Arg1302GlufsTer44	p.R1302Efs*44	ENST00000373344	NM_000489.3	1302	Aga/ga																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	150	663	16	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103754	47103755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC	rs749901643		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	210	528	0	ENST00000409792.3:c.6190_6191dup	p.Asp2064GlufsTer84	p.D2064Efs*84	ENST00000409792	NM_014159.6	2064	gac/gaGAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047959	180047959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs933223149		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	262	951	0	ENST00000261937.6:c.2216G>A	p.Arg739His	p.R739H	ENST00000261937	NM_182925.4	739	cGc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	124	379	0	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	227	845	3	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185183609	185183609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	147	415	0	ENST00000265026.3:c.1463C>T	p.Ala488Val	p.A488V	ENST00000265026	NM_004721.4	488	gCc/gTc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058500	72058500	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1428865181		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	137	400	0	ENST00000357731.5:c.940C>T	p.Pro314Ser	p.P314S	ENST00000357731	NM_173808.2	314	Cct/Tct																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622330	1622330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377067150		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	234	939	4	ENST00000344749.5:c.634G>A	p.Ala212Thr	p.A212T	ENST00000344749	NM_001136139.2	212	Gcc/Acc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933617	39933617	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	179	661	1	ENST00000378444.4:c.982del	p.Asp328ThrfsTer50	p.D328Tfs*50	ENST00000378444	NM_001123385.1	328	Gac/ac																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119562149	119562149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149631706		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	138	445	0	ENST00000316626.5:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000316626		396	cGg/cAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	92	456	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1415689583		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	115	485	0	ENST00000398015.3:c.251G>A	p.Arg84His	p.R84H	ENST00000398015	NM_004441.4	84	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	233	992	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739894	41739894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	140	487	1	ENST00000242208.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000242208	NM_002192.2	27	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	216	826	1	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146944	38146945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	220	810	0	ENST00000317025.8:c.3197dup	p.Asn1066LysfsTer14	p.N1066Kfs*14	ENST00000317025	NM_023034.1	1066	aac/aaAc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72241924	72241924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs552625764		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	121	360	0	ENST00000357731.5:c.466G>A	p.Val156Ile	p.V156I	ENST00000357731	NM_173808.2	156	Gtc/Atc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210769	5210769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770699501		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	209	790	0	ENST00000357368.4:c.5282C>T	p.Thr1761Met	p.T1761M	ENST00000357368	NM_002850.3	1761	aCg/aTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497322	149497322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs987244289		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	206	756	1	ENST00000261799.4:c.2996G>A	p.Arg999Gln	p.R999Q	ENST00000261799	NM_002609.3	999	cGa/cAa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647400	3647400	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763869769		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	163	740	4	ENST00000294008.3:c.1663G>A	p.Val555Met	p.V555M	ENST00000294008	NM_032444.2	555	Gtg/Atg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	244	637	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																														
MED12	9968	MSKCC	GRCh37	X	70338703	70338703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	183	659	0	ENST00000374080.3:c.99G>T	p.Glu33Asp	p.E33D	ENST00000374080		33	gaG/gaT																																																																														
FANCA	2175	MSKCC	GRCh37	16	89825027	89825027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773070418		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	196	678	2	ENST00000389301.3:c.2939C>T	p.Ala980Val	p.A980V	ENST00000389301	NM_000135.2	980	gCg/gTg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746161	162746161	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	72	237	0	ENST00000367921.3:c.2283+1G>A		p.X761_splice	ENST00000367921	NM_006182.2	761																																																																															
GATA2	2624	MSKCC	GRCh37	3	128204623	128204623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	254	865	1	ENST00000341105.2:c.818del	p.Gly273AspfsTer53	p.G273Dfs*53	ENST00000341105	NM_032638.4	273	gGa/ga																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978495	70978495	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	107	457	0	ENST00000276594.2:c.1158del	p.Lys387SerfsTer90	p.K387Sfs*90	ENST00000276594	NM_024504.3	386	ggG/gg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780272	9780273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	180	752	0	ENST00000377346.4:c.1446dup	p.Val483ArgfsTer43	p.V483Rfs*43	ENST00000377346	NM_005026.3	481	cac/caCc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094386	27094388	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	147	620	0	ENST00000324856.7:c.3097_3099del	p.Glu1033del	p.E1033del	ENST00000324856	NM_006015.4	1032	GAG/-																																																																														
TET1	80312	MSKCC	GRCh37	10	70405011	70405011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	155	555	0	ENST00000373644.4:c.2525T>C	p.Ile842Thr	p.I842T	ENST00000373644	NM_030625.2	842	aTc/aCc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137183	64137183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	189	688	0	ENST00000334205.4:c.1615G>A	p.Ala539Thr	p.A539T	ENST00000334205	NM_003942.2	539	Gcc/Acc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998937	100998937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	165	667	0	ENST00000325455.5:c.865A>G	p.Met289Val	p.M289V	ENST00000325455	NM_001202474.3	289	Atg/Gtg																																																																														
CBL	867	MSKCC	GRCh37	11	119170319	119170319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	118	305	0	ENST00000264033.4:c.2549C>T	p.Ala850Val	p.A850V	ENST00000264033	NM_005188.3	850	gCt/gTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658371	18658371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	90	357	0	ENST00000266497.5:c.3176C>A	p.Ala1059Glu	p.A1059E	ENST00000266497		1059	gCa/gAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438045	49438045	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1331807800		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	262	775	1	ENST00000301067.7:c.5126G>A	p.Arg1709His	p.R1709H	ENST00000301067	NM_003482.3	1709	cGc/cAc																																																																														
AKT1	207	MSKCC	GRCh37	14	105240287	105240287	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs551254461		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	244	803	0	ENST00000349310.3:c.664C>T	p.Arg222Cys	p.R222C	ENST00000349310	NM_001014432.1	222	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827588	72827588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	201	651	0	ENST00000268489.5:c.8993G>A	p.Arg2998Gln	p.R2998Q	ENST00000268489	NM_006885.3	2998	cGg/cAg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347020	89347020	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867065526		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	35	650	0	ENST00000301030.4:c.5930C>T	p.Ser1977Leu	p.S1977L	ENST00000301030	NM_001256183.1	1977	tCg/tTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231479	5231479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1377623190		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	239	890	0	ENST00000357368.4:c.1997C>T	p.Pro666Leu	p.P666L	ENST00000357368	NM_002850.3	666	cCg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228148	36228148	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867668452		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	228	850	0	ENST00000222270.7:c.7534G>A	p.Ala2512Thr	p.A2512T	ENST00000222270	NM_014727.1	2512	Gca/Aca																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967123	25967123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	114	531	0	ENST00000435504.4:c.2083C>T	p.Pro695Ser	p.P695S	ENST00000435504		695	Cca/Tca																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222423	39222423	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	228	682	0	ENST00000402219.2:c.3187del	p.Ile1063LeufsTer25	p.I1063Lfs*25	ENST00000402219	NM_005633.3	1063	Att/tt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022395	31022395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1162384519		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	79	339	0	ENST00000375687.4:c.1880C>T	p.Ala627Val	p.A627V	ENST00000375687	NM_015338.5	627	gCg/gTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106164896	106164896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	38	516	0	ENST00000380013.4:c.3764A>G	p.Tyr1255Cys	p.Y1255C	ENST00000380013	NM_001127208.2	1255	tAc/tGc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541216	187541216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	126	387	0	ENST00000441802.2:c.6524T>C	p.Met2175Thr	p.M2175T	ENST00000441802	NM_005245.3	2175	aTg/aCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629124	187629125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	161	576	0	ENST00000441802.2:c.1857dup	p.Asn620GlnfsTer56	p.N620Qfs*56	ENST00000441802	NM_005245.3	619	-/C																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945803	38945803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	49	213	0	ENST00000357387.3:c.4423C>A	p.Leu1475Ile	p.L1475I	ENST00000357387	NM_152756.3	1475	Ctt/Att																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188970	32188970	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1227775066		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	250	951	0	ENST00000375023.3:c.584T>C	p.Val195Ala	p.V195A	ENST00000375023	NM_004557.3	195	gTc/gCc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70967546	70967547	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	142	647	0	ENST00000276594.2:c.1476_1477del	p.Tyr493LeufsTer3	p.Y493Lfs*3	ENST00000276594	NM_024504.3	492	gtGTat/gtat																																																																														
CD274	29126	MSKCC	GRCh37	9	5466786	5466787	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	49	136	0	ENST00000381577.3:c.813dup	p.Cys272MetfsTer13	p.C272Mfs*13	ENST00000381577	NM_014143.3	269	-/A																																																																														
TEK	7010	MSKCC	GRCh37	9	27212816	27212816	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199701926		P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	272	906	0	ENST00000380036.4:c.2798C>T	p.Ala933Val	p.A933V	ENST00000380036	NM_000459.3	933	gCg/gTg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37034003	37034003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	146	408	0	ENST00000358127.4:c.26C>A	p.Thr9Asn	p.T9N	ENST00000358127	NM_001280556.1	9	aCt/aAt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246350	53246350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	277	699	1	ENST00000375401.3:c.632G>A	p.Arg211Gln	p.R211Q	ENST00000375401	NM_004187.3	211	cGg/cAg																																																																														
MED12	9968	MSKCC	GRCh37	X	70345347	70345347	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0044484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	203	750	0	ENST00000374080.3:c.2371+2del		p.X791_splice	ENST00000374080		791																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	52	431	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0044487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	89	723	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89813023	89813023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142833057		P-0044487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	85	809	1	ENST00000389301.3:c.3482C>T	p.Thr1161Met	p.T1161M	ENST00000389301	NM_000135.2	1161	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0044500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	203	866	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0044500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	83	606	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519927		P-0044500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	69	640	0	ENST00000263967.3:c.1625A>G	p.Glu542Gly	p.E542G	ENST00000263967	NM_006218.2	542	gAa/gGa																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380347	14380347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	103	343	0	ENST00000256196.4:c.70G>C	p.Gly24Arg	p.G24R	ENST00000256196		24	Ggc/Cgc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712676	43712676	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1341837884		P-0044500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	105	872	0	ENST00000382044.4:c.4508A>G	p.Asn1503Ser	p.N1503S	ENST00000382044	NM_001141980.1	1503	aAt/aGt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475159	40475193	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACCTGGAGCCAAGGAGGAGGAACAATGTTGTTAT	TACCTGGAGCCAAGGAGGAGGAACAATGTTGTTAT	-			P-0044500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	44	483	0	ENST00000264657.5:c.1749-32_1751del		p.X583_splice	ENST00000264657	NM_139276.2	583																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	31	251	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0044514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	36	301	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912660		P-0044514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	84	841	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028895	47028895	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0044514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	25	285	0	ENST00000329236.7:c.199G>T	p.Glu67Ter	p.E67*	ENST00000329236	NM_001204466.1	67	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023897	27023897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	10	88	0	ENST00000324856.7:c.1003C>T	p.Gln335Ter	p.Q335*	ENST00000324856	NM_006015.4	335	Cag/Tag																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217417	7217417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	53	492	0	ENST00000380728.2:c.379C>G	p.His127Asp	p.H127D	ENST00000380728		127	Cat/Gat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258928	16258928	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	168	486	0	ENST00000375759.3:c.6198del	p.Lys2066AsnfsTer20	p.K2066Nfs*20	ENST00000375759	NM_015001.2	2065	Aaa/aa																																																																														
CDC42	998	MSKCC	GRCh37	1	22417937	22417937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	47	150	0	ENST00000344548.3:c.503T>C	p.Val168Ala	p.V168A	ENST00000344548	NM_001039802.1	168	gTa/gCa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	125	448	0	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																																																														
STK40	83931	MSKCC	GRCh37	1	36823851	36823851	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772996133		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	95	294	1	ENST00000373129.3:c.331G>A	p.Gly111Ser	p.G111S	ENST00000373129	NM_032017.1	111	Ggc/Agc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276644	115276644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	90	377	0	ENST00000438362.2:c.815G>T	p.Gly272Val	p.G272V	ENST00000438362	NM_001242891.1	272	gGc/gTc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498701	246498701	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771269963		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	98	380	1	ENST00000388985.4:c.304G>A	p.Val102Ile	p.V102I	ENST00000388985		102	Gtt/Att																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845529	63845529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771981107		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	67	244	0	ENST00000279873.7:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000279873	NM_032199.2	423	cGg/cAg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851143	63851143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	124	449	0	ENST00000279873.7:c.1921G>T	p.Ala641Ser	p.A641S	ENST00000279873	NM_032199.2	641	Gcg/Tcg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710595	114710597	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs754968616		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	254	382	0	ENST00000543371.1:c.85_87del	p.Glu29del	p.E29del	ENST00000543371	NM_001198531.1	27	cAGGag/cag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	62	170	0	ENST00000334205.4:c.2287del	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589662	69589662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	22	86	0	ENST00000168712.1:c.191C>A	p.Pro64His	p.P64H	ENST00000168712	NM_002007.2	64	cCc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425623	49425623	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs751148266		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	155	519	0	ENST00000301067.7:c.12865C>A	p.Leu4289Ile	p.L4289I	ENST00000301067	NM_003482.3	4289	Ctc/Atc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434005	49434005	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	140	558	0	ENST00000301067.7:c.7548del	p.Asn2517IlefsTer26	p.N2517Ifs*26	ENST00000301067	NM_003482.3	2516	ccC/cc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56490962	56490962	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	39	443	1	ENST00000267101.3:c.2413del	p.Ala805HisfsTer95	p.A805Hfs*95	ENST00000267101	NM_001982.3	803	cGg/cg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120785306	120785306	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	114	444	0	ENST00000257552.2:c.802A>G	p.Thr268Ala	p.T268A	ENST00000257552	NM_002442.3	268	Act/Gct																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707822	43707822	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs746063219		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	142	541	1	ENST00000382044.4:c.5059C>T	p.Arg1687Ter	p.R1687*	ENST00000382044	NM_001141980.1	1687	Cga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	169	609	1	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
B2M	567	MSKCC	GRCh37	15	45003813	45003813	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	91	304	0	ENST00000558401.1:c.67+2T>C		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
B2M	567	MSKCC	GRCh37	15	45007688	45007688	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	72	251	0	ENST00000558401.1:c.135C>A	p.Cys45Ter	p.C45*	ENST00000558401	NM_004048.2	45	tgC/tgA																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343582	343582	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	182	592	0	ENST00000262320.3:c.2092del	p.His698ThrfsTer7	p.H698Tfs*7	ENST00000262320	NM_003502.3	698	Cac/ac																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	187	532	3	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226264	2226264	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	111	529	0	ENST00000326181.6:c.1879-2A>G		p.X627_splice	ENST00000326181	NM_032271.2	627																																																																															
PDPK1	5170	MSKCC	GRCh37	16	2647209	2647209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	124	416	0	ENST00000342085.4:c.1487G>T	p.Gly496Val	p.G496V	ENST00000342085	NM_002613.4	496	gGt/gTt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370173	40370173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	181	562	0	ENST00000293328.3:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000293328	NM_012448.3	389	Cgc/Tgc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	253	483	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	167	566	0	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554218	63554218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	117	441	0	ENST00000307078.5:c.521C>T	p.Ala174Val	p.A174V	ENST00000307078	NM_004655.3	174	gCg/gTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	170	552	6	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281200	15281200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	123	553	1	ENST00000263388.2:c.5056G>A	p.Val1686Met	p.V1686M	ENST00000263388	NM_000435.2	1686	Gtg/Atg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366174	15366174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	135	493	0	ENST00000263377.2:c.1981C>G	p.Pro661Ala	p.P661A	ENST00000263377	NM_058243.2	661	Ccg/Gcg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953983	17953983	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	122	477	0	ENST00000458235.1:c.421-2A>G		p.X141_splice	ENST00000458235	NM_000215.3	141																																																																															
ERF	2077	MSKCC	GRCh37	19	42753555	42753555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762723221		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	203	547	0	ENST00000222329.4:c.709C>T	p.Arg237Trp	p.R237W	ENST00000222329	NM_006494.2	237	Cgg/Tgg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082313	16082314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs780080562		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	125	567	3	ENST00000281043.3:c.134dup	p.Glu47GlyfsTer8	p.E47Gfs*8	ENST00000281043	NM_005378.4	43	acc/aCcc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030648	48030648	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	48	335	0	ENST00000234420.5:c.3263del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1088	Ttc/tc																																																																														
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	79	371	2	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961367	54961367	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	94	311	0	ENST00000312783.6:c.265T>C	p.Ser89Pro	p.S89P	ENST00000312783	NM_198436.1	89	Tcc/Ccc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	146	290	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	66	303	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	45	213	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198192	185198192	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs552226638		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	138	378	1	ENST00000265026.3:c.2674A>G	p.Thr892Ala	p.T892A	ENST00000265026	NM_004721.4	892	Acg/Gcg																																																																														
KIT	3815	MSKCC	GRCh37	4	55603385	55603385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	76	258	0	ENST00000288135.5:c.2741G>T	p.Arg914Ile	p.R914I	ENST00000288135	NM_000222.2	914	aGa/aTa																																																																														
TET2	54790	MSKCC	GRCh37	4	106197563	106197563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745668941		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	76	272	0	ENST00000380013.4:c.5896C>T	p.Arg1966Cys	p.R1966C	ENST00000380013	NM_001127208.2	1966	Cgt/Tgt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	235	433	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	51	255	0	ENST00000412585.2:c.626dup	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508116	106508116	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	37	184	0	ENST00000359195.3:c.110T>G	p.Leu37Arg	p.L37R	ENST00000359195	NM_002649.2	37	cTc/cGc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	134	584	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	51	297	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140494247	140494247	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730880418		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	170	608	0	ENST00000288602.6:c.1001C>T	p.Pro334Leu	p.P334L	ENST00000288602	NM_004333.4	334	cCg/cTg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859801	117859801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	67	203	0	ENST00000297338.2:c.1834A>G	p.Thr612Ala	p.T612A	ENST00000297338	NM_006265.2	612	Aca/Gca																																																																														
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	154	433	1	ENST00000380036.4:c.1250del	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98238357	98238357	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146616780		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	130	408	1	ENST00000331920.6:c.1687G>A	p.Ala563Thr	p.A563T	ENST00000331920	NM_000264.3	563	Gcg/Acg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405177	139405177	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1248255443		P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	150	533	0	ENST00000277541.6:c.2668G>A	p.Gly890Ser	p.G890S	ENST00000277541	NM_017617.3	890	Ggc/Agc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	125	242	1	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0044585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	193	679	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0044585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	97	458	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0044585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	108	561	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0044585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	131	458	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
FAM58A	0	MSKCC	GRCh37	X	152857997	152857997	+	synonymous_variant	Silent	SNP	G	G	A	rs201983563		P-0044585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	28	304	0	ENST00000406277.2:c.618C>T	p.Pro206=	p.P206=	ENST00000406277	NM_152274.4	206	ccC/ccT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056169	27056169	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	28	643	1	ENST00000324856.7:c.1165A>T	p.Lys389Ter	p.K389*	ENST00000324856	NM_006015.4	389	Aag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597451	10597451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	546	865	0	ENST00000171111.5:c.1752del	p.Tyr584Ter	p.Y584*	ENST00000171111	NM_203500.1	584	taC/ta																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021471	31021480	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGGCTGAG	CCAGGCTGAG	-			P-0044585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	106	645	0	ENST00000375687.4:c.1474_1483del	p.Ala492ThrfsTer208	p.A492Tfs*208	ENST00000375687	NM_015338.5	490	atCCAGGCTGAG/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	101	289	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0044655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	170	700	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	134	326	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs876660754		P-0044663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	197	651	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48586236	48586236	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0044663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	19	342	0	ENST00000342988.3:c.905G>A	p.Trp302Ter	p.W302*	ENST00000342988	NM_005359.5	302	tGg/tAg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42879888	42879894	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTCCT	CGCTCCT	-			P-0044663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	51	199	0	ENST00000398585.3:c.38_44del	p.Glu13AlafsTer26	p.E13Afs*26	ENST00000398585	NM_001135099.1	13	gAGGAGCGc/gc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0044736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	228	573	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578410	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCGCCT	CAGCGCCT	-			P-0044736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	72	567	0	ENST00000269305.4:c.520_527del	p.Arg174ProfsTer4	p.R174Pfs*4	ENST00000269305	NM_001126112.2	174	AGGCGCTGc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	107	316	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060501195		P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	62	610	0	ENST00000269305.4:c.313G>A	p.Gly105Ser	p.G105S	ENST00000269305	NM_001126112.2	105	Ggc/Agc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941290	71941290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	58	611	0	ENST00000298229.2:c.1065C>G	p.Asp355Glu	p.D355E	ENST00000298229	NM_001567.3	355	gaC/gaG																																																																														
BLM	641	MSKCC	GRCh37	15	91292806	91292806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	47	371	0	ENST00000355112.3:c.308G>T	p.Gly103Val	p.G103V	ENST00000355112	NM_000057.2	103	gGa/gTa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78866543	78866543	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	66	455	0	ENST00000306801.3:c.2116A>T	p.Thr706Ser	p.T706S	ENST00000306801	NM_020761.2	706	Acc/Tcc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794728	42794728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	69	612	0	ENST00000575354.2:c.1808C>G	p.Pro603Arg	p.P603R	ENST00000575354	NM_015125.3	603	cCc/cGc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47139517	47139517	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	62	406	0	ENST00000409792.3:c.5070del	p.Gly1691GlufsTer14	p.G1691Efs*14	ENST00000409792	NM_014159.6	1690	ggA/gg																																																																														
ATR	545	MSKCC	GRCh37	3	142172019	142172019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	35	416	0	ENST00000350721.4:c.7712G>C	p.Gly2571Ala	p.G2571A	ENST00000350721	NM_001184.3	2571	gGg/gCg																																																																														
ATRX	546	MSKCC	GRCh37	X	76938356	76938356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	47	456	0	ENST00000373344.5:c.2392G>C	p.Ala798Pro	p.A798P	ENST00000373344	NM_000489.3	798	Gct/Cct																																																																														
MGA	23269	MSKCC	GRCh37	15	41989159	41989159	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	39	435	0	ENST00000219905.7:c.1951C>G	p.Pro651Ala	p.P651A	ENST00000219905	NM_001164273.1	651	Cca/Gca																																																																														
MGA	23269	MSKCC	GRCh37	15	41989155	41989156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	37	436	0	ENST00000219905.7:c.1950dup	p.Pro651SerfsTer6	p.P651Sfs*6	ENST00000219905	NM_001164273.1	649	-/T																																																																														
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs28934577		P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	225	700	0	ENST00000269305.4:c.770T>G	p.Leu257Arg	p.L257R	ENST00000269305	NM_001126112.2	257	cTg/cGg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543901	212543901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	97	400	0	ENST00000342788.4:c.1498G>T	p.Gly500Ter	p.G500*	ENST00000342788	NM_005235.2	500	Gga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911545	114911545	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	166	446	0	ENST00000543371.1:c.1063A>C	p.Asn355His	p.N355H	ENST00000543371	NM_001198531.1	355	Aat/Cat																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885293	111885293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	198	639	0	ENST00000341259.2:c.1181G>A	p.Ser394Asn	p.S394N	ENST00000341259	NM_005475.2	394	aGc/aAc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234426	41234426	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs949793708		P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	90	507	0	ENST00000357654.3:c.4352A>G	p.Glu1451Gly	p.E1451G	ENST00000357654	NM_007294.3	1451	gAa/gGa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812210	212812210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	63	373	0	ENST00000342788.4:c.366C>G	p.Asn122Lys	p.N122K	ENST00000342788	NM_005235.2	122	aaC/aaG																																																																														
APC	324	MSKCC	GRCh37	5	112173839	112173839	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	223	453	0	ENST00000257430.4:c.2548A>T	p.Arg850Ter	p.R850*	ENST00000257430	NM_000038.5	850	Aga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17851045		P-0044755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	58	490	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581178	48581179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0044755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	50	294	0	ENST00000342988.3:c.485_486dup	p.Val163MetfsTer40	p.V163Mfs*40	ENST00000342988	NM_005359.5	161	gaa/gaATa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	471	404	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540652		P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	348	648	1	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
ATM	472	MSKCC	GRCh37	11	108200961	108200961	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782310		P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	56	354	0	ENST00000278616.4:c.7328G>A	p.Arg2443Gln	p.R2443Q	ENST00000278616	NM_000051.3	2443	cGa/cAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968233	134968233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753895808		P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	271	661	0	ENST00000398015.3:c.2746G>A	p.Val916Met	p.V916M	ENST00000398015	NM_004441.4	916	Gtg/Atg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978499	70978499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141769540		P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	35	414	0	ENST00000276594.2:c.1154C>T	p.Pro385Leu	p.P385L	ENST00000276594	NM_024504.3	385	cCg/cTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045527	47045527	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	347	338	1	ENST00000329236.7:c.2260G>T	p.Glu754Ter	p.E754*	ENST00000329236	NM_001204466.1	754	Gag/Tag																																																																														
KDR	3791	MSKCC	GRCh37	4	55971127	55971127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	82	508	0	ENST00000263923.4:c.1670C>T	p.Pro557Leu	p.P557L	ENST00000263923	NM_002253.2	557	cCt/cTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262429	16262429	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	52	373	0	ENST00000375759.3:c.9694G>T	p.Glu3232Ter	p.E3232*	ENST00000375759	NM_015001.2	3232	Gaa/Taa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193202280	193202280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	70	372	0	ENST00000367435.3:c.1312G>A	p.Asp438Asn	p.D438N	ENST00000367435	NM_024529.4	438	Gac/Aac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307510	118307510	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	115	674	0	ENST00000534358.1:c.283T>C	p.Ser95Pro	p.S95P	ENST00000534358	NM_005933.3	95	Tca/Cca																																																																														
RB1	5925	MSKCC	GRCh37	13	48937084	48937085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	92	219	0	ENST00000267163.4:c.853dup	p.Ile285AsnfsTer3	p.I285Nfs*3	ENST00000267163	NM_000321.2	284	-/A																																																																														
NUP93	9688	MSKCC	GRCh37	16	56855431	56855431	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	45	298	0	ENST00000308159.5:c.580G>C	p.Glu194Gln	p.E194Q	ENST00000308159	NM_014669.4	194	Gag/Cag																																																																														
NUP93	9688	MSKCC	GRCh37	16	56870600	56870600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	81	413	0	ENST00000308159.5:c.1870G>A	p.Glu624Lys	p.E624K	ENST00000308159	NM_014669.4	624	Gag/Aag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223102	41223102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	94	613	0	ENST00000357654.3:c.4829C>A	p.Ser1610Tyr	p.S1610Y	ENST00000357654	NM_007294.3	1610	tCt/tAt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243523	41243523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	58	570	0	ENST00000357654.3:c.4025C>T	p.Ser1342Leu	p.S1342L	ENST00000357654	NM_007294.3	1342	tCa/tTa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243922	41243922	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	444	607	0	ENST00000357654.3:c.3626T>C	p.Leu1209Ser	p.L1209S	ENST00000357654	NM_007294.3	1209	tTa/tCa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212043	36212043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	112	1044	0	ENST00000222270.7:c.1794G>C	p.Glu598Asp	p.E598D	ENST00000222270	NM_014727.1	598	gaG/gaC																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095962	178095962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	51	397	0	ENST00000397062.3:c.1369G>C	p.Asp457His	p.D457H	ENST00000397062	NM_006164.4	457	Gat/Cat																																																																														
ATR	545	MSKCC	GRCh37	3	142274959	142274959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1301785134		P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	66	340	0	ENST00000350721.4:c.2101G>A	p.Asp701Asn	p.D701N	ENST00000350721	NM_001184.3	701	Gac/Aac																																																																														
TP63	8626	MSKCC	GRCh37	3	189590686	189590686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	75	434	0	ENST00000264731.3:c.1251C>G	p.Ile417Met	p.I417M	ENST00000264731	NM_003722.4	417	atC/atG																																																																														
KDR	3791	MSKCC	GRCh37	4	55976711	55976711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	81	481	0	ENST00000263923.4:c.1114G>C	p.Glu372Gln	p.E372Q	ENST00000263923	NM_002253.2	372	Gag/Cag																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345728	152345728	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	32	175	0	ENST00000359321.1:c.842G>C	p.Ter281SerextTer4	p.*281Sext*4	ENST00000359321	NM_005431.1	281	tGa/tCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484121	8484121	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	53	355	0	ENST00000356435.5:c.3411A>G	p.Ile1137Met	p.I1137M	ENST00000356435		1137	atA/atG																																																																														
TEK	7010	MSKCC	GRCh37	9	27180357	27180357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	55	354	0	ENST00000380036.4:c.1021G>A	p.Glu341Lys	p.E341K	ENST00000380036	NM_000459.3	341	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922689	44922690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	162	166	0	ENST00000377967.4:c.1552dup	p.Val518GlyfsTer8	p.V518Gfs*8	ENST00000377967	NM_021140.2	517	cag/caGg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775780	9775780	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765031777		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	133	637	0	ENST00000377346.4:c.323G>A	p.Arg108His	p.R108H	ENST00000377346	NM_005026.3	108	cGc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11206776	11206776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	127	421	0	ENST00000361445.4:c.4643C>T	p.Ala1548Val	p.A1548V	ENST00000361445	NM_004958.3	1548	gCt/gTt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11307989	11307989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	152	434	0	ENST00000361445.4:c.1003G>T	p.Gly335Trp	p.G335W	ENST00000361445	NM_004958.3	335	Ggg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199451	16199451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	99	299	1	ENST00000375759.3:c.224G>A	p.Arg75His	p.R75H	ENST00000375759	NM_015001.2	75	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257354	16257354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	111	395	0	ENST00000375759.3:c.4619C>T	p.Ser1540Phe	p.S1540F	ENST00000375759	NM_015001.2	1540	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257729	16257729	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199930614		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	97	375	0	ENST00000375759.3:c.4994C>T	p.Ala1665Val	p.A1665V	ENST00000375759	NM_015001.2	1665	gCg/gTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257980	16257980	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761228108		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	87	423	1	ENST00000375759.3:c.5245G>A	p.Val1749Ile	p.V1749I	ENST00000375759	NM_015001.2	1749	Gta/Ata																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259270	16259270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774668447		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	73	357	0	ENST00000375759.3:c.6535G>A	p.Ala2179Thr	p.A2179T	ENST00000375759	NM_015001.2	2179	Gca/Aca																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262348	16262348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	57	294	0	ENST00000375759.3:c.9613G>A	p.Ala3205Thr	p.A3205T	ENST00000375759	NM_015001.2	3205	Gca/Aca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099430	27099430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1227227387		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	81	371	1	ENST00000324856.7:c.3667C>T	p.Arg1223Cys	p.R1223C	ENST00000324856	NM_006015.4	1223	Cgc/Tgc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937880	36937880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	84	769	0	ENST00000361632.4:c.956G>A	p.Ser319Asn	p.S319N	ENST00000361632		319	aGc/aAc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797139	45797139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150792276		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	178	711	0	ENST00000372115.3:c.1234C>T	p.Arg412Cys	p.R412C	ENST00000372115	NM_001048171.1	412	Cgt/Tgt																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46726956	46726956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	93	358	1	ENST00000371975.4:c.790G>A	p.Ala264Thr	p.A264T	ENST00000371975	NM_003579.3	264	Gcc/Acc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	87	286	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429956	78429956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	38	255	0	ENST00000370768.2:c.923G>A	p.Arg308His	p.R308H	ENST00000370768	NM_003902.3	308	cGc/cAc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115260813	115260813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768724629		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	80	374	0	ENST00000438362.2:c.2512C>T	p.Arg838Cys	p.R838C	ENST00000438362	NM_001242891.1	838	Cgt/Tgt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843439	156843439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	148	565	0	ENST00000524377.1:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000524377	NM_002529.3	289	Cag/Tag																																																																														
NUF2	83540	MSKCC	GRCh37	1	163325170	163325170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144589776		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	55	266	0	ENST00000271452.3:c.1306G>A	p.Gly436Ser	p.G436S	ENST00000271452	NM_145697.2	436	Ggt/Agt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176015383	176015383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	69	264	0	ENST00000367669.3:c.1355C>T	p.Thr452Ile	p.T452I	ENST00000367669	NM_022457.5	452	aCt/aTt																																																																														
MDM4	4194	MSKCC	GRCh37	1	204499872	204499872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	101	364	1	ENST00000367182.3:c.214C>T	p.His72Tyr	p.H72Y	ENST00000367182	NM_001278516.1	72	Cat/Tat																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226253371	226253371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	46	201	0	ENST00000366813.1:c.143C>T	p.Ala48Val	p.A48V	ENST00000366813		48	gCg/gTg																																																																														
PARP1	142	MSKCC	GRCh37	1	226573322	226573322	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	101	423	0	ENST00000366794.5:c.894C>A	p.Cys298Ter	p.C298*	ENST00000366794	NM_001618.3	298	tgC/tgA																																																																														
AKT3	10000	MSKCC	GRCh37	1	243727057	243727057	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	88	334	0	ENST00000263826.5:c.913A>C	p.Thr305Pro	p.T305P	ENST00000263826	NM_005465.4	305	Aca/Cca																																																																														
RET	5979	MSKCC	GRCh37	10	43612161	43612161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	47	244	0	ENST00000355710.3:c.2266G>A	p.Ala756Thr	p.A756T	ENST00000355710	NM_020975.4	756	Gcc/Acc																																																																														
TET1	80312	MSKCC	GRCh37	10	70450805	70450805	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759636615		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	83	406	0	ENST00000373644.4:c.5645C>T	p.Thr1882Met	p.T1882M	ENST00000373644	NM_030625.2	1882	aCg/aTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs786201995		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	121	341	0	ENST00000371953.3:c.70G>C	p.Asp24His	p.D24H	ENST00000371953	NM_000314.4	24	Gac/Cac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685289	89685289	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	53	176	0	ENST00000371953.3:c.188del	p.Asn63ThrfsTer36	p.N63Tfs*36	ENST00000371953	NM_000314.4	62	Aaa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	114	364	0	ENST00000371953.3:c.686C>A	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tAa																																																																														
HRAS	3265	MSKCC	GRCh37	11	533535	533535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	172	595	1	ENST00000311189.7:c.368G>A	p.Arg123His	p.R123H	ENST00000311189		123	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	130	588	1	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941429	71941429	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754156985		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	152	614	3	ENST00000298229.2:c.1114C>T	p.Arg372Cys	p.R372C	ENST00000298229	NM_001567.3	372	Cgt/Tgt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	291	708	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
YAP1	10413	MSKCC	GRCh37	11	102076650	102076650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	87	285	0	ENST00000282441.5:c.829G>A	p.Ala277Thr	p.A277T	ENST00000282441	NM_001130145.2	277	Gct/Act																																																																														
ATM	472	MSKCC	GRCh37	11	108213967	108213967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876659872		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	54	211	0	ENST00000278616.4:c.8287C>T	p.Arg2763Ter	p.R2763*	ENST00000278616	NM_000051.3	2763	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402328	402328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	30	259	0	ENST00000399788.2:c.4463G>A	p.Ser1488Asn	p.S1488N	ENST00000399788	NM_001042603.1	1488	aGc/aAc																																																																														
RAD52	5893	MSKCC	GRCh37	12	1036408	1036408	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778385100		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	110	417	0	ENST00000358495.3:c.370G>A	p.Val124Ile	p.V124I	ENST00000358495	NM_134424.2	124	Gtt/Att																																																																														
RECQL	5965	MSKCC	GRCh37	12	21630862	21630862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202110155		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	41	393	0	ENST00000421138.2:c.742G>A	p.Ala248Thr	p.A248T	ENST00000421138		248	Gca/Aca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420108	49420108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398123729		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	153	448	0	ENST00000301067.7:c.15641G>A	p.Arg5214His	p.R5214H	ENST00000301067	NM_003482.3	5214	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427588	49427588	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	125	496	0	ENST00000301067.7:c.10900C>T	p.Gln3634Ter	p.Q3634*	ENST00000301067	NM_003482.3	3634	Cag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481947	56481947	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs755433568		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	83	360	0	ENST00000267101.3:c.874+1G>A		p.X292_splice	ENST00000267101	NM_001982.3	292																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864545	57864545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	154	631	1	ENST00000228682.2:c.2022G>T	p.Gln674His	p.Q674H	ENST00000228682	NM_005269.2	674	caG/caT																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864610	57864610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	190	641	0	ENST00000228682.2:c.2087C>A	p.Ala696Asp	p.A696D	ENST00000228682	NM_005269.2	696	gCt/gAt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112323	115112323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	14	151	0	ENST00000257566.3:c.1417C>T	p.Leu473Phe	p.L473F	ENST00000257566	NM_016569.3	473	Ctc/Ttc																																																																														
POLE	5426	MSKCC	GRCh37	12	133249829	133249829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	97	355	0	ENST00000320574.5:c.1394C>T	p.Ala465Val	p.A465V	ENST00000320574	NM_006231.2	465	gCc/gTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133253214	133253214	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	108	411	0	ENST00000320574.5:c.827T>A	p.Ile276Asn	p.I276N	ENST00000320574	NM_006231.2	276	aTt/aAt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549289	21549289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	136	543	0	ENST00000382592.4:c.2987C>A	p.Pro996His	p.P996H	ENST00000382592	NM_014572.2	996	cCc/cAc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877387	28877387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747687298		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	92	331	0	ENST00000282397.4:c.3934G>A	p.Ala1312Thr	p.A1312T	ENST00000282397	NM_002019.4	1312	Gct/Act																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005282	29005282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	71	245	2	ENST00000282397.4:c.979C>T	p.His327Tyr	p.H327Y	ENST00000282397	NM_002019.4	327	Cat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910789	32910789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	62	267	0	ENST00000380152.3:c.2297C>T	p.Ala766Val	p.A766V	ENST00000380152		766	gCc/gTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930610	32930610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358973		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	90	317	0	ENST00000380152.3:c.7481G>A	p.Arg2494Gln	p.R2494Q	ENST00000380152		2494	cGa/cAa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435390	110435390	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1398081220		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	123	390	0	ENST00000375856.3:c.3011G>A	p.Gly1004Asp	p.G1004D	ENST00000375856	NM_003749.2	1004	gGc/gAc																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40682064	40682064	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs963577856		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	151	432	0	ENST00000249776.8:c.619G>A	p.Val207Ile	p.V207I	ENST00000249776	NM_033286.3	207	Gta/Ata																																																																														
MGA	23269	MSKCC	GRCh37	15	42032375	42032375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	110	351	0	ENST00000219905.7:c.4559C>T	p.Ala1520Val	p.A1520V	ENST00000219905	NM_001164273.1	1520	gCg/gTg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477178	67477178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	120	425	2	ENST00000327367.4:c.985G>A	p.Ala329Thr	p.A329T	ENST00000327367	NM_005902.3	329	Gcc/Acc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112008	2112008	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	100	373	1	ENST00000219476.3:c.1256C>A	p.Pro419His	p.P419H	ENST00000219476	NM_000548.3	419	cCt/cAt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223541	2223541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs942789564		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	128	615	3	ENST00000326181.6:c.1072G>A	p.Ala358Thr	p.A358T	ENST00000326181	NM_032271.2	358	Gca/Aca																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633218	3633218	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	164	733	0	ENST00000294008.3:c.5033del	p.Pro1678GlnfsTer37	p.P1678Qfs*37	ENST00000294008	NM_032444.2	1678	cCa/ca																																																																														
SLX4	84464	MSKCC	GRCh37	16	3656601	3656601	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1395992833		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	213	585	1	ENST00000294008.3:c.634C>T	p.Arg212Ter	p.R212*	ENST00000294008	NM_032444.2	212	Cga/Tga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781369	3781369	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1159046430		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	134	646	1	ENST00000262367.5:c.4996G>A	p.Ala1666Thr	p.A1666T	ENST00000262367	NM_004380.2	1666	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781375	3781375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	156	646	3	ENST00000262367.5:c.4990C>T	p.Arg1664Cys	p.R1664C	ENST00000262367	NM_004380.2	1664	Cgc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031933	10031933	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775591257		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	101	518	0	ENST00000330684.3:c.890G>A	p.Gly297Asp	p.G297D	ENST00000330684	NM_001134407.1	297	gGc/gAc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23649398	23649398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144944814		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	60	270	0	ENST00000261584.4:c.101G>A	p.Arg34His	p.R34H	ENST00000261584	NM_024675.3	34	cGc/cAc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865830	56865830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145146218		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	80	275	0	ENST00000308159.5:c.1162C>T	p.Arg388Trp	p.R388W	ENST00000308159	NM_014669.4	388	Cgg/Tgg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865834	56865834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	85	277	0	ENST00000308159.5:c.1166C>T	p.Ala389Val	p.A389V	ENST00000308159	NM_014669.4	389	gCc/gTc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	134	389	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650654	67650654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	114	321	0	ENST00000264010.4:c.959G>A	p.Arg320His	p.R320H	ENST00000264010	NM_006565.3	320	cGt/cAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822199	72822199	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781682309		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	139	589	0	ENST00000268489.5:c.9976G>A	p.Ala3326Thr	p.A3326T	ENST00000268489	NM_006885.3	3326	Gcc/Acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993161	72993161	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754613484		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	174	593	0	ENST00000268489.5:c.884G>A	p.Arg295His	p.R295H	ENST00000268489	NM_006885.3	295	cGt/cAt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965107	81965107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760133960		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	93	322	0	ENST00000359376.3:c.2587G>A	p.Ala863Thr	p.A863T	ENST00000359376	NM_002661.3	863	Gcc/Acc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7983137	7983137	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	135	514	0	ENST00000319144.4:c.877A>C	p.Met293Leu	p.M293L	ENST00000319144	NM_001139.2	293	Atg/Ctg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131262	17131262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778587763		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	192	662	2	ENST00000285071.4:c.190G>A	p.Ala64Thr	p.A64T	ENST00000285071	NM_144997.5	64	Gca/Aca																																																																														
NF1	4763	MSKCC	GRCh37	17	29553583	29553583	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1479669686		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	39	151	0	ENST00000358273.4:c.2132G>A	p.Arg711His	p.R711H	ENST00000358273	NM_001042492.2	711	cGc/cAc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375496	40375496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121908502		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	144	495	0	ENST00000293328.3:c.454C>T	p.Arg152Ter	p.R152*	ENST00000293328	NM_012448.3	152	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234451	41234451	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs41293455		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	126	341	0	ENST00000357654.3:c.4327C>T	p.Arg1443Ter	p.R1443*	ENST00000357654	NM_007294.3	1443	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	142	573	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CD79B	974	MSKCC	GRCh37	17	62009579	62009579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	152	519	0	ENST00000392795.3:c.43G>A	p.Val15Met	p.V15M	ENST00000392795	NM_001039933.1	15	Gtg/Atg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120178	70120178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057518216		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	95	347	1	ENST00000245479.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000245479	NM_000346.3	394	Cga/Tga																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39575960	39575960	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	59	208	0	ENST00000262039.4:c.891+2T>C		p.X297_splice	ENST00000262039	NM_002647.2	297																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395736	45395736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	47	294	0	ENST00000262160.6:c.398G>A	p.Arg133His	p.R133H	ENST00000262160	NM_005901.5	133	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603020	48603020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	37	215	1	ENST00000342988.3:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000342988	NM_005359.5	441	Cgt/Tgt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56390327	56390327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	56	216	0	ENST00000348428.3:c.1066C>T	p.His356Tyr	p.H356Y	ENST00000348428	NM_006785.3	356	Cac/Tac																																																																														
BCL2	596	MSKCC	GRCh37	18	60795922	60795922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	115	439	0	ENST00000333681.4:c.656C>T	p.Thr219Ile	p.T219I	ENST00000333681		219	aCt/aTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129635	11129635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	128	478	0	ENST00000344626.4:c.2441C>T	p.Thr814Met	p.T814M	ENST00000344626	NM_003072.3	814	aCg/aTg																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627627	14627627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	132	448	1	ENST00000254322.2:c.443G>A	p.Arg148His	p.R148H	ENST00000254322	NM_006145.1	148	cGc/cAc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266970	18266970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757629395		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	70	190	2	ENST00000222254.8:c.281G>A	p.Arg94His	p.R94H	ENST00000222254	NM_005027.3	94	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211040	36211040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	158	721	1	ENST00000222270.7:c.791G>A	p.Gly264Asp	p.G264D	ENST00000222270	NM_014727.1	264	gGc/gAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36217221	36217221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	152	556	0	ENST00000222270.7:c.3970C>A	p.Leu1324Ile	p.L1324I	ENST00000222270	NM_014727.1	1324	Ctc/Atc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221666	36221666	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	177	685	1	ENST00000222270.7:c.5335C>T	p.Arg1779Ter	p.R1779*	ENST00000222270	NM_014727.1	1779	Cga/Tga																																																																														
ERF	2077	MSKCC	GRCh37	19	42752913	42752913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750229302		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	184	691	0	ENST00000222329.4:c.1351G>A	p.Gly451Arg	p.G451R	ENST00000222329	NM_006494.2	451	Ggg/Agg																																																																														
CIC	23152	MSKCC	GRCh37	19	42799003	42799003	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200799936		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	146	669	1	ENST00000575354.2:c.4487G>A	p.Arg1496His	p.R1496H	ENST00000575354	NM_015125.3	1496	cGc/cAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905773	50905773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	117	632	0	ENST00000440232.2:c.821C>T	p.Ala274Val	p.A274V	ENST00000440232	NM_002691.3	274	gCc/gTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25497902	25497902	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1311728146		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	167	570	0	ENST00000264709.3:c.547C>T	p.Arg183Trp	p.R183W	ENST00000264709	NM_175629.2	183	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	29432668	29432668	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45502292		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	122	481	1	ENST00000389048.3:c.3820G>A	p.Ala1274Thr	p.A1274T	ENST00000389048	NM_004304.4	1274	Gcc/Acc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198281489	198281489	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	124	338	0	ENST00000335508.6:c.642del	p.Lys214AsnfsTer17	p.K214Nfs*17	ENST00000335508	NM_012433.2	214	aaA/aa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661035	227661035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	101	575	0	ENST00000305123.5:c.2420C>A	p.Ser807Tyr	p.S807Y	ENST00000305123	NM_005544.2	807	tCt/tAt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	135	681	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31381362	31381362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113400552		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	127	293	1	ENST00000328111.2:c.1087C>T	p.Arg363Cys	p.R363C	ENST00000328111	NM_006892.3	363	Cgt/Tgt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31388006	31388006	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121908943		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	89	297	0	ENST00000328111.2:c.1807G>A	p.Ala603Thr	p.A603T	ENST00000328111	NM_006892.3	603	Gct/Act																																																																														
SRC	6714	MSKCC	GRCh37	20	36012672	36012672	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1479413147		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	42	127	1	ENST00000358208.4:c.116G>A	p.Ser39Asn	p.S39N	ENST00000358208		39	aGc/aAc																																																																														
SRC	6714	MSKCC	GRCh37	20	36012792	36012792	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764609637		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	34	122	0	ENST00000358208.4:c.236C>T	p.Ala79Val	p.A79V	ENST00000358208		79	gCg/gTg																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961394	54961394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	54	189	0	ENST00000312783.6:c.238C>T	p.Gln80Ter	p.Q80*	ENST00000312783	NM_198436.1	80	Cag/Tag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57470688	57470688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	67	217	0	ENST00000371085.3:c.161G>T	p.Ser54Ile	p.S54I	ENST00000371085	NM_000516.4	54	aGc/aTc																																																																														
NF2	4771	MSKCC	GRCh37	22	30069382	30069382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	162	529	2	ENST00000338641.4:c.1247C>T	p.Ala416Val	p.A416V	ENST00000338641	NM_000268.3	416	gCg/gTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41574775	41574775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	156	538	1	ENST00000263253.7:c.7060G>A	p.Ala2354Thr	p.A2354T	ENST00000263253	NM_001429.3	2354	Gcc/Acc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098642	47098642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	125	466	0	ENST00000409792.3:c.6632G>T	p.Gly2211Val	p.G2211V	ENST00000409792	NM_014159.6	2211	gGa/gTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47127731	47127731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	144	337	0	ENST00000409792.3:c.5351C>T	p.Ala1784Val	p.A1784V	ENST00000409792	NM_014159.6	1784	gCa/gTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162904	47162904	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs757432733		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	94	301	0	ENST00000409792.3:c.3222G>T	p.Lys1074Asn	p.K1074N	ENST00000409792	NM_014159.6	1074	aaG/aaT																																																																														
MST1	4485	MSKCC	GRCh37	3	49721600	49721600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	33	161	0	ENST00000449682.2:c.2039C>T	p.Ala680Val	p.A680V	ENST00000449682	NM_020998.3	680	gCc/gTc																																																																														
MST1	4485	MSKCC	GRCh37	3	49723507	49723507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	16	65	0	ENST00000449682.2:c.1135G>A	p.Val379Met	p.V379M	ENST00000449682	NM_020998.3	379	Gtg/Atg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936659	49936659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376534011		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	105	481	1	ENST00000296474.3:c.1268G>A	p.Arg423His	p.R423H	ENST00000296474	NM_002447.2	423	cGc/cAc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247353	71247353	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	111	385	0	ENST00000318789.4:c.180G>T	p.Gln60His	p.Q60H	ENST00000318789	NM_032682.5	60	caG/caT																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119720910	119720910	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	67	305	0	ENST00000316626.5:c.265C>T	p.Gln89Ter	p.Q89*	ENST00000316626		89	Cag/Tag																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204747	128204747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	142	725	0	ENST00000341105.2:c.694G>T	p.Gly232Cys	p.G232C	ENST00000341105	NM_032638.4	232	Ggc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807841	1807841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	162	725	0	ENST00000260795.2:c.1900G>A	p.Ala634Thr	p.A634T	ENST00000260795		634	Gca/Aca																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980527	1980527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760185069		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	88	539	1	ENST00000382895.3:c.3989C>T	p.Ala1330Val	p.A1330V	ENST00000382895	NM_133330.2	1330	gCg/gTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55594061	55594061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs891140054		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	100	308	0	ENST00000288135.5:c.1847C>T	p.Ala616Val	p.A616V	ENST00000288135	NM_000222.2	616	gCg/gTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467859	66467859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	62	237	0	ENST00000273854.3:c.410G>A	p.Cys137Tyr	p.C137Y	ENST00000273854	NM_004439.5	137	tGc/tAc																																																																														
FAM175A	0	MSKCC	GRCh37	4	84391521	84391521	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542570943		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	76	255	0	ENST00000321945.7:c.311G>A	p.Arg104His	p.R104H	ENST00000321945	NM_139076.2	104	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	84	329	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268140	153268140	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185892035		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	98	267	0	ENST00000281708.4:c.668G>A	p.Arg223His	p.R223H	ENST00000281708	NM_033632.3	223	cGc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522466	187522466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781093382		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	93	338	3	ENST00000441802.2:c.11597C>T	p.Ala3866Val	p.A3866V	ENST00000441802	NM_005245.3	3866	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187527264	187527264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754008095		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	81	409	0	ENST00000441802.2:c.10310C>T	p.Ala3437Val	p.A3437V	ENST00000441802	NM_005245.3	3437	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627774	187627774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1183516785		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	97	345	0	ENST00000441802.2:c.3208C>T	p.Arg1070Ter	p.R1070*	ENST00000441802	NM_005245.3	1070	Cga/Tga																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515156	31515156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	79	490	0	ENST00000344624.3:c.1229C>A	p.Pro410His	p.P410H	ENST00000344624		410	cCt/cAt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876515	35876515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	105	429	0	ENST00000303115.3:c.1307C>T	p.Pro436Leu	p.P436L	ENST00000303115	NM_002185.3	436	cCc/cTc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522813	67522813	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	76	221	0	ENST00000274335.5:c.310A>T	p.Thr104Ser	p.T104S	ENST00000274335		104	Act/Tct																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593263	67593263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	72	203	0	ENST00000274335.5:c.2009G>A	p.Cys670Tyr	p.C670Y	ENST00000274335		670	tGt/tAt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	140	434	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112176555	112176555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771967537		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	43	272	0	ENST00000257430.4:c.5264C>T	p.Ala1755Val	p.A1755V	ENST00000257430	NM_000038.5	1755	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112176676	112176676	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	54	199	0	ENST00000257430.4:c.5390del	p.Asn1797IlefsTer3	p.N1797Ifs*3	ENST00000257430	NM_000038.5	1795	tcA/tc																																																																														
APC	324	MSKCC	GRCh37	5	112178764	112178764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	85	287	0	ENST00000257430.4:c.7473G>A	p.Met2491Ile	p.M2491I	ENST00000257430	NM_000038.5	2491	atG/atA																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924480	131924480	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139372231		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	94	314	0	ENST00000265335.6:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000265335		385	Cgt/Tgt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523291	176523291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776973649		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	124	618	1	ENST00000292408.4:c.1948C>T	p.Arg650Cys	p.R650C	ENST00000292408	NM_213647.1	650	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	85	275	2	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
IRF4	3662	MSKCC	GRCh37	6	393321	393321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	106	396	0	ENST00000380956.4:c.169G>A	p.Ala57Thr	p.A57T	ENST00000380956	NM_001195286.1	57	Gcg/Acg																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26046027	26046027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	60	254	0	ENST00000540144.1:c.389G>A	p.Arg130His	p.R130H	ENST00000540144	NM_003531.2	130	cGc/cAc																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197213	26197213	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1210592442		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	90	376	0	ENST00000356476.2:c.266C>T	p.Ala89Val	p.A89V	ENST00000356476		89	gCg/gTg																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858252	27858252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	162	467	0	ENST00000359303.2:c.319G>A	p.Asp107Asn	p.D107N	ENST00000359303	NM_003535.2	107	Gac/Aac																																																																														
TAP1	6890	MSKCC	GRCh37	6	32820271	32820271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	101	436	0	ENST00000354258.4:c.787G>A	p.Ala263Thr	p.A263T	ENST00000354258	NM_000593.5	263	Gcc/Acc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287204	33287204	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	123	505	0	ENST00000374542.5:c.1893del	p.Lys631AsnfsTer14	p.K631Nfs*14	ENST00000374542	NM_001141970.1	631	aaA/aa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287520	33287520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141395832		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	124	442	2	ENST00000374542.5:c.1577G>A	p.Arg526His	p.R526H	ENST00000374542	NM_001141970.1	526	cGc/cAc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289056	33289056	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	162	544	0	ENST00000374542.5:c.496T>G	p.Leu166Val	p.L166V	ENST00000374542	NM_001141970.1	166	Ttg/Gtg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956607	93956607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777383467		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	49	271	0	ENST00000369303.4:c.2629C>T	p.Arg877Cys	p.R877C	ENST00000369303	NM_004440.3	877	Cgt/Tgt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958135	2958135	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150990488		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	133	588	0	ENST00000396946.4:c.2597G>A	p.Arg866Gln	p.R866Q	ENST00000396946	NM_032415.4	866	cGg/cAg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6031676	6031676	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780063		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	93	341	0	ENST00000265849.7:c.916G>A	p.Val306Met	p.V306M	ENST00000265849	NM_000535.5	306	Gtg/Atg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441985	6441985	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	109	367	1	ENST00000356142.4:c.544C>T	p.Arg182Ter	p.R182*	ENST00000356142	NM_018890.3	182	Cga/Tga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729709	41729709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768547360		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	100	430	0	ENST00000242208.4:c.820G>A	p.Gly274Arg	p.G274R	ENST00000242208	NM_002192.2	274	Gga/Aga																																																																														
MET	4233	MSKCC	GRCh37	7	116435817	116435817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	130	444	0	ENST00000397752.3:c.3907C>A	p.Leu1303Ile	p.L1303I	ENST00000397752	NM_000245.2	1303	Cta/Ata																																																																														
MET	4233	MSKCC	GRCh37	7	116435985	116435985	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1443741792		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	135	447	0	ENST00000397752.3:c.3980G>A	p.Arg1327His	p.R1327H	ENST00000397752	NM_000245.2	1327	cGc/cAc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852125	128852125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	174	709	0	ENST00000249373.3:c.2197G>A	p.Val733Ile	p.V733I	ENST00000249373	NM_005631.4	733	Gtc/Atc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148515059	148515059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	82	312	0	ENST00000320356.2:c.1150G>T	p.Asp384Tyr	p.D384Y	ENST00000320356	NM_004456.4	384	Gac/Tac																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133214	38133214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	112	402	0	ENST00000317025.8:c.4259G>A	p.Ser1420Asn	p.S1420N	ENST00000317025	NM_023034.1	1420	aGc/aAc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38153388	38153388	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	127	458	0	ENST00000317025.8:c.2841G>A	p.Trp947Ter	p.W947*	ENST00000317025	NM_023034.1	947	tgG/tgA																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271162	38271162	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1437821654		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	92	416	0	ENST00000425967.3:c.2546G>A	p.Gly849Glu	p.G849E	ENST00000425967	NM_001174067.1	849	gGa/gAa																																																																														
LYN	4067	MSKCC	GRCh37	8	56866514	56866514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	157	528	0	ENST00000519728.1:c.761G>A	p.Gly254Asp	p.G254D	ENST00000519728	NM_002350.3	254	gGc/gAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68981360	68981360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1474820456		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	68	238	0	ENST00000288368.4:c.1432G>A	p.Val478Met	p.V478M	ENST00000288368	NM_024870.2	478	Gtg/Atg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028025	69028025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200550325		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	67	331	0	ENST00000288368.4:c.3184C>T	p.Arg1062Cys	p.R1062C	ENST00000288368	NM_024870.2	1062	Cgt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031691	69031691	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748595305		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	85	242	0	ENST00000288368.4:c.3446G>A	p.Arg1149His	p.R1149H	ENST00000288368	NM_024870.2	1149	cGc/cAc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117869692	117869692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1337189031		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	36	214	0	ENST00000297338.2:c.502C>T	p.Arg168Cys	p.R168C	ENST00000297338	NM_006265.2	168	Cgt/Tgt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737110	145737110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	180	671	0	ENST00000428558.2:c.3456G>T	p.Glu1152Asp	p.E1152D	ENST00000428558	NM_004260.3	1152	gaG/gaT																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739026	145739026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781121286		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	81	531	0	ENST00000428558.2:c.2129G>A	p.Arg710His	p.R710H	ENST00000428558	NM_004260.3	710	cGc/cAc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741761	145741761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs540719285		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	141	574	0	ENST00000428558.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000428558	NM_004260.3	248	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341839	8341839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	84	405	0	ENST00000356435.5:c.4801C>A	p.Gln1601Lys	p.Q1601K	ENST00000356435		1601	Caa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484181	8484181	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1025234387		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	95	375	0	ENST00000356435.5:c.3351G>T	p.Lys1117Asn	p.K1117N	ENST00000356435		1117	aaG/aaT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507344	8507344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs573381420		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	102	272	0	ENST00000356435.5:c.1634C>T	p.Ala545Val	p.A545V	ENST00000356435		545	gCc/gTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98215787	98215787	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376844749		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	129	446	1	ENST00000331920.6:c.3422C>T	p.Ala1141Val	p.A1141V	ENST00000331920	NM_000264.3	1141	gCg/gTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133755914	133755914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1476512998		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	124	457	0	ENST00000318560.5:c.1541G>A	p.Gly514Asp	p.G514D	ENST00000318560	NM_005157.4	514	gGc/gAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399159	139399159	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1456612268		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	129	584	0	ENST00000277541.6:c.4984C>T	p.Arg1662Trp	p.R1662W	ENST00000277541	NM_017617.3	1662	Cgg/Tgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409968	139409968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372771179		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	175	692	0	ENST00000277541.6:c.1870G>A	p.Ala624Thr	p.A624T	ENST00000277541	NM_017617.3	624	Gcc/Acc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53230758	53230758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782683492		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	164	511	0	ENST00000375401.3:c.2035C>T	p.Arg679Cys	p.R679C	ENST00000375401	NM_004187.3	679	Cgt/Tgt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247490	53247490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782091438		P-0044790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	97	436	0	ENST00000375401.3:c.319C>T	p.Arg107Trp	p.R107W	ENST00000375401	NM_004187.3	107	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0044792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	1230	600	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0044792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	255	697	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056238	27056238	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	575	590	0	ENST00000324856.7:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000324856	NM_006015.4	412	Cag/Tag																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185165579	185165580	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TTAAAGTG			P-0044792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	28	237	0	ENST00000265026.3:c.856_857insAAAGTGTT	p.Leu286Ter	p.L286*	ENST00000265026	NM_004721.4	285	gtt/gtTTAAAGTGt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0044793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	109	494	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0044793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	230	801	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0044809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	205	676	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	77	320	0				ENST00000310581	NM_198253.2																																																																																
CDC73	79577	MSKCC	GRCh37	1	193107236	193107236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	25	265	0	ENST00000367435.3:c.445G>C	p.Asp149His	p.D149H	ENST00000367435	NM_024529.4	149	Gat/Cat																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63699984	63699984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	42	286	0	ENST00000279873.7:c.319G>C	p.Glu107Gln	p.E107Q	ENST00000279873	NM_032199.2	107	Gaa/Caa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94922999	94922999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	38	458	1	ENST00000536441.1:c.469G>A	p.Glu157Lys	p.E157K	ENST00000536441	NM_144665.3	157	Gaa/Aaa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504561	103504561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774884182		P-0044809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	34	333	0	ENST00000355739.4:c.182G>A	p.Arg61Gln	p.R61Q	ENST00000355739	NM_000123.3	61	cGg/cAg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40861904	40861904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	56	560	0	ENST00000428826.2:c.1453G>A	p.Glu485Lys	p.E485K	ENST00000428826		485	Gag/Aag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226510	41226510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	51	433	0	ENST00000357654.3:c.4513G>T	p.Asp1505Tyr	p.D1505Y	ENST00000357654	NM_007294.3	1505	Gat/Tat																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761283	59761283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776002434		P-0044809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	71	597	1	ENST00000259008.2:c.3124G>A	p.Glu1042Lys	p.E1042K	ENST00000259008	NM_032043.2	1042	Gaa/Aaa																																																																														
KIT	3815	MSKCC	GRCh37	4	55598102	55598102	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	58	548	0	ENST00000288135.5:c.2299G>T	p.Glu767Ter	p.E767*	ENST00000288135	NM_000222.2	767	Gaa/Taa																																																																														
MET	4233	MSKCC	GRCh37	7	116380914	116380914	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	161	530	0	ENST00000397752.3:c.1536G>C	p.Lys512Asn	p.K512N	ENST00000397752	NM_000245.2	512	aaG/aaC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	107	472	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	135	323	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	87	314	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	453	834	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
STAG2	10735	MSKCC	GRCh37	X	123229240	123229240	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs867285087		P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	89	157	0	ENST00000218089.9:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000218089	NM_001042749.1	1242	Cga/Tga																																																																														
TET2	54790	MSKCC	GRCh37	4	106196999	106196999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	140	268	0	ENST00000380013.4:c.5332C>T	p.His1778Tyr	p.H1778Y	ENST00000380013	NM_001127208.2	1778	Cat/Tat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	10	124	0	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295176	1295176	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1475402448		P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	151	230	0				ENST00000310581	NM_198253.2																																																																																
BRCA2	675	MSKCC	GRCh37	13	32932053	32932053	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1135401919		P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	147	251	0	ENST00000380152.3:c.7792G>T	p.Glu2598Ter	p.E2598*	ENST00000380152		2598	Gaa/Taa																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872582	136872582	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	77	336	0	ENST00000241393.3:c.916G>T	p.Gly306Ter	p.G306*	ENST00000241393	NM_003467.2	306	Gga/Tga																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55140790	55140805	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGTAGATATTTTCT	CAGGTAGATATTTTCT	-			P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	66	371	0	ENST00000257290.5:c.1653_1653+15del		p.X551_splice	ENST00000257290	NM_006206.4	551																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170148	32170148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	131	921	1	ENST00000375023.3:c.3460G>A	p.Gly1154Ser	p.G1154S	ENST00000375023	NM_004557.3	1154	Ggc/Agc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099925	157099925	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	155	453	0	ENST00000346085.5:c.862G>C	p.Glu288Gln	p.E288Q	ENST00000346085	NM_020732.3	288	Gaa/Caa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5050770	5050770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	71	390	0	ENST00000381652.3:c.553G>C	p.Asp185His	p.D185H	ENST00000381652	NM_004972.3	185	Gat/Cat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923011	44923011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	283	288	0	ENST00000377967.4:c.1872del	p.Thr625ProfsTer66	p.T625Pfs*66	ENST00000377967	NM_021140.2	624	ctG/ct																																																																														
ARAF	369	MSKCC	GRCh37	X	47430793	47430793	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	132	392	0	ENST00000377045.4:c.1758G>C	p.Leu586Phe	p.L586F	ENST00000377045	NM_001654.4	586	ttG/ttC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0044860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	279	523	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0044860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	73	277	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
XPO1	7514	MSKCC	GRCh37	2	61712995	61712995	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1460782822		P-0044860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	40	375	0	ENST00000401558.2:c.2416A>G	p.Ile806Val	p.I806V	ENST00000401558	NM_003400.3	806	Ata/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0044907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	178	637	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0044907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	150	496	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478902	56478902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	295	826	0	ENST00000267101.3:c.358A>G	p.Met120Val	p.M120V	ENST00000267101	NM_001982.3	120	Atg/Gtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928076	178928084	+	inframe_deletion	In_Frame_Del	DEL	TTAGAAGAT	TTAGAAGAT	-			P-0044907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	141	515	0	ENST00000263967.3:c.1356_1364del	p.Glu453_Leu455del	p.E453_L455del	ENST00000263967	NM_006218.2	452	TTAGAAGAT/-																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514729	103514729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	61	444	0	ENST00000355739.4:c.1230G>T	p.Gln410His	p.Q410H	ENST00000355739	NM_000123.3	410	caG/caT																																																																														
RAD51	5888	MSKCC	GRCh37	15	41021765	41021765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	177	473	0	ENST00000267868.3:c.707G>A	p.Gly236Asp	p.G236D	ENST00000267868	NM_002875.4	236	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	113	578	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	161	497	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252866	36252866	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	197	299	0	ENST00000300305.3:c.496C>G	p.Arg166Gly	p.R166G	ENST00000300305		166	Cga/Gga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245858	46245858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	103	343	0	ENST00000334344.6:c.3952C>T	p.Gln1318Ter	p.Q1318*	ENST00000334344	NM_152641.2	1318	Cag/Tag																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649679	48649679	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150572851		P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	434	789	1	ENST00000376670.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000376670	NM_002049.3	55	Gct/Act																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245027	46245027	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	181	563	0	ENST00000334344.6:c.3121C>T	p.Gln1041Ter	p.Q1041*	ENST00000334344	NM_152641.2	1041	Caa/Taa																																																																														
ABL1	25	MSKCC	GRCh37	9	133747537	133747537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	128	419	0	ENST00000318560.5:c.844G>C	p.Glu282Gln	p.E282Q	ENST00000318560	NM_005157.4	282	Gag/Cag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041361	47041361	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782440714		P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	256	720	0	ENST00000329236.7:c.1471G>A	p.Val491Ile	p.V491I	ENST00000329236	NM_001204466.1	491	Gtc/Atc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532590	187532590	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	178	329	0	ENST00000441802.2:c.9803C>G	p.Ser3268Ter	p.S3268*	ENST00000441802	NM_005245.3	3268	tCa/tGa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245765	46245765	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	116	413	2	ENST00000334344.6:c.3859G>T	p.Glu1287Ter	p.E1287*	ENST00000334344	NM_152641.2	1287	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445485	49445485	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371225040		P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	305	866	0	ENST00000301067.7:c.1981C>T	p.Arg661Cys	p.R661C	ENST00000301067	NM_003482.3	661	Cgc/Tgc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs149680468		P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	78	303	0	ENST00000281708.4:c.1513C>A	p.Arg505Ser	p.R505S	ENST00000281708	NM_033632.3	505	Cgc/Agc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38991161	38991161	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1346388651		P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	109	318	0	ENST00000357387.3:c.473C>T	p.Ala158Val	p.A158V	ENST00000357387	NM_152756.3	158	gCt/gTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779014	3779014	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765101871		P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	327	627	0	ENST00000262367.5:c.6034G>A	p.Val2012Ile	p.V2012I	ENST00000262367	NM_004380.2	2012	Gtc/Atc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244257	46244257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	113	365	0	ENST00000334344.6:c.2351C>G	p.Pro784Arg	p.P784R	ENST00000334344	NM_152641.2	784	cCt/cGt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245865	46245865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	95	336	0	ENST00000334344.6:c.3959C>T	p.Ser1320Leu	p.S1320L	ENST00000334344	NM_152641.2	1320	tCa/tTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245907	46245907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	79	316	0	ENST00000334344.6:c.4001G>A	p.Gly1334Glu	p.G1334E	ENST00000334344	NM_152641.2	1334	gGa/gAa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2103437	2103437	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	464	824	0	ENST00000219476.3:c.320C>G	p.Ala107Gly	p.A107G	ENST00000219476	NM_000548.3	107	gCc/gGc																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733038	74733038	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1686	113	546	0	ENST00000359995.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000359995	NM_001195427.1	69	Gag/Tag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266845	18266845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	182	493	0	ENST00000222254.8:c.156G>T	p.Gln52His	p.Q52H	ENST00000222254	NM_005027.3	52	caG/caT																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982502	25982502	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	171	222	0	ENST00000435504.4:c.788G>C	p.Arg263Thr	p.R263T	ENST00000435504		263	aGa/aCa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52692235	52692235	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	79	317	0	ENST00000394830.3:c.625C>T	p.Gln209Ter	p.Q209*	ENST00000394830	NM_018313.4	209	Cag/Tag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054886	5054886	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	147	252	0	ENST00000381652.3:c.936+2T>C		p.X312_splice	ENST00000381652	NM_004972.3	312																																																																															
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994276	21994276	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	46	551	0				ENST00000428597																																																																																	
CDKN2B-AS1	100048912	MSKCC	GRCh37	9	21994276	21994276	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	46	551	0				ENST00000428597																																																																																	
BCOR	54880	MSKCC	GRCh37	X	39932077	39932077	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	402	721	0	ENST00000378444.4:c.2522C>G	p.Ser841Ter	p.S841*	ENST00000378444	NM_001123385.1	841	tCa/tGa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575098	48575113	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTGGAGGTGGCCTG	CTCTGGAGGTGGCCTG	-			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	65	285	0	ENST00000342988.3:c.292_307del	p.Leu98IlefsTer7	p.L98Ifs*7	ENST00000342988	NM_005359.5	98	CTCTGGAGGTGGCCTGat/at																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575122	48575122	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	65	273	0	ENST00000342988.3:c.320del	p.Asn107MetfsTer3	p.N107Mfs*3	ENST00000342988	NM_005359.5	106	Aaa/aa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453145	140453146	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA	rs121913368		P-0044915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	318	371	1	ENST00000288602.6:c.1789_1790delinsTC	p.Leu597Ser	p.L597S	ENST00000288602	NM_004333.4	597	CTa/TCa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307003	65307003	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	48	363	0	ENST00000342505.4:c.2574A>C	p.Glu858Asp	p.E858D	ENST00000342505	NM_002227.2	858	gaA/gaC																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112555	2112555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	80	895	0	ENST00000219476.3:c.1315G>C	p.Asp439His	p.D439H	ENST00000219476	NM_000548.3	439	Gac/Cac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828801	3828801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	249	603	0	ENST00000262367.5:c.1841C>G	p.Pro614Arg	p.P614R	ENST00000262367	NM_004380.2	614	cCa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577541	7577544	+	frameshift_variant	Frame_Shift_Del	DEL	TTCA	TTCA	-			P-0044915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	250	769	0	ENST00000269305.4:c.737_740del	p.Met246ThrfsTer98	p.M246Tfs*98	ENST00000269305	NM_001126112.2	246	aTGAAc/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0044957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	825	698	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268760	41268760	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	414	411	0	ENST00000349496.5:c.998A>T	p.Tyr333Phe	p.Y333F	ENST00000349496	NM_001904.3	333	tAc/tTc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716229	52716229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	212	713	0	ENST00000322088.6:c.673G>T	p.Val225Leu	p.V225L	ENST00000322088	NM_014225.5	225	Gtg/Ttg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413274	139413274	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0044957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	498	754	2	ENST00000277541.6:c.868C>T	p.Gln290Ter	p.Q290*	ENST00000277541	NM_017617.3	290	Cag/Tag																																																																														
EP300	2033	MSKCC	GRCh37	22	41545835	41545835	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	325	760	0	ENST00000263253.7:c.2450T>A	p.Ile817Asn	p.I817N	ENST00000263253	NM_001429.3	817	aTt/aAt																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27840078	27840078	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1443072275		P-0044957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	111	221	0	ENST00000328488.2:c.16C>G	p.Gln6Glu	p.Q6E	ENST00000328488	NM_003533.2	6	Caa/Gaa																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519713	137519713	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	258	269	0	ENST00000367739.4:c.925A>G	p.Thr309Ala	p.T309A	ENST00000367739	NM_000416.2	309	Acg/Gcg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157510886	157510886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	449	575	0	ENST00000346085.5:c.3661G>T	p.Gly1221Cys	p.G1221C	ENST00000346085	NM_020732.3	1221	Ggc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	172	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	125	458	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851286	156851286	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745776726		P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	114	773	1	ENST00000524377.1:c.2243G>A	p.Arg748Gln	p.R748Q	ENST00000524377	NM_002529.3	748	cGg/cAg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	172	471	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
EP300	2033	MSKCC	GRCh37	22	41548243	41548243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775368605		P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	106	300	0	ENST00000263253.7:c.3031G>A	p.Glu1011Lys	p.E1011K	ENST00000263253	NM_001429.3	1011	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949076	44949076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	75	246	1	ENST00000377967.4:c.3637C>T	p.Arg1213Ter	p.R1213*	ENST00000377967	NM_021140.2	1213	Cga/Tga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056964	180056964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	116	826	2	ENST00000261937.6:c.655C>A	p.Pro219Thr	p.P219T	ENST00000261937	NM_182925.4	219	Ccc/Acc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519962		P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	12	343	0	ENST00000342988.3:c.1156G>A	p.Gly386Ser	p.G386S	ENST00000342988	NM_005359.5	386	Ggt/Agt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49423020	49423020	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	36	688	0	ENST00000301067.7:c.14076-1G>T		p.X4692_splice	ENST00000301067	NM_003482.3	4692																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492800	56492800	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	101	552	0	ENST00000407977.2:c.139A>T	p.Ile47Phe	p.I47F	ENST00000407977		47	Att/Ttt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936096	+	missense_variant	Missense_Mutation	DNP	AG	AG	GT			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	21	638	0	ENST00000263967.3:c.1637_1638delinsGT	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAG/cGT																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249341	110249341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	398	1067	3	ENST00000374672.4:c.1232C>A	p.Ser411Tyr	p.S411Y	ENST00000374672	NM_004235.4	411	tCc/tAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942658	44942768	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTATTTGTAGCAGAGTTTCACTTTTGATGTGTTATTTTATTGCAGGTGGAAGTTGCAGCTACATGAGCTGACTAAACTTCCTGCTTTTGTGCGTGTCGTATCAGCAGGA	AGGTATTTGTAGCAGAGTTTCACTTTTGATGTGTTATTTTATTGCAGGTGGAAGTTGCAGCTACATGAGCTGACTAAACTTCCTGCTTTTGTGCGTGTCGTATCAGCAGGA	-			P-0044971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	10	130	0	ENST00000377967.4:c.3285-46_3349del		p.X1095_splice	ENST00000377967	NM_021140.2	1095																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	28	280	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0044991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	16	330	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15311619	15311621	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-	rs772632118		P-0044991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	11	117	1	ENST00000263388.2:c.96_98del	p.Leu33del	p.L33del	ENST00000263388	NM_000435.2	32	ctGCTa/cta																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	43	475	7	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	44	831	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	30	419	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	34	347	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	65	348	3	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	51	768	1	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																														
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	43	255	2	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370841	55370841	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759612481		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	42	632	0	ENST00000297316.4:c.143C>T	p.Ala48Val	p.A48V	ENST00000297316	NM_022454.3	48	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	66	380	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222934	5222934	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768350891		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	94	762	0	ENST00000357368.4:c.2869G>A	p.Glu957Lys	p.E957K	ENST00000357368	NM_002850.3	957	Gag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116339744	116339746	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs764811491		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	57	368	0	ENST00000397752.3:c.611_613del	p.Ser204del	p.S204del	ENST00000397752	NM_000245.2	202	aaTTCt/aat																																																																														
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	54	568	1	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	82	490	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	123	624	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	46	692	3	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319959	8319959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745582718		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	18	220	0	ENST00000356435.5:c.5542G>A	p.Val1848Ile	p.V1848I	ENST00000356435		1848	Gtt/Att																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55130043	55130043	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774431464		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	101	646	2	ENST00000257290.5:c.577G>A	p.Val193Ile	p.V193I	ENST00000257290	NM_006206.4	193	Gtc/Atc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	31	580	0	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
APC	324	MSKCC	GRCh37	5	112164664	112164664	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	44	238	0	ENST00000257430.4:c.1742del	p.Lys581ArgfsTer9	p.K581Rfs*9	ENST00000257430	NM_000038.5	580	Aaa/aa																																																																														
EP300	2033	MSKCC	GRCh37	22	41573977	41573977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201569846		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	49	666	2	ENST00000263253.7:c.6262C>T	p.Arg2088Trp	p.R2088W	ENST00000263253	NM_001429.3	2088	Cgg/Tgg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	61	861	5	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922974	44922974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs973676174		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	41	642	0	ENST00000377967.4:c.1835G>A	p.Arg612Gln	p.R612Q	ENST00000377967	NM_021140.2	612	cGa/cAa																																																																														
ERF	2077	MSKCC	GRCh37	19	42752786	42752786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762382429		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	54	969	1	ENST00000222329.4:c.1478G>A	p.Arg493His	p.R493H	ENST00000222329	NM_006494.2	493	cGc/cAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163855	32163855	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	93	559	0	ENST00000375023.3:c.5371del	p.Ala1791GlnfsTer11	p.A1791Qfs*11	ENST00000375023	NM_004557.3	1791	Gca/ca																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132515	11132515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	105	828	0	ENST00000344626.4:c.2731G>A	p.Gly911Ser	p.G911S	ENST00000344626	NM_003072.3	911	Ggc/Agc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15383885	15383885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	31	496	0	ENST00000263377.2:c.26C>T	p.Thr9Met	p.T9M	ENST00000263377	NM_058243.2	9	aCg/aTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29667607	29667607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781428		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	41	565	1	ENST00000358273.4:c.7006G>A	p.Ala2336Thr	p.A2336T	ENST00000358273	NM_001042492.2	2336	Gca/Aca																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39322556	39322556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761415462		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	47	430	0	ENST00000373001.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000373001	NM_022157.3	146	Gca/Aca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973765	15973765	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	52	458	0	ENST00000268712.3:c.4227del	p.Pro1410LeufsTer18	p.P1410Lfs*18	ENST00000268712	NM_006311.3	1409	ggG/gg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102199631	102199631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	25	275	0	ENST00000263464.3:c.1036C>A	p.Leu346Ile	p.L346I	ENST00000263464	NM_001165.4	346	Cta/Ata																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs112445441		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	10	398	0	ENST00000256078.4:c.38G>C	p.Gly13Ala	p.G13A	ENST00000256078	NM_033360.2	13	gGc/gCc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112302	115112302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	12	214	1	ENST00000257566.3:c.1438G>A	p.Ala480Thr	p.A480T	ENST00000257566	NM_016569.3	480	Gcg/Acg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348051	89348051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	63	1030	1	ENST00000301030.4:c.4899G>T	p.Lys1633Asn	p.K1633N	ENST00000301030	NM_001256183.1	1633	aaG/aaT																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805913	89805913	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	44	727	1	ENST00000389301.3:c.3983C>A	p.Thr1328Asn	p.T1328N	ENST00000389301	NM_000135.2	1328	aCc/aAc																																																																														
CALR	811	MSKCC	GRCh37	19	13051678	13051678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1026947469		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	75	562	0	ENST00000316448.5:c.937G>A	p.Val313Met	p.V313M	ENST00000316448	NM_004343.3	313	Gtg/Atg																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313353	30313353	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	33	597	0	ENST00000262643.3:c.953G>T	p.Gly318Val	p.G318V	ENST00000262643	NM_001238.2	318	gGg/gTg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715991	52715991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	98	688	1	ENST00000322088.6:c.556G>T	p.Ala186Ser	p.A186S	ENST00000322088	NM_014225.5	186	Gcc/Tcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542843	187542843	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	27	416	0	ENST00000441802.2:c.4897T>C	p.Tyr1633His	p.Y1633H	ENST00000441802	NM_005245.3	1633	Tat/Cat																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970922	79970922	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs71539687		P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	119	645	0	ENST00000265081.6:c.1148A>G	p.Lys383Arg	p.K383R	ENST00000265081	NM_002439.4	383	aAg/aGg																																																																														
APC	324	MSKCC	GRCh37	5	112174965	112174965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	30	214	1	ENST00000257430.4:c.3674C>T	p.Ala1225Val	p.A1225V	ENST00000257430	NM_000038.5	1225	gCc/gTc																																																																														
SESN1	27244	MSKCC	GRCh37	6	109415033	109415033	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	35	522	0	ENST00000436639.2:c.244A>T	p.Arg82Ter	p.R82*	ENST00000436639	NM_014454.2	82	Aga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509841	106509841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	84	713	0	ENST00000359195.3:c.1835C>T	p.Ala612Val	p.A612V	ENST00000359195	NM_002649.2	612	gCc/gTc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38153335	38153338	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	33	570	0	ENST00000317025.8:c.2891_2894del	p.Val964GlyfsTer22	p.V964Gfs*22	ENST00000317025	NM_023034.1	964	gTTTGg/gg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566347	141566347	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	26	404	0	ENST00000220592.5:c.1065del	p.Lys355AsnfsTer2	p.K355Nfs*2	ENST00000220592	NM_012154.3	355	aaA/aa																																																																														
APC	324	MSKCC	GRCh37	5	112164566	112164566	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	18	223	0	ENST00000257430.4:c.1643del	p.Leu548Ter	p.L548*	ENST00000257430	NM_000038.5	547	gTt/gt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982453	25982453	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	166	350	0	ENST00000435504.4:c.837del	p.Asn280IlefsTer7	p.N280Ifs*7	ENST00000435504		279	gtT/gt																																																																														
MGA	23269	MSKCC	GRCh37	15	41961687	41961687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	126	451	0	ENST00000219905.7:c.595C>T	p.Arg199Cys	p.R199C	ENST00000219905	NM_001164273.1	199	Cgt/Tgt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403570	138403570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	202	660	0	ENST00000289153.2:c.2212G>A	p.Gly738Arg	p.G738R	ENST00000289153	NM_006219.2	738	Ggg/Agg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134660	41134660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	120	384	0	ENST00000379561.5:c.968C>G	p.Thr323Ser	p.T323S	ENST00000379561	NM_002015.3	323	aCt/aGt																																																																														
B2M	567	MSKCC	GRCh37	15	45007830	45007830	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	99	431	0	ENST00000558401.1:c.277del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	93	Act/ct																																																																														
FANCA	2175	MSKCC	GRCh37	16	89849475	89849475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	179	702	0	ENST00000389301.3:c.1506G>C	p.Lys502Asn	p.K502N	ENST00000389301	NM_000135.2	502	aaG/aaC																																																																														
IDH1	3417	MSKCC	GRCh37	2	209101895	209101895	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0046216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	90	287	0	ENST00000345146.2:c.1155-2A>C		p.X385_splice	ENST00000345146	NM_005896.2	385																																																																															
VHL	7428	MSKCC	GRCh37	3	10188212	10188213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCAGAGATGCAGGGACACACGATGGGCTTCTGGTTAACCAAACTGAAATGTG			P-0046216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	88	592	0	ENST00000256474.2:c.402_403insATGTGTCAGAGATGCAGGGACACACGATGGGCTTCTGGTTAACCAAACTGAA	p.Leu135MetfsTer14	p.L135Mfs*14	ENST00000256474	NM_000551.3	119	ttc/tTCAGAGATGCAGGGACACACGATGGGCTTCTGGTTAACCAAACTGAAATGTGtc																																																																														
RHOA	387	MSKCC	GRCh37	3	49400043	49400043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	150	551	0	ENST00000418115.1:c.294G>T	p.Lys98Asn	p.K98N	ENST00000418115	NM_001664.2	98	aaG/aaT																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52692304	52692304	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	130	432	0	ENST00000394830.3:c.556del	p.Leu186TrpfsTer8	p.L186Wfs*8	ENST00000394830	NM_018313.4	186	Ctg/tg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138407718	138407718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0046216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	99	306	0	ENST00000289153.2:c.2135A>G	p.Gln712Arg	p.Q712R	ENST00000289153	NM_006219.2	712	cAg/cGg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610564	10610564	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	75	1206	0	ENST00000171111.5:c.146A>G	p.Asn49Ser	p.N49S	ENST00000171111	NM_203500.1	49	aAc/aGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	78	202	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0047087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	304	785	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
REL	5966	MSKCC	GRCh37	2	61149237	61149237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1233682212		P-0049133-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	59	349	0	ENST00000295025.8:c.1427C>T	p.Ser476Phe	p.S476F	ENST00000295025	NM_002908.2	476	tCc/tTc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591291	67591291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049133-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	67	325	0	ENST00000274335.5:c.1789T>C	p.Trp597Arg	p.W597R	ENST00000274335		597	Tgg/Cgg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25458622	25458622	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049133-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	61	421	0	ENST00000264709.3:c.2551T>G	p.Phe851Val	p.F851V	ENST00000264709	NM_175629.2	851	Ttc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	304	574	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225940	2225940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	133	708	1	ENST00000326181.6:c.1732G>A	p.Glu578Lys	p.E578K	ENST00000326181	NM_032271.2	578	Gag/Aag																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477184	67477184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1320208623		P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	84	466	1	ENST00000327367.4:c.991G>A	p.Val331Ile	p.V331I	ENST00000327367	NM_005902.3	331	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	159	328	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35861023	35861023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138482569		P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	85	343	0	ENST00000303115.3:c.152C>T	p.Ser51Leu	p.S51L	ENST00000303115	NM_002185.3	51	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143976	11143976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	134	513	0	ENST00000344626.4:c.3557C>T	p.Ala1186Val	p.A1186V	ENST00000344626	NM_003072.3	1186	gCg/gTg																																																																														
JUN	3725	MSKCC	GRCh37	1	59247964	59247964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	103	612	0	ENST00000371222.2:c.779T>C	p.Met260Thr	p.M260T	ENST00000371222	NM_002228.3	260	aTg/aCg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0000196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	543	472	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	187	349	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161222	56161222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1038	274	759	0	ENST00000399503.3:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000399503	NM_005921.1	364	cGg/cAg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161259	56161259	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			871	242	659	0	ENST00000399503.3:c.1128G>A	p.Trp376Ter	p.W376*	ENST00000399503	NM_005921.1	376	tgG/tgA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32903618	32903618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660484		P-0000196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1063	70	739	0	ENST00000380152.3:c.670G>A	p.Asp224Asn	p.D224N	ENST00000380152		224	Gat/Aat																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619282	37619283	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	115	311	0	ENST00000447079.4:c.959dup	p.Ser320ArgfsTer31	p.S320Rfs*31	ENST00000447079	NM_015083.1	320	agc/aGgc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252988	36252988	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	164	360	0	ENST00000300305.3:c.374del	p.Pro125GlnfsTer8	p.P125Qfs*8	ENST00000300305		125	cCa/ca																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696449	47696449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000505-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	235	551	0	ENST00000347630.2:c.374T>G	p.Phe125Cys	p.F125C	ENST00000347630	NM_001007230.1	125	tTt/tGt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225400279	225400279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000505-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	118	297	0	ENST00000264414.4:c.344C>G	p.Ala115Gly	p.A115G	ENST00000264414	NM_003590.4	115	gCt/gGt																																																																														
ATR	545	MSKCC	GRCh37	3	142177822	142177822	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000505-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	130	279	0	ENST00000350721.4:c.7481A>C	p.Asp2494Ala	p.D2494A	ENST00000350721	NM_001184.3	2494	gAt/gCt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627337	37627340	+	frameshift_variant	Frame_Shift_Del	DEL	AAGG	AAGG	-			P-0000505-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	517	536	0	ENST00000447079.4:c.1253_1256del	p.Lys418SerfsTer17	p.K418Sfs*17	ENST00000447079	NM_015083.1	418	AAGGag/ag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552648	18552648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000505-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	122	672	0	ENST00000266497.5:c.2059G>A	p.Glu687Lys	p.E687K	ENST00000266497		687	Gaa/Aaa																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023196	33023196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000505-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	82	496	0	ENST00000300177.4:c.305C>T	p.Thr102Ile	p.T102I	ENST00000300177	NM_001191322.1	102	aCc/aTc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78923265	78923265	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000505-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	229	547	0	ENST00000306801.3:c.3288G>A	p.Trp1096Ter	p.W1096*	ENST00000306801	NM_020761.2	1096	tgG/tgA																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419932	152419932	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			521	44	548	0	ENST00000206249.3:c.1619T>A	p.Leu540Gln	p.L540Q	ENST00000206249	NM_000125.3	540	cTg/cAg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196056	67196056	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1334740541		P-0001504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1249	102	574	0	ENST00000312629.5:c.40G>A	p.Gly14Ser	p.G14S	ENST00000312629	NM_003952.2	14	Ggc/Agc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0003166-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			610	181	329	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29679366	29679366	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs866445127		P-0003166-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			634	169	446	0	ENST00000358273.4:c.7549C>T	p.Arg2517Ter	p.R2517*	ENST00000358273	NM_001042492.2	2517	Cga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023565	31023565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	174	404	0	ENST00000375687.4:c.3050A>G	p.Asp1017Gly	p.D1017G	ENST00000375687	NM_015338.5	1017	gAc/gGc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937111	76937111	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	204	680	0	ENST00000373344.5:c.3637C>T	p.Gln1213Ter	p.Q1213*	ENST00000373344	NM_000489.3	1213	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	26	515	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0004322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	25	645	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372989163		P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	578	967	0	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	278	940	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	571	1073	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	196	937	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
HGF	3082	MSKCC	GRCh37	7	81381529	81381529	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	469	1086	0	ENST00000222390.5:c.532C>T	p.Arg178Ter	p.R178*	ENST00000222390	NM_000601.4	178	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	476	1247	1	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131418	17131418	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751171641		P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	310	642	0	ENST00000285071.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000285071	NM_144997.5	12	Gag/Aag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	274	573	1	ENST00000342988.3:c.1256G>T	p.Gly419Val	p.G419V	ENST00000342988	NM_005359.5	419	gGg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112173639	112173652	+	frameshift_variant	Frame_Shift_Del	DEL	CATCTCATCGTAGT	CATCTCATCGTAGT	-			P-0004697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	306	837	0	ENST00000257430.4:c.2348_2361del	p.Ala783GlufsTer11	p.A783Efs*11	ENST00000257430	NM_000038.5	783	gCATCTCATCGTAGT/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	424	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PARK2	0	MSKCC	GRCh37	6	162622169	162622169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	60	317	0	ENST00000366898.1:c.528G>C	p.Leu176Phe	p.L176F	ENST00000366898	NM_004562.2	176	ttG/ttC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690846	89690846	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	171	230	0	ENST00000371953.3:c.253G>T	p.Val85Phe	p.V85F	ENST00000371953	NM_000314.4	85	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	183	509	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	258	381	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
NBN	4683	MSKCC	GRCh37	8	90949272	90949272	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	382	398	0	ENST00000265433.3:c.2216T>C	p.Leu739Pro	p.L739P	ENST00000265433	NM_002485.4	739	cTt/cCt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479829	67479829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	343	507	0	ENST00000327367.4:c.1136G>A	p.Gly379Asp	p.G379D	ENST00000327367	NM_005902.3	379	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs786201057		P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	170	425	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	110	374	1	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426120	47426120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	390	266	0	ENST00000377045.4:c.640T>C	p.Ser214Pro	p.S214P	ENST00000377045	NM_001654.4	214	Tcc/Ccc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225370815	225370815	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	233	227	0	ENST00000264414.4:c.1064T>C	p.Phe355Ser	p.F355S	ENST00000264414	NM_003590.4	355	tTc/tCc																																																																														
CBL	867	MSKCC	GRCh37	11	119170363	119170363	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	59	262	0	ENST00000264033.4:c.2593A>G	p.Met865Val	p.M865V	ENST00000264033	NM_005188.3	865	Atg/Gtg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720779	89720780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	23	66	0	ENST00000371953.3:c.932dup	p.Asn311LysfsTer2	p.N311Kfs*2	ENST00000371953	NM_000314.4	310	-/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0008027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	158	202	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73775025	73775025	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	33	203	0	ENST00000254810.4:c.148C>T	p.Arg50Ter	p.R50*	ENST00000254810	NM_005324.3	50	Cga/Tga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061213	38061213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	55	228	0	ENST00000250448.2:c.776A>G	p.Tyr259Cys	p.Y259C	ENST00000250448	NM_004496.3	259	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	119	550	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
XIAP	331	MSKCC	GRCh37	X	123020377	123020377	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	50	374	0	ENST00000355640.3:c.865T>C	p.Phe289Leu	p.F289L	ENST00000355640		289	Ttt/Ctt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576916	7576917	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	50	478	0	ENST00000269305.4:c.929_930insG	p.Asn310LysfsTer27	p.N310Kfs*27	ENST00000269305	NM_001126112.2	310	aac/aaGc																																																																														
B2M	567	MSKCC	GRCh37	15	45007635	45007635	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008404-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			116	308	325	0	ENST00000558401.1:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000558401	NM_004048.2	28	Cag/Tag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs869025608		P-0008404-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			698	452	486	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008404-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			487	512	393	0	ENST00000263967.3:c.1033A>T	p.Asn345Tyr	p.N345Y	ENST00000263967	NM_006218.2	345	Aat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008404-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			173	359	368	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																														
BCL6	604	MSKCC	GRCh37	3	187449671	187449671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008404-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			662	867	461	0	ENST00000232014.4:c.209G>A	p.Ser70Asn	p.S70N	ENST00000232014	NM_001130845.1	70	aGt/aAt																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202292	138202292	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008404-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			137	365	364	0	ENST00000237289.4:c.2209C>T	p.Gln737Ter	p.Q737*	ENST00000237289	NM_001270507.1	737	Cag/Tag																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271208	38271208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765900637		P-0008404-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			312	233	235	1	ENST00000425967.3:c.2500G>A	p.Glu834Lys	p.E834K	ENST00000425967	NM_001174067.1	834	Gag/Aag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499623	18499623	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008404-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			804	519	589	2	ENST00000266497.5:c.1478T>A	p.Leu493Gln	p.L493Q	ENST00000266497		493	cTa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133202293	133202293	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1220509815		P-0008404-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			133	470	381	0	ENST00000320574.5:c.6595A>T	p.Ile2199Phe	p.I2199F	ENST00000320574	NM_006231.2	2199	Atc/Ttc																																																																														
BLM	641	MSKCC	GRCh37	15	91337474	91337474	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008404-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	400	541	0	ENST00000355112.3:c.3097A>G	p.Ile1033Val	p.I1033V	ENST00000355112	NM_000057.2	1033	Ata/Gta																																																																														
CCNE1	898	MSKCC	GRCh37	19	30314616	30314616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008404-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			168	478	506	0	ENST00000262643.3:c.1165C>T	p.Leu389Phe	p.L389F	ENST00000262643	NM_001238.2	389	Ctc/Ttc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602571	10602583	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAAGTAGCCGC	CGGAAGTAGCCGC	-			P-0008404-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			243	200	330	0	ENST00000171111.5:c.995_1007del	p.Gly332AspfsTer64	p.G332Dfs*64	ENST00000171111	NM_203500.1	332	gGCGGCTACTTCCGa/ga																																																																														
STK11	6794	MSKCC	GRCh37	19	1220394	1220394	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008404-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			177	407	439	0	ENST00000326873.7:c.488del	p.Gly163AlafsTer124	p.G163Afs*124	ENST00000326873	NM_000455.4	163	Ggc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	75	499	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0008527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	97	415	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647056	23647056	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	82	595	0	ENST00000261584.4:c.811A>C	p.Ser271Arg	p.S271R	ENST00000261584	NM_024675.3	271	Agt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971202	21971203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	27	107	0	ENST00000304494.5:c.155dup	p.Met52IlefsTer68	p.M52Ifs*68	ENST00000304494	NM_000077.4	52	atg/atTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971202	21971203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	27	107	0	ENST00000304494.5:c.155dup	p.Met52IlefsTer68	p.M52Ifs*68	ENST00000304494	NM_000077.4	52	atg/atTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0013734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	54	462	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0013734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	28	358	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120642	115120642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1375	158	753	1	ENST00000257566.3:c.364G>A	p.Glu122Lys	p.E122K	ENST00000257566	NM_016569.3	122	Gag/Aag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138111	2138111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139779505		P-0013734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	65	539	1	ENST00000219476.3:c.5131G>A	p.Val1711Met	p.V1711M	ENST00000219476	NM_000548.3	1711	Gtg/Atg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683807	117683807	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	42	407	0	ENST00000368508.3:c.3340C>G	p.Gln1114Glu	p.Q1114E	ENST00000368508	NM_002944.2	1114	Caa/Gaa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593618	55593662	+	inframe_deletion	In_Frame_Del	DEL	GAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTT	GAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTT	-			P-0014184-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	179	838	0	ENST00000288135.5:c.1684_1728del	p.Glu562_Leu576del	p.E562_L576del	ENST00000288135	NM_000222.2	562	GAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTT/-																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	216	368	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137854598		P-0014490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	155	326	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137854598		P-0014490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	155	326	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68862159	68862163	+	frameshift_variant	Frame_Shift_Del	DEL	GGACA	GGACA	-			P-0014490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	184	384	0	ENST00000261769.5:c.2247_2251del	p.Asp750ArgfsTer5	p.D750Rfs*5	ENST00000261769	NM_004360.3	749	cgGGACAac/cgac																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160661	56160681	+	inframe_deletion	In_Frame_Del	DEL	TGCGGGCCAGACTGTACTTAC	TGCGGGCCAGACTGTACTTAC	-			P-0014955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	147	556	0	ENST00000399503.3:c.938_958del	p.Arg313_Leu319del	p.R313_L319del	ENST00000399503	NM_005921.1	312	aTGCGGGCCAGACTGTACTTACtg/atg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56183249	56183249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	182	565	0	ENST00000399503.3:c.4159G>C	p.Ala1387Pro	p.A1387P	ENST00000399503	NM_005921.1	1387	Gca/Cca																																																																														
JUN	3725	MSKCC	GRCh37	1	59247810	59247811	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0015298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			840	338	666	0	ENST00000371222.2:c.932_933del	p.Lys311SerfsTer6	p.K311Sfs*6	ENST00000371222	NM_002228.3	311	aAA/a																																																																														
ATM	472	MSKCC	GRCh37	11	108196143	108196143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564652222		P-0015298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	199	490	1	ENST00000278616.4:c.6679C>T	p.Arg2227Cys	p.R2227C	ENST00000278616	NM_000051.3	2227	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			628	163	482	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3790512	3790512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	272	537	0	ENST00000262367.5:c.4021C>T	p.Arg1341Ter	p.R1341*	ENST00000262367	NM_004380.2	1341	Cga/Tga																																																																														
CALR	811	MSKCC	GRCh37	19	13051469	13051469	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	144	395	0	ENST00000316448.5:c.816+1G>A		p.X272_splice	ENST00000316448	NM_004343.3	272																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686326	30686326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	123	367	0	ENST00000359013.4:c.257G>T	p.Cys86Phe	p.C86F	ENST00000359013	NM_001024847.2	86	tGt/tTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391168	89391168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772463834		P-0015298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			740	205	392	0	ENST00000336596.2:c.1234G>A	p.Val412Ile	p.V412I	ENST00000336596	NM_005233.5	412	Gtt/Att																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589251	67589452	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCTCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGTTACGATGTTTAGACAAGATCCTTTTAATACTTAGAAAACATTTGAAGCAGATGAATTACATGTAATCAAGTCTAAAAAACTTGACACTCGTAATTACATAATTGCAATTTTAA	AGCTCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGTTACGATGTTTAGACAAGATCCTTTTAATACTTAGAAAACATTTGAAGCAGATGAATTACATGTAATCAAGTCTAAAAAACTTGACACTCGTAATTACATAATTGCAATTTTAA	-			P-0015298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	90	362	0	ENST00000274335.5:c.1241_1300-83del		p.X414_splice	ENST00000274335		414																																																																															
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0015298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	172	404	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175789	112175789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	134	289	0	ENST00000257430.4:c.4501del	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1500	Ttt/tt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508425	106508425	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754761135		P-0015298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	103	194	0	ENST00000359195.3:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000359195	NM_002649.2	140	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140501350	140501350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906660		P-0015298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	103	330	0	ENST00000288602.6:c.722C>T	p.Thr241Met	p.T241M	ENST00000288602	NM_004333.4	241	aCg/aTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0016848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	230	795	0	ENST00000288135.5:c.1504_1509dup	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	31	547	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	62	854	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893810		P-0017171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	28	390	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs775623976		P-0017171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	25	538	0	ENST00000335508.6:c.1873C>G	p.Arg625Gly	p.R625G	ENST00000335508	NM_012433.2	625	Cgt/Ggt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448393	56448393	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	67	709	0	ENST00000407977.2:c.254C>T	p.Ser85Phe	p.S85F	ENST00000407977		85	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	368	527	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	51	561	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	41	744	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	316	481	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	444	504	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	23	502	1	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112175438	112175439	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	139	267	0	ENST00000257430.4:c.4147_4148del	p.Met1383ValfsTer2	p.M1383Vfs*2	ENST00000257430	NM_000038.5	1383	ATg/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023447	27023447	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	335	547	1	ENST00000324856.7:c.553C>T	p.Gln185Ter	p.Q185*	ENST00000324856	NM_006015.4	185	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577519	7577519	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	131	531	0	ENST00000269305.4:c.762del	p.Ile255SerfsTer90	p.I255Sfs*90	ENST00000269305	NM_001126112.2	254	atC/at																																																																														
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	228	326	0	ENST00000257430.4:c.1312+1G>T		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871297	151871297	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	661	469	0	ENST00000262189.6:c.9293A>C	p.Lys3098Thr	p.K3098T	ENST00000262189	NM_170606.2	3098	aAa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	168	547	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	168	489	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101608	27101609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGC			P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	129	536	0	ENST00000324856.7:c.4892_4895dup	p.Pro1633AlafsTer16	p.P1633Afs*16	ENST00000324856	NM_006015.4	1630	-/CAGC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575169	48575169	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	51	206	1	ENST00000342988.3:c.366del	p.Lys122AsnfsTer7	p.K122Nfs*7	ENST00000342988	NM_005359.5	121	ttA/tt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068123	94068123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778426683		P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	56	253	0	ENST00000369303.4:c.839G>A	p.Gly280Asp	p.G280D	ENST00000369303	NM_004440.3	280	gGc/gAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681074	117681077	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-	rs779372215		P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	113	422	0	ENST00000368508.3:c.3543_3546del	p.Arg1182LeufsTer60	p.R1182Lfs*60	ENST00000368508	NM_002944.2	1181	gaAAGA/ga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971089	21971089	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	104	338	0	ENST00000304494.5:c.269del	p.Phe90SerfsTer56	p.F90Sfs*56	ENST00000304494	NM_000077.4	90	tTc/tc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971089	21971089	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	104	338	0	ENST00000304494.5:c.269del	p.Phe90SerfsTer56	p.F90Sfs*56	ENST00000304494	NM_000077.4	90	tTc/tc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971089	21971089	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	104	338	0	ENST00000304494.5:c.269del	p.Phe90SerfsTer56	p.F90Sfs*56	ENST00000304494	NM_000077.4	90	tTc/tc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	254	607	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	519	970	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779811318		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	178	675	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609732	81609732	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs754118014		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	271	632	2	ENST00000298171.2:c.1330T>C	p.Tyr444His	p.Y444H	ENST00000298171	NM_000369.2	444	Tac/Cac																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435634	149435634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	95	848	0	ENST00000286301.3:c.2509G>A	p.Asp837Asn	p.D837N	ENST00000286301	NM_005211.3	837	Gac/Aac																																																																														
KDR	3791	MSKCC	GRCh37	4	55961055	55961055	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1229432573		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	56	1013	1	ENST00000263923.4:c.2885G>A	p.Arg962His	p.R962H	ENST00000263923	NM_002253.2	962	cGc/cAc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36945037	36945037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200059719		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	430	911	2	ENST00000361632.4:c.61G>A	p.Gly21Arg	p.G21R	ENST00000361632		21	Gga/Aga																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374942	45374942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	321	702	1	ENST00000262160.6:c.901G>T	p.Gly301Cys	p.G301C	ENST00000262160	NM_005901.5	301	Ggc/Tgc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138456596	138456596	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774144681		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	238	749	0	ENST00000289153.2:c.754G>A	p.Gly252Arg	p.G252R	ENST00000289153	NM_006219.2	252	Ggg/Agg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002939	69002939	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773432628		P-0020771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	163	324	0	ENST00000288368.4:c.2239C>T	p.Arg747Trp	p.R747W	ENST00000288368	NM_024870.2	747	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	119	647	1				ENST00000310581	NM_198253.2																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44929487	44929487	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	156	837	2	ENST00000377967.4:c.2587C>T	p.Gln863Ter	p.Q863*	ENST00000377967	NM_021140.2	863	Cag/Tag																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599255	28599255	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	174	925	0	ENST00000253063.3:c.701C>G	p.Pro234Arg	p.P234R	ENST00000253063	NM_031459.4	234	cCt/cGt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740204	162740204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749040833		P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	182	840	0	ENST00000367921.3:c.1406C>T	p.Ser469Leu	p.S469L	ENST00000367921	NM_006182.2	469	tCg/tTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138140	64138140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	190	856	0	ENST00000334205.4:c.2063C>G	p.Pro688Arg	p.P688R	ENST00000334205	NM_003942.2	688	cCc/cGc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372495	118372495	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	158	894	0	ENST00000534358.1:c.6428C>G	p.Ser2143Ter	p.S2143*	ENST00000534358	NM_005933.3	2143	tCa/tGa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427350	49427350	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	125	802	0	ENST00000301067.7:c.11138C>G	p.Ser3713Ter	p.S3713*	ENST00000301067	NM_003482.3	3713	tCa/tGa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864217	57864217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	136	722	0	ENST00000228682.2:c.1694T>C	p.Phe565Ser	p.F565S	ENST00000228682	NM_005269.2	565	tTc/tCc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30133290	30133290	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs746736375		P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	158	852	1	ENST00000263025.4:c.208A>G	p.Ile70Val	p.I70V	ENST00000263025	NM_002746.2	70	Atc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577019	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	302	853	2	ENST00000269305.4:c.919_919+1delinsTT		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59761480	59761480	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	114	656	0	ENST00000259008.2:c.2927A>T	p.Glu976Val	p.E976V	ENST00000259008	NM_032043.2	976	gAa/gTa																																																																														
AXL	558	MSKCC	GRCh37	19	41727073	41727073	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	173	1004	0	ENST00000301178.4:c.331G>C	p.Asp111His	p.D111H	ENST00000301178	NM_021913.4	111	Gac/Cac																																																																														
ATR	545	MSKCC	GRCh37	3	142217460	142217460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	203	602	1	ENST00000350721.4:c.5537G>A	p.Arg1846Gln	p.R1846Q	ENST00000350721	NM_001184.3	1846	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142297528	142297541	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGGCCATGTTCC	CCAGGCCATGTTCC	-			P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	202	759	0	ENST00000350721.4:c.6_19del	p.Glu3AlafsTer20	p.E3Afs*20	ENST00000350721	NM_001184.3	2	ggGGAACATGGCCTGGag/ggag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950075	38950075	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	131	660	0	ENST00000357387.3:c.3875C>G	p.Ser1292Cys	p.S1292C	ENST00000357387	NM_152756.3	1292	tCt/tGt																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778211	27778211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	249	870	0	ENST00000369163.2:c.360C>G	p.Ile120Met	p.I120M	ENST00000369163	NM_003536.2	120	atC/atG																																																																														
MTOR	2475	MSKCC	GRCh37	1	11169376	11169376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	61	804	1	ENST00000361445.4:c.7499T>A	p.Ile2500Asn	p.I2500N	ENST00000361445	NM_004958.3	2500	aTt/aAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163376	47163377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	16	462	0	ENST00000409792.3:c.2749dup	p.Ser917LysfsTer18	p.S917Kfs*18	ENST00000409792	NM_014159.6	917	agt/aAgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271999	15271999	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs897705605		P-0021781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	111	953	0	ENST00000263388.2:c.6440G>A	p.Gly2147Asp	p.G2147D	ENST00000263388	NM_000435.2	2147	gGt/gAt																																																																														
VHL	7428	MSKCC	GRCh37	3	10183725	10183726	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0021781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	130	947	0	ENST00000256474.2:c.194_195del	p.Ser65CysfsTer66	p.S65Cfs*66	ENST00000256474	NM_000551.3	65	tCG/t																																																																														
VHL	7428	MSKCC	GRCh37	3	10183738	10183738	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	149	976	0	ENST00000256474.2:c.207del	p.Glu70SerfsTer89	p.E70Sfs*89	ENST00000256474	NM_000551.3	69	cgC/cg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637589	52637589	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	30	808	2	ENST00000394830.3:c.2727del	p.Lys909AsnfsTer6	p.K909Nfs*6	ENST00000394830	NM_018313.4	909	aaA/aa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53231133	53231134	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0021781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	79	363	0	ENST00000375401.3:c.1767_1768dup	p.Ala590ValfsTer70	p.A590Vfs*70	ENST00000375401	NM_004187.3	590	gca/gTGca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCT			P-0022097-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	321	859	0	ENST00000269571.5:c.2314_2325dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCT																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30103718	30103718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022097-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	1105	607	0	ENST00000331968.5:c.1220T>C	p.Met407Thr	p.M407T	ENST00000331968	NM_002742.2	407	aTg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577045	7577045	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022097-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	262	847	0	ENST00000269305.4:c.893del	p.Glu298GlyfsTer47	p.E298Gfs*47	ENST00000269305	NM_001126112.2	298	gAg/gg																																																																														
APC	324	MSKCC	GRCh37	5	112173885	112173885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022097-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	136	460	0	ENST00000257430.4:c.2594C>T	p.Pro865Leu	p.P865L	ENST00000257430	NM_000038.5	865	cCa/cTa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660462	227660462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143760685		P-0022097-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	84	646	0	ENST00000305123.5:c.2993G>A	p.Arg998His	p.R998H	ENST00000305123	NM_005544.2	998	cGt/cAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711311	114711311	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022097-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	94	470	0	ENST00000543371.1:c.326C>G	p.Pro109Arg	p.P109R	ENST00000543371	NM_001198531.1	109	cCc/cGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	97	772	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	42	421	0	ENST00000342988.3:c.1255G>C	p.Gly419Arg	p.G419R	ENST00000342988	NM_005359.5	419	Ggg/Cgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	74	530	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	94	593	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	41	367	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	137	787	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
YAP1	10413	MSKCC	GRCh37	11	102094419	102094420	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTCCCG			P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	72	562	0	ENST00000282441.5:c.1100_1105dup	p.Pro368_Gly369insAlaPro	p.P368_G369insAP	ENST00000282441	NM_001130145.2	367	tct/tCTCCCGct																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562489	21562489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	13	116	0	ENST00000382592.4:c.1430C>T	p.Pro477Leu	p.P477L	ENST00000382592	NM_014572.2	477	cCc/cTc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161274	56161274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	45	345	0	ENST00000399503.3:c.1143G>T	p.Lys381Asn	p.K381N	ENST00000399503	NM_005921.1	381	aaG/aaT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024882-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	112	196	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0025611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	93	770	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593638	55593661	+	inframe_deletion	In_Frame_Del	DEL	TGTTTACATAGACCCAACACAACT	TGTTTACATAGACCCAACACAACT	-			P-0025633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	213	461	0	ENST00000288135.5:c.1705_1728del	p.Val569_Leu576del	p.V569_L576del	ENST00000288135	NM_000222.2	568	taTGTTTACATAGACCCAACACAACTt/tat																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115275224	115275224	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0025633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	229	476	0	ENST00000438362.2:c.1188+1G>A		p.X396_splice	ENST00000438362	NM_001242891.1	396																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981775	201981776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	295	500	0	ENST00000359651.3:c.487dup	p.Ser163LysfsTer33	p.S163Kfs*33	ENST00000359651		162	-/A																																																																														
MGA	23269	MSKCC	GRCh37	15	42041016	42041016	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1231328415		P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	96	622	1	ENST00000219905.7:c.5394G>A	p.Met1798Ile	p.M1798I	ENST00000219905	NM_001164273.1	1798	atG/atA																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43720360	43720360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	304	465	0	ENST00000382044.4:c.3682G>A	p.Glu1228Lys	p.E1228K	ENST00000382044	NM_001141980.1	1228	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786652	3786652	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	353	442	0	ENST00000262367.5:c.4559A>T	p.Lys1520Met	p.K1520M	ENST00000262367	NM_004380.2	1520	aAg/aTg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26101091	26101091	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	226	351	0	ENST00000435504.4:c.1A>G	p.Met1?	p.M1?	ENST00000435504		1	Atg/Gtg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44515577	44515577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	188	563	0	ENST00000291552.4:c.319G>A	p.Asp107Asn	p.D107N	ENST00000291552	NM_006758.2	107	Gac/Aac																																																																														
EP300	2033	MSKCC	GRCh37	22	41568569	41568569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	237	635	0	ENST00000263253.7:c.4519G>A	p.Asp1507Asn	p.D1507N	ENST00000263253	NM_001429.3	1507	Gat/Aat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	52	453	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	155	277	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	116	148	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913381		P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	163	167	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913381		P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	163	167	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913381		P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	163	167	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942808	44942809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	264	560	0	ENST00000377967.4:c.3388_3389insTT	p.Asn1130IlefsTer8	p.N1130Ifs*8	ENST00000377967	NM_021140.2	1130	aac/aTTac																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649623	48649623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	68	636	0	ENST00000376670.3:c.107C>G	p.Ser36Cys	p.S36C	ENST00000376670	NM_002049.3	36	tCt/tGt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179031	123179037	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTACC	ACTTACC	TAA			P-0026207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	91	564	1	ENST00000218089.9:c.480_486delinsTAA	p.Leu161LysfsTer21	p.L161Kfs*21	ENST00000218089	NM_001042749.1	160	ccACTTACC/ccTAA																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563174	21563174	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	154	479	0	ENST00000382592.4:c.745C>T	p.Gln249Ter	p.Q249*	ENST00000382592	NM_014572.2	249	Cag/Tag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945209	44945209	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1479629068		P-0026299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	93	139	0	ENST00000377967.4:c.3533A>G	p.Asn1178Ser	p.N1178S	ENST00000377967	NM_021140.2	1178	aAt/aGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	378	317	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0026437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	155	454	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
FLT1	2321	MSKCC	GRCh37	13	28903811	28903811	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199497877		P-0027617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	363	602	3	ENST00000282397.4:c.2648C>T	p.Thr883Ile	p.T883I	ENST00000282397	NM_002019.4	883	aCc/aTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42034794	42034794	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	350	474	0	ENST00000219905.7:c.4636G>C	p.Val1546Leu	p.V1546L	ENST00000219905	NM_001164273.1	1546	Gtt/Ctt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520001		P-0027617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	509	604	1	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG																																																																														
MLH1	4292	MSKCC	GRCh37	3	37042504	37043233	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGATTTAGCCAGTATTTCTACCTATGGCTTTCGAGGTGAGGTAAGCTAAAGATTCAAGAAATGTGTAAAATATCCTCCTGTGATGACATTGTCTGTCATTTGTTAGTATGTATTTCTCAACATAGATAAATAAGGTTTGGTACCTTTTACTTGTTAAATGTATGCAAATCTGAGCAAACTTAATGAACTTTAACTTTCAAAGACTGAGAATTGTTCATAAATAAACTATTTTACCTGCAGAGACCTCTGATATATGTTTCTTGATGGAAGTACCCAGTACCACCTATGAAGTTTTCTTGTCAAAAAATCAAATGTGAATCTGATCATTACTTAGATCTAAGTACCAATATATGAAAAATATAGGAGACAAGGAAGCATGGTAAATGATACTGAGATTGGGAGACTACATGGAAAAAGACTTGTTCCCTTCAACAGATAGACAGCAGGGAAAAAAGAATAGAGAAAGGAGTAAAGAACCTGTAGATTAAAAGACATTTAAGGGACATATGAACCAGGTCCAGTGTATAGATCTTACCTAAATCCTGATGGAGCAAACTATAAAAAAATTTTTTTGAGACAAATGTTTGAATACAGGTTGACTATTTGATGGCATTAAGGAGAAATTATGAATTATCTTGGTATAAGAATATTGTCATGGGTTTTTTTTTTTGAGTCCTTACCTGTTAAGATACATACTAAAATATTTGTGGGTAAAATTATATGACGTAT	AGGATTTAGCCAGTATTTCTACCTATGGCTTTCGAGGTGAGGTAAGCTAAAGATTCAAGAAATGTGTAAAATATCCTCCTGTGATGACATTGTCTGTCATTTGTTAGTATGTATTTCTCAACATAGATAAATAAGGTTTGGTACCTTTTACTTGTTAAATGTATGCAAATCTGAGCAAACTTAATGAACTTTAACTTTCAAAGACTGAGAATTGTTCATAAATAAACTATTTTACCTGCAGAGACCTCTGATATATGTTTCTTGATGGAAGTACCCAGTACCACCTATGAAGTTTTCTTGTCAAAAAATCAAATGTGAATCTGATCATTACTTAGATCTAAGTACCAATATATGAAAAATATAGGAGACAAGGAAGCATGGTAAATGATACTGAGATTGGGAGACTACATGGAAAAAGACTTGTTCCCTTCAACAGATAGACAGCAGGGAAAAAAGAATAGAGAAAGGAGTAAAGAACCTGTAGATTAAAAGACATTTAAGGGACATATGAACCAGGTCCAGTGTATAGATCTTACCTAAATCCTGATGGAGCAAACTATAAAAAAATTTTTTTGAGACAAATGTTTGAATACAGGTTGACTATTTGATGGCATTAAGGAGAAATTATGAATTATCTTGGTATAAGAATATTGTCATGGGTTTTTTTTTTTGAGTCCTTACCTGTTAAGATACATACTAAAATATTTGTGGGTAAAATTATATGACGTAT	-			P-0027617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	199	575	0	ENST00000231790.2:c.270_306+693del		p.X90_splice	ENST00000231790	NM_000249.3	90																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0028070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	261	581	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0028070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	670	626	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692839	89692839	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	168	205	0	ENST00000371953.3:c.323T>G	p.Leu108Arg	p.L108R	ENST00000371953	NM_000314.4	108	cTt/cGt																																																																														
BBC3	27113	MSKCC	GRCh37	19	47735799	47735799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	370	657	0	ENST00000449228.1:c.61A>T	p.Thr21Ser	p.T21S	ENST00000449228	NM_001127240.2	21	Acg/Tcg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265542	198265542	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1402437917		P-0028070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	378	656	0	ENST00000335508.6:c.2615T>C	p.Ile872Thr	p.I872T	ENST00000335508	NM_012433.2	872	aTt/aCt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589139	67589140	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAATAACAAATTAATCA			P-0028070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	51	268	0	ENST00000274335.5:c.1133_1149dup	p.Phe384ThrfsTer3	p.F384Tfs*3	ENST00000274335		376	gga/ggAAATAACAAATTAATCAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589580	67589588	+	inframe_deletion	In_Frame_Del	DEL	AATTACATG	AATTACATG	-			P-0028070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	190	360	0	ENST00000274335.5:c.1346_1354del	p.Leu449_Glu451del	p.L449_E451del	ENST00000274335		448	aAATTACATGaa/aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	74	451	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0028084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	65	564	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95577788	95577788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	21	216	0	ENST00000343455.3:c.2122C>G	p.Leu708Val	p.L708V	ENST00000343455	NM_177438.2	708	Ctg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	18	422	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831004	72831005	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0029204-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			342	40	432	0	ENST00000268489.5:c.5576_5577del	p.Ser1859TyrfsTer69	p.S1859Yfs*69	ENST00000268489	NM_006885.3	1859	tCT/t																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562254	95562254	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029204-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			189	16	351	0	ENST00000343455.3:c.5003A>C	p.Asn1668Thr	p.N1668T	ENST00000343455	NM_177438.2	1668	aAt/aCt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029204-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			268	35	499	0	ENST00000347630.2:c.305T>A	p.Phe102Tyr	p.F102Y	ENST00000347630	NM_001007230.1	102	tTc/tAc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257568	19257568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029204-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			406	35	458	0	ENST00000162023.5:c.658G>A	p.Gly220Arg	p.G220R	ENST00000162023		220	Ggg/Agg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86649047	86649047	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs952699191		P-0029204-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			143	21	251	0	ENST00000274376.6:c.1327A>G	p.Met443Val	p.M443V	ENST00000274376	NM_002890.2	443	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0029830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	173	462	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
POLE	5426	MSKCC	GRCh37	12	133220466	133220466	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	64	343	0	ENST00000320574.5:c.4247C>G	p.Ala1416Gly	p.A1416G	ENST00000320574	NM_006231.2	1416	gCt/gGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29490369	29490381	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGTCTTTAGTC	GCAGTCTTTAGTC	-			P-0029830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	72	277	0	ENST00000358273.4:c.457_469del	p.Val153PhefsTer8	p.V153Ffs*8	ENST00000358273	NM_001042492.2	152	GCAGTCTTTAGTCgc/gc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943386	17943391	+	stop_gained	Nonsense_Mutation	ONP	GATCTG	GATCTG	CATCTA			P-0029830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	62	444	0	ENST00000458235.1:c.2617_2622delinsTAGATG	p.Gln873_Ile874delinsTer	p.Q873_I874delins*	ENST00000458235	NM_000215.3	873	CAGATC/TAGATG																																																																														
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	43	216	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0030121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	208	693	2	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006224	22006224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	126	469	0	ENST00000276925.6:c.179G>A	p.Arg60His	p.R60H	ENST00000276925	NM_004936.3	60	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438085	110438085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	127	395	0	ENST00000375856.3:c.316G>T	p.Asp106Tyr	p.D106Y	ENST00000375856	NM_003749.2	106	Gac/Tac																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118989	70118990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGGCAGA			P-0030121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	180	703	0	ENST00000245479.2:c.563_570dup	p.Glu191ArgfsTer31	p.E191Rfs*31	ENST00000245479	NM_000346.3	187	-/GAGGCAGA																																																																														
APC	324	MSKCC	GRCh37	5	112170760	112170761	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0030121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	133	533	0	ENST00000257430.4:c.1858_1859del	p.Leu620TyrfsTer13	p.L620Yfs*13	ENST00000257430	NM_000038.5	619	aCT/a																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100093	157100117	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCGGCGGCAGCAGCAGGAG	GCGGCGGCGGCGGCAGCAGCAGGAG	-			P-0030121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	28	37	0	ENST00000346085.5:c.1044_1068del	p.Ala350MetfsTer11	p.A350Mfs*11	ENST00000346085	NM_020732.3	344	GCGGCGGCGGCGGCAGCAGCAGGAGgc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	350	535	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	501	691	6	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175876	112175876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	245	350	0	ENST00000257430.4:c.4585C>T	p.Gln1529Ter	p.Q1529*	ENST00000257430	NM_000038.5	1529	Cag/Tag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	474	628	0	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372555	118372555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	413	561	3	ENST00000534358.1:c.6488G>A	p.Arg2163Gln	p.R2163Q	ENST00000534358	NM_005933.3	2163	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662323	67662323	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	600	575	0	ENST00000264010.4:c.1569C>G	p.Tyr523Ter	p.Y523*	ENST00000264010	NM_006565.3	523	taC/taG																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209298	98209298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149667902		P-0031206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	511	696	1	ENST00000331920.6:c.4240G>A	p.Val1414Met	p.V1414M	ENST00000331920	NM_000264.3	1414	Gtg/Atg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794554	42794554	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150295260		P-0031210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	188	768	0	ENST00000575354.2:c.1634C>T	p.Ser545Leu	p.S545L	ENST00000575354	NM_015125.3	545	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0031210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	619	705	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0031210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	89	337	1				ENST00000310581	NM_198253.2																																																																																
WT1	7490	MSKCC	GRCh37	11	32456395	32456395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	215	629	0	ENST00000332351.3:c.497G>A	p.Gly166Asp	p.G166D	ENST00000332351	NM_024426.4	166	gGc/gAc																																																																														
PGR	5241	MSKCC	GRCh37	11	100933356	100933365	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTGGTGAA	ACCTGGTGAA	-			P-0031210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	312	578	1	ENST00000325455.5:c.2025_2034del	p.Ser676LysfsTer5	p.S676Kfs*5	ENST00000325455	NM_001202474.3	675	ttTTCACCAGGT/tt																																																																														
MSI1	4440	MSKCC	GRCh37	12	120796847	120796847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769968859		P-0031210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	166	750	0	ENST00000257552.2:c.412G>A	p.Ala138Thr	p.A138T	ENST00000257552	NM_002442.3	138	Gcc/Acc																																																																														
NF1	4763	MSKCC	GRCh37	17	29701139	29701139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	146	492	0	ENST00000358273.4:c.8486G>T	p.Ser2829Ile	p.S2829I	ENST00000358273	NM_001042492.2	2829	aGt/aTt																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47601082	47601082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224710		P-0031210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	139	655	0	ENST00000263735.4:c.320C>T	p.Ala107Val	p.A107V	ENST00000263735	NM_002354.2	107	gCc/gTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55598056	55598056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	125	443	0	ENST00000288135.5:c.2253T>A	p.Asp751Glu	p.D751E	ENST00000288135	NM_000222.2	751	gaT/gaA																																																																														
TET2	54790	MSKCC	GRCh37	4	106156145	106156145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	65	431	0	ENST00000380013.4:c.1046G>C	p.Gly349Ala	p.G349A	ENST00000380013	NM_001127208.2	349	gGt/gCt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157520040	157520040	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0031210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	234	458	0	ENST00000346085.5:c.4109C>G	p.Pro1370Arg	p.P1370R	ENST00000346085	NM_020732.3	1370	cCg/cGg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970931	70970931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	194	715	0	ENST00000276594.2:c.1330C>G	p.Arg444Gly	p.R444G	ENST00000276594	NM_024504.3	444	Cgg/Ggg																																																																														
BARD1	580	MSKCC	GRCh37	2	215646015	215646015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	89	565	0	ENST00000260947.4:c.583G>A	p.Ala195Thr	p.A195T	ENST00000260947	NM_000465.2	195	Gct/Act																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	34	365	0	ENST00000342988.3:c.1610A>T	p.Asp537Val	p.D537V	ENST00000342988	NM_005359.5	537	gAc/gTc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0031497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	56	457	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916946	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0031497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	44	448	0	ENST00000263967.3:c.332_334del	p.Lys111del	p.K111del	ENST00000263967	NM_006218.2	111	AAG/-																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022817	31022817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770762273		P-0031497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	58	515	0	ENST00000375687.4:c.2302C>T	p.Gln768Ter	p.Q768*	ENST00000375687	NM_015338.5	768	Caa/Taa																																																																														
ETV6	2120	MSKCC	GRCh37	12	12006495	12006495	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1157133215		P-0031497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	88	628	0	ENST00000396373.4:c.463G>A	p.Asp155Asn	p.D155N	ENST00000396373	NM_001987.4	155	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380328	25380328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	62	366	0	ENST00000256078.4:c.130G>A	p.Val44Ile	p.V44I	ENST00000256078	NM_033360.2	44	Gta/Ata																																																																														
MALT1	10892	MSKCC	GRCh37	18	56400745	56400745	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	37	332	0	ENST00000348428.3:c.1339A>T	p.Lys447Ter	p.K447*	ENST00000348428	NM_006785.3	447	Aaa/Taa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244185	5244185	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774952239		P-0031497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	39	568	2	ENST00000357368.4:c.1297G>A	p.Val433Met	p.V433M	ENST00000357368	NM_002850.3	433	Gtg/Atg																																																																														
KIT	3815	MSKCC	GRCh37	4	55599332	55599332	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519710		P-0031775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	227	393	0	ENST00000288135.5:c.2458G>T	p.Asp820Tyr	p.D820Y	ENST00000288135	NM_000222.2	820	Gat/Tat																																																																														
KIT	3815	MSKCC	GRCh37	4	55593582	55593597	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	AAACCCATGTATGAAG	AAACCCATGTATGAAG	T			P-0031775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	176	245	1	ENST00000288135.5:c.1648_1663delinsT	p.Lys550_Val555delinsLeu	p.K550_V555delinsL	ENST00000288135	NM_000222.2	550	AAACCCATGTATGAAGta/Tta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	67	649	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TET1	80312	MSKCC	GRCh37	10	70450909	70450909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	89	524	0	ENST00000373644.4:c.5749G>T	p.Val1917Leu	p.V1917L	ENST00000373644	NM_030625.2	1917	Gtg/Ttg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061241	38061244	+	frameshift_variant	Frame_Shift_Del	DEL	AGTC	AGTC	-			P-0032256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	144	589	0	ENST00000250448.2:c.745_748del	p.Asp249ProfsTer71	p.D249Pfs*71	ENST00000250448	NM_004496.3	249	GACTcc/cc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138478157	138478157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	86	369	0	ENST00000289153.2:c.29C>G	p.Ala10Gly	p.A10G	ENST00000289153	NM_006219.2	10	gCt/gGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859392	151859393	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0032256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	113	419	0	ENST00000262189.6:c.11269_11270del	p.Gln3757GlufsTer18	p.Q3757Efs*18	ENST00000262189	NM_170606.2	3757	CAg/g																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781328	135781328	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	43	578	0	ENST00000298552.3:c.1637A>C	p.Asp546Ala	p.D546A	ENST00000298552	NM_001162426.1	546	gAc/gCc																																																																														
ATM	472	MSKCC	GRCh37	11	108124723	108124738	+	protein_altering_variant	In_Frame_Del	DEL	TTCTGGGATTATCAGA	TTCTGGGATTATCAGA	C			P-0032256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	83	383	0	ENST00000278616.4:c.2081_2096delinsC	p.Leu694_Glu699delinsPro	p.L694_E699delinsP	ENST00000278616	NM_000051.3	694	cTTCTGGGATTATCAGAa/cCa																																																																														
PAK7	0	MSKCC	GRCh37	20	9547022	9547022	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs58486349		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	24	204	0	ENST00000353224.5:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000353224	NM_177990.2	334	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913386		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	75	417	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913386		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	75	417	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112177788	112177788	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752091655		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	29	266	0	ENST00000257430.4:c.6497G>A	p.Arg2166Gln	p.R2166Q	ENST00000257430	NM_000038.5	2166	cGa/cAa																																																																														
FYN	2534	MSKCC	GRCh37	6	112029177	112029177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	70	341	0	ENST00000368678.4:c.391G>A	p.Gly131Ser	p.G131S	ENST00000368678		131	Ggt/Agt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209116179	209116179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs555882127		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	45	324	1	ENST00000345146.2:c.97C>T	p.Pro33Ser	p.P33S	ENST00000345146	NM_005896.2	33	Ccc/Tcc																																																																														
ALK	238	MSKCC	GRCh37	2	29446209	29446209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs774951734		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	61	445	0	ENST00000389048.3:c.3358C>T	p.Arg1120Trp	p.R1120W	ENST00000389048	NM_004304.4	1120	Cgg/Tgg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355540	15355540	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149185763		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	133	634	0	ENST00000263377.2:c.2192C>T	p.Pro731Leu	p.P731L	ENST00000263377	NM_058243.2	731	cCc/cTc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924327	112924327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	90	522	0	ENST00000351677.2:c.1273G>A	p.Asp425Asn	p.D425N	ENST00000351677	NM_002834.3	425	Gac/Aac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969075	93969075	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs992785889		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	39	252	0	ENST00000369303.4:c.1921G>T	p.Ala641Ser	p.A641S	ENST00000369303	NM_004440.3	641	Gca/Tca																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267600971		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	103	732	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
ERG	2078	MSKCC	GRCh37	21	39795392	39795392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	110	665	0	ENST00000288319.7:c.328G>A	p.Glu110Lys	p.E110K	ENST00000288319	NM_182918.3	110	Gag/Aag																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388201066		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	68	394	1	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295253	+	upstream_gene_variant	5'Flank	ONP	GAGG	GAGG	AAGA			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	38	354	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40710637	40710637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1161104430		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	66	485	0	ENST00000373198.4:c.4214G>A	p.Gly1405Glu	p.G1405E	ENST00000373198	NM_133170.3	1405	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285173	212285173	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754420079		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	50	341	0	ENST00000342788.4:c.3128C>T	p.Ser1043Leu	p.S1043L	ENST00000342788	NM_005235.2	1043	tCg/tTg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120783979	120783979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112244011		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	102	701	1	ENST00000257552.2:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000257552	NM_002442.3	336	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089707	27089708	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	79	504	0	ENST00000324856.7:c.2663_2664delinsAA	p.Gly888Glu	p.G888E	ENST00000324856	NM_006015.4	888	gGG/gAA																																																																														
MPL	4352	MSKCC	GRCh37	1	43812591	43812591	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1305501233		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	62	423	0	ENST00000372470.3:c.1294C>T	p.His432Tyr	p.H432Y	ENST00000372470	NM_005373.2	432	Cat/Tat																																																																														
RET	5979	MSKCC	GRCh37	10	43596041	43596041	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	60	603	0	ENST00000355710.3:c.208C>T	p.Gln70Ter	p.Q70*	ENST00000355710	NM_020975.4	70	Cag/Tag																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022646	12022647	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	51	443	0	ENST00000396373.4:c.752_753delinsTT	p.Ser251Phe	p.S251F	ENST00000396373	NM_001987.4	251	tCC/tTT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287320	46287320	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	64	417	0	ENST00000334344.6:c.5268del	p.Phe1756LeufsTer9	p.F1756Lfs*9	ENST00000334344	NM_152641.2	1755	gaT/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435476	49435476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	98	731	0	ENST00000301067.7:c.6196G>C	p.Asp2066His	p.D2066H	ENST00000301067	NM_003482.3	2066	Gat/Cat																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348028	348028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750117207		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	114	785	0	ENST00000262320.3:c.1478C>T	p.Ser493Phe	p.S493F	ENST00000262320	NM_003502.3	493	tCc/tTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640569	3640569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	149	727	0	ENST00000294008.3:c.3070C>T	p.Pro1024Ser	p.P1024S	ENST00000294008	NM_032444.2	1024	Ccc/Tcc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991844	72991844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	109	564	2	ENST00000268489.5:c.2201C>T	p.Ser734Phe	p.S734F	ENST00000268489	NM_006885.3	734	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29556227	29556227	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs786203084		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	49	342	0	ENST00000358273.4:c.2594C>T	p.Pro865Leu	p.P865L	ENST00000358273	NM_001042492.2	865	cCa/cTa																																																																														
INSR	3643	MSKCC	GRCh37	19	7122916	7122916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	95	622	0	ENST00000302850.5:c.3343C>T	p.Leu1115Phe	p.L1115F	ENST00000302850	NM_000208.2	1115	Ctc/Ttc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303329	15303329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	112	661	0	ENST00000263388.2:c.199T>C	p.Cys67Arg	p.C67R	ENST00000263388	NM_000435.2	67	Tgc/Cgc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273081	18273082	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	88	614	1	ENST00000222254.8:c.971_972delinsTT	p.Ser324Phe	p.S324F	ENST00000222254	NM_005027.3	324	tCC/tTT																																																																														
CENPA	1058	MSKCC	GRCh37	2	27016091	27016092	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	92	460	0	ENST00000335756.4:c.367_368delinsTT	p.Pro123Leu	p.P123L	ENST00000335756	NM_001809.3	123	CCa/TTa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026317	48026317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	73	419	0	ENST00000234420.5:c.1195C>T	p.Pro399Ser	p.P399S	ENST00000234420	NM_000179.2	399	Cct/Tct																																																																														
XPO1	7514	MSKCC	GRCh37	2	61753644	61753644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	41	366	0	ENST00000401558.2:c.139C>T	p.Gln47Ter	p.Q47*	ENST00000401558	NM_003400.3	47	Caa/Taa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561387	9561387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	68	541	0	ENST00000353224.5:c.395C>T	p.Ser132Phe	p.S132F	ENST00000353224	NM_177990.2	132	tCc/tTc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375061	31375061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147421711		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	82	472	1	ENST00000328111.2:c.458C>T	p.Ser153Leu	p.S153L	ENST00000328111	NM_006892.3	153	tCg/tTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066761	94066761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	49	375	0	ENST00000369303.4:c.998C>T	p.Ser333Phe	p.S333F	ENST00000369303	NM_004440.3	333	tCt/tTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609677	117609677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	45	383	0	ENST00000368508.3:c.7022G>A	p.Gly2341Glu	p.G2341E	ENST00000368508	NM_002944.2	2341	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683824	117683824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754292558		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	69	507	0	ENST00000368508.3:c.3323C>T	p.Pro1108Leu	p.P1108L	ENST00000368508	NM_002944.2	1108	cCc/cTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2974164	2974164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	118	610	0	ENST00000396946.4:c.1441G>A	p.Glu481Lys	p.E481K	ENST00000396946	NM_032415.4	481	Gag/Aag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444296	50444296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	47	309	0	ENST00000331340.3:c.226G>A	p.Glu76Lys	p.E76K	ENST00000331340	NM_006060.4	76	Gaa/Aaa																																																																														
LYN	4067	MSKCC	GRCh37	8	56859022	56859022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	66	485	0	ENST00000519728.1:c.148C>T	p.Leu50Phe	p.L50F	ENST00000519728	NM_002350.3	50	Ctt/Ttt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968077	68968077	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567279949		P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	57	414	0	ENST00000288368.4:c.1106G>A	p.Gly369Glu	p.G369E	ENST00000288368	NM_024870.2	369	gGa/gAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020422	69020422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	99	533	0	ENST00000288368.4:c.2794G>A	p.Asp932Asn	p.D932N	ENST00000288368	NM_024870.2	932	Gat/Aat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933047	39933047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	91	806	0	ENST00000378444.4:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000378444	NM_001123385.1	518	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70341181	70341181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	70	487	0	ENST00000374080.3:c.740G>A	p.Gly247Glu	p.G247E	ENST00000374080		247	gGa/gAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937576	76937576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	63	419	0	ENST00000373344.5:c.3172G>A	p.Asp1058Asn	p.D1058N	ENST00000373344	NM_000489.3	1058	Gat/Aat																																																																														
ATRX	546	MSKCC	GRCh37	X	76937656	76937656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	60	438	0	ENST00000373344.5:c.3092G>A	p.Gly1031Asp	p.G1031D	ENST00000373344	NM_000489.3	1031	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	34	565	0	ENST00000269305.4:c.766A>C	p.Thr256Pro	p.T256P	ENST00000269305	NM_001126112.2	256	Aca/Cca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	40	464	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	19	460	0	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106196243	106196243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs777761555		P-0032756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	17	270	0	ENST00000380013.4:c.4576C>T	p.Gln1526Ter	p.Q1526*	ENST00000380013	NM_001127208.2	1526	Cag/Tag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048238	180048238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1324497116		P-0032756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	23	556	0	ENST00000261937.6:c.2035C>T	p.Arg679Trp	p.R679W	ENST00000261937	NM_182925.4	679	Cgg/Tgg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39074472	39074472	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs753147833		P-0032756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	15	278	0	ENST00000357387.3:c.8C>G	p.Ala3Gly	p.A3G	ENST00000357387	NM_152756.3	3	gCg/gGg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650332	48650332	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200599207		P-0032756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	22	572	1	ENST00000376670.3:c.302C>T	p.Thr101Met	p.T101M	ENST00000376670	NM_002049.3	101	aCg/aTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	31	341	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519886		P-0033840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	53	325	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515268	149515268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	18	654	0	ENST00000261799.4:c.214G>A	p.Glu72Lys	p.E72K	ENST00000261799	NM_002609.3	72	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440154	49440154	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	33	641	0	ENST00000301067.7:c.4472G>A	p.Trp1491Ter	p.W1491*	ENST00000301067	NM_003482.3	1491	tGg/tAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256662	16256662	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	29	517	0	ENST00000375759.3:c.3927T>G	p.Phe1309Leu	p.F1309L	ENST00000375759	NM_015001.2	1309	ttT/ttG																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115263299	115263299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	11	696	0	ENST00000438362.2:c.2051G>A	p.Gly684Glu	p.G684E	ENST00000438362	NM_001242891.1	684	gGg/gAg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047135	77047135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	20	498	0	ENST00000356341.3:c.1409T>C	p.Leu470Pro	p.L470P	ENST00000356341	NM_002576.4	470	cTg/cCg																																																																														
RECQL	5965	MSKCC	GRCh37	12	21629895	21629895	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	14	649	0	ENST00000421138.2:c.899T>G	p.Phe300Cys	p.F300C	ENST00000421138		300	tTt/tGt																																																																														
B2M	567	MSKCC	GRCh37	15	45007793	45007793	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	56	455	0	ENST00000558401.1:c.240G>A	p.Trp80Ter	p.W80*	ENST00000558401	NM_004048.2	80	tgG/tgA																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347404	89347404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	23	684	0	ENST00000301030.4:c.5546G>A	p.Gly1849Glu	p.G1849E	ENST00000301030	NM_001256183.1	1849	gGg/gAg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222483	39222483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	15	787	0	ENST00000402219.2:c.3127T>C	p.Ser1043Pro	p.S1043P	ENST00000402219	NM_005633.3	1043	Tca/Cca																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0033933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	166	241	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138376590	138376590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	255	428	0	ENST00000289153.2:c.2884T>A	p.Tyr962Asn	p.Y962N	ENST00000289153	NM_006219.2	962	Tat/Aat																																																																														
B2M	567	MSKCC	GRCh37	15	45007630	45008460	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGATTCAGGTTTACTCACGTCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTCTATCTCTTGTACTACACTGAATTCACCCCCACTGAAAAAGATGAGTATGCCTGCCGTGTGAACCATGTGACTTTGTCACAGCCCAAGATAGTTAAGTGGGGTAAGTCTTACATTCTTTTGTAAGCTGCTGAAAGTTGTGTATGAGTAGTCATATCATAAAGCTGCTTTGATATAAAAAAGGTCTATGGCCATACTACCCTGAATGAGTCCCATCCCATCTGATATAAACAATCTGCATATTGGGATTGTCAGGGAATGTTCTTAAAGATCAGATTAGTGGCACCTGCTGAGATACTGATGCACAGCATGGTTTCTGAACCAGTAGTTTCCCTGCAGTTGAGCAGGGAGCAGCAGCAGCACTTGCACAAATACATATACACTCTTAACACTTCTTACCTACTGGCTTCCTCTAGCTTTTGTGGCAGCTTCAGGTATATTTAGCACTGAACGAACATCTCAAGAAGGTATAGGCCTTTGTTTGTAAGTCCTGCTGTCCTAGCATCCTATAATCCTGGACTTCTCCAGTACTTTCTGGCTGGATTGGTATCTGAGGCTAGTAGGAAGGGCTTGTTCCTGCTGGGTAGCTCTAAACAATGTATTCATGGGTAGGAACAGCAGCCTATTCTGCCAGCCTTATTTCTAACCATTTTAGACATTTGTT	AGATTCAGGTTTACTCACGTCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTCTATCTCTTGTACTACACTGAATTCACCCCCACTGAAAAAGATGAGTATGCCTGCCGTGTGAACCATGTGACTTTGTCACAGCCCAAGATAGTTAAGTGGGGTAAGTCTTACATTCTTTTGTAAGCTGCTGAAAGTTGTGTATGAGTAGTCATATCATAAAGCTGCTTTGATATAAAAAAGGTCTATGGCCATACTACCCTGAATGAGTCCCATCCCATCTGATATAAACAATCTGCATATTGGGATTGTCAGGGAATGTTCTTAAAGATCAGATTAGTGGCACCTGCTGAGATACTGATGCACAGCATGGTTTCTGAACCAGTAGTTTCCCTGCAGTTGAGCAGGGAGCAGCAGCAGCACTTGCACAAATACATATACACTCTTAACACTTCTTACCTACTGGCTTCCTCTAGCTTTTGTGGCAGCTTCAGGTATATTTAGCACTGAACGAACATCTCAAGAAGGTATAGGCCTTTGTTTGTAAGTCCTGCTGTCCTAGCATCCTATAATCCTGGACTTCTCCAGTACTTTCTGGCTGGATTGGTATCTGAGGCTAGTAGGAAGGGCTTGTTCCTGCTGGGTAGCTCTAAACAATGTATTCATGGGTAGGAACAGCAGCCTATTCTGCCAGCCTTATTTCTAACCATTTTAGACATTTGTT	-			P-0033933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			55	63	225	0	ENST00000558401.1:c.79_347-65del		p.X27_splice	ENST00000558401	NM_004048.2	27																																																																															
EP300	2033	MSKCC	GRCh37	22	41560073	41560073	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	136	256	0	ENST00000263253.7:c.3745G>C	p.Glu1249Gln	p.E1249Q	ENST00000263253	NM_001429.3	1249	Gag/Cag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151842335	151842335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	149	315	0	ENST00000262189.6:c.14077C>G	p.Arg4693Gly	p.R4693G	ENST00000262189	NM_170606.2	4693	Cga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0034126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	79	594	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519995		P-0034126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	8	547	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32790091	32790091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	20	178	0	ENST00000374899.4:c.1937C>A	p.Thr646Asn	p.T646N	ENST00000374899	NM_018833.2	646	aCc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0034274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	78	418	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0034274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	101	584	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
BTK	695	MSKCC	GRCh37	X	100611203	100611203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	43	529	0	ENST00000308731.7:c.1403G>A	p.Arg468His	p.R468H	ENST00000308731	NM_000061.2	468	cGc/cAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868196	37868196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1308928763		P-0034274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	108	527	2	ENST00000269571.5:c.917C>T	p.Thr306Met	p.T306M	ENST00000269571		306	aCg/aTg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856250	111856250	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1246649893		P-0034274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	26	129	0	ENST00000341259.2:c.301G>A	p.Glu101Lys	p.E101K	ENST00000341259	NM_005475.2	101	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41265687	41266331	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAA	TTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAA	-			P-0034274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	59	150	0	ENST00000349496.5:c.13+116_241+88del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	472	556	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577525	7577527	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0034324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	292	850	0	ENST00000269305.4:c.754_756del	p.Leu252del	p.L252del	ENST00000269305	NM_001126112.2	252	CTC/-																																																																														
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	419	612	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
RFWD2	0	MSKCC	GRCh37	1	175956185	175956185	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	38	352	0	ENST00000367669.3:c.2027T>A	p.Leu676Gln	p.L676Q	ENST00000367669	NM_022457.5	676	cTa/cAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974856	15974856	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	64	494	0	ENST00000268712.3:c.4019G>T	p.Gly1340Val	p.G1340V	ENST00000268712	NM_006311.3	1340	gGc/gTc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095917	178095917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	51	496	0	ENST00000397062.3:c.1414A>G	p.Lys472Glu	p.K472E	ENST00000397062	NM_006164.4	472	Aaa/Gaa																																																																														
BARD1	580	MSKCC	GRCh37	2	215595178	215595184	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTCAT	ATTTCAT	-			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	40	407	0	ENST00000260947.4:c.1952_1958del	p.Tyr651PhefsTer61	p.Y651Ffs*61	ENST00000260947	NM_000465.2	651	tATGAAATt/tt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080581	5080581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	52	337	0	ENST00000381652.3:c.2332G>T	p.Ala778Ser	p.A778S	ENST00000381652	NM_004972.3	778	Gca/Tca																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589808	28589808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	42	444	0	ENST00000241453.7:c.2572G>C	p.Glu858Gln	p.E858Q	ENST00000241453	NM_004119.2	858	Gaa/Caa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589804	28589805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	40	440	0	ENST00000241453.7:c.2575dup	p.Ser859LysfsTer4	p.S859Kfs*4	ENST00000241453	NM_004119.2	859	agc/aAgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444120	49444120	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	71	561	1	ENST00000301067.7:c.3251del	p.Pro1084GlnfsTer35	p.P1084Qfs*35	ENST00000301067	NM_003482.3	1084	cCa/ca																																																																														
NF2	4771	MSKCC	GRCh37	22	30051629	30051630	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0035840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	38	445	0	ENST00000338641.4:c.564_565dup	p.Thr189IlefsTer21	p.T189Ifs*21	ENST00000338641	NM_000268.3	188	att/atTAt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442078	52442078	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	83	487	0	ENST00000460680.1:c.271T>G	p.Cys91Gly	p.C91G	ENST00000460680	NM_004656.3	91	Tgt/Ggt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941314	71941314	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0036092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	177	625	0	ENST00000298229.2:c.1089del	p.Ile364SerfsTer48	p.I364Sfs*48	ENST00000298229	NM_001567.3	363	cgC/cg																																																																														
PGR	5241	MSKCC	GRCh37	11	100999558	100999558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	300	930	1	ENST00000325455.5:c.244G>A	p.Asp82Asn	p.D82N	ENST00000325455	NM_001202474.3	82	Gac/Aac																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433446	138433446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	110	523	0	ENST00000289153.2:c.1166T>C	p.Ile389Thr	p.I389T	ENST00000289153	NM_006219.2	389	aTt/aCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	106	573	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
SMO	6608	MSKCC	GRCh37	7	128850951	128850951	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs767352128		P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	69	479	0	ENST00000249373.3:c.1798G>T	p.Val600Leu	p.V600L	ENST00000249373	NM_005631.4	600	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1060501195		P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	125	731	0	ENST00000269305.4:c.313G>C	p.Gly105Arg	p.G105R	ENST00000269305	NM_001126112.2	105	Ggc/Cgc																																																																														
KDR	3791	MSKCC	GRCh37	4	55961005	55961005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	43	533	0	ENST00000263923.4:c.2935G>A	p.Glu979Lys	p.E979K	ENST00000263923	NM_002253.2	979	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100850	27100850	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	39	547	0	ENST00000324856.7:c.4133del	p.Gly1378AlafsTer103	p.G1378Afs*103	ENST00000324856	NM_006015.4	1378	Ggc/gc																																																																														
POLE	5426	MSKCC	GRCh37	12	133202743	133202743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	55	535	0	ENST00000320574.5:c.6491G>T	p.Cys2164Phe	p.C2164F	ENST00000320574	NM_006231.2	2164	tGc/tTc																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73775179	73775180	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	115	539	0	ENST00000254810.4:c.76_77delinsTT	p.Ala26Phe	p.A26F	ENST00000254810	NM_005324.3	26	GCc/TTc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264761	46264761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	148	510	1	ENST00000371998.3:c.1631C>T	p.Pro544Leu	p.P544L	ENST00000371998		544	cCa/cTa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183697	10183697	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	59	479	0	ENST00000256474.2:c.166G>T	p.Ala56Ser	p.A56S	ENST00000256474	NM_000551.3	56	Gcc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965658	93965658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	74	503	1	ENST00000369303.4:c.2270G>T	p.Arg757Met	p.R757M	ENST00000369303	NM_004440.3	757	aGg/aTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545731	106545731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	117	621	0	ENST00000359195.3:c.3208G>C	p.Asp1070His	p.D1070H	ENST00000359195	NM_002649.2	1070	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	680	593	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998292	100998292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	17	58	0	ENST00000325455.5:c.1510G>A	p.Ala504Thr	p.A504T	ENST00000325455	NM_001202474.3	504	Gcc/Acc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681706	30681706	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56118863		P-0036252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	586	451	2	ENST00000376406.3:c.391C>T	p.His131Tyr	p.H131Y	ENST00000376406	NM_014641.2	131	Cat/Tat																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729858	41729858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	157	490	0	ENST00000242208.4:c.671C>G	p.Ser224Cys	p.S224C	ENST00000242208	NM_002192.2	224	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0036619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	29	628	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0036619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	28	605	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0036619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	13	252	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112175223	112175223	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	24	195	0	ENST00000257430.4:c.3933del	p.Ile1311MetfsTer10	p.I1311Mfs*10	ENST00000257430	NM_000038.5	1311	aTt/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106366	27106383	+	inframe_deletion	In_Frame_Del	DEL	TTTGTGCCAGGCAATGAC	TTTGTGCCAGGCAATGAC	-			P-0036619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	28	493	1	ENST00000324856.7:c.5981_5998del	p.Val1994_Phe1999del	p.V1994_F1999del	ENST00000324856	NM_006015.4	1993	TTTGTGCCAGGCAATGAC/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	112	252	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27100375	27100375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	290	492	0	ENST00000324856.7:c.4087C>T	p.Gln1363Ter	p.Q1363*	ENST00000324856	NM_006015.4	1363	Caa/Taa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	332	516	0	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa																																																																														
CDH1	999	MSKCC	GRCh37	16	68856113	68856113	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587782750		P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	294	446	1	ENST00000261769.5:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000261769	NM_004360.3	641	Cag/Tag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131953826	131953826	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs368980595		P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	195	300	0	ENST00000265335.6:c.3229C>T	p.Arg1077Ter	p.R1077*	ENST00000265335		1077	Cga/Tga																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874215	155874215	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	349	495	1	ENST00000368323.3:c.316C>T	p.Arg106Ter	p.R106*	ENST00000368323	NM_006912.5	106	Cga/Tga																																																																														
RET	5979	MSKCC	GRCh37	10	43606790	43606790	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200334340		P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	330	655	0	ENST00000355710.3:c.1399G>C	p.Val467Leu	p.V467L	ENST00000355710	NM_020975.4	467	Gtg/Ctg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426196	49426196	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1388458596		P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	368	636	0	ENST00000301067.7:c.12292C>T	p.Pro4098Ser	p.P4098S	ENST00000301067	NM_003482.3	4098	Cca/Tca																																																																														
RB1	5925	MSKCC	GRCh37	13	49037968	49037968	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	218	327	1	ENST00000267163.4:c.2209del	p.Glu737ArgfsTer7	p.E737Rfs*7	ENST00000267163	NM_000321.2	736	caG/ca																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726689	88726689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	181	381	0	ENST00000360948.2:c.355C>A	p.Gln119Lys	p.Q119K	ENST00000360948	NM_001012338.2	119	Cag/Aag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52719780	52719780	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	236	444	0	ENST00000322088.6:c.994-2A>G		p.X332_splice	ENST00000322088	NM_014225.5	332																																																																															
BARD1	580	MSKCC	GRCh37	2	215593549	215593549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	365	331	0	ENST00000260947.4:c.2185G>A	p.Asp729Asn	p.D729N	ENST00000260947	NM_000465.2	729	Gat/Aat																																																																														
RAF1	5894	MSKCC	GRCh37	3	12632328	12632328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	313	459	0	ENST00000251849.4:c.1339G>A	p.Asp447Asn	p.D447N	ENST00000251849	NM_002880.3	447	Gac/Aac																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31493367	31493367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	178	311	0	ENST00000344624.3:c.1789C>T	p.His597Tyr	p.H597Y	ENST00000344624		597	Cac/Tac																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652072	36652072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	393	665	1	ENST00000244741.5:c.194G>A	p.Trp65Ter	p.W65*	ENST00000244741	NM_000389.4	65	tGg/tAg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929578	44929578	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	148	161	0	ENST00000377967.4:c.2678C>G	p.Ser893Ter	p.S893*	ENST00000377967	NM_021140.2	893	tCa/tGa																																																																														
BTK	695	MSKCC	GRCh37	X	100604928	100604928	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41300892		P-0036636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	210	196	0	ENST00000308731.7:c.1925C>T	p.Pro642Leu	p.P642L	ENST00000308731	NM_000061.2	642	cCc/cTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115724	8115743	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGGAAGGCATCCAGACC	AGAAGGAAGGCATCCAGACC	-			P-0036826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	52	303	0	ENST00000346208.3:c.1074_1093del	p.Glu359ProfsTer5	p.E359Pfs*5	ENST00000346208		357	aAGAAGGAAGGCATCCAGACC/a																																																																														
TET1	80312	MSKCC	GRCh37	10	70405224	70405224	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	53	413	1	ENST00000373644.4:c.2738C>A	p.Ser913Ter	p.S913*	ENST00000373644	NM_030625.2	913	tCa/tAa																																																																														
CD276	80381	MSKCC	GRCh37	15	73996789	73996789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	82	298	1	ENST00000318443.5:c.1345G>T	p.Ala449Ser	p.A449S	ENST00000318443	NM_001024736.1	449	Gcg/Tcg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4094479	4094479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768826287		P-0036826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	218	672	1	ENST00000262948.5:c.1064C>T	p.Ala355Val	p.A355V	ENST00000262948	NM_030662.3	355	gCg/gTg																																																																														
ALK	238	MSKCC	GRCh37	2	29543713	29543713	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	33	396	0	ENST00000389048.3:c.1450G>C	p.Asp484His	p.D484H	ENST00000389048	NM_004304.4	484	Gat/Cat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286788	212286788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	21	423	0	ENST00000342788.4:c.2908C>G	p.Leu970Val	p.L970V	ENST00000342788	NM_005235.2	970	Ctg/Gtg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631310	117631320	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGGCCTTC	AGCAGGCCTTC	-			P-0036826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	81	356	0	ENST00000368508.3:c.6358_6368del	p.Glu2120ProfsTer20	p.E2120Pfs*20	ENST00000368508	NM_002944.2	2120	GAAGGCCTGCTc/c																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0037021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	51	482	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99192856	99192856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	75	322	0	ENST00000268035.6:c.46C>T	p.Leu16Phe	p.L16F	ENST00000268035	NM_000875.3	16	Ctc/Ttc																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804154	46804154	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0037021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	56	619	0	ENST00000290295.7:c.853T>G	p.Ter285GluextTer32	p.*285Eext*32	ENST00000290295	NM_006361.5	285	Taa/Gaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922961	44923000	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTACCTGCAGCGAAACGCACTCACTCTACCTCATAACC	CCTTACCTGCAGCGAAACGCACTCACTCTACCTCATAACC	-			P-0037021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	68	299	0	ENST00000377967.4:c.1822_1861del	p.Pro608AlafsTer4	p.P608Afs*4	ENST00000377967	NM_021140.2	608	CCTTACCTGCAGCGAAACGCACTCACTCTACCTCATAACCgc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576865	7576865	+	stop_gained	Nonsense_Mutation	SNP	A	A	C	rs879254077		P-0037025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	438	678	0	ENST00000269305.4:c.981T>G	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taT/taG																																																																														
MET	4233	MSKCC	GRCh37	7	116395511	116395526	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGTTCTCCTTGGAA	AGAGTTCTCCTTGGAA	TT			P-0037025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	98	509	0	ENST00000397752.3:c.1804_1819delinsTT	p.Arg602LeufsTer2	p.R602Lfs*2	ENST00000397752	NM_000245.2	602	AGAGTTCTCCTTGGAAat/TTat																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0037065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	284	369	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0037065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	183	439	2	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																														
INSR	3643	MSKCC	GRCh37	19	7117211	7117212	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0037065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	316	705	2	ENST00000302850.5:c.4004_4005del	p.Cys1335SerfsTer68	p.C1335Sfs*68	ENST00000302850	NM_000208.2	1335	tGT/t																																																																														
CIC	23152	MSKCC	GRCh37	19	42797120	42797120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	348	765	0	ENST00000575354.2:c.3482C>G	p.Thr1161Ser	p.T1161S	ENST00000575354	NM_015125.3	1161	aCc/aGc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021635	31021659	+	frameshift_variant	Frame_Shift_Del	DEL	GTCAGTCCTTTCGTAACACAATTGA	GTCAGTCCTTTCGTAACACAATTGA	-			P-0037065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	212	571	0	ENST00000375687.4:c.1634_1658del	p.Arg545GlnfsTer150	p.R545Qfs*150	ENST00000375687	NM_015338.5	545	cGTCAGTCCTTTCGTAACACAATTGAa/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0037085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	301	555	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376681	8376681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	150	442	0	ENST00000356435.5:c.4432G>C	p.Gly1478Arg	p.G1478R	ENST00000356435		1478	Gga/Cga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983797	15983797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	224	429	1	ENST00000268712.3:c.3325G>A	p.Glu1109Lys	p.E1109K	ENST00000268712	NM_006311.3	1109	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046312	69046312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	52	371	1	ENST00000288368.4:c.3785G>T	p.Arg1262Leu	p.R1262L	ENST00000288368	NM_024870.2	1262	cGt/cTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	290	652	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0037096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	558	934	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29559859	29559862	+	frameshift_variant	Frame_Shift_Del	DEL	ACTC	ACTC	-	rs1321848637		P-0037096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	159	308	0	ENST00000358273.4:c.3457_3460del	p.Leu1153MetfsTer4	p.L1153Mfs*4	ENST00000358273	NM_001042492.2	1152	ttACTC/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	96	682	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	68	321	1	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770587	40770587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776338672		P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	790	509	0	ENST00000373198.4:c.2795G>A	p.Arg932His	p.R932H	ENST00000373198	NM_133170.3	932	cGc/cAc																																																																														
AR	367	MSKCC	GRCh37	X	66766357	66766386	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-	rs1420942076		P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	25	163	1	ENST00000374690.3:c.1391_1420del	p.Gly464_Gly473del	p.G464_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741406	17741406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs993043194		P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	246	930	2	ENST00000250003.3:c.77C>T	p.Thr26Met	p.T26M	ENST00000250003	NM_002478.4	26	aCg/aTg																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480589	123480589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	80	584	0	ENST00000371139.4:c.97G>A	p.Asp33Asn	p.D33N	ENST00000371139	NM_001114937.2	33	Gac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112154999	112154999	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	81	527	0	ENST00000257430.4:c.1270C>T	p.Gln424Ter	p.Q424*	ENST00000257430	NM_000038.5	424	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874188	151874194	+	frameshift_variant	Frame_Shift_Del	DEL	TATCATC	TATCATC	-			P-0037115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	84	565	0	ENST00000262189.6:c.8344_8350del	p.Asp2782SerfsTer2	p.D2782Sfs*2	ENST00000262189	NM_170606.2	2782	GATGATAag/ag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0037151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	49	262	1	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464402	120464402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	95	408	0	ENST00000256646.2:c.5244C>G	p.Asn1748Lys	p.N1748K	ENST00000256646	NM_024408.3	1748	aaC/aaG																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717948	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAAAGGTTTGTACTTTACTTTCATTGGGAGAAATATCCAAAATAAGGACAGATTAAAAGCTATATTTTATTTTATGACATGTAAGGAACTATAATTTGTTTTCTATTAGATCTGCAGGTGTTTTGCTTACTCTGGCATTGGTGAGACATTATAAGGGTAAATAATCCTGTTTGAAGG	AAAAAAGGTTTGTACTTTACTTTCATTGGGAGAAATATCCAAAATAAGGACAGATTAAAAGCTATATTTTATTTTATGACATGTAAGGAACTATAATTTGTTTTCTATTAGATCTGCAGGTGTTTTGCTTACTCTGGCATTGGTGAGACATTATAAGGGTAAATAATCCTGTTTGAAGG	-			P-0037151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	14	219	0	ENST00000371953.3:c.799_801+176del		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
ATM	472	MSKCC	GRCh37	11	108173748	108173793	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGTGTGAAGTAAGAAGATTAATTAGTCTGATATAATTCCTTGTTT	ATGTGTGAAGTAAGAAGATTAATTAGTCTGATATAATTCCTTGTTT	-			P-0037151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	33	203	0	ENST00000278616.4:c.5491_5496+40del		p.X1831_splice	ENST00000278616	NM_000051.3	1831																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15302421	15302421	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149307620		P-0037171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1544	219	852	1	ENST00000263388.2:c.850G>A	p.Ala284Thr	p.A284T	ENST00000263388	NM_000435.2	284	Gcc/Acc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137784	64137784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1579	659	920	0	ENST00000334205.4:c.1885C>T	p.Arg629Cys	p.R629C	ENST00000334205	NM_003942.2	629	Cgc/Tgc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504407	186504408	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0037171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	59	545	0	ENST00000323963.5:c.745_746del	p.Gln249ValfsTer4	p.Q249Vfs*4	ENST00000323963		248	aaACag/aaag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	454	821	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94918505	94918505	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	167	552	0	ENST00000536441.1:c.677T>G	p.Leu226Arg	p.L226R	ENST00000536441	NM_144665.3	226	cTa/cGa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061274	38061274	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	501	713	0	ENST00000250448.2:c.715G>C	p.Gly239Arg	p.G239R	ENST00000250448	NM_004496.3	239	Ggc/Cgc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56878477	56878477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	135	433	0	ENST00000308159.5:c.2416G>A	p.Asp806Asn	p.D806N	ENST00000308159	NM_014669.4	806	Gac/Aac																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049712	16049712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	152	533	0	ENST00000268712.3:c.1060G>A	p.Glu354Lys	p.E354K	ENST00000268712	NM_006311.3	354	Gaa/Aaa																																																																														
RRAS	6237	MSKCC	GRCh37	19	50143339	50143339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	27	71	0	ENST00000246792.3:c.17C>T	p.Ala6Val	p.A6V	ENST00000246792	NM_006270.3	6	gCg/gTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022712	31022713	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	G			P-0037177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	175	546	0	ENST00000375687.4:c.2197_2198delinsG	p.Gln733GlyfsTer11	p.Q733Gfs*11	ENST00000375687	NM_015338.5	733	CAg/Gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	251	430	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	576	741	1	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946810	17946810	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs149316157		P-0037198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1459	175	658	1	ENST00000458235.1:c.1837C>T	p.Arg613Ter	p.R613*	ENST00000458235	NM_000215.3	613	Cga/Tga																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239503	123239503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	256	800	0	ENST00000358487.5:c.2334G>C	p.Gln778His	p.Q778H	ENST00000358487	NM_000141.4	778	caG/caC																																																																														
POLE	5426	MSKCC	GRCh37	12	133202314	133202314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	69	645	0	ENST00000320574.5:c.6574G>A	p.Ala2192Thr	p.A2192T	ENST00000320574	NM_006231.2	2192	Gcg/Acg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241666	55241666	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	325	680	38	ENST00000275493.2:c.2114G>T	p.Arg705Met	p.R705M	ENST00000275493	NM_005228.3	705	aGg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	44	570	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	44	644	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713886	30713886	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	39	606	0	ENST00000359013.4:c.1286T>G	p.Leu429Arg	p.L429R	ENST00000359013	NM_001024847.2	429	cTg/cGg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981135	201981135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	266	718	1	ENST00000359651.3:c.214G>T	p.Val72Phe	p.V72F	ENST00000359651		72	Gtt/Ttt																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022522	12022522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762232508		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	204	627	1	ENST00000396373.4:c.628C>T	p.Arg210Cys	p.R210C	ENST00000396373	NM_001987.4	210	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	121	534	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434150	49434150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	227	784	1	ENST00000301067.7:c.7403A>G	p.Lys2468Arg	p.K2468R	ENST00000301067	NM_003482.3	2468	aAg/aGg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482780	67482780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	237	605	1	ENST00000327367.4:c.1184G>T	p.Trp395Leu	p.W395L	ENST00000327367	NM_005902.3	395	tGg/tTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467796	99467796	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	107	395	0	ENST00000268035.6:c.2665G>T	p.Gly889Ter	p.G889*	ENST00000268035	NM_000875.3	889	Gga/Tga																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348830	11348830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	75	201	0	ENST00000332029.2:c.506G>A	p.Arg169His	p.R169H	ENST00000332029	NM_003745.1	169	cGc/cAc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134499	30134499	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs955881745		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	89	265	0	ENST00000263025.4:c.32G>T	p.Gly11Val	p.G11V	ENST00000263025	NM_002746.2	11	gGc/gTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993715	72993715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	187	528	0	ENST00000268489.5:c.330G>T	p.Glu110Asp	p.E110D	ENST00000268489	NM_006885.3	110	gaG/gaT																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222151	2222151	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760542574		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	297	860	0	ENST00000398665.3:c.2983C>T	p.Arg995Trp	p.R995W	ENST00000398665	NM_032482.2	995	Cgg/Tgg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950353	17950353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	249	762	0	ENST00000458235.1:c.1374G>C	p.Trp458Cys	p.W458C	ENST00000458235	NM_000215.3	458	tgG/tgC																																																																														
CIC	23152	MSKCC	GRCh37	19	42797206	42797206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	416	839	1	ENST00000575354.2:c.3568G>A	p.Gly1190Arg	p.G1190R	ENST00000575354	NM_015125.3	1190	Ggg/Agg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918165	50918165	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	210	845	0	ENST00000440232.2:c.2482G>C	p.Gly828Arg	p.G828R	ENST00000440232	NM_002691.3	828	Ggc/Cgc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31380550	31380550	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs770469129		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	142	436	0	ENST00000328111.2:c.1040G>T	p.Gly347Val	p.G347V	ENST00000328111	NM_006892.3	347	gGc/gTc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62324258	62324258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1438	237	828	2	ENST00000508582.2:c.2825C>A	p.Ala942Asp	p.A942D	ENST00000508582		942	gCc/gAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161913	47161913	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	118	490	0	ENST00000409792.3:c.4213A>T	p.Lys1405Ter	p.K1405*	ENST00000409792	NM_014159.6	1405	Aaa/Taa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133466	55133466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	93	430	0	ENST00000257290.5:c.770G>A	p.Gly257Asp	p.G257D	ENST00000257290	NM_006206.4	257	gGc/gAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55599234	55599234	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	31	422	0	ENST00000288135.5:c.2362-2A>G		p.X788_splice	ENST00000288135	NM_000222.2	788																																																																															
KDR	3791	MSKCC	GRCh37	4	55968597	55968597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	216	686	0	ENST00000263923.4:c.2066C>G	p.Thr689Arg	p.T689R	ENST00000263923	NM_002253.2	689	aCg/aGg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532711	187532711	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768440012		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	144	562	1	ENST00000441802.2:c.9682C>T	p.Pro3228Ser	p.P3228S	ENST00000441802	NM_005245.3	3228	Cct/Tct																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31405808	31405808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	113	309	0	ENST00000344624.3:c.3970G>T	p.Ala1324Ser	p.A1324S	ENST00000344624		1324	Gca/Tca																																																																														
APC	324	MSKCC	GRCh37	5	112173801	112173801	+	stop_gained	Nonsense_Mutation	SNP	C	C	G	rs79512956		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	79	405	0	ENST00000257430.4:c.2510C>G	p.Ser837Ter	p.S837*	ENST00000257430	NM_000038.5	837	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112175282	112175282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	106	265	0	ENST00000257430.4:c.3991A>T	p.Arg1331Ter	p.R1331*	ENST00000257430	NM_000038.5	1331	Aga/Tga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046060	180046060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	46	339	0	ENST00000261937.6:c.2811C>A	p.Asn937Lys	p.N937K	ENST00000261937	NM_182925.4	937	aaC/aaA																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046770	180046770	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	193	579	0	ENST00000261937.6:c.2543-1G>C		p.X848_splice	ENST00000261937	NM_182925.4	848																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32190349	32190349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	379	693	0	ENST00000375023.3:c.390G>T	p.Arg130Ser	p.R130S	ENST00000375023	NM_004557.3	130	agG/agT																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87339190	87339190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200636057		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	51	564	0	ENST00000277120.3:c.772G>A	p.Asp258Asn	p.D258N	ENST00000277120		258	Gat/Aat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391964	139391964	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1022510242		P-0037228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	202	798	0	ENST00000277541.6:c.6227C>T	p.Thr2076Ile	p.T2076I	ENST00000277541	NM_017617.3	2076	aCc/aTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	65	180	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913485		P-0037268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1564	426	816	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs483352822		P-0037268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	22	640	0	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797258	135797258	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	98	388	0	ENST00000298552.3:c.611del	p.Arg204LeufsTer6	p.R204Lfs*6	ENST00000298552	NM_001162426.1	204	cGt/ct																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873820	35873820	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	92	307	0	ENST00000216797.5:c.31T>G	p.Trp11Gly	p.W11G	ENST00000216797	NM_020529.2	11	Tgg/Ggg																																																																														
ABL1	25	MSKCC	GRCh37	9	133748274	133748274	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	20	697	0	ENST00000318560.5:c.935A>T	p.Tyr312Phe	p.Y312F	ENST00000318560	NM_005157.4	312	tAt/tTt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593590	55593607	+	inframe_deletion	In_Frame_Del	DEL	GTATGAAGTACAGTGGAA	GTATGAAGTACAGTGGAA	-			P-0037282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	166	239	0	ENST00000288135.5:c.1657_1674del	p.Tyr553_Lys558del	p.Y553_K558del	ENST00000288135	NM_000222.2	552	atGTATGAAGTACAGTGGAAg/atg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	181	457	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	469	806	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	142	320	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	330	482	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871249	12871249	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	80	194	0	ENST00000228872.4:c.475+1G>A		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455118	50455118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200163039		P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	187	391	1	ENST00000331340.3:c.665G>A	p.Arg222His	p.R222H	ENST00000331340	NM_006060.4	222	cGc/cAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508683	106508683	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1490061702		P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	280	630	0	ENST00000359195.3:c.677G>A	p.Arg226His	p.R226H	ENST00000359195	NM_002649.2	226	cGc/cAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280809	41280832	+	stop_lost,inframe_deletion	Nonstop_Mutation	DEL	GGCCTGGTTTGATACTGACCTGTA	GGCCTGGTTTGATACTGACCTGTA	-			P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	31	527	0	ENST00000349496.5:c.2322_2345del	p.AlaTrpPheAspThrAspLeuTer775delextTer?	p.AWFDTDL*775delext*?	ENST00000349496	NM_001904.3	775	ctGGCCTGGTTTGATACTGACCTGTAa/cta																																																																														
TET2	54790	MSKCC	GRCh37	4	106196542	106196542	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	39	496	0	ENST00000380013.4:c.4875T>A	p.Asn1625Lys	p.N1625K	ENST00000380013	NM_001127208.2	1625	aaT/aaA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0037305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	51	506	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0037305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	24	285	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793663		P-0037305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	33	614	1	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519936		P-0037305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	27	381	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
MGA	23269	MSKCC	GRCh37	15	42041308	42041308	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0037305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	73	490	1	ENST00000219905.7:c.5504-1G>A		p.X1835_splice	ENST00000219905	NM_001164273.1	1835																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247183	153247183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	62	269	0	ENST00000281708.4:c.1619A>G	p.His540Arg	p.H540R	ENST00000281708	NM_033632.3	540	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	60	246	2	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67459188	67459188	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760091844		P-0037327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	79	464	0	ENST00000327367.4:c.604G>A	p.Ala202Thr	p.A202T	ENST00000327367	NM_005902.3	202	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579529	7579530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	142	746	0	ENST00000269305.4:c.157dup	p.Trp53LeufsTer4	p.W53Lfs*4	ENST00000269305	NM_001126112.2	53	tgg/tTgg																																																																														
MSH3	4437	MSKCC	GRCh37	5	80171584	80171584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	38	417	0	ENST00000265081.6:c.3317A>G	p.Tyr1106Cys	p.Y1106C	ENST00000265081	NM_002439.4	1106	tAt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	237	439	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	144	476	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575080	48575080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	111	318	0	ENST00000342988.3:c.274C>T	p.His92Tyr	p.H92Y	ENST00000342988	NM_005359.5	92	Cat/Tat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472523	88472523	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1419472052		P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	165	511	0	ENST00000360948.2:c.2032C>T	p.Arg678Ter	p.R678*	ENST00000360948	NM_001012338.2	678	Cga/Tga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651532	52651532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	133	473	0	ENST00000394830.3:c.1564C>T	p.Arg522Ter	p.R522*	ENST00000394830	NM_018313.4	522	Cga/Tga																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176330	24176330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	225	543	0	ENST00000263121.7:c.1121G>C	p.Arg374Pro	p.R374P	ENST00000263121	NM_003073.3	374	cGg/cCg																																																																														
AXL	558	MSKCC	GRCh37	19	41727152	41727153	+	splice_donor_variant	Splice_Site	DNP	GT	GT	AA			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	173	519	1	ENST00000301178.4:c.409+1_409+2delinsAA		p.X137_splice	ENST00000301178	NM_021913.4	137																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41408864	41408864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	101	293	0	ENST00000373198.4:c.562C>A	p.Pro188Thr	p.P188T	ENST00000373198	NM_133170.3	188	Cca/Aca																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589012	67589594	+	splice_donor_variant,splice_acceptor_variant,stop_lost,protein_altering_variant,intron_variant	Splice_Site	DEL	ATACTCTTACACTAAGGTAAGCCAGGGAATATAGCTGAAATTAGGGTTTTGGGCTGATATTAAAACATATTTCCTTATTCCAAAATGTTAATACCTTTATTTTTATATTGTTTTTACAGGAAAGGGGGAAATAACAAATTAATCAAAATATTTCATCGAGATGGGAAATATGGCTTCTCTGACCCATTAACCTTCAGTTCTGTGGTTGAATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGTTACGATGTTTAGACAAGATCCTTTTAATACTTAGAAAACATTTGAAGCAGATGAATTACATGTAATCAAGTCTAAAAAACTTGACACTCGTAATTACATAATTGCAATTTTAAAGATGTTTCCATGTCAGCTATTTTGTTAAACAATTGTTATTTGATTAAATACCTTATCCATTGAATTTATTTTAATCTTTCTAGGATCAAGTTGTCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATA	ATACTCTTACACTAAGGTAAGCCAGGGAATATAGCTGAAATTAGGGTTTTGGGCTGATATTAAAACATATTTCCTTATTCCAAAATGTTAATACCTTTATTTTTATATTGTTTTTACAGGAAAGGGGGAAATAACAAATTAATCAAAATATTTCATCGAGATGGGAAATATGGCTTCTCTGACCCATTAACCTTCAGTTCTGTGGTTGAATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGTTACGATGTTTAGACAAGATCCTTTTAATACTTAGAAAACATTTGAAGCAGATGAATTACATGTAATCAAGTCTAAAAAACTTGACACTCGTAATTACATAATTGCAATTTTAAAGATGTTTCCATGTCAGCTATTTTGTTAAACAATTGTTATTTGATTAAATACCTTATCCATTGAATTTATTTTAATCTTTCTAGGATCAAGTTGTCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATA	-			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	79	208	0	ENST00000274335.5:c.1104_1358del		p.X368_splice	ENST00000274335		368	tATACTCTTACACTAAGGTAAGCCAGGGAATATAGCTGAAATTAGGGTTTTGGGCTGATATTAAAACATATTTCCTTATTCCAAAATGTTAATACCTTTATTTTTATATTGTTTTTACAGGAAAGGGGGAAATAACAAATTAATCAAAATATTTCATCGAGATGGGAAATATGGCTTCTCTGACCCATTAACCTTCAGTTCTGTGGTTGAATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGTTACGATGTTTAGACAAGATCCTTTTAATACTTAGAAAACATTTGAAGCAGATGAATTACATGTAATCAAGTCTAAAAAACTTGACACTCGTAATTACATAATTGCAATTTTAAAGATGTTTCCATGTCAGCTATTTTGTTAAACAATTGTTATTTGATTAAATACCTTATCCATTGAATTTATTTTAATCTTTCTAGGATCAAGTTGTCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAac/tac																																																																														
APC	324	MSKCC	GRCh37	5	112151271	112151271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	93	301	0	ENST00000257430.4:c.914C>A	p.Thr305Lys	p.T305K	ENST00000257430	NM_000038.5	305	aCa/aAa																																																																														
APC	324	MSKCC	GRCh37	5	112174979	112174979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs863225344		P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	71	198	0	ENST00000257430.4:c.3688C>T	p.Gln1230Ter	p.Q1230*	ENST00000257430	NM_000038.5	1230	Cag/Tag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38139056	38139056	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	135	547	0	ENST00000317025.8:c.3547G>T	p.Glu1183Ter	p.E1183*	ENST00000317025	NM_023034.1	1183	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	95	409	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	154	628	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																														
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs786204170		P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	131	348	0	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925334	114925334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	50	437	0	ENST00000543371.1:c.1412G>A	p.Arg471His	p.R471H	ENST00000543371	NM_001198531.1	471	cGc/cAc																																																																														
WT1	7490	MSKCC	GRCh37	11	32456767	32456767	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	28	515	0	ENST00000332351.3:c.125A>C	p.Lys42Thr	p.K42T	ENST00000332351	NM_024426.4	42	aAg/aCg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41222965	41222965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	159	645	0	ENST00000357654.3:c.4966G>T	p.Gly1656Cys	p.G1656C	ENST00000357654	NM_007294.3	1656	Ggc/Tgc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149501557	149501557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	63	525	0	ENST00000261799.4:c.2230A>G	p.Ser744Gly	p.S744G	ENST00000261799	NM_002609.3	744	Agc/Ggc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55231433	55231433	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1427028322		P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	108	493	0	ENST00000275493.2:c.1639A>G	p.Arg547Gly	p.R547G	ENST00000275493	NM_005228.3	547	Agg/Ggg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331663	8331663	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	126	486	1	ENST00000356435.5:c.5453A>T	p.Glu1818Val	p.E1818V	ENST00000356435		1818	gAa/gTa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643504	38643504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1238094530		P-0037373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	80	407	0	ENST00000299084.4:c.974G>A	p.Arg325Gln	p.R325Q	ENST00000299084	NM_152594.2	325	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579347	7579348	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0037373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	339	588	0	ENST00000269305.4:c.339_340del	p.Leu114AlafsTer34	p.L114Afs*34	ENST00000269305	NM_001126112.2	113	ttCTtg/tttg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246849	10246849	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1422	89	704	0	ENST00000340748.4:c.4556G>A	p.Trp1519Ter	p.W1519*	ENST00000340748		1519	tGg/tAg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17389694	17389694	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	72	719	0	ENST00000359435.4:c.827C>G	p.Thr276Ser	p.T276S	ENST00000359435	NM_001033549.1	276	aCc/aGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0037375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	253	579	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910887	32910887	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	129	361	0	ENST00000380152.3:c.2397del	p.Gly800ValfsTer10	p.G800Vfs*10	ENST00000380152		799	Aaa/aa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437800	52437800	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1165855820		P-0037375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	294	738	0	ENST00000460680.1:c.1361A>T	p.Glu454Val	p.E454V	ENST00000460680	NM_004656.3	454	gAg/gTg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412463	80412463	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	123	280	0	ENST00000286548.4:c.578C>G	p.Pro193Arg	p.P193R	ENST00000286548	NM_002072.3	193	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0037510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	22	538	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0037510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	11	94	0	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0037510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	19	480	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	216	473	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578397	7578397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	127	566	0	ENST00000269305.4:c.533A>C	p.His178Pro	p.H178P	ENST00000269305	NM_001126112.2	178	cAc/cCc																																																																														
LMO1	4004	MSKCC	GRCh37	11	8246219	8246219	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	49	519	0	ENST00000335790.3:c.415C>T	p.Gln139Ter	p.Q139*	ENST00000335790	NM_002315.2	139	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0037537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	69	617	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0037537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	81	385	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129487	152129487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	44	152	0	ENST00000206249.3:c.440C>T	p.Pro147Leu	p.P147L	ENST00000206249	NM_000125.3	147	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	68	398	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0037573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	76	423	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45422959	45422959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	55	340	0	ENST00000262160.6:c.169C>T	p.Arg57Ter	p.R57*	ENST00000262160	NM_005901.5	57	Cga/Tga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484780	57484780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	74	499	0	ENST00000371085.3:c.760A>G	p.Asn254Asp	p.N254D	ENST00000371085	NM_000516.4	254	Aac/Gac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259296	89259296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	43	392	0	ENST00000336596.2:c.440C>A	p.Ala147Glu	p.A147E	ENST00000336596	NM_005233.5	147	gCa/gAa																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39322567	39322567	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	39	347	0	ENST00000373001.3:c.425A>C	p.Tyr142Ser	p.Y142S	ENST00000373001	NM_022157.3	142	tAc/tCc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711861	89711875	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTGTCCACCAGG	TTTCTGTCCACCAGG	-			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	106	303	0	ENST00000371953.3:c.493-14_493del		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	79	303	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066772	30066772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	81	353	0	ENST00000331968.5:c.2359G>A	p.Glu787Lys	p.E787K	ENST00000331968	NM_002742.2	787	Gaa/Aaa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715615	30715615	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs104893817		P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	100	208	0	ENST00000359013.4:c.1348A>G	p.Met450Val	p.M450V	ENST00000359013	NM_001024847.2	450	Atg/Gtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	101	438	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185165587	185165587	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	56	210	0	ENST00000265026.3:c.862A>G	p.Thr288Ala	p.T288A	ENST00000265026	NM_004721.4	288	Acc/Gcc																																																																														
APC	324	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	60	238	0	ENST00000257430.4:c.2544dup	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	44	226	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
APC	324	MSKCC	GRCh37	5	112178717	112178717	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	69	309	0	ENST00000257430.4:c.7426A>G	p.Arg2476Gly	p.R2476G	ENST00000257430	NM_000038.5	2476	Agg/Ggg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484335	8484335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749208350		P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	33	335	0	ENST00000356435.5:c.3197G>A	p.Arg1066Gln	p.R1066Q	ENST00000356435		1066	cGa/cAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410124	63410124	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	186	547	0	ENST00000330258.3:c.3043G>T	p.Glu1015Ter	p.E1015*	ENST00000330258	NM_152424.3	1015	Gaa/Taa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs879499034		P-0037751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	181	441	1	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																																																														
CDK4	1019	MSKCC	GRCh37	12	58143273	58143273	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	15	339	0	ENST00000257904.6:c.647G>C	p.Gly216Ala	p.G216A	ENST00000257904	NM_000075.3	216	gGa/gCa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56183259	56183259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	21	510	0	ENST00000399503.3:c.4169G>A	p.Gly1390Glu	p.G1390E	ENST00000399503	NM_005921.1	1390	gGa/gAa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	50	611	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966675	44966675	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	13	162	0	ENST00000377967.4:c.3899T>C	p.Leu1300Pro	p.L1300P	ENST00000377967	NM_021140.2	1300	cTg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs863224451		P-0037905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	465	551	1	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118359386	118359386	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	107	297	0	ENST00000534358.1:c.4390G>T	p.Glu1464Ter	p.E1464*	ENST00000534358	NM_005933.3	1464	Gag/Tag																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800491	32800492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTT			P-0037905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	243	733	0	ENST00000374899.4:c.1052_1055dup	p.Cys353SerfsTer5	p.C353Sfs*5	ENST00000374899	NM_018833.2	352	gtc/gtAAGTc																																																																														
TEK	7010	MSKCC	GRCh37	9	27209227	27209227	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs765053701		P-0037905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	11	330	0	ENST00000380036.4:c.2684G>A	p.Arg895Gln	p.R895Q	ENST00000380036	NM_000459.3	895	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	108	378	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	52	387	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	39	222	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	64	346	0	ENST00000274335.5:c.1718T>C	p.Leu573Pro	p.L573P	ENST00000274335		573	cTg/cCg																																																																														
MGA	23269	MSKCC	GRCh37	15	41961688	41961688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	97	460	0	ENST00000219905.7:c.596G>A	p.Arg199His	p.R199H	ENST00000219905	NM_001164273.1	199	cGt/cAt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26956950	26956950	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	96	227	0	ENST00000381527.3:c.457-1G>T		p.X153_splice	ENST00000381527	NM_001260.1	153																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332763	153332763	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	186	511	0	ENST00000281708.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000281708	NM_033632.3	65	Aga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86633858	86633858	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	73	344	1	ENST00000274376.6:c.967T>G	p.Leu323Val	p.L323V	ENST00000274376	NM_002890.2	323	Tta/Gta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	10	126	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs397517201		P-0038350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	37	624	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0038350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	58	658	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983086	201983086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	50	692	0	ENST00000359651.3:c.935C>G	p.Ala312Gly	p.A312G	ENST00000359651		312	gCc/gGc																																																																														
INSR	3643	MSKCC	GRCh37	19	7143079	7143079	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	41	575	0	ENST00000302850.5:c.2290C>G	p.Leu764Val	p.L764V	ENST00000302850	NM_000208.2	764	Ctt/Gtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	118	532	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	60	471	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175182	112175182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	64	282	0	ENST00000257430.4:c.3892del	p.Ser1298LeufsTer7	p.S1298Lfs*7	ENST00000257430	NM_000038.5	1297	gaT/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	192	810	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720964	176720964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	81	637	1	ENST00000439151.2:c.6595C>T	p.Arg2199Cys	p.R2199C	ENST00000439151	NM_022455.4	2199	Cgt/Tgt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32814909	32814909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121917702		P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	110	838	0	ENST00000354258.4:c.2156G>A	p.Arg719Gln	p.R719Q	ENST00000354258	NM_000593.5	719	cGg/cAg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885329	111885329	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	56	492	0	ENST00000341259.2:c.1217A>T	p.Asn406Ile	p.N406I	ENST00000341259	NM_005475.2	406	aAc/aTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0039119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	142	362	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427647	49427647	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	178	452	0	ENST00000301067.7:c.10841C>G	p.Ser3614Ter	p.S3614*	ENST00000301067	NM_003482.3	3614	tCa/tGa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247190	153247190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	139	300	0	ENST00000281708.4:c.1612C>T	p.Gln538Ter	p.Q538*	ENST00000281708	NM_033632.3	538	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434348	49434348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	305	661	0	ENST00000301067.7:c.7205C>A	p.Ser2402Ter	p.S2402*	ENST00000301067	NM_003482.3	2402	tCa/tAa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866288	42866288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	195	483	1	ENST00000398585.3:c.344C>A	p.Thr115Asn	p.T115N	ENST00000398585	NM_001135099.1	115	aCc/aAc																																																																														
RHOA	387	MSKCC	GRCh37	3	49400017	49400017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	197	484	0	ENST00000418115.1:c.320G>A	p.Cys107Tyr	p.C107Y	ENST00000418115	NM_001664.2	107	tGt/tAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131925503	131925503	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	118	286	0	ENST00000265335.6:c.1426G>C	p.Glu476Gln	p.E476Q	ENST00000265335		476	Gaa/Caa																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197301	26197301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	37	461	1	ENST00000356476.2:c.178G>A	p.Glu60Lys	p.E60K	ENST00000356476		60	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151847995	151847995	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	16	174	0	ENST00000262189.6:c.12764C>G	p.Ser4255Ter	p.S4255*	ENST00000262189	NM_170606.2	4255	tCa/tGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151882717	151882717	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0039119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	44	166	0	ENST00000262189.6:c.5009-1G>C		p.X1670_splice	ENST00000262189	NM_170606.2	1670																																																																															
CD274	29126	MSKCC	GRCh37	9	5463075	5463075	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	103	217	0	ENST00000381577.3:c.636G>C	p.Arg212Ser	p.R212S	ENST00000381577	NM_014143.3	212	agG/agC																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179180	123179180	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	161	162	0	ENST00000218089.9:c.629C>G	p.Ser210Ter	p.S210*	ENST00000218089	NM_001042749.1	210	tCa/tGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	82	315	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	999	MSKCC	GRCh37	16	68771321	68771321	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs878854691		P-0039302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	50	270	0	ENST00000261769.5:c.3G>A	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	atG/atA																																																																														
RHOA	387	MSKCC	GRCh37	3	49405969	49405969	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	96	426	0	ENST00000418115.1:c.169T>G	p.Leu57Val	p.L57V	ENST00000418115	NM_001664.2	57	Ttg/Gtg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615812	1615812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771807324		P-0039302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	237	408	2	ENST00000344749.5:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000344749	NM_001136139.2	487	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117878	70117888	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGGCGGC	GCGCAGGCGGC	-			P-0039302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	135	447	0	ENST00000245479.2:c.353_363del	p.Ala118GlufsTer130	p.A118Efs*130	ENST00000245479	NM_000346.3	116	GCGCAGGCGGCg/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107183	27107184	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTTG			P-0039302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	137	440	0	ENST00000324856.7:c.6795_6798dup	p.Met2267ValfsTer12	p.M2267Vfs*12	ENST00000324856	NM_006015.4	2265	ccg/ccGTTGg																																																																														
MPL	4352	MSKCC	GRCh37	1	43805039	43805039	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	244	595	0	ENST00000372470.3:c.491del	p.Phe164SerfsTer2	p.F164Sfs*2	ENST00000372470	NM_005373.2	163	gaT/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	189	457	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120130	70120130	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	182	188	0	ENST00000245479.2:c.1132C>T	p.Gln378Ter	p.Q378*	ENST00000245479	NM_000346.3	378	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937410	178937410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	56	109	0	ENST00000263967.3:c.1798G>A	p.Glu600Lys	p.E600K	ENST00000263967	NM_006218.2	600	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112111435	112111435	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	90	251	0	ENST00000257430.4:c.531+1G>A		p.X177_splice	ENST00000257430	NM_000038.5	177																																																																															
APC	324	MSKCC	GRCh37	5	112175634	112175634	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	148	392	0	ENST00000257430.4:c.4344del	p.Lys1449SerfsTer24	p.K1449Sfs*24	ENST00000257430	NM_000038.5	1448	aCc/ac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670590	30670590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	224	539	0	ENST00000376406.3:c.5930A>G	p.Lys1977Arg	p.K1977R	ENST00000376406	NM_014641.2	1977	aAg/aGg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265368	152265368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	219	469	0	ENST00000206249.3:c.821G>A	p.Gly274Glu	p.G274E	ENST00000206249	NM_000125.3	274	gGg/gAg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157488190	157488190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34786733		P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	243	508	0	ENST00000346085.5:c.2896G>A	p.Gly966Ser	p.G966S	ENST00000346085	NM_020732.3	966	Ggc/Agc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894987	101894987	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	142	252	1	ENST00000374994.4:c.540A>T	p.Leu180Phe	p.L180F	ENST00000374994	NM_004612.2	180	ttA/ttT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412755	63412755	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	235	552	0	ENST00000330258.3:c.412G>T	p.Glu138Ter	p.E138*	ENST00000330258	NM_152424.3	138	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0039414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	202	784	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913517		P-0039414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	212	423	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28934573		P-0039419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	375	628	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786767	3786767	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	337	528	1	ENST00000262367.5:c.4444T>A	p.Tyr1482Asn	p.Y1482N	ENST00000262367	NM_004380.2	1482	Tac/Aac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925325	114925326	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	229	469	0	ENST00000543371.1:c.1404dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	468	aag/aaGg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696410	47696410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	284	508	0	ENST00000347630.2:c.413G>T	p.Arg138Leu	p.R138L	ENST00000347630	NM_001007230.1	138	cGt/cTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306550	41306550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	323	542	1	ENST00000373198.4:c.1109C>A	p.Thr370Lys	p.T370K	ENST00000373198	NM_133170.3	370	aCg/aAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189456486	189456486	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	252	381	0	ENST00000264731.3:c.247G>C	p.Asp83His	p.D83H	ENST00000264731	NM_003722.4	83	Gat/Cat																																																																														
TET2	54790	MSKCC	GRCh37	4	106157583	106157583	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	153	317	0	ENST00000380013.4:c.2484C>A	p.Cys828Ter	p.C828*	ENST00000380013	NM_001127208.2	828	tgC/tgA																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925325	114925325	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1255971088		P-0039419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	34	470	0	ENST00000543371.1:c.1403A>G	p.Lys468Arg	p.K468R	ENST00000543371	NM_001198531.1	468	aAg/aGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	27	328	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	23	588	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175891	112175891	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	15	172	0	ENST00000257430.4:c.4602del	p.Asn1535MetfsTer30	p.N1535Mfs*30	ENST00000257430	NM_000038.5	1534	Ggg/gg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	33	332	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660556		P-0039424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	18	335	0	ENST00000342988.3:c.1088G>A	p.Cys363Tyr	p.C363Y	ENST00000342988	NM_005359.5	363	tGt/tAt																																																																														
HIST2H3D	653604	MSKCC	GRCh37	1	149784845	149784845	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	17	223	0	ENST00000331491.1:c.392T>C	p.Ile131Thr	p.I131T	ENST00000331491	NM_001123375.2	131	aTc/aCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0039513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	673	789	4	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882959	89882959	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs761341952		P-0039513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	316	292	0	ENST00000389301.3:c.65G>A	p.Trp22Ter	p.W22*	ENST00000389301	NM_000135.2	22	tGg/tAg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983065	201983067	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0039513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1329	794	1020	0	ENST00000359651.3:c.915_917del	p.Phe305del	p.F305del	ENST00000359651		305	tTCCtg/ttg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923483	9923483	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	415	614	0	ENST00000330684.3:c.1804G>T	p.Gly602Ter	p.G602*	ENST00000330684	NM_001134407.1	602	Gga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584607	48584607	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	310	466	0	ENST00000342988.3:c.780C>G	p.Tyr260Ter	p.Y260*	ENST00000342988	NM_005359.5	260	taC/taG																																																																														
EP300	2033	MSKCC	GRCh37	22	41568593	41568593	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	402	651	0	ENST00000263253.7:c.4543G>C	p.Glu1515Gln	p.E1515Q	ENST00000263253	NM_001429.3	1515	Gaa/Caa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11210194	11210194	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs995332350		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	14	525	0	ENST00000361445.4:c.4559C>T	p.Ala1520Val	p.A1520V	ENST00000361445	NM_004958.3	1520	gCa/gTa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	16	380	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1181132297		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	11	354	1	ENST00000342505.4:c.1016del	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874164	155874164	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1213963509		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	12	674	0	ENST00000368323.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000368323	NM_006912.5	123	Cgt/Tgt																																																																														
CBL	867	MSKCC	GRCh37	11	119156107	119156107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	31	646	0	ENST00000264033.4:c.1772T>C	p.Leu591Pro	p.L591P	ENST00000264033	NM_005188.3	591	cTg/cCg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	32	807	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
POLE	5426	MSKCC	GRCh37	12	133219536	133219536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	170	698	0	ENST00000320574.5:c.4598A>G	p.Glu1533Gly	p.E1533G	ENST00000320574	NM_006231.2	1533	gAg/gGg																																																																														
POLE	5426	MSKCC	GRCh37	12	133219838	133219838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142508245		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	141	621	0	ENST00000320574.5:c.4523G>A	p.Arg1508His	p.R1508H	ENST00000320574	NM_006231.2	1508	cGc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944594	32944594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	29	528	0	ENST00000380152.3:c.8387C>A	p.Pro2796His	p.P2796H	ENST00000380152		2796	cCt/cAt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95573958	95573958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1256068472		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	50	269	0	ENST00000343455.3:c.2791G>A	p.Val931Ile	p.V931I	ENST00000343455	NM_177438.2	931	Gtt/Att																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273878	10273878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	204	688	1	ENST00000330684.3:c.391G>A	p.Ala131Thr	p.A131T	ENST00000330684	NM_001134407.1	131	Gca/Aca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831069	72831069	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	100	455	0	ENST00000268489.5:c.5512C>T	p.Gln1838Ter	p.Q1838*	ENST00000268489	NM_006885.3	1838	Cag/Tag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs193920894		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	32	498	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	192	724	2	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	18	439	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123722	11123722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1263140481		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	28	598	0	ENST00000344626.4:c.2372C>T	p.Ala791Val	p.A791V	ENST00000344626	NM_003072.3	791	gCg/gTg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	96	510	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940111	49940112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760002850		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	199	660	0	ENST00000296474.3:c.931dup	p.Ala311GlyfsTer26	p.A311Gfs*26	ENST00000296474	NM_002447.2	311	gcc/gGcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	18	361	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166497	32166497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	22	632	0	ENST00000375023.3:c.4546C>T	p.Pro1516Ser	p.P1516S	ENST00000375023	NM_004557.3	1516	Cca/Tca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527516	157527516	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	10	560	0	ENST00000346085.5:c.5241T>G	p.Asp1747Glu	p.D1747E	ENST00000346085	NM_020732.3	1747	gaT/gaG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874463	151874463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	15	422	0	ENST00000262189.6:c.8075A>G	p.Asp2692Gly	p.D2692G	ENST00000262189	NM_170606.2	2692	gAt/gGt																																																																														
ARAF	369	MSKCC	GRCh37	X	47426094	47426094	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	44	405	0	ENST00000377045.4:c.619del	p.Leu207TyrfsTer85	p.L207Yfs*85	ENST00000377045	NM_001654.4	205	gCc/gc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411366	63411366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6	33	340	0	ENST00000330258.3:c.1801C>T	p.Arg601Ter	p.R601*	ENST00000330258	NM_152424.3	601	Cga/Tga																																																																														
AR	367	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6	30	273	0	ENST00000374690.3:c.2226G>T	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgT																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633500	3633500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199969428		P-0039567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	356	663	0	ENST00000294008.3:c.4751G>A	p.Arg1584His	p.R1584H	ENST00000294008	NM_032444.2	1584	cGc/cAc																																																																														
NF2	4771	MSKCC	GRCh37	22	30074313	30074313	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0039567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	201	329	0	ENST00000338641.4:c.1574+1G>T		p.X525_splice	ENST00000338641	NM_000268.3	525																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437449	52437462	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAGCACCCCATC	CTCAGCACCCCATC	-			P-0039567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	252	546	0	ENST00000460680.1:c.1699_1712del	p.Asp567SerfsTer71	p.D567Sfs*71	ENST00000460680	NM_004656.3	567	GATGGGGTGCTGAGt/t																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442509	52442509	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	339	446	0	ENST00000460680.1:c.236del	p.Asn79ThrfsTer8	p.N79Tfs*8	ENST00000460680	NM_004656.3	79	aAc/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	216	437	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	33	404	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	128	318	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769408892		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	60	512	0	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864800	117864800	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs905123790		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	165	348	0	ENST00000297338.2:c.1309C>T	p.Arg437Cys	p.R437C	ENST00000297338	NM_006265.2	437	Cgt/Tgt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1477809102		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	177	463	0	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																															
APC	324	MSKCC	GRCh37	5	112175641	112175641	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	184	368	0	ENST00000257430.4:c.4350del	p.Glu1451LysfsTer22	p.E1451Kfs*22	ENST00000257430	NM_000038.5	1450	cgA/cg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862766	9862766	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746978701		P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	285	667	1	ENST00000330684.3:c.2537G>A	p.Arg846His	p.R846H	ENST00000330684	NM_001134407.1	846	cGc/cAc																																																																														
ATM	472	MSKCC	GRCh37	11	108186839	108186839	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	121	328	0	ENST00000278616.4:c.6197A>G	p.Gln2066Arg	p.Q2066R	ENST00000278616	NM_000051.3	2066	cAg/cGg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368252	45368252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	24	438	0	ENST00000262160.6:c.1350C>A	p.Asp450Glu	p.D450E	ENST00000262160	NM_005901.5	450	gaC/gaA																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553245	106553245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	189	616	0	ENST00000369096.4:c.1210C>G	p.Pro404Ala	p.P404A	ENST00000369096	NM_001198.3	404	Ccc/Gcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	52	358	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11984848	11984848	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	128	330	0	ENST00000353533.5:c.393+1G>A		p.X131_splice	ENST00000353533	NM_003010.3	131																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	158	408	1	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	158	408	1	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	158	408	1	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
TP53	7157	MSKCC	GRCh37	17	7577561	7577561	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	203	527	0	ENST00000269305.4:c.720T>A	p.Ser240Arg	p.S240R	ENST00000269305	NM_001126112.2	240	agT/agA																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115280675	115280675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	71	394	0	ENST00000438362.2:c.356T>C	p.Val119Ala	p.V119A	ENST00000438362	NM_001242891.1	119	gTa/gCa																																																																														
RET	5979	MSKCC	GRCh37	10	43604650	43604650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	79	567	0	ENST00000355710.3:c.1235T>C	p.Val412Ala	p.V412A	ENST00000355710	NM_020975.4	412	gTg/gCg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603127	48603127	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	63	388	0	ENST00000342988.3:c.1428del	p.Gly477GlufsTer2	p.G477Efs*2	ENST00000342988	NM_005359.5	476	ggT/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0039864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	133	395	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0039864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	44	364	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0039864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	48	255	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0039864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	122	744	0	ENST00000269305.4:c.792_794del	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028610	12028610	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0039864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	88	361	0	ENST00000353533.5:c.814-1G>A		p.X272_splice	ENST00000353533	NM_003010.3	272																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662577	227662577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746823533		P-0039864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	137	676	0	ENST00000305123.5:c.878C>T	p.Pro293Leu	p.P293L	ENST00000305123	NM_005544.2	293	cCg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099479	27099479	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0039886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	39	376	0	ENST00000324856.7:c.3715+1G>T		p.X1239_splice	ENST00000324856	NM_006015.4	1239																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	70	636	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933726	36933726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	43	805	0	ENST00000361632.4:c.1673C>T	p.Pro558Leu	p.P558L	ENST00000361632		558	cCc/cTc																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	22	510	3	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	29	480	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123263415	123263415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757125418		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	28	569	0	ENST00000358487.5:c.1328C>T	p.Pro443Leu	p.P443L	ENST00000358487	NM_000141.4	443	cCg/cTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136031	64136031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	47	749	1	ENST00000334205.4:c.1292G>A	p.Arg431His	p.R431H	ENST00000334205	NM_003942.2	431	cGc/cAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138824	64138824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	35	779	1	ENST00000334205.4:c.2191C>T	p.Arg731Trp	p.R731W	ENST00000334205	NM_003942.2	731	Cgg/Tgg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572546	64572546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	33	731	0	ENST00000337652.1:c.1325C>T	p.Ala442Val	p.A442V	ENST00000337652	NM_130803.2	442	gCc/gTc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944191	71944191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	23	621	0	ENST00000298229.2:c.2024A>T	p.Lys675Met	p.K675M	ENST00000298229	NM_001567.3	675	aAg/aTg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	38	461	2	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
KDM5A	5927	MSKCC	GRCh37	12	417050	417050	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199716528		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	14	384	0	ENST00000399788.2:c.3500G>A	p.Arg1167His	p.R1167H	ENST00000399788	NM_001042603.1	1167	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	69	493	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425931	49425931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	52	820	0	ENST00000301067.7:c.12557C>A	p.Pro4186His	p.P4186H	ENST00000301067	NM_003482.3	4186	cCt/cAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133225574	133225574	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	79	755	1	ENST00000320574.5:c.4090del	p.Arg1364ValfsTer5	p.R1364Vfs*5	ENST00000320574	NM_006231.2	1364	Cgt/gt																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134102	41134102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1218589643		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	48	503	0	ENST00000379561.5:c.1526G>A	p.Ser509Asn	p.S509N	ENST00000379561	NM_002015.3	509	aGc/aAc																																																																														
MGA	23269	MSKCC	GRCh37	15	41988284	41988284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	37	572	0	ENST00000219905.7:c.1076G>T	p.Ser359Ile	p.S359I	ENST00000219905	NM_001164273.1	359	aGc/aTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134972	2134972	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	17	848	0	ENST00000219476.3:c.4514A>G	p.Tyr1505Cys	p.Y1505C	ENST00000219476	NM_000548.3	1505	tAc/tGc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781901	3781903	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs751071525		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	57	644	0	ENST00000262367.5:c.4764_4766del	p.Lys1588del	p.K1588del	ENST00000262367	NM_004380.2	1588	aaGAAc/aac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900384	3900384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146887252		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	25	702	0	ENST00000262367.5:c.712G>A	p.Val238Met	p.V238M	ENST00000262367	NM_004380.2	238	Gtg/Atg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943716	9943716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	64	839	0	ENST00000330684.3:c.1225G>A	p.Val409Ile	p.V409I	ENST00000330684	NM_001134407.1	409	Gtc/Atc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943779	9943779	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1211198789		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	70	640	0	ENST00000330684.3:c.1162G>A	p.Ala388Thr	p.A388T	ENST00000330684	NM_001134407.1	388	Gcc/Acc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50828228	50828228	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	33	499	0	ENST00000398568.2:c.2566A>C	p.Met856Leu	p.M856L	ENST00000398568	NM_001042412.1	856	Atg/Ctg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	36	923	3	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	38	748	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435732	56435732	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs775121749		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	45	618	0	ENST00000407977.2:c.1405G>T	p.Gly469Trp	p.G469W	ENST00000407977		469	Ggg/Tgg																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526472	66526472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	26	505	1	ENST00000358598.2:c.1028G>A	p.Gly343Asp	p.G343D	ENST00000358598	NM_212471.2	343	gGc/gAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	24	709	0	ENST00000245479.2:c.782_783insT	p.Glu261AspfsTer35	p.E261Dfs*35	ENST00000245479	NM_000346.3	261	gag/gaTg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1627411	1627411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377688933		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	58	782	3	ENST00000344749.5:c.313C>T	p.Arg105Trp	p.R105W	ENST00000344749	NM_001136139.2	105	Cgg/Tgg																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626892	14626892	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	92	701	0	ENST00000254322.2:c.883C>T	p.Arg295Ter	p.R295*	ENST00000254322	NM_006145.1	295	Cga/Tga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350553	15350553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	19	772	4	ENST00000263377.2:c.3362G>A	p.Arg1121His	p.R1121H	ENST00000263377	NM_058243.2	1121	cGc/cAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375538	15375538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	57	858	0	ENST00000263377.2:c.889C>A	p.Pro297Thr	p.P297T	ENST00000263377	NM_058243.2	297	Ccc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228979	36228979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	42	746	1	ENST00000222270.7:c.7759C>T	p.Arg2587Ter	p.R2587*	ENST00000222270	NM_014727.1	2587	Cga/Tga																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	57	705	6	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25982440	25982440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	80	400	0	ENST00000435504.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000435504		284	Cga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027019	48027019	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	36	460	0	ENST00000234420.5:c.1897A>C	p.Thr633Pro	p.T633P	ENST00000234420	NM_000179.2	633	Act/Cct																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	37	535	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190708721	190708721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	53	482	0	ENST00000441310.2:c.614A>G	p.Asp205Gly	p.D205G	ENST00000441310	NM_000534.4	205	gAt/gGt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661836	227661836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs577407654		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	23	968	3	ENST00000305123.5:c.1619C>T	p.Pro540Leu	p.P540L	ENST00000305123	NM_005544.2	540	cCg/cTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023375	31023375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	23	574	0	ENST00000375687.4:c.2860G>A	p.Asp954Asn	p.D954N	ENST00000375687	NM_015338.5	954	Gac/Aac																																																																														
SRC	6714	MSKCC	GRCh37	20	36031762	36031762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913314		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	41	613	0	ENST00000358208.4:c.1591C>T	p.Gln531Ter	p.Q531*	ENST00000358208		531	Cag/Tag																																																																														
SRC	6714	MSKCC	GRCh37	20	36031768	36031768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754707860		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	18	574	1	ENST00000358208.4:c.1597G>A	p.Gly533Arg	p.G533R	ENST00000358208		533	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306584	41306584	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	29	717	0	ENST00000373198.4:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000373198	NM_133170.3	359	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385164	41385164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	17	779	1	ENST00000373198.4:c.797G>A	p.Arg266His	p.R266H	ENST00000373198	NM_133170.3	266	cGc/cAc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164486	36164486	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	60	549	0	ENST00000300305.3:c.1389del	p.Thr464ProfsTer130	p.T464Pfs*130	ENST00000300305		463	ccC/cc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656878	45656878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1306205252		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	63	705	1	ENST00000407780.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000407780	NM_001283052.1	93	cGg/cAg																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127209	22127209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	26	592	1	ENST00000215832.6:c.919G>A	p.Ala307Thr	p.A307T	ENST00000215832	NM_002745.4	307	Gct/Act																																																																														
EP300	2033	MSKCC	GRCh37	22	41545790	41545790	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749702423		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	48	611	1	ENST00000263253.7:c.2405C>T	p.Pro802Leu	p.P802L	ENST00000263253	NM_001429.3	802	cCg/cTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41566520	41566520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	21	448	0	ENST00000263253.7:c.4397G>T	p.Trp1466Leu	p.W1466L	ENST00000263253	NM_001429.3	1466	tGg/tTg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104893815		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	41	462	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165213	47165213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	11	298	0	ENST00000409792.3:c.913del	p.Thr305GlnfsTer35	p.T305Qfs*35	ENST00000409792	NM_014159.6	305	Aca/ca																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437608	52437608	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs535796204		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	84	823	1	ENST00000460680.1:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000460680	NM_004656.3	518	cGg/cAg																																																																														
MITF	4286	MSKCC	GRCh37	3	69986988	69986988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs994568417		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	64	550	0	ENST00000352241.4:c.370G>A	p.Glu124Lys	p.E124K	ENST00000352241	NM_198159.2	124	Gaa/Aaa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	64	695	2	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	40	590	3	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542109	187542110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	19	419	0	ENST00000441802.2:c.5630dup	p.Val1878CysfsTer8	p.V1878Cfs*8	ENST00000441802	NM_005245.3	1877	cct/ccCt																																																																														
SDHA	6389	MSKCC	GRCh37	5	225600	225600	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777600956		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	21	250	0	ENST00000264932.6:c.379G>A	p.Val127Met	p.V127M	ENST00000264932	NM_004168.2	127	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1278821	1278821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150819225		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	72	800	0	ENST00000310581.5:c.2221G>A	p.Val741Met	p.V741M	ENST00000310581	NM_198253.2	741	Gtg/Atg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149439390	149439390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	46	738	0	ENST00000286301.3:c.2005G>T	p.Gly669Cys	p.G669C	ENST00000286301	NM_005211.3	669	Ggc/Tgc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	55	668	0	ENST00000412585.2:c.19del	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798218	32798218	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	46	570	0	ENST00000374899.4:c.1462-1G>T		p.X488_splice	ENST00000374899	NM_018833.2	488																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805787	32805788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1174402903		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	59	821	0	ENST00000374899.4:c.223dup	p.Leu75ProfsTer92	p.L75Pfs*92	ENST00000374899	NM_018833.2	75	ctg/cCtg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818213	32818213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs143800384		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	106	715	1	ENST00000354258.4:c.1312C>T	p.Arg438Ter	p.R438*	ENST00000354258	NM_000593.5	438	Cga/Tga																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553255	106553255	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	72	630	0	ENST00000369096.4:c.1220A>G	p.Asn407Ser	p.N407S	ENST00000369096	NM_001198.3	407	aAc/aGc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001350	150001350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	55	636	0	ENST00000253339.5:c.2254G>A	p.Ala752Thr	p.A752T	ENST00000253339		752	Gct/Act																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979543	2979543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148083162		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	33	529	0	ENST00000396946.4:c.704G>A	p.Arg235Gln	p.R235Q	ENST00000396946	NM_032415.4	235	cGg/cAg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729291	41729291	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	14	514	1	ENST00000242208.4:c.1238del	p.Lys413ArgfsTer6	p.K413Rfs*6	ENST00000242208	NM_002192.2	413	aAg/ag																																																																														
MET	4233	MSKCC	GRCh37	7	116398625	116398625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45587940		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	42	492	1	ENST00000397752.3:c.2215C>T	p.Arg739Cys	p.R739C	ENST00000397752	NM_000245.2	739	Cgt/Tgt																																																																														
MET	4233	MSKCC	GRCh37	7	116411880	116411883	+	intron_variant	Intron	DEL	TCTT	TCTT	-	rs747887276		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	59	859	0	ENST00000397752.3:c.2888-16_2888-13del		p.*963*	ENST00000397752	NM_000245.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151864311	151864311	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760393462		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	26	581	1	ENST00000262189.6:c.9670C>T	p.Arg3224Cys	p.R3224C	ENST00000262189	NM_170606.2	3224	Cgt/Tgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878863	151878863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	49	616	0	ENST00000262189.6:c.6082C>T	p.Arg2028Ter	p.R2028*	ENST00000262189	NM_170606.2	2028	Cga/Tga																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981752	70981752	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	30	926	2	ENST00000276594.2:c.344T>C	p.Leu115Pro	p.L115P	ENST00000276594	NM_024504.3	115	cTg/cCg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117866587	117866587	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	37	518	0	ENST00000297338.2:c.1058T>G	p.Leu353Arg	p.L353R	ENST00000297338	NM_006265.2	353	cTg/cGg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878932	117878932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	33	418	0	ENST00000297338.2:c.37C>T	p.Pro13Ser	p.P13S	ENST00000297338	NM_006265.2	13	Cct/Tct																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231211	98231211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	34	722	0	ENST00000331920.6:c.2072C>A	p.Thr691Asn	p.T691N	ENST00000331920	NM_000264.3	691	aCc/aAc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760702	133760702	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	96	932	0	ENST00000318560.5:c.3025C>T	p.Arg1009Ter	p.R1009*	ENST00000318560	NM_005157.4	1009	Cga/Tga																																																																														
ABL1	25	MSKCC	GRCh37	9	133760768	133760768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757631617		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	17	756	0	ENST00000318560.5:c.3091G>A	p.Val1031Met	p.V1031M	ENST00000318560	NM_005157.4	1031	Gtg/Atg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390936	139390936	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs746218012		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	19	918	1	ENST00000277541.6:c.7255C>A	p.Leu2419Ile	p.L2419I	ENST00000277541	NM_017617.3	2419	Ctt/Att																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039405	47039405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	48	700	1	ENST00000329236.7:c.797G>A	p.Arg266His	p.R266H	ENST00000329236	NM_001204466.1	266	cGc/cAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs137852217		P-0039888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	60	940	1	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0039932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	404	676	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41219623	41219623	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0039932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	370	296	1	ENST00000357654.3:c.5074+2T>A		p.X1692_splice	ENST00000357654	NM_007294.3	1692																																																																															
INSR	3643	MSKCC	GRCh37	19	7125535	7125535	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	187	406	0	ENST00000302850.5:c.3017T>G	p.Phe1006Cys	p.F1006C	ENST00000302850	NM_000208.2	1006	tTt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112179394	112179394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	110	439	0	ENST00000257430.4:c.8103G>T	p.Gln2701His	p.Q2701H	ENST00000257430	NM_000038.5	2701	caG/caT																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784941	9784941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778194087		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	50	725	0	ENST00000377346.4:c.2944C>T	p.Arg982Trp	p.R982W	ENST00000377346	NM_005026.3	982	Cgg/Tgg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298035	11298035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	115	640	1	ENST00000361445.4:c.2073G>T	p.Glu691Asp	p.E691D	ENST00000361445	NM_004958.3	691	gaG/gaT																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317108	11317108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	212	666	0	ENST00000361445.4:c.386C>T	p.Ala129Val	p.A129V	ENST00000361445	NM_004958.3	129	gCc/gTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255085	16255085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	52	388	1	ENST00000375759.3:c.2350C>T	p.Arg784Cys	p.R784C	ENST00000375759	NM_015001.2	784	Cgc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258976	16258976	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	104	638	0	ENST00000375759.3:c.6241C>T	p.Arg2081Ter	p.R2081*	ENST00000375759	NM_015001.2	2081	Cga/Tga																																																																														
SDHB	6390	MSKCC	GRCh37	1	17354254	17354254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150437793		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	59	369	1	ENST00000375499.3:c.530G>A	p.Arg177His	p.R177H	ENST00000375499	NM_003000.2	177	cGt/cAt																																																																														
SDHB	6390	MSKCC	GRCh37	1	17371323	17371323	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	145	571	0	ENST00000375499.3:c.133T>G	p.Tyr45Asp	p.Y45D	ENST00000375499	NM_003000.2	45	Tat/Gat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27058078	27058078	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763739196		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	69	384	0	ENST00000324856.7:c.1786C>T	p.Arg596Cys	p.R596C	ENST00000324856	NM_006015.4	596	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087377	27087377	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1341298575		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	58	591	0	ENST00000324856.7:c.1951A>G	p.Met651Val	p.M651V	ENST00000324856	NM_006015.4	651	Atg/Gtg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101508	27101508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	49	843	0	ENST00000324856.7:c.4790A>G	p.Asn1597Ser	p.N1597S	ENST00000324856	NM_006015.4	1597	aAc/aGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	75	538	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106355	27106355	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773909963		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	51	578	1	ENST00000324856.7:c.5966G>A	p.Arg1989Gln	p.R1989Q	ENST00000324856	NM_006015.4	1989	cGa/cAa																																																																														
MPL	4352	MSKCC	GRCh37	1	43814541	43814541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561818288		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	73	440	0	ENST00000372470.3:c.1336G>A	p.Gly446Arg	p.G446R	ENST00000372470	NM_005373.2	446	Gga/Aga																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797948	45797948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	228	777	0	ENST00000372115.3:c.781C>T	p.Pro261Ser	p.P261S	ENST00000372115	NM_001048171.1	261	Cca/Tca																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798286	45798286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147754007		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	97	673	0	ENST00000372115.3:c.608G>A	p.Arg203His	p.R203H	ENST00000372115	NM_001048171.1	203	cGc/cAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307227	65307227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	43	457	0	ENST00000342505.4:c.2461G>A	p.Ala821Thr	p.A821T	ENST00000342505	NM_002227.2	821	Gct/Act																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166325	118166325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	62	398	0	ENST00000369448.3:c.835C>T	p.Pro279Ser	p.P279S	ENST00000369448	NM_017709.3	279	Ccg/Tcg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458236	120458236	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	127	727	0	ENST00000256646.2:c.7109T>A	p.Leu2370His	p.L2370H	ENST00000256646	NM_024408.3	2370	cTc/cAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120465267	120465267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	84	404	0	ENST00000256646.2:c.4994C>A	p.Ser1665Tyr	p.S1665Y	ENST00000256646	NM_024408.3	1665	tCt/tAt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120493361	120493361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	32	499	0	ENST00000256646.2:c.2465T>C	p.Val822Ala	p.V822A	ENST00000256646	NM_024408.3	822	gTg/gCg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120508112	120508112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	94	389	0	ENST00000256646.2:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000256646	NM_024408.3	549	Gat/Aat																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851324	156851324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759637817		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	54	786	0	ENST00000524377.1:c.2281C>T	p.Arg761Trp	p.R761W	ENST00000524377	NM_002529.3	761	Cgg/Tgg																																																																														
SDHC	6391	MSKCC	GRCh37	1	161293415	161293415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767802663		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	52	385	0	ENST00000367975.2:c.32G>A	p.Arg11His	p.R11H	ENST00000367975	NM_003001.3	11	cGt/cAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746132	162746132	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1374086542		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	68	262	0	ENST00000367921.3:c.2255G>A	p.Arg752His	p.R752H	ENST00000367921	NM_006182.2	752	cGc/cAc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163318812	163318812	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	50	282	0	ENST00000271452.3:c.1202T>G	p.Ile401Ser	p.I401S	ENST00000271452	NM_145697.2	401	aTt/aGt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193110979	193110979	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	25	132	0	ENST00000367435.3:c.513-1G>A		p.X171_splice	ENST00000367435	NM_024529.4	171																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253478	226253478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	69	289	0	ENST00000366813.1:c.250C>T	p.Arg84Cys	p.R84C	ENST00000366813		84	Cgc/Tgc																																																																														
PARP1	142	MSKCC	GRCh37	1	226579901	226579901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	57	642	0	ENST00000366794.5:c.401A>G	p.Lys134Arg	p.K134R	ENST00000366794	NM_001618.3	134	aAg/aGg																																																																														
FH	2271	MSKCC	GRCh37	1	241675358	241675358	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	23	359	0	ENST00000366560.3:c.464A>G	p.Glu155Gly	p.E155G	ENST00000366560	NM_000143.3	155	gAa/gGa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243800971	243800971	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	19	363	0	ENST00000263826.5:c.503A>T	p.Lys168Met	p.K168M	ENST00000263826	NM_005465.4	168	aAg/aTg																																																																														
RET	5979	MSKCC	GRCh37	10	43596108	43596108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	39	631	0	ENST00000355710.3:c.275C>T	p.Thr92Ile	p.T92I	ENST00000355710	NM_020975.4	92	aCc/aTc																																																																														
RET	5979	MSKCC	GRCh37	10	43604602	43604602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781646869		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	191	762	0	ENST00000355710.3:c.1187C>T	p.Ser396Leu	p.S396L	ENST00000355710	NM_020975.4	396	tCg/tTg																																																																														
RET	5979	MSKCC	GRCh37	10	43610101	43610101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753686782		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	62	763	0	ENST00000355710.3:c.2053G>A	p.Val685Ile	p.V685I	ENST00000355710	NM_020975.4	685	Gtc/Atc																																																																														
RET	5979	MSKCC	GRCh37	10	43620396	43620396	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763489828		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	160	572	1	ENST00000355710.3:c.3005G>A	p.Ser1002Asn	p.S1002N	ENST00000355710	NM_020975.4	1002	aGc/aAc																																																																														
RET	5979	MSKCC	GRCh37	10	43623572	43623572	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760625882		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	30	346	1	ENST00000355710.3:c.3200C>T	p.Pro1067Leu	p.P1067L	ENST00000355710	NM_020975.4	1067	cCg/cTg																																																																														
RET	5979	MSKCC	GRCh37	10	43623593	43623593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	106	418	0	ENST00000355710.3:c.3221C>A	p.Pro1074His	p.P1074H	ENST00000355710	NM_020975.4	1074	cCt/cAt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63829546	63829546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	63	333	0	ENST00000279873.7:c.1189C>T	p.His397Tyr	p.H397Y	ENST00000279873	NM_032199.2	397	Cat/Tat																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845589	63845589	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759435915		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	46	223	0	ENST00000279873.7:c.1328G>A	p.Arg443His	p.R443H	ENST00000279873	NM_032199.2	443	cGc/cAc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845628	63845628	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	30	248	0	ENST00000279873.7:c.1370del	p.Asn457MetfsTer22	p.N457Mfs*22	ENST00000279873	NM_032199.2	456	gAa/ga																																																																														
TET1	80312	MSKCC	GRCh37	10	70450805	70450805	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759636615		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	135	495	0	ENST00000373644.4:c.5645C>T	p.Thr1882Met	p.T1882M	ENST00000373644	NM_030625.2	1882	aCg/aTg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672025	88672025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782231		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	31	455	0	ENST00000372037.3:c.559C>T	p.Arg187Cys	p.R187C	ENST00000372037	NM_004329.2	187	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690802	89690802	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs1114167621		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	10	196	0	ENST00000371953.3:c.210-1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
SUFU	51684	MSKCC	GRCh37	10	104353781	104353781	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369465986		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	97	626	1	ENST00000369902.3:c.715C>T	p.Arg239Trp	p.R239W	ENST00000369902	NM_016169.3	239	Cgg/Tgg																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771549	112771549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	77	464	1	ENST00000369452.4:c.1722G>A	p.Met574Ile	p.M574I	ENST00000369452	NM_007373.3	574	atG/atA																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114799857	114799857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	78	603	0	ENST00000543371.1:c.524C>T	p.Ala175Val	p.A175V	ENST00000543371	NM_001198531.1	175	gCc/gTc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903687	114903687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	96	569	1	ENST00000543371.1:c.691C>T	p.Pro231Ser	p.P231S	ENST00000543371	NM_001198531.1	231	Cca/Tca																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925621	114925621	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763934346		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	160	724	2	ENST00000543371.1:c.1699G>A	p.Ala567Thr	p.A567T	ENST00000543371	NM_001198531.1	567	Gcc/Acc																																																																														
HRAS	3265	MSKCC	GRCh37	11	532733	532733	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778400		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	60	831	0	ENST00000311189.7:c.473C>T	p.Thr158Met	p.T158M	ENST00000311189		158	aCg/aTg																																																																														
HRAS	3265	MSKCC	GRCh37	11	533853	533853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730880461		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	120	905	0	ENST00000311189.7:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000311189		68	cGg/cAg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456566	32456566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1311557029		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	14	49	0	ENST00000332351.3:c.326C>T	p.Ala109Val	p.A109V	ENST00000332351	NM_024426.4	109	gCg/gTg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572060	64572060	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs104894261		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	69	735	0	ENST00000337652.1:c.1594C>T	p.Arg532Ter	p.R532*	ENST00000337652	NM_130803.2	532	Cga/Tga																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573812	64573812	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771645621		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	76	660	0	ENST00000337652.1:c.956G>A	p.Arg319Gln	p.R319Q	ENST00000337652	NM_130803.2	319	cGg/cAg																																																																														
CCND1	595	MSKCC	GRCh37	11	69462909	69462909	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs777225097		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	44	648	0	ENST00000227507.2:c.722C>T	p.Pro241Leu	p.P241L	ENST00000227507	NM_053056.2	241	cCg/cTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943693	71943693	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	117	619	0	ENST00000298229.2:c.1736T>C	p.Ile579Thr	p.I579T	ENST00000298229	NM_001567.3	579	aTc/aCc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047151	77047151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	135	554	0	ENST00000356341.3:c.1393C>T	p.Leu465Phe	p.L465F	ENST00000356341	NM_002576.4	465	Ctc/Ttc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77103511	77103511	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	112	328	0	ENST00000356341.3:c.55A>T	p.Asn19Tyr	p.N19Y	ENST00000356341	NM_002576.4	19	Aat/Tat																																																																														
SESN3	143686	MSKCC	GRCh37	11	94906441	94906441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	89	410	0	ENST00000536441.1:c.1457C>T	p.Ala486Val	p.A486V	ENST00000536441	NM_144665.3	486	gCc/gTc																																																																														
PGR	5241	MSKCC	GRCh37	11	100996737	100996737	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	21	404	0	ENST00000325455.5:c.1789+1G>A		p.X597_splice	ENST00000325455	NM_001202474.3	597																																																																															
ATM	472	MSKCC	GRCh37	11	108129749	108129749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs780619951		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	20	322	0	ENST00000278616.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000278616	NM_000051.3	805	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108186765	108186765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	84	367	1	ENST00000278616.4:c.6123G>A	p.Met2041Ile	p.M2041I	ENST00000278616	NM_000051.3	2041	atG/atA																																																																														
ATM	472	MSKCC	GRCh37	11	108205753	108205753	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	30	344	0	ENST00000278616.4:c.8068T>G	p.Phe2690Val	p.F2690V	ENST00000278616	NM_000051.3	2690	Ttt/Gtt																																																																														
ATM	472	MSKCC	GRCh37	11	108205808	108205808	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	30	390	0	ENST00000278616.4:c.8123A>G	p.Asp2708Gly	p.D2708G	ENST00000278616	NM_000051.3	2708	gAt/gGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343084	118343084	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	34	312	0	ENST00000534358.1:c.1214del	p.Asn405IlefsTer25	p.N405Ifs*25	ENST00000534358	NM_005933.3	404	Aaa/aa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372558	118372558	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533826575		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	84	432	0	ENST00000534358.1:c.6491C>T	p.Pro2164Leu	p.P2164L	ENST00000534358	NM_005933.3	2164	cCg/cTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373158	118373158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	108	384	0	ENST00000534358.1:c.6551C>T	p.Pro2184Leu	p.P2184L	ENST00000534358	NM_005933.3	2184	cCt/cTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373947	118373947	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	70	325	0	ENST00000534358.1:c.7340A>G	p.Lys2447Arg	p.K2447R	ENST00000534358	NM_005933.3	2447	aAa/aGa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376803	118376803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	28	424	0	ENST00000534358.1:c.10196C>A	p.Pro3399His	p.P3399H	ENST00000534358	NM_005933.3	3399	cCt/cAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656262	18656262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774333984		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	66	442	0	ENST00000266497.5:c.2941C>T	p.Arg981Cys	p.R981C	ENST00000266497		981	Cgc/Tgc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21630823	21630823	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761204305		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	44	579	0	ENST00000421138.2:c.781G>A	p.Val261Ile	p.V261I	ENST00000421138		261	Gtt/Att																																																																														
ARID2	196528	MSKCC	GRCh37	12	46233228	46233228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374540100		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	33	298	0	ENST00000334344.6:c.1447C>T	p.Pro483Ser	p.P483S	ENST00000334344	NM_152641.2	483	Cca/Tca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245750	46245750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	101	441	0	ENST00000334344.6:c.3844G>A	p.Asp1282Asn	p.D1282N	ENST00000334344	NM_152641.2	1282	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415891	49415891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	80	467	1	ENST00000301067.7:c.16456G>A	p.Val5486Met	p.V5486M	ENST00000301067	NM_003482.3	5486	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420934	49420934	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs569620684		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	77	625	0	ENST00000301067.7:c.14815G>A	p.Glu4939Lys	p.E4939K	ENST00000301067	NM_003482.3	4939	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444228	49444228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	102	1014	0	ENST00000301067.7:c.3143C>T	p.Pro1048Leu	p.P1048L	ENST00000301067	NM_003482.3	1048	cCa/cTa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478786	56478786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1324972550		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	145	560	1	ENST00000267101.3:c.242G>A	p.Arg81Gln	p.R81Q	ENST00000267101	NM_001982.3	81	cGa/cAa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495609	56495609	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs745487835		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	37	495	1	ENST00000267101.3:c.3799C>T	p.Arg1267Ter	p.R1267*	ENST00000267101	NM_001982.3	1267	Cga/Tga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864756	57864756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	51	766	0	ENST00000228682.2:c.2233G>T	p.Ala745Ser	p.A745S	ENST00000228682	NM_005269.2	745	Gcg/Tcg																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145099	58145099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3211612		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	44	584	0	ENST00000257904.6:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000257904	NM_000075.3	82	cGa/cAa																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856166	111856166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1446024614		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	50	498	1	ENST00000341259.2:c.217C>T	p.Arg73Cys	p.R73C	ENST00000341259	NM_005475.2	73	Cgc/Tgc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112269	115112269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1446220330		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	47	177	0	ENST00000257566.3:c.1471G>A	p.Ala491Thr	p.A491T	ENST00000257566	NM_016569.3	491	Gcg/Acg																																																																														
SETD8	0	MSKCC	GRCh37	12	123892044	123892044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	64	520	0	ENST00000330479.4:c.853G>A	p.Asp285Asn	p.D285N	ENST00000330479	NM_020382.3	285	Gat/Aat																																																																														
POLE	5426	MSKCC	GRCh37	12	133214661	133214661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	62	530	0	ENST00000320574.5:c.5617C>A	p.Leu1873Ile	p.L1873I	ENST00000320574	NM_006231.2	1873	Ctc/Atc																																																																														
POLE	5426	MSKCC	GRCh37	12	133238162	133238162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	44	590	0	ENST00000320574.5:c.2815G>C	p.Ala939Pro	p.A939P	ENST00000320574	NM_006231.2	939	Gcc/Ccc																																																																														
POLE	5426	MSKCC	GRCh37	12	133242017	133242017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778288256		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	120	711	1	ENST00000320574.5:c.2339C>T	p.Ser780Leu	p.S780L	ENST00000320574	NM_006231.2	780	tCg/tTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133244968	133244968	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs567031389		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	212	834	2	ENST00000320574.5:c.2147C>T	p.Ala716Val	p.A716V	ENST00000320574	NM_006231.2	716	gCg/gTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519945		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	134	524	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563252	21563252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	83	950	0	ENST00000382592.4:c.667G>A	p.Gly223Arg	p.G223R	ENST00000382592	NM_014572.2	223	Ggg/Agg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622518	28622518	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs778256828		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	28	403	0	ENST00000241453.7:c.1099T>G	p.Phe367Val	p.F367V	ENST00000241453	NM_004119.2	367	Ttt/Gtt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28883045	28883045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	37	439	0	ENST00000282397.4:c.3655T>C	p.Phe1219Leu	p.F1219L	ENST00000282397	NM_002019.4	1219	Ttc/Ctc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895701	28895701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	50	537	0	ENST00000282397.4:c.3073G>T	p.Ala1025Ser	p.A1025S	ENST00000282397	NM_002019.4	1025	Gcg/Tcg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893395	32893395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	51	364	0	ENST00000380152.3:c.249G>T	p.Glu83Asp	p.E83D	ENST00000380152		83	gaG/gaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912025	32912025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	93	587	0	ENST00000380152.3:c.3533G>T	p.Ser1178Ile	p.S1178I	ENST00000380152		1178	aGc/aTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913954	32913954	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	73	416	0	ENST00000380152.3:c.5462A>G	p.Lys1821Arg	p.K1821R	ENST00000380152		1821	aAa/aGa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930610	32930610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358973		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	109	370	0	ENST00000380152.3:c.7481G>A	p.Arg2494Gln	p.R2494Q	ENST00000380152		2494	cGa/cAa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504591	103504591	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778293		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	51	272	0	ENST00000355739.4:c.212G>A	p.Arg71His	p.R71H	ENST00000355739	NM_000123.3	71	cGt/cAt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515241	103515241	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	32	282	0	ENST00000355739.4:c.1742T>C	p.Val581Ala	p.V581A	ENST00000355739	NM_000123.3	581	gTc/gCc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524624	103524624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs377353991		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	110	326	0	ENST00000355739.4:c.2755C>T	p.Arg919Trp	p.R919W	ENST00000355739	NM_000123.3	919	Cgg/Tgg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435273	110435273	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775912180		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	63	273	0	ENST00000375856.3:c.3128G>A	p.Arg1043His	p.R1043H	ENST00000375856	NM_003749.2	1043	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436662	110436662	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1172028943		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	142	1018	1	ENST00000375856.3:c.1739C>T	p.Thr580Met	p.T580M	ENST00000375856	NM_003749.2	580	aCg/aTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436740	110436740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779681200		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	138	927	0	ENST00000375856.3:c.1661G>A	p.Arg554His	p.R554H	ENST00000375856	NM_003749.2	554	cGc/cAc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093411	30093411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201154555		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	66	346	1	ENST00000331968.5:c.1852C>T	p.Arg618Ter	p.R618*	ENST00000331968	NM_002742.2	618	Cga/Tga																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30132955	30132955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145651161		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	106	632	0	ENST00000331968.5:c.646C>T	p.Arg216Cys	p.R216C	ENST00000331968	NM_002742.2	216	Cgc/Tgc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986925	36986925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1192440323		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	40	612	1	ENST00000354822.5:c.764C>T	p.Ala255Val	p.A255V	ENST00000354822	NM_001079668.2	255	gCg/gTg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986947	36986947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	179	706	1	ENST00000354822.5:c.742C>T	p.Arg248Cys	p.R248C	ENST00000354822	NM_001079668.2	248	Cgc/Tgc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060970	38060970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	74	423	0	ENST00000250448.2:c.1019C>T	p.Ala340Val	p.A340V	ENST00000250448	NM_004496.3	340	gCg/gTg																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68352675	68352675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1416106631		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	15	283	0	ENST00000487270.1:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000487270	NM_133509.3	181	cGg/cAg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609352	81609352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	45	320	1	ENST00000298171.2:c.950C>A	p.Ala317Asp	p.A317D	ENST00000298171	NM_000369.2	317	gCc/gAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562578	95562578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	55	335	0	ENST00000343455.3:c.4679C>T	p.Ala1560Val	p.A1560V	ENST00000343455	NM_177438.2	1560	gCg/gTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571448	95571448	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373412959		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	91	299	2	ENST00000343455.3:c.3229G>A	p.Asp1077Asn	p.D1077N	ENST00000343455	NM_177438.2	1077	Gat/Aat																																																																														
AKT1	207	MSKCC	GRCh37	14	105243030	105243030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	231	819	0	ENST00000349310.3:c.253G>A	p.Glu85Lys	p.E85K	ENST00000349310	NM_001014432.1	85	Gaa/Aaa																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022896	33022896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	22	374	0	ENST00000300177.4:c.5G>A	p.Ser2Asn	p.S2N	ENST00000300177	NM_001191322.1	2	aGc/aAc																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023207	33023207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	87	704	0	ENST00000300177.4:c.316G>A	p.Glu106Lys	p.E106K	ENST00000300177	NM_001191322.1	106	Gaa/Aaa																																																																														
RAD51	5888	MSKCC	GRCh37	15	41022106	41022106	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532630164		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	93	611	2	ENST00000267868.3:c.830C>T	p.Ala277Val	p.A277V	ENST00000267868	NM_002875.4	277	gCg/gTg																																																																														
MGA	23269	MSKCC	GRCh37	15	41961588	41961588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	40	510	0	ENST00000219905.7:c.496G>T	p.Gly166Cys	p.G166C	ENST00000219905	NM_001164273.1	166	Ggt/Tgt																																																																														
MGA	23269	MSKCC	GRCh37	15	42032354	42032354	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201349807		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	56	515	0	ENST00000219905.7:c.4538G>A	p.Arg1513His	p.R1513H	ENST00000219905	NM_001164273.1	1513	cGc/cAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42032375	42032375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	66	519	1	ENST00000219905.7:c.4559C>T	p.Ala1520Val	p.A1520V	ENST00000219905	NM_001164273.1	1520	gCg/gTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42035286	42035286	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759260692		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	70	534	0	ENST00000219905.7:c.5128G>A	p.Val1710Met	p.V1710M	ENST00000219905	NM_001164273.1	1710	Gtg/Atg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707863	43707863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	204	796	1	ENST00000382044.4:c.5018G>A	p.Arg1673Lys	p.R1673K	ENST00000382044	NM_001141980.1	1673	aGa/aAa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43720297	43720297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	48	533	2	ENST00000382044.4:c.3745C>T	p.Arg1249Trp	p.R1249W	ENST00000382044	NM_001141980.1	1249	Cgg/Tgg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748360	43748360	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	42	640	0	ENST00000382044.4:c.2446G>T	p.Glu816Ter	p.E816*	ENST00000382044	NM_001141980.1	816	Gaa/Taa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748794	43748794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	125	787	1	ENST00000382044.4:c.2012A>G	p.Glu671Gly	p.E671G	ENST00000382044	NM_001141980.1	671	gAa/gGa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477127	67477127	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750756638		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	48	651	0	ENST00000327367.4:c.934G>A	p.Ala312Thr	p.A312T	ENST00000327367	NM_005902.3	312	Gct/Act																																																																														
BLM	641	MSKCC	GRCh37	15	91326110	91326110	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	32	345	0	ENST00000355112.3:c.2618del	p.Lys873ArgfsTer7	p.K873Rfs*7	ENST00000355112	NM_000057.2	872	Aaa/aa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99451975	99451975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374465368		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	83	433	0	ENST00000268035.6:c.1309C>T	p.Arg437Cys	p.R437C	ENST00000268035	NM_000875.3	437	Cgc/Tgc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467176	99467176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	39	478	0	ENST00000268035.6:c.2557C>T	p.Pro853Ser	p.P853S	ENST00000268035	NM_000875.3	853	Ccg/Tcg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348100	348100	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266838158		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	74	825	1	ENST00000262320.3:c.1406G>A	p.Ser469Asn	p.S469N	ENST00000262320	NM_003502.3	469	aGc/aAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354425	354425	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs548567255		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	195	834	1	ENST00000262320.3:c.1133C>T	p.Pro378Leu	p.P378L	ENST00000262320	NM_003502.3	378	cCg/cTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121604	2121604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746677177		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	99	771	0	ENST00000219476.3:c.1933G>A	p.Val645Ile	p.V645I	ENST00000219476	NM_000548.3	645	Gtc/Atc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126080	2126080	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs754849580		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	80	777	0	ENST00000219476.3:c.2651A>G	p.Tyr884Cys	p.Y884C	ENST00000219476	NM_000548.3	884	tAc/tGc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129134	2129134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	228	838	0	ENST00000219476.3:c.3068C>T	p.Thr1023Met	p.T1023M	ENST00000219476	NM_000548.3	1023	aCg/aTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133701	2133701	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45517319		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	44	714	2	ENST00000219476.3:c.3889G>A	p.Ala1297Thr	p.A1297T	ENST00000219476	NM_000548.3	1297	Gcc/Acc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133770	2133770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767495365		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	141	798	3	ENST00000219476.3:c.3958G>A	p.Val1320Ile	p.V1320I	ENST00000219476	NM_000548.3	1320	Gtt/Att																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133798	2133798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45517323		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	175	680	0	ENST00000219476.3:c.3986G>A	p.Arg1329His	p.R1329H	ENST00000219476	NM_000548.3	1329	cGc/cAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639657	3639657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1394177026		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	287	1037	2	ENST00000294008.3:c.3982G>A	p.Val1328Ile	p.V1328I	ENST00000294008	NM_032444.2	1328	Gtc/Atc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640235	3640235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	228	988	1	ENST00000294008.3:c.3404G>A	p.Ser1135Asn	p.S1135N	ENST00000294008	NM_032444.2	1135	aGc/aAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640538	3640538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150453226		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	100	876	1	ENST00000294008.3:c.3101G>A	p.Arg1034His	p.R1034H	ENST00000294008	NM_032444.2	1034	cGc/cAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647550	3647550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	109	939	1	ENST00000294008.3:c.1513G>A	p.Ala505Thr	p.A505T	ENST00000294008	NM_032444.2	505	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781225	3781225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	78	957	1	ENST00000262367.5:c.5140G>A	p.Val1714Met	p.V1714M	ENST00000262367	NM_004380.2	1714	Gtg/Atg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807924	3807924	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	53	503	2	ENST00000262367.5:c.3495G>A	p.Trp1165Ter	p.W1165*	ENST00000262367	NM_004380.2	1165	tgG/tgA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3823775	3823775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	107	535	0	ENST00000262367.5:c.2440C>T	p.Pro814Ser	p.P814S	ENST00000262367	NM_004380.2	814	Cca/Tca																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862720	9862720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	135	512	0	ENST00000330684.3:c.2583C>A	p.Phe861Leu	p.F861L	ENST00000330684	NM_001134407.1	861	ttC/ttA																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029218	14029218	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41557814		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	50	288	0	ENST00000311895.7:c.1429C>T	p.Arg477Trp	p.R477W	ENST00000311895	NM_005236.2	477	Cgg/Tgg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14031663	14031663	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373565480		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	72	392	0	ENST00000311895.7:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000311895	NM_005236.2	618	Cgc/Tgc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041629	14041629	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777184889		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	47	438	1	ENST00000311895.7:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000311895	NM_005236.2	726	Cgc/Tgc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646204	23646204	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	105	412	0	ENST00000261584.4:c.1663A>C	p.Lys555Gln	p.K555Q	ENST00000261584	NM_024675.3	555	Aaa/Caa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646663	23646663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	44	433	0	ENST00000261584.4:c.1204C>A	p.Leu402Ile	p.L402I	ENST00000261584	NM_024675.3	402	Ctt/Att																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647098	23647098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780824		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	53	746	0	ENST00000261584.4:c.769G>A	p.Gly257Ser	p.G257S	ENST00000261584	NM_024675.3	257	Ggt/Agt																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134476	30134476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	82	572	0	ENST00000263025.4:c.55G>A	p.Gly19Arg	p.G19R	ENST00000263025	NM_002746.2	19	Ggg/Agg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50826570	50826570	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	27	190	0	ENST00000398568.2:c.2295A>C	p.Lys765Asn	p.K765N	ENST00000398568	NM_001042412.1	765	aaA/aaC																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782326	56782326	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751835590		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	77	626	0	ENST00000308159.5:c.167C>T	p.Ala56Val	p.A56V	ENST00000308159	NM_014669.4	56	gCa/gTa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56867237	56867237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138281575		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	30	408	0	ENST00000308159.5:c.1456C>T	p.Arg486Cys	p.R486C	ENST00000308159	NM_014669.4	486	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827655	72827655	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	158	588	0	ENST00000268489.5:c.8926T>C	p.Cys2976Arg	p.C2976R	ENST00000268489	NM_006885.3	2976	Tgt/Cgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829302	72829302	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs924588701		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	178	688	0	ENST00000268489.5:c.7279G>A	p.Asp2427Asn	p.D2427N	ENST00000268489	NM_006885.3	2427	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830895	72830895	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770650936		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	71	561	0	ENST00000268489.5:c.5686G>A	p.Ala1896Thr	p.A1896T	ENST00000268489	NM_006885.3	1896	Gcc/Acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831237	72831237	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1222142009		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	35	438	0	ENST00000268489.5:c.5344A>G	p.Met1782Val	p.M1782V	ENST00000268489	NM_006885.3	1782	Atg/Gtg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832274	72832274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1463858212		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	130	462	0	ENST00000268489.5:c.4307G>A	p.Arg1436His	p.R1436H	ENST00000268489	NM_006885.3	1436	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832340	72832340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	75	453	0	ENST00000268489.5:c.4241A>G	p.Glu1414Gly	p.E1414G	ENST00000268489	NM_006885.3	1414	gAa/gGa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845582	72845582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370933867		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	210	692	3	ENST00000268489.5:c.3758G>A	p.Arg1253His	p.R1253H	ENST00000268489	NM_006885.3	1253	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984580	72984580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	73	797	0	ENST00000268489.5:c.3004C>T	p.His1002Tyr	p.H1002Y	ENST00000268489	NM_006885.3	1002	Cac/Tac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991508	72991508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755878058		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	112	811	0	ENST00000268489.5:c.2537G>A	p.Arg846His	p.R846H	ENST00000268489	NM_006885.3	846	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993674	72993674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	47	676	0	ENST00000268489.5:c.371G>T	p.Ser124Ile	p.S124I	ENST00000268489	NM_006885.3	124	aGt/aTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819655	81819655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	103	659	0	ENST00000359376.3:c.61G>A	p.Ala21Thr	p.A21T	ENST00000359376	NM_002661.3	21	Gcc/Acc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819778	81819778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	40	497	0	ENST00000359376.3:c.184G>A	p.Glu62Lys	p.E62K	ENST00000359376	NM_002661.3	62	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81916896	81916896	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	63	642	0	ENST00000359376.3:c.715T>C	p.Ser239Pro	p.S239P	ENST00000359376	NM_002661.3	239	Tct/Cct																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81934252	81934252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	66	702	1	ENST00000359376.3:c.1229G>A	p.Ser410Asn	p.S410N	ENST00000359376	NM_002661.3	410	aGc/aAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81954827	81954827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	145	575	0	ENST00000359376.3:c.2260G>A	p.Asp754Asn	p.D754N	ENST00000359376	NM_002661.3	754	Gac/Aac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348714	89348714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	200	772	0	ENST00000301030.4:c.4236A>G	p.Ile1412Met	p.I1412M	ENST00000301030	NM_001256183.1	1412	atA/atG																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349013	89349013	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	79	847	1	ENST00000301030.4:c.3937C>T	p.Gln1313Ter	p.Q1313*	ENST00000301030	NM_001256183.1	1313	Cag/Tag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89825072	89825072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	44	621	0	ENST00000389301.3:c.2894C>T	p.Pro965Leu	p.P965L	ENST00000389301	NM_000135.2	965	cCt/cTt																																																																														
GPS2	2874	MSKCC	GRCh37	17	7218299	7218299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	41	584	2	ENST00000380728.2:c.73G>A	p.Glu25Lys	p.E25K	ENST00000380728		25	Gag/Aag																																																																														
GPS2	2874	MSKCC	GRCh37	17	7218344	7218344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1309160387		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	50	614	1	ENST00000380728.2:c.28C>T	p.Leu10Phe	p.L10F	ENST00000380728		10	Ctt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577590	7577590	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	66	565	0	ENST00000269305.4:c.691A>C	p.Thr231Pro	p.T231P	ENST00000269305	NM_001126112.2	231	Acc/Ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	41	689	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7989346	7989346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397514526		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	149	797	1	ENST00000319144.4:c.340C>T	p.Arg114Trp	p.R114W	ENST00000319144	NM_001139.2	114	Cgg/Tgg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990615	7990615	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs143526675		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	130	431	0	ENST00000319144.4:c.146C>T	p.Ala49Val	p.A49V	ENST00000319144	NM_001139.2	49	gCg/gTg																																																																														
AURKB	9212	MSKCC	GRCh37	17	8111146	8111146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	39	561	0	ENST00000585124.1:c.61C>A	p.Leu21Met	p.L21M	ENST00000585124	NM_004217.3	21	Ctg/Atg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961847	15961847	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763880485		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	69	541	0	ENST00000268712.3:c.5948C>T	p.Ala1983Val	p.A1983V	ENST00000268712	NM_006311.3	1983	gCg/gTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15976805	15976805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	21	434	0	ENST00000268712.3:c.3749T>C	p.Val1250Ala	p.V1250A	ENST00000268712	NM_006311.3	1250	gTg/gCg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012152	16012152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	42	479	0	ENST00000268712.3:c.2130G>T	p.Glu710Asp	p.E710D	ENST00000268712	NM_006311.3	710	gaG/gaT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	74	279	5	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131216	17131216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	213	855	0	ENST00000285071.4:c.236C>T	p.Ser79Leu	p.S79L	ENST00000285071	NM_144997.5	79	tCg/tTg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618854	37618854	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1236743086		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	116	608	0	ENST00000447079.4:c.530C>A	p.Ser177Tyr	p.S177Y	ENST00000447079	NM_015083.1	177	tCc/tAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682300	37682300	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762780789		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	96	631	0	ENST00000447079.4:c.3491C>A	p.Thr1164Asn	p.T1164N	ENST00000447079	NM_015083.1	1164	aCt/aAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864583	37864583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	81	511	0	ENST00000269571.5:c.235G>A	p.Glu79Lys	p.E79K	ENST00000269571		79	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864706	37864706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	119	732	0	ENST00000269571.5:c.358G>A	p.Gly120Arg	p.G120R	ENST00000269571		120	Gga/Aga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37882874	37882874	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758973569		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	73	735	0	ENST00000269571.5:c.2932C>T	p.Arg978Cys	p.R978C	ENST00000269571		978	Cgc/Tgc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883719	37883719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143958183		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	229	937	3	ENST00000269571.5:c.3331C>T	p.Arg1111Trp	p.R1111W	ENST00000269571		1111	Cgg/Tgg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40359681	40359681	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148568485		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	147	669	0	ENST00000293328.3:c.1972G>A	p.Asp658Asn	p.D658N	ENST00000293328	NM_012448.3	658	Gac/Aac																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375486	40375486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138255473		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	194	691	0	ENST00000293328.3:c.464C>T	p.Thr155Met	p.T155M	ENST00000293328	NM_012448.3	155	aCg/aTg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40458299	40458299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757085900		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	49	644	0	ENST00000345506.4:c.1514C>T	p.Pro505Leu	p.P505L	ENST00000345506	NM_003152.3	505	cCg/cTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41199717	41199717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	43	644	0	ENST00000357654.3:c.5410G>A	p.Val1804Ile	p.V1804I	ENST00000357654	NM_007294.3	1804	Gtc/Atc																																																																														
MSI2	124540	MSKCC	GRCh37	17	55334109	55334109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	24	360	1	ENST00000284073.2:c.6G>T	p.Glu2Asp	p.E2D	ENST00000284073	NM_138962.2	2	gaG/gaT																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435755	56435755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	34	572	1	ENST00000407977.2:c.1382G>T	p.Gly461Val	p.G461V	ENST00000407977		461	gGg/gTg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58734156	58734156	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	60	528	0	ENST00000305921.3:c.1214A>C	p.Glu405Ala	p.E405A	ENST00000305921	NM_003620.3	405	gAa/gCa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	56	519	0	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740742	58740742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	128	583	0	ENST00000305921.3:c.1647G>T	p.Lys549Asn	p.K549N	ENST00000305921	NM_003620.3	549	aaG/aaT																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59793369	59793369	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659410		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	27	472	0	ENST00000259008.2:c.2435C>T	p.Pro812Leu	p.P812L	ENST00000259008	NM_032043.2	812	cCt/cTt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59861644	59861645	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	39	270	0	ENST00000259008.2:c.1614dup	p.Arg539Ter	p.R539*	ENST00000259008	NM_032043.2	538	-/T																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66511578	66511578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	28	382	1	ENST00000358598.2:c.38G>A	p.Arg13His	p.R13H	ENST00000358598	NM_212471.2	13	cGc/cAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118987	70118987	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771056492		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	54	852	1	ENST00000245479.2:c.559G>A	p.Ala187Thr	p.A187T	ENST00000245479	NM_000346.3	187	Gcg/Acg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119809	70119809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771635102		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	47	780	2	ENST00000245479.2:c.811C>T	p.Arg271Cys	p.R271C	ENST00000245479	NM_000346.3	271	Cgc/Tgc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796999	78796999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	39	522	0	ENST00000306801.3:c.1112C>T	p.Pro371Leu	p.P371L	ENST00000306801	NM_020761.2	371	cCg/cTg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78857650	78857650	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184854653		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	132	784	0	ENST00000306801.3:c.1720C>T	p.Arg574Cys	p.R574C	ENST00000306801	NM_020761.2	574	Cgc/Tgc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896573	78896573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	235	932	2	ENST00000306801.3:c.2570C>T	p.Thr857Met	p.T857M	ENST00000306801	NM_020761.2	857	aCg/aTg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45422913	45422913	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	21	265	0	ENST00000262160.6:c.215C>A	p.Thr72Asn	p.T72N	ENST00000262160	NM_005901.5	72	aCt/aAt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56363666	56363666	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763701192		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	110	421	0	ENST00000348428.3:c.445C>T	p.Arg149Trp	p.R149W	ENST00000348428	NM_006785.3	149	Cgg/Tgg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612274	1612274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377185315		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	205	786	2	ENST00000344749.5:c.1745C>T	p.Ala582Val	p.A582V	ENST00000344749	NM_001136139.2	582	gCg/gTg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612308	1612308	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753925052		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	175	863	1	ENST00000344749.5:c.1711C>T	p.Arg571Cys	p.R571C	ENST00000344749	NM_001136139.2	571	Cgc/Tgc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615691	1615691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141432924		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	152	896	1	ENST00000344749.5:c.1580G>A	p.Arg527Gln	p.R527Q	ENST00000344749	NM_001136139.2	527	cGg/cAg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217846	2217846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	132	824	1	ENST00000398665.3:c.2620G>A	p.Val874Met	p.V874M	ENST00000398665	NM_032482.2	874	Gtg/Atg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226346	2226346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759369415		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	57	977	3	ENST00000398665.3:c.3826C>T	p.Arg1276Trp	p.R1276W	ENST00000398665	NM_032482.2	1276	Cgg/Tgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226589	2226589	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760808115		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	76	884	0	ENST00000398665.3:c.4069C>T	p.Arg1357Cys	p.R1357C	ENST00000398665	NM_032482.2	1357	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222705	5222705	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	55	594	0	ENST00000357368.4:c.3098A>G	p.Asp1033Gly	p.D1033G	ENST00000357368	NM_002850.3	1033	gAc/gGc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5273593	5273593	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs146675930		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	31	415	0	ENST00000357368.4:c.239C>T	p.Thr80Met	p.T80M	ENST00000357368	NM_002850.3	80	aCg/aTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7125431	7125431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	207	893	1	ENST00000302850.5:c.3121A>G	p.Asn1041Asp	p.N1041D	ENST00000302850	NM_000208.2	1041	Aat/Gat																																																																														
INSR	3643	MSKCC	GRCh37	19	7125515	7125515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	90	589	0	ENST00000302850.5:c.3037C>T	p.Pro1013Ser	p.P1013S	ENST00000302850	NM_000208.2	1013	Ccg/Tcg																																																																														
INSR	3643	MSKCC	GRCh37	19	7184349	7184349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	73	665	0	ENST00000302850.5:c.952G>T	p.Gly318Trp	p.G318W	ENST00000302850	NM_000208.2	318	Ggg/Tgg																																																																														
INSR	3643	MSKCC	GRCh37	19	7184534	7184534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775222338		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	196	590	0	ENST00000302850.5:c.767G>A	p.Arg256His	p.R256H	ENST00000302850	NM_000208.2	256	cGc/cAc																																																																														
INSR	3643	MSKCC	GRCh37	19	7267556	7267556	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	66	684	0	ENST00000302850.5:c.452A>C	p.Glu151Ala	p.E151A	ENST00000302850	NM_000208.2	151	gAg/gCg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10249230	10249230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779967013		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	45	687	1	ENST00000340748.4:c.3952G>A	p.Ala1318Thr	p.A1318T	ENST00000340748		1318	Gcg/Acg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10266541	10266541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	76	504	2	ENST00000340748.4:c.1432G>A	p.Gly478Ser	p.G478S	ENST00000340748		478	Ggc/Agc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610105	10610105	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775608603		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	112	737	1	ENST00000171111.5:c.605G>A	p.Arg202His	p.R202H	ENST00000171111	NM_203500.1	202	cGt/cAt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610562	10610562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752044333		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	189	827	1	ENST00000171111.5:c.148C>T	p.Arg50Cys	p.R50C	ENST00000171111	NM_203500.1	50	Cgc/Tgc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11031170	11031170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	77	897	2	ENST00000327064.4:c.1255C>T	p.Arg419Trp	p.R419W	ENST00000327064	NM_199141.1	419	Cgg/Tgg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11031619	11031619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	82	895	0	ENST00000327064.4:c.1534G>T	p.Ala512Ser	p.A512S	ENST00000327064	NM_199141.1	512	Gca/Tca																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097135	11097135	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778071122		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	144	810	0	ENST00000344626.4:c.626C>T	p.Pro209Leu	p.P209L	ENST00000344626	NM_003072.3	209	cCg/cTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11107209	11107209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	253	700	1	ENST00000344626.4:c.1801C>T	p.Pro601Ser	p.P601S	ENST00000344626	NM_003072.3	601	Ccg/Tcg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11114033	11114033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	42	490	0	ENST00000344626.4:c.1961G>A	p.Arg654Lys	p.R654K	ENST00000344626	NM_003072.3	654	aGg/aAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136141	11136141	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	68	761	0	ENST00000344626.4:c.3125T>A	p.Leu1042Gln	p.L1042Q	ENST00000344626	NM_003072.3	1042	cTg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11137009	11137009	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765857427		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	68	759	1	ENST00000344626.4:c.3202G>A	p.Gly1068Ser	p.G1068S	ENST00000344626	NM_003072.3	1068	Ggc/Agc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272495	15272495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	214	751	0	ENST00000263388.2:c.5944G>A	p.Glu1982Lys	p.E1982K	ENST00000263388	NM_000435.2	1982	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281305	15281305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	54	787	0	ENST00000263388.2:c.4951G>A	p.Ala1651Thr	p.A1651T	ENST00000263388	NM_000435.2	1651	Gct/Act																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284903	15284903	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778647361		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	159	948	3	ENST00000263388.2:c.4712G>A	p.Arg1571Gln	p.R1571Q	ENST00000263388	NM_000435.2	1571	cGg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290178	15290178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	113	725	0	ENST00000263388.2:c.3457C>A	p.Leu1153Met	p.L1153M	ENST00000263388	NM_000435.2	1153	Ctg/Atg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291828	15291828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	250	936	1	ENST00000263388.2:c.2938G>A	p.Ala980Thr	p.A980T	ENST00000263388	NM_000435.2	980	Gcc/Acc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292410	15292410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	115	845	0	ENST00000263388.2:c.2769G>T	p.Gln923His	p.Q923H	ENST00000263388	NM_000435.2	923	caG/caT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15297773	15297773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	241	915	4	ENST00000263388.2:c.1867G>A	p.Asp623Asn	p.D623N	ENST00000263388	NM_000435.2	623	Gac/Aac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300159	15300159	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1435305678		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	227	872	0	ENST00000263388.2:c.1117G>A	p.Gly373Ser	p.G373S	ENST00000263388	NM_000435.2	373	Ggc/Agc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303031	15303031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	182	999	1	ENST00000263388.2:c.419G>A	p.Gly140Glu	p.G140E	ENST00000263388	NM_000435.2	140	gGa/gAa																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379814	17379814	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	189	1000	0	ENST00000359435.4:c.199G>T	p.Gly67Ter	p.G67*	ENST00000359435	NM_001033549.1	67	Gga/Tga																																																																														
JAK3	3718	MSKCC	GRCh37	19	17951064	17951064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	48	722	1	ENST00000458235.1:c.1229G>A	p.Ser410Asn	p.S410N	ENST00000458235	NM_000215.3	410	aGc/aAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968331	18968331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	57	776	1	ENST00000262803.5:c.2171G>A	p.Gly724Asp	p.G724D	ENST00000262803	NM_002911.3	724	gGt/gAt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18974254	18974254	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149336516		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	66	586	0	ENST00000262803.5:c.2608G>A	p.Val870Ile	p.V870I	ENST00000262803	NM_002911.3	870	Gtc/Atc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30311657	30311657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	47	374	0	ENST00000262643.3:c.511G>T	p.Asp171Tyr	p.D171Y	ENST00000262643	NM_001238.2	171	Gat/Tat																																																																														
CCNE1	898	MSKCC	GRCh37	19	30314649	30314649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764865470		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	117	649	0	ENST00000262643.3:c.1198G>A	p.Gly400Ser	p.G400S	ENST00000262643	NM_001238.2	400	Ggt/Agt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210898	36210898	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747219825		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	54	850	0	ENST00000222270.7:c.649C>T	p.Arg217Trp	p.R217W	ENST00000222270	NM_014727.1	217	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213295	36213295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	59	798	0	ENST00000222270.7:c.2492G>A	p.Gly831Glu	p.G831E	ENST00000222270	NM_014727.1	831	gGg/gAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220138	36220138	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1201006738		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	83	764	1	ENST00000222270.7:c.4858G>A	p.Glu1620Lys	p.E1620K	ENST00000222270	NM_014727.1	1620	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221273	36221273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	223	846	0	ENST00000222270.7:c.5107C>A	p.Leu1703Ile	p.L1703I	ENST00000222270	NM_014727.1	1703	Ctc/Atc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223508	36223508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	118	878	1	ENST00000222270.7:c.6058C>T	p.Pro2020Ser	p.P2020S	ENST00000222270	NM_014727.1	2020	Ccg/Tcg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228065	36228065	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1285582819		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	52	861	0	ENST00000222270.7:c.7451G>A	p.Arg2484His	p.R2484H	ENST00000222270	NM_014727.1	2484	cGt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229256	36229256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	66	737	0	ENST00000222270.7:c.7946G>A	p.Arg2649His	p.R2649H	ENST00000222270	NM_014727.1	2649	cGc/cAc																																																																														
AXL	558	MSKCC	GRCh37	19	41745212	41745212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1417369748		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	90	616	1	ENST00000301178.4:c.1278G>A	p.Trp426Ter	p.W426*	ENST00000301178	NM_021913.4	426	tgG/tgA																																																																														
AXL	558	MSKCC	GRCh37	19	41763501	41763501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200271277		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	31	507	0	ENST00000301178.4:c.2300G>A	p.Arg767His	p.R767H	ENST00000301178	NM_021913.4	767	cGc/cAc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383170	42383170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374041941		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	134	799	2	ENST00000221972.3:c.190G>A	p.Val64Ile	p.V64I	ENST00000221972	NM_021601.3	64	Gtc/Atc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383298	42383298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	166	683	0	ENST00000221972.3:c.318C>A	p.Cys106Ter	p.C106*	ENST00000221972	NM_021601.3	106	tgC/tgA																																																																														
CIC	23152	MSKCC	GRCh37	19	42793181	42793181	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143474767		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	69	917	0	ENST00000575354.2:c.1073G>A	p.Ser358Asn	p.S358N	ENST00000575354	NM_015125.3	358	aGc/aAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42793472	42793472	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201067032		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	198	755	0	ENST00000575354.2:c.1274G>A	p.Arg425His	p.R425H	ENST00000575354	NM_015125.3	425	cGt/cAt																																																																														
CIC	23152	MSKCC	GRCh37	19	42798197	42798197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	208	784	0	ENST00000575354.2:c.4151G>A	p.Arg1384Gln	p.R1384Q	ENST00000575354	NM_015125.3	1384	cGg/cAg																																																																														
CIC	23152	MSKCC	GRCh37	19	42798803	42798803	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781618956		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	113	805	0	ENST00000575354.2:c.4375C>T	p.Pro1459Ser	p.P1459S	ENST00000575354	NM_015125.3	1459	Cca/Tca																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906786	50906786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778843530		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	226	879	3	ENST00000440232.2:c.1174G>A	p.Val392Met	p.V392M	ENST00000440232	NM_002691.3	392	Gtg/Atg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52705201	52705201	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1372727039		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	104	434	1	ENST00000322088.6:c.83G>A	p.Arg28His	p.R28H	ENST00000322088	NM_014225.5	28	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714517	52714517	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs950558629		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	165	502	1	ENST00000322088.6:c.275C>T	p.Pro92Leu	p.P92L	ENST00000322088	NM_014225.5	92	cCg/cTg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	180	672	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082625	16082625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	40	160	0	ENST00000281043.3:c.439G>A	p.Ala147Thr	p.A147T	ENST00000281043	NM_005378.4	147	Gcc/Acc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25462033	25462033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	41	544	1	ENST00000264709.3:c.2374C>T	p.Arg792Cys	p.R792C	ENST00000264709	NM_175629.2	792	Cgc/Tgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469037	25469037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1457323351		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	120	662	1	ENST00000264709.3:c.1421G>A	p.Arg474His	p.R474H	ENST00000264709	NM_175629.2	474	cGc/cAc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523073	25523073	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779208522		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	78	806	0	ENST00000264709.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000264709	NM_175629.2	38	Cgc/Tgc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965955	25965955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1330141951		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	61	682	0	ENST00000435504.4:c.3251C>T	p.Pro1084Leu	p.P1084L	ENST00000435504		1084	cCg/cTg																																																																														
ALK	238	MSKCC	GRCh37	2	29498010	29498010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	143	587	0	ENST00000389048.3:c.1996C>A	p.Pro666Thr	p.P666T	ENST00000389048	NM_004304.4	666	Ccc/Acc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213059	39213059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	229	945	0	ENST00000402219.2:c.3908C>T	p.Pro1303Leu	p.P1303L	ENST00000402219	NM_005633.3	1303	cCt/cTt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249864	39249864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	48	523	0	ENST00000402219.2:c.1705C>A	p.Leu569Met	p.L569M	ENST00000402219	NM_005633.3	569	Ctg/Atg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033719	48033719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	54	331	0	ENST00000234420.5:c.3930G>T	p.Glu1310Asp	p.E1310D	ENST00000234420	NM_000179.2	1310	gaG/gaT																																																																														
REL	5966	MSKCC	GRCh37	2	61149452	61149452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	21	336	0	ENST00000295025.8:c.1642G>A	p.Ala548Thr	p.A548T	ENST00000295025	NM_002908.2	548	Gcc/Acc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99181169	99181169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778648043		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	41	627	1	ENST00000074304.5:c.2110C>T	p.Arg704Cys	p.R704C	ENST00000074304	NM_001134224.1	704	Cgc/Tgc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128015243	128015243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	166	624	1	ENST00000285398.2:c.2278G>A	p.Glu760Lys	p.E760K	ENST00000285398	NM_000122.1	760	Gag/Aag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095985	178095985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181294188		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	30	391	0	ENST00000397062.3:c.1346G>A	p.Arg449His	p.R449H	ENST00000397062	NM_006164.4	449	cGc/cAc																																																																														
CASP8	841	MSKCC	GRCh37	2	202151297	202151297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	34	348	0	ENST00000358485.4:c.1597C>A	p.Leu533Ile	p.L533I	ENST00000358485	NM_001080125.1	533	Ctt/Att																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989569	212989569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	73	349	0	ENST00000342788.4:c.142G>A	p.Ala48Thr	p.A48T	ENST00000342788	NM_005235.2	48	Gcc/Acc																																																																														
INHA	3623	MSKCC	GRCh37	2	220440169	220440169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777288649		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	123	830	0	ENST00000243786.2:c.1022G>A	p.Arg341His	p.R341H	ENST00000243786	NM_002191.3	341	cGc/cAc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225360582	225360582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	10	184	0	ENST00000264414.4:c.1809G>A	p.Met603Ile	p.M603I	ENST00000264414	NM_003590.4	603	atG/atA																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661555	227661555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	172	736	0	ENST00000305123.5:c.1900C>T	p.Pro634Ser	p.P634S	ENST00000305123	NM_005544.2	634	Ccc/Tcc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661620	227661620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	50	688	0	ENST00000305123.5:c.1835A>G	p.Tyr612Cys	p.Y612C	ENST00000305123	NM_005544.2	612	tAc/tGc																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30253829	30253829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759194807		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	175	543	0	ENST00000307677.4:c.625C>T	p.Arg209Cys	p.R209C	ENST00000307677	NM_138578.1	209	Cgc/Tgc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019408	31019408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769717271		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	59	445	0	ENST00000375687.4:c.905G>A	p.Arg302His	p.R302H	ENST00000375687	NM_015338.5	302	cGt/cAt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374366	31374366	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757657111		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	56	646	1	ENST00000328111.2:c.365G>A	p.Arg122His	p.R122H	ENST00000328111	NM_006892.3	122	cGt/cAt																																																																														
SRC	6714	MSKCC	GRCh37	20	36031708	36031708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	69	872	1	ENST00000358208.4:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000358208		513	Gag/Aag																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750725	39750725	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	75	366	0	ENST00000361337.2:c.2125G>T	p.Glu709Ter	p.E709*	ENST00000361337	NM_003286.2	709	Gag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757396	40757396	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1374515118		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	71	574	1	ENST00000373198.4:c.2902G>A	p.Asp968Asn	p.D968N	ENST00000373198	NM_133170.3	968	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100981	41100981	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188436636		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	138	625	0	ENST00000373198.4:c.1375C>T	p.Arg459Trp	p.R459W	ENST00000373198	NM_133170.3	459	Cgg/Tgg																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961423	54961423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767515238		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	53	214	1	ENST00000312783.6:c.209C>T	p.Pro70Leu	p.P70L	ENST00000312783	NM_198436.1	70	cCg/cTg																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961466	54961466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375420005		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	54	338	0	ENST00000312783.6:c.166C>T	p.Arg56Cys	p.R56C	ENST00000312783	NM_198436.1	56	Cgc/Tgc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961498	54961498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	38	523	0	ENST00000312783.6:c.134A>G	p.Gln45Arg	p.Q45R	ENST00000312783	NM_198436.1	45	cAg/cGg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484231	57484231	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	42	419	0	ENST00000371085.3:c.545T>G	p.Ile182Ser	p.I182S	ENST00000371085	NM_000516.4	182	aTc/aGc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62292823	62292823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	28	361	0	ENST00000508582.2:c.275C>T	p.Ala92Val	p.A92V	ENST00000508582		92	gCt/gTt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171670	36171670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	72	442	1	ENST00000300305.3:c.895G>T	p.Ala299Ser	p.A299S	ENST00000300305		299	Gca/Tca																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259153	36259153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	190	621	0	ENST00000300305.3:c.338C>T	p.Pro113Leu	p.P113L	ENST00000300305		113	cCc/cTc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513258	44513258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	165	533	0	ENST00000291552.4:c.677G>A	p.Arg226His	p.R226H	ENST00000291552	NM_006758.2	226	cGt/cAt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24134046	24134046	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1268653633		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	33	445	0	ENST00000263121.7:c.197C>T	p.Ser66Leu	p.S66L	ENST00000263121	NM_003073.3	66	tCg/tTg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121073	29121073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	109	533	0	ENST00000328354.6:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000328354	NM_007194.3	162	Gat/Tat																																																																														
RAC2	5880	MSKCC	GRCh37	22	37628873	37628873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	160	867	0	ENST00000249071.6:c.193G>A	p.Asp65Asn	p.D65N	ENST00000249071	NM_002872.4	65	Gac/Aac																																																																														
EP300	2033	MSKCC	GRCh37	22	41572254	41572254	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057517732		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	80	638	0	ENST00000263253.7:c.4783T>G	p.Phe1595Val	p.F1595V	ENST00000263253	NM_001429.3	1595	Ttc/Gtc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37058999	37058999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs63751194		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	72	358	0	ENST00000231790.2:c.793C>T	p.Arg265Cys	p.R265C	ENST00000231790	NM_000249.3	265	Cgt/Tgt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070399	37070399	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs63751472		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	65	336	0	ENST00000231790.2:c.1534G>T	p.Glu512Ter	p.E512*	ENST00000231790	NM_000249.3	512	Gaa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098949	47098949	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	120	558	2	ENST00000409792.3:c.6325C>T	p.Arg2109Ter	p.R2109*	ENST00000409792	NM_014159.6	2109	Cga/Tga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165255	47165255	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	36	232	0	ENST00000409792.3:c.871G>T	p.Glu291Ter	p.E291*	ENST00000409792	NM_014159.6	291	Gaa/Taa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928639	49928639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1008363508		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	160	670	1	ENST00000296474.3:c.3635G>A	p.Arg1212Gln	p.R1212Q	ENST00000296474	NM_002447.2	1212	cGg/cAg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940025	49940025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201546006		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	99	790	2	ENST00000296474.3:c.1018G>A	p.Ala340Thr	p.A340T	ENST00000296474	NM_002447.2	340	Gcc/Acc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436438	52436438	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	55	547	0	ENST00000460680.1:c.2057-1G>T		p.X686_splice	ENST00000460680	NM_004656.3	686																																																																															
BAP1	8314	MSKCC	GRCh37	3	52437206	52437206	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35448940		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	178	797	0	ENST00000460680.1:c.1838C>T	p.Thr613Met	p.T613M	ENST00000460680	NM_004656.3	613	aCg/aTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437516	52437516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	108	738	0	ENST00000460680.1:c.1645G>A	p.Ala549Thr	p.A549T	ENST00000460680	NM_004656.3	549	Gct/Act																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52582210	52582210	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200020801		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	27	357	0	ENST00000394830.3:c.4618C>T	p.Arg1540Cys	p.R1540C	ENST00000394830	NM_018313.4	1540	Cgc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651507	52651507	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	99	440	0	ENST00000394830.3:c.1589T>C	p.Val530Ala	p.V530A	ENST00000394830	NM_018313.4	530	gTt/gCt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651532	52651532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	38	365	0	ENST00000394830.3:c.1564C>T	p.Arg522Ter	p.R522*	ENST00000394830	NM_018313.4	522	Cga/Tga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668619	52668619	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	52	298	0	ENST00000394830.3:c.1300C>T	p.Arg434Ter	p.R434*	ENST00000394830	NM_018313.4	434	Cga/Tga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668691	52668691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	34	398	0	ENST00000394830.3:c.1228C>A	p.His410Asn	p.H410N	ENST00000394830	NM_018313.4	410	Cat/Aat																																																																														
MITF	4286	MSKCC	GRCh37	3	69928347	69928347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	48	368	0	ENST00000352241.4:c.167G>A	p.Arg56His	p.R56H	ENST00000352241	NM_198159.2	56	cGc/cAc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71015179	71015179	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	65	272	0	ENST00000318789.4:c.1751T>C	p.Leu584Pro	p.L584P	ENST00000318789	NM_032682.5	584	cTa/cCa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090642	71090642	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1207635648		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	61	285	0	ENST00000318789.4:c.706A>G	p.Thr236Ala	p.T236A	ENST00000318789	NM_032682.5	236	Aca/Gca																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495764	72495765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	78	453	0	ENST00000477973.2:c.305dup	p.Arg103LysfsTer15	p.R103Kfs*15	ENST00000477973	NM_012234.5	103	aga/aAga																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72861878	72861878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201983708		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	97	533	2	ENST00000325599.8:c.1004G>A	p.Arg335His	p.R335H	ENST00000325599	NM_018130.2	335	cGc/cAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448604	89448604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	51	564	0	ENST00000336596.2:c.1568A>G	p.Lys523Arg	p.K523R	ENST00000336596	NM_005233.5	523	aAg/aGg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468382	89468382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs570346631		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	14	216	2	ENST00000336596.2:c.1916G>A	p.Arg639His	p.R639H	ENST00000336596	NM_005233.5	639	cGc/cAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480511	89480511	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	15	227	0	ENST00000336596.2:c.2346+2T>C		p.X782_splice	ENST00000336596	NM_005233.5	782																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528549	89528549	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	18	237	0	ENST00000336596.2:c.2849A>T	p.Asp950Val	p.D950V	ENST00000336596	NM_005233.5	950	gAc/gTc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119642287	119642287	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	46	491	0	ENST00000316626.5:c.410A>G	p.Glu137Gly	p.E137G	ENST00000316626		137	gAa/gGa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204927	128204927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	110	982	0	ENST00000341105.2:c.514G>A	p.Gly172Ser	p.G172S	ENST00000341105	NM_032638.4	172	Ggc/Agc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1415689583		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	52	396	0	ENST00000398015.3:c.251G>A	p.Arg84His	p.R84H	ENST00000398015	NM_004441.4	84	cGc/cAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960018	134960018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	36	557	0	ENST00000398015.3:c.2375C>T	p.Ala792Val	p.A792V	ENST00000398015	NM_004441.4	792	gCt/gTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960083	134960083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	58	724	0	ENST00000398015.3:c.2440A>G	p.Met814Val	p.M814V	ENST00000398015	NM_004441.4	814	Atg/Gtg																																																																														
ATR	545	MSKCC	GRCh37	3	142226929	142226929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	73	388	0	ENST00000350721.4:c.4875C>A	p.Asp1625Glu	p.D1625E	ENST00000350721	NM_001184.3	1625	gaC/gaA																																																																														
ATR	545	MSKCC	GRCh37	3	142269072	142269072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	31	465	0	ENST00000350721.4:c.2878C>T	p.Arg960Ter	p.R960*	ENST00000350721	NM_001184.3	960	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142281802	142281802	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	33	453	1	ENST00000350721.4:c.442G>T	p.Glu148Ter	p.E148*	ENST00000350721	NM_001184.3	148	Gaa/Taa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374775	149374775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	37	408	0	ENST00000360632.3:c.319G>A	p.Ala107Thr	p.A107T	ENST00000360632	NM_015472.4	107	Gcg/Acg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	76	542	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793349		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	29	195	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928047	178928047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	34	390	0	ENST00000263967.3:c.1325C>T	p.Ala442Val	p.A442V	ENST00000263967	NM_006218.2	442	gCt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937008	178937008	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs758050864		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	31	349	0	ENST00000263967.3:c.1689A>C	p.Glu563Asp	p.E563D	ENST00000263967	NM_006218.2	563	gaA/gaC																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430599	181430599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	36	568	0	ENST00000325404.1:c.451G>A	p.Ala151Thr	p.A151T	ENST00000325404	NM_003106.3	151	Gcg/Acg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431053	181431053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1226834656		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	103	661	2	ENST00000325404.1:c.905C>T	p.Pro302Leu	p.P302L	ENST00000325404	NM_003106.3	302	cCg/cTg																																																																														
BCL6	604	MSKCC	GRCh37	3	187446229	187446229	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	211	814	0	ENST00000232014.4:c.1459G>T	p.Glu487Ter	p.E487*	ENST00000232014	NM_001130845.1	487	Gag/Tag																																																																														
TP63	8626	MSKCC	GRCh37	3	189590708	189590708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	60	546	0	ENST00000264731.3:c.1273C>T	p.Gln425Ter	p.Q425*	ENST00000264731	NM_003722.4	425	Cag/Tag																																																																														
TP63	8626	MSKCC	GRCh37	3	189608639	189608639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	56	512	0	ENST00000264731.3:c.1714A>G	p.Thr572Ala	p.T572A	ENST00000264731	NM_003722.4	572	Acc/Gcc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801527	1801527	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	117	976	0	ENST00000260795.2:c.433G>T	p.Gly145Cys	p.G145C	ENST00000260795		145	Ggt/Tgt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803630	1803630	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780147591		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	134	836	0	ENST00000260795.2:c.808G>A	p.Asp270Asn	p.D270N	ENST00000260795		270	Gac/Aac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807369	1807369	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519049		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	90	709	0	ENST00000260795.2:c.1618A>G	p.Asn540Asp	p.N540D	ENST00000260795		540	Aac/Gac																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902690	1902690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	221	755	0	ENST00000382891.5:c.309G>T	p.Gln103His	p.Q103H	ENST00000382891	NM_133335.3	103	caG/caT																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957774	1957774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	112	679	0	ENST00000382891.5:c.2740G>A	p.Glu914Lys	p.E914K	ENST00000382891	NM_133335.3	914	Gag/Aag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1959711	1959711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	24	345	0	ENST00000382891.5:c.2933C>T	p.Ala978Val	p.A978V	ENST00000382891	NM_133335.3	978	gCc/gTc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750512	41750512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	145	588	0	ENST00000226382.2:c.116C>T	p.Ala39Val	p.A39V	ENST00000226382	NM_003924.3	39	gCc/gTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144556	55144556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	53	424	0	ENST00000257290.5:c.2030G>T	p.Cys677Phe	p.C677F	ENST00000257290	NM_006206.4	677	tGc/tTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144585	55144585	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	22	435	0	ENST00000257290.5:c.2059C>G	p.His687Asp	p.H687D	ENST00000257290	NM_006206.4	687	Cat/Gat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161366	55161366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775944809		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	75	484	0	ENST00000257290.5:c.3197C>T	p.Thr1066Ile	p.T1066I	ENST00000257290	NM_006206.4	1066	aCc/aTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55573269	55573269	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	14	195	0	ENST00000288135.5:c.931G>T	p.Gly311Ter	p.G311*	ENST00000288135	NM_000222.2	311	Gga/Tga																																																																														
TET2	54790	MSKCC	GRCh37	4	106157497	106157497	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748745799		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	38	274	0	ENST00000380013.4:c.2398C>T	p.His800Tyr	p.H800Y	ENST00000380013	NM_001127208.2	800	Cat/Tat																																																																														
TET2	54790	MSKCC	GRCh37	4	106157834	106157834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs4145756		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	67	247	0	ENST00000380013.4:c.2735C>T	p.Ala912Val	p.A912V	ENST00000380013	NM_001127208.2	912	gCg/gTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106180847	106180847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	26	324	0	ENST00000380013.4:c.3875G>T	p.Ser1292Ile	p.S1292I	ENST00000380013	NM_001127208.2	1292	aGc/aTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244107	153244107	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	64	507	0	ENST00000281708.4:c.2050T>C	p.Cys684Arg	p.C684R	ENST00000281708	NM_033632.3	684	Tgt/Cgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509969	187509969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	42	406	1	ENST00000441802.2:c.13544C>A	p.Pro4515His	p.P4515H	ENST00000441802	NM_005245.3	4515	cCc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525091	187525091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	135	440	0	ENST00000441802.2:c.10589A>G	p.Tyr3530Cys	p.Y3530C	ENST00000441802	NM_005245.3	3530	tAc/tGc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539182	187539182	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771064453		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	45	396	0	ENST00000441802.2:c.8558G>A	p.Ser2853Asn	p.S2853N	ENST00000441802	NM_005245.3	2853	aGt/aAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539924	187539924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765909046		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	33	410	0	ENST00000441802.2:c.7816G>A	p.Gly2606Arg	p.G2606R	ENST00000441802	NM_005245.3	2606	Ggg/Agg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542152	187542152	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141937206		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	26	391	0	ENST00000441802.2:c.5588C>T	p.Ala1863Val	p.A1863V	ENST00000441802	NM_005245.3	1863	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627885	187627885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752785176		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	191	652	0	ENST00000441802.2:c.3097G>A	p.Val1033Met	p.V1033M	ENST00000441802	NM_005245.3	1033	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1254521	1254521	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200288187		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	170	879	0	ENST00000310581.5:c.3257G>A	p.Arg1086His	p.R1086H	ENST00000310581	NM_198253.2	1086	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1293976	1293976	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773366454		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	234	1058	0	ENST00000310581.5:c.1025G>A	p.Arg342Gln	p.R342Q	ENST00000310581	NM_198253.2	342	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1294331	1294331	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750497661		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	79	669	0	ENST00000310581.5:c.670C>T	p.Arg224Cys	p.R224C	ENST00000310581	NM_198253.2	224	Cgc/Tgc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31409413	31409413	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	14	345	0	ENST00000344624.3:c.3694A>G	p.Lys1232Glu	p.K1232E	ENST00000344624		1232	Aag/Gag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31431770	31431770	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs775775322		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	47	325	1	ENST00000344624.3:c.3058C>T	p.Arg1020Ter	p.R1020*	ENST00000344624		1020	Cga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38952435	38952435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138880117		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	72	292	2	ENST00000357387.3:c.2990G>A	p.Arg997His	p.R997H	ENST00000357387	NM_152756.3	997	cGc/cAc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38962651	38962651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	25	157	0	ENST00000357387.3:c.1604G>A	p.Ser535Asn	p.S535N	ENST00000357387	NM_152756.3	535	aGc/aAc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168756	56168756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768818239		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	73	448	0	ENST00000399503.3:c.1610G>A	p.Ser537Asn	p.S537N	ENST00000399503	NM_005921.1	537	aGc/aAc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754643	57754643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	19	254	0	ENST00000274289.3:c.404G>A	p.Arg135Lys	p.R135K	ENST00000274289	NM_006622.3	135	aGa/aAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592163	67592163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	75	205	0	ENST00000274335.5:c.1979C>T	p.Ser660Phe	p.S660F	ENST00000274335		660	tCt/tTt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970928	79970928	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1362828312		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	88	516	0	ENST00000265081.6:c.1154A>G	p.Asn385Ser	p.N385S	ENST00000265081	NM_002439.4	385	aAc/aGc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80071538	80071538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	16	198	0	ENST00000265081.6:c.2279C>A	p.Ala760Asp	p.A760D	ENST00000265081	NM_002439.4	760	gCt/gAt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670711	86670711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	20	126	0	ENST00000274376.6:c.1989G>T	p.Lys663Asn	p.K663N	ENST00000274376	NM_002890.2	663	aaG/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112175670	112175670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	82	313	0	ENST00000257430.4:c.4379C>A	p.Ala1460Asp	p.A1460D	ENST00000257430	NM_000038.5	1460	gCt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175745	112175745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	26	252	0	ENST00000257430.4:c.4454C>A	p.Ala1485Asp	p.A1485D	ENST00000257430	NM_000038.5	1485	gCt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112177565	112177565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	18	255	0	ENST00000257430.4:c.6274C>A	p.Leu2092Ile	p.L2092I	ENST00000257430	NM_000038.5	2092	Cta/Ata																																																																														
APC	324	MSKCC	GRCh37	5	112178606	112178606	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1311878041		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	28	354	0	ENST00000257430.4:c.7315C>T	p.Arg2439Cys	p.R2439C	ENST00000257430	NM_000038.5	2439	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112178969	112178969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	26	304	0	ENST00000257430.4:c.7678C>T	p.Arg2560Ter	p.R2560*	ENST00000257430	NM_000038.5	2560	Cga/Tga																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911502	131911502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	43	297	0	ENST00000265335.6:c.247C>T	p.Arg83Cys	p.R83C	ENST00000265335		83	Cgt/Tgt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911551	131911551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1372122953		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	18	326	0	ENST00000265335.6:c.296C>A	p.Ser99Tyr	p.S99Y	ENST00000265335		99	tCt/tAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131939071	131939071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369996457		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	40	310	1	ENST00000265335.6:c.2287C>T	p.Arg763Cys	p.R763C	ENST00000265335		763	Cgc/Tgc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149498354	149498354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	171	741	1	ENST00000261799.4:c.2860C>A	p.Leu954Met	p.L954M	ENST00000261799	NM_002609.3	954	Ctg/Atg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149499049	149499049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	63	658	0	ENST00000261799.4:c.2779G>A	p.Ala927Thr	p.A927T	ENST00000261799	NM_002609.3	927	Gcc/Acc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500540	149500540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	133	687	0	ENST00000261799.4:c.2497C>T	p.Leu833Phe	p.L833F	ENST00000261799	NM_002609.3	833	Ctc/Ttc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149512344	149512344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368602685		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	103	691	4	ENST00000261799.4:c.1096G>A	p.Ala366Thr	p.A366T	ENST00000261799	NM_002609.3	366	Gcc/Acc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515379	149515379	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568728923		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	185	706	1	ENST00000261799.4:c.103G>A	p.Val35Ile	p.V35I	ENST00000261799	NM_002609.3	35	Gtc/Atc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518689	176518689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	42	611	0	ENST00000292408.4:c.607C>T	p.Arg203Cys	p.R203C	ENST00000292408	NM_213647.1	203	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562765	176562765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	71	569	0	ENST00000439151.2:c.661G>A	p.Ala221Thr	p.A221T	ENST00000439151	NM_022455.4	221	Gca/Aca																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638900	176638900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763399938		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	195	620	0	ENST00000439151.2:c.3500G>A	p.Arg1167His	p.R1167H	ENST00000439151	NM_022455.4	1167	cGc/cAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180039610	180039610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs202140363		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	44	664	0	ENST00000261937.6:c.3433C>T	p.Arg1145Cys	p.R1145C	ENST00000261937	NM_182925.4	1145	Cgc/Tgc																																																																														
IRF4	3662	MSKCC	GRCh37	6	394951	394951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	60	452	0	ENST00000380956.4:c.347T>C	p.Leu116Pro	p.L116P	ENST00000380956	NM_001195286.1	116	cTg/cCg																																																																														
IRF4	3662	MSKCC	GRCh37	6	395931	395931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	55	425	0	ENST00000380956.4:c.488C>T	p.Ala163Val	p.A163V	ENST00000380956	NM_001195286.1	163	gCc/gTc																																																																														
IRF4	3662	MSKCC	GRCh37	6	398927	398927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751010198		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	119	520	0	ENST00000380956.4:c.737C>T	p.Ala246Val	p.A246V	ENST00000380956	NM_001195286.1	246	gCg/gTg																																																																														
IRF4	3662	MSKCC	GRCh37	6	407575	407575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748516736		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	69	308	0	ENST00000380956.4:c.1333C>T	p.Arg445Cys	p.R445C	ENST00000380956	NM_001195286.1	445	Cgc/Tgc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20486918	20486918	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	45	220	0	ENST00000346618.3:c.885-2A>G		p.X295_splice	ENST00000346618	NM_001949.4	295																																																																															
TAP2	6891	MSKCC	GRCh37	6	32803444	32803444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779665536		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	92	812	0	ENST00000374899.4:c.715G>A	p.Gly239Ser	p.G239S	ENST00000374899	NM_018833.2	239	Ggt/Agt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32814973	32814973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	148	564	0	ENST00000354258.4:c.2092G>A	p.Glu698Lys	p.E698K	ENST00000354258	NM_000593.5	698	Gag/Aag																																																																														
TAP1	6890	MSKCC	GRCh37	6	32819921	32819921	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140245535		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	152	809	0	ENST00000354258.4:c.989G>A	p.Arg330His	p.R330H	ENST00000354258	NM_000593.5	330	cGc/cAc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32819964	32819964	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531615408		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	252	813	3	ENST00000354258.4:c.946G>A	p.Val316Met	p.V316M	ENST00000354258	NM_000593.5	316	Gtg/Atg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289271	33289271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1303387799		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	66	481	0	ENST00000374542.5:c.281G>A	p.Arg94His	p.R94H	ENST00000374542	NM_001141970.1	94	cGt/cAt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652302	36652302	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774390644		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	90	607	0	ENST00000244741.5:c.424C>T	p.Arg142Trp	p.R142W	ENST00000244741	NM_000389.4	142	Cgg/Tgg																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748519	43748519	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267601048		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	45	465	0	ENST00000523873.1:c.473C>T	p.Ser158Phe	p.S158F	ENST00000523873		158	tCc/tTc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43749734	43749734	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	48	494	0	ENST00000523873.1:c.587T>C	p.Val196Ala	p.V196A	ENST00000523873		196	gTa/gCa																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64290050	64290050	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs546134768		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	95	456	2	ENST00000370651.3:c.493G>A	p.Gly165Ser	p.G165S	ENST00000370651	NM_003463.4	165	Ggt/Agt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956676	93956676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465960814		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	44	364	0	ENST00000369303.4:c.2560C>T	p.Arg854Cys	p.R854C	ENST00000369303	NM_004440.3	854	Cgt/Tgt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554912	106554912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	85	484	0	ENST00000369096.4:c.2029C>T	p.His677Tyr	p.H677Y	ENST00000369096	NM_001198.3	677	Cac/Tac																																																																														
FYN	2534	MSKCC	GRCh37	6	112029147	112029147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	26	408	2	ENST00000368678.4:c.421G>A	p.Val141Ile	p.V141I	ENST00000368678		141	Gtt/Att																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631343	117631343	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	47	425	0	ENST00000368508.3:c.6335del	p.Asn2112MetfsTer22	p.N2112Mfs*22	ENST00000368508	NM_002944.2	2112	aAt/at																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662788	117662788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	27	227	0	ENST00000368508.3:c.4677G>T	p.Glu1559Asp	p.E1559D	ENST00000368508	NM_002944.2	1559	gaG/gaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678076	117678076	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs373090808		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	34	283	0	ENST00000368508.3:c.3857G>A	p.Arg1286His	p.R1286H	ENST00000368508	NM_002944.2	1286	cGc/cAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117680985	117680985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771443531		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	62	301	0	ENST00000368508.3:c.3635G>A	p.Arg1212His	p.R1212H	ENST00000368508	NM_002944.2	1212	cGc/cAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709080	117709080	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	74	494	0	ENST00000368508.3:c.1877del	p.Phe626SerfsTer2	p.F626Sfs*2	ENST00000368508	NM_002944.2	626	tTc/tc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200243	138200243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	35	467	0	ENST00000237289.4:c.1661G>A	p.Ser554Asn	p.S554N	ENST00000237289	NM_001270507.1	554	aGc/aAc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004256	150004256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	25	243	0	ENST00000253339.5:c.1969C>T	p.Arg657Cys	p.R657C	ENST00000253339		657	Cgt/Tgt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005260	150005260	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	25	420	0	ENST00000253339.5:c.965C>A	p.Ser322Tyr	p.S322Y	ENST00000253339		322	tCt/tAt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016233	150016233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	82	363	0	ENST00000253339.5:c.473C>A	p.Pro158His	p.P158H	ENST00000253339		158	cCt/cAt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016312	150016312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	49	392	0	ENST00000253339.5:c.394G>A	p.Glu132Lys	p.E132K	ENST00000253339		132	Gaa/Aaa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265353	152265353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188957694		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	111	470	0	ENST00000206249.3:c.806G>A	p.Arg269His	p.R269H	ENST00000206249	NM_000125.3	269	cGc/cAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469934	157469934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	38	612	0	ENST00000346085.5:c.2728C>T	p.Pro910Ser	p.P910S	ENST00000346085	NM_020732.3	910	Cct/Tct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521974	157521974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772972321		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	48	563	2	ENST00000346085.5:c.4246C>T	p.Arg1416Cys	p.R1416C	ENST00000346085	NM_020732.3	1416	Cgc/Tgc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528051	157528051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	82	533	1	ENST00000346085.5:c.5776C>T	p.Arg1926Ter	p.R1926*	ENST00000346085	NM_020732.3	1926	Cga/Tga																																																																														
PARK2	0	MSKCC	GRCh37	6	161807872	161807872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	37	397	0	ENST00000366898.1:c.1121A>G	p.Glu374Gly	p.E374G	ENST00000366898	NM_004562.2	374	gAa/gGa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962902	2962902	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186255478		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	113	909	0	ENST00000396946.4:c.2006C>T	p.Thr669Met	p.T669M	ENST00000396946	NM_032415.4	669	aCg/aTg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6042116	6042116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881916		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	55	177	0	ENST00000265849.7:c.505C>T	p.Arg169Cys	p.R169C	ENST00000265849	NM_000535.5	169	Cgc/Tgc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13940461	13940461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	30	290	0	ENST00000405192.2:c.1045G>A	p.Ala349Thr	p.A349T	ENST00000405192	NM_001163147.1	349	Gcc/Acc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975436	13975436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	35	405	0	ENST00000405192.2:c.451G>A	p.Ala151Thr	p.A151T	ENST00000405192	NM_001163147.1	151	Gca/Aca																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	44	352	4	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450243	50450243	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757521297		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	57	486	1	ENST00000331340.3:c.427C>T	p.Arg143Trp	p.R143W	ENST00000331340	NM_006060.4	143	Cgg/Tgg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467747	50467747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	126	657	0	ENST00000331340.3:c.982C>T	p.Arg328Cys	p.R328C	ENST00000331340	NM_006060.4	328	Cgc/Tgc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508621	106508621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	87	536	0	ENST00000359195.3:c.615G>T	p.Lys205Asn	p.K205N	ENST00000359195	NM_002649.2	205	aaG/aaT																																																																														
MET	4233	MSKCC	GRCh37	7	116435975	116435975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	140	593	0	ENST00000397752.3:c.3970G>T	p.Ala1324Ser	p.A1324S	ENST00000397752	NM_000245.2	1324	Gcc/Tcc																																																																														
SMO	6608	MSKCC	GRCh37	7	128845511	128845511	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111694017		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	180	749	0	ENST00000249373.3:c.808G>A	p.Val270Ile	p.V270I	ENST00000249373	NM_005631.4	270	Gtc/Atc																																																																														
SMO	6608	MSKCC	GRCh37	7	128846357	128846357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760560948		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	173	687	0	ENST00000249373.3:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000249373	NM_005631.4	398	cGa/cAa																																																																														
SMO	6608	MSKCC	GRCh37	7	128850838	128850838	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121918348		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	97	725	1	ENST00000249373.3:c.1685G>A	p.Arg562Gln	p.R562Q	ENST00000249373	NM_005631.4	562	cGg/cAg																																																																														
SMO	6608	MSKCC	GRCh37	7	128850880	128850880	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs577512487		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	49	769	1	ENST00000249373.3:c.1727G>A	p.Arg576Gln	p.R576Q	ENST00000249373	NM_005631.4	576	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140481380	140481380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	17	295	0	ENST00000288602.6:c.1428G>A	p.Trp476Ter	p.W476*	ENST00000288602	NM_004333.4	476	tgG/tgA																																																																														
RHEB	6009	MSKCC	GRCh37	7	151164212	151164212	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	13	150	0	ENST00000262187.5:c.548T>C	p.Val183Ala	p.V183A	ENST00000262187	NM_005614.3	183	gTg/gCg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151841862	151841862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	44	308	0	ENST00000262189.6:c.14279C>T	p.Ser4760Leu	p.S4760L	ENST00000262189	NM_170606.2	4760	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151843697	151843697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151112171		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	68	348	0	ENST00000262189.6:c.14018G>A	p.Arg4673His	p.R4673H	ENST00000262189	NM_170606.2	4673	cGc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859407	151859407	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs749244367		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	44	427	0	ENST00000262189.6:c.11255C>A	p.Pro3752His	p.P3752H	ENST00000262189	NM_170606.2	3752	cCt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864284	151864284	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	72	434	0	ENST00000262189.6:c.9697C>G	p.Gln3233Glu	p.Q3233E	ENST00000262189	NM_170606.2	3233	Caa/Gaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874526	151874526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761335251		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	46	337	0	ENST00000262189.6:c.8012C>T	p.Thr2671Met	p.T2671M	ENST00000262189	NM_170606.2	2671	aCg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880191	151880191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	73	328	0	ENST00000262189.6:c.5133G>A	p.Met1711Ile	p.M1711I	ENST00000262189	NM_170606.2	1711	atG/atA																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38139034	38139034	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201914561		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	81	415	0	ENST00000317025.8:c.3569G>A	p.Arg1190Gln	p.R1190Q	ENST00000317025	NM_023034.1	1190	cGa/cAa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38156989	38156989	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	85	493	0	ENST00000317025.8:c.2731T>C	p.Ser911Pro	p.S911P	ENST00000317025	NM_023034.1	911	Tca/Cca																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38272356	38272356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	70	565	0	ENST00000425967.3:c.2011G>A	p.Ala671Thr	p.A671T	ENST00000425967	NM_001174067.1	671	Gca/Aca																																																																														
LYN	4067	MSKCC	GRCh37	8	56912039	56912039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	132	653	0	ENST00000519728.1:c.1267A>G	p.Lys423Glu	p.K423E	ENST00000519728	NM_002350.3	423	Aag/Gag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995514	68995514	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	37	488	0	ENST00000288368.4:c.1918A>G	p.Asn640Asp	p.N640D	ENST00000288368	NM_024870.2	640	Aat/Gat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129945	69129945	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748812788		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	109	334	0	ENST00000288368.4:c.4699C>T	p.Arg1567Trp	p.R1567W	ENST00000288368	NM_024870.2	1567	Cgg/Tgg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970972	70970972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	72	715	0	ENST00000276594.2:c.1289G>A	p.Arg430Lys	p.R430K	ENST00000276594	NM_024504.3	430	aGg/aAg																																																																														
NBN	4683	MSKCC	GRCh37	8	90955513	90955513	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1217913746		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	35	411	1	ENST00000265433.3:c.2152G>T	p.Glu718Ter	p.E718*	ENST00000265433	NM_002485.4	718	Gaa/Taa																																																																														
NBN	4683	MSKCC	GRCh37	8	90976677	90976677	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs876659969		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	54	405	0	ENST00000265433.3:c.955A>G	p.Thr319Ala	p.T319A	ENST00000265433	NM_002485.4	319	Aca/Gca																																																																														
NBN	4683	MSKCC	GRCh37	8	90993113	90993113	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1355269482		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	11	202	0	ENST00000265433.3:c.329A>G	p.Tyr110Cys	p.Y110C	ENST00000265433	NM_002485.4	110	tAt/tGt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141557702	141557702	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1431074938		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	80	770	1	ENST00000220592.5:c.1613C>T	p.Thr538Met	p.T538M	ENST00000220592	NM_012154.3	538	aCg/aTg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739029	145739029	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs947223466		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	161	658	1	ENST00000428558.2:c.2126G>A	p.Arg709Gln	p.R709Q	ENST00000428558	NM_004260.3	709	cGg/cAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341196	8341196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	38	339	0	ENST00000356435.5:c.5020C>T	p.Arg1674Cys	p.R1674C	ENST00000356435		1674	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389371	8389371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	46	433	0	ENST00000356435.5:c.4247T>C	p.Ile1416Thr	p.I1416T	ENST00000356435		1416	aTa/aCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465651	8465651	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772237001		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	28	325	1	ENST00000356435.5:c.3529C>T	p.Arg1177Cys	p.R1177C	ENST00000356435		1177	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499772	8499772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773166856		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	149	517	2	ENST00000356435.5:c.2197C>T	p.Arg733Cys	p.R733C	ENST00000356435		733	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524967	8524967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	48	326	0	ENST00000356435.5:c.637G>A	p.Ala213Thr	p.A213T	ENST00000356435		213	Gcg/Acg																																																																														
TEK	7010	MSKCC	GRCh37	9	27202820	27202820	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	47	270	0	ENST00000380036.4:c.1912C>A	p.Leu638Ile	p.L638I	ENST00000380036	NM_000459.3	638	Ctt/Att																																																																														
TEK	7010	MSKCC	GRCh37	9	27202926	27202926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772637203		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	93	437	0	ENST00000380036.4:c.2018G>A	p.Arg673His	p.R673H	ENST00000380036	NM_000459.3	673	cGt/cAt																																																																														
TEK	7010	MSKCC	GRCh37	9	27212792	27212792	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1291636206		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	137	814	0	ENST00000380036.4:c.2774C>T	p.Ala925Val	p.A925V	ENST00000380036	NM_000459.3	925	gCa/gTa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80336244	80336244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	89	270	0	ENST00000286548.4:c.1075G>A	p.Val359Ile	p.V359I	ENST00000286548	NM_002072.3	359	Gtc/Atc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80336303	80336303	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	71	372	1	ENST00000286548.4:c.1016T>A	p.Phe339Tyr	p.F339Y	ENST00000286548	NM_002072.3	339	tTt/tAt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285694	87285694	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78936193		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	80	634	0	ENST00000277120.3:c.31G>A	p.Ala11Thr	p.A11T	ENST00000277120		11	Gcc/Acc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317265	87317265	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	81	381	0	ENST00000277120.3:c.290C>T	p.Thr97Ile	p.T97I	ENST00000277120		97	aCa/aTa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87563530	87563530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	86	525	0	ENST00000277120.3:c.1918G>T	p.Asp640Tyr	p.D640Y	ENST00000277120		640	Gac/Tac																																																																														
SYK	6850	MSKCC	GRCh37	9	93650881	93650881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200438123		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	92	478	1	ENST00000375746.1:c.1807G>A	p.Asp603Asn	p.D603N	ENST00000375746	NM_001174167.1	603	Gat/Aat																																																																														
FANCC	2176	MSKCC	GRCh37	9	97897758	97897758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	38	414	1	ENST00000289081.3:c.713C>T	p.Ala238Val	p.A238V	ENST00000289081	NM_000136.2	238	gCt/gTt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209387	98209387	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146447673		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	50	631	0	ENST00000331920.6:c.4151C>T	p.Pro1384Leu	p.P1384L	ENST00000331920	NM_000264.3	1384	cCg/cTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209516	98209516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748609458		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	175	693	1	ENST00000331920.6:c.4022C>T	p.Pro1341Leu	p.P1341L	ENST00000331920	NM_000264.3	1341	cCt/cTt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211581	98211581	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs571420165		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	134	686	1	ENST00000331920.6:c.3574C>T	p.Arg1192Cys	p.R1192C	ENST00000331920	NM_000264.3	1192	Cgc/Tgc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98240450	98240450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370354759		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	38	447	1	ENST00000331920.6:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000331920	NM_000264.3	412	Gca/Aca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268775	98268775	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	60	643	0	ENST00000331920.6:c.308T>C	p.Val103Ala	p.V103A	ENST00000331920	NM_000264.3	103	gTt/gCt																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249660	110249660	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376327952		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	85	1043	0	ENST00000374672.4:c.1015G>A	p.Gly339Ser	p.G339S	ENST00000374672	NM_004235.4	339	Ggc/Agc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771698	135771698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751126355		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	233	656	1	ENST00000298552.3:c.3419C>T	p.Pro1140Leu	p.P1140L	ENST00000298552	NM_001162426.1	1140	cCg/cTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135796757	135796757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	60	294	0	ENST00000298552.3:c.730C>T	p.Pro244Ser	p.P244S	ENST00000298552	NM_001162426.1	244	Cct/Tct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390912	139390912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370722609		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	168	888	4	ENST00000277541.6:c.7279G>A	p.Gly2427Ser	p.G2427S	ENST00000277541	NM_017617.3	2427	Ggc/Agc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400051	139400052	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	178	894	0	ENST00000277541.6:c.4296_4297insA	p.Gly1433ArgfsTer46	p.G1433Rfs*46	ENST00000277541	NM_017617.3	1432	-/A																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1327743	1327743	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1319179000		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	100	673	0	ENST00000381566.1:c.138G>T	p.Trp46Cys	p.W46C	ENST00000381566		46	tgG/tgT																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1327796	1327796	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	57	510	1	ENST00000381566.1:c.85G>T	p.Gly29Ter	p.G29*	ENST00000381566		29	Gga/Tga																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15809119	15809119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	139	426	0	ENST00000307771.7:c.104C>T	p.Ala35Val	p.A35V	ENST00000307771	NM_005089.3	35	gCt/gTt																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15833978	15833978	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1388592969		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	165	629	0	ENST00000307771.7:c.736G>A	p.Glu246Lys	p.E246K	ENST00000307771	NM_005089.3	246	Gag/Aag																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841159	15841159	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752029553		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	107	465	0	ENST00000307771.7:c.1243C>T	p.Arg415Trp	p.R415W	ENST00000307771	NM_005089.3	415	Cgg/Tgg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933856	39933856	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771988446		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	65	802	1	ENST00000378444.4:c.743C>T	p.Pro248Leu	p.P248L	ENST00000378444	NM_001123385.1	248	cCg/cTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820536	44820536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772197961		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	36	271	0	ENST00000377967.4:c.233G>A	p.Arg78His	p.R78H	ENST00000377967	NM_021140.2	78	cGc/cAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44911008	44911008	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs142139890		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	15	283	0	ENST00000377967.4:c.709C>A	p.Leu237Ile	p.L237I	ENST00000377967	NM_021140.2	237	Ctt/Att																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928872	44928872	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs755440519		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	72	388	0	ENST00000377967.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000377967	NM_021140.2	658	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038791	47038791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	221	873	2	ENST00000329236.7:c.567C>A	p.Ser189Arg	p.S189R	ENST00000329236	NM_001204466.1	189	agC/agA																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045569	47045569	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	73	579	1	ENST00000329236.7:c.2302G>A	p.Val768Ile	p.V768I	ENST00000329236	NM_001204466.1	768	Gta/Ata																																																																														
ARAF	369	MSKCC	GRCh37	X	47426690	47426690	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	132	870	0	ENST00000377045.4:c.935T>A	p.Leu312Gln	p.L312Q	ENST00000377045	NM_001654.4	312	cTg/cAg																																																																														
ARAF	369	MSKCC	GRCh37	X	47430843	47430843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	181	678	2	ENST00000377045.4:c.1808G>A	p.Arg603His	p.R603H	ENST00000377045	NM_001654.4	603	cGc/cAc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226001	53226001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	151	911	0	ENST00000375401.3:c.2848A>G	p.Met950Val	p.M950V	ENST00000375401	NM_004187.3	950	Atg/Gtg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53231092	53231092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	118	725	0	ENST00000375401.3:c.1810G>A	p.Gly604Ser	p.G604S	ENST00000375401	NM_004187.3	604	Ggc/Agc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246390	53246390	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	133	785	1	ENST00000375401.3:c.592C>T	p.Arg198Ter	p.R198*	ENST00000375401	NM_004187.3	198	Cga/Tga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247106	53247106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	118	568	2	ENST00000375401.3:c.394C>T	p.Arg132Cys	p.R132C	ENST00000375401	NM_004187.3	132	Cgt/Tgt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247112	53247112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	52	548	0	ENST00000375401.3:c.388A>G	p.Lys130Glu	p.K130E	ENST00000375401	NM_004187.3	130	Aag/Gag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411104	63411104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1395903458		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	145	676	0	ENST00000330258.3:c.2063C>T	p.Thr688Ile	p.T688I	ENST00000330258	NM_152424.3	688	aCt/aTt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413094	63413094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	96	800	1	ENST00000330258.3:c.73G>T	p.Ala25Ser	p.A25S	ENST00000330258	NM_152424.3	25	Gca/Tca																																																																														
AR	367	MSKCC	GRCh37	X	66765047	66765047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1297947716		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	235	917	2	ENST00000374690.3:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000374690	NM_000044.3	20	cGa/cAa																																																																														
AR	367	MSKCC	GRCh37	X	66765406	66765406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1214854933		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	114	713	2	ENST00000374690.3:c.418G>A	p.Ala140Thr	p.A140T	ENST00000374690	NM_000044.3	140	Gcc/Acc																																																																														
AR	367	MSKCC	GRCh37	X	66766421	66766421	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs760558682		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	24	222	0	ENST00000374690.3:c.1433T>C	p.Val478Ala	p.V478A	ENST00000374690	NM_000044.3	478	gTa/gCa																																																																														
MED12	9968	MSKCC	GRCh37	X	70349253	70349253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	207	843	5	ENST00000374080.3:c.3665C>T	p.Ala1222Val	p.A1222V	ENST00000374080		1222	gCt/gTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76854952	76854952	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	109	631	0	ENST00000373344.5:c.5884T>C	p.Ser1962Pro	p.S1962P	ENST00000373344	NM_000489.3	1962	Tct/Cct																																																																														
ATRX	546	MSKCC	GRCh37	X	76931733	76931733	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	77	319	0	ENST00000373344.5:c.3797A>C	p.Asp1266Ala	p.D1266A	ENST00000373344	NM_000489.3	1266	gAt/gCt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937537	76937537	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143621153		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	13	255	0	ENST00000373344.5:c.3211G>A	p.Gly1071Arg	p.G1071R	ENST00000373344	NM_000489.3	1071	Gga/Aga																																																																														
ATRX	546	MSKCC	GRCh37	X	76937678	76937678	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	43	324	0	ENST00000373344.5:c.3070G>T	p.Glu1024Ter	p.E1024*	ENST00000373344	NM_000489.3	1024	Gaa/Taa																																																																														
XIAP	331	MSKCC	GRCh37	X	123019547	123019547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	28	321	0	ENST00000355640.3:c.35G>A	p.Cys12Tyr	p.C12Y	ENST00000355640		12	tGt/tAt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220483	123220483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	147	591	0	ENST00000218089.9:c.3140C>A	p.Ser1047Tyr	p.S1047Y	ENST00000218089	NM_001042749.1	1047	tCt/tAt																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860059	152860059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	54	677	0	ENST00000406277.2:c.369G>T	p.Glu123Asp	p.E123D	ENST00000406277	NM_152274.4	123	gaG/gaT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2957006	2957006	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1175860108		P-0040023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	90	464	2	ENST00000396946.4:c.2621C>T	p.Pro874Leu	p.P874L	ENST00000396946	NM_032415.4	874	cCa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0040027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	376	852	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114905824	114905843	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGCTCTGACCGTCAATG	CACAGCTCTGACCGTCAATG	-			P-0040027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	105	638	0	ENST00000543371.1:c.844_863del	p.Thr282PhefsTer39	p.T282Ffs*39	ENST00000543371	NM_001198531.1	281	ccCACAGCTCTGACCGTCAATGct/ccct																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467088	25467088	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs899717364		P-0040027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	166	835	0	ENST00000264709.3:c.1787G>A	p.Arg596Gln	p.R596Q	ENST00000264709	NM_175629.2	596	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112116553	112116554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	115	351	0	ENST00000257430.4:c.599dup	p.Met200IlefsTer52	p.M200Ifs*52	ENST00000257430	NM_000038.5	200	atg/aTtg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	146	257	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	272	676	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138376590	138376590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	82	416	0	ENST00000289153.2:c.2884T>A	p.Tyr962Asn	p.Y962N	ENST00000289153	NM_006219.2	962	Tat/Aat																																																																														
BCL2	596	MSKCC	GRCh37	18	60985471	60985471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	130	579	2	ENST00000333681.4:c.429C>A	p.Asn143Lys	p.N143K	ENST00000333681		143	aaC/aaA																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881711	111881711	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	218	491	1	ENST00000393256.3:c.389del	p.Ala130GlufsTer5	p.A130Efs*5	ENST00000393256	NM_006538.4	130	gCa/ga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593303	67593324	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTATAACTTGTACAGCTCT	GCCCTATAACTTGTACAGCTCT	-			P-0040136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	50	299	1	ENST00000274335.5:c.2049_2070del	p.Glu683AspfsTer2	p.E683Dfs*2	ENST00000274335		683	gaGCCCTATAACTTGTACAGCTCT/ga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0040146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	86	415	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	33	356	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0040146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	12	348	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088672	27088672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	68	677	0	ENST00000324856.7:c.2281C>T	p.Gln761Ter	p.Q761*	ENST00000324856	NM_006015.4	761	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112177043	112177043	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs776966222		P-0040146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	46	415	0	ENST00000257430.4:c.5752A>G	p.Ile1918Val	p.I1918V	ENST00000257430	NM_000038.5	1918	Ata/Gta																																																																														
MED12	9968	MSKCC	GRCh37	X	70339329	70339329	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0040146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	52	445	0	ENST00000374080.3:c.204+2T>A		p.X68_splice	ENST00000374080		68																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0040260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	134	529	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0040260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	103	297	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370985	55370985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	536	704	0	ENST00000297316.4:c.287C>G	p.Ala96Gly	p.A96G	ENST00000297316	NM_022454.3	96	gCc/gGc																																																																														
MED12	9968	MSKCC	GRCh37	X	70338671	70338671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	210	838	0	ENST00000374080.3:c.67G>T	p.Asp23Tyr	p.D23Y	ENST00000374080		23	Gat/Tat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685315	89685316	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0040260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	125	204	0	ENST00000371953.3:c.209+2dup		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149465980	149465980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	259	902	0	ENST00000286301.3:c.11G>A	p.Gly4Glu	p.G4E	ENST00000286301	NM_005211.3	4	gGa/gAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099064	27099064	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	315	591	1	ENST00000324856.7:c.3482del	p.Lys1161SerfsTer19	p.K1161Sfs*19	ENST00000324856	NM_006015.4	1160	ttA/tt																																																																														
TET1	80312	MSKCC	GRCh37	10	70406664	70406664	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	62	563	0	ENST00000373644.4:c.4178A>C	p.Lys1393Thr	p.K1393T	ENST00000373644	NM_030625.2	1393	aAa/aCa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486854	56486854	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	125	474	0	ENST00000267101.3:c.1268T>A	p.Leu423His	p.L423H	ENST00000267101	NM_001982.3	423	cTc/cAc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244538	41244538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	114	513	0	ENST00000357654.3:c.3010G>A	p.Glu1004Lys	p.E1004K	ENST00000357654	NM_007294.3	1004	Gag/Aag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245003	41245003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	133	658	0	ENST00000357654.3:c.2545G>A	p.Glu849Lys	p.E849K	ENST00000357654	NM_007294.3	849	Gaa/Aaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246785	41246785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	131	469	0	ENST00000357654.3:c.763G>A	p.Glu255Lys	p.E255K	ENST00000357654	NM_007294.3	255	Gag/Aag																																																																														
CDK6	1021	MSKCC	GRCh37	7	92252362	92252362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	65	242	0	ENST00000265734.4:c.686G>A	p.Gly229Glu	p.G229E	ENST00000265734	NM_001259.6	229	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0040280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	268	681	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591140	67591145	+	inframe_deletion	In_Frame_Del	DEL	ACCAAT	ACCAAT	-	rs751582616		P-0040280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	137	361	0	ENST00000274335.5:c.1735_1740del	p.Gln579_Tyr580del	p.Q579_Y580del	ENST00000274335		578	gACCAATac/gac																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139802645	139802645	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762052203		P-0040280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	49	650	0	ENST00000247668.2:c.490C>T	p.Arg164Trp	p.R164W	ENST00000247668	NM_021138.3	164	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883113	37883113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780434636		P-0040280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	282	819	1	ENST00000269571.5:c.3016C>T	p.Arg1006Cys	p.R1006C	ENST00000269571		1006	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105882	27105883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0040280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	353	623	0	ENST00000324856.7:c.5495_5496dup	p.Arg1833GlyfsTer51	p.R1833Gfs*51	ENST00000324856	NM_006015.4	1831	-/GG																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593284	67593285	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCTA			P-0040280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	101	368	0	ENST00000274335.5:c.2036_2041dup	p.Tyr679_Gly680dup	p.Y679_G680dup	ENST00000274335		679	act/acTGGCTAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053237	180053237	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372947534		P-0040280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	279	795	0	ENST00000261937.6:c.1132C>T	p.Arg378Cys	p.R378C	ENST00000261937	NM_182925.4	378	Cgc/Tgc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32802947	32802947	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	106	425	0	ENST00000374899.4:c.929A>G	p.Tyr310Cys	p.Y310C	ENST00000374899	NM_018833.2	310	tAc/tGc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650438	48650438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	178	914	0	ENST00000376670.3:c.408G>C	p.Leu136Phe	p.L136F	ENST00000376670	NM_002049.3	136	ttG/ttC																																																																														
ATRX	546	MSKCC	GRCh37	X	76937587	76937587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	17	389	0	ENST00000373344.5:c.3161C>A	p.Ser1054Tyr	p.S1054Y	ENST00000373344	NM_000489.3	1054	tCt/tAt																																																																														
ATM	472	MSKCC	GRCh37	11	108204640	108204640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	14	313	0	ENST00000278616.4:c.7955C>G	p.Pro2652Arg	p.P2652R	ENST00000278616	NM_000051.3	2652	cCa/cGa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0040296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	16	499	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0040296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	25	418	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs760043106		P-0040315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	71	563	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571903	64571903	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	148	805	0	ENST00000337652.1:c.1751T>A	p.Leu584His	p.L584H	ENST00000337652	NM_130803.2	584	cTc/cAc																																																																														
MSI2	124540	MSKCC	GRCh37	17	55693361	55693361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	103	596	0	ENST00000284073.2:c.568G>A	p.Val190Ile	p.V190I	ENST00000284073	NM_138962.2	190	Gtc/Atc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	111	267	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	127	472	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	30	165	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175897	112175897	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	35	143	0	ENST00000257430.4:c.4606G>T	p.Glu1536Ter	p.E1536*	ENST00000257430	NM_000038.5	1536	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720711	89720711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	33	63	0	ENST00000371953.3:c.862G>T	p.Glu288Ter	p.E288*	ENST00000371953	NM_000314.4	288	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108121669	108121669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750280306		P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	55	298	1	ENST00000278616.4:c.1477C>T	p.Arg493Cys	p.R493C	ENST00000278616	NM_000051.3	493	Cgt/Tgt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005429	29005429	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372354806		P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	23	210	0	ENST00000282397.4:c.832G>A	p.Val278Ile	p.V278I	ENST00000282397	NM_002019.4	278	Gta/Ata																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509128	66509128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1439062174		P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	23	205	1	ENST00000273854.3:c.199C>T	p.Arg67Cys	p.R67C	ENST00000273854	NM_004439.5	67	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108186602	108186602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	26	212	0	ENST00000278616.4:c.6059G>A	p.Gly2020Asp	p.G2020D	ENST00000278616	NM_000051.3	2020	gGc/gAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822034	72822039	+	inframe_deletion	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	rs772077493		P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	41	245	0	ENST00000268489.5:c.10136_10141del	p.Gln3379_Gln3380del	p.Q3379_Q3380del	ENST00000268489	NM_006885.3	3379	cAGCAGCgg/cgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41513386	41513386	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	39	402	0	ENST00000263253.7:c.290T>G	p.Val97Gly	p.V97G	ENST00000263253	NM_001429.3	97	gTt/gGt																																																																														
POLE	5426	MSKCC	GRCh37	12	133220541	133220541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	207	459	0	ENST00000320574.5:c.4172C>T	p.Ser1391Phe	p.S1391F	ENST00000320574	NM_006231.2	1391	tCc/tTc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266960	18266960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752430880		P-0040548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	134	164	0	ENST00000222254.8:c.271C>T	p.Arg91Trp	p.R91W	ENST00000222254	NM_005027.3	91	Cgg/Tgg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0040635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	95	300	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0040635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	115	602	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	123	608	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																														
BCL2	596	MSKCC	GRCh37	18	60985441	60985441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	54	701	0	ENST00000333681.4:c.459C>A	p.Phe153Leu	p.F153L	ENST00000333681		153	ttC/ttA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884502	151884502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	52	385	0	ENST00000262189.6:c.4853C>T	p.Ser1618Leu	p.S1618L	ENST00000262189	NM_170606.2	1618	tCa/tTa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542552	141542552	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1382113944		P-0040635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	107	639	0	ENST00000220592.5:c.2434C>T	p.Arg812Trp	p.R812W	ENST00000220592	NM_012154.3	812	Cgg/Tgg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519742		P-0040698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	337	761	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144113	11144113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	53	762	0	ENST00000344626.4:c.3694G>A	p.Gly1232Ser	p.G1232S	ENST00000344626	NM_003072.3	1232	Ggc/Agc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519961		P-0040698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	210	440	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	77	385	0				ENST00000310581	NM_198253.2																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519893		P-0040700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	197	912	1	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0040700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	174	628	1	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652198	36652199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	146	811	1	ENST00000244741.5:c.322dup	p.Glu108GlyfsTer21	p.E108Gfs*21	ENST00000244741	NM_000389.4	107	gag/gaGg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44910996	44910999	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0040700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	52	262	0	ENST00000377967.4:c.701_704del	p.Thr234ArgfsTer7	p.T234Rfs*7	ENST00000377967	NM_021140.2	233	CAGAca/ca																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982387	201982387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	76	866	0	ENST00000359651.3:c.766G>C	p.Glu256Gln	p.E256Q	ENST00000359651		256	Gag/Cag																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45391495	45391495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	37	434	0	ENST00000262160.6:c.665C>T	p.Pro222Leu	p.P222L	ENST00000262160	NM_005901.5	222	cCt/cTt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976923	18976923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	59	769	0	ENST00000262803.5:c.3308G>A	p.Gly1103Glu	p.G1103E	ENST00000262803	NM_002911.3	1103	gGa/gAa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806555	1806555	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	318	710	0	ENST00000260795.2:c.1271C>G	p.Ser424Cys	p.S424C	ENST00000260795		424	tCc/tGc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807874	1807874	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1472731505		P-0040700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	357	928	0	ENST00000260795.2:c.1933C>G	p.Leu645Val	p.L645V	ENST00000260795		645	Ctc/Gtc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0040719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	26	617	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0040719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	17	363	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
CCND1	595	MSKCC	GRCh37	11	69466027	69466041	+	inframe_deletion	In_Frame_Del	DEL	GACGTGCGGGACGTG	GACGTGCGGGACGTG	-			P-0040719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	19	777	1	ENST00000227507.2:c.868_882del	p.Val290_Asp294del	p.V290_D294del	ENST00000227507	NM_053056.2	289	GACGTGCGGGACGTG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	77	757	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																														
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0040746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	66	472	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974690	21974691	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0040746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	38	444	2	ENST00000304494.5:c.136_137delinsAA	p.Arg46Lys	p.R46K	ENST00000304494	NM_000077.4	46	CGg/AAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974690	21974691	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0040746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	38	444	2	ENST00000304494.5:c.136_137delinsAA	p.Arg46Lys	p.R46K	ENST00000304494	NM_000077.4	46	CGg/AAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	40	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	191	965	0	ENST00000269305.4:c.428T>C	p.Val143Ala	p.V143A	ENST00000269305	NM_001126112.2	143	gTg/gCg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891277	101891277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	85	512	0	ENST00000374994.4:c.238C>T	p.Arg80Ter	p.R80*	ENST00000374994	NM_004612.2	80	Cga/Tga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981163	201981165	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0040777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	230	811	0	ENST00000359651.3:c.246_248del	p.Lys82del	p.K82del	ENST00000359651		81	gAGAag/gag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420631	49420631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	156	710	0	ENST00000301067.7:c.15118G>T	p.Asp5040Tyr	p.D5040Y	ENST00000301067	NM_003482.3	5040	Gac/Tac																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457246	67457246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1343295267		P-0040777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	115	643	3	ENST00000327367.4:c.220C>T	p.Arg74Trp	p.R74W	ENST00000327367	NM_005902.3	74	Cgg/Tgg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016601	12016601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	51	393	1	ENST00000353533.5:c.737G>A	p.Cys246Tyr	p.C246Y	ENST00000353533	NM_003010.3	246	tGt/tAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	115	344	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	595	804	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	118	383	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937913	36937913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148747030		P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	125	849	2	ENST00000361632.4:c.923G>A	p.Arg308His	p.R308H	ENST00000361632		308	cGc/cAc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473708	67473708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs387906855		P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	288	582	1	ENST00000327367.4:c.788C>T	p.Pro263Leu	p.P263L	ENST00000327367	NM_005902.3	263	cCc/cTc																																																																														
RARA	5914	MSKCC	GRCh37	17	38487487	38487487	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1173565250		P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	34	377	0	ENST00000254066.5:c.17G>A	p.Ser6Asn	p.S6N	ENST00000254066	NM_000964.3	6	aGc/aAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023480	31023480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	280	498	0	ENST00000375687.4:c.2965T>C	p.Ser989Pro	p.S989P	ENST00000375687	NM_015338.5	989	Tct/Cct																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175547	+	frameshift_variant	Frame_Shift_Del	DEL	GGTAAGTGGCATTATAAG	GGTAAGTGGCATTATAAG	TATAACC			P-0040783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	118	309	2	ENST00000257430.4:c.4239_4256delinsTATAACC	p.Met1413IlefsTer6	p.M1413Ifs*6	ENST00000257430	NM_000038.5	1413	atGGTAAGTGGCATTATAAGc/atTATAACCc																																																																														
BLM	641	MSKCC	GRCh37	15	91292916	91292916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	99	466	0	ENST00000355112.3:c.418G>A	p.Glu140Lys	p.E140K	ENST00000355112	NM_000057.2	140	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	184	397	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	131	674	3	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0040854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	275	736	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
RET	5979	MSKCC	GRCh37	10	43614996	43614996	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs79658334		P-0040854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	116	724	1	ENST00000355710.3:c.2410G>C	p.Val804Leu	p.V804L	ENST00000355710	NM_020975.4	804	Gtg/Ctg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658295	18658295	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	223	479	0	ENST00000266497.5:c.3100C>G	p.Arg1034Gly	p.R1034G	ENST00000266497		1034	Cgt/Ggt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061730	38061730	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs770844920		P-0040854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	94	526	0	ENST00000250448.2:c.259G>C	p.Gly87Arg	p.G87R	ENST00000250448	NM_004496.3	87	Ggg/Cgg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	190	554	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577546	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCCCATGCAG	GCCGCCCATGCAG	-			P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	177	634	1	ENST00000269305.4:c.723_735del	p.Cys242Ter	p.C242*	ENST00000269305	NM_001126112.2	241	tcCTGCATGGGCGGC/tc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927964	49927964	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs539807742		P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	67	690	1	ENST00000296474.3:c.3764C>T	p.Ala1255Val	p.A1255V	ENST00000296474	NM_002447.2	1255	gCg/gTg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940931	49940931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	237	768	0	ENST00000296474.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000296474	NM_002447.2	38	Cgc/Tgc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71101768	71101768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	86	209	0	ENST00000318789.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000318789	NM_032682.5	144	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	29	443	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175552	112175552	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	100	415	0	ENST00000257430.4:c.4261del	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1421	Agt/gt																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs926053251		P-0040957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	191	610	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	24	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913530		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	62	317	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519891		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	59	450	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	70	659	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	89	270	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112170777	112170780	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	103	561	0	ENST00000257430.4:c.1875_1878del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	625	CAGAca/ca																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	117	647	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306568	41306568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	67	630	0	ENST00000373198.4:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000373198	NM_133170.3	364	cGa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937984	76937984	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373581602		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	45	447	0	ENST00000373344.5:c.2764G>A	p.Asp922Asn	p.D922N	ENST00000373344	NM_000489.3	922	Gat/Aat																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944836	31944836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148314204		P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	172	762	0	ENST00000340398.3:c.265G>A	p.Val89Ile	p.V89I	ENST00000340398	NM_001013699.2	89	Gtc/Atc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106352	27106352	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	62	602	0	ENST00000324856.7:c.5963T>A	p.Ile1988Asn	p.I1988N	ENST00000324856	NM_006015.4	1988	aTt/aAt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984365	201984366	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	154	607	0	ENST00000359651.3:c.1032_1033dup	p.Val345GlyfsTer103	p.V345Gfs*103	ENST00000359651		344	cgg/cGGgg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114905815	114905816	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0040977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	54	526	0	ENST00000543371.1:c.836_837del	p.Pro279LeufsTer48	p.P279Lfs*48	ENST00000543371	NM_001198531.1	278	caCCcc/cacc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843535	156843535	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369367198		P-0041012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	102	619	0	ENST00000524377.1:c.961G>A	p.Val321Met	p.V321M	ENST00000524377	NM_002529.3	321	Gtg/Atg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508473	106508473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1370328855		P-0041012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	45	219	0	ENST00000359195.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000359195	NM_002649.2	156	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0041012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	128	482	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
APC	324	MSKCC	GRCh37	5	112175346	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAA	TTGAA	-			P-0041012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	24	194	0	ENST00000257430.4:c.4057_4061del	p.Glu1353PhefsTer20	p.E1353Ffs*20	ENST00000257430	NM_000038.5	1352	gTTGAA/g																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831482	72831482	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	134	506	0	ENST00000268489.5:c.5099A>C	p.Asn1700Thr	p.N1700T	ENST00000268489	NM_006885.3	1700	aAc/aCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	162	752	2	ENST00000269305.4:c.273del	p.Trp91CysfsTer32	p.W91Cfs*32	ENST00000269305	NM_001126112.2	91	tgG/tg																																																																														
CD79B	974	MSKCC	GRCh37	17	62007557	62007557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	77	786	0	ENST00000392795.3:c.310T>C	p.Ser104Pro	p.S104P	ENST00000392795	NM_001039933.1	104	Tct/Cct																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976499	18976525	+	inframe_deletion	In_Frame_Del	DEL	CTCAGGGCGCCCTGACGCAGGGCTACA	CTCAGGGCGCCCTGACGCAGGGCTACA	-			P-0041035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	64	789	0	ENST00000262803.5:c.3149_3175del	p.Ser1050_Ile1059delinsPhe	p.S1050_I1059delinsF	ENST00000262803	NM_002911.3	1050	tCTCAGGGCGCCCTGACGCAGGGCTACAtc/ttc																																																																														
SESN1	27244	MSKCC	GRCh37	6	109321791	109321791	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs760197100		P-0041035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	30	551	0	ENST00000436639.2:c.632A>G	p.Asn211Ser	p.N211S	ENST00000436639	NM_014454.2	211	aAt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0041073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	131	314	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	123	546	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589586	67589591	+	inframe_deletion	In_Frame_Del	DEL	ATGAAT	ATGAAT	-			P-0041073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	71	203	0	ENST00000274335.5:c.1351_1356del	p.Glu451_Tyr452del	p.E451_Y452del	ENST00000274335		450	cATGAATat/cat																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119909	70119910	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	277	560	0	ENST00000245479.2:c.916dup	p.Val306GlyfsTer272	p.V306Gfs*272	ENST00000245479	NM_000346.3	304	ccg/ccGg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115110086	115110086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1314719430		P-0041073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	345	747	0	ENST00000257566.3:c.1792G>A	p.Gly598Arg	p.G598R	ENST00000257566	NM_016569.3	598	Gga/Aga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211939	36211939	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519283		P-0041073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	417	879	0	ENST00000222270.7:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000222270	NM_014727.1	564	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0041073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	34	476	0	ENST00000324856.7:c.3976_3977dup	p.Gln1327ArgfsTer155	p.Q1327Rfs*155	ENST00000324856	NM_006015.4	1324	tac/taCCc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104359302	104359302	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776578		P-0041073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	236	486	1	ENST00000369902.3:c.1022+1G>A		p.X341_splice	ENST00000369902	NM_016169.3	341																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100182	27100184	+	frameshift_variant	Frame_Shift_Del	DEL	GCA	GCA	CC			P-0041073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	81	461	0	ENST00000324856.7:c.3978_3980delinsCC	p.Gln1327ArgfsTer154	p.Q1327Rfs*154	ENST00000324856	NM_006015.4	1326	ccGCAg/ccCCg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436398	110436398	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	234	600	0	ENST00000375856.3:c.2003G>C	p.Gly668Ala	p.G668A	ENST00000375856	NM_003749.2	668	gGc/gCc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370954	55370954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	353	720	0	ENST00000297316.4:c.256C>A	p.Leu86Met	p.L86M	ENST00000297316	NM_022454.3	86	Ctg/Atg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370960	55370960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	361	719	1	ENST00000297316.4:c.262C>T	p.Gln88Ter	p.Q88*	ENST00000297316	NM_022454.3	88	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	45	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	64	466	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1238758086		P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	206	833	0	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482864	67482864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	183	479	0	ENST00000327367.4:c.1268G>T	p.Ser423Ile	p.S423I	ENST00000327367	NM_005902.3	423	aGt/aTt																																																																														
SRC	6714	MSKCC	GRCh37	20	36031708	36031708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	191	814	0	ENST00000358208.4:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000358208		513	Gag/Aag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117351	115117351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1234535767		P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	60	300	0	ENST00000257566.3:c.823G>A	p.Glu275Lys	p.E275K	ENST00000257566	NM_016569.3	275	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	29462635	29462635	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747611056		P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	158	796	1	ENST00000389048.3:c.2266G>A	p.Gly756Ser	p.G756S	ENST00000389048	NM_004304.4	756	Ggc/Agc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120291	70120292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	221	878	0	ENST00000245479.2:c.1294dup	p.Tyr432LeufsTer146	p.Y432Lfs*146	ENST00000245479	NM_000346.3	431	-/T																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371773	45371773	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	110	350	0	ENST00000262160.6:c.1218T>A	p.Tyr406Ter	p.Y406*	ENST00000262160	NM_005901.5	406	taT/taA																																																																														
MSH3	4437	MSKCC	GRCh37	5	79966007	79966007	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs772141055		P-0041123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	82	465	0	ENST00000265081.6:c.671G>T	p.Arg224Leu	p.R224L	ENST00000265081	NM_002439.4	224	cGg/cTg																																																																														
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	95	975	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
RHOA	387	MSKCC	GRCh37	3	49405870	49405870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	83	722	0	ENST00000418115.1:c.268G>A	p.Asp90Asn	p.D90N	ENST00000418115	NM_001664.2	90	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	274	748	0	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45871992	45871992	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	104	797	0	ENST00000391945.4:c.256G>C	p.Glu86Gln	p.E86Q	ENST00000391945	NM_000400.3	86	Gag/Cag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98248033	98248033	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	104	631	0	ENST00000331920.6:c.518A>T	p.Glu173Val	p.E173V	ENST00000331920	NM_000264.3	173	gAa/gTa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183655	10183655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	293	908	0	ENST00000256474.2:c.124G>A	p.Glu42Lys	p.E42K	ENST00000256474	NM_000551.3	42	Gag/Aag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434113	121434113	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	145	917	0	ENST00000257555.6:c.1004C>G	p.Ser335Ter	p.S335*	ENST00000257555		335	tCa/tGa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187408	38187408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1243215593		P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	88	396	1	ENST00000317025.8:c.1069C>T	p.Arg357Trp	p.R357W	ENST00000317025	NM_023034.1	357	Cgg/Tgg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547265	106547265	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587778623		P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	81	445	0	ENST00000369096.4:c.502C>G	p.Pro168Ala	p.P168A	ENST00000369096	NM_001198.3	168	Ccc/Gcc																																																																														
PARP1	142	MSKCC	GRCh37	1	226567340	226567340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	113	449	0	ENST00000366794.5:c.1546A>G	p.Ile516Val	p.I516V	ENST00000366794	NM_001618.3	516	Atc/Gtc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	238	378	0				ENST00000310581	NM_198253.2																																																																																
CHEK1	1111	MSKCC	GRCh37	11	125497550	125497550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	73	360	0	ENST00000428830.2:c.114G>T	p.Lys38Asn	p.K38N	ENST00000428830	NM_001114121.2	38	aaG/aaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427027	49427034	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGCCC	GGGGGCCC	-			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	114	803	2	ENST00000301067.7:c.11454_11461del	p.Gln3821SerfsTer188	p.Q3821Sfs*188	ENST00000301067	NM_003482.3	3818	ttGGGCCCCCag/ttag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32899228	32899228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	90	276	0	ENST00000380152.3:c.332A>G	p.Asn111Ser	p.N111S	ENST00000380152		111	aAt/aGt																																																																														
RAF1	5894	MSKCC	GRCh37	3	12660066	12660066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	251	586	0	ENST00000251849.4:c.155C>G	p.Ser52Cys	p.S52C	ENST00000251849	NM_002880.3	52	tCt/tGt																																																																														
FANCC	2176	MSKCC	GRCh37	9	97887394	97887394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	101	632	0	ENST00000289081.3:c.970G>A	p.Glu324Lys	p.E324K	ENST00000289081	NM_000136.2	324	Gaa/Aaa																																																																														
AR	367	MSKCC	GRCh37	X	66765136	66765277	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGCGCCAGTTTGCTGCTGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGACTAGCCCCAGGCAGCAGCAGCAGCAGCAGGGTGAGGATGGTTCTC	CCCGGCGCCAGTTTGCTGCTGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGACTAGCCCCAGGCAGCAGCAGCAGCAGCAGGGTGAGGATGGTTCTC	-			P-0041147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	387	326	0	ENST00000374690.3:c.151_292del	p.Gly51LysfsTer77	p.G51Kfs*77	ENST00000374690	NM_000044.3	50	CCCGGCGCCAGTTTGCTGCTGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGACTAGCCCCAGGCAGCAGCAGCAGCAGCAGGGTGAGGATGGTTCTCcc/cc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	120	733	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	65	318	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	74	323	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	77	418	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
BLM	641	MSKCC	GRCh37	15	91358450	91358450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	201	581	0	ENST00000355112.3:c.4195A>G	p.Met1399Val	p.M1399V	ENST00000355112	NM_000057.2	1399	Atg/Gtg																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	142	483	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015055	37015055	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1414110836		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	119	586	1	ENST00000358127.4:c.349C>T	p.Arg117Trp	p.R117W	ENST00000358127	NM_001280556.1	117	Cgg/Tgg																																																																														
B2M	567	MSKCC	GRCh37	15	45007834	45007834	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	109	369	0	ENST00000558401.1:c.285del	p.Asp96MetfsTer7	p.D96Mfs*7	ENST00000558401	NM_004048.2	94	gAa/ga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	134	540	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	155	519	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	31	104	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491390	18491390	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1377942847		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	93	283	1	ENST00000266497.5:c.1309del	p.Ile437TyrfsTer5	p.I437Yfs*5	ENST00000266497		435	Aaa/aa																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	133	470	9	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	37	365	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	194	701	2	ENST00000340748.4:c.2152del	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354152	15354152	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs868796773		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	127	611	4	ENST00000263377.2:c.2728del	p.Gln910LysfsTer39	p.Q910Kfs*39	ENST00000263377	NM_058243.2	910	Caa/aa																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652297	48652297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	236	928	0	ENST00000376670.3:c.968G>A	p.Gly323Asp	p.G323D	ENST00000376670	NM_002049.3	323	gGc/gAc																																																																														
INHA	3623	MSKCC	GRCh37	2	220437288	220437288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1476801115		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	196	890	1	ENST00000243786.2:c.197del	p.Gly66AlafsTer61	p.G66Afs*61	ENST00000243786	NM_002191.3	64	ctG/ct																																																																														
INSR	3643	MSKCC	GRCh37	19	7170598	7170598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750676016		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	152	595	2	ENST00000302850.5:c.1433G>A	p.Arg478His	p.R478H	ENST00000302850	NM_000208.2	478	cGc/cAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	156	685	0	ENST00000245479.2:c.788dup	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412473	63412473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	201	801	0	ENST00000330258.3:c.694del	p.Gln232LysfsTer50	p.Q232Kfs*50	ENST00000330258	NM_152424.3	232	Caa/aa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953115	81953115	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1336595726		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	79	313	1	ENST00000359376.3:c.2081G>A	p.Arg694His	p.R694H	ENST00000359376	NM_002661.3	694	cGc/cAc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	171	729	5	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																														
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	187	596	2	ENST00000380036.4:c.1250del	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15838418	15838418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	123	408	0	ENST00000307771.7:c.916C>T	p.Arg306Trp	p.R306W	ENST00000307771	NM_005089.3	306	Cgg/Tgg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643503	38643503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057518683		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	150	502	2	ENST00000299084.4:c.973C>T	p.Arg325Ter	p.R325*	ENST00000299084	NM_152594.2	325	Cga/Tga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134569	2134569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1409601473		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	207	859	4	ENST00000219476.3:c.4351del	p.Arg1451AlafsTer25	p.R1451Afs*25	ENST00000219476	NM_000548.3	1449	tCc/tc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247442	71247442	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750746668		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	179	540	3	ENST00000318789.4:c.91G>A	p.Gly31Ser	p.G31S	ENST00000318789	NM_032682.5	31	Ggt/Agt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115251179	115251179	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	137	413	0	ENST00000369535.4:c.547G>T	p.Gly183Ter	p.G183*	ENST00000369535	NM_002524.4	183	Gga/Tga																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243293	123243293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	180	725	0	ENST00000358487.5:c.2220G>T	p.Trp740Cys	p.W740C	ENST00000358487	NM_000141.4	740	tgG/tgT																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138113	64138113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1449835853		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	207	695	3	ENST00000334205.4:c.2036C>T	p.Ala679Val	p.A679V	ENST00000334205	NM_003942.2	679	gCg/gTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118367045	118367045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	134	397	0	ENST00000534358.1:c.5627G>A	p.Cys1876Tyr	p.C1876Y	ENST00000534358	NM_005933.3	1876	tGt/tAt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	459914	459914	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	167	505	0	ENST00000399788.2:c.1181T>A	p.Phe394Tyr	p.F394Y	ENST00000399788	NM_001042603.1	394	tTt/tAt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865675	57865675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	228	830	1	ENST00000228682.2:c.3152C>T	p.Ala1051Val	p.A1051V	ENST00000228682	NM_005269.2	1051	gCt/gTt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121438970	121438970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	192	766	0	ENST00000257555.6:c.1871C>T	p.Thr624Ile	p.T624I	ENST00000257555		624	aCc/aTc																																																																														
CD276	80381	MSKCC	GRCh37	15	73995350	73995350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	74	311	0	ENST00000318443.5:c.656G>A	p.Ser219Asn	p.S219N	ENST00000318443	NM_001024736.1	219	aGc/aAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830424	72830424	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	27	357	0	ENST00000268489.5:c.6157G>C	p.Ala2053Pro	p.A2053P	ENST00000268489	NM_006885.3	2053	Gca/Cca																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347308	89347308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778263395		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	180	735	1	ENST00000301030.4:c.5642G>A	p.Gly1881Asp	p.G1881D	ENST00000301030	NM_001256183.1	1881	gGc/gAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78811769	78811769	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370002882		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	154	620	1	ENST00000306801.3:c.1184C>T	p.Thr395Met	p.T395M	ENST00000306801	NM_020761.2	395	aCg/aTg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976953	18976953	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764484697		P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	146	586	0	ENST00000262803.5:c.3338C>T	p.Thr1113Met	p.T1113M	ENST00000262803	NM_002911.3	1113	aCg/aTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956592	93956592	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	190	340	0	ENST00000369303.4:c.2644A>G	p.Lys882Glu	p.K882E	ENST00000369303	NM_004440.3	882	Aaa/Gaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984088	2984088	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	84	460	1	ENST00000396946.4:c.442C>T	p.Gln148Ter	p.Q148*	ENST00000396946	NM_032415.4	148	Caa/Taa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227684	53227684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	98	522	1	ENST00000375401.3:c.2504G>A	p.Gly835Asp	p.G835D	ENST00000375401	NM_004187.3	835	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	100	418	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0041214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	118	375	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115267880	115267880	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	158	577	0	ENST00000438362.2:c.1853A>G	p.Asn618Ser	p.N618S	ENST00000438362	NM_001242891.1	618	aAc/aGc																																																																														
RB1	5925	MSKCC	GRCh37	13	48953743	48953743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	139	270	0	ENST00000267163.4:c.1346G>A	p.Gly449Glu	p.G449E	ENST00000267163	NM_000321.2	449	gGa/gAa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73355856	73355856	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	261	385	0	ENST00000377767.4:c.115T>C	p.Cys39Arg	p.C39R	ENST00000377767	NM_014953.3	39	Tgt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0041271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	453	794	2	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244314	5244314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	206	686	2	ENST00000357368.4:c.1168G>A	p.Gly390Ser	p.G390S	ENST00000357368	NM_002850.3	390	Ggc/Agc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	490	310	0				ENST00000310581	NM_198253.2																																																																																
INHBA	3624	MSKCC	GRCh37	7	41739866	41739866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	110	522	1	ENST00000242208.4:c.107C>T	p.Pro36Leu	p.P36L	ENST00000242208	NM_002192.2	36	cCg/cTg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459453	50459453	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	139	312	0	ENST00000331340.3:c.742G>T	p.Glu248Ter	p.E248*	ENST00000331340	NM_006060.4	248	Gaa/Taa																																																																														
BRAF	673	MSKCC	GRCh37	7	140500166	140500166	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs775040765		P-0041271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	476	795	0	ENST00000288602.6:c.976A>G	p.Ile326Val	p.I326V	ENST00000288602	NM_004333.4	326	Att/Gtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	85	457	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	106	507	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	106	507	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	106	507	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882005		P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	118	611	2	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
ATM	472	MSKCC	GRCh37	11	108119687	108119687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	25	263	0	ENST00000278616.4:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000278616	NM_000051.3	365	Gag/Aag																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641058	23641058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	86	759	0	ENST00000261584.4:c.2417C>G	p.Pro806Arg	p.P806R	ENST00000261584	NM_024675.3	806	cCg/cGg																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96930920	96930920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	69	664	0	ENST00000258439.3:c.200G>A	p.Gly67Glu	p.G67E	ENST00000258439	NM_001193304.2	67	gGg/gAg																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137522025	137522025	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	27	275	0	ENST00000367739.4:c.854A>T	p.Lys285Met	p.K285M	ENST00000367739	NM_000416.2	285	aAg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151902215	151902215	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	52	543	0	ENST00000262189.6:c.3937G>T	p.Glu1313Ter	p.E1313*	ENST00000262189	NM_170606.2	1313	Gag/Tag																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22008934	22008934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	140	625	0	ENST00000276925.6:c.19G>A	p.Gly7Ser	p.G7S	ENST00000276925	NM_004936.3	7	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0041283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	520	919	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857047	9857047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs568622613		P-0041283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	55	425	0	ENST00000330684.3:c.4354C>T	p.Arg1452Cys	p.R1452C	ENST00000330684	NM_001134407.1	1452	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0041283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	274	403	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830778	72830778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781579217		P-0041283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	117	844	0	ENST00000268489.5:c.5803C>T	p.Arg1935Cys	p.R1935C	ENST00000268489	NM_006885.3	1935	Cgc/Tgc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434992	110434992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	478	836	0	ENST00000375856.3:c.3409C>T	p.Arg1137Cys	p.R1137C	ENST00000375856	NM_003749.2	1137	Cgc/Tgc																																																																														
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28933406		P-0041290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	13	743	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425589	49425589	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	36	802	0	ENST00000301067.7:c.12899del	p.Pro4300GlnfsTer84	p.P4300Qfs*84	ENST00000301067	NM_003482.3	4300	cCa/ca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831381	72831382	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	TTGTTA			P-0041290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	18	346	0	ENST00000268489.5:c.5199_5200insTAACAA	p.Gln1733_Gln1734insTer	p.Q1733_Q1734ins*	ENST00000268489	NM_006885.3	1733	-/TAACAA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	49	352	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397517202		P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	22	286	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	57	353	1	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	41	419	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs879255270		P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	96	469	1	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111168	193111168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1452051467		P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	37	250	0	ENST00000367435.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000367435	NM_024529.4	234	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672842	86672842	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	21	161	0	ENST00000274376.6:c.2329G>T	p.Glu777Ter	p.E777*	ENST00000274376	NM_002890.2	777	Gaa/Taa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258035	123258035	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	38	316	0	ENST00000358487.5:c.1646A>C	p.Asn549Thr	p.N549T	ENST00000358487	NM_000141.4	549	aAt/aCt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746152219		P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	112	405	0	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435289	121435289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371544082		P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	33	439	0	ENST00000257555.6:c.1322C>T	p.Thr441Met	p.T441M	ENST00000257555		441	aCg/aTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133253151	133253151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	36	378	0	ENST00000320574.5:c.890C>T	p.Ser297Phe	p.S297F	ENST00000320574	NM_006231.2	297	tCc/tTc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073692	8073692	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	33	308	0	ENST00000377482.5:c.967G>T	p.Glu323Ter	p.E323*	ENST00000377482	NM_018948.3	323	Gaa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210116	55210116	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs778638117		P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	35	300	0	ENST00000275493.2:c.226C>A	p.Leu76Ile	p.L76I	ENST00000275493	NM_005228.3	76	Ctt/Att																																																																														
CARM1	10498	MSKCC	GRCh37	19	11031170	11031170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	74	560	2	ENST00000327064.4:c.1255C>T	p.Arg419Trp	p.R419W	ENST00000327064	NM_199141.1	419	Cgg/Tgg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162743281	162743281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	22	207	0	ENST00000367921.3:c.1751G>A	p.Gly584Glu	p.G584E	ENST00000367921	NM_006182.2	584	gGa/gAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210808	36210808	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	61	651	0	ENST00000222270.7:c.559G>T	p.Glu187Ter	p.E187*	ENST00000222270	NM_014727.1	187	Gaa/Taa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514527	103514527	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	17	199	0	ENST00000355739.4:c.1028G>T	p.Arg343Ile	p.R343I	ENST00000355739	NM_000123.3	343	aGa/aTa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2215893	2215893	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370203279		P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	63	545	1	ENST00000326181.6:c.95C>T	p.Thr32Met	p.T32M	ENST00000326181	NM_032271.2	32	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542870	187542870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	30	266	0	ENST00000441802.2:c.4870G>T	p.Glu1624Ter	p.E1624*	ENST00000441802	NM_005245.3	1624	Gaa/Taa																																																																														
MPL	4352	MSKCC	GRCh37	1	43805116	43805116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	42	472	0	ENST00000372470.3:c.566C>T	p.Ala189Val	p.A189V	ENST00000372470	NM_005373.2	189	gCc/gTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717746	89717746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	37	298	0	ENST00000371953.3:c.771C>A	p.Phe257Leu	p.F257L	ENST00000371953	NM_000314.4	257	ttC/ttA																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640740	3640740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	42	529	0	ENST00000294008.3:c.2899G>A	p.Ala967Thr	p.A967T	ENST00000294008	NM_032444.2	967	Gca/Aca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419994	41419994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	61	454	1	ENST00000373198.4:c.327C>A	p.Phe109Leu	p.F109L	ENST00000373198	NM_133170.3	109	ttC/ttA																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902902	1902902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	46	475	0	ENST00000382891.5:c.521A>G	p.Lys174Arg	p.K174R	ENST00000382891	NM_133335.3	174	aAa/aGa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80024750	80024750	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs1379605717		P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	67	306	0	ENST00000265081.6:c.1534G>T	p.Glu512Ter	p.E512*	ENST00000265081	NM_002439.4	512	Gaa/Taa																																																																														
MET	4233	MSKCC	GRCh37	7	116339232	116339232	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	25	260	0	ENST00000397752.3:c.94A>C	p.Lys32Gln	p.K32Q	ENST00000397752	NM_000245.2	32	Aag/Cag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152008969	152008969	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	38	311	0	ENST00000262189.6:c.653A>G	p.Asp218Gly	p.D218G	ENST00000262189	NM_170606.2	218	gAt/gGt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217335	123217335	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs934233502		P-0041318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	42	446	0	ENST00000218089.9:c.2989T>G	p.Leu997Val	p.L997V	ENST00000218089	NM_001042749.1	997	Ttg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0041341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	34	570	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023007	27023008	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC	rs1266385064		P-0041341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	17	19	0	ENST00000324856.7:c.126_128dup	p.Ala45dup	p.A45dup	ENST00000324856	NM_006015.4	45	gag/gaGGCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0041341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	11	438	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519985		P-0041412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	36	837	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																														
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	45	283	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs587782082		P-0041420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	255	666	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																														
WT1	7490	MSKCC	GRCh37	11	32449535	32449535	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779813097		P-0041420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	182	830	0	ENST00000332351.3:c.839G>A	p.Ser280Asn	p.S280N	ENST00000332351	NM_024426.4	280	aGc/aAc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21624568	21624568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	28	417	0	ENST00000421138.2:c.1461G>T	p.Lys487Asn	p.K487N	ENST00000421138		487	aaG/aaT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341526	89341526	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	36	606	0	ENST00000301030.4:c.7544T>G	p.Leu2515Arg	p.L2515R	ENST00000301030	NM_001256183.1	2515	cTg/cGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101008	41101008	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	144	674	0	ENST00000373198.4:c.1348C>T	p.Arg450Ter	p.R450*	ENST00000373198	NM_133170.3	450	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041504-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			543	81	552	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0041504-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			561	75	466	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026864	6026864	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs74902811		P-0041504-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			637	40	571	0	ENST00000265849.7:c.1532C>T	p.Thr511Met	p.T511M	ENST00000265849	NM_000535.5	511	aCg/aTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933761	39933761	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763713717		P-0041504-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			579	83	669	0	ENST00000378444.4:c.838G>A	p.Val280Ile	p.V280I	ENST00000378444	NM_001123385.1	280	Gtc/Atc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438216	56438216	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041504-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			630	36	679	0	ENST00000407977.2:c.777G>A	p.Trp259Ter	p.W259*	ENST00000407977		259	tgG/tgA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023676	27023676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs867647567		P-0041504-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			285	17	251	0	ENST00000324856.7:c.782C>A	p.Ser261Ter	p.S261*	ENST00000324856	NM_006015.4	261	tCg/tAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720877	89720877	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0041504-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			494	41	404	0	ENST00000371953.3:c.1026+2T>A		p.X342_splice	ENST00000371953	NM_000314.4	342																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041504-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			330	42	187	0	ENST00000256196.4:c.68G>T	p.Gly23Val	p.G23V	ENST00000256196		23	gGc/gTc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158617533	158617533	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751000395		P-0041504-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			623	40	474	0	ENST00000263640.3:c.1123C>T	p.Arg375Cys	p.R375C	ENST00000263640	NM_001105.4	375	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs149680468		P-0041504-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			408	70	350	0	ENST00000281708.4:c.1513C>A	p.Arg505Ser	p.R505S	ENST00000281708	NM_033632.3	505	Cgc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099416	27099417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041504-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			475	108	585	0	ENST00000324856.7:c.3654dup	p.Asp1219Ter	p.D1219*	ENST00000324856	NM_006015.4	1218	tct/tcTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692855	89692855	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041504-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			235	23	175	0	ENST00000371953.3:c.339del	p.Ser113ArgfsTer21	p.S113Rfs*21	ENST00000371953	NM_000314.4	113	agT/ag																																																																														
MGA	23269	MSKCC	GRCh37	15	42003509	42003509	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041504-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			504	35	431	0	ENST00000219905.7:c.3046C>T	p.Arg1016Ter	p.R1016*	ENST00000219905	NM_001164273.1	1016	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	87	556	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	34	465	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RB1	5925	MSKCC	GRCh37	13	49030478	49030479	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	47	371	0	ENST00000267163.4:c.1959dup	p.Val654SerfsTer14	p.V654Sfs*14	ENST00000267163	NM_000321.2	651	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578460	+	frameshift_variant	Frame_Shift_Del	DEL	CGGA	CGGA	-			P-0041517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	92	720	0	ENST00000269305.4:c.470_473del	p.Val157AlafsTer12	p.V157Afs*12	ENST00000269305	NM_001126112.2	157	gTCCGc/gc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968937	15968937	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762318164		P-0041517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	49	497	0	ENST00000268712.3:c.4813G>A	p.Ala1605Thr	p.A1605T	ENST00000268712	NM_006311.3	1605	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7576868	7576868	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	392	567	0	ENST00000269305.4:c.978del	p.Glu326AspfsTer19	p.E326Dfs*19	ENST00000269305	NM_001126112.2	326	gaA/ga																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891308	101891308	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	343	574	0	ENST00000374994.4:c.269C>A	p.Ser90Ter	p.S90*	ENST00000374994	NM_004612.2	90	tCa/tAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117645564	117645564	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	249	535	0	ENST00000368508.3:c.5572C>G	p.Pro1858Ala	p.P1858A	ENST00000368508	NM_002944.2	1858	Cca/Gca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15975497	15975497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	272	492	0	ENST00000268712.3:c.3857T>C	p.Leu1286Pro	p.L1286P	ENST00000268712	NM_006311.3	1286	cTc/cCc																																																																														
BTK	695	MSKCC	GRCh37	X	100614300	100614300	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	350	250	0	ENST00000308731.7:c.875A>G	p.Glu292Gly	p.E292G	ENST00000308731	NM_000061.2	292	gAg/gGg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814915	139814924	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCCGGCA	GCAGCCGGCA	-			P-0041552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	214	536	0	ENST00000247668.2:c.911_920del	p.Ser304ThrfsTer11	p.S304Tfs*11	ENST00000247668	NM_021138.3	303	tGCAGCCGGCAg/tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0041586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	141	557	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs753660142		P-0041586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	99	643	1	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
JUN	3725	MSKCC	GRCh37	1	59247812	59247813	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0041586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	104	735	0	ENST00000371222.2:c.930_931del	p.Lys311SerfsTer6	p.K311Sfs*6	ENST00000371222	NM_002228.3	310	caGAaa/caaa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412453	63412453	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	50	415	0	ENST00000330258.3:c.714A>C	p.Lys238Asn	p.K238N	ENST00000330258	NM_152424.3	238	aaA/aaC																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724542	162724542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1041487062		P-0041586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	84	442	0	ENST00000367921.3:c.314G>A	p.Arg105His	p.R105H	ENST00000367921	NM_006182.2	105	cGc/cAc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15818054	15818054	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	48	161	0	ENST00000307771.7:c.181G>T	p.Glu61Ter	p.E61*	ENST00000307771	NM_005089.3	61	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	134	409	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	173	782	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	34	370	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	133	564	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	171	572	5	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308382	15308383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs749829137		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	162	798	1	ENST00000263388.2:c.125dup	p.Cys43LeufsTer32	p.C43Lfs*32	ENST00000263388	NM_000435.2	42	cct/ccCt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675562	30675562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769199645		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	250	861	0	ENST00000376406.3:c.2794G>A	p.Glu932Lys	p.E932K	ENST00000376406	NM_014641.2	932	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916728	178916728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	119	418	0	ENST00000263967.3:c.115G>A	p.Glu39Lys	p.E39K	ENST00000263967	NM_006218.2	39	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720741	89720741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs371387815		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	34	287	0	ENST00000371953.3:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000371953	NM_000314.4	298	Caa/Taa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771831816		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	122	541	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793677	89793677	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	116	395	1	ENST00000336032.3:c.752del	p.Lys251SerfsTer14	p.K251Sfs*14	ENST00000336032	NM_006813.2	249	gAa/ga																																																																														
ACVR1	90	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912678		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	102	361	1	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost,start_retained_variant	Frame_Shift_Del	DEL	T	T	-			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	124	452	2	ENST00000342788.4:c.1del	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	216	949	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	253	877	4	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
RB1	5925	MSKCC	GRCh37	13	48916851	48916851	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1131690902		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	104	295	2	ENST00000267163.4:c.380+1G>A		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	90	920	2	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420184	49420184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	209	761	2	ENST00000301067.7:c.15565G>A	p.Gly5189Arg	p.G5189R	ENST00000301067	NM_003482.3	5189	Gga/Aga																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372131	45372131	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	169	535	1	ENST00000262160.6:c.1038del	p.Phe346LeufsTer5	p.F346Lfs*5	ENST00000262160	NM_005901.5	346	ttT/tt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941844	71941844	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1204907315		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	151	620	0	ENST00000298229.2:c.1202G>A	p.Arg401Gln	p.R401Q	ENST00000298229	NM_001567.3	401	cGg/cAg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246903	10246903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	259	899	0	ENST00000340748.4:c.4502C>T	p.Pro1501Leu	p.P1501L	ENST00000340748		1501	cCc/cTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435472	110435472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751311445		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	63	733	0	ENST00000375856.3:c.2929G>A	p.Asp977Asn	p.D977N	ENST00000375856	NM_003749.2	977	Gac/Aac																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652330	206652330	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	207	872	2	ENST00000367120.3:c.1042del	p.Arg348AspfsTer32	p.R348Dfs*32	ENST00000367120	NM_014002.3	346	gCc/gc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258273	16258273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	229	690	1	ENST00000375759.3:c.5538G>T	p.Arg1846Ser	p.R1846S	ENST00000375759	NM_015001.2	1846	agG/agT																																																																														
ID3	3399	MSKCC	GRCh37	1	23885763	23885763	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769841287		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	220	792	0	ENST00000374561.5:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000374561	NM_002167.4	52	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097673	27097673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	204	639	0	ENST00000324856.7:c.3262G>A	p.Ala1088Thr	p.A1088T	ENST00000324856	NM_006015.4	1088	Gct/Act																																																																														
AKT3	10000	MSKCC	GRCh37	1	243777015	243777015	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	188	540	0	ENST00000263826.5:c.654del	p.Asp219ThrfsTer6	p.D219Tfs*6	ENST00000263826	NM_005465.4	218	aaA/aa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435391	18435391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	90	344	0	ENST00000266497.5:c.376T>C	p.Trp126Arg	p.W126R	ENST00000266497		126	Tgg/Cgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48939062	48939062	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	91	291	0	ENST00000267163.4:c.897del	p.Phe299LeufsTer2	p.F299Lfs*2	ENST00000267163	NM_000321.2	298	ccT/cc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95584078	95584078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	104	343	0	ENST00000343455.3:c.1390G>A	p.Ala464Thr	p.A464T	ENST00000343455	NM_177438.2	464	Gct/Act																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396386	396386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	244	855	0	ENST00000262320.3:c.640G>T	p.Gly214Cys	p.G214C	ENST00000262320	NM_003502.3	214	Ggc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831543	72831543	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	227	738	0	ENST00000268489.5:c.5038del	p.Leu1680Ter	p.L1680*	ENST00000268489	NM_006885.3	1680	Cta/ta																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438277	56438277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	206	880	0	ENST00000407977.2:c.716C>A	p.Ala239Asp	p.A239D	ENST00000407977		239	gCc/gAc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59878628	59878628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	84	304	0	ENST00000259008.2:c.1126C>A	p.Gln376Lys	p.Q376K	ENST00000259008	NM_032043.2	376	Caa/Aaa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221489	36221489	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	263	944	1	ENST00000222270.7:c.5248G>T	p.Glu1750Ter	p.E1750*	ENST00000222270	NM_014727.1	1750	Gag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229279	36229279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	218	801	0	ENST00000222270.7:c.7969C>T	p.Pro2657Ser	p.P2657S	ENST00000222270	NM_014727.1	2657	Ccc/Tcc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463512	25463512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	45	643	0	ENST00000264709.3:c.2170T>C	p.Tyr724His	p.Y724H	ENST00000264709	NM_175629.2	724	Tac/Cac																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279824	46279825	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAA	rs749655240		P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	57	520	0	ENST00000371998.3:c.3752_3753insACA	p.Gln1276dup	p.Q1276dup	ENST00000371998		1276	-/CAA																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22142620	22142620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	165	474	0	ENST00000215832.6:c.782G>A	p.Arg261Lys	p.R261K	ENST00000215832	NM_002745.4	261	aGg/aAg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168677	56168678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	149	445	0	ENST00000399503.3:c.1535dup	p.Ser513PhefsTer28	p.S513Ffs*28	ENST00000399503	NM_005921.1	511	tcc/tCcc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100295	157100296	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	83	283	0	ENST00000346085.5:c.1235dup	p.Ser413ValfsTer122	p.S413Vfs*122	ENST00000346085	NM_020732.3	411	cac/caCc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729727	41729727	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	146	578	1	ENST00000242208.4:c.802del	p.Glu268LysfsTer91	p.E268Kfs*91	ENST00000242208	NM_002192.2	268	Gaa/aa																																																																														
MET	4233	MSKCC	GRCh37	7	116417467	116417467	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	97	328	0	ENST00000397752.3:c.3284G>T	p.Gly1095Val	p.G1095V	ENST00000397752	NM_000245.2	1095	gGg/gTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020521	69020521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	188	616	0	ENST00000288368.4:c.2893A>G	p.Arg965Gly	p.R965G	ENST00000288368	NM_024870.2	965	Agg/Ggg																																																																														
ARAF	369	MSKCC	GRCh37	X	47428390	47428390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	215	794	0	ENST00000377045.4:c.1258C>A	p.Leu420Ile	p.L420I	ENST00000377045	NM_001654.4	420	Ctc/Atc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589578	67589583	+	inframe_deletion	In_Frame_Del	DEL	AAAATT	AAAATT	-			P-0041605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	39	214	0	ENST00000274335.5:c.1342_1347del	p.Lys448_Leu449del	p.K448_L449del	ENST00000274335		447	aaAAAATTa/aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81374361	81374361	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1476385169		P-0041605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	261	356	2	ENST00000222390.5:c.701G>A	p.Arg234His	p.R234H	ENST00000222390	NM_000601.4	234	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579578	7579582	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGC	ACGGC	-			P-0041605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	291	701	0	ENST00000269305.4:c.105_109del	p.Leu35PhefsTer6	p.L35Ffs*6	ENST00000269305	NM_001126112.2	35	ttGCCGTcc/ttcc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80343494	80343494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	23	420	0	ENST00000286548.4:c.825G>C	p.Lys275Asn	p.K275N	ENST00000286548	NM_002072.3	275	aaG/aaC																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039422	47039422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	173	624	1	ENST00000329236.7:c.814C>T	p.Gln272Ter	p.Q272*	ENST00000329236	NM_001204466.1	272	Cag/Tag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	81	254	2	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35860962	35860962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	66	267	0	ENST00000303115.3:c.91G>A	p.Glu31Lys	p.E31K	ENST00000303115	NM_002185.3	31	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT	rs121913227		P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	137	277	0	ENST00000288602.6:c.1798_1799delinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693002	89693003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	115	261	0	ENST00000371953.3:c.491dup	p.Val166SerfsTer14	p.V166Sfs*14	ENST00000371953	NM_000314.4	162	-/A																																																																														
ERG	2078	MSKCC	GRCh37	21	39755678	39755678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	189	614	0	ENST00000288319.7:c.1087G>A	p.Asp363Asn	p.D363N	ENST00000288319	NM_182918.3	363	Gat/Aat																																																																														
RAD21	5885	MSKCC	GRCh37	8	117869692	117869692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1337189031		P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	105	248	0	ENST00000297338.2:c.502C>T	p.Arg168Cys	p.R168C	ENST00000297338	NM_006265.2	168	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385271	41385271	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	135	469	0	ENST00000373198.4:c.690G>A	p.Trp230Ter	p.W230*	ENST00000373198	NM_133170.3	230	tgG/tgA																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504590	103504590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1400329743		P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	73	171	0	ENST00000355739.4:c.211C>T	p.Arg71Cys	p.R71C	ENST00000355739	NM_000123.3	71	Cgt/Tgt																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267600971		P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	192	749	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8497265	8497265	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1270795879		P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	39	146	0	ENST00000356435.5:c.2326G>A	p.Glu776Lys	p.E776K	ENST00000356435		776	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1272338	1272338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	189	770	1	ENST00000310581.5:c.2344G>A	p.Glu782Lys	p.E782K	ENST00000310581	NM_198253.2	782	Gag/Aag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244889	46244889	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	165	514	0	ENST00000334344.6:c.2983C>T	p.Gln995Ter	p.Q995*	ENST00000334344	NM_152641.2	995	Caa/Taa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281506	15281506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	179	786	0	ENST00000263388.2:c.4867C>T	p.Pro1623Ser	p.P1623S	ENST00000263388	NM_000435.2	1623	Ccg/Tcg																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225582	26225582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752115135		P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	185	504	0	ENST00000360408.1:c.200C>T	p.Pro67Leu	p.P67L	ENST00000360408	NM_003532.2	67	cCg/cTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76937185	76937185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	57	287	0	ENST00000373344.5:c.3563C>T	p.Ser1188Phe	p.S1188F	ENST00000373344	NM_000489.3	1188	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228965	36228965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	198	693	0	ENST00000222270.7:c.7745C>T	p.Ser2582Leu	p.S2582L	ENST00000222270	NM_014727.1	2582	tCa/tTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530432	187530432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	92	254	0	ENST00000441802.2:c.10111C>T	p.His3371Tyr	p.H3371Y	ENST00000441802	NM_005245.3	3371	Cac/Tac																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782187	9782187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	346	582	0	ENST00000377346.4:c.2210C>T	p.Pro737Leu	p.P737L	ENST00000377346	NM_005026.3	737	cCc/cTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106165	27106165	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	293	545	0	ENST00000324856.7:c.5776G>T	p.Gly1926Ter	p.G1926*	ENST00000324856	NM_006015.4	1926	Gga/Tga																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46532683	46532683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	192	278	0	ENST00000262741.5:c.395C>T	p.Ser132Phe	p.S132F	ENST00000262741	NM_003629.3	132	tCc/tTc																																																																														
HRAS	3265	MSKCC	GRCh37	11	534244	534244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	208	752	0	ENST00000311189.7:c.79C>T	p.His27Tyr	p.H27Y	ENST00000311189		27	Cat/Tat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230438	46230439	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	64	262	0	ENST00000334344.6:c.772_772+1delinsAA		p.X258_splice	ENST00000334344	NM_152641.2	258																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856236	111856236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	54	113	0	ENST00000341259.2:c.287C>T	p.Pro96Leu	p.P96L	ENST00000341259	NM_005475.2	96	cCc/cTc																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647653	2647653	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	169	468	0	ENST00000342085.4:c.1556C>A	p.Pro519His	p.P519H	ENST00000342085	NM_002613.4	519	cCt/cAt																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128591	30128591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	128	434	1	ENST00000263025.4:c.791C>T	p.Pro264Leu	p.P264L	ENST00000263025	NM_002746.2	264	cCa/cTa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56414806	56414807	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	155	504	1	ENST00000348428.3:c.2207_2208delinsTA	p.Pro736Leu	p.P736L	ENST00000348428	NM_006785.3	736	cCT/cTA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212197	36212197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	238	679	0	ENST00000222270.7:c.1948C>T	p.Pro650Ser	p.P650S	ENST00000222270	NM_014727.1	650	Cct/Tct																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213299	39213299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	244	749	0	ENST00000402219.2:c.3668C>T	p.Pro1223Leu	p.P1223L	ENST00000402219	NM_005633.3	1223	cCt/cTt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793363	242793364	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	205	853	1	ENST00000334409.5:c.713_714delinsTT	p.Pro238Leu	p.P238L	ENST00000334409	NM_005018.2	238	cCC/cTT																																																																														
PAK7	0	MSKCC	GRCh37	20	9546773	9546773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	100	347	0	ENST00000353224.5:c.1249G>A	p.Gly417Ser	p.G417S	ENST00000353224	NM_177990.2	417	Ggc/Agc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755735	39755735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	156	483	0	ENST00000288319.7:c.1030C>T	p.Pro344Ser	p.P344S	ENST00000288319	NM_182918.3	344	Ccc/Tcc																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72897364	72897364	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	113	408	0	ENST00000325599.8:c.128A>C	p.Lys43Thr	p.K43T	ENST00000325599	NM_018130.2	43	aAg/aCg																																																																														
KDR	3791	MSKCC	GRCh37	4	55953865	55953865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	193	338	0	ENST00000263923.4:c.3571G>A	p.Gly1191Arg	p.G1191R	ENST00000263923	NM_002253.2	1191	Gga/Aga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539623	187539624	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	68	264	0	ENST00000441802.2:c.8116_8117delinsTT	p.Pro2706Phe	p.P2706F	ENST00000441802	NM_005245.3	2706	CCt/TTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628821	187628821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	152	563	0	ENST00000441802.2:c.2161C>T	p.Pro721Ser	p.P721S	ENST00000441802	NM_005245.3	721	Ccg/Tcg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910803	29910803	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs41543912		P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	67	166	0	ENST00000376809.5:c.343G>A	p.Gly115Ser	p.G115S	ENST00000376809	NM_002116.7	115	Ggt/Agt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821536	32821536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	216	783	1	ENST00000354258.4:c.58C>T	p.Pro20Ser	p.P20S	ENST00000354258	NM_000593.5	20	Ccg/Tcg																																																																														
TEK	7010	MSKCC	GRCh37	9	27157954	27157954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	170	558	0	ENST00000380036.4:c.178G>A	p.Asp60Asn	p.D60N	ENST00000380036	NM_000459.3	60	Gac/Aac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933563	39933563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	194	604	0	ENST00000378444.4:c.1036C>T	p.Pro346Ser	p.P346S	ENST00000378444	NM_001123385.1	346	Ccc/Tcc																																																																														
MED12	9968	MSKCC	GRCh37	X	70357059	70357060	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	215	780	1	ENST00000374080.3:c.5574_5575delinsTT	p.Arg1859Cys	p.R1859C	ENST00000374080		1858	taCCgt/taTTgt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123164974	123164974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0041938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	47	166	0	ENST00000218089.9:c.287A>G	p.Gln96Arg	p.Q96R	ENST00000218089	NM_001042749.1	96	cAg/cGg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060639	38060639	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	72	884	0	ENST00000250448.2:c.1350C>G	p.Ile450Met	p.I450M	ENST00000250448	NM_004496.3	450	atC/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0042017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	246	723	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0042017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	132	361	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265046	46265046	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs575619475		P-0042017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	576	514	0	ENST00000371998.3:c.1916A>G	p.Asn639Ser	p.N639S	ENST00000371998		639	aAc/aGc																																																																														
APC	324	MSKCC	GRCh37	5	112175339	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGCTGTTGAA	AAAGCTGTTGAA	G			P-0042017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	30	221	0	ENST00000257430.4:c.4048_4059delinsG	p.Lys1350ValfsTer21	p.K1350Vfs*21	ENST00000257430	NM_000038.5	1350	AAAGCTGTTGAA/G																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0042137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	133	686	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229069	36229069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	151	985	1	ENST00000222270.7:c.7849C>T	p.Arg2617Trp	p.R2617W	ENST00000222270	NM_014727.1	2617	Cgg/Tgg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38282202	38282202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	64	823	1	ENST00000425967.3:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000425967	NM_001174067.1	285	cGg/cAg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858895	57858895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0042137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	212	725	0	ENST00000228682.2:c.391C>T	p.Pro131Ser	p.P131S	ENST00000228682	NM_005269.2	131	Cca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578259	7578259	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	237	821	0	ENST00000269305.4:c.590del	p.Val197GlyfsTer50	p.V197Gfs*50	ENST00000269305	NM_001126112.2	197	gTg/gg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0042161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	79	441	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509420	106509420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs864622026		P-0042161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	125	708	0	ENST00000359195.3:c.1414C>T	p.Arg472Cys	p.R472C	ENST00000359195	NM_002649.2	472	Cgt/Tgt																																																																														
BTK	695	MSKCC	GRCh37	X	100611108	100611108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	122	754	0	ENST00000308731.7:c.1498G>A	p.Glu500Lys	p.E500K	ENST00000308731	NM_000061.2	500	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0042161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	67	456	0	ENST00000371953.3:c.48T>G	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taG																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711892	89711892	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121909221		P-0042161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	132	464	0	ENST00000371953.3:c.510T>A	p.Ser170Arg	p.S170R	ENST00000371953	NM_000314.4	170	agT/agA																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563357	21563357	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185326327		P-0042161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	147	1001	0	ENST00000382592.4:c.562G>A	p.Gly188Ser	p.G188S	ENST00000382592	NM_014572.2	188	Ggt/Agt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023932	27023939	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCG	GGCGGCCG	-			P-0042161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	26	78	0	ENST00000324856.7:c.1038_1045del	p.Ala347LeufsTer50	p.A347Lfs*50	ENST00000324856	NM_006015.4	346	gcGGCGGCCGcc/gccc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458895	120458896	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0042161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	113	798	0	ENST00000256646.2:c.6449_6450del	p.Pro2150ArgfsTer2	p.P2150Rfs*2	ENST00000256646	NM_024408.3	2150	cCT/c																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591081	67591082	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATTGACAAACGTATGAACAGCATT			P-0042161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	43	355	0	ENST00000274335.5:c.1676_1699dup	p.Ile559_Ile566dup	p.I559_I566dup	ENST00000274335		559	-/ATTGACAAACGTATGAACAGCATT																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0042164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	13	226	1	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578453	7578453	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	259	865	0	ENST00000269305.4:c.477del	p.Met160TrpfsTer10	p.M160Wfs*10	ENST00000269305	NM_001126112.2	159	gcC/gc																																																																														
NF1	4763	MSKCC	GRCh37	17	29486027	29486027	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0042164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	107	253	0	ENST00000358273.4:c.205-1G>C		p.X69_splice	ENST00000358273	NM_001042492.2	69																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177641	56177641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	143	459	0	ENST00000399503.3:c.2614G>T	p.Gly872Cys	p.G872C	ENST00000399503	NM_005921.1	872	Ggc/Tgc																																																																														
SMO	6608	MSKCC	GRCh37	7	128850813	128850813	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	225	654	0	ENST00000249373.3:c.1662del	p.Gln555ArgfsTer14	p.Q555Rfs*14	ENST00000249373	NM_005631.4	554	Ggg/gg																																																																														
BRAF	673	MSKCC	GRCh37	7	140624412	140624412	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs397516906		P-0042164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	48	177	0	ENST00000288602.6:c.92C>G	p.Ala31Gly	p.A31G	ENST00000288602	NM_004333.4	31	gCc/gGc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128206856	128206856	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	85	432	0	ENST00000265960.3:c.1367C>G	p.Thr456Arg	p.T456R	ENST00000265960	NM_001006617.1	456	aCg/aGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	200	145	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	464	521	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225940	2225940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	378	461	0	ENST00000326181.6:c.1732G>A	p.Glu578Lys	p.E578K	ENST00000326181	NM_032271.2	578	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782006		P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	485	519	0	ENST00000269305.4:c.859G>A	p.Glu287Lys	p.E287K	ENST00000269305	NM_001126112.2	287	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	480	542	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789661	3789661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	264	342	0	ENST00000262367.5:c.4198G>C	p.Glu1400Gln	p.E1400Q	ENST00000262367	NM_004380.2	1400	Gag/Cag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225370822	225370822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1265558901		P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	38	231	0	ENST00000264414.4:c.1057G>A	p.Asp353Asn	p.D353N	ENST00000264414	NM_003590.4	353	Gat/Aat																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185161272	185161272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	141	360	0	ENST00000265026.3:c.699G>A	p.Met233Ile	p.M233I	ENST00000265026	NM_004721.4	233	atG/atA																																																																														
REL	5966	MSKCC	GRCh37	2	61149488	61149488	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1460557137		P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	71	198	0	ENST00000295025.8:c.1678G>C	p.Asp560His	p.D560H	ENST00000295025	NM_002908.2	560	Gat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099479	27099479	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	131	235	0	ENST00000324856.7:c.3715+1G>C		p.X1239_splice	ENST00000324856	NM_006015.4	1239																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27102067	27102068	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	171	346	0	ENST00000324856.7:c.4994-1_4994delinsTT		p.X1665_splice	ENST00000324856	NM_006015.4	1665																																																																															
NUF2	83540	MSKCC	GRCh37	1	163325131	163325131	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	75	139	0	ENST00000271452.3:c.1267T>A	p.Phe423Ile	p.F423I	ENST00000271452	NM_145697.2	423	Ttt/Att																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149245720	149245720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	232	332	0	ENST00000360632.3:c.808G>C	p.Glu270Gln	p.E270Q	ENST00000360632	NM_015472.4	270	Gag/Cag																																																																														
KDR	3791	MSKCC	GRCh37	4	55976821	55976821	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	197	360	1	ENST00000263923.4:c.1091G>A	p.Trp364Ter	p.W364*	ENST00000263923	NM_002253.2	364	tGg/tAg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016258	150016258	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	99	218	0	ENST00000253339.5:c.448C>T	p.Gln150Ter	p.Q150*	ENST00000253339		150	Cag/Tag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150022920	150022920	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	43	208	1	ENST00000253339.5:c.343G>C	p.Asp115His	p.D115H	ENST00000253339		115	Gat/Cat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405892	157405892	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	33	279	0	ENST00000346085.5:c.2134C>T	p.Gln712Ter	p.Q712*	ENST00000346085	NM_020732.3	712	Cag/Tag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411174	63411174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			9	245	205	0	ENST00000330258.3:c.1993G>T	p.Gly665Cys	p.G665C	ENST00000330258	NM_152424.3	665	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	87	586	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	52	321	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	91	574	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660469	67660469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	61	288	0	ENST00000264010.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000264010	NM_006565.3	457	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519943		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	62	405	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
MPL	4352	MSKCC	GRCh37	1	43803818	43803818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147938568		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	46	545	1	ENST00000372470.3:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000372470	NM_005373.2	43	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	65	409	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50481162	50481162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	63	315	0	ENST00000394963.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000394963	NM_003076.4	183	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776667		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	27	199	0	ENST00000371953.3:c.253+1G>A		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	11	212	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
MGA	23269	MSKCC	GRCh37	15	42021428	42021428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	53	332	1	ENST00000219905.7:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000219905	NM_001164273.1	1242	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267600319		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	45	220	0	ENST00000257430.4:c.4199C>T	p.Ser1400Leu	p.S1400L	ENST00000257430	NM_000038.5	1400	tCg/tTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622419	28622419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776699712		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	41	259	2	ENST00000241453.7:c.1198G>A	p.Gly400Arg	p.G400R	ENST00000241453	NM_004119.2	400	Gga/Aga																																																																														
ATRX	546	MSKCC	GRCh37	X	76939417	76939417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781932965		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	60	462	0	ENST00000373344.5:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000373344	NM_000489.3	444	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86649000	86649000	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755634472		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	25	183	1	ENST00000274376.6:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000274376	NM_002890.2	427	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662700	117662700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	41	297	0	ENST00000368508.3:c.4765G>A	p.Glu1589Lys	p.E1589K	ENST00000368508	NM_002944.2	1589	Gaa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863225264		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	73	373	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108205756	108205756	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531980488		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	40	257	0	ENST00000278616.4:c.8071C>T	p.Arg2691Cys	p.R2691C	ENST00000278616	NM_000051.3	2691	Cgc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	42003283	42003283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	38	439	0	ENST00000219905.7:c.2820G>T	p.Lys940Asn	p.K940N	ENST00000219905	NM_001164273.1	940	aaG/aaT																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87322770	87322770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781137734		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	26	243	0	ENST00000277120.3:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000277120		124	cGa/cAa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	55	202	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011200	12011200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	30	197	0	ENST00000353533.5:c.607G>T	p.Glu203Ter	p.E203*	ENST00000353533	NM_003010.3	203	Gaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710983	117710983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	37	148	0	ENST00000368508.3:c.1289G>A	p.Gly430Asp	p.G430D	ENST00000368508	NM_002944.2	430	gGc/gAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854560		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	48	279	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059183	27059183	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	36	245	0	ENST00000324856.7:c.1820C>A	p.Ser607Ter	p.S607*	ENST00000324856	NM_006015.4	607	tCa/tAa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256589	115256589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	55	258	2	ENST00000369535.4:c.122G>T	p.Arg41Ile	p.R41I	ENST00000369535	NM_002524.4	41	aGa/aTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521385	187521385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1426195084		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	43	361	0	ENST00000441802.2:c.11770C>T	p.Arg3924Cys	p.R3924C	ENST00000441802	NM_005245.3	3924	Cgc/Tgc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95592924	95592924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755944755		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	33	201	0	ENST00000343455.3:c.896C>T	p.Ser299Leu	p.S299L	ENST00000343455	NM_177438.2	299	tCg/tTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095644	178095644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763240080		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	33	254	0	ENST00000397062.3:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000397062	NM_006164.4	563	Gaa/Aaa																																																																														
CBL	867	MSKCC	GRCh37	11	119103196	119103196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	54	343	0	ENST00000264033.4:c.234G>T	p.Lys78Asn	p.K78N	ENST00000264033	NM_005188.3	78	aaG/aaT																																																																														
TOP1	7150	MSKCC	GRCh37	20	39708808	39708808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183058581		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	33	181	0	ENST00000361337.2:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000361337	NM_003286.2	140	cGa/cAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468381	89468381	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754102338		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	28	136	0	ENST00000336596.2:c.1915C>T	p.Arg639Cys	p.R639C	ENST00000336596	NM_005233.5	639	Cgc/Tgc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388201066		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	52	246	1	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188404	32188404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763926116		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	73	422	0	ENST00000375023.3:c.937G>A	p.Glu313Lys	p.E313K	ENST00000375023	NM_004557.3	313	Gaa/Aaa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115268950	115268950	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs750855257		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	39	371	0	ENST00000438362.2:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000438362	NM_001242891.1	554	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871249	35871249	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	32	302	0	ENST00000303115.3:c.471G>T	p.Lys157Asn	p.K157N	ENST00000303115	NM_002185.3	157	aaG/aaT																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990631	7990631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	82	440	0	ENST00000319144.4:c.130G>T	p.Asp44Tyr	p.D44Y	ENST00000319144	NM_001139.2	44	Gac/Tac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930564	32930564	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	21	193	0	ENST00000380152.3:c.7436-1G>T		p.X2479_splice	ENST00000380152		2479																																																																															
SESN3	143686	MSKCC	GRCh37	11	94917635	94917635	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	68	345	0	ENST00000536441.1:c.886G>T	p.Glu296Ter	p.E296*	ENST00000536441	NM_144665.3	296	Gaa/Taa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31472304	31472304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	35	368	0	ENST00000344624.3:c.2107C>A	p.Leu703Ile	p.L703I	ENST00000344624		703	Ctc/Atc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951934	178951934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	51	276	0	ENST00000263967.3:c.2989C>T	p.Leu997Phe	p.L997F	ENST00000263967	NM_006218.2	997	Ctc/Ttc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242718	16242718	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	55	392	0	ENST00000375759.3:c.1339A>C	p.Lys447Gln	p.K447Q	ENST00000375759	NM_015001.2	447	Aaa/Caa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193117000	193117000	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	34	202	0	ENST00000367435.3:c.733T>A	p.Phe245Ile	p.F245I	ENST00000367435	NM_024529.4	245	Ttt/Att																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375222	118375222	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	55	270	0	ENST00000534358.1:c.8615C>A	p.Ser2872Ter	p.S2872*	ENST00000534358	NM_005933.3	2872	tCa/tAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953649	32953649	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	32	259	0	ENST00000380152.3:c.8950T>G	p.Ser2984Ala	p.S2984A	ENST00000380152		2984	Tca/Gca																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504563	103504563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	30	230	0	ENST00000355739.4:c.184C>T	p.Leu62Phe	p.L62F	ENST00000355739	NM_000123.3	62	Ctc/Ttc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103513946	103513946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	33	234	0	ENST00000355739.4:c.762G>T	p.Met254Ile	p.M254I	ENST00000355739	NM_000123.3	254	atG/atT																																																																														
MGA	23269	MSKCC	GRCh37	15	42042352	42042352	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1034708867		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	49	431	1	ENST00000219905.7:c.6547A>G	p.Thr2183Ala	p.T2183A	ENST00000219905	NM_001164273.1	2183	Acc/Gcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3794909	3794909	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1305897515		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	44	311	0	ENST00000262367.5:c.3968A>C	p.Lys1323Thr	p.K1323T	ENST00000262367	NM_004380.2	1323	aAa/aCa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645195	67645195	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	86	543	0	ENST00000264010.4:c.460A>G	p.Ile154Val	p.I154V	ENST00000264010	NM_006565.3	154	Ata/Gta																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350510	89350510	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	72	487	0	ENST00000301030.4:c.2440T>G	p.Phe814Val	p.F814V	ENST00000301030	NM_001256183.1	814	Ttt/Gtt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89352467	89352467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	86	511	0	ENST00000301030.4:c.872C>T	p.Ser291Phe	p.S291F	ENST00000301030	NM_001256183.1	291	tCc/tTc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30320332	30320332	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	49	226	0	ENST00000322652.5:c.1273A>C	p.Lys425Gln	p.K425Q	ENST00000322652	NM_015355.2	425	Aaa/Caa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246494	41246494	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs80357472		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	68	445	0	ENST00000357654.3:c.1054G>T	p.Glu352Ter	p.E352*	ENST00000357654	NM_007294.3	352	Gaa/Taa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39240665	39240665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	38	258	0	ENST00000402219.2:c.2103C>A	p.Phe701Leu	p.F701L	ENST00000402219	NM_005633.3	701	ttC/ttA																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721151	61721151	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	46	343	0	ENST00000401558.2:c.1123C>A	p.His375Asn	p.H375N	ENST00000401558	NM_003400.3	375	Cat/Aat																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268799	41268799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	27	330	0	ENST00000349496.5:c.1037T>A	p.Val346Glu	p.V346E	ENST00000349496	NM_001904.3	346	gTg/gAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47155394	47155394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	62	310	0	ENST00000409792.3:c.4687G>A	p.Gly1563Ser	p.G1563S	ENST00000409792	NM_014159.6	1563	Ggc/Agc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163347	47163347	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	39	212	0	ENST00000409792.3:c.2779G>T	p.Glu927Ter	p.E927*	ENST00000409792	NM_014159.6	927	Gaa/Taa																																																																														
TET2	54790	MSKCC	GRCh37	4	106155539	106155539	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs779231977		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	42	260	0	ENST00000380013.4:c.440A>C	p.Lys147Thr	p.K147T	ENST00000380013	NM_001127208.2	147	aAg/aCg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003332	143003332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752612658		P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	67	351	0	ENST00000262992.4:c.2494C>T	p.Arg832Cys	p.R832C	ENST00000262992	NM_001101669.1	832	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542078	187542078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	46	284	0	ENST00000441802.2:c.5662C>A	p.Leu1888Ile	p.L1888I	ENST00000441802	NM_005245.3	1888	Ctt/Att																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31405827	31405827	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	20	158	0	ENST00000344624.3:c.3951T>G	p.Ile1317Met	p.I1317M	ENST00000344624		1317	atT/atG																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876208	35876208	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	50	357	0	ENST00000303115.3:c.1000G>T	p.Glu334Ter	p.E334*	ENST00000303115	NM_002185.3	334	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112111406	112111406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	23	188	0	ENST00000257430.4:c.503G>T	p.Arg168Ile	p.R168I	ENST00000257430	NM_000038.5	168	aGa/aTa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131944857	131944857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	11	147	0	ENST00000265335.6:c.2878G>T	p.Asp960Tyr	p.D960Y	ENST00000265335		960	Gac/Tac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670621	30670621	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	43	358	0	ENST00000376406.3:c.5899G>T	p.Glu1967Ter	p.E1967*	ENST00000376406	NM_014641.2	1967	Gaa/Taa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106534429	106534429	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	29	157	0	ENST00000369096.4:c.1A>G	p.Met1?	p.M1?	ENST00000369096	NM_001198.3	1	Atg/Gtg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555217	106555217	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	37	400	0	ENST00000369096.4:c.2334A>C	p.Arg778Ser	p.R778S	ENST00000369096	NM_001198.3	778	agA/agC																																																																														
ROS1	6098	MSKCC	GRCh37	6	117679070	117679070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	43	257	0	ENST00000368508.3:c.3751G>A	p.Val1251Ile	p.V1251I	ENST00000368508	NM_002944.2	1251	Gta/Ata																																																																														
NBN	4683	MSKCC	GRCh37	8	90983517	90983517	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	24	138	0	ENST00000265433.3:c.586T>A	p.Phe196Ile	p.F196I	ENST00000265433	NM_002485.4	196	Ttt/Att																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8523511	8523511	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	33	179	0	ENST00000356435.5:c.691+2T>C		p.X231_splice	ENST00000356435		231																																																																															
ABL1	25	MSKCC	GRCh37	9	133747542	133747542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	39	339	0	ENST00000318560.5:c.849C>A	p.Phe283Leu	p.F283L	ENST00000318560	NM_005157.4	283	ttC/ttA																																																																														
AR	367	MSKCC	GRCh37	X	66765865	66765865	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	120	703	0	ENST00000374690.3:c.877T>G	p.Ser293Ala	p.S293A	ENST00000374690	NM_000044.3	293	Tct/Gct																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205138	123205138	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	34	247	0	ENST00000218089.9:c.2498T>C	p.Val833Ala	p.V833A	ENST00000218089	NM_001042749.1	833	gTc/gCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	74	398	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057520008		P-0042310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	154	781	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508169	106508169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1381484125		P-0042310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	38	410	0	ENST00000359195.3:c.163G>A	p.Glu55Lys	p.E55K	ENST00000359195	NM_002649.2	55	Gaa/Aaa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429266	78429268	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-			P-0042310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	96	371	0	ENST00000370768.2:c.1174_1176del	p.Ile392del	p.I392del	ENST00000370768	NM_003902.3	392	ATA/-																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	202	768	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	247	437	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	127	496	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486037	8486037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	112	559	0	ENST00000356435.5:c.2780C>T	p.Ser927Leu	p.S927L	ENST00000356435		927	tCa/tTa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	154	569	3	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
EP300	2033	MSKCC	GRCh37	22	41572810	41572810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	186	646	1	ENST00000263253.7:c.5099del	p.Asn1700ThrfsTer9	p.N1700Tfs*9	ENST00000263253	NM_001429.3	1699	Aaa/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	128	470	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	226	923	6	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																														
POLE	5426	MSKCC	GRCh37	12	133220476	133220476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372901803		P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	181	610	0	ENST00000320574.5:c.4237G>A	p.Glu1413Lys	p.E1413K	ENST00000320574	NM_006231.2	1413	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	231	755	0	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935322	36935323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs747437399		P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	191	834	1	ENST00000361632.4:c.1404dup	p.Ser469GlnfsTer5	p.S469Qfs*5	ENST00000361632		468	-/C																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	258	887	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	401960	401960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200109736		P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	86	326	0	ENST00000399788.2:c.4831G>A	p.Ala1611Thr	p.A1611T	ENST00000399788	NM_001042603.1	1611	Gca/Aca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107086	27107086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	152	421	1	ENST00000324856.7:c.6697C>T	p.Arg2233Trp	p.R2233W	ENST00000324856	NM_006015.4	2233	Cgg/Tgg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225400324	225400324	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	45	179	0	ENST00000264414.4:c.299A>G	p.Asn100Ser	p.N100S	ENST00000264414	NM_003590.4	100	aAc/aGc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784122	9784124	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	87	591	0	ENST00000377346.4:c.2693_2695del	p.Asn898del	p.N898del	ENST00000377346	NM_005026.3	897	gACAac/gac																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170821	99170821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	108	576	0	ENST00000074304.5:c.1450T>C	p.Ser484Pro	p.S484P	ENST00000074304	NM_001134224.1	484	Tcc/Ccc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589260	67589261	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	81	233	0	ENST00000274335.5:c.1250dup	p.Asn417LysfsTer25	p.N417Kfs*25	ENST00000274335		416	-/A																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591115	67591116	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTA			P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	85	268	0	ENST00000274335.5:c.1710_1712dup	p.Ile571dup	p.I571dup	ENST00000274335		571	ctt/cTTAtt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187253	38187254	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	174	623	0	ENST00000317025.8:c.1223dup	p.Ser409GlufsTer9	p.S409Efs*9	ENST00000317025	NM_023034.1	408	aag/aaAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	170	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0042512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	100	668	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0042512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	353	566	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
CD274	29126	MSKCC	GRCh37	9	5462929	5462929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146495642		P-0042512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	138	318	0	ENST00000381577.3:c.490G>A	p.Glu164Lys	p.E164K	ENST00000381577	NM_014143.3	164	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175758	112175759	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATTTTGC			P-0042512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	77	317	0	ENST00000257430.4:c.4470_4477dup	p.Thr1493IlefsTer17	p.T1493Ifs*17	ENST00000257430	NM_000038.5	1489	-/CATTTTGC																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0042588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	126	331	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440870	52440870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	271	927	0	ENST00000460680.1:c.634G>T	p.Glu212Ter	p.E212*	ENST00000460680	NM_004656.3	212	Gag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0042588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	95	543	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149447884	149447884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs538359948		P-0042588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	252	954	1	ENST00000286301.3:c.1520C>T	p.Thr507Met	p.T507M	ENST00000286301	NM_005211.3	507	aCg/aTg																																																																														
PARK2	0	MSKCC	GRCh37	6	162622198	162622198	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	126	534	0	ENST00000366898.1:c.499A>C	p.Ser167Arg	p.S167R	ENST00000366898	NM_004562.2	167	Agc/Cgc																																																																														
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs530419081		P-0042656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	54	304	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0042656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	427	220	0	ENST00000329236.7:c.1459+1G>A		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																															
TP53	7157	MSKCC	GRCh37	17	7577567	7577568	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0042656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	346	327	0	ENST00000269305.4:c.713_714del	p.Cys238Ter	p.C238*	ENST00000269305	NM_001126112.2	238	tGT/t																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7983992	7983992	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769882996		P-0042656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	166	212	0	ENST00000319144.4:c.634G>A	p.Val212Ile	p.V212I	ENST00000319144	NM_001139.2	212	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112174595	112174596	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0042656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	192	138	0	ENST00000257430.4:c.3305dup	p.Tyr1102Ter	p.Y1102*	ENST00000257430	NM_000038.5	1102	tac/tAac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	116	328	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	136	563	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	16	108	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	163	761	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1293661	1293661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	108	642	0	ENST00000310581.5:c.1340G>A	p.Arg447His	p.R447H	ENST00000310581	NM_198253.2	447	cGc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884563	151884563	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	53	267	0	ENST00000262189.6:c.4794-2A>T		p.X1598_splice	ENST00000262189	NM_170606.2	1598																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584557	48584563	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCAGC	CCTCAGC	-			P-0042665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	102	372	0	ENST00000342988.3:c.731_737del	p.Pro244GlnfsTer90	p.P244Qfs*90	ENST00000342988	NM_005359.5	244	CCTCAGCca/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0042681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	175	1001	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519971		P-0042681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	54	483	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112175861	112175862	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0042681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	14	223	0	ENST00000257430.4:c.4571_4572del	p.Ile1524AsnfsTer8	p.I1524Nfs*8	ENST00000257430	NM_000038.5	1524	ATa/a																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509338	149509349	+	inframe_deletion	In_Frame_Del	DEL	CCTCCTGCGTGT	CCTCCTGCGTGT	-			P-0042681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	46	563	0	ENST00000261799.4:c.1550_1561del	p.Asp517_Glu520del	p.D517_E520del	ENST00000261799	NM_002609.3	517	gACACGCAGGAGGtc/gtc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	22	290	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764400127		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	54	357	0	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519943		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	60	485	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
MPL	4352	MSKCC	GRCh37	1	43803818	43803818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147938568		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	56	618	0	ENST00000372470.3:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000372470	NM_005373.2	43	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	88	371	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48919244	48919244	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913296		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	27	149	0	ENST00000267163.4:c.409G>T	p.Glu137Ter	p.E137*	ENST00000267163	NM_000321.2	137	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	57	333	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
INSR	3643	MSKCC	GRCh37	19	7152900	7152900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	70	436	0	ENST00000302850.5:c.2068G>A	p.Glu690Lys	p.E690K	ENST00000302850	NM_000208.2	690	Gag/Aag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515141	103515141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770246574		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	29	270	0	ENST00000355739.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000355739	NM_000123.3	548	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685309	89685309	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	51	248	0	ENST00000371953.3:c.204C>G	p.Tyr68Ter	p.Y68*	ENST00000371953	NM_000314.4	68	taC/taG																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622457	28622457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751562024		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	38	516	0	ENST00000241453.7:c.1160G>A	p.Arg387Gln	p.R387Q	ENST00000241453	NM_004119.2	387	cGa/cAa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs63751411		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	46	301	1	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	76	244	1	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108205711	108205711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	49	303	0	ENST00000278616.4:c.8026G>T	p.Glu2676Ter	p.E2676*	ENST00000278616	NM_000051.3	2676	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48937076	48937076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	54	259	0	ENST00000267163.4:c.844G>T	p.Glu282Ter	p.E282*	ENST00000267163	NM_000321.2	282	Gaa/Taa																																																																														
MED12	9968	MSKCC	GRCh37	X	70344077	70344077	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	94	727	0	ENST00000374080.3:c.1813C>T	p.Arg605Ter	p.R605*	ENST00000374080		605	Cga/Tga																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	94	528	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005419	29005419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55687105		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	30	309	0	ENST00000282397.4:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000282397	NM_002019.4	281	cGa/cAa																																																																														
FYN	2534	MSKCC	GRCh37	6	112024169	112024169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1465963577		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	32	373	0	ENST00000368678.4:c.616C>T	p.Arg206Cys	p.R206C	ENST00000368678		206	Cgc/Tgc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225379426	225379426	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	56	550	0	ENST00000264414.4:c.442C>T	p.Arg148Ter	p.R148*	ENST00000264414	NM_003590.4	148	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830958	72830958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1393698686		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	56	416	1	ENST00000268489.5:c.5623G>A	p.Glu1875Lys	p.E1875K	ENST00000268489	NM_006885.3	1875	Gaa/Aaa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201966	102201966	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	34	176	1	ENST00000263464.3:c.1318G>T	p.Glu440Ter	p.E440*	ENST00000263464	NM_001165.4	440	Gaa/Taa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850948	63850948	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	64	426	1	ENST00000279873.7:c.1726G>T	p.Glu576Ter	p.E576*	ENST00000279873	NM_032199.2	576	Gaa/Taa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81902830	81902830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766422892		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	51	431	0	ENST00000359376.3:c.491G>A	p.Arg164Gln	p.R164Q	ENST00000359376	NM_002661.3	164	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692811	89692811	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	70	225	0	ENST00000371953.3:c.295G>T	p.Glu99Ter	p.E99*	ENST00000371953	NM_000314.4	99	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519927		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	88	476	0	ENST00000263967.3:c.1625A>G	p.Glu542Gly	p.E542G	ENST00000263967	NM_006218.2	542	gAa/gGa																																																																														
ATM	472	MSKCC	GRCh37	11	108190753	108190753	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587780635		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	84	333	0	ENST00000278616.4:c.6420C>A	p.Phe2140Leu	p.F2140L	ENST00000278616	NM_000051.3	2140	ttC/ttA																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984022	2984022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753614569		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	61	502	0	ENST00000396946.4:c.508C>T	p.Arg170Cys	p.R170C	ENST00000396946	NM_032415.4	170	Cgc/Tgc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163317623	163317623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747173543		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	46	361	0	ENST00000271452.3:c.1019C>T	p.Ser340Leu	p.S340L	ENST00000271452	NM_145697.2	340	tCg/tTg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127414	55127414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1060501504		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	79	525	0	ENST00000257290.5:c.202G>A	p.Asp68Asn	p.D68N	ENST00000257290	NM_006206.4	68	Gat/Aat																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59793411	59793411	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375082407		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	70	349	0	ENST00000259008.2:c.2393G>A	p.Arg798Gln	p.R798Q	ENST00000259008	NM_032043.2	798	cGa/cAa																																																																														
CDK4	1019	MSKCC	GRCh37	12	58144442	58144442	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373619077		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	29	260	0	ENST00000257904.6:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000257904	NM_000075.3	210	cGa/cAa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185183551	185183551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	39	282	0	ENST00000265026.3:c.1405C>T	p.Arg469Cys	p.R469C	ENST00000265026	NM_004721.4	469	Cgt/Tgt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45871986	45871986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs748842373		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	72	477	0	ENST00000391945.4:c.262C>T	p.Arg88Ter	p.R88*	ENST00000391945	NM_000400.3	88	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836804	151836804	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	83	419	0	ENST00000262189.6:c.14416C>T	p.Arg4806Ter	p.R4806*	ENST00000262189	NM_170606.2	4806	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76938788	76938788	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	73	573	0	ENST00000373344.5:c.1960C>T	p.Arg654Ter	p.R654*	ENST00000373344	NM_000489.3	654	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434426	110434426	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs149826392		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	57	477	1	ENST00000375856.3:c.3975C>A	p.Phe1325Leu	p.F1325L	ENST00000375856	NM_003749.2	1325	ttC/ttA																																																																														
ATM	472	MSKCC	GRCh37	11	108115595	108115595	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs769166447		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	53	393	0	ENST00000278616.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000278616	NM_000051.3	248	cGa/cTa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374318	31374318	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200236170		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	33	460	0	ENST00000328111.2:c.317G>A	p.Arg106Gln	p.R106Q	ENST00000328111	NM_006892.3	106	cGa/cAa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026133	71026133	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs775136381		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	73	343	0	ENST00000318789.4:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000318789	NM_032682.5	497	Cga/Tga																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431649	6431649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	80	473	0	ENST00000356142.4:c.202C>T	p.Arg68Cys	p.R68C	ENST00000356142	NM_018890.3	68	Cgc/Tgc																																																																														
SMO	6608	MSKCC	GRCh37	7	128850885	128850885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61740964		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	82	571	1	ENST00000249373.3:c.1732G>A	p.Glu578Lys	p.E578K	ENST00000249373	NM_005631.4	578	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295755	212295755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	90	483	0	ENST00000342788.4:c.2558C>A	p.Ser853Tyr	p.S853Y	ENST00000342788	NM_005235.2	853	tCt/tAt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112388	115112388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs565848855		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	27	175	0	ENST00000257566.3:c.1352C>T	p.Ala451Val	p.A451V	ENST00000257566	NM_016569.3	451	gCg/gTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31410988	31410988	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1295265844		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	108	501	1	ENST00000344624.3:c.3532C>T	p.Arg1178Ter	p.R1178*	ENST00000344624		1178	Cga/Tga																																																																														
SESN3	143686	MSKCC	GRCh37	11	94910992	94910992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	105	533	1	ENST00000536441.1:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000536441	NM_144665.3	380	Cgg/Tgg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39241093	39241093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	90	454	2	ENST00000402219.2:c.1978C>T	p.Arg660Cys	p.R660C	ENST00000402219	NM_005633.3	660	Cgc/Tgc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169036	32169036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745902446		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	91	710	1	ENST00000375023.3:c.3997C>T	p.Arg1333Cys	p.R1333C	ENST00000375023	NM_004557.3	1333	Cgt/Tgt																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145001	58145001	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772938517		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	43	424	0	ENST00000257904.6:c.343G>A	p.Glu115Lys	p.E115K	ENST00000257904	NM_000075.3	115	Gaa/Aaa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56381317	56381317	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	32	180	0	ENST00000348428.3:c.961G>T	p.Glu321Ter	p.E321*	ENST00000348428	NM_006785.3	321	Gaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484287	8484287	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	67	380	0	ENST00000356435.5:c.3245C>A	p.Ser1082Ter	p.S1082*	ENST00000356435		1082	tCa/tAa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914722	39914722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	80	460	1	ENST00000378444.4:c.4640G>T	p.Arg1547Leu	p.R1547L	ENST00000378444	NM_001123385.1	1547	cGa/cTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704605	117704605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	56	321	1	ENST00000368508.3:c.2371G>T	p.Asp791Tyr	p.D791Y	ENST00000368508	NM_002944.2	791	Gac/Tac																																																																														
ATRX	546	MSKCC	GRCh37	X	76889176	76889176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	49	334	0	ENST00000373344.5:c.4834C>A	p.Leu1612Ile	p.L1612I	ENST00000373344	NM_000489.3	1612	Ctt/Att																																																																														
MRE11A	0	MSKCC	GRCh37	11	94170355	94170355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	60	293	0	ENST00000323929.3:c.1914G>T	p.Lys638Asn	p.K638N	ENST00000323929	NM_005591.3	638	aaG/aaT																																																																														
AKT3	10000	MSKCC	GRCh37	1	243727052	243727052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	57	390	0	ENST00000263826.5:c.918C>A	p.Phe306Leu	p.F306L	ENST00000263826	NM_005465.4	306	ttC/ttA																																																																														
AKT3	10000	MSKCC	GRCh37	1	243858940	243858940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	64	417	0	ENST00000263826.5:c.125C>T	p.Pro42Leu	p.P42L	ENST00000263826	NM_005465.4	42	cCt/cTt																																																																														
TET1	80312	MSKCC	GRCh37	10	70332927	70332927	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	70	579	0	ENST00000373644.4:c.832G>T	p.Glu278Ter	p.E278*	ENST00000373644	NM_030625.2	278	Gaa/Taa																																																																														
PGR	5241	MSKCC	GRCh37	11	100933223	100933223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1175582391		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	111	388	0	ENST00000325455.5:c.2167G>A	p.Glu723Lys	p.E723K	ENST00000325455	NM_001202474.3	723	Gag/Aag																																																																														
PGR	5241	MSKCC	GRCh37	11	100996807	100996831	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCATCCCCACAGATTAAACAAAT	CTTCATCCCCACAGATTAAACAAAT	-			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	74	448	0	ENST00000325455.5:c.1696_1720del	p.Ile566HisfsTer75	p.I566Hfs*75	ENST00000325455	NM_001202474.3	566	ATTTGTTTAATCTGTGGGGATGAAGca/ca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344075	118344075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	49	310	0	ENST00000534358.1:c.2201G>T	p.Arg734Ile	p.R734I	ENST00000534358	NM_005933.3	734	aGa/aTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344743	118344743	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	42	324	0	ENST00000534358.1:c.2869A>C	p.Lys957Gln	p.K957Q	ENST00000534358	NM_005933.3	957	Aaa/Caa																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811624	102811624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	88	470	1	ENST00000307046.8:c.560C>T	p.Ala187Val	p.A187V	ENST00000307046	NM_001111285.1	187	gCt/gTt																																																																														
MGA	23269	MSKCC	GRCh37	15	41999935	41999935	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	82	431	0	ENST00000219905.7:c.2198A>C	p.Lys733Thr	p.K733T	ENST00000219905	NM_001164273.1	733	aAa/aCa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50830414	50830414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	42	382	0	ENST00000398568.2:c.2857A>G	p.Lys953Glu	p.K953E	ENST00000398568	NM_001042412.1	953	Aaa/Gaa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819699	81819699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	64	489	1	ENST00000359376.3:c.105G>T	p.Lys35Asn	p.K35N	ENST00000359376	NM_002661.3	35	aaG/aaT																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627504	37627504	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	61	501	0	ENST00000447079.4:c.1419A>C	p.Lys473Asn	p.K473N	ENST00000447079	NM_015083.1	473	aaA/aaC																																																																														
EZH1	2145	MSKCC	GRCh37	17	40865301	40865301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	85	539	0	ENST00000428826.2:c.1130C>T	p.Ala377Val	p.A377V	ENST00000428826		377	gCc/gTc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018249	48018249	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	82	411	0	ENST00000234420.5:c.444A>C	p.Leu148Phe	p.L148F	ENST00000234420	NM_000179.2	148	ttA/ttC																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735366	204735366	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	37	241	0	ENST00000302823.3:c.167T>G	p.Phe56Cys	p.F56C	ENST00000302823	NM_005214.4	56	tTt/tGt																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205176	128205176	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	75	528	0	ENST00000341105.2:c.265T>G	p.Leu89Val	p.L89V	ENST00000341105	NM_032638.4	89	Ttg/Gtg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968334	134968334	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	25	429	0	ENST00000398015.3:c.2846+1G>T		p.X949_splice	ENST00000398015	NM_004441.4	949																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143191816	143191816	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	52	314	0	ENST00000262992.4:c.615G>T	p.Lys205Asn	p.K205N	ENST00000262992	NM_001101669.1	205	aaG/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629221	187629221	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	73	469	0	ENST00000441802.2:c.1761A>C	p.Gln587His	p.Q587H	ENST00000441802	NM_005245.3	587	caA/caC																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522808	67522808	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368742778		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	46	259	0	ENST00000274335.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000274335		102	tCg/tTg																																																																														
SESN1	27244	MSKCC	GRCh37	6	109322566	109322566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	79	569	0	ENST00000436639.2:c.471C>A	p.Phe157Leu	p.F157L	ENST00000436639	NM_014454.2	157	ttC/ttA																																																																														
FYN	2534	MSKCC	GRCh37	6	112035566	112035566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	48	319	0	ENST00000368678.4:c.328C>A	p.Gln110Lys	p.Q110K	ENST00000368678		110	Caa/Aaa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138201358	138201358	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	76	398	0	ENST00000237289.4:c.2057T>G	p.Phe686Cys	p.F686C	ENST00000237289	NM_001270507.1	686	tTt/tGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55229272	55229272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768627073		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	79	506	0	ENST00000275493.2:c.1579C>T	p.Arg527Trp	p.R527W	ENST00000275493	NM_005228.3	527	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874466	151874466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753744599		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	58	360	0	ENST00000262189.6:c.8072C>T	p.Ser2691Phe	p.S2691F	ENST00000262189	NM_170606.2	2691	tCt/tTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965439	68965439	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	119	655	0	ENST00000288368.4:c.1051G>T	p.Glu351Ter	p.E351*	ENST00000288368	NM_024870.2	351	Gaa/Taa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980587	70980587	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs761251088		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	81	601	0	ENST00000276594.2:c.790C>A	p.Pro264Thr	p.P264T	ENST00000276594	NM_024504.3	264	Cca/Aca																																																																														
BTK	695	MSKCC	GRCh37	X	100629595	100629595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	73	456	0	ENST00000308731.7:c.169G>T	p.Asp57Tyr	p.D57Y	ENST00000308731	NM_000061.2	57	Gat/Tat																																																																														
XIAP	331	MSKCC	GRCh37	X	123020293	123020293	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1484649473		P-0042702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	67	473	0	ENST00000355640.3:c.781T>C	p.Ser261Pro	p.S261P	ENST00000355640		261	Tcc/Ccc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	86	491	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1192416464		P-0042715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	75	874	0	ENST00000269305.4:c.80del	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123263350	123263350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	58	611	0	ENST00000358487.5:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000358487	NM_000141.4	465	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288967	212288967	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs537458255		P-0042803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	39	459	0	ENST00000342788.4:c.2779C>T	p.Arg927Ter	p.R927*	ENST00000342788	NM_005235.2	927	Cga/Tga																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482870	67482870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	78	534	0	ENST00000327367.4:c.1274C>T	p.Ser425Phe	p.S425F	ENST00000327367	NM_005902.3	425	tCt/tTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	124	993	1	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27058075	27058075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	139	478	0	ENST00000324856.7:c.1783C>T	p.Gln595Ter	p.Q595*	ENST00000324856	NM_006015.4	595	Cag/Tag																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38591737	38591738	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0042803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	74	450	0	ENST00000299084.4:c.196_197del	p.Arg66GlyfsTer11	p.R66Gfs*11	ENST00000299084	NM_152594.2	66	AGg/g																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721360	176721360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772981865		P-0042803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	69	587	0	ENST00000439151.2:c.6991G>A	p.Asp2331Asn	p.D2331N	ENST00000439151	NM_022455.4	2331	Gac/Aac																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	98	495	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	108	583	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	58	304	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	33	480	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	45	386	2	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	102	368	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	256	922	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	90	402	4	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	166	558	5	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	233	842	0	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																														
AXL	558	MSKCC	GRCh37	19	41743896	41743896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	252	933	0	ENST00000301178.4:c.836del	p.Pro279GlnfsTer18	p.P279Qfs*18	ENST00000301178	NM_021913.4	277	gaC/ga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89337296	89337296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	55	647	1	ENST00000301030.4:c.7735C>T	p.Arg2579Cys	p.R2579C	ENST00000301030	NM_001256183.1	2579	Cgc/Tgc																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	47	471	4	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453124	140453124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	31	431	1	ENST00000288602.6:c.1811G>T	p.Trp604Leu	p.W604L	ENST00000288602	NM_004333.4	604	tGg/tTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759697	133759697	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776289598		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	98	730	0	ENST00000318560.5:c.2020C>T	p.Arg674Trp	p.R674W	ENST00000318560	NM_005157.4	674	Cgg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52598124	52598124	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	46	571	0	ENST00000394830.3:c.3742G>T	p.Gly1248Ter	p.G1248*	ENST00000394830	NM_018313.4	1248	Gga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	380	896	5	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380350	14380350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	149	366	1	ENST00000256196.4:c.67G>T	p.Gly23Cys	p.G23C	ENST00000256196		23	Ggc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49441816	49441816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	81	724	1	ENST00000301067.7:c.4168del	p.Ala1390GlnfsTer27	p.A1390Qfs*27	ENST00000301067	NM_003482.3	1390	Gca/ca																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345760	152345760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	79	268	0	ENST00000359321.1:c.810del	p.Phe270LeufsTer27	p.F270Lfs*27	ENST00000359321	NM_005431.1	270	ttT/tt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302825	15302825	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776600631		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	270	1011	2	ENST00000263388.2:c.625G>A	p.Gly209Arg	p.G209R	ENST00000263388	NM_000435.2	209	Ggg/Agg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760702	133760702	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	306	1028	3	ENST00000318560.5:c.3025C>T	p.Arg1009Ter	p.R1009*	ENST00000318560	NM_005157.4	1009	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120094	70120094	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	19	61	0	ENST00000245479.2:c.1100del	p.Pro367HisfsTer16	p.P367Hfs*16	ENST00000245479	NM_000346.3	366	Ccc/cc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360920	118360920	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	63	512	0	ENST00000534358.1:c.4652A>G	p.His1551Arg	p.H1551R	ENST00000534358	NM_005933.3	1551	cAt/cGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420578	49420578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	245	764	1	ENST00000301067.7:c.15171G>T	p.Trp5057Cys	p.W5057C	ENST00000301067	NM_003482.3	5057	tgG/tgT																																																																														
SETD8	0	MSKCC	GRCh37	12	123875278	123875278	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	25	245	0	ENST00000330479.4:c.234T>G	p.His78Gln	p.H78Q	ENST00000330479	NM_020382.3	78	caT/caG																																																																														
LATS2	26524	MSKCC	GRCh37	13	21555763	21555763	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	227	785	0	ENST00000382592.4:c.2507T>C	p.Met836Thr	p.M836T	ENST00000382592	NM_014572.2	836	aTg/aCg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223265	2223265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	262	865	0	ENST00000326181.6:c.877C>T	p.Gln293Ter	p.Q293*	ENST00000326181	NM_032271.2	293	Cag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660618	67660618	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	85	593	0	ENST00000264010.4:c.1518G>T	p.Gln506His	p.Q506H	ENST00000264010	NM_006565.3	506	caG/caT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610250	10610250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	271	1000	1	ENST00000171111.5:c.460C>T	p.His154Tyr	p.H154Y	ENST00000171111	NM_203500.1	154	Cac/Tac																																																																														
TET2	54790	MSKCC	GRCh37	4	106197645	106197645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs974556421		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	83	317	0	ENST00000380013.4:c.5978G>A	p.Arg1993Gln	p.R1993Q	ENST00000380013	NM_001127208.2	1993	cGg/cAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38966817	38966817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771866090		P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	26	280	0	ENST00000357387.3:c.1225G>A	p.Val409Ile	p.V409I	ENST00000357387	NM_152756.3	409	Gtt/Att																																																																														
RAD50	10111	MSKCC	GRCh37	5	131940562	131940562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	108	343	0	ENST00000265335.6:c.2593del	p.Ser865ValfsTer6	p.S865Vfs*6	ENST00000265335		863	ctA/ct																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032221	26032221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	71	308	0	ENST00000244661.2:c.68C>T	p.Thr23Ile	p.T23I	ENST00000244661	NM_003537.3	23	aCc/aTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528422	157528422	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	170	704	0	ENST00000346085.5:c.6148del	p.Asp2050MetfsTer49	p.D2050Mfs*49	ENST00000346085	NM_020732.3	2049	ttG/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	554	942	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	225	450	0				ENST00000310581	NM_198253.2																																																																																
MYCN	4613	MSKCC	GRCh37	2	16085972	16085972	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs998174759		P-0042825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	190	751	1	ENST00000281043.3:c.1148G>A	p.Arg383His	p.R383H	ENST00000281043	NM_005378.4	383	cGc/cAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48955394	48955394	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886043247		P-0042825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	312	181	0	ENST00000267163.4:c.1510C>T	p.Gln504Ter	p.Q504*	ENST00000267163	NM_000321.2	504	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	48942673	48942673	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs764547244		P-0042825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	351	255	0	ENST00000267163.4:c.1060C>T	p.Gln354Ter	p.Q354*	ENST00000267163	NM_000321.2	354	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519987		P-0042825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	1317	758	0	ENST00000269305.4:c.810T>G	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttG																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872189	45872189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0042825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	591	780	0	ENST00000391945.4:c.245A>G	p.Lys82Arg	p.K82R	ENST00000391945	NM_000400.3	82	aAg/aGg																																																																														
CIC	23152	MSKCC	GRCh37	19	42793510	42793510	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1394050113		P-0042825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	209	1017	1	ENST00000575354.2:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000575354	NM_015125.3	438	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105524	27105524	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0042825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	342	445	0	ENST00000324856.7:c.5135T>A	p.Leu1712Ter	p.L1712*	ENST00000324856	NM_006015.4	1712	tTg/tAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468426	120468426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	331	644	0	ENST00000256646.2:c.4013C>G	p.Ser1338Cys	p.S1338C	ENST00000256646	NM_024408.3	1338	tCc/tGc																																																																														
PARP1	142	MSKCC	GRCh37	1	226567716	226567716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781134011		P-0042825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	185	686	0	ENST00000366794.5:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000366794	NM_001618.3	484	Gag/Aag																																																																														
BLM	641	MSKCC	GRCh37	15	91334070	91334070	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	198	355	1	ENST00000355112.3:c.3015A>G	p.Ile1005Met	p.I1005M	ENST00000355112	NM_000057.2	1005	atA/atG																																																																														
NUP93	9688	MSKCC	GRCh37	16	56855500	56855500	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	95	431	0	ENST00000308159.5:c.649G>C	p.Asp217His	p.D217H	ENST00000308159	NM_014669.4	217	Gat/Cat																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129474	152129474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	75	312	0	ENST00000206249.3:c.427G>A	p.Glu143Lys	p.E143K	ENST00000206249	NM_000125.3	143	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	15	499	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CBL	867	MSKCC	GRCh37	11	119142540	119142540	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730880431		P-0042995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	118	418	1	ENST00000264033.4:c.539G>A	p.Arg180Gln	p.R180Q	ENST00000264033	NM_005188.3	180	cGg/cAg																																																																														
CDH1	999	MSKCC	GRCh37	16	68849637	68849637	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	250	553	0	ENST00000261769.5:c.1540G>C	p.Asp514His	p.D514H	ENST00000261769	NM_004360.3	514	Gac/Cac																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118315	17118316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGGCAGACGAGGCACTGG			P-0042995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	211	542	0	ENST00000285071.4:c.1503_1521dup	p.Lys508ProfsTer19	p.K508Pfs*19	ENST00000285071	NM_144997.5	507	-/CCAGTGCCTCGTCTGCCTC																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082360	16082361	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	304	647	0	ENST00000281043.3:c.179dup	p.Leu61AlafsTer24	p.L61Afs*24	ENST00000281043	NM_005378.4	58	-/C																																																																														
SDHA	6389	MSKCC	GRCh37	5	233747	233747	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	302	589	0	ENST00000264932.6:c.1051A>G	p.Ile351Val	p.I351V	ENST00000264932	NM_004168.2	351	Atc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	126	380	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860121	152860121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs782206940		P-0043039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	180	698	3	ENST00000406277.2:c.307G>A	p.Gly103Ser	p.G103S	ENST00000406277	NM_152274.4	103	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579462	7579462	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	255	719	0	ENST00000269305.4:c.225del	p.Ala76HisfsTer47	p.A76Hfs*47	ENST00000269305	NM_001126112.2	75	ccT/cc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098937	178098938	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAA			P-0043039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	96	318	0	ENST00000397062.3:c.107_108insTTT	p.Val36_Phe37insLeu	p.V36_F37insL	ENST00000397062	NM_006164.4	36	gta/gtTTTa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	174	565	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	466	774	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246137	46246137	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	87	330	0	ENST00000334344.6:c.4231C>T	p.Gln1411Ter	p.Q1411*	ENST00000334344	NM_152641.2	1411	Caa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759658584		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	70	293	1	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509768	187509768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766893768		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	93	327	0	ENST00000441802.2:c.13745C>T	p.Ser4582Phe	p.S4582F	ENST00000441802	NM_005245.3	4582	tCc/tTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55564602	55564602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	193	698	0	ENST00000288135.5:c.490C>T	p.Pro164Ser	p.P164S	ENST00000288135	NM_000222.2	164	Cct/Tct																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201802	102201802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	113	303	0	ENST00000263464.3:c.1154C>T	p.Ala385Val	p.A385V	ENST00000263464	NM_001165.4	385	gCc/gTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	139	566	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792611	33792611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	22	24	0	ENST00000498907.2:c.710C>T	p.Pro237Leu	p.P237L	ENST00000498907	NM_004364.3	237	cCc/cTc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625303	69625303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	318	971	0	ENST00000334134.2:c.490C>T	p.Arg164Cys	p.R164C	ENST00000334134	NM_005247.2	164	Cgc/Tgc																																																																														
ATR	545	MSKCC	GRCh37	3	142254994	142254994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	32	162	0	ENST00000350721.4:c.3775C>T	p.Pro1259Ser	p.P1259S	ENST00000350721	NM_001184.3	1259	Cca/Tca																																																																														
EZH1	2145	MSKCC	GRCh37	17	40858195	40858195	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777686988		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	475	706	0	ENST00000428826.2:c.1669C>T	p.Arg557Cys	p.R557C	ENST00000428826		557	Cgt/Tgt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2978414	2978414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	330	943	0	ENST00000396946.4:c.916G>A	p.Glu306Lys	p.E306K	ENST00000396946	NM_032415.4	306	Gaa/Aaa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42852443	42852443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139092674		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	272	706	0	ENST00000398585.3:c.643G>A	p.Glu215Lys	p.E215K	ENST00000398585	NM_001135099.1	215	Gag/Aag																																																																														
NUP93	9688	MSKCC	GRCh37	16	56872935	56872935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	84	309	0	ENST00000308159.5:c.2090C>T	p.Thr697Ile	p.T697I	ENST00000308159	NM_014669.4	697	aCc/aTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	171	479	0				ENST00000310581	NM_198253.2																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56488219	56488219	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs371577741		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	192	611	1	ENST00000267101.3:c.1738C>T	p.Arg580Ter	p.R580*	ENST00000267101	NM_001982.3	580	Cga/Tga																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641097	3641097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	293	1081	0	ENST00000294008.3:c.2542G>A	p.Glu848Lys	p.E848K	ENST00000294008	NM_032444.2	848	Gaa/Aaa																																																																														
NUF2	83540	MSKCC	GRCh37	1	163295950	163295950	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	79	455	0	ENST00000271452.3:c.109T>C	p.Tyr37His	p.Y37H	ENST00000271452	NM_145697.2	37	Tat/Cat																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246027136	246027136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	151	601	1	ENST00000388985.4:c.866C>T	p.Ser289Phe	p.S289F	ENST00000388985		289	tCc/tTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647848	3647848	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1175196086		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	341	1021	0	ENST00000294008.3:c.1316C>T	p.Pro439Leu	p.P439L	ENST00000294008	NM_032444.2	439	cCa/cTa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658559	3658559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	259	879	0	ENST00000294008.3:c.407C>T	p.Ser136Phe	p.S136F	ENST00000294008	NM_032444.2	136	tCt/tTt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348007	89348007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776941348		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	302	1177	0	ENST00000301030.4:c.4943C>T	p.Pro1648Leu	p.P1648L	ENST00000301030	NM_001256183.1	1648	cCa/cTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302408	15302408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	355	1092	0	ENST00000263388.2:c.863G>A	p.Gly288Glu	p.G288E	ENST00000263388	NM_000435.2	288	gGg/gAg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972722	25972722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	141	525	0	ENST00000435504.4:c.1703G>A	p.Arg568Lys	p.R568K	ENST00000435504		568	aGg/aAg																																																																														
CRKL	1399	MSKCC	GRCh37	22	21272230	21272230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1463139007		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	107	406	0	ENST00000354336.3:c.8C>T	p.Ser3Phe	p.S3F	ENST00000354336	NM_005207.3	3	tCc/tTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47059193	47059193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772135964		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	173	550	0	ENST00000409792.3:c.7468C>T	p.Arg2490Trp	p.R2490W	ENST00000409792	NM_014159.6	2490	Cgg/Tgg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902806	1902806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	173	698	0	ENST00000382891.5:c.425C>T	p.Ser142Phe	p.S142F	ENST00000382891	NM_133335.3	142	tCc/tTc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168668	56168668	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774985330		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	25	420	0	ENST00000399503.3:c.1522C>T	p.Pro508Ser	p.P508S	ENST00000399503	NM_005921.1	508	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112128144	112128144	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs76685252		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	70	287	0	ENST00000257430.4:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000257430	NM_000038.5	216	cGa/cAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27185627	27185627	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs748662110		P-0043072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	199	562	1	ENST00000380036.4:c.1327G>A	p.Val443Ile	p.V443I	ENST00000380036	NM_000459.3	443	Gtt/Att																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	9	191	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	25	89	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639590	47639590	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	22	135	0	ENST00000233146.2:c.683A>C	p.Lys228Thr	p.K228T	ENST00000233146	NM_000251.2	228	aAa/aCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	131	377	9				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934571		P-0043121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			140	271	693	1	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918622	44918622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			63	237	304	0	ENST00000377967.4:c.1105C>T	p.Gln369Ter	p.Q369*	ENST00000377967	NM_021140.2	369	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628266	187628266	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	270	707	2	ENST00000441802.2:c.2716C>T	p.Gln906Ter	p.Q906*	ENST00000441802	NM_005245.3	906	Cag/Tag																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223356	2223356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1376643409		P-0043121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	266	760	1	ENST00000326181.6:c.968C>T	p.Ser323Leu	p.S323L	ENST00000326181	NM_032271.2	323	tCg/tTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3799626	3799626	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0043121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	238	484	0	ENST00000262367.5:c.3836+2T>G		p.X1279_splice	ENST00000262367	NM_004380.2	1279																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981763	201981779	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGACCAGGGCAGCC	CCCAGACCAGGGCAGCC	-			P-0043121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	263	674	0	ENST00000359651.3:c.479-3_492del		p.X160_splice	ENST00000359651		160																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992795	72992795	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0043121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	241	631	0	ENST00000268489.5:c.1250C>G	p.Ser417Ter	p.S417*	ENST00000268489	NM_006885.3	417	tCa/tGa																																																																														
EP300	2033	MSKCC	GRCh37	22	41551003	41551003	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	107	386	0	ENST00000263253.7:c.3147C>G	p.Phe1049Leu	p.F1049L	ENST00000263253	NM_001429.3	1049	ttC/ttG																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38947413	38947413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	147	350	0	ENST00000357387.3:c.4267G>A	p.Asp1423Asn	p.D1423N	ENST00000357387	NM_152756.3	1423	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0043130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	216	634	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0043130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	58	411	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0043130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	35	206	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554467	63554468	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGT			P-0043130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	331	636	0	ENST00000307078.5:c.269_271dup	p.Asp90dup	p.D90dup	ENST00000307078	NM_004655.3	90	ggt/gACGgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0043149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	24	407	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	169	817	0	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120483329	120483329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	46	400	0	ENST00000256646.2:c.3032G>A	p.Cys1011Tyr	p.C1011Y	ENST00000256646	NM_024408.3	1011	tGc/tAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418660	49418660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	123	586	0	ENST00000301067.7:c.15854C>G	p.Pro5285Arg	p.P5285R	ENST00000301067	NM_003482.3	5285	cCt/cGt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28901663	28901663	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	36	342	0	ENST00000282397.4:c.2732A>G	p.Tyr911Cys	p.Y911C	ENST00000282397	NM_002019.4	911	tAc/tGc																																																																														
AR	367	MSKCC	GRCh37	X	66766149	66766149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	76	673	0	ENST00000374690.3:c.1161C>G	p.Ile387Met	p.I387M	ENST00000374690	NM_000044.3	387	atC/atG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974718	21974718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	241	547	0	ENST00000304494.5:c.109C>G	p.Leu37Val	p.L37V	ENST00000304494	NM_000077.4	37	Ctg/Gtg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974718	21974718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	241	547	0	ENST00000304494.5:c.109C>G	p.Leu37Val	p.L37V	ENST00000304494	NM_000077.4	37	Ctg/Gtg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299898	15299898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	281	1150	1	ENST00000263388.2:c.1280G>A	p.Arg427His	p.R427H	ENST00000263388	NM_000435.2	427	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519987		P-0043152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	452	849	0	ENST00000269305.4:c.810T>G	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttG																																																																														
TET1	80312	MSKCC	GRCh37	10	70451373	70451373	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	119	702	0	ENST00000373644.4:c.6213A>C	p.Lys2071Asn	p.K2071N	ENST00000373644	NM_030625.2	2071	aaA/aaC																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62322241	62322241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	309	1171	1	ENST00000508582.2:c.2569G>A	p.Gly857Arg	p.G857R	ENST00000508582		857	Ggg/Agg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974724	21974765	+	inframe_deletion	In_Frame_Del	DEL	CCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGG	CCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGG	-			P-0043152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	212	533	0	ENST00000304494.5:c.62_103del	p.Ala21_Ala34del	p.A21_A34del	ENST00000304494	NM_000077.4	21	gCCCGGGGTCGGGTAGAGGAGGTGCGGGCGCTGCTGGAGGCGGgg/ggg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0043160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	555	855	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs199469669		P-0043160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	434	721	0	ENST00000374080.3:c.130G>C	p.Gly44Arg	p.G44R	ENST00000374080		44	Ggt/Cgt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972798	32972798	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876659246		P-0043160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	175	523	0	ENST00000380152.3:c.10148A>G	p.Lys3383Arg	p.K3383R	ENST00000380152		3383	aAa/aGa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433356	138433356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	181	521	1	ENST00000289153.2:c.1256C>A	p.Thr419Asn	p.T419N	ENST00000289153	NM_006219.2	419	aCt/aAt																																																																														
TP63	8626	MSKCC	GRCh37	3	189587126	189587126	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	155	422	0	ENST00000264731.3:c.1143C>G	p.Asn381Lys	p.N381K	ENST00000264731	NM_003722.4	381	aaC/aaG																																																																														
ATRX	546	MSKCC	GRCh37	X	76890129	76890129	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	210	497	0	ENST00000373344.5:c.4765G>T	p.Gly1589Ter	p.G1589*	ENST00000373344	NM_000489.3	1589	Gga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	136	558	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0043201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	406	708	1	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098380	11098380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	125	556	0	ENST00000344626.4:c.898C>T	p.Gln300Ter	p.Q300*	ENST00000344626	NM_003072.3	300	Cag/Tag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729435	41729435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	44	639	0	ENST00000242208.4:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000242208	NM_002192.2	365	tCa/tTa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118891	70118891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	129	656	0	ENST00000245479.2:c.463G>A	p.Val155Met	p.V155M	ENST00000245479	NM_000346.3	155	Gtg/Atg																																																																														
RET	5979	MSKCC	GRCh37	10	43607673	43607673	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0043201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	169	844	0	ENST00000355710.3:c.1648+1G>A		p.X550_splice	ENST00000355710	NM_020975.4	550																																																																															
ETV6	2120	MSKCC	GRCh37	12	12022701	12022701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	130	542	0	ENST00000396373.4:c.807G>A	p.Met269Ile	p.M269I	ENST00000396373	NM_001987.4	269	atG/atA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061200	38061200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	72	442	0	ENST00000250448.2:c.789G>C	p.Gln263His	p.Q263H	ENST00000250448	NM_004496.3	263	caG/caC																																																																														
CBFB	865	MSKCC	GRCh37	16	67063696	67063696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	207	258	0	ENST00000412916.2:c.145C>T	p.Arg49Cys	p.R49C	ENST00000412916		49	Cgc/Tgc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950351	38950351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369474390		P-0043201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	115	557	0	ENST00000357387.3:c.3599G>A	p.Arg1200Gln	p.R1200Q	ENST00000357387	NM_152756.3	1200	cGa/cAa																																																																														
ABL1	25	MSKCC	GRCh37	9	133760077	133760128	+	frameshift_variant	Frame_Shift_Del	DEL	CATCATGGAGTCCAGCCCGGGCTCCAGCCCGCCCAACCTGACTCCAAAACCC	CATCATGGAGTCCAGCCCGGGCTCCAGCCCGCCCAACCTGACTCCAAAACCC	-			P-0043201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	178	852	0	ENST00000318560.5:c.2401_2452del	p.Ile801SerfsTer25	p.I801Sfs*25	ENST00000318560	NM_005157.4	800	gaCATCATGGAGTCCAGCCCGGGCTCCAGCCCGCCCAACCTGACTCCAAAACCC/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	241	768	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038717	47038717	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0043233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	181	427	0	ENST00000329236.7:c.494-1G>C		p.X165_splice	ENST00000329236	NM_001204466.1	165																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105898	27105898	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	260	715	0	ENST00000324856.7:c.5511del	p.Phe1837LeufsTer46	p.F1837Lfs*46	ENST00000324856	NM_006015.4	1837	Ttt/tt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941080	36941081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0043233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	59	842	0	ENST00000361632.4:c.258_259insTA	p.Ile87Ter	p.I87*	ENST00000361632		86	-/TA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913176	32913176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397507737		P-0043233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	82	632	0	ENST00000380152.3:c.4684C>T	p.Gln1562Ter	p.Q1562*	ENST00000380152		1562	Caa/Taa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061050	38061051	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	32	420	0	ENST00000250448.2:c.938dup	p.His314AlafsTer101	p.H314Afs*101	ENST00000250448	NM_004496.3	313	gtg/gtTg																																																																														
RHOA	387	MSKCC	GRCh37	3	49397710	49397710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	165	648	0	ENST00000418115.1:c.514G>C	p.Glu172Gln	p.E172Q	ENST00000418115	NM_001664.2	172	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	498	824	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	143	418	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729874	30729874	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0043237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	183	404	0	ENST00000359013.4:c.1472-2A>C		p.X491_splice	ENST00000359013	NM_001024847.2	491																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81934351	81934351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749548361		P-0043237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	202	799	0	ENST00000359376.3:c.1328C>T	p.Ser443Leu	p.S443L	ENST00000359376	NM_002661.3	443	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	30	334	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs587781642		P-0043252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	95	617	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438225	110438225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	11	118	0	ENST00000375856.3:c.176A>G	p.Glu59Gly	p.E59G	ENST00000375856	NM_003749.2	59	gAg/gGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	469	344	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	157	768	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519992		P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	104	668	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	186	714	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045024	47045024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	150	325	0	ENST00000329236.7:c.2116C>T	p.His706Tyr	p.H706Y	ENST00000329236	NM_001204466.1	706	Cac/Tac																																																																														
RB1	5925	MSKCC	GRCh37	13	48941739	48941739	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	37	256	0	ENST00000267163.4:c.1049G>A	p.Ser350Asn	p.S350N	ENST00000267163	NM_000321.2	350	aGt/aAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951994	178951994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	86	425	0	ENST00000263967.3:c.3049G>A	p.Asp1017Asn	p.D1017N	ENST00000263967	NM_006218.2	1017	Gat/Aat																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852313	63852313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	131	598	0	ENST00000279873.7:c.3091G>T	p.Val1031Leu	p.V1031L	ENST00000279873	NM_032199.2	1031	Gtg/Ttg																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112767358	112767358	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs730881021		P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	109	555	0	ENST00000369452.4:c.1231A>G	p.Thr411Ala	p.T411A	ENST00000369452	NM_007373.3	411	Act/Gct																																																																														
RB1	5925	MSKCC	GRCh37	13	48955394	48955412	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAATCTTGATTCTGGAA	CAGAATCTTGATTCTGGAA	-			P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	49	246	0	ENST00000267163.4:c.1514_1532del	p.Asn505IlefsTer8	p.N505Ifs*8	ENST00000267163	NM_000321.2	504	CAGAATCTTGATTCTGGAAca/ca																																																																														
TSHR	7253	MSKCC	GRCh37	14	81562991	81562991	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	43	451	0	ENST00000298171.2:c.554A>G	p.Tyr185Cys	p.Y185C	ENST00000298171	NM_000369.2	185	tAc/tGc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19258614	19258614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	112	669	0	ENST00000162023.5:c.286G>T	p.Asp96Tyr	p.D96Y	ENST00000162023		96	Gat/Tat																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622496	158622496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	117	476	0	ENST00000263640.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000263640	NM_001105.4	335	Cga/Tga																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660583	227660583	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	137	613	0	ENST00000305123.5:c.2872A>T	p.Thr958Ser	p.T958S	ENST00000305123	NM_005544.2	958	Act/Tct																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62324177	62324177	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs761295679		P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	77	667	0	ENST00000508582.2:c.2744C>G	p.Ala915Gly	p.A915G	ENST00000508582		915	gCa/gGa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754321	57754322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	57	431	0	ENST00000274289.3:c.528_529dup	p.Leu177CysfsTer2	p.L177Cfs*2	ENST00000274289	NM_006622.3	177	ttg/tGTtg																																																																														
HGF	3082	MSKCC	GRCh37	7	81340836	81340836	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	56	229	0	ENST00000222390.5:c.1406-1G>C		p.X469_splice	ENST00000222390	NM_000601.4	469																																																																															
AR	367	MSKCC	GRCh37	X	66766489	66766489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	131	238	0	ENST00000374690.3:c.1501G>T	p.Asp501Tyr	p.D501Y	ENST00000374690	NM_000044.3	501	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	1116	729	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	411	320	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434820	110434820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	620	603	0	ENST00000375856.3:c.3581C>G	p.Pro1194Arg	p.P1194R	ENST00000375856	NM_003749.2	1194	cCt/cGt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95579460	95579460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	167	426	0	ENST00000343455.3:c.2009C>T	p.Pro670Leu	p.P670L	ENST00000343455	NM_177438.2	670	cCa/cTa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929465	81929465	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766133588		P-0043331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	768	582	2	ENST00000359376.3:c.1126C>T	p.Arg376Trp	p.R376W	ENST00000359376	NM_002661.3	376	Cgg/Tgg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913237		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	89	502	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																														
RET	5979	MSKCC	GRCh37	10	43617416	43617416	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	77	596	0	ENST00000355710.3:c.2753T>G	p.Met918Arg	p.M918R	ENST00000355710	NM_020975.4	918	aTg/aGg																																																																														
MGA	23269	MSKCC	GRCh37	15	42058827	42058827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	91	465	0	ENST00000219905.7:c.8547C>A	p.Ser2849Arg	p.S2849R	ENST00000219905	NM_001164273.1	2849	agC/agA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	130	666	2	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
AXL	558	MSKCC	GRCh37	19	41727880	41727880	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756018335		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	157	806	0	ENST00000301178.4:c.505G>A	p.Val169Met	p.V169M	ENST00000301178	NM_021913.4	169	Gtg/Atg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620674	52620674	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	93	403	0	ENST00000394830.3:c.3079C>T	p.Arg1027Ter	p.R1027*	ENST00000394830	NM_018313.4	1027	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	61	542	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	97	442	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	55	323	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																														
CCND3	896	MSKCC	GRCh37	6	41903836	41903836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs540997482		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	95	636	0	ENST00000372991.4:c.721C>T	p.Arg241Trp	p.R241W	ENST00000372991	NM_001760.3	241	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0043333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	102	462	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0043377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	246	780	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110171	3110171	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1335558363		P-0043377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	75	556	0	ENST00000078429.4:c.161C>T	p.Thr54Met	p.T54M	ENST00000078429	NM_002067.2	54	aCg/aTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289642	15289642	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	277	804	3	ENST00000263388.2:c.3829T>A	p.Cys1277Ser	p.C1277S	ENST00000263388	NM_000435.2	1277	Tgt/Agt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851885	134851885	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	58	462	0	ENST00000398015.3:c.1291C>T	p.Gln431Ter	p.Q431*	ENST00000398015	NM_004441.4	431	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0043398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	18	527	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
CBL	867	MSKCC	GRCh37	11	119144723	119144723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs376182596		P-0043415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	70	285	0	ENST00000264033.4:c.736C>T	p.Arg246Ter	p.R246*	ENST00000264033	NM_005188.3	246	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0043415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	212	589	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222214	2222214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768756000		P-0043415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	113	725	2	ENST00000398665.3:c.3046G>A	p.Ala1016Thr	p.A1016T	ENST00000398665	NM_032482.2	1016	Gcc/Acc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201792	66201792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	38	418	2	ENST00000273854.3:c.2710C>A	p.Pro904Thr	p.P904T	ENST00000273854	NM_004439.5	904	Cct/Act																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782144		P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	369	765	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245447	153245447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	310	664	0	ENST00000281708.4:c.1744T>C	p.Ser582Pro	p.S582P	ENST00000281708	NM_033632.3	582	Tcg/Ccg																																																																														
APC	324	MSKCC	GRCh37	5	112175770	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	69	377	1	ENST00000257430.4:c.4480del	p.Glu1494LysfsTer13	p.E1494Kfs*13	ENST00000257430	NM_000038.5	1493	acG/ac																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518358	204518358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs557473906		P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	42	559	0	ENST00000367182.3:c.1021C>T	p.Leu341Phe	p.L341F	ENST00000367182	NM_001278516.1	341	Ctc/Ttc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885006	111885006	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1252209646		P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	238	733	0	ENST00000341259.2:c.1004C>G	p.Thr335Arg	p.T335R	ENST00000341259	NM_005475.2	335	aCa/aGa																																																																														
RB1	5925	MSKCC	GRCh37	13	48939051	48939051	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	39	328	0	ENST00000267163.4:c.883A>C	p.Asn295His	p.N295H	ENST00000267163	NM_000321.2	295	Aat/Cat																																																																														
APC	324	MSKCC	GRCh37	5	112173806	112173806	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	124	409	0	ENST00000257430.4:c.2515G>T	p.Gly839Ter	p.G839*	ENST00000257430	NM_000038.5	839	Gga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	30	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	99	617	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897444	78897444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746953724		P-0043586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	93	656	0	ENST00000306801.3:c.2779C>T	p.Arg927Trp	p.R927W	ENST00000306801	NM_020761.2	927	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0043617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	261	485	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
IRF4	3662	MSKCC	GRCh37	6	401472	401472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	121	260	0	ENST00000380956.4:c.794A>G	p.Glu265Gly	p.E265G	ENST00000380956	NM_001195286.1	265	gAg/gGg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873708	151873708	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1172527602		P-0043617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	235	348	0	ENST00000262189.6:c.8830C>T	p.Pro2944Ser	p.P2944S	ENST00000262189	NM_170606.2	2944	Ccg/Tcg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0043637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	36	515	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0043674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	124	610	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725042	89725042	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs1085308041		P-0043674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	23	198	0	ENST00000371953.3:c.1027-2A>G		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692961	89692961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1060500122		P-0043674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	108	451	0	ENST00000371953.3:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000371953	NM_000314.4	149	Caa/Taa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519886		P-0043674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	49	319	0	ENST00000349496.5:c.97T>G	p.Ser33Ala	p.S33A	ENST00000349496	NM_001904.3	33	Tct/Gct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107152	27107152	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	127	532	0	ENST00000324856.7:c.6763G>T	p.Glu2255Ter	p.E2255*	ENST00000324856	NM_006015.4	2255	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589583	67589585	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0043674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	83	151	0	ENST00000274335.5:c.1346_1348del	p.Leu449_His450delinsTyr	p.L449_H450delinsY	ENST00000274335		449	tTACat/tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0043694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	308	558	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63531786	63531786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373911689		P-0043694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	87	506	0	ENST00000307078.5:c.2195C>T	p.Thr732Met	p.T732M	ENST00000307078	NM_004655.3	732	aCg/aTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42052524	42052524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs918298619		P-0043694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	48	247	0	ENST00000219905.7:c.7195C>T	p.Pro2399Ser	p.P2399S	ENST00000219905	NM_001164273.1	2399	Cca/Tca																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712607	43712607	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	63	662	0	ENST00000382044.4:c.4577A>T	p.Asp1526Val	p.D1526V	ENST00000382044	NM_001141980.1	1526	gAt/gTt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933498	49933498	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1031624199		P-0043694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	218	772	1	ENST00000296474.3:c.2692G>A	p.Val898Met	p.V898M	ENST00000296474	NM_002447.2	898	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	34	248	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876659802		P-0043720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	189	528	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	709	270	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	709	270	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	709	270	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945136	44945137	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGTTAAA			P-0043720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	26	332	0	ENST00000377967.4:c.3467_3468insACAGTTAA	p.Asn1156LysfsTer5	p.N1156Kfs*5	ENST00000377967	NM_021140.2	1154	tca/tCAGTTAAAca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	40	717	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572204	64572204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	41	524	1	ENST00000337652.1:c.1450C>T	p.Arg484Trp	p.R484W	ENST00000337652	NM_130803.2	484	Cgg/Tgg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473696	67473696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	72	575	1	ENST00000327367.4:c.776G>A	p.Gly259Asp	p.G259D	ENST00000327367	NM_005902.3	259	gGc/gAc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0043734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	120	469	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	113	216	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913272		P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	252	183	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
KIT	3815	MSKCC	GRCh37	4	55599296	55599296	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	158	412	0	ENST00000288135.5:c.2422A>G	p.Ile808Val	p.I808V	ENST00000288135	NM_000222.2	808	Att/Gtt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495315	212495315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	52	330	0	ENST00000342788.4:c.1951C>T	p.Pro651Ser	p.P651S	ENST00000342788	NM_005235.2	651	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	383	583	0	ENST00000269305.4:c.298del	p.Gln100ArgfsTer23	p.Q100Rfs*23	ENST00000269305	NM_001126112.2	100	Cag/ag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883987	37883987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	170	612	0	ENST00000269571.5:c.3458G>C	p.Arg1153Pro	p.R1153P	ENST00000269571		1153	cGa/cCa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211537	46211537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	188	244	0	ENST00000334344.6:c.503G>A	p.Gly168Glu	p.G168E	ENST00000334344	NM_152641.2	168	gGa/gAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42000380	42000380	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs778558879		P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	108	280	0	ENST00000219905.7:c.2399A>G	p.His800Arg	p.H800R	ENST00000219905	NM_001164273.1	800	cAt/cGt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348689	89348689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	55	646	0	ENST00000301030.4:c.4261G>A	p.Glu1421Lys	p.E1421K	ENST00000301030	NM_001256183.1	1421	Gaa/Aaa																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216962	7216963	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	295	453	1	ENST00000380728.2:c.558dup	p.Ala187CysfsTer19	p.A187Cfs*19	ENST00000380728		186	-/T																																																																														
TCF3	6929	MSKCC	GRCh37	19	1625587	1625587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	101	552	0	ENST00000344749.5:c.487G>A	p.Asp163Asn	p.D163N	ENST00000344749	NM_001136139.2	163	Gac/Aac																																																																														
CARM1	10498	MSKCC	GRCh37	19	10982589	10982589	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1484713967		P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	17	51	0	ENST00000327064.4:c.211C>G	p.Leu71Val	p.L71V	ENST00000327064	NM_199141.1	71	Ctc/Gtc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45657079	45657079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	89	266	0	ENST00000407780.3:c.77G>C	p.Arg26Thr	p.R26T	ENST00000407780	NM_001283052.1	26	aGa/aCa																																																																														
KDR	3791	MSKCC	GRCh37	4	55958803	55958803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	333	409	0	ENST00000263923.4:c.3050A>G	p.Glu1017Gly	p.E1017G	ENST00000263923	NM_002253.2	1017	gAg/gGg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645139	86645139	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1175378445		P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	99	243	0	ENST00000274376.6:c.1211C>T	p.Thr404Met	p.T404M	ENST00000274376	NM_002890.2	404	aCg/aTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195073	123195073	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0043824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	223	142	0	ENST00000218089.9:c.1417-1G>C		p.X473_splice	ENST00000218089	NM_001042749.1	473																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781871	9781871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	176	842	1	ENST00000377346.4:c.2008G>A	p.Ala670Thr	p.A670T	ENST00000377346	NM_005026.3	670	Gcc/Acc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11291365	11291365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	133	466	1	ENST00000361445.4:c.2641C>T	p.Arg881Cys	p.R881C	ENST00000361445	NM_004958.3	881	Cgc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202698	16202698	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs764320675		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	125	371	0	ENST00000375759.3:c.406G>A	p.Ala136Thr	p.A136T	ENST00000375759	NM_015001.2	136	Gct/Act																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258058	16258058	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766847660		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	125	432	1	ENST00000375759.3:c.5323G>A	p.Glu1775Lys	p.E1775K	ENST00000375759	NM_015001.2	1775	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258541	16258541	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	177	558	0	ENST00000375759.3:c.5806C>T	p.Arg1936Ter	p.R1936*	ENST00000375759	NM_015001.2	1936	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260611	16260611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	194	586	0	ENST00000375759.3:c.7876C>T	p.Pro2626Ser	p.P2626S	ENST00000375759	NM_015001.2	2626	Cct/Tct																																																																														
CDC42	998	MSKCC	GRCh37	1	22417991	22417991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756680625		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	12	37	0	ENST00000344548.3:c.557G>A	p.Arg186His	p.R186H	ENST00000344548	NM_001039802.1	186	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101690	27101690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1442666063		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	243	775	0	ENST00000324856.7:c.4972C>T	p.Arg1658Trp	p.R1658W	ENST00000324856	NM_006015.4	1658	Cgg/Tgg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599897	28599897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145754239		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	146	608	1	ENST00000253063.3:c.779C>T	p.Ala260Val	p.A260V	ENST00000253063	NM_031459.4	260	gCg/gTg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932347	36932347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	186	682	1	ENST00000361632.4:c.2122C>T	p.Pro708Ser	p.P708S	ENST00000361632		708	Ccc/Tcc																																																																														
MPL	4352	MSKCC	GRCh37	1	43803820	43803820	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	184	700	0	ENST00000372470.3:c.130A>C	p.Thr44Pro	p.T44P	ENST00000372470	NM_005373.2	44	Aca/Cca																																																																														
MPL	4352	MSKCC	GRCh37	1	43804262	43804262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	64	551	0	ENST00000372470.3:c.262G>T	p.Gly88Ter	p.G88*	ENST00000372470	NM_005373.2	88	Gga/Tga																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439625	51439625	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142420524		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	89	334	1	ENST00000262662.1:c.190G>A	p.Asp64Asn	p.D64N	ENST00000262662		64	Gat/Aat																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439866	51439866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	113	376	1	ENST00000262662.1:c.431C>T	p.Ala144Val	p.A144V	ENST00000262662		144	gCc/gTc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65344790	65344790	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770735783		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	110	300	0	ENST00000342505.4:c.247G>A	p.Glu83Lys	p.E83K	ENST00000342505	NM_002227.2	83	Gag/Aag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78428591	78428591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	36	295	1	ENST00000370768.2:c.1208G>T	p.Ser403Ile	p.S403I	ENST00000370768	NM_003902.3	403	aGc/aTc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273218	115273218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	132	500	0	ENST00000438362.2:c.1240C>T	p.Arg414Cys	p.R414C	ENST00000438362	NM_001242891.1	414	Cgt/Tgt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466330	120466330	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	181	460	0	ENST00000256646.2:c.4789T>C	p.Ser1597Pro	p.S1597P	ENST00000256646	NM_024408.3	1597	Tca/Cca																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120506383	120506383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	139	429	0	ENST00000256646.2:c.1729G>A	p.Asp577Asn	p.D577N	ENST00000256646	NM_024408.3	577	Gat/Aat																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724542	162724542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1041487062		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	132	528	0	ENST00000367921.3:c.314G>A	p.Arg105His	p.R105H	ENST00000367921	NM_006182.2	105	cGc/cAc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163317623	163317623	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747173543		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	74	333	0	ENST00000271452.3:c.1019C>T	p.Ser340Leu	p.S340L	ENST00000271452	NM_145697.2	340	tCg/tTg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175729	176175729	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	229	737	0	ENST00000367669.3:c.386A>T	p.Asp129Val	p.D129V	ENST00000367669	NM_022457.5	129	gAc/gTc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193091441	193091441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	119	459	1	ENST00000367435.3:c.111G>T	p.Lys37Asn	p.K37N	ENST00000367435	NM_024529.4	37	aaG/aaT																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111048	193111048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	57	202	0	ENST00000367435.3:c.581G>T	p.Arg194Ile	p.R194I	ENST00000367435	NM_024529.4	194	aGa/aTa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193117031	193117031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	121	297	0	ENST00000367435.3:c.764C>A	p.Ser255Tyr	p.S255Y	ENST00000367435	NM_024529.4	255	tCt/tAt																																																																														
IL10	3586	MSKCC	GRCh37	1	206944320	206944320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	159	526	0	ENST00000423557.1:c.310G>T	p.Asp104Tyr	p.D104Y	ENST00000423557	NM_000572.2	104	Gac/Tac																																																																														
PARP1	142	MSKCC	GRCh37	1	226552729	226552729	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746139482		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	136	393	0	ENST00000366794.5:c.2632C>T	p.Arg878Trp	p.R878W	ENST00000366794	NM_001618.3	878	Cgg/Tgg																																																																														
PARP1	142	MSKCC	GRCh37	1	226566960	226566960	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371066735		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	149	422	1	ENST00000366794.5:c.1628C>T	p.Ala543Val	p.A543V	ENST00000366794	NM_001618.3	543	gCg/gTg																																																																														
FH	2271	MSKCC	GRCh37	1	241671902	241671902	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	73	360	0	ENST00000366560.3:c.738+1G>A		p.X246_splice	ENST00000366560	NM_000143.3	246																																																																															
AKT3	10000	MSKCC	GRCh37	1	243858945	243858945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	31	379	0	ENST00000263826.5:c.120G>T	p.Glu40Asp	p.E40D	ENST00000263826	NM_005465.4	40	gaG/gaT																																																																														
RET	5979	MSKCC	GRCh37	10	43597870	43597870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	245	825	0	ENST00000355710.3:c.418C>T	p.Pro140Ser	p.P140S	ENST00000355710	NM_020975.4	140	Cca/Tca																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63661997	63661997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	130	412	0	ENST00000279873.7:c.101G>T	p.Arg34Ile	p.R34I	ENST00000279873	NM_032199.2	34	aGa/aTa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845492	63845492	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs961794143		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	75	215	0	ENST00000279873.7:c.1231G>T	p.Gly411Ter	p.G411*	ENST00000279873	NM_032199.2	411	Gga/Tga																																																																														
TET1	80312	MSKCC	GRCh37	10	70332686	70332686	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	150	559	0	ENST00000373644.4:c.591G>T	p.Glu197Asp	p.E197D	ENST00000373644	NM_030625.2	197	gaG/gaT																																																																														
TET1	80312	MSKCC	GRCh37	10	70446279	70446279	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763447831		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	102	513	1	ENST00000373644.4:c.5219G>A	p.Arg1740His	p.R1740H	ENST00000373644	NM_030625.2	1740	cGc/cAc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88649963	88649963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	124	518	0	ENST00000372037.3:c.212C>T	p.Ala71Val	p.A71V	ENST00000372037	NM_004329.2	71	gCt/gTt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683441	88683441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	29	102	0	ENST00000372037.3:c.1564G>T	p.Ala522Ser	p.A522S	ENST00000372037	NM_004329.2	522	Gcc/Tcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	113	442	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693002	89693003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	84	410	0	ENST00000371953.3:c.491dup	p.Val166SerfsTer14	p.V166Sfs*14	ENST00000371953	NM_000314.4	162	-/A																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903708	114903708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	171	537	0	ENST00000543371.1:c.712G>T	p.Asp238Tyr	p.D238Y	ENST00000543371	NM_001198531.1	238	Gat/Tat																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251848	8251848	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1470323179		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	160	567	0	ENST00000335790.3:c.229G>A	p.Asp77Asn	p.D77N	ENST00000335790	NM_002315.2	77	Gac/Aac																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741414	17741414	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	276	828	0	ENST00000250003.3:c.85T>G	p.Phe29Val	p.F29V	ENST00000250003	NM_002478.4	29	Ttc/Gtc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741792	17741792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	149	461	0	ENST00000250003.3:c.463C>T	p.Arg155Cys	p.R155C	ENST00000250003	NM_002478.4	155	Cgc/Tgc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572285	64572285	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863224810		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	165	659	2	ENST00000337652.1:c.1369C>T	p.Arg457Trp	p.R457W	ENST00000337652	NM_130803.2	457	Cgg/Tgg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573215	64573215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	90	631	1	ENST00000337652.1:c.1092G>T	p.Glu364Asp	p.E364D	ENST00000337652	NM_130803.2	364	gaG/gaT																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573764	64573764	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373135175		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	72	713	0	ENST00000337652.1:c.1004G>A	p.Arg335His	p.R335H	ENST00000337652	NM_130803.2	335	cGc/cAc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577320	64577320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	188	656	1	ENST00000337652.1:c.262G>A	p.Ala88Thr	p.A88T	ENST00000337652	NM_130803.2	88	Gcc/Acc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200440	67200440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761131153		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	150	580	1	ENST00000312629.5:c.634G>A	p.Asp212Asn	p.D212N	ENST00000312629	NM_003952.2	212	Gac/Aac																																																																														
MRE11A	0	MSKCC	GRCh37	11	94169009	94169009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	54	284	0	ENST00000323929.3:c.1983G>T	p.Lys661Asn	p.K661N	ENST00000323929	NM_005591.3	661	aaG/aaT																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189441	94189441	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1381679718		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	89	361	0	ENST00000323929.3:c.1563+1G>A		p.X521_splice	ENST00000323929	NM_005591.3	521																																																																															
MRE11A	0	MSKCC	GRCh37	11	94211920	94211920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	93	389	0	ENST00000323929.3:c.525G>T	p.Lys175Asn	p.K175N	ENST00000323929	NM_005591.3	175	aaG/aaT																																																																														
YAP1	10413	MSKCC	GRCh37	11	102033294	102033294	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376161041		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	138	451	0	ENST00000282441.5:c.680C>T	p.Ser227Leu	p.S227L	ENST00000282441	NM_001130145.2	227	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108114842	108114842	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145355104		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	90	384	0	ENST00000278616.4:c.659C>T	p.Ala220Val	p.A220V	ENST00000278616	NM_000051.3	220	gCg/gTg																																																																														
ATM	472	MSKCC	GRCh37	11	108206575	108206575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138526014		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	40	231	0	ENST00000278616.4:c.8155C>T	p.Arg2719Cys	p.R2719C	ENST00000278616	NM_000051.3	2719	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	85	349	0	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376605	118376605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	94	399	0	ENST00000534358.1:c.9998C>A	p.Ser3333Tyr	p.S3333Y	ENST00000534358	NM_005933.3	3333	tCt/tAt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125503180	125503180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	60	300	0	ENST00000428830.2:c.547G>T	p.Glu183Ter	p.E183*	ENST00000428830	NM_001114121.2	183	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404944	404944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	40	413	0	ENST00000399788.2:c.4250G>T	p.Arg1417Met	p.R1417M	ENST00000399788	NM_001042603.1	1417	aGg/aTg																																																																														
RAD52	5893	MSKCC	GRCh37	12	1023246	1023246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184776294		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	143	517	0	ENST00000358495.3:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000358495	NM_134424.2	337	Gat/Aat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435035	18435035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs191077735		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	63	246	0	ENST00000266497.5:c.20C>T	p.Thr7Met	p.T7M	ENST00000266497		7	aCg/aTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534768	18534768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	134	402	0	ENST00000266497.5:c.1826C>A	p.Thr609Asn	p.T609N	ENST00000266497		609	aCt/aAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123836	46123837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	105	267	0	ENST00000334344.6:c.109dup	p.Ile37AsnfsTer29	p.I37Nfs*29	ENST00000334344	NM_152641.2	34	-/A																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246094	46246094	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	76	336	0	ENST00000334344.6:c.4188A>T	p.Gln1396His	p.Q1396H	ENST00000334344	NM_152641.2	1396	caA/caT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421877	49421877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	204	644	0	ENST00000301067.7:c.14430G>T	p.Lys4810Asn	p.K4810N	ENST00000301067	NM_003482.3	4810	aaG/aaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431915	49431915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	195	855	1	ENST00000301067.7:c.9224C>T	p.Ser3075Leu	p.S3075L	ENST00000301067	NM_003482.3	3075	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434647	49434648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	203	902	0	ENST00000301067.7:c.6905dup	p.Asn2303LysfsTer6	p.N2303Kfs*6	ENST00000301067	NM_003482.3	2302	cca/ccCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448776	49448776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	157	513	0	ENST00000301067.7:c.83C>T	p.Ala28Val	p.A28V	ENST00000301067	NM_003482.3	28	gCc/gTc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50481162	50481162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	106	346	0	ENST00000394963.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000394963	NM_003076.4	183	cGa/cAa																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50492761	50492761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	172	505	0	ENST00000394963.4:c.1526C>T	p.Ala509Val	p.A509V	ENST00000394963	NM_003076.4	509	gCc/gTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489544	56489544	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761002408		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	174	492	2	ENST00000267101.3:c.2009G>A	p.Arg670Gln	p.R670Q	ENST00000267101	NM_001982.3	670	cGg/cAg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859015	57859015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776846382		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	221	718	2	ENST00000228682.2:c.511C>T	p.Arg171Trp	p.R171W	ENST00000228682	NM_005269.2	171	Cgg/Tgg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863334	57863334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	203	785	0	ENST00000228682.2:c.1429G>A	p.Asp477Asn	p.D477N	ENST00000228682	NM_005269.2	477	Gac/Aac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864396	57864396	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768202810		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	153	689	1	ENST00000228682.2:c.1873G>A	p.Glu625Lys	p.E625K	ENST00000228682	NM_005269.2	625	Gag/Aag																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145099	58145099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3211612		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	151	558	0	ENST00000257904.6:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000257904	NM_000075.3	82	cGa/cAa																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813333	102813333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs539899150		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	213	540	2	ENST00000307046.8:c.356G>A	p.Arg119His	p.R119H	ENST00000307046	NM_001111285.1	119	cGc/cAc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888240	112888240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	69	456	0	ENST00000351677.2:c.256G>A	p.Gly86Arg	p.G86R	ENST00000351677	NM_002834.3	86	Ggg/Agg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112915481	112915481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376007642		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	127	439	0	ENST00000351677.2:c.880G>A	p.Asp294Asn	p.D294N	ENST00000351677	NM_002834.3	294	Gat/Aat																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109974	115109974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1286841573		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	208	734	0	ENST00000257566.3:c.1904G>A	p.Arg635His	p.R635H	ENST00000257566	NM_016569.3	635	cGc/cAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118949	115118949	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	48	205	0	ENST00000257566.3:c.392G>A	p.Arg131Gln	p.R131Q	ENST00000257566	NM_016569.3	131	cGa/cAa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426644	121426644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137853243		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	158	545	2	ENST00000257555.6:c.335C>T	p.Pro112Leu	p.P112L	ENST00000257555		112	cCg/cTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133225520	133225520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs5744904		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	136	595	0	ENST00000320574.5:c.4144C>T	p.Arg1382Cys	p.R1382C	ENST00000320574	NM_006231.2	1382	Cgc/Tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133250213	133250213	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs864622766		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	175	671	0	ENST00000320574.5:c.1307C>G	p.Pro436Arg	p.P436R	ENST00000320574	NM_006231.2	436	cCc/cGc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549484	21549484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760026476		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	99	479	2	ENST00000382592.4:c.2792C>T	p.Thr931Met	p.T931M	ENST00000382592	NM_014572.2	931	aCg/aTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588695	28588695	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	76	279	0	ENST00000241453.7:c.2754-1G>T		p.X918_splice	ENST00000241453	NM_004119.2	918																																																																															
FLT3	2322	MSKCC	GRCh37	13	28589312	28589312	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	23	339	0	ENST00000241453.7:c.2735T>A	p.Phe912Tyr	p.F912Y	ENST00000241453	NM_004119.2	912	tTt/tAt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601376	28601376	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	48	327	1	ENST00000241453.7:c.2056C>T	p.Pro686Ser	p.P686S	ENST00000241453	NM_004119.2	686	Cca/Tca																																																																														
FLT1	2321	MSKCC	GRCh37	13	28897032	28897032	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	124	416	0	ENST00000282397.4:c.2848G>T	p.Glu950Ter	p.E950*	ENST00000282397	NM_002019.4	950	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930564	32930564	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	74	228	1	ENST00000380152.3:c.7436-1G>T		p.X2479_splice	ENST00000380152		2479																																																																															
BRCA2	675	MSKCC	GRCh37	13	32931957	32931957	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs80358996		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	65	295	0	ENST00000380152.3:c.7696G>T	p.Asp2566Tyr	p.D2566Y	ENST00000380152		2566	Gat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972336	32972336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	63	430	0	ENST00000380152.3:c.9686C>A	p.Pro3229His	p.P3229H	ENST00000380152		3229	cCt/cAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	47	189	0	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	48955538	48955538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913303		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	61	337	1	ENST00000267163.4:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000267163	NM_000321.2	552	Cga/Tga																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335641	73335641	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	58	227	1	ENST00000377767.4:c.2530G>T	p.Gly844Ter	p.G844*	ENST00000377767	NM_014953.3	844	Gga/Tga																																																																														
DIS3	22894	MSKCC	GRCh37	13	73348154	73348154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	49	365	0	ENST00000377767.4:c.1031G>T	p.Arg344Ile	p.R344I	ENST00000377767	NM_014953.3	344	aGa/aTa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518064	103518064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	107	331	0	ENST00000355739.4:c.2002G>A	p.Ala668Thr	p.A668T	ENST00000355739	NM_000123.3	668	Gca/Aca																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061291	38061291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	209	742	1	ENST00000250448.2:c.698G>A	p.Arg233His	p.R233H	ENST00000250448	NM_004496.3	233	cGc/cAc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68353867	68353867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	100	385	1	ENST00000487270.1:c.702C>A	p.Phe234Leu	p.F234L	ENST00000487270	NM_133509.3	234	ttC/ttA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95598872	95598872	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770567567		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	83	357	1	ENST00000343455.3:c.287C>T	p.Thr96Met	p.T96M	ENST00000343455	NM_177438.2	96	aCg/aTg																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023446	33023446	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	209	689	0	ENST00000300177.4:c.555A>C	p.Ter185TyrextTer29	p.*185Yext*29	ENST00000300177	NM_001191322.1	185	taA/taC																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38616972	38616972	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764823722		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	96	257	0	ENST00000299084.4:c.385G>A	p.Glu129Lys	p.E129K	ENST00000299084	NM_152594.2	129	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961493	41961493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771815727		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	108	546	0	ENST00000219905.7:c.401G>A	p.Arg134His	p.R134H	ENST00000219905	NM_001164273.1	134	cGt/cAt																																																																														
MGA	23269	MSKCC	GRCh37	15	41991306	41991306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	79	539	0	ENST00000219905.7:c.2137G>T	p.Asp713Tyr	p.D713Y	ENST00000219905	NM_001164273.1	713	Gat/Tat																																																																														
MGA	23269	MSKCC	GRCh37	15	42019489	42019489	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	154	521	0	ENST00000219905.7:c.3542A>T	p.Glu1181Val	p.E1181V	ENST00000219905	NM_001164273.1	1181	gAg/gTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42021428	42021428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	129	421	1	ENST00000219905.7:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000219905	NM_001164273.1	1242	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42041957	42041957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	92	489	0	ENST00000219905.7:c.6152C>T	p.Ser2051Phe	p.S2051F	ENST00000219905	NM_001164273.1	2051	tCc/tTc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701243	43701243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769912966		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	155	519	0	ENST00000382044.4:c.5452C>T	p.Arg1818Trp	p.R1818W	ENST00000382044	NM_001141980.1	1818	Cgg/Tgg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701889	43701889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	51	225	0	ENST00000382044.4:c.5356C>T	p.Arg1786Ter	p.R1786*	ENST00000382044	NM_001141980.1	1786	Cga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43705321	43705321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	115	653	0	ENST00000382044.4:c.5301G>T	p.Glu1767Asp	p.E1767D	ENST00000382044	NM_001141980.1	1767	gaG/gaT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749242	43749242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	137	605	1	ENST00000382044.4:c.1564C>T	p.Leu522Phe	p.L522F	ENST00000382044	NM_001141980.1	522	Ctt/Ttt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457696	67457696	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772034969		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	148	587	1	ENST00000327367.4:c.506G>A	p.Gly169Asp	p.G169D	ENST00000327367	NM_005902.3	169	gGc/gAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476262	88476262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	100	487	0	ENST00000360948.2:c.1870G>T	p.Asp624Tyr	p.D624Y	ENST00000360948	NM_001012338.2	624	Gac/Tac																																																																														
IDH2	3418	MSKCC	GRCh37	15	90634813	90634813	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757504997		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	155	524	0	ENST00000330062.3:c.179G>A	p.Arg60His	p.R60H	ENST00000330062	NM_002168.2	60	cGt/cAt																																																																														
BLM	641	MSKCC	GRCh37	15	91298043	91298043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs755724766		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	43	276	1	ENST00000355112.3:c.962C>T	p.Thr321Met	p.T321M	ENST00000355112	NM_000057.2	321	aCg/aTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465390	99465390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	106	374	0	ENST00000268035.6:c.2215C>T	p.Arg739Trp	p.R739W	ENST00000268035	NM_000875.3	739	Cgg/Tgg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347146	347146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	226	806	0	ENST00000262320.3:c.1865C>T	p.Ala622Val	p.A622V	ENST00000262320	NM_003502.3	622	gCc/gTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112532	2112532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202187148		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	155	774	0	ENST00000219476.3:c.1292C>T	p.Ala431Val	p.A431V	ENST00000219476	NM_000548.3	431	gCg/gTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126103	2126103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376801256		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	248	741	0	ENST00000219476.3:c.2674G>A	p.Val892Ile	p.V892I	ENST00000219476	NM_000548.3	892	Gtc/Atc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2135250	2135250	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	188	889	0	ENST00000219476.3:c.4589C>A	p.Ser1530Ter	p.S1530*	ENST00000219476	NM_000548.3	1530	tCg/tAg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647685	3647685	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1160715108		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	200	797	1	ENST00000294008.3:c.1378C>T	p.Arg460Cys	p.R460C	ENST00000294008	NM_032444.2	460	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777838	3777838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863223334		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	249	973	3	ENST00000262367.5:c.7210G>A	p.Glu2404Lys	p.E2404K	ENST00000262367	NM_004380.2	2404	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934524	9934524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	109	387	0	ENST00000330684.3:c.1631T>C	p.Val544Ala	p.V544A	ENST00000330684	NM_001134407.1	544	gTc/gCc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934525	9934525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	127	390	0	ENST00000330684.3:c.1630G>A	p.Val544Ile	p.V544I	ENST00000330684	NM_001134407.1	544	Gtc/Atc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943680	9943680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	158	630	0	ENST00000330684.3:c.1261G>T	p.Asp421Tyr	p.D421Y	ENST00000330684	NM_001134407.1	421	Gac/Tac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032281	10032281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	154	584	0	ENST00000330684.3:c.542G>T	p.Arg181Met	p.R181M	ENST00000330684	NM_001134407.1	181	aGg/aTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274037	10274037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	195	843	2	ENST00000330684.3:c.232G>A	p.Asp78Asn	p.D78N	ENST00000330684	NM_001134407.1	78	Gac/Aac																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041765	14041765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	37	378	0	ENST00000311895.7:c.2312C>T	p.Ser771Phe	p.S771F	ENST00000311895	NM_005236.2	771	tCc/tTc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641672	23641672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	110	475	0	ENST00000261584.4:c.1803G>T	p.Lys601Asn	p.K601N	ENST00000261584	NM_024675.3	601	aaG/aaT																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646395	23646395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	147	544	0	ENST00000261584.4:c.1472C>A	p.Ala491Asp	p.A491D	ENST00000261584	NM_024675.3	491	gCt/gAt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647241	23647241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	139	597	0	ENST00000261584.4:c.626C>A	p.Ser209Tyr	p.S209Y	ENST00000261584	NM_024675.3	209	tCt/tAt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825509	50825509	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	86	349	0	ENST00000398568.2:c.2140A>T	p.Ile714Phe	p.I714F	ENST00000398568	NM_001042412.1	714	Att/Ttt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868319	56868319	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748524706		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	76	291	0	ENST00000308159.5:c.1702C>T	p.Arg568Cys	p.R568C	ENST00000308159	NM_014669.4	568	Cgc/Tgc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645159	67645159	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1175444753		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	119	624	0	ENST00000264010.4:c.424G>A	p.Val142Met	p.V142M	ENST00000264010	NM_006565.3	142	Gtg/Atg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654646	67654646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	154	476	0	ENST00000264010.4:c.1133C>T	p.Pro378Leu	p.P378L	ENST00000264010	NM_006565.3	378	cCg/cTg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655431	67655431	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	146	539	2	ENST00000264010.4:c.1294G>T	p.Glu432Ter	p.E432*	ENST00000264010	NM_006565.3	432	Gaa/Taa																																																																														
CDH1	999	MSKCC	GRCh37	16	68844193	68844193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121964873		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	181	684	1	ENST00000261769.5:c.781G>A	p.Glu261Lys	p.E261K	ENST00000261769	NM_004360.3	261	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821815	72821815	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770453754		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	98	507	2	ENST00000268489.5:c.10360G>A	p.Asp3454Asn	p.D3454N	ENST00000268489	NM_006885.3	3454	Gac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827732	72827732	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1241554729		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	142	482	1	ENST00000268489.5:c.8849G>A	p.Arg2950His	p.R2950H	ENST00000268489	NM_006885.3	2950	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829922	72829922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	223	598	1	ENST00000268489.5:c.6659A>T	p.Glu2220Val	p.E2220V	ENST00000268489	NM_006885.3	2220	gAg/gTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81971407	81971407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376667295		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	124	486	0	ENST00000359376.3:c.3097C>T	p.Arg1033Cys	p.R1033C	ENST00000359376	NM_002661.3	1033	Cgc/Tgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347080	89347080	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs922813408		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	178	644	0	ENST00000301030.4:c.5870C>T	p.Ala1957Val	p.A1957V	ENST00000301030	NM_001256183.1	1957	gCg/gTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347486	89347486	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373805397		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	160	660	0	ENST00000301030.4:c.5464G>A	p.Asp1822Asn	p.D1822N	ENST00000301030	NM_001256183.1	1822	Gac/Aac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348669	89348669	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1421678693		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	207	869	1	ENST00000301030.4:c.4281G>T	p.Lys1427Asn	p.K1427N	ENST00000301030	NM_001256183.1	1427	aaG/aaT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350710	89350710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138898373		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	206	857	0	ENST00000301030.4:c.2240C>T	p.Ser747Leu	p.S747L	ENST00000301030	NM_001256183.1	747	tCg/tTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805675	89805675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	144	570	0	ENST00000389301.3:c.4033G>T	p.Asp1345Tyr	p.D1345Y	ENST00000389301	NM_000135.2	1345	Gac/Tac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89828358	89828358	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs755546887		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	69	399	0	ENST00000389301.3:c.2851C>T	p.Arg951Trp	p.R951W	ENST00000389301	NM_000135.2	951	Cgg/Tgg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217622	7217622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	91	402	0	ENST00000380728.2:c.305G>A	p.Arg102Gln	p.R102Q	ENST00000380728		102	cGa/cAa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7983234	7983234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	170	621	0	ENST00000319144.4:c.780G>T	p.Glu260Asp	p.E260D	ENST00000319144	NM_001139.2	260	gaG/gaT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075199	16075199	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	169	340	0	ENST00000268712.3:c.353A>G	p.His118Arg	p.H118R	ENST00000268712	NM_006311.3	118	cAt/cGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29554309	29554309	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	233	691	0	ENST00000358273.4:c.2325G>T	p.Glu775Asp	p.E775D	ENST00000358273	NM_001042492.2	775	gaG/gaT																																																																														
NF1	4763	MSKCC	GRCh37	17	29562981	29562981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs376576925		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	84	443	1	ENST00000358273.4:c.3916C>T	p.Arg1306Ter	p.R1306*	ENST00000358273	NM_001042492.2	1306	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29654716	29654716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	103	347	0	ENST00000358273.4:c.5468C>A	p.Ser1823Tyr	p.S1823Y	ENST00000358273	NM_001042492.2	1823	tCt/tAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29654842	29654842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	72	245	0	ENST00000358273.4:c.5594C>T	p.Ser1865Phe	p.S1865F	ENST00000358273	NM_001042492.2	1865	tCt/tTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29665149	29665149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	123	450	0	ENST00000358273.4:c.6811C>T	p.Leu2271Phe	p.L2271F	ENST00000358273	NM_001042492.2	2271	Ctt/Ttt																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786202457		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	65	320	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657596	37657596	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748453656		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	108	556	1	ENST00000447079.4:c.2513C>T	p.Ser838Leu	p.S838L	ENST00000447079	NM_015083.1	838	tCg/tTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37856556	37856556	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs896376245		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	128	393	0	ENST00000269571.5:c.65G>A	p.Ser22Asn	p.S22N	ENST00000269571		22	aGc/aAc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40353772	40353772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752309096		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	187	624	0	ENST00000293328.3:c.2348C>T	p.Pro783Leu	p.P783L	ENST00000293328	NM_012448.3	783	cCg/cTg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40371822	40371822	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1396130852		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	148	678	0	ENST00000293328.3:c.589C>T	p.Arg197Cys	p.R197C	ENST00000293328	NM_012448.3	197	Cgt/Tgt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375526	40375526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	178	527	0	ENST00000293328.3:c.424C>A	p.Leu142Ile	p.L142I	ENST00000293328	NM_012448.3	142	Ctc/Atc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40870631	40870631	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs751414770		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	145	465	1	ENST00000428826.2:c.772C>T	p.Arg258Ter	p.R258*	ENST00000428826		258	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245603	41245603	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs80356907		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	156	609	0	ENST00000357654.3:c.1945G>T	p.Glu649Ter	p.E649*	ENST00000357654	NM_007294.3	649	Gag/Tag																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805786	46805786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	133	682	2	ENST00000290295.7:c.170C>T	p.Ala57Val	p.A57V	ENST00000290295	NM_006361.5	57	gCg/gTg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805840	46805840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	130	597	0	ENST00000290295.7:c.116C>T	p.Ala39Val	p.A39V	ENST00000290295	NM_006361.5	39	gCg/gTg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58701078	58701078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	144	498	1	ENST00000305921.3:c.669G>T	p.Lys223Asn	p.K223N	ENST00000305921	NM_003620.3	223	aaG/aaT																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59820395	59820395	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	99	360	1	ENST00000259008.2:c.2358T>A	p.Phe786Leu	p.F786L	ENST00000259008	NM_032043.2	786	ttT/ttA																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66522016	66522016	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	69	244	0	ENST00000358598.2:c.674del	p.Gly225AlafsTer16	p.G225Afs*16	ENST00000358598	NM_212471.2	224	tGg/tg																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66523999	66523999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	52	191	0	ENST00000358598.2:c.727C>T	p.Arg243Trp	p.R243W	ENST00000358598	NM_212471.2	243	Cgg/Tgg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732523	74732523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	31	177	0	ENST00000359995.5:c.386G>A	p.Arg129Gln	p.R129Q	ENST00000359995	NM_001195427.1	129	cGa/cAa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78831701	78831701	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1251049844		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	191	635	0	ENST00000306801.3:c.1509+1G>A		p.X503_splice	ENST00000306801	NM_020761.2	503																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78866606	78866606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	157	627	0	ENST00000306801.3:c.2179C>T	p.Arg727Cys	p.R727C	ENST00000306801	NM_020761.2	727	Cgt/Tgt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78933888	78933888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	161	614	1	ENST00000306801.3:c.3488C>T	p.Thr1163Met	p.T1163M	ENST00000306801	NM_020761.2	1163	aCg/aTg																																																																														
YES1	7525	MSKCC	GRCh37	18	745706	745706	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	97	378	0	ENST00000314574.4:c.724+2T>C		p.X242_splice	ENST00000314574	NM_005433.3	242																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615791	1615791	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs562975911		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	78	739	0	ENST00000344749.5:c.1480G>A	p.Ala494Thr	p.A494T	ENST00000344749	NM_001136139.2	494	Gcc/Acc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4101240	4101240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	153	777	0	ENST00000262948.5:c.567G>T	p.Gln189His	p.Q189H	ENST00000262948	NM_030662.3	189	caG/caT																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222993	5222993	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762510209		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	169	581	4	ENST00000357368.4:c.2810C>T	p.Ala937Val	p.A937V	ENST00000357368	NM_002850.3	937	gCg/gTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7267416	7267416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	182	452	0	ENST00000302850.5:c.592G>A	p.Ala198Thr	p.A198T	ENST00000302850	NM_000208.2	198	Gcc/Acc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250770	10250770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1290055474		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	171	730	1	ENST00000340748.4:c.3710C>T	p.Ser1237Leu	p.S1237L	ENST00000340748		1237	tCg/tTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10257170	10257170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	132	494	1	ENST00000340748.4:c.2703G>T	p.Glu901Asp	p.E901D	ENST00000340748		901	gaG/gaT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10267124	10267124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751093624		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	215	491	0	ENST00000340748.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000340748		432	Gaa/Aaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602404	10602404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1432914621		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	194	873	1	ENST00000171111.5:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000171111	NM_203500.1	392	Gcc/Acc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123685	11123685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	195	643	0	ENST00000344626.4:c.2335G>A	p.Asp779Asn	p.D779N	ENST00000344626	NM_003072.3	779	Gac/Aac																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627456	14627456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	176	588	0	ENST00000254322.2:c.614C>T	p.Thr205Ile	p.T205I	ENST00000254322	NM_006145.1	205	aCc/aTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272201	15272201	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113178142		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	37	661	1	ENST00000263388.2:c.6238C>T	p.Arg2080Trp	p.R2080W	ENST00000263388	NM_000435.2	2080	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212357	36212357	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1476081557		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	202	794	0	ENST00000222270.7:c.2108G>T	p.Ser703Ile	p.S703I	ENST00000222270	NM_014727.1	703	aGc/aTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36215951	36215951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	237	734	0	ENST00000222270.7:c.3491C>A	p.Ser1164Tyr	p.S1164Y	ENST00000222270	NM_014727.1	1164	tCt/tAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229027	36229027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	227	727	1	ENST00000222270.7:c.7807G>A	p.Glu2603Lys	p.E2603K	ENST00000222270	NM_014727.1	2603	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229239	36229239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	195	718	0	ENST00000222270.7:c.7929G>A	p.Met2643Ile	p.M2643I	ENST00000222270	NM_014727.1	2643	atG/atA																																																																														
AKT2	208	MSKCC	GRCh37	19	40741173	40741173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	155	735	0	ENST00000392038.2:c.1260G>T	p.Lys420Asn	p.K420N	ENST00000392038	NM_001626.4	420	aaG/aaT																																																																														
AXL	558	MSKCC	GRCh37	19	41763456	41763456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	153	595	0	ENST00000301178.4:c.2255G>A	p.Gly752Asp	p.G752D	ENST00000301178	NM_021913.4	752	gGc/gAc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753276	42753276	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756887571		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	275	963	2	ENST00000222329.4:c.988G>A	p.Ala330Thr	p.A330T	ENST00000222329	NM_006494.2	330	Gcc/Acc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753644	42753644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759092904		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	233	826	0	ENST00000222329.4:c.620G>A	p.Arg207Gln	p.R207Q	ENST00000222329	NM_006494.2	207	cGa/cAa																																																																														
ERF	2077	MSKCC	GRCh37	19	42754650	42754650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	169	633	0	ENST00000222329.4:c.90G>T	p.Trp30Cys	p.W30C	ENST00000222329	NM_006494.2	30	tgG/tgT																																																																														
CIC	23152	MSKCC	GRCh37	19	42795121	42795121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778197		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	239	857	0	ENST00000575354.2:c.2201C>T	p.Ser734Leu	p.S734L	ENST00000575354	NM_015125.3	734	tCg/tTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796254	42796254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	197	755	0	ENST00000575354.2:c.2903C>T	p.Pro968Leu	p.P968L	ENST00000575354	NM_015125.3	968	cCg/cTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796987	42796987	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	238	865	1	ENST00000575354.2:c.3445A>G	p.Thr1149Ala	p.T1149A	ENST00000575354	NM_015125.3	1149	Act/Gct																																																																														
CIC	23152	MSKCC	GRCh37	19	42797804	42797804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141205881		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	186	757	0	ENST00000575354.2:c.3856C>T	p.Arg1286Cys	p.R1286C	ENST00000575354	NM_015125.3	1286	Cgt/Tgt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909556	50909556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs906743894		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	141	752	0	ENST00000440232.2:c.1360C>T	p.Arg454Cys	p.R454C	ENST00000440232	NM_002691.3	454	Cgc/Tgc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909559	50909559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762670703		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	141	742	2	ENST00000440232.2:c.1363G>A	p.Val455Met	p.V455M	ENST00000440232	NM_002691.3	455	Gtg/Atg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52719064	52719064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	132	557	0	ENST00000322088.6:c.840G>T	p.Lys280Asn	p.K280N	ENST00000322088	NM_014225.5	280	aaG/aaT																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966325	25966325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	62	629	0	ENST00000435504.4:c.2881G>A	p.Asp961Asn	p.D961N	ENST00000435504		961	Gat/Aat																																																																														
ALK	238	MSKCC	GRCh37	2	29416598	29416598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	110	466	0	ENST00000389048.3:c.4355C>A	p.Ala1452Asp	p.A1452D	ENST00000389048	NM_004304.4	1452	gCt/gAt																																																																														
ALK	238	MSKCC	GRCh37	2	29448365	29448365	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	259	996	0	ENST00000389048.3:c.3134T>G	p.Val1045Gly	p.V1045G	ENST00000389048	NM_004304.4	1045	gTg/gGg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250353	39250353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	117	566	2	ENST00000402219.2:c.1216C>T	p.Arg406Trp	p.R406W	ENST00000402219	NM_005633.3	406	Cgg/Tgg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39251201	39251201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	103	513	0	ENST00000402219.2:c.1152G>T	p.Gln384His	p.Q384H	ENST00000402219	NM_005633.3	384	caG/caT																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281838	39281838	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	107	451	0	ENST00000402219.2:c.637C>T	p.Arg213Ter	p.R213*	ENST00000402219	NM_005633.3	213	Cga/Tga																																																																														
MSH2	4436	MSKCC	GRCh37	2	47641516	47641516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	84	316	0	ENST00000233146.2:c.901A>G	p.Lys301Glu	p.K301E	ENST00000233146	NM_000251.2	301	Aaa/Gaa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs63751411		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	72	269	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027354	48027354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	78	319	0	ENST00000234420.5:c.2232G>T	p.Glu744Asp	p.E744D	ENST00000234420	NM_000179.2	744	gaG/gaT																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	134	424	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
REL	5966	MSKCC	GRCh37	2	61144132	61144132	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1253056300		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	111	459	0	ENST00000295025.8:c.515C>T	p.Ser172Leu	p.S172L	ENST00000295025	NM_002908.2	172	tCg/tTg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99152291	99152291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	125	384	0	ENST00000074304.5:c.370G>T	p.Asp124Tyr	p.D124Y	ENST00000074304	NM_001134224.1	124	Gat/Tat																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99179935	99179935	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	193	704	0	ENST00000074304.5:c.1878G>A	p.Trp626Ter	p.W626*	ENST00000074304	NM_001134224.1	626	tgG/tgA																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907686	111907686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370016302		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	120	387	0	ENST00000393256.3:c.460C>T	p.Arg154Cys	p.R154C	ENST00000393256	NM_006538.4	154	Cgt/Tgt																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111921737	111921737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1170116948		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	119	371	0	ENST00000393256.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000393256	NM_006538.4	176	Gaa/Aaa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128030502	128030502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	38	563	0	ENST00000285398.2:c.1766G>T	p.Arg589Met	p.R589M	ENST00000285398	NM_000122.1	589	aGg/aTg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038133	128038133	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1369244363		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	120	404	0	ENST00000285398.2:c.1417G>A	p.Glu473Lys	p.E473K	ENST00000285398	NM_000122.1	473	Gaa/Aaa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046995	128046995	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	162	579	0	ENST00000285398.2:c.740A>G	p.Asp247Gly	p.D247G	ENST00000285398	NM_000122.1	247	gAc/gGc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128051271	128051271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	127	580	0	ENST00000285398.2:c.52C>T	p.His18Tyr	p.H18Y	ENST00000285398	NM_000122.1	18	Cac/Tac																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204737491	204737491	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	74	354	0	ENST00000302823.3:c.628G>T	p.Glu210Ter	p.E210*	ENST00000302823	NM_005214.4	210	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212293145	212293145	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs764667767		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	52	272	0	ENST00000342788.4:c.2707G>A	p.Val903Ile	p.V903I	ENST00000342788	NM_005235.2	903	Gtt/Att																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212615424	212615424	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752051535		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	47	430	0	ENST00000342788.4:c.562C>T	p.Arg188Cys	p.R188C	ENST00000342788	NM_005235.2	188	Cgt/Tgt																																																																														
INHA	3623	MSKCC	GRCh37	2	220439504	220439504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	153	594	1	ENST00000243786.2:c.357G>T	p.Gln119His	p.Q119H	ENST00000243786	NM_002191.3	119	caG/caT																																																																														
CUL3	8452	MSKCC	GRCh37	2	225365174	225365174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	132	334	1	ENST00000264414.4:c.1516C>T	p.Arg506Trp	p.R506W	ENST00000264414	NM_003590.4	506	Cgg/Tgg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225379333	225379333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	107	411	0	ENST00000264414.4:c.535G>T	p.Asp179Tyr	p.D179Y	ENST00000264414	NM_003590.4	179	Gac/Tac																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793286	242793286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757334336		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	227	943	0	ENST00000334409.5:c.791G>A	p.Arg264His	p.R264H	ENST00000334409	NM_005018.2	264	cGc/cAc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794111	242794111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	171	665	0	ENST00000334409.5:c.617G>A	p.Gly206Asp	p.G206D	ENST00000334409	NM_005018.2	206	gGc/gAc																																																																														
PAK7	0	MSKCC	GRCh37	20	9525088	9525088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	114	444	0	ENST00000353224.5:c.1797G>T	p.Lys599Asn	p.K599N	ENST00000353224	NM_177990.2	599	aaG/aaT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021634	31021634	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137920574		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	146	498	0	ENST00000375687.4:c.1633C>T	p.Arg545Cys	p.R545C	ENST00000375687	NM_015338.5	545	Cgt/Tgt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31383317	31383317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772079891		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	171	529	0	ENST00000328111.2:c.1229G>A	p.Arg410Gln	p.R410Q	ENST00000328111	NM_006892.3	410	cGa/cAa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31390243	31390243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747182299		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	180	506	0	ENST00000328111.2:c.2198G>A	p.Arg733Gln	p.R733Q	ENST00000328111	NM_006892.3	733	cGa/cAa																																																																														
SRC	6714	MSKCC	GRCh37	20	36031588	36031588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	164	686	1	ENST00000358208.4:c.1417G>A	p.Glu473Lys	p.E473K	ENST00000358208		473	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763964405		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	118	459	0	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656879	45656879	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370218763		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	227	658	0	ENST00000407780.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000407780	NM_001283052.1	93	Cgg/Tgg																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22162026	22162026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	137	509	1	ENST00000215832.6:c.229C>T	p.Arg77Cys	p.R77C	ENST00000215832	NM_002745.4	77	Cgc/Tgc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24158976	24158976	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	143	586	0	ENST00000263121.7:c.648G>T	p.Glu216Asp	p.E216D	ENST00000263121	NM_003073.3	216	gaG/gaT																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130622	29130622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	135	512	0	ENST00000328354.6:c.88G>T	p.Gly30Cys	p.G30C	ENST00000328354	NM_007194.3	30	Ggc/Tgc																																																																														
EP300	2033	MSKCC	GRCh37	22	41523588	41523588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	180	562	0	ENST00000263253.7:c.1004G>A	p.Arg335His	p.R335H	ENST00000263253	NM_001429.3	335	cGc/cAc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458377	12458377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	175	634	0	ENST00000287820.6:c.994C>T	p.Pro332Ser	p.P332S	ENST00000287820	NM_015869.4	332	Cct/Tct																																																																														
RAF1	5894	MSKCC	GRCh37	3	12660097	12660097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200856000		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	73	447	2	ENST00000251849.4:c.124G>A	p.Ala42Thr	p.A42T	ENST00000251849	NM_002880.3	42	Gca/Aca																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691841	30691841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	99	387	0	ENST00000359013.4:c.418G>T	p.Asp140Tyr	p.D140Y	ENST00000359013	NM_001024847.2	140	Gat/Tat																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732932	30732932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	94	320	0	ENST00000359013.4:c.1620G>T	p.Glu540Asp	p.E540D	ENST00000359013	NM_001024847.2	540	gaG/gaT																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275291	41275291	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750554859		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	124	377	0	ENST00000349496.5:c.1457G>A	p.Arg486His	p.R486H	ENST00000349496	NM_001904.3	486	cGc/cAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47139464	47139464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	137	499	0	ENST00000409792.3:c.5123G>A	p.Arg1708Gln	p.R1708Q	ENST00000409792	NM_014159.6	1708	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47139557	47139557	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	96	329	0	ENST00000409792.3:c.5030A>T	p.Lys1677Ile	p.K1677I	ENST00000409792	NM_014159.6	1677	aAa/aTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162795	47162795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760289594		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	62	324	0	ENST00000409792.3:c.3331C>T	p.His1111Tyr	p.H1111Y	ENST00000409792	NM_014159.6	1111	Cat/Tat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164132	47164132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	48	271	0	ENST00000409792.3:c.1994G>T	p.Ser665Ile	p.S665I	ENST00000409792	NM_014159.6	665	aGt/aTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164311	47164311	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	59	291	0	ENST00000409792.3:c.1815A>C	p.Lys605Asn	p.K605N	ENST00000409792	NM_014159.6	605	aaA/aaC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164856	47164856	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1278528667		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	65	276	0	ENST00000409792.3:c.1270C>T	p.Arg424Ter	p.R424*	ENST00000409792	NM_014159.6	424	Cga/Tga																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927934	49927934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764547217		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	131	516	0	ENST00000296474.3:c.3794C>T	p.Thr1265Ile	p.T1265I	ENST00000296474	NM_002447.2	1265	aCc/aTc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442566	52442566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	150	424	0	ENST00000460680.1:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000460680	NM_004656.3	60	cGa/cAa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620566	52620566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746373271		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	161	460	0	ENST00000394830.3:c.3187C>T	p.Arg1063Trp	p.R1063W	ENST00000394830	NM_018313.4	1063	Cgg/Tgg																																																																														
MITF	4286	MSKCC	GRCh37	3	70014044	70014044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	132	382	0	ENST00000352241.4:c.1208C>A	p.Ser403Tyr	p.S403Y	ENST00000352241	NM_198159.2	403	tCc/tAc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71064699	71064699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	103	299	0	ENST00000318789.4:c.974+1G>T		p.X325_splice	ENST00000318789	NM_032682.5	325																																																																															
PPP4R2	151987	MSKCC	GRCh37	3	73112826	73112826	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	52	183	0	ENST00000356692.5:c.422A>C	p.Lys141Thr	p.K141T	ENST00000356692		141	aAa/aCa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259104	89259104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	77	275	0	ENST00000336596.2:c.248G>A	p.Arg83Lys	p.R83K	ENST00000336596	NM_005233.5	83	aGa/aAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259437	89259437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	101	499	0	ENST00000336596.2:c.581C>A	p.Ser194Tyr	p.S194Y	ENST00000336596	NM_005233.5	194	tCt/tAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391088	89391088	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767254790		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	191	624	0	ENST00000336596.2:c.1154G>A	p.Arg385Gln	p.R385Q	ENST00000336596	NM_005233.5	385	cGa/cAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89457220	89457220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	62	252	0	ENST00000336596.2:c.1701C>A	p.Phe567Leu	p.F567L	ENST00000336596	NM_005233.5	567	ttC/ttA																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582302	119582302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	141	336	1	ENST00000316626.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000316626		367	Cga/Tga																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582439	119582439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775606264		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	82	237	0	ENST00000316626.5:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000316626		321	cGa/cAa																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119595317	119595317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	52	257	0	ENST00000316626.5:c.852G>T	p.Met284Ile	p.M284I	ENST00000316626		284	atG/atT																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202797	128202797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	219	688	0	ENST00000341105.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000341105	NM_032638.4	308	cGg/cAg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967321	134967321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	149	459	0	ENST00000398015.3:c.2660G>A	p.Ser887Asn	p.S887N	ENST00000398015	NM_004441.4	887	aGt/aAt																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665249	138665249	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	223	888	2	ENST00000330315.3:c.316C>A	p.Leu106Ile	p.L106I	ENST00000330315	NM_023067.3	106	Ctc/Atc																																																																														
ATR	545	MSKCC	GRCh37	3	142185243	142185243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	53	450	1	ENST00000350721.4:c.6820C>A	p.Leu2274Met	p.L2274M	ENST00000350721	NM_001184.3	2274	Ctg/Atg																																																																														
ATR	545	MSKCC	GRCh37	3	142188268	142188268	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	62	373	0	ENST00000350721.4:c.6463G>T	p.Glu2155Ter	p.E2155*	ENST00000350721	NM_001184.3	2155	Gaa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142254972	142254972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	36	193	0	ENST00000350721.4:c.3797C>T	p.Ala1266Val	p.A1266V	ENST00000350721	NM_001184.3	1266	gCc/gTc																																																																														
ATR	545	MSKCC	GRCh37	3	142277581	142277581	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	77	312	0	ENST00000350721.4:c.1770A>T	p.Leu590Phe	p.L590F	ENST00000350721	NM_001184.3	590	ttA/ttT																																																																														
ATR	545	MSKCC	GRCh37	3	142286928	142286928	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751709684		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	110	357	1	ENST00000350721.4:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000350721	NM_001184.3	43	cGg/cAg																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260222	149260222	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766572084		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	231	747	2	ENST00000360632.3:c.671C>T	p.Ala224Val	p.A224V	ENST00000360632	NM_015472.4	224	gCg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	146	581	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430999	181430999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	176	764	0	ENST00000325404.1:c.851C>A	p.Pro284Gln	p.P284Q	ENST00000325404	NM_003106.3	284	cCg/cAg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198253	185198253	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1370479462		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	187	533	0	ENST00000265026.3:c.2735C>T	p.Ala912Val	p.A912V	ENST00000265026	NM_004721.4	912	gCc/gTc																																																																														
BCL6	604	MSKCC	GRCh37	3	187443345	187443345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	127	404	2	ENST00000232014.4:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000232014	NM_001130845.1	594	cGa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189582168	189582168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908835		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	100	426	0	ENST00000264731.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000264731	NM_003722.4	243	Cgg/Tgg																																																																														
TP63	8626	MSKCC	GRCh37	3	189612250	189612250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749906547		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	120	381	0	ENST00000264731.3:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000264731	NM_003722.4	668	Cgc/Tgc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1905952	1905955	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	178	594	0	ENST00000382891.5:c.611_614del	p.Lys204SerfsTer14	p.K204Sfs*14	ENST00000382891	NM_133335.3	203	AAGAaa/aa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920289	1920289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146822227		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	210	676	0	ENST00000382891.5:c.1349G>A	p.Arg450Gln	p.R450Q	ENST00000382891	NM_133335.3	450	cGa/cAa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957776	1957776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	203	622	0	ENST00000382891.5:c.2742G>T	p.Glu914Asp	p.E914D	ENST00000382891	NM_133335.3	914	gaG/gaT																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144558	55144558	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	106	339	0	ENST00000257290.5:c.2032T>G	p.Phe678Val	p.F678V	ENST00000257290	NM_006206.4	678	Ttc/Gtc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151604	55151604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	130	558	0	ENST00000257290.5:c.2390G>A	p.Ser797Asn	p.S797N	ENST00000257290	NM_006206.4	797	aGc/aAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55602916	55602916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372795544		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	85	380	0	ENST00000288135.5:c.2626G>A	p.Asp876Asn	p.D876N	ENST00000288135	NM_000222.2	876	Gat/Aat																																																																														
KDR	3791	MSKCC	GRCh37	4	55968609	55968609	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	165	687	0	ENST00000263923.4:c.2054A>G	p.Glu685Gly	p.E685G	ENST00000263923	NM_002253.2	685	gAa/gGa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374980446		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	97	684	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55981531	55981531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35636987		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	81	353	0	ENST00000263923.4:c.406G>A	p.Val136Met	p.V136M	ENST00000263923	NM_002253.2	136	Gtg/Atg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197757	66197757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	100	408	0	ENST00000273854.3:c.2942G>T	p.Arg981Leu	p.R981L	ENST00000273854	NM_004439.5	981	cGg/cTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286284	66286284	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	50	233	0	ENST00000273854.3:c.1403-1G>T		p.X468_splice	ENST00000273854	NM_004439.5	468																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66361152	66361152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	83	316	1	ENST00000273854.3:c.1020G>T	p.Lys340Asn	p.K340N	ENST00000273854	NM_004439.5	340	aaG/aaT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467589	66467589	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772693559		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	41	336	0	ENST00000273854.3:c.680G>A	p.Arg227His	p.R227H	ENST00000273854	NM_004439.5	227	cGt/cAt																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99808233	99808233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	160	576	0	ENST00000280892.6:c.456G>T	p.Glu152Asp	p.E152D	ENST00000280892	NM_001130678.1	152	gaG/gaT																																																																														
TET2	54790	MSKCC	GRCh37	4	106155933	106155933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	73	262	2	ENST00000380013.4:c.834G>T	p.Gln278His	p.Q278H	ENST00000380013	NM_001127208.2	278	caG/caT																																																																														
TET2	54790	MSKCC	GRCh37	4	106156823	106156823	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199640757		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	136	496	3	ENST00000380013.4:c.1724C>T	p.Ala575Val	p.A575V	ENST00000380013	NM_001127208.2	575	gCg/gTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106193974	106193974	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	98	258	0	ENST00000380013.4:c.4436T>G	p.Leu1479Arg	p.L1479R	ENST00000380013	NM_001127208.2	1479	cTt/cGt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003184	143003184	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	87	309	0	ENST00000262992.4:c.2642G>T	p.Arg881Ile	p.R881I	ENST00000262992	NM_001101669.1	881	aGa/aTa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143094807	143094807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	40	281	0	ENST00000262992.4:c.1337C>A	p.Ser446Tyr	p.S446Y	ENST00000262992	NM_001101669.1	446	tCt/tAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250822	153250822	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	95	360	0	ENST00000281708.4:c.1236+2T>C		p.X412_splice	ENST00000281708	NM_033632.3	412																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259064	153259064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	41	158	0	ENST00000281708.4:c.751C>A	p.Leu251Ile	p.L251I	ENST00000281708	NM_033632.3	251	Ctt/Att																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521150	187521150	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768613095		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	135	529	1	ENST00000441802.2:c.12005C>T	p.Ser4002Leu	p.S4002L	ENST00000441802	NM_005245.3	4002	tCg/tTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530978	187530978	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376075512		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	134	409	0	ENST00000441802.2:c.10045G>A	p.Val3349Ile	p.V3349I	ENST00000441802	NM_005245.3	3349	Gtt/Att																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535426	187535426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370628880		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	107	421	1	ENST00000441802.2:c.9148G>A	p.Ala3050Thr	p.A3050T	ENST00000441802	NM_005245.3	3050	Gca/Aca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540841	187540841	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761083769		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	81	295	1	ENST00000441802.2:c.6899C>T	p.Thr2300Met	p.T2300M	ENST00000441802	NM_005245.3	2300	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627849	187627849	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	195	648	0	ENST00000441802.2:c.3133G>T	p.Glu1045Ter	p.E1045*	ENST00000441802	NM_005245.3	1045	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628125	187628125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1196972484		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	230	631	0	ENST00000441802.2:c.2857G>A	p.Asp953Asn	p.D953N	ENST00000441802	NM_005245.3	953	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628196	187628196	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs937707929		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	151	630	1	ENST00000441802.2:c.2786C>A	p.Pro929Gln	p.P929Q	ENST00000441802	NM_005245.3	929	cCa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628340	187628340	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs536104649		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	203	661	1	ENST00000441802.2:c.2642G>A	p.Arg881His	p.R881H	ENST00000441802	NM_005245.3	881	cGc/cAc																																																																														
SDHA	6389	MSKCC	GRCh37	5	225663	225663	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375576259		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	231	925	1	ENST00000264932.6:c.442G>A	p.Ala148Thr	p.A148T	ENST00000264932	NM_004168.2	148	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1293545	1293545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	219	889	2	ENST00000310581.5:c.1456C>A	p.Arg486Ser	p.R486S	ENST00000310581	NM_198253.2	486	Cgc/Agc																																																																														
TERT	7015	MSKCC	GRCh37	5	1293871	1293871	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756954938		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	229	917	2	ENST00000310581.5:c.1130G>A	p.Arg377His	p.R377H	ENST00000310581	NM_198253.2	377	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294613	1294613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1389956132		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	56	394	1	ENST00000310581.5:c.388G>A	p.Ala130Thr	p.A130T	ENST00000310581	NM_198253.2	130	Gca/Aca																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31421380	31421380	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	80	308	0	ENST00000344624.3:c.3524C>T	p.Thr1175Ile	p.T1175I	ENST00000344624		1175	aCt/aTt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31483667	31483667	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	76	259	0	ENST00000344624.3:c.2065C>A	p.Leu689Ile	p.L689I	ENST00000344624		689	Ctt/Att																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38960032	38960032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	54	252	0	ENST00000357387.3:c.1900C>T	p.Leu634Phe	p.L634F	ENST00000357387	NM_152756.3	634	Ctc/Ttc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38975707	38975707	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	100	341	0	ENST00000357387.3:c.822-1G>T		p.X274_splice	ENST00000357387	NM_152756.3	274																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176987	56176987	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	54	266	0	ENST00000399503.3:c.2257G>T	p.Glu753Ter	p.E753*	ENST00000399503	NM_005921.1	753	Gaa/Taa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79968590	79968590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	127	391	0	ENST00000265081.6:c.940G>A	p.Ala314Thr	p.A314T	ENST00000265081	NM_002439.4	314	Gca/Aca																																																																														
MSH3	4437	MSKCC	GRCh37	5	80071522	80071522	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	65	263	0	ENST00000265081.6:c.2263G>T	p.Glu755Ter	p.E755*	ENST00000265081	NM_002439.4	755	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112174134	112174134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	65	343	0	ENST00000257430.4:c.2843C>A	p.Ser948Tyr	p.S948Y	ENST00000257430	NM_000038.5	948	tCt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112174674	112174674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	73	319	0	ENST00000257430.4:c.3383C>T	p.Ser1128Phe	p.S1128F	ENST00000257430	NM_000038.5	1128	tCt/tTt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	72	319	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112176411	112176411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	69	310	0	ENST00000257430.4:c.5120C>A	p.Ser1707Tyr	p.S1707Y	ENST00000257430	NM_000038.5	1707	tCt/tAt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495372	149495372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146614144		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	199	731	0	ENST00000261799.4:c.3275C>T	p.Ser1092Leu	p.S1092L	ENST00000261799	NM_002609.3	1092	tCg/tTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514342	149514342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	54	479	0	ENST00000261799.4:c.602C>A	p.Ser201Tyr	p.S201Y	ENST00000261799	NM_002609.3	201	tCt/tAt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520306	176520306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	156	650	0	ENST00000292408.4:c.1225C>A	p.Leu409Ile	p.L409I	ENST00000292408	NM_213647.1	409	Ctc/Atc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522394	176522394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	205	723	2	ENST00000292408.4:c.1583G>A	p.Gly528Asp	p.G528D	ENST00000292408	NM_213647.1	528	gGc/gAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638456	176638456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750354456		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	184	676	1	ENST00000439151.2:c.3056G>A	p.Arg1019His	p.R1019H	ENST00000439151	NM_022455.4	1019	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675287	176675287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	115	297	0	ENST00000439151.2:c.4603C>T	p.Arg1535Cys	p.R1535C	ENST00000439151	NM_022455.4	1535	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176678730	176678730	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	112	278	0	ENST00000439151.2:c.4642-1G>T		p.X1548_splice	ENST00000439151	NM_022455.4	1548																																																																															
NSD1	64324	MSKCC	GRCh37	5	176696750	176696750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	92	354	0	ENST00000439151.2:c.5451G>T	p.Glu1817Asp	p.E1817D	ENST00000439151	NM_022455.4	1817	gaG/gaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707797	176707797	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs886041219		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	132	379	0	ENST00000439151.2:c.5854C>T	p.Arg1952Trp	p.R1952W	ENST00000439151	NM_022455.4	1952	Cgg/Tgg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038451	180038451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370304760		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	153	729	1	ENST00000261937.6:c.3566G>A	p.Arg1189His	p.R1189H	ENST00000261937	NM_182925.4	1189	cGc/cAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043477	180043477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	150	575	1	ENST00000261937.6:c.3109G>T	p.Asp1037Tyr	p.D1037Y	ENST00000261937	NM_182925.4	1037	Gac/Tac																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048587	180048587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	158	800	1	ENST00000261937.6:c.1975C>T	p.Arg659Cys	p.R659C	ENST00000261937	NM_182925.4	659	Cgc/Tgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048713	180048713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1176988485		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	157	750	1	ENST00000261937.6:c.1849G>A	p.Ala617Thr	p.A617T	ENST00000261937	NM_182925.4	617	Gcc/Acc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052918	180052918	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	194	953	0	ENST00000261937.6:c.1372T>C	p.Trp458Arg	p.W458R	ENST00000261937	NM_182925.4	458	Tgg/Cgg																																																																														
IRF4	3662	MSKCC	GRCh37	6	405045	405045	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377483798		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	141	429	1	ENST00000380956.4:c.1127G>A	p.Arg376His	p.R376H	ENST00000380956	NM_001195286.1	376	cGc/cAc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481463	20481463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	73	261	0	ENST00000346618.3:c.532C>T	p.Arg178Trp	p.R178W	ENST00000346618	NM_001949.4	178	Cgg/Tgg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910556	29910556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	219	891	0	ENST00000376809.5:c.96C>A	p.Phe32Leu	p.F32L	ENST00000376809	NM_002116.7	32	ttC/ttA																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681924	30681924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754781804		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	39	441	0	ENST00000376406.3:c.173G>A	p.Arg58Gln	p.R58Q	ENST00000376406	NM_014641.2	58	cGa/cAa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30682905	30682905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	153	413	0	ENST00000376406.3:c.48G>T	p.Glu16Asp	p.E16D	ENST00000376406	NM_014641.2	16	gaG/gaT																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322412	31322412	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	103	457	0	ENST00000412585.2:c.1043C>T	p.Ala348Val	p.A348V	ENST00000412585	NM_005514.6	348	gCg/gTg																																																																														
STK19	8859	MSKCC	GRCh37	6	31946679	31946679	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	133	478	0	ENST00000375331.2:c.568-1G>T		p.X190_splice	ENST00000375331	NM_004197.1	190																																																																															
STK19	8859	MSKCC	GRCh37	6	31948503	31948503	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767624789		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	98	394	1	ENST00000375331.2:c.974G>A	p.Arg325Gln	p.R325Q	ENST00000375331	NM_004197.1	325	cGg/cAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166874	32166874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	123	885	0	ENST00000375023.3:c.4364C>T	p.Ala1455Val	p.A1455V	ENST00000375023	NM_004557.3	1455	gCc/gTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180265	32180265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	128	527	0	ENST00000375023.3:c.2666C>T	p.Ala889Val	p.A889V	ENST00000375023	NM_004557.3	889	gCt/gTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185819	32185819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145916093		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	101	672	0	ENST00000375023.3:c.1577C>T	p.Ala526Val	p.A526V	ENST00000375023	NM_004557.3	526	gCg/gTg																																																																														
CCND3	896	MSKCC	GRCh37	6	41904434	41904434	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	143	534	0	ENST00000372991.4:c.575-1G>T		p.X192_splice	ENST00000372991	NM_001760.3	192																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94067982	94067982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	23	223	0	ENST00000369303.4:c.980C>T	p.Ala327Val	p.A327V	ENST00000369303	NM_004440.3	327	gCg/gTg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553357	106553357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	99	487	1	ENST00000369096.4:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000369096	NM_001198.3	441	cCg/cTg																																																																														
SESN1	27244	MSKCC	GRCh37	6	109322688	109322688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	31	339	0	ENST00000436639.2:c.349C>A	p.Leu117Ile	p.L117I	ENST00000436639	NM_014454.2	117	Ctc/Atc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631356	117631356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	117	344	1	ENST00000368508.3:c.6322G>T	p.Asp2108Tyr	p.D2108Y	ENST00000368508	NM_002944.2	2108	Gac/Tac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683840	117683840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	122	419	0	ENST00000368508.3:c.3307G>A	p.Ala1103Thr	p.A1103T	ENST00000368508	NM_002944.2	1103	Gct/Act																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686254	117686254	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	61	289	0	ENST00000368508.3:c.3087A>C	p.Lys1029Asn	p.K1029N	ENST00000368508	NM_002944.2	1029	aaA/aaC																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704658	117704658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	71	249	0	ENST00000368508.3:c.2318C>A	p.Ser773Tyr	p.S773Y	ENST00000368508	NM_002944.2	773	tCt/tAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708061	117708061	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	97	366	0	ENST00000368508.3:c.2116A>C	p.Asn706His	p.N706H	ENST00000368508	NM_002944.2	706	Aat/Cat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710904	117710904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	114	366	0	ENST00000368508.3:c.1368G>T	p.Lys456Asn	p.K456N	ENST00000368508	NM_002944.2	456	aaG/aaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715868	117715868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	87	327	0	ENST00000368508.3:c.890G>T	p.Arg297Ile	p.R297I	ENST00000368508	NM_002944.2	297	aGa/aTa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202424	138202424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	164	672	1	ENST00000237289.4:c.2341G>A	p.Glu781Lys	p.E781K	ENST00000237289	NM_001270507.1	781	Gaa/Aaa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163802	152163802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	147	449	0	ENST00000206249.3:c.523G>A	p.Ala175Thr	p.A175T	ENST00000206249	NM_000125.3	175	Gct/Act																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157222566	157222566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	174	578	0	ENST00000346085.5:c.1833G>T	p.Gln611His	p.Q611H	ENST00000346085	NM_020732.3	611	caG/caT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157520001	157520001	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773119970		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	176	604	0	ENST00000346085.5:c.4070C>T	p.Pro1357Leu	p.P1357L	ENST00000346085	NM_020732.3	1357	cCg/cTg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13978755	13978756	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	146	475	1	ENST00000405192.2:c.351_352delinsTA	p.Leu118Met	p.L118M	ENST00000405192	NM_001163147.1	117	tgCCtg/tgTAtg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729320	41729320	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	163	454	0	ENST00000242208.4:c.1209C>A	p.Tyr403Ter	p.Y403*	ENST00000242208	NM_002192.2	403	taC/taA																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730009	41730009	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758496316		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	175	582	0	ENST00000242208.4:c.520C>T	p.Arg174Cys	p.R174C	ENST00000242208	NM_002192.2	174	Cgc/Tgc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739644	41739644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	82	570	0	ENST00000242208.4:c.329G>T	p.Arg110Met	p.R110M	ENST00000242208	NM_002192.2	110	aGg/aTg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444317	50444317	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	91	363	0	ENST00000331340.3:c.247C>T	p.Arg83Ter	p.R83*	ENST00000331340	NM_006060.4	83	Cga/Tga																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467829	50467829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	118	549	0	ENST00000331340.3:c.1064C>T	p.Ala355Val	p.A355V	ENST00000331340	NM_006060.4	355	gCg/gTg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468282	50468282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	206	544	0	ENST00000331340.3:c.1517C>T	p.Ser506Leu	p.S506L	ENST00000331340	NM_006060.4	506	tCg/tTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268009	55268009	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	89	518	2	ENST00000275493.2:c.2849G>T	p.Cys950Phe	p.C950F	ENST00000275493	NM_005228.3	950	tGc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55269022	55269022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	215	746	0	ENST00000275493.2:c.3088T>C	p.Ser1030Pro	p.S1030P	ENST00000275493	NM_005228.3	1030	Tca/Cca																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509953	106509953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	113	535	0	ENST00000359195.3:c.1947G>T	p.Glu649Asp	p.E649D	ENST00000359195	NM_002649.2	649	gaG/gaT																																																																														
MET	4233	MSKCC	GRCh37	7	116339865	116339865	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	80	410	1	ENST00000397752.3:c.727G>T	p.Asp243Tyr	p.D243Y	ENST00000397752	NM_000245.2	243	Gat/Tat																																																																														
MET	4233	MSKCC	GRCh37	7	116339981	116339981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	25	329	0	ENST00000397752.3:c.843C>A	p.Phe281Leu	p.F281L	ENST00000397752	NM_000245.2	281	ttC/ttA																																																																														
MET	4233	MSKCC	GRCh37	7	116340252	116340252	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773200558		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	25	227	1	ENST00000397752.3:c.1114G>A	p.Asp372Asn	p.D372N	ENST00000397752	NM_000245.2	372	Gac/Aac																																																																														
SMO	6608	MSKCC	GRCh37	7	128829066	128829066	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs41304185		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	18	16	1	ENST00000249373.3:c.74A>G	p.Asp25Gly	p.D25G	ENST00000249373	NM_005631.4	25	gAc/gGc																																																																														
SMO	6608	MSKCC	GRCh37	7	128843396	128843396	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61746143		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	143	623	2	ENST00000249373.3:c.503G>A	p.Arg168His	p.R168H	ENST00000249373	NM_005631.4	168	cGc/cAc																																																																														
SMO	6608	MSKCC	GRCh37	7	128846357	128846357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760560948		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	155	671	0	ENST00000249373.3:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000249373	NM_005631.4	398	cGa/cAa																																																																														
SMO	6608	MSKCC	GRCh37	7	128849189	128849189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17710891		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	168	609	1	ENST00000249373.3:c.1417G>A	p.Asp473Asn	p.D473N	ENST00000249373	NM_005631.4	473	Gac/Aac																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523717	148523717	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	62	187	0	ENST00000320356.2:c.736G>T	p.Glu246Ter	p.E246*	ENST00000320356	NM_004456.4	246	Gaa/Taa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525883	148525883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778968366		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	23	350	0	ENST00000320356.2:c.574G>A	p.Asp192Asn	p.D192N	ENST00000320356	NM_004456.4	192	Gat/Aat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012410	152012410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	83	263	0	ENST00000262189.6:c.403G>A	p.Ala135Thr	p.A135T	ENST00000262189	NM_170606.2	135	Gct/Act																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132713	152132713	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	88	207	0	ENST00000262189.6:c.159G>T	p.Lys53Asn	p.K53N	ENST00000262189	NM_170606.2	53	aaG/aaT																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162263	38162263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	96	333	0	ENST00000317025.8:c.2453G>A	p.Arg818Lys	p.R818K	ENST00000317025	NM_023034.1	818	aGa/aAa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38189097	38189097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775871355		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	108	428	0	ENST00000317025.8:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000317025	NM_023034.1	306	cGa/cAa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205221	38205221	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	65	835	0	ENST00000317025.8:c.469del	p.Ile157Ter	p.I157*	ENST00000317025	NM_023034.1	157	Ata/ta																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38272409	38272409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	69	393	0	ENST00000425967.3:c.1958G>A	p.Arg653Gln	p.R653Q	ENST00000425967	NM_001174067.1	653	cGa/cAa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274879	38274879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	309	558	0	ENST00000425967.3:c.1701G>T	p.Lys567Asn	p.K567N	ENST00000425967	NM_001174067.1	567	aaG/aaT																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38277050	38277050	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	154	409	0	ENST00000425967.3:c.1377+1G>A		p.X459_splice	ENST00000425967	NM_001174067.1	459																																																																															
PREX2	80243	MSKCC	GRCh37	8	68931826	68931826	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs759461290		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	124	563	1	ENST00000288368.4:c.256G>T	p.Glu86Ter	p.E86*	ENST00000288368	NM_024870.2	86	Gaa/Taa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021767	69021767	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	164	490	1	ENST00000288368.4:c.3055G>T	p.Asp1019Tyr	p.D1019Y	ENST00000288368	NM_024870.2	1019	Gac/Tac																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104637	69104637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746308010		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	194	581	0	ENST00000288368.4:c.4481G>A	p.Arg1494His	p.R1494H	ENST00000288368	NM_024870.2	1494	cGc/cAc																																																																														
NBN	4683	MSKCC	GRCh37	8	90955513	90955513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	100	381	0	ENST00000265433.3:c.2152G>A	p.Glu718Lys	p.E718K	ENST00000265433	NM_002485.4	718	Gaa/Aaa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859844	117859844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	61	257	0	ENST00000297338.2:c.1791C>A	p.Phe597Leu	p.F597L	ENST00000297338	NM_006265.2	597	ttC/ttA																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868450	117868450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148308569		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	100	486	0	ENST00000297338.2:c.892C>T	p.Pro298Ser	p.P298S	ENST00000297338	NM_006265.2	298	Cca/Tca																																																																														
MYC	4609	MSKCC	GRCh37	8	128751056	128751056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	237	538	0	ENST00000377970.2:c.593C>T	p.Ala198Val	p.A198V	ENST00000377970	NM_002467.4	198	gCc/gTc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542594	141542594	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	322	645	0	ENST00000220592.5:c.2392T>C	p.Ser798Pro	p.S798P	ENST00000220592	NM_012154.3	798	Tcc/Ccc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141570541	141570541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	412	791	1	ENST00000220592.5:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000220592	NM_012154.3	196	cGa/cAa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738499	145738499	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375250269		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	152	674	1	ENST00000428558.2:c.2486G>A	p.Arg829His	p.R829H	ENST00000428558	NM_004260.3	829	cGc/cAc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054797	5054797	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs762791853		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	81	347	0	ENST00000381652.3:c.849G>T	p.Glu283Asp	p.E283D	ENST00000381652	NM_004972.3	283	gaG/gaT																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072579	5072579	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	79	379	0	ENST00000381652.3:c.1729G>T	p.Glu577Ter	p.E577*	ENST00000381652	NM_004972.3	577	Gaa/Taa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5089679	5089679	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	69	211	0	ENST00000381652.3:c.2580del	p.Phe860LeufsTer22	p.F860Lfs*22	ENST00000381652	NM_004972.3	859	aaT/aa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504333	8504333	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754609275		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	155	490	1	ENST00000356435.5:c.1750C>T	p.Arg584Cys	p.R584C	ENST00000356435		584	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517848	8517848	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	82	255	0	ENST00000356435.5:c.1543G>T	p.Val515Leu	p.V515L	ENST00000356435		515	Gta/Tta																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524966	8524966	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764474694		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	51	327	1	ENST00000356435.5:c.638C>T	p.Ala213Val	p.A213V	ENST00000356435		213	gCg/gTg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020738	37020738	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs564013593		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	128	554	0	ENST00000358127.4:c.107T>C	p.Val36Ala	p.V36A	ENST00000358127	NM_001280556.1	36	gTa/gCa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342807	87342807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	104	406	1	ENST00000277120.3:c.1092G>T	p.Lys364Asn	p.K364N	ENST00000277120		364	aaG/aaT																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87359914	87359914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748744999		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	115	337	0	ENST00000277120.3:c.1222G>A	p.Gly408Arg	p.G408R	ENST00000277120		408	Ggg/Agg																																																																														
FANCC	2176	MSKCC	GRCh37	9	97933362	97933362	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs781542763		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	59	328	0	ENST00000289081.3:c.520C>T	p.Arg174Ter	p.R174*	ENST00000289081	NM_000136.2	174	Cga/Tga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98212182	98212182	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371346118		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	124	350	0	ENST00000331920.6:c.3490G>A	p.Val1164Ile	p.V1164I	ENST00000331920	NM_000264.3	1164	Gtt/Att																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98224149	98224149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531947455		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	79	226	0	ENST00000331920.6:c.2692G>A	p.Asp898Asn	p.D898N	ENST00000331920	NM_000264.3	898	Gac/Aac																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900171	101900171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	64	281	0	ENST00000374994.4:c.605C>T	p.Ala202Val	p.A202V	ENST00000374994	NM_004612.2	202	gCg/gTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760960	133760960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750196179		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	199	769	1	ENST00000318560.5:c.3283C>T	p.Arg1095Trp	p.R1095W	ENST00000318560	NM_005157.4	1095	Cgg/Tgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399348	139399348	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543770603		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	250	839	0	ENST00000277541.6:c.4795G>A	p.Val1599Met	p.V1599M	ENST00000277541	NM_017617.3	1599	Gtg/Atg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412336	139412336	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060502238		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	221	773	0	ENST00000277541.6:c.1309G>A	p.Glu437Lys	p.E437K	ENST00000277541	NM_017617.3	437	Gag/Aag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922019	39922019	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs577082253		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	58	633	1	ENST00000378444.4:c.4153G>A	p.Val1385Met	p.V1385M	ENST00000378444	NM_001123385.1	1385	Gtg/Atg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923826	39923826	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1381312357		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	185	682	0	ENST00000378444.4:c.3265C>T	p.Arg1089Cys	p.R1089C	ENST00000378444	NM_001123385.1	1089	Cgt/Tgt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945153	44945153	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	130	482	0	ENST00000377967.4:c.3477T>G	p.Ile1159Met	p.I1159M	ENST00000377967	NM_021140.2	1159	atT/atG																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53231039	53231039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	107	518	1	ENST00000375401.3:c.1863C>A	p.Asp621Glu	p.D621E	ENST00000375401	NM_004187.3	621	gaC/gaA																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247506	53247506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	152	625	0	ENST00000375401.3:c.303G>T	p.Lys101Asn	p.K101N	ENST00000375401	NM_004187.3	101	aaG/aaT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410400	63410400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	82	712	0	ENST00000330258.3:c.2767G>A	p.Ala923Thr	p.A923T	ENST00000330258	NM_152424.3	923	Gcc/Acc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410458	63410458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	132	645	0	ENST00000330258.3:c.2709G>T	p.Glu903Asp	p.E903D	ENST00000330258	NM_152424.3	903	gaG/gaT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412452	63412452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	194	913	0	ENST00000330258.3:c.715G>A	p.Val239Ile	p.V239I	ENST00000330258	NM_152424.3	239	Gtt/Att																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413103	63413103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	177	767	1	ENST00000330258.3:c.64G>A	p.Glu22Lys	p.E22K	ENST00000330258	NM_152424.3	22	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70340886	70340886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	69	651	0	ENST00000374080.3:c.619C>T	p.Pro207Ser	p.P207S	ENST00000374080		207	Cca/Tca																																																																														
MED12	9968	MSKCC	GRCh37	X	70345240	70345240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	180	644	1	ENST00000374080.3:c.2266G>A	p.Val756Ile	p.V756I	ENST00000374080		756	Gta/Ata																																																																														
ATRX	546	MSKCC	GRCh37	X	76813089	76813089	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057517707		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	114	459	0	ENST00000373344.5:c.6532C>T	p.Arg2178Trp	p.R2178W	ENST00000373344	NM_000489.3	2178	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76855994	76855994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	91	447	0	ENST00000373344.5:c.5606G>A	p.Gly1869Asp	p.G1869D	ENST00000373344	NM_000489.3	1869	gGt/gAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76889188	76889188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	66	358	0	ENST00000373344.5:c.4822C>A	p.Leu1608Ile	p.L1608I	ENST00000373344	NM_000489.3	1608	Ctt/Att																																																																														
ATRX	546	MSKCC	GRCh37	X	76931767	76931767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	89	428	0	ENST00000373344.5:c.3763C>T	p.Pro1255Ser	p.P1255S	ENST00000373344	NM_000489.3	1255	Cct/Tct																																																																														
ATRX	546	MSKCC	GRCh37	X	76938570	76938570	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	90	476	0	ENST00000373344.5:c.2178T>A	p.Asp726Glu	p.D726E	ENST00000373344	NM_000489.3	726	gaT/gaA																																																																														
ATRX	546	MSKCC	GRCh37	X	76953097	76953097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	97	474	0	ENST00000373344.5:c.216G>T	p.Lys72Asn	p.K72N	ENST00000373344	NM_000489.3	72	aaG/aaT																																																																														
XIAP	331	MSKCC	GRCh37	X	123020177	123020177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1162866133		P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	183	680	2	ENST00000355640.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000355640		222	cGa/cAa																																																																														
XIAP	331	MSKCC	GRCh37	X	123034431	123034431	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	87	420	0	ENST00000355640.3:c.1188A>T	p.Lys396Asn	p.K396N	ENST00000355640		396	aaA/aaT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197708	123197708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	57	366	0	ENST00000218089.9:c.1832C>T	p.Ala611Val	p.A611V	ENST00000218089	NM_001042749.1	611	gCc/gTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205173	123205173	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	53	288	0	ENST00000218089.9:c.2533G>T	p.Asp845Tyr	p.D845Y	ENST00000218089	NM_001042749.1	845	Gat/Tat																																																																														
STAG2	10735	MSKCC	GRCh37	X	123210233	123210233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	113	491	1	ENST00000218089.9:c.2585G>T	p.Arg862Ile	p.R862I	ENST00000218089	NM_001042749.1	862	aGa/aTa																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480499	123480499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	95	448	0	ENST00000371139.4:c.7G>A	p.Ala3Thr	p.A3T	ENST00000371139	NM_001114937.2	3	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0043924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	211	542	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0043924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	40	224	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	14	528	0	ENST00000263967.3:c.1638G>C	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caC																																																																														
BARD1	580	MSKCC	GRCh37	2	215674274	215674274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	34	521	2	ENST00000260947.4:c.20C>T	p.Pro7Leu	p.P7L	ENST00000260947	NM_000465.2	7	cCg/cTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46254734	46254734	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0043924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	72	232	0	ENST00000334344.6:c.4922+2T>A		p.X1641_splice	ENST00000334344	NM_152641.2	1641																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5243957	5243957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1324477953		P-0043924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	208	525	1	ENST00000357368.4:c.1525G>A	p.Asp509Asn	p.D509N	ENST00000357368	NM_002850.3	509	Gac/Aac																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986548	36986549	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	43	626	0	ENST00000354822.5:c.1140dup	p.Asn381GlufsTer58	p.N381Efs*58	ENST00000354822	NM_001079668.2	380	-/G																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	103	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0043928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	29	324	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934573		P-0043928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	80	603	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511205	148511205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	34	416	0	ENST00000320356.2:c.1697G>A	p.Arg566His	p.R566H	ENST00000320356	NM_004456.4	566	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	52	340	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0043932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	111	688	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528621	89528621	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780470195		P-0043932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	31	195	0	ENST00000336596.2:c.2921C>T	p.Thr974Met	p.T974M	ENST00000336596	NM_005233.5	974	aCg/aTg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998568	100998568	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759171409		P-0043932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	75	593	1	ENST00000325455.5:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000325455	NM_001202474.3	412	Gca/Aca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118382704	118382704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	52	292	0	ENST00000534358.1:c.11110C>T	p.Arg3704Ter	p.R3704*	ENST00000534358	NM_005933.3	3704	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691826	30691826	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	66	394	0	ENST00000359013.4:c.403G>C	p.Asp135His	p.D135H	ENST00000359013	NM_001024847.2	135	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	435	544	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	110	289	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714370	40714370	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs956451753		P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	204	386	0	ENST00000373198.4:c.4027C>T	p.Arg1343Trp	p.R1343W	ENST00000373198	NM_133170.3	1343	Cgg/Tgg																																																																														
TP63	8626	MSKCC	GRCh37	3	189612212	189612212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764601563		P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	267	454	0	ENST00000264731.3:c.1964G>A	p.Arg655Gln	p.R655Q	ENST00000264731	NM_003722.4	655	cGa/cAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920430	114920430	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	287	457	0	ENST00000543371.1:c.1373del	p.Leu458TyrfsTer33	p.L458Yfs*33	ENST00000543371	NM_001198531.1	457	acT/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	146	339	0	ENST00000256078.4:c.38_39delinsAT	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGC/gAT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2978405	2978405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370704955		P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	126	645	0	ENST00000396946.4:c.925C>T	p.Arg309Cys	p.R309C	ENST00000396946	NM_032415.4	309	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	29	176	0	ENST00000257430.4:c.3925del	p.Glu1309LysfsTer12	p.E1309Kfs*12	ENST00000257430	NM_000038.5	1309	Gaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0043950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	350	547	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
GPS2	2874	MSKCC	GRCh37	17	7217688	7217688	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	88	448	0	ENST00000380728.2:c.239del	p.Gln80ArgfsTer29	p.Q80Rfs*29	ENST00000380728		80	cAg/cg																																																																														
APC	324	MSKCC	GRCh37	5	112179385	112179385	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	83	404	0	ENST00000257430.4:c.8094A>T	p.Lys2698Asn	p.K2698N	ENST00000257430	NM_000038.5	2698	aaA/aaT																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577513	64577513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	207	447	0	ENST00000337652.1:c.69del	p.Phe23LeufsTer96	p.F23Lfs*96	ENST00000337652	NM_130803.2	23	ttT/tt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519729		P-0044025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	441	397	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs876660548		P-0044025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	552	692	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903747	114903747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	283	443	1	ENST00000543371.1:c.751G>A	p.Gly251Arg	p.G251R	ENST00000543371	NM_001198531.1	251	Gga/Aga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127760	64127760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	463	624	0	ENST00000334205.4:c.253G>A	p.Glu85Lys	p.E85K	ENST00000334205	NM_003942.2	85	Gag/Aag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724420	43724420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	121	607	0	ENST00000382044.4:c.3647G>T	p.Gly1216Val	p.G1216V	ENST00000382044	NM_001141980.1	1216	gGg/gTg																																																																														
ALK	238	MSKCC	GRCh37	2	29451872	29451872	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	216	671	0	ENST00000389048.3:c.2693A>T	p.Glu898Val	p.E898V	ENST00000389048	NM_004304.4	898	gAg/gTg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32171642	32171643	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CACCTCA			P-0044025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	234	510	0	ENST00000375023.3:c.3129_3135dup	p.Glu1046Ter	p.E1046*	ENST00000375023	NM_004557.3	1045	-/TGAGGTG																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0044029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	172	715	0	ENST00000337652.1:c.249_252del	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245235	46245235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753485118		P-0044029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	61	456	0	ENST00000334344.6:c.3329G>A	p.Gly1110Glu	p.G1110E	ENST00000334344	NM_152641.2	1110	gGa/gAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164127	47164127	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	53	267	1	ENST00000409792.3:c.1999del	p.Cys667ValfsTer3	p.C667Vfs*3	ENST00000409792	NM_014159.6	667	Tgt/gt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	118	348	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	106	228	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057520006		P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	515	603	0	ENST00000269305.4:c.821T>A	p.Val274Asp	p.V274D	ENST00000269305	NM_001126112.2	274	gTt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	56	171	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
TP63	8626	MSKCC	GRCh37	3	189455576	189455576	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754361670		P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	54	412	0	ENST00000264731.3:c.110G>A	p.Arg37Gln	p.R37Q	ENST00000264731	NM_003722.4	37	cGa/cAa																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22153365	22153365	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	100	373	0	ENST00000215832.6:c.545G>C	p.Gly182Ala	p.G182A	ENST00000215832	NM_002745.4	182	gGg/gCg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38282046	38282046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	330	579	0	ENST00000425967.3:c.1010C>A	p.Pro337His	p.P337H	ENST00000425967	NM_001174067.1	337	cCt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0044051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	393	507	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131977884	131977884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786203127		P-0044051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	82	223	0	ENST00000265335.6:c.3767G>A	p.Arg1256His	p.R1256H	ENST00000265335		1256	cGc/cAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127640	64127640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	133	488	0	ENST00000334205.4:c.133G>A	p.Gly45Ser	p.G45S	ENST00000334205	NM_003942.2	45	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	471	529	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48923024	48923118	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATCTGGAAAACTTTCTTTCAGTGATACATTTTTCCTGTTTTTTTTCTGCTTTCTATTTGTTTAATAGGATATCTACTGAAATAAATTCTGCATT	TATCTGGAAAACTTTCTTTCAGTGATACATTTTTCCTGTTTTTTTTCTGCTTTCTATTTGTTTAATAGGATATCTACTGAAATAAATTCTGCATT	-			P-0044053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	32	93	0	ENST00000267163.4:c.540-68_566del		p.X180_splice	ENST00000267163	NM_000321.2	180																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66535339	66535339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	236	426	0	ENST00000273854.3:c.122G>T	p.Trp41Leu	p.W41L	ENST00000273854	NM_004439.5	41	tGg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0044056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	331	621	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27058083	27058083	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	201	362	0	ENST00000324856.7:c.1793del	p.Pro598LeufsTer21	p.P598Lfs*21	ENST00000324856	NM_006015.4	597	ttC/tt																																																																														
RB1	5925	MSKCC	GRCh37	13	49027153	49027153	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	73	372	0	ENST00000267163.4:c.1720A>T	p.Lys574Ter	p.K574*	ENST00000267163	NM_000321.2	574	Aaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247199	153247199	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	48	360	0	ENST00000281708.4:c.1603C>G	p.His535Asp	p.H535D	ENST00000281708	NM_033632.3	535	Cac/Gac																																																																														
XIAP	331	MSKCC	GRCh37	X	123020155	123020155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	68	614	2	ENST00000355640.3:c.643C>A	p.Arg215Ser	p.R215S	ENST00000355640		215	Cgt/Agt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21553889	21553889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	50	470	0	ENST00000382592.4:c.2713G>A	p.Glu905Lys	p.E905K	ENST00000382592	NM_014572.2	905	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579445	7579446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	354	640	0	ENST00000269305.4:c.241dup	p.Thr81AsnfsTer68	p.T81Nfs*68	ENST00000269305	NM_001126112.2	81	aca/aAca																																																																														
IRF4	3662	MSKCC	GRCh37	6	394890	394890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1459743512		P-0044084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	397	456	0	ENST00000380956.4:c.286C>T	p.Arg96Cys	p.R96C	ENST00000380956	NM_001195286.1	96	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	197	227	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	48947542	48947561	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ACTGTTATGAACACTATCCA	ACTGTTATGAACACTATCCA	-			P-0044084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	128	380	0	ENST00000267163.4:c.1131_1150del	p.Val378IlefsTer10	p.V378Ifs*10	ENST00000267163	NM_000321.2	377	ACTGTTATGAACACTATCCAa/a																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190867	185190867	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs765143232		P-0044084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	464	617	0	ENST00000265026.3:c.1748G>A	p.Arg583Gln	p.R583Q	ENST00000265026	NM_004721.4	583	cGa/cAa																																																																														
PAX5	5079	MSKCC	GRCh37	9	36846847	36846847	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	40	403	0	ENST00000358127.4:c.1092del	p.Leu365CysfsTer38	p.L365Cfs*38	ENST00000358127	NM_001280556.1	364	ggG/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0044141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	16	391	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	78	825	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0044141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	16	157	0	ENST00000257430.4:c.3807_3808del	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105967	27105967	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	44	493	0	ENST00000324856.7:c.5578G>T	p.Glu1860Ter	p.E1860*	ENST00000324856	NM_006015.4	1860	Gag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224157	36224157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	85	655	0	ENST00000222270.7:c.6707C>A	p.Pro2236Gln	p.P2236Q	ENST00000222270	NM_014727.1	2236	cCa/cAa																																																																														
MET	4233	MSKCC	GRCh37	7	116371734	116371734	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	25	297	0	ENST00000397752.3:c.1213A>G	p.Asn405Asp	p.N405D	ENST00000397752	NM_000245.2	405	Aat/Gat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	380	1056	2	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123324058	123324058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs938460066		P-0044166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	86	574	1	ENST00000358487.5:c.412G>A	p.Asp138Asn	p.D138N	ENST00000358487	NM_000141.4	138	Gat/Aat																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197163	26197163	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	79	494	0	ENST00000356476.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000356476		106	Gag/Cag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15935692	15935692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	60	426	0	ENST00000268712.3:c.7241A>G	p.His2414Arg	p.H2414R	ENST00000268712	NM_006311.3	2414	cAc/cGc																																																																														
AXL	558	MSKCC	GRCh37	19	41749580	41749580	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	79	911	0	ENST00000301178.4:c.1505A>C	p.Lys502Thr	p.K502T	ENST00000301178	NM_021913.4	502	aAg/aCg																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26046002	26046002	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs548956477		P-0044166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	97	362	0	ENST00000540144.1:c.364C>G	p.Pro122Ala	p.P122A	ENST00000540144	NM_003531.2	122	Ccc/Gcc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38194867	38194867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	91	603	0	ENST00000317025.8:c.866C>T	p.Ser289Leu	p.S289L	ENST00000317025	NM_023034.1	289	tCa/tTa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566386	141566386	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	44	306	0	ENST00000220592.5:c.1027-1G>A		p.X343_splice	ENST00000220592	NM_012154.3	343																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249983	110249983	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1433770087		P-0044166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	44	685	1	ENST00000374672.4:c.692T>G	p.Leu231Arg	p.L231R	ENST00000374672	NM_004235.4	231	cTg/cGg																																																																														
ABL1	25	MSKCC	GRCh37	9	133730404	133730404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	106	563	0	ENST00000318560.5:c.470G>T	p.Ser157Ile	p.S157I	ENST00000318560	NM_005157.4	157	aGt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	84	397	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	134	802	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0044171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	9	322	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912580		P-0044171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	37	330	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																														
RB1	5925	MSKCC	GRCh37	13	49030405	49030406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	80	364	0	ENST00000267163.4:c.1881dup	p.Ala628CysfsTer25	p.A628Cfs*25	ENST00000267163	NM_000321.2	627	aat/aaTt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027166	48027166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	50	414	0	ENST00000234420.5:c.2044T>C	p.Ser682Pro	p.S682P	ENST00000234420	NM_000179.2	682	Tct/Cct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	30	336	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	28	392	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	119	877	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	18	689	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	53	683	1	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88649922	88649922	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	52	504	0	ENST00000372037.3:c.176del	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	57	ccT/cc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	119	347	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692981	89692982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	60	483	0	ENST00000371953.3:c.469dup	p.Glu157GlyfsTer23	p.E157Gfs*23	ENST00000371953	NM_000314.4	155	-/G																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	55	746	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	30	470	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518112	8518112	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs533774328		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	36	467	1	ENST00000356435.5:c.1279C>T	p.Arg427Ter	p.R427*	ENST00000356435		427	Cga/Tga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	121	903	2	ENST00000261937.6:c.1267del	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932492	39932492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	125	858	2	ENST00000378444.4:c.2107C>T	p.Pro703Ser	p.P703S	ENST00000378444	NM_001123385.1	703	Ccc/Tcc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488225	56488225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	53	609	1	ENST00000267101.3:c.1744G>T	p.Gly582Trp	p.G582W	ENST00000267101	NM_001982.3	582	Ggg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29661945	29661945	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854552		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	47	494	1	ENST00000358273.4:c.5902C>T	p.Arg1968Ter	p.R1968*	ENST00000358273	NM_001042492.2	1968	Cga/Tga																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905873	50905873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756829126		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	94	887	0	ENST00000440232.2:c.845C>T	p.Thr282Met	p.T282M	ENST00000440232	NM_002691.3	282	aCg/aTg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	134	685	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs770248150		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	13	397	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																														
ALK	238	MSKCC	GRCh37	2	30142885	30142885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766999851		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	65	854	3	ENST00000389048.3:c.641G>A	p.Arg214His	p.R214H	ENST00000389048	NM_004304.4	214	cGc/cAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	53	591	1	ENST00000331920.6:c.290del	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099080	157099080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	18	137	0	ENST00000346085.5:c.17G>C	p.Gly6Ala	p.G6A	ENST00000346085	NM_020732.3	6	gGc/gCc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53250046	53250047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs782600511		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	92	654	0	ENST00000375401.3:c.202dup	p.Arg68ProfsTer7	p.R68Pfs*7	ENST00000375401	NM_004187.3	68	cga/cCga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366129	15366129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1468704458		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	48	547	1	ENST00000263377.2:c.2026C>T	p.Arg676Trp	p.R676W	ENST00000263377	NM_058243.2	676	Cgg/Tgg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98212182	98212182	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371346118		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	36	398	0	ENST00000331920.6:c.3490G>A	p.Val1164Ile	p.V1164I	ENST00000331920	NM_000264.3	1164	Gtt/Att																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342743	87342743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	41	497	0	ENST00000277120.3:c.1028A>G	p.His343Arg	p.H343R	ENST00000277120		343	cAc/cGc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572555	95572555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	22	227	0	ENST00000343455.3:c.2810G>A	p.Arg937His	p.R937H	ENST00000343455	NM_177438.2	937	cGc/cAc																																																																														
AR	367	MSKCC	GRCh37	X	66937403	66937403	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs886039558		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	52	650	0	ENST00000374690.3:c.2257C>T	p.Arg753Ter	p.R753*	ENST00000374690	NM_000044.3	753	Cga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48025857	48025857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1472949451		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	44	355	0	ENST00000234420.5:c.741del	p.Lys247AsnfsTer32	p.K247Nfs*32	ENST00000234420	NM_000179.2	245	atA/at																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	58	594	3	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1387	104	1121	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	128	627	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131403	17131403	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs758385503		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	66	783	0	ENST00000285071.4:c.49del	p.Arg17AlafsTer38	p.R17Afs*38	ENST00000285071	NM_144997.5	17	Cgc/gc																																																																														
NF1	4763	MSKCC	GRCh37	17	29661917	29661917	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	40	488	0	ENST00000358273.4:c.5878del	p.Cys1960AlafsTer19	p.C1960Afs*19	ENST00000358273	NM_001042492.2	1958	cgT/cg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11172947	11172947	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759011563		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	49	515	1	ENST00000361445.4:c.7328G>A	p.Arg2443Gln	p.R2443Q	ENST00000361445	NM_004958.3	2443	cGa/cAa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231449	5231449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	61	892	1	ENST00000357368.4:c.2027del	p.Pro676ArgfsTer134	p.P676Rfs*134	ENST00000357368	NM_002850.3	676	cCg/cg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845190	151845190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764910946		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	49	558	0	ENST00000262189.6:c.13822C>T	p.Arg4608Cys	p.R4608C	ENST00000262189	NM_170606.2	4608	Cgc/Tgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395216	139395216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	76	970	0	ENST00000277541.6:c.5722G>A	p.Ala1908Thr	p.A1908T	ENST00000277541	NM_017617.3	1908	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832793	3832793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	63	598	0	ENST00000262367.5:c.1465G>A	p.Gly489Arg	p.G489R	ENST00000262367	NM_004380.2	489	Gga/Aga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100171	27100171	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778051		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	47	583	0	ENST00000324856.7:c.3967C>T	p.Arg1323Cys	p.R1323C	ENST00000324856	NM_006015.4	1323	Cgc/Tgc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127670	64127670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	93	975	1	ENST00000334205.4:c.163G>A	p.Gly55Arg	p.G55R	ENST00000334205	NM_003942.2	55	Ggg/Agg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257665	16257665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	74	536	0	ENST00000375759.3:c.4930G>A	p.Val1644Ile	p.V1644I	ENST00000375759	NM_015001.2	1644	Gtc/Atc																																																																														
MPL	4352	MSKCC	GRCh37	1	43812526	43812526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	66	626	0	ENST00000372470.3:c.1229G>T	p.Trp410Leu	p.W410L	ENST00000372470	NM_005373.2	410	tGg/tTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70333092	70333092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	66	759	0	ENST00000373644.4:c.997G>T	p.Gly333Cys	p.G333C	ENST00000373644	NM_030625.2	333	Ggc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903715	114903715	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	59	625	0	ENST00000543371.1:c.722del	p.Pro241ArgfsTer10	p.P241Rfs*10	ENST00000543371	NM_001198531.1	240	tCc/tc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77043827	77043827	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752626713		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	83	727	2	ENST00000356341.3:c.1499G>A	p.Arg500His	p.R500H	ENST00000356341	NM_002576.4	500	cGc/cAc																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981819	101981820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	88	811	0	ENST00000282441.5:c.244dup	p.Gln82ProfsTer30	p.Q82Pfs*30	ENST00000282441	NM_001130145.2	80	-/C																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856145	111856145	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	65	398	0	ENST00000341259.2:c.196C>T	p.Gln66Ter	p.Q66*	ENST00000341259	NM_005475.2	66	Cag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133219169	133219169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	58	806	0	ENST00000320574.5:c.4875G>T	p.Gln1625His	p.Q1625H	ENST00000320574	NM_006231.2	1625	caG/caT																																																																														
FLT3	2322	MSKCC	GRCh37	13	28597587	28597588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	48	506	1	ENST00000241453.7:c.2317dup	p.Arg773LysfsTer14	p.R773Kfs*14	ENST00000241453	NM_004119.2	773	agg/aAgg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911213	32911213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	40	512	0	ENST00000380152.3:c.2721G>T	p.Lys907Asn	p.K907N	ENST00000380152		907	aaG/aaT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3823897	3823897	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1273214954		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	57	805	1	ENST00000262367.5:c.2318C>T	p.Pro773Leu	p.P773L	ENST00000262367	NM_004380.2	773	cCg/cTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274130	10274130	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	64	708	1	ENST00000330684.3:c.139A>T	p.Thr47Ser	p.T47S	ENST00000330684	NM_001134407.1	47	Aca/Tca																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663346	67663346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771793540		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	54	391	0	ENST00000264010.4:c.1747G>A	p.Val583Ile	p.V583I	ENST00000264010	NM_006565.3	583	Gta/Ata																																																																														
FANCA	2175	MSKCC	GRCh37	16	89865609	89865609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	52	569	1	ENST00000389301.3:c.858G>T	p.Gln286His	p.Q286H	ENST00000389301	NM_000135.2	286	caG/caT																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131295	17131295	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	87	967	1	ENST00000285071.4:c.157C>T	p.Gln53Ter	p.Q53*	ENST00000285071	NM_144997.5	53	Cag/Tag																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368295	45368295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	30	388	0	ENST00000262160.6:c.1307G>A	p.Cys436Tyr	p.C436Y	ENST00000262160	NM_005901.5	436	tGc/tAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288832	15288832	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	12	166	1	ENST00000263388.2:c.3907C>A	p.Pro1303Thr	p.P1303T	ENST00000263388	NM_000435.2	1303	Cca/Aca																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942172	17942172	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1462715334		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	83	706	1	ENST00000458235.1:c.2843G>A	p.Arg948His	p.R948H	ENST00000458235	NM_000215.3	948	cGc/cAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42799228	42799228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	62	781	0	ENST00000575354.2:c.4712C>T	p.Ala1571Val	p.A1571V	ENST00000575354	NM_015125.3	1571	gCt/gTt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467074	25467074	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	62	854	0	ENST00000264709.3:c.1801T>G	p.Trp601Gly	p.W601G	ENST00000264709	NM_175629.2	601	Tgg/Ggg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965820	25965820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	57	757	0	ENST00000435504.4:c.3386C>T	p.Ser1129Phe	p.S1129F	ENST00000435504		1129	tCt/tTt																																																																														
ALK	238	MSKCC	GRCh37	2	29543642	29543642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	65	739	0	ENST00000389048.3:c.1521G>T	p.Lys507Asn	p.K507N	ENST00000389048	NM_004304.4	507	aaG/aaT																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018201	48018202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	76	644	0	ENST00000234420.5:c.402dup	p.Asp135Ter	p.D135*	ENST00000234420	NM_000179.2	132	-/T																																																																														
PMS1	5378	MSKCC	GRCh37	2	190708718	190708718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	59	397	0	ENST00000441310.2:c.611C>T	p.Ser204Leu	p.S204L	ENST00000441310	NM_000534.4	204	tCa/tTa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022640	31022640	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868859861		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	58	701	0	ENST00000375687.4:c.2125G>A	p.Ala709Thr	p.A709T	ENST00000375687	NM_015338.5	709	Gcc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs749415085		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	28	386	0	ENST00000263967.3:c.112C>A	p.Arg38Ser	p.R38S	ENST00000263967	NM_006218.2	38	Cgt/Agt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1800992	1800992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1236	80	1059	0	ENST00000260795.2:c.121C>A	p.Pro41Thr	p.P41T	ENST00000260795		41	Cca/Aca																																																																														
WHSC1	0	MSKCC	GRCh37	4	1936967	1936967	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146509878		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	60	565	1	ENST00000382891.5:c.1652C>T	p.Thr551Met	p.T551M	ENST00000382891	NM_133335.3	551	aCg/aTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55946146	55946146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	37	361	0	ENST00000263923.4:c.4033C>A	p.Pro1345Thr	p.P1345T	ENST00000263923	NM_002253.2	1345	Cct/Act																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628392	187628392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	79	753	0	ENST00000441802.2:c.2590G>C	p.Asp864His	p.D864H	ENST00000441802	NM_005245.3	864	Gac/Cac																																																																														
SDHA	6389	MSKCC	GRCh37	5	235429	235429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	66	767	1	ENST00000264932.6:c.1235G>T	p.Gly412Val	p.G412V	ENST00000264932	NM_004168.2	412	gGc/gTc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046672	180046672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	109	947	0	ENST00000261937.6:c.2640G>A	p.Met880Ile	p.M880I	ENST00000261937	NM_182925.4	880	atG/atA																																																																														
MET	4233	MSKCC	GRCh37	7	116435839	116435839	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1390590380		P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	62	651	0	ENST00000397752.3:c.3929A>G	p.Asp1310Gly	p.D1310G	ENST00000397752	NM_000245.2	1310	gAc/gGc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760613	133760613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1320	86	1078	1	ENST00000318560.5:c.2936C>T	p.Ala979Val	p.A979V	ENST00000318560	NM_005157.4	979	gCc/gTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413157	139413157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1384	78	1006	0	ENST00000277541.6:c.985G>A	p.Gly329Ser	p.G329S	ENST00000277541	NM_017617.3	329	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0044224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	399	654	0	ENST00000269305.4:c.375+2T>C		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171704	36171704	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121912499		P-0044224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	332	442	0	ENST00000300305.3:c.861C>A	p.Tyr287Ter	p.Y287*	ENST00000300305		287	taC/taA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11293511	11293511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	230	556	0	ENST00000361445.4:c.2365G>C	p.Asp789His	p.D789H	ENST00000361445	NM_004958.3	789	Gat/Cat																																																																														
NF1	4763	MSKCC	GRCh37	17	29552137	29552138	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0044224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	100	257	0	ENST00000358273.4:c.1871_1872del	p.Phe624SerfsTer9	p.F624Sfs*9	ENST00000358273	NM_001042492.2	624	TTt/t																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878764	151878764	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	202	472	0	ENST00000262189.6:c.6181T>C	p.Ser2061Pro	p.S2061P	ENST00000262189	NM_170606.2	2061	Tca/Cca																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504056	123504056	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1362460627		P-0044255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	34	324	0	ENST00000371139.4:c.232C>T	p.Arg78Trp	p.R78W	ENST00000371139	NM_001114937.2	78	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710658	40710658	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	36	377	0	ENST00000373198.4:c.4194-1G>A		p.X1398_splice	ENST00000373198	NM_133170.3	1398																																																																															
RFWD2	0	MSKCC	GRCh37	1	176054951	176054951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	30	449	0	ENST00000367669.3:c.1102G>A	p.Glu368Lys	p.E368K	ENST00000367669	NM_022457.5	368	Gag/Aag																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724427	112724427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	56	574	0	ENST00000369452.4:c.311G>A	p.Arg104His	p.R104H	ENST00000369452	NM_007373.3	104	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	33	340	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs864622237		P-0044298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	64	540	1	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415917	49415918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGAA			P-0044298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	60	370	0	ENST00000301067.7:c.16425_16429dup	p.Cys5477PhefsTer12	p.C5477Ffs*12	ENST00000301067	NM_003482.3	5477	tgt/tTTCCTgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447415	49447415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	91	505	0	ENST00000301067.7:c.683G>T	p.Arg228Leu	p.R228L	ENST00000301067	NM_003482.3	228	cGc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974659	21974684	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCAGACCCTCTACCCACCTGGATCG	TGCAGACCCTCTACCCACCTGGATCG	-			P-0044298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	53	540	0	ENST00000304494.5:c.143_150+18del		p.X48_splice	ENST00000304494	NM_000077.4	48																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974659	21974684	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCAGACCCTCTACCCACCTGGATCG	TGCAGACCCTCTACCCACCTGGATCG	-			P-0044298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	53	540	0	ENST00000304494.5:c.143_150+18del		p.X48_splice	ENST00000304494	NM_000077.4	48																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913233		P-0044325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	590	735	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0044325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	145	360	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176330	24176330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs1057517825		P-0044325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	532	722	0	ENST00000263121.7:c.1121G>A	p.Arg374Gln	p.R374Q	ENST00000263121	NM_003073.3	374	cGg/cAg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0044325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	314	715	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	154	375	0				ENST00000310581	NM_198253.2																																																																																
CDK8	1024	MSKCC	GRCh37	13	26923245	26923245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs997541090		P-0044325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	98	273	0	ENST00000381527.3:c.241C>T	p.Leu81Phe	p.L81F	ENST00000381527	NM_001260.1	81	Ctt/Ttt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913402	32913402	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs397507343		P-0044325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	62	375	0	ENST00000380152.3:c.4910T>G	p.Val1637Gly	p.V1637G	ENST00000380152		1637	gTt/gGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549812	187549812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	98	466	0	ENST00000441802.2:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000441802	NM_005245.3	1477	Caa/Taa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979315	93979315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	63	452	0	ENST00000369303.4:c.1513C>G	p.Leu505Val	p.L505V	ENST00000369303	NM_004440.3	505	Ctg/Gtg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	67	328	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	68	423	0	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	97	509	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256769	19256769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	56	334	3	ENST00000162023.5:c.944del	p.Pro315GlnfsTer?	p.P315Qfs*?	ENST00000162023		315	cCa/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	37	277	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	90	384	1	ENST00000409792.3:c.6190_6191del	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104893809		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	80	301	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1423325504		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	65	336	0	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	253	428	1	ENST00000407977.2:c.349del	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	104	463	4	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453398	40453399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs773909918		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	64	532	2	ENST00000345506.4:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000345506	NM_003152.3	365	-/C																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	84	378	3	ENST00000261937.6:c.89del	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	57	233	0	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	10	69	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749932		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	83	364	0	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	52	373	0	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191049	185191049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	66	446	1	ENST00000265026.3:c.1934del	p.Pro645LeufsTer19	p.P645Lfs*19	ENST00000265026	NM_004721.4	644	Ccc/cc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865540	57865540	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1295636010		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	189	446	1	ENST00000228682.2:c.3017G>A	p.Gly1006Asp	p.G1006D	ENST00000228682	NM_005269.2	1006	gGc/gAc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	43	487	2	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434613	99434613	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1253103806		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	100	380	0	ENST00000268035.6:c.700G>A	p.Glu234Lys	p.E234K	ENST00000268035	NM_000875.3	234	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11130337	11130337	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs281875226		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	124	374	1	ENST00000344626.4:c.2576C>T	p.Thr859Met	p.T859M	ENST00000344626	NM_003072.3	859	aCg/aTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135801087	135801087	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs118203357		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	63	292	0	ENST00000298552.3:c.250G>A	p.Ala84Thr	p.A84T	ENST00000298552	NM_001162426.1	84	Gcc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	122	501	0	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
TEK	7010	MSKCC	GRCh37	9	27158026	27158026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	93	466	3	ENST00000380036.4:c.255del	p.Val86LeufsTer31	p.V86Lfs*31	ENST00000380036	NM_000459.3	84	Aaa/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427611	49427611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs561903173		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	68	387	1	ENST00000301067.7:c.10877G>A	p.Arg3626Gln	p.R3626Q	ENST00000301067	NM_003482.3	3626	cGg/cAg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794440	42794440	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776806622		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	134	579	1	ENST00000575354.2:c.1520G>A	p.Arg507His	p.R507H	ENST00000575354	NM_015125.3	507	cGc/cAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412242	139412242	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	83	441	0	ENST00000277541.6:c.1403T>C	p.Leu468Pro	p.L468P	ENST00000277541	NM_017617.3	468	cTg/cCg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936067	49936067	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201544530		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	87	470	0	ENST00000296474.3:c.1603C>T	p.Arg535Cys	p.R535C	ENST00000296474	NM_002447.2	535	Cgt/Tgt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671680	67671680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201916739		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	75	373	2	ENST00000264010.4:c.2089G>A	p.Ala697Thr	p.A697T	ENST00000264010	NM_006565.3	697	Gca/Aca																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952291	17952291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1376805771		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	42	472	0	ENST00000458235.1:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000458235	NM_000215.3	350	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448517	49448517	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763644658		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	91	322	0	ENST00000301067.7:c.194G>A	p.Arg65His	p.R65H	ENST00000301067	NM_003482.3	65	cGt/cAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106155385	106155385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1187881284		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	39	325	0	ENST00000380013.4:c.286C>T	p.Arg96Cys	p.R96C	ENST00000380013	NM_001127208.2	96	Cgc/Tgc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041882	14041882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	59	248	0	ENST00000311895.7:c.2429C>T	p.Ala810Val	p.A810V	ENST00000311895	NM_005236.2	810	gCg/gTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923700	39923700	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372187961		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	140	257	1	ENST00000378444.4:c.3391C>T	p.Arg1131Trp	p.R1131W	ENST00000378444	NM_001123385.1	1131	Cgg/Tgg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11291020	11291020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	53	273	0	ENST00000361445.4:c.2741C>T	p.Ala914Val	p.A914V	ENST00000361445	NM_004958.3	914	gCt/gTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254677	16254677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	88	436	0	ENST00000375759.3:c.1942C>T	p.Arg648Trp	p.R648W	ENST00000375759	NM_015001.2	648	Cgg/Tgg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937202	36937202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	78	450	1	ENST00000361632.4:c.1117G>A	p.Val373Ile	p.V373I	ENST00000361632		373	Gtt/Att																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115272998	115272999	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	61	408	0	ENST00000438362.2:c.1374dup	p.Leu459ThrfsTer30	p.L459Tfs*30	ENST00000438362	NM_001242891.1	458	-/A																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468184	120468185	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	87	415	1	ENST00000256646.2:c.4254dup	p.Ser1419GlnfsTer22	p.S1419Qfs*22	ENST00000256646	NM_024408.3	1418	-/C																																																																														
PARP1	142	MSKCC	GRCh37	1	226568856	226568856	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	70	377	0	ENST00000366794.5:c.1213A>G	p.Lys405Glu	p.K405E	ENST00000366794	NM_001618.3	405	Aag/Gag																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851252	63851252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	118	364	0	ENST00000279873.7:c.2030T>C	p.Leu677Pro	p.L677P	ENST00000279873	NM_032199.2	677	cTg/cCg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910764	114910764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	84	347	0	ENST00000543371.1:c.886del	p.His296IlefsTer19	p.H296Ifs*19	ENST00000543371	NM_001198531.1	295	Ccc/cc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575445	64575446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	61	431	0	ENST00000337652.1:c.586dup	p.Glu196GlyfsTer5	p.E196Gfs*5	ENST00000337652	NM_130803.2	196	gag/gGag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244052	46244052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	83	325	0	ENST00000334344.6:c.2146G>A	p.Ala716Thr	p.A716T	ENST00000334344	NM_152641.2	716	Gct/Act																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900365	3900365	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750411228		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	113	376	0	ENST00000262367.5:c.731C>T	p.Thr244Met	p.T244M	ENST00000262367	NM_004380.2	244	aCg/aTg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56792497	56792497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	30	284	0	ENST00000308159.5:c.227A>G	p.Gln76Arg	p.Q76R	ENST00000308159	NM_014669.4	76	cAg/cGg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89809229	89809231	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	117	366	0	ENST00000389301.3:c.3742_3744del	p.Lys1248del	p.K1248del	ENST00000389301	NM_000135.2	1248	AAG/-																																																																														
FANCA	2175	MSKCC	GRCh37	16	89833593	89833593	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs752160950		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	82	248	0	ENST00000389301.3:c.2557C>T	p.Arg853Ter	p.R853*	ENST00000389301	NM_000135.2	853	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29663768	29663768	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs137854561		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	189	303	0	ENST00000358273.4:c.6263T>C	p.Leu2088Pro	p.L2088P	ENST00000358273	NM_001042492.2	2088	cTg/cCg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41242965	41242965	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507226		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	48	228	0	ENST00000357654.3:c.4181C>T	p.Thr1394Ile	p.T1394I	ENST00000357654	NM_007294.3	1394	aCt/aTt																																																																														
YES1	7525	MSKCC	GRCh37	18	745987	745987	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs774045264		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	32	279	0	ENST00000314574.4:c.535C>T	p.Arg179Ter	p.R179*	ENST00000314574	NM_005433.3	179	Cga/Tga																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39573289	39573290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	68	224	0	ENST00000262039.4:c.775dup	p.Gln259ProfsTer9	p.Q259Pfs*9	ENST00000262039	NM_002647.2	257	gac/gaCc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291474	10291474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753673660		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	42	387	2	ENST00000340748.4:c.205C>T	p.Arg69Cys	p.R69C	ENST00000340748		69	Cgt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272507	15272507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	65	297	0	ENST00000263388.2:c.5932C>A	p.Leu1978Met	p.L1978M	ENST00000263388	NM_000435.2	1978	Ctg/Atg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223430	36223430	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376111760		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	148	557	0	ENST00000222270.7:c.5980G>A	p.Ala1994Thr	p.A1994T	ENST00000222270	NM_014727.1	1994	Gcg/Acg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224064	36224064	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1185544469		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	175	513	1	ENST00000222270.7:c.6614C>T	p.Ala2205Val	p.A2205V	ENST00000222270	NM_014727.1	2205	gCt/gTt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693838	47693838	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750780		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	44	206	0	ENST00000233146.2:c.1552C>T	p.Gln518Ter	p.Q518*	ENST00000233146	NM_000251.2	518	Cag/Tag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729879	30729879	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	37	193	0	ENST00000359013.4:c.1475T>C	p.Val492Ala	p.V492A	ENST00000359013	NM_001024847.2	492	gTa/gCa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52613085	52613085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1318993618		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	66	246	0	ENST00000394830.3:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000394830	NM_018313.4	1148	cGt/cAt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807782	1807782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	62	398	0	ENST00000260795.2:c.1841T>C	p.Ile614Thr	p.I614T	ENST00000260795		614	aTc/aCc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247352	153247352	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	52	211	0	ENST00000281708.4:c.1450A>G	p.Arg484Gly	p.R484G	ENST00000281708	NM_033632.3	484	Agg/Ggg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753117	57753117	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1185917187		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	56	277	0	ENST00000274289.3:c.899C>T	p.Pro300Leu	p.P300L	ENST00000274289	NM_006622.3	300	cCg/cTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	80160688	80160688	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	76	403	0	ENST00000265081.6:c.3057A>T	p.Lys1019Asn	p.K1019N	ENST00000265081	NM_002439.4	1019	aaA/aaT																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910609	29910609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	86	528	1	ENST00000376809.5:c.149G>T	p.Gly50Val	p.G50V	ENST00000376809	NM_002116.7	50	gGc/gTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675696	30675696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	110	566	0	ENST00000376406.3:c.2660G>A	p.Arg887Lys	p.R887K	ENST00000376406	NM_014641.2	887	aGg/aAg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323312	31323312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	23	168	0	ENST00000412585.2:c.677G>T	p.Arg226Met	p.R226M	ENST00000412585	NM_005514.6	226	aGg/aTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324142	31324142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	36	377	0	ENST00000412585.2:c.421G>A	p.Ala141Thr	p.A141T	ENST00000412585	NM_005514.6	141	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878988	151878988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138373177		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	73	337	0	ENST00000262189.6:c.5957G>A	p.Arg1986Gln	p.R1986Q	ENST00000262189	NM_170606.2	1986	cGg/cAg																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345797	152345797	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149186933		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	59	271	0	ENST00000359321.1:c.773G>A	p.Arg258His	p.R258H	ENST00000359321	NM_005431.1	258	cGt/cAt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271232	38271232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781328162		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	101	514	0	ENST00000425967.3:c.2476G>A	p.Val826Ile	p.V826I	ENST00000425967	NM_001174067.1	826	Gtc/Atc																																																																														
NBN	4683	MSKCC	GRCh37	8	90995085	90995085	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs771475965		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	18	212	0	ENST00000265433.3:c.38-2A>G		p.X13_splice	ENST00000265433	NM_002485.4	13																																																																															
AGO2	27161	MSKCC	GRCh37	8	141595359	141595359	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs899336296		P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	118	433	0	ENST00000220592.5:c.74C>A	p.Pro25His	p.P25H	ENST00000220592	NM_012154.3	25	cCt/cAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391910	139391910	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	89	501	0	ENST00000277541.6:c.6281A>G	p.Asp2094Gly	p.D2094G	ENST00000277541	NM_017617.3	2094	gAc/gGc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139411825	139411825	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	76	433	0	ENST00000277541.6:c.1454T>C	p.Val485Ala	p.V485A	ENST00000277541	NM_017617.3	485	gTg/gCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	183	544	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398287	25398288	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	111	398	0	ENST00000256078.4:c.29_31dup	p.Gly10dup	p.G10dup	ENST00000256078	NM_033360.2	10	gct/gGAGct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538990	187538990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755244994		P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	197	479	0	ENST00000441802.2:c.8750G>A	p.Arg2917Gln	p.R2917Q	ENST00000441802	NM_005245.3	2917	cGa/cAa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573127	64573127	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs566593066		P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	111	369	0	ENST00000337652.1:c.1180C>T	p.Arg394Trp	p.R394W	ENST00000337652	NM_130803.2	394	Cgg/Tgg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163748	152163748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs104893956		P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	141	415	0	ENST00000206249.3:c.469C>T	p.Arg157Ter	p.R157*	ENST00000206249	NM_000125.3	157	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108202605	108202605	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	91	280	0	ENST00000278616.4:c.7630-1G>A		p.X2544_splice	ENST00000278616	NM_000051.3	2544																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18691208	18691208	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	114	322	0	ENST00000266497.5:c.3319A>G	p.Arg1107Gly	p.R1107G	ENST00000266497		1107	Aga/Gga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628421	187628421	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1410329862		P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	291	698	0	ENST00000441802.2:c.2561A>G	p.Asn854Ser	p.N854S	ENST00000441802	NM_005245.3	854	aAc/aGc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163846	32163846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	150	494	0	ENST00000375023.3:c.5380G>A	p.Glu1794Lys	p.E1794K	ENST00000375023	NM_004557.3	1794	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0044360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	48	317	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	104	504	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946426	2946426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1471772603		P-0044360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	87	537	1	ENST00000396946.4:c.3311G>A	p.Arg1104Gln	p.R1104Q	ENST00000396946	NM_032415.4	1104	cGg/cAg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843595	156843595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139875058		P-0044360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	87	539	1	ENST00000524377.1:c.1021G>A	p.Val341Met	p.V341M	ENST00000524377	NM_002529.3	341	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	112	247	0				ENST00000310581	NM_198253.2																																																																																
RHOA	387	MSKCC	GRCh37	3	49397742	49397742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552757		P-0044366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	581	548	1	ENST00000418115.1:c.482C>T	p.Ala161Val	p.A161V	ENST00000418115	NM_001664.2	161	gCa/gTa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128199980	128199980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	670	541	0	ENST00000341105.2:c.1325A>G	p.His442Arg	p.H442R	ENST00000341105	NM_032638.4	442	cAc/cGc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20150361	20150361	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	155	168	0	ENST00000379607.5:c.276T>G	p.Ile92Met	p.I92M	ENST00000379607	NM_001412.3	92	atT/atG																																																																														
EP300	2033	MSKCC	GRCh37	22	41513813	41513814	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0044366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	299	472	1	ENST00000263253.7:c.717_718delinsT	p.Gln240SerfsTer7	p.Q240Sfs*7	ENST00000263253	NM_001429.3	239	ccCCag/ccTag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	12	310	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	11	183	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579472	7579473	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	104	695	1	ENST00000269305.4:c.214_215delinsG	p.Pro72AlafsTer51	p.P72Afs*51	ENST00000269305	NM_001126112.2	72	CCc/Gc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307414	118307416	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-	rs781936420		P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	10	32	0	ENST00000534358.1:c.200_202del	p.Ala67del	p.A67del	ENST00000534358	NM_005933.3	63	GCG/-																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212439	5212439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150241840		P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	148	792	1	ENST00000357368.4:c.4678G>A	p.Val1560Met	p.V1560M	ENST00000357368	NM_002850.3	1560	Gtg/Atg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32931914	32931914	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	22	225	0	ENST00000380152.3:c.7653A>T	p.Lys2551Asn	p.K2551N	ENST00000380152		2551	aaA/aaT																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881010	37881010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	67	764	0	ENST00000269571.5:c.2339C>A	p.Pro780Gln	p.P780Q	ENST00000269571		780	cCa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112173516	112173516	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	17	266	0	ENST00000257430.4:c.2226del	p.Met743CysfsTer18	p.M743Cfs*18	ENST00000257430	NM_000038.5	742	aTt/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs876659802		P-0044433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	118	702	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769408892		P-0044433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	25	488	0	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0044433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	38	328	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	29519815	29519815	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75158395		P-0044433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	66	510	0	ENST00000389048.3:c.1756G>A	p.Ala586Thr	p.A586T	ENST00000389048	NM_004304.4	586	Gcc/Acc																																																																														
NF1	4763	MSKCC	GRCh37	17	29657409	29657409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1465309384		P-0044433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	69	548	0	ENST00000358273.4:c.5705C>T	p.Ala1902Val	p.A1902V	ENST00000358273	NM_001042492.2	1902	gCc/gTc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271150	38271150	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758677681		P-0044460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	12	515	2	ENST00000425967.3:c.2558G>A	p.Arg853His	p.R853H	ENST00000425967	NM_001174067.1	853	cGc/cAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419043	419043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	10	544	0	ENST00000399788.2:c.3304G>A	p.Glu1102Lys	p.E1102K	ENST00000399788	NM_001042603.1	1102	Gaa/Aaa																																																																														
VHL	7428	MSKCC	GRCh37	3	10188253	10188256	+	protein_altering_variant	In_Frame_Del	DEL	AACT	AACT	C			P-0044460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	21	716	0	ENST00000256474.2:c.396_399delinsC	p.Gln132_Thr133delinsHis	p.Q132_T133delinsH	ENST00000256474	NM_000551.3	132	caAACT/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913528		P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	72	459	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245506	153245506	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	40	418	0	ENST00000281708.4:c.1685C>A	p.Ser562Ter	p.S562*	ENST00000281708	NM_033632.3	562	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579357	7579357	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	576	798	0	ENST00000269305.4:c.330del	p.Leu111TrpfsTer12	p.L111Wfs*12	ENST00000269305	NM_001126112.2	110	cgT/cg																																																																														
FH	2271	MSKCC	GRCh37	1	241669390	241669390	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772190176		P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	26	346	0	ENST00000366560.3:c.817G>A	p.Ala273Thr	p.A273T	ENST00000366560	NM_000143.3	273	Gca/Aca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440675	56440675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	59	714	0	ENST00000407977.2:c.543G>T	p.Lys181Asn	p.K181N	ENST00000407977		181	aaG/aaT																																																																														
RB1	5925	MSKCC	GRCh37	13	48947540	48947540	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	182	342	0	ENST00000267163.4:c.1128-1G>T		p.X376_splice	ENST00000267163	NM_000321.2	376																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748126	41748126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	26	264	1	ENST00000226382.2:c.643G>A	p.Gly215Ser	p.G215S	ENST00000226382	NM_003924.3	215	Ggc/Agc																																																																														
PGR	5241	MSKCC	GRCh37	11	100999347	100999347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	84	1057	2	ENST00000325455.5:c.455C>T	p.Pro152Leu	p.P152L	ENST00000325455	NM_001202474.3	152	cCg/cTg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206665081	206665081	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	45	391	1	ENST00000367120.3:c.1834A>G	p.Arg612Gly	p.R612G	ENST00000367120	NM_014002.3	612	Agg/Ggg																																																																														
FH	2271	MSKCC	GRCh37	1	241675293	241675293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	43	409	0	ENST00000366560.3:c.529C>A	p.Pro177Thr	p.P177T	ENST00000366560	NM_000143.3	177	Ccc/Acc																																																																														
RET	5979	MSKCC	GRCh37	10	43622068	43622068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	57	424	0	ENST00000355710.3:c.3085T>C	p.Tyr1029His	p.Y1029H	ENST00000355710	NM_020975.4	1029	Tat/Cat																																																																														
HRAS	3265	MSKCC	GRCh37	11	533604	533604	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	71	655	0	ENST00000311189.7:c.299T>A	p.Ile100Asn	p.I100N	ENST00000311189		100	aTc/aAc																																																																														
ATM	472	MSKCC	GRCh37	11	108196084	108196084	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	30	510	0	ENST00000278616.4:c.6620A>T	p.Lys2207Ile	p.K2207I	ENST00000278616	NM_000051.3	2207	aAa/aTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425759	49425759	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	138	738	0	ENST00000301067.7:c.12729C>A	p.Tyr4243Ter	p.Y4243*	ENST00000301067	NM_003482.3	4243	taC/taA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929256	32929256	+	stop_gained	Nonsense_Mutation	SNP	T	T	A	rs730882169		P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	69	569	0	ENST00000380152.3:c.7266T>A	p.Cys2422Ter	p.C2422*	ENST00000380152		2422	tgT/tgA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95556956	95556956	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1299000813		P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	56	630	0	ENST00000343455.3:c.5648A>G	p.Glu1883Gly	p.E1883G	ENST00000343455	NM_177438.2	1883	gAa/gGa																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128220	30128220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	80	698	1	ENST00000263025.4:c.1012G>A	p.Asp338Asn	p.D338N	ENST00000263025	NM_002746.2	338	Gat/Aat																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032519	12032519	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	233	353	0	ENST00000353533.5:c.955del	p.Gln319LysfsTer3	p.Q319Kfs*3	ENST00000353533	NM_003010.3	319	Caa/aa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453473	40453473	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	143	809	0	ENST00000345506.4:c.1169+1G>A		p.X390_splice	ENST00000345506	NM_003152.3	390																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22143086	22143086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	41	438	0	ENST00000215832.6:c.621G>C	p.Lys207Asn	p.K207N	ENST00000215832	NM_002745.4	207	aaG/aaC																																																																														
KIT	3815	MSKCC	GRCh37	4	55569983	55569983	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	21	384	0	ENST00000288135.5:c.850G>C	p.Asp284His	p.D284H	ENST00000288135	NM_000222.2	284	Gat/Cat																																																																														
TET2	54790	MSKCC	GRCh37	4	106155342	106155342	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	157	421	0	ENST00000380013.4:c.243A>C	p.Glu81Asp	p.E81D	ENST00000380013	NM_001127208.2	81	gaA/gaC																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659179	86659179	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	25	177	0	ENST00000274376.6:c.1468T>G	p.Trp490Gly	p.W490G	ENST00000274376	NM_002890.2	490	Tgg/Ggg																																																																														
APC	324	MSKCC	GRCh37	5	112178748	112178748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	22	411	0	ENST00000257430.4:c.7457C>T	p.Pro2486Leu	p.P2486L	ENST00000257430	NM_000038.5	2486	cCt/cTt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149452910	149452910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	65	597	0	ENST00000286301.3:c.1036C>A	p.Gln346Lys	p.Q346K	ENST00000286301	NM_005211.3	346	Cag/Aag																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29195934	29195934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	70	923	0	ENST00000240100.2:c.664A>G	p.Ile222Val	p.I222V	ENST00000240100	NM_001394.6	222	Atc/Gtc																																																																														
NBN	4683	MSKCC	GRCh37	8	90965667	90965667	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	17	340	0	ENST00000265433.3:c.1650A>C	p.Lys550Asn	p.K550N	ENST00000265433	NM_002485.4	550	aaA/aaC																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966600	36966632	+	inframe_deletion	In_Frame_Del	DEL	CTCAAACACGCGGTCCAGCACCTCCAGCTGCTG	CTCAAACACGCGGTCCAGCACCTCCAGCTGCTG	-			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	65	682	0	ENST00000358127.4:c.694_726del	p.Gln232_Glu242del	p.Q232_E242del	ENST00000358127	NM_001280556.1	232	CAGCAGCTGGAGGTGCTGGACCGCGTGTTTGAG/-																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139407503	139407503	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	72	721	0	ENST00000277541.6:c.2437T>A	p.Tyr813Asn	p.Y813N	ENST00000277541	NM_017617.3	813	Tac/Aac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045689	47045716	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGTGACAACATTGGCAGTCGGATGCT	GCAGTGACAACATTGGCAGTCGGATGCT	-			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	65	460	0	ENST00000329236.7:c.2340_2367del	p.Ser780ArgfsTer19	p.S780Rfs*19	ENST00000329236	NM_001204466.1	779	gGCAGTGACAACATTGGCAGTCGGATGCTg/gg																																																																														
NF1	4763	MSKCC	GRCh37	17	29553560	29553609	+	protein_altering_variant	In_Frame_Del	DEL	TCTGGTTGCCATGTCCTGTTTCCGCCACCTCTGTGAGGAAGCAGATATCC	TCTGGTTGCCATGTCCTGTTTCCGCCACCTCTGTGAGGAAGCAGATATCC	GG			P-0044506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	112	338	3	ENST00000358273.4:c.2109_2158delinsGG	p.Leu704_Arg720delinsGly	p.L704_R720delinsG	ENST00000358273	NM_001042492.2	703	gtTCTGGTTGCCATGTCCTGTTTCCGCCACCTCTGTGAGGAAGCAGATATCCgg/gtGGgg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519967		P-0044509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	143	445	0	ENST00000347630.2:c.398T>G	p.Phe133Cys	p.F133C	ENST00000347630	NM_001007230.1	133	tTc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	164	274	0				ENST00000310581	NM_198253.2																																																																																
IDH2	3418	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1057519906		P-0044529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			750	316	549	0	ENST00000330062.3:c.514A>T	p.Arg172Trp	p.R172W	ENST00000330062	NM_002168.2	172	Agg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0044529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	1011	698	2	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
ALK	238	MSKCC	GRCh37	2	29455208	29455208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	297	559	1	ENST00000389048.3:c.2594C>A	p.Ser865Tyr	p.S865Y	ENST00000389048	NM_004304.4	865	tCc/tAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420104	41420104	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0044529-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	116	351	0	ENST00000373198.4:c.217T>C	p.Ser73Pro	p.S73P	ENST00000373198	NM_133170.3	73	Tct/Cct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	27	280	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0044534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	100	537	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501194		P-0044572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	66	508	0	ENST00000269305.4:c.790del	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	264	Cta/ta																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144114	11144114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	12	1007	0	ENST00000344626.4:c.3695G>A	p.Gly1232Asp	p.G1232D	ENST00000344626	NM_003072.3	1232	gGc/gAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29550583	29550583	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0044578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	63	290	0	ENST00000358273.4:c.1843A>G	p.Lys615Glu	p.K615E	ENST00000358273	NM_001042492.2	615	Aag/Gag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442054	52442054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	134	824	0	ENST00000460680.1:c.295G>A	p.Val99Met	p.V99M	ENST00000460680	NM_004656.3	99	Gtg/Atg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11168301	11168301	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	144	781	1	ENST00000361445.4:c.7571A>T	p.Gln2524Leu	p.Q2524L	ENST00000361445	NM_004958.3	2524	cAa/cTa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643806	52643807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	146	722	0	ENST00000394830.3:c.2089_2090insC	p.Tyr697SerfsTer5	p.Y697Sfs*5	ENST00000394830	NM_018313.4	697	tat/tCat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	15	367	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0044610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	25	520	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	34	545	0	ENST00000397062.3:c.246A>T	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	28	338	0	ENST00000371953.3:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000371953	NM_000314.4	92	Gac/Tac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	11	92	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117632251	117632251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	24	449	0	ENST00000368508.3:c.6165C>A	p.Asp2055Glu	p.D2055E	ENST00000368508	NM_002944.2	2055	gaC/gaA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	130	378	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	205	546	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29546098	29546098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	114	431	0	ENST00000358273.4:c.1603C>T	p.Gln535Ter	p.Q535*	ENST00000358273	NM_001042492.2	535	Cag/Tag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808916	1808916	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	361	789	0	ENST00000260795.2:c.2348C>G	p.Ser783Ter	p.S783*	ENST00000260795		783	tCa/tGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873483	151873483	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	254	456	1	ENST00000262189.6:c.9055C>T	p.Gln3019Ter	p.Q3019*	ENST00000262189	NM_170606.2	3019	Cag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52713670	52713670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	241	392	0	ENST00000394830.3:c.58G>C	p.Asp20His	p.D20H	ENST00000394830	NM_018313.4	20	Gat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088802	27088803	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	222	503	0	ENST00000324856.7:c.2414dup	p.Gln806ThrfsTer11	p.Q806Tfs*11	ENST00000324856	NM_006015.4	804	ggc/ggCc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118339493	118339493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782605513		P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	147	320	0	ENST00000534358.1:c.436G>A	p.Glu146Lys	p.E146K	ENST00000534358	NM_005933.3	146	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342706	118342709	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	34	225	0	ENST00000534358.1:c.835_838del	p.Ser279LeufsTer13	p.S279Lfs*13	ENST00000534358	NM_005933.3	278	CTCTct/ct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437547	49437547	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	285	546	0	ENST00000301067.7:c.5338G>T	p.Glu1780Ter	p.E1780*	ENST00000301067	NM_003482.3	1780	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443518	49443518	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	180	516	0	ENST00000301067.7:c.3853G>T	p.Glu1285Ter	p.E1285*	ENST00000301067	NM_003482.3	1285	Gag/Tag																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733141	74733141	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	105	606	0	ENST00000359995.5:c.102C>G	p.Phe34Leu	p.F34L	ENST00000359995	NM_001195427.1	34	ttC/ttG																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52713620	52713621	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	206	394	0	ENST00000394830.3:c.107_108delinsAA	p.Arg36Lys	p.R36K	ENST00000394830	NM_018313.4	36	aGG/aAA																																																																														
KIT	3815	MSKCC	GRCh37	4	55602738	55602738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	44	332	0	ENST00000288135.5:c.2559G>A	p.Trp853Ter	p.W853*	ENST00000288135	NM_000222.2	853	tgG/tgA																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526428	31526428	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs781066515		P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	350	950	0	ENST00000344624.3:c.612C>G	p.Phe204Leu	p.F204L	ENST00000344624		204	ttC/ttG																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547180	106547180	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	47	207	0	ENST00000369096.4:c.417T>A	p.Tyr139Ter	p.Y139*	ENST00000369096	NM_001198.3	139	taT/taA																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38148029	38148029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	325	554	0	ENST00000317025.8:c.3082G>A	p.Glu1028Lys	p.E1028K	ENST00000317025	NM_023034.1	1028	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	264	413	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056352	27056352	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0044750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	164	373	1	ENST00000324856.7:c.1348C>T	p.Gln450Ter	p.Q450*	ENST00000324856	NM_006015.4	450	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577495	7577507	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGACCTGGAGTCT	TGACCTGGAGTCT	-			P-0044750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	343	640	0	ENST00000269305.4:c.774_782+4del		p.X258_splice	ENST00000269305	NM_001126112.2	258																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89457254	89457254	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	92	354	0	ENST00000336596.2:c.1735A>G	p.Lys579Glu	p.K579E	ENST00000336596	NM_005233.5	579	Aaa/Gaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157525039	157525039	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	144	345	0	ENST00000346085.5:c.4934C>G	p.Ser1645Ter	p.S1645*	ENST00000346085	NM_020732.3	1645	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	636	780	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332882	70332882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	125	680	0	ENST00000373644.4:c.787C>G	p.Gln263Glu	p.Q263E	ENST00000373644	NM_030625.2	263	Caa/Gaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55214313	55214313	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs532655845		P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	180	635	0	ENST00000275493.2:c.439G>A	p.Ala147Thr	p.A147T	ENST00000275493	NM_005228.3	147	Gcc/Acc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11169765	11169765	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	86	537	0	ENST00000361445.4:c.7388T>A	p.Leu2463His	p.L2463H	ENST00000361445	NM_004958.3	2463	cTt/cAt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941071	36941071	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	117	793	0	ENST00000361632.4:c.268C>A	p.Pro90Thr	p.P90T	ENST00000361632		90	Ccc/Acc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77051761	77051761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	84	575	0	ENST00000356341.3:c.1046G>C	p.Gly349Ala	p.G349A	ENST00000356341	NM_002576.4	349	gGa/gCa																																																																														
ATM	472	MSKCC	GRCh37	11	108201082	108201082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	128	397	0	ENST00000278616.4:c.7449G>T	p.Trp2483Cys	p.W2483C	ENST00000278616	NM_000051.3	2483	tgG/tgT																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644427	18644427	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1419629305		P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	49	333	0	ENST00000266497.5:c.2605C>G	p.Gln869Glu	p.Q869E	ENST00000266497		869	Caa/Gaa																																																																														
RB1	5925	MSKCC	GRCh37	13	48934254	48934254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	80	365	0	ENST00000267163.4:c.709G>C	p.Glu237Gln	p.E237Q	ENST00000267163	NM_000321.2	237	Gaa/Caa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646920	23646920	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658867		P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	97	585	0	ENST00000261584.4:c.947C>T	p.Pro316Leu	p.P316L	ENST00000261584	NM_024675.3	316	cCc/cTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541188	187541188	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	58	349	0	ENST00000441802.2:c.6552A>C	p.Lys2184Asn	p.K2184N	ENST00000441802	NM_005245.3	2184	aaA/aaC																																																																														
CDK6	1021	MSKCC	GRCh37	7	92404100	92404100	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	80	451	1	ENST00000265734.4:c.279A>T	p.Lys93Asn	p.K93N	ENST00000265734	NM_001259.6	93	aaA/aaT																																																																														
LYN	4067	MSKCC	GRCh37	8	56910938	56910938	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	110	572	0	ENST00000519728.1:c.1084A>G	p.Asn362Asp	p.N362D	ENST00000519728	NM_002350.3	362	Aac/Gac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412698	139412698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	120	930	0	ENST00000277541.6:c.1146C>G	p.Asn382Lys	p.N382K	ENST00000277541	NM_017617.3	382	aaC/aaG																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929284	44929284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	127	690	0	ENST00000377967.4:c.2384G>A	p.Gly795Glu	p.G795E	ENST00000377967	NM_021140.2	795	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913383		P-0044786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	359	416	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913383		P-0044786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	359	416	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	158	306	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MED12	9968	MSKCC	GRCh37	X	70338657	70338657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	300	547	0	ENST00000374080.3:c.53G>A	p.Arg18Gln	p.R18Q	ENST00000374080		18	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578441	7578441	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	496	756	0	ENST00000269305.4:c.489del	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/ta																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs121913383		P-0044786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	359	416	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603007	48603007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0044786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	76	246	0	ENST00000342988.3:c.1309-1G>T		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0044796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	100	606	1	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562181	21562181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	160	801	1	ENST00000382592.4:c.1738G>A	p.Val580Ile	p.V580I	ENST00000382592	NM_014572.2	580	Gtc/Atc																																																																														
RB1	5925	MSKCC	GRCh37	13	49050809	49050910	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAAAGTAAAGAATTCTGTAATTTGTAGACTTCTGAGAAGTTCCAGAAAATAAATCAGATGGTATGTAACAGCGACCGTGTGCTCAAAAGAAGTGCTGAAGG	TTAAAGTAAAGAATTCTGTAATTTGTAGACTTCTGAGAAGTTCCAGAAAATAAATCAGATGGTATGTAACAGCGACCGTGTGCTCAAAAGAAGTGCTGAAGG	-			P-0044796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	33	160	0	ENST00000267163.4:c.2521-28_2594del		p.X841_splice	ENST00000267163	NM_000321.2	841																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650662	67650662	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	121	418	0	ENST00000264010.4:c.967A>T	p.Lys323Ter	p.K323*	ENST00000264010	NM_006565.3	323	Aag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243868	41243868	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1295353818		P-0044796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	76	472	0	ENST00000357654.3:c.3680A>G	p.Gln1227Arg	p.Q1227R	ENST00000357654	NM_007294.3	1227	cAa/cGa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499710	8499710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	57	501	0	ENST00000356435.5:c.2259G>T	p.Arg753Ser	p.R753S	ENST00000356435		753	agG/agT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	129	288	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175755	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	120	188	0	ENST00000257430.4:c.4464del	p.Leu1488PhefsTer19	p.L1488Ffs*19	ENST00000257430	NM_000038.5	1488	ttA/tt																																																																														
APC	324	MSKCC	GRCh37	5	112174091	112174094	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0044856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	98	236	0	ENST00000257430.4:c.2802_2805del	p.Tyr935IlefsTer19	p.Y935Ifs*19	ENST00000257430	NM_000038.5	934	ACTTac/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0044856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	255	464	0	ENST00000269305.4:c.672+2T>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	340	493	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0044926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	426	738	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690863		P-0044926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	371	445	1	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	140	253	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872380	45872380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	417	770	0	ENST00000391945.4:c.131C>T	p.Ser44Leu	p.S44L	ENST00000391945	NM_000400.3	44	tCa/tTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974714	21974714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	122	431	1	ENST00000304494.5:c.113C>T	p.Pro38Leu	p.P38L	ENST00000304494	NM_000077.4	38	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974714	21974714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	122	431	1	ENST00000304494.5:c.113C>T	p.Pro38Leu	p.P38L	ENST00000304494	NM_000077.4	38	cCc/cTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864632	68864632	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0044926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	62	168	0	ENST00000288368.4:c.3G>A	p.Met1?	p.M1?	ENST00000288368	NM_024870.2	1	atG/atA																																																																														
CDK8	1024	MSKCC	GRCh37	13	26923300	26923300	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	249	338	0	ENST00000381527.3:c.296A>G	p.Tyr99Cys	p.Y99C	ENST00000381527	NM_001260.1	99	tAt/tGt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061321	38061324	+	frameshift_variant	Frame_Shift_Del	DEL	GACA	GACA	-			P-0044926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	146	731	0	ENST00000250448.2:c.665_668del	p.Leu222ProfsTer98	p.L222Pfs*98	ENST00000250448	NM_004496.3	222	cTGTCc/cc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651866	36651872	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGCTGCA	TGCTGCA	-			P-0044926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	311	613	0	ENST00000244741.5:c.-5-8_-5-2del		p.X2_splice	ENST00000244741	NM_000389.4	2																																																																															
PIM1	5292	MSKCC	GRCh37	6	37141752	37141752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	370	630	0	ENST00000373509.5:c.827C>T	p.Ser276Leu	p.S276L	ENST00000373509	NM_002648.3	276	tCa/tTa																																																																														
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs864622007		P-0044927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	219	181	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061207	38061207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	232	275	1	ENST00000250448.2:c.782G>A	p.Arg261His	p.R261H	ENST00000250448	NM_004496.3	261	cGc/cAc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166184	118166184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371434677		P-0044927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	96	284	1	ENST00000369448.3:c.694G>A	p.Ala232Thr	p.A232T	ENST00000369448	NM_017709.3	232	Gcc/Acc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618502	37618533	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCATCCCTGGGCACAGTTATCAAACCTTT	GCAGCATCCCTGGGCACAGTTATCAAACCTTT	-			P-0044927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	63	361	0	ENST00000447079.4:c.179_210del	p.Ala60GlyfsTer4	p.A60Gfs*4	ENST00000447079	NM_015083.1	60	GCAGCATCCCTGGGCACAGTTATCAAACCTTTg/g																																																																														
CDK12	51755	MSKCC	GRCh37	17	37667852	37667853	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0044927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	84	336	0	ENST00000447079.4:c.2738dup	p.Tyr913Ter	p.Y913*	ENST00000447079	NM_015083.1	913	tac/tAac																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158557	26158557	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	63	386	0	ENST00000289316.2:c.160G>C	p.Gly54Arg	p.G54R	ENST00000289316	NM_138720.2	54	Ggc/Cgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636826	8636826	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1353675904		P-0044955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	171	496	0	ENST00000356435.5:c.83G>A	p.Arg28Gln	p.R28Q	ENST00000356435		28	cGa/cAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120882	115120882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	607	470	1	ENST00000257566.3:c.124C>A	p.Pro42Thr	p.P42T	ENST00000257566	NM_016569.3	42	Ccc/Acc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47690266	47690266	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs730881757		P-0044955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	171	502	0	ENST00000233146.2:c.1483A>G	p.Thr495Ala	p.T495A	ENST00000233146	NM_000251.2	495	Aca/Gca																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186506915	186506915	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0044955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	145	231	0	ENST00000323963.5:c.1081A>G	p.Ile361Val	p.I361V	ENST00000323963		361	Att/Gtt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341250	8341250	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	74	305	0	ENST00000356435.5:c.4966del	p.Ala1656LeufsTer39	p.A1656Lfs*39	ENST00000356435		1656	Gct/ct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	341	329	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0044959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	146	370	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	398	984	1	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044971	47044971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	429	581	0	ENST00000329236.7:c.2063G>C	p.Arg688Pro	p.R688P	ENST00000329236	NM_001204466.1	688	cGc/cCc																																																																														
RB1	5925	MSKCC	GRCh37	13	49047495	49047495	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0044959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	111	271	0	ENST00000267163.4:c.2490-1G>C		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36651963	36651963	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	332	837	3	ENST00000244741.5:c.85C>T	p.Gln29Ter	p.Q29*	ENST00000244741	NM_000389.4	29	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445715	49445745	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGGGGACATGGGTGACTCCTCAGGTGGTG	GGAGGGGACATGGGTGACTCCTCAGGTGGTG	-			P-0044959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	579	1434	1	ENST00000301067.7:c.1721_1751del	p.Pro574HisfsTer346	p.P574Hfs*346	ENST00000301067	NM_003482.3	574	cCACCACCTGAGGAGTCACCCATGTCCCCTCCa/ca																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785538	50785538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	301	712	0	ENST00000398568.2:c.528C>A	p.Phe176Leu	p.F176L	ENST00000398568	NM_001042412.1	176	ttC/ttA																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654651	67654651	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	254	568	1	ENST00000264010.4:c.1138C>T	p.Gln380Ter	p.Q380*	ENST00000264010	NM_006565.3	380	Cag/Tag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182630	99182630	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0044959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	161	426	0	ENST00000074304.5:c.2433G>C	p.Glu811Asp	p.E811D	ENST00000074304	NM_001134224.1	811	gaG/gaC																																																																														
EP300	2033	MSKCC	GRCh37	22	41545177	41545177	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0044959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	250	556	0	ENST00000263253.7:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000263253	NM_001429.3	793	Caa/Taa																																																																														
RHOA	387	MSKCC	GRCh37	3	49399979	49399979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	245	742	0	ENST00000418115.1:c.358G>C	p.Asp120His	p.D120H	ENST00000418115	NM_001664.2	120	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0045114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	335	633	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0045114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	103	207	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0045114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	256	368	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	113	383	0	ENST00000342988.3:c.1529G>A	p.Gly510Glu	p.G510E	ENST00000342988	NM_005359.5	510	gGa/gAa																																																																														
SYK	6850	MSKCC	GRCh37	9	93626944	93626944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	112	426	0	ENST00000375746.1:c.791C>T	p.Thr264Ile	p.T264I	ENST00000375746	NM_001174167.1	264	aCa/aTa																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0045167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	49	228	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	107	724	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250047	39250047	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs754823642		P-0045167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	17	458	0	ENST00000402219.2:c.1522A>C	p.Asn508His	p.N508H	ENST00000402219	NM_005633.3	508	Aat/Cat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505511	157505521	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAGTCTTCA	GGAAGTCTTCA	-			P-0045167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	51	402	0	ENST00000346085.5:c.3493_3503del	p.Glu1165HisfsTer17	p.E1165Hfs*17	ENST00000346085	NM_020732.3	1164	ccGGAAGTCTTCAgc/ccgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934874		P-0045257-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	500	587	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																														
KDR	3791	MSKCC	GRCh37	4	55948787	55948787	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs751902659		P-0045257-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			105	66	285	0	ENST00000263923.4:c.3678C>A	p.Asn1226Lys	p.N1226K	ENST00000263923	NM_002253.2	1226	aaC/aaA																																																																														
NF1	4763	MSKCC	GRCh37	17	29661945	29661945	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854552		P-0045257-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	166	321	0	ENST00000358273.4:c.5902C>T	p.Arg1968Ter	p.R1968*	ENST00000358273	NM_001042492.2	1968	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670671	86670671	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045257-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			53	38	168	0	ENST00000274376.6:c.1949del	p.Asp650AlafsTer7	p.D650Afs*7	ENST00000274376	NM_002890.2	650	gAc/gc																																																																														
ATRX	546	MSKCC	GRCh37	X	76907621	76907621	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	26	224	0	ENST00000373344.5:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000373344	NM_000489.3	1514	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68845724	68845725	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	53	245	0	ENST00000261769.5:c.970_971insT	p.Gly324ValfsTer26	p.G324Vfs*26	ENST00000261769	NM_004360.3	324	gga/gTga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713524	30713524	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	74	302	0	ENST00000359013.4:c.924del	p.Glu308AspfsTer17	p.E308Dfs*17	ENST00000359013	NM_001024847.2	308	gaG/ga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	183	697	1	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16001793	16001793	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	124	427	0	ENST00000268712.3:c.2708C>G	p.Ser903Ter	p.S903*	ENST00000268712	NM_006311.3	903	tCa/tGa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372259	55372270	+	inframe_deletion	In_Frame_Del	DEL	CACCAGCACCAG	CACCAGCACCAG	-	rs760361004		P-0046826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			131	29	436	0	ENST00000297316.4:c.966_977del	p.Gln322_His325del	p.Q322_H325del	ENST00000297316	NM_022454.3	317	CACCAGCACCAG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7574014	7574014	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1064796401		P-0046826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	100	626	0	ENST00000269305.4:c.1013T>C	p.Phe338Ser	p.F338S	ENST00000269305	NM_001126112.2	338	tTc/tCc																																																																														
RB1	5925	MSKCC	GRCh37	13	48923143	48923144	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTT			P-0046826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			103	82	239	0	ENST00000267163.4:c.594_596dup	p.Phe198dup	p.F198dup	ENST00000267163	NM_000321.2	198	-/TTT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	275	715	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	84	275	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	29	380	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																														
PGR	5241	MSKCC	GRCh37	11	100933480	100933480	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766277966		P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	31	177	0	ENST00000325455.5:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000325455	NM_001202474.3	637	cGa/cAa																																																																														
AXL	558	MSKCC	GRCh37	19	41744489	41744489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767925068		P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	90	923	2	ENST00000301178.4:c.1109C>T	p.Ala370Val	p.A370V	ENST00000301178	NM_021913.4	370	gCg/gTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646292	3646300	+	inframe_deletion	In_Frame_Del	DEL	CACAGCCTG	CACAGCCTG	-			P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	73	1166	0	ENST00000294008.3:c.1778_1786del	p.Ala593_Cys595del	p.A593_C595del	ENST00000294008	NM_032444.2	593	gCAGGCTGTGgc/ggc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52675997	52675997	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	60	541	0	ENST00000394830.3:c.1060G>T	p.Glu354Ter	p.E354*	ENST00000394830	NM_018313.4	354	Gaa/Taa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572521	64572522	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0047948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	74	807	0	ENST00000337652.1:c.1349_1350delinsT	p.Gly450ValfsTer13	p.G450Vfs*13	ENST00000337652	NM_130803.2	450	gGC/gT																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52582131	52582131	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	121	286	0	ENST00000394830.3:c.4697T>A	p.Met1566Lys	p.M1566K	ENST00000394830	NM_018313.4	1566	aTg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	324	638	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778720		P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	338	570	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332868	152332868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745723014		P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	68	415	0	ENST00000206249.3:c.1174G>A	p.Val392Ile	p.V392I	ENST00000206249	NM_000125.3	392	Gtc/Atc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	62	258	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863394	57863394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533875222		P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	180	746	0	ENST00000228682.2:c.1489C>T	p.Arg497Cys	p.R497C	ENST00000228682	NM_005269.2	497	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175398	112175399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	87	224	0	ENST00000257430.4:c.4111dup	p.Ser1371LysfsTer4	p.S1371Kfs*4	ENST00000257430	NM_000038.5	1369	-/A																																																																														
JUN	3725	MSKCC	GRCh37	1	59248232	59248232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	32	92	1	ENST00000371222.2:c.511G>T	p.Ala171Ser	p.A171S	ENST00000371222	NM_002228.3	171	Gca/Tca																																																																														
APC	324	MSKCC	GRCh37	5	112175395	112175396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	42	223	0	ENST00000257430.4:c.4107dup	p.Lys1370GlnfsTer5	p.K1370Qfs*5	ENST00000257430	NM_000038.5	1368	-/C																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730910	40730910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370873414		P-0049810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	285	716	3	ENST00000373198.4:c.3625C>T	p.Arg1209Trp	p.R1209W	ENST00000373198	NM_133170.3	1209	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488229	56488229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	287	718	0	ENST00000267101.3:c.1748C>T	p.Pro583Leu	p.P583L	ENST00000267101	NM_001982.3	583	cCc/cTc																																																																														
PARP1	142	MSKCC	GRCh37	1	226574115	226574115	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	231	599	0	ENST00000366794.5:c.746A>G	p.Lys249Arg	p.K249R	ENST00000366794	NM_001618.3	249	aAg/aGg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630388	47630388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1198168331		P-0049810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	307	816	1	ENST00000233146.2:c.58G>A	p.Val20Met	p.V20M	ENST00000233146	NM_000251.2	20	Gtg/Atg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319907	8319907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	186	550	0	ENST00000356435.5:c.5594G>A	p.Arg1865Lys	p.R1865K	ENST00000356435		1865	aGa/aAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211089	55211089	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs746631025		P-0001193-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1529	86	703	0	ENST00000275493.2:c.332T>C	p.Met111Thr	p.M111T	ENST00000275493	NM_005228.3	111	aTg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0002804-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			249	378	273	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0002804-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			350	247	209	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811743	102811743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002804-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			955	130	330	0	ENST00000307046.8:c.441G>T	p.Gln147His	p.Q147H	ENST00000307046	NM_001111285.1	147	caG/caT																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	208	622	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111168	193111168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1452051467		P-0003185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	46	231	0	ENST00000367435.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000367435	NM_024529.4	234	cGa/cAa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-	rs763236375		P-0003185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	89	404	0	ENST00000346208.3:c.922-3_922-2del		p.X308_splice	ENST00000346208		308																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0003185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	155	536	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140349	50140349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			563	109	559	0	ENST00000246792.3:c.192C>A	p.Asp64Glu	p.D64E	ENST00000246792	NM_006270.3	64	gaC/gaA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541847	187541847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747920188		P-0003185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	61	382	1	ENST00000441802.2:c.5893G>A	p.Val1965Ile	p.V1965I	ENST00000441802	NM_005245.3	1965	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0004524-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			215	1035	499	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PARP1	142	MSKCC	GRCh37	1	226574044	226574044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004524-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			735	325	418	0	ENST00000366794.5:c.817C>G	p.Pro273Ala	p.P273A	ENST00000366794	NM_001618.3	273	Cct/Gct																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244244	46244244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004524-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			546	420	412	0	ENST00000334344.6:c.2338C>G	p.Pro780Ala	p.P780A	ENST00000334344	NM_152641.2	780	Cca/Gca																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40447688	40447688	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004524-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			299	865	781	0	ENST00000345506.4:c.427C>G	p.Gln143Glu	p.Q143E	ENST00000345506	NM_003152.3	143	Cag/Gag																																																																														
ATRX	546	MSKCC	GRCh37	X	76939403	76939403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004524-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			866	304	708	0	ENST00000373344.5:c.1345C>G	p.Pro449Ala	p.P449A	ENST00000373344	NM_000489.3	449	Cct/Gct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262222	16262222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004524-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			276	52	102	0	ENST00000375759.3:c.9487C>T	p.His3163Tyr	p.H3163Y	ENST00000375759	NM_015001.2	3163	Cac/Tac																																																																														
BARD1	580	MSKCC	GRCh37	2	215646039	215646039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004524-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			276	179	524	0	ENST00000260947.4:c.559C>G	p.Pro187Ala	p.P187A	ENST00000260947	NM_000465.2	187	Cct/Gct																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713491	30713491	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004524-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			648	38	280	0	ENST00000359013.4:c.891G>C	p.Glu297Asp	p.E297D	ENST00000359013	NM_001024847.2	297	gaG/gaC																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843537	3843537	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004524-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			426	44	413	0	ENST00000262367.5:c.1066C>T	p.Gln356Ter	p.Q356*	ENST00000262367	NM_004380.2	356	Cag/Tag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	59	456	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
ALK	238	MSKCC	GRCh37	2	29754890	29754890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370848188		P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	71	539	0	ENST00000389048.3:c.1045G>A	p.Val349Ile	p.V349I	ENST00000389048	NM_004304.4	349	Gtc/Atc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65313231	65313231	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	37	427	0	ENST00000342505.4:c.1883A>C	p.His628Pro	p.H628P	ENST00000342505	NM_002227.2	628	cAc/cCc																																																																														
ALK	238	MSKCC	GRCh37	2	29917827	29917827	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	80	646	0	ENST00000389048.3:c.841C>G	p.His281Asp	p.H281D	ENST00000389048	NM_004304.4	281	Cat/Gat																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56167795	56167795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	61	560	0	ENST00000399503.3:c.1360G>A	p.Glu454Lys	p.E454K	ENST00000399503	NM_005921.1	454	Gaa/Aaa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482843	67482843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	70	507	0	ENST00000327367.4:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000327367	NM_005902.3	416	tCc/tTc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313222	30313222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	99	739	0	ENST00000262643.3:c.916C>A	p.His306Asn	p.H306N	ENST00000262643	NM_001238.2	306	Cat/Aat																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1057519893		P-0005342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	86	1201	1	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	87	925	6	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
CDH1	999	MSKCC	GRCh37	16	68846037	68846037	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0005342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			27	55	978	0	ENST00000261769.5:c.1009-1G>C		p.X337_splice	ENST00000261769	NM_004360.3	337																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218673	98218673	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368417828		P-0006937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	37	263	0	ENST00000331920.6:c.3191C>T	p.Thr1064Met	p.T1064M	ENST00000331920	NM_000264.3	1064	aCg/aTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68771330	68771330	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	82	298	0	ENST00000261769.5:c.12G>A	p.Trp4Ter	p.W4*	ENST00000261769	NM_004360.3	4	tgG/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	132	382	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	93	304	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0011442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	59	183	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	72	324	0				ENST00000310581	NM_198253.2																																																																																
MSH2	4436	MSKCC	GRCh37	2	47690169	47690169	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	130	419	0	ENST00000233146.2:c.1387-1G>A		p.X463_splice	ENST00000233146	NM_000251.2	463																																																																															
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs267605076		P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	174	676	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089556	27089556	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	145	642	3	ENST00000324856.7:c.2512G>T	p.Gly838Ter	p.G838*	ENST00000324856	NM_006015.4	838	Gga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31015986	31015986	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	108	477	0	ENST00000375687.4:c.308A>G	p.Glu103Gly	p.E103G	ENST00000375687	NM_015338.5	103	gAg/gGg																																																																														
NF1	4763	MSKCC	GRCh37	17	29684109	29684109	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs1329683225		P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	116	399	1	ENST00000358273.4:c.7869+1G>A		p.X2623_splice	ENST00000358273	NM_001042492.2	2623																																																																															
MTOR	2475	MSKCC	GRCh37	1	11272925	11272925	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	140	484	0	ENST00000361445.4:c.3326A>T	p.Asp1109Val	p.D1109V	ENST00000361445	NM_004958.3	1109	gAc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099050	27099050	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	153	556	0	ENST00000324856.7:c.3466G>T	p.Glu1156Ter	p.E1156*	ENST00000324856	NM_006015.4	1156	Gaa/Taa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739128	46739128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	147	556	0	ENST00000371975.4:c.1477C>A	p.Gln493Lys	p.Q493K	ENST00000371975	NM_003579.3	493	Cag/Aag																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206653387	206653387	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	110	415	0	ENST00000367120.3:c.1271A>T	p.Gln424Leu	p.Q424L	ENST00000367120	NM_014002.3	424	cAg/cTg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085855	16085855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	87	336	0	ENST00000281043.3:c.1031C>A	p.Ala344Glu	p.A344E	ENST00000281043	NM_005378.4	344	gCa/gAa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469978	25469978	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	129	556	0	ENST00000264709.3:c.1064A>G	p.His355Arg	p.H355R	ENST00000264709	NM_175629.2	355	cAc/cGc																																																																														
ALK	238	MSKCC	GRCh37	2	29416428	29416428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	171	671	0	ENST00000389048.3:c.4525T>C	p.Ser1509Pro	p.S1509P	ENST00000389048	NM_004304.4	1509	Tcc/Ccc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010395	48010395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	137	488	0	ENST00000234420.5:c.23A>G	p.Tyr8Cys	p.Y8C	ENST00000234420	NM_000179.2	8	tAc/tGc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190717480	190717480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	175	381	1	ENST00000441310.2:c.799G>T	p.Val267Leu	p.V267L	ENST00000441310	NM_000534.4	267	Gta/Tta																																																																														
CASP8	841	MSKCC	GRCh37	2	202137360	202137360	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	171	292	0	ENST00000358485.4:c.589-1G>T		p.X197_splice	ENST00000358485	NM_001080125.1	197																																																																															
INHA	3623	MSKCC	GRCh37	2	220437293	220437293	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1369410899		P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	428	809	2	ENST00000243786.2:c.197G>T	p.Gly66Val	p.G66V	ENST00000243786	NM_002191.3	66	gGc/gTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47088113	47088113	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	72	315	0	ENST00000409792.3:c.6964-2A>G		p.X2322_splice	ENST00000409792	NM_014159.6	2322																																																																															
SETD2	29072	MSKCC	GRCh37	3	47103759	47103759	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	215	752	0	ENST00000409792.3:c.6187A>T	p.Arg2063Ter	p.R2063*	ENST00000409792	NM_014159.6	2063	Aga/Tga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438482	52438482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	108	552	0	ENST00000460680.1:c.1237A>T	p.Asn413Tyr	p.N413Y	ENST00000460680	NM_004656.3	413	Aac/Tac																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799755	72799755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	138	514	0	ENST00000325599.8:c.1414G>A	p.Gly472Ser	p.G472S	ENST00000325599	NM_018130.2	472	Ggc/Agc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430297	181430297	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	90	356	0	ENST00000325404.1:c.149T>A	p.Val50Glu	p.V50E	ENST00000325404	NM_003106.3	50	gTg/gAg																																																																														
KIT	3815	MSKCC	GRCh37	4	55589827	55589827	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	153	569	0	ENST00000288135.5:c.1309A>T	p.Thr437Ser	p.T437S	ENST00000288135	NM_000222.2	437	Aca/Tca																																																																														
KIT	3815	MSKCC	GRCh37	4	55599314	55599314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	112	459	0	ENST00000288135.5:c.2440G>T	p.Ala814Ser	p.A814S	ENST00000288135	NM_000222.2	814	Gcc/Tcc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955622	55955622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	150	571	0	ENST00000263923.4:c.3323G>A	p.Gly1108Glu	p.G1108E	ENST00000263923	NM_002253.2	1108	gGg/gAg																																																																														
KDR	3791	MSKCC	GRCh37	4	55961007	55961007	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	148	501	0	ENST00000263923.4:c.2933T>A	p.Val978Glu	p.V978E	ENST00000263923	NM_002253.2	978	gTg/gAg																																																																														
KDR	3791	MSKCC	GRCh37	4	55968192	55968192	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	132	607	0	ENST00000263923.4:c.2138T>A	p.Ile713Asn	p.I713N	ENST00000263923	NM_002253.2	713	aTt/aAt																																																																														
KDR	3791	MSKCC	GRCh37	4	55971098	55971098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201069157		P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	121	440	3	ENST00000263923.4:c.1699G>A	p.Val567Met	p.V567M	ENST00000263923	NM_002253.2	567	Gtg/Atg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217184	66217184	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	192	588	0	ENST00000273854.3:c.2431A>T	p.Asn811Tyr	p.N811Y	ENST00000273854	NM_004439.5	811	Aac/Tac																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143029257	143029257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	78	317	0	ENST00000262992.4:c.2363T>C	p.Met788Thr	p.M788T	ENST00000262992	NM_001101669.1	788	aTg/aCg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143129601	143129601	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	119	444	0	ENST00000262992.4:c.1049A>C	p.Gln350Pro	p.Q350P	ENST00000262992	NM_001101669.1	350	cAg/cCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187516912	187516912	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	156	587	0	ENST00000441802.2:c.13069A>G	p.Ser4357Gly	p.S4357G	ENST00000441802	NM_005245.3	4357	Agt/Ggt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524786	187524786	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	129	470	0	ENST00000441802.2:c.10894A>T	p.Arg3632Ter	p.R3632*	ENST00000441802	NM_005245.3	3632	Aga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1293626	1293626	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	81	390	0	ENST00000310581.5:c.1375T>C	p.Trp459Arg	p.W459R	ENST00000310581	NM_198253.2	459	Tgg/Cgg																																																																														
APC	324	MSKCC	GRCh37	5	112176394	112176394	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	87	352	0	ENST00000257430.4:c.5103A>T	p.Gln1701His	p.Q1701H	ENST00000257430	NM_000038.5	1701	caA/caT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176662936	176662936	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	93	357	0	ENST00000439151.2:c.3911A>C	p.Gln1304Pro	p.Q1304P	ENST00000439151	NM_022455.4	1304	cAg/cCg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038337	180038337	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1398985437		P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	121	467	2	ENST00000261937.6:c.3680C>A	p.Ala1227Asp	p.A1227D	ENST00000261937	NM_182925.4	1227	gCc/gAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052980	180052980	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866937901		P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	133	575	0	ENST00000261937.6:c.1310G>T	p.Arg437Leu	p.R437L	ENST00000261937	NM_182925.4	437	cGt/cTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181612	32181612	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	163	519	0	ENST00000375023.3:c.2173A>T	p.Thr725Ser	p.T725S	ENST00000375023	NM_004557.3	725	Acc/Tcc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190389	32190389	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	124	524	0	ENST00000375023.3:c.350A>G	p.Lys117Arg	p.K117R	ENST00000375023	NM_004557.3	117	aAg/aGg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066642	94066642	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1391562093		P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1252	222	850	0	ENST00000369303.4:c.1117A>C	p.Ser373Arg	p.S373R	ENST00000369303	NM_004440.3	373	Agt/Cgt																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519473	137519473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	82	380	1	ENST00000367739.4:c.1165C>A	p.Pro389Thr	p.P389T	ENST00000367739	NM_000416.2	389	Cct/Act																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129498	152129498	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	33	131	0	ENST00000206249.3:c.451A>T	p.Arg151Trp	p.R151W	ENST00000206249	NM_000125.3	151	Agg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962852	2962852	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	145	547	1	ENST00000396946.4:c.2056A>C	p.Asn686His	p.N686H	ENST00000396946	NM_032415.4	686	Aac/Cac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963909	2963909	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	193	696	0	ENST00000396946.4:c.1898T>A	p.Leu633Gln	p.L633Q	ENST00000396946	NM_032415.4	633	cTg/cAg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431643	6431643	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	80	305	0	ENST00000356142.4:c.196A>T	p.Arg66Ter	p.R66*	ENST00000356142	NM_018890.3	66	Aga/Tga																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367279	50367279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	88	342	0	ENST00000331340.3:c.86A>G	p.Glu29Gly	p.E29G	ENST00000331340	NM_006060.4	29	gAg/gGg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468217	50468217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	126	416	1	ENST00000331340.3:c.1452C>A	p.His484Gln	p.H484Q	ENST00000331340	NM_006060.4	484	caC/caA																																																																														
HGF	3082	MSKCC	GRCh37	7	81358981	81358981	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	169	576	0	ENST00000222390.5:c.980A>T	p.Gln327Leu	p.Q327L	ENST00000222390	NM_000601.4	327	cAg/cTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140534489	140534489	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	119	459	0	ENST00000288602.6:c.424A>T	p.Thr142Ser	p.T142S	ENST00000288602	NM_004333.4	142	Aca/Tca																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739459	145739459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	103	406	0	ENST00000428558.2:c.1911C>G	p.Phe637Leu	p.F637L	ENST00000428558	NM_004260.3	637	ttC/ttG																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518044	8518044	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	152	550	0	ENST00000356435.5:c.1347A>T	p.Gln449His	p.Q449H	ENST00000356435		449	caA/caT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971137	21971137	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	46	225	1	ENST00000304494.5:c.221A>T	p.Asp74Val	p.D74V	ENST00000304494	NM_000077.4	74	gAc/gTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971137	21971137	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	46	225	1	ENST00000304494.5:c.221A>T	p.Asp74Val	p.D74V	ENST00000304494	NM_000077.4	74	gAc/gTc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87325646	87325646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	159	555	0	ENST00000277120.3:c.523T>C	p.Tyr175His	p.Y175H	ENST00000277120		175	Tac/Cac																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87563504	87563504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	96	377	0	ENST00000277120.3:c.1892T>C	p.Met631Thr	p.M631T	ENST00000277120		631	aTg/aCg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401176	139401176	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs760966826		P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	104	420	0	ENST00000277541.6:c.3893G>C	p.Gly1298Ala	p.G1298A	ENST00000277541	NM_017617.3	1298	gGt/gCt																																																																														
RET	5979	MSKCC	GRCh37	10	43597853	43597853	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	184	817	0	ENST00000355710.3:c.401A>T	p.Glu134Val	p.E134V	ENST00000355710	NM_020975.4	134	gAg/gTg																																																																														
RET	5979	MSKCC	GRCh37	10	43610090	43610090	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	121	697	0	ENST00000355710.3:c.2042A>C	p.Gln681Pro	p.Q681P	ENST00000355710	NM_020975.4	681	cAg/cCg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672034	88672034	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs771444196		P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	61	236	0	ENST00000372037.3:c.568A>G	p.Asn190Asp	p.N190D	ENST00000372037	NM_004329.2	190	Aat/Gat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717616	89717616	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	111	395	0	ENST00000371953.3:c.641A>G	p.Gln214Arg	p.Q214R	ENST00000371953	NM_000314.4	214	cAg/cGg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180499	94180499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	154	532	1	ENST00000323929.3:c.1669G>A	p.Asp557Asn	p.D557N	ENST00000323929	NM_005591.3	557	Gac/Aac																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491471	18491471	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs754123698		P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	100	361	0	ENST00000266497.5:c.1384A>G	p.Arg462Gly	p.R462G	ENST00000266497		462	Aga/Gga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422897	49422897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	123	499	0	ENST00000301067.7:c.14198A>G	p.Glu4733Gly	p.E4733G	ENST00000301067	NM_003482.3	4733	gAg/gGg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864441	57864441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	219	740	0	ENST00000228682.2:c.1918A>G	p.Ser640Gly	p.S640G	ENST00000228682	NM_005269.2	640	Agt/Ggt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885271	111885271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	229	827	0	ENST00000341259.2:c.1159G>A	p.Gly387Arg	p.G387R	ENST00000341259	NM_005475.2	387	Gga/Aga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563389	21563389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	190	747	1	ENST00000382592.4:c.530G>C	p.Gly177Ala	p.G177A	ENST00000382592	NM_014572.2	177	gGc/gCc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28885839	28885839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	139	641	0	ENST00000282397.4:c.3523A>T	p.Ile1175Leu	p.I1175L	ENST00000282397	NM_002019.4	1175	Ata/Tta																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012444	29012444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	123	448	1	ENST00000282397.4:c.427C>A	p.Pro143Thr	p.P143T	ENST00000282397	NM_002019.4	143	Ccc/Acc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893220	32893220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	87	260	0	ENST00000380152.3:c.74G>T	p.Gly25Val	p.G25V	ENST00000380152		25	gGa/gTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907437	32907437	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	132	508	0	ENST00000380152.3:c.1822G>C	p.Asp608His	p.D608H	ENST00000380152		608	Gac/Cac																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133692	41133692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1344	225	886	0	ENST00000379561.5:c.1936A>G	p.Lys646Glu	p.K646E	ENST00000379561	NM_002015.3	646	Aag/Gag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519087	103519087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	91	415	0	ENST00000355739.4:c.2425G>T	p.Asp809Tyr	p.D809Y	ENST00000355739	NM_000123.3	809	Gat/Tat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557645	95557645	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	142	656	0	ENST00000343455.3:c.5422A>G	p.Met1808Val	p.M1808V	ENST00000343455	NM_177438.2	1808	Atg/Gtg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476396	88476396	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	102	368	0	ENST00000360948.2:c.1736T>A	p.Leu579Gln	p.L579Q	ENST00000360948	NM_001012338.2	579	cTg/cAg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396776	396776	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	143	566	0	ENST00000262320.3:c.250A>T	p.Lys84Ter	p.K84*	ENST00000262320	NM_003502.3	84	Aag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828180	3828180	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	97	276	0	ENST00000262367.5:c.1945G>T	p.Glu649Ter	p.E649*	ENST00000262367	NM_004380.2	649	Gaa/Taa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857941	9857941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	118	481	0	ENST00000330684.3:c.3460C>T	p.Pro1154Ser	p.P1154S	ENST00000330684	NM_001134407.1	1154	Ccc/Tcc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671705	67671705	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	121	463	0	ENST00000264010.4:c.2114A>T	p.Gln705Leu	p.Q705L	ENST00000264010	NM_006565.3	705	cAg/cTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16021214	16021214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	159	579	0	ENST00000268712.3:c.2043G>T	p.Gln681His	p.Q681H	ENST00000268712	NM_006311.3	681	caG/caT																																																																														
NF1	4763	MSKCC	GRCh37	17	29654515	29654515	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	137	494	0	ENST00000358273.4:c.5269-2A>T		p.X1757_splice	ENST00000358273	NM_001042492.2	1757																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264398	30264398	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	110	351	0	ENST00000322652.5:c.133A>T	p.Ser45Cys	p.S45C	ENST00000322652	NM_015355.2	45	Agc/Tgc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441551	40441551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	190	716	0	ENST00000345506.4:c.122A>T	p.Gln41Leu	p.Q41L	ENST00000345506	NM_003152.3	41	cAg/cTg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696719	47696719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	133	467	0	ENST00000347630.2:c.229G>C	p.Asp77His	p.D77H	ENST00000347630	NM_001007230.1	77	Gat/Cat																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119788	70119788	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	161	553	0	ENST00000245479.2:c.790A>T	p.Arg264Ter	p.R264*	ENST00000245479	NM_000346.3	264	Aga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120294	70120294	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1347	227	879	0	ENST00000245479.2:c.1296C>A	p.Tyr432Ter	p.Y432*	ENST00000245479	NM_000346.3	432	taC/taA																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120335	70120335	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1361	222	904	1	ENST00000245479.2:c.1337A>T	p.Gln446Leu	p.Q446L	ENST00000245479	NM_000346.3	446	cAg/cTg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39607466	39607466	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	160	538	0	ENST00000262039.4:c.1544A>G	p.Glu515Gly	p.E515G	ENST00000262039	NM_002647.2	515	gAg/gGg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45422919	45422919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	154	710	0	ENST00000262160.6:c.209G>T	p.Cys70Phe	p.C70F	ENST00000262160	NM_005901.5	70	tGt/tTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610180	10610180	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	166	599	0	ENST00000171111.5:c.530A>T	p.Gln177Leu	p.Q177L	ENST00000171111	NM_203500.1	177	cAg/cTg																																																																														
AXL	558	MSKCC	GRCh37	19	41745169	41745169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	169	640	1	ENST00000301178.4:c.1235C>A	p.Ala412Asp	p.A412D	ENST00000301178	NM_021913.4	412	gCt/gAt																																																																														
CIC	23152	MSKCC	GRCh37	19	42796319	42796319	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	178	721	1	ENST00000575354.2:c.2968A>T	p.Thr990Ser	p.T990S	ENST00000575354	NM_015125.3	990	Acc/Tcc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024824	31024824	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	310	667	0	ENST00000375687.4:c.4309A>T	p.Lys1437Ter	p.K1437*	ENST00000375687	NM_015338.5	1437	Aag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710629	40710629	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	168	380	0	ENST00000373198.4:c.4222T>A	p.Cys1408Ser	p.C1408S	ENST00000373198	NM_133170.3	1408	Tgt/Agt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733319	40733319	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	158	309	0	ENST00000373198.4:c.3487T>C	p.Cys1163Arg	p.C1163R	ENST00000373198	NM_133170.3	1163	Tgc/Cgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911497	39911497	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	216	435	0	ENST00000378444.4:c.5133A>T	p.Lys1711Asn	p.K1711N	ENST00000378444	NM_001123385.1	1711	aaA/aaT																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222716	53222716	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	156	298	0	ENST00000375401.3:c.4220A>C	p.Asp1407Ala	p.D1407A	ENST00000375401	NM_004187.3	1407	gAc/gCc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44935984	44935984	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	217	403	0	ENST00000377967.4:c.2746del	p.Asp916IlefsTer21	p.D916Ifs*21	ENST00000377967	NM_021140.2	915	ttG/tt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098635	47098636	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	146	598	0	ENST00000409792.3:c.6638_6639del	p.Ser2213TyrfsTer32	p.S2213Yfs*32	ENST00000409792	NM_014159.6	2213	tCT/t																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191492	185191492	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	101	348	0	ENST00000265026.3:c.2373del	p.Thr792ProfsTer32	p.T792Pfs*32	ENST00000265026	NM_004721.4	791	ggC/gg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343513	343514	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0013060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	133	605	0	ENST00000262320.3:c.2160_2161del	p.Arg720SerfsTer61	p.R720Sfs*61	ENST00000262320	NM_003502.3	720	agAGcc/agcc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121908585		P-0014074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	190	689	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
CDH1	999	MSKCC	GRCh37	16	68842603	68842603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	63	679	0	ENST00000261769.5:c.539C>T	p.Ser180Phe	p.S180F	ENST00000261769	NM_004360.3	180	tCc/tTc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288725	33288725	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	39	455	0	ENST00000374542.5:c.827A>G	p.Asn276Ser	p.N276S	ENST00000374542	NM_001141970.1	276	aAc/aGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577077	7577077	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs748891343		P-0014595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	393	858	0	ENST00000269305.4:c.861G>C	p.Glu287Asp	p.E287D	ENST00000269305	NM_001126112.2	287	gaG/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0014810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	79	516	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	84	358	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37666011	37666011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	87	312	0	ENST00000447079.4:c.2663A>G	p.Glu888Gly	p.E888G	ENST00000447079	NM_015083.1	888	gAg/gGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781504		P-0015058-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			259	231	736	0	ENST00000269305.4:c.314G>A	p.Gly105Asp	p.G105D	ENST00000269305	NM_001126112.2	105	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015058-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			101	49	156	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112176863	112176863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015058-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			112	89	296	0	ENST00000257430.4:c.5572C>T	p.Arg1858Ter	p.R1858*	ENST00000257430	NM_000038.5	1858	Cga/Tga																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46509479	46509479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139622524		P-0015058-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			412	330	366	3	ENST00000262741.5:c.1252C>T	p.Pro418Ser	p.P418S	ENST00000262741	NM_003629.3	418	Ccc/Tcc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229398	98229398	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0015058-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			324	73	220	0	ENST00000331920.6:c.2560G>T	p.Gly854Ter	p.G854*	ENST00000331920	NM_000264.3	854	Gga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	124	399	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0015875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	208	586	1	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0015875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	139	447	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120478168	120478168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	121	359	0	ENST00000256646.2:c.3582G>T	p.Gln1194His	p.Q1194H	ENST00000256646	NM_024408.3	1194	caG/caT																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2218080	2218080	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	259	705	0	ENST00000326181.6:c.142G>A	p.Asp48Asn	p.D48N	ENST00000326181	NM_032271.2	48	Gac/Aac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498422	89498422	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	74	283	1	ENST00000336596.2:c.2394C>A	p.Tyr798Ter	p.Y798*	ENST00000336596	NM_005233.5	798	taC/taA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCTC			P-0016886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	127	478	0	ENST00000275493.2:c.2315_2316insTCACAACCC	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCTCac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923065	39923065	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	222	587	0	ENST00000378444.4:c.3643A>T	p.Arg1215Ter	p.R1215*	ENST00000378444	NM_001123385.1	1215	Aga/Tga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53254033	53254085	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CTCCGGTGGCGGTAGGAAATCGTCGGACCCCGGCTCCATGGTGGGCCCGAGGT	CTCCGGTGGCGGTAGGAAATCGTCGGACCCCGGCTCCATGGTGGGCCCGAGGT	-			P-0016886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	102	497	0	ENST00000375401.3:c.-14_39del		p.*5*	ENST00000375401	NM_004187.3																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	137	581	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032474	12032474	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	81	356	0	ENST00000353533.5:c.910C>T	p.Arg304Ter	p.R304*	ENST00000353533	NM_003010.3	304	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909238		P-0017045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	86	436	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38064140	38064140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	160	537	0	ENST00000250448.2:c.38G>A	p.Ser13Asn	p.S13N	ENST00000250448	NM_004496.3	13	aGc/aAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530336	187530336	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0017045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	64	285	0	ENST00000441802.2:c.10206+1G>C		p.X3402_splice	ENST00000441802	NM_005245.3	3402																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	289	428	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200175951		P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	471	630	0	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625456	69625456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781938977		P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	443	599	0	ENST00000334134.2:c.337G>A	p.Ala113Thr	p.A113T	ENST00000334134	NM_005247.2	113	Gcc/Acc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	531	940	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
RET	5979	MSKCC	GRCh37	10	43622074	43622074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200989078		P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	410	594	0	ENST00000355710.3:c.3091G>A	p.Asp1031Asn	p.D1031N	ENST00000355710	NM_020975.4	1031	Gac/Aac																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117888	70117888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	352	420	1	ENST00000245479.2:c.356C>T	p.Ala119Val	p.A119V	ENST00000245479	NM_000346.3	119	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112128158	112128159	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	254	449	0	ENST00000257430.4:c.663dup	p.Gln222SerfsTer30	p.Q222Sfs*30	ENST00000257430	NM_000038.5	221	att/aTtt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372301	55372301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1721	320	404	1	ENST00000297316.4:c.991G>A	p.Gly331Arg	p.G331R	ENST00000297316	NM_022454.3	331	Gga/Aga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391112	139391112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	190	308	0	ENST00000277541.6:c.7079C>A	p.Ser2360Tyr	p.S2360Y	ENST00000277541	NM_017617.3	2360	tCc/tAc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913474		P-0017881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	179	945	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0017881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	57	394	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0017881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	127	736	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844776	156844776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1292790967		P-0017881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	223	844	1	ENST00000524377.1:c.1330C>T	p.Arg444Trp	p.R444W	ENST00000524377	NM_002529.3	444	Cgg/Tgg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270120	66270120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	176	798	0	ENST00000273854.3:c.1762G>T	p.Val588Leu	p.V588L	ENST00000273854	NM_004439.5	588	Gtg/Ttg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591133	67591154	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACGAGAGACCAATACTTGATGT	ACGAGAGACCAATACTTGATGT	-			P-0017881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	27	568	0	ENST00000274335.5:c.1727_1745+3del		p.X576_splice	ENST00000274335		576																																																																															
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs985033810		P-0020297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	23	683	2	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672142	88672142	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	188	721	0	ENST00000372037.3:c.675+1G>T		p.X225_splice	ENST00000372037	NM_004329.2	225																																																																															
SDHA	6389	MSKCC	GRCh37	5	233750	233750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs746165168		P-0020297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	78	444	0	ENST00000264932.6:c.1054C>T	p.Arg352Ter	p.R352*	ENST00000264932	NM_004168.2	352	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	67	591	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0020609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	68	633	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970896	21970900	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CTCAC	CTCAC	GTGA			P-0020609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	79	705	2	ENST00000304494.5:c.457+1_457+5delinsTCAC		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970896	21970900	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CTCAC	CTCAC	GTGA			P-0020609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	79	705	2	ENST00000304494.5:c.457+1_457+5delinsTCAC		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	1308	920	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PAK7	0	MSKCC	GRCh37	20	9543545	9543545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	195	697	0	ENST00000353224.5:c.1609C>T	p.His537Tyr	p.H537Y	ENST00000353224	NM_177990.2	537	Cac/Tac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945127	44945127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	135	339	0	ENST00000377967.4:c.3451A>G	p.Asn1151Asp	p.N1151D	ENST00000377967	NM_021140.2	1151	Aac/Gac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022143-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			130	922	799	0	ENST00000269305.4:c.757A>C	p.Thr253Pro	p.T253P	ENST00000269305	NM_001126112.2	253	Acc/Ccc																																																																														
APC	324	MSKCC	GRCh37	5	112176863	112176863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022143-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			56	175	569	1	ENST00000257430.4:c.5572C>T	p.Arg1858Ter	p.R1858*	ENST00000257430	NM_000038.5	1858	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41556727	41556727	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0022143-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			230	147	472	4	ENST00000263253.7:c.3671+1G>A		p.X1224_splice	ENST00000263253	NM_001429.3	1224																																																																															
HGF	3082	MSKCC	GRCh37	7	81335690	81335690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022143-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			939	325	663	1	ENST00000222390.5:c.1670G>T	p.Gly557Val	p.G557V	ENST00000222390	NM_000601.4	557	gGa/gTa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604648	48604649	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTGTTG			P-0022143-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			111	210	369	0	ENST00000342988.3:c.1471_1477dup	p.Asp493GlyfsTer3	p.D493Gfs*3	ENST00000342988	NM_005359.5	490	-/GGTGTTG																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349966	15349966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022143-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1307	572	829	2	ENST00000263377.2:c.3686G>A	p.Arg1229His	p.R1229H	ENST00000263377	NM_058243.2	1229	cGc/cAc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192454	138192454	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1324617507		P-0022143-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			418	155	380	0	ENST00000237289.4:c.90T>A	p.Phe30Leu	p.F30L	ENST00000237289	NM_001270507.1	30	ttT/ttA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	85	530	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	80	459	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	124	614	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	66	402	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074435	8074435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs980250925		P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	24	252	2	ENST00000377482.5:c.224C>T	p.Pro75Leu	p.P75L	ENST00000377482	NM_018948.3	75	cCg/cTg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275439	38275439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	125	676	0	ENST00000425967.3:c.1594G>T	p.Asp532Tyr	p.D532Y	ENST00000425967	NM_001174067.1	532	Gac/Tac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223466	53223466	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	70	596	0	ENST00000375401.3:c.3893C>G	p.Ser1298Cys	p.S1298C	ENST00000375401	NM_004187.3	1298	tCt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	307	666	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	410	647	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076745	72076745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	338	644	1	ENST00000357731.5:c.752C>T	p.Pro251Leu	p.P251L	ENST00000357731	NM_173808.2	251	cCg/cTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374875451		P-0024835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	319	433	1	ENST00000357368.4:c.3073G>A	p.Val1025Ile	p.V1025I	ENST00000357368	NM_002850.3	1025	Gtc/Atc																																																																														
SMO	6608	MSKCC	GRCh37	7	128829066	128829066	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs41304185		P-0024835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	13	9	0	ENST00000249373.3:c.74A>G	p.Asp25Gly	p.D25G	ENST00000249373	NM_005631.4	25	gAc/gGc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89816191	89816191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1957	388	580	0	ENST00000389301.3:c.3186del	p.Trp1063GlyfsTer14	p.W1063Gfs*14	ENST00000389301	NM_000135.2	1062	ggG/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0025449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	572	608	3	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913250		P-0025449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	194	379	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448631	89448631	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0025449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	142	453	0	ENST00000336596.2:c.1594+1G>C		p.X532_splice	ENST00000336596	NM_005233.5	532																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026141-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	2494	421	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591122	67591130	+	inframe_deletion	In_Frame_Del	DEL	AGCTGAGAA	AGCTGAGAA	-			P-0026141-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	47	255	0	ENST00000274335.5:c.1717_1725del	p.Leu573_Lys575del	p.L573_K575del	ENST00000274335		572	cAGCTGAGAAag/cag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528133	157528133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026141-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			771	46	461	0	ENST00000346085.5:c.5858G>A	p.Arg1953His	p.R1953H	ENST00000346085	NM_020732.3	1953	cGt/cAt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112380	115112380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374981272		P-0026141-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	125	360	0	ENST00000257566.3:c.1360C>T	p.Arg454Cys	p.R454C	ENST00000257566	NM_016569.3	454	Cgc/Tgc																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873761	35873761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026141-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	89	382	0	ENST00000216797.5:c.90C>A	p.His30Gln	p.H30Q	ENST00000216797	NM_020529.2	30	caC/caA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577101	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTC	CTCTC	-			P-0026141-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	481	596	0	ENST00000269305.4:c.837_841del	p.Arg280ProfsTer24	p.R280Pfs*24	ENST00000269305	NM_001126112.2	279	ggGAGAGac/ggac																																																																														
LYN	4067	MSKCC	GRCh37	8	56912043	56912043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026141-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			722	106	633	0	ENST00000519728.1:c.1271C>G	p.Ser424Cys	p.S424C	ENST00000519728	NM_002350.3	424	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0026468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	202	644	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0026468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	187	638	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0026468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	86	279	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916205	9916205	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs796052563		P-0026468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	104	505	0	ENST00000330684.3:c.2084G>A	p.Arg695Gln	p.R695Q	ENST00000330684	NM_001134407.1	695	cGg/cAg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31468128	31468128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	164	564	0	ENST00000344624.3:c.2284T>C	p.Phe762Leu	p.F762L	ENST00000344624		762	Ttc/Ctc																																																																														
APC	324	MSKCC	GRCh37	5	112175733	112175736	+	frameshift_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0026468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	86	356	0	ENST00000257430.4:c.4443_4446del	p.Leu1482GlnfsTer24	p.L1482Qfs*24	ENST00000257430	NM_000038.5	1481	gTTCTt/gt																																																																														
JUN	3725	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0027293-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			842	187	854	0	ENST00000371222.2:c.109_110del	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435201	18435202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027293-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	37	308	1	ENST00000266497.5:c.192dup	p.Val65CysfsTer16	p.V65Cfs*16	ENST00000266497		62	-/T																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0027293-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	206	696	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509850	187509850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027293-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			290	35	330	0	ENST00000441802.2:c.13663G>A	p.Val4555Met	p.V4555M	ENST00000441802	NM_005245.3	4555	Gtg/Atg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	165	530	1	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0028621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	133	254	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0028621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	219	507	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CASP8	841	MSKCC	GRCh37	2	202149778	202149778	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1242650624		P-0028621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	262	546	1	ENST00000358485.4:c.1219C>T	p.Leu407Phe	p.L407F	ENST00000358485	NM_001080125.1	407	Ctt/Ttt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371799	55371820	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCGCGCTGGGCCCCGAG	GGCGGCCGCGCTGGGCCCCGAG	-			P-0028621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	154	176	0	ENST00000297316.4:c.499_520del	p.Leu167TrpfsTer213	p.L167Wfs*213	ENST00000297316	NM_022454.3	163	caGGCGGCCGCGCTGGGCCCCGAG/ca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653859	89653861	+	inframe_deletion	In_Frame_Del	DEL	GTA	GTA	-			P-0028621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	316	472	0	ENST00000371953.3:c.160_162del	p.Val54del	p.V54del	ENST00000371953	NM_000314.4	53	GTA/-																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106727	27106727	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	229	521	0	ENST00000324856.7:c.6341del	p.Pro2114ArgfsTer21	p.P2114Rfs*21	ENST00000324856	NM_006015.4	2113	tCc/tc																																																																														
ATM	472	MSKCC	GRCh37	11	108196851	108196851	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	160	335	0	ENST00000278616.4:c.6874C>T	p.Gln2292Ter	p.Q2292*	ENST00000278616	NM_000051.3	2292	Cag/Tag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641204	3641204	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs983506423		P-0028621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	344	792	0	ENST00000294008.3:c.2435C>T	p.Ala812Val	p.A812V	ENST00000294008	NM_032444.2	812	gCc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928072	178928107	+	inframe_deletion	In_Frame_Del	DEL	TGGATTAGAAGATTTGCTGAACCCTATTGGTGTTAC	TGGATTAGAAGATTTGCTGAACCCTATTGGTGTTAC	-			P-0028621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	135	530	0	ENST00000263967.3:c.1355_1390del	p.Leu452_Gly463del	p.L452_G463del	ENST00000263967	NM_006218.2	450	caTGGATTAGAAGATTTGCTGAACCCTATTGGTGTTACt/cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs762846821		P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			770	226	826	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			429	92	441	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			734	191	683	0	ENST00000269305.4:c.645T>A	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agA																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			565	35	565	0	ENST00000342988.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000342988	NM_005359.5	352	gGa/gTa																																																																														
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			346	129	623	0	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458740	120458740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			454	61	584	0	ENST00000256646.2:c.6605C>G	p.Ser2202Cys	p.S2202C	ENST00000256646	NM_024408.3	2202	tCt/tGt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21630745	21630745	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			416	106	377	1	ENST00000421138.2:c.859T>A	p.Tyr287Asn	p.Y287N	ENST00000421138		287	Tat/Aat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197716	66197716	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs563678006		P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			532	52	483	0	ENST00000273854.3:c.2983G>T	p.Asp995Tyr	p.D995Y	ENST00000273854	NM_004439.5	995	Gac/Tac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647402	117647402	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs765553432		P-0028809-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			741	45	598	0	ENST00000368508.3:c.5542A>T	p.Ile1848Phe	p.I1848F	ENST00000368508	NM_002944.2	1848	Att/Ttt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	58	267	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	361	593	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
INHA	3623	MSKCC	GRCh37	2	220437230	220437230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs960266462		P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1233	291	1139	4	ENST00000243786.2:c.134C>T	p.Ala45Val	p.A45V	ENST00000243786	NM_002191.3	45	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	41	187	0	ENST00000257430.4:c.3807_3808del	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	342	634	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820411	59820411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	258	577	0	ENST00000259008.2:c.2342C>T	p.Thr781Ile	p.T781I	ENST00000259008	NM_032043.2	781	aCa/aTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281248	15281248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754875491		P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	523	997	1	ENST00000263388.2:c.5008G>A	p.Glu1670Lys	p.E1670K	ENST00000263388	NM_000435.2	1670	Gag/Aag																																																																														
ATR	545	MSKCC	GRCh37	3	142176579	142176579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	50	582	0	ENST00000350721.4:c.7522C>T	p.Pro2508Ser	p.P2508S	ENST00000350721	NM_001184.3	2508	Cca/Tca																																																																														
ATR	545	MSKCC	GRCh37	3	142255011	142255011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	66	323	0	ENST00000350721.4:c.3758A>G	p.Tyr1253Cys	p.Y1253C	ENST00000350721	NM_001184.3	1253	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112154907	112154907	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	152	612	0	ENST00000257430.4:c.1178C>A	p.Ser393Ter	p.S393*	ENST00000257430	NM_000038.5	393	tCa/tAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	129	330	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112137048	112137048	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	184	363	1	ENST00000257430.4:c.802G>T	p.Glu268Ter	p.E268*	ENST00000257430	NM_000038.5	268	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	219	586	1	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	34	172	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115263288	115263288	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	179	491	0	ENST00000438362.2:c.2062A>T	p.Lys688Ter	p.K688*	ENST00000438362	NM_001242891.1	688	Aaa/Taa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753779	42753779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1362941547		P-0031052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	92	705	0	ENST00000222329.4:c.485C>T	p.Pro162Leu	p.P162L	ENST00000222329	NM_006494.2	162	cCa/cTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55955052	55955052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	152	346	1	ENST00000263923.4:c.3493C>A	p.Gln1165Lys	p.Q1165K	ENST00000263923	NM_002253.2	1165	Caa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	32	522	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	35	411	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	33	410	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138642	55138642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143344944		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	58	518	0	ENST00000257290.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000257290	NM_006206.4	440	aCg/aTg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348128	348128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs748975424		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	48	636	2	ENST00000262320.3:c.1378C>T	p.Arg460Trp	p.R460W	ENST00000262320	NM_003502.3	460	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	43	598	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	472142	472142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1309760726		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	43	489	1	ENST00000399788.2:c.659G>A	p.Arg220His	p.R220H	ENST00000399788	NM_001042603.1	220	cGt/cAt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98221936	98221936	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1064794260		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	51	479	0	ENST00000331920.6:c.2833C>T	p.Arg945Ter	p.R945*	ENST00000331920	NM_000264.3	945	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	62	552	1	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	47	446	0	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9624936	9624936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760501160		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	36	424	0	ENST00000353224.5:c.41C>T	p.Pro14Leu	p.P14L	ENST00000353224	NM_177990.2	14	cCg/cTg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	43	496	3	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49924822	49924822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202007332		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	66	739	1	ENST00000296474.3:c.4121G>A	p.Arg1374His	p.R1374H	ENST00000296474	NM_002447.2	1374	cGt/cAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106197564	106197564	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754215085		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	45	457	0	ENST00000380013.4:c.5897G>A	p.Arg1966His	p.R1966H	ENST00000380013	NM_001127208.2	1966	cGt/cAt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656969	47656969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779075		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	59	374	0	ENST00000233146.2:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000233146	NM_000251.2	389	Cga/Tga																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111886074	111886074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs72650662		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	59	541	0	ENST00000341259.2:c.1696C>T	p.Arg566Trp	p.R566W	ENST00000341259	NM_005475.2	566	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	67	706	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416416	49416416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs398123734		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	47	476	0	ENST00000301067.7:c.16295G>A	p.Arg5432Gln	p.R5432Q	ENST00000301067	NM_003482.3	5432	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	63	610	3	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																														
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	32	567	2	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459167	120459167	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746551843		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	58	628	0	ENST00000256646.2:c.6178C>T	p.Arg2060Cys	p.R2060C	ENST00000256646	NM_024408.3	2060	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210704	5210704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766174955		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	52	631	2	ENST00000357368.4:c.5347C>T	p.Arg1783Trp	p.R1783W	ENST00000357368	NM_002850.3	1783	Cgg/Tgg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107713	30107713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1160777726		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	55	520	0	ENST00000331968.5:c.967G>A	p.Glu323Lys	p.E323K	ENST00000331968	NM_002742.2	323	Gaa/Aaa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838096	89838096	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1054636249		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	57	471	0	ENST00000389301.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000389301	NM_000135.2	714	cGg/cAg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533668	63533668	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773033390		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	43	568	0	ENST00000307078.5:c.1486G>A	p.Ala496Thr	p.A496T	ENST00000307078	NM_004655.3	496	Gcc/Acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829115	72829115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	39	505	0	ENST00000268489.5:c.7466del	p.Pro2489LeufsTer39	p.P2489Lfs*39	ENST00000268489	NM_006885.3	2489	cCt/ct																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317159	11317159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	57	629	0	ENST00000361445.4:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000361445	NM_004958.3	112	cGg/cAg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138934	64138934	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	27	313	0	ENST00000334205.4:c.2305del	p.Leu769CysfsTer15	p.L769Cfs*15	ENST00000334205	NM_003942.2	767	ggC/gg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456418	99456418	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138992740		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	51	594	0	ENST00000268035.6:c.1735G>A	p.Val579Ile	p.V579I	ENST00000268035	NM_000875.3	579	Gtt/Att																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096258	2096258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	67	687	0	ENST00000219066.1:c.249G>T	p.Lys83Asn	p.K83N	ENST00000219066	NM_002528.5	83	aaG/aaT																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838148	89838148	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376888740		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	58	602	1	ENST00000389301.3:c.2089G>A	p.Val697Ile	p.V697I	ENST00000389301	NM_000135.2	697	Gtt/Att																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78923324	78923324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759681695		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	40	587	0	ENST00000306801.3:c.3347C>T	p.Ser1116Leu	p.S1116L	ENST00000306801	NM_020761.2	1116	tCg/tTg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39613899	39613899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775480477		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	23	401	0	ENST00000262039.4:c.1817C>T	p.Pro606Leu	p.P606L	ENST00000262039	NM_002647.2	606	cCg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224506	36224506	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752337579		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	83	839	2	ENST00000222270.7:c.6968G>A	p.Arg2323His	p.R2323H	ENST00000222270	NM_014727.1	2323	cGt/cAt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182213	99182213	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs984538193		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	54	534	0	ENST00000074304.5:c.2278G>A	p.Val760Ile	p.V760I	ENST00000074304	NM_001134224.1	760	Gtc/Atc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714412	40714412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	53	513	0	ENST00000373198.4:c.3985G>A	p.Glu1329Lys	p.E1329K	ENST00000373198	NM_133170.3	1329	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249511	153249511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	46	544	0	ENST00000281708.4:c.1267G>A	p.Gly423Arg	p.G423R	ENST00000281708	NM_033632.3	423	Gga/Aga																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435696	149435696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1214473761		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	47	574	0	ENST00000286301.3:c.2447G>A	p.Arg816His	p.R816H	ENST00000286301	NM_005211.3	816	cGc/cAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923850	39923850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs760373288		P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	44	564	0	ENST00000378444.4:c.3241G>A	p.Glu1081Lys	p.E1081K	ENST00000378444	NM_001123385.1	1081	Gag/Aag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123229221	123229221	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0031211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	23	343	0	ENST00000218089.9:c.3706-1G>A		p.X1236_splice	ENST00000218089	NM_001042749.1	1236																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	449	594	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0031217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	311	878	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	219	573	0	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	42054540	42054541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	121	502	0	ENST00000219905.7:c.7731dup	p.Asp2578ArgfsTer45	p.D2578Rfs*45	ENST00000219905	NM_001164273.1	2575	aga/agAa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302646	15302646	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	400	897	0	ENST00000263388.2:c.712G>C	p.Asp238His	p.D238H	ENST00000263388	NM_000435.2	238	Gac/Cac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302867	15302867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	428	966	0	ENST00000263388.2:c.583G>A	p.Glu195Lys	p.E195K	ENST00000263388	NM_000435.2	195	Gag/Aag																																																																														
AXL	558	MSKCC	GRCh37	19	41744494	41744494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	72	856	1	ENST00000301178.4:c.1114C>A	p.Gln372Lys	p.Q372K	ENST00000301178	NM_021913.4	372	Caa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248453	212248453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	26	474	0	ENST00000342788.4:c.3814G>T	p.Gly1272Trp	p.G1272W	ENST00000342788	NM_005235.2	1272	Ggg/Tgg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659941	227659941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	63	900	0	ENST00000305123.5:c.3514G>T	p.Gly1172Cys	p.G1172C	ENST00000305123	NM_005544.2	1172	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	360	684	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	129	376	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																														
B2M	567	MSKCC	GRCh37	15	45003812	45003812	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	94	389	0	ENST00000558401.1:c.67+1G>A		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
SETD8	0	MSKCC	GRCh37	12	123889560	123889560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	34	156	0	ENST00000330479.4:c.787G>A	p.Ala263Thr	p.A263T	ENST00000330479	NM_020382.3	263	Gca/Aca																																																																														
B2M	567	MSKCC	GRCh37	15	45007761	45007761	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	25	397	0	ENST00000558401.1:c.208G>T	p.Glu70Ter	p.E70*	ENST00000558401	NM_004048.2	70	Gag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256204	41256204	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	318	445	0	ENST00000357654.3:c.376C>G	p.Gln126Glu	p.Q126E	ENST00000357654	NM_007294.3	126	Caa/Gaa																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656915	45656915	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs558943057		P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	123	729	1	ENST00000407780.3:c.241C>T	p.Arg81Trp	p.R81W	ENST00000407780	NM_001283052.1	81	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175391	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	268	301	0	ENST00000257430.4:c.4100dup	p.Thr1368AspfsTer7	p.T1368Dfs*7	ENST00000257430	NM_000038.5	1367	cag/cAag																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149513452	149513452	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757668250		P-0031282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	153	603	0	ENST00000261799.4:c.751C>T	p.Arg251Cys	p.R251C	ENST00000261799	NM_002609.3	251	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0031347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	20	566	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519966		P-0031810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	24	588	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193121556	193121556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	21	331	0	ENST00000367435.3:c.954G>A	p.Met318Ile	p.M318I	ENST00000367435	NM_024529.4	318	atG/atA																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489526	40489526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	41	604	0	ENST00000264657.5:c.724G>A	p.Asp242Asn	p.D242N	ENST00000264657	NM_139276.2	242	Gac/Aac																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0031856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			336	316	278	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0031856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			147	101	188	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs137852578		P-0031856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	636	119	2	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149457764	149457764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	197	344	0	ENST00000286301.3:c.640C>T	p.Arg214Trp	p.R214W	ENST00000286301	NM_005211.3	214	Cgg/Tgg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519971		P-0031856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	119	277	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	115	667	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	279	922	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	67	122	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0031918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	212	388	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767342		P-0031918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	47	134	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971204	21971208	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TGACC	TGACC	-			P-0031918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	63	170	0	ENST00000304494.5:c.151-1_154del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971204	21971208	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TGACC	TGACC	-			P-0031918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	63	170	0	ENST00000304494.5:c.151-1_154del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971204	21971208	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TGACC	TGACC	-			P-0031918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	63	170	0	ENST00000304494.5:c.151-1_154del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
ALK	238	MSKCC	GRCh37	2	29455298	29455298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376091121		P-0031918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	65	252	0	ENST00000389048.3:c.2504C>T	p.Pro835Leu	p.P835L	ENST00000389048	NM_004304.4	835	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	100	188	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	126	376	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	125	396	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2185868	2185868	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	192	523	1	ENST00000398665.3:c.140A>T	p.Glu47Val	p.E47V	ENST00000398665	NM_032482.2	47	gAa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	131	377	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250823	153250823	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1159697496		P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	83	258	0	ENST00000281708.4:c.1236+1G>A		p.X412_splice	ENST00000281708	NM_033632.3	412																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63554192	63554192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	180	541	0	ENST00000307078.5:c.547G>A	p.Glu183Lys	p.E183K	ENST00000307078	NM_004655.3	183	Gag/Aag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120504	70120505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TACA			P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	172	663	0	ENST00000245479.2:c.1507_1510dup	p.Thr504IlefsTer75	p.T504Ifs*75	ENST00000245479	NM_000346.3	502	-/TACA																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72897475	72897475	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	48	181	0	ENST00000325599.8:c.17T>G	p.Phe6Cys	p.F6C	ENST00000325599	NM_018130.2	6	tTc/tGc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662441	117662441	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs761904834		P-0032081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	118	396	0	ENST00000368508.3:c.4936A>G	p.Thr1646Ala	p.T1646A	ENST00000368508	NM_002944.2	1646	Aca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	189	459	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0032287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	189	388	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	49	276	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0032287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	250	685	0	ENST00000269305.4:c.266_267dup	p.Ser90ProfsTer34	p.S90Pfs*34	ENST00000269305	NM_001126112.2	89	-/CC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165141	47165141	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372869995		P-0032287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	53	365	0	ENST00000409792.3:c.985C>T	p.Arg329Trp	p.R329W	ENST00000409792	NM_014159.6	329	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151917629	151917629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	151	644	0	ENST00000262189.6:c.3691G>T	p.Gly1231Cys	p.G1231C	ENST00000262189	NM_170606.2	1231	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0032339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	335	603	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431420	49431430	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGAGCTCTC	AGTGAGCTCTC	GGAG			P-0032339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	319	576	1	ENST00000301067.7:c.9709_9719delinsCTCC	p.Glu3237LeufsTer3	p.E3237Lfs*3	ENST00000301067	NM_003482.3	3237	GAGAGCTCACTg/CTCCg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291059	10291059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	570	502	0	ENST00000340748.4:c.412C>T	p.Pro138Ser	p.P138S	ENST00000340748		138	Ccc/Tcc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545762	106545762	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	284	448	0	ENST00000359195.3:c.3239G>A	p.Trp1080Ter	p.W1080*	ENST00000359195	NM_002649.2	1080	tGg/tAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152055681	152055681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	115	515	0	ENST00000262189.6:c.241G>C	p.Val81Leu	p.V81L	ENST00000262189	NM_170606.2	81	Gtg/Ctg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845972	151845972	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	105	442	0	ENST00000262189.6:c.13040del	p.Pro4347ArgfsTer9	p.P4347Rfs*9	ENST00000262189	NM_170606.2	4347	cCg/cg																																																																														
EP300	2033	MSKCC	GRCh37	22	41566488	41566488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	150	434	0	ENST00000263253.7:c.4365G>T	p.Gln1455His	p.Q1455H	ENST00000263253	NM_001429.3	1455	caG/caT																																																																														
BARD1	580	MSKCC	GRCh37	2	215645739	215645739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	158	636	1	ENST00000260947.4:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000260947	NM_000465.2	287	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448705	49448705	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	158	409	0	ENST00000301067.7:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000301067	NM_003482.3	52	Cag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857187	9857187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	68	418	1	ENST00000330684.3:c.4214T>C	p.Leu1405Ser	p.L1405S	ENST00000330684	NM_001134407.1	1405	tTg/tCg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	319	788	0	ENST00000171111.5:c.1408C>A	p.Arg470Ser	p.R470S	ENST00000171111	NM_203500.1	470	Cgt/Agt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629328	187629328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	102	749	0	ENST00000441802.2:c.1654G>T	p.Glu552Ter	p.E552*	ENST00000441802	NM_005245.3	552	Gaa/Taa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324628	31324628	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs151341114		P-0032524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	38	171	0	ENST00000412585.2:c.180C>G	p.Phe60Leu	p.F60L	ENST00000412585	NM_005514.6	60	ttC/ttG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152009027	152009027	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	172	264	0	ENST00000262189.6:c.595C>T	p.Arg199Ter	p.R199*	ENST00000262189	NM_170606.2	199	Cga/Tga																																																																														
PREX2	80243	MSKCC	GRCh37	8	68972948	68972948	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	182	416	0	ENST00000288368.4:c.1273A>G	p.Ile425Val	p.I425V	ENST00000288368	NM_024870.2	425	Att/Gtt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401333	139401334	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0032524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1315	108	884	0	ENST00000277541.6:c.3735_3736delinsTT	p.Asp1246Tyr	p.D1246Y	ENST00000277541	NM_017617.3	1245	gtGGac/gtTTac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	222	698	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0032597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	243	849	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
TET1	80312	MSKCC	GRCh37	10	70451329	70451329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	131	637	0	ENST00000373644.4:c.6169C>A	p.Pro2057Thr	p.P2057T	ENST00000373644	NM_030625.2	2057	Ccc/Acc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32936781	32936781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	145	463	0	ENST00000380152.3:c.7927G>A	p.Ala2643Thr	p.A2643T	ENST00000380152		2643	Gct/Act																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41265805	41266404	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATG	CTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATG	-			P-0032597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	99	86	0	ENST00000349496.5:c.14-208_242-37del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
E2F3	1871	MSKCC	GRCh37	6	20481599	20481599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	71	282	0	ENST00000346618.3:c.668A>G	p.Asn223Ser	p.N223S	ENST00000346618	NM_001949.4	223	aAc/aGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	20	530	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0033856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	147	356	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
APC	324	MSKCC	GRCh37	5	112175141	112175141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	180	212	0	ENST00000257430.4:c.3850G>T	p.Glu1284Ter	p.E1284*	ENST00000257430	NM_000038.5	1284	Gaa/Taa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372173	55372173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	79	312	0	ENST00000297316.4:c.863C>T	p.Ala288Val	p.A288V	ENST00000297316	NM_022454.3	288	gCg/gTg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981565	201981565	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs878935651		P-0033856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	98	639	0	ENST00000359651.3:c.478+1G>A		p.X160_splice	ENST00000359651		160																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119086	70119086	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	122	350	0	ENST00000245479.2:c.658G>T	p.Glu220Ter	p.E220*	ENST00000245479	NM_000346.3	220	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576863	7576875	+	frameshift_variant	Frame_Shift_Del	DEL	AAATATTCTCCAT	AAATATTCTCCAT	CAC			P-0033879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	77	957	2	ENST00000269305.4:c.971_983delinsGTG	p.Asp324GlyfsTer18	p.D324Gfs*18	ENST00000269305	NM_001126112.2	324	gATGGAGAATATTTc/gGTGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519990		P-0034128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	134	436	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0034128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	14	539	2	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105743	27105743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	75	342	0	ENST00000324856.7:c.5354A>G	p.Asp1785Gly	p.D1785G	ENST00000324856	NM_006015.4	1785	gAt/gGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29670076	29670076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	101	448	0	ENST00000358273.4:c.7112G>T	p.Cys2371Phe	p.C2371F	ENST00000358273	NM_001042492.2	2371	tGc/tTc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59934500	59934500	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	123	421	2	ENST00000259008.2:c.298A>T	p.Met100Leu	p.M100L	ENST00000259008	NM_032043.2	100	Atg/Ttg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662789	117662789	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	51	214	0	ENST00000368508.3:c.4676A>T	p.Glu1559Val	p.E1559V	ENST00000368508	NM_002944.2	1559	gAg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101054	27101054	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	324	577	1	ENST00000324856.7:c.4336C>T	p.Arg1446Ter	p.R1446*	ENST00000324856	NM_006015.4	1446	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T	rs121913468		P-0034369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	5098	399	8	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691187		P-0034369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	236	360	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691187		P-0034369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	236	360	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944244	81944244	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769887285		P-0034369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	138	558	1	ENST00000359376.3:c.1853G>A	p.Arg618His	p.R618H	ENST00000359376	NM_002661.3	618	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579333	7579350	+	inframe_deletion	In_Frame_Del	DEL	TGTCCCAGAATGCAAGAA	TGTCCCAGAATGCAAGAA	-			P-0034369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	243	477	1	ENST00000269305.4:c.337_354del	p.Phe113_Thr118del	p.F113_T118del	ENST00000269305	NM_001126112.2	113	TTCTTGCATTCTGGGACA/-																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619347	37619358	+	inframe_deletion	In_Frame_Del	DEL	TCTGAGTCGGAG	TCTGAGTCGGAG	-			P-0034369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	153	342	0	ENST00000447079.4:c.1025_1036del	p.Leu342_Ser345del	p.L342_S345del	ENST00000447079	NM_015083.1	341	tcTCTGAGTCGGAGt/tct																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554267	63554267	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0034369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	205	689	0	ENST00000307078.5:c.472A>T	p.Arg158Ter	p.R158*	ENST00000307078	NM_004655.3	158	Aga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	234	624	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110319	3110319	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	198	511	0	ENST00000078429.4:c.309C>A	p.Tyr103Ter	p.Y103*	ENST00000078429	NM_002067.2	103	taC/taA																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0034872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	95	547	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577493	7577497	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCTGA	CCTGA	-			P-0034872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	246	544	0	ENST00000269305.4:c.782+2_782+6del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
YES1	7525	MSKCC	GRCh37	18	751795	751795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	50	291	0	ENST00000314574.4:c.281C>A	p.Thr94Asn	p.T94N	ENST00000314574	NM_005433.3	94	aCt/aAt																																																																														
YES1	7525	MSKCC	GRCh37	18	751801	751801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	52	303	0	ENST00000314574.4:c.275G>T	p.Gly92Val	p.G92V	ENST00000314574	NM_005433.3	92	gGt/gTt																																																																														
YES1	7525	MSKCC	GRCh37	18	756706	756706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	121	493	0	ENST00000314574.4:c.122C>T	p.Pro41Leu	p.P41L	ENST00000314574	NM_005433.3	41	cCa/cTa																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0035441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	276	514	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
AGO2	27161	MSKCC	GRCh37	8	141595329	141595329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	376	827	0	ENST00000220592.5:c.104G>C	p.Gly35Ala	p.G35A	ENST00000220592	NM_012154.3	35	gGg/gCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	9	364	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797160	45797160	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs587780744		P-0035775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	160	786	0	ENST00000372115.3:c.1213G>C	p.Ala405Pro	p.A405P	ENST00000372115	NM_001048171.1	405	Gcc/Ccc																																																																														
MGA	23269	MSKCC	GRCh37	15	42005628	42005628	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	194	360	0	ENST00000219905.7:c.3364G>T	p.Glu1122Ter	p.E1122*	ENST00000219905	NM_001164273.1	1122	Gaa/Taa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816431	32816431	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs967210854		P-0035775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	369	679	0	ENST00000354258.4:c.1744C>T	p.Gln582Ter	p.Q582*	ENST00000354258	NM_000593.5	582	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	45	498	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0036317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	31	346	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448592	89448592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs543425684		P-0036317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			681	52	529	0	ENST00000336596.2:c.1556C>T	p.Thr519Met	p.T519M	ENST00000336596	NM_005233.5	519	aCg/aTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89712007	89712007	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	32	259	0	ENST00000371953.3:c.625G>T	p.Gly209Ter	p.G209*	ENST00000371953	NM_000314.4	209	Gga/Tga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729604	41729604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	41	500	1	ENST00000242208.4:c.925C>T	p.Arg309Trp	p.R309W	ENST00000242208	NM_002192.2	309	Cgg/Tgg																																																																														
CCND1	595	MSKCC	GRCh37	11	69466026	69466028	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0036317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			676	46	705	0	ENST00000227507.2:c.866_868del	p.Asp289del	p.D289del	ENST00000227507	NM_053056.2	288	acCGAc/acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828579	72828579	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			874	52	755	1	ENST00000268489.5:c.8002C>T	p.Arg2668Ter	p.R2668*	ENST00000268489	NM_006885.3	2668	Cga/Tga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944308	81944308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			518	30	519	0	ENST00000359376.3:c.1921del	p.His641ThrfsTer11	p.H641Tfs*11	ENST00000359376	NM_002661.3	639	aaC/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653846	89653846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	44	443	0	ENST00000371953.3:c.144C>A	p.Asn48Lys	p.N48K	ENST00000371953	NM_000314.4	48	aaC/aaA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057838	27057839	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0036317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			809	61	789	0	ENST00000324856.7:c.1548_1549dup	p.Pro517LeufsTer103	p.P517Lfs*103	ENST00000324856	NM_006015.4	516	cct/cCTct																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63530133	63530133	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			694	50	507	0	ENST00000307078.5:c.2302T>A	p.Tyr768Asn	p.Y768N	ENST00000307078	NM_004655.3	768	Tac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178941918	178941918	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	43	457	0	ENST00000263967.3:c.2237A>T	p.Asp746Val	p.D746V	ENST00000263967	NM_006218.2	746	gAt/gTt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468251	50468251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs548117828		P-0036317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	32	541	1	ENST00000331340.3:c.1486G>A	p.Gly496Ser	p.G496S	ENST00000331340	NM_006060.4	496	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	56	176	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0036767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	103	465	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs763964405		P-0036767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	50	271	0	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0036767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	27	160	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0036767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	34	125	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29652957	29652957	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs775874538		P-0036767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	59	220	0	ENST00000358273.4:c.4955A>G	p.Asn1652Ser	p.N1652S	ENST00000358273	NM_001042492.2	1652	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7573991	7573991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	635	775	0	ENST00000269305.4:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	346	Gag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521975	157521975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144424476		P-0036903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	154	467	1	ENST00000346085.5:c.4247G>A	p.Arg1416His	p.R1416H	ENST00000346085	NM_020732.3	1416	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432409	49432412	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0036903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	394	787	0	ENST00000301067.7:c.8727_8730del	p.Ser2910ArgfsTer32	p.S2910Rfs*32	ENST00000301067	NM_003482.3	2909	gtAAGT/gt																																																																														
MITF	4286	MSKCC	GRCh37	3	70005611	70005611	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs104893746		P-0036903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	205	391	2	ENST00000352241.4:c.943C>T	p.Arg315Ter	p.R315*	ENST00000352241	NM_198159.2	315	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	260	479	0				ENST00000310581	NM_198253.2																																																																																
SRSF2	6427	MSKCC	GRCh37	17	74732533	74732533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	44	134	0	ENST00000359995.5:c.376C>T	p.Arg126Cys	p.R126C	ENST00000359995	NM_001195427.1	126	Cgc/Tgc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404765	404765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	150	551	0	ENST00000399788.2:c.4429G>A	p.Glu1477Lys	p.E1477K	ENST00000399788	NM_001042603.1	1477	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643774	52643808	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TTTCCATGTCCATGGGCTTTTTAATAGTCAGATAG	TTTCCATGTCCATGGGCTTTTTAATAGTCAGATAG	-			P-0036903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	116	730	0	ENST00000394830.3:c.2088_2122del	p.Tyr696Ter	p.Y696*	ENST00000394830	NM_018313.4	696	taCTATCTGACTATTAAAAAGCCCATGGACATGGAAAaa/taaa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1961431	1961431	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	326	563	0	ENST00000382891.5:c.3219A>T	p.Lys1073Asn	p.K1073N	ENST00000382891	NM_133335.3	1073	aaA/aaT																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748194	41748194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	70	648	1	ENST00000226382.2:c.575C>A	p.Pro192Gln	p.P192Q	ENST00000226382	NM_003924.3	192	cCg/cAg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100088	157100088	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768271181		P-0036903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	39	56	0	ENST00000346085.5:c.1025C>T	p.Ala342Val	p.A342V	ENST00000346085	NM_020732.3	342	gCg/gTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179180	123179180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	156	303	0	ENST00000218089.9:c.629C>T	p.Ser210Leu	p.S210L	ENST00000218089	NM_001042749.1	210	tCa/tTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711990	89711990	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	126	428	0	ENST00000371953.3:c.609del	p.Pro204GlnfsTer17	p.P204Qfs*17	ENST00000371953	NM_000314.4	203	aTt/at																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279929	18279929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	327	665	0	ENST00000222254.8:c.2012A>G	p.Tyr671Cys	p.Y671C	ENST00000222254	NM_005027.3	671	tAc/tGc																																																																														
MED12	9968	MSKCC	GRCh37	X	70354234	70354234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	129	685	0	ENST00000374080.3:c.4645C>T	p.Arg1549Cys	p.R1549C	ENST00000374080		1549	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1131691023		P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	376	733	0	ENST00000269305.4:c.470T>C	p.Val157Ala	p.V157A	ENST00000269305	NM_001126112.2	157	gTc/gCc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943359	71943359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775327646		P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	142	646	0	ENST00000298229.2:c.1691C>T	p.Ser564Leu	p.S564L	ENST00000298229	NM_001567.3	564	tCg/tTg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782156	9782156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	129	616	0	ENST00000377346.4:c.2179G>T	p.Ala727Ser	p.A727S	ENST00000377346	NM_005026.3	727	Gcc/Tcc																																																																														
CCND1	595	MSKCC	GRCh37	11	69462854	69462854	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	263	682	0	ENST00000227507.2:c.667T>G	p.Phe223Val	p.F223V	ENST00000227507	NM_053056.2	223	Ttc/Gtc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94212852	94212852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	40	489	0	ENST00000323929.3:c.390C>G	p.Asp130Glu	p.D130E	ENST00000323929	NM_005591.3	130	gaC/gaG																																																																														
RB1	5925	MSKCC	GRCh37	13	49039143	49039143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	39	270	0	ENST00000267163.4:c.2221C>A	p.Arg741Ser	p.R741S	ENST00000267163	NM_000321.2	741	Cgt/Agt																																																																														
CIC	23152	MSKCC	GRCh37	19	42794890	42794890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	58	629	0	ENST00000575354.2:c.1970A>C	p.Tyr657Ser	p.Y657S	ENST00000575354	NM_015125.3	657	tAt/tCt																																																																														
AURKA	6790	MSKCC	GRCh37	20	54945316	54945316	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	57	335	0	ENST00000312783.6:c.1110G>C	p.Gln370His	p.Q370H	ENST00000312783	NM_198436.1	370	caG/caC																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668656	52668656	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	123	572	0	ENST00000394830.3:c.1263C>G	p.Tyr421Ter	p.Y421*	ENST00000394830	NM_018313.4	421	taC/taG																																																																														
APC	324	MSKCC	GRCh37	5	112175407	112175407	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	134	373	0	ENST00000257430.4:c.4116del	p.Pro1373LeufsTer42	p.P1373Lfs*42	ENST00000257430	NM_000038.5	1372	ccA/cc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370847	55370847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	87	370	2	ENST00000297316.4:c.149C>T	p.Ala50Val	p.A50V	ENST00000297316	NM_022454.3	50	gCg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	217	672	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518073	69518074	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0037045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	413	890	0	ENST00000294312.3:c.291_292del	p.Val98AlafsTer79	p.V98Afs*79	ENST00000294312	NM_005117.2	97	agCGtg/agtg																																																																														
CCND2	894	MSKCC	GRCh37	12	4409096	4409096	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs771085906		P-0037045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	473	494	0	ENST00000261254.3:c.791A>G	p.Asp264Gly	p.D264G	ENST00000261254	NM_001759.3	264	gAc/gGc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350587	89350587	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	478	972	0	ENST00000301030.4:c.2363C>G	p.Ser788Ter	p.S788*	ENST00000301030	NM_001256183.1	788	tCa/tGa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913641	32913641	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs893978143		P-0037086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	54	280	0	ENST00000380152.3:c.5149G>A	p.Glu1717Lys	p.E1717K	ENST00000380152		1717	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023612	31023612	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	71	426	0	ENST00000375687.4:c.3097G>T	p.Glu1033Ter	p.E1033*	ENST00000375687	NM_015338.5	1033	Gag/Tag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713522	30713522	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	50	355	0	ENST00000359013.4:c.922G>T	p.Glu308Ter	p.E308*	ENST00000359013	NM_001024847.2	308	Gag/Tag																																																																														
SDHB	6390	MSKCC	GRCh37	1	17350557	17350557	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1045881797		P-0037086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	65	314	0	ENST00000375499.3:c.553G>A	p.Glu185Lys	p.E185K	ENST00000375499	NM_003000.2	185	Gag/Aag																																																																														
AXL	558	MSKCC	GRCh37	19	41726618	41726618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	77	488	1	ENST00000301178.4:c.163C>T	p.Arg55Trp	p.R55W	ENST00000301178	NM_021913.4	55	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs483352697		P-0037105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	237	636	0	ENST00000269305.4:c.587G>C	p.Arg196Pro	p.R196P	ENST00000269305	NM_001126112.2	196	cGa/cCa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479718	67479720	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0037105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	83	524	1	ENST00000327367.4:c.1027_1029del	p.Phe343del	p.F343del	ENST00000327367	NM_005902.3	342	aTCTtc/atc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639946	3639946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	138	786	0	ENST00000294008.3:c.3693G>T	p.Arg1231Ser	p.R1231S	ENST00000294008	NM_032444.2	1231	agG/agT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979267	93979267	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1417829621		P-0037105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	45	408	1	ENST00000369303.4:c.1561G>T	p.Ala521Ser	p.A521S	ENST00000369303	NM_004440.3	521	Gct/Tct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120592	94120592	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	96	537	1	ENST00000369303.4:c.459A>T	p.Glu153Asp	p.E153D	ENST00000369303	NM_004440.3	153	gaA/gaT																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0037120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	160	291	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	464	590	1	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120451	70120452	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0037120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	391	851	0	ENST00000245479.2:c.1455_1456del	p.Val486ProfsTer91	p.V486Pfs*91	ENST00000245479	NM_000346.3	485	GGg/g																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5258120	5258120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	248	670	0	ENST00000357368.4:c.614G>T	p.Ser205Ile	p.S205I	ENST00000357368	NM_002850.3	205	aGc/aTc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080325	5080325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	76	289	0	ENST00000381652.3:c.2228T>C	p.Leu743Ser	p.L743S	ENST00000381652	NM_004972.3	743	tTg/tCg																																																																														
TEK	7010	MSKCC	GRCh37	9	27158045	27158045	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	367	582	0	ENST00000380036.4:c.269G>C	p.Arg90Thr	p.R90T	ENST00000380036	NM_000459.3	90	aGa/aCa																																																																														
LYN	4067	MSKCC	GRCh37	8	56866483	56866483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1387477088		P-0037124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	106	584	0	ENST00000519728.1:c.730C>T	p.Arg244Trp	p.R244W	ENST00000519728	NM_002350.3	244	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	305	679	0	ENST00000269305.4:c.281C>G	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tGa																																																																														
KDR	3791	MSKCC	GRCh37	4	55963927	55963927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	81	363	0	ENST00000263923.4:c.2516C>A	p.Pro839His	p.P839H	ENST00000263923	NM_002253.2	839	cCt/cAt																																																																														
NBN	4683	MSKCC	GRCh37	8	90996788	90996788	+	start_lost	Translation_Start_Site	SNP	A	A	G	rs746422391		P-0037167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	162	431	0	ENST00000265433.3:c.2T>C	p.Met1?	p.M1?	ENST00000265433	NM_002485.4	1	aTg/aCg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519919		P-0037225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	346	1154	0	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0037225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	104	442	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0037225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	150	419	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909241		P-0037225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	371	600	0	ENST00000371953.3:c.395G>A	p.Gly132Asp	p.G132D	ENST00000371953	NM_000314.4	132	gGt/gAt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591133	67591134	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	94	364	0	ENST00000274335.5:c.1727dup	p.Arg577GlufsTer25	p.R577Efs*25	ENST00000274335		576	acg/aCcg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057519972		P-0037255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	47	458	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs397516435		P-0037255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	36	536	0	ENST00000269305.4:c.586C>G	p.Arg196Gly	p.R196G	ENST00000269305	NM_001126112.2	196	Cga/Gga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257007	16257007	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	76	563	0	ENST00000375759.3:c.4273del	p.Ser1425LeufsTer2	p.S1425Lfs*2	ENST00000375759	NM_015001.2	1424	agT/ag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084125	47084125	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	55	554	0	ENST00000409792.3:c.7164del	p.Ile2389LeufsTer22	p.I2389Lfs*22	ENST00000409792	NM_014159.6	2388	acC/ac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0037307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	191	395	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949057	44949058	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0037307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	237	529	0	ENST00000377967.4:c.3621_3622dup	p.Tyr1208CysfsTer14	p.Y1208Cfs*14	ENST00000377967	NM_021140.2	1206	-/GT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195638	123195638	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	94	210	0	ENST00000218089.9:c.1552G>T	p.Glu518Ter	p.E518*	ENST00000218089	NM_001042749.1	518	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0037311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	102	536	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0037392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	151	237	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579362	7579362	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057523496		P-0037392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	472	530	0	ENST00000269305.4:c.325T>G	p.Phe109Val	p.F109V	ENST00000269305	NM_001126112.2	109	Ttc/Gtc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934885	9934885	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1556	266	484	0	ENST00000330684.3:c.1405A>G	p.Arg469Gly	p.R469G	ENST00000330684	NM_001134407.1	469	Aga/Gga																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264628	46264634	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	AATTCAG	AATTCAG	-			P-0037392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	160	217	0	ENST00000371998.3:c.1505-7_1505-1del		p.X502_splice	ENST00000371998		502																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0037409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	169	629	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186501402	186501402	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0037409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	91	300	0	ENST00000323963.5:c.3G>A	p.Met1?	p.M1?	ENST00000323963		1	atG/atA																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0037414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	83	249	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
YES1	7525	MSKCC	GRCh37	18	751704	751704	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs368508541		P-0037414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	38	378	0	ENST00000314574.4:c.371+1G>A		p.X124_splice	ENST00000314574	NM_005433.3	124																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828630	72828630	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	191	632	0	ENST00000268489.5:c.7951G>T	p.Glu2651Ter	p.E2651*	ENST00000268489	NM_006885.3	2651	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	226	521	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	247	393	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782705		P-0037440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	227	714	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692887	89692887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	230	342	0	ENST00000371953.3:c.371G>T	p.Cys124Phe	p.C124F	ENST00000371953	NM_000314.4	124	tGt/tTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29562642	29562642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	137	482	0	ENST00000358273.4:c.3722G>C	p.Arg1241Pro	p.R1241P	ENST00000358273	NM_001042492.2	1241	cGa/cCa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376161	225376161	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	252	706	0	ENST00000264414.4:c.793G>T	p.Glu265Ter	p.E265*	ENST00000264414	NM_003590.4	265	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525645	187525645	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	149	499	0	ENST00000441802.2:c.10434del	p.Phe3478LeufsTer4	p.F3478Lfs*4	ENST00000441802	NM_005245.3	3478	ttT/tt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591087	67591095	+	inframe_deletion	In_Frame_Del	DEL	CAAACGTAT	CAAACGTAT	-			P-0037440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	73	243	0	ENST00000274335.5:c.1680_1688del	p.Asp560_Met563delinsGlu	p.D560_M563delinsE	ENST00000274335		560	gaCAAACGTATg/gag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631268	176631269	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0037440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	79	290	0	ENST00000439151.2:c.1212_1213del	p.Lys405ArgfsTer5	p.K405Rfs*5	ENST00000439151	NM_022455.4	404	cAG/c																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310860	123310860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147987917		P-0037461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	189	422	0	ENST00000358487.5:c.568C>T	p.Arg190Trp	p.R190W	ENST00000358487	NM_000141.4	190	Cgg/Tgg																																																																														
MET	4233	MSKCC	GRCh37	7	116340255	116340255	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	116	224	0	ENST00000397752.3:c.1117T>A	p.Phe373Ile	p.F373I	ENST00000397752	NM_000245.2	373	Ttc/Atc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	32	281	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	32	281	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	32	281	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133256572	133256572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	34	462	1	ENST00000320574.5:c.391G>C	p.Val131Leu	p.V131L	ENST00000320574	NM_006231.2	131	Gtg/Ctg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0037653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	395	688	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0037653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	289	496	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	135	574	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245372	153245372	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	109	557	0	ENST00000281708.4:c.1819del	p.Asp607IlefsTer21	p.D607Ifs*21	ENST00000281708	NM_033632.3	607	Gat/at																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18699324	18699324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369934938		P-0037653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	68	290	0	ENST00000266497.5:c.3425G>A	p.Arg1142His	p.R1142H	ENST00000266497		1142	cGt/cAt																																																																														
ALK	238	MSKCC	GRCh37	2	29551216	29551216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs749263944		P-0037653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	132	527	2	ENST00000389048.3:c.1414C>T	p.Arg472Trp	p.R472W	ENST00000389048	NM_004304.4	472	Cgg/Tgg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535403	66535403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	122	476	2	ENST00000273854.3:c.58G>A	p.Asp20Asn	p.D20N	ENST00000273854	NM_004439.5	20	Gac/Aac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	56	327	0	ENST00000281708.4:c.1513del	p.Arg505AlafsTer19	p.R505Afs*19	ENST00000281708	NM_033632.3	505	Cgc/gc																																																																														
APC	324	MSKCC	GRCh37	5	112175604	112175604	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	152	269	0	ENST00000257430.4:c.4313del	p.Thr1438AsnfsTer35	p.T1438Nfs*35	ENST00000257430	NM_000038.5	1438	aCa/aa																																																																														
MED12	9968	MSKCC	GRCh37	X	70345256	70345256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	121	279	2	ENST00000374080.3:c.2282G>A	p.Gly761Glu	p.G761E	ENST00000374080		761	gGa/gAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70347943	70347943	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	156	374	0	ENST00000374080.3:c.3182T>G	p.Val1061Gly	p.V1061G	ENST00000374080		1061	gTc/gGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	48	183	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0037889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	34	271	0	ENST00000274335.5:c.1727_1729del	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0037889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	81	434	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434991	110434991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	104	332	0	ENST00000375856.3:c.3410G>A	p.Arg1137His	p.R1137H	ENST00000375856	NM_003749.2	1137	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693002	89693003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	38	274	0	ENST00000371953.3:c.491dup	p.Val166SerfsTer14	p.V166Sfs*14	ENST00000371953	NM_000314.4	162	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101713	27101713	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0037889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	101	471	0	ENST00000324856.7:c.4993+2del		p.X1665_splice	ENST00000324856	NM_006015.4	1665																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106675	27106676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	86	484	0	ENST00000324856.7:c.6287dup	p.Ala2097SerfsTer2	p.A2097Sfs*2	ENST00000324856	NM_006015.4	2096	tca/tCca																																																																														
TET1	80312	MSKCC	GRCh37	10	70450715	70450715	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576727317		P-0037889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	84	400	0	ENST00000373644.4:c.5555C>T	p.Pro1852Leu	p.P1852L	ENST00000373644	NM_030625.2	1852	cCg/cTg																																																																														
RB1	5925	MSKCC	GRCh37	13	49050933	49050933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	62	318	0	ENST00000267163.4:c.2617A>G	p.Lys873Glu	p.K873E	ENST00000267163	NM_000321.2	873	Aaa/Gaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288377	15288379	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0037889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	88	486	1	ENST00000263388.2:c.4360_4362del	p.Asp1454del	p.D1454del	ENST00000263388	NM_000435.2	1454	GAC/-																																																																														
RHEB	6009	MSKCC	GRCh37	7	151188048	151188050	+	inframe_deletion	In_Frame_Del	DEL	GTA	GTA	-			P-0037889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	43	292	0	ENST00000262187.5:c.103_105del	p.Tyr35del	p.Y35del	ENST00000262187	NM_005614.3	35	TAC/-																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	61	288	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	35	265	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	95	344	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	166	437	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	28	516	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	79	352	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	59	294	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725054	89725054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	32	146	0	ENST00000371953.3:c.1037A>G	p.Tyr346Cys	p.Y346C	ENST00000371953	NM_000314.4	346	tAc/tGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241726	55241726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767505234		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	30	425	1	ENST00000275493.2:c.2174C>T	p.Thr725Met	p.T725M	ENST00000275493	NM_005228.3	725	aCg/aTg																																																																														
AR	367	MSKCC	GRCh37	X	66766238	66766238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1327366080		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	75	335	0	ENST00000374690.3:c.1250C>T	p.Ala417Val	p.A417V	ENST00000374690	NM_000044.3	417	gCg/gTg																																																																														
ERG	2078	MSKCC	GRCh37	21	39755612	39755612	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776452839		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	71	449	0	ENST00000288319.7:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000288319	NM_182918.3	385	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	61	390	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223604	55223604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs758748662		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	71	366	1	ENST00000275493.2:c.971G>A	p.Arg324His	p.R324H	ENST00000275493	NM_005228.3	324	cGc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033352	48033352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63750949		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	58	228	0	ENST00000234420.5:c.3656C>T	p.Thr1219Ile	p.T1219I	ENST00000234420	NM_000179.2	1219	aCt/aTt																																																																														
MITF	4286	MSKCC	GRCh37	3	70014298	70014298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142372494		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	85	420	0	ENST00000352241.4:c.1462G>A	p.Gly488Ser	p.G488S	ENST00000352241	NM_198159.2	488	Ggt/Agt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784137	9784137	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202142608		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	72	395	0	ENST00000377346.4:c.2705G>A	p.Arg902Gln	p.R902Q	ENST00000377346	NM_005026.3	902	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645309	67645310	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	63	450	0	ENST00000264010.4:c.579dup	p.Asp194ArgfsTer36	p.D194Rfs*36	ENST00000264010	NM_006565.3	192	caa/cAaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	67	591	2	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
CDK4	1019	MSKCC	GRCh37	12	58144530	58144530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	54	220	0	ENST00000257904.6:c.541C>T	p.Arg181Ter	p.R181*	ENST00000257904	NM_000075.3	181	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420870	49420870	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370465399		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	110	418	0	ENST00000301067.7:c.14879G>A	p.Arg4960Gln	p.R4960Q	ENST00000301067	NM_003482.3	4960	cGa/cAa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141567294	141567294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	46	489	2	ENST00000220592.5:c.920C>T	p.Thr307Met	p.T307M	ENST00000220592	NM_012154.3	307	aCg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221279	36221279	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	127	640	0	ENST00000222270.7:c.5113C>T	p.Arg1705Ter	p.R1705*	ENST00000222270	NM_014727.1	1705	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70350053	70350053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745627308		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	50	320	0	ENST00000374080.3:c.4036C>T	p.Arg1346Cys	p.R1346C	ENST00000374080		1346	Cgc/Tgc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188126	11188126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	170	291	0	ENST00000361445.4:c.5968G>A	p.Ala1990Thr	p.A1990T	ENST00000361445	NM_004958.3	1990	Gca/Aca																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582014	95582014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	15	148	0	ENST00000343455.3:c.1897C>T	p.His633Tyr	p.H633Y	ENST00000343455	NM_177438.2	633	Cac/Tac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858030	9858030	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	75	359	0	ENST00000330684.3:c.3371A>G	p.Lys1124Arg	p.K1124R	ENST00000330684	NM_001134407.1	1124	aAg/aGg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650878	37650878	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	141	384	0	ENST00000447079.4:c.2350C>T	p.Arg784Ter	p.R784*	ENST00000447079	NM_015083.1	784	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271657	15271657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	140	758	0	ENST00000263388.2:c.6782C>A	p.Pro2261His	p.P2261H	ENST00000263388	NM_000435.2	2261	cCc/cAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50920465	50920465	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779208942		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	95	556	0	ENST00000440232.2:c.3157C>T	p.Arg1053Cys	p.R1053C	ENST00000440232	NM_002691.3	1053	Cgc/Tgc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660895	227660895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	29	498	2	ENST00000305123.5:c.2560C>A	p.Arg854Ser	p.R854S	ENST00000305123	NM_005544.2	854	Cgc/Agc																																																																														
SRC	6714	MSKCC	GRCh37	20	36030851	36030851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	23	309	0	ENST00000358208.4:c.1130T>C	p.Met377Thr	p.M377T	ENST00000358208		377	aTg/aCg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169988254	169988254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	27	214	0	ENST00000295797.4:c.496C>T	p.Arg166Cys	p.R166C	ENST00000295797	NM_002740.5	166	Cgc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806657	1806657	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	64	591	0	ENST00000260795.2:c.1373del	p.Glu458GlyfsTer15	p.E458Gfs*15	ENST00000260795		458	gAg/gg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539265	187539266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	15	267	0	ENST00000441802.2:c.8474dup	p.Ser2826LysfsTer2	p.S2826Kfs*2	ENST00000441802	NM_005245.3	2825	gga/ggGa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751420	57751420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	74	262	0	ENST00000274289.3:c.1571C>T	p.Thr524Ile	p.T524I	ENST00000274289	NM_006622.3	524	aCc/aTc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651916	36651916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	114	448	0	ENST00000244741.5:c.38G>A	p.Cys13Tyr	p.C13Y	ENST00000244741	NM_000389.4	13	tGc/tAc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956977	2956977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1450077193		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	110	441	0	ENST00000396946.4:c.2650C>T	p.Arg884Trp	p.R884W	ENST00000396946	NM_032415.4	884	Cgg/Tgg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729897	41729897	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	60	403	0	ENST00000242208.4:c.632T>C	p.Val211Ala	p.V211A	ENST00000242208	NM_002192.2	211	gTa/gCa																																																																														
ARAF	369	MSKCC	GRCh37	X	47429012	47429012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754787460		P-0038016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	98	575	0	ENST00000377045.4:c.1375G>A	p.Gly459Arg	p.G459R	ENST00000377045	NM_001654.4	459	Ggg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0038170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	176	564	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0038170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	78	215	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591755	48591872	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCATGGGAGGATGTTCTTTCCCATTTATTTCCTATAGCTCCTGAGTATTGGTGTTCCATTGCTTACTTTGAAATGGATGTTCAGGTAGGAGAGACATTTAAGGTTCCTTCAAGCTGC	CTCATGGGAGGATGTTCTTTCCCATTTATTTCCTATAGCTCCTGAGTATTGGTGTTCCATTGCTTACTTTGAAATGGATGTTCAGGTAGGAGAGACATTTAAGGTTCCTTCAAGCTGC	-			P-0038170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	10	246	0	ENST00000342988.3:c.956-37_1036del		p.X319_splice	ENST00000342988	NM_005359.5	319																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	60	296	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	103	389	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912652		P-0038600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	406	477	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397514495		P-0038600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	8	519	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs387906846		P-0038600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	87	373	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	30	126	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120165	70120165	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	212	280	0	ENST00000245479.2:c.1169del	p.Gly390AlafsTer13	p.G390Afs*13	ENST00000245479	NM_000346.3	389	ccG/cc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245369	46245369	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	52	363	0	ENST00000334344.6:c.3463del	p.Leu1155Ter	p.L1155*	ENST00000334344	NM_152641.2	1155	Ctg/tg																																																																														
IDH2	3418	MSKCC	GRCh37	15	90645581	90645586	+	inframe_deletion	In_Frame_Del	DEL	GGCTCT	GGCTCT	-			P-0038600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	87	138	0	ENST00000330062.3:c.37_42del	p.Arg13_Ala14del	p.R13_A14del	ENST00000330062	NM_002168.2	13	AGAGCC/-																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533584	63533585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	605	674	0	ENST00000307078.5:c.1569dup	p.Val524ArgfsTer104	p.V524Rfs*104	ENST00000307078	NM_004655.3	523	-/C																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682811	190682811	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	18	265	0	ENST00000441310.2:c.487A>G	p.Lys163Glu	p.K163E	ENST00000441310	NM_000534.4	163	Aaa/Gaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257158	16257158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	54	603	0	ENST00000375759.3:c.4423C>T	p.Arg1475Ter	p.R1475*	ENST00000375759	NM_015001.2	1475	Cga/Tga																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933425	36933425	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	67	768	0	ENST00000361632.4:c.1862C>T	p.Pro621Leu	p.P621L	ENST00000361632		621	cCa/cTa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939466	36939467	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	37	786	0	ENST00000361632.4:c.383dup	p.Asn128LysfsTer22	p.N128Kfs*22	ENST00000361632		128	aac/aaAc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163760	72163760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	31	582	0	ENST00000357731.5:c.598G>A	p.Glu200Lys	p.E200K	ENST00000357731	NM_173808.2	200	Gaa/Aaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849818	156849818	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761967383		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	65	609	1	ENST00000524377.1:c.2074C>T	p.Arg692Cys	p.R692C	ENST00000524377	NM_002529.3	692	Cgc/Tgc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162748454	162748454	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	63	459	0	ENST00000367921.3:c.2368T>A	p.Ser790Thr	p.S790T	ENST00000367921	NM_006182.2	790	Tcc/Acc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176015326	176015326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	18	324	0	ENST00000367669.3:c.1412C>T	p.Ser471Leu	p.S471L	ENST00000367669	NM_022457.5	471	tCg/tTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70442648	70442649	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	81	568	1	ENST00000373644.4:c.4970_4971delinsTT	p.Pro1657Leu	p.P1657L	ENST00000373644	NM_030625.2	1657	cCC/cTT																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205534	61205534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140191819		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	53	527	0	ENST00000301761.2:c.319C>T	p.Arg107Cys	p.R107C	ENST00000301761	NM_017841.2	107	Cgc/Tgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946406	71946407	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	92	915	0	ENST00000298229.2:c.2570_2571delinsTT	p.Ser857Phe	p.S857F	ENST00000298229	NM_001567.3	857	tCC/tTT																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195634	102195634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	69	448	1	ENST00000263464.3:c.394G>A	p.Gly132Arg	p.G132R	ENST00000263464	NM_001165.4	132	Gga/Aga																																																																														
CBL	867	MSKCC	GRCh37	11	119156224	119156224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	70	495	0	ENST00000264033.4:c.1889C>T	p.Pro630Leu	p.P630L	ENST00000264033	NM_005188.3	630	cCc/cTc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21624446	21624446	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775015037		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	172	642	0	ENST00000421138.2:c.1583G>A	p.Arg528Lys	p.R528K	ENST00000421138		528	aGa/aAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420492	49420492	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775506569		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	53	742	0	ENST00000301067.7:c.15257G>A	p.Arg5086Gln	p.R5086Q	ENST00000301067	NM_003482.3	5086	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426034	49426035	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	78	838	1	ENST00000301067.7:c.12453_12454delinsTT	p.Leu4152Phe	p.L4152F	ENST00000301067	NM_003482.3	4151	aaCCtt/aaTTtt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432471	49432471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	63	805	0	ENST00000301067.7:c.8668C>T	p.Pro2890Ser	p.P2890S	ENST00000301067	NM_003482.3	2890	Cct/Tct																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865368	57865368	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1370254161		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	120	965	0	ENST00000228682.2:c.2845G>A	p.Gly949Arg	p.G949R	ENST00000228682	NM_005269.2	949	Gga/Aga																																																																														
POLE	5426	MSKCC	GRCh37	12	133244983	133244983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	67	919	0	ENST00000320574.5:c.2132C>T	p.Ser711Phe	p.S711F	ENST00000320574	NM_006231.2	711	tCc/tTc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336232	73336232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	19	276	0	ENST00000377767.4:c.2171C>T	p.Ser724Phe	p.S724F	ENST00000377767	NM_014953.3	724	tCt/tTt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606127	81606127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	90	592	0	ENST00000298171.2:c.797C>T	p.Ser266Phe	p.S266F	ENST00000298171	NM_000369.2	266	tCc/tTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562773	95562773	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753527258		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	54	353	0	ENST00000343455.3:c.4484C>T	p.Ser1495Leu	p.S1495L	ENST00000343455	NM_177438.2	1495	tCa/tTa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582104	95582104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	40	309	0	ENST00000343455.3:c.1807C>T	p.Pro603Ser	p.P603S	ENST00000343455	NM_177438.2	603	Cct/Tct																																																																														
AKT1	207	MSKCC	GRCh37	14	105242059	105242059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746934495		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	91	851	1	ENST00000349310.3:c.365C>T	p.Ser122Leu	p.S122L	ENST00000349310	NM_001014432.1	122	tCg/tTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42028445	42028445	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761761930		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	28	423	0	ENST00000219905.7:c.3983C>T	p.Ser1328Leu	p.S1328L	ENST00000219905	NM_001164273.1	1328	tCa/tTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42035101	42035101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	93	764	0	ENST00000219905.7:c.4943C>T	p.Ser1648Phe	p.S1648F	ENST00000219905	NM_001164273.1	1648	tCt/tTt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223352	2223354	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	TT			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	33	753	1	ENST00000326181.6:c.964_966delinsTT	p.Leu322PhefsTer8	p.L322Ffs*8	ENST00000326181	NM_032271.2	322	CTC/TT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857349	9857349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	21	524	0	ENST00000330684.3:c.4052G>A	p.Ser1351Asn	p.S1351N	ENST00000330684	NM_001134407.1	1351	aGc/aAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	24	515	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923477	9923477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	28	536	0	ENST00000330684.3:c.1810G>A	p.Ala604Thr	p.A604T	ENST00000330684	NM_001134407.1	604	Gct/Act																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032089	10032089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	32	682	0	ENST00000330684.3:c.734C>T	p.Ser245Phe	p.S245F	ENST00000330684	NM_001134407.1	245	tCc/tTc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50821726	50821726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	74	418	0	ENST00000398568.2:c.2062C>T	p.His688Tyr	p.H688Y	ENST00000398568	NM_001042412.1	688	Cat/Tat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992052	72992052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	82	714	0	ENST00000268489.5:c.1993C>T	p.Arg665Cys	p.R665C	ENST00000268489	NM_006885.3	665	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519986		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	141	663	0	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012135	16012135	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	90	434	0	ENST00000268712.3:c.2147C>G	p.Ala716Gly	p.A716G	ENST00000268712	NM_006311.3	716	gCc/gGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29654535	29654535	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	67	260	0	ENST00000358273.4:c.5287C>T	p.Gln1763Ter	p.Q1763*	ENST00000358273	NM_001042492.2	1763	Caa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29664864	29664864	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	31	412	0	ENST00000358273.4:c.6670A>T	p.Lys2224Ter	p.K2224*	ENST00000358273	NM_001042492.2	2224	Aag/Tag																																																																														
CD79B	974	MSKCC	GRCh37	17	62009599	62009599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	58	733	1	ENST00000392795.3:c.23C>T	p.Pro8Leu	p.P8L	ENST00000392795	NM_001039933.1	8	cCt/cTt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533478	63533478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	57	722	0	ENST00000307078.5:c.1676C>T	p.Ser559Phe	p.S559F	ENST00000307078	NM_004655.3	559	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5218527	5218527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751229657		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	48	843	0	ENST00000357368.4:c.3952G>A	p.Glu1318Lys	p.E1318K	ENST00000357368	NM_002850.3	1318	Gaa/Aaa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5219382	5219382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1385155560		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	39	815	0	ENST00000357368.4:c.3862G>A	p.Gly1288Arg	p.G1288R	ENST00000357368	NM_002850.3	1288	Ggg/Agg																																																																														
INSR	3643	MSKCC	GRCh37	19	7267676	7267677	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	37	721	0	ENST00000302850.5:c.331_332delinsAC	p.Gly111Thr	p.G111T	ENST00000302850	NM_000208.2	111	GGa/ACa																																																																														
INSR	3643	MSKCC	GRCh37	19	7267680	7267680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	87	705	0	ENST00000302850.5:c.328C>T	p.Arg110Trp	p.R110W	ENST00000302850	NM_000208.2	110	Cgg/Tgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599892	10599892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199953210		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	102	846	0	ENST00000171111.5:c.1684C>T	p.His562Tyr	p.H562Y	ENST00000171111	NM_203500.1	562	Cac/Tac																																																																														
CALR	811	MSKCC	GRCh37	19	13049960	13049960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	35	574	0	ENST00000316448.5:c.104C>T	p.Ser35Phe	p.S35F	ENST00000316448	NM_004343.3	35	tCc/tTc																																																																														
CALR	811	MSKCC	GRCh37	19	13050388	13050388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	80	567	0	ENST00000316448.5:c.340C>T	p.Pro114Ser	p.P114S	ENST00000316448	NM_004343.3	114	Cct/Tct																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276875	15276875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	44	716	0	ENST00000263388.2:c.5390C>T	p.Ser1797Phe	p.S1797F	ENST00000263388	NM_000435.2	1797	tCc/tTc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273297	18273297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1470167636		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	73	475	0	ENST00000222254.8:c.1090G>A	p.Glu364Lys	p.E364K	ENST00000222254	NM_005027.3	364	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210742	36210742	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761150250		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	95	859	0	ENST00000222270.7:c.493C>T	p.Arg165Cys	p.R165C	ENST00000222270	NM_014727.1	165	Cgc/Tgc																																																																														
CIC	23152	MSKCC	GRCh37	19	42799318	42799318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1296828295		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	48	421	1	ENST00000575354.2:c.4802C>T	p.Pro1601Leu	p.P1601L	ENST00000575354	NM_015125.3	1601	cCc/cTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25468189	25468189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	105	807	0	ENST00000264709.3:c.1487C>T	p.Ser496Phe	p.S496F	ENST00000264709	NM_175629.2	496	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	29519902	29519902	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200364883		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	34	582	1	ENST00000389048.3:c.1669C>T	p.Arg557Cys	p.R557C	ENST00000389048	NM_004304.4	557	Cgt/Tgt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48025798	48025798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	27	231	0	ENST00000234420.5:c.676G>A	p.Glu226Lys	p.E226K	ENST00000234420	NM_000179.2	226	Gag/Aag																																																																														
ACVR1	90	MSKCC	GRCh37	2	158617430	158617430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	37	535	0	ENST00000263640.3:c.1226T>C	p.Leu409Pro	p.L409P	ENST00000263640	NM_001105.4	409	cTt/cCt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719394	190719394	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	14	337	1	ENST00000441310.2:c.1396C>T	p.Gln466Ter	p.Q466*	ENST00000441310	NM_000534.4	466	Cag/Tag																																																																														
CASP8	841	MSKCC	GRCh37	2	202131212	202131212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	62	411	0	ENST00000358485.4:c.180G>T	p.Met60Ile	p.M60I	ENST00000358485	NM_001080125.1	60	atG/atT																																																																														
CASP8	841	MSKCC	GRCh37	2	202149886	202149886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	39	640	1	ENST00000358485.4:c.1327G>A	p.Asp443Asn	p.D443N	ENST00000358485	NM_001080125.1	443	Gat/Aat																																																																														
PAK7	0	MSKCC	GRCh37	20	9560859	9560859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	38	513	0	ENST00000353224.5:c.923C>T	p.Pro308Leu	p.P308L	ENST00000353224	NM_177990.2	308	cCc/cTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773981325		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	44	497	2	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023136	31023136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	65	575	0	ENST00000375687.4:c.2621C>T	p.Pro874Leu	p.P874L	ENST00000375687	NM_015338.5	874	cCt/cTt																																																																														
TOP1	7150	MSKCC	GRCh37	20	39709819	39709819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	40	234	0	ENST00000361337.2:c.446C>T	p.Pro149Leu	p.P149L	ENST00000361337	NM_003286.2	149	cCt/cTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076931	41076931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	63	553	0	ENST00000373198.4:c.1489C>T	p.Pro497Ser	p.P497S	ENST00000373198	NM_133170.3	497	Ccc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306763	41306763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	39	507	0	ENST00000373198.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000373198	NM_133170.3	299	gCt/gTt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264695	46264695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	63	410	1	ENST00000371998.3:c.1565C>T	p.Ser522Phe	p.S522F	ENST00000371998		522	tCt/tTt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252865	36252865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060499616		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	57	357	0	ENST00000300305.3:c.497G>A	p.Arg166Gln	p.R166Q	ENST00000300305		166	cGa/cAa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24143239	24143240	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	GT			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	45	789	0	ENST00000263121.7:c.471_472delinsGT	p.Arg158Ter	p.R158*	ENST00000263121	NM_003073.3	157	ggCCga/ggGTga																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434243	12434243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	71	419	0	ENST00000287820.6:c.611C>T	p.Ser204Phe	p.S204F	ENST00000287820	NM_015869.4	204	tCt/tTt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37050356	37050356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	58	447	0	ENST00000231790.2:c.505C>T	p.Pro169Ser	p.P169S	ENST00000231790	NM_000249.3	169	Cca/Tca																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067242	37067242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs63750760		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	40	410	0	ENST00000231790.2:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000231790	NM_000249.3	385	Cgt/Tgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164832	47164832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1017636782		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	33	311	0	ENST00000409792.3:c.1294C>T	p.Arg432Cys	p.R432C	ENST00000409792	NM_014159.6	432	Cgt/Tgt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933693	49933693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	90	894	1	ENST00000296474.3:c.2584C>T	p.Pro862Ser	p.P862S	ENST00000296474	NM_002447.2	862	Cca/Tca																																																																														
TP63	8626	MSKCC	GRCh37	3	189587167	189587167	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1209841422		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	33	447	0	ENST00000264731.3:c.1184C>T	p.Ser395Phe	p.S395F	ENST00000264731	NM_003722.4	395	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189607200	189607200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	62	780	0	ENST00000264731.3:c.1579C>T	p.Pro527Ser	p.P527S	ENST00000264731	NM_003722.4	527	Ccc/Tcc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138657	55138658	+	missense_variant	Missense_Mutation	DNP	TT	TT	AC			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	35	454	1	ENST00000257290.5:c.1334_1335delinsAC	p.Ile445Asn	p.I445N	ENST00000257290	NM_006206.4	445	aTT/aAC																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518114	187518114	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	35	521	0	ENST00000441802.2:c.12580T>A	p.Leu4194Ile	p.L4194I	ENST00000441802	NM_005245.3	4194	Tta/Ata																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557338	187557338	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1031625322		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	32	673	0	ENST00000441802.2:c.4024C>T	p.His1342Tyr	p.H1342Y	ENST00000441802	NM_005245.3	1342	Cat/Tat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557340	187557340	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	31	644	0	ENST00000441802.2:c.4022T>A	p.Leu1341His	p.L1341H	ENST00000441802	NM_005245.3	1341	cTc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	32	439	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35871202	35871202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200772681		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	47	315	0	ENST00000303115.3:c.424G>A	p.Gly142Arg	p.G142R	ENST00000303115	NM_002185.3	142	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112179452	112179452	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782312		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	26	522	0	ENST00000257430.4:c.8161C>T	p.Arg2721Cys	p.R2721C	ENST00000257430	NM_000038.5	2721	Cgc/Tgc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459633	149459633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767113303		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	32	609	1	ENST00000286301.3:c.574C>T	p.Arg192Trp	p.R192W	ENST00000286301	NM_005211.3	192	Cgg/Tgg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149499034	149499034	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs921756253		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	38	585	0	ENST00000261799.4:c.2794G>A	p.Glu932Lys	p.E932K	ENST00000261799	NM_002609.3	932	Gag/Aag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190297	32190297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	25	449	1	ENST00000375023.3:c.442G>A	p.Gly148Arg	p.G148R	ENST00000375023	NM_004557.3	148	Gga/Aga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956553	93956553	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1035177735		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	45	379	0	ENST00000369303.4:c.2683C>T	p.Arg895Ter	p.R895*	ENST00000369303	NM_004440.3	895	Cga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94124474	94124474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	62	477	0	ENST00000369303.4:c.109G>A	p.Asp37Asn	p.D37N	ENST00000369303	NM_004440.3	37	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117632232	117632232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	46	642	0	ENST00000368508.3:c.6184G>A	p.Asp2062Asn	p.D2062N	ENST00000368508	NM_002944.2	2062	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642495	117642495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs9489124		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	68	747	0	ENST00000368508.3:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000368508	NM_002944.2	1902	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117645576	117645576	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	47	659	0	ENST00000368508.3:c.5560G>A	p.Asp1854Asn	p.D1854N	ENST00000368508	NM_002944.2	1854	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658374	117658374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	121	753	0	ENST00000368508.3:c.5209G>A	p.Glu1737Lys	p.E1737K	ENST00000368508	NM_002944.2	1737	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686282	117686282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	39	338	0	ENST00000368508.3:c.3059C>T	p.Pro1020Leu	p.P1020L	ENST00000368508	NM_002944.2	1020	cCt/cTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706910	117706910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	79	516	0	ENST00000368508.3:c.2240G>A	p.Gly747Glu	p.G747E	ENST00000368508	NM_002944.2	747	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708070	117708070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	27	506	0	ENST00000368508.3:c.2107G>A	p.Asp703Asn	p.D703N	ENST00000368508	NM_002944.2	703	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710585	117710585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	20	314	0	ENST00000368508.3:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000368508	NM_002944.2	563	Gag/Aag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718196	117718196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	45	535	0	ENST00000368508.3:c.661C>T	p.Pro221Ser	p.P221S	ENST00000368508	NM_002944.2	221	Cca/Tca																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519446	137519446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	25	340	0	ENST00000367739.4:c.1192C>T	p.His398Tyr	p.H398Y	ENST00000367739	NM_000416.2	398	Cac/Tac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954961	2954961	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375594527		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	81	750	1	ENST00000396946.4:c.2749G>A	p.Glu917Lys	p.E917K	ENST00000396946	NM_032415.4	917	Gag/Aag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984104	2984104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	48	524	0	ENST00000396946.4:c.426G>A	p.Met142Ile	p.M142I	ENST00000396946	NM_032415.4	142	atG/atA																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985473	2985473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	58	486	1	ENST00000396946.4:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000396946	NM_032415.4	113	cGg/cAg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431631	6431631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	70	478	0	ENST00000356142.4:c.184G>A	p.Glu62Lys	p.E62K	ENST00000356142	NM_018890.3	62	Gaa/Aaa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971154	13971154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	30	326	0	ENST00000405192.2:c.775G>A	p.Glu259Lys	p.E259K	ENST00000405192	NM_001163147.1	259	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210120	55210120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	75	427	0	ENST00000275493.2:c.230C>T	p.Ser77Phe	p.S77F	ENST00000275493	NM_005228.3	77	tCc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55229285	55229285	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1330512770		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	72	562	0	ENST00000275493.2:c.1592G>A	p.Arg531Gln	p.R531Q	ENST00000275493	NM_005228.3	531	cGa/cAa																																																																														
HGF	3082	MSKCC	GRCh37	7	81374353	81374353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	39	333	0	ENST00000222390.5:c.709C>T	p.His237Tyr	p.H237Y	ENST00000222390	NM_000601.4	237	Cat/Tat																																																																														
MET	4233	MSKCC	GRCh37	7	116371896	116371896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	36	429	0	ENST00000397752.3:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000397752	NM_000245.2	459	Gag/Aag																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523609	148523609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	42	323	0	ENST00000320356.2:c.844C>T	p.His282Tyr	p.H282Y	ENST00000320356	NM_004456.4	282	Cat/Tat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864428	151864428	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	29	360	0	ENST00000262189.6:c.9553C>T	p.Gln3185Ter	p.Q3185*	ENST00000262189	NM_170606.2	3185	Cag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030790	69030790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	51	334	0	ENST00000288368.4:c.3332G>A	p.Cys1111Tyr	p.C1111Y	ENST00000288368	NM_024870.2	1111	tGc/tAc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970924	70970924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1277239045		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	96	668	4	ENST00000276594.2:c.1337G>A	p.Arg446Gln	p.R446Q	ENST00000276594	NM_024504.3	446	cGg/cAg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141582972	141582972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	112	745	1	ENST00000220592.5:c.275C>T	p.Pro92Leu	p.P92L	ENST00000220592	NM_012154.3	92	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317926	8317926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	44	458	0	ENST00000356435.5:c.5687C>T	p.Ser1896Phe	p.S1896F	ENST00000356435		1896	tCc/tTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341097	8341097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs724159861		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	47	441	0	ENST00000356435.5:c.5119G>A	p.Gly1707Arg	p.G1707R	ENST00000356435		1707	Gga/Aga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518073	8518073	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1480778931		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	40	437	0	ENST00000356435.5:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000356435		440	Gaa/Aaa																																																																														
SYK	6850	MSKCC	GRCh37	9	93606379	93606379	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757250931		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	40	700	3	ENST00000375746.1:c.199G>A	p.Glu67Lys	p.E67K	ENST00000375746	NM_001174167.1	67	Gag/Aag																																																																														
SYK	6850	MSKCC	GRCh37	9	93650812	93650812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	21	390	0	ENST00000375746.1:c.1738G>A	p.Glu580Lys	p.E580K	ENST00000375746	NM_001174167.1	580	Gaa/Aaa																																																																														
ABL1	25	MSKCC	GRCh37	9	133738415	133738416	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	28	434	0	ENST00000318560.5:c.815_816delinsTT	p.Thr272Ile	p.T272I	ENST00000318560	NM_005157.4	272	aCC/aTT																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781467	135781467	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs118203537		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	24	516	0	ENST00000298552.3:c.1498C>T	p.Arg500Ter	p.R500*	ENST00000298552	NM_001162426.1	500	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390593	139390593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	60	1028	1	ENST00000277541.6:c.7598C>T	p.Ser2533Phe	p.S2533F	ENST00000277541	NM_017617.3	2533	tCc/tTc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314905	1314905	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	69	487	0				ENST00000381566																																																																																	
BCOR	54880	MSKCC	GRCh37	X	39932453	39932453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	124	892	0	ENST00000378444.4:c.2146T>C	p.Tyr716His	p.Y716H	ENST00000378444	NM_001123385.1	716	Tac/Cac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922709	44922709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1188130009		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	67	427	0	ENST00000377967.4:c.1570C>T	p.Pro524Ser	p.P524S	ENST00000377967	NM_021140.2	524	Cct/Tct																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53250074	53250075	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	110	681	0	ENST00000375401.3:c.174_175delinsAA	p.Glu59Lys	p.E59K	ENST00000375401	NM_004187.3	58	gtGGaa/gtAAaa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412785	63412785	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1394216535		P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	116	722	0	ENST00000330258.3:c.382C>T	p.Pro128Ser	p.P128S	ENST00000330258	NM_152424.3	128	Ccc/Tcc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413129	63413130	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	127	679	1	ENST00000330258.3:c.37_38delinsAA	p.Gly13Lys	p.G13K	ENST00000330258	NM_152424.3	13	GGa/AAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70357586	70357586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	102	829	0	ENST00000374080.3:c.5837C>T	p.Pro1946Leu	p.P1946L	ENST00000374080		1946	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	329	413	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28934573		P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	552	541	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176050363	176050363	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1301409514		P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	35	394	2	ENST00000367669.3:c.1202G>A	p.Arg401Gln	p.R401Q	ENST00000367669	NM_022457.5	401	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	798	729	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909238		P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	201	337	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																														
ALK	238	MSKCC	GRCh37	2	30143293	30143293	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs748978993		P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	520	662	0	ENST00000389048.3:c.233C>G	p.Ser78Trp	p.S78W	ENST00000389048	NM_004304.4	78	tCg/tGg																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158629	26158629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	174	185	0	ENST00000289316.2:c.232G>A	p.Ala78Thr	p.A78T	ENST00000289316	NM_138720.2	78	Gct/Act																																																																														
JAK1	3716	MSKCC	GRCh37	1	65309890	65309890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	72	366	0	ENST00000342505.4:c.2260G>A	p.Glu754Lys	p.E754K	ENST00000342505	NM_002227.2	754	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112174605	112174605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	38	347	0	ENST00000257430.4:c.3314G>T	p.Arg1105Leu	p.R1105L	ENST00000257430	NM_000038.5	1105	cGg/cTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829847	72829847	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750842718		P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	515	694	1	ENST00000268489.5:c.6734C>T	p.Ser2245Leu	p.S2245L	ENST00000268489	NM_006885.3	2245	tCa/tTa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28624268	28624268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	74	447	1	ENST00000241453.7:c.706G>A	p.Glu236Lys	p.E236K	ENST00000241453	NM_004119.2	236	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107122	27107122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	423	445	0	ENST00000324856.7:c.6733G>T	p.Asp2245Tyr	p.D2245Y	ENST00000324856	NM_006015.4	2245	Gac/Tac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447000	49447000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	347	379	0	ENST00000301067.7:c.944G>C	p.Trp315Ser	p.W315S	ENST00000301067	NM_003482.3	315	tGg/tCg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032558	12032558	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1355543573		P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	237	336	0	ENST00000353533.5:c.994G>A	p.Glu332Lys	p.E332K	ENST00000353533	NM_003010.3	332	Gag/Aag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023595	31023595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1462	112	520	0	ENST00000375687.4:c.3080C>G	p.Ser1027Cys	p.S1027C	ENST00000375687	NM_015338.5	1027	tCt/tGt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024183	31024183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1415	102	546	0	ENST00000375687.4:c.3668C>G	p.Ser1223Cys	p.S1223C	ENST00000375687	NM_015338.5	1223	tCt/tGt																																																																														
EP300	2033	MSKCC	GRCh37	22	41547861	41547861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	330	413	0	ENST00000263253.7:c.2842G>C	p.Glu948Gln	p.E948Q	ENST00000263253	NM_001429.3	948	Gaa/Caa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934729	49934729	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	420	617	0	ENST00000296474.3:c.2167G>C	p.Glu723Gln	p.E723Q	ENST00000296474	NM_002447.2	723	Gag/Cag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259063	89259063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	212	268	0	ENST00000336596.2:c.207G>T	p.Gln69His	p.Q69H	ENST00000336596	NM_005233.5	69	caG/caT																																																																														
ATR	545	MSKCC	GRCh37	3	142185372	142185372	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	95	233	0	ENST00000350721.4:c.6691G>C	p.Asp2231His	p.D2231H	ENST00000350721	NM_001184.3	2231	Gat/Cat																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998990	169998990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	44	297	0	ENST00000295797.4:c.919G>C	p.Glu307Gln	p.E307Q	ENST00000295797	NM_002740.5	307	Gag/Cag																																																																														
APC	324	MSKCC	GRCh37	5	112178697	112178697	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	215	376	0	ENST00000257430.4:c.7406C>G	p.Ser2469Cys	p.S2469C	ENST00000257430	NM_000038.5	2469	tCt/tGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562202	176562202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	60	552	0	ENST00000439151.2:c.98G>C	p.Gly33Ala	p.G33A	ENST00000439151	NM_022455.4	33	gGt/gCt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652094	36652101	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGCCCA	CCTGCCCA	-			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	526	642	0	ENST00000244741.5:c.216_223del	p.Leu73AlafsTer13	p.L73Afs*13	ENST00000244741	NM_000389.4	72	ggCCTGCCCAag/ggag																																																																														
MET	4233	MSKCC	GRCh37	7	116415150	116415150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	328	476	0	ENST00000397752.3:c.3244G>A	p.Glu1082Lys	p.E1082K	ENST00000397752	NM_000245.2	1082	Gaa/Aaa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87322782	87322782	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201256653		P-0038879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	186	406	0	ENST00000277120.3:c.383C>T	p.Thr128Met	p.T128M	ENST00000277120		128	aCg/aTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243365	46243365	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs76994389		P-0039149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	66	255	0	ENST00000334344.6:c.1718C>T	p.Thr573Met	p.T573M	ENST00000334344	NM_152641.2	573	aCg/aTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9546703	9546703	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	42	442	0	ENST00000353224.5:c.1319T>G	p.Val440Gly	p.V440G	ENST00000353224	NM_177990.2	440	gTc/gGc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058563	72058563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1489300985		P-0039149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	114	500	1	ENST00000357731.5:c.877G>A	p.Gly293Ser	p.G293S	ENST00000357731	NM_173808.2	293	Ggc/Agc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	123	649	0	ENST00000267101.3:c.985A>C	p.Lys329Gln	p.K329Q	ENST00000267101	NM_001982.3	329	Aaa/Caa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864976	57864976	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	166	776	0	ENST00000228682.2:c.2453A>C	p.Gln818Pro	p.Q818P	ENST00000228682	NM_005269.2	818	cAg/cCg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348236	348244	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCACCTT	CCTCACCTT	GGGCA			P-0039149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	252	862	2	ENST00000262320.3:c.1262_1270delinsTGCCC	p.Glu421ValfsTer58	p.E421Vfs*58	ENST00000262320	NM_003502.3	421	gAAGGTGAGGac/gTGCCCac																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661096	227661096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	160	773	0	ENST00000305123.5:c.2359C>G	p.Gln787Glu	p.Q787E	ENST00000305123	NM_005544.2	787	Cag/Gag																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536266	106536266	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	127	534	0	ENST00000369096.4:c.233A>T	p.Gln78Leu	p.Q78L	ENST00000369096	NM_001198.3	78	cAg/cTg																																																																														
FYN	2534	MSKCC	GRCh37	6	111983114	111983114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	69	524	0	ENST00000368678.4:c.1433G>C	p.Arg478Pro	p.R478P	ENST00000368678		478	cGa/cCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	80	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	170	501	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	85	252	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	58	279	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480397	89480397	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756739935		P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	23	243	0	ENST00000336596.2:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000336596	NM_005233.5	745	cGa/cAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	156	401	0	ENST00000543371.1:c.1345del	p.Ala449HisfsTer42	p.A449Hfs*42	ENST00000543371	NM_001198531.1	448	cGg/cg																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316307	14316307	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	105	453	0	ENST00000256196.4:c.298A>C	p.Ser100Arg	p.S100R	ENST00000256196		100	Agt/Cgt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519152	103519152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	40	337	0	ENST00000355739.4:c.2490G>T	p.Lys830Asn	p.K830N	ENST00000355739	NM_000123.3	830	aaG/aaT																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703534	47703534	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	44	461	0	ENST00000233146.2:c.2034T>A	p.Tyr678Ter	p.Y678*	ENST00000233146	NM_000251.2	678	taT/taA																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412131	63412132	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0039264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	201	667	0	ENST00000330258.3:c.1034_1035dup	p.Ser346ProfsTer19	p.S346Pfs*19	ENST00000330258	NM_152424.3	345	-/CC																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	79	865	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	27	326	1	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	23	345	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459239	120459239	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	70	581	1	ENST00000256646.2:c.6106C>T	p.Arg2036Ter	p.R2036*	ENST00000256646	NM_024408.3	2036	Cga/Tga																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444275	50444275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	39	322	0	ENST00000331340.3:c.205C>T	p.Arg69Cys	p.R69C	ENST00000331340	NM_006060.4	69	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923738	72923738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	79	764	0	ENST00000268489.5:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000268489	NM_006885.3	1114	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092947	27092947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	29	395	0	ENST00000324856.7:c.2879-1G>A		p.X960_splice	ENST00000324856	NM_006015.4	960																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	133	994	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227863	36227863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	86	1064	0	ENST00000222270.7:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000222270	NM_014727.1	2450	Cga/Tga																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662351	227662352	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs766624780		P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	71	659	0	ENST00000305123.5:c.1103dup	p.Leu369AlafsTer28	p.L369Afs*28	ENST00000305123	NM_005544.2	368	ccg/ccCg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212568866	212568866	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	26	470	0	ENST00000342788.4:c.1252del	p.Ser418LeufsTer4	p.S418Lfs*4	ENST00000342788	NM_005235.2	418	Tct/ct																																																																														
AKT3	10000	MSKCC	GRCh37	1	244006445	244006445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	57	522	0	ENST00000263826.5:c.28G>T	p.Gly10Cys	p.G10C	ENST00000263826	NM_005465.4	10	Ggt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830885	72830885	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	53	658	0	ENST00000268489.5:c.5696del	p.Gly1899GlufsTer15	p.G1899Efs*15	ENST00000268489	NM_006885.3	1899	gGa/ga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210796	36210796	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1342	102	999	1	ENST00000222270.7:c.547G>T	p.Glu183Ter	p.E183*	ENST00000222270	NM_014727.1	183	Gag/Tag																																																																														
NF2	4771	MSKCC	GRCh37	22	29999991	29999991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	27	361	0	ENST00000338641.4:c.4G>A	p.Ala2Thr	p.A2T	ENST00000338641	NM_000268.3	2	Gcc/Acc																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665538	138665538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	71	546	0	ENST00000330315.3:c.27G>T	p.Glu9Asp	p.E9D	ENST00000330315	NM_023067.3	9	gaG/gaT																																																																														
TP63	8626	MSKCC	GRCh37	3	189607228	189607228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	59	762	0	ENST00000264731.3:c.1607A>G	p.His536Arg	p.H536R	ENST00000264731	NM_003722.4	536	cAc/cGc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821202	32821202	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41540013		P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	88	1004	0	ENST00000354258.4:c.392G>A	p.Gly131Glu	p.G131E	ENST00000354258	NM_000593.5	131	gGg/gAg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117874146	117874146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	34	390	1	ENST00000297338.2:c.308C>T	p.Ala103Val	p.A103V	ENST00000297338	NM_006265.2	103	gCa/gTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141060	55141060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	55	426	0	ENST00000257290.5:c.1706G>A	p.Gly569Glu	p.G569E	ENST00000257290	NM_006206.4	569	gGa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	54	182	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652129	36652136	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCCGG	GAGGCCGG	-			P-0039725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	151	614	0	ENST00000244741.5:c.253_260del	p.Gly85Ter	p.G85*	ENST00000244741	NM_000389.4	84	cGAGGCCGG/c																																																																														
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs587776783		P-0039725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	40	334	0	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																															
POLE	5426	MSKCC	GRCh37	12	133214607	133214607	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1337287611		P-0039725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	97	488	0	ENST00000320574.5:c.5671A>G	p.Thr1891Ala	p.T1891A	ENST00000320574	NM_006231.2	1891	Acc/Gcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408924	41408924	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs778928297		P-0039725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	89	470	0	ENST00000373198.4:c.502G>T	p.Val168Phe	p.V168F	ENST00000373198	NM_133170.3	168	Gtc/Ttc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268741	46268741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	143	602	0	ENST00000371998.3:c.3026C>A	p.Ser1009Tyr	p.S1009Y	ENST00000371998		1009	tCc/tAc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121323	29121323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	111	749	0	ENST00000328354.6:c.352G>A	p.Asp118Asn	p.D118N	ENST00000328354	NM_007194.3	118	Gac/Aac																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645036	86645037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0039725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	41	396	0	ENST00000274376.6:c.1109_1110insTA	p.Gln370HisfsTer8	p.Q370Hfs*8	ENST00000274376	NM_002890.2	370	caa/cATaa																																																																														
PARK2	0	MSKCC	GRCh37	6	162864506	162864506	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	40	393	0	ENST00000366898.1:c.8-1G>A		p.X3_splice	ENST00000366898	NM_004562.2	3																																																																															
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520001		P-0039734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	332	689	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643619	38643619	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs140225135		P-0039734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	30	505	0	ENST00000299084.4:c.1089A>G	p.Ile363Met	p.I363M	ENST00000299084	NM_152594.2	363	atA/atG																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564274	86564298	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCGAGGCCGGCAGTGAGGAG	GGCGGCCGAGGCCGGCAGTGAGGAG	-			P-0039734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	80	338	0	ENST00000274376.6:c.13_37del	p.Glu5ArgfsTer2	p.E5Rfs*2	ENST00000274376	NM_002890.2	2	atGGCGGCCGAGGCCGGCAGTGAGGAG/at																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883190	37883723	+	splice_donor_variant,splice_acceptor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	CTGTCCAGACCCTGCCCCGGGCGCTGGGGGCATGGTCCACCACAGGCACCGCAGCTCATCTACCAGGGTCAGTGCCCTCGGTCACACTGTGTGGCTGTCTGCTTACCTCCCCCAACCCCGGTGGACTAGGGTCCCTTTCTCTGATGTTCCCTCAACTGTCACCTCTCAAGGAAACCCCATTATCCCTACAAAAAATTCTTACTGCCTTCCAACCCCTGTGACCCCATTCTCTCCACGGTGACTGTGTCATACCCCAAAGGTGACCTCTGTTTTTCTCCTGTGACCCTGTCACCTTCCATGGAGTCCCCATCCCAGATCCGTGAGTGACCCCCATCATGACTTTCTTTCTTGTCCCCAGAGTGGCGGTGGGGACCTGACACTAGGGCTGGAGCCCTCTGAAGAGGAGGCCCCCAGGTCTCCACTGGCACCCTCCGAAGGGGCTGGCTCCGATGTATTTGATGGTGACCTGGGAATGGGGGCAGCCAAGGGGCTGCAAAGCCTCCCCACACATGACCCCAGCCCTCTACAGCGGTA	CTGTCCAGACCCTGCCCCGGGCGCTGGGGGCATGGTCCACCACAGGCACCGCAGCTCATCTACCAGGGTCAGTGCCCTCGGTCACACTGTGTGGCTGTCTGCTTACCTCCCCCAACCCCGGTGGACTAGGGTCCCTTTCTCTGATGTTCCCTCAACTGTCACCTCTCAAGGAAACCCCATTATCCCTACAAAAAATTCTTACTGCCTTCCAACCCCTGTGACCCCATTCTCTCCACGGTGACTGTGTCATACCCCAAAGGTGACCTCTGTTTTTCTCCTGTGACCCTGTCACCTTCCATGGAGTCCCCATCCCAGATCCGTGAGTGACCCCCATCATGACTTTCTTTCTTGTCCCCAGAGTGGCGGTGGGGACCTGACACTAGGGCTGGAGCCCTCTGAAGAGGAGGCCCCCAGGTCTCCACTGGCACCCTCCGAAGGGGCTGGCTCCGATGTATTTGATGGTGACCTGGGAATGGGGGCAGCCAAGGGGCTGCAAAGCCTCCCCACACATGACCCCAGCCCTCTACAGCGGTA	-			P-0039734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	352	766	0	ENST00000269571.5:c.3094_3336del		p.X1032_splice	ENST00000269571		1032	ttCTGTCCAGACCCTGCCCCGGGCGCTGGGGGCATGGTCCACCACAGGCACCGCAGCTCATCTACCAGGGTCAGTGCCCTCGGTCACACTGTGTGGCTGTCTGCTTACCTCCCCCAACCCCGGTGGACTAGGGTCCCTTTCTCTGATGTTCCCTCAACTGTCACCTCTCAAGGAAACCCCATTATCCCTACAAAAAATTCTTACTGCCTTCCAACCCCTGTGACCCCATTCTCTCCACGGTGACTGTGTCATACCCCAAAGGTGACCTCTGTTTTTCTCCTGTGACCCTGTCACCTTCCATGGAGTCCCCATCCCAGATCCGTGAGTGACCCCCATCATGACTTTCTTTCTTGTCCCCAGAGTGGCGGTGGGGACCTGACACTAGGGCTGGAGCCCTCTGAAGAGGAGGCCCCCAGGTCTCCACTGGCACCCTCCGAAGGGGCTGGCTCCGATGTATTTGATGGTGACCTGGGAATGGGGGCAGCCAAGGGGCTGCAAAGCCTCCCCACACATGACCCCAGCCCTCTACAGCGGTAc/ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	192	416	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	462	763	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	73	310	0	ENST00000257430.4:c.4473dup	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																														
WT1	7490	MSKCC	GRCh37	11	32450103	32450103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	186	710	1	ENST00000332351.3:c.709G>A	p.Ala237Thr	p.A237T	ENST00000332351	NM_024426.4	237	Gcg/Acg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38282215	38282215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	138	551	3	ENST00000425967.3:c.841C>T	p.Arg281Trp	p.R281W	ENST00000425967	NM_001174067.1	281	Cgg/Tgg																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873078	136873078	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	88	440	0	ENST00000241393.3:c.420C>G	p.His140Gln	p.H140Q	ENST00000241393	NM_003467.2	140	caC/caG																																																																														
MLH1	4292	MSKCC	GRCh37	3	37055952	37055952	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	66	372	0	ENST00000231790.2:c.707A>G	p.Lys236Arg	p.K236R	ENST00000231790	NM_000249.3	236	aAa/aGa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0039931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	132	546	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830711	72830712	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCAACTCAAAGCCAAAGTTCT			P-0039931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	128	734	1	ENST00000268489.5:c.5849_5869dup	p.Glu1950_Leu1956dup	p.E1950_L1956dup	ENST00000268489	NM_006885.3	1950	gtc/gAGAACTTTGGCTTTGAGTTGGtc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910569	29910569	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	94	525	0	ENST00000376809.5:c.109T>G	p.Ser37Ala	p.S37A	ENST00000376809	NM_002116.7	37	Tcc/Gcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	79	411	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	147	348	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987204	36987204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	50	576	0	ENST00000354822.5:c.485C>T	p.Ala162Val	p.A162V	ENST00000354822	NM_001079668.2	162	gCg/gTg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46738405	46738405	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	111	476	0	ENST00000371975.4:c.1306G>T	p.Glu436Ter	p.E436*	ENST00000371975	NM_003579.3	436	Gaa/Taa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852740	63852740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	106	457	0	ENST00000279873.7:c.3518C>T	p.Ala1173Val	p.A1173V	ENST00000279873	NM_032199.2	1173	gCc/gTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81946269	81946269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	114	695	0	ENST00000359376.3:c.2002G>T	p.Ala668Ser	p.A668S	ENST00000359376	NM_002661.3	668	Gcc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578194	7578195	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACCAC			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	233	677	0	ENST00000269305.4:c.649_654dup	p.Val217_Val218dup	p.V217_V218dup	ENST00000269305	NM_001126112.2	217	-/GTGGTG																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584542	48584542	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	109	466	0	ENST00000342988.3:c.715C>T	p.Gln239Ter	p.Q239*	ENST00000342988	NM_005359.5	239	Cag/Tag																																																																														
AURKA	6790	MSKCC	GRCh37	20	54958048	54958048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	98	251	0	ENST00000312783.6:c.559C>A	p.His187Asn	p.H187N	ENST00000312783	NM_198436.1	187	Cac/Aac																																																																														
ATR	545	MSKCC	GRCh37	3	142275252	142275252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	72	391	0	ENST00000350721.4:c.2051C>T	p.Ser684Phe	p.S684F	ENST00000350721	NM_001184.3	684	tCt/tTt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161744	56161744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1406908752		P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	41	415	1	ENST00000399503.3:c.1241G>A	p.Arg414His	p.R414H	ENST00000399503	NM_005921.1	414	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112174160	112174160	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	55	379	0	ENST00000257430.4:c.2870del	p.Lys957ArgfsTer8	p.K957Rfs*8	ENST00000257430	NM_000038.5	957	Aag/ag																																																																														
ABL1	25	MSKCC	GRCh37	9	133760441	133760441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	151	681	0	ENST00000318560.5:c.2764G>T	p.Ala922Ser	p.A922S	ENST00000318560	NM_005157.4	922	Gcg/Tcg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317467	1317467	+	downstream_gene_variant	3'Flank	SNP	G	G	C	rs778213444		P-0039966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	100	699	0				ENST00000381566																																																																																	
SMARCB1	6598	MSKCC	GRCh37	22	24135758	24135758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			492	202	528	0	ENST00000263121.7:c.245C>T	p.Thr82Met	p.T82M	ENST00000263121	NM_003073.3	82	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421039	49421039	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs398123721		P-0039981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	171	518	1	ENST00000301067.7:c.14710C>T	p.Arg4904Ter	p.R4904*	ENST00000301067	NM_003482.3	4904	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578548	7578553	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GGGAGT	GGGAGT	-			P-0039981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	265	784	1	ENST00000269305.4:c.377_382del	p.Tyr126_Pro128delinsSer	p.Y126_P128delinsS	ENST00000269305	NM_001126112.2	126	tACTCCCct/tct																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222748	5222748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	211	710	0	ENST00000357368.4:c.3055G>T	p.Gly1019Cys	p.G1019C	ENST00000357368	NM_002850.3	1019	Ggc/Tgc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245359	153245359	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	141	553	0	ENST00000281708.4:c.1832del	p.Gly611AspfsTer17	p.G611Dfs*17	ENST00000281708	NM_033632.3	611	gGa/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	163	425	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	433	857	2	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119884	70119884	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	169	673	1	ENST00000245479.2:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000245479	NM_000346.3	296	Cag/Tag																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	93	341	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																														
RRAS	6237	MSKCC	GRCh37	19	50143283	50143283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1212916232		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	67	265	0	ENST00000246792.3:c.73C>T	p.Pro25Ser	p.P25S	ENST00000246792	NM_006270.3	25	Ccg/Tcg																																																																														
ALK	238	MSKCC	GRCh37	2	29474129	29474129	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	99	560	0	ENST00000389048.3:c.2046T>A	p.His682Gln	p.H682Q	ENST00000389048	NM_004304.4	682	caT/caA																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	114	548	3	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
MST1	4485	MSKCC	GRCh37	3	49723791	49723791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	12	15	0	ENST00000449682.2:c.971A>G	p.Gln324Arg	p.Q324R	ENST00000449682	NM_020998.3	324	cAa/cGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	78	444	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	92	475	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	53	254	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	62	259	0	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70338684	70338698	+	inframe_deletion	In_Frame_Del	DEL	AGGACCCCAAACAGA	AGGACCCCAAACAGA	-			P-0040026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	113	357	0	ENST00000374080.3:c.84_98del	p.Asp28_Lys32del	p.D28_K32del	ENST00000374080		27	cAGGACCCCAAACAGAag/cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	67	432	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0040030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	46	265	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	103	465	0				ENST00000310581	NM_198253.2																																																																																
BRCA1	672	MSKCC	GRCh37	17	41276053	41276053	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs80357406		P-0040030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	44	523	0	ENST00000357654.3:c.61A>G	p.Ile21Val	p.I21V	ENST00000357654	NM_007294.3	21	Atc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1131691029		P-0040044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	308	733	0	ENST00000269305.4:c.826G>C	p.Ala276Pro	p.A276P	ENST00000269305	NM_001126112.2	276	Gcc/Ccc																																																																														
RARA	5914	MSKCC	GRCh37	17	38508177	38508177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749735817		P-0040044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	52	463	0	ENST00000254066.5:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000254066	NM_000964.3	162	cGa/cAa																																																																														
SESN2	83667	MSKCC	GRCh37	1	28607281	28607281	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756166147		P-0040044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	119	570	2	ENST00000253063.3:c.1411G>A	p.Ala471Thr	p.A471T	ENST00000253063	NM_031459.4	471	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3795286	3795286	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	59	431	0	ENST00000262367.5:c.3906G>A	p.Trp1302Ter	p.W1302*	ENST00000262367	NM_004380.2	1302	tgG/tgA																																																																														
RHOA	387	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519954		P-0040137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	41	548	0	ENST00000418115.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000418115	NM_001664.2	42	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577088	7577088	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1204379654		P-0040137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	30	592	1	ENST00000269305.4:c.850A>C	p.Thr284Pro	p.T284P	ENST00000269305	NM_001126112.2	284	Aca/Cca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023345	27023346	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0040137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	18	113	0	ENST00000324856.7:c.452_453del	p.Gly151AlafsTer248	p.G151Afs*248	ENST00000324856	NM_006015.4	151	GGg/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	11	307	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0040179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	33	366	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0040179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	18	196	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
AKT1	207	MSKCC	GRCh37	14	105239419	105239419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	49	426	0	ENST00000349310.3:c.968A>G	p.Asp323Gly	p.D323G	ENST00000349310	NM_001014432.1	323	gAc/gGc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	81	330	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	55	273	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702265	47702265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63750508		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	106	450	0	ENST00000233146.2:c.1861C>T	p.Arg621Ter	p.R621*	ENST00000233146	NM_000251.2	621	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782529		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1244	28	784	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039356	47039358	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	256	467	0	ENST00000329236.7:c.754_756del	p.Ser252del	p.S252del	ENST00000329236	NM_001204466.1	250	TCC/-																																																																														
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	36	517	3	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925330	114925330	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368331428		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	120	546	0	ENST00000543371.1:c.1408G>A	p.Val470Ile	p.V470I	ENST00000543371	NM_001198531.1	470	Gtt/Att																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482242	87482242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	139	651	0	ENST00000277120.3:c.1529C>T	p.Ser510Leu	p.S510L	ENST00000277120		510	tCg/tTg																																																																														
IL10	3586	MSKCC	GRCh37	1	206945648	206945648	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs570050304		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	146	542	0	ENST00000423557.1:c.133C>T	p.Arg45Ter	p.R45*	ENST00000423557	NM_000572.2	45	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	166	542	3	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307280	65307283	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	95	361	0	ENST00000342505.4:c.2405_2408del	p.Lys802ArgfsTer11	p.K802Rfs*11	ENST00000342505	NM_002227.2	802	aAAGAg/ag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464501	25464501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	214	809	1	ENST00000264709.3:c.2012C>T	p.Thr671Met	p.T671M	ENST00000264709	NM_175629.2	671	aCg/aTg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664448	138664448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	195	414	0	ENST00000330315.3:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000330315	NM_023067.3	373	Cgc/Tgc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326255	62326255	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs559104198		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1272	320	1209	0	ENST00000508582.2:c.3343G>A	p.Asp1115Asn	p.D1115N	ENST00000508582		1115	Gac/Aac																																																																														
FLT4	2324	MSKCC	GRCh37	5	180040015	180040015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564369853		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1424	248	984	1	ENST00000261937.6:c.3427G>A	p.Ala1143Thr	p.A1143T	ENST00000261937	NM_182925.4	1143	Gcc/Acc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841488	156841488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1023556915		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1284	39	908	1	ENST00000524377.1:c.791C>T	p.Thr264Met	p.T264M	ENST00000524377	NM_002529.3	264	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438262	49438262	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	448	677	0	ENST00000301067.7:c.5007del	p.Val1670SerfsTer52	p.V1670Sfs*52	ENST00000301067	NM_003482.3	1669	ccC/cc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151900080	151900081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	38	268	0	ENST00000262189.6:c.4030dup	p.Ile1344AsnfsTer11	p.I1344Nfs*11	ENST00000262189	NM_170606.2	1344	ata/aAta																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248450	212248450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1480034665		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	98	357	1	ENST00000342788.4:c.3817C>T	p.Arg1273Trp	p.R1273W	ENST00000342788	NM_005235.2	1273	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259751	16259751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	171	509	3	ENST00000375759.3:c.7016G>A	p.Arg2339His	p.R2339H	ENST00000375759	NM_015001.2	2339	cGc/cAc																																																																														
BCL6	604	MSKCC	GRCh37	3	187446988	187446988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139744042		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	250	835	1	ENST00000232014.4:c.1205G>A	p.Arg402His	p.R402H	ENST00000232014	NM_001130845.1	402	cGc/cAc																																																																														
MET	4233	MSKCC	GRCh37	7	116399449	116399449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	79	376	1	ENST00000397752.3:c.2269G>T	p.Gly757Trp	p.G757W	ENST00000397752	NM_000245.2	757	Ggg/Tgg																																																																														
SDHB	6390	MSKCC	GRCh37	1	17349147	17349150	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-	rs794728950		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	171	661	1	ENST00000375499.3:c.718_721del	p.Leu240ThrfsTer7	p.L240Tfs*7	ENST00000375499	NM_003000.2	240	CTATac/ac																																																																														
SESN2	83667	MSKCC	GRCh37	1	28600589	28600589	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	212	702	0	ENST00000253063.3:c.940T>C	p.Cys314Arg	p.C314R	ENST00000253063	NM_031459.4	314	Tgc/Cgc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	472143	472143	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752787643		P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	116	443	1	ENST00000399788.2:c.658C>T	p.Arg220Cys	p.R220C	ENST00000399788	NM_001042603.1	220	Cgt/Tgt																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145030	58145030	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	215	656	0	ENST00000257904.6:c.314A>G	p.Asp105Gly	p.D105G	ENST00000257904	NM_000075.3	105	gAc/gGc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435106	110435106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	290	664	0	ENST00000375856.3:c.3295G>T	p.Ala1099Ser	p.A1099S	ENST00000375856	NM_003749.2	1099	Gcc/Tcc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89849473	89849473	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	210	698	0	ENST00000389301.3:c.1508A>G	p.Tyr503Cys	p.Y503C	ENST00000389301	NM_000135.2	503	tAc/tGc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909728	50909728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1213	298	967	0	ENST00000440232.2:c.1448G>A	p.Gly483Asp	p.G483D	ENST00000440232	NM_002691.3	483	gGc/gAc																																																																														
TEK	7010	MSKCC	GRCh37	9	27183547	27183547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	91	420	0	ENST00000380036.4:c.1121G>A	p.Gly374Asp	p.G374D	ENST00000380036	NM_000459.3	374	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519978		P-0040266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	202	962	3	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	GT			P-0040266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	63	283	5	ENST00000257430.4:c.4199delinsGT	p.Ser1400CysfsTer9	p.S1400Cfs*9	ENST00000257430	NM_000038.5	1400	tCg/tGTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0040361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	44	243	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854573		P-0040361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	24	125	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	13	182	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0040361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	10	116	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0040361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	78	340	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139413118	139413118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	71	412	0	ENST00000277541.6:c.1024G>A	p.Ala342Thr	p.A342T	ENST00000277541	NM_017617.3	342	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0040368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	30	183	1	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0040368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	66	189	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs587780070		P-0040368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	203	416	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198179	185198179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	182	335	0	ENST00000265026.3:c.2661C>A	p.Asp887Glu	p.D887E	ENST00000265026	NM_004721.4	887	gaC/gaA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161878	47161878	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	51	415	0	ENST00000409792.3:c.4248A>C	p.Glu1416Asp	p.E1416D	ENST00000409792	NM_014159.6	1416	gaA/gaC																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610656	52610656	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	55	490	0	ENST00000394830.3:c.3517del	p.His1173ThrfsTer20	p.H1173Tfs*20	ENST00000394830	NM_018313.4	1173	Cac/ac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	131	383	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1264586	1264586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs547377569		P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	325	671	0	ENST00000310581.5:c.2776G>A	p.Gly926Ser	p.G926S	ENST00000310581	NM_198253.2	926	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs28934575		P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	206	615	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874247	155874247	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs672601335		P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	92	507	0	ENST00000368323.3:c.284G>C	p.Gly95Ala	p.G95A	ENST00000368323	NM_006912.5	95	gGg/gCg																																																																														
RFWD2	0	MSKCC	GRCh37	1	175958616	175958616	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	55	262	0	ENST00000367669.3:c.1730-1G>C		p.X577_splice	ENST00000367669	NM_022457.5	577																																																																															
BCL6	604	MSKCC	GRCh37	3	187444578	187444578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147650939		P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	341	687	1	ENST00000232014.4:c.1649G>A	p.Arg550His	p.R550H	ENST00000232014	NM_001130845.1	550	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175326	112175339	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAGCCAGGCACA	ATCAGCCAGGCACA	TTC			P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	69	226	2	ENST00000257430.4:c.4035_4048delinsTTC	p.Glu1345AspfsTer5	p.E1345Dfs*5	ENST00000257430	NM_000038.5	1345	gaATCAGCCAGGCACAaa/gaTTCaa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231203	98231203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	97	699	0	ENST00000331920.6:c.2080C>A	p.Gln694Lys	p.Q694K	ENST00000331920	NM_000264.3	694	Cag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	139	398	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	35	386	4	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	132	311	2	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
MPL	4352	MSKCC	GRCh37	1	43803899	43803899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61754776		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	207	460	0	ENST00000372470.3:c.209C>T	p.Pro70Leu	p.P70L	ENST00000372470	NM_005373.2	70	cCg/cTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	65	305	5	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
PTEN	5728	MSKCC	GRCh37	10	89712007	89712007	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	94	265	0	ENST00000371953.3:c.625G>T	p.Gly209Ter	p.G209*	ENST00000371953	NM_000314.4	209	Gga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913275		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	211	619	0	ENST00000263967.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaT																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1388678905		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	216	748	7	ENST00000434045.2:c.686del	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	232	449	9	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	208	572	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	173	471	12	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	142	493	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099397	27099397	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	236	541	0	ENST00000324856.7:c.3634C>T	p.Gln1212Ter	p.Q1212*	ENST00000324856	NM_006015.4	1212	Cag/Tag																																																																														
MST1	4485	MSKCC	GRCh37	3	49723126	49723128	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs751306787		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	316	626	0	ENST00000449682.2:c.1288_1290del	p.Glu430del	p.E430del	ENST00000449682	NM_020998.3	430	GAG/-																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	243	560	2	ENST00000318789.4:c.1240del	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg																																																																														
MGA	23269	MSKCC	GRCh37	15	42054540	42054541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	127	341	0	ENST00000219905.7:c.7731dup	p.Asp2578ArgfsTer45	p.D2578Rfs*45	ENST00000219905	NM_001164273.1	2575	aga/agAa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	252	645	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	274	883	0	ENST00000222270.7:c.520_521dup	p.Lys175GlnfsTer20	p.K175Qfs*20	ENST00000222270	NM_014727.1	172	acc/aCCcc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721106	61721106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	214	524	0	ENST00000401558.2:c.1168G>A	p.Ala390Thr	p.A390T	ENST00000401558	NM_003400.3	390	Gcc/Acc																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180343	38180343	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761769496		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	52	766	0	ENST00000396334.3:c.191C>T	p.Ala64Val	p.A64V	ENST00000396334	NM_002468.4	64	gCg/gTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258272	16258272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	306	687	0	ENST00000375759.3:c.5537G>T	p.Arg1846Met	p.R1846M	ENST00000375759	NM_015001.2	1846	aGg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023008	27023013	+	inframe_deletion	In_Frame_Del	DEL	GGCGGC	GGCGGC	-	rs1414649130		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	31	16	0	ENST00000324856.7:c.123_128del	p.Ala44_Ala45del	p.A44_A45del	ENST00000324856	NM_006015.4	38	gaGGCGGCg/gag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444658	78444659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	208	433	0	ENST00000370768.2:c.30dup	p.Ser11LeufsTer18	p.S11Lfs*18	ENST00000370768	NM_003902.3	10	-/C																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841509	156841509	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1242358987		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	340	784	0	ENST00000524377.1:c.812T>C	p.Val271Ala	p.V271A	ENST00000524377	NM_002529.3	271	gTg/gCg																																																																														
RET	5979	MSKCC	GRCh37	10	43606836	43606836	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs876659821		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	279	909	0	ENST00000355710.3:c.1445A>G	p.His482Arg	p.H482R	ENST00000355710	NM_020975.4	482	cAc/cGc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903759	114903759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	213	547	0	ENST00000543371.1:c.763C>T	p.His255Tyr	p.H255Y	ENST00000543371	NM_001198531.1	255	Cat/Tat																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380343	14380344	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGCCGCCCC			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	89	266	0	ENST00000256196.4:c.65_73dup	p.Gly22_Gly24dup	p.G22_G24dup	ENST00000256196		22	gtg/gGGGGCGGCGtg																																																																														
PGR	5241	MSKCC	GRCh37	11	100922253	100922253	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	125	393	0	ENST00000325455.5:c.2259T>A	p.Tyr753Ter	p.Y753*	ENST00000325455	NM_001202474.3	753	taT/taA																																																																														
PGR	5241	MSKCC	GRCh37	11	100998206	100998206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	96	309	0	ENST00000325455.5:c.1596G>T	p.Glu532Asp	p.E532D	ENST00000325455	NM_001202474.3	532	gaG/gaT																																																																														
ATM	472	MSKCC	GRCh37	11	108190776	108190776	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs730881382		P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	29	257	0	ENST00000278616.4:c.6443A>T	p.Lys2148Ile	p.K2148I	ENST00000278616	NM_000051.3	2148	aAa/aTa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498234	498235	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	93	231	0	ENST00000399788.2:c.23dup	p.Tyr9LeufsTer15	p.Y9Lfs*15	ENST00000399788	NM_001042603.1	8	ggc/ggGc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285825	46285825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	160	446	0	ENST00000334344.6:c.5093C>T	p.Ala1698Val	p.A1698V	ENST00000334344	NM_152641.2	1698	gCa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446482	49446482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	242	468	0	ENST00000301067.7:c.1123C>A	p.Pro375Thr	p.P375T	ENST00000301067	NM_003482.3	375	Cca/Aca																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435309	110435309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	106	161	0	ENST00000375856.3:c.3092C>T	p.Pro1031Leu	p.P1031L	ENST00000375856	NM_003749.2	1031	cCg/cTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43700260	43700260	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	251	616	0	ENST00000382044.4:c.5627A>T	p.Asn1876Ile	p.N1876I	ENST00000382044	NM_001141980.1	1876	aAt/aTt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2106746	2106746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	370	802	0	ENST00000219476.3:c.750G>T	p.Lys250Asn	p.K250N	ENST00000219476	NM_000548.3	250	aaG/aaT																																																																														
CD79B	974	MSKCC	GRCh37	17	62006638	62006638	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	252	652	0	ENST00000392795.3:c.641T>C	p.Leu214Pro	p.L214P	ENST00000392795	NM_001039933.1	214	cTg/cCg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222827	36222828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	367	859	0	ENST00000222270.7:c.5462dup	p.Leu1822ThrfsTer12	p.L1822Tfs*12	ENST00000222270	NM_014727.1	1819	gac/gaCc																																																																														
ATR	545	MSKCC	GRCh37	3	142274851	142274851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	205	556	1	ENST00000350721.4:c.2209C>T	p.His737Tyr	p.H737Y	ENST00000350721	NM_001184.3	737	Cat/Tat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526955	31526955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	289	756	0	ENST00000344624.3:c.85C>T	p.Pro29Ser	p.P29S	ENST00000344624		29	Ccc/Tcc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181849	56181849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	159	318	0	ENST00000399503.3:c.4073C>G	p.Ser1358Trp	p.S1358W	ENST00000399503	NM_005921.1	1358	tCg/tGg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099429	157099430	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCAA			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	51	240	0	ENST00000346085.5:c.371_372insACAGCA	p.Gln130_Gln131dup	p.Q130_Q131dup	ENST00000346085	NM_020732.3	130	-/CAGCAA																																																																														
SMO	6608	MSKCC	GRCh37	7	128852246	128852246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	283	743	0	ENST00000249373.3:c.2318C>T	p.Thr773Ile	p.T773I	ENST00000249373	NM_005631.4	773	aCc/aTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836331	151836331	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	176	441	0	ENST00000262189.6:c.14474A>G	p.Tyr4825Cys	p.Y4825C	ENST00000262189	NM_170606.2	4825	tAc/tGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878639	151878664	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTGGGGTAAGGGGAGGCTGACTAT	ATGTGGGGTAAGGGGAGGCTGACTAT	-			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	193	535	0	ENST00000262189.6:c.6281_6306del	p.Tyr2094SerfsTer5	p.Y2094Sfs*5	ENST00000262189	NM_170606.2	2094	tATAGTCAGCCTCCCCTTACCCCACAT/t																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132781	152132781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	289	489	0	ENST00000262189.6:c.91G>A	p.Ala31Thr	p.A31T	ENST00000262189	NM_170606.2	31	Gcc/Acc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128268597	128268597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	349	779	3	ENST00000265960.3:c.1058G>A	p.Arg353His	p.R353H	ENST00000265960	NM_001006617.1	353	cGc/cAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	144	670	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366939	15366939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	173	697	6	ENST00000263377.2:c.1687del	p.Ser563AlafsTer21	p.S563Afs*21	ENST00000263377	NM_058243.2	563	Agc/gc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	73	371	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	49	371	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	204	787	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
APC	324	MSKCC	GRCh37	5	112174758	112174761	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	39	275	0	ENST00000257430.4:c.3467_3470del	p.Glu1156GlyfsTer8	p.E1156Gfs*8	ENST00000257430	NM_000038.5	1156	gAAGAg/gg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	65	307	3	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444275	50444275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	80	355	0	ENST00000331340.3:c.205C>T	p.Arg69Cys	p.R69C	ENST00000331340	NM_006060.4	69	Cgt/Tgt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9776037	9776037	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	158	801	0	ENST00000377346.4:c.505del	p.Leu169CysfsTer48	p.L169Cfs*48	ENST00000377346	NM_005026.3	167	ttC/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	88	376	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216737	7216742	+	inframe_deletion	In_Frame_Del	DEL	GGCTGT	GGCTGT	-	rs779726141		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	105	536	0	ENST00000380728.2:c.681_686del	p.Gln228_Pro229del	p.Q228_P229del	ENST00000380728		227	ccACAGCCc/ccc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905151	50905151	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137953986		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	224	991	3	ENST00000440232.2:c.433G>A	p.Ala145Thr	p.A145T	ENST00000440232	NM_002691.3	145	Gct/Act																																																																														
MALT1	10892	MSKCC	GRCh37	18	56411684	56411684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1004957123		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	66	420	0	ENST00000348428.3:c.1868C>T	p.Pro623Leu	p.P623L	ENST00000348428	NM_006785.3	623	cCg/cTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	249	508	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	118	631	0	ENST00000358485.4:c.1245del	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	108	466	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs753054998		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	210	931	0	ENST00000301030.4:c.4382_4384del	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	21	74	1	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	64	398	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	153	787	1	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514571	149514571	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs540587683		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	78	386	0	ENST00000261799.4:c.373G>A	p.Val125Met	p.V125M	ENST00000261799	NM_002609.3	125	Gtg/Atg																																																																														
NBN	4683	MSKCC	GRCh37	8	90967511	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	55	293	1	ENST00000265433.3:c.1396dup	p.Arg466LysfsTer5	p.R466Kfs*5	ENST00000265433	NM_002485.4	466	agg/aAgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11107001	11107001	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1050237		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	182	704	0	ENST00000344626.4:c.1706G>A	p.Arg569Gln	p.R569Q	ENST00000344626	NM_003072.3	569	cGg/cAg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63759977	63759977	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	42	338	1	ENST00000279873.7:c.635del	p.Gly212AlafsTer24	p.G212Afs*24	ENST00000279873	NM_032199.2	210	ctG/ct																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	256	638	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039405	47039405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	174	691	1	ENST00000329236.7:c.797G>A	p.Arg266His	p.R266H	ENST00000329236	NM_001204466.1	266	cGc/cAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs774532876		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	227	1030	5	ENST00000294008.3:c.1406del	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118361992	118361992	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782281385		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	62	373	1	ENST00000534358.1:c.4778G>A	p.Arg1593His	p.R1593H	ENST00000534358	NM_005933.3	1593	cGc/cAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16005023	16005023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs775391836		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	212	698	0	ENST00000268712.3:c.2231G>A	p.Arg744Gln	p.R744Q	ENST00000268712	NM_006311.3	744	cGa/cAa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865628	57865628	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	207	1025	0	ENST00000228682.2:c.3109del	p.Leu1037TrpfsTer23	p.L1037Wfs*23	ENST00000228682	NM_005269.2	1035	aaC/aa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626102	12626102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs865905076		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	237	486	0	ENST00000251849.4:c.1858G>A	p.Ala620Thr	p.A620T	ENST00000251849	NM_002880.3	620	Gct/Act																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576881	212576881	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	67	437	0	ENST00000342788.4:c.1018G>T	p.Gly340Ter	p.G340*	ENST00000342788	NM_005235.2	340	Gga/Tga																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937719	36937719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	172	883	0	ENST00000361632.4:c.1019C>T	p.Thr340Ile	p.T340I	ENST00000361632		340	aCa/aTa																																																																														
ATM	472	MSKCC	GRCh37	11	108159797	108159797	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	31	226	0	ENST00000278616.4:c.4207del	p.Ser1403AlafsTer3	p.S1403Afs*3	ENST00000278616	NM_000051.3	1401	ttA/tt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109887	115109887	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762342872		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	198	827	1	ENST00000257566.3:c.1991C>T	p.Ala664Val	p.A664V	ENST00000257566	NM_016569.3	664	gCg/gTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913926	32913927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	67	586	0	ENST00000380152.3:c.5436dup	p.Leu1813ThrfsTer4	p.L1813Tfs*4	ENST00000380152		1812	gaa/gAaa																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871633	35871634	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	97	321	0	ENST00000216797.5:c.872_873del	p.Thr291ArgfsTer15	p.T291Rfs*15	ENST00000216797	NM_020529.2	291	aCA/a																																																																														
MGA	23269	MSKCC	GRCh37	15	42040999	42041001	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	191	672	0	ENST00000219905.7:c.5379_5381del	p.Arg1793del	p.R1793del	ENST00000219905	NM_001164273.1	1793	AGG/-																																																																														
MGA	23269	MSKCC	GRCh37	15	42058313	42058313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	66	325	0	ENST00000219905.7:c.8033G>A	p.Ser2678Asn	p.S2678N	ENST00000219905	NM_001164273.1	2678	aGc/aAc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129039	30129039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	169	830	0	ENST00000263025.4:c.727C>T	p.Pro243Ser	p.P243S	ENST00000263025	NM_002746.2	243	Ccc/Tcc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129720	30129720	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1173483036		P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	230	649	1	ENST00000263025.4:c.493C>T	p.Arg165Ter	p.R165*	ENST00000263025	NM_002746.2	165	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603033	48603033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	98	326	0	ENST00000342988.3:c.1334G>A	p.Arg445Gln	p.R445Q	ENST00000342988	NM_005359.5	445	cGa/cAa																																																																														
CASP8	841	MSKCC	GRCh37	2	202139674	202139674	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	76	287	0	ENST00000358485.4:c.835C>T	p.Gln279Ter	p.Q279*	ENST00000358485	NM_001080125.1	279	Cag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248736	212248737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	62	371	0	ENST00000342788.4:c.3530dup	p.Asn1177LysfsTer9	p.N1177Kfs*9	ENST00000342788	NM_005235.2	1177	aat/aaAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41489031	41489031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	173	548	0	ENST00000263253.7:c.23C>A	p.Pro8Gln	p.P8Q	ENST00000263253	NM_001429.3	8	cCg/cAg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37050344	37050344	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	150	465	0	ENST00000231790.2:c.493del	p.Ala165LeufsTer2	p.A165Lfs*2	ENST00000231790	NM_000249.3	165	Gct/ct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630426	187630426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	213	708	0	ENST00000441802.2:c.556T>A	p.Tyr186Asn	p.Y186N	ENST00000441802	NM_005245.3	186	Tac/Aac																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26021069	26021069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	30	422	0	ENST00000357647.3:c.352G>A	p.Val118Ile	p.V118I	ENST00000357647	NM_003529.2	118	Gtc/Atc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324568	31324568	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	90	499	0	ENST00000412585.2:c.240del	p.Pro81ArgfsTer70	p.P81Rfs*70	ENST00000412585	NM_005514.6	80	ggG/gg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151842262	151842262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	87	367	1	ENST00000262189.6:c.14150C>T	p.Ala4717Val	p.A4717V	ENST00000262189	NM_170606.2	4717	gCc/gTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389318	8389319	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	125	568	0	ENST00000356435.5:c.4299dup	p.Glu1434ArgfsTer33	p.E1434Rfs*33	ENST00000356435		1433	-/C																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324591	31324591	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	131	510	1	ENST00000412585.2:c.217del	p.Ala73ArgfsTer4	p.A73Rfs*4	ENST00000412585	NM_005514.6	73	Gcg/cg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	196	724	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112174658	112174658	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	83	367	0	ENST00000257430.4:c.3367C>T	p.Gln1123Ter	p.Q1123*	ENST00000257430	NM_000038.5	1123	Caa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29687445	29687602	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCAGATGGGGATTTACTTAAAAAAAAGGAACTAAAATAATTTCCTATTTTCCATTACAGCAAACACAAATTCCAGACTATGCTGAGCTTATTGTTAAGTTTCTTGATGCCTTGATTGACACGTACCTGCCTGGAATTGATGAAGAAACCAGTGAAGA	TTCAGATGGGGATTTACTTAAAAAAAAGGAACTAAAATAATTTCCTATTTTCCATTACAGCAAACACAAATTCCAGACTATGCTGAGCTTATTGTTAAGTTTCTTGATGCCTTGATTGACACGTACCTGCCTGGAATTGATGAAGAAACCAGTGAAGA	-			P-0040490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	15	178	0	ENST00000358273.4:c.8161-60_8258del		p.X2721_splice	ENST00000358273	NM_001042492.2	2721																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593487	48593487	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	94	316	0	ENST00000342988.3:c.1238A>T	p.Tyr413Phe	p.Y413F	ENST00000342988	NM_005359.5	413	tAc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0040541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	334	375	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0040541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	17	148	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
APC	324	MSKCC	GRCh37	5	112174833	112174833	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	90	174	1	ENST00000257430.4:c.3542T>A	p.Leu1181Ter	p.L1181*	ENST00000257430	NM_000038.5	1181	tTa/tAa																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39322556	39322556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761415462		P-0040541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	112	312	0	ENST00000373001.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000373001	NM_022157.3	146	Gca/Aca																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121908585		P-0040551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	233	475	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
MAX	4149	MSKCC	GRCh37	14	65544702	65544702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040561-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	364	765	0	ENST00000358664.4:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000358664	NM_002382.4	75	cGa/cAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	68	761	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717678	89717678	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	73	486	0	ENST00000371953.3:c.703G>T	p.Glu235Ter	p.E235*	ENST00000371953	NM_000314.4	235	Gaa/Taa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602620	10602620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	54	758	0	ENST00000171111.5:c.958C>T	p.Arg320Trp	p.R320W	ENST00000171111	NM_203500.1	320	Cgg/Tgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0040568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	75	840	6	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156732	20156732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	40	365	0	ENST00000379607.5:c.25G>T	p.Gly9Cys	p.G9C	ENST00000379607	NM_001412.3	9	Ggt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584827	48584827	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0040568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	30	250	0	ENST00000342988.3:c.904+1G>A		p.X302_splice	ENST00000342988	NM_005359.5	302																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	126	599	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	60	283	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097643	8097643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	41	305	0	ENST00000346208.3:c.25C>T	p.Arg9Cys	p.R9C	ENST00000346208		9	Cgc/Tgc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	201	804	3	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656951	47656951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749849		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	80	373	1	ENST00000233146.2:c.1147C>T	p.Arg383Ter	p.R383*	ENST00000233146	NM_000251.2	383	Cga/Tga																																																																														
RAD52	5893	MSKCC	GRCh37	12	1040397	1040397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35008685		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	117	610	0	ENST00000358495.3:c.175G>A	p.Gly59Arg	p.G59R	ENST00000358495	NM_134424.2	59	Gga/Aga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	93	620	3	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	114	581	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168731	32168731	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1245029988		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	158	896	1	ENST00000375023.3:c.4192G>A	p.Ala1398Thr	p.A1398T	ENST00000375023	NM_004557.3	1398	Gca/Aca																																																																														
MYC	4609	MSKCC	GRCh37	8	128752960	128752960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	136	439	0	ENST00000377970.2:c.1121A>G	p.His374Arg	p.H374R	ENST00000377970	NM_002467.4	374	cAc/cGc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	190	872	8	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
ABL1	25	MSKCC	GRCh37	9	133753910	133753910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149852028		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	115	563	1	ENST00000318560.5:c.1379G>A	p.Arg460His	p.R460H	ENST00000318560	NM_005157.4	460	cGc/cAc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612359	1612359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1341689226		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	191	907	0	ENST00000344749.5:c.1660C>T	p.Arg554Trp	p.R554W	ENST00000344749	NM_001136139.2	554	Cgg/Tgg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	104	526	1	ENST00000331920.6:c.290del	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	153	490	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190718999	190718999	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147084726		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	44	235	0	ENST00000441310.2:c.1001C>T	p.Thr334Met	p.T334M	ENST00000441310	NM_000534.4	334	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542110	187542110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	50	384	1	ENST00000441802.2:c.5630del	p.Pro1877LeufsTer20	p.P1877Lfs*20	ENST00000441802	NM_005245.3	1877	cCt/ct																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	98	524	3	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298120	15298120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376606994		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	171	880	1	ENST00000263388.2:c.1636G>A	p.Val546Met	p.V546M	ENST00000263388	NM_000435.2	546	Gtg/Atg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	139	539	2	ENST00000318789.4:c.1240del	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	183	812	2	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs560057284		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	74	405	1	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519008	66519008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	124	516	0	ENST00000358598.2:c.289C>T	p.Arg97Ter	p.R97*	ENST00000358598	NM_212471.2	97	Cga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	251	903	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	156	650	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	333	1019	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932068	39932068	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140780988		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	188	724	0	ENST00000378444.4:c.2531C>T	p.Pro844Leu	p.P844L	ENST00000378444	NM_001123385.1	844	cCg/cTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557762	21557762	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1172808550		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	165	713	1	ENST00000382592.4:c.2083G>A	p.Ala695Thr	p.A695T	ENST00000382592	NM_014572.2	695	Gcc/Acc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621158	1621158	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	123	873	0	ENST00000344749.5:c.988del	p.Asp330MetfsTer64	p.D330Mfs*64	ENST00000344749	NM_001136139.2	330	Gat/at																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190666	11190666	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762176419		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	168	736	1	ENST00000361445.4:c.5533G>A	p.Glu1845Lys	p.E1845K	ENST00000361445	NM_004958.3	1845	Gag/Aag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350270	15350270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760622695		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	187	871	1	ENST00000263377.2:c.3509C>T	p.Pro1170Leu	p.P1170L	ENST00000263377	NM_058243.2	1170	cCg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448408	49448408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs797045661		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	121	707	1	ENST00000301067.7:c.303del	p.Ser102AlafsTer28	p.S102Afs*28	ENST00000301067	NM_003482.3	101	ggG/gg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26022303	26022304	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTG	rs750598660		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	90	604	0	ENST00000435504.4:c.351_353dup	p.Ser118dup	p.S118dup	ENST00000435504		118	agt/agCAGt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10264977	10264977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1486893166		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	73	413	1	ENST00000340748.4:c.1963G>A	p.Val655Ile	p.V655I	ENST00000340748		655	Gtc/Atc																																																																														
TERT	7015	MSKCC	GRCh37	5	1282719	1282719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776459827		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	106	630	0	ENST00000310581.5:c.1594G>A	p.Ala532Thr	p.A532T	ENST00000310581	NM_198253.2	532	Gca/Aca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629457	187629457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	166	668	2	ENST00000441802.2:c.1525C>T	p.Pro509Ser	p.P509S	ENST00000441802	NM_005245.3	509	Ccg/Tcg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467088	25467088	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs899717364		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	187	777	0	ENST00000264709.3:c.1787G>A	p.Arg596Gln	p.R596Q	ENST00000264709	NM_175629.2	596	cGg/cAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258058	16258058	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766847660		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	117	434	1	ENST00000375759.3:c.5323G>A	p.Glu1775Lys	p.E1775K	ENST00000375759	NM_015001.2	1775	Gaa/Aaa																																																																														
RET	5979	MSKCC	GRCh37	10	43612056	43612056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	120	891	1	ENST00000355710.3:c.2161C>T	p.Arg721Trp	p.R721W	ENST00000355710	NM_020975.4	721	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445334	49445334	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs893615522		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	231	965	1	ENST00000301067.7:c.2132C>T	p.Pro711Leu	p.P711L	ENST00000301067	NM_003482.3	711	cCg/cTg																																																																														
RAD51	5888	MSKCC	GRCh37	15	41020952	41020952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	119	612	2	ENST00000267868.3:c.574G>A	p.Ala192Thr	p.A192T	ENST00000267868	NM_002875.4	192	Gct/Act																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15978994	15978994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	110	446	0	ENST00000268712.3:c.3524C>A	p.Thr1175Asn	p.T1175N	ENST00000268712	NM_006311.3	1175	aCt/aAt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10305503	10305503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	119	499	0	ENST00000340748.4:c.73C>A	p.Arg25Ser	p.R25S	ENST00000340748		25	Cgc/Agc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703577	47703631	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTTTGTGCCATGTGAGTCAGCAGAAGTGTCCATTGTGGACTGCATCTTAGCCC	TGTTTTGTGCCATGTGAGTCAGCAGAAGTGTCCATTGTGGACTGCATCTTAGCCC	-			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	81	628	0	ENST00000233146.2:c.2077_2131del	p.Cys693GlufsTer2	p.C693Efs*2	ENST00000233146	NM_000251.2	693	TGTTTTGTGCCATGTGAGTCAGCAGAAGTGTCCATTGTGGACTGCATCTTAGCCCga/ga																																																																														
TOP1	7150	MSKCC	GRCh37	20	39709845	39709847	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	55	263	0	ENST00000361337.2:c.475_477del	p.Lys159del	p.K159del	ENST00000361337	NM_003286.2	158	AAG/-																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655236	45655236	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140894768		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	354	724	1	ENST00000407780.3:c.616G>A	p.Ala206Thr	p.A206T	ENST00000407780	NM_001283052.1	206	Gca/Aca																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127230	22127230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	123	592	0	ENST00000215832.6:c.898A>G	p.Lys300Glu	p.K300E	ENST00000215832	NM_002745.4	300	Aag/Gag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933192	49933192	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769560872		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	118	671	0	ENST00000296474.3:c.2918C>T	p.Ala973Val	p.A973V	ENST00000296474	NM_002447.2	973	gCg/gTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52613163	52613163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	118	524	0	ENST00000394830.3:c.3365A>G	p.Tyr1122Cys	p.Y1122C	ENST00000394830	NM_018313.4	1122	tAc/tGc																																																																														
MITF	4286	MSKCC	GRCh37	3	70014383	70014383	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780036017		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	144	553	0	ENST00000352241.4:c.1547C>T	p.Thr516Met	p.T516M	ENST00000352241	NM_198159.2	516	aCg/aTg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920289	1920289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146822227		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	163	735	0	ENST00000382891.5:c.1349G>A	p.Arg450Gln	p.R450Q	ENST00000382891	NM_133335.3	450	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112177653	112177653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	43	343	0	ENST00000257430.4:c.6362C>G	p.Ala2121Gly	p.A2121G	ENST00000257430	NM_000038.5	2121	gCt/gGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176718971	176718971	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758308969		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	40	229	0	ENST00000439151.2:c.6275C>T	p.Thr2092Met	p.T2092M	ENST00000439151	NM_022455.4	2092	aCg/aTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670543	30670543	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	109	552	0	ENST00000376406.3:c.5977C>T	p.Arg1993Ter	p.R1993*	ENST00000376406	NM_014641.2	1993	Cga/Tga																																																																														
TAP1	6890	MSKCC	GRCh37	6	32820834	32820834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	171	898	0	ENST00000354258.4:c.760G>A	p.Val254Met	p.V254M	ENST00000354258	NM_000593.5	254	Gtg/Atg																																																																														
SESN1	27244	MSKCC	GRCh37	6	109415036	109415036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	88	621	0	ENST00000436639.2:c.241G>A	p.Val81Met	p.V81M	ENST00000436639	NM_014454.2	81	Gtg/Atg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527935	157527935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs911169696		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	108	631	3	ENST00000346085.5:c.5660C>T	p.Ala1887Val	p.A1887V	ENST00000346085	NM_020732.3	1887	gCa/gTa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729847	41729847	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	89	448	0	ENST00000242208.4:c.682C>T	p.Gln228Ter	p.Q228*	ENST00000242208	NM_002192.2	228	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140534597	140534597	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749247588		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	34	473	0	ENST00000288602.6:c.316G>A	p.Gly106Arg	p.G106R	ENST00000288602	NM_004333.4	106	Gga/Aga																																																																														
SYK	6850	MSKCC	GRCh37	9	93626849	93626869	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTCTTACTTTTTTCTCTTTCA	TTCTTACTTTTTTCTCTTTCA	-			P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	36	330	0	ENST00000375746.1:c.718-22_718-2del		p.X240_splice	ENST00000375746	NM_001174167.1	240																																																																															
ABL1	25	MSKCC	GRCh37	9	133729508	133729508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371791060		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	144	608	0	ENST00000318560.5:c.137C>T	p.Ala46Val	p.A46V	ENST00000318560	NM_005157.4	46	gCt/gTt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137321001	137321001	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1343863109		P-0040575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	182	885	2	ENST00000481739.1:c.958G>A	p.Val320Met	p.V320M	ENST00000481739	NM_002957.4	320	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	326	522	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37665993	37665993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	396	317	0	ENST00000447079.4:c.2645G>A	p.Arg882Gln	p.R882Q	ENST00000447079	NM_015083.1	882	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	188	626	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0040630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	134	306	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729399	41729399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	106	615	0	ENST00000242208.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000242208	NM_002192.2	377	cGc/cAc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4101266	4101266	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1057517898		P-0040630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	146	695	0	ENST00000262948.5:c.541T>A	p.Leu181Met	p.L181M	ENST00000262948	NM_030662.3	181	Ttg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	82	418	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	122	540	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	122	540	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0040632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	137	675	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0040632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	31	226	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0040702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	488	707	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790168	40790168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745346735		P-0040702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	54	643	0	ENST00000373198.4:c.2563G>A	p.Gly855Arg	p.G855R	ENST00000373198	NM_133170.3	855	Ggg/Agg																																																																														
ATM	472	MSKCC	GRCh37	11	108203626	108203626	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	29	168	0	ENST00000278616.4:c.7926A>T	p.Arg2642Ser	p.R2642S	ENST00000278616	NM_000051.3	2642	agA/agT																																																																														
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	179	415	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	105	311	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575083	48575083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	91	261	0	ENST00000342988.3:c.277G>A	p.Val93Met	p.V93M	ENST00000342988	NM_005359.5	93	Gtg/Atg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480361	89480361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	95	257	1	ENST00000336596.2:c.2198G>T	p.Gly733Val	p.G733V	ENST00000336596	NM_005233.5	733	gGc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112175672	112175672	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	87	275	0	ENST00000257430.4:c.4381G>T	p.Glu1461Ter	p.E1461*	ENST00000257430	NM_000038.5	1461	Gaa/Taa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527809	157527809	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs374035954		P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	111	344	0	ENST00000346085.5:c.5534G>A	p.Arg1845His	p.R1845H	ENST00000346085	NM_020732.3	1845	cGc/cAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140494163	140494163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	223	595	0	ENST00000288602.6:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000288602	NM_004333.4	362	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0040751-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	203	684	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0040751-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	145	466	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440635	56440635	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0040751-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	391	612	1	ENST00000407977.2:c.582+1G>A		p.X194_splice	ENST00000407977		194																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	11	387	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913233		P-0040785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	349	786	0	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001438	29001438	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1473309404		P-0040785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	45	304	0	ENST00000282397.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000282397	NM_002019.4	432	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104619	69104619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753704		P-0040785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	86	648	0	ENST00000288368.4:c.4463C>T	p.Ser1488Leu	p.S1488L	ENST00000288368	NM_024870.2	1488	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108143500	108143500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751714261		P-0040785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	154	430	0	ENST00000278616.4:c.3205C>T	p.Pro1069Ser	p.P1069S	ENST00000278616	NM_000051.3	1069	Cct/Tct																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25994376	25994376	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs540066802		P-0040785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	71	353	0	ENST00000435504.4:c.437C>T	p.Ser146Leu	p.S146L	ENST00000435504		146	tCa/tTa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99160372	99160372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	110	461	0	ENST00000074304.5:c.851C>T	p.Ser284Phe	p.S284F	ENST00000074304	NM_001134224.1	284	tCc/tTc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288597	33288597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	77	392	0	ENST00000374542.5:c.955G>A	p.Asp319Asn	p.D319N	ENST00000374542	NM_001141970.1	319	Gat/Aat																																																																														
ETV1	2115	MSKCC	GRCh37	7	14026311	14026311	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	64	277	0	ENST00000405192.2:c.134-1G>A		p.X45_splice	ENST00000405192	NM_001163147.1	45																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70978688	70978688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	125	661	1	ENST00000276594.2:c.965G>A	p.Gly322Glu	p.G322E	ENST00000276594	NM_024504.3	322	gGg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0040802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	1079	510	2	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0040802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	370	835	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	29445412	29445412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748493584		P-0040802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	325	892	2	ENST00000389048.3:c.3421G>A	p.Asp1141Asn	p.D1141N	ENST00000389048	NM_004304.4	1141	Gac/Aac																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027638	48027638	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	83	343	0	ENST00000234420.5:c.2516A>G	p.Asp839Gly	p.D839G	ENST00000234420	NM_000179.2	839	gAc/gGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	66	501	0				ENST00000310581	NM_198253.2																																																																																
ROS1	6098	MSKCC	GRCh37	6	117609813	117609813	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761155034		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	87	638	2	ENST00000368508.3:c.6886G>A	p.Glu2296Lys	p.E2296K	ENST00000368508	NM_002944.2	2296	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589913	212589913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	92	502	0	ENST00000342788.4:c.629G>A	p.Arg210Lys	p.R210K	ENST00000342788	NM_005235.2	210	aGg/aAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170021	32170021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	157	1030	1	ENST00000375023.3:c.3587G>A	p.Gly1196Glu	p.G1196E	ENST00000375023	NM_004557.3	1196	gGa/gAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423632	88423632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1478926904		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	73	586	0	ENST00000360948.2:c.2203C>T	p.Arg735Cys	p.R735C	ENST00000360948	NM_001012338.2	735	Cgc/Tgc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166491	118166491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	68	484	0	ENST00000369448.3:c.1001C>T	p.Ser334Phe	p.S334F	ENST00000369448	NM_017709.3	334	tCc/tTc																																																																														
AR	367	MSKCC	GRCh37	X	66931523	66931523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769862197		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	96	367	0	ENST00000374690.3:c.2165C>T	p.Ala722Val	p.A722V	ENST00000374690	NM_000044.3	722	gCc/gTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405216	139405216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	261	911	0	ENST00000277541.6:c.2629C>T	p.Pro877Ser	p.P877S	ENST00000277541	NM_017617.3	877	Ccg/Tcg																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854562		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	62	472	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371953	55371953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	88	498	0	ENST00000297316.4:c.643G>A	p.Asp215Asn	p.D215N	ENST00000297316	NM_022454.3	215	Gac/Aac																																																																														
ATR	545	MSKCC	GRCh37	3	142281334	142281334	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754292203		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	201	559	0	ENST00000350721.4:c.910C>T	p.Pro304Ser	p.P304S	ENST00000350721	NM_001184.3	304	Ccc/Tcc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486824	56486824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1023742896		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	128	695	0	ENST00000267101.3:c.1238C>T	p.Ser413Phe	p.S413F	ENST00000267101	NM_001982.3	413	tCc/tTc																																																																														
TEK	7010	MSKCC	GRCh37	9	27169625	27169625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs775884054		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	118	708	4	ENST00000380036.4:c.626G>A	p.Arg209Gln	p.R209Q	ENST00000380036	NM_000459.3	209	cGg/cAg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024380	31024380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201302084		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	135	837	0	ENST00000375687.4:c.3865C>T	p.Arg1289Trp	p.R1289W	ENST00000375687	NM_015338.5	1289	Cgg/Tgg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342551	118342551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	32	334	0	ENST00000534358.1:c.677C>T	p.Pro226Leu	p.P226L	ENST00000534358	NM_005933.3	226	cCc/cTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546763	9546763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	52	428	0	ENST00000353224.5:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000353224	NM_177990.2	420	tCc/tTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509966	106509966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	64	628	0	ENST00000359195.3:c.1960G>A	p.Asp654Asn	p.D654N	ENST00000359195	NM_002649.2	654	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858351	9858351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	73	515	0	ENST00000330684.3:c.3050C>T	p.Ser1017Phe	p.S1017F	ENST00000330684	NM_001134407.1	1017	tCc/tTc																																																																														
MET	4233	MSKCC	GRCh37	7	116397514	116397514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	244	433	0	ENST00000397752.3:c.1886C>T	p.Ala629Val	p.A629V	ENST00000397752	NM_000245.2	629	gCc/gTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354228	15354229	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	152	972	2	ENST00000263377.2:c.2651_2652delinsTT	p.Pro884Leu	p.P884L	ENST00000263377	NM_058243.2	884	cCC/cTT																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748165	41748165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	108	621	0	ENST00000226382.2:c.604C>T	p.Pro202Ser	p.P202S	ENST00000226382	NM_003924.3	202	Ccc/Tcc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846191	156846191	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	106	746	0	ENST00000524377.1:c.1633-1G>A		p.X545_splice	ENST00000524377	NM_002529.3	545																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749987	162749987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	71	508	0	ENST00000367921.3:c.2519C>T	p.Pro840Leu	p.P840L	ENST00000367921	NM_006182.2	840	cCc/cTc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193117012	193117012	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	77	347	0	ENST00000367435.3:c.745A>T	p.Ile249Phe	p.I249F	ENST00000367435	NM_024529.4	249	Att/Ttt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577244	64577244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	143	949	0	ENST00000337652.1:c.338C>T	p.Ser113Phe	p.S113F	ENST00000337652	NM_130803.2	113	tCc/tTc																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518572	69518572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	130	658	0	ENST00000294312.3:c.73C>T	p.Leu25Phe	p.L25F	ENST00000294312	NM_005117.2	25	Ctc/Ttc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18524151	18524151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	73	483	0	ENST00000266497.5:c.1663G>A	p.Glu555Lys	p.E555K	ENST00000266497		555	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18576910	18576910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	86	627	0	ENST00000266497.5:c.2318C>T	p.Pro773Leu	p.P773L	ENST00000266497		773	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434621	49434621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	162	1062	0	ENST00000301067.7:c.6932C>T	p.Ser2311Phe	p.S2311F	ENST00000301067	NM_003482.3	2311	tCc/tTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911028	32911028	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs867554960		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	65	444	0	ENST00000380152.3:c.2536T>C	p.Ser846Pro	p.S846P	ENST00000380152		846	Tca/Cca																																																																														
RB1	5925	MSKCC	GRCh37	13	48878106	48878107	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	41	119	0	ENST00000267163.4:c.58_59delinsTT	p.Pro20Phe	p.P20F	ENST00000267163	NM_000321.2	20	CCc/TTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434390	110434390	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	124	816	0	ENST00000375856.3:c.4011del	p.Glu1338SerfsTer19	p.E1338Sfs*19	ENST00000375856	NM_003749.2	1337	aaA/aa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226162	2226162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	129	1060	0	ENST00000326181.6:c.1859C>T	p.Ser620Phe	p.S620F	ENST00000326181	NM_032271.2	620	tCc/tTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639791	3639791	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140103960		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	167	948	1	ENST00000294008.3:c.3848C>T	p.Ala1283Val	p.A1283V	ENST00000294008	NM_032444.2	1283	gCc/gTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3831299	3831299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	67	378	0	ENST00000262367.5:c.1582C>T	p.Pro528Ser	p.P528S	ENST00000262367	NM_004380.2	528	Cca/Tca																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923429	9923429	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	108	640	0	ENST00000330684.3:c.1858C>T	p.Gln620Ter	p.Q620*	ENST00000330684	NM_001134407.1	620	Cag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274099	10274099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	136	836	0	ENST00000330684.3:c.170C>T	p.Pro57Leu	p.P57L	ENST00000330684	NM_001134407.1	57	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829373	72829373	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766465283		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	114	736	0	ENST00000268489.5:c.7208C>T	p.Ser2403Phe	p.S2403F	ENST00000268489	NM_006885.3	2403	tCc/tTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349676	89349676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773172347		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	167	879	0	ENST00000301030.4:c.3274C>T	p.Pro1092Ser	p.P1092S	ENST00000301030	NM_001256183.1	1092	Cct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29562935	29562936	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	45	396	0	ENST00000358273.4:c.3871-1_3871delinsAA		p.X1291_splice	ENST00000358273	NM_001042492.2	1291																																																																															
MSI2	124540	MSKCC	GRCh37	17	55339525	55339525	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	246	726	0	ENST00000284073.2:c.284T>C	p.Val95Ala	p.V95A	ENST00000284073	NM_138962.2	95	gTt/gCt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223355	2223355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	148	957	0	ENST00000398665.3:c.3466C>T	p.Pro1156Ser	p.P1156S	ENST00000398665	NM_032482.2	1156	Ccc/Tcc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375522	15375522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	202	999	1	ENST00000263377.2:c.905C>T	p.Pro302Leu	p.P302L	ENST00000263377	NM_058243.2	302	cCc/cTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18971786	18971786	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	124	737	0	ENST00000262803.5:c.2452T>C	p.Tyr818His	p.Y818H	ENST00000262803	NM_002911.3	818	Tac/Cac																																																																														
ERF	2077	MSKCC	GRCh37	19	42753003	42753003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	164	898	0	ENST00000222329.4:c.1261C>T	p.Pro421Ser	p.P421S	ENST00000222329	NM_006494.2	421	Ccg/Tcg																																																																														
ALK	238	MSKCC	GRCh37	2	29541268	29541268	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	57	471	0	ENST00000389048.3:c.1549C>T	p.His517Tyr	p.H517Y	ENST00000389048	NM_004304.4	517	Cat/Tat																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607769	46607769	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs927242408		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	290	976	0	ENST00000263734.3:c.1958C>T	p.Ala653Val	p.A653V	ENST00000263734	NM_001430.4	653	gCc/gTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306555	41306556	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	100	719	0	ENST00000373198.4:c.1103_1104delinsAC	p.Gly368Asp	p.G368D	ENST00000373198	NM_133170.3	368	gGG/gAC																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140789	37140789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	68	555	1	ENST00000373509.5:c.625C>T	p.Pro209Ser	p.P209S	ENST00000373509	NM_002648.3	209	Cct/Tct																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552866	106552866	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	168	951	1	ENST00000369096.4:c.831A>T	p.Glu277Asp	p.E277D	ENST00000369096	NM_001198.3	277	gaA/gaT																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137522130	137522130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	28	208	0	ENST00000367739.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000367739	NM_000416.2	250	cCa/cTa																																																																														
PARK2	0	MSKCC	GRCh37	6	161781180	161781180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	132	755	0	ENST00000366898.1:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000366898	NM_004562.2	409	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444485	50444485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	43	341	0	ENST00000331340.3:c.415C>T	p.His139Tyr	p.H139Y	ENST00000331340	NM_006060.4	139	Cac/Tac																																																																														
PREX2	80243	MSKCC	GRCh37	8	68930098	68930098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	81	459	0	ENST00000288368.4:c.159G>A	p.Met53Ile	p.M53I	ENST00000288368	NM_024870.2	53	atG/atA																																																																														
NBN	4683	MSKCC	GRCh37	8	90965642	90965642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	56	388	0	ENST00000265433.3:c.1675G>A	p.Glu559Lys	p.E559K	ENST00000265433	NM_002485.4	559	Gaa/Aaa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412698	63412721	+	inframe_deletion	In_Frame_Del	DEL	CAGCCACAGCTTTCTCTGTGGCTC	CAGCCACAGCTTTCTCTGTGGCTC	-	rs768930991		P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	99	325	0	ENST00000330258.3:c.446_469del	p.Gly149_Ala156del	p.G149_A156del	ENST00000330258	NM_152424.3	149	gGAGCCACAGAGAAAGCTGTGGCTGag/gag																																																																														
FAM58A	0	MSKCC	GRCh37	X	152861590	152861596	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGTAA	ATGGTAA	-			P-0040819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	124	406	0	ENST00000406277.2:c.156_162del	p.Tyr53SerfsTer15	p.Y53Sfs*15	ENST00000406277	NM_152274.4	52	atTTACCAT/at																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660414	227660414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	33	589	1	ENST00000305123.5:c.3041A>G	p.Asp1014Gly	p.D1014G	ENST00000305123	NM_005544.2	1014	gAc/gGc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	150	669	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	23	643	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303199	15303199	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769955930		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	86	820	2	ENST00000263388.2:c.329G>A	p.Arg110His	p.R110H	ENST00000263388	NM_000435.2	110	cGt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55564642	55564642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	48	560	1	ENST00000288135.5:c.530G>A	p.Arg177His	p.R177H	ENST00000288135	NM_000222.2	177	cGc/cAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1181132297		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	40	327	0	ENST00000342505.4:c.1016del	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	20	594	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563107	21563107	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs542237961		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	61	716	0	ENST00000382592.4:c.812G>A	p.Arg271His	p.R271H	ENST00000382592	NM_014572.2	271	cGc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972504	32972504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	64	603	1	ENST00000380152.3:c.9854C>T	p.Pro3285Leu	p.P3285L	ENST00000380152		3285	cCc/cTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	17	181	0	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																																																														
ERG	2078	MSKCC	GRCh37	21	39755666	39755666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	57	637	0	ENST00000288319.7:c.1099C>T	p.Arg367Cys	p.R367C	ENST00000288319	NM_182918.3	367	Cgc/Tgc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420308	88420308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367985043		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	50	482	1	ENST00000360948.2:c.2378G>A	p.Arg793Gln	p.R793Q	ENST00000360948	NM_001012338.2	793	cGa/cAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665274	176665274	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121908070		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	37	330	0	ENST00000439151.2:c.3958C>T	p.Arg1320Ter	p.R1320*	ENST00000439151	NM_022455.4	1320	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	85	500	5	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587782596		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	44	656	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448564	89448564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1184230536		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	81	500	0	ENST00000336596.2:c.1528C>T	p.Arg510Ter	p.R510*	ENST00000336596	NM_005233.5	510	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880887	134880887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	50	445	0	ENST00000398015.3:c.1450G>A	p.Ala484Thr	p.A484T	ENST00000398015	NM_004441.4	484	Gcc/Acc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416800	121416800	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770695671		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	126	883	1	ENST00000257555.6:c.229G>A	p.Asp77Asn	p.D77N	ENST00000257555		77	Gat/Aat																																																																														
POLE	5426	MSKCC	GRCh37	12	133248860	133248860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116260568		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	91	662	0	ENST00000320574.5:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000320574	NM_006231.2	579	Cgc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	67	471	2	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	34	554	0	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692901	89692901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs786204929		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	12	468	1	ENST00000371953.3:c.385G>A	p.Gly129Arg	p.G129R	ENST00000371953	NM_000314.4	129	Gga/Aga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434164	121434164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	85	734	0	ENST00000257555.6:c.1055C>T	p.Ser352Phe	p.S352F	ENST00000257555		352	tCc/tTc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908877	101908877	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1469620887		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	36	485	0	ENST00000374994.4:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000374994	NM_004612.2	414	cGa/cAa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391890	139391890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	80	819	3	ENST00000277541.6:c.6301G>A	p.Ala2101Thr	p.A2101T	ENST00000277541	NM_017617.3	2101	Gca/Aca																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222760	5222760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199829286		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	86	450	0	ENST00000357368.4:c.3043C>T	p.Arg1015Cys	p.R1015C	ENST00000357368	NM_002850.3	1015	Cgc/Tgc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134687	41134687	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760747458		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	29	400	0	ENST00000379561.5:c.941G>A	p.Arg314His	p.R314H	ENST00000379561	NM_002015.3	314	cGc/cAc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971367	13971367	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755892534		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	73	401	1	ENST00000405192.2:c.562C>T	p.Arg188Cys	p.R188C	ENST00000405192	NM_001163147.1	188	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8338945	8338945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	29	405	0	ENST00000356435.5:c.5356G>A	p.Glu1786Lys	p.E1786K	ENST00000356435		1786	Gaa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142168368	142168368	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1034620994		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	32	399	1	ENST00000350721.4:c.7838C>T	p.Pro2613Leu	p.P2613L	ENST00000350721	NM_001184.3	2613	cCg/cTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5238951	5238951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1237159914		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	61	394	0	ENST00000357368.4:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000357368	NM_002850.3	610	Cgg/Tgg																																																																														
SRC	6714	MSKCC	GRCh37	20	36012617	36012617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367543238		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	41	347	0	ENST00000358208.4:c.61G>A	p.Ala21Thr	p.A21T	ENST00000358208		21	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101375	27101375	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	60	487	2	ENST00000324856.7:c.4661del	p.Pro1554HisfsTer11	p.P1554Hfs*11	ENST00000324856	NM_006015.4	1553	Ccc/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25368433	25368434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	25	285	1	ENST00000256078.4:c.511dup	p.Ile171AsnfsTer14	p.I171Nfs*14	ENST00000256078	NM_033360.2	171	atc/aAtc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178554	32178554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759200326		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	64	590	3	ENST00000375023.3:c.2840C>T	p.Ala947Val	p.A947V	ENST00000375023	NM_004557.3	947	gCc/gTc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942055	17942055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	82	688	0	ENST00000458235.1:c.2960G>A	p.Gly987Asp	p.G987D	ENST00000458235	NM_000215.3	987	gGc/gAc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265049	46265049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	39	480	0	ENST00000371998.3:c.1924del	p.Leu642Ter	p.L642*	ENST00000371998		640	tCc/tc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892293	9892293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs796052550		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	42	371	0	ENST00000330684.3:c.2197G>A	p.Ala733Thr	p.A733T	ENST00000330684	NM_001134407.1	733	Gca/Aca																																																																														
CUL3	8452	MSKCC	GRCh37	2	225379486	225379486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	23	390	0	ENST00000264414.4:c.382C>T	p.Arg128Cys	p.R128C	ENST00000264414	NM_003590.4	128	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830135	72830135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	75	556	1	ENST00000268489.5:c.6446G>A	p.Arg2149His	p.R2149H	ENST00000268489	NM_006885.3	2149	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176687001	176687001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	41	399	0	ENST00000439151.2:c.4978C>T	p.Arg1660Cys	p.R1660C	ENST00000439151	NM_022455.4	1660	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828024	72828024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200701402		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	98	744	1	ENST00000268489.5:c.8557G>A	p.Ala2853Thr	p.A2853T	ENST00000268489	NM_006885.3	2853	Gca/Aca																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562629	95562629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	48	360	0	ENST00000343455.3:c.4628C>T	p.Ser1543Phe	p.S1543F	ENST00000343455	NM_177438.2	1543	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396886	139396886	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752754662		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	59	524	0	ENST00000277541.6:c.5222C>T	p.Ala1741Val	p.A1741V	ENST00000277541	NM_017617.3	1741	gCg/gTg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	83	876	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885286	111885286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770836648		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	69	612	2	ENST00000341259.2:c.1174C>T	p.Arg392Trp	p.R392W	ENST00000341259	NM_005475.2	392	Cgg/Tgg																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612801	228612801	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369460992		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	65	642	1	ENST00000366696.1:c.226G>A	p.Ala76Thr	p.A76T	ENST00000366696	NM_003493.2	76	Gct/Act																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30105512	30105512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768104173		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	79	585	0	ENST00000331968.5:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000331968	NM_002742.2	392	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1279530	1279530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	68	833	0	ENST00000310581.5:c.2006G>A	p.Arg669Gln	p.R669Q	ENST00000310581	NM_198253.2	669	cGg/cAg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247617	123247617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	41	364	0	ENST00000358487.5:c.1874G>A	p.Arg625Gln	p.R625Q	ENST00000358487	NM_000141.4	625	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125832	47125832	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	22	230	2	ENST00000409792.3:c.5438del	p.Asn1813IlefsTer25	p.N1813Ifs*25	ENST00000409792	NM_014159.6	1813	aAt/at																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11958212	11958212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760186886		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	44	301	0	ENST00000353533.5:c.122G>A	p.Arg41His	p.R41H	ENST00000353533	NM_003010.3	41	cGc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190747	11190747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759603938		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	84	691	2	ENST00000361445.4:c.5452C>T	p.Arg1818Cys	p.R1818C	ENST00000361445	NM_004958.3	1818	Cgt/Tgt																																																																														
IRF4	3662	MSKCC	GRCh37	6	395001	395001	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1300046652		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	43	402	3	ENST00000380956.4:c.402del	p.Gly135GlufsTer14	p.G135Efs*14	ENST00000380956	NM_001195286.1	133	Aaa/aa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67670706	67670706	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762060506		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	70	543	1	ENST00000264010.4:c.1951C>T	p.Arg651Trp	p.R651W	ENST00000264010	NM_006565.3	651	Cgg/Tgg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434967	110434967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	80	604	0	ENST00000375856.3:c.3434G>A	p.Arg1145His	p.R1145H	ENST00000375856	NM_003749.2	1145	cGc/cAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374486	118374486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	26	391	0	ENST00000534358.1:c.7879C>T	p.Arg2627Cys	p.R2627C	ENST00000534358	NM_005933.3	2627	Cgt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800901	18800901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767127006		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	30	390	0	ENST00000266497.5:c.4277G>A	p.Arg1426Gln	p.R1426Q	ENST00000266497		1426	cGa/cAa																																																																														
SYK	6850	MSKCC	GRCh37	9	93606314	93606314	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs16906862		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	78	702	1	ENST00000375746.1:c.134G>A	p.Arg45His	p.R45H	ENST00000375746	NM_001174167.1	45	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16245932	16245932	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760738868		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	35	296	0	ENST00000375759.3:c.1555G>A	p.Val519Met	p.V519M	ENST00000375759	NM_015001.2	519	Gtg/Atg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523142	176523142	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778323767		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	69	695	1	ENST00000292408.4:c.1906G>A	p.Gly636Ser	p.G636S	ENST00000292408	NM_213647.1	636	Ggc/Agc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216702	36216702	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748120825		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	55	553	0	ENST00000222270.7:c.3868C>T	p.Arg1290Cys	p.R1290C	ENST00000222270	NM_014727.1	1290	Cgc/Tgc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942514	17942514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1490602805		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	68	681	1	ENST00000458235.1:c.2774G>A	p.Arg925His	p.R925H	ENST00000458235	NM_000215.3	925	cGc/cAc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45795060	45795060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374655042		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	73	543	0	ENST00000372115.3:c.1526G>A	p.Arg509His	p.R509H	ENST00000372115	NM_001048171.1	509	cGc/cAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78867626	78867626	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781190662		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	65	711	0	ENST00000306801.3:c.2362C>T	p.Arg788Cys	p.R788C	ENST00000306801	NM_020761.2	788	Cgc/Tgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139410000	139410000	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369522885		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	102	756	1	ENST00000277541.6:c.1838G>A	p.Arg613His	p.R613H	ENST00000277541	NM_017617.3	613	cGc/cAc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008056	29008056	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755339233		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	24	353	1	ENST00000282397.4:c.713G>A	p.Arg238His	p.R238H	ENST00000282397	NM_002019.4	238	cGc/cAc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934985	49934985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768318968		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	62	697	0	ENST00000296474.3:c.2014G>A	p.Gly672Ser	p.G672S	ENST00000296474	NM_002447.2	672	Ggc/Agc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900336	3900336	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148781922		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	66	654	0	ENST00000262367.5:c.760G>A	p.Ala254Thr	p.A254T	ENST00000262367	NM_004380.2	254	Gcg/Acg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39262616	39262616	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779162761		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	37	424	0	ENST00000402219.2:c.890C>T	p.Ser297Leu	p.S297L	ENST00000402219	NM_005633.3	297	tCg/tTg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735359	204735359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	25	306	0	ENST00000302823.3:c.160G>A	p.Ala54Thr	p.A54T	ENST00000302823	NM_005214.4	54	Gcc/Acc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053171	180053171	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369939230		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	60	818	2	ENST00000261937.6:c.1198G>A	p.Ala400Thr	p.A400T	ENST00000261937	NM_182925.4	400	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845504	151845504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	44	545	1	ENST00000262189.6:c.13508G>A	p.Cys4503Tyr	p.C4503Y	ENST00000262189	NM_170606.2	4503	tGc/tAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48951105	48951105	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	23	291	0	ENST00000267163.4:c.1267G>T	p.Gly423Ter	p.G423*	ENST00000267163	NM_000321.2	423	Gga/Tga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63545705	63545705	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751143605		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	74	445	1	ENST00000307078.5:c.889G>A	p.Ala297Thr	p.A297T	ENST00000307078	NM_004655.3	297	Gcc/Acc																																																																														
ARAF	369	MSKCC	GRCh37	X	47430341	47430341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	30	363	0	ENST00000377045.4:c.1616C>T	p.Pro539Leu	p.P539L	ENST00000377045	NM_001654.4	539	cCc/cTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42032353	42032353	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779785984		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	52	518	0	ENST00000219905.7:c.4537C>T	p.Arg1513Cys	p.R1513C	ENST00000219905	NM_001164273.1	1513	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993624	72993624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs997674247		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	71	639	1	ENST00000268489.5:c.421G>A	p.Ala141Thr	p.A141T	ENST00000268489	NM_006885.3	141	Gcg/Acg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65321323	65321323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201595595		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	63	622	0	ENST00000342505.4:c.1517G>A	p.Arg506His	p.R506H	ENST00000342505	NM_002227.2	506	cGc/cAc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518224	103518224	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376753356		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	38	266	1	ENST00000355739.4:c.2162C>T	p.Ala721Val	p.A721V	ENST00000355739	NM_000123.3	721	gCg/gTg																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858177	27858177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1199392510		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	37	422	0	ENST00000359303.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000359303	NM_003535.2	132	Cgt/Tgt																																																																														
RARA	5914	MSKCC	GRCh37	17	38487543	38487543	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371882393		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	48	594	0	ENST00000254066.5:c.73G>A	p.Ala25Thr	p.A25T	ENST00000254066	NM_000964.3	25	Gcc/Acc																																																																														
SMO	6608	MSKCC	GRCh37	7	128851985	128851985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778688		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	136	732	2	ENST00000249373.3:c.2057C>T	p.Ala686Val	p.A686V	ENST00000249373	NM_005631.4	686	gCg/gTg																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140814	37140814	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1244024334		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	71	514	0	ENST00000373509.5:c.650G>A	p.Arg217His	p.R217H	ENST00000373509	NM_002648.3	217	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984739	72984739	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113497421		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	78	707	0	ENST00000268489.5:c.2845G>A	p.Val949Ile	p.V949I	ENST00000268489	NM_006885.3	949	Gtc/Atc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11168942	11168942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057523566		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	48	454	0	ENST00000344626.4:c.4436G>A	p.Arg1479His	p.R1479H	ENST00000344626	NM_003072.3	1479	cGt/cAt																																																																														
CD276	80381	MSKCC	GRCh37	15	73996221	73996221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	42	393	0	ENST00000318443.5:c.955G>A	p.Ala319Thr	p.A319T	ENST00000318443	NM_001024736.1	319	Gca/Aca																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11169536	11169536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	83	756	1	ENST00000344626.4:c.4606G>A	p.Ala1536Thr	p.A1536T	ENST00000344626	NM_003072.3	1536	Gca/Aca																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646279	3646279	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749277750		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	82	829	0	ENST00000294008.3:c.1799C>T	p.Pro600Leu	p.P600L	ENST00000294008	NM_032444.2	600	cCg/cTg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53243872	53243872	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	22	378	0	ENST00000375401.3:c.1121C>T	p.Ala374Val	p.A374V	ENST00000375401	NM_004187.3	374	gCg/gTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	28	497	0	ENST00000320574.5:c.1231G>A	p.Val411Met	p.V411M	ENST00000320574	NM_006231.2	411	Gtg/Atg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639525	3639525	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369846826		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	108	815	1	ENST00000294008.3:c.4114C>T	p.Arg1372Trp	p.R1372W	ENST00000294008	NM_032444.2	1372	Cgg/Tgg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31016154	31016154	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777619874		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	55	486	0	ENST00000375687.4:c.400G>A	p.Ala134Thr	p.A134T	ENST00000375687	NM_015338.5	134	Gca/Aca																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023402	31023402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	37	511	1	ENST00000375687.4:c.2887C>T	p.Pro963Ser	p.P963S	ENST00000375687	NM_015338.5	963	Cca/Tca																																																																														
ATR	545	MSKCC	GRCh37	3	142172007	142172007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762196224		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	51	493	0	ENST00000350721.4:c.7724C>T	p.Ala2575Val	p.A2575V	ENST00000350721	NM_001184.3	2575	gCg/gTg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240268	41240268	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1232364332		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	35	243	0	ENST00000379561.5:c.82C>T	p.Pro28Ser	p.P28S	ENST00000379561	NM_002015.3	28	Ccc/Tcc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672025	88672025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782231		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	32	480	0	ENST00000372037.3:c.559C>T	p.Arg187Cys	p.R187C	ENST00000372037	NM_004329.2	187	Cgt/Tgt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542552	141542552	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1382113944		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	114	563	0	ENST00000220592.5:c.2434C>T	p.Arg812Trp	p.R812W	ENST00000220592	NM_012154.3	812	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260917	16260917	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377314260		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	38	440	0	ENST00000375759.3:c.8182G>A	p.Ala2728Thr	p.A2728T	ENST00000375759	NM_015001.2	2728	Gct/Act																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262141	16262141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201304481		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	27	303	0	ENST00000375759.3:c.9406C>T	p.Arg3136Cys	p.R3136C	ENST00000375759	NM_015001.2	3136	Cgt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16265870	16265870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	51	668	0	ENST00000375759.3:c.10943C>T	p.Ala3648Val	p.A3648V	ENST00000375759	NM_015001.2	3648	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100842	27100842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	40	462	0	ENST00000324856.7:c.4124G>A	p.Gly1375Asp	p.G1375D	ENST00000324856	NM_006015.4	1375	gGc/gAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258771	115258771	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	45	354	0	ENST00000369535.4:c.11A>G	p.Tyr4Cys	p.Y4C	ENST00000369535	NM_002524.4	4	tAc/tGc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163317721	163317721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	28	260	0	ENST00000271452.3:c.1117G>T	p.Val373Leu	p.V373L	ENST00000271452	NM_145697.2	373	Gta/Tta																																																																														
IL10	3586	MSKCC	GRCh37	1	206944710	206944710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	44	442	0	ENST00000423557.1:c.216G>T	p.Glu72Asp	p.E72D	ENST00000423557	NM_000572.2	72	gaG/gaT																																																																														
WT1	7490	MSKCC	GRCh37	11	32450102	32450102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	92	699	2	ENST00000332351.3:c.710C>T	p.Ala237Val	p.A237V	ENST00000332351	NM_024426.4	237	gCg/gTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64135674	64135674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199836004		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	85	793	0	ENST00000334205.4:c.1142C>T	p.Ala381Val	p.A381V	ENST00000334205	NM_003942.2	381	gCg/gTg																																																																														
ATM	472	MSKCC	GRCh37	11	108163503	108163503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	23	479	0	ENST00000278616.4:c.4594G>A	p.Val1532Met	p.V1532M	ENST00000278616	NM_000051.3	1532	Gtg/Atg																																																																														
SDHD	6392	MSKCC	GRCh37	11	111958643	111958643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	59	411	0	ENST00000375549.3:c.115C>T	p.Pro39Ser	p.P39S	ENST00000375549	NM_003002.3	39	Cct/Tct																																																																														
CCND2	894	MSKCC	GRCh37	12	4388080	4388080	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1417189054		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	19	285	0	ENST00000261254.3:c.566C>T	p.Ala189Val	p.A189V	ENST00000261254	NM_001759.3	189	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432498	49432498	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763549369		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	83	691	0	ENST00000301067.7:c.8641C>T	p.Arg2881Trp	p.R2881W	ENST00000301067	NM_003482.3	2881	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435457	49435457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748389081		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	90	636	1	ENST00000301067.7:c.6215G>A	p.Arg2072His	p.R2072H	ENST00000301067	NM_003482.3	2072	cGc/cAc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562765	21562765	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1259441480		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	56	267	0	ENST00000382592.4:c.1154G>A	p.Gly385Asp	p.G385D	ENST00000382592	NM_014572.2	385	gGc/gAc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21565503	21565503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	102	659	0	ENST00000382592.4:c.383G>A	p.Ser128Asn	p.S128N	ENST00000382592	NM_014572.2	128	aGc/aAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910701	32910701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	41	490	0	ENST00000380152.3:c.2209G>A	p.Ala737Thr	p.A737T	ENST00000380152		737	Gca/Aca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32921027	32921027	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748816192		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	27	433	0	ENST00000380152.3:c.7001C>T	p.Pro2334Leu	p.P2334L	ENST00000380152		2334	cCc/cTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32945130	32945130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80359105		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	21	324	1	ENST00000380152.3:c.8525G>A	p.Arg2842His	p.R2842H	ENST00000380152		2842	cGc/cAc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134441	41134441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	78	552	0	ENST00000379561.5:c.1187G>A	p.Gly396Asp	p.G396D	ENST00000379561	NM_002015.3	396	gGc/gAc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41239783	41239783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	87	579	1	ENST00000379561.5:c.567G>A	p.Trp189Ter	p.W189*	ENST00000379561	NM_002015.3	189	tgG/tgA																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434964	110434964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	114	614	1	ENST00000375856.3:c.3437G>A	p.Arg1146His	p.R1146H	ENST00000375856	NM_003749.2	1146	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434970	110434970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	80	623	0	ENST00000375856.3:c.3431G>A	p.Arg1144His	p.R1144H	ENST00000375856	NM_003749.2	1144	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434992	110434992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	68	614	0	ENST00000375856.3:c.3409C>T	p.Arg1137Cys	p.R1137C	ENST00000375856	NM_003749.2	1137	Cgc/Tgc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436687	110436687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	173	819	0	ENST00000375856.3:c.1714C>T	p.Arg572Cys	p.R572C	ENST00000375856	NM_003749.2	572	Cgc/Tgc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68331743	68331743	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	26	237	0	ENST00000487270.1:c.343del	p.Thr115LeufsTer5	p.T115Lfs*5	ENST00000487270	NM_133509.3	113	ggA/gg																																																																														
MGA	23269	MSKCC	GRCh37	15	42054422	42054422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	23	405	0	ENST00000219905.7:c.7606G>T	p.Asp2536Tyr	p.D2536Y	ENST00000219905	NM_001164273.1	2536	Gat/Tat																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347978	347978	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771101523		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	67	849	1	ENST00000262320.3:c.1528G>A	p.Ala510Thr	p.A510T	ENST00000262320	NM_003502.3	510	Gcc/Acc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396718	396718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	75	616	0	ENST00000262320.3:c.308G>T	p.Arg103Met	p.R103M	ENST00000262320	NM_003502.3	103	aGg/aTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134473	2134473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1343536158		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	72	820	1	ENST00000219476.3:c.4250G>A	p.Arg1417Gln	p.R1417Q	ENST00000219476	NM_000548.3	1417	cGg/cAg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134493	2134493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1216613310		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	67	815	0	ENST00000219476.3:c.4270G>A	p.Asp1424Asn	p.D1424N	ENST00000219476	NM_000548.3	1424	Gac/Aac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786794	3786794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	45	389	0	ENST00000262367.5:c.4417G>A	p.Ala1473Thr	p.A1473T	ENST00000262367	NM_004380.2	1473	Gcc/Acc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857586	9857586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	32	421	0	ENST00000330684.3:c.3815C>T	p.Ala1272Val	p.A1272V	ENST00000330684	NM_001134407.1	1272	gCa/gTa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641779	23641779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746582620		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	15	267	0	ENST00000261584.4:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000261584	NM_024675.3	566	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72863735	72863735	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	66	524	0	ENST00000268489.5:c.3472G>T	p.Gly1158Ter	p.G1158*	ENST00000268489	NM_006885.3	1158	Gga/Tga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346600	89346600	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749269329		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	41	536	0	ENST00000301030.4:c.6350C>T	p.Pro2117Leu	p.P2117L	ENST00000301030	NM_001256183.1	2117	cCg/cTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348320	89348320	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761378635		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	67	882	1	ENST00000301030.4:c.4630G>A	p.Asp1544Asn	p.D1544N	ENST00000301030	NM_001256183.1	1544	Gac/Aac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351934	89351934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	118	953	0	ENST00000301030.4:c.1016C>T	p.Ala339Val	p.A339V	ENST00000301030	NM_001256183.1	339	gCc/gTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075175	16075175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	47	375	0	ENST00000268712.3:c.377T>C	p.Val126Ala	p.V126A	ENST00000268712	NM_006311.3	126	gTt/gCt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17127300	17127300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	78	680	0	ENST00000285071.4:c.554C>T	p.Ser185Phe	p.S185F	ENST00000285071	NM_144997.5	185	tCc/tTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868246	37868246	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	77	679	0	ENST00000269571.5:c.967A>C	p.Thr323Pro	p.T323P	ENST00000269571		323	Aca/Cca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883225	37883225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	60	701	0	ENST00000269571.5:c.3128T>C	p.Val1043Ala	p.V1043A	ENST00000269571		1043	gTc/gCc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78866583	78866583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	88	658	0	ENST00000306801.3:c.2156C>A	p.Ser719Tyr	p.S719Y	ENST00000306801	NM_020761.2	719	tCt/tAt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78899174	78899174	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199756138		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	68	414	1	ENST00000306801.3:c.2813C>T	p.Ala938Val	p.A938V	ENST00000306801	NM_020761.2	938	gCg/gTg																																																																														
YES1	7525	MSKCC	GRCh37	18	747948	747948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	30	519	0	ENST00000314574.4:c.442G>A	p.Ala148Thr	p.A148T	ENST00000314574	NM_005433.3	148	Gcg/Acg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2199922	2199922	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	73	678	2	ENST00000398665.3:c.691C>T	p.Arg231Ter	p.R231*	ENST00000398665	NM_032482.2	231	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5265039	5265039	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748364975		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	72	640	1	ENST00000357368.4:c.548G>A	p.Arg183His	p.R183H	ENST00000357368	NM_002850.3	183	cGc/cAc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955144	17955144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	65	801	0	ENST00000458235.1:c.83T>C	p.Val28Ala	p.V28A	ENST00000458235	NM_000215.3	28	gTg/gCg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18961631	18961631	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339234477		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	92	661	1	ENST00000262803.5:c.764G>A	p.Arg255His	p.R255H	ENST00000262803	NM_002911.3	255	cGc/cAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18963101	18963101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	94	624	0	ENST00000262803.5:c.968C>T	p.Ser323Phe	p.S323F	ENST00000262803	NM_002911.3	323	tCc/tTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967719	18967719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1169322559		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	72	671	0	ENST00000262803.5:c.1858G>A	p.Ala620Thr	p.A620T	ENST00000262803	NM_002911.3	620	Gcc/Acc																																																																														
AXL	558	MSKCC	GRCh37	19	41758287	41758287	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	66	648	0	ENST00000301178.4:c.1743T>A	p.Asp581Glu	p.D581E	ENST00000301178	NM_021913.4	581	gaT/gaA																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45858973	45858973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	86	602	1	ENST00000391945.4:c.1493G>A	p.Gly498Asp	p.G498D	ENST00000391945	NM_000400.3	498	gGc/gAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52723484	52723484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	70	491	0	ENST00000322088.6:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000322088	NM_014225.5	449	Gcc/Acc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39285941	39285941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	39	346	0	ENST00000402219.2:c.218G>A	p.Arg73His	p.R73H	ENST00000402219	NM_005633.3	73	cGt/cAt																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96919695	96919695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	48	536	0	ENST00000258439.3:c.568G>A	p.Ala190Thr	p.A190T	ENST00000258439	NM_001193304.2	190	Gcc/Acc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660127	227660127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	61	638	0	ENST00000305123.5:c.3328G>A	p.Ala1110Thr	p.A1110T	ENST00000305123	NM_005544.2	1110	Gcc/Acc																																																																														
SRC	6714	MSKCC	GRCh37	20	36012599	36012599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	30	437	0	ENST00000358208.4:c.43C>T	p.Arg15Cys	p.R15C	ENST00000358208		15	Cgc/Tgc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57480460	57480460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	27	260	0	ENST00000371085.3:c.455C>T	p.Ala152Val	p.A152V	ENST00000371085	NM_000516.4	152	gCt/gTt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24167595	24167595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	47	451	0	ENST00000263121.7:c.979G>A	p.Ala327Thr	p.A327T	ENST00000263121	NM_003073.3	327	Gcc/Acc																																																																														
RAC2	5880	MSKCC	GRCh37	22	37627415	37627415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1415916204		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	84	651	3	ENST00000249071.6:c.304C>T	p.Arg102Trp	p.R102W	ENST00000249071	NM_002872.4	102	Cgg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41547916	41547916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	46	468	1	ENST00000263253.7:c.2897C>T	p.Ala966Val	p.A966V	ENST00000263253	NM_001429.3	966	gCc/gTc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645681	12645681	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs397516830		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	32	289	0	ENST00000251849.4:c.788T>C	p.Val263Ala	p.V263A	ENST00000251849	NM_002880.3	263	gTc/gCc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928849	49928849	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	49	831	0	ENST00000296474.3:c.3517A>G	p.Ile1173Val	p.I1173V	ENST00000296474	NM_002447.2	1173	Atc/Gtc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259055	89259055	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	30	286	0	ENST00000336596.2:c.199A>G	p.Thr67Ala	p.T67A	ENST00000336596	NM_005233.5	67	Act/Gct																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119721051	119721051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	88	509	1	ENST00000316626.5:c.124G>A	p.Ala42Thr	p.A42T	ENST00000316626		42	Gca/Aca																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664771	138664771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	18	173	0	ENST00000330315.3:c.794C>T	p.Ala265Val	p.A265V	ENST00000330315	NM_023067.3	265	gCg/gTg																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260145	149260145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200641813		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	49	444	0	ENST00000360632.3:c.748C>T	p.Arg250Cys	p.R250C	ENST00000360632	NM_015472.4	250	Cgc/Tgc																																																																														
TP63	8626	MSKCC	GRCh37	3	189456529	189456529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752080701		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	34	447	0	ENST00000264731.3:c.290G>A	p.Arg97His	p.R97H	ENST00000264731	NM_003722.4	97	cGc/cAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55592136	55592136	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1458834829		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	38	464	1	ENST00000288135.5:c.1460G>T	p.Gly487Val	p.G487V	ENST00000288135	NM_000222.2	487	gGc/gTc																																																																														
FAM175A	0	MSKCC	GRCh37	4	84403335	84403335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	26	361	0	ENST00000321945.7:c.150G>A	p.Met50Ile	p.M50I	ENST00000321945	NM_139076.2	50	atG/atA																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143129680	143129680	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs977557624		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	20	311	0	ENST00000262992.4:c.970T>C	p.Ser324Pro	p.S324P	ENST00000262992	NM_001101669.1	324	Tcc/Ccc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510206	187510206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	43	442	0	ENST00000441802.2:c.13307C>A	p.Pro4436His	p.P4436H	ENST00000441802	NM_005245.3	4436	cCt/cAt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31508765	31508765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	90	656	0	ENST00000344624.3:c.1550G>A	p.Arg517Gln	p.R517Q	ENST00000344624		517	cGa/cAa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31508786	31508786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	99	633	0	ENST00000344624.3:c.1529G>A	p.Arg510His	p.R510H	ENST00000344624		510	cGc/cAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80171602	80171602	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576204286		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	33	527	1	ENST00000265081.6:c.3335C>T	p.Thr1112Met	p.T1112M	ENST00000265081	NM_002439.4	1112	aCg/aTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149506127	149506127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	51	602	0	ENST00000261799.4:c.1630C>A	p.Leu544Ile	p.L544I	ENST00000261799	NM_002609.3	544	Ctc/Atc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402753	20402753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	20	207	1	ENST00000346618.3:c.290G>A	p.Ser97Asn	p.S97N	ENST00000346618	NM_001949.4	97	aGc/aAc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481613	20481613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	19	263	0	ENST00000346618.3:c.682A>G	p.Ile228Val	p.I228V	ENST00000346618	NM_001949.4	228	Atc/Gtc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797235	32797235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768383489		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	103	787	1	ENST00000374899.4:c.1874C>T	p.Pro625Leu	p.P625L	ENST00000374899	NM_018833.2	625	cCg/cTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687431	117687431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	33	319	0	ENST00000368508.3:c.2620G>A	p.Glu874Lys	p.E874K	ENST00000368508	NM_002944.2	874	Gaa/Aaa																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137524761	137524761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1258321707		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	39	413	1	ENST00000367739.4:c.608C>T	p.Ala203Val	p.A203V	ENST00000367739	NM_000416.2	203	gCg/gTg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935607	13935607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751525538		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	36	381	0	ENST00000405192.2:c.1249C>T	p.Arg417Cys	p.R417C	ENST00000405192	NM_001163147.1	417	Cgt/Tgt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508611	106508611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	54	453	0	ENST00000359195.3:c.605T>C	p.Val202Ala	p.V202A	ENST00000359195	NM_002649.2	202	gTg/gCg																																																																														
MET	4233	MSKCC	GRCh37	7	116415023	116415023	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs575907920		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	36	547	0	ENST00000397752.3:c.3117C>A	p.Asp1039Glu	p.D1039E	ENST00000397752	NM_000245.2	1039	gaC/gaA																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271703	38271703	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1415925468		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	70	802	1	ENST00000425967.3:c.2246G>A	p.Arg749His	p.R749H	ENST00000425967	NM_001174067.1	749	cGc/cAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942777	68942777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	55	492	1	ENST00000288368.4:c.589G>A	p.Val197Met	p.V197M	ENST00000288368	NM_024870.2	197	Gtg/Atg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054630	5054630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs772744665		P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	27	306	2	ENST00000381652.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000381652	NM_004972.3	228	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517889	8517889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	36	290	0	ENST00000356435.5:c.1502G>A	p.Gly501Asp	p.G501D	ENST00000356435		501	gGt/gAt																																																																														
ABL1	25	MSKCC	GRCh37	9	133760508	133760508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	83	711	0	ENST00000318560.5:c.2831A>G	p.Asp944Gly	p.D944G	ENST00000318560	NM_005157.4	944	gAc/gGc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781250	135781250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	57	568	0	ENST00000298552.3:c.1715G>A	p.Cys572Tyr	p.C572Y	ENST00000298552	NM_001162426.1	572	tGc/tAc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841268	15841269	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	14	133	0	ENST00000307771.7:c.1352_1353delinsAT	p.Arg451His	p.R451H	ENST00000307771	NM_005089.3	451	cGC/cAT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932841	39932841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	28	368	0	ENST00000378444.4:c.1758C>A	p.Ser586Arg	p.S586R	ENST00000378444	NM_001123385.1	586	agC/agA																																																																														
MED12	9968	MSKCC	GRCh37	X	70349961	70349961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	88	394	0	ENST00000374080.3:c.3944C>T	p.Ala1315Val	p.A1315V	ENST00000374080		1315	gCc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	308	362	2				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	741	677	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101612	27101612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	420	839	0	ENST00000324856.7:c.4899del	p.Met1634Ter	p.M1634*	ENST00000324856	NM_006015.4	1632	Ccc/cc																																																																														
RB1	5925	MSKCC	GRCh37	13	49033967	49033967	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs1131690865		P-0040843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	167	367	0	ENST00000267163.4:c.2104C>T	p.Gln702Ter	p.Q702*	ENST00000267163	NM_000321.2	702	Caa/Taa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134547	2134547	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs45469392		P-0040843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	102	864	0	ENST00000219476.3:c.4324G>T	p.Glu1442Ter	p.E1442*	ENST00000219476	NM_000548.3	1442	Gag/Tag																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553117	106553117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	250	529	0	ENST00000369096.4:c.1082C>T	p.Ser361Phe	p.S361F	ENST00000369096	NM_001198.3	361	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0040885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	168	541	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	111	364	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0041006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	145	491	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912655		P-0041006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	343	616	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
SMO	6608	MSKCC	GRCh37	7	128843396	128843396	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61746143		P-0041006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	56	657	0	ENST00000249373.3:c.503G>A	p.Arg168His	p.R168H	ENST00000249373	NM_005631.4	168	cGc/cAc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729529	41729529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138538132		P-0041006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	45	590	0	ENST00000242208.4:c.1000G>A	p.Gly334Ser	p.G334S	ENST00000242208	NM_002192.2	334	Ggc/Agc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68301875	68301875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs965821237		P-0041006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	32	503	0	ENST00000487270.1:c.277G>T	p.Ala93Ser	p.A93S	ENST00000487270	NM_133509.3	93	Gcc/Tcc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198264797	198264797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	77	444	0	ENST00000335508.6:c.2995G>T	p.Ala999Ser	p.A999S	ENST00000335508	NM_012433.2	999	Gcc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	231	672	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678539	88678539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	22	397	0	ENST00000360948.2:c.997C>G	p.Leu333Val	p.L333V	ENST00000360948	NM_001012338.2	333	Ctg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	337	406	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	44	407	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913274		P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	32	579	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	179	908	0	ENST00000371222.2:c.109_110del	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593520	48593520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	71	260	0	ENST00000342988.3:c.1271A>T	p.Asp424Val	p.D424V	ENST00000342988	NM_005359.5	424	gAt/gTt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206650098	206650098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	102	754	0	ENST00000367120.3:c.618C>A	p.Ser206Arg	p.S206R	ENST00000367120	NM_014002.3	206	agC/agA																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575155	48575156	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	94	329	0	ENST00000342988.3:c.350dup	p.Tyr117Ter	p.Y117*	ENST00000342988	NM_005359.5	117	tat/tAat																																																																														
UPF1	5976	MSKCC	GRCh37	19	18975048	18975048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	67	329	0	ENST00000262803.5:c.2845C>T	p.Arg949Trp	p.R949W	ENST00000262803	NM_002911.3	949	Cgg/Tgg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170015128	170015128	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	39	691	0	ENST00000295797.4:c.1535del	p.Gly512AspfsTer18	p.G512Dfs*18	ENST00000295797	NM_002740.5	512	Gga/ga																																																																														
MED12	9968	MSKCC	GRCh37	X	70342101	70342101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	99	277	0	ENST00000374080.3:c.1153G>T	p.Asp385Tyr	p.D385Y	ENST00000374080		385	Gat/Tat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	88	374	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0041142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	113	518	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0041142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	107	660	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920469	134920469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	143	843	0	ENST00000398015.3:c.2284G>A	p.Asp762Asn	p.D762N	ENST00000398015	NM_004441.4	762	Gac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0041142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	108	456	3	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920404	114920404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	132	578	0	ENST00000543371.1:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000543371	NM_001198531.1	449	Gca/Aca																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729478	41729478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	148	731	0	ENST00000242208.4:c.1051G>A	p.Glu351Lys	p.E351K	ENST00000242208	NM_002192.2	351	Gag/Aag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15378262	15378262	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	124	580	0	ENST00000263377.2:c.524A>T	p.Gln175Leu	p.Q175L	ENST00000263377	NM_058243.2	175	cAg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175756	112175757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAAA			P-0041142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	80	356	0	ENST00000257430.4:c.4467_4468insAATA	p.His1490AsnfsTer25	p.H1490Nfs*25	ENST00000257430	NM_000038.5	1489	tta/tTAAAta																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562895	176562895	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	163	689	0	ENST00000439151.2:c.791A>T	p.Asn264Ile	p.N264I	ENST00000439151	NM_022455.4	264	aAc/aTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729847	41729847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	114	555	0	ENST00000242208.4:c.682C>A	p.Gln228Lys	p.Q228K	ENST00000242208	NM_002192.2	228	Cag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68939479	68939479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	93	437	0	ENST00000288368.4:c.464G>C	p.Arg155Pro	p.R155P	ENST00000288368	NM_024870.2	155	cGg/cCg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759556	133759556	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	201	1055	1	ENST00000318560.5:c.1879C>T	p.Gln627Ter	p.Q627*	ENST00000318560	NM_005157.4	627	Cag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442059	52442059	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	17	712	0	ENST00000460680.1:c.290T>G	p.Leu97Arg	p.L97R	ENST00000460680	NM_004656.3	97	cTg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	76	403	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	85	401	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	136	483	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	104	511	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	82	393	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468397	89468398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1467832547		P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	41	312	0	ENST00000336596.2:c.1938dup	p.Glu647ArgfsTer7	p.E647Rfs*7	ENST00000336596	NM_005233.5	644	tca/tcAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227834	36227834	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	195	951	1	ENST00000222270.7:c.7319A>G	p.Glu2440Gly	p.E2440G	ENST00000222270	NM_014727.1	2440	gAg/gGg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52649459	52649459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	272	546	0	ENST00000394830.3:c.1832C>A	p.Ala611Glu	p.A611E	ENST00000394830	NM_018313.4	611	gCa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0041211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	404	679	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371941	55371941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	139	430	0	ENST00000297316.4:c.631G>A	p.Ala211Thr	p.A211T	ENST00000297316	NM_022454.3	211	Gcg/Acg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521367	8521367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	342	528	1	ENST00000356435.5:c.871C>A	p.Leu291Met	p.L291M	ENST00000356435		291	Ctg/Atg																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957484	175957484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	314	454	0	ENST00000367669.3:c.1912G>A	p.Gly638Ser	p.G638S	ENST00000367669	NM_022457.5	638	Ggt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	153	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	306	823	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	122	311	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
FYN	2534	MSKCC	GRCh37	6	112041037	112041037	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761032788		P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	166	516	0	ENST00000368678.4:c.218C>T	p.Thr73Met	p.T73M	ENST00000368678		73	aCg/aTg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227954	53227954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	240	793	1	ENST00000375401.3:c.2360G>A	p.Arg787Gln	p.R787Q	ENST00000375401	NM_004187.3	787	cGg/cAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964487	93964487	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1219702649		P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	162	476	0	ENST00000369303.4:c.2410G>A	p.Ala804Thr	p.A804T	ENST00000369303	NM_004440.3	804	Gca/Aca																																																																														
MET	4233	MSKCC	GRCh37	7	116397553	116397553	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	211	307	0	ENST00000397752.3:c.1925A>T	p.Asn642Ile	p.N642I	ENST00000397752	NM_000245.2	642	aAt/aTt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473648	67473648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223736		P-0041308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	93	587	0	ENST00000327367.4:c.728G>A	p.Arg243His	p.R243H	ENST00000327367	NM_005902.3	243	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0041308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	303	660	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112173965	112173965	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	35	367	0	ENST00000257430.4:c.2674G>T	p.Glu892Ter	p.E892*	ENST00000257430	NM_000038.5	892	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0041308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			80	48	194	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874878	151874878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	43	346	0	ENST00000262189.6:c.7660C>G	p.Leu2554Val	p.L2554V	ENST00000262189	NM_170606.2	2554	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	633	679	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912660		P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	801	816	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	266	234	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	306	451	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140534545	140534545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	131	509	0	ENST00000288602.6:c.368C>G	p.Ser123Cys	p.S123C	ENST00000288602	NM_004333.4	123	tCt/tGt																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2488158	2488158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1429446056		P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	263	677	0	ENST00000355716.4:c.55G>A	p.Asp19Asn	p.D19N	ENST00000355716	NM_003820.2	19	Gac/Aac																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325861	65325861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	145	584	1	ENST00000342505.4:c.1261C>T	p.His421Tyr	p.H421Y	ENST00000342505	NM_002227.2	421	Cat/Tat																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38632043	38632043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	142	587	0	ENST00000299084.4:c.529C>T	p.Pro177Ser	p.P177S	ENST00000299084	NM_152594.2	177	Ccc/Tcc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66782077	66782077	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	80	381	0	ENST00000307102.5:c.1044G>C	p.Glu348Asp	p.E348D	ENST00000307102	NM_002755.3	348	gaG/gaC																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819756	81819756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	180	583	0	ENST00000359376.3:c.162G>C	p.Trp54Cys	p.W54C	ENST00000359376	NM_002661.3	54	tgG/tgC																																																																														
FANCA	2175	MSKCC	GRCh37	16	89858452	89858452	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	155	688	0	ENST00000389301.3:c.1108G>C	p.Glu370Gln	p.E370Q	ENST00000389301	NM_000135.2	370	Gag/Cag																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326544	62326544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	290	821	0	ENST00000508582.2:c.3541C>T	p.Pro1181Ser	p.P1181S	ENST00000508582		1181	Cct/Tct																																																																														
EP300	2033	MSKCC	GRCh37	22	41537076	41537076	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	89	353	0	ENST00000263253.7:c.1903G>C	p.Glu635Gln	p.E635Q	ENST00000263253	NM_001429.3	635	Gag/Cag																																																																														
ATR	545	MSKCC	GRCh37	3	142217549	142217549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	119	436	0	ENST00000350721.4:c.5448C>G	p.Ile1816Met	p.I1816M	ENST00000350721	NM_001184.3	1816	atC/atG																																																																														
RAD50	10111	MSKCC	GRCh37	5	131925375	131925375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	56	223	0	ENST00000265335.6:c.1298G>C	p.Arg433Thr	p.R433T	ENST00000265335		433	aGa/aCa																																																																														
FYN	2534	MSKCC	GRCh37	6	112017509	112017509	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	135	422	0	ENST00000368678.4:c.1004T>A	p.Ile335Asn	p.I335N	ENST00000368678		335	aTc/aAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069594	69069601	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTTCTG	TGTTTCTG	-			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	160	464	0	ENST00000288368.4:c.4271_4278del	p.Val1424GlyfsTer45	p.V1424Gfs*45	ENST00000288368	NM_024870.2	1423	aaTGTTTCTGtg/aatg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740776	145740776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	217	792	1	ENST00000428558.2:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000428558	NM_004260.3	442	Gag/Aag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038521	47038521	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	418	369	0	ENST00000329236.7:c.452A>T	p.Lys151Ile	p.K151I	ENST00000329236	NM_001204466.1	151	aAa/aTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	183	356	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0041386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	154	655	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443642	49443729	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCAACTCCATGGACAGGGAGCCACCCCCCTCCGGGTCTGGAGAGCCCAGGAGGGGCTCTGAGCCAGGAAAACTGGCACTGGCATCA	CCCCAACTCCATGGACAGGGAGCCACCCCCCTCCGGGTCTGGAGAGCCCAGGAGGGGCTCTGAGCCAGGAAAACTGGCACTGGCATCA	-			P-0041386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	158	664	0	ENST00000301067.7:c.3642_3729del	p.Asp1215SerfsTer86	p.D1215Sfs*86	ENST00000301067	NM_003482.3	1214	ggTGATGCCAGTGCCAGTTTTCCTGGCTCAGAGCCCCTCCTGGGCTCTCCAGACCCGGAGGGGGGTGGCTCCCTGTCCATGGAGTTGGGG/gg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56792511	56792512	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	83	474	0	ENST00000308159.5:c.242dup	p.Ser82GlufsTer7	p.S82Efs*7	ENST00000308159	NM_014669.4	81	ctg/cTtg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591952	48591952	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AT			P-0041386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	58	322	2	ENST00000342988.3:c.1115delinsAT	p.Arg372AsnfsTer6	p.R372Nfs*6	ENST00000342988	NM_005359.5	372	aGg/aATg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	95	629	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																														
MGA	23269	MSKCC	GRCh37	15	41988452	41988453	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	69	524	0	ENST00000219905.7:c.1247dup	p.Asn416LysfsTer3	p.N416Kfs*3	ENST00000219905	NM_001164273.1	415	tca/tcAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0041464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	215	732	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860287	151860287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	23	566	0	ENST00000262189.6:c.10375C>T	p.Pro3459Ser	p.P3459S	ENST00000262189	NM_170606.2	3459	Cct/Tct																																																																														
FLT1	2321	MSKCC	GRCh37	13	28886200	28886241	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGTCTCTGTGCCAGCAGTCCAGCATGATCTGATAGCTGGTG	GGGTCTCTGTGCCAGCAGTCCAGCATGATCTGATAGCTGGTG	-			P-0041464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	15	558	0	ENST00000282397.4:c.3387-6_3422del		p.X1129_splice	ENST00000282397	NM_002019.4	1129																																																																															
ATRX	546	MSKCC	GRCh37	X	76777759	76777759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	238	525	0	ENST00000373344.5:c.6957G>A	p.Met2319Ile	p.M2319I	ENST00000373344	NM_000489.3	2319	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	28	445	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0041478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	190	600	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117779	70117779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	273	638	0	ENST00000245479.2:c.247G>A	p.Gly83Ser	p.G83S	ENST00000245479	NM_000346.3	83	Ggc/Agc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121909224		P-0041507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	68	611	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	55	469	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	70	539	0	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087458	27087458	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	97	920	1	ENST00000324856.7:c.2032C>T	p.Gln678Ter	p.Q678*	ENST00000324856	NM_006015.4	678	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs876661024		P-0041507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	54	519	0	ENST00000371953.3:c.635-1G>C		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3779220	3779220	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780545388		P-0041507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	47	563	1	ENST00000262367.5:c.5828C>T	p.Pro1943Leu	p.P1943L	ENST00000262367	NM_004380.2	1943	cCg/cTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692922	89692922	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	67	762	0	ENST00000371953.3:c.406T>G	p.Cys136Gly	p.C136G	ENST00000371953	NM_000314.4	136	Tgt/Ggt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541127	187541127	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	72	569	0	ENST00000441802.2:c.6613C>T	p.Gln2205Ter	p.Q2205*	ENST00000441802	NM_005245.3	2205	Cag/Tag																																																																														
FYN	2534	MSKCC	GRCh37	6	112020851	112020851	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	58	457	0	ENST00000368678.4:c.720del	p.Phe240LeufsTer3	p.F240Lfs*3	ENST00000368678		240	ttT/tt																																																																														
ATRX	546	MSKCC	GRCh37	X	76939243	76939243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	96	897	0	ENST00000373344.5:c.1505C>T	p.Pro502Leu	p.P502L	ENST00000373344	NM_000489.3	502	cCt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	32	343	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057923	27057924	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	64	547	0	ENST00000324856.7:c.1636dup	p.Gln546ProfsTer77	p.Q546Pfs*77	ENST00000324856	NM_006015.4	544	cac/caCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577138	7577139	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTCCCAGTAGATTA			P-0041568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	49	612	0	ENST00000269305.4:c.786_799dup	p.Arg267LeufsTer83	p.R267Lfs*83	ENST00000269305	NM_001126112.2	267	cgg/cTAATCTACTGGGACgg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732911	30732911	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0041568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	28	243	0	ENST00000359013.4:c.1600-1G>A		p.X534_splice	ENST00000359013	NM_001024847.2	534																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174399	11174399	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	202	627	0	ENST00000361445.4:c.7276T>G	p.Leu2426Val	p.L2426V	ENST00000361445	NM_004958.3	2426	Ttg/Gtg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37680934	37680935	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0041570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	104	384	0	ENST00000447079.4:c.3104_3105del	p.His1035LeufsTer6	p.H1035Lfs*6	ENST00000447079	NM_015083.1	1035	CAc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	304	391	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112174379	112174379	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs587779786		P-0041600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	70	258	0	ENST00000257430.4:c.3088A>T	p.Lys1030Ter	p.K1030*	ENST00000257430	NM_000038.5	1030	Aaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057520005		P-0041600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	377	705	1	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	163	405	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0041600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	112	285	0	ENST00000257430.4:c.4391_4394del	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	574	408	2	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121909229		P-0041602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	163	469	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56377222	56377224	+	inframe_deletion	In_Frame_Del	DEL	TTT	TTT	-			P-0041602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	30	253	0	ENST00000348428.3:c.843_845del	p.Asp281_Leu282delinsGlu	p.D281_L282delinsE	ENST00000348428	NM_006785.3	281	gaTTTg/gag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168904	32168904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	249	837	0	ENST00000375023.3:c.4129C>T	p.Leu1377Phe	p.L1377F	ENST00000375023	NM_004557.3	1377	Ctc/Ttc																																																																														
ARAF	369	MSKCC	GRCh37	X	47424419	47424419	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	61	330	0	ENST00000377045.4:c.339C>G	p.Asp113Glu	p.D113E	ENST00000377045	NM_001654.4	113	gaC/gaG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	73	663	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0041612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	23	269	0	ENST00000257430.4:c.4192_4193del	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
AXL	558	MSKCC	GRCh37	19	41748898	41748898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1307122843		P-0041612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	74	557	0	ENST00000301178.4:c.1423C>T	p.Arg475Ter	p.R475*	ENST00000301178	NM_021913.4	475	Cga/Tga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71037156	71037156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	23	334	0	ENST00000318789.4:c.1135G>T	p.Ala379Ser	p.A379S	ENST00000318789	NM_032682.5	379	Gcc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	153	391	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0041616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	136	458	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs879254249		P-0041616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	189	714	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0041698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	538	670	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0041698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	366	451	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49423021	49423021	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0041698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	236	615	0	ENST00000301067.7:c.14076-2A>G		p.X4692_splice	ENST00000301067	NM_003482.3	4692																																																																															
MGA	23269	MSKCC	GRCh37	15	42000040	42000040	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	228	653	0	ENST00000219905.7:c.2303C>G	p.Thr768Ser	p.T768S	ENST00000219905	NM_001164273.1	768	aCc/aGc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971267	15971272	+	inframe_deletion	In_Frame_Del	DEL	CGATAA	CGATAA	-			P-0041698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	106	541	0	ENST00000268712.3:c.4677_4682del	p.Tyr1560_Arg1561del	p.Y1560_R1561del	ENST00000268712	NM_006311.3	1559	gtTTATCGg/gtg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467820	66467820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	54	361	0	ENST00000273854.3:c.449C>A	p.Thr150Asn	p.T150N	ENST00000273854	NM_004439.5	150	aCc/aAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268179	153268180	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTT			P-0041698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	75	323	0	ENST00000281708.4:c.628_629insAAAA	p.Gly210GlufsTer47	p.G210Efs*47	ENST00000281708	NM_033632.3	210	ggg/gAAAAgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535392	187535392	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762496253		P-0041698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	89	498	0	ENST00000441802.2:c.9182C>T	p.Thr3061Met	p.T3061M	ENST00000441802	NM_005245.3	3061	aCg/aTg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372387	55372387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	155	808	0	ENST00000297316.4:c.1077C>A	p.Asp359Glu	p.D359E	ENST00000297316	NM_022454.3	359	gaC/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	470	862	1	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182198	99182198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371798563		P-0041702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	155	651	0	ENST00000074304.5:c.2263G>A	p.Ala755Thr	p.A755T	ENST00000074304	NM_001134224.1	755	Gca/Aca																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10257034	10257034	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	101	533	0	ENST00000340748.4:c.2839A>C	p.Thr947Pro	p.T947P	ENST00000340748		947	Acg/Ccg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181545	32181545	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	193	795	0	ENST00000375023.3:c.2240G>C	p.Ser747Thr	p.S747T	ENST00000375023	NM_004557.3	747	aGc/aCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951955	178951955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	42	295	0	ENST00000263967.3:c.3010A>G	p.Met1004Val	p.M1004V	ENST00000263967	NM_006218.2	1004	Atg/Gtg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169985727	169985727	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369872734		P-0041838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	69	539	0	ENST00000295797.4:c.389G>A	p.Arg130His	p.R130H	ENST00000295797	NM_002740.5	130	cGc/cAc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163317719	163317719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	11	109	0	ENST00000271452.3:c.1115C>A	p.Thr372Lys	p.T372K	ENST00000271452	NM_145697.2	372	aCa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0041870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	196	928	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0041870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	70	663	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087924	27087925	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	138	686	0	ENST00000324856.7:c.2212dup	p.His738ProfsTer79	p.H738Pfs*79	ENST00000324856	NM_006015.4	737	-/C																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711291	114711292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0041870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	120	491	0	ENST00000543371.1:c.306_307insGG	p.Tyr103GlyfsTer6	p.Y103Gfs*6	ENST00000543371	NM_001198531.1	102	-/GG																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533923	63533924	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	122	585	0	ENST00000307078.5:c.1230dup	p.Leu411ThrfsTer51	p.L411Tfs*51	ENST00000307078	NM_004655.3	410	-/A																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356137	66356137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1290982378		P-0041870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	41	513	0	ENST00000273854.3:c.1360G>A	p.Ala454Thr	p.A454T	ENST00000273854	NM_004439.5	454	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112175468	112175469	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	90	348	0	ENST00000257430.4:c.4179dup	p.Asp1394Ter	p.D1394*	ENST00000257430	NM_000038.5	1393	ctt/cTtt																																																																														
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519912		P-0041957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	221	407	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720726	89720726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs878853944		P-0041957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	12	180	0	ENST00000371953.3:c.877G>T	p.Gly293Ter	p.G293*	ENST00000371953	NM_000314.4	293	Gga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426687	212426687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	274	597	0	ENST00000342788.4:c.2428G>C	p.Glu810Gln	p.E810Q	ENST00000342788	NM_005235.2	810	Gag/Cag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720741	89720745	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGA	CAAGA	-			P-0041957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	10	229	0	ENST00000371953.3:c.892_896del	p.Gln298AsnfsTer3	p.Q298Nfs*3	ENST00000371953	NM_000314.4	298	CAAGAa/a																																																																														
KIT	3815	MSKCC	GRCh37	4	55564513	55564513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	209	507	1	ENST00000288135.5:c.401T>C	p.Val134Ala	p.V134A	ENST00000288135	NM_000222.2	134	gTc/gCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517780	187517780	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780722653		P-0041957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	73	334	0	ENST00000441802.2:c.12914C>T	p.Ala4305Val	p.A4305V	ENST00000441802	NM_005245.3	4305	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	87	377	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1264066389		P-0041960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	37	420	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561525	9561525	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs918236421		P-0041960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	48	521	0	ENST00000353224.5:c.257T>C	p.Leu86Pro	p.L86P	ENST00000353224	NM_177990.2	86	cTa/cCa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798755	135798755	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	41	217	0	ENST00000298552.3:c.488C>A	p.Ser163Ter	p.S163*	ENST00000298552	NM_001162426.1	163	tCa/tAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719743	61719743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	46	558	0	ENST00000401558.2:c.1525C>G	p.His509Asp	p.H509D	ENST00000401558	NM_003400.3	509	Cat/Gat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	331	619	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0041973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	93	283	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	27	190	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
TET1	80312	MSKCC	GRCh37	10	70446318	70446318	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1429461725		P-0041973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	164	491	0	ENST00000373644.4:c.5258G>A	p.Arg1753His	p.R1753H	ENST00000373644	NM_030625.2	1753	cGt/cAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920444	114920469	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGTGCAGGTATATTACCACTGCGAGG	CGTGCAGGTATATTACCACTGCGAGG	-			P-0041973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	88	405	0	ENST00000543371.1:c.1386_1391+20del		p.X462_splice	ENST00000543371	NM_001198531.1	462																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0041975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	79	629	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	32	261	0	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785627	50785627	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	91	556	0	ENST00000398568.2:c.617A>G	p.Glu206Gly	p.E206G	ENST00000398568	NM_001042412.1	206	gAa/gGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577607	7577608	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CCTAGGAG			P-0041975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	29	500	0	ENST00000269305.4:c.673-7_673dup	p.Val225AlafsTer25	p.V225Afs*25	ENST00000269305	NM_001126112.2	225	gtt/gCTCCTAGGtt																																																																														
INHA	3623	MSKCC	GRCh37	2	220439518	220439518	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs540215120		P-0041975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	49	701	0	ENST00000243786.2:c.371G>A	p.Arg124His	p.R124H	ENST00000243786	NM_002191.3	124	cGc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735447	40735447	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs745862490		P-0042004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	101	705	0	ENST00000373198.4:c.3426G>T	p.Arg1142Ser	p.R1142S	ENST00000373198	NM_133170.3	1142	agG/agT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0042004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	286	746	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																														
APC	324	MSKCC	GRCh37	5	112175133	112175133	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	71	229	0	ENST00000257430.4:c.3842C>A	p.Ser1281Ter	p.S1281*	ENST00000257430	NM_000038.5	1281	tCa/tAa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515232	149515232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80162387		P-0042004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	166	813	1	ENST00000261799.4:c.250G>A	p.Val84Met	p.V84M	ENST00000261799	NM_002609.3	84	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0042008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	718	810	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866380588		P-0042018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	269	682	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097236	11097236	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs545634451		P-0042018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	227	695	0	ENST00000344626.4:c.727G>A	p.Gly243Ser	p.G243S	ENST00000344626	NM_003072.3	243	Ggc/Agc																																																																														
MITF	4286	MSKCC	GRCh37	3	70014298	70014298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142372494		P-0042018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	237	669	0	ENST00000352241.4:c.1462G>A	p.Gly488Ser	p.G488S	ENST00000352241	NM_198159.2	488	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0042018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	228	262	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913355		P-0042018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	176	420	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	312	549	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MET	4233	MSKCC	GRCh37	7	116398635	116398635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	375	589	0	ENST00000397752.3:c.2225C>T	p.Pro742Leu	p.P742L	ENST00000397752	NM_000245.2	742	cCc/cTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214636	5214636	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532712500		P-0042066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	194	933	0	ENST00000357368.4:c.4430G>A	p.Arg1477His	p.R1477H	ENST00000357368	NM_002850.3	1477	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579502	7579503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATCTGGA			P-0042066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	186	941	0	ENST00000269305.4:c.177_184dup	p.Glu62ValfsTer64	p.E62Vfs*64	ENST00000269305	NM_001126112.2	62	gaa/gTCCAGATGaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435739	56435739	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	347	676	0	ENST00000407977.2:c.1398del	p.Ser467AlafsTer35	p.S467Afs*35	ENST00000407977		466	tcC/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0042081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	657	827	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210440	36210440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	354	704	0	ENST00000222270.7:c.433C>T	p.Arg145Ter	p.R145*	ENST00000222270	NM_014727.1	145	Cga/Tga																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374942	149374942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	675	794	2	ENST00000360632.3:c.152C>A	p.Ser51Tyr	p.S51Y	ENST00000360632	NM_015472.4	51	tCt/tAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0042082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	162	569	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1217537873		P-0042082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	75	434	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100980	41100980	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868706902		P-0042082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	179	776	1	ENST00000373198.4:c.1376G>A	p.Arg459Gln	p.R459Q	ENST00000373198	NM_133170.3	459	cGg/cAg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846235	156846235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201564883		P-0042082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	33	947	0	ENST00000524377.1:c.1676G>A	p.Arg559His	p.R559H	ENST00000524377	NM_002529.3	559	cGt/cAt																																																																														
CDC42	998	MSKCC	GRCh37	1	22405066	22405066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	96	384	0	ENST00000344548.3:c.95A>G	p.Tyr32Cys	p.Y32C	ENST00000344548	NM_001039802.1	32	tAt/tGt																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046917	128046917	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	122	736	0	ENST00000285398.2:c.818A>T	p.Lys273Met	p.K273M	ENST00000285398	NM_000122.1	273	aAg/aTg																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186503805	186503805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	226	762	0	ENST00000323963.5:c.482G>A	p.Gly161Glu	p.G161E	ENST00000323963		161	gGg/gAg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751450	57751450	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	218	647	0	ENST00000274289.3:c.1541A>G	p.Tyr514Cys	p.Y514C	ENST00000274289	NM_006622.3	514	tAt/tGt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513378	106513378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	51	402	0	ENST00000359195.3:c.2282C>A	p.Ser761Tyr	p.S761Y	ENST00000359195	NM_002649.2	761	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	578	868	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962298	2962298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769577430		P-0042087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	70	937	0	ENST00000396946.4:c.2239G>A	p.Val747Ile	p.V747I	ENST00000396946	NM_032415.4	747	Gtc/Atc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226217	2226217	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749330602		P-0042087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	433	928	1	ENST00000398665.3:c.3697G>A	p.Gly1233Ser	p.G1233S	ENST00000398665	NM_032482.2	1233	Ggc/Agc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966769	25966769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	404	845	0	ENST00000435504.4:c.2437G>A	p.Ala813Thr	p.A813T	ENST00000435504		813	Gcc/Acc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636735	8636735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	110	482	0	ENST00000356435.5:c.174C>A	p.Asn58Lys	p.N58K	ENST00000356435		58	aaC/aaA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	58	482	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs28931589		P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	175	355	1	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250472	110250472	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs201986818		P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	262	617	0	ENST00000374672.4:c.203C>G	p.Ala68Gly	p.A68G	ENST00000374672	NM_004235.4	68	gCg/gGg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870865	12870866	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	43	355	0	ENST00000228872.4:c.92_93del	p.Asn31ThrfsTer93	p.N31Tfs*93	ENST00000228872	NM_004064.3	31	aAC/a																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18280043	18280044	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	51	427	1	ENST00000222254.8:c.2126_2127delinsAA	p.Thr709Lys	p.T709K	ENST00000222254	NM_005027.3	709	aCC/aAA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483949	212483949	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	199	548	0	ENST00000342788.4:c.2254A>G	p.Ile752Val	p.I752V	ENST00000342788	NM_005235.2	752	Att/Gtt																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42840414	42840415	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-	rs193920966		P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	214	595	0	ENST00000398585.3:c.1333_1334del	p.Gln445GlufsTer9	p.Q445Efs*9	ENST00000398585	NM_001135099.1	445	CAg/g																																																																														
ATR	545	MSKCC	GRCh37	3	142183962	142183962	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	141	356	0	ENST00000350721.4:c.7018del	p.Glu2340AsnfsTer5	p.E2340Nfs*5	ENST00000350721	NM_001184.3	2340	Gaa/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	22	600	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0042181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	31	751	1	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	35	498	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711875	89711875	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs587782603		P-0042181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	30	486	0	ENST00000371953.3:c.493G>A	p.Gly165Arg	p.G165R	ENST00000371953	NM_000314.4	165	Gga/Aga																																																																														
ATM	472	MSKCC	GRCh37	11	108198482	108198482	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	20	482	0	ENST00000278616.4:c.7086A>C	p.Glu2362Asp	p.E2362D	ENST00000278616	NM_000051.3	2362	gaA/gaC																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098800	178098800	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	42	827	0	ENST00000397062.3:c.245A>C	p.Glu82Ala	p.E82A	ENST00000397062	NM_006164.4	82	gAa/gCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	173	331	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	296	558	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	235	393	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	103	268	0	ENST00000257430.4:c.4127_4128del	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	333	781	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	270	606	0	ENST00000269305.4:c.102dup	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112174745	112174745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	104	246	0	ENST00000257430.4:c.3454C>T	p.Gln1152Ter	p.Q1152*	ENST00000257430	NM_000038.5	1152	Cag/Tag																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910737	29910738	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	136	655	0	ENST00000376809.5:c.280dup	p.Gln94ProfsTer5	p.Q94Pfs*5	ENST00000376809	NM_002116.7	93	gcc/gCcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	56	406	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519989		P-0042232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	225	717	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720805	89720808	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-	rs398123330		P-0042249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	50	153	0	ENST00000371953.3:c.956_959del	p.Thr319LysfsTer24	p.T319Kfs*24	ENST00000371953	NM_000314.4	319	aCTTTa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs587782197		P-0042249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	163	551	0	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592118	67592122	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTT	CTTTT	-			P-0042249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	33	152	0	ENST00000274335.5:c.1937_1941del	p.Phe646CysfsTer6	p.F646Cfs*6	ENST00000274335		645	aCTTTT/a																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970955	21970955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	166	353	1	ENST00000304494.5:c.403G>A	p.Gly135Arg	p.G135R	ENST00000304494	NM_000077.4	135	Ggg/Agg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970955	21970955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	166	353	1	ENST00000304494.5:c.403G>A	p.Gly135Arg	p.G135R	ENST00000304494	NM_000077.4	135	Ggg/Agg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	26	347	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ATM	472	MSKCC	GRCh37	11	108099919	108099919	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs754033733		P-0042259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	10	124	0	ENST00000278616.4:c.200A>G	p.Tyr67Cys	p.Y67C	ENST00000278616	NM_000051.3	67	tAt/tGt																																																																														
POLE	5426	MSKCC	GRCh37	12	133235894	133235894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	22	459	0	ENST00000320574.5:c.3262C>T	p.Pro1088Ser	p.P1088S	ENST00000320574	NM_006231.2	1088	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577147	7577155	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AGATTACCA	AGATTACCA	-			P-0042259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	46	458	0	ENST00000269305.4:c.783_791del	p.Ser261_Leu264delinsArg	p.S261_L264delinsR	ENST00000269305	NM_001126112.2	261	agTGGTAATCTa/aga																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46603779	46603779	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	38	532	0	ENST00000263734.3:c.1136A>C	p.Lys379Thr	p.K379T	ENST00000263734	NM_001430.4	379	aAg/aCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	62	341	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	41	564	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	149	688	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519816		P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	96	699	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023151	27023179	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	-			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	32	31	0	ENST00000324856.7:c.267_295del	p.Ser90ProfsTer11	p.S90Pfs*11	ENST00000324856	NM_006015.4	86	gGCGGAGCCGGCAGCGGCGGCGGGCCCGGC/g																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871059	12871060	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGGTGCCTGC			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	35	329	0	ENST00000228872.4:c.295_305dup	p.Gln104ArgfsTer19	p.Q104Rfs*19	ENST00000228872	NM_004064.3	96	aaa/aAAGGTGCCTGCaa																																																																														
ATM	472	MSKCC	GRCh37	11	108203543	108203543	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	26	256	0	ENST00000278616.4:c.7843C>T	p.Gln2615Ter	p.Q2615*	ENST00000278616	NM_000051.3	2615	Cag/Tag																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643348	38643348	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs946203764		P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	28	419	0	ENST00000299084.4:c.818G>C	p.Arg273Thr	p.R273T	ENST00000299084	NM_152594.2	273	aGa/aCa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164489	47164489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	24	274	0	ENST00000409792.3:c.1637C>T	p.Ser546Phe	p.S546F	ENST00000409792	NM_014159.6	546	tCt/tTt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38064133	38064133	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	45	461	0	ENST00000250448.2:c.45G>A	p.Trp15Ter	p.W15*	ENST00000250448	NM_004496.3	15	tgG/tgA																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662301	227662301	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1289819083		P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	138	729	0	ENST00000305123.5:c.1154C>T	p.Ser385Leu	p.S385L	ENST00000305123	NM_005544.2	385	tCg/tTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710987	114710987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	40	440	1	ENST00000543371.1:c.211C>T	p.Arg71Cys	p.R71C	ENST00000543371	NM_001198531.1	71	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420049	49420049	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1159189200		P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	120	618	1	ENST00000301067.7:c.15700G>T	p.Glu5234Ter	p.E5234*	ENST00000301067	NM_003482.3	5234	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101288	27101288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	70	695	0	ENST00000324856.7:c.4570C>T	p.His1524Tyr	p.H1524Y	ENST00000324856	NM_006015.4	1524	Cat/Tat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344722	118344722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	48	333	0	ENST00000534358.1:c.2848C>T	p.Leu950Phe	p.L950F	ENST00000534358	NM_005933.3	950	Ctt/Ttt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118363883	118363883	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	103	447	0	ENST00000534358.1:c.5116C>T	p.Gln1706Ter	p.Q1706*	ENST00000534358	NM_005933.3	1706	Cag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133248893	133248893	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	51	610	0	ENST00000320574.5:c.1702G>C	p.Asp568His	p.D568H	ENST00000320574	NM_006231.2	568	Gac/Cac																																																																														
RB1	5925	MSKCC	GRCh37	13	48954333	48954333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	17	264	0	ENST00000267163.4:c.1454C>T	p.Ser485Phe	p.S485F	ENST00000267163	NM_000321.2	485	tCt/tTt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81563040	81563040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	37	346	0	ENST00000298171.2:c.603G>C	p.Lys201Asn	p.K201N	ENST00000298171	NM_000369.2	201	aaG/aaC																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004694	16004694	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	43	563	0	ENST00000268712.3:c.2560G>C	p.Glu854Gln	p.E854Q	ENST00000268712	NM_006311.3	854	Gaa/Caa																																																																														
RRAS	6237	MSKCC	GRCh37	19	50143304	50143304	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	36	130	0	ENST00000246792.3:c.52G>T	p.Gly18Ter	p.G18*	ENST00000246792	NM_006270.3	18	Gga/Tga																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505389	25505389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	67	606	0	ENST00000264709.3:c.369G>C	p.Glu123Asp	p.E123D	ENST00000264709	NM_175629.2	123	gaG/gaC																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273192	198273192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	86	594	0	ENST00000335508.6:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000335508	NM_012433.2	340	Gaa/Aaa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662307	227662307	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1446895458		P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	136	726	0	ENST00000305123.5:c.1148C>T	p.Ser383Leu	p.S383L	ENST00000305123	NM_005544.2	383	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735428	40735428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	49	548	0	ENST00000373198.4:c.3445G>C	p.Glu1149Gln	p.E1149Q	ENST00000373198	NM_133170.3	1149	Gag/Cag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161851	47161851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	50	382	0	ENST00000409792.3:c.4275G>C	p.Lys1425Asn	p.K1425N	ENST00000409792	NM_014159.6	1425	aaG/aaC																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027062	71027062	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1158652441		P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	129	459	0	ENST00000318789.4:c.1265C>T	p.Ser422Phe	p.S422F	ENST00000318789	NM_032682.5	422	tCt/tTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259461	89259461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	87	446	0	ENST00000336596.2:c.605G>T	p.Cys202Phe	p.C202F	ENST00000336596	NM_005233.5	202	tGc/tTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390923	89390923	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	45	297	0	ENST00000336596.2:c.989G>C	p.Arg330Thr	p.R330T	ENST00000336596	NM_005233.5	330	aGa/aCa																																																																														
KDR	3791	MSKCC	GRCh37	4	55946251	55946251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	85	358	1	ENST00000263923.4:c.3928C>T	p.His1310Tyr	p.H1310Y	ENST00000263923	NM_002253.2	1310	Cac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112111390	112111390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	25	257	0	ENST00000257430.4:c.487C>G	p.Gln163Glu	p.Q163E	ENST00000257430	NM_000038.5	163	Cag/Gag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176662824	176662824	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	20	326	0	ENST00000439151.2:c.3799G>T	p.Val1267Leu	p.V1267L	ENST00000439151	NM_022455.4	1267	Gtg/Ttg																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778088	27778088	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	41	511	0	ENST00000369163.2:c.237C>G	p.Phe79Leu	p.F79L	ENST00000369163	NM_003536.2	79	ttC/ttG																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670961	30670961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	63	757	0	ENST00000376406.3:c.5785G>A	p.Asp1929Asn	p.D1929N	ENST00000376406	NM_014641.2	1929	Gat/Aat																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64288432	64288432	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	47	234	0	ENST00000370651.3:c.196C>T	p.Leu66Phe	p.L66F	ENST00000370651	NM_003463.4	66	Ctt/Ttt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845886	151845886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	49	593	0	ENST00000262189.6:c.13126G>A	p.Glu4376Lys	p.E4376K	ENST00000262189	NM_170606.2	4376	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929004	44929004	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	84	264	0	ENST00000377967.4:c.2104C>G	p.His702Asp	p.H702D	ENST00000377967	NM_021140.2	702	Cac/Gac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	43	313	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519991		P-0042280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	85	714	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17947985	17947985	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587778414		P-0042280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	88	844	3	ENST00000458235.1:c.1739C>T	p.Ser580Leu	p.S580L	ENST00000458235	NM_000215.3	580	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106554	27106554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	106	715	0	ENST00000324856.7:c.6165del	p.Met2055IlefsTer80	p.M2055Ifs*80	ENST00000324856	NM_006015.4	2055	atG/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	299	265	0				ENST00000310581	NM_198253.2																																																																																
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0042342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	105	189	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913364		P-0042342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	288	287	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678470	88678470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1307510401		P-0042342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	460	442	0	ENST00000360948.2:c.1066G>A	p.Gly356Arg	p.G356R	ENST00000360948	NM_001012338.2	356	Gga/Aga																																																																														
RAD52	5893	MSKCC	GRCh37	12	1042140	1042140	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0042342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	276	337	0	ENST00000358495.3:c.84+1G>A		p.X28_splice	ENST00000358495	NM_134424.2	28																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628671	21628671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	155	335	1	ENST00000421138.2:c.1037C>T	p.Ala346Val	p.A346V	ENST00000421138		346	gCc/gTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572540	95572540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	116	199	0	ENST00000343455.3:c.2825C>T	p.Pro942Leu	p.P942L	ENST00000343455	NM_177438.2	942	cCt/cTt																																																																														
AKT1	207	MSKCC	GRCh37	14	105243078	105243078	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775892860		P-0042342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	339	478	1	ENST00000349310.3:c.205C>T	p.Arg69Trp	p.R69W	ENST00000349310	NM_001014432.1	69	Cgg/Tgg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729152	66729153	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0042342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	499	399	0	ENST00000307102.5:c.360_361delinsAA	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	120	gaGTgc/gaAAgc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082487	16082488	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0042342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	245	416	2	ENST00000281043.3:c.301_302delinsAA	p.Gly101Lys	p.G101K	ENST00000281043	NM_005378.4	101	GGa/AAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663580	117663580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1417876029		P-0042342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	399	344	0	ENST00000368508.3:c.4652G>A	p.Gly1551Glu	p.G1551E	ENST00000368508	NM_002944.2	1551	gGa/gAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962797	2962797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	254	447	0	ENST00000396946.4:c.2111C>T	p.Ala704Val	p.A704V	ENST00000396946	NM_032415.4	704	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0042528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	160	701	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	56	255	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs373221034		P-0042528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	108	588	2	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144011	11144011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755541709		P-0042528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	110	650	1	ENST00000344626.4:c.3592G>A	p.Glu1198Lys	p.E1198K	ENST00000344626	NM_003072.3	1198	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0042598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	192	622	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0042598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	62	297	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539870	187539870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	65	355	0	ENST00000441802.2:c.7870G>A	p.Asp2624Asn	p.D2624N	ENST00000441802	NM_005245.3	2624	Gat/Aat																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372527	55372527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	230	782	0	ENST00000297316.4:c.1217T>C	p.Val406Ala	p.V406A	ENST00000297316	NM_022454.3	406	gTa/gCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	43	444	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0042609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	247	698	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	140	467	0	ENST00000342988.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000342988	NM_005359.5	352	gGa/gTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591096	67591392	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAACAGCATTAAACCAGACCTTATCCAGCTGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATGAAAACACTGAAGAGTAAGTAGTTACTAAAGATGGTGATAGCAGAAGATTTTTCTCATTTTAGGAAAATGCATGACTTGCTTTGTTTTTA	GAACAGCATTAAACCAGACCTTATCCAGCTGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATGAAAACACTGAAGAGTAAGTAGTTACTAAAGATGGTGATAGCAGAAGATTTTTCTCATTTTAGGAAAATGCATGACTTGCTTTGTTTTTA	-			P-0042609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	14	297	0	ENST00000274335.5:c.1694_1814+81del		p.X565_splice	ENST00000274335		565																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0042610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	137	829	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868145	56868145	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	96	661	1	ENST00000308159.5:c.1643del	p.Leu548ProfsTer23	p.L548Pfs*23	ENST00000308159	NM_014669.4	548	cTc/cc																																																																														
APC	324	MSKCC	GRCh37	5	112175224	112175225	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	108	252	0	ENST00000257430.4:c.3935dup	p.Thr1313AsnfsTer2	p.T1313Nfs*2	ENST00000257430	NM_000038.5	1311	-/G																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	88	525	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	318	863	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	47	301	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	121	570	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	93	345	0	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164782	36164782	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752616540		P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	372	915	3	ENST00000300305.3:c.1093G>A	p.Gly365Ser	p.G365S	ENST00000300305		365	Ggc/Agc																																																																														
RET	5979	MSKCC	GRCh37	10	43604577	43604577	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776223166		P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	162	914	1	ENST00000355710.3:c.1162G>A	p.Val388Ile	p.V388I	ENST00000355710	NM_020975.4	388	Gtc/Atc																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805684	46805684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	138	979	1	ENST00000290295.7:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000290295	NM_006361.5	91	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0042696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	42	184	0				ENST00000310581	NM_198253.2																																																																																
ELF3	1999	MSKCC	GRCh37	1	201983071	201983072	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	87	786	0	ENST00000359651.3:c.921dup	p.Ser308LeufsTer163	p.S308Lfs*163	ENST00000359651		307	cgc/cgCc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918296	44918296	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs756644556		P-0042696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	49	265	0	ENST00000377967.4:c.921C>A	p.Tyr307Ter	p.Y307*	ENST00000377967	NM_021140.2	307	taC/taA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101486	27101486	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs370907880		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	85	902	0	ENST00000324856.7:c.4768C>T	p.Pro1590Ser	p.P1590S	ENST00000324856	NM_006015.4	1590	Ccc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	85	501	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133256105	133256105	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375213599		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	80	626	1	ENST00000320574.5:c.556G>A	p.Ala186Thr	p.A186T	ENST00000320574	NM_006231.2	186	Gcg/Acg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549082	21549082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	50	496	0	ENST00000382592.4:c.3194A>G	p.Gln1065Arg	p.Q1065R	ENST00000382592	NM_014572.2	1065	cAg/cGg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061021	38061021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	17	117	0	ENST00000250448.2:c.968C>G	p.Ala323Gly	p.A323G	ENST00000250448	NM_004496.3	323	gCg/gGg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500663	99500663	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs773129173		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	47	475	0	ENST00000268035.6:c.4096A>C	p.Thr1366Pro	p.T1366P	ENST00000268035	NM_000875.3	1366	Acc/Ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577135	7577143	+	inframe_deletion	In_Frame_Del	DEL	TTCCGTCCC	TTCCGTCCC	-			P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	129	782	2	ENST00000269305.4:c.795_803del	p.Gly266_Asn268del	p.G266_N268del	ENST00000269305	NM_001126112.2	265	ctGGGACGGAAc/ctc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276608	15276608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	115	838	0	ENST00000263388.2:c.5657G>T	p.Gly1886Val	p.G1886V	ENST00000263388	NM_000435.2	1886	gGt/gTt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211355	36211357	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs201152143		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	97	900	7	ENST00000222270.7:c.1117_1119del	p.Glu373del	p.E373del	ENST00000222270	NM_014727.1	369	aAAGaa/aaa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867048	45867048	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1477313928		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	34	519	0	ENST00000391945.4:c.1071C>G	p.Phe357Leu	p.F357L	ENST00000391945	NM_000400.3	357	ttC/ttG																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279807	46279809	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-	rs553605982		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	19	467	0	ENST00000371998.3:c.3739_3741del	p.Met1247del	p.M1247del	ENST00000371998		1245	ATG/-																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430243	181430243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	54	293	0	ENST00000325404.1:c.95G>C	p.Gly32Ala	p.G32A	ENST00000325404	NM_003106.3	32	gGc/gCc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149439403	149439403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	140	717	0	ENST00000286301.3:c.1992G>C	p.Glu664Asp	p.E664D	ENST00000286301	NM_005211.3	664	gaG/gaC																																																																														
MET	4233	MSKCC	GRCh37	7	116380017	116380017	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752842662		P-0042710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	107	569	0	ENST00000397752.3:c.1406G>A	p.Arg469Gln	p.R469Q	ENST00000397752	NM_000245.2	469	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			136	212	485	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023707	27023708	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	67	397	0	ENST00000324856.7:c.817dup	p.Ala273GlyfsTer127	p.A273Gfs*127	ENST00000324856	NM_006015.4	271	-/G																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097695	27097698	+	frameshift_variant	Frame_Shift_Del	DEL	AGTA	AGTA	-			P-0042764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	215	654	0	ENST00000324856.7:c.3284_3287del	p.Gln1095LeufsTer65	p.Q1095Lfs*65	ENST00000324856	NM_006015.4	1095	cAGTAt/ct																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026114	71026114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1240117000		P-0042764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	185	457	1	ENST00000318789.4:c.1508G>A	p.Arg503Gln	p.R503Q	ENST00000318789	NM_032682.5	503	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0042814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	312	820	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	545	473	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593488	48593488	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs730881954		P-0042814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	158	367	0	ENST00000342988.3:c.1239C>A	p.Tyr413Ter	p.Y413*	ENST00000342988	NM_005359.5	413	taC/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042882-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	97	421	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0042882-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	153	932	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575194	48575194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042882-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	46	325	0	ENST00000342988.3:c.388C>T	p.Pro130Ser	p.P130S	ENST00000342988	NM_005359.5	130	Cca/Tca																																																																														
JUN	3725	MSKCC	GRCh37	1	59247764	59247764	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042882-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	82	650	0	ENST00000371222.2:c.979C>T	p.Gln327Ter	p.Q327*	ENST00000371222	NM_002228.3	327	Cag/Tag																																																																														
ATR	545	MSKCC	GRCh37	3	142266577	142266577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042882-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	58	308	0	ENST00000350721.4:c.3347C>T	p.Pro1116Leu	p.P1116L	ENST00000350721	NM_001184.3	1116	cCt/cTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151960150	151960150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042882-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			147	29	445	0	ENST00000262189.6:c.1250G>T	p.Cys417Phe	p.C417F	ENST00000262189	NM_170606.2	417	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	472	655	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	54	157	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	88	311	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25468174	25468174	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs149738328		P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	222	734	0	ENST00000264709.3:c.1502A>G	p.Asn501Ser	p.N501S	ENST00000264709	NM_175629.2	501	aAt/aGt																																																																														
APC	324	MSKCC	GRCh37	5	112175399	112175399	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	73	232	0	ENST00000257430.4:c.4108A>T	p.Lys1370Ter	p.K1370*	ENST00000257430	NM_000038.5	1370	Aaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133226424	133226424	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	166	567	0	ENST00000320574.5:c.3634A>T	p.Met1212Leu	p.M1212L	ENST00000320574	NM_006231.2	1212	Atg/Ttg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604767	48604767	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	127	350	0	ENST00000342988.3:c.1589A>C	p.His530Pro	p.H530P	ENST00000342988	NM_005359.5	530	cAc/cCc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245512	153245512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	96	323	0	ENST00000281708.4:c.1679A>G	p.Asp560Gly	p.D560G	ENST00000281708	NM_033632.3	560	gAt/gGt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473635	67473635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906853		P-0042932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	187	577	1	ENST00000327367.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000327367	NM_005902.3	239	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057705	27057705	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	232	768	0	ENST00000324856.7:c.1413C>A	p.Tyr471Ter	p.Y471*	ENST00000324856	NM_006015.4	471	taC/taA																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652377	206652377	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782242787		P-0042932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	49	695	1	ENST00000367120.3:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000367120	NM_014002.3	362	Gag/Aag																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482854	67482860	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CGCTGTT	CGCTGTT	TAAGAC			P-0042932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	115	494	2	ENST00000327367.4:c.1258_1264delinsTAAGAC	p.Arg420Ter	p.R420*	ENST00000327367	NM_005902.3	420	CGCTGTTcc/TAAGACcc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696404	47696404	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	178	499	0	ENST00000347630.2:c.419A>T	p.Asp140Val	p.D140V	ENST00000347630	NM_001007230.1	140	gAt/gTt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	37	696	0	ENST00000361445.4:c.7280T>G	p.Leu2427Arg	p.L2427R	ENST00000361445	NM_004958.3	2427	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T	rs886039483		P-0042971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	112	836	0	ENST00000269305.4:c.376T>A	p.Tyr126Asn	p.Y126N	ENST00000269305	NM_001126112.2	126	Tac/Aac																																																																														
MED12	9968	MSKCC	GRCh37	X	70348536	70348536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	13	347	1	ENST00000374080.3:c.3443G>T	p.Arg1148Leu	p.R1148L	ENST00000374080		1148	cGc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121912666		P-0042974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	124	711	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222187	53222187	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	57	577	0	ENST00000375401.3:c.4645C>G	p.Leu1549Val	p.L1549V	ENST00000375401	NM_004187.3	1549	Ctg/Gtg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100303	27100303	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	90	606	0	ENST00000324856.7:c.4015T>G	p.Tyr1339Asp	p.Y1339D	ENST00000324856	NM_006015.4	1339	Tat/Gat																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112891132	112891132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	57	690	0	ENST00000351677.2:c.466G>T	p.Asp156Tyr	p.D156Y	ENST00000351677	NM_002834.3	156	Gac/Tac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672797	30672808	+	inframe_deletion	In_Frame_Del	DEL	GTGGGCTCAGGG	GTGGGCTCAGGG	-			P-0042974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	111	747	0	ENST00000376406.3:c.4152_4163del	p.Pro1385_Thr1388del	p.P1385_T1388del	ENST00000376406	NM_014641.2	1384	acCCCTGAGCCCACa/aca																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742000	145742000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	64	657	0	ENST00000428558.2:c.503G>T	p.Arg168Met	p.R168M	ENST00000428558	NM_004260.3	168	aGg/aTg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222169	53222169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	46	534	0	ENST00000375401.3:c.4663C>G	p.Pro1555Ala	p.P1555A	ENST00000375401	NM_004187.3	1555	Ccg/Gcg																																																																														
NF2	4771	MSKCC	GRCh37	22	30000100	30000100	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0042986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	258	709	0	ENST00000338641.4:c.113A>T	p.Glu38Val	p.E38V	ENST00000338641	NM_000268.3	38	gAg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100171	27100171	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778051		P-0042986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	341	597	0	ENST00000324856.7:c.3967C>T	p.Arg1323Cys	p.R1323C	ENST00000324856	NM_006015.4	1323	Cgc/Tgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950898	32950900	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0042986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	317	627	0	ENST00000380152.3:c.8727_8729del	p.Lys2909del	p.K2909del	ENST00000380152		2908	gtGAAg/gtg																																																																														
INSR	3643	MSKCC	GRCh37	19	7184388	7184388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs765888394		P-0043016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	118	644	0	ENST00000302850.5:c.913G>A	p.Val305Ile	p.V305I	ENST00000302850	NM_000208.2	305	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0043016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	141	574	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NF1	4763	MSKCC	GRCh37	17	29585516	29585516	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0043016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	15	123	0	ENST00000358273.4:c.4328C>G	p.Ser1443Ter	p.S1443*	ENST00000358273	NM_001042492.2	1443	tCa/tGa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716220	243716220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	67	505	0	ENST00000263826.5:c.974G>T	p.Arg325Leu	p.R325L	ENST00000263826	NM_005465.4	325	cGa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0043036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	128	435	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	169	385	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023497	27023498	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0043036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	169	649	0	ENST00000324856.7:c.606_607del	p.His203ArgfsTer196	p.H203Rfs*196	ENST00000324856	NM_006015.4	201	aaCTct/aact																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098959	178098959	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	92	320	0	ENST00000397062.3:c.86A>C	p.Asp29Ala	p.D29A	ENST00000397062	NM_006164.4	29	gAt/gCt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589219	67589219	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	40	321	0	ENST00000274335.5:c.1207G>T	p.Glu403Ter	p.E403*	ENST00000274335		403	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0043060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	93	973	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281713	49281713	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	38	1008	0	ENST00000282018.3:c.760A>G	p.Ile254Val	p.I254V	ENST00000282018	NM_020377.2	254	Atc/Gtc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921998	39921998	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0043060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	96	354	0	ENST00000378444.4:c.4173+1G>T		p.X1391_splice	ENST00000378444	NM_001123385.1	1391																																																																															
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863224451		P-0043063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	456	739	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56401549	56401549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	42	343	0	ENST00000348428.3:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000348428	NM_006785.3	471	Gat/Aat																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0043063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	470	733	0	ENST00000337652.1:c.249_252del	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																														
AR	367	MSKCC	GRCh37	X	66766357	66766401	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-			P-0043063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	88	117	0	ENST00000374690.3:c.1376_1420del	p.Gly459_Gly473del	p.G459_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	172	451	3	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	103	522	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	103	522	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913385		P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	103	522	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	281	746	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
CBL	867	MSKCC	GRCh37	11	119077232	119077233	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC	rs373212940		P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	130	733	1	ENST00000264033.4:c.125_127dup	p.His42dup	p.H42dup	ENST00000264033	NM_005188.3	42	-/CAC																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517445	157517445	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	150	474	0	ENST00000346085.5:c.4009C>T	p.Arg1337Ter	p.R1337*	ENST00000346085	NM_020732.3	1337	Cga/Tga																																																																														
BCL6	604	MSKCC	GRCh37	3	187440290	187440290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200887028		P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	203	543	0	ENST00000232014.4:c.2077G>A	p.Val693Met	p.V693M	ENST00000232014	NM_001130845.1	693	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112175215	112175216	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAAAGATTG			P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	36	244	0	ENST00000257430.4:c.3928_3937dup	p.Thr1313LysfsTer5	p.T1313Kfs*5	ENST00000257430	NM_000038.5	1308	-/GAAAAGATTG																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372055	55372055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	205	480	0	ENST00000297316.4:c.745G>A	p.Gly249Ser	p.G249S	ENST00000297316	NM_022454.3	249	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	27	463	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	37	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	122	484	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15297996	15297996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142787620		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	166	820	2	ENST00000263388.2:c.1760G>A	p.Arg587His	p.R587H	ENST00000263388	NM_000435.2	587	cGc/cAc																																																																														
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	19	186	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	38	343	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15950396	15950396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201721277		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	58	496	0	ENST00000268712.3:c.6548G>A	p.Arg2183His	p.R2183H	ENST00000268712	NM_006311.3	2183	cGc/cAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589147	67589147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	22	267	0	ENST00000274335.5:c.1135A>G	p.Lys379Glu	p.K379E	ENST00000274335		379	Aaa/Gaa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	93	425	11	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	55	552	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549884	187549884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756351356		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	57	317	1	ENST00000441802.2:c.4357C>T	p.Arg1453Cys	p.R1453C	ENST00000441802	NM_005245.3	1453	Cgt/Tgt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17117087	17117087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764899882		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	143	582	2	ENST00000285071.4:c.1622C>T	p.Ala541Val	p.A541V	ENST00000285071	NM_144997.5	541	gCg/gTg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	81	555	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912103	50912103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1237089094		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	151	809	0	ENST00000440232.2:c.1837G>A	p.Ala613Thr	p.A613T	ENST00000440232	NM_002691.3	613	Gcc/Acc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136270	2136270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1371745883		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	137	721	0	ENST00000219476.3:c.4739G>A	p.Arg1580Gln	p.R1580Q	ENST00000219476	NM_000548.3	1580	cGg/cAg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	91	440	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
TERT	7015	MSKCC	GRCh37	5	1293833	1293833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	124	920	4	ENST00000310581.5:c.1168C>T	p.Arg390Trp	p.R390W	ENST00000310581	NM_198253.2	390	Cgg/Tgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210837	2210837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753115153		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	89	466	0	ENST00000398665.3:c.1334C>T	p.Ala445Val	p.A445V	ENST00000398665	NM_032482.2	445	gCg/gTg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12044500	12044500	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367662793		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	36	331	0	ENST00000353533.5:c.1123G>A	p.Val375Ile	p.V375I	ENST00000353533	NM_003010.3	375	Gtt/Att																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	50	166	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261878	16261878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs763414538		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	102	484	0	ENST00000375759.3:c.9143C>T	p.Thr3048Met	p.T3048M	ENST00000375759	NM_015001.2	3048	aCg/aTg																																																																														
MITF	4286	MSKCC	GRCh37	3	70014176	70014176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	129	598	0	ENST00000352241.4:c.1340G>A	p.Gly447Asp	p.G447D	ENST00000352241	NM_198159.2	447	gGc/gAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210692	5210692	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	121	634	0	ENST00000357368.4:c.5359C>T	p.Arg1787Trp	p.R1787W	ENST00000357368	NM_002850.3	1787	Cgg/Tgg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206818	36206818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	110	503	0	ENST00000300305.3:c.694C>T	p.Arg232Trp	p.R232W	ENST00000300305		232	Cgg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs753855314		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	107	741	4	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610059	81610059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121908872		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	47	379	0	ENST00000298171.2:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000298171	NM_000369.2	553	Gcc/Acc																																																																														
MST1	4485	MSKCC	GRCh37	3	49725324	49725324	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs748664213		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	28	523	1	ENST00000449682.2:c.101G>A	p.Arg34His	p.R34H	ENST00000449682	NM_020998.3	34	cGc/cAc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731065	162731065	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747307320		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	74	433	0	ENST00000367921.3:c.920G>A	p.Arg307His	p.R307H	ENST00000367921	NM_006182.2	307	cGc/cAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354375	354375	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs910854855		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	190	754	0	ENST00000262320.3:c.1183C>T	p.Arg395Cys	p.R395C	ENST00000262320	NM_003502.3	395	Cgc/Tgc																																																																														
B2M	567	MSKCC	GRCh37	15	45003788	45003788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	129	461	0	ENST00000558401.1:c.44T>C	p.Leu15Pro	p.L15P	ENST00000558401	NM_004048.2	15	cTt/cCt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031919	10031919	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs901717931		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	80	699	0	ENST00000330684.3:c.904G>A	p.Ala302Thr	p.A302T	ENST00000330684	NM_001134407.1	302	Gct/Act																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	100	638	5	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
FGF3	2248	MSKCC	GRCh37	11	69631102	69631102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121917704		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	93	655	0	ENST00000334134.2:c.310C>T	p.Arg104Ter	p.R104*	ENST00000334134	NM_005247.2	104	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435099	110435099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	172	719	2	ENST00000375856.3:c.3302C>T	p.Pro1101Leu	p.P1101L	ENST00000375856	NM_003749.2	1101	cCg/cTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993075	72993075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	89	820	0	ENST00000268489.5:c.970G>A	p.Ala324Thr	p.A324T	ENST00000268489	NM_006885.3	324	Gct/Act																																																																														
WT1	7490	MSKCC	GRCh37	11	32417875	32417875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	94	472	0	ENST00000332351.3:c.1177T>C	p.Cys393Arg	p.C393R	ENST00000332351	NM_024426.4	393	Tgt/Cgt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478220	99478220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	59	332	1	ENST00000268035.6:c.3124C>T	p.Arg1042Cys	p.R1042C	ENST00000268035	NM_000875.3	1042	Cgt/Tgt																																																																														
RAD51	5888	MSKCC	GRCh37	15	40993283	40993283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1428987216		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	28	377	0	ENST00000267868.3:c.109G>A	p.Asp37Asn	p.D37N	ENST00000267868	NM_002875.4	37	Gat/Aat																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39570468	39570468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs267605182		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	20	205	0	ENST00000262039.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000262039	NM_002647.2	222	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1294382	1294382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs943176303		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	115	575	0	ENST00000310581.5:c.619G>A	p.Val207Ile	p.V207I	ENST00000310581	NM_198253.2	207	Gtc/Atc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240069	41240069	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1482440466		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	10	25	0	ENST00000379561.5:c.281T>C	p.Val94Ala	p.V94A	ENST00000379561	NM_002015.3	94	gTg/gCg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73342975	73342975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757306363		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	35	301	0	ENST00000377767.4:c.1831C>T	p.Arg611Cys	p.R611C	ENST00000377767	NM_014953.3	611	Cgt/Tgt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129249	152129249	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs771540162		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	123	695	2	ENST00000206249.3:c.202G>A	p.Ala68Thr	p.A68T	ENST00000206249	NM_000125.3	68	Gcc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs267607237		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	145	646	0	ENST00000301067.7:c.15536G>A	p.Arg5179His	p.R5179H	ENST00000301067	NM_003482.3	5179	cGt/cAt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226490	2226490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780810017		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	195	844	0	ENST00000398665.3:c.3970G>A	p.Ala1324Thr	p.A1324T	ENST00000398665	NM_032482.2	1324	Gcg/Acg																																																																														
MITF	4286	MSKCC	GRCh37	3	69928454	69928454	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs559222331		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	142	615	0	ENST00000352241.4:c.274G>A	p.Val92Met	p.V92M	ENST00000352241	NM_198159.2	92	Gtg/Atg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200297	138200297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs556022420		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	80	437	0	ENST00000237289.4:c.1715G>A	p.Arg572Gln	p.R572Q	ENST00000237289	NM_001270507.1	572	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906768	50906768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs373046355		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	132	774	0	ENST00000440232.2:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000440232	NM_002691.3	386	Cgt/Tgt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953083	2953083	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1322611135		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	133	728	0	ENST00000396946.4:c.2857G>A	p.Glu953Lys	p.E953K	ENST00000396946	NM_032415.4	953	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781318	3781318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	160	858	0	ENST00000262367.5:c.5047C>A	p.Arg1683Ser	p.R1683S	ENST00000262367	NM_004380.2	1683	Cgc/Agc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829646	72829646	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767087836		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	51	627	0	ENST00000268489.5:c.6935G>A	p.Arg2312Gln	p.R2312Q	ENST00000268489	NM_006885.3	2312	cGg/cAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944156	81944156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773800539		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	121	638	3	ENST00000359376.3:c.1765C>T	p.Arg589Cys	p.R589C	ENST00000359376	NM_002661.3	589	Cgc/Tgc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030588	48030588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63749843		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	70	356	1	ENST00000234420.5:c.3202C>T	p.Arg1068Ter	p.R1068*	ENST00000234420	NM_000179.2	1068	Cga/Tga																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743839	46743839	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs142058773		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	99	701	0	ENST00000371975.4:c.2129C>G	p.Thr710Ser	p.T710S	ENST00000371975	NM_003579.3	710	aCt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310435	65310435	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	95	431	0	ENST00000342505.4:c.2251+2T>G		p.X751_splice	ENST00000342505	NM_002227.2	751																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344706	65344706	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	59	272	0	ENST00000342505.4:c.329+2T>C		p.X110_splice	ENST00000342505	NM_002227.2	110																																																																															
JAK1	3716	MSKCC	GRCh37	1	65344711	65344711	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	63	281	0	ENST00000342505.4:c.326T>G	p.Met109Arg	p.M109R	ENST00000342505	NM_002227.2	109	aTg/aGg																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226259103	226259103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	11	27	0	ENST00000366813.1:c.334G>A	p.Ala112Thr	p.A112T	ENST00000366813		112	Gct/Act																																																																														
MRE11A	0	MSKCC	GRCh37	11	94203728	94203728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	24	282	0	ENST00000323929.3:c.926T>C	p.Met309Thr	p.M309T	ENST00000323929	NM_005591.3	309	aTg/aCg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998573	100998573	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	139	691	0	ENST00000325455.5:c.1229A>G	p.Asn410Ser	p.N410S	ENST00000325455	NM_001202474.3	410	aAc/aGc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	422253	422253	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374400044		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	60	497	0	ENST00000399788.2:c.3005G>A	p.Arg1002Gln	p.R1002Q	ENST00000399788	NM_001042603.1	1002	cGa/cAa																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025633	1025633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754974791		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	22	575	0	ENST00000358495.3:c.742G>A	p.Ala248Thr	p.A248T	ENST00000358495	NM_134424.2	248	Gcc/Acc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46205293	46205293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	43	429	0	ENST00000334344.6:c.377C>T	p.Ala126Val	p.A126V	ENST00000334344	NM_152641.2	126	gCa/gTa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863394	57863394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs533875222		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	129	711	1	ENST00000228682.2:c.1489C>T	p.Arg497Cys	p.R497C	ENST00000228682	NM_005269.2	497	Cgc/Tgc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865699	57865699	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	145	805	0	ENST00000228682.2:c.3176T>C	p.Leu1059Pro	p.L1059P	ENST00000228682	NM_005269.2	1059	cTg/cCg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120783437	120783437	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	99	637	0	ENST00000257552.2:c.1048-2A>G		p.X350_splice	ENST00000257552	NM_002442.3	350																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103520472	103520472	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1187994214		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	21	221	0	ENST00000355739.4:c.2543G>A	p.Arg848Gln	p.R848Q	ENST00000355739	NM_000123.3	848	cGg/cAg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528186	103528186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	82	388	0	ENST00000355739.4:c.3494C>T	p.Ala1165Val	p.A1165V	ENST00000355739	NM_000123.3	1165	gCc/gTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436072	110436072	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	219	803	0	ENST00000375856.3:c.2329A>G	p.Thr777Ala	p.T777A	ENST00000375856	NM_003749.2	777	Acg/Gcg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639155	3639155	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777033175		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	144	771	2	ENST00000294008.3:c.4484C>T	p.Ala1495Val	p.A1495V	ENST00000294008	NM_032444.2	1495	gCg/gTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89383346	89383346	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	122	609	1	ENST00000301030.4:c.82A>G	p.Lys28Glu	p.K28E	ENST00000301030	NM_001256183.1	28	Aaa/Gaa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7978924	7978924	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145434489		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	100	388	0	ENST00000319144.4:c.1643G>A	p.Arg548Gln	p.R548Q	ENST00000319144	NM_001139.2	548	cGg/cAg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223454	2223454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	93	443	0	ENST00000398665.3:c.3565C>T	p.Pro1189Ser	p.P1189S	ENST00000398665	NM_032482.2	1189	Cca/Tca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271900	15271900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	126	856	0	ENST00000263388.2:c.6539C>A	p.Pro2180His	p.P2180H	ENST00000263388	NM_000435.2	2180	cCt/cAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276251	15276251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752426825		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	166	626	0	ENST00000263388.2:c.5743C>T	p.Arg1915Cys	p.R1915C	ENST00000263388	NM_000435.2	1915	Cgc/Tgc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967069	18967069	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	137	711	0	ENST00000262803.5:c.1784A>G	p.Tyr595Cys	p.Y595C	ENST00000262803	NM_002911.3	595	tAc/tGc																																																																														
AKT2	208	MSKCC	GRCh37	19	40761138	40761138	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	175	640	0	ENST00000392038.2:c.214A>G	p.Thr72Ala	p.T72A	ENST00000392038	NM_001626.4	72	Acc/Gcc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753278	42753278	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1272093617		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	191	905	0	ENST00000222329.4:c.986G>A	p.Arg329His	p.R329H	ENST00000222329	NM_006494.2	329	cGc/cAc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965986	25965986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	89	684	0	ENST00000435504.4:c.3220G>A	p.Val1074Ile	p.V1074I	ENST00000435504		1074	Gtt/Att																																																																														
ALK	238	MSKCC	GRCh37	2	29551271	29551271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	132	680	1	ENST00000389048.3:c.1359G>T	p.Gln453His	p.Q453H	ENST00000389048	NM_004304.4	453	caG/caT																																																																														
PMS1	5378	MSKCC	GRCh37	2	190742113	190742113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	27	375	0	ENST00000441310.2:c.2750A>G	p.His917Arg	p.H917R	ENST00000441310	NM_000534.4	917	cAt/cGt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794348	242794348	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	106	712	0	ENST00000334409.5:c.592+2T>C		p.X198_splice	ENST00000334409	NM_005018.2	198																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31387128	31387128	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750849178		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	138	534	1	ENST00000328111.2:c.1753G>A	p.Ala585Thr	p.A585T	ENST00000328111	NM_006892.3	585	Gcg/Acg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24143163	24143163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	108	624	0	ENST00000263121.7:c.395T>C	p.Val132Ala	p.V132A	ENST00000263121	NM_003073.3	132	gTa/gCa																																																																														
ATR	545	MSKCC	GRCh37	3	142177952	142177952	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	22	291	0	ENST00000350721.4:c.7351T>C	p.Tyr2451His	p.Y2451H	ENST00000350721	NM_001184.3	2451	Tac/Cac																																																																														
TP63	8626	MSKCC	GRCh37	3	189608661	189608661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	41	400	0	ENST00000264731.3:c.1736A>G	p.Tyr579Cys	p.Y579C	ENST00000264731	NM_003722.4	579	tAc/tGc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177079	56177079	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	27	236	0	ENST00000399503.3:c.2349A>C	p.Gln783His	p.Q783H	ENST00000399503	NM_005921.1	783	caA/caC																																																																														
APC	324	MSKCC	GRCh37	5	112175684	112175684	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	51	295	0	ENST00000257430.4:c.4393del	p.Ser1465ValfsTer8	p.S1465Vfs*8	ENST00000257430	NM_000038.5	1465	Agt/gt																																																																														
NPM1	4869	MSKCC	GRCh37	5	170832331	170832331	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	71	477	0	ENST00000296930.5:c.700del	p.Thr234LeufsTer11	p.T234Lfs*11	ENST00000296930	NM_002520.6	232	gAa/ga																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652146	36652146	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	146	663	0	ENST00000244741.5:c.268G>T	p.Gly90Ter	p.G90*	ENST00000244741	NM_000389.4	90	Gga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94124419	94124419	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs528743765		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	26	329	0	ENST00000369303.4:c.162+2T>C		p.X54_splice	ENST00000369303	NM_004440.3	54																																																																															
PRDM1	639	MSKCC	GRCh37	6	106534452	106534452	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	52	248	1	ENST00000369096.4:c.24A>C	p.Lys8Asn	p.K8N	ENST00000369096	NM_001198.3	8	aaA/aaC																																																																														
CDK6	1021	MSKCC	GRCh37	7	92355092	92355092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	10	207	0	ENST00000265734.4:c.385C>A	p.Leu129Ile	p.L129I	ENST00000265734	NM_001259.6	129	Ctt/Att																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845609	151845609	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs369745886		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	66	576	1	ENST00000262189.6:c.13403C>T	p.Thr4468Met	p.T4468M	ENST00000262189	NM_170606.2	4468	aCg/aTg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271298	38271298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	117	850	0	ENST00000425967.3:c.2410C>A	p.Leu804Met	p.L804M	ENST00000425967	NM_001174067.1	804	Ctg/Atg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864735	68864735	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1459888665		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	137	550	1	ENST00000288368.4:c.106C>T	p.Arg36Trp	p.R36W	ENST00000288368	NM_024870.2	36	Cgg/Tgg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759593	133759593	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1476030646		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	187	806	0	ENST00000318560.5:c.1916G>A	p.Arg639Gln	p.R639Q	ENST00000318560	NM_005157.4	639	cGa/cAa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314946	1314946	+	downstream_gene_variant	3'Flank	SNP	C	C	T	rs754939213		P-0043087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	50	472	0				ENST00000381566																																																																																	
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0043158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	23	350	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
SDHA	6389	MSKCC	GRCh37	5	223682	223682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs369321221		P-0043159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	132	395	0	ENST00000264932.6:c.149C>T	p.Ser50Phe	p.S50F	ENST00000264932	NM_004168.2	50	tCc/tTc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073913	8073913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	137	458	0	ENST00000377482.5:c.746C>T	p.Ser249Phe	p.S249F	ENST00000377482	NM_018948.3	249	tCt/tTt																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612977	228612977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151071964		P-0043159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	130	477	0	ENST00000366696.1:c.50C>T	p.Pro17Leu	p.P17L	ENST00000366696	NM_003493.2	17	cCg/cTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416195	416195	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	108	413	0	ENST00000399788.2:c.3991T>G	p.Ser1331Ala	p.S1331A	ENST00000399788	NM_001042603.1	1331	Tct/Gct																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0043254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	112	340	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0043254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	65	311	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs1131691042		P-0043254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	489	530	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46602969	46602969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs574490008		P-0043254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	454	670	0	ENST00000263734.3:c.1027G>A	p.Val343Ile	p.V343I	ENST00000263734	NM_001430.4	343	Gtc/Atc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	50	535	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	48	331	0				ENST00000310581	NM_198253.2																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	95	534	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	78	475	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	43	370	0	ENST00000257430.4:c.4473del	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711915	89711915	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786204866		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	91	509	0	ENST00000371953.3:c.533A>G	p.Tyr178Cys	p.Y178C	ENST00000371953	NM_000314.4	178	tAt/tGt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967309	134967309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186851943		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	76	606	0	ENST00000398015.3:c.2648G>A	p.Arg883Gln	p.R883Q	ENST00000398015	NM_004441.4	883	cGg/cAg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522740	67522741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	54	361	0	ENST00000274335.5:c.244dup	p.Ile82AsnfsTer24	p.I82Nfs*24	ENST00000274335		79	-/A																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915579	131915579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28903087		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	29	279	0	ENST00000265335.6:c.577C>T	p.Arg193Trp	p.R193W	ENST00000265335		193	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875055	151875055	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	65	189	0	ENST00000262189.6:c.7483C>T	p.Gln2495Ter	p.Q2495*	ENST00000262189	NM_170606.2	2495	Caa/Taa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262154	16262154	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs761478249		P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	26	309	0	ENST00000375759.3:c.9419C>T	p.Pro3140Leu	p.P3140L	ENST00000375759	NM_015001.2	3140	cCg/cTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692949	89692949	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	36	671	0	ENST00000371953.3:c.433T>A	p.Phe145Ile	p.F145I	ENST00000371953	NM_000314.4	145	Ttt/Att																																																																														
AXL	558	MSKCC	GRCh37	19	41758319	41758319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	100	661	0	ENST00000301178.4:c.1775T>C	p.Phe592Ser	p.F592S	ENST00000301178	NM_021913.4	592	tTt/tCt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441268	52441268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	79	568	0	ENST00000460680.1:c.502T>C	p.Phe168Leu	p.F168L	ENST00000460680	NM_004656.3	168	Ttc/Ctc																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374844	149374844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	58	347	0	ENST00000360632.3:c.250C>A	p.His84Asn	p.H84N	ENST00000360632	NM_015472.4	84	Cat/Aat																																																																														
MED12	9968	MSKCC	GRCh37	X	70342361	70342361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	96	591	0	ENST00000374080.3:c.1252C>T	p.Arg418Cys	p.R418C	ENST00000374080		418	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	607	425	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0043346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	271	664	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170531	11170531	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	264	649	0	ENST00000344626.4:c.4738G>T	p.Glu1580Ter	p.E1580*	ENST00000344626	NM_003072.3	1580	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913240		P-0043361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	139	449	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0043361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	52	260	0	ENST00000257430.4:c.4127_4128del	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0043361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	35	283	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42041074	42041074	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	200	586	0	ENST00000219905.7:c.5452C>T	p.Arg1818Ter	p.R1818*	ENST00000219905	NM_001164273.1	1818	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782292		P-0043361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	72	457	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108172509	108172510	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	48	236	1	ENST00000278616.4:c.5318dup	p.Phe1774ValfsTer8	p.F1774Vfs*8	ENST00000278616	NM_000051.3	1771	aga/agAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	162	336	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs763733111		P-0043393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	180	261	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
MED12	9968	MSKCC	GRCh37	X	70344165	70344165	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1355367439		P-0043393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	366	275	1	ENST00000374080.3:c.1901C>T	p.Pro634Leu	p.P634L	ENST00000374080		634	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0043393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	388	365	1				ENST00000310581	NM_198253.2																																																																																
PGR	5241	MSKCC	GRCh37	11	100933481	100933481	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs1209629034		P-0043393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	54	205	0	ENST00000325455.5:c.1909C>T	p.Arg637Ter	p.R637*	ENST00000325455	NM_001202474.3	637	Cga/Tga																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56171046	56171046	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	229	283	0	ENST00000399503.3:c.1874C>G	p.Thr625Ser	p.T625S	ENST00000399503	NM_005921.1	625	aCc/aGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259436	55259436	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745812480		P-0043393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	279	403	0	ENST00000275493.2:c.2494C>T	p.Arg832Cys	p.R832C	ENST00000275493	NM_005228.3	832	Cgc/Tgc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738406	145738406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs774850992		P-0043393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1992	241	712	1	ENST00000428558.2:c.2579C>T	p.Pro860Leu	p.P860L	ENST00000428558	NM_004260.3	860	cCg/cTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8339047	8339047	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	190	359	0	ENST00000356435.5:c.5254G>A	p.Glu1752Lys	p.E1752K	ENST00000356435		1752	Gag/Aag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0043397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	199	612	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0043397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	83	266	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0043397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	30	302	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0043397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	506	942	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18972931	18972931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	179	747	1	ENST00000262803.5:c.2570G>A	p.Arg857Lys	p.R857K	ENST00000262803	NM_002911.3	857	aGg/aAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0043480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	99	527	0	ENST00000275493.2:c.2303_2311dup	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	23	260	3	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17849781		P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	187	582	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	17	160	1	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175749	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTAT	TACTTTAT	-			P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	13	190	0	ENST00000257430.4:c.4461_4468del	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1486	gaTACTTTATta/gata																																																																														
BBC3	27113	MSKCC	GRCh37	19	47735855	47735855	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	157	499	1	ENST00000449228.1:c.5A>T	p.Lys2Ile	p.K2I	ENST00000449228	NM_001127240.2	2	aAa/aTa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38172194	38172195	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	70	233	0	ENST00000317025.8:c.2212_2213del	p.Ser738GlnfsTer8	p.S738Qfs*8	ENST00000317025	NM_023034.1	738	AGc/c																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38172997	38173013	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCACATCAGAAACGT	CTGCACATCAGAAACGT	-			P-0043532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	83	321	0	ENST00000317025.8:c.2036_2052del	p.Asp679ValfsTer15	p.D679Vfs*15	ENST00000317025	NM_023034.1	679	gACGTTTCTGATGTGCAG/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0043587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	696	658	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
PARP1	142	MSKCC	GRCh37	1	226552810	226552810	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1486968445		P-0043587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	185	541	0	ENST00000366794.5:c.2551T>A	p.Phe851Ile	p.F851I	ENST00000366794	NM_001618.3	851	Ttt/Att																																																																														
CASP8	841	MSKCC	GRCh37	2	202131434	202131438	+	frameshift_variant	Frame_Shift_Del	DEL	GATTA	GATTA	-			P-0043587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	136	428	0	ENST00000358485.4:c.402_406del	p.Ile135LeufsTer5	p.I135Lfs*5	ENST00000358485	NM_001080125.1	134	ctGATTAcc/ctcc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	248	567	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912657		P-0043591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	595	633	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61753649	61753649	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	85	321	0	ENST00000401558.2:c.134T>A	p.Met45Lys	p.M45K	ENST00000401558	NM_003400.3	45	aTg/aAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	497	407	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168490	56168491	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	270	282	0	ENST00000399503.3:c.1447dup	p.Arg483LysfsTer10	p.R483Kfs*10	ENST00000399503	NM_005921.1	482	-/A																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199469669		P-0043611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	20	398	1	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0043614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	268	474	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
ERBB4	2066	MSKCC	GRCh37	2	213403244	213403244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	85	398	0	ENST00000342788.4:c.11C>T	p.Ala4Val	p.A4V	ENST00000342788	NM_005235.2	4	gCg/gTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55973904	55973904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	89	353	0	ENST00000263923.4:c.1412G>T	p.Ser471Ile	p.S471I	ENST00000263923	NM_002253.2	471	aGc/aTc																																																																														
APC	324	MSKCC	GRCh37	5	112102961	112102961	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199842850		P-0043614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	77	339	0	ENST00000257430.4:c.296G>A	p.Arg99Gln	p.R99Q	ENST00000257430	NM_000038.5	99	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	53	527	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	34	243	0	ENST00000257430.4:c.4199del	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830777	72830777	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752574946		P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	54	458	0	ENST00000268489.5:c.5804G>A	p.Arg1935His	p.R1935H	ENST00000268489	NM_006885.3	1935	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916881	178916881	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	50	483	0	ENST00000263967.3:c.268T>G	p.Cys90Gly	p.C90G	ENST00000263967	NM_006218.2	90	Tgt/Ggt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31451710	31451710	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1466433904		P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	35	281	0	ENST00000344624.3:c.2612G>A	p.Arg871His	p.R871H	ENST00000344624		871	cGc/cAc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675405	30675405	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	55	431	0	ENST00000376406.3:c.2951T>A	p.Val984Glu	p.V984E	ENST00000376406	NM_014641.2	984	gTa/gAa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908790	101908790	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	32	248	0	ENST00000374994.4:c.1154A>G	p.Asp385Gly	p.D385G	ENST00000374994	NM_004612.2	385	gAt/gGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	99	435	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459758	149459758	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1029057991		P-0043650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1707	782	862	0	ENST00000286301.3:c.449G>A	p.Arg150His	p.R150H	ENST00000286301	NM_005211.3	150	cGc/cAc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1388201066		P-0043650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	50	136	0	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488685	212488685	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs138873985		P-0043650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	156	485	0	ENST00000342788.4:c.2164A>G	p.Lys722Glu	p.K722E	ENST00000342788	NM_005235.2	722	Aaa/Gaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	220	257	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023126	27023126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	29	39	1	ENST00000324856.7:c.232G>A	p.Glu78Lys	p.E78K	ENST00000324856	NM_006015.4	78	Gag/Aag																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	57	256	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	102	314	0	ENST00000304494.5:c.335G>C	p.Arg112Pro	p.R112P	ENST00000304494	NM_000077.4	112	cGt/cCt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	102	314	0	ENST00000304494.5:c.335G>C	p.Arg112Pro	p.R112P	ENST00000304494	NM_000077.4	112	cGt/cCt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	123	458	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	46	300	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141798398		P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	34	127	0	ENST00000304494.5:c.35C>T	p.Ser12Leu	p.S12L	ENST00000304494	NM_000077.4	12	tCg/tTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295217	1295217	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs796849347		P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	202	244	0				ENST00000310581	NM_198253.2																																																																																
JAK3	3718	MSKCC	GRCh37	19	17943717	17943717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	283	525	0	ENST00000458235.1:c.2372C>T	p.Pro791Leu	p.P791L	ENST00000458235	NM_000215.3	791	cCc/cTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100607	8100607	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1246283627		P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	138	650	0	ENST00000346208.3:c.581T>G	p.Met194Arg	p.M194R	ENST00000346208		194	aTg/aGg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180547	94180547	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	87	302	0	ENST00000323929.3:c.1621A>G	p.Ser541Gly	p.S541G	ENST00000323929	NM_005591.3	541	Agt/Ggt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109984	115109984	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	131	627	0	ENST00000257566.3:c.1894A>G	p.Asn632Asp	p.N632D	ENST00000257566	NM_016569.3	632	Aac/Gac																																																																														
POLE	5426	MSKCC	GRCh37	12	133248829	133248830	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	106	478	1	ENST00000320574.5:c.1765_1766delinsTT	p.Pro589Phe	p.P589F	ENST00000320574	NM_006231.2	589	CCt/TTt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549265	21549265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	330	612	0	ENST00000382592.4:c.3011C>T	p.Pro1004Leu	p.P1004L	ENST00000382592	NM_014572.2	1004	cCc/cTc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805026	89805026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	147	656	0	ENST00000389301.3:c.4351G>A	p.Glu1451Lys	p.E1451K	ENST00000389301	NM_000135.2	1451	Gag/Aag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554708	63554708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	99	401	0	ENST00000307078.5:c.31C>T	p.Pro11Ser	p.P11S	ENST00000307078	NM_004655.3	11	Ccg/Tcg																																																																														
PAK7	0	MSKCC	GRCh37	20	9520264	9520264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	186	302	0	ENST00000353224.5:c.2005G>A	p.Val669Ile	p.V669I	ENST00000353224	NM_177990.2	669	Gtt/Att																																																																														
SRC	6714	MSKCC	GRCh37	20	36031199	36031199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	135	592	1	ENST00000358208.4:c.1318G>A	p.Gly440Ser	p.G440S	ENST00000358208		440	Ggc/Agc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52598169	52598169	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	217	393	0	ENST00000394830.3:c.3697G>T	p.Glu1233Ter	p.E1233*	ENST00000394830	NM_018313.4	1233	Gag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52661304	52661304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	67	280	0	ENST00000394830.3:c.1526G>A	p.Ser509Asn	p.S509N	ENST00000394830	NM_018313.4	509	aGt/aAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532539	187532540	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	37	244	0	ENST00000441802.2:c.9853_9853+1delinsAA		p.X3285_splice	ENST00000441802	NM_005245.3	3285																																																																															
APC	324	MSKCC	GRCh37	5	112179425	112179425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	74	358	1	ENST00000257430.4:c.8134C>A	p.Pro2712Thr	p.P2712T	ENST00000257430	NM_000038.5	2712	Ccc/Acc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100484	157100484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	35	32	0	ENST00000346085.5:c.1421G>A	p.Gly474Asp	p.G474D	ENST00000346085	NM_020732.3	474	gGc/gAc																																																																														
CD274	29126	MSKCC	GRCh37	9	5457093	5457093	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1485681345		P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	48	214	0	ENST00000381577.3:c.67G>A	p.Val23Ile	p.V23I	ENST00000381577	NM_014143.3	23	Gtt/Att																																																																														
ABL1	25	MSKCC	GRCh37	9	133748276	133748276	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	164	505	0	ENST00000318560.5:c.937A>G	p.Ile313Val	p.I313V	ENST00000318560	NM_005157.4	313	Atc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0043719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	61	235	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121912655		P-0043719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	204	433	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																														
APC	324	MSKCC	GRCh37	5	112175760	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	115	202	0	ENST00000257430.4:c.4469del	p.His1490LeufsTer17	p.H1490Lfs*17	ENST00000257430	NM_000038.5	1490	cAt/ct																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423605	88423605	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	74	351	0	ENST00000360948.2:c.2230T>A	p.Tyr744Asn	p.Y744N	ENST00000360948	NM_001012338.2	744	Tac/Aac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530443	187530443	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	36	173	0	ENST00000441802.2:c.10100A>G	p.Asn3367Ser	p.N3367S	ENST00000441802	NM_005245.3	3367	aAc/aGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	592	484	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	427	204	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	39	152	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25458617	25458617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	81	339	0	ENST00000264709.3:c.2556G>T	p.Met852Ile	p.M852I	ENST00000264709	NM_175629.2	852	atG/atT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790097	40790097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	194	451	0	ENST00000373198.4:c.2634C>A	p.Ser878Arg	p.S878R	ENST00000373198	NM_133170.3	878	agC/agA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944620	40944620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	100	224	0	ENST00000373198.4:c.1882G>T	p.Val628Phe	p.V628F	ENST00000373198	NM_133170.3	628	Gtc/Ttc																																																																														
APC	324	MSKCC	GRCh37	5	112173686	112173687	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0043730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	120	215	0	ENST00000257430.4:c.2396_2397del	p.Tyr799CysfsTer3	p.Y799Cfs*3	ENST00000257430	NM_000038.5	799	TAt/t																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622182	117622182	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	60	214	0	ENST00000368508.3:c.6688A>G	p.Arg2230Gly	p.R2230G	ENST00000368508	NM_002944.2	2230	Aga/Gga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106336	27106337	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	137	467	0	ENST00000324856.7:c.5952_5953del	p.Ser1985GlnfsTer13	p.S1985Qfs*13	ENST00000324856	NM_006015.4	1983	TGt/t																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363268	40363268	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201425251		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	156	471	0	ENST00000397332.2:c.961C>T	p.Arg321Cys	p.R321C	ENST00000397332	NM_001033082.2	321	Cgc/Tgc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874274	155874274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1185965337		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	103	436	0	ENST00000368323.3:c.257G>A	p.Arg86Gln	p.R86Q	ENST00000368323	NM_006912.5	86	cGg/cAg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175813	176175813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	36	342	0	ENST00000367669.3:c.302G>A	p.Gly101Asp	p.G101D	ENST00000367669	NM_022457.5	101	gGc/gAc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651652	206651652	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	180	634	2	ENST00000367120.3:c.962T>C	p.Leu321Pro	p.L321P	ENST00000367120	NM_014002.3	321	cTg/cCg																																																																														
RET	5979	MSKCC	GRCh37	10	43597893	43597895	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	130	673	0	ENST00000355710.3:c.443_445del	p.Ser148del	p.S148del	ENST00000355710	NM_020975.4	147	ttCTCc/ttc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653780	89653781	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	27	264	0	ENST00000371953.3:c.80-1_80del		p.X27_splice	ENST00000371953	NM_000314.4	27																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692910	89692910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	75	394	0	ENST00000371953.3:c.394G>A	p.Gly132Ser	p.G132S	ENST00000371953	NM_000314.4	132	Ggt/Agt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	132	382	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925589	114925589	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs749975791		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	145	581	0	ENST00000543371.1:c.1667T>C	p.Leu556Pro	p.L556P	ENST00000543371	NM_001198531.1	556	cTg/cCg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925646	114925646	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779491224		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	149	632	0	ENST00000543371.1:c.1724C>T	p.Pro575Leu	p.P575L	ENST00000543371	NM_001198531.1	575	cCg/cTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941862	71941862	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	61	523	0	ENST00000298229.2:c.1220T>A	p.Leu407Gln	p.L407Q	ENST00000298229	NM_001567.3	407	cTg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421701	49421701	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	96	536	0	ENST00000301067.7:c.14528del	p.Lys4843ArgfsTer15	p.K4843Rfs*15	ENST00000301067	NM_003482.3	4843	aAg/ag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438691	49438691	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	95	643	0	ENST00000301067.7:c.4799T>G	p.Leu1600Arg	p.L1600R	ENST00000301067	NM_003482.3	1600	cTg/cGg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	49	350	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																														
MGA	23269	MSKCC	GRCh37	15	42034986	42034986	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1469072500		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	85	533	0	ENST00000219905.7:c.4828A>G	p.Thr1610Ala	p.T1610A	ENST00000219905	NM_001164273.1	1610	Act/Gct																																																																														
MGA	23269	MSKCC	GRCh37	15	42054396	42054396	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	79	301	0	ENST00000219905.7:c.7585del	p.Arg2529GlufsTer28	p.R2529Efs*28	ENST00000219905	NM_001164273.1	2527	cAa/ca																																																																														
B2M	567	MSKCC	GRCh37	15	45007895	45007896	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	52	274	0	ENST00000558401.1:c.343_344del	p.Trp115GlyfsTer12	p.W115Gfs*12	ENST00000558401	NM_004048.2	114	aaGTgg/aagg																																																																														
B2M	567	MSKCC	GRCh37	15	45007896	45007897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	70	269	0	ENST00000558401.1:c.346+1dup		p.W115fs	ENST00000558401	NM_004048.2	115	tgg/tGgg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347095	89347095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	113	522	0	ENST00000301030.4:c.5855A>G	p.His1952Arg	p.H1952R	ENST00000301030	NM_001256183.1	1952	cAc/cGc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348062	89348062	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1466196842		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	224	860	2	ENST00000301030.4:c.4888G>A	p.Gly1630Arg	p.G1630R	ENST00000301030	NM_001256183.1	1630	Ggg/Agg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350035	89350035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	85	641	0	ENST00000301030.4:c.2915A>G	p.His972Arg	p.H972R	ENST00000301030	NM_001256183.1	972	cAc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	135	427	1	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																														
NF1	4763	MSKCC	GRCh37	17	29665120	29665120	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201336602		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	47	447	0	ENST00000358273.4:c.6782A>G	p.His2261Arg	p.H2261R	ENST00000358273	NM_001042492.2	2261	cAt/cGt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687124	37687124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	61	512	0	ENST00000447079.4:c.4028G>T	p.Gly1343Val	p.G1343V	ENST00000447079	NM_015083.1	1343	gGg/gTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883561	37883561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	126	537	0	ENST00000269571.5:c.3173A>G	p.Asp1058Gly	p.D1058G	ENST00000269571		1058	gAc/gGc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47677825	47677825	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	128	482	0	ENST00000347630.2:c.1040A>G	p.His347Arg	p.H347R	ENST00000347630	NM_001007230.1	347	cAc/cGc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	143	602	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1297203260		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	111	436	4	ENST00000245479.2:c.916del	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119035	3119035	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1291813342		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	139	512	0	ENST00000078429.4:c.719T>C	p.Val240Ala	p.V240A	ENST00000078429	NM_002067.2	240	gTg/gCg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	78	582	2	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	171	681	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905875	50905875	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	142	605	2	ENST00000440232.2:c.847C>T	p.Gln283Ter	p.Q283*	ENST00000440232	NM_002691.3	283	Cag/Tag																																																																														
CENPA	1058	MSKCC	GRCh37	2	27016047	27016047	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	142	533	0	ENST00000335756.4:c.323A>G	p.Asp108Gly	p.D108G	ENST00000335756	NM_001809.3	108	gAc/gGc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222520	39222520	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	89	371	2	ENST00000402219.2:c.3090del	p.Lys1030AsnfsTer6	p.K1030Nfs*6	ENST00000402219	NM_005633.3	1030	aaA/aa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	153	603	2	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52582098	52582098	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	32	247	0	ENST00000394830.3:c.4730A>G	p.Tyr1577Cys	p.Y1577C	ENST00000394830	NM_018313.4	1577	tAc/tGc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119666143	119666143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769576748		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	62	313	0	ENST00000316626.5:c.338G>A	p.Arg113His	p.R113H	ENST00000316626		113	cGt/cAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106155466	106155466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749710391		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	88	345	1	ENST00000380013.4:c.367C>T	p.Arg123Cys	p.R123C	ENST00000380013	NM_001127208.2	123	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	120	413	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253805	153253805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	93	376	0	ENST00000281708.4:c.928T>C	p.Tyr310His	p.Y310H	ENST00000281708	NM_033632.3	310	Tac/Cac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541358	187541359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	86	346	0	ENST00000441802.2:c.6381dup	p.Gln2128SerfsTer7	p.Q2128Sfs*7	ENST00000441802	NM_005245.3	2127	-/T																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629661	187629663	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs760967821		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	145	481	0	ENST00000441802.2:c.1319_1321del	p.Thr440del	p.T440del	ENST00000441802	NM_005245.3	440	aCAAgt/agt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	77	267	2	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177828	56177828	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	101	331	1	ENST00000399503.3:c.2803del	p.Ser935GlnfsTer2	p.S935Qfs*2	ENST00000399503	NM_005921.1	934	aTt/at																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	56	247	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
APC	324	MSKCC	GRCh37	5	112177265	112177265	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	55	292	0	ENST00000257430.4:c.5978del	p.Pro1993LeufsTer51	p.P1993Lfs*51	ENST00000257430	NM_000038.5	1992	Ccc/cc																																																																														
IRF4	3662	MSKCC	GRCh37	6	407567	407567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	90	306	0	ENST00000380956.4:c.1325G>A	p.Arg442Lys	p.R442K	ENST00000380956	NM_001195286.1	442	aGa/aAa																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056566	26056566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1444425351		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	65	233	0	ENST00000343677.2:c.91A>G	p.Thr31Ala	p.T31A	ENST00000343677	NM_005319.3	31	Acg/Gcg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324655	31324655	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	26	293	0	ENST00000412585.2:c.153C>A	p.Tyr51Ter	p.Y51*	ENST00000412585	NM_005514.6	51	taC/taA																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816428	32816428	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	137	537	0	ENST00000354258.4:c.1746+1G>A		p.X582_splice	ENST00000354258	NM_000593.5	582																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821350	32821350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	65	682	0	ENST00000354258.4:c.244T>G	p.Trp82Gly	p.W82G	ENST00000354258	NM_000593.5	82	Tgg/Ggg																																																																														
FYN	2534	MSKCC	GRCh37	6	112020823	112020823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	100	302	0	ENST00000368678.4:c.748A>G	p.Thr250Ala	p.T250A	ENST00000368678		250	Acc/Gcc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	57	559	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146945	38146945	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	103	635	1	ENST00000317025.8:c.3197del	p.Asn1066ThrfsTer16	p.N1066Tfs*16	ENST00000317025	NM_023034.1	1066	aAc/ac																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205359	38205359	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	150	600	0	ENST00000317025.8:c.331T>C	p.Tyr111His	p.Y111H	ENST00000317025	NM_023034.1	111	Tat/Cat																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	150	659	1	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341773	8341773	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs761130552		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	100	513	0	ENST00000356435.5:c.4867A>G	p.Arg1623Gly	p.R1623G	ENST00000356435		1623	Aga/Gga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44879926	44879926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	81	505	0	ENST00000377967.4:c.515G>A	p.Arg172Gln	p.R172Q	ENST00000377967	NM_021140.2	172	cGa/cAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412473	63412473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	114	652	0	ENST00000330258.3:c.694del	p.Gln232LysfsTer50	p.Q232Kfs*50	ENST00000330258	NM_152424.3	232	Caa/aa																																																																														
XIAP	331	MSKCC	GRCh37	X	123019696	123019696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147946593		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	96	475	2	ENST00000355640.3:c.184C>T	p.Arg62Trp	p.R62W	ENST00000355640		62	Cgg/Tgg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200029	123200029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	26	181	0	ENST00000218089.9:c.2101C>T	p.His701Tyr	p.H701Y	ENST00000218089	NM_001042749.1	701	Cat/Tat																																																																														
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	23	233	2	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324886	31324887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760037174		P-0043781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	62	415	0	ENST00000412585.2:c.49_50insG	p.Leu17ArgfsTer82	p.L17Rfs*82	ENST00000412585	NM_005514.6	17	ctg/cGtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579494	7579494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	788	671	1	ENST00000269305.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000269305	NM_001126112.2	65	Aga/Tga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789661	3789661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	303	535	0	ENST00000262367.5:c.4198G>C	p.Glu1400Gln	p.E1400Q	ENST00000262367	NM_004380.2	1400	Gag/Cag																																																																														
TET1	80312	MSKCC	GRCh37	10	70411602	70411602	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0043789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	163	251	0	ENST00000373644.4:c.4277-1G>C		p.X1426_splice	ENST00000373644	NM_030625.2	1426																																																																															
FLT1	2321	MSKCC	GRCh37	13	28880842	28880842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	299	522	0	ENST00000282397.4:c.3788G>A	p.Ser1263Asn	p.S1263N	ENST00000282397	NM_002019.4	1263	aGc/aAc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2115571	2115606	+	inframe_deletion	In_Frame_Del	DEL	GCCGCATACTCGGCCTCCTTGGAGGATGTGAAGACA	GCCGCATACTCGGCCTCCTTGGAGGATGTGAAGACA	-			P-0043789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	342	554	0	ENST00000219476.3:c.1655_1690del	p.Ala552_Ala563del	p.A552_A563del	ENST00000219476	NM_000548.3	551	GCCGCATACTCGGCCTCCTTGGAGGATGTGAAGACA/-																																																																														
ERG	2078	MSKCC	GRCh37	21	39795331	39795331	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0043789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	248	446	0	ENST00000288319.7:c.388+1G>T		p.X130_splice	ENST00000288319	NM_182918.3	130																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0043833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	194	556	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023151	27023179	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	-			P-0043833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	68	28	0	ENST00000324856.7:c.267_295del	p.Ser90ProfsTer11	p.S90Pfs*11	ENST00000324856	NM_006015.4	86	gGCGGAGCCGGCAGCGGCGGCGGGCCCGGC/g																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913400		P-0043912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	106	322	0	ENST00000349496.5:c.98C>A	p.Ser33Tyr	p.S33Y	ENST00000349496	NM_001904.3	33	tCt/tAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0043912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	50	214	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845618	63845618	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	101	242	0	ENST00000279873.7:c.1359del	p.Glu454LysfsTer25	p.E454Kfs*25	ENST00000279873	NM_032199.2	453	Aaa/aa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590496	67590496	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	66	186	0	ENST00000274335.5:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000274335		520	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106658	27106658	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	231	586	0	ENST00000324856.7:c.6269A>G	p.His2090Arg	p.H2090R	ENST00000324856	NM_006015.4	2090	cAc/cGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717656	89717657	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	150	433	0	ENST00000371953.3:c.683dup	p.Asn228LysfsTer15	p.N228Kfs*15	ENST00000371953	NM_000314.4	227	-/A																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125514429	125514429	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1183852401		P-0043912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	117	325	0	ENST00000428830.2:c.1124A>G	p.Lys375Arg	p.K375R	ENST00000428830	NM_001114121.2	375	aAa/aGa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528465	157528466	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	198	501	0	ENST00000346085.5:c.6192dup	p.Asp2065ArgfsTer24	p.D2065Rfs*24	ENST00000346085	NM_020732.3	2064	caa/cAaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	307	281	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	1063	758	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
TET1	80312	MSKCC	GRCh37	10	70333850	70333850	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs762232511		P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	99	312	0	ENST00000373644.4:c.1755G>T	p.Lys585Asn	p.K585N	ENST00000373644	NM_030625.2	585	aaG/aaT																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911485	134911485	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	152	454	0	ENST00000398015.3:c.1950C>G	p.Ile650Met	p.I650M	ENST00000398015	NM_004441.4	650	atC/atG																																																																														
INSR	3643	MSKCC	GRCh37	19	7184495	7184495	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1448475843		P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	356	550	0	ENST00000302850.5:c.806C>T	p.Pro269Leu	p.P269L	ENST00000302850	NM_000208.2	269	cCg/cTg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076785	72076785	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs576347795		P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	208	377	0	ENST00000357731.5:c.712G>A	p.Gly238Arg	p.G238R	ENST00000357731	NM_173808.2	238	Gga/Aga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426235	49426235	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	196	732	0	ENST00000301067.7:c.12253C>T	p.Gln4085Ter	p.Q4085*	ENST00000301067	NM_003482.3	4085	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	49027245	49027246	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	188	241	0	ENST00000267163.4:c.1813dup	p.Met605AsnfsTer48	p.M605Nfs*48	ENST00000267163	NM_000321.2	604	-/A																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554912	187554912	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	73	379	0	ENST00000441802.2:c.4249C>G	p.Leu1417Val	p.L1417V	ENST00000441802	NM_005245.3	1417	Ctt/Gtt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256735	16256735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	121	390	0	ENST00000375759.3:c.4000G>A	p.Glu1334Lys	p.E1334K	ENST00000375759	NM_015001.2	1334	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913176	32913176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397507737		P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	119	389	0	ENST00000380152.3:c.4684C>T	p.Gln1562Ter	p.Q1562*	ENST00000380152		1562	Caa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041762	42041762	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	103	321	0	ENST00000219905.7:c.5957G>C	p.Arg1986Thr	p.R1986T	ENST00000219905	NM_001164273.1	1986	aGa/aCa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3929832	3929832	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	296	395	0	ENST00000262367.5:c.85+1G>T		p.X29_splice	ENST00000262367	NM_004380.2	29																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81939032	81939032	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752906992		P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	125	375	0	ENST00000359376.3:c.1387G>A	p.Asp463Asn	p.D463N	ENST00000359376	NM_002661.3	463	Gat/Aat																																																																														
ERF	2077	MSKCC	GRCh37	19	42753000	42753017	+	inframe_deletion	In_Frame_Del	DEL	GCGGGGGCGGTGGGGCTA	GCGGGGGCGGTGGGGCTA	-			P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	180	628	0	ENST00000222329.4:c.1247_1264del	p.Leu416_Pro421del	p.L416_P421del	ENST00000222329	NM_006494.2	416	cTAGCCCCACCGCCCCCGCca/cca																																																																														
ALK	238	MSKCC	GRCh37	2	29416416	29416416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374733353		P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	187	556	0	ENST00000389048.3:c.4537G>A	p.Glu1513Lys	p.E1513K	ENST00000389048	NM_004304.4	1513	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538326	187538326	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	93	318	0	ENST00000441802.2:c.8908G>C	p.Glu2970Gln	p.E2970Q	ENST00000441802	NM_005245.3	2970	Gaa/Caa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39002640	39002640	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	61	190	0	ENST00000357387.3:c.389C>G	p.Ala130Gly	p.A130G	ENST00000357387	NM_152756.3	130	gCt/gGt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553399	106553399	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868421988		P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	95	288	0	ENST00000369096.4:c.1364G>A	p.Ser455Asn	p.S455N	ENST00000369096	NM_001198.3	455	aGc/aAc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468047	50468047	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	129	400	0	ENST00000331340.3:c.1282C>G	p.Leu428Val	p.L428V	ENST00000331340	NM_006060.4	428	Ctc/Gtc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845932	151845932	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	93	447	0	ENST00000262189.6:c.13080G>A	p.Trp4360Ter	p.W4360*	ENST00000262189	NM_170606.2	4360	tgG/tgA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1549	107	329	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911072	29911072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	138	532	1	ENST00000376809.5:c.371G>A	p.Gly124Asp	p.G124D	ENST00000376809	NM_002116.7	124	gGc/gAc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441147	149441147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	212	527	0	ENST00000286301.3:c.1765G>A	p.Gly589Arg	p.G589R	ENST00000286301	NM_005211.3	589	Gga/Aga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437457	49437458	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0043935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	287	503	0	ENST00000301067.7:c.5426_5427dup	p.Gly1810MetfsTer43	p.G1810Mfs*43	ENST00000301067	NM_003482.3	1809	-/AT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828138	3828138	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	228	366	0	ENST00000262367.5:c.1987A>T	p.Lys663Ter	p.K663*	ENST00000262367	NM_004380.2	663	Aaa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142275345	142275345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	237	359	0	ENST00000350721.4:c.1958C>A	p.Thr653Lys	p.T653K	ENST00000350721	NM_001184.3	653	aCa/aAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56179364	56179365	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0043935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	51	139	0	ENST00000399503.3:c.3679_3680del	p.Leu1227ThrfsTer11	p.L1227Tfs*11	ENST00000399503	NM_005921.1	1226	aCT/a																																																																														
VHL	7428	MSKCC	GRCh37	3	10188247	10188251	+	frameshift_variant	Frame_Shift_Del	DEL	TAACC	TAACC	-			P-0044026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	193	584	0	ENST00000256474.2:c.390_394del	p.Gln132Ter	p.Q132*	ENST00000256474	NM_000551.3	130	gtTAACCaa/gtaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584592	52584592	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	186	579	0	ENST00000394830.3:c.4421del	p.Ala1474ValfsTer15	p.A1474Vfs*15	ENST00000394830	NM_018313.4	1474	gCt/gt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266110	41266110	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	12	402	0	ENST00000349496.5:c.107A>C	p.His36Pro	p.H36P	ENST00000349496	NM_001904.3	36	cAt/cCt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306676	41306676	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754008236		P-0044062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	53	572	2	ENST00000373198.4:c.983G>A	p.Arg328His	p.R328H	ENST00000373198	NM_133170.3	328	cGc/cAc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577375	64577375	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1057517902		P-0044062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	356	625	0	ENST00000337652.1:c.207del	p.Asp70ThrfsTer49	p.D70Tfs*49	ENST00000337652	NM_130803.2	69	ccC/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0044101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	634	761	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720741	89720741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs371387815		P-0044101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	16	166	0	ENST00000371953.3:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000371953	NM_000314.4	298	Caa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591109	67591109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	137	300	0	ENST00000274335.5:c.1702C>G	p.Pro568Ala	p.P568A	ENST00000274335		568	Cca/Gca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245518	153245518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	187	436	0	ENST00000281708.4:c.1673C>A	p.Ser558Tyr	p.S558Y	ENST00000281708	NM_033632.3	558	tCt/tAt																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907626	111907627	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0044101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	307	295	0	ENST00000393256.3:c.400_401del	p.Met134GlufsTer4	p.M134Efs*4	ENST00000393256	NM_006538.4	134	ATg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	371	819	0	ENST00000269305.4:c.403del	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662554	227662554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs866672328		P-0044102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	322	597	1	ENST00000305123.5:c.901C>T	p.Arg301Cys	p.R301C	ENST00000305123	NM_005544.2	301	Cgc/Tgc																																																																														
KIT	3815	MSKCC	GRCh37	4	55602733	55602733	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs555650901		P-0044102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	149	384	0	ENST00000288135.5:c.2554G>A	p.Val852Ile	p.V852I	ENST00000288135	NM_000222.2	852	Gtc/Atc																																																																														
MGA	23269	MSKCC	GRCh37	15	41999951	41999951	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	230	549	0	ENST00000219905.7:c.2214T>G	p.Asp738Glu	p.D738E	ENST00000219905	NM_001164273.1	738	gaT/gaG																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225572	26225572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	203	453	0	ENST00000360408.1:c.190C>T	p.Arg64Trp	p.R64W	ENST00000360408	NM_003532.2	64	Cgg/Tgg																																																																														
MET	4233	MSKCC	GRCh37	7	116422147	116422150	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGTA	TGTA	-			P-0044102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	52	321	0	ENST00000397752.3:c.3632_3632+3del		p.CM1210fs	ENST00000397752	NM_000245.2	1210	TGTAtg/tg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519968		P-0044104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	60	466	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																														
MET	4233	MSKCC	GRCh37	7	116403319	116403319	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	62	455	0	ENST00000397752.3:c.2580T>G	p.Ile860Met	p.I860M	ENST00000397752	NM_000245.2	860	atT/atG																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775623976		P-0044130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	65	348	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913492		P-0044130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	71	645	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa																																																																														
PARP1	142	MSKCC	GRCh37	1	226567840	226567840	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	68	639	0	ENST00000366794.5:c.1326G>T	p.Lys442Asn	p.K442N	ENST00000366794	NM_001618.3	442	aaG/aaT																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645424	67645424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	21	519	0	ENST00000264010.4:c.689A>G	p.Glu230Gly	p.E230G	ENST00000264010	NM_006565.3	230	gAa/gGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	397	471	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	585	764	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	205	380	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777838	3777838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs863223334		P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	695	1179	1	ENST00000262367.5:c.7210G>A	p.Glu2404Lys	p.E2404K	ENST00000262367	NM_004380.2	2404	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221800	55221800	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199796955		P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	428	870	0	ENST00000275493.2:c.844G>A	p.Glu282Lys	p.E282K	ENST00000275493	NM_005228.3	282	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68771344	68771344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	239	350	0	ENST00000261769.5:c.26C>G	p.Ser9Trp	p.S9W	ENST00000261769	NM_004360.3	9	tCg/tGg																																																																														
CASP8	841	MSKCC	GRCh37	2	202149658	202149658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	285	566	0	ENST00000358485.4:c.1099G>T	p.Asp367Tyr	p.D367Y	ENST00000358485	NM_001080125.1	367	Gac/Tac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118380683	118380683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	230	418	0	ENST00000534358.1:c.10921G>A	p.Glu3641Lys	p.E3641K	ENST00000534358	NM_005933.3	3641	Gag/Aag																																																																														
TET1	80312	MSKCC	GRCh37	10	70404530	70404530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	256	543	0	ENST00000373644.4:c.2044G>A	p.Glu682Lys	p.E682K	ENST00000373644	NM_030625.2	682	Gaa/Aaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123196788	123196788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	127	572	0	ENST00000218089.9:c.1675G>A	p.Asp559Asn	p.D559N	ENST00000218089	NM_001042749.1	559	Gat/Aat																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325870	65325870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	325	623	0	ENST00000342505.4:c.1252G>C	p.Asp418His	p.D418H	ENST00000342505	NM_002227.2	418	Gat/Cat																																																																														
CBL	867	MSKCC	GRCh37	11	119145650	119145650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	230	328	1	ENST00000264033.4:c.856C>A	p.His286Asn	p.H286N	ENST00000264033	NM_005188.3	286	Cac/Aac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431445	49431445	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	503	829	0	ENST00000301067.7:c.9694G>T	p.Glu3232Ter	p.E3232*	ENST00000301067	NM_003482.3	3232	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445359	49445359	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	626	1152	3	ENST00000301067.7:c.2107G>T	p.Glu703Ter	p.E703*	ENST00000301067	NM_003482.3	703	Gag/Tag																																																																														
CASP8	841	MSKCC	GRCh37	2	202136289	202136289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	285	563	0	ENST00000358485.4:c.533C>G	p.Ser178Cys	p.S178C	ENST00000358485	NM_001080125.1	178	tCt/tGt																																																																														
ATR	545	MSKCC	GRCh37	3	142281833	142281833	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	240	488	0	ENST00000350721.4:c.411G>C	p.Lys137Asn	p.K137N	ENST00000350721	NM_001184.3	137	aaG/aaC																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288363	33288363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	350	519	0	ENST00000374542.5:c.1045G>C	p.Asp349His	p.D349H	ENST00000374542	NM_001141970.1	349	Gac/Cac																																																																														
EZH2	2146	MSKCC	GRCh37	7	148507494	148507494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	219	356	0	ENST00000320356.2:c.1960G>C	p.Asp654His	p.D654H	ENST00000320356	NM_004456.4	654	Gat/Cat																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220567	123220567	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	366	584	2	ENST00000218089.9:c.3224C>G	p.Ser1075Ter	p.S1075*	ENST00000218089	NM_001042749.1	1075	tCa/tGa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80338963		P-0044150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	95	383	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123331		P-0044150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	14	157	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0044150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	238	763	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398123121		P-0044150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	118	280	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154760	2154760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143785521		P-0044150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	263	916	0	ENST00000434045.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000434045	NM_001127598.1	154	cCg/cTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829907	72829907	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	172	724	0	ENST00000268489.5:c.6674A>C	p.Asp2225Ala	p.D2225A	ENST00000268489	NM_006885.3	2225	gAc/gCc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56415027	56415027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	90	393	0	ENST00000348428.3:c.2428G>A	p.Glu810Lys	p.E810K	ENST00000348428	NM_006785.3	810	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	18	359	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0044183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1456	127	853	2	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350505	15350505	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs540369634		P-0044183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	92	683	1	ENST00000263377.2:c.3410C>T	p.Pro1137Leu	p.P1137L	ENST00000263377	NM_058243.2	1137	cCg/cTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843609	3843609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	34	347	0	ENST00000262367.5:c.994G>T	p.Val332Leu	p.V332L	ENST00000262367	NM_004380.2	332	Gtg/Ttg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	48	306	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	186	508	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41545060	41545060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	66	399	1	ENST00000263253.7:c.2260C>T	p.Arg754Cys	p.R754C	ENST00000263253	NM_001429.3	754	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431898	49431898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	107	796	1	ENST00000301067.7:c.9241G>A	p.Glu3081Lys	p.E3081K	ENST00000301067	NM_003482.3	3081	Gaa/Aaa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94963999	94963999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1318902387		P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	66	205	2	ENST00000536441.1:c.26C>T	p.Ser9Leu	p.S9L	ENST00000536441	NM_144665.3	9	tCg/tTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045806	180045806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	97	808	0	ENST00000261937.6:c.2965G>A	p.Glu989Lys	p.E989K	ENST00000261937	NM_182925.4	989	Gag/Aag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984343	201984344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	141	581	0	ENST00000359651.3:c.1009dup	p.Tyr337LeufsTer134	p.Y337Lfs*134	ENST00000359651		336	-/T																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650645	18650645	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	28	328	0	ENST00000266497.5:c.2856G>C	p.Met952Ile	p.M952I	ENST00000266497		952	atG/atC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431430	49431430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	108	655	0	ENST00000301067.7:c.9709G>C	p.Glu3237Gln	p.E3237Q	ENST00000301067	NM_003482.3	3237	Gag/Cag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907237	32907237	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	43	364	0	ENST00000380152.3:c.1622A>G	p.Glu541Gly	p.E541G	ENST00000380152		541	gAa/gGa																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68290342	68290342	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G	rs761684336		P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	36	272	0	ENST00000487270.1:c.82C>G	p.Gln28Glu	p.Q28E	ENST00000487270	NM_133509.3	28	Cag/Gag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574334	95574334	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	25	247	0	ENST00000343455.3:c.2533T>G	p.Leu845Val	p.L845V	ENST00000343455	NM_177438.2	845	Ttg/Gtg																																																																														
EP300	2033	MSKCC	GRCh37	22	41560080	41560080	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1032317413		P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	49	319	0	ENST00000263253.7:c.3752G>A	p.Gly1251Glu	p.G1251E	ENST00000263253	NM_001429.3	1251	gGa/gAa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149245664	149245664	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	107	665	0	ENST00000360632.3:c.864G>C	p.Met288Ile	p.M288I	ENST00000360632	NM_015472.4	288	atG/atC																																																																														
NSD1	64324	MSKCC	GRCh37	5	176715865	176715865	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	87	597	0	ENST00000439151.2:c.6197G>C	p.Gly2066Ala	p.G2066A	ENST00000439151	NM_022455.4	2066	gGa/gCa																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983005	149983005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	33	412	0	ENST00000253339.5:c.3253G>C	p.Asp1085His	p.D1085H	ENST00000253339		1085	Gat/Cat																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946376	2946376	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866680537		P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	143	895	0	ENST00000396946.4:c.3361G>A	p.Glu1121Lys	p.E1121K	ENST00000396946	NM_032415.4	1121	Gaa/Aaa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797210	135797210	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	20	193	0	ENST00000298552.3:c.659T>A	p.Val220Asp	p.V220D	ENST00000298552	NM_001162426.1	220	gTc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0044225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	120	578	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0044225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	75	351	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057964	27057965	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0044225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	97	529	0	ENST00000324856.7:c.1674_1675del	p.Pro559LeufsTer63	p.P559Lfs*63	ENST00000324856	NM_006015.4	558	TCt/t																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0044254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	14	248	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779783		P-0044254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	12	246	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0044254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	28	550	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285792	46285792	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0044254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	13	256	0	ENST00000334344.6:c.5062-2A>G		p.X1688_splice	ENST00000334344	NM_152641.2	1688																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0044288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	25	102	3	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	455	617	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857785	9857785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	60	413	0	ENST00000330684.3:c.3616C>T	p.Arg1206Ter	p.R1206*	ENST00000330684	NM_001134407.1	1206	Cga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	30142885	30142885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766999851		P-0044288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	427	598	2	ENST00000389048.3:c.641G>A	p.Arg214His	p.R214H	ENST00000389048	NM_004304.4	214	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829281	72829281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	704	577	1	ENST00000268489.5:c.7300G>T	p.Glu2434Ter	p.E2434*	ENST00000268489	NM_006885.3	2434	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	208	529	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																														
CASP8	841	MSKCC	GRCh37	2	202149728	202149728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	203	512	0	ENST00000358485.4:c.1173del	p.Ile392SerfsTer4	p.I392Sfs*4	ENST00000358485	NM_001080125.1	390	gCc/gc																																																																														
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199469672		P-0044305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	40	523	0	ENST00000374080.3:c.131G>T	p.Gly44Val	p.G44V	ENST00000374080		44	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	190	357	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920774		P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	351	553	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	239	423	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	349	664	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	265	534	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652262	36652263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	323	589	0	ENST00000244741.5:c.387dup	p.Ser130ValfsTer67	p.S130Vfs*67	ENST00000244741	NM_000389.4	128	-/G																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907677	111907677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	238	375	0	ENST00000393256.3:c.451G>C	p.Glu151Gln	p.E151Q	ENST00000393256	NM_006538.4	151	Gag/Cag																																																																														
MGA	23269	MSKCC	GRCh37	15	42003545	42003545	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	168	310	0	ENST00000219905.7:c.3082C>T	p.Gln1028Ter	p.Q1028*	ENST00000219905	NM_001164273.1	1028	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087512	27087513	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	383	648	0	ENST00000324856.7:c.2090dup	p.Ser698ValfsTer119	p.S698Vfs*119	ENST00000324856	NM_006015.4	696	tcc/tCcc																																																																														
CBL	867	MSKCC	GRCh37	11	119156203	119156203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	285	491	0	ENST00000264033.4:c.1868C>T	p.Ser623Leu	p.S623L	ENST00000264033	NM_005188.3	623	tCa/tTa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964230	28964230	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	112	263	0	ENST00000282397.4:c.1672G>C	p.Gly558Arg	p.G558R	ENST00000282397	NM_002019.4	558	Ggg/Cgg																																																																														
RB1	5925	MSKCC	GRCh37	13	49039505	49039505	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	168	424	0	ENST00000267163.4:c.2489+1G>T		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40462679	40462679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	226	451	0	ENST00000345506.4:c.2377C>G	p.Leu793Val	p.L793V	ENST00000345506	NM_003152.3	793	Ctc/Gtc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554505	63554505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	102	589	0	ENST00000307078.5:c.234G>T	p.Trp78Cys	p.W78C	ENST00000307078	NM_004655.3	78	tgG/tgT																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792762	33792762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	69	77	0	ENST00000498907.2:c.559C>A	p.Pro187Thr	p.P187T	ENST00000498907	NM_004364.3	187	Ccg/Acg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105717	27105723	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGAA	AGAAGAA	GAAGAC			P-0044309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	141	331	0	ENST00000324856.7:c.5328_5334delinsGAAGAC	p.Glu1777LysfsTer5	p.E1777Kfs*5	ENST00000324856	NM_006015.4	1776	gaAGAAGAA/gaGAAGAC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0044309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	202	396	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653820	89653821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	165	309	0	ENST00000371953.3:c.121dup	p.Arg41LysfsTer3	p.R41Kfs*3	ENST00000371953	NM_000314.4	40	gaa/gAaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725003	89725045	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCATATTTGTGGGTTTTCATTTTAAATTTTCTTTCTCTAGGT	GTCATATTTGTGGGTTTTCATTTTAAATTTTCTTTCTCTAGGT	-			P-0044309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	17	159	0	ENST00000371953.3:c.1027-40_1029del		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71936196	71936197	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0044309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	167	230	0	ENST00000298229.2:c.168_169delinsAA	p.Phe56_Ala57delinsLeuThr	p.F56_A57delinsLT	ENST00000298229	NM_001567.3	56	ttCGcg/ttAAcg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138453	2138453	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375075952		P-0044309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	288	465	0	ENST00000219476.3:c.5266G>A	p.Glu1756Lys	p.E1756K	ENST00000219476	NM_000548.3	1756	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913400		P-0044309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	159	250	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11199382	11199383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	69	481	0	ENST00000361445.4:c.5108dup	p.Asn1703LysfsTer33	p.N1703Kfs*33	ENST00000361445	NM_004958.3	1703	aac/aaAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298651	11298651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	108	494	0	ENST00000361445.4:c.1810C>A	p.Arg604Ser	p.R604S	ENST00000361445	NM_004958.3	604	Cgc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023897	27023897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	26	102	0	ENST00000324856.7:c.1003C>T	p.Gln335Ter	p.Q335*	ENST00000324856	NM_006015.4	335	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	132	574	3	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	73	352	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330611	65330611	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	88	340	0	ENST00000342505.4:c.1035del	p.Lys345AsnfsTer32	p.K345Nfs*32	ENST00000342505	NM_002227.2	345	aaA/aa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115279377	115279377	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	16	265	0	ENST00000438362.2:c.638+2T>C		p.X213_splice	ENST00000438362	NM_001242891.1	213																																																																															
NUF2	83540	MSKCC	GRCh37	1	163309260	163309260	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	17	257	0	ENST00000271452.3:c.604del	p.Thr202ArgfsTer2	p.T202Rfs*2	ENST00000271452	NM_145697.2	200	cAa/ca																																																																														
AKT3	10000	MSKCC	GRCh37	1	243801030	243801030	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	33	160	0	ENST00000263826.5:c.444del	p.Phe148LeufsTer4	p.F148Lfs*4	ENST00000263826	NM_005465.4	148	ttT/tt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653782	89653783	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TC			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	51	154	0	ENST00000371953.3:c.81_82insCT	p.Ile28LeufsTer27	p.I28Lfs*27	ENST00000371953	NM_000314.4	27	tat/taTCt																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112764451	112764451	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	42	423	0	ENST00000369452.4:c.1063del	p.Ser355LeufsTer27	p.S355Lfs*27	ENST00000369452	NM_007373.3	354	Ttt/tt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs79184941		P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	61	287	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625249	69625249	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781935233		P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	144	638	0	ENST00000334134.2:c.544G>A	p.Val182Met	p.V182M	ENST00000334134	NM_005247.2	182	Gtg/Atg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	219	672	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	40	287	1	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																														
ATM	472	MSKCC	GRCh37	11	108172510	108172510	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	34	197	1	ENST00000278616.4:c.5318del	p.Lys1773SerfsTer3	p.K1773Sfs*3	ENST00000278616	NM_000051.3	1771	agA/ag																																																																														
MGA	23269	MSKCC	GRCh37	15	42003414	42003414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1269317379		P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	102	456	1	ENST00000219905.7:c.2951G>A	p.Arg984His	p.R984H	ENST00000219905	NM_001164273.1	984	cGc/cAc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128018	30128018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	108	600	0	ENST00000263025.4:c.1111T>C	p.Phe371Leu	p.F371L	ENST00000263025	NM_002746.2	371	Ttc/Ctc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644874	67644874	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	117	524	0	ENST00000264010.4:c.143del	p.Gly48ValfsTer14	p.G48Vfs*14	ENST00000264010	NM_006565.3	47	Ggg/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	21	558	0	ENST00000269305.4:c.815T>C	p.Val272Ala	p.V272A	ENST00000269305	NM_001126112.2	272	gTg/gCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	164	622	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
NF1	4763	MSKCC	GRCh37	17	29556991	29556991	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	20	104	0	ENST00000358273.4:c.2989A>G	p.Arg997Gly	p.R997G	ENST00000358273	NM_001042492.2	997	Agg/Ggg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212058	5212058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	120	610	0	ENST00000357368.4:c.4973C>T	p.Ala1658Val	p.A1658V	ENST00000357368	NM_002850.3	1658	gCa/gTa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	135	644	3	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229342	36229342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	116	528	0	ENST00000222270.7:c.8032C>T	p.Arg2678Cys	p.R2678C	ENST00000222270	NM_014727.1	2678	Cgc/Tgc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	89	378	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
CASP8	841	MSKCC	GRCh37	2	202149828	202149828	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	80	507	0	ENST00000358485.4:c.1269C>G	p.Asn423Lys	p.N423K	ENST00000358485	NM_001080125.1	423	aaC/aaG																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30956850	30956850	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	112	441	0	ENST00000375687.4:c.176T>C	p.Met59Thr	p.M59T	ENST00000375687	NM_015338.5	59	aTg/aCg																																																																														
NF2	4771	MSKCC	GRCh37	22	30069262	30069262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs996964764		P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	57	517	0	ENST00000338641.4:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000338641	NM_000268.3	376	cGg/cAg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933456	49933456	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	74	654	0	ENST00000296474.3:c.2734del	p.Asp912ThrfsTer24	p.D912Tfs*24	ENST00000296474	NM_002447.2	912	Gac/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	82	436	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928089	178928089	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	77	370	0	ENST00000263967.3:c.1367T>G	p.Leu456Arg	p.L456R	ENST00000263967	NM_006218.2	456	cTg/cGg																																																																														
BCL6	604	MSKCC	GRCh37	3	187446270	187446270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	125	604	0	ENST00000232014.4:c.1418del	p.Pro473ArgfsTer117	p.P473Rfs*117	ENST00000232014	NM_001130845.1	473	cCg/cg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79950775	79950775	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1200938359		P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	18	150	0	ENST00000265081.6:c.229C>T	p.Pro77Ser	p.P77S	ENST00000265081	NM_002439.4	77	Ccg/Tcg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163425	32163425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	146	605	0	ENST00000375023.3:c.5801A>G	p.Tyr1934Cys	p.Y1934C	ENST00000375023	NM_004557.3	1934	tAc/tGc																																																																														
SMO	6608	MSKCC	GRCh37	7	128849148	128849148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	142	582	1	ENST00000249373.3:c.1376C>T	p.Ala459Val	p.A459V	ENST00000249373	NM_005631.4	459	gCc/gTc																																																																														
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	93	387	0	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	132	666	0	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930311	39930311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	158	626	0	ENST00000378444.4:c.3153G>T	p.Trp1051Cys	p.W1051C	ENST00000378444	NM_001123385.1	1051	tgG/tgT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	340	622	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0044361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	216	339	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502187	157502187	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761227259		P-0044361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	259	509	1	ENST00000346085.5:c.3220G>A	p.Asp1074Asn	p.D1074N	ENST00000346085	NM_020732.3	1074	Gac/Aac																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872795	136872795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1272938495		P-0044361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	201	411	0	ENST00000241393.3:c.703C>T	p.Arg235Cys	p.R235C	ENST00000241393	NM_003467.2	235	Cgc/Tgc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239441	123239442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	172	488	0	ENST00000358487.5:c.2395dup	p.Ser799PhefsTer22	p.S799Ffs*22	ENST00000358487	NM_000141.4	799	tct/tTct																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346973	89346973	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773403872		P-0044361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	171	483	1	ENST00000301030.4:c.5977C>T	p.Arg1993Cys	p.R1993C	ENST00000301030	NM_001256183.1	1993	Cgt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032026	10032026	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	266	663	0	ENST00000330684.3:c.797A>C	p.Glu266Ala	p.E266A	ENST00000330684	NM_001134407.1	266	gAg/gCg																																																																														
TET2	54790	MSKCC	GRCh37	4	106196773	106196773	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	133	344	0	ENST00000380013.4:c.5106G>C	p.Gln1702His	p.Q1702H	ENST00000380013	NM_001127208.2	1702	caG/caC																																																																														
APC	324	MSKCC	GRCh37	5	112162894	112162895	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0044361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	15	209	0	ENST00000257430.4:c.1499dup	p.Tyr500Ter	p.Y500*	ENST00000257430	NM_000038.5	500	tat/tAat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	50	363	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	124	321	0				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49422645	49422645	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	259	513	0	ENST00000301067.7:c.14348C>G	p.Ser4783Ter	p.S4783*	ENST00000301067	NM_003482.3	4783	tCa/tGa																																																																														
CDK6	1021	MSKCC	GRCh37	7	92244546	92244546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	139	255	0	ENST00000265734.4:c.889C>T	p.His297Tyr	p.H297Y	ENST00000265734	NM_001259.6	297	Cac/Tac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151960110	151960110	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	143	350	0	ENST00000262189.6:c.1290G>C	p.Trp430Cys	p.W430C	ENST00000262189	NM_170606.2	430	tgG/tgC																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247361	153247367	+	protein_altering_variant	In_Frame_Del	DEL	CATCTCG	CATCTCG	A			P-0044417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	85	213	0	ENST00000281708.4:c.1435_1441delinsT	p.Arg479_Ala481delinsSer	p.R479_A481delinsS	ENST00000281708	NM_033632.3	479	CGAGATGcc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578241	7578241	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	326	692	0	ENST00000269305.4:c.608T>A	p.Val203Glu	p.V203E	ENST00000269305	NM_001126112.2	203	gTg/gAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590719	95590719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	163	294	0	ENST00000343455.3:c.1190G>C	p.Ser397Thr	p.S397T	ENST00000343455	NM_177438.2	397	aGc/aCc																																																																														
APC	324	MSKCC	GRCh37	5	112157592	112157593	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GT	GT	-			P-0044434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	166	353	0	ENST00000257430.4:c.1313_1314del		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																															
HIST1H3F	8968	MSKCC	GRCh37	6	26250462	26250462	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	282	545	0	ENST00000446824.2:c.372del	p.Asp124GlufsTer17	p.D124Efs*17	ENST00000446824	NM_021018.2	124	gaC/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	15	398	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	44	709	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913348		P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	40	437	0	ENST00000288602.6:c.1391G>T	p.Gly464Val	p.G464V	ENST00000288602	NM_004333.4	464	gGa/gTa																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308098	30308098	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1240513553		P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	66	605	0	ENST00000262643.3:c.235G>A	p.Asp79Asn	p.D79N	ENST00000262643	NM_001238.2	79	Gac/Aac																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952513	17952513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199815093		P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	70	796	1	ENST00000458235.1:c.920C>T	p.Pro307Leu	p.P307L	ENST00000458235	NM_000215.3	307	cCg/cTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112362	115112362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1440126149		P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	25	460	0	ENST00000257566.3:c.1378G>A	p.Glu460Lys	p.E460K	ENST00000257566	NM_016569.3	460	Gag/Aag																																																																														
RAD52	5893	MSKCC	GRCh37	12	1039044	1039044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	38	568	0	ENST00000358495.3:c.289G>C	p.Asp97His	p.D97H	ENST00000358495	NM_134424.2	97	Gac/Cac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5239023	5239023	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	74	820	0	ENST00000357368.4:c.1756C>G	p.Pro586Ala	p.P586A	ENST00000357368	NM_002850.3	586	Ccc/Gcc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627451	14627451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	42	626	0	ENST00000254322.2:c.619G>C	p.Glu207Gln	p.E207Q	ENST00000254322	NM_006145.1	207	Gaa/Caa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276203	15276203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	32	549	0	ENST00000263388.2:c.5791G>C	p.Asp1931His	p.D1931H	ENST00000263388	NM_000435.2	1931	Gat/Cat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224577	36224577	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	63	1029	0	ENST00000222270.7:c.7039G>C	p.Glu2347Gln	p.E2347Q	ENST00000222270	NM_014727.1	2347	Gaa/Caa																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139028	50139028	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769754956		P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	85	948	0	ENST00000246792.3:c.535G>A	p.Val179Met	p.V179M	ENST00000246792	NM_006270.3	179	Gtg/Atg																																																																														
SDHA	6389	MSKCC	GRCh37	5	256491	256491	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs375396913		P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	22	190	0	ENST00000264932.6:c.1951G>A	p.Glu651Lys	p.E651K	ENST00000264932	NM_004168.2	651	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874008	151874008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	32	491	0	ENST00000262189.6:c.8530G>A	p.Glu2844Lys	p.E2844K	ENST00000262189	NM_170606.2	2844	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0044450-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	133	456	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448693	49448693	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044450-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	144	335	1	ENST00000301067.7:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000301067	NM_003482.3	56	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579444	7579444	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044450-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	229	611	0	ENST00000269305.4:c.243del	p.Pro82ArgfsTer41	p.P82Rfs*41	ENST00000269305	NM_001126112.2	81	acA/ac																																																																														
BLM	641	MSKCC	GRCh37	15	91290721	91290721	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs750293380		P-0044450-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	57	213	0	ENST00000355112.3:c.98+1G>A		p.X33_splice	ENST00000355112	NM_000057.2	33																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786204864		P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	91	476	2	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551682	150551682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	34	591	0	ENST00000369026.2:c.325G>A	p.Glu109Lys	p.E109K	ENST00000369026	NM_021960.4	109	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7573991	7573991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	127	1029	0	ENST00000269305.4:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	346	Gag/Tag																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056594	26056594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	24	325	0	ENST00000343677.2:c.63G>T	p.Lys21Asn	p.K21N	ENST00000343677	NM_005319.3	21	aaG/aaT																																																																														
MGA	23269	MSKCC	GRCh37	15	41988452	41988452	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	51	603	0	ENST00000219905.7:c.1244C>G	p.Ser415Ter	p.S415*	ENST00000219905	NM_001164273.1	415	tCa/tGa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118366981	118366981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	33	541	0	ENST00000534358.1:c.5563G>C	p.Asp1855His	p.D1855H	ENST00000534358	NM_005933.3	1855	Gat/Cat																																																																														
RARA	5914	MSKCC	GRCh37	17	38512308	38512308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	114	1127	0	ENST00000254066.5:c.1219C>T	p.Pro407Ser	p.P407S	ENST00000254066	NM_000964.3	407	Ccg/Tcg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028656	12028656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	60	511	0	ENST00000353533.5:c.859C>T	p.Arg287Cys	p.R287C	ENST00000353533	NM_003010.3	287	Cgc/Tgc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982957	201982957	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs374568591		P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	45	890	0	ENST00000359651.3:c.806C>T	p.Ala269Val	p.A269V	ENST00000359651		269	gCg/gTg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3121069	3121069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	89	1038	0	ENST00000078429.4:c.972C>G	p.Ile324Met	p.I324M	ENST00000078429	NM_002067.2	324	atC/atG																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11137003	11137013	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGGCGGCAT	ACTGGCGGCAT	-			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	78	872	1	ENST00000344626.4:c.3196_3206del	p.Thr1066CysfsTer12	p.T1066Cfs*12	ENST00000344626	NM_003072.3	1066	ACTGGCGGCATt/t																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439262	52439263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTGGGATGGGGCT			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	54	918	0	ENST00000460680.1:c.966_979dup	p.Ser327LysfsTer13	p.S327Kfs*13	ENST00000460680	NM_004656.3	327	agc/aAGCCCCATCCCACAgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947127	178947127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	26	447	0	ENST00000263967.3:c.2563C>G	p.His855Asp	p.H855D	ENST00000263967	NM_006218.2	855	Cac/Gac																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839836	27839836	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs963972613		P-0044465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	78	835	0	ENST00000328488.2:c.258G>C	p.Gln86His	p.Q86H	ENST00000328488	NM_003533.2	86	caG/caC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	94	515	3	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115277064	115277064	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	29	443	0	ENST00000438362.2:c.719A>C	p.Lys240Thr	p.K240T	ENST00000438362	NM_001242891.1	240	aAg/aCg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120491175	120491175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	113	534	0	ENST00000256646.2:c.2614A>G	p.Ile872Val	p.I872V	ENST00000256646	NM_024408.3	872	Att/Gtt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577419	64577419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	90	750	3	ENST00000337652.1:c.163C>A	p.Pro55Thr	p.P55T	ENST00000337652	NM_130803.2	55	Cct/Act																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589633	69589633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	56	272	0	ENST00000168712.1:c.220G>T	p.Gly74Cys	p.G74C	ENST00000168712	NM_002007.2	74	Ggc/Tgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	139	971	3	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	431718	431718	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747207978		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	91	339	0	ENST00000399788.2:c.2291G>A	p.Arg764Gln	p.R764Q	ENST00000399788	NM_001042603.1	764	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415622	49415622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	120	445	0	ENST00000301067.7:c.16555G>A	p.Asp5519Asn	p.D5519N	ENST00000301067	NM_003482.3	5519	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420625	49420625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	217	674	0	ENST00000301067.7:c.15124del	p.Ala5042ProfsTer9	p.A5042Pfs*9	ENST00000301067	NM_003482.3	5042	Gcc/cc																																																																														
RAB35	11021	MSKCC	GRCh37	12	120541645	120541645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	112	607	0	ENST00000229340.5:c.212G>A	p.Arg71His	p.R71H	ENST00000229340	NM_006861.6	71	cGc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133248830	133248830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	133	732	1	ENST00000320574.5:c.1765C>T	p.Pro589Ser	p.P589S	ENST00000320574	NM_006231.2	589	Cct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907364	32907365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	27	325	0	ENST00000380152.3:c.1754dup	p.Lys586GlufsTer4	p.K586Efs*4	ENST00000380152		583	-/A																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930634	32930634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56070345		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	61	460	0	ENST00000380152.3:c.7505G>A	p.Arg2502His	p.R2502H	ENST00000380152		2502	cGc/cAc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762174	43762174	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs776812022		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	157	744	0	ENST00000382044.4:c.1271A>C	p.Asn424Thr	p.N424T	ENST00000382044	NM_001141980.1	424	aAc/aCc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	93	427	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274171	10274171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	81	582	0	ENST00000330684.3:c.98C>A	p.Ala33Glu	p.A33E	ENST00000330684	NM_001134407.1	33	gCg/gAg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50815168	50815168	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	90	499	0	ENST00000398568.2:c.1521T>G	p.Cys507Trp	p.C507W	ENST00000398568	NM_001042412.1	507	tgT/tgG																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81914545	81914545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769793664		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	55	447	0	ENST00000359376.3:c.679G>A	p.Val227Met	p.V227M	ENST00000359376	NM_002661.3	227	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578397	7578397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	148	715	0	ENST00000269305.4:c.533A>C	p.His178Pro	p.H178P	ENST00000269305	NM_001126112.2	178	cAc/cCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138729528		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	142	745	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118344	17118344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	159	859	0	ENST00000285071.4:c.1493A>G	p.Asp498Gly	p.D498G	ENST00000285071	NM_144997.5	498	gAt/gGt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231333	5231333	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	121	634	0	ENST00000357368.4:c.2143A>G	p.Thr715Ala	p.T715A	ENST00000357368	NM_002850.3	715	Acc/Gcc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308338	30308338	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	78	482	0	ENST00000262643.3:c.352A>T	p.Lys118Ter	p.K118*	ENST00000262643	NM_001238.2	118	Aaa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	159	922	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907707	111907707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757046249		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	72	390	2	ENST00000393256.3:c.481G>A	p.Ala161Thr	p.A161T	ENST00000393256	NM_006538.4	161	Gct/Act																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128030506	128030506	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1313043237		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	78	510	0	ENST00000285398.2:c.1762del	p.Glu588LysfsTer23	p.E588Kfs*23	ENST00000285398	NM_000122.1	588	Gaa/aa																																																																														
CASP8	841	MSKCC	GRCh37	2	202137404	202137404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	47	363	0	ENST00000358485.4:c.632T>C	p.Leu211Pro	p.L211P	ENST00000358485	NM_001080125.1	211	cTg/cCg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660476	227660476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	89	630	0	ENST00000305123.5:c.2979G>T	p.Gln993His	p.Q993H	ENST00000305123	NM_005544.2	993	caG/caT																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31372633	31372633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149520896		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	105	653	2	ENST00000328111.2:c.274C>T	p.Arg92Trp	p.R92W	ENST00000328111	NM_006892.3	92	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770625	40770625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	29	423	0	ENST00000373198.4:c.2757G>T	p.Gln919His	p.Q919H	ENST00000373198	NM_133170.3	919	caG/caT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100998	41100998	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772057709		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	98	658	0	ENST00000373198.4:c.1358G>A	p.Arg453His	p.R453H	ENST00000373198	NM_133170.3	453	cGc/cAc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29115459	29115460	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	23	103	0	ENST00000328354.6:c.606dup	p.Asp203Ter	p.D203*	ENST00000328354	NM_007194.3	202	-/T																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	29	350	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
EP300	2033	MSKCC	GRCh37	22	41568501	41568501	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	18	226	0	ENST00000263253.7:c.4453-2A>T		p.X1485_splice	ENST00000263253	NM_001429.3	1485																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30691775	30691775	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs766473954		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	66	424	0	ENST00000359013.4:c.352G>A	p.Glu118Lys	p.E118K	ENST00000359013	NM_001024847.2	118	Gag/Aag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125462	47125462	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	52	385	0	ENST00000409792.3:c.5808C>A	p.Cys1936Ter	p.C1936*	ENST00000409792	NM_014159.6	1936	tgC/tgA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125698	47125698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	70	488	0	ENST00000409792.3:c.5572C>T	p.Pro1858Ser	p.P1858S	ENST00000409792	NM_014159.6	1858	Cct/Tct																																																																														
BCL6	604	MSKCC	GRCh37	3	187451405	187451405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	94	512	1	ENST00000232014.4:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000232014	NM_001130845.1	26	cGg/cAg																																																																														
KDR	3791	MSKCC	GRCh37	4	55955593	55955593	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs373654225		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	33	349	0	ENST00000263923.4:c.3352C>T	p.Arg1118Ter	p.R1118*	ENST00000263923	NM_002253.2	1118	Cga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55955962	55955962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	54	406	0	ENST00000263923.4:c.3200T>C	p.Leu1067Pro	p.L1067P	ENST00000263923	NM_002253.2	1067	cTc/cCc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244155	153244156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	82	562	0	ENST00000281708.4:c.2001dup	p.Ser668GlufsTer26	p.S668Efs*26	ENST00000281708	NM_033632.3	667	-/G																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	94	349	2	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	19	73	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	17	250	1	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	49	264	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	28	164	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497299	149497299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142762235		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	128	756	0	ENST00000261799.4:c.3019G>A	p.Val1007Ile	p.V1007I	ENST00000261799	NM_002609.3	1007	Gtc/Atc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	67	346	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190344	32190344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146490163		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	93	691	2	ENST00000375023.3:c.395G>A	p.Arg132His	p.R132H	ENST00000375023	NM_004557.3	132	cGc/cAc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651913	36651914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	99	669	0	ENST00000244741.5:c.36dup	p.Cys13MetfsTer23	p.C13Mfs*23	ENST00000244741	NM_000389.4	12	cca/ccAa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554315	106554315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1400919125		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	87	463	0	ENST00000369096.4:c.1843C>T	p.Leu615Phe	p.L615F	ENST00000369096	NM_001198.3	615	Ctc/Ttc																																																																														
HGF	3082	MSKCC	GRCh37	7	81335047	81335048	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	27	321	0	ENST00000222390.5:c.1779dup	p.Val594CysfsTer2	p.V594Cfs*2	ENST00000222390	NM_000601.4	593	-/T																																																																														
CDK6	1021	MSKCC	GRCh37	7	92355046	92355046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	31	334	0	ENST00000265734.4:c.431G>A	p.Arg144His	p.R144H	ENST00000265734	NM_001259.6	144	cGc/cAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	38	332	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370706	55370706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	102	582	0	ENST00000297316.4:c.8G>T	p.Ser3Ile	p.S3I	ENST00000297316	NM_022454.3	3	aGc/aTc																																																																														
SYK	6850	MSKCC	GRCh37	9	93606403	93606403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs570398843		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	133	672	0	ENST00000375746.1:c.223G>A	p.Ala75Thr	p.A75T	ENST00000375746	NM_001174167.1	75	Gcc/Acc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760523	133760523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	145	851	1	ENST00000318560.5:c.2846G>T	p.Ser949Ile	p.S949I	ENST00000318560	NM_005157.4	949	aGc/aTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399315	139399315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs369467132		P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	166	895	0	ENST00000277541.6:c.4828G>A	p.Ala1610Thr	p.A1610T	ENST00000277541	NM_017617.3	1610	Gca/Aca																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841268	15841268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	91	475	0	ENST00000307771.7:c.1352G>A	p.Arg451His	p.R451H	ENST00000307771	NM_005089.3	451	cGc/cAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932958	39932959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	102	699	0	ENST00000378444.4:c.1640dup	p.Met547IlefsTer10	p.M547Ifs*10	ENST00000378444	NM_001123385.1	547	atg/atTg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426438	47426438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	94	691	2	ENST00000377045.4:c.781G>T	p.Ala261Ser	p.A261S	ENST00000377045	NM_001654.4	261	Gcc/Tcc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937879	76937880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	42	333	0	ENST00000373344.5:c.2868dup	p.Val957SerfsTer7	p.V957Sfs*7	ENST00000373344	NM_000489.3	956	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	93	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578245	7578610	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAAATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAA	GCAAATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAA	-			P-0044659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	151	714	0	ENST00000269305.4:c.376-56_604del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
KDR	3791	MSKCC	GRCh37	4	55968660	55968660	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199774865		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	109	429	0	ENST00000263923.4:c.2003C>T	p.Thr668Met	p.T668M	ENST00000263923	NM_002253.2	668	aCg/aTg																																																																														
ERG	2078	MSKCC	GRCh37	21	39817412	39817412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200306085		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	163	506	1	ENST00000288319.7:c.151G>A	p.Val51Ile	p.V51I	ENST00000288319	NM_182918.3	51	Gtc/Atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	66	397	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	22	201	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662023	227662023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776903727		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	168	603	2	ENST00000305123.5:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000305123	NM_005544.2	478	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107096	27107096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	158	472	0	ENST00000324856.7:c.6707G>C	p.Arg2236Pro	p.R2236P	ENST00000324856	NM_006015.4	2236	cGc/cCc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	146	415	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781375	3781375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	292	732	0	ENST00000262367.5:c.4990C>T	p.Arg1664Cys	p.R1664C	ENST00000262367	NM_004380.2	1664	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289952	15289952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778635935		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	305	815	1	ENST00000263388.2:c.3602G>A	p.Arg1201His	p.R1201H	ENST00000263388	NM_000435.2	1201	cGc/cAc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	135	509	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027676	48027678	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1377809071		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	50	247	0	ENST00000234420.5:c.2561_2563del	p.Lys854del	p.K854del	ENST00000234420	NM_000179.2	852	AAG/-																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87563461	87563461	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1211018594		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	178	498	0	ENST00000277120.3:c.1849G>A	p.Val617Ile	p.V617I	ENST00000277120		617	Gtc/Atc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	102	476	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435692	56435692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	247	558	1	ENST00000407977.2:c.1445G>A	p.Cys482Tyr	p.C482Y	ENST00000407977		482	tGc/tAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349640	89349641	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs772267579		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	225	716	12	ENST00000301030.4:c.3309dup	p.Asp1104ArgfsTer2	p.D1104Rfs*2	ENST00000301030	NM_001256183.1	1103	-/A																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	155	544	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935635	49935635	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	254	604	0	ENST00000296474.3:c.1729del	p.His577ThrfsTer5	p.H577Tfs*5	ENST00000296474	NM_002447.2	577	Cac/ac																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926960	112926960	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770363146		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	122	443	0	ENST00000351677.2:c.1580G>A	p.Arg527His	p.R527H	ENST00000351677	NM_002834.3	527	cGc/cAc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204618	128204618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	264	732	0	ENST00000341105.2:c.823G>A	p.Ala275Thr	p.A275T	ENST00000341105	NM_032638.4	275	Gcc/Acc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571498	95571498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	117	374	0	ENST00000343455.3:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000343455	NM_177438.2	1060	cGc/cAc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158637068	158637069	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-	rs141073095		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	66	554	2	ENST00000263640.3:c.111_112del	p.Cys37Ter	p.C37*	ENST00000263640	NM_001105.4	37	tgTGaa/tgaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123752	11123752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	209	546	0	ENST00000344626.4:c.2402G>A	p.Arg801His	p.R801H	ENST00000344626	NM_003072.3	801	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779308	3779308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760771706		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	202	590	0	ENST00000262367.5:c.5740G>A	p.Val1914Met	p.V1914M	ENST00000262367	NM_004380.2	1914	Gtg/Atg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911487	131911487	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876658808		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	47	244	0	ENST00000265335.6:c.232G>A	p.Val78Met	p.V78M	ENST00000265335		78	Gtg/Atg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198272802	198272802	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745511585		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	66	446	1	ENST00000335508.6:c.1159C>T	p.Arg387Trp	p.R387W	ENST00000335508	NM_012433.2	387	Cgg/Tgg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9778909	9778909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1048477125		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	256	661	0	ENST00000377346.4:c.1178C>T	p.Ala393Val	p.A393V	ENST00000377346	NM_005026.3	393	gCg/gTg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245927393	245927393	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs778849787		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	34	446	1	ENST00000388985.4:c.1135C>G	p.Leu379Val	p.L379V	ENST00000388985		379	Ctg/Gtg																																																																														
ATM	472	MSKCC	GRCh37	11	108150333	108150333	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	22	227	0	ENST00000278616.4:c.3400A>G	p.Met1134Val	p.M1134V	ENST00000278616	NM_000051.3	1134	Atg/Gtg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	364671	364671	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	254	620	0	ENST00000262320.3:c.891G>A	p.Trp297Ter	p.W297*	ENST00000262320	NM_003502.3	297	tgG/tgA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822111	72822111	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	114	489	0	ENST00000268489.5:c.10064T>C	p.Leu3355Pro	p.L3355P	ENST00000268489	NM_006885.3	3355	cTg/cCg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207046	1207046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	65	761	1	ENST00000326873.7:c.134T>C	p.Leu45Pro	p.L45P	ENST00000326873	NM_000455.4	45	cTc/cCc																																																																														
INSR	3643	MSKCC	GRCh37	19	7167988	7167988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	166	479	0	ENST00000302850.5:c.1601A>G	p.Tyr534Cys	p.Y534C	ENST00000302850	NM_000208.2	534	tAc/tGc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284996	15284996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1472208548		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	99	779	0	ENST00000263388.2:c.4619G>A	p.Arg1540His	p.R1540H	ENST00000263388	NM_000435.2	1540	cGc/cAc																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881664	111881664	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	255	577	0	ENST00000393256.3:c.342del	p.Gln115LysfsTer20	p.Q115Kfs*20	ENST00000393256	NM_006538.4	114	acA/ac																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169981187	169981187	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368704903		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	86	406	0	ENST00000295797.4:c.334C>T	p.Arg112Cys	p.R112C	ENST00000295797	NM_002740.5	112	Cgt/Tgt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673517	30673517	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1463478715		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	233	706	0	ENST00000376406.3:c.3443G>A	p.Ser1148Asn	p.S1148N	ENST00000376406	NM_014641.2	1148	aGc/aAc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322955	31322955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	244	824	0	ENST00000412585.2:c.941G>A	p.Gly314Asp	p.G314D	ENST00000412585	NM_005514.6	314	gGc/gAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099301	157099301	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	202	380	0	ENST00000346085.5:c.241del	p.His81ThrfsTer30	p.H81Tfs*30	ENST00000346085	NM_020732.3	80	Ccc/cc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148515097	148515097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	165	416	0	ENST00000320356.2:c.1112G>A	p.Ser371Asn	p.S371N	ENST00000320356	NM_004456.4	371	aGc/aAc																																																																														
PAX5	5079	MSKCC	GRCh37	9	36882024	36882024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1323551948		P-0044666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	278	725	0	ENST00000358127.4:c.989C>T	p.Pro330Leu	p.P330L	ENST00000358127	NM_001280556.1	330	cCg/cTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261434	16261434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	105	647	0	ENST00000375759.3:c.8699C>T	p.Ser2900Leu	p.S2900L	ENST00000375759	NM_015001.2	2900	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912664		P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	98	758	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs11554290		P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	133	529	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	46	353	0	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066618	94066618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	70	477	0	ENST00000369303.4:c.1141C>T	p.Pro381Ser	p.P381S	ENST00000369303	NM_004440.3	381	Ccc/Tcc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683852	117683852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	38	312	0	ENST00000368508.3:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000368508	NM_002944.2	1099	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295230	+	upstream_gene_variant	5'Flank	ONP	GGG	GGG	AAA			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	35	449	1				ENST00000310581	NM_198253.2																																																																																
ERF	2077	MSKCC	GRCh37	19	42752724	42752724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs764618715		P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	142	861	1	ENST00000222329.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000222329	NM_006494.2	514	Cgt/Tgt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972744	25972744	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1348431069		P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	87	436	0	ENST00000435504.4:c.1681C>T	p.Gln561Ter	p.Q561*	ENST00000435504		561	Cag/Tag																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458559	12458559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	81	677	0	ENST00000287820.6:c.1176G>A	p.Met392Ile	p.M392I	ENST00000287820	NM_015869.4	392	atG/atA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374685	118374685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	48	427	0	ENST00000534358.1:c.8078C>T	p.Ser2693Phe	p.S2693F	ENST00000534358	NM_005933.3	2693	tCt/tTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686270	117686270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	36	295	0	ENST00000368508.3:c.3071G>A	p.Trp1024Ter	p.W1024*	ENST00000368508	NM_002944.2	1024	tGg/tAg																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695759	117695759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	66	354	0	ENST00000369458.3:c.678G>A	p.Met226Ile	p.M226I	ENST00000369458	NM_024626.3	226	atG/atA																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206647681	206647681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	28	518	0	ENST00000367120.3:c.95G>A	p.Gly32Glu	p.G32E	ENST00000367120	NM_014002.3	32	gGa/gAa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63760006	63760006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	62	396	0	ENST00000279873.7:c.659C>T	p.Pro220Leu	p.P220L	ENST00000279873	NM_032199.2	220	cCt/cTt																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156623	2156623	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	95	752	1	ENST00000434045.2:c.299T>A	p.Val100Asp	p.V100D	ENST00000434045	NM_001127598.1	100	gTc/gAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118770	115118770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	114	549	0	ENST00000257566.3:c.571C>T	p.Pro191Ser	p.P191S	ENST00000257566	NM_016569.3	191	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923417	9923417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	84	673	0	ENST00000330684.3:c.1870G>A	p.Gly624Arg	p.G624R	ENST00000330684	NM_001134407.1	624	Ggg/Agg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604664	48604664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397518413		P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	54	342	0	ENST00000342988.3:c.1486C>T	p.Arg496Cys	p.R496C	ENST00000342988	NM_005359.5	496	Cgt/Tgt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367243	50367243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	32	340	1	ENST00000331340.3:c.50G>A	p.Ser17Asn	p.S17N	ENST00000331340	NM_006060.4	17	aGc/aAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55270316	55270316	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	205	853	3	ENST00000275493.2:c.3269C>T	p.Pro1090Leu	p.P1090L	ENST00000275493	NM_005228.3	1090	cCt/cTt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741433	145741433	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	92	1079	0	ENST00000428558.2:c.1070A>T	p.Asn357Ile	p.N357I	ENST00000428558	NM_004260.3	357	aAc/aTc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	46	377	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	31	293	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	78	453	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1181132297		P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	18	328	0	ENST00000342505.4:c.1016del	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589589	67589591	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	26	156	0	ENST00000274335.5:c.1353_1355del	p.Glu451_Tyr452delinsAsp	p.E451_Y452delinsD	ENST00000274335		451	gAATat/gat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs757302188		P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	69	566	3	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588164	67588164	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	61	300	0	ENST00000274335.5:c.994G>T	p.Glu332Ter	p.E332*	ENST00000274335		332	Gaa/Taa																																																																														
TET1	80312	MSKCC	GRCh37	10	70451150	70451150	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs564186545		P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	85	650	0	ENST00000373644.4:c.5990G>A	p.Ser1997Asn	p.S1997N	ENST00000373644	NM_030625.2	1997	aGt/aAt																																																																														
CCND1	595	MSKCC	GRCh37	11	69466022	69466023	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACCGA			P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	179	783	0	ENST00000227507.2:c.862_867dup	p.Thr288_Asp289dup	p.T288_D289dup	ENST00000227507	NM_053056.2	288	ccc/ccCACCGAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491484	18491484	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	12	230	0	ENST00000266497.5:c.1395+2T>A		p.X465_splice	ENST00000266497		465																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426634	49426634	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	165	549	0	ENST00000301067.7:c.11854C>T	p.Gln3952Ter	p.Q3952*	ENST00000301067	NM_003482.3	3952	Caa/Taa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438146	110438147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	143	417	0	ENST00000375856.3:c.254dup	p.Ala86GlyfsTer111	p.A86Gfs*111	ENST00000375856	NM_003749.2	85	aag/aaAg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645891	67645891	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	128	535	1	ENST00000264010.4:c.819C>A	p.Tyr273Ter	p.Y273*	ENST00000264010	NM_006565.3	273	taC/taA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984378	72984378	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	143	554	0	ENST00000268489.5:c.3206A>G	p.Lys1069Arg	p.K1069R	ENST00000268489	NM_006885.3	1069	aAg/aGg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89825093	89825093	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1374262828		P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	145	477	1	ENST00000389301.3:c.2873C>T	p.Ala958Val	p.A958V	ENST00000389301	NM_000135.2	958	gCg/gTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437565	52437565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	194	712	0	ENST00000460680.1:c.1596del	p.Phe532LeufsTer39	p.F532Lfs*39	ENST00000460680	NM_004656.3	532	ttT/tt																																																																														
XIAP	331	MSKCC	GRCh37	X	123019961	123019961	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	89	638	0	ENST00000355640.3:c.449C>A	p.Ser150Ter	p.S150*	ENST00000355640		150	tCa/tAa																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858050	152858050	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	113	606	0	ENST00000406277.2:c.565A>T	p.Ile189Phe	p.I189F	ENST00000406277	NM_152274.4	189	Atc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	54	316	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	84	423	0	ENST00000342988.3:c.1572G>C	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs1202793339		P-0044779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	202	559	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100514	8100514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201023943		P-0044779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	107	732	2	ENST00000346208.3:c.488C>T	p.Pro163Leu	p.P163L	ENST00000346208		163	cCg/cTg																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158588	26158588	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1415465556		P-0044779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	69	417	0	ENST00000289316.2:c.191A>G	p.Asn64Ser	p.N64S	ENST00000289316	NM_138720.2	64	aAt/aGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	106	312	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	141	480	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	355	622	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209721	98209721	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749244396		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	146	647	0	ENST00000331920.6:c.3817G>A	p.Glu1273Lys	p.E1273K	ENST00000331920	NM_000264.3	1273	Gaa/Aaa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	379	673	8	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs750808726		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	150	745	2	ENST00000261937.6:c.1267dup	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044348	128044348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913047		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	158	550	0	ENST00000285398.2:c.1273C>T	p.Arg425Ter	p.R425*	ENST00000285398	NM_000122.1	425	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	148	503	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521103	187521103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183364307		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	144	421	1	ENST00000441802.2:c.12052G>A	p.Ala4018Thr	p.A4018T	ENST00000441802	NM_005245.3	4018	Gcc/Acc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs758630849		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	112	451	0	ENST00000305921.3:c.1349del	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	100	297	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	128	471	1	ENST00000268489.5:c.5677_5678del	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260058	19260058	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143400241		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	194	647	3	ENST00000162023.5:c.235C>T	p.Arg79Cys	p.R79C	ENST00000162023		79	Cgc/Tgc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120258	70120259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	210	540	1	ENST00000245479.2:c.1261dup	p.Ser421LysfsTer157	p.S421Kfs*157	ENST00000245479	NM_000346.3	420	-/A																																																																														
TET2	54790	MSKCC	GRCh37	4	106155779	106155779	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	96	377	0	ENST00000380013.4:c.685del	p.Thr229HisfsTer21	p.T229Hfs*21	ENST00000380013	NM_001127208.2	227	gAa/ga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105676	27105678	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs760362729		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	89	319	0	ENST00000324856.7:c.5299_5301del	p.Glu1767del	p.E1767del	ENST00000324856	NM_006015.4	1763	GAA/-																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	141	459	5	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686961	37686962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	123	468	0	ENST00000447079.4:c.3871dup	p.Gln1291ProfsTer19	p.Q1291Pfs*19	ENST00000447079	NM_015083.1	1289	gcc/gCcc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288788	15288789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	52	99	0	ENST00000263388.2:c.3950dup	p.Gly1318ArgfsTer245	p.G1318Rfs*245	ENST00000263388	NM_000435.2	1317	cca/ccCa																																																																														
MSI1	4440	MSKCC	GRCh37	12	120794732	120794732	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1276733276		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	205	669	1	ENST00000257552.2:c.625G>A	p.Ala209Thr	p.A209T	ENST00000257552	NM_002442.3	209	Gcc/Acc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	262	426	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880988	37880988	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772054394		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	205	655	0	ENST00000269571.5:c.2317G>A	p.Val773Met	p.V773M	ENST00000269571		773	Gtg/Atg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	80	364	3	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	169	381	0	ENST00000304494.5:c.319C>T	p.Arg107Cys	p.R107C	ENST00000304494	NM_000077.4	107	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	169	381	0	ENST00000304494.5:c.319C>T	p.Arg107Cys	p.R107C	ENST00000304494	NM_000077.4	107	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	169	381	0	ENST00000304494.5:c.319C>T	p.Arg107Cys	p.R107C	ENST00000304494	NM_000077.4	107	Cgc/Tgc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	162	493	3	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38184289	38184289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149768452		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	93	436	1	ENST00000317025.8:c.1667C>T	p.Thr556Met	p.T556M	ENST00000317025	NM_023034.1	556	aCg/aTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819239	3819239	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772991403		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	154	472	2	ENST00000262367.5:c.2996C>T	p.Thr999Met	p.T999M	ENST00000262367	NM_004380.2	999	aCg/aTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5240233	5240233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202189767		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	199	685	0	ENST00000357368.4:c.1681C>T	p.Arg561Trp	p.R561W	ENST00000357368	NM_002850.3	561	Cgg/Tgg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022747	12022747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs376242225		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	115	456	1	ENST00000396373.4:c.853G>A	p.Val285Met	p.V285M	ENST00000396373	NM_001987.4	285	Gtg/Atg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	175	681	5	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851274	156851274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	185	686	0	ENST00000524377.1:c.2231G>C	p.Arg744Pro	p.R744P	ENST00000524377	NM_002529.3	744	cGt/cCt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430228	181430228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	138	358	0	ENST00000325404.1:c.80C>T	p.Ala27Val	p.A27V	ENST00000325404	NM_003106.3	27	gCg/gTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39002716	39002716	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	112	288	1	ENST00000357387.3:c.313C>T	p.Arg105Ter	p.R105*	ENST00000357387	NM_152756.3	105	Cga/Tga																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797891	45797891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840380		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	184	676	0	ENST00000372115.3:c.838C>T	p.Arg280Cys	p.R280C	ENST00000372115	NM_001048171.1	280	Cgc/Tgc																																																																														
TEK	7010	MSKCC	GRCh37	9	27169499	27169499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs573385848		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	114	392	0	ENST00000380036.4:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000380036	NM_000459.3	167	cGg/cAg																																																																														
PARP1	142	MSKCC	GRCh37	1	226555267	226555267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	139	430	0	ENST00000366794.5:c.2320G>A	p.Ala774Thr	p.A774T	ENST00000366794	NM_001618.3	774	Gcc/Acc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522532	67522532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767837787		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	70	168	0	ENST00000274335.5:c.29C>T	p.Ala10Val	p.A10V	ENST00000274335		10	gCg/gTg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664771	138664771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	86	179	1	ENST00000330315.3:c.794C>T	p.Ala265Val	p.A265V	ENST00000330315	NM_023067.3	265	gCg/gTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244190	5244190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs760369713		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	207	709	0	ENST00000357368.4:c.1292G>A	p.Arg431Gln	p.R431Q	ENST00000357368	NM_002850.3	431	cGg/cAg																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551958	150551958	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs932863734		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	152	447	1	ENST00000369026.2:c.49G>A	p.Gly17Arg	p.G17R	ENST00000369026	NM_021960.4	17	Ggg/Agg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982113	201982113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751933012		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	184	623	0	ENST00000359651.3:c.637G>A	p.Gly213Ser	p.G213S	ENST00000359651		213	Ggt/Agt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942606	71942606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769074650		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	156	553	0	ENST00000298229.2:c.1562G>A	p.Arg521His	p.R521H	ENST00000298229	NM_001567.3	521	cGt/cAt																																																																														
PGR	5241	MSKCC	GRCh37	11	100920719	100920719	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	79	361	0	ENST00000325455.5:c.2429A>G	p.Lys810Arg	p.K810R	ENST00000325455	NM_001202474.3	810	aAg/aGg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285675	46285675	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1201192337		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	45	306	0	ENST00000334344.6:c.5035C>T	p.Arg1679Trp	p.R1679W	ENST00000334344	NM_152641.2	1679	Cgg/Tgg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856326	111856326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	19	59	1	ENST00000341259.2:c.377C>T	p.Pro126Leu	p.P126L	ENST00000341259	NM_005475.2	126	cCg/cTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562948	21562948	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	200	626	0	ENST00000382592.4:c.971del	p.Ala324GlyfsTer109	p.A324Gfs*109	ENST00000382592	NM_014572.2	324	gCg/gg																																																																														
RB1	5925	MSKCC	GRCh37	13	49039197	49039198	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCTTCA			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	121	418	0	ENST00000267163.4:c.2277_2282dup	p.Phe760_Met761insIlePhe	p.F760_M761insIF	ENST00000267163	NM_000321.2	759	gtc/gTCTTCAtc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423638	88423638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	99	339	0	ENST00000360948.2:c.2197C>A	p.Pro733Thr	p.P733T	ENST00000360948	NM_001012338.2	733	Ccc/Acc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134690	2134691	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	383	681	0	ENST00000219476.3:c.4470_4471del	p.Lys1491SerfsTer32	p.K1491Sfs*32	ENST00000219476	NM_000548.3	1489	gcAGag/gcag																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020487	14020487	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913050		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	93	367	0	ENST00000311895.7:c.458G>A	p.Arg153His	p.R153H	ENST00000311895	NM_005236.2	153	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821368	72821368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1458446159		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	82	261	0	ENST00000268489.5:c.10807G>A	p.Ala3603Thr	p.A3603T	ENST00000268489	NM_006885.3	3603	Gcc/Acc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118551	17118552	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-	rs1064793128		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	159	605	0	ENST00000285071.4:c.1379_1380del	p.Leu460GlnfsTer25	p.L460Qfs*25	ENST00000285071	NM_144997.5	460	cTC/c																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216310	2216310	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780465036		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	168	566	1	ENST00000398665.3:c.1954C>T	p.Arg652Trp	p.R652W	ENST00000398665	NM_032482.2	652	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231461	5231461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	198	636	0	ENST00000357368.4:c.2015A>G	p.Asn672Ser	p.N672S	ENST00000357368	NM_002850.3	672	aAc/aGc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289889	15289889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	222	756	0	ENST00000263388.2:c.3665G>A	p.Cys1222Tyr	p.C1222Y	ENST00000263388	NM_000435.2	1222	tGc/tAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918193	50918194	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	184	717	0	ENST00000440232.2:c.2515dup	p.Leu839ProfsTer20	p.L839Pfs*20	ENST00000440232	NM_002691.3	837	tgc/tgCc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374318	31374318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	124	558	1	ENST00000328111.2:c.317G>T	p.Arg106Leu	p.R106L	ENST00000328111	NM_006892.3	106	cGa/cTa																																																																														
ATR	545	MSKCC	GRCh37	3	142279201	142279201	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	100	351	1	ENST00000350721.4:c.1445T>C	p.Leu482Pro	p.L482P	ENST00000350721	NM_001184.3	482	cTa/cCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951992	178951992	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	190	373	0	ENST00000263967.3:c.3047T>C	p.Phe1016Ser	p.F1016S	ENST00000263967	NM_006218.2	1016	tTt/tCt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562867	176562867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	147	430	0	ENST00000439151.2:c.763C>T	p.Pro255Ser	p.P255S	ENST00000439151	NM_022455.4	255	Cca/Tca																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323351	31323351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	79	250	0	ENST00000412585.2:c.638T>C	p.Val213Ala	p.V213A	ENST00000412585	NM_005514.6	213	gTg/gCg																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748570	43748570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	146	379	0	ENST00000523873.1:c.524C>A	p.Pro175His	p.P175H	ENST00000523873		175	cCc/cAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509318	106509318	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs772698550		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	156	504	0	ENST00000359195.3:c.1312G>T	p.Ala438Ser	p.A438S	ENST00000359195	NM_002649.2	438	Gct/Tct																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1325439	1325439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1391352722		P-0044791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	130	452	0	ENST00000381566.1:c.236G>A	p.Gly79Asp	p.G79D	ENST00000381566		79	gGt/gAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133245277	133245277	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	149	756	0	ENST00000320574.5:c.1970A>C	p.Asn657Thr	p.N657T	ENST00000320574	NM_006231.2	657	aAt/aCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	68	359	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587778720		P-0044832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	219	689	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281250	15281250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1184522923		P-0044832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	287	999	1	ENST00000263388.2:c.5006G>A	p.Arg1669His	p.R1669H	ENST00000263388	NM_000435.2	1669	cGc/cAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602836	10602836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	282	869	0	ENST00000171111.5:c.742G>A	p.Ala248Thr	p.A248T	ENST00000171111	NM_203500.1	248	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3824594	3824594	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1389560620		P-0044832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	60	524	0	ENST00000262367.5:c.2259G>A	p.Met753Ile	p.M753I	ENST00000262367	NM_004380.2	753	atG/atA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099467	27099467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	42	348	0	ENST00000324856.7:c.3704G>A	p.Ser1235Asn	p.S1235N	ENST00000324856	NM_006015.4	1235	aGc/aAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101417	27101417	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	263	491	0	ENST00000324856.7:c.4703del	p.Pro1568LeufsTer44	p.P1568Lfs*44	ENST00000324856	NM_006015.4	1567	Ccc/cc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599234	28599234	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	84	754	2	ENST00000253063.3:c.685del	p.Gln229ArgfsTer18	p.Q229Rfs*18	ENST00000253063	NM_031459.4	227	gCc/gc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs769210858		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	305	734	1	ENST00000361632.4:c.1404del	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	162	398	0	ENST00000262741.5:c.883del	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468106	120468106	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	126	692	0	ENST00000256646.2:c.4333A>C	p.Ser1445Arg	p.S1445R	ENST00000256646	NM_024408.3	1445	Agc/Cgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	318	425	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129344	64129344	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs756803659		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	287	743	0	ENST00000334205.4:c.776C>A	p.Pro259His	p.P259H	ENST00000334205	NM_003942.2	259	cCt/cAt																																																																														
EED	8726	MSKCC	GRCh37	11	85961474	85961474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1402767573		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	74	174	0	ENST00000263360.6:c.251G>A	p.Cys84Tyr	p.C84Y	ENST00000263360	NM_003797.3	84	tGt/tAt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197308	94197308	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	157	337	0	ENST00000323929.3:c.1196del	p.Phe399SerfsTer29	p.F399Sfs*29	ENST00000323929	NM_005591.3	399	tTc/tc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344558	118344558	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs200600434		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	43	372	1	ENST00000534358.1:c.2684A>G	p.Lys895Arg	p.K895R	ENST00000534358	NM_005933.3	895	aAg/aGg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118368661	118368661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	92	280	0	ENST00000534358.1:c.5675G>A	p.Arg1892His	p.R1892H	ENST00000534358	NM_005933.3	1892	cGt/cAt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	138	433	4	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427743	49427743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	247	622	1	ENST00000301067.7:c.10745G>A	p.Arg3582Gln	p.R3582Q	ENST00000301067	NM_003482.3	3582	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445257	49445257	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1328	74	859	5	ENST00000301067.7:c.2209del	p.Arg737GlyfsTer193	p.R737Gfs*193	ENST00000301067	NM_003482.3	737	Cgg/gg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	195	758	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856155	111856155	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1170508105		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	159	524	0	ENST00000341259.2:c.206A>G	p.Asp69Gly	p.D69G	ENST00000341259	NM_005475.2	69	gAc/gGc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856196	111856196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	137	379	1	ENST00000341259.2:c.247C>T	p.Arg83Trp	p.R83W	ENST00000341259	NM_005475.2	83	Cgg/Tgg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115385	115115386	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	73	386	1	ENST00000257566.3:c.940dup	p.Arg314LysfsTer13	p.R314Kfs*13	ENST00000257566	NM_016569.3	314	aga/aAga																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975687	26975687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	148	384	0	ENST00000381527.3:c.1195C>T	p.Pro399Ser	p.P399S	ENST00000381527	NM_001260.1	399	Ccc/Tcc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012358	29012359	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	154	367	0	ENST00000282397.4:c.512dup	p.Phe172ValfsTer4	p.F172Vfs*4	ENST00000282397	NM_002019.4	171	aag/aaAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	138	370	1	ENST00000380152.3:c.5351del	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610503	81610503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137908024		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	118	408	0	ENST00000298171.2:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000298171	NM_000369.2	701	Cgc/Tgc																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022990	33022990	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	110	491	0	ENST00000300177.4:c.104del	p.Pro35ArgfsTer49	p.P35Rfs*49	ENST00000300177	NM_001191322.1	33	atC/at																																																																														
MGA	23269	MSKCC	GRCh37	15	42040841	42040841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	145	366	0	ENST00000219905.7:c.5219C>T	p.Ala1740Val	p.A1740V	ENST00000219905	NM_001164273.1	1740	gCt/gTt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43773126	43773126	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	49	549	0	ENST00000382044.4:c.466T>C	p.Ser156Pro	p.S156P	ENST00000382044	NM_001141980.1	156	Tca/Cca																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420192	88420192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	166	441	0	ENST00000360948.2:c.2494C>T	p.Pro832Ser	p.P832S	ENST00000360948	NM_001012338.2	832	Cca/Tca																																																																														
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	144	469	1	ENST00000355112.3:c.3651del	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900369	3900369	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs762902238		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	261	622	2	ENST00000262367.5:c.727C>A	p.Leu243Ile	p.L243I	ENST00000262367	NM_004380.2	243	Cta/Ata																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865869	56865869	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761782738		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	125	347	1	ENST00000308159.5:c.1201G>A	p.Asp401Asn	p.D401N	ENST00000308159	NM_014669.4	401	Gac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	137	418	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	256	662	2	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110166	8110166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148133660		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	236	596	0	ENST00000585124.1:c.439C>T	p.Arg147Trp	p.R147W	ENST00000585124	NM_004217.3	147	Cgg/Tgg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	176	601	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682428	37682428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	185	429	0	ENST00000447079.4:c.3619C>T	p.Gln1207Ter	p.Q1207*	ENST00000447079	NM_015083.1	1207	Cag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864757	37864757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	52	499	0	ENST00000269571.5:c.409C>A	p.Leu137Met	p.L137M	ENST00000269571		137	Ctg/Atg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519738		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	283	752	2	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	194	552	2	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761414	59761417	+	frameshift_variant	Frame_Shift_Del	DEL	TTTG	TTTG	-	rs771028677		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	104	409	0	ENST00000259008.2:c.2990_2993del	p.Thr997ArgfsTer61	p.T997Rfs*61	ENST00000259008	NM_032043.2	997	aCAAAg/ag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	344	892	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56376681	56376681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	181	433	0	ENST00000348428.3:c.721G>T	p.Gly241Cys	p.G241C	ENST00000348428	NM_006785.3	241	Ggc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222772	5222772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs770446171		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	259	783	0	ENST00000357368.4:c.3031C>T	p.Arg1011Ter	p.R1011*	ENST00000357368	NM_002850.3	1011	Cga/Tga																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627687	14627687	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	213	604	0	ENST00000254322.2:c.383A>C	p.Asp128Ala	p.D128A	ENST00000254322	NM_006145.1	128	gAt/gCt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15278138	15278138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756495084		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	288	809	0	ENST00000263388.2:c.5284G>A	p.Val1762Met	p.V1762M	ENST00000263388	NM_000435.2	1762	Gtg/Atg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288710	15288710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	23	57	0	ENST00000263388.2:c.4029del	p.Cys1344ValfsTer76	p.C1344Vfs*76	ENST00000263388	NM_000435.2	1343	ccC/cc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355060	15355060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199540579		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	357	868	1	ENST00000263377.2:c.2563G>A	p.Ala855Thr	p.A855T	ENST00000263377	NM_058243.2	855	Gca/Aca																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950457	17950457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	291	665	0	ENST00000458235.1:c.1270G>T	p.Asp424Tyr	p.D424Y	ENST00000458235	NM_000215.3	424	Gat/Tat																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953977	17953977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs964736085		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	297	811	0	ENST00000458235.1:c.425G>A	p.Arg142His	p.R142H	ENST00000458235	NM_000215.3	142	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	276	700	5	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	323	832	5	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
CD79A	973	MSKCC	GRCh37	19	42385003	42385003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	277	697	0	ENST00000221972.3:c.637G>T	p.Val213Leu	p.V213L	ENST00000221972	NM_021601.3	213	Gtg/Ttg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906393	50906393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762330164		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	309	838	1	ENST00000440232.2:c.1054C>T	p.Arg352Cys	p.R352C	ENST00000440232	NM_002691.3	352	Cgc/Tgc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716301	52716301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	261	672	2	ENST00000322088.6:c.745C>T	p.Arg249Cys	p.R249C	ENST00000322088	NM_014225.5	249	Cgc/Tgc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605795	46605795	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	158	446	2	ENST00000263734.3:c.1444-1G>A		p.X482_splice	ENST00000263734	NM_001430.4	482																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128046415	128046415	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749390618		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	124	328	0	ENST00000285398.2:c.848G>A	p.Arg283His	p.R283H	ENST00000285398	NM_000122.1	283	cGt/cAt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682809	190682810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1275949235		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	34	317	0	ENST00000441310.2:c.492dup	p.Cys165MetfsTer2	p.C165Mfs*2	ENST00000441310	NM_000534.4	162	gca/gcAa																																																																														
CASP8	841	MSKCC	GRCh37	2	202150013	202150013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	52	477	1	ENST00000358485.4:c.1454G>A	p.Cys485Tyr	p.C485Y	ENST00000358485	NM_001080125.1	485	tGc/tAc																																																																														
INHA	3623	MSKCC	GRCh37	2	220437222	220437223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1286117855		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1346	88	992	1	ENST00000243786.2:c.132dup	p.Ala45ArgfsTer29	p.A45Rfs*29	ENST00000243786	NM_002191.3	42	-/C																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793431	242793431	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376257658		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	232	626	0	ENST00000334409.5:c.646G>A	p.Val216Met	p.V216M	ENST00000334409	NM_005018.2	216	Gtg/Atg																																																																														
PAK7	0	MSKCC	GRCh37	20	9560955	9560955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	168	425	0	ENST00000353224.5:c.827C>T	p.Thr276Ile	p.T276I	ENST00000353224	NM_177990.2	276	aCa/aTa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39708808	39708808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183058581		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	37	206	0	ENST00000361337.2:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000361337	NM_003286.2	140	cGa/cAa																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961495	54961495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769961096		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	161	470	0	ENST00000312783.6:c.137G>A	p.Arg46Gln	p.R46Q	ENST00000312783	NM_198436.1	46	cGg/cAg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485851	57485851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	152	407	0	ENST00000371085.3:c.1152G>T	p.Gln384His	p.Q384H	ENST00000371085	NM_000516.4	384	caG/caT																																																																														
EP300	2033	MSKCC	GRCh37	22	41527572	41527572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	64	420	0	ENST00000263253.7:c.1463C>T	p.Ala488Val	p.A488V	ENST00000263253	NM_001429.3	488	gCa/gTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41548281	41548281	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	112	290	0	ENST00000263253.7:c.3072del	p.Glu1025ArgfsTer34	p.E1025Rfs*34	ENST00000263253	NM_001429.3	1023	atA/at																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391168	89391168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772463834		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	153	438	0	ENST00000336596.2:c.1234G>A	p.Val412Ile	p.V412I	ENST00000336596	NM_005233.5	412	Gtt/Att																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851574	134851574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747682274		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	166	441	0	ENST00000398015.3:c.980G>A	p.Arg327His	p.R327H	ENST00000398015	NM_004441.4	327	cGc/cAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898710	134898710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	86	264	1	ENST00000398015.3:c.1768G>T	p.Gly590Trp	p.G590W	ENST00000398015	NM_004441.4	590	Ggg/Tgg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664989	138664989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	24	278	0	ENST00000330315.3:c.576del	p.Lys193SerfsTer78	p.K193Sfs*78	ENST00000330315	NM_023067.3	192	ccC/cc																																																																														
ATR	545	MSKCC	GRCh37	3	142261554	142261555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1043355995		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	105	294	0	ENST00000350721.4:c.3402dup	p.Asn1135Ter	p.N1135*	ENST00000350721	NM_001184.3	1134	-/T																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	97	283	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
MSH3	4437	MSKCC	GRCh37	5	79966007	79966007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772141055		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	148	450	0	ENST00000265081.6:c.671G>A	p.Arg224Gln	p.R224Q	ENST00000265081	NM_002439.4	224	cGg/cAg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	359	462	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112170762	112170765	+	frameshift_variant	Frame_Shift_Del	DEL	CTTA	CTTA	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	188	545	0	ENST00000257430.4:c.1863_1866del	p.Tyr622GlyfsTer7	p.Y622Gfs*7	ENST00000257430	NM_000038.5	620	CTTAct/ct																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	105	317	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149512344	149512344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368602685		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	231	678	1	ENST00000261799.4:c.1096G>A	p.Ala366Thr	p.A366T	ENST00000261799	NM_002609.3	366	Gcc/Acc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048881	180048881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751002839		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	304	897	2	ENST00000261937.6:c.1681G>A	p.Glu561Lys	p.E561K	ENST00000261937	NM_182925.4	561	Gaa/Aaa																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056566	26056566	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1444425351		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	102	318	0	ENST00000343677.2:c.91A>G	p.Thr31Ala	p.T31A	ENST00000343677	NM_005319.3	31	Acg/Gcg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910570	29910574	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGG	CCCGG	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	160	332	0	ENST00000376809.5:c.117_121del	p.Gly40ArgfsTer57	p.G40Rfs*57	ENST00000376809	NM_002116.7	37	tCCCGG/t																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672551	30672551	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773270002		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	186	548	0	ENST00000376406.3:c.4409C>T	p.Thr1470Met	p.T1470M	ENST00000376406	NM_014641.2	1470	aCg/aTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	330	444	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188294	32188295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs766348245		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	264	768	3	ENST00000375023.3:c.1046dup	p.Thr350HisfsTer4	p.T350Hfs*4	ENST00000375023	NM_004557.3	349	ggc/ggGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405960	157405960	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	181	533	0	ENST00000346085.5:c.2204del	p.Pro735HisfsTer10	p.P735Hfs*10	ENST00000346085	NM_020732.3	734	ggC/gg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259460	55259460	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143884981		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	181	536	0	ENST00000275493.2:c.2518G>A	p.Ala840Thr	p.A840T	ENST00000275493	NM_005228.3	840	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874914	151874914	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	41	338	0	ENST00000262189.6:c.7624del	p.Ser2542HisfsTer20	p.S2542Hfs*20	ENST00000262189	NM_170606.2	2542	Tca/ca																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38139101	38139101	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	130	316	0	ENST00000317025.8:c.3502G>T	p.Gly1168Cys	p.G1168C	ENST00000317025	NM_023034.1	1168	Ggt/Tgt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205092	38205092	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	122	480	1	ENST00000317025.8:c.598del	p.Ser200AlafsTer20	p.S200Afs*20	ENST00000317025	NM_023034.1	200	Agc/gc																																																																														
NBN	4683	MSKCC	GRCh37	8	90958480	90958480	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	61	300	1	ENST00000265433.3:c.1958del	p.Lys653SerfsTer4	p.K653Sfs*4	ENST00000265433	NM_002485.4	653	aAg/ag																																																																														
FANCC	2176	MSKCC	GRCh37	9	97864086	97864086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	116	483	1	ENST00000289081.3:c.1580A>G	p.Asp527Gly	p.D527G	ENST00000289081	NM_000136.2	527	gAc/gGc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250050	110250050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	295	794	0	ENST00000374672.4:c.625G>A	p.Asp209Asn	p.D209N	ENST00000374672	NM_004235.4	209	Gac/Aac																																																																														
ABL1	25	MSKCC	GRCh37	9	133759526	133759526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773475680		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	277	680	1	ENST00000318560.5:c.1849C>T	p.Arg617Cys	p.R617C	ENST00000318560	NM_005157.4	617	Cgc/Tgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405225	139405225	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776698364		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	332	873	1	ENST00000277541.6:c.2620G>A	p.Val874Ile	p.V874I	ENST00000277541	NM_017617.3	874	Gtt/Att																																																																														
ARAF	369	MSKCC	GRCh37	X	47429012	47429012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs754787460		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	252	713	0	ENST00000377045.4:c.1375G>A	p.Gly459Arg	p.G459R	ENST00000377045	NM_001654.4	459	Ggg/Agg																																																																														
MED12	9968	MSKCC	GRCh37	X	70345231	70345231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	210	581	2	ENST00000374080.3:c.2257C>T	p.Arg753Trp	p.R753W	ENST00000374080		753	Cgg/Tgg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197725	123197725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs749851312		P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	112	354	1	ENST00000218089.9:c.1849C>T	p.Arg617Trp	p.R617W	ENST00000218089	NM_001042749.1	617	Cgg/Tgg																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858192	152858192	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	303	833	0	ENST00000406277.2:c.424-1G>A		p.X142_splice	ENST00000406277	NM_152274.4	142																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562487	21562487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	53	136	0	ENST00000382592.4:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000382592	NM_014572.2	478	Gcc/Acc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343593	343593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	118	890	0	ENST00000262320.3:c.2081C>T	p.Thr694Ile	p.T694I	ENST00000262320	NM_003502.3	694	aCc/aTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106196693	106196693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	102	554	0	ENST00000380013.4:c.5026C>T	p.His1676Tyr	p.H1676Y	ENST00000380013	NM_001127208.2	1676	Cat/Tat																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137527281	137527281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	27	547	0	ENST00000367739.4:c.365G>A	p.Cys122Tyr	p.C122Y	ENST00000367739	NM_000416.2	122	tGc/tAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	261	382	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0044847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	580	608	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0044847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	287	317	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519896		P-0044847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	258	421	1	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78858821	78858821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768126116		P-0044847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	467	807	1	ENST00000306801.3:c.1856C>T	p.Ala619Val	p.A619V	ENST00000306801	NM_020761.2	619	gCg/gTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685305	89685307	+	frameshift_variant	Frame_Shift_Del	DEL	TAT	TAT	T			P-0044847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	105	136	0	ENST00000371953.3:c.201_202del	p.Tyr68GlnfsTer5	p.Y68Qfs*5	ENST00000371953	NM_000314.4	67	aTATac/aTac																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	34	211	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574010	7574026	+	frameshift_variant	Frame_Shift_Del	DEL	CTCGAAGCGCTCACGCC	CTCGAAGCGCTCACGCC	-			P-0044903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	125	701	0	ENST00000269305.4:c.1001_1017del	p.Gly334AspfsTer7	p.G334Dfs*7	ENST00000269305	NM_001126112.2	334	gGGCGTGAGCGCTTCGAG/g																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120399	70120400	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0044903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	227	1029	0	ENST00000245479.2:c.1401_1402del	p.Tyr468HisfsTer109	p.Y468Hfs*109	ENST00000245479	NM_000346.3	467	acCTac/acac																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266828	41266828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	55	289	0	ENST00000349496.5:c.499G>A	p.Val167Met	p.V167M	ENST00000349496	NM_001904.3	167	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519977		P-0044905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	493	824	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431354	49431354	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	186	493	0	ENST00000301067.7:c.9785del	p.Lys3262ArgfsTer68	p.K3262Rfs*68	ENST00000301067	NM_003482.3	3262	aAg/ag																																																																														
ALK	238	MSKCC	GRCh37	2	29917778	29917778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	389	677	0	ENST00000389048.3:c.890A>G	p.Glu297Gly	p.E297G	ENST00000389048	NM_004304.4	297	gAg/gGg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448576	89448576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	197	477	1	ENST00000336596.2:c.1540G>T	p.Ala514Ser	p.A514S	ENST00000336596	NM_005233.5	514	Gcc/Tcc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536223	106536223	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1431841112		P-0044905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	216	445	0	ENST00000369096.4:c.190G>C	p.Asp64His	p.D64H	ENST00000369096	NM_001198.3	64	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	554	768	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	797	646	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11137023	11137023	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	340	631	0	ENST00000344626.4:c.3215+1G>C		p.X1072_splice	ENST00000344626	NM_003072.3	1072																																																																															
BARD1	580	MSKCC	GRCh37	2	215645796	215645796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	301	427	0	ENST00000260947.4:c.802G>A	p.Glu268Lys	p.E268K	ENST00000260947	NM_000465.2	268	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266483	41266483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	248	354	0	ENST00000349496.5:c.280G>T	p.Val94Leu	p.V94L	ENST00000349496	NM_001904.3	94	Gta/Tta																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965481	68965481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	115	575	0	ENST00000288368.4:c.1093G>C	p.Gly365Arg	p.G365R	ENST00000288368	NM_024870.2	365	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974711	21975575	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	TTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCAGCAAAGGCGTGTTTGAGTGCGTTCACTCTGTTAAAAAGAAATCCGCCCCCGCCCCGTTTCCTTCCTCCGCGATACAACCTTCCTAACTGCCAAATTGAATCGGGGTGTTTGGTGTCATAGGGAAAGTATGGCTTCTTCTTTTAATCATAAGAAAAAGCAAAACTATTCTTTCCTAGTTGTGAGAGCCCCACCGAGAATCGAAATCACCTGTACGACTAGAAAGTGTCCCCCTACCCCCTCAACCCTTGATTTTCAGGAGCGCGGGGTTCACTAAGTCAGAAACCCTAGTTCAAAGGATTCCTTTTGGAGAGTCGGACTGCTCTCTCCTTCCCCTCCCCTT	TTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCAGCAAAGGCGTGTTTGAGTGCGTTCACTCTGTTAAAAAGAAATCCGCCCCCGCCCCGTTTCCTTCCTCCGCGATACAACCTTCCTAACTGCCAAATTGAATCGGGGTGTTTGGTGTCATAGGGAAAGTATGGCTTCTTCTTTTAATCATAAGAAAAAGCAAAACTATTCTTTCCTAGTTGTGAGAGCCCCACCGAGAATCGAAATCACCTGTACGACTAGAAAGTGTCCCCCTACCCCCTCAACCCTTGATTTTCAGGAGCGCGGGGTTCACTAAGTCAGAAACCCTAGTTCAAAGGATTCCTTTTGGAGAGTCGGACTGCTCTCTCCTTCCCCTCCCCTT	-			P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	220	341	0				ENST00000304494	NM_000077.4			1/3																																																																													
CDKN2A	1029	MSKCC	GRCh37	9	21974711	21975575	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	TTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCAGCAAAGGCGTGTTTGAGTGCGTTCACTCTGTTAAAAAGAAATCCGCCCCCGCCCCGTTTCCTTCCTCCGCGATACAACCTTCCTAACTGCCAAATTGAATCGGGGTGTTTGGTGTCATAGGGAAAGTATGGCTTCTTCTTTTAATCATAAGAAAAAGCAAAACTATTCTTTCCTAGTTGTGAGAGCCCCACCGAGAATCGAAATCACCTGTACGACTAGAAAGTGTCCCCCTACCCCCTCAACCCTTGATTTTCAGGAGCGCGGGGTTCACTAAGTCAGAAACCCTAGTTCAAAGGATTCCTTTTGGAGAGTCGGACTGCTCTCTCCTTCCCCTCCCCTT	TTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCAGCAAAGGCGTGTTTGAGTGCGTTCACTCTGTTAAAAAGAAATCCGCCCCCGCCCCGTTTCCTTCCTCCGCGATACAACCTTCCTAACTGCCAAATTGAATCGGGGTGTTTGGTGTCATAGGGAAAGTATGGCTTCTTCTTTTAATCATAAGAAAAAGCAAAACTATTCTTTCCTAGTTGTGAGAGCCCCACCGAGAATCGAAATCACCTGTACGACTAGAAAGTGTCCCCCTACCCCCTCAACCCTTGATTTTCAGGAGCGCGGGGTTCACTAAGTCAGAAACCCTAGTTCAAAGGATTCCTTTTGGAGAGTCGGACTGCTCTCTCCTTCCCCTCCCCTT	-			P-0044918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	220	341	0				ENST00000304494	NM_000077.4			1/3																																																																													
NOTCH2	4853	MSKCC	GRCh37	1	120480570	120480570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	48	451	0	ENST00000256646.2:c.3247G>A	p.Ala1083Thr	p.A1083T	ENST00000256646	NM_024408.3	1083	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577076	7577083	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCTTCC	TCTCTTCC	-			P-0044966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	339	810	0	ENST00000269305.4:c.855_862del	p.Glu286SerfsTer17	p.E286Sfs*17	ENST00000269305	NM_001126112.2	285	gaGGAAGAGAat/gaat																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62303972	62303972	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs778675789		P-0044966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	245	639	0	ENST00000508582.2:c.835G>A	p.Val279Met	p.V279M	ENST00000508582		279	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974701	21974715	+	frameshift_variant	Frame_Shift_Del	DEL	ATTCGGTGCGTTGGG	ATTCGGTGCGTTGGG	C			P-0044966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	155	437	0	ENST00000304494.5:c.112_126delinsG	p.Pro38GlufsTer77	p.P38Efs*77	ENST00000304494	NM_000077.4	38	CCCAACGCACCGAAT/G																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974701	21974715	+	frameshift_variant	Frame_Shift_Del	DEL	ATTCGGTGCGTTGGG	ATTCGGTGCGTTGGG	C			P-0044966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	155	437	0	ENST00000304494.5:c.112_126delinsG	p.Pro38GlufsTer77	p.P38Efs*77	ENST00000304494	NM_000077.4	38	CCCAACGCACCGAAT/G																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258380	16258380	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	91	463	0	ENST00000375759.3:c.5645A>G	p.Asn1882Ser	p.N1882S	ENST00000375759	NM_015001.2	1882	aAc/aGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	107	539	0	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	91	547	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45799267	45799267	+	intron_variant	Intron	SNP	C	C	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	51	302	0	ENST00000372115.3:c.158-34G>T		p.*53*	ENST00000372115	NM_001048171.1																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120459166	120459166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113023165		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	70	483	1	ENST00000256646.2:c.6179G>A	p.Arg2060His	p.R2060H	ENST00000256646	NM_024408.3	2060	cGc/cAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120461161	120461161	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	40	287	1	ENST00000256646.2:c.5797C>T	p.Arg1933Ter	p.R1933*	ENST00000256646	NM_024408.3	1933	Cga/Tga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843643	156843643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	110	708	0	ENST00000524377.1:c.1069G>A	p.Gly357Ser	p.G357S	ENST00000524377	NM_002529.3	357	Ggc/Agc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	35	282	0	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851180	63851180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	81	455	0	ENST00000279873.7:c.1958C>T	p.Ser653Leu	p.S653L	ENST00000279873	NM_032199.2	653	tCg/tTg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851575	63851575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376632312		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	77	411	0	ENST00000279873.7:c.2353C>T	p.Arg785Cys	p.R785C	ENST00000279873	NM_032199.2	785	Cgc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	92	278	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	57	367	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571819	64571819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	88	601	0	ENST00000337652.1:c.1835G>A	p.Arg612His	p.R612H	ENST00000337652	NM_130803.2	612	cGc/cAc																																																																														
ATM	472	MSKCC	GRCh37	11	108175400	108175400	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs786203796		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	22	151	0	ENST00000278616.4:c.5497-2A>G		p.X1833_splice	ENST00000278616	NM_000051.3	1833																																																																															
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587781894		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	59	352	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992104	11992104	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	34	231	0	ENST00000396373.4:c.194A>G	p.Asp65Gly	p.D65G	ENST00000396373	NM_001987.4	65	gAc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	14	296	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245108	46245108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753528071		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	76	410	0	ENST00000334344.6:c.3202C>T	p.Arg1068Cys	p.R1068C	ENST00000334344	NM_152641.2	1068	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420229	49420229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	89	519	1	ENST00000301067.7:c.15520C>T	p.Arg5174Trp	p.R5174W	ENST00000301067	NM_003482.3	5174	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440542	49440542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773033619		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	123	597	0	ENST00000301067.7:c.4268G>A	p.Arg1423His	p.R1423H	ENST00000301067	NM_003482.3	1423	cGt/cAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56477655	56477655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142735651		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	57	471	1	ENST00000267101.3:c.203C>T	p.Thr68Met	p.T68M	ENST00000267101	NM_001982.3	68	aCg/aTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	104	594	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861874	57861874	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	74	504	0	ENST00000228682.2:c.1175A>G	p.His392Arg	p.H392R	ENST00000228682	NM_005269.2	392	cAt/cGt																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813303	102813303	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	68	417	0	ENST00000307046.8:c.386T>C	p.Met129Thr	p.M129T	ENST00000307046	NM_001111285.1	129	aTg/aCg																																																																														
RB1	5925	MSKCC	GRCh37	13	49030387	49030387	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs373601944		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	42	246	0	ENST00000267163.4:c.1862G>A	p.Arg621His	p.R621H	ENST00000267163	NM_000321.2	621	cGt/cAt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107968	30107968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757900101		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	74	359	0	ENST00000331968.5:c.839G>A	p.Arg280Gln	p.R280Q	ENST00000331968	NM_002742.2	280	cGg/cAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562770	95562770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	36	209	0	ENST00000343455.3:c.4487C>T	p.Ser1496Leu	p.S1496L	ENST00000343455	NM_177438.2	1496	tCa/tTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42035370	42035370	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	44	249	0	ENST00000219905.7:c.5212G>A	p.Glu1738Lys	p.E1738K	ENST00000219905	NM_001164273.1	1738	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	42058655	42058655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	39	178	1	ENST00000219905.7:c.8375T>C	p.Leu2792Pro	p.L2792P	ENST00000219905	NM_001164273.1	2792	cTg/cCg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121610	2121610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45509392		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	83	534	0	ENST00000219476.3:c.1939G>A	p.Asp647Asn	p.D647N	ENST00000219476	NM_000548.3	647	Gac/Aac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519884		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	32	291	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274173	10274173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	55	380	1	ENST00000330684.3:c.96del	p.Ala33ArgfsTer2	p.A33Rfs*2	ENST00000330684	NM_001134407.1	32	ccC/cc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347600	89347600	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	55	546	0	ENST00000301030.4:c.5350T>G	p.Ser1784Ala	p.S1784A	ENST00000301030	NM_001256183.1	1784	Tcc/Gcc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984230	7984230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	72	490	1	ENST00000319144.4:c.499C>T	p.Arg167Trp	p.R167W	ENST00000319144	NM_001139.2	167	Cgg/Tgg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965426	15965426	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	43	247	0	ENST00000268712.3:c.5380C>T	p.Arg1794Ter	p.R1794*	ENST00000268712	NM_006311.3	1794	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15976869	15976869	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	38	219	0	ENST00000268712.3:c.3685C>T	p.Arg1229Ter	p.R1229*	ENST00000268712	NM_006311.3	1229	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37871746	37871746	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142783371		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	113	543	0	ENST00000269571.5:c.1270G>A	p.Val424Ile	p.V424I	ENST00000269571		424	Gtc/Atc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	33	566	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119978	70119978	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	43	284	0	ENST00000245479.2:c.983del	p.Pro328ArgfsTer55	p.P328Rfs*55	ENST00000245479	NM_000346.3	327	aCc/ac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5225818	5225818	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	90	544	0	ENST00000357368.4:c.2414A>G	p.Tyr805Cys	p.Y805C	ENST00000357368	NM_002850.3	805	tAc/tGc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349565	15349565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	103	667	0	ENST00000263377.2:c.4009C>T	p.Arg1337Cys	p.R1337C	ENST00000263377	NM_058243.2	1337	Cgc/Tgc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350023	15350023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1489035830		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	102	640	1	ENST00000263377.2:c.3629C>T	p.Pro1210Leu	p.P1210L	ENST00000263377	NM_058243.2	1210	cCg/cTg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18277075	18277075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376215289		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	51	415	0	ENST00000222254.8:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000222254	NM_005027.3	508	Cgc/Tgc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50917102	50917102	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	99	635	0	ENST00000440232.2:c.2354A>G	p.His785Arg	p.H785R	ENST00000440232	NM_002691.3	785	cAc/cGc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519946		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	72	484	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716329	52716329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863225094		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	16	473	0	ENST00000322088.6:c.773G>A	p.Arg258His	p.R258H	ENST00000322088	NM_014225.5	258	cGc/cAc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99185045	99185045	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs778972642		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	53	310	1	ENST00000074304.5:c.2447C>T	p.Thr816Met	p.T816M	ENST00000074304	NM_001134224.1	816	aCg/aTg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24159098	24159098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	53	331	0	ENST00000263121.7:c.770A>G	p.Gln257Arg	p.Q257R	ENST00000263121	NM_003073.3	257	cAg/cGg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163533	47163533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	18	185	0	ENST00000409792.3:c.2593A>G	p.Asn865Asp	p.N865D	ENST00000409792	NM_014159.6	865	Aat/Gat																																																																														
ATR	545	MSKCC	GRCh37	3	142257337	142257337	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1210104615		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	51	210	1	ENST00000350721.4:c.3712A>G	p.Ile1238Val	p.I1238V	ENST00000350721	NM_001184.3	1238	Ata/Gta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	46	394	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181425	185181425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1435276633		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	33	298	0	ENST00000265026.3:c.1366C>T	p.Arg456Ter	p.R456*	ENST00000265026	NM_004721.4	456	Cga/Tga																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190762	185190762	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	54	421	0	ENST00000265026.3:c.1644-1G>T		p.X548_splice	ENST00000265026	NM_004721.4	548																																																																															
KIT	3815	MSKCC	GRCh37	4	55604643	55604643	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs745651409		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	66	381	0	ENST00000288135.5:c.2851G>A	p.Val951Ile	p.V951I	ENST00000288135	NM_000222.2	951	Gta/Ata																																																																														
SDHA	6389	MSKCC	GRCh37	5	235405	235405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	89	454	0	ENST00000264932.6:c.1211C>G	p.Pro404Arg	p.P404R	ENST00000264932	NM_004168.2	404	cCc/cGc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31493322	31493322	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	29	225	0	ENST00000344624.3:c.1834del	p.Leu612Ter	p.L612*	ENST00000344624		612	Ctg/tg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31495439	31495439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	68	382	0	ENST00000344624.3:c.1709G>T	p.Arg570Ile	p.R570I	ENST00000344624		570	aGa/aTa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751901	57751901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148954251		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	57	347	0	ENST00000274289.3:c.1336C>T	p.Arg446Trp	p.R446W	ENST00000274289	NM_006622.3	446	Cgg/Tgg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673711	176673711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs570278338		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	85	225	0	ENST00000439151.2:c.4411C>T	p.Arg1471Ter	p.R1471*	ENST00000439151	NM_022455.4	1471	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176687160	176687160	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	48	286	0	ENST00000439151.2:c.5137T>C	p.Cys1713Arg	p.C1713R	ENST00000439151	NM_022455.4	1713	Tgc/Cgc																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27777871	27777871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	23	254	0	ENST00000369163.2:c.20C>T	p.Thr7Ile	p.T7I	ENST00000369163	NM_003536.2	7	aCt/aTt																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27777910	27777910	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	29	302	0	ENST00000369163.2:c.59A>G	p.Gln20Arg	p.Q20R	ENST00000369163	NM_003536.2	20	cAg/cGg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180993	32180993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	70	579	0	ENST00000375023.3:c.2357C>T	p.Pro786Leu	p.P786L	ENST00000375023	NM_004557.3	786	cCt/cTt																																																																														
FYN	2534	MSKCC	GRCh37	6	112041026	112041026	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746134687		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	30	312	1	ENST00000368678.4:c.229C>T	p.Arg77Cys	p.R77C	ENST00000368678		77	Cgt/Tgt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441974	6441974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	69	522	0	ENST00000356142.4:c.533C>T	p.Ala178Val	p.A178V	ENST00000356142	NM_018890.3	178	gCg/gTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241726	55241726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767505234		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	91	388	0	ENST00000275493.2:c.2174C>T	p.Thr725Met	p.T725M	ENST00000275493	NM_005228.3	725	aCg/aTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508259	106508259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	60	264	0	ENST00000359195.3:c.253G>A	p.Ala85Thr	p.A85T	ENST00000359195	NM_002649.2	85	Gcg/Acg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965403	68965403	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	69	422	0	ENST00000288368.4:c.1015T>C	p.Phe339Leu	p.F339L	ENST00000288368	NM_024870.2	339	Ttt/Ctt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741681	145741681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	85	625	1	ENST00000428558.2:c.822G>T	p.Gln274His	p.Q274H	ENST00000428558	NM_004260.3	274	caG/caT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460517	8460517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	60	359	0	ENST00000356435.5:c.3769C>T	p.Pro1257Ser	p.P1257S	ENST00000356435		1257	Ccg/Tcg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399471	139399471	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751810380		P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	97	639	1	ENST00000277541.6:c.4672G>A	p.Gly1558Arg	p.G1558R	ENST00000277541	NM_017617.3	1558	Ggg/Agg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418358	139418358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	97	687	0	ENST00000277541.6:c.214G>T	p.Gly72Trp	p.G72W	ENST00000277541	NM_017617.3	72	Ggg/Tgg																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156720	20156720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	44	251	0	ENST00000379607.5:c.37C>T	p.Arg13Cys	p.R13C	ENST00000379607	NM_001412.3	13	Cgc/Tgc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923024	44923024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	66	434	0	ENST00000377967.4:c.1885G>A	p.Glu629Lys	p.E629K	ENST00000377967	NM_021140.2	629	Gag/Aag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226990	53226990	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	71	531	0	ENST00000375401.3:c.2585A>G	p.Asn862Ser	p.N862S	ENST00000375401	NM_004187.3	862	aAc/aGc																																																																														
ATRX	546	MSKCC	GRCh37	X	76829713	76829713	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	36	313	0	ENST00000373344.5:c.6326+2T>C		p.X2109_splice	ENST00000373344	NM_000489.3	2109																																																																															
ATRX	546	MSKCC	GRCh37	X	76829819	76829819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	46	339	0	ENST00000373344.5:c.6222G>T	p.Glu2074Asp	p.E2074D	ENST00000373344	NM_000489.3	2074	gaG/gaT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215282	123215282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	39	273	0	ENST00000218089.9:c.2828C>T	p.Ser943Phe	p.S943F	ENST00000218089	NM_001042749.1	943	tCt/tTt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217361	123217361	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	63	303	0	ENST00000218089.9:c.3015A>T	p.Glu1005Asp	p.E1005D	ENST00000218089	NM_001042749.1	1005	gaA/gaT																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858138	152858138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	113	690	1	ENST00000406277.2:c.477G>A	p.Trp159Ter	p.W159*	ENST00000406277	NM_152274.4	159	tgG/tgA																																																																														
ATRX	546	MSKCC	GRCh37	X	76874451	76874451	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0044987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	27	162	0	ENST00000373344.5:c.5273-2A>G		p.X1758_splice	ENST00000373344	NM_000489.3	1758																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	257	298	4	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266503	55266503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	204	516	12	ENST00000275493.2:c.2795G>A	p.Arg932His	p.R932H	ENST00000275493	NM_005228.3	932	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	114	282	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112128142	112128142	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	65	246	2	ENST00000257430.4:c.646-1G>A		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																															
APC	324	MSKCC	GRCh37	5	112174268	112174268	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	142	264	2	ENST00000257430.4:c.2977A>T	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	993	Aag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	532	598	10	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920450	114920450	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	398	357	3	ENST00000543371.1:c.1391G>A	p.Arg464Lys	p.R464K	ENST00000543371	NM_001198531.1	464	aGg/aAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468092	120468092	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	212	595	0	ENST00000256646.2:c.4347G>C	p.Gln1449His	p.Q1449H	ENST00000256646	NM_024408.3	1449	caG/caC																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609646	81609646	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	200	508	1	ENST00000298171.2:c.1244A>T	p.Lys415Met	p.K415M	ENST00000298171	NM_000369.2	415	aAg/aTg																																																																														
AKT1	207	MSKCC	GRCh37	14	105243037	105243038	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTGGTCCACTGCAGGCAGCGGATG			P-0044999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	205	1050	0	ENST00000349310.3:c.222_245dup	p.Ile75_Thr82dup	p.I75_T82dup	ENST00000349310	NM_001014432.1	75	act/acCATCCGCTGCCTGCAGTGGACCACt																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121338	29121338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	96	562	0	ENST00000328354.6:c.337T>C	p.Tyr113His	p.Y113H	ENST00000328354	NM_007194.3	113	Tac/Cac																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	34	332	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	84	316	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602341	10602341	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	114	821	0	ENST00000171111.5:c.1237del	p.Arg413ValfsTer45	p.R413Vfs*45	ENST00000171111	NM_203500.1	413	Cgt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	131	584	2	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
STK11	6794	MSKCC	GRCh37	19	1207153	1207155	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1414068445		P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	90	802	0	ENST00000326873.7:c.250_252del	p.Lys84del	p.K84del	ENST00000326873	NM_000455.4	81	AAG/-																																																																														
VHL	7428	MSKCC	GRCh37	3	10183817	10183817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1131690959		P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	185	639	0	ENST00000256474.2:c.286C>T	p.Gln96Ter	p.Q96*	ENST00000256474	NM_000551.3	96	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	191	747	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244280	153244280	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	28	227	0	ENST00000281708.4:c.1877C>A	p.Ala626Asp	p.A626D	ENST00000281708	NM_033632.3	626	gCt/gAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161950	47161951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	96	310	0	ENST00000409792.3:c.4175dup	p.Asn1392LysfsTer6	p.N1392Kfs*6	ENST00000409792	NM_014159.6	1392	aac/aaAc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500476	99500476	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	68	698	1	ENST00000268035.6:c.3913del	p.Leu1305TrpfsTer45	p.L1305Wfs*45	ENST00000268035	NM_000875.3	1303	gtC/gt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043407	180043407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757396801		P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	129	741	4	ENST00000261937.6:c.3179G>A	p.Arg1060Gln	p.R1060Q	ENST00000261937	NM_182925.4	1060	cGg/cAg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259391	36259391	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	72	574	0	ENST00000300305.3:c.100G>A	p.Ala34Thr	p.A34T	ENST00000300305		34	Gcc/Acc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600363	10600363	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	158	758	0	ENST00000171111.5:c.1492C>T	p.Arg498Ter	p.R498*	ENST00000171111	NM_203500.1	498	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41247864	41247865	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T	rs80357537		P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	30	396	0	ENST00000357654.3:c.668dup	p.Ala224GlyfsTer4	p.A224Gfs*4	ENST00000357654	NM_007294.3	223	aag/aaAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022898	27022898	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1333869920		P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	11	45	0	ENST00000324856.7:c.4G>A	p.Ala2Thr	p.A2T	ENST00000324856	NM_006015.4	2	Gcc/Acc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274812	123274812	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	47	410	0	ENST00000358487.5:c.1106T>A	p.Ile369Asn	p.I369N	ENST00000358487	NM_000141.4	369	aTt/aAt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061690	38061690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	26	396	0	ENST00000250448.2:c.299G>A	p.Gly100Asp	p.G100D	ENST00000250448	NM_004496.3	100	gGc/gAc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774181	66774181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	69	1022	0	ENST00000307102.5:c.657G>T	p.Met219Ile	p.M219I	ENST00000307102	NM_002755.3	219	atG/atT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348476	89348476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	167	789	1	ENST00000301030.4:c.4474C>T	p.Leu1492Phe	p.L1492F	ENST00000301030	NM_001256183.1	1492	Ctc/Ttc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627347	37627347	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	48	602	0	ENST00000447079.4:c.1262A>C	p.Lys421Thr	p.K421T	ENST00000447079	NM_015083.1	421	aAg/aCg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213585	36213585	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	117	946	0	ENST00000222270.7:c.2687T>G	p.Leu896Arg	p.L896R	ENST00000222270	NM_014727.1	896	cTc/cGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223593	36223593	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	61	866	1	ENST00000222270.7:c.6147del	p.Ser2050AlafsTer41	p.S2050Afs*41	ENST00000222270	NM_014727.1	2048	gCc/gc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719839	190719839	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	20	209	0	ENST00000441310.2:c.1841A>G	p.Glu614Gly	p.E614G	ENST00000441310	NM_000534.4	614	gAa/gGa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37059036	37059036	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	123	417	0	ENST00000231790.2:c.832del	p.Thr278GlnfsTer19	p.T278Qfs*19	ENST00000231790	NM_000249.3	277	gAa/ga																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149243894	149243894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	69	539	0	ENST00000360632.3:c.924G>T	p.Arg308Ser	p.R308S	ENST00000360632	NM_015472.4	308	agG/agT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	24	291	0	ENST00000263967.3:c.3145G>T	p.Gly1049Cys	p.G1049C	ENST00000263967	NM_006218.2	1049	Ggt/Tgt																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140847	37140847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	49	531	0	ENST00000373509.5:c.683T>C	p.Leu228Pro	p.L228P	ENST00000373509	NM_002648.3	228	cTg/cCg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047393	128047393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139690693		P-0045222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	45	379	0	ENST00000285398.2:c.529G>A	p.Val177Ile	p.V177I	ENST00000285398	NM_000122.1	177	Gtt/Att																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204631	128204631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	65	836	0	ENST00000341105.2:c.810C>A	p.Phe270Leu	p.F270L	ENST00000341105	NM_032638.4	270	ttC/ttA																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144002	11144002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	140	410	0	ENST00000344626.4:c.3583C>A	p.Gln1195Lys	p.Q1195K	ENST00000344626	NM_003072.3	1195	Cag/Aag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442041	52442110	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGTTCAGGAGCACGCTCAGCAAGGCATGAGTTGCACAAGAGTTGGGTATCAGCTGTGAAACCAAGAATA	CAGTTCAGGAGCACGCTCAGCAAGGCATGAGTTGCACAAGAGTTGGGTATCAGCTGTGAAACCAAGAATA	-			P-0045658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	75	349	0	ENST00000460680.1:c.256-17_308del		p.X86_splice	ENST00000460680	NM_004656.3	86																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	100	130	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0047119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	279	355	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578520	7578520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	574	878	2	ENST00000269305.4:c.410T>A	p.Leu137Gln	p.L137Q	ENST00000269305	NM_001126112.2	137	cTg/cAg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135796754	135796754	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs118203434		P-0047119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	176	303	0	ENST00000298552.3:c.733C>T	p.Arg245Ter	p.R245*	ENST00000298552	NM_001162426.1	245	Cga/Tga																																																																														
NUP93	9688	MSKCC	GRCh37	16	56857716	56857716	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370111038		P-0047119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	306	499	2	ENST00000308159.5:c.752G>A	p.Arg251His	p.R251H	ENST00000308159	NM_014669.4	251	cGc/cAc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40460301	40460301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1266628382		P-0047119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	348	696	4	ENST00000345506.4:c.2012C>T	p.Pro671Leu	p.P671L	ENST00000345506	NM_003152.3	671	cCt/cTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9546903	9546903	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	544	524	0	ENST00000353224.5:c.1119C>G	p.Tyr373Ter	p.Y373*	ENST00000353224	NM_177990.2	373	taC/taG																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0047148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	68	273	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275687	41275687	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756737848		P-0047148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	123	441	0	ENST00000349496.5:c.1582C>T	p.Arg528Cys	p.R528C	ENST00000349496	NM_001904.3	528	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs587782455		P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	95	332	1	ENST00000371953.3:c.802-2A>T		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40730802	40730802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs747513450		P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	362	604	3	ENST00000373198.4:c.3733G>A	p.Gly1245Arg	p.G1245R	ENST00000373198	NM_133170.3	1245	Gga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	138	276	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	356	706	0	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624252	89624252	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	82	214	0	ENST00000371953.3:c.27del	p.Ser10AlafsTer14	p.S10Afs*14	ENST00000371953	NM_000314.4	9	gTt/gt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368277	45368277	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	20	308	0	ENST00000262160.6:c.1325del	p.Leu442ArgfsTer12	p.L442Rfs*12	ENST00000262160	NM_005901.5	442	cTg/cg																																																																														
APC	324	MSKCC	GRCh37	5	112174093	112174097	+	frameshift_variant	Frame_Shift_Del	DEL	TTACA	TTACA	-			P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	86	258	0	ENST00000257430.4:c.2802_2806del	p.Tyr935PhefsTer3	p.Y935Ffs*3	ENST00000257430	NM_000038.5	934	acTTACAat/acat																																																																														
APC	324	MSKCC	GRCh37	5	112175933	112175936	+	frameshift_variant	Frame_Shift_Del	DEL	AACC	AACC	-			P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	54	173	0	ENST00000257430.4:c.4644_4647del	p.Asn1548LysfsTer16	p.N1548Kfs*16	ENST00000257430	NM_000038.5	1548	AACCaa/aa																																																																														
TEK	7010	MSKCC	GRCh37	9	27197350	27197351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	126	376	0	ENST00000380036.4:c.1662_1663insG	p.Ser555GlufsTer19	p.S555Efs*19	ENST00000380036	NM_000459.3	554	-/G																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0047971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	76	608	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087961	27087961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	66	349	0	ENST00000324856.7:c.2248C>T	p.Arg750Ter	p.R750*	ENST00000324856	NM_006015.4	750	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709505	176709505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	42	194	0	ENST00000439151.2:c.5932G>A	p.Glu1978Lys	p.E1978K	ENST00000439151	NM_022455.4	1978	Gaa/Aaa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	37	235	0	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0047971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	70	350	1				ENST00000310581	NM_198253.2																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139397678	139397678	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778830490		P-0047971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	112	623	0	ENST00000277541.6:c.5123C>T	p.Ser1708Leu	p.S1708L	ENST00000277541	NM_017617.3	1708	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878356	151878356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	116	405	0	ENST00000262189.6:c.6589C>T	p.Gln2197Ter	p.Q2197*	ENST00000262189	NM_170606.2	2197	Cag/Tag																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271357	26271357	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	79	433	0	ENST00000305910.3:c.256C>T	p.Gln86Ter	p.Q86*	ENST00000305910	NM_003534.2	86	Cag/Tag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73334705	73334705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	22	153	0	ENST00000377767.4:c.2755C>A	p.Gln919Lys	p.Q919K	ENST00000377767	NM_014953.3	919	Caa/Aaa																																																																														
CDH1	999	MSKCC	GRCh37	16	68856044	68856044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	101	380	0	ENST00000261769.5:c.1852G>C	p.Asp618His	p.D618H	ENST00000261769	NM_004360.3	618	Gac/Cac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44833955	44833956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	77	197	0	ENST00000377967.4:c.381dup	p.Lys128GlufsTer17	p.K128Efs*17	ENST00000377967	NM_021140.2	127	tgg/tGgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578275	+	stop_gained	Nonsense_Mutation	ONP	TGCTG	TGCTG	CGCTA			P-0047971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	56	471	0	ENST00000269305.4:c.574_578delinsTAGCG	p.Gln192_His193delinsTer	p.Q192_H193delins*	ENST00000269305	NM_001126112.2	192	CAGCAt/TAGCGt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021729	71021729	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	44	298	0	ENST00000318789.4:c.1629del	p.Lys543AsnfsTer56	p.K543Nfs*56	ENST00000318789	NM_032682.5	543	aaA/aa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633314	3633314	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	10	859	1	ENST00000294008.3:c.4937A>T	p.Glu1646Val	p.E1646V	ENST00000294008	NM_032444.2	1646	gAg/gTg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18972933	18972933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	42	612	1	ENST00000262803.5:c.2572C>T	p.Arg858Cys	p.R858C	ENST00000262803	NM_002911.3	858	Cgt/Tgt																																																																														
ERF	2077	MSKCC	GRCh37	19	42753612	42753612	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1425504754		P-0048791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	47	871	1	ENST00000222329.4:c.652C>T	p.Arg218Ter	p.R218*	ENST00000222329	NM_006494.2	218	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453135	140453136	+	missense_variant	Missense_Mutation	DNP	CA	CA	TT	rs121913377		P-0049901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	9	337	2	ENST00000288602.6:c.1799_1800delinsAA	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTG/gAA																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868438023		P-0049901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	30	758	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56170994	56170994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	21	329	0	ENST00000399503.3:c.1822G>A	p.Gly608Ser	p.G608S	ENST00000399503	NM_005921.1	608	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs967461896		P-0006492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	114	382	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087539	27087539	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	186	465	0	ENST00000324856.7:c.2113A>T	p.Ser705Cys	p.S705C	ENST00000324856	NM_006015.4	705	Agt/Tgt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673221	30673221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	58	594	2	ENST00000376406.3:c.3739G>A	p.Ala1247Thr	p.A1247T	ENST00000376406	NM_014641.2	1247	Gcc/Acc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891287	101891287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757374917		P-0006492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	54	545	1	ENST00000374994.4:c.248C>T	p.Pro83Leu	p.P83L	ENST00000374994	NM_004612.2	83	cCg/cTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884218	37884218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372043866		P-0006492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	56	482	1	ENST00000269571.5:c.3689G>A	p.Arg1230Gln	p.R1230Q	ENST00000269571		1230	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005586-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			92	16	81	0				ENST00000310581	NM_198253.2																																																																																
ERCC2	2068	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005586-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	49	452	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872957	35872957	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005586-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	43	268	0	ENST00000216797.5:c.275A>C	p.Glu92Ala	p.E92A	ENST00000216797	NM_020529.2	92	gAa/gCa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5206796	5206796	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005586-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	42	325	0	ENST00000357368.4:c.5836T>C	p.Tyr1946His	p.Y1946H	ENST00000357368	NM_002850.3	1946	Tat/Cat																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98222004	98222004	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005586-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	33	239	0	ENST00000331920.6:c.2765A>T	p.Tyr922Phe	p.Y922F	ENST00000331920	NM_000264.3	922	tAc/tTc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44833914	44833930	+	frameshift_variant	Frame_Shift_Del	DEL	TATCTGCATACCAGAGG	TATCTGCATACCAGAGG	-			P-0005586-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	47	145	0	ENST00000377967.4:c.340_356del	p.Ser114LeufsTer6	p.S114Lfs*6	ENST00000377967	NM_021140.2	113	tTATCTGCATACCAGAGG/t																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	75	963	1				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27089562	27089562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	202	968	0	ENST00000324856.7:c.2518C>T	p.Gln840Ter	p.Q840*	ENST00000324856	NM_006015.4	840	Caa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48937001	48937001	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	27	508	1	ENST00000267163.4:c.769C>T	p.Gln257Ter	p.Q257*	ENST00000267163	NM_000321.2	257	Cag/Tag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872213	45872213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	81	967	3	ENST00000391945.4:c.221C>T	p.Ser74Leu	p.S74L	ENST00000391945	NM_000400.3	74	tCa/tTa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	102	263	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
CIC	23152	MSKCC	GRCh37	19	42799020	42799020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1025458986		P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1182	172	1804	1	ENST00000575354.2:c.4504C>T	p.Pro1502Ser	p.P1502S	ENST00000575354	NM_015125.3	1502	Ccc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380271	25380271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	66	571	0	ENST00000256078.4:c.187G>A	p.Glu63Lys	p.E63K	ENST00000256078	NM_033360.2	63	Gag/Aag																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431631	6431631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	135	888	0	ENST00000356142.4:c.184G>A	p.Glu62Lys	p.E62K	ENST00000356142	NM_018890.3	62	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237610	16237610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	32	226	0	ENST00000375759.3:c.1057G>C	p.Asp353His	p.D353H	ENST00000375759	NM_015001.2	353	Gat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094347	27094347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	51	503	0	ENST00000324856.7:c.3055G>A	p.Glu1019Lys	p.E1019K	ENST00000324856	NM_006015.4	1019	Gag/Aag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78432578	78432578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	21	438	0	ENST00000370768.2:c.405G>C	p.Gln135His	p.Q135H	ENST00000370768	NM_003902.3	135	caG/caC																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156830860	156830860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	104	1316	0	ENST00000524377.1:c.134C>T	p.Ser45Phe	p.S45F	ENST00000524377	NM_002529.3	45	tCc/tTc																																																																														
PARP1	142	MSKCC	GRCh37	1	226553657	226553657	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs1320424324		P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	114	325	0	ENST00000366794.5:c.2503G>A	p.Asp835Asn	p.D835N	ENST00000366794	NM_001618.3	835	Gat/Aat																																																																														
TET1	80312	MSKCC	GRCh37	10	70406480	70406480	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	85	866	2	ENST00000373644.4:c.3994C>T	p.Gln1332Ter	p.Q1332*	ENST00000373644	NM_030625.2	1332	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692819	89692819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	15	255	0	ENST00000371953.3:c.303C>G	p.Ile101Met	p.I101M	ENST00000371953	NM_000314.4	101	atC/atG																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742921	17742921	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769178698		P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	102	1099	0	ENST00000250003.3:c.829G>A	p.Glu277Lys	p.E277K	ENST00000250003	NM_002478.4	277	Gag/Aag																																																																														
EED	8726	MSKCC	GRCh37	11	85956284	85956284	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1250649508		P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	27	242	0	ENST00000263360.6:c.13G>A	p.Glu5Lys	p.E5K	ENST00000263360	NM_003797.3	5	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374012	118374012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	34	290	0	ENST00000534358.1:c.7405G>A	p.Asp2469Asn	p.D2469N	ENST00000534358	NM_005933.3	2469	Gat/Aat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390745	118390745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	67	342	1	ENST00000534358.1:c.11395G>A	p.Glu3799Lys	p.E3799K	ENST00000534358	NM_005933.3	3799	Gaa/Aaa																																																																														
RAB35	11021	MSKCC	GRCh37	12	120554416	120554416	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	74	343	0	ENST00000229340.5:c.39C>G	p.Ile13Met	p.I13M	ENST00000229340	NM_006861.6	13	atC/atG																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911598	32911598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	23	244	0	ENST00000380152.3:c.3106G>C	p.Glu1036Gln	p.E1036Q	ENST00000380152		1036	Gaa/Caa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912225	32912225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	35	360	0	ENST00000380152.3:c.3733G>A	p.Glu1245Lys	p.E1245K	ENST00000380152		1245	Gag/Aag																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871597	35871597	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	20	264	0	ENST00000216797.5:c.906+3G>A		p.X302_splice	ENST00000216797	NM_020529.2	302																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675520	40675520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	93	686	0	ENST00000249776.8:c.301G>A	p.Ala101Thr	p.A101T	ENST00000249776	NM_033286.3	101	Gca/Aca																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457287	67457287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	137	869	0	ENST00000327367.4:c.261C>G	p.Ile87Met	p.I87M	ENST00000327367	NM_005902.3	87	atC/atG																																																																														
BLM	641	MSKCC	GRCh37	15	91295106	91295106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	14	215	0	ENST00000355112.3:c.889G>A	p.Asp297Asn	p.D297N	ENST00000355112	NM_000057.2	297	Gat/Aat																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644823	67644823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	54	519	0	ENST00000264010.4:c.88G>A	p.Glu30Lys	p.E30K	ENST00000264010	NM_006565.3	30	Gaa/Aaa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341251	89341251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	79	813	0	ENST00000301030.4:c.7684G>A	p.Glu2562Lys	p.E2562K	ENST00000301030	NM_001256183.1	2562	Gag/Aag																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217917	7217917	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	38	241	0	ENST00000380728.2:c.95-1G>A		p.X32_splice	ENST00000380728		32																																																																															
STAT5B	6777	MSKCC	GRCh37	17	40384156	40384156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	27	533	0	ENST00000293328.3:c.-10-1G>C		p.X4_splice	ENST00000293328	NM_012448.3	4																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678029	58678029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	95	459	0	ENST00000305921.3:c.254C>T	p.Ser85Leu	p.S85L	ENST00000305921	NM_003620.3	85	tCg/tTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119972	70119972	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1348433812		P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	126	573	0	ENST00000245479.2:c.974C>T	p.Ala325Val	p.A325V	ENST00000245479	NM_000346.3	325	gCg/gTg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732502	74732502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	36	194	0	ENST00000359995.5:c.407C>T	p.Ser136Phe	p.S136F	ENST00000359995	NM_001195427.1	136	tCc/tTc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78519590	78519590	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	51	307	2	ENST00000306801.3:c.161G>A	p.Arg54Gln	p.R54Q	ENST00000306801	NM_020761.2	54	cGg/cAg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4123815	4123815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	84	979	0	ENST00000262948.5:c.58G>T	p.Glu20Ter	p.E20*	ENST00000262948	NM_030662.3	20	Gag/Tag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50917131	50917131	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	163	1046	0	ENST00000440232.2:c.2383G>C	p.Glu795Gln	p.E795Q	ENST00000440232	NM_002691.3	795	Gag/Cag																																																																														
ALK	238	MSKCC	GRCh37	2	30143108	30143108	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	116	1383	0	ENST00000389048.3:c.418C>T	p.Gln140Ter	p.Q140*	ENST00000389048	NM_004304.4	140	Cag/Tag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285805	198285805	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	332	742	0	ENST00000335508.6:c.248G>C	p.Gly83Ala	p.G83A	ENST00000335508	NM_012433.2	83	gGa/gCa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113257	209113257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	32	409	0	ENST00000345146.2:c.250G>A	p.Glu84Lys	p.E84K	ENST00000345146	NM_005896.2	84	Gag/Aag																																																																														
SRC	6714	MSKCC	GRCh37	20	36012684	36012684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	42	291	1	ENST00000358208.4:c.128C>T	p.Ser43Leu	p.S43L	ENST00000358208		43	tCg/tTg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279766	46279766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	149	749	0	ENST00000371998.3:c.3692G>A	p.Arg1231Lys	p.R1231K	ENST00000371998		1231	aGa/aAa																																																																														
NF2	4771	MSKCC	GRCh37	22	30035172	30035172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	42	508	0	ENST00000338641.4:c.334G>C	p.Glu112Gln	p.E112Q	ENST00000338641	NM_000268.3	112	Gag/Cag																																																																														
EP300	2033	MSKCC	GRCh37	22	41568524	41568524	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	20	315	0	ENST00000263253.7:c.4474G>T	p.Glu1492Ter	p.E1492*	ENST00000263253	NM_001429.3	1492	Gaa/Taa																																																																														
EP300	2033	MSKCC	GRCh37	22	41568605	41568605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	30	387	0	ENST00000263253.7:c.4555G>C	p.Glu1519Gln	p.E1519Q	ENST00000263253	NM_001429.3	1519	Gaa/Caa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37059008	37059008	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs748423430		P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	29	467	0	ENST00000231790.2:c.802G>C	p.Glu268Gln	p.E268Q	ENST00000231790	NM_000249.3	268	Gaa/Caa																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181396	38181396	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	73	472	0	ENST00000396334.3:c.409G>T	p.Glu137Ter	p.E137*	ENST00000396334	NM_002468.4	137	Gag/Tag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71037219	71037219	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	61	348	0	ENST00000318789.4:c.1072G>C	p.Asp358His	p.D358H	ENST00000318789	NM_032682.5	358	Gac/Cac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390135	89390135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	24	257	0	ENST00000336596.2:c.884C>T	p.Ser295Phe	p.S295F	ENST00000336596	NM_005233.5	295	tCt/tTt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198035	185198035	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1384908531		P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	21	354	0	ENST00000265026.3:c.2517C>G	p.Ile839Met	p.I839M	ENST00000265026	NM_004721.4	839	atC/atG																																																																														
KDR	3791	MSKCC	GRCh37	4	55958791	55958791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	37	691	0	ENST00000263923.4:c.3062C>T	p.Ser1021Leu	p.S1021L	ENST00000263923	NM_002253.2	1021	tCg/tTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55958823	55958870	+	protein_altering_variant	In_Frame_Del	DEL	GAAGCTGTAACAGATGAGATGCTCCAAGGTCAGGAAGTCCTTATACAG	GAAGCTGTAACAGATGAGATGCTCCAAGGTCAGGAAGTCCTTATACAG	ATACAA			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	30	689	2	ENST00000263923.4:c.2983_3030delinsTTGTAT	p.Lys997_Phe1010del	p.K997_F1010del	ENST00000263923	NM_002253.2	995	CTGTATAAGGACTTCCTGACCTTGGAGCATCTCATCTGTTACAGCTTC/TTGTAT																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197085	26197085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	19	353	0	ENST00000356476.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000356476		132	Cgt/Tgt																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250440	26250440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	45	352	0	ENST00000446824.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000446824	NM_021018.2	132	Cgc/Tgc																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839778	27839778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	98	487	0	ENST00000328488.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000328488	NM_003533.2	106	Gag/Aag																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839889	27839889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	67	541	0	ENST00000328488.2:c.205C>G	p.Gln69Glu	p.Q69E	ENST00000328488	NM_003533.2	69	Cag/Gag																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816480	32816480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	90	1029	0	ENST00000354258.4:c.1695C>G	p.Phe565Leu	p.F565L	ENST00000354258	NM_000593.5	565	ttC/ttG																																																																														
TAP1	6890	MSKCC	GRCh37	6	32820190	32820190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757711839		P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	136	786	0	ENST00000354258.4:c.868C>T	p.Leu290Phe	p.L290F	ENST00000354258	NM_000593.5	290	Ctc/Ttc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199864	138199864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	67	577	0	ENST00000237289.4:c.1282G>C	p.Glu428Gln	p.E428Q	ENST00000237289	NM_001270507.1	428	Gag/Cag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150424	157150424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	73	686	0	ENST00000346085.5:c.1606C>T	p.His536Tyr	p.H536Y	ENST00000346085	NM_020732.3	536	Cat/Tat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522635	106522635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	46	309	0	ENST00000359195.3:c.2612C>T	p.Ser871Leu	p.S871L	ENST00000359195	NM_002649.2	871	tCa/tTa																																																																														
MET	4233	MSKCC	GRCh37	7	116414509	116414509	+	intron_variant	Intron	SNP	G	G	C			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	62	542	0	ENST00000397752.3:c.3029-426G>C		p.*1010*	ENST00000397752	NM_000245.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151853131	151853131	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	86	366	0	ENST00000262189.6:c.11824C>G	p.Leu3942Val	p.L3942V	ENST00000262189	NM_170606.2	3942	Cta/Gta																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205058	38205058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142206759		P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	45	437	0	ENST00000317025.8:c.632G>A	p.Arg211His	p.R211H	ENST00000317025	NM_023034.1	211	cGc/cAc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239692	53239692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	110	475	0	ENST00000375401.3:c.1650G>T	p.Lys550Asn	p.K550N	ENST00000375401	NM_004187.3	550	aaG/aaT																																																																														
BLM	641	MSKCC	GRCh37	15	91337480	91337480	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs764965627		P-0019007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	28	187	0	ENST00000355112.3:c.3103G>C	p.Glu1035Gln	p.E1035Q	ENST00000355112	NM_000057.2	1035	Gaa/Caa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022194-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			52	37	159	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0022194-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	179	333	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
TET1	80312	MSKCC	GRCh37	10	70451522	70451522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022194-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	164	731	0	ENST00000373644.4:c.6362C>T	p.Ser2121Phe	p.S2121F	ENST00000373644	NM_030625.2	2121	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	29416646	29416646	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs544926207		P-0022194-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	100	403	1	ENST00000389048.3:c.4307G>A	p.Arg1436His	p.R1436H	ENST00000389048	NM_004304.4	1436	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022194-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	333	817	5	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																														
TET1	80312	MSKCC	GRCh37	10	70450885	70450885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022194-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	108	568	1	ENST00000373644.4:c.5725C>T	p.Pro1909Ser	p.P1909S	ENST00000373644	NM_030625.2	1909	Cct/Tct																																																																														
TET1	80312	MSKCC	GRCh37	10	70450901	70450901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022194-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	99	579	1	ENST00000373644.4:c.5741C>T	p.Ser1914Phe	p.S1914F	ENST00000373644	NM_030625.2	1914	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427746	49427746	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0022194-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			198	344	674	0	ENST00000301067.7:c.10742T>G	p.Val3581Gly	p.V3581G	ENST00000301067	NM_003482.3	3581	gTc/gGc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879598	37879599	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCG			P-0022194-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	263	676	0	ENST00000269571.5:c.1973_1974insCCG	p.Val658_Val659insArg	p.V658_V659insR	ENST00000269571		658	gtg/gtCCGg																																																																														
SMO	6608	MSKCC	GRCh37	7	128843243	128843243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1173715127		P-0022194-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	246	592	1	ENST00000249373.3:c.350G>A	p.Arg117His	p.R117H	ENST00000249373	NM_005631.4	117	cGc/cAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798755	135798755	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022194-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			21	223	273	0	ENST00000298552.3:c.488C>G	p.Ser163Ter	p.S163*	ENST00000298552	NM_001162426.1	163	tCa/tGa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803114	1803114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022194-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	108	533	0	ENST00000260795.2:c.466C>T	p.Pro156Ser	p.P156S	ENST00000260795		156	Ccc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	63	195	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0033598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	101	405	1	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446729	49446729	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376475904		P-0033598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	109	454	2	ENST00000301067.7:c.1081G>A	p.Val361Ile	p.V361I	ENST00000301067	NM_003482.3	361	Gtt/Att																																																																														
YES1	7525	MSKCC	GRCh37	18	745999	745999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	104	484	0	ENST00000314574.4:c.523C>T	p.Pro175Ser	p.P175S	ENST00000314574	NM_005433.3	175	Cct/Tct																																																																														
STK11	6794	MSKCC	GRCh37	19	1220391	1220392	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACGGCC			P-0033598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	262	665	0	ENST00000326873.7:c.485_490dup	p.Gly163_Leu164insHisGly	p.G163_L164insHG	ENST00000326873	NM_000455.4	162	gac/gACGGCCac																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375269	15375275	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCAGT	GCCCAGT	-			P-0033598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	54	653	0	ENST00000263377.2:c.1152_1158del	p.Leu385TyrfsTer14	p.L385Yfs*14	ENST00000263377	NM_058243.2	384	gcACTGGGC/gc																																																																														
CD79A	973	MSKCC	GRCh37	19	42384977	42384977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782624281		P-0033598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	238	540	0	ENST00000221972.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000221972	NM_021601.3	204	cGg/cAg																																																																														
BTK	695	MSKCC	GRCh37	X	100611814	100611814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	122	542	1	ENST00000308731.7:c.1307C>T	p.Ser436Phe	p.S436F	ENST00000308731	NM_000061.2	436	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0033800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	167	717	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SDHB	6390	MSKCC	GRCh37	1	17349180	17349180	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138996609		P-0033800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	78	564	0	ENST00000375499.3:c.688C>T	p.Arg230Cys	p.R230C	ENST00000375499	NM_003000.2	230	Cgc/Tgc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121935	2121947	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGTGGGGCC	GGTGAGTGGGGCC	-			P-0033800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	123	709	0	ENST00000219476.3:c.2097+2_2097+14del		p.X699_splice	ENST00000219476	NM_000548.3	699																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137525611	137525611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	49	537	0	ENST00000367739.4:c.404G>C	p.Arg135Thr	p.R135T	ENST00000367739	NM_000416.2	135	aGa/aCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	59	588	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	61	661	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538904	187538904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	55	473	0	ENST00000441802.2:c.8836G>A	p.Asp2946Asn	p.D2946N	ENST00000441802	NM_005245.3	2946	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	101	909	6	ENST00000269305.4:c.454C>A	p.Pro152Thr	p.P152T	ENST00000269305	NM_001126112.2	152	Ccg/Acg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539435	187539435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	57	557	0	ENST00000441802.2:c.8305G>A	p.Glu2769Lys	p.E2769K	ENST00000441802	NM_005245.3	2769	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539741	187539741	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1423289460		P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	64	556	0	ENST00000441802.2:c.7999G>A	p.Glu2667Lys	p.E2667K	ENST00000441802	NM_005245.3	2667	Gaa/Aaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435936	56435936	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	130	504	0	ENST00000407977.2:c.1201G>T	p.Glu401Ter	p.E401*	ENST00000407977		401	Gag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251785	212251785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	52	390	0	ENST00000342788.4:c.3274C>A	p.Pro1092Thr	p.P1092T	ENST00000342788	NM_005235.2	1092	Cct/Act																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538291	187538291	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	77	725	0	ENST00000441802.2:c.8943G>C	p.Lys2981Asn	p.K2981N	ENST00000441802	NM_005245.3	2981	aaG/aaC																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538898	187538898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	50	460	0	ENST00000441802.2:c.8842G>A	p.Glu2948Lys	p.E2948K	ENST00000441802	NM_005245.3	2948	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539378	187539378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	55	579	0	ENST00000441802.2:c.8362G>C	p.Glu2788Gln	p.E2788Q	ENST00000441802	NM_005245.3	2788	Gag/Cag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539495	187539495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	81	549	0	ENST00000441802.2:c.8245G>A	p.Glu2749Lys	p.E2749K	ENST00000441802	NM_005245.3	2749	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539747	187539747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	68	539	0	ENST00000441802.2:c.7993G>C	p.Glu2665Gln	p.E2665Q	ENST00000441802	NM_005245.3	2665	Gaa/Caa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539810	187539810	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	67	584	0	ENST00000441802.2:c.7930G>T	p.Glu2644Ter	p.E2644*	ENST00000441802	NM_005245.3	2644	Gag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539975	187539975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	76	542	0	ENST00000441802.2:c.7765G>A	p.Asp2589Asn	p.D2589N	ENST00000441802	NM_005245.3	2589	Gac/Aac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540019	187540019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	75	564	0	ENST00000441802.2:c.7721G>C	p.Gly2574Ala	p.G2574A	ENST00000441802	NM_005245.3	2574	gGa/gCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540749	187540749	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	59	507	0	ENST00000441802.2:c.6991G>C	p.Asp2331His	p.D2331H	ENST00000441802	NM_005245.3	2331	Gat/Cat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540872	187540872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	56	447	0	ENST00000441802.2:c.6868G>A	p.Val2290Met	p.V2290M	ENST00000441802	NM_005245.3	2290	Gtg/Atg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541076	187541076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	50	480	0	ENST00000441802.2:c.6664G>C	p.Asp2222His	p.D2222H	ENST00000441802	NM_005245.3	2222	Gac/Cac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541405	187541405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	50	519	0	ENST00000441802.2:c.6335G>C	p.Arg2112Thr	p.R2112T	ENST00000441802	NM_005245.3	2112	aGa/aCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541421	187541421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	48	528	0	ENST00000441802.2:c.6319G>A	p.Asp2107Asn	p.D2107N	ENST00000441802	NM_005245.3	2107	Gac/Aac																																																																														
PMS2	5395	MSKCC	GRCh37	7	6043376	6043376	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	14	95	0	ENST00000265849.7:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000265849	NM_000535.5	100	Cag/Tag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932540	39932541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	96	897	0	ENST00000378444.4:c.2058dup	p.Pro687ThrfsTer53	p.P687Tfs*53	ENST00000378444	NM_001123385.1	686	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	166	351	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs876658153		P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	69	282	0	ENST00000371953.3:c.209+1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
SMO	6608	MSKCC	GRCh37	7	128852158	128852158	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141955434		P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	84	502	0	ENST00000249373.3:c.2230C>T	p.Pro744Ser	p.P744S	ENST00000249373	NM_005631.4	744	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	204	486	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294576	1294576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	127	299	0	ENST00000310581.5:c.425G>A	p.Arg142His	p.R142H	ENST00000310581	NM_198253.2	142	cGc/cAc																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66511702	66511702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	99	231	0	ENST00000358598.2:c.162T>G	p.Phe54Leu	p.F54L	ENST00000358598	NM_212471.2	54	ttT/ttG																																																																														
KDR	3791	MSKCC	GRCh37	4	55976857	55976857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	50	440	0	ENST00000263923.4:c.1055C>A	p.Ala352Glu	p.A352E	ENST00000263923	NM_002253.2	352	gCg/gAg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781518	135781518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	83	216	0	ENST00000298552.3:c.1447T>C	p.Ser483Pro	p.S483P	ENST00000298552	NM_001162426.1	483	Tct/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519982		P-0041595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	320	697	0	ENST00000269305.4:c.724T>G	p.Cys242Gly	p.C242G	ENST00000269305	NM_001126112.2	242	Tgc/Ggc																																																																														
APC	324	MSKCC	GRCh37	5	112173847	112173848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0041595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	144	384	0	ENST00000257430.4:c.2563_2564dup	p.Arg856AsnfsTer6	p.R856Nfs*6	ENST00000257430	NM_000038.5	852	-/GA																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0041595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	90	213	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
ATR	545	MSKCC	GRCh37	3	142242849	142242849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	156	477	0	ENST00000350721.4:c.4138G>T	p.Asp1380Tyr	p.D1380Y	ENST00000350721	NM_001184.3	1380	Gat/Tat																																																																														
SRC	6714	MSKCC	GRCh37	20	36012701	36012701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	397	159	0	ENST00000358208.4:c.145G>A	p.Gly49Ser	p.G49S	ENST00000358208		49	Ggc/Agc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750575	57750575	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	158	429	0	ENST00000274289.3:c.1893A>C	p.Lys631Asn	p.K631N	ENST00000274289	NM_006622.3	631	aaA/aaC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	118	208	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			782	398	419	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	66	139	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			712	220	388	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160588	56160588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	179	287	0	ENST00000399503.3:c.862C>T	p.Arg288Ter	p.R288*	ENST00000399503	NM_005921.1	288	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120185	70120185	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	286	194	0	ENST00000245479.2:c.1187A>T	p.His396Leu	p.H396L	ENST00000245479	NM_000346.3	396	cAc/cTc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120196	70120196	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	297	213	0	ENST00000245479.2:c.1198G>T	p.Glu400Ter	p.E400*	ENST00000245479	NM_000346.3	400	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112173603	112173603	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	198	388	0	ENST00000257430.4:c.2314del	p.Thr772LeufsTer5	p.T772Lfs*5	ENST00000257430	NM_000038.5	771	gAa/ga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276788	15276788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	268	403	0	ENST00000263388.2:c.5477G>T	p.Cys1826Phe	p.C1826F	ENST00000263388	NM_000435.2	1826	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	289	407	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873695	35873695	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	235	393	0	ENST00000303115.3:c.651G>C	p.Trp217Cys	p.W217C	ENST00000303115	NM_002185.3	217	tgG/tgC																																																																														
RET	5979	MSKCC	GRCh37	10	43604494	43604494	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762472027		P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	212	408	0	ENST00000355710.3:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000355710	NM_020975.4	360	cGg/cAg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94163109	94163109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	374	486	0	ENST00000323929.3:c.2038G>A	p.Val680Ile	p.V680I	ENST00000323929	NM_005591.3	680	Gta/Ata																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18762517	18762517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	256	436	0	ENST00000266497.5:c.4013A>G	p.Tyr1338Cys	p.Y1338C	ENST00000266497		1338	tAc/tGc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589808	28589808	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs568745490		P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	236	430	0	ENST00000241453.7:c.2572G>A	p.Glu858Lys	p.E858K	ENST00000241453	NM_004119.2	858	Gaa/Aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48586250	48586250	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	280	340	0	ENST00000342988.3:c.919G>T	p.Glu307Ter	p.E307*	ENST00000342988	NM_005359.5	307	Gag/Tag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115421	115115422	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTTTGCAAAAGGGTTGTTGTCTATTTTTAACTGGGTTAT			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	151	483	0	ENST00000257566.3:c.865_904dup	p.Gly302AspfsTer38	p.G302Dfs*38	ENST00000257566	NM_016569.3	302	ggt/gATAACCCAGTTAAAAATAGACAACAACCCTTTTGCAAAAGgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578220	7578221	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TTCTGTCATCCAAATACTCCACACG			P-0004249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	267	476	0	ENST00000269305.4:c.604_628dup	p.Asn210ThrfsTer7	p.N210Tfs*7	ENST00000269305	NM_001126112.2	210	aac/aCGTGTGGAGTATTTGGATGACAGAAac																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497346	149497346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75748462		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	141	495	0	ENST00000261799.4:c.2972G>A	p.Arg991His	p.R991H	ENST00000261799	NM_002609.3	991	cGc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419930	41419930	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	119	609	0	ENST00000373198.4:c.391del	p.Gln131LysfsTer17	p.Q131Kfs*17	ENST00000373198	NM_133170.3	131	Caa/aa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	183	614	1	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	125	316	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216560	2216560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777525091		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	245	625	0	ENST00000398665.3:c.2204C>T	p.Thr735Met	p.T735M	ENST00000398665	NM_032482.2	735	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112175166	112175166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371113837		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	112	300	0	ENST00000257430.4:c.3875C>T	p.Thr1292Met	p.T1292M	ENST00000257430	NM_000038.5	1292	aCg/aTg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	144	505	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89857935	89857935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11646374		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	125	493	0	ENST00000389301.3:c.1235C>T	p.Ala412Val	p.A412V	ENST00000389301	NM_000135.2	412	gCg/gTg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78923252	78923252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	65	561	2	ENST00000306801.3:c.3275C>T	p.Ala1092Val	p.A1092V	ENST00000306801	NM_020761.2	1092	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	60	296	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	159	572	0	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346884	73346884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	347	537	3	ENST00000377767.4:c.1333del	p.Ser445HisfsTer20	p.S445Hfs*20	ENST00000377767	NM_014953.3	445	Tca/ca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	69	347	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	121	610	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37061889	37061889	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064793519		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	150	590	2	ENST00000231790.2:c.973C>T	p.Arg325Trp	p.R325W	ENST00000231790	NM_000249.3	325	Cgg/Tgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	151	669	6	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	134	395	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274794	123274794	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913478		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	143	496	0	ENST00000358487.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000358487	NM_000141.4	375	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	211	630	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	104	617	2	ENST00000575354.2:c.1526del	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																														
TET2	54790	MSKCC	GRCh37	4	106194030	106194030	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1298652864		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	213	552	0	ENST00000380013.4:c.4492C>T	p.Arg1498Cys	p.R1498C	ENST00000380013	NM_001127208.2	1498	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	43	137	1	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157488293	157488293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750810656		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	151	337	0	ENST00000346085.5:c.2999C>T	p.Ala1000Val	p.A1000V	ENST00000346085	NM_020732.3	1000	gCg/gTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761345552		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	102	525	6	ENST00000575354.2:c.3347dup	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777635	9777635	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773473376		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	103	497	0	ENST00000377346.4:c.971G>A	p.Arg324His	p.R324H	ENST00000377346	NM_005026.3	324	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105938	27105938	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs750044693		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	98	371	0	ENST00000324856.7:c.5549A>G	p.Asp1850Gly	p.D1850G	ENST00000324856	NM_006015.4	1850	gAc/gGc																																																																														
IL10	3586	MSKCC	GRCh37	1	206945758	206945758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	118	393	0	ENST00000423557.1:c.23G>A	p.Cys8Tyr	p.C8Y	ENST00000423557	NM_000572.2	8	tGt/tAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989523	212989523	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	186	653	0	ENST00000342788.4:c.188T>C	p.Leu63Pro	p.L63P	ENST00000342788	NM_005235.2	63	cTg/cCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928301	178928301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	135	499	0	ENST00000263967.3:c.1487C>T	p.Ala496Val	p.A496V	ENST00000263967	NM_006218.2	496	gCc/gTc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430444	181430444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	150	614	0	ENST00000325404.1:c.296C>T	p.Ala99Val	p.A99V	ENST00000325404	NM_003106.3	99	gCg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1266594	1266594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	112	589	0	ENST00000310581.5:c.2639C>T	p.Ala880Val	p.A880V	ENST00000310581	NM_198253.2	880	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112128203	112128203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	218	584	1	ENST00000257430.4:c.706C>T	p.Gln236Ter	p.Q236*	ENST00000257430	NM_000038.5	236	Cag/Tag																																																																														
IRF4	3662	MSKCC	GRCh37	6	401501	401501	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs771669183		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	71	460	0	ENST00000380956.4:c.823C>T	p.Arg275Trp	p.R275W	ENST00000380956	NM_001195286.1	275	Cgg/Tgg																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158714	26158714	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	53	104	0	ENST00000289316.2:c.317A>G	p.Glu106Gly	p.E106G	ENST00000289316	NM_138720.2	106	gAg/gGg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710608	117710608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	216	570	0	ENST00000368508.3:c.1664A>G	p.His555Arg	p.H555R	ENST00000368508	NM_002944.2	555	cAc/cGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873383	151873383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	167	576	0	ENST00000262189.6:c.9155C>T	p.Pro3052Leu	p.P3052L	ENST00000262189	NM_170606.2	3052	cCt/cTt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371972	55371972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	54	207	0	ENST00000297316.4:c.662C>T	p.Thr221Met	p.T221M	ENST00000297316	NM_022454.3	221	aCg/aTg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570292	87570292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1463968979		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	130	545	0	ENST00000277120.3:c.2032G>A	p.Ala678Thr	p.A678T	ENST00000277120		678	Gcg/Acg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760520	133760520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1240583398		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	76	528	0	ENST00000318560.5:c.2843C>T	p.Pro948Leu	p.P948L	ENST00000318560	NM_005157.4	948	cCc/cTc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771818	135771818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	183	692	0	ENST00000298552.3:c.3299G>A	p.Ser1100Asn	p.S1100N	ENST00000298552	NM_001162426.1	1100	aGc/aAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925366	114925366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	168	693	0	ENST00000543371.1:c.1444C>A	p.Pro482Thr	p.P482T	ENST00000543371	NM_001198531.1	482	Cca/Aca																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575134	64575134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057521110		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	100	467	0	ENST00000337652.1:c.688G>A	p.Gly230Arg	p.G230R	ENST00000337652	NM_130803.2	230	Gga/Aga																																																																														
PAK1	5058	MSKCC	GRCh37	11	77064603	77064603	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767363828		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	154	578	0	ENST00000356341.3:c.814C>T	p.Arg272Trp	p.R272W	ENST00000356341	NM_002576.4	272	Cgg/Tgg																																																																														
EED	8726	MSKCC	GRCh37	11	85961377	85961377	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772993565		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	171	485	0	ENST00000263360.6:c.154C>T	p.Arg52Cys	p.R52C	ENST00000263360	NM_003797.3	52	Cgc/Tgc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195289	102195289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186307109		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	268	813	1	ENST00000263464.3:c.49G>A	p.Ala17Thr	p.A17T	ENST00000263464	NM_001165.4	17	Gcc/Acc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195395	102195395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762397304		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	238	765	0	ENST00000263464.3:c.155G>A	p.Arg52His	p.R52H	ENST00000263464	NM_001165.4	52	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445338	49445338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	107	374	1	ENST00000301067.7:c.2128C>A	p.Pro710Thr	p.P710T	ENST00000301067	NM_003482.3	710	Cca/Aca																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987168	36987168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1160967358		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	70	287	0	ENST00000354822.5:c.521G>A	p.Gly174Asp	p.G174D	ENST00000354822	NM_001079668.2	174	gGc/gAc																																																																														
AKT1	207	MSKCC	GRCh37	14	105243083	105243083	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1396308032		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	107	599	0	ENST00000349310.3:c.200G>A	p.Arg67Gln	p.R67Q	ENST00000349310	NM_001014432.1	67	cGg/cAg																																																																														
MGA	23269	MSKCC	GRCh37	15	41988331	41988331	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139403711		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	216	819	0	ENST00000219905.7:c.1123G>A	p.Gly375Arg	p.G375R	ENST00000219905	NM_001164273.1	375	Gga/Aga																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14026059	14026059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753728949		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	142	372	0	ENST00000311895.7:c.1019G>A	p.Arg340Gln	p.R340Q	ENST00000311895	NM_005236.2	340	cGa/cAa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865783	56865783	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148421556		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	228	744	3	ENST00000308159.5:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000308159	NM_014669.4	372	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992222	72992222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	129	754	0	ENST00000268489.5:c.1823G>A	p.Ser608Asn	p.S608N	ENST00000268489	NM_006885.3	608	aGc/aAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969933	81969933	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs752209691		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	165	718	3	ENST00000359376.3:c.3002G>A	p.Arg1001His	p.R1001H	ENST00000359376	NM_002661.3	1001	cGc/cAc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89839744	89839744	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs965355095		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	159	658	1	ENST00000389301.3:c.1949T>C	p.Leu650Pro	p.L650P	ENST00000389301	NM_000135.2	650	cTg/cCg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489825	40489825	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	202	654	1	ENST00000264657.5:c.601C>T	p.Gln201Ter	p.Q201*	ENST00000264657	NM_139276.2	201	Cag/Tag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435828	56435828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs995358248		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	133	443	0	ENST00000407977.2:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000407977		437	Cgg/Tgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216740	2216740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1285057389		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	138	355	0	ENST00000398665.3:c.2384C>T	p.Pro795Leu	p.P795L	ENST00000398665	NM_032482.2	795	cCg/cTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5245810	5245810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	147	551	0	ENST00000357368.4:c.965C>T	p.Ala322Val	p.A322V	ENST00000357368	NM_002850.3	322	gCg/gTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7125379	7125379	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778982272		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	245	758	1	ENST00000302850.5:c.3173C>T	p.Thr1058Met	p.T1058M	ENST00000302850	NM_000208.2	1058	aCg/aTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291058	10291058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	87	427	0	ENST00000340748.4:c.413C>T	p.Pro138Leu	p.P138L	ENST00000340748		138	cCc/cTc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279645	18279645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	130	536	2	ENST00000222254.8:c.1918C>T	p.Arg640Trp	p.R640W	ENST00000222254	NM_005027.3	640	Cgg/Tgg																																																																														
CIC	23152	MSKCC	GRCh37	19	42793502	42793502	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755293924		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	147	641	1	ENST00000575354.2:c.1304C>T	p.Thr435Met	p.T435M	ENST00000575354	NM_015125.3	435	aCg/aTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855573	45855573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746618110		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	86	562	3	ENST00000391945.4:c.2084G>A	p.Arg695His	p.R695H	ENST00000391945	NM_000400.3	695	cGc/cAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909524	50909524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	175	712	0	ENST00000440232.2:c.1328G>A	p.Arg443Gln	p.R443Q	ENST00000440232	NM_002691.3	443	cGg/cAg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017802	31017802	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs780662350		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	115	593	0	ENST00000375687.4:c.664G>A	p.Glu222Lys	p.E222K	ENST00000375687	NM_015338.5	222	Gag/Aag																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650388	48650388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	150	382	0	ENST00000376670.3:c.358G>A	p.Ala120Thr	p.A120T	ENST00000376670	NM_002049.3	120	Gcc/Acc																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123499636	123499636	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs111033623		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	177	330	0	ENST00000371139.4:c.163C>T	p.Arg55Ter	p.R55*	ENST00000371139	NM_001114937.2	55	Cga/Tga																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652118	36652118	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	146	536	0	ENST00000244741.5:c.243del	p.Arg83GlyfsTer65	p.R83Gfs*65	ENST00000244741	NM_000389.4	80	acG/ac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373950	118373951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	145	710	0	ENST00000534358.1:c.7349dup	p.Leu2450PhefsTer10	p.L2450Ffs*10	ENST00000534358	NM_005933.3	2448	tct/tcTt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940552	49940553	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	125	746	0	ENST00000296474.3:c.490_491del	p.Phe164LeufsTer5	p.F164Lfs*5	ENST00000296474	NM_002447.2	164	TTc/c																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914422	32914422	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	281	877	1	ENST00000380152.3:c.5934del	p.Phe1978LeufsTer26	p.F1978Lfs*26	ENST00000380152		1977	aTt/at																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972893	32972893	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	136	386	0	ENST00000380152.3:c.10248del	p.Lys3416AsnfsTer11	p.K3416Nfs*11	ENST00000380152		3415	Aaa/aa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1057518664		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	49	221	2	ENST00000331920.6:c.114del	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																														
CBFB	865	MSKCC	GRCh37	16	67063358	67063359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	101	411	0	ENST00000412916.2:c.54dup	p.Arg19Ter	p.R19*	ENST00000412916		16	-/T																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532709	187532710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	167	664	0	ENST00000441802.2:c.9683dup	p.Val3229CysfsTer3	p.V3229Cfs*3	ENST00000441802	NM_005245.3	3228	cct/ccCt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32165216	32165216	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs767972771		P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	128	492	1	ENST00000375023.3:c.4912del	p.Leu1638CysfsTer68	p.L1638Cfs*68	ENST00000375023	NM_004557.3	1638	Ctg/tg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829895	72829895	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	164	821	1	ENST00000268489.5:c.6686del	p.Pro2229LeufsTer26	p.P2229Lfs*26	ENST00000268489	NM_006885.3	2229	cCt/ct																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375459	40375459	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	215	1201	0	ENST00000293328.3:c.491del	p.Lys164SerfsTer17	p.K164Sfs*17	ENST00000293328	NM_012448.3	164	aAg/ag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931452	131931453	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	104	409	0	ENST00000265335.6:c.2164_2165del	p.Lys722GlyfsTer5	p.K722Gfs*5	ENST00000265335		719	ctAAaa/ctaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261245	16261246	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	90	349	0	ENST00000375759.3:c.8516dup	p.Ala2840GlyfsTer7	p.A2840Gfs*7	ENST00000375759	NM_015001.2	2837	atc/atCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	168	281	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	206	423	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692884	89692884	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121909222		P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	316	188	1	ENST00000371953.3:c.368A>G	p.His123Arg	p.H123R	ENST00000371953	NM_000314.4	123	cAc/cGc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411492	63411492	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	358	391	0	ENST00000330258.3:c.1675G>T	p.Glu559Ter	p.E559*	ENST00000330258	NM_152424.3	559	Gaa/Taa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603046	48603077	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGGCGGCTACTGCACAAGCTGCAGCAGCTG	GCAGGCGGCTACTGCACAAGCTGCAGCAGCTG	-			P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	214	337	0	ENST00000342988.3:c.1347_1378del	p.Gln449HisfsTer34	p.Q449Hfs*34	ENST00000342988	NM_005359.5	449	caGCAGGCGGCTACTGCACAAGCTGCAGCAGCTGcc/cacc																																																																														
APC	324	MSKCC	GRCh37	5	112175779	112175780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	162	314	0	ENST00000257430.4:c.4490dup	p.Asp1498ArgfsTer16	p.D1498Rfs*16	ENST00000257430	NM_000038.5	1496	-/C																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	131	196	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	501	455	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907131	32907131	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1616	671	552	0	ENST00000380152.3:c.1516T>G	p.Phe506Val	p.F506V	ENST00000380152		506	Ttc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	10	513	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	15	527	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	117	364	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0007683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	225	261	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0007683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	165	347	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137779	64137779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	129	502	0	ENST00000334205.4:c.1880A>G	p.Lys627Arg	p.K627R	ENST00000334205	NM_003942.2	627	aAa/aGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	316	261	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	315	248	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	206	156	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972695	25972695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1249025549		P-0007809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	496	318	0	ENST00000435504.4:c.1730C>T	p.Ala577Val	p.A577V	ENST00000435504		577	gCc/gTc																																																																														
ALK	238	MSKCC	GRCh37	2	30143440	30143440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			9	117	62	0	ENST00000389048.3:c.86C>T	p.Ala29Val	p.A29V	ENST00000389048	NM_004304.4	29	gCg/gTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280061	66280061	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1254027522		P-0007809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	419	322	0	ENST00000273854.3:c.1628G>A	p.Arg543His	p.R543H	ENST00000273854	NM_004439.5	543	cGt/cAt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129141	152129141	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	364	326	0	ENST00000206249.3:c.94A>C	p.Lys32Gln	p.K32Q	ENST00000206249	NM_000125.3	32	Aag/Cag																																																																														
HGF	3082	MSKCC	GRCh37	7	81346641	81346641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	296	286	0	ENST00000222390.5:c.1312A>G	p.Asn438Asp	p.N438D	ENST00000222390	NM_000601.4	438	Aat/Gat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830502	72830502	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs756766481		P-0007809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	497	401	2	ENST00000268489.5:c.6079G>A	p.Asp2027Asn	p.D2027N	ENST00000268489	NM_006885.3	2027	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913527		P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	212	846	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913344		P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	76	808	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	55	733	1	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564764	86564764	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	77	1269	3	ENST00000274376.6:c.496G>T	p.Glu166Ter	p.E166*	ENST00000274376	NM_002890.2	166	Gag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133220049	133220049	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	66	960	3	ENST00000320574.5:c.4388T>C	p.Phe1463Ser	p.F1463S	ENST00000320574	NM_006231.2	1463	tTt/tCt																																																																														
APC	324	MSKCC	GRCh37	5	112154980	112154980	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	94	966	0	ENST00000257430.4:c.1251del	p.Cys417TrpfsTer37	p.C417Wfs*37	ENST00000257430	NM_000038.5	417	tgT/tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577069	7577075	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAGAT	CGGAGAT	-			P-0008540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	112	976	0	ENST00000269305.4:c.863_869del	p.Asn288ThrfsTer55	p.N288Tfs*55	ENST00000269305	NM_001126112.2	288	aATCTCCGc/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	257	350	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435780	56435780	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	206	223	0	ENST00000407977.2:c.1357G>T	p.Glu453Ter	p.E453*	ENST00000407977		453	Gaa/Taa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437577	52437578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	601	745	0	ENST00000460680.1:c.1583_1584insA	p.Lys529GlnfsTer8	p.K529Qfs*8	ENST00000460680	NM_004656.3	528	tcc/tcAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928065	178928088	+	inframe_deletion	In_Frame_Del	DEL	TACCTCATGGATTAGAAGATTTGC	TACCTCATGGATTAGAAGATTTGC	-			P-0009760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	145	351	0	ENST00000263967.3:c.1344_1367del	p.Pro449_Leu456del	p.P449_L456del	ENST00000263967	NM_006218.2	448	gTACCTCATGGATTAGAAGATTTGCtg/gtg																																																																														
APC	324	MSKCC	GRCh37	5	112175908	112175909	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0009760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	232	339	0	ENST00000257430.4:c.4619_4620del	p.Glu1540AlafsTer3	p.E1540Afs*3	ENST00000257430	NM_000038.5	1539	tcAGag/tcag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912655		P-0009903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	174	563	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0009903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	118	673	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175021	112175021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	103	459	0	ENST00000257430.4:c.3730C>T	p.Gln1244Ter	p.Q1244*	ENST00000257430	NM_000038.5	1244	Caa/Taa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143235903	143235903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	194	465	0	ENST00000262992.4:c.385G>A	p.Val129Ile	p.V129I	ENST00000262992	NM_001101669.1	129	Gtc/Atc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925329	114925329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	125	803	0	ENST00000543371.1:c.1407C>G	p.Cys469Trp	p.C469W	ENST00000543371	NM_001198531.1	469	tgC/tgG																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0010009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	101	311	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0010009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	163	338	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829404	72829404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200268844		P-0010009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1804	166	669	3	ENST00000268489.5:c.7177G>A	p.Ala2393Thr	p.A2393T	ENST00000268489	NM_006885.3	2393	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516435		P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	1012	482	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	472	355	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	121	288	2	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	814	594	1	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	766	563	1	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045839	180045839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140041761		P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	383	435	0	ENST00000261937.6:c.2932G>A	p.Asp978Asn	p.D978N	ENST00000261937	NM_182925.4	978	Gac/Aac																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27840041	27840041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1462	564	601	1	ENST00000328488.2:c.53G>A	p.Arg18His	p.R18H	ENST00000328488	NM_003533.2	18	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175542	112175543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	194	392	0	ENST00000257430.4:c.4252dup	p.Ile1418AsnfsTer5	p.I1418Nfs*5	ENST00000257430	NM_000038.5	1417	-/A																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261677	16261677	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745687072		P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	145	216	0	ENST00000375759.3:c.8942C>T	p.Thr2981Met	p.T2981M	ENST00000375759	NM_015001.2	2981	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112174577	112174577	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587783029		P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	172	501	0	ENST00000257430.4:c.3286C>T	p.Gln1096Ter	p.Q1096*	ENST00000257430	NM_000038.5	1096	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	125	303	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285670	46285670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	160	406	0	ENST00000334344.6:c.5030G>T	p.Arg1677Leu	p.R1677L	ENST00000334344	NM_152641.2	1677	cGa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs587780073		P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	122	413	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029511	16029511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	200	628	3	ENST00000268712.3:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000268712	NM_006311.3	507	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727129	40727129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	140	483	0	ENST00000373198.4:c.3835T>C	p.Phe1279Leu	p.F1279L	ENST00000373198	NM_133170.3	1279	Ttc/Ctc																																																																														
BARD1	580	MSKCC	GRCh37	2	215645697	215645697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	52	382	0	ENST00000260947.4:c.901G>A	p.Glu301Lys	p.E301K	ENST00000260947	NM_000465.2	301	Gag/Aag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024227751		P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	27	188	0	ENST00000305123.5:c.109G>A	p.Glu37Lys	p.E37K	ENST00000305123	NM_005544.2	37	Gag/Aag																																																																														
ATR	545	MSKCC	GRCh37	3	142286928	142286928	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751709684		P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	144	371	0	ENST00000350721.4:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000350721	NM_001184.3	43	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	22	148	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70404581	70404582	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	57	463	0	ENST00000373644.4:c.2095_2096delinsAT	p.Glu699Ile	p.E699I	ENST00000373644	NM_030625.2	699	GAa/ATa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	94	192	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561190	9561190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762286985		P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	76	438	0	ENST00000353224.5:c.592G>A	p.Asp198Asn	p.D198N	ENST00000353224	NM_177990.2	198	Gat/Aat																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317529	1317529	+	downstream_gene_variant	3'Flank	SNP	T	T	G			P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	95	485	0				ENST00000381566																																																																																	
FBXW7	55294	MSKCC	GRCh37	4	153253861	153253862	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	49	216	0	ENST00000281708.4:c.871dup	p.Tyr291LeufsTer26	p.Y291Lfs*26	ENST00000281708	NM_033632.3	291	tat/tTat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	151	333	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739803	41739803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1617	225	734	1	ENST00000242208.4:c.170C>T	p.Ala57Val	p.A57V	ENST00000242208	NM_002192.2	57	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	433	416	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	1082	482	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
INSR	3643	MSKCC	GRCh37	19	7172331	7172331	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758151117		P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	315	467	1	ENST00000302850.5:c.1238G>A	p.Arg413His	p.R413H	ENST00000302850	NM_000208.2	413	cGt/cAt																																																																														
PARK2	0	MSKCC	GRCh37	6	162622230	162622230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	543	510	0	ENST00000366898.1:c.467G>T	p.Arg156Ile	p.R156I	ENST00000366898	NM_004562.2	156	aGa/aTa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12650282	12650282	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	680	570	0	ENST00000251849.4:c.564T>G	p.Ser188Arg	p.S188R	ENST00000251849	NM_002880.3	188	agT/agG																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362519	118362519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	352	469	0	ENST00000534358.1:c.4880G>C	p.Cys1627Ser	p.C1627S	ENST00000534358	NM_005933.3	1627	tGt/tCt																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870831	12870831	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	284	168	0	ENST00000228872.4:c.58C>T	p.Gln20Ter	p.Q20*	ENST00000228872	NM_004064.3	20	Cag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287412	46287412	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	204	361	2	ENST00000334344.6:c.5272-1G>T		p.X1758_splice	ENST00000334344	NM_152641.2	1758																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188307	32188308	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0012680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	676	640	0	ENST00000375023.3:c.1033_1034del	p.Ser345TrpfsTer8	p.S345Wfs*8	ENST00000375023	NM_004557.3	345	AGt/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	44	443	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs730882025		P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	292	630	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	261	225	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	55	252	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29554307	29554307	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1590	137	552	0	ENST00000358273.4:c.2323G>C	p.Glu775Gln	p.E775Q	ENST00000358273	NM_001042492.2	775	Gag/Cag																																																																														
PAK7	0	MSKCC	GRCh37	20	9546560	9546560	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771840400		P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	42	323	0	ENST00000353224.5:c.1462C>T	p.Arg488Ter	p.R488*	ENST00000353224	NM_177990.2	488	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249440	153249440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	148	422	0	ENST00000281708.4:c.1338G>T	p.Trp446Cys	p.W446C	ENST00000281708	NM_033632.3	446	tgG/tgT																																																																														
PREX2	80243	MSKCC	GRCh37	8	69011937	69011937	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	177	514	0	ENST00000288368.4:c.2574A>C	p.Lys858Asn	p.K858N	ENST00000288368	NM_024870.2	858	aaA/aaC																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285809	87285809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1371476425		P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	33	434	1	ENST00000277120.3:c.146C>T	p.Ser49Phe	p.S49F	ENST00000277120		49	tCt/tTt																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804206	46804209	+	protein_altering_variant	In_Frame_Del	DEL	GCGG	GCGG	A			P-0014416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	132	489	0	ENST00000290295.7:c.798_801delinsT	p.Arg268del	p.R268del	ENST00000290295	NM_006361.5	266	aaCCGC/aaT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16203108	16203108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	151	503	0	ENST00000375759.3:c.816C>A	p.Ser272Arg	p.S272R	ENST00000375759	NM_015001.2	272	agC/agA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	432	573	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs886039484		P-0014754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	671	805	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																														
BARD1	580	MSKCC	GRCh37	2	215646173	215646173	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	167	449	0	ENST00000260947.4:c.425C>G	p.Ser142Ter	p.S142*	ENST00000260947	NM_000465.2	142	tCa/tGa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797242	32797242	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771932254		P-0014754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1482	274	701	1	ENST00000374899.4:c.1867C>T	p.Arg623Ter	p.R623*	ENST00000374899	NM_018833.2	623	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	210	481	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873066	134873066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762457030		P-0014774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	161	533	1	ENST00000398015.3:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000398015	NM_004441.4	457	cCg/cTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs759145490		P-0014774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	81	291	0	ENST00000222390.5:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000222390	NM_000601.4	424	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306713	41306713	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1357	81	526	0	ENST00000373198.4:c.946G>C	p.Gly316Arg	p.G316R	ENST00000373198	NM_133170.3	316	Ggg/Cgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52595892	52595892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	80	539	2	ENST00000394830.3:c.4023G>A	p.Met1341Ile	p.M1341I	ENST00000394830	NM_018313.4	1341	atG/atA																																																																														
BRAF	673	MSKCC	GRCh37	7	140481477	140481477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1328	145	640	2	ENST00000288602.6:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000288602	NM_004333.4	444	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11540652		P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	333	623	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913476		P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	97	584	1	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
ALK	238	MSKCC	GRCh37	2	30143044	30143044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	35	956	5	ENST00000389048.3:c.482C>T	p.Ala161Val	p.A161V	ENST00000389048	NM_004304.4	161	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175475	112175476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTTGAGA			P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	16	325	0	ENST00000257430.4:c.4185_4192dup	p.Ser1398IlefsTer20	p.S1398Ifs*20	ENST00000257430	NM_000038.5	1395	agt/agTTTTGAGAt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845970	156845970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	35	720	1	ENST00000524377.1:c.1600C>T	p.Pro534Ser	p.P534S	ENST00000524377	NM_002529.3	534	Cct/Tct																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100732	8100732	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs148835259		P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	114	789	0	ENST00000346208.3:c.706C>G	p.Pro236Ala	p.P236A	ENST00000346208		236	Ccc/Gcc																																																																														
POLE	5426	MSKCC	GRCh37	12	133256167	133256167	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1060500782		P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	22	569	0	ENST00000320574.5:c.494A>C	p.Lys165Thr	p.K165T	ENST00000320574	NM_006231.2	165	aAa/aCa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438148	56438148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	534	949	1	ENST00000407977.2:c.845G>A	p.Gly282Glu	p.G282E	ENST00000407977		282	gGg/gAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144027	11144027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	198	778	1	ENST00000344626.4:c.3608G>T	p.Arg1203Leu	p.R1203L	ENST00000344626	NM_003072.3	1203	cGc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112174172	112174173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGATAGTTT			P-0014908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	34	442	0	ENST00000257430.4:c.2883_2892dup	p.Asn965Ter	p.N965*	ENST00000257430	NM_000038.5	961	aat/aATGATAGTTTat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	157	318	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	162	314	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	151	407	2	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916143	9916143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762659685		P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	69	308	0	ENST00000330684.3:c.2146G>A	p.Ala716Thr	p.A716T	ENST00000330684	NM_001134407.1	716	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	108	173	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524631	187524631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	71	473	0	ENST00000441802.2:c.11049G>T	p.Leu3683Phe	p.L3683F	ENST00000441802	NM_005245.3	3683	ttG/ttT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	189	392	0	ENST00000269305.4:c.560-2A>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89349528	89349528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	62	497	1	ENST00000301030.4:c.3422G>A	p.Ser1141Asn	p.S1141N	ENST00000301030	NM_001256183.1	1141	aGc/aAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933368	39933368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	139	518	0	ENST00000378444.4:c.1231C>T	p.Arg411Trp	p.R411W	ENST00000378444	NM_001123385.1	411	Cgg/Tgg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577164	64577178	+	inframe_deletion	In_Frame_Del	DEL	TGTGGGCCCGATCCT	TGTGGGCCCGATCCT	-			P-0037474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	420	907	0	ENST00000337652.1:c.404_418del	p.Lys135_His139del	p.K135_H139del	ENST00000337652	NM_130803.2	135	aAGGATCGGGCCCACAtc/atc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024255	31024255	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760905906		P-0038805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	223	499	2	ENST00000375687.4:c.3740G>A	p.Arg1247His	p.R1247H	ENST00000375687	NM_015338.5	1247	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108199839	108199839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587779861		P-0026255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	34	236	0	ENST00000278616.4:c.7181C>T	p.Ser2394Leu	p.S2394L	ENST00000278616	NM_000051.3	2394	tCa/tTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374642	118374642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	29	249	0	ENST00000534358.1:c.8035G>A	p.Glu2679Lys	p.E2679K	ENST00000534358	NM_005933.3	2679	Gaa/Aaa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158626939	158626939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	56	382	0	ENST00000263640.3:c.731C>T	p.Ser244Leu	p.S244L	ENST00000263640	NM_001105.4	244	tCa/tTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242480	+	frameshift_variant	Frame_Shift_Del	DEL	TTAAGAGAAGCA	TTAAGAGAAGCA	C			P-0026255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	101	390	0	ENST00000275493.2:c.2239_2250delinsC	p.Leu747HisfsTer12	p.L747Hfs*12	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCA/C																																																																														
MED12	9968	MSKCC	GRCh37	X	70356353	70356353	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	116	398	0	ENST00000374080.3:c.5248G>T	p.Glu1750Ter	p.E1750*	ENST00000374080		1750	Gag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242486	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAACATCT	ATTAAGAGAAGCAACATCT	T			P-0040465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	32	478	0	ENST00000275493.2:c.2238_2255del	p.Glu746_Ser752delinsAsp	p.E746_S752delinsD	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACATCT/gaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	208	199	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	292	173	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	50	100	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	265	418	2	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221161	5221161	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs575201235		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	284	281	0	ENST00000357368.4:c.3305G>A	p.Arg1102His	p.R1102H	ENST00000357368	NM_002850.3	1102	cGc/cAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662691	117662691	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs368206665		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	130	197	0	ENST00000368508.3:c.4774C>T	p.Arg1592Cys	p.R1592C	ENST00000368508	NM_002944.2	1592	Cgt/Tgt																																																																														
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	218	244	0	ENST00000575354.2:c.4586del	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	337	390	0	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	169	190	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699208	117699208	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	44	270	0	ENST00000369458.3:c.433T>C	p.Tyr145His	p.Y145H	ENST00000369458	NM_024626.3	145	Tat/Cat																																																																														
RAF1	5894	MSKCC	GRCh37	3	12629134	12629134	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	48	198	0	ENST00000251849.4:c.1373A>T	p.Tyr458Phe	p.Y458F	ENST00000251849	NM_002880.3	458	tAt/tTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162957	47162957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	131	218	0	ENST00000409792.3:c.3169G>A	p.Asp1057Asn	p.D1057N	ENST00000409792	NM_014159.6	1057	Gat/Aat																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200152	128200152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	95	147	0	ENST00000341105.2:c.1153C>T	p.Pro385Ser	p.P385S	ENST00000341105	NM_032638.4	385	Cca/Tca																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522504	67522504	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	50	87	0	ENST00000274335.5:c.1A>G	p.Met1?	p.M1?	ENST00000274335		1	Atg/Gtg																																																																														
APC	324	MSKCC	GRCh37	5	112137022	112137022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs767457050		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	52	186	0	ENST00000257430.4:c.776G>A	p.Arg259Gln	p.R259Q	ENST00000257430	NM_000038.5	259	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112177085	112177085	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	61	306	0	ENST00000257430.4:c.5794A>G	p.Thr1932Ala	p.T1932A	ENST00000257430	NM_000038.5	1932	Act/Gct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100003	157100003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	29	117	0	ENST00000346085.5:c.940G>C	p.Gly314Arg	p.G314R	ENST00000346085	NM_020732.3	314	Ggc/Cgc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157488299	157488299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	128	93	0	ENST00000346085.5:c.3005C>T	p.Ala1002Val	p.A1002V	ENST00000346085	NM_020732.3	1002	gCc/gTc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737070	145737070	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779410033		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	211	339	1	ENST00000428558.2:c.3496G>A	p.Gly1166Ser	p.G1166S	ENST00000428558	NM_004260.3	1166	Ggc/Agc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145743006	145743006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	178	150	0	ENST00000428558.2:c.98C>T	p.Ala33Val	p.A33V	ENST00000428558	NM_004260.3	33	gCg/gTg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020733	37020733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	291	251	0	ENST00000358127.4:c.112C>T	p.Arg38Cys	p.R38C	ENST00000358127	NM_001280556.1	38	Cgc/Tgc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900252	101900252	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	91	182	0	ENST00000374994.4:c.686T>A	p.Val229Asp	p.V229D	ENST00000374994	NM_004612.2	229	gTt/gAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375222	118375222	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	146	186	0	ENST00000534358.1:c.8615C>G	p.Ser2872Ter	p.S2872*	ENST00000534358	NM_005933.3	2872	tCa/tGa																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944743	31944743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	31	41	0	ENST00000340398.3:c.358A>G	p.Met120Val	p.M120V	ENST00000340398	NM_001013699.2	120	Atg/Gtg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49439877	49439877	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1210295814		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1226	112	362	0	ENST00000301067.7:c.4664C>T	p.Ser1555Phe	p.S1555F	ENST00000301067	NM_003482.3	1555	tCc/tTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877407	28877407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759739030		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	52	142	0	ENST00000282397.4:c.3914G>A	p.Arg1305His	p.R1305H	ENST00000282397	NM_002019.4	1305	cGc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912064	32912064	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	193	443	0	ENST00000380152.3:c.3572A>T	p.Lys1191Met	p.K1191M	ENST00000380152		1191	aAg/aTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930633	32930633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55716624		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	140	172	0	ENST00000380152.3:c.7504C>T	p.Arg2502Cys	p.R2502C	ENST00000380152		2502	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778116	3778116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761751428		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	318	338	0	ENST00000262367.5:c.6932C>T	p.Pro2311Leu	p.P2311L	ENST00000262367	NM_004380.2	2311	cCg/cTg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041518	14041518	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149364215		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	176	150	0	ENST00000311895.7:c.2065C>T	p.Arg689Cys	p.R689C	ENST00000311895	NM_005236.2	689	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828582	72828582	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1496	262	492	0	ENST00000268489.5:c.7999A>G	p.Thr2667Ala	p.T2667A	ENST00000268489	NM_006885.3	2667	Act/Gct																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944283	81944283	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1695	99	414	0	ENST00000359376.3:c.1892T>G	p.Leu631Arg	p.L631R	ENST00000359376	NM_002661.3	631	cTc/cGc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688712	47688712	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	267	274	0	ENST00000347630.2:c.588T>G	p.Asn196Lys	p.N196K	ENST00000347630	NM_001007230.1	196	aaT/aaG																																																																														
STK11	6794	MSKCC	GRCh37	19	1221331	1221331	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	171	380	0	ENST00000326873.7:c.854T>G	p.Leu285Arg	p.L285R	ENST00000326873	NM_000455.4	285	cTg/cGg																																																																														
INSR	3643	MSKCC	GRCh37	19	7184465	7184465	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1329693158		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	330	272	0	ENST00000302850.5:c.836G>A	p.Arg279His	p.R279H	ENST00000302850	NM_000208.2	279	cGc/cAc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19258583	19258583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1434	104	499	0	ENST00000162023.5:c.317C>A	p.Pro106His	p.P106H	ENST00000162023		106	cCt/cAt																																																																														
TOP1	7150	MSKCC	GRCh37	20	39741483	39741483	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	122	175	0	ENST00000361337.2:c.1370T>C	p.Ile457Thr	p.I457T	ENST00000361337	NM_003286.2	457	aTc/aCc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076915	41076915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	245	197	0	ENST00000373198.4:c.1505T>C	p.Ile502Thr	p.I502T	ENST00000373198	NM_133170.3	502	aTc/aCc																																																																														
NF2	4771	MSKCC	GRCh37	22	30070890	30070890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	116	296	0	ENST00000338641.4:c.1406A>G	p.Lys469Arg	p.K469R	ENST00000338641	NM_000268.3	469	aAg/aGg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933022	39933022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778509267		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	608	382	0	ENST00000378444.4:c.1577C>T	p.Ser526Leu	p.S526L	ENST00000378444	NM_001123385.1	526	tCg/tTg																																																																														
AR	367	MSKCC	GRCh37	X	66765403	66765403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1264061748		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1294	82	315	2	ENST00000374690.3:c.415G>A	p.Val139Met	p.V139M	ENST00000374690	NM_000044.3	139	Gtg/Atg																																																																														
AR	367	MSKCC	GRCh37	X	66765826	66765826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1646	111	426	3	ENST00000374690.3:c.838C>T	p.Arg280Cys	p.R280C	ENST00000374690	NM_000044.3	280	Cgt/Tgt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954643	17954643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	295	321	0	ENST00000458235.1:c.251del	p.Pro84ArgfsTer63	p.P84Rfs*63	ENST00000458235	NM_000215.3	84	cCg/cg																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003784	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	391	237	0	ENST00000558401.1:c.41_44del	p.Ser14PhefsTer29	p.S14Ffs*29	ENST00000558401	NM_004048.2	13	CTCTct/ct																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881668	111881669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	199	265	0	ENST00000393256.3:c.350dup	p.Ser118LysfsTer21	p.S118Kfs*21	ENST00000393256	NM_006538.4	116	acc/aCcc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37081785	37081786	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GG	GG	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	184	147	0	ENST00000231790.2:c.1667_1667+1del		p.X556_splice	ENST00000231790	NM_000249.3	556																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56178258	56178258	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	302	239	0	ENST00000399503.3:c.3236del	p.Asn1079IlefsTer3	p.N1079Ifs*3	ENST00000399503	NM_005921.1	1077	tcA/tc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805045	89805046	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1030509993		P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	309	302	0	ENST00000389301.3:c.4331_4332del	p.Pro1444ArgfsTer3	p.P1444Rfs*3	ENST00000389301	NM_000135.2	1444	cCT/c																																																																														
ALK	238	MSKCC	GRCh37	2	29443612	29443612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	178	251	0	ENST00000389048.3:c.3605del	p.Gly1202GlufsTer56	p.G1202Efs*56	ENST00000389048	NM_004304.4	1202	gGa/ga																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222233	2222235	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	363	635	0	ENST00000326181.6:c.521_523del	p.Asn174del	p.N174del	ENST00000326181	NM_032271.2	173	AAC/-																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742041	145742041	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	312	284	0	ENST00000428558.2:c.462del	p.Val155SerfsTer25	p.V155Sfs*25	ENST00000428558	NM_004260.3	154	aaA/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	348	612	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68772311	68772311	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	152	310	300	ENST00000261769.5:c.160A>T	p.Arg54Ter	p.R54*	ENST00000261769	NM_004360.3	54	Aga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68772311	68772311	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	246	610	0	ENST00000261769.5:c.160A>T	p.Arg54Ter	p.R54*	ENST00000261769	NM_004360.3	54	Aga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023461	27023462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	187	516	0	ENST00000324856.7:c.572dup	p.Leu192ProfsTer208	p.L192Pfs*208	ENST00000324856	NM_006015.4	189	-/G																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653851	89653851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	203	378	0	ENST00000371953.3:c.149T>C	p.Ile50Thr	p.I50T	ENST00000371953	NM_000314.4	50	aTt/aCt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965417	15965417	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	126	239	0	ENST00000268712.3:c.5387+2T>G		p.X1796_splice	ENST00000268712	NM_006311.3	1796																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265086	198265086	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	224	402	0	ENST00000335508.6:c.2791C>G	p.Gln931Glu	p.Q931E	ENST00000335508	NM_012433.2	931	Cag/Gag																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231787	36231787	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	245	628	0	ENST00000300305.3:c.597del	p.Arg201GlufsTer10	p.R201Efs*10	ENST00000300305		199	ggG/gg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923781	39923781	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	306	746	0	ENST00000378444.4:c.3310A>T	p.Lys1104Ter	p.K1104*	ENST00000378444	NM_001123385.1	1104	Aag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1464727668		P-0040386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	272	751	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636997	176636997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	164	717	2	ENST00000439151.2:c.1597C>A	p.Leu533Ile	p.L533I	ENST00000439151	NM_022455.4	533	Ctt/Att																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843683	156843683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	59	938	0	ENST00000524377.1:c.1109C>T	p.Ala370Val	p.A370V	ENST00000524377	NM_002529.3	370	gCc/gTc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67198910	67198910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	79	615	0	ENST00000312629.5:c.381G>T	p.Lys127Asn	p.K127N	ENST00000312629	NM_003952.2	127	aaG/aaT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226417	41226417	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	432	782	0	ENST00000357654.3:c.4606del	p.Glu1536SerfsTer12	p.E1536Sfs*12	ENST00000357654	NM_007294.3	1536	Gag/ag																																																																														
REL	5966	MSKCC	GRCh37	2	61149211	61149211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	98	436	1	ENST00000295025.8:c.1401T>A	p.Asp467Glu	p.D467E	ENST00000295025	NM_002908.2	467	gaT/gaA																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721807	176721807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	24	642	1	ENST00000439151.2:c.7438G>T	p.Asp2480Tyr	p.D2480Y	ENST00000439151	NM_022455.4	2480	Gat/Tat																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730075	41730075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	49	587	0	ENST00000242208.4:c.454C>A	p.Arg152Ser	p.R152S	ENST00000242208	NM_002192.2	152	Cgt/Agt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	53	315	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131514	202131514	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	51	267	0	ENST00000358485.4:c.482G>A	p.Arg161Lys	p.R161K	ENST00000358485	NM_001080125.1	161	aGg/aAg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519841		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	44	270	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			633	194	581	1	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16235967	16235967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			665	113	467	0	ENST00000375759.3:c.1033C>T	p.Arg345Cys	p.R345C	ENST00000375759	NM_015001.2	345	Cgc/Tgc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458964	120458964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	90	733	0	ENST00000256646.2:c.6381G>T	p.Lys2127Asn	p.K2127N	ENST00000256646	NM_024408.3	2127	aaG/aaT																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976508	25976508	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	54	397	0	ENST00000435504.4:c.1037G>A	p.Gly346Asp	p.G346D	ENST00000435504		346	gGt/gAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026438	48026438	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs786202363		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	78	526	0	ENST00000234420.5:c.1316A>G	p.Asp439Gly	p.D439G	ENST00000234420	NM_000179.2	439	gAt/gGt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027886	48027886	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779246		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	43	302	0	ENST00000234420.5:c.2764C>T	p.Arg922Ter	p.R922*	ENST00000234420	NM_000179.2	922	Cga/Tga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437692	52437692	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201302700		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			565	76	669	0	ENST00000460680.1:c.1469A>G	p.Asn490Ser	p.N490S	ENST00000460680	NM_004656.3	490	aAt/aGt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs797045586		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	30	259	1	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332829	153332829	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			755	96	593	1	ENST00000281708.4:c.127C>T	p.Gln43Ter	p.Q43*	ENST00000281708	NM_033632.3	43	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524993	187524993	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371987657		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			575	78	631	0	ENST00000441802.2:c.10687G>A	p.Val3563Ile	p.V3563I	ENST00000441802	NM_005245.3	3563	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112174868	112174868	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	36	286	0	ENST00000257430.4:c.3577C>T	p.Gln1193Ter	p.Q1193*	ENST00000257430	NM_000038.5	1193	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175141	112175141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	35	228	0	ENST00000257430.4:c.3850G>T	p.Glu1284Ter	p.E1284*	ENST00000257430	NM_000038.5	1284	Gaa/Taa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32165173	32165173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs752105876		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	81	662	0	ENST00000375023.3:c.4955G>A	p.Arg1652His	p.R1652H	ENST00000375023	NM_004557.3	1652	cGc/cAc																																																																														
RET	5979	MSKCC	GRCh37	10	43604533	43604533	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs546866208		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	64	622	1	ENST00000355710.3:c.1118C>T	p.Ala373Val	p.A373V	ENST00000355710	NM_020975.4	373	gCg/gTg																																																																														
ATM	472	MSKCC	GRCh37	11	108170565	108170565	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	57	392	0	ENST00000278616.4:c.5130G>A	p.Trp1710Ter	p.W1710*	ENST00000278616	NM_000051.3	1710	tgG/tgA																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432289	432289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs376128815		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			867	112	539	0	ENST00000399788.2:c.2234G>A	p.Arg745His	p.R745H	ENST00000399788	NM_001042603.1	745	cGt/cAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231437	46231437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			561	78	437	0	ENST00000334344.6:c.1277C>T	p.Thr426Met	p.T426M	ENST00000334344	NM_152641.2	426	aCg/aTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46240657	46240657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs757456378		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			625	79	384	0	ENST00000334344.6:c.1517C>T	p.Ala506Val	p.A506V	ENST00000334344	NM_152641.2	506	gCg/gTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133225959	133225959	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs949243552		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	69	820	2	ENST00000320574.5:c.3938C>T	p.Thr1313Met	p.T1313M	ENST00000320574	NM_006231.2	1313	aCg/aTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28880860	28880860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746322044		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	203	609	2	ENST00000282397.4:c.3770G>A	p.Arg1257His	p.R1257H	ENST00000282397	NM_002019.4	1257	cGc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913027	32913027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80358685		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	214	424	0	ENST00000380152.3:c.4535G>A	p.Arg1512His	p.R1512H	ENST00000380152		1512	cGt/cAt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435420	110435420	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1049519615		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	274	503	0	ENST00000375856.3:c.2981C>T	p.Pro994Leu	p.P994L	ENST00000375856	NM_003749.2	994	cCg/cTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934842	9934842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	106	582	0	ENST00000330684.3:c.1448G>A	p.Gly483Glu	p.G483E	ENST00000330684	NM_001134407.1	483	gGg/gAg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646867	23646867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			679	127	800	0	ENST00000261584.4:c.1000T>C	p.Tyr334His	p.Y334H	ENST00000261584	NM_024675.3	334	Tac/Cac																																																																														
CDH1	999	MSKCC	GRCh37	16	68849514	68849514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36087757		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	83	568	0	ENST00000261769.5:c.1417G>A	p.Val473Ile	p.V473I	ENST00000261769	NM_004360.3	473	Gtc/Atc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098455	11098455	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1361910224		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	44	330	0	ENST00000344626.4:c.973G>A	p.Val325Met	p.V325M	ENST00000344626	NM_003072.3	325	Gtg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132438	11132438	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064794284		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	81	703	1	ENST00000344626.4:c.2654G>A	p.Arg885His	p.R885H	ENST00000344626	NM_003072.3	885	cGc/cAc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478633	57478633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1131691999		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	65	520	0	ENST00000371085.3:c.305C>T	p.Ala102Val	p.A102V	ENST00000371085	NM_000516.4	102	gCg/gTg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24135758	24135758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	63	395	3	ENST00000263121.7:c.245C>T	p.Thr82Met	p.T82M	ENST00000263121	NM_003073.3	82	aCg/aTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402216	402217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	121	889	0	ENST00000399788.2:c.4574dup	p.Glu1526GlyfsTer9	p.E1526Gfs*9	ENST00000399788	NM_001042603.1	1525	aag/aaAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	37	240	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2229791	2229791	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	93	623	0	ENST00000398665.3:c.4614G>T	p.Ter1538TyrextTer63	p.*1538Yext*63	ENST00000398665	NM_032482.2	1538	taG/taT																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	115	889	6	ENST00000281043.3:c.134del	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1271466699		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	58	639	5	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845934	72845934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759043061		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	59	379	0	ENST00000268489.5:c.3533C>T	p.Ser1178Leu	p.S1178L	ENST00000268489	NM_006885.3	1178	tCg/tTg																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158525	26158525	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1222808686		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	48	548	0	ENST00000289316.2:c.128A>G	p.Tyr43Cys	p.Y43C	ENST00000289316	NM_138720.2	43	tAc/tGc																																																																														
HGF	3082	MSKCC	GRCh37	7	81350151	81350151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	41	388	0	ENST00000222390.5:c.1181G>T	p.Gly394Val	p.G394V	ENST00000222390	NM_000601.4	394	gGg/gTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884286	37884286	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36085723		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	51	455	0	ENST00000269571.5:c.3757G>A	p.Val1253Met	p.V1253M	ENST00000269571		1253	Gtg/Atg																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797162	45797162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	74	736	0	ENST00000372115.3:c.1211A>G	p.Lys404Arg	p.K404R	ENST00000372115	NM_001048171.1	404	aAg/aGg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377264	118377264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	50	324	0	ENST00000534358.1:c.10657G>T	p.Gly3553Trp	p.G3553W	ENST00000534358	NM_005933.3	3553	Ggg/Tgg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111884648	111884648	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1266852479		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	37	493	0	ENST00000341259.2:c.824T>C	p.Phe275Ser	p.F275S	ENST00000341259	NM_005475.2	275	tTt/tCt																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40459672	40459672	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1286424849		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	52	680	0	ENST00000345506.4:c.1837G>A	p.Gly613Arg	p.G613R	ENST00000345506	NM_003152.3	613	Ggg/Agg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78865554	78865554	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	75	605	0	ENST00000306801.3:c.2018A>G	p.Gln673Arg	p.Q673R	ENST00000306801	NM_020761.2	673	cAg/cGg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18966020	18966020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			336	29	419	0	ENST00000262803.5:c.1513A>G	p.Ile505Val	p.I505V	ENST00000262803	NM_002911.3	505	Atc/Gtc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256695	46256695	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773805737		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			671	115	508	0	ENST00000371998.3:c.751C>T	p.Arg251Cys	p.R251C	ENST00000371998		251	Cgc/Tgc																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495717	72495717	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			656	120	461	0	ENST00000477973.2:c.353T>G	p.Cys119Gly	p.C119G	ENST00000477973	NM_012234.5	119	Tgc/Ggc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821005	32821005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1231820574		P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	157	921	0	ENST00000354258.4:c.589C>A	p.Pro197Thr	p.P197T	ENST00000354258	NM_000593.5	197	Cct/Act																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553635	106553635	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	19	230	0	ENST00000369096.4:c.1600A>G	p.Thr534Ala	p.T534A	ENST00000369096	NM_001198.3	534	Acc/Gcc																																																																														
CDK6	1021	MSKCC	GRCh37	7	92300789	92300789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001237-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	45	308	0	ENST00000265734.4:c.598G>A	p.Val200Met	p.V200M	ENST00000265734	NM_001259.6	200	Gtg/Atg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	67	512	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894365		P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	10	466	1	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119932	70119932	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	133	386	0	ENST00000245479.2:c.934C>T	p.Gln312Ter	p.Q312*	ENST00000245479	NM_000346.3	312	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112445441		P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	115	463	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928872	44928872	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs755440519		P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	12	226	0	ENST00000377967.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000377967	NM_021140.2	658	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	220	376	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120175	70120175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	62	379	0	ENST00000245479.2:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000245479	NM_000346.3	393	Cag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	29474041	29474041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs78723472		P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	231	758	0	ENST00000389048.3:c.2134G>A	p.Val712Met	p.V712M	ENST00000389048	NM_004304.4	712	Gtg/Atg																																																																														
MED12	9968	MSKCC	GRCh37	X	70339230	70339230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	90	304	0	ENST00000374080.3:c.107T>C	p.Leu36Pro	p.L36P	ENST00000374080		36	cTg/cCg																																																																														
APC	324	MSKCC	GRCh37	5	112173582	112173582	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	69	328	0	ENST00000257430.4:c.2291T>G	p.Leu764Ter	p.L764*	ENST00000257430	NM_000038.5	764	tTa/tGa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81954864	81954864	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1345789580		P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	144	630	0	ENST00000359376.3:c.2297A>G	p.Asn766Ser	p.N766S	ENST00000359376	NM_002661.3	766	aAt/aGt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89874762	89874762	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	39	534	0	ENST00000389301.3:c.536T>A	p.Leu179His	p.L179H	ENST00000389301	NM_000135.2	179	cTt/cAt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17117070	17117070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	82	687	0	ENST00000285071.4:c.1639G>T	p.Val547Phe	p.V547F	ENST00000285071	NM_144997.5	547	Gtc/Ttc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38962456	38962456	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	19	325	0	ENST00000357387.3:c.1676A>G	p.Asn559Ser	p.N559S	ENST00000357387	NM_152756.3	559	aAt/aGt																																																																														
APC	324	MSKCC	GRCh37	5	112175661	112175662	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACCT			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	91	355	0	ENST00000257430.4:c.4373_4376dup	p.Ala1460TyrfsTer3	p.A1460Yfs*3	ENST00000257430	NM_000038.5	1457	gca/gcACCTa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938432	44938435	+	frameshift_variant	Frame_Shift_Del	DEL	AATG	AATG	-			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	15	293	0	ENST00000377967.4:c.2982_2985del	p.Glu995IlefsTer3	p.E995Ifs*3	ENST00000377967	NM_021140.2	994	AATGaa/aa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040707	47040707	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	83	379	0	ENST00000329236.7:c.1108C>T	p.Gln370Ter	p.Q370*	ENST00000329236	NM_001204466.1	370	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	58	324	0				ENST00000310581	NM_198253.2																																																																																
TSC1	7248	MSKCC	GRCh37	9	135781386	135781386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs118203549		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	684	982	3	ENST00000298552.3:c.1579C>T	p.Gln527Ter	p.Q527*	ENST00000298552	NM_001162426.1	527	Cag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	360	483	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005276	150005276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	186	550	0	ENST00000253339.5:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000253339		317	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1019340046		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	358	625	2	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245759	41245759	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55650082		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	158	505	1	ENST00000357654.3:c.1789G>A	p.Glu597Lys	p.E597K	ENST00000357654	NM_007294.3	597	Gaa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11290981	11290981	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	89	524	0	ENST00000361445.4:c.2779+1G>T		p.X927_splice	ENST00000361445	NM_004958.3	927																																																																															
SPEN	23013	MSKCC	GRCh37	1	16245959	16245959	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	107	699	0	ENST00000375759.3:c.1582G>C	p.Val528Leu	p.V528L	ENST00000375759	NM_015001.2	528	Gtg/Ctg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65335035	65335035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	91	529	0	ENST00000342505.4:c.606G>A	p.Met202Ile	p.M202I	ENST00000342505	NM_002227.2	202	atG/atA																																																																														
MSH2	4436	MSKCC	GRCh37	2	47709975	47709975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	221	577	0	ENST00000233146.2:c.2692G>A	p.Glu898Lys	p.E898K	ENST00000233146	NM_000251.2	898	Gaa/Aaa																																																																														
REL	5966	MSKCC	GRCh37	2	61149011	61149011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	274	555	0	ENST00000295025.8:c.1201C>T	p.His401Tyr	p.H401Y	ENST00000295025	NM_002908.2	401	Cat/Tat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198264830	198264830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	538	600	0	ENST00000335508.6:c.2962G>A	p.Glu988Lys	p.E988K	ENST00000335508	NM_012433.2	988	Gaa/Aaa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266484	198266484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	66	459	0	ENST00000335508.6:c.2352G>C	p.Met784Ile	p.M784I	ENST00000335508	NM_012433.2	784	atG/atC																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732930	30732930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	540	426	0	ENST00000359013.4:c.1618G>C	p.Glu540Gln	p.E540Q	ENST00000359013	NM_001024847.2	540	Gag/Cag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643341	52643341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	302	437	0	ENST00000394830.3:c.2555G>T	p.Arg852Ile	p.R852I	ENST00000394830	NM_018313.4	852	aGa/aTa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643822	52643822	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1227600181		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	263	462	0	ENST00000394830.3:c.2074G>C	p.Glu692Gln	p.E692Q	ENST00000394830	NM_018313.4	692	Gag/Cag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643864	52643864	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1422119249		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	219	367	0	ENST00000394830.3:c.2032C>T	p.Arg678Cys	p.R678C	ENST00000394830	NM_018313.4	678	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917612	178917612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	134	450	0	ENST00000263967.3:c.487G>A	p.Ala163Thr	p.A163T	ENST00000263967	NM_006218.2	163	Gca/Aca																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808975	1808975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1458621673		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	47	387	1	ENST00000260795.2:c.2407G>A	p.Gly803Ser	p.G803S	ENST00000260795		803	Ggc/Agc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007340	143007340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	65	348	0	ENST00000262992.4:c.2444C>G	p.Ser815Cys	p.S815C	ENST00000262992	NM_001101669.1	815	tCc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112175517	112175517	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	58	464	0	ENST00000257430.4:c.4226C>G	p.Pro1409Arg	p.P1409R	ENST00000257430	NM_000038.5	1409	cCa/cGa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515151	149515151	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs558122968		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	52	534	1	ENST00000261799.4:c.331G>A	p.Asp111Asn	p.D111N	ENST00000261799	NM_002609.3	111	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184781	32184781	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs762081312		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	258	565	0	ENST00000375023.3:c.1802G>C	p.Gly601Ala	p.G601A	ENST00000375023	NM_004557.3	601	gGa/gCa																																																																														
FYN	2534	MSKCC	GRCh37	6	112035558	112035558	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	87	651	0	ENST00000368678.4:c.336G>C	p.Leu112Phe	p.L112F	ENST00000368678		112	ttG/ttC																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522418	157522418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	240	409	0	ENST00000346085.5:c.4690G>C	p.Glu1564Gln	p.E1564Q	ENST00000346085	NM_020732.3	1564	Gag/Cag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55224296	55224296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	102	506	0	ENST00000275493.2:c.1077C>G	p.Phe359Leu	p.F359L	ENST00000275493	NM_005228.3	359	ttC/ttG																																																																														
MET	4233	MSKCC	GRCh37	7	116411999	116411999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	111	489	0	ENST00000397752.3:c.2984T>C	p.Met995Thr	p.M995T	ENST00000397752	NM_000245.2	995	aTg/aCg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201854	67201854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	181	432	0	ENST00000312629.5:c.1054G>C	p.Glu352Gln	p.E352Q	ENST00000312629	NM_003952.2	352	Gag/Cag																																																																														
EED	8726	MSKCC	GRCh37	11	85988153	85988153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	250	619	1	ENST00000263360.6:c.1098G>T	p.Met366Ile	p.M366I	ENST00000263360	NM_003797.3	366	atG/atT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343883	118343883	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	73	420	0	ENST00000534358.1:c.2009C>G	p.Ser670Cys	p.S670C	ENST00000534358	NM_005933.3	670	tCt/tGt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125513776	125513776	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	356	621	0	ENST00000428830.2:c.904C>G	p.Pro302Ala	p.P302A	ENST00000428830	NM_001114121.2	302	Cca/Gca																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025527	1025527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	157	630	0	ENST00000358495.3:c.848C>T	p.Ser283Leu	p.S283L	ENST00000358495	NM_134424.2	283	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433059	49433059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	286	639	1	ENST00000301067.7:c.8312G>A	p.Arg2771Gln	p.R2771Q	ENST00000301067	NM_003482.3	2771	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445068	49445068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	120	242	1	ENST00000301067.7:c.2398C>T	p.Gln800Ter	p.Q800*	ENST00000301067	NM_003482.3	800	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445649	49445649	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	342	849	0	ENST00000301067.7:c.1817C>G	p.Ser606Cys	p.S606C	ENST00000301067	NM_003482.3	606	tCt/tGt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861912	57861912	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs925036184		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	271	985	4	ENST00000228682.2:c.1213C>T	p.Arg405Trp	p.R405W	ENST00000228682	NM_005269.2	405	Cgg/Tgg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109807	115109807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	521	518	0	ENST00000257566.3:c.2071G>C	p.Glu691Gln	p.E691Q	ENST00000257566	NM_016569.3	691	Gaa/Caa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895678	28895678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	178	625	0	ENST00000282397.4:c.3096G>C	p.Glu1032Asp	p.E1032D	ENST00000282397	NM_002019.4	1032	gaG/gaC																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914967	32914967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs398122558		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	695	925	0	ENST00000380152.3:c.6475C>T	p.Gln2159Ter	p.Q2159*	ENST00000380152		2159	Caa/Taa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528021	103528021	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	66	336	0	ENST00000355739.4:c.3329T>C	p.Leu1110Ser	p.L1110S	ENST00000355739	NM_000123.3	1110	tTa/tCa																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872446	35872446	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1167027301		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	148	832	3	ENST00000216797.5:c.457G>A	p.Glu153Lys	p.E153K	ENST00000216797	NM_020529.2	153	Gag/Aag																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609879	81609879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	59	371	0	ENST00000298171.2:c.1477G>C	p.Gly493Arg	p.G493R	ENST00000298171	NM_000369.2	493	Ggg/Cgg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610503	81610503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137908024		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	94	632	0	ENST00000298171.2:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000298171	NM_000369.2	701	Cgc/Tgc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95584000	95584000	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs777894117		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	79	338	0	ENST00000343455.3:c.1468C>T	p.Arg490Cys	p.R490C	ENST00000343455	NM_177438.2	490	Cgc/Tgc																																																																														
RAD51	5888	MSKCC	GRCh37	15	41001226	41001226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	261	699	1	ENST00000267868.3:c.347G>A	p.Gly116Glu	p.G116E	ENST00000267868	NM_002875.4	116	gGa/gAa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14028072	14028072	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	81	453	0	ENST00000311895.7:c.1126G>C	p.Glu376Gln	p.E376Q	ENST00000311895	NM_005236.2	376	Gaa/Caa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56866264	56866264	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1374778377		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	185	879	0	ENST00000308159.5:c.1309C>G	p.Leu437Val	p.L437V	ENST00000308159	NM_014669.4	437	Ctc/Gtc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993491	72993491	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144613545		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	602	872	5	ENST00000268489.5:c.554C>T	p.Ser185Leu	p.S185L	ENST00000268489	NM_006885.3	185	tCg/tTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89880961	89880961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	260	642	0	ENST00000389301.3:c.250G>A	p.Glu84Lys	p.E84K	ENST00000389301	NM_000135.2	84	Gag/Aag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89880970	89880970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	258	668	3	ENST00000389301.3:c.241G>A	p.Asp81Asn	p.D81N	ENST00000389301	NM_000135.2	81	Gac/Aac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882319	89882319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	240	702	0	ENST00000389301.3:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000389301	NM_000135.2	52	cGa/cAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961011	15961011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142717545		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	240	528	2	ENST00000268712.3:c.6209C>T	p.Ser2070Leu	p.S2070L	ENST00000268712	NM_006311.3	2070	tCg/tTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004580	16004580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	222	359	1	ENST00000268712.3:c.2674G>A	p.Glu892Lys	p.E892K	ENST00000268712	NM_006311.3	892	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004874	16004874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	246	549	0	ENST00000268712.3:c.2380G>C	p.Glu794Gln	p.E794Q	ENST00000268712	NM_006311.3	794	Gag/Cag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618619	37618619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	347	493	5	ENST00000447079.4:c.295C>T	p.Arg99Cys	p.R99C	ENST00000447079	NM_015083.1	99	Cgt/Tgt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226534	41226534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	153	448	0	ENST00000357654.3:c.4489T>C	p.Ser1497Pro	p.S1497P	ENST00000357654	NM_007294.3	1497	Tcc/Ccc																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774181	56774181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	308	665	0	ENST00000337432.4:c.532C>G	p.Gln178Glu	p.Q178E	ENST00000337432	NM_058216.2	178	Cag/Gag																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78899277	78899277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	80	323	0	ENST00000306801.3:c.2916G>C	p.Met972Ile	p.M972I	ENST00000306801	NM_020761.2	972	atG/atC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	169	542	0	ENST00000342988.3:c.733C>A	p.Gln245Lys	p.Q245K	ENST00000342988	NM_005359.5	245	Cag/Aag																																																																														
CIC	23152	MSKCC	GRCh37	19	42798148	42798148	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	249	634	0	ENST00000575354.2:c.4102G>C	p.Glu1368Gln	p.E1368Q	ENST00000575354	NM_015125.3	1368	Gag/Cag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45864863	45864863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1426	323	881	0	ENST00000391945.4:c.1156C>G	p.Leu386Val	p.L386V	ENST00000391945	NM_000400.3	386	Ctg/Gtg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912392	50912392	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	695	782	0	ENST00000440232.2:c.1906C>T	p.Gln636Ter	p.Q636*	ENST00000440232	NM_002691.3	636	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747096	40747096	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	79	488	0	ENST00000373198.4:c.2986C>T	p.Gln996Ter	p.Q996*	ENST00000373198	NM_133170.3	996	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980872	40980872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	99	471	0	ENST00000373198.4:c.1614G>C	p.Gln538His	p.Q538H	ENST00000373198	NM_133170.3	538	caG/caC																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164697	36164697	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	259	645	0	ENST00000300305.3:c.1178G>C	p.Gly393Ala	p.G393A	ENST00000300305		393	gGa/gCa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252928	36252928	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	157	407	0	ENST00000300305.3:c.434G>C	p.Arg145Thr	p.R145T	ENST00000300305		145	aGa/aCa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259331	36259331	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	64	257	0	ENST00000300305.3:c.160G>C	p.Glu54Gln	p.E54Q	ENST00000300305		54	Gag/Cag																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288422	21288422	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1421511528		P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	186	561	0	ENST00000354336.3:c.667C>T	p.Pro223Ser	p.P223S	ENST00000354336	NM_005207.3	223	Cct/Tct																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184055	123184055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	224	357	0	ENST00000218089.9:c.913C>G	p.Arg305Gly	p.R305G	ENST00000218089	NM_001042749.1	305	Cga/Gga																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251885	8251904	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGGAGCCCACCTCGCCCA	GGTGGAGCCCACCTCGCCCA	-			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	33	620	0	ENST00000335790.3:c.173_192del	p.Leu58ProfsTer79	p.L58Pfs*79	ENST00000335790	NM_002315.2	58	cTGGGCGAGGTGGGCTCCACC/c																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344757	118344758	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	111	695	2	ENST00000534358.1:c.2885_2886del	p.Ile962LysfsTer35	p.I962Kfs*35	ENST00000534358	NM_005933.3	961	ctTAta/ctta																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647325	23647341	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTCCTGTTCCTTTAG	TCTTCCTGTTCCTTTAG	-			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	75	478	0	ENST00000261584.4:c.526_542del	p.Leu176AsnfsTer3	p.L176Nfs*3	ENST00000261584	NM_024675.3	176	CTAAAGGAACAGGAAGAa/a																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445293	49445293	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	203	545	0	ENST00000301067.7:c.2173del	p.Leu725CysfsTer205	p.L725Cfs*205	ENST00000301067	NM_003482.3	725	Ctg/tg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180049797	180049878	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGCAGACACGTTGGCATTCTGGATCACCAGCTTGCTCACAGTCTGGGAGAGCACAGGCACAAGGATCCATTTCCTGCCCAA	TGGCAGACACGTTGGCATTCTGGATCACCAGCTTGCTCACAGTCTGGGAGAGCACAGGCACAAGGATCCATTTCCTGCCCAA	G			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	55	710	0	ENST00000261937.6:c.1549-39_1591delinsC		p.X517_splice	ENST00000261937	NM_182925.4	517																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59821927	59821952	+	splice_acceptor_variant,frameshift_variant,intron_variant	Splice_Site	INS	CAACGTTCTTTTAATTTTTCTAATAA	CAACGTTCTTTTAATTTTTCTAATAA	TAAAGAGGGGAAAGAAAAAAATGATAAACCAGTAGAGAG			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	76	477	0	ENST00000259008.2:c.2098_2123delinsCTCTCTACTGGTTTATCATTTTTTTCTTTCCCCTCTTTA		p.X700_splice	ENST00000259008	NM_032043.2	700	TTATTAGAAAAATTAAAAGAACGTTGg/CTCTCTACTGGTTTATCATTTTTTTCTTTCCCCTCTTTAg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759441	133759502	+	protein_altering_variant	In_Frame_Del	DEL	GCGCCTTCTCCCCAAAGACAAAAAGACCAACTTGTTCAGCGCCTTGATCAAGAAGAAGAAGA	GCGCCTTCTCCCCAAAGACAAAAAGACCAACTTGTTCAGCGCCTTGATCAAGAAGAAGAAGA	CAGCCCCAACCCCTCCCAAA			P-0006124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	98	892	0	ENST00000318560.5:c.1764_1824delinsCAGCCCCAACCCCTCCCAA	p.Glu588_Lys608delinsAspSerProAsnProSerGln	p.E588_K608delinsDSPNPSQ	ENST00000318560	NM_005157.4	588	gaGCGCCTTCTCCCCAAAGACAAAAAGACCAACTTGTTCAGCGCCTTGATCAAGAAGAAGAAGAag/gaCAGCCCCAACCCCTCCCAAAag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	133	577	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719535	190719535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	46	364	0	ENST00000441310.2:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000441310	NM_000534.4	513	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	27	801	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679783	88679783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	41	754	2	ENST00000360948.2:c.680C>T	p.Ala227Val	p.A227V	ENST00000360948	NM_001012338.2	227	gCt/gTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246707	41246707	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	38	621	0	ENST00000357654.3:c.841del	p.Ser281AlafsTer17	p.S281Afs*17	ENST00000357654	NM_007294.3	281	Agc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	70	550	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808332	1808332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	9	769	0	ENST00000260795.2:c.2090G>A	p.Gly697Asp	p.G697D	ENST00000260795		697	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	167	519	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495752	72495752	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	72	355	0	ENST00000477973.2:c.318del	p.Pro107LeufsTer29	p.P107Lfs*29	ENST00000477973	NM_012234.5	107	cCt/ct																																																																														
HGF	3082	MSKCC	GRCh37	7	81339524	81339524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	99	488	0	ENST00000222390.5:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000222390	NM_000601.4	494	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	98	763	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	723	815	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946089	13946089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	28	784	0	ENST00000405192.2:c.1007G>C	p.Arg336Pro	p.R336P	ENST00000405192	NM_001163147.1	336	cGa/cCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873765	151873765	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	125	588	0	ENST00000262189.6:c.8773G>T	p.Glu2925Ter	p.E2925*	ENST00000262189	NM_170606.2	2925	Gag/Tag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187251	38187251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	156	1121	0	ENST00000317025.8:c.1226G>A	p.Ser409Asn	p.S409N	ENST00000317025	NM_023034.1	409	aGt/aAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0018312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	155	683	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37649095	37649096	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0018312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	108	559	0	ENST00000447079.4:c.2200_2201delinsTT	p.Gly734Leu	p.G734L	ENST00000447079	NM_015083.1	734	GGa/TTa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244725	41244725	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	72	691	0	ENST00000357654.3:c.2823T>A	p.Asn941Lys	p.N941K	ENST00000357654	NM_007294.3	941	aaT/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0018996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	492	878	0	ENST00000269305.4:c.378C>G	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taG																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741913	17741913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	44	313	0	ENST00000250003.3:c.584G>A	p.Gly195Asp	p.G195D	ENST00000250003	NM_002478.4	195	gGc/gAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42797108	42797108	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0018996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	135	862	0	ENST00000575354.2:c.3470C>G	p.Ala1157Gly	p.A1157G	ENST00000575354	NM_015125.3	1157	gCa/gGa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36265224	36265224	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0018996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	125	623	0	ENST00000300305.3:c.95A>G	p.His32Arg	p.H32R	ENST00000300305		32	cAc/cGc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920010	1920010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	120	774	0	ENST00000382891.5:c.1070C>T	p.Pro357Leu	p.P357L	ENST00000382891	NM_133335.3	357	cCt/cTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914100	32914114	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAGTAAAGTAATT	TTCAGTAAAGTAATT	A			P-0018996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	287	696	1	ENST00000380152.3:c.5608_5622delinsA	p.Phe1870LysfsTer7	p.F1870Kfs*7	ENST00000380152		1870	TTCAGTAAAGTAATT/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	592	819	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011182	12011182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	44	485	0	ENST00000353533.5:c.589G>C	p.Asp197His	p.D197H	ENST00000353533	NM_003010.3	197	Gat/Cat																																																																														
PAK7	0	MSKCC	GRCh37	20	9546883	9546883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	84	526	0	ENST00000353224.5:c.1139C>A	p.Ala380Asp	p.A380D	ENST00000353224	NM_177990.2	380	gCc/gAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532710	187532710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1010116749		P-0019325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	80	596	0	ENST00000441802.2:c.9683del	p.Pro3228LeufsTer42	p.P3228Lfs*42	ENST00000441802	NM_005245.3	3228	cCt/ct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55228017	55228017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	35	436	0	ENST00000275493.2:c.1484G>C	p.Gly495Ala	p.G495A	ENST00000275493	NM_005228.3	495	gGt/gCt																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345999	152345999	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	65	590	0	ENST00000359321.1:c.571C>G	p.Leu191Val	p.L191V	ENST00000359321	NM_005431.1	191	Ctt/Gtt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914655	39914655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	89	725	1	ENST00000378444.4:c.4707G>A	p.Met1569Ile	p.M1569I	ENST00000378444	NM_001123385.1	1569	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578421	7578422	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCA			P-0019383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	200	744	0	ENST00000269305.4:c.506_508dup	p.Met169dup	p.M169dup	ENST00000269305	NM_001126112.2	169	acg/aTGAcg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716328	52716328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	153	552	3	ENST00000322088.6:c.772C>T	p.Arg258Cys	p.R258C	ENST00000322088	NM_014225.5	258	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	378	945	1	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	553	1129	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	275	775	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21624564	21624564	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs146077019		P-0019908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	237	590	0	ENST00000421138.2:c.1465A>G	p.Ile489Val	p.I489V	ENST00000421138		489	Ata/Gta																																																																														
NF1	4763	MSKCC	GRCh37	17	29528157	29528157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	47	728	0	ENST00000358273.4:c.1165C>T	p.His389Tyr	p.H389Y	ENST00000358273	NM_001042492.2	389	Cac/Tac																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244508	41244508	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	477	752	0	ENST00000357654.3:c.3040del	p.Met1014TrpfsTer10	p.M1014Wfs*10	ENST00000357654	NM_007294.3	1014	Atg/tg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185183632	185183632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	194	531	1	ENST00000265026.3:c.1486C>T	p.Arg496Trp	p.R496W	ENST00000265026	NM_004721.4	496	Cgg/Tgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70441195	70441195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	68	726	3	ENST00000373644.4:c.4864C>T	p.Arg1622Ter	p.R1622*	ENST00000373644	NM_030625.2	1622	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	152	777	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
AKT1	207	MSKCC	GRCh37	14	105246455	105246455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	68	695	0	ENST00000349310.3:c.145G>A	p.Glu49Lys	p.E49K	ENST00000349310	NM_001014432.1	49	Gag/Aag																																																																														
ATM	472	MSKCC	GRCh37	11	108196162	108196162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	54	702	0	ENST00000278616.4:c.6698T>C	p.Ile2233Thr	p.I2233T	ENST00000278616	NM_000051.3	2233	aTc/aCc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495394	149495394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	65	747	0	ENST00000261799.4:c.3253G>A	p.Glu1085Lys	p.E1085K	ENST00000261799	NM_002609.3	1085	Gag/Aag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39347503	39347503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	58	581	0	ENST00000402219.2:c.61G>C	p.Gly21Arg	p.G21R	ENST00000402219	NM_005633.3	21	Gga/Cga																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375177	31375177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	86	750	0	ENST00000328111.2:c.574G>A	p.Ala192Thr	p.A192T	ENST00000328111	NM_006892.3	192	Gcc/Acc																																																																														
MST1	4485	MSKCC	GRCh37	3	49724585	49724585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	39	497	1	ENST00000449682.2:c.604G>A	p.Glu202Lys	p.E202K	ENST00000449682	NM_020998.3	202	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	294	957	1	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
INHA	3623	MSKCC	GRCh37	2	220439724	220439724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201577506		P-0020118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	104	968	1	ENST00000243786.2:c.577G>A	p.Val193Ile	p.V193I	ENST00000243786	NM_002191.3	193	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0020298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	248	845	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TCF3	6929	MSKCC	GRCh37	19	1611845	1611845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	156	590	0	ENST00000344749.5:c.1817G>A	p.Arg606Gln	p.R606Q	ENST00000344749	NM_001136139.2	606	cGg/cAg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128268675	128268675	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	36	697	0	ENST00000265960.3:c.980A>C	p.Lys327Thr	p.K327T	ENST00000265960	NM_001006617.1	327	aAg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	309	756	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376293	225376293	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	49	296	0	ENST00000264414.4:c.661A>G	p.Ser221Gly	p.S221G	ENST00000264414	NM_003590.4	221	Agc/Ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	157	773	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29007963	29007963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	29	275	0	ENST00000282397.4:c.806C>T	p.Pro269Leu	p.P269L	ENST00000282397	NM_002019.4	269	cCt/cTt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669522	88669522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	78	540	1	ENST00000360948.2:c.1376G>T	p.Arg459Leu	p.R459L	ENST00000360948	NM_001012338.2	459	cGg/cTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786056	3786056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	83	774	1	ENST00000262367.5:c.4709C>A	p.Ala1570Glu	p.A1570E	ENST00000262367	NM_004380.2	1570	gCa/gAa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41199721	41199721	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0021359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	57	615	0	ENST00000357654.3:c.5407-1G>C		p.X1803_splice	ENST00000357654	NM_007294.3	1803																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519383	137519383	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	31	244	0	ENST00000367739.4:c.1255C>G	p.Leu419Val	p.L419V	ENST00000367739	NM_000416.2	419	Ctg/Gtg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68934362	68934362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	50	550	0	ENST00000288368.4:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000288368	NM_024870.2	143	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	194	784	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108200988	108200988	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	94	611	0	ENST00000278616.4:c.7355T>A	p.Leu2452Gln	p.L2452Q	ENST00000278616	NM_000051.3	2452	cTg/cAg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845349	42845349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	122	775	2	ENST00000398585.3:c.913C>T	p.Pro305Ser	p.P305S	ENST00000398585	NM_001135099.1	305	Ccc/Tcc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163903	32163903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	102	580	1	ENST00000375023.3:c.5323G>A	p.Ala1775Thr	p.A1775T	ENST00000375023	NM_004557.3	1775	Gcg/Acg																																																																														
ATRX	546	MSKCC	GRCh37	X	76920242	76920242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	88	701	0	ENST00000373344.5:c.3835G>A	p.Glu1279Lys	p.E1279K	ENST00000373344	NM_000489.3	1279	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717766	89717766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	73	490	0	ENST00000371953.3:c.791T>C	p.Met264Thr	p.M264T	ENST00000371953	NM_000314.4	264	aTg/aCg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23637593	23637593	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	66	800	0	ENST00000261584.4:c.2712G>A	p.Trp904Ter	p.W904*	ENST00000261584	NM_024675.3	904	tgG/tgA																																																																														
GNA11	2767	MSKCC	GRCh37	19	3115040	3115040	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	71	1251	1	ENST00000078429.4:c.575A>T	p.Tyr192Phe	p.Y192F	ENST00000078429	NM_002067.2	192	tAc/tTc																																																																														
TET1	80312	MSKCC	GRCh37	10	70446125	70446125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	22	619	0	ENST00000373644.4:c.5065A>G	p.Thr1689Ala	p.T1689A	ENST00000373644	NM_030625.2	1689	Act/Gct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	363	728	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
NF2	4771	MSKCC	GRCh37	22	30067884	30067884	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	189	670	0	ENST00000338641.4:c.1069G>T	p.Glu357Ter	p.E357*	ENST00000338641	NM_000268.3	357	Gag/Tag																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2215893	2215893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			836	212	714	1	ENST00000326181.6:c.95C>T	p.Thr32Met	p.T32M	ENST00000326181	NM_032271.2	32	aCg/aTg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0022191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	792	702	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
NF2	4771	MSKCC	GRCh37	22	30070877	30070877	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	247	621	0	ENST00000338641.4:c.1393G>T	p.Glu465Ter	p.E465*	ENST00000338641	NM_000268.3	465	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	192	1025	1	ENST00000269305.4:c.309C>A	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taA																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276723	15276723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	100	991	0	ENST00000263388.2:c.5542C>T	p.Arg1848Cys	p.R1848C	ENST00000263388	NM_000435.2	1848	Cgt/Tgt																																																																														
ATRX	546	MSKCC	GRCh37	X	76777829	76777829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	206	870	1	ENST00000373344.5:c.6887A>T	p.Asn2296Ile	p.N2296I	ENST00000373344	NM_000489.3	2296	aAt/aTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133253136	133253136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	42	660	0	ENST00000320574.5:c.905G>A	p.Gly302Asp	p.G302D	ENST00000320574	NM_006231.2	302	gGc/gAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476387	88476387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202056599		P-0022507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	153	737	0	ENST00000360948.2:c.1745G>A	p.Arg582Gln	p.R582Q	ENST00000360948	NM_001012338.2	582	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0022507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	361	890	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781645	9781645	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0022507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	58	814	0	ENST00000377346.4:c.1955G>C	p.Arg652Pro	p.R652P	ENST00000377346	NM_005026.3	652	cGc/cCc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505526	25505526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	270	903	1	ENST00000264709.3:c.232A>G	p.Met78Val	p.M78V	ENST00000264709	NM_175629.2	78	Atg/Gtg																																																																														
MED12	9968	MSKCC	GRCh37	X	70354956	70354956	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	40	797	0	ENST00000374080.3:c.4878G>C	p.Glu1626Asp	p.E1626D	ENST00000374080		1626	gaG/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	150	731	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472634	88472634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	45	444	0	ENST00000360948.2:c.1921G>T	p.Asp641Tyr	p.D641Y	ENST00000360948	NM_001012338.2	641	Gat/Tat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678488	88678488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	61	702	1	ENST00000360948.2:c.1048G>T	p.Val350Leu	p.V350L	ENST00000360948	NM_001012338.2	350	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	326	649	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	370	641	1	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
MGA	23269	MSKCC	GRCh37	15	41988692	41988692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	79	524	1	ENST00000219905.7:c.1484G>A	p.Arg495Gln	p.R495Q	ENST00000219905	NM_001164273.1	495	cGa/cAa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11958281	11958281	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	103	437	0	ENST00000353533.5:c.191A>G	p.Asn64Ser	p.N64S	ENST00000353533	NM_003010.3	64	aAt/aGt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47690206	47690206	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	100	635	0	ENST00000233146.2:c.1423G>C	p.Asp475His	p.D475H	ENST00000233146	NM_000251.2	475	Gat/Cat																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321460	62321460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	287	774	0	ENST00000508582.2:c.2234G>A	p.Arg745Lys	p.R745K	ENST00000508582		745	aGa/aAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271265	153271266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	125	374	0	ENST00000281708.4:c.512dup	p.Leu172ValfsTer6	p.L172Vfs*6	ENST00000281708	NM_033632.3	171	aag/aaAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	98	397	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TET2	54790	MSKCC	GRCh37	4	106164772	106164772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	50	293	0	ENST00000380013.4:c.3640C>T	p.Arg1214Trp	p.R1214W	ENST00000380013	NM_001127208.2	1214	Cgg/Tgg																																																																														
NF2	4771	MSKCC	GRCh37	22	30051642	30051642	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	59	227	0	ENST00000338641.4:c.576C>A	p.Tyr192Ter	p.Y192*	ENST00000338641	NM_000268.3	192	taC/taA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139397678	139397678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	42	387	0	ENST00000277541.6:c.5123C>T	p.Ser1708Leu	p.S1708L	ENST00000277541	NM_017617.3	1708	tCg/tTg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371712	55371713	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	48	274	0	ENST00000297316.4:c.403dup	p.Tyr135LeufsTer27	p.Y135Lfs*27	ENST00000297316	NM_022454.3	134	-/T																																																																														
MGA	23269	MSKCC	GRCh37	15	42046641	42046642	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0023767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	84	241	0	ENST00000219905.7:c.7018_7019del	p.Val2340ArgfsTer4	p.V2340Rfs*4	ENST00000219905	NM_001164273.1	2339	TGt/t																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254905	16254905	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	50	330	0	ENST00000375759.3:c.2170C>T	p.Arg724Ter	p.R724*	ENST00000375759	NM_015001.2	724	Cga/Tga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2105493	2105504	+	inframe_deletion	In_Frame_Del	DEL	TCGACGAGTACA	TCGACGAGTACA	-			P-0023767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	94	343	0	ENST00000219476.3:c.575_586del	p.Asp192_Ile195del	p.D192_I195del	ENST00000219476	NM_000548.3	191	cTCGACGAGTACAtc/ctc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216558	7216570	+	frameshift_variant	Frame_Shift_Del	DEL	AGCATGTTCCATC	AGCATGTTCCATC	-			P-0023767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	103	327	0	ENST00000380728.2:c.765_777del	p.Met256ThrfsTer85	p.M256Tfs*85	ENST00000380728		255	caGATGGAACATGCT/ca																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128050334	128050334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	93	307	0	ENST00000285398.2:c.323G>A	p.Cys108Tyr	p.C108Y	ENST00000285398	NM_000122.1	108	tGc/tAc																																																																														
HGF	3082	MSKCC	GRCh37	7	81331941	81331941	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	83	241	0	ENST00000222390.5:c.2143T>C	p.Trp715Arg	p.W715R	ENST00000222390	NM_000601.4	715	Tgg/Cgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873483	151873483	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	154	319	0	ENST00000262189.6:c.9055C>T	p.Gln3019Ter	p.Q3019*	ENST00000262189	NM_170606.2	3019	Cag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37667868	37667868	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	253	296	0	ENST00000447079.4:c.2753A>G	p.Asp918Gly	p.D918G	ENST00000447079	NM_015083.1	918	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577519	7577527	+	inframe_deletion	In_Frame_Del	DEL	GATGGTGAG	GATGGTGAG	-			P-0023834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	190	306	0	ENST00000269305.4:c.754_762del	p.Leu252_Ile254del	p.L252_I254del	ENST00000269305	NM_001126112.2	252	CTCACCATC/-																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636031	28636031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	83	347	0	ENST00000241453.7:c.341G>A	p.Cys114Tyr	p.C114Y	ENST00000241453	NM_004119.2	114	tGc/tAc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774204	66774204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	104	521	0	ENST00000307102.5:c.680G>T	p.Arg227Met	p.R227M	ENST00000307102	NM_002755.3	227	aGg/aTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045910	180045910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	42	289	0	ENST00000261937.6:c.2861C>A	p.Pro954His	p.P954H	ENST00000261937	NM_182925.4	954	cCc/cAc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004345	150004345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	66	319	0	ENST00000253339.5:c.1880G>A	p.Arg627Lys	p.R627K	ENST00000253339		627	aGg/aAg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867291	45867291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	288	408	2	ENST00000391945.4:c.902C>T	p.Thr301Met	p.T301M	ENST00000391945	NM_000400.3	301	aCg/aTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342788	118342788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	76	368	0	ENST00000534358.1:c.914G>C	p.Arg305Thr	p.R305T	ENST00000534358	NM_005933.3	305	aGg/aCg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965180	15965180	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	15	201	0	ENST00000268712.3:c.5416A>T	p.Ser1806Cys	p.S1806C	ENST00000268712	NM_006311.3	1806	Agc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937989	76937989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	44	437	1	ENST00000373344.5:c.2759G>T	p.Gly920Val	p.G920V	ENST00000373344	NM_000489.3	920	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	120	503	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211745	36211745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	76	571	0	ENST00000222270.7:c.1496C>A	p.Pro499His	p.P499H	ENST00000222270	NM_014727.1	499	cCc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	42	415	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	93	628	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0024115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	64	545	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981827	101981827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	29	545	0	ENST00000282441.5:c.248C>G	p.Thr83Ser	p.T83S	ENST00000282441	NM_001130145.2	83	aCc/aGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577493	7577497	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCTGA	CCTGA	-			P-0024115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	43	562	0	ENST00000269305.4:c.782+2_782+6del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	332	610	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784000	120784000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	100	610	0	ENST00000257552.2:c.985G>A	p.Val329Ile	p.V329I	ENST00000257552	NM_002442.3	329	Gtc/Atc																																																																														
AXL	558	MSKCC	GRCh37	19	41758301	41758301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	66	613	0	ENST00000301178.4:c.1757C>T	p.Ala586Val	p.A586V	ENST00000301178	NM_021913.4	586	gCg/gTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0024723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	89	585	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0024723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	290	903	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983137	201983137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	174	657	1	ENST00000359651.3:c.986T>C	p.Leu329Pro	p.L329P	ENST00000359651		329	cTg/cCg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435125	18435125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	41	459	1	ENST00000266497.5:c.110G>T	p.Ser37Ile	p.S37I	ENST00000266497		37	aGt/aTt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113091	209113091	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0024723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	31	223	0	ENST00000345146.2:c.414+2T>A		p.X138_splice	ENST00000345146	NM_005896.2	138																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430896	181430896	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	165	912	0	ENST00000325404.1:c.748T>G	p.Ser250Ala	p.S250A	ENST00000325404	NM_003106.3	250	Tcc/Gcc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502249	186502249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	84	307	0	ENST00000323963.5:c.58C>T	p.Pro20Ser	p.P20S	ENST00000323963		20	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	420	788	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274248	5274282	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGGTCACTCGTGGCTTGGGGTCACCCGTGGCC	TCCAGGTCACTCGTGGCTTGGGGTCACCCGTGGCC	-			P-0024726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	311	1045	0	ENST00000357368.4:c.165_199del	p.Ala56GlnfsTer12	p.A56Qfs*12	ENST00000357368	NM_002850.3	55	caGGCCACGGGTGACCCCAAGCCACGAGTGACCTGGAac/caac																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252793	10252793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	183	720	0	ENST00000340748.4:c.3172G>A	p.Gly1058Ser	p.G1058S	ENST00000340748		1058	Ggc/Agc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314919	1314919	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0024726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	28	528	0				ENST00000381566																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0024738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	142	539	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	300	277	0	ENST00000269305.4:c.428T>C	p.Val143Ala	p.V143A	ENST00000269305	NM_001126112.2	143	gTg/gCg																																																																														
RET	5979	MSKCC	GRCh37	10	43609003	43609003	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	118	70	0	ENST00000355710.3:c.1760-1G>T		p.X587_splice	ENST00000355710	NM_020975.4	587																																																																															
CCND2	894	MSKCC	GRCh37	12	4409093	4409093	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	71	95	0	ENST00000261254.3:c.788A>G	p.Gln263Arg	p.Q263R	ENST00000261254	NM_001759.3	263	cAg/cGg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913239	32913239	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	166	85	0	ENST00000380152.3:c.4747A>T	p.Ile1583Phe	p.I1583F	ENST00000380152		1583	Att/Ttt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794428	242794428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	198	151	0	ENST00000334409.5:c.514G>C	p.Gly172Arg	p.G172R	ENST00000334409	NM_005018.2	172	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	71	212	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	13	73	0	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735497	40735497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	200	570	0	ENST00000373198.4:c.3376G>A	p.Glu1126Lys	p.E1126K	ENST00000373198	NM_133170.3	1126	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	986	640	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861257	57861257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	197	497	0	ENST00000228682.2:c.1054C>A	p.Gln352Lys	p.Q352K	ENST00000228682	NM_005269.2	352	Cag/Aag																																																																														
SETD8	0	MSKCC	GRCh37	12	123889436	123889436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	132	394	0	ENST00000330479.4:c.663C>A	p.Asp221Glu	p.D221E	ENST00000330479	NM_020382.3	221	gaC/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0025026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	241	547	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	54	362	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																																																														
POLE	5426	MSKCC	GRCh37	12	133201277	133201287	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GGCTGGCTAAT	GGCTGGCTAAT	-			P-0025026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	144	310	0	ENST00000320574.5:c.6857_*6del		p.*2286*	ENST00000320574	NM_006231.2	2286																																																																															
UPF1	5976	MSKCC	GRCh37	19	18968237	18968237	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	207	525	1	ENST00000262803.5:c.2077A>G	p.Ile693Val	p.I693V	ENST00000262803	NM_002911.3	693	Atc/Gtc																																																																														
ATRX	546	MSKCC	GRCh37	X	76891420	76891420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	134	494	0	ENST00000373344.5:c.4685C>T	p.Pro1562Leu	p.P1562L	ENST00000373344	NM_000489.3	1562	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576865	7576866	+	stop_gained	Nonsense_Mutation	INS	-	-	TAT			P-0025946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	291	529	0	ENST00000269305.4:c.978_980dup	p.Glu326_Tyr327insTer	p.E326_Y327ins*	ENST00000269305	NM_001126112.2	327	tat/taATAt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001159	150001159	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	202	469	0	ENST00000253339.5:c.2445del	p.Val816LeufsTer20	p.V816Lfs*20	ENST00000253339		815	gcA/gc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410486	63410487	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0025946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	268	560	0	ENST00000330258.3:c.2680_2681delinsA	p.Arg894ThrfsTer82	p.R894Tfs*82	ENST00000330258	NM_152424.3	894	CGc/Ac																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115284260	115284260	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	141	582	0	ENST00000438362.2:c.26C>G	p.Ser9Ter	p.S9*	ENST00000438362	NM_001242891.1	9	tCa/tGa																																																																														
MGA	23269	MSKCC	GRCh37	15	42035101	42035101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	199	710	0	ENST00000219905.7:c.4943C>G	p.Ser1648Cys	p.S1648C	ENST00000219905	NM_001164273.1	1648	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	225	744	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	421	552	1	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	123	652	1	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774121	66774121	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	222	776	0	ENST00000307102.5:c.597C>G	p.Asn199Lys	p.N199K	ENST00000307102	NM_002755.3	199	aaC/aaG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577098	7577099	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0027262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	494	648	0	ENST00000269305.4:c.839_840delinsTT	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGA/aTT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246029	41246029	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	509	715	0	ENST00000357654.3:c.1519del	p.Arg507AspfsTer25	p.R507Dfs*25	ENST00000357654	NM_007294.3	507	Aga/ga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651379	52651379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	294	674	0	ENST00000394830.3:c.1717C>G	p.His573Asp	p.H573D	ENST00000394830	NM_018313.4	573	Cat/Gat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029267-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			73	283	826	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032279	10032279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029267-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			252	187	649	0	ENST00000330684.3:c.544G>A	p.Glu182Lys	p.E182K	ENST00000330684	NM_001134407.1	182	Gaa/Aaa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348076	348076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029267-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			545	266	819	1	ENST00000262320.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000262320	NM_003502.3	477	cGt/cAt																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246091312	246091312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029267-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			176	290	547	0	ENST00000388985.4:c.623G>T	p.Cys208Phe	p.C208F	ENST00000388985		208	tGt/tTt																																																																														
EED	8726	MSKCC	GRCh37	11	85988037	85988037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029267-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			224	32	236	0	ENST00000263360.6:c.982A>G	p.Ile328Val	p.I328V	ENST00000263360	NM_003797.3	328	Att/Gtt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30133065	30133065	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029267-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			154	31	418	0	ENST00000331968.5:c.536G>A	p.Gly179Glu	p.G179E	ENST00000331968	NM_002742.2	179	gGg/gAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590683	95590683	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029267-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			67	46	378	0	ENST00000343455.3:c.1226A>C	p.Tyr409Ser	p.Y409S	ENST00000343455	NM_177438.2	409	tAt/tCt																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647653	2647653	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0029267-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			387	150	596	0	ENST00000342085.4:c.1556C>G	p.Pro519Arg	p.P519R	ENST00000342085	NM_002613.4	519	cCt/cGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55598036	55598036	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029267-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			178	24	388	0	ENST00000288135.5:c.2234-1G>T		p.X745_splice	ENST00000288135	NM_000222.2	745																																																																															
BRAF	673	MSKCC	GRCh37	7	140534504	140534504	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029267-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			393	46	548	0	ENST00000288602.6:c.409G>C	p.Val137Leu	p.V137L	ENST00000288602	NM_004333.4	137	Gtt/Ctt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5123011	5123011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029267-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			167	26	354	0	ENST00000381652.3:c.3067C>T	p.Pro1023Ser	p.P1023S	ENST00000381652	NM_004972.3	1023	Cca/Tca																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220611	123220611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029267-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			173	62	464	0	ENST00000218089.9:c.3268C>G	p.Leu1090Val	p.L1090V	ENST00000218089	NM_001042749.1	1090	Ctt/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	168	527	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KDR	3791	MSKCC	GRCh37	4	55964430	55964430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	52	353	0	ENST00000263923.4:c.2383G>A	p.Gly795Arg	p.G795R	ENST00000263923	NM_002253.2	795	Ggg/Agg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111102	193111102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	51	284	0	ENST00000367435.3:c.635G>A	p.Ser212Asn	p.S212N	ENST00000367435	NM_024529.4	212	aGt/aAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858234	9858234	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	62	368	0	ENST00000330684.3:c.3167T>C	p.Met1056Thr	p.M1056T	ENST00000330684	NM_001134407.1	1056	aTg/aCg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127389	55127389	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	61	520	0	ENST00000257290.5:c.180del	p.Met61CysfsTer22	p.M61Cfs*22	ENST00000257290	NM_006206.4	59	taC/ta																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056292	26056292	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	88	391	0	ENST00000343677.2:c.365A>G	p.Lys122Arg	p.K122R	ENST00000343677	NM_005319.3	122	aAg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578259	7578259	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	512	742	0	ENST00000269305.4:c.590T>G	p.Val197Gly	p.V197G	ENST00000269305	NM_001126112.2	197	gTg/gGg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012392	176012392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	258	392	0	ENST00000367669.3:c.1542G>T	p.Lys514Asn	p.K514N	ENST00000367669	NM_022457.5	514	aaG/aaT																																																																														
NUP93	9688	MSKCC	GRCh37	16	56862985	56863000	+	frameshift_variant	Frame_Shift_Del	DEL	GAACATTAAACTGCCA	GAACATTAAACTGCCA	-			P-0030836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	79	498	0	ENST00000308159.5:c.892_907del	p.Asn298LeufsTer19	p.N298Lfs*19	ENST00000308159	NM_014669.4	297	ctGAACATTAAACTGCCA/ct																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1805555	1805555	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	136	574	1	ENST00000260795.2:c.1067T>C	p.Val356Ala	p.V356A	ENST00000260795		356	gTg/gCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	543	797	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
TERT	7015	MSKCC	GRCh37	5	1272334	1272334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	73	781	0	ENST00000310581.5:c.2348C>G	p.Thr783Ser	p.T783S	ENST00000310581	NM_198253.2	783	aCc/aGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	492	700	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120789171	120789171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	162	388	0	ENST00000257552.2:c.766G>T	p.Ala256Ser	p.A256S	ENST00000257552	NM_002442.3	256	Gcc/Tcc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864585	37864585	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	134	464	0	ENST00000269571.5:c.237G>C	p.Glu79Asp	p.E79D	ENST00000269571		79	gaG/gaC																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967783	18967783	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	243	744	0	ENST00000262803.5:c.1922C>G	p.Ala641Gly	p.A641G	ENST00000262803	NM_002911.3	641	gCc/gGc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127321	55127321	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	152	493	0	ENST00000257290.5:c.109A>T	p.Lys37Ter	p.K37*	ENST00000257290	NM_006206.4	37	Aag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638380	117638380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	28	476	4	ENST00000368508.3:c.6061C>T	p.Pro2021Ser	p.P2021S	ENST00000368508	NM_002944.2	2021	Ccc/Tcc																																																																														
NF2	4771	MSKCC	GRCh37	22	30074250	30074250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	35	587	0	ENST00000338641.4:c.1512C>G	p.Ser504Arg	p.S504R	ENST00000338641	NM_000268.3	504	agC/agG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0037553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	349	851	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																														
RET	5979	MSKCC	GRCh37	10	43595991	43595991	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	93	859	0	ENST00000355710.3:c.158T>C	p.Val53Ala	p.V53A	ENST00000355710	NM_020975.4	53	gTc/gCc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627838	37627838	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	196	760	0	ENST00000447079.4:c.1757del	p.Pro586LeufsTer24	p.P586Lfs*24	ENST00000447079	NM_015083.1	585	Ccc/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	162	466	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs559063155		P-0038049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	160	651	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021658	31021658	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	156	569	1	ENST00000375687.4:c.1657G>T	p.Glu553Ter	p.E553*	ENST00000375687	NM_015338.5	553	Gaa/Taa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004254	29004254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143093353		P-0038097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	67	344	0	ENST00000282397.4:c.1039G>A	p.Val347Ile	p.V347I	ENST00000282397	NM_002019.4	347	Gta/Ata																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514305	69514305	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	103	600	0	ENST00000294312.3:c.376A>G	p.Ile126Val	p.I126V	ENST00000294312	NM_005117.2	126	Atc/Gtc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244578	46244578	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	119	538	0	ENST00000334344.6:c.2672T>A	p.Val891Glu	p.V891E	ENST00000334344	NM_152641.2	891	gTa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578483	7578488	+	inframe_deletion	In_Frame_Del	DEL	GGAATC	GGAATC	-			P-0038097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	470	841	2	ENST00000269305.4:c.442_447del	p.Asp148_Ser149del	p.D148_S149del	ENST00000269305	NM_001126112.2	148	GATTCC/-																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873619	35873619	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	49	232	0	ENST00000303115.3:c.575A>G	p.Gln192Arg	p.Q192R	ENST00000303115	NM_002185.3	192	cAg/cGg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650747	48650747	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	92	655	0	ENST00000376670.3:c.616A>G	p.Asn206Asp	p.N206D	ENST00000376670	NM_002049.3	206	Aac/Gac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	319	798	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057911	27057911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	95	782	1	ENST00000324856.7:c.1619C>T	p.Thr540Met	p.T540M	ENST00000324856	NM_006015.4	540	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	377	463	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0038499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	98	160	0	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29541543	29541546	+	frameshift_variant	Frame_Shift_Del	DEL	TAAG	TAAG	-			P-0038499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	90	361	0	ENST00000358273.4:c.1469_1472del	p.Lys490IlefsTer7	p.K490Ifs*7	ENST00000358273	NM_001042492.2	489	taTAAG/ta																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933786	36933786	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	34	697	0	ENST00000361632.4:c.1613T>C	p.Ile538Thr	p.I538T	ENST00000361632		538	aTt/aCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578269	7578271	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0038649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	124	708	0	ENST00000269305.4:c.578_580del	p.His193del	p.H193del	ENST00000269305	NM_001126112.2	193	cATCtt/ctt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	533	572	2	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292531	15292531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	611	855	1	ENST00000263388.2:c.2648G>A	p.Arg883Gln	p.R883Q	ENST00000263388	NM_000435.2	883	cGa/cAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217303	123217303	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	136	507	0	ENST00000218089.9:c.2957A>T	p.Asn986Ile	p.N986I	ENST00000218089	NM_001042749.1	986	aAt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	261	572	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119234	3119234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	11	606	0	ENST00000078429.4:c.766C>T	p.Arg256Trp	p.R256W	ENST00000078429	NM_002067.2	256	Cgg/Tgg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954022	32954023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1305653361		P-0039012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	65	416	8	ENST00000380152.3:c.9097dup	p.Thr3033AsnfsTer11	p.T3033Nfs*11	ENST00000380152		3030	aca/acAa																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599968	28599968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	273	641	3	ENST00000253063.3:c.850G>T	p.Glu284Ter	p.E284*	ENST00000253063	NM_031459.4	284	Gag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	48953768	48953768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	121	215	0	ENST00000267163.4:c.1371G>A	p.Met457Ile	p.M457I	ENST00000267163	NM_000321.2	457	atG/atA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562684	95562684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	73	309	0	ENST00000343455.3:c.4573G>A	p.Val1525Met	p.V1525M	ENST00000343455	NM_177438.2	1525	Gtg/Atg																																																																														
RB1	5925	MSKCC	GRCh37	13	49050954	49050954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	21	294	0	ENST00000267163.4:c.2638G>A	p.Glu880Lys	p.E880K	ENST00000267163	NM_000321.2	880	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29683976	29683976	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0039468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	191	430	0	ENST00000358273.4:c.7739-2A>G		p.X2580_splice	ENST00000358273	NM_001042492.2	2580																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861842	57861842	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	268	622	0	ENST00000228682.2:c.1143A>T	p.Lys381Asn	p.K381N	ENST00000228682	NM_005269.2	381	aaA/aaT																																																																														
RB1	5925	MSKCC	GRCh37	13	48923110	48923144	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGCATTGGTGCTAAAAGTTTCTTGGATCACAT	TTCTGCATTGGTGCTAAAAGTTTCTTGGATCACAT	-			P-0039468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	15	218	0	ENST00000267163.4:c.560_594del	p.Ser187PhefsTer4	p.S187Ffs*4	ENST00000267163	NM_000321.2	186	aaTTCTGCATTGGTGCTAAAAGTTTCTTGGATCACATtt/aatt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577587	7577592	+	inframe_deletion	In_Frame_Del	DEL	TGGTGG	TGGTGG	-			P-0039468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	214	592	0	ENST00000269305.4:c.689_694del	p.Thr230_Thr231del	p.T230_T231del	ENST00000269305	NM_001126112.2	230	aCCACCAtc/atc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245198	41245198	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	294	612	0	ENST00000357654.3:c.2350del	p.Ser784ArgfsTer8	p.S784Rfs*8	ENST00000357654	NM_007294.3	784	Tcg/cg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998189	169998189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	219	443	0	ENST00000295797.4:c.880G>A	p.Glu294Lys	p.E294K	ENST00000295797	NM_002740.5	294	Gag/Aag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228159	53228159	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	153	361	0	ENST00000375401.3:c.2243G>A	p.Arg748Gln	p.R748Q	ENST00000375401	NM_004187.3	748	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	349	354	0	ENST00000269305.4:c.577C>G	p.His193Asp	p.H193D	ENST00000269305	NM_001126112.2	193	Cat/Gat																																																																														
TOP1	7150	MSKCC	GRCh37	20	39690066	39690066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	83	327	1	ENST00000361337.2:c.91C>T	p.Arg31Ter	p.R31*	ENST00000361337	NM_003286.2	31	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0039798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	541	689	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061570	38061581	+	inframe_deletion	In_Frame_Del	DEL	GGGCTCATGCAC	GGGCTCATGCAC	-			P-0039798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	15	79	0	ENST00000250448.2:c.408_419del	p.Cys137_Pro140del	p.C137_P140del	ENST00000250448	NM_004496.3	136	ccGTGCATGAGCCCc/ccc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061594	38061596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0039798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	15	90	0	ENST00000250448.2:c.393_395del	p.Ala133del	p.A133del	ENST00000250448	NM_004496.3	131	gcGGCc/gcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980831	40980831	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1623	332	736	0	ENST00000373198.4:c.1655T>A	p.Leu552His	p.L552H	ENST00000373198	NM_133170.3	552	cTc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271227	153271227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	10	312	0	ENST00000281708.4:c.551G>T	p.Gly184Val	p.G184V	ENST00000281708	NM_033632.3	184	gGa/gTa																																																																														
SDHA	6389	MSKCC	GRCh37	5	240490	240490	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	28	174	0	ENST00000264932.6:c.1450A>G	p.Ile484Val	p.I484V	ENST00000264932	NM_004168.2	484	Att/Gtt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812260	212812260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	46	286	0	ENST00000342788.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000342788	NM_005235.2	106	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578234	7578234	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	1784	656	0	ENST00000269305.4:c.615T>A	p.Tyr205Ter	p.Y205*	ENST00000269305	NM_001126112.2	205	taT/taA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061727	38061727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	152	490	0	ENST00000250448.2:c.262G>A	p.Gly88Ser	p.G88S	ENST00000250448	NM_004496.3	88	Ggc/Agc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227972	55227972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	60	364	0	ENST00000275493.2:c.1439T>C	p.Leu480Pro	p.L480P	ENST00000275493	NM_005228.3	480	cTg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0043550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	444	506	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
RET	5979	MSKCC	GRCh37	10	43622047	43622047	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	78	380	0	ENST00000355710.3:c.3064A>G	p.Thr1022Ala	p.T1022A	ENST00000355710	NM_020975.4	1022	Act/Gct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107183	27107183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			681	101	487	0	ENST00000324856.7:c.6794C>T	p.Pro2265Leu	p.P2265L	ENST00000324856	NM_006015.4	2265	cCg/cTg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527935	103527935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	30	240	1	ENST00000355739.4:c.3243G>T	p.Lys1081Asn	p.K1081N	ENST00000355739	NM_000123.3	1081	aaG/aaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55968604	55968604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			848	100	423	0	ENST00000263923.4:c.2059T>C	p.Ser687Pro	p.S687P	ENST00000263923	NM_002253.2	687	Tca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577591	7577591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	614	591	0	ENST00000269305.4:c.690del	p.Thr231ProfsTer16	p.T231Pfs*16	ENST00000269305	NM_001126112.2	230	acC/ac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258079	16258079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	289	494	0	ENST00000375759.3:c.5344G>A	p.Asp1782Asn	p.D1782N	ENST00000375759	NM_015001.2	1782	Gat/Aat																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10249141	10249141	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	207	838	0	ENST00000340748.4:c.4041C>G	p.Asp1347Glu	p.D1347E	ENST00000340748		1347	gaC/gaG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151868351	151868351	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0044349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	116	441	0	ENST00000262189.6:c.9451C>T	p.Gln3151Ter	p.Q3151*	ENST00000262189	NM_170606.2	3151	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	936	824	2	ENST00000269305.4:c.472del	p.Arg158AlafsTer12	p.R158Afs*12	ENST00000269305	NM_001126112.2	158	Cgc/gc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027764	48027764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	114	335	0	ENST00000234420.5:c.2642G>A	p.Gly881Asp	p.G881D	ENST00000234420	NM_000179.2	881	gGt/gAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295133	15295133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	295	823	0	ENST00000263388.2:c.2539G>C	p.Asp847His	p.D847H	ENST00000263388	NM_000435.2	847	Gat/Cat																																																																														
EZH2	2146	MSKCC	GRCh37	7	148507480	148507480	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	142	371	1	ENST00000320356.2:c.1974A>T	p.Arg658Ser	p.R658S	ENST00000320356	NM_004456.4	658	agA/agT																																																																														
TP53	7157	MSKCC	GRCh37	17	7579472	7579473	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0045432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	323	949	1	ENST00000269305.4:c.214_215delinsG	p.Pro72AlafsTer51	p.P72Afs*51	ENST00000269305	NM_001126112.2	72	CCc/Gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	273	624	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0045544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	189	546	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041509	14041509	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	136	345	1	ENST00000311895.7:c.2056G>T	p.Val686Leu	p.V686L	ENST00000311895	NM_005236.2	686	Gtg/Ttg																																																																														
REL	5966	MSKCC	GRCh37	2	61147727	61147727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	86	210	0	ENST00000295025.8:c.1037C>G	p.Pro346Arg	p.P346R	ENST00000295025	NM_002908.2	346	cCa/cGa																																																																														
PAK7	0	MSKCC	GRCh37	20	9624773	9624773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0045544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	379	342	0	ENST00000353224.5:c.204G>T	p.Lys68Asn	p.K68N	ENST00000353224	NM_177990.2	68	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0048508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	36	513	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	435	472	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350120	89350120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	134	565	0	ENST00000301030.4:c.2830T>C	p.Ser944Pro	p.S944P	ENST00000301030	NM_001256183.1	944	Tcc/Ccc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53244001	53244001	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	134	538	0	ENST00000375401.3:c.992C>A	p.Ser331Tyr	p.S331Y	ENST00000375401	NM_004187.3	331	tCt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0005745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	241	941	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
B2M	567	MSKCC	GRCh37	15	45003746	45003746	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0005745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	128	723	0	ENST00000558401.1:c.2T>C	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	aTg/aCg																																																																														
CASP8	841	MSKCC	GRCh37	2	202149683	202149683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	123	890	0	ENST00000358485.4:c.1124C>T	p.Ser375Phe	p.S375F	ENST00000358485	NM_001080125.1	375	tCc/tTc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205651	128205651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	56	751	0	ENST00000341105.2:c.224C>G	p.Ala75Gly	p.A75G	ENST00000341105	NM_032638.4	75	gCg/gGg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346975	89346975	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	120	663	0	ENST00000301030.4:c.5975A>G	p.Lys1992Arg	p.K1992R	ENST00000301030	NM_001256183.1	1992	aAg/aGg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17122418	17122418	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138031155		P-0013641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	142	704	0	ENST00000285071.4:c.977C>T	p.Pro326Leu	p.P326L	ENST00000285071	NM_144997.5	326	cCg/cTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274328	5274328	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs115231439		P-0013641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	99	501	0	ENST00000357368.4:c.119A>G	p.Lys40Arg	p.K40R	ENST00000357368	NM_002850.3	40	aAg/aGg																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793236	33793236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	11	116	1	ENST00000498907.2:c.85G>A	p.Ala29Thr	p.A29T	ENST00000498907	NM_004364.3	29	Gcc/Acc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672012	30672012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1481	158	856	0	ENST00000376406.3:c.4948C>T	p.Pro1650Ser	p.P1650S	ENST00000376406	NM_014641.2	1650	Ccc/Tcc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87322811	87322811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	58	537	0	ENST00000277120.3:c.412C>A	p.Leu138Ile	p.L138I	ENST00000277120		138	Ctt/Att																																																																														
MED12	9968	MSKCC	GRCh37	X	70348291	70348291	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	182	693	0	ENST00000374080.3:c.3354+1G>A		p.X1118_splice	ENST00000374080		1118																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	931	1093	1	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876397	35876397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	125	816	0	ENST00000303115.3:c.1189G>A	p.Gly397Arg	p.G397R	ENST00000303115	NM_002185.3	397	Ggg/Agg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342504	118342504	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	59	511	0	ENST00000534358.1:c.630C>G	p.Ile210Met	p.I210M	ENST00000534358	NM_005933.3	210	atC/atG																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807837	3807837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	98	716	0	ENST00000262367.5:c.3582G>T	p.Gln1194His	p.Q1194H	ENST00000262367	NM_004380.2	1194	caG/caT																																																																														
EP300	2033	MSKCC	GRCh37	22	41521969	41521969	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	110	995	0	ENST00000263253.7:c.831A>C	p.Lys277Asn	p.K277N	ENST00000263253	NM_001429.3	277	aaA/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	19	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	44	617	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0046672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	20	249	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0046672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	20	249	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	444	493	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			144	209	680	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0007216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			146	132	344	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0007216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	53	379	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	326	388	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106072	8106072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	134	540	1	ENST00000346208.3:c.892C>T	p.Arg298Trp	p.R298W	ENST00000346208		298	Cgg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47166034	47166034	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	71	354	0	ENST00000409792.3:c.92A>C	p.Lys31Thr	p.K31T	ENST00000409792	NM_014159.6	31	aAg/aCg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450293	50450293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	59	531	0	ENST00000331340.3:c.477C>A	p.Asn159Lys	p.N159K	ENST00000331340	NM_006060.4	159	aaC/aaA																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602575	10602575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	79	687	0	ENST00000171111.5:c.1003T>G	p.Phe335Val	p.F335V	ENST00000171111	NM_203500.1	335	Ttc/Gtc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939455	71939455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	106	737	0	ENST00000298229.2:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000298229	NM_001567.3	104	Cag/Tag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434115	121434115	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	98	635	0	ENST00000257555.6:c.1006A>C	p.Ser336Arg	p.S336R	ENST00000257555		336	Agc/Cgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893406	32893407	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0007216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			524	63	347	0	ENST00000380152.3:c.262_263del	p.Leu88AlafsTer12	p.L88Afs*12	ENST00000380152		87	aCT/a																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78931471	78931471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	65	654	0	ENST00000306801.3:c.3418A>G	p.Ser1140Gly	p.S1140G	ENST00000306801	NM_020761.2	1140	Agc/Ggc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30132982	30132982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	153	467	0	ENST00000331968.5:c.619G>T	p.Val207Phe	p.V207F	ENST00000331968	NM_002742.2	207	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	399	448	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14629060	14629274	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	GTCCGGGTGGTAGCGCAGCGCCTGGCGGCGGTAGGCCCGCTTGATCTCCTCGTCCGACGCGCCGCGGGCCAGGCCCAACGTCTGGTAGTAGTCTTTACCCATGACCCCCTCCTGCGGCCCGCCGACCCGCTGTCGCCGTCCCCCGGCTCCGCCGCCGACCAGTCCCGGACTCTATATACCCGTCCGGCGGAAGCTTCCAGAGCCCGCCAGCCCCC	GTCCGGGTGGTAGCGCAGCGCCTGGCGGCGGTAGGCCCGCTTGATCTCCTCGTCCGACGCGCCGCGGGCCAGGCCCAACGTCTGGTAGTAGTCTTTACCCATGACCCCCTCCTGCGGCCCGCCGACCCGCTGTCGCCGTCCCCCGGCTCCGCCGCCGACCAGTCCCGGACTCTATATACCCGTCCGGCGGAAGCTTCCAGAGCCCGCCAGCCCCC	-			P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	104	360	0				ENST00000254322	NM_006145.1			1/3																																																																													
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	210	260	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287398	38287398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	496	352	1	ENST00000425967.3:c.259C>T	p.Arg87Cys	p.R87C	ENST00000425967	NM_001174067.1	87	Cgc/Tgc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287433	38287433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	486	329	0	ENST00000425967.3:c.224C>T	p.Ser75Phe	p.S75F	ENST00000425967	NM_001174067.1	75	tCc/tTc																																																																														
LYN	4067	MSKCC	GRCh37	8	56863253	56863253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	773	461	0	ENST00000519728.1:c.397G>T	p.Asp133Tyr	p.D133Y	ENST00000519728	NM_002350.3	133	Gat/Tat																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	246	647	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	595	743	3	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435487	110435487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1420	427	853	6	ENST00000375856.3:c.2914C>T	p.Arg972Trp	p.R972W	ENST00000375856	NM_003749.2	972	Cgg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943760	9943760	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	284	674	0	ENST00000330684.3:c.1181A>T	p.Lys394Met	p.K394M	ENST00000330684	NM_001134407.1	394	aAg/aTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437558	56437558	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	301	804	2	ENST00000407977.2:c.904T>C	p.Trp302Arg	p.W302R	ENST00000407977		302	Tgg/Cgg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12633242	12633242	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	128	797	0	ENST00000251849.4:c.1158A>T	p.Gln386His	p.Q386H	ENST00000251849	NM_002880.3	386	caA/caT																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178500	56178500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	137	358	3	ENST00000399503.3:c.3473C>T	p.Pro1158Leu	p.P1158L	ENST00000399503	NM_005921.1	1158	cCt/cTt																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0024292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	35	388	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	85	544	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0024292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	100	587	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0024292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	57	424	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285116	15285116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	52	623	0	ENST00000263388.2:c.4499G>A	p.Cys1500Tyr	p.C1500Y	ENST00000263388	NM_000435.2	1500	tGt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0032269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	285	609	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1523	1065	214	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492920	56492920	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	19	194	0	ENST00000407977.2:c.19C>G	p.Leu7Val	p.L7V	ENST00000407977		7	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	281	515	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	202	426	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161398	55161398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	174	294	0	ENST00000257290.5:c.3229G>A	p.Gly1077Ser	p.G1077S	ENST00000257290	NM_006206.4	1077	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	285	539	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175447	112175447	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	183	356	0	ENST00000257430.4:c.4156A>T	p.Arg1386Ter	p.R1386*	ENST00000257430	NM_000038.5	1386	Aga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356248	66356248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202046693		P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	163	654	0	ENST00000273854.3:c.1249C>T	p.Arg417Trp	p.R417W	ENST00000273854	NM_004439.5	417	Cgg/Tgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9520141	9520141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	132	493	1	ENST00000353224.5:c.2128G>A	p.Val710Ile	p.V710I	ENST00000353224	NM_177990.2	710	Gtc/Atc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099063	27099064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	159	553	0	ENST00000324856.7:c.3482dup	p.Pro1162AlafsTer31	p.P1162Afs*31	ENST00000324856	NM_006015.4	1160	tta/ttAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831822	72831822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	203	886	1	ENST00000268489.5:c.4759C>A	p.Pro1587Thr	p.P1587T	ENST00000268489	NM_006885.3	1587	Ccc/Acc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554422	63554422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	170	719	0	ENST00000307078.5:c.317A>G	p.Asp106Gly	p.D106G	ENST00000307078	NM_004655.3	106	gAt/gGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47142987	47142987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	149	542	0	ENST00000409792.3:c.4976G>T	p.Gly1659Val	p.G1659V	ENST00000409792	NM_014159.6	1659	gGc/gTc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912658	29912852	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAGGAGGGCTATTGGTCCAGGACCCACACCTGCTTTCTTCATGTTTCCTGATCCCGCCCTGGGTCTGCAGTCACACATTTCTGGAAACTTCTCTGGGGTCCAAGACTAGGAGGTTCCTCTAGGACCTTAAGGCCCTGGCTCCTTTCTGGTATCTCACAGGACATTTTCTTCTCACAGATAGAAAAGGAGGGAGT	TCAGGAGGGCTATTGGTCCAGGACCCACACCTGCTTTCTTCATGTTTCCTGATCCCGCCCTGGGTCTGCAGTCACACATTTCTGGAAACTTCTCTGGGGTCCAAGACTAGGAGGTTCCTCTAGGACCTTAAGGCCCTGGCTCCTTTCTGGTATCTCACAGGACATTTTCTTCTCACAGATAGAAAAGGAGGGAGT	-			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	91	142	0	ENST00000376809.5:c.1013-177_1030del		p.X338_splice	ENST00000376809	NM_002116.7	338																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900180	101900180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	94	369	0	ENST00000374994.4:c.614T>C	p.Ile205Thr	p.I205T	ENST00000374994	NM_004612.2	205	aTt/aCt																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0034036-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			135	96	189	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0034036-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			173	28	124	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508535	106508535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034036-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			245	106	269	0	ENST00000359195.3:c.529C>T	p.Arg177Cys	p.R177C	ENST00000359195	NM_002649.2	177	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112173624	112173625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034036-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			139	86	177	0	ENST00000257430.4:c.2336dup	p.Leu779PhefsTer9	p.L779Ffs*9	ENST00000257430	NM_000038.5	778	aat/aaTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1293800	1293800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034036-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			753	95	764	0	ENST00000310581.5:c.1201G>A	p.Ala401Thr	p.A401T	ENST00000310581	NM_198253.2	401	Gcg/Acg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911133	32911133	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034036-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			125	50	178	0	ENST00000380152.3:c.2641G>C	p.Glu881Gln	p.E881Q	ENST00000380152		881	Gaa/Caa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45394807	45394807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034036-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			182	59	164	0	ENST00000262160.6:c.542C>T	p.Pro181Leu	p.P181L	ENST00000262160	NM_005901.5	181	cCc/cTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031681	69031681	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034036-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			339	21	236	0	ENST00000288368.4:c.3436T>A	p.Leu1146Ile	p.L1146I	ENST00000288368	NM_024870.2	1146	Tta/Ata																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5534885	5534885	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034036-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			399	95	304	0	ENST00000397747.3:c.196A>C	p.Thr66Pro	p.T66P	ENST00000397747	NM_025239.3	66	Aca/Cca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	73	392	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	103	388	0	ENST00000359013.4:c.449A>G	p.Glu150Gly	p.E150G	ENST00000359013	NM_001024847.2	150	gAa/gGa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473616	67473616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	162	463	0	ENST00000327367.4:c.696G>T	p.Trp232Cys	p.W232C	ENST00000327367	NM_005902.3	232	tgG/tgT																																																																														
APC	324	MSKCC	GRCh37	5	112175219	112175219	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	82	177	0	ENST00000257430.4:c.3928A>T	p.Lys1310Ter	p.K1310*	ENST00000257430	NM_000038.5	1310	Aag/Tag																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093411	30093411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201154555		P-0035716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	145	528	0	ENST00000331968.5:c.1852C>T	p.Arg618Ter	p.R618*	ENST00000331968	NM_002742.2	618	Cga/Tga																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400830	72400830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	39	333	1	ENST00000357731.5:c.341G>A	p.Gly114Asp	p.G114D	ENST00000357731	NM_173808.2	114	gGc/gAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710541	114710550	+	frameshift_variant	Frame_Shift_Del	DEL	GGGATGACCT	GGGATGACCT	-			P-0035716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	74	237	0	ENST00000543371.1:c.26_35del	p.Gly9GlufsTer7	p.G9Efs*7	ENST00000543371	NM_001198531.1	9	gGGGATGACCTa/ga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137000	64137000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	125	392	1	ENST00000334205.4:c.1511C>T	p.Ser504Leu	p.S504L	ENST00000334205	NM_003942.2	504	tCg/tTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024379	16024379	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	130	311	0	ENST00000268712.3:c.1839del	p.Pro614HisfsTer27	p.P614Hfs*27	ENST00000268712	NM_006311.3	613	ccG/cc																																																																														
NF1	4763	MSKCC	GRCh37	17	29653086	29653086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	35	305	0	ENST00000358273.4:c.5084G>A	p.Arg1695Gln	p.R1695Q	ENST00000358273	NM_001042492.2	1695	cGg/cAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483937	212483937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	47	470	0	ENST00000342788.4:c.2266A>G	p.Thr756Ala	p.T756A	ENST00000342788	NM_005235.2	756	Aca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	96	529	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	64	277	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	82	260	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	182	430	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579713	7579713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	119	635	0	ENST00000269305.4:c.83A>T	p.Glu28Val	p.E28V	ENST00000269305	NM_001126112.2	28	gAa/gTa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86629102	86629102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	61	291	0	ENST00000274376.6:c.847C>T	p.Arg283Cys	p.R283C	ENST00000274376	NM_002890.2	283	Cgt/Tgt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2949727	2949727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	197	880	0	ENST00000396946.4:c.3217G>A	p.Val1073Met	p.V1073M	ENST00000396946	NM_032415.4	1073	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0036633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	90	697	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	87	710	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0036633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	21	291	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006897	47006897	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	159	772	1	ENST00000329236.7:c.17G>A	p.Arg6His	p.R6H	ENST00000329236	NM_001204466.1	6	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	365	622	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	85	280	1	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	56	345	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562387	21562387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	370	528	0	ENST00000382592.4:c.1532G>A	p.Arg511Gln	p.R511Q	ENST00000382592	NM_014572.2	511	cGg/cAg																																																																														
AC008738.1	0	MSKCC	GRCh37	19	33792755	33792757	+	splice_acceptor_variant,intron_variant,non_coding_transcript_variant	Splice_Site	DEL	GGC	GGC	-	rs781757114		P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	17	73	0	ENST00000425420.2:n.247-4_247-2del		p.X83_splice	ENST00000425420		83																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	298	518	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670843	134670843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	139	363	1	ENST00000398015.3:c.754C>T	p.Arg252Ter	p.R252*	ENST00000398015	NM_004441.4	252	Cga/Tga																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622057	1622057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	227	762	0	ENST00000344749.5:c.818G>A	p.Arg273His	p.R273H	ENST00000344749	NM_001136139.2	273	cGt/cAt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467988	50467988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	225	450	0	ENST00000331340.3:c.1223G>A	p.Arg408His	p.R408H	ENST00000331340	NM_006060.4	408	cGc/cAc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48651681	48651681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	348	320	1	ENST00000376670.3:c.847G>A	p.Gly283Ser	p.G283S	ENST00000376670	NM_002049.3	283	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	52	408	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480345	89480345	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	23	267	0	ENST00000336596.2:c.2182C>T	p.Arg728Ter	p.R728*	ENST00000336596	NM_005233.5	728	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	79	501	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
EP300	2033	MSKCC	GRCh37	22	41545898	41545898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	149	670	0	ENST00000263253.7:c.2513G>A	p.Arg838His	p.R838H	ENST00000263253	NM_001429.3	838	cGt/cAt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288765	33288765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	79	433	1	ENST00000374542.5:c.787C>T	p.Arg263Cys	p.R263C	ENST00000374542	NM_001141970.1	263	Cgc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	42041903	42041903	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	15	442	0	ENST00000219905.7:c.6098A>C	p.Asp2033Ala	p.D2033A	ENST00000219905	NM_001164273.1	2033	gAt/gCt																																																																														
ALK	238	MSKCC	GRCh37	2	30143351	30143351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	43	323	0	ENST00000389048.3:c.175G>T	p.Val59Leu	p.V59L	ENST00000389048	NM_004304.4	59	Gtg/Ttg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285296	212285296	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	29	366	0	ENST00000342788.4:c.3005A>G	p.Lys1002Arg	p.K1002R	ENST00000342788	NM_005235.2	1002	aAg/aGg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576886	212576886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	15	320	0	ENST00000342788.4:c.1013G>A	p.Gly338Asp	p.G338D	ENST00000342788	NM_005235.2	338	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175544	112175545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	23	270	0	ENST00000257430.4:c.4255dup	p.Ser1419LysfsTer4	p.S1419Kfs*4	ENST00000257430	NM_000038.5	1418	ata/atAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	246	556	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920469	134920469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	65	481	0	ENST00000398015.3:c.2284G>A	p.Asp762Asn	p.D762N	ENST00000398015	NM_004441.4	762	Gac/Aac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593532	48593532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	28	170	0	ENST00000342988.3:c.1283A>T	p.Lys428Met	p.K428M	ENST00000342988	NM_005359.5	428	aAg/aTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361108	66361108	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0037084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	35	264	0	ENST00000273854.3:c.1064C>A	p.Thr355Lys	p.T355K	ENST00000273854	NM_004439.5	355	aCa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	278	522	1	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0037486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	219	300	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800921	18800921	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201612275		P-0037486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	193	356	1	ENST00000266497.5:c.4297G>A	p.Asp1433Asn	p.D1433N	ENST00000266497		1433	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	84	825	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79966025	79966025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	40	497	0	ENST00000265081.6:c.689C>T	p.Thr230Met	p.T230M	ENST00000265081	NM_002439.4	230	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	355	541	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0037673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	130	235	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844776	156844776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	232	466	0	ENST00000524377.1:c.1330C>T	p.Arg444Trp	p.R444W	ENST00000524377	NM_002529.3	444	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0037673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	218	308	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
TAP1	6890	MSKCC	GRCh37	6	32813553	32813553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	19	270	0	ENST00000354258.4:c.2230C>T	p.Leu744Phe	p.L744F	ENST00000354258	NM_000593.5	744	Ctc/Ttc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044988	47044988	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	316	292	0	ENST00000329236.7:c.2080G>T	p.Glu694Ter	p.E694*	ENST00000329236	NM_001204466.1	694	Gag/Tag																																																																														
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			624	182	965	3	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	174	855	2	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	170	384	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	185	807	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	236	322	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478786	56478786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	163	514	0	ENST00000267101.3:c.242G>A	p.Arg81Gln	p.R81Q	ENST00000267101	NM_001982.3	81	cGa/cAa																																																																														
MYC	4609	MSKCC	GRCh37	8	128750762	128750764	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-	rs1274246760		P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	132	628	0	ENST00000377970.2:c.301_303del	p.Asn101del	p.N101del	ENST00000377970	NM_002467.4	100	gACAac/gac																																																																														
TERT	7015	MSKCC	GRCh37	5	1279443	1279443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	221	1086	1	ENST00000310581.5:c.2093G>A	p.Arg698Gln	p.R698Q	ENST00000310581	NM_198253.2	698	cGg/cAg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	249	715	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
SYK	6850	MSKCC	GRCh37	9	93606304	93606304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			555	219	907	1	ENST00000375746.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000375746	NM_001174167.1	42	Cgc/Tgc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445005	89445005	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112239794		P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	102	421	0	ENST00000336596.2:c.1325C>T	p.Thr442Met	p.T442M	ENST00000336596	NM_005233.5	442	aCg/aTg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	118	329	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																														
SRC	6714	MSKCC	GRCh37	20	36012726	36012726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	73	128	1	ENST00000358208.4:c.170C>T	p.Ala57Val	p.A57V	ENST00000358208		57	gCg/gTg																																																																														
BLM	641	MSKCC	GRCh37	15	91358367	91358367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	143	543	1	ENST00000355112.3:c.4112C>T	p.Thr1371Met	p.T1371M	ENST00000355112	NM_000057.2	1371	aCg/aTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81339535	81339535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	124	466	0	ENST00000222390.5:c.1469C>T	p.Thr490Met	p.T490M	ENST00000222390	NM_000601.4	490	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101278	27101278	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	169	768	0	ENST00000324856.7:c.4563del	p.Ala1522ProfsTer5	p.A1522Pfs*5	ENST00000324856	NM_006015.4	1520	ggC/gg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	201	570	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	209	1051	4	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	204	638	2	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910819	114910819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	236	604	2	ENST00000543371.1:c.938C>T	p.Ala313Val	p.A313V	ENST00000543371	NM_001198531.1	313	gCc/gTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	139	418	2	ENST00000262189.6:c.8389_8390del	p.Lys2797GlyfsTer11	p.K2797Gfs*11	ENST00000262189	NM_170606.2	2797	AAg/g																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152007140	152007140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	138	403	1	ENST00000262189.6:c.760C>T	p.Arg254Cys	p.R254C	ENST00000262189	NM_170606.2	254	Cgt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299097	15299097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			518	163	819	4	ENST00000263388.2:c.1441G>A	p.Gly481Ser	p.G481S	ENST00000263388	NM_000435.2	481	Ggt/Agt																																																																														
AXL	558	MSKCC	GRCh37	19	41744410	41744410	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148886744		P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	192	911	0	ENST00000301178.4:c.1030C>T	p.Arg344Trp	p.R344W	ENST00000301178	NM_021913.4	344	Cgg/Tgg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631153	176631153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	162	468	1	ENST00000439151.2:c.1096G>A	p.Val366Met	p.V366M	ENST00000439151	NM_022455.4	366	Gtg/Atg																																																																														
RFWD2	0	MSKCC	GRCh37	1	175956113	175956113	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	143	438	0	ENST00000367669.3:c.2099T>A	p.Val700Asp	p.V700D	ENST00000367669	NM_022457.5	700	gTt/gAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499743	18499745	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	102	343	0	ENST00000266497.5:c.1601_1603del	p.Asn534del	p.N534del	ENST00000266497		533	cACAac/cac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427275	49427275	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	182	672	0	ENST00000301067.7:c.11213A>G	p.Gln3738Arg	p.Q3738R	ENST00000301067	NM_003482.3	3738	cAg/cGg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557551	21557551	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	186	656	0	ENST00000382592.4:c.2294A>C	p.Glu765Ala	p.E765A	ENST00000382592	NM_014572.2	765	gAg/gCg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467788	99467788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	118	334	0	ENST00000268035.6:c.2657G>T	p.Arg886Met	p.R886M	ENST00000268035	NM_000875.3	886	aGg/aTg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396308	396308	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	213	885	0	ENST00000262320.3:c.718A>C	p.Thr240Pro	p.T240P	ENST00000262320	NM_003502.3	240	Acc/Ccc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857587	9857587	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	98	438	0	ENST00000330684.3:c.3814G>C	p.Ala1272Pro	p.A1272P	ENST00000330684	NM_001134407.1	1272	Gca/Cca																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7989463	7989463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	179	799	2	ENST00000319144.4:c.223G>A	p.Ala75Thr	p.A75T	ENST00000319144	NM_001139.2	75	Gcc/Acc																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428336	33428336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	158	671	0	ENST00000335858.7:c.451G>A	p.Ala151Thr	p.A151T	ENST00000335858	NM_133629.2	151	Gcc/Acc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369187	40369187	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	158	512	0	ENST00000293328.3:c.1371del	p.Gln458LysfsTer11	p.Q458Kfs*11	ENST00000293328	NM_012448.3	457	ttT/tt																																																																														
CARM1	10498	MSKCC	GRCh37	19	11031541	11031541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	227	1041	0	ENST00000327064.4:c.1456G>T	p.Gly486Cys	p.G486C	ENST00000327064	NM_199141.1	486	Ggc/Tgc																																																																														
EP300	2033	MSKCC	GRCh37	22	41537046	41537047	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	70	207	0	ENST00000263253.7:c.1879-2dup		p.X627_splice	ENST00000263253	NM_001429.3	627																																																																															
MLH1	4292	MSKCC	GRCh37	3	37053576	37053576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	288	493	0	ENST00000231790.2:c.665del	p.Asn222MetfsTer7	p.N222Mfs*7	ENST00000231790	NM_000249.3	221	ggA/gg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164793	47164793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	107	342	0	ENST00000409792.3:c.1333C>T	p.Arg445Cys	p.R445C	ENST00000409792	NM_014159.6	445	Cgc/Tgc																																																																														
RHOA	387	MSKCC	GRCh37	3	49412896	49412896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	128	644	0	ENST00000418115.1:c.127G>A	p.Val43Met	p.V43M	ENST00000418115	NM_001664.2	43	Gtg/Atg																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665422	182665422	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	73	224	0	ENST00000292782.4:c.521-2A>C		p.X174_splice	ENST00000292782	NM_020640.2	174																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505033	186505033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	89	308	0	ENST00000323963.5:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000323963		297	Gac/Tac																																																																														
TET2	54790	MSKCC	GRCh37	4	106180861	106180861	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	118	340	0	ENST00000380013.4:c.3889G>T	p.Gly1297Ter	p.G1297*	ENST00000380013	NM_001127208.2	1297	Gga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541490	187541490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	108	342	0	ENST00000441802.2:c.6250C>A	p.Leu2084Ile	p.L2084I	ENST00000441802	NM_005245.3	2084	Ctt/Att																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911231	29911231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	45	385	0	ENST00000376809.5:c.530C>T	p.Ala177Val	p.A177V	ENST00000376809	NM_002116.7	177	gCg/gTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671398	30671398	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	150	644	1	ENST00000376406.3:c.5562G>T	p.Glu1854Asp	p.E1854D	ENST00000376406	NM_014641.2	1854	gaG/gaT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508995	106508995	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	115	559	0	ENST00000359195.3:c.989del	p.Thr330ArgfsTer54	p.T330Rfs*54	ENST00000359195	NM_002649.2	330	aCg/ag																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020744	37020744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	144	616	0	ENST00000358127.4:c.101C>T	p.Pro34Leu	p.P34L	ENST00000358127	NM_001280556.1	34	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	190	647	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0038599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	120	224	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	156	416	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920419	114920419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	202	533	0	ENST00000543371.1:c.1360G>T	p.Asp454Tyr	p.D454Y	ENST00000543371	NM_001198531.1	454	Gac/Tac																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457408	67457408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	331	725	0	ENST00000327367.4:c.382C>T	p.Gln128Ter	p.Q128*	ENST00000327367	NM_005902.3	128	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	438	675	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	242	475	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131973851	131973851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	139	432	0	ENST00000265335.6:c.3554G>A	p.Arg1185Gln	p.R1185Q	ENST00000265335		1185	cGa/cAa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134423	41134423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148177044		P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	450	540	0	ENST00000379561.5:c.1205C>T	p.Thr402Met	p.T402M	ENST00000379561	NM_002015.3	402	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	495	545	0	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	607	484	0	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031691	69031691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	216	426	0	ENST00000288368.4:c.3446G>A	p.Arg1149His	p.R1149H	ENST00000288368	NM_024870.2	1149	cGc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76907618	76907618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	90	530	0	ENST00000373344.5:c.4543G>A	p.Glu1515Lys	p.E1515K	ENST00000373344	NM_000489.3	1515	Gaa/Aaa																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675073	40675073	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1350	266	739	0	ENST00000249776.8:c.37T>G	p.Phe13Val	p.F13V	ENST00000249776	NM_033286.3	13	Ttc/Gtc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0038903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	580	666	0	ENST00000407977.2:c.348_349dup	p.Arg117ProfsTer42	p.R117Pfs*42	ENST00000407977		117	cgc/cCCgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	38	377	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133220454	133220454	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41561818		P-0039259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	41	440	1	ENST00000320574.5:c.4259C>T	p.Ala1420Val	p.A1420V	ENST00000320574	NM_006231.2	1420	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	11	193	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0039259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	26	273	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	29	330	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	101	425	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	98	361	1	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	51	503	0	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																																																														
TET1	80312	MSKCC	GRCh37	10	70405220	70405220	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	47	345	0	ENST00000373644.4:c.2734A>G	p.Lys912Glu	p.K912E	ENST00000373644	NM_030625.2	912	Aag/Gag																																																																														
MAX	4149	MSKCC	GRCh37	14	65560457	65560457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	37	323	0	ENST00000358664.4:c.140G>A	p.Arg47Gln	p.R47Q	ENST00000358664	NM_002382.4	47	cGg/cAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277992	41277992	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0039259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	27	282	0	ENST00000349496.5:c.1954+2T>C		p.X652_splice	ENST00000349496	NM_001904.3	652																																																																															
ATRX	546	MSKCC	GRCh37	X	76944414	76944414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	20	340	0	ENST00000373344.5:c.491G>A	p.Gly164Glu	p.G164E	ENST00000373344	NM_000489.3	164	gGg/gAg																																																																														
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	254	342	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	453	500	0	ENST00000269305.4:c.993+1G>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397640	139397640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	553	565	0	ENST00000277541.6:c.5161G>A	p.Val1721Met	p.V1721M	ENST00000277541	NM_017617.3	1721	Gtg/Atg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59820468	59820468	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200960251		P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	241	399	0	ENST00000259008.2:c.2285G>A	p.Arg762His	p.R762H	ENST00000259008	NM_032043.2	762	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108236074	108236074	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	176	461	0	ENST00000278616.4:c.9012del	p.Val3005Ter	p.V3005*	ENST00000278616	NM_000051.3	3004	Aaa/aa																																																																														
CBL	867	MSKCC	GRCh37	11	119156038	119156038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	293	603	0	ENST00000264033.4:c.1703C>T	p.Thr568Ile	p.T568I	ENST00000264033	NM_005188.3	568	aCa/aTa																																																																														
PAK7	0	MSKCC	GRCh37	20	9624959	9624959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	128	236	0	ENST00000353224.5:c.18G>T	p.Lys6Asn	p.K6N	ENST00000353224	NM_177990.2	6	aaG/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112175745	112175751	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATAC	CTGATAC	-			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	91	301	0	ENST00000257430.4:c.4454_4460del	p.Ala1485ValfsTer20	p.A1485Vfs*20	ENST00000257430	NM_000038.5	1485	gCTGATACt/gt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638368	117638368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	151	397	0	ENST00000368508.3:c.6073A>G	p.Ile2025Val	p.I2025V	ENST00000368508	NM_002944.2	2025	Atc/Gtc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317435	1317435	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0039323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	254	483	0				ENST00000381566																																																																																	
TNFRSF14	8764	MSKCC	GRCh37	1	2491363	2491363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	58	879	0	ENST00000355716.4:c.406G>A	p.Ala136Thr	p.A136T	ENST00000355716	NM_003820.2	136	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	39	118	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	29	293	2	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																														
CDC73	79577	MSKCC	GRCh37	1	193099332	193099332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	20	348	0	ENST00000367435.3:c.266C>A	p.Pro89His	p.P89H	ENST00000367435	NM_024529.4	89	cCt/cAt																																																																														
PARP1	142	MSKCC	GRCh37	1	226568838	226568838	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	69	774	1	ENST00000366794.5:c.1231A>G	p.Met411Val	p.M411V	ENST00000366794	NM_001618.3	411	Atg/Gtg																																																																														
RET	5979	MSKCC	GRCh37	10	43597940	43597940	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149403911		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	88	1000	3	ENST00000355710.3:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000355710	NM_020975.4	163	cGg/cAg																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724511	112724511	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	27	555	1	ENST00000369452.4:c.395G>C	p.Ser132Thr	p.S132T	ENST00000369452	NM_007373.3	132	aGt/aCt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	66	474	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138920	64138920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	86	693	1	ENST00000334205.4:c.2287C>T	p.Arg763Cys	p.R763C	ENST00000334205	NM_003942.2	763	Cgc/Tgc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625143	69625143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	44	859	4	ENST00000334134.2:c.650C>T	p.Pro217Leu	p.P217L	ENST00000334134	NM_005247.2	217	cCg/cTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948483	71948484	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	70	1006	1	ENST00000298229.2:c.3201dup	p.Ser1068GlnfsTer17	p.S1068Qfs*17	ENST00000298229	NM_001567.3	1065	-/C																																																																														
EED	8726	MSKCC	GRCh37	11	85967540	85967540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	18	351	0	ENST00000263360.6:c.538A>G	p.Met180Val	p.M180V	ENST00000263360	NM_003797.3	180	Atg/Gtg																																																																														
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	32	537	2	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																														
ATM	472	MSKCC	GRCh37	11	108201067	108201067	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	19	360	0	ENST00000278616.4:c.7434A>C	p.Glu2478Asp	p.E2478D	ENST00000278616	NM_000051.3	2478	gaA/gaC																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352745	118352747	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	23	487	0	ENST00000534358.1:c.3953_3955del	p.Glu1318del	p.E1318del	ENST00000534358	NM_005933.3	1317	aAAGaa/aaa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497611	125497611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	14	326	0	ENST00000428830.2:c.175A>G	p.Asn59Asp	p.N59D	ENST00000428830	NM_001114121.2	59	Aat/Gat																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	15	353	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	406360	406360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	18	547	2	ENST00000399788.2:c.4081G>A	p.Ala1361Thr	p.A1361T	ENST00000399788	NM_001042603.1	1361	Gcc/Acc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	10	298	1	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245000	46245000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	49	669	1	ENST00000334344.6:c.3094C>T	p.Gln1032Ter	p.Q1032*	ENST00000334344	NM_152641.2	1032	Cag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	16	324	0	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50482355	50482355	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	95	564	1	ENST00000394963.4:c.711del	p.Phe237LeufsTer5	p.F237Lfs*5	ENST00000394963	NM_003076.4	236	Ttt/tt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856373	111856373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	61	213	0	ENST00000341259.2:c.424C>A	p.Leu142Ile	p.L142I	ENST00000341259	NM_005475.2	142	Ctc/Atc																																																																														
POLE	5426	MSKCC	GRCh37	12	133241002	133241002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	79	656	1	ENST00000320574.5:c.2515G>A	p.Gly839Arg	p.G839R	ENST00000320574	NM_006231.2	839	Ggg/Agg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563047	21563047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	132	909	1	ENST00000382592.4:c.872C>T	p.Thr291Met	p.T291M	ENST00000382592	NM_014572.2	291	aCg/aTg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975441	26975441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	45	505	0	ENST00000381527.3:c.1067G>A	p.Arg356Gln	p.R356Q	ENST00000381527	NM_001260.1	356	cGa/cAa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582875	95582875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	12	345	0	ENST00000343455.3:c.1667C>A	p.Pro556His	p.P556H	ENST00000343455	NM_177438.2	556	cCc/cAc																																																																														
CD276	80381	MSKCC	GRCh37	15	73995370	73995370	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199765601		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	25	422	0	ENST00000318443.5:c.676G>A	p.Val226Met	p.V226M	ENST00000318443	NM_001024736.1	226	Gtg/Atg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478221	99478221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	23	377	0	ENST00000268035.6:c.3125G>A	p.Arg1042His	p.R1042H	ENST00000268035	NM_000875.3	1042	cGt/cAt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2224321	2224321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	144	819	0	ENST00000326181.6:c.1333C>T	p.Leu445Phe	p.L445F	ENST00000326181	NM_032271.2	445	Ctc/Ttc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226049	2226049	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	50	850	0	ENST00000326181.6:c.1747-1G>T		p.X583_splice	ENST00000326181	NM_032271.2	583																																																																															
SLX4	84464	MSKCC	GRCh37	16	3646297	3646297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	79	921	0	ENST00000294008.3:c.1781G>A	p.Gly594Asp	p.G594D	ENST00000294008	NM_032444.2	594	gGc/gAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781901	3781903	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs751071525		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	23	697	0	ENST00000262367.5:c.4764_4766del	p.Lys1588del	p.K1588del	ENST00000262367	NM_004380.2	1588	aaGAAc/aac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817766	3817766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	104	577	1	ENST00000262367.5:c.3205G>A	p.Gly1069Ser	p.G1069S	ENST00000262367	NM_004380.2	1069	Ggc/Agc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	37	627	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923836	72923836	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	24	555	0	ENST00000268489.5:c.3242T>C	p.Val1081Ala	p.V1081A	ENST00000268489	NM_006885.3	1081	gTa/gCa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991703	72991703	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201821212		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	23	459	3	ENST00000268489.5:c.2342C>T	p.Ala781Val	p.A781V	ENST00000268489	NM_006885.3	781	gCg/gTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	75	749	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	95	635	3	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40865349	40865349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	166	737	0	ENST00000428826.2:c.1082G>A	p.Arg361His	p.R361H	ENST00000428826		361	cGc/cAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532644	63532644	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	73	860	0	ENST00000307078.5:c.1935del	p.Leu646TrpfsTer43	p.L646Wfs*43	ENST00000307078	NM_004655.3	645	ccC/cc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554038	63554038	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	134	574	1	ENST00000307078.5:c.701G>A	p.Trp234Ter	p.W234*	ENST00000307078	NM_004655.3	234	tGg/tAg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78933974	78933974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	111	857	0	ENST00000306801.3:c.3574G>A	p.Val1192Ile	p.V1192I	ENST00000306801	NM_020761.2	1192	Gtc/Atc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395793	45395793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	39	298	0	ENST00000262160.6:c.341G>A	p.Arg114His	p.R114H	ENST00000262160	NM_005901.5	114	cGt/cAt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231449	5231449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	114	762	1	ENST00000357368.4:c.2027del	p.Pro676ArgfsTer134	p.P676Rfs*134	ENST00000357368	NM_002850.3	676	cCg/cg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291507	15291507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	59	698	2	ENST00000263388.2:c.3127G>A	p.Ala1043Thr	p.A1043T	ENST00000263388	NM_000435.2	1043	Gcc/Acc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303055	15303055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	35	1020	1	ENST00000263388.2:c.395C>T	p.Ala132Val	p.A132V	ENST00000263388	NM_000435.2	132	gCc/gTc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19261529	19261529	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	44	674	2	ENST00000162023.5:c.16del	p.Ile6SerfsTer14	p.I6Sfs*14	ENST00000162023		6	Atc/tc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36209221	36209221	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	14	343	0	ENST00000222270.7:c.301T>C	p.Trp101Arg	p.W101R	ENST00000222270	NM_014727.1	101	Tgg/Cgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	50	1003	6	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	58	1036	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224699	36224699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	70	1017	1	ENST00000222270.7:c.7085C>T	p.Pro2362Leu	p.P2362L	ENST00000222270	NM_014727.1	2362	cCg/cTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796784	42796784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	98	908	0	ENST00000575354.2:c.3242C>A	p.Pro1081Gln	p.P1081Q	ENST00000575354	NM_015125.3	1081	cCg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50916702	50916702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	89	672	0	ENST00000440232.2:c.2174G>A	p.Arg725His	p.R725H	ENST00000440232	NM_002691.3	725	cGt/cAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52729053	52729053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	42	558	0	ENST00000322088.6:c.1745C>A	p.Ala582Asp	p.A582D	ENST00000322088	NM_014225.5	582	gCt/gAt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085971	16085971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	25	605	0	ENST00000281043.3:c.1147C>T	p.Arg383Cys	p.R383C	ENST00000281043	NM_005378.4	383	Cgc/Tgc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25964953	25964953	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	38	460	0	ENST00000435504.4:c.4253A>G	p.His1418Arg	p.H1418R	ENST00000435504		1418	cAt/cGt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	14	448	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																														
REL	5966	MSKCC	GRCh37	2	61145358	61145358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	20	381	2	ENST00000295025.8:c.568C>T	p.Arg190Cys	p.R190C	ENST00000295025	NM_002908.2	190	Cgt/Tgt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225339003	225339003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	18	430	0	ENST00000264414.4:c.2266C>T	p.Arg756Ter	p.R756*	ENST00000264414	NM_003590.4	756	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41574502	41574502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	60	779	0	ENST00000263253.7:c.6787C>T	p.Arg2263Ter	p.R2263*	ENST00000263253	NM_001429.3	2263	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	112	309	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73047264	73047264	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	32	451	0	ENST00000356692.5:c.71T>G	p.Val24Gly	p.V24G	ENST00000356692		24	gTc/gGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	30	367	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	11	352	1	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540251	187540251	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	37	489	0	ENST00000441802.2:c.7489T>C	p.Tyr2497His	p.Y2497H	ENST00000441802	NM_005245.3	2497	Tat/Cat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31504699	31504699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	34	650	0	ENST00000344624.3:c.1631G>A	p.Arg544His	p.R544H	ENST00000344624		544	cGc/cAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	36	342	0	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675570	86675571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	16	282	0	ENST00000274376.6:c.2513dup	p.Asn838LysfsTer2	p.N838Kfs*2	ENST00000274376	NM_002890.2	836	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112178879	112178879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	13	359	0	ENST00000257430.4:c.7588C>T	p.Arg2530Trp	p.R2530W	ENST00000257430	NM_000038.5	2530	Cgg/Tgg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524364	176524364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	32	987	0	ENST00000292408.4:c.2225C>T	p.Ala742Val	p.A742V	ENST00000292408	NM_213647.1	742	gCg/gTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046050	180046050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	49	419	1	ENST00000261937.6:c.2821G>A	p.Ala941Thr	p.A941T	ENST00000261937	NM_182925.4	941	Gcc/Acc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402683	20402683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	59	637	0	ENST00000346618.3:c.220C>A	p.Leu74Ile	p.L74I	ENST00000346618	NM_001949.4	74	Ctc/Atc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912333	29912334	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	60	789	0	ENST00000376809.5:c.954dup	p.Gly319TrpfsTer21	p.G319Wfs*21	ENST00000376809	NM_002116.7	318	ctt/cTtt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675438	30675438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	77	652	5	ENST00000376406.3:c.2918C>T	p.Ala973Val	p.A973V	ENST00000376406	NM_014641.2	973	gCg/gTg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32813522	32813522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	80	574	1	ENST00000354258.4:c.2261G>A	p.Arg754His	p.R754H	ENST00000354258	NM_000593.5	754	cGc/cAc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004926	150004926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	25	413	0	ENST00000253339.5:c.1299G>A	p.Trp433Ter	p.W433*	ENST00000253339		433	tgG/tgA																																																																														
PARK2	0	MSKCC	GRCh37	6	161969983	161969983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	57	647	0	ENST00000366898.1:c.986del	p.Gly329AlafsTer106	p.G329Afs*106	ENST00000366898	NM_004562.2	329	gGc/gc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	13	630	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38134008	38134008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	43	439	1	ENST00000317025.8:c.3878C>T	p.Ala1293Val	p.A1293V	ENST00000317025	NM_023034.1	1293	gCg/gTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	61	765	1	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521528	8521528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	69	544	0	ENST00000356435.5:c.710G>T	p.Arg237Ile	p.R237I	ENST00000356435		237	aGa/aTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636766	8636766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	70	538	0	ENST00000356435.5:c.143C>T	p.Thr48Met	p.T48M	ENST00000356435		48	aCg/aTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	67	702	3	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	67	973	3	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	23	962	2	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981863	201981863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	103	879	0	ENST00000359651.3:c.574G>A	p.Gly192Ser	p.G192S	ENST00000359651		192	Ggc/Agc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	22	180	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11227537	11227537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	117	337	0	ENST00000361445.4:c.4291G>A	p.Gly1431Arg	p.G1431R	ENST00000361445	NM_004958.3	1431	Gga/Aga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106488	27106488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	148	439	0	ENST00000324856.7:c.6099G>T	p.Lys2033Asn	p.K2033N	ENST00000324856	NM_006015.4	2033	aaG/aaT																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	183	225	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466326	120466326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	119	344	0	ENST00000256646.2:c.4793C>T	p.Ala1598Val	p.A1598V	ENST00000256646	NM_024408.3	1598	gCt/gTt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844776	156844776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	152	450	0	ENST00000524377.1:c.1330C>T	p.Arg444Trp	p.R444W	ENST00000524377	NM_002529.3	444	Cgg/Tgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	59	191	0	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																														
TET1	80312	MSKCC	GRCh37	10	70446283	70446284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	140	385	0	ENST00000373644.4:c.5230dup	p.Arg1744LysfsTer26	p.R1744Kfs*26	ENST00000373644	NM_030625.2	1741	-/A																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913294		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	97	259	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717778	89717778	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	72	185	0	ENST00000371953.3:c.801+2T>G		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
WT1	7490	MSKCC	GRCh37	11	32417809	32417809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	96	262	0	ENST00000332351.3:c.1243C>T	p.His415Tyr	p.H415Y	ENST00000332351	NM_024426.4	415	Cac/Tac																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573764	64573764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	137	412	0	ENST00000337652.1:c.1004G>A	p.Arg335His	p.R335H	ENST00000337652	NM_130803.2	335	cGc/cAc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67197068	67197068	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	105	216	0	ENST00000312629.5:c.309+2T>C		p.X103_splice	ENST00000312629	NM_003952.2	103																																																																															
FGF4	2249	MSKCC	GRCh37	11	69589720	69589720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	27	68	2	ENST00000168712.1:c.133C>T	p.Arg45Cys	p.R45C	ENST00000168712	NM_002007.2	45	Cgc/Tgc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589848	69589848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	18	28	0	ENST00000168712.1:c.5C>T	p.Ser2Leu	p.S2L	ENST00000168712	NM_002007.2	2	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431308	49431308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	97	319	0	ENST00000301067.7:c.9831G>T	p.Gln3277His	p.Q3277H	ENST00000301067	NM_003482.3	3277	caG/caT																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856127	111856127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	114	243	0	ENST00000341259.2:c.178G>A	p.Ala60Thr	p.A60T	ENST00000341259	NM_005475.2	60	Gcc/Acc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112910829	112910829	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	120	247	0	ENST00000351677.2:c.842del	p.Asn281ThrfsTer58	p.N281Tfs*58	ENST00000351677	NM_002834.3	280	Aaa/aa																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	161	392	0	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																														
FLT3	2322	MSKCC	GRCh37	13	28674634	28674634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	15	22	0	ENST00000241453.7:c.14C>T	p.Ala5Val	p.A5V	ENST00000241453	NM_004119.2	5	gCg/gTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912361	32912361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	49	189	0	ENST00000380152.3:c.3869G>A	p.Cys1290Tyr	p.C1290Y	ENST00000380152		1290	tGc/tAc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609759	81609759	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	114	281	0	ENST00000298171.2:c.1357A>G	p.Met453Val	p.M453V	ENST00000298171	NM_000369.2	453	Atg/Gtg																																																																														
AKT1	207	MSKCC	GRCh37	14	105242076	105242076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	177	464	0	ENST00000349310.3:c.348G>T	p.Glu116Asp	p.E116D	ENST00000349310	NM_001014432.1	116	gaG/gaT																																																																														
RAD51	5888	MSKCC	GRCh37	15	41021799	41021799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	129	298	0	ENST00000267868.3:c.741G>C	p.Arg247Ser	p.R247S	ENST00000267868	NM_002875.4	247	agG/agC																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43720257	43720257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	121	359	0	ENST00000382044.4:c.3785T>C	p.Val1262Ala	p.V1262A	ENST00000382044	NM_001141980.1	1262	gTg/gCg																																																																														
B2M	567	MSKCC	GRCh37	15	45003773	45003773	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	221	326	0	ENST00000558401.1:c.29T>G	p.Leu10Arg	p.L10R	ENST00000558401	NM_004048.2	10	cTc/cGc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67459125	67459125	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	334	419	0	ENST00000327367.4:c.545del	p.Pro182LeufsTer4	p.P182Lfs*4	ENST00000327367	NM_005902.3	181	Ccc/cc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251016	99251016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	273	416	0	ENST00000268035.6:c.320G>A	p.Arg107His	p.R107H	ENST00000268035	NM_000875.3	107	cGc/cAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	147	478	0	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2111963	2111963	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	42	461	0	ENST00000219476.3:c.1211A>G	p.Gln404Arg	p.Q404R	ENST00000219476	NM_000548.3	404	cAg/cGg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	93	333	1	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644890	67644890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	109	346	0	ENST00000264010.4:c.155A>G	p.Gln52Arg	p.Q52R	ENST00000264010	NM_006565.3	52	cAg/cGg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821889	72821890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	66	219	0	ENST00000268489.5:c.10285dup	p.Arg3429ProfsTer2	p.R3429Pfs*2	ENST00000268489	NM_006885.3	3429	cgt/cCgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993845	72993845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	37	376	1	ENST00000268489.5:c.200C>T	p.Ser67Leu	p.S67L	ENST00000268489	NM_006885.3	67	tCg/tTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351197	89351197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	163	397	0	ENST00000301030.4:c.1753A>G	p.Ser585Gly	p.S585G	ENST00000301030	NM_001256183.1	585	Agt/Ggt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	176	460	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	97	179	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
RARA	5914	MSKCC	GRCh37	17	38504699	38504699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	155	387	0	ENST00000254066.5:c.310G>A	p.Ala104Thr	p.A104T	ENST00000254066	NM_000964.3	104	Gcc/Acc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40364169	40364169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	149	394	0	ENST00000293328.3:c.1513C>T	p.Pro505Ser	p.P505S	ENST00000293328	NM_012448.3	505	Cca/Tca																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40451808	40451808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	128	448	0	ENST00000345506.4:c.590G>A	p.Arg197His	p.R197H	ENST00000345506	NM_003152.3	197	cGt/cAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	303	412	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	127	318	1	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59820469	59820469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	82	225	1	ENST00000259008.2:c.2284C>T	p.Arg762Cys	p.R762C	ENST00000259008	NM_032043.2	762	Cgt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221222	1221222	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	89	498	0	ENST00000326873.7:c.745A>G	p.Thr249Ala	p.T249A	ENST00000326873	NM_000455.4	249	Acc/Gcc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350722	15350722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	198	475	1	ENST00000263377.2:c.3281A>G	p.Gln1094Arg	p.Q1094R	ENST00000263377	NM_058243.2	1094	cAg/cGg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946817	17946817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	172	487	0	ENST00000458235.1:c.1830G>A	p.Met610Ile	p.M610I	ENST00000458235	NM_000215.3	610	atG/atA																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257163	19257163	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	99	335	2	ENST00000162023.5:c.800del	p.Pro267LeufsTer?	p.P267Lfs*?	ENST00000162023		267	cCt/ct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	164	536	0	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220868	36220868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	15	149	0	ENST00000222270.7:c.4918C>T	p.Arg1640Cys	p.R1640C	ENST00000222270	NM_014727.1	1640	Cgc/Tgc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919786	50919786	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	131	400	0	ENST00000440232.2:c.2953+1G>A		p.X985_splice	ENST00000440232	NM_002691.3	985																																																																															
MSH6	2956	MSKCC	GRCh37	2	48010482	48010482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	84	229	0	ENST00000234420.5:c.114del	p.Ala40ProfsTer41	p.A40Pfs*41	ENST00000234420	NM_000179.2	37	gCc/gc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	120	309	7	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190742010	190742010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142159998		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	54	226	0	ENST00000441310.2:c.2647C>T	p.Arg883Cys	p.R883C	ENST00000441310	NM_000534.4	883	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426722	212426722	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	122	314	0	ENST00000342788.4:c.2393T>G	p.Leu798Arg	p.L798R	ENST00000342788	NM_005235.2	798	cTt/cGt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	120	410	1	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	166	545	0	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																														
MLH1	4292	MSKCC	GRCh37	3	37042545	37042545	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	73	190	1	ENST00000231790.2:c.306+1G>A		p.X102_splice	ENST00000231790	NM_000249.3	102																																																																															
MLH1	4292	MSKCC	GRCh37	3	37050349	37050349	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	90	237	0	ENST00000231790.2:c.503del	p.Asn168IlefsTer34	p.N168Ifs*34	ENST00000231790	NM_000249.3	166	ttA/tt																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181390	38181390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	48	270	0	ENST00000396334.3:c.403C>G	p.Gln135Glu	p.Q135E	ENST00000396334	NM_002468.4	135	Cag/Gag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158111	47158111	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	114	233	0	ENST00000409792.3:c.4586+2T>C		p.X1529_splice	ENST00000409792	NM_014159.6	1529																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52651313	52651313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	92	278	0	ENST00000394830.3:c.1783C>T	p.Arg595Trp	p.R595W	ENST00000394830	NM_018313.4	595	Cgg/Tgg																																																																														
BCL6	604	MSKCC	GRCh37	3	187447426	187447426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	129	426	1	ENST00000232014.4:c.767G>A	p.Ser256Asn	p.S256N	ENST00000232014	NM_001130845.1	256	aGc/aAc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980558	1980559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs752037034		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	123	446	9	ENST00000382891.5:c.4028dup	p.Glu1344ArgfsTer91	p.E1344Rfs*91	ENST00000382891	NM_133335.3	1340	-/C																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	72	160	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521346	187521346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	120	376	0	ENST00000441802.2:c.11809G>A	p.Ala3937Thr	p.A3937T	ENST00000441802	NM_005245.3	3937	Gcc/Acc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534269	187534269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	91	260	0	ENST00000441802.2:c.9457G>A	p.Asp3153Asn	p.D3153N	ENST00000441802	NM_005245.3	3153	Gac/Aac																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	258	321	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	19	121	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																														
APC	324	MSKCC	GRCh37	5	112176210	112176210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	102	278	0	ENST00000257430.4:c.4919G>A	p.Arg1640Gln	p.R1640Q	ENST00000257430	NM_000038.5	1640	cGg/cAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631305	117631305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	24	274	0	ENST00000368508.3:c.6373G>A	p.Val2125Ile	p.V2125I	ENST00000368508	NM_002944.2	2125	Gtt/Att																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	108	225	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146945	38146945	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	150	361	2	ENST00000317025.8:c.3197del	p.Asn1066ThrfsTer16	p.N1066Tfs*16	ENST00000317025	NM_023034.1	1066	aAc/ac																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	82	388	0	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129903	69129903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	98	253	1	ENST00000288368.4:c.4657G>A	p.Gly1553Arg	p.G1553R	ENST00000288368	NM_024870.2	1553	Gga/Aga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229625	98229625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	90	236	0	ENST00000331920.6:c.2333C>T	p.Thr778Met	p.T778M	ENST00000331920	NM_000264.3	778	aCg/aTg																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564755	139564755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	164	507	1	ENST00000308874.7:c.549del	p.Arg184GlyfsTer13	p.R184Gfs*13	ENST00000308874		182	Ccc/cc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918596	44918597	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	104	146	0	ENST00000377967.4:c.1083_1084del	p.Tyr362Ter	p.Y362*	ENST00000377967	NM_021140.2	360	aCT/a																																																																														
AR	367	MSKCC	GRCh37	X	66937449	66937449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	141	199	0	ENST00000374690.3:c.2303A>G	p.Asp768Gly	p.D768G	ENST00000374690	NM_000044.3	768	gAt/gGt																																																																														
MED12	9968	MSKCC	GRCh37	X	70354588	70354588	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	145	162	0	ENST00000374080.3:c.4753A>G	p.Met1585Val	p.M1585V	ENST00000374080		1585	Atg/Gtg																																																																														
RARA	5914	MSKCC	GRCh37	17	38512376	38512377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	69	443	0	ENST00000254066.5:c.1293dup	p.Arg432AlafsTer14	p.R432Afs*14	ENST00000254066	NM_000964.3	429	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	149	571	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	212	528	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	89	438	0	ENST00000342988.3:c.988G>C	p.Glu330Gln	p.E330Q	ENST00000342988	NM_005359.5	330	Gaa/Caa																																																																														
BTK	695	MSKCC	GRCh37	X	100611132	100611132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	147	593	0	ENST00000308731.7:c.1474C>T	p.Arg492Cys	p.R492C	ENST00000308731	NM_000061.2	492	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112174878	112174878	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	69	264	0	ENST00000257430.4:c.3587C>A	p.Ser1196Ter	p.S1196*	ENST00000257430	NM_000038.5	1196	tCa/tAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237614	16237614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	96	375	1	ENST00000375759.3:c.1061G>A	p.Gly354Asp	p.G354D	ENST00000375759	NM_015001.2	354	gGc/gAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793418	18793418	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	109	395	0	ENST00000266497.5:c.4115A>G	p.Tyr1372Cys	p.Y1372C	ENST00000266497		1372	tAt/tGt																																																																														
RHOA	387	MSKCC	GRCh37	3	49412907	49412907	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	138	625	0	ENST00000418115.1:c.116T>C	p.Phe39Ser	p.F39S	ENST00000418115	NM_001664.2	39	tTt/tCt																																																																														
APC	324	MSKCC	GRCh37	5	112116595	112116595	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	63	344	0	ENST00000257430.4:c.640del	p.Ala214HisfsTer5	p.A214Hfs*5	ENST00000257430	NM_000038.5	214	Gca/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	303	570	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	63	168	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250823	153250823	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0040654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	93	216	1	ENST00000281708.4:c.1236+1G>A		p.X412_splice	ENST00000281708	NM_033632.3	412																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36939165	36939165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	215	592	0	ENST00000361632.4:c.544G>A	p.Gly182Arg	p.G182R	ENST00000361632		182	Ggg/Agg																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551943	150551943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	78	323	0	ENST00000369026.2:c.64G>A	p.Gly22Arg	p.G22R	ENST00000369026	NM_021960.4	22	Ggg/Agg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193104712	193104712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	91	290	0	ENST00000367435.3:c.416G>A	p.Arg139Gln	p.R139Q	ENST00000367435	NM_024529.4	139	cGa/cAa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	71	280	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793710	89793710	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	142	404	0	ENST00000336032.3:c.779A>C	p.Lys260Thr	p.K260T	ENST00000336032	NM_006813.2	260	aAa/aCa																																																																														
MET	4233	MSKCC	GRCh37	7	116339746	116339746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	125	389	0	ENST00000397752.3:c.608C>A	p.Ser203Tyr	p.S203Y	ENST00000397752	NM_000245.2	203	tCt/tAt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416138	416138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	114	362	0	ENST00000399788.2:c.4048C>T	p.Arg1350Ter	p.R1350*	ENST00000399788	NM_001042603.1	1350	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	85	345	0	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61724120	61724120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	96	304	0	ENST00000401558.2:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000401558	NM_003400.3	261	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112174802	112174802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201830995		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	72	269	0	ENST00000257430.4:c.3511C>T	p.Arg1171Cys	p.R1171C	ENST00000257430	NM_000038.5	1171	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	368	610	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
KIT	3815	MSKCC	GRCh37	4	55597561	55597561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	113	446	1	ENST00000288135.5:c.2209G>A	p.Asp737Asn	p.D737N	ENST00000288135	NM_000222.2	737	Gac/Aac																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	22	337	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175060	112175060	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	52	219	0	ENST00000257430.4:c.3769G>T	p.Glu1257Ter	p.E1257*	ENST00000257430	NM_000038.5	1257	Gaa/Taa																																																																														
TP63	8626	MSKCC	GRCh37	3	189586502	189586502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	28	339	0	ENST00000264731.3:c.1126C>T	p.Arg376Cys	p.R376C	ENST00000264731	NM_003722.4	376	Cgc/Tgc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426812	121426812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	166	592	0	ENST00000257555.6:c.503G>A	p.Arg168His	p.R168H	ENST00000257555		168	cGc/cAc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	37	477	0	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576407	67576407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	40	301	0	ENST00000274335.5:c.686C>T	p.Ser229Leu	p.S229L	ENST00000274335		229	tCg/tTg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149457763	149457763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	101	634	0	ENST00000286301.3:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000286301	NM_005211.3	214	cGg/cAg																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228613019	228613019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	100	419	2	ENST00000366696.1:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000366696	NM_003493.2	3	cGa/cAa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	122	317	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672462	30672462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148215318		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	246	742	2	ENST00000376406.3:c.4498G>A	p.Ala1500Thr	p.A1500T	ENST00000376406	NM_014641.2	1500	Gcc/Acc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38953624	38953624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199645898		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	33	229	0	ENST00000357387.3:c.2729G>A	p.Arg910His	p.R910H	ENST00000357387	NM_152756.3	910	cGt/cAt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163542	32163542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	120	665	0	ENST00000375023.3:c.5684C>T	p.Ser1895Phe	p.S1895F	ENST00000375023	NM_004557.3	1895	tCt/tTt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349799	89349799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	293	801	0	ENST00000301030.4:c.3151G>T	p.Glu1051Ter	p.E1051*	ENST00000301030	NM_001256183.1	1051	Gaa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	187	724	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944562	40944562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	41	462	0	ENST00000373198.4:c.1940C>T	p.Ser647Leu	p.S647L	ENST00000373198	NM_133170.3	647	tCg/tTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	89	283	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	57	194	1	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456431	99456431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	146	521	0	ENST00000268035.6:c.1748C>T	p.Ala583Val	p.A583V	ENST00000268035	NM_000875.3	583	gCt/gTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534356	187534356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	60	696	3	ENST00000441802.2:c.9370G>A	p.Glu3124Lys	p.E3124K	ENST00000441802	NM_005245.3	3124	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539690	187539690	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	127	460	0	ENST00000441802.2:c.8050G>T	p.Glu2684Ter	p.E2684*	ENST00000441802	NM_005245.3	2684	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108119819	108119819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	44	245	0	ENST00000278616.4:c.1225C>T	p.Leu409Phe	p.L409F	ENST00000278616	NM_000051.3	409	Ctt/Ttt																																																																														
MET	4233	MSKCC	GRCh37	7	116339799	116339799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	129	462	0	ENST00000397752.3:c.661G>A	p.Glu221Lys	p.E221K	ENST00000397752	NM_000245.2	221	Gaa/Aaa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027958	48027958	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	107	341	0	ENST00000234420.5:c.2836G>T	p.Glu946Ter	p.E946*	ENST00000234420	NM_000179.2	946	Gaa/Taa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125503099	125503099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140276570		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	123	332	0	ENST00000428830.2:c.466C>T	p.Arg156Trp	p.R156W	ENST00000428830	NM_001114121.2	156	Cgg/Tgg																																																																														
SMO	6608	MSKCC	GRCh37	7	128845518	128845518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	81	731	0	ENST00000249373.3:c.815C>T	p.Ala272Val	p.A272V	ENST00000249373	NM_005631.4	272	gCg/gTg																																																																														
STK40	83931	MSKCC	GRCh37	1	36809476	36809476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	88	783	0	ENST00000373129.3:c.989C>T	p.Ala330Val	p.A330V	ENST00000373129	NM_032017.1	330	gCc/gTc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47684730	47684730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	93	381	0	ENST00000347630.2:c.719G>A	p.Arg240Gln	p.R240Q	ENST00000347630	NM_001007230.1	240	cGa/cAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008324	29008324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	68	288	0	ENST00000282397.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000282397	NM_002019.4	183	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817871	3817871	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	158	469	0	ENST00000262367.5:c.3100G>T	p.Glu1034Ter	p.E1034*	ENST00000262367	NM_004380.2	1034	Gaa/Taa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50784011	50784011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	201	634	0	ENST00000398568.2:c.402G>T	p.Gln134His	p.Q134H	ENST00000398568	NM_001042412.1	134	caG/caT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712823	43712823	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28903077		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	247	842	2	ENST00000382044.4:c.4361G>A	p.Arg1454Gln	p.R1454Q	ENST00000382044	NM_001141980.1	1454	cGa/cAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931826	68931826	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	52	597	0	ENST00000288368.4:c.256G>T	p.Glu86Ter	p.E86*	ENST00000288368	NM_024870.2	86	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884466	151884466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	116	333	0	ENST00000262189.6:c.4889C>T	p.Ser1630Leu	p.S1630L	ENST00000262189	NM_170606.2	1630	tCg/tTg																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793198	33793198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	27	126	1	ENST00000498907.2:c.123G>T	p.Gln41His	p.Q41H	ENST00000498907	NM_004364.3	41	caG/caT																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783338	9783338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	141	573	0	ENST00000377346.4:c.2582C>T	p.Ser861Phe	p.S861F	ENST00000377346	NM_005026.3	861	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29556080	29556080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	80	260	0	ENST00000358273.4:c.2447G>A	p.Arg816Gln	p.R816Q	ENST00000358273	NM_001042492.2	816	cGa/cAa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945780	17945780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	81	861	1	ENST00000458235.1:c.2080G>A	p.Glu694Lys	p.E694K	ENST00000458235	NM_000215.3	694	Gag/Aag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696399	47696399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	162	577	0	ENST00000347630.2:c.424C>A	p.Leu142Ile	p.L142I	ENST00000347630	NM_001007230.1	142	Ctt/Att																																																																														
NUF2	83540	MSKCC	GRCh37	1	163297332	163297332	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	111	391	0	ENST00000271452.3:c.178C>T	p.Arg60Ter	p.R60*	ENST00000271452	NM_145697.2	60	Cga/Tga																																																																														
DDR2	4921	MSKCC	GRCh37	1	162750028	162750028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	107	341	0	ENST00000367921.3:c.2560G>A	p.Asp854Asn	p.D854N	ENST00000367921	NM_006182.2	854	Gac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112178969	112178969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	82	300	0	ENST00000257430.4:c.7678C>T	p.Arg2560Ter	p.R2560*	ENST00000257430	NM_000038.5	2560	Cga/Tga																																																																														
HGF	3082	MSKCC	GRCh37	7	81359017	81359017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	44	492	0	ENST00000222390.5:c.944G>A	p.Gly315Asp	p.G315D	ENST00000222390	NM_000601.4	315	gGc/gAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117351	115117351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	33	318	0	ENST00000257566.3:c.823G>A	p.Glu275Lys	p.E275K	ENST00000257566	NM_016569.3	275	Gaa/Aaa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902622	1902622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	92	769	1	ENST00000382891.5:c.241G>T	p.Asp81Tyr	p.D81Y	ENST00000382891	NM_133335.3	81	Gat/Tat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858351	9858351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	43	403	0	ENST00000330684.3:c.3050C>T	p.Ser1017Phe	p.S1017F	ENST00000330684	NM_001134407.1	1017	tCc/tTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81350164	81350164	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	30	255	0	ENST00000222390.5:c.1169-1G>T		p.X390_splice	ENST00000222390	NM_000601.4	390																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733524	85733524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	161	436	1	ENST00000370580.1:c.488C>T	p.Thr163Met	p.T163M	ENST00000370580	NM_003921.4	163	aCg/aTg																																																																														
CBL	867	MSKCC	GRCh37	11	119103322	119103322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	150	511	0	ENST00000264033.4:c.360G>T	p.Glu120Asp	p.E120D	ENST00000264033	NM_005188.3	120	gaG/gaT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911517	39911517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	58	310	1	ENST00000378444.4:c.5113C>A	p.Leu1705Ile	p.L1705I	ENST00000378444	NM_001123385.1	1705	Ctc/Atc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965800	18965800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	53	807	0	ENST00000262803.5:c.1378C>T	p.Pro460Ser	p.P460S	ENST00000262803	NM_002911.3	460	Ccc/Tcc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240738	53240738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	235	350	0	ENST00000375401.3:c.1342G>T	p.Glu448Ter	p.E448*	ENST00000375401	NM_004187.3	448	Gaa/Taa																																																																														
BTK	695	MSKCC	GRCh37	X	100630190	100630190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	163	285	0	ENST00000308731.7:c.83G>A	p.Arg28His	p.R28H	ENST00000308731	NM_000061.2	28	cGc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912733	32912733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	50	447	0	ENST00000380152.3:c.4241C>T	p.Thr1414Met	p.T1414M	ENST00000380152		1414	aCg/aTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271691	15271691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	72	1001	0	ENST00000263388.2:c.6748G>A	p.Glu2250Lys	p.E2250K	ENST00000263388	NM_000435.2	2250	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112174590	112174590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	113	421	1	ENST00000257430.4:c.3299C>T	p.Ser1100Phe	p.S1100F	ENST00000257430	NM_000038.5	1100	tCt/tTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9523280	9523280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	180	590	1	ENST00000353224.5:c.1957C>T	p.Arg653Trp	p.R653W	ENST00000353224	NM_177990.2	653	Cgg/Tgg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256431	46256431	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs72645252		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	35	475	1	ENST00000371998.3:c.659G>T	p.Arg220Ile	p.R220I	ENST00000371998		220	aGa/aTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129839	55129839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	97	429	0	ENST00000257290.5:c.373G>T	p.Asp125Tyr	p.D125Y	ENST00000257290	NM_006206.4	125	Gat/Tat																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39321554	39321554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	151	457	0	ENST00000373001.3:c.467G>T	p.Arg156Ile	p.R156I	ENST00000373001	NM_022157.3	156	aGa/aTa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65321352	65321352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	124	624	0	ENST00000342505.4:c.1488G>T	p.Lys496Asn	p.K496N	ENST00000342505	NM_002227.2	496	aaG/aaT																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028055	69028055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	42	500	0	ENST00000288368.4:c.3214G>T	p.Asp1072Tyr	p.D1072Y	ENST00000288368	NM_024870.2	1072	Gac/Tac																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63661997	63661997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	136	435	0	ENST00000279873.7:c.101G>A	p.Arg34Lys	p.R34K	ENST00000279873	NM_032199.2	34	aGa/aAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685303	89685303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	31	251	0	ENST00000371953.3:c.198G>T	p.Lys66Asn	p.K66N	ENST00000371953	NM_000314.4	66	aaG/aaT																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719938	18719938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	117	395	0	ENST00000266497.5:c.3835G>T	p.Asp1279Tyr	p.D1279Y	ENST00000266497		1279	Gat/Tat																																																																														
TET1	80312	MSKCC	GRCh37	10	70332931	70332931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	195	640	0	ENST00000373644.4:c.836C>A	p.Ser279Tyr	p.S279Y	ENST00000373644	NM_030625.2	279	tCt/tAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266725	198266725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	58	487	0	ENST00000335508.6:c.2207G>A	p.Arg736His	p.R736H	ENST00000335508	NM_012433.2	736	cGc/cAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858064	9858064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	151	582	0	ENST00000330684.3:c.3337C>T	p.Pro1113Ser	p.P1113S	ENST00000330684	NM_001134407.1	1113	Cct/Tct																																																																														
POLE	5426	MSKCC	GRCh37	12	133250189	133250189	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	175	737	0	ENST00000320574.5:c.1331T>A	p.Met444Lys	p.M444K	ENST00000320574	NM_006231.2	444	aTg/aAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291858	15291858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	106	956	0	ENST00000263388.2:c.2908C>T	p.Pro970Ser	p.P970S	ENST00000263388	NM_000435.2	970	Ccc/Tcc																																																																														
ATR	545	MSKCC	GRCh37	3	142266692	142266692	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	123	440	0	ENST00000350721.4:c.3232G>T	p.Glu1078Ter	p.E1078*	ENST00000350721	NM_001184.3	1078	Gaa/Taa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256028	16256028	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	198	600	0	ENST00000375759.3:c.3293A>C	p.Asn1098Thr	p.N1098T	ENST00000375759	NM_015001.2	1098	aAt/aCt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264457	16264457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	206	791	0	ENST00000375759.3:c.10660C>T	p.Arg3554Trp	p.R3554W	ENST00000375759	NM_015001.2	3554	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100317	27100317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	67	664	0	ENST00000324856.7:c.4029C>A	p.Phe1343Leu	p.F1343L	ENST00000324856	NM_006015.4	1343	ttC/ttA																																																																														
AKT3	10000	MSKCC	GRCh37	1	243778403	243778403	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	96	365	0	ENST00000263826.5:c.622T>G	p.Leu208Val	p.L208V	ENST00000263826	NM_005465.4	208	Tta/Gta																																																																														
AKT3	10000	MSKCC	GRCh37	1	243859007	243859007	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	60	285	0	ENST00000263826.5:c.58A>C	p.Lys20Gln	p.K20Q	ENST00000263826	NM_005465.4	20	Aaa/Caa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851555	63851555	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	49	572	0	ENST00000279873.7:c.2333T>G	p.Leu778Arg	p.L778R	ENST00000279873	NM_032199.2	778	cTg/cGg																																																																														
TET1	80312	MSKCC	GRCh37	10	70411688	70411688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	98	373	0	ENST00000373644.4:c.4362G>T	p.Glu1454Asp	p.E1454D	ENST00000373644	NM_030625.2	1454	gaG/gaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720814	89720814	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	109	376	0	ENST00000371953.3:c.965A>C	p.Lys322Thr	p.K322T	ENST00000371953	NM_000314.4	322	aAa/aCa																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771540	112771540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	38	500	0	ENST00000369452.4:c.1713C>A	p.Phe571Leu	p.F571L	ENST00000369452	NM_007373.3	571	ttC/ttA																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711029	114711029	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	32	245	0	ENST00000543371.1:c.253G>T	p.Glu85Ter	p.E85*	ENST00000543371	NM_001198531.1	85	Gaa/Taa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94153304	94153304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	116	450	1	ENST00000323929.3:c.2114G>T	p.Arg705Ile	p.R705I	ENST00000323929	NM_005591.3	705	aGa/aTa																																																																														
ATM	472	MSKCC	GRCh37	11	108119694	108119694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	59	192	0	ENST00000278616.4:c.1100C>A	p.Ser367Tyr	p.S367Y	ENST00000278616	NM_000051.3	367	tCt/tAt																																																																														
ATM	472	MSKCC	GRCh37	11	108235878	108235878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	32	414	2	ENST00000278616.4:c.8920C>T	p.Pro2974Ser	p.P2974S	ENST00000278616	NM_000051.3	2974	Ccg/Tcg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343217	118343217	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	46	389	0	ENST00000534358.1:c.1343A>C	p.Asn448Thr	p.N448T	ENST00000534358	NM_005933.3	448	aAt/aCt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118347543	118347543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	67	442	0	ENST00000534358.1:c.3180G>T	p.Glu1060Asp	p.E1060D	ENST00000534358	NM_005933.3	1060	gaG/gaT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374685	118374685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	80	473	0	ENST00000534358.1:c.8078C>T	p.Ser2693Phe	p.S2693F	ENST00000534358	NM_005933.3	2693	tCt/tTt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	417156	417156	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	28	213	0	ENST00000399788.2:c.3394G>T	p.Glu1132Ter	p.E1132*	ENST00000399788	NM_001042603.1	1132	Gaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435026	18435026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	29	247	1	ENST00000266497.5:c.11C>A	p.Ser4Tyr	p.S4Y	ENST00000266497		4	tCt/tAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18443811	18443811	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	26	322	0	ENST00000266497.5:c.784G>T	p.Ala262Ser	p.A262S	ENST00000266497		262	Gct/Tct																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656299	18656299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	117	416	0	ENST00000266497.5:c.2978C>A	p.Thr993Lys	p.T993K	ENST00000266497		993	aCa/aAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793372	18793372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	93	367	1	ENST00000266497.5:c.4069G>T	p.Asp1357Tyr	p.D1357Y	ENST00000266497		1357	Gat/Tat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125011	46125011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	57	251	1	ENST00000334344.6:c.198G>T	p.Lys66Asn	p.K66N	ENST00000334344	NM_152641.2	66	aaG/aaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445815	49445815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1255	93	1100	1	ENST00000301067.7:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000301067	NM_003482.3	551	Gaa/Taa																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869547	102869547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	165	535	0	ENST00000307046.8:c.94C>A	p.Leu32Ile	p.L32I	ENST00000307046	NM_001111285.1	32	Ctc/Atc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32899311	32899311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	65	264	0	ENST00000380152.3:c.415C>A	p.Leu139Ile	p.L139I	ENST00000380152		139	Ctt/Att																																																																														
RB1	5925	MSKCC	GRCh37	13	48881473	48881473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	244	0	ENST00000267163.4:c.195G>T	p.Lys65Asn	p.K65N	ENST00000267163	NM_000321.2	65	aaG/aaT																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519172	103519172	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	36	371	0	ENST00000355739.4:c.2510A>G	p.Tyr837Cys	p.Y837C	ENST00000355739	NM_000123.3	837	tAt/tGt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041995	42041995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	94	565	0	ENST00000219905.7:c.6190G>T	p.Asp2064Tyr	p.D2064Y	ENST00000219905	NM_001164273.1	2064	Gat/Tat																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43739581	43739581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	105	371	0	ENST00000382044.4:c.2819G>T	p.Arg940Ile	p.R940I	ENST00000382044	NM_001141980.1	940	aGa/aTa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748837	43748837	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	224	819	0	ENST00000382044.4:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000382044	NM_001141980.1	657	Gaa/Taa																																																																														
IDH2	3418	MSKCC	GRCh37	15	90633789	90633789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	120	759	0	ENST00000330062.3:c.295G>T	p.Asp99Tyr	p.D99Y	ENST00000330062	NM_002168.2	99	Gac/Tac																																																																														
BLM	641	MSKCC	GRCh37	15	91347493	91347493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	66	504	0	ENST00000355112.3:c.3655C>A	p.Leu1219Ile	p.L1219I	ENST00000355112	NM_000057.2	1219	Ctt/Att																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645417	67645417	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	51	422	0	ENST00000264010.4:c.682T>G	p.Phe228Val	p.F228V	ENST00000264010	NM_006565.3	228	Ttt/Gtt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828147	72828147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	86	687	0	ENST00000268489.5:c.8434G>T	p.Asp2812Tyr	p.D2812Y	ENST00000268489	NM_006885.3	2812	Gac/Tac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829632	72829632	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	157	581	0	ENST00000268489.5:c.6949A>C	p.Asn2317His	p.N2317H	ENST00000268489	NM_006885.3	2317	Aat/Cat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830731	72830731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	55	636	1	ENST00000268489.5:c.5850G>T	p.Glu1950Asp	p.E1950D	ENST00000268489	NM_006885.3	1950	gaG/gaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830944	72830944	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	31	484	0	ENST00000268489.5:c.5637A>C	p.Lys1879Asn	p.K1879N	ENST00000268489	NM_006885.3	1879	aaA/aaC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993124	72993124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	245	877	1	ENST00000268489.5:c.921G>T	p.Met307Ile	p.M307I	ENST00000268489	NM_006885.3	307	atG/atT																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942121	81942121	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	51	638	0	ENST00000359376.3:c.1658A>G	p.Glu553Gly	p.E553G	ENST00000359376	NM_002661.3	553	gAg/gGg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40874924	40874924	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	170	555	0	ENST00000428826.2:c.376G>T	p.Glu126Ter	p.E126*	ENST00000428826		126	Gag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243658	41243658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	45	590	0	ENST00000357654.3:c.3890C>A	p.Ser1297Tyr	p.S1297Y	ENST00000357654	NM_007294.3	1297	tCt/tAt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740684	58740684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	182	603	0	ENST00000305921.3:c.1589C>A	p.Pro530His	p.P530H	ENST00000305921	NM_003620.3	530	cCt/cAt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619853	1619853	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	204	740	0	ENST00000344749.5:c.1094-1G>C		p.X365_splice	ENST00000344749	NM_001136139.2	365																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223306	2223306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	209	872	0	ENST00000398665.3:c.3417G>T	p.Glu1139Asp	p.E1139D	ENST00000398665	NM_032482.2	1139	gaG/gaT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10254586	10254586	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	191	624	0	ENST00000340748.4:c.2924A>C	p.Lys975Thr	p.K975T	ENST00000340748		975	aAa/aCa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18958592	18958592	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	245	710	0	ENST00000262803.5:c.411T>G	p.Cys137Trp	p.C137W	ENST00000262803	NM_002911.3	137	tgT/tgG																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52724238	52724238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	120	411	0	ENST00000322088.6:c.1370C>T	p.Ala457Val	p.A457V	ENST00000322088	NM_014225.5	457	gCc/gTc																																																																														
ALK	238	MSKCC	GRCh37	2	29446218	29446218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	133	515	0	ENST00000389048.3:c.3349A>G	p.Thr1117Ala	p.T1117A	ENST00000389048	NM_004304.4	1117	Acc/Gcc																																																																														
REL	5966	MSKCC	GRCh37	2	61128157	61128157	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	64	303	0	ENST00000295025.8:c.333G>T	p.Lys111Asn	p.K111N	ENST00000295025	NM_002908.2	111	aaG/aaT																																																																														
PMS1	5378	MSKCC	GRCh37	2	190738322	190738322	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	30	331	0	ENST00000441310.2:c.2574A>C	p.Leu858Phe	p.L858F	ENST00000441310	NM_000534.4	858	ttA/ttC																																																																														
CASP8	841	MSKCC	GRCh37	2	202131209	202131209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	94	347	0	ENST00000358485.4:c.177G>T	p.Lys59Asn	p.K59N	ENST00000358485	NM_001080125.1	59	aaG/aaT																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113162	209113162	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	52	369	0	ENST00000345146.2:c.345A>C	p.Lys115Asn	p.K115N	ENST00000345146	NM_005896.2	115	aaA/aaC																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662795	227662795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	81	873	0	ENST00000305123.5:c.660C>A	p.Phe220Leu	p.F220L	ENST00000305123	NM_005544.2	220	ttC/ttA																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024187	31024187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	97	607	0	ENST00000375687.4:c.3672G>T	p.Arg1224Ser	p.R1224S	ENST00000375687	NM_015338.5	1224	agG/agT																																																																														
AURKA	6790	MSKCC	GRCh37	20	54956587	54956587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	79	442	0	ENST00000312783.6:c.607G>A	p.Ala203Thr	p.A203T	ENST00000312783	NM_198436.1	203	Gct/Act																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961583	54961583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	57	374	0	ENST00000312783.6:c.49G>A	p.Ala17Thr	p.A17T	ENST00000312783	NM_198436.1	17	Gct/Act																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125218	47125218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	88	379	0	ENST00000409792.3:c.6052G>T	p.Asp2018Tyr	p.D2018Y	ENST00000409792	NM_014159.6	2018	Gac/Tac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162109	47162109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	89	371	0	ENST00000409792.3:c.4017G>T	p.Glu1339Asp	p.E1339D	ENST00000409792	NM_014159.6	1339	gaG/gaT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390923	89390923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	124	447	0	ENST00000336596.2:c.989G>T	p.Arg330Ile	p.R330I	ENST00000336596	NM_005233.5	330	aGa/aTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521730	89521730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	39	395	0	ENST00000336596.2:c.2807A>G	p.Glu936Gly	p.E936G	ENST00000336596	NM_005233.5	936	gAg/gGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938773	178938773	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	161	547	0	ENST00000263967.3:c.2016-1G>T		p.X672_splice	ENST00000263967	NM_006218.2	672																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185191002	185191002	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	263	831	0	ENST00000265026.3:c.1883A>G	p.Tyr628Cys	p.Y628C	ENST00000265026	NM_004721.4	628	tAc/tGc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502367	186502367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	49	354	0	ENST00000323963.5:c.90G>T	p.Glu30Asp	p.E30D	ENST00000323963		30	gaG/gaT																																																																														
BCL6	604	MSKCC	GRCh37	3	187444684	187444684	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	81	324	0	ENST00000232014.4:c.1543A>G	p.Asn515Asp	p.N515D	ENST00000232014	NM_001130845.1	515	Aac/Gac																																																																														
TP63	8626	MSKCC	GRCh37	3	189456541	189456541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	105	452	0	ENST00000264731.3:c.302C>T	p.Ser101Leu	p.S101L	ENST00000264731	NM_003722.4	101	tCg/tTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55956188	55956188	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	172	534	0	ENST00000263923.4:c.3127A>C	p.Lys1043Gln	p.K1043Q	ENST00000263923	NM_002253.2	1043	Aaa/Caa																																																																														
KDR	3791	MSKCC	GRCh37	4	55970907	55970907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	154	536	0	ENST00000263923.4:c.1890G>T	p.Lys630Asn	p.K630N	ENST00000263923	NM_002253.2	630	aaG/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538311	187538311	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	154	506	0	ENST00000441802.2:c.8923G>T	p.Glu2975Ter	p.E2975*	ENST00000441802	NM_005245.3	2975	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630410	187630410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	230	717	0	ENST00000441802.2:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000441802	NM_005245.3	191	cGa/cAa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754857	57754857	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	115	277	0	ENST00000274289.3:c.333A>C	p.Lys111Asn	p.K111N	ENST00000274289	NM_006622.3	111	aaA/aaC																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67575540	67575540	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	103	286	0	ENST00000274335.5:c.613G>T	p.Glu205Ter	p.E205*	ENST00000274335		205	Gaa/Taa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79961030	79961030	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138381683		P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	54	499	0	ENST00000265081.6:c.427G>A	p.Asp143Asn	p.D143N	ENST00000265081	NM_002439.4	143	Gat/Aat																																																																														
MSH3	4437	MSKCC	GRCh37	5	79966033	79966033	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	149	506	0	ENST00000265081.6:c.697G>T	p.Glu233Ter	p.E233*	ENST00000265081	NM_002439.4	233	Gaa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674356	86674356	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	27	210	0	ENST00000274376.6:c.2487+1G>T		p.X829_splice	ENST00000274376	NM_002890.2	829																																																																															
APC	324	MSKCC	GRCh37	5	112174893	112174893	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	89	247	0	ENST00000257430.4:c.3602C>A	p.Ser1201Ter	p.S1201*	ENST00000257430	NM_000038.5	1201	tCa/tAa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323147	31323147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	55	769	0	ENST00000412585.2:c.842A>G	p.Tyr281Cys	p.Y281C	ENST00000412585	NM_005514.6	281	tAc/tGc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289208	33289208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	157	555	1	ENST00000374542.5:c.344G>A	p.Arg115Gln	p.R115Q	ENST00000374542	NM_001141970.1	115	cGg/cAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120612	94120612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	102	376	0	ENST00000369303.4:c.439G>T	p.Asp147Tyr	p.D147Y	ENST00000369303	NM_004440.3	147	Gac/Tac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120862	94120862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	118	450	0	ENST00000369303.4:c.189G>T	p.Glu63Asp	p.E63D	ENST00000369303	NM_004440.3	63	gaG/gaT																																																																														
HGF	3082	MSKCC	GRCh37	7	81374383	81374383	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	49	346	0	ENST00000222390.5:c.679G>T	p.Glu227Ter	p.E227*	ENST00000222390	NM_000601.4	227	Gaa/Taa																																																																														
MET	4233	MSKCC	GRCh37	7	116411869	116411869	+	intron_variant	Intron	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1492	39	1047	0	ENST00000397752.3:c.2888-34C>A		p.*963*	ENST00000397752	NM_000245.2																																																																																
MET	4233	MSKCC	GRCh37	7	116412220	116412220	+	intron_variant	Intron	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	24	697	1	ENST00000397752.3:c.3028+177C>T		p.*1010*	ENST00000397752	NM_000245.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	152012226	152012226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	52	410	0	ENST00000262189.6:c.587G>T	p.Arg196Ile	p.R196I	ENST00000262189	NM_170606.2	196	aGa/aTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132713	152132713	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	16	229	0	ENST00000262189.6:c.159G>T	p.Lys53Asn	p.K53N	ENST00000262189	NM_170606.2	53	aaG/aaT																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146156	38146156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	248	771	0	ENST00000317025.8:c.3350G>T	p.Arg1117Ile	p.R1117I	ENST00000317025	NM_023034.1	1117	aGa/aTa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275504	38275504	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	52	573	0	ENST00000425967.3:c.1529T>G	p.Val510Gly	p.V510G	ENST00000425967	NM_001174067.1	510	gTc/gGc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141561499	141561499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	166	586	0	ENST00000220592.5:c.1306G>A	p.Asp436Asn	p.D436N	ENST00000220592	NM_012154.3	436	Gac/Aac																																																																														
JAK2	3717	MSKCC	GRCh37	9	5022093	5022093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	72	493	0	ENST00000381652.3:c.106G>T	p.Asp36Tyr	p.D36Y	ENST00000381652	NM_004972.3	36	Gat/Tat																																																																														
TEK	7010	MSKCC	GRCh37	9	27202846	27202846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	63	424	0	ENST00000380036.4:c.1938G>T	p.Lys646Asn	p.K646N	ENST00000380036	NM_000459.3	646	aaG/aaT																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900268	101900268	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	120	418	0	ENST00000374994.4:c.702C>A	p.Phe234Leu	p.F234L	ENST00000374994	NM_004612.2	234	ttC/ttA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941842	44941842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	117	194	0	ENST00000377967.4:c.3166C>A	p.His1056Asn	p.H1056N	ENST00000377967	NM_021140.2	1056	Cat/Aat																																																																														
AR	367	MSKCC	GRCh37	X	66942713	66942713	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	140	243	0	ENST00000374690.3:c.2494C>T	p.Arg832Ter	p.R832*	ENST00000374690	NM_000044.3	832	Cga/Tga																																																																														
BTK	695	MSKCC	GRCh37	X	100612572	100612572	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	38	181	0	ENST00000308731.7:c.1103-1G>A		p.X368_splice	ENST00000308731	NM_000061.2	368																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	563	891	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	212	511	2	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	231	527	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877391	40877391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	307	740	0	ENST00000373198.4:c.2305G>A	p.Val769Met	p.V769M	ENST00000373198	NM_133170.3	769	Gtg/Atg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518246	8518246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	44	421	0	ENST00000356435.5:c.1145G>A	p.Gly382Glu	p.G382E	ENST00000356435		382	gGa/gAa																																																																														
RET	5979	MSKCC	GRCh37	10	43622038	43622038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	169	492	0	ENST00000355710.3:c.3055G>A	p.Ala1019Thr	p.A1019T	ENST00000355710	NM_020975.4	1019	Gcg/Acg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133685	41133685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	52	482	0	ENST00000379561.5:c.1943C>T	p.Thr648Met	p.T648M	ENST00000379561	NM_002015.3	648	aCg/aTg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78433310	78433310	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	82	368	1	ENST00000370768.2:c.290+1G>A		p.X97_splice	ENST00000370768	NM_003902.3	97																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	138	320	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982989	201982990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	348	790	0	ENST00000359651.3:c.841dup	p.Asp281GlyfsTer20	p.D281Gfs*20	ENST00000359651		280	cgg/cGgg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32905124	32905127	+	frameshift_variant	Frame_Shift_Del	DEL	GACA	GACA	-	rs1455701926		P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	53	391	0	ENST00000380152.3:c.755_758del	p.Asp252ValfsTer24	p.D252Vfs*24	ENST00000380152		250	gtGACA/gt																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023193	33023193	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	258	499	0	ENST00000300177.4:c.302A>C	p.Gln101Pro	p.Q101P	ENST00000300177	NM_001191322.1	101	cAg/cCg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43738759	43738759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	152	462	0	ENST00000382044.4:c.2866G>A	p.Ala956Thr	p.A956T	ENST00000382044	NM_001141980.1	956	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	317	725	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SRC	6714	MSKCC	GRCh37	20	36024598	36024598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	184	748	0	ENST00000358208.4:c.587A>G	p.Asn196Ser	p.N196S	ENST00000358208		196	aAc/aGc																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72866404	72866404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	26	320	0	ENST00000325599.8:c.859C>T	p.Arg287Cys	p.R287C	ENST00000325599	NM_018130.2	287	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	101	327	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425977	49425977	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	259	700	0	ENST00000301067.7:c.12511C>T	p.Gln4171Ter	p.Q4171*	ENST00000301067	NM_003482.3	4171	Caa/Taa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	76	404	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0041696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	258	940	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29528489	29528489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	66	422	0	ENST00000358273.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000358273	NM_001042492.2	416	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437531	56437531	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	199	807	0	ENST00000407977.2:c.931del	p.Leu311SerfsTer108	p.L311Sfs*108	ENST00000407977		311	Ctc/tc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644781	67644781	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	62	515	2	ENST00000264010.4:c.46T>C	p.Phe16Leu	p.F16L	ENST00000264010	NM_006565.3	16	Ttt/Ctt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	129	759	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206648230	206648230	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	125	624	0	ENST00000367120.3:c.251T>A	p.Leu84Gln	p.L84Q	ENST00000367120	NM_014002.3	84	cTg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653862	89653866	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GTAAG	GTAAG	-			P-0043235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	50	438	0	ENST00000371953.3:c.164+1_164+5del		p.VR54fs	ENST00000371953	NM_000314.4	54	GTAAGg/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	78	375	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	311	769	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	178	692	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593426	48593426	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	156	489	0	ENST00000342988.3:c.1178del	p.Gly393ValfsTer22	p.G393Vfs*22	ENST00000342988	NM_005359.5	393	Ggt/gt																																																																														
APC	324	MSKCC	GRCh37	5	112173306	112173317	+	frameshift_variant	Frame_Shift_Del	DEL	ATAGTTTGACAA	ATAGTTTGACAA	T			P-0043293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	53	247	0	ENST00000257430.4:c.2015_2026delinsT	p.His672LeufsTer4	p.H672Lfs*4	ENST00000257430	NM_000038.5	672	cATAGTTTGACAAta/cTta																																																																														
APC	324	MSKCC	GRCh37	5	112175595	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGTA	GAAGTA	AAAGT			P-0043293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	146	444	2	ENST00000257430.4:c.4304_4309delinsAAAGT	p.Arg1435LysfsTer38	p.R1435Kfs*38	ENST00000257430	NM_000038.5	1435	aGAAGTAaa/aAAAGTaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	43	704	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	408	748	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310820	123310820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	138	613	3	ENST00000358487.5:c.608G>A	p.Arg203His	p.R203H	ENST00000358487	NM_000141.4	203	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	63	348	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857910	9857910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	211	674	0	ENST00000330684.3:c.3491C>T	p.Thr1164Met	p.T1164M	ENST00000330684	NM_001134407.1	1164	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	131	425	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117964	70117965	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	163	348	0	ENST00000245479.2:c.431+2dup		p.X144_splice	ENST00000245479	NM_000346.3	144																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	250	422	20	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																														
APC	324	MSKCC	GRCh37	5	112162945	112162945	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	92	364	0	ENST00000257430.4:c.1548+1G>T		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																															
LATS2	26524	MSKCC	GRCh37	13	21563428	21563428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	351	831	0	ENST00000382592.4:c.491C>T	p.Pro164Leu	p.P164L	ENST00000382592	NM_014572.2	164	cCa/cTa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894961	101895339	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAGAGGGTACTACGTTGAAAGACTTAATTTATGATATGACAACGTCAGGTTCTGGCTCAGGTAACATAATTGTTTCTCCTTTTTCCTAAGACATCTTTTTAAAATTAAGCGATACTTATTTTATTAGTTTTCTAATAAGCCAACTTGCTAGAATGTGAGATAGTATAAATAATATTGCAGGTTTGAACCTAATAAAAATCTTTAAGCTTGATGTATATATGACTGTGGCTGGTTTAAAATAGATTGGAACTTAACTTTAACTGTTAAAGCGAATCAATAAGTCAGCTCCATGGTGGTATAAATTTCAAAGCGTTCTCACTTGTATAATCTAATTTGCTTTTCATCACTGTGAGGTAGAAAGGATAAGAACAATTATTC	TCAGAGGGTACTACGTTGAAAGACTTAATTTATGATATGACAACGTCAGGTTCTGGCTCAGGTAACATAATTGTTTCTCCTTTTTCCTAAGACATCTTTTTAAAATTAAGCGATACTTATTTTATTAGTTTTCTAATAAGCCAACTTGCTAGAATGTGAGATAGTATAAATAATATTGCAGGTTTGAACCTAATAAAAATCTTTAAGCTTGATGTATATATGACTGTGGCTGGTTTAAAATAGATTGGAACTTAACTTTAACTGTTAAAGCGAATCAATAAGTCAGCTCCATGGTGGTATAAATTTCAAAGCGTTCTCACTTGTATAATCTAATTTGCTTTTCATCACTGTGAGGTAGAAAGGATAAGAACAATTATTC	-			P-0043555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	50	338	0	ENST00000374994.4:c.517_574+321del		p.X173_splice	ENST00000374994	NM_004612.2	173																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	41	351	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	59	474	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	45	335	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120232	70120232	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1205	256	639	0	ENST00000245479.2:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000245479	NM_000346.3	412	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	90	327	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	171	620	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	65	373	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45003746	45003746	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	188	456	0	ENST00000558401.1:c.2T>C	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	aTg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	219	695	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																														
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	88	375	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3790455	3790455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	208	593	3	ENST00000262367.5:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000262367	NM_004380.2	1360	Cga/Tga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136949	64136949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	203	555	0	ENST00000334205.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000334205	NM_003942.2	487	cGg/cAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	156	445	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411291	63411291	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	255	369	1	ENST00000330258.3:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000330258	NM_152424.3	626	Cga/Tga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004247	150004247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	26	298	0	ENST00000253339.5:c.1978C>T	p.Arg660Cys	p.R660C	ENST00000253339		660	Cgt/Tgt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119758	70119758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	192	625	0	ENST00000245479.2:c.760C>T	p.Arg254Ter	p.R254*	ENST00000245479	NM_000346.3	254	Cga/Tga																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44520566	44520566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	118	351	0	ENST00000291552.4:c.196C>T	p.Arg66Cys	p.R66C	ENST00000291552	NM_006758.2	66	Cgc/Tgc																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945048	31945048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	236	677	1	ENST00000340398.3:c.53G>A	p.Arg18His	p.R18H	ENST00000340398	NM_001013699.2	18	cGc/cAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905324	50905324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1241	252	840	6	ENST00000440232.2:c.537del	p.Arg180GlyfsTer3	p.R180Gfs*3	ENST00000440232	NM_002691.3	178	Ggg/gg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99203950	99203950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	64	353	0	ENST00000074304.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000074304	NM_001134224.1	938	cGa/cAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719724	61719724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	50	546	0	ENST00000401558.2:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000401558	NM_003400.3	515	cGa/cAa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24159112	24159112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	150	416	1	ENST00000263121.7:c.784G>A	p.Val262Ile	p.V262I	ENST00000263121	NM_003073.3	262	Gtc/Atc																																																																														
B2M	567	MSKCC	GRCh37	15	45007752	45007753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	73	410	0	ENST00000558401.1:c.204dup	p.Val69SerfsTer21	p.V69Sfs*21	ENST00000558401	NM_004048.2	67	gaa/gAaa																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856595	111856595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	122	144	0	ENST00000341259.2:c.646C>T	p.Arg216Cys	p.R216C	ENST00000341259	NM_005475.2	216	Cgc/Tgc																																																																														
SYK	6850	MSKCC	GRCh37	9	93637062	93637062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	169	501	0	ENST00000375746.1:c.1112C>T	p.Thr371Met	p.T371M	ENST00000375746	NM_001174167.1	371	aCg/aTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133738315	133738315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	220	569	1	ENST00000318560.5:c.715C>T	p.Arg239Cys	p.R239C	ENST00000318560	NM_005157.4	239	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	246	761	4	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																														
ABL1	25	MSKCC	GRCh37	9	133759395	133759395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	212	651	0	ENST00000318560.5:c.1718C>T	p.Pro573Leu	p.P573L	ENST00000318560	NM_005157.4	573	cCt/cTt																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140172	50140172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	169	541	0	ENST00000246792.3:c.253G>A	p.Ala85Thr	p.A85T	ENST00000246792	NM_006270.3	85	Gcg/Acg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12633207	12633207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	154	502	0	ENST00000251849.4:c.1193G>T	p.Arg398Leu	p.R398L	ENST00000251849	NM_002880.3	398	cGc/cTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528952	157528952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	143	468	1	ENST00000346085.5:c.6677C>T	p.Ser2226Leu	p.S2226L	ENST00000346085	NM_020732.3	2226	tCg/tTg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741660	17741660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	166	348	2	ENST00000250003.3:c.331C>T	p.Arg111Cys	p.R111C	ENST00000250003	NM_002478.4	111	Cgc/Tgc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246518359	246518359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	82	418	0	ENST00000388985.4:c.202G>A	p.Ala68Thr	p.A68T	ENST00000388985		68	Gcc/Acc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745596	162745596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	105	490	0	ENST00000367921.3:c.2011C>T	p.Pro671Ser	p.P671S	ENST00000367921	NM_006182.2	671	Ccc/Tcc																																																																														
KDR	3791	MSKCC	GRCh37	4	55964400	55964400	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149212892		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	113	496	0	ENST00000263923.4:c.2413G>A	p.Val805Ile	p.V805I	ENST00000263923	NM_002253.2	805	Gtc/Atc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356406	66356406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	57	388	0	ENST00000273854.3:c.1091C>T	p.Ala364Val	p.A364V	ENST00000273854	NM_004439.5	364	gCc/gTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729709	41729709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	177	589	0	ENST00000242208.4:c.820G>A	p.Gly274Arg	p.G274R	ENST00000242208	NM_002192.2	274	Gga/Aga																																																																														
SESN2	83667	MSKCC	GRCh37	1	28586359	28586359	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	132	514	0	ENST00000253063.3:c.1A>G	p.Met1?	p.M1?	ENST00000253063	NM_031459.4	1	Atg/Gtg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430375	78430375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	68	425	0	ENST00000370768.2:c.793C>T	p.Arg265Trp	p.R265W	ENST00000370768	NM_003902.3	265	Cgg/Tgg																																																																														
RET	5979	MSKCC	GRCh37	10	43600424	43600424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	177	546	0	ENST00000355710.3:c.650C>T	p.Ala217Val	p.A217V	ENST00000355710	NM_020975.4	217	gCc/gTc																																																																														
TET1	80312	MSKCC	GRCh37	10	70333485	70333485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	111	533	0	ENST00000373644.4:c.1390G>T	p.Gly464Cys	p.G464C	ENST00000373644	NM_030625.2	464	Ggt/Tgt																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201718	67201718	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199570304		P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	160	564	0	ENST00000312629.5:c.1019G>A	p.Arg340His	p.R340H	ENST00000312629	NM_003952.2	340	cGt/cAt																																																																														
SETD8	0	MSKCC	GRCh37	12	123879659	123879659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	89	237	0	ENST00000330479.4:c.355G>A	p.Ala119Thr	p.A119T	ENST00000330479	NM_020382.3	119	Gcc/Acc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217287	7217287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	181	560	0	ENST00000380728.2:c.418C>T	p.Arg140Cys	p.R140C	ENST00000380728		140	Cgc/Tgc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657548	37657548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	41	455	1	ENST00000447079.4:c.2465G>T	p.Gly822Val	p.G822V	ENST00000447079	NM_015083.1	822	gGa/gTa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612394	1612394	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	250	775	0	ENST00000344749.5:c.1625T>C	p.Leu542Pro	p.L542P	ENST00000344749	NM_001136139.2	542	cTg/cCg																																																																														
INSR	3643	MSKCC	GRCh37	19	7141771	7141771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	181	682	0	ENST00000302850.5:c.2599G>A	p.Val867Ile	p.V867I	ENST00000302850	NM_000208.2	867	Gtc/Atc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10277309	10277309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	229	765	0	ENST00000340748.4:c.808G>A	p.Val270Met	p.V270M	ENST00000340748		270	Gtg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170754	11170754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	246	697	0	ENST00000344626.4:c.4802G>A	p.Arg1601Gln	p.R1601Q	ENST00000344626	NM_003072.3	1601	cGg/cAg																																																																														
CCNE1	898	MSKCC	GRCh37	19	30314584	30314584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	140	642	0	ENST00000262643.3:c.1133C>T	p.Ala378Val	p.A378V	ENST00000262643	NM_001238.2	378	gCc/gTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860548	45860548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	258	730	0	ENST00000391945.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000391945	NM_000400.3	487	Cgg/Tgg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50920501	50920501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	184	602	0	ENST00000440232.2:c.3193C>A	p.Leu1065Met	p.L1065M	ENST00000440232	NM_002691.3	1065	Ctg/Atg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131394	202131394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	118	521	0	ENST00000358485.4:c.362T>C	p.Leu121Pro	p.L121P	ENST00000358485	NM_001080125.1	121	cTg/cCg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24167529	24167529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	226	650	1	ENST00000263121.7:c.913G>A	p.Gly305Arg	p.G305R	ENST00000263121	NM_003073.3	305	Ggg/Agg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098705	47098705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	177	617	0	ENST00000409792.3:c.6569C>A	p.Pro2190His	p.P2190H	ENST00000409792	NM_014159.6	2190	cCc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921558	178921558	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	23	347	0	ENST00000263967.3:c.1040A>T	p.Asn347Ile	p.N347I	ENST00000263967	NM_006218.2	347	aAt/aTt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155038	55155038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	105	460	0	ENST00000257290.5:c.2747C>T	p.Ala916Val	p.A916V	ENST00000257290	NM_006206.4	916	gCc/gTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55564453	55564453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	123	384	0	ENST00000288135.5:c.341C>A	p.Pro114His	p.P114H	ENST00000288135	NM_000222.2	114	cCt/cAt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946307	2946307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	285	807	0	ENST00000396946.4:c.3430C>T	p.Arg1144Cys	p.R1144C	ENST00000396946	NM_032415.4	1144	Cgc/Tgc																																																																														
SYK	6850	MSKCC	GRCh37	9	93639944	93639944	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	89	295	0	ENST00000375746.1:c.1273C>T	p.Gln425Ter	p.Q425*	ENST00000375746	NM_001174167.1	425	Cag/Tag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321297	1321297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	161	532	0	ENST00000381566.1:c.458G>A	p.Arg153Gln	p.R153Q	ENST00000381566		153	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	478	582	7	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260476	16260476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	311	406	8	ENST00000375759.3:c.7741C>T	p.Pro2581Ser	p.P2581S	ENST00000375759	NM_015001.2	2581	Cct/Tct																																																																														
RB1	5925	MSKCC	GRCh37	13	49039462	49039462	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	297	408	3	ENST00000267163.4:c.2447del	p.Ser816Ter	p.S816*	ENST00000267163	NM_000321.2	816	tCa/ta																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061675	38061675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	216	207	1	ENST00000250448.2:c.314G>A	p.Gly105Asp	p.G105D	ENST00000250448	NM_004496.3	105	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	109	192	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	256	304	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0043737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	365	564	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	343	240	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935606	13935606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	142	286	0	ENST00000405192.2:c.1250G>A	p.Arg417His	p.R417H	ENST00000405192	NM_001163147.1	417	cGt/cAt																																																																														
MED12	9968	MSKCC	GRCh37	X	70354667	70354667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	151	323	0	ENST00000374080.3:c.4832G>A	p.Arg1611His	p.R1611H	ENST00000374080		1611	cGt/cAt																																																																														
PGR	5241	MSKCC	GRCh37	11	100912760	100912760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	33	278	0	ENST00000325455.5:c.2562G>T	p.Lys854Asn	p.K854N	ENST00000325455	NM_001202474.3	854	aaG/aaT																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941169	36941169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	46	390	0	ENST00000361632.4:c.170C>T	p.Pro57Leu	p.P57L	ENST00000361632		57	cCg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435260	56435260	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	81	375	0	ENST00000407977.2:c.1877del	p.Pro626GlnfsTer74	p.P626Qfs*74	ENST00000407977		626	cCa/ca																																																																														
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	95	168	0	ENST00000257430.4:c.4067del	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/ta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GG			P-0043939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	483	307	0	ENST00000269305.4:c.584delinsCC	p.Ile195ThrfsTer14	p.I195Tfs*14	ENST00000269305	NM_001126112.2	195	aTc/aCCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	314	806	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	37	208	1	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303270	15303270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	297	1008	0	ENST00000263388.2:c.258del	p.Cys87ValfsTer149	p.C87Vfs*149	ENST00000263388	NM_000435.2	86	ccC/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	335	617	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053562	37053562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	103	493	1	ENST00000231790.2:c.649C>T	p.Arg217Cys	p.R217C	ENST00000231790	NM_000249.3	217	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175452	112175452	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	131	339	0	ENST00000257430.4:c.4161T>A	p.Cys1387Ter	p.C1387*	ENST00000257430	NM_000038.5	1387	tgT/tgA																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30099978	30099978	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	41	461	0	ENST00000331968.5:c.1642T>A	p.Ser548Thr	p.S548T	ENST00000331968	NM_002742.2	548	Tcc/Acc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473653	67473653	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	166	548	0	ENST00000327367.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000327367	NM_005902.3	245	Ggg/Cgg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509857	106509857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	131	625	0	ENST00000359195.3:c.1851G>T	p.Trp617Cys	p.W617C	ENST00000359195	NM_002649.2	617	tgG/tgT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	25	324	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473653	67473653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	123	520	0	ENST00000327367.4:c.733G>A	p.Gly245Arg	p.G245R	ENST00000327367	NM_005902.3	245	Ggg/Agg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78428562	78428562	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	31	322	1	ENST00000370768.2:c.1237C>T	p.Gln413Ter	p.Q413*	ENST00000370768	NM_003902.3	413	Cag/Tag																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45422959	45422959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	42	292	0	ENST00000262160.6:c.169C>T	p.Arg57Ter	p.R57*	ENST00000262160	NM_005901.5	57	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946337	2946337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	160	624	0	ENST00000396946.4:c.3400G>A	p.Val1134Ile	p.V1134I	ENST00000396946	NM_032415.4	1134	Gtt/Att																																																																														
MALT1	10892	MSKCC	GRCh37	18	56339006	56339007	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	19	62	0	ENST00000348428.3:c.133dup	p.Leu45ProfsTer36	p.L45Pfs*36	ENST00000348428	NM_006785.3	44	ctc/ctCc																																																																														
APC	324	MSKCC	GRCh37	5	112102895	112102898	+	frameshift_variant	Frame_Shift_Del	DEL	TAGA	TAGA	-			P-0044364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	18	222	0	ENST00000257430.4:c.233_236del	p.Asp78AlafsTer7	p.D78Afs*7	ENST00000257430	NM_000038.5	77	tTAGAt/tt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0044437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	197	339	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	261	600	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138426006	138426006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	80	352	1	ENST00000289153.2:c.1525G>A	p.Asp509Asn	p.D509N	ENST00000289153	NM_006219.2	509	Gat/Aat																																																																														
SESN2	83667	MSKCC	GRCh37	1	28605738	28605738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	82	514	0	ENST00000253063.3:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000253063	NM_031459.4	448	Cgc/Tgc																																																																														
ETV1	2115	MSKCC	GRCh37	7	14027792	14027792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	97	239	0	ENST00000405192.2:c.52C>T	p.Arg18Cys	p.R18C	ENST00000405192	NM_001163147.1	18	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	191	392	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	150	318	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																														
WT1	7490	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	219	570	0	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																																																														
ALK	238	MSKCC	GRCh37	2	29606700	29606700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	80	551	0	ENST00000389048.3:c.1180G>A	p.Gly394Arg	p.G394R	ENST00000389048	NM_004304.4	394	Ggg/Agg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222867	5222867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	188	532	0	ENST00000357368.4:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000357368	NM_002850.3	979	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577563	7577571	+	inframe_deletion	In_Frame_Del	DEL	TGTTACACA	TGTTACACA	-			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	320	602	1	ENST00000269305.4:c.710_718del	p.Met237_Asn239del	p.M237_N239del	ENST00000269305	NM_001126112.2	237	aTGTGTAACAgt/agt																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633574	69633574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	183	220	0	ENST00000334134.2:c.128C>T	p.Pro43Leu	p.P43L	ENST00000334134	NM_005247.2	43	cCc/cTc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99451936	99451936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	93	310	0	ENST00000268035.6:c.1270G>A	p.Asp424Asn	p.D424N	ENST00000268035	NM_000875.3	424	Gac/Aac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259167	89259167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	121	343	0	ENST00000336596.2:c.311G>T	p.Arg104Leu	p.R104L	ENST00000336596	NM_005233.5	104	cGa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112173348	112173349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	84	301	0	ENST00000257430.4:c.2062_2063dup	p.Ala689GlnfsTer30	p.A689Qfs*30	ENST00000257430	NM_000038.5	686	aat/aaTCt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622147	117622147	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	20	260	0	ENST00000368508.3:c.6723A>C	p.Glu2241Asp	p.E2241D	ENST00000368508	NM_002944.2	2241	gaA/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0045109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	422	587	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	149	219	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																														
EED	8726	MSKCC	GRCh37	11	85988037	85988037	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	34	189	0	ENST00000263360.6:c.982A>C	p.Ile328Leu	p.I328L	ENST00000263360	NM_003797.3	328	Att/Ctt																																																																														
BRAF	673	MSKCC	GRCh37	7	140482898	140482898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	382	557	2	ENST00000288602.6:c.1237G>A	p.Val413Met	p.V413M	ENST00000288602	NM_004333.4	413	Gtg/Atg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	73	455	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	146	590	0	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563311	21563311	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77919685		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	185	1026	2	ENST00000382592.4:c.608C>T	p.Ala203Val	p.A203V	ENST00000382592	NM_014572.2	203	gCg/gTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	291	749	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	77	338	3	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	143	831	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
MITF	4286	MSKCC	GRCh37	3	70014077	70014077	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201351378		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	97	525	0	ENST00000352241.4:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000352241	NM_198159.2	414	cGg/cAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	141	780	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	87	510	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	92	398	1	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	171	782	8	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152198	11152200	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	171	793	0	ENST00000344626.4:c.4391_4393del	p.Lys1464del	p.K1464del	ENST00000344626	NM_003072.3	1462	atGAAg/atg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720803	89720804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	39	328	0	ENST00000371953.3:c.955dup	p.Thr319AsnfsTer6	p.T319Nfs*6	ENST00000371953	NM_000314.4	318	-/A																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110203	3110203	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147528229		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	166	838	1	ENST00000078429.4:c.193G>A	p.Ala65Thr	p.A65T	ENST00000078429	NM_002067.2	65	Gcc/Acc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755426	39755427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	108	601	2	ENST00000288319.7:c.1338dup	p.Ala447CysfsTer19	p.A447Cfs*19	ENST00000288319	NM_182918.3	446	-/T																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354007	15354008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	24	310	0	ENST00000263377.2:c.2872dup	p.Leu958ProfsTer135	p.L958Pfs*135	ENST00000263377	NM_058243.2	958	ctg/cCtg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	133	640	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	65	949	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	119	496	0	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350772	89350775	+	frameshift_variant	Frame_Shift_Del	DEL	TTTG	TTTG	-	rs886039734		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	196	845	0	ENST00000301030.4:c.2175_2178del	p.Asn725LysfsTer23	p.N725Kfs*23	ENST00000301030	NM_001256183.1	725	aaCAAA/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	172	691	2	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350105	89350105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	220	947	0	ENST00000301030.4:c.2845C>T	p.Arg949Trp	p.R949W	ENST00000301030	NM_001256183.1	949	Cgg/Tgg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099427	157099432	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1234257273		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	38	313	0	ENST00000346085.5:c.381_386del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	122	CAGCAG/-																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46587791	46587791	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	101	437	2	ENST00000263734.3:c.475del	p.Ser159AlafsTer12	p.S159Afs*12	ENST00000263734	NM_001430.4	157	Aaa/aa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs768101780		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	188	822	0	ENST00000543371.1:c.1485del	p.Ser496ProfsTer5	p.S496Pfs*5	ENST00000543371	NM_001198531.1	494	Ccc/cc																																																																														
POLE	5426	MSKCC	GRCh37	12	133220100	133220100	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	158	874	0	ENST00000320574.5:c.4337T>C	p.Val1446Ala	p.V1446A	ENST00000320574	NM_006231.2	1446	gTg/gCg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192645	138192645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	103	414	0	ENST00000237289.4:c.281C>T	p.Ala94Val	p.A94V	ENST00000237289	NM_001270507.1	94	gCg/gTg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29092947	29092947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	126	520	0	ENST00000328354.6:c.1037G>A	p.Arg346His	p.R346H	ENST00000328354	NM_007194.3	346	cGt/cAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808001	3808001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	134	574	1	ENST00000262367.5:c.3418C>T	p.Arg1140Trp	p.R1140W	ENST00000262367	NM_004380.2	1140	Cgg/Tgg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	212	1065	2	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098009	178098009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	78	357	0	ENST00000397062.3:c.371C>T	p.Ala124Val	p.A124V	ENST00000397062	NM_006164.4	124	gCg/gTg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11015633	11015634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	131	496	1	ENST00000327064.4:c.235_236dup	p.Phe80SerfsTer46	p.F80Sfs*46	ENST00000327064	NM_199141.1	76	gat/gaTGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162429	47162429	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	100	448	0	ENST00000409792.3:c.3697del	p.Thr1233GlnfsTer3	p.T1233Qfs*3	ENST00000409792	NM_014159.6	1233	Aca/ca																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022738	12022738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	117	559	0	ENST00000396373.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000396373	NM_001987.4	282	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133244124	133244124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	172	525	2	ENST00000320574.5:c.2284C>T	p.Arg762Trp	p.R762W	ENST00000320574	NM_006231.2	762	Cgg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271507	15271507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	245	1205	1	ENST00000263388.2:c.6932C>T	p.Pro2311Leu	p.P2311L	ENST00000263388	NM_000435.2	2311	cCg/cTg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1936885	1936885	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1445291234		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	72	462	1	ENST00000382891.5:c.1576del	p.Arg526GlufsTer72	p.R526Efs*72	ENST00000382891	NM_133335.3	524	Aaa/aa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258735	16258735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	116	583	2	ENST00000375759.3:c.6005del	p.Asn2002MetfsTer20	p.N2002Mfs*20	ENST00000375759	NM_015001.2	2000	ggA/gg																																																																														
MDM4	4194	MSKCC	GRCh37	1	204515953	204515953	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	63	417	0	ENST00000367182.3:c.851T>G	p.Leu284Arg	p.L284R	ENST00000367182	NM_001278516.1	284	cTg/cGg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715673	18715673	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	52	304	0	ENST00000266497.5:c.3504A>T	p.Lys1168Asn	p.K1168N	ENST00000266497		1168	aaA/aaT																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495604	56495604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	96	580	0	ENST00000267101.3:c.3794G>A	p.Arg1265Gln	p.R1265Q	ENST00000267101	NM_001982.3	1265	cGg/cAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560386	95560386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	137	565	0	ENST00000343455.3:c.5203C>A	p.Leu1735Met	p.L1735M	ENST00000343455	NM_177438.2	1735	Ctg/Atg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482758	67482758	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	98	505	0	ENST00000327367.4:c.1162A>T	p.Thr388Ser	p.T388S	ENST00000327367	NM_005902.3	388	Act/Tct																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250839	99250839	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	99	501	0	ENST00000268035.6:c.143G>C	p.Arg48Pro	p.R48P	ENST00000268035	NM_000875.3	48	cGc/cCc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134431	30134431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	164	748	2	ENST00000263025.4:c.100C>T	p.Gln34Ter	p.Q34*	ENST00000263025	NM_002746.2	34	Cag/Tag																																																																														
CYLD	1540	MSKCC	GRCh37	16	50828136	50828136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	65	338	0	ENST00000398568.2:c.2474C>T	p.Pro825Leu	p.P825L	ENST00000398568	NM_001042412.1	825	cCg/cTg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618866	37618868	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs955200004		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	150	663	0	ENST00000447079.4:c.544_546del	p.Glu182del	p.E182del	ENST00000447079	NM_015083.1	181	aAGGag/aag																																																																														
INSR	3643	MSKCC	GRCh37	19	7184535	7184535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	180	552	1	ENST00000302850.5:c.766C>T	p.Arg256Cys	p.R256C	ENST00000302850	NM_000208.2	256	Cgc/Tgc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250885	10250885	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	163	789	1	ENST00000340748.4:c.3595A>G	p.Met1199Val	p.M1199V	ENST00000340748		1199	Atg/Gtg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213533	36213533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	244	1193	0	ENST00000222270.7:c.2635C>A	p.Leu879Met	p.L879M	ENST00000222270	NM_014727.1	879	Ctg/Atg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716224	52716224	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	147	670	0	ENST00000322088.6:c.668T>C	p.Leu223Pro	p.L223P	ENST00000322088	NM_014225.5	223	cTg/cCg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566886	212566886	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	65	214	0	ENST00000342788.4:c.1295T>C	p.Leu432Pro	p.L432P	ENST00000342788	NM_005235.2	432	cTg/cCg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023506	31023506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	116	506	0	ENST00000375687.4:c.2991G>C	p.Glu997Asp	p.E997D	ENST00000375687	NM_015338.5	997	gaG/gaC																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175836	24175836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	137	781	0	ENST00000263121.7:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000263121	NM_003073.3	355	aCt/aTt																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374672	149374672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	175	751	0	ENST00000360632.3:c.422A>G	p.Tyr141Cys	p.Y141C	ENST00000360632	NM_015472.4	141	tAc/tGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250933	153250933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	44	245	0	ENST00000281708.4:c.1127T>C	p.Leu376Pro	p.L376P	ENST00000281708	NM_033632.3	376	cTg/cCg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589238	67589238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	81	366	0	ENST00000274335.5:c.1226G>A	p.Arg409Gln	p.R409Q	ENST00000274335		409	cGg/cAg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047918	180047918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	173	938	0	ENST00000261937.6:c.2257G>A	p.Ala753Thr	p.A753T	ENST00000261937	NM_182925.4	753	Gcc/Acc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975415	13975415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	127	483	0	ENST00000405192.2:c.472A>G	p.Thr158Ala	p.T158A	ENST00000405192	NM_001163147.1	158	Aca/Gca																																																																														
BRAF	673	MSKCC	GRCh37	7	140482918	140482918	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	151	724	1	ENST00000288602.6:c.1217T>C	p.Leu406Ser	p.L406S	ENST00000288602	NM_004333.4	406	tTa/tCa																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020741	37020741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	147	609	0	ENST00000358127.4:c.104A>G	p.Asp35Gly	p.D35G	ENST00000358127	NM_001280556.1	35	gAt/gGt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137309058	137309058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139536056		P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	224	1087	0	ENST00000481739.1:c.665C>T	p.Ser222Leu	p.S222L	ENST00000481739	NM_002957.4	222	tCg/tTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006840	47006840	+	5_prime_UTR_variant	5'UTR	SNP	T	T	C			P-0045253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	197	420	0	ENST00000329236.7:c.-41T>C		p.*14*	ENST00000329236	NM_001204466.1																																																																																
PIK3CD	5293	MSKCC	GRCh37	1	9776057	9776057	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148638384		P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	233	786	1	ENST00000377346.4:c.521C>T	p.Ser174Leu	p.S174L	ENST00000377346	NM_005026.3	174	tCg/tTg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984430	201984430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	106	531	1	ENST00000359651.3:c.1095G>T	p.Glu365Asp	p.E365D	ENST00000359651		365	gaG/gaT																																																																														
POLE	5426	MSKCC	GRCh37	12	133201519	133201519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	184	769	0	ENST00000320574.5:c.6719G>A	p.Gly2240Glu	p.G2240E	ENST00000320574	NM_006231.2	2240	gGa/gAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133209259	133209259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	382	719	1	ENST00000320574.5:c.6127G>A	p.Ala2043Thr	p.A2043T	ENST00000320574	NM_006231.2	2043	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	96	595	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	158	555	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
CD79B	974	MSKCC	GRCh37	17	62006635	62006635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	151	650	0	ENST00000392795.3:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000392795	NM_001039933.1	215	cGg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290984	15290984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	128	885	1	ENST00000263388.2:c.3226C>T	p.Arg1076Cys	p.R1076C	ENST00000263388	NM_000435.2	1076	Cgt/Tgt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17937560	17937562	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	157	746	0	ENST00000458235.1:c.3365_3367del	p.Ser1122del	p.S1122del	ENST00000458235	NM_000215.3	1122	tCCTtt/ttt																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626736	12626736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149580968		P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	125	378	0	ENST00000251849.4:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000251849	NM_002880.3	518	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	65	177	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175219	112175219	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	63	160	0	ENST00000257430.4:c.3928A>T	p.Lys1310Ter	p.K1310*	ENST00000257430	NM_000038.5	1310	Aag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958189	2958189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	149	696	0	ENST00000396946.4:c.2543G>T	p.Arg848Leu	p.R848L	ENST00000396946	NM_032415.4	848	cGc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0045514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	42	320	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440957	56440957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35219874		P-0045514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	108	497	0	ENST00000407977.2:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000407977		127	cGg/cAg																																																																														
RARA	5914	MSKCC	GRCh37	17	38510683	38510683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	99	518	1	ENST00000254066.5:c.937G>A	p.Ala313Thr	p.A313T	ENST00000254066	NM_000964.3	313	Gcc/Acc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271228	153271228	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	20	203	0	ENST00000281708.4:c.550G>T	p.Gly184Ter	p.G184*	ENST00000281708	NM_033632.3	184	Gga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTT			P-0045514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	80	422	0	ENST00000269305.4:c.715_718dup	p.Ser240LysfsTer25	p.S240Kfs*25	ENST00000269305	NM_001126112.2	240	agt/aAACAgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	17	479	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	32	299	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0045582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	19	299	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575194	48575194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	10	247	0	ENST00000342988.3:c.388C>T	p.Pro130Ser	p.P130S	ENST00000342988	NM_005359.5	130	Cca/Tca																																																																														
CIC	23152	MSKCC	GRCh37	19	42794917	42794917	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199751904		P-0045582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	37	593	0	ENST00000575354.2:c.1997G>A	p.Arg666His	p.R666H	ENST00000575354	NM_015125.3	666	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0045582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	54	505	0	ENST00000269305.4:c.559+2T>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	56	175	2	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	274	470	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448570	89448570	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	111	357	0	ENST00000336596.2:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000336596	NM_005233.5	512	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	45	158	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195475	102195475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	67	305	0	ENST00000263464.3:c.235G>C	p.Gly79Arg	p.G79R	ENST00000263464	NM_001165.4	79	Gga/Cga																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675215	30675215	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	112	416	0	ENST00000376406.3:c.3030G>C	p.Lys1010Asn	p.K1010N	ENST00000376406	NM_014641.2	1010	aaG/aaC																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956983	2956983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	98	424	0	ENST00000396946.4:c.2644G>A	p.Asp882Asn	p.D882N	ENST00000396946	NM_032415.4	882	Gac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	62	240	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	273	555	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212230	5212230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367918810		P-0045943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	100	626	0	ENST00000357368.4:c.4801G>A	p.Val1601Ile	p.V1601I	ENST00000357368	NM_002850.3	1601	Gtc/Atc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711275	114711276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	182	282	0	ENST00000543371.1:c.290_291insT	p.Pro98AlafsTer47	p.P98Afs*47	ENST00000543371	NM_001198531.1	97	ggg/ggTg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511206	148511206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	42	399	1	ENST00000320356.2:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000320356	NM_004456.4	566	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	115	241	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CBL	867	MSKCC	GRCh37	11	119156088	119156088	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187952822		P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	212	521	0	ENST00000264033.4:c.1753C>T	p.Arg585Cys	p.R585C	ENST00000264033	NM_005188.3	585	Cgc/Tgc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	157	361	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134977949	134977949	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56186270		P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	141	361	0	ENST00000398015.3:c.2942C>T	p.Thr981Met	p.T981M	ENST00000398015	NM_004441.4	981	aCg/aTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671684	30671684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	209	544	0	ENST00000376406.3:c.5276G>A	p.Gly1759Glu	p.G1759E	ENST00000376406	NM_014641.2	1759	gGa/gAa																																																																														
SMO	6608	MSKCC	GRCh37	7	128845102	128845102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	278	569	0	ENST00000249373.3:c.596G>A	p.Arg199Gln	p.R199Q	ENST00000249373	NM_005631.4	199	cGg/cAg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434644	110434644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	188	499	0	ENST00000375856.3:c.3757T>C	p.Tyr1253His	p.Y1253H	ENST00000375856	NM_003749.2	1253	Tac/Cac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831156	72831156	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	24	374	0	ENST00000268489.5:c.5425C>G	p.Leu1809Val	p.L1809V	ENST00000268489	NM_006885.3	1809	Ctt/Gtt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131925343	131925344	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	30	106	1	ENST00000265335.6:c.1266_1267delinsAT	p.Thr423Ser	p.T423S	ENST00000265335		422	gaGAct/gaATct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969123	93969123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	104	257	0	ENST00000369303.4:c.1873G>T	p.Ala625Ser	p.A625S	ENST00000369303	NM_004440.3	625	Gcc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578181	7578181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	214	649	1	ENST00000269305.4:c.668C>T	p.Pro223Leu	p.P223L	ENST00000269305	NM_001126112.2	223	cCt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0046055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	329	1061	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	127	230	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88727513	88727513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	159	602	0	ENST00000360948.2:c.266G>A	p.Arg89His	p.R89H	ENST00000360948	NM_001012338.2	89	cGc/cAc																																																																														
BCL6	604	MSKCC	GRCh37	3	187440334	187440334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	76	573	0	ENST00000232014.4:c.2033G>A	p.Arg678His	p.R678H	ENST00000232014	NM_001130845.1	678	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	286	386	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175346	112175356	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAATTTTCT	TTGAATTTTCT	-			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	93	128	0	ENST00000257430.4:c.4056_4066del	p.Glu1353ArgfsTer18	p.E1353Rfs*18	ENST00000257430	NM_000038.5	1352	gTTGAATTTTCT/g																																																																														
MED12	9968	MSKCC	GRCh37	X	70343060	70343060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	270	286	0	ENST00000374080.3:c.1601C>T	p.Ala534Val	p.A534V	ENST00000374080		534	gCg/gTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983288	15983288	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	143	227	0	ENST00000268712.3:c.3491C>G	p.Ser1164Cys	p.S1164C	ENST00000268712	NM_006311.3	1164	tCt/tGt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117948	70117948	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	172	269	0	ENST00000245479.2:c.416T>A	p.Leu139Gln	p.L139Q	ENST00000245479	NM_000346.3	139	cTg/cAg																																																																														
TET2	54790	MSKCC	GRCh37	4	106157303	106157303	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	26	167	0	ENST00000380013.4:c.2204G>C	p.Ser735Thr	p.S735T	ENST00000380013	NM_001127208.2	735	aGt/aCt																																																																														
NBN	4683	MSKCC	GRCh37	8	90993026	90993026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	62	248	0	ENST00000265433.3:c.416C>T	p.Thr139Ile	p.T139I	ENST00000265433	NM_002485.4	139	aCt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	102	551	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	80	350	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	147	789	3	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	97	259	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	129	711	1	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030613	48030613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	73	418	0	ENST00000234420.5:c.3227G>A	p.Arg1076His	p.R1076H	ENST00000234420	NM_000179.2	1076	cGc/cAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98248030	98248030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	51	477	1	ENST00000331920.6:c.521C>T	p.Ala174Val	p.A174V	ENST00000331920	NM_000264.3	174	gCg/gTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55602667	55602667	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	60	208	0	ENST00000288135.5:c.2488C>T	p.Arg830Ter	p.R830*	ENST00000288135	NM_000222.2	830	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032029	10032029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	203	552	2	ENST00000330684.3:c.794C>T	p.Thr265Met	p.T265M	ENST00000330684	NM_001134407.1	265	aCg/aTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41572450	41572450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	142	782	0	ENST00000263253.7:c.4979C>T	p.Thr1660Met	p.T1660M	ENST00000263253	NM_001429.3	1660	aCg/aTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391075	89391075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	87	525	0	ENST00000336596.2:c.1141C>T	p.Arg381Cys	p.R381C	ENST00000336596	NM_005233.5	381	Cgc/Tgc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867304	45867304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	70	778	0	ENST00000391945.4:c.889G>A	p.Ala297Thr	p.A297T	ENST00000391945	NM_000400.3	297	Gcc/Acc																																																																														
TEK	7010	MSKCC	GRCh37	9	27158132	27158132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	60	333	0	ENST00000380036.4:c.356G>A	p.Arg119His	p.R119H	ENST00000380036	NM_000459.3	119	cGt/cAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706974	117706974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	39	411	1	ENST00000368508.3:c.2176G>A	p.Val726Ile	p.V726I	ENST00000368508	NM_002944.2	726	Gtt/Att																																																																														
MPL	4352	MSKCC	GRCh37	1	43804304	43804304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	98	536	0	ENST00000372470.3:c.304C>T	p.Arg102Cys	p.R102C	ENST00000372470	NM_005373.2	102	Cgt/Tgt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982157	201982157	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	112	697	1	ENST00000359651.3:c.684del	p.Ser229AlafsTer25	p.S229Afs*25	ENST00000359651		227	ttC/tt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724632	162724632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	50	383	0	ENST00000367921.3:c.404G>A	p.Arg135His	p.R135H	ENST00000367921	NM_006182.2	135	cGt/cAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	53	319	0	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435253	110435253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	70	352	1	ENST00000375856.3:c.3148G>A	p.Val1050Ile	p.V1050I	ENST00000375856	NM_003749.2	1050	Gtt/Att																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647400	3647400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	97	652	2	ENST00000294008.3:c.1663G>A	p.Val555Met	p.V555M	ENST00000294008	NM_032444.2	555	Gtg/Atg																																																																														
NF1	4763	MSKCC	GRCh37	17	29592354	29592354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	60	367	0	ENST00000358273.4:c.4832G>A	p.Arg1611Gln	p.R1611Q	ENST00000358273	NM_001042492.2	1611	cGg/cAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819345	3819345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	65	480	0	ENST00000262367.5:c.2890G>A	p.Ala964Thr	p.A964T	ENST00000262367	NM_004380.2	964	Gca/Aca																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52723074	52723074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	100	533	0	ENST00000322088.6:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000322088	NM_014225.5	420	cGg/cAg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209366	98209366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	92	652	0	ENST00000331920.6:c.4172G>A	p.Arg1391Gln	p.R1391Q	ENST00000331920	NM_000264.3	1391	cGg/cAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11264751	11264751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	101	590	0	ENST00000361445.4:c.3811G>A	p.Ala1271Thr	p.A1271T	ENST00000361445	NM_004958.3	1271	Gct/Act																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800444	32800444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	133	785	0	ENST00000374899.4:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000374899	NM_018833.2	368	cGg/cAg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104264060	104264060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	119	564	1	ENST00000369902.3:c.151C>A	p.Pro51Thr	p.P51T	ENST00000369902	NM_016169.3	51	Ccg/Acg																																																																														
SETD8	0	MSKCC	GRCh37	12	123875183	123875183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	55	359	0	ENST00000330479.4:c.139G>A	p.Val47Ile	p.V47I	ENST00000330479	NM_020382.3	47	Gta/Ata																																																																														
POLE	5426	MSKCC	GRCh37	12	133248871	133248871	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	95	578	0	ENST00000320574.5:c.1724A>G	p.Glu575Gly	p.E575G	ENST00000320574	NM_006231.2	575	gAg/gGg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435697	110435697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	52	429	0	ENST00000375856.3:c.2704C>T	p.Pro902Ser	p.P902S	ENST00000375856	NM_003749.2	902	Ccc/Tcc																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873741	35873741	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	102	495	0	ENST00000216797.5:c.110T>C	p.Met37Thr	p.M37T	ENST00000216797	NM_020529.2	37	aTg/aCg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671741	67671741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	38	572	0	ENST00000264010.4:c.2150C>T	p.Thr717Met	p.T717M	ENST00000264010	NM_006565.3	717	aCg/aTg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368266	45368266	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	88	341	0	ENST00000262160.6:c.1336C>A	p.Leu446Ile	p.L446I	ENST00000262160	NM_005901.5	446	Cta/Ata																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661674	227661674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	81	671	0	ENST00000305123.5:c.1781G>A	p.Arg594His	p.R594H	ENST00000305123	NM_005544.2	594	cGt/cAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478746	57478746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	64	313	0	ENST00000371085.3:c.332G>T	p.Ser111Ile	p.S111I	ENST00000371085	NM_000516.4	111	aGc/aTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267003	41267003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	85	371	0	ENST00000349496.5:c.674G>A	p.Arg225His	p.R225H	ENST00000349496	NM_001904.3	225	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937482	178937482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	104	363	0	ENST00000263967.3:c.1870A>G	p.Thr624Ala	p.T624A	ENST00000263967	NM_006218.2	624	Aca/Gca																																																																														
MET	4233	MSKCC	GRCh37	7	116339730	116339730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	49	305	0	ENST00000397752.3:c.592G>T	p.Gly198Cys	p.G198C	ENST00000397752	NM_000245.2	198	Ggc/Tgc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117861248	117861249	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	24	298	0	ENST00000297338.2:c.1640dup	p.Asp548ArgfsTer26	p.D548Rfs*26	ENST00000297338	NM_006265.2	547	ggc/ggGc																																																																														
PAX5	5079	MSKCC	GRCh37	9	37002755	37002755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	64	511	1	ENST00000358127.4:c.494C>T	p.Thr165Met	p.T165M	ENST00000358127	NM_001280556.1	165	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	167	862	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273940	10273940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	159	1042	0	ENST00000330684.3:c.329C>T	p.Ala110Val	p.A110V	ENST00000330684	NM_001134407.1	110	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	73	405	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965572	93965572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	32	351	0	ENST00000369303.4:c.2356G>A	p.Asp786Asn	p.D786N	ENST00000369303	NM_004440.3	786	Gat/Aat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31449442	31449442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	87	426	1	ENST00000344624.3:c.2767C>T	p.Arg923Trp	p.R923W	ENST00000344624		923	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936077	178936085	+	inframe_deletion	In_Frame_Del	DEL	TCTCTGAAA	TCTCTGAAA	-			P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	154	447	0	ENST00000263967.3:c.1621_1629del	p.Ser541_Ile543del	p.S541_I543del	ENST00000263967	NM_006218.2	540	cTCTCTGAAAtc/ctc																																																																														
APC	324	MSKCC	GRCh37	5	112170856	112170883	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCACAGGTATATATAGAGTTTTATATT	ACCACAGGTATATATAGAGTTTTATATT	-			P-0046735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	65	405	0	ENST00000257430.4:c.1954_1958+23del		p.X652_splice	ENST00000257430	NM_000038.5	652																																																																															
TP53	7157	MSKCC	GRCh37	17	7577126	7577126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	98	524	0	ENST00000269305.4:c.812A>T	p.Glu271Val	p.E271V	ENST00000269305	NM_001126112.2	271	gAg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	21	302	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																														
HGF	3082	MSKCC	GRCh37	7	81358979	81358979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	28	431	0	ENST00000222390.5:c.982C>T	p.Arg328Cys	p.R328C	ENST00000222390	NM_000601.4	328	Cgt/Tgt																																																																														
PGR	5241	MSKCC	GRCh37	11	100999677	100999677	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	79	823	0	ENST00000325455.5:c.125C>A	p.Ser42Ter	p.S42*	ENST00000325455	NM_001202474.3	42	tCg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	148	819	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	256	687	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028835	47028835	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	259	438	0	ENST00000329236.7:c.139G>T	p.Glu47Ter	p.E47*	ENST00000329236	NM_001204466.1	47	Gag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372447	118372447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	111	443	0	ENST00000534358.1:c.6380G>A	p.Arg2127Gln	p.R2127Q	ENST00000534358	NM_005933.3	2127	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0047231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	36	530	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	230	1023	2	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112175351	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0047231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	51	252	0	ENST00000257430.4:c.4062_4063del	p.Ser1355PhefsTer19	p.S1355Ffs*19	ENST00000257430	NM_000038.5	1354	TTt/t																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628773	187628773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	152	721	0	ENST00000441802.2:c.2209A>G	p.Ile737Val	p.I737V	ENST00000441802	NM_005245.3	737	Att/Gtt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519732	176519732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	113	1055	0	ENST00000292408.4:c.1004C>T	p.Ala335Val	p.A335V	ENST00000292408	NM_213647.1	335	gCa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	236	500	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112173975	112173975	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	127	379	0	ENST00000257430.4:c.2684C>A	p.Ser895Ter	p.S895*	ENST00000257430	NM_000038.5	895	tCa/tAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	304	842	1	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941125	36941125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	285	858	1	ENST00000361632.4:c.214G>A	p.Gly72Arg	p.G72R	ENST00000361632		72	Ggg/Agg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928065	178928076	+	inframe_deletion	In_Frame_Del	DEL	TACCTCATGGAT	TACCTCATGGAT	-			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	103	591	0	ENST00000263967.3:c.1345_1356del	p.Pro449_Leu452del	p.P449_L452del	ENST00000263967	NM_006218.2	448	gTACCTCATGGATta/gta																																																																														
MGA	23269	MSKCC	GRCh37	15	42058228	42058228	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	85	308	0	ENST00000219905.7:c.7948C>T	p.Arg2650Ter	p.R2650*	ENST00000219905	NM_001164273.1	2650	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112157658	112157658	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	106	418	0	ENST00000257430.4:c.1378G>T	p.Glu460Ter	p.E460*	ENST00000257430	NM_000038.5	460	Gaa/Taa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176671268	176671268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	90	394	0	ENST00000439151.2:c.4375G>A	p.Gly1459Arg	p.G1459R	ENST00000439151	NM_022455.4	1459	Gga/Aga																																																																														
PREX2	80243	MSKCC	GRCh37	8	68989642	68989642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	189	519	0	ENST00000288368.4:c.1580G>A	p.Arg527His	p.R527H	ENST00000288368	NM_024870.2	527	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	157	781	6	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	167	433	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473647	67473647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	364	868	4	ENST00000327367.4:c.727C>T	p.Arg243Cys	p.R243C	ENST00000327367	NM_005902.3	243	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	393	921	2	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																														
APC	324	MSKCC	GRCh37	5	112175751	112175751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	191	356	0	ENST00000257430.4:c.4460del	p.Thr1487IlefsTer20	p.T1487Ifs*20	ENST00000257430	NM_000038.5	1487	aCt/at																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247344	153247344	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	162	377	0	ENST00000281708.4:c.1458G>A	p.Trp486Ter	p.W486*	ENST00000281708	NM_033632.3	486	tgG/tgA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860469	151860469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	67	839	1	ENST00000262189.6:c.10193G>A	p.Arg3398Gln	p.R3398Q	ENST00000262189	NM_170606.2	3398	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	50	300	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	31	320	2	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	46	808	0	ENST00000263121.7:c.1130G>T	p.Arg377Leu	p.R377L	ENST00000263121	NM_003073.3	377	cGt/cTt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99155420	99155420	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	38	431	0	ENST00000074304.5:c.646C>T	p.Arg216Ter	p.R216*	ENST00000074304	NM_001134224.1	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112176016	112176016	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	17	226	0	ENST00000257430.4:c.4725del	p.Glu1576LysfsTer74	p.E1576Kfs*74	ENST00000257430	NM_000038.5	1575	ctA/ct																																																																														
EP300	2033	MSKCC	GRCh37	22	41551118	41551118	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	25	434	1	ENST00000263253.7:c.3261+1G>A		p.X1087_splice	ENST00000263253	NM_001429.3	1087																																																																															
NUF2	83540	MSKCC	GRCh37	1	163306613	163306613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	31	332	0	ENST00000271452.3:c.410C>T	p.Thr137Met	p.T137M	ENST00000271452	NM_145697.2	137	aCg/aTg																																																																														
FH	2271	MSKCC	GRCh37	1	241663851	241663851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	33	290	0	ENST00000366560.3:c.1276G>C	p.Ala426Pro	p.A426P	ENST00000366560	NM_000143.3	426	Gct/Cct																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45391476	45391476	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	45	261	0	ENST00000262160.6:c.684A>C	p.Glu228Asp	p.E228D	ENST00000262160	NM_005901.5	228	gaA/gaC																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264428	46264428	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	31	295	0	ENST00000371998.3:c.1475T>A	p.Ile492Lys	p.I492K	ENST00000371998		492	aTa/aAa																																																																														
APC	324	MSKCC	GRCh37	5	112174929	112174935	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGCAG	CAAGCAG	-			P-0047485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	16	156	0	ENST00000257430.4:c.3638_3644del	p.Ser1213LeufsTer50	p.S1213Lfs*50	ENST00000257430	NM_000038.5	1213	tCAAGCAGt/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	20	507	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	860	1023	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	11964	866	7	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	37	207	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																																																														
RXRA	6256	MSKCC	GRCh37	9	137321073	137321073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	274	673	1	ENST00000481739.1:c.1030G>A	p.Ala344Thr	p.A344T	ENST00000481739	NM_002957.4	344	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106123	27106123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	205	481	0	ENST00000324856.7:c.5734G>A	p.Asp1912Asn	p.D1912N	ENST00000324856	NM_006015.4	1912	Gat/Aat																																																																														
ALK	238	MSKCC	GRCh37	2	30143063	30143063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	555	1041	1	ENST00000389048.3:c.463G>A	p.Val155Ile	p.V155I	ENST00000389048	NM_004304.4	155	Gtc/Atc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212652814	212652814	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	103	274	0	ENST00000342788.4:c.492A>C	p.Gln164His	p.Q164H	ENST00000342788	NM_005235.2	164	caA/caC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860365	151860365	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	141	416	0	ENST00000262189.6:c.10297C>T	p.Gln3433Ter	p.Q3433*	ENST00000262189	NM_170606.2	3433	Cag/Tag																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	277	650	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	113	507	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	76	555	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	116	614	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317878	8317878	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151311972		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	102	524	0	ENST00000356435.5:c.5735C>T	p.Thr1912Met	p.T1912M	ENST00000356435		1912	aCg/aTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271991	15271991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	145	793	0	ENST00000263388.2:c.6448C>T	p.Arg2150Cys	p.R2150C	ENST00000263388	NM_000435.2	2150	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	76	464	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PAX5	5079	MSKCC	GRCh37	9	36840607	36840607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	147	791	2	ENST00000358127.4:c.1126G>A	p.Ala376Thr	p.A376T	ENST00000358127	NM_001280556.1	376	Gcc/Acc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973547	15973547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143125039		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	80	477	0	ENST00000268712.3:c.4445G>A	p.Arg1482Gln	p.R1482Q	ENST00000268712	NM_006311.3	1482	cGg/cAg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	90	595	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
CDH1	999	MSKCC	GRCh37	16	68844127	68844127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	152	739	0	ENST00000261769.5:c.715G>A	p.Gly239Arg	p.G239R	ENST00000261769	NM_004360.3	239	Ggg/Agg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216091	7216091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	134	556	1	ENST00000380728.2:c.968G>A	p.Arg323Gln	p.R323Q	ENST00000380728		323	cGa/cAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346077	89346077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	19	123	0	ENST00000301030.4:c.6873G>T	p.Glu2291Asp	p.E2291D	ENST00000301030	NM_001256183.1	2291	gaG/gaT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	114	512	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924421	131924421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146370443		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	81	448	0	ENST00000265335.6:c.1094G>A	p.Arg365Gln	p.R365Q	ENST00000265335		365	cGa/cAa																																																																														
RET	5979	MSKCC	GRCh37	10	43596032	43596032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	174	845	1	ENST00000355710.3:c.199C>T	p.Arg67Cys	p.R67C	ENST00000355710	NM_020975.4	67	Cgc/Tgc																																																																														
JUN	3725	MSKCC	GRCh37	1	59248461	59248461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	152	635	3	ENST00000371222.2:c.282del	p.Thr95ProfsTer9	p.T95Pfs*9	ENST00000371222	NM_002228.3	94	ccC/cc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903763	114903763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	120	562	0	ENST00000543371.1:c.767C>T	p.Pro256Leu	p.P256L	ENST00000543371	NM_001198531.1	256	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576899	7576899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	154	857	0	ENST00000269305.4:c.947C>T	p.Pro316Leu	p.P316L	ENST00000269305	NM_001126112.2	316	cCc/cTc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955043	17955043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs199602590		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	151	865	1	ENST00000458235.1:c.184G>A	p.Gly62Ser	p.G62S	ENST00000458235	NM_000215.3	62	Ggc/Agc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	163	898	3	ENST00000171111.5:c.1238G>A	p.Arg413His	p.R413H	ENST00000171111	NM_203500.1	413	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106879	27106879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	116	753	2	ENST00000324856.7:c.6490C>T	p.Arg2164Trp	p.R2164W	ENST00000324856	NM_006015.4	2164	Cgg/Tgg																																																																														
CASP8	841	MSKCC	GRCh37	2	202150039	202150039	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	152	698	0	ENST00000358485.4:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000358485	NM_001080125.1	494	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2952993	2952993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	186	914	3	ENST00000396946.4:c.2947G>A	p.Val983Met	p.V983M	ENST00000396946	NM_032415.4	983	Gtg/Atg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198283258	198283258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	148	641	0	ENST00000335508.6:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000335508	NM_012433.2	157	cGa/cAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575065	48575065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	77	423	0	ENST00000342988.3:c.259C>T	p.Arg87Trp	p.R87W	ENST00000342988	NM_005359.5	87	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710593	117710593	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145765584		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	78	367	1	ENST00000368508.3:c.1679G>A	p.Arg560His	p.R560H	ENST00000368508	NM_002944.2	560	cGc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133236017	133236017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	160	732	2	ENST00000320574.5:c.3139G>A	p.Gly1047Arg	p.G1047R	ENST00000320574	NM_006231.2	1047	Ggg/Agg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641388	23641388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	200	1043	0	ENST00000261584.4:c.2087C>T	p.Thr696Met	p.T696M	ENST00000261584	NM_024675.3	696	aCg/aTg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275420	38275420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	172	880	1	ENST00000425967.3:c.1613G>A	p.Arg538His	p.R538H	ENST00000425967	NM_001174067.1	538	cGt/cAt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707624	176707624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	140	637	0	ENST00000439151.2:c.5681G>A	p.Arg1894His	p.R1894H	ENST00000439151	NM_022455.4	1894	cGt/cAt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784478	9784478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	82	451	0	ENST00000377346.4:c.2863C>T	p.Arg955Trp	p.R955W	ENST00000377346	NM_005026.3	955	Cgg/Tgg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18964097	18964097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	140	752	0	ENST00000262803.5:c.1094G>A	p.Arg365Gln	p.R365Q	ENST00000262803	NM_002911.3	365	cGg/cAg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658481	3658481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140876043		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	164	836	1	ENST00000294008.3:c.485C>T	p.Thr162Met	p.T162M	ENST00000294008	NM_032444.2	162	aCg/aTg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37665993	37665993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	83	443	0	ENST00000447079.4:c.2645G>A	p.Arg882Gln	p.R882Q	ENST00000447079	NM_015083.1	882	cGg/cAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603007	48603007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	70	354	0	ENST00000342988.3:c.1309-1G>T		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632669	3632669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	143	907	0	ENST00000294008.3:c.5179G>A	p.Ala1727Thr	p.A1727T	ENST00000294008	NM_032444.2	1727	Gca/Aca																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939140	36939140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	183	893	3	ENST00000361632.4:c.569G>A	p.Arg190His	p.R190H	ENST00000361632		190	cGc/cAc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141572621	141572621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	149	745	0	ENST00000220592.5:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000220592	NM_012154.3	150	cGg/cAg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625405	69625405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	170	940	1	ENST00000334134.2:c.388G>A	p.Ala130Thr	p.A130T	ENST00000334134	NM_005247.2	130	Gcc/Acc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99169415	99169415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	101	610	0	ENST00000074304.5:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000074304	NM_001134224.1	449	Gcc/Acc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681341	88681341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	47	279	2	ENST00000372037.3:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000372037	NM_004329.2	411	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7168022	7168022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	115	755	1	ENST00000302850.5:c.1567G>A	p.Asp523Asn	p.D523N	ENST00000302850	NM_000208.2	523	Gac/Aac																																																																														
SUFU	51684	MSKCC	GRCh37	10	104359302	104359302	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	116	600	1	ENST00000369902.3:c.1022+1G>A		p.X341_splice	ENST00000369902	NM_016169.3	341																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981297	201981297	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	209	853	0	ENST00000359651.3:c.376C>T	p.Arg126Ter	p.R126*	ENST00000359651		126	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107086	27107086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	112	653	0	ENST00000324856.7:c.6697C>T	p.Arg2233Trp	p.R2233W	ENST00000324856	NM_006015.4	2233	Cgg/Tgg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250353	39250353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	110	704	1	ENST00000402219.2:c.1216C>T	p.Arg406Trp	p.R406W	ENST00000402219	NM_005633.3	406	Cgg/Tgg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919881	50919881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	158	803	0	ENST00000440232.2:c.2968C>T	p.Arg990Cys	p.R990C	ENST00000440232	NM_002691.3	990	Cgc/Tgc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797891	45797891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840380		P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	185	856	0	ENST00000372115.3:c.838C>T	p.Arg280Cys	p.R280C	ENST00000372115	NM_001048171.1	280	Cgc/Tgc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227015	53227015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	171	871	1	ENST00000375401.3:c.2560C>T	p.Arg854Trp	p.R854W	ENST00000375401	NM_004187.3	854	Cgg/Tgg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119720928	119720928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	119	617	0	ENST00000316626.5:c.247G>A	p.Ala83Thr	p.A83T	ENST00000316626		83	Gcc/Acc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956977	2956977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	165	793	0	ENST00000396946.4:c.2650C>T	p.Arg884Trp	p.R884W	ENST00000396946	NM_032415.4	884	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829901	72829901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	157	870	1	ENST00000268489.5:c.6680G>A	p.Arg2227Gln	p.R2227Q	ENST00000268489	NM_006885.3	2227	cGg/cAg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2215893	2215893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	177	814	6	ENST00000326181.6:c.95C>T	p.Thr32Met	p.T32M	ENST00000326181	NM_032271.2	32	aCg/aTg																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64286793	64286793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	100	421	0	ENST00000370651.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000370651	NM_003463.4	3	cGa/cAa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615791	1615791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	139	824	2	ENST00000344749.5:c.1480G>A	p.Ala494Thr	p.A494T	ENST00000344749	NM_001136139.2	494	Gcc/Acc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288983	33288983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	146	656	0	ENST00000374542.5:c.569G>A	p.Arg190His	p.R190H	ENST00000374542	NM_001141970.1	190	cGt/cAt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028757	47028757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	169	853	1	ENST00000329236.7:c.61C>T	p.Arg21Cys	p.R21C	ENST00000329236	NM_001204466.1	21	Cgc/Tgc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246473	10246473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	165	888	2	ENST00000340748.4:c.4664G>A	p.Arg1555His	p.R1555H	ENST00000340748		1555	cGc/cAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120484287	120484287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	128	609	1	ENST00000256646.2:c.2843C>T	p.Thr948Ile	p.T948I	ENST00000256646	NM_024408.3	948	aCa/aTa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843677	156843677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	188	908	1	ENST00000524377.1:c.1103G>A	p.Gly368Asp	p.G368D	ENST00000524377	NM_002529.3	368	gGc/gAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903744	114903744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	155	641	1	ENST00000543371.1:c.748G>A	p.Val250Ile	p.V250I	ENST00000543371	NM_001198531.1	250	Gta/Ata																																																																														
PAK1	5058	MSKCC	GRCh37	11	77090950	77090950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	104	556	0	ENST00000356341.3:c.280G>T	p.Gly94Trp	p.G94W	ENST00000356341	NM_002576.4	94	Ggg/Tgg																																																																														
CCND2	894	MSKCC	GRCh37	12	4409080	4409080	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	111	537	2	ENST00000261254.3:c.775C>T	p.Gln259Ter	p.Q259*	ENST00000261254	NM_001759.3	259	Cag/Tag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120992	115120992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	136	632	0	ENST00000257566.3:c.14T>C	p.Met5Thr	p.M5T	ENST00000257566	NM_016569.3	5	aTg/aCg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28913358	28913358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	145	821	0	ENST00000282397.4:c.2435G>A	p.Arg812Gln	p.R812Q	ENST00000282397	NM_002019.4	812	cGg/cAg																																																																														
RB1	5925	MSKCC	GRCh37	13	48921999	48921999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	40	441	0	ENST00000267163.4:c.539C>T	p.Ser180Leu	p.S180L	ENST00000267163	NM_000321.2	180	tCg/tTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562482	95562482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	230	551	0	ENST00000343455.3:c.4775C>T	p.Pro1592Leu	p.P1592L	ENST00000343455	NM_177438.2	1592	cCg/cTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830168	72830168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	148	748	1	ENST00000268489.5:c.6413C>T	p.Pro2138Leu	p.P2138L	ENST00000268489	NM_006885.3	2138	cCa/cTa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11984816	11984816	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	104	600	0	ENST00000353533.5:c.362A>G	p.His121Arg	p.H121R	ENST00000353533	NM_003010.3	121	cAc/cGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29548920	29548920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	41	492	0	ENST00000358273.4:c.1694C>A	p.Ala565Asp	p.A565D	ENST00000358273	NM_001042492.2	565	gCt/gAt																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526448	66526448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	120	567	0	ENST00000358598.2:c.1004G>A	p.Arg335His	p.R335H	ENST00000358598	NM_212471.2	335	cGt/cAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290282	15290282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	190	862	1	ENST00000263388.2:c.3353A>G	p.Asn1118Ser	p.N1118S	ENST00000263388	NM_000435.2	1118	aAc/aGc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279603	18279603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	164	964	0	ENST00000222254.8:c.1876A>G	p.Lys626Glu	p.K626E	ENST00000222254	NM_005027.3	626	Aag/Gag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872232	45872232	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	160	858	0	ENST00000391945.4:c.202A>G	p.Thr68Ala	p.T68A	ENST00000391945	NM_000400.3	68	Acc/Gcc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912817	50912817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	166	856	1	ENST00000440232.2:c.2048G>A	p.Arg683His	p.R683H	ENST00000440232	NM_002691.3	683	cGc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCC			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	39	586	0	ENST00000234420.5:c.3259_3261dup	p.Pro1087dup	p.P1087dup	ENST00000234420	NM_000179.2	1087	acc/aCCCcc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661581	227661581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	171	874	0	ENST00000305123.5:c.1874G>T	p.Gly625Val	p.G625V	ENST00000305123	NM_005544.2	625	gGc/gTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41564807	41564807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	143	754	0	ENST00000263253.7:c.4108G>A	p.Asp1370Asn	p.D1370N	ENST00000263253	NM_001429.3	1370	Gac/Aac																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960002	134960002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	107	596	0	ENST00000398015.3:c.2359C>A	p.Pro787Thr	p.P787T	ENST00000398015	NM_004441.4	787	Cct/Act																																																																														
ATR	545	MSKCC	GRCh37	3	142268341	142268341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	39	389	0	ENST00000350721.4:c.3151C>T	p.Arg1051Cys	p.R1051C	ENST00000350721	NM_001184.3	1051	Cgt/Tgt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31468095	31468095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	170	724	1	ENST00000344624.3:c.2317G>A	p.Val773Ile	p.V773I	ENST00000344624		773	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112128194	112128194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	104	484	0	ENST00000257430.4:c.697C>T	p.Gln233Ter	p.Q233*	ENST00000257430	NM_000038.5	233	Cag/Tag																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032240	26032240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	71	391	0	ENST00000244661.2:c.49C>T	p.Pro17Ser	p.P17S	ENST00000244661	NM_003537.3	17	Cca/Tca																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839739	27839739	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	165	718	0	ENST00000328488.2:c.355A>G	p.Thr119Ala	p.T119A	ENST00000328488	NM_003533.2	119	Act/Gct																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805554	32805554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	229	910	0	ENST00000374899.4:c.457G>A	p.Val153Ile	p.V153I	ENST00000374899	NM_018833.2	153	Gtt/Att																																																																														
PARK2	0	MSKCC	GRCh37	6	161969953	161969953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	134	713	1	ENST00000366898.1:c.1016C>T	p.Ala339Val	p.A339V	ENST00000366898	NM_004562.2	339	gCg/gTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471080	8471080	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	69	381	0	ENST00000356435.5:c.3419A>G	p.Tyr1140Cys	p.Y1140C	ENST00000356435		1140	tAc/tGc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499806	8499807	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	114	611	1	ENST00000356435.5:c.2162_2163delinsGT	p.Glu721Gly	p.E721G	ENST00000356435		721	gAG/gGT																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98218682	98218682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	110	445	0	ENST00000331920.6:c.3182C>T	p.Ala1061Val	p.A1061V	ENST00000331920	NM_000264.3	1061	gCg/gTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98240363	98240363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	124	550	0	ENST00000331920.6:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000331920	NM_000264.3	441	Cgc/Tgc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128420055	128420055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	147	743	0	ENST00000265960.3:c.373G>A	p.Glu125Lys	p.E125K	ENST00000265960	NM_001006617.1	125	Gaa/Aaa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396517	139396517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	135	840	0	ENST00000277541.6:c.5408G>A	p.Gly1803Asp	p.G1803D	ENST00000277541	NM_017617.3	1803	gGt/gAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139440184	139440184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	30	98	0	ENST00000277541.6:c.55G>A	p.Ala19Thr	p.A19T	ENST00000277541	NM_017617.3	19	Gca/Aca																																																																														
STAG2	10735	MSKCC	GRCh37	X	123182895	123182895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	58	433	0	ENST00000218089.9:c.860C>T	p.Ala287Val	p.A287V	ENST00000218089	NM_001042749.1	287	gCa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	252	732	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	123	334	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956958	2956958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	222	544	0	ENST00000396946.4:c.2669C>T	p.Ser890Leu	p.S890L	ENST00000396946	NM_032415.4	890	tCg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112170652	112170652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	68	222	0	ENST00000257430.4:c.1748C>A	p.Ser583Ter	p.S583*	ENST00000257430	NM_000038.5	583	tCa/tAa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434116	121434116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	229	605	0	ENST00000257555.6:c.1007G>T	p.Ser336Ile	p.S336I	ENST00000257555		336	aGc/aTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29654757	29654757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	98	262	0	ENST00000358273.4:c.5509G>T	p.Asp1837Tyr	p.D1837Y	ENST00000358273	NM_001042492.2	1837	Gac/Tac																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266661	41266661	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	117	317	0	ENST00000349496.5:c.458T>G	p.Ile153Ser	p.I153S	ENST00000349496	NM_001904.3	153	aTc/aGc																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99808303	99808303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	47	260	0	ENST00000280892.6:c.386G>T	p.Arg129Leu	p.R129L	ENST00000280892	NM_001130678.1	129	cGg/cTg																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349256	11349256	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047833-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	78	267	0	ENST00000332029.2:c.80C>G	p.Ser27Cys	p.S27C	ENST00000332029	NM_003745.1	27	tCc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	89	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	51	189	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	126	232	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	204	475	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023853	27023853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	47	223	0	ENST00000324856.7:c.959C>T	p.Pro320Leu	p.P320L	ENST00000324856	NM_006015.4	320	cCc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112175834	112175834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	130	218	0	ENST00000257430.4:c.4543T>C	p.Phe1515Leu	p.F1515L	ENST00000257430	NM_000038.5	1515	Ttt/Ctt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041358	47041358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	207	559	0	ENST00000329236.7:c.1468G>A	p.Asp490Asn	p.D490N	ENST00000329236	NM_001204466.1	490	Gac/Aac																																																																														
MED12	9968	MSKCC	GRCh37	X	70344949	70344949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs192331892		P-0047888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	194	502	1	ENST00000374080.3:c.2179G>A	p.Asp727Asn	p.D727N	ENST00000374080		727	Gac/Aac																																																																														
NUP93	9688	MSKCC	GRCh37	16	56852646	56852646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	173	379	0	ENST00000308159.5:c.560G>A	p.Arg187Gln	p.R187Q	ENST00000308159	NM_014669.4	187	cGg/cAg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118890	70118890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	262	806	0	ENST00000245479.2:c.462C>A	p.Phe154Leu	p.F154L	ENST00000245479	NM_000346.3	154	ttC/ttA																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	343	453	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	125	441	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245533	153245533	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	97	314	0	ENST00000281708.4:c.1658A>C	p.His553Pro	p.H553P	ENST00000281708	NM_033632.3	553	cAt/cCt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6042163	6042163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	214	544	0	ENST00000265849.7:c.458G>A	p.Arg153Lys	p.R153K	ENST00000265849	NM_000535.5	153	aGa/aAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	66	294	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ARAF	369	MSKCC	GRCh37	X	47428124	47428124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	212	773	2	ENST00000377045.4:c.1084C>T	p.Arg362Ter	p.R362*	ENST00000377045	NM_001654.4	362	Cga/Tga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180039610	180039610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs202140363		P-0047972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	249	672	1	ENST00000261937.6:c.3433C>T	p.Arg1145Cys	p.R1145C	ENST00000261937	NM_182925.4	1145	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	93	200	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37646980	37646981	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACC			P-0047972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	89	293	0	ENST00000447079.4:c.2104_2106dup	p.Pro702dup	p.P702dup	ENST00000447079	NM_015083.1	702	aga/agACCa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386408	31386408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1277	177	656	1	ENST00000328111.2:c.1633C>T	p.Arg545Cys	p.R545C	ENST00000328111	NM_006892.3	545	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112162896	112162896	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0047972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	86	272	0	ENST00000257430.4:c.1500T>A	p.Tyr500Ter	p.Y500*	ENST00000257430	NM_000038.5	500	taT/taA																																																																														
SYK	6850	MSKCC	GRCh37	9	93607869	93607869	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	73	284	0	ENST00000375746.1:c.571A>T	p.Lys191Ter	p.K191*	ENST00000375746	NM_001174167.1	191	Aag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	29	241	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	68	465	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223093	5223093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	62	1120	1	ENST00000357368.4:c.2710C>T	p.Arg904Trp	p.R904W	ENST00000357368	NM_002850.3	904	Cgg/Tgg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374929	45374929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	100	509	0	ENST00000262160.6:c.914C>T	p.Pro305Leu	p.P305L	ENST00000262160	NM_005901.5	305	cCa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	89	730	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
APC	324	MSKCC	GRCh37	5	112175433	112175434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	33	280	0	ENST00000257430.4:c.4142_4143insT	p.Leu1382ThrfsTer4	p.L1382Tfs*4	ENST00000257430	NM_000038.5	1381	cca/ccTa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929562	44929563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	78	446	0	ENST00000377967.4:c.2664dup	p.Ile889HisfsTer17	p.I889Hfs*17	ENST00000377967	NM_021140.2	888	tcc/tCcc																																																																														
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	37	169	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411444	63411444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	49	352	0	ENST00000330258.3:c.1723C>T	p.Arg575Trp	p.R575W	ENST00000330258	NM_152424.3	575	Cgg/Tgg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	124	473	0	ENST00000361445.4:c.7280T>G	p.Leu2427Arg	p.L2427R	ENST00000361445	NM_004958.3	2427	cTg/cGg																																																																														
PARK2	0	MSKCC	GRCh37	6	162206908	162206908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	34	299	0	ENST00000366898.1:c.767G>A	p.Arg256His	p.R256H	ENST00000366898	NM_004562.2	256	cGc/cAc																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226253381	226253381	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	14	191	0	ENST00000366813.1:c.153A>T	p.Glu51Asp	p.E51D	ENST00000366813		51	gaA/gaT																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118995	70118995	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	97	831	0	ENST00000245479.2:c.567del	p.Glu190ArgfsTer29	p.E190Rfs*29	ENST00000245479	NM_000346.3	189	gcA/gc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256658	19256658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	103	840	1	ENST00000162023.5:c.1055G>A	p.Arg352Gln	p.R352Q	ENST00000162023		352	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905573	50905573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	154	1153	1	ENST00000440232.2:c.701C>T	p.Ala234Val	p.A234V	ENST00000440232	NM_002691.3	234	gCa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	293	661	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	176	456	1	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175349	112175353	+	frameshift_variant	Frame_Shift_Del	DEL	AATTT	AATTT	-			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	36	255	0	ENST00000257430.4:c.4058_4062del	p.Glu1353ValfsTer20	p.E1353Vfs*20	ENST00000257430	NM_000038.5	1353	gAATTT/g																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508673	106508673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	204	547	1	ENST00000359195.3:c.667G>A	p.Val223Ile	p.V223I	ENST00000359195	NM_002649.2	223	Gtc/Atc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862766	9862766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	348	533	1	ENST00000330684.3:c.2537G>A	p.Arg846His	p.R846H	ENST00000330684	NM_001134407.1	846	cGc/cAc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56792500	56792500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	225	463	0	ENST00000308159.5:c.230G>A	p.Arg77Gln	p.R77Q	ENST00000308159	NM_014669.4	77	cGa/cAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61720122	61720122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	110	431	0	ENST00000401558.2:c.1312G>A	p.Gly438Arg	p.G438R	ENST00000401558	NM_003400.3	438	Gga/Aga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32171570	32171570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	242	666	0	ENST00000375023.3:c.3208G>A	p.Gly1070Ser	p.G1070S	ENST00000375023	NM_004557.3	1070	Ggt/Agt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741742	145741742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	97	771	0	ENST00000428558.2:c.761C>T	p.Pro254Leu	p.P254L	ENST00000428558	NM_004260.3	254	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	341	543	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0048170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	40	192	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	86	225	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925329	114925329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	166	431	0	ENST00000543371.1:c.1407C>G	p.Cys469Trp	p.C469W	ENST00000543371	NM_001198531.1	469	tgC/tgG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	267	666	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1962801	1962801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	204	448	0	ENST00000382891.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000382891	NM_133335.3	1099	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112116523	112116523	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	60	256	0	ENST00000257430.4:c.568G>T	p.Glu190Ter	p.E190*	ENST00000257430	NM_000038.5	190	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	77	261	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	110	355	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056053	26056067	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGGCTTAGCGG	CCTTGGGCTTAGCGG	-	rs756916945		P-0048230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	120	416	0	ENST00000343677.2:c.590_604del	p.Ala197_Lys201del	p.A197_K201del	ENST00000343677	NM_005319.3	197	gCCGCTAAGCCCAAGGtt/gtt																																																																														
APC	324	MSKCC	GRCh37	5	112175184	112175194	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCTAATACC	CTGCTAATACC	-			P-0048230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	67	196	0	ENST00000257430.4:c.3897_3907del	p.Thr1301SerfsTer10	p.T1301Sfs*10	ENST00000257430	NM_000038.5	1298	tCTGCTAATACC/t																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119857	70119857	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	283	843	0	ENST00000245479.2:c.859G>T	p.Glu287Ter	p.E287*	ENST00000245479	NM_000346.3	287	Gag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	70	234	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244098	5244098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs73545312		P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	403	885	0	ENST00000357368.4:c.1384G>A	p.Val462Ile	p.V462I	ENST00000357368	NM_002850.3	462	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	159	237	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	48	142	0	ENST00000371953.3:c.1027-1G>A		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	67	354	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7976192	7976192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	107	691	0	ENST00000319144.4:c.2003G>A	p.Arg668His	p.R668H	ENST00000319144	NM_001139.2	668	cGc/cAc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489870	40489871	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	124	456	0	ENST00000264657.5:c.555dup	p.Gln186AlafsTer35	p.Q186Afs*35	ENST00000264657	NM_139276.2	185	-/G																																																																														
CASP8	841	MSKCC	GRCh37	2	202141548	202141548	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	77	296	0	ENST00000358485.4:c.838-2A>G		p.X280_splice	ENST00000358485	NM_001080125.1	280																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180390	38180390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	237	791	0	ENST00000396334.3:c.238C>T	p.Gln80Ter	p.Q80*	ENST00000396334	NM_002468.4	80	Caa/Taa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	122	273	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	298	605	0	ENST00000269305.4:c.464C>A	p.Thr155Asn	p.T155N	ENST00000269305	NM_001126112.2	155	aCc/aAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575200	48575200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	113	198	0	ENST00000342988.3:c.394C>T	p.His132Tyr	p.H132Y	ENST00000342988	NM_005359.5	132	Cac/Tac																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450267	50450267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	212	439	0	ENST00000331340.3:c.451G>A	p.Gly151Arg	p.G151R	ENST00000331340	NM_006060.4	151	Ggg/Agg																																																																														
APC	324	MSKCC	GRCh37	5	112155043	112155043	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0048626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	192	283	0	ENST00000257430.4:c.1312+2T>C		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																															
PMS1	5378	MSKCC	GRCh37	2	190718969	190718969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	22	165	0	ENST00000441310.2:c.971C>G	p.Ser324Cys	p.S324C	ENST00000441310	NM_000534.4	324	tCt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	136	469	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
AR	367	MSKCC	GRCh37	X	66765655	66765655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	205	761	0	ENST00000374690.3:c.667G>A	p.Asp223Asn	p.D223N	ENST00000374690	NM_000044.3	223	Gac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928108	+	inframe_deletion	In_Frame_Del	DEL	GAAGATTTGCTGAACCCTATTGGTGTTACT	GAAGATTTGCTGAACCCTATTGGTGTTACT	-			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	56	435	0	ENST00000263967.3:c.1358_1387del	p.Glu453_Thr462del	p.E453_T462del	ENST00000263967	NM_006218.2	453	GAAGATTTGCTGAACCCTATTGGTGTTACT/-																																																																														
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	60	281	0	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																																																														
MGA	23269	MSKCC	GRCh37	15	42000019	42000019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	109	517	0	ENST00000219905.7:c.2282C>T	p.Pro761Leu	p.P761L	ENST00000219905	NM_001164273.1	761	cCt/cTt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643348	52643348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	80	408	1	ENST00000394830.3:c.2548C>T	p.Arg850Ter	p.R850*	ENST00000394830	NM_018313.4	850	Cga/Tga																																																																														
TET2	54790	MSKCC	GRCh37	4	106194031	106194031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	66	283	0	ENST00000380013.4:c.4493G>A	p.Arg1498His	p.R1498H	ENST00000380013	NM_001127208.2	1498	cGt/cAt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061346	38061346	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	187	650	0	ENST00000250448.2:c.643C>T	p.Gln215Ter	p.Q215*	ENST00000250448	NM_004496.3	215	Cag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117755	70117756	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	55	752	0	ENST00000245479.2:c.224dup	p.Ala76GlyfsTer176	p.A76Gfs*176	ENST00000245479	NM_000346.3	75	gag/gAag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120050	70120051	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	10	16	0	ENST00000245479.2:c.1054dup	p.Ala352GlyfsTer226	p.A352Gfs*226	ENST00000245479	NM_000346.3	351	cag/caGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	38	366	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	343	280	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	256	618	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672317	86672317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	15	349	0	ENST00000274376.6:c.2119C>T	p.Arg707Cys	p.R707C	ENST00000274376	NM_002890.2	707	Cgt/Tgt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678458	88678458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	118	647	0	ENST00000360948.2:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000360948	NM_001012338.2	360	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298023	15298023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	390	856	0	ENST00000263388.2:c.1733G>A	p.Arg578His	p.R578H	ENST00000263388	NM_000435.2	578	cGc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133233987	133233987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	240	594	0	ENST00000320574.5:c.3407G>A	p.Arg1136Gln	p.R1136Q	ENST00000320574	NM_006231.2	1136	cGg/cAg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457247	67457247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	324	703	2	ENST00000327367.4:c.221G>A	p.Arg74Gln	p.R74Q	ENST00000327367	NM_005902.3	74	cGg/cAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575161	48575161	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	16	236	0	ENST00000342988.3:c.357del	p.Phe119LeufsTer3	p.F119Lfs*3	ENST00000342988	NM_005359.5	119	Ttt/tt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880972	134880972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	144	586	0	ENST00000398015.3:c.1535C>A	p.Ala512Asp	p.A512D	ENST00000398015	NM_004441.4	512	gCt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	194	511	1	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820528	44820528	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	29	230	0	ENST00000377967.4:c.226-1G>A		p.X76_splice	ENST00000377967	NM_021140.2	76																																																																															
ETV6	2120	MSKCC	GRCh37	12	12043876	12043876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0048971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	99	226	0	ENST00000396373.4:c.1255T>A	p.Phe419Ile	p.F419I	ENST00000396373	NM_001987.4	419	Ttt/Att																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883974	37883974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	175	489	3	ENST00000269571.5:c.3445C>G	p.Pro1149Ala	p.P1149A	ENST00000269571		1149	Ccc/Gcc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165983	47165983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	44	295	0	ENST00000409792.3:c.143G>T	p.Gly48Val	p.G48V	ENST00000409792	NM_014159.6	48	gGt/gTt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56111534	56111534	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	14	50	0	ENST00000399503.3:c.136del	p.Glu46ArgfsTer139	p.E46Rfs*139	ENST00000399503	NM_005921.1	45	cGg/cg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55224317	55224317	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2327	128	319	1	ENST00000275493.2:c.1098T>A	p.Ser366Arg	p.S366R	ENST00000275493	NM_005228.3	366	agT/agA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393192	139393456	+	splice_donor_variant,splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGCCCGCATCATGCGGGTGGGGCCCACATGCGGGCCCAGCGACCCTCGAGACCCTGTGGGTCAGGCCCTTGTGTCCCTGCGCCCCGTGGGTTTGGCCCTCACTTCTCTGTGGATTCAGCCCTCACGTCTCCCCTGGCATCCCAGCCTCGCGCTCACCCTGTTGTTCTGCATATCTTTGTTAGCCCCGTTCTTCAGGAGCACAACTGCGGCATCCACATTGTTCACGGCGGCGGCCCAGTGCAGGGCGGACTTGCCTGCGTGA	AGGTGCCCGCATCATGCGGGTGGGGCCCACATGCGGGCCCAGCGACCCTCGAGACCCTGTGGGTCAGGCCCTTGTGTCCCTGCGCCCCGTGGGTTTGGCCCTCACTTCTCTGTGGATTCAGCCCTCACGTCTCCCCTGGCATCCCAGCCTCGCGCTCACCCTGTTGTTCTGCATATCTTTGTTAGCCCCGTTCTTCAGGAGCACAACTGCGGCATCCACATTGTTCACGGCGGCGGCCCAGTGCAGGGCGGACTTGCCTGCGTGA	-			P-0048971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	40	96	0	ENST00000277541.6:c.6083-8_6180+159del		p.X2028_splice	ENST00000277541	NM_017617.3	2028																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	87	355	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	50	208	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	173	403	0	ENST00000269305.4:c.681dup	p.Asp228Ter	p.D228*	ENST00000269305	NM_001126112.2	227	-/T																																																																														
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	66	164	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175754	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	61	234	0	ENST00000257430.4:c.4464_4465del	p.Leu1488PhefsTer25	p.L1488Ffs*25	ENST00000257430	NM_000038.5	1488	tTA/t																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719941	18719941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	41	338	0	ENST00000266497.5:c.3838C>A	p.Leu1280Ile	p.L1280I	ENST00000266497		1280	Cta/Ata																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119692	70119692	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	369	529	0	ENST00000245479.2:c.694C>T	p.Gln232Ter	p.Q232*	ENST00000245479	NM_000346.3	232	Cag/Tag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026833	71026857	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGCGTTCTTATAAAATTCTTGG	TTCTGCGTTCTTATAAAATTCTTGG	-			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	27	186	0	ENST00000318789.4:c.1365_1389del	p.Asn455LysfsTer11	p.N455Kfs*11	ENST00000318789	NM_032682.5	455	aaCCAAGAATTTTATAAGAACGCAGAA/aa																																																																														
TEK	7010	MSKCC	GRCh37	9	27168562	27168563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	61	376	0	ENST00000380036.4:c.434_435insC	p.Lys145AsnfsTer5	p.K145Nfs*5	ENST00000380036	NM_000459.3	145	aag/aaCg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	40	356	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	85	404	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	173	667	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	114	315	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																														
APC	324	MSKCC	GRCh37	5	112174092	112174093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	80	283	0	ENST00000257430.4:c.2803dup	p.Tyr935LeufsTer5	p.Y935Lfs*5	ENST00000257430	NM_000038.5	934	act/acTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	97	281	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619835	1619835	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	240	867	2	ENST00000344749.5:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000344749	NM_001136139.2	371	Cga/Tga																																																																														
CYLD	1540	MSKCC	GRCh37	16	50827519	50827519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	64	449	1	ENST00000398568.2:c.2404G>A	p.Asp802Asn	p.D802N	ENST00000398568	NM_001042412.1	802	Gat/Aat																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435987	110435987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	228	972	0	ENST00000375856.3:c.2414C>A	p.Ser805Tyr	p.S805Y	ENST00000375856	NM_003749.2	805	tCc/tAc																																																																														
B2M	567	MSKCC	GRCh37	15	45003757	45003866	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCAGCGTGAGTCTCTCCTACCCTCCCGCTCTGGTCCTTCCTCTCCCGCTCTGCACCCTCT	GTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCAGCGTGAGTCTCTCCTACCCTCCCGCTCTGGTCCTTCCTCTCCCGCTCTGCACCCTCT	-			P-0049069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	32	573	0	ENST00000558401.1:c.19_67+61del		p.X7_splice	ENST00000558401	NM_004048.2	7																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0049078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	52	608	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864117	57864117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	123	737	0	ENST00000228682.2:c.1594C>T	p.Arg532Cys	p.R532C	ENST00000228682	NM_005269.2	532	Cgc/Tgc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640428	3640428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	101	933	1	ENST00000294008.3:c.3211C>A	p.Pro1071Thr	p.P1071T	ENST00000294008	NM_032444.2	1071	Cca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	714	898	2	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	327	364	1	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275649	41275649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	154	486	0	ENST00000349496.5:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000349496	NM_001904.3	515	cGa/cAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277899	41277901	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	312	475	0	ENST00000349496.5:c.1864_1866del	p.Ala622del	p.A622del	ENST00000349496	NM_001904.3	621	ctTGCt/ctt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143029298	143029298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	88	314	0	ENST00000262992.4:c.2322C>A	p.Phe774Leu	p.F774L	ENST00000262992	NM_001101669.1	774	ttC/ttA																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523717	148523717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	84	274	0	ENST00000320356.2:c.736G>C	p.Glu246Gln	p.E246Q	ENST00000320356	NM_004456.4	246	Gaa/Caa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932264	39932264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	54	916	1	ENST00000378444.4:c.2335G>T	p.Val779Phe	p.V779F	ENST00000378444	NM_001123385.1	779	Gtc/Ttc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	97	369	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	66	162	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	57	605	0	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	31	146	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	75	219	1	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	131	638	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	104	330	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	81	236	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	110	585	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	110	585	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	40	200	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	182	727	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	26	308	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	47	514	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	178	747	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	244	426	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	50	137	0	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	60	465	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89857881	89857881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	70	618	4	ENST00000389301.3:c.1289C>T	p.Ala430Val	p.A430V	ENST00000389301	NM_000135.2	430	gCg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	110	585	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	105	313	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957465	175957465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	98	354	1	ENST00000367669.3:c.1931del	p.Asn644ThrfsTer3	p.N644Tfs*3	ENST00000367669	NM_022457.5	644	aAc/ac																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910405	29910405	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	117	784	0	ENST00000376809.5:c.73+2T>C		p.X25_splice	ENST00000376809	NM_002116.7	25																																																																															
MSH2	4436	MSKCC	GRCh37	2	47657020	47657020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	87	290	2	ENST00000233146.2:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000233146	NM_000251.2	406	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306553	41306553	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	112	518	1	ENST00000373198.4:c.1106del	p.Gly369ValfsTer28	p.G369Vfs*28	ENST00000373198	NM_133170.3	369	gGt/gt																																																																														
ALK	238	MSKCC	GRCh37	2	29446388	29446388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	197	769	1	ENST00000389048.3:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000389048	NM_004304.4	1060	cGc/cAc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	120	800	0	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913436	32913436	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	93	291	0	ENST00000380152.3:c.4948del	p.Ser1650ValfsTer20	p.S1650Vfs*20	ENST00000380152		1648	gcA/gc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412473	63412473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	131	338	0	ENST00000330258.3:c.694del	p.Gln232LysfsTer50	p.Q232Kfs*50	ENST00000330258	NM_152424.3	232	Caa/aa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86679577	86679577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	118	368	0	ENST00000274376.6:c.2738G>A	p.Arg913Gln	p.R913Q	ENST00000274376	NM_002890.2	913	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912052	50912052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	161	745	0	ENST00000440232.2:c.1786G>A	p.Val596Ile	p.V596I	ENST00000440232	NM_002691.3	596	Gtc/Atc																																																																														
ALK	238	MSKCC	GRCh37	2	30143204	30143204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1268240399		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	141	764	1	ENST00000389048.3:c.322del	p.Val108SerfsTer20	p.V108Sfs*20	ENST00000389048	NM_004304.4	108	Gtc/tc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	104	454	1	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805884	46805884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	109	627	2	ENST00000290295.7:c.72del	p.Arg25GlyfsTer9	p.R25Gfs*9	ENST00000290295	NM_006361.5	24	ggG/gg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123276929	123276929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200204947		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	66	382	0	ENST00000358487.5:c.988C>T	p.Arg330Trp	p.R330W	ENST00000358487	NM_000141.4	330	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023010	27023010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	15	76	0	ENST00000324856.7:c.116C>A	p.Ala39Glu	p.A39E	ENST00000324856	NM_006015.4	39	gCg/gAg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346437	89346437	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	180	715	1	ENST00000301030.4:c.6513del	p.Val2173SerfsTer2	p.V2173Sfs*2	ENST00000301030	NM_001256183.1	2171	ccC/cc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81891943	81891943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	163	565	1	ENST00000359376.3:c.413C>T	p.Thr138Met	p.T138M	ENST00000359376	NM_002661.3	138	aCg/aTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	151	782	1	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																														
SMO	6608	MSKCC	GRCh37	7	128845479	128845479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	204	673	1	ENST00000249373.3:c.776C>T	p.Ser259Leu	p.S259L	ENST00000249373	NM_005631.4	259	tCg/tTg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6042169	6042169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35629870		P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	113	453	0	ENST00000265849.7:c.452G>A	p.Arg151His	p.R151H	ENST00000265849	NM_000535.5	151	cGc/cAc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500479	149500479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	139	646	2	ENST00000261799.4:c.2558G>A	p.Arg853Gln	p.R853Q	ENST00000261799	NM_002609.3	853	cGg/cAg																																																																														
ALK	238	MSKCC	GRCh37	2	29443582	29443582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	140	669	0	ENST00000389048.3:c.3635G>A	p.Arg1212His	p.R1212H	ENST00000389048	NM_004304.4	1212	cGc/cAc																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006101	22006101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	168	698	0	ENST00000276925.6:c.302G>A	p.Arg101Gln	p.R101Q	ENST00000276925	NM_004936.3	101	cGg/cAg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786409	135786409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	118	429	1	ENST00000298552.3:c.1121G>A	p.Ser374Asn	p.S374N	ENST00000298552	NM_001162426.1	374	aGt/aAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118347605	118347605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	147	493	0	ENST00000534358.1:c.3242G>A	p.Arg1081Gln	p.R1081Q	ENST00000534358	NM_005933.3	1081	cGa/cAa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223188	2223188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	162	644	3	ENST00000326181.6:c.800C>T	p.Thr267Met	p.T267M	ENST00000326181	NM_032271.2	267	aCg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223355	36223355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	195	858	0	ENST00000222270.7:c.5909del	p.Pro1970LeufsTer17	p.P1970Lfs*17	ENST00000222270	NM_014727.1	1969	Ccc/cc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246490641	246490641	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	60	198	2	ENST00000388985.4:c.395-2del		p.X132_splice	ENST00000388985		132																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851678	63851678	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	60	470	0	ENST00000279873.7:c.2456T>C	p.Leu819Pro	p.L819P	ENST00000279873	NM_032199.2	819	cTc/cCc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94922944	94922944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	91	235	0	ENST00000536441.1:c.524A>G	p.Gln175Arg	p.Q175R	ENST00000536441	NM_144665.3	175	cAg/cGg																																																																														
ATM	472	MSKCC	GRCh37	11	108203574	108203574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	59	317	0	ENST00000278616.4:c.7874A>G	p.Asp2625Gly	p.D2625G	ENST00000278616	NM_000051.3	2625	gAt/gGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373338	118373340	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	89	465	0	ENST00000534358.1:c.6731_6733del	p.Lys2244_Val2245delinsIle	p.K2244_V2245delinsI	ENST00000534358	NM_005933.3	2244	aAAGta/ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426380	49426380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	171	733	1	ENST00000301067.7:c.12108G>T	p.Glu4036Asp	p.E4036D	ENST00000301067	NM_003482.3	4036	gaG/gaT																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495713	56495713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	112	481	0	ENST00000267101.3:c.3903G>T	p.Gln1301His	p.Q1301H	ENST00000267101	NM_001982.3	1301	caG/caT																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112133	115112133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	164	653	1	ENST00000257566.3:c.1607C>T	p.Ala536Val	p.A536V	ENST00000257566	NM_016569.3	536	gCc/gTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133252087	133252087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	172	665	1	ENST00000320574.5:c.1123C>T	p.Arg375Trp	p.R375W	ENST00000320574	NM_006231.2	375	Cgg/Tgg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528027	103528027	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	75	347	0	ENST00000355739.4:c.3335A>T	p.Asn1112Ile	p.N1112I	ENST00000355739	NM_000123.3	1112	aAt/aTt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639828	3639828	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	173	731	0	ENST00000294008.3:c.3811T>C	p.Ser1271Pro	p.S1271P	ENST00000294008	NM_032444.2	1271	Tcc/Ccc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646281	23646281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	166	539	0	ENST00000261584.4:c.1586C>A	p.Pro529Gln	p.P529Q	ENST00000261584	NM_024675.3	529	cCa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644873	67644874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	147	508	0	ENST00000264010.4:c.143dup	p.Glu49Ter	p.E49*	ENST00000264010	NM_006565.3	46	-/G																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271789	15271789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	88	900	1	ENST00000263388.2:c.6650A>G	p.His2217Arg	p.H2217R	ENST00000263388	NM_000435.2	2217	cAt/cGt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266758	18266758	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	184	743	1	ENST00000222254.8:c.70del	p.Glu24SerfsTer9	p.E24Sfs*9	ENST00000222254	NM_005027.3	23	ctG/ct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218612	36218612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	175	762	0	ENST00000222270.7:c.4316G>A	p.Gly1439Glu	p.G1439E	ENST00000222270	NM_014727.1	1439	gGg/gAg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639556	47639557	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	55	145	0	ENST00000233146.2:c.651dup	p.Gln218SerfsTer14	p.Q218Sfs*14	ENST00000233146	NM_000251.2	217	att/aTtt																																																																														
PAK7	0	MSKCC	GRCh37	20	9561123	9561123	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	49	329	2	ENST00000353224.5:c.659A>G	p.Gln220Arg	p.Q220R	ENST00000353224	NM_177990.2	220	cAg/cGg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498420	89498420	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	35	304	0	ENST00000336596.2:c.2392T>C	p.Tyr798His	p.Y798H	ENST00000336596	NM_005233.5	798	Tac/Cac																																																																														
ATR	545	MSKCC	GRCh37	3	142188982	142188982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	58	245	1	ENST00000350721.4:c.6265C>T	p.Arg2089Ter	p.R2089*	ENST00000350721	NM_001184.3	2089	Cga/Tga																																																																														
TP63	8626	MSKCC	GRCh37	3	189612241	189612241	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	130	462	0	ENST00000264731.3:c.1993A>G	p.Met665Val	p.M665V	ENST00000264731	NM_003722.4	665	Atg/Gtg																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747995	41747996	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCG			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	10	89	0	ENST00000226382.2:c.773_774insCGC	p.Ala260dup	p.A260dup	ENST00000226382	NM_003924.3	260	gcg/gcCGCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541682	187541682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	75	371	0	ENST00000441802.2:c.6058G>A	p.Asp2020Asn	p.D2020N	ENST00000441802	NM_005245.3	2020	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112174086	112174089	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	80	280	0	ENST00000257430.4:c.2797_2800del	p.Asn933LeufsTer21	p.N933Lfs*21	ENST00000257430	NM_000038.5	932	tCAAAc/tc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223578	55223578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	170	616	1	ENST00000275493.2:c.945C>A	p.Ser315Arg	p.S315R	ENST00000275493	NM_005228.3	315	agC/agA																																																																														
MET	4233	MSKCC	GRCh37	7	116436129	116436129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	108	398	0	ENST00000397752.3:c.4124C>T	p.Ala1375Val	p.A1375V	ENST00000397752	NM_000245.2	1375	gCt/gTt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148526902	148526902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	56	171	0	ENST00000320356.2:c.402G>A	p.Met134Ile	p.M134I	ENST00000320356	NM_004456.4	134	atG/atA																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194670	29194670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	110	750	1	ENST00000240100.2:c.1058G>T	p.Arg353Leu	p.R353L	ENST00000240100	NM_001394.6	353	cGg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	327	239	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	154	609	1	ENST00000269305.4:c.810T>G	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttG																																																																														
TET1	80312	MSKCC	GRCh37	10	70404813	70404813	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	29	366	0	ENST00000373644.4:c.2327A>C	p.Lys776Thr	p.K776T	ENST00000373644	NM_030625.2	776	aAa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	517	826	1	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128268652	128268652	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145885264		P-0049956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	297	891	0	ENST00000265960.3:c.1003G>A	p.Val335Ile	p.V335I	ENST00000265960	NM_001006617.1	335	Gtt/Att																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969190	93969190	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	191	324	0	ENST00000369303.4:c.1806del	p.Pro603GlnfsTer26	p.P603Qfs*26	ENST00000369303	NM_004440.3	602	ttT/tt																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	202	274	1	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286205	66286205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	55	220	2	ENST00000273854.3:c.1481G>A	p.Arg494His	p.R494H	ENST00000273854	NM_004439.5	494	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	330	731	0	ENST00000269305.4:c.596del	p.Gly199GlufsTer48	p.G199Efs*48	ENST00000269305	NM_001126112.2	199	gGa/ga																																																																														
APC	324	MSKCC	GRCh37	5	112175569	112175569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	48	317	0	ENST00000257430.4:c.4280del	p.Pro1427LeufsTer46	p.P1427Lfs*46	ENST00000257430	NM_000038.5	1426	agC/ag																																																																														
PGR	5241	MSKCC	GRCh37	11	100998468	100998468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	276	658	0	ENST00000325455.5:c.1334G>A	p.Ser445Asn	p.S445N	ENST00000325455	NM_001202474.3	445	aGt/aAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52719887	52719887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	106	742	0	ENST00000322088.6:c.1099C>T	p.Pro367Ser	p.P367S	ENST00000322088	NM_014225.5	367	Ccc/Tcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	248	452	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	421	732	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	321	642	1	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	97	295	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	290	555	0	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																														
RFWD2	0	MSKCC	GRCh37	1	175996801	175996801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	263	524	0	ENST00000367669.3:c.1636G>T	p.Asp546Tyr	p.D546Y	ENST00000367669	NM_022457.5	546	Gac/Tac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941231	71941231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	208	1055	0	ENST00000298229.2:c.1006G>A	p.Val336Met	p.V336M	ENST00000298229	NM_001567.3	336	Gtg/Atg																																																																														
RAD52	5893	MSKCC	GRCh37	12	1039258	1039258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	145	630	1	ENST00000358495.3:c.239G>T	p.Gly80Val	p.G80V	ENST00000358495	NM_134424.2	80	gGt/gTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268805	41268805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	424	547	0	ENST00000349496.5:c.1043C>A	p.Ser348Tyr	p.S348Y	ENST00000349496	NM_001904.3	348	tCt/tAt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288244	33288244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	335	642	0	ENST00000374542.5:c.1164G>T	p.Glu388Asp	p.E388D	ENST00000374542	NM_001141970.1	388	gaG/gaT																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0050083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	326	525	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749305	43749305	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	542	507	1	ENST00000382044.4:c.1501G>T	p.Glu501Ter	p.E501*	ENST00000382044	NM_001141980.1	501	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991847	72991848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	357	554	1	ENST00000268489.5:c.2197dup	p.Tyr733LeufsTer16	p.Y733Lfs*16	ENST00000268489	NM_006885.3	733	tac/tTac																																																																														
TET2	54790	MSKCC	GRCh37	4	106155907	106155908	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	261	364	0	ENST00000380013.4:c.808_809insT	p.Thr270IlefsTer12	p.T270Ifs*12	ENST00000380013	NM_001127208.2	270	acc/aTcc																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0050137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	44	311	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0050137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	164	660	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																														
ALK	238	MSKCC	GRCh37	2	29462683	29462683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	196	627	2	ENST00000389048.3:c.2218G>A	p.Gly740Arg	p.G740R	ENST00000389048	NM_004304.4	740	Gga/Aga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668670	52668671	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	17	514	0	ENST00000394830.3:c.1248dup	p.Tyr417IlefsTer3	p.Y417Ifs*3	ENST00000394830	NM_018313.4	416	-/A																																																																														
APC	324	MSKCC	GRCh37	5	112175118	112175118	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	30	263	0	ENST00000257430.4:c.3827C>G	p.Ser1276Ter	p.S1276*	ENST00000257430	NM_000038.5	1276	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	84	368	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	188	557	1	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	59	404	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956723	68956723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	86	475	0	ENST00000288368.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000288368	NM_024870.2	281	Cgg/Tgg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711003	114711004	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	85	314	0	ENST00000543371.1:c.229_230del	p.Asp77GlnfsTer19	p.D77Qfs*19	ENST00000543371	NM_001198531.1	76	cGA/c																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67358653	67358653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	44	565	0	ENST00000327367.4:c.161C>A	p.Ala54Asp	p.A54D	ENST00000327367	NM_005902.3	54	gCc/gAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243947	5243947	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	83	544	1	ENST00000357368.4:c.1535T>C	p.Leu512Pro	p.L512P	ENST00000357368	NM_002850.3	512	cTc/cCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	279	403	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0050152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	140	242	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982331	201982332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	334	849	0	ENST00000359651.3:c.715dup	p.Asp239GlyfsTer62	p.D239Gfs*62	ENST00000359651		237	aag/aaGg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920404	114920404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	281	467	0	ENST00000543371.1:c.1345G>C	p.Ala449Pro	p.A449P	ENST00000543371	NM_001198531.1	449	Gca/Cca																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67198851	67198851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	201	424	0	ENST00000312629.5:c.322C>T	p.Arg108Cys	p.R108C	ENST00000312629	NM_003952.2	108	Cgc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920411	114920412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	298	470	0	ENST00000543371.1:c.1353dup	p.Gly452ArgfsTer3	p.G452Rfs*3	ENST00000543371	NM_001198531.1	451	ttc/ttCc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0050213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	121	225	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0050213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	68	295	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	274	646	0	ENST00000269305.4:c.577C>A	p.His193Asn	p.H193N	ENST00000269305	NM_001126112.2	193	Cat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	80	195	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030224	180030224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	303	762	0	ENST00000261937.6:c.4060C>T	p.Arg1354Cys	p.R1354C	ENST00000261937	NM_182925.4	1354	Cgc/Tgc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965472	68965472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200682883		P-0050213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	95	523	1	ENST00000288368.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000288368	NM_024870.2	362	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	99	471	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	351	965	2	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	90	236	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138456719	138456719	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	26	375	0	ENST00000289153.2:c.631A>G	p.Ser211Gly	p.S211G	ENST00000289153	NM_006219.2	211	Agc/Ggc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	15	330	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	28	727	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	38	458	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	47	365	0	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034435	47034435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	37	664	0	ENST00000329236.7:c.289G>A	p.Ala97Thr	p.A97T	ENST00000329236	NM_001204466.1	97	Gcc/Acc																																																																														
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	30	328	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																														
TEK	7010	MSKCC	GRCh37	9	27204926	27204926	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	47	455	0	ENST00000380036.4:c.2232del	p.Lys745ArgfsTer5	p.K745Rfs*5	ENST00000380036	NM_000459.3	743	Ggg/gg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425694	49425694	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	81	850	1	ENST00000301067.7:c.12794del	p.Gly4265AlafsTer13	p.G4265Afs*13	ENST00000301067	NM_003482.3	4265	gGc/gc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972645	32972645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	33	391	0	ENST00000380152.3:c.9995C>T	p.Ser3332Phe	p.S3332F	ENST00000380152		3332	tCt/tTt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106094	8106094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	114	487	0	ENST00000346208.3:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000346208		305	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380223	25380223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	102	443	0	ENST00000256078.4:c.235C>A	p.Leu79Ile	p.L79I	ENST00000256078	NM_033360.2	79	Ctt/Att																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	137	538	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	107	389	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	48	837	1	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857784	9857784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145861983		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	120	573	0	ENST00000330684.3:c.3617G>A	p.Arg1206Gln	p.R1206Q	ENST00000330684	NM_001134407.1	1206	cGa/cAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163749	152163749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	80	455	0	ENST00000206249.3:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000206249	NM_000125.3	157	cGa/cAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125024	46125024	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	57	211	0	ENST00000334344.6:c.211G>T	p.Glu71Ter	p.E71*	ENST00000334344	NM_152641.2	71	Gaa/Taa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95577791	95577791	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	67	167	0	ENST00000343455.3:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000343455	NM_177438.2	707	Gaa/Aaa																																																																														
CCNE1	898	MSKCC	GRCh37	19	30311662	30311662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	126	346	0	ENST00000262643.3:c.516C>A	p.Phe172Leu	p.F172L	ENST00000262643	NM_001238.2	172	ttC/ttA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	146	500	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588626	28588626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	160	410	0	ENST00000241453.7:c.2822C>T	p.Ser941Leu	p.S941L	ENST00000241453	NM_004119.2	941	tCg/tTg																																																																														
RHOA	387	MSKCC	GRCh37	3	49405971	49405971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	149	528	0	ENST00000418115.1:c.167C>T	p.Ala56Val	p.A56V	ENST00000418115	NM_001664.2	56	gCt/gTt																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50481162	50481162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	85	345	0	ENST00000394963.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000394963	NM_003076.4	183	cGa/cAa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47710037	47710037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	59	181	0	ENST00000233146.2:c.2754G>T	p.Lys918Asn	p.K918N	ENST00000233146	NM_000251.2	918	aaG/aaT																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325762	30325762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	74	247	0	ENST00000322652.5:c.1960C>T	p.Arg654Ter	p.R654*	ENST00000322652	NM_015355.2	654	Cga/Tga																																																																														
MET	4233	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	27	203	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176662843	176662843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	86	341	0	ENST00000439151.2:c.3818G>A	p.Arg1273His	p.R1273H	ENST00000439151	NM_022455.4	1273	cGc/cAc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812293	212812293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	53	301	0	ENST00000342788.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000342788	NM_005235.2	95	Cgt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468516	89468516	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	77	279	0	ENST00000336596.2:c.2050C>T	p.Arg684Ter	p.R684*	ENST00000336596	NM_005233.5	684	Cga/Tga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043904	180043904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56082504		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	118	719	0	ENST00000261937.6:c.3092G>A	p.Arg1031Gln	p.R1031Q	ENST00000261937	NM_182925.4	1031	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857127	9857127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	62	304	0	ENST00000330684.3:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000330684	NM_001134407.1	1425	tCg/tTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	94	425	0	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	66	280	0	ENST00000257430.4:c.4199C>T	p.Ser1400Leu	p.S1400L	ENST00000257430	NM_000038.5	1400	tCg/tTg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915943	127915943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	106	453	1	ENST00000373547.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000373547	NM_002721.4	180	Gaa/Aaa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023019	150023019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	136	600	0	ENST00000253339.5:c.244C>T	p.Arg82Ter	p.R82*	ENST00000253339		82	Cga/Tga																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56772411	56772411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	112	512	1	ENST00000337432.4:c.265G>A	p.Glu89Lys	p.E89K	ENST00000337432	NM_058216.2	89	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106524675	106524675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	60	265	0	ENST00000359195.3:c.2836G>A	p.Asp946Asn	p.D946N	ENST00000359195	NM_002649.2	946	Gac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	74	333	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29676141	29676141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	78	235	0	ENST00000358273.4:c.7193A>G	p.Tyr2398Cys	p.Y2398C	ENST00000358273	NM_001042492.2	2398	tAc/tGc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198270162	198270162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	82	312	0	ENST00000335508.6:c.1274G>A	p.Arg425Gln	p.R425Q	ENST00000335508	NM_012433.2	425	cGa/cAa																																																																														
CBL	867	MSKCC	GRCh37	11	119169179	119169179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150811339		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	41	507	1	ENST00000264033.4:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000264033	NM_005188.3	788	cGa/cAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209264	98209264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	170	796	0	ENST00000331920.6:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000331920	NM_000264.3	1425	tCg/tTg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729271	41729271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	73	404	0	ENST00000242208.4:c.1258G>A	p.Val420Met	p.V420M	ENST00000242208	NM_002192.2	420	Gtg/Atg																																																																														
CDK6	1021	MSKCC	GRCh37	7	92404119	92404119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	111	397	0	ENST00000265734.4:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000265734	NM_001259.6	87	cGa/cAa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72891539	72891539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	35	358	0	ENST00000325599.8:c.223C>T	p.Arg75Cys	p.R75C	ENST00000325599	NM_018130.2	75	Cgc/Tgc																																																																														
EED	8726	MSKCC	GRCh37	11	85989562	85989562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	95	318	0	ENST00000263360.6:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000263360	NM_003797.3	441	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	115	209	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173350	112173350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	64	292	0	ENST00000257430.4:c.2059C>A	p.Leu687Ile	p.L687I	ENST00000257430	NM_000038.5	687	Ctc/Atc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22162055	22162055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	33	458	0	ENST00000215832.6:c.200G>T	p.Arg67Ile	p.R67I	ENST00000215832	NM_002745.4	67	aGa/aTa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	72	224	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971370	13971370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	82	333	0	ENST00000405192.2:c.559C>T	p.Arg187Cys	p.R187C	ENST00000405192	NM_001163147.1	187	Cgc/Tgc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419956	152419956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	40	693	0	ENST00000206249.3:c.1643G>A	p.Arg548His	p.R548H	ENST00000206249	NM_000125.3	548	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	78	285	0	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066675	94066675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	110	495	2	ENST00000369303.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000369303	NM_004440.3	362	Gat/Aat																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444384	50444384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	90	410	0	ENST00000331340.3:c.314C>T	p.Ser105Leu	p.S105L	ENST00000331340	NM_006060.4	105	tCg/tTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008201	29008201	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	59	278	0	ENST00000282397.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000282397	NM_002019.4	224	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70347294	70347294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	108	522	0	ENST00000374080.3:c.2958G>T	p.Lys986Asn	p.K986N	ENST00000374080		986	aaG/aaT																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88677032	88677032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	82	257	2	ENST00000372037.3:c.817C>T	p.Arg273Ter	p.R273*	ENST00000372037	NM_004329.2	273	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41274877	41274877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	120	398	0	ENST00000349496.5:c.1127G>A	p.Arg376His	p.R376H	ENST00000349496	NM_001904.3	376	cGt/cAt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73333960	73333960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	92	348	0	ENST00000377767.4:c.2850G>T	p.Lys950Asn	p.K950N	ENST00000377767	NM_014953.3	950	aaG/aaT																																																																														
NUP93	9688	MSKCC	GRCh37	16	56862974	56862974	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	103	419	1	ENST00000308159.5:c.880C>T	p.Arg294Ter	p.R294*	ENST00000308159	NM_014669.4	294	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76938406	76938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	113	483	0	ENST00000373344.5:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000373344	NM_000489.3	781	cGa/cAa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247418	71247418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	159	652	0	ENST00000318789.4:c.115G>A	p.Gly39Arg	p.G39R	ENST00000318789	NM_032682.5	39	Gga/Aga																																																																														
EED	8726	MSKCC	GRCh37	11	85963241	85963241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	46	258	0	ENST00000263360.6:c.319G>A	p.Glu107Lys	p.E107K	ENST00000263360	NM_003797.3	107	Gaa/Aaa																																																																														
WT1	7490	MSKCC	GRCh37	11	32414232	32414232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	91	332	0	ENST00000332351.3:c.1319G>A	p.Arg440Lys	p.R440K	ENST00000332351	NM_024426.4	440	aGa/aAa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867256	45867256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	158	942	0	ENST00000391945.4:c.937G>A	p.Glu313Lys	p.E313K	ENST00000391945	NM_000400.3	313	Gaa/Aaa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55140704	55140704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	43	515	0	ENST00000257290.5:c.1565G>A	p.Arg522His	p.R522H	ENST00000257290	NM_006206.4	522	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	58	211	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																														
ARAF	369	MSKCC	GRCh37	X	47428244	47428244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	177	774	0	ENST00000377045.4:c.1204G>A	p.Asp402Asn	p.D402N	ENST00000377045	NM_001654.4	402	Gac/Aac																																																																														
FYN	2534	MSKCC	GRCh37	6	112024169	112024169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	75	381	0	ENST00000368678.4:c.616C>T	p.Arg206Cys	p.R206C	ENST00000368678		206	Cgc/Tgc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038082	128038082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	119	413	0	ENST00000285398.2:c.1468G>A	p.Glu490Lys	p.E490K	ENST00000285398	NM_000122.1	490	Gaa/Aaa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181425	185181425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1435276633		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	96	371	0	ENST00000265026.3:c.1366C>T	p.Arg456Ter	p.R456*	ENST00000265026	NM_004721.4	456	Cga/Tga																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793716	89793716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	99	321	0	ENST00000336032.3:c.785C>T	p.Ser262Leu	p.S262L	ENST00000336032	NM_006813.2	262	tCg/tTg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11984773	11984773	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	78	316	0	ENST00000353533.5:c.319G>T	p.Glu107Ter	p.E107*	ENST00000353533	NM_003010.3	107	Gaa/Taa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626461	12626461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	99	480	0	ENST00000251849.4:c.1688G>A	p.Arg563Gln	p.R563Q	ENST00000251849	NM_002880.3	563	cGa/cAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918695	44918695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	84	454	2	ENST00000377967.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000377967	NM_021140.2	393	cGa/cAa																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871797	12871797	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	78	179	0	ENST00000228872.4:c.514G>T	p.Glu172Ter	p.E172*	ENST00000228872	NM_004064.3	172	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827580	72827580	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	136	540	0	ENST00000268489.5:c.9001G>T	p.Glu3001Ter	p.E3001*	ENST00000268489	NM_006885.3	3001	Gaa/Taa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39570469	39570469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	14	138	0	ENST00000262039.4:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000262039	NM_002647.2	222	cGa/cAa																																																																														
REL	5966	MSKCC	GRCh37	2	61128173	61128173	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	71	194	0	ENST00000295025.8:c.349G>T	p.Glu117Ter	p.E117*	ENST00000295025	NM_002908.2	117	Gaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435088	18435088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	81	296	0	ENST00000266497.5:c.73C>A	p.Leu25Ile	p.L25I	ENST00000266497		25	Ctc/Atc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95596408	95596408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	81	257	0	ENST00000343455.3:c.560G>A	p.Arg187Gln	p.R187Q	ENST00000343455	NM_177438.2	187	cGa/cAa																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650601	48650601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140561920		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	119	743	1	ENST00000376670.3:c.571C>T	p.Arg191Cys	p.R191C	ENST00000376670	NM_002049.3	191	Cgt/Tgt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58701094	58701094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	105	499	0	ENST00000305921.3:c.685G>A	p.Glu229Lys	p.E229K	ENST00000305921	NM_003620.3	229	Gaa/Aaa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81957133	81957133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	148	607	2	ENST00000359376.3:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000359376	NM_002661.3	784	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	85	396	0	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56409145	56409145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	75	320	1	ENST00000348428.3:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000348428	NM_006785.3	551	cGa/cAa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100016	11100016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	171	670	2	ENST00000344626.4:c.1142G>A	p.Arg381Gln	p.R381Q	ENST00000344626	NM_003072.3	381	cGa/cAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670400	88670400	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs140016144		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	67	299	1	ENST00000360948.2:c.1286C>A	p.Thr429Asn	p.T429N	ENST00000360948	NM_001012338.2	429	aCt/aAt																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137525525	137525525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146687518		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	32	466	0	ENST00000367739.4:c.490G>A	p.Glu164Lys	p.E164K	ENST00000367739	NM_000416.2	164	Gaa/Aaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638900	176638900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	138	535	0	ENST00000439151.2:c.3500G>A	p.Arg1167His	p.R1167H	ENST00000439151	NM_022455.4	1167	cGc/cAc																																																																														
TEK	7010	MSKCC	GRCh37	9	27158095	27158095	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	35	444	1	ENST00000380036.4:c.319C>T	p.Arg107Ter	p.R107*	ENST00000380036	NM_000459.3	107	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662700	117662700	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	111	373	1	ENST00000368508.3:c.4765G>T	p.Glu1589Ter	p.E1589*	ENST00000368508	NM_002944.2	1589	Gaa/Taa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513314	106513314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	85	323	0	ENST00000359195.3:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000359195	NM_002649.2	740	Gag/Aag																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246518379	246518379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	109	394	0	ENST00000388985.4:c.182G>A	p.Arg61Gln	p.R61Q	ENST00000388985		61	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532732	187532732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	122	494	0	ENST00000441802.2:c.9661C>A	p.Leu3221Ile	p.L3221I	ENST00000441802	NM_005245.3	3221	Ctt/Att																																																																														
NBN	4683	MSKCC	GRCh37	8	90955524	90955524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	35	386	1	ENST00000265433.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000265433	NM_002485.4	714	cGa/cAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223853	53223853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	199	966	3	ENST00000375401.3:c.3506C>T	p.Ser1169Leu	p.S1169L	ENST00000375401	NM_004187.3	1169	tCg/tTg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	30	419	0	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180252	38180252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	170	806	0	ENST00000396334.3:c.100C>T	p.Pro34Ser	p.P34S	ENST00000396334	NM_002468.4	34	Ccc/Tcc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992930	72992930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	180	790	1	ENST00000268489.5:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000268489	NM_006885.3	372	cGa/cAa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193116996	193116996	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	72	237	0	ENST00000367435.3:c.730-1G>T		p.X244_splice	ENST00000367435	NM_024529.4	244																																																																															
ATRX	546	MSKCC	GRCh37	X	76937553	76937553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	72	326	0	ENST00000373344.5:c.3195G>T	p.Glu1065Asp	p.E1065D	ENST00000373344	NM_000489.3	1065	gaG/gaT																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439945	56439945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	197	703	0	ENST00000407977.2:c.647C>T	p.Ser216Leu	p.S216L	ENST00000407977		216	tCg/tTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931826	68931826	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	106	450	1	ENST00000288368.4:c.256G>T	p.Glu86Ter	p.E86*	ENST00000288368	NM_024870.2	86	Gaa/Taa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932000	39932000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	51	725	2	ENST00000378444.4:c.2599G>A	p.Glu867Lys	p.E867K	ENST00000378444	NM_001123385.1	867	Gaa/Aaa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413077	63413077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	166	808	1	ENST00000330258.3:c.90G>T	p.Lys30Asn	p.K30N	ENST00000330258	NM_152424.3	30	aaG/aaT																																																																														
WT1	7490	MSKCC	GRCh37	11	32417946	32417946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	117	455	0	ENST00000332351.3:c.1106G>A	p.Arg369Gln	p.R369Q	ENST00000332351	NM_024426.4	369	cGa/cAa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117503	4117503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	23	397	0	ENST00000262948.5:c.217G>A	p.Glu73Lys	p.E73K	ENST00000262948	NM_030662.3	73	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52582249	52582249	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	22	199	1	ENST00000394830.3:c.4579C>T	p.Arg1527Ter	p.R1527*	ENST00000394830	NM_018313.4	1527	Cga/Tga																																																																														
MSH3	4437	MSKCC	GRCh37	5	79961137	79961137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	128	434	0	ENST00000265081.6:c.534G>T	p.Lys178Asn	p.K178N	ENST00000265081	NM_002439.4	178	aaG/aaT																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924402	131924402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	87	262	0	ENST00000265335.6:c.1075C>T	p.Arg359Cys	p.R359C	ENST00000265335		359	Cgc/Tgc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797788	32797788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	48	615	0	ENST00000374899.4:c.1714G>A	p.Glu572Lys	p.E572K	ENST00000374899	NM_018833.2	572	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116339776	116339776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	101	381	0	ENST00000397752.3:c.638C>T	p.Ser213Leu	p.S213L	ENST00000397752	NM_000245.2	213	tCg/tTg																																																																														
SYK	6850	MSKCC	GRCh37	9	93650169	93650169	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	74	428	0	ENST00000375746.1:c.1720C>T	p.Arg574Ter	p.R574*	ENST00000375746	NM_001174167.1	574	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41547973	41547973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	146	593	0	ENST00000263253.7:c.2954A>G	p.Asp985Gly	p.D985G	ENST00000263253	NM_001429.3	985	gAt/gGt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211219	36211219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	250	913	1	ENST00000222270.7:c.970G>A	p.Glu324Lys	p.E324K	ENST00000222270	NM_014727.1	324	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69136820	69136820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	88	422	2	ENST00000288368.4:c.4734G>T	p.Lys1578Asn	p.K1578N	ENST00000288368	NM_024870.2	1578	aaG/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557804	187557804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	111	404	0	ENST00000441802.2:c.3907G>A	p.Glu1303Lys	p.E1303K	ENST00000441802	NM_005245.3	1303	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7125473	7125473	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	64	749	1	ENST00000302850.5:c.3079C>T	p.Arg1027Ter	p.R1027*	ENST00000302850	NM_000208.2	1027	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	48921968	48921968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	77	186	0	ENST00000267163.4:c.508G>T	p.Glu170Ter	p.E170*	ENST00000267163	NM_000321.2	170	Gaa/Taa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436148	56436148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	47	602	0	ENST00000407977.2:c.989G>A	p.Arg330Gln	p.R330Q	ENST00000407977		330	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112179582	112179582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	65	314	0	ENST00000257430.4:c.8291C>T	p.Ser2764Phe	p.S2764F	ENST00000257430	NM_000038.5	2764	tCt/tTt																																																																														
ABL1	25	MSKCC	GRCh37	9	133750417	133750417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	148	524	0	ENST00000318560.5:c.1248C>A	p.Phe416Leu	p.F416L	ENST00000318560	NM_005157.4	416	ttC/ttA																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273218	115273218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	89	430	0	ENST00000438362.2:c.1240C>T	p.Arg414Cys	p.R414C	ENST00000438362	NM_001242891.1	414	Cgt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031690	69031690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	99	389	0	ENST00000288368.4:c.3445C>T	p.Arg1149Cys	p.R1149C	ENST00000288368	NM_024870.2	1149	Cgc/Tgc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95599661	95599661	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	79	310	0	ENST00000343455.3:c.135A>C	p.Arg45Ser	p.R45S	ENST00000343455	NM_177438.2	45	agA/agC																																																																														
ALK	238	MSKCC	GRCh37	2	29443676	29443676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56315533		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	133	635	1	ENST00000389048.3:c.3541C>T	p.Arg1181Cys	p.R1181C	ENST00000389048	NM_004304.4	1181	Cgc/Tgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350734	89350734	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146294483		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	199	648	1	ENST00000301030.4:c.2216C>T	p.Ser739Leu	p.S739L	ENST00000301030	NM_001256183.1	739	tCg/tTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243238	123243238	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	159	697	1	ENST00000358487.5:c.2275C>T	p.Arg759Ter	p.R759*	ENST00000358487	NM_000141.4	759	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112176209	112176209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	94	422	0	ENST00000257430.4:c.4918C>T	p.Arg1640Trp	p.R1640W	ENST00000257430	NM_000038.5	1640	Cgg/Tgg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816896	32816896	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	102	409	0	ENST00000354258.4:c.1429-1G>T		p.X477_splice	ENST00000354258	NM_000593.5	477																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729635	162729635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	51	527	0	ENST00000367921.3:c.721G>A	p.Asp241Asn	p.D241N	ENST00000367921	NM_006182.2	241	Gat/Aat																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902934	1902934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	156	562	1	ENST00000382891.5:c.553G>A	p.Glu185Lys	p.E185K	ENST00000382891	NM_133335.3	185	Gaa/Aaa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818213	32818213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs143800384		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	187	725	1	ENST00000354258.4:c.1312C>T	p.Arg438Ter	p.R438*	ENST00000354258	NM_000593.5	438	Cga/Tga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114169	115114169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	128	584	0	ENST00000257566.3:c.1048G>A	p.Ala350Thr	p.A350T	ENST00000257566	NM_016569.3	350	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	49	212	0	ENST00000257430.4:c.4634C>A	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176490	123176490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	81	212	1	ENST00000218089.9:c.457G>A	p.Asp153Asn	p.D153N	ENST00000218089	NM_001042749.1	153	Gat/Aat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880126	151880126	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146495785		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	89	378	0	ENST00000262189.6:c.5198C>T	p.Ser1733Leu	p.S1733L	ENST00000262189	NM_170606.2	1733	tCg/tTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28597612	28597612	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	91	346	1	ENST00000241453.7:c.2293G>T	p.Glu765Ter	p.E765*	ENST00000241453	NM_004119.2	765	Gaa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55963886	55963886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	106	413	0	ENST00000263923.4:c.2557G>A	p.Ala853Thr	p.A853T	ENST00000263923	NM_002253.2	853	Gcc/Acc																																																																														
ATRX	546	MSKCC	GRCh37	X	76953086	76953086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	89	396	0	ENST00000373344.5:c.227C>T	p.Ser76Leu	p.S76L	ENST00000373344	NM_000489.3	76	tCg/tTg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740444	58740444	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	81	503	0	ENST00000305921.3:c.1349T>G	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	450	tTa/tGa																																																																														
ATR	545	MSKCC	GRCh37	3	142279297	142279297	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	78	258	0	ENST00000350721.4:c.1350-1G>T		p.X450_splice	ENST00000350721	NM_001184.3	450																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31017155	31017155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	24	275	0	ENST00000375687.4:c.486G>T	p.Lys162Asn	p.K162N	ENST00000375687	NM_015338.5	162	aaG/aaT																																																																														
XIAP	331	MSKCC	GRCh37	X	123020096	123020096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	191	688	1	ENST00000355640.3:c.584G>A	p.Gly195Asp	p.G195D	ENST00000355640		195	gGt/gAt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752361	57752361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	85	295	0	ENST00000274289.3:c.1212G>T	p.Lys404Asn	p.K404N	ENST00000274289	NM_006622.3	404	aaG/aaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176719015	176719015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321310131		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	71	275	1	ENST00000439151.2:c.6319C>T	p.Arg2107Cys	p.R2107C	ENST00000439151	NM_022455.4	2107	Cgc/Tgc																																																																														
PAK7	0	MSKCC	GRCh37	20	9523334	9523334	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	63	504	0	ENST00000353224.5:c.1903G>T	p.Glu635Ter	p.E635*	ENST00000353224	NM_177990.2	635	Gaa/Taa																																																																														
CASP8	841	MSKCC	GRCh37	2	202131364	202131364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	86	410	0	ENST00000358485.4:c.332G>T	p.Arg111Ile	p.R111I	ENST00000358485	NM_001080125.1	111	aGa/aTa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193104673	193104673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	82	300	0	ENST00000367435.3:c.377G>A	p.Arg126Gln	p.R126Q	ENST00000367435	NM_024529.4	126	cGa/cAa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25471054	25471054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	58	870	1	ENST00000264709.3:c.707C>A	p.Ser236Tyr	p.S236Y	ENST00000264709	NM_175629.2	236	tCt/tAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819291	3819291	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	146	488	0	ENST00000262367.5:c.2944G>T	p.Glu982Ter	p.E982*	ENST00000262367	NM_004380.2	982	Gaa/Taa																																																																														
ALK	238	MSKCC	GRCh37	2	29940449	29940449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	74	294	0	ENST00000389048.3:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000389048	NM_004304.4	261	cGa/cAa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56832433	56832433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	62	383	0	ENST00000308159.5:c.343G>A	p.Glu115Lys	p.E115K	ENST00000308159	NM_014669.4	115	Gaa/Aaa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739335	46739335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	87	499	0	ENST00000371975.4:c.1526G>A	p.Arg509Gln	p.R509Q	ENST00000371975	NM_003579.3	509	cGa/cAa																																																																														
SMO	6608	MSKCC	GRCh37	7	128852036	128852036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	68	929	0	ENST00000249373.3:c.2108G>A	p.Arg703Gln	p.R703Q	ENST00000249373	NM_005631.4	703	cGa/cAa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911048	29911048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	196	1142	2	ENST00000376809.5:c.347C>A	p.Ser116Tyr	p.S116Y	ENST00000376809	NM_002116.7	116	tCt/tAt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112152	115112152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	147	783	3	ENST00000257566.3:c.1588G>A	p.Ala530Thr	p.A530T	ENST00000257566	NM_016569.3	530	Gcc/Acc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924292	112924292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	44	686	0	ENST00000351677.2:c.1238G>T	p.Arg413Ile	p.R413I	ENST00000351677	NM_002834.3	413	aGa/aTa																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99808233	99808233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	45	476	0	ENST00000280892.6:c.456G>T	p.Glu152Asp	p.E152D	ENST00000280892	NM_001130678.1	152	gaG/gaT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911648	39911648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	112	483	0	ENST00000378444.4:c.4982G>A	p.Arg1661Gln	p.R1661Q	ENST00000378444	NM_001123385.1	1661	cGa/cAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960059	134960059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	134	628	0	ENST00000398015.3:c.2416G>A	p.Asp806Asn	p.D806N	ENST00000398015	NM_004441.4	806	Gac/Aac																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701940	43701940	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	31	124	0	ENST00000382044.4:c.5306-1G>T		p.X1769_splice	ENST00000382044	NM_001141980.1	1769																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484375	8484375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	61	258	0	ENST00000356435.5:c.3157C>A	p.Leu1053Ile	p.L1053I	ENST00000356435		1053	Ctt/Att																																																																														
ATRX	546	MSKCC	GRCh37	X	76938149	76938149	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	142	544	0	ENST00000373344.5:c.2599A>C	p.Asn867His	p.N867H	ENST00000373344	NM_000489.3	867	Aat/Cat																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644588	21644588	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	122	404	0	ENST00000421138.2:c.79G>T	p.Glu27Ter	p.E27*	ENST00000421138		27	Gaa/Taa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074259	8074259	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	97	455	0	ENST00000377482.5:c.400A>C	p.Lys134Gln	p.K134Q	ENST00000377482	NM_018948.3	134	Aaa/Caa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254836	16254836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	145	497	0	ENST00000375759.3:c.2101G>A	p.Glu701Lys	p.E701K	ENST00000375759	NM_015001.2	701	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255539	16255539	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	105	440	0	ENST00000375759.3:c.2804T>G	p.Val935Gly	p.V935G	ENST00000375759	NM_015001.2	935	gTt/gGt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256657	16256657	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	103	423	0	ENST00000375759.3:c.3922A>C	p.Lys1308Gln	p.K1308Q	ENST00000375759	NM_015001.2	1308	Aaa/Caa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097812	27097812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	65	348	0	ENST00000324856.7:c.3401C>A	p.Ser1134Tyr	p.S1134Y	ENST00000324856	NM_006015.4	1134	tCt/tAt																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39311614	39311614	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	102	324	0	ENST00000373001.3:c.1045A>C	p.Lys349Gln	p.K349Q	ENST00000373001	NM_022157.3	349	Aaa/Caa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163771	72163771	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	93	491	0	ENST00000357731.5:c.587A>G	p.Asp196Gly	p.D196G	ENST00000357731	NM_173808.2	196	gAc/gGc																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117690341	117690341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	121	447	0	ENST00000369458.3:c.788C>A	p.Ser263Tyr	p.S263Y	ENST00000369458	NM_024626.3	263	tCt/tAt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849121	156849121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	151	821	1	ENST00000524377.1:c.2013G>T	p.Met671Ile	p.M671I	ENST00000524377	NM_002529.3	671	atG/atT																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054974	176054974	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	137	498	0	ENST00000367669.3:c.1079T>G	p.Leu360Arg	p.L360R	ENST00000367669	NM_022457.5	360	cTt/cGt																																																																														
MDM4	4194	MSKCC	GRCh37	1	204513681	204513681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	65	214	1	ENST00000367182.3:c.691G>T	p.Val231Phe	p.V231F	ENST00000367182	NM_001278516.1	231	Gtt/Ttt																																																																														
TET1	80312	MSKCC	GRCh37	10	70333293	70333293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	163	616	1	ENST00000373644.4:c.1198G>A	p.Gly400Ser	p.G400S	ENST00000373644	NM_030625.2	400	Ggt/Agt																																																																														
TET1	80312	MSKCC	GRCh37	10	70333858	70333858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	91	369	0	ENST00000373644.4:c.1763G>T	p.Arg588Ile	p.R588I	ENST00000373644	NM_030625.2	588	aGa/aTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70405613	70405613	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	67	406	0	ENST00000373644.4:c.3127A>C	p.Asn1043His	p.N1043H	ENST00000373644	NM_030625.2	1043	Aat/Cat																																																																														
TET1	80312	MSKCC	GRCh37	10	70405743	70405743	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	79	424	1	ENST00000373644.4:c.3257C>A	p.Ser1086Ter	p.S1086*	ENST00000373644	NM_030625.2	1086	tCg/tAg																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112745388	112745388	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	24	327	0	ENST00000369452.4:c.706G>T	p.Glu236Ter	p.E236*	ENST00000369452	NM_007373.3	236	Gaa/Taa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243247	123243247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	162	727	0	ENST00000358487.5:c.2266G>T	p.Asp756Tyr	p.D756Y	ENST00000358487	NM_000141.4	756	Gac/Tac																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14300952	14300952	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	106	326	0	ENST00000256196.4:c.546A>C	p.Glu182Asp	p.E182D	ENST00000256196		182	gaA/gaC																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205149	61205149	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	147	563	0	ENST00000301761.2:c.89C>A	p.Ser30Ter	p.S30*	ENST00000301761	NM_017841.2	30	tCa/tAa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189489	94189489	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	124	270	0	ENST00000323929.3:c.1516G>T	p.Glu506Ter	p.E506*	ENST00000323929	NM_005591.3	506	Gaa/Taa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94918473	94918473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	89	398	0	ENST00000536441.1:c.709C>A	p.Leu237Ile	p.L237I	ENST00000536441	NM_144665.3	237	Ctt/Att																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373947	118373947	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	88	285	0	ENST00000534358.1:c.7340A>C	p.Lys2447Thr	p.K2447T	ENST00000534358	NM_005933.3	2447	aAa/aCa																																																																														
CBL	867	MSKCC	GRCh37	11	119144672	119144672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	126	418	0	ENST00000264033.4:c.685G>T	p.Asp229Tyr	p.D229Y	ENST00000264033	NM_005188.3	229	Gat/Tat																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125514453	125514453	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	87	311	0	ENST00000428830.2:c.1148A>C	p.Lys383Thr	p.K383T	ENST00000428830	NM_001114121.2	383	aAa/aCa																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871034	12871034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	105	435	1	ENST00000228872.4:c.261C>A	p.Phe87Leu	p.F87L	ENST00000228872	NM_004064.3	87	ttC/ttA																																																																														
RECQL	5965	MSKCC	GRCh37	12	21643189	21643189	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	155	524	1	ENST00000421138.2:c.338T>C	p.Met113Thr	p.M113T	ENST00000421138		113	aTg/aCg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46233214	46233214	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	96	339	0	ENST00000334344.6:c.1433T>G	p.Leu478Ter	p.L478*	ENST00000334344	NM_152641.2	478	tTa/tGa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243524	46243524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	64	286	0	ENST00000334344.6:c.1877C>A	p.Ser626Tyr	p.S626Y	ENST00000334344	NM_152641.2	626	tCt/tAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438734	49438734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	173	646	0	ENST00000301067.7:c.4756C>T	p.Arg1586Cys	p.R1586C	ENST00000301067	NM_003482.3	1586	Cgc/Tgc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58142358	58142358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	106	407	0	ENST00000257904.6:c.862C>T	p.Arg288Ter	p.R288*	ENST00000257904	NM_000075.3	288	Cga/Tga																																																																														
MSI1	4440	MSKCC	GRCh37	12	120789165	120789165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	40	512	0	ENST00000257552.2:c.772G>A	p.Val258Ile	p.V258I	ENST00000257552	NM_002442.3	258	Gtc/Atc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911551	32911551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	24	297	1	ENST00000380152.3:c.3059C>A	p.Ser1020Tyr	p.S1020Y	ENST00000380152		1020	tCt/tAt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103508433	103508433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	42	144	0	ENST00000355739.4:c.499G>A	p.Glu167Lys	p.E167K	ENST00000355739	NM_000123.3	167	Gaa/Aaa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519130	103519130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	38	454	0	ENST00000355739.4:c.2468G>T	p.Arg823Ile	p.R823I	ENST00000355739	NM_000123.3	823	aGa/aTa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81534632	81534632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	77	372	0	ENST00000298171.2:c.277G>A	p.Glu93Lys	p.E93K	ENST00000298171	NM_000369.2	93	Gaa/Aaa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643393	38643393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	109	381	2	ENST00000299084.4:c.863A>C	p.Lys288Thr	p.K288T	ENST00000299084	NM_152594.2	288	aAa/aCa																																																																														
MGA	23269	MSKCC	GRCh37	15	42003367	42003367	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	146	455	0	ENST00000219905.7:c.2904T>G	p.Ile968Met	p.I968M	ENST00000219905	NM_001164273.1	968	atT/atG																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43720305	43720305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	171	544	0	ENST00000382044.4:c.3737G>T	p.Arg1246Ile	p.R1246I	ENST00000382044	NM_001141980.1	1246	aGa/aTa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43738660	43738660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	127	528	0	ENST00000382044.4:c.2965A>C	p.Lys989Gln	p.K989Q	ENST00000382044	NM_001141980.1	989	Aaa/Caa																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630482	90630482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	151	507	0	ENST00000330062.3:c.829G>A	p.Asp277Asn	p.D277N	ENST00000330062	NM_002168.2	277	Gac/Aac																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396898	396898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	170	749	1	ENST00000262320.3:c.128G>A	p.Ser43Asn	p.S43N	ENST00000262320	NM_003502.3	43	aGt/aAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778302	3778909	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTGCTGCTGCTGCATGGCCGGTGGGTAGCCTCCGGGTCCTTGAGGCTGCTGGAACTGGCCGTGCCCCGCCATGCCCCCAGCCATGCCGGCACTCCCTTGCTGCTGCTGCTGTTGCTGCTGTTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCAGCAGCTGCCTCCGTAACATTTCTCGGTACTGTGGATTCATACTCGCCATGTTGGGGTTGTGTCCTGGGTTCATGATGTTCAAGGCCTGGCCCTGGGGGTTCAGGCCTCCCATCGCCTGCTGCTGTGGAGGCACACCGGGCCGCGGCACGCCAGCCTGCATGGCATTCAGGTTCTGCAGGCTGGGCTGCTGGTGCATGCCAGGCTGGGGTTGCATGCCGGGCTGGGACTGGAGGCCAGGCTGGGGCTGCATGCCGGGCTGATTGGCCACGTACTTGGCTGTGCGCTGTTTGATGAAAGCTGCCATTAGCTGCGGGTTTGATTTGAGAATGTTCAGCACCTGCTGTTGCTGCTGAGGGGAGCTGGGCGACTTCAGGGTCCGCAGCAGGTCTTGCAGAGCGCTGGGTGAGATGCTCCTGGGTGGCTGCACGCTGGGCATCCGGGGCCCAGCCACGGC	CGCTGCTGCTGCTGCATGGCCGGTGGGTAGCCTCCGGGTCCTTGAGGCTGCTGGAACTGGCCGTGCCCCGCCATGCCCCCAGCCATGCCGGCACTCCCTTGCTGCTGCTGCTGTTGCTGCTGTTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCAGCAGCTGCCTCCGTAACATTTCTCGGTACTGTGGATTCATACTCGCCATGTTGGGGTTGTGTCCTGGGTTCATGATGTTCAAGGCCTGGCCCTGGGGGTTCAGGCCTCCCATCGCCTGCTGCTGTGGAGGCACACCGGGCCGCGGCACGCCAGCCTGCATGGCATTCAGGTTCTGCAGGCTGGGCTGCTGGTGCATGCCAGGCTGGGGTTGCATGCCGGGCTGGGACTGGAGGCCAGGCTGGGGCTGCATGCCGGGCTGATTGGCCACGTACTTGGCTGTGCGCTGTTTGATGAAAGCTGCCATTAGCTGCGGGTTTGATTTGAGAATGTTCAGCACCTGCTGTTGCTGCTGAGGGGAGCTGGGCGACTTCAGGGTCCGCAGCAGGTCTTGCAGAGCGCTGGGTGAGATGCTCCTGGGTGGCTGCACGCTGGGCATCCGGGGCCCAGCCACGGC	-			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	39	919	0	ENST00000262367.5:c.6139_6746del	p.Ala2047HisfsTer91	p.A2047Hfs*91	ENST00000262367	NM_004380.2	2047	GCCGTGGCTGGGCCCCGGATGCCCAGCGTGCAGCCACCCAGGAGCATCTCACCCAGCGCTCTGCAAGACCTGCTGCGGACCCTGAAGTCGCCCAGCTCCCCTCAGCAGCAACAGCAGGTGCTGAACATTCTCAAATCAAACCCGCAGCTAATGGCAGCTTTCATCAAACAGCGCACAGCCAAGTACGTGGCCAATCAGCCCGGCATGCAGCCCCAGCCTGGCCTCCAGTCCCAGCCCGGCATGCAACCCCAGCCTGGCATGCACCAGCAGCCCAGCCTGCAGAACCTGAATGCCATGCAGGCTGGCGTGCCGCGGCCCGGTGTGCCTCCACAGCAGCAGGCGATGGGAGGCCTGAACCCCCAGGGCCAGGCCTTGAACATCATGAACCCAGGACACAACCCCAACATGGCGAGTATGAATCCACAGTACCGAGAAATGTTACGGAGGCAGCTGCTGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAGCAAGGGAGTGCCGGCATGGCTGGGGGCATGGCGGGGCACGGCCAGTTCCAGCAGCCTCAAGGACCCGGAGGCTACCCACCGGCCATGCAGCAGCAGCAGCGc/c																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029165	14029165	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs201179693		P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	63	224	0	ENST00000311895.7:c.1376C>A	p.Ser459Ter	p.S459*	ENST00000311895	NM_005236.2	459	tCa/tAa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813676	50813676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	163	647	0	ENST00000398568.2:c.1230G>T	p.Glu410Asp	p.E410D	ENST00000398568	NM_001042412.1	410	gaG/gaT																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645247	67645247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	155	545	0	ENST00000264010.4:c.512C>T	p.Ala171Val	p.A171V	ENST00000264010	NM_006565.3	171	gCc/gTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845920	72845920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	115	411	0	ENST00000268489.5:c.3547G>A	p.Glu1183Lys	p.E1183K	ENST00000268489	NM_006885.3	1183	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81925192	81925192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	87	412	0	ENST00000359376.3:c.983A>C	p.Asn328Thr	p.N328T	ENST00000359376	NM_002661.3	328	aAc/aCc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348898	89348898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	193	776	0	ENST00000301030.4:c.4052G>A	p.Arg1351Lys	p.R1351K	ENST00000301030	NM_001256183.1	1351	aGa/aAa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877208	89877208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	38	368	0	ENST00000389301.3:c.429G>T	p.Lys143Asn	p.K143N	ENST00000389301	NM_000135.2	143	aaG/aaT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968319	15968319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	69	236	0	ENST00000268712.3:c.4966A>G	p.Thr1656Ala	p.T1656A	ENST00000268712	NM_006311.3	1656	Acc/Gcc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618341	37618341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	67	376	0	ENST00000447079.4:c.17G>T	p.Arg6Ile	p.R6I	ENST00000447079	NM_015083.1	6	aGa/aTa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37672043	37672043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	134	426	0	ENST00000447079.4:c.2828C>T	p.Ala943Val	p.A943V	ENST00000447079	NM_015083.1	943	gCt/gTt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681036	37681036	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	119	474	0	ENST00000447079.4:c.3205G>T	p.Glu1069Ter	p.E1069*	ENST00000447079	NM_015083.1	1069	Gaa/Taa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40476739	40476739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	151	519	0	ENST00000264657.5:c.1590G>T	p.Glu530Asp	p.E530D	ENST00000264657	NM_139276.2	530	gaG/gaT																																																																														
EZH1	2145	MSKCC	GRCh37	17	40872368	40872368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	173	659	0	ENST00000428826.2:c.587A>G	p.Asp196Gly	p.D196G	ENST00000428826		196	gAc/gGc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59770859	59770859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	85	271	0	ENST00000259008.2:c.2507G>T	p.Arg836Ile	p.R836I	ENST00000259008	NM_032043.2	836	aGa/aTa																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66521910	66521910	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	67	301	1	ENST00000358598.2:c.565G>T	p.Glu189Ter	p.E189*	ENST00000358598	NM_212471.2	189	Gaa/Taa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39595519	39595519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	18	231	0	ENST00000262039.4:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000262039	NM_002647.2	469	Gaa/Aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604755	48604755	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	117	398	0	ENST00000342988.3:c.1577A>T	p.Glu526Val	p.E526V	ENST00000342988	NM_005359.5	526	gAa/gTa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56390314	56390314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	59	231	1	ENST00000348428.3:c.1053G>T	p.Met351Ile	p.M351I	ENST00000348428	NM_006785.3	351	atG/atT																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5219336	5219336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	153	728	0	ENST00000357368.4:c.3908T>C	p.Ile1303Thr	p.I1303T	ENST00000357368	NM_002850.3	1303	aTc/aCc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5260819	5260819	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	127	677	1	ENST00000357368.4:c.592C>T	p.Arg198Ter	p.R198*	ENST00000357368	NM_002850.3	198	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302370	15302370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	220	996	0	ENST00000263388.2:c.901G>A	p.Val301Met	p.V301M	ENST00000263388	NM_000435.2	301	Gtg/Atg																																																																														
AXL	558	MSKCC	GRCh37	19	41744394	41744394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	164	818	0	ENST00000301178.4:c.1014G>T	p.Glu338Asp	p.E338D	ENST00000301178	NM_021913.4	338	gaG/gaT																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46597047	46597047	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	41	506	0	ENST00000263734.3:c.861G>T	p.Glu287Asp	p.E287D	ENST00000263734	NM_001430.4	287	gaG/gaT																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693916	47693916	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	82	282	0	ENST00000233146.2:c.1630A>C	p.Ile544Leu	p.I544L	ENST00000233146	NM_000251.2	544	Atc/Ctc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873082	136873082	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	99	461	0	ENST00000241393.3:c.416T>C	p.Val139Ala	p.V139A	ENST00000241393	NM_003467.2	139	gTc/gCc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198263244	198263244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	83	355	0	ENST00000335508.6:c.3075G>T	p.Lys1025Asn	p.K1025N	ENST00000335508	NM_012433.2	1025	aaG/aaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248708	212248708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	67	353	0	ENST00000342788.4:c.3559G>A	p.Glu1187Lys	p.E1187K	ENST00000342788	NM_005235.2	1187	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578311	212578311	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	80	412	1	ENST00000342788.4:c.946G>T	p.Glu316Ter	p.E316*	ENST00000342788	NM_005235.2	316	Gaa/Taa																																																																														
PAK7	0	MSKCC	GRCh37	20	9520188	9520188	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	77	447	0	ENST00000353224.5:c.2081T>A	p.Leu694His	p.L694H	ENST00000353224	NM_177990.2	694	cTc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770580	40770580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	30	419	0	ENST00000373198.4:c.2802G>T	p.Lys934Asn	p.K934N	ENST00000373198	NM_133170.3	934	aaG/aaT																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626703	12626703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	121	490	0	ENST00000251849.4:c.1586C>T	p.Ser529Leu	p.S529L	ENST00000251849	NM_002880.3	529	tCg/tTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084172	47084172	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	86	332	0	ENST00000409792.3:c.7117A>G	p.Asn2373Asp	p.N2373D	ENST00000409792	NM_014159.6	2373	Aat/Gat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163605	47163605	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	34	288	0	ENST00000409792.3:c.2521T>G	p.Leu841Val	p.L841V	ENST00000409792	NM_014159.6	841	Ttg/Gtg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026810	71026810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	43	178	0	ENST00000318789.4:c.1412C>T	p.Ala471Val	p.A471V	ENST00000318789	NM_032682.5	471	gCa/gTa																																																																														
ATR	545	MSKCC	GRCh37	3	142212068	142212068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	135	421	0	ENST00000350721.4:c.5984A>C	p.Asn1995Thr	p.N1995T	ENST00000350721	NM_001184.3	1995	aAc/aCc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133463	55133463	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	82	370	0	ENST00000257290.5:c.767A>C	p.Lys256Thr	p.K256T	ENST00000257290	NM_006206.4	256	aAa/aCa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133609	55133609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	94	434	0	ENST00000257290.5:c.913G>A	p.Val305Ile	p.V305I	ENST00000257290	NM_006206.4	305	Gtc/Atc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955584	55955584	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	123	474	0	ENST00000263923.4:c.3361G>T	p.Glu1121Ter	p.E1121*	ENST00000263923	NM_002253.2	1121	Gaa/Taa																																																																														
TET2	54790	MSKCC	GRCh37	4	106180899	106180899	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	20	310	0	ENST00000380013.4:c.3927T>G	p.Phe1309Leu	p.F1309L	ENST00000380013	NM_001127208.2	1309	ttT/ttG																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521256	187521256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	152	631	0	ENST00000441802.2:c.11899C>T	p.Pro3967Ser	p.P3967S	ENST00000441802	NM_005245.3	3967	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1293721	1293721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	188	1041	1	ENST00000310581.5:c.1280C>T	p.Ala427Val	p.A427V	ENST00000310581	NM_198253.2	427	gCc/gTc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177679	56177679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	74	334	1	ENST00000399503.3:c.2652C>A	p.Phe884Leu	p.F884L	ENST00000399503	NM_005921.1	884	ttC/ttA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591276	67591276	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	98	313	0	ENST00000274335.5:c.1774A>C	p.Lys592Gln	p.K592Q	ENST00000274335		592	Aag/Cag																																																																														
MSH3	4437	MSKCC	GRCh37	5	80064706	80064706	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	105	311	0	ENST00000265081.6:c.2137A>C	p.Lys713Gln	p.K713Q	ENST00000265081	NM_002439.4	713	Aaa/Caa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685247	86685247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	79	260	0	ENST00000274376.6:c.2963G>T	p.Arg988Ile	p.R988I	ENST00000274376	NM_002890.2	988	aGa/aTa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131925413	131925413	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	67	179	0	ENST00000265335.6:c.1336A>C	p.Lys446Gln	p.K446Q	ENST00000265335		446	Aaa/Caa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523065	176523065	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	139	734	0	ENST00000292408.4:c.1829A>G	p.His610Arg	p.H610R	ENST00000292408	NM_213647.1	610	cAc/cGc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562704	176562704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	103	546	0	ENST00000439151.2:c.600G>T	p.Glu200Asp	p.E200D	ENST00000439151	NM_022455.4	200	gaG/gaT																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056376	180056376	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	131	835	0	ENST00000261937.6:c.868G>C	p.Glu290Gln	p.E290Q	ENST00000261937	NM_182925.4	290	Gaa/Caa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816553	32816553	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	153	792	0	ENST00000354258.4:c.1622A>G	p.Tyr541Cys	p.Y541C	ENST00000354258	NM_000593.5	541	tAc/tGc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120630	94120630	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	75	378	0	ENST00000369303.4:c.421A>C	p.Asn141His	p.N141H	ENST00000369303	NM_004440.3	141	Aac/Cac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120878	94120878	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	75	341	0	ENST00000369303.4:c.173T>G	p.Ile58Ser	p.I58S	ENST00000369303	NM_004440.3	58	aTt/aGt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117650561	117650561	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	110	443	0	ENST00000368508.3:c.5297A>C	p.Lys1766Thr	p.K1766T	ENST00000368508	NM_002944.2	1766	aAa/aCa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718144	117718144	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	133	446	0	ENST00000368508.3:c.713A>C	p.Lys238Thr	p.K238T	ENST00000368508	NM_002944.2	238	aAa/aCa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001211	150001211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	103	477	0	ENST00000253339.5:c.2393G>A	p.Gly798Asp	p.G798D	ENST00000253339		798	gGc/gAc																																																																														
PARK2	0	MSKCC	GRCh37	6	162622195	162622195	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	96	419	0	ENST00000366898.1:c.502A>G	p.Thr168Ala	p.T168A	ENST00000366898	NM_004562.2	168	Acc/Gcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268891	55268891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	149	685	0	ENST00000275493.2:c.2957G>T	p.Arg986Ile	p.R986I	ENST00000275493	NM_005228.3	986	aGa/aTa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509510	106509510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	117	530	0	ENST00000359195.3:c.1504C>T	p.Leu502Phe	p.L502F	ENST00000359195	NM_002649.2	502	Ctc/Ttc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509810	106509810	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	120	580	1	ENST00000359195.3:c.1804G>T	p.Glu602Ter	p.E602*	ENST00000359195	NM_002649.2	602	Gaa/Taa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106519967	106519967	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	35	182	1	ENST00000359195.3:c.2395G>T	p.Glu799Ter	p.E799*	ENST00000359195	NM_002649.2	799	Gaa/Taa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106519993	106519993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	41	217	0	ENST00000359195.3:c.2421G>T	p.Lys807Asn	p.K807N	ENST00000359195	NM_002649.2	807	aaG/aaT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545706	106545706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	136	463	0	ENST00000359195.3:c.3183G>T	p.Glu1061Asp	p.E1061D	ENST00000359195	NM_002649.2	1061	gaG/gaT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860073	151860073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	89	318	0	ENST00000262189.6:c.10589C>A	p.Ser3530Tyr	p.S3530Y	ENST00000262189	NM_170606.2	3530	tCt/tAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151960154	151960154	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	111	359	0	ENST00000262189.6:c.1246T>G	p.Phe416Val	p.F416V	ENST00000262189	NM_170606.2	416	Ttt/Gtt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133164	38133164	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	116	408	0	ENST00000317025.8:c.4309G>T	p.Glu1437Ter	p.E1437*	ENST00000317025	NM_023034.1	1437	Gaa/Taa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205105	38205105	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	169	503	0	ENST00000317025.8:c.585A>C	p.Glu195Asp	p.E195D	ENST00000317025	NM_023034.1	195	gaA/gaC																																																																														
PREX2	80243	MSKCC	GRCh37	8	68972919	68972919	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	78	355	0	ENST00000288368.4:c.1244T>G	p.Phe415Cys	p.F415C	ENST00000288368	NM_024870.2	415	tTt/tGt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8375954	8375954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	23	297	0	ENST00000356435.5:c.4643C>T	p.Pro1548Leu	p.P1548L	ENST00000356435		1548	cCg/cTg																																																																														
TEK	7010	MSKCC	GRCh37	9	27158028	27158028	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	121	607	0	ENST00000380036.4:c.252A>C	p.Lys84Asn	p.K84N	ENST00000380036	NM_000459.3	84	aaA/aaC																																																																														
TEK	7010	MSKCC	GRCh37	9	27197366	27197366	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	125	539	0	ENST00000380036.4:c.1678A>C	p.Asn560His	p.N560H	ENST00000380036	NM_000459.3	560	Aat/Cat																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966709	36966709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	88	421	0	ENST00000358127.4:c.617C>T	p.Ser206Phe	p.S206F	ENST00000358127	NM_001280556.1	206	tCt/tTt																																																																														
FANCC	2176	MSKCC	GRCh37	9	97897632	97897632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	101	326	0	ENST00000289081.3:c.839C>T	p.Ser280Leu	p.S280L	ENST00000289081	NM_000136.2	280	tCg/tTg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248047	110248047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	37	407	0	ENST00000374672.4:c.1425G>T	p.Met475Ile	p.M475I	ENST00000374672	NM_004235.4	475	atG/atT																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250023	110250023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	46	819	1	ENST00000374672.4:c.652C>T	p.Pro218Ser	p.P218S	ENST00000374672	NM_004235.4	218	Ccg/Tcg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127933424	127933424	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	129	487	0	ENST00000373547.4:c.111A>C	p.Glu37Asp	p.E37D	ENST00000373547	NM_002721.4	37	gaA/gaC																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222803	53222803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	176	853	0	ENST00000375401.3:c.4133C>T	p.Ser1378Phe	p.S1378F	ENST00000375401	NM_004187.3	1378	tCc/tTc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225220	53225220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	150	604	0	ENST00000375401.3:c.2998G>A	p.Ala1000Thr	p.A1000T	ENST00000375401	NM_004187.3	1000	Gcc/Acc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53243918	53243918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	181	832	0	ENST00000375401.3:c.1075C>T	p.Pro359Ser	p.P359S	ENST00000375401	NM_004187.3	359	Cct/Tct																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410735	63410735	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	127	617	0	ENST00000330258.3:c.2432T>C	p.Ile811Thr	p.I811T	ENST00000330258	NM_152424.3	811	aTc/aCc																																																																														
MED12	9968	MSKCC	GRCh37	X	70345318	70345318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	50	680	0	ENST00000374080.3:c.2344C>A	p.Leu782Met	p.L782M	ENST00000374080		782	Ctg/Atg																																																																														
ATRX	546	MSKCC	GRCh37	X	76890140	76890140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	81	470	0	ENST00000373344.5:c.4754C>A	p.Ser1585Tyr	p.S1585Y	ENST00000373344	NM_000489.3	1585	tCt/tAt																																																																														
XIAP	331	MSKCC	GRCh37	X	123034418	123034418	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	32	292	0	ENST00000355640.3:c.1175T>G	p.Ile392Arg	p.I392R	ENST00000355640		392	aTa/aGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	23	619	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922685	44922685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	21	316	0	ENST00000377967.4:c.1546G>T	p.Ala516Ser	p.A516S	ENST00000377967	NM_021140.2	516	Gca/Tca																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0050437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	131	378	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	216	687	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	125	340	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	133	315	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	107	267	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
STAT3	6774	MSKCC	GRCh37	17	40468838	40468839	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCACCATTA			P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	153	407	0	ENST00000264657.5:c.2217_2225dup	p.Gly741_Glu742insAspAsnGly	p.G741_E742insDNG	ENST00000264657	NM_139276.2	742	gaa/gaTAATGGTGAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218392	36218392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	279	751	1	ENST00000222270.7:c.4171G>A	p.Gly1391Arg	p.G1391R	ENST00000222270	NM_014727.1	1391	Gga/Aga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251643	212251643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	109	408	1	ENST00000342788.4:c.3416G>A	p.Arg1139Gln	p.R1139Q	ENST00000342788	NM_005235.2	1139	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541661	187541661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	60	297	0	ENST00000441802.2:c.6079C>A	p.Arg2027Ser	p.R2027S	ENST00000441802	NM_005245.3	2027	Cgc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175647	112175647	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	98	289	0	ENST00000257430.4:c.4356del	p.Pro1453LeufsTer20	p.P1453Lfs*20	ENST00000257430	NM_000038.5	1452	gtA/gt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12013691	12013691	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	145	449	0	ENST00000353533.5:c.634-1G>C		p.X212_splice	ENST00000353533	NM_003010.3	212																																																																															
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	98	293	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	309	727	0	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	198	560	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	141	459	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101574	27101574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	289	780	1	ENST00000324856.7:c.4856C>T	p.Pro1619Leu	p.P1619L	ENST00000324856	NM_006015.4	1619	cCa/cTa																																																																														
ATM	472	MSKCC	GRCh37	11	108154991	108154991	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	171	491	0	ENST00000278616.4:c.3784del	p.Arg1262GlufsTer7	p.R1262Efs*7	ENST00000278616	NM_000051.3	1262	Aga/ga																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970928	70970928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	214	749	0	ENST00000276594.2:c.1333G>A	p.Asp445Asn	p.D445N	ENST00000276594	NM_024504.3	445	Gac/Aac																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660508	227660508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	167	616	0	ENST00000305123.5:c.2947C>T	p.Pro983Ser	p.P983S	ENST00000305123	NM_005544.2	983	Ccc/Tcc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200001	128200001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			733	162	721	0	ENST00000341105.2:c.1304G>T	p.Gly435Val	p.G435V	ENST00000341105	NM_032638.4	435	gGa/gTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542642	187542642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	64	477	1	ENST00000441802.2:c.5098G>A	p.Glu1700Lys	p.E1700K	ENST00000441802	NM_005245.3	1700	Gaa/Aaa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86679544	86679544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			207	30	504	0	ENST00000274376.6:c.2705T>C	p.Leu902Pro	p.L902P	ENST00000274376	NM_002890.2	902	cTt/cCt																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020734	26020734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	53	314	0	ENST00000357647.3:c.17A>T	p.Gln6Leu	p.Q6L	ENST00000357647	NM_003529.2	6	cAa/cTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485234	8485234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	65	519	0	ENST00000356435.5:c.3146C>A	p.Pro1049His	p.P1049H	ENST00000356435		1049	cCt/cAt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514499	103514499	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	37	343	0	ENST00000355739.4:c.1000G>T	p.Glu334Ter	p.E334*	ENST00000355739	NM_000123.3	334	Gag/Tag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103520541	103520541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	25	392	0	ENST00000355739.4:c.2612G>T	p.Cys871Phe	p.C871F	ENST00000355739	NM_000123.3	871	tGt/tTt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225398	2225398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			492	197	692	0	ENST00000326181.6:c.1483G>T	p.Gly495Cys	p.G495C	ENST00000326181	NM_032271.2	495	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	202	609	0	ENST00000269305.4:c.993G>T	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	187	817	2	ENST00000171111.5:c.1238G>A	p.Arg413His	p.R413H	ENST00000171111	NM_203500.1	413	cGt/cAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121151	11121151	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	177	836	0	ENST00000344626.4:c.2218G>T	p.Glu740Ter	p.E740*	ENST00000344626	NM_003072.3	740	Gag/Tag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909559	50909559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			711	89	652	0	ENST00000440232.2:c.1363G>T	p.Val455Leu	p.V455L	ENST00000440232	NM_002691.3	455	Gtg/Ttg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739036	40739036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	147	650	0	ENST00000373198.4:c.3248G>C	p.Gly1083Ala	p.G1083A	ENST00000373198	NM_133170.3	1083	gGc/gCc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295810	212295810	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	51	536	0	ENST00000342788.4:c.2503del	p.Glu835LysfsTer16	p.E835Kfs*16	ENST00000342788	NM_005235.2	835	Gaa/aa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25457192	25457192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			655	140	768	1	ENST00000264709.3:c.2695C>T	p.Arg899Cys	p.R899C	ENST00000264709	NM_175629.2	899	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	68	545	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	68	545	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	68	545	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223028	41223029	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			704	241	705	1	ENST00000357654.3:c.4902_4903delinsTT	p.Arg1634_Glu1635delinsSerTer	p.R1634_E1635delinsS*	ENST00000357654	NM_007294.3	1634	agGGag/agTTag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821382	72821382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs774585182		P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			529	33	535	0	ENST00000268489.5:c.10793del	p.Pro3598LeufsTer96	p.P3598Lfs*96	ENST00000268489	NM_006885.3	3598	cCt/ct																																																																														
PARK2	0	MSKCC	GRCh37	6	161969933	161969933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	66	616	0	ENST00000366898.1:c.1036G>T	p.Asp346Tyr	p.D346Y	ENST00000366898	NM_004562.2	346	Gac/Tac																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123324079	123324079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	50	541	0	ENST00000358487.5:c.391G>A	p.Gly131Arg	p.G131R	ENST00000358487	NM_000141.4	131	Gga/Aga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256282	16256282	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	67	620	3	ENST00000375759.3:c.3547G>T	p.Glu1183Ter	p.E1183*	ENST00000375759	NM_015001.2	1183	Gaa/Taa																																																																														
WT1	7490	MSKCC	GRCh37	11	32456819	32456819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	100	607	0	ENST00000332351.3:c.73C>A	p.Leu25Ile	p.L25I	ENST00000332351	NM_024426.4	25	Cta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443490	49443490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	129	612	0	ENST00000301067.7:c.3881C>A	p.Ser1294Tyr	p.S1294Y	ENST00000301067	NM_003482.3	1294	tCc/tAc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28624324	28624324	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	31	580	0	ENST00000241453.7:c.650A>C	p.Glu217Ala	p.E217A	ENST00000241453	NM_004119.2	217	gAg/gCg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198270046	198270046	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	36	475	0	ENST00000335508.6:c.1390C>G	p.Leu464Val	p.L464V	ENST00000335508	NM_012433.2	464	Ctt/Gtt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101110	41101110	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	164	706	0	ENST00000373198.4:c.1246C>G	p.Arg416Gly	p.R416G	ENST00000373198	NM_133170.3	416	Cgc/Ggc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911285	29911285	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	27	462	0	ENST00000376809.5:c.584A>T	p.Tyr195Phe	p.Y195F	ENST00000376809	NM_002116.7	195	tAc/tTc																																																																														
SMO	6608	MSKCC	GRCh37	7	128846425	128846425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	139	509	0	ENST00000249373.3:c.1261C>G	p.Arg421Gly	p.R421G	ENST00000249373	NM_005631.4	421	Cga/Gga																																																																														
ATRX	546	MSKCC	GRCh37	X	76778786	76778786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	35	630	0	ENST00000373344.5:c.6793G>A	p.Glu2265Lys	p.E2265K	ENST00000373344	NM_000489.3	2265	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76855265	76855266	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			160	18	429	1	ENST00000373344.5:c.5721_5722delinsTA	p.Met1907_Asp1908delinsIleAsn	p.M1907_D1908delinsIN	ENST00000373344	NM_000489.3	1907	atGGat/atTAat																																																																														
ATRX	546	MSKCC	GRCh37	X	76938268	76938268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	73	674	0	ENST00000373344.5:c.2480G>A	p.Ser827Asn	p.S827N	ENST00000373344	NM_000489.3	827	aGc/aAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76939457	76939457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	85	678	0	ENST00000373344.5:c.1291G>A	p.Glu431Lys	p.E431K	ENST00000373344	NM_000489.3	431	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046409	69046410	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	AGA			P-0009110-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	101	720	0	ENST00000288368.4:c.3882_3883delinsAGA	p.Asn1296LysfsTer2	p.N1296Kfs*2	ENST00000288368	NM_024870.2	1294	aaGGaa/aaAGAaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017319-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			475	48	543	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017319-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			416	30	550	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
CBL	867	MSKCC	GRCh37	11	119148991	119148991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs192712314		P-0017319-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			402	10	459	0	ENST00000264033.4:c.1211G>A	p.Cys404Tyr	p.C404Y	ENST00000264033	NM_005188.3	404	tGt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577521	7577521	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017319-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			479	22	636	0	ENST00000269305.4:c.760A>T	p.Ile254Phe	p.I254F	ENST00000269305	NM_001126112.2	254	Atc/Ttc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0024333-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			298	339	441	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913407		P-0024333-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			164	84	339	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241704	55241704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024333-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			819	289	675	0	ENST00000275493.2:c.2152C>G	p.Leu718Val	p.L718V	ENST00000275493	NM_005228.3	718	Ctg/Gtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0033313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	396	490	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			15	235	709	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156732	20156732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	169	235	0	ENST00000379607.5:c.25G>C	p.Gly9Arg	p.G9R	ENST00000379607	NM_001412.3	9	Ggt/Cgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105831	27105831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	245	427	0	ENST00000324856.7:c.5444del	p.Lys1815ArgfsTer68	p.K1815Rfs*68	ENST00000324856	NM_006015.4	1814	gtA/gt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65311260	65311260	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	184	360	0	ENST00000342505.4:c.2051A>T	p.Asp684Val	p.D684V	ENST00000342505	NM_002227.2	684	gAt/gTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143991	11143991	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	280	451	0	ENST00000344626.4:c.3572A>G	p.His1191Arg	p.H1191R	ENST00000344626	NM_003072.3	1191	cAc/cGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	103	415	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	239	665	1	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	100	659	0	ENST00000171111.5:c.997G>A	p.Gly333Ser	p.G333S	ENST00000171111	NM_203500.1	333	Ggc/Agc																																																																														
ATM	472	MSKCC	GRCh37	11	108138042	108138042	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	127	365	0	ENST00000278616.4:c.2611G>T	p.Glu871Ter	p.E871*	ENST00000278616	NM_000051.3	871	Gaa/Taa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858574	57858574	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	258	616	0	ENST00000228682.2:c.312C>G	p.Ser104Arg	p.S104R	ENST00000228682	NM_005269.2	104	agC/agG																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644821	67644821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	186	397	0	ENST00000264010.4:c.86G>T	p.Arg29Leu	p.R29L	ENST00000264010	NM_006565.3	29	cGg/cTg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990625	7990625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	146	418	1	ENST00000319144.4:c.136G>A	p.Ala46Thr	p.A46T	ENST00000319144	NM_001139.2	46	Gca/Aca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38955718	38955718	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	93	304	0	ENST00000357387.3:c.2588A>G	p.Tyr863Cys	p.Y863C	ENST00000357387	NM_152756.3	863	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112162822	112162822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	91	344	0	ENST00000257430.4:c.1426G>T	p.Ala476Ser	p.A476S	ENST00000257430	NM_000038.5	476	Gca/Tca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376034	8376034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	14	329	0	ENST00000356435.5:c.4563T>A	p.Asp1521Glu	p.D1521E	ENST00000356435		1521	gaT/gaA																																																																														
PAX5	5079	MSKCC	GRCh37	9	37006481	37006481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	90	292	0	ENST00000358127.4:c.464G>T	p.Ser155Ile	p.S155I	ENST00000358127	NM_001280556.1	155	aGt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	63	445	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0049511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	21	195	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
BRAF	673	MSKCC	GRCh37	7	140449139	140449139	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	65	347	0	ENST00000288602.6:c.1940A>G	p.Tyr647Cys	p.Y647C	ENST00000288602	NM_004333.4	647	tAt/tGt																																																																														
MED12	9968	MSKCC	GRCh37	X	70357793	70357793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0010976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	102	649	0	ENST00000374080.3:c.6044G>C	p.Arg2015Thr	p.R2015T	ENST00000374080		2015	aGg/aCg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	frameshift_variant	Frame_Shift_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	GCAA			P-0010976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	50	363	0	ENST00000275493.2:c.2238_2252delinsGCAA	p.Leu747GlnfsTer12	p.L747Qfs*12	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaGCAAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0014769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			731	112	855	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	67	663	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242479	+	frameshift_variant	Frame_Shift_Del	DEL	TTAAGAGAAGC	TTAAGAGAAGC	C			P-0014769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	53	472	0	ENST00000275493.2:c.2239_2248del	p.Leu747GlnfsTer16	p.L747Qfs*16	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCa/Ca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	75	311	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			204	317	584	1	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504584	103504584	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	109	330	1	ENST00000355739.4:c.205C>T	p.Arg69Ter	p.R69*	ENST00000355739	NM_000123.3	69	Cga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027380	48027380	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	80	340	0	ENST00000234420.5:c.2258C>G	p.Ser753Cys	p.S753C	ENST00000234420	NM_000179.2	753	tCt/tGt																																																																														
RB1	5925	MSKCC	GRCh37	13	48921999	48921999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	220	288	0	ENST00000267163.4:c.539C>T	p.Ser180Leu	p.S180L	ENST00000267163	NM_000321.2	180	tCg/tTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242477	+	frameshift_variant	Frame_Shift_Del	DEL	TTAAGAGAA	TTAAGAGAA	C			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	170	439	0	ENST00000275493.2:c.2239_2247delinsC	p.Leu747ArgfsTer13	p.L747Rfs*13	ENST00000275493	NM_005228.3	747	TTAAGAGAA/C																																																																														
TET1	80312	MSKCC	GRCh37	10	70412286	70412286	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	182	276	0	ENST00000373644.4:c.4396A>T	p.Ile1466Leu	p.I1466L	ENST00000373644	NM_030625.2	1466	Ata/Tta																																																																														
MED12	9968	MSKCC	GRCh37	X	70361751	70361751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048564-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	329	698	2	ENST00000374080.3:c.6427C>T	p.Gln2143Ter	p.Q2143*	ENST00000374080		2143	Cag/Tag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001243-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			722	17	253	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
NBN	0	MSKCC	GRCh37	8	90996767	90996767	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001243-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	557	488	0	ENST00000265433.3:c.23C>A	p.Ala8Glu	p.A8E	ENST00000265433	NM_002485.4	8	gCg/gAg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63816919	63816919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001243-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			311	211	144	0	ENST00000279873.7:c.890A>G	p.Asn297Ser	p.N297S	ENST00000279873	NM_032199.2	297	aAc/aGc																																																																														
SOX9	0	MSKCC	GRCh37	17	70119912	70119912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001243-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			779	56	345	0	ENST00000245479.2:c.914G>T	p.Gly305Val	p.G305V	ENST00000245479	NM_000346.3	305	gGg/gTg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222741	53222741	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001243-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1301	176	429	0	ENST00000375401.3:c.4195T>A	p.Leu1399Met	p.L1399M	ENST00000375401	NM_004187.3	1399	Ttg/Atg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0001243-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			669	224	285	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
FGFR1	0	MSKCC	GRCh37	8	38272308	38272308	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	57	595	0	ENST00000425967.3:c.2059A>G	p.Lys687Glu	p.K687E	ENST00000425967	NM_001174067.1	687	Aag/Gag																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8075398	8075398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	16	227	0	ENST00000377482.5:c.172T>C	p.Ser58Pro	p.S58P	ENST00000377482	NM_018948.3	58	Tct/Cct																																																																														
GLI1	0	MSKCC	GRCh37	12	57858974	57858974	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	152	606	1	ENST00000228682.2:c.470A>G	p.His157Arg	p.H157R	ENST00000228682	NM_005269.2	157	cAt/cGt																																																																														
ERCC4	0	MSKCC	GRCh37	16	14021962	14021962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	118	552	2	ENST00000311895.7:c.662C>T	p.Thr221Ile	p.T221I	ENST00000311895	NM_005236.2	221	aCc/aTc																																																																														
CIC	0	MSKCC	GRCh37	19	42794641	42794641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	49	581	0	ENST00000575354.2:c.1721C>T	p.Pro574Leu	p.P574L	ENST00000575354	NM_015125.3	574	cCa/cTa																																																																														
SETD2	0	MSKCC	GRCh37	3	47125811	47125811	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	94	293	0	ENST00000409792.3:c.5459T>C	p.Val1820Ala	p.V1820A	ENST00000409792	NM_014159.6	1820	gTa/gCa																																																																														
FAT1	0	MSKCC	GRCh37	4	187557833	187557833	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	117	460	0	ENST00000441802.2:c.3878A>G	p.Asp1293Gly	p.D1293G	ENST00000441802	NM_005245.3	1293	gAc/gGc																																																																														
LATS1	0	MSKCC	GRCh37	6	150001182	150001182	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	109	542	0	ENST00000253339.5:c.2422T>C	p.Tyr808His	p.Y808H	ENST00000253339		808	Tac/Cac																																																																														
MYC	0	MSKCC	GRCh37	8	128750686	128750686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	41	543	1	ENST00000377970.2:c.223C>T	p.Pro75Ser	p.P75S	ENST00000377970	NM_002467.4	75	Ccc/Tcc																																																																														
KLF4	0	MSKCC	GRCh37	9	110249830	110249830	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	196	610	0	ENST00000374672.4:c.845T>C	p.Val282Ala	p.V282A	ENST00000374672	NM_004235.4	282	gTc/gCc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139410435	139410435	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0015914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	145	562	0	ENST00000277541.6:c.1667A>G	p.Glu556Gly	p.E556G	ENST00000277541	NM_017617.3	556	gAa/gGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	307	639	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
TSC2	0	MSKCC	GRCh37	16	2106696	2106696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	542	738	0	ENST00000219476.3:c.700G>A	p.Glu234Lys	p.E234K	ENST00000219476	NM_000548.3	234	Gag/Aag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	51	451	0	ENST00000342988.3:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000342988	NM_005359.5	363	tGt/tTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	12	112	1	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																														
KDM5A	0	MSKCC	GRCh37	12	419049	419049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	48	816	0	ENST00000399788.2:c.3298G>A	p.Glu1100Lys	p.E1100K	ENST00000399788	NM_001042603.1	1100	Gaa/Aaa																																																																														
AR	0	MSKCC	GRCh37	X	66765261	66765261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	391	287	1	ENST00000374690.3:c.273G>T	p.Gln91His	p.Q91H	ENST00000374690	NM_000044.3	91	caG/caT																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9783181	9783181	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	113	496	0	ENST00000377346.4:c.2427-2A>G		p.X809_splice	ENST00000377346	NM_005026.3	809																																																																															
ARID2	0	MSKCC	GRCh37	12	46246395	46246395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	14	499	0	ENST00000334344.6:c.4489C>G	p.Pro1497Ala	p.P1497A	ENST00000334344	NM_152641.2	1497	Cct/Gct																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912555	32912555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	64	627	0	ENST00000380152.3:c.4063G>A	p.Asp1355Asn	p.D1355N	ENST00000380152		1355	Gac/Aac																																																																														
IDH2	0	MSKCC	GRCh37	15	90645522	90645522	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	142	72	0	ENST00000330062.3:c.101A>T	p.Gln34Leu	p.Q34L	ENST00000330062	NM_002168.2	34	cAg/cTg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99442747	99442747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	52	778	0	ENST00000268035.6:c.1144G>A	p.Glu382Lys	p.E382K	ENST00000268035	NM_000875.3	382	Gag/Aag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599955	10599955	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	406	891	0	ENST00000171111.5:c.1621del	p.Thr541GlnfsTer7	p.T541Qfs*7	ENST00000171111	NM_203500.1	541	Aca/ca																																																																														
PAK7	0	MSKCC	GRCh37	20	9538294	9538294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	20	575	0	ENST00000353224.5:c.1704C>A	p.Asp568Glu	p.D568E	ENST00000353224	NM_177990.2	568	gaC/gaA																																																																														
SRC	0	MSKCC	GRCh37	20	36026197	36026197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1610	966	852	2	ENST00000358208.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000358208		267	Cgg/Tgg																																																																														
EP300	0	MSKCC	GRCh37	22	41574155	41574155	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	329	572	0	ENST00000263253.7:c.6440A>T	p.Gln2147Leu	p.Q2147L	ENST00000263253	NM_001429.3	2147	cAg/cTg																																																																														
ATR	0	MSKCC	GRCh37	3	142176566	142176566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	80	697	0	ENST00000350721.4:c.7535C>A	p.Pro2512Gln	p.P2512Q	ENST00000350721	NM_001184.3	2512	cCa/cAa																																																																														
TET2	0	MSKCC	GRCh37	4	106156189	106156189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	24	503	2	ENST00000380013.4:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000380013	NM_001127208.2	364	Ggt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112137040	112137040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	61	617	0	ENST00000257430.4:c.794G>C	p.Gly265Ala	p.G265A	ENST00000257430	NM_000038.5	265	gGa/gCa																																																																														
EZH2	0	MSKCC	GRCh37	7	148511131	148511131	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	31	402	0	ENST00000320356.2:c.1771C>G	p.Leu591Val	p.L591V	ENST00000320356	NM_004456.4	591	Ctt/Gtt																																																																														
PREX2	0	MSKCC	GRCh37	8	69129953	69129953	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	38	284	0	ENST00000288368.4:c.4707G>T	p.Gln1569His	p.Q1569H	ENST00000288368	NM_024870.2	1569	caG/caT																																																																														
AMER1	0	MSKCC	GRCh37	X	63411263	63411263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	154	412	2	ENST00000330258.3:c.1904G>A	p.Cys635Tyr	p.C635Y	ENST00000330258	NM_152424.3	635	tGt/tAt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3801803	3801803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	51	578	0	ENST00000262367.5:c.3703C>T	p.His1235Tyr	p.H1235Y	ENST00000262367	NM_004380.2	1235	Cat/Tat																																																																														
MGA	0	MSKCC	GRCh37	15	41988560	41988560	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	120	712	0	ENST00000219905.7:c.1352C>G	p.Ser451Ter	p.S451*	ENST00000219905	NM_001164273.1	451	tCa/tGa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0022650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	18	496	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
GLI1	0	MSKCC	GRCh37	12	57864616	57864616	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	362	870	0	ENST00000228682.2:c.2093T>A	p.Met698Lys	p.M698K	ENST00000228682	NM_005269.2	698	aTg/aAg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154350	2154350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			915	595	467	0	ENST00000434045.2:c.578G>A	p.Arg193His	p.R193H	ENST00000434045	NM_001127598.1	193	cGc/cAc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514866	103514866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	265	66	0	ENST00000355739.4:c.1367A>G	p.Glu456Gly	p.E456G	ENST00000355739	NM_000123.3	456	gAg/gGg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472510	88472510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			786	545	431	1	ENST00000360948.2:c.2045C>A	p.Thr682Asn	p.T682N	ENST00000360948	NM_001012338.2	682	aCc/aAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554266	63554266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1024	459	515	0	ENST00000307078.5:c.473G>A	p.Arg158Lys	p.R158K	ENST00000307078	NM_004655.3	158	aGa/aAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1175	526	504	0	ENST00000374080.3:c.131G>C	p.Gly44Ala	p.G44A	ENST00000374080		44	gGt/gCt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874521	151874521	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	320	110	0	ENST00000262189.6:c.8017G>C	p.Asp2673His	p.D2673H	ENST00000262189	NM_170606.2	2673	Gat/Cat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95579502	95579502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	312	86	0	ENST00000343455.3:c.1967G>A	p.Arg656Gln	p.R656Q	ENST00000343455	NM_177438.2	656	cGa/cAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593631	55593654	+	inframe_deletion	In_Frame_Del	DEL	ACAATTATGTTTACATAGACCCAA	ACAATTATGTTTACATAGACCCAA	-			P-0006120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	190	438	0	ENST00000288135.5:c.1697_1720del	p.Asn566_Pro573del	p.N566_P573del	ENST00000288135	NM_000222.2	566	aACAATTATGTTTACATAGACCCAAca/aca																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2213973	2213979	+	frameshift_variant	Frame_Shift_Del	DEL	AATCTTC	AATCTTC	-			P-0006120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	42	515	0	ENST00000326181.6:c.52_58del	p.Asn18ProfsTer108	p.N18Pfs*108	ENST00000326181	NM_032271.2	18	AATCTTCcc/cc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125269	47125269	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	207	730	1	ENST00000409792.3:c.6001A>T	p.Lys2001Ter	p.K2001*	ENST00000409792	NM_014159.6	2001	Aaa/Taa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920432	134920432	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	121	627	0	ENST00000398015.3:c.2247C>G	p.Asn749Lys	p.N749K	ENST00000398015	NM_004441.4	749	aaC/aaG																																																																														
KIT	3815	MSKCC	GRCh37	4	55593609	55593653	+	inframe_deletion	In_Frame_Del	DEL	GTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCA	GTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCA	-			P-0008084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	179	776	0	ENST00000288135.5:c.1675_1719del	p.Val559_Pro573del	p.V559_P573del	ENST00000288135	NM_000222.2	559	GTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCA/-																																																																														
KIT	3815	MSKCC	GRCh37	4	55593629	55593652	+	inframe_deletion	In_Frame_Del	DEL	AAACAATTATGTTTACATAGACCC	AAACAATTATGTTTACATAGACCC	-			P-0012403-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			537	120	458	0	ENST00000288135.5:c.1697_1720del	p.Asn566_Pro573del	p.N566_P573del	ENST00000288135	NM_000222.2	565	ggAAACAATTATGTTTACATAGACCCa/gga																																																																														
KIT	3815	MSKCC	GRCh37	4	55593656	55593657	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAACTTCCTTATGATCACAAATGGGAGTTTCCCAGAAACAGGCTGAGTTTTGGT			P-0019583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	203	656	0	ENST00000288135.5:c.1725_1774+4dup		p.Q575_G592dup	ENST00000288135	NM_000222.2	575	-/CAACTTCCTTATGATCACAAATGGGAGTTTCCCAGAAACAGGCTGAGTTTTGGT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857538	9857538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	22	470	0	ENST00000330684.3:c.3863G>A	p.Arg1288His	p.R1288H	ENST00000330684	NM_001134407.1	1288	cGt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593602	55593652	+	inframe_deletion	In_Frame_Del	DEL	GTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCC	GTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCC	-			P-0021978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	59	379	0	ENST00000288135.5:c.1668_1718del	p.Trp557_Pro573del	p.W557_P573del	ENST00000288135	NM_000222.2	556	caGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCa/caa																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	234	482	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430422	181430422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	184	677	2	ENST00000325404.1:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000325404	NM_003106.3	92	Gac/Tac																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346947	73346947	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	49	345	0	ENST00000377767.4:c.1270G>T	p.Gly424Ter	p.G424*	ENST00000377767	NM_014953.3	424	Gga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390201	89390201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	37	368	0	ENST00000336596.2:c.950C>A	p.Pro317His	p.P317H	ENST00000336596	NM_005233.5	317	cCt/cAt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894934	101894934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	79	399	0	ENST00000374994.4:c.487G>T	p.Asp163Tyr	p.D163Y	ENST00000374994	NM_004612.2	163	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	37	527	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264360	30264360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	21	164	0	ENST00000322652.5:c.95C>T	p.Ala32Val	p.A32V	ENST00000322652	NM_015355.2	32	gCg/gTg																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46546326	46546326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	63	444	0	ENST00000262741.5:c.203G>T	p.Gly68Val	p.G68V	ENST00000262741	NM_003629.3	68	gGg/gTg																																																																														
FH	2271	MSKCC	GRCh37	1	241671911	241671911	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	31	470	0	ENST00000366560.3:c.730C>G	p.Leu244Val	p.L244V	ENST00000366560	NM_000143.3	244	Ctt/Gtt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941007	71941007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	59	912	1	ENST00000298229.2:c.883C>T	p.Pro295Ser	p.P295S	ENST00000298229	NM_001567.3	295	Cca/Tca																																																																														
FLT3	2322	MSKCC	GRCh37	13	28624231	28624231	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	44	472	0	ENST00000241453.7:c.742+1G>T		p.X248_splice	ENST00000241453	NM_004119.2	248																																																																															
TSHR	7253	MSKCC	GRCh37	14	81558891	81558891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	134	511	0	ENST00000298171.2:c.484C>A	p.Pro162Thr	p.P162T	ENST00000298171	NM_000369.2	162	Cct/Act																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246696	41246696	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	52	498	0	ENST00000357654.3:c.852G>C	p.Gln284His	p.Q284H	ENST00000357654	NM_007294.3	284	caG/caC																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214607	5214607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	144	643	0	ENST00000357368.4:c.4459A>G	p.Ile1487Val	p.I1487V	ENST00000357368	NM_002850.3	1487	Atc/Gtc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99155386	99155386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	30	523	0	ENST00000074304.5:c.612G>T	p.Glu204Asp	p.E204D	ENST00000074304	NM_001134224.1	204	gaG/gaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739113	40739113	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	319	556	0	ENST00000373198.4:c.3171G>C	p.Glu1057Asp	p.E1057D	ENST00000373198	NM_133170.3	1057	gaG/gaC																																																																														
EP300	2033	MSKCC	GRCh37	22	41564533	41564533	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	42	564	0	ENST00000263253.7:c.3955G>C	p.Gly1319Arg	p.G1319R	ENST00000263253	NM_001429.3	1319	Gga/Cga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713741	30713742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	33	461	0	ENST00000359013.4:c.1146dup	p.Ile383AspfsTer7	p.I383Dfs*7	ENST00000359013	NM_001024847.2	381	cgg/cGgg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799503	72799503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	64	692	0	ENST00000325599.8:c.1666A>G	p.Lys556Glu	p.K556E	ENST00000325599	NM_018130.2	556	Aag/Gag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957019	1957019	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	97	527	0	ENST00000382891.5:c.2470C>T	p.Arg824Ter	p.R824*	ENST00000382891	NM_133335.3	824	Cga/Tga																																																																														
KIT	3815	MSKCC	GRCh37	4	55564574	55564574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	146	624	0	ENST00000288135.5:c.462G>C	p.Lys154Asn	p.K154N	ENST00000288135	NM_000222.2	154	aaG/aaC																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31451746	31451746	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	68	295	0	ENST00000344624.3:c.2576del	p.His859LeufsTer3	p.H859Lfs*3	ENST00000344624		859	cAt/ct																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876395	35876395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	43	579	0	ENST00000303115.3:c.1187A>G	p.Asn396Ser	p.N396S	ENST00000303115	NM_002185.3	396	aAt/aGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151853063	151853063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	116	437	0	ENST00000262189.6:c.11892G>T	p.Gln3964His	p.Q3964H	ENST00000262189	NM_170606.2	3964	caG/caT																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992720	68992720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	120	652	1	ENST00000288368.4:c.1685G>T	p.Arg562Leu	p.R562L	ENST00000288368	NM_024870.2	562	cGt/cTt																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868981	117868981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	59	427	0	ENST00000297338.2:c.718G>T	p.Gly240Cys	p.G240C	ENST00000297338	NM_006265.2	240	Ggt/Tgt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742488	145742501	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTGGCGGCTCC	GCCCTGGCGGCTCC	-			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	43	718	0	ENST00000428558.2:c.287_300del	p.Arg96LeufsTer36	p.R96Lfs*36	ENST00000428558	NM_004260.3	96	cGGAGCCGCCAGGGC/c																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486097	8486097	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	70	496	0	ENST00000356435.5:c.2720T>A	p.Met907Lys	p.M907K	ENST00000356435		907	aTg/aAg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11031120	11031120	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	63	650	0	ENST00000327064.4:c.1205T>A	p.Val402Glu	p.V402E	ENST00000327064	NM_199141.1	402	gTg/gAg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366187	15366187	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	140	634	0	ENST00000263377.2:c.1968del	p.Phe656LeufsTer4	p.F656Lfs*4	ENST00000263377	NM_058243.2	656	ttT/tt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164298	47164298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	130	358	0	ENST00000409792.3:c.1828G>T	p.Glu610Ter	p.E610*	ENST00000409792	NM_014159.6	610	Gaa/Taa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593648	55593649	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCAACACAACTTCCTTATGATC			P-0030447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	174	431	0	ENST00000288135.5:c.1717_1740dup	p.Pro573_His580dup	p.P573_H580dup	ENST00000288135	NM_000222.2	573	gac/gACCCAACACAACTTCCTTATGATCac																																																																														
KIT	3815	MSKCC	GRCh37	4	55593648	55593649	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCAACACAACTTCCTTATGATC			P-0035148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	107	537	0	ENST00000288135.5:c.1717_1740dup	p.Pro573_His580dup	p.P573_H580dup	ENST00000288135	NM_000222.2	573	gac/gACCCAACACAACTTCCTTATGATCac																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743763	46743763	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	224	684	0	ENST00000371975.4:c.2053G>C	p.Val685Leu	p.V685L	ENST00000371975	NM_003579.3	685	Gtc/Ctc																																																																														
MAX	4149	MSKCC	GRCh37	14	65560495	65560495	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	218	561	0	ENST00000358664.4:c.102delA	p.Lys34AsnfsTer31	p.K34Nfs*31	ENST00000358664	NM_002382.4	34	aaA/aa																																																																														
NF2	4771	MSKCC	GRCh37	22	30077589	30077589	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0035148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	13	319	0	ENST00000338641.4:c.1736A>T	p.Lys579Met	p.K579M	ENST00000338641	NM_000268.3	579	aAg/aTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47059132	47059132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	197	505	0	ENST00000409792.3:c.7529G>T	p.Arg2510Leu	p.R2510L	ENST00000409792	NM_014159.6	2510	cGc/cTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55599341	55599341	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	162	527	1	ENST00000288135.5:c.2467T>A	p.Tyr823Asn	p.Y823N	ENST00000288135	NM_000222.2	823	Tat/Aat																																																																														
KIT	3815	MSKCC	GRCh37	4	55593650	55593651	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCAACACAACTTCCTTATGATCACAAATGGGAGTTTCCCAGA			P-0035810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	135	390	0	ENST00000288135.5:c.1717_1758dup	p.Pro573_Arg586dup	p.P573_R586dup	ENST00000288135	NM_000222.2	573	-/CCAACACAACTTCCTTATGATCACAAATGGGAGTTTCCCAGA																																																																														
KIT	3815	MSKCC	GRCh37	4	55593599	55593652	+	inframe_deletion	In_Frame_Del	DEL	ACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCC	ACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCC	-			P-0037697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	24	474	0	ENST00000288135.5:c.1666_1719del	p.Gln556_Pro573del	p.Q556_P573del	ENST00000288135	NM_000222.2	555	gtACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCa/gta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	392	407	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	146	311	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	142	343	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	283	561	0	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																																																														
ALK	238	MSKCC	GRCh37	2	29416559	29416559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	98	443	0	ENST00000389048.3:c.4394T>C	p.Val1465Ala	p.V1465A	ENST00000389048	NM_004304.4	1465	gTc/gCc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202801	128202801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	46	391	0	ENST00000341105.2:c.919C>T	p.Arg307Trp	p.R307W	ENST00000341105	NM_032638.4	307	Cgg/Tgg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146538	185146538	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	177	344	0	ENST00000265026.3:c.169A>T	p.Ile57Phe	p.I57F	ENST00000265026	NM_004721.4	57	Atc/Ttc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6045573	6045573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148270248		P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	70	304	0	ENST00000265849.7:c.113C>T	p.Ala38Val	p.A38V	ENST00000265849	NM_000535.5	38	gCg/gTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15995224	15995224	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	49	532	2	ENST00000268712.3:c.2969C>A	p.Ser990Tyr	p.S990Y	ENST00000268712	NM_006311.3	990	tCt/tAt																																																																														
TOP1	7150	MSKCC	GRCh37	20	39704899	39704900	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0010083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	269	636	1	ENST00000361337.2:c.245_246del	p.Lys82ArgfsTer30	p.K82Rfs*30	ENST00000361337	NM_003286.2	82	AAa/a																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073551	8073551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	65	318	0	ENST00000377482.5:c.1108G>A	p.Glu370Lys	p.E370K	ENST00000377482	NM_018948.3	370	Gaa/Aaa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777640	9777640	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148703447		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	199	623	0	ENST00000377346.4:c.976G>A	p.Glu326Lys	p.E326K	ENST00000377346	NM_005026.3	326	Gag/Aag																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783289	9783289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	180	558	0	ENST00000377346.4:c.2533G>A	p.Ala845Thr	p.A845T	ENST00000377346	NM_005026.3	845	Gca/Aca																																																																														
MTOR	2475	MSKCC	GRCh37	1	11307708	11307708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	102	375	0	ENST00000361445.4:c.1199C>T	p.Ala400Val	p.A400V	ENST00000361445	NM_004958.3	400	gCt/gTt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11318542	11318542	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	52	252	0	ENST00000361445.4:c.271G>T	p.Ala91Ser	p.A91S	ENST00000361445	NM_004958.3	91	Gct/Tct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259759	16259759	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	121	402	1	ENST00000375759.3:c.7024C>T	p.Arg2342Ter	p.R2342*	ENST00000375759	NM_015001.2	2342	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260050	16260050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	151	472	0	ENST00000375759.3:c.7315C>A	p.Pro2439Thr	p.P2439T	ENST00000375759	NM_015001.2	2439	Ccg/Acg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087929	27087929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	123	507	1	ENST00000324856.7:c.2216C>A	p.Pro739His	p.P739H	ENST00000324856	NM_006015.4	739	cCt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101238	27101238	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	112	603	1	ENST00000324856.7:c.4520A>C	p.Asn1507Thr	p.N1507T	ENST00000324856	NM_006015.4	1507	aAt/aCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27102112	27102112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	32	469	0	ENST00000324856.7:c.5038C>A	p.Leu1680Ile	p.L1680I	ENST00000324856	NM_006015.4	1680	Ctc/Atc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36931963	36931963	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	160	556	0	ENST00000361632.4:c.2506T>G	p.Phe836Val	p.F836V	ENST00000361632		836	Ttc/Gtc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935357	36935357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	205	648	0	ENST00000361632.4:c.1370A>G	p.Gln457Arg	p.Q457R	ENST00000361632		457	cAg/cGg																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39325246	39325246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	133	462	0	ENST00000373001.3:c.73G>T	p.Asp25Tyr	p.D25Y	ENST00000373001	NM_022157.3	25	Gac/Tac																																																																														
MPL	4352	MSKCC	GRCh37	1	43817970	43817970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	87	529	0	ENST00000372470.3:c.1649G>A	p.Ser550Asn	p.S550N	ENST00000372470	NM_005373.2	550	aGc/aAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65323437	65323437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	103	401	2	ENST00000342505.4:c.1360C>T	p.Arg454Trp	p.R454W	ENST00000342505	NM_002227.2	454	Cgg/Tgg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339110	65339110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	26	366	0	ENST00000342505.4:c.426G>T	p.Lys142Asn	p.K142N	ENST00000342505	NM_002227.2	142	aaG/aaT																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115268832	115268832	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	46	347	0	ENST00000438362.2:c.1778G>T	p.Ser593Ile	p.S593I	ENST00000438362	NM_001242891.1	593	aGt/aTt																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117690405	117690405	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	85	310	0	ENST00000369458.3:c.725-1G>T		p.X242_splice	ENST00000369458	NM_024626.3	242																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120510194	120510194	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199565938		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	99	323	0	ENST00000256646.2:c.1315G>A	p.Ala439Thr	p.A439T	ENST00000256646	NM_024408.3	439	Gcc/Acc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510705	120510705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	109	463	1	ENST00000256646.2:c.1259C>T	p.Ala420Val	p.A420V	ENST00000256646	NM_024408.3	420	gCc/gTc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843688	156843688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	212	764	3	ENST00000524377.1:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000524377	NM_002529.3	372	Gcc/Acc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740183	162740183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	92	413	0	ENST00000367921.3:c.1385C>A	p.Pro462His	p.P462H	ENST00000367921	NM_006182.2	462	cCt/cAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740215	162740215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	118	384	0	ENST00000367921.3:c.1417C>T	p.Arg473Cys	p.R473C	ENST00000367921	NM_006182.2	473	Cgc/Tgc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162748433	162748433	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	91	300	1	ENST00000367921.3:c.2350del	p.Cys784ValfsTer44	p.C784Vfs*44	ENST00000367921	NM_006182.2	783	Ttt/tt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163306606	163306606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	50	287	0	ENST00000271452.3:c.403C>T	p.Arg135Cys	p.R135C	ENST00000271452	NM_145697.2	135	Cgt/Tgt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163318779	163318779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116669228		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	37	304	0	ENST00000271452.3:c.1169G>A	p.Arg390Gln	p.R390Q	ENST00000271452	NM_145697.2	390	cGa/cAa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193104572	193104572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	57	288	0	ENST00000367435.3:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000367435	NM_024529.4	120	cGa/cAa																																																																														
IL10	3586	MSKCC	GRCh37	1	206943233	206943233	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	68	279	0	ENST00000423557.1:c.385T>G	p.Phe129Val	p.F129V	ENST00000423557	NM_000572.2	129	Ttt/Gtt																																																																														
PARP1	142	MSKCC	GRCh37	1	226556015	226556015	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	74	346	0	ENST00000366794.5:c.2162C>A	p.Ser721Tyr	p.S721Y	ENST00000366794	NM_001618.3	721	tCt/tAt																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612807	228612807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	184	686	0	ENST00000366696.1:c.220G>A	p.Glu74Lys	p.E74K	ENST00000366696	NM_003493.2	74	Gag/Aag																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612980	228612980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	126	486	0	ENST00000366696.1:c.47C>T	p.Ala16Val	p.A16V	ENST00000366696	NM_003493.2	16	gCg/gTg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243736307	243736307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	89	331	2	ENST00000263826.5:c.740G>A	p.Arg247His	p.R247H	ENST00000263826	NM_005465.4	247	cGc/cAc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243777030	243777030	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	52	272	0	ENST00000263826.5:c.639T>G	p.Tyr213Ter	p.Y213*	ENST00000263826	NM_005465.4	213	taT/taG																																																																														
AKT3	10000	MSKCC	GRCh37	1	243858935	243858935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	52	353	0	ENST00000263826.5:c.130G>T	p.Asp44Tyr	p.D44Y	ENST00000263826	NM_005465.4	44	Gat/Tat																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246021924	246021924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	179	491	1	ENST00000388985.4:c.950C>T	p.Ser317Phe	p.S317F	ENST00000388985		317	tCt/tTt																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246091336	246091336	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	90	213	0	ENST00000388985.4:c.600-1G>A		p.X200_splice	ENST00000388985		200																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246490619	246490619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	46	307	0	ENST00000388985.4:c.415G>T	p.Asp139Tyr	p.D139Y	ENST00000388985		139	Gat/Tat																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100708	8100708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	201	621	0	ENST00000346208.3:c.682G>A	p.Glu228Lys	p.E228K	ENST00000346208		228	Gag/Aag																																																																														
RET	5979	MSKCC	GRCh37	10	43609103	43609103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	172	639	1	ENST00000355710.3:c.1859G>A	p.Cys620Tyr	p.C620Y	ENST00000355710	NM_020975.4	620	tGc/tAc																																																																														
RET	5979	MSKCC	GRCh37	10	43617397	43617397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	97	318	0	ENST00000355710.3:c.2734C>T	p.Arg912Trp	p.R912W	ENST00000355710	NM_020975.4	912	Cgg/Tgg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63661937	63661937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	68	276	0	ENST00000279873.7:c.41G>T	p.Gly14Val	p.G14V	ENST00000279873	NM_032199.2	14	gGc/gTc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845627	63845627	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	44	161	0	ENST00000279873.7:c.1366G>T	p.Glu456Ter	p.E456*	ENST00000279873	NM_032199.2	456	Gaa/Taa																																																																														
TET1	80312	MSKCC	GRCh37	10	70405304	70405304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	92	432	0	ENST00000373644.4:c.2818G>T	p.Asp940Tyr	p.D940Y	ENST00000373644	NM_030625.2	940	Gac/Tac																																																																														
TET1	80312	MSKCC	GRCh37	10	70442666	70442666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	96	367	0	ENST00000373644.4:c.4988C>T	p.Ala1663Val	p.A1663V	ENST00000373644	NM_030625.2	1663	gCt/gTt																																																																														
TET1	80312	MSKCC	GRCh37	10	70451374	70451374	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	114	404	0	ENST00000373644.4:c.6214G>T	p.Glu2072Ter	p.E2072*	ENST00000373644	NM_030625.2	2072	Gaa/Taa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88649856	88649856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	21	244	0	ENST00000372037.3:c.105G>T	p.Met35Ile	p.M35I	ENST00000372037	NM_004329.2	35	atG/atT																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681278	88681278	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	117	464	1	ENST00000372037.3:c.1168G>T	p.Asp390Tyr	p.D390Y	ENST00000372037	NM_004329.2	390	Gac/Tac																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681341	88681341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	42	213	1	ENST00000372037.3:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000372037	NM_004329.2	411	Gaa/Aaa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683433	88683433	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	19	107	0	ENST00000372037.3:c.1556A>C	p.Lys519Thr	p.K519T	ENST00000372037	NM_004329.2	519	aAg/aCg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685313	89685313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	15	195	0	ENST00000371953.3:c.208C>A	p.Leu70Ile	p.L70I	ENST00000371953	NM_000314.4	70	Ctt/Att																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	67	307	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325146	123325146	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199575491		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	156	485	0	ENST00000358487.5:c.182G>A	p.Arg61His	p.R61H	ENST00000358487	NM_000141.4	61	cGc/cAc																																																																														
HRAS	3265	MSKCC	GRCh37	11	533478	533478	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	199	677	0	ENST00000311189.7:c.425T>C	p.Ile142Thr	p.I142T	ENST00000311189		142	aTc/aCc																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154267	2154267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	174	555	0	ENST00000434045.2:c.661G>T	p.Asp221Tyr	p.D221Y	ENST00000434045	NM_001127598.1	221	Gac/Tac																																																																														
WT1	7490	MSKCC	GRCh37	11	32421507	32421507	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs150194429		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	155	421	0	ENST00000332351.3:c.1085T>G	p.Phe362Cys	p.F362C	ENST00000332351	NM_024426.4	362	tTc/tGc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64128638	64128638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	136	470	0	ENST00000334205.4:c.495G>T	p.Glu165Asp	p.E165D	ENST00000334205	NM_003942.2	165	gaG/gaT																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572612	64572612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	50	704	0	ENST00000337652.1:c.1259G>T	p.Arg420Leu	p.R420L	ENST00000337652	NM_130803.2	420	cGa/cTa																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67197055	67197055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	76	319	1	ENST00000312629.5:c.298G>T	p.Val100Phe	p.V100F	ENST00000312629	NM_003952.2	100	Gtc/Ttc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67198975	67198975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	95	335	0	ENST00000312629.5:c.446A>G	p.Glu149Gly	p.E149G	ENST00000312629	NM_003952.2	149	gAg/gGg																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588217	69588217	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140567674		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	39	437	0	ENST00000168712.1:c.481C>T	p.Leu161Phe	p.L161F	ENST00000168712	NM_002007.2	161	Ctc/Ttc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625398	69625398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	185	707	0	ENST00000334134.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000334134	NM_005247.2	132	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939804	71939804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	222	729	0	ENST00000298229.2:c.431G>A	p.Arg144His	p.R144H	ENST00000298229	NM_001567.3	144	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942155	71942155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	191	645	1	ENST00000298229.2:c.1419G>T	p.Glu473Asp	p.E473D	ENST00000298229	NM_001567.3	473	gaG/gaT																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945335	71945335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	98	509	1	ENST00000298229.2:c.2223G>T	p.Lys741Asn	p.K741N	ENST00000298229	NM_001567.3	741	aaG/aaT																																																																														
EED	8726	MSKCC	GRCh37	11	85989511	85989511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	73	332	0	ENST00000263360.6:c.1270A>G	p.Ile424Val	p.I424V	ENST00000263360	NM_003797.3	424	Att/Gtt																																																																														
EED	8726	MSKCC	GRCh37	11	85989562	85989562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	73	295	2	ENST00000263360.6:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000263360	NM_003797.3	441	Cga/Tga																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204835	94204835	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	31	293	0	ENST00000323929.3:c.750A>C	p.Lys250Asn	p.K250N	ENST00000323929	NM_005591.3	250	aaA/aaC																																																																														
MRE11A	0	MSKCC	GRCh37	11	94219121	94219121	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	62	283	0	ENST00000323929.3:c.283A>C	p.Ser95Arg	p.S95R	ENST00000323929	NM_005591.3	95	Agt/Cgt																																																																														
SESN3	143686	MSKCC	GRCh37	11	94911953	94911953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	64	414	0	ENST00000536441.1:c.977G>A	p.Arg326Gln	p.R326Q	ENST00000536441	NM_144665.3	326	cGa/cAa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195702	102195702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	56	325	0	ENST00000263464.3:c.462T>G	p.Phe154Leu	p.F154L	ENST00000263464	NM_001165.4	154	ttT/ttG																																																																														
ATM	472	MSKCC	GRCh37	11	108100028	108100028	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	51	221	0	ENST00000278616.4:c.309C>A	p.Tyr103Ter	p.Y103*	ENST00000278616	NM_000051.3	103	taC/taA																																																																														
ATM	472	MSKCC	GRCh37	11	108123575	108123575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	45	308	0	ENST00000278616.4:c.1834C>A	p.Leu612Ile	p.L612I	ENST00000278616	NM_000051.3	612	Ctt/Att																																																																														
ATM	472	MSKCC	GRCh37	11	108142131	108142131	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	41	294	0	ENST00000278616.4:c.3075T>G	p.Phe1025Leu	p.F1025L	ENST00000278616	NM_000051.3	1025	ttT/ttG																																																																														
ATM	472	MSKCC	GRCh37	11	108216472	108216472	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	34	177	0	ENST00000278616.4:c.8421G>T	p.Glu2807Asp	p.E2807D	ENST00000278616	NM_000051.3	2807	gaG/gaT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373118	118373118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	36	225	0	ENST00000534358.1:c.6511C>T	p.Pro2171Ser	p.P2171S	ENST00000534358	NM_005933.3	2171	Cct/Tct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374027	118374027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	69	311	0	ENST00000534358.1:c.7420C>T	p.Pro2474Ser	p.P2474S	ENST00000534358	NM_005933.3	2474	Cct/Tct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374309	118374309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	66	327	0	ENST00000534358.1:c.7702C>T	p.Pro2568Ser	p.P2568S	ENST00000534358	NM_005933.3	2568	Cca/Tca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374708	118374708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	51	277	2	ENST00000534358.1:c.8101G>A	p.Ala2701Thr	p.A2701T	ENST00000534358	NM_005933.3	2701	Gca/Aca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375309	118375309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	68	295	0	ENST00000534358.1:c.8702C>A	p.Ser2901Tyr	p.S2901Y	ENST00000534358	NM_005933.3	2901	tCt/tAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376509	118376509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	42	284	0	ENST00000534358.1:c.9902C>T	p.Pro3301Leu	p.P3301L	ENST00000534358	NM_005933.3	3301	cCg/cTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118391539	118391539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	61	256	0	ENST00000534358.1:c.11452C>T	p.Pro3818Ser	p.P3818S	ENST00000534358	NM_005933.3	3818	Cca/Tca																																																																														
CBL	867	MSKCC	GRCh37	11	119144724	119144724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	62	264	0	ENST00000264033.4:c.737G>A	p.Arg246Gln	p.R246Q	ENST00000264033	NM_005188.3	246	cGa/cAa																																																																														
CBL	867	MSKCC	GRCh37	11	119148927	119148927	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	66	353	1	ENST00000264033.4:c.1147A>C	p.Ile383Leu	p.I383L	ENST00000264033	NM_005188.3	383	Ata/Cta																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404855	404855	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	134	327	0	ENST00000399788.2:c.4339G>T	p.Glu1447Ter	p.E1447*	ENST00000399788	NM_001042603.1	1447	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	463366	463366	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	46	234	0	ENST00000399788.2:c.905del	p.Gly302GlufsTer22	p.G302Efs*22	ENST00000399788	NM_001042603.1	302	gGa/ga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	464349	464349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	76	361	0	ENST00000399788.2:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000399788	NM_001042603.1	282	cGg/cAg																																																																														
RAD52	5893	MSKCC	GRCh37	12	1034690	1034690	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	57	289	0	ENST00000358495.3:c.469A>G	p.Ser157Gly	p.S157G	ENST00000358495	NM_134424.2	157	Agt/Ggt																																																																														
CCND2	894	MSKCC	GRCh37	12	4383380	4383380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	103	444	0	ENST00000261254.3:c.174G>T	p.Met58Ile	p.M58I	ENST00000261254	NM_001759.3	58	atG/atT																																																																														
CCND2	894	MSKCC	GRCh37	12	4385169	4385169	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	60	203	0	ENST00000261254.3:c.196-2A>C		p.X66_splice	ENST00000261254	NM_001759.3	66																																																																															
CCND2	894	MSKCC	GRCh37	12	4385333	4385333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	40	337	0	ENST00000261254.3:c.358G>A	p.Ala120Thr	p.A120T	ENST00000261254	NM_001759.3	120	Gcg/Acg																																																																														
CCND2	894	MSKCC	GRCh37	12	4398007	4398007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	96	384	0	ENST00000261254.3:c.572-1G>T		p.X191_splice	ENST00000261254	NM_001759.3	191																																																																															
CCND2	894	MSKCC	GRCh37	12	4398153	4398153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	130	413	0	ENST00000261254.3:c.717C>A	p.Asp239Glu	p.D239E	ENST00000261254	NM_001759.3	239	gaC/gaA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435082	18435082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	50	247	0	ENST00000266497.5:c.67G>A	p.Glu23Lys	p.E23K	ENST00000266497		23	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18466937	18466937	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	58	227	0	ENST00000266497.5:c.1076A>G	p.Lys359Arg	p.K359R	ENST00000266497		359	aAa/aGa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18576967	18576967	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	29	338	0	ENST00000266497.5:c.2375T>G	p.Leu792Arg	p.L792R	ENST00000266497		792	cTt/cGt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641559	18641559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	49	255	0	ENST00000266497.5:c.2558G>T	p.Arg853Ile	p.R853I	ENST00000266497		853	aGa/aTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793430	18793430	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	64	302	0	ENST00000266497.5:c.4127T>G	p.Val1376Gly	p.V1376G	ENST00000266497		1376	gTt/gGt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21639478	21639478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	46	210	0	ENST00000421138.2:c.436G>T	p.Asp146Tyr	p.D146Y	ENST00000421138		146	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380309	25380309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	73	311	0	ENST00000256078.4:c.149C>T	p.Thr50Ile	p.T50I	ENST00000256078	NM_033360.2	50	aCc/aTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211668	46211668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	38	168	0	ENST00000334344.6:c.634G>A	p.Asp212Asn	p.D212N	ENST00000334344	NM_152641.2	212	Gac/Aac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244026	46244026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	58	349	0	ENST00000334344.6:c.2120C>A	p.Ala707Asp	p.A707D	ENST00000334344	NM_152641.2	707	gCt/gAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244436	46244436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	72	355	0	ENST00000334344.6:c.2530G>T	p.Asp844Tyr	p.D844Y	ENST00000334344	NM_152641.2	844	Gat/Tat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246383	46246383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	58	261	0	ENST00000334344.6:c.4477G>A	p.Val1493Ile	p.V1493I	ENST00000334344	NM_152641.2	1493	Gta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431580	49431580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	186	648	0	ENST00000301067.7:c.9559G>A	p.Ala3187Thr	p.A3187T	ENST00000301067	NM_003482.3	3187	Gcc/Acc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50490728	50490728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	122	405	0	ENST00000394963.4:c.1365G>A	p.Trp455Ter	p.W455*	ENST00000394963	NM_003076.4	455	tgG/tgA																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	187	576	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864355	57864355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	32	605	0	ENST00000228682.2:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000228682	NM_005269.2	611	cGg/cAg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865012	57865012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	109	617	2	ENST00000228682.2:c.2489C>T	p.Ala830Val	p.A830V	ENST00000228682	NM_005269.2	830	gCa/gTa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865408	57865408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	42	660	0	ENST00000228682.2:c.2885G>A	p.Gly962Asp	p.G962D	ENST00000228682	NM_005269.2	962	gGt/gAt																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811667	102811667	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	155	550	0	ENST00000307046.8:c.517G>T	p.Gly173Ter	p.G173*	ENST00000307046	NM_001111285.1	173	Gga/Tga																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856130	111856130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	176	557	2	ENST00000341259.2:c.181G>A	p.Glu61Lys	p.E61K	ENST00000341259	NM_005475.2	61	Gag/Aag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416734	121416734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	156	702	0	ENST00000257555.6:c.163G>T	p.Gly55Trp	p.G55W	ENST00000257555		55	Ggg/Tgg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431486	121431486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	40	444	0	ENST00000257555.6:c.690G>T	p.Glu230Asp	p.E230D	ENST00000257555		230	gaG/gaT																																																																														
POLE	5426	MSKCC	GRCh37	12	133212495	133212495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	21	341	0	ENST00000320574.5:c.5794C>T	p.Arg1932Cys	p.R1932C	ENST00000320574	NM_006231.2	1932	Cgt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133218920	133218920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	140	706	0	ENST00000320574.5:c.5016C>A	p.Phe1672Leu	p.F1672L	ENST00000320574	NM_006231.2	1672	ttC/ttA																																																																														
POLE	5426	MSKCC	GRCh37	12	133220557	133220557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	68	353	0	ENST00000320574.5:c.4156C>T	p.Arg1386Trp	p.R1386W	ENST00000320574	NM_006231.2	1386	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133225601	133225601	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	186	605	0	ENST00000320574.5:c.4063T>G	p.Leu1355Val	p.L1355V	ENST00000320574	NM_006231.2	1355	Ttg/Gtg																																																																														
POLE	5426	MSKCC	GRCh37	12	133248860	133248860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116260568		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	161	501	0	ENST00000320574.5:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000320574	NM_006231.2	579	Cgc/Tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133253157	133253157	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	98	325	0	ENST00000320574.5:c.884T>G	p.Met295Arg	p.M295R	ENST00000320574	NM_006231.2	295	aTg/aGg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562477	21562477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	13	247	0	ENST00000382592.4:c.1442C>T	p.Ala481Val	p.A481V	ENST00000382592	NM_014572.2	481	gCg/gTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578310	28578310	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	59	310	0	ENST00000241453.7:c.2861T>G	p.Met954Arg	p.M954R	ENST00000241453	NM_004119.2	954	aTg/aGg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877366	28877366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	135	353	0	ENST00000282397.4:c.3955G>A	p.Ala1319Thr	p.A1319T	ENST00000282397	NM_002019.4	1319	Gcg/Acg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28897084	28897084	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	58	262	0	ENST00000282397.4:c.2797-1G>T		p.X933_splice	ENST00000282397	NM_002019.4	933																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008324	29008324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	35	196	0	ENST00000282397.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000282397	NM_002019.4	183	Cgc/Tgc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012441	29012441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55974987		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	63	450	0	ENST00000282397.4:c.430G>A	p.Glu144Lys	p.E144K	ENST00000282397	NM_002019.4	144	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041233	29041233	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	101	434	0	ENST00000282397.4:c.195A>C	p.Glu65Asp	p.E65D	ENST00000282397	NM_002019.4	65	gaA/gaC																																																																														
BRCA2	675	MSKCC	GRCh37	13	32900284	32900284	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs113114005		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	45	269	0	ENST00000380152.3:c.472T>C	p.Ser158Pro	p.S158P	ENST00000380152		158	Tca/Cca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32903625	32903625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	22	240	0	ENST00000380152.3:c.677C>T	p.Thr226Ile	p.T226I	ENST00000380152		226	aCt/aTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911503	32911503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	38	398	0	ENST00000380152.3:c.3011G>T	p.Ser1004Ile	p.S1004I	ENST00000380152		1004	aGt/aTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913083	32913083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	79	377	0	ENST00000380152.3:c.4591A>C	p.Lys1531Gln	p.K1531Q	ENST00000380152		1531	Aaa/Caa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913557	32913557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	39	313	0	ENST00000380152.3:c.5065G>A	p.Ala1689Thr	p.A1689T	ENST00000380152		1689	Gca/Aca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914835	32914835	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	52	363	0	ENST00000380152.3:c.6343G>T	p.Glu2115Ter	p.E2115*	ENST00000380152		2115	Gag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929156	32929156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	69	368	0	ENST00000380152.3:c.7166G>T	p.Arg2389Ile	p.R2389I	ENST00000380152		2389	aGa/aTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972800	32972800	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	28	315	0	ENST00000380152.3:c.10150C>T	p.Arg3384Ter	p.R3384*	ENST00000380152		3384	Cga/Tga																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134682	41134682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	73	351	0	ENST00000379561.5:c.946C>T	p.Arg316Ter	p.R316*	ENST00000379561	NM_002015.3	316	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	48916843	48916843	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	59	226	0	ENST00000267163.4:c.373G>T	p.Glu125Ter	p.E125*	ENST00000267163	NM_000321.2	125	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	49033886	49033886	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	72	302	0	ENST00000267163.4:c.2023G>T	p.Glu675Ter	p.E675*	ENST00000267163	NM_000321.2	675	Gaa/Taa																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281886	49281886	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs201885552		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	29	498	0	ENST00000282018.3:c.933T>A	p.Asn311Lys	p.N311K	ENST00000282018	NM_020377.2	311	aaT/aaA																																																																														
DIS3	22894	MSKCC	GRCh37	13	73334762	73334762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	24	201	0	ENST00000377767.4:c.2698G>A	p.Val900Met	p.V900M	ENST00000377767	NM_014953.3	900	Gtg/Atg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103506681	103506681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	47	173	0	ENST00000355739.4:c.424G>A	p.Asp142Asn	p.D142N	ENST00000355739	NM_000123.3	142	Gac/Aac																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514057	103514057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	33	255	0	ENST00000355739.4:c.873G>T	p.Leu291Phe	p.L291F	ENST00000355739	NM_000123.3	291	ttG/ttT																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514904	103514904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	77	298	0	ENST00000355739.4:c.1405G>T	p.Asp469Tyr	p.D469Y	ENST00000355739	NM_000123.3	469	Gac/Tac																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518224	103518224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	42	217	0	ENST00000355739.4:c.2162C>T	p.Ala721Val	p.A721V	ENST00000355739	NM_000123.3	721	gCg/gTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436515	110436515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	203	883	0	ENST00000375856.3:c.1886C>A	p.Pro629Gln	p.P629Q	ENST00000375856	NM_003749.2	629	cCa/cAa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046502	30046502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	105	449	0	ENST00000331968.5:c.2681C>A	p.Thr894Asn	p.T894N	ENST00000331968	NM_002742.2	894	aCt/aAt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093381	30093381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	38	386	0	ENST00000331968.5:c.1882C>T	p.Arg628Cys	p.R628C	ENST00000331968	NM_002742.2	628	Cgt/Tgt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093456	30093456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	39	271	0	ENST00000331968.5:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000331968	NM_002742.2	603	Cgt/Tgt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30102152	30102152	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	68	334	0	ENST00000331968.5:c.1315C>T	p.Arg439Trp	p.R439W	ENST00000331968	NM_002742.2	439	Cgg/Tgg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108020	30108020	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	29	466	0	ENST00000331968.5:c.787T>G	p.Leu263Val	p.L263V	ENST00000331968	NM_002742.2	263	Ttg/Gtg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060685	38060685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	253	759	0	ENST00000250448.2:c.1304C>T	p.Ala435Val	p.A435V	ENST00000250448	NM_004496.3	435	gCc/gTc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060728	38060728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	252	789	2	ENST00000250448.2:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000250448	NM_004496.3	421	Gaa/Aaa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060919	38060919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	144	457	0	ENST00000250448.2:c.1070C>T	p.Ala357Val	p.A357V	ENST00000250448	NM_004496.3	357	gCg/gTg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422185	81422185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	108	408	0	ENST00000298171.2:c.161C>T	p.Thr54Met	p.T54M	ENST00000298171	NM_000369.2	54	aCg/aTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570036	95570036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	88	429	0	ENST00000343455.3:c.3697G>A	p.Asp1233Asn	p.D1233N	ENST00000343455	NM_177438.2	1233	Gat/Aat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572438	95572438	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	47	282	0	ENST00000343455.3:c.2927A>G	p.Tyr976Cys	p.Y976C	ENST00000343455	NM_177438.2	976	tAc/tGc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574033	95574033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	16	218	0	ENST00000343455.3:c.2716C>T	p.Arg906Cys	p.R906C	ENST00000343455	NM_177438.2	906	Cgc/Tgc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574292	95574292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144649926		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	11	281	0	ENST00000343455.3:c.2575C>T	p.Arg859Trp	p.R859W	ENST00000343455	NM_177438.2	859	Cgg/Tgg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582819	95582819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	33	230	0	ENST00000343455.3:c.1723G>T	p.Asp575Tyr	p.D575Y	ENST00000343455	NM_177438.2	575	Gac/Tac																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675070	40675070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	116	552	0	ENST00000249776.8:c.34G>T	p.Val12Phe	p.V12F	ENST00000249776	NM_033286.3	12	Gtt/Ttt																																																																														
MGA	23269	MSKCC	GRCh37	15	41961418	41961418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	59	389	0	ENST00000219905.7:c.326G>A	p.Arg109His	p.R109H	ENST00000219905	NM_001164273.1	109	cGt/cAt																																																																														
MGA	23269	MSKCC	GRCh37	15	41961652	41961652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	88	363	0	ENST00000219905.7:c.560A>G	p.Asp187Gly	p.D187G	ENST00000219905	NM_001164273.1	187	gAc/gGc																																																																														
MGA	23269	MSKCC	GRCh37	15	41961900	41961900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	13	312	0	ENST00000219905.7:c.808G>T	p.Asp270Tyr	p.D270Y	ENST00000219905	NM_001164273.1	270	Gat/Tat																																																																														
MGA	23269	MSKCC	GRCh37	15	41988918	41988918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	75	384	1	ENST00000219905.7:c.1710G>T	p.Lys570Asn	p.K570N	ENST00000219905	NM_001164273.1	570	aaG/aaT																																																																														
MGA	23269	MSKCC	GRCh37	15	41989221	41989221	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	62	334	0	ENST00000219905.7:c.2013G>T	p.Lys671Asn	p.K671N	ENST00000219905	NM_001164273.1	671	aaG/aaT																																																																														
MGA	23269	MSKCC	GRCh37	15	42021428	42021428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	78	316	1	ENST00000219905.7:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000219905	NM_001164273.1	1242	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42041075	42041075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	119	484	0	ENST00000219905.7:c.5453G>A	p.Arg1818Gln	p.R1818Q	ENST00000219905	NM_001164273.1	1818	cGa/cAa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43720237	43720237	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	111	317	0	ENST00000382044.4:c.3805G>T	p.Glu1269Ter	p.E1269*	ENST00000382044	NM_001141980.1	1269	Gaa/Taa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762205	43762205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	100	475	0	ENST00000382044.4:c.1240C>A	p.Leu414Ile	p.L414I	ENST00000382044	NM_001141980.1	414	Ctt/Att																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483928	88483928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	147	514	0	ENST00000360948.2:c.1642G>T	p.Ala548Ser	p.A548S	ENST00000360948	NM_001012338.2	548	Gcc/Tcc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669507	88669507	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	51	328	0	ENST00000360948.2:c.1391T>C	p.Met464Thr	p.M464T	ENST00000360948	NM_001012338.2	464	aTg/aCg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678473	88678473	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	132	573	0	ENST00000360948.2:c.1063G>T	p.Glu355Ter	p.E355*	ENST00000360948	NM_001012338.2	355	Gag/Tag																																																																														
BLM	641	MSKCC	GRCh37	15	91292938	91292938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	81	423	0	ENST00000355112.3:c.440C>A	p.Ser147Tyr	p.S147Y	ENST00000355112	NM_000057.2	147	tCt/tAt																																																																														
BLM	641	MSKCC	GRCh37	15	91295040	91295040	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	53	215	0	ENST00000355112.3:c.823T>G	p.Leu275Val	p.L275V	ENST00000355112	NM_000057.2	275	Ttg/Gtg																																																																														
BLM	641	MSKCC	GRCh37	15	91303420	91303420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	44	315	0	ENST00000355112.3:c.1131G>T	p.Glu377Asp	p.E377D	ENST00000355112	NM_000057.2	377	gaG/gaT																																																																														
BLM	641	MSKCC	GRCh37	15	91306240	91306240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	49	245	0	ENST00000355112.3:c.1927C>T	p.Arg643Cys	p.R643C	ENST00000355112	NM_000057.2	643	Cgt/Tgt																																																																														
BLM	641	MSKCC	GRCh37	15	91310233	91310233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	12	215	0	ENST00000355112.3:c.2287C>A	p.Leu763Ile	p.L763I	ENST00000355112	NM_000057.2	763	Cta/Ata																																																																														
BLM	641	MSKCC	GRCh37	15	91341447	91341447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	28	298	0	ENST00000355112.3:c.3238G>A	p.Asp1080Asn	p.D1080N	ENST00000355112	NM_000057.2	1080	Gat/Aat																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347210	347210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	144	627	0	ENST00000262320.3:c.1801G>A	p.Ala601Thr	p.A601T	ENST00000262320	NM_003502.3	601	Gcg/Acg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396155	396155	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	118	356	0	ENST00000262320.3:c.871G>T	p.Glu291Ter	p.E291*	ENST00000262320	NM_003502.3	291	Gag/Tag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138118	2138118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	58	763	3	ENST00000219476.3:c.5138G>A	p.Arg1713His	p.R1713H	ENST00000219476	NM_000548.3	1713	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778977	3778977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	146	619	0	ENST00000262367.5:c.6071C>T	p.Ala2024Val	p.A2024V	ENST00000262367	NM_004380.2	2024	gCg/gTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819235	3819235	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	43	397	0	ENST00000262367.5:c.3000G>T	p.Glu1000Asp	p.E1000D	ENST00000262367	NM_004380.2	1000	gaG/gaT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828120	3828120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	132	406	1	ENST00000262367.5:c.2005C>T	p.Arg669Trp	p.R669W	ENST00000262367	NM_004380.2	669	Cgg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858247	9858247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	67	358	0	ENST00000330684.3:c.3154C>A	p.Leu1052Ile	p.L1052I	ENST00000330684	NM_001134407.1	1052	Ctt/Att																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858260	9858260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	24	340	0	ENST00000330684.3:c.3141G>T	p.Lys1047Asn	p.K1047N	ENST00000330684	NM_001134407.1	1047	aaG/aaT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923444	9923444	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	94	479	0	ENST00000330684.3:c.1843A>C	p.Asn615His	p.N615H	ENST00000330684	NM_001134407.1	615	Aac/Cac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031921	10031921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	120	499	0	ENST00000330684.3:c.902C>T	p.Thr301Ile	p.T301I	ENST00000330684	NM_001134407.1	301	aCc/aTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274136	10274136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	154	557	0	ENST00000330684.3:c.133G>A	p.Asp45Asn	p.D45N	ENST00000330684	NM_001134407.1	45	Gac/Aac																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020454	14020454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	79	239	0	ENST00000311895.7:c.425C>A	p.Ser142Tyr	p.S142Y	ENST00000311895	NM_005236.2	142	tCt/tAt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14022004	14022004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	29	398	0	ENST00000311895.7:c.704C>T	p.Ala235Val	p.A235V	ENST00000311895	NM_005236.2	235	gCa/gTa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23637636	23637636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	102	499	0	ENST00000261584.4:c.2669C>A	p.Ala890Asp	p.A890D	ENST00000261584	NM_024675.3	890	gCt/gAt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23640966	23640966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	89	339	0	ENST00000261584.4:c.2509G>A	p.Glu837Lys	p.E837K	ENST00000261584	NM_024675.3	837	Gaa/Aaa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641779	23641779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	34	219	0	ENST00000261584.4:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000261584	NM_024675.3	566	Cgt/Tgt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50815252	50815252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	105	509	0	ENST00000398568.2:c.1605C>A	p.Ser535Arg	p.S535R	ENST00000398568	NM_001042412.1	535	agC/agA																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650710	67650710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	153	402	0	ENST00000264010.4:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000264010	NM_006565.3	339	Cgg/Tgg																																																																														
CDH1	999	MSKCC	GRCh37	16	68856122	68856122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	100	378	0	ENST00000261769.5:c.1930G>A	p.Asp644Asn	p.D644N	ENST00000261769	NM_004360.3	644	Gac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827916	72827916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	155	566	1	ENST00000268489.5:c.8665C>T	p.Arg2889Trp	p.R2889W	ENST00000268489	NM_006885.3	2889	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830135	72830135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	111	486	0	ENST00000268489.5:c.6446G>A	p.Arg2149His	p.R2149H	ENST00000268489	NM_006885.3	2149	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830385	72830385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	60	269	0	ENST00000268489.5:c.6196G>T	p.Ala2066Ser	p.A2066S	ENST00000268489	NM_006885.3	2066	Gca/Tca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831456	72831456	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	36	448	0	ENST00000268489.5:c.5125G>T	p.Glu1709Ter	p.E1709*	ENST00000268489	NM_006885.3	1709	Gag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984685	72984685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	224	614	1	ENST00000268489.5:c.2899G>A	p.Val967Met	p.V967M	ENST00000268489	NM_006885.3	967	Gtg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991901	72991901	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147160019		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	186	526	0	ENST00000268489.5:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000268489	NM_006885.3	715	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992235	72992235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	89	585	0	ENST00000268489.5:c.1810G>T	p.Glu604Ter	p.E604*	ENST00000268489	NM_006885.3	604	Gaa/Taa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348068	89348068	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	107	722	0	ENST00000301030.4:c.4882G>T	p.Asp1628Tyr	p.D1628Y	ENST00000301030	NM_001256183.1	1628	Gac/Tac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348743	89348743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	193	610	0	ENST00000301030.4:c.4207G>A	p.Gly1403Arg	p.G1403R	ENST00000301030	NM_001256183.1	1403	Gga/Aga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351332	89351332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	181	725	1	ENST00000301030.4:c.1618G>T	p.Asp540Tyr	p.D540Y	ENST00000301030	NM_001256183.1	540	Gac/Tac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89837020	89837020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	177	572	0	ENST00000389301.3:c.2174C>A	p.Ser725Tyr	p.S725Y	ENST00000389301	NM_000135.2	725	tCt/tAt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882364	89882364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	30	474	0	ENST00000389301.3:c.110C>A	p.Pro37His	p.P37H	ENST00000389301	NM_000135.2	37	cCt/cAt																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216087	7216087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	21	278	1	ENST00000380728.2:c.972C>A	p.Phe324Leu	p.F324L	ENST00000380728		324	ttC/ttA																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7983258	7983258	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	113	488	0	ENST00000319144.4:c.756G>T	p.Glu252Asp	p.E252D	ENST00000319144	NM_001139.2	252	gaG/gaT																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984505	7984505	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	27	404	0	ENST00000319144.4:c.353G>T	p.Gly118Val	p.G118V	ENST00000319144	NM_001139.2	118	gGa/gTa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032537	12032537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	69	299	0	ENST00000353533.5:c.973C>T	p.Pro325Ser	p.P325S	ENST00000353533	NM_003010.3	325	Cct/Tct																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119768	17119768	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	162	633	0	ENST00000285071.4:c.1226A>G	p.Tyr409Cys	p.Y409C	ENST00000285071	NM_144997.5	409	tAc/tGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29483134	29483134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	31	289	0	ENST00000358273.4:c.194T>C	p.Val65Ala	p.V65A	ENST00000358273	NM_001042492.2	65	gTt/gCt																																																																														
NF1	4763	MSKCC	GRCh37	17	29559872	29559872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	77	216	0	ENST00000358273.4:c.3469G>A	p.Val1157Ile	p.V1157I	ENST00000358273	NM_001042492.2	1157	Gta/Ata																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	65	307	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29592246	29592246	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	24	132	0	ENST00000358273.4:c.4725-1G>T		p.X1575_splice	ENST00000358273	NM_001042492.2	1575																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627589	37627589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	91	427	0	ENST00000447079.4:c.1504G>T	p.Asp502Tyr	p.D502Y	ENST00000447079	NM_015083.1	502	Gac/Tac																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475082	40475082	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	129	452	0	ENST00000264657.5:c.1828T>C	p.Phe610Leu	p.F610L	ENST00000264657	NM_139276.2	610	Ttc/Ctc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696381	47696381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	95	415	0	ENST00000347630.2:c.442G>T	p.Gly148Trp	p.G148W	ENST00000347630	NM_001007230.1	148	Ggg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436128	56436128	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	159	518	0	ENST00000407977.2:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000407977		337	Cga/Tga																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	88	377	0	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885995	59885995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	96	358	0	ENST00000259008.2:c.751C>T	p.Arg251Cys	p.R251C	ENST00000259008	NM_032043.2	251	Cgc/Tgc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554530	63554530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	111	497	0	ENST00000307078.5:c.209C>A	p.Ser70Tyr	p.S70Y	ENST00000307078	NM_004655.3	70	tCt/tAt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78599496	78599496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	84	322	0	ENST00000306801.3:c.168G>T	p.Lys56Asn	p.K56N	ENST00000306801	NM_020761.2	56	aaG/aaT																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78681713	78681713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	102	446	0	ENST00000306801.3:c.421G>A	p.Ala141Thr	p.A141T	ENST00000306801	NM_020761.2	141	Gcc/Acc																																																																														
YES1	7525	MSKCC	GRCh37	18	743020	743020	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	95	445	0	ENST00000314574.4:c.958G>T	p.Glu320Ter	p.E320*	ENST00000314574	NM_005433.3	320	Gaa/Taa																																																																														
YES1	7525	MSKCC	GRCh37	18	743338	743338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	94	375	0	ENST00000314574.4:c.802G>T	p.Asp268Tyr	p.D268Y	ENST00000314574	NM_005433.3	268	Gat/Tat																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39575856	39575856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	48	187	0	ENST00000262039.4:c.789G>T	p.Glu263Asp	p.E263D	ENST00000262039	NM_002647.2	263	gaG/gaT																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45394731	45394731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	67	347	0	ENST00000262160.6:c.618C>A	p.Phe206Leu	p.F206L	ENST00000262160	NM_005901.5	206	ttC/ttA																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45422959	45422959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	86	234	0	ENST00000262160.6:c.169C>T	p.Arg57Ter	p.R57*	ENST00000262160	NM_005901.5	57	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573560	48573560	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	20	197	1	ENST00000342988.3:c.144G>T	p.Lys48Asn	p.K48N	ENST00000342988	NM_005359.5	48	aaG/aaT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584577	48584577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	61	350	0	ENST00000342988.3:c.750G>T	p.Gln250His	p.Q250H	ENST00000342988	NM_005359.5	250	caG/caT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604832	48604832	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	62	224	0	ENST00000342988.3:c.1654G>T	p.Asp552Tyr	p.D552Y	ENST00000342988	NM_005359.5	552	Gac/Tac																																																																														
STK11	6794	MSKCC	GRCh37	19	1218484	1218484	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	122	392	0	ENST00000326873.7:c.359A>T	p.Glu120Val	p.E120V	ENST00000326873	NM_000455.4	120	gAa/gTa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619401	1619401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200307903		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	235	759	2	ENST00000344749.5:c.1240G>A	p.Asp414Asn	p.D414N	ENST00000344749	NM_001136139.2	414	Gac/Aac																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099307	4099307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	209	781	0	ENST00000262948.5:c.811G>A	p.Asp271Asn	p.D271N	ENST00000262948	NM_030662.3	271	Gac/Aac																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099411	4099411	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	202	600	0	ENST00000262948.5:c.707C>T	p.Pro236Leu	p.P236L	ENST00000262948	NM_030662.3	236	cCg/cTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220365	5220365	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	117	391	3	ENST00000357368.4:c.3456-1G>T		p.X1152_splice	ENST00000357368	NM_002850.3	1152																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5229660	5229660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	34	68	0	ENST00000357368.4:c.2191G>A	p.Ala731Thr	p.A731T	ENST00000357368	NM_002850.3	731	Gcg/Acg																																																																														
INSR	3643	MSKCC	GRCh37	19	7267479	7267479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	45	406	0	ENST00000302850.5:c.529G>T	p.Asp177Tyr	p.D177Y	ENST00000302850	NM_000208.2	177	Gat/Tat																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602404	10602404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	244	757	2	ENST00000171111.5:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000171111	NM_203500.1	392	Gcc/Acc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100016	11100016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	140	534	0	ENST00000344626.4:c.1142G>A	p.Arg381Gln	p.R381Q	ENST00000344626	NM_003072.3	381	cGa/cAa																																																																														
CALR	811	MSKCC	GRCh37	19	13051678	13051678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	61	408	0	ENST00000316448.5:c.937G>A	p.Val313Met	p.V313M	ENST00000316448	NM_004343.3	313	Gtg/Atg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291588	15291588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	51	749	0	ENST00000263388.2:c.3046G>A	p.Val1016Ile	p.V1016I	ENST00000263388	NM_000435.2	1016	Gtc/Atc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299917	15299917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	220	807	0	ENST00000263388.2:c.1261C>T	p.Arg421Cys	p.R421C	ENST00000263388	NM_000435.2	421	Cgt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300192	15300192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	38	602	0	ENST00000263388.2:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000263388	NM_000435.2	362	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303052	15303052	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151016108		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	206	836	2	ENST00000263388.2:c.398G>A	p.Arg133His	p.R133H	ENST00000263388	NM_000435.2	133	cGc/cAc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950379	17950379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	49	641	0	ENST00000458235.1:c.1348C>A	p.Leu450Ile	p.L450I	ENST00000458235	NM_000215.3	450	Ctt/Att																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953230	17953230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	177	749	0	ENST00000458235.1:c.756G>T	p.Glu252Asp	p.E252D	ENST00000458235	NM_000215.3	252	gaG/gaT																																																																														
UPF1	5976	MSKCC	GRCh37	19	18971733	18971733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	217	580	0	ENST00000262803.5:c.2399G>A	p.Arg800His	p.R800H	ENST00000262803	NM_002911.3	800	cGc/cAc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260037	19260037	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	42	506	0	ENST00000162023.5:c.256G>A	p.Glu86Lys	p.E86K	ENST00000162023		86	Gag/Aag																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792496	33792496	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	96	376	0	ENST00000498907.2:c.825G>T	p.Lys275Asn	p.K275N	ENST00000498907	NM_004364.3	275	aaG/aaT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212191	36212191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	120	439	0	ENST00000222270.7:c.1942C>T	p.Arg648Trp	p.R648W	ENST00000222270	NM_014727.1	648	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213563	36213563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	216	784	0	ENST00000222270.7:c.2665G>T	p.Asp889Tyr	p.D889Y	ENST00000222270	NM_014727.1	889	Gat/Tat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213599	36213599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	210	739	1	ENST00000222270.7:c.2701C>T	p.Arg901Trp	p.R901W	ENST00000222270	NM_014727.1	901	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213989	36213989	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	52	736	0	ENST00000222270.7:c.2815A>G	p.Thr939Ala	p.T939A	ENST00000222270	NM_014727.1	939	Aca/Gca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216490	36216490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	225	712	2	ENST00000222270.7:c.3753C>A	p.Phe1251Leu	p.F1251L	ENST00000222270	NM_014727.1	1251	ttC/ttA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220895	36220895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	46	274	0	ENST00000222270.7:c.4945G>A	p.Ala1649Thr	p.A1649T	ENST00000222270	NM_014727.1	1649	Gcc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223523	36223523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	177	807	0	ENST00000222270.7:c.6073G>A	p.Glu2025Lys	p.E2025K	ENST00000222270	NM_014727.1	2025	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223977	36223977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	224	822	0	ENST00000222270.7:c.6527G>A	p.Ser2176Asn	p.S2176N	ENST00000222270	NM_014727.1	2176	aGc/aAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	224	707	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																														
AXL	558	MSKCC	GRCh37	19	41743987	41743987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	224	661	0	ENST00000301178.4:c.922C>T	p.Arg308Cys	p.R308C	ENST00000301178	NM_021913.4	308	Cgc/Tgc																																																																														
AXL	558	MSKCC	GRCh37	19	41754460	41754460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	192	577	0	ENST00000301178.4:c.1579C>T	p.Arg527Trp	p.R527W	ENST00000301178	NM_021913.4	527	Cgg/Tgg																																																																														
AXL	558	MSKCC	GRCh37	19	41765508	41765508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	133	551	0	ENST00000301178.4:c.2384G>T	p.Ser795Ile	p.S795I	ENST00000301178	NM_021913.4	795	aGt/aTt																																																																														
CD79A	973	MSKCC	GRCh37	19	42383267	42383267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	123	487	0	ENST00000221972.3:c.287T>C	p.Val96Ala	p.V96A	ENST00000221972	NM_021601.3	96	gTg/gCg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383679	42383679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	191	602	0	ENST00000221972.3:c.454C>A	p.Leu152Ile	p.L152I	ENST00000221972	NM_021601.3	152	Ctc/Atc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791292	42791292	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	185	620	0	ENST00000575354.2:c.352G>T	p.Glu118Ter	p.E118*	ENST00000575354	NM_015125.3	118	Gaa/Taa																																																																														
CIC	23152	MSKCC	GRCh37	19	42797228	42797228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	186	774	0	ENST00000575354.2:c.3590C>A	p.Ser1197Tyr	p.S1197Y	ENST00000575354	NM_015125.3	1197	tCt/tAt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868176	45868176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140175332		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	57	668	2	ENST00000391945.4:c.514G>A	p.Ala172Thr	p.A172T	ENST00000391945	NM_000400.3	172	Gct/Act																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45873414	45873414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	152	606	0	ENST00000391945.4:c.82C>T	p.Leu28Phe	p.L28F	ENST00000391945	NM_000400.3	28	Ctc/Ttc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906378	50906378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	122	779	2	ENST00000440232.2:c.1039C>T	p.Pro347Ser	p.P347S	ENST00000440232	NM_002691.3	347	Ccg/Tcg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910303	50910303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	152	682	0	ENST00000440232.2:c.1558C>A	p.Leu520Met	p.L520M	ENST00000440232	NM_002691.3	520	Ctg/Atg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910352	50910352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	203	675	1	ENST00000440232.2:c.1607C>T	p.Ala536Val	p.A536V	ENST00000440232	NM_002691.3	536	gCg/gTg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714546	52714546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	37	549	0	ENST00000322088.6:c.304A>G	p.Thr102Ala	p.T102A	ENST00000322088	NM_014225.5	102	Aca/Gca																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470480	25470480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	192	571	1	ENST00000264709.3:c.994G>A	p.Gly332Arg	p.G332R	ENST00000264709	NM_175629.2	332	Gga/Aga																																																																														
ALK	238	MSKCC	GRCh37	2	30142885	30142885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	187	618	1	ENST00000389048.3:c.641G>A	p.Arg214His	p.R214H	ENST00000389048	NM_004304.4	214	cGc/cAc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39240640	39240640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	66	323	0	ENST00000402219.2:c.2128C>A	p.Leu710Ile	p.L710I	ENST00000402219	NM_005633.3	710	Ctt/Att																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250039	39250039	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	24	408	0	ENST00000402219.2:c.1530C>A	p.Tyr510Ter	p.Y510*	ENST00000402219	NM_005633.3	510	taC/taA																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46588129	46588129	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	155	560	0	ENST00000263734.3:c.679G>T	p.Glu227Ter	p.E227*	ENST00000263734	NM_001430.4	227	Gaa/Taa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607473	46607473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	169	660	0	ENST00000263734.3:c.1662G>T	p.Glu554Asp	p.E554D	ENST00000263734	NM_001430.4	554	gaG/gaT																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47601018	47601018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	83	458	2	ENST00000263735.4:c.256G>T	p.Gly86Trp	p.G86W	ENST00000263735	NM_002354.2	86	Ggg/Tgg																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47602439	47602439	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	58	289	0	ENST00000263735.4:c.491+1G>A		p.X164_splice	ENST00000263735	NM_002354.2	164																																																																															
MSH2	4436	MSKCC	GRCh37	2	47656952	47656952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	67	242	1	ENST00000233146.2:c.1148G>A	p.Arg383Gln	p.R383Q	ENST00000233146	NM_000251.2	383	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026567	48026567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	73	306	0	ENST00000234420.5:c.1445G>A	p.Arg482Gln	p.R482Q	ENST00000234420	NM_000179.2	482	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030755	48030755	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	48	243	0	ENST00000234420.5:c.3369A>C	p.Glu1123Asp	p.E1123D	ENST00000234420	NM_000179.2	1123	gaA/gaC																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033753	48033753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	44	237	0	ENST00000234420.5:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000234420	NM_000179.2	1322	Gaa/Taa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61711231	61711231	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	45	339	0	ENST00000401558.2:c.2518G>T	p.Glu840Ter	p.E840*	ENST00000401558	NM_003400.3	840	Gaa/Taa																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96920688	96920688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	105	390	3	ENST00000258439.3:c.292G>A	p.Ala98Thr	p.A98T	ENST00000258439	NM_001193304.2	98	Gcc/Acc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99154436	99154436	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	116	421	0	ENST00000074304.5:c.578G>T	p.Arg193Met	p.R193M	ENST00000074304	NM_001134224.1	193	aGg/aTg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047286	128047286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	93	342	0	ENST00000285398.2:c.636G>T	p.Glu212Asp	p.E212D	ENST00000285398	NM_000122.1	212	gaG/gaT																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622585	158622585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	27	389	0	ENST00000263640.3:c.914G>A	p.Cys305Tyr	p.C305Y	ENST00000263640	NM_001105.4	305	tGc/tAc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095799	178095799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	57	339	0	ENST00000397062.3:c.1532C>A	p.Ala511Asp	p.A511D	ENST00000397062	NM_006164.4	511	gCt/gAt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096135	178096135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	28	359	1	ENST00000397062.3:c.1196C>A	p.Ser399Tyr	p.S399Y	ENST00000397062	NM_006164.4	399	tCt/tAt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096667	178096667	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	53	297	0	ENST00000397062.3:c.664G>T	p.Glu222Ter	p.E222*	ENST00000397062	NM_006164.4	222	Gaa/Taa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098889	178098889	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	92	339	0	ENST00000397062.3:c.156A>C	p.Lys52Asn	p.K52N	ENST00000397062	NM_006164.4	52	aaA/aaC																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682810	190682810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	58	293	0	ENST00000441310.2:c.492delA	p.Lys164AsnfsTer6	p.K164Nfs*6	ENST00000441310	NM_000534.4	162	gcA/gc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190718969	190718969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	19	190	0	ENST00000441310.2:c.971C>A	p.Ser324Tyr	p.S324Y	ENST00000441310	NM_000534.4	324	tCt/tAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257139	198257139	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	63	297	0	ENST00000335508.6:c.3803T>A	p.Ile1268Asn	p.I1268N	ENST00000335508	NM_012433.2	1268	aTt/aAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285224	198285224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	26	361	0	ENST00000335508.6:c.343C>T	p.Arg115Trp	p.R115W	ENST00000335508	NM_012433.2	115	Cgg/Tgg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198288699	198288699	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	43	263	0	ENST00000335508.6:c.29-1G>T		p.X10_splice	ENST00000335508	NM_012433.2	10																																																																															
CASP8	841	MSKCC	GRCh37	2	202136264	202136264	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	85	374	0	ENST00000358485.4:c.508G>T	p.Glu170Ter	p.E170*	ENST00000358485	NM_001080125.1	170	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251759	212251759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	91	258	0	ENST00000342788.4:c.3300G>T	p.Glu1100Asp	p.E1100D	ENST00000342788	NM_005235.2	1100	gaG/gaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589809	212589809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	93	307	0	ENST00000342788.4:c.733G>T	p.Asp245Tyr	p.D245Y	ENST00000342788	NM_005235.2	245	Gac/Tac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589875	212589875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	35	383	2	ENST00000342788.4:c.667G>A	p.Gly223Arg	p.G223R	ENST00000342788	NM_005235.2	223	Gga/Aga																																																																														
BARD1	580	MSKCC	GRCh37	2	215595163	215595163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	28	289	0	ENST00000260947.4:c.1973G>A	p.Arg658His	p.R658H	ENST00000260947	NM_000465.2	658	cGc/cAc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225379427	225379427	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	24	401	0	ENST00000264414.4:c.441del	p.Arg148GlufsTer21	p.R148Efs*21	ENST00000264414	NM_003590.4	147	ttT/tt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662143	227662143	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	135	582	0	ENST00000305123.5:c.1312T>C	p.Phe438Leu	p.F438L	ENST00000305123	NM_005544.2	438	Ttc/Ctc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663379	227663379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	95	448	0	ENST00000305123.5:c.76C>T	p.His26Tyr	p.H26Y	ENST00000305123	NM_005544.2	26	Cac/Tac																																																																														
PAK7	0	MSKCC	GRCh37	20	9561186	9561186	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	26	386	0	ENST00000353224.5:c.596A>G	p.Tyr199Cys	p.Y199C	ENST00000353224	NM_177990.2	199	tAt/tGt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022569	31022569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	109	427	0	ENST00000375687.4:c.2054G>A	p.Gly685Glu	p.G685E	ENST00000375687	NM_015338.5	685	gGa/gAa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31025088	31025088	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139397200		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	92	404	0	ENST00000375687.4:c.4573G>A	p.Asp1525Asn	p.D1525N	ENST00000375687	NM_015338.5	1525	Gat/Aat																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31383280	31383280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	138	427	1	ENST00000328111.2:c.1192C>T	p.Arg398Cys	p.R398C	ENST00000328111	NM_006892.3	398	Cgc/Tgc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386391	31386391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	204	597	0	ENST00000328111.2:c.1616G>A	p.Arg539Gln	p.R539Q	ENST00000328111	NM_006892.3	539	cGg/cAg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39725963	39725963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	32	198	0	ENST00000361337.2:c.834C>A	p.Phe278Leu	p.F278L	ENST00000361337	NM_003286.2	278	ttC/ttA																																																																														
TOP1	7150	MSKCC	GRCh37	20	39728706	39728706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	41	165	0	ENST00000361337.2:c.986A>G	p.Glu329Gly	p.E329G	ENST00000361337	NM_003286.2	329	gAg/gGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827900	40827900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	125	408	0	ENST00000373198.4:c.2528C>A	p.Ser843Tyr	p.S843Y	ENST00000373198	NM_133170.3	843	tCt/tAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980730	40980730	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	20	321	1	ENST00000373198.4:c.1756A>C	p.Ile586Leu	p.I586L	ENST00000373198	NM_133170.3	586	Att/Ctt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101086	41101086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	142	590	1	ENST00000373198.4:c.1270G>A	p.Val424Met	p.V424M	ENST00000373198	NM_133170.3	424	Gtg/Atg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751886972		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	162	610	0	ENST00000373198.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000373198	NM_133170.3	413	gCg/gTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306800	41306800	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	64	272	0	ENST00000373198.4:c.860-1G>T		p.X287_splice	ENST00000373198	NM_133170.3	287																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62290764	62290764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	29	181	0	ENST00000508582.2:c.9G>T	p.Lys3Asn	p.K3N	ENST00000508582		3	aaG/aaT																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62311264	62311264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	103	324	0	ENST00000508582.2:c.1172A>G	p.Asp391Gly	p.D391G	ENST00000508582		391	gAc/gGc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62320883	62320883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200847054		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	213	801	0	ENST00000508582.2:c.1979C>T	p.Thr660Met	p.T660M	ENST00000508582		660	aCg/aTg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171607	36171607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	21	252	0	ENST00000300305.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000300305		320	Cga/Tga																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42839671	42839671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	140	473	0	ENST00000398585.3:c.1568G>A	p.Arg523Gln	p.R523Q	ENST00000398585	NM_001135099.1	523	cGa/cAa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866439	42866439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61735791		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	231	613	3	ENST00000398585.3:c.193G>A	p.Ala65Thr	p.A65T	ENST00000398585	NM_001135099.1	65	Gca/Aca																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655272	45655272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	173	607	1	ENST00000407780.3:c.580C>T	p.Arg194Trp	p.R194W	ENST00000407780	NM_001283052.1	194	Cgg/Tgg																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22162026	22162026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	39	344	0	ENST00000215832.6:c.229C>T	p.Arg77Cys	p.R77C	ENST00000215832	NM_002745.4	77	Cgc/Tgc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175890	24175890	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	92	373	0	ENST00000263121.7:c.1118G>T	p.Arg373Met	p.R373M	ENST00000263121	NM_003073.3	373	aGg/aTg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130460	29130460	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	113	509	0	ENST00000328354.6:c.250G>T	p.Glu84Ter	p.E84*	ENST00000328354	NM_007194.3	84	Gaa/Taa																																																																														
NF2	4771	MSKCC	GRCh37	22	30038202	30038202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	62	361	0	ENST00000338641.4:c.375G>T	p.Gln125His	p.Q125H	ENST00000338641	NM_000268.3	125	caG/caT																																																																														
EP300	2033	MSKCC	GRCh37	22	41536262	41536262	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	62	342	1	ENST00000263253.7:c.1878+1G>T		p.X626_splice	ENST00000263253	NM_001429.3	626																																																																															
PPARG	5468	MSKCC	GRCh37	3	12422845	12422845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	47	328	0	ENST00000287820.6:c.335C>A	p.Ser112Tyr	p.S112Y	ENST00000287820	NM_015869.4	112	tCt/tAt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12475445	12475445	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	136	442	0	ENST00000287820.6:c.1319A>G	p.Asn440Ser	p.N440S	ENST00000287820	NM_015869.4	440	aAc/aGc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12650270	12650270	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	73	342	0	ENST00000251849.4:c.576A>C	p.Gln192His	p.Q192H	ENST00000251849	NM_002880.3	192	caA/caC																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729962	30729962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	111	290	0	ENST00000359013.4:c.1558C>T	p.Arg520Ter	p.R520*	ENST00000359013	NM_001024847.2	520	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266898	41266898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	48	345	0	ENST00000349496.5:c.569G>A	p.Arg190His	p.R190H	ENST00000349496	NM_001904.3	190	cGt/cAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47144907	47144907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	54	281	0	ENST00000409792.3:c.4846G>T	p.Asp1616Tyr	p.D1616Y	ENST00000409792	NM_014159.6	1616	Gat/Tat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158212	47158212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	55	346	0	ENST00000409792.3:c.4487G>A	p.Arg1496Gln	p.R1496Q	ENST00000409792	NM_014159.6	1496	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164311	47164311	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	15	249	0	ENST00000409792.3:c.1815A>C	p.Lys605Asn	p.K605N	ENST00000409792	NM_014159.6	605	aaA/aaC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164573	47164573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	56	257	0	ENST00000409792.3:c.1553C>A	p.Ser518Tyr	p.S518Y	ENST00000409792	NM_014159.6	518	tCt/tAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164963	47164963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	32	263	0	ENST00000409792.3:c.1163G>A	p.Arg388Gln	p.R388Q	ENST00000409792	NM_014159.6	388	cGg/cAg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49939856	49939856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	189	663	0	ENST00000296474.3:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000296474	NM_002447.2	396	cGa/cAa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620629	52620629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	124	365	0	ENST00000394830.3:c.3124A>G	p.Thr1042Ala	p.T1042A	ENST00000394830	NM_018313.4	1042	Acc/Gcc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668641	52668641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	62	372	0	ENST00000394830.3:c.1278G>A	p.Met426Ile	p.M426I	ENST00000394830	NM_018313.4	426	atG/atA																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52692244	52692244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	82	259	0	ENST00000394830.3:c.616G>A	p.Glu206Lys	p.E206K	ENST00000394830	NM_018313.4	206	Gaa/Aaa																																																																														
MITF	4286	MSKCC	GRCh37	3	70014052	70014052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	79	366	0	ENST00000352241.4:c.1216C>A	p.Leu406Ile	p.L406I	ENST00000352241	NM_198159.2	406	Ctc/Atc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026835	71026835	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	17	231	0	ENST00000318789.4:c.1387G>T	p.Glu463Ter	p.E463*	ENST00000318789	NM_032682.5	463	Gaa/Taa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71102918	71102918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148369068		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	30	189	0	ENST00000318789.4:c.289G>A	p.Val97Met	p.V97M	ENST00000318789	NM_032682.5	97	Gtg/Atg																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73108219	73108219	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	13	61	0	ENST00000356692.5:c.319T>G	p.Leu107Val	p.L107V	ENST00000356692		107	Ttg/Gtg																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114168	73114168	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	48	263	1	ENST00000356692.5:c.804T>G	p.Ile268Met	p.I268M	ENST00000356692		268	atT/atG																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259085	89259085	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	59	268	0	ENST00000336596.2:c.229A>T	p.Ser77Cys	p.S77C	ENST00000336596	NM_005233.5	77	Agt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259104	89259104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	63	303	0	ENST00000336596.2:c.248G>T	p.Arg83Ile	p.R83I	ENST00000336596	NM_005233.5	83	aGa/aTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89478279	89478279	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	47	294	0	ENST00000336596.2:c.2098G>T	p.Glu700Ter	p.E700*	ENST00000336596	NM_005233.5	700	Gaa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498444	89498444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	46	216	0	ENST00000336596.2:c.2416G>A	p.Asp806Asn	p.D806N	ENST00000336596	NM_005233.5	806	Gat/Aat																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582379	119582379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	52	258	0	ENST00000316626.5:c.1022G>A	p.Arg341Gln	p.R341Q	ENST00000316626		341	cGa/cAa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200090	128200090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	48	647	0	ENST00000341105.2:c.1215G>T	p.Lys405Asn	p.K405N	ENST00000341105	NM_032638.4	405	aaG/aaT																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873039	134873039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	136	445	0	ENST00000398015.3:c.1343G>T	p.Arg448Met	p.R448M	ENST00000398015	NM_004441.4	448	aGg/aTg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138383891	138383891	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	54	329	0	ENST00000289153.2:c.2659G>T	p.Glu887Ter	p.E887*	ENST00000289153	NM_006219.2	887	Gaa/Taa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	55	267	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665257	138665257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	182	685	0	ENST00000330315.3:c.308G>C	p.Arg103Pro	p.R103P	ENST00000330315	NM_023067.3	103	cGc/cCc																																																																														
ATR	545	MSKCC	GRCh37	3	142185243	142185243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	49	397	0	ENST00000350721.4:c.6820C>A	p.Leu2274Met	p.L2274M	ENST00000350721	NM_001184.3	2274	Ctg/Atg																																																																														
ATR	545	MSKCC	GRCh37	3	142224067	142224067	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	81	445	0	ENST00000350721.4:c.5110G>T	p.Glu1704Ter	p.E1704*	ENST00000350721	NM_001184.3	1704	Gaa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142279272	142279272	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	60	339	0	ENST00000350721.4:c.1374A>C	p.Gln458His	p.Q458H	ENST00000350721	NM_001184.3	458	caA/caC																																																																														
ATR	545	MSKCC	GRCh37	3	142280234	142280234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	65	249	0	ENST00000350721.4:c.1200G>T	p.Leu400Phe	p.L400F	ENST00000350721	NM_001184.3	400	ttG/ttT																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169999726	169999726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	68	333	0	ENST00000295797.4:c.1037G>A	p.Arg346Gln	p.R346Q	ENST00000295797	NM_002740.5	346	cGa/cAa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170002311	170002311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	24	115	1	ENST00000295797.4:c.1130G>T	p.Arg377Ile	p.R377I	ENST00000295797	NM_002740.5	377	aGa/aTa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170009708	170009708	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	42	238	0	ENST00000295797.4:c.1270A>T	p.Ile424Phe	p.I424F	ENST00000295797	NM_002740.5	424	Att/Ttt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916855	178916855	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	85	410	0	ENST00000263967.3:c.242A>C	p.Glu81Ala	p.E81A	ENST00000263967	NM_006218.2	81	gAa/gCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917553	178917553	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	47	309	0	ENST00000263967.3:c.428T>G	p.Ile143Ser	p.I143S	ENST00000263967	NM_006218.2	143	aTt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928067	178928067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	70	423	0	ENST00000263967.3:c.1345C>A	p.Pro449Thr	p.P449T	ENST00000263967	NM_006218.2	449	Cct/Act																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928074	178928074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	70	409	0	ENST00000263967.3:c.1352G>T	p.Gly451Val	p.G451V	ENST00000263967	NM_006218.2	451	gGa/gTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178943818	178943818	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs199926184		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	20	214	0	ENST00000263967.3:c.2485C>A	p.Leu829Ile	p.L829I	ENST00000263967	NM_006218.2	829	Ctt/Att																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430440	181430440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	209	640	0	ENST00000325404.1:c.292C>T	p.Arg98Ter	p.R98*	ENST00000325404	NM_003106.3	98	Cga/Tga																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430744	181430744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	194	760	1	ENST00000325404.1:c.596G>A	p.Arg199His	p.R199H	ENST00000325404	NM_003106.3	199	cGc/cAc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430990	181430990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	200	617	0	ENST00000325404.1:c.842C>T	p.Ala281Val	p.A281V	ENST00000325404	NM_003106.3	281	gCc/gTc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146527	185146527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35961174		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	144	386	0	ENST00000265026.3:c.158G>A	p.Arg53Gln	p.R53Q	ENST00000265026	NM_004721.4	53	cGa/cAa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155246	185155246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	113	304	0	ENST00000265026.3:c.487G>A	p.Val163Met	p.V163M	ENST00000265026	NM_004721.4	163	Gtg/Atg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181393	185181393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	76	328	0	ENST00000265026.3:c.1334C>A	p.Thr445Asn	p.T445N	ENST00000265026	NM_004721.4	445	aCt/aAt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185183602	185183602	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	89	365	0	ENST00000265026.3:c.1456T>G	p.Leu486Val	p.L486V	ENST00000265026	NM_004721.4	486	Ttg/Gtg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191502	185191502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	173	542	0	ENST00000265026.3:c.2383C>A	p.Leu795Ile	p.L795I	ENST00000265026	NM_004721.4	795	Ctc/Atc																																																																														
BCL6	604	MSKCC	GRCh37	3	187443345	187443345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	111	317	0	ENST00000232014.4:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000232014	NM_001130845.1	594	cGa/cAa																																																																														
BCL6	604	MSKCC	GRCh37	3	187446227	187446227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	42	609	0	ENST00000232014.4:c.1461G>T	p.Glu487Asp	p.E487D	ENST00000232014	NM_001130845.1	487	gaG/gaT																																																																														
TP63	8626	MSKCC	GRCh37	3	189585700	189585700	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	117	332	0	ENST00000264731.3:c.961A>C	p.Ile321Leu	p.I321L	ENST00000264731	NM_003722.4	321	Att/Ctt																																																																														
TP63	8626	MSKCC	GRCh37	3	189612212	189612212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	90	425	0	ENST00000264731.3:c.1964G>A	p.Arg655Gln	p.R655Q	ENST00000264731	NM_003722.4	655	cGa/cAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127414	55127414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	113	443	0	ENST00000257290.5:c.202G>A	p.Asp68Asn	p.D68N	ENST00000257290	NM_006206.4	68	Gat/Aat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127534	55127534	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	79	268	0	ENST00000257290.5:c.322G>T	p.Glu108Ter	p.E108*	ENST00000257290	NM_006206.4	108	Gaa/Taa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133628	55133628	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	57	362	0	ENST00000257290.5:c.931+1G>A		p.X311_splice	ENST00000257290	NM_006206.4	311																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141123	55141123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	17	299	0	ENST00000257290.5:c.1769G>T	p.Arg590Ile	p.R590I	ENST00000257290	NM_006206.4	590	aGa/aTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161380	55161380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	117	378	0	ENST00000257290.5:c.3211G>A	p.Asp1071Asn	p.D1071N	ENST00000257290	NM_006206.4	1071	Gac/Aac																																																																														
KIT	3815	MSKCC	GRCh37	4	55565871	55565871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	53	389	0	ENST00000288135.5:c.695C>T	p.Thr232Met	p.T232M	ENST00000288135	NM_000222.2	232	aCg/aTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55604658	55604658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	101	439	2	ENST00000288135.5:c.2866C>T	p.Arg956Trp	p.R956W	ENST00000288135	NM_000222.2	956	Cgg/Tgg																																																																														
KDR	3791	MSKCC	GRCh37	4	55962463	55962463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	61	327	0	ENST00000263923.4:c.2661G>T	p.Lys887Asn	p.K887N	ENST00000263923	NM_002253.2	887	aaG/aaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55976641	55976641	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	61	437	0	ENST00000263923.4:c.1184A>C	p.Asn395Thr	p.N395T	ENST00000263923	NM_002253.2	395	aAt/aCt																																																																														
KDR	3791	MSKCC	GRCh37	4	55987327	55987327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	40	317	0	ENST00000263923.4:c.98G>T	p.Arg33Met	p.R33M	ENST00000263923	NM_002253.2	33	aGg/aTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197796	66197796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	31	238	0	ENST00000273854.3:c.2903G>T	p.Arg968Ile	p.R968I	ENST00000273854	NM_004439.5	968	aGa/aTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286229	66286229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	32	249	0	ENST00000273854.3:c.1457C>A	p.Ser486Tyr	p.S486Y	ENST00000273854	NM_004439.5	486	tCt/tAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356200	66356200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	97	427	1	ENST00000273854.3:c.1297G>A	p.Ala433Thr	p.A433T	ENST00000273854	NM_004439.5	433	Gct/Act																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361207	66361207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	54	265	0	ENST00000273854.3:c.965G>A	p.Cys322Tyr	p.C322Y	ENST00000273854	NM_004439.5	322	tGt/tAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467554	66467554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	66	255	0	ENST00000273854.3:c.715C>T	p.His239Tyr	p.H239Y	ENST00000273854	NM_004439.5	239	Cac/Tac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467751	66467751	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	63	286	0	ENST00000273854.3:c.518A>C	p.Lys173Thr	p.K173T	ENST00000273854	NM_004439.5	173	aAa/aCa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467942	66467942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	53	278	0	ENST00000273854.3:c.327G>T	p.Gln109His	p.Q109H	ENST00000273854	NM_004439.5	109	caG/caT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535316	66535316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	200	647	0	ENST00000273854.3:c.145G>A	p.Ala49Thr	p.A49T	ENST00000273854	NM_004439.5	49	Gca/Aca																																																																														
TET2	54790	MSKCC	GRCh37	4	106155596	106155596	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	47	318	0	ENST00000380013.4:c.497T>A	p.Phe166Tyr	p.F166Y	ENST00000380013	NM_001127208.2	166	tTt/tAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106156196	106156196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	73	228	0	ENST00000380013.4:c.1097G>A	p.Ser366Asn	p.S366N	ENST00000380013	NM_001127208.2	366	aGc/aAc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003187	143003187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	45	252	0	ENST00000262992.4:c.2639G>T	p.Arg880Ile	p.R880I	ENST00000262992	NM_001101669.1	880	aGa/aTa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143129653	143129653	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	163	308	0	ENST00000262992.4:c.997G>T	p.Gly333Ter	p.G333*	ENST00000262992	NM_001101669.1	333	Gga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	133	357	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517778	187517778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	74	237	0	ENST00000441802.2:c.12916C>T	p.Pro4306Ser	p.P4306S	ENST00000441802	NM_005245.3	4306	Cca/Tca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524834	187524834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	82	470	0	ENST00000441802.2:c.10846G>A	p.Val3616Ile	p.V3616I	ENST00000441802	NM_005245.3	3616	Gta/Ata																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530465	187530465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	59	278	0	ENST00000441802.2:c.10078G>A	p.Asp3360Asn	p.D3360N	ENST00000441802	NM_005245.3	3360	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540091	187540091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	59	308	0	ENST00000441802.2:c.7649C>A	p.Thr2550Asn	p.T2550N	ENST00000441802	NM_005245.3	2550	aCt/aAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554873	187554873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	44	314	0	ENST00000441802.2:c.4288G>A	p.Glu1430Lys	p.E1430K	ENST00000441802	NM_005245.3	1430	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628413	187628413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	121	518	0	ENST00000441802.2:c.2569G>A	p.Val857Met	p.V857M	ENST00000441802	NM_005245.3	857	Gtg/Atg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629037	187629037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	25	438	0	ENST00000441802.2:c.1945G>T	p.Asp649Tyr	p.D649Y	ENST00000441802	NM_005245.3	649	Gat/Tat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629277	187629277	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	98	447	0	ENST00000441802.2:c.1705T>C	p.Phe569Leu	p.F569L	ENST00000441802	NM_005245.3	569	Ttt/Ctt																																																																														
SDHA	6389	MSKCC	GRCh37	5	251552	251552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	143	445	0	ENST00000264932.6:c.1763C>T	p.Ser588Leu	p.S588L	ENST00000264932	NM_004168.2	588	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1293665	1293665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	166	862	0	ENST00000310581.5:c.1336C>T	p.Arg446Cys	p.R446C	ENST00000310581	NM_198253.2	446	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1293898	1293898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	227	821	1	ENST00000310581.5:c.1103C>T	p.Ser368Phe	p.S368F	ENST00000310581	NM_198253.2	368	tCc/tTc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38942979	38942979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	43	261	0	ENST00000357387.3:c.5008C>T	p.Arg1670Trp	p.R1670W	ENST00000357387	NM_152756.3	1670	Cgg/Tgg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950352	38950352	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	36	350	1	ENST00000357387.3:c.3598C>T	p.Arg1200Ter	p.R1200*	ENST00000357387	NM_152756.3	1200	Cga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39021178	39021178	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	45	254	0	ENST00000357387.3:c.158A>G	p.Asn53Ser	p.N53S	ENST00000357387	NM_152756.3	53	aAt/aGt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178426	56178426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	27	270	0	ENST00000399503.3:c.3399G>T	p.Glu1133Asp	p.E1133D	ENST00000399503	NM_005921.1	1133	gaG/gaT																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754638	57754638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	47	288	0	ENST00000274289.3:c.409C>A	p.Leu137Ile	p.L137I	ENST00000274289	NM_006622.3	137	Ctt/Att																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67575489	67575489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	81	274	0	ENST00000274335.5:c.562C>T	p.Arg188Cys	p.R188C	ENST00000274335		188	Cgc/Tgc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588096	67588096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	18	237	0	ENST00000274335.5:c.926C>A	p.Pro309His	p.P309H	ENST00000274335		309	cCt/cAt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	30	176	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	25	219	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																														
MSH3	4437	MSKCC	GRCh37	5	80074556	80074556	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199791286		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	79	320	1	ENST00000265081.6:c.2336G>A	p.Arg779His	p.R779H	ENST00000265081	NM_002439.4	779	cGc/cAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80149977	80149977	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	47	341	0	ENST00000265081.6:c.2842G>T	p.Gly948Ter	p.G948*	ENST00000265081	NM_002439.4	948	Gga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564527	86564527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	31	543	0	ENST00000274376.6:c.259A>G	p.Thr87Ala	p.T87A	ENST00000274376	NM_002890.2	87	Aca/Gca																																																																														
RASA1	5921	MSKCC	GRCh37	5	86637116	86637116	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	31	147	0	ENST00000274376.6:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000274376	NM_002890.2	343	Gaa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86681153	86681153	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	13	245	0	ENST00000274376.6:c.2794T>G	p.Leu932Val	p.L932V	ENST00000274376	NM_002890.2	932	Tta/Gta																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685312	86685312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	45	142	0	ENST00000274376.6:c.3028C>T	p.Arg1010Ter	p.R1010*	ENST00000274376	NM_002890.2	1010	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173606	112173606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	38	233	0	ENST00000257430.4:c.2315C>T	p.Thr772Ile	p.T772I	ENST00000257430	NM_000038.5	772	aCt/aTt																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	44	239	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174526	112174526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	44	275	0	ENST00000257430.4:c.3235A>G	p.Thr1079Ala	p.T1079A	ENST00000257430	NM_000038.5	1079	Act/Gct																																																																														
APC	324	MSKCC	GRCh37	5	112176846	112176846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	48	290	0	ENST00000257430.4:c.5555C>A	p.Thr1852Asn	p.T1852N	ENST00000257430	NM_000038.5	1852	aCt/aAt																																																																														
APC	324	MSKCC	GRCh37	5	112177991	112177991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	65	272	0	ENST00000257430.4:c.6700C>A	p.Pro2234Thr	p.P2234T	ENST00000257430	NM_000038.5	2234	Cca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112179017	112179017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	45	247	0	ENST00000257430.4:c.7726G>C	p.Ala2576Pro	p.A2576P	ENST00000257430	NM_000038.5	2576	Gct/Cct																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915673	131915673	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28903088		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	36	313	0	ENST00000265335.6:c.671G>A	p.Arg224His	p.R224H	ENST00000265335		224	cGt/cAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131940521	131940521	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181961360		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	34	227	0	ENST00000265335.6:c.2548C>T	p.Arg850Cys	p.R850C	ENST00000265335		850	Cgt/Tgt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131953794	131953794	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	43	245	0	ENST00000265335.6:c.3197A>C	p.Asn1066Thr	p.N1066T	ENST00000265335		1066	aAt/aCt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441071	149441071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	85	367	0	ENST00000286301.3:c.1841C>T	p.Ala614Val	p.A614V	ENST00000286301	NM_005211.3	614	gCt/gTt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505096	149505096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	33	509	0	ENST00000261799.4:c.1719C>A	p.Ser573Arg	p.S573R	ENST00000261799	NM_002609.3	573	agC/agA																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517993	176517993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	39	576	0	ENST00000292408.4:c.491C>T	p.Ala164Val	p.A164V	ENST00000292408	NM_213647.1	164	gCg/gTg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562752	176562752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	97	428	0	ENST00000439151.2:c.648G>T	p.Glu216Asp	p.E216D	ENST00000439151	NM_022455.4	216	gaG/gaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636760	176636760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	39	343	0	ENST00000439151.2:c.1360G>T	p.Asp454Tyr	p.D454Y	ENST00000439151	NM_022455.4	454	Gat/Tat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176687153	176687153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	82	352	0	ENST00000439151.2:c.5130C>A	p.Cys1710Ter	p.C1710*	ENST00000439151	NM_022455.4	1710	tgC/tgA																																																																														
FLT4	2324	MSKCC	GRCh37	5	180037026	180037026	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	63	455	0	ENST00000261937.6:c.3687-1G>T		p.X1229_splice	ENST00000261937	NM_182925.4	1229																																																																															
FLT4	2324	MSKCC	GRCh37	5	180041081	180041081	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201431522		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	53	671	0	ENST00000261937.6:c.3318G>T	p.Glu1106Asp	p.E1106D	ENST00000261937	NM_182925.4	1106	gaG/gaT																																																																														
FLT4	2324	MSKCC	GRCh37	5	180050958	180050958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	186	629	0	ENST00000261937.6:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000261937	NM_182925.4	509	Gag/Aag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056376	180056376	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	50	627	0	ENST00000261937.6:c.868G>T	p.Glu290Ter	p.E290*	ENST00000261937	NM_182925.4	290	Gaa/Taa																																																																														
IRF4	3662	MSKCC	GRCh37	6	393226	393226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	166	538	0	ENST00000380956.4:c.74G>A	p.Arg25His	p.R25H	ENST00000380956	NM_001195286.1	25	cGc/cAc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481461	20481461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	69	209	1	ENST00000346618.3:c.530C>T	p.Thr177Met	p.T177M	ENST00000346618	NM_001949.4	177	aCg/aTg																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225582	26225582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	129	552	0	ENST00000360408.1:c.200C>T	p.Pro67Leu	p.P67L	ENST00000360408	NM_003532.2	67	cCg/cTg																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858349	27858349	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	143	598	0	ENST00000359303.2:c.222A>C	p.Glu74Asp	p.E74D	ENST00000359303	NM_003535.2	74	gaA/gaC																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910404	29910404	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	169	737	0	ENST00000376809.5:c.73+1G>A		p.X25_splice	ENST00000376809	NM_002116.7	25																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911095	29911095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	57	784	0	ENST00000376809.5:c.394C>T	p.Arg132Cys	p.R132C	ENST00000376809	NM_002116.7	132	Cgc/Tgc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911128	29911128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	60	603	2	ENST00000376809.5:c.427G>A	p.Asp143Asn	p.D143N	ENST00000376809	NM_002116.7	143	Gac/Aac																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912169	29912169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	43	179	0	ENST00000376809.5:c.890G>T	p.Arg297Ile	p.R297I	ENST00000376809	NM_002116.7	297	aGa/aTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671741	30671741	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	156	491	0	ENST00000376406.3:c.5219A>T	p.Lys1740Met	p.K1740M	ENST00000376406	NM_014641.2	1740	aAg/aTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673634	30673634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	47	519	0	ENST00000376406.3:c.3326C>T	p.Thr1109Ile	p.T1109I	ENST00000376406	NM_014641.2	1109	aCt/aTt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681489	30681489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	53	332	2	ENST00000376406.3:c.523C>A	p.Leu175Ile	p.L175I	ENST00000376406	NM_014641.2	175	Ctt/Att																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681495	30681495	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	51	324	1	ENST00000376406.3:c.518-1G>T		p.X173_splice	ENST00000376406	NM_014641.2	173																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169935	32169935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142477287		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	161	660	1	ENST00000375023.3:c.3673C>T	p.Arg1225Trp	p.R1225W	ENST00000375023	NM_004557.3	1225	Cgg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169955	32169955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	166	706	0	ENST00000375023.3:c.3653C>A	p.Ser1218Tyr	p.S1218Y	ENST00000375023	NM_004557.3	1218	tCt/tAt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170103	32170103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	47	753	1	ENST00000375023.3:c.3505C>T	p.Arg1169Trp	p.R1169W	ENST00000375023	NM_004557.3	1169	Cgg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178588	32178588	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	161	598	0	ENST00000375023.3:c.2806T>A	p.Ser936Thr	p.S936T	ENST00000375023	NM_004557.3	936	Tcc/Acc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181952	32181952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	155	606	1	ENST00000375023.3:c.2102C>T	p.Ala701Val	p.A701V	ENST00000375023	NM_004557.3	701	gCc/gTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184804	32184804	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	137	513	0	ENST00000375023.3:c.1779C>A	p.Cys593Ter	p.C593*	ENST00000375023	NM_004557.3	593	tgC/tgA																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187447	32187447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	183	623	1	ENST00000375023.3:c.1432G>A	p.Glu478Lys	p.E478K	ENST00000375023	NM_004557.3	478	Gag/Aag																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797232	32797232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	194	642	0	ENST00000374899.4:c.1877G>A	p.Arg626Gln	p.R626Q	ENST00000374899	NM_018833.2	626	cGg/cAg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798533	32798533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	160	552	0	ENST00000374899.4:c.1323G>T	p.Glu441Asp	p.E441D	ENST00000374899	NM_018833.2	441	gaG/gaT																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805984	32805984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	150	560	0	ENST00000374899.4:c.27G>T	p.Trp9Cys	p.W9C	ENST00000374899	NM_018833.2	9	tgG/tgT																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287941	33287941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	75	377	0	ENST00000374542.5:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000374542	NM_001141970.1	438	Gaa/Aaa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288561	33288561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	110	358	4	ENST00000374542.5:c.991G>A	p.Asp331Asn	p.D331N	ENST00000374542	NM_001141970.1	331	Gat/Aat																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288599	33288599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	99	369	0	ENST00000374542.5:c.953G>A	p.Arg318Gln	p.R318Q	ENST00000374542	NM_001141970.1	318	cGa/cAa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652243	36652243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	185	578	0	ENST00000244741.5:c.365G>A	p.Arg122His	p.R122H	ENST00000244741	NM_000389.4	122	cGc/cAc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748500	43748500	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	63	249	0	ENST00000523873.1:c.454A>C	p.Lys152Gln	p.K152Q	ENST00000523873		152	Aaa/Caa																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793691	89793691	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	45	275	0	ENST00000336032.3:c.760A>C	p.Lys254Gln	p.K254Q	ENST00000336032	NM_006813.2	254	Aaa/Caa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109322654	109322654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	83	377	0	ENST00000436639.2:c.383C>A	p.Ala128Asp	p.A128D	ENST00000436639	NM_014454.2	128	gCt/gAt																																																																														
SESN1	27244	MSKCC	GRCh37	6	109415068	109415068	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	115	454	0	ENST00000436639.2:c.209T>G	p.Leu70Arg	p.L70R	ENST00000436639	NM_014454.2	70	cTt/cGt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638362	117638362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	60	311	0	ENST00000368508.3:c.6079G>A	p.Glu2027Lys	p.E2027K	ENST00000368508	NM_002944.2	2027	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117645540	117645540	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	58	437	0	ENST00000368508.3:c.5596A>G	p.Ile1866Val	p.I1866V	ENST00000368508	NM_002944.2	1866	Att/Gtt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663689	117663689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	29	222	0	ENST00000368508.3:c.4543G>A	p.Ala1515Thr	p.A1515T	ENST00000368508	NM_002944.2	1515	Gct/Act																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681540	117681540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	49	212	0	ENST00000368508.3:c.3410G>T	p.Gly1137Val	p.G1137V	ENST00000368508	NM_002944.2	1137	gGa/gTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117707025	117707025	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	39	288	0	ENST00000368508.3:c.2126-1G>T		p.X709_splice	ENST00000368508	NM_002944.2	709																																																																															
ROS1	6098	MSKCC	GRCh37	6	117710549	117710549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	32	172	0	ENST00000368508.3:c.1723G>A	p.Val575Ile	p.V575I	ENST00000368508	NM_002944.2	575	Gtt/Att																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710846	117710846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	61	339	0	ENST00000368508.3:c.1426G>T	p.Val476Phe	p.V476F	ENST00000368508	NM_002944.2	476	Gtc/Ttc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715423	117715423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	47	284	0	ENST00000368508.3:c.1066G>T	p.Val356Leu	p.V356L	ENST00000368508	NM_002944.2	356	Gta/Tta																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715787	117715787	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	55	293	0	ENST00000368508.3:c.971A>C	p.Asn324Thr	p.N324T	ENST00000368508	NM_002944.2	324	aAt/aCt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718123	117718123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	83	410	0	ENST00000368508.3:c.734G>T	p.Arg245Ile	p.R245I	ENST00000368508	NM_002944.2	245	aGa/aTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117737437	117737437	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	52	258	0	ENST00000368508.3:c.212A>G	p.Asn71Ser	p.N71S	ENST00000368508	NM_002944.2	71	aAc/aGc																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519451	137519451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	37	245	0	ENST00000367739.4:c.1187C>T	p.Ser396Leu	p.S396L	ENST00000367739	NM_000416.2	396	tCg/tTg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192486	138192486	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	74	258	0	ENST00000237289.4:c.122A>C	p.Lys41Thr	p.K41T	ENST00000237289	NM_001270507.1	41	aAa/aCa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004246	150004246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	39	212	0	ENST00000253339.5:c.1979G>A	p.Arg660His	p.R660H	ENST00000253339		660	cGt/cAt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004723	150004723	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	99	429	0	ENST00000253339.5:c.1502T>C	p.Met501Thr	p.M501T	ENST00000253339		501	aTg/aCg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522443	157522443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	151	528	0	ENST00000346085.5:c.4715C>A	p.Ser1572Tyr	p.S1572Y	ENST00000346085	NM_020732.3	1572	tCt/tAt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522598	157522598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	30	415	1	ENST00000346085.5:c.4870C>T	p.Arg1624Ter	p.R1624*	ENST00000346085	NM_020732.3	1624	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528230	157528230	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	104	445	0	ENST00000346085.5:c.5955T>G	p.His1985Gln	p.H1985Q	ENST00000346085	NM_020732.3	1985	caT/caG																																																																														
PARK2	0	MSKCC	GRCh37	6	162622212	162622212	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	24	332	0	ENST00000366898.1:c.485T>G	p.Leu162Arg	p.L162R	ENST00000366898	NM_004562.2	162	cTc/cGc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963878	2963878	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	139	468	1	ENST00000396946.4:c.1929C>A	p.Phe643Leu	p.F643L	ENST00000396946	NM_032415.4	643	ttC/ttA																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987422	2987422	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	80	317	0	ENST00000396946.4:c.8-1G>T		p.X3_splice	ENST00000396946	NM_032415.4	3																																																																															
PMS2	5395	MSKCC	GRCh37	7	6026990	6026990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	29	348	0	ENST00000265849.7:c.1406G>T	p.Arg469Ile	p.R469I	ENST00000265849	NM_000535.5	469	aGa/aTa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035238	6035238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1805322		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	18	267	0	ENST00000265849.7:c.830C>T	p.Thr277Met	p.T277M	ENST00000265849	NM_000535.5	277	aCg/aTg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946176	13946176	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	105	423	0	ENST00000405192.2:c.920A>G	p.Gln307Arg	p.Q307R	ENST00000405192	NM_001163147.1	307	cAa/cGa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971164	13971164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	26	258	0	ENST00000405192.2:c.765G>A	p.Met255Ile	p.M255I	ENST00000405192	NM_001163147.1	255	atG/atA																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729652	41729652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	48	486	0	ENST00000242208.4:c.877C>A	p.Leu293Ile	p.L293I	ENST00000242208	NM_002192.2	293	Ctc/Atc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730108	41730108	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	97	339	0	ENST00000242208.4:c.421T>G	p.Ser141Ala	p.S141A	ENST00000242208	NM_002192.2	141	Tcc/Gcc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739838	41739838	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	108	420	0	ENST00000242208.4:c.135G>T	p.Lys45Asn	p.K45N	ENST00000242208	NM_002192.2	45	aaG/aaT																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459493	50459493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	53	246	0	ENST00000331340.3:c.782C>A	p.Ser261Tyr	p.S261Y	ENST00000331340	NM_006060.4	261	tCt/tAt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459563	50459563	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	30	197	0	ENST00000331340.3:c.850+2T>C		p.X284_splice	ENST00000331340	NM_006060.4	284																																																																															
EGFR	1956	MSKCC	GRCh37	7	55087054	55087054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	89	262	0	ENST00000275493.2:c.84G>T	p.Lys28Asn	p.K28N	ENST00000275493	NM_005228.3	28	aaG/aaT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55240678	55240678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	182	625	0	ENST00000275493.2:c.1922C>A	p.Pro641His	p.P641H	ENST00000275493	NM_005228.3	641	cCt/cAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241659	55241659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	159	584	0	ENST00000275493.2:c.2107C>A	p.Leu703Ile	p.L703I	ENST00000275493	NM_005228.3	703	Ctc/Atc																																																																														
HGF	3082	MSKCC	GRCh37	7	81335730	81335730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	39	273	0	ENST00000222390.5:c.1630T>C	p.Tyr544His	p.Y544H	ENST00000222390	NM_000601.4	544	Tat/Cat																																																																														
CDK6	1021	MSKCC	GRCh37	7	92404119	92404119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	39	299	0	ENST00000265734.4:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000265734	NM_001259.6	87	cGa/cAa																																																																														
SMO	6608	MSKCC	GRCh37	7	128845485	128845485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	110	646	0	ENST00000249373.3:c.782G>A	p.Arg261His	p.R261H	ENST00000249373	NM_005631.4	261	cGc/cAc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148506449	148506449	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	50	328	0	ENST00000320356.2:c.2063A>C	p.Lys688Thr	p.K688T	ENST00000320356	NM_004456.4	688	aAa/aCa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148514990	148514990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	49	343	0	ENST00000320356.2:c.1219G>T	p.Asp407Tyr	p.D407Y	ENST00000320356	NM_004456.4	407	Gat/Tat																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523560	148523560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	43	145	1	ENST00000320356.2:c.893G>A	p.Arg298His	p.R298H	ENST00000320356	NM_004456.4	298	cGt/cAt																																																																														
RHEB	6009	MSKCC	GRCh37	7	151167659	151167659	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	78	253	0	ENST00000262187.5:c.460C>A	p.Gln154Lys	p.Q154K	ENST00000262187	NM_005614.3	154	Cag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845874	151845874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	62	470	2	ENST00000262189.6:c.13138G>T	p.Asp4380Tyr	p.D4380Y	ENST00000262189	NM_170606.2	4380	Gat/Tat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860512	151860512	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	124	421	1	ENST00000262189.6:c.10150G>T	p.Glu3384Ter	p.E3384*	ENST00000262189	NM_170606.2	3384	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860865	151860865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	85	311	0	ENST00000262189.6:c.9797G>A	p.Arg3266Gln	p.R3266Q	ENST00000262189	NM_170606.2	3266	cGg/cAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880153	151880153	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs138819584		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	49	354	0	ENST00000262189.6:c.5171G>T	p.Ser1724Ile	p.S1724I	ENST00000262189	NM_170606.2	1724	aGc/aTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891204	151891204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	33	357	0	ENST00000262189.6:c.4550G>A	p.Gly1517Glu	p.G1517E	ENST00000262189	NM_170606.2	1517	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151902232	151902232	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs559949839		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	83	305	0	ENST00000262189.6:c.3920C>T	p.Ser1307Phe	p.S1307F	ENST00000262189	NM_170606.2	1307	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945102	151945102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	24	295	0	ENST00000262189.6:c.2417C>T	p.Ser806Phe	p.S806F	ENST00000262189	NM_170606.2	806	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945109	151945109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	25	289	0	ENST00000262189.6:c.2410C>A	p.Leu804Ile	p.L804I	ENST00000262189	NM_170606.2	804	Ctt/Att																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012410	152012410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	26	202	0	ENST00000262189.6:c.403G>A	p.Ala135Thr	p.A135T	ENST00000262189	NM_170606.2	135	Gct/Act																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540300	23540300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	150	488	1	ENST00000380871.4:c.103C>A	p.Leu35Met	p.L35M	ENST00000380871	NM_006167.3	35	Ctg/Atg																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540358	23540359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	115	446	0	ENST00000380871.4:c.44_45insT	p.Glu15AspfsTer93	p.E15Dfs*93	ENST00000380871	NM_006167.3	15	gag/gaTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133224	38133224	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	29	463	0	ENST00000317025.8:c.4249G>T	p.Glu1417Ter	p.E1417*	ENST00000317025	NM_023034.1	1417	Gaa/Taa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38135923	38135923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	95	310	0	ENST00000317025.8:c.3768G>T	p.Glu1256Asp	p.E1256D	ENST00000317025	NM_023034.1	1256	gaG/gaT																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38184295	38184295	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	95	410	0	ENST00000317025.8:c.1661A>C	p.Lys554Thr	p.K554T	ENST00000317025	NM_023034.1	554	aAg/aCg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187065	38187065	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	168	581	0	ENST00000317025.8:c.1412A>C	p.Lys471Thr	p.K471T	ENST00000317025	NM_023034.1	471	aAa/aCa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38194933	38194933	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	130	425	0	ENST00000317025.8:c.800A>C	p.Lys267Thr	p.K267T	ENST00000317025	NM_023034.1	267	aAg/aCg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205323	38205323	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	165	602	1	ENST00000317025.8:c.367G>T	p.Glu123Ter	p.E123*	ENST00000317025	NM_023034.1	123	Gaa/Taa																																																																														
LYN	4067	MSKCC	GRCh37	8	56910911	56910911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	93	381	0	ENST00000519728.1:c.1057G>A	p.Glu353Lys	p.E353K	ENST00000519728	NM_002350.3	353	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005921	69005921	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	51	451	0	ENST00000288368.4:c.2332G>T	p.Asp778Tyr	p.D778Y	ENST00000288368	NM_024870.2	778	Gat/Tat																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978488	70978488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	79	346	0	ENST00000276594.2:c.1165C>T	p.Pro389Ser	p.P389S	ENST00000276594	NM_024504.3	389	Cca/Tca																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978658	70978658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	110	530	1	ENST00000276594.2:c.995G>A	p.Arg332His	p.R332H	ENST00000276594	NM_024504.3	332	cGc/cAc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981903	70981903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	36	709	2	ENST00000276594.2:c.193G>A	p.Ala65Thr	p.A65T	ENST00000276594	NM_024504.3	65	Gcc/Acc																																																																														
NBN	4683	MSKCC	GRCh37	8	90949275	90949275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	26	170	0	ENST00000265433.3:c.2213C>A	p.Ser738Tyr	p.S738Y	ENST00000265433	NM_002485.4	738	tCt/tAt																																																																														
NBN	4683	MSKCC	GRCh37	8	90958490	90958490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	77	278	0	ENST00000265433.3:c.1948C>A	p.Leu650Ile	p.L650I	ENST00000265433	NM_002485.4	650	Ctt/Att																																																																														
MYC	4609	MSKCC	GRCh37	8	128752646	128752646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	20	184	0	ENST00000377970.2:c.807G>T	p.Glu269Asp	p.E269D	ENST00000377970	NM_002467.4	269	gaG/gaT																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742557	145742557	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	161	671	0	ENST00000428558.2:c.231C>A	p.Cys77Ter	p.C77*	ENST00000428558	NM_004260.3	77	tgC/tgA																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054625	5054625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	38	191	0	ENST00000381652.3:c.677G>T	p.Arg226Met	p.R226M	ENST00000381652	NM_004972.3	226	aGg/aTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054643	5054643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	37	191	0	ENST00000381652.3:c.695G>T	p.Arg232Ile	p.R232I	ENST00000381652	NM_004972.3	232	aGa/aTa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5055687	5055687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	17	211	0	ENST00000381652.3:c.955G>A	p.Asp319Asn	p.D319N	ENST00000381652	NM_004972.3	319	Gat/Aat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078311	5078311	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	33	254	0	ENST00000381652.3:c.1998A>C	p.Glu666Asp	p.E666D	ENST00000381652	NM_004972.3	666	gaA/gaC																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080614	5080614	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	39	283	0	ENST00000381652.3:c.2365G>T	p.Asp789Tyr	p.D789Y	ENST00000381652	NM_004972.3	789	Gat/Tat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126730	5126730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	44	334	0	ENST00000381652.3:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000381652	NM_004972.3	1113	cGc/cAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341701	8341701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	52	349	0	ENST00000356435.5:c.4939G>A	p.Glu1647Lys	p.E1647K	ENST00000356435		1647	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341907	8341907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	49	312	0	ENST00000356435.5:c.4733C>T	p.Thr1578Ile	p.T1578I	ENST00000356435		1578	aCt/aTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389304	8389304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	20	412	0	ENST00000356435.5:c.4314C>A	p.Asp1438Glu	p.D1438E	ENST00000356435		1438	gaC/gaA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486301	8486301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	70	219	0	ENST00000356435.5:c.2516C>A	p.Ala839Asp	p.A839D	ENST00000356435		839	gCt/gAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507340	8507340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	46	297	1	ENST00000356435.5:c.1638C>A	p.Asn546Lys	p.N546K	ENST00000356435		546	aaC/aaA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507360	8507360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	49	290	1	ENST00000356435.5:c.1618C>T	p.Arg540Cys	p.R540C	ENST00000356435		540	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636826	8636826	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1353675904		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	73	289	0	ENST00000356435.5:c.83G>A	p.Arg28Gln	p.R28Q	ENST00000356435		28	cGa/cAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971105	21971105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	114	560	1	ENST00000304494.5:c.253G>A	p.Ala85Thr	p.A85T	ENST00000304494	NM_000077.4	85	Gct/Act																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971105	21971105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	114	560	1	ENST00000304494.5:c.253G>A	p.Ala85Thr	p.A85T	ENST00000304494	NM_000077.4	85	Gct/Act																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971105	21971105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	114	560	1	ENST00000304494.5:c.253G>A	p.Ala85Thr	p.A85T	ENST00000304494	NM_000077.4	85	Gct/Act																																																																														
TEK	7010	MSKCC	GRCh37	9	27190599	27190599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	30	495	0	ENST00000380036.4:c.1400C>A	p.Ser467Tyr	p.S467Y	ENST00000380036	NM_000459.3	467	tCt/tAt																																																																														
TEK	7010	MSKCC	GRCh37	9	27212743	27212743	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	128	530	0	ENST00000380036.4:c.2725A>C	p.Asn909His	p.N909H	ENST00000380036	NM_000459.3	909	Aac/Cac																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80336291	80336291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	62	255	1	ENST00000286548.4:c.1028C>T	p.Ala343Val	p.A343V	ENST00000286548	NM_002072.3	343	gCc/gTc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430538	80430538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	17	430	0	ENST00000286548.4:c.470C>T	p.Thr157Ile	p.T157I	ENST00000286548	NM_002072.3	157	aCc/aTc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317073	87317073	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	89	311	0	ENST00000277120.3:c.213-1G>T		p.X71_splice	ENST00000277120		71																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87366970	87366970	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	106	451	0	ENST00000277120.3:c.1366T>G	p.Leu456Val	p.L456V	ENST00000277120		456	Ttg/Gtg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482282	87482282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	32	441	0	ENST00000277120.3:c.1569G>T	p.Lys523Asn	p.K523N	ENST00000277120		523	aaG/aaT																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570220	87570220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	28	388	0	ENST00000277120.3:c.1960C>A	p.Leu654Met	p.L654M	ENST00000277120		654	Ctg/Atg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87636293	87636293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	72	495	2	ENST00000277120.3:c.2458C>A	p.His820Asn	p.H820N	ENST00000277120		820	Cat/Aat																																																																														
SYK	6850	MSKCC	GRCh37	9	93641149	93641149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	80	386	0	ENST00000375746.1:c.1495A>C	p.Asn499His	p.N499H	ENST00000375746	NM_001174167.1	499	Aat/Cat																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229575	98229575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	62	315	0	ENST00000331920.6:c.2383T>A	p.Phe795Ile	p.F795I	ENST00000331920	NM_000264.3	795	Ttc/Atc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907037	101907037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	46	197	0	ENST00000374994.4:c.997G>A	p.Asp333Asn	p.D333N	ENST00000374994	NM_004612.2	333	Gat/Aat																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250031	110250031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	199	680	0	ENST00000374672.4:c.644C>T	p.Pro215Leu	p.P215L	ENST00000374672	NM_004235.4	215	cCg/cTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759956	133759956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	197	655	0	ENST00000318560.5:c.2279C>T	p.Pro760Leu	p.P760L	ENST00000318560	NM_005157.4	760	cCg/cTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135776996	135776996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	122	381	0	ENST00000298552.3:c.2482C>T	p.Leu828Phe	p.L828F	ENST00000298552	NM_001162426.1	828	Ctc/Ttc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778000	135778000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	109	372	0	ENST00000298552.3:c.2383G>T	p.Glu795Ter	p.E795*	ENST00000298552	NM_001162426.1	795	Gaa/Taa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781380	135781380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	145	515	0	ENST00000298552.3:c.1585G>A	p.Ala529Thr	p.A529T	ENST00000298552	NM_001162426.1	529	Gcc/Acc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787731	135787731	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151309813		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	143	378	0	ENST00000298552.3:c.851G>A	p.Arg284His	p.R284H	ENST00000298552	NM_001162426.1	284	cGc/cAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135796804	135796804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	46	231	0	ENST00000298552.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000298552	NM_001162426.1	228	cGa/cAa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798786	135798786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	71	250	0	ENST00000298552.3:c.457G>T	p.Asp153Tyr	p.D153Y	ENST00000298552	NM_001162426.1	153	Gat/Tat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391602	139391602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	235	798	0	ENST00000277541.6:c.6589C>T	p.Leu2197Phe	p.L2197F	ENST00000277541	NM_017617.3	2197	Ctc/Ttc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396460	139396460	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	134	638	0	ENST00000277541.6:c.5465A>C	p.Lys1822Thr	p.K1822T	ENST00000277541	NM_017617.3	1822	aAg/aCg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139414004	139414004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	165	503	0	ENST00000277541.6:c.756G>T	p.Gln252His	p.Q252H	ENST00000277541	NM_017617.3	252	caG/caT																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317531	1317531	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	31	413	0				ENST00000381566																																																																																	
CRLF2	64109	MSKCC	GRCh37	X	1321319	1321319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	128	440	1	ENST00000381566.1:c.436C>A	p.Leu146Ile	p.L146I	ENST00000381566		146	Ctc/Atc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911630	39911630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	147	476	0	ENST00000378444.4:c.5000C>T	p.Ser1667Leu	p.S1667L	ENST00000378444	NM_001123385.1	1667	tCg/tTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922303	39922303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	71	317	0	ENST00000378444.4:c.3869C>A	p.Ser1290Tyr	p.S1290Y	ENST00000378444	NM_001123385.1	1290	tCt/tAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932212	39932212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	218	672	1	ENST00000378444.4:c.2387C>A	p.Thr796Asn	p.T796N	ENST00000378444	NM_001123385.1	796	aCt/aAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932732	39932732	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	204	633	0	ENST00000378444.4:c.1867G>T	p.Glu623Ter	p.E623*	ENST00000378444	NM_001123385.1	623	Gaa/Taa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44920632	44920632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	73	367	0	ENST00000377967.4:c.1393C>A	p.His465Asn	p.H465N	ENST00000377967	NM_021140.2	465	Cat/Aat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044865	47044865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	199	778	0	ENST00000329236.7:c.1957G>A	p.Ala653Thr	p.A653T	ENST00000329236	NM_001204466.1	653	Gcc/Acc																																																																														
ARAF	369	MSKCC	GRCh37	X	47428417	47428417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	134	488	0	ENST00000377045.4:c.1285G>T	p.Asp429Tyr	p.D429Y	ENST00000377045	NM_001654.4	429	Gat/Tat																																																																														
ARAF	369	MSKCC	GRCh37	X	47430809	47430809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	222	662	0	ENST00000377045.4:c.1774G>A	p.Asp592Asn	p.D592N	ENST00000377045	NM_001654.4	592	Gat/Aat																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247103	53247103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	123	443	0	ENST00000375401.3:c.397C>T	p.Arg133Trp	p.R133W	ENST00000375401	NM_004187.3	133	Cgg/Tgg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247506	53247506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	84	456	0	ENST00000375401.3:c.303G>T	p.Lys101Asn	p.K101N	ENST00000375401	NM_004187.3	101	aaG/aaT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410467	63410467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	142	628	0	ENST00000330258.3:c.2700G>T	p.Glu900Asp	p.E900D	ENST00000330258	NM_152424.3	900	gaG/gaT																																																																														
AR	367	MSKCC	GRCh37	X	66942740	66942740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	103	362	0	ENST00000374690.3:c.2521C>T	p.Arg841Cys	p.R841C	ENST00000374690	NM_000044.3	841	Cgt/Tgt																																																																														
MED12	9968	MSKCC	GRCh37	X	70345277	70345277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	98	474	0	ENST00000374080.3:c.2303G>A	p.Arg768His	p.R768H	ENST00000374080		768	cGc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70346956	70346956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	95	391	0	ENST00000374080.3:c.2823G>T	p.Gln941His	p.Q941H	ENST00000374080		941	caG/caT																																																																														
MED12	9968	MSKCC	GRCh37	X	70356449	70356449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	175	512	0	ENST00000374080.3:c.5344C>T	p.Arg1782Cys	p.R1782C	ENST00000374080		1782	Cgc/Tgc																																																																														
MED12	9968	MSKCC	GRCh37	X	70356469	70356469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	126	498	0	ENST00000374080.3:c.5364G>T	p.Lys1788Asn	p.K1788N	ENST00000374080		1788	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76763869	76763869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	90	448	0	ENST00000373344.5:c.7439G>T	p.Arg2480Ile	p.R2480I	ENST00000373344	NM_000489.3	2480	aGa/aTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76855926	76855926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	46	310	0	ENST00000373344.5:c.5674G>T	p.Asp1892Tyr	p.D1892Y	ENST00000373344	NM_000489.3	1892	Gac/Tac																																																																														
ATRX	546	MSKCC	GRCh37	X	76891466	76891466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	56	359	0	ENST00000373344.5:c.4639G>T	p.Glu1547Ter	p.E1547*	ENST00000373344	NM_000489.3	1547	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76920208	76920208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	34	348	0	ENST00000373344.5:c.3869G>T	p.Gly1290Val	p.G1290V	ENST00000373344	NM_000489.3	1290	gGa/gTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937745	76937745	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	64	376	0	ENST00000373344.5:c.3003delA	p.Val1002Ter	p.V1002*	ENST00000373344	NM_000489.3	1001	aaA/aa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937896	76937896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	21	452	0	ENST00000373344.5:c.2852C>T	p.Thr951Ile	p.T951I	ENST00000373344	NM_000489.3	951	aCc/aTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76939766	76939766	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	68	426	0	ENST00000373344.5:c.982G>T	p.Glu328Ter	p.E328*	ENST00000373344	NM_000489.3	328	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76949318	76949318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	25	303	0	ENST00000373344.5:c.479G>A	p.Arg160His	p.R160H	ENST00000373344	NM_000489.3	160	cGc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76949388	76949388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	52	300	0	ENST00000373344.5:c.409G>T	p.Asp137Tyr	p.D137Y	ENST00000373344	NM_000489.3	137	Gac/Tac																																																																														
ATRX	546	MSKCC	GRCh37	X	76952145	76952145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	32	330	0	ENST00000373344.5:c.290C>A	p.Pro97His	p.P97H	ENST00000373344	NM_000489.3	97	cCt/cAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76972715	76972715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	46	269	0	ENST00000373344.5:c.26G>T	p.Ser9Ile	p.S9I	ENST00000373344	NM_000489.3	9	aGc/aTc																																																																														
BTK	695	MSKCC	GRCh37	X	100611909	100611909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	28	454	0	ENST00000308731.7:c.1212C>A	p.Phe404Leu	p.F404L	ENST00000308731	NM_000061.2	404	ttC/ttA																																																																														
BTK	695	MSKCC	GRCh37	X	100629546	100629546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	32	461	1	ENST00000308731.7:c.218C>A	p.Pro73His	p.P73H	ENST00000308731	NM_000061.2	73	cCt/cAt																																																																														
BTK	695	MSKCC	GRCh37	X	100630242	100630242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	93	267	0	ENST00000308731.7:c.31C>A	p.Leu11Met	p.L11M	ENST00000308731	NM_000061.2	11	Ctg/Atg																																																																														
XIAP	331	MSKCC	GRCh37	X	123019660	123019660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	74	437	0	ENST00000355640.3:c.148G>T	p.Ala50Ser	p.A50S	ENST00000355640		50	Gca/Tca																																																																														
XIAP	331	MSKCC	GRCh37	X	123020196	123020196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	115	515	0	ENST00000355640.3:c.684C>A	p.Phe228Leu	p.F228L	ENST00000355640		228	ttC/ttA																																																																														
XIAP	331	MSKCC	GRCh37	X	123020224	123020224	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs111978474		P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	89	493	0	ENST00000355640.3:c.712C>T	p.Arg238Ter	p.R238*	ENST00000355640		238	Cga/Tga																																																																														
XIAP	331	MSKCC	GRCh37	X	123026591	123026591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	81	386	0	ENST00000355640.3:c.1067C>A	p.Thr356Asn	p.T356N	ENST00000355640		356	aCt/aAt																																																																														
XIAP	331	MSKCC	GRCh37	X	123040913	123040913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	57	328	0	ENST00000355640.3:c.1376C>A	p.Ala459Asp	p.A459D	ENST00000355640		459	gCt/gAt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205170	123205170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	27	271	0	ENST00000218089.9:c.2530G>A	p.Ala844Thr	p.A844T	ENST00000218089	NM_001042749.1	844	Gca/Aca																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215247	123215247	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	46	312	0	ENST00000218089.9:c.2793A>G	p.Ile931Met	p.I931M	ENST00000218089	NM_001042749.1	931	atA/atG																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217326	123217326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	26	449	0	ENST00000218089.9:c.2980C>T	p.Pro994Ser	p.P994S	ENST00000218089	NM_001042749.1	994	Cct/Tct																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217392	123217392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	60	321	0	ENST00000218089.9:c.3046A>G	p.Arg1016Gly	p.R1016G	ENST00000218089	NM_001042749.1	1016	Aga/Gga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224762	123224762	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	23	418	0	ENST00000218089.9:c.3526G>T	p.Glu1176Ter	p.E1176*	ENST00000218089	NM_001042749.1	1176	Gag/Tag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224771	123224771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	90	403	0	ENST00000218089.9:c.3535G>T	p.Ala1179Ser	p.A1179S	ENST00000218089	NM_001042749.1	1179	Gca/Tca																																																																														
STAG2	10735	MSKCC	GRCh37	X	123234433	123234433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	47	270	0	ENST00000218089.9:c.3793G>A	p.Val1265Met	p.V1265M	ENST00000218089	NM_001042749.1	1265	Gtg/Atg																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504138	123504138	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	65	313	0	ENST00000371139.4:c.314A>C	p.Lys105Thr	p.K105T	ENST00000371139	NM_001114937.2	105	aAg/aCg																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858047	152858047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	136	450	1	ENST00000406277.2:c.568G>A	p.Ala190Thr	p.A190T	ENST00000406277	NM_152274.4	190	Gcc/Acc																																																																														
SDHA	6389	MSKCC	GRCh37	5	225537	225537	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	20	140	0	ENST00000264932.6:c.316G>T	p.Gly106Ter	p.G106*	ENST00000264932	NM_004168.2	106	Gga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197805	66197805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	25	244	0	ENST00000273854.3:c.2894G>A	p.Gly965Glu	p.G965E	ENST00000273854	NM_004439.5	965	gGg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	96	529	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	202	464	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26923211	26923211	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	123	213	0	ENST00000381527.3:c.207A>C	p.Leu69Phe	p.L69F	ENST00000381527	NM_001260.1	69	ttA/ttC																																																																														
PALB2	79728	MSKCC	GRCh37	16	23634343	23634343	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	343	629	0	ENST00000261584.4:c.2943del	p.Ser981ArgfsTer9	p.S981Rfs*9	ENST00000261584	NM_024675.3	981	agT/ag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214586	5214586	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	194	556	0	ENST00000357368.4:c.4480G>T	p.Glu1494Ter	p.E1494*	ENST00000357368	NM_002850.3	1494	Gag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408896	41408896	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	197	477	0	ENST00000373198.4:c.530T>A	p.Ile177Asn	p.I177N	ENST00000373198	NM_133170.3	177	aTc/aAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294258	1294258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	192	575	0	ENST00000310581.5:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000310581	NM_198253.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175437	112175438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGTTTAGCAGATGTACTT			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	79	228	0	ENST00000257430.4:c.4147_4165dup	p.Ser1389TyrfsTer3	p.S1389Yfs*3	ENST00000257430	NM_000038.5	1382	-/ATGTTTAGCAGATGTACTT																																																																														
NBN	4683	MSKCC	GRCh37	8	90976648	90976648	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	27	396	0	ENST00000265433.3:c.984T>A	p.His328Gln	p.H328Q	ENST00000265433	NM_002485.4	328	caT/caA																																																																														
MED12	9968	MSKCC	GRCh37	X	70339575	70339575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	310	543	0	ENST00000374080.3:c.244C>T	p.Arg82Cys	p.R82C	ENST00000374080		82	Cgt/Tgt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	136	671	2	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																														
INSR	3643	MSKCC	GRCh37	19	7166285	7166285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	58	837	3	ENST00000302850.5:c.1741C>T	p.Arg581Trp	p.R581W	ENST00000302850	NM_000208.2	581	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578496	7578497	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0034302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	128	1113	0	ENST00000269305.4:c.431_433dup	p.Gln144dup	p.Q144dup	ENST00000269305	NM_001126112.2	144	ctg/cAGCtg																																																																														
APC	324	MSKCC	GRCh37	5	112174968	112174969	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0034302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	36	269	0	ENST00000257430.4:c.3679_3680del	p.Arg1227AlafsTer12	p.R1227Afs*12	ENST00000257430	NM_000038.5	1226	aAG/a																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020775	37020775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	42	596	0	ENST00000358127.4:c.70G>T	p.Gly24Trp	p.G24W	ENST00000358127	NM_001280556.1	24	Ggg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	41	556	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	57	662	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402595	20402595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	76	471	0	ENST00000346618.3:c.132C>A	p.Phe44Leu	p.F44L	ENST00000346618	NM_001949.4	44	ttC/ttA																																																																														
AKT3	10000	MSKCC	GRCh37	1	243736256	243736256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	22	340	0	ENST00000263826.5:c.791C>A	p.Ser264Tyr	p.S264Y	ENST00000263826	NM_005465.4	264	tCc/tAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574663	95574663	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	11	298	0	ENST00000343455.3:c.2434C>T	p.Gln812Ter	p.Q812*	ENST00000343455	NM_177438.2	812	Cag/Tag																																																																														
CIC	23152	MSKCC	GRCh37	19	42790923	42790932	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGTGGACGAA	TGTGGACGAA	-			P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	43	663	0	ENST00000575354.2:c.74_83del	p.Thr25AsnfsTer13	p.T25Nfs*13	ENST00000575354	NM_015125.3	23	gTGTGGACGAAt/gt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151882712	151882712	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	28	245	0	ENST00000262189.6:c.5013G>A	p.Trp1671Ter	p.W1671*	ENST00000262189	NM_170606.2	1671	tgG/tgA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692893	89692893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	34	296	0	ENST00000371953.3:c.377C>A	p.Ala126Asp	p.A126D	ENST00000371953	NM_000314.4	126	gCt/gAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0050060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	19	343	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	397	691	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
RB1	5925	MSKCC	GRCh37	13	49039220	49039220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	228	501	0	ENST00000267163.4:c.2300delA	p.Asn767IlefsTer43	p.N767Ifs*43	ENST00000267163	NM_000321.2	766	acA/ac																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50479213	50479213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	332	598	0	ENST00000394963.4:c.61G>T	p.Gly21Trp	p.G21W	ENST00000394963	NM_003076.4	21	Ggg/Tgg																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166467	118166467	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	122	425	0	ENST00000369448.3:c.977G>C	p.Arg326Pro	p.R326P	ENST00000369448	NM_017709.3	326	cGc/cCc																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871728	35871728	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	126	656	0	ENST00000216797.5:c.778del	p.Arg260AlafsTer13	p.R260Afs*13	ENST00000216797	NM_020529.2	260	Cgc/gc																																																																														
CD79B	974	MSKCC	GRCh37	17	62007221	62007221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	357	928	1	ENST00000392795.3:c.461A>T	p.Gln154Leu	p.Q154L	ENST00000392795	NM_001039933.1	154	cAg/cTg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56400666	56400667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	163	361	0	ENST00000348428.3:c.1263dup	p.Asn422GlufsTer8	p.N422Efs*8	ENST00000348428	NM_006785.3	420	-/G																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25458666	25458666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	277	586	0	ENST00000264709.3:c.2507G>T	p.Arg836Met	p.R836M	ENST00000264709	NM_175629.2	836	aGg/aTg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99179966	99179966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	228	817	0	ENST00000074304.5:c.1909C>G	p.Leu637Val	p.L637V	ENST00000074304	NM_001134224.1	637	Ctc/Gtc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141141	55141142	+	splice_donor_variant	Splice_Site	INS	-	-	A			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	149	343	0	ENST00000257290.5:c.1786+1_1786+2insA		p.X596_splice	ENST00000257290	NM_006206.4	596																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244098	153244098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	174	541	0	ENST00000281708.4:c.2059G>T	p.Gly687Trp	p.G687W	ENST00000281708	NM_033632.3	687	Ggg/Tgg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048716	180048716	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	325	987	2	ENST00000261937.6:c.1846T>A	p.Phe616Ile	p.F616I	ENST00000261937	NM_182925.4	616	Ttc/Atc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6037033	6037033	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	274	419	0	ENST00000265849.7:c.727G>T	p.Val243Phe	p.V243F	ENST00000265849	NM_000535.5	243	Gtt/Ttt																																																																														
TEK	7010	MSKCC	GRCh37	9	27197399	27197399	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	278	606	0	ENST00000380036.4:c.1711G>T	p.Glu571Ter	p.E571*	ENST00000380036	NM_000459.3	571	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112154969	112154969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			949	205	516	0	ENST00000257430.4:c.1240C>T	p.Arg414Cys	p.R414C	ENST00000257430	NM_000038.5	414	Cgc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488679	212488679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1148	234	528	1	ENST00000342788.4:c.2170C>A	p.Leu724Ile	p.L724I	ENST00000342788	NM_005235.2	724	Ctt/Att																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468474	89468474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			932	176	449	0	ENST00000336596.2:c.2008G>A	p.Glu670Lys	p.E670K	ENST00000336596	NM_005233.5	670	Gaa/Aaa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126095	2126095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			738	240	552	0	ENST00000219476.3:c.2666C>G	p.Ala889Gly	p.A889G	ENST00000219476	NM_000548.3	889	gCc/gGc																																																																														
ARAF	369	MSKCC	GRCh37	X	47430798	47430804	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCCA	GCACCCA	-			P-0003018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	221	248	0	ENST00000377045.4:c.1764_1770del	p.Thr589ProfsTer?	p.T589Pfs*?	ENST00000377045	NM_001654.4	588	cGCACCCAg/cg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6414401	6414401	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0003576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	37	110	0	ENST00000356142.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000356142	NM_018890.3	12	gGa/gTa																																																																														
MST1	4485	MSKCC	GRCh37	3	49725198	49725198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	15	113	1	ENST00000449682.2:c.227C>T	p.Pro76Leu	p.P76L	ENST00000449682	NM_020998.3	76	cCc/cTc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65344724	65344724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	76	257	0	ENST00000342505.4:c.313C>T	p.Leu105Phe	p.L105F	ENST00000342505	NM_002227.2	105	Ctc/Ttc																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519430	137519430	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	23	213	0	ENST00000367739.4:c.1208C>G	p.Ser403Cys	p.S403C	ENST00000367739	NM_000416.2	403	tCt/tGt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	34	510	3	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	43	465	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
NF1	4763	MSKCC	GRCh37	17	29667552	29667552	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	19	0	0	ENST00000358273.4:c.6951G>A	p.Trp2317Ter	p.W2317*	ENST00000358273	NM_001042492.2	2317	tgG/tgA																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750842	57750842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	17	0	0	ENST00000274289.3:c.1762G>T	p.Asp588Tyr	p.D588Y	ENST00000274289	NM_006622.3	588	Gat/Tat																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597400	10597401	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	55	560	1	ENST00000171111.5:c.1802_1803delinsTT	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGG/cTT																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935703	13935703	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	30	359	0	ENST00000405192.2:c.1153G>T	p.Glu385Ter	p.E385*	ENST00000405192	NM_001163147.1	385	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100186	27100186	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	27	383	0	ENST00000324856.7:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000324856	NM_006015.4	1328	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	220	608	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	265	531	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249092	55249092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	102	634	0	ENST00000275493.2:c.2390G>C	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	tGc/tCc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46583304	46583304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	57	417	1	ENST00000263734.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000263734	NM_001430.4	78	Gag/Aag																																																																														
FYN	2534	MSKCC	GRCh37	6	112015677	112015677	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	63	536	1	ENST00000368678.4:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000368678		389	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911951	32911951	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	63	568	0	ENST00000380152.3:c.3459G>C	p.Lys1153Asn	p.K1153N	ENST00000380152		1153	aaG/aaC																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40738997	40738997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	54	508	0	ENST00000373198.4:c.3287C>A	p.Ala1096Asp	p.A1096D	ENST00000373198	NM_133170.3	1096	gCt/gAt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739666	41739666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	50	632	1	ENST00000242208.4:c.307A>G	p.Ile103Val	p.I103V	ENST00000242208	NM_002192.2	103	Ata/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	253	472	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	118	340	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412647	63412648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			871	47	567	1	ENST00000330258.3:c.519dupT	p.Ser174Ter	p.S174*	ENST00000330258	NM_152424.3	173	-/T																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593615	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGGAAGGTTGTTG	AGTGGAAGGTTGTTG	GTGGA			P-0006875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	272	348	0	ENST00000288135.5:c.1667_1681delinsGTGGA	p.Gln556ArgfsTer5	p.Q556Rfs*5	ENST00000288135	NM_000222.2	556	cAGTGGAAGGTTGTTGag/cGTGGAag																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115279378	115279378	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0050211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	238	292	0	ENST00000438362.2:c.638+1G>C		p.X213_splice	ENST00000438362	NM_001242891.1	213																																																																															
KIT	3815	MSKCC	GRCh37	4	55593638	55593661	+	stop_gained	Nonsense_Mutation	DEL	TGTTTACATAGACCCAACACAACT	TGTTTACATAGACCCAACACAACT	GTG			P-0050211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	330	498	2	ENST00000288135.5:c.1704_1727delinsGTG	p.Tyr568_Leu576delinsTer	p.Y568_L576delins*	ENST00000288135	NM_000222.2	568	taTGTTTACATAGACCCAACACAACTt/taGTGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	450	519	14	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934602	9934602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	196	427	7	ENST00000330684.3:c.1553G>T	p.Arg518Leu	p.R518L	ENST00000330684	NM_001134407.1	518	cGt/cTt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176015395	176015395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	189	376	5	ENST00000367669.3:c.1343A>G	p.Tyr448Cys	p.Y448C	ENST00000367669	NM_022457.5	448	tAt/tGt																																																																														
RB1	5925	MSKCC	GRCh37	13	49039505	49039505	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	239	336	2	ENST00000267163.4:c.2489+1G>T		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092967	27092967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	237	347	6	ENST00000324856.7:c.2898G>T	p.Glu966Asp	p.E966D	ENST00000324856	NM_006015.4	966	gaG/gaT																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112588	2112588	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	468	625	12	ENST00000219476.3:c.1348G>T	p.Glu450Ter	p.E450*	ENST00000219476	NM_000548.3	450	Gag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234550	41234550	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	399	443	10	ENST00000357654.3:c.4228G>T	p.Glu1410Ter	p.E1410*	ENST00000357654	NM_007294.3	1410	Gaa/Taa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422507	225422507	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	245	346	7	ENST00000264414.4:c.133C>T	p.Gln45Ter	p.Q45*	ENST00000264414	NM_003590.4	45	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306676	41306676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	239	616	2	ENST00000373198.4:c.983G>C	p.Arg328Pro	p.R328P	ENST00000373198	NM_133170.3	328	cGc/cCc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152087	55152087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	416	614	4	ENST00000257290.5:c.2519C>A	p.Ala840Asp	p.A840D	ENST00000257290	NM_006206.4	840	gCc/gAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187426	32187426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1465	279	682	11	ENST00000375023.3:c.1453C>A	p.His485Asn	p.H485N	ENST00000375023	NM_004557.3	485	Cac/Aac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100132	157100132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	54	45	0	ENST00000346085.5:c.1069G>T	p.Gly357Cys	p.G357C	ENST00000346085	NM_020732.3	357	Ggc/Tgc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5029791	5029791	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	237	317	2	ENST00000381652.3:c.235C>G	p.Pro79Ala	p.P79A	ENST00000381652	NM_004972.3	79	Cct/Gct																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246459	53246459	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0050527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	184	253	3	ENST00000375401.3:c.523C>G	p.Gln175Glu	p.Q175E	ENST00000375401	NM_004187.3	175	Cag/Gag																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046982-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	22	355	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256019	16256019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	163	473	0	ENST00000375759.3:c.3284C>T	p.Ser1095Phe	p.S1095F	ENST00000375759	NM_015001.2	1095	tCt/tTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257746	16257746	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	85	438	1	ENST00000375759.3:c.5011G>T	p.Glu1671Ter	p.E1671*	ENST00000375759	NM_015001.2	1671	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056313	27056313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	87	499	0	ENST00000324856.7:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000324856	NM_006015.4	437	Cgg/Tgg																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363349	40363349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	92	533	0	ENST00000397332.2:c.880G>A	p.Ala294Thr	p.A294T	ENST00000397332	NM_001033082.2	294	Gct/Act																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439854	51439854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	87	400	0	ENST00000262662.1:c.419C>T	p.Ala140Val	p.A140V	ENST00000262662		140	gCc/gTc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430589	78430589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	64	359	0	ENST00000370768.2:c.701C>T	p.Pro234Leu	p.P234L	ENST00000370768	NM_003902.3	234	cCt/cTt																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166617	118166617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	42	285	0	ENST00000369448.3:c.1127C>T	p.Pro376Leu	p.P376L	ENST00000369448	NM_017709.3	376	cCt/cTt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649664	206649664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	106	608	0	ENST00000367120.3:c.499G>A	p.Asp167Asn	p.D167N	ENST00000367120	NM_014002.3	167	Gat/Aat																																																																														
PARP1	142	MSKCC	GRCh37	1	226570788	226570788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	101	494	0	ENST00000366794.5:c.1108C>T	p.Pro370Ser	p.P370S	ENST00000366794	NM_001618.3	370	Ccg/Tcg																																																																														
RET	5979	MSKCC	GRCh37	10	43604563	43604563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	60	705	1	ENST00000355710.3:c.1148G>A	p.Gly383Asp	p.G383D	ENST00000355710	NM_020975.4	383	gGc/gAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373158	118373158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	67	324	0	ENST00000534358.1:c.6551C>T	p.Pro2184Leu	p.P2184L	ENST00000534358	NM_005933.3	2184	cCt/cTt																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945093	31945093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	78	514	0	ENST00000340398.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000340398	NM_001013699.2	3	cGa/cAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	80	323	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244255	46244256	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	45	347	0	ENST00000334344.6:c.2349_2350delinsTT	p.Pro784Ser	p.P784S	ENST00000334344	NM_152641.2	783	atCCct/atTTct																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864571	57864571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	140	711	0	ENST00000228682.2:c.2048C>T	p.Ser683Phe	p.S683F	ENST00000228682	NM_005269.2	683	tCt/tTt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112578	115112578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	101	682	0	ENST00000257566.3:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000257566	NM_016569.3	388	Gag/Aag																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967585	26967585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	32	388	0	ENST00000381527.3:c.728C>T	p.Thr243Ile	p.T243I	ENST00000381527	NM_001260.1	243	aCt/aTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906829	32906829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	55	406	0	ENST00000380152.3:c.1214G>A	p.Gly405Glu	p.G405E	ENST00000380152		405	gGa/gAa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134315	41134315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	41	476	0	ENST00000379561.5:c.1313C>T	p.Pro438Leu	p.P438L	ENST00000379561	NM_002015.3	438	cCt/cTt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435592	110435592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	73	489	0	ENST00000375856.3:c.2809C>T	p.Pro937Ser	p.P937S	ENST00000375856	NM_003749.2	937	Ccc/Tcc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100221	30100221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	40	286	0	ENST00000331968.5:c.1399C>T	p.Pro467Ser	p.P467S	ENST00000331968	NM_002742.2	467	Cct/Tct																																																																														
SLX4	84464	MSKCC	GRCh37	16	3645668	3645668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	144	778	0	ENST00000294008.3:c.1951C>T	p.Pro651Ser	p.P651S	ENST00000294008	NM_032444.2	651	Cct/Tct																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900720	3900720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	117	654	1	ENST00000262367.5:c.376G>A	p.Gly126Arg	p.G126R	ENST00000262367	NM_004380.2	126	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	72	577	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934874		P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	104	815	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16052783	16052783	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	18	279	0	ENST00000268712.3:c.891T>G	p.Asn297Lys	p.N297K	ENST00000268712	NM_006311.3	297	aaT/aaG																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682521	37682521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	64	416	0	ENST00000447079.4:c.3712C>T	p.Pro1238Ser	p.P1238S	ENST00000447079	NM_015083.1	1238	Cca/Tca																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226409	2226409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	154	840	0	ENST00000398665.3:c.3889C>A	p.Pro1297Thr	p.P1297T	ENST00000398665	NM_032482.2	1297	Ccc/Acc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17940991	17940991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	180	870	0	ENST00000458235.1:c.3133C>T	p.Pro1045Ser	p.P1045S	ENST00000458235	NM_000215.3	1045	Ccc/Tcc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965761	25965761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	106	590	0	ENST00000435504.4:c.3445C>T	p.Arg1149Cys	p.R1149C	ENST00000435504		1149	Cgt/Tgt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422431	225422431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	29	414	0	ENST00000264414.4:c.209G>C	p.Gly70Ala	p.G70A	ENST00000264414	NM_003590.4	70	gGa/gCa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546608	9546608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	81	425	0	ENST00000353224.5:c.1414G>A	p.Gly472Arg	p.G472R	ENST00000353224	NM_177990.2	472	Ggg/Agg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023874	31023874	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	116	606	0	ENST00000375687.4:c.3359A>G	p.Lys1120Arg	p.K1120R	ENST00000375687	NM_015338.5	1120	aAg/aGg																																																																														
SRC	6714	MSKCC	GRCh37	20	36012660	36012660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	65	240	0	ENST00000358208.4:c.104C>T	p.Ser35Leu	p.S35L	ENST00000358208		35	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713469	40713469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	104	580	0	ENST00000373198.4:c.4046G>A	p.Arg1349His	p.R1349H	ENST00000373198	NM_133170.3	1349	cGt/cAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757461	40757461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	78	521	2	ENST00000373198.4:c.2837C>T	p.Ser946Phe	p.S946F	ENST00000373198	NM_133170.3	946	tCc/tTc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36421162	36421162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	41	348	0	ENST00000300305.3:c.35C>T	p.Ser12Leu	p.S12L	ENST00000300305		12	tCg/tTg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866441	42866441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	148	697	0	ENST00000398585.3:c.191C>T	p.Pro64Leu	p.P64L	ENST00000398585	NM_001135099.1	64	cCc/cTc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026132	71026132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	68	419	1	ENST00000318789.4:c.1490G>A	p.Arg497Gln	p.R497Q	ENST00000318789	NM_032682.5	497	cGa/cAa																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73108244	73108244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	39	107	0	ENST00000356692.5:c.344A>G	p.Tyr115Cys	p.Y115C	ENST00000356692		115	tAt/tGt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390207	89390207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	55	288	0	ENST00000336596.2:c.956C>T	p.Ser319Phe	p.S319F	ENST00000336596	NM_005233.5	319	tCc/tTc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138402533	138402533	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	36	253	0	ENST00000289153.2:c.2412T>A	p.Phe804Leu	p.F804L	ENST00000289153	NM_006219.2	804	ttT/ttA																																																																														
ATR	545	MSKCC	GRCh37	3	142176561	142176561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	36	308	0	ENST00000350721.4:c.7540C>T	p.Arg2514Cys	p.R2514C	ENST00000350721	NM_001184.3	2514	Cgc/Tgc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750440	41750440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	86	503	0	ENST00000226382.2:c.188G>A	p.Gly63Glu	p.G63E	ENST00000226382	NM_003924.3	63	gGa/gAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593591	55593591	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	372	336	0	ENST00000288135.5:c.1657T>A	p.Tyr553Asn	p.Y553N	ENST00000288135	NM_000222.2	553	Tat/Aat																																																																														
KIT	3815	MSKCC	GRCh37	4	55599339	55599339	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	403	315	0	ENST00000288135.5:c.2465A>T	p.Asn822Ile	p.N822I	ENST00000288135	NM_000222.2	822	aAt/aTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187527246	187527246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	72	467	0	ENST00000441802.2:c.10328G>A	p.Gly3443Glu	p.G3443E	ENST00000441802	NM_005245.3	3443	gGa/gAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539888	187539888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	49	399	0	ENST00000441802.2:c.7852G>T	p.Val2618Phe	p.V2618F	ENST00000441802	NM_005245.3	2618	Gtt/Ttt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629231	187629231	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	102	444	0	ENST00000441802.2:c.1751T>G	p.Val584Gly	p.V584G	ENST00000441802	NM_005245.3	584	gTg/gGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	43	366	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876362	35876362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	58	557	0	ENST00000303115.3:c.1154C>T	p.Ser385Phe	p.S385F	ENST00000303115	NM_002185.3	385	tCc/tTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524603	176524603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	63	797	0	ENST00000292408.4:c.2335G>A	p.Asp779Asn	p.D779N	ENST00000292408	NM_213647.1	779	Gat/Aat																																																																														
E2F3	1871	MSKCC	GRCh37	6	20483130	20483131	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	63	291	0	ENST00000346618.3:c.863_864delinsTT	p.Thr288Ile	p.T288I	ENST00000346618	NM_001949.4	288	aCC/aTT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188306	32188306	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	126	794	1	ENST00000375023.3:c.1035T>A	p.Ser345Arg	p.S345R	ENST00000375023	NM_004557.3	345	agT/agA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956529	93956529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	33	288	0	ENST00000369303.4:c.2707C>T	p.Pro903Ser	p.P903S	ENST00000369303	NM_004440.3	903	Ccc/Tcc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553295	106553295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	88	589	0	ENST00000369096.4:c.1260G>A	p.Met420Ile	p.M420I	ENST00000369096	NM_001198.3	420	atG/atA																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005543	150005543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	64	347	1	ENST00000253339.5:c.682C>T	p.Pro228Ser	p.P228S	ENST00000253339		228	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	68930094	68930098	+	missense_variant	Missense_Mutation	ONP	GAATG	GAATG	AAATA			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	33	331	0	ENST00000288368.4:c.155_159delinsAAATA	p.Arg52_Met53delinsLysIle	p.R52_M53delinsKI	ENST00000288368	NM_024870.2	52	aGAATG/aAAATA																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126331	5126334	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	ONP	AGGA	AGGA	CGGG			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	17	216	0	ENST00000381652.3:c.3178-2_3179delinsCGGG		p.X1060_splice	ENST00000381652	NM_004972.3	1060																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400999	139400999	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	104	729	0	ENST00000277541.6:c.3994T>C	p.Phe1332Leu	p.F1332L	ENST00000277541	NM_017617.3	1332	Ttc/Ctc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139811012	139811012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	111	603	0	ENST00000247668.2:c.623C>T	p.Thr208Ile	p.T208I	ENST00000247668	NM_021138.3	208	aCt/aTt																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314906	1314906	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	62	335	2				ENST00000381566																																																																																	
AMER1	139285	MSKCC	GRCh37	X	63411231	63411231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	153	347	0	ENST00000330258.3:c.1936C>T	p.Arg646Trp	p.R646W	ENST00000330258	NM_152424.3	646	Cgg/Tgg																																																																														
AR	367	MSKCC	GRCh37	X	66937340	66937340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	90	267	0	ENST00000374690.3:c.2194G>A	p.Asp732Asn	p.D732N	ENST00000374690	NM_000044.3	732	Gac/Aac																																																																														
FAM58A	0	MSKCC	GRCh37	X	152861594	152861597	+	frameshift_variant	Frame_Shift_Del	DEL	TAAA	TAAA	-			P-0050421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	140	281	0	ENST00000406277.2:c.155_158del	p.Ile52ThrfsTer17	p.I52Tfs*17	ENST00000406277	NM_152274.4	52	aTTTAc/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	15	711	0	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929412	44929415	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0050442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	98	363	0	ENST00000377967.4:c.2515_2518del	p.Asn839ValfsTer27	p.N839Vfs*27	ENST00000377967	NM_021140.2	838	ACAAac/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	107	390	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	120	383	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	213	479	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	92	326	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249517	153249517	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	102	439	0	ENST00000281708.4:c.1261A>G	p.Thr421Ala	p.T421A	ENST00000281708	NM_033632.3	421	Aca/Gca																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120662	94120662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	73	401	0	ENST00000369303.4:c.389C>A	p.Thr130Lys	p.T130K	ENST00000369303	NM_004440.3	130	aCa/aAa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542569	141542569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	108	498	0	ENST00000220592.5:c.2417C>T	p.Ala806Val	p.A806V	ENST00000220592	NM_012154.3	806	gCt/gTt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98215779	98215779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	172	404	0	ENST00000331920.6:c.3430G>C	p.Glu1144Gln	p.E1144Q	ENST00000331920	NM_000264.3	1144	Gag/Cag																																																																														
TP63	8626	MSKCC	GRCh37	3	189590736	189590736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	99	472	0	ENST00000264731.3:c.1301C>T	p.Thr434Met	p.T434M	ENST00000264731	NM_003722.4	434	aCg/aTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493694	56493694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	38	402	0	ENST00000267101.3:c.3010G>C	p.Glu1004Gln	p.E1004Q	ENST00000267101	NM_001982.3	1004	Gag/Cag																																																																														
EP300	2033	MSKCC	GRCh37	22	41568590	41568590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	145	437	0	ENST00000263253.7:c.4540G>C	p.Glu1514Gln	p.E1514Q	ENST00000263253	NM_001429.3	1514	Gaa/Caa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	18	245	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	66	332	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	124	513	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	23	397	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	105	441	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	72	210	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371684	55371684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	65	487	0	ENST00000297316.4:c.374G>A	p.Arg125His	p.R125H	ENST00000297316	NM_022454.3	125	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692910	89692910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	57	430	0	ENST00000371953.3:c.394G>A	p.Gly132Ser	p.G132S	ENST00000371953	NM_000314.4	132	Ggt/Agt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910870	114910870	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	79	362	0	ENST00000543371.1:c.989C>G	p.Ser330Ter	p.S330*	ENST00000543371	NM_001198531.1	330	tCa/tGa																																																																														
ATR	545	MSKCC	GRCh37	3	142218477	142218477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	82	327	0	ENST00000350721.4:c.5372del	p.Leu1791TrpfsTer33	p.L1791Wfs*33	ENST00000350721	NM_001184.3	1791	tTg/tg																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165912	118165912	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	76	356	0	ENST00000369448.3:c.422A>C	p.Lys141Thr	p.K141T	ENST00000369448	NM_017709.3	141	aAg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	100	554	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39278343	39278343	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	136	479	0	ENST00000402219.2:c.806T>A	p.Met269Lys	p.M269K	ENST00000402219	NM_005633.3	269	aTg/aAg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262217	46262240	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTCCTTTTTTTGTTTAATAGG	TTTTTCCTTTTTTTGTTTAATAGG	AAAGGAAAA			P-0050465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	47	280	2	ENST00000371998.3:c.824-23_824delinsAAAGGAAAA		p.X275_splice	ENST00000371998		275																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0050465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	64	431	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
SMO	6608	MSKCC	GRCh37	7	128848611	128848611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	115	526	0	ENST00000249373.3:c.1276C>G	p.Leu426Val	p.L426V	ENST00000249373	NM_005631.4	426	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0050466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	185	439	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NF1	4763	MSKCC	GRCh37	17	29509579	29509579	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	44	405	0	ENST00000358273.4:c.784C>G	p.Arg262Gly	p.R262G	ENST00000358273	NM_001042492.2	262	Cgt/Ggt																																																																														
NF2	4771	MSKCC	GRCh37	22	30051665	30051665	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0050466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	136	243	0	ENST00000338641.4:c.599+1del		p.R200fs	ENST00000338641	NM_000268.3	200	aGg/ag																																																																														
ATRX	546	MSKCC	GRCh37	X	76874286	76874289	+	frameshift_variant	Frame_Shift_Del	DEL	AGCT	AGCT	-			P-0050466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	42	396	0	ENST00000373344.5:c.5433_5436del	p.Ala1812AspfsTer11	p.A1812Dfs*11	ENST00000373344	NM_000489.3	1811	ttAGCT/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0050469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	313	384	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579469	7579470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0050469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	224	596	0	ENST00000269305.4:c.216_217dup	p.Val73AlafsTer51	p.V73Afs*51	ENST00000269305	NM_001126112.2	73	gtg/gCGtg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098917	178098917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	174	344	0	ENST00000397062.3:c.128G>T	p.Arg43Leu	p.R43L	ENST00000397062	NM_006164.4	43	cGg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	189	355	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987148	36987148	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0050470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	117	497	0	ENST00000354822.5:c.541A>T	p.Lys181Ter	p.K181*	ENST00000354822	NM_001079668.2	181	Aag/Tag																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987220	36987220	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	89	446	1	ENST00000354822.5:c.469del	p.Arg157AlafsTer9	p.R157Afs*9	ENST00000354822	NM_001079668.2	157	Cgc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	96	334	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48947540	48947540	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	115	353	0	ENST00000267163.4:c.1128-1G>A		p.X376_splice	ENST00000267163	NM_000321.2	376																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943743	71943743	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	174	670	0	ENST00000298229.2:c.1786T>A	p.Ser596Thr	p.S596T	ENST00000298229	NM_001567.3	596	Tct/Act																																																																														
MGA	23269	MSKCC	GRCh37	15	41961651	41961651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	94	371	0	ENST00000219905.7:c.559G>C	p.Asp187His	p.D187H	ENST00000219905	NM_001164273.1	187	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579182	7579348	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAG	AAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAG	-			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	42	108	1	ENST00000269305.4:c.339_375+130del		p.X113_splice	ENST00000269305	NM_001126112.2	113																																																																															
TP53	7157	MSKCC	GRCh37	17	7579185	7579351	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAG	CTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAG	-			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	22	126	0	ENST00000269305.4:c.336_375+127del		p.X112_splice	ENST00000269305	NM_001126112.2	112																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15311616	15311625	+	frameshift_variant	Frame_Shift_Del	DEL	GCTAGCAGCA	GCTAGCAGCA	-			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	22	142	0	ENST00000263388.2:c.92_101del	p.Leu31ArgfsTer202	p.L31Rfs*202	ENST00000263388	NM_000435.2	31	cTGCTGCTAGCg/cg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096076	178096076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	46	400	0	ENST00000397062.3:c.1255G>C	p.Asp419His	p.D419H	ENST00000397062	NM_006164.4	419	Gat/Cat																																																																														
CD274	29126	MSKCC	GRCh37	9	5463032	5463032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	60	275	0	ENST00000381577.3:c.593G>C	p.Arg198Thr	p.R198T	ENST00000381577	NM_014143.3	198	aGa/aCa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0050526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	15	337	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101612	27101612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	385	757	0	ENST00000324856.7:c.4899del	p.Met1634Ter	p.M1634*	ENST00000324856	NM_006015.4	1632	Ccc/cc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371849	55371850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	19	102	0	ENST00000297316.4:c.541dup	p.Leu181ProfsTer184	p.L181Pfs*184	ENST00000297316	NM_022454.3	180	ggc/ggCc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942647	71942647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	146	546	0	ENST00000298229.2:c.1603G>A	p.Ala535Thr	p.A535T	ENST00000298229	NM_001567.3	535	Gcc/Acc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720720	89720720	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	93	116	0	ENST00000371953.3:c.871del	p.Glu291LysfsTer16	p.E291Kfs*16	ENST00000371953	NM_000314.4	291	Gaa/aa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944789	71944789	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	140	570	0	ENST00000298229.2:c.2212+1G>T		p.X738_splice	ENST00000298229	NM_001567.3	738																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830604	72830604	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	143	617	0	ENST00000268489.5:c.5977del	p.Ser1993ProfsTer4	p.S1993Pfs*4	ENST00000268489	NM_006885.3	1993	Tcc/cc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591056	67591076	+	inframe_deletion	In_Frame_Del	DEL	AGAAGCAGGCAGCTGAGTATC	AGAAGCAGGCAGCTGAGTATC	-			P-0050526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	59	255	0	ENST00000274335.5:c.1649_1669del	p.Lys550_Tyr556del	p.K550_Y556del	ENST00000274335		550	aAGAAGCAGGCAGCTGAGTATCga/aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	91	197	0				ENST00000310581	NM_198253.2																																																																																
AKT2	208	MSKCC	GRCh37	19	40742257	40742257	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	104	609	0	ENST00000392038.2:c.867C>G	p.Ile289Met	p.I289M	ENST00000392038	NM_001626.4	289	atC/atG																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	4621	556	1	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29527461	29527461	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	35	326	0	ENST00000358273.4:c.910C>T	p.Arg304Ter	p.R304*	ENST00000358273	NM_001042492.2	304	Cga/Tga																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	236	321	0	ENST00000335508.6:c.2704G>C	p.Glu902Gln	p.E902Q	ENST00000335508	NM_012433.2	902	Gaa/Caa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651893	36651894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	104	603	0	ENST00000244741.5:c.19dup	p.Asp7GlyfsTer29	p.D7Gfs*29	ENST00000244741	NM_000389.4	5	-/G																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107135	27107135	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	256	504	0	ENST00000324856.7:c.6746C>G	p.Ser2249Ter	p.S2249*	ENST00000324856	NM_006015.4	2249	tCa/tGa																																																																														
TET2	54790	MSKCC	GRCh37	4	106193871	106193871	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	164	297	0	ENST00000380013.4:c.4333C>T	p.Gln1445Ter	p.Q1445*	ENST00000380013	NM_001127208.2	1445	Cag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864693	68864693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	159	336	0	ENST00000288368.4:c.64C>T	p.Arg22Cys	p.R22C	ENST00000288368	NM_024870.2	22	Cgc/Tgc																																																																														
PGR	5241	MSKCC	GRCh37	11	100999078	100999078	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200987911		P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	202	507	0	ENST00000325455.5:c.724C>T	p.Arg242Trp	p.R242W	ENST00000325455	NM_001202474.3	242	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16265268	16265268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	131	521	0	ENST00000375759.3:c.10760A>G	p.Asp3587Gly	p.D3587G	ENST00000375759	NM_015001.2	3587	gAt/gGt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429833	78429833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	52	297	0	ENST00000370768.2:c.955C>T	p.Pro319Ser	p.P319S	ENST00000370768	NM_003902.3	319	Ccc/Tcc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104356901	104356901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	102	432	0	ENST00000369902.3:c.761G>A	p.Arg254Lys	p.R254K	ENST00000369902	NM_016169.3	254	aGa/aAa																																																																														
SUFU	51684	MSKCC	GRCh37	10	104356924	104356924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	106	477	0	ENST00000369902.3:c.784G>C	p.Asp262His	p.D262H	ENST00000369902	NM_016169.3	262	Gat/Cat																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948404	71948404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	308	713	1	ENST00000298229.2:c.3116C>T	p.Ser1039Phe	p.S1039F	ENST00000298229	NM_001567.3	1039	tCt/tTt																																																																														
PGR	5241	MSKCC	GRCh37	11	100996738	100996738	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	76	364	0	ENST00000325455.5:c.1789G>T	p.Gly597Trp	p.G597W	ENST00000325455	NM_001202474.3	597	Ggg/Tgg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343984	118343984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	139	322	0	ENST00000534358.1:c.2110C>T	p.Pro704Ser	p.P704S	ENST00000534358	NM_005933.3	704	Cca/Tca																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861900	57861900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	107	637	0	ENST00000228682.2:c.1201G>A	p.Gly401Ser	p.G401S	ENST00000228682	NM_005269.2	401	Ggc/Agc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929375	32929375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	81	368	0	ENST00000380152.3:c.7385C>G	p.Ser2462Cys	p.S2462C	ENST00000380152		2462	tCc/tGc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78914341	78914341	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	313	606	0	ENST00000306801.3:c.2965G>C	p.Glu989Gln	p.E989Q	ENST00000306801	NM_020761.2	989	Gag/Cag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222067	2222067	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	132	791	0	ENST00000398665.3:c.2899G>T	p.Glu967Ter	p.E967*	ENST00000398665	NM_032482.2	967	Gag/Tag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18963845	18963845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	165	449	0	ENST00000262803.5:c.1022G>C	p.Arg341Thr	p.R341T	ENST00000262803	NM_002911.3	341	aGa/aCa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198264978	198264978	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	159	304	0	ENST00000335508.6:c.2899G>C	p.Glu967Gln	p.E967Q	ENST00000335508	NM_012433.2	967	Gag/Cag																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29099543	29099543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	49	308	0	ENST00000328354.6:c.858C>G	p.Ile286Met	p.I286M	ENST00000328354	NM_007194.3	286	atC/atG																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665280	138665280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	253	589	0	ENST00000330315.3:c.285G>T	p.Lys95Asn	p.K95N	ENST00000330315	NM_023067.3	95	aaG/aaT																																																																														
ATR	545	MSKCC	GRCh37	3	142277499	142277499	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	146	285	0	ENST00000350721.4:c.1852C>G	p.Leu618Val	p.L618V	ENST00000350721	NM_001184.3	618	Cta/Gta																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169977839	169977839	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	167	360	0	ENST00000295797.4:c.306G>C	p.Leu102Phe	p.L102F	ENST00000295797	NM_002740.5	102	ttG/ttC																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670341	30670341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	163	433	0	ENST00000376406.3:c.6091C>T	p.Arg2031Trp	p.R2031W	ENST00000376406	NM_014641.2	2031	Cgg/Tgg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70967563	70967563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	178	497	0	ENST00000276594.2:c.1460G>T	p.Arg487Ile	p.R487I	ENST00000276594	NM_024504.3	487	aGa/aTa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70967613	70967613	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	115	399	0	ENST00000276594.2:c.1410C>G	p.Phe470Leu	p.F470L	ENST00000276594	NM_024504.3	470	ttC/ttG																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328345	137328346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0050536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	139	673	0	ENST00000481739.1:c.1277_1278dup	p.Ser427AlafsTer36	p.S427Afs*36	ENST00000481739	NM_002957.4	425	ctg/ctGCg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117378	115117379	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TA	TA	-			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	364	342	0	ENST00000257566.3:c.795_796del	p.Tyr265Ter	p.Y265*	ENST00000257566	NM_016569.3	265	taTAgt/tagt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060696	38060697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGCC			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	144	929	1	ENST00000250448.2:c.1288_1292dup	p.Thr432AlafsTer10	p.T432Afs*10	ENST00000250448	NM_004496.3	431	tct/tcGGCTCt																																																																														
CDH1	999	MSKCC	GRCh37	16	68842374	68842375	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	103	499	0	ENST00000261769.5:c.438_439del	p.Pro147TrpfsTer20	p.P147Wfs*20	ENST00000261769	NM_004360.3	145	tcCTct/tcct																																																																														
CDK12	51755	MSKCC	GRCh37	17	37646831	37646831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	152	365	0	ENST00000447079.4:c.1956del	p.Lys652AsnfsTer3	p.K652Nfs*3	ENST00000447079	NM_015083.1	651	tcA/tc																																																																														
APC	324	MSKCC	GRCh37	5	112173386	112173386	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	77	324	0	ENST00000257430.4:c.2095T>A	p.Trp699Arg	p.W699R	ENST00000257430	NM_000038.5	699	Tgg/Agg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502735	149502735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	359	631	0	ENST00000261799.4:c.2053C>T	p.Arg685Cys	p.R685C	ENST00000261799	NM_002609.3	685	Cgc/Tgc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730114	41730114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	105	398	0	ENST00000242208.4:c.415G>A	p.Glu139Lys	p.E139K	ENST00000242208	NM_002192.2	139	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41569662	41569662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	82	284	0	ENST00000263253.7:c.4653G>T	p.Lys1551Asn	p.K1551N	ENST00000263253	NM_001429.3	1551	aaG/aaT																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495647	72495647	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0050552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	116	392	0	ENST00000477973.2:c.423G>C	p.Arg142Thr	p.R142T	ENST00000477973	NM_012234.5	142	aGa/aCa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061105	38061134	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCGGCTCTCAGGGCCGCCCTTGGCGCCG	TTGCGGCTCTCAGGGCCGCCCTTGGCGCCG	C			P-0050552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	24	122	0	ENST00000250448.2:c.855_884delinsG	p.Ser285ArgfsTer8	p.S285Rfs*8	ENST00000250448	NM_004496.3	285	agCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAg/agGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	77	518	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	66	738	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112175574	112175575	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAA			P-0050553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	61	531	0	ENST00000257430.4:c.4286_4289dup	p.Met1431AsnfsTer8	p.M1431Nfs*8	ENST00000257430	NM_000038.5	1428	gga/ggACAAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058535	69058535	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	87	715	0	ENST00000288368.4:c.4179A>T	p.Gln1393His	p.Q1393H	ENST00000288368	NM_024870.2	1393	caA/caT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	521	276	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0050554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	478	839	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044943	47044943	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	356	390	0	ENST00000329236.7:c.2035C>T	p.Gln679Ter	p.Q679*	ENST00000329236	NM_001204466.1	679	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	49027248	49027248	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0050554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	157	465	2	ENST00000267163.4:c.1814+1G>A		p.X605_splice	ENST00000267163	NM_000321.2	605																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032257	26032257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	88	388	0	ENST00000244661.2:c.32C>T	p.Ser11Phe	p.S11F	ENST00000244661	NM_003537.3	11	tCc/tTc																																																																														
TET1	80312	MSKCC	GRCh37	10	70404710	70404710	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	37	600	0	ENST00000373644.4:c.2224G>C	p.Asp742His	p.D742H	ENST00000373644	NM_030625.2	742	Gac/Cac																																																																														
TET2	54790	MSKCC	GRCh37	4	106157872	106157872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	22	433	0	ENST00000380013.4:c.2773G>A	p.Ala925Thr	p.A925T	ENST00000380013	NM_001127208.2	925	Gca/Aca																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514364	149514364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	244	653	0	ENST00000261799.4:c.580A>G	p.Ile194Val	p.I194V	ENST00000261799	NM_002609.3	194	Att/Gtt																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158443	26158443	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	135	775	0	ENST00000289316.2:c.46A>C	p.Lys16Gln	p.K16Q	ENST00000289316	NM_138720.2	16	Aag/Cag																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200010	138200010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	117	581	0	ENST00000237289.4:c.1428G>A	p.Met476Ile	p.M476I	ENST00000237289	NM_001270507.1	476	atG/atA																																																																														
TEK	7010	MSKCC	GRCh37	9	27157882	27157919	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGATGCTGAAACATCTCTCACCTGCATTGCCTCTGG	TCTGATGCTGAAACATCTCTCACCTGCATTGCCTCTGG	-			P-0050554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	86	584	0	ENST00000380036.4:c.106_143del	p.Ser36ValfsTer5	p.S36Vfs*5	ENST00000380036	NM_000459.3	36	TCTGATGCTGAAACATCTCTCACCTGCATTGCCTCTGGg/g																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0050555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	38	487	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	16	339	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032566	47032566	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	39	514	0	ENST00000329236.7:c.241G>T	p.Glu81Ter	p.E81*	ENST00000329236	NM_001204466.1	81	Gag/Tag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658295	18658295	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	99	503	0	ENST00000266497.5:c.3100C>G	p.Arg1034Gly	p.R1034G	ENST00000266497		1034	Cgt/Ggt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443695	49443695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	15	673	0	ENST00000301067.7:c.3676C>A	p.Leu1226Ile	p.L1226I	ENST00000301067	NM_003482.3	1226	Ctc/Atc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061137	38061186	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGC	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGC	-			P-0050556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	188	100	0	ENST00000250448.2:c.803_852del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGC/t																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980488	70980488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	62	626	1	ENST00000276594.2:c.889G>A	p.Gly297Arg	p.G297R	ENST00000276594	NM_024504.3	297	Gga/Aga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619137	37619137	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CAGGC			P-0050556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	202	578	0	ENST00000447079.4:c.813delinsCAGGC	p.Arg271SerfsTer28	p.R271Sfs*28	ENST00000447079	NM_015083.1	271	agA/agCAGGC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	142	653	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	51	391	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793008	33793010	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0050557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	13	66	0	ENST00000498907.2:c.311_313del	p.Gly104del	p.G104del	ENST00000498907	NM_004364.3	104	gGCGac/gac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589579	67589593	+	inframe_deletion	In_Frame_Del	DEL	AAATTACATGAATAT	AAATTACATGAATAT	-			P-0050557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	85	304	0	ENST00000274335.5:c.1344_1358del	p.Lys448_Tyr452del	p.K448_Y452del	ENST00000274335		448	AAATTACATGAATAT/-																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047151	77047151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	95	550	0	ENST00000356341.3:c.1393C>T	p.Leu465Phe	p.L465F	ENST00000356341	NM_002576.4	465	Ctc/Ttc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39251221	39251221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	153	589	1	ENST00000402219.2:c.1132A>T	p.Thr378Ser	p.T378S	ENST00000402219	NM_005633.3	378	Aca/Tca																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931904	39931904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	118	724	0	ENST00000378444.4:c.2695C>T	p.Pro899Ser	p.P899S	ENST00000378444	NM_001123385.1	899	Cca/Tca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0050558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1287	571	519	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	656	712	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																														
RET	5979	MSKCC	GRCh37	10	43613868	43613868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	66	746	1	ENST00000355710.3:c.2332G>A	p.Val778Ile	p.V778I	ENST00000355710	NM_020975.4	778	Gtc/Atc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121340	29121340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	275	724	0	ENST00000328354.6:c.335A>G	p.Asn112Ser	p.N112S	ENST00000328354	NM_007194.3	112	aAc/aGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094325	27094325	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	47	709	0	ENST00000324856.7:c.3033G>C	p.Leu1011Phe	p.L1011F	ENST00000324856	NM_006015.4	1011	ttG/ttC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105761	27105761	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	60	618	0	ENST00000324856.7:c.5372C>A	p.Ser1791Ter	p.S1791*	ENST00000324856	NM_006015.4	1791	tCa/tAa																																																																														
RET	5979	MSKCC	GRCh37	10	43623709	43623709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	111	687	0	ENST00000355710.3:c.3337G>C	p.Asp1113His	p.D1113H	ENST00000355710	NM_020975.4	1113	Gat/Cat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720653	89720654	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	32	333	0	ENST00000371953.3:c.808dup	p.Met270AsnfsTer28	p.M270Nfs*28	ENST00000371953	NM_000314.4	268	-/A																																																																														
BIRC3	330	MSKCC	GRCh37	11	102198800	102198800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	35	490	0	ENST00000263464.3:c.971G>C	p.Arg324Thr	p.R324T	ENST00000263464	NM_001165.4	324	aGa/aCa																																																																														
RB1	5925	MSKCC	GRCh37	13	49050564	49050895	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGAGTAGGCAGTTGCTGGAGGAAGAATGTGAGCTGCATGGGAAAAGACAGGAGGATTTACAAAGAGTGGGTGTTTAATTGGGGATGGAATTAGGTAGTTATTCTGATTTTTAGATTTTTCATATCTTTTATTTGGTCCAATGAAGCAGAAAATTTAAATGAAGTTATTACCTTTGCCTGATTTTTGACACACCTCAAACTATAACTTGAGGTTGCTAACTATGAAACACTGGCATTTAATGATTTAAAGTAAAGAATTCTGTAATTTGTAGACTTCTGAGAAGTTCCAGAAAATAAATCAGATGGTATGTAACAGCGACCGTGTGCTCAA	GCAGAGTAGGCAGTTGCTGGAGGAAGAATGTGAGCTGCATGGGAAAAGACAGGAGGATTTACAAAGAGTGGGTGTTTAATTGGGGATGGAATTAGGTAGTTATTCTGATTTTTAGATTTTTCATATCTTTTATTTGGTCCAATGAAGCAGAAAATTTAAATGAAGTTATTACCTTTGCCTGATTTTTGACACACCTCAAACTATAACTTGAGGTTGCTAACTATGAAACACTGGCATTTAATGATTTAAAGTAAAGAATTCTGTAATTTGTAGACTTCTGAGAAGTTCCAGAAAATAAATCAGATGGTATGTAACAGCGACCGTGTGCTCAA	-			P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	25	18	0	ENST00000267163.4:c.2521-273_2579del		p.X841_splice	ENST00000267163	NM_000321.2	841																																																																															
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	103	915	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	53	895	2	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967196	25967196	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	60	611	0	ENST00000435504.4:c.2010G>C	p.Gln670His	p.Q670H	ENST00000435504		670	caG/caC																																																																														
CASP8	841	MSKCC	GRCh37	2	202141685	202141685	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	45	499	0	ENST00000358485.4:c.973G>C	p.Asp325His	p.D325H	ENST00000358485	NM_001080125.1	325	Gat/Cat																																																																														
EP300	2033	MSKCC	GRCh37	22	41513379	41513379	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	90	830	0	ENST00000263253.7:c.283A>G	p.Met95Val	p.M95V	ENST00000263253	NM_001429.3	95	Atg/Gtg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542656	187542656	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	43	738	0	ENST00000441802.2:c.5084C>G	p.Ser1695Ter	p.S1695*	ENST00000441802	NM_005245.3	1695	tCa/tGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	103	302	0				ENST00000310581	NM_198253.2																																																																																
RASA1	5921	MSKCC	GRCh37	5	86670698	86670698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	26	418	0	ENST00000274376.6:c.1976G>A	p.Ser659Asn	p.S659N	ENST00000274376	NM_002890.2	659	aGt/aAt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038877	47038877	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	128	459	0	ENST00000329236.7:c.653C>G	p.Ser218Ter	p.S218*	ENST00000329236	NM_001204466.1	218	tCa/tGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013150-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	264	365	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013150-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	798	766	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132542	11132542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013150-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	408	708	0	ENST00000344626.4:c.2758G>A	p.Glu920Lys	p.E920K	ENST00000344626	NM_003072.3	920	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820697	3820703	+	frameshift_variant	Frame_Shift_Del	DEL	GACTGTA	GACTGTA	-			P-0013150-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	419	815	0	ENST00000262367.5:c.2748_2754del	p.Thr917ArgfsTer8	p.T917Rfs*8	ENST00000262367	NM_004380.2	916	ccTACAGTC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099864	27099864	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013150-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	382	554	0	ENST00000324856.7:c.3743C>A	p.Ser1248Ter	p.S1248*	ENST00000324856	NM_006015.4	1248	tCa/tAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44833925	44833925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013150-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			68	292	246	0	ENST00000377967.4:c.349C>G	p.Gln117Glu	p.Q117E	ENST00000377967	NM_021140.2	117	Cag/Gag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0015363-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	660	677	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015363-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	560	738	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259554	55259554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015363-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	645	688	0	ENST00000275493.2:c.2612C>G	p.Ala871Gly	p.A871G	ENST00000275493	NM_005228.3	871	gCa/gGa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931791	68931791	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015363-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	279	401	0	ENST00000288368.4:c.221T>A	p.Phe74Tyr	p.F74Y	ENST00000288368	NM_024870.2	74	tTc/tAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	96	322	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175945	176175945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	51	149	1	ENST00000367669.3:c.170G>A	p.Gly57Asp	p.G57D	ENST00000367669	NM_022457.5	57	gGc/gAc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64574565	64574565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	59	666	0	ENST00000337652.1:c.845C>T	p.Pro282Leu	p.P282L	ENST00000337652	NM_130803.2	282	cCc/cTc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180535	94180535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	45	372	0	ENST00000323929.3:c.1633C>T	p.Leu545Phe	p.L545F	ENST00000323929	NM_005591.3	545	Ctt/Ttt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348011	89348011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			551	74	767	0	ENST00000301030.4:c.4939C>T	p.Pro1647Ser	p.P1647S	ENST00000301030	NM_001256183.1	1647	Cct/Tct																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796963	78796963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	116	476	0	ENST00000306801.3:c.1076C>T	p.Ser359Leu	p.S359L	ENST00000306801	NM_020761.2	359	tCg/tTg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158636966	158636967	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	24	471	0	ENST00000263640.3:c.213_214delinsAT	p.Phe71_Gln72delinsLeuTer	p.F71_Q72delinsL*	ENST00000263640	NM_001105.4	71	ttCCag/ttATag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733280	40733280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	55	483	0	ENST00000373198.4:c.3526C>T	p.Arg1176Cys	p.R1176C	ENST00000373198	NM_133170.3	1176	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	10	238	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197387	26197387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	68	407	0	ENST00000356476.2:c.92C>T	p.Pro31Leu	p.P31L	ENST00000356476		31	cCa/cTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188355	32188355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	104	673	0	ENST00000375023.3:c.986G>A	p.Gly329Glu	p.G329E	ENST00000375023	NM_004557.3	329	gGg/gAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55229226	55229227	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	89	556	0	ENST00000275493.2:c.1533_1534delinsTT	p.Pro512Ser	p.P512S	ENST00000275493	NM_005228.3	511	tcCCcc/tcTTcc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740573	145740573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			789	123	808	0	ENST00000428558.2:c.1444C>T	p.Arg482Cys	p.R482C	ENST00000428558	NM_004260.3	482	Cgc/Tgc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126432	5126432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	28	259	0	ENST00000381652.3:c.3277G>A	p.Gly1093Arg	p.G1093R	ENST00000381652	NM_004972.3	1093	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0035511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	14	0	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	79	396	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	200	663	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345809	152345809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	55	411	0	ENST00000359321.1:c.761C>T	p.Ser254Leu	p.S254L	ENST00000359321	NM_005431.1	254	tCa/tTa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460351	149460351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	141	540	2	ENST00000286301.3:c.286G>A	p.Ala96Thr	p.A96T	ENST00000286301	NM_005211.3	96	Gcc/Acc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683357	88683357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	195	603	0	ENST00000372037.3:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000372037	NM_004329.2	494	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35875632	35875632	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	128	371	0	ENST00000303115.3:c.819G>A	p.Trp273Ter	p.W273*	ENST00000303115	NM_002185.3	273	tgG/tgA																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603007	48603007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	76	288	0	ENST00000342988.3:c.1309-1G>C		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	144	400	0	ENST00000371953.3:c.511C>A	p.Gln171Lys	p.Q171K	ENST00000371953	NM_000314.4	171	Cag/Aag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500432	99500432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	202	736	1	ENST00000268035.6:c.3865G>A	p.Glu1289Lys	p.E1289K	ENST00000268035	NM_000875.3	1289	Gag/Aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440934	56440935	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036748-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	240	655	0	ENST00000407977.2:c.402dup	p.Ser135GlnfsTer6	p.S135Qfs*6	ENST00000407977		134	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	74	518	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	25	265	0				ENST00000310581	NM_198253.2																																																																																
TET1	80312	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	37	411	0	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	49	519	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
PGR	5241	MSKCC	GRCh37	11	100933397	100933397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	354	363	0	ENST00000325455.5:c.1993G>A	p.Glu665Lys	p.E665K	ENST00000325455	NM_001202474.3	665	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974703	21974703	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	40	376	0	ENST00000304494.5:c.124A>C	p.Asn42His	p.N42H	ENST00000304494	NM_000077.4	42	Aat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974703	21974703	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	40	376	0	ENST00000304494.5:c.124A>C	p.Asn42His	p.N42H	ENST00000304494	NM_000077.4	42	Aat/Cat																																																																														
PGR	5241	MSKCC	GRCh37	11	100933436	100933436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	248	284	0	ENST00000325455.5:c.1954G>A	p.Asp652Asn	p.D652N	ENST00000325455	NM_001202474.3	652	Gat/Aat																																																																														
PGR	5241	MSKCC	GRCh37	11	100933280	100933280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	424	423	0	ENST00000325455.5:c.2110G>A	p.Asp704Asn	p.D704N	ENST00000325455	NM_001202474.3	704	Gac/Aac																																																																														
PGR	5241	MSKCC	GRCh37	11	100933301	100933301	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	418	435	0	ENST00000325455.5:c.2089G>C	p.Asp697His	p.D697H	ENST00000325455	NM_001202474.3	697	Gat/Cat																																																																														
PGR	5241	MSKCC	GRCh37	11	100933427	100933427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	264	300	0	ENST00000325455.5:c.1963G>A	p.Ala655Thr	p.A655T	ENST00000325455	NM_001202474.3	655	Gct/Act																																																																														
PGR	5241	MSKCC	GRCh37	11	100933453	100933453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	203	219	0	ENST00000325455.5:c.1937G>C	p.Arg646Thr	p.R646T	ENST00000325455	NM_001202474.3	646	aGa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	438	473	0	ENST00000269305.4:c.636delT	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023501	31023501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	412	338	0	ENST00000375687.4:c.2986G>T	p.Gly996Cys	p.G996C	ENST00000375687	NM_015338.5	996	Ggt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49449079	49449079	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	179	376	0	ENST00000301067.7:c.29A>T	p.Asp10Val	p.D10V	ENST00000301067	NM_003482.3	10	gAt/gTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914091	32914091	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	109	290	0	ENST00000380152.3:c.5599A>C	p.Thr1867Pro	p.T1867P	ENST00000380152		1867	Aca/Cca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212703	36212703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	234	460	0	ENST00000222270.7:c.2454G>A	p.Met818Ile	p.M818I	ENST00000222270	NM_014727.1	818	atG/atA																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794973	242794973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	238	794	1	ENST00000334409.5:c.236T>C	p.Leu79Pro	p.L79P	ENST00000334409	NM_005018.2	79	cTg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	22	610	0	ENST00000269305.4:c.713G>C	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	tGt/tCt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	67	705	0	ENST00000267101.3:c.273G>A	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atA																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787845	135787845	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0050438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	19	397	0	ENST00000298552.3:c.738-1G>A		p.X246_splice	ENST00000298552	NM_001162426.1	246																																																																															
TERT	7015	MSKCC	GRCh37	5	1295176	1295176	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0050438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	19	302	0				ENST00000310581	NM_198253.2																																																																																
HLA-B	3106	MSKCC	GRCh37	6	31324010	31324010	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	34	570	0	ENST00000412585.2:c.553G>T	p.Glu185Ter	p.E185*	ENST00000412585	NM_005514.6	185	Gag/Tag																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324096	31324096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	24	471	0	ENST00000412585.2:c.467C>T	p.Ser156Phe	p.S156F	ENST00000412585	NM_005514.6	156	tCc/tTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	24	1001	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0050440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	17	781	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913403		P-0050440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	14	541	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	203	532	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	101	343	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	75	541	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0050446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	84	517	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254787	16254787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	55	483	1	ENST00000375759.3:c.2052G>T	p.Arg684Ser	p.R684S	ENST00000375759	NM_015001.2	684	agG/agT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577106	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACAGGCACAAACAC			P-0050446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	55	530	0	ENST00000269305.4:c.818_832dup	p.Arg273_Cys277dup	p.R273_C277dup	ENST00000269305	NM_001126112.2	273	cct/cGTGTTTGTGCCTGTCct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	88	305	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	78	316	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793008	33793010	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0050448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	12	101	0	ENST00000498907.2:c.311_313del	p.Gly104del	p.G104del	ENST00000498907	NM_004364.3	104	gGCGac/gac																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160646	56160646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	93	338	0	ENST00000399503.3:c.920G>A	p.Arg307His	p.R307H	ENST00000399503	NM_005921.1	307	cGt/cAt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115277060	115277061	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0050448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	114	419	0	ENST00000438362.2:c.720+2dup		p.X240_splice	ENST00000438362	NM_001242891.1	240																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098943	178098975	+	inframe_deletion	In_Frame_Del	DEL	TCGACTTACTCCAAGATCTATATCTTGCCTCCA	TCGACTTACTCCAAGATCTATATCTTGCCTCCA	-			P-0050448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	66	294	0	ENST00000397062.3:c.70_102del	p.Trp24_Arg34del	p.W24_R34del	ENST00000397062	NM_006164.4	24	TGGAGGCAAGATATAGATCTTGGAGTAAGTCGA/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	22	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	36	605	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426708	47426708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	26	639	2	ENST00000377045.4:c.953C>T	p.Thr318Met	p.T318M	ENST00000377045	NM_001654.4	318	aCg/aTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043381	180043381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	22	514	2	ENST00000261937.6:c.3205G>A	p.Val1069Ile	p.V1069I	ENST00000261937	NM_182925.4	1069	Gtc/Atc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433354	138433354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	10	444	1	ENST00000289153.2:c.1258A>G	p.Ile420Val	p.I420V	ENST00000289153	NM_006219.2	420	Att/Gtt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971040	21971041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	31	467	0	ENST00000304494.5:c.317dup	p.Arg107AlafsTer13	p.R107Afs*13	ENST00000304494	NM_000077.4	106	gtg/gtTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971040	21971041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	31	467	0	ENST00000304494.5:c.317dup	p.Arg107AlafsTer13	p.R107Afs*13	ENST00000304494	NM_000077.4	106	gtg/gtTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971040	21971041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	31	467	0	ENST00000304494.5:c.317dup	p.Arg107AlafsTer13	p.R107Afs*13	ENST00000304494	NM_000077.4	106	gtg/gtTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29663821	29663823	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0050450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	69	483	0	ENST00000358273.4:c.6319_6321del	p.Val2107del	p.V2107del	ENST00000358273	NM_001042492.2	2106	GTT/-																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	32	389	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	32	311	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	42	437	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
NF2	4771	MSKCC	GRCh37	22	30051596	30051596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	50	342	0	ENST00000338641.4:c.530A>G	p.Tyr177Cys	p.Y177C	ENST00000338641	NM_000268.3	177	tAt/tGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922884	44922884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	34	223	0	ENST00000377967.4:c.1745del	p.Ser582Ter	p.S582*	ENST00000377967	NM_021140.2	582	tCa/ta																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861153	57861153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	159	462	0	ENST00000228682.2:c.950A>T	p.Asn317Ile	p.N317I	ENST00000228682	NM_005269.2	317	aAc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	401	427	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
NF1	4763	MSKCC	GRCh37	17	29684326	29684328	+	frameshift_variant	Frame_Shift_Del	DEL	CGA	CGA	GT			P-0050452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	106	413	1	ENST00000358273.4:c.7909_7911delinsGT	p.Arg2637ValfsTer7	p.R2637Vfs*7	ENST00000358273	NM_001042492.2	2637	CGA/GT																																																																														
STAT3	6774	MSKCC	GRCh37	17	40481781	40481781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	114	316	0	ENST00000264657.5:c.1123G>A	p.Val375Ile	p.V375I	ENST00000264657	NM_139276.2	375	Gtt/Att																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141463	11141463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	190	526	0	ENST00000344626.4:c.3440C>G	p.Ser1147Cys	p.S1147C	ENST00000344626	NM_003072.3	1147	tCt/tGt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152077	11152077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	181	457	0	ENST00000344626.4:c.4265C>G	p.Ser1422Cys	p.S1422C	ENST00000344626	NM_003072.3	1422	tCc/tGc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187384	38187384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	159	361	0	ENST00000317025.8:c.1093C>T	p.Arg365Cys	p.R365C	ENST00000317025	NM_023034.1	365	Cgt/Tgt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737428	145737428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	178	552	1	ENST00000428558.2:c.3259C>T	p.Pro1087Ser	p.P1087S	ENST00000428558	NM_004260.3	1087	Ccc/Tcc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044988	47044988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	217	554	0	ENST00000329236.7:c.2080G>C	p.Glu694Gln	p.E694Q	ENST00000329236	NM_001204466.1	694	Gag/Cag																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926888	112926888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	99	476	0	ENST00000351677.2:c.1508G>C	p.Gly503Ala	p.G503A	ENST00000351677	NM_002834.3	503	gGg/gCg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268177	153268177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	192	268	0	ENST00000281708.4:c.631G>T	p.Asp211Tyr	p.D211Y	ENST00000281708	NM_033632.3	211	Gac/Tac																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115284234	115284234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	219	467	0	ENST00000438362.2:c.52C>A	p.Pro18Thr	p.P18T	ENST00000438362	NM_001242891.1	18	Cct/Act																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281980	49281980	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	422	547	1	ENST00000282018.3:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000282018	NM_020377.2	343	Gaa/Taa																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129011	30129011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	38	558	0	ENST00000263025.4:c.755A>G	p.Asp252Gly	p.D252G	ENST00000263025	NM_002746.2	252	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578452	7578452	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	417	587	0	ENST00000269305.4:c.478del	p.Met160TrpfsTer10	p.M160Wfs*10	ENST00000269305	NM_001126112.2	160	Atg/tg																																																																														
CIC	23152	MSKCC	GRCh37	19	42795270	42795270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	203	549	0	ENST00000575354.2:c.2350G>T	p.Gly784Trp	p.G784W	ENST00000575354	NM_015125.3	784	Ggg/Tgg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430960	181430960	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	173	612	0	ENST00000325404.1:c.812G>C	p.Arg271Pro	p.R271P	ENST00000325404	NM_003106.3	271	cGg/cCg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56184086	56184086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	19	410	0	ENST00000399503.3:c.4291G>A	p.Asp1431Asn	p.D1431N	ENST00000399503	NM_005921.1	1431	Gat/Aat																																																																														
MYC	4609	MSKCC	GRCh37	8	128752612	128752650	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGGAGTGATTTCTATTTCCTTTCTTAAAGAGGAGGAAC	AAGGAGTGATTTCTATTTCCTTTCTTAAAGAGGAGGAAC	-			P-0050454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	56	165	0	ENST00000377970.2:c.803-27_814del		p.X268_splice	ENST00000377970	NM_002467.4	268																																																																															
MED12	9968	MSKCC	GRCh37	X	70344193	70344193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			9	181	351	0	ENST00000374080.3:c.1929C>A	p.Asp643Glu	p.D643E	ENST00000374080		643	gaC/gaA																																																																														
KIT	3815	MSKCC	GRCh37	4	55593602	55593606	+	protein_altering_variant	In_Frame_Del	DEL	GTGGA	GTGGA	AC			P-0050457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	187	329	0	ENST00000288135.5:c.1668_1672delinsAC	p.Trp557_Lys558delinsGln	p.W557_K558delinsQ	ENST00000288135	NM_000222.2	556	caGTGGAag/caACag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930399	39930399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	124	230	0	ENST00000378444.4:c.3065G>A	p.Arg1022His	p.R1022H	ENST00000378444	NM_001123385.1	1022	cGc/cAc																																																																														
MPL	4352	MSKCC	GRCh37	1	43812538	43812538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	170	666	0	ENST00000372470.3:c.1241C>T	p.Ser414Leu	p.S414L	ENST00000372470	NM_005373.2	414	tCg/tTg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276477	115276477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	73	513	0	ENST00000438362.2:c.851G>A	p.Gly284Asp	p.G284D	ENST00000438362	NM_001242891.1	284	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	164	448	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	220	489	1	ENST00000257904.6:c.71G>A	p.Arg24His	p.R24H	ENST00000257904	NM_000075.3	24	cGt/cAt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562747	21562747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	1212	706	1	ENST00000382592.4:c.1172G>A	p.Arg391His	p.R391H	ENST00000382592	NM_014572.2	391	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577600	7577601	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	228	539	0	ENST00000269305.4:c.680_681del	p.Ser227Ter	p.S227*	ENST00000269305	NM_001126112.2	227	tCT/t																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118858	70118858	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	150	572	0	ENST00000245479.2:c.432-2A>T		p.X144_splice	ENST00000245479	NM_000346.3	144																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	27	274	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876218	35876218	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	101	521	0	ENST00000303115.3:c.1010A>C	p.Lys337Thr	p.K337T	ENST00000303115	NM_002185.3	337	aAg/aCg																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	207	259	1	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641128	117641128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140237260		P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	121	581	0	ENST00000368508.3:c.5843G>A	p.Arg1948His	p.R1948H	ENST00000368508	NM_002944.2	1948	cGt/cAt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508647	106508647	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	244	606	0	ENST00000359195.3:c.641A>G	p.Lys214Arg	p.K214R	ENST00000359195	NM_002649.2	214	aAg/aGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030633	47030639	+	intron_variant	Intron	DEL	GCCACAG	GCCACAG	-			P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	330	386	0	ENST00000329236.7:c.201+1738_201+1744del		p.*67*	ENST00000329236	NM_001204466.1																																																																																
ARAF	369	MSKCC	GRCh37	X	47426737	47426737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200106543		P-0050486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	346	399	0	ENST00000377045.4:c.982C>T	p.Arg328Trp	p.R328W	ENST00000377045	NM_001654.4	328	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112174438	112174438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	27	247	0	ENST00000257430.4:c.3147G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	580	685	1	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570404	87570404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	157	753	1	ENST00000277120.3:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000277120		715	cGg/cAg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372007	55372007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1601	131	554	0	ENST00000297316.4:c.697G>A	p.Asp233Asn	p.D233N	ENST00000297316	NM_022454.3	233	Gac/Aac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983995	2983995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	289	658	1	ENST00000396946.4:c.535C>T	p.Arg179Trp	p.R179W	ENST00000396946	NM_032415.4	179	Cgg/Tgg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609958	81609958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	71	419	0	ENST00000298171.2:c.1556G>A	p.Arg519His	p.R519H	ENST00000298171	NM_000369.2	519	cGc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70338650	70338650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	286	640	1	ENST00000374080.3:c.46C>T	p.Arg16Trp	p.R16W	ENST00000374080		16	Cgg/Tgg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178129262	178129262	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	239	378	0	ENST00000397062.3:c.43C>G	p.Gln15Glu	p.Q15E	ENST00000397062	NM_006164.4	15	Cag/Gag																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434174	12434174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	67	460	0	ENST00000287820.6:c.542G>C	p.Arg181Pro	p.R181P	ENST00000287820	NM_015869.4	181	cGg/cCg																																																																														
APC	324	MSKCC	GRCh37	5	112174770	112174771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	76	250	0	ENST00000257430.4:c.3482dup	p.Asn1161LysfsTer3	p.N1161Kfs*3	ENST00000257430	NM_000038.5	1160	aca/acAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	120	599	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	77	759	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	115	950	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651995	36651995	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	67	1105	0	ENST00000244741.5:c.119del	p.Gly40AlafsTer108	p.G40Afs*108	ENST00000244741	NM_000389.4	39	gcG/gc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983121	201983122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	204	853	0	ENST00000359651.3:c.971dup	p.Met324IlefsTer147	p.M324Ifs*147	ENST00000359651		324	atg/aTtg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349778	15349778	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199833114		P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1383	89	1193	2	ENST00000263377.2:c.3796G>A	p.Glu1266Lys	p.E1266K	ENST00000263377	NM_058243.2	1266	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	67	586	0	ENST00000262367.5:c.4337del	p.Arg1446ProfsTer13	p.R1446Pfs*13	ENST00000262367	NM_004380.2	1446	cGc/cc																																																																														
RARA	5914	MSKCC	GRCh37	17	38512384	38512384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	37	622	0	ENST00000254066.5:c.1295G>A	p.Arg432Gln	p.R432Q	ENST00000254066	NM_000964.3	432	cGg/cAg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982983	201982986	+	frameshift_variant	Frame_Shift_Del	DEL	TTCA	TTCA	-			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	221	1082	0	ENST00000359651.3:c.833_836del	p.Phe278SerfsTer15	p.F278Sfs*15	ENST00000359651		278	TTCAtc/tc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983017	201983018	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	234	1108	0	ENST00000359651.3:c.867_868dup	p.Glu290AlafsTer5	p.E290Afs*5	ENST00000359651		289	aac/aaCGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447788	49447788	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	75	760	2	ENST00000301067.7:c.646G>T	p.Glu216Ter	p.E216*	ENST00000301067	NM_003482.3	216	Gag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246344	41246344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	186	687	0	ENST00000357654.3:c.1204G>A	p.Glu402Lys	p.E402K	ENST00000357654	NM_007294.3	402	Gag/Aag																																																																														
CARM1	10498	MSKCC	GRCh37	19	11027128	11027128	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199572188		P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3553	259	1152	2	ENST00000327064.4:c.893C>T	p.Thr298Met	p.T298M	ENST00000327064	NM_199141.1	298	aCg/aTg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349745	15349745	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1379	101	1222	0	ENST00000263377.2:c.3829G>C	p.Glu1277Gln	p.E1277Q	ENST00000263377	NM_058243.2	1277	Gag/Cag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350501	15350501	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1263	83	1124	0	ENST00000263377.2:c.3414G>C	p.Glu1138Asp	p.E1138D	ENST00000263377	NM_058243.2	1138	gaG/gaC																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982503	25982503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	45	320	0	ENST00000435504.4:c.787A>G	p.Arg263Gly	p.R263G	ENST00000435504		263	Aga/Gga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436407	52436407	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	107	999	1	ENST00000460680.1:c.2087T>A	p.Ile696Asn	p.I696N	ENST00000460680	NM_004656.3	696	aTc/aAc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798466	32798466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	72	955	3	ENST00000374899.4:c.1390C>A	p.Leu464Met	p.L464M	ENST00000374899	NM_018833.2	464	Ctg/Atg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137320984	137320984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	417	1152	0	ENST00000481739.1:c.941C>G	p.Ser314Cys	p.S314C	ENST00000481739	NM_002957.4	314	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	578	805	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	127	504	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982096	93982096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	217	545	2	ENST00000369303.4:c.1369C>T	p.Arg457Trp	p.R457W	ENST00000369303	NM_004440.3	457	Cgg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966768	44966768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	127	272	0	ENST00000377967.4:c.3992G>A	p.Cys1331Tyr	p.C1331Y	ENST00000377967	NM_021140.2	1331	tGt/tAt																																																																														
TP63	8626	MSKCC	GRCh37	3	189612188	189612188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	243	591	1	ENST00000264731.3:c.1940G>A	p.Arg647His	p.R647H	ENST00000264731	NM_003722.4	647	cGc/cAc																																																																														
ALK	238	MSKCC	GRCh37	2	29456430	29456430	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	180	607	0	ENST00000389048.3:c.2487+1G>T		p.X829_splice	ENST00000389048	NM_004304.4	829																																																																															
APC	324	MSKCC	GRCh37	5	112175884	112175885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0050491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	89	284	0	ENST00000257430.4:c.4593_4594insTG	p.Asp1532TrpfsTer34	p.D1532Wfs*34	ENST00000257430	NM_000038.5	1531	-/TG																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	46	465	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	22	339	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	71	583	2	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	61	708	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	61	708	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac																																																																														
NF1	4763	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	81	520	2	ENST00000358273.4:c.2033delC	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																																																														
CIC	23152	MSKCC	GRCh37	19	42790944	42790944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	49	700	1	ENST00000575354.2:c.89G>A	p.Arg30His	p.R30H	ENST00000575354	NM_015125.3	30	cGc/cAc																																																																														
ALK	238	MSKCC	GRCh37	2	29474041	29474041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs78723472		P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	48	785	0	ENST00000389048.3:c.2134G>A	p.Val712Met	p.V712M	ENST00000389048	NM_004304.4	712	Gtg/Atg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564697	86564698	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	45	702	0	ENST00000274376.6:c.434dup	p.Leu146PhefsTer12	p.L146Ffs*12	ENST00000274376	NM_002890.2	143	-/C																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244076	46244076	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	30	415	0	ENST00000334344.6:c.2173del	p.Gln725ArgfsTer33	p.Q725Rfs*33	ENST00000334344	NM_152641.2	724	Ccc/cc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510134	120510134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	44	471	1	ENST00000256646.2:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000256646	NM_024408.3	459	Gag/Aag																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422068	81422068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	26	518	0	ENST00000298171.2:c.44T>C	p.Leu15Pro	p.L15P	ENST00000298171	NM_000369.2	15	cTg/cCg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645372	67645372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	29	355	1	ENST00000264010.4:c.637C>T	p.Arg213Cys	p.R213C	ENST00000264010	NM_006565.3	213	Cgt/Tgt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053545	37053545	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	42	520	0	ENST00000231790.2:c.632C>G	p.Ser211Ter	p.S211*	ENST00000231790	NM_000249.3	211	tCa/tGa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524452	187524452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	45	486	0	ENST00000441802.2:c.11228G>A	p.Cys3743Tyr	p.C3743Y	ENST00000441802	NM_005245.3	3743	tGc/tAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	60	431	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	218	696	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431634	6431634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	76	356	0	ENST00000356142.4:c.187G>C	p.Asp63His	p.D63H	ENST00000356142	NM_018890.3	63	Gat/Cat																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195794	102195794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	27	429	0	ENST00000263464.3:c.554C>T	p.Ser185Leu	p.S185L	ENST00000263464	NM_001165.4	185	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420670	49420670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	152	644	0	ENST00000301067.7:c.15079C>T	p.Arg5027Ter	p.R5027*	ENST00000301067	NM_003482.3	5027	Cga/Tga																																																																														
ID3	3399	MSKCC	GRCh37	1	23885731	23885731	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	87	870	0	ENST00000374561.5:c.187C>T	p.Gln63Ter	p.Q63*	ENST00000374561	NM_002167.4	63	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830454	72830454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	56	307	0	ENST00000268489.5:c.6127C>T	p.Pro2043Ser	p.P2043S	ENST00000268489	NM_006885.3	2043	Ccc/Tcc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158626892	158626892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	87	483	0	ENST00000263640.3:c.778G>A	p.Glu260Lys	p.E260K	ENST00000263640	NM_001105.4	260	Gaa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259651	11259651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	127	554	0	ENST00000361445.4:c.4054G>A	p.Glu1352Lys	p.E1352K	ENST00000361445	NM_004958.3	1352	Gaa/Aaa																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944947	31944947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	76	408	0	ENST00000340398.3:c.154C>G	p.Arg52Gly	p.R52G	ENST00000340398	NM_001013699.2	52	Cgt/Ggt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81902822	81902822	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	85	467	0	ENST00000359376.3:c.483C>G	p.Ile161Met	p.I161M	ENST00000359376	NM_002661.3	161	atC/atG																																																																														
MSH2	4436	MSKCC	GRCh37	2	47641537	47641537	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	33	346	0	ENST00000233146.2:c.922A>T	p.Arg308Ter	p.R308*	ENST00000233146	NM_000251.2	308	Aga/Tga																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22162062	22162062	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	44	504	0	ENST00000215832.6:c.193T>C	p.Cys65Arg	p.C65R	ENST00000215832	NM_002745.4	65	Tgc/Cgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151902311	151902311	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0050495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	32	165	0	ENST00000262189.6:c.3842-1G>A		p.X1281_splice	ENST00000262189	NM_170606.2	1281																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0050496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	178	478	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	128	392	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	90	368	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	94	372	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
HRAS	3265	MSKCC	GRCh37	11	532731	532731	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	247	783	0	ENST00000311189.7:c.475T>G	p.Leu159Val	p.L159V	ENST00000311189		159	Ttg/Gtg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808953	3808953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	187	470	0	ENST00000262367.5:c.3271C>T	p.Arg1091Cys	p.R1091C	ENST00000262367	NM_004380.2	1091	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	273	658	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
LMO1	4004	MSKCC	GRCh37	11	8252045	8252045	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	273	686	0	ENST00000335790.3:c.32C>G	p.Pro11Arg	p.P11R	ENST00000335790	NM_002315.2	11	cCg/cGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	139	436	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	147	474	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	69	813	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	230	668	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	186	417	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44870231	44870231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	244	255	1	ENST00000377967.4:c.410G>T	p.Gly137Val	p.G137V	ENST00000377967	NM_021140.2	137	gGt/gTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030637	47030637	+	intron_variant	Intron	SNP	C	C	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	398	496	0	ENST00000329236.7:c.201+1740C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
PMS1	5378	MSKCC	GRCh37	2	190728500	190728500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs139932286		P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	153	387	1	ENST00000441310.2:c.1888C>T	p.Arg630Ter	p.R630*	ENST00000441310	NM_000534.4	630	Cga/Tga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061887	38061887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	324	941	0	ENST00000250448.2:c.102G>A	p.Met34Ile	p.M34I	ENST00000250448	NM_004496.3	34	atG/atA																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308081	30308081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	264	701	0	ENST00000262643.3:c.218C>T	p.Ser73Phe	p.S73F	ENST00000262643	NM_001238.2	73	tCc/tTc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346352	73346352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	178	429	0	ENST00000377767.4:c.1448G>T	p.Cys483Phe	p.C483F	ENST00000377767	NM_014953.3	483	tGt/tTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243948	41243948	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs56214134		P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	85	675	0	ENST00000357654.3:c.3600G>C	p.Gln1200His	p.Q1200H	ENST00000357654	NM_007294.3	1200	caG/caC																																																																														
ALK	238	MSKCC	GRCh37	2	30143370	30143370	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	273	893	0	ENST00000389048.3:c.156G>C	p.Lys52Asn	p.K52N	ENST00000389048	NM_004304.4	52	aaG/aaC																																																																														
TET2	54790	MSKCC	GRCh37	4	106197104	106197104	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	197	481	1	ENST00000380013.4:c.5437C>T	p.Gln1813Ter	p.Q1813*	ENST00000380013	NM_001127208.2	1813	Caa/Taa																																																																														
TET1	80312	MSKCC	GRCh37	10	70405847	70405847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	251	540	0	ENST00000373644.4:c.3361G>T	p.Gly1121Cys	p.G1121C	ENST00000373644	NM_030625.2	1121	Ggc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710993	114710993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	199	530	1	ENST00000543371.1:c.217G>A	p.Glu73Lys	p.E73K	ENST00000543371	NM_001198531.1	73	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375404	118375404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	177	422	0	ENST00000534358.1:c.8797G>C	p.Asp2933His	p.D2933H	ENST00000534358	NM_005933.3	2933	Gat/Cat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415915	49415915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	216	571	0	ENST00000301067.7:c.16432G>A	p.Ala5478Thr	p.A5478T	ENST00000301067	NM_003482.3	5478	Gcc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432554	49432554	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	326	943	0	ENST00000301067.7:c.8585C>G	p.Pro2862Arg	p.P2862R	ENST00000301067	NM_003482.3	2862	cCa/cGa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95578573	95578573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	143	371	0	ENST00000343455.3:c.2052G>A	p.Met684Ile	p.M684I	ENST00000343455	NM_177438.2	684	atG/atA																																																																														
B2M	567	MSKCC	GRCh37	15	45007755	45007755	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	207	501	0	ENST00000558401.1:c.202A>G	p.Lys68Glu	p.K68E	ENST00000558401	NM_004048.2	68	Aaa/Gaa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639575	3639575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	345	1105	0	ENST00000294008.3:c.4064C>T	p.Ser1355Phe	p.S1355F	ENST00000294008	NM_032444.2	1355	tCt/tTt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639621	3639621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	397	1088	0	ENST00000294008.3:c.4018C>A	p.His1340Asn	p.H1340N	ENST00000294008	NM_032444.2	1340	Cac/Aac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37876071	37876109	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCGAGCAGAGAGCCAGGTTGGCCTGGACCCCAGGATGT	GCCGAGCAGAGAGCCAGGTTGGCCTGGACCCCAGGATGT	-			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	180	864	0	ENST00000269571.5:c.1930_1946+22del		p.X644_splice	ENST00000269571		644																																																																															
BRCA1	672	MSKCC	GRCh37	17	41244082	41244082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	63	619	0	ENST00000357654.3:c.3466G>A	p.Asp1156Asn	p.D1156N	ENST00000357654	NM_007294.3	1156	Gat/Aat																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244294	41244294	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	76	709	0	ENST00000357654.3:c.3254G>C	p.Arg1085Thr	p.R1085T	ENST00000357654	NM_007294.3	1085	aGa/aCa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244436	41244436	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	62	616	0	ENST00000357654.3:c.3112G>C	p.Glu1038Gln	p.E1038Q	ENST00000357654	NM_007294.3	1038	Gaa/Caa																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18272278	18272278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	12	40	0	ENST00000222254.8:c.788C>T	p.Ser263Leu	p.S263L	ENST00000222254	NM_005027.3	263	tCg/tTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	326	953	0	ENST00000391945.4:c.713A>C	p.Asn238Thr	p.N238T	ENST00000391945	NM_000400.3	238	aAc/aCc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190738314	190738314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	162	418	0	ENST00000441310.2:c.2566G>A	p.Ala856Thr	p.A856T	ENST00000441310	NM_000534.4	856	Gct/Act																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660564	227660564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	316	904	2	ENST00000305123.5:c.2891G>A	p.Arg964Lys	p.R964K	ENST00000305123	NM_005544.2	964	aGa/aAa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940747	49940747	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	256	940	0	ENST00000296474.3:c.296C>G	p.Pro99Arg	p.P99R	ENST00000296474	NM_002447.2	99	cCt/cGt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440366	52440366	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	295	831	0	ENST00000460680.1:c.686A>T	p.Asn229Ile	p.N229I	ENST00000460680	NM_004656.3	229	aAc/aTc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751931	57751931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	61	606	0	ENST00000274289.3:c.1306G>C	p.Glu436Gln	p.E436Q	ENST00000274289	NM_006622.3	436	Gaa/Caa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522624	67522624	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	183	485	0	ENST00000274335.5:c.121G>T	p.Gly41Ter	p.G41*	ENST00000274335		41	Gga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884860	151884860	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	235	532	0	ENST00000262189.6:c.4733del	p.Pro1578HisfsTer87	p.P1578Hfs*87	ENST00000262189	NM_170606.2	1578	cCa/ca																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942704	44942704	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	197	239	0	ENST00000377967.4:c.3285-1G>C		p.X1095_splice	ENST00000377967	NM_021140.2	1095																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223338	53223338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	308	393	2	ENST00000375401.3:c.4021G>A	p.Gly1341Ser	p.G1341S	ENST00000375401	NM_004187.3	1341	Ggc/Agc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	67	404	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	117	612	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	129	558	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	282	714	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	58	457	0	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	78	414	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631413	117631413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	50	314	2	ENST00000368508.3:c.6265G>A	p.Val2089Met	p.V2089M	ENST00000368508	NM_002944.2	2089	Gtg/Atg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	66	362	5	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
CASP8	841	MSKCC	GRCh37	2	202149710	202149710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	145	566	1	ENST00000358485.4:c.1151G>A	p.Gly384Asp	p.G384D	ENST00000358485	NM_001080125.1	384	gGc/gAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644679	134644679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773064927		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	103	467	0	ENST00000398015.3:c.80C>T	p.Thr27Met	p.T27M	ENST00000398015	NM_004441.4	27	aCg/aTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	148	700	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	76	392	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	75	392	3	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	75	430	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	90	608	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	76	352	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	83	455	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	109	425	2	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868176	45868176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140175332		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	173	831	3	ENST00000391945.4:c.514G>A	p.Ala172Thr	p.A172T	ENST00000391945	NM_000400.3	172	Gct/Act																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449779	149449779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	127	678	0	ENST00000286301.3:c.1285G>A	p.Val429Met	p.V429M	ENST00000286301	NM_005211.3	429	Gtg/Atg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	104	568	0	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	82	539	1	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	93	548	4	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016675	12016675	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	55	341	0	ENST00000353533.5:c.811G>A	p.Ala271Thr	p.A271T	ENST00000353533	NM_003010.3	271	Gca/Aca																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	80	506	3	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	92	418	0	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860842	151860842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	100	445	1	ENST00000262189.6:c.9820G>A	p.Ala3274Thr	p.A3274T	ENST00000262189	NM_170606.2	3274	Gca/Aca																																																																														
HGF	3082	MSKCC	GRCh37	7	81388044	81388045	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	42	389	1	ENST00000222390.5:c.330dup	p.Glu111ArgfsTer5	p.E111Rfs*5	ENST00000222390	NM_000601.4	110	-/A																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783668	50783668	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	70	492	0	ENST00000398568.2:c.64del	p.Tyr22ThrfsTer25	p.Y22Tfs*25	ENST00000398568	NM_001042412.1	20	aTt/at																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738808	145738808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	116	1028	0	ENST00000428558.2:c.2257C>T	p.Arg753Trp	p.R753W	ENST00000428558	NM_004260.3	753	Cgg/Tgg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162916	38162916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	98	527	1	ENST00000317025.8:c.2290C>T	p.Arg764Cys	p.R764C	ENST00000317025	NM_023034.1	764	Cgt/Tgt																																																																														
EP300	2033	MSKCC	GRCh37	22	41523642	41523642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	164	579	0	ENST00000263253.7:c.1058G>A	p.Arg353His	p.R353H	ENST00000263253	NM_001429.3	353	cGc/cAc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324139	31324139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	75	643	0	ENST00000412585.2:c.424T>C	p.Tyr142His	p.Y142H	ENST00000412585	NM_005514.6	142	Tac/Cac																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247355	71247355	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	119	548	1	ENST00000318789.4:c.178C>T	p.Gln60Ter	p.Q60*	ENST00000318789	NM_032682.5	60	Cag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229375	36229375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	107	616	0	ENST00000222270.7:c.8065G>A	p.Asp2689Asn	p.D2689N	ENST00000222270	NM_014727.1	2689	Gac/Aac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932791	39932791	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	160	710	0	ENST00000378444.4:c.1808C>G	p.Ala603Gly	p.A603G	ENST00000378444	NM_001123385.1	603	gCc/gGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991664	72991664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	90	495	0	ENST00000268489.5:c.2381C>T	p.Ser794Leu	p.S794L	ENST00000268489	NM_006885.3	794	tCg/tTg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430666	181430666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	138	761	0	ENST00000325404.1:c.518T>C	p.Met173Thr	p.M173T	ENST00000325404	NM_003106.3	173	aTg/aCg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023607	27023613	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCGGG	CTCCGGG	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	104	435	0	ENST00000324856.7:c.719_725del	p.Gly240AlafsTer121	p.G240Afs*121	ENST00000324856	NM_006015.4	238	aCTCCGGGc/ac																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612800	228612800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	138	727	0	ENST00000366696.1:c.227C>A	p.Ala76Asp	p.A76D	ENST00000366696	NM_003493.2	76	gCt/gAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246197	46246197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	91	362	0	ENST00000334344.6:c.4291A>G	p.Ile1431Val	p.I1431V	ENST00000334344	NM_152641.2	1431	Ata/Gta																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424448	49424449	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	130	737	0	ENST00000301067.7:c.13774_13775insT	p.Arg4592MetfsTer14	p.R4592Mfs*14	ENST00000301067	NM_003482.3	4592	agg/aTgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433772	49433772	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	170	947	0	ENST00000301067.7:c.7781T>C	p.Leu2594Pro	p.L2594P	ENST00000301067	NM_003482.3	2594	cTg/cCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447286	49447286	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	131	633	0	ENST00000301067.7:c.812del	p.Pro271LeufsTer33	p.P271Lfs*33	ENST00000301067	NM_003482.3	271	cCt/ct																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061168	38061168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	114	397	0	ENST00000250448.2:c.821C>G	p.Ala274Gly	p.A274G	ENST00000250448	NM_004496.3	274	gCc/gGc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95579439	95579439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	44	294	0	ENST00000343455.3:c.2030C>T	p.Ala677Val	p.A677V	ENST00000343455	NM_177438.2	677	gCc/gTc																																																																														
AKT1	207	MSKCC	GRCh37	14	105237115	105237115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	129	562	0	ENST00000349310.3:c.1330G>A	p.Ala444Thr	p.A444T	ENST00000349310	NM_001014432.1	444	Gcc/Acc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15978884	15978884	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	148	498	0	ENST00000268712.3:c.3634T>C	p.Tyr1212His	p.Y1212H	ENST00000268712	NM_006311.3	1212	Tat/Cat																																																																														
INSR	3643	MSKCC	GRCh37	19	7163055	7163055	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	102	494	0	ENST00000302850.5:c.2017T>C	p.Tyr673His	p.Y673H	ENST00000302850	NM_000208.2	673	Tat/Cat																																																																														
CARM1	10498	MSKCC	GRCh37	19	11032387	11032387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	124	820	2	ENST00000327064.4:c.1781C>T	p.Ala594Val	p.A594V	ENST00000327064	NM_199141.1	594	gCg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11169467	11169467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	134	628	0	ENST00000344626.4:c.4537C>T	p.Arg1513Cys	p.R1513C	ENST00000344626	NM_003072.3	1513	Cgc/Tgc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256806	19256806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	136	739	1	ENST00000162023.5:c.907G>A	p.Gly303Ser	p.G303S	ENST00000162023		303	Ggt/Agt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41818293	41818293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	26	66	0	ENST00000373198.4:c.81C>A	p.Ser27Arg	p.S27R	ENST00000373198	NM_133170.3	27	agC/agA																																																																														
RYBP	23429	MSKCC	GRCh37	3	72428465	72428497	+	inframe_deletion	In_Frame_Del	DEL	TTCTCTTTGTCCTGCTTTTCAACTTTCTCCTTC	TTCTCTTTGTCCTGCTTTTCAACTTTCTCCTTC	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	71	431	0	ENST00000477973.2:c.505_537del	p.Lys170_Lys180del	p.K170_K180del	ENST00000477973	NM_012234.5	169	aaGAAGGAGAAAGTTGAAAAGCAGGACAAAGAGAAa/aaa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957534	1957534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	165	702	1	ENST00000382891.5:c.2633T>C	p.Leu878Pro	p.L878P	ENST00000382891	NM_133335.3	878	cTg/cCg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361231	66361232	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	48	330	0	ENST00000273854.3:c.940_941delinsAT	p.Pro314Ile	p.P314I	ENST00000273854	NM_004439.5	314	CCt/ATt																																																																														
TET2	54790	MSKCC	GRCh37	4	106196366	106196366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	55	374	0	ENST00000380013.4:c.4699A>G	p.Asn1567Asp	p.N1567D	ENST00000380013	NM_001127208.2	1567	Aat/Gat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38972017	38972017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	33	313	0	ENST00000357387.3:c.934C>A	p.Leu312Ile	p.L312I	ENST00000357387	NM_152756.3	312	Cta/Ata																																																																														
SMO	6608	MSKCC	GRCh37	7	128852185	128852185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	156	805	1	ENST00000249373.3:c.2257C>T	p.Pro753Ser	p.P753S	ENST00000249373	NM_005631.4	753	Ccg/Tcg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127916205	127916206	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	85	466	0	ENST00000373547.4:c.438dup	p.Asp147Ter	p.D147*	ENST00000373547	NM_002721.4	146	-/T																																																																														
MED12	9968	MSKCC	GRCh37	X	70356386	70356386	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	81	597	1	ENST00000374080.3:c.5285del	p.Lys1762ArgfsTer53	p.K1762Rfs*53	ENST00000374080		1761	Aaa/aa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183797	10183797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	486	683	0	ENST00000256474.2:c.266T>C	p.Leu89Pro	p.L89P	ENST00000256474	NM_000551.3	89	cTc/cCc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209103900	209103902	+	inframe_deletion	In_Frame_Del	DEL	TTA	TTA	-			P-0050510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	253	383	0	ENST00000345146.2:c.1047_1049del	p.Asn349del	p.N349del	ENST00000345146	NM_005896.2	349	aaTAAa/aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52582105	52582106	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0050510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	162	242	0	ENST00000394830.3:c.4722_4723del	p.Gln1575SerfsTer20	p.Q1575Sfs*20	ENST00000394830	NM_018313.4	1574	cgCCaa/cgaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	131	615	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0050511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	35	302	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	115	484	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69631102	69631102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	136	620	0	ENST00000334134.2:c.310C>T	p.Arg104Ter	p.R104*	ENST00000334134	NM_005247.2	104	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023842	27023842	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	88	416	0	ENST00000324856.7:c.948C>G	p.Tyr316Ter	p.Y316*	ENST00000324856	NM_006015.4	316	taC/taG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	23	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	182	602	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879628	37879628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1572	244	724	0	ENST00000269571.5:c.2003G>C	p.Gly668Ala	p.G668A	ENST00000269571		668	gGg/gCg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573556	48573556	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	17	250	0	ENST00000342988.3:c.140T>G	p.Leu47Arg	p.L47R	ENST00000342988	NM_005359.5	47	cTg/cGg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803148	1803148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1569	94	871	3	ENST00000260795.2:c.500C>T	p.Pro167Leu	p.P167L	ENST00000260795		167	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	175	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	110	319	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	270	576	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	153	414	0	ENST00000342988.3:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000342988	NM_005359.5	537	Gac/Tac																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	615	695	2	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
TP63	8626	MSKCC	GRCh37	3	189584501	189584501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	123	357	0	ENST00000264731.3:c.797G>A	p.Arg266Gln	p.R266Q	ENST00000264731	NM_003722.4	266	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112176020	112176020	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	110	262	0	ENST00000257430.4:c.4729G>T	p.Glu1577Ter	p.E1577*	ENST00000257430	NM_000038.5	1577	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420273	49420273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	269	649	0	ENST00000301067.7:c.15476G>A	p.Arg5159Gln	p.R5159Q	ENST00000301067	NM_003482.3	5159	cGg/cAg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111886044	111886044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	233	604	1	ENST00000341259.2:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000341259	NM_005475.2	556	Gaa/Aaa																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2491276	2491276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	328	824	0	ENST00000355716.4:c.319G>A	p.Ala107Thr	p.A107T	ENST00000355716	NM_003820.2	107	Gcg/Acg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	121	347	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	219	596	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004721	150004721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	132	422	0	ENST00000253339.5:c.1504C>T	p.Arg502Cys	p.R502C	ENST00000253339		502	Cgt/Tgt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354431	354431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	96	585	0	ENST00000262320.3:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000262320	NM_003502.3	376	cGg/cAg																																																																														
ATR	545	MSKCC	GRCh37	3	142172007	142172007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	100	428	2	ENST00000350721.4:c.7724C>T	p.Ala2575Val	p.A2575V	ENST00000350721	NM_001184.3	2575	gCg/gTg																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023327	33023336	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAAGAAAT	CCCAAGAAAT	-			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	115	558	0	ENST00000300177.4:c.436_445del	p.Pro146SerfsTer4	p.P146Sfs*4	ENST00000300177	NM_001191322.1	146	CCCAAGAAATtc/tc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437567	56437568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAGTTACGATGGGTGG			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	115	463	0	ENST00000407977.2:c.894_895insCCACCCATCGTAACTGT	p.Val299ProfsTer126	p.V299Pfs*126	ENST00000407977		298	-/CCACCCATCGTAACTGT																																																																														
BARD1	580	MSKCC	GRCh37	2	215646206	215646206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	77	283	0	ENST00000260947.4:c.392G>A	p.Ser131Asn	p.S131N	ENST00000260947	NM_000465.2	131	aGt/aAt																																																																														
CIC	23152	MSKCC	GRCh37	19	42796834	42796834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	207	766	1	ENST00000575354.2:c.3292G>A	p.Gly1098Ser	p.G1098S	ENST00000575354	NM_015125.3	1098	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	366	612	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
SMO	6608	MSKCC	GRCh37	7	128851916	128851916	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	80	674	0	ENST00000249373.3:c.1988C>G	p.Pro663Arg	p.P663R	ENST00000249373	NM_005631.4	663	cCa/cGa																																																																														
SESN2	83667	MSKCC	GRCh37	1	28586389	28586389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	126	433	1	ENST00000253063.3:c.31G>C	p.Glu11Gln	p.E11Q	ENST00000253063	NM_031459.4	11	Gag/Cag																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245912952	245912952	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	73	322	0	ENST00000388985.4:c.1200G>C	p.Met400Ile	p.M400I	ENST00000388985		400	atG/atC																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112602	115112604	+	missense_variant	Missense_Mutation	ONP	CGG	CGG	TTT			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	202	597	0	ENST00000257566.3:c.1136_1138delinsAAA	p.Ala379_Glu380delinsGluLys	p.A379_E380delinsEK	ENST00000257566	NM_016569.3	379	gCCGag/gAAAag																																																																														
RB1	5925	MSKCC	GRCh37	13	48947596	48947596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	113	347	0	ENST00000267163.4:c.1183C>T	p.Gln395Ter	p.Q395*	ENST00000267163	NM_000321.2	395	Caa/Taa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3652273	3652273	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	215	575	1	ENST00000294008.3:c.796G>C	p.Ala266Pro	p.A266P	ENST00000294008	NM_032444.2	266	Gct/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	227	571	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732314	74732314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	135	347	1	ENST00000359995.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000359995	NM_001195427.1	199	Gaa/Aaa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223667	36223667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	563	902	0	ENST00000222270.7:c.6217G>A	p.Glu2073Lys	p.E2073K	ENST00000222270	NM_014727.1	2073	Gag/Aag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39234318	39234318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	154	230	0	ENST00000402219.2:c.2527G>A	p.Glu843Lys	p.E843K	ENST00000402219	NM_005633.3	843	Gaa/Aaa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149245662	149245662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	319	491	0	ENST00000360632.3:c.866G>C	p.Arg289Thr	p.R289T	ENST00000360632	NM_015472.4	289	aGa/aCa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170009729	170009729	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	107	199	0	ENST00000295797.4:c.1291G>T	p.Gly431Cys	p.G431C	ENST00000295797	NM_002740.5	431	Ggt/Tgt																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170015122	170015122	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	229	458	0	ENST00000295797.4:c.1528C>G	p.Gln510Glu	p.Q510E	ENST00000295797	NM_002740.5	510	Caa/Gaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	144	329	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	88	172	0				ENST00000310581	NM_198253.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151932982	151932982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	30	38	0	ENST00000262189.6:c.2689C>T	p.Arg897Ter	p.R897*	ENST00000262189	NM_170606.2	897	Cga/Tga																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275454	38275454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	90	621	0	ENST00000425967.3:c.1579G>C	p.Glu527Gln	p.E527Q	ENST00000425967	NM_001174067.1	527	Gag/Cag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485981	8485981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	78	394	0	ENST00000356435.5:c.2836G>A	p.Glu946Lys	p.E946K	ENST00000356435		946	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0050532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	48	236	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0050532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	32	254	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0050532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	59	190	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279674	123279674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	227	383	0	ENST00000358487.5:c.758C>G	p.Pro253Arg	p.P253R	ENST00000358487	NM_000141.4	253	cCt/cGt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591228	67591277	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAA	TTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAA	-			P-0050532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	42	278	0	ENST00000274335.5:c.1746-20_1775del		p.X582_splice	ENST00000274335		582																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0050533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	26	327	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579486	7579486	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	79	772	0	ENST00000269305.4:c.201del	p.Glu68ArgfsTer55	p.E68Rfs*55	ENST00000269305	NM_001126112.2	67	ccA/cc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30686345	30686346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0050533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	41	406	0	ENST00000359013.4:c.277_278dup	p.Met93IlefsTer2	p.M93Ifs*2	ENST00000359013	NM_001024847.2	92	-/AT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	186	536	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	116	347	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716326	52716326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	208	574	2	ENST00000322088.6:c.770G>T	p.Trp257Leu	p.W257L	ENST00000322088	NM_014225.5	257	tGg/tTg																																																																														
MAX	4149	MSKCC	GRCh37	14	65543343	65543343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	78	566	0	ENST00000358664.4:c.334C>A	p.Gln112Lys	p.Q112K	ENST00000358664	NM_002382.4	112	Cag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828341	72828342	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0050534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	75	571	0	ENST00000268489.5:c.8239_8240del	p.Leu2747ValfsTer8	p.L2747Vfs*8	ENST00000268489	NM_006885.3	2747	CTg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	261	564	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060846	38060864	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCAAGCCGTGTGCC	GGGTGCCAAGCCGTGTGCC	-			P-0050540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	328	671	1	ENST00000250448.2:c.1125_1143del	p.Ala376ThrfsTer7	p.A376Tfs*7	ENST00000250448	NM_004496.3	375	ccGGCACACGGCTTGGCACCC/cc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78935274	78935274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	106	621	1	ENST00000306801.3:c.3686G>A	p.Ser1229Asn	p.S1229N	ENST00000306801	NM_020761.2	1229	aGt/aAt																																																																														
IL10	3586	MSKCC	GRCh37	1	206944257	206944257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	35	336	0	ENST00000423557.1:c.373C>T	p.Arg125Cys	p.R125C	ENST00000423557	NM_000572.2	125	Cgc/Tgc																																																																														
MYC	4609	MSKCC	GRCh37	8	128752989	128752989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	78	393	1	ENST00000377970.2:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000377970	NM_002467.4	384	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11113761	11113761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	59	558	0	ENST00000344626.4:c.1869G>C	p.Glu623Asp	p.E623D	ENST00000344626	NM_003072.3	623	gaG/gaC																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178236	56178236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	29	288	0	ENST00000399503.3:c.3209C>A	p.Thr1070Lys	p.T1070K	ENST00000399503	NM_005921.1	1070	aCa/aAa																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774119	56774119	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	32	507	0	ENST00000337432.4:c.470T>G	p.Phe157Cys	p.F157C	ENST00000337432	NM_058216.2	157	tTt/tGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	37	492	0	ENST00000304494.5:c.132C>A	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	37	492	0	ENST00000304494.5:c.132C>A	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44879871	44879871	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	173	218	0	ENST00000377967.4:c.460C>T	p.Gln154Ter	p.Q154*	ENST00000377967	NM_021140.2	154	Cag/Tag																																																																														
RHOA	387	MSKCC	GRCh37	3	49397742	49397742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552757		P-0050547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	323	547	0	ENST00000418115.1:c.482C>T	p.Ala161Val	p.A161V	ENST00000418115	NM_001664.2	161	gCa/gTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0050547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	235	373	0				ENST00000310581	NM_198253.2																																																																																
PARP1	142	MSKCC	GRCh37	1	226564895	226564895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	392	458	0	ENST00000366794.5:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000366794	NM_001618.3	619	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378579	25378579	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	74	437	0	ENST00000256078.4:c.419del	p.Pro140LeufsTer21	p.P140Lfs*21	ENST00000256078	NM_033360.2	140	cCt/ct																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24145605	24145605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	349	652	1	ENST00000263121.7:c.624G>A	p.Met208Ile	p.M208I	ENST00000263121	NM_003073.3	208	atG/atA																																																																														
RHEB	6009	MSKCC	GRCh37	7	151167676	151167676	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	270	324	0	ENST00000262187.5:c.443C>G	p.Ser148Cys	p.S148C	ENST00000262187	NM_005614.3	148	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0050548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	204	621	0	ENST00000269305.4:c.993+2T>G		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539210	187539210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	134	423	0	ENST00000441802.2:c.8530G>C	p.Val2844Leu	p.V2844L	ENST00000441802	NM_005245.3	2844	Gtt/Ctt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	529	781	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609710	28609710	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs202109868		P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	465	836	0	ENST00000241453.7:c.1519A>G	p.Ile507Val	p.I507V	ENST00000241453	NM_004119.2	507	Ata/Gta																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789696	3789696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	188	615	0	ENST00000262367.5:c.4163C>G	p.Ser1388Cys	p.S1388C	ENST00000262367	NM_004380.2	1388	tCt/tGt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205277	38205277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	3810	1112	4	ENST00000317025.8:c.413C>T	p.Ser138Leu	p.S138L	ENST00000317025	NM_023034.1	138	tCg/tTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939531	71939531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	303	884	0	ENST00000298229.2:c.386G>A	p.Arg129Gln	p.R129Q	ENST00000298229	NM_001567.3	129	cGg/cAg																																																																														
CBL	867	MSKCC	GRCh37	11	119148635	119148915	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTCATTGGAACCCATTGACTAGATTAGTGAATTTGTGTGTATGTGGTTTCACTTTAAACCCTGGAGCTTAAAATAGGACCCAGACTAGATGCTTTCTGGTTTAATAAAAAATAAACCACTGTTGTGACATTTTTATATAAGCAAAATTTGTATAGGAAACAAGTCTTCACTTTTTCTGTTAACATTTATAATTGCAGTTATTTATTCAACTAATAGTCTTTTAATTTTTTTTAATCAAAGGAACAATATGAATTATACTGTGAGATGGGCTCCACATTCC	ATTCATTGGAACCCATTGACTAGATTAGTGAATTTGTGTGTATGTGGTTTCACTTTAAACCCTGGAGCTTAAAATAGGACCCAGACTAGATGCTTTCTGGTTTAATAAAAAATAAACCACTGTTGTGACATTTTTATATAAGCAAAATTTGTATAGGAAACAAGTCTTCACTTTTTCTGTTAACATTTATAATTGCAGTTATTTATTCAACTAATAGTCTTTTAATTTTTTTTAATCAAAGGAACAATATGAATTATACTGTGAGATGGGCTCCACATTCC	-			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	44	155	0	ENST00000264033.4:c.1095+82_1136del		p.X365_splice	ENST00000264033	NM_005188.3	365																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788659	3788659	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	173	534	1	ENST00000262367.5:c.4295C>G	p.Ser1432Cys	p.S1432C	ENST00000262367	NM_004380.2	1432	tCt/tGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789702	3789702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	183	592	0	ENST00000262367.5:c.4157C>T	p.Ser1386Phe	p.S1386F	ENST00000262367	NM_004380.2	1386	tCt/tTt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155275	185155275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	720	569	0	ENST00000265026.3:c.516G>T	p.Gln172His	p.Q172H	ENST00000265026	NM_004721.4	172	caG/caT																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800534	32800534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	391	915	2	ENST00000374899.4:c.1013G>T	p.Gly338Val	p.G338V	ENST00000374899	NM_018833.2	338	gGg/gTg																																																																														
CDK6	1021	MSKCC	GRCh37	7	92244563	92244563	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	124	496	0	ENST00000265734.4:c.872C>G	p.Ala291Gly	p.A291G	ENST00000265734	NM_001259.6	291	gCc/gGc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275885	38275885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2530	362	629	1	ENST00000425967.3:c.1384G>T	p.Ala462Ser	p.A462S	ENST00000425967	NM_001174067.1	462	Gct/Tct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624229	89624229	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0050566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	12	190	0	ENST00000371953.3:c.3G>A	p.Met1?	p.M1?	ENST00000371953	NM_000314.4	1	atG/atA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624270	89624270	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	40	439	0	ENST00000371953.3:c.44G>C	p.Arg15Thr	p.R15T	ENST00000371953	NM_000314.4	15	aGa/aCa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653674	89653781	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	ATAGTGGGGAAAACTTTCTTTTCATAACTAGCTAATGTTTTAAAAAGTATTCTTTTAGTTTGATTGCTGCATATTTCAGATATTTCTTTCCTTAACTAAAGTACTCAG	ATAGTGGGGAAAACTTTCTTTTCATAACTAGCTAATGTTTTAAAAAGTATTCTTTTAGTTTGATTGCTGCATATTTCAGATATTTCTTTCCTTAACTAAAGTACTCAG	-			P-0050566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	10	139	0	ENST00000371953.3:c.80-105_82del		p.X27_splice	ENST00000371953	NM_000314.4	27																																																																															
RB1	5925	MSKCC	GRCh37	13	48919281	48919281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	39	246	0	ENST00000267163.4:c.446C>G	p.Ser149Ter	p.S149*	ENST00000267163	NM_000321.2	149	tCa/tGa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566125	95566125	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	33	363	0	ENST00000343455.3:c.4198G>C	p.Asp1400His	p.D1400H	ENST00000343455	NM_177438.2	1400	Gat/Cat																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347179	347179	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	109	691	0	ENST00000262320.3:c.1832C>A	p.Ser611Ter	p.S611*	ENST00000262320	NM_003502.3	611	tCg/tAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786117	3786117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	29	783	0	ENST00000262367.5:c.4648G>C	p.Glu1550Gln	p.E1550Q	ENST00000262367	NM_004380.2	1550	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	740	688	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CASP8	841	MSKCC	GRCh37	2	202136252	202136252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	77	602	0	ENST00000358485.4:c.496C>G	p.Gln166Glu	p.Q166E	ENST00000358485	NM_001080125.1	166	Cag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	385	466	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983016	149983016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	80	690	0	ENST00000253339.5:c.3242G>A	p.Arg1081Gln	p.R1081Q	ENST00000253339		1081	cGa/cAa																																																																														
MET	4233	MSKCC	GRCh37	7	116415027	116415027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	136	642	0	ENST00000397752.3:c.3121G>A	p.Asp1041Asn	p.D1041N	ENST00000397752	NM_000245.2	1041	Gat/Aat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262661	16262661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	197	416	0	ENST00000375759.3:c.9926G>T	p.Gly3309Val	p.G3309V	ENST00000375759	NM_015001.2	3309	gGc/gTc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28605733	28605733	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	256	642	0	ENST00000253063.3:c.1337A>T	p.His446Leu	p.H446L	ENST00000253063	NM_031459.4	446	cAc/cTc																																																																														
SDHC	6391	MSKCC	GRCh37	1	161298233	161298233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	307	481	0	ENST00000367975.2:c.125G>C	p.Trp42Ser	p.W42S	ENST00000367975	NM_003001.3	42	tGg/tCg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195544	102195544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	162	548	0	ENST00000263464.3:c.304G>T	p.Val102Phe	p.V102F	ENST00000263464	NM_001165.4	102	Gtt/Ttt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	143	500	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641068	23641068	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	126	733	1	ENST00000261584.4:c.2407G>T	p.Asp803Tyr	p.D803Y	ENST00000261584	NM_024675.3	803	Gac/Tac																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028689	12028689	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0050568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	114	448	0	ENST00000353533.5:c.891+1G>A		p.X297_splice	ENST00000353533	NM_003010.3	297																																																																															
STK11	6794	MSKCC	GRCh37	19	1221266	1221266	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	444	730	0	ENST00000326873.7:c.789del	p.Leu263PhefsTer24	p.L263Ffs*24	ENST00000326873	NM_000455.4	263	ttG/tt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602334	10602334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	461	660	0	ENST00000171111.5:c.1244G>T	p.Arg415Leu	p.R415L	ENST00000171111	NM_203500.1	415	cGc/cTc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143044483	143044484	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0050568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	75	480	0	ENST00000262992.4:c.1978_1979delinsT	p.Gly660CysfsTer2	p.G660Cfs*2	ENST00000262992	NM_001101669.1	660	GGg/Tg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435639	149435639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	258	649	0	ENST00000286301.3:c.2504A>G	p.Gln835Arg	p.Q835R	ENST00000286301	NM_005211.3	835	cAg/cGg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518172	8518172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	205	518	0	ENST00000356435.5:c.1219C>T	p.Pro407Ser	p.P407S	ENST00000356435		407	Cct/Tct																																																																														
MED12	9968	MSKCC	GRCh37	X	70349204	70349204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	125	717	1	ENST00000374080.3:c.3616C>T	p.His1206Tyr	p.H1206Y	ENST00000374080		1206	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			771	72	1026	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708054	117708054	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	31	338	0	ENST00000368508.3:c.2123C>T	p.Ser708Leu	p.S708L	ENST00000368508	NM_002944.2	708	tCa/tTa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174386	11174386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			743	50	796	0	ENST00000361445.4:c.7289G>T	p.Arg2430Met	p.R2430M	ENST00000361445	NM_004958.3	2430	aGg/aTg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281837	39281837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	26	270	0	ENST00000402219.2:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000402219	NM_005633.3	213	cGa/cAa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798295	45798295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			853	148	995	0	ENST00000372115.3:c.599G>T	p.Gly200Val	p.G200V	ENST00000372115	NM_001048171.1	200	gGc/gTc																																																																														
MET	4233	MSKCC	GRCh37	7	116411902	116411902	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0005873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			737	126	879	0	ENST00000397752.3:c.2888-1G>C		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
JUN	3725	MSKCC	GRCh37	1	59248007	59248007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			906	63	871	0	ENST00000371222.2:c.736G>C	p.Asp246His	p.D246H	ENST00000371222	NM_002228.3	246	Gac/Cac																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969962	81969962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	64	577	0	ENST00000359376.3:c.3031G>T	p.Ala1011Ser	p.A1011S	ENST00000359376	NM_002661.3	1011	Gca/Tca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56434901	56434901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			912	53	1000	1	ENST00000407977.2:c.2236G>A	p.Glu746Lys	p.E746K	ENST00000407977		746	Gaa/Aaa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262283	46262283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	75	473	0	ENST00000371998.3:c.867G>A	p.Met289Ile	p.M289I	ENST00000371998		289	atG/atA																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045021	47045021	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			973	144	1137	0	ENST00000329236.7:c.2113del	p.Leu705SerfsTer19	p.L705Sfs*19	ENST00000329236	NM_001204466.1	705	Ctc/tc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			250	380	769	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115284219	115284219	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			462	279	604	0	ENST00000438362.2:c.67T>G	p.Leu23Val	p.L23V	ENST00000438362	NM_001242891.1	23	Tta/Gta																																																																														
FH	2271	MSKCC	GRCh37	1	241667443	241667443	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			632	243	483	0	ENST00000366560.3:c.1007T>A	p.Met336Lys	p.M336K	ENST00000366560	NM_000143.3	336	aTg/aAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435559	18435559	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			242	138	338	0	ENST00000266497.5:c.544T>C	p.Phe182Leu	p.F182L	ENST00000266497		182	Ttc/Ctc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40353770	40353770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			642	379	732	3	ENST00000293328.3:c.2350C>A	p.His784Asn	p.H784N	ENST00000293328	NM_012448.3	784	Cac/Aac																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39637845	39637845	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0008574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			314	186	444	0	ENST00000262039.4:c.2264-2A>C		p.X755_splice	ENST00000262039	NM_002647.2	755																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248543	212248543	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			648	348	705	0	ENST00000342788.4:c.3724T>A	p.Tyr1242Asn	p.Y1242N	ENST00000342788	NM_005235.2	1242	Tac/Aac																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508244	106508244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			442	272	653	0	ENST00000359195.3:c.238G>C	p.Glu80Gln	p.E80Q	ENST00000359195	NM_002649.2	80	Gag/Cag																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978659	70978660	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0008574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			634	286	729	0	ENST00000276594.2:c.993_994delinsAA	p.Arg332Ser	p.R332S	ENST00000276594	NM_024504.3	331	gcCCgc/gcAAgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019607-T06-IM6									Unknown	SOMATIC				MSK-IMPACT			410	333	698	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64128989	64128989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019607-T06-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	156	870	0	ENST00000334205.4:c.619G>A	p.Glu207Lys	p.E207K	ENST00000334205	NM_003942.2	207	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0019607-T06-IM6									Unknown	SOMATIC				MSK-IMPACT			458	411	674	0	ENST00000397752.3:c.3028+2T>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0030465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	60	350	2	ENST00000371953.3:c.802-2A>T		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0030465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	14	352	0	ENST00000371953.3:c.802-2delA		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
TP53	7157	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0030465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	106	611	0	ENST00000269305.4:c.792_794delACT	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	120	611	0	ENST00000269305.4:c.794T>G	p.Leu265Arg	p.L265R	ENST00000269305	NM_001126112.2	265	cTg/cGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442932	49442932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	151	700	1	ENST00000301067.7:c.3976C>T	p.Arg1326Trp	p.R1326W	ENST00000301067	NM_003482.3	1326	Cgg/Tgg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456452	32456452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	128	726	0	ENST00000332351.3:c.440G>A	p.Gly147Asp	p.G147D	ENST00000332351	NM_024426.4	147	gGc/gAc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696422	47696422	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			493	103	475	0	ENST00000347630.2:c.401A>C	p.Lys134Thr	p.K134T	ENST00000347630	NM_001007230.1	134	aAg/aCg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851767	63851767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031015-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	158	500	0	ENST00000279873.7:c.2545C>T	p.His849Tyr	p.H849Y	ENST00000279873	NM_032199.2	849	Cat/Tat																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217653	7217654	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0031015-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	23	363	0	ENST00000380728.2:c.273_274del	p.Lys92SerfsTer4	p.K92Sfs*4	ENST00000380728		91	aaGAaa/aaaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	236	401	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484261	57484261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			832	65	401	0	ENST00000371085.3:c.575C>T	p.Pro192Leu	p.P192L	ENST00000371085	NM_000516.4	192	cCg/cTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807365	3807365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	154	350	0	ENST00000262367.5:c.3622C>T	p.Pro1208Ser	p.P1208S	ENST00000262367	NM_004380.2	1208	Cca/Tca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725524	117725524	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	79	397	1	ENST00000368508.3:c.357G>A	p.Trp119Ter	p.W119*	ENST00000368508	NM_002944.2	119	tgG/tgA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033249	69033249	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114811202		P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	81	479	0	ENST00000288368.4:c.3689G>A	p.Arg1230Gln	p.R1230Q	ENST00000288368	NM_024870.2	1230	cGg/cAg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18280034	18280034	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs202137312		P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	73	397	0	ENST00000222254.8:c.2117A>G	p.Asp706Gly	p.D706G	ENST00000222254	NM_005027.3	706	gAc/gGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			164	152	288	0				ENST00000310581	NM_198253.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151879061	151879061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	211	485	0	ENST00000262189.6:c.5884C>T	p.Pro1962Ser	p.P1962S	ENST00000262189	NM_170606.2	1962	Ccc/Tcc																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40678643	40678643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	107	491	1	ENST00000249776.8:c.385G>A	p.Gly129Arg	p.G129R	ENST00000249776	NM_033286.3	129	Gga/Aga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81979789	81979789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	76	389	0	ENST00000359376.3:c.3491C>T	p.Ser1164Phe	p.S1164F	ENST00000359376	NM_002661.3	1164	tCc/tTc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696399	47696400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	120	443	0	ENST00000347630.2:c.423dup	p.Leu142SerfsTer4	p.L142Sfs*4	ENST00000347630	NM_001007230.1	141	-/T																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52705287	52705287	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	108	404	1	ENST00000322088.6:c.169G>A	p.Asp57Asn	p.D57N	ENST00000322088	NM_014225.5	57	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306658	41306658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	333	732	1	ENST00000373198.4:c.1001G>T	p.Trp334Leu	p.W334L	ENST00000373198	NM_133170.3	334	tGg/tTg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876232	35876232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	85	475	0	ENST00000303115.3:c.1024G>A	p.Gly342Arg	p.G342R	ENST00000303115	NM_002185.3	342	Ggg/Agg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971147	+	inframe_deletion	In_Frame_Del	DEL	GGGGTCGGCGCAGTT	GGGGTCGGCGCAGTT	-			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	172	489	0	ENST00000304494.5:c.211_225del	p.Asn71_Pro75del	p.N71_P75del	ENST00000304494	NM_000077.4	71	AACTGCGCCGACCCC/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971147	+	inframe_deletion	In_Frame_Del	DEL	GGGGTCGGCGCAGTT	GGGGTCGGCGCAGTT	-			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	172	489	0	ENST00000304494.5:c.211_225del	p.Asn71_Pro75del	p.N71_P75del	ENST00000304494	NM_000077.4	71	AACTGCGCCGACCCC/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971147	+	inframe_deletion	In_Frame_Del	DEL	GGGGTCGGCGCAGTT	GGGGTCGGCGCAGTT	-			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	172	489	0	ENST00000304494.5:c.211_225del	p.Asn71_Pro75del	p.N71_P75del	ENST00000304494	NM_000077.4	71	AACTGCGCCGACCCC/-																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410667	63410667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	231	725	0	ENST00000330258.3:c.2500C>T	p.Leu834Phe	p.L834F	ENST00000330258	NM_152424.3	834	Ctt/Ttt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859845	151859845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	104	305	0	ENST00000262189.6:c.10817G>A	p.Arg3606Lys	p.R3606K	ENST00000262189	NM_170606.2	3606	aGa/aAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922749	44922750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	205	201	0	ENST00000377967.4:c.1611dup	p.Val538SerfsTer15	p.V538Sfs*15	ENST00000377967	NM_021140.2	537	tca/tcAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099449	27099671	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAAGGATCCTTATGGCAGCATGAGGAAAGGTGACTGATCTGATTGCTATTTGAACTTGTGCTCGTAAAGACAGGGCCAGTGAAATGGGGGGAAATCTTGAGAATGGCTCAGGGTTCTTGTGGAGCCATCCTCTGAGATAATGCATTTCCTGCCCTAACTACCCCTCTTCATCCTTACCTCCTTTCTTGTCTTCTCCTTGGCTTCACCTTGTCATCCCTTAAT	ATAAGGATCCTTATGGCAGCATGAGGAAAGGTGACTGATCTGATTGCTATTTGAACTTGTGCTCGTAAAGACAGGGCCAGTGAAATGGGGGGAAATCTTGAGAATGGCTCAGGGTTCTTGTGGAGCCATCCTCTGAGATAATGCATTTCCTGCCCTAACTACCCCTCTTCATCCTTACCTCCTTTCTTGTCTTCTCCTTGGCTTCACCTTGTCATCCCTTAAT	-			P-0043713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	187	536	0	ENST00000324856.7:c.3687_3716-165del		p.X1229_splice	ENST00000324856	NM_006015.4	1229																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440044	49440044	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	346	677	1	ENST00000301067.7:c.4582C>T	p.Arg1528Trp	p.R1528W	ENST00000301067	NM_003482.3	1528	Cgg/Tgg																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26046047	26046056	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	TAAGTCTGCC	TAAGTCTGCC	GA			P-0043713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	149	357	1	ENST00000540144.1:c.409_*7delinsGA		p.*137*	ENST00000540144	NM_003531.2	137																																																																															
RFWD2	0	MSKCC	GRCh37	1	176054993	176054993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046209-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	110	446	0	ENST00000367669.3:c.1060G>C	p.Ala354Pro	p.A354P	ENST00000367669	NM_022457.5	354	Gca/Cca																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78797023	78797023	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0046209-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	87	411	0	ENST00000306801.3:c.1136G>A	p.Trp379Ter	p.W379*	ENST00000306801	NM_020761.2	379	tGg/tAg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626117	12626118	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046209-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	104	336	0	ENST00000251849.4:c.1842_1843insT	p.Lys615Ter	p.K615*	ENST00000251849	NM_002880.3	614	-/T																																																																														
MET	4233	MSKCC	GRCh37	7	116411886	116411896	+	splice_region_variant,intron_variant	Splice_Region	DEL	TTTCTCTCTGT	TTTCTCTCTGT	-			P-0046209-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	1717	595	0	ENST00000397752.3:c.2888-14_2888-4del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040652	47040653	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0046209-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	142	348	0	ENST00000329236.7:c.1053_1054delinsTT	p.Glu351_Glu352delinsAspTer	p.E351_E352delinsD*	ENST00000329236	NM_001204466.1	351	gaGGag/gaTTag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047421-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			322	83	241	0				ENST00000310581	NM_198253.2																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134670597	134670597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047421-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			812	157	760	1	ENST00000398015.3:c.508C>T	p.Arg170Trp	p.R170W	ENST00000398015	NM_004441.4	170	Cgg/Tgg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286812	212286812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047421-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			378	43	428	0	ENST00000342788.4:c.2884G>A	p.Asp962Asn	p.D962N	ENST00000342788	NM_005235.2	962	Gac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056294	27056294	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047421-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			608	183	570	1	ENST00000324856.7:c.1292del	p.Pro431ArgfsTer2	p.P431Rfs*2	ENST00000324856	NM_006015.4	430	taC/ta																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938499	44938505	+	frameshift_variant	Frame_Shift_Del	DEL	GAACAAA	GAACAAA	-			P-0047421-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			202	112	278	0	ENST00000377967.4:c.3050_3056del	p.Thr1017LysfsTer29	p.T1017Kfs*29	ENST00000377967	NM_021140.2	1016	gGAACAAAg/gg																																																																														
ATM	472	MSKCC	GRCh37	11	108123629	108123629	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047421-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			375	40	377	0	ENST00000278616.4:c.1888G>C	p.Val630Leu	p.V630L	ENST00000278616	NM_000051.3	630	Gtg/Ctg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536671	120536671	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047421-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			938	94	707	0	ENST00000229340.5:c.421C>T	p.Gln141Ter	p.Q141*	ENST00000229340	NM_006861.6	141	Cag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			237	213	392	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			281	193	366	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			187	142	462	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920469	134920469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			376	301	574	5	ENST00000398015.3:c.2284G>A	p.Asp762Asn	p.D762N	ENST00000398015	NM_004441.4	762	Gac/Aac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			430	343	716	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			320	310	500	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			128	94	322	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			377	318	567	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			408	335	608	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			152	129	357	15	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
ATRX	546	MSKCC	GRCh37	X	76940012	76940012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			14	217	271	0	ENST00000373344.5:c.736C>T	p.Arg246Cys	p.R246C	ENST00000373344	NM_000489.3	246	Cgc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			271	209	386	9	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32189085	32189085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			341	239	487	3	ENST00000375023.3:c.469C>T	p.Arg157Trp	p.R157W	ENST00000375023	NM_004557.3	157	Cgg/Tgg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			510	268	731	2	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945008	31945008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			468	388	697	2	ENST00000340398.3:c.93delC	p.Ser32LeufsTer5	p.S32Lfs*5	ENST00000340398	NM_001013699.2	31	ccC/cc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930730	32930730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74047012		P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			282	230	460	0	ENST00000380152.3:c.7601C>T	p.Ala2534Val	p.A2534V	ENST00000380152		2534	gCg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			412	289	655	4	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18280036	18280036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			282	246	345	2	ENST00000222254.8:c.2119G>A	p.Ala707Thr	p.A707T	ENST00000222254	NM_005027.3	707	Gcg/Acg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968144	18968144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			358	341	667	0	ENST00000262803.5:c.1984G>A	p.Asp662Asn	p.D662N	ENST00000262803	NM_002911.3	662	Gac/Aac																																																																														
MGA	23269	MSKCC	GRCh37	15	42042709	42042711	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			211	128	475	1	ENST00000219905.7:c.6909_6911del	p.Glu2303del	p.E2303del	ENST00000219905	NM_001164273.1	2302	GAA/-																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733022	74733022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			382	330	497	2	ENST00000359995.5:c.221C>T	p.Ala74Val	p.A74V	ENST00000359995	NM_001195427.1	74	gCc/gTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2120557	2120557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			494	412	773	0	ENST00000219476.3:c.1817T>C	p.Ile606Thr	p.I606T	ENST00000219476	NM_000548.3	606	aTc/aCc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222816	5222816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			415	355	606	0	ENST00000357368.4:c.2987C>T	p.Thr996Met	p.T996M	ENST00000357368	NM_002850.3	996	aCg/aTg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169036	32169036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			663	51	672	1	ENST00000375023.3:c.3997C>T	p.Arg1333Cys	p.R1333C	ENST00000375023	NM_004557.3	1333	Cgt/Tgt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677912	117677912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			344	33	416	0	ENST00000368508.3:c.4021G>A	p.Ala1341Thr	p.A1341T	ENST00000368508	NM_002944.2	1341	Gct/Act																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856274	111856274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			65	95	50	2	ENST00000341259.2:c.325G>A	p.Gly109Ser	p.G109S	ENST00000341259	NM_005475.2	109	Ggc/Agc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574584	41574584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			536	358	643	2	ENST00000263253.7:c.6869A>G	p.Gln2290Arg	p.Q2290R	ENST00000263253	NM_001429.3	2290	cAg/cGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023765	27023765	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			223	130	281	2	ENST00000324856.7:c.871G>C	p.Ala291Pro	p.A291P	ENST00000324856	NM_006015.4	291	Gcc/Ccc																																																																														
MPL	4352	MSKCC	GRCh37	1	43803902	43803902	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			310	311	462	0	ENST00000372470.3:c.212G>A	p.Arg71Gln	p.R71Q	ENST00000372470	NM_005373.2	71	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438235	49438236	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			430	326	548	1	ENST00000301067.7:c.5033_5034del	p.Lys1678ArgfsTer12	p.K1678Rfs*12	ENST00000301067	NM_003482.3	1678	aAA/a																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17384783	17384783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			398	317	608	2	ENST00000359435.4:c.415G>A	p.Asp139Asn	p.D139N	ENST00000359435	NM_001033549.1	139	Gac/Aac																																																																														
INHA	3623	MSKCC	GRCh37	2	220439680	220439680	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			442	338	859	0	ENST00000243786.2:c.533T>C	p.Val178Ala	p.V178A	ENST00000243786	NM_002191.3	178	gTg/gCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542762	187542762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			186	154	479	0	ENST00000441802.2:c.4978G>A	p.Ala1660Thr	p.A1660T	ENST00000441802	NM_005245.3	1660	Gct/Act																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402523	20402523	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			338	331	396	2	ENST00000346618.3:c.64del	p.Ala22ArgfsTer18	p.A22Rfs*18	ENST00000346618	NM_001949.4	20	gaG/ga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729357	41729357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			347	253	570	1	ENST00000242208.4:c.1172G>A	p.Cys391Tyr	p.C391Y	ENST00000242208	NM_002192.2	391	tGt/tAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8525033	8525033	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047668-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			154	154	324	0	ENST00000356435.5:c.571G>A	p.Ala191Thr	p.A191T	ENST00000356435		191	Gcc/Acc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0048333-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	92	334	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0048333-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	88	321	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048333-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	157	401	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048333-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	151	432	1	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc																																																																														
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049080-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	143	557	1	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049080-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	39	434	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
EP300	2033	MSKCC	GRCh37	22	41572857	41572858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGA			P-0049080-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	22	530	0	ENST00000263253.7:c.5144_5147dup	p.Ser1716ArgfsTer168	p.S1716Rfs*168	ENST00000263253	NM_001429.3	1714	-/GAGA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418727	49418727	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0049080-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	28	355	0	ENST00000301067.7:c.15787del	p.Val5263CysfsTer12	p.V5263Cfs*12	ENST00000301067	NM_003482.3	5263	Gtg/tg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			95	107	470	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0049304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	204	698	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	234	707	0	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																														
CALR	811	MSKCC	GRCh37	19	13054620	13054620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	148	498	0	ENST00000316448.5:c.1147G>A	p.Glu383Lys	p.E383K	ENST00000316448	NM_004343.3	383	Gag/Aag																																																																														
EED	8726	MSKCC	GRCh37	11	85977233	85977233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			66	11	270	0	ENST00000263360.6:c.835G>C	p.Asp279His	p.D279H	ENST00000263360	NM_003797.3	279	Gat/Cat																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622490	158622490	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			172	66	399	0	ENST00000263640.3:c.1009T>A	p.Leu337Ile	p.L337I	ENST00000263640	NM_001105.4	337	Tta/Ata																																																																														
APC	324	MSKCC	GRCh37	5	112176947	112176947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			127	14	293	0	ENST00000257430.4:c.5656G>C	p.Glu1886Gln	p.E1886Q	ENST00000257430	NM_000038.5	1886	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	173	687	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	124	934	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974677	21974677	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	105	689	0	ENST00000304494.5:c.150G>T	p.Gln50His	p.Q50H	ENST00000304494	NM_000077.4	50	caG/caT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974677	21974677	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	105	689	0	ENST00000304494.5:c.150G>T	p.Gln50His	p.Q50H	ENST00000304494	NM_000077.4	50	caG/caT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528612	8528612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	52	479	0	ENST00000356435.5:c.520C>T	p.Arg174Cys	p.R174C	ENST00000356435		174	Cgt/Tgt																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427690	72427690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	83	438	1	ENST00000477973.2:c.798G>T	p.Arg267Leu	p.R267L	ENST00000477973	NM_012234.5	267	cGc/cTc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94219187	94219187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	58	512	0	ENST00000323929.3:c.217C>T	p.His73Tyr	p.H73Y	ENST00000323929	NM_005591.3	73	Cat/Tat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15311604	15311605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	61	311	0	ENST00000263388.2:c.112dup	p.Ala38GlyfsTer37	p.A38Gfs*37	ENST00000263388	NM_000435.2	38	gct/gGct																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435493	110435493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	61	739	0	ENST00000375856.3:c.2908C>T	p.Arg970Trp	p.R970W	ENST00000375856	NM_003749.2	970	Cgg/Tgg																																																																														
MGA	23269	MSKCC	GRCh37	15	42046674	42046674	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	77	499	0	ENST00000219905.7:c.7048G>T	p.Val2350Leu	p.V2350L	ENST00000219905	NM_001164273.1	2350	Gtg/Ttg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248708	212248708	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	50	445	0	ENST00000342788.4:c.3559G>T	p.Glu1187Ter	p.E1187*	ENST00000342788	NM_005235.2	1187	Gaa/Taa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420273	88420273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	70	542	0	ENST00000360948.2:c.2413G>T	p.Gly805Trp	p.G805W	ENST00000360948	NM_001012338.2	805	Ggg/Tgg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448542	89448542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	51	491	0	ENST00000336596.2:c.1506C>A	p.Asp502Glu	p.D502E	ENST00000336596	NM_005233.5	502	gaC/gaA																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727424	66727424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	95	478	0	ENST00000307102.5:c.140G>T	p.Arg47Leu	p.R47L	ENST00000307102	NM_002755.3	47	cGa/cTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483921	88483921	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	81	753	0	ENST00000360948.2:c.1649del	p.Gly550GlufsTer22	p.G550Efs*22	ENST00000360948	NM_001012338.2	550	gGa/ga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251954	153251954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	22	511	0	ENST00000281708.4:c.1052G>T	p.Trp351Leu	p.W351L	ENST00000281708	NM_033632.3	351	tGg/tTg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176153781	176153781	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	35	443	0	ENST00000367669.3:c.455G>C	p.Gly152Ala	p.G152A	ENST00000367669	NM_022457.5	152	gGc/gCc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206661275	206661275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	46	790	0	ENST00000367120.3:c.1641G>T	p.Leu547Phe	p.L547F	ENST00000367120	NM_014002.3	547	ttG/ttT																																																																														
RET	5979	MSKCC	GRCh37	10	43601894	43601894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	74	890	3	ENST00000355710.3:c.938G>T	p.Arg313Leu	p.R313L	ENST00000355710	NM_020975.4	313	cGg/cTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70412331	70412331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	57	339	0	ENST00000373644.4:c.4441G>C	p.Gly1481Arg	p.G1481R	ENST00000373644	NM_030625.2	1481	Ggg/Cgg																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724594	112724594	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	35	562	0	ENST00000369452.4:c.478A>T	p.Ser160Cys	p.S160C	ENST00000369452	NM_007373.3	160	Agt/Tgt																																																																														
CCND2	894	MSKCC	GRCh37	12	4388030	4388030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	134	537	0	ENST00000261254.3:c.516G>T	p.Glu172Asp	p.E172D	ENST00000261254	NM_001759.3	172	gaG/gaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445113	49445113	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	30	806	0	ENST00000301067.7:c.2353G>C	p.Glu785Gln	p.E785Q	ENST00000301067	NM_003482.3	785	Gag/Cag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877366	28877366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	53	587	0	ENST00000282397.4:c.3955G>C	p.Ala1319Pro	p.A1319P	ENST00000282397	NM_002019.4	1319	Gcg/Ccg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29002026	29002026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	34	393	0	ENST00000282397.4:c.1139C>A	p.Ser380Tyr	p.S380Y	ENST00000282397	NM_002019.4	380	tCt/tAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892276	9892276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	33	539	0	ENST00000330684.3:c.2214G>T	p.Lys738Asn	p.K738N	ENST00000330684	NM_001134407.1	738	aaG/aaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993712	72993712	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	54	793	0	ENST00000268489.5:c.333G>C	p.Glu111Asp	p.E111D	ENST00000268489	NM_006885.3	111	gaG/gaC																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7976226	7976226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	81	760	0	ENST00000319144.4:c.1969G>T	p.Ala657Ser	p.A657S	ENST00000319144	NM_001139.2	657	Gcc/Tcc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59876593	59876593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	51	510	0	ENST00000259008.2:c.1208G>C	p.Arg403Pro	p.R403P	ENST00000259008	NM_032043.2	403	cGg/cCg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885991	59885991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	51	581	0	ENST00000259008.2:c.755C>T	p.Thr252Ile	p.T252I	ENST00000259008	NM_032043.2	252	aCa/aTa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353835	15353835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	55	377	0	ENST00000263377.2:c.3045G>T	p.Gln1015His	p.Q1015H	ENST00000263377	NM_058243.2	1015	caG/caT																																																																														
CIC	23152	MSKCC	GRCh37	19	42796531	42796531	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	129	1131	1	ENST00000575354.2:c.3088A>T	p.Thr1030Ser	p.T1030S	ENST00000575354	NM_015125.3	1030	Acc/Tcc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25497913	25497913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	58	845	0	ENST00000264709.3:c.536G>A	p.Ser179Asn	p.S179N	ENST00000264709	NM_175629.2	179	aGc/aAc																																																																														
ALK	238	MSKCC	GRCh37	2	29754868	29754868	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	82	601	0	ENST00000389048.3:c.1067A>T	p.Gln356Leu	p.Q356L	ENST00000389048	NM_004304.4	356	cAg/cTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248555	212248555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	36	625	0	ENST00000342788.4:c.3712G>T	p.Asp1238Tyr	p.D1238Y	ENST00000342788	NM_005235.2	1238	Gac/Tac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251686	212251686	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	44	485	0	ENST00000342788.4:c.3373A>T	p.Thr1125Ser	p.T1125S	ENST00000342788	NM_005235.2	1125	Acc/Tcc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295744	212295744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	81	587	1	ENST00000342788.4:c.2569G>T	p.Val857Leu	p.V857L	ENST00000342788	NM_005235.2	857	Gtg/Ttg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989504	212989504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	68	394	0	ENST00000342788.4:c.207G>T	p.Glu69Asp	p.E69D	ENST00000342788	NM_005235.2	69	gaG/gaT																																																																														
PAK7	0	MSKCC	GRCh37	20	9561440	9561440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	32	550	0	ENST00000353224.5:c.342C>A	p.Ser114Arg	p.S114R	ENST00000353224	NM_177990.2	114	agC/agA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748598	40748598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	70	450	0	ENST00000373198.4:c.2918C>T	p.Pro973Leu	p.P973L	ENST00000373198	NM_133170.3	973	cCt/cTt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46276031	46276031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	85	557	0	ENST00000371998.3:c.3467G>T	p.Arg1156Leu	p.R1156L	ENST00000371998		1156	cGa/cTa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713909	30713909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	64	597	0	ENST00000359013.4:c.1309G>T	p.Asp437Tyr	p.D437Y	ENST00000359013	NM_001024847.2	437	Gac/Tac																																																																														
MITF	4286	MSKCC	GRCh37	3	69998201	69998201	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	64	396	0	ENST00000352241.4:c.763-1G>C		p.X255_splice	ENST00000352241	NM_198159.2	255																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851562	134851562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	58	554	0	ENST00000398015.3:c.968C>G	p.Pro323Arg	p.P323R	ENST00000398015	NM_004441.4	323	cCa/cGa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133615	55133615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	46	488	0	ENST00000257290.5:c.919A>G	p.Ile307Val	p.I307V	ENST00000257290	NM_006206.4	307	Att/Gtt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156535	55156535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	60	653	1	ENST00000257290.5:c.2936G>T	p.Arg979Leu	p.R979L	ENST00000257290	NM_006206.4	979	cGc/cTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106155771	106155771	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	27	442	0	ENST00000380013.4:c.672A>T	p.Glu224Asp	p.E224D	ENST00000380013	NM_001127208.2	224	gaA/gaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539114	187539114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	51	505	0	ENST00000441802.2:c.8626G>A	p.Asp2876Asn	p.D2876N	ENST00000441802	NM_005245.3	2876	Gac/Aac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584750	187584750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	41	322	0	ENST00000441802.2:c.3283G>T	p.Asp1095Tyr	p.D1095Y	ENST00000441802	NM_005245.3	1095	Gat/Tat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629885	187629885	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	57	718	0	ENST00000441802.2:c.1097A>T	p.Lys366Met	p.K366M	ENST00000441802	NM_005245.3	366	aAg/aTg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522329	176522329	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	96	637	0	ENST00000292408.4:c.1520-2A>T		p.X507_splice	ENST00000292408	NM_213647.1	507																																																																															
HIST1H3E	8353	MSKCC	GRCh37	6	26225581	26225581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	100	792	0	ENST00000360408.1:c.199C>A	p.Pro67Thr	p.P67T	ENST00000360408	NM_003532.2	67	Ccg/Acg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187453	32187453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	124	898	0	ENST00000375023.3:c.1426C>A	p.His476Asn	p.H476N	ENST00000375023	NM_004557.3	476	Cac/Aac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188578	32188578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	75	895	0	ENST00000375023.3:c.877G>T	p.Asp293Tyr	p.D293Y	ENST00000375023	NM_004557.3	293	Gat/Tat																																																																														
FYN	2534	MSKCC	GRCh37	6	112017516	112017516	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	47	398	0	ENST00000368678.4:c.997G>T	p.Glu333Ter	p.E333*	ENST00000368678		333	Gag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677917	117677917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	70	428	0	ENST00000368508.3:c.4016C>T	p.Ala1339Val	p.A1339V	ENST00000368508	NM_002944.2	1339	gCa/gTa																																																																														
HGF	3082	MSKCC	GRCh37	7	81381534	81381534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	40	315	0	ENST00000222390.5:c.527A>G	p.Tyr176Cys	p.Y176C	ENST00000222390	NM_000601.4	176	tAc/tGc																																																																														
HGF	3082	MSKCC	GRCh37	7	81381577	81381577	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	28	226	0	ENST00000222390.5:c.484T>G	p.Phe162Val	p.F162V	ENST00000222390	NM_000601.4	162	Ttt/Gtt																																																																														
HGF	3082	MSKCC	GRCh37	7	81388078	81388078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	38	435	0	ENST00000222390.5:c.297C>A	p.Phe99Leu	p.F99L	ENST00000222390	NM_000601.4	99	ttC/ttA																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523596	148523596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	44	289	0	ENST00000320356.2:c.857G>C	p.Cys286Ser	p.C286S	ENST00000320356	NM_004456.4	286	tGt/tCt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956805	68956805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	40	642	0	ENST00000288368.4:c.923A>G	p.Glu308Gly	p.E308G	ENST00000288368	NM_024870.2	308	gAg/gGg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636715	8636715	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	41	331	0	ENST00000356435.5:c.194G>C	p.Ser65Thr	p.S65T	ENST00000356435		65	aGc/aCc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87339164	87339164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	37	422	0	ENST00000277120.3:c.746C>A	p.Ser249Tyr	p.S249Y	ENST00000277120		249	tCc/tAc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128201269	128201269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	61	762	0	ENST00000265960.3:c.1466G>T	p.Arg489Leu	p.R489L	ENST00000265960	NM_001006617.1	489	cGa/cTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399852	139399852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			492	109	1101	0	ENST00000277541.6:c.4496A>G	p.Tyr1499Cys	p.Y1499C	ENST00000277541	NM_017617.3	1499	tAc/tGc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152853832	152853832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			29	26	59	1	ENST00000406277.2:c.732G>T	p.Glu244Asp	p.E244D	ENST00000406277	NM_152274.4	244	gaG/gaT																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562517	21562519	+	missense_variant	Missense_Mutation	ONP	CGG	CGG	AGC			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			52	11	79	0	ENST00000382592.4:c.1400_1402delinsGCT	p.Pro467_Ala468delinsArgSer	p.P467_A468delinsRS	ENST00000382592	NM_014572.2	467	cCCGcg/cGCTcg																																																																														
STK40	83931	MSKCC	GRCh37	1	36807432	36807434	+	missense_variant	Missense_Mutation	ONP	CGC	CGC	AGA			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	57	914	0	ENST00000373129.3:c.1230_1232delinsTCT	p.Arg411Leu	p.R411L	ENST00000373129	NM_032017.1	410	gtGCGa/gtTCTa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158636926	158636927	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0049308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	26	527	0	ENST00000263640.3:c.253_254delinsT	p.Pro85CysfsTer47	p.P85Cfs*47	ENST00000263640	NM_001105.4	85	CCg/Tg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522623	176522623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	35	656	0	ENST00000292408.4:c.1720C>T	p.Pro574Ser	p.P574S	ENST00000292408	NM_213647.1	574	Ccc/Tcc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68292250	68292250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	268	311	0	ENST00000487270.1:c.154C>G	p.Leu52Val	p.L52V	ENST00000487270	NM_133509.3	52	Ctt/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578459	7578460	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	455	637	0	ENST00000269305.4:c.470_471insG	p.Arg158ProfsTer23	p.R158Pfs*23	ENST00000269305	NM_001126112.2	157	gtc/gtGc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957776	1957776	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	47	439	0	ENST00000382891.5:c.2742G>C	p.Glu914Asp	p.E914D	ENST00000382891	NM_133335.3	914	gaG/gaC																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467712	66467712	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	206	256	0	ENST00000273854.3:c.557T>C	p.Leu186Pro	p.L186P	ENST00000273854	NM_004439.5	186	cTt/cCt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	104	321	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	61	205	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	68	224	0	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	102	357	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993708	72993708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62640010		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	130	565	0	ENST00000268489.5:c.337G>A	p.Ala113Thr	p.A113T	ENST00000268489	NM_006885.3	113	Gcc/Acc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467637	50467637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	75	370	0	ENST00000331340.3:c.872C>T	p.Thr291Met	p.T291M	ENST00000331340	NM_006060.4	291	aCg/aTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	99	377	4	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	153	643	3	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655381	67655381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	111	381	0	ENST00000264010.4:c.1244G>A	p.Arg415Gln	p.R415Q	ENST00000264010	NM_006565.3	415	cGg/cAg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	55	155	1	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44870231	44870231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	68	275	0	ENST00000377967.4:c.410G>T	p.Gly137Val	p.G137V	ENST00000377967	NM_021140.2	137	gGt/gTt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	97	329	2	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	119	375	3	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	162	734	1	ENST00000344626.4:c.810delC	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	118	469	0	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270529	98270530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778175153		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	74	282	0	ENST00000331920.6:c.114dup	p.Leu39AlafsTer51	p.L39Afs*51	ENST00000331920	NM_000264.3	38	-/G																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019143	31019144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	113	350	0	ENST00000375687.4:c.742dup	p.Glu248GlyfsTer6	p.E248Gfs*6	ENST00000375687	NM_015338.5	246	-/G																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	220	707	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	148	542	3	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	136	591	1	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658481	3658481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140876043		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	142	445	0	ENST00000294008.3:c.485C>T	p.Thr162Met	p.T162M	ENST00000294008	NM_032444.2	162	aCg/aTg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131409	17131409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	179	603	2	ENST00000285071.4:c.43G>T	p.Gly15Cys	p.G15C	ENST00000285071	NM_144997.5	15	Ggc/Tgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89352560	89352560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	141	496	0	ENST00000301030.4:c.779C>T	p.Pro260Leu	p.P260L	ENST00000301030	NM_001256183.1	260	cCg/cTg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47685282	47685282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	81	285	0	ENST00000347630.2:c.668C>T	p.Pro223Leu	p.P223L	ENST00000347630	NM_001007230.1	223	cCg/cTg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688707	47688707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	143	346	0	ENST00000347630.2:c.593G>A	p.Arg198Gln	p.R198Q	ENST00000347630	NM_001007230.1	198	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448526	49448526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371342351		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	106	477	0	ENST00000301067.7:c.185C>T	p.Pro62Leu	p.P62L	ENST00000301067	NM_003482.3	62	cCg/cTg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814798	139814798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201857326		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	149	577	0	ENST00000247668.2:c.791C>T	p.Ala264Val	p.A264V	ENST00000247668	NM_021138.3	264	gCg/gTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332463	153332463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	85	203	0	ENST00000281708.4:c.493del	p.Thr165GlnfsTer4	p.T165Qfs*4	ENST00000281708	NM_033632.3	165	Aca/ca																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967285	25967285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	113	319	0	ENST00000435504.4:c.1921C>T	p.Arg641Cys	p.R641C	ENST00000435504		641	Cgt/Tgt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781167	135781167	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	43	502	0	ENST00000298552.3:c.1798C>T	p.Gln600Ter	p.Q600*	ENST00000298552	NM_001162426.1	600	Cag/Tag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941889	71941889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	160	580	0	ENST00000298229.2:c.1247C>A	p.Ser416Tyr	p.S416Y	ENST00000298229	NM_001567.3	416	tCc/tAc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748317	43748317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	131	467	0	ENST00000382044.4:c.2489C>A	p.Pro830His	p.P830H	ENST00000382044	NM_001141980.1	830	cCt/cAt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40354455	40354455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	132	645	0	ENST00000293328.3:c.2140G>A	p.Ala714Thr	p.A714T	ENST00000293328	NM_012448.3	714	Gca/Aca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492743	56492743	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	319	473	0	ENST00000407977.2:c.196del	p.Glu66LysfsTer10	p.E66Kfs*10	ENST00000407977		66	Gaa/aa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955121	17955122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	159	669	0	ENST00000458235.1:c.105dup	p.Gly36ArgfsTer16	p.G36Rfs*16	ENST00000458235	NM_000215.3	35	-/C																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271878	18271878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	158	562	1	ENST00000222254.8:c.481G>A	p.Asp161Asn	p.D161N	ENST00000222254	NM_005027.3	161	Gac/Aac																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643393	52643393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	122	279	0	ENST00000394830.3:c.2503C>T	p.Arg835Cys	p.R835C	ENST00000394830	NM_018313.4	835	Cgt/Tgt																																																																														
BCL6	604	MSKCC	GRCh37	3	187446152	187446152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	135	470	1	ENST00000232014.4:c.1536C>A	p.Ser512Arg	p.S512R	ENST00000232014	NM_001130845.1	512	agC/agA																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143044528	143044528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	95	329	0	ENST00000262992.4:c.1934C>T	p.Thr645Ile	p.T645I	ENST00000262992	NM_001101669.1	645	aCa/aTa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685285	86685285	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	82	194	0	ENST00000274376.6:c.3001A>T	p.Ile1001Phe	p.I1001F	ENST00000274376	NM_002890.2	1001	Att/Ttt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056527	26056527	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200279816		P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	21	298	0	ENST00000343677.2:c.130A>G	p.Ile44Val	p.I44V	ENST00000343677	NM_005319.3	44	Atc/Gtc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170103	32170103	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	117	685	0	ENST00000375023.3:c.3505del	p.Arg1169GlyfsTer135	p.R1169Gfs*135	ENST00000375023	NM_004557.3	1169	Cgg/gg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803531	32803531	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	157	569	0	ENST00000374899.4:c.628C>T	p.Arg210Ter	p.R210*	ENST00000374899	NM_018833.2	210	Cga/Tga																																																																														
FYN	2534	MSKCC	GRCh37	6	112017549	112017549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	114	310	0	ENST00000368678.4:c.964A>G	p.Lys322Glu	p.K322E	ENST00000368678		322	Aag/Gag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864657	68864657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	69	257	1	ENST00000288368.4:c.28C>T	p.Arg10Cys	p.R10C	ENST00000288368	NM_024870.2	10	Cgc/Tgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923181	39923181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	105	374	0	ENST00000378444.4:c.3527C>T	p.Thr1176Ile	p.T1176I	ENST00000378444	NM_001123385.1	1176	aCa/aTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	28	316	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0049364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	34	435	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0049364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	26	353	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	68	866	1	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	43	807	1	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448323	56448323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	103	807	1	ENST00000407977.2:c.324G>T	p.Lys108Asn	p.K108N	ENST00000407977		108	aaG/aaT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453990	140453990	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	12	183	0	ENST00000288602.6:c.1738A>G	p.Asn580Asp	p.N580D	ENST00000288602	NM_004333.4	580	Aat/Gat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049650-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	440	904	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
RB1	5925	MSKCC	GRCh37	13	49033844	49033844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049650-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	67	474	1	ENST00000267163.4:c.1981C>T	p.Arg661Trp	p.R661W	ENST00000267163	NM_000321.2	661	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0049650-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			738	2451	577	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321140	62321140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049650-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			908	484	1000	0	ENST00000508582.2:c.2135C>T	p.Ser712Phe	p.S712F	ENST00000508582		712	tCc/tTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98248124	98248124	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049650-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	241	486	0	ENST00000331920.6:c.427A>C	p.Thr143Pro	p.T143P	ENST00000331920	NM_000264.3	143	Act/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577145	7577150	+	inframe_deletion	In_Frame_Del	DEL	GTAGAT	GTAGAT	-			P-0049912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	112	512	0	ENST00000269305.4:c.788_793del	p.Asn263_Leu265delinsMet	p.N263_L265delinsM	ENST00000269305	NM_001126112.2	263	aATCTACtg/atg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37667870	37667870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	128	413	0	ENST00000447079.4:c.2755G>T	p.Val919Phe	p.V919F	ENST00000447079	NM_015083.1	919	Gtt/Ttt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59857674	59857674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	17	356	0	ENST00000259008.2:c.1883G>T	p.Gly628Val	p.G628V	ENST00000259008	NM_032043.2	628	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112174826	112174827	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0049912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	20	272	0	ENST00000257430.4:c.3537_3538del	p.Tyr1179Ter	p.Y1179*	ENST00000257430	NM_000038.5	1179	TAt/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	74	926	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	24	337	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101186	27101186	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	61	882	1	ENST00000324856.7:c.4468G>T	p.Glu1490Ter	p.E1490*	ENST00000324856	NM_006015.4	1490	Gag/Tag																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482868	67482888	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GTCTTAGAGACATCAAGTATG	GTCTTAGAGACATCAAGTATG	-			P-0049913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	35	584	1	ENST00000327367.4:c.1274_*16del		p.*425*	ENST00000327367	NM_005902.3	424																																																																															
RB1	5925	MSKCC	GRCh37	13	48878127	48878127	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1276653645		P-0049914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	130	224	0	ENST00000267163.4:c.83del	p.Pro28LeufsTer37	p.P28Lfs*37	ENST00000267163	NM_000321.2	27	Ccc/cc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163587	32163587	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	54	649	0	ENST00000375023.3:c.5639G>C	p.Arg1880Pro	p.R1880P	ENST00000375023	NM_004557.3	1880	cGg/cCg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522604	106522604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	244	485	0	ENST00000359195.3:c.2581G>T	p.Asp861Tyr	p.D861Y	ENST00000359195	NM_002649.2	861	Gat/Tat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544135	18544135	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	219	465	1	ENST00000266497.5:c.1952A>T	p.Lys651Met	p.K651M	ENST00000266497		651	aAg/aTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888160	81888160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	418	515	0	ENST00000359376.3:c.305C>A	p.Thr102Asn	p.T102N	ENST00000359376	NM_002661.3	102	aCt/aAt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38148166	38148166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	185	518	0	ENST00000317025.8:c.2945G>A	p.Arg982Lys	p.R982K	ENST00000317025	NM_023034.1	982	aGg/aAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412978	63412978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	67	819	0	ENST00000330258.3:c.189G>T	p.Lys63Asn	p.K63N	ENST00000330258	NM_152424.3	63	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76938705	76938705	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0049914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	59	636	2	ENST00000373344.5:c.2043T>A	p.Cys681Ter	p.C681*	ENST00000373344	NM_000489.3	681	tgT/tgA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	49	626	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	31	466	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	72	744	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034471	47034471	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	35	399	0	ENST00000329236.7:c.325C>T	p.Arg109Ter	p.R109*	ENST00000329236	NM_001204466.1	109	Cga/Tga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	102	865	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873782	151873782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0049916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	38	541	0	ENST00000262189.6:c.8756C>G	p.Ser2919Ter	p.S2919*	ENST00000262189	NM_170606.2	2919	tCa/tGa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966768	44966768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	29	295	0	ENST00000377967.4:c.3992G>A	p.Cys1331Tyr	p.C1331Y	ENST00000377967	NM_021140.2	1331	tGt/tAt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15984016	15984016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	37	382	0	ENST00000268712.3:c.3203C>T	p.Ser1068Phe	p.S1068F	ENST00000268712	NM_006311.3	1068	tCt/tTt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59926543	59926543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	49	701	0	ENST00000259008.2:c.454G>A	p.Asp152Asn	p.D152N	ENST00000259008	NM_032043.2	152	Gat/Aat																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169993035	169993035	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0049916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	39	250	0	ENST00000295797.4:c.665C>G	p.Ser222Ter	p.S222*	ENST00000295797	NM_002740.5	222	tCa/tGa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201834	152201834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	27	430	0	ENST00000206249.3:c.688G>A	p.Asp230Asn	p.D230N	ENST00000206249	NM_000125.3	230	Gat/Aat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054832	5054832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	41	386	0	ENST00000381652.3:c.884G>A	p.Gly295Glu	p.G295E	ENST00000381652	NM_004972.3	295	gGa/gAa																																																																														
CD274	29126	MSKCC	GRCh37	9	5465525	5465525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	25	264	0	ENST00000381577.3:c.709G>C	p.Glu237Gln	p.E237Q	ENST00000381577	NM_014143.3	237	Gaa/Caa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480459	89480459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	92	388	1	ENST00000336596.2:c.2296G>A	p.Gly766Arg	p.G766R	ENST00000336596	NM_005233.5	766	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	124	263	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119875	70119875	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	209	669	0	ENST00000245479.2:c.877G>T	p.Glu293Ter	p.E293*	ENST00000245479	NM_000346.3	293	Gag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29670155	29670155	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0049919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	80	314	0	ENST00000358273.4:c.7189+2T>C		p.X2397_splice	ENST00000358273	NM_001042492.2	2397																																																																															
TP53	7157	MSKCC	GRCh37	17	7577152	7577167	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCACTACTCAGGATA	ACCACTACTCAGGATA	TCT			P-0049919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	127	512	2	ENST00000269305.4:c.783-12_786delinsAGA		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	275	638	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832811	3832811	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	368	636	1	ENST00000262367.5:c.1447C>T	p.Arg483Ter	p.R483*	ENST00000262367	NM_004380.2	483	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11186838	11186838	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	53	405	0	ENST00000361445.4:c.6367C>G	p.Leu2123Val	p.L2123V	ENST00000361445	NM_004958.3	2123	Ctg/Gtg																																																																														
RET	5979	MSKCC	GRCh37	10	43609988	43609988	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	134	832	0	ENST00000355710.3:c.1940T>A	p.Ile647Asn	p.I647N	ENST00000355710	NM_020975.4	647	aTc/aAc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434611	99434611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	204	587	1	ENST00000268035.6:c.698C>T	p.Pro233Leu	p.P233L	ENST00000268035	NM_000875.3	233	cCc/cTc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46609730	46609730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	80	675	0	ENST00000263734.3:c.2454G>T	p.Lys818Asn	p.K818N	ENST00000263734	NM_001430.4	818	aaG/aaT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675490	30675879	+	inframe_deletion	In_Frame_Del	DEL	GGCTCCCTCCCTCTGGCTCCCCTCTCTGTGTATCTCTCTCCAGGATCACTTTGGGCACCTTCTCTTCTAACTCGGCTGGATCGCACTCTCTGTTTGCTACTGGTCTCTCTACTTCTCTCTCAAATGCTTTGCTTGGAAGGGTCTGCTTCTGTACTTGTTTCTCTTGTATTTCCTCAGATGTCTCAATTTCTACCTTCAAACTCTCCCTATCTCTTTCAGGACTTGCACTTTCCCCATTTTTGTCAGATTCTTGTCTCTGGGTGTCTCTAGCTAACAACTGTTTTTGTTCTCTGTCCTGTTTCCCCTTGGTTAATTCTTCCTCTCCTGTCACATCTGTCTGTCTTTCTGGTAGCAGTTTCTCAGTTTCTCTCTCCAATGGCCCTCTCTCAG	GGCTCCCTCCCTCTGGCTCCCCTCTCTGTGTATCTCTCTCCAGGATCACTTTGGGCACCTTCTCTTCTAACTCGGCTGGATCGCACTCTCTGTTTGCTACTGGTCTCTCTACTTCTCTCTCAAATGCTTTGCTTGGAAGGGTCTGCTTCTGTACTTGTTTCTCTTGTATTTCCTCAGATGTCTCAATTTCTACCTTCAAACTCTCCCTATCTCTTTCAGGACTTGCACTTTCCCCATTTTTGTCAGATTCTTGTCTCTGGGTGTCTCTAGCTAACAACTGTTTTTGTTCTCTGTCCTGTTTCCCCTTGGTTAATTCTTCCTCTCCTGTCACATCTGTCTGTCTTTCTGGTAGCAGTTTCTCAGTTTCTCTCTCCAATGGCCCTCTCTCAG	-			P-0049921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	92	759	0	ENST00000376406.3:c.2477_2866del	p.Pro826_Ser955del	p.P826_S955del	ENST00000376406	NM_014641.2	826	cCTGAGAGAGGGCCATTGGAGAGAGAAACTGAGAAACTGCTACCAGAAAGACAGACAGATGTGACAGGAGAGGAAGAATTAACCAAGGGGAAACAGGACAGAGAACAAAAACAGTTGTTAGCTAGAGACACCCAGAGACAAGAATCTGACAAAAATGGGGAAAGTGCAAGTCCTGAAAGAGATAGGGAGAGTTTGAAGGTAGAAATTGAGACATCTGAGGAAATACAAGAGAAACAAGTACAGAAGCAGACCCTTCCAAGCAAAGCATTTGAGAGAGAAGTAGAGAGACCAGTAGCAAACAGAGAGTGCGATCCAGCCGAGTTAGAAGAGAAGGTGCCCAAAGTGATCCTGGAGAGAGATACACAGAGAGGGGAGCCAGAGGGAGGGAGCCag/cag																																																																														
SMO	6608	MSKCC	GRCh37	7	128850933	128850933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	294	532	0	ENST00000249373.3:c.1780G>A	p.Val594Met	p.V594M	ENST00000249373	NM_005631.4	594	Gtg/Atg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879430	151879430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	81	565	0	ENST00000262189.6:c.5515A>T	p.Thr1839Ser	p.T1839S	ENST00000262189	NM_170606.2	1839	Acg/Tcg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741496	145741496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	1624	838	0	ENST00000428558.2:c.1007C>T	p.Thr336Ile	p.T336I	ENST00000428558	NM_004260.3	336	aCa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	85	744	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175199	112175199	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	17	258	0	ENST00000257430.4:c.3910del	p.Ile1304Ter	p.I1304*	ENST00000257430	NM_000038.5	1303	cAa/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	610	682	6	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
RB1	5925	MSKCC	GRCh37	13	48954192	48954192	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	181	173	2	ENST00000267163.4:c.1393G>T	p.Glu465Ter	p.E465*	ENST00000267163	NM_000321.2	465	Gaa/Taa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057235	180057235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148392893		P-0049926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	432	674	8	ENST00000261937.6:c.503C>T	p.Thr168Met	p.T168M	ENST00000261937	NM_182925.4	168	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112177660	112177660	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	257	388	1	ENST00000257430.4:c.6371del	p.Leu2124TyrfsTer15	p.L2124Yfs*15	ENST00000257430	NM_000038.5	2123	tgT/tg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	104	321	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
ATM	472	MSKCC	GRCh37	11	108150335	108150335	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	110	243	0	ENST00000278616.4:c.3402G>A	p.Met1134Ile	p.M1134I	ENST00000278616	NM_000051.3	1134	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	204	640	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59793411	59793411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	32	397	0	ENST00000259008.2:c.2393G>A	p.Arg798Gln	p.R798Q	ENST00000259008	NM_032043.2	798	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878863	151878863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	281	519	0	ENST00000262189.6:c.6082C>T	p.Arg2028Ter	p.R2028*	ENST00000262189	NM_170606.2	2028	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212103	36212104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	142	625	3	ENST00000222270.7:c.1859dup	p.Pro621SerfsTer55	p.P621Sfs*55	ENST00000222270	NM_014727.1	618	-/C																																																																														
TP63	8626	MSKCC	GRCh37	3	189590683	189590683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	130	408	0	ENST00000264731.3:c.1248G>C	p.Lys416Asn	p.K416N	ENST00000264731	NM_003722.4	416	aaG/aaC																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184787	32184787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	33	562	0	ENST00000375023.3:c.1796C>A	p.Pro599His	p.P599H	ENST00000375023	NM_004557.3	599	cCc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974741	21974741	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	58	322	0	ENST00000304494.5:c.86G>C	p.Arg29Pro	p.R29P	ENST00000304494	NM_000077.4	29	cGg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974741	21974741	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	58	322	0	ENST00000304494.5:c.86G>C	p.Arg29Pro	p.R29P	ENST00000304494	NM_000077.4	29	cGg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	187	667	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	38	502	1	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	38	502	1	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627549	14627550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	51	586	0	ENST00000254322.2:c.520dup	p.Glu174GlyfsTer61	p.E174Gfs*61	ENST00000254322	NM_006145.1	174	gag/gGag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965421	68965421	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	50	733	0	ENST00000288368.4:c.1033A>T	p.Thr345Ser	p.T345S	ENST00000288368	NM_024870.2	345	Aca/Tca																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	469	503	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	112	399	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	282	472	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	266	761	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	105	424	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	120	347	1	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945696	17945696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3213409		P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	176	755	0	ENST00000458235.1:c.2164G>A	p.Val722Ile	p.V722I	ENST00000458235	NM_000215.3	722	Gtc/Atc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519134	103519135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	36	454	0	ENST00000355739.4:c.2478dup	p.Asn827Ter	p.N827*	ENST00000355739	NM_000123.3	824	-/T																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	150	826	4	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	91	521	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	26	398	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303305	15303305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	159	832	1	ENST00000263388.2:c.223C>T	p.Arg75Trp	p.R75W	ENST00000263388	NM_000435.2	75	Cgg/Tgg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	126	522	1	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	171	895	2	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	110	445	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72861878	72861878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201983708		P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	81	538	0	ENST00000325599.8:c.1004G>A	p.Arg335His	p.R335H	ENST00000325599	NM_018130.2	335	cGc/cAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	125	399	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	228	328	0	ENST00000379607.5:c.38G>A	p.Arg13His	p.R13H	ENST00000379607	NM_001412.3	13	cGc/cAc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372092	55372093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	78	456	0	ENST00000297316.4:c.788dup	p.Glu264GlyfsTer101	p.E264Gfs*101	ENST00000297316	NM_022454.3	261	ggc/ggCc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621893	1621893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	104	824	0	ENST00000344749.5:c.899C>T	p.Thr300Met	p.T300M	ENST00000344749	NM_001136139.2	300	aCg/aTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41573977	41573977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201569846		P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	181	580	1	ENST00000263253.7:c.6262C>T	p.Arg2088Trp	p.R2088W	ENST00000263253	NM_001429.3	2088	Cgg/Tgg																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647685	2647685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	308	632	0	ENST00000342085.4:c.1588G>A	p.Gly530Arg	p.G530R	ENST00000342085	NM_002613.4	530	Ggg/Agg																																																																														
PARP1	142	MSKCC	GRCh37	1	226555273	226555273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	183	544	0	ENST00000366794.5:c.2314G>A	p.Glu772Lys	p.E772K	ENST00000366794	NM_001618.3	772	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248737	212248737	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	38	321	0	ENST00000342788.4:c.3530delA	p.Asn1177MetfsTer27	p.N1177Mfs*27	ENST00000342788	NM_005235.2	1177	aAt/at																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	58	717	12	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088712	27088712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	120	708	0	ENST00000324856.7:c.2321G>A	p.Arg774His	p.R774H	ENST00000324856	NM_006015.4	774	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106421	27106421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	113	645	0	ENST00000324856.7:c.6032T>C	p.Leu2011Pro	p.L2011P	ENST00000324856	NM_006015.4	2011	cTg/cCg																																																																														
CCND1	595	MSKCC	GRCh37	11	69466025	69466026	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGA			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	121	824	0	ENST00000227507.2:c.866_868dup	p.Asp289dup	p.D289dup	ENST00000227507	NM_053056.2	289	acc/acCGAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119750	70119751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	192	739	0	ENST00000245479.2:c.754dup	p.Leu252ProfsTer44	p.L252Pfs*44	ENST00000245479	NM_000346.3	251	gac/gaCc																																																																														
ATR	545	MSKCC	GRCh37	3	142281237	142281237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	93	475	0	ENST00000350721.4:c.1007G>A	p.Arg336Gln	p.R336Q	ENST00000350721	NM_001184.3	336	cGg/cAg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639760	3639760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	260	852	1	ENST00000294008.3:c.3879G>T	p.Arg1293Ser	p.R1293S	ENST00000294008	NM_032444.2	1293	agG/agT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518228	187518228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199692977		P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	86	412	0	ENST00000441802.2:c.12466G>A	p.Glu4156Lys	p.E4156K	ENST00000441802	NM_005245.3	4156	Gag/Aag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120506213	120506213	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	54	330	0	ENST00000256646.2:c.1899C>A	p.Cys633Ter	p.C633*	ENST00000256646	NM_024408.3	633	tgC/tgA																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246091244	246091244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	104	450	2	ENST00000388985.4:c.691G>A	p.Val231Met	p.V231M	ENST00000388985		231	Gtg/Atg																																																																														
RET	5979	MSKCC	GRCh37	10	43596063	43596063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	53	687	1	ENST00000355710.3:c.230G>A	p.Arg77His	p.R77H	ENST00000355710	NM_020975.4	77	cGc/cAc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63700158	63700158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	50	208	1	ENST00000279873.7:c.493G>A	p.Ala165Thr	p.A165T	ENST00000279873	NM_032199.2	165	Gca/Aca																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63759925	63759925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	79	362	2	ENST00000279873.7:c.578G>A	p.Arg193His	p.R193H	ENST00000279873	NM_032199.2	193	cGc/cAc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332808	70332808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	47	620	0	ENST00000373644.4:c.713G>T	p.Gly238Val	p.G238V	ENST00000373644	NM_030625.2	238	gGt/gTt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279676	123279677	+	missense_variant	Missense_Mutation	DNP	CG	CG	AC			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	161	431	0	ENST00000358487.5:c.755_756delinsGT	p.Ser252Cys	p.S252C	ENST00000358487	NM_000141.4	252	tCG/tGT																																																																														
MRE11A	0	MSKCC	GRCh37	11	94203804	94203804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	40	197	0	ENST00000323929.3:c.850G>A	p.Val284Ile	p.V284I	ENST00000323929	NM_005591.3	284	Gtt/Att																																																																														
FLT1	2321	MSKCC	GRCh37	13	28901661	28901661	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	136	370	0	ENST00000282397.4:c.2734T>A	p.Cys912Ser	p.C912S	ENST00000282397	NM_002019.4	912	Tgc/Agc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56434974	56434974	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	127	755	0	ENST00000407977.2:c.2163T>A	p.Asn721Lys	p.N721K	ENST00000407977		721	aaT/aaA																																																																														
TCF3	6929	MSKCC	GRCh37	19	1632103	1632103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	123	712	0	ENST00000344749.5:c.232G>A	p.Gly78Ser	p.G78S	ENST00000344749	NM_001136139.2	78	Ggc/Agc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303256	15303256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	162	909	1	ENST00000263388.2:c.272G>A	p.Gly91Asp	p.G91D	ENST00000263388	NM_000435.2	91	gGt/gAt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349961	15349961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	48	798	0	ENST00000263377.2:c.3691G>A	p.Ala1231Thr	p.A1231T	ENST00000263377	NM_058243.2	1231	Gct/Act																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218495	36218495	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	178	732	0	ENST00000222270.7:c.4274T>C	p.Val1425Ala	p.V1425A	ENST00000222270	NM_014727.1	1425	gTg/gCg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033451	48033451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	75	382	0	ENST00000234420.5:c.3755T>C	p.Leu1252Ser	p.L1252S	ENST00000234420	NM_000179.2	1252	tTa/tCa																																																																														
CASP8	841	MSKCC	GRCh37	2	202150007	202150007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	186	578	0	ENST00000358485.4:c.1448C>T	p.Ser483Leu	p.S483L	ENST00000358485	NM_001080125.1	483	tCa/tTa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62322226	62322226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	42	830	0	ENST00000508582.2:c.2554C>T	p.Arg852Trp	p.R852W	ENST00000508582		852	Cgg/Tgg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467724	66467725	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	65	405	0	ENST00000273854.3:c.544dup	p.Ser182LysfsTer6	p.S182Kfs*6	ENST00000273854	NM_004439.5	182	agc/aAgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542324	187542324	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	65	359	0	ENST00000441802.2:c.5416T>G	p.Leu1806Val	p.L1806V	ENST00000441802	NM_005245.3	1806	Ttg/Gtg																																																																														
TERT	7015	MSKCC	GRCh37	5	1294898	1294898	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	17	107	0	ENST00000310581.5:c.207del	p.Ser70ProfsTer8	p.S70Pfs*8	ENST00000310581	NM_198253.2	69	ccC/cc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32183066	32183066	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	262	877	0	ENST00000375023.3:c.1958A>G	p.Asp653Gly	p.D653G	ENST00000375023	NM_004557.3	653	gAt/gGt																																																																														
NBN	4683	MSKCC	GRCh37	8	90955481	90955481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	107	409	0	ENST00000265433.3:c.2184G>T	p.Glu728Asp	p.E728D	ENST00000265433	NM_002485.4	728	gaG/gaT																																																																														
ABL1	25	MSKCC	GRCh37	9	133753897	133753897	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	159	610	0	ENST00000318560.5:c.1366T>A	p.Tyr456Asn	p.Y456N	ENST00000318560	NM_005157.4	456	Tac/Aac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222815	53222815	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	228	809	0	ENST00000375401.3:c.4121T>G	p.Leu1374Arg	p.L1374R	ENST00000375401	NM_004187.3	1374	cTg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	90	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041366	42041366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	205	596	1	ENST00000219905.7:c.5561C>T	p.Ser1854Phe	p.S1854F	ENST00000219905	NM_001164273.1	1854	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	183	665	0	ENST00000269305.4:c.815T>G	p.Val272Gly	p.V272G	ENST00000269305	NM_001126112.2	272	gTg/gGg																																																																														
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	172	740	0	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086017	16086017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	55	594	1	ENST00000281043.3:c.1193G>T	p.Arg398Leu	p.R398L	ENST00000281043	NM_005378.4	398	cGg/cTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500825	149500825	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	108	660	0	ENST00000261799.4:c.2405A>T	p.Asp802Val	p.D802V	ENST00000261799	NM_002609.3	802	gAc/gTc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048231	180048231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	45	827	0	ENST00000261937.6:c.2042C>T	p.Thr681Met	p.T681M	ENST00000261937	NM_182925.4	681	aCg/aTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508517	106508517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	68	305	0	ENST00000359195.3:c.511G>T	p.Asp171Tyr	p.D171Y	ENST00000359195	NM_002649.2	171	Gat/Tat																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370775	55370775	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	98	516	0	ENST00000297316.4:c.77G>T	p.Gly26Val	p.G26V	ENST00000297316	NM_022454.3	26	gGg/gTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389329	8389329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	122	558	0	ENST00000356435.5:c.4289G>T	p.Gly1430Val	p.G1430V	ENST00000356435		1430	gGa/gTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692981	89692982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	29	285	0	ENST00000371953.3:c.469dupG	p.Glu157GlyfsTer23	p.E157Gfs*23	ENST00000371953	NM_000314.4	155	-/G																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820785	3820785	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0049933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	267	973	0	ENST00000262367.5:c.2666C>G	p.Ser889Ter	p.S889*	ENST00000262367	NM_004380.2	889	tCa/tGa																																																																														
PGR	5241	MSKCC	GRCh37	11	100998922	100998922	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	194	703	0	ENST00000325455.5:c.880T>A	p.Ser294Thr	p.S294T	ENST00000325455	NM_001202474.3	294	Tcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578586	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGTAGGAAGAGGAAGGAGACAGAGTTGAAAG	TGTAGGAAGAGGAAGGAGACAGAGTTGAAAG	-			P-0049933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	371	737	0	ENST00000269305.4:c.376-32_376-2del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500548	149500548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	186	743	0	ENST00000261799.4:c.2489G>C	p.Arg830Thr	p.R830T	ENST00000261799	NM_002609.3	830	aGg/aCg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593607	55593612	+	inframe_deletion	In_Frame_Del	DEL	AGGTTG	AGGTTG	-			P-0049934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	55	188	0	ENST00000288135.5:c.1673_1678del	p.Lys558_Val560delinsIle	p.K558_V560delinsI	ENST00000288135	NM_000222.2	558	aAGGTTGtt/att																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647606	3647606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	58	896	3	ENST00000294008.3:c.1457G>A	p.Arg486His	p.R486H	ENST00000294008	NM_032444.2	486	cGt/cAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	49	361	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0049953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	125	413	0				ENST00000310581	NM_198253.2																																																																																
PARP1	142	MSKCC	GRCh37	1	226589917	226589917	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	70	489	1	ENST00000366794.5:c.284C>A	p.Thr95Lys	p.T95K	ENST00000366794	NM_001618.3	95	aCa/aAa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129464	64129465	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0049953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	119	968	0	ENST00000334205.4:c.896_897delinsTT	p.Pro299Leu	p.P299L	ENST00000334205	NM_003942.2	299	cCC/cTT																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335563	73335563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	58	274	0	ENST00000377767.4:c.2608G>A	p.Glu870Lys	p.E870K	ENST00000377767	NM_014953.3	870	Gaa/Aaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0049958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	397	880	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0049958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	287	431	0				ENST00000310581	NM_198253.2																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44949016	44949016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	440	233	0	ENST00000377967.4:c.3577T>C	p.Trp1193Arg	p.W1193R	ENST00000377967	NM_021140.2	1193	Tgg/Cgg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044473	47044473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	699	349	0	ENST00000329236.7:c.1736G>C	p.Arg579Pro	p.R579P	ENST00000329236	NM_001204466.1	579	cGc/cCc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101401	27101402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	247	620	1	ENST00000324856.7:c.4689dup	p.Met1564HisfsTer8	p.M1564Hfs*8	ENST00000324856	NM_006015.4	1561	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	209	789	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	146	449	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455075	50455075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	21	403	0	ENST00000331340.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000331340	NM_006060.4	208	Cga/Tga																																																																														
PAK1	5058	MSKCC	GRCh37	11	77066713	77066713	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs201726311		P-0049960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	25	260	0	ENST00000356341.3:c.772C>T	p.Arg258Ter	p.R258*	ENST00000356341	NM_002576.4	258	Cga/Tga																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250808	99250808	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	28	484	0	ENST00000268035.6:c.112G>C	p.Asp38His	p.D38H	ENST00000268035	NM_000875.3	38	Gac/Cac																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224152	39224152	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	60	403	0	ENST00000402219.2:c.2992G>T	p.Gly998Ter	p.G998*	ENST00000402219	NM_005633.3	998	Gga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735455	40735455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	91	770	0	ENST00000373198.4:c.3418G>A	p.Ala1140Thr	p.A1140T	ENST00000373198	NM_133170.3	1140	Gcc/Acc																																																																														
SDHA	6389	MSKCC	GRCh37	5	240533	240533	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			9	11	17	0	ENST00000264932.6:c.1493A>C	p.Lys498Thr	p.K498T	ENST00000264932	NM_004168.2	498	aAa/aCa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069619	69069619	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	44	542	0	ENST00000288368.4:c.4294C>T	p.Gln1432Ter	p.Q1432*	ENST00000288368	NM_024870.2	1432	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	84	887	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
RB1	5925	MSKCC	GRCh37	13	48878115	48878115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	10	259	0	ENST00000267163.4:c.68del	p.Pro23ArgfsTer42	p.P23Rfs*42	ENST00000267163	NM_000321.2	23	Ccg/cg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450399	50450399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	44	520	0	ENST00000331340.3:c.583C>A	p.His195Asn	p.H195N	ENST00000331340	NM_006060.4	195	Cac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	250	573	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73775231	73775231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1375	81	771	2	ENST00000254810.4:c.25C>A	p.Arg9Ser	p.R9S	ENST00000254810	NM_005324.3	9	Cgt/Agt																																																																														
NF1	4763	MSKCC	GRCh37	17	29552264	29552264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	71	491	0	ENST00000358273.4:c.1997C>T	p.Ser666Phe	p.S666F	ENST00000358273	NM_001042492.2	666	tCt/tTt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66777472	66777472	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	221	833	0	ENST00000307102.5:c.838G>T	p.Glu280Ter	p.E280*	ENST00000307102	NM_002755.3	280	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579851	7579851	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	396	831	0	ENST00000269305.4:c.62del	p.Asp21AlafsTer23	p.D21Afs*23	ENST00000269305	NM_001126112.2	21	gAc/gc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56348484	56348484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	89	410	0	ENST00000348428.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000348428	NM_006785.3	98	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	156	687	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	57	544	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0049977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	438	634	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	154	771	1	ENST00000269305.4:c.548C>A	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tAa																																																																														
PARP1	142	MSKCC	GRCh37	1	226564979	226564979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	258	444	0	ENST00000366794.5:c.1771del	p.Arg591ValfsTer5	p.R591Vfs*5	ENST00000366794	NM_001618.3	591	Cgt/gt																																																																														
AKT1	207	MSKCC	GRCh37	14	105258972	105258972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1192	93	912	0	ENST00000349310.3:c.9C>A	p.Asp3Glu	p.D3E	ENST00000349310	NM_001014432.1	3	gaC/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	60	755	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0049978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	27	686	2	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	589	902	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89871709	89871709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144560850		P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	212	740	3	ENST00000389301.3:c.688G>A	p.Val230Ile	p.V230I	ENST00000389301	NM_000135.2	230	Gtc/Atc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900946	114900946	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	342	611	0	ENST00000543371.1:c.556A>G	p.Asn186Asp	p.N186D	ENST00000543371	NM_001198531.1	186	Aac/Gac																																																																														
FLT1	2321	MSKCC	GRCh37	13	28886129	28886129	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	273	492	0	ENST00000282397.4:c.3492+1G>T		p.X1164_splice	ENST00000282397	NM_002019.4	1164																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537954	212537954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	287	544	0	ENST00000342788.4:c.1651A>G	p.Ile551Val	p.I551V	ENST00000342788	NM_005235.2	551	Atc/Gtc																																																																														
KIT	3815	MSKCC	GRCh37	4	55564652	55564652	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	219	651	2	ENST00000288135.5:c.540T>A	p.His180Gln	p.H180Q	ENST00000288135	NM_000222.2	180	caT/caA																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270451	98270451	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	559	726	0	ENST00000331920.6:c.193A>C	p.Ile65Leu	p.I65L	ENST00000331920	NM_000264.3	65	Att/Ctt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	236	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967173	134967173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	193	428	0	ENST00000398015.3:c.2512G>A	p.Glu838Lys	p.E838K	ENST00000398015	NM_004441.4	838	Gag/Aag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178257	56178258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	146	266	0	ENST00000399503.3:c.3236dup	p.Asn1079LysfsTer2	p.N1079Kfs*2	ENST00000399503	NM_005921.1	1077	tca/tcAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	68	491	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	44	285	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	139	854	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133523	55133523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142492533		P-0049981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	85	591	1	ENST00000257290.5:c.827C>T	p.Thr276Met	p.T276M	ENST00000257290	NM_006206.4	276	aCg/aTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245865	46245865	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0049981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	48	412	0	ENST00000334344.6:c.3959C>G	p.Ser1320Ter	p.S1320*	ENST00000334344	NM_152641.2	1320	tCa/tGa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732942	30732942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	135	395	1	ENST00000359013.4:c.1630G>A	p.Glu544Lys	p.E544K	ENST00000359013	NM_001024847.2	544	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152007146	152007146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	141	402	0	ENST00000262189.6:c.754C>T	p.His252Tyr	p.H252Y	ENST00000262189	NM_170606.2	252	Cat/Tat																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347947	347947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	461	1161	1	ENST00000262320.3:c.1559C>T	p.Ser520Leu	p.S520L	ENST00000262320	NM_003502.3	520	tCa/tTa																																																																														
TET2	54790	MSKCC	GRCh37	4	106197197	106197197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	147	404	0	ENST00000380013.4:c.5530G>A	p.Asp1844Asn	p.D1844N	ENST00000380013	NM_001127208.2	1844	Gat/Aat																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323241	31323241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	292	812	0	ENST00000412585.2:c.748C>A	p.Gln250Lys	p.Q250K	ENST00000412585	NM_005514.6	250	Cag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864407	151864407	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	114	442	0	ENST00000262189.6:c.9574C>G	p.Gln3192Glu	p.Q3192E	ENST00000262189	NM_170606.2	3192	Caa/Gaa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223431	53223431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	257	879	0	ENST00000375401.3:c.3928G>A	p.Glu1310Lys	p.E1310K	ENST00000375401	NM_004187.3	1310	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0049986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	15	842	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	212	100	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	160	160	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	132	155	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	30	161	0	ENST00000245479.2:c.791G>A	p.Arg264Lys	p.R264K	ENST00000245479	NM_000346.3	264	aGa/aAa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271150	38271150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	127	158	0	ENST00000425967.3:c.2558G>A	p.Arg853His	p.R853H	ENST00000425967	NM_001174067.1	853	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786039	3786039	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0049988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	126	123	0	ENST00000262367.5:c.4726G>T	p.Glu1576Ter	p.E1576*	ENST00000262367	NM_004380.2	1576	Gag/Tag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520447	176520447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	65	217	0	ENST00000292408.4:c.1292C>G	p.Ser431Cys	p.S431C	ENST00000292408	NM_213647.1	431	tCc/tGc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652247	36652251	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGG	AGGGG	-			P-0049988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	177	182	0	ENST00000244741.5:c.371_375del	p.Gly124AlafsTer3	p.G124Afs*3	ENST00000244741	NM_000389.4	123	tcAGGGGag/tcag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528564	157528564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	75	162	0	ENST00000346085.5:c.6289G>T	p.Asp2097Tyr	p.D2097Y	ENST00000346085	NM_020732.3	2097	Gac/Tac																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904831	101904831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	187	333	0	ENST00000374994.4:c.819G>C	p.Trp273Cys	p.W273C	ENST00000374994	NM_004612.2	273	tgG/tgC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	28	448	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	35	702	0	ENST00000269305.4:c.653T>A	p.Val218Glu	p.V218E	ENST00000269305	NM_001126112.2	218	gTg/gAg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608282	28608282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	27	551	0	ENST00000241453.7:c.1774G>A	p.Val592Ile	p.V592I	ENST00000241453	NM_004119.2	592	Gtt/Att																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	50	401	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	83	681	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0049992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	66	264	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912654		P-0049992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	164	998	0	ENST00000269305.4:c.469G>A	p.Val157Ile	p.V157I	ENST00000269305	NM_001126112.2	157	Gtc/Atc																																																																														
ALK	238	MSKCC	GRCh37	2	29606678	29606678	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188859061		P-0049992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	29	632	2	ENST00000389048.3:c.1202G>A	p.Arg401Gln	p.R401Q	ENST00000389048	NM_004304.4	401	cGa/cAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468083	50468083	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775617502		P-0049992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	65	653	1	ENST00000331340.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000331340	NM_006060.4	440	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	470	386	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	58	267	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	189	652	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																														
TP63	8626	MSKCC	GRCh37	3	189586425	189586425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	136	399	0	ENST00000264731.3:c.1049G>C	p.Arg350Thr	p.R350T	ENST00000264731	NM_003722.4	350	aGa/aCa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423503	88423503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	135	486	0	ENST00000360948.2:c.2332G>A	p.Glu778Lys	p.E778K	ENST00000360948	NM_001012338.2	778	Gag/Aag																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910756	29910756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	172	718	0	ENST00000376809.5:c.296G>C	p.Arg99Pro	p.R99P	ENST00000376809	NM_002116.7	99	cGa/cCa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039904	47039904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	344	342	0	ENST00000329236.7:c.1013A>G	p.Gln338Arg	p.Q338R	ENST00000329236	NM_001204466.1	338	cAg/cGg																																																																														
ATM	472	MSKCC	GRCh37	11	108206684	108206684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	128	259	0	ENST00000278616.4:c.8264A>G	p.Tyr2755Cys	p.Y2755C	ENST00000278616	NM_000051.3	2755	tAt/tGt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38947457	38947457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	97	252	0	ENST00000357387.3:c.4223C>T	p.Ser1408Leu	p.S1408L	ENST00000357387	NM_152756.3	1408	tCa/tTa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073521	8073521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	26	348	0	ENST00000377482.5:c.1138C>G	p.Leu380Val	p.L380V	ENST00000377482	NM_018948.3	380	Ctg/Gtg																																																																														
STK40	83931	MSKCC	GRCh37	1	36823872	36823872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	130	462	0	ENST00000373129.3:c.310G>C	p.Asp104His	p.D104H	ENST00000373129	NM_032017.1	104	Gat/Cat																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273024	115273024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	203	451	0	ENST00000438362.2:c.1349G>C	p.Arg450Thr	p.R450T	ENST00000438362	NM_001242891.1	450	aGa/aCa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864729	57864729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	187	744	0	ENST00000228682.2:c.2206G>A	p.Glu736Lys	p.E736K	ENST00000228682	NM_005269.2	736	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991356	72991356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	153	603	1	ENST00000268489.5:c.2689G>T	p.Gly897Trp	p.G897W	ENST00000268489	NM_006885.3	897	Ggg/Tgg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246296	41246296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	182	508	0	ENST00000357654.3:c.1252G>C	p.Glu418Gln	p.E418Q	ENST00000357654	NM_007294.3	418	Gag/Cag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71096189	71096189	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	121	284	1	ENST00000318789.4:c.568C>T	p.Gln190Ter	p.Q190*	ENST00000318789	NM_032682.5	190	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480319	89480319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	61	235	0	ENST00000336596.2:c.2156C>A	p.Thr719Asn	p.T719N	ENST00000336596	NM_005233.5	719	aCt/aAt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149510151	149510151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	257	694	0	ENST00000261799.4:c.1318G>C	p.Gly440Arg	p.G440R	ENST00000261799	NM_002609.3	440	Ggc/Cgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945043	151945044	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	56	421	0	ENST00000262189.6:c.2475_2476delinsTT	p.Met825_Gly826delinsIleCys	p.M825_G826delinsIC	ENST00000262189	NM_170606.2	825	atGGgt/atTTgt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395252	139395252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	32	817	0	ENST00000277541.6:c.5686G>C	p.Glu1896Gln	p.E1896Q	ENST00000277541	NM_017617.3	1896	Gag/Cag																																																																														
AR	367	MSKCC	GRCh37	X	66905936	66905936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	125	177	0	ENST00000374690.3:c.1853G>T	p.Arg618Leu	p.R618L	ENST00000374690	NM_000044.3	618	cGg/cTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245219	46245219	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	103	400	0	ENST00000334344.6:c.3313C>T	p.Gln1105Ter	p.Q1105*	ENST00000334344	NM_152641.2	1105	Caa/Taa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0050002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	61	294	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653835	89653835	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	35	354	0	ENST00000371953.3:c.133delG	p.Val45TyrfsTer9	p.V45Yfs*9	ENST00000371953	NM_000314.4	45	Gta/ta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023308	27023309	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0050002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	41	127	0	ENST00000324856.7:c.414_415del	p.Ala139ArgfsTer260	p.A139Rfs*260	ENST00000324856	NM_006015.4	138	tcAGcc/tccc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692991	89692992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	132	384	0	ENST00000371953.3:c.477dup	p.Thr160AspfsTer20	p.T160Dfs*20	ENST00000371953	NM_000314.4	159	agg/aGgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	783	511	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	346	612	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	137	331	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
PARK2	0	MSKCC	GRCh37	6	162683691	162683691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	173	547	0	ENST00000366898.1:c.278G>A	p.Gly93Glu	p.G93E	ENST00000366898	NM_004562.2	93	gGa/gAa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602541	10602541	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	352	812	0	ENST00000171111.5:c.1037A>G	p.Asn346Ser	p.N346S	ENST00000171111	NM_203500.1	346	aAc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	117	355	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579328	7579328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	126	648	0	ENST00000269305.4:c.359A>G	p.Lys120Arg	p.K120R	ENST00000269305	NM_001126112.2	120	aAg/aGg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0050005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	54	224	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575116	48575116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	28	263	0	ENST00000342988.3:c.310C>T	p.Leu104Phe	p.L104F	ENST00000342988	NM_005359.5	104	Ctt/Ttt																																																																														
ATM	472	MSKCC	GRCh37	11	108121531	108121531	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587779815		P-0050005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	89	429	1	ENST00000278616.4:c.1339C>T	p.Arg447Ter	p.R447*	ENST00000278616	NM_000051.3	447	Cga/Tga																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073827	8073828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCGGAGTTAG			P-0050005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	59	321	0	ENST00000377482.5:c.821_831dup	p.Glu278LeufsTer21	p.E278Lfs*21	ENST00000377482	NM_018948.3	277	-/CTAACTCCGAT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527844	157527844	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	116	410	0	ENST00000346085.5:c.5569A>C	p.Lys1857Gln	p.K1857Q	ENST00000346085	NM_020732.3	1857	Aaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	282	394	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	414	661	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5286129	5286129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	302	727	11	ENST00000357368.4:c.23G>A	p.Gly8Asp	p.G8D	ENST00000357368	NM_002850.3	8	gGc/gAc																																																																														
AXL	558	MSKCC	GRCh37	19	41763406	41763406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	73	502	1	ENST00000301178.4:c.2205C>A	p.Phe735Leu	p.F735L	ENST00000301178	NM_021913.4	735	ttC/ttA																																																																														
APC	324	MSKCC	GRCh37	5	112175138	112175138	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	87	211	0	ENST00000257430.4:c.3847del	p.Ala1283LeufsTer5	p.A1283Lfs*5	ENST00000257430	NM_000038.5	1283	Gct/ct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918691	44918691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	44	448	0	ENST00000377967.4:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000377967	NM_021140.2	392	Gca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	208	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	209	660	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252866	36252866	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	37	291	0	ENST00000300305.3:c.496C>T	p.Arg166Ter	p.R166*	ENST00000300305		166	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120016	70120016	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	94	123	0	ENST00000245479.2:c.1018C>T	p.Gln340Ter	p.Q340*	ENST00000245479	NM_000346.3	340	Cag/Tag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	427	706	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175577	112175577	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	199	293	0	ENST00000257430.4:c.4288del	p.Thr1430ProfsTer43	p.T1430Pfs*43	ENST00000257430	NM_000038.5	1429	cAa/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426415	49426415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	148	792	0	ENST00000301067.7:c.12073G>A	p.Glu4025Lys	p.E4025K	ENST00000301067	NM_003482.3	4025	Gaa/Aaa																																																																														
REL	5966	MSKCC	GRCh37	2	61149452	61149452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	126	293	0	ENST00000295025.8:c.1642G>A	p.Ala548Thr	p.A548T	ENST00000295025	NM_002908.2	548	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106650	27106651	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	419	571	0	ENST00000324856.7:c.6264_6266dup	p.Leu2089dup	p.L2089dup	ENST00000324856	NM_006015.4	2089	-/CTC																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982104	201982104	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	244	727	0	ENST00000359651.3:c.628T>G	p.Ser210Ala	p.S210A	ENST00000359651		210	Tca/Gca																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200902	67200902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	239	630	0	ENST00000312629.5:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000312629	NM_003952.2	297	cGg/cAg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119969	70120021	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCG	CCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCG	-			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	32	350	0	ENST00000245479.2:c.975_1027del	p.Ser330AlafsTer230	p.S330Afs*230	ENST00000245479	NM_000346.3	324	aCCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCG/a																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272520	15272520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	194	545	0	ENST00000263388.2:c.5919G>T	p.Glu1973Asp	p.E1973D	ENST00000263388	NM_000435.2	1973	gaG/gaT																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612866	228612866	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138699472		P-0050008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	282	727	1	ENST00000366696.1:c.161G>A	p.Arg54His	p.R54H	ENST00000366696	NM_003493.2	54	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175069	112175069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	24	157	0	ENST00000257430.4:c.3778C>T	p.Gln1260Ter	p.Q1260*	ENST00000257430	NM_000038.5	1260	Cag/Tag																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647222	2647222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	132	458	0	ENST00000342085.4:c.1500G>T	p.Trp500Cys	p.W500C	ENST00000342085	NM_002613.4	500	tgG/tgT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349016	89349016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	82	610	0	ENST00000301030.4:c.3934G>C	p.Gly1312Arg	p.G1312R	ENST00000301030	NM_001256183.1	1312	Ggg/Cgg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973779	15973785	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTGAC	ATTTGAC	-			P-0050008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	116	410	1	ENST00000268712.3:c.4207_4213del	p.Val1403ProfsTer2	p.V1403Pfs*2	ENST00000268712	NM_006311.3	1403	GTCAAATcc/cc																																																																														
NF1	4763	MSKCC	GRCh37	17	29528178	29528178	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	14	399	0	ENST00000358273.4:c.1185+1G>T		p.X395_splice	ENST00000358273	NM_001042492.2	395																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050021-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	37	303	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050021-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	39	505	1	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468056	50468056	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050021-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	56	524	0	ENST00000331340.3:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000331340	NM_006060.4	431	Gag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599889	10599889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050021-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	127	593	2	ENST00000171111.5:c.1687C>T	p.Gln563Ter	p.Q563*	ENST00000171111	NM_203500.1	563	Cag/Tag																																																																														
MET	4233	MSKCC	GRCh37	7	116411949	116412050	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAACTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTTCCAGAAGGTATATT	TCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAACTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTTCCAGAAGGTATATT	-			P-0050024-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			664	277	581	0	ENST00000397752.3:c.2937_3028+10del		p.X979_splice	ENST00000397752	NM_000245.2	979																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050035-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	196	330	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0050035-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	317	559	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9928064	9928064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050035-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	134	323	0	ENST00000330684.3:c.1675G>A	p.Val559Met	p.V559M	ENST00000330684	NM_001134407.1	559	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	252	467	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs483352695		P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	60	758	1	ENST00000269305.4:c.736A>T	p.Met246Leu	p.M246L	ENST00000269305	NM_001126112.2	246	Atg/Ttg																																																																														
IRF4	3662	MSKCC	GRCh37	6	394879	394879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	21	535	0	ENST00000380956.4:c.275C>T	p.Thr92Ile	p.T92I	ENST00000380956	NM_001195286.1	92	aCc/aTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944603	32944603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	32	558	0	ENST00000380152.3:c.8396G>T	p.Arg2799Ile	p.R2799I	ENST00000380152		2799	aGa/aTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041683	42041683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	38	499	0	ENST00000219905.7:c.5878C>T	p.Leu1960Phe	p.L1960F	ENST00000219905	NM_001164273.1	1960	Ctt/Ttt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303014	15303014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	56	1031	0	ENST00000263388.2:c.436T>C	p.Cys146Arg	p.C146R	ENST00000263388	NM_000435.2	146	Tgc/Cgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620644	52620644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	33	438	0	ENST00000394830.3:c.3109C>T	p.Arg1037Trp	p.R1037W	ENST00000394830	NM_018313.4	1037	Cgg/Tgg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146605	55146605	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	13	540	0	ENST00000257290.5:c.2279C>G	p.Ser760Ter	p.S760*	ENST00000257290	NM_006206.4	760	tCa/tGa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467613	66467613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	42	371	0	ENST00000273854.3:c.656C>T	p.Ala219Val	p.A219V	ENST00000273854	NM_004439.5	219	gCt/gTt																																																																														
PARK2	0	MSKCC	GRCh37	6	162683704	162683704	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0050055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	34	679	0	ENST00000366898.1:c.265A>T	p.Arg89Ter	p.R89*	ENST00000366898	NM_004562.2	89	Aga/Tga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15383709	15383709	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0050058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	151	718	1	ENST00000263377.2:c.202A>T	p.Arg68Ter	p.R68*	ENST00000263377	NM_058243.2	68	Aga/Tga																																																																														
VHL	7428	MSKCC	GRCh37	3	10188226	10188227	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0050058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	108	587	0	ENST00000256474.2:c.369_370del	p.His125ArgfsTer6	p.H125Rfs*6	ENST00000256474	NM_000551.3	123	ggGAca/ggca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668805	52668806	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TGACTCTCCCTCTTCA			P-0050058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	36	303	0	ENST00000394830.3:c.1098_1113dup	p.Glu372Ter	p.E372*	ENST00000394830	NM_018313.4	371	-/TGAAGAGGGAGAGTCA																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32183117	32183117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	165	895	2	ENST00000375023.3:c.1907C>T	p.Pro636Leu	p.P636L	ENST00000375023	NM_004557.3	636	cCc/cTc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135802587	135802587	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0050058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	50	278	0	ENST00000298552.3:c.210+1G>C		p.X70_splice	ENST00000298552	NM_001162426.1	70																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0050059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	443	644	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672399	30672399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	133	540	0	ENST00000376406.3:c.4561C>T	p.Arg1521Trp	p.R1521W	ENST00000376406	NM_014641.2	1521	Cgg/Tgg																																																																														
PARP1	142	MSKCC	GRCh37	1	226573267	226573267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	86	613	0	ENST00000366794.5:c.949G>C	p.Ala317Pro	p.A317P	ENST00000366794	NM_001618.3	317	Gcc/Ccc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49924877	49924877	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	134	907	0	ENST00000296474.3:c.4066C>G	p.Leu1356Val	p.L1356V	ENST00000296474	NM_002447.2	1356	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	317	581	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0050065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	281	558	0	ENST00000269305.4:c.375+2T>C		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
CD276	80381	MSKCC	GRCh37	15	73996771	73996771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	334	431	0	ENST00000318443.5:c.1327C>T	p.Pro443Ser	p.P443S	ENST00000318443	NM_001024736.1	443	Ccc/Tcc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652195	36652195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1279	102	751	3	ENST00000244741.5:c.317C>T	p.Ala106Val	p.A106V	ENST00000244741	NM_000389.4	106	gCa/gTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971049	21971060	+	inframe_deletion	In_Frame_Del	DEL	CCGCGCCCCGGC	CCGCGCCCCGGC	-			P-0050065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	227	575	0	ENST00000304494.5:c.298_309del	p.Ala100_Arg103del	p.A100_R103del	ENST00000304494	NM_000077.4	100	GCCGGGGCGCGG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971049	21971060	+	inframe_deletion	In_Frame_Del	DEL	CCGCGCCCCGGC	CCGCGCCCCGGC	-			P-0050065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	227	575	0	ENST00000304494.5:c.298_309del	p.Ala100_Arg103del	p.A100_R103del	ENST00000304494	NM_000077.4	100	GCCGGGGCGCGG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971049	21971060	+	inframe_deletion	In_Frame_Del	DEL	CCGCGCCCCGGC	CCGCGCCCCGGC	-			P-0050065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	227	575	0	ENST00000304494.5:c.298_309del	p.Ala100_Arg103del	p.A100_R103del	ENST00000304494	NM_000077.4	100	GCCGGGGCGCGG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974700	21974701	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0050065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	184	466	0	ENST00000304494.5:c.126_127del	p.Asn42LysfsTer77	p.N42Kfs*77	ENST00000304494	NM_000077.4	42	aaTAgt/aagt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	107	379	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	135	528	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	156	750	1	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	87	378	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	150	730	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	22	274	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	48	219	0	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	28	270	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143130120	143130120	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	106	438	0	ENST00000262992.4:c.896delA	p.Asn299MetfsTer10	p.N299Mfs*10	ENST00000262992	NM_001101669.1	299	aAt/at																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	120	512	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136984	64136984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	81	682	2	ENST00000334205.4:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000334205	NM_003942.2	499	Cgg/Tgg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069059	5069060	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	50	266	0	ENST00000381652.3:c.1370dup	p.Asn457LysfsTer2	p.N457Kfs*2	ENST00000381652	NM_004972.3	455	aca/acAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843495	3843495	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	127	513	0	ENST00000262367.5:c.1108C>T	p.Arg370Ter	p.R370*	ENST00000262367	NM_004380.2	370	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262742	16262742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	98	362	1	ENST00000375759.3:c.10007G>A	p.Arg3336Gln	p.R3336Q	ENST00000375759	NM_015001.2	3336	cGg/cAg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533760	63533760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	157	624	0	ENST00000307078.5:c.1394G>A	p.Arg465His	p.R465H	ENST00000307078	NM_004655.3	465	cGc/cAc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10249230	10249230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	130	620	0	ENST00000340748.4:c.3952G>A	p.Ala1318Thr	p.A1318T	ENST00000340748		1318	Gcg/Acg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405827	157405827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	108	461	0	ENST00000346085.5:c.2069C>T	p.Thr690Met	p.T690M	ENST00000346085	NM_020732.3	690	aCg/aTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877349	40877349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	119	466	0	ENST00000373198.4:c.2347G>A	p.Val783Met	p.V783M	ENST00000373198	NM_133170.3	783	Gtg/Atg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856469	111856469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	119	413	1	ENST00000341259.2:c.520G>A	p.Ala174Thr	p.A174T	ENST00000341259	NM_005475.2	174	Gcc/Acc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207633	2207633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	194	680	1	ENST00000398665.3:c.917C>T	p.Thr306Met	p.T306M	ENST00000398665	NM_032482.2	306	aCg/aTg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797268	32797268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	171	745	1	ENST00000374899.4:c.1841G>A	p.Arg614His	p.R614H	ENST00000374899	NM_018833.2	614	cGt/cAt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115275302	115275302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	151	508	0	ENST00000438362.2:c.1111C>T	p.Arg371Cys	p.R371C	ENST00000438362	NM_001242891.1	371	Cgt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273278	55273278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	128	470	0	ENST00000275493.2:c.3601G>A	p.Ala1201Thr	p.A1201T	ENST00000275493	NM_005228.3	1201	Gcg/Acg																																																																														
CCND1	595	MSKCC	GRCh37	11	69462783	69462783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	132	610	0	ENST00000227507.2:c.596C>T	p.Pro199Leu	p.P199L	ENST00000227507	NM_053056.2	199	cCg/cTg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741394	145741394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	244	865	0	ENST00000428558.2:c.1109G>A	p.Arg370His	p.R370H	ENST00000428558	NM_004260.3	370	cGt/cAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42003191	42003191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	142	465	0	ENST00000219905.7:c.2728C>T	p.Arg910Ter	p.R910*	ENST00000219905	NM_001164273.1	910	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528658	157528658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	147	556	0	ENST00000346085.5:c.6383G>A	p.Arg2128Gln	p.R2128Q	ENST00000346085	NM_020732.3	2128	cGa/cAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42019410	42019410	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	146	438	0	ENST00000219905.7:c.3463C>T	p.Arg1155Ter	p.R1155*	ENST00000219905	NM_001164273.1	1155	Cga/Tga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350234	89350234	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	173	671	0	ENST00000301030.4:c.2716C>T	p.Arg906Ter	p.R906*	ENST00000301030	NM_001256183.1	906	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176687121	176687121	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	110	441	0	ENST00000439151.2:c.5098C>T	p.Arg1700Ter	p.R1700*	ENST00000439151	NM_022455.4	1700	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120469232	120469232	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	120	398	0	ENST00000256646.2:c.3895C>T	p.Arg1299Trp	p.R1299W	ENST00000256646	NM_024408.3	1299	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56494872	56494872	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112651994		P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	137	522	1	ENST00000267101.3:c.3229C>T	p.Arg1077Trp	p.R1077W	ENST00000267101	NM_001982.3	1077	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418643	49418643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	145	549	0	ENST00000301067.7:c.15871G>A	p.Glu5291Lys	p.E5291K	ENST00000301067	NM_003482.3	5291	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104636	69104636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	143	581	0	ENST00000288368.4:c.4480C>T	p.Arg1494Cys	p.R1494C	ENST00000288368	NM_024870.2	1494	Cgc/Tgc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988217	36988217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	149	459	0	ENST00000354822.5:c.436G>A	p.Ala146Thr	p.A146T	ENST00000354822	NM_001079668.2	146	Gcc/Acc																																																																														
KIT	3815	MSKCC	GRCh37	4	55602911	55602911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	108	377	1	ENST00000288135.5:c.2621C>T	p.Pro874Leu	p.P874L	ENST00000288135	NM_000222.2	874	cCg/cTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828497	72828497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	175	588	0	ENST00000268489.5:c.8084G>A	p.Arg2695Gln	p.R2695Q	ENST00000268489	NM_006885.3	2695	cGg/cAg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957482	1957482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	161	625	0	ENST00000382891.5:c.2581G>A	p.Glu861Lys	p.E861K	ENST00000382891	NM_133335.3	861	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589892	212589892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	131	502	1	ENST00000342788.4:c.650G>A	p.Cys217Tyr	p.C217Y	ENST00000342788	NM_005235.2	217	tGt/tAt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662351	67662351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	131	512	1	ENST00000264010.4:c.1597C>T	p.Arg533Cys	p.R533C	ENST00000264010	NM_006565.3	533	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212423	5212423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	162	762	0	ENST00000357368.4:c.4694C>T	p.Thr1565Met	p.T1565M	ENST00000357368	NM_002850.3	1565	aCg/aTg																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841268	15841268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	127	426	1	ENST00000307771.7:c.1352G>A	p.Arg451His	p.R451H	ENST00000307771	NM_005089.3	451	cGc/cAc																																																																														
STK19	8859	MSKCC	GRCh37	6	31947213	31947213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	118	589	1	ENST00000375331.2:c.686G>A	p.Arg229Gln	p.R229Q	ENST00000375331	NM_004197.1	229	cGa/cAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212615400	212615400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	118	423	1	ENST00000342788.4:c.586C>T	p.Arg196Cys	p.R196C	ENST00000342788	NM_005235.2	196	Cgt/Tgt																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46511680	46511680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	144	434	0	ENST00000262741.5:c.1097T>C	p.Val366Ala	p.V366A	ENST00000262741	NM_003629.3	366	gTa/gCa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332696	65332696	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	82	387	0	ENST00000342505.4:c.843C>G	p.Tyr281Ter	p.Y281*	ENST00000342505	NM_002227.2	281	taC/taG																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612884	228612884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	174	637	0	ENST00000366696.1:c.143C>T	p.Ala48Val	p.A48V	ENST00000366696	NM_003493.2	48	gCg/gTg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201491	67201491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	170	742	1	ENST00000312629.5:c.932G>A	p.Arg311Gln	p.R311Q	ENST00000312629	NM_003952.2	311	cGg/cAg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201672	67201672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	132	673	0	ENST00000312629.5:c.973C>A	p.His325Asn	p.H325N	ENST00000312629	NM_003952.2	325	Cat/Aat																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416684	416684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	101	363	0	ENST00000399788.2:c.3866G>A	p.Arg1289Gln	p.R1289Q	ENST00000399788	NM_001042603.1	1289	cGa/cAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211656	46211656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	53	229	0	ENST00000334344.6:c.622G>A	p.Gly208Arg	p.G208R	ENST00000334344	NM_152641.2	208	Ggg/Agg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445893	49445893	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	215	809	0	ENST00000301067.7:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000301067	NM_003482.3	525	Gag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133209313	133209313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	178	721	0	ENST00000320574.5:c.6073G>A	p.Val2025Met	p.V2025M	ENST00000320574	NM_006231.2	2025	Gtg/Atg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28602373	28602373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	127	417	1	ENST00000241453.7:c.1995G>A	p.Met665Ile	p.M665I	ENST00000241453	NM_004119.2	665	atG/atA																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68878231	68878231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	74	307	0	ENST00000487270.1:c.944C>T	p.Ser315Leu	p.S315L	ENST00000487270	NM_133509.3	315	tCa/tTa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712857	43712857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	141	636	0	ENST00000382044.4:c.4327C>T	p.Arg1443Cys	p.R1443C	ENST00000382044	NM_001141980.1	1443	Cgt/Tgt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14015970	14015970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	79	314	0	ENST00000311895.7:c.290G>A	p.Arg97His	p.R97H	ENST00000311895	NM_005236.2	97	cGc/cAc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30133215	30133215	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	155	619	0	ENST00000263025.4:c.283T>G	p.Phe95Val	p.F95V	ENST00000263025	NM_002746.2	95	Ttc/Gtc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654631	67654631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	136	476	0	ENST00000264010.4:c.1118A>G	p.His373Arg	p.H373R	ENST00000264010	NM_006565.3	373	cAt/cGt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89337293	89337293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	150	420	0	ENST00000301030.4:c.7738G>A	p.Asp2580Asn	p.D2580N	ENST00000301030	NM_001256183.1	2580	Gac/Aac																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687255	37687255	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	135	552	1	ENST00000447079.4:c.4159A>G	p.Ser1387Gly	p.S1387G	ENST00000447079	NM_015083.1	1387	Agc/Ggc																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66524000	66524000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	29	197	0	ENST00000358598.2:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000358598	NM_212471.2	243	cGg/cAg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1623951	1623951	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	146	558	1	ENST00000344749.5:c.548C>T	p.Ser183Leu	p.S183L	ENST00000344749	NM_001136139.2	183	tCg/tTg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257875	19257875	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	213	844	0	ENST00000162023.5:c.511C>T	p.Arg171Ter	p.R171*	ENST00000162023		171	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224559	36224559	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	71	788	0	ENST00000222270.7:c.7024del	p.Glu2342SerfsTer97	p.E2342Sfs*97	ENST00000222270	NM_014727.1	2341	Ggg/gg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026498	48026498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	106	406	0	ENST00000234420.5:c.1376C>A	p.Ser459Tyr	p.S459Y	ENST00000234420	NM_000179.2	459	tCt/tAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033699	48033715	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCTTGCTAATCTCCC	AGGCTTGCTAATCTCCC	-			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	68	366	0	ENST00000234420.5:c.3912_3928del	p.Leu1305GlyfsTer8	p.L1305Gfs*8	ENST00000234420	NM_000179.2	1304	AGGCTTGCTAATCTCCCa/a																																																																														
ATR	545	MSKCC	GRCh37	3	142180907	142180907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	49	277	0	ENST00000350721.4:c.7067G>A	p.Arg2356His	p.R2356H	ENST00000350721	NM_001184.3	2356	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917489	178917489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	69	298	0	ENST00000263967.3:c.364G>A	p.Gly122Ser	p.G122S	ENST00000263967	NM_006218.2	122	Ggc/Agc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35861040	35861040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	26	405	0	ENST00000303115.3:c.169T>C	p.Cys57Arg	p.C57R	ENST00000303115	NM_002185.3	57	Tgt/Cgt																																																																														
ATRX	546	MSKCC	GRCh37	X	76939105	76939105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	29	420	2	ENST00000373344.5:c.1643G>A	p.Gly548Asp	p.G548D	ENST00000373344	NM_000489.3	548	gGc/gAc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195105	123195105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	134	418	0	ENST00000218089.9:c.1448G>A	p.Ser483Asn	p.S483N	ENST00000218089	NM_001042749.1	483	aGc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	538	710	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	290	317	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	706	792	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120554403	120554403	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	45	117	0	ENST00000229340.5:c.52G>A	p.Gly18Ser	p.G18S	ENST00000229340	NM_006861.6	18	Ggt/Agt																																																																														
ALK	238	MSKCC	GRCh37	2	29498304	29498304	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	55	687	0	ENST00000389048.3:c.1876G>C	p.Asp626His	p.D626H	ENST00000389048	NM_004304.4	626	Gac/Cac																																																																														
HGF	3082	MSKCC	GRCh37	7	81340827	81340827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	100	229	0	ENST00000222390.5:c.1414G>C	p.Asp472His	p.D472H	ENST00000222390	NM_000601.4	472	Gat/Cat																																																																														
NF1	4763	MSKCC	GRCh37	17	29559842	29559842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	170	386	0	ENST00000358273.4:c.3439C>T	p.Leu1147Phe	p.L1147F	ENST00000358273	NM_001042492.2	1147	Ctt/Ttt																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317572	1317572	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	99	367	0				ENST00000381566																																																																																	
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	227	525	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	82	403	0	ENST00000371953.3:c.380G>A	p.Gly127Glu	p.G127E	ENST00000371953	NM_000314.4	127	gGa/gAa																																																																														
MET	4233	MSKCC	GRCh37	7	116436012	116436012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	185	717	1	ENST00000397752.3:c.4007G>A	p.Arg1336Gln	p.R1336Q	ENST00000397752	NM_000245.2	1336	cGg/cAg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093455	30093455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	12	322	0	ENST00000331968.5:c.1808G>A	p.Arg603His	p.R603H	ENST00000331968	NM_002742.2	603	cGt/cAt																																																																														
KDR	3791	MSKCC	GRCh37	4	55953820	55953820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	141	648	0	ENST00000263923.4:c.3616G>A	p.Glu1206Lys	p.E1206K	ENST00000263923	NM_002253.2	1206	Gaa/Aaa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437443	110437443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	416	499	0	ENST00000375856.3:c.958C>T	p.Pro320Ser	p.P320S	ENST00000375856	NM_003749.2	320	Ccc/Tcc																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26021061	26021061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	276	627	2	ENST00000357647.3:c.344C>T	p.Ala115Val	p.A115V	ENST00000357647	NM_003529.2	115	gCc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	289	274	1				ENST00000310581	NM_198253.2																																																																																
PPARG	5468	MSKCC	GRCh37	3	12422928	12422928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	45	658	0	ENST00000287820.6:c.418C>T	p.Arg140Cys	p.R140C	ENST00000287820	NM_015869.4	140	Cgt/Tgt																																																																														
IL10	3586	MSKCC	GRCh37	1	206944292	206944292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	298	630	1	ENST00000423557.1:c.338G>A	p.Gly113Glu	p.G113E	ENST00000423557	NM_000572.2	113	gGg/gAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032572	47032572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	448	405	1	ENST00000329236.7:c.247C>T	p.Arg83Trp	p.R83W	ENST00000329236	NM_001204466.1	83	Cgg/Tgg																																																																														
MITF	4286	MSKCC	GRCh37	3	69928517	69928517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	135	722	0	ENST00000352241.4:c.337C>T	p.Pro113Ser	p.P113S	ENST00000352241	NM_198159.2	113	Ccg/Tcg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176118171	176118171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	52	363	0	ENST00000367669.3:c.802C>T	p.Leu268Phe	p.L268F	ENST00000367669	NM_022457.5	268	Ctc/Ttc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195468	102195468	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	90	546	0	ENST00000263464.3:c.228G>A	p.Trp76Ter	p.W76*	ENST00000263464	NM_001165.4	76	tgG/tgA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377307	118377307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	137	418	0	ENST00000534358.1:c.10700C>T	p.Ser3567Phe	p.S3567F	ENST00000534358	NM_005933.3	3567	tCt/tTt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060608	38060608	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	316	890	0	ENST00000250448.2:c.1381C>T	p.Gln461Ter	p.Q461*	ENST00000250448	NM_004496.3	461	Caa/Taa																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217003	7217003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	221	686	0	ENST00000380728.2:c.518G>A	p.Gly173Glu	p.G173E	ENST00000380728		173	gGg/gAg																																																																														
MITF	4286	MSKCC	GRCh37	3	69928469	69928469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	146	761	0	ENST00000352241.4:c.289G>A	p.Ala97Thr	p.A97T	ENST00000352241	NM_198159.2	97	Gcc/Acc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013732	170013732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	58	462	0	ENST00000295797.4:c.1451C>T	p.Ser484Phe	p.S484F	ENST00000295797	NM_002740.5	484	tCt/tTt																																																																														
TP63	8626	MSKCC	GRCh37	3	189582025	189582025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	34	448	0	ENST00000264731.3:c.584C>T	p.Ser195Phe	p.S195F	ENST00000264731	NM_003722.4	195	tCc/tTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670602	30670602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	302	670	0	ENST00000376406.3:c.5918C>T	p.Pro1973Leu	p.P1973L	ENST00000376406	NM_014641.2	1973	cCt/cTt																																																																														
SESN1	27244	MSKCC	GRCh37	6	109309847	109309847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	61	533	0	ENST00000436639.2:c.1468C>T	p.Arg490Cys	p.R490C	ENST00000436639	NM_014454.2	490	Cgt/Tgt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426893	6426893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	151	554	0	ENST00000356142.4:c.86C>A	p.Pro29His	p.P29H	ENST00000356142	NM_018890.3	29	cCt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945021	151945021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	20	90	0	ENST00000262189.6:c.2498G>A	p.Arg833Lys	p.R833K	ENST00000262189	NM_170606.2	833	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0050085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	114	639	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	81	533	0	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127933378	127933378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	38	533	0	ENST00000373547.4:c.157G>A	p.Asp53Asn	p.D53N	ENST00000373547	NM_002721.4	53	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425229	49425229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	143	847	0	ENST00000301067.7:c.13259G>A	p.Arg4420Gln	p.R4420Q	ENST00000301067	NM_003482.3	4420	cGg/cAg																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944833	31944833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	82	671	1	ENST00000340398.3:c.268G>A	p.Gly90Ser	p.G90S	ENST00000340398	NM_001013699.2	90	Ggt/Agt																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128347904	128347904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	60	757	1	ENST00000265960.3:c.601G>T	p.Ala201Ser	p.A201S	ENST00000265960	NM_001006617.1	201	Gcc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	262	827	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099878	27099890	+	frameshift_variant	Frame_Shift_Del	DEL	AACGGCGGGATGG	AACGGCGGGATGG	-			P-0050086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	120	676	0	ENST00000324856.7:c.3757_3769del	p.Asn1253ValfsTer12	p.N1253Vfs*12	ENST00000324856	NM_006015.4	1253	AACGGCGGGATGGgt/gt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133800	55133800	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	57	554	0	ENST00000257290.5:c.1013A>C	p.Glu338Ala	p.E338A	ENST00000257290	NM_006206.4	338	gAg/gCg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	538	442	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757428	40757428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	255	793	0	ENST00000373198.4:c.2870C>T	p.Pro957Leu	p.P957L	ENST00000373198	NM_133170.3	957	cCg/cTg																																																																														
CCND3	896	MSKCC	GRCh37	6	41908122	41908122	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3218089		P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	382	825	0	ENST00000372991.4:c.400C>T	p.Pro134Ser	p.P134S	ENST00000372991	NM_001760.3	134	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274198	10274198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	209	695	0	ENST00000330684.3:c.71G>A	p.Ser24Asn	p.S24N	ENST00000330684	NM_001134407.1	24	aGc/aAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948653	71948653	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147991973		P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	327	1043	0	ENST00000298229.2:c.3365C>T	p.Ser1122Leu	p.S1122L	ENST00000298229	NM_001567.3	1122	tCg/tTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30095735	30095735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	208	416	0	ENST00000331968.5:c.1753C>T	p.Pro585Ser	p.P585S	ENST00000331968	NM_002742.2	585	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	175	322	0				ENST00000310581	NM_198253.2																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156834541	156834542	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	542	971	2	ENST00000524377.1:c.309_310delinsTT	p.Arg104Cys	p.R104C	ENST00000524377	NM_002529.3	103	ctCCgt/ctTTgt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28597582	28597582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	302	602	0	ENST00000241453.7:c.2323G>A	p.Glu775Lys	p.E775K	ENST00000241453	NM_004119.2	775	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100919	41100919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	185	712	0	ENST00000373198.4:c.1437G>T	p.Gln479His	p.Q479H	ENST00000373198	NM_133170.3	479	caG/caT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419946	41419946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	46	767	0	ENST00000373198.4:c.375G>T	p.Lys125Asn	p.K125N	ENST00000373198	NM_133170.3	125	aaG/aaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419968	41419968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	127	760	1	ENST00000373198.4:c.353G>A	p.Gly118Glu	p.G118E	ENST00000373198	NM_133170.3	118	gGg/gAg																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790768	89790768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	148	967	1	ENST00000336032.3:c.155C>T	p.Pro52Leu	p.P52L	ENST00000336032	NM_006813.2	52	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662708	117662708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	189	501	0	ENST00000368508.3:c.4757G>A	p.Gly1586Glu	p.G1586E	ENST00000368508	NM_002944.2	1586	gGa/gAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53230898	53230898	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	288	927	0	ENST00000375401.3:c.1895A>T	p.His632Leu	p.H632L	ENST00000375401	NM_004187.3	632	cAc/cTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584583	52584583	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	191	622	0	ENST00000394830.3:c.4430del	p.Pro1477LeufsTer12	p.P1477Lfs*12	ENST00000394830	NM_018313.4	1477	cCt/ct																																																																														
CYLD	1540	MSKCC	GRCh37	16	50830354	50830354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	168	483	1	ENST00000398568.2:c.2797C>T	p.Arg933Ter	p.R933*	ENST00000398568	NM_001042412.1	933	Cga/Tga																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222359	39222359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	222	577	0	ENST00000402219.2:c.3251G>C	p.Arg1084Thr	p.R1084T	ENST00000402219	NM_005633.3	1084	aGa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	239	664	1	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	274	718	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952073	178952073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	173	414	0	ENST00000263967.3:c.3128T>C	p.Met1043Thr	p.M1043T	ENST00000263967	NM_006218.2	1043	aTg/aCg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	89	293	0	ENST00000281708.4:c.1436G>T	p.Arg479Leu	p.R479L	ENST00000281708	NM_033632.3	479	cGa/cTa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696404	47696404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	225	541	0	ENST00000347630.2:c.419A>G	p.Asp140Gly	p.D140G	ENST00000347630	NM_001007230.1	140	gAt/gGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	37	367	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	151	469	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	202	635	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	97	419	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	91	360	0	ENST00000257430.4:c.1312+1G>A		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																															
FGF3	2248	MSKCC	GRCh37	11	69625281	69625281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35983315		P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	139	754	2	ENST00000334134.2:c.512G>A	p.Arg171His	p.R171H	ENST00000334134	NM_005247.2	171	cGc/cAc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798320	45798320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	155	700	1	ENST00000372115.3:c.574G>A	p.Glu192Lys	p.E192K	ENST00000372115	NM_001048171.1	192	Gag/Aag																																																																														
MPL	4352	MSKCC	GRCh37	1	43812205	43812205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	253	532	0	ENST00000372470.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000372470	NM_005373.2	357	cGa/cAa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326765	62326765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	48	899	0	ENST00000508582.2:c.3656C>T	p.Ala1219Val	p.A1219V	ENST00000508582		1219	gCg/gTg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643679	38643680	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0050100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	251	575	0	ENST00000299084.4:c.1151_1152del	p.Glu384GlyfsTer5	p.E384Gfs*5	ENST00000299084	NM_152594.2	383	tcAGag/tcag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660547	227660547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	295	726	1	ENST00000305123.5:c.2908C>T	p.Pro970Ser	p.P970S	ENST00000305123	NM_005544.2	970	Ccc/Tcc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749432	41749432	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	206	536	0	ENST00000226382.2:c.363C>G	p.His121Gln	p.H121Q	ENST00000226382	NM_003924.3	121	caC/caG																																																																														
KIT	3815	MSKCC	GRCh37	4	55593613	55593613	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	274	368	0	ENST00000288135.5:c.1679T>A	p.Val560Asp	p.V560D	ENST00000288135	NM_000222.2	560	gTt/gAt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115280672	115280672	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	271	431	0	ENST00000438362.2:c.359C>A	p.Ser120Ter	p.S120*	ENST00000438362	NM_001242891.1	120	tCa/tAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55602900	55602900	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0050110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	290	342	2	ENST00000288135.5:c.2610T>G	p.Tyr870Ter	p.Y870*	ENST00000288135	NM_000222.2	870	taT/taG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	161	349	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	158	360	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	178	352	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	12	548	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	20	273	0	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	76	418	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910661	32910662	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	15	317	0	ENST00000380152.3:c.2175dup	p.Val726SerfsTer25	p.V726Sfs*25	ENST00000380152		723	-/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952142	178952142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	16	212	0	ENST00000263967.3:c.3197C>T	p.Ala1066Val	p.A1066V	ENST00000263967	NM_006218.2	1066	gCa/gTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	15	429	2	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	58	472	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																														
ATM	472	MSKCC	GRCh37	11	108196880	108196880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	90	333	1	ENST00000278616.4:c.6908del	p.Lys2303ArgfsTer7	p.K2303Rfs*7	ENST00000278616	NM_000051.3	2301	gcA/gc																																																																														
CDH1	999	MSKCC	GRCh37	16	68862138	68862139	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	178	469	0	ENST00000261769.5:c.2231dup	p.Glu745ArgfsTer3	p.E745Rfs*3	ENST00000261769	NM_004360.3	742	-/C																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412627	139412627	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	279	680	0	ENST00000277541.6:c.1217del	p.Gly406AlafsTer225	p.G406Afs*225	ENST00000277541	NM_017617.3	406	gGc/gc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500832	8500832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	26	420	1	ENST00000356435.5:c.2050C>T	p.Arg684Trp	p.R684W	ENST00000356435		684	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	185	637	1	ENST00000269305.4:c.329G>A	p.Arg110His	p.R110H	ENST00000269305	NM_001126112.2	110	cGt/cAt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030658	47030658	+	intron_variant	Intron	SNP	G	G	A			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	21	582	0	ENST00000329236.7:c.201+1761G>A		p.*67*	ENST00000329236	NM_001204466.1																																																																																
SOX17	64321	MSKCC	GRCh37	8	55371799	55371820	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCGCGCTGGGCCCCGAG	GGCGGCCGCGCTGGGCCCCGAG	-			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	208	219	0	ENST00000297316.4:c.499_520del	p.Leu167TrpfsTer213	p.L167Wfs*213	ENST00000297316	NM_022454.3	163	caGGCGGCCGCGCTGGGCCCCGAG/ca																																																																														
CCND1	595	MSKCC	GRCh37	11	69466003	69466038	+	inframe_deletion	In_Frame_Del	DEL	GTGGACCTGGCTTGCACACCCACCGACGTGCGGGAC	GTGGACCTGGCTTGCACACCCACCGACGTGCGGGAC	-			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	101	657	0	ENST00000227507.2:c.847_882del	p.Leu283_Asp294del	p.L283_D294del	ENST00000227507	NM_053056.2	281	GTGGACCTGGCTTGCACACCCACCGACGTGCGGGAC/-																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44937657	44937657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	58	299	2	ENST00000377967.4:c.2845C>T	p.Arg949Cys	p.R949C	ENST00000377967	NM_021140.2	949	Cgt/Tgt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	54	626	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	179	678	3	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227036	53227036	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	31	402	2	ENST00000375401.3:c.2539C>T	p.Gln847Ter	p.Q847*	ENST00000375401	NM_004187.3	847	Cag/Tag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395053	139395053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	53	623	1	ENST00000277541.6:c.5885G>A	p.Arg1962His	p.R1962H	ENST00000277541	NM_017617.3	1962	cGc/cAc																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907687	111907687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	146	348	0	ENST00000393256.3:c.461G>A	p.Arg154His	p.R154H	ENST00000393256	NM_006538.4	154	cGt/cAt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941274	71941274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	35	712	1	ENST00000298229.2:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000298229	NM_001567.3	350	cGg/cAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286764	212286764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	42	346	0	ENST00000342788.4:c.2932G>A	p.Ala978Thr	p.A978T	ENST00000342788	NM_005235.2	978	Gct/Act																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216184	36216184	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	106	637	2	ENST00000222270.7:c.3596del	p.Gly1199AlafsTer156	p.G1199Afs*156	ENST00000222270	NM_014727.1	1198	Ggg/gg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258894	16258894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	54	513	0	ENST00000375759.3:c.6164delC	p.Pro2055LeufsTer9	p.P2055Lfs*9	ENST00000375759	NM_015001.2	2053	aaC/aa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057717	180057717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	39	674	2	ENST00000261937.6:c.238delG	p.Val80TrpfsTer53	p.V80Wfs*53	ENST00000261937	NM_182925.4	80	Gtg/tg																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250692	26250692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	31	560	0	ENST00000446824.2:c.142G>A	p.Ala48Thr	p.A48T	ENST00000446824	NM_021018.2	48	Gcc/Acc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713882	30713882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	43	545	0	ENST00000359013.4:c.1282C>T	p.Arg428Cys	p.R428C	ENST00000359013	NM_001024847.2	428	Cgt/Tgt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332883	65332883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	11	190	0	ENST00000342505.4:c.656G>A	p.Arg219Gln	p.R219Q	ENST00000342505	NM_002227.2	219	cGa/cAa																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246490641	246490641	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	41	228	1	ENST00000388985.4:c.395-2del		p.X132_splice	ENST00000388985		132																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074348	8074349	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	427	306	1	ENST00000377482.5:c.310_311del	p.Gly104ThrfsTer3	p.G104Tfs*3	ENST00000377482	NM_018948.3	104	GGa/a																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105581	27105581	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	513	440	0	ENST00000324856.7:c.5192T>G	p.Leu1731Ter	p.L1731*	ENST00000324856	NM_006015.4	1731	tTa/tGa																																																																														
STK40	83931	MSKCC	GRCh37	1	36824372	36824372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	129	488	0	ENST00000373129.3:c.164G>T	p.Arg55Met	p.R55M	ENST00000373129	NM_032017.1	55	aGg/aTg																																																																														
C1orf147	574431	MSKCC	GRCh37	1	206666385	206666385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	152	575	0	ENST00000367119.1:c.149C>T	p.Ala50Val	p.A50V	ENST00000367119		50	gCg/gTg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061129	38061129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	20	250	0	ENST00000250448.2:c.860C>T	p.Ala287Val	p.A287V	ENST00000250448	NM_004496.3	287	gCc/gTc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12627232	12627232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	54	382	2	ENST00000251849.4:c.1484G>A	p.Arg495His	p.R495H	ENST00000251849	NM_002880.3	495	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917498	178917499	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	41	261	0	ENST00000263967.3:c.378_379del	p.Cys126Ter	p.C126*	ENST00000263967	NM_006218.2	125	GTg/g																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748252	41748252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	73	514	0	ENST00000226382.2:c.517G>A	p.Gly173Ser	p.G173S	ENST00000226382	NM_003924.3	173	Ggc/Agc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131976374	131976374	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	91	394	0	ENST00000265335.6:c.3629C>A	p.Ser1210Ter	p.S1210*	ENST00000265335		1210	tCa/tAa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288803	33288803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	114	395	0	ENST00000374542.5:c.749G>A	p.Gly250Asp	p.G250D	ENST00000374542	NM_001141970.1	250	gGc/gAc																																																																														
PIM1	5292	MSKCC	GRCh37	6	37138386	37138386	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	36	422	0	ENST00000373509.5:c.35T>C	p.Leu12Pro	p.L12P	ENST00000373509	NM_002648.3	12	cTg/cCg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117632241	117632241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	17	393	0	ENST00000368508.3:c.6175C>A	p.Leu2059Met	p.L2059M	ENST00000368508	NM_002944.2	2059	Ctg/Atg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450351	50450351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	72	530	0	ENST00000331340.3:c.535A>G	p.Asn179Asp	p.N179D	ENST00000331340	NM_006060.4	179	Aac/Gac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539564	187539564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	88	379	1	ENST00000441802.2:c.8176C>T	p.Arg2726Ter	p.R2726*	ENST00000441802	NM_005245.3	2726	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579356	7579356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	335	666	1	ENST00000269305.4:c.331C>A	p.Leu111Met	p.L111M	ENST00000269305	NM_001126112.2	111	Ctg/Atg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935418	36935418	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	192	687	2	ENST00000361632.4:c.1309G>T	p.Ala437Ser	p.A437S	ENST00000361632		437	Gcc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	83	452	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134566	2134566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	141	841	0	ENST00000219476.3:c.4343G>C	p.Ser1448Thr	p.S1448T	ENST00000219476	NM_000548.3	1448	aGc/aCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577152	7577154	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACC	ACC	-			P-0050115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	48	513	0	ENST00000269305.4:c.784_786delGGT	p.Gly262del	p.G262del	ENST00000269305	NM_001126112.2	262	GGT/-																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	78	326	0	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992136	11992136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	163	499	0	ENST00000396373.4:c.226G>A	p.Glu76Lys	p.E76K	ENST00000396373	NM_001987.4	76	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	115	224	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005093	150005093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	108	446	0	ENST00000253339.5:c.1132C>G	p.Leu378Val	p.L378V	ENST00000253339		378	Ctg/Gtg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651138	206651138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	88	761	0	ENST00000367120.3:c.748C>T	p.Gln250Ter	p.Q250*	ENST00000367120	NM_014002.3	250	Cag/Tag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856345	45856345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	176	646	1	ENST00000391945.4:c.1827C>A	p.Asp609Glu	p.D609E	ENST00000391945	NM_000400.3	609	gaC/gaA																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47600619	47600619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	89	340	0	ENST00000263735.4:c.94T>C	p.Tyr32His	p.Y32H	ENST00000263735	NM_002354.2	32	Tac/Cac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125431	47125431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	87	433	0	ENST00000409792.3:c.5839A>G	p.Ser1947Gly	p.S1947G	ENST00000409792	NM_014159.6	1947	Agt/Ggt																																																																														
TET2	54790	MSKCC	GRCh37	4	106156393	106156393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	63	348	0	ENST00000380013.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000380013	NM_001127208.2	432	Gaa/Aaa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149452871	149452871	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	122	516	0	ENST00000286301.3:c.1075A>T	p.Thr359Ser	p.T359S	ENST00000286301	NM_005211.3	359	Aca/Tca																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519547	137519547	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	84	393	0	ENST00000367739.4:c.1091A>G	p.Asp364Gly	p.D364G	ENST00000367739	NM_000416.2	364	gAc/gGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0050119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	148	420	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962846	2962846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	304	734	1	ENST00000396946.4:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000396946	NM_032415.4	688	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711350	114711350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	119	260	0	ENST00000543371.1:c.365C>T	p.Ser122Leu	p.S122L	ENST00000543371	NM_001198531.1	122	tCg/tTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	182	306	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005006	150005006	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	204	429	0	ENST00000253339.5:c.1219C>T	p.Gln407Ter	p.Q407*	ENST00000253339		407	Cag/Tag																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099199	4099199	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	176	606	1	ENST00000262948.5:c.919G>A	p.Gly307Ser	p.G307S	ENST00000262948	NM_030662.3	307	Ggt/Agt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665424	176665424	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	217	439	0	ENST00000439151.2:c.4108del	p.Gln1370SerfsTer2	p.Q1370Sfs*2	ENST00000439151	NM_022455.4	1370	Cag/ag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176700678	176700678	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	192	360	0	ENST00000439151.2:c.5515C>T	p.Gln1839Ter	p.Q1839*	ENST00000439151	NM_022455.4	1839	Cag/Tag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004798	150004798	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	191	485	0	ENST00000253339.5:c.1427C>G	p.Ser476Cys	p.S476C	ENST00000253339		476	tCt/tGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878769	151878770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCC			P-0050119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	154	441	0	ENST00000262189.6:c.6172_6175dup	p.Ser2059TrpfsTer13	p.S2059Wfs*13	ENST00000262189	NM_170606.2	2059	tca/tGGATca																																																																														
MED12	9968	MSKCC	GRCh37	X	70344150	70344150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	240	592	0	ENST00000374080.3:c.1886C>T	p.Pro629Leu	p.P629L	ENST00000374080		629	cCt/cTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70356480	70356480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	262	637	3	ENST00000374080.3:c.5375G>A	p.Arg1792His	p.R1792H	ENST00000374080		1792	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	95	508	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	28	349	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	108	1029	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430792	181430792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	44	1046	0	ENST00000325404.1:c.644C>A	p.Thr215Asn	p.T215N	ENST00000325404	NM_003106.3	215	aCc/aAc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71102882	71102882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	41	540	0	ENST00000318789.4:c.325C>T	p.Pro109Ser	p.P109S	ENST00000318789	NM_032682.5	109	Ccc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877393	40877393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	48	764	0	ENST00000373198.4:c.2303G>T	p.Gly768Val	p.G768V	ENST00000373198	NM_133170.3	768	gGc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426736	49426771	+	inframe_deletion	In_Frame_Del	DEL	GCTGCTGCTGCTGCTGAAGTTGCTGTTGCTGTTGCA	GCTGCTGCTGCTGCTGAAGTTGCTGTTGCTGTTGCA	-			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	17	389	0	ENST00000301067.7:c.11717_11752del	p.Leu3906_Gln3917del	p.L3906_Q3917del	ENST00000301067	NM_003482.3	3906	cTGCAACAGCAACAGCAACTTCAGCAGCAGCAGCAGCag/cag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863392	57863392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	91	1030	2	ENST00000228682.2:c.1487G>A	p.Arg496His	p.R496H	ENST00000228682	NM_005269.2	496	cGc/cAc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777132	9777132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	54	1032	0	ENST00000377346.4:c.896C>A	p.Pro299Gln	p.P299Q	ENST00000377346	NM_005026.3	299	cCg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056188	27056188	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	40	716	0	ENST00000324856.7:c.1184A>G	p.Tyr395Cys	p.Y395C	ENST00000324856	NM_006015.4	395	tAt/tGt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176132092	176132092	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	51	504	0	ENST00000367669.3:c.675G>C	p.Trp225Cys	p.W225C	ENST00000367669	NM_022457.5	225	tgG/tgC																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683388	88683388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	61	556	0	ENST00000372037.3:c.1511G>T	p.Trp504Leu	p.W504L	ENST00000372037	NM_004329.2	504	tGg/tTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719911	18719911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	19	474	0	ENST00000266497.5:c.3808A>T	p.Thr1270Ser	p.T1270S	ENST00000266497		1270	Aca/Tca																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434545	121434545	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	94	986	0	ENST00000257555.6:c.1309G>T	p.Gly437Cys	p.G437C	ENST00000257555		437	Ggc/Tgc																																																																														
ALK	238	MSKCC	GRCh37	2	29443580	29443580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	96	828	0	ENST00000389048.3:c.3637C>A	p.Pro1213Thr	p.P1213T	ENST00000389048	NM_004304.4	1213	Cct/Act																																																																														
BARD1	580	MSKCC	GRCh37	2	215646161	215646161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	40	547	0	ENST00000260947.4:c.437G>T	p.Trp146Leu	p.W146L	ENST00000260947	NM_000465.2	146	tGg/tTg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31388641	31388642	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	62	694	0	ENST00000328111.2:c.1908dup	p.Glu637Ter	p.E637*	ENST00000328111	NM_006892.3	636	att/aTtt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259271	89259271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	26	503	0	ENST00000336596.2:c.415C>A	p.Gln139Lys	p.Q139K	ENST00000336596	NM_005233.5	139	Cag/Aag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317572	1317572	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	20	323	1				ENST00000381566																																																																																	
ATRX	546	MSKCC	GRCh37	X	76888785	76888785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	29	580	0	ENST00000373344.5:c.5044G>C	p.Gly1682Arg	p.G1682R	ENST00000373344	NM_000489.3	1682	Ggc/Cgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76952065	76952065	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0050120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	15	393	0	ENST00000373344.5:c.370G>C	p.Gly124Arg	p.G124R	ENST00000373344	NM_000489.3	124	Ggt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	63	553	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0050121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	19	452	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	105	720	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	139	291	0	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65321210	65321220	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGCGTTTT	AGCAGCGTTTT	-			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	155	557	0	ENST00000342505.4:c.1620_1630del	p.Lys541ProfsTer15	p.K541Pfs*15	ENST00000342505	NM_002227.2	540	ctAAAACGCTGCTgc/ctgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906938	32906938	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	201	478	0	ENST00000380152.3:c.1324del	p.Ser442GlnfsTer18	p.S442Qfs*18	ENST00000380152		441	acT/ac																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434569	99434569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	305	688	0	ENST00000268035.6:c.656G>A	p.Cys219Tyr	p.C219Y	ENST00000268035	NM_000875.3	219	tGt/tAt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867697	45867697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	203	826	1	ENST00000391945.4:c.703G>A	p.Glu235Lys	p.E235K	ENST00000391945	NM_000400.3	235	Gag/Aag																																																																														
BCL6	604	MSKCC	GRCh37	3	187446992	187446992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	371	747	0	ENST00000232014.4:c.1201G>A	p.Gly401Ser	p.G401S	ENST00000232014	NM_001130845.1	401	Ggc/Agc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87549185	87549185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	237	525	0	ENST00000277120.3:c.1742A>G	p.Asp581Gly	p.D581G	ENST00000277120		581	gAc/gGc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913499		P-0050124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	33	332	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498374	89498374	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0050124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	17	203	0	ENST00000336596.2:c.2347-1G>A		p.X783_splice	ENST00000336596	NM_005233.5	783																																																																															
EGFR	1956	MSKCC	GRCh37	7	55223522	55223522	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	313	827	0	ENST00000275493.2:c.890-1G>T		p.X297_splice	ENST00000275493	NM_005228.3	297																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TCT			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	331	814	1	ENST00000275493.2:c.2303_2305delinsTCT	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTCTtg																																																																														
AR	367	MSKCC	GRCh37	X	66765076	66765076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761416673		P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	97	887	1	ENST00000374690.3:c.88G>A	p.Val30Met	p.V30M	ENST00000374690	NM_000044.3	30	Gtg/Atg																																																																														
ATM	472	MSKCC	GRCh37	11	108173601	108173601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	28	397	0	ENST00000278616.4:c.5341G>C	p.Asp1781His	p.D1781H	ENST00000278616	NM_000051.3	1781	Gac/Cac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248454	212248454	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	62	476	0	ENST00000342788.4:c.3813T>A	p.Asn1271Lys	p.N1271K	ENST00000342788	NM_005235.2	1271	aaT/aaA																																																																														
NF1	4763	MSKCC	GRCh37	17	29670099	29670099	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	344	624	0	ENST00000358273.4:c.7135G>T	p.Gly2379Ter	p.G2379*	ENST00000358273	NM_001042492.2	2379	Gga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41572489	41572489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	394	1072	0	ENST00000263253.7:c.5018G>A	p.Cys1673Tyr	p.C1673Y	ENST00000263253	NM_001429.3	1673	tGc/tAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056748	180056748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	428	1137	1	ENST00000261937.6:c.764G>T	p.Trp255Leu	p.W255L	ENST00000261937	NM_182925.4	255	tGg/tTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157511280	157511280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	79	661	0	ENST00000346085.5:c.3798G>A	p.Met1266Ile	p.M1266I	ENST00000346085	NM_020732.3	1266	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579474	7579475	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	252	922	3	ENST00000269305.4:c.212_213delinsT	p.Pro71LeufsTer52	p.P71Lfs*52	ENST00000269305	NM_001126112.2	71	cCC/cT																																																																														
ARAF	369	MSKCC	GRCh37	X	47430757	47430758	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0050125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	279	1001	0	ENST00000377045.4:c.1722_1723delinsA	p.Lys576ArgfsTer?	p.K576Rfs*?	ENST00000377045	NM_001654.4	574	ctCCcc/ctAcc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115252348	115252348	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	85	245	0	ENST00000369535.4:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000369535	NM_002524.4	98	Gag/Cag																																																																														
RET	5979	MSKCC	GRCh37	10	43609054	43609054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	209	644	2	ENST00000355710.3:c.1810G>A	p.Ala604Thr	p.A604T	ENST00000355710	NM_020975.4	604	Gct/Act																																																																														
ATM	472	MSKCC	GRCh37	11	108224493	108224493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	66	240	0	ENST00000278616.4:c.8672G>T	p.Gly2891Val	p.G2891V	ENST00000278616	NM_000051.3	2891	gGt/gTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443611	49443612	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AC			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	492	647	0	ENST00000301067.7:c.3759_3760delinsGT	p.Asp1253_Glu1254delinsGluTer	p.D1253_E1254delinsE*	ENST00000301067	NM_003482.3	1253	gaTGag/gaGTag																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484291	50484291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	466	600	0	ENST00000394963.4:c.1051C>T	p.Arg351Cys	p.R351C	ENST00000394963	NM_003076.4	351	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	369	618	0	ENST00000269305.4:c.490A>T	p.Lys164Ter	p.K164*	ENST00000269305	NM_001126112.2	164	Aag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627319	37627319	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142798057		P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	280	500	2	ENST00000447079.4:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000447079	NM_015083.1	412	Gca/Aca																																																																														
INSR	3643	MSKCC	GRCh37	19	7119553	7119553	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	279	515	0	ENST00000302850.5:c.3701A>C	p.Glu1234Ala	p.E1234A	ENST00000302850	NM_000208.2	1234	gAa/gCa																																																																														
CCNE1	898	MSKCC	GRCh37	19	30314606	30314606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	135	526	0	ENST00000262643.3:c.1155G>T	p.Arg385Ser	p.R385S	ENST00000262643	NM_001238.2	385	agG/agT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259156	89259156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	134	365	0	ENST00000336596.2:c.300G>T	p.Lys100Asn	p.K100N	ENST00000336596	NM_005233.5	100	aaG/aaT																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149439282	149439282	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	312	509	0	ENST00000286301.3:c.2113G>T	p.Glu705Ter	p.E705*	ENST00000286301	NM_005211.3	705	Gag/Tag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38178589	38178589	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	160	378	0	ENST00000317025.8:c.1809+1G>T		p.X603_splice	ENST00000317025	NM_023034.1	603																																																																															
PREX2	80243	MSKCC	GRCh37	8	69050683	69050683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	76	389	0	ENST00000288368.4:c.4018G>T	p.Val1340Phe	p.V1340F	ENST00000288368	NM_024870.2	1340	Gtt/Ttt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	192	244	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	192	244	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781056	135781056	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	282	635	1	ENST00000298552.3:c.1909G>T	p.Glu637Ter	p.E637*	ENST00000298552	NM_001162426.1	637	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76778861	76778861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	74	429	0	ENST00000373344.5:c.6718C>G	p.Leu2240Val	p.L2240V	ENST00000373344	NM_000489.3	2240	Ctc/Gtc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	13	384	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	18	381	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692993	89692993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	13	343	0	ENST00000371953.3:c.477G>T	p.Arg159Ser	p.R159S	ENST00000371953	NM_000314.4	159	agG/agT																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	120	388	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495360	149495360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114435947		P-0050138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	74	763	0	ENST00000261799.4:c.3287C>T	p.Ala1096Val	p.A1096V	ENST00000261799	NM_002609.3	1096	gCg/gTg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	37	469	0	ENST00000401558.2:c.2246G>C	p.Arg749Pro	p.R749P	ENST00000401558	NM_003400.3	749	cGa/cCa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264052	16264052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	109	891	0	ENST00000375759.3:c.10421C>T	p.Pro3474Leu	p.P3474L	ENST00000375759	NM_015001.2	3474	cCa/cTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231102	46231102	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0050138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	31	302	0	ENST00000334344.6:c.1024-2A>G		p.X342_splice	ENST00000334344	NM_152641.2	342																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0050141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4879	149	435	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	665	558	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175879	112175880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	97	288	0	ENST00000257430.4:c.4592dup	p.Asn1531LysfsTer2	p.N1531Kfs*2	ENST00000257430	NM_000038.5	1530	gaa/gAaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945532	151945532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	107	361	0	ENST00000262189.6:c.1987C>T	p.Gln663Ter	p.Q663*	ENST00000262189	NM_170606.2	663	Cag/Tag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18974420	18974420	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs189120195		P-0050141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	158	385	0	ENST00000262803.5:c.2774C>T	p.Pro925Leu	p.P925L	ENST00000262803	NM_002911.3	925	cCg/cTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481696	56481696	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0050141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	264	648	0	ENST00000267101.3:c.731T>C	p.Phe244Ser	p.F244S	ENST00000267101	NM_001982.3	244	tTt/tCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087486	27087567	+	frameshift_variant	Frame_Shift_Del	DEL	CTCACCTGCCTGGCATCCGAGGCCCTTCCCCGTCCCCTGTTGGCTCTCCCGCCAGTGTTGCTCAGTCTCGCTCAGGACCACT	CTCACCTGCCTGGCATCCGAGGCCCTTCCCCGTCCCCTGTTGGCTCTCCCGCCAGTGTTGCTCAGTCTCGCTCAGGACCACT	-			P-0050141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	68	606	0	ENST00000324856.7:c.2063_2144del	p.His688ArgfsTer27	p.H688Rfs*27	ENST00000324856	NM_006015.4	687	cCTCACCTGCCTGGCATCCGAGGCCCTTCCCCGTCCCCTGTTGGCTCTCCCGCCAGTGTTGCTCAGTCTCGCTCAGGACCACTc/cc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532567	63532567	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	198	692	0	ENST00000307078.5:c.2012del	p.Arg671ProfsTer18	p.R671Pfs*18	ENST00000307078	NM_004655.3	671	cGc/cc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251713	212251713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	247	396	3	ENST00000342788.4:c.3346G>A	p.Ala1116Thr	p.A1116T	ENST00000342788	NM_005235.2	1116	Gca/Aca																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143352400	143352400	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	174	550	0	ENST00000262992.4:c.13G>C	p.Glu5Gln	p.E5Q	ENST00000262992	NM_001101669.1	5	Gag/Cag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86658369	86658369	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0050141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	30	122	0	ENST00000274376.6:c.1334A>G	p.Asp445Gly	p.D445G	ENST00000274376	NM_002890.2	445	gAt/gGt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69039652	69039652	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	52	352	0	ENST00000288368.4:c.3764C>T	p.Ser1255Leu	p.S1255L	ENST00000288368	NM_024870.2	1255	tCa/tTa																																																																														
SYK	6850	MSKCC	GRCh37	9	93636990	93636990	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	144	452	0	ENST00000375746.1:c.1040T>A	p.Val347Glu	p.V347E	ENST00000375746	NM_001174167.1	347	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	420	486	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
FH	2271	MSKCC	GRCh37	1	241671958	241671958	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	152	494	0	ENST00000366560.3:c.683T>G	p.Ile228Ser	p.I228S	ENST00000366560	NM_000143.3	228	aTc/aGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41573009	41573019	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAGCATACC	TGCAGCATACC	G			P-0050142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	530	772	0	ENST00000263253.7:c.5294_5304delinsG	p.Val1765GlyfsTer40	p.V1765Gfs*40	ENST00000263253	NM_001429.3	1765	gTGCAGCATACC/gG																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032356	10032356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	78	97	0	ENST00000330684.3:c.467C>T	p.Thr156Met	p.T156M	ENST00000330684	NM_001134407.1	156	aCg/aTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632654	3632654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	57	188	2	ENST00000294008.3:c.5194G>T	p.Gly1732Cys	p.G1732C	ENST00000294008	NM_032444.2	1732	Ggt/Tgt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620542	52620542	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	94	117	0	ENST00000394830.3:c.3211del	p.Arg1071AlafsTer63	p.R1071Afs*63	ENST00000394830	NM_018313.4	1071	Cgc/gc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224718	123224718	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	21	88	0	ENST00000218089.9:c.3482G>A	p.Trp1161Ter	p.W1161*	ENST00000218089	NM_001042749.1	1161	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	551	1004	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794903	242794903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	152	947	0	ENST00000334409.5:c.306C>A	p.Asn102Lys	p.N102K	ENST00000334409	NM_005018.2	102	aaC/aaA																																																																														
KIT	3815	MSKCC	GRCh37	4	55565857	55565857	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	83	584	0	ENST00000288135.5:c.681A>T	p.Glu227Asp	p.E227D	ENST00000288135	NM_000222.2	227	gaA/gaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	114	483	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	134	596	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	119	334	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	173	740	9	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	15	124	1	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838347	156838347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	244	1055	1	ENST00000524377.1:c.625G>A	p.Asp209Asn	p.D209N	ENST00000524377	NM_002529.3	209	Gac/Aac																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	92	351	5	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272497	15272497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	166	843	0	ENST00000263388.2:c.5942G>A	p.Arg1981His	p.R1981H	ENST00000263388	NM_000435.2	1981	cGc/cAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	116	402	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	42	1057	1	ENST00000575354.2:c.3347dupC	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44514780	44514780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	37	507	2	ENST00000291552.4:c.467G>A	p.Arg156His	p.R156H	ENST00000291552	NM_006758.2	156	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	77	683	1	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	211	983	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350023	15350023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	192	949	2	ENST00000263377.2:c.3629C>T	p.Pro1210Leu	p.P1210L	ENST00000263377	NM_058243.2	1210	cCg/cTg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654646	67654646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	164	572	0	ENST00000264010.4:c.1133C>T	p.Pro378Leu	p.P378L	ENST00000264010	NM_006565.3	378	cCg/cTg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39706276	39706276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	75	258	0	ENST00000361337.2:c.334A>G	p.Ser112Gly	p.S112G	ENST00000361337	NM_003286.2	112	Agt/Ggt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228795	36228795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	190	862	1	ENST00000222270.7:c.7694G>A	p.Arg2565His	p.R2565H	ENST00000222270	NM_014727.1	2565	cGt/cAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162078	47162078	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	119	395	0	ENST00000409792.3:c.4048del	p.Ser1350GlnfsTer23	p.S1350Qfs*23	ENST00000409792	NM_014159.6	1350	Tca/ca																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982165	201982165	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	174	795	2	ENST00000359651.3:c.688+1G>A		p.X230_splice	ENST00000359651		230																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946961	71946961	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	195	1002	0	ENST00000298229.2:c.2810A>C	p.Lys937Thr	p.K937T	ENST00000298229	NM_001567.3	937	aAa/aCa																																																																														
ATM	472	MSKCC	GRCh37	11	108160366	108160366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	74	291	0	ENST00000278616.4:c.4274A>G	p.Gln1425Arg	p.Q1425R	ENST00000278616	NM_000051.3	1425	cAa/cGa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230387	46230389	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	92	345	0	ENST00000334344.6:c.722_724del	p.Val241del	p.V241del	ENST00000334344	NM_152641.2	241	GTT/-																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831273	72831273	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	141	573	0	ENST00000268489.5:c.5308C>T	p.Gln1770Ter	p.Q1770*	ENST00000268489	NM_006885.3	1770	Cag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627595	37627595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	122	536	0	ENST00000447079.4:c.1510A>G	p.Lys504Glu	p.K504E	ENST00000447079	NM_015083.1	504	Aaa/Gaa																																																																														
YES1	7525	MSKCC	GRCh37	18	745803	745803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	113	597	0	ENST00000314574.4:c.629A>G	p.Lys210Arg	p.K210R	ENST00000314574	NM_005433.3	210	aAa/aGa																																																																														
AXL	558	MSKCC	GRCh37	19	41765784	41765784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	120	546	0	ENST00000301178.4:c.2660C>T	p.Ala887Val	p.A887V	ENST00000301178	NM_021913.4	887	gCc/gTc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030816	48030816	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	76	278	0	ENST00000234420.5:c.3430A>T	p.Met1144Leu	p.M1144L	ENST00000234420	NM_000179.2	1144	Atg/Ttg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267681	198267681	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	87	346	0	ENST00000335508.6:c.1798T>G	p.Leu600Val	p.L600V	ENST00000335508	NM_012433.2	600	Ttg/Gtg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023637	31023637	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	170	643	1	ENST00000375687.4:c.3125del	p.Pro1042HisfsTer5	p.P1042Hfs*5	ENST00000375687	NM_015338.5	1041	gCc/gc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125773	47125773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	42	319	1	ENST00000409792.3:c.5497G>A	p.Ala1833Thr	p.A1833T	ENST00000409792	NM_014159.6	1833	Gct/Act																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664945	138664945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	107	277	0	ENST00000330315.3:c.620C>T	p.Pro207Leu	p.P207L	ENST00000330315	NM_023067.3	207	cCg/cTg																																																																														
ATR	545	MSKCC	GRCh37	3	142281818	142281818	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	122	462	0	ENST00000350721.4:c.426del	p.Phe142LeufsTer23	p.F142Lfs*23	ENST00000350721	NM_001184.3	142	ttT/tt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249391	153249391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	104	510	0	ENST00000281708.4:c.1387A>G	p.Thr463Ala	p.T463A	ENST00000281708	NM_033632.3	463	Act/Gct																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589580	67589609	+	inframe_deletion	In_Frame_Del	DEL	AATTACATGAATATAACACTCAGTTTCAAG	AATTACATGAATATAACACTCAGTTTCAAG	-			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	35	229	0	ENST00000274335.5:c.1345_1374del	p.Leu449_Glu458del	p.L449_E458del	ENST00000274335		448	aAATTACATGAATATAACACTCAGTTTCAAGaa/aaa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672299	86672299	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	130	410	0	ENST00000274376.6:c.2101A>G	p.Ile701Val	p.I701V	ENST00000274376	NM_002890.2	701	Att/Gtt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056113	26056113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	137	514	0	ENST00000343677.2:c.544C>T	p.Pro182Ser	p.P182S	ENST00000343677	NM_005319.3	182	Ccc/Tcc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056362	26056362	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	110	441	0	ENST00000343677.2:c.295A>G	p.Thr99Ala	p.T99A	ENST00000343677	NM_005319.3	99	Acc/Gcc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704655	117704655	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	100	317	0	ENST00000368508.3:c.2321T>C	p.Val774Ala	p.V774A	ENST00000368508	NM_002944.2	774	gTg/gCg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55270294	55270294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	209	816	2	ENST00000275493.2:c.3247G>T	p.Asp1083Tyr	p.D1083Y	ENST00000275493	NM_005228.3	1083	Gac/Tac																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508686	106508686	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	152	556	0	ENST00000359195.3:c.680G>T	p.Ser227Ile	p.S227I	ENST00000359195	NM_002649.2	227	aGc/aTc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250140	110250141	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	166	893	0	ENST00000374672.4:c.534dup	p.Pro179SerfsTer78	p.P179Sfs*78	ENST00000374672	NM_004235.4	178	-/T																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127951954	127951954	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	188	804	0	ENST00000373547.4:c.44T>C	p.Leu15Pro	p.L15P	ENST00000373547	NM_002721.4	15	cTg/cCg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939100	76939100	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201284965		P-0050149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	126	546	0	ENST00000373344.5:c.1648A>G	p.Ser550Gly	p.S550G	ENST00000373344	NM_000489.3	550	Agt/Ggt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0050150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	21	355	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	34	684	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868209	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0050150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	27	679	0	ENST00000269571.5:c.929_930delinsAT	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCC/tAT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	95	371	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	53	253	0				ENST00000310581	NM_198253.2																																																																																
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0050151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	198	473	1	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0050153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	29	484	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0050154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	164	396	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
ATR	545	MSKCC	GRCh37	3	142275399	142275399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202162034		P-0050154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	116	265	0	ENST00000350721.4:c.1904G>A	p.Arg635Gln	p.R635Q	ENST00000350721	NM_001184.3	635	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	1097	629	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44936018	44936018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	219	493	0	ENST00000377967.4:c.2779C>G	p.Pro927Ala	p.P927A	ENST00000377967	NM_021140.2	927	Cca/Gca																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696634	47696638	+	missense_variant	Missense_Mutation	ONP	GAGAA	GAGAA	AAGAT			P-0050165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	31	395	0	ENST00000347630.2:c.310_314delinsATCTT	p.Phe104_Ser105delinsIlePhe	p.F104_S105delinsIF	ENST00000347630	NM_001007230.1	104	TTCTCc/ATCTTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48881462	48881462	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	45	172	0	ENST00000267163.4:c.184C>T	p.Gln62Ter	p.Q62*	ENST00000267163	NM_000321.2	62	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	243	596	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68989697	68989697	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	45	445	0	ENST00000288368.4:c.1635G>T	p.Met545Ile	p.M545I	ENST00000288368	NM_024870.2	545	atG/atT																																																																														
PAK1	5058	MSKCC	GRCh37	11	77051780	77051780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	197	393	0	ENST00000356341.3:c.1027G>T	p.Val343Phe	p.V343F	ENST00000356341	NM_002576.4	343	Gtt/Ttt																																																																														
YAP1	10413	MSKCC	GRCh37	11	102080266	102080266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	88	373	0	ENST00000282441.5:c.1003C>T	p.Pro335Ser	p.P335S	ENST00000282441	NM_001130145.2	335	Ccc/Tcc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28602339	28602339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	199	397	0	ENST00000241453.7:c.2029C>A	p.Leu677Met	p.L677M	ENST00000241453	NM_004119.2	677	Ctg/Atg																																																																														
BARD1	580	MSKCC	GRCh37	2	215646222	215646222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	47	245	0	ENST00000260947.4:c.376G>T	p.Asp126Tyr	p.D126Y	ENST00000260947	NM_000465.2	126	Gat/Tat																																																																														
SMO	6608	MSKCC	GRCh37	7	128846100	128846100	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	258	664	0	ENST00000249373.3:c.1030A>G	p.Lys344Glu	p.K344E	ENST00000249373	NM_005631.4	344	Aaa/Gaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636818	8636818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	119	360	0	ENST00000356435.5:c.91G>C	p.Val31Leu	p.V31L	ENST00000356435		31	Gtt/Ctt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411938	63411938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	219	316	0	ENST00000330258.3:c.1229G>T	p.Trp410Leu	p.W410L	ENST00000330258	NM_152424.3	410	tGg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	18	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	175	571	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604715	48604715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	40	341	0	ENST00000342988.3:c.1537T>C	p.Tyr513His	p.Y513H	ENST00000342988	NM_005359.5	513	Tac/Cac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	138	366	0	ENST00000304494.5:c.132C>A	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	138	366	0	ENST00000304494.5:c.132C>A	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taA																																																																														
BTK	695	MSKCC	GRCh37	X	100608963	100608963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	34	424	0	ENST00000308731.7:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000308731	NM_000061.2	549	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106852	27106853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCAG			P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	125	531	0	ENST00000324856.7:c.6465_6468dup	p.Asp2157GlnfsTer2	p.D2157Qfs*2	ENST00000324856	NM_006015.4	2155	ctc/cTCAGtc																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778179	27778179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	64	629	0	ENST00000369163.2:c.328C>A	p.Leu110Met	p.L110M	ENST00000369163	NM_003536.2	110	Ctg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	18	558	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165207	47165207	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	48	294	0	ENST00000409792.3:c.919del	p.Ser307LeufsTer33	p.S307Lfs*33	ENST00000409792	NM_014159.6	307	Tct/ct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0050172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	70	423	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	137	739	0	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0050173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	195	646	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579346	7579348	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs764486868		P-0050173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	637	773	0	ENST00000269305.4:c.339_341del	p.Phe113del	p.F113del	ENST00000269305	NM_001126112.2	113	ttCTTg/ttg																																																																														
SMO	6608	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0050173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	10	71	0	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259640	11259640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	368	508	0	ENST00000361445.4:c.4065G>C	p.Gln1355His	p.Q1355H	ENST00000361445	NM_004958.3	1355	caG/caC																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530136	212530136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	208	357	0	ENST00000342788.4:c.1783G>A	p.Asp595Asn	p.D595N	ENST00000342788	NM_005235.2	595	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	256	372	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	137	262	0				ENST00000310581	NM_198253.2																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	145	215	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432409	49432412	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	333	690	0	ENST00000301067.7:c.8727_8730delAAGT	p.Ser2910ArgfsTer32	p.S2910Rfs*32	ENST00000301067	NM_003482.3	2909	gtAAGT/gt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878020	151878020	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	237	343	0	ENST00000262189.6:c.6925C>T	p.Gln2309Ter	p.Q2309*	ENST00000262189	NM_170606.2	2309	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878332	151878332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	323	452	0	ENST00000262189.6:c.6613C>T	p.His2205Tyr	p.H2205Y	ENST00000262189	NM_170606.2	2205	Cat/Tat																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982141	201982142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	358	684	0	ENST00000359651.3:c.666dupT	p.Asp223Ter	p.D223*	ENST00000359651		222	act/acTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431915	49431916	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	327	650	0	ENST00000301067.7:c.9223dup	p.Ser3075PhefsTer3	p.S3075Ffs*3	ENST00000301067	NM_003482.3	3075	tcg/tTcg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808012	3808013	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	236	422	0	ENST00000262367.5:c.3406_3407del	p.Ser1136HisfsTer32	p.S1136Hfs*32	ENST00000262367	NM_004380.2	1136	TCc/c																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3860636	3860636	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	94	473	0	ENST00000262367.5:c.943A>T	p.Lys315Ter	p.K315*	ENST00000262367	NM_004380.2	315	Aag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68862194	68862194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	227	399	0	ENST00000261769.5:c.2282G>C	p.Gly761Ala	p.G761A	ENST00000261769	NM_004360.3	761	gGa/gCa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965117	81965117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	181	426	0	ENST00000359376.3:c.2597G>T	p.Gly866Val	p.G866V	ENST00000359376	NM_002661.3	866	gGa/gTa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523067	25523067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	310	614	0	ENST00000264709.3:c.118G>A	p.Glu40Lys	p.E40K	ENST00000264709	NM_175629.2	40	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878088	151878088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	276	384	0	ENST00000262189.6:c.6857C>T	p.Thr2286Ile	p.T2286I	ENST00000262189	NM_170606.2	2286	aCa/aTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878094	151878094	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	286	384	0	ENST00000262189.6:c.6851C>G	p.Ser2284Ter	p.S2284*	ENST00000262189	NM_170606.2	2284	tCa/tGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878287	151878287	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	307	448	0	ENST00000262189.6:c.6658C>G	p.Gln2220Glu	p.Q2220E	ENST00000262189	NM_170606.2	2220	Cag/Gag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878301	151878301	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	309	457	0	ENST00000262189.6:c.6644del	p.Ser2215LeufsTer24	p.S2215Lfs*24	ENST00000262189	NM_170606.2	2215	tCt/tt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879484	151879484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	324	374	0	ENST00000262189.6:c.5461C>G	p.Pro1821Ala	p.P1821A	ENST00000262189	NM_170606.2	1821	Cct/Gct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151932972	151932972	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	20	37	0	ENST00000262189.6:c.2699del	p.Gly900AspfsTer13	p.G900Dfs*13	ENST00000262189	NM_170606.2	900	gGa/ga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966698	44966698	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	258	202	0	ENST00000377967.4:c.3922G>T	p.Glu1308Ter	p.E1308*	ENST00000377967	NM_021140.2	1308	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	285	371	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0050175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	758	611	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	97	207	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	127	293	0	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755782	57755782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	244	450	0	ENST00000274289.3:c.5A>G	p.Glu2Gly	p.E2G	ENST00000274289	NM_006622.3	2	gAg/gGg																																																																														
APC	324	MSKCC	GRCh37	5	112174018	112174019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	132	239	0	ENST00000257430.4:c.2728dup	p.Thr910AsnfsTer2	p.T910Nfs*2	ENST00000257430	NM_000038.5	909	-/A																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	35	942	0	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	12	220	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0050185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	21	495	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717715	89717716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1393832338		P-0050185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	52	402	1	ENST00000371953.3:c.741dup	p.Pro248ThrfsTer5	p.P248Tfs*5	ENST00000371953	NM_000314.4	247	tta/ttAa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274746	123274746	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	48	493	0	ENST00000358487.5:c.1172T>G	p.Met391Arg	p.M391R	ENST00000358487	NM_000141.4	391	aTg/aGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023253	27023274	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCGGCGGCGGCGGTGGCGG	CGCCCGGCGGCGGCGGTGGCGG	-			P-0050185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	23	189	0	ENST00000324856.7:c.360_381del	p.Pro121AlafsTer104	p.P121Afs*104	ENST00000324856	NM_006015.4	120	cCGCCCGGCGGCGGCGGTGGCGGc/cc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645933	67645933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	46	524	0	ENST00000264010.4:c.862del	p.His288ThrfsTer22	p.H288Tfs*22	ENST00000264010	NM_006565.3	287	agC/ag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	120	542	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	120	542	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	120	542	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	175	825	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056421	180056421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	54	638	0	ENST00000261937.6:c.823C>T	p.Arg275Trp	p.R275W	ENST00000261937	NM_182925.4	275	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420011	41420011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	61	599	1	ENST00000373198.4:c.310G>A	p.Asp104Asn	p.D104N	ENST00000373198	NM_133170.3	104	Gac/Aac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492756	56492757	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	109	523	0	ENST00000407977.2:c.182_183del	p.Leu61GlnfsTer13	p.L61Qfs*13	ENST00000407977		61	cTG/c																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39609362	39609362	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	90	314	0	ENST00000262039.4:c.1664T>G	p.Leu555Arg	p.L555R	ENST00000262039	NM_002647.2	555	cTa/cGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398283	25398285	+	missense_variant	Missense_Mutation	ONP	ACC	ACC	CCG			P-0050186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	79	376	0	ENST00000256078.4:c.34_36delinsCGG	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	GGT/CGG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101402	27101402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	34	464	0	ENST00000324856.7:c.4689del	p.Met1564Ter	p.M1564*	ENST00000324856	NM_006015.4	1562	Ccc/cc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	69	608	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	9	235	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	48	316	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																														
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0050187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	68	632	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	28	280	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224440	39224440	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	16	545	0	ENST00000402219.2:c.2918A>T	p.Gln973Leu	p.Q973L	ENST00000402219	NM_005633.3	973	cAg/cTg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696730	47696730	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	73	331	0	ENST00000347630.2:c.218C>G	p.Pro73Arg	p.P73R	ENST00000347630	NM_001007230.1	73	cCc/cGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101474	27101475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAGCCCTGCTCCCCTGCC			P-0050187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	103	754	0	ENST00000324856.7:c.4759_4777dup	p.Arg1593GlnfsTer16	p.R1593Qfs*16	ENST00000324856	NM_006015.4	1586	tcc/tCCAGCCCTGCTCCCCTGCCcc																																																																														
ATRX	546	MSKCC	GRCh37	X	76763912	76763912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	66	606	1	ENST00000373344.5:c.7396G>A	p.Gly2466Ser	p.G2466S	ENST00000373344	NM_000489.3	2466	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	251	763	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980792	40980792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	44	551	0	ENST00000373198.4:c.1694C>A	p.Thr565Asn	p.T565N	ENST00000373198	NM_133170.3	565	aCc/aAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966655	44966655	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0050188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	20	259	1	ENST00000377967.4:c.3879G>T	p.Lys1293Asn	p.K1293N	ENST00000377967	NM_021140.2	1293	aaG/aaT																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781056	135781056	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	171	640	0	ENST00000298552.3:c.1909G>T	p.Glu637Ter	p.E637*	ENST00000298552	NM_001162426.1	637	Gaa/Taa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211452	46211452	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0050188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	39	156	0	ENST00000334344.6:c.419-1G>T		p.X140_splice	ENST00000334344	NM_152641.2	140																																																																															
RB1	5925	MSKCC	GRCh37	13	48954168	48954197	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTAAATTATCTGTTTCAGGAAGAAGAA	TTTTTAAATTATCTGTTTCAGGAAGAAGAA	-			P-0050188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	16	162	0	ENST00000267163.4:c.1390-21_1398del		p.X464_splice	ENST00000267163	NM_000321.2	464																																																																															
HGF	3082	MSKCC	GRCh37	7	81392042	81392042	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	61	298	0	ENST00000222390.5:c.235G>T	p.Gly79Ter	p.G79*	ENST00000222390	NM_000601.4	79	Gga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0050189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	84	332	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936103	178936103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	145	420	0	ENST00000263967.3:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000263967	NM_006218.2	549	Gat/Aat																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	123	314	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023183	27023183	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	62	117	0	ENST00000324856.7:c.289G>T	p.Glu97Ter	p.E97*	ENST00000324856	NM_006015.4	97	Gag/Tag																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	263	468	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803165	1803165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	303	991	1	ENST00000260795.2:c.517C>T	p.Arg173Cys	p.R173C	ENST00000260795		173	Cgc/Tgc																																																																														
MED12	9968	MSKCC	GRCh37	X	70339326	70339327	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GCTT			P-0050189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	162	443	0	ENST00000374080.3:c.204_204+1insCTTG	p.Ile69LeufsTer17	p.I69Lfs*17	ENST00000374080		68	aag/aaGCTTg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	157	857	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431319	49431319	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	117	631	0	ENST00000301067.7:c.9820C>T	p.Gln3274Ter	p.Q3274*	ENST00000301067	NM_003482.3	3274	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433053	49433062	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAGTCGGT	GAGAGTCGGT	-			P-0050193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	153	881	0	ENST00000301067.7:c.8309_8318del	p.Asp2770AlafsTer14	p.D2770Afs*14	ENST00000301067	NM_003482.3	2770	gACCGACTCTCc/gc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048714	180048714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	111	866	1	ENST00000261937.6:c.1848C>A	p.Phe616Leu	p.F616L	ENST00000261937	NM_182925.4	616	ttC/ttA																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184086	123184086	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	87	194	0	ENST00000218089.9:c.944G>A	p.Trp315Ter	p.W315*	ENST00000218089	NM_001042749.1	315	tGg/tAg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2194560	2194560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	42	484	0	ENST00000398665.3:c.635A>G	p.Lys212Arg	p.K212R	ENST00000398665	NM_032482.2	212	aAg/aGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	111	295	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	223	725	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	179	427	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947852	178947852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	48	255	0	ENST00000263967.3:c.2727C>A	p.Phe909Leu	p.F909L	ENST00000263967	NM_006218.2	909	ttC/ttA																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808930	1808930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	335	894	0	ENST00000260795.2:c.2362G>A	p.Val788Met	p.V788M	ENST00000260795		788	Gtg/Atg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884145	37884145	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	163	795	0	ENST00000269571.5:c.3616C>T	p.Gln1206Ter	p.Q1206*	ENST00000269571		1206	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11181402	11181402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	128	701	0	ENST00000361445.4:c.6834G>C	p.Leu2278Phe	p.L2278F	ENST00000361445	NM_004958.3	2278	ttG/ttC																																																																														
KDM5A	5927	MSKCC	GRCh37	12	422224	422224	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	110	394	0	ENST00000399788.2:c.3034C>T	p.Gln1012Ter	p.Q1012*	ENST00000399788	NM_001042603.1	1012	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11181374	11181374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	131	719	0	ENST00000361445.4:c.6862G>C	p.Glu2288Gln	p.E2288Q	ENST00000361445	NM_004958.3	2288	Gag/Cag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938406	44938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	39	359	0	ENST00000377967.4:c.2954C>T	p.Ser985Phe	p.S985F	ENST00000377967	NM_021140.2	985	tCt/tTt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925378	114925378	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	305	685	0	ENST00000543371.1:c.1456G>T	p.Asp486Tyr	p.D486Y	ENST00000543371	NM_001198531.1	486	Gat/Tat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609722	117609722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	80	451	0	ENST00000368508.3:c.6977C>T	p.Ser2326Phe	p.S2326F	ENST00000368508	NM_002944.2	2326	tCt/tTt																																																																														
ATM	472	MSKCC	GRCh37	11	108158432	108158432	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	74	369	0	ENST00000278616.4:c.4099G>C	p.Asp1367His	p.D1367H	ENST00000278616	NM_000051.3	1367	Gac/Cac																																																																														
NF1	4763	MSKCC	GRCh37	17	29654583	29654583	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	91	257	0	ENST00000358273.4:c.5335C>G	p.Leu1779Val	p.L1779V	ENST00000358273	NM_001042492.2	1779	Cta/Gta																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219785	36219785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	149	776	0	ENST00000222270.7:c.4682C>T	p.Ser1561Leu	p.S1561L	ENST00000222270	NM_014727.1	1561	tCa/tTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743889	40743889	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	163	552	0	ENST00000373198.4:c.3106G>T	p.Glu1036Ter	p.E1036*	ENST00000373198	NM_133170.3	1036	Gaa/Taa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026116	71026116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	115	352	0	ENST00000318789.4:c.1506C>G	p.Phe502Leu	p.F502L	ENST00000318789	NM_032682.5	502	ttC/ttG																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43746206	43746206	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	125	548	2	ENST00000523873.1:c.325A>G	p.Ile109Val	p.I109V	ENST00000523873		109	Atc/Gtc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945129	44945130	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	100	334	1	ENST00000377967.4:c.3455dup	p.Cys1153LeufsTer4	p.C1153Lfs*4	ENST00000377967	NM_021140.2	1151	-/T																																																																														
STAG2	10735	MSKCC	GRCh37	X	123211906	123211906	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0050195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	116	303	0	ENST00000218089.9:c.2773C>T	p.Gln925Ter	p.Q925*	ENST00000218089	NM_001042749.1	925	Cag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	110	452	3	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3801767	3801767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	154	607	0	ENST00000262367.5:c.3739G>A	p.Glu1247Lys	p.E1247K	ENST00000262367	NM_004380.2	1247	Gag/Aag																																																																														
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	130	267	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	193	608	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	188	359	2	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673750	176673750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	125	422	0	ENST00000439151.2:c.4455del	p.Val1486Ter	p.V1486*	ENST00000439151	NM_022455.4	1484	Aaa/aa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	106	454	2	ENST00000263377.2:c.3061delC	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418405	139418405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	538	1014	0	ENST00000277541.6:c.167G>A	p.Arg56Gln	p.R56Q	ENST00000277541	NM_017617.3	56	cGa/cAa																																																																														
AR	367	MSKCC	GRCh37	X	66931504	66931504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	204	321	0	ENST00000374690.3:c.2146G>A	p.Val716Met	p.V716M	ENST00000374690	NM_000044.3	716	Gtg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096044	11096044	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	272	987	0	ENST00000344626.4:c.321del	p.Pro109ArgfsTer194	p.P109Rfs*194	ENST00000344626	NM_003072.3	106	atG/at																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542110	187542110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	121	439	1	ENST00000441802.2:c.5630del	p.Pro1877LeufsTer20	p.P1877Lfs*20	ENST00000441802	NM_005245.3	1877	cCt/ct																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	278	459	2	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226253418	226253418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	71	78	0	ENST00000366813.1:c.190C>T	p.Arg64Cys	p.R64C	ENST00000366813		64	Cgc/Tgc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716329	52716329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	22	722	0	ENST00000322088.6:c.773G>A	p.Arg258His	p.R258H	ENST00000322088	NM_014225.5	258	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107136	27107137	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	384	637	0	ENST00000324856.7:c.6749_6750del	p.Glu2250ValfsTer27	p.E2250Vfs*27	ENST00000324856	NM_006015.4	2249	tcAGag/tcag																																																																														
EP300	2033	MSKCC	GRCh37	22	41551083	41551083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	317	560	0	ENST00000263253.7:c.3227G>A	p.Arg1076His	p.R1076H	ENST00000263253	NM_001429.3	1076	cGt/cAt																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271224	26271224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	123	568	0	ENST00000305910.3:c.389G>A	p.Arg130His	p.R130H	ENST00000305910	NM_003534.2	130	cGc/cAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	358	578	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	113	910	4	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
AKT1	207	MSKCC	GRCh37	14	105239899	105239899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	206	745	3	ENST00000349310.3:c.721C>T	p.Arg241Trp	p.R241W	ENST00000349310	NM_001014432.1	241	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	533	1082	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	458	990	0	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	128	424	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468307	120468307	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	223	681	0	ENST00000256646.2:c.4132T>C	p.Cys1378Arg	p.C1378R	ENST00000256646	NM_024408.3	1378	Tgt/Cgt																																																																														
PAK7	0	MSKCC	GRCh37	20	9561376	9561376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	282	585	0	ENST00000353224.5:c.406G>A	p.Asp136Asn	p.D136N	ENST00000353224	NM_177990.2	136	Gat/Aat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223858	36223858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	272	1110	6	ENST00000222270.7:c.6413del	p.Pro2138ArgfsTer15	p.P2138Rfs*15	ENST00000222270	NM_014727.1	2136	ctC/ct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412297	139412297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	508	1036	0	ENST00000277541.6:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000277541	NM_017617.3	450	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118365075	118365075	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	142	458	0	ENST00000534358.1:c.5251A>T	p.Lys1751Ter	p.K1751*	ENST00000534358	NM_005933.3	1751	Aaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	263	471	16	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	313	938	12	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402268	402268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	64	589	0	ENST00000399788.2:c.4523G>A	p.Arg1508Gln	p.R1508Q	ENST00000399788	NM_001042603.1	1508	cGg/cAg																																																																														
TET2	54790	MSKCC	GRCh37	4	106157790	106157790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	92	303	0	ENST00000380013.4:c.2691G>T	p.Gln897His	p.Q897H	ENST00000380013	NM_001127208.2	897	caG/caT																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223485	53223485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	449	398	0	ENST00000375401.3:c.3874G>A	p.Ala1292Thr	p.A1292T	ENST00000375401	NM_004187.3	1292	Gcc/Acc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968244	2968244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	244	927	0	ENST00000396946.4:c.1742C>T	p.Ala581Val	p.A581V	ENST00000396946	NM_032415.4	581	gCg/gTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2180739	2180741	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	191	716	0	ENST00000398665.3:c.112_114del	p.Ile38del	p.I38del	ENST00000398665	NM_032482.2	37	ATC/-																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307276	65307279	+	frameshift_variant	Frame_Shift_Del	DEL	TCTC	TCTC	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	88	337	0	ENST00000342505.4:c.2409_2412del	p.Glu803AspfsTer10	p.E803Dfs*10	ENST00000342505	NM_002227.2	803	gaGAGA/ga																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348796	11348796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	83	330	0	ENST00000332029.2:c.540G>C	p.Gln180His	p.Q180H	ENST00000332029	NM_003745.1	180	caG/caC																																																																														
UPF1	5976	MSKCC	GRCh37	19	18961631	18961631	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1339234477		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	84	800	2	ENST00000262803.5:c.764G>A	p.Arg255His	p.R255H	ENST00000262803	NM_002911.3	255	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294672	1294672	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	57	614	4	ENST00000310581.5:c.329del	p.Gly110AlafsTer18	p.G110Afs*18	ENST00000310581	NM_198253.2	110	gGc/gc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980496	1980496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151213547		P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	228	877	0	ENST00000382891.5:c.3958C>T	p.Arg1320Trp	p.R1320W	ENST00000382891	NM_133335.3	1320	Cgg/Tgg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786008	135786008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	229	711	1	ENST00000298552.3:c.1213G>A	p.Asp405Asn	p.D405N	ENST00000298552	NM_001162426.1	405	Gac/Aac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807188	1807188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	460	932	1	ENST00000260795.2:c.1519G>A	p.Val507Met	p.V507M	ENST00000260795		507	Gtg/Atg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202706	16202707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	121	404	0	ENST00000375759.3:c.416dup	p.Asn139LysfsTer7	p.N139Kfs*7	ENST00000375759	NM_015001.2	138	-/A																																																																														
RFWD2	0	MSKCC	GRCh37	1	176118198	176118198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	63	224	0	ENST00000367669.3:c.775G>T	p.Ala259Ser	p.A259S	ENST00000367669	NM_022457.5	259	Gcc/Tcc																																																																														
RET	5979	MSKCC	GRCh37	10	43600417	43600417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	365	645	0	ENST00000355710.3:c.643C>T	p.Arg215Cys	p.R215C	ENST00000355710	NM_020975.4	215	Cgc/Tgc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279612	123279612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	188	652	1	ENST00000358487.5:c.820G>A	p.Val274Ile	p.V274I	ENST00000358487	NM_000141.4	274	Gta/Ata																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404783	404783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	78	505	0	ENST00000399788.2:c.4411G>A	p.Ala1471Thr	p.A1471T	ENST00000399788	NM_001042603.1	1471	Gcc/Acc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	406282	406282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	265	542	0	ENST00000399788.2:c.4159G>A	p.Val1387Met	p.V1387M	ENST00000399788	NM_001042603.1	1387	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427686	49427691	+	inframe_deletion	In_Frame_Del	DEL	TGCTGC	TGCTGC	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	194	707	0	ENST00000301067.7:c.10797_10802del	p.Gln3611_Gln3612del	p.Q3611_Q3612del	ENST00000301067	NM_003482.3	3599	caGCAGCAa/caa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562352	21562352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	242	842	0	ENST00000382592.4:c.1567C>A	p.Leu523Met	p.L523M	ENST00000382592	NM_014572.2	523	Ctg/Atg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563029	21563029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	257	917	0	ENST00000382592.4:c.890C>T	p.Pro297Leu	p.P297L	ENST00000382592	NM_014572.2	297	cCg/cTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32900640	32900640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	114	435	0	ENST00000380152.3:c.521G>A	p.Arg174His	p.R174H	ENST00000380152		174	cGt/cAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914138	32914138	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	117	477	1	ENST00000380152.3:c.5650del	p.Ile1884PhefsTer25	p.I1884Ffs*25	ENST00000380152		1882	tcA/tc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987126	36987127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	524	849	0	ENST00000354822.5:c.562dup	p.Ser188LysfsTer251	p.S188Kfs*251	ENST00000354822	NM_001079668.2	188	agc/aAgc																																																																														
MGA	23269	MSKCC	GRCh37	15	42034864	42034864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	144	532	0	ENST00000219905.7:c.4706G>A	p.Ser1569Asn	p.S1569N	ENST00000219905	NM_001164273.1	1569	aGt/aAt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244081	41244081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	62	550	0	ENST00000357654.3:c.3467A>G	p.Asp1156Gly	p.D1156G	ENST00000357654	NM_007294.3	1156	gAt/gGt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56400718	56400718	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	40	346	0	ENST00000348428.3:c.1312A>C	p.Asn438His	p.N438H	ENST00000348428	NM_006785.3	438	Aat/Cat																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110605	4110605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	448	847	0	ENST00000262948.5:c.352G>A	p.Glu118Lys	p.E118K	ENST00000262948	NM_030662.3	118	Gag/Aag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223254	5223254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	237	939	1	ENST00000357368.4:c.2549C>T	p.Ala850Val	p.A850V	ENST00000357368	NM_002850.3	850	gCa/gTa																																																																														
ALK	238	MSKCC	GRCh37	2	30143085	30143085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	483	950	0	ENST00000389048.3:c.441G>T	p.Glu147Asp	p.E147D	ENST00000389048	NM_004304.4	147	gaG/gaT																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719800	190719800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	61	286	0	ENST00000441310.2:c.1802C>T	p.Ala601Val	p.A601V	ENST00000441310	NM_000534.4	601	gCa/gTa																																																																														
PAK7	0	MSKCC	GRCh37	20	9538275	9538275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	277	460	1	ENST00000353224.5:c.1723C>A	p.Leu575Ile	p.L575I	ENST00000353224	NM_177990.2	575	Ctc/Atc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319054	62319054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	542	1102	0	ENST00000508582.2:c.1484G>A	p.Gly495Asp	p.G495D	ENST00000508582		495	gGc/gAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574058	41574058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	63	647	0	ENST00000263253.7:c.6343C>T	p.Pro2115Ser	p.P2115S	ENST00000263253	NM_001429.3	2115	Cca/Tca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266951	41266951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	120	493	2	ENST00000349496.5:c.622G>A	p.Val208Ile	p.V208I	ENST00000349496	NM_001904.3	208	Gta/Ata																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72893531	72893531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	23	511	0	ENST00000325599.8:c.187G>T	p.Gly63Trp	p.G63W	ENST00000325599	NM_018130.2	63	Ggg/Tgg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119634960	119634960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	72	299	0	ENST00000316626.5:c.539G>A	p.Arg180Gln	p.R180Q	ENST00000316626		180	cGg/cAg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435666	149435667	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	84	790	0	ENST00000286301.3:c.2476_2477del	p.Ser826HisfsTer3	p.S826Hfs*3	ENST00000286301	NM_005211.3	826	AGc/c																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271596	26271596	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	195	388	0	ENST00000305910.3:c.17A>G	p.Gln6Arg	p.Q6R	ENST00000305910	NM_003534.2	6	cAg/cGg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680389	30680389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	231	611	2	ENST00000376406.3:c.1330C>T	p.Arg444Ter	p.R444*	ENST00000376406	NM_014641.2	444	Cga/Tga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169923	32169923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	257	966	0	ENST00000375023.3:c.3685T>C	p.Cys1229Arg	p.C1229R	ENST00000375023	NM_004557.3	1229	Tgc/Cgc																																																																														
CDK6	1021	MSKCC	GRCh37	7	92244576	92244576	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	106	394	0	ENST00000265734.4:c.859A>G	p.Lys287Glu	p.K287E	ENST00000265734	NM_001259.6	287	Aaa/Gaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880172	151880172	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	27	442	0	ENST00000262189.6:c.5152del	p.Arg1718GlyfsTer23	p.R1718Gfs*23	ENST00000262189	NM_170606.2	1718	Agg/gg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194806	29194806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	275	981	1	ENST00000240100.2:c.922G>A	p.Glu308Lys	p.E308K	ENST00000240100	NM_001394.6	308	Gag/Aag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740834	145740834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	83	837	0	ENST00000428558.2:c.1266G>T	p.Glu422Asp	p.E422D	ENST00000428558	NM_004260.3	422	gaG/gaT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970979	21970979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	104	762	0	ENST00000304494.5:c.379G>A	p.Ala127Thr	p.A127T	ENST00000304494	NM_000077.4	127	Gca/Aca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970979	21970979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	104	762	0	ENST00000304494.5:c.379G>A	p.Ala127Thr	p.A127T	ENST00000304494	NM_000077.4	127	Gca/Aca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239064	98239064	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	97	458	0	ENST00000331920.6:c.1579C>T	p.Gln527Ter	p.Q527*	ENST00000331920	NM_000264.3	527	Cag/Tag																																																																														
BTK	695	MSKCC	GRCh37	X	100611079	100611079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	416	419	0	ENST00000308731.7:c.1527G>A	p.Met509Ile	p.M509I	ENST00000308731	NM_000061.2	509	atG/atA																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	85	352	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
AXL	558	MSKCC	GRCh37	19	41758823	41758823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	68	712	0	ENST00000301178.4:c.1877G>C	p.Gly626Ala	p.G626A	ENST00000301178	NM_021913.4	626	gGa/gCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426247	49426247	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	96	909	0	ENST00000301067.7:c.12241C>T	p.Gln4081Ter	p.Q4081*	ENST00000301067	NM_003482.3	4081	Cag/Tag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250997	99250997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	77	519	0	ENST00000268035.6:c.301C>T	p.Pro101Ser	p.P101S	ENST00000268035	NM_000875.3	101	Ccc/Tcc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17384826	17384826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	234	697	0	ENST00000359435.4:c.458C>T	p.Thr153Met	p.T153M	ENST00000359435	NM_001033549.1	153	aCg/aTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70356362	70356362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	46	633	0	ENST00000374080.3:c.5257G>A	p.Ala1753Thr	p.A1753T	ENST00000374080		1753	Gct/Act																																																																														
POLE	5426	MSKCC	GRCh37	12	133238113	133238113	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	52	399	0	ENST00000320574.5:c.2864G>A	p.Arg955Lys	p.R955K	ENST00000320574	NM_006231.2	955	aGg/aAg																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023107	33023107	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	85	527	0	ENST00000300177.4:c.216G>C	p.Glu72Asp	p.E72D	ENST00000300177	NM_001191322.1	72	gaG/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	17	649	0	ENST00000269305.4:c.559G>A	p.Gly187Ser	p.G187S	ENST00000269305	NM_001126112.2	187	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	25	864	2	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	13	518	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31495469	31495469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	95	465	0	ENST00000344624.3:c.1679C>T	p.Pro560Leu	p.P560L	ENST00000344624		560	cCc/cTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	103	472	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006898	47006898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	179	719	0	ENST00000329236.7:c.17+1G>T		p.X6_splice	ENST00000329236	NM_001204466.1	6																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100069	27100070	+	splice_acceptor_variant	Splice_Site	DNP	AG	AG	TT			P-0050198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	37	699	0	ENST00000324856.7:c.3867-2_3867-1delinsTT		p.X1289_splice	ENST00000324856	NM_006015.4	1289																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	29	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	48	626	0	ENST00000269305.4:c.770T>G	p.Leu257Arg	p.L257R	ENST00000269305	NM_001126112.2	257	cTg/cGg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231286	46231286	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	22	327	0	ENST00000334344.6:c.1126G>T	p.Glu376Ter	p.E376*	ENST00000334344	NM_152641.2	376	Gaa/Taa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56494933	56494933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	50	600	0	ENST00000267101.3:c.3290C>T	p.Ser1097Leu	p.S1097L	ENST00000267101	NM_001982.3	1097	tCa/tTa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782233	56782233	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	50	538	0	ENST00000308159.5:c.74A>G	p.Glu25Gly	p.E25G	ENST00000308159	NM_014669.4	25	gAg/gGg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30648394	30648395	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	29	564	0	ENST00000359013.4:c.23dup	p.Leu9ProfsTer33	p.L9Pfs*33	ENST00000359013	NM_001024847.2	7	agg/aGgg																																																																														
VHL	7428	MSKCC	GRCh37	3	10188200	10188200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0050200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	184	433	0	ENST00000256474.2:c.343C>A	p.His115Asn	p.H115N	ENST00000256474	NM_000551.3	115	Cac/Aac																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597493	52597493	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	89	320	0	ENST00000394830.3:c.3817C>T	p.Gln1273Ter	p.Q1273*	ENST00000394830	NM_018313.4	1273	Cag/Tag																																																																														
TET2	54790	MSKCC	GRCh37	4	106197269	106197269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	136	295	0	ENST00000380013.4:c.5602C>T	p.His1868Tyr	p.H1868Y	ENST00000380013	NM_001127208.2	1868	Cat/Tat																																																																														
TET2	54790	MSKCC	GRCh37	4	106156557	106156560	+	frameshift_variant	Frame_Shift_Del	DEL	CAGG	CAGG	-			P-0050200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	106	282	0	ENST00000380013.4:c.1458_1461del	p.Asn486LysfsTer10	p.N486Kfs*10	ENST00000380013	NM_001127208.2	486	aaCAGG/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	234	336	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494603	2494603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	110	562	2	ENST00000355716.4:c.743C>T	p.Ala248Val	p.A248V	ENST00000355716	NM_003820.2	248	gCa/gTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	94	385	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0050202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	196	711	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0050202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	221	715	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	108	526	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720803	89720804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	97	220	0	ENST00000371953.3:c.955dup	p.Thr319AsnfsTer6	p.T319Nfs*6	ENST00000371953	NM_000314.4	318	-/A																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436599	49436599	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	217	691	0	ENST00000301067.7:c.5707C>T	p.Arg1903Ter	p.R1903*	ENST00000301067	NM_003482.3	1903	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790170	40790170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	125	423	0	ENST00000373198.4:c.2561G>A	p.Arg854His	p.R854H	ENST00000373198	NM_133170.3	854	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577553	7577554	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCAGGAACTGTTACACATGTAGT			P-0050202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	132	567	0	ENST00000269305.4:c.704_727dup	p.Asn235_Cys242dup	p.N235_C242dup	ENST00000269305	NM_001126112.2	235	atg/aACTACATGTGTAACAGTTCCTGCAtg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808914	1808925	+	inframe_deletion	In_Frame_Del	DEL	CTCAGGGGACGA	CTCAGGGGACGA	-			P-0050202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	246	848	0	ENST00000260795.2:c.2349_2360del	p.Gly784_Ser787del	p.G784_S787del	ENST00000260795		782	tcCTCAGGGGACGAc/tcc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509679	106509679	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	179	481	0	ENST00000359195.3:c.1673T>A	p.Ile558Asn	p.I558N	ENST00000359195	NM_002649.2	558	aTc/aAc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328427	137328428	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATA			P-0050202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	263	902	0	ENST00000481739.1:c.1356_1357insATA	p.Met452_Glu453insIle	p.M452_E453insI	ENST00000481739	NM_002957.4	452	-/ATA																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14629147	14629149	+	missense_variant	Missense_Mutation	ONP	GTA	GTA	CTG			P-0050202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	145	434	0	ENST00000254322.2:c.13_15delinsCAG	p.Tyr5Gln	p.Y5Q	ENST00000254322	NM_006145.1	5	TAC/CAG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	87	340	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	65	330	0				ENST00000310581	NM_198253.2																																																																																
HLA-A	3105	MSKCC	GRCh37	6	29912174	29912174	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	27	188	0	ENST00000376809.5:c.895G>T	p.Glu299Ter	p.E299*	ENST00000376809	NM_002116.7	299	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	174	738	0	ENST00000269305.4:c.476C>A	p.Ala159Asp	p.A159D	ENST00000269305	NM_001126112.2	159	gCc/gAc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855787	45855787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	88	707	0	ENST00000391945.4:c.2023G>T	p.Gly675Cys	p.G675C	ENST00000391945	NM_000400.3	675	Ggc/Tgc																																																																														
AKT2	208	MSKCC	GRCh37	19	40742005	40742005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	126	636	0	ENST00000392038.2:c.967G>A	p.Glu323Lys	p.E323K	ENST00000392038	NM_001626.4	323	Gag/Aag																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197474	26197474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	47	309	1	ENST00000356476.2:c.5C>T	p.Ala2Val	p.A2V	ENST00000356476		2	gCt/gTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258257	16258257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	58	527	0	ENST00000375759.3:c.5522C>G	p.Thr1841Arg	p.T1841R	ENST00000375759	NM_015001.2	1841	aCa/aGa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342482	118342482	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	89	196	0	ENST00000534358.1:c.608A>C	p.Glu203Ala	p.E203A	ENST00000534358	NM_005933.3	203	gAg/gCg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863199	57863275	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCATCTTCTCCACAGAAGCCACAGCCAAGCCCTGGGGCCCAGTCATCCTGCAGCAGTGACCACTCCCCGGCAGGGAG	TCATCTTCTCCACAGAAGCCACAGCCAAGCCCTGGGGCCCAGTCATCCTGCAGCAGTGACCACTCCCCGGCAGGGAG	-			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	57	386	0	ENST00000228682.2:c.1309-14_1371del		p.X437_splice	ENST00000228682	NM_005269.2	437																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103510629	103510629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	40	246	0	ENST00000355739.4:c.533A>G	p.Glu178Gly	p.E178G	ENST00000355739	NM_000123.3	178	gAg/gGg																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47607056	47607056	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	68	463	0	ENST00000263735.4:c.806T>C	p.Ile269Thr	p.I269T	ENST00000263735	NM_002354.2	269	aTt/aCt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165062	47165062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	58	278	0	ENST00000409792.3:c.1064C>T	p.Ser355Leu	p.S355L	ENST00000409792	NM_014159.6	355	tCa/tTa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439194	52439194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	85	701	2	ENST00000460680.1:c.1048C>A	p.Pro350Thr	p.P350T	ENST00000460680	NM_004656.3	350	Ccc/Acc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253741	153253755	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTTACCCTCTTCT	ACCTTACCCTCTTCT	-			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	38	270	0	ENST00000281708.4:c.978_985+7del		p.X326_splice	ENST00000281708	NM_033632.3	326																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153253760	153253780	+	inframe_deletion	In_Frame_Del	DEL	ATTTCTCTCTCCAGAGAAGGT	ATTTCTCTCTCCAGAGAAGGT	-			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	45	303	0	ENST00000281708.4:c.953_973del	p.Asn318_Cys325delinsSer	p.N318_C325delinsS	ENST00000281708	NM_033632.3	318	aACCTTCTCTGGAGAGAGAAATgc/agc																																																																														
SDHA	6389	MSKCC	GRCh37	5	231007	231007	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	108	675	0	ENST00000264932.6:c.787T>C	p.Tyr263His	p.Y263H	ENST00000264932	NM_004168.2	263	Tac/Cac																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858285	27858285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	105	612	2	ENST00000359303.2:c.286G>T	p.Ala96Ser	p.A96S	ENST00000359303	NM_003535.2	96	Gcg/Tcg																																																																														
RB1	5925	MSKCC	GRCh37	13	49033970	49033970	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	722	359	0	ENST00000267163.4:c.2106+1G>T		p.X702_splice	ENST00000267163	NM_000321.2	702																																																																															
YAP1	10413	MSKCC	GRCh37	11	101984893	101984893	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	293	518	0	ENST00000282441.5:c.340A>T	p.Thr114Ser	p.T114S	ENST00000282441	NM_001130145.2	114	Act/Tct																																																																														
YAP1	10413	MSKCC	GRCh37	11	102100481	102100481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	271	477	0	ENST00000282441.5:c.1325C>T	p.Pro442Leu	p.P442L	ENST00000282441	NM_001130145.2	442	cCa/cTa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	427272	427272	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	260	478	0	ENST00000399788.2:c.2897G>T	p.Arg966Ile	p.R966I	ENST00000399788	NM_001042603.1	966	aGa/aTa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563083	21563092	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTTGCTCT	GTCTTGCTCT	-			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	685	945	0	ENST00000382592.4:c.827_836del	p.Gln276ArgfsTer154	p.Q276Rfs*154	ENST00000382592	NM_014572.2	276	cAGAGCAAGACg/cg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43738705	43738705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	354	602	0	ENST00000382044.4:c.2920G>A	p.Gly974Arg	p.G974R	ENST00000382044	NM_001141980.1	974	Ggg/Agg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343542	343542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	189	821	1	ENST00000262320.3:c.2132G>T	p.Arg711Leu	p.R711L	ENST00000262320	NM_003502.3	711	cGc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29490313	29490313	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	301	499	0	ENST00000358273.4:c.398A>G	p.Glu133Gly	p.E133G	ENST00000358273	NM_001042492.2	133	gAa/gGa																																																																														
CIC	23152	MSKCC	GRCh37	19	42791163	42791163	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	395	866	0	ENST00000575354.2:c.223G>C	p.Ala75Pro	p.A75P	ENST00000575354	NM_015125.3	75	Gct/Cct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576821	212576821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	128	455	0	ENST00000342788.4:c.1078A>G	p.Thr360Ala	p.T360A	ENST00000342788	NM_005235.2	360	Acc/Gcc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161408	55161408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	137	457	0	ENST00000257290.5:c.3239C>G	p.Ser1080Cys	p.S1080C	ENST00000257290	NM_006206.4	1080	tCt/tGt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710887	117710887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	162	449	1	ENST00000368508.3:c.1385C>A	p.Pro462Gln	p.P462Q	ENST00000368508	NM_002944.2	462	cCa/cAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266491	55266491	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	183	582	0	ENST00000275493.2:c.2783A>T	p.Glu928Val	p.E928V	ENST00000275493	NM_005228.3	928	gAg/gTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021726	69021726	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	348	462	0	ENST00000288368.4:c.3014A>T	p.Gln1005Leu	p.Q1005L	ENST00000288368	NM_024870.2	1005	cAg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579579	7579580	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0050207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	645	709	0	ENST00000269305.4:c.107_108delinsT	p.Pro36LeufsTer8	p.P36Lfs*8	ENST00000269305	NM_001126112.2	36	cCG/cT																																																																														
CUL3	8452	MSKCC	GRCh37	2	225378351	225378351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	102	204	1	ENST00000264414.4:c.544G>A	p.Ala182Thr	p.A182T	ENST00000264414	NM_003590.4	182	Gca/Aca																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825602	50825602	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	129	316	0	ENST00000398568.2:c.2232+1G>T		p.X744_splice	ENST00000398568	NM_001042412.1	744																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TAT			P-0050208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	663	787	0	ENST00000269571.5:c.2326_2327insTAT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTATgt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0050209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	287	568	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73047270	73047270	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	143	356	0	ENST00000356692.5:c.77A>G	p.Asp26Gly	p.D26G	ENST00000356692		26	gAt/gGt																																																																														
ATRX	546	MSKCC	GRCh37	X	76888797	76888797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	210	260	0	ENST00000373344.5:c.5032G>T	p.Val1678Phe	p.V1678F	ENST00000373344	NM_000489.3	1678	Gtt/Ttt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0050216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	857	457	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			616	259	913	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302894	15302894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	229	1070	0	ENST00000263388.2:c.556C>A	p.Pro186Thr	p.P186T	ENST00000263388	NM_000435.2	186	Cca/Aca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211897	36211897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			798	225	887	0	ENST00000222270.7:c.1648G>A	p.Asp550Asn	p.D550N	ENST00000222270	NM_014727.1	550	Gac/Aac																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911560	131911560	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	217	390	0	ENST00000265335.6:c.305G>T	p.Cys102Phe	p.C102F	ENST00000265335		102	tGt/tTt																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137524762	137524768	+	protein_altering_variant	In_Frame_Del	DEL	CTAACTG	CTAACTG	T			P-0050216-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	105	416	0	ENST00000367739.4:c.601_607delinsA	p.Gln201_Ala203delinsThr	p.Q201_A203delinsT	ENST00000367739	NM_000416.2	201	CAGTTAGcg/Acg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52712598	52712598	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	43	380	0	ENST00000394830.3:c.154G>T	p.Glu52Ter	p.E52*	ENST00000394830	NM_018313.4	52	Gaa/Taa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183708	10183717	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCCCGTG	GCGGCCCGTG	-			P-0050228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	130	926	0	ENST00000256474.2:c.177_186del	p.Arg60CysfsTer4	p.R60Cfs*4	ENST00000256474	NM_000551.3	59	ccGCGGCCCGTG/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	43	125	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0050229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	134	280	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864656	37864656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	141	272	0	ENST00000269571.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000269571		103	cGa/cAa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15374334	15374334	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201883209		P-0050229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	49	184	0	ENST00000263377.2:c.1238G>A	p.Arg413His	p.R413H	ENST00000263377	NM_058243.2	413	cGt/cAt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226354	41226354	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	37	123	0	ENST00000357654.3:c.4669G>T	p.Asp1557Tyr	p.D1557Y	ENST00000357654	NM_007294.3	1557	Gat/Tat																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20152125	20152125	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0050229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	31	45	0	ENST00000379607.5:c.205G>T	p.Val69Phe	p.V69F	ENST00000379607	NM_001412.3	69	Gtt/Ttt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966653	44966654	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0050229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	43	42	0	ENST00000377967.4:c.3879dup		p.X1293_splice	ENST00000377967	NM_021140.2	1293																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	20	280	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	178	419	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642470	117642470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	85	588	0	ENST00000368508.3:c.5729G>A	p.Arg1910Gln	p.R1910Q	ENST00000368508	NM_002944.2	1910	cGa/cAa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134306	11134306	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	142	507	0	ENST00000344626.4:c.2972A>C	p.Lys991Thr	p.K991T	ENST00000344626	NM_003072.3	991	aAg/aCg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625302	69625302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	199	886	2	ENST00000334134.2:c.491G>A	p.Arg164His	p.R164H	ENST00000334134	NM_005247.2	164	cGc/cAc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244882	41244882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	120	467	0	ENST00000357654.3:c.2666C>T	p.Ser889Phe	p.S889F	ENST00000357654	NM_007294.3	889	tCt/tTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152079	11152080	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	39	500	0	ENST00000344626.4:c.4271dup	p.Thr1425AspfsTer30	p.T1425Dfs*30	ENST00000344626	NM_003072.3	1423	acc/aCcc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881440	37881440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	99	733	0	ENST00000269571.5:c.2632C>T	p.His878Tyr	p.H878Y	ENST00000269571		878	Cat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0050231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	79	726	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786752	3786752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	59	624	3	ENST00000262367.5:c.4459C>T	p.His1487Tyr	p.H1487Y	ENST00000262367	NM_004380.2	1487	Cac/Tac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418693	49418964	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGGCAGCCACAGGCTCAATGATGCGATTCCACACGGCTAAGAAGCAGGGAAGAGAGCAGTCCTCAGAGGCAACTTCTGCTCACTGACCTCCAGTCCCTAACCCCAATCCAGAACTGCAGTTTTCTGAGGCCTTCAAGCCTCCCTATCATGAAGTTGTGTTGGTCTTCCAGATCCTCTCTTGGCCTCCTAGTCTCACTCTCTCTTAAGAAGCAGGAGGTTTCCAACCCCAAGGGGTCATCACAGAGCCTTGAGATACAAACCCAGGGCCCAG	ATGGCAGCCACAGGCTCAATGATGCGATTCCACACGGCTAAGAAGCAGGGAAGAGAGCAGTCCTCAGAGGCAACTTCTGCTCACTGACCTCCAGTCCCTAACCCCAATCCAGAACTGCAGTTTTCTGAGGCCTTCAAGCCTCCCTATCATGAAGTTGTGTTGGTCTTCCAGATCCTCTCTTGGCCTCCTAGTCTCACTCTCTCTTAAGAAGCAGGAGGTTTCCAACCCCAAGGGGTCATCACAGAGCCTTGAGATACAAACCCAGGGCCCAG	-			P-0050231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	24	611	0	ENST00000301067.7:c.15785-235_15821del		p.X5262_splice	ENST00000301067	NM_003482.3	5262																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0050233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	259	520	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308312	15308313	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	CA			P-0050233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	158	703	1	ENST00000263388.2:c.195_196delinsTG	p.Leu66Val	p.L66V	ENST00000263388	NM_000435.2	65	tgCCtg/tgTGtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	468	997	0	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc																																																																														
SDHB	6390	MSKCC	GRCh37	1	17359587	17359587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	232	399	1	ENST00000375499.3:c.254C>T	p.Ser85Phe	p.S85F	ENST00000375499	NM_003000.2	85	tCt/tTt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746114	162746114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	160	347	0	ENST00000367921.3:c.2237G>A	p.Arg746Gln	p.R746Q	ENST00000367921	NM_006182.2	746	cGg/cAg																																																																														
BLM	641	MSKCC	GRCh37	15	91306237	91306237	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201458487		P-0050234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	160	317	1	ENST00000355112.3:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000355112	NM_000057.2	642	Gag/Aag																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099250	4099250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	556	1060	0	ENST00000262948.5:c.868G>A	p.Glu290Lys	p.E290K	ENST00000262948	NM_030662.3	290	Gag/Aag																																																																														
INSR	3643	MSKCC	GRCh37	19	7172322	7172322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	286	461	1	ENST00000302850.5:c.1247G>A	p.Arg416Gln	p.R416Q	ENST00000302850	NM_000208.2	416	cGa/cAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9520159	9520159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	241	537	1	ENST00000353224.5:c.2110G>T	p.Gly704Cys	p.G704C	ENST00000353224	NM_177990.2	704	Ggt/Tgt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52713664	52713664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	261	524	0	ENST00000394830.3:c.64G>T	p.Gly22Trp	p.G22W	ENST00000394830	NM_018313.4	22	Ggg/Tgg																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114032	73114032	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	28	76	0	ENST00000356692.5:c.669del	p.Ser224GlnfsTer2	p.S224Qfs*2	ENST00000356692		223	tCc/tc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249456	153249456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	125	526	0	ENST00000281708.4:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000281708	NM_033632.3	441	cGg/cAg																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872411	35872414	+	frameshift_variant	Frame_Shift_Del	DEL	AGTC	AGTC	-			P-0050235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	428	863	0	ENST00000216797.5:c.489_492del	p.Thr164SerfsTer12	p.T164Sfs*12	ENST00000216797	NM_020529.2	163	ctGACT/ct																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843455	3843455	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	118	590	0	ENST00000262367.5:c.1148C>G	p.Pro383Arg	p.P383R	ENST00000262367	NM_004380.2	383	cCg/cGg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413042	139413042	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0050235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	511	739	0	ENST00000277541.6:c.1099+1G>A		p.X367_splice	ENST00000277541	NM_017617.3	367																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	30	403	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0050237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	20	457	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108218045	108218045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	27	330	0	ENST00000278616.4:c.8624A>G	p.Asn2875Ser	p.N2875S	ENST00000278616	NM_000051.3	2875	aAt/aGt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs193921065		P-0050240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	44	498	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
APC	324	MSKCC	GRCh37	5	112175903	112175903	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	10	212	0	ENST00000257430.4:c.4612G>T	p.Glu1538Ter	p.E1538*	ENST00000257430	NM_000038.5	1538	Gaa/Taa																																																																														
SMO	6608	MSKCC	GRCh37	7	128845140	128845140	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	110	927	0	ENST00000249373.3:c.634G>C	p.Gly212Arg	p.G212R	ENST00000249373	NM_005631.4	212	Ggc/Cgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242482	+	protein_altering_variant	In_Frame_Del	DEL	GGAATTAAGAGAAGCAAC	GGAATTAAGAGAAGCAAC	AAT			P-0050241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	139	369	1	ENST00000275493.2:c.2235_2252delinsAAT	p.Glu746_Thr751delinsIle	p.E746_T751delinsI	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCAACa/aaAATa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921347	178921347	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	84	300	0	ENST00000263967.3:c.829A>C	p.Ile277Leu	p.I277L	ENST00000263967	NM_006218.2	277	Ata/Cta																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444452	50444452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	121	345	0	ENST00000331340.3:c.382G>A	p.Gly128Arg	p.G128R	ENST00000331340	NM_006060.4	128	Ggg/Agg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	230	666	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	230	666	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	230	666	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729271	41729271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	205	354	0	ENST00000242208.4:c.1258G>A	p.Val420Met	p.V420M	ENST00000242208	NM_002192.2	420	Gtg/Atg																																																																														
FH	2271	MSKCC	GRCh37	1	241682997	241682997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	198	647	0	ENST00000366560.3:c.26C>T	p.Ala9Val	p.A9V	ENST00000366560	NM_000143.3	9	gCg/gTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066841	30066841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	331	473	1	ENST00000331968.5:c.2290C>A	p.Leu764Ile	p.L764I	ENST00000331968	NM_002742.2	764	Cta/Ata																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	300	801	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983863	2983863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	208	667	0	ENST00000396946.4:c.667C>T	p.Arg223Ter	p.R223*	ENST00000396946	NM_032415.4	223	Cga/Tga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965935	25965935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	150	678	1	ENST00000435504.4:c.3271G>A	p.Ala1091Thr	p.A1091T	ENST00000435504		1091	Gct/Act																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423598	88423598	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	123	538	0	ENST00000360948.2:c.2237A>C	p.Lys746Thr	p.K746T	ENST00000360948	NM_001012338.2	746	aAg/aCg																																																																														
CDH1	999	MSKCC	GRCh37	16	68849649	68849649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	128	549	0	ENST00000261769.5:c.1552G>T	p.Glu518Ter	p.E518*	ENST00000261769	NM_004360.3	518	Gaa/Taa																																																																														
CDH1	999	MSKCC	GRCh37	16	68844178	68844178	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	179	614	0	ENST00000261769.5:c.766A>C	p.Asn256His	p.N256H	ENST00000261769	NM_004360.3	256	Aat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0050248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	67	518	0	ENST00000269305.4:c.783-2A>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NF1	4763	MSKCC	GRCh37	17	29665158	29665158	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0050248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	53	371	0	ENST00000358273.4:c.6819+1G>T		p.X2273_splice	ENST00000358273	NM_001042492.2	2273																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672363	86672367	+	frameshift_variant	Frame_Shift_Del	DEL	AGTAC	AGTAC	-			P-0050248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	30	255	0	ENST00000274376.6:c.2168_2172del	p.Tyr723Ter	p.Y723*	ENST00000274376	NM_002890.2	722	gAGTAC/g																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170180	32170180	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	50	911	0	ENST00000375023.3:c.3428A>T	p.Asn1143Ile	p.N1143I	ENST00000375023	NM_004557.3	1143	aAt/aTt																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480607	123480607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	44	576	0	ENST00000371139.4:c.115G>T	p.Gly39Cys	p.G39C	ENST00000371139	NM_001114937.2	39	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	40	791	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0050250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	49	411	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577064	7577064	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0050250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	59	700	0	ENST00000269305.4:c.874A>T	p.Lys292Ter	p.K292*	ENST00000269305	NM_001126112.2	292	Aaa/Taa																																																																														
JUN	3725	MSKCC	GRCh37	1	59247872	59247872	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	61	816	0	ENST00000371222.2:c.871A>C	p.Asn291His	p.N291H	ENST00000371222	NM_002228.3	291	Aac/Cac																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	50	530	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
EP300	2033	MSKCC	GRCh37	22	41513377	41513377	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	67	543	0	ENST00000263253.7:c.281A>G	p.Asn94Ser	p.N94S	ENST00000263253	NM_001429.3	94	aAt/aGt																																																																														
MET	4233	MSKCC	GRCh37	7	116411858	116411894	+	intron_variant	Intron	DEL	ATGATAGCCGTCTTTAACAAGCTCTTTCTTTCTCTCT	ATGATAGCCGTCTTTAACAAGCTCTTTCTTTCTCTCT	-			P-0050251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	168	704	0	ENST00000397752.3:c.2888-45_2888-9del		p.*963*	ENST00000397752	NM_000245.2																																																																																
MTOR	2475	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	127	586	0	ENST00000361445.4:c.7280T>A	p.Leu2427Gln	p.L2427Q	ENST00000361445	NM_004958.3	2427	cTg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971180	21971180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	284	495	0	ENST00000304494.5:c.178delG	p.Ala60ArgfsTer86	p.A60Rfs*86	ENST00000304494	NM_000077.4	60	Gcg/cg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971180	21971180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	284	495	0	ENST00000304494.5:c.178delG	p.Ala60ArgfsTer86	p.A60Rfs*86	ENST00000304494	NM_000077.4	60	Gcg/cg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971180	21971180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	284	495	0	ENST00000304494.5:c.178delG	p.Ala60ArgfsTer86	p.A60Rfs*86	ENST00000304494	NM_000077.4	60	Gcg/cg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589632	67589643	+	inframe_deletion	In_Frame_Del	DEL	ATTATATGAAGA	ATTATATGAAGA	-			P-0050253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	56	181	0	ENST00000274335.5:c.1397_1408del	p.Leu466_Glu469del	p.L466_E469del	ENST00000274335		465	agATTATATGAAGAa/aga																																																																														
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	71	357	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	198	623	0	ENST00000269305.4:c.706T>A	p.Tyr236Asn	p.Y236N	ENST00000269305	NM_001126112.2	236	Tac/Aac																																																																														
MCL1	4170	MSKCC	GRCh37	1	150552004	150552004	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	61	567	0	ENST00000369026.2:c.3G>A	p.Met1?	p.M1?	ENST00000369026	NM_021960.4	1	atG/atA																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473704	67473704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	147	704	0	ENST00000327367.4:c.784G>T	p.Asp262Tyr	p.D262Y	ENST00000327367	NM_005902.3	262	Gac/Tac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251773	212251773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	44	398	0	ENST00000342788.4:c.3286G>A	p.Gly1096Ser	p.G1096S	ENST00000342788	NM_005235.2	1096	Ggt/Agt																																																																														
SMO	6608	MSKCC	GRCh37	7	128848652	128848652	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	67	803	0	ENST00000249373.3:c.1317G>C	p.Glu439Asp	p.E439D	ENST00000249373	NM_005631.4	439	gaG/gaC																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981217	201981217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	195	1074	0	ENST00000359651.3:c.296G>A	p.Gly99Asp	p.G99D	ENST00000359651		99	gGc/gAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0050257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	55	705	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-			P-0050257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	129	439	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	100	438	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112116486	112116486	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0050259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	21	236	0	ENST00000257430.4:c.532-1G>A		p.X178_splice	ENST00000257430	NM_000038.5	178																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38271456	38271456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	52	1027	3	ENST00000425967.3:c.2365G>A	p.Val789Met	p.V789M	ENST00000425967	NM_001174067.1	789	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	281	492	0				ENST00000310581	NM_198253.2																																																																																
MAP2K1	5604	MSKCC	GRCh37	15	66729153	66729153	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	251	771	0	ENST00000307102.5:c.361T>A	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	121	Tgc/Agc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	127	464	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935496	13935497	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0050261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	128	352	0	ENST00000405192.2:c.1359_1360del	p.Tyr454LeufsTer62	p.Y454Lfs*62	ENST00000405192	NM_001163147.1	453	gtGTat/gtat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47129632	47129632	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	107	427	0	ENST00000409792.3:c.5248C>T	p.Gln1750Ter	p.Q1750*	ENST00000409792	NM_014159.6	1750	Cag/Tag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098859	47098859	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	375	808	2	ENST00000409792.3:c.6415C>T	p.Gln2139Ter	p.Q2139*	ENST00000409792	NM_014159.6	2139	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	319	371	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0050264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	134	307	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0050264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	143	316	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	260	649	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	181	442	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	394	1088	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	113	427	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	188	753	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120497754	120497754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	172	608	0	ENST00000256646.2:c.2128G>A	p.Glu710Lys	p.E710K	ENST00000256646	NM_024408.3	710	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524714	187524714	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192691397		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	79	815	1	ENST00000441802.2:c.10966G>A	p.Val3656Ile	p.V3656I	ENST00000441802	NM_005245.3	3656	Gtt/Att																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	29	362	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	184	435	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	20	364	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226423	2226423	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	362	1257	1	ENST00000398665.3:c.3907del	p.Ala1303LeufsTer24	p.A1303Lfs*24	ENST00000398665	NM_032482.2	1301	tcG/tc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	14	261	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	221	764	0	ENST00000269305.4:c.102dupC	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																														
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	81	1170	1	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	179	825	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	49	645	1	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	116	442	10	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	79	927	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661836	227661836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	78	970	0	ENST00000305123.5:c.1619C>T	p.Pro540Leu	p.P540L	ENST00000305123	NM_005544.2	540	cCg/cTg																																																																														
B2M	567	MSKCC	GRCh37	15	45007688	45007688	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	97	413	1	ENST00000558401.1:c.135C>A	p.Cys45Ter	p.C45*	ENST00000558401	NM_004048.2	45	tgC/tgA																																																																														
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	25	273	0	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793677	89793677	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	19	435	2	ENST00000336032.3:c.752del	p.Lys251SerfsTer14	p.K251Sfs*14	ENST00000336032	NM_006813.2	249	gAa/ga																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481454	20481455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	37	313	0	ENST00000346618.3:c.529dup	p.Thr177AsnfsTer4	p.T177Nfs*4	ENST00000346618	NM_001949.4	175	gaa/gAaa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	185	955	2	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																														
PIM1	5292	MSKCC	GRCh37	6	37138563	37138563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	239	893	1	ENST00000373509.5:c.97C>T	p.Pro33Ser	p.P33S	ENST00000373509	NM_002648.3	33	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460504	8460504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148300682		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	187	532	0	ENST00000356435.5:c.3782C>T	p.Thr1261Met	p.T1261M	ENST00000356435		1261	aCg/aTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	129	525	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	25	92	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739894	41739894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	155	569	0	ENST00000242208.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000242208	NM_002192.2	27	Gag/Aag																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226049	2226049	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	69	982	1	ENST00000326181.6:c.1747-1G>T		p.X583_splice	ENST00000326181	NM_032271.2	583																																																																															
ABL1	25	MSKCC	GRCh37	9	133760430	133760430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	88	957	2	ENST00000318560.5:c.2753C>T	p.Pro918Leu	p.P918L	ENST00000318560	NM_005157.4	918	cCg/cTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517874	187517874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	50	511	1	ENST00000441802.2:c.12820G>A	p.Glu4274Lys	p.E4274K	ENST00000441802	NM_005245.3	4274	Gaa/Aaa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243975	5243975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	71	828	0	ENST00000357368.4:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000357368	NM_002850.3	503	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132814	152132815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	149	749	0	ENST00000262189.6:c.57dup	p.Glu20ArgfsTer39	p.E20Rfs*39	ENST00000262189	NM_170606.2	19	-/C																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554306	81554306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	29	370	0	ENST00000298171.2:c.326G>A	p.Arg109Gln	p.R109Q	ENST00000298171	NM_000369.2	109	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912485	50912485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	62	899	1	ENST00000440232.2:c.1999C>T	p.Arg667Trp	p.R667W	ENST00000440232	NM_002691.3	667	Cgg/Tgg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126085	2126085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	153	947	0	ENST00000219476.3:c.2656G>T	p.Val886Leu	p.V886L	ENST00000219476	NM_000548.3	886	Gtg/Ttg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867714	45867714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	304	1025	0	ENST00000391945.4:c.686C>T	p.Ala229Val	p.A229V	ENST00000391945	NM_000400.3	229	gCc/gTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190704	11190704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	322	945	1	ENST00000361445.4:c.5495C>T	p.Ala1832Val	p.A1832V	ENST00000361445	NM_004958.3	1832	gCc/gTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254653	16254653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	40	524	0	ENST00000375759.3:c.1918G>T	p.Gly640Cys	p.G640C	ENST00000375759	NM_015001.2	640	Ggc/Tgc																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156620	2156620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	78	838	0	ENST00000434045.2:c.302G>A	p.Cys101Tyr	p.C101Y	ENST00000434045	NM_001127598.1	101	tGt/tAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435197	18435197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	22	399	0	ENST00000266497.5:c.182A>G	p.Asn61Ser	p.N61S	ENST00000266497		61	aAc/aGc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230704	46230704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	24	385	0	ENST00000334344.6:c.953T>C	p.Leu318Pro	p.L318P	ENST00000334344	NM_152641.2	318	cTt/cCt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426580	49426580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	106	994	0	ENST00000301067.7:c.11908C>A	p.Gln3970Lys	p.Q3970K	ENST00000301067	NM_003482.3	3970	Cag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133240999	133240999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	212	791	1	ENST00000320574.5:c.2518G>A	p.Ala840Thr	p.A840T	ENST00000320574	NM_006231.2	840	Gcc/Acc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107748	30107748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	152	621	0	ENST00000331968.5:c.932G>A	p.Arg311His	p.R311H	ENST00000331968	NM_002742.2	311	cGt/cAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862910	9862910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	35	659	0	ENST00000330684.3:c.2393G>A	p.Gly798Glu	p.G798E	ENST00000330684	NM_001134407.1	798	gGg/gAg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462592	40462592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	83	751	0	ENST00000345506.4:c.2290G>A	p.Val764Met	p.V764M	ENST00000345506	NM_003152.3	764	Gtg/Atg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40870591	40870591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	205	841	0	ENST00000428826.2:c.812del	p.Pro271LeufsTer97	p.P271Lfs*97	ENST00000428826		271	cCt/ct																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78617573	78617573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	115	422	0	ENST00000306801.3:c.311C>T	p.Ala104Val	p.A104V	ENST00000306801	NM_020761.2	104	gCa/gTa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2202721	2202721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	199	823	0	ENST00000398665.3:c.730G>A	p.Ala244Thr	p.A244T	ENST00000398665	NM_032482.2	244	Gcc/Acc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627759	14627759	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	198	827	0	ENST00000254322.2:c.311A>G	p.Glu104Gly	p.E104G	ENST00000254322	NM_006145.1	104	gAg/gGg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221508	36221508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	127	994	1	ENST00000222270.7:c.5267T>A	p.Ile1756Asn	p.I1756N	ENST00000222270	NM_014727.1	1756	aTt/aAt																																																																														
ERF	2077	MSKCC	GRCh37	19	42753602	42753602	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	59	1078	3	ENST00000222329.4:c.662del	p.Pro221ArgfsTer50	p.P221Rfs*50	ENST00000222329	NM_006494.2	221	cCg/cg																																																																														
ALK	238	MSKCC	GRCh37	2	29446266	29446266	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	217	754	0	ENST00000389048.3:c.3301A>G	p.Lys1101Glu	p.K1101E	ENST00000389048	NM_004304.4	1101	Aag/Gag																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46597036	46597036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	49	537	0	ENST00000263734.3:c.850C>A	p.Leu284Ile	p.L284I	ENST00000263734	NM_001430.4	284	Cta/Ata																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027538	48027538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	26	361	0	ENST00000234420.5:c.2416T>C	p.Ser806Pro	p.S806P	ENST00000234420	NM_000179.2	806	Tcc/Ccc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57466844	57466844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	44	382	0	ENST00000371085.3:c.63G>T	p.Glu21Asp	p.E21D	ENST00000371085	NM_000516.4	21	gaG/gaT																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799574	72799574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	184	574	0	ENST00000325599.8:c.1595T>C	p.Leu532Pro	p.L532P	ENST00000325599	NM_018130.2	532	cTt/cCt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35861058	35861058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	102	414	0	ENST00000303115.3:c.187G>T	p.Asp63Tyr	p.D63Y	ENST00000303115	NM_002185.3	63	Gat/Tat																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874644	35874644	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	92	433	0	ENST00000303115.3:c.800G>T	p.Arg267Met	p.R267M	ENST00000303115	NM_002185.3	267	aGg/aTg																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158577	26158577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	56	703	0	ENST00000289316.2:c.180G>T	p.Met60Ile	p.M60I	ENST00000289316	NM_138720.2	60	atG/atT																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652194	36652194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	276	928	0	ENST00000244741.5:c.316G>A	p.Ala106Thr	p.A106T	ENST00000244741	NM_000389.4	106	Gca/Aca																																																																														
FYN	2534	MSKCC	GRCh37	6	111983033	111983033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	259	799	0	ENST00000368678.4:c.1514A>G	p.Glu505Gly	p.E505G	ENST00000368678		505	gAa/gGa																																																																														
FYN	2534	MSKCC	GRCh37	6	111983103	111983103	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	61	687	0	ENST00000368678.4:c.1444A>G	p.Met482Val	p.M482V	ENST00000368678		482	Atg/Gtg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444309	50444309	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	116	370	0	ENST00000331340.3:c.239A>G	p.Glu80Gly	p.E80G	ENST00000331340	NM_006060.4	80	gAg/gGg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69012046	69012046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	152	552	0	ENST00000288368.4:c.2683C>A	p.His895Asn	p.H895N	ENST00000288368	NM_024870.2	895	Cac/Aac																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87325642	87325642	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	110	586	0	ENST00000277120.3:c.519T>A	p.Asp173Glu	p.D173E	ENST00000277120		173	gaT/gaA																																																																														
AR	367	MSKCC	GRCh37	X	66765440	66765440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	221	998	0	ENST00000374690.3:c.452C>T	p.Ala151Val	p.A151V	ENST00000374690	NM_000044.3	151	gCa/gTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937662	76937662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	22	494	1	ENST00000373344.5:c.3086C>A	p.Pro1029His	p.P1029H	ENST00000373344	NM_000489.3	1029	cCt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	79	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0050269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	113	474	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	75	235	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	50	217	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0050269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	68	283	1	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696462	47696462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	79	355	0	ENST00000347630.2:c.361C>T	p.Arg121Trp	p.R121W	ENST00000347630	NM_001007230.1	121	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717678	89717679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGAC			P-0050269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	75	379	0	ENST00000371953.3:c.707_711dup	p.Phe238ThrfsTer20	p.F238Tfs*20	ENST00000371953	NM_000314.4	235	gaa/gAAGACaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663437	67663437	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0050269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	44	222	0	ENST00000264010.4:c.1837+1G>C		p.X613_splice	ENST00000264010	NM_006565.3	613																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589614	67589635	+	protein_altering_variant	In_Frame_Del	DEL	AAGTCGAGAATATGATAGATTA	AAGTCGAGAATATGATAGATTA	T			P-0050269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	10	177	0	ENST00000274335.5:c.1377_1398delinsT	p.Lys459_Leu466delinsAsn	p.K459_L466delinsN	ENST00000274335		459	aaAAGTCGAGAATATGATAGATTA/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	16	325	2	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	30	211	0	ENST00000345146.2:c.394C>A	p.Arg132Ser	p.R132S	ENST00000345146	NM_005896.2	132	Cgt/Agt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79968135	79968135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	55	471	0	ENST00000265081.6:c.865A>G	p.Arg289Gly	p.R289G	ENST00000265081	NM_002439.4	289	Aga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	596	481	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	289	429	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29664899	29664899	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0050271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	454	262	0	ENST00000358273.4:c.6704+1G>C		p.X2235_splice	ENST00000358273	NM_001042492.2	2235																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	171	277	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																														
ARAF	369	MSKCC	GRCh37	X	47428962	47428962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	276	593	0	ENST00000377045.4:c.1325C>T	p.Thr442Met	p.T442M	ENST00000377045	NM_001654.4	442	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518169	187518169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	222	333	0	ENST00000441802.2:c.12525G>T	p.Trp4175Cys	p.W4175C	ENST00000441802	NM_005245.3	4175	tgG/tgT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	198	378	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	109	401	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579269	7579474	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGG	GGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGG	-			P-0050272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	210	381	0	ENST00000269305.4:c.213_375+43del		p.X71_splice	ENST00000269305	NM_001126112.2	71																																																																															
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	397	715	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	634	401	2	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	389	623	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	389	623	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	309	364	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	389	623	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46724370	46724370	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138566817		P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	76	409	0	ENST00000371975.4:c.223C>T	p.Arg75Ter	p.R75*	ENST00000371975	NM_003579.3	75	Cga/Tga																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30315354	30315354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	93	306	0	ENST00000322652.5:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000322652	NM_015355.2	347	Gaa/Aaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70404607	70404609	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	193	400	1	ENST00000373644.4:c.2122_2124del	p.Glu708del	p.E708del	ENST00000373644	NM_030625.2	707	gtGGAg/gtg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622618	158622618	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	175	349	0	ENST00000263640.3:c.881A>G	p.Tyr294Cys	p.Y294C	ENST00000263640	NM_001105.4	294	tAt/tGt																																																																														
IRF4	3662	MSKCC	GRCh37	6	394875	394875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	158	393	0	ENST00000380956.4:c.271C>T	p.Pro91Ser	p.P91S	ENST00000380956	NM_001195286.1	91	Ccc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0050278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	20	349	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498206	498206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	34	399	0	ENST00000399788.2:c.52G>A	p.Glu18Lys	p.E18K	ENST00000399788	NM_001042603.1	18	Gag/Aag																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502455	186502455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	25	263	0	ENST00000323963.5:c.178C>T	p.Gln60Ter	p.Q60*	ENST00000323963		60	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	17	40	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	74	319	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	11	75	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	61	296	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	61	296	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	61	296	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160638	56160639	+	missense_variant	Missense_Mutation	DNP	AA	AA	CC			P-0050280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	12	80	0	ENST00000399503.3:c.912_913delinsCC	p.Asn305His	p.N305H	ENST00000399503	NM_005921.1	304	acAAac/acCCac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	55	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0050283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	62	618	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118366483	118366483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	35	390	3	ENST00000534358.1:c.5432G>A	p.Arg1811Gln	p.R1811Q	ENST00000534358	NM_005933.3	1811	cGa/cAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0050286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	132	573	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10260269	10260269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	84	608	0	ENST00000340748.4:c.2398G>A	p.Gly800Arg	p.G800R	ENST00000340748		800	Ggg/Agg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998136	169998136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	67	386	0	ENST00000295797.4:c.827C>G	p.Thr276Arg	p.T276R	ENST00000295797	NM_002740.5	276	aCa/aGa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034418	47034421	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GTCA	GTCA	-			P-0050286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	64	656	0	ENST00000329236.7:c.273_276del	p.Gln92AlafsTer96	p.Q92Afs*96	ENST00000329236	NM_001204466.1	91	gGTCAg/gg																																																																														
VHL	7428	MSKCC	GRCh37	3	10188272	10188273	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0050288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	119	535	0	ENST00000256474.2:c.419_420del	p.Leu140GlnfsTer3	p.L140Qfs*3	ENST00000256474	NM_000551.3	139	TCt/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0050289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	310	657	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	134	215	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106556	27106556	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	60	912	1	ENST00000324856.7:c.6167T>A	p.Leu2056His	p.L2056H	ENST00000324856	NM_006015.4	2056	cTc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653805	89653805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	16	398	0	ENST00000371953.3:c.103A>G	p.Met35Val	p.M35V	ENST00000371953	NM_000314.4	35	Atg/Gtg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692887	89692887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	16	356	0	ENST00000371953.3:c.371G>T	p.Cys124Phe	p.C124F	ENST00000371953	NM_000314.4	124	tGt/tTt																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	36	563	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3795277	3795277	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0050290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	21	471	0	ENST00000262367.5:c.3914+1G>T		p.X1305_splice	ENST00000262367	NM_004380.2	1305																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0050290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	34	542	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0050290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	35	357	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374298	138374298	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	160	417	0	ENST00000289153.2:c.3146T>G	p.Leu1049Arg	p.L1049R	ENST00000289153	NM_006219.2	1049	cTc/cGc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753764	42753764	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	205	742	0	ENST00000222329.4:c.500del	p.Ser167TyrfsTer104	p.S167Yfs*104	ENST00000222329	NM_006494.2	167	tCa/ta																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960013	134960013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	170	478	0	ENST00000398015.3:c.2370G>T	p.Trp790Cys	p.W790C	ENST00000398015	NM_004441.4	790	tgG/tgT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629410	187629410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	85	543	0	ENST00000441802.2:c.1572C>G	p.Asn524Lys	p.N524K	ENST00000441802	NM_005245.3	524	aaC/aaG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	48	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	60	603	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	124	382	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9560804	9560804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	49	381	0	ENST00000353224.5:c.978G>A	p.Met326Ile	p.M326I	ENST00000353224	NM_177990.2	326	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	81	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	99	633	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63661984	63661985	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	41	391	0	ENST00000279873.7:c.88_89insT	p.Glu30ValfsTer45	p.E30Vfs*45	ENST00000279873	NM_032199.2	30	gaa/gTaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435912	56435912	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	92	635	0	ENST00000407977.2:c.1225del	p.Gln409SerfsTer10	p.Q409Sfs*10	ENST00000407977		409	Cag/ag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212652798	212652798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	11	403	0	ENST00000342788.4:c.508C>A	p.Pro170Thr	p.P170T	ENST00000342788	NM_005235.2	170	Cca/Aca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970969	21970969	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	177	566	0	ENST00000304494.5:c.389T>G	p.Leu130Arg	p.L130R	ENST00000304494	NM_000077.4	130	cTg/cGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970969	21970969	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	177	566	0	ENST00000304494.5:c.389T>G	p.Leu130Arg	p.L130R	ENST00000304494	NM_000077.4	130	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	133	522	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011144	12011144	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	113	393	0	ENST00000353533.5:c.551C>A	p.Ser184Ter	p.S184*	ENST00000353533	NM_003010.3	184	tCg/tAg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TCT			P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	921	591	0	ENST00000269571.5:c.2326_2327insTCT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTCTgt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138897	64138898	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGT			P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	100	557	0	ENST00000334205.4:c.2267_2269dup	p.Val756dup	p.V756dup	ENST00000334205	NM_003942.2	756	ccc/ccCGTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914700	32914700	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	141	436	0	ENST00000380152.3:c.6208G>C	p.Glu2070Gln	p.E2070Q	ENST00000380152		2070	Gaa/Caa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88727523	88727523	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	73	406	0	ENST00000360948.2:c.256G>C	p.Glu86Gln	p.E86Q	ENST00000360948	NM_001012338.2	86	Gag/Cag																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182252	38182252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	227	459	0	ENST00000396334.3:c.688C>A	p.Arg230Ser	p.R230S	ENST00000396334	NM_002468.4	230	Cgc/Agc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	26	306	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	55	421	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	23	369	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	39	488	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7989385	7989385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200663524		P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	30	750	1	ENST00000319144.4:c.301G>A	p.Ala101Thr	p.A101T	ENST00000319144	NM_001139.2	101	Gcc/Acc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374887	45374887	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	28	456	0	ENST00000262160.6:c.956T>C	p.Val319Ala	p.V319A	ENST00000262160	NM_005901.5	319	gTt/gCt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3831308	3831308	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	27	289	0	ENST00000262367.5:c.1574-1G>A		p.X525_splice	ENST00000262367	NM_004380.2	525																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66509128	66509128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	42	286	0	ENST00000273854.3:c.199C>T	p.Arg67Cys	p.R67C	ENST00000273854	NM_004439.5	67	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108172446	108172446	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	38	380	0	ENST00000278616.4:c.5249G>A	p.Trp1750Ter	p.W1750*	ENST00000278616	NM_000051.3	1750	tGg/tAg																																																																														
APC	324	MSKCC	GRCh37	5	112174989	112174990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGT			P-0050315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	40	216	0	ENST00000257430.4:c.3699_3702dup	p.Ser1235LysfsTer6	p.S1235Kfs*6	ENST00000257430	NM_000038.5	1233	cca/ccAAGTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	267	343	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0050316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	93	434	3	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057792	27057792	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0050316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	306	577	0	ENST00000324856.7:c.1500T>A	p.Tyr500Ter	p.Y500*	ENST00000324856	NM_006015.4	500	taT/taA																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988415	36988415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	46	349	1	ENST00000354822.5:c.238A>G	p.Thr80Ala	p.T80A	ENST00000354822	NM_001079668.2	80	Aca/Gca																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40456375	40456375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	395	466	0	ENST00000345506.4:c.1185G>C	p.Glu395Asp	p.E395D	ENST00000345506	NM_003152.3	395	gaG/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	60	385	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	23	292	0	ENST00000371953.3:c.376G>T	p.Ala126Ser	p.A126S	ENST00000371953	NM_000314.4	126	Gct/Tct																																																																														
CCND1	595	MSKCC	GRCh37	11	69466026	69466028	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	76	699	0	ENST00000227507.2:c.866_868delACG	p.Asp289del	p.D289del	ENST00000227507	NM_053056.2	288	acCGAc/acc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720805	89720806	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	25	171	0	ENST00000371953.3:c.959dupT	p.Leu320PhefsTer5	p.L320Ffs*5	ENST00000371953	NM_000314.4	319	act/acTt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	63	763	9	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107092	27107093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	127	458	0	ENST00000324856.7:c.6706dup	p.Arg2236ProfsTer42	p.R2236Pfs*42	ENST00000324856	NM_006015.4	2235	gcc/gCcc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782307	56782307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	50	499	2	ENST00000308159.5:c.148C>T	p.Arg50Cys	p.R50C	ENST00000308159	NM_014669.4	50	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101364	27101364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	53	671	1	ENST00000324856.7:c.4646G>A	p.Gly1549Asp	p.G1549D	ENST00000324856	NM_006015.4	1549	gGc/gAc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36938144	36938144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	46	697	3	ENST00000361632.4:c.817C>T	p.Gln273Ter	p.Q273*	ENST00000361632		273	Cag/Tag																																																																														
SESN3	143686	MSKCC	GRCh37	11	94906469	94906469	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	25	314	0	ENST00000536441.1:c.1429C>T	p.Gln477Ter	p.Q477*	ENST00000536441	NM_144665.3	477	Caa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133249316	133249316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116263919		P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	48	622	1	ENST00000320574.5:c.1583C>T	p.Thr528Met	p.T528M	ENST00000320574	NM_006231.2	528	aCg/aTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639991	3639991	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	42	644	0	ENST00000294008.3:c.3648G>C	p.Gln1216His	p.Q1216H	ENST00000294008	NM_032444.2	1216	caG/caC																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14026043	14026043	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	26	249	0	ENST00000311895.7:c.1003A>G	p.Met335Val	p.M335V	ENST00000311895	NM_005236.2	335	Atg/Gtg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59924477	59924495	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGTTTATCTTTTCCAGT	GGAGTTTATCTTTTCCAGT	-			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	24	257	0	ENST00000259008.2:c.594_612del	p.Leu199PhefsTer69	p.L199Ffs*69	ENST00000259008	NM_032043.2	198	ccACTGGAAAAGATAAACTCC/cc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213284	39213284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	44	550	0	ENST00000402219.2:c.3683G>A	p.Ser1228Asn	p.S1228N	ENST00000402219	NM_005633.3	1228	aGc/aAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251990	153251990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	39	381	0	ENST00000281708.4:c.1016G>T	p.Arg339Ile	p.R339I	ENST00000281708	NM_033632.3	339	aGa/aTa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80064704	80064705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	42	335	0	ENST00000265081.6:c.2141dup	p.Arg715GlufsTer4	p.R715Efs*4	ENST00000265081	NM_002439.4	712	ata/atAa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0050351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	349	657	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	730	625	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
CDC42	998	MSKCC	GRCh37	1	22412941	22412941	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	72	159	0	ENST00000344548.3:c.188A>T	p.Asp63Val	p.D63V	ENST00000344548	NM_001039802.1	63	gAt/gTt																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2636830	2636834	+	frameshift_variant	Frame_Shift_Del	DEL	GACTT	GACTT	-			P-0050351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	353	626	0	ENST00000342085.4:c.1279_1283del	p.Asp427ThrfsTer6	p.D427Tfs*6	ENST00000342085	NM_002613.4	427	GACTTa/a																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117587	4117587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	53	459	1	ENST00000262948.5:c.133G>A	p.Glu45Lys	p.E45K	ENST00000262948	NM_030662.3	45	Gaa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142277557	142277557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	96	393	0	ENST00000350721.4:c.1794G>T	p.Trp598Cys	p.W598C	ENST00000350721	NM_001184.3	598	tgG/tgT																																																																														
MED12	9968	MSKCC	GRCh37	X	70349900	70349900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	119	139	0	ENST00000374080.3:c.3883C>T	p.Arg1295Cys	p.R1295C	ENST00000374080		1295	Cgt/Tgt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141498	11141498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	49	700	2	ENST00000344626.4:c.3475G>T	p.Gly1159Trp	p.G1159W	ENST00000344626	NM_003072.3	1159	Ggg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158239	47158242	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0050355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	13	293	0	ENST00000409792.3:c.4457_4460del	p.Lys1486ArgfsTer28	p.K1486Rfs*28	ENST00000409792	NM_014159.6	1486	aAGAAg/ag																																																																														
KIT	3815	MSKCC	GRCh37	4	55575658	55575658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	34	459	0	ENST00000288135.5:c.1184C>A	p.Ser395Tyr	p.S395Y	ENST00000288135	NM_000222.2	395	tCc/tAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106245	27106258	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGATCCTAGAGG	CAAGATCCTAGAGG	-			P-0050355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	41	548	0	ENST00000324856.7:c.5856_5869del	p.Lys1953ArgfsTer5	p.K1953Rfs*5	ENST00000324856	NM_006015.4	1952	atCAAGATCCTAGAGGac/atac																																																																														
ATM	472	MSKCC	GRCh37	11	108160412	108160416	+	frameshift_variant	Frame_Shift_Del	DEL	AATAT	AATAT	-			P-0050355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	28	382	0	ENST00000278616.4:c.4321_4325del	p.Ile1441SerfsTer5	p.I1441Sfs*5	ENST00000278616	NM_000051.3	1440	aaAATATat/aaat																																																																														
VHL	7428	MSKCC	GRCh37	3	10191470	10191472	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GTG	GTG	T			P-0050355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	24	367	0	ENST00000256474.2:c.464-1_465delinsT		p.X155_splice	ENST00000256474	NM_000551.3	155																																																																															
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	149	754	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	104	430	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	93	323	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5219970	5219970	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116545788		P-0050356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	84	687	1	ENST00000357368.4:c.3745G>A	p.Val1249Met	p.V1249M	ENST00000357368	NM_002850.3	1249	Gtg/Atg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411447	63411447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	69	749	1	ENST00000330258.3:c.1720C>T	p.Arg574Trp	p.R574W	ENST00000330258	NM_152424.3	574	Cgg/Tgg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288635	33288635	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138014437		P-0050356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	59	505	0	ENST00000374542.5:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000374542	NM_001141970.1	306	cGa/cAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0050384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	64	690	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038879	47038879	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	89	874	0	ENST00000329236.7:c.655G>T	p.Glu219Ter	p.E219*	ENST00000329236	NM_001204466.1	219	Gag/Tag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638569	176638569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	45	686	0	ENST00000439151.2:c.3169A>G	p.Asn1057Asp	p.N1057D	ENST00000439151	NM_022455.4	1057	Aat/Gat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0050387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	49	446	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	71	606	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444435	50444435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	37	298	1	ENST00000331340.3:c.365G>T	p.Cys122Phe	p.C122F	ENST00000331340	NM_006060.4	122	tGt/tTt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410344	63410344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	61	696	0	ENST00000330258.3:c.2823C>A	p.Ser941Arg	p.S941R	ENST00000330258	NM_152424.3	941	agC/agA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	152	725	31	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112173251	112173251	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0050392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	12	175	0	ENST00000257430.4:c.1960C>T	p.Gln654Ter	p.Q654*	ENST00000257430	NM_000038.5	654	Caa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385239	41385239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	275	666	1	ENST00000373198.4:c.722G>A	p.Arg241His	p.R241H	ENST00000373198	NM_133170.3	241	cGt/cAt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439308	52439334	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATCTGAGACAGGGCAAGAACACAGGC	CATCTGAGACAGGGCAAGAACACAGGC	A			P-0050394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	196	587	0	ENST00000460680.1:c.932-24_934delinsT		p.X311_splice	ENST00000460680	NM_004656.3	311																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	173	419	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	96	225	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0050395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	168	368	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997825	149997826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	266	486	0	ENST00000253339.5:c.2641dup	p.Asp881GlyfsTer40	p.D881Gfs*40	ENST00000253339		881	gat/gGat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5066739	5066739	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	165	323	0	ENST00000381652.3:c.1276C>T	p.Arg426Ter	p.R426*	ENST00000381652	NM_004972.3	426	Cga/Tga																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271294	26271294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	309	543	0	ENST00000305910.3:c.319G>A	p.Asp107Asn	p.D107N	ENST00000305910	NM_003534.2	107	Gat/Aat																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379676	17379676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	264	578	0	ENST00000359435.4:c.61G>T	p.Ala21Ser	p.A21S	ENST00000359435	NM_001033549.1	21	Gca/Tca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268151	153268151	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	249	310	0	ENST00000281708.4:c.657del	p.Gln220AsnfsTer19	p.Q220Nfs*19	ENST00000281708	NM_033632.3	219	ggG/gg																																																																														
APC	324	MSKCC	GRCh37	5	112174323	112174323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	159	261	0	ENST00000257430.4:c.3032C>A	p.Ala1011Glu	p.A1011E	ENST00000257430	NM_000038.5	1011	gCa/gAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	35	400	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	75	261	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	153	382	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577137	7577137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0050397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	208	602	0	ENST00000269305.4:c.801del	p.Asn268ThrfsTer77	p.N268Tfs*77	ENST00000269305	NM_001126112.2	267	cgG/cg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530157	212530157	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	36	422	0	ENST00000342788.4:c.1762A>C	p.Asn588His	p.N588H	ENST00000342788	NM_005235.2	588	Aac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	599	613	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061214	38061231	+	inframe_deletion	In_Frame_Del	DEL	AGCAGCCGTTCTCGAACA	AGCAGCCGTTCTCGAACA	-			P-0050401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	209	681	0	ENST00000250448.2:c.758_775del	p.Met253_Tyr259delinsAsn	p.M253_Y259delinsN	ENST00000250448	NM_004496.3	253	aTGTTCGAGAACGGCTGCTac/aac																																																																														
FLCN	201163	MSKCC	GRCh37	17	17120412	17120412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	121	626	0	ENST00000285071.4:c.1147C>G	p.Leu383Val	p.L383V	ENST00000285071	NM_144997.5	383	Ctc/Gtc																																																																														
HGF	3082	MSKCC	GRCh37	7	81372701	81372701	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	120	400	0	ENST00000222390.5:c.833C>G	p.Thr278Ser	p.T278S	ENST00000222390	NM_000601.4	278	aCc/aGc																																																																														
APC	324	MSKCC	GRCh37	5	112175879	112175886	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAATGA	GAAAATGA	T			P-0050401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	77	267	0	ENST00000257430.4:c.4588_4595delinsT	p.Glu1530SerfsTer33	p.E1530Sfs*33	ENST00000257430	NM_000038.5	1530	GAAAATGAc/Tc																																																																														
ATM	472	MSKCC	GRCh37	11	108199824	108199824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	69	367	0	ENST00000278616.4:c.7166C>T	p.Ser2389Leu	p.S2389L	ENST00000278616	NM_000051.3	2389	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421078	49421078	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	136	568	0	ENST00000301067.7:c.14671C>T	p.Gln4891Ter	p.Q4891*	ENST00000301067	NM_003482.3	4891	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443467	49443467	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0050402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	161	612	1	ENST00000301067.7:c.3904C>T	p.Gln1302Ter	p.Q1302*	ENST00000301067	NM_003482.3	1302	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0050402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	176	728	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15378358	15378358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	82	266	0	ENST00000263377.2:c.428G>C	p.Gly143Ala	p.G143A	ENST00000263377	NM_058243.2	143	gGa/gCa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082767	16082767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	41	143	0	ENST00000281043.3:c.581C>T	p.Pro194Leu	p.P194L	ENST00000281043	NM_005378.4	194	cCc/cTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0050402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	209	822	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0050402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	93	398	0				ENST00000310581	NM_198253.2																																																																																
RASA1	5921	MSKCC	GRCh37	5	86676403	86676403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	58	271	0	ENST00000274376.6:c.2681G>C	p.Arg894Thr	p.R894T	ENST00000274376	NM_002890.2	894	aGa/aCa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509517	106509517	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	484	687	0	ENST00000359195.3:c.1511C>G	p.Ser504Cys	p.S504C	ENST00000359195	NM_002649.2	504	tCt/tGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860722	151860722	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	428	546	1	ENST00000262189.6:c.9940C>T	p.Gln3314Ter	p.Q3314*	ENST00000262189	NM_170606.2	3314	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945136	151945136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	12	193	0	ENST00000262189.6:c.2383G>C	p.Asp795His	p.D795H	ENST00000262189	NM_170606.2	795	Gac/Cac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061205	38061205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	32	517	0	ENST00000250448.2:c.784C>T	p.Arg262Cys	p.R262C	ENST00000250448	NM_004496.3	262	Cgc/Tgc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627418	37627419	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0050404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	20	487	0	ENST00000447079.4:c.1336_1337del	p.Lys446ValfsTer15	p.K446Vfs*15	ENST00000447079	NM_015083.1	445	AAa/a																																																																														
CDK12	51755	MSKCC	GRCh37	17	37646846	37646847	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGAAGGAACAGAGGACACGTCACTTACTCACAGACCTTCCTCTCCCTCCAGAGCTCCCTGGTG			P-0050404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	22	362	0	ENST00000447079.4:c.1973_2036dup	p.Asp679GlufsTer42	p.D679Efs*42	ENST00000447079	NM_015083.1	656	-/GAGAAGGAACAGAGGACACGTCACTTACTCACAGACCTTCCTCTCCCTCCAGAGCTCCCTGGTG																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942571	17942571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	41	695	0	ENST00000458235.1:c.2717C>A	p.Pro906His	p.P906H	ENST00000458235	NM_000215.3	906	cCc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	107	279	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	274	559	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	310	582	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
PAK7	0	MSKCC	GRCh37	20	9561396	9561396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	170	380	0	ENST00000353224.5:c.386C>T	p.Ser129Phe	p.S129F	ENST00000353224	NM_177990.2	129	tCc/tTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601310	28601310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	140	315	0	ENST00000241453.7:c.2122G>A	p.Glu708Lys	p.E708K	ENST00000241453	NM_004119.2	708	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508281	106508281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	209	399	0	ENST00000359195.3:c.275G>A	p.Gly92Glu	p.G92E	ENST00000359195	NM_002649.2	92	gGa/gAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	174	416	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																														
BLM	641	MSKCC	GRCh37	15	91312683	91312683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	97	221	2	ENST00000355112.3:c.2422C>T	p.Arg808Cys	p.R808C	ENST00000355112	NM_000057.2	808	Cgt/Tgt																																																																														
WT1	7490	MSKCC	GRCh37	11	32414251	32414251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	150	329	0	ENST00000332351.3:c.1300C>T	p.Arg434Cys	p.R434C	ENST00000332351	NM_024426.4	434	Cgt/Tgt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934002	49934002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	228	610	0	ENST00000296474.3:c.2410C>T	p.His804Tyr	p.H804Y	ENST00000296474	NM_002447.2	804	Cat/Tat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346895	89346895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	164	417	0	ENST00000301030.4:c.6055C>T	p.Pro2019Ser	p.P2019S	ENST00000301030	NM_001256183.1	2019	Ccc/Tcc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909674	50909674	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199700312		P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	288	693	0	ENST00000440232.2:c.1394G>A	p.Arg465Gln	p.R465Q	ENST00000440232	NM_002691.3	465	cGg/cAg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964374	70964374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	174	350	0	ENST00000276594.2:c.1654G>A	p.Gly552Arg	p.G552R	ENST00000276594	NM_024504.3	552	Ggg/Agg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93953241	93953241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	99	322	0	ENST00000369303.4:c.2900G>A	p.Gly967Glu	p.G967E	ENST00000369303	NM_004440.3	967	gGg/gAg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517766	176517766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	218	579	1	ENST00000292408.4:c.376G>A	p.Asp126Asn	p.D126N	ENST00000292408	NM_213647.1	126	Gat/Aat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276875	15276875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	253	602	0	ENST00000263388.2:c.5390C>T	p.Ser1797Phe	p.S1797F	ENST00000263388	NM_000435.2	1797	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715746	18715746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	119	263	0	ENST00000266497.5:c.3577C>T	p.Pro1193Ser	p.P1193S	ENST00000266497		1193	Cct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911247	32911247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	109	392	0	ENST00000380152.3:c.2755G>A	p.Glu919Lys	p.E919K	ENST00000380152		919	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980726	40980726	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	161	288	0	ENST00000373198.4:c.1760C>T	p.Ser587Leu	p.S587L	ENST00000373198	NM_133170.3	587	tCa/tTa																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137525576	137525576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	120	342	0	ENST00000367739.4:c.439C>T	p.His147Tyr	p.H147Y	ENST00000367739	NM_000416.2	147	Cac/Tac																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655271	45655271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56105929		P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	323	613	0	ENST00000407780.3:c.581G>A	p.Arg194Gln	p.R194Q	ENST00000407780	NM_001283052.1	194	cGg/cAg																																																																														
FH	2271	MSKCC	GRCh37	1	241669301	241669301	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	140	281	0	ENST00000366560.3:c.904+2T>C		p.X302_splice	ENST00000366560	NM_000143.3	302																																																																															
RPS6KA4	8986	MSKCC	GRCh37	11	64138917	64138918	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	286	676	0	ENST00000334205.4:c.2284_2285delinsTT	p.Pro762Phe	p.P762F	ENST00000334205	NM_003942.2	762	CCc/TTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372504	118372504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	200	397	0	ENST00000534358.1:c.6437C>T	p.Pro2146Leu	p.P2146L	ENST00000534358	NM_005933.3	2146	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435159	49435160	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	205	507	1	ENST00000301067.7:c.6393_6394delinsTT	p.Pro2132Ser	p.P2132S	ENST00000301067	NM_003482.3	2131	acCCcc/acTTcc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112499	115112499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	307	652	0	ENST00000257566.3:c.1241C>T	p.Ala414Val	p.A414V	ENST00000257566	NM_016569.3	414	gCt/gTt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30095714	30095714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	121	275	0	ENST00000331968.5:c.1774G>A	p.Gly592Arg	p.G592R	ENST00000331968	NM_002742.2	592	Gga/Aga																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643661	38643662	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AA			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	190	454	0	ENST00000299084.4:c.1131_1132delinsAA	p.Tyr377_His378delinsTer	p.Y377_H378delins*	ENST00000299084	NM_152594.2	377	taTCat/taAAat																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170016889	170016889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	145	321	0	ENST00000295797.4:c.1694C>T	p.Pro565Leu	p.P565L	ENST00000295797	NM_002740.5	565	cCa/cTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1294392	1294392	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	278	699	1	ENST00000310581.5:c.609G>A	p.Trp203Ter	p.W203*	ENST00000310581	NM_198253.2	203	tgG/tgA																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665497	176665497	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	160	330	0	ENST00000439151.2:c.4181T>G	p.Val1394Gly	p.V1394G	ENST00000439151	NM_022455.4	1394	gTt/gGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665505	176665505	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	148	320	0	ENST00000439151.2:c.4189C>G	p.Pro1397Ala	p.P1397A	ENST00000439151	NM_022455.4	1397	Cca/Gca																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120390	94120390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	16	254	0	ENST00000369303.4:c.661G>A	p.Gly221Ser	p.G221S	ENST00000369303	NM_004440.3	221	Ggt/Agt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55219048	55219048	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	199	388	0	ENST00000275493.2:c.621C>G	p.Cys207Trp	p.C207W	ENST00000275493	NM_005228.3	207	tgC/tgG																																																																														
TEK	7010	MSKCC	GRCh37	9	27180252	27180252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	205	370	0	ENST00000380036.4:c.916T>C	p.Phe306Leu	p.F306L	ENST00000380036	NM_000459.3	306	Ttt/Ctt																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321387	1321387	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	142	331	0	ENST00000381566.1:c.368del	p.Lys123SerfsTer3	p.K123Sfs*3	ENST00000381566		123	aAg/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	224	568	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914815	32914815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	30	349	0	ENST00000380152.3:c.6323G>A	p.Arg2108His	p.R2108H	ENST00000380152		2108	cGt/cAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18496273	18496273	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0050410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	13	183	0	ENST00000266497.5:c.1408A>T	p.Ser470Cys	p.S470C	ENST00000266497		470	Agt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058588	69058588	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0050410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	20	413	0	ENST00000288368.4:c.4231+1G>C		p.X1411_splice	ENST00000288368	NM_024870.2	1411																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412646	63412646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	32	540	0	ENST00000330258.3:c.521G>A	p.Ser174Asn	p.S174N	ENST00000330258	NM_152424.3	174	aGc/aAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37667835	37667835	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	110	447	0	ENST00000447079.4:c.2720T>C	p.Leu907Pro	p.L907P	ENST00000447079	NM_015083.1	907	cTg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0050419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	76	507	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0050419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	93	294	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	259	483	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0050419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	190	490	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
BRAF	673	MSKCC	GRCh37	7	140481412	140481412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	86	246	0	ENST00000288602.6:c.1396G>C	p.Gly466Arg	p.G466R	ENST00000288602	NM_004333.4	466	Gga/Cga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821821	72821821	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0050419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	217	410	0	ENST00000268489.5:c.10354del	p.Leu3452SerfsTer33	p.L3452Sfs*33	ENST00000268489	NM_006885.3	3452	Ctc/tc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074093	8074094	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	62	266	0	ENST00000377482.5:c.565dup	p.Ser189PhefsTer2	p.S189Ffs*2	ENST00000377482	NM_018948.3	189	tct/tTct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	58	315	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	111	561	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604764	48604765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0050420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	54	336	0	ENST00000342988.3:c.1587dup	p.His530ThrfsTer47	p.H530Tfs*47	ENST00000342988	NM_005359.5	529	tta/ttAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257158	16257158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	38	377	0	ENST00000375759.3:c.4423C>T	p.Arg1475Ter	p.R1475*	ENST00000375759	NM_015001.2	1475	Cga/Tga																																																																														
CCND3	896	MSKCC	GRCh37	6	41909291	41909291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	121	590	0	ENST00000372991.4:c.97C>T	p.Arg33Cys	p.R33C	ENST00000372991	NM_001760.3	33	Cgc/Tgc																																																																														
AXL	558	MSKCC	GRCh37	19	41726595	41726595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	123	612	1	ENST00000301178.4:c.140C>T	p.Ala47Val	p.A47V	ENST00000301178	NM_021913.4	47	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	135	400	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0050424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	225	484	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0050424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	44	175	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713506	30713506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	191	474	0	ENST00000359013.4:c.906G>C	p.Lys302Asn	p.K302N	ENST00000359013	NM_001024847.2	302	aaG/aaC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717699	89717699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0050424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	134	372	0	ENST00000371953.3:c.724G>T	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	242	Gag/Tag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098803	178098803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	179	570	0	ENST00000397062.3:c.242G>C	p.Gly81Ala	p.G81A	ENST00000397062	NM_006164.4	81	gGt/gCt																																																																														
MPL	4352	MSKCC	GRCh37	1	43818417	43818417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	161	471	0	ENST00000372470.3:c.1882C>T	p.Pro628Ser	p.P628S	ENST00000372470	NM_005373.2	628	Cca/Tca																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860087	57860087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	132	575	1	ENST00000228682.2:c.827C>T	p.Ser276Phe	p.S276F	ENST00000228682	NM_005269.2	276	tCc/tTc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461579	138461579	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	144	390	0	ENST00000289153.2:c.442T>C	p.Phe148Leu	p.F148L	ENST00000289153	NM_006219.2	148	Ttt/Ctt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589024	67589028	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TAAGG	TAAGG	-			P-0050424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	63	229	0	ENST00000274335.5:c.1118+1_1118+5del		p.X373_splice	ENST00000274335		373																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589597	67589647	+	inframe_deletion	In_Frame_Del	DEL	ACTCAGTTTCAAGAAAAAAGTCGAGAATATGATAGATTATATGAAGAATAT	ACTCAGTTTCAAGAAAAAAGTCGAGAATATGATAGATTATATGAAGAATAT	-			P-0050424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	35	254	0	ENST00000274335.5:c.1362_1412del	p.Gln455_Thr471del	p.Q455_T471del	ENST00000274335		454	ACTCAGTTTCAAGAAAAAAGTCGAGAATATGATAGATTATATGAAGAATAT/-																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641059	117641059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	147	420	0	ENST00000368508.3:c.5912G>C	p.Gly1971Ala	p.G1971A	ENST00000368508	NM_002944.2	1971	gGa/gCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	18	396	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	24	585	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138191	64138191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	27	567	0	ENST00000334205.4:c.2114C>A	p.Thr705Asn	p.T705N	ENST00000334205	NM_003942.2	705	aCc/aAc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877344	28877344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	147	379	0	ENST00000282397.4:c.3977A>G	p.Asp1326Gly	p.D1326G	ENST00000282397	NM_002019.4	1326	gAc/gGc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794793	242794793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	144	353	0	ENST00000334409.5:c.416G>A	p.Arg139Gln	p.R139Q	ENST00000334409	NM_005018.2	139	cGg/cAg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799940	72799940	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	73	360	0	ENST00000325599.8:c.1229T>G	p.Leu410Arg	p.L410R	ENST00000325599	NM_018130.2	410	cTt/cGt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131925370	131925370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	58	183	0	ENST00000265335.6:c.1293G>T	p.Glu431Asp	p.E431D	ENST00000265335		431	gaG/gaT																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538910	23538910	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	24	455	0	ENST00000380871.4:c.529T>C	p.Tyr177His	p.Y177H	ENST00000380871	NM_006167.3	177	Tat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0050428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	15	474	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	18	424	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0050428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	17	443	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	55	222	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	115	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	37	345	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577555	7577555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	206	491	0	ENST00000269305.4:c.726C>G	p.Cys242Trp	p.C242W	ENST00000269305	NM_001126112.2	242	tgC/tgG																																																																														
APC	324	MSKCC	GRCh37	5	112116517	112116517	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	25	308	0	ENST00000257430.4:c.562C>T	p.Gln188Ter	p.Q188*	ENST00000257430	NM_000038.5	188	Caa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219008	36219008	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	149	495	0	ENST00000222270.7:c.4507T>G	p.Ser1503Ala	p.S1503A	ENST00000222270	NM_014727.1	1503	Tct/Gct																																																																														
BCL6	604	MSKCC	GRCh37	3	187447463	187447463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	226	498	0	ENST00000232014.4:c.730C>T	p.Arg244Trp	p.R244W	ENST00000232014	NM_001130845.1	244	Cgg/Tgg																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749464	41749464	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0050429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	124	444	0	ENST00000226382.2:c.331A>C	p.Lys111Gln	p.K111Q	ENST00000226382	NM_003924.3	111	Aaa/Caa																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0050431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	176	461	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471047	8471047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201751722		P-0050431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	238	374	0	ENST00000356435.5:c.3452G>A	p.Arg1151His	p.R1151H	ENST00000356435		1151	cGc/cAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508682	106508682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	415	542	1	ENST00000359195.3:c.676C>T	p.Arg226Cys	p.R226C	ENST00000359195	NM_002649.2	226	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376665	8376665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	150	501	0	ENST00000356435.5:c.4448C>T	p.Thr1483Met	p.T1483M	ENST00000356435		1483	aCg/aTg																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137522066	137522066	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	103	329	0	ENST00000367739.4:c.813G>C	p.Lys271Asn	p.K271N	ENST00000367739	NM_000416.2	271	aaG/aaC																																																																														
TERT	7015	MSKCC	GRCh37	5	1293846	1293847	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0050431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	155	717	2	ENST00000310581.5:c.1154_1155delinsAA	p.Arg385Gln	p.R385Q	ENST00000310581	NM_198253.2	385	cGC/cAA																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137522061	137522062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0050431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	88	334	0	ENST00000367739.4:c.817dup	p.Ile273AsnfsTer2	p.I273Nfs*2	ENST00000367739	NM_000416.2	273	att/aAtt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395188	139395200	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGGTAGATGA	CCCTGGTAGATGA	-			P-0050431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	201	648	0	ENST00000277541.6:c.5738_5750del	p.Phe1913SerfsTer64	p.F1913Sfs*64	ENST00000277541	NM_017617.3	1913	tTCATCTACCAGGGc/tc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	35	510	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	79	455	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0050433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	205	694	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0050434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	87	402	0	ENST00000250448.2:c.754_774delAACATGTTCGAGAACGGCTGC	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38148105	38148105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0050434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	195	502	0	ENST00000317025.8:c.3006C>A	p.Phe1002Leu	p.F1002L	ENST00000317025	NM_023034.1	1002	ttC/ttA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	206	355	0				ENST00000310581	NM_198253.2																																																																																
TSC1	7248	MSKCC	GRCh37	9	135781386	135781386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	331	533	1	ENST00000298552.3:c.1579C>T	p.Gln527Ter	p.Q527*	ENST00000298552	NM_001162426.1	527	Cag/Tag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	341	581	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031919	26031919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	109	333	0	ENST00000244661.2:c.370G>C	p.Asp124His	p.D124H	ENST00000244661	NM_003537.3	124	Gac/Cac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	427	342	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45871992	45871992	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	228	534	0	ENST00000391945.4:c.256G>C	p.Glu86Gln	p.E86Q	ENST00000391945	NM_000400.3	86	Gag/Cag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864656	37864656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	379	575	1	ENST00000269571.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000269571		103	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	314	482	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41545177	41545177	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	304	470	0	ENST00000263253.7:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000263253	NM_001429.3	793	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446415	49446415	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	348	560	0	ENST00000301067.7:c.1190del	p.Lys397ArgfsTer5	p.K397Rfs*5	ENST00000301067	NM_003482.3	397	aAg/ag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018160	48018160	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	366	566	0	ENST00000234420.5:c.355T>C	p.Phe119Leu	p.F119L	ENST00000234420	NM_000179.2	119	Ttc/Ctc																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309691	30309691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	98	576	0	ENST00000307677.4:c.331C>G	p.Gln111Glu	p.Q111E	ENST00000307677	NM_138578.1	111	Cag/Gag																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458209	12458209	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	215	432	0	ENST00000287820.6:c.826G>C	p.Val276Leu	p.V276L	ENST00000287820	NM_015869.4	276	Gtt/Ctt																																																																														
KIT	3815	MSKCC	GRCh37	4	55598157	55598157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	43	316	0	ENST00000288135.5:c.2354C>A	p.Ser785Tyr	p.S785Y	ENST00000288135	NM_000222.2	785	tCc/tAc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911478	131911478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	240	342	0	ENST00000265335.6:c.223G>A	p.Glu75Lys	p.E75K	ENST00000265335		75	Gaa/Aaa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911567	131911567	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	264	423	0	ENST00000265335.6:c.312G>C	p.Gln104His	p.Q104H	ENST00000265335		104	caG/caC																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324070	31324089	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCCGCCGTGTCCGCGGCG	GAGCCGCCGTGTCCGCGGCG	-			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	239	439	0	ENST00000412585.2:c.474_493del	p.Ala159AspfsTer11	p.A159Dfs*11	ENST00000412585	NM_005514.6	158	acCGCCGCGGACACGGCGGCTCag/acag																																																																														
ATRX	546	MSKCC	GRCh37	X	76813067	76813067	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0050435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	156	590	0	ENST00000373344.5:c.6554T>C	p.Leu2185Pro	p.L2185P	ENST00000373344	NM_000489.3	2185	cTg/cCg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522624	176522624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0050445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	159	627	0	ENST00000292408.4:c.1721C>T	p.Pro574Leu	p.P574L	ENST00000292408	NM_213647.1	574	cCc/cTc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061102	38061103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0050445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	66	339	0	ENST00000250448.2:c.886dup	p.Asp296GlyfsTer7	p.D296Gfs*7	ENST00000250448	NM_004496.3	296	gac/gGac																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43785234	43785234	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0050445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	119	536	0	ENST00000382044.4:c.7+1G>C		p.X3_splice	ENST00000382044	NM_001141980.1	3																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	34	456	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	36	607	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097814	27097814	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	14	262	0	ENST00000324856.7:c.3404del	p.Pro1135LeufsTer26	p.P1135Lfs*26	ENST00000324856	NM_006015.4	1135	Cct/ct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439935	56439960	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGCACCGAAGCCAGGATGATCA	GCGCAGCACCGAAGCCAGGATGATCA	TCG			P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	55	617	3	ENST00000407977.2:c.632_657delinsCGA	p.Val211AlafsTer40	p.V211Afs*40	ENST00000407977		211	gTGATCATCCTGGCTTCGGTGCTGCGC/gCGA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120851	94120851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	40	433	0	ENST00000369303.4:c.200C>T	p.Pro67Leu	p.P67L	ENST00000369303	NM_004440.3	67	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971167	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGCAGCTCCGCCACTCG	AGCAGCAGCTCCGCCACTCG	CGCAGCC			P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	26	359	2	ENST00000304494.5:c.172_191delinsGGCTGCG	p.Arg58GlyfsTer84	p.R58Gfs*84	ENST00000304494	NM_000077.4	58	CGAGTGGCGGAGCTGCTGCTg/GGCTGCGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971167	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGCAGCTCCGCCACTCG	AGCAGCAGCTCCGCCACTCG	CGCAGCC			P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	26	359	2	ENST00000304494.5:c.172_191delinsGGCTGCG	p.Arg58GlyfsTer84	p.R58Gfs*84	ENST00000304494	NM_000077.4	58	CGAGTGGCGGAGCTGCTGCTg/GGCTGCGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971167	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGCAGCTCCGCCACTCG	AGCAGCAGCTCCGCCACTCG	CGCAGCC			P-0025689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	26	359	2	ENST00000304494.5:c.172_191delinsGGCTGCG	p.Arg58GlyfsTer84	p.R58Gfs*84	ENST00000304494	NM_000077.4	58	CGAGTGGCGGAGCTGCTGCTg/GGCTGCGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	60	613	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	65	537	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27058090	27058104	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCGCAGGTAAGATAT	CCGCAGGTAAGATAT	-			P-0028255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	35	356	0	ENST00000324856.7:c.1800_1803+11del		p.X600_splice	ENST00000324856	NM_006015.4	600																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247338	153247338	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	49	338	0	ENST00000281708.4:c.1464del	p.Ile488MetfsTer10	p.I488Mfs*10	ENST00000281708	NM_033632.3	488	atT/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	76	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46726951	46726951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	69	394	0	ENST00000371975.4:c.785G>A	p.Arg262His	p.R262H	ENST00000371975	NM_003579.3	262	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	138	715	0	ENST00000269305.4:c.321del	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/ta																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492920	56492920	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	48	222	0	ENST00000407977.2:c.19del	p.Leu7CysfsTer11	p.L7Cfs*11	ENST00000407977		7	Ctg/tg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033244-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			476	89	626	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			624	130	372	2	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106355	27106355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	223	299	0	ENST00000324856.7:c.5966G>A	p.Arg1989Gln	p.R1989Q	ENST00000324856	NM_006015.4	1989	cGa/cAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	124	353	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577501	7577501	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	225	305	0	ENST00000269305.4:c.780del	p.Ser261ValfsTer84	p.S261Vfs*84	ENST00000269305	NM_001126112.2	260	tcC/tc																																																																														
TET1	80312	MSKCC	GRCh37	10	70446321	70446321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	99	455	0	ENST00000373644.4:c.5261C>T	p.Ser1754Phe	p.S1754F	ENST00000373644	NM_030625.2	1754	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	178	469	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	178	469	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	178	469	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715789	18715789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			189	59	284	0	ENST00000266497.5:c.3620G>C	p.Arg1207Thr	p.R1207T	ENST00000266497		1207	aGa/aCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415906	49415906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	149	276	0	ENST00000301067.7:c.16441T>C	p.Cys5481Arg	p.C5481R	ENST00000301067	NM_003482.3	5481	Tgt/Cgt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56809865	56809865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	52	350	0	ENST00000337432.4:c.986C>T	p.Ser329Leu	p.S329L	ENST00000337432	NM_058216.2	329	tCa/tTa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80537128	80537129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	128	654	0	ENST00000286548.4:c.269dup	p.Met90IlefsTer15	p.M90Ifs*15	ENST00000286548	NM_002072.3	90	atg/atTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146978	38146980	+	missense_variant	Missense_Mutation	ONP	CTT	CTT	GTA			P-0047477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			751	236	488	0	ENST00000317025.8:c.3162_3164delinsTAC	p.Gln1054_Arg1055delinsHisThr	p.Q1054_R1055delinsHT	ENST00000317025	NM_023034.1	1054	caAAGa/caTACa																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048148-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	37	505	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																														
SRC	6714	MSKCC	GRCh37	20	36014578	36014578	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048148-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	30	410	2	ENST00000358208.4:c.350+1G>A		p.X117_splice	ENST00000358208		117																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70971074	70971074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048148-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	23	399	0	ENST00000276594.2:c.1187C>A	p.Ser396Tyr	p.S396Y	ENST00000276594	NM_024504.3	396	tCt/tAt																																																																														
VHL	7428	MSKCC	GRCh37	3	10188196	10188196	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0049673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	125	410	1	ENST00000256474.2:c.341-2A>T		p.X114_splice	ENST00000256474	NM_000551.3	114																																																																															
BRCA2	675	MSKCC	GRCh37	13	32929179	32929179	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	98	405	0	ENST00000380152.3:c.7189A>G	p.Ile2397Val	p.I2397V	ENST00000380152		2397	Att/Gtt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098957	47098957	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	124	447	0	ENST00000409792.3:c.6317del	p.Lys2106ArgfsTer41	p.K2106Rfs*41	ENST00000409792	NM_014159.6	2106	aAg/ag																																																																														
ATR	545	MSKCC	GRCh37	3	142222223	142222223	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	84	348	0	ENST00000350721.4:c.5269A>T	p.Asn1757Tyr	p.N1757Y	ENST00000350721	NM_001184.3	1757	Aat/Tat																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38156976	38156976	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	66	415	0	ENST00000317025.8:c.2744A>C	p.Lys915Thr	p.K915T	ENST00000317025	NM_023034.1	915	aAg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0049675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	259	749	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78414967	78414967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	44	365	0	ENST00000370768.2:c.1799C>T	p.Pro600Leu	p.P600L	ENST00000370768	NM_003902.3	600	cCg/cTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459122	120459122	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150516342		P-0049675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	67	683	1	ENST00000256646.2:c.6223G>A	p.Val2075Met	p.V2075M	ENST00000256646	NM_024408.3	2075	Gtg/Atg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893415	32893415	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	109	320	0	ENST00000380152.3:c.269T>G	p.Leu90Arg	p.L90R	ENST00000380152		90	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577522	7577522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	54	621	0	ENST00000269305.4:c.759del	p.Ile254SerfsTer91	p.I254Sfs*91	ENST00000269305	NM_001126112.2	253	acC/ac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911672	32911672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	45	315	0	ENST00000380152.3:c.3180C>A	p.Ser1060Arg	p.S1060R	ENST00000380152		1060	agC/agA																																																																														
BBC3	27113	MSKCC	GRCh37	19	47731448	47731448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	14	137	1	ENST00000449228.1:c.344C>T	p.Ser115Phe	p.S115F	ENST00000449228	NM_001127240.2	115	tCc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0049849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	25	264	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	25	298	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	22	239	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																														
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	19	350	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81990400	81990400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	27	417	0	ENST00000359376.3:c.3671G>A	p.Arg1224His	p.R1224H	ENST00000359376	NM_002661.3	1224	cGc/cAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554681	63554681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	44	502	0	ENST00000307078.5:c.58G>T	p.Asp20Tyr	p.D20Y	ENST00000307078	NM_004655.3	20	Gat/Tat																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437568	110437568	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	58	608	0	ENST00000375856.3:c.833T>C	p.Val278Ala	p.V278A	ENST00000375856	NM_003749.2	278	gTg/gCg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012245	152012245	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	22	366	0	ENST00000262189.6:c.568C>T	p.Arg190Ter	p.R190*	ENST00000262189	NM_170606.2	190	Cga/Tga																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326165	62326165	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	51	846	0	ENST00000508582.2:c.3253A>C	p.Ser1085Arg	p.S1085R	ENST00000508582		1085	Agc/Cgc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222757	53222758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	154	346	0	ENST00000375401.3:c.4178dup	p.Ala1394GlyfsTer22	p.A1394Gfs*22	ENST00000375401	NM_004187.3	1393	gag/gaAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47147543	47147543	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	224	296	0	ENST00000409792.3:c.4783G>T	p.Glu1595Ter	p.E1595*	ENST00000409792	NM_014159.6	1595	Gag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442489	52442489	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0049861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	251	314	0	ENST00000460680.1:c.255+1G>A		p.X85_splice	ENST00000460680	NM_004656.3	85																																																																															
TP53	7157	MSKCC	GRCh37	17	7578523	7578523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	42	712	0	ENST00000269305.4:c.407A>C	p.Gln136Pro	p.Q136P	ENST00000269305	NM_001126112.2	136	cAa/cCa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959420	26959420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	27	355	0	ENST00000381527.3:c.587C>A	p.Thr196Lys	p.T196K	ENST00000381527	NM_001260.1	196	aCa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	89	258	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	42	240	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	150	480	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182032	38182032	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	71	401	0	ENST00000396334.3:c.656C>G	p.Ser219Cys	p.S219C	ENST00000396334	NM_002468.4	219	tCt/tGt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121909	2121909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	196	872	0	ENST00000219476.3:c.2071C>T	p.Arg691Cys	p.R691C	ENST00000219476	NM_000548.3	691	Cgc/Tgc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942703	44942703	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0049866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	86	275	0	ENST00000377967.4:c.3285-2A>T		p.X1095_splice	ENST00000377967	NM_021140.2	1095																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982157	201982157	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	150	581	0	ENST00000359651.3:c.684del	p.Ser229AlafsTer25	p.S229Afs*25	ENST00000359651		227	ttC/tt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524812	187524812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184690159		P-0049866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	204	496	1	ENST00000441802.2:c.10868C>T	p.Thr3623Met	p.T3623M	ENST00000441802	NM_005245.3	3623	aCg/aTg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981085	201981086	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0049866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	105	420	0	ENST00000359651.3:c.165_166insGG	p.Lys56GlyfsTer100	p.K56Gfs*100	ENST00000359651		55	gag/gaGGg																																																																														
EP300	2033	MSKCC	GRCh37	22	41545842	41545842	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0049866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	137	474	0	ENST00000263253.7:c.2457T>A	p.Cys819Ter	p.C819*	ENST00000263253	NM_001429.3	819	tgT/tgA																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286922	33286922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	187	621	0	ENST00000374542.5:c.2015C>T	p.Pro672Leu	p.P672L	ENST00000374542	NM_001141970.1	672	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427687	49427687	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	12	532	0	ENST00000301067.7:c.10801C>T	p.Gln3601Ter	p.Q3601*	ENST00000301067	NM_003482.3	3601	Caa/Taa																																																																														
EP300	2033	MSKCC	GRCh37	22	41572371	41572371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	17	551	0	ENST00000263253.7:c.4900G>C	p.Ala1634Pro	p.A1634P	ENST00000263253	NM_001429.3	1634	Gca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0049870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	45	604	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100436	8100436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	36	819	1	ENST00000346208.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000346208		137	tCg/tTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928929	44928929	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	22	184	0	ENST00000377967.4:c.2029C>T	p.Gln677Ter	p.Q677*	ENST00000377967	NM_021140.2	677	Cag/Tag																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740498	58740498	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0049870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	32	401	0	ENST00000305921.3:c.1403C>G	p.Ser468Ter	p.S468*	ENST00000305921	NM_003620.3	468	tCa/tGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0049870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	18	328	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27059213	27059213	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	35	387	0	ENST00000324856.7:c.1850C>A	p.Ser617Ter	p.S617*	ENST00000324856	NM_006015.4	617	tCa/tAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828936	72828936	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	19	558	0	ENST00000268489.5:c.7645C>T	p.Gln2549Ter	p.Q2549*	ENST00000268489	NM_006885.3	2549	Cag/Tag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224744	123224744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	13	172	0	ENST00000218089.9:c.3508G>A	p.Glu1170Lys	p.E1170K	ENST00000218089	NM_001042749.1	1170	Gaa/Aaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224751	123224751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	17	176	0	ENST00000218089.9:c.3515G>T	p.Arg1172Met	p.R1172M	ENST00000218089	NM_001042749.1	1172	aGg/aTg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	18	427	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730011	41730011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	22	579	0	ENST00000242208.4:c.518T>C	p.Ile173Thr	p.I173T	ENST00000242208	NM_002192.2	173	aTc/aCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	74	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	271	927	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0049874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	142	764	0	ENST00000304494.5:c.132C>G	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0049874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	142	764	0	ENST00000304494.5:c.132C>G	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taG																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034417	47034417	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	148	1011	0	ENST00000329236.7:c.272-1G>A		p.X91_splice	ENST00000329236	NM_001204466.1	91																																																																															
TOP1	7150	MSKCC	GRCh37	20	39728724	39728724	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	44	299	0	ENST00000361337.2:c.1004T>G	p.Leu335Arg	p.L335R	ENST00000361337	NM_003286.2	335	cTg/cGg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936075	49936076	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	134	1372	0	ENST00000296474.3:c.1594dup	p.Thr532AsnfsTer39	p.T532Nfs*39	ENST00000296474	NM_002447.2	532	acc/aAcc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870988	12870988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	152	439	0	ENST00000228872.4:c.215G>T	p.Gly72Val	p.G72V	ENST00000228872	NM_004064.3	72	gGc/gTc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871758	12871758	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	65	160	0	ENST00000228872.4:c.476-1G>C		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																															
ARID2	196528	MSKCC	GRCh37	12	46125006	46125006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	28	250	0	ENST00000334344.6:c.193G>A	p.Glu65Lys	p.E65K	ENST00000334344	NM_152641.2	65	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	48934164	48934164	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1	25	326	0	ENST00000267163.4:c.619C>T	p.Gln207Ter	p.Q207*	ENST00000267163	NM_000321.2	207	Caa/Taa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647697	3647697	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	124	708	0	ENST00000294008.3:c.1367-1G>C		p.X456_splice	ENST00000294008	NM_032444.2	456																																																																															
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	138	751	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872213	45872213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	365	785	0	ENST00000391945.4:c.221C>T	p.Ser74Leu	p.S74L	ENST00000391945	NM_000400.3	74	tCa/tTa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206728	36206728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	211	673	0	ENST00000300305.3:c.784C>T	p.Gln262Ter	p.Q262*	ENST00000300305		262	Cag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52582198	52582198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	174	404	0	ENST00000394830.3:c.4630C>T	p.His1544Tyr	p.H1544Y	ENST00000394830	NM_018313.4	1544	Cac/Tac																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73047300	73047302	+	missense_variant	Missense_Mutation	ONP	GAG	GAG	AAA			P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	100	508	0	ENST00000356692.5:c.107_109delinsAAA	p.Gly36_Glu37delinsGluLys	p.G36_E37delinsEK	ENST00000356692		36	gGAGaa/gAAAaa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149375069	149375069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	374	932	0	ENST00000360632.3:c.25C>T	p.Pro9Ser	p.P9S	ENST00000360632	NM_015472.4	9	Ccg/Tcg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	412	378	0				ENST00000310581	NM_198253.2																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101908786	101908786	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	24	343	0	ENST00000374994.4:c.1150C>G	p.Leu384Val	p.L384V	ENST00000374994	NM_004612.2	384	Ctc/Gtc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039325	47039325	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	520	427	0	ENST00000329236.7:c.718del	p.Leu240TrpfsTer18	p.L240Wfs*18	ENST00000329236	NM_001204466.1	239	atC/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	206	328	0				ENST00000310581	NM_198253.2																																																																																
KDR	3791	MSKCC	GRCh37	4	55981086	55981086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	272	447	0	ENST00000263923.4:c.613A>G	p.Asn205Asp	p.N205D	ENST00000263923	NM_002253.2	205	Aat/Gat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845679	151845679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	366	554	1	ENST00000262189.6:c.13333G>A	p.Gly4445Ser	p.G4445S	ENST00000262189	NM_170606.2	4445	Ggt/Agt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30133065	30133065	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	116	322	0	ENST00000331968.5:c.536G>A	p.Gly179Glu	p.G179E	ENST00000331968	NM_002742.2	179	gGg/gAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11288730	11288730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	336	475	0	ENST00000361445.4:c.3025C>T	p.Arg1009Trp	p.R1009W	ENST00000361445	NM_004958.3	1009	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107090	27107093	+	frameshift_variant	Frame_Shift_Del	DEL	CTGC	CTGC	-			P-0049878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	170	514	0	ENST00000324856.7:c.6702_6705del	p.Ala2237CysfsTer29	p.A2237Cfs*29	ENST00000324856	NM_006015.4	2234	gCTGCc/gc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63699990	63699990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	100	277	0	ENST00000279873.7:c.325C>G	p.Leu109Val	p.L109V	ENST00000279873	NM_032199.2	109	Ctg/Gtg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929007	32929007	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	274	380	0	ENST00000380152.3:c.7018del	p.Glu2340AsnfsTer27	p.E2340Nfs*27	ENST00000380152		2339	aaG/aa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396591	396591	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0049878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	422	690	0	ENST00000262320.3:c.435C>G	p.Tyr145Ter	p.Y145*	ENST00000262320	NM_003502.3	145	taC/taG																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881311	37881311	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	459	731	0	ENST00000269571.5:c.2503T>C	p.Tyr835His	p.Y835H	ENST00000269571		835	Tac/Cac																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138376607	138376607	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	295	438	0	ENST00000289153.2:c.2867del	p.Val956GlyfsTer36	p.V956Gfs*36	ENST00000289153	NM_006219.2	956	gTg/gg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268688	98268704	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTTCCACCCACAGCTC	CCTTCCACCCACAGCTC	-			P-0049878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	201	357	0	ENST00000331920.6:c.379_394+1del		p.X127_splice	ENST00000331920	NM_000264.3	127																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023845	27023864	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCGGGCCCCAGGACGGGG	TGGCGGGCCCCAGGACGGGG	CGT			P-0049878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	113	383	2	ENST00000324856.7:c.951_970delinsCGT	p.Gly318ValfsTer76	p.G318Vfs*76	ENST00000324856	NM_006015.4	317	agTGGCGGGCCCCAGGACGGGGgc/agCGTgc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	154	604	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	28	458	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	68	662	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970912	21971408	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCGCGGCATCTATGCGGGCATGGTTACTGCCTCTGGTGCCCCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGGCCCAGCTCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCC	TCCGCGGCATCTATGCGGGCATGGTTACTGCCTCTGGTGCCCCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGGCCCAGCTCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCC	-			P-0029281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	61	736	0	ENST00000304494.5:c.151-201_446del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970912	21971408	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCGCGGCATCTATGCGGGCATGGTTACTGCCTCTGGTGCCCCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGGCCCAGCTCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCC	TCCGCGGCATCTATGCGGGCATGGTTACTGCCTCTGGTGCCCCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGGCCCAGCTCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCC	-			P-0029281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	61	736	0	ENST00000304494.5:c.151-201_446del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970912	21971408	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCGCGGCATCTATGCGGGCATGGTTACTGCCTCTGGTGCCCCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGGCCCAGCTCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCC	TCCGCGGCATCTATGCGGGCATGGTTACTGCCTCTGGTGCCCCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGGCCCAGCTCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCC	-			P-0029281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	61	736	0	ENST00000304494.5:c.151-201_446del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			157	523	947	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221322	1221322	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			147	485	758	0	ENST00000326873.7:c.845T>G	p.Leu282Arg	p.L282R	ENST00000326873	NM_000455.4	282	cTc/cGc																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494637	2494637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			117	401	844	1	ENST00000355716.4:c.777G>T	p.Gln259His	p.Q259H	ENST00000355716	NM_003820.2	259	caG/caT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431922	49431922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			481	536	813	2	ENST00000301067.7:c.9217G>A	p.Val3073Ile	p.V3073I	ENST00000301067	NM_003482.3	3073	Gta/Ata																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112464	115112464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			216	620	788	1	ENST00000257566.3:c.1276G>T	p.Gly426Trp	p.G426W	ENST00000257566	NM_016569.3	426	Ggg/Tgg																																																																														
SDHA	6389	MSKCC	GRCh37	5	251135	251135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			150	130	222	0	ENST00000264932.6:c.1580G>T	p.Arg527Leu	p.R527L	ENST00000264932	NM_004168.2	527	cGt/cTt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141568600	141568600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			613	233	722	1	ENST00000220592.5:c.862C>T	p.Pro288Ser	p.P288S	ENST00000220592	NM_012154.3	288	Ccc/Tcc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435625	18435625	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			927	64	225	0	ENST00000266497.5:c.610T>A	p.Ser204Thr	p.S204T	ENST00000266497		204	Tct/Act																																																																														
FLT1	2321	MSKCC	GRCh37	13	28901669	28901669	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			275	90	348	0	ENST00000282397.4:c.2726T>A	p.Val909Asp	p.V909D	ENST00000282397	NM_002019.4	909	gTt/gAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198270181	198270181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			152	107	278	1	ENST00000335508.6:c.1255G>T	p.Ala419Ser	p.A419S	ENST00000335508	NM_012433.2	419	Gct/Tct																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138624	55138624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			285	170	490	0	ENST00000257290.5:c.1301G>T	p.Arg434Met	p.R434M	ENST00000257290	NM_006206.4	434	aGg/aTg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131973882	131973883	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0035340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			184	96	305	0	ENST00000265335.6:c.3585_3586delinsCT	p.Leu1195_Asp1196delinsPheTyr	p.L1195_D1196delinsFY	ENST00000265335		1195	ttGGat/ttCTat																																																																														
BRAF	673	MSKCC	GRCh37	7	140534566	140534566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			309	117	347	0	ENST00000288602.6:c.347C>T	p.Ser116Leu	p.S116L	ENST00000288602	NM_004333.4	116	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	184	470	0	ENST00000269305.4:c.721T>G	p.Ser241Ala	p.S241A	ENST00000269305	NM_001126112.2	241	Tcc/Gcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	114	275	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	54	356	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	221	454	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435798	110435798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	137	357	0	ENST00000375856.3:c.2603C>T	p.Ser868Leu	p.S868L	ENST00000375856	NM_003749.2	868	tCg/tTg																																																																														
RAD51	5888	MSKCC	GRCh37	15	41021830	41021830	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	64	406	0	ENST00000267868.3:c.772G>A	p.Glu258Lys	p.E258K	ENST00000267868	NM_002875.4	258	Gag/Aag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675622	86675622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			145	66	175	0	ENST00000274376.6:c.2558C>T	p.Ser853Leu	p.S853L	ENST00000274376	NM_002890.2	853	tCa/tTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			832	231	464	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231415	5231415	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	163	676	0	ENST00000357368.4:c.2061G>C	p.Glu687Asp	p.E687D	ENST00000357368	NM_002850.3	687	gaG/gaC																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873648	35873648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	186	256	0	ENST00000303115.3:c.604G>A	p.Glu202Lys	p.E202K	ENST00000303115	NM_002185.3	202	Gag/Aag																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422086	81422086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	110	473	0	ENST00000298171.2:c.62G>A	p.Gly21Glu	p.G21E	ENST00000298171	NM_000369.2	21	gGa/gAa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877476	89877476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	103	477	0	ENST00000389301.3:c.287C>T	p.Ser96Phe	p.S96F	ENST00000389301	NM_000135.2	96	tCt/tTt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090508	5090508	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			148	25	193	0	ENST00000381652.3:c.2824C>T	p.Gln942Ter	p.Q942*	ENST00000381652	NM_004972.3	942	Caa/Taa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250274	110250274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	260	747	0	ENST00000374672.4:c.401C>T	p.Ser134Leu	p.S134L	ENST00000374672	NM_004235.4	134	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100919	27100919	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	112	537	0	ENST00000324856.7:c.4201C>T	p.Gln1401Ter	p.Q1401*	ENST00000324856	NM_006015.4	1401	Cag/Tag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976373	18976373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			709	240	744	1	ENST00000262803.5:c.3023G>A	p.Arg1008Gln	p.R1008Q	ENST00000262803	NM_002911.3	1008	cGa/cAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163282	32163282	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			882	1419	827	0	ENST00000375023.3:c.5944C>T	p.Gln1982Ter	p.Q1982*	ENST00000375023	NM_004557.3	1982	Caa/Taa																																																																														
CASP8	841	MSKCC	GRCh37	2	202150013	202150013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	103	460	0	ENST00000358485.4:c.1454G>A	p.Cys485Tyr	p.C485Y	ENST00000358485	NM_001080125.1	485	tGc/tAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913836	32913836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	30	277	0	ENST00000380152.3:c.5344C>T	p.Gln1782Ter	p.Q1782*	ENST00000380152		1782	Caa/Taa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473705	67473705	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	176	534	1	ENST00000327367.4:c.785A>G	p.Asp262Gly	p.D262G	ENST00000327367	NM_005902.3	262	gAc/gGc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206658359	206658359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	98	513	0	ENST00000367120.3:c.1453G>A	p.Glu485Lys	p.E485K	ENST00000367120	NM_014002.3	485	Gag/Aag																																																																														
SESN3	143686	MSKCC	GRCh37	11	94910935	94910935	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	203	381	0	ENST00000536441.1:c.1195A>C	p.Thr399Pro	p.T399P	ENST00000536441	NM_144665.3	399	Acc/Ccc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118353162	118353162	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	95	269	0	ENST00000534358.1:c.4038A>C	p.Lys1346Asn	p.K1346N	ENST00000534358	NM_005933.3	1346	aaA/aaC																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499754	18499754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	53	239	0	ENST00000266497.5:c.1609G>A	p.Glu537Lys	p.E537K	ENST00000266497		537	Gaa/Aaa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865566	57865566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			752	158	643	1	ENST00000228682.2:c.3043G>A	p.Glu1015Lys	p.E1015K	ENST00000228682	NM_005269.2	1015	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133254014	133254014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	77	381	0	ENST00000320574.5:c.736G>A	p.Val246Ile	p.V246I	ENST00000320574	NM_006231.2	246	Gtc/Atc																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40678641	40678641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	68	430	0	ENST00000249776.8:c.383C>T	p.Ser128Leu	p.S128L	ENST00000249776	NM_033286.3	128	tCa/tTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041857	42041857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	130	345	0	ENST00000219905.7:c.6052G>A	p.Glu2018Lys	p.E2018K	ENST00000219905	NM_001164273.1	2018	Gaa/Aaa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40460303	40460303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			726	85	527	3	ENST00000345506.4:c.2014G>A	p.Asp672Asn	p.D672N	ENST00000345506	NM_003152.3	672	Gac/Aac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435458	56435458	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			773	285	619	1	ENST00000407977.2:c.1679A>C	p.Lys560Thr	p.K560T	ENST00000407977		560	aAg/aCg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291182	10291182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	133	467	0	ENST00000340748.4:c.289C>T	p.His97Tyr	p.H97Y	ENST00000340748		97	Cat/Tat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11095023	11095023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			775	209	939	0	ENST00000344626.4:c.196C>G	p.Gln66Glu	p.Q66E	ENST00000344626	NM_003072.3	66	Cag/Gag																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139099	50139099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	329	276	1	ENST00000246792.3:c.464C>T	p.Ser155Leu	p.S155L	ENST00000246792	NM_006270.3	155	tCa/tTa																																																																														
REL	5966	MSKCC	GRCh37	2	61147569	61147569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			57	15	49	0	ENST00000295025.8:c.974C>T	p.Ser325Leu	p.S325L	ENST00000295025	NM_002908.2	325	tCa/tTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084050	47084050	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	65	342	0	ENST00000409792.3:c.7238+1G>T		p.X2413_splice	ENST00000409792	NM_014159.6	2413																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164321	47164321	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	69	224	0	ENST00000409792.3:c.1805del	p.Met602ArgfsTer20	p.M602Rfs*20	ENST00000409792	NM_014159.6	602	aTg/ag																																																																														
RHOA	387	MSKCC	GRCh37	3	49397719	49397719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	271	440	0	ENST00000418115.1:c.505G>A	p.Glu169Lys	p.E169K	ENST00000418115	NM_001664.2	169	Gag/Aag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932639	49932639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			794	145	597	1	ENST00000296474.3:c.3232G>A	p.Glu1078Lys	p.E1078K	ENST00000296474	NM_002447.2	1078	Gag/Aag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643384	52643384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	66	314	0	ENST00000394830.3:c.2512G>A	p.Asp838Asn	p.D838N	ENST00000394830	NM_018313.4	838	Gat/Aat																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72891467	72891467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	69	384	0	ENST00000325599.8:c.295A>C	p.Lys99Gln	p.K99Q	ENST00000325599	NM_018130.2	99	Aaa/Caa																																																																														
TP63	8626	MSKCC	GRCh37	3	189585651	189585651	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	139	382	0	ENST00000264731.3:c.912C>A	p.Tyr304Ter	p.Y304*	ENST00000264731	NM_003722.4	304	taC/taA																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287398	33287398	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			903	120	452	0	ENST00000374542.5:c.1699T>G	p.Phe567Val	p.F567V	ENST00000374542	NM_001141970.1	567	Ttt/Gtt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072564	5072564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	97	296	0	ENST00000381652.3:c.1714C>T	p.Gln572Ter	p.Q572*	ENST00000381652	NM_004972.3	572	Caa/Taa																																																																														
SYK	6850	MSKCC	GRCh37	9	93627348	93627348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	141	335	0	ENST00000375746.1:c.815G>A	p.Gly272Asp	p.G272D	ENST00000375746	NM_001174167.1	272	gGc/gAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395225	139395225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	365	765	0	ENST00000277541.6:c.5713G>A	p.Asp1905Asn	p.D1905N	ENST00000277541	NM_017617.3	1905	Gac/Aac																																																																														
ATRX	546	MSKCC	GRCh37	X	76938092	76938092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047193-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	65	407	0	ENST00000373344.5:c.2656G>A	p.Glu886Lys	p.E886K	ENST00000373344	NM_000489.3	886	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	59	428	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29653151	29653151	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	49	411	0	ENST00000358273.4:c.5149G>T	p.Glu1717Ter	p.E1717*	ENST00000358273	NM_001042492.2	1717	Gag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151628	55151628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	61	674	1	ENST00000257290.5:c.2414G>T	p.Gly805Val	p.G805V	ENST00000257290	NM_006206.4	805	gGa/gTa																																																																														
BTK	695	MSKCC	GRCh37	X	100615635	100615635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	69	342	0	ENST00000308731.7:c.697C>A	p.Leu233Ile	p.L233I	ENST00000308731	NM_000061.2	233	Cta/Ata																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494642	2494642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	101	984	0	ENST00000355716.4:c.782C>T	p.Pro261Leu	p.P261L	ENST00000355716	NM_003820.2	261	cCt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579355	7579356	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAC			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	129	989	0	ENST00000269305.4:c.329_331dup	p.Arg110dup	p.R110dup	ENST00000269305	NM_001126112.2	110	ctg/cGTCtg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39607470	39607470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	28	279	0	ENST00000262039.4:c.1548G>T	p.Met516Ile	p.M516I	ENST00000262039	NM_002647.2	516	atG/atT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600426	10600427	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	132	998	1	ENST00000171111.5:c.1428_1429delinsTT	p.Gly477Cys	p.G477C	ENST00000171111	NM_203500.1	476	ggGGgc/ggTTgc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662376	227662376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	95	1046	0	ENST00000305123.5:c.1079G>T	p.Arg360Leu	p.R360L	ENST00000305123	NM_005544.2	360	cGg/cTg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264942	46264942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	96	391	0	ENST00000371998.3:c.1812G>T	p.Glu604Asp	p.E604D	ENST00000371998		604	gaG/gaT																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067362	37067362	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	72	480	0	ENST00000231790.2:c.1273A>T	p.Arg425Trp	p.R425W	ENST00000231790	NM_000249.3	425	Agg/Tgg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129936	55129936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	53	631	0	ENST00000257290.5:c.470C>A	p.Thr157Asn	p.T157N	ENST00000257290	NM_006206.4	157	aCt/aAt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176715820	176715820	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	94	390	0	ENST00000439151.2:c.6152G>A	p.Gly2051Asp	p.G2051D	ENST00000439151	NM_022455.4	2051	gGc/gAc																																																																														
IRF4	3662	MSKCC	GRCh37	6	407554	407554	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	43	430	0	ENST00000380956.4:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000380956	NM_001195286.1	438	Gaa/Taa																																																																														
BRAF	673	MSKCC	GRCh37	7	140434475	140434476	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	40	457	0	ENST00000288602.6:c.2222_2223del	p.Glu741GlyfsTer3	p.E741Gfs*3	ENST00000288602	NM_004333.4	741	gAG/g																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600426	10600426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	132	994	1	ENST00000171111.5:c.1429G>T	p.Gly477Cys	p.G477C	ENST00000171111	NM_203500.1	477	Ggc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	192	333	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	367	582	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	243	328	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959240	2959240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354898		P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	271	451	0	ENST00000396946.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000396946	NM_032415.4	759	cGg/cAg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50815323	50815323	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	81	429	0	ENST00000398568.2:c.1675+1G>C		p.X559_splice	ENST00000398568	NM_001042412.1	559																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41277955	41277955	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	168	321	0	ENST00000349496.5:c.1919T>A	p.Leu640Gln	p.L640Q	ENST00000349496	NM_001904.3	640	cTg/cAg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127933461	127933461	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0049545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	208	317	0	ENST00000373547.4:c.76-2A>T		p.X26_splice	ENST00000373547	NM_002721.4	26																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	421	413	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	152	348	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27058033	27058033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	216	441	0	ENST00000324856.7:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000324856	NM_006015.4	581	Cag/Tag																																																																														
BARD1	580	MSKCC	GRCh37	2	215646021	215646021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	221	452	0	ENST00000260947.4:c.577G>C	p.Glu193Gln	p.E193Q	ENST00000260947	NM_000465.2	193	Gag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295195	1295195	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0049813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	156	277	3				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49431358	49431358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	268	593	0	ENST00000301067.7:c.9781C>T	p.Gln3261Ter	p.Q3261*	ENST00000301067	NM_003482.3	3261	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087885	27087904	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACCTCGGCCACCCAGTG	GCCACCTCGGCCACCCAGTG	-			P-0049813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	314	554	0	ENST00000324856.7:c.2176_2195del	p.Pro726ValfsTer84	p.P726Vfs*84	ENST00000324856	NM_006015.4	724	atGCCACCTCGGCCACCCAGTGgc/atgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900498	3900498	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			826	365	799	0	ENST00000262367.5:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000262367	NM_004380.2	200	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	96	174	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	103	361	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	203	444	1	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	186	300	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47144880	47144880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	80	256	0	ENST00000409792.3:c.4873C>T	p.Arg1625Cys	p.R1625C	ENST00000409792	NM_014159.6	1625	Cgt/Tgt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749340	43749340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	108	243	0	ENST00000382044.4:c.1466C>G	p.Ser489Cys	p.S489C	ENST00000382044	NM_001141980.1	489	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	112	347	0	ENST00000269305.4:c.580C>A	p.Leu194Ile	p.L194I	ENST00000269305	NM_001126112.2	194	Ctt/Att																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484415	57484415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	67	246	0	ENST00000371085.3:c.596G>A	p.Arg199His	p.R199H	ENST00000371085	NM_000516.4	199	cGc/cAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162966	47162967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	63	211	0	ENST00000409792.3:c.3159dup	p.Thr1054TyrfsTer5	p.T1054Yfs*5	ENST00000409792	NM_014159.6	1053	-/T																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137522069	137522070	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	60	131	0	ENST00000367739.4:c.809_810del	p.Ile270LysfsTer4	p.I270Kfs*4	ENST00000367739	NM_000416.2	270	aTT/a																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152007146	152007146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	94	221	0	ENST00000262189.6:c.754C>A	p.His252Asn	p.H252N	ENST00000262189	NM_170606.2	252	Cat/Aat																																																																														
ATRX	546	MSKCC	GRCh37	X	76777853	76777853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	132	222	0	ENST00000373344.5:c.6863G>A	p.Arg2288His	p.R2288H	ENST00000373344	NM_000489.3	2288	cGt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945441	151945441	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	37	597	0	ENST00000262189.6:c.2078C>G	p.Thr693Ser	p.T693S	ENST00000262189	NM_170606.2	693	aCt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	293	550	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386409	31386409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	339	592	1	ENST00000328111.2:c.1634G>A	p.Arg545His	p.R545H	ENST00000328111	NM_006892.3	545	cGc/cAc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589684	69589684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	43	113	0	ENST00000168712.1:c.169C>T	p.Arg57Cys	p.R57C	ENST00000168712	NM_002007.2	57	Cgc/Tgc																																																																														
PGR	5241	MSKCC	GRCh37	11	100912745	100912745	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	83	344	0	ENST00000325455.5:c.2577G>C	p.Arg859Ser	p.R859S	ENST00000325455	NM_001202474.3	859	agG/agC																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647427	23647428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAA			P-0049846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	246	388	0	ENST00000261584.4:c.439_440insTTCT	p.Arg147IlefsTer22	p.R147Ifs*22	ENST00000261584	NM_024675.3	147	aga/aTTCTga																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945523	17945523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	245	436	0	ENST00000458235.1:c.2207A>C	p.Gln736Pro	p.Q736P	ENST00000458235	NM_000215.3	736	cAa/cCa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209712	98209712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	335	647	0	ENST00000331920.6:c.3826C>T	p.His1276Tyr	p.H1276Y	ENST00000331920	NM_000264.3	1276	Cat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	43	327	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	23	210	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443530	49443530	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	110	606	0	ENST00000301067.7:c.3841G>T	p.Gly1281Ter	p.G1281*	ENST00000301067	NM_003482.3	1281	Gga/Tga																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2215893	2215893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	162	654	0	ENST00000326181.6:c.95C>T	p.Thr32Met	p.T32M	ENST00000326181	NM_032271.2	32	aCg/aTg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900152	101900152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	28	185	0	ENST00000374994.4:c.586C>G	p.Leu196Val	p.L196V	ENST00000374994	NM_004612.2	196	Ctt/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0049886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	294	590	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99808295	99808295	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	91	260	0	ENST00000280892.6:c.394C>T	p.Arg132Ter	p.R132*	ENST00000280892	NM_001130678.1	132	Cga/Tga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730095	41730095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	93	380	0	ENST00000242208.4:c.434G>A	p.Ser145Asn	p.S145N	ENST00000242208	NM_002192.2	145	aGt/aAt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25978928	25978953	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAATTCATTGTTAAGGGCTGAGCC	AAGAATTCATTGTTAAGGGCTGAGCC	-			P-0049888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	55	363	0	ENST00000435504.4:c.970_995del	p.Gly324HisfsTer15	p.G324Hfs*15	ENST00000435504		324	GGCTCAGCCCTTAACAATGAATTCTTc/c																																																																														
REL	5966	MSKCC	GRCh37	2	61148975	61148975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	64	308	0	ENST00000295025.8:c.1165C>A	p.Pro389Thr	p.P389T	ENST00000295025	NM_002908.2	389	Ccc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	67	534	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	81	458	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	417	803	3	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625090	69625090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	49	711	0	ENST00000334134.2:c.703G>A	p.Glu235Lys	p.E235K	ENST00000334134	NM_005247.2	235	Gag/Aag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437836	110437836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	108	442	1	ENST00000375856.3:c.565C>T	p.Pro189Ser	p.P189S	ENST00000375856	NM_003749.2	189	Ccc/Tcc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589681	69589681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	14	209	0	ENST00000168712.1:c.172C>G	p.Leu58Val	p.L58V	ENST00000168712	NM_002007.2	58	Ctg/Gtg																																																																														
CASP8	841	MSKCC	GRCh37	2	202151181	202151181	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	27	197	0	ENST00000358485.4:c.1482-1G>C		p.X494_splice	ENST00000358485	NM_001080125.1	494																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36222823	36222823	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	111	812	0	ENST00000222270.7:c.5452G>T	p.Glu1818Ter	p.E1818*	ENST00000222270	NM_014727.1	1818	Gag/Tag																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125513771	125513771	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	105	425	0	ENST00000428830.2:c.899T>G	p.Phe300Cys	p.F300C	ENST00000428830	NM_001114121.2	300	tTc/tGc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138507	11138507	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	77	620	0	ENST00000344626.4:c.3263T>A	p.Ile1088Asn	p.I1088N	ENST00000344626	NM_003072.3	1088	aTt/aAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288454	15288454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	141	513	0	ENST00000263388.2:c.4285G>A	p.Glu1429Lys	p.E1429K	ENST00000263388	NM_000435.2	1429	Gag/Aag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99179930	99179930	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	77	627	0	ENST00000074304.5:c.1873G>A	p.Glu625Lys	p.E625K	ENST00000074304	NM_001134224.1	625	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570103	212570103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	39	338	0	ENST00000342788.4:c.1138G>A	p.Ala380Thr	p.A380T	ENST00000342788	NM_005235.2	380	Gca/Aca																																																																														
GNAS	2778	MSKCC	GRCh37	20	57466842	57466842	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	53	360	0	ENST00000371085.3:c.61G>C	p.Glu21Gln	p.E21Q	ENST00000371085	NM_000516.4	21	Gag/Cag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162636	47162636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	33	397	0	ENST00000409792.3:c.3490C>G	p.Gln1164Glu	p.Q1164E	ENST00000409792	NM_014159.6	1164	Cag/Gag																																																																														
MET	4233	MSKCC	GRCh37	7	116371749	116371749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	75	316	0	ENST00000397752.3:c.1228G>A	p.Glu410Lys	p.E410K	ENST00000397752	NM_000245.2	410	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	57	364	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086133	16086133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	67	567	0	ENST00000281043.3:c.1309G>A	p.Glu437Lys	p.E437K	ENST00000281043	NM_005378.4	437	Gag/Aag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557610	21557610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	81	672	1	ENST00000382592.4:c.2235G>A	p.Met745Ile	p.M745I	ENST00000382592	NM_014572.2	745	atG/atA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864302	151864302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	95	422	0	ENST00000262189.6:c.9679C>T	p.Pro3227Ser	p.P3227S	ENST00000262189	NM_170606.2	3227	Cca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	74	646	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	32	805	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	96	666	0	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044971	47044971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	121	450	2	ENST00000329236.7:c.2063G>A	p.Arg688His	p.R688H	ENST00000329236	NM_001204466.1	688	cGc/cAc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849858	156849858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	113	620	1	ENST00000524377.1:c.2114C>T	p.Thr705Ile	p.T705I	ENST00000524377	NM_002529.3	705	aCc/aTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557563	95557563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	41	332	0	ENST00000343455.3:c.5504A>G	p.Tyr1835Cys	p.Y1835C	ENST00000343455	NM_177438.2	1835	tAt/tGt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223666	53223667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	102	429	0	ENST00000375401.3:c.3692dup	p.Leu1232ThrfsTer68	p.L1232Tfs*68	ENST00000375401	NM_004187.3	1231	cca/ccCa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933462	36933477	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCCCCAGCCTGGCT	TGGCCCCAGCCTGGCT	CCA			P-0049892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	99	853	2	ENST00000361632.4:c.1810_1825delinsTGG	p.Ser604TrpfsTer9	p.S604Wfs*9	ENST00000361632		604	AGCCAGGCTGGGGCCAcc/TGGcc																																																																														
NF2	4771	MSKCC	GRCh37	22	30074249	30074258	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTGTCTTT	GCCTGTCTTT	-			P-0049893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	103	493	0	ENST00000338641.4:c.1511_1520del	p.Ser504ThrfsTer8	p.S504Tfs*8	ENST00000338641	NM_000268.3	504	aGCCTGTCTTTc/ac																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0049896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	33	331	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88677026	88677026	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	17	227	0	ENST00000372037.3:c.811T>G	p.Trp271Gly	p.W271G	ENST00000372037	NM_004329.2	271	Tgg/Ggg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16021261	16021261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	19	324	0	ENST00000268712.3:c.1996T>C	p.Tyr666His	p.Y666H	ENST00000268712	NM_006311.3	666	Tat/Cat																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247573	53247573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	106	192	0	ENST00000375401.3:c.236C>T	p.Thr79Met	p.T79M	ENST00000375401	NM_004187.3	79	aCg/aTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	49	548	0	ENST00000371953.3:c.70G>C	p.Asp24His	p.D24H	ENST00000371953	NM_000314.4	24	Gac/Cac																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575023	64575023	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0049898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	94	480	0	ENST00000337652.1:c.798+1G>A		p.X266_splice	ENST00000337652	NM_130803.2	266																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125479	47125479	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	28	448	0	ENST00000409792.3:c.5791C>T	p.Gln1931Ter	p.Q1931*	ENST00000409792	NM_014159.6	1931	Caa/Taa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286781	33286782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	50	460	0	ENST00000374542.5:c.2155dup	p.Thr719AsnfsTer22	p.T719Nfs*22	ENST00000374542	NM_001141970.1	719	act/aAct																																																																														
KIT	3815	MSKCC	GRCh37	4	55593597	55593611	+	inframe_deletion	In_Frame_Del	DEL	GTACAGTGGAAGGTT	GTACAGTGGAAGGTT	-			P-0049899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	44	284	0	ENST00000288135.5:c.1665_1679delACAGTGGAAGGTTGT	p.Gln556_Val560del	p.Q556_V560del	ENST00000288135	NM_000222.2	555	GTACAGTGGAAGGTT/-																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	50	387	0	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42042125	42042125	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	55	411	0	ENST00000219905.7:c.6324del	p.Lys2108AsnfsTer5	p.K2108Nfs*5	ENST00000219905	NM_001164273.1	2107	cAa/ca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505480	157505480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	50	370	0	ENST00000346085.5:c.3461G>C	p.Cys1154Ser	p.C1154S	ENST00000346085	NM_020732.3	1154	tGc/tCc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349953	70349953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	80	396	0	ENST00000374080.3:c.3936G>C	p.Leu1312Phe	p.L1312F	ENST00000374080		1312	ttG/ttC																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	216	442	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0049936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	217	435	2	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	480	849	0	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020477	14020477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	143	338	0	ENST00000311895.7:c.448C>T	p.Arg150Cys	p.R150C	ENST00000311895	NM_005236.2	150	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272515	15272515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	255	623	0	ENST00000263388.2:c.5924C>A	p.Pro1975His	p.P1975H	ENST00000263388	NM_000435.2	1975	cCc/cAc																																																																														
RHOA	387	MSKCC	GRCh37	3	49400020	49400020	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	85	508	0	ENST00000418115.1:c.317del	p.Phe106SerfsTer26	p.F106Sfs*26	ENST00000418115	NM_001664.2	106	tTc/tc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898707	134898707	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	91	275	0	ENST00000398015.3:c.1765C>G	p.Pro589Ala	p.P589A	ENST00000398015	NM_004441.4	589	Cca/Gca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38947457	38947457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	58	289	1	ENST00000357387.3:c.4223C>T	p.Ser1408Leu	p.S1408L	ENST00000357387	NM_152756.3	1408	tCa/tTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974768	21974769	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0049938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	140	268	0	ENST00000304494.5:c.58_59delinsAA	p.Ala20Lys	p.A20K	ENST00000304494	NM_000077.4	20	GCg/AAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974768	21974769	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0049938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	140	268	0	ENST00000304494.5:c.58_59delinsAA	p.Ala20Lys	p.A20K	ENST00000304494	NM_000077.4	20	GCg/AAg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	64	263	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108205741	108205741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	52	262	0	ENST00000278616.4:c.8056T>C	p.Phe2686Leu	p.F2686L	ENST00000278616	NM_000051.3	2686	Ttt/Ctt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493713	56493713	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	128	454	0	ENST00000267101.3:c.3029A>T	p.Asp1010Val	p.D1010V	ENST00000267101	NM_001982.3	1010	gAc/gTc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39234282	39234282	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	67	327	0	ENST00000402219.2:c.2563A>C	p.Ile855Leu	p.I855L	ENST00000402219	NM_005633.3	855	Att/Ctt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	99	612	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	38	380	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630440	90630440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	54	442	0	ENST00000330062.3:c.871G>T	p.Asp291Tyr	p.D291Y	ENST00000330062	NM_002168.2	291	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0049943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	329	672	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879229	151879229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	168	413	0	ENST00000262189.6:c.5716C>T	p.Arg1906Ter	p.R1906*	ENST00000262189	NM_170606.2	1906	Cga/Tga																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240156	41240156	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	65	78	0	ENST00000379561.5:c.194C>G	p.Ala65Gly	p.A65G	ENST00000379561	NM_002015.3	65	gCt/gGt																																																																														
VHL	7428	MSKCC	GRCh37	3	10183763	10183763	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	106	749	0	ENST00000256474.2:c.232A>C	p.Asn78His	p.N78H	ENST00000256474	NM_000551.3	78	Aat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579386	7579386	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0049946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	392	693	0	ENST00000269305.4:c.301A>T	p.Lys101Ter	p.K101*	ENST00000269305	NM_001126112.2	101	Aaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376911	118376911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	151	342	0	ENST00000534358.1:c.10304C>A	p.Thr3435Asn	p.T3435N	ENST00000534358	NM_005933.3	3435	aCt/aAt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748261	41748261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	327	648	0	ENST00000226382.2:c.508G>A	p.Gly170Ser	p.G170S	ENST00000226382	NM_003924.3	170	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0049948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	58	523	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	79	292	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030797	69030797	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	71	252	0	ENST00000288368.4:c.3339C>G	p.Ser1113Arg	p.S1113R	ENST00000288368	NM_024870.2	1113	agC/agG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	160	336	0				ENST00000310581	NM_198253.2																																																																																
BMPR1A	657	MSKCC	GRCh37	10	88635786	88635786	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	15	268	0	ENST00000372037.3:c.11T>G	p.Leu4Arg	p.L4R	ENST00000372037	NM_004329.2	4	cTa/cGa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95592960	95592960	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	32	391	0	ENST00000343455.3:c.860C>G	p.Ser287Cys	p.S287C	ENST00000343455	NM_177438.2	287	tCt/tGt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0049954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	33	725	0	ENST00000250448.2:c.754_774delAACATGTTCGAGAACGGCTGC	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949985	44949985	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	20	180	0	ENST00000377967.4:c.3754G>C	p.Ala1252Pro	p.A1252P	ENST00000377967	NM_021140.2	1252	Gca/Cca																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804149	46804163	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CTCTTAAGGGGTAGC	CTCTTAAGGGGTAGC	-			P-0049954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	26	686	0	ENST00000290295.7:c.844_*3del		p.*282*	ENST00000290295	NM_006361.5	282																																																																															
TP63	8626	MSKCC	GRCh37	3	189456528	189456528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	39	560	0	ENST00000264731.3:c.289C>A	p.Arg97Ser	p.R97S	ENST00000264731	NM_003722.4	97	Cgc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	159	479	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	214	411	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106733	27106734	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	217	649	0	ENST00000324856.7:c.6347_6348del	p.Arg2116ThrfsTer33	p.R2116Tfs*33	ENST00000324856	NM_006015.4	2115	cAG/c																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431563	6431563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	53	188	0	ENST00000356142.4:c.116A>G	p.Asn39Ser	p.N39S	ENST00000356142	NM_018890.3	39	aAt/aGt																																																																														
ATM	472	MSKCC	GRCh37	11	108196798	108196798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	107	289	0	ENST00000278616.4:c.6821C>A	p.Ala2274Glu	p.A2274E	ENST00000278616	NM_000051.3	2274	gCa/gAa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119901	70119917	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCACCCGGGGGTGC	CGGCCACCCGGGGGTGC	-			P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	281	761	0	ENST00000245479.2:c.910_926del	p.Pro304AlafsTer268	p.P304Afs*268	ENST00000245479	NM_000346.3	301	aaCGGCCACCCGGGGGTGCcg/aacg																																																																														
MED12	9968	MSKCC	GRCh37	X	70357742	70357742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	193	460	0	ENST00000374080.3:c.5993A>G	p.Tyr1998Cys	p.Y1998C	ENST00000374080		1998	tAt/tGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711924	89711924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	195	525	0	ENST00000371953.3:c.542T>C	p.Leu181Pro	p.L181P	ENST00000371953	NM_000314.4	181	cTg/cCg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371638	55371638	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2472	192	866	1	ENST00000297316.4:c.328A>G	p.Thr110Ala	p.T110A	ENST00000297316	NM_022454.3	110	Acg/Gcg																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	530	669	0	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	169	298	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743858	40743858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	88	373	1	ENST00000373198.4:c.3137G>A	p.Arg1046His	p.R1046H	ENST00000373198	NM_133170.3	1046	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577047	7577047	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	510	597	0	ENST00000269305.4:c.891del	p.His297GlnfsTer48	p.H297Qfs*48	ENST00000269305	NM_001126112.2	297	caC/ca																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325911	65325911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	71	407	0	ENST00000342505.4:c.1211C>T	p.Ser404Phe	p.S404F	ENST00000342505	NM_002227.2	404	tCc/tTc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243809331	243809331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	60	265	0	ENST00000263826.5:c.293G>T	p.Trp98Leu	p.W98L	ENST00000263826	NM_005465.4	98	tGg/tTg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741900	17741900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	45	174	0	ENST00000250003.3:c.571G>C	p.Glu191Gln	p.E191Q	ENST00000250003	NM_002478.4	191	Gag/Cag																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135348	30135348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	99	333	0	ENST00000331968.5:c.470C>T	p.Pro157Leu	p.P157L	ENST00000331968	NM_002742.2	157	cCa/cTa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600506	10600506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	256	526	0	ENST00000171111.5:c.1349G>T	p.Trp450Leu	p.W450L	ENST00000171111	NM_203500.1	450	tGg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097206	11097206	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	361	817	0	ENST00000344626.4:c.697G>C	p.Gly233Arg	p.G233R	ENST00000344626	NM_003072.3	233	Ggc/Cgc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713874	30713874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	136	532	0	ENST00000359013.4:c.1274T>C	p.Leu425Pro	p.L425P	ENST00000359013	NM_001024847.2	425	cTt/cCt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47143017	47143017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	200	384	0	ENST00000409792.3:c.4946G>T	p.Gly1649Val	p.G1649V	ENST00000409792	NM_014159.6	1649	gGg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187531137	187531137	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	69	291	0	ENST00000441802.2:c.9886G>T	p.Glu3296Ter	p.E3296*	ENST00000441802	NM_005245.3	3296	Gag/Tag																																																																														
HGF	3082	MSKCC	GRCh37	7	81346633	81346633	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	188	245	0	ENST00000222390.5:c.1320C>A	p.Cys440Ter	p.C440*	ENST00000222390	NM_000601.4	440	tgC/tgA																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930367	39930367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	91	379	0	ENST00000378444.4:c.3097G>T	p.Gly1033Cys	p.G1033C	ENST00000378444	NM_001123385.1	1033	Ggt/Tgt																																																																														
AR	367	MSKCC	GRCh37	X	66765842	66765842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	185	764	0	ENST00000374690.3:c.854C>A	p.Ala285Asp	p.A285D	ENST00000374690	NM_000044.3	285	gCc/gAc																																																																														
AR	367	MSKCC	GRCh37	X	66766280	66766280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	85	425	0	ENST00000374690.3:c.1292C>A	p.Ala431Asp	p.A431D	ENST00000374690	NM_000044.3	431	gCt/gAt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185184	123185184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	116	287	0	ENST00000218089.9:c.1136C>A	p.Thr379Asn	p.T379N	ENST00000218089	NM_001042749.1	379	aCc/aAc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45854918	45854918	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	302	690	0	ENST00000391945.4:c.2252A>C	p.Lys751Thr	p.K751T	ENST00000391945	NM_000400.3	751	aAg/aCg																																																																														
TET1	80312	MSKCC	GRCh37	10	70405103	70405103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199844508		P-0049966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	23	552	1	ENST00000373644.4:c.2617G>A	p.Val873Ile	p.V873I	ENST00000373644	NM_030625.2	873	Gtt/Att																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157510911	157510911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	14	462	0	ENST00000346085.5:c.3686G>T	p.Gly1229Val	p.G1229V	ENST00000346085	NM_020732.3	1229	gGa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	82	377	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145770	11145770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	42	788	0	ENST00000344626.4:c.4132G>A	p.Asp1378Asn	p.D1378N	ENST00000344626	NM_003072.3	1378	Gac/Aac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349405	89349405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	53	857	0	ENST00000301030.4:c.3545G>A	p.Arg1182Lys	p.R1182K	ENST00000301030	NM_001256183.1	1182	aGa/aAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349497	89349497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	33	626	0	ENST00000301030.4:c.3453G>C	p.Glu1151Asp	p.E1151D	ENST00000301030	NM_001256183.1	1151	gaG/gaC																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161673	56161673	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	26	312	0	ENST00000399503.3:c.1170G>C	p.Gln390His	p.Q390H	ENST00000399503	NM_005921.1	390	caG/caC																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	101	369	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	73	525	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	149	764	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	119	664	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	54	930	3	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	30	322	1	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	44	331	8	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	41	386	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	115	363	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	130	711	7	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	324	892	9	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	61	830	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
SMO	6608	MSKCC	GRCh37	7	128843429	128843429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs115491500		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	92	485	0	ENST00000249373.3:c.536C>T	p.Thr179Met	p.T179M	ENST00000249373	NM_005631.4	179	aCg/aTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563296	21563296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	174	1017	0	ENST00000382592.4:c.623C>T	p.Pro208Leu	p.P208L	ENST00000382592	NM_014572.2	208	cCg/cTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136949	64136949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	131	688	0	ENST00000334205.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000334205	NM_003942.2	487	cGg/cAg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	108	475	1	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	83	627	8	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
POLE	5426	MSKCC	GRCh37	12	133248860	133248860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116260568		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	50	664	3	ENST00000320574.5:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000320574	NM_006231.2	579	Cgc/Tgc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612341	1612341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	237	939	1	ENST00000344749.5:c.1678C>T	p.Arg560Trp	p.R560W	ENST00000344749	NM_001136139.2	560	Cgg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	171	973	5	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	118	420	1	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209652	98209652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	53	703	1	ENST00000331920.6:c.3886G>A	p.Gly1296Arg	p.G1296R	ENST00000331920	NM_000264.3	1296	Gga/Aga																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	31	545	0	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456355	99456355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	31	501	0	ENST00000268035.6:c.1672C>T	p.Pro558Ser	p.P558S	ENST00000268035	NM_000875.3	558	Ccc/Tcc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	59	892	5	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958190	2958190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	119	718	2	ENST00000396946.4:c.2542C>T	p.Arg848Cys	p.R848C	ENST00000396946	NM_032415.4	848	Cgc/Tgc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	74	451	2	ENST00000399788.2:c.3597dupA	p.Gly1200ArgfsTer7	p.G1200Rfs*7	ENST00000399788	NM_001042603.1	1199	-/A																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709529	176709529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	12	322	0	ENST00000439151.2:c.5956C>T	p.Arg1986Cys	p.R1986C	ENST00000439151	NM_022455.4	1986	Cgc/Tgc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	131	423	2	ENST00000289153.2:c.1810delC	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732911	30732911	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	65	265	0	ENST00000359013.4:c.1600-1G>T		p.X534_splice	ENST00000359013	NM_001024847.2	534																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	158	912	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	103	451	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347117	89347117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	35	725	0	ENST00000301030.4:c.5833G>A	p.Glu1945Lys	p.E1945K	ENST00000301030	NM_001256183.1	1945	Gag/Aag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	27	266	0	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	70	529	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845528	63845528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	23	247	0	ENST00000279873.7:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000279873	NM_032199.2	423	Cgg/Tgg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	20	361	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133806	55133806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77524207		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	69	440	1	ENST00000257290.5:c.1019G>A	p.Arg340Gln	p.R340Q	ENST00000257290	NM_006206.4	340	cGg/cAg																																																																														
SDHA	6389	MSKCC	GRCh37	5	228310	228310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	12	253	0	ENST00000264932.6:c.632A>G	p.Tyr211Cys	p.Y211C	ENST00000264932	NM_004168.2	211	tAt/tGt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141572693	141572693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	114	583	1	ENST00000220592.5:c.377G>A	p.Arg126His	p.R126H	ENST00000220592	NM_012154.3	126	cGc/cAc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500436	99500436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	32	774	0	ENST00000268035.6:c.3869C>T	p.Pro1290Leu	p.P1290L	ENST00000268035	NM_000875.3	1290	cCg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218450	36218451	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	123	776	0	ENST00000222270.7:c.4235dup	p.Leu1413ProfsTer265	p.L1413Pfs*265	ENST00000222270	NM_014727.1	1410	cag/caGg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716199	243716199	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	84	490	0	ENST00000263826.5:c.995T>C	p.Leu332Pro	p.L332P	ENST00000263826	NM_005465.4	332	cTa/cCa																																																																														
REL	5966	MSKCC	GRCh37	2	61145678	61145678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	33	421	0	ENST00000295025.8:c.790C>T	p.Arg264Trp	p.R264W	ENST00000295025	NM_002908.2	264	Cgg/Tgg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63526140	63526140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	127	542	0	ENST00000307078.5:c.2486C>T	p.Pro829Leu	p.P829L	ENST00000307078	NM_004655.3	829	cCg/cTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70345918	70345918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	61	528	1	ENST00000374080.3:c.2455C>T	p.Arg819Trp	p.R819W	ENST00000374080		819	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874749	151874749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	98	373	0	ENST00000262189.6:c.7789C>G	p.Pro2597Ala	p.P2597A	ENST00000262189	NM_170606.2	2597	Cca/Gca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212236	36212236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	167	705	1	ENST00000222270.7:c.1987G>A	p.Glu663Lys	p.E663K	ENST00000222270	NM_014727.1	663	Gaa/Aaa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504591	103504591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	46	299	0	ENST00000355739.4:c.212G>A	p.Arg71His	p.R71H	ENST00000355739	NM_000123.3	71	cGt/cAt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31504699	31504699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	71	503	1	ENST00000344624.3:c.1631G>A	p.Arg544His	p.R544H	ENST00000344624		544	cGc/cAc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204623	128204623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	70	733	0	ENST00000341105.2:c.818del	p.Gly273AspfsTer53	p.G273Dfs*53	ENST00000341105	NM_032638.4	273	gGa/ga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165569	47165569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	109	519	0	ENST00000409792.3:c.557C>A	p.Pro186Gln	p.P186Q	ENST00000409792	NM_014159.6	186	cCg/cAg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735643	204735643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	50	335	0	ENST00000302823.3:c.444G>T	p.Gln148His	p.Q148H	ENST00000302823	NM_005214.4	148	caG/caT																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640404	3640404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	67	838	1	ENST00000294008.3:c.3235C>T	p.Pro1079Ser	p.P1079S	ENST00000294008	NM_032444.2	1079	Cca/Tca																																																																														
TERT	7015	MSKCC	GRCh37	5	1278818	1278818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	185	697	1	ENST00000310581.5:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000310581	NM_198253.2	742	Cgt/Tgt																																																																														
PARK2	0	MSKCC	GRCh37	6	162394398	162394398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	51	384	0	ENST00000366898.1:c.670G>T	p.Val224Leu	p.V224L	ENST00000366898	NM_004562.2	224	Gta/Tta																																																																														
POLE	5426	MSKCC	GRCh37	12	133245023	133245024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	47	895	6	ENST00000320574.5:c.2091dupC	p.Phe699ValfsTer11	p.F699Vfs*11	ENST00000320574	NM_006231.2	697	-/C																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797890	45797890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146044717		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	196	889	0	ENST00000372115.3:c.839G>A	p.Arg280His	p.R280H	ENST00000372115	NM_001048171.1	280	cGc/cAc																																																																														
ATM	472	MSKCC	GRCh37	11	108160330	108160330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	12	195	0	ENST00000278616.4:c.4238A>C	p.Asp1413Ala	p.D1413A	ENST00000278616	NM_000051.3	1413	gAt/gCt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	495069	495069	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	61	374	0	ENST00000399788.2:c.237A>T	p.Glu79Asp	p.E79D	ENST00000399788	NM_001042603.1	79	gaA/gaT																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435212	18435212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	28	306	0	ENST00000266497.5:c.197C>A	p.Pro66His	p.P66H	ENST00000266497		66	cCc/cAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112332	115112332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	109	335	0	ENST00000257566.3:c.1408G>A	p.Ala470Thr	p.A470T	ENST00000257566	NM_016569.3	470	Gcg/Acg																																																																														
POLE	5426	MSKCC	GRCh37	12	133263889	133263889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	108	483	0	ENST00000320574.5:c.13A>G	p.Ser5Gly	p.S5G	ENST00000320574	NM_006231.2	5	Agc/Ggc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066734	30066734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	39	363	0	ENST00000331968.5:c.2397G>A	p.Met799Ile	p.M799I	ENST00000331968	NM_002742.2	799	atG/atA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778480	3778480	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	132	802	0	ENST00000262367.5:c.6568C>T	p.Arg2190Ter	p.R2190*	ENST00000262367	NM_004380.2	2190	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991631	72991631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	114	634	0	ENST00000268489.5:c.2414G>A	p.Arg805Gln	p.R805Q	ENST00000268489	NM_006885.3	805	cGg/cAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942139	81942139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	83	637	2	ENST00000359376.3:c.1676G>A	p.Gly559Asp	p.G559D	ENST00000359376	NM_002661.3	559	gGc/gAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29585450	29585450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	31	477	0	ENST00000358273.4:c.4262C>T	p.Pro1421Leu	p.P1421L	ENST00000358273	NM_001042492.2	1421	cCg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436091	56436092	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	151	592	0	ENST00000407977.2:c.1045dup	p.Ala349GlyfsTer94	p.A349Gfs*94	ENST00000407977		349	gcc/gGcc																																																																														
INSR	3643	MSKCC	GRCh37	19	7125355	7125355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	41	771	0	ENST00000302850.5:c.3197G>A	p.Arg1066Gln	p.R1066Q	ENST00000302850	NM_000208.2	1066	cGa/cAa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252790	10252790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	113	703	2	ENST00000340748.4:c.3175C>A	p.Arg1059Ser	p.R1059S	ENST00000340748		1059	Cgc/Agc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288831	15288831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	109	281	0	ENST00000263388.2:c.3908C>T	p.Pro1303Leu	p.P1303L	ENST00000263388	NM_000435.2	1303	cCa/cTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298748	15298748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	145	811	0	ENST00000263388.2:c.1550G>T	p.Arg517Met	p.R517M	ENST00000263388	NM_000435.2	517	aGg/aTg																																																																														
AXL	558	MSKCC	GRCh37	19	41763407	41763407	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	40	510	0	ENST00000301178.4:c.2209del	p.Val737Ter	p.V737*	ENST00000301178	NM_021913.4	736	Ggg/gg																																																																														
ALK	238	MSKCC	GRCh37	2	30143420	30143421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	142	594	0	ENST00000389048.3:c.105dup	p.Pro36AlafsTer22	p.P36Afs*22	ENST00000389048	NM_004304.4	35	-/G																																																																														
CASP8	841	MSKCC	GRCh37	2	202150010	202150011	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	79	538	0	ENST00000358485.4:c.1452_1453del	p.Cys485ProfsTer12	p.C485Pfs*12	ENST00000358485	NM_001080125.1	484	cTT/c																																																																														
CASP8	841	MSKCC	GRCh37	2	202151253	202151254	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	25	334	0	ENST00000358485.4:c.1557dupG	p.Lys520GlufsTer19	p.K520Efs*19	ENST00000358485	NM_001080125.1	518	atg/atGg																																																																														
EP300	2033	MSKCC	GRCh37	22	41547997	41547997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	144	528	1	ENST00000263253.7:c.2978A>G	p.Gln993Arg	p.Q993R	ENST00000263253	NM_001429.3	993	cAg/cGg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098311	47098311	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	33	284	0	ENST00000409792.3:c.6963G>T	p.Gln2321His	p.Q2321H	ENST00000409792	NM_014159.6	2321	caG/caT																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149245706	149245707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	132	574	0	ENST00000360632.3:c.821dup	p.Val275SerfsTer19	p.V275Sfs*19	ENST00000360632	NM_015472.4	274	cca/ccCa																																																																														
TET2	54790	MSKCC	GRCh37	4	106196873	106196873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	51	324	0	ENST00000380013.4:c.5206G>A	p.Ala1736Thr	p.A1736T	ENST00000380013	NM_001127208.2	1736	Gcc/Acc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177644	56177644	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149242419		P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	99	389	1	ENST00000399503.3:c.2617G>A	p.Val873Ile	p.V873I	ENST00000399503	NM_005921.1	873	Gta/Ata																																																																														
IRF4	3662	MSKCC	GRCh37	6	397168	397168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	112	441	0	ENST00000380956.4:c.553C>A	p.Gln185Lys	p.Q185K	ENST00000380956	NM_001195286.1	185	Cag/Aag																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324179	31324179	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	77	651	0	ENST00000412585.2:c.384del	p.Pro129ArgfsTer22	p.P129Rfs*22	ENST00000412585	NM_005514.6	128	ggG/gg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894827	101894827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	70	234	0	ENST00000374994.4:c.380C>T	p.Ala127Val	p.A127V	ENST00000374994	NM_004612.2	127	gCa/gTa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223790	53223790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	63	954	0	ENST00000375401.3:c.3569G>A	p.Cys1190Tyr	p.C1190Y	ENST00000375401	NM_004187.3	1190	tGt/tAt																																																																														
AR	367	MSKCC	GRCh37	X	66863145	66863145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	82	577	0	ENST00000374690.3:c.1664C>A	p.Pro555Gln	p.P555Q	ENST00000374690	NM_000044.3	555	cCa/cAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70352357	70352357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	66	571	1	ENST00000374080.3:c.4384C>T	p.Arg1462Cys	p.R1462C	ENST00000374080		1462	Cgc/Tgc																																																																														
MED12	9968	MSKCC	GRCh37	X	70356781	70356781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	175	691	2	ENST00000374080.3:c.5453C>T	p.Pro1818Leu	p.P1818L	ENST00000374080		1818	cCg/cTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70360643	70360643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	49	365	0	ENST00000374080.3:c.6203A>G	p.Gln2068Arg	p.Q2068R	ENST00000374080		2068	cAg/cGg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123210228	123210228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	31	484	0	ENST00000218089.9:c.2580G>T	p.Lys860Asn	p.K860N	ENST00000218089	NM_001042749.1	860	aaG/aaT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215368	123215368	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	19	348	0	ENST00000218089.9:c.2914A>G	p.Met972Val	p.M972V	ENST00000218089	NM_001042749.1	972	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	444	494	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533012	63533012	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200201811		P-0046749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			814	172	651	1	ENST00000307078.5:c.1882C>T	p.Arg628Trp	p.R628W	ENST00000307078	NM_004655.3	628	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193920817		P-0048569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	252	1067	2	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
RB1	5925	MSKCC	GRCh37	13	48934155	48934155	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0048569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	34	290	0	ENST00000267163.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000267163	NM_000321.2	204	Gaa/Taa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56477654	56477654	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			996	124	673	0	ENST00000267101.3:c.202A>G	p.Thr68Ala	p.T68A	ENST00000267101	NM_001982.3	68	Acg/Gcg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563357	21563360	+	frameshift_variant	Frame_Shift_Del	DEL	CGCT	CGCT	-			P-0048569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1511	110	1286	0	ENST00000382592.4:c.559_562del	p.Ser187ValfsTer52	p.S187Vfs*52	ENST00000382592	NM_014572.2	187	AGCGgt/gt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40364181	40364181	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			989	144	920	0	ENST00000293328.3:c.1501A>G	p.Lys501Glu	p.K501E	ENST00000293328	NM_012448.3	501	Aaa/Gaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41553204	41553204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	39	469	0	ENST00000263253.7:c.3293A>T	p.Asp1098Val	p.D1098V	ENST00000263253	NM_001429.3	1098	gAt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	227	357	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	140	559	2	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248444	212248444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	78	296	1	ENST00000342788.4:c.3823C>T	p.Arg1275Trp	p.R1275W	ENST00000342788	NM_005235.2	1275	Cgg/Tgg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099468	157099470	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs1429292576		P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	88	378	2	ENST00000346085.5:c.413_415del	p.Asn138del	p.N138del	ENST00000346085	NM_020732.3	135	tcCAAc/tcc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732958	30732958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	88	321	0	ENST00000359013.4:c.1646A>G	p.Asp549Gly	p.D549G	ENST00000359013	NM_001024847.2	549	gAc/gGc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73334771	73334771	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	61	177	0	ENST00000377767.4:c.2689G>T	p.Glu897Ter	p.E897*	ENST00000377767	NM_014953.3	897	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244249	153244250	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	65	273	0	ENST00000281708.4:c.1907_1908del	p.Phe636CysfsTer7	p.F636Cfs*7	ENST00000281708	NM_033632.3	636	tTT/t																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268163	153268163	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	79	287	1	ENST00000281708.4:c.645del	p.Asn216MetfsTer23	p.N216Mfs*23	ENST00000281708	NM_033632.3	215	gcC/gc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324102	31324111	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTCCTCGT	AGGTCCTCGT	-			P-0049565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	52	376	0	ENST00000412585.2:c.452_461del	p.Asn151SerfsTer60	p.N151Sfs*60	ENST00000412585	NM_005514.6	151	aACGAGGACCTg/ag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	19	394	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	21	698	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27102160	27102161	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0049566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	37	388	0	ENST00000324856.7:c.5087dup	p.Tyr1696Ter	p.Y1696*	ENST00000324856	NM_006015.4	1696	tat/tAat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0049567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	506	662	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	152	184	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																														
JAK3	3718	MSKCC	GRCh37	19	17951085	17951085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	338	463	0	ENST00000458235.1:c.1208G>A	p.Arg403His	p.R403H	ENST00000458235	NM_000215.3	403	cGc/cAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912200	114912200	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	199	385	0	ENST00000543371.1:c.1269+1G>A		p.X423_splice	ENST00000543371	NM_001198531.1	423																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861180	57861180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	202	436	0	ENST00000228682.2:c.977C>T	p.Thr326Met	p.T326M	ENST00000228682	NM_005269.2	326	aCg/aTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717727	89717727	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	143	327	0	ENST00000371953.3:c.752G>C	p.Gly251Ala	p.G251A	ENST00000371953	NM_000314.4	251	gGt/gCt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GTT			P-0049568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	29	543	0	ENST00000275493.2:c.2308_2309insGTT	p.Asp770delinsGlyTyr	p.D770delinsGY	ENST00000275493	NM_005228.3	770	gac/gGTTac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	141	530	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	25	266	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8501056	8501056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	47	194	0	ENST00000356435.5:c.1826C>T	p.Pro609Leu	p.P609L	ENST00000356435		609	cCg/cTg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206647813	206647813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	39	354	0	ENST00000367120.3:c.227C>T	p.Thr76Met	p.T76M	ENST00000367120	NM_014002.3	76	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112174022	112174022	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	29	272	0	ENST00000257430.4:c.2731G>T	p.Glu911Ter	p.E911*	ENST00000257430	NM_000038.5	911	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	113	354	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	344	563	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	177	524	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	177	524	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112177049	112177049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	73	326	0	ENST00000257430.4:c.5758C>T	p.Arg1920Ter	p.R1920*	ENST00000257430	NM_000038.5	1920	Cga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	118	434	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
RET	5979	MSKCC	GRCh37	10	43610162	43610162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	163	827	0	ENST00000355710.3:c.2114C>T	p.Ser705Phe	p.S705F	ENST00000355710	NM_020975.4	705	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	29543748	29543748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	81	350	0	ENST00000389048.3:c.1415G>A	p.Arg472Gln	p.R472Q	ENST00000389048	NM_004304.4	472	cGg/cAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967209	93967209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	68	287	0	ENST00000369303.4:c.2143G>A	p.Glu715Lys	p.E715K	ENST00000369303	NM_004440.3	715	Gaa/Aaa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123298174	123298174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	88	424	0	ENST00000358487.5:c.680G>A	p.Gly227Glu	p.G227E	ENST00000358487	NM_000141.4	227	gGa/gAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992414	72992414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62620235		P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	190	793	1	ENST00000268489.5:c.1631C>T	p.Ser544Leu	p.S544L	ENST00000268489	NM_006885.3	544	tCg/tTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81381466	81381466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	63	249	0	ENST00000222390.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000222390	NM_000601.4	199	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319913	8319913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	71	261	0	ENST00000356435.5:c.5588G>A	p.Arg1863Lys	p.R1863K	ENST00000356435		1863	aGa/aAa																																																																														
SYK	6850	MSKCC	GRCh37	9	93629456	93629456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	82	294	0	ENST00000375746.1:c.890C>T	p.Ser297Phe	p.S297F	ENST00000375746	NM_001174167.1	297	tCc/tTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141128	55141128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	81	299	0	ENST00000257290.5:c.1774G>A	p.Gly592Arg	p.G592R	ENST00000257290	NM_006206.4	592	Gga/Aga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	177	524	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650568	18650568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	74	391	0	ENST00000266497.5:c.2779C>T	p.Arg927Cys	p.R927C	ENST00000266497		927	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970906	21970906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	219	777	0	ENST00000304494.5:c.452C>T	p.Pro151Leu	p.P151L	ENST00000304494	NM_000077.4	151	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662625	117662625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	116	406	0	ENST00000368508.3:c.4840C>T	p.Pro1614Ser	p.P1614S	ENST00000368508	NM_002944.2	1614	Cca/Tca																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225657	26225657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202067024		P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	193	796	1	ENST00000360408.1:c.275C>T	p.Ala92Val	p.A92V	ENST00000360408	NM_003532.2	92	gCg/gTg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866409	42866409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	234	755	0	ENST00000398585.3:c.223G>A	p.Glu75Lys	p.E75K	ENST00000398585	NM_001135099.1	75	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628329	187628329	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	147	573	0	ENST00000441802.2:c.2653C>T	p.Arg885Ter	p.R885*	ENST00000441802	NM_005245.3	885	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858687	9858687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	109	448	0	ENST00000330684.3:c.2714C>T	p.Ser905Phe	p.S905F	ENST00000330684	NM_001134407.1	905	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40789994	40789994	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	80	445	0	ENST00000373198.4:c.2737G>A	p.Glu913Lys	p.E913K	ENST00000373198	NM_133170.3	913	Gag/Aag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356361	66356361	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772108237		P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	112	382	0	ENST00000273854.3:c.1136C>T	p.Pro379Leu	p.P379L	ENST00000273854	NM_004439.5	379	cCg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747137	40747138	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	94	462	1	ENST00000373198.4:c.2944_2945delinsTT	p.Pro982Leu	p.P982L	ENST00000373198	NM_133170.3	982	CCg/TTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	80057394	80057394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	61	307	0	ENST00000265081.6:c.1793C>T	p.Ser598Leu	p.S598L	ENST00000265081	NM_002439.4	598	tCg/tTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523482	106523482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	63	236	0	ENST00000359195.3:c.2634G>A	p.Met878Ile	p.M878I	ENST00000359195	NM_002649.2	878	atG/atA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031690	69031690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	84	366	0	ENST00000288368.4:c.3445C>T	p.Arg1149Cys	p.R1149C	ENST00000288368	NM_024870.2	1149	Cgc/Tgc																																																																														
SESN1	27244	MSKCC	GRCh37	6	109309771	109309771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	131	410	0	ENST00000436639.2:c.1544G>A	p.Trp515Ter	p.W515*	ENST00000436639	NM_014454.2	515	tGg/tAg																																																																														
ALK	238	MSKCC	GRCh37	2	29551311	29551311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	163	611	0	ENST00000389048.3:c.1319C>T	p.Ser440Phe	p.S440F	ENST00000389048	NM_004304.4	440	tCc/tTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678626	88678626	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	83	364	0	ENST00000360948.2:c.910C>T	p.Pro304Ser	p.P304S	ENST00000360948	NM_001012338.2	304	Ccc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770557	40770557	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	92	368	0	ENST00000373198.4:c.2825C>T	p.Ser942Phe	p.S942F	ENST00000373198	NM_133170.3	942	tCc/tTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	442738	442738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	107	462	0	ENST00000399788.2:c.1568C>T	p.Pro523Leu	p.P523L	ENST00000399788	NM_001042603.1	523	cCc/cTc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23619306	23619306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	135	429	0	ENST00000261584.4:c.3229C>T	p.Pro1077Ser	p.P1077S	ENST00000261584	NM_024675.3	1077	Ccc/Tcc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591862	48591862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	30	352	0	ENST00000342988.3:c.1025C>T	p.Pro342Leu	p.P342L	ENST00000342988	NM_005359.5	342	cCt/cTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528774	8528774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	73	308	0	ENST00000356435.5:c.358C>T	p.Gln120Ter	p.Q120*	ENST00000356435		120	Caa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517880	8517880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	54	310	0	ENST00000356435.5:c.1511C>T	p.Ser504Leu	p.S504L	ENST00000356435		504	tCa/tTa																																																																														
CD79B	974	MSKCC	GRCh37	17	62007560	62007560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	148	758	1	ENST00000392795.3:c.307G>A	p.Glu103Lys	p.E103K	ENST00000392795	NM_001039933.1	103	Gaa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11300446	11300446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	145	622	0	ENST00000361445.4:c.1700C>T	p.Ser567Phe	p.S567F	ENST00000361445	NM_004958.3	567	tCt/tTt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123276919	123276919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	78	364	0	ENST00000358487.5:c.998del	p.Thr333IlefsTer25	p.T333Ifs*25	ENST00000358487	NM_000141.4	333	aCt/at																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161481	2161481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	288	652	1	ENST00000434045.2:c.46G>A	p.Glu16Lys	p.E16K	ENST00000434045	NM_001127598.1	16	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425353	49425353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	176	859	1	ENST00000301067.7:c.13135C>T	p.Pro4379Ser	p.P4379S	ENST00000301067	NM_003482.3	4379	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433988	49433988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	198	901	0	ENST00000301067.7:c.7565C>T	p.Pro2522Leu	p.P2522L	ENST00000301067	NM_003482.3	2522	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435167	49435167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	139	600	0	ENST00000301067.7:c.6386C>T	p.Pro2129Leu	p.P2129L	ENST00000301067	NM_003482.3	2129	cCc/cTc																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811648	102811648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	135	585	1	ENST00000307046.8:c.536G>A	p.Arg179Lys	p.R179K	ENST00000307046	NM_001111285.1	179	aGg/aAg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813373	102813373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	160	600	0	ENST00000307046.8:c.316G>A	p.Glu106Lys	p.E106K	ENST00000307046	NM_001111285.1	106	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133245480	133245480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	114	551	0	ENST00000320574.5:c.1840C>T	p.Pro614Ser	p.P614S	ENST00000320574	NM_006231.2	614	Ccc/Tcc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004229	29004229	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	89	316	0	ENST00000282397.4:c.1064T>G	p.Leu355Arg	p.L355R	ENST00000282397	NM_002019.4	355	cTc/cGc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95595863	95595863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	75	328	0	ENST00000343455.3:c.680A>G	p.Glu227Gly	p.E227G	ENST00000343455	NM_177438.2	227	gAg/gGg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843432	3843432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	95	366	0	ENST00000262367.5:c.1171G>A	p.Val391Ile	p.V391I	ENST00000262367	NM_004380.2	391	Gtt/Att																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858671	9858671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	123	480	0	ENST00000330684.3:c.2730G>A	p.Met910Ile	p.M910I	ENST00000330684	NM_001134407.1	910	atG/atA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828473	72828473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	159	658	0	ENST00000268489.5:c.8108C>T	p.Ala2703Val	p.A2703V	ENST00000268489	NM_006885.3	2703	gCt/gTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993824	72993824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	126	619	0	ENST00000268489.5:c.221C>T	p.Pro74Leu	p.P74L	ENST00000268489	NM_006885.3	74	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29559104	29559104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	67	164	0	ENST00000358273.4:c.3211G>A	p.Ala1071Thr	p.A1071T	ENST00000358273	NM_001042492.2	1071	Gca/Aca																																																																														
SPOP	8405	MSKCC	GRCh37	17	47677781	47677781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	122	533	0	ENST00000347630.2:c.1084C>T	p.Pro362Ser	p.P362S	ENST00000347630	NM_001007230.1	362	Cct/Tct																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221035	5221035	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	113	563	0	ENST00000357368.4:c.3431A>T	p.Asp1144Val	p.D1144V	ENST00000357368	NM_002850.3	1144	gAc/gTc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14629023	14629023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	203	647	0	ENST00000254322.2:c.139G>A	p.Glu47Lys	p.E47K	ENST00000254322	NM_006145.1	47	Gag/Aag																																																																														
CIC	23152	MSKCC	GRCh37	19	42792064	42792064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	176	716	0	ENST00000575354.2:c.868G>A	p.Gly290Arg	p.G290R	ENST00000575354	NM_015125.3	290	Gga/Aga																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45858937	45858937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	158	617	0	ENST00000391945.4:c.1529C>T	p.Thr510Ile	p.T510I	ENST00000391945	NM_000400.3	510	aCc/aTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085717	16085717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	109	572	0	ENST00000281043.3:c.893C>T	p.Thr298Ile	p.T298I	ENST00000281043	NM_005378.4	298	aCc/aTc																																																																														
ALK	238	MSKCC	GRCh37	2	29416394	29416394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	308	665	2	ENST00000389048.3:c.4559A>T	p.Asn1520Ile	p.N1520I	ENST00000389048	NM_004304.4	1520	aAt/aTt																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044279	128044279	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	113	432	0	ENST00000285398.2:c.1342G>A	p.Ala448Thr	p.A448T	ENST00000285398	NM_000122.1	448	Gcc/Acc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872680	136872680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	117	392	0	ENST00000241393.3:c.818G>A	p.Gly273Glu	p.G273E	ENST00000241393	NM_003467.2	273	gGg/gAg																																																																														
PAK7	0	MSKCC	GRCh37	20	9543614	9543614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	105	478	0	ENST00000353224.5:c.1540C>T	p.Leu514Phe	p.L514F	ENST00000353224	NM_177990.2	514	Ctt/Ttt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019225	31019225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	123	466	0	ENST00000375687.4:c.820C>T	p.His274Tyr	p.H274Y	ENST00000375687	NM_015338.5	274	Cat/Tat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743910	40743910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	113	475	1	ENST00000373198.4:c.3085G>A	p.Asp1029Asn	p.D1029N	ENST00000373198	NM_133170.3	1029	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306537	41306538	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	85	507	0	ENST00000373198.4:c.1121_1122delinsAA	p.Gly374Glu	p.G374E	ENST00000373198	NM_133170.3	374	gGG/gAA																																																																														
RAF1	5894	MSKCC	GRCh37	3	12647706	12647706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	63	256	0	ENST00000251849.4:c.674C>T	p.Pro225Leu	p.P225L	ENST00000251849	NM_002880.3	225	cCt/cTt																																																																														
BCL6	604	MSKCC	GRCh37	3	187447808	187447808	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	79	345	0	ENST00000232014.4:c.385G>A	p.Glu129Lys	p.E129K	ENST00000232014	NM_001130845.1	129	Gaa/Aaa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149499604	149499604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	111	484	0	ENST00000261799.4:c.2669G>A	p.Gly890Glu	p.G890E	ENST00000261799	NM_002609.3	890	gGg/gAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94124453	94124453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	71	328	0	ENST00000369303.4:c.130G>A	p.Glu44Lys	p.E44K	ENST00000369303	NM_004440.3	44	Gag/Aag																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536144	106536144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	93	311	0	ENST00000369096.4:c.111G>A	p.Met37Ile	p.M37I	ENST00000369096	NM_001198.3	37	atG/atA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678976	117678976	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138034064		P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	62	241	0	ENST00000368508.3:c.3845C>T	p.Pro1282Leu	p.P1282L	ENST00000368508	NM_002944.2	1282	cCt/cTt																																																																														
HGF	3082	MSKCC	GRCh37	7	81335070	81335070	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	64	215	0	ENST00000222390.5:c.1758-1G>A		p.X586_splice	ENST00000222390	NM_000601.4	586																																																																															
MET	4233	MSKCC	GRCh37	7	116398646	116398646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	66	312	0	ENST00000397752.3:c.2236G>A	p.Glu746Lys	p.E746K	ENST00000397752	NM_000245.2	746	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968116	68968116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	73	383	0	ENST00000288368.4:c.1145G>A	p.Gly382Asp	p.G382D	ENST00000288368	NM_024870.2	382	gGt/gAt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981837	70981837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	153	828	0	ENST00000276594.2:c.259G>A	p.Glu87Lys	p.E87K	ENST00000276594	NM_024504.3	87	Gag/Aag																																																																														
NBN	4683	MSKCC	GRCh37	8	90994956	90994957	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	47	233	0	ENST00000265433.3:c.164_165delinsTT	p.Thr55Ile	p.T55I	ENST00000265433	NM_002485.4	55	aCC/aTT																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864256	117864257	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	114	364	2	ENST00000297338.2:c.1400_1401delinsTA	p.Ala467Val	p.A467V	ENST00000297338	NM_006265.2	467	gCT/gTA																																																																														
SYK	6850	MSKCC	GRCh37	9	93640031	93640031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	85	357	0	ENST00000375746.1:c.1360G>A	p.Gly454Ser	p.G454S	ENST00000375746	NM_001174167.1	454	Ggt/Agt																																																																														
ABL1	25	MSKCC	GRCh37	9	133760895	133760895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	175	734	0	ENST00000318560.5:c.3218C>T	p.Ser1073Phe	p.S1073F	ENST00000318560	NM_005157.4	1073	tCc/tTc																																																																														
AR	367	MSKCC	GRCh37	X	66765395	66765395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	197	393	0	ENST00000374690.3:c.407G>A	p.Gly136Glu	p.G136E	ENST00000374690	NM_000044.3	136	gGa/gAa																																																																														
BTK	695	MSKCC	GRCh37	X	100629547	100629547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	128	232	0	ENST00000308731.7:c.217C>T	p.Pro73Ser	p.P73S	ENST00000308731	NM_000061.2	73	Cct/Tct																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504150	123504150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	100	189	0	ENST00000371139.4:c.326G>A	p.Arg109Lys	p.R109K	ENST00000371139	NM_001114937.2	109	aGa/aAa																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	144	590	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	60	216	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	60	196	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	172	628	0	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	59	168	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	77	272	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	58	183	0	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
MGA	23269	MSKCC	GRCh37	15	42042483	42042483	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	97	368	0	ENST00000219905.7:c.6682delA	p.Ser2228ValfsTer10	p.S2228Vfs*10	ENST00000219905	NM_001164273.1	2226	ggA/gg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	193	463	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860604	45860604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	226	705	0	ENST00000391945.4:c.1403C>A	p.Pro468His	p.P468H	ENST00000391945	NM_000400.3	468	cCc/cAc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561424	9561424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	102	355	0	ENST00000353224.5:c.358G>A	p.Ala120Thr	p.A120T	ENST00000353224	NM_177990.2	120	Gcg/Acg																																																																														
MGA	23269	MSKCC	GRCh37	15	42054541	42054541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	105	288	0	ENST00000219905.7:c.7731delA	p.Asp2578ThrfsTer10	p.D2578Tfs*10	ENST00000219905	NM_001164273.1	2575	agA/ag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438211	49438211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	146	416	2	ENST00000301067.7:c.5058delA	p.Lys1686AsnfsTer36	p.K1686Nfs*36	ENST00000301067	NM_003482.3	1686	aaA/aa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	82	318	0	ENST00000412585.2:c.626dupC	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	155	667	2	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45858047	45858047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142568756		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	178	595	0	ENST00000391945.4:c.1606G>A	p.Val536Met	p.V536M	ENST00000391945	NM_000400.3	536	Gtg/Atg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998164	169998165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	119	352	0	ENST00000295797.4:c.861dup	p.Glu288ArgfsTer4	p.E288Rfs*4	ENST00000295797	NM_002740.5	285	-/A																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250430	26250431	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs778901635		P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	112	405	0	ENST00000446824.2:c.403_404del	p.Arg135GlyfsTer?	p.R135Gfs*?	ENST00000446824	NM_021018.2	135	AGg/g																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323253	31323253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	98	279	0	ENST00000412585.2:c.736G>A	p.Glu246Lys	p.E246K	ENST00000412585	NM_005514.6	246	Gag/Aag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976953	18976953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	119	441	0	ENST00000262803.5:c.3338C>T	p.Thr1113Met	p.T1113M	ENST00000262803	NM_002911.3	1113	aCg/aTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796340	42796340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	250	638	1	ENST00000575354.2:c.2989C>A	p.Leu997Met	p.L997M	ENST00000575354	NM_015125.3	997	Ctg/Atg																																																																														
PGR	5241	MSKCC	GRCh37	11	100999153	100999153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	142	656	2	ENST00000325455.5:c.649G>A	p.Ala217Thr	p.A217T	ENST00000325455	NM_001202474.3	217	Gct/Act																																																																														
CBL	867	MSKCC	GRCh37	11	119156139	119156140	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	159	455	0	ENST00000264033.4:c.1808dup	p.Ser604LysfsTer4	p.S604Kfs*4	ENST00000264033	NM_005188.3	602	gcc/gCcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446370	49446371	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	168	497	0	ENST00000301067.7:c.1234_1235insA	p.Leu412HisfsTer4	p.L412Hfs*4	ENST00000301067	NM_003482.3	412	ctg/cAtg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81934321	81934321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	202	534	1	ENST00000359376.3:c.1298C>A	p.Pro433His	p.P433H	ENST00000359376	NM_002661.3	433	cCc/cAc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39609350	39609350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	87	253	0	ENST00000262039.4:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000262039	NM_002647.2	551	cGg/cAg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626032	12626032	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	120	355	0	ENST00000251849.4:c.1928del	p.Pro643ArgfsTer8	p.P643Rfs*8	ENST00000251849	NM_002880.3	643	cCg/cg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437234	52437234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	201	552	0	ENST00000460680.1:c.1810G>A	p.Val604Met	p.V604M	ENST00000460680	NM_004656.3	604	Gtg/Atg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72873689	72873690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	112	236	0	ENST00000325599.8:c.612dup	p.Glu205Ter	p.E205*	ENST00000325599	NM_018130.2	204	-/T																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911050	29911051	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	257	842	0	ENST00000376809.5:c.352_353del	p.Thr118HisfsTer58	p.T118Hfs*58	ENST00000376809	NM_002116.7	117	CAc/c																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528718	157528718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	111	404	1	ENST00000346085.5:c.6443C>T	p.Ala2148Val	p.A2148V	ENST00000346085	NM_020732.3	2148	gCc/gTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860428	151860428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	141	394	0	ENST00000262189.6:c.10234C>T	p.Arg3412Trp	p.R3412W	ENST00000262189	NM_170606.2	3412	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884485	151884485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	82	264	0	ENST00000262189.6:c.4870G>T	p.Gly1624Ter	p.G1624*	ENST00000262189	NM_170606.2	1624	Gga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123181236	123181236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	29	193	0	ENST00000218089.9:c.700G>A	p.Ala234Thr	p.A234T	ENST00000218089	NM_001042749.1	234	Gca/Aca																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67575451	67575451	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	106	270	0	ENST00000274335.5:c.526del	p.Met176Ter	p.M176*	ENST00000274335		175	gAa/ga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711902	89711902	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	152	451	0	ENST00000371953.3:c.520T>A	p.Tyr174Asn	p.Y174N	ENST00000371953	NM_000314.4	174	Tat/Aat																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31395587	31395587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	118	677	1	ENST00000328111.2:c.2440C>T	p.His814Tyr	p.H814Y	ENST00000328111	NM_006892.3	814	Cac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112177121	112177121	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	106	346	0	ENST00000257430.4:c.5833delG	p.Ala1945GlnfsTer25	p.A1945Qfs*25	ENST00000257430	NM_000038.5	1944	Ggg/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	125	476	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106156069	106156069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	73	338	0	ENST00000380013.4:c.970C>T	p.Gln324Ter	p.Q324*	ENST00000380013	NM_001127208.2	324	Caa/Taa																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735585	204735585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	121	418	1	ENST00000302823.3:c.386G>T	p.Cys129Phe	p.C129F	ENST00000302823	NM_005214.4	129	tGc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112173302	112173303	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0049602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	51	241	0	ENST00000257430.4:c.2013_2014del	p.His672Ter	p.H672*	ENST00000257430	NM_000038.5	671	TCt/t																																																																														
EZH2	2146	MSKCC	GRCh37	7	148524343	148524343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	29	323	1	ENST00000320356.2:c.641C>T	p.Pro214Leu	p.P214L	ENST00000320356	NM_004456.4	214	cCa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	93	679	2	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	59	472	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	72	442	1	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	72	442	1	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	72	442	1	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439922	51439922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	31	186	0	ENST00000262662.1:c.487G>A	p.Gly163Arg	p.G163R	ENST00000262662		163	Gga/Aga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106424	27106424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	73	444	0	ENST00000324856.7:c.6035G>A	p.Gly2012Asp	p.G2012D	ENST00000324856	NM_006015.4	2012	gGc/gAc																																																																														
STK11	6794	MSKCC	GRCh37	19	1222986	1222986	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	62	519	0	ENST00000326873.7:c.923G>C	p.Trp308Ser	p.W308S	ENST00000326873	NM_000455.4	308	tGg/tCg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906310	50906310	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	62	627	0	ENST00000440232.2:c.971G>T	p.Gly324Val	p.G324V	ENST00000440232	NM_002691.3	324	gGc/gTc																																																																														
ALK	238	MSKCC	GRCh37	2	29416373	29416373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	93	609	0	ENST00000389048.3:c.4580C>T	p.Pro1527Leu	p.P1527L	ENST00000389048	NM_004304.4	1527	cCa/cTa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158594996	158594996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	64	273	0	ENST00000263640.3:c.1351G>C	p.Asp451His	p.D451H	ENST00000263640	NM_001105.4	451	Gat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927456	178927456	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	48	269	0	ENST00000263967.3:c.1219T>C	p.Cys407Arg	p.C407R	ENST00000263967	NM_006218.2	407	Tgc/Cgc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912172	29912172	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	75	286	0	ENST00000376809.5:c.893G>A	p.Trp298Ter	p.W298*	ENST00000376809	NM_002116.7	298	tGg/tAg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932020	39932020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	46	573	0	ENST00000378444.4:c.2579G>T	p.Gly860Val	p.G860V	ENST00000378444	NM_001123385.1	860	gGg/gTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034487	47034487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	79	521	0	ENST00000329236.7:c.341A>G	p.Asn114Ser	p.N114S	ENST00000329236	NM_001204466.1	114	aAt/aGt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410589	63410589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	44	619	1	ENST00000330258.3:c.2578C>A	p.Gln860Lys	p.Q860K	ENST00000330258	NM_152424.3	860	Caa/Aaa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411918	63411918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	47	668	0	ENST00000330258.3:c.1249C>G	p.Pro417Ala	p.P417A	ENST00000330258	NM_152424.3	417	Cca/Gca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518361	8518363	+	missense_variant	Missense_Mutation	ONP	CCC	CCC	ACA			P-0049603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	19	193	0	ENST00000356435.5:c.1028_1030delinsTGT	p.Trp343_Asp344delinsLeuTyr	p.W343_D344delinsLY	ENST00000356435		343	tGGGac/tTGTac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	212	239	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0049606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	195	555	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
BCL6	604	MSKCC	GRCh37	3	187451474	187451474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145456310		P-0049606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	158	313	0	ENST00000232014.4:c.8C>T	p.Ser3Leu	p.S3L	ENST00000232014	NM_001130845.1	3	tCg/tTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	107	295	0	ENST00000371953.3:c.511C>G	p.Gln171Glu	p.Q171E	ENST00000371953	NM_000314.4	171	Cag/Gag																																																																														
MED12	9968	MSKCC	GRCh37	X	70338650	70338650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	263	539	3	ENST00000374080.3:c.46C>T	p.Arg16Trp	p.R16W	ENST00000374080		16	Cgg/Tgg																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165914	118165914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	141	292	0	ENST00000369448.3:c.424C>G	p.Leu142Val	p.L142V	ENST00000369448	NM_017709.3	142	Cta/Gta																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980316	201980317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0049606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	338	638	0	ENST00000359651.3:c.54_55dup	p.Tyr19CysfsTer25	p.Y19Cfs*25	ENST00000359651		18	atg/aTGtg																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56770075	56770075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	216	492	0	ENST00000337432.4:c.73del	p.Val25Ter	p.V25*	ENST00000337432	NM_058216.2	24	cGg/cg																																																																														
YES1	7525	MSKCC	GRCh37	18	756691	756691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	184	395	0	ENST00000314574.4:c.137C>T	p.Ser46Leu	p.S46L	ENST00000314574	NM_005433.3	46	tCa/tTa																																																																														
MST1	4485	MSKCC	GRCh37	3	49722934	49722934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	46	324	0	ENST00000449682.2:c.1393G>A	p.Asp465Asn	p.D465N	ENST00000449682	NM_020998.3	465	Gac/Aac																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430215	181430215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	185	328	0	ENST00000325404.1:c.67G>A	p.Gly23Ser	p.G23S	ENST00000325404	NM_003106.3	23	Ggc/Agc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44910900	44910970	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTTCCTTAAAGATTATGTTAATTTTTCTCCAAATCTCTTTTTCTGTTCTTTAGAGGAAATATCATTCTGC	AGTTCCTTAAAGATTATGTTAATTTTTCTCCAAATCTCTTTTTCTGTTCTTTAGAGGAAATATCATTCTGC	-			P-0049606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	81	140	0	ENST00000377967.4:c.655-53_672del		p.X219_splice	ENST00000377967	NM_021140.2	219																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	31	510	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
MED12	9968	MSKCC	GRCh37	X	70354226	70354226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	60	341	2	ENST00000374080.3:c.4637C>T	p.Thr1546Met	p.T1546M	ENST00000374080		1546	aCg/aTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs80357522		P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	23	468	1	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	23	405	0	ENST00000347630.2:c.373T>G	p.Phe125Val	p.F125V	ENST00000347630	NM_001007230.1	125	Ttt/Gtt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3642785	3642785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	61	774	0	ENST00000294008.3:c.2242G>A	p.Ala748Thr	p.A748T	ENST00000294008	NM_032444.2	748	Gcc/Acc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	48	900	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434005	49434005	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	34	859	1	ENST00000301067.7:c.7548del	p.Asn2517IlefsTer26	p.N2517Ifs*26	ENST00000301067	NM_003482.3	2516	ccC/cc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458306	120458306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	30	675	0	ENST00000256646.2:c.7039C>T	p.Arg2347Cys	p.R2347C	ENST00000256646	NM_024408.3	2347	Cgt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272146	15272146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	53	861	3	ENST00000263388.2:c.6293C>T	p.Thr2098Met	p.T2098M	ENST00000263388	NM_000435.2	2098	aCg/aTg																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798133	45798133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	58	801	0	ENST00000372115.3:c.676G>A	p.Ala226Thr	p.A226T	ENST00000372115	NM_001048171.1	226	Gca/Aca																																																																														
TET1	80312	MSKCC	GRCh37	10	70406295	70406295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	24	470	0	ENST00000373644.4:c.3809C>T	p.Thr1270Met	p.T1270M	ENST00000373644	NM_030625.2	1270	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431648	49431648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	46	838	0	ENST00000301067.7:c.9491G>A	p.Arg3164Gln	p.R3164Q	ENST00000301067	NM_003482.3	3164	cGg/cAg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713238	43713238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	71	756	0	ENST00000382044.4:c.4235G>A	p.Arg1412Gln	p.R1412Q	ENST00000382044	NM_001141980.1	1412	cGg/cAg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347758	347758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	41	904	1	ENST00000262320.3:c.1748G>T	p.Gly583Val	p.G583V	ENST00000262320	NM_003502.3	583	gGc/gTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831718	72831718	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	32	572	0	ENST00000268489.5:c.4863A>C	p.Gln1621His	p.Q1621H	ENST00000268489	NM_006885.3	1621	caA/caC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845816	72845838	+	frameshift_variant	Frame_Shift_Del	DEL	GATCTCCTCAGCTGTTTTTGGTC	GATCTCCTCAGCTGTTTTTGGTC	-			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	33	536	1	ENST00000268489.5:c.3629_3651del	p.Arg1210GlnfsTer15	p.R1210Qfs*15	ENST00000268489	NM_006885.3	1210	cGACCAAAAACAGCTGAGGAGATC/c																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78933980	78933980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	28	704	0	ENST00000306801.3:c.3580G>A	p.Asp1194Asn	p.D1194N	ENST00000306801	NM_020761.2	1194	Gac/Aac																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313353	30313353	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	23	489	0	ENST00000262643.3:c.953G>A	p.Gly318Glu	p.G318E	ENST00000262643	NM_001238.2	318	gGg/gAg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264164	46264164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	16	278	0	ENST00000371998.3:c.1211C>T	p.Ser404Leu	p.S404L	ENST00000371998		404	tCg/tTg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190938	185190938	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	56	710	0	ENST00000265026.3:c.1823del	p.Asn608ThrfsTer56	p.N608Tfs*56	ENST00000265026	NM_004721.4	607	Aaa/aa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873395	151873397	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0049607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	11	286	0	ENST00000262189.6:c.9141_9143del	p.Leu3048del	p.L3048del	ENST00000262189	NM_170606.2	3047	ctTCTa/cta																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0049609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	74	279	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692886	89692886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	79	288	0	ENST00000371953.3:c.370T>A	p.Cys124Ser	p.C124S	ENST00000371953	NM_000314.4	124	Tgt/Agt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371799	55371820	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCGCGCTGGGCCCCGAG	GGCGGCCGCGCTGGGCCCCGAG	-			P-0049609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	139	238	0	ENST00000297316.4:c.499_520del	p.Leu167TrpfsTer213	p.L167Wfs*213	ENST00000297316	NM_022454.3	163	caGGCGGCCGCGCTGGGCCCCGAG/ca																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696597	47696597	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	107	384	0	ENST00000347630.2:c.351G>A	p.Met117Ile	p.M117I	ENST00000347630	NM_001007230.1	117	atG/atA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685304	89685320	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATATACAATCTGTAAGT	ATATACAATCTGTAAGT	-			P-0049609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	38	234	0	ENST00000371953.3:c.201_209+8del		p.X67_splice	ENST00000371953	NM_000314.4	67																																																																															
AXIN1	8312	MSKCC	GRCh37	16	396567	396568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	363	631	0	ENST00000262320.3:c.458dup	p.Asn153LysfsTer31	p.N153Kfs*31	ENST00000262320	NM_003502.3	153	aat/aaAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29559167	29559167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	97	349	0	ENST00000358273.4:c.3274G>A	p.Gly1092Ser	p.G1092S	ENST00000358273	NM_001042492.2	1092	Ggt/Agt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807188	1807188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	229	842	6	ENST00000260795.2:c.1519G>A	p.Val507Met	p.V507M	ENST00000260795		507	Gtg/Atg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046368	69046368	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	142	478	0	ENST00000288368.4:c.3841C>T	p.Gln1281Ter	p.Q1281*	ENST00000288368	NM_024870.2	1281	Cag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591133	67591136	+	protein_altering_variant	In_Frame_Del	DEL	ACGA	ACGA	G			P-0049609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	75	272	0	ENST00000274335.5:c.1726_1729delinsG	p.Thr576_Arg577delinsGly	p.T576_R577delinsG	ENST00000274335		576	ACGAga/Gga																																																																														
RHOA	387	MSKCC	GRCh37	3	49412884	49412884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	368	540	2	ENST00000418115.1:c.139G>A	p.Glu47Lys	p.E47K	ENST00000418115	NM_001664.2	47	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	474	679	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692953	89692953	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	215	482	0	ENST00000371953.3:c.437T>A	p.Leu146Ter	p.L146*	ENST00000371953	NM_000314.4	146	tTa/tAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169116	32169116	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	619	751	3	ENST00000375023.3:c.3917delC	p.Pro1306GlnfsTer3	p.P1306Qfs*3	ENST00000375023	NM_004557.3	1306	cCa/ca																																																																														
PAK7	0	MSKCC	GRCh37	20	9546787	9546787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	384	428	0	ENST00000353224.5:c.1235C>T	p.Pro412Leu	p.P412L	ENST00000353224	NM_177990.2	412	cCg/cTg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651584	206651584	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	604	760	0	ENST00000367120.3:c.894C>G	p.Phe298Leu	p.F298L	ENST00000367120	NM_014002.3	298	ttC/ttG																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562950	21562950	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	691	808	0	ENST00000382592.4:c.969del	p.Ala324ArgfsTer109	p.A324Rfs*109	ENST00000382592	NM_014572.2	323	ccC/cc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121873	2121873	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	775	969	0	ENST00000219476.3:c.2035G>C	p.Val679Leu	p.V679L	ENST00000219476	NM_000548.3	679	Gtg/Ctg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505582	25505582	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	540	655	0	ENST00000264709.3:c.178-2A>T		p.X60_splice	ENST00000264709	NM_175629.2	60																																																																															
XPO1	7514	MSKCC	GRCh37	2	61711073	61711074	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CG	CG	GC			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	124	325	1	ENST00000401558.2:c.2675_2676delinsGC	p.Thr892Ser	p.T892S	ENST00000401558	NM_003400.3	892	aCG/aGC																																																																														
PAK7	0	MSKCC	GRCh37	20	9561205	9561205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	305	441	0	ENST00000353224.5:c.577G>T	p.Ala193Ser	p.A193S	ENST00000353224	NM_177990.2	193	Gcc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112177805	112177805	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	151	259	0	ENST00000257430.4:c.6514G>T	p.Glu2172Ter	p.E2172*	ENST00000257430	NM_000038.5	2172	Gag/Tag																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149433755	149433755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	590	759	0	ENST00000286301.3:c.2796C>A	p.Ser932Arg	p.S932R	ENST00000286301	NM_005211.3	932	agC/agA																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045788	180045788	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	550	737	0	ENST00000261937.6:c.2983del	p.Ala995LeufsTer12	p.A995Lfs*12	ENST00000261937	NM_182925.4	995	Gct/ct																																																																														
MET	4233	MSKCC	GRCh37	7	116411719	116411719	+	intron_variant	Intron	SNP	G	G	C			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	333	694	0	ENST00000397752.3:c.2887+11G>C		p.*963*	ENST00000397752	NM_000245.2																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139395183	139395183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	790	939	0	ENST00000277541.6:c.5755A>G	p.Ser1919Gly	p.S1919G	ENST00000277541	NM_017617.3	1919	Agc/Ggc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921494	39921494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1305	431	727	0	ENST00000378444.4:c.4326G>T	p.Glu1442Asp	p.E1442D	ENST00000378444	NM_001123385.1	1442	gaG/gaT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217322	123217323	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0049611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	160	468	0	ENST00000218089.9:c.2976_2977delinsAT	p.His992_Pro993delinsGlnSer	p.H992_P993delinsQS	ENST00000218089	NM_001042749.1	992	caTCca/caATca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	119	357	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	304	690	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970899	21970899	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0049612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	329	677	0	ENST00000304494.5:c.457+2T>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970899	21970899	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0049612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	329	677	0	ENST00000304494.5:c.457+2T>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970899	21970899	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0049612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	329	677	0	ENST00000304494.5:c.457+2T>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604791	48604798	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTACTT	AAGTACTT	G			P-0049612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	107	306	0	ENST00000342988.3:c.1613_1620delinsG	p.Glu538GlyfsTer12	p.E538Gfs*12	ENST00000342988	NM_005359.5	538	gAAGTACTT/gG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	368	592	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858298	9858298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	112	361	0	ENST00000330684.3:c.3103G>A	p.Asp1035Asn	p.D1035N	ENST00000330684	NM_001134407.1	1035	Gat/Aat																																																																														
RET	5979	MSKCC	GRCh37	10	43610076	43610076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	189	673	2	ENST00000355710.3:c.2028C>A	p.Phe676Leu	p.F676L	ENST00000355710	NM_020975.4	676	ttC/ttA																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811652	102811652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	189	620	1	ENST00000307046.8:c.532C>A	p.Gln178Lys	p.Q178K	ENST00000307046	NM_001111285.1	178	Cag/Aag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3656701	3656701	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	204	577	0	ENST00000294008.3:c.536-2A>T		p.X179_splice	ENST00000294008	NM_032444.2	179																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72829870	72829870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	221	575	0	ENST00000268489.5:c.6711G>C	p.Glu2237Asp	p.E2237D	ENST00000268489	NM_006885.3	2237	gaG/gaC																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872587	37872587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	248	686	1	ENST00000269571.5:c.1547C>T	p.Ala516Val	p.A516V	ENST00000269571		516	gCc/gTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55561855	55561855	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	81	311	0	ENST00000288135.5:c.245G>A	p.Trp82Ter	p.W82*	ENST00000288135	NM_000222.2	82	tGg/tAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280008	66280008	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	43	187	0	ENST00000273854.3:c.1681C>G	p.Pro561Ala	p.P561A	ENST00000273854	NM_004439.5	561	Cca/Gca																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981584	70981584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	264	885	0	ENST00000276594.2:c.512C>G	p.Pro171Arg	p.P171R	ENST00000276594	NM_024504.3	171	cCt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	20	399	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	36	639	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	30	211	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	43	357	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	117	437	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0049672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	86	567	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
ATM	472	MSKCC	GRCh37	11	108124717	108124717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	22	347	0	ENST00000278616.4:c.2075G>A	p.Arg692His	p.R692H	ENST00000278616	NM_000051.3	692	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941004	71941004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	89	880	0	ENST00000298229.2:c.884delC	p.Pro295GlnfsTer20	p.P295Qfs*20	ENST00000298229	NM_001567.3	294	Ccc/cc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	85	906	0	ENST00000227507.2:c.859C>A	p.Pro287Thr	p.P287T	ENST00000227507	NM_053056.2	287	Ccc/Acc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098803	178098803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	62	571	0	ENST00000397062.3:c.242G>T	p.Gly81Val	p.G81V	ENST00000397062	NM_006164.4	81	gGt/gTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868268	37868268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	98	676	2	ENST00000269571.5:c.989G>A	p.Arg330Gln	p.R330Q	ENST00000269571		330	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100846	27100847	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0049672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	61	585	0	ENST00000324856.7:c.4130_4131del	p.Tyr1377TrpfsTer67	p.Y1377Wfs*67	ENST00000324856	NM_006015.4	1376	acATat/acat																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939298	71939298	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	73	907	0	ENST00000298229.2:c.246+1G>A		p.X82_splice	ENST00000298229	NM_001567.3	82																																																																															
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	75	594	0	ENST00000269305.4:c.695T>C	p.Ile232Thr	p.I232T	ENST00000269305	NM_001126112.2	232	aTc/aCc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484233	8484233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	220	501	0	ENST00000356435.5:c.3299C>A	p.Thr1100Lys	p.T1100K	ENST00000356435		1100	aCg/aAg																																																																														
MSI2	124540	MSKCC	GRCh37	17	55704641	55704641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	72	741	0	ENST00000284073.2:c.704C>T	p.Pro235Leu	p.P235L	ENST00000284073	NM_138962.2	235	cCa/cTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29684286	29684286	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	220	343	0	ENST00000358273.4:c.7870-1G>T		p.X2624_splice	ENST00000358273	NM_001042492.2	2624																																																																															
NF1	4763	MSKCC	GRCh37	17	29665042	29665042	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	154	362	0	ENST00000358273.4:c.6705-1G>A		p.X2235_splice	ENST00000358273	NM_001042492.2	2235																																																																															
PGR	5241	MSKCC	GRCh37	11	100933447	100933447	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	61	287	0	ENST00000325455.5:c.1943T>A	p.Val648Glu	p.V648E	ENST00000325455	NM_001202474.3	648	gTg/gAg																																																																														
ATM	472	MSKCC	GRCh37	11	108163474	108163474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	112	412	0	ENST00000278616.4:c.4565G>T	p.Gly1522Val	p.G1522V	ENST00000278616	NM_000051.3	1522	gGt/gTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433887	49433887	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	121	1025	0	ENST00000301067.7:c.7666C>G	p.Leu2556Val	p.L2556V	ENST00000301067	NM_003482.3	2556	Ctc/Gtc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433976	49433976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	113	915	1	ENST00000301067.7:c.7577C>T	p.Ala2526Val	p.A2526V	ENST00000301067	NM_003482.3	2526	gCa/gTa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637633	52637633	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	232	459	0	ENST00000394830.3:c.2683A>G	p.Thr895Ala	p.T895A	ENST00000394830	NM_018313.4	895	Aca/Gca																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143029317	143029317	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	32	204	0	ENST00000262992.4:c.2303G>C	p.Ser768Thr	p.S768T	ENST00000262992	NM_001101669.1	768	aGt/aCt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628932	187628932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	194	595	0	ENST00000441802.2:c.2050G>T	p.Ala684Ser	p.A684S	ENST00000441802	NM_005245.3	684	Gca/Tca																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523681	176523681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	307	908	1	ENST00000292408.4:c.2092C>A	p.Leu698Met	p.L698M	ENST00000292408	NM_213647.1	698	Ctg/Atg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468255	50468255	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	200	660	0	ENST00000331340.3:c.1490A>T	p.Tyr497Phe	p.Y497F	ENST00000331340	NM_006060.4	497	tAc/tTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376651	8376651	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	236	454	0	ENST00000356435.5:c.4462G>T	p.Val1488Leu	p.V1488L	ENST00000356435		1488	Gtg/Ttg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504332	8504332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	218	520	1	ENST00000356435.5:c.1751G>T	p.Arg584Leu	p.R584L	ENST00000356435		584	cGt/cTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39937131	39937131	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	95	814	0	ENST00000378444.4:c.52G>T	p.Glu18Ter	p.E18*	ENST00000378444	NM_001123385.1	18	Gag/Tag																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504139	123504139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	44	375	0	ENST00000371139.4:c.315G>T	p.Lys105Asn	p.K105N	ENST00000371139	NM_001114937.2	105	aaG/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	89	319	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0049678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	181	709	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36938263	36938263	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138558210		P-0049678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	250	893	0	ENST00000361632.4:c.698G>A	p.Arg233Gln	p.R233Q	ENST00000361632		233	cGg/cAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581279	48581280	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0049678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	134	469	0	ENST00000342988.3:c.584dup	p.Tyr195Ter	p.Y195*	ENST00000342988	NM_005359.5	195	tac/tAac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106242	27106250	+	frameshift_variant	Frame_Shift_Del	DEL	CATCAAGAT	CATCAAGAT	A			P-0049678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	109	553	0	ENST00000324856.7:c.5853_5861delinsA	p.Asn1951LysfsTer9	p.N1951Kfs*9	ENST00000324856	NM_006015.4	1951	aaCATCAAGATc/aaAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	183	427	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	304	641	1	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604706	48604706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	248	420	0	ENST00000342988.3:c.1528G>A	p.Gly510Arg	p.G510R	ENST00000342988	NM_005359.5	510	Gga/Aga																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783217	9783217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140820694		P-0049679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	335	681	2	ENST00000377346.4:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000377346	NM_005026.3	821	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0049679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	291	868	1	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	49	585	4	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	22	590	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	57	838	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	39	591	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	15	528	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	43	596	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	69	848	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31369176	31369176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	53	611	0	ENST00000328111.2:c.160C>T	p.Arg54Ter	p.R54*	ENST00000328111	NM_006892.3	54	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	51	729	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	66	860	6	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993849	72993849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	45	615	1	ENST00000268489.5:c.196G>A	p.Ala66Thr	p.A66T	ENST00000268489	NM_006885.3	66	Gcg/Acg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627257	86627257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	24	385	0	ENST00000274376.6:c.632G>A	p.Arg211Gln	p.R211Q	ENST00000274376	NM_002890.2	211	cGg/cAg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371799	55371820	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCGCGCTGGGCCCCGAG	GGCGGCCGCGCTGGGCCCCGAG	-			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	12	152	0	ENST00000297316.4:c.499_520del	p.Leu167TrpfsTer213	p.L167Wfs*213	ENST00000297316	NM_022454.3	163	caGGCGGCCGCGCTGGGCCCCGAG/ca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340356	8340356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	46	556	0	ENST00000356435.5:c.5240G>A	p.Arg1747His	p.R1747H	ENST00000356435		1747	cGt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	63	915	5	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902297	50902297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	57	925	0	ENST00000440232.2:c.193del	p.Val65LeufsTer11	p.V65Lfs*11	ENST00000440232	NM_002691.3	63	gaG/ga																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484048	50484048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	45	669	2	ENST00000394963.4:c.898C>T	p.Arg300Cys	p.R300C	ENST00000394963	NM_003076.4	300	Cgc/Tgc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693886	47693886	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	59	429	0	ENST00000233146.2:c.1600del	p.Arg534ValfsTer9	p.R534Vfs*9	ENST00000233146	NM_000251.2	534	Cgt/gt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885299	111885299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200936167		P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	45	645	0	ENST00000341259.2:c.1187C>T	p.Thr396Met	p.T396M	ENST00000341259	NM_005475.2	396	aCg/aTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16056679	16056680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	29	446	0	ENST00000268712.3:c.762dup	p.Glu255Ter	p.E255*	ENST00000268712	NM_006311.3	254	-/T																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836396	89836396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	42	665	0	ENST00000389301.3:c.2353G>T	p.Ala785Ser	p.A785S	ENST00000389301	NM_000135.2	785	Gct/Tct																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11168941	11168941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	38	544	2	ENST00000344626.4:c.4435C>T	p.Arg1479Cys	p.R1479C	ENST00000344626	NM_003072.3	1479	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	52	536	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220409	1220409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	98	854	1	ENST00000326873.7:c.502C>T	p.His168Tyr	p.H168Y	ENST00000326873	NM_000455.4	168	Cat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912277	32912277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	42	587	0	ENST00000380152.3:c.3785C>T	p.Ser1262Leu	p.S1262L	ENST00000380152		1262	tCa/tTa																																																																														
STK40	83931	MSKCC	GRCh37	1	36814313	36814313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	24	591	0	ENST00000373129.3:c.727G>T	p.Asp243Tyr	p.D243Y	ENST00000373129	NM_032017.1	243	Gac/Tac																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366828	40366828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	27	644	0	ENST00000397332.2:c.369C>A	p.Asp123Glu	p.D123E	ENST00000397332	NM_001033082.2	123	gaC/gaA																																																																														
FLT1	2321	MSKCC	GRCh37	13	28882982	28882982	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	66	499	0	ENST00000282397.4:c.3718G>T	p.Asp1240Tyr	p.D1240Y	ENST00000282397	NM_002019.4	1240	Gat/Tat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808018	3808018	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	35	450	1	ENST00000262367.5:c.3401A>G	p.Asp1134Gly	p.D1134G	ENST00000262367	NM_004380.2	1134	gAc/gGc																																																																														
RARA	5914	MSKCC	GRCh37	17	38508206	38508206	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	20	604	0	ENST00000254066.5:c.516del	p.Glu173SerfsTer8	p.E173Sfs*8	ENST00000254066	NM_000964.3	172	Ccc/cc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39550397	39550397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	40	313	0	ENST00000262039.4:c.508G>T	p.Asp170Tyr	p.D170Y	ENST00000262039	NM_002647.2	170	Gat/Tat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38942936	38942936	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	31	313	0	ENST00000357387.3:c.5051A>T	p.Gln1684Leu	p.Q1684L	ENST00000357387	NM_152756.3	1684	cAa/cTa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467847	50467847	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	35	633	0	ENST00000331340.3:c.1082C>G	p.Ser361Cys	p.S361C	ENST00000331340	NM_006060.4	361	tCc/tGc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508546	106508546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	30	510	0	ENST00000359195.3:c.540G>T	p.Leu180Phe	p.L180F	ENST00000359195	NM_002649.2	180	ttG/ttT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045688	47045689	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0049790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	48	861	0	ENST00000329236.7:c.2335_2336delinsT	p.Gly779SerfsTer29	p.G779Sfs*29	ENST00000329236	NM_001204466.1	779	GGc/Tc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	106	348	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27024029	27024029	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	52	150	0	ENST00000324856.7:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000324856	NM_006015.4	379	Cag/Tag																																																																														
FH	2271	MSKCC	GRCh37	1	241683007	241683007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	153	606	0	ENST00000366560.3:c.16C>T	p.Arg6Trp	p.R6W	ENST00000366560	NM_000143.3	6	Cgg/Tgg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118919	115118919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	74	348	0	ENST00000257566.3:c.422C>T	p.Ser141Phe	p.S141F	ENST00000257566	NM_016569.3	141	tCt/tTt																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518755	204518755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	194	426	0	ENST00000367182.3:c.1418C>T	p.Ser473Leu	p.S473L	ENST00000367182	NM_001278516.1	473	tCa/tTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751886972		P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	336	825	1	ENST00000373198.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000373198	NM_133170.3	413	gCg/gTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402040	402040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	256	567	0	ENST00000399788.2:c.4751G>A	p.Arg1584Lys	p.R1584K	ENST00000399788	NM_001042603.1	1584	aGa/aAa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942216	71942216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	367	655	0	ENST00000298229.2:c.1480G>T	p.Asp494Tyr	p.D494Y	ENST00000298229	NM_001567.3	494	Gat/Tat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211277	36211277	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200396386		P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	401	1066	0	ENST00000222270.7:c.1028G>A	p.Arg343Lys	p.R343K	ENST00000222270	NM_014727.1	343	aGa/aAa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31483733	31483733	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	24	251	0	ENST00000344624.3:c.1999C>T	p.Pro667Ser	p.P667S	ENST00000344624		667	Cct/Tct																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073487	8073487	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	488	535	0	ENST00000377482.5:c.1172C>G	p.Ser391Ter	p.S391*	ENST00000377482	NM_018948.3	391	tCa/tGa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489535	56489535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	329	686	1	ENST00000267101.3:c.2000G>T	p.Arg667Leu	p.R667L	ENST00000267101	NM_001982.3	667	cGt/cTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945102	151945102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	43	452	1	ENST00000262189.6:c.2417C>T	p.Ser806Phe	p.S806F	ENST00000262189	NM_170606.2	806	tCc/tTc																																																																														
CDH1	999	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	215	561	0	ENST00000261769.5:c.1565+1G>T		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106515182	106515182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	108	509	0	ENST00000359195.3:c.2325G>T	p.Gln775His	p.Q775H	ENST00000359195	NM_002649.2	775	caG/caT																																																																														
MLH1	4292	MSKCC	GRCh37	3	37035134	37035134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	194	502	0	ENST00000231790.2:c.96C>G	p.Ile32Met	p.I32M	ENST00000231790	NM_000249.3	32	atC/atG																																																																														
PGR	5241	MSKCC	GRCh37	11	100998441	100998441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	180	485	0	ENST00000325455.5:c.1361C>T	p.Ser454Leu	p.S454L	ENST00000325455	NM_001202474.3	454	tCg/tTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562427	95562427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	228	568	0	ENST00000343455.3:c.4830C>A	p.Phe1610Leu	p.F1610L	ENST00000343455	NM_177438.2	1610	ttC/ttA																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945355	71945355	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	358	825	0	ENST00000298229.2:c.2243T>C	p.Ile748Thr	p.I748T	ENST00000298229	NM_001567.3	748	aTt/aCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094419	27094419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	731	725	0	ENST00000324856.7:c.3127G>A	p.Ala1043Thr	p.A1043T	ENST00000324856	NM_006015.4	1043	Gct/Act																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105946	27105946	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	375	697	0	ENST00000324856.7:c.5557G>T	p.Glu1853Ter	p.E1853*	ENST00000324856	NM_006015.4	1853	Gag/Tag																																																																														
PARP1	142	MSKCC	GRCh37	1	226561948	226561948	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	180	564	0	ENST00000366794.5:c.2049G>C	p.Lys683Asn	p.K683N	ENST00000366794	NM_001618.3	683	aaG/aaC																																																																														
WT1	7490	MSKCC	GRCh37	11	32421573	32421573	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	93	684	0	ENST00000332351.3:c.1019A>G	p.Glu340Gly	p.E340G	ENST00000332351	NM_024426.4	340	gAg/gGg																																																																														
EED	8726	MSKCC	GRCh37	11	85989556	85989556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	204	489	0	ENST00000263360.6:c.1315C>G	p.Arg439Gly	p.R439G	ENST00000263360	NM_003797.3	439	Cga/Gga																																																																														
ATM	472	MSKCC	GRCh37	11	108106544	108106544	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	196	480	0	ENST00000278616.4:c.479C>G	p.Ser160Cys	p.S160C	ENST00000278616	NM_000051.3	160	tCt/tGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118380800	118380800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	181	430	1	ENST00000534358.1:c.11038G>A	p.Asp3680Asn	p.D3680N	ENST00000534358	NM_005933.3	3680	Gat/Aat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390757	118390757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	175	460	0	ENST00000534358.1:c.11407G>A	p.Glu3803Lys	p.E3803K	ENST00000534358	NM_005933.3	3803	Gag/Aag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416894	416894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	214	596	0	ENST00000399788.2:c.3656G>T	p.Arg1219Leu	p.R1219L	ENST00000399788	NM_001042603.1	1219	cGa/cTa																																																																														
CCND2	894	MSKCC	GRCh37	12	4398100	4398100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	119	718	0	ENST00000261254.3:c.664T>C	p.Ser222Pro	p.S222P	ENST00000261254	NM_001759.3	222	Tcg/Ccg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30102135	30102135	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	238	494	0	ENST00000331968.5:c.1332G>C	p.Trp444Cys	p.W444C	ENST00000331968	NM_002742.2	444	tgG/tgC																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060953	38060953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	248	508	0	ENST00000250448.2:c.1036G>T	p.Ala346Ser	p.A346S	ENST00000250448	NM_004496.3	346	Gcc/Tcc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707903	43707903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	392	774	0	ENST00000382044.4:c.4978G>A	p.Glu1660Lys	p.E1660K	ENST00000382044	NM_001141980.1	1660	Gaa/Aaa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396796	396796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	283	783	1	ENST00000262320.3:c.230C>T	p.Ser77Phe	p.S77F	ENST00000262320	NM_003502.3	77	tCc/tTc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662275	67662275	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	202	519	0	ENST00000264010.4:c.1521G>C	p.Glu507Asp	p.E507D	ENST00000264010	NM_006565.3	507	gaG/gaC																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618799	37618799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	156	613	0	ENST00000447079.4:c.475G>A	p.Asp159Asn	p.D159N	ENST00000447079	NM_015083.1	159	Gat/Aat																																																																														
BRCA1	672	MSKCC	GRCh37	17	41219655	41219655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	386	486	0	ENST00000357654.3:c.5044G>A	p.Glu1682Lys	p.E1682K	ENST00000357654	NM_007294.3	1682	Gaa/Aaa																																																																														
CARM1	10498	MSKCC	GRCh37	19	11031401	11031402	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	262	855	1	ENST00000327064.4:c.1401_1402delinsAA	p.Asp468Asn	p.D468N	ENST00000327064	NM_199141.1	467	ctGGat/ctAAat																																																																														
CALR	811	MSKCC	GRCh37	19	13051396	13051396	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	203	517	0	ENST00000316448.5:c.744G>C	p.Lys248Asn	p.K248N	ENST00000316448	NM_004343.3	248	aaG/aaC																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349872	15349872	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	313	775	0	ENST00000263377.2:c.3780G>C	p.Met1260Ile	p.M1260I	ENST00000263377	NM_058243.2	1260	atG/atC																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128051259	128051259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	310	758	0	ENST00000285398.2:c.64G>A	p.Glu22Lys	p.E22K	ENST00000285398	NM_000122.1	22	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288886	212288886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	162	260	0	ENST00000342788.4:c.2860G>A	p.Val954Ile	p.V954I	ENST00000342788	NM_005235.2	954	Gtc/Atc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589899	212589899	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	253	566	0	ENST00000342788.4:c.643G>C	p.Glu215Gln	p.E215Q	ENST00000342788	NM_005235.2	215	Gaa/Caa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280067	66280067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	53	364	0	ENST00000273854.3:c.1622G>A	p.Arg541Gln	p.R541Q	ENST00000273854	NM_004439.5	541	cGa/cAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157123	106157123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	268	545	0	ENST00000380013.4:c.2024C>T	p.Ser675Leu	p.S675L	ENST00000380013	NM_001127208.2	675	tCa/tTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589631	67589631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	33	340	0	ENST00000274335.5:c.1394G>C	p.Arg465Thr	p.R465T	ENST00000274335		465	aGa/aCa																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271563	26271563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	157	407	0	ENST00000305910.3:c.50C>T	p.Pro17Leu	p.P17L	ENST00000305910	NM_003534.2	17	cCg/cTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099872	157099872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	238	514	0	ENST00000346085.5:c.809C>G	p.Ser270Cys	p.S270C	ENST00000346085	NM_020732.3	270	tCc/tGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505389	157505389	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	218	527	0	ENST00000346085.5:c.3370G>T	p.Glu1124Ter	p.E1124*	ENST00000346085	NM_020732.3	1124	Gag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979507	2979507	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	259	682	0	ENST00000396946.4:c.740G>C	p.Arg247Thr	p.R247T	ENST00000396946	NM_032415.4	247	aGa/aCa																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015184	37015184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	187	547	0	ENST00000358127.4:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000358127	NM_001280556.1	74	Gag/Cag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1327784	1327784	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1562	241	708	0	ENST00000381566.1:c.97C>G	p.Gln33Glu	p.Q33E	ENST00000381566		33	Cag/Gag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412017	63412017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	300	382	0	ENST00000330258.3:c.1150G>C	p.Glu384Gln	p.E384Q	ENST00000330258	NM_152424.3	384	Gag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	8	458	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0049802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	50	616	0	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
RET	5979	MSKCC	GRCh37	10	43613871	43613871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	40	754	0	ENST00000355710.3:c.2335C>A	p.Leu779Met	p.L779M	ENST00000355710	NM_020975.4	779	Ctg/Atg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0028096-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	13	408	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814713	139814713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028096-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			776	51	707	0	ENST00000247668.2:c.706G>A	p.Glu236Lys	p.E236K	ENST00000247668	NM_021138.3	236	Gag/Aag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	406298	406298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028096-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			840	65	690	0	ENST00000399788.2:c.4143C>G	p.Ile1381Met	p.I1381M	ENST00000399788	NM_001042603.1	1381	atC/atG																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412002	63412002	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028096-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	162	388	0	ENST00000330258.3:c.1165G>T	p.Glu389Ter	p.E389*	ENST00000330258	NM_152424.3	389	Gaa/Taa																																																																														
STK11	6794	MSKCC	GRCh37	19	1221990	1221990	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028096-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	150	666	0	ENST00000326873.7:c.905A>C	p.Gln302Pro	p.Q302P	ENST00000326873	NM_000455.4	302	cAg/cCg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602326	10602326	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028096-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			774	206	815	0	ENST00000171111.5:c.1252del	p.Val418TrpfsTer40	p.V418Wfs*40	ENST00000171111	NM_203500.1	418	Gtg/tg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599283	28599283	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028096-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			876	185	821	0	ENST00000253063.3:c.729G>C	p.Arg243Ser	p.R243S	ENST00000253063	NM_031459.4	243	agG/agC																																																																														
NF1	4763	MSKCC	GRCh37	17	29483115	29483117	+	inframe_deletion	In_Frame_Del	DEL	ACT	ACT	-			P-0028096-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	38	524	0	ENST00000358273.4:c.179_181del	p.Thr60del	p.T60del	ENST00000358273	NM_001042492.2	59	ACT/-																																																																														
NF1	4763	MSKCC	GRCh37	17	29586066	29586066	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028096-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	27	498	0	ENST00000358273.4:c.4350del	p.Asn1451IlefsTer18	p.N1451Ifs*18	ENST00000358273	NM_001042492.2	1450	gCc/gc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211097	2211097	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0028096-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			699	154	734	0	ENST00000398665.3:c.1352-1G>C		p.X451_splice	ENST00000398665	NM_032482.2	451																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52713606	52713607	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0049011-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	44	572	0	ENST00000394830.3:c.121_122del	p.Leu41SerfsTer11	p.L41Sfs*11	ENST00000394830	NM_018313.4	41	CTt/t																																																																														
VHL	7428	MSKCC	GRCh37	3	10191547	10191547	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049011-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	107	711	0	ENST00000256474.2:c.540del	p.Ile180MetfsTer22	p.I180Mfs*22	ENST00000256474	NM_000551.3	180	atC/at																																																																														
RET	5979	MSKCC	GRCh37	10	43604679	43604679	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049011-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	76	634	1	ENST00000355710.3:c.1263+1G>A		p.X421_splice	ENST00000355710	NM_020975.4	421																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42839702	42839702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049011-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			647	110	796	0	ENST00000398585.3:c.1537A>G	p.Asn513Asp	p.N513D	ENST00000398585	NM_001135099.1	513	Aat/Gat																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	62	200	0	ENST00000345146.2:c.394C>G	p.Arg132Gly	p.R132G	ENST00000345146	NM_005896.2	132	Cgt/Ggt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	338	684	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	183	448	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874286	155874286	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	431	531	0	ENST00000368323.3:c.245T>G	p.Phe82Cys	p.F82C	ENST00000368323	NM_006912.5	82	tTt/tGt																																																																														
YES1	7525	MSKCC	GRCh37	18	756556	756556	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0049784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	212	372	0	ENST00000314574.4:c.271+1del		p.X91_splice	ENST00000314574	NM_005433.3	91																																																																															
FAT1	2195	MSKCC	GRCh37	4	187584612	187584612	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	196	540	1	ENST00000441802.2:c.3421G>T	p.Glu1141Ter	p.E1141*	ENST00000441802	NM_005245.3	1141	Gag/Tag																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073506	8073506	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	39	523	0	ENST00000377482.5:c.1153A>C	p.Asn385His	p.N385H	ENST00000377482	NM_018948.3	385	Aat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105688	27105688	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	28	438	0	ENST00000324856.7:c.5299G>T	p.Glu1767Ter	p.E1767*	ENST00000324856	NM_006015.4	1767	Gaa/Taa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115284219	115284219	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	54	645	0	ENST00000438362.2:c.67T>G	p.Leu23Val	p.L23V	ENST00000438362	NM_001242891.1	23	Tta/Gta																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	28	217	2	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																														
MRE11A	0	MSKCC	GRCh37	11	94212851	94212851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	28	505	0	ENST00000323929.3:c.391G>A	p.Asp131Asn	p.D131N	ENST00000323929	NM_005591.3	131	Gat/Aat																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	42	629	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906944	32906944	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs73169186		P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	24	490	0	ENST00000380152.3:c.1329G>T	p.Glu443Asp	p.E443D	ENST00000380152		443	gaG/gaT																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681031	37681031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143648695		P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	55	584	0	ENST00000447079.4:c.3200G>A	p.Arg1067Gln	p.R1067Q	ENST00000447079	NM_015083.1	1067	cGa/cAa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763364	59763364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	41	796	1	ENST00000259008.2:c.2738C>A	p.Ser913Tyr	p.S913Y	ENST00000259008	NM_032043.2	913	tCt/tAt																																																																														
YES1	7525	MSKCC	GRCh37	18	724431	724431	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	43	690	0	ENST00000314574.4:c.1625A>T	p.Asn542Ile	p.N542I	ENST00000314574	NM_005433.3	542	aAt/aTt																																																																														
REL	5966	MSKCC	GRCh37	2	61145543	61145543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	24	416	1	ENST00000295025.8:c.655C>T	p.Arg219Cys	p.R219C	ENST00000295025	NM_002908.2	219	Cgt/Tgt																																																																														
BARD1	580	MSKCC	GRCh37	2	215646164	215646164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	38	526	0	ENST00000260947.4:c.434T>C	p.Met145Thr	p.M145T	ENST00000260947	NM_000465.2	145	aTg/aCg																																																																														
ERG	2078	MSKCC	GRCh37	21	39762950	39762950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	32	427	0	ENST00000288319.7:c.886C>A	p.Leu296Ile	p.L296I	ENST00000288319	NM_182918.3	296	Ctt/Att																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149245635	149245635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	55	675	0	ENST00000360632.3:c.893C>A	p.Pro298His	p.P298H	ENST00000360632	NM_015472.4	298	cCt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	36	697	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	21	440	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	23	319	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672260	86672260	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	32	511	1	ENST00000274376.6:c.2062G>T	p.Glu688Ter	p.E688*	ENST00000274376	NM_002890.2	688	Gaa/Taa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971369	13971369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	20	439	0	ENST00000405192.2:c.560G>A	p.Arg187His	p.R187H	ENST00000405192	NM_001163147.1	187	cGc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880126	151880126	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146495785		P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	39	594	0	ENST00000262189.6:c.5198C>T	p.Ser1733Leu	p.S1733L	ENST00000262189	NM_170606.2	1733	tCg/tTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072522	5072522	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	24	371	0	ENST00000381652.3:c.1672A>C	p.Lys558Gln	p.K558Q	ENST00000381652	NM_004972.3	558	Aag/Cag																																																																														
AR	367	MSKCC	GRCh37	X	66942700	66942700	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200801099		P-0049788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	41	620	0	ENST00000374690.3:c.2481C>A	p.Phe827Leu	p.F827L	ENST00000374690	NM_000044.3	827	ttC/ttA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	211	583	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045009	47045009	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	182	949	0	ENST00000329236.7:c.2101C>T	p.Gln701Ter	p.Q701*	ENST00000329236	NM_001204466.1	701	Cag/Tag																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281768	49281768	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	345	860	0	ENST00000282018.3:c.815C>G	p.Thr272Arg	p.T272R	ENST00000282018	NM_020377.2	272	aCg/aGg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662103	227662103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	397	752	1	ENST00000305123.5:c.1352G>T	p.Gly451Val	p.G451V	ENST00000305123	NM_005544.2	451	gGc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			34	818	749	0	ENST00000269305.4:c.653T>G	p.Val218Gly	p.V218G	ENST00000269305	NM_001126112.2	218	gTg/gGg																																																																														
INSR	3643	MSKCC	GRCh37	19	7167980	7167980	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039511-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	279	537	0	ENST00000302850.5:c.1609G>A	p.Ala537Thr	p.A537T	ENST00000302850	NM_000208.2	537	Gcc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	71	181	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	117	374	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	171	226	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175561	112175561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	92	215	0	ENST00000257430.4:c.4271del	p.Pro1424GlnfsTer49	p.P1424Qfs*49	ENST00000257430	NM_000038.5	1424	Cca/ca																																																																														
EP300	2033	MSKCC	GRCh37	22	41526008	41526008	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	137	155	0	ENST00000263253.7:c.1282+1G>A		p.X428_splice	ENST00000263253	NM_001429.3	428																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27092711	27092711	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	115	233	0	ENST00000324856.7:c.2733-1G>C		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424957	49424957	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	157	783	1	ENST00000301067.7:c.13530+1G>A		p.X4510_splice	ENST00000301067	NM_003482.3	4510																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29099491	29099492	+	splice_donor_variant	Splice_Site	INS	-	-	CAATTCC			P-0048720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	90	149	0	ENST00000328354.6:c.903_908+1dup		p.X301_splice	ENST00000328354	NM_007194.3	301																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	146	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	117	325	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098815	178098823	+	inframe_deletion	In_Frame_Del	DEL	TCTAGTTGT	TCTAGTTGT	-			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			575	203	566	0	ENST00000397062.3:c.222_230del	p.Leu74_Asp77delinsPhe	p.L74_D77delinsF	ENST00000397062	NM_006164.4	74	ttACAACTAGAt/ttt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603120	48603120	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	158	483	0	ENST00000342988.3:c.1421C>G	p.Ser474Ter	p.S474*	ENST00000342988	NM_005359.5	474	tCa/tGa																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944967	31944967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	151	645	1	ENST00000340398.3:c.134C>A	p.Thr45Asn	p.T45N	ENST00000340398	NM_001013699.2	45	aCc/aAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436567	110436567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			857	243	1070	1	ENST00000375856.3:c.1834C>T	p.Leu612Phe	p.L612F	ENST00000375856	NM_003749.2	612	Ctc/Ttc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43784585	43784585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	89	500	0	ENST00000382044.4:c.89C>T	p.Ser30Phe	p.S30F	ENST00000382044	NM_001141980.1	30	tCt/tTt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43784619	43784619	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	94	464	0	ENST00000382044.4:c.55C>G	p.Gln19Glu	p.Q19E	ENST00000382044	NM_001141980.1	19	Cag/Gag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021137	31021137	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	207	600	1	ENST00000375687.4:c.1136A>T	p.Glu379Val	p.E379V	ENST00000375687	NM_015338.5	379	gAg/gTg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729954	41729954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	192	699	0	ENST00000242208.4:c.575C>T	p.Ala192Val	p.A192V	ENST00000242208	NM_002192.2	192	gCc/gTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040762	47040763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			804	224	916	0	ENST00000329236.7:c.1164dup	p.Gly389TrpfsTer51	p.G389Wfs*51	ENST00000329236	NM_001204466.1	388	cct/ccTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	131	489	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247028	53247028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	179	602	0	ENST00000375401.3:c.472G>A	p.Glu158Lys	p.E158K	ENST00000375401	NM_004187.3	158	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306676	41306676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	163	729	0	ENST00000373198.4:c.983G>A	p.Arg328His	p.R328H	ENST00000373198	NM_133170.3	328	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	110	507	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087961	27087961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	159	485	0	ENST00000324856.7:c.2248C>T	p.Arg750Ter	p.R750*	ENST00000324856	NM_006015.4	750	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	159	513	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748596	40748596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	119	441	0	ENST00000373198.4:c.2920C>T	p.Arg974Trp	p.R974W	ENST00000373198	NM_133170.3	974	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692835	89692835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	59	124	0	ENST00000371953.3:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000371953	NM_000314.4	107	Gat/Tat																																																																														
SPOP	8405	MSKCC	GRCh37	17	47677876	47677876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	114	531	1	ENST00000347630.2:c.989C>T	p.Ser330Leu	p.S330L	ENST00000347630	NM_001007230.1	330	tCg/tTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258036	123258036	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	140	455	0	ENST00000358487.5:c.1645A>C	p.Asn549His	p.N549H	ENST00000358487	NM_000141.4	549	Aat/Cat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812335	212812335	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	61	237	0	ENST00000342788.4:c.241C>T	p.Arg81Ter	p.R81*	ENST00000342788	NM_005235.2	81	Cga/Tga																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	23	214	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396589	396589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	194	680	1	ENST00000262320.3:c.437G>A	p.Arg146Gln	p.R146Q	ENST00000262320	NM_003502.3	146	cGa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133249847	133249847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	141	475	0	ENST00000320574.5:c.1376C>T	p.Ser459Phe	p.S459F	ENST00000320574	NM_006231.2	459	tCt/tTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9546725	9546725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	94	450	0	ENST00000353224.5:c.1297C>T	p.Arg433Trp	p.R433W	ENST00000353224	NM_177990.2	433	Cgg/Tgg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	34	327	1	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856190	111856190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	44	458	1	ENST00000341259.2:c.241G>A	p.Asp81Asn	p.D81N	ENST00000341259	NM_005475.2	81	Gac/Aac																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674234	86674234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	95	297	0	ENST00000274376.6:c.2366G>A	p.Arg789Gln	p.R789Q	ENST00000274376	NM_002890.2	789	cGa/cAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591086	67591086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	9	277	0	ENST00000274335.5:c.1679A>G	p.Asp560Gly	p.D560G	ENST00000274335		560	gAc/gGc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459558	50459558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	98	262	0	ENST00000331340.3:c.847C>A	p.Leu283Ile	p.L283I	ENST00000331340	NM_006060.4	283	Ctt/Att																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715350	117715350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	70	285	0	ENST00000368508.3:c.1139G>A	p.Arg380Lys	p.R380K	ENST00000368508	NM_002944.2	380	aGa/aAa																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874214	155874214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	84	545	0	ENST00000368323.3:c.317G>A	p.Arg106Gln	p.R106Q	ENST00000368323	NM_006912.5	106	cGa/cAa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672088	88672088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	54	176	0	ENST00000372037.3:c.622G>T	p.Asp208Tyr	p.D208Y	ENST00000372037	NM_004329.2	208	Gac/Tac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210688	36210688	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	177	627	0	ENST00000222270.7:c.439C>T	p.Arg147Ter	p.R147*	ENST00000222270	NM_014727.1	147	Cga/Tga																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740529	58740529	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	120	467	2	ENST00000305921.3:c.1434C>A	p.Cys478Ter	p.C478*	ENST00000305921	NM_003620.3	478	tgC/tgA																																																																														
ATRX	546	MSKCC	GRCh37	X	76776309	76776309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	162	594	0	ENST00000373344.5:c.7157G>A	p.Arg2386Gln	p.R2386Q	ENST00000373344	NM_000489.3	2386	cGa/cAa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515591	31515591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	109	362	1	ENST00000344624.3:c.1028C>A	p.Ser343Tyr	p.S343Y	ENST00000344624		343	tCt/tAt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041214	29041214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	33	551	0	ENST00000282397.4:c.214G>A	p.Glu72Lys	p.E72K	ENST00000282397	NM_002019.4	72	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906949	32906949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	109	381	0	ENST00000380152.3:c.1334C>A	p.Ser445Tyr	p.S445Y	ENST00000380152		445	tCt/tAt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784902	9784902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	164	748	3	ENST00000377346.4:c.2905C>T	p.Arg969Cys	p.R969C	ENST00000377346	NM_005026.3	969	Cgc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938995	76938995	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	157	456	0	ENST00000373344.5:c.1753G>T	p.Glu585Ter	p.E585*	ENST00000373344	NM_000489.3	585	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692947	89692947	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	144	487	0	ENST00000371953.3:c.431A>C	p.Lys144Thr	p.K144T	ENST00000371953	NM_000314.4	144	aAa/aCa																																																																														
NF1	4763	MSKCC	GRCh37	17	29592288	29592288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185660700		P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	14	244	1	ENST00000358273.4:c.4766C>T	p.Thr1589Met	p.T1589M	ENST00000358273	NM_001042492.2	1589	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089719	27089719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	191	754	0	ENST00000324856.7:c.2675G>A	p.Arg892Gln	p.R892Q	ENST00000324856	NM_006015.4	892	cGg/cAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943716	9943716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	81	646	1	ENST00000330684.3:c.1225G>A	p.Val409Ile	p.V409I	ENST00000330684	NM_001134407.1	409	Gtc/Atc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176484	123176484	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	106	306	0	ENST00000218089.9:c.451G>T	p.Glu151Ter	p.E151*	ENST00000218089	NM_001042749.1	151	Gaa/Taa																																																																														
AR	367	MSKCC	GRCh37	X	66942713	66942713	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	91	514	0	ENST00000374690.3:c.2494C>T	p.Arg832Ter	p.R832*	ENST00000374690	NM_000044.3	832	Cga/Tga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156830924	156830924	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	148	665	0	ENST00000524377.1:c.198G>T	p.Glu66Asp	p.E66D	ENST00000524377	NM_002529.3	66	gaG/gaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831540	72831540	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	204	657	0	ENST00000268489.5:c.5041A>C	p.Ser1681Arg	p.S1681R	ENST00000268489	NM_006885.3	1681	Agc/Cgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993100	72993100	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	211	691	0	ENST00000268489.5:c.945A>C	p.Lys315Asn	p.K315N	ENST00000268489	NM_006885.3	315	aaA/aaC																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62323153	62323153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	39	543	0	ENST00000508582.2:c.2687G>A	p.Arg896Gln	p.R896Q	ENST00000508582		896	cGa/cAa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643488	52643488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	142	430	0	ENST00000394830.3:c.2408C>A	p.Ser803Tyr	p.S803Y	ENST00000394830	NM_018313.4	803	tCt/tAt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138452210	138452210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	159	394	3	ENST00000289153.2:c.1043C>T	p.Thr348Ile	p.T348I	ENST00000289153	NM_006219.2	348	aCt/aTt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675598	86675598	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	102	265	0	ENST00000274376.6:c.2534T>G	p.Leu845Ter	p.L845*	ENST00000274376	NM_002890.2	845	tTa/tGa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180055989	180055989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	155	687	0	ENST00000261937.6:c.996C>A	p.Phe332Leu	p.F332L	ENST00000261937	NM_182925.4	332	ttC/ttA																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816567	32816567	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	186	646	0	ENST00000354258.4:c.1608G>T	p.Glu536Asp	p.E536D	ENST00000354258	NM_000593.5	536	gaG/gaT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860080	151860080	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	108	392	0	ENST00000262189.6:c.10582A>C	p.Asn3528His	p.N3528H	ENST00000262189	NM_170606.2	3528	Aat/Cat																																																																														
AGO2	27161	MSKCC	GRCh37	8	141569559	141569559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	147	475	0	ENST00000220592.5:c.725G>T	p.Ser242Ile	p.S242I	ENST00000220592	NM_012154.3	242	aGt/aTt																																																																														
ARAF	369	MSKCC	GRCh37	X	47424384	47424384	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	136	595	0	ENST00000377045.4:c.304G>A	p.Val102Ile	p.V102I	ENST00000377045	NM_001654.4	102	Gta/Ata																																																																														
ATRX	546	MSKCC	GRCh37	X	76874434	76874434	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	80	250	0	ENST00000373344.5:c.5288A>C	p.Asn1763Thr	p.N1763T	ENST00000373344	NM_000489.3	1763	aAt/aCt																																																																														
ATR	545	MSKCC	GRCh37	3	142168330	142168330	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	97	415	0	ENST00000350721.4:c.7876G>T	p.Glu2626Ter	p.E2626*	ENST00000350721	NM_001184.3	2626	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			42	30	387	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			90	66	333	0				ENST00000310581	NM_198253.2																																																																																
BTK	695	MSKCC	GRCh37	X	100629540	100629540	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			81	92	473	0	ENST00000308731.7:c.224C>G	p.Pro75Arg	p.P75R	ENST00000308731	NM_000061.2	75	cCa/cGa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061113	38061120	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAGGGC	CTCAGGGC	-			P-0049584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	55	394	1	ENST00000250448.2:c.869_876del	p.Gly290GlufsTer10	p.G290Efs*10	ENST00000250448	NM_004496.3	290	gGCCCTGAG/g																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243268	123243268	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	26	701	0	ENST00000358487.5:c.2245A>C	p.Thr749Pro	p.T749P	ENST00000358487	NM_000141.4	749	Acg/Ccg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753044	42753044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	111	854	0	ENST00000222329.4:c.1220G>A	p.Gly407Asp	p.G407D	ENST00000222329	NM_006494.2	407	gGc/gAc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753059	42753059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	113	839	0	ENST00000222329.4:c.1205G>A	p.Ser402Asn	p.S402N	ENST00000222329	NM_006494.2	402	aGc/aAc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753130	42753130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	114	812	0	ENST00000222329.4:c.1134G>C	p.Lys378Asn	p.K378N	ENST00000222329	NM_006494.2	378	aaG/aaC																																																																														
ERF	2077	MSKCC	GRCh37	19	42754580	42754580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	115	785	0	ENST00000222329.4:c.160G>A	p.Glu54Lys	p.E54K	ENST00000222329	NM_006494.2	54	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0049728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	316	631	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	151	682	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
MET	4233	MSKCC	GRCh37	7	116397807	116397807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	74	351	0	ENST00000397752.3:c.2081G>A	p.Gly694Glu	p.G694E	ENST00000397752	NM_000245.2	694	gGa/gAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	130	145	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657622	37657623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGAATAC			P-0049730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	33	165	0	ENST00000447079.4:c.2542_2549dup	p.Cys850TrpfsTer21	p.C850Wfs*21	ENST00000447079	NM_015083.1	847	ttg/tTGGAATACtg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100988	27100988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	141	516	0	ENST00000324856.7:c.4270C>T	p.Gln1424Ter	p.Q1424*	ENST00000324856	NM_006015.4	1424	Cag/Tag																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933736	36933737	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	154	683	1	ENST00000361632.4:c.1662_1663delinsAA	p.Gly555Arg	p.G555R	ENST00000361632		554	ctGGgg/ctAAgg																																																																														
MYCL	4610	MSKCC	GRCh37	1	40367114	40367114	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	154	441	0	ENST00000397332.2:c.83G>A	p.Gly28Glu	p.G28E	ENST00000397332	NM_001033082.2	28	gGa/gAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65301147	65301147	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	58	204	0	ENST00000342505.4:c.3301G>C	p.Val1101Leu	p.V1101L	ENST00000342505	NM_002227.2	1101	Gtc/Ctc																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551955	150551955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	235	451	0	ENST00000369026.2:c.52G>A	p.Gly18Arg	p.G18R	ENST00000369026	NM_021960.4	18	Ggg/Agg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981831	201981831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	167	716	0	ENST00000359651.3:c.542C>T	p.Pro181Leu	p.P181L	ENST00000359651		181	cCc/cTc																																																																														
PARP1	142	MSKCC	GRCh37	1	226578253	226578253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	123	509	2	ENST00000366794.5:c.475C>T	p.His159Tyr	p.H159Y	ENST00000366794	NM_001618.3	159	Cat/Tat																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852482	63852482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	114	441	0	ENST00000279873.7:c.3260G>T	p.Cys1087Phe	p.C1087F	ENST00000279873	NM_032199.2	1087	tGt/tTt																																																																														
PGR	5241	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	34	180	0	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga																																																																														
PGR	5241	MSKCC	GRCh37	11	100999566	100999566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	155	738	1	ENST00000325455.5:c.236C>T	p.Ser79Leu	p.S79L	ENST00000325455	NM_001202474.3	79	tCg/tTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343804	118343804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	107	367	0	ENST00000534358.1:c.1930C>T	p.Arg644Cys	p.R644C	ENST00000534358	NM_005933.3	644	Cgc/Tgc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360602	118360602	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	93	294	0	ENST00000534358.1:c.4575G>A	p.Trp1525Ter	p.W1525*	ENST00000534358	NM_005933.3	1525	tgG/tgA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118368766	118368766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	104	326	2	ENST00000534358.1:c.5780C>T	p.Ala1927Val	p.A1927V	ENST00000534358	NM_005933.3	1927	gCt/gTt																																																																														
CBL	867	MSKCC	GRCh37	11	119149251	119149251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	112	373	1	ENST00000264033.4:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000264033	NM_005188.3	420	cGa/cAa																																																																														
CBL	867	MSKCC	GRCh37	11	119169125	119169125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	98	449	0	ENST00000264033.4:c.2309A>G	p.Glu770Gly	p.E770G	ENST00000264033	NM_005188.3	770	gAg/gGg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644490	18644490	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs181773550		P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	16	182	0	ENST00000266497.5:c.2668G>A	p.Asp890Asn	p.D890N	ENST00000266497		890	Gat/Aat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800819	18800819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	34	234	0	ENST00000266497.5:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000266497		1399	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444367	49444367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	203	542	0	ENST00000301067.7:c.3004C>T	p.Pro1002Ser	p.P1002S	ENST00000301067	NM_003482.3	1002	Ccc/Tcc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865537	57865537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	163	608	0	ENST00000228682.2:c.3014G>A	p.Gly1005Glu	p.G1005E	ENST00000228682	NM_005269.2	1005	gGa/gAa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233343	69233343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	59	249	1	ENST00000462284.1:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000462284	NM_002392.5	403	cCa/cTa																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784089	120784089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	205	691	1	ENST00000257552.2:c.896C>T	p.Ser299Leu	p.S299L	ENST00000257552	NM_002442.3	299	tCg/tTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133209315	133209315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	165	619	1	ENST00000320574.5:c.6071C>T	p.Pro2024Leu	p.P2024L	ENST00000320574	NM_006231.2	2024	cCc/cTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28880899	28880899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	118	325	0	ENST00000282397.4:c.3731G>A	p.Gly1244Asp	p.G1244D	ENST00000282397	NM_002019.4	1244	gGc/gAc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28919595	28919595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	96	375	0	ENST00000282397.4:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000282397	NM_002019.4	781	cGa/cAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28931718	28931718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	108	383	1	ENST00000282397.4:c.2221G>A	p.Glu741Lys	p.E741K	ENST00000282397	NM_002019.4	741	Gaa/Aaa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093371	30093371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	44	304	0	ENST00000331968.5:c.1892T>C	p.Val631Ala	p.V631A	ENST00000331968	NM_002742.2	631	gTt/gCt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100221	30100221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	54	207	0	ENST00000331968.5:c.1399C>T	p.Pro467Ser	p.P467S	ENST00000331968	NM_002742.2	467	Cct/Tct																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68331729	68331729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	51	135	0	ENST00000487270.1:c.325C>T	p.Pro109Ser	p.P109S	ENST00000487270	NM_133509.3	109	Cca/Tca																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729090	66729090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	43	380	0	ENST00000307102.5:c.298C>T	p.His100Tyr	p.H100Y	ENST00000307102	NM_002755.3	100	Cat/Tat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678334	88678334	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	142	450	0	ENST00000360948.2:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000360948	NM_001012338.2	401	cCa/cTa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500617	99500617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	133	503	0	ENST00000268035.6:c.4050C>G	p.Asn1350Lys	p.N1350K	ENST00000268035	NM_000875.3	1350	aaC/aaG																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347953	347953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	181	824	0	ENST00000262320.3:c.1553C>T	p.Pro518Leu	p.P518L	ENST00000262320	NM_003502.3	518	cCc/cTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2127693	2127693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	136	500	1	ENST00000219476.3:c.2932C>T	p.Arg978Cys	p.R978C	ENST00000219476	NM_000548.3	978	Cgc/Tgc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640325	3640325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	176	633	0	ENST00000294008.3:c.3314C>T	p.Ser1105Phe	p.S1105F	ENST00000294008	NM_032444.2	1105	tCc/tTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779208	3779208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	118	392	0	ENST00000262367.5:c.5840C>T	p.Pro1947Leu	p.P1947L	ENST00000262367	NM_004380.2	1947	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858184	9858184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	114	385	1	ENST00000330684.3:c.3217G>A	p.Glu1073Lys	p.E1073K	ENST00000330684	NM_001134407.1	1073	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858712	9858712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	82	333	1	ENST00000330684.3:c.2689C>T	p.Leu897Phe	p.L897F	ENST00000330684	NM_001134407.1	897	Ctc/Ttc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032067	10032067	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	111	460	0	ENST00000330684.3:c.756T>A	p.Asp252Glu	p.D252E	ENST00000330684	NM_001134407.1	252	gaT/gaA																																																																														
PALB2	79728	MSKCC	GRCh37	16	23634336	23634337	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	79	455	2	ENST00000261584.4:c.2949_2950delinsTT	p.Leu984Phe	p.L984F	ENST00000261584	NM_024675.3	983	acCCtt/acTTtt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647068	23647068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	109	451	0	ENST00000261584.4:c.799C>T	p.Pro267Ser	p.P267S	ENST00000261584	NM_024675.3	267	Cct/Tct																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783766	50783766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	69	411	0	ENST00000398568.2:c.157C>T	p.Arg53Cys	p.R53C	ENST00000398568	NM_001042412.1	53	Cgt/Tgt																																																																														
CDH1	999	MSKCC	GRCh37	16	68862130	68862130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	151	438	1	ENST00000261769.5:c.2218C>T	p.Pro740Ser	p.P740S	ENST00000261769	NM_004360.3	740	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	160	516	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29679365	29679366	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	103	350	1	ENST00000358273.4:c.7548_7549delinsTT	p.Arg2517Ter	p.R2517*	ENST00000358273	NM_001042492.2	2516	ccCCga/ccTTga																																																																														
STAT3	6774	MSKCC	GRCh37	17	40476855	40476855	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	106	393	0	ENST00000264657.5:c.1474T>G	p.Phe492Val	p.F492V	ENST00000264657	NM_139276.2	492	Ttt/Gtt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41209101	41209101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	119	414	0	ENST00000357654.3:c.5245C>T	p.Pro1749Ser	p.P1749S	ENST00000357654	NM_007294.3	1749	Cca/Tca																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761219	59761219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	97	491	0	ENST00000259008.2:c.3188C>T	p.Ser1063Leu	p.S1063L	ENST00000259008	NM_032043.2	1063	tCg/tTg																																																																														
CD79B	974	MSKCC	GRCh37	17	62006627	62006627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1063625		P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	144	614	0	ENST00000392795.3:c.652G>A	p.Glu218Lys	p.E218K	ENST00000392795	NM_001039933.1	218	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281203	15281203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	226	770	0	ENST00000263388.2:c.5053G>A	p.Asp1685Asn	p.D1685N	ENST00000263388	NM_000435.2	1685	Gac/Aac																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943450	17943450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	178	668	0	ENST00000458235.1:c.2558C>T	p.Ala853Val	p.A853V	ENST00000458235	NM_000215.3	853	gCc/gTc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952229	17952229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	187	613	0	ENST00000458235.1:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000458235	NM_000215.3	371	Gaa/Aaa																																																																														
CD79A	973	MSKCC	GRCh37	19	42384797	42384797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	79	287	0	ENST00000221972.3:c.559C>T	p.Leu187Phe	p.L187F	ENST00000221972	NM_021601.3	187	Ctt/Ttt																																																																														
CIC	23152	MSKCC	GRCh37	19	42797201	42797201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	204	748	0	ENST00000575354.2:c.3563C>T	p.Pro1188Leu	p.P1188L	ENST00000575354	NM_015125.3	1188	cCc/cTc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714577	52714577	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	182	600	0	ENST00000322088.6:c.335T>C	p.Leu112Ser	p.L112S	ENST00000322088	NM_014225.5	112	tTa/tCa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470997	25470997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	136	612	0	ENST00000264709.3:c.764C>T	p.Ser255Phe	p.S255F	ENST00000264709	NM_175629.2	255	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	29430044	29430044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	145	417	0	ENST00000389048.3:c.3931G>A	p.Asp1311Asn	p.D1311N	ENST00000389048	NM_004304.4	1311	Gac/Aac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483982	212483982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	55	257	0	ENST00000342788.4:c.2221G>A	p.Gly741Arg	p.G741R	ENST00000342788	NM_005235.2	741	Gga/Aga																																																																														
BARD1	580	MSKCC	GRCh37	2	215645606	215645606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	110	423	0	ENST00000260947.4:c.992C>T	p.Pro331Leu	p.P331L	ENST00000260947	NM_000465.2	331	cCc/cTc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794835	242794835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	163	617	0	ENST00000334409.5:c.374C>T	p.Ala125Val	p.A125V	ENST00000334409	NM_005018.2	125	gCc/gTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790092	40790092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	136	497	0	ENST00000373198.4:c.2639C>T	p.Pro880Leu	p.P880L	ENST00000373198	NM_133170.3	880	cCc/cTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944530	40944530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	111	378	0	ENST00000373198.4:c.1972C>T	p.Leu658Phe	p.L658F	ENST00000373198	NM_133170.3	658	Ctc/Ttc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100912	41100912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	121	428	0	ENST00000373198.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000373198	NM_133170.3	482	Gaa/Aaa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264311	46264312	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	99	327	0	ENST00000371998.3:c.1358_1359delinsTT	p.Ser453Phe	p.S453F	ENST00000371998		453	tCC/tTT																																																																														
NF2	4771	MSKCC	GRCh37	22	30057251	30057251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	142	512	0	ENST00000338641.4:c.733G>C	p.Asp245His	p.D245H	ENST00000338641	NM_000268.3	245	Gac/Cac																																																																														
EP300	2033	MSKCC	GRCh37	22	41545112	41545112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	136	407	1	ENST00000263253.7:c.2312C>T	p.Pro771Leu	p.P771L	ENST00000263253	NM_001429.3	771	cCa/cTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41574739	41574739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	309	595	0	ENST00000263253.7:c.7024C>T	p.Pro2342Ser	p.P2342S	ENST00000263253	NM_001429.3	2342	Cca/Tca																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641709	12641709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	126	406	0	ENST00000251849.4:c.932C>T	p.Pro311Leu	p.P311L	ENST00000251849	NM_002880.3	311	cCc/cTc																																																																														
ATR	545	MSKCC	GRCh37	3	142186843	142186843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	48	249	0	ENST00000350721.4:c.6620C>T	p.Ser2207Phe	p.S2207F	ENST00000350721	NM_001184.3	2207	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189585728	189585728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	73	265	0	ENST00000264731.3:c.989G>A	p.Arg330Lys	p.R330K	ENST00000264731	NM_003722.4	330	aGa/aAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189608578	189608578	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	86	353	0	ENST00000264731.3:c.1653T>A	p.Ser551Arg	p.S551R	ENST00000264731	NM_003722.4	551	agT/agA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141026	55141026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	70	243	0	ENST00000257290.5:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000257290	NM_006206.4	558	Cgc/Tgc																																																																														
TET2	54790	MSKCC	GRCh37	4	106155881	106155881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	76	308	0	ENST00000380013.4:c.782C>A	p.Ser261Tyr	p.S261Y	ENST00000380013	NM_001127208.2	261	tCc/tAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	221	363	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876323	35876323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	229	429	0	ENST00000303115.3:c.1115G>A	p.Gly372Glu	p.G372E	ENST00000303115	NM_002185.3	372	gGg/gAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945821	38945821	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	41	178	0	ENST00000357387.3:c.4405C>G	p.Pro1469Ala	p.P1469A	ENST00000357387	NM_152756.3	1469	Cca/Gca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38966783	38966783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	19	130	0	ENST00000357387.3:c.1259C>T	p.Ser420Leu	p.S420L	ENST00000357387	NM_152756.3	420	tCa/tTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638823	176638823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	143	453	0	ENST00000439151.2:c.3423G>C	p.Met1141Ile	p.M1141I	ENST00000439151	NM_022455.4	1141	atG/atC																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721009	176721009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	105	498	0	ENST00000439151.2:c.6640G>A	p.Glu2214Lys	p.E2214K	ENST00000439151	NM_022455.4	2214	Gaa/Aaa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185017	32185017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	158	573	0	ENST00000375023.3:c.1651G>A	p.Asp551Asn	p.D551N	ENST00000375023	NM_004557.3	551	Gat/Aat																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967210	93967210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	32	258	0	ENST00000369303.4:c.2142G>T	p.Met714Ile	p.M714I	ENST00000369303	NM_004440.3	714	atG/atT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967895	93967895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	75	401	0	ENST00000369303.4:c.2032G>A	p.Asp678Asn	p.D678N	ENST00000369303	NM_004440.3	678	Gac/Aac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962342	2962342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	155	665	0	ENST00000396946.4:c.2195C>T	p.Thr732Ile	p.T732I	ENST00000396946	NM_032415.4	732	aCc/aTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984154	2984154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	84	397	0	ENST00000396946.4:c.376G>A	p.Gly126Ser	p.G126S	ENST00000396946	NM_032415.4	126	Ggc/Agc																																																																														
MET	4233	MSKCC	GRCh37	7	116340252	116340252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	78	285	1	ENST00000397752.3:c.1114G>A	p.Asp372Asn	p.D372N	ENST00000397752	NM_000245.2	372	Gac/Aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	70	270	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
EZH2	2146	MSKCC	GRCh37	7	148543608	148543608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	106	305	0	ENST00000320356.2:c.200C>T	p.Pro67Leu	p.P67L	ENST00000320356	NM_004456.4	67	cCt/cTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859270	151859270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	73	233	0	ENST00000262189.6:c.11392A>G	p.Ile3798Val	p.I3798V	ENST00000262189	NM_170606.2	3798	Att/Gtt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956771	68956771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	144	497	0	ENST00000288368.4:c.889C>T	p.Arg297Cys	p.R297C	ENST00000288368	NM_024870.2	297	Cgt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028118	69028118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	73	349	0	ENST00000288368.4:c.3277G>A	p.Glu1093Lys	p.E1093K	ENST00000288368	NM_024870.2	1093	Gaa/Aaa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141582931	141582932	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	281	472	1	ENST00000220592.5:c.315_316delinsTT	p.Leu106Phe	p.L106F	ENST00000220592	NM_012154.3	105	ccCCtt/ccTTtt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518385	8518385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	64	223	0	ENST00000356435.5:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000356435		336	Gct/Act																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636799	8636799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	109	333	1	ENST00000356435.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000356435		37	tCt/tTt																																																																														
TEK	7010	MSKCC	GRCh37	9	27217687	27217687	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	376	345	0	ENST00000380036.4:c.2993G>A	p.Gly998Glu	p.G998E	ENST00000380036	NM_000459.3	998	gGa/gAa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482242	87482242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	162	475	0	ENST00000277120.3:c.1529C>T	p.Ser510Leu	p.S510L	ENST00000277120		510	tCg/tTg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127911957	127911957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	73	264	0	ENST00000373547.4:c.913C>T	p.Leu305Phe	p.L305F	ENST00000373547	NM_002721.4	305	Ctt/Ttt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781304	135781304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	135	548	0	ENST00000298552.3:c.1661C>T	p.Pro554Leu	p.P554L	ENST00000298552	NM_001162426.1	554	cCc/cTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391526	139391526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	198	744	1	ENST00000277541.6:c.6665C>T	p.Pro2222Leu	p.P2222L	ENST00000277541	NM_017617.3	2222	cCg/cTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409119	139409119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	175	651	0	ENST00000277541.6:c.2050G>A	p.Gly684Ser	p.G684S	ENST00000277541	NM_017617.3	684	Ggc/Agc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930238	39930238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202065982		P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	138	426	1	ENST00000378444.4:c.3226G>A	p.Glu1076Lys	p.E1076K	ENST00000378444	NM_001123385.1	1076	Gaa/Aaa																																																																														
ARAF	369	MSKCC	GRCh37	X	47430406	47430406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	145	516	0	ENST00000377045.4:c.1681C>T	p.Pro561Ser	p.P561S	ENST00000377045	NM_001654.4	561	Ccc/Tcc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649719	48649719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	147	610	0	ENST00000376670.3:c.203C>T	p.Ala68Val	p.A68V	ENST00000376670	NM_002049.3	68	gCc/gTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413032	63413033	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	164	648	1	ENST00000330258.3:c.134_135delinsTT	p.Ser45Phe	p.S45F	ENST00000330258	NM_152424.3	45	tCC/tTT																																																																														
MED12	9968	MSKCC	GRCh37	X	70351923	70351923	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	107	411	0	ENST00000374080.3:c.4120G>A	p.Glu1374Lys	p.E1374K	ENST00000374080		1374	Gag/Aag																																																																														
MED12	9968	MSKCC	GRCh37	X	70356736	70356736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	122	504	0	ENST00000374080.3:c.5408G>A	p.Gly1803Glu	p.G1803E	ENST00000374080		1803	gGa/gAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76855266	76855266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	32	222	0	ENST00000373344.5:c.5721G>A	p.Met1907Ile	p.M1907I	ENST00000373344	NM_000489.3	1907	atG/atA																																																																														
ATRX	546	MSKCC	GRCh37	X	76954067	76954067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	33	266	0	ENST00000373344.5:c.184G>A	p.Glu62Lys	p.E62K	ENST00000373344	NM_000489.3	62	Gaa/Aaa																																																																														
BTK	695	MSKCC	GRCh37	X	100626668	100626668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	79	304	0	ENST00000308731.7:c.262G>A	p.Glu88Lys	p.E88K	ENST00000308731	NM_000061.2	88	Gaa/Aaa																																																																														
XIAP	331	MSKCC	GRCh37	X	123019877	123019877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	126	472	0	ENST00000355640.3:c.365G>A	p.Gly122Glu	p.G122E	ENST00000355640		122	gGa/gAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185192	123185192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	27	182	0	ENST00000218089.9:c.1144A>C	p.Lys382Gln	p.K382Q	ENST00000218089	NM_001042749.1	382	Aaa/Caa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123227968	123227968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	38	235	0	ENST00000218089.9:c.3679G>A	p.Asp1227Asn	p.D1227N	ENST00000218089	NM_001042749.1	1227	Gat/Aat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028885	47028885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	46	371	0	ENST00000329236.7:c.189G>T	p.Glu63Asp	p.E63D	ENST00000329236	NM_001204466.1	63	gaG/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	96	678	0	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575200	48575200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	37	277	0	ENST00000342988.3:c.394C>T	p.His132Tyr	p.H132Y	ENST00000342988	NM_005359.5	132	Cac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	46	298	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0049742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	89	487	1	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	54	639	3	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	47	316	0	ENST00000371953.3:c.388del	p.Arg130GlufsTer4	p.R130Efs*4	ENST00000371953	NM_000314.4	130	Cga/ga																																																																														
CARM1	10498	MSKCC	GRCh37	19	11019809	11019809	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	114	519	0	ENST00000327064.4:c.484A>G	p.Met162Val	p.M162V	ENST00000327064	NM_199141.1	162	Atg/Gtg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225338991	225338991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	44	339	0	ENST00000264414.4:c.2278G>A	p.Asp760Asn	p.D760N	ENST00000264414	NM_003590.4	760	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554955	187554956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	61	293	0	ENST00000441802.2:c.4205dup	p.Asp1403ArgfsTer16	p.D1403Rfs*16	ENST00000441802	NM_005245.3	1402	ttc/ttTc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181836	56181837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCGTGGCCTT			P-0049742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	44	313	0	ENST00000399503.3:c.4063_4073dup	p.Tyr1359ValfsTer22	p.Y1359Vfs*22	ENST00000399503	NM_005921.1	1354	ctc/cTCCGTGGCCTTtc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200453	138200453	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	104	512	0	ENST00000237289.4:c.1871G>C	p.Cys624Ser	p.C624S	ENST00000237289	NM_001270507.1	624	tGc/tCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	378	486	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	120	434	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	120	434	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045016	47045016	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	330	692	0	ENST00000329236.7:c.2108C>G	p.Ser703Ter	p.S703*	ENST00000329236	NM_001204466.1	703	tCa/tGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	120	434	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572538	64572538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	134	613	0	ENST00000337652.1:c.1333C>T	p.Leu445Phe	p.L445F	ENST00000337652	NM_130803.2	445	Ctt/Ttt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341347	89341354	+	frameshift_variant	Frame_Shift_Del	DEL	AGGATACG	AGGATACG	-			P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	239	473	0	ENST00000301030.4:c.7581_7588del	p.Ile2527MetfsTer2	p.I2527Mfs*2	ENST00000301030	NM_001256183.1	2527	atCGTATCCTgt/atgt																																																																														
SDHA	6389	MSKCC	GRCh37	5	233709	233709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	122	498	1	ENST00000264932.6:c.1013C>T	p.Ala338Val	p.A338V	ENST00000264932	NM_004168.2	338	gCg/gTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	22	530	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0049746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	13	370	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0049747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	19	383	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0049747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	10	274	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0049747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	87	299	0	ENST00000371953.3:c.48T>A	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taA																																																																														
CDH1	999	MSKCC	GRCh37	16	68844190	68844190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	54	479	0	ENST00000261769.5:c.778C>A	p.Pro260Thr	p.P260T	ENST00000261769	NM_004360.3	260	Ccc/Acc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20159754	20159754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	71	441	0	ENST00000379607.5:c.5C>G	p.Pro2Arg	p.P2R	ENST00000379607	NM_001412.3	2	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	33	516	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625251	69625251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148203315		P-0049752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	70	808	1	ENST00000334134.2:c.542G>A	p.Arg181His	p.R181H	ENST00000334134	NM_005247.2	181	cGc/cAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48878132	48878132	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	17	88	0	ENST00000267163.4:c.84del	p.Pro29LeufsTer36	p.P29Lfs*36	ENST00000267163	NM_000321.2	28	ccT/cc																																																																														
MET	4233	MSKCC	GRCh37	7	116340061	116340061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	48	275	0	ENST00000397752.3:c.923C>G	p.Ser308Cys	p.S308C	ENST00000397752	NM_000245.2	308	tCc/tGc																																																																														
MET	4233	MSKCC	GRCh37	7	116411895	116411898	+	splice_region_variant,intron_variant	Splice_Region	ONP	GTTT	GTTT	AAAA			P-0049752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	125	626	1	ENST00000397752.3:c.2888-8_2888-5delinsAAAA		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	130	536	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	158	612	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932321	39932321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	88	714	0	ENST00000378444.4:c.2278C>A	p.Leu760Ile	p.L760I	ENST00000378444	NM_001123385.1	760	Ctc/Atc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632609	3632609	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201214017		P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	69	726	0	ENST00000294008.3:c.5239G>A	p.Val1747Met	p.V1747M	ENST00000294008	NM_032444.2	1747	Gtg/Atg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50818246	50818246	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	22	214	0	ENST00000398568.2:c.1824T>A	p.Phe608Leu	p.F608L	ENST00000398568	NM_001042412.1	608	ttT/ttA																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17384802	17384802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	169	597	2	ENST00000359435.4:c.434C>T	p.Ala145Val	p.A145V	ENST00000359435	NM_001033549.1	145	gCa/gTa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224771	36224771	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	94	717	0	ENST00000222270.7:c.7157C>T	p.Ser2386Leu	p.S2386L	ENST00000222270	NM_014727.1	2386	tCa/tTa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073616	8073617	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	AAA			P-0049754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	54	338	2	ENST00000377482.5:c.1042_1043delinsTTT	p.Pro348PhefsTer8	p.P348Ffs*8	ENST00000377482	NM_018948.3	348	CCg/TTTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	179	626	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534365	63534365	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	201	858	0	ENST00000307078.5:c.1156G>C	p.Glu386Gln	p.E386Q	ENST00000307078	NM_004655.3	386	Gag/Cag																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	30	373	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	27	257	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198270085	198270085	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	56	448	0	ENST00000335508.6:c.1351C>T	p.Arg451Ter	p.R451*	ENST00000335508	NM_012433.2	451	Cga/Tga																																																																														
MLH1	4292	MSKCC	GRCh37	3	37058999	37058999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	29	309	0	ENST00000231790.2:c.793C>T	p.Arg265Cys	p.R265C	ENST00000231790	NM_000249.3	265	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	28	449	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
SDHB	6390	MSKCC	GRCh37	1	17371320	17371320	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	45	541	1	ENST00000375499.3:c.136C>T	p.Arg46Ter	p.R46*	ENST00000375499	NM_003000.2	46	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175166	112175166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371113837		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	28	226	0	ENST00000257430.4:c.3875C>T	p.Thr1292Met	p.T1292M	ENST00000257430	NM_000038.5	1292	aCg/aTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508083	106508083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	36	362	0	ENST00000359195.3:c.77G>A	p.Arg26His	p.R26H	ENST00000359195	NM_002649.2	26	cGc/cAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	62	448	0	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9547022	9547022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	31	283	0	ENST00000353224.5:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000353224	NM_177990.2	334	Gat/Aat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528778	157528778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	67	545	1	ENST00000346085.5:c.6503C>T	p.Thr2168Met	p.T2168M	ENST00000346085	NM_020732.3	2168	aCg/aTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857785	9857785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	62	527	2	ENST00000330684.3:c.3616C>T	p.Arg1206Ter	p.R1206*	ENST00000330684	NM_001134407.1	1206	Cga/Tga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	53	244	0	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66242774	66242774	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151302542		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	48	258	0	ENST00000273854.3:c.1798G>A	p.Glu600Lys	p.E600K	ENST00000273854	NM_004439.5	600	Gaa/Aaa																																																																														
FANCC	2176	MSKCC	GRCh37	9	97897778	97897778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	23	343	0	ENST00000289081.3:c.693G>T	p.Lys231Asn	p.K231N	ENST00000289081	NM_000136.2	231	aaG/aaT																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78866552	78866552	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	86	601	0	ENST00000306801.3:c.2125C>T	p.Arg709Ter	p.R709*	ENST00000306801	NM_020761.2	709	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499763	8499763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	75	589	0	ENST00000356435.5:c.2206G>A	p.Val736Met	p.V736M	ENST00000356435		736	Gtg/Atg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790038	40790038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	77	588	0	ENST00000373198.4:c.2693C>T	p.Thr898Met	p.T898M	ENST00000373198	NM_133170.3	898	aCg/aTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857197	9857197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	108	507	1	ENST00000330684.3:c.4204C>T	p.Arg1402Trp	p.R1402W	ENST00000330684	NM_001134407.1	1402	Cgg/Tgg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005375	150005375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	57	513	0	ENST00000253339.5:c.850G>A	p.Val284Ile	p.V284I	ENST00000253339		284	Gta/Ata																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100172	27100172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	61	584	0	ENST00000324856.7:c.3968G>A	p.Arg1323His	p.R1323H	ENST00000324856	NM_006015.4	1323	cGc/cAc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25498386	25498386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	58	524	1	ENST00000264709.3:c.475G>A	p.Glu159Lys	p.E159K	ENST00000264709	NM_175629.2	159	Gaa/Aaa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20483060	20483060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	64	396	0	ENST00000346618.3:c.793G>A	p.Glu265Lys	p.E265K	ENST00000346618	NM_001949.4	265	Gag/Aag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021785	71021785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs112795301		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	34	318	1	ENST00000318789.4:c.1573C>T	p.Arg525Ter	p.R525*	ENST00000318789	NM_032682.5	525	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1293551	1293551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	96	965	1	ENST00000310581.5:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000310581	NM_198253.2	484	Gaa/Aaa																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23539105	23539105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	57	482	0	ENST00000380871.4:c.334G>A	p.Ala112Thr	p.A112T	ENST00000380871	NM_006167.3	112	Gcc/Acc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252865	36252865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	32	372	0	ENST00000300305.3:c.497G>A	p.Arg166Gln	p.R166Q	ENST00000300305		166	cGa/cAa																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647754	2647754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	82	564	0	ENST00000342085.4:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000342085	NM_002613.4	553	Gcc/Acc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105645	11105645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	91	564	1	ENST00000344626.4:c.1561C>T	p.Arg521Trp	p.R521W	ENST00000344626	NM_003072.3	521	Cgg/Tgg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25991736	25991736	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	38	394	0	ENST00000435504.4:c.506C>T	p.Ala169Val	p.A169V	ENST00000435504		169	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112164611	112164611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	49	291	0	ENST00000257430.4:c.1685C>T	p.Thr562Met	p.T562M	ENST00000257430	NM_000038.5	562	aCg/aTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42021428	42021428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	50	434	0	ENST00000219905.7:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000219905	NM_001164273.1	1242	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76937602	76937603	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	28	321	0	ENST00000373344.5:c.3145dupA	p.Ile1049AsnfsTer4	p.I1049Nfs*4	ENST00000373344	NM_000489.3	1049	ata/aAta																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166421	118166421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	72	405	0	ENST00000369448.3:c.931C>T	p.Arg311Cys	p.R311C	ENST00000369448	NM_017709.3	311	Cgc/Tgc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894916	101894916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	26	355	0	ENST00000374994.4:c.469C>T	p.Arg157Ter	p.R157*	ENST00000374994	NM_004612.2	157	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435061	18435061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	21	304	0	ENST00000266497.5:c.46G>A	p.Glu16Lys	p.E16K	ENST00000266497		16	Gaa/Aaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650710	67650710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	96	545	0	ENST00000264010.4:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000264010	NM_006565.3	339	Cgg/Tgg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969848	81969848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	70	563	0	ENST00000359376.3:c.2917G>A	p.Asp973Asn	p.D973N	ENST00000359376	NM_002661.3	973	Gac/Aac																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971393	15971393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	36	492	0	ENST00000268712.3:c.4556C>T	p.Ser1519Leu	p.S1519L	ENST00000268712	NM_006311.3	1519	tCg/tTg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935595	13935595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	55	437	3	ENST00000405192.2:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000405192	NM_001163147.1	421	Gag/Aag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913023	32913023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	51	461	0	ENST00000380152.3:c.4531G>A	p.Glu1511Lys	p.E1511K	ENST00000380152		1511	Gaa/Aaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176662842	176662842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	16	367	0	ENST00000439151.2:c.3817C>T	p.Arg1273Cys	p.R1273C	ENST00000439151	NM_022455.4	1273	Cgc/Tgc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	32	335	0	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	30	324	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	41961330	41961330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	34	454	1	ENST00000219905.7:c.238G>A	p.Asp80Asn	p.D80N	ENST00000219905	NM_001164273.1	80	Gat/Aat																																																																														
RAF1	5894	MSKCC	GRCh37	3	12653551	12653551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140884322		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	71	421	0	ENST00000251849.4:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000251849	NM_002880.3	73	cGa/cAa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94170371	94170371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	22	304	1	ENST00000323929.3:c.1898G>A	p.Arg633Gln	p.R633Q	ENST00000323929	NM_005591.3	633	cGa/cAa																																																																														
CBL	867	MSKCC	GRCh37	11	119169179	119169179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150811339		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	79	552	0	ENST00000264033.4:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000264033	NM_005188.3	788	cGa/cAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056400	180056400	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	90	700	0	ENST00000261937.6:c.844C>T	p.Arg282Ter	p.R282*	ENST00000261937	NM_182925.4	282	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715410	117715410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	15	354	0	ENST00000368508.3:c.1079G>T	p.Arg360Ile	p.R360I	ENST00000368508	NM_002944.2	360	aGa/aTa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40474351	40474351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	55	531	0	ENST00000264657.5:c.2050G>A	p.Gly684Arg	p.G684R	ENST00000264657	NM_139276.2	684	Gga/Aga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123164893	123164893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	38	351	1	ENST00000218089.9:c.206G>A	p.Arg69Gln	p.R69Q	ENST00000218089	NM_001042749.1	69	cGa/cAa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148504761	148504761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	35	494	0	ENST00000320356.2:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000320356	NM_004456.4	745	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70352765	70352765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	130	615	1	ENST00000374080.3:c.4486C>T	p.Arg1496Cys	p.R1496C	ENST00000374080		1496	Cgc/Tgc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211416	98211416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	109	721	2	ENST00000331920.6:c.3739G>A	p.Ala1247Thr	p.A1247T	ENST00000331920	NM_000264.3	1247	Gcg/Acg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523486	106523486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	28	247	0	ENST00000359195.3:c.2638G>A	p.Glu880Lys	p.E880K	ENST00000359195	NM_002649.2	880	Gag/Aag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73333960	73333960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	38	427	0	ENST00000377767.4:c.2850G>T	p.Lys950Asn	p.K950N	ENST00000377767	NM_014953.3	950	aaG/aaT																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39609382	39609382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	63	375	0	ENST00000262039.4:c.1684G>A	p.Glu562Lys	p.E562K	ENST00000262039	NM_002647.2	562	Gaa/Aaa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5238951	5238951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	74	618	3	ENST00000357368.4:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000357368	NM_002850.3	610	Cgg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41564512	41564512	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	40	446	0	ENST00000263253.7:c.3934C>T	p.Arg1312Ter	p.R1312*	ENST00000263253	NM_001429.3	1312	Cga/Tga																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78857238	78857238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	76	655	0	ENST00000306801.3:c.1604C>T	p.Thr535Met	p.T535M	ENST00000306801	NM_020761.2	535	aCg/aTg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467829	50467829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	64	690	0	ENST00000331340.3:c.1064C>T	p.Ala355Val	p.A355V	ENST00000331340	NM_006060.4	355	gCg/gTg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715624	30715624	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	33	280	0	ENST00000359013.4:c.1357G>T	p.Glu453Ter	p.E453*	ENST00000359013	NM_001024847.2	453	Gaa/Taa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168682	32168682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	120	721	1	ENST00000375023.3:c.4241C>T	p.Ala1414Val	p.A1414V	ENST00000375023	NM_004557.3	1414	gCg/gTg																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612735	228612735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	102	739	0	ENST00000366696.1:c.292G>A	p.Glu98Lys	p.E98K	ENST00000366696	NM_003493.2	98	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376627	8376627	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	40	426	0	ENST00000356435.5:c.4486C>T	p.Arg1496Ter	p.R1496*	ENST00000356435		1496	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	66	497	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012219	16012219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	39	366	0	ENST00000268712.3:c.2063G>A	p.Arg688Gln	p.R688Q	ENST00000268712	NM_006311.3	688	cGa/cAa																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612869	228612869	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201904037		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	107	773	0	ENST00000366696.1:c.158G>A	p.Arg53His	p.R53H	ENST00000366696	NM_003493.2	53	cGc/cAc																																																																														
FYN	2534	MSKCC	GRCh37	6	112024169	112024169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	19	373	0	ENST00000368678.4:c.616C>T	p.Arg206Cys	p.R206C	ENST00000368678		206	Cgc/Tgc																																																																														
ALK	238	MSKCC	GRCh37	2	29448419	29448419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140733978		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	69	862	0	ENST00000389048.3:c.3080C>T	p.Pro1027Leu	p.P1027L	ENST00000389048	NM_004304.4	1027	cCg/cTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211461	46211461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	10	200	0	ENST00000334344.6:c.427C>T	p.Arg143Cys	p.R143C	ENST00000334344	NM_152641.2	143	Cgt/Tgt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472565	88472565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	75	498	1	ENST00000360948.2:c.1990G>A	p.Ala664Thr	p.A664T	ENST00000360948	NM_001012338.2	664	Gcc/Acc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273266	198273266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	40	492	0	ENST00000335508.6:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000335508	NM_012433.2	315	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142168390	142168390	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	33	409	1	ENST00000350721.4:c.7816C>T	p.Arg2606Ter	p.R2606*	ENST00000350721	NM_001184.3	2606	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471050	8471050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	33	387	0	ENST00000356435.5:c.3449C>A	p.Ser1150Tyr	p.S1150Y	ENST00000356435		1150	tCt/tAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793432	18793432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187869576		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	19	385	0	ENST00000266497.5:c.4129C>T	p.Arg1377Cys	p.R1377C	ENST00000266497		1377	Cgt/Tgt																																																																														
MGA	23269	MSKCC	GRCh37	15	42050032	42050032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	20	283	0	ENST00000219905.7:c.7186C>T	p.Arg2396Ter	p.R2396*	ENST00000219905	NM_001164273.1	2396	Cga/Tga																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200073	128200073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	60	812	4	ENST00000341105.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000341105	NM_032638.4	411	gCg/gTg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190872	185190872	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	89	674	0	ENST00000265026.3:c.1753C>T	p.Arg585Ter	p.R585*	ENST00000265026	NM_004721.4	585	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1294283	1294283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	104	839	4	ENST00000310581.5:c.718C>T	p.Arg240Cys	p.R240C	ENST00000310581	NM_198253.2	240	Cgt/Tgt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15950304	15950304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	35	589	0	ENST00000268712.3:c.6640C>T	p.Arg2214Cys	p.R2214C	ENST00000268712	NM_006311.3	2214	Cgt/Tgt																																																																														
TET1	80312	MSKCC	GRCh37	10	70426835	70426835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	41	384	0	ENST00000373644.4:c.4495C>A	p.Leu1499Ile	p.L1499I	ENST00000373644	NM_030625.2	1499	Ctt/Att																																																																														
NF2	4771	MSKCC	GRCh37	22	30067929	30067929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	105	505	0	ENST00000338641.4:c.1114G>A	p.Glu372Lys	p.E372K	ENST00000338641	NM_000268.3	372	Gaa/Aaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527808	157527808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	58	478	0	ENST00000346085.5:c.5533C>T	p.Arg1845Cys	p.R1845C	ENST00000346085	NM_020732.3	1845	Cgc/Tgc																																																																														
EP300	2033	MSKCC	GRCh37	22	41564766	41564766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	53	533	0	ENST00000263253.7:c.4067G>A	p.Arg1356Gln	p.R1356Q	ENST00000263253	NM_001429.3	1356	cGa/cAa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222530	2222530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	92	717	1	ENST00000398665.3:c.3362C>T	p.Ser1121Leu	p.S1121L	ENST00000398665	NM_032482.2	1121	tCg/tTg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417883	138417883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	34	430	0	ENST00000289153.2:c.1636C>T	p.Pro546Ser	p.P546S	ENST00000289153	NM_006219.2	546	Ccc/Tcc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	51	751	1	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																														
BARD1	580	MSKCC	GRCh37	2	215595163	215595163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	35	344	0	ENST00000260947.4:c.1973G>A	p.Arg658His	p.R658H	ENST00000260947	NM_000465.2	658	cGc/cAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044541	47044541	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	62	746	0	ENST00000329236.7:c.1804C>T	p.Arg602Ter	p.R602*	ENST00000329236	NM_001204466.1	602	Cga/Tga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3799632	3799632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	20	332	0	ENST00000262367.5:c.3832G>A	p.Glu1278Lys	p.E1278K	ENST00000262367	NM_004380.2	1278	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923650	72923650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	53	713	0	ENST00000268489.5:c.3428G>T	p.Arg1143Met	p.R1143M	ENST00000268489	NM_006885.3	1143	aGg/aTg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724542	162724542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	42	576	2	ENST00000367921.3:c.314G>A	p.Arg105His	p.R105H	ENST00000367921	NM_006182.2	105	cGc/cAc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609744	81609744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201889708		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	47	420	0	ENST00000298171.2:c.1342G>A	p.Val448Ile	p.V448I	ENST00000298171	NM_000369.2	448	Gtc/Atc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706974	117706974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	60	491	0	ENST00000368508.3:c.2176G>A	p.Val726Ile	p.V726I	ENST00000368508	NM_002944.2	726	Gtt/Att																																																																														
MSH3	4437	MSKCC	GRCh37	5	80040392	80040392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	51	430	0	ENST00000265081.6:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000265081	NM_002439.4	574	cGg/cAg																																																																														
ARAF	369	MSKCC	GRCh37	X	47430352	47430352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	80	730	0	ENST00000377045.4:c.1627C>T	p.Arg543Trp	p.R543W	ENST00000377045	NM_001654.4	543	Cgg/Tgg																																																																														
MPL	4352	MSKCC	GRCh37	1	43804304	43804304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	46	603	1	ENST00000372470.3:c.304C>T	p.Arg102Cys	p.R102C	ENST00000372470	NM_005373.2	102	Cgt/Tgt																																																																														
EZH1	2145	MSKCC	GRCh37	17	40857132	40857132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	58	463	2	ENST00000428826.2:c.1909G>A	p.Glu637Lys	p.E637K	ENST00000428826		637	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343805	118343805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	55	474	0	ENST00000534358.1:c.1931G>A	p.Arg644His	p.R644H	ENST00000534358	NM_005933.3	644	cGc/cAc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50358661	50358661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	31	286	0	ENST00000331340.3:c.4G>A	p.Asp2Asn	p.D2N	ENST00000331340	NM_006060.4	2	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509927	187509927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	32	483	0	ENST00000441802.2:c.13586C>T	p.Ala4529Val	p.A4529V	ENST00000441802	NM_005245.3	4529	gCg/gTg																																																																														
NBN	4683	MSKCC	GRCh37	8	90955524	90955524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	37	404	0	ENST00000265433.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000265433	NM_002485.4	714	cGa/cAa																																																																														
HGF	3082	MSKCC	GRCh37	7	81350155	81350155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	32	295	0	ENST00000222390.5:c.1177C>T	p.Arg393Cys	p.R393C	ENST00000222390	NM_000601.4	393	Cgt/Tgt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780563	56780563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	34	430	0	ENST00000337432.4:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000337432	NM_058216.2	193	cGa/cAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851601	134851601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	70	606	0	ENST00000398015.3:c.1007C>T	p.Thr336Met	p.T336M	ENST00000398015	NM_004441.4	336	aCg/aTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984022	2984022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	82	648	0	ENST00000396946.4:c.508C>T	p.Arg170Cys	p.R170C	ENST00000396946	NM_032415.4	170	Cgc/Tgc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115275364	115275364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	51	541	2	ENST00000438362.2:c.1049C>T	p.Thr350Met	p.T350M	ENST00000438362	NM_001242891.1	350	aCg/aTg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468065	50468065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	57	607	0	ENST00000331340.3:c.1300G>A	p.Ala434Thr	p.A434T	ENST00000331340	NM_006060.4	434	Gcc/Acc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562142	21562142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	105	788	0	ENST00000382592.4:c.1777C>T	p.Arg593Cys	p.R593C	ENST00000382592	NM_014572.2	593	Cgc/Tgc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56390280	56390280	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	22	187	1	ENST00000348428.3:c.1019C>T	p.Ala340Val	p.A340V	ENST00000348428	NM_006785.3	340	gCg/gTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257113	16257113	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	33	491	0	ENST00000375759.3:c.4378G>T	p.Glu1460Ter	p.E1460*	ENST00000375759	NM_015001.2	1460	Gaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373313	118373313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	44	405	0	ENST00000534358.1:c.6706G>A	p.Ala2236Thr	p.A2236T	ENST00000534358	NM_005933.3	2236	Gct/Act																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132501	11132501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	107	823	2	ENST00000344626.4:c.2717G>A	p.Arg906His	p.R906H	ENST00000344626	NM_003072.3	906	cGc/cAc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148524346	148524346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	26	299	0	ENST00000320356.2:c.638G>A	p.Arg213His	p.R213H	ENST00000320356	NM_004456.4	213	cGc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879429	151879429	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140631041		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	100	509	0	ENST00000262189.6:c.5516C>T	p.Thr1839Met	p.T1839M	ENST00000262189	NM_170606.2	1839	aCg/aTg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326255	62326255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	95	926	1	ENST00000508582.2:c.3343G>A	p.Asp1115Asn	p.D1115N	ENST00000508582		1115	Gac/Aac																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420285	88420285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199690201		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	76	497	0	ENST00000360948.2:c.2401G>A	p.Asp801Asn	p.D801N	ENST00000360948	NM_001012338.2	801	Gat/Aat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212652834	212652834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	22	367	0	ENST00000342788.4:c.472G>A	p.Ala158Thr	p.A158T	ENST00000342788	NM_005235.2	158	Gca/Aca																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527931	103527931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs4150388		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	39	385	0	ENST00000355739.4:c.3239G>A	p.Gly1080Glu	p.G1080E	ENST00000355739	NM_000123.3	1080	gGa/gAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221667	36221667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	110	875	0	ENST00000222270.7:c.5336G>A	p.Arg1779Gln	p.R1779Q	ENST00000222270	NM_014727.1	1779	cGa/cAa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14024666	14024666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	33	406	0	ENST00000311895.7:c.892C>T	p.Leu298Phe	p.L298F	ENST00000311895	NM_005236.2	298	Ctc/Ttc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16055259	16055259	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	27	337	1	ENST00000268712.3:c.842+1G>A		p.X281_splice	ENST00000268712	NM_006311.3	281																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145741410	145741410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	85	920	2	ENST00000428558.2:c.1093C>T	p.Arg365Trp	p.R365W	ENST00000428558	NM_004260.3	365	Cgg/Tgg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760790	133760790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	85	763	0	ENST00000318560.5:c.3113C>T	p.Ala1038Val	p.A1038V	ENST00000318560	NM_005157.4	1038	gCg/gTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70350054	70350054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	66	485	0	ENST00000374080.3:c.4037G>A	p.Arg1346His	p.R1346H	ENST00000374080		1346	cGc/cAc																																																																														
SYK	6850	MSKCC	GRCh37	9	93606314	93606314	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs16906862		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	92	910	0	ENST00000375746.1:c.134G>A	p.Arg45His	p.R45H	ENST00000375746	NM_001174167.1	45	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199400	16199400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	41	425	0	ENST00000375759.3:c.173G>A	p.Ser58Asn	p.S58N	ENST00000375759	NM_015001.2	58	aGt/aAt																																																																														
MGA	23269	MSKCC	GRCh37	15	41991293	41991293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	23	437	0	ENST00000219905.7:c.2124G>T	p.Lys708Asn	p.K708N	ENST00000219905	NM_001164273.1	708	aaG/aaT																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072541	5072541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	29	359	0	ENST00000381652.3:c.1691G>A	p.Arg564Gln	p.R564Q	ENST00000381652	NM_004972.3	564	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142268984	142268984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	38	341	0	ENST00000350721.4:c.2966G>A	p.Arg989His	p.R989H	ENST00000350721	NM_001184.3	989	cGt/cAt																																																																														
CDH1	999	MSKCC	GRCh37	16	68867355	68867355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	66	481	1	ENST00000261769.5:c.2602C>T	p.Arg868Cys	p.R868C	ENST00000261769	NM_004360.3	868	Cgc/Tgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409089	139409089	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs79782048		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	67	843	1	ENST00000277541.6:c.2080G>A	p.Glu694Lys	p.E694K	ENST00000277541	NM_017617.3	694	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271204	153271204	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	24	246	0	ENST00000281708.4:c.574G>T	p.Glu192Ter	p.E192*	ENST00000281708	NM_033632.3	192	Gaa/Taa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226387	41226387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	59	577	2	ENST00000357654.3:c.4636G>A	p.Asp1546Asn	p.D1546N	ENST00000357654	NM_007294.3	1546	Gat/Aat																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739731	41739731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	91	616	1	ENST00000242208.4:c.242C>T	p.Ala81Val	p.A81V	ENST00000242208	NM_002192.2	81	gCg/gTg																																																																														
CBFB	865	MSKCC	GRCh37	16	67132676	67132676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	34	431	0	ENST00000412916.2:c.559C>T	p.Arg187Cys	p.R187C	ENST00000412916		187	Cgt/Tgt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129983	55129983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	83	559	0	ENST00000257290.5:c.517G>A	p.Asp173Asn	p.D173N	ENST00000257290	NM_006206.4	173	Gac/Aac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946778	71946778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	102	703	1	ENST00000298229.2:c.2719C>T	p.Arg907Ter	p.R907*	ENST00000298229	NM_001567.3	907	Cga/Tga																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461564	138461564	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202220571		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	46	434	0	ENST00000289153.2:c.457C>T	p.Arg153Cys	p.R153C	ENST00000289153	NM_006219.2	153	Cgc/Tgc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665109	182665109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	34	290	0	ENST00000292782.4:c.617G>A	p.Arg206Gln	p.R206Q	ENST00000292782	NM_020640.2	206	cGa/cAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911410	32911410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	16	409	0	ENST00000380152.3:c.2918C>T	p.Ser973Leu	p.S973L	ENST00000380152		973	tCg/tTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38947466	38947466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	28	270	1	ENST00000357387.3:c.4214G>A	p.Arg1405Gln	p.R1405Q	ENST00000357387	NM_152756.3	1405	cGa/cAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054631	5054631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	24	294	0	ENST00000381652.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000381652	NM_004972.3	228	cGa/cAa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59871074	59871074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	20	264	0	ENST00000259008.2:c.1357G>A	p.Ala453Thr	p.A453T	ENST00000259008	NM_032043.2	453	Gct/Act																																																																														
MGA	23269	MSKCC	GRCh37	15	41988382	41988382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	71	459	0	ENST00000219905.7:c.1174G>A	p.Glu392Lys	p.E392K	ENST00000219905	NM_001164273.1	392	Gaa/Aaa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041927	14041927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	44	386	0	ENST00000311895.7:c.2474C>T	p.Ala825Val	p.A825V	ENST00000311895	NM_005236.2	825	gCg/gTg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45651274	45651274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201791685		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	93	629	1	ENST00000407780.3:c.751G>A	p.Glu251Lys	p.E251K	ENST00000407780	NM_001283052.1	251	Gag/Aag																																																																														
AKT1	207	MSKCC	GRCh37	14	105243026	105243026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	100	842	2	ENST00000349310.3:c.257G>A	p.Arg86His	p.R86H	ENST00000349310	NM_001014432.1	86	cGc/cAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030469	47030469	+	intron_variant	Intron	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	60	759	0	ENST00000329236.7:c.201+1572C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916624	178916624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	17	383	1	ENST00000263967.3:c.11G>A	p.Arg4Gln	p.R4Q	ENST00000263967	NM_006218.2	4	cGa/cAa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288743	33288743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	57	569	0	ENST00000374542.5:c.809G>A	p.Arg270His	p.R270H	ENST00000374542	NM_001141970.1	270	cGc/cAc																																																																														
HGF	3082	MSKCC	GRCh37	7	81346631	81346631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	34	364	0	ENST00000222390.5:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000222390	NM_000601.4	441	cGa/cAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298063	11298063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	80	649	0	ENST00000361445.4:c.2045G>A	p.Arg682His	p.R682H	ENST00000361445	NM_004958.3	682	cGc/cAc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244952	41244952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	63	590	0	ENST00000357654.3:c.2596C>T	p.Arg866Cys	p.R866C	ENST00000357654	NM_007294.3	866	Cgc/Tgc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220604	1220604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	70	775	1	ENST00000326873.7:c.622G>A	p.Asp208Asn	p.D208N	ENST00000326873	NM_000455.4	208	Gac/Aac																																																																														
ATR	545	MSKCC	GRCh37	3	142281714	142281714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	40	482	2	ENST00000350721.4:c.530G>A	p.Arg177Gln	p.R177Q	ENST00000350721	NM_001184.3	177	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440121	49440121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	78	730	0	ENST00000301067.7:c.4505C>T	p.Ala1502Val	p.A1502V	ENST00000301067	NM_003482.3	1502	gCc/gTc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288572	33288572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	50	552	0	ENST00000374542.5:c.980G>A	p.Arg327Gln	p.R327Q	ENST00000374542	NM_001141970.1	327	cGa/cAa																																																																														
BTK	695	MSKCC	GRCh37	X	100630190	100630190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	42	489	0	ENST00000308731.7:c.83G>A	p.Arg28His	p.R28H	ENST00000308731	NM_000061.2	28	cGc/cAc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31464432	31464432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	71	596	3	ENST00000344624.3:c.2485C>T	p.Arg829Trp	p.R829W	ENST00000344624		829	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229294	36229294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	53	809	0	ENST00000222270.7:c.7984C>T	p.Arg2662Trp	p.R2662W	ENST00000222270	NM_014727.1	2662	Cgg/Tgg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456254	32456254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	83	739	2	ENST00000332351.3:c.638G>A	p.Arg213His	p.R213H	ENST00000332351	NM_024426.4	213	cGc/cAc																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204737485	204737485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	29	364	0	ENST00000302823.3:c.622G>A	p.Glu208Lys	p.E208K	ENST00000302823	NM_005214.4	208	Gag/Aag																																																																														
STK40	83931	MSKCC	GRCh37	1	36809754	36809754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188394458		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	53	614	1	ENST00000373129.3:c.851G>A	p.Arg284His	p.R284H	ENST00000373129	NM_032017.1	284	cGc/cAc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71008511	71008511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	44	368	1	ENST00000318789.4:c.1921G>A	p.Asp641Asn	p.D641N	ENST00000318789	NM_032682.5	641	Gat/Aat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778371	3778371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	97	774	0	ENST00000262367.5:c.6677C>T	p.Ala2226Val	p.A2226V	ENST00000262367	NM_004380.2	2226	gCg/gTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136198	64136198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	110	764	0	ENST00000334205.4:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000334205	NM_003942.2	453	Gaa/Aaa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61722723	61722723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	41	329	0	ENST00000401558.2:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000401558	NM_003400.3	305	cGa/cAa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515145	31515145	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	43	626	0	ENST00000344624.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000344624		414	Cga/Tga																																																																														
MPL	4352	MSKCC	GRCh37	1	43803863	43803863	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs6087		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	82	625	1	ENST00000372470.3:c.173C>T	p.Ala58Val	p.A58V	ENST00000372470	NM_005373.2	58	gCg/gTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7267523	7267523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	82	539	1	ENST00000302850.5:c.485G>A	p.Arg162His	p.R162H	ENST00000302850	NM_000208.2	162	cGt/cAt																																																																														
PAK1	5058	MSKCC	GRCh37	11	77090968	77090968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	53	419	1	ENST00000356341.3:c.262G>A	p.Gly88Ser	p.G88S	ENST00000356341	NM_002576.4	88	Ggt/Agt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948206	71948206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	112	835	2	ENST00000298229.2:c.2918C>T	p.Ala973Val	p.A973V	ENST00000298229	NM_001567.3	973	gCg/gTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944545	40944545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200852571		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	57	482	0	ENST00000373198.4:c.1957C>T	p.Arg653Trp	p.R653W	ENST00000373198	NM_133170.3	653	Cgg/Tgg																																																																														
ATR	545	MSKCC	GRCh37	3	142272779	142272779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	38	403	0	ENST00000350721.4:c.2420G>A	p.Gly807Glu	p.G807E	ENST00000350721	NM_001184.3	807	gGa/gAa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25457273	25457273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	63	620	1	ENST00000264709.3:c.2614G>T	p.Val872Phe	p.V872F	ENST00000264709	NM_175629.2	872	Gtc/Ttc																																																																														
BARD1	580	MSKCC	GRCh37	2	215593455	215593455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	26	311	0	ENST00000260947.4:c.2279C>T	p.Ser760Leu	p.S760L	ENST00000260947	NM_000465.2	760	tCg/tTg																																																																														
EED	8726	MSKCC	GRCh37	11	85988119	85988119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	23	360	0	ENST00000263360.6:c.1064G>A	p.Arg355Gln	p.R355Q	ENST00000263360	NM_003797.3	355	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118361991	118361991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	22	311	1	ENST00000534358.1:c.4777C>T	p.Arg1593Cys	p.R1593C	ENST00000534358	NM_005933.3	1593	Cgc/Tgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100009	11100009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	87	647	3	ENST00000344626.4:c.1135G>A	p.Ala379Thr	p.A379T	ENST00000344626	NM_003072.3	379	Gca/Aca																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527822	103527822	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	32	360	0	ENST00000355739.4:c.3130G>T	p.Glu1044Ter	p.E1044*	ENST00000355739	NM_000123.3	1044	Gaa/Taa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467988	66467988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	21	288	0	ENST00000273854.3:c.281C>T	p.Ala94Val	p.A94V	ENST00000273854	NM_004439.5	94	gCc/gTc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724599	162724599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	41	541	0	ENST00000367921.3:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000367921	NM_006182.2	124	cGg/cAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912163	32912163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	60	550	0	ENST00000380152.3:c.3671G>A	p.Gly1224Asp	p.G1224D	ENST00000380152		1224	gGc/gAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678002	117678002	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	42	392	1	ENST00000368508.3:c.3931C>T	p.Arg1311Ter	p.R1311*	ENST00000368508	NM_002944.2	1311	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29483129	29483129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	30	354	0	ENST00000358273.4:c.189G>T	p.Lys63Asn	p.K63N	ENST00000358273	NM_001042492.2	63	aaG/aaT																																																																														
SDHA	6389	MSKCC	GRCh37	5	224548	224548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	52	436	0	ENST00000264932.6:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000264932	NM_004168.2	75	cGa/cAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229343	36229343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	79	644	0	ENST00000222270.7:c.8033G>A	p.Arg2678His	p.R2678H	ENST00000222270	NM_014727.1	2678	cGc/cAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29684049	29684049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	39	502	0	ENST00000358273.4:c.7810C>A	p.Leu2604Ile	p.L2604I	ENST00000358273	NM_001042492.2	2604	Ctc/Atc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060638	38060638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	113	838	1	ENST00000250448.2:c.1351G>A	p.Glu451Lys	p.E451K	ENST00000250448	NM_004496.3	451	Gag/Aag																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566300	141566300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	87	482	0	ENST00000220592.5:c.1112C>T	p.Ser371Leu	p.S371L	ENST00000220592	NM_012154.3	371	tCg/tTg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741343	17741343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	66	741	0	ENST00000250003.3:c.14C>T	p.Ser5Leu	p.S5L	ENST00000250003	NM_002478.4	5	tCg/tTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68989689	68989689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	59	478	0	ENST00000288368.4:c.1627G>A	p.Gly543Arg	p.G543R	ENST00000288368	NM_024870.2	543	Gga/Aga																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041882	14041882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	57	413	0	ENST00000311895.7:c.2429C>T	p.Ala810Val	p.A810V	ENST00000311895	NM_005236.2	810	gCg/gTg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911502	131911502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	39	396	0	ENST00000265335.6:c.247C>T	p.Arg83Cys	p.R83C	ENST00000265335		83	Cgt/Tgt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56415021	56415021	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	51	444	0	ENST00000348428.3:c.2422A>C	p.Thr808Pro	p.T808P	ENST00000348428	NM_006785.3	808	Act/Cct																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733527	85733527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200837308		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	73	474	0	ENST00000370580.1:c.485C>T	p.Thr162Met	p.T162M	ENST00000370580	NM_003921.4	162	aCg/aTg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73340168	73340168	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	19	278	0	ENST00000377767.4:c.1912C>T	p.Arg638Ter	p.R638*	ENST00000377767	NM_014953.3	638	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438192	49438192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	62	520	0	ENST00000301067.7:c.5077C>T	p.Arg1693Trp	p.R1693W	ENST00000301067	NM_003482.3	1693	Cgg/Tgg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467810	66467810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	19	331	0	ENST00000273854.3:c.459G>A	p.Met153Ile	p.M153I	ENST00000273854	NM_004439.5	153	atG/atA																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245390	41245390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	52	578	0	ENST00000357654.3:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000357654	NM_007294.3	720	Gaa/Aaa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40460232	40460232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	86	614	0	ENST00000345506.4:c.1943C>T	p.Thr648Met	p.T648M	ENST00000345506	NM_003152.3	648	aCg/aTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31409427	31409427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	50	371	0	ENST00000344624.3:c.3680C>T	p.Ala1227Val	p.A1227V	ENST00000344624		1227	gCg/gTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189604293	189604293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	40	466	0	ENST00000264731.3:c.1460G>A	p.Arg487His	p.R487H	ENST00000264731	NM_003722.4	487	cGc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349009	70349009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	81	624	1	ENST00000374080.3:c.3521G>A	p.Arg1174His	p.R1174H	ENST00000374080		1174	cGc/cAc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39241973	39241973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	36	271	1	ENST00000402219.2:c.1873C>T	p.Arg625Trp	p.R625W	ENST00000402219	NM_005633.3	625	Cgg/Tgg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924292	112924292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	80	643	0	ENST00000351677.2:c.1238G>T	p.Arg413Ile	p.R413I	ENST00000351677	NM_002834.3	413	aGa/aTa																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656980	45656980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	90	646	1	ENST00000407780.3:c.176C>T	p.Ser59Leu	p.S59L	ENST00000407780	NM_001283052.1	59	tCg/tTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140482826	140482826	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	66	538	0	ENST00000288602.6:c.1309C>T	p.Arg437Ter	p.R437*	ENST00000288602	NM_004333.4	437	Cga/Tga																																																																														
PARP1	142	MSKCC	GRCh37	1	226552729	226552729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	53	465	0	ENST00000366794.5:c.2632C>T	p.Arg878Trp	p.R878W	ENST00000366794	NM_001618.3	878	Cgg/Tgg																																																																														
MSH3	4437	MSKCC	GRCh37	5	80071522	80071522	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	28	289	0	ENST00000265081.6:c.2263G>T	p.Glu755Ter	p.E755*	ENST00000265081	NM_002439.4	755	Gaa/Taa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262663	16262663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	61	539	1	ENST00000375759.3:c.9928G>A	p.Asp3310Asn	p.D3310N	ENST00000375759	NM_015001.2	3310	Gac/Aac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47061267	47061267	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	50	387	0	ENST00000409792.3:c.7414G>T	p.Glu2472Ter	p.E2472*	ENST00000409792	NM_014159.6	2472	Gaa/Taa																																																																														
BCL6	604	MSKCC	GRCh37	3	187442757	187442757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	76	569	3	ENST00000232014.4:c.1949G>A	p.Arg650Gln	p.R650Q	ENST00000232014	NM_001130845.1	650	cGa/cAa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554341	63554341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	45	643	0	ENST00000307078.5:c.398C>T	p.Ala133Val	p.A133V	ENST00000307078	NM_004655.3	133	gCg/gTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300192	15300192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	59	665	1	ENST00000263388.2:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000263388	NM_000435.2	362	Gag/Aag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40476762	40476762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	61	631	1	ENST00000264657.5:c.1567G>A	p.Glu523Lys	p.E523K	ENST00000264657	NM_139276.2	523	Gag/Aag																																																																														
REL	5966	MSKCC	GRCh37	2	61144108	61144108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	31	442	0	ENST00000295025.8:c.491C>T	p.Thr164Met	p.T164M	ENST00000295025	NM_002908.2	164	aCg/aTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11189004	11189004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	50	385	0	ENST00000361445.4:c.5719C>T	p.Leu1907Phe	p.L1907F	ENST00000361445	NM_004958.3	1907	Ctc/Ttc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257403	16257403	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	33	489	0	ENST00000375759.3:c.4668T>G	p.Ile1556Met	p.I1556M	ENST00000375759	NM_015001.2	1556	atT/atG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094462	27094462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	65	492	0	ENST00000324856.7:c.3170C>T	p.Ser1057Phe	p.S1057F	ENST00000324856	NM_006015.4	1057	tCt/tTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105874	27105874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	68	528	1	ENST00000324856.7:c.5485G>T	p.Asp1829Tyr	p.D1829Y	ENST00000324856	NM_006015.4	1829	Gat/Tat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107084	27107084	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142878055		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	59	589	0	ENST00000324856.7:c.6695G>A	p.Arg2232Gln	p.R2232Q	ENST00000324856	NM_006015.4	2232	cGg/cAg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935262	36935262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	48	731	0	ENST00000361632.4:c.1465C>A	p.Leu489Met	p.L489M	ENST00000361632		489	Ctg/Atg																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39321507	39321507	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	46	457	0	ENST00000373001.3:c.514A>C	p.Asn172His	p.N172H	ENST00000373001	NM_022157.3	172	Aat/Cat																																																																														
JAK1	3716	MSKCC	GRCh37	1	65323396	65323396	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	80	624	1	ENST00000342505.4:c.1401G>A	p.Trp467Ter	p.W467*	ENST00000342505	NM_002227.2	467	tgG/tgA																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748169	72748169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	29	390	0	ENST00000357731.5:c.9G>T	p.Met3Ile	p.M3I	ENST00000357731	NM_173808.2	3	atG/atT																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733449	85733449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	39	451	0	ENST00000370580.1:c.563C>A	p.Ser188Tyr	p.S188Y	ENST00000370580	NM_003921.4	188	tCt/tAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256557	115256557	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	48	446	0	ENST00000369535.4:c.154T>G	p.Leu52Val	p.L52V	ENST00000369535	NM_002524.4	52	Ttg/Gtg																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166560	118166560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	43	409	0	ENST00000369448.3:c.1070A>G	p.Tyr357Cys	p.Y357C	ENST00000369448	NM_017709.3	357	tAc/tGc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459182	120459182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	58	593	0	ENST00000256646.2:c.6163C>T	p.His2055Tyr	p.H2055Y	ENST00000256646	NM_024408.3	2055	Cac/Tac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459289	120459289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201446896		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	33	470	0	ENST00000256646.2:c.6056G>A	p.Arg2019Gln	p.R2019Q	ENST00000256646	NM_024408.3	2019	cGg/cAg																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874173	155874173	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	49	531	0	ENST00000368323.3:c.358C>T	p.Arg120Ter	p.R120*	ENST00000368323	NM_006912.5	120	Cga/Tga																																																																														
NUF2	83540	MSKCC	GRCh37	1	163315568	163315568	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	26	360	0	ENST00000271452.3:c.908T>G	p.Leu303Arg	p.L303R	ENST00000271452	NM_145697.2	303	cTt/cGt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193094334	193094334	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	39	295	0	ENST00000367435.3:c.224T>C	p.Val75Ala	p.V75A	ENST00000367435	NM_024529.4	75	gTc/gCc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193119495	193119495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	39	279	0	ENST00000367435.3:c.890G>T	p.Arg297Ile	p.R297I	ENST00000367435	NM_024529.4	297	aGa/aTa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852307	63852307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	70	666	1	ENST00000279873.7:c.3085C>T	p.Arg1029Trp	p.R1029W	ENST00000279873	NM_032199.2	1029	Cgg/Tgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70360781	70360781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	21	239	0	ENST00000373644.4:c.1958A>G	p.Lys653Arg	p.K653R	ENST00000373644	NM_030625.2	653	aAa/aGa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711944	89711944	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	36	458	0	ENST00000371953.3:c.562T>G	p.Tyr188Asp	p.Y188D	ENST00000371953	NM_000314.4	188	Tat/Gat																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14300926	14300926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	23	215	2	ENST00000256196.4:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000256196		191	cGg/cAg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741450	17741450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	92	683	1	ENST00000250003.3:c.121C>T	p.Arg41Cys	p.R41C	ENST00000250003	NM_002478.4	41	Cgc/Tgc																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518087	69518087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	54	757	0	ENST00000294312.3:c.278A>C	p.Lys93Thr	p.K93T	ENST00000294312	NM_005117.2	93	aAg/aCg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942063	71942063	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	92	741	0	ENST00000298229.2:c.1327A>G	p.Thr443Ala	p.T443A	ENST00000298229	NM_001567.3	443	Aca/Gca																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948218	71948218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	130	867	0	ENST00000298229.2:c.2930C>A	p.Pro977His	p.P977H	ENST00000298229	NM_001567.3	977	cCc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948500	71948500	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs141033838		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	69	909	1	ENST00000298229.2:c.3212C>A	p.Pro1071His	p.P1071H	ENST00000298229	NM_001567.3	1071	cCt/cAt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94192626	94192626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	57	548	0	ENST00000323929.3:c.1448G>A	p.Arg483Gln	p.R483Q	ENST00000323929	NM_005591.3	483	cGa/cAa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102207715	102207715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	21	347	0	ENST00000263464.3:c.1697C>T	p.Ser566Phe	p.S566F	ENST00000263464	NM_001165.4	566	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362633	118362633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	30	426	1	ENST00000534358.1:c.4994G>A	p.Arg1665His	p.R1665H	ENST00000534358	NM_005933.3	1665	cGc/cAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373862	118373862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	21	327	0	ENST00000534358.1:c.7255G>A	p.Glu2419Lys	p.E2419K	ENST00000534358	NM_005933.3	2419	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374586	118374586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	30	413	0	ENST00000534358.1:c.7979G>T	p.Gly2660Val	p.G2660V	ENST00000534358	NM_005933.3	2660	gGc/gTc																																																																														
CBL	867	MSKCC	GRCh37	11	119158628	119158628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	43	512	0	ENST00000264033.4:c.2008G>T	p.Ala670Ser	p.A670S	ENST00000264033	NM_005188.3	670	Gcc/Tcc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719968	18719968	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	18	375	0	ENST00000266497.5:c.3865A>C	p.Asn1289His	p.N1289H	ENST00000266497		1289	Aat/Cat																																																																														
RECQL	5965	MSKCC	GRCh37	12	21627778	21627778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	42	496	0	ENST00000421138.2:c.1352G>A	p.Ser451Asn	p.S451N	ENST00000421138		451	aGc/aAc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243541	46243541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	33	311	0	ENST00000334344.6:c.1894C>T	p.Pro632Ser	p.P632S	ENST00000334344	NM_152641.2	632	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435191	49435191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	41	611	1	ENST00000301067.7:c.6362C>T	p.Ala2121Val	p.A2121V	ENST00000301067	NM_003482.3	2121	gCc/gTc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416841	121416841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	95	822	0	ENST00000257555.6:c.270G>T	p.Glu90Asp	p.E90D	ENST00000257555		90	gaG/gaT																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562126	21562126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	59	801	0	ENST00000382592.4:c.1793C>T	p.Ser598Leu	p.S598L	ENST00000382592	NM_014572.2	598	tCg/tTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21620119	21620119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	86	577	0	ENST00000382592.4:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000382592	NM_014572.2	16	cGg/cAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907387	32907387	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	25	364	0	ENST00000380152.3:c.1772T>G	p.Ile591Ser	p.I591S	ENST00000380152		591	aTt/aGt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913326	32913326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	24	470	0	ENST00000380152.3:c.4834C>T	p.Pro1612Ser	p.P1612S	ENST00000380152		1612	Cca/Tca																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281425	49281425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	64	630	0	ENST00000282018.3:c.472C>A	p.Leu158Ile	p.L158I	ENST00000282018	NM_020377.2	158	Ctc/Atc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061507	38061507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	38	547	1	ENST00000250448.2:c.482C>T	p.Thr161Met	p.T161M	ENST00000250448	NM_004496.3	161	aCg/aTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562869	95562869	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	24	330	0	ENST00000343455.3:c.4388T>G	p.Phe1463Cys	p.F1463C	ENST00000343455	NM_177438.2	1463	tTt/tGt																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40678668	40678668	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	53	424	0	ENST00000249776.8:c.410A>C	p.Lys137Thr	p.K137T	ENST00000249776	NM_033286.3	137	aAa/aCa																																																																														
MGA	23269	MSKCC	GRCh37	15	42046685	42046685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	41	416	0	ENST00000219905.7:c.7059G>T	p.Glu2353Asp	p.E2353D	ENST00000219905	NM_001164273.1	2353	gaG/gaT																																																																														
MGA	23269	MSKCC	GRCh37	15	42058521	42058521	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	38	393	0	ENST00000219905.7:c.8241T>G	p.Ile2747Met	p.I2747M	ENST00000219905	NM_001164273.1	2747	atT/atG																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714197	43714197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	58	745	0	ENST00000382044.4:c.3956G>A	p.Arg1319His	p.R1319H	ENST00000382044	NM_001141980.1	1319	cGc/cAc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66735658	66735658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	27	404	0	ENST00000307102.5:c.479G>A	p.Arg160Lys	p.R160K	ENST00000307102	NM_002755.3	160	aGa/aAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483946	88483946	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	70	585	1	ENST00000360948.2:c.1624C>T	p.Arg542Ter	p.R542*	ENST00000360948	NM_001012338.2	542	Cga/Tga																																																																														
BLM	641	MSKCC	GRCh37	15	91306235	91306235	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	27	350	0	ENST00000355112.3:c.1922A>G	p.His641Arg	p.H641R	ENST00000355112	NM_000057.2	641	cAt/cGt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500490	99500490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	92	784	0	ENST00000268035.6:c.3923C>T	p.Ser1308Leu	p.S1308L	ENST00000268035	NM_000875.3	1308	tCg/tTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3860755	3860755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	53	409	0	ENST00000262367.5:c.824C>A	p.Pro275Gln	p.P275Q	ENST00000262367	NM_004380.2	275	cCa/cAa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632692	23632692	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	29	359	0	ENST00000261584.4:c.3104T>C	p.Ile1035Thr	p.I1035T	ENST00000261584	NM_024675.3	1035	aTt/aCt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830716	72830716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	67	587	0	ENST00000268489.5:c.5865G>T	p.Glu1955Asp	p.E1955D	ENST00000268489	NM_006885.3	1955	gaG/gaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993866	72993866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	68	609	0	ENST00000268489.5:c.179G>A	p.Arg60His	p.R60H	ENST00000268489	NM_006885.3	60	cGc/cAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346097	89346097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	21	290	0	ENST00000301030.4:c.6853G>A	p.Ala2285Thr	p.A2285T	ENST00000301030	NM_001256183.1	2285	Gca/Aca																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346706	89346706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	85	640	0	ENST00000301030.4:c.6244G>A	p.Glu2082Lys	p.E2082K	ENST00000301030	NM_001256183.1	2082	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348652	89348652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	60	610	0	ENST00000301030.4:c.4298C>T	p.Ser1433Phe	p.S1433F	ENST00000301030	NM_001256183.1	1433	tCc/tTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348938	89348938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	106	746	2	ENST00000301030.4:c.4012G>A	p.Ala1338Thr	p.A1338T	ENST00000301030	NM_001256183.1	1338	Gcc/Acc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351129	89351129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	94	639	0	ENST00000301030.4:c.1821G>T	p.Lys607Asn	p.K607N	ENST00000301030	NM_001256183.1	607	aaG/aaT																																																																														
RARA	5914	MSKCC	GRCh37	17	38510665	38510665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	104	687	3	ENST00000254066.5:c.919G>A	p.Asp307Asn	p.D307N	ENST00000254066	NM_000964.3	307	Gac/Aac																																																																														
STAT3	6774	MSKCC	GRCh37	17	40474488	40474488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	31	415	0	ENST00000264657.5:c.1913A>G	p.Glu638Gly	p.E638G	ENST00000264657	NM_139276.2	638	gAa/gGa																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804288	46804288	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	80	707	0	ENST00000290295.7:c.719T>G	p.Phe240Cys	p.F240C	ENST00000290295	NM_006361.5	240	tTc/tGc																																																																														
YES1	7525	MSKCC	GRCh37	18	736933	736933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	38	401	0	ENST00000314574.4:c.1166G>T	p.Arg389Ile	p.R389I	ENST00000314574	NM_005433.3	389	aGa/aTa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372044	45372044	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	34	388	0	ENST00000262160.6:c.1125A>C	p.Lys375Asn	p.K375N	ENST00000262160	NM_005901.5	375	aaA/aaC																																																																														
INSR	3643	MSKCC	GRCh37	19	7168013	7168013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	42	545	1	ENST00000302850.5:c.1576G>T	p.Asp526Tyr	p.D526Y	ENST00000302850	NM_000208.2	526	Gac/Tac																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248650	10248650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	82	644	0	ENST00000340748.4:c.4103G>A	p.Arg1368Gln	p.R1368Q	ENST00000340748		1368	cGa/cAa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097009	11097009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	96	841	0	ENST00000344626.4:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000344626	NM_003072.3	167	cGg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170435	11170435	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	70	664	0	ENST00000344626.4:c.4642G>T	p.Glu1548Ter	p.E1548*	ENST00000344626	NM_003072.3	1548	Gaa/Taa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355552	15355552	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	53	653	3	ENST00000263377.2:c.2180del	p.Lys727ArgfsTer67	p.K727Rfs*67	ENST00000263377	NM_058243.2	727	aAg/ag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36217173	36217173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	67	774	0	ENST00000222270.7:c.3922G>A	p.Ala1308Thr	p.A1308T	ENST00000222270	NM_014727.1	1308	Gca/Aca																																																																														
AXL	558	MSKCC	GRCh37	19	41754660	41754660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	99	676	1	ENST00000301178.4:c.1646C>A	p.Ala549Asp	p.A549D	ENST00000301178	NM_021913.4	549	gCt/gAt																																																																														
CD79A	973	MSKCC	GRCh37	19	42383648	42383648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	48	654	4	ENST00000221972.3:c.423G>T	p.Lys141Asn	p.K141N	ENST00000221972	NM_021601.3	141	aaG/aaT																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910390	50910390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	100	795	1	ENST00000440232.2:c.1645C>T	p.Arg549Cys	p.R549C	ENST00000440232	NM_002691.3	549	Cgt/Tgt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607501	46607501	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	121	820	0	ENST00000263734.3:c.1690T>G	p.Phe564Val	p.F564V	ENST00000263734	NM_001430.4	564	Ttc/Gtc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47601145	47601145	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	69	520	0	ENST00000263735.4:c.383A>G	p.Asp128Gly	p.D128G	ENST00000263735	NM_002354.2	128	gAc/gGc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026315	48026315	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	49	401	0	ENST00000234420.5:c.1193T>C	p.Val398Ala	p.V398A	ENST00000234420	NM_000179.2	398	gTg/gCg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028136	48028136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	34	342	0	ENST00000234420.5:c.3014G>T	p.Arg1005Leu	p.R1005L	ENST00000234420	NM_000179.2	1005	cGa/cTa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61706101	61706101	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	34	410	0	ENST00000401558.2:c.3070G>A	p.Glu1024Lys	p.E1024K	ENST00000401558	NM_003400.3	1024	Gaa/Aaa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198269888	198269888	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	26	318	0	ENST00000335508.6:c.1451A>C	p.Glu484Ala	p.E484A	ENST00000335508	NM_012433.2	484	gAa/gCa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209108158	209108158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	32	328	0	ENST00000345146.2:c.691T>C	p.Tyr231His	p.Y231H	ENST00000345146	NM_005896.2	231	Tat/Cat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251826	212251826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	32	298	0	ENST00000342788.4:c.3233C>T	p.Ser1078Phe	p.S1078F	ENST00000342788	NM_005235.2	1078	tCt/tTt																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319662	62319662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	71	727	1	ENST00000508582.2:c.1717G>A	p.Ala573Thr	p.A573T	ENST00000508582		573	Gcc/Acc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513247	44513247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	75	475	0	ENST00000291552.4:c.688C>T	p.Arg230Trp	p.R230W	ENST00000291552	NM_006758.2	230	Cgg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41573252	41573252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	81	787	0	ENST00000263253.7:c.5537G>A	p.Gly1846Asp	p.G1846D	ENST00000263253	NM_001429.3	1846	gGc/gAc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12660099	12660099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145611571		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	54	450	1	ENST00000251849.4:c.122G>A	p.Arg41Gln	p.R41Q	ENST00000251849	NM_002880.3	41	cGg/cAg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067204	37067204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	57	422	0	ENST00000231790.2:c.1115C>T	p.Ser372Phe	p.S372F	ENST00000231790	NM_000249.3	372	tCt/tTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165390	47165390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	29	426	0	ENST00000409792.3:c.736G>A	p.Val246Ile	p.V246I	ENST00000409792	NM_014159.6	246	Gta/Ata																																																																														
MST1	4485	MSKCC	GRCh37	3	49725025	49725025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	97	733	0	ENST00000449682.2:c.319C>T	p.Arg107Trp	p.R107W	ENST00000449682	NM_020998.3	107	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917481	178917481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	17	249	0	ENST00000263967.3:c.356T>C	p.Phe119Ser	p.F119S	ENST00000263967	NM_006218.2	119	tTt/tCt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430831	181430831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	58	846	0	ENST00000325404.1:c.683C>T	p.Ser228Leu	p.S228L	ENST00000325404	NM_003106.3	228	tCg/tTg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156631	55156631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	73	652	0	ENST00000257290.5:c.3032G>A	p.Arg1011Lys	p.R1011K	ENST00000257290	NM_006206.4	1011	aGa/aAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55599269	55599269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	27	421	0	ENST00000288135.5:c.2395C>A	p.Leu799Ile	p.L799I	ENST00000288135	NM_000222.2	799	Ctc/Atc																																																																														
KDR	3791	MSKCC	GRCh37	4	55948775	55948775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	23	389	0	ENST00000263923.4:c.3690G>T	p.Lys1230Asn	p.K1230N	ENST00000263923	NM_002253.2	1230	aaG/aaT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201703	66201703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	46	453	0	ENST00000273854.3:c.2799C>G	p.Asp933Glu	p.D933E	ENST00000273854	NM_004439.5	933	gaC/gaG																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213825	66213825	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	41	415	0	ENST00000273854.3:c.2605T>C	p.Trp869Arg	p.W869R	ENST00000273854	NM_004439.5	869	Tgg/Cgg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286185	66286185	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	16	338	0	ENST00000273854.3:c.1501G>T	p.Glu501Ter	p.E501*	ENST00000273854	NM_004439.5	501	Gag/Tag																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159134	143159134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	20	313	0	ENST00000262992.4:c.719G>T	p.Arg240Ile	p.R240I	ENST00000262992	NM_001101669.1	240	aGa/aTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539295	187539295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	35	436	0	ENST00000441802.2:c.8445G>T	p.Glu2815Asp	p.E2815D	ENST00000441802	NM_005245.3	2815	gaG/gaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541619	187541619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	51	366	0	ENST00000441802.2:c.6121C>T	p.Arg2041Cys	p.R2041C	ENST00000441802	NM_005245.3	2041	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628301	187628301	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	41	564	0	ENST00000441802.2:c.2681A>C	p.Lys894Thr	p.K894T	ENST00000441802	NM_005245.3	894	aAg/aCg																																																																														
SDHA	6389	MSKCC	GRCh37	5	228428	228428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	46	330	0	ENST00000264932.6:c.750G>T	p.Lys250Asn	p.K250N	ENST00000264932	NM_004168.2	250	aaG/aaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1254528	1254528	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	105	865	0	ENST00000310581.5:c.3250C>T	p.Arg1084Ter	p.R1084*	ENST00000310581	NM_198253.2	1084	Cga/Tga																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31431749	31431749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	58	424	0	ENST00000344624.3:c.3079G>A	p.Gly1027Arg	p.G1027R	ENST00000344624		1027	Ggg/Agg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31508822	31508822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	84	465	0	ENST00000344624.3:c.1493A>G	p.Asp498Gly	p.D498G	ENST00000344624		498	gAc/gGc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38947452	38947452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	24	290	0	ENST00000357387.3:c.4228C>T	p.Arg1410Trp	p.R1410W	ENST00000357387	NM_152756.3	1410	Cgg/Tgg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38996934	38996934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	30	424	2	ENST00000357387.3:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000357387	NM_152756.3	148	cGa/cAa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80168989	80168989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	50	539	0	ENST00000265081.6:c.3185G>A	p.Gly1062Glu	p.G1062E	ENST00000265081	NM_002439.4	1062	gGa/gAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628407	86628407	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	20	303	0	ENST00000274376.6:c.776T>C	p.Val259Ala	p.V259A	ENST00000274376	NM_002890.2	259	gTt/gCt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86633801	86633801	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	21	209	1	ENST00000274376.6:c.910G>T	p.Gly304Ter	p.G304*	ENST00000274376	NM_002890.2	304	Gga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86665647	86665647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	16	264	0	ENST00000274376.6:c.1628T>C	p.Ile543Thr	p.I543T	ENST00000274376	NM_002890.2	543	aTa/aCa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923737	131923737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	20	334	0	ENST00000265335.6:c.1007C>A	p.Ser336Tyr	p.S336Y	ENST00000265335		336	tCt/tAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131953915	131953915	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	37	309	0	ENST00000265335.6:c.3318A>C	p.Glu1106Asp	p.E1106D	ENST00000265335		1106	gaA/gaC																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638456	176638456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	80	644	0	ENST00000439151.2:c.3056G>T	p.Arg1019Leu	p.R1019L	ENST00000439151	NM_022455.4	1019	cGc/cTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672576	30672576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	80	566	1	ENST00000376406.3:c.4384G>T	p.Asp1462Tyr	p.D1462Y	ENST00000376406	NM_014641.2	1462	Gac/Tac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680772	30680772	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	38	519	0	ENST00000376406.3:c.947T>C	p.Val316Ala	p.V316A	ENST00000376406	NM_014641.2	316	gTc/gCc																																																																														
STK19	8859	MSKCC	GRCh37	6	31946728	31946728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	48	551	1	ENST00000375331.2:c.616G>A	p.Asp206Asn	p.D206N	ENST00000375331	NM_004197.1	206	Gac/Aac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163332	32163332	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	84	781	1	ENST00000375023.3:c.5894T>G	p.Ile1965Ser	p.I1965S	ENST00000375023	NM_004557.3	1965	aTt/aGt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169074	32169074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	101	747	1	ENST00000375023.3:c.3959C>A	p.Ser1320Tyr	p.S1320Y	ENST00000375023	NM_004557.3	1320	tCc/tAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187512	32187512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	58	702	0	ENST00000375023.3:c.1367C>A	p.Pro456His	p.P456H	ENST00000375023	NM_004557.3	456	cCt/cAt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553380	106553380	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	69	461	0	ENST00000369096.4:c.1345A>C	p.Asn449His	p.N449H	ENST00000369096	NM_001198.3	449	Aat/Cat																																																																														
SESN1	27244	MSKCC	GRCh37	6	109415114	109415114	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	35	701	0	ENST00000436639.2:c.163A>C	p.Asn55His	p.N55H	ENST00000436639	NM_014454.2	55	Aat/Cat																																																																														
FYN	2534	MSKCC	GRCh37	6	112024234	112024234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	18	276	0	ENST00000368678.4:c.551C>T	p.Ala184Val	p.A184V	ENST00000368678		184	gCc/gTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631428	117631428	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	25	362	0	ENST00000368508.3:c.6250A>C	p.Asn2084His	p.N2084H	ENST00000368508	NM_002944.2	2084	Aat/Cat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642540	117642540	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	33	548	0	ENST00000368508.3:c.5659A>C	p.Lys1887Gln	p.K1887Q	ENST00000368508	NM_002944.2	1887	Aag/Cag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005386	150005386	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs190144122		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	36	536	0	ENST00000253339.5:c.839A>G	p.Asn280Ser	p.N280S	ENST00000253339		280	aAc/aGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099767	157099767	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	32	318	0	ENST00000346085.5:c.704G>T	p.Gly235Val	p.G235V	ENST00000346085	NM_020732.3	235	gGc/gTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521980	157521980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	38	655	0	ENST00000346085.5:c.4252C>T	p.Pro1418Ser	p.P1418S	ENST00000346085	NM_020732.3	1418	Ccc/Tcc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157525017	157525017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	39	319	0	ENST00000346085.5:c.4912C>T	p.Arg1638Cys	p.R1638C	ENST00000346085	NM_020732.3	1638	Cgt/Tgt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528615	157528615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	41	606	0	ENST00000346085.5:c.6340A>G	p.Thr2114Ala	p.T2114A	ENST00000346085	NM_020732.3	2114	Aca/Gca																																																																														
PARK2	0	MSKCC	GRCh37	6	162394368	162394368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	44	409	1	ENST00000366898.1:c.700C>T	p.Arg234Trp	p.R234W	ENST00000366898	NM_004562.2	234	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2977616	2977616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	106	655	0	ENST00000396946.4:c.1068G>T	p.Lys356Asn	p.K356N	ENST00000396946	NM_032415.4	356	aaG/aaT																																																																														
RAC1	5879	MSKCC	GRCh37	7	6439761	6439761	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	32	400	0	ENST00000356142.4:c.287T>C	p.Val96Ala	p.V96A	ENST00000356142	NM_018890.3	96	gTg/gCg																																																																														
ETV1	2115	MSKCC	GRCh37	7	14027729	14027729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	22	322	0	ENST00000405192.2:c.115C>A	p.Leu39Met	p.L39M	ENST00000405192	NM_001163147.1	39	Ctg/Atg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739633	41739633	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	35	446	0	ENST00000242208.4:c.340A>C	p.Asn114His	p.N114H	ENST00000242208	NM_002192.2	114	Aat/Cat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259431	55259431	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	64	446	0	ENST00000275493.2:c.2489A>G	p.Asp830Gly	p.D830G	ENST00000275493	NM_005228.3	830	gAc/gGc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508205	106508205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	61	445	0	ENST00000359195.3:c.199G>A	p.Val67Met	p.V67M	ENST00000359195	NM_002649.2	67	Gtg/Atg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520054	106520054	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	15	302	0	ENST00000359195.3:c.2482A>C	p.Ile828Leu	p.I828L	ENST00000359195	NM_002649.2	828	Att/Ctt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106524625	106524625	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	13	287	0	ENST00000359195.3:c.2786T>C	p.Val929Ala	p.V929A	ENST00000359195	NM_002649.2	929	gTt/gCt																																																																														
MET	4233	MSKCC	GRCh37	7	116422060	116422061	+	missense_variant	Missense_Mutation	DNP	CT	CT	TG			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	30	374	0	ENST00000397752.3:c.3541_3542delinsTG	p.Leu1181Cys	p.L1181C	ENST00000397752	NM_000245.2	1181	CTt/TGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140494258	140494258	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	45	653	0	ENST00000288602.6:c.990T>G	p.Ile330Met	p.I330M	ENST00000288602	NM_004333.4	330	atT/atG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836278	151836278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	80	534	0	ENST00000262189.6:c.14527C>T	p.Pro4843Ser	p.P4843S	ENST00000262189	NM_170606.2	4843	Ccc/Tcc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38272325	38272325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	77	637	0	ENST00000425967.3:c.2042A>G	p.His681Arg	p.H681R	ENST00000425967	NM_001174067.1	681	cAc/cGc																																																																														
LYN	4067	MSKCC	GRCh37	8	56860185	56860185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	56	490	0	ENST00000519728.1:c.187G>A	p.Glu63Lys	p.E63K	ENST00000519728	NM_002350.3	63	Gaa/Aaa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5064942	5064942	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	34	385	0	ENST00000381652.3:c.1116T>G	p.Tyr372Ter	p.Y372*	ENST00000381652	NM_004972.3	372	taT/taG																																																																														
JAK2	3717	MSKCC	GRCh37	9	5077513	5077513	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	44	363	0	ENST00000381652.3:c.1925A>C	p.Lys642Thr	p.K642T	ENST00000381652	NM_004972.3	642	aAa/aCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8497268	8497268	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	30	279	0	ENST00000356435.5:c.2323T>C	p.Trp775Arg	p.W775R	ENST00000356435		775	Tgg/Cgg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87636173	87636173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	42	381	0	ENST00000277120.3:c.2338G>A	p.Glu780Lys	p.E780K	ENST00000277120		780	Gag/Aag																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249860	110249860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	79	829	0	ENST00000374672.4:c.815G>A	p.Arg272His	p.R272H	ENST00000374672	NM_004235.4	272	cGc/cAc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139820238	139820238	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	102	690	0	ENST00000247668.2:c.1391A>G	p.Asn464Ser	p.N464S	ENST00000247668	NM_021138.3	464	aAc/aGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820638	44820638	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	34	328	0	ENST00000377967.4:c.334+1G>A		p.X112_splice	ENST00000377967	NM_021140.2	112																																																																															
ARAF	369	MSKCC	GRCh37	X	47430347	47430347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	82	756	0	ENST00000377045.4:c.1622C>T	p.Ala541Val	p.A541V	ENST00000377045	NM_001654.4	541	gCc/gTc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652249	48652249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	74	698	0	ENST00000376670.3:c.920G>A	p.Arg307His	p.R307H	ENST00000376670	NM_002049.3	307	cGc/cAc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222205	53222205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	115	682	0	ENST00000375401.3:c.4627C>A	p.Leu1543Met	p.L1543M	ENST00000375401	NM_004187.3	1543	Ctg/Atg																																																																														
MED12	9968	MSKCC	GRCh37	X	70348270	70348270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	121	566	1	ENST00000374080.3:c.3334G>A	p.Asp1112Asn	p.D1112N	ENST00000374080		1112	Gat/Aat																																																																														
MED12	9968	MSKCC	GRCh37	X	70356169	70356169	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	87	716	0	ENST00000374080.3:c.5064G>A	p.Trp1688Ter	p.W1688*	ENST00000374080		1688	tgG/tgA																																																																														
ATRX	546	MSKCC	GRCh37	X	76937199	76937199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	28	495	1	ENST00000373344.5:c.3549G>T	p.Glu1183Asp	p.E1183D	ENST00000373344	NM_000489.3	1183	gaG/gaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76938607	76938607	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	25	465	0	ENST00000373344.5:c.2141A>C	p.Asn714Thr	p.N714T	ENST00000373344	NM_000489.3	714	aAt/aCt																																																																														
BTK	695	MSKCC	GRCh37	X	100609643	100609643	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	68	452	0	ENST00000308731.7:c.1606A>G	p.Lys536Glu	p.K536E	ENST00000308731	NM_000061.2	536	Aaa/Gaa																																																																														
BTK	695	MSKCC	GRCh37	X	100617159	100617159	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	60	503	0	ENST00000308731.7:c.588+2T>C		p.X196_splice	ENST00000308731	NM_000061.2	196																																																																															
STAG2	10735	MSKCC	GRCh37	X	123185223	123185223	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	29	431	0	ENST00000218089.9:c.1175A>C	p.Lys392Thr	p.K392T	ENST00000218089	NM_001042749.1	392	aAa/aCa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123190010	123190010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	39	509	0	ENST00000218089.9:c.1229G>T	p.Cys410Phe	p.C410F	ENST00000218089	NM_001042749.1	410	tGt/tTt																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504095	123504095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	35	422	0	ENST00000371139.4:c.271G>A	p.Asp91Asn	p.D91N	ENST00000371139	NM_001114937.2	91	Gat/Aat																																																																														
FAM58A	0	MSKCC	GRCh37	X	152857987	152857987	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146203325		P-0049760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	41	317	0	ENST00000406277.2:c.628G>A	p.Glu210Lys	p.E210K	ENST00000406277	NM_152274.4	210	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256363	16256363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	216	517	1	ENST00000375759.3:c.3628G>A	p.Glu1210Lys	p.E1210K	ENST00000375759	NM_015001.2	1210	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088659	27088659	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	219	666	2	ENST00000324856.7:c.2272delC	p.Gln758ArgfsTer75	p.Q758Rfs*75	ENST00000324856	NM_006015.4	756	aaC/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	208	633	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	143	369	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276357	115276357	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	114	418	0	ENST00000438362.2:c.971del	p.Asn324ThrfsTer15	p.N324Tfs*15	ENST00000438362	NM_001242891.1	324	aAc/ac																																																																														
NUF2	83540	MSKCC	GRCh37	1	163313582	163313582	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	61	239	0	ENST00000271452.3:c.729A>C	p.Lys243Asn	p.K243N	ENST00000271452	NM_145697.2	243	aaA/aaC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	102	303	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720721	89720721	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	21	155	0	ENST00000371953.3:c.875del	p.Asn292MetfsTer15	p.N292Mfs*15	ENST00000371953	NM_000314.4	291	gAa/ga																																																																														
SUFU	51684	MSKCC	GRCh37	10	104375134	104375134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	228	610	1	ENST00000369902.3:c.1132G>A	p.Gly378Arg	p.G378R	ENST00000369902	NM_016169.3	378	Gga/Aga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	342	459	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138851	64138851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	335	867	1	ENST00000334205.4:c.2218G>A	p.Ala740Thr	p.A740T	ENST00000334205	NM_003942.2	740	Gcc/Acc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047227	77047227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	259	577	0	ENST00000356341.3:c.1317G>T	p.Lys439Asn	p.K439N	ENST00000356341	NM_002576.4	439	aaG/aaT																																																																														
ATM	472	MSKCC	GRCh37	11	108139307	108139307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	153	495	0	ENST00000278616.4:c.2809G>A	p.Glu937Lys	p.E937K	ENST00000278616	NM_000051.3	937	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108170530	108170530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	142	450	0	ENST00000278616.4:c.5095G>A	p.Ala1699Thr	p.A1699T	ENST00000278616	NM_000051.3	1699	Gcc/Acc																																																																														
SDHD	6392	MSKCC	GRCh37	11	111957651	111957651	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	229	577	0	ENST00000375549.3:c.20T>C	p.Leu7Pro	p.L7P	ENST00000375549	NM_003002.3	7	cTg/cCg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118353184	118353184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	133	327	0	ENST00000534358.1:c.4060C>A	p.Pro1354Thr	p.P1354T	ENST00000534358	NM_005933.3	1354	Cct/Act																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	121	358	3	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	149	437	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	109	575	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863319	57863319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	256	804	0	ENST00000228682.2:c.1418del	p.Gly473AlafsTer40	p.G473Afs*40	ENST00000228682	NM_005269.2	472	Ggg/gg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557771	21557771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	240	662	1	ENST00000382592.4:c.2074G>A	p.Ala692Thr	p.A692T	ENST00000382592	NM_014572.2	692	Gcc/Acc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953633	32953633	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	120	351	2	ENST00000380152.3:c.8940del	p.Glu2981LysfsTer7	p.E2981Kfs*7	ENST00000380152		2978	tcA/tc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610014	81610014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	176	445	0	ENST00000298171.2:c.1612G>A	p.Ala538Thr	p.A538T	ENST00000298171	NM_000369.2	538	Gca/Aca																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	149	379	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
B2M	567	MSKCC	GRCh37	15	45007834	45007834	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	176	400	0	ENST00000558401.1:c.285delA	p.Asp96MetfsTer7	p.D96Mfs*7	ENST00000558401	NM_004048.2	94	gAa/ga																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66679726	66679726	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	245	491	0	ENST00000307102.5:c.45del	p.Asp16ThrfsTer25	p.D16Tfs*25	ENST00000307102	NM_002755.3	14	gCc/gc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2111956	2111956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	245	697	0	ENST00000219476.3:c.1204G>A	p.Gly402Arg	p.G402R	ENST00000219476	NM_000548.3	402	Ggg/Agg																																																																														
CBFB	865	MSKCC	GRCh37	16	67063359	67063359	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	187	394	1	ENST00000412916.2:c.54del	p.Phe18LeufsTer4	p.F18Lfs*4	ENST00000412916		17	Ttt/tt																																																																														
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	234	511	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032504	12032504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	28	343	0	ENST00000353533.5:c.940T>C	p.Phe314Leu	p.F314L	ENST00000353533	NM_003010.3	314	Ttt/Ctt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	208	480	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66521914	66521914	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	51	302	0	ENST00000358598.2:c.569G>A	p.Trp190Ter	p.W190*	ENST00000358598	NM_212471.2	190	tGg/tAg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	243	584	1	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252720	10252720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	265	708	3	ENST00000340748.4:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000340748		1082	cGc/cAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284997	15284997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	297	889	2	ENST00000263388.2:c.4618C>T	p.Arg1540Cys	p.R1540C	ENST00000263388	NM_000435.2	1540	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302441	15302441	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	343	877	0	ENST00000263388.2:c.830A>C	p.Glu277Ala	p.E277A	ENST00000263388	NM_000435.2	277	gAg/gCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302909	15302909	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	343	1003	0	ENST00000263388.2:c.541T>G	p.Phe181Val	p.F181V	ENST00000263388	NM_000435.2	181	Ttc/Gtc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223175	36223175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	358	922	3	ENST00000222270.7:c.5730del	p.Arg1911AspfsTer23	p.R1911Dfs*23	ENST00000222270	NM_014727.1	1909	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224340	36224340	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	127	778	1	ENST00000222270.7:c.6895del	p.Arg2299GlyfsTer26	p.R2299Gfs*26	ENST00000222270	NM_014727.1	2297	gCc/gc																																																																														
AXL	558	MSKCC	GRCh37	19	41765621	41765621	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	274	654	0	ENST00000301178.4:c.2501del	p.Pro834LeufsTer122	p.P834Lfs*122	ENST00000301178	NM_021913.4	833	Ccc/cc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47657020	47657020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	321	350	1	ENST00000233146.2:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000233146	NM_000251.2	406	Cga/Tga																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096268	178096268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	213	533	2	ENST00000397062.3:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000397062	NM_006164.4	355	Gca/Aca																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266476	198266477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	102	312	0	ENST00000335508.6:c.2359dup	p.Ile787AsnfsTer21	p.I787Nfs*21	ENST00000335508	NM_012433.2	787	att/aAtt																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	143	392	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	276	854	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021182	31021182	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201899433		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	265	591	0	ENST00000375687.4:c.1181G>A	p.Arg394His	p.R394H	ENST00000375687	NM_015338.5	394	cGt/cAt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	68	363	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750720	39750720	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	20	277	1	ENST00000361337.2:c.2120A>T	p.Asp707Val	p.D707V	ENST00000361337	NM_003286.2	707	gAc/gTc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62292821	62292822	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	86	452	0	ENST00000508582.2:c.287_289dup	p.Ala96dup	p.A96dup	ENST00000508582		96	-/GCT																																																																														
EP300	2033	MSKCC	GRCh37	22	41574522	41574522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	253	695	0	ENST00000263253.7:c.6810del	p.Ser2271ProfsTer8	p.S2271Pfs*8	ENST00000263253	NM_001429.3	2269	atG/at																																																																														
MITF	4286	MSKCC	GRCh37	3	69928347	69928347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	186	504	2	ENST00000352241.4:c.167G>A	p.Arg56His	p.R56H	ENST00000352241	NM_198159.2	56	cGc/cAc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430202	181430202	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	142	416	0	ENST00000325404.1:c.59del	p.Gly20AlafsTer26	p.G20Afs*26	ENST00000325404	NM_003106.3	18	tcG/tc																																																																														
TP63	8626	MSKCC	GRCh37	3	189526227	189526227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	269	731	0	ENST00000264731.3:c.491C>A	p.Ala164Asp	p.A164D	ENST00000264731	NM_003722.4	164	gCc/gAc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156139	106156139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	124	393	0	ENST00000380013.4:c.1040C>T	p.Ala347Val	p.A347V	ENST00000380013	NM_001127208.2	347	gCg/gTg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	93	304	2	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	367	516	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	120	368	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175166	112175166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371113837		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	77	236	0	ENST00000257430.4:c.3875C>T	p.Thr1292Met	p.T1292M	ENST00000257430	NM_000038.5	1292	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112175621	112175622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	111	331	0	ENST00000257430.4:c.4333dup	p.Thr1445AsnfsTer10	p.T1445Nfs*10	ENST00000257430	NM_000038.5	1444	caa/cAaa																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056237	26056245	+	inframe_deletion	In_Frame_Del	DEL	CTTCTTGGG	CTTCTTGGG	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	147	523	0	ENST00000343677.2:c.412_420delCCCAAGAAG	p.Pro138_Lys140del	p.P138_K140del	ENST00000343677	NM_005319.3	138	CCCAAGAAG/-																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32183057	32183057	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	288	753	0	ENST00000375023.3:c.1967del	p.Pro656LeufsTer37	p.P656Lfs*37	ENST00000375023	NM_004557.3	656	cCt/ct																																																																														
FYN	2534	MSKCC	GRCh37	6	112015704	112015704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	240	547	1	ENST00000368678.4:c.1138C>T	p.Arg380Cys	p.R380C	ENST00000368678		380	Cgc/Tgc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099333	157099356	+	inframe_deletion	In_Frame_Del	DEL	CCACCACCACCACCACCATGCCCA	CCACCACCACCACCACCATGCCCA	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	74	453	0	ENST00000346085.5:c.275_298del	p.His92_His99del	p.H92_H99del	ENST00000346085	NM_020732.3	90	gcCCACCACCACCACCACCATGCCCAc/gcc																																																																														
PARK2	0	MSKCC	GRCh37	6	161781225	161781225	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1801334		P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	171	579	0	ENST00000366898.1:c.1180G>A	p.Asp394Asn	p.D394N	ENST00000366898	NM_004562.2	394	Gat/Aat																																																																														
ABL1	25	MSKCC	GRCh37	9	133760307	133760307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	210	703	0	ENST00000318560.5:c.2630G>T	p.Arg877Met	p.R877M	ENST00000318560	NM_005157.4	877	aGg/aTg																																																																														
ARAF	369	MSKCC	GRCh37	X	47430386	47430386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	303	426	0	ENST00000377045.4:c.1661G>A	p.Arg554Gln	p.R554Q	ENST00000377045	NM_001654.4	554	cGg/cAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	199	355	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982123	93982123	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	27	432	1	ENST00000369303.4:c.1342G>T	p.Gly448Ter	p.G448*	ENST00000369303	NM_004440.3	448	Gga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	110	400	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911311	29911311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	98	441	1	ENST00000376809.5:c.610C>T	p.Gln204Ter	p.Q204*	ENST00000376809	NM_002116.7	204	Cag/Tag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438169	56438169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	303	727	0	ENST00000407977.2:c.824G>T	p.Cys275Phe	p.C275F	ENST00000407977		275	tGt/tTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911752	32911752	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	117	468	0	ENST00000380152.3:c.3263del	p.Pro1088LeufsTer16	p.P1088Lfs*16	ENST00000380152		1087	aCc/ac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575103	48575103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	108	327	0	ENST00000342988.3:c.297G>C	p.Trp99Cys	p.W99C	ENST00000342988	NM_005359.5	99	tgG/tgC																																																																														
APC	324	MSKCC	GRCh37	5	112178625	112178646	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAAGCTCCAAGCCCAACCTT	AAGAAGCTCCAAGCCCAACCTT	-			P-0049763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	104	335	0	ENST00000257430.4:c.7340_7361del	p.Ala2447GlufsTer31	p.A2447Efs*31	ENST00000257430	NM_000038.5	2445	aAAGAAGCTCCAAGCCCAACCTTa/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	27	349	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427730	49427732	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0049766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	67	673	0	ENST00000301067.7:c.10756_10758del	p.Lys3586del	p.K3586del	ENST00000301067	NM_003482.3	3586	AAG/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	435	424	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	134	361	2	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	207	292	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	519	421	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	558	789	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2104322	2104322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	365	599	0	ENST00000219476.3:c.362C>T	p.Ala121Val	p.A121V	ENST00000219476	NM_000548.3	121	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	1252	705	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86679547	86679547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	127	386	0	ENST00000274376.6:c.2708G>T	p.Arg903Leu	p.R903L	ENST00000274376	NM_002890.2	903	cGa/cTa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193202153	193202153	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	167	297	0	ENST00000367435.3:c.1185A>C	p.Gln395His	p.Q395H	ENST00000367435	NM_024529.4	395	caA/caC																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88659858	88659858	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	151	338	0	ENST00000372037.3:c.505A>C	p.Ile169Leu	p.I169L	ENST00000372037	NM_004329.2	169	Atc/Ctc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94219201	94219201	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	60	372	0	ENST00000323929.3:c.203C>G	p.Ser68Ter	p.S68*	ENST00000323929	NM_005591.3	68	tCa/tGa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94906451	94906451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	190	447	0	ENST00000536441.1:c.1447G>A	p.Ala483Thr	p.A483T	ENST00000536441	NM_144665.3	483	Gct/Act																																																																														
DIS3	22894	MSKCC	GRCh37	13	73355750	73355750	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	100	665	0	ENST00000377767.4:c.221T>C	p.Leu74Pro	p.L74P	ENST00000377767	NM_014953.3	74	cTg/cCg																																																																														
BARD1	580	MSKCC	GRCh37	2	215645585	215645585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	41	520	0	ENST00000260947.4:c.1013C>T	p.Thr338Ile	p.T338I	ENST00000260947	NM_000465.2	338	aCc/aTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566438	41566438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	214	348	0	ENST00000263253.7:c.4315C>G	p.Pro1439Ala	p.P1439A	ENST00000263253	NM_001429.3	1439	Cca/Gca																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72842089	72842089	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	207	247	0	ENST00000325599.8:c.1159T>A	p.Cys387Ser	p.C387S	ENST00000325599	NM_018130.2	387	Tgt/Agt																																																																														
FYN	2534	MSKCC	GRCh37	6	112024096	112024096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	154	393	0	ENST00000368678.4:c.689A>G	p.His230Arg	p.H230R	ENST00000368678		230	cAt/cGt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041405	47041405	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	617	337	0	ENST00000329236.7:c.1519del	p.Gln507ArgfsTer119	p.Q507Rfs*119	ENST00000329236	NM_001204466.1	505	gaC/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	98	482	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	162	669	8	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0049768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	57	367	7	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	147	362	10	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	86	408	1	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71101750	71101751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	47	232	3	ENST00000318789.4:c.447dup	p.Gln150ThrfsTer20	p.Q150Tfs*20	ENST00000318789	NM_032682.5	149	-/A																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119966	70120018	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	-			P-0049768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	55	539	0	ENST00000245479.2:c.970_1022del	p.Thr324AlafsTer236	p.T324Afs*236	ENST00000245479	NM_000346.3	323	aGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG/a																																																																														
RB1	5925	MSKCC	GRCh37	13	49027160	49027161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAGG			P-0049768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	145	391	9	ENST00000267163.4:c.1729_1733dup	p.Asp578GlufsTer35	p.D578Efs*35	ENST00000267163	NM_000321.2	576	tca/tcAAAGGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	46	312	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0049773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	142	403	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	66	589	1	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790165	40790165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	88	522	0	ENST00000373198.4:c.2566G>A	p.Glu856Lys	p.E856K	ENST00000373198	NM_133170.3	856	Gag/Aag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925351	114925351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	89	584	0	ENST00000543371.1:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000543371	NM_001198531.1	477	Ggc/Agc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715665	18715665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	37	237	0	ENST00000266497.5:c.3496C>T	p.Pro1166Ser	p.P1166S	ENST00000266497		1166	Cct/Tct																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895650	28895650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	64	446	0	ENST00000282397.4:c.3124G>A	p.Gly1042Ser	p.G1042S	ENST00000282397	NM_002019.4	1042	Ggc/Agc																																																																														
CIC	23152	MSKCC	GRCh37	19	42798334	42798334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	113	702	0	ENST00000575354.2:c.4205C>T	p.Ser1402Leu	p.S1402L	ENST00000575354	NM_015125.3	1402	tCa/tTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426668	212426668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	70	479	0	ENST00000342788.4:c.2447G>A	p.Gly816Glu	p.G816E	ENST00000342788	NM_005235.2	816	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530049	212530049	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	35	219	0	ENST00000342788.4:c.1870G>A	p.Gly624Arg	p.G624R	ENST00000342788	NM_005235.2	624	Ggg/Agg																																																																														
TP63	8626	MSKCC	GRCh37	3	189612094	189612094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	64	562	0	ENST00000264731.3:c.1846C>T	p.Leu616Phe	p.L616F	ENST00000264731	NM_003722.4	616	Ctc/Ttc																																																																														
KDR	3791	MSKCC	GRCh37	4	55984906	55984906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	76	417	0	ENST00000263923.4:c.223G>A	p.Glu75Lys	p.E75K	ENST00000263923	NM_002253.2	75	Gag/Aag																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128305426	128305427	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0049773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	78	442	2	ENST00000265960.3:c.869_870delinsTT	p.Ser290Phe	p.S290F	ENST00000265960	NM_001006617.1	290	tCC/tTT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	21	452	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0049774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	13	431	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	57	410	0	ENST00000371953.3:c.389G>C	p.Arg130Pro	p.R130P	ENST00000371953	NM_000314.4	130	cGa/cCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0049774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	8	285	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63545687	63545687	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	55	546	0	ENST00000307078.5:c.907T>C	p.Ser303Pro	p.S303P	ENST00000307078	NM_004655.3	303	Tcc/Ccc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589560	67589598	+	inframe_deletion	In_Frame_Del	DEL	TATTGAAGCTGTAGGGAAAAAATTACATGAATATAACAC	TATTGAAGCTGTAGGGAAAAAATTACATGAATATAACAC	-			P-0049774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	17	212	0	ENST00000274335.5:c.1324_1362del	p.Ile442_Thr454del	p.I442_T454del	ENST00000274335		441	aaTATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACt/aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55220295	55220295	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	99	812	0	ENST00000275493.2:c.685A>C	p.Ser229Arg	p.S229R	ENST00000275493	NM_005228.3	229	Agt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	87	392	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	199	598	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	126	300	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	249	676	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	237	699	3	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	212	642	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210755	5210755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	256	840	0	ENST00000357368.4:c.5296C>T	p.Arg1766Cys	p.R1766C	ENST00000357368	NM_002850.3	1766	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	225	692	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	106	481	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165213	47165213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	73	337	0	ENST00000409792.3:c.913delA	p.Thr305GlnfsTer35	p.T305Qfs*35	ENST00000409792	NM_014159.6	305	Aca/ca																																																																														
PAK7	0	MSKCC	GRCh37	20	9561423	9561423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201131316		P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	152	504	0	ENST00000353224.5:c.359C>T	p.Ala120Val	p.A120V	ENST00000353224	NM_177990.2	120	gCg/gTg																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	84	446	3	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209631	98209631	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56102979		P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	111	741	1	ENST00000331920.6:c.3907C>T	p.Arg1303Cys	p.R1303C	ENST00000331920	NM_000264.3	1303	Cgc/Tgc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622138	1622138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	268	947	0	ENST00000344749.5:c.737C>T	p.Pro246Leu	p.P246L	ENST00000344749	NM_001136139.2	246	cCg/cTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	24	134	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																																																														
INHA	3623	MSKCC	GRCh37	2	220439700	220439701	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	192	929	2	ENST00000243786.2:c.562_563dupCT	p.Leu189CysfsTer2	p.L189Cfs*2	ENST00000243786	NM_002191.3	185	gct/gCTct																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526513	66526513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	159	451	1	ENST00000358598.2:c.1069C>T	p.Arg357Cys	p.R357C	ENST00000358598	NM_212471.2	357	Cgt/Tgt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955064	17955064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	258	870	1	ENST00000458235.1:c.163G>A	p.Val55Met	p.V55M	ENST00000458235	NM_000215.3	55	Gtg/Atg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859899	151859899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148585727		P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	106	426	0	ENST00000262189.6:c.10763C>T	p.Ser3588Leu	p.S3588L	ENST00000262189	NM_170606.2	3588	tCg/tTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	235	933	3	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3788633	3788633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	114	382	0	ENST00000262367.5:c.4321C>T	p.Arg1441Trp	p.R1441W	ENST00000262367	NM_004380.2	1441	Cgg/Tgg																																																																														
KDR	3791	MSKCC	GRCh37	4	55976689	55976689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	124	486	2	ENST00000263923.4:c.1136C>T	p.Ala379Val	p.A379V	ENST00000263923	NM_002253.2	379	gCg/gTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984856	9984856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	191	455	0	ENST00000330684.3:c.1109G>A	p.Arg370Gln	p.R370Q	ENST00000330684	NM_001134407.1	370	cGg/cAg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643281	38643281	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	82	468	0	ENST00000299084.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000299084	NM_152594.2	251	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845625	72845625	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200095250		P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	229	708	1	ENST00000268489.5:c.3715C>T	p.Arg1239Trp	p.R1239W	ENST00000268489	NM_006885.3	1239	Cgg/Tgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943374	71943374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141305290		P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	161	530	0	ENST00000298229.2:c.1706C>T	p.Thr569Met	p.T569M	ENST00000298229	NM_001567.3	569	aCg/aTg																																																																														
BCL6	604	MSKCC	GRCh37	3	187447553	187447553	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189037992		P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	213	648	1	ENST00000232014.4:c.640C>T	p.Arg214Trp	p.R214W	ENST00000232014	NM_001130845.1	214	Cgg/Tgg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669526	88669526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	130	429	0	ENST00000360948.2:c.1372C>T	p.Arg458Ter	p.R458*	ENST00000360948	NM_001012338.2	458	Cga/Tga																																																																														
SRC	6714	MSKCC	GRCh37	20	36014578	36014578	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	153	561	0	ENST00000358208.4:c.350+1G>A		p.X117_splice	ENST00000358208		117																																																																															
RET	5979	MSKCC	GRCh37	10	43606839	43606839	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	262	878	0	ENST00000355710.3:c.1448A>G	p.Tyr483Cys	p.Y483C	ENST00000355710	NM_020975.4	483	tAc/tGc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357114	89357114	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	259	903	0	ENST00000301030.4:c.520C>T	p.Arg174Ter	p.R174*	ENST00000301030	NM_001256183.1	174	Cga/Tga																																																																														
EZH1	2145	MSKCC	GRCh37	17	40872414	40872414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	184	548	1	ENST00000428826.2:c.541G>A	p.Asp181Asn	p.D181N	ENST00000428826		181	Gat/Aat																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223421	2223421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	206	690	0	ENST00000398665.3:c.3532G>A	p.Ala1178Thr	p.A1178T	ENST00000398665	NM_032482.2	1178	Gca/Aca																																																																														
INSR	3643	MSKCC	GRCh37	19	7141749	7141749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	210	652	0	ENST00000302850.5:c.2621C>A	p.Pro874Gln	p.P874Q	ENST00000302850	NM_000208.2	874	cCg/cAg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934713	49934713	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	245	673	1	ENST00000296474.3:c.2183G>A	p.Arg728Gln	p.R728Q	ENST00000296474	NM_002447.2	728	cGg/cAg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437821	52437821	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	216	726	1	ENST00000460680.1:c.1340T>A	p.Val447Asp	p.V447D	ENST00000460680	NM_004656.3	447	gTc/gAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722154	176722154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	204	670	0	ENST00000439151.2:c.7785G>T	p.Lys2595Asn	p.K2595N	ENST00000439151	NM_022455.4	2595	aaG/aaT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157510912	157510912	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	98	446	0	ENST00000346085.5:c.3688del	p.Arg1230GlufsTer14	p.R1230Efs*14	ENST00000346085	NM_020732.3	1229	ggA/gg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209260	98209260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	223	798	0	ENST00000331920.6:c.4278G>T	p.Lys1426Asn	p.K1426N	ENST00000331920	NM_000264.3	1426	aaG/aaT																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900261	101900261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	97	374	0	ENST00000374994.4:c.695A>C	p.Lys232Thr	p.K232T	ENST00000374994	NM_004612.2	232	aAg/aCg																																																																														
BBC3	27113	MSKCC	GRCh37	19	47731458	47731460	+	missense_variant	Missense_Mutation	ONP	CCA	CCA	GCG			P-0049775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	34	142	0	ENST00000449228.1:c.332_334delinsCGC	p.Leu111_Ala112delinsProPro	p.L111_A112delinsPP	ENST00000449228	NM_001127240.2	111	cTGGcc/cCGCcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	629	710	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																														
RB1	5925	MSKCC	GRCh37	13	48947603	48947603	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	26	354	0	ENST00000267163.4:c.1190C>A	p.Ser397Ter	p.S397*	ENST00000267163	NM_000321.2	397	tCa/tAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	41	219	0	ENST00000274335.5:c.1392_1403delTAGATTATATGA	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa																																																																														
ALK	238	MSKCC	GRCh37	2	29551215	29551215	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	346	631	0	ENST00000389048.3:c.1414+1G>A		p.X472_splice	ENST00000389048	NM_004304.4	472																																																																															
SUFU	51684	MSKCC	GRCh37	10	104356906	104356906	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	170	555	0	ENST00000369902.3:c.766G>C	p.Asp256His	p.D256H	ENST00000369902	NM_016169.3	256	Gac/Cac																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111884782	111884782	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	156	628	0	ENST00000341259.2:c.871G>C	p.Asp291His	p.D291H	ENST00000341259	NM_005475.2	291	Gac/Cac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288864	15288864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	89	263	0	ENST00000263388.2:c.3875C>G	p.Ser1292Cys	p.S1292C	ENST00000263388	NM_000435.2	1292	tCc/tGc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965334	25965334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	125	679	0	ENST00000435504.4:c.3872C>G	p.Ser1291Cys	p.S1291C	ENST00000435504		1291	tCt/tGt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198272754	198272754	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	46	505	0	ENST00000335508.6:c.1207G>C	p.Glu403Gln	p.E403Q	ENST00000335508	NM_012433.2	403	Gaa/Caa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175822	24175822	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	177	654	0	ENST00000263121.7:c.1050C>G	p.Cys350Trp	p.C350W	ENST00000263121	NM_003073.3	350	tgC/tgG																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182274	38182274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1432	91	593	0	ENST00000396334.3:c.710C>T	p.Ser237Phe	p.S237F	ENST00000396334	NM_002468.4	237	tCt/tTt																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504304	186504304	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	25	198	0	ENST00000323963.5:c.641C>G	p.Ser214Cys	p.S214C	ENST00000323963		214	tCt/tGt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681073	117681073	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	76	472	0	ENST00000368508.3:c.3547G>C	p.Val1183Leu	p.V1183L	ENST00000368508	NM_002944.2	1183	Gtt/Ctt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139411736	139411736	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	474	776	0	ENST00000277541.6:c.1543G>C	p.Glu515Gln	p.E515Q	ENST00000277541	NM_017617.3	515	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	304	381	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	495	978	3	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	517	1042	1	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467823	50467823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	358	761	1	ENST00000331340.3:c.1058C>A	p.Pro353Gln	p.P353Q	ENST00000331340	NM_006060.4	353	cCg/cAg																																																																														
RB1	5925	MSKCC	GRCh37	13	48916825	48916825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	98	393	0	ENST00000267163.4:c.355G>T	p.Glu119Ter	p.E119*	ENST00000267163	NM_000321.2	119	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974759	21974759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	188	436	0	ENST00000304494.5:c.68del	p.Gly23ValfsTer3	p.G23Vfs*3	ENST00000304494	NM_000077.4	23	gGt/gt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974759	21974759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	188	436	0	ENST00000304494.5:c.68del	p.Gly23ValfsTer3	p.G23Vfs*3	ENST00000304494	NM_000077.4	23	gGt/gt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858568	9858568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	204	604	0	ENST00000330684.3:c.2833G>T	p.Asp945Tyr	p.D945Y	ENST00000330684	NM_001134407.1	945	Gac/Tac																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509843	106509843	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	272	634	0	ENST00000359195.3:c.1837A>G	p.Arg613Gly	p.R613G	ENST00000359195	NM_002649.2	613	Aga/Gga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395032	139395032	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	429	940	3	ENST00000277541.6:c.5906T>C	p.Val1969Ala	p.V1969A	ENST00000277541	NM_017617.3	1969	gTg/gCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	71	396	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	98	706	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628737	21628737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	59	342	0	ENST00000421138.2:c.971A>G	p.Gln324Arg	p.Q324R	ENST00000421138		324	cAg/cGg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900290	101900290	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	55	402	0	ENST00000374994.4:c.724T>C	p.Trp242Arg	p.W242R	ENST00000374994	NM_004612.2	242	Tgg/Cgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	36	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495360	149495360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114435947		P-0049781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	77	818	2	ENST00000261799.4:c.3287C>T	p.Ala1096Val	p.A1096V	ENST00000261799	NM_002609.3	1096	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579433	7579433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1064793279		P-0049781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	77	836	0	ENST00000269305.4:c.254del	p.Pro85LeufsTer38	p.P85Lfs*38	ENST00000269305	NM_001126112.2	85	cCt/ct																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981170	201981171	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	88	842	0	ENST00000359651.3:c.249_250insG	p.Lys84GlufsTer8	p.K84Efs*8	ENST00000359651		83	-/G																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0049782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	191	740	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0049782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	176	365	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0049782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	560	938	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	34	608	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	34	608	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	34	608	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
NF2	4771	MSKCC	GRCh37	22	30051618	30051618	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	55	559	1	ENST00000338641.4:c.552G>A	p.Trp184Ter	p.W184*	ENST00000338641	NM_000268.3	184	tgG/tgA																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310909	123310929	+	inframe_deletion	In_Frame_Del	DEL	GTTGGCCGCAGGCACAGCATG	GTTGGCCGCAGGCACAGCATG	-			P-0049794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	73	663	1	ENST00000358487.5:c.499_519delCATGCTGTGCCTGCGGCCAAC	p.His167_Asn173del	p.H167_N173del	ENST00000358487	NM_000141.4	167	CATGCTGTGCCTGCGGCCAAC/-																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022399	12022399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	12	926	0	ENST00000396373.4:c.505G>T	p.Val169Leu	p.V169L	ENST00000396373	NM_001987.4	169	Gtg/Ttg																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39325177	39325177	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	45	634	0	ENST00000373001.3:c.142del	p.Ala48GlnfsTer63	p.A48Qfs*63	ENST00000373001	NM_022157.3	48	Gca/ca																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641778	23641778	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144617793		P-0049794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	31	341	0	ENST00000261584.4:c.1697G>A	p.Arg566His	p.R566H	ENST00000261584	NM_024675.3	566	cGt/cAt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50827520	50827520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	32	643	0	ENST00000398568.2:c.2405A>T	p.Asp802Val	p.D802V	ENST00000398568	NM_001042412.1	802	gAt/gTt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533153	63533153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	38	772	5	ENST00000307078.5:c.1741C>T	p.Arg581Cys	p.R581C	ENST00000307078	NM_004655.3	581	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299916	15299916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	67	976	2	ENST00000263388.2:c.1262G>A	p.Arg421His	p.R421H	ENST00000263388	NM_000435.2	421	cGt/cAt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260094	16260118	+	frameshift_variant	Frame_Shift_Del	DEL	CATTGAAAGTGACCCGGTGACCCCA	CATTGAAAGTGACCCGGTGACCCCA	-			P-0049795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	365	614	0	ENST00000375759.3:c.7360_7384del	p.Ile2454ProfsTer14	p.I2454Pfs*14	ENST00000375759	NM_015001.2	2453	atCATTGAAAGTGACCCGGTGACCCCA/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	108	503	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579855	7579855	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1131691018		P-0049796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	120	638	0	ENST00000269305.4:c.58del	p.Ser20GlnfsTer24	p.S20Qfs*24	ENST00000269305	NM_001126112.2	20	Tca/ca																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969405	44969405	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	92	263	0	ENST00000377967.4:c.4087C>T	p.Arg1363Ter	p.R1363*	ENST00000377967	NM_021140.2	1363	Cga/Tga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63553932	63553951	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGTCAACAGTTTCCGTGG	ACTGTCAACAGTTTCCGTGG	-			P-0049796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	54	463	0	ENST00000307078.5:c.788_807del	p.Ser263TrpfsTer12	p.S263Wfs*12	ENST00000307078	NM_004655.3	263	tCCACGGAAACTGTTGACAGT/t																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0049799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	290	631	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
RET	5979	MSKCC	GRCh37	10	43600525	43600525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	157	619	0	ENST00000355710.3:c.751G>C	p.Glu251Gln	p.E251Q	ENST00000355710	NM_020975.4	251	Gag/Cag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944554	40944554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	190	535	0	ENST00000373198.4:c.1948G>A	p.Val650Met	p.V650M	ENST00000373198	NM_133170.3	650	Gtg/Atg																																																																														
ATM	472	MSKCC	GRCh37	11	108124762	108124762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	80	343	0	ENST00000278616.4:c.2120C>G	p.Ser707Cys	p.S707C	ENST00000278616	NM_000051.3	707	tCt/tGt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120402	94120402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	116	380	0	ENST00000369303.4:c.649G>A	p.Asp217Asn	p.D217N	ENST00000369303	NM_004440.3	217	Gat/Aat																																																																														
MSH2	4436	MSKCC	GRCh37	2	47657053	47657053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	41	322	0	ENST00000233146.2:c.1249G>A	p.Val417Ile	p.V417I	ENST00000233146	NM_000251.2	417	Gtt/Att																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928070	178928070	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	157	602	0	ENST00000263967.3:c.1348C>G	p.His450Asp	p.H450D	ENST00000263967	NM_006218.2	450	Cat/Gat																																																																														
STK19	8859	MSKCC	GRCh37	6	31940443	31940443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	251	784	1	ENST00000375331.2:c.476G>A	p.Arg159Gln	p.R159Q	ENST00000375331	NM_004197.1	159	cGa/cAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942816	44942817	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAACTATACATG			P-0049799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	338	332	0	ENST00000377967.4:c.3397_3408dup	p.Gln1133_Met1136dup	p.Q1133_M1136dup	ENST00000377967	NM_021140.2	1133	-/CAACTATACATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	352	707	3	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																														
APC	324	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	160	490	2	ENST00000257430.4:c.1312+1G>A		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432040	121432040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1301	166	872	0	ENST00000257555.6:c.787C>T	p.Arg263Cys	p.R263C	ENST00000257555		263	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916860	178916862	+	missense_variant	Missense_Mutation	ONP	TTT	TTT	AAG			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	64	701	1	ENST00000263967.3:c.247_249delinsAAG	p.Phe83Lys	p.F83K	ENST00000263967	NM_006218.2	83	TTT/AAG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735548	40735548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	464	676	3	ENST00000373198.4:c.3325C>T	p.Arg1109Trp	p.R1109W	ENST00000373198	NM_133170.3	1109	Cgg/Tgg																																																																														
TET2	54790	MSKCC	GRCh37	4	106197599	106197599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	198	516	1	ENST00000380013.4:c.5932G>A	p.Val1978Met	p.V1978M	ENST00000380013	NM_001127208.2	1978	Gtg/Atg																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2491276	2491276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	358	818	3	ENST00000355716.4:c.319G>A	p.Ala107Thr	p.A107T	ENST00000355716	NM_003820.2	107	Gcg/Acg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660154	227660154	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	73	913	1	ENST00000305123.5:c.3301T>A	p.Ser1101Thr	p.S1101T	ENST00000305123	NM_005544.2	1101	Tcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	274	665	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0049804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	40	344	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119924	70119924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	59	511	0	ENST00000245479.2:c.926C>T	p.Thr309Met	p.T309M	ENST00000245479	NM_000346.3	309	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433541	49433542	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGA			P-0049804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	272	871	0	ENST00000301067.7:c.8008_8011dup	p.Gly2671ValfsTer4	p.G2671Vfs*4	ENST00000301067	NM_003482.3	2671	ggc/gTCCGgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438221	49438221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	224	693	1	ENST00000301067.7:c.5048A>T	p.Glu1683Val	p.E1683V	ENST00000301067	NM_003482.3	1683	gAa/gTa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	150	544	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	144	486	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	197	751	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	235	760	2	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156713	20156713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	195	536	0	ENST00000379607.5:c.44G>A	p.Gly15Asp	p.G15D	ENST00000379607	NM_001412.3	15	gGt/gAt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	161	469	4	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1192	171	635	3	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509045	106509045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	228	756	2	ENST00000359195.3:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000359195	NM_002649.2	347	Gag/Aag																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775719	9775719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	222	846	2	ENST00000377346.4:c.262C>T	p.Arg88Cys	p.R88C	ENST00000377346	NM_005026.3	88	Cgt/Tgt																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	148	573	1	ENST00000237289.4:c.1368delG	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65309887	65309887	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	63	489	1	ENST00000342505.4:c.2263C>T	p.Arg755Ter	p.R755*	ENST00000342505	NM_002227.2	755	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260456	16260456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201347979		P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	150	625	1	ENST00000375759.3:c.7721C>T	p.Pro2574Leu	p.P2574L	ENST00000375759	NM_015001.2	2574	cCg/cTg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	190	849	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
NUP93	9688	MSKCC	GRCh37	16	56878487	56878487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	186	537	1	ENST00000308159.5:c.2426C>T	p.Ala809Val	p.A809V	ENST00000308159	NM_014669.4	809	gCg/gTg																																																																														
EED	8726	MSKCC	GRCh37	11	85966300	85966300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	95	418	0	ENST00000263360.6:c.397C>T	p.Arg133Trp	p.R133W	ENST00000263360	NM_003797.3	133	Cgg/Tgg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021277	31021277	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	181	676	0	ENST00000375687.4:c.1281del	p.Lys427AsnfsTer35	p.K427Nfs*35	ENST00000375687	NM_015338.5	426	Aaa/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444378	49444378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	247	758	1	ENST00000301067.7:c.2993del	p.Pro998LeufsTer2	p.P998Lfs*2	ENST00000301067	NM_003482.3	998	cCt/ct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434235	49434235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	311	953	0	ENST00000301067.7:c.7318G>A	p.Val2440Ile	p.V2440I	ENST00000301067	NM_003482.3	2440	Gtt/Att																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152027747	152027747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	279	757	5	ENST00000262189.6:c.328C>T	p.Arg110Ter	p.R110*	ENST00000262189	NM_170606.2	110	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692792	89692792	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	115	423	0	ENST00000371953.3:c.276C>G	p.Asp92Glu	p.D92E	ENST00000371953	NM_000314.4	92	gaC/gaG																																																																														
ERF	2077	MSKCC	GRCh37	19	42754535	42754535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	191	796	0	ENST00000222329.4:c.205G>A	p.Val69Ile	p.V69I	ENST00000222329	NM_006494.2	69	Gtt/Att																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720741	89720742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	11	197	0	ENST00000371953.3:c.894dup	p.Glu299ArgfsTer4	p.E299Rfs*4	ENST00000371953	NM_000314.4	298	caa/cAaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678473	88678474	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	178	669	0	ENST00000360948.2:c.1062dup	p.Glu355ArgfsTer52	p.E355Rfs*52	ENST00000360948	NM_001012338.2	354	-/A																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923290	9923290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	166	578	0	ENST00000330684.3:c.1997G>T	p.Ser666Ile	p.S666I	ENST00000330684	NM_001134407.1	666	aGt/aTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984451	72984451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	305	666	0	ENST00000268489.5:c.3133T>C	p.Cys1045Arg	p.C1045R	ENST00000268489	NM_006885.3	1045	Tgt/Cgt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40477051	40477051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	204	553	0	ENST00000264657.5:c.1394C>T	p.Ser465Phe	p.S465F	ENST00000264657	NM_139276.2	465	tCc/tTc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56411713	56411713	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	126	472	0	ENST00000348428.3:c.1897A>G	p.Thr633Ala	p.T633A	ENST00000348428	NM_006785.3	633	Act/Gct																																																																														
VHL	7428	MSKCC	GRCh37	3	10191624	10191624	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	258	707	0	ENST00000256474.2:c.617T>A	p.Ile206Asn	p.I206N	ENST00000256474	NM_000551.3	206	aTt/aAt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637516	176637516	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	180	671	1	ENST00000439151.2:c.2116A>T	p.Asn706Tyr	p.N706Y	ENST00000439151	NM_022455.4	706	Aac/Tac																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030231	180030232	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	134	724	0	ENST00000261937.6:c.4052dup	p.Ser1352ValfsTer92	p.S1352Vfs*92	ENST00000261937	NM_182925.4	1351	ccg/ccCg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035175	6035175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	111	425	0	ENST00000265849.7:c.893A>G	p.Asp298Gly	p.D298G	ENST00000265849	NM_000535.5	298	gAc/gGc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371617	55371618	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GC			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	224	613	0	ENST00000297316.4:c.308_309dup	p.Lys104AlafsTer7	p.K104Afs*7	ENST00000297316	NM_022454.3	103	ggc/gGCgc																																																																														
SYK	6850	MSKCC	GRCh37	9	93606395	93606395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200175081		P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	219	715	0	ENST00000375746.1:c.215G>A	p.Gly72Asp	p.G72D	ENST00000375746	NM_001174167.1	72	gGc/gAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933205	39933205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	327	828	1	ENST00000378444.4:c.1394T>C	p.Val465Ala	p.V465A	ENST00000378444	NM_001123385.1	465	gTc/gCc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061218	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCCGTTCTCGAACATGTT	GCCGTTCTCGAACATGTT	-			P-0049806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	117	618	0	ENST00000250448.2:c.754_771del	p.Asn252_Gly257del	p.N252_G257del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGC/-																																																																														
APC	324	MSKCC	GRCh37	5	112175696	112175696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	115	405	0	ENST00000257430.4:c.4405C>T	p.Gln1469Ter	p.Q1469*	ENST00000257430	NM_000038.5	1469	Caa/Taa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061243	+	inframe_deletion	In_Frame_Del	DEL	CGTTCTCGAACATGTTGCCGGAGT	CGTTCTCGAACATGTTGCCGGAGT	-			P-0049807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	103	508	0	ENST00000250448.2:c.746_769delACTCCGGCAACATGTTCGAGAACG	p.Asp249_Asn256del	p.D249_N256del	ENST00000250448	NM_004496.3	249	gACTCCGGCAACATGTTCGAGAACGgc/ggc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3656483	3656483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201117707		P-0049807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	159	787	1	ENST00000294008.3:c.752C>T	p.Ala251Val	p.A251V	ENST00000294008	NM_032444.2	251	gCg/gTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882331	89882331	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	106	655	0	ENST00000389301.3:c.143T>A	p.Val48Glu	p.V48E	ENST00000389301	NM_000135.2	48	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	295	585	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	166	290	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	49050864	49050864	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	161	497	0	ENST00000267163.4:c.2548C>T	p.Gln850Ter	p.Q850*	ENST00000267163	NM_000321.2	850	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	48954188	48954188	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	108	296	0	ENST00000267163.4:c.1390-1G>A		p.X464_splice	ENST00000267163	NM_000321.2	464																																																																															
TP53	7157	MSKCC	GRCh37	17	7572986	7572986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	283	527	1	ENST00000269305.4:c.1123C>T	p.Gln375Ter	p.Q375*	ENST00000269305	NM_001126112.2	375	Cag/Tag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860557	45860557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	364	783	0	ENST00000391945.4:c.1450A>G	p.Thr484Ala	p.T484A	ENST00000391945	NM_000400.3	484	Acg/Gcg																																																																														
KIT	3815	MSKCC	GRCh37	4	55592079	55592079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200518498		P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	268	626	0	ENST00000288135.5:c.1403C>T	p.Pro468Leu	p.P468L	ENST00000288135	NM_000222.2	468	cCg/cTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054837	5054837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	186	533	1	ENST00000381652.3:c.889C>T	p.Gln297Ter	p.Q297*	ENST00000381652	NM_004972.3	297	Cag/Tag																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509431	149509431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	308	820	0	ENST00000261799.4:c.1468G>A	p.Glu490Lys	p.E490K	ENST00000261799	NM_002609.3	490	Gag/Aag																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158513	26158513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	292	532	1	ENST00000289316.2:c.116C>T	p.Ser39Leu	p.S39L	ENST00000289316	NM_138720.2	39	tCa/tTa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021673	31021673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	309	643	1	ENST00000375687.4:c.1672G>A	p.Glu558Lys	p.E558K	ENST00000375687	NM_015338.5	558	Gaa/Aaa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88651963	88651963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	167	434	0	ENST00000372037.3:c.310G>A	p.Glu104Lys	p.E104K	ENST00000372037	NM_004329.2	104	Gaa/Aaa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510793	120510793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	266	572	0	ENST00000256646.2:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000256646	NM_024408.3	391	Gac/Aac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114799831	114799832	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	327	648	1	ENST00000543371.1:c.498_499delinsTT	p.Gln167Ter	p.Q167*	ENST00000543371	NM_001198531.1	166	ctCCag/ctTTag																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628726	21628726	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	196	560	0	ENST00000421138.2:c.982G>T	p.Glu328Ter	p.E328*	ENST00000421138		328	Gaa/Taa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231151	46231151	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	163	509	0	ENST00000334344.6:c.1071del	p.His357GlnfsTer7	p.H357Qfs*7	ENST00000334344	NM_152641.2	357	caT/ca																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858433	9858433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	208	589	0	ENST00000330684.3:c.2968G>A	p.Glu990Lys	p.E990K	ENST00000330684	NM_001134407.1	990	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68772201	68772201	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	260	734	0	ENST00000261769.5:c.50T>A	p.Val17Asp	p.V17D	ENST00000261769	NM_004360.3	17	gTc/gAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822501	72822501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	355	768	0	ENST00000268489.5:c.9674C>T	p.Pro3225Leu	p.P3225L	ENST00000268489	NM_006885.3	3225	cCa/cTa																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66511670	66511670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	264	627	0	ENST00000358598.2:c.130G>A	p.Glu44Lys	p.E44K	ENST00000358598	NM_212471.2	44	Gag/Aag																																																																														
CALR	811	MSKCC	GRCh37	19	13054408	13054408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	342	703	1	ENST00000316448.5:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000316448	NM_004343.3	340	Gag/Aag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966194	25966206	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGTGCTATTT	TCTGGTGCTATTT	-			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	286	724	0	ENST00000435504.4:c.3000_3012del	p.Asn1001ArgfsTer40	p.N1001Rfs*40	ENST00000435504		1000	gaAAATAGCACCAGA/ga																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46280009	46280036	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACCAAATTATGGTAAATCTGACAATGA	AACCAAATTATGGTAAATCTGACAATGA	-			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	282	567	1	ENST00000371998.3:c.3937_3946+18del		p.X1313_splice	ENST00000371998		1313																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247326	153247344	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGCCTGTCTCAATATCC	CTGGCCTGTCTCAATATCC	-			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	155	406	0	ENST00000281708.4:c.1458_1476del	p.Trp486CysfsTer6	p.W486Cfs*6	ENST00000281708	NM_033632.3	486	tgGGATATTGAGACAGGCCAG/tg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	158	290	0	ENST00000281708.4:c.1429G>C	p.Gly477Arg	p.G477R	ENST00000281708	NM_033632.3	477	Ggt/Cgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532512	187532541	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTTCCTCTCAGATACATGGTAGGTTACCT	GTTTCCTCTCAGATACATGGTAGGTTACCT	-			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	48	330	0	ENST00000441802.2:c.9852_9853+28del		p.X3284_splice	ENST00000441802	NM_005245.3	3284																																																																															
FAT1	2195	MSKCC	GRCh37	4	187535405	187535405	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	216	581	0	ENST00000441802.2:c.9169G>T	p.Glu3057Ter	p.E3057*	ENST00000441802	NM_005245.3	3057	Gaa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674212	86674212	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	112	395	0	ENST00000274376.6:c.2345-1G>A		p.X782_splice	ENST00000274376	NM_002890.2	782																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672575	30672575	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	257	669	0	ENST00000376406.3:c.4385A>G	p.Asp1462Gly	p.D1462G	ENST00000376406	NM_014641.2	1462	gAc/gGc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129183	152129183	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	244	795	0	ENST00000206249.3:c.136A>C	p.Ser46Arg	p.S46R	ENST00000206249	NM_000125.3	46	Agc/Cgc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69136806	69136806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	220	509	0	ENST00000288368.4:c.4720C>G	p.Gln1574Glu	p.Q1574E	ENST00000288368	NM_024870.2	1574	Cag/Gag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922783	44922789	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGTG	CAGAGTG	-			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	256	555	0	ENST00000377967.4:c.1645_1651del	p.Arg549LeufsTer42	p.R549Lfs*42	ENST00000377967	NM_021140.2	548	acCAGAGTG/ac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788634	3788645	+	protein_altering_variant	In_Frame_Del	DEL	GAAGAAATGAAT	GAAGAAATGAAT	AAG			P-0049808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	542	528	0	ENST00000262367.5:c.4309_4320delinsCTT	p.Ile1437_Phe1440delinsLeu	p.I1437_F1440delinsL	ENST00000262367	NM_004380.2	1437	ATTCATTTCTTC/CTT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257325	16257371	+	frameshift_variant	Frame_Shift_Del	DEL	TTTACACAGCTCAATCTTTGAACAAGATTCCAAGCGATTGCAGCATC	TTTACACAGCTCAATCTTTGAACAAGATTCCAAGCGATTGCAGCATC	-			P-0049809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	155	743	0	ENST00000375759.3:c.4591_4637del	p.Leu1531ArgfsTer8	p.L1531Rfs*8	ENST00000375759	NM_015001.2	1530	ttTTTACACAGCTCAATCTTTGAACAAGATTCCAAGCGATTGCAGCATCta/ttta																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465437	99465437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	139	541	0	ENST00000268035.6:c.2262C>A	p.Ser754Arg	p.S754R	ENST00000268035	NM_000875.3	754	agC/agA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	184	747	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	35	797	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
EP300	2033	MSKCC	GRCh37	22	41553397	41553397	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0049812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	47	572	0	ENST00000263253.7:c.3486C>G	p.Tyr1162Ter	p.Y1162*	ENST00000263253	NM_001429.3	1162	taC/taG																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001065	150001065	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	53	676	0	ENST00000253339.5:c.2539T>G	p.Phe847Val	p.F847V	ENST00000253339		847	Ttt/Gtt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	12	313	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	19	686	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100754	8100754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	16	751	0	ENST00000346208.3:c.728C>T	p.Ser243Phe	p.S243F	ENST00000346208		243	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118350886	118350910	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGGATGAGAAAATGTCAGAATCTA	TAGGATGAGAAAATGTCAGAATCTA	-			P-0049814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	19	451	0	ENST00000534358.1:c.3570-3_3591del		p.X1190_splice	ENST00000534358	NM_005933.3	1190																																																																															
NBN	4683	MSKCC	GRCh37	8	90993748	90993748	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	37	315	0	ENST00000265433.3:c.175C>G	p.Gln59Glu	p.Q59E	ENST00000265433	NM_002485.4	59	Caa/Gaa																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	71	173	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0018669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	932	654	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																														
SMO	6608	MSKCC	GRCh37	7	128845101	128845101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201246258		P-0018669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			839	404	818	1	ENST00000249373.3:c.595C>T	p.Arg199Trp	p.R199W	ENST00000249373	NM_005631.4	199	Cgg/Tgg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176329	24176329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	809	785	1	ENST00000263121.7:c.1120C>T	p.Arg374Trp	p.R374W	ENST00000263121	NM_003073.3	374	Cgg/Tgg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920446	114920446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	380	389	0	ENST00000543371.1:c.1387del	p.Cys463AlafsTer28	p.C463Afs*28	ENST00000543371	NM_001198531.1	463	Tgc/gc																																																																														
ATR	545	MSKCC	GRCh37	3	142217572	142217572	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	189	350	1	ENST00000350721.4:c.5425T>G	p.Leu1809Val	p.L1809V	ENST00000350721	NM_001184.3	1809	Tta/Gta																																																																														
APC	324	MSKCC	GRCh37	5	112116518	112116519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATTGGAAT			P-0018669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	64	208	0	ENST00000257430.4:c.566_573dup	p.Glu192TrpfsTer16	p.E192Wfs*16	ENST00000257430	NM_000038.5	188	caa/caATTGGAATa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500945	8500945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	166	346	0	ENST00000356435.5:c.1937C>T	p.Ser646Phe	p.S646F	ENST00000356435		646	tCc/tTc																																																																														
ATM	472	MSKCC	GRCh37	11	108183192	108183192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	90	181	0	ENST00000278616.4:c.5973A>C	p.Glu1991Asp	p.E1991D	ENST00000278616	NM_000051.3	1991	gaA/gaC																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435380	18435380	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	123	254	0	ENST00000266497.5:c.365A>C	p.Lys122Thr	p.K122T	ENST00000266497		122	aAa/aCa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0044017-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	217	540	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044017-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	383	986	1	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																														
HRAS	3265	MSKCC	GRCh37	11	533586	533586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044017-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1275	210	1072	0	ENST00000311189.7:c.317C>T	p.Ser106Leu	p.S106L	ENST00000311189		106	tCg/tTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984418	72984418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044017-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			880	131	924	0	ENST00000268489.5:c.3166C>T	p.Arg1056Trp	p.R1056W	ENST00000268489	NM_006885.3	1056	Cgg/Tgg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056315	180056315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044017-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	223	1116	0	ENST00000261937.6:c.929G>A	p.Cys310Tyr	p.C310Y	ENST00000261937	NM_182925.4	310	tGc/tAc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026568	6026568	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044017-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1447	227	666	0	ENST00000265849.7:c.1828A>C	p.Lys610Gln	p.K610Q	ENST00000265849	NM_000535.5	610	Aaa/Caa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149238646	149238651	+	missense_variant	Missense_Mutation	ONP	GAAGAG	GAAGAG	TAAAAA			P-0044017-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	88	478	1	ENST00000360632.3:c.1144_1149delinsTTTTTA	p.Leu382_Phe383delinsPheLeu	p.L382_F383delinsFL	ENST00000360632	NM_015472.4	382	CTCTTC/TTTTTA																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115416	115115416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	74	537	0	ENST00000257566.3:c.910C>T	p.Arg304Trp	p.R304W	ENST00000257566	NM_016569.3	304	Cgg/Tgg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40870612	40870612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	64	551	0	ENST00000428826.2:c.791C>T	p.Ser264Leu	p.S264L	ENST00000428826		264	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578460	7578470	+	frameshift_variant	Frame_Shift_Del	DEL	ACGCGGGTGCC	ACGCGGGTGCC	GCG			P-0047352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	186	948	2	ENST00000269305.4:c.460_470delinsCGC	p.Gly154ArgfsTer24	p.G154Rfs*24	ENST00000269305	NM_001126112.2	154	GGCACCCGCGTc/CGCc																																																																														
ATM	472	MSKCC	GRCh37	11	108199881	108199881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047956-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	69	225	2	ENST00000278616.4:c.7223C>T	p.Ser2408Leu	p.S2408L	ENST00000278616	NM_000051.3	2408	tCg/tTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			712	624	356	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			712	624	356	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341344	89341344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			888	241	388	0	ENST00000301030.4:c.7591G>C	p.Glu2531Gln	p.E2531Q	ENST00000301030	NM_001256183.1	2531	Gag/Cag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			712	624	356	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106676	27106676	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			540	130	450	0	ENST00000324856.7:c.6287C>G	p.Ser2096Ter	p.S2096*	ENST00000324856	NM_006015.4	2096	tCa/tGa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831181	72831181	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	91	352	0	ENST00000268489.5:c.5400C>G	p.Phe1800Leu	p.F1800L	ENST00000268489	NM_006885.3	1800	ttC/ttG																																																																														
TP63	8626	MSKCC	GRCh37	3	189582062	189582062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	74	254	0	ENST00000264731.3:c.621G>C	p.Lys207Asn	p.K207N	ENST00000264731	NM_003722.4	207	aaG/aaC																																																																														
CUL3	8452	MSKCC	GRCh37	2	225365093	225365093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	41	312	0	ENST00000264414.4:c.1597G>C	p.Glu533Gln	p.E533Q	ENST00000264414	NM_003590.4	533	Gag/Cag																																																																														
ATM	472	MSKCC	GRCh37	11	108098536	108098536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	32	208	0	ENST00000278616.4:c.106G>A	p.Asp36Asn	p.D36N	ENST00000278616	NM_000051.3	36	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108098572	108098572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			118	33	214	0	ENST00000278616.4:c.142G>C	p.Asp48His	p.D48H	ENST00000278616	NM_000051.3	48	Gat/Cat																																																																														
ATM	472	MSKCC	GRCh37	11	108122649	108122649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			110	30	295	0	ENST00000278616.4:c.1693G>T	p.Glu565Ter	p.E565*	ENST00000278616	NM_000051.3	565	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108186749	108186749	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	48	275	0	ENST00000278616.4:c.6107A>G	p.Tyr2036Cys	p.Y2036C	ENST00000278616	NM_000051.3	2036	tAt/tGt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031965	10031965	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	49	417	0	ENST00000330684.3:c.858C>A	p.Tyr286Ter	p.Y286*	ENST00000330684	NM_001134407.1	286	taC/taA																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37865672	37865672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			777	113	374	0	ENST00000269571.5:c.541C>G	p.Leu181Val	p.L181V	ENST00000269571		181	Ctc/Gtc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215381	41215381	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			163	17	266	0	ENST00000357654.3:c.5162A>C	p.Gln1721Pro	p.Q1721P	ENST00000357654	NM_007294.3	1721	cAg/cCg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50917042	50917042	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1943	436	600	0	ENST00000440232.2:c.2294T>G	p.Val765Gly	p.V765G	ENST00000440232	NM_002691.3	765	gTg/gGg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793347	242793347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1543	340	619	1	ENST00000334409.5:c.730G>A	p.Glu244Lys	p.E244K	ENST00000334409	NM_005018.2	244	Gag/Aag																																																																														
ERG	2078	MSKCC	GRCh37	21	39775433	39775433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	39	324	0	ENST00000288319.7:c.587G>C	p.Arg196Thr	p.R196T	ENST00000288319	NM_182918.3	196	aGa/aCa																																																																														
NF2	4771	MSKCC	GRCh37	22	30074190	30074190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	30	250	0	ENST00000338641.4:c.1452G>A	p.Met484Ile	p.M484I	ENST00000338641	NM_000268.3	484	atG/atA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361199	66361200	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			92	20	206	0	ENST00000273854.3:c.972_973del	p.His325GlnfsTer5	p.H325Qfs*5	ENST00000273854	NM_004439.5	324	ccTCac/ccac																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38975652	38975652	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			137	20	342	0	ENST00000357387.3:c.876C>G	p.Phe292Leu	p.F292L	ENST00000357387	NM_152756.3	292	ttC/ttG																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100172	157100172	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			172	50	61	0	ENST00000346085.5:c.1109C>G	p.Ser370Cys	p.S370C	ENST00000346085	NM_020732.3	370	tCc/tGc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741693	145741693	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2274	351	526	0	ENST00000428558.2:c.810G>C	p.Glu270Asp	p.E270D	ENST00000428558	NM_004260.3	270	gaG/gaC																																																																														
AR	367	MSKCC	GRCh37	X	66942759	66942760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	17	337	0	ENST00000374690.3:c.2546dup	p.Asn849LysfsTer32	p.N849Kfs*32	ENST00000374690	NM_000044.3	847	aga/agAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			204	166	301	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0048299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	180	608	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			25	273	471	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0048299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			28	122	237	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0048299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			15	100	180	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411937	63411937	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	340	639	0	ENST00000330258.3:c.1230G>A	p.Trp410Ter	p.W410*	ENST00000330258	NM_152424.3	410	tgG/tgA																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970924	70970924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	256	482	0	ENST00000276594.2:c.1337G>A	p.Arg446Gln	p.R446Q	ENST00000276594	NM_024504.3	446	cGg/cAg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134513	41134513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048299-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			864	218	393	0	ENST00000379561.5:c.1115A>G	p.Glu372Gly	p.E372G	ENST00000379561	NM_002015.3	372	gAa/gGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0049036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	94	301	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0049036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	240	389	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	70	239	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	391	511	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	164	229	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953890	17953890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	778	639	1	ENST00000458235.1:c.512C>T	p.Ala171Val	p.A171V	ENST00000458235	NM_000215.3	171	gCc/gTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42042125	42042125	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	40	440	1	ENST00000219905.7:c.6324del	p.Lys2108AsnfsTer5	p.K2108Nfs*5	ENST00000219905	NM_001164273.1	2107	cAa/ca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647458	117647458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	39	426	1	ENST00000368508.3:c.5486G>T	p.Arg1829Ile	p.R1829I	ENST00000368508	NM_002944.2	1829	aGa/aTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	61	442	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	33	304	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	73	551	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	42	316	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	82	615	1	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	77	666	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
LATS1	9113	MSKCC	GRCh37	6	150022976	150022976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	59	456	0	ENST00000253339.5:c.287G>A	p.Arg96Gln	p.R96Q	ENST00000253339		96	cGg/cAg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610439	10610439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202181679		P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	71	730	0	ENST00000171111.5:c.271G>A	p.Ala91Thr	p.A91T	ENST00000171111	NM_203500.1	91	Gcc/Acc																																																																														
NF1	4763	MSKCC	GRCh37	17	29661945	29661945	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	67	501	1	ENST00000358273.4:c.5902C>T	p.Arg1968Ter	p.R1968*	ENST00000358273	NM_001042492.2	1968	Cga/Tga																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429797	78429797	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	53	361	0	ENST00000370768.2:c.991C>T	p.Arg331Ter	p.R331*	ENST00000370768	NM_003902.3	331	Cga/Tga																																																																														
CASP8	841	MSKCC	GRCh37	2	202141632	202141632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	33	373	0	ENST00000358485.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000358485	NM_001080125.1	307	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557837	187557837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184443677		P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	49	455	1	ENST00000441802.2:c.3874G>A	p.Glu1292Lys	p.E1292K	ENST00000441802	NM_005245.3	1292	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	29	436	2	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29654553	29654553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	31	255	0	ENST00000358273.4:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000358273	NM_001042492.2	1769	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913784	32913784	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	44	416	0	ENST00000380152.3:c.5297del	p.Asn1766IlefsTer11	p.N1766Ifs*11	ENST00000380152		1764	tcA/tc																																																																														
EP300	2033	MSKCC	GRCh37	22	41573224	41573224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	52	694	1	ENST00000263253.7:c.5509C>T	p.Arg1837Trp	p.R1837W	ENST00000263253	NM_001429.3	1837	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133248859	133248859	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149296223		P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	78	580	0	ENST00000320574.5:c.1736G>A	p.Arg579His	p.R579H	ENST00000320574	NM_006231.2	579	cGc/cAc																																																																														
KDR	3791	MSKCC	GRCh37	4	55958789	55958789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	63	525	0	ENST00000263923.4:c.3064C>T	p.Arg1022Ter	p.R1022*	ENST00000263923	NM_002253.2	1022	Cga/Tga																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511155	148511155	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	72	445	0	ENST00000320356.2:c.1747C>T	p.Arg583Ter	p.R583*	ENST00000320356	NM_004456.4	583	Cga/Tga																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38631981	38631981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	61	587	5	ENST00000299084.4:c.471delT	p.Gln158SerfsTer16	p.Q158Sfs*16	ENST00000299084	NM_152594.2	156	cTt/ct																																																																														
MSH3	4437	MSKCC	GRCh37	5	80150077	80150077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	58	540	0	ENST00000265081.6:c.2942C>T	p.Thr981Met	p.T981M	ENST00000265081	NM_002439.4	981	aCg/aTg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326204	62326204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	57	672	2	ENST00000508582.2:c.3292G>A	p.Ala1098Thr	p.A1098T	ENST00000508582		1098	Gcg/Acg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	75	555	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041261	29041262	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	31	383	0	ENST00000282397.4:c.166dupG	p.Glu56GlyfsTer5	p.E56Gfs*5	ENST00000282397	NM_002019.4	56	gaa/gGaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645252	67645252	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	76	557	0	ENST00000264010.4:c.517G>T	p.Gly173Ter	p.G173*	ENST00000264010	NM_006565.3	173	Gga/Tga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98215833	98215833	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147025073		P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	55	540	0	ENST00000331920.6:c.3376G>A	p.Val1126Ile	p.V1126I	ENST00000331920	NM_000264.3	1126	Gtc/Atc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001523	150001523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	48	436	0	ENST00000253339.5:c.2081G>A	p.Arg694His	p.R694H	ENST00000253339		694	cGt/cAt																																																																														
RET	5979	MSKCC	GRCh37	10	43615023	43615023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	47	615	0	ENST00000355710.3:c.2437C>T	p.Arg813Trp	p.R813W	ENST00000355710	NM_020975.4	813	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224339	36224340	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	55	755	1	ENST00000222270.7:c.6895dupC	p.Arg2299ProfsTer4	p.R2299Pfs*4	ENST00000222270	NM_014727.1	2297	gcc/gCcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224183	36224183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	76	585	0	ENST00000222270.7:c.6733G>A	p.Val2245Met	p.V2245M	ENST00000222270	NM_014727.1	2245	Gtg/Atg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564686	86564686	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	57	671	0	ENST00000274376.6:c.422del	p.Pro141LeufsTer33	p.P141Lfs*33	ENST00000274376	NM_002890.2	140	Ccc/cc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48032847	48032847	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	56	369	0	ENST00000234420.5:c.3646+1G>A		p.X1216_splice	ENST00000234420	NM_000179.2	1216																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100282	8100282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	61	672	0	ENST00000346208.3:c.256C>T	p.Arg86Cys	p.R86C	ENST00000346208		86	Cgc/Tgc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798154	45798154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	62	618	0	ENST00000372115.3:c.655G>A	p.Gly219Ser	p.G219S	ENST00000372115	NM_001048171.1	219	Ggt/Agt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692768	89692768	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	52	409	1	ENST00000371953.3:c.254-2A>G		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
LMO1	4004	MSKCC	GRCh37	11	8252007	8252007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	76	660	0	ENST00000335790.3:c.70T>C	p.Cys24Arg	p.C24R	ENST00000335790	NM_002315.2	24	Tgt/Cgt																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196644	67196644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	67	561	0	ENST00000312629.5:c.173G>A	p.Gly58Asp	p.G58D	ENST00000312629	NM_003952.2	58	gGc/gAc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480085	50480085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	54	591	0	ENST00000394963.4:c.319C>T	p.Gln107Ter	p.Q107*	ENST00000394963	NM_003076.4	107	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	49039362	49039362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	46	554	0	ENST00000267163.4:c.2347C>T	p.Pro783Ser	p.P783S	ENST00000267163	NM_000321.2	783	Cct/Tct																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713260	43713260	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	102	739	0	ENST00000382044.4:c.4213C>T	p.Arg1405Ter	p.R1405*	ENST00000382044	NM_001141980.1	1405	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222906	5222906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	65	574	0	ENST00000357368.4:c.2897C>T	p.Thr966Met	p.T966M	ENST00000357368	NM_002850.3	966	aCg/aTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265001	10265001	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146467216		P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	56	390	0	ENST00000340748.4:c.1939G>A	p.Ala647Thr	p.A647T	ENST00000340748		647	Gcc/Acc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366128	15366128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	57	455	2	ENST00000263377.2:c.2027G>A	p.Arg676Gln	p.R676Q	ENST00000263377	NM_058243.2	676	cGg/cAg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256722	19256722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	60	660	2	ENST00000162023.5:c.991G>A	p.Gly331Ser	p.G331S	ENST00000162023		331	Ggc/Agc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39741486	39741486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	46	373	0	ENST00000361337.2:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000361337	NM_003286.2	458	cGg/cAg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927417	49927417	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	54	654	0	ENST00000296474.3:c.3887T>C	p.Leu1296Pro	p.L1296P	ENST00000296474	NM_002447.2	1296	cTt/cCt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670049	86670049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	60	371	0	ENST00000274376.6:c.1846T>C	p.Cys616Arg	p.C616R	ENST00000274376	NM_002890.2	616	Tgt/Cgt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149436861	149436861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	44	528	4	ENST00000286301.3:c.2308G>A	p.Ala770Thr	p.A770T	ENST00000286301	NM_005211.3	770	Gct/Act																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839711	27839711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	50	470	0	ENST00000328488.2:c.383C>T	p.Ala128Val	p.A128V	ENST00000328488	NM_003533.2	128	gCg/gTg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552769	106552770	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	58	465	0	ENST00000369096.4:c.740_741del	p.Glu247ValfsTer23	p.E247Vfs*23	ENST00000369096	NM_001198.3	245	aAG/a																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151960177	151960177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	49	328	0	ENST00000262189.6:c.1223C>T	p.Thr408Met	p.T408M	ENST00000262189	NM_170606.2	408	aCg/aTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98218659	98218659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	49	367	0	ENST00000331920.6:c.3205G>A	p.Gly1069Ser	p.G1069S	ENST00000331920	NM_000264.3	1069	Ggc/Agc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922958	44922958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	70	530	0	ENST00000377967.4:c.1819G>A	p.Val607Met	p.V607M	ENST00000377967	NM_021140.2	607	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	99	327	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0049460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	97	347	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936393		P-0049460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	77	248	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	135	512	0	ENST00000269305.4:c.577C>G	p.His193Asp	p.H193D	ENST00000269305	NM_001126112.2	193	Cat/Gat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100041	157100055	+	inframe_deletion	In_Frame_Del	DEL	AGGAGGAGCAGGAGC	AGGAGGAGCAGGAGC	-			P-0049460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	11	41	1	ENST00000346085.5:c.993_1007delAGGAGGAGCAGGAGC	p.Gly333_Gly337del	p.G333_G337del	ENST00000346085	NM_020732.3	326	ggAGGAGGAGCAGGAGCa/gga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971060	21971060	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	94	342	0	ENST00000304494.5:c.298del	p.Ala100ProfsTer46	p.A100Pfs*46	ENST00000304494	NM_000077.4	100	Gcc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971060	21971060	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	94	342	0	ENST00000304494.5:c.298del	p.Ala100ProfsTer46	p.A100Pfs*46	ENST00000304494	NM_000077.4	100	Gcc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971060	21971060	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	94	342	0	ENST00000304494.5:c.298del	p.Ala100ProfsTer46	p.A100Pfs*46	ENST00000304494	NM_000077.4	100	Gcc/cc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045114	47045114	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	130	263	0	ENST00000329236.7:c.2122-1G>A		p.X708_splice	ENST00000329236	NM_001204466.1	708																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0049460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	81	276	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0049460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	81	276	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	49	523	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	62	377	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0049513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	24	594	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86679547	86679547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	32	347	0	ENST00000274376.6:c.2708G>T	p.Arg903Leu	p.R903L	ENST00000274376	NM_002890.2	903	cGa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0049522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	60	508	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	117	502	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
ATRX	546	MSKCC	GRCh37	X	76952169	76952172	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0049524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	125	237	0	ENST00000373344.5:c.263_266del	p.Lys88MetfsTer2	p.K88Mfs*2	ENST00000373344	NM_000489.3	88	aAGTAt/at																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061178	38061195	+	inframe_deletion	In_Frame_Del	DEL	GCTTCTCGCACTTGAAGC	GCTTCTCGCACTTGAAGC	-			P-0049525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	95	368	0	ENST00000250448.2:c.794_811delGCTTCAAGTGCGAGAAGC	p.Arg265_Lys270del	p.R265_K270del	ENST00000250448	NM_004496.3	265	cGCTTCAAGTGCGAGAAGCag/cag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828497	72828504	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGCTCG	CGAGCTCG	-			P-0049525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	45	715	0	ENST00000268489.5:c.8077_8084del	p.Arg2693GlyfsTer32	p.R2693Gfs*32	ENST00000268489	NM_006885.3	2693	CGAGCTCGg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4	531	637	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
RFWD2	0	MSKCC	GRCh37	1	175996761	175996761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	480	442	0	ENST00000367669.3:c.1676G>T	p.Cys559Phe	p.C559F	ENST00000367669	NM_022457.5	559	tGc/tTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48955571	48955571	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs139500527		P-0049526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	183	372	0	ENST00000267163.4:c.1687T>G	p.Trp563Gly	p.W563G	ENST00000267163	NM_000321.2	563	Tgg/Ggg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374915	45374915	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	391	514	1	ENST00000262160.6:c.928A>T	p.Arg310Trp	p.R310W	ENST00000262160	NM_005901.5	310	Agg/Tgg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280041	66280041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	216	295	0	ENST00000273854.3:c.1648G>T	p.Val550Phe	p.V550F	ENST00000273854	NM_004439.5	550	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	76	653	1	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78432581	78432581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	39	465	0	ENST00000370768.2:c.402A>G	p.Ile134Met	p.I134M	ENST00000370768	NM_003902.3	134	atA/atG																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683223	88683223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	38	341	0	ENST00000372037.3:c.1433G>C	p.Arg478Pro	p.R478P	ENST00000372037	NM_004329.2	478	cGt/cCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	118	661	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	100	441	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	105	380	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																														
APC	324	MSKCC	GRCh37	5	112175706	112175706	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	66	375	0	ENST00000257430.4:c.4415del	p.Val1472GlufsTer35	p.V1472Efs*35	ENST00000257430	NM_000038.5	1472	gTa/ga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153252021	153252021	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	35	396	0	ENST00000281708.4:c.986-1G>A		p.X329_splice	ENST00000281708	NM_033632.3	329																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249457	153249457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	79	506	0	ENST00000281708.4:c.1321C>G	p.Arg441Gly	p.R441G	ENST00000281708	NM_033632.3	441	Cgg/Ggg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777056	9777056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	123	706	0	ENST00000377346.4:c.820C>A	p.Leu274Met	p.L274M	ENST00000377346	NM_005026.3	274	Ctg/Atg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300123	15300123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	158	753	0	ENST00000263388.2:c.1153G>C	p.Gly385Arg	p.G385R	ENST00000263388	NM_000435.2	385	Ggt/Cgt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	302	419	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812259	212812259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	208	311	0	ENST00000342788.4:c.317G>A	p.Arg106His	p.R106H	ENST00000342788	NM_005235.2	106	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	13	387	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	378	693	0	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																														
MED12	9968	MSKCC	GRCh37	X	70342671	70342671	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	63	512	0	ENST00000374080.3:c.1432G>C	p.Asp478His	p.D478H	ENST00000374080		478	Gac/Cac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254920	16254920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	31	509	1	ENST00000375759.3:c.2185G>A	p.Val729Ile	p.V729I	ENST00000375759	NM_015001.2	729	Gtt/Att																																																																														
ID3	3399	MSKCC	GRCh37	1	23885884	23885884	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	114	486	0	ENST00000374561.5:c.34G>C	p.Glu12Gln	p.E12Q	ENST00000374561	NM_002167.4	12	Gag/Cag																																																																														
NF1	4763	MSKCC	GRCh37	17	29490386	29490386	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	27	382	0	ENST00000358273.4:c.471T>G	p.Ile157Met	p.I157M	ENST00000358273	NM_001042492.2	157	atT/atG																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157454171	157454171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	107	423	0	ENST00000346085.5:c.2381C>G	p.Ala794Gly	p.A794G	ENST00000346085	NM_020732.3	794	gCa/gGa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56409145	56409145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	174	326	0	ENST00000348428.3:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000348428	NM_006785.3	551	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644827	67644827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	200	458	0	ENST00000264010.4:c.92G>A	p.Gly31Glu	p.G31E	ENST00000264010	NM_006565.3	31	gGg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579360	7579363	+	frameshift_variant	Frame_Shift_Del	DEL	GAAA	GAAA	-			P-0049541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	611	615	1	ENST00000269305.4:c.324_327del	p.Phe109ValfsTer13	p.F109Vfs*13	ENST00000269305	NM_001126112.2	108	ggTTTC/gg																																																																														
BRAF	673	MSKCC	GRCh37	7	140487360	140487360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507472		P-0049590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	214	561	0	ENST00000288602.6:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000288602	NM_004333.4	389	Cgt/Tgt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37671997	37671997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	184	525	0	ENST00000447079.4:c.2782G>A	p.Glu928Lys	p.E928K	ENST00000447079	NM_015083.1	928	Gaa/Aaa																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119720928	119720928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	203	512	1	ENST00000316626.5:c.247G>A	p.Ala83Thr	p.A83T	ENST00000316626		83	Gcc/Acc																																																																														
REL	5966	MSKCC	GRCh37	2	61144108	61144108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	127	518	2	ENST00000295025.8:c.491C>T	p.Thr164Met	p.T164M	ENST00000295025	NM_002908.2	164	aCg/aTg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42839678	42839678	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	307	791	0	ENST00000398585.3:c.1561A>T	p.Ile521Phe	p.I521F	ENST00000398585	NM_001135099.1	521	Att/Ttt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	20	457	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	62	383	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40733217	40733217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	52	570	0	ENST00000373198.4:c.3589G>A	p.Glu1197Lys	p.E1197K	ENST00000373198	NM_133170.3	1197	Gaa/Aaa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030637	47030637	+	intron_variant	Intron	SNP	C	C	T			P-0049597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	144	1032	0	ENST00000329236.7:c.201+1740C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
RUNX1	861	MSKCC	GRCh37	21	36252856	36252856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0049597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	88	352	0	ENST00000300305.3:c.506G>C	p.Arg169Thr	p.R169T	ENST00000300305		169	aGa/aCa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983150	201983150	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	145	725	1	ENST00000359651.3:c.999G>A	p.Met333Ile	p.M333I	ENST00000359651		333	atG/atA																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349257	15349553	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	CTGGAGGAGAAAGGAAGGAGGGAGTCAGGAGGATGACCTAGCCACCCTGCAGCTACAAGCCCTCATACCCGCTACCAGCAGTCAGCCCCGTAGCCCTCCCCGTGGCTGACCCCTCATAGCGCTCACCCCGTCCACACAGCACTCAGGGCCCTACAGCTGAGTCCAGAGGACCACATGCCGACCAGCAGGGACGGGGCTCCCCCGCTGCCCCTCCCTGTCCAGGCTCCAGTCCCCCTTTCCCAGCTCCCTCAGGAGCTAATCCTTAGACCAGGGTCCCCACCAGGCCTCCAGACTCAC	CTGGAGGAGAAAGGAAGGAGGGAGTCAGGAGGATGACCTAGCCACCCTGCAGCTACAAGCCCTCATACCCGCTACCAGCAGTCAGCCCCGTAGCCCTCCCCGTGGCTGACCCCTCATAGCGCTCACCCCGTCCACACAGCACTCAGGGCCCTACAGCTGAGTCCAGAGGACCACATGCCGACCAGCAGGGACGGGGCTCCCCCGCTGCCCCTCCCTGTCCAGGCTCCAGTCCCCCTTTCCCAGCTCCCTCAGGAGCTAATCCTTAGACCAGGGTCCCCACCAGGCCTCCAGACTCAC	-			P-0049597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	34	503	1	ENST00000263377.2:c.4020+1_4021-1del		p.X1340_splice	ENST00000263377	NM_058243.2	1340																																																																															
CIC	23152	MSKCC	GRCh37	19	42796325	42796325	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	126	1084	0	ENST00000575354.2:c.2974C>G	p.Gln992Glu	p.Q992E	ENST00000575354	NM_015125.3	992	Cag/Gag																																																																														
TEK	7010	MSKCC	GRCh37	9	27213589	27213589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	230	476	0	ENST00000380036.4:c.2985G>C	p.Lys995Asn	p.K995N	ENST00000380036	NM_000459.3	995	aaG/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0049598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	433	987	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68771344	68771344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	81	615	0	ENST00000261769.5:c.26C>T	p.Ser9Leu	p.S9L	ENST00000261769	NM_004360.3	9	tCg/tTg																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428225	33428225	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	101	723	0	ENST00000335858.7:c.562C>T	p.Arg188Ter	p.R188*	ENST00000335858	NM_133629.2	188	Cga/Tga																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115275290	115275290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	29	733	0	ENST00000438362.2:c.1123G>C	p.Glu375Gln	p.E375Q	ENST00000438362	NM_001242891.1	375	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426889	49426890	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AA			P-0049598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	288	805	0	ENST00000301067.7:c.11598_11599delinsTT	p.Gln3866_Gln3867delinsHisTer	p.Q3866_Q3867delinsH*	ENST00000301067	NM_003482.3	3866	caGCaa/caTTaa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89865574	89865574	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0049598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	514	706	0	ENST00000389301.3:c.893G>C	p.Trp298Ser	p.W298S	ENST00000389301	NM_000135.2	298	tGg/tCg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16062082	16062082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	92	475	0	ENST00000268712.3:c.724G>A	p.Glu242Lys	p.E242K	ENST00000268712	NM_006311.3	242	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16062148	16062148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	241	710	1	ENST00000268712.3:c.658G>A	p.Glu220Lys	p.E220K	ENST00000268712	NM_006311.3	220	Gag/Aag																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24159101	24159101	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	68	652	0	ENST00000263121.7:c.773C>A	p.Ser258Ter	p.S258*	ENST00000263121	NM_003073.3	258	tCa/tAa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138383966	138383966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	76	601	1	ENST00000289153.2:c.2584G>C	p.Asp862His	p.D862H	ENST00000289153	NM_006219.2	862	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	635	1092	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589149	67589151	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0049618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	96	211	0	ENST00000274335.5:c.1138_1140delTTA	p.Leu380del	p.L380del	ENST00000274335		379	aaATTa/aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140494169	140494169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	320	567	0	ENST00000288602.6:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000288602	NM_004333.4	360	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	471	843	0	ENST00000269305.4:c.395A>C	p.Lys132Thr	p.K132T	ENST00000269305	NM_001126112.2	132	aAg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	436	739	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0049620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	137	358	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182252	38182252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	97	526	1	ENST00000396334.3:c.688C>T	p.Arg230Cys	p.R230C	ENST00000396334	NM_002468.4	230	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	197	406	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3860770	3860770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	135	373	0	ENST00000262367.5:c.809C>A	p.Thr270Asn	p.T270N	ENST00000262367	NM_004380.2	270	aCt/aAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	257	421	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41513750	41513753	+	frameshift_variant	Frame_Shift_Del	DEL	ACTG	ACTG	-			P-0049621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	42	594	1	ENST00000263253.7:c.659_662del	p.Thr220SerfsTer16	p.T220Sfs*16	ENST00000263253	NM_001429.3	218	ttACTG/tt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	52	430	0				ENST00000310581	NM_198253.2																																																																																
NSD1	64324	MSKCC	GRCh37	5	176637723	176637723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	80	596	0	ENST00000439151.2:c.2323C>G	p.Gln775Glu	p.Q775E	ENST00000439151	NM_022455.4	775	Caa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578197	7578197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	130	623	0	ENST00000269305.4:c.652G>T	p.Val218Leu	p.V218L	ENST00000269305	NM_001126112.2	218	Gtg/Ttg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	158	581	0	ENST00000304494.5:c.151delG	p.Val51SerfsTer2	p.V51Sfs*2	ENST00000304494	NM_000077.4	51	Gtc/tc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	158	581	0	ENST00000304494.5:c.151delG	p.Val51SerfsTer2	p.V51Sfs*2	ENST00000304494	NM_000077.4	51	Gtc/tc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	158	581	0	ENST00000304494.5:c.151delG	p.Val51SerfsTer2	p.V51Sfs*2	ENST00000304494	NM_000077.4	51	Gtc/tc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316389	14316389	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	144	452	0	ENST00000256196.4:c.216A>T	p.Gln72His	p.Q72H	ENST00000256196		72	caA/caT																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981869	101981869	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	186	741	0	ENST00000282441.5:c.290A>G	p.Lys97Arg	p.K97R	ENST00000282441	NM_001130145.2	97	aAg/aGg																																																																														
CBFB	865	MSKCC	GRCh37	16	67116161	67116161	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	85	370	0	ENST00000412916.2:c.445A>G	p.Arg149Gly	p.R149G	ENST00000412916		149	Agg/Ggg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980507	7980513	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	CTGAGCT	CTGAGCT	-			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	63	517	0	ENST00000319144.4:c.1072-2_1076del		p.X358_splice	ENST00000319144	NM_001139.2	358																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45395773	45395773	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	46	366	0	ENST00000262160.6:c.361A>T	p.Lys121Ter	p.K121*	ENST00000262160	NM_005901.5	121	Aaa/Taa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438575	52438575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	92	545	0	ENST00000460680.1:c.1144G>A	p.Gly382Ser	p.G382S	ENST00000460680	NM_004656.3	382	Ggc/Agc																																																																														
ATR	545	MSKCC	GRCh37	3	142275319	142275319	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	44	504	0	ENST00000350721.4:c.1984A>T	p.Ser662Cys	p.S662C	ENST00000350721	NM_001184.3	662	Agc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187527316	187527317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	201	523	0	ENST00000441802.2:c.10257_10258insT	p.Arg3420Ter	p.R3420*	ENST00000441802	NM_005245.3	3419	-/T																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068086	94068086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	41	258	0	ENST00000369303.4:c.876G>C	p.Gln292His	p.Q292H	ENST00000369303	NM_004440.3	292	caG/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	60	310	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0049625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	48	246	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0049625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	52	237	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	29	199	0	ENST00000263967.3:c.1034A>G	p.Asn345Ser	p.N345S	ENST00000263967	NM_006218.2	345	aAt/aGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522449	187522449	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	71	227	1	ENST00000441802.2:c.11614C>T	p.Arg3872Ter	p.R3872*	ENST00000441802	NM_005245.3	3872	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040962	47040963	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0049625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	117	200	0	ENST00000329236.7:c.1261_1262del	p.Ala421ProfsTer18	p.A421Pfs*18	ENST00000329236	NM_001204466.1	420	CGc/c																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274274	5274274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	84	301	0	ENST00000357368.4:c.173G>A	p.Gly58Asp	p.G58D	ENST00000357368	NM_002850.3	58	gGt/gAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0049628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	111	223	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	21	601	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057810	27057811	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAAC			P-0049628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	327	686	0	ENST00000324856.7:c.1521_1524dup	p.Pro509ThrfsTer115	p.P509Tfs*115	ENST00000324856	NM_006015.4	506	-/CAAC																																																																														
STK11	6794	MSKCC	GRCh37	19	1222000	1222001	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0049628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	191	719	1	ENST00000326873.7:c.915_916delinsCT	p.Gln305_His306delinsHisTyr	p.Q305_H306delinsHY	ENST00000326873	NM_000455.4	305	caGCac/caCTac																																																																														
UPF1	5976	MSKCC	GRCh37	19	18975018	18975018	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	149	470	0	ENST00000262803.5:c.2815G>C	p.Glu939Gln	p.E939Q	ENST00000262803	NM_002911.3	939	Gag/Cag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69011980	69011980	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	164	451	0	ENST00000288368.4:c.2617C>G	p.Leu873Val	p.L873V	ENST00000288368	NM_024870.2	873	Cta/Gta																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045696	47045697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	256	893	0	ENST00000329236.7:c.2343_2344insT	p.Asn782Ter	p.N782*	ENST00000329236	NM_001204466.1	781	-/T																																																																														
ATRX	546	MSKCC	GRCh37	X	76938814	76938814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	139	428	0	ENST00000373344.5:c.1934C>T	p.Ser645Leu	p.S645L	ENST00000373344	NM_000489.3	645	tCa/tTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	90	276	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	383	511	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438206	56438207	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	260	664	0	ENST00000407977.2:c.786_787del	p.Gly263GlufsTer18	p.G263Efs*18	ENST00000407977		262	tcAGgg/tcgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	50	584	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	245	651	7	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	218	607	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862749	9862749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150316865		P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	221	515	0	ENST00000330684.3:c.2554G>A	p.Val852Met	p.V852M	ENST00000330684	NM_001134407.1	852	Gtg/Atg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	53	127	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	188	438	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345769	152345769	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	63	197	0	ENST00000359321.1:c.801del	p.Lys267AsnfsTer30	p.K267Nfs*30	ENST00000359321	NM_005431.1	267	aaA/aa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100210	157100210	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	30	69	0	ENST00000346085.5:c.1151delG	p.Gly384AlafsTer46	p.G384Afs*46	ENST00000346085	NM_020732.3	383	Ggg/gg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987215	2987215	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	138	374	0	ENST00000396946.4:c.214C>T	p.Arg72Ter	p.R72*	ENST00000396946	NM_032415.4	72	Cga/Tga																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	128	385	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs765875917		P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	99	256	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912075	50912077	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	324	695	1	ENST00000440232.2:c.1812_1814del	p.Ser605del	p.S605del	ENST00000440232	NM_002691.3	603	ttCTCc/ttc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800564	32800564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	278	687	4	ENST00000374899.4:c.983C>T	p.Ala328Val	p.A328V	ENST00000374899	NM_018833.2	328	gCg/gTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	287	634	5	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910533	29910533	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	54	221	0	ENST00000376809.5:c.74-1G>T		p.X25_splice	ENST00000376809	NM_002116.7	25																																																																															
CARD11	84433	MSKCC	GRCh37	7	2984022	2984022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	220	471	0	ENST00000396946.4:c.508C>T	p.Arg170Cys	p.R170C	ENST00000396946	NM_032415.4	170	Cgc/Tgc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28599021	28599021	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	81	414	0	ENST00000241453.7:c.2267A>G	p.His756Arg	p.H756R	ENST00000241453	NM_004119.2	756	cAt/cGt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	321	789	5	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527742	157527742	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	151	378	1	ENST00000346085.5:c.5471del	p.Gly1824ValfsTer27	p.G1824Vfs*27	ENST00000346085	NM_020732.3	1823	Ggg/gg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923606	39923606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	257	699	0	ENST00000378444.4:c.3485G>A	p.Arg1162His	p.R1162H	ENST00000378444	NM_001123385.1	1162	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779755	3779755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	272	661	0	ENST00000262367.5:c.5293del	p.Gln1765ArgfsTer6	p.Q1765Rfs*6	ENST00000262367	NM_004380.2	1765	Cag/ag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162237	47162237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	137	356	1	ENST00000409792.3:c.3889C>T	p.Arg1297Cys	p.R1297C	ENST00000409792	NM_014159.6	1297	Cgt/Tgt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981632	70981632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	279	685	0	ENST00000276594.2:c.464C>T	p.Ala155Val	p.A155V	ENST00000276594	NM_024504.3	155	gCg/gTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391798	139391799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	271	805	0	ENST00000277541.6:c.6392dup	p.Thr2132HisfsTer136	p.T2132Hfs*136	ENST00000277541	NM_017617.3	2131	ggc/ggGc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360585	118360587	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	133	317	0	ENST00000534358.1:c.4566_4568del	p.Lys1523del	p.K1523del	ENST00000534358	NM_005933.3	1520	AAG/-																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40354455	40354455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	269	740	0	ENST00000293328.3:c.2140G>A	p.Ala714Thr	p.A714T	ENST00000293328	NM_012448.3	714	Gca/Aca																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599211	28599211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	270	773	0	ENST00000253063.3:c.661del	p.Asp221MetfsTer26	p.D221Mfs*26	ENST00000253063	NM_031459.4	219	gaG/ga																																																																														
MPL	4352	MSKCC	GRCh37	1	43805785	43805785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	234	595	0	ENST00000372470.3:c.841C>T	p.Pro281Ser	p.P281S	ENST00000372470	NM_005373.2	281	Cct/Tct																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651090	206651090	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	243	661	1	ENST00000367120.3:c.702-2A>G		p.X234_splice	ENST00000367120	NM_014002.3	234																																																																															
WT1	7490	MSKCC	GRCh37	11	32456560	32456560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	61	130	0	ENST00000332351.3:c.332C>T	p.Pro111Leu	p.P111L	ENST00000332351	NM_024426.4	111	cCg/cTg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456620	32456620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	116	298	0	ENST00000332351.3:c.272G>A	p.Gly91Asp	p.G91D	ENST00000332351	NM_024426.4	91	gGc/gAc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646522	23646522	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	149	364	0	ENST00000261584.4:c.1345A>G	p.Lys449Glu	p.K449E	ENST00000261584	NM_024675.3	449	Aaa/Gaa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5229665	5229665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	21	42	0	ENST00000357368.4:c.2186C>T	p.Ala729Val	p.A729V	ENST00000357368	NM_002850.3	729	gCg/gTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945933	17945933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	318	780	0	ENST00000458235.1:c.2006T>C	p.Leu669Pro	p.L669P	ENST00000458235	NM_000215.3	669	cTg/cCg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218093	36218095	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	149	328	0	ENST00000222270.7:c.4042_4044del	p.Asn1348del	p.N1348del	ENST00000222270	NM_014727.1	1347	gACAac/gac																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463305	25463305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	164	464	0	ENST00000264709.3:c.2188C>T	p.Leu730Phe	p.L730F	ENST00000264709	NM_175629.2	730	Ctc/Ttc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39212993	39212993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	194	517	0	ENST00000402219.2:c.3974C>T	p.Pro1325Leu	p.P1325L	ENST00000402219	NM_005633.3	1325	cCa/cTa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47672722	47672722	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	90	361	0	ENST00000233146.2:c.1312A>T	p.Thr438Ser	p.T438S	ENST00000233146	NM_000251.2	438	Act/Tct																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023692	31023692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	214	538	0	ENST00000375687.4:c.3177G>T	p.Met1059Ile	p.M1059I	ENST00000375687	NM_015338.5	1059	atG/atT																																																																														
EP300	2033	MSKCC	GRCh37	22	41546005	41546005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	246	575	0	ENST00000263253.7:c.2620C>A	p.Gln874Lys	p.Q874K	ENST00000263253	NM_001429.3	874	Cag/Aag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610568	52610568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	96	278	0	ENST00000394830.3:c.3605C>T	p.Thr1202Ile	p.T1202I	ENST00000394830	NM_018313.4	1202	aCa/aTa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149439392	149439392	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	190	495	0	ENST00000286301.3:c.2003A>G	p.Tyr668Cys	p.Y668C	ENST00000286301	NM_005211.3	668	tAt/tGt																																																																														
FYN	2534	MSKCC	GRCh37	6	112024144	112024144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	118	320	0	ENST00000368678.4:c.641A>G	p.Tyr214Cys	p.Y214C	ENST00000368678		214	tAc/tGc																																																																														
SMO	6608	MSKCC	GRCh37	7	128851990	128851990	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	253	665	1	ENST00000249373.3:c.2066del	p.Pro689LeufsTer87	p.P689Lfs*87	ENST00000249373	NM_005631.4	688	Ccc/cc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031713	69031713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	130	381	0	ENST00000288368.4:c.3468C>A	p.Asp1156Glu	p.D1156E	ENST00000288368	NM_024870.2	1156	gaC/gaA																																																																														
JAK2	3717	MSKCC	GRCh37	9	5064943	5064943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	55	260	0	ENST00000381652.3:c.1117T>C	p.Tyr373His	p.Y373H	ENST00000381652	NM_004972.3	373	Tat/Cat																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80336307	80336307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	94	267	0	ENST00000286548.4:c.1012C>A	p.Arg338Ser	p.R338S	ENST00000286548	NM_002072.3	338	Cgc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	29	628	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	30	395	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851318	63851318	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	47	647	0	ENST00000279873.7:c.2096T>A	p.Val699Glu	p.V699E	ENST00000279873	NM_032199.2	699	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578450	7578460	+	frameshift_variant	Frame_Shift_Del	DEL	CATGGCGCGGA	CATGGCGCGGA	-			P-0049635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	134	987	0	ENST00000269305.4:c.470_480del	p.Val157GlyfsTer20	p.V157Gfs*20	ENST00000269305	NM_001126112.2	157	gTCCGCGCCATG/g																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022628	31022628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	44	696	0	ENST00000375687.4:c.2113G>A	p.Glu705Lys	p.E705K	ENST00000375687	NM_015338.5	705	Gag/Aag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168476	56168476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	24	148	0	ENST00000399503.3:c.1432G>A	p.Glu478Lys	p.E478K	ENST00000399503	NM_005921.1	478	Gag/Aag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681120	117681120	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0049635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	46	364	0	ENST00000368508.3:c.3500T>A	p.Leu1167Ter	p.L1167*	ENST00000368508	NM_002944.2	1167	tTa/tAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0049636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	14	494	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	76	383	1	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692961	89692961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	61	468	0	ENST00000371953.3:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000371953	NM_000314.4	149	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097665	27097665	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0049636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	39	461	0	ENST00000324856.7:c.3254C>G	p.Ser1085Ter	p.S1085*	ENST00000324856	NM_006015.4	1085	tCa/tGa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589630	67589645	+	protein_altering_variant	In_Frame_Del	DEL	AGATTATATGAAGAAT	AGATTATATGAAGAAT	G			P-0049636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	12	180	0	ENST00000274335.5:c.1393_1408delinsG	p.Arg465_Tyr470delinsAsp	p.R465_Y470delinsD	ENST00000274335		465	AGATTATATGAAGAATat/Gat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27093058	27093058	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0049637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	48	267	0	ENST00000324856.7:c.2988+1G>T		p.X996_splice	ENST00000324856	NM_006015.4	996																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849872	156849872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	99	631	1	ENST00000524377.1:c.2128G>A	p.Val710Met	p.V710M	ENST00000524377	NM_002529.3	710	Gtg/Atg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604776	48604776	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	28	312	0	ENST00000342988.3:c.1598T>G	p.Leu533Arg	p.L533R	ENST00000342988	NM_005359.5	533	cTc/cGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41569680	41569680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	37	181	0	ENST00000263253.7:c.4671C>A	p.Ser1557Arg	p.S1557R	ENST00000263253	NM_001429.3	1557	agC/agA																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713544	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	93	480	0	ENST00000359013.4:c.944A>G	p.Glu315Gly	p.E315G	ENST00000359013	NM_001024847.2	315	gAg/gGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	225	573	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	54	386	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053589	37053589	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	45	332	0	ENST00000231790.2:c.676C>T	p.Arg226Ter	p.R226*	ENST00000231790	NM_000249.3	226	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277225	41277225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	44	223	0	ENST00000349496.5:c.1694G>A	p.Arg565His	p.R565H	ENST00000349496	NM_001904.3	565	cGc/cAc																																																																														
MGA	23269	MSKCC	GRCh37	15	41991316	41991316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	100	397	1	ENST00000219905.7:c.2147C>T	p.Thr716Ile	p.T716I	ENST00000219905	NM_001164273.1	716	aCt/aTt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210824	2210824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	96	514	3	ENST00000398665.3:c.1321G>A	p.Val441Met	p.V441M	ENST00000398665	NM_032482.2	441	Gtg/Atg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662029	227662029	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	98	649	0	ENST00000305123.5:c.1426C>G	p.Leu476Val	p.L476V	ENST00000305123	NM_005544.2	476	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	74	747	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
JUN	3725	MSKCC	GRCh37	1	59248409	59248409	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	37	472	0	ENST00000371222.2:c.334G>C	p.Glu112Gln	p.E112Q	ENST00000371222	NM_002228.3	112	Gag/Cag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564698	86564698	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	58	620	0	ENST00000274376.6:c.434del	p.Pro145LeufsTer29	p.P145Lfs*29	ENST00000274376	NM_002890.2	144	Ccc/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405180	139405180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	66	870	1	ENST00000277541.6:c.2665G>A	p.Gly889Ser	p.G889S	ENST00000277541	NM_017617.3	889	Ggc/Agc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11169359	11169359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	26	386	0	ENST00000361445.4:c.7516G>C	p.Asp2506His	p.D2506H	ENST00000361445	NM_004958.3	2506	Gat/Cat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257746	16257746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	36	391	0	ENST00000375759.3:c.5011G>A	p.Glu1671Lys	p.E1671K	ENST00000375759	NM_015001.2	1671	Gag/Aag																																																																														
CASP8	841	MSKCC	GRCh37	2	202136259	202136259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	40	420	0	ENST00000358485.4:c.503C>T	p.Ser168Leu	p.S168L	ENST00000358485	NM_001080125.1	168	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	37	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	71	498	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894904	101894904	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56014374		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	40	332	0	ENST00000374994.4:c.457G>A	p.Val153Ile	p.V153I	ENST00000374994	NM_004612.2	153	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112175970	112175970	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	21	213	0	ENST00000257430.4:c.4682delA	p.Lys1561ArgfsTer4	p.K1561Rfs*4	ENST00000257430	NM_000038.5	1560	gAa/ga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	42	296	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	97	574	0	ENST00000269305.4:c.800G>A	p.Arg267Gln	p.R267Q	ENST00000269305	NM_001126112.2	267	cGg/cAg																																																																														
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	51	480	2	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	100	824	5	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465606	99465606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	65	503	0	ENST00000268035.6:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000268035	NM_000875.3	811	Gag/Aag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	80	795	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	63	430	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721049	176721049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	69	491	0	ENST00000439151.2:c.6680C>T	p.Pro2227Leu	p.P2227L	ENST00000439151	NM_022455.4	2227	cCg/cTg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937914	36937914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	104	1035	0	ENST00000361632.4:c.922C>T	p.Arg308Cys	p.R308C	ENST00000361632		308	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807363	3807364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	38	337	0	ENST00000262367.5:c.3623dupC	p.Gln1209ThrfsTer25	p.Q1209Tfs*25	ENST00000262367	NM_004380.2	1208	cca/ccCa																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278073	18278073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	108	805	0	ENST00000222254.8:c.1693C>T	p.Pro565Ser	p.P565S	ENST00000222254	NM_005027.3	565	Ccg/Tcg																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	53	376	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216725	2216725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200144638		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	132	953	5	ENST00000398665.3:c.2369C>T	p.Thr790Met	p.T790M	ENST00000398665	NM_032482.2	790	aCg/aTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	10	132	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185165720	185165720	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	64	327	0	ENST00000265026.3:c.999delA	p.Val334LeufsTer14	p.V334Lfs*14	ENST00000265026	NM_004721.4	332	gAa/ga																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42839785	42839785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	56	478	0	ENST00000398585.3:c.1454C>T	p.Ser485Leu	p.S485L	ENST00000398585	NM_001135099.1	485	tCg/tTg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617680	39617680	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	37	280	0	ENST00000262039.4:c.1869del	p.Phe623LeufsTer43	p.F623Lfs*43	ENST00000262039	NM_002647.2	622	Ttt/tt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082313	16082314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	109	923	3	ENST00000281043.3:c.134dupC	p.Glu47GlyfsTer8	p.E47Gfs*8	ENST00000281043	NM_005378.4	43	acc/aCcc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137271	64137271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	105	852	0	ENST00000334205.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000334205	NM_003942.2	568	aCg/aTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	72	561	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs765875917		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	22	139	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	121	994	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	113	842	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	42	390	0	ENST00000282397.4:c.166delG	p.Glu56LysfsTer12	p.E56Kfs*12	ENST00000282397	NM_002019.4	56	Gaa/aa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945757	38945757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	16	230	0	ENST00000357387.3:c.4469C>T	p.Thr1490Met	p.T1490M	ENST00000357387	NM_152756.3	1490	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435967	49435967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	121	715	1	ENST00000301067.7:c.6014G>A	p.Arg2005His	p.R2005H	ENST00000301067	NM_003482.3	2005	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	120	813	1	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48651591	48651591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	78	296	0	ENST00000376670.3:c.757C>T	p.Arg253Trp	p.R253W	ENST00000376670	NM_002049.3	253	Cgg/Tgg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	83	661	4	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484058	50484058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	90	559	1	ENST00000394963.4:c.908G>A	p.Arg303Gln	p.R303Q	ENST00000394963	NM_003076.4	303	cGa/cAa																																																																														
ALK	238	MSKCC	GRCh37	2	29416692	29416692	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	53	434	0	ENST00000389048.3:c.4261del	p.Val1421PhefsTer56	p.V1421Ffs*56	ENST00000389048	NM_004304.4	1421	Gtt/tt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288870	15288870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	53	358	0	ENST00000263388.2:c.3869C>T	p.Ala1290Val	p.A1290V	ENST00000263388	NM_000435.2	1290	gCg/gTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412248	63412248	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	91	439	0	ENST00000330258.3:c.919del	p.Asp307ThrfsTer3	p.D307Tfs*3	ENST00000330258	NM_152424.3	307	Gac/ac																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752347	55752347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	145	911	0	ENST00000284073.2:c.805C>T	p.Arg269Trp	p.R269W	ENST00000284073	NM_138962.2	269	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609768	117609768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	54	456	0	ENST00000368508.3:c.6931G>A	p.Ala2311Thr	p.A2311T	ENST00000368508	NM_002944.2	2311	Gca/Aca																																																																														
CBL	867	MSKCC	GRCh37	11	119155691	119155691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	66	440	1	ENST00000264033.4:c.1444C>T	p.Pro482Ser	p.P482S	ENST00000264033	NM_005188.3	482	Cct/Tct																																																																														
ARID2	196528	MSKCC	GRCh37	12	46233274	46233274	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	46	243	0	ENST00000334344.6:c.1496del	p.Pro499GlnfsTer7	p.P499Qfs*7	ENST00000334344	NM_152641.2	498	gCc/gc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32890601	32890601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	39	280	0	ENST00000380152.3:c.4C>T	p.Pro2Ser	p.P2S	ENST00000380152		2	Cct/Tct																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437838	110437838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	81	438	1	ENST00000375856.3:c.563C>T	p.Ala188Val	p.A188V	ENST00000375856	NM_003749.2	188	gCt/gTt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225347	2225347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201904294		P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	102	817	0	ENST00000326181.6:c.1432C>T	p.His478Tyr	p.H478Y	ENST00000326181	NM_032271.2	478	Cat/Tat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991448	72991448	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	122	769	0	ENST00000268489.5:c.2597T>C	p.Leu866Pro	p.L866P	ENST00000268489	NM_006885.3	866	cTg/cCg																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108208	8108208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	93	663	0	ENST00000585124.1:c.1016C>T	p.Ala339Val	p.A339V	ENST00000585124	NM_004217.3	339	gCc/gTc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12044509	12044509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	41	353	0	ENST00000353533.5:c.1132G>A	p.Ala378Thr	p.A378T	ENST00000353533	NM_003010.3	378	Gca/Aca																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18274112	18274112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	81	642	0	ENST00000222254.8:c.1330G>A	p.Ala444Thr	p.A444T	ENST00000222254	NM_005027.3	444	Gcc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222923	36222923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	130	936	1	ENST00000222270.7:c.5552G>T	p.Ser1851Ile	p.S1851I	ENST00000222270	NM_014727.1	1851	aGc/aTc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753281	42753281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	101	945	0	ENST00000222329.4:c.983C>A	p.Pro328His	p.P328H	ENST00000222329	NM_006494.2	328	cCc/cAc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47643489	47643489	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	78	490	0	ENST00000233146.2:c.997T>C	p.Cys333Arg	p.C333R	ENST00000233146	NM_000251.2	333	Tgt/Cgt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49939965	49939965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	135	823	1	ENST00000296474.3:c.1078G>A	p.Val360Met	p.V360M	ENST00000296474	NM_002447.2	360	Gtg/Atg																																																																														
KIT	3815	MSKCC	GRCh37	4	55594251	55594251	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	40	347	0	ENST00000288135.5:c.1954A>G	p.Asn652Asp	p.N652D	ENST00000288135	NM_000222.2	652	Aat/Gat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38971980	38971980	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	27	259	0	ENST00000357387.3:c.971G>A	p.Arg324Lys	p.R324K	ENST00000357387	NM_152756.3	324	aGg/aAg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738290	145738290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	121	995	1	ENST00000428558.2:c.2695G>T	p.Gly899Cys	p.G899C	ENST00000428558	NM_004260.3	899	Ggc/Tgc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760132	133760132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	69	703	0	ENST00000318560.5:c.2455C>T	p.Arg819Trp	p.R819W	ENST00000318560	NM_005157.4	819	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	281	704	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	159	596	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851286	156851286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	140	812	0	ENST00000524377.1:c.2243G>A	p.Arg748Gln	p.R748Q	ENST00000524377	NM_002529.3	748	cGg/cAg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710517	114710517	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0049662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	70	356	0	ENST00000543371.1:c.2T>A	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	aTg/aAg																																																																														
APC	324	MSKCC	GRCh37	5	112174745	112174745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	13	197	0	ENST00000257430.4:c.3454C>T	p.Gln1152Ter	p.Q1152*	ENST00000257430	NM_000038.5	1152	Cag/Tag																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748093	72748093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	83	545	0	ENST00000357731.5:c.85C>T	p.Pro29Ser	p.P29S	ENST00000357731	NM_173808.2	29	Ccc/Tcc																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0049663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	181	479	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	56	690	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317529	1317529	+	downstream_gene_variant	3'Flank	SNP	T	T	G			P-0049664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	56	552	0				ENST00000381566																																																																																	
FLT4	2324	MSKCC	GRCh37	5	180043438	180043438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	100	790	0	ENST00000261937.6:c.3148G>A	p.Val1050Met	p.V1050M	ENST00000261937	NM_182925.4	1050	Gtg/Atg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979529	7979529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	53	580	2	ENST00000319144.4:c.1496G>A	p.Arg499His	p.R499H	ENST00000319144	NM_001139.2	499	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	129	484	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950304	38950304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	27	384	1	ENST00000357387.3:c.3646C>T	p.Arg1216Cys	p.R1216C	ENST00000357387	NM_152756.3	1216	Cgt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245948	46245948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	21	269	0	ENST00000334344.6:c.4042G>A	p.Asp1348Asn	p.D1348N	ENST00000334344	NM_152641.2	1348	Gat/Aat																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198176	185198176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1393	102	517	0	ENST00000265026.3:c.2658C>A	p.Asp886Glu	p.D886E	ENST00000265026	NM_004721.4	886	gaC/gaA																																																																														
TEK	7010	MSKCC	GRCh37	9	27192559	27192559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	86	455	0	ENST00000380036.4:c.1562G>C	p.Arg521Pro	p.R521P	ENST00000380036	NM_000459.3	521	cGt/cCt																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612876	228612876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	391	847	0	ENST00000366696.1:c.151G>A	p.Glu51Lys	p.E51K	ENST00000366696	NM_003493.2	51	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	398	756	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ATR	545	MSKCC	GRCh37	3	142188370	142188370	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	84	361	0	ENST00000350721.4:c.6361A>G	p.Lys2121Glu	p.K2121E	ENST00000350721	NM_001184.3	2121	Aaa/Gaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	192	281	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250826	26250826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	19	245	1	ENST00000446824.2:c.8G>A	p.Arg3His	p.R3H	ENST00000446824	NM_021018.2	3	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	53	474	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028675	12028675	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	35	302	0	ENST00000353533.5:c.878T>C	p.Leu293Ser	p.L293S	ENST00000353533	NM_003010.3	293	tTg/tCg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965503	18965503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	45	461	0	ENST00000262803.5:c.1250C>T	p.Ser417Leu	p.S417L	ENST00000262803	NM_002911.3	417	tCg/tTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	36	248	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170156	32170156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	54	648	0	ENST00000375023.3:c.3452G>C	p.Gly1151Ala	p.G1151A	ENST00000375023	NM_004557.3	1151	gGc/gCc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1977024	1977024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	50	500	0	ENST00000382891.5:c.3518C>T	p.Thr1173Met	p.T1173M	ENST00000382891	NM_133335.3	1173	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577581	7577582	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	339	482	0	ENST00000269305.4:c.699dup	p.Tyr234LeufsTer6	p.Y234Lfs*6	ENST00000269305	NM_001126112.2	233	-/C																																																																														
NF2	4771	MSKCC	GRCh37	22	30051482	30051655	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTTTACTGTTTTGTAAAAATGATGCATAATTATAAAAGTGGCAAACAATACCAAATTTACTTCATGTGTAGGTTTTTTATTTTGCTCTATTTTTTGGTAGGTAATAAATCTGTATCAGATGACTCCGGAAATGTGGGAGGAGAGAATTACTGCTTGGTACGCAGAGCACCGAG	GCTTTACTGTTTTGTAAAAATGATGCATAATTATAAAAGTGGCAAACAATACCAAATTTACTTCATGTGTAGGTTTTTTATTTTGCTCTATTTTTTGGTAGGTAATAAATCTGTATCAGATGACTCCGGAAATGTGGGAGGAGAGAATTACTGCTTGGTACGCAGAGCACCGAG	-			P-0049686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	21	60	0	ENST00000338641.4:c.517-99_591del		p.X173_splice	ENST00000338641	NM_000268.3	173																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247363	153247363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	72	220	0	ENST00000281708.4:c.1439A>G	p.Asp480Gly	p.D480G	ENST00000281708	NM_033632.3	480	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	272	440	0	ENST00000269305.4:c.583dupA	p.Ile195AsnfsTer14	p.I195Nfs*14	ENST00000269305	NM_001126112.2	195	atc/aAtc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261571	16261571	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	298	367	0	ENST00000375759.3:c.8836C>G	p.Gln2946Glu	p.Q2946E	ENST00000375759	NM_015001.2	2946	Cag/Gag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362034	118362034	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	12	181	0	ENST00000534358.1:c.4819+1G>A		p.X1607_splice	ENST00000534358	NM_005933.3	1607																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514009	125514009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	52	248	0	ENST00000428830.2:c.947G>A	p.Ser316Asn	p.S316N	ENST00000428830	NM_001114121.2	316	aGt/aAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0028838-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			694	206	584	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0028838-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			617	78	437	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720741	89720741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028838-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			133	18	168	0	ENST00000371953.3:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000371953	NM_000314.4	298	Caa/Taa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857494	9857494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028838-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			781	42	428	0	ENST00000330684.3:c.3907G>C	p.Asp1303His	p.D1303H	ENST00000330684	NM_001134407.1	1303	Gac/Cac																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713901	30713901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028838-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			635	118	505	0	ENST00000359013.4:c.1301C>T	p.Ser434Phe	p.S434F	ENST00000359013	NM_001024847.2	434	tCt/tTt																																																																														
TEK	7010	MSKCC	GRCh37	9	27197580	27197580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028838-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			531	244	412	0	ENST00000380036.4:c.1892C>T	p.Ala631Val	p.A631V	ENST00000380036	NM_000459.3	631	gCt/gTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008036	29008036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			323	36	356	0	ENST00000282397.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000282397	NM_002019.4	245	Ggc/Agc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499345	89499345	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			455	84	493	0	ENST00000336596.2:c.2515G>T	p.Glu839Ter	p.E839*	ENST00000336596	NM_005233.5	839	Gag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			505	252	593	2	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945066	31945066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			921	157	673	0	ENST00000340398.3:c.35C>A	p.Thr12Asn	p.T12N	ENST00000340398	NM_001013699.2	12	aCc/aAc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245300	41245300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			582	198	601	0	ENST00000357654.3:c.2248C>A	p.Leu750Ile	p.L750I	ENST00000357654	NM_007294.3	750	Ctc/Atc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			232	217	268	0	ENST00000304494.5:c.58G>T	p.Ala20Ser	p.A20S	ENST00000304494	NM_000077.4	20	Gcg/Tcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			232	217	268	0	ENST00000304494.5:c.58G>T	p.Ala20Ser	p.A20S	ENST00000304494	NM_000077.4	20	Gcg/Tcg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515100	31515100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	64	539	0	ENST00000344624.3:c.1285C>G	p.Gln429Glu	p.Q429E	ENST00000344624		429	Cag/Gag																																																																														
KDR	3791	MSKCC	GRCh37	4	55987320	55987320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			384	53	448	0	ENST00000263923.4:c.105C>A	p.Ser35Arg	p.S35R	ENST00000263923	NM_002253.2	35	agC/agA																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98218695	98218696	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			274	150	420	0	ENST00000331920.6:c.3169-1_3169delinsTT		p.X1057_splice	ENST00000331920	NM_000264.3	1057																																																																															
ATM	472	MSKCC	GRCh37	11	108199749	108199749	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			184	32	266	0	ENST00000278616.4:c.7091C>T	p.Ala2364Val	p.A2364V	ENST00000278616	NM_000051.3	2364	gCa/gTa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741683	17741683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			421	550	413	0	ENST00000250003.3:c.354G>T	p.Glu118Asp	p.E118D	ENST00000250003	NM_002478.4	118	gaG/gaT																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117753474	117753474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			561	50	617	2	ENST00000369458.3:c.4G>T	p.Ala2Ser	p.A2S	ENST00000369458	NM_024626.3	2	Gct/Tct																																																																														
PARP1	142	MSKCC	GRCh37	1	226567636	226567636	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			474	297	672	0	ENST00000366794.5:c.1530G>T	p.Gln510His	p.Q510H	ENST00000366794	NM_001618.3	510	caG/caT																																																																														
PGR	5241	MSKCC	GRCh37	11	100999332	100999332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			690	235	989	0	ENST00000325455.5:c.470C>A	p.Thr157Asn	p.T157N	ENST00000325455	NM_001202474.3	157	aCc/aAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658360	18658360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			409	58	403	0	ENST00000266497.5:c.3165C>G	p.Phe1055Leu	p.F1055L	ENST00000266497		1055	ttC/ttG																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988558	36988558	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1481	176	692	0	ENST00000354822.5:c.95C>A	p.Ser32Ter	p.S32*	ENST00000354822	NM_001079668.2	32	tCg/tAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95577713	95577713	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			356	67	402	0	ENST00000343455.3:c.2197G>C	p.Glu733Gln	p.E733Q	ENST00000343455	NM_177438.2	733	Gag/Cag																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14028139	14028139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			175	113	462	0	ENST00000311895.7:c.1193G>C	p.Ser398Thr	p.S398T	ENST00000311895	NM_005236.2	398	aGt/aCt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100905	41100905	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			653	117	612	0	ENST00000373198.4:c.1450+1G>T		p.X484_splice	ENST00000373198	NM_133170.3	484																																																																															
TP63	8626	MSKCC	GRCh37	3	189590707	189590707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			582	145	552	0	ENST00000264731.3:c.1272G>C	p.Met424Ile	p.M424I	ENST00000264731	NM_003722.4	424	atG/atC																																																																														
KIT	3815	MSKCC	GRCh37	4	55561765	55561765	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			468	88	422	0	ENST00000288135.5:c.155A>T	p.Asp52Val	p.D52V	ENST00000288135	NM_000222.2	52	gAc/gTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55972024	55972024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			446	204	493	0	ENST00000263923.4:c.1620G>T	p.Glu540Asp	p.E540D	ENST00000263923	NM_002253.2	540	gaG/gaT																																																																														
PRDM1	639	MSKCC	GRCh37	6	106543541	106543541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			198	69	323	0	ENST00000369096.4:c.343C>G	p.Pro115Ala	p.P115A	ENST00000369096	NM_001198.3	115	Ccc/Gcc																																																																														
CDK6	1021	MSKCC	GRCh37	7	92462502	92462502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			862	99	678	1	ENST00000265734.4:c.136C>T	p.Arg46Trp	p.R46W	ENST00000265734	NM_001259.6	46	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974763	21974768	+	inframe_deletion	In_Frame_Del	DEL	GGGCCG	GGGCCG	-			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			249	233	308	0	ENST00000304494.5:c.59_64del	p.Ala20_Arg22delinsGly	p.A20_R22delinsG	ENST00000304494	NM_000077.4	20	gCGGCCCgg/ggg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128434776	128434776	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			628	120	614	0	ENST00000265960.3:c.78G>C	p.Met26Ile	p.M26I	ENST00000265960	NM_001006617.1	26	atG/atC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974763	21974763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			453	29	308	0	ENST00000304494.5:c.64C>T	p.Arg22Trp	p.R22W	ENST00000304494	NM_000077.4	22	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577536	+	frameshift_variant	Frame_Shift_Del	DEL	CCT	CCT	TC			P-0048875-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			475	300	654	2	ENST00000269305.4:c.745_747delinsGA	p.Arg249AspfsTer96	p.R249Dfs*96	ENST00000269305	NM_001126112.2	249	AGG/GA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	174	360	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	317	798	0	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108200976	108200976	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	206	352	0	ENST00000278616.4:c.7343A>T	p.Asp2448Val	p.D2448V	ENST00000278616	NM_000051.3	2448	gAt/gTt																																																																														
CCNE1	898	MSKCC	GRCh37	19	30314622	30314622	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	282	544	0	ENST00000262643.3:c.1171A>T	p.Ser391Cys	p.S391C	ENST00000262643	NM_001238.2	391	Agt/Tgt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793446	242793446	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	182	488	0	ENST00000334409.5:c.631G>T	p.Glu211Ter	p.E211*	ENST00000334409	NM_005018.2	211	Gag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141111	55141111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	163	401	0	ENST00000257290.5:c.1757G>C	p.Trp586Ser	p.W586S	ENST00000257290	NM_006206.4	586	tGg/tCg																																																																														
HGF	3082	MSKCC	GRCh37	7	81392026	81392026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	44	260	0	ENST00000222390.5:c.251G>T	p.Cys84Phe	p.C84F	ENST00000222390	NM_000601.4	84	tGc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0049140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	460	524	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246490592	246490592	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	125	408	0	ENST00000388985.4:c.442G>C	p.Val148Leu	p.V148L	ENST00000388985		148	Gta/Cta																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31466312	31466312	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0049140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	463	479	0	ENST00000344624.3:c.2443A>T	p.Lys815Ter	p.K815*	ENST00000344624		815	Aaa/Taa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545641	106545641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	121	391	0	ENST00000359195.3:c.3118C>T	p.Pro1040Ser	p.P1040S	ENST00000359195	NM_002649.2	1040	Ccc/Tcc																																																																														
MET	4233	MSKCC	GRCh37	7	116423398	116423398	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049140-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	23	254	0	ENST00000397752.3:c.3673C>G	p.Leu1225Val	p.L1225V	ENST00000397752	NM_000245.2	1225	Ctt/Gtt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075676	8075676	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	26	301	0	ENST00000377482.5:c.4T>C	p.Ser2Pro	p.S2P	ENST00000377482	NM_018948.3	2	Tca/Cca																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9776497	9776497	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	127	571	0	ENST00000377346.4:c.601-1G>A		p.X201_splice	ENST00000377346	NM_005026.3	201																																																																															
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	16	449	0	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																																																														
CDC42	998	MSKCC	GRCh37	1	22417932	22417932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	20	148	0	ENST00000344548.3:c.498G>T	p.Lys166Asn	p.K166N	ENST00000344548	NM_001039802.1	166	aaG/aaT																																																																														
ID3	3399	MSKCC	GRCh37	1	23885723	23885723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	140	627	0	ENST00000374561.5:c.195C>A	p.Ser65Arg	p.S65R	ENST00000374561	NM_002167.4	65	agC/agA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106482	27106482	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	183	509	0	ENST00000324856.7:c.6093T>G	p.Tyr2031Ter	p.Y2031*	ENST00000324856	NM_006015.4	2031	taT/taG																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39321465	39321465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	35	407	0	ENST00000373001.3:c.556G>T	p.Asp186Tyr	p.D186Y	ENST00000373001	NM_022157.3	186	Gat/Tat																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45796887	45796887	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	171	571	0	ENST00000372115.3:c.1401T>G	p.Phe467Leu	p.F467L	ENST00000372115	NM_001048171.1	467	ttT/ttG																																																																														
JAK1	3716	MSKCC	GRCh37	1	65301084	65301084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	44	200	0	ENST00000342505.4:c.3364G>T	p.Asp1122Tyr	p.D1122Y	ENST00000342505	NM_002227.2	1122	Gat/Tat																																																																														
MCL1	4170	MSKCC	GRCh37	1	150550850	150550850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	143	319	0	ENST00000369026.2:c.806C>A	p.Ser269Tyr	p.S269Y	ENST00000369026	NM_021960.4	269	tCt/tAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162743290	162743290	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	41	247	0	ENST00000367921.3:c.1760A>C	p.Lys587Thr	p.K587T	ENST00000367921	NM_006182.2	587	aAa/aCa																																																																														
NUF2	83540	MSKCC	GRCh37	1	163306627	163306627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	135	249	0	ENST00000271452.3:c.424C>A	p.Leu142Ile	p.L142I	ENST00000271452	NM_145697.2	142	Ctt/Att																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111132	193111132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	72	311	0	ENST00000367435.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000367435	NM_024529.4	222	cGa/cAa																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206665005	206665005	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	81	409	0	ENST00000367120.3:c.1758A>C	p.Lys586Asn	p.K586N	ENST00000367120	NM_014002.3	586	aaA/aaC																																																																														
PARP1	142	MSKCC	GRCh37	1	226589979	226589979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	109	525	0	ENST00000366794.5:c.222C>A	p.Phe74Leu	p.F74L	ENST00000366794	NM_001618.3	74	ttC/ttA																																																																														
AKT3	10000	MSKCC	GRCh37	1	243828104	243828104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	114	293	0	ENST00000263826.5:c.254G>T	p.Arg85Ile	p.R85I	ENST00000263826	NM_005465.4	85	aGa/aTa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115837	8115837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200935603		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	43	501	0	ENST00000346208.3:c.1183G>A	p.Ala395Thr	p.A395T	ENST00000346208		395	Gcc/Acc																																																																														
TET1	80312	MSKCC	GRCh37	10	70333990	70333990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	58	238	0	ENST00000373644.4:c.1895C>A	p.Ser632Tyr	p.S632Y	ENST00000373644	NM_030625.2	632	tCt/tAt																																																																														
ATM	472	MSKCC	GRCh37	11	108106400	108106400	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	47	141	0	ENST00000278616.4:c.335C>A	p.Ala112Glu	p.A112E	ENST00000278616	NM_000051.3	112	gCa/gAa																																																																														
ATM	472	MSKCC	GRCh37	11	108181037	108181037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	54	243	0	ENST00000278616.4:c.5913G>T	p.Glu1971Asp	p.E1971D	ENST00000278616	NM_000051.3	1971	gaG/gaT																																																																														
ATM	472	MSKCC	GRCh37	11	108201008	108201008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	87	353	0	ENST00000278616.4:c.7375C>T	p.Arg2459Cys	p.R2459C	ENST00000278616	NM_000051.3	2459	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108203492	108203492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138941496		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	21	193	0	ENST00000278616.4:c.7792C>T	p.Arg2598Ter	p.R2598*	ENST00000278616	NM_000051.3	2598	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374685	118374685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	69	261	0	ENST00000534358.1:c.8078C>A	p.Ser2693Tyr	p.S2693Y	ENST00000534358	NM_005933.3	2693	tCt/tAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552721	18552721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	152	487	0	ENST00000266497.5:c.2132C>T	p.Thr711Ile	p.T711I	ENST00000266497		711	aCc/aTc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644588	21644588	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	81	376	1	ENST00000421138.2:c.79G>T	p.Glu27Ter	p.E27*	ENST00000421138		27	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	63	299	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125024	46125024	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	57	183	0	ENST00000334344.6:c.211G>T	p.Glu71Ter	p.E71*	ENST00000334344	NM_152641.2	71	Gaa/Taa																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50490648	50490648	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	44	402	2	ENST00000394963.4:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000394963	NM_003076.4	429	Gaa/Taa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481696	56481696	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	231	614	0	ENST00000267101.3:c.731T>G	p.Phe244Cys	p.F244C	ENST00000267101	NM_001982.3	244	tTt/tGt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56491010	56491010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	103	495	0	ENST00000267101.3:c.2456C>T	p.Ala819Val	p.A819V	ENST00000267101	NM_001982.3	819	gCc/gTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133249857	133249857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	145	392	0	ENST00000320574.5:c.1366G>C	p.Ala456Pro	p.A456P	ENST00000320574	NM_006231.2	456	Gcc/Ccc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	59	285	0	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953980	32953980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	83	289	0	ENST00000380152.3:c.9047C>A	p.Ser3016Tyr	p.S3016Y	ENST00000380152		3016	tCt/tAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48941730	48941730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	73	196	0	ENST00000267163.4:c.1040C>A	p.Ser347Tyr	p.S347Y	ENST00000267163	NM_000321.2	347	tCt/tAt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504590	103504590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	83	221	0	ENST00000355739.4:c.211C>T	p.Arg71Cys	p.R71C	ENST00000355739	NM_000123.3	71	Cgt/Tgt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103520572	103520572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	47	219	0	ENST00000355739.4:c.2643C>A	p.Phe881Leu	p.F881L	ENST00000355739	NM_000123.3	881	ttC/ttA																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436784	110436784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	129	679	1	ENST00000375856.3:c.1617C>A	p.Phe539Leu	p.F539L	ENST00000375856	NM_003749.2	539	ttC/ttA																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066879	30066879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	130	419	1	ENST00000331968.5:c.2252C>T	p.Ala751Val	p.A751V	ENST00000331968	NM_002742.2	751	gCt/gTt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093456	30093456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	62	238	0	ENST00000331968.5:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000331968	NM_002742.2	603	Cgt/Tgt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107713	30107713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	81	410	0	ENST00000331968.5:c.967G>A	p.Glu323Lys	p.E323K	ENST00000331968	NM_002742.2	323	Gaa/Aaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609467	81609467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	81	347	0	ENST00000298171.2:c.1065C>A	p.Phe355Leu	p.F355L	ENST00000298171	NM_000369.2	355	ttC/ttA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570126	95570126	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	119	345	0	ENST00000343455.3:c.3607A>C	p.Asn1203His	p.N1203H	ENST00000343455	NM_177438.2	1203	Aat/Cat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570342	95570342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	116	260	0	ENST00000343455.3:c.3391A>G	p.Asn1131Asp	p.N1131D	ENST00000343455	NM_177438.2	1131	Aat/Gat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574292	95574292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144649926		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	44	250	0	ENST00000343455.3:c.2575C>T	p.Arg859Trp	p.R859W	ENST00000343455	NM_177438.2	859	Cgg/Tgg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749343	43749343	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	171	423	0	ENST00000382044.4:c.1463C>A	p.Ser488Ter	p.S488*	ENST00000382044	NM_001141980.1	488	tCa/tAa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43766897	43766897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	54	248	0	ENST00000382044.4:c.1154G>A	p.Ser385Asn	p.S385N	ENST00000382044	NM_001141980.1	385	aGt/aAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43766924	43766924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	21	244	0	ENST00000382044.4:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000382044	NM_001141980.1	376	cGa/cAa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43769790	43769790	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	83	372	0	ENST00000382044.4:c.955+1G>A		p.X319_splice	ENST00000382044	NM_001141980.1	319																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66735647	66735647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	78	307	1	ENST00000307102.5:c.468G>T	p.Lys156Asn	p.K156N	ENST00000307102	NM_002755.3	156	aaG/aaT																																																																														
BLM	641	MSKCC	GRCh37	15	91312398	91312398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	122	362	1	ENST00000355112.3:c.2343G>T	p.Glu781Asp	p.E781D	ENST00000355112	NM_000057.2	781	gaG/gaT																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640538	3640538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150453226		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	98	697	2	ENST00000294008.3:c.3101G>A	p.Arg1034His	p.R1034H	ENST00000294008	NM_032444.2	1034	cGc/cAc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041527	14041527	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	104	352	1	ENST00000311895.7:c.2074C>T	p.Arg692Ter	p.R692*	ENST00000311895	NM_005236.2	692	Cga/Tga																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041854	14041854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	95	331	1	ENST00000311895.7:c.2401C>A	p.Leu801Ile	p.L801I	ENST00000311895	NM_005236.2	801	Ctc/Atc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783688	50783688	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	128	384	1	ENST00000398568.2:c.79G>T	p.Glu27Ter	p.E27*	ENST00000398568	NM_001042412.1	27	Gaa/Taa																																																																														
CDH1	999	MSKCC	GRCh37	16	68857517	68857517	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	142	379	0	ENST00000261769.5:c.2152C>A	p.Leu718Ile	p.L718I	ENST00000261769	NM_004360.3	718	Ctt/Att																																																																														
CDH1	999	MSKCC	GRCh37	16	68867274	68867274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	86	454	2	ENST00000261769.5:c.2521G>A	p.Glu841Lys	p.E841K	ENST00000261769	NM_004360.3	841	Gaa/Aaa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81892729	81892729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	101	265	0	ENST00000359376.3:c.440G>T	p.Arg147Ile	p.R147I	ENST00000359376	NM_002661.3	147	aGa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	72	523	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16040679	16040679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	93	318	0	ENST00000268712.3:c.1455G>T	p.Glu485Asp	p.E485D	ENST00000268712	NM_006311.3	485	gaG/gaT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16089913	16089913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	122	319	0	ENST00000268712.3:c.197G>A	p.Arg66Gln	p.R66Q	ENST00000268712	NM_006311.3	66	cGa/cAa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17117090	17117090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	187	494	1	ENST00000285071.4:c.1619G>A	p.Gly540Asp	p.G540D	ENST00000285071	NM_144997.5	540	gGt/gAt																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30302704	30302704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	46	321	0	ENST00000322652.5:c.795G>T	p.Met265Ile	p.M265I	ENST00000322652	NM_015355.2	265	atG/atT																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627887	37627887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	136	450	0	ENST00000447079.4:c.1802C>A	p.Ser601Tyr	p.S601Y	ENST00000447079	NM_015083.1	601	tCt/tAt																																																																														
EZH1	2145	MSKCC	GRCh37	17	40870068	40870068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	110	286	0	ENST00000428826.2:c.949A>C	p.Asn317His	p.N317H	ENST00000428826		317	Aat/Cat																																																																														
BRCA1	672	MSKCC	GRCh37	17	41209086	41209086	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	83	487	1	ENST00000357654.3:c.5260G>T	p.Glu1754Ter	p.E1754*	ENST00000357654	NM_007294.3	1754	Gaa/Taa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245080	41245080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	142	496	0	ENST00000357654.3:c.2468G>T	p.Arg823Ile	p.R823I	ENST00000357654	NM_007294.3	823	aGa/aTa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59886057	59886057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	95	387	0	ENST00000259008.2:c.689C>T	p.Ser230Leu	p.S230L	ENST00000259008	NM_032043.2	230	tCg/tTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212433	5212433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	127	634	1	ENST00000357368.4:c.4684G>A	p.Glu1562Lys	p.E1562K	ENST00000357368	NM_002850.3	1562	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7267855	7267855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	142	410	0	ENST00000302850.5:c.153G>T	p.Glu51Asp	p.E51D	ENST00000302850	NM_000208.2	51	gaG/gaT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271691	15271691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	64	814	1	ENST00000263388.2:c.6748G>A	p.Glu2250Lys	p.E2250K	ENST00000263388	NM_000435.2	2250	Gaa/Aaa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955169	17955169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	230	659	0	ENST00000458235.1:c.58T>C	p.Ser20Pro	p.S20P	ENST00000458235	NM_000215.3	20	Tcc/Ccc																																																																														
AXL	558	MSKCC	GRCh37	19	41763500	41763500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	113	453	0	ENST00000301178.4:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000301178	NM_021913.4	767	Cgc/Tgc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976426	25976426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	87	348	0	ENST00000435504.4:c.1119C>A	p.Phe373Leu	p.F373L	ENST00000435504		373	ttC/ttA																																																																														
ALK	238	MSKCC	GRCh37	2	30143162	30143162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	169	711	0	ENST00000389048.3:c.364A>G	p.Thr122Ala	p.T122A	ENST00000389048	NM_004304.4	122	Acg/Gcg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47635547	47635547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	77	222	1	ENST00000233146.2:c.219G>T	p.Lys73Asn	p.K73N	ENST00000233146	NM_000251.2	73	aaG/aaT																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027593	48027593	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	69	220	0	ENST00000234420.5:c.2471A>C	p.Lys824Thr	p.K824T	ENST00000234420	NM_000179.2	824	aAa/aCa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033767	48033767	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141464646		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	18	225	0	ENST00000234420.5:c.3978G>A	p.Met1326Ile	p.M1326I	ENST00000234420	NM_000179.2	1326	atG/atA																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	19	335	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99193519	99193519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	235	639	0	ENST00000074304.5:c.2714C>T	p.Ser905Leu	p.S905L	ENST00000074304	NM_001134224.1	905	tCg/tTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	84	333	0	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131398	202131398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	81	370	0	ENST00000358485.4:c.366G>T	p.Lys122Asn	p.K122N	ENST00000358485	NM_001080125.1	122	aaG/aaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495199	212495199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	99	322	0	ENST00000342788.4:c.2067C>A	p.Phe689Leu	p.F689L	ENST00000342788	NM_005235.2	689	ttC/ttA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812335	212812335	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	38	207	0	ENST00000342788.4:c.241C>T	p.Arg81Ter	p.R81*	ENST00000342788	NM_005235.2	81	Cga/Tga																																																																														
INHA	3623	MSKCC	GRCh37	2	220439839	220439839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	55	745	2	ENST00000243786.2:c.692G>A	p.Arg231Gln	p.R231Q	ENST00000243786	NM_002191.3	231	cGa/cAa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661596	227661596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	145	682	0	ENST00000305123.5:c.1859C>T	p.Ala620Val	p.A620V	ENST00000305123	NM_005544.2	620	gCc/gTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546937	9546937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	39	443	0	ENST00000353224.5:c.1085G>T	p.Ser362Ile	p.S362I	ENST00000353224	NM_177990.2	362	aGc/aTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	113	337	0	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																																																														
SRC	6714	MSKCC	GRCh37	20	36028609	36028609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	114	588	2	ENST00000358208.4:c.951G>T	p.Met317Ile	p.M317I	ENST00000358208		317	atG/atT																																																																														
TOP1	7150	MSKCC	GRCh37	20	39725963	39725963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	47	217	0	ENST00000361337.2:c.834C>A	p.Phe278Leu	p.F278L	ENST00000361337	NM_003286.2	278	ttC/ttA																																																																														
TOP1	7150	MSKCC	GRCh37	20	39728716	39728716	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	19	235	0	ENST00000361337.2:c.996A>C	p.Glu332Asp	p.E332D	ENST00000361337	NM_003286.2	332	gaA/gaC																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747091	40747091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	99	519	1	ENST00000373198.4:c.2991G>T	p.Glu997Asp	p.E997D	ENST00000373198	NM_133170.3	997	gaG/gaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757468	40757468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	38	507	0	ENST00000373198.4:c.2830G>A	p.Asp944Asn	p.D944N	ENST00000373198	NM_133170.3	944	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770576	40770576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	111	391	1	ENST00000373198.4:c.2806C>T	p.Arg936Ter	p.R936*	ENST00000373198	NM_133170.3	936	Cga/Tga																																																																														
AURKA	6790	MSKCC	GRCh37	20	54948603	54948603	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	53	282	0	ENST00000312783.6:c.715G>T	p.Glu239Ter	p.E239*	ENST00000312783	NM_198436.1	239	Gaa/Taa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44514895	44514895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	131	281	0	ENST00000291552.4:c.352C>T	p.Arg118Cys	p.R118C	ENST00000291552	NM_006758.2	118	Cgc/Tgc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22153317	22153317	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	115	379	0	ENST00000215832.6:c.593T>G	p.Ile198Ser	p.I198S	ENST00000215832	NM_002745.4	198	aTt/aGt																																																																														
NF2	4771	MSKCC	GRCh37	22	30050676	30050676	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150667239		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	81	342	0	ENST00000338641.4:c.478C>T	p.Arg160Trp	p.R160W	ENST00000338641	NM_000268.3	160	Cgg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41533773	41533773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	143	369	1	ENST00000263253.7:c.1739G>A	p.Arg580Gln	p.R580Q	ENST00000263253	NM_001429.3	580	cGa/cAa																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421225	12421225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	114	411	0	ENST00000287820.6:c.105G>T	p.Glu35Asp	p.E35D	ENST00000287820	NM_015869.4	35	gaG/gaT																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275240	41275240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	68	360	0	ENST00000349496.5:c.1406G>A	p.Arg469His	p.R469H	ENST00000349496	NM_001904.3	469	cGt/cAt																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799675	72799675	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	164	482	0	ENST00000325599.8:c.1494A>C	p.Glu498Asp	p.E498D	ENST00000325599	NM_018130.2	498	gaA/gaC																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390072	89390072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	65	221	0	ENST00000336596.2:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000336596	NM_005233.5	274	cGa/cAa																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119721084	119721084	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	40	330	0	ENST00000316626.5:c.91G>A	p.Asp31Asn	p.D31N	ENST00000316626		31	Gac/Aac																																																																														
ATR	545	MSKCC	GRCh37	3	142177859	142177859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	65	294	0	ENST00000350721.4:c.7444C>A	p.Leu2482Ile	p.L2482I	ENST00000350721	NM_001184.3	2482	Ctc/Atc																																																																														
ATR	545	MSKCC	GRCh37	3	142180899	142180899	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	77	300	1	ENST00000350721.4:c.7075G>T	p.Glu2359Ter	p.E2359*	ENST00000350721	NM_001184.3	2359	Gaa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142268410	142268410	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	106	316	0	ENST00000350721.4:c.3082A>C	p.Ile1028Leu	p.I1028L	ENST00000350721	NM_001184.3	1028	Att/Ctt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	67	453	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178942585	178942585	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	82	248	0	ENST00000263967.3:c.2392G>T	p.Glu798Ter	p.E798*	ENST00000263967	NM_006218.2	798	Gag/Tag																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155297	185155297	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	65	343	0	ENST00000265026.3:c.538G>T	p.Gly180Ter	p.G180*	ENST00000265026	NM_004721.4	180	Gga/Tga																																																																														
BCL6	604	MSKCC	GRCh37	3	187447327	187447327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	153	483	0	ENST00000232014.4:c.866G>A	p.Arg289Gln	p.R289Q	ENST00000232014	NM_001130845.1	289	cGa/cAa																																																																														
BCL6	604	MSKCC	GRCh37	3	187447384	187447384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780987785		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	110	517	1	ENST00000232014.4:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000232014	NM_001130845.1	270	cGa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189587113	189587113	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148052765		P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	87	259	0	ENST00000264731.3:c.1130C>T	p.Pro377Leu	p.P377L	ENST00000264731	NM_003722.4	377	cCg/cTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55976666	55976666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	70	476	0	ENST00000263923.4:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000263923	NM_002253.2	387	Gaa/Aaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213879	66213879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	32	352	1	ENST00000273854.3:c.2551G>A	p.Ala851Thr	p.A851T	ENST00000273854	NM_004439.5	851	Gct/Act																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280017	66280017	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	49	161	0	ENST00000273854.3:c.1672G>T	p.Glu558Ter	p.E558*	ENST00000273854	NM_004439.5	558	Gaa/Taa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286238	66286238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	71	313	0	ENST00000273854.3:c.1448A>G	p.Asn483Ser	p.N483S	ENST00000273854	NM_004439.5	483	aAc/aGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249503	153249503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	72	407	0	ENST00000281708.4:c.1275G>A	p.Trp425Ter	p.W425*	ENST00000281708	NM_033632.3	425	tgG/tgA																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253835	153253835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	51	268	0	ENST00000281708.4:c.898G>T	p.Asp300Tyr	p.D300Y	ENST00000281708	NM_033632.3	300	Gac/Tac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332708	153332708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	32	307	0	ENST00000281708.4:c.248G>T	p.Arg83Ile	p.R83I	ENST00000281708	NM_033632.3	83	aGa/aTa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31423030	31423030	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	105	381	1	ENST00000344624.3:c.3283C>T	p.Arg1095Ter	p.R1095*	ENST00000344624		1095	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871249	35871249	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	112	256	0	ENST00000303115.3:c.471G>T	p.Lys157Asn	p.K157N	ENST00000303115	NM_002185.3	157	aaG/aaT																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950420	38950420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	78	324	0	ENST00000357387.3:c.3530G>A	p.Ser1177Asn	p.S1177N	ENST00000357387	NM_152756.3	1177	aGc/aAc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752845	57752845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	61	314	0	ENST00000274289.3:c.1083G>T	p.Lys361Asn	p.K361N	ENST00000274289	NM_006622.3	361	aaG/aaT																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522657	67522657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	21	263	0	ENST00000274335.5:c.154G>T	p.Glu52Ter	p.E52*	ENST00000274335		52	Gaa/Taa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79965931	79965931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	101	343	0	ENST00000265081.6:c.595G>T	p.Asp199Tyr	p.D199Y	ENST00000265081	NM_002439.4	199	Gat/Tat																																																																														
MSH3	4437	MSKCC	GRCh37	5	80040402	80040402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	135	337	2	ENST00000265081.6:c.1731G>T	p.Lys577Asn	p.K577N	ENST00000265081	NM_002439.4	577	aaG/aaT																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685313	86685313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	48	185	0	ENST00000274376.6:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000274376	NM_002890.2	1010	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112174149	112174149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	44	254	0	ENST00000257430.4:c.2858A>C	p.Lys953Thr	p.K953T	ENST00000257430	NM_000038.5	953	aAa/aCa																																																																														
APC	324	MSKCC	GRCh37	5	112174793	112174793	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	74	192	0	ENST00000257430.4:c.3502G>T	p.Glu1168Ter	p.E1168*	ENST00000257430	NM_000038.5	1168	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175457	112175457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	68	273	0	ENST00000257430.4:c.4166C>A	p.Ser1389Tyr	p.S1389Y	ENST00000257430	NM_000038.5	1389	tCt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	46	161	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112176234	112176234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	78	332	0	ENST00000257430.4:c.4943C>A	p.Pro1648His	p.P1648H	ENST00000257430	NM_000038.5	1648	cCt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112177170	112177170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	63	254	0	ENST00000257430.4:c.5879C>T	p.Pro1960Leu	p.P1960L	ENST00000257430	NM_000038.5	1960	cCg/cTg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441098	149441098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	178	497	0	ENST00000286301.3:c.1814G>T	p.Gly605Val	p.G605V	ENST00000286301	NM_005211.3	605	gGc/gTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637721	176637721	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	145	425	0	ENST00000439151.2:c.2321A>C	p.Asn774Thr	p.N774T	ENST00000439151	NM_022455.4	774	aAt/aCt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638456	176638456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	157	512	0	ENST00000439151.2:c.3056G>A	p.Arg1019His	p.R1019H	ENST00000439151	NM_022455.4	1019	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176662922	176662922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	75	233	2	ENST00000439151.2:c.3897G>T	p.Lys1299Asn	p.K1299N	ENST00000439151	NM_022455.4	1299	aaG/aaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665349	176665349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	131	333	0	ENST00000439151.2:c.4033C>A	p.Leu1345Ile	p.L1345I	ENST00000439151	NM_022455.4	1345	Ctt/Att																																																																														
FLT4	2324	MSKCC	GRCh37	5	180041073	180041073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	182	681	0	ENST00000261937.6:c.3326C>A	p.Ser1109Tyr	p.S1109Y	ENST00000261937	NM_182925.4	1109	tCt/tAt																																																																														
IRF4	3662	MSKCC	GRCh37	6	393155	393155	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	81	386	0	ENST00000380956.4:c.3G>T	p.Met1?	p.M1?	ENST00000380956	NM_001195286.1	1	atG/atT																																																																														
IRF4	3662	MSKCC	GRCh37	6	407458	407458	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	69	192	0	ENST00000380956.4:c.1216G>T	p.Glu406Ter	p.E406*	ENST00000380956	NM_001195286.1	406	Gaa/Taa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675856	30675856	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	185	505	2	ENST00000376406.3:c.2500G>T	p.Glu834Ter	p.E834*	ENST00000376406	NM_014641.2	834	Gaa/Taa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32814855	32814855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	94	532	1	ENST00000354258.4:c.2210G>A	p.Ser737Asn	p.S737N	ENST00000354258	NM_000593.5	737	aGc/aAc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816451	32816451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	115	531	1	ENST00000354258.4:c.1724G>A	p.Arg575His	p.R575H	ENST00000354258	NM_000593.5	575	cGc/cAc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288234	33288234	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	43	482	0	ENST00000374542.5:c.1174A>C	p.Lys392Gln	p.K392Q	ENST00000374542	NM_001141970.1	392	Aaa/Caa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120612	94120612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	62	322	0	ENST00000369303.4:c.439G>T	p.Asp147Tyr	p.D147Y	ENST00000369303	NM_004440.3	147	Gac/Tac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622241	117622241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	28	355	0	ENST00000368508.3:c.6629G>T	p.Arg2210Ile	p.R2210I	ENST00000368508	NM_002944.2	2210	aGa/aTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677962	117677962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	72	355	0	ENST00000368508.3:c.3971G>T	p.Arg1324Met	p.R1324M	ENST00000368508	NM_002944.2	1324	aGg/aTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678991	117678991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	96	301	0	ENST00000368508.3:c.3830C>A	p.Ser1277Tyr	p.S1277Y	ENST00000368508	NM_002944.2	1277	tCt/tAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117714464	117714464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	76	256	1	ENST00000368508.3:c.1185G>T	p.Glu395Asp	p.E395D	ENST00000368508	NM_002944.2	395	gaG/gaT																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202424	138202424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	186	560	0	ENST00000237289.4:c.2341G>A	p.Glu781Lys	p.E781K	ENST00000237289	NM_001270507.1	781	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984024	2984024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	41	512	0	ENST00000396946.4:c.506C>T	p.Thr169Met	p.T169M	ENST00000396946	NM_032415.4	169	aCg/aTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509697	106509697	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	133	458	0	ENST00000359195.3:c.1691T>G	p.Leu564Arg	p.L564R	ENST00000359195	NM_002649.2	564	cTt/cGt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526619	106526619	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	84	324	0	ENST00000359195.3:c.2912A>C	p.Asn971Thr	p.N971T	ENST00000359195	NM_002649.2	971	aAt/aCt																																																																														
SMO	6608	MSKCC	GRCh37	7	128846366	128846366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	99	550	3	ENST00000249373.3:c.1202C>T	p.Ala401Val	p.A401V	ENST00000249373	NM_005631.4	401	gCg/gTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128846374	128846374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	115	542	0	ENST00000249373.3:c.1210G>A	p.Val404Met	p.V404M	ENST00000249373	NM_005631.4	404	Gtg/Atg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523717	148523717	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	83	215	0	ENST00000320356.2:c.736G>T	p.Glu246Ter	p.E246*	ENST00000320356	NM_004456.4	246	Gaa/Taa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148529736	148529736	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	46	204	0	ENST00000320356.2:c.353A>T	p.Gln118Leu	p.Q118L	ENST00000320356	NM_004456.4	118	cAg/cTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945109	151945109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	31	312	0	ENST00000262189.6:c.2410C>T	p.Leu804Phe	p.L804F	ENST00000262189	NM_170606.2	804	Ctt/Ttt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942848	68942848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	161	494	0	ENST00000288368.4:c.660G>T	p.Lys220Asn	p.K220N	ENST00000288368	NM_024870.2	220	aaG/aaT																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069589	69069589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	105	335	0	ENST00000288368.4:c.4264G>T	p.Asp1422Tyr	p.D1422Y	ENST00000288368	NM_024870.2	1422	Gac/Tac																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980517	70980517	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	131	503	0	ENST00000276594.2:c.860T>G	p.Val287Gly	p.V287G	ENST00000276594	NM_024504.3	287	gTg/gGg																																																																														
NBN	4683	MSKCC	GRCh37	8	90955525	90955525	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	27	357	0	ENST00000265433.3:c.2140C>T	p.Arg714Ter	p.R714*	ENST00000265433	NM_002485.4	714	Cga/Tga																																																																														
RAD21	5885	MSKCC	GRCh37	8	117875450	117875450	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	43	361	0	ENST00000297338.2:c.193C>T	p.Arg65Ter	p.R65*	ENST00000297338	NM_006265.2	65	Cga/Tga																																																																														
MYC	4609	MSKCC	GRCh37	8	128750980	128750980	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	86	453	0	ENST00000377970.2:c.517G>T	p.Asp173Tyr	p.D173Y	ENST00000377970	NM_002467.4	173	Gac/Tac																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87563491	87563491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	108	487	2	ENST00000277120.3:c.1879G>A	p.Asp627Asn	p.D627N	ENST00000277120		627	Gac/Aac																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229562	98229562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	65	358	3	ENST00000331920.6:c.2396C>A	p.Ser799Tyr	p.S799Y	ENST00000331920	NM_000264.3	799	tCt/tAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933958	39933958	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	154	288	0	ENST00000378444.4:c.641C>A	p.Ser214Ter	p.S214*	ENST00000378444	NM_001123385.1	214	tCa/tAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53250046	53250046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	46	216	0	ENST00000375401.3:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000375401	NM_004187.3	68	cGa/cAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70342421	70342421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	178	238	0	ENST00000374080.3:c.1312C>T	p.Arg438Cys	p.R438C	ENST00000374080		438	Cgc/Tgc																																																																														
BTK	695	MSKCC	GRCh37	X	100615614	100615614	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	58	214	0	ENST00000308731.7:c.718G>T	p.Glu240Ter	p.E240*	ENST00000308731	NM_000061.2	240	Gaa/Taa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217381	123217381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	69	172	0	ENST00000218089.9:c.3035G>A	p.Arg1012Gln	p.R1012Q	ENST00000218089	NM_001042749.1	1012	cGa/cAa																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504025	123504025	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0049202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	52	143	0	ENST00000371139.4:c.202-1G>T		p.X68_splice	ENST00000371139	NM_001114937.2	68																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	10	451	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0049472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	12	419	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
RARA	5914	MSKCC	GRCh37	17	38487554	38487554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	286	619	0	ENST00000254066.5:c.89delC	p.Pro30LeufsTer12	p.P30Lfs*12	ENST00000254066	NM_000964.3	28	ttC/tt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	277	499	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	46	498	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	21	504	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	245	405	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089706	27089706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	322	657	1	ENST00000324856.7:c.2666delG	p.Gly889AlafsTer2	p.G889Afs*2	ENST00000324856	NM_006015.4	888	Ggg/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	19	371	1	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	280	719	30	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346884	73346884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	139	224	1	ENST00000377767.4:c.1333del	p.Ser445HisfsTer20	p.S445Hfs*20	ENST00000377767	NM_014953.3	445	Tca/ca																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	265	720	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274794	123274794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	70	469	0	ENST00000358487.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000358487	NM_000141.4	375	tAc/tGc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	323	457	14	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	122	421	0	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																														
POLE	5426	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	349	712	0	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411071	63411071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	268	655	0	ENST00000330258.3:c.2096G>A	p.Arg699His	p.R699H	ENST00000330258	NM_152424.3	699	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	62	451	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	25	379	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048626	180048626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	304	816	0	ENST00000261937.6:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000261937	NM_182925.4	646	Gag/Aag																																																																														
CCND1	595	MSKCC	GRCh37	11	69458697	69458697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	276	520	0	ENST00000227507.2:c.512C>T	p.Ala171Val	p.A171V	ENST00000227507	NM_053056.2	171	gCg/gTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	189	331	0	ENST00000371953.3:c.376G>A	p.Ala126Thr	p.A126T	ENST00000371953	NM_000314.4	126	Gct/Act																																																																														
CDC73	79577	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	132	236	0	ENST00000367435.3:c.440G>A	p.Arg147His	p.R147H	ENST00000367435	NM_024529.4	147	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829585	72829585	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	277	562	0	ENST00000268489.5:c.6996delA	p.Lys2332AsnfsTer44	p.K2332Nfs*44	ENST00000268489	NM_006885.3	2332	aaA/aa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	43	657	0	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	182	666	4	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78435627	78435627	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	238	399	1	ENST00000370768.2:c.193del	p.Arg65AspfsTer3	p.R65Dfs*3	ENST00000370768	NM_003902.3	65	Aga/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	281	655	6	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793317	139793317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	370	723	1	ENST00000247668.2:c.125G>A	p.Arg42His	p.R42H	ENST00000247668	NM_021138.3	42	cGc/cAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18964097	18964097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	203	542	0	ENST00000262803.5:c.1094G>A	p.Arg365Gln	p.R365Q	ENST00000262803	NM_002911.3	365	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427984	49427984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	283	584	0	ENST00000301067.7:c.10606C>T	p.Arg3536Cys	p.R3536C	ENST00000301067	NM_003482.3	3536	Cgc/Tgc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11024682	11024682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	249	492	0	ENST00000327064.4:c.799C>T	p.Arg267Cys	p.R267C	ENST00000327064	NM_199141.1	267	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227659	36227659	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	69	547	0	ENST00000222270.7:c.7228A>G	p.Thr2410Ala	p.T2410A	ENST00000222270	NM_014727.1	2410	Act/Gct																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798600	45798600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	308	683	0	ENST00000372115.3:c.452C>T	p.Ala151Val	p.A151V	ENST00000372115	NM_001048171.1	151	gCt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89712007	89712007	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	139	202	0	ENST00000371953.3:c.626del	p.Gly209GlufsTer12	p.G209Efs*12	ENST00000371953	NM_000314.4	209	Gga/ga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64126710	64126710	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	G	G	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	121	250	1	ENST00000334205.4:c.7del	p.Asp3ThrfsTer19	p.D3Tfs*19	ENST00000334205	NM_003942.2	1	atG/at																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589331	28589331	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	255	356	0	ENST00000241453.7:c.2716T>C	p.Phe906Leu	p.F906L	ENST00000241453	NM_004119.2	906	Ttt/Ctt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831217	72831218	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	281	507	0	ENST00000268489.5:c.5363dup	p.Gln1789AlafsTer18	p.Q1789Afs*18	ENST00000268489	NM_006885.3	1788	ctg/ctTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89806459	89806459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	66	499	0	ENST00000389301.3:c.3877G>A	p.Glu1293Lys	p.E1293K	ENST00000389301	NM_000135.2	1293	Gag/Aag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63526149	63526149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	328	559	0	ENST00000307078.5:c.2477C>T	p.Thr826Met	p.T826M	ENST00000307078	NM_004655.3	826	aCg/aTg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354058	15354058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	26	613	0	ENST00000263377.2:c.2822del	p.Pro941LeufsTer8	p.P941Lfs*8	ENST00000263377	NM_058243.2	941	cCt/ct																																																																														
CIC	23152	MSKCC	GRCh37	19	42796588	42796588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	284	722	0	ENST00000575354.2:c.3145G>A	p.Gly1049Ser	p.G1049S	ENST00000575354	NM_015125.3	1049	Ggc/Agc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31387107	31387107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	324	557	0	ENST00000328111.2:c.1732C>A	p.Leu578Met	p.L578M	ENST00000328111	NM_006892.3	578	Ctg/Atg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31389099	31389101	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	35	455	0	ENST00000328111.2:c.2017_2019del	p.Phe673del	p.F673del	ENST00000328111	NM_006892.3	671	cTCTtc/ctc																																																																														
ATR	545	MSKCC	GRCh37	3	142168286	142168286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	46	340	0	ENST00000350721.4:c.7920G>T	p.Trp2640Cys	p.W2640C	ENST00000350721	NM_001184.3	2640	tgG/tgT																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753923	57753923	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	274	386	0	ENST00000274289.3:c.701A>G	p.Glu234Gly	p.E234G	ENST00000274289	NM_006622.3	234	gAa/gGa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641031	117641031	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	54	307	0	ENST00000368508.3:c.5940G>T	p.Lys1980Asn	p.K1980N	ENST00000368508	NM_002944.2	1980	aaG/aaT																																																																														
RHEB	6009	MSKCC	GRCh37	7	151216558	151216558	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	25	182	0	ENST00000262187.5:c.40T>C	p.Tyr14His	p.Y14H	ENST00000262187	NM_005614.3	14	Tac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	28	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	243	526	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112170777	112170780	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0049476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	152	494	0	ENST00000257430.4:c.1875_1878del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	625	CAGAca/ca																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30047522	30047522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	112	330	0	ENST00000331968.5:c.2479C>T	p.Arg827Cys	p.R827C	ENST00000331968	NM_002742.2	827	Cgc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591913	48591913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	24	406	0	ENST00000342988.3:c.1076G>A	p.Gly359Glu	p.G359E	ENST00000342988	NM_005359.5	359	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112162943	112162946	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	INS	AGGT	AGGT	TGTTTTTATAAC			P-0049476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	77	261	0	ENST00000257430.4:c.1547_1548+2delinsTGTTTTTATAAC		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	77	329	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0049477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	93	569	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983190	149983190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	77	430	1	ENST00000253339.5:c.3068C>T	p.Ser1023Phe	p.S1023F	ENST00000253339		1023	tCt/tTt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346028	73346028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	34	266	0	ENST00000377767.4:c.1510G>T	p.Val504Phe	p.V504F	ENST00000377767	NM_014953.3	504	Gtt/Ttt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937813	76937813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	56	447	1	ENST00000373344.5:c.2935G>A	p.Glu979Lys	p.E979K	ENST00000373344	NM_000489.3	979	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	14	268	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	56	571	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0049481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	64	409	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528105	157528105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	74	563	0	ENST00000346085.5:c.5830C>T	p.Arg1944Ter	p.R1944*	ENST00000346085	NM_020732.3	1944	Cga/Tga																																																																														
AR	367	MSKCC	GRCh37	X	66863151	66863151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	10	251	0	ENST00000374690.3:c.1670A>G	p.Gln557Arg	p.Q557R	ENST00000374690	NM_000044.3	557	cAg/cGg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217678	7217678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	54	407	0	ENST00000380728.2:c.249G>C	p.Lys83Asn	p.K83N	ENST00000380728		83	aaG/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	448	602	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943448	17943448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	506	747	0	ENST00000458235.1:c.2560G>A	p.Val854Met	p.V854M	ENST00000458235	NM_000215.3	854	Gtg/Atg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	1067	632	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578432	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	350	793	0	ENST00000269305.4:c.498dup	p.Gln167ThrfsTer14	p.Q167Tfs*14	ENST00000269305	NM_001126112.2	166	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	107	455	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1294328	1294328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	52	644	0	ENST00000310581.5:c.673G>A	p.Gly225Arg	p.G225R	ENST00000310581	NM_198253.2	225	Ggg/Agg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	30	299	0	ENST00000397062.3:c.72G>C	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgC																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564743	86564743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	29	701	0	ENST00000274376.6:c.475C>G	p.Leu159Val	p.L159V	ENST00000274376	NM_002890.2	159	Ctg/Gtg																																																																														
ALK	238	MSKCC	GRCh37	2	29455262	29455262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	53	741	0	ENST00000389048.3:c.2540G>A	p.Arg847Lys	p.R847K	ENST00000389048	NM_004304.4	847	aGg/aAg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46740354	46740354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	71	569	0	ENST00000371975.4:c.1834C>G	p.Gln612Glu	p.Q612E	ENST00000371975	NM_003579.3	612	Caa/Gaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692835	89692835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	27	152	0	ENST00000371953.3:c.319G>C	p.Asp107His	p.D107H	ENST00000371953	NM_000314.4	107	Gat/Cat																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925522	114925522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	60	663	0	ENST00000543371.1:c.1600C>T	p.Pro534Ser	p.P534S	ENST00000543371	NM_001198531.1	534	Ccg/Tcg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858649	57858649	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	41	493	0	ENST00000228682.2:c.387G>C	p.Met129Ile	p.M129I	ENST00000228682	NM_005269.2	129	atG/atC																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774200	66774200	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	75	948	0	ENST00000307102.5:c.676A>T	p.Thr226Ser	p.T226S	ENST00000307102	NM_002755.3	226	Aca/Tca																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119729	70119729	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	26	413	0	ENST00000245479.2:c.731A>T	p.Asp244Val	p.D244V	ENST00000245479	NM_000346.3	244	gAc/gTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219694	36219694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	64	825	0	ENST00000222270.7:c.4591G>T	p.Val1531Leu	p.V1531L	ENST00000222270	NM_014727.1	1531	Gtg/Ttg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62294181	62294181	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	74	583	0	ENST00000508582.2:c.550-1G>T		p.X184_splice	ENST00000508582		184																																																																															
ERG	2078	MSKCC	GRCh37	21	39763581	39763581	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	21	375	0	ENST00000288319.7:c.871G>A	p.Asp291Asn	p.D291N	ENST00000288319	NM_182918.3	291	Gat/Aat																																																																														
EP300	2033	MSKCC	GRCh37	22	41547924	41547924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	63	517	0	ENST00000263253.7:c.2905G>C	p.Glu969Gln	p.E969Q	ENST00000263253	NM_001429.3	969	Gag/Cag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278148	41278148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	91	534	0	ENST00000349496.5:c.2024C>T	p.Ser675Leu	p.S675L	ENST00000349496	NM_001904.3	675	tCa/tTa																																																																														
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	18	323	0	ENST00000257430.4:c.4057G>C	p.Glu1353Gln	p.E1353Q	ENST00000257430	NM_000038.5	1353	Gaa/Caa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	90	410	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	187	782	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	29	271	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	11	42	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	84	538	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	97	359	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	84	530	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86667971	86667971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	52	301	0	ENST00000274376.6:c.1735C>T	p.Arg579Trp	p.R579W	ENST00000274376	NM_002890.2	579	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	23	286	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	101	400	0	ENST00000371953.3:c.389delG	p.Arg130GlnfsTer4	p.R130Qfs*4	ENST00000371953	NM_000314.4	130	cGa/ca																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274794	123274794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	92	466	0	ENST00000358487.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000358487	NM_000141.4	375	tAc/tGc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	66	753	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223109	41223109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	89	527	0	ENST00000357654.3:c.4822G>A	p.Ala1608Thr	p.A1608T	ENST00000357654	NM_007294.3	1608	Gca/Aca																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	63	641	2	ENST00000440232.2:c.342delG	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	84	781	0	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5225777	5225777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	66	691	1	ENST00000357368.4:c.2455G>A	p.Ala819Thr	p.A819T	ENST00000357368	NM_002850.3	819	Gct/Act																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912858	50912858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	199	918	1	ENST00000440232.2:c.2089G>A	p.Ala697Thr	p.A697T	ENST00000440232	NM_002691.3	697	Gcc/Acc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40500444	40500444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	46	459	0	ENST00000264657.5:c.91C>T	p.Arg31Trp	p.R31W	ENST00000264657	NM_139276.2	31	Cgg/Tgg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270529	98270530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778175153		P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	24	282	1	ENST00000331920.6:c.114dup	p.Leu39AlafsTer51	p.L39Afs*51	ENST00000331920	NM_000264.3	38	-/G																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307280	65307283	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	60	328	0	ENST00000342505.4:c.2405_2408delAAGA	p.Lys802ArgfsTer11	p.K802Rfs*11	ENST00000342505	NM_002227.2	802	aAAGAg/ag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969087	93969087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	19	266	0	ENST00000369303.4:c.1909C>T	p.Arg637Cys	p.R637C	ENST00000369303	NM_004440.3	637	Cgt/Tgt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508557	106508557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	59	452	0	ENST00000359195.3:c.551G>A	p.Arg184His	p.R184H	ENST00000359195	NM_002649.2	184	cGc/cAc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	123	732	3	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	99	516	1	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420108	49420108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	47	582	0	ENST00000301067.7:c.15641G>A	p.Arg5214His	p.R5214H	ENST00000301067	NM_003482.3	5214	cGc/cAc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176353	24176353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	102	760	0	ENST00000263121.7:c.1144G>A	p.Ala382Thr	p.A382T	ENST00000263121	NM_003073.3	382	Gcc/Acc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798457	32798457	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	109	689	2	ENST00000374899.4:c.1399delG	p.Val467LeufsTer2	p.V467Lfs*2	ENST00000374899	NM_018833.2	467	Gtt/tt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	86	728	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																														
WT1	7490	MSKCC	GRCh37	11	32450105	32450105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	78	673	1	ENST00000332351.3:c.707C>T	p.Ala236Val	p.A236V	ENST00000332351	NM_024426.4	236	gCg/gTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210785	36210785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	107	840	0	ENST00000222270.7:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000222270	NM_014727.1	179	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100369	27100369	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	178	556	0	ENST00000324856.7:c.4081A>G	p.Met1361Val	p.M1361V	ENST00000324856	NM_006015.4	1361	Atg/Gtg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487629	56487629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	72	612	0	ENST00000267101.3:c.1562G>A	p.Arg521Gln	p.R521Q	ENST00000267101	NM_001982.3	521	cGa/cAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157730	106157732	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	70	301	0	ENST00000380013.4:c.2636_2638del	p.Leu879del	p.L879del	ENST00000380013	NM_001127208.2	877	gaTCTt/gat																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701200	43701200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	80	537	0	ENST00000382044.4:c.5495C>T	p.Ser1832Phe	p.S1832F	ENST00000382044	NM_001141980.1	1832	tCt/tTt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981483	70981483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	132	748	0	ENST00000276594.2:c.613G>A	p.Val205Ile	p.V205I	ENST00000276594	NM_024504.3	205	Gtt/Att																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643738	38643738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	52	615	2	ENST00000299084.4:c.1208G>A	p.Arg403Gln	p.R403Q	ENST00000299084	NM_152594.2	403	cGa/cAa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845564	63845564	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	51	313	0	ENST00000279873.7:c.1306del	p.Thr436GlnfsTer43	p.T436Qfs*43	ENST00000279873	NM_032199.2	435	Aaa/aa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120506308	120506308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140311741		P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	65	469	1	ENST00000256646.2:c.1804G>A	p.Ala602Thr	p.A602T	ENST00000256646	NM_024408.3	602	Gcc/Acc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510151	120510151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	132	512	0	ENST00000256646.2:c.1358G>A	p.Cys453Tyr	p.C453Y	ENST00000256646	NM_024408.3	453	tGt/tAt																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518085	69518085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	61	746	0	ENST00000294312.3:c.280G>T	p.Gly94Cys	p.G94C	ENST00000294312	NM_005117.2	94	Ggc/Tgc																																																																														
YAP1	10413	MSKCC	GRCh37	11	102033255	102033255	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	49	521	0	ENST00000282441.5:c.641C>G	p.Ala214Gly	p.A214G	ENST00000282441	NM_001130145.2	214	gCc/gGc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	394683	394683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	68	535	0	ENST00000399788.2:c.5012C>T	p.Pro1671Leu	p.P1671L	ENST00000399788	NM_001042603.1	1671	cCa/cTa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557650	21557650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	49	620	0	ENST00000382592.4:c.2195A>G	p.Tyr732Cys	p.Y732C	ENST00000382592	NM_014572.2	732	tAc/tGc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061583	38061583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	59	278	0	ENST00000250448.2:c.406C>T	p.Pro136Ser	p.P136S	ENST00000250448	NM_004496.3	136	Ccg/Tcg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572033	95572033	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	43	445	0	ENST00000343455.3:c.3075A>C	p.Glu1025Asp	p.E1025D	ENST00000343455	NM_177438.2	1025	gaA/gaC																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43705433	43705433	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	48	651	0	ENST00000382044.4:c.5189A>G	p.Asn1730Ser	p.N1730S	ENST00000382044	NM_001141980.1	1730	aAc/aGc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778902	3778902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	78	687	0	ENST00000262367.5:c.6146C>T	p.Ala2049Val	p.A2049V	ENST00000262367	NM_004380.2	2049	gCt/gTt																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325729	30325729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	46	314	0	ENST00000322652.5:c.1927T>C	p.Tyr643His	p.Y643H	ENST00000322652	NM_015355.2	643	Tat/Cat																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375417	15375417	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	55	689	0	ENST00000263377.2:c.1010A>G	p.Asp337Gly	p.D337G	ENST00000263377	NM_058243.2	337	gAc/gGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213553	36213553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	144	924	1	ENST00000222270.7:c.2655G>T	p.Met885Ile	p.M885I	ENST00000222270	NM_014727.1	885	atG/atT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214112	36214112	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	92	787	0	ENST00000222270.7:c.2938T>A	p.Ser980Thr	p.S980T	ENST00000222270	NM_014727.1	980	Tcc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229244	36229244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	64	706	0	ENST00000222270.7:c.7934G>A	p.Gly2645Asp	p.G2645D	ENST00000222270	NM_014727.1	2645	gGc/gAc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965846	25965846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	95	585	0	ENST00000435504.4:c.3360G>T	p.Met1120Ile	p.M1120I	ENST00000435504		1120	atG/atT																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661479	227661479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	49	700	0	ENST00000305123.5:c.1976C>T	p.Pro659Leu	p.P659L	ENST00000305123	NM_005544.2	659	cCc/cTc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795075	242795075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	67	783	1	ENST00000334409.5:c.134C>T	p.Thr45Ile	p.T45I	ENST00000334409	NM_005018.2	45	aCc/aTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019139	31019139	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	70	412	1	ENST00000375687.4:c.734A>T	p.Asn245Ile	p.N245I	ENST00000375687	NM_015338.5	245	aAc/aTc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42870105	42870105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	168	583	0	ENST00000398585.3:c.67C>T	p.His23Tyr	p.H23Y	ENST00000398585	NM_001135099.1	23	Cat/Tat																																																																														
GATA2	2624	MSKCC	GRCh37	3	128199922	128199922	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	81	636	1	ENST00000341105.2:c.1383del	p.Ser462ProfsTer15	p.S462Pfs*15	ENST00000341105	NM_032638.4	461	ccC/cc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430510	181430515	+	inframe_deletion	In_Frame_Del	DEL	AGAAGG	AGAAGG	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	63	453	0	ENST00000325404.1:c.363_368del	p.Lys121_Asp123delinsAsn	p.K121_D123delinsN	ENST00000325404	NM_003106.3	121	aAGAAGGat/aat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31468161	31468161	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	31	440	0	ENST00000344624.3:c.2251T>G	p.Ser751Ala	p.S751A	ENST00000344624		751	Tct/Gct																																																																														
APC	324	MSKCC	GRCh37	5	112176906	112176906	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	31	392	0	ENST00000257430.4:c.5615T>A	p.Val1872Asp	p.V1872D	ENST00000257430	NM_000038.5	1872	gTt/gAt																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805399	32805399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	81	575	0	ENST00000374899.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000374899	NM_018833.2	175	Cgt/Tgt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729789	41729789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	31	405	0	ENST00000242208.4:c.740G>A	p.Cys247Tyr	p.C247Y	ENST00000242208	NM_002192.2	247	tGc/tAc																																																																														
CDK6	1021	MSKCC	GRCh37	7	92462496	92462496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	42	645	0	ENST00000265734.4:c.142C>T	p.Gln48Ter	p.Q48*	ENST00000265734	NM_001259.6	48	Cag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513324	106513324	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	26	321	0	ENST00000359195.3:c.2232del	p.Val745SerfsTer47	p.V745Sfs*47	ENST00000359195	NM_002649.2	743	cAa/ca																																																																														
CD274	29126	MSKCC	GRCh37	9	5463086	5463086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	38	328	0	ENST00000381577.3:c.647C>A	p.Pro216His	p.P216H	ENST00000381577	NM_014143.3	216	cCt/cAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390602	139390602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	125	811	0	ENST00000277541.6:c.7589C>T	p.Ser2530Phe	p.S2530F	ENST00000277541	NM_017617.3	2530	tCc/tTc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466030	69466041	+	protein_altering_variant	In_Frame_Del	DEL	GTGCGGGACGTG	GTGCGGGACGTG	CCGCACGTC			P-0049485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	146	735	3	ENST00000227507.2:c.868_879delinsCCGCACGTC	p.Val290_Asp292delinsProHis	p.V290_D292delinsPH	ENST00000227507	NM_053056.2	290	GTGCGGGACGTG/CCGCACGTC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	71	374	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	101	453	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	103	567	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
MSH6	2956	MSKCC	GRCh37	2	48032767	48032768	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	73	265	0	ENST00000234420.5:c.3573dup	p.Val1192CysfsTer2	p.V1192Cfs*2	ENST00000234420	NM_000179.2	1189	-/T																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	78	320	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	81	469	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	120	409	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105938	27105938	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	130	568	0	ENST00000324856.7:c.5549A>G	p.Asp1850Gly	p.D1850G	ENST00000324856	NM_006015.4	1850	gAc/gGc																																																																														
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	78	311	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																														
RARA	5914	MSKCC	GRCh37	17	38512377	38512377	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	84	479	0	ENST00000254066.5:c.1293delG	p.Arg432GlyfsTer211	p.R432Gfs*211	ENST00000254066	NM_000964.3	430	Ggg/gg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200073	128200073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	228	679	1	ENST00000341105.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000341105	NM_032638.4	411	gCg/gTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970914	79970915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	194	452	10	ENST00000265081.6:c.1148dupA	p.Asn385GlnfsTer19	p.N385Qfs*19	ENST00000265081	NM_002439.4	380	-/A																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098540	11098540	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	192	564	0	ENST00000344626.4:c.1062delC	p.Ile355SerfsTer56	p.I355Sfs*56	ENST00000344626	NM_003072.3	353	aCc/ac																																																																														
FLT4	2324	MSKCC	GRCh37	5	180035975	180035975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138599624		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	96	619	3	ENST00000261937.6:c.3886G>A	p.Gly1296Ser	p.G1296S	ENST00000261937	NM_182925.4	1296	Ggc/Agc																																																																														
SETD8	0	MSKCC	GRCh37	12	123874011	123874016	+	inframe_deletion	In_Frame_Del	DEL	GGCGGC	GGCGGC	-			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	14	50	0	ENST00000330479.4:c.59_64del	p.Ala20_Ala21del	p.A20_A21del	ENST00000330479	NM_020382.3	14	gaGGCGGCg/gag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260447	16260447	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	136	483	0	ENST00000375759.3:c.7715del	p.Pro2572ArgfsTer11	p.P2572Rfs*11	ENST00000375759	NM_015001.2	2571	gCc/gc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58143021	58143021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	194	726	2	ENST00000257904.6:c.763C>T	p.Arg255Cys	p.R255C	ENST00000257904	NM_000075.3	255	Cgc/Tgc																																																																														
ABL1	25	MSKCC	GRCh37	9	133738156	133738156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	34	465	1	ENST00000318560.5:c.556G>A	p.Val186Ile	p.V186I	ENST00000318560	NM_005157.4	186	Gtc/Atc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21639508	21639508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138278747		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	64	208	0	ENST00000421138.2:c.406G>A	p.Val136Ile	p.V136I	ENST00000421138		136	Gtc/Atc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420598	49420598	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	198	741	0	ENST00000301067.7:c.15151A>G	p.Asn5051Asp	p.N5051D	ENST00000301067	NM_003482.3	5051	Aac/Gac																																																																														
POLE	5426	MSKCC	GRCh37	12	133233794	133233794	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	50	563	0	ENST00000320574.5:c.3510del	p.Lys1170AsnfsTer49	p.K1170Nfs*49	ENST00000320574	NM_006231.2	1170	aaA/aa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953950	32953950	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	86	341	0	ENST00000380152.3:c.9017A>G	p.Tyr3006Cys	p.Y3006C	ENST00000380152		3006	tAc/tGc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986709	36986709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	15	34	0	ENST00000354822.5:c.980C>T	p.Ala327Val	p.A327V	ENST00000354822	NM_001079668.2	327	gCg/gTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658880	3658880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149117119		P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	146	523	1	ENST00000294008.3:c.86G>A	p.Arg29His	p.R29H	ENST00000294008	NM_032444.2	29	cGc/cAc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56857718	56857718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	40	453	0	ENST00000308159.5:c.754A>G	p.Met252Val	p.M252V	ENST00000308159	NM_014669.4	252	Atg/Gtg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40468878	40468879	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	55	415	1	ENST00000264657.5:c.2185dupC	p.Arg729ProfsTer12	p.R729Pfs*12	ENST00000264657	NM_139276.2	729	cgc/cCgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222759	5222759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	195	639	1	ENST00000357368.4:c.3044G>A	p.Arg1015His	p.R1015H	ENST00000357368	NM_002850.3	1015	cGc/cAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574884	41574884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	51	616	1	ENST00000263253.7:c.7169C>T	p.Ala2390Val	p.A2390V	ENST00000263253	NM_001429.3	2390	gCc/gTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280754	41280755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	143	515	0	ENST00000349496.5:c.2271dup	p.His758AlafsTer13	p.H758Afs*13	ENST00000349496	NM_001904.3	756	ctg/ctGg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141559291	141559291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	49	734	0	ENST00000220592.5:c.1510A>G	p.Met504Val	p.M504V	ENST00000220592	NM_012154.3	504	Atg/Gtg																																																																														
ABL1	25	MSKCC	GRCh37	9	133710882	133710882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	53	341	0	ENST00000318560.5:c.49C>A	p.Leu17Met	p.L17M	ENST00000318560	NM_005157.4	17	Ctg/Atg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409962	63409962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	42	575	0	ENST00000330258.3:c.3205C>A	p.Pro1069Thr	p.P1069T	ENST00000330258	NM_152424.3	1069	Ccc/Acc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89845236	89845236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	253	497	0	ENST00000389301.3:c.1799G>A	p.Arg600His	p.R600H	ENST00000389301	NM_000135.2	600	cGt/cAt																																																																														
SUFU	51684	MSKCC	GRCh37	10	104309824	104309824	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	194	434	0	ENST00000369902.3:c.415G>T	p.Glu139Ter	p.E139*	ENST00000369902	NM_016169.3	139	Gag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436671	52436692	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GTCCTTCTCTGGTCATCAATCT	GTCCTTCTCTGGTCATCAATCT	-			P-0049487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	275	686	0	ENST00000460680.1:c.1984-2_2003del		p.X662_splice	ENST00000460680	NM_004656.3	662																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436808	52436812	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTT	CTCTT	-			P-0049487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	286	645	0	ENST00000460680.1:c.1966_1970del	p.Lys656GlufsTer6	p.K656Efs*6	ENST00000460680	NM_004656.3	656	AAGAGg/g																																																																														
ETV1	2115	MSKCC	GRCh37	7	14027740	14027740	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	162	337	0	ENST00000405192.2:c.104T>A	p.Ile35Asn	p.I35N	ENST00000405192	NM_001163147.1	35	aTt/aAt																																																																														
MYC	4609	MSKCC	GRCh37	8	128751247	128751247	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	191	425	0	ENST00000377970.2:c.784A>T	p.Thr262Ser	p.T262S	ENST00000377970	NM_002467.4	262	Acc/Tcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0049488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	996	414	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	48916759	48916759	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	170	395	3	ENST00000267163.4:c.289G>T	p.Glu97Ter	p.E97*	ENST00000267163	NM_000321.2	97	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0049488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	465	656	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518000	8518000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	222	383	0	ENST00000356435.5:c.1391A>G	p.Asn464Ser	p.N464S	ENST00000356435		464	aAc/aGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	632	522	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	294	272	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5260818	5260818	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	241	575	0	ENST00000357368.4:c.593G>C	p.Arg198Pro	p.R198P	ENST00000357368	NM_002850.3	198	cGa/cCa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411291	63411291	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	603	306	1	ENST00000330258.3:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000330258	NM_152424.3	626	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480350	56480350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147905731		P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	206	463	0	ENST00000267101.3:c.457G>A	p.Asp153Asn	p.D153N	ENST00000267101	NM_001982.3	153	Gat/Aat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245512	153245512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	664	311	0	ENST00000281708.4:c.1679A>G	p.Asp560Gly	p.D560G	ENST00000281708	NM_033632.3	560	gAt/gGt																																																																														
SETD8	0	MSKCC	GRCh37	12	123874022	123874022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	21	52	0	ENST00000330479.4:c.53C>T	p.Ala18Val	p.A18V	ENST00000330479	NM_020382.3	18	gCg/gTg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350815	15350815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	73	514	0	ENST00000263377.2:c.3188C>T	p.Pro1063Leu	p.P1063L	ENST00000263377	NM_058243.2	1063	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	637	620	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317081	87317081	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201490630		P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	206	399	0	ENST00000277120.3:c.220G>A	p.Ala74Thr	p.A74T	ENST00000277120		74	Gca/Aca																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62325788	62325788	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs116053476		P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	634	640	0	ENST00000508582.2:c.3128A>G	p.Gln1043Arg	p.Q1043R	ENST00000508582		1043	cAa/cGa																																																																														
PGR	5241	MSKCC	GRCh37	11	100998957	100998957	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	279	604	0	ENST00000325455.5:c.845T>G	p.Leu282Arg	p.L282R	ENST00000325455	NM_001202474.3	282	cTg/cGg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906973	32906973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	86	386	0	ENST00000380152.3:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000380152		453	cCa/cTa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251007	99251007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	197	547	0	ENST00000268035.6:c.311C>G	p.Thr104Arg	p.T104R	ENST00000268035	NM_000875.3	104	aCg/aGg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566840	212566840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	53	276	0	ENST00000342788.4:c.1341C>G	p.Phe447Leu	p.F447L	ENST00000342788	NM_005235.2	447	ttC/ttG																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956820	68956820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	90	481	0	ENST00000288368.4:c.938G>A	p.Gly313Asp	p.G313D	ENST00000288368	NM_024870.2	313	gGc/gAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589663	67589663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	99	198	2	ENST00000274335.5:c.1425+1G>A		p.X475_splice	ENST00000274335		475																																																																															
RECQL	5965	MSKCC	GRCh37	12	21628716	21628716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	121	321	4	ENST00000421138.2:c.992C>T	p.Thr331Met	p.T331M	ENST00000421138		331	aCg/aTg																																																																														
CASP8	841	MSKCC	GRCh37	2	202137439	202137440	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0049515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	162	307	2	ENST00000358485.4:c.669_670delTG	p.Ala224ProfsTer14	p.A224Pfs*14	ENST00000358485	NM_001080125.1	223	TGt/t																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940778	49940778	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	260	538	0	ENST00000296474.3:c.265C>T	p.Gln89Ter	p.Q89*	ENST00000296474	NM_002447.2	89	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1293868	1293868	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	278	690	1	ENST00000310581.5:c.1133G>C	p.Arg378Thr	p.R378T	ENST00000310581	NM_198253.2	378	aGg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0049516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	305	533	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
ERF	2077	MSKCC	GRCh37	19	42753098	42753098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	227	711	1	ENST00000222329.4:c.1166G>A	p.Arg389Gln	p.R389Q	ENST00000222329	NM_006494.2	389	cGg/cAg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115284147	115284148	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CA	CA	AG			P-0049516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	123	323	0	ENST00000438362.2:c.138_138+1delinsCT		p.X46_splice	ENST00000438362	NM_001242891.1	46																																																																															
PREX2	80243	MSKCC	GRCh37	8	68968138	68968138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	16	444	0	ENST00000288368.4:c.1167G>T	p.Met389Ile	p.M389I	ENST00000288368	NM_024870.2	389	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	92	352	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	126	350	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0049518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	47	349	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100968	27100968	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	82	515	0	ENST00000324856.7:c.4251del	p.Ala1418LeufsTer63	p.A1418Lfs*63	ENST00000324856	NM_006015.4	1417	cAa/ca																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136259	2136264	+	inframe_deletion	In_Frame_Del	DEL	GGGCCT	GGGCCT	-			P-0049518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	103	627	0	ENST00000219476.3:c.4733_4738del	p.Leu1578_Gly1579del	p.L1578_G1579del	ENST00000219476	NM_000548.3	1576	acGGGCCTg/acg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591091	67591092	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTAT			P-0049518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	42	218	0	ENST00000274335.5:c.1686_1689dup	p.Asn564TyrfsTer5	p.N564Yfs*5	ENST00000274335		562	cgt/cGTATgt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588970	67588985	+	protein_altering_variant	In_Frame_Del	DEL	CCTTTTTGGTACGAGA	CCTTTTTGGTACGAGA	T			P-0049518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	19	206	0	ENST00000274335.5:c.1061_1076delinsT	p.Thr354_Asp359delinsIle	p.T354_D359delinsI	ENST00000274335		354	aCCTTTTTGGTACGAGAt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	584	655	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434122	12434122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	253	333	0	ENST00000287820.6:c.490C>T	p.Arg164Trp	p.R164W	ENST00000287820	NM_015869.4	164	Cgg/Tgg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37061882	37061882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	114	507	0	ENST00000231790.2:c.966C>G	p.Ile322Met	p.I322M	ENST00000231790	NM_000249.3	322	atC/atG																																																																														
MET	4233	MSKCC	GRCh37	7	116415054	116415071	+	inframe_deletion	In_Frame_Del	DEL	ACTGTCCACATTGACCTC	ACTGTCCACATTGACCTC	-			P-0049519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	164	525	0	ENST00000397752.3:c.3149_3166del	p.Thr1050_Leu1055del	p.T1050_L1055del	ENST00000397752	NM_000245.2	1050	ACTGTCCACATTGACCTC/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	35	538	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	276	626	2	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112175068	112175069	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	62	203	0	ENST00000257430.4:c.3778_3779del	p.Gln1260AspfsTer15	p.Q1260Dfs*15	ENST00000257430	NM_000038.5	1259	atACag/atag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118371775	118371775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	155	285	0	ENST00000534358.1:c.6232C>T	p.Arg2078Cys	p.R2078C	ENST00000534358	NM_005933.3	2078	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100181	27100182	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	92	406	0	ENST00000324856.7:c.3999_4001dupGCA	p.Gln1334dup	p.Q1334dup	ENST00000324856	NM_006015.4	1334	ccg/ccGCAg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285554	38285554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	377	436	3	ENST00000425967.3:c.599C>T	p.Pro200Leu	p.P200L	ENST00000425967	NM_001174067.1	200	cCg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448270	56448270	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	224	501	0	ENST00000407977.2:c.375+2T>G		p.X125_splice	ENST00000407977		125																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573512	48573520	+	inframe_deletion	In_Frame_Del	DEL	TGAAACATT	TGAAACATT	-			P-0049521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	75	259	0	ENST00000342988.3:c.98_106del	p.Glu33_Phe35del	p.E33_F35del	ENST00000342988	NM_005359.5	32	agTGAAACATTt/agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	72	297	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	50	559	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70355083	70355083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	64	624	1	ENST00000374080.3:c.5005G>T	p.Asp1669Tyr	p.D1669Y	ENST00000374080		1669	Gat/Tat																																																																														
ATM	472	MSKCC	GRCh37	11	108115753	108115753	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0049552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	11	129	0	ENST00000278616.4:c.901G>C	p.Gly301Arg	p.G301R	ENST00000278616	NM_000051.3	301	Ggt/Cgt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99155388	99155388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	20	375	1	ENST00000074304.5:c.614C>T	p.Ala205Val	p.A205V	ENST00000074304	NM_001134224.1	205	gCg/gTg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737831	145737831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	97	762	0	ENST00000428558.2:c.2999T>C	p.Leu1000Pro	p.L1000P	ENST00000428558	NM_004260.3	1000	cTg/cCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	195	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0049553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	207	746	1	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998985	11998985	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	66	271	0	ENST00000353533.5:c.487C>T	p.Gln163Ter	p.Q163*	ENST00000353533	NM_003010.3	163	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	257	714	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																																																														
STK40	83931	MSKCC	GRCh37	1	36807399	36807399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	131	751	1	ENST00000373129.3:c.1265C>T	p.Ser422Phe	p.S422F	ENST00000373129	NM_032017.1	422	tCc/tTc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982309	201982309	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	113	668	0	ENST00000359651.3:c.689-1G>A		p.X230_splice	ENST00000359651		230																																																																															
BRCA2	675	MSKCC	GRCh37	13	32953653	32953653	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0049556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	43	271	0	ENST00000380152.3:c.8953+1G>C		p.X2985_splice	ENST00000380152		2985																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49422724	49422725	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	98	529	0	ENST00000301067.7:c.14268dupA	p.Pro4757ThrfsTer25	p.P4757Tfs*25	ENST00000301067	NM_003482.3	4756	-/A																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751549	57751549	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs147887503		P-0049556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	31	297	0	ENST00000274289.3:c.1442G>T	p.Gly481Val	p.G481V	ENST00000274289	NM_006622.3	481	gGa/gTa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310478	65310491	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	AGCTTGATGAATGG	AGCTTGATGAATGG	TCACTCACC			P-0049556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	81	444	0	ENST00000342505.4:c.2197_2210delinsGGTGAGTGA	p.Pro733GlyfsTer3	p.P733Gfs*3	ENST00000342505	NM_002227.2	733	CCATTCATCAAGCTc/GGTGAGTGAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	15	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603041	48603041	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	27	259	0	ENST00000342988.3:c.1342C>T	p.Gln448Ter	p.Q448*	ENST00000342988	NM_005359.5	448	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	36	566	0	ENST00000269305.4:c.641del	p.His214LeufsTer33	p.H214Lfs*33	ENST00000269305	NM_001126112.2	214	cAt/ct																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273231	18273231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	39	517	1	ENST00000222254.8:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000222254	NM_005027.3	342	Gag/Aag																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652353	48652353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	16	426	0	ENST00000376670.3:c.1024G>A	p.Gly342Ser	p.G342S	ENST00000376670	NM_002049.3	342	Ggt/Agt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424685	49424686	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	36	575	0	ENST00000301067.7:c.13661_13662del	p.Gln4554ProfsTer20	p.Q4554Pfs*20	ENST00000301067	NM_003482.3	4554	cAG/c																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125476	47125476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	26	357	0	ENST00000409792.3:c.5794C>T	p.Gln1932Ter	p.Q1932*	ENST00000409792	NM_014159.6	1932	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0049558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	152	409	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0049558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	138	721	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349957	15349957	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	103	731	0	ENST00000263377.2:c.3695G>C	p.Arg1232Pro	p.R1232P	ENST00000263377	NM_058243.2	1232	cGg/cCg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0049559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	526	557	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	672	552	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551603	150551603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	127	525	2	ENST00000369026.2:c.404G>A	p.Gly135Glu	p.G135E	ENST00000369026	NM_021960.4	135	gGg/gAg																																																																														
RB1	5925	MSKCC	GRCh37	13	48955482	48955482	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	398	310	0	ENST00000267163.4:c.1600del	p.Ser534ValfsTer9	p.S534Vfs*9	ENST00000267163	NM_000321.2	533	gAa/ga																																																																														
ATR	545	MSKCC	GRCh37	3	142222219	142222219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	612	301	1	ENST00000350721.4:c.5273G>A	p.Gly1758Glu	p.G1758E	ENST00000350721	NM_001184.3	1758	gGa/gAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55214320	55214320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	165	551	1	ENST00000275493.2:c.446G>T	p.Arg149Leu	p.R149L	ENST00000275493	NM_005228.3	149	cGg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	316	600	1	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627654	14627654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	296	545	3	ENST00000254322.2:c.416G>T	p.Gly139Val	p.G139V	ENST00000254322	NM_006145.1	139	gGt/gTt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056100	26056100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	206	337	0	ENST00000343677.2:c.557C>A	p.Ala186Asp	p.A186D	ENST00000343677	NM_005319.3	186	gCc/gAc																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732469	74732469	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	442	428	0	ENST00000359995.5:c.440C>G	p.Ser147Trp	p.S147W	ENST00000359995	NM_001195427.1	147	tCg/tGg																																																																														
HRAS	3265	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	367	896	0	ENST00000311189.7:c.38G>A	p.Gly13Asp	p.G13D	ENST00000311189		13	gGt/gAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468517	89468517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	189	341	0	ENST00000336596.2:c.2051G>A	p.Arg684Gln	p.R684Q	ENST00000336596	NM_005233.5	684	cGa/cAa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652009	36652010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	80	1196	0	ENST00000244741.5:c.133dupG	p.Ala45GlyfsTer3	p.A45Gfs*3	ENST00000244741	NM_000389.4	44	gag/gaGg																																																																														
NF1	4763	MSKCC	GRCh37	17	29665042	29665042	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	259	431	0	ENST00000358273.4:c.6705-1G>A		p.X2235_splice	ENST00000358273	NM_001042492.2	2235																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62323143	62323143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	417	797	0	ENST00000508582.2:c.2677G>A	p.Glu893Lys	p.E893K	ENST00000508582		893	Gaa/Aaa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522385	176522385	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	179	1072	1	ENST00000292408.4:c.1574A>G	p.Lys525Arg	p.K525R	ENST00000292408	NM_213647.1	525	aAg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0049595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	1002	1024	1	ENST00000269305.4:c.394A>T	p.Lys132Ter	p.K132*	ENST00000269305	NM_001126112.2	132	Aag/Tag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590844	95590844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	112	411	0	ENST00000343455.3:c.1065A>G	p.Ile355Met	p.I355M	ENST00000343455	NM_177438.2	355	atA/atG																																																																														
EP300	2033	MSKCC	GRCh37	22	41565526	41565526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	84	344	0	ENST00000263253.7:c.4192C>T	p.Leu1398Phe	p.L1398F	ENST00000263253	NM_001429.3	1398	Ctc/Ttc																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518427	69518427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2276	605	218	0	ENST00000294312.3:c.218G>T	p.Gly73Val	p.G73V	ENST00000294312	NM_005117.2	73	gGc/gTc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577457	64577457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	79	809	0	ENST00000337652.1:c.125G>T	p.Gly42Val	p.G42V	ENST00000337652	NM_130803.2	42	gGc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431357	49431357	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	221	748	0	ENST00000301067.7:c.9782A>C	p.Gln3261Pro	p.Q3261P	ENST00000301067	NM_003482.3	3261	cAg/cCg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811771	102811771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	74	615	0	ENST00000307046.8:c.413C>A	p.Pro138Gln	p.P138Q	ENST00000307046	NM_001111285.1	138	cCa/cAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341275	89341275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	89	358	0	ENST00000301030.4:c.7660G>A	p.Ala2554Thr	p.A2554T	ENST00000301030	NM_001256183.1	2554	Gcc/Acc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584499	187584524	+	frameshift_variant	Frame_Shift_Del	DEL	AATTTTGTACATGAGCTTGTCATTAG	AATTTTGTACATGAGCTTGTCATTAG	-			P-0049595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	233	452	0	ENST00000441802.2:c.3509_3534del	p.Ser1170TyrfsTer14	p.S1170Yfs*14	ENST00000441802	NM_005245.3	1170	tCTAATGACAAGCTCATGTACAAAATT/t																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146219	38146219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1218	291	726	0	ENST00000317025.8:c.3287C>T	p.Pro1096Leu	p.P1096L	ENST00000317025	NM_023034.1	1096	cCc/cTc																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207509	29207513	+	missense_variant	Missense_Mutation	ONP	CGGGC	CGGGC	TGGGG			P-0049595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	242	810	0	ENST00000240100.2:c.283_287delinsCCCCA	p.Ala95_Arg96delinsProHis	p.A95_R96delinsPH	ENST00000240100	NM_001394.6	95	GCCCGc/CCCCAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012098-T06-IM6									Unknown	SOMATIC				MSK-IMPACT			719	97	581	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
RB1	5925	MSKCC	GRCh37	13	48878083	48878117	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCG	CCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCG	-			P-0012098-T06-IM6									Unknown	SOMATIC				MSK-IMPACT			250	59	161	0	ENST00000267163.4:c.45_79del	p.Ala16ProfsTer3	p.A16Pfs*3	ENST00000267163	NM_000321.2	12	aCCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCG/a																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242482	+	protein_altering_variant	In_Frame_Del	DEL	GGAATTAAGAGAAGCAAC	GGAATTAAGAGAAGCAAC	AAT			P-0012098-T06-IM6									Unknown	SOMATIC				MSK-IMPACT			487	184	289	1	ENST00000275493.2:c.2235_2252delinsAAT	p.Glu746_Thr751delinsIle	p.E746_T751delinsI	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCAACa/aaAATa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191536	185191536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025113-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	235	372	0	ENST00000265026.3:c.2417G>T	p.Arg806Met	p.R806M	ENST00000265026	NM_004721.4	806	aGg/aTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044496	47044496	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025113-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	222	524	0	ENST00000329236.7:c.1759C>G	p.Gln587Glu	p.Q587E	ENST00000329236	NM_001204466.1	587	Caa/Gaa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634755	158634755	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025113-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	78	277	0	ENST00000263640.3:c.431T>G	p.Val144Gly	p.V144G	ENST00000263640	NM_001105.4	144	gTt/gGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913514		P-0048771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	128	439	0	ENST00000288135.5:c.2466T>A	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaA																																																																														
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	266	439	0	ENST00000288135.5:c.2466T>G	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaG																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4097336	4097336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	10	559	0	ENST00000262948.5:c.925G>A	p.Gly309Arg	p.G309R	ENST00000262948	NM_030662.3	309	Ggg/Agg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959201	2959201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	67	738	1	ENST00000396946.4:c.2315C>T	p.Ser772Leu	p.S772L	ENST00000396946	NM_032415.4	772	tCg/tTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356404	66356404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	41	368	0	ENST00000273854.3:c.1093A>G	p.Ile365Val	p.I365V	ENST00000273854	NM_004439.5	365	Atc/Gtc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593608	55593629	+	protein_altering_variant	In_Frame_Del	DEL	GGTTGTTGAGGAGATAAATGGA	GGTTGTTGAGGAGATAAATGGA	T			P-0048771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	305	409	0	ENST00000288135.5:c.1674_1695delinsT	p.Lys558_Gly565delinsAsn	p.K558_G565delinsN	ENST00000288135	NM_000222.2	558	aaGGTTGTTGAGGAGATAAATGGA/aaT																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495645	72495645	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0049012-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	55	199	0	ENST00000477973.2:c.423+2T>C		p.X141_splice	ENST00000477973	NM_012234.5	141																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	29	261	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	554	632	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0049424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	229	684	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	175	798	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0049424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	117	329	1				ENST00000310581	NM_198253.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151845334	151845334	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	211	507	0	ENST00000262189.6:c.13678C>T	p.Gln4560Ter	p.Q4560*	ENST00000262189	NM_170606.2	4560	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446346	49446346	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0049424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	198	492	0	ENST00000301067.7:c.1258+1G>A		p.X420_splice	ENST00000301067	NM_003482.3	420																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873995	151874001	+	frameshift_variant	Frame_Shift_Del	DEL	TTATCTT	TTATCTT	-			P-0049424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	162	355	0	ENST00000262189.6:c.8537_8543del	p.Lys2846MetfsTer15	p.K2846Mfs*15	ENST00000262189	NM_170606.2	2846	aAAGATAAt/at																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215239	123215239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	122	119	0	ENST00000218089.9:c.2785G>A	p.Glu929Lys	p.E929K	ENST00000218089	NM_001042749.1	929	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	153	202	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579468	7579472	+	frameshift_variant	Frame_Shift_Del	DEL	CACGG	CACGG	-			P-0049427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	350	640	0	ENST00000269305.4:c.215_219del	p.Pro72ArgfsTer75	p.P72Rfs*75	ENST00000269305	NM_001126112.2	72	cCCGTG/c																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	140	354	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876425	35876425	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	212	482	0	ENST00000303115.3:c.1217T>G	p.Leu406Arg	p.L406R	ENST00000303115	NM_002185.3	406	cTt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112176740	112176740	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	43	193	1	ENST00000257430.4:c.5453del	p.Asn1818IlefsTer45	p.N1818Ifs*45	ENST00000257430	NM_000038.5	1817	Aaa/aa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44879923	44879923	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0049429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	113	205	0	ENST00000377967.4:c.512T>G	p.Leu171Ter	p.L171*	ENST00000377967	NM_021140.2	171	tTa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	17	614	0	ENST00000269305.4:c.166G>A	p.Glu56Lys	p.E56K	ENST00000269305	NM_001126112.2	56	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289844	15289844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	334	778	0	ENST00000263388.2:c.3710G>A	p.Gly1237Asp	p.G1237D	ENST00000263388	NM_000435.2	1237	gGc/gAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960120	134960120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	161	434	0	ENST00000398015.3:c.2477G>T	p.Trp826Leu	p.W826L	ENST00000398015	NM_004441.4	826	tGg/tTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974758	21974779	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCCGGGCCGCGGCCGTGGCC	ACCCCGGGCCGCGGCCGTGGCC	-			P-0049430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	336	316	0	ENST00000304494.5:c.48_69del	p.Ala17GlyfsTer2	p.A17Gfs*2	ENST00000304494	NM_000077.4	16	ctGGCCACGGCCGCGGCCCGGGGT/ct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974758	21974779	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCCGGGCCGCGGCCGTGGCC	ACCCCGGGCCGCGGCCGTGGCC	-			P-0049430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	336	316	0	ENST00000304494.5:c.48_69del	p.Ala17GlyfsTer2	p.A17Gfs*2	ENST00000304494	NM_000077.4	16	ctGGCCACGGCCGCGGCCCGGGGT/ct																																																																														
ATRX	546	MSKCC	GRCh37	X	76907639	76907652	+	frameshift_variant	Frame_Shift_Del	DEL	CAATACGTTTTCGT	CAATACGTTTTCGT	-			P-0049430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	235	371	0	ENST00000373344.5:c.4509_4522del	p.Arg1503SerfsTer2	p.R1503Sfs*2	ENST00000373344	NM_000489.3	1503	agACGAAAACGTATTGct/agct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	125	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	143	463	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	128	380	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	121	159	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	158	385	9	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243858992	243858992	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	32	293	0	ENST00000263826.5:c.73A>G	p.Arg25Gly	p.R25G	ENST00000263826	NM_005465.4	25	Aga/Gga																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504590	103504590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	133	278	0	ENST00000355739.4:c.211C>T	p.Arg71Cys	p.R71C	ENST00000355739	NM_000123.3	71	Cgt/Tgt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39584468	39584468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	86	292	0	ENST00000262039.4:c.1133G>A	p.Arg378His	p.R378H	ENST00000262039	NM_002647.2	378	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332919	153332919	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs781123562		P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	93	261	0	ENST00000281708.4:c.37C>T	p.Arg13Ter	p.R13*	ENST00000281708	NM_033632.3	13	Cga/Tga																																																																														
MPL	4352	MSKCC	GRCh37	1	43806114	43806115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	69	532	2	ENST00000372470.3:c.911dup	p.Gln305AlafsTer6	p.Q305Afs*6	ENST00000372470	NM_005373.2	304	cag/cAag																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845537	63845537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	66	225	0	ENST00000279873.7:c.1276G>C	p.Glu426Gln	p.E426Q	ENST00000279873	NM_032199.2	426	Gag/Cag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136205	64136205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	203	887	2	ENST00000334205.4:c.1364C>T	p.Ala455Val	p.A455V	ENST00000334205	NM_003942.2	455	gCt/gTt																																																																														
PGR	5241	MSKCC	GRCh37	11	100912729	100912729	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	91	366	0	ENST00000325455.5:c.2593T>G	p.Ser865Ala	p.S865A	ENST00000325455	NM_001202474.3	865	Tcg/Gcg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195825	102195825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	96	332	0	ENST00000263464.3:c.585C>A	p.Tyr195Ter	p.Y195*	ENST00000263464	NM_001165.4	195	taC/taA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910860	32910860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	40	301	0	ENST00000380152.3:c.2368G>C	p.Glu790Gln	p.E790Q	ENST00000380152		790	Gaa/Caa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609679	81609679	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	113	466	0	ENST00000298171.2:c.1277T>A	p.Leu426Gln	p.L426Q	ENST00000298171	NM_000369.2	426	cTg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991880	72991880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	224	608	0	ENST00000268489.5:c.2165G>A	p.Gly722Asp	p.G722D	ENST00000268489	NM_006885.3	722	gGt/gAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033436	48033440	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAC	CTCAC	-			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	34	389	0	ENST00000234420.5:c.3740_3744del	p.Thr1247IlefsTer26	p.T1247Ifs*26	ENST00000234420	NM_000179.2	1247	aCTCAC/a																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022943	31022943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	62	465	0	ENST00000375687.4:c.2428G>A	p.Asp810Asn	p.D810N	ENST00000375687	NM_015338.5	810	Gac/Aac																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799550	72799550	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	70	473	0	ENST00000325599.8:c.1619A>C	p.Glu540Ala	p.E540A	ENST00000325599	NM_018130.2	540	gAg/gCg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133465	55133465	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	125	312	0	ENST00000257290.5:c.769G>C	p.Gly257Arg	p.G257R	ENST00000257290	NM_006206.4	257	Ggc/Cgc																																																																														
NBN	4683	MSKCC	GRCh37	8	90995054	90995054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	130	293	0	ENST00000265433.3:c.67G>C	p.Glu23Gln	p.E23Q	ENST00000265433	NM_002485.4	23	Gag/Cag																																																																														
MYC	4609	MSKCC	GRCh37	8	128748843	128748844	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	42	347	0	ENST00000377970.2:c.5dup	p.Asp2GlufsTer20	p.D2Efs*20	ENST00000377970	NM_002467.4	2	gat/gAat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994182	21994182	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	105	753	0	ENST00000361570.3:c.272T>A	p.Leu91Gln	p.L91Q	ENST00000361570	NM_058195.3	91	cTg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994182	21994182	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	105	753	0	ENST00000361570.3:c.272T>A	p.Leu91Gln	p.L91Q	ENST00000361570	NM_058195.3	91	cTg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	18	276	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484339	8484339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	30	264	0	ENST00000356435.5:c.3193G>T	p.Gly1065Cys	p.G1065C	ENST00000356435		1065	Ggc/Tgc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600471	10600471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	54	568	2	ENST00000171111.5:c.1384G>T	p.Gly462Trp	p.G462W	ENST00000171111	NM_203500.1	462	Ggg/Tgg																																																																														
STK11	6794	MSKCC	GRCh37	19	1220433	1220433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	73	873	1	ENST00000326873.7:c.526G>T	p.Asp176Tyr	p.D176Y	ENST00000326873	NM_000455.4	176	Gac/Tac																																																																														
RB1	5925	MSKCC	GRCh37	13	48878185	48878185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	50	210	0	ENST00000267163.4:c.137G>A	p.Arg46Lys	p.R46K	ENST00000267163	NM_000321.2	46	aGg/aAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136147	11136147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	52	652	0	ENST00000344626.4:c.3131A>G	p.Lys1044Arg	p.K1044R	ENST00000344626	NM_003072.3	1044	aAg/aGg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349964	15349964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	63	835	0	ENST00000263377.2:c.3688G>T	p.Ala1230Ser	p.A1230S	ENST00000263377	NM_058243.2	1230	Gcc/Tcc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47129605	47129605	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	26	258	0	ENST00000409792.3:c.5275C>T	p.Gln1759Ter	p.Q1759*	ENST00000409792	NM_014159.6	1759	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	45	323	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	39	412	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577594	7577594	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	101	508	0	ENST00000269305.4:c.687T>A	p.Cys229Ter	p.C229*	ENST00000269305	NM_001126112.2	229	tgT/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112175706	112175706	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	14	355	0	ENST00000257430.4:c.4415del	p.Val1472GlufsTer35	p.V1472Efs*35	ENST00000257430	NM_000038.5	1472	gTa/ga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119751	70119752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	172	450	0	ENST00000245479.2:c.754_755dup	p.Lys253Ter	p.K253*	ENST00000245479	NM_000346.3	251	-/CT																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851273	156851273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	111	698	0	ENST00000524377.1:c.2230C>T	p.Arg744Cys	p.R744C	ENST00000524377	NM_002529.3	744	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112174481	112174481	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	16	280	0	ENST00000257430.4:c.3190G>T	p.Glu1064Ter	p.E1064*	ENST00000257430	NM_000038.5	1064	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0049499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	303	561	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31385068	31385068	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	57	689	0	ENST00000328111.2:c.1453C>T	p.Arg485Ter	p.R485*	ENST00000328111	NM_006892.3	485	Cga/Tga																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127911968	127911968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	141	344	0	ENST00000373547.4:c.902C>T	p.Thr301Met	p.T301M	ENST00000373547	NM_002721.4	301	aCg/aTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405110	139405110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	348	789	0	ENST00000277541.6:c.2735G>A	p.Arg912Gln	p.R912Q	ENST00000277541	NM_017617.3	912	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0049500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	172	421	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346309	89346309	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	153	468	0	ENST00000301030.4:c.6641A>G	p.Asp2214Gly	p.D2214G	ENST00000301030	NM_001256183.1	2214	gAc/gGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0049504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	45	347	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0049504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	83	424	3	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0049504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	26	231	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	65	652	5	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	40	187	3	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845890	156845890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	108	578	6	ENST00000524377.1:c.1520G>A	p.Arg507His	p.R507H	ENST00000524377	NM_002529.3	507	cGc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713341	40713341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	42	530	2	ENST00000373198.4:c.4174C>T	p.Arg1392Cys	p.R1392C	ENST00000373198	NM_133170.3	1392	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112170705	112170705	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	37	354	3	ENST00000257430.4:c.1801G>T	p.Glu601Ter	p.E601*	ENST00000257430	NM_000038.5	601	Gag/Tag																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233582	69233582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	24	249	0	ENST00000462284.1:c.1447G>T	p.Val483Leu	p.V483L	ENST00000462284	NM_002392.5	483	Gta/Tta																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749110	43749110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	50	501	0	ENST00000382044.4:c.1696C>T	p.Pro566Ser	p.P566S	ENST00000382044	NM_001141980.1	566	Cct/Tct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921447	178921447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	35	360	1	ENST00000263967.3:c.929G>A	p.Arg310His	p.R310H	ENST00000263967	NM_006218.2	310	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294178	1294178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	58	660	3	ENST00000310581.5:c.823C>T	p.Pro275Ser	p.P275S	ENST00000310581	NM_198253.2	275	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	47	233	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0049505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	167	556	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	136	726	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	127	258	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																														
PARK2	0	MSKCC	GRCh37	6	161807896	161807896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	19	354	0	ENST00000366898.1:c.1097G>A	p.Arg366Gln	p.R366Q	ENST00000366898	NM_004562.2	366	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	22	236	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55979623	55979623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	108	428	0	ENST00000263923.4:c.824G>A	p.Arg275Gln	p.R275Q	ENST00000263923	NM_002253.2	275	cGa/cAa																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263979	104263979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	35	234	1	ENST00000369902.3:c.70C>T	p.Pro24Ser	p.P24S	ENST00000369902	NM_016169.3	24	Ccg/Tcg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326461	62326461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	63	946	1	ENST00000508582.2:c.3458C>T	p.Ser1153Leu	p.S1153L	ENST00000508582		1153	tCa/tTa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324051	31324051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	83	487	2	ENST00000412585.2:c.512G>A	p.Trp171Ter	p.W171*	ENST00000412585	NM_005514.6	171	tGg/tAg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523554	148523554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	37	237	0	ENST00000320356.2:c.899G>A	p.Cys300Tyr	p.C300Y	ENST00000320356	NM_004456.4	300	tGc/tAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	40	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820554	44820554	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	35	419	0	ENST00000377967.4:c.251del	p.Ile84ThrfsTer2	p.I84Tfs*2	ENST00000377967	NM_021140.2	84	aTc/ac																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	69	298	0	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa																																																																														
EP300	2033	MSKCC	GRCh37	22	41543946	41543946	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	410	505	0	ENST00000263253.7:c.2237A>G	p.Asn746Ser	p.N746S	ENST00000263253	NM_001429.3	746	aAc/aGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7573987	7574023	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCATTCAGCTCTCGGAACATCTCGAAGCGCTCAC	GCCTCATTCAGCTCTCGGAACATCTCGAAGCGCTCAC	-			P-0049543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	202	656	0	ENST00000269305.4:c.1004_1040del	p.Arg335ProfsTer23	p.R335Pfs*23	ENST00000269305	NM_001126112.2	335	cGTGAGCGCTTCGAGATGTTCCGAGAGCTGAATGAGGCc/cc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120028	70120028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	10	39	0	ENST00000245479.2:c.1030C>G	p.Pro344Ala	p.P344A	ENST00000245479	NM_000346.3	344	Cca/Gca																																																																														
KDR	3791	MSKCC	GRCh37	4	55955900	55955900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	65	405	0	ENST00000263923.4:c.3262G>A	p.Val1088Ile	p.V1088I	ENST00000263923	NM_002253.2	1088	Gtc/Atc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10305513	10305545	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCAGCGAGATGGCCGGGACGGCCAGTGTGGG	GGGCAGCGAGATGGCCGGGACGGCCAGTGTGGG	A			P-0049543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	289	385	0	ENST00000340748.4:c.31_63delinsT	p.Pro11Ter	p.P11*	ENST00000340748		11	CCCACACTGGCCGTCCCGGCCATCTCGCTGCCC/T																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	124	386	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	117	514	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	14	414	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	104	448	0	ENST00000304494.5:c.143C>A	p.Pro48Gln	p.P48Q	ENST00000304494	NM_000077.4	48	cCg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	104	448	0	ENST00000304494.5:c.143C>A	p.Pro48Gln	p.P48Q	ENST00000304494	NM_000077.4	48	cCg/cAg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375490	40375490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	31	616	0	ENST00000293328.3:c.460G>T	p.Val154Phe	p.V154F	ENST00000293328	NM_012448.3	154	Gtc/Ttc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971185	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CGGGCGCTGCCCATCATCATGAC	CGGGCGCTGCCCATCATCATGAC	-			P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	76	519	0	ENST00000304494.5:c.151_173del	p.Val51SerfsTer61	p.V51Sfs*61	ENST00000304494	NM_000077.4	51	GTCATGATGATGGGCAGCGCCCGa/a																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971185	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CGGGCGCTGCCCATCATCATGAC	CGGGCGCTGCCCATCATCATGAC	-			P-0049353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	76	519	0	ENST00000304494.5:c.151_173del	p.Val51SerfsTer61	p.V51Sfs*61	ENST00000304494	NM_000077.4	51	GTCATGATGATGGGCAGCGCCCGa/a																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128268598	128268598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	108	566	2	ENST00000265960.3:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000265960	NM_001006617.1	353	Cgc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202872	16202872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	150	453	0	ENST00000375759.3:c.580T>C	p.Phe194Leu	p.F194L	ENST00000375759	NM_015001.2	194	Ttt/Ctt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650948	37650948	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0049355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	103	276	1	ENST00000447079.4:c.2419+1G>C		p.X807_splice	ENST00000447079	NM_015083.1	807																																																																															
WHSC1	0	MSKCC	GRCh37	4	1902793	1902793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	148	552	4	ENST00000382891.5:c.412C>T	p.Leu138Phe	p.L138F	ENST00000382891	NM_133335.3	138	Ctc/Ttc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151900122	151900122	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	125	244	2	ENST00000262189.6:c.3989T>C	p.Leu1330Ser	p.L1330S	ENST00000262189	NM_170606.2	1330	tTa/tCa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133178	38133178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	237	399	3	ENST00000317025.8:c.4295G>T	p.Gly1432Val	p.G1432V	ENST00000317025	NM_023034.1	1432	gGa/gTa																																																																														
VHL	7428	MSKCC	GRCh37	3	10188215	10188215	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	66	380	0	ENST00000256474.2:c.358A>G	p.Arg120Gly	p.R120G	ENST00000256474	NM_000551.3	120	Aga/Gga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441262	52441262	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	35	465	0	ENST00000460680.1:c.508T>A	p.Phe170Ile	p.F170I	ENST00000460680	NM_004656.3	170	Ttt/Att																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52649366	52649372	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CTCAGCT	CTCAGCT	-			P-0049358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	16	378	0	ENST00000394830.3:c.1919_1924+1del		p.X640_splice	ENST00000394830	NM_018313.4	640																																																																															
TP53	7157	MSKCC	GRCh37	17	7578497	7578498	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0049358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	73	731	0	ENST00000269305.4:c.432_433delinsA	p.Leu145CysfsTer25	p.L145Cfs*25	ENST00000269305	NM_001126112.2	144	caGCtg/caAtg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	180	286	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	833	604	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245404	153245404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	328	405	0	ENST00000281708.4:c.1787C>T	p.Ser596Phe	p.S596F	ENST00000281708	NM_033632.3	596	tCt/tTt																																																																														
RB1	5925	MSKCC	GRCh37	13	48919244	48919244	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	53	68	0	ENST00000267163.4:c.409G>T	p.Glu137Ter	p.E137*	ENST00000267163	NM_000321.2	137	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	339	358	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872380	45872380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	492	711	1	ENST00000391945.4:c.131C>T	p.Ser44Leu	p.S44L	ENST00000391945	NM_000400.3	44	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445116	49445116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	421	676	0	ENST00000301067.7:c.2350G>A	p.Glu784Lys	p.E784K	ENST00000301067	NM_003482.3	784	Gag/Aag																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223202	2223202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	462	643	2	ENST00000326181.6:c.814C>T	p.Gln272Ter	p.Q272*	ENST00000326181	NM_032271.2	272	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445170	49445170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	481	777	0	ENST00000301067.7:c.2296G>A	p.Glu766Lys	p.E766K	ENST00000301067	NM_003482.3	766	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445140	49445140	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	463	733	0	ENST00000301067.7:c.2326G>T	p.Glu776Ter	p.E776*	ENST00000301067	NM_003482.3	776	Gag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262016	16262016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	334	575	0	ENST00000375759.3:c.9281C>T	p.Ser3094Phe	p.S3094F	ENST00000375759	NM_015001.2	3094	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424385	49424385	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	373	536	0	ENST00000301067.7:c.13838A>G	p.Lys4613Arg	p.K4613R	ENST00000301067	NM_003482.3	4613	aAg/aGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445971	49445971	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	572	833	0	ENST00000301067.7:c.1495G>C	p.Glu499Gln	p.E499Q	ENST00000301067	NM_003482.3	499	Gag/Cag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37667847	37667847	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	323	479	0	ENST00000447079.4:c.2733del	p.Glu911AspfsTer7	p.E911Dfs*7	ENST00000447079	NM_015083.1	911	gAa/ga																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44527592	44527592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	252	442	0	ENST00000291552.4:c.13C>G	p.Leu5Val	p.L5V	ENST00000291552	NM_006758.2	5	Ctg/Gtg																																																																														
EP300	2033	MSKCC	GRCh37	22	41568540	41568540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	266	329	0	ENST00000263253.7:c.4490G>T	p.Ser1497Ile	p.S1497I	ENST00000263253	NM_001429.3	1497	aGt/aTt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652025	36652025	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	257	778	0	ENST00000244741.5:c.147G>C	p.Trp49Cys	p.W49C	ENST00000244741	NM_000389.4	49	tgG/tgC																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652319	36652319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	165	565	0	ENST00000244741.5:c.441G>T	p.Met147Ile	p.M147I	ENST00000244741	NM_000389.4	147	atG/atT																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38272085	38272085	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	432	651	0	ENST00000425967.3:c.2133G>C	p.Gln711His	p.Q711H	ENST00000425967	NM_001174067.1	711	caG/caC																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168743	32168743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	202	661	0	ENST00000375023.3:c.4180C>T	p.Pro1394Ser	p.P1394S	ENST00000375023	NM_004557.3	1394	Cct/Tct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168689	32168689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	237	645	0	ENST00000375023.3:c.4234C>T	p.Leu1412Phe	p.L1412F	ENST00000375023	NM_004557.3	1412	Ctt/Ttt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168725	32168726	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0049366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	169	663	1	ENST00000375023.3:c.4197_4198delinsTT	p.Arg1400Cys	p.R1400C	ENST00000375023	NM_004557.3	1399	tcCCgc/tcTTgc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168620	32168627	+	missense_variant	Missense_Mutation	ONP	GAGGGTGG	GAGGGTGG	AAAGGTAA			P-0049366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	188	567	0	ENST00000375023.3:c.4296_4303delinsTTACCTTT	p.His1433_His1435delinsTyrLeuTyr	p.H1433_H1435delinsYLY	ENST00000375023	NM_004557.3	1432	gtCCACCCTCat/gtTTACCTTTat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168717	32168719	+	missense_variant	Missense_Mutation	ONP	GGG	GGG	AGA			P-0049366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	169	638	0	ENST00000375023.3:c.4204_4206delinsTCT	p.Pro1402Ser	p.P1402S	ENST00000375023	NM_004557.3	1402	CCC/TCT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	143	568	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	307	595	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	121	310	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922321	178922321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	129	324	0	ENST00000263967.3:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000263967	NM_006218.2	364	Gga/Aga																																																																														
RB1	5925	MSKCC	GRCh37	13	48953785	48953785	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	141	167	0	ENST00000267163.4:c.1388C>G	p.Ser463Ter	p.S463*	ENST00000267163	NM_000321.2	463	tCa/tGa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11101829	11101829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	337	535	0	ENST00000344626.4:c.1249C>T	p.Arg417Cys	p.R417C	ENST00000344626	NM_003072.3	417	Cgc/Tgc																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519933	66519933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	164	416	1	ENST00000358598.2:c.416C>T	p.Ser139Leu	p.S139L	ENST00000358598	NM_212471.2	139	tCa/tTa																																																																														
RB1	5925	MSKCC	GRCh37	13	49030434	49030434	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	234	348	0	ENST00000267163.4:c.1909C>T	p.Gln637Ter	p.Q637*	ENST00000267163	NM_000321.2	637	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	472	554	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	176	402	0	ENST00000281708.4:c.1394G>T	p.Arg465Leu	p.R465L	ENST00000281708	NM_033632.3	465	cGt/cTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857958	9857958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140536516		P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	229	481	0	ENST00000330684.3:c.3443C>T	p.Pro1148Leu	p.P1148L	ENST00000330684	NM_001134407.1	1148	cCg/cTg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760711	59760711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	266	345	0	ENST00000259008.2:c.3696G>C	p.Lys1232Asn	p.K1232N	ENST00000259008	NM_032043.2	1232	aaG/aaC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	543	335	0				ENST00000310581	NM_198253.2																																																																																
ZFHX3	463	MSKCC	GRCh37	16	72992753	72992753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	138	628	0	ENST00000268489.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000268489	NM_006885.3	431	tCa/tTa																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699358	117699358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	390	491	0	ENST00000369458.3:c.283G>A	p.Glu95Lys	p.E95K	ENST00000369458	NM_024626.3	95	Gaa/Aaa																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870322	155870322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	337	496	0	ENST00000368323.3:c.517G>A	p.Asp173Asn	p.D173N	ENST00000368323	NM_006912.5	173	Gat/Aat																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870355	155870355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	356	465	0	ENST00000368323.3:c.484G>A	p.Glu162Lys	p.E162K	ENST00000368323	NM_006912.5	162	Gag/Aag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982968	201982969	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	369	653	0	ENST00000359651.3:c.820dup	p.His274ProfsTer27	p.H274Pfs*27	ENST00000359651		273	acc/aCcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425895	49425895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	375	747	0	ENST00000301067.7:c.12593G>A	p.Arg4198Gln	p.R4198Q	ENST00000301067	NM_003482.3	4198	cGa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133245293	133245293	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	154	667	0	ENST00000320574.5:c.1954G>C	p.Ala652Pro	p.A652P	ENST00000320574	NM_006231.2	652	Gct/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578507	7578508	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1627	214	707	1	ENST00000269305.4:c.422_423delinsTT	p.Cys141Phe	p.C141F	ENST00000269305	NM_001126112.2	141	tGC/tTT																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760845	59760845	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	297	447	0	ENST00000259008.2:c.3562G>T	p.Glu1188Ter	p.E1188*	ENST00000259008	NM_032043.2	1188	Gag/Tag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761103	59761103	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	324	486	0	ENST00000259008.2:c.3304G>C	p.Asp1102His	p.D1102H	ENST00000259008	NM_032043.2	1102	Gac/Cac																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761139	59761139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	323	483	0	ENST00000259008.2:c.3268G>C	p.Glu1090Gln	p.E1090Q	ENST00000259008	NM_032043.2	1090	Gaa/Caa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211489	36211489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	68	432	0	ENST00000222270.7:c.1240C>T	p.Pro414Ser	p.P414S	ENST00000222270	NM_014727.1	414	Cct/Tct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220981	36220981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	298	527	0	ENST00000222270.7:c.5031C>G	p.Asp1677Glu	p.D1677E	ENST00000222270	NM_014727.1	1677	gaC/gaG																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918303	44918304	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	247	187	0	ENST00000377967.4:c.929_930del	p.Ser310TyrfsTer2	p.S310Yfs*2	ENST00000377967	NM_021140.2	310	TCt/t																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200052	123200062	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTGCTTGTA	ATTTGCTTGTA	-			P-0049367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	210	172	0	ENST00000218089.9:c.2127_2137del	p.Phe709LeufsTer15	p.F709Lfs*15	ENST00000218089	NM_001042749.1	708	ttATTTGCTTGTAat/ttat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	183	631	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0049368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	94	442	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459852	149459852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	58	784	1	ENST00000286301.3:c.355G>A	p.Glu119Lys	p.E119K	ENST00000286301	NM_005211.3	119	Gag/Aag																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130450	29130464	+	inframe_deletion	In_Frame_Del	DEL	TCCTCAGGTTCTTGG	TCCTCAGGTTCTTGG	-			P-0049368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	62	604	0	ENST00000328354.6:c.246_260del	p.Asp82_Glu86del	p.D82_E86del	ENST00000328354	NM_007194.3	82	gaCCAAGAACCTGAGGAg/gag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	44	413	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	39	578	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472523	88472523	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	74	568	0	ENST00000360948.2:c.2032C>T	p.Arg678Ter	p.R678*	ENST00000360948	NM_001012338.2	678	Cga/Tga																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45873491	45873491	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	36	508	0	ENST00000391945.4:c.6-1G>T		p.X2_splice	ENST00000391945	NM_000400.3	2																																																																															
GNAS	2778	MSKCC	GRCh37	20	57466908	57466910	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	14	191	0	ENST00000371085.3:c.136_138del	p.Leu46del	p.L46del	ENST00000371085	NM_000516.4	43	CTG/-																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126085	2126085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	60	582	0	ENST00000219476.3:c.2656G>T	p.Val886Leu	p.V886L	ENST00000219476	NM_000548.3	886	Gtg/Ttg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217867	2217867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	46	690	1	ENST00000398665.3:c.2641G>T	p.Val881Phe	p.V881F	ENST00000398665	NM_032482.2	881	Gtc/Ttc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239961	98239961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	42	429	0	ENST00000331920.6:c.1371G>T	p.Met457Ile	p.M457I	ENST00000331920	NM_000264.3	457	atG/atT																																																																														
TERT	7015	MSKCC	GRCh37	5	1279534	1279534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1386	75	685	0	ENST00000310581.5:c.2002G>A	p.Glu668Lys	p.E668K	ENST00000310581	NM_198253.2	668	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	72	196	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0049372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	218	543	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31504699	31504699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	181	390	1	ENST00000344624.3:c.1631G>A	p.Arg544His	p.R544H	ENST00000344624		544	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	17	339	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0049373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	38	290	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41545939	41545939	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	250	599	1	ENST00000263253.7:c.2554C>T	p.Gln852Ter	p.Q852*	ENST00000263253	NM_001429.3	852	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878785	151878785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	171	400	0	ENST00000262189.6:c.6160C>T	p.Gln2054Ter	p.Q2054*	ENST00000262189	NM_170606.2	2054	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878332	151878332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	204	503	0	ENST00000262189.6:c.6613C>T	p.His2205Tyr	p.H2205Y	ENST00000262189	NM_170606.2	2205	Cat/Tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445068	49445068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	179	527	0	ENST00000301067.7:c.2398C>T	p.Gln800Ter	p.Q800*	ENST00000301067	NM_003482.3	800	Cag/Tag																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140871	37140871	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	252	561	0	ENST00000373509.5:c.707T>C	p.Val236Ala	p.V236A	ENST00000373509	NM_002648.3	236	gTg/gCg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151896546	151896546	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0049373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	66	178	0	ENST00000262189.6:c.4093-2A>G		p.X1365_splice	ENST00000262189	NM_170606.2	1365																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915891	127915891	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0049373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	193	481	0	ENST00000373547.4:c.590C>G	p.Ser197Ter	p.S197*	ENST00000373547	NM_002721.4	197	tCa/tGa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590777	95590778	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0049375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	154	275	0	ENST00000343455.3:c.1131_1132del	p.Ile378GlnfsTer10	p.I378Qfs*10	ENST00000343455	NM_177438.2	377	gtAAtc/gttc																																																																														
NF2	4771	MSKCC	GRCh37	22	30069458	30069458	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	149	495	0	ENST00000338641.4:c.1323del	p.Glu442ArgfsTer13	p.E442Rfs*13	ENST00000338641	NM_000268.3	441	gcT/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	201	527	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	201	359	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927457	178927457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	103	331	1	ENST00000263967.3:c.1220G>T	p.Cys407Phe	p.C407F	ENST00000263967	NM_006218.2	407	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	28	298	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	29	273	0	ENST00000288602.6:c.1391G>T	p.Gly464Val	p.G464V	ENST00000288602	NM_004333.4	464	gGa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	16	442	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
AR	367	MSKCC	GRCh37	X	66765403	66765403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	49	277	0	ENST00000374690.3:c.415G>A	p.Val139Met	p.V139M	ENST00000374690	NM_000044.3	139	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0049379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	85	551	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PALB2	79728	MSKCC	GRCh37	16	23632794	23632794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	34	330	0	ENST00000261584.4:c.3002A>G	p.Lys1001Arg	p.K1001R	ENST00000261584	NM_024675.3	1001	aAa/aGa																																																																														
NF1	4763	MSKCC	GRCh37	17	29550479	29550479	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	21	196	0	ENST00000358273.4:c.1739A>G	p.Tyr580Cys	p.Y580C	ENST00000358273	NM_001042492.2	580	tAc/tGc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651895	36651895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	48	526	1	ENST00000244741.5:c.17G>A	p.Gly6Glu	p.G6E	ENST00000244741	NM_000389.4	6	gGg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	303	533	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	339	249	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573587	48573587	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	66	98	0	ENST00000342988.3:c.171A>C	p.Leu57Phe	p.L57F	ENST00000342988	NM_005359.5	57	ttA/ttC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584562	48584566	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAG	GCCAG	-			P-0049381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	31	391	0	ENST00000342988.3:c.736_740del	p.Pro246ThrfsTer16	p.P246Tfs*16	ENST00000342988	NM_005359.5	245	caGCCAGga/caga																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910647	29910647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1653	444	1297	1	ENST00000376809.5:c.187G>T	p.Asp63Tyr	p.D63Y	ENST00000376809	NM_002116.7	63	Gac/Tac																																																																														
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	137	493	0	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9862850	9862850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	49	498	0	ENST00000330684.3:c.2453C>T	p.Ala818Val	p.A818V	ENST00000330684	NM_001134407.1	818	gCg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0049382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	38	290	0				ENST00000310581	NM_198253.2																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78897289	78897289	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0049382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	50	533	0	ENST00000306801.3:c.2625-1G>C		p.X875_splice	ENST00000306801	NM_020761.2	875																																																																															
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	598	441	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79950724	79950725	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGCAGCGC			P-0049384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	15	91	1	ENST00000265081.6:c.181_189dup	p.Ala61_Pro63dup	p.A61_P63dup	ENST00000265081	NM_002439.4	61	gcc/gCCGCAGCGCcc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50816282	50816282	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	183	220	4	ENST00000398568.2:c.1726del	p.Met576TrpfsTer8	p.M576Wfs*8	ENST00000398568	NM_001042412.1	574	ccA/cc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	195	459	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	158	286	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	110	405	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	53	323	2	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112179260	112179260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	31	265	0	ENST00000257430.4:c.7969G>A	p.Val2657Ile	p.V2657I	ENST00000257430	NM_000038.5	2657	Gtt/Att																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	220	385	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	196	332	0	ENST00000275493.2:c.2500G>T	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ttg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783245	9783245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	41	433	1	ENST00000377346.4:c.2489G>A	p.Arg830His	p.R830H	ENST00000377346	NM_005026.3	830	cGt/cAt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040923	47040923	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	70	588	0	ENST00000329236.7:c.1219G>T	p.Glu407Ter	p.E407*	ENST00000329236	NM_001204466.1	407	Gag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108192121	108192121	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	103	325	0	ENST00000278616.4:c.6547del	p.Glu2183LysfsTer52	p.E2183Kfs*52	ENST00000278616	NM_000051.3	2182	ctG/ct																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761237	59761237	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	68	329	0	ENST00000259008.2:c.3170A>T	p.Asn1057Ile	p.N1057I	ENST00000259008	NM_032043.2	1057	aAt/aTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361201	66361201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	57	224	0	ENST00000273854.3:c.971C>A	p.Pro324His	p.P324H	ENST00000273854	NM_004439.5	324	cCt/cAt																																																																														
RHEB	6009	MSKCC	GRCh37	7	151188086	151188099	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCAATGAGGATTTC	TCAATGAGGATTTC	-			P-0049387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	54	185	0	ENST00000262187.5:c.54_67del	p.Lys19AspfsTer5	p.K19Dfs*5	ENST00000262187	NM_005614.3	18	ggGAAATCCTCATTGAcg/ggcg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	170	259	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88635803	88635803	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	52	236	0	ENST00000372037.3:c.28T>A	p.Leu10Ile	p.L10I	ENST00000372037	NM_004329.2	10	Tta/Ata																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	167	465	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0049404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	36	175	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245513	153245513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	153	293	0	ENST00000281708.4:c.1678G>C	p.Asp560His	p.D560H	ENST00000281708	NM_033632.3	560	Gat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	138	281	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112173730	112173730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	59	261	0	ENST00000257430.4:c.2442del	p.Phe814LeufsTer6	p.F814Lfs*6	ENST00000257430	NM_000038.5	813	aaT/aa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212056	5212056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	184	624	0	ENST00000357368.4:c.4975C>T	p.Arg1659Cys	p.R1659C	ENST00000357368	NM_002850.3	1659	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	380	569	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0049407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	175	301	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570332	87570332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	117	674	1	ENST00000277120.3:c.2072G>A	p.Arg691His	p.R691H	ENST00000277120		691	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	84	137	0	ENST00000257430.4:c.3910dup	p.Ile1304AsnfsTer11	p.I1304Nfs*11	ENST00000257430	NM_000038.5	1303	caa/cAaa																																																																														
APC	324	MSKCC	GRCh37	5	112173393	112173394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	125	220	0	ENST00000257430.4:c.2107dup	p.Ala703GlyfsTer3	p.A703Gfs*3	ENST00000257430	NM_000038.5	701	atg/atGg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932591	39932591	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148886271		P-0049407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	465	338	0	ENST00000378444.4:c.2008C>T	p.Pro670Ser	p.P670S	ENST00000378444	NM_001123385.1	670	Ccc/Tcc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061232	38061234	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0049408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	174	563	0	ENST00000250448.2:c.755_757del	p.Asn252del	p.N252del	ENST00000250448	NM_004496.3	252	aACAtg/atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	16	344	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	36	484	0	ENST00000269305.4:c.713G>C	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	tGt/tCt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2949769	2949769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	77	613	1	ENST00000396946.4:c.3175G>A	p.Gly1059Ser	p.G1059S	ENST00000396946	NM_032415.4	1059	Ggc/Agc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	110	621	1	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	162	568	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023775	27023775	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	51	330	0	ENST00000324856.7:c.883del	p.Leu295SerfsTer68	p.L295Sfs*68	ENST00000324856	NM_006015.4	294	aCc/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022458-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			95	342	577	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628567	187628567	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022458-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			460	292	503	1	ENST00000441802.2:c.2415G>T	p.Trp805Cys	p.W805C	ENST00000441802	NM_005245.3	805	tgG/tgT																																																																														
RB1	5925	MSKCC	GRCh37	13	49030409	49030410	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0022458-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			110	380	310	0	ENST00000267163.4:c.1887_1888del	p.Glu629AspfsTer23	p.E629Dfs*23	ENST00000267163	NM_000321.2	628	gcAGag/gcag																																																																														
CALR	811	MSKCC	GRCh37	19	13051656	13051656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022458-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			605	279	430	0	ENST00000316448.5:c.915C>G	p.Ile305Met	p.I305M	ENST00000316448	NM_004343.3	305	atC/atG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242478	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAAG	ATTAAGAGAAG	CA			P-0022458-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			526	169	404	2	ENST00000275493.2:c.2238_2248delinsCA	p.Glu746_Ala750delinsAspThr	p.E746_A750delinsDT	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGca/gaCAca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			136	369	200	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528105	157528105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	196	161	0	ENST00000346085.5:c.5830C>T	p.Arg1944Ter	p.R1944*	ENST00000346085	NM_020732.3	1944	Cga/Tga																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955187	17955187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	418	257	0	ENST00000458235.1:c.40C>T	p.Arg14Cys	p.R14C	ENST00000458235	NM_000215.3	14	Cgt/Tgt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555305	106555305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	118	146	0	ENST00000369096.4:c.2422C>A	p.Leu808Ile	p.L808I	ENST00000369096	NM_001198.3	808	Cta/Ata																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663587	117663587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	125	201	0	ENST00000368508.3:c.4645A>T	p.Ile1549Phe	p.I1549F	ENST00000368508	NM_002944.2	1549	Att/Ttt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227986	55227986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	94	125	0	ENST00000275493.2:c.1453G>A	p.Gly485Ser	p.G485S	ENST00000275493	NM_005228.3	485	Ggt/Agt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69136839	69136839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	111	107	0	ENST00000288368.4:c.4753C>T	p.Arg1585Trp	p.R1585W	ENST00000288368	NM_024870.2	1585	Cgg/Tgg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0047538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	652	609	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	376	616	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	253	499	0	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	407	755	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	26	243	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918553	44918553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	258	344	1	ENST00000377967.4:c.1036C>T	p.Gln346Ter	p.Q346*	ENST00000377967	NM_021140.2	346	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056214	27056214	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	677	518	1	ENST00000324856.7:c.1210C>T	p.Gln404Ter	p.Q404*	ENST00000324856	NM_006015.4	404	Caa/Taa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287398	38287398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	309	611	0	ENST00000425967.3:c.259C>T	p.Arg87Cys	p.R87C	ENST00000425967	NM_001174067.1	87	Cgc/Tgc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061593	38061622	+	inframe_deletion	In_Frame_Del	DEL	GGCCGCGTAGGGGCCCAGGCCATTCATGGA	GGCCGCGTAGGGGCCCAGGCCATTCATGGA	-			P-0047538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	109	281	0	ENST00000250448.2:c.367_396del	p.Ser123_Ala132del	p.S123_A132del	ENST00000250448	NM_004496.3	123	TCCATGAATGGCCTGGGCCCCTACGCGGCC/-																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255035	16255035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	192	287	0	ENST00000375759.3:c.2300G>C	p.Ser767Thr	p.S767T	ENST00000375759	NM_015001.2	767	aGc/aCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542273	187542273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	22	266	0	ENST00000441802.2:c.5467G>A	p.Asp1823Asn	p.D1823N	ENST00000441802	NM_005245.3	1823	Gat/Aat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	224	394	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	1945	520	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	40	492	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	267	563	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438317	110438322	+	inframe_deletion	In_Frame_Del	DEL	GTTGTT	GTTGTT	-			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	19	173	0	ENST00000375856.3:c.79_84del	p.Asn27_Asn28del	p.N27_N28del	ENST00000375856	NM_003749.2	27	AACAAC/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	275	508	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222924	5222924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	167	510	0	ENST00000357368.4:c.2879G>A	p.Gly960Glu	p.G960E	ENST00000357368	NM_002850.3	960	gGg/gAg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478902	56478902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	148	622	0	ENST00000267101.3:c.358A>G	p.Met120Val	p.M120V	ENST00000267101	NM_001982.3	120	Atg/Gtg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1953841	1953841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	63	678	0	ENST00000382891.5:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000382891	NM_133335.3	674	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37865697	37865697	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	1375	406	0	ENST00000269571.5:c.566C>G	p.Ser189Cys	p.S189C	ENST00000269571		189	tCt/tGt																																																																														
MYC	4609	MSKCC	GRCh37	8	128752830	128752830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	38	252	0	ENST00000377970.2:c.991C>G	p.Arg331Gly	p.R331G	ENST00000377970	NM_002467.4	331	Cgg/Ggg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	55	255	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108235838	108235838	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	44	233	0	ENST00000278616.4:c.8880G>C	p.Trp2960Cys	p.W2960C	ENST00000278616	NM_000051.3	2960	tgG/tgC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445575	49445575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	102	713	1	ENST00000301067.7:c.1891G>A	p.Glu631Lys	p.E631K	ENST00000301067	NM_003482.3	631	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952012	178952012	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	59	274	0	ENST00000263967.3:c.3067C>T	p.Arg1023Ter	p.R1023*	ENST00000263967	NM_006218.2	1023	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510733	120510733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	151	480	0	ENST00000256646.2:c.1231G>C	p.Asp411His	p.D411H	ENST00000256646	NM_024408.3	411	Gac/Cac																																																																														
AKT3	10000	MSKCC	GRCh37	1	243668617	243668617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	23	232	0	ENST00000263826.5:c.1374C>A	p.Asp458Glu	p.D458E	ENST00000263826	NM_005465.4	458	gaC/gaA																																																																														
SESN3	143686	MSKCC	GRCh37	11	94908677	94908677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	54	367	0	ENST00000536441.1:c.1377C>G	p.Phe459Leu	p.F459L	ENST00000536441	NM_144665.3	459	ttC/ttG																																																																														
ATM	472	MSKCC	GRCh37	11	108126960	108126960	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	74	384	0	ENST00000278616.4:c.2143C>G	p.Leu715Val	p.L715V	ENST00000278616	NM_000051.3	715	Ctt/Gtt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118350908	118350908	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	54	254	0	ENST00000534358.1:c.3589C>G	p.Leu1197Val	p.L1197V	ENST00000534358	NM_005933.3	1197	Cta/Gta																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914629	32914629	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	85	370	0	ENST00000380152.3:c.6137C>G	p.Ser2046Ter	p.S2046*	ENST00000380152		2046	tCa/tGa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914766	32914766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	87	299	0	ENST00000380152.3:c.6274C>G	p.Leu2092Val	p.L2092V	ENST00000380152		2092	Ctt/Gtt																																																																														
MGA	23269	MSKCC	GRCh37	15	42059296	42059296	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	35	287	0	ENST00000219905.7:c.9016C>T	p.Gln3006Ter	p.Q3006*	ENST00000219905	NM_001164273.1	3006	Cag/Tag																																																																														
AXIN1	8312	MSKCC	GRCh37	16	338160	338160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	83	610	1	ENST00000262320.3:c.2551G>A	p.Glu851Lys	p.E851K	ENST00000262320	NM_003502.3	851	Gag/Aag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47679235	47679235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	46	319	0	ENST00000347630.2:c.972C>A	p.Phe324Leu	p.F324L	ENST00000347630	NM_001007230.1	324	ttC/ttA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221766	36221766	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	205	641	0	ENST00000222270.7:c.5435C>G	p.Ser1812Ter	p.S1812*	ENST00000222270	NM_014727.1	1812	tCa/tGa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082291	16082291	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	350	757	0	ENST00000281043.3:c.105C>G	p.Phe35Leu	p.F35L	ENST00000281043	NM_005378.4	35	ttC/ttG																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965584	25965584	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	48	461	0	ENST00000435504.4:c.3622G>C	p.Gly1208Arg	p.G1208R	ENST00000435504		1208	Ggt/Cgt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368432	225368432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	114	254	0	ENST00000264414.4:c.1314G>T	p.Arg438Ser	p.R438S	ENST00000264414	NM_003590.4	438	agG/agT																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433336	138433336	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	30	335	0	ENST00000289153.2:c.1276C>G	p.Gln426Glu	p.Q426E	ENST00000289153	NM_006219.2	426	Cag/Gag																																																																														
PARK2	0	MSKCC	GRCh37	6	162206840	162206840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	92	328	0	ENST00000366898.1:c.835C>G	p.His279Asp	p.H279D	ENST00000366898	NM_004562.2	279	Cac/Gac																																																																														
HGF	3082	MSKCC	GRCh37	7	81335744	81335744	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	66	213	0	ENST00000222390.5:c.1617-1G>A		p.X539_splice	ENST00000222390	NM_000601.4	539																																																																															
HGF	3082	MSKCC	GRCh37	7	81358929	81358929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	118	308	0	ENST00000222390.5:c.1032C>G	p.Phe344Leu	p.F344L	ENST00000222390	NM_000601.4	344	ttC/ttG																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820542	44820569	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAATCTCTAATCTTAAAAGCTGAAGG	ATGAATCTCTAATCTTAAAAGCTGAAGG	-			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	96	154	0	ENST00000377967.4:c.240_267del	p.Tyr80Ter	p.Y80*	ENST00000377967	NM_021140.2	80	tATGAATCTCTAATCTTAAAAGCTGAAGGa/ta																																																																														
ATRX	546	MSKCC	GRCh37	X	76764088	76764088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	104	197	0	ENST00000373344.5:c.7220G>A	p.Arg2407Gln	p.R2407Q	ENST00000373344	NM_000489.3	2407	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0048713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	72	394	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0048713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	86	522	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106793	27106793	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	113	513	0	ENST00000324856.7:c.6404T>A	p.Ile2135Asn	p.I2135N	ENST00000324856	NM_006015.4	2135	aTt/aAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934190	39934190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146403660		P-0048713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	130	624	0	ENST00000378444.4:c.409G>A	p.Val137Ile	p.V137I	ENST00000378444	NM_001123385.1	137	Gtc/Atc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692980	89692980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	75	395	0	ENST00000371953.3:c.464A>G	p.Tyr155Cys	p.Y155C	ENST00000371953	NM_000314.4	155	tAt/tGt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	86	516	1	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650711	67650711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	111	488	0	ENST00000264010.4:c.1016G>C	p.Arg339Pro	p.R339P	ENST00000264010	NM_006565.3	339	cGg/cCg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757416	40757416	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	41	573	0	ENST00000373198.4:c.2882A>G	p.Tyr961Cys	p.Y961C	ENST00000373198	NM_133170.3	961	tAc/tGc																																																																														
CIC	23152	MSKCC	GRCh37	19	42798109	42798109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	99	551	0	ENST00000575354.2:c.4063T>C	p.Phe1355Leu	p.F1355L	ENST00000575354	NM_015125.3	1355	Ttc/Ctc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591132	67591149	+	inframe_deletion	In_Frame_Del	DEL	GACGAGAGACCAATACTT	GACGAGAGACCAATACTT	-			P-0048713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	25	265	0	ENST00000274335.5:c.1727_1744del	p.Thr576_Leu581del	p.T576_L581del	ENST00000274335		575	aaGACGAGAGACCAATACTTg/aag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371697	55371698	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	74	494	0	ENST00000297316.4:c.388dup	p.Gln130ProfsTer32	p.Q130Pfs*32	ENST00000297316	NM_022454.3	129	-/C																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0048874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	1488	475	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600393	10600393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	144	666	0	ENST00000171111.5:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000171111	NM_203500.1	488	Gag/Aag																																																																														
TET2	54790	MSKCC	GRCh37	4	106157474	106157474	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	66	287	0	ENST00000380013.4:c.2375C>G	p.Ser792Ter	p.S792*	ENST00000380013	NM_001127208.2	792	tCa/tGa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817814	3817814	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200424021		P-0048874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	139	565	1	ENST00000262367.5:c.3157C>T	p.Pro1053Ser	p.P1053S	ENST00000262367	NM_004380.2	1053	Cct/Tct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829714	72829714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	84	605	0	ENST00000268489.5:c.6867G>T	p.Trp2289Cys	p.W2289C	ENST00000268489	NM_006885.3	2289	tgG/tgT																																																																														
NBN	4683	MSKCC	GRCh37	8	90967571	90967571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	69	335	0	ENST00000265433.3:c.1337C>T	p.Ala446Val	p.A446V	ENST00000265433	NM_002485.4	446	gCt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	68	476	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	142	702	0	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																														
CASP8	841	MSKCC	GRCh37	2	202150031	202150031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	107	567	0	ENST00000358485.4:c.1472G>A	p.Arg491Gln	p.R491Q	ENST00000358485	NM_001080125.1	491	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	97	669	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	42	268	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	104	605	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430668	80430668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	50	487	0	ENST00000286548.4:c.340C>T	p.Arg114Ter	p.R114*	ENST00000286548	NM_002072.3	114	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133249847	133249847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	66	452	0	ENST00000320574.5:c.1376C>T	p.Ser459Phe	p.S459F	ENST00000320574	NM_006231.2	459	tCt/tTt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289660	33289660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	110	579	0	ENST00000374542.5:c.43G>A	p.Glu15Lys	p.E15K	ENST00000374542	NM_001141970.1	15	Gaa/Aaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70405915	70405915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	89	551	0	ENST00000373644.4:c.3429G>T	p.Lys1143Asn	p.K1143N	ENST00000373644	NM_030625.2	1143	aaG/aaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	97	541	0	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164385	47164385	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	47	308	1	ENST00000409792.3:c.1741G>T	p.Glu581Ter	p.E581*	ENST00000409792	NM_014159.6	581	Gaa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86633825	86633825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	47	296	0	ENST00000274376.6:c.934G>T	p.Glu312Ter	p.E312*	ENST00000274376	NM_002890.2	312	Gaa/Taa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215302	123215302	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	82	500	0	ENST00000218089.9:c.2848G>T	p.Glu950Ter	p.E950*	ENST00000218089	NM_001042749.1	950	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720871	89720871	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	47	329	0	ENST00000371953.3:c.1022T>G	p.Phe341Cys	p.F341C	ENST00000371953	NM_000314.4	341	tTt/tGt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	82	543	0	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																																																														
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	89	646	0	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641885	12641885	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	44	341	0	ENST00000251849.4:c.862+2T>C		p.X288_splice	ENST00000251849	NM_002880.3	288																																																																															
SMO	6608	MSKCC	GRCh37	7	128851930	128851930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	123	730	0	ENST00000249373.3:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000249373	NM_005631.4	668	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099325	27099325	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	94	557	0	ENST00000324856.7:c.3562C>T	p.Gln1188Ter	p.Q1188*	ENST00000324856	NM_006015.4	1188	Cag/Tag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86682712	86682712	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	24	232	0	ENST00000274376.6:c.2917G>T	p.Glu973Ter	p.E973*	ENST00000274376	NM_002890.2	973	Gaa/Taa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143094812	143094812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	47	412	0	ENST00000262992.4:c.1332G>T	p.Lys444Asn	p.K444N	ENST00000262992	NM_001101669.1	444	aaG/aaT																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858200	27858200	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	72	564	0	ENST00000359303.2:c.371A>G	p.Asp124Gly	p.D124G	ENST00000359303	NM_003535.2	124	gAc/gGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444297	49444297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	162	848	1	ENST00000301067.7:c.3074C>T	p.Ser1025Leu	p.S1025L	ENST00000301067	NM_003482.3	1025	tCg/tTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939558	76939558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	84	598	0	ENST00000373344.5:c.1190C>A	p.Ser397Tyr	p.S397Y	ENST00000373344	NM_000489.3	397	tCt/tAt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150022982	150022982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	91	533	0	ENST00000253339.5:c.281C>A	p.Ser94Tyr	p.S94Y	ENST00000253339		94	tCt/tAt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696405	47696405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	110	506	1	ENST00000347630.2:c.418G>T	p.Asp140Tyr	p.D140Y	ENST00000347630	NM_001007230.1	140	Gat/Tat																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942524	17942524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	89	716	0	ENST00000458235.1:c.2764G>A	p.Asp922Asn	p.D922N	ENST00000458235	NM_000215.3	922	Gat/Aat																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865440	57865440	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	126	705	0	ENST00000228682.2:c.2917A>C	p.Asn973His	p.N973H	ENST00000228682	NM_005269.2	973	Aat/Cat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906944	32906944	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs73169186		P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	54	478	0	ENST00000380152.3:c.1329G>T	p.Glu443Asp	p.E443D	ENST00000380152		443	gaG/gaT																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67575540	67575540	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	74	341	0	ENST00000274335.5:c.613G>T	p.Glu205Ter	p.E205*	ENST00000274335		205	Gaa/Taa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058509	72058509	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	76	434	0	ENST00000357731.5:c.931C>A	p.Pro311Thr	p.P311T	ENST00000357731	NM_173808.2	311	Cct/Act																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115279431	115279431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	66	482	0	ENST00000438362.2:c.586G>A	p.Val196Ile	p.V196I	ENST00000438362	NM_001242891.1	196	Gtt/Att																																																																														
CDC73	79577	MSKCC	GRCh37	1	193117054	193117054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	86	349	0	ENST00000367435.3:c.787C>G	p.Arg263Gly	p.R263G	ENST00000367435	NM_024529.4	263	Cgt/Ggt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132794	64132794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	95	600	0	ENST00000334205.4:c.928G>A	p.Ala310Thr	p.A310T	ENST00000334205	NM_003942.2	310	Gct/Act																																																																														
EED	8726	MSKCC	GRCh37	11	85967544	85967544	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	48	291	0	ENST00000263360.6:c.542A>C	p.Gln181Pro	p.Q181P	ENST00000263360	NM_003797.3	181	cAg/cCg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435161	18435161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	60	382	0	ENST00000266497.5:c.146G>A	p.Gly49Asp	p.G49D	ENST00000266497		49	gGc/gAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719966	18719966	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	63	435	0	ENST00000266497.5:c.3863T>G	p.Leu1288Ter	p.L1288*	ENST00000266497		1288	tTa/tGa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515243	103515243	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	69	383	0	ENST00000355739.4:c.1744A>C	p.Ser582Arg	p.S582R	ENST00000355739	NM_000123.3	582	Agt/Cgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830958	72830959	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	103	516	0	ENST00000268489.5:c.5622_5623del	p.Glu1875LysfsTer53	p.E1875Kfs*53	ENST00000268489	NM_006885.3	1874	ccCGaa/ccaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256953	41256953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	83	508	0	ENST00000357654.3:c.233G>T	p.Arg78Ile	p.R78I	ENST00000357654	NM_007294.3	78	aGa/aTa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39593454	39593454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	43	308	0	ENST00000262039.4:c.1219A>C	p.Asn407His	p.N407H	ENST00000262039	NM_002647.2	407	Aat/Cat																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46587803	46587803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	65	462	2	ENST00000263734.3:c.481G>T	p.Asp161Tyr	p.D161Y	ENST00000263734	NM_001430.4	161	Gac/Tac																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42839676	42839676	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	94	652	0	ENST00000398585.3:c.1563T>G	p.Ile521Met	p.I521M	ENST00000398585	NM_001135099.1	521	atT/atG																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799700	72799700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	50	588	0	ENST00000325599.8:c.1469C>A	p.Ser490Tyr	p.S490Y	ENST00000325599	NM_018130.2	490	tCt/tAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55592154	55592154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	101	567	0	ENST00000288135.5:c.1478C>T	p.Ala493Val	p.A493V	ENST00000288135	NM_000222.2	493	gCt/gTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467595	66467595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	47	393	0	ENST00000273854.3:c.674C>A	p.Ser225Tyr	p.S225Y	ENST00000273854	NM_004439.5	225	tCt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	832	683	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399155	139399155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	232	715	0	ENST00000277541.6:c.4988G>A	p.Arg1663Gln	p.R1663Q	ENST00000277541	NM_017617.3	1663	cGg/cAg																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945093	31945093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	176	523	0	ENST00000340398.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000340398	NM_001013699.2	3	cGa/cAa																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271600	26271600	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	93	336	0	ENST00000305910.3:c.13A>G	p.Lys5Glu	p.K5E	ENST00000305910	NM_003534.2	5	Aag/Gag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524967	8524967	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	115	353	0	ENST00000356435.5:c.637G>C	p.Ala213Pro	p.A213P	ENST00000356435		213	Gcg/Ccg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80343447	80343447	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	227	326	0	ENST00000286548.4:c.872A>G	p.Tyr291Cys	p.Y291C	ENST00000286548	NM_002072.3	291	tAc/tGc																																																																														
MPL	4352	MSKCC	GRCh37	1	43805071	43805071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	126	566	0	ENST00000372470.3:c.521G>A	p.Arg174Lys	p.R174K	ENST00000372470	NM_005373.2	174	aGa/aAa																																																																														
RFWD2	0	MSKCC	GRCh37	1	175916375	175916375	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	32	203	0	ENST00000367669.3:c.2134G>A	p.Glu712Lys	p.E712K	ENST00000367669	NM_022457.5	712	Gag/Aag																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206667325	206667325	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	115	570	0	ENST00000367120.3:c.2117+1G>A		p.X706_splice	ENST00000367120	NM_014002.3	706																																																																															
RET	5979	MSKCC	GRCh37	10	43612095	43612095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	69	455	1	ENST00000355710.3:c.2200G>A	p.Glu734Lys	p.E734K	ENST00000355710	NM_020975.4	734	Gaa/Aaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70405925	70405925	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	81	387	0	ENST00000373644.4:c.3439C>T	p.Gln1147Ter	p.Q1147*	ENST00000373644	NM_030625.2	1147	Cag/Tag																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316076	14316076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	77	212	0	ENST00000256196.4:c.349C>T	p.Arg117Cys	p.R117C	ENST00000256196		117	Cgt/Tgt																																																																														
WT1	7490	MSKCC	GRCh37	11	32417841	32417841	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	103	428	0	ENST00000332351.3:c.1211A>G	p.Lys404Arg	p.K404R	ENST00000332351	NM_024426.4	404	aAg/aGg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138885	64138886	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	79	523	2	ENST00000334205.4:c.2252_2253delinsTT	p.Pro751Leu	p.P751L	ENST00000334205	NM_003942.2	751	cCG/cTT																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201675	67201675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	126	622	0	ENST00000312629.5:c.976C>T	p.Pro326Ser	p.P326S	ENST00000312629	NM_003952.2	326	Ccc/Tcc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939807	71939807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	111	603	0	ENST00000298229.2:c.434C>T	p.Ser145Phe	p.S145F	ENST00000298229	NM_001567.3	145	tCt/tTt																																																																														
CBL	867	MSKCC	GRCh37	11	119142524	119142524	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	85	356	1	ENST00000264033.4:c.523C>T	p.Gln175Ter	p.Q175*	ENST00000264033	NM_005188.3	175	Cag/Tag																																																																														
CBL	867	MSKCC	GRCh37	11	119146792	119146792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	114	365	0	ENST00000264033.4:c.955C>T	p.Pro319Ser	p.P319S	ENST00000264033	NM_005188.3	319	Cct/Tct																																																																														
CBL	867	MSKCC	GRCh37	11	119149244	119149244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	127	432	0	ENST00000264033.4:c.1252T>A	p.Phe418Ile	p.F418I	ENST00000264033	NM_005188.3	418	Ttc/Atc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552630	18552630	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200787716		P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	55	390	0	ENST00000266497.5:c.2041C>T	p.Arg681Cys	p.R681C	ENST00000266497		681	Cgc/Tgc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650671	18650671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	33	306	0	ENST00000266497.5:c.2882G>A	p.Gly961Glu	p.G961E	ENST00000266497		961	gGa/gAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18747504	18747504	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	64	272	1	ENST00000266497.5:c.3964+1G>A		p.X1322_splice	ENST00000266497		1322																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245159	46245159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	52	398	0	ENST00000334344.6:c.3253C>T	p.Pro1085Ser	p.P1085S	ENST00000334344	NM_152641.2	1085	Cct/Tct																																																																														
MSI1	4440	MSKCC	GRCh37	12	120806044	120806044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	74	541	0	ENST00000257552.2:c.133G>A	p.Glu45Lys	p.E45K	ENST00000257552	NM_002442.3	45	Gag/Aag																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609704	28609704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	74	488	0	ENST00000241453.7:c.1525G>A	p.Gly509Arg	p.G509R	ENST00000241453	NM_004119.2	509	Ggg/Agg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012369	29012369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	80	410	0	ENST00000282397.4:c.502A>G	p.Thr168Ala	p.T168A	ENST00000282397	NM_002019.4	168	Act/Gct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913021	32913021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	69	364	0	ENST00000380152.3:c.4529C>T	p.Pro1510Leu	p.P1510L	ENST00000380152		1510	cCc/cTc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134628	41134628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	57	384	0	ENST00000379561.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000379561	NM_002015.3	334	Gaa/Aaa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335543	73335543	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	40	291	0	ENST00000377767.4:c.2628A>C	p.Glu876Asp	p.E876D	ENST00000377767	NM_014953.3	876	gaA/gaC																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675046	40675046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	122	527	1	ENST00000249776.8:c.10C>T	p.Pro4Ser	p.P4S	ENST00000249776	NM_033286.3	4	Ccc/Tcc																																																																														
MGA	23269	MSKCC	GRCh37	15	42059323	42059323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	36	375	0	ENST00000219905.7:c.9043G>A	p.Ala3015Thr	p.A3015T	ENST00000219905	NM_001164273.1	3015	Gca/Aca																																																																														
BLM	641	MSKCC	GRCh37	15	91312765	91312765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	59	346	0	ENST00000355112.3:c.2504C>A	p.Pro835His	p.P835H	ENST00000355112	NM_000057.2	835	cCc/cAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396431	396431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	84	557	0	ENST00000262320.3:c.595C>T	p.Pro199Ser	p.P199S	ENST00000262320	NM_003502.3	199	Ccc/Tcc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3644491	3644506	+	frameshift_variant	Frame_Shift_Del	DEL	AACTTGTGGGCGTAAA	AACTTGTGGGCGTAAA	-			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	75	674	0	ENST00000294008.3:c.2108_2123del	p.Leu703ProfsTer14	p.L703Pfs*14	ENST00000294008	NM_032444.2	703	cTTTACGCCCACAAGTTc/cc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857429	9857429	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	54	389	0	ENST00000330684.3:c.3972T>G	p.Phe1324Leu	p.F1324L	ENST00000330684	NM_001134407.1	1324	ttT/ttG																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858487	9858487	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	42	436	0	ENST00000330684.3:c.2914A>G	p.Lys972Glu	p.K972E	ENST00000330684	NM_001134407.1	972	Aag/Gag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341269	89341269	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	40	313	0	ENST00000301030.4:c.7666A>C	p.Thr2556Pro	p.T2556P	ENST00000301030	NM_001256183.1	2556	Acg/Ccg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	94	483	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16056664	16056664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	63	233	0	ENST00000268712.3:c.778A>G	p.Lys260Glu	p.K260E	ENST00000268712	NM_006311.3	260	Aaa/Gaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29652988	29652988	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	62	358	0	ENST00000358273.4:c.4986G>A	p.Trp1662Ter	p.W1662*	ENST00000358273	NM_001042492.2	1662	tgG/tgA																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435158	56435159	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	139	655	1	ENST00000407977.2:c.1978_1979delinsTT	p.Pro660Phe	p.P660F	ENST00000407977		660	CCc/TTc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761145	59761145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	141	419	0	ENST00000259008.2:c.3262C>T	p.His1088Tyr	p.H1088Y	ENST00000259008	NM_032043.2	1088	Cat/Tat																																																																														
CD79B	974	MSKCC	GRCh37	17	62007190	62007190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	142	589	0	ENST00000392795.3:c.492G>A	p.Met164Ile	p.M164I	ENST00000392795	NM_001039933.1	164	atG/atA																																																																														
CD79B	974	MSKCC	GRCh37	17	62009602	62009602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	149	587	1	ENST00000392795.3:c.20C>T	p.Ser7Phe	p.S7F	ENST00000392795	NM_001039933.1	7	tCt/tTt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532532	63532533	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	141	722	1	ENST00000307078.5:c.2046_2047delinsTT	p.Pro683Ser	p.P683S	ENST00000307078	NM_004655.3	682	gaCCct/gaTTct																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63545749	63545749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	111	328	1	ENST00000307078.5:c.845C>T	p.Pro282Leu	p.P282L	ENST00000307078	NM_004655.3	282	cCt/cTt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78765296	78765296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	84	328	0	ENST00000306801.3:c.877G>A	p.Asp293Asn	p.D293N	ENST00000306801	NM_020761.2	293	Gat/Aat																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896617	78896617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	76	579	0	ENST00000306801.3:c.2614C>T	p.His872Tyr	p.H872Y	ENST00000306801	NM_020761.2	872	Cac/Tac																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2180755	2180755	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	125	515	0	ENST00000398665.3:c.125G>A	p.Arg42Gln	p.R42Q	ENST00000398665	NM_032482.2	42	cGa/cAa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099207	4099207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	79	587	0	ENST00000262948.5:c.911C>T	p.Pro304Leu	p.P304L	ENST00000262948	NM_030662.3	304	cCc/cTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7141740	7141740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	121	554	1	ENST00000302850.5:c.2630C>T	p.Pro877Leu	p.P877L	ENST00000302850	NM_000208.2	877	cCc/cTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7142914	7142914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	126	612	0	ENST00000302850.5:c.2455C>T	p.Arg819Cys	p.R819C	ENST00000302850	NM_000208.2	819	Cgc/Tgc																																																																														
INSR	3643	MSKCC	GRCh37	19	7172349	7172349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	116	402	1	ENST00000302850.5:c.1220C>T	p.Ser407Phe	p.S407F	ENST00000302850	NM_000208.2	407	tCc/tTc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11018819	11018819	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	162	599	0	ENST00000327064.4:c.451C>T	p.Gln151Ter	p.Q151*	ENST00000327064	NM_199141.1	151	Cag/Tag																																																																														
CARM1	10498	MSKCC	GRCh37	19	11032084	11032084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	107	677	0	ENST00000327064.4:c.1649G>A	p.Arg550Gln	p.R550Q	ENST00000327064	NM_199141.1	550	cGg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276875	15276875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	97	560	0	ENST00000263388.2:c.5390C>T	p.Ser1797Phe	p.S1797F	ENST00000263388	NM_000435.2	1797	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210709	36210709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	113	596	0	ENST00000222270.7:c.460C>T	p.Arg154Cys	p.R154C	ENST00000222270	NM_014727.1	154	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212187	36212188	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	76	433	2	ENST00000222270.7:c.1938_1939delinsTT	p.Leu647Phe	p.L647F	ENST00000222270	NM_014727.1	646	ctCCtt/ctTTtt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213968	36213968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	137	715	0	ENST00000222270.7:c.2794C>A	p.Pro932Thr	p.P932T	ENST00000222270	NM_014727.1	932	Cct/Act																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224124	36224124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	82	532	1	ENST00000222270.7:c.6674C>T	p.Ser2225Phe	p.S2225F	ENST00000222270	NM_014727.1	2225	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224142	36224142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	105	618	1	ENST00000222270.7:c.6692C>T	p.Ser2231Phe	p.S2231F	ENST00000222270	NM_014727.1	2231	tCc/tTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919030	50919030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	104	714	0	ENST00000440232.2:c.2767C>T	p.Pro923Ser	p.P923S	ENST00000440232	NM_002691.3	923	Ccc/Tcc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25978944	25978944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	92	332	0	ENST00000435504.4:c.979C>T	p.Leu327Phe	p.L327F	ENST00000435504		327	Ctt/Ttt																																																																														
CENPA	1058	MSKCC	GRCh37	2	27015050	27015050	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	100	386	0	ENST00000335756.4:c.152T>C	p.Ile51Thr	p.I51T	ENST00000335756	NM_001809.3	51	aTc/aCc																																																																														
ALK	238	MSKCC	GRCh37	2	29519775	29519775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	110	501	0	ENST00000389048.3:c.1796C>T	p.Pro599Leu	p.P599L	ENST00000389048	NM_004304.4	599	cCt/cTt																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111921740	111921740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	71	278	0	ENST00000393256.3:c.529G>A	p.Asp177Asn	p.D177N	ENST00000393256	NM_006538.4	177	Gac/Aac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566827	212566827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	43	263	0	ENST00000342788.4:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000342788	NM_005235.2	452	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576877	212576877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	66	330	0	ENST00000342788.4:c.1022C>T	p.Ser341Leu	p.S341L	ENST00000342788	NM_005235.2	341	tCa/tTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812299	212812299	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	47	222	0	ENST00000342788.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000342788	NM_005235.2	93	Cag/Tag																																																																														
INHA	3623	MSKCC	GRCh37	2	220440144	220440144	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	166	644	0	ENST00000243786.2:c.997G>C	p.Gly333Arg	p.G333R	ENST00000243786	NM_002191.3	333	Ggg/Cgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9624933	9624933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	60	397	0	ENST00000353224.5:c.44C>T	p.Ser15Phe	p.S15F	ENST00000353224	NM_177990.2	15	tCc/tTc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37050356	37050356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	80	280	0	ENST00000231790.2:c.505C>T	p.Pro169Ser	p.P169S	ENST00000231790	NM_000249.3	169	Cca/Tca																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935108	49935108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	80	534	0	ENST00000296474.3:c.1891C>T	p.Arg631Trp	p.R631W	ENST00000296474	NM_002447.2	631	Cgg/Tgg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49939815	49939815	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	151	612	0	ENST00000296474.3:c.1228C>T	p.Pro410Ser	p.P410S	ENST00000296474	NM_002447.2	410	Ccg/Tcg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247418	71247418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	128	489	2	ENST00000318789.4:c.115G>A	p.Gly39Arg	p.G39R	ENST00000318789	NM_032682.5	39	Gga/Aga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670282	134670282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	113	386	1	ENST00000398015.3:c.193G>A	p.Glu65Lys	p.E65K	ENST00000398015	NM_004441.4	65	Gag/Aag																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683510	182683510	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	88	376	0	ENST00000292782.4:c.35T>C	p.Val12Ala	p.V12A	ENST00000292782	NM_020640.2	12	gTt/gCt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167830	185167830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	104	325	0	ENST00000265026.3:c.1153C>T	p.Leu385Phe	p.L385F	ENST00000265026	NM_004721.4	385	Ctt/Ttt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55136873	55136873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	26	327	0	ENST00000257290.5:c.1195G>A	p.Glu399Lys	p.E399K	ENST00000257290	NM_006206.4	399	Gaa/Aaa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139775	55139775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	117	513	0	ENST00000257290.5:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000257290	NM_006206.4	479	cGa/cAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141026	55141026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	66	288	1	ENST00000257290.5:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000257290	NM_006206.4	558	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	35	258	0				ENST00000310581	NM_198253.2																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31401661	31401661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	98	304	1	ENST00000344624.3:c.4003C>T	p.Pro1335Ser	p.P1335S	ENST00000344624		1335	Ccc/Tcc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873745	35873745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	37	244	0	ENST00000303115.3:c.701G>A	p.Ser234Asn	p.S234N	ENST00000303115	NM_002185.3	234	aGc/aAc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178545	56178545	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	33	230	0	ENST00000399503.3:c.3518A>G	p.His1173Arg	p.H1173R	ENST00000399503	NM_005921.1	1173	cAt/cGt																																																																														
NPM1	4869	MSKCC	GRCh37	5	170819792	170819792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	92	303	0	ENST00000296930.5:c.431C>T	p.Ala144Val	p.A144V	ENST00000296930	NM_002520.6	144	gCc/gTc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032003	26032004	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	56	381	1	ENST00000244661.2:c.285_286delinsAA	p.Ala96Thr	p.A96T	ENST00000244661	NM_003537.3	95	gaGGct/gaAAct																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679714	30679714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	124	535	0	ENST00000376406.3:c.2005C>T	p.Pro669Ser	p.P669S	ENST00000376406	NM_014641.2	669	Ccc/Tcc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322271	31322271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	85	299	0	ENST00000412585.2:c.1078C>T	p.Leu360Phe	p.L360F	ENST00000412585	NM_005514.6	360	Ctc/Ttc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554932	106554933	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	57	436	0	ENST00000369096.4:c.2049_2050delinsAA	p.Glu684Lys	p.E684K	ENST00000369096	NM_001198.3	683	cgGGag/cgAAag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958220	2958220	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	131	502	0	ENST00000396946.4:c.2512G>A	p.Ala838Thr	p.A838T	ENST00000396946	NM_032415.4	838	Gcc/Acc																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346284	152346284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	149	406	0	ENST00000359321.1:c.286C>T	p.Leu96Phe	p.L96F	ENST00000359321	NM_005431.1	96	Ctt/Ttt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285938	38285938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	24	399	0	ENST00000425967.3:c.473C>T	p.Ser158Leu	p.S158L	ENST00000425967	NM_001174067.1	158	tCg/tTg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859789	117859789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	50	271	0	ENST00000297338.2:c.1846C>T	p.Pro616Ser	p.P616S	ENST00000297338	NM_006265.2	616	Ccg/Tcg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319902	8319902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	62	264	0	ENST00000356435.5:c.5599G>A	p.Glu1867Lys	p.E1867K	ENST00000356435		1867	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331724	8331724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	333	397	0	ENST00000356435.5:c.5392C>T	p.Arg1798Ter	p.R1798*	ENST00000356435		1798	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485307	8485307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	67	341	0	ENST00000356435.5:c.3073C>T	p.His1025Tyr	p.H1025Y	ENST00000356435		1025	Cat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486041	8486041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	58	436	0	ENST00000356435.5:c.2776C>T	p.His926Tyr	p.H926Y	ENST00000356435		926	Cac/Tac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500808	8500808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	83	381	0	ENST00000356435.5:c.2074G>A	p.Asp692Asn	p.D692N	ENST00000356435		692	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518042	8518042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	44	371	0	ENST00000356435.5:c.1349G>A	p.Gly450Glu	p.G450E	ENST00000356435		450	gGa/gAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518223	8518223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	43	355	0	ENST00000356435.5:c.1168G>A	p.Glu390Lys	p.E390K	ENST00000356435		390	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524996	8524996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	79	318	0	ENST00000356435.5:c.608G>A	p.Gly203Glu	p.G203E	ENST00000356435		203	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	92	508	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	92	508	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87563452	87563452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	92	452	0	ENST00000277120.3:c.1840G>A	p.Glu614Lys	p.E614K	ENST00000277120		614	Gag/Aag																																																																														
SYK	6850	MSKCC	GRCh37	9	93626926	93626926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	61	353	0	ENST00000375746.1:c.773C>T	p.Pro258Leu	p.P258L	ENST00000375746	NM_001174167.1	258	cCa/cTa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	78	537	0	ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt																																																																														
MED12	9968	MSKCC	GRCh37	X	70351933	70351933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	142	288	0	ENST00000374080.3:c.4130C>T	p.Ser1377Phe	p.S1377F	ENST00000374080		1377	tCc/tTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938923	76938923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	145	246	0	ENST00000373344.5:c.1825C>T	p.Pro609Ser	p.P609S	ENST00000373344	NM_000489.3	609	Cca/Tca																																																																														
BTK	695	MSKCC	GRCh37	X	100611786	100611786	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	110	180	0	ENST00000308731.7:c.1335A>C	p.Glu445Asp	p.E445D	ENST00000308731	NM_000061.2	445	gaA/gaC																																																																														
FH	2271	MSKCC	GRCh37	1	241682895	241682895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	231	487	0	ENST00000366560.3:c.128G>T	p.Arg43Leu	p.R43L	ENST00000366560	NM_000143.3	43	cGa/cTa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347792	347793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0049354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	428	942	0	ENST00000262320.3:c.1712_1713dup	p.Gly572MetfsTer134	p.G572Mfs*134	ENST00000262320	NM_003502.3	571	-/AT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021258	31021258	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	72	596	0	ENST00000375687.4:c.1257A>T	p.Arg419Ser	p.R419S	ENST00000375687	NM_015338.5	419	agA/agT																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004720	150004720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	126	414	0	ENST00000253339.5:c.1505G>T	p.Arg502Leu	p.R502L	ENST00000253339		502	cGt/cTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68934287	68934287	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	78	115	0	ENST00000288368.4:c.353T>C	p.Ile118Thr	p.I118T	ENST00000288368	NM_024870.2	118	aTc/aCc																																																																														
NBN	4683	MSKCC	GRCh37	8	90967557	90967557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	150	185	0	ENST00000265433.3:c.1351C>A	p.Gln451Lys	p.Q451K	ENST00000265433	NM_002485.4	451	Cag/Aag																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	133	556	0	ENST00000330062.3:c.514A>T	p.Arg172Trp	p.R172W	ENST00000330062	NM_002168.2	172	Agg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023247	27023265	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAGCCGCCCGGCGGCGG	CGGAGCCGCCCGGCGGCGG	-			P-0049360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	12	169	0	ENST00000324856.7:c.356_374del	p.Glu119ValfsTer107	p.E119Vfs*107	ENST00000324856	NM_006015.4	118	aCGGAGCCGCCCGGCGGCGGc/ac																																																																														
JAK1	3716	MSKCC	GRCh37	1	65311315	65311315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	61	262	0	ENST00000342505.4:c.1996G>A	p.Val666Met	p.V666M	ENST00000342505	NM_002227.2	666	Gtg/Atg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61712954	61712954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	36	205	0	ENST00000401558.2:c.2457A>G	p.Ile819Met	p.I819M	ENST00000401558	NM_003400.3	819	atA/atG																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442075	52442075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	108	479	0	ENST00000460680.1:c.274G>A	p.Ala92Thr	p.A92T	ENST00000460680	NM_004656.3	92	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	40	622	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544161	18544161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	18	279	1	ENST00000266497.5:c.1978C>T	p.Leu660Phe	p.L660F	ENST00000266497		660	Ctt/Ttt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859568	151859568	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	45	401	1	ENST00000262189.6:c.11094del	p.Tyr3699MetfsTer6	p.Y3699Mfs*6	ENST00000262189	NM_170606.2	3698	acG/ac																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0049388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	93	426	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	219	519	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244155	153244156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	114	424	1	ENST00000281708.4:c.2001dup	p.Ser668GlufsTer26	p.S668Efs*26	ENST00000281708	NM_033632.3	667	-/G																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141035	55141035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	98	307	0	ENST00000257290.5:c.1681G>C	p.Val561Leu	p.V561L	ENST00000257290	NM_006206.4	561	Gtc/Ctc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011128	12011128	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	102	230	0	ENST00000353533.5:c.535G>T	p.Glu179Ter	p.E179*	ENST00000353533	NM_003010.3	179	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175313	112175314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	98	221	0	ENST00000257430.4:c.4025dup	p.Leu1342PhefsTer12	p.L1342Ffs*12	ENST00000257430	NM_000038.5	1341	agt/agTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	51	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	55	202	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	38	227	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	60	349	0	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119808	70119808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	227	557	0	ENST00000245479.2:c.811del	p.Arg271AlafsTer8	p.R271Afs*8	ENST00000245479	NM_000346.3	270	ttC/tt																																																																														
APC	324	MSKCC	GRCh37	5	112173801	112173801	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	58	232	0	ENST00000257430.4:c.2510C>G	p.Ser837Ter	p.S837*	ENST00000257430	NM_000038.5	837	tCa/tGa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604674	48604674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	78	312	1	ENST00000342988.3:c.1496G>A	p.Cys499Tyr	p.C499Y	ENST00000342988	NM_005359.5	499	tGc/tAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	205	490	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	79	212	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685271	89685278	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTTTTGGA	TTTTTGGA	-			P-0049413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	45	87	0	ENST00000371953.3:c.168_175del	p.Leu57LysfsTer3	p.L57Kfs*3	ENST00000371953	NM_000314.4	56	TTTTTGGAt/t																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435007	110435007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	117	619	2	ENST00000375856.3:c.3394G>A	p.Gly1132Ser	p.G1132S	ENST00000375856	NM_003749.2	1132	Ggc/Agc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220591	1220600	+	frameshift_variant	Frame_Shift_Del	DEL	GTTCGCGGCG	GTTCGCGGCG	-			P-0049413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	259	699	0	ENST00000326873.7:c.610_619del	p.Phe204ThrfsTer80	p.F204Tfs*80	ENST00000326873	NM_000455.4	203	ccGTTCGCGGCG/cc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226559	2226570	+	inframe_deletion	In_Frame_Del	DEL	CTGAGCTCCCCG	CTGAGCTCCCCG	-			P-0049413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	276	783	0	ENST00000398665.3:c.4046_4057del	p.Ser1349_Ser1352del	p.S1349_S1352del	ENST00000398665	NM_032482.2	1347	CTGAGCTCCCCG/-																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137521932	137522029	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTACTTTAAAAACATAATTTAAGAAACTATCAAAAAAGGTTCAAGTTAACTTTTTAGTGTATATAAAAAAATTAAATACATTACCAAGGACTTGGG	TTCTACTTTAAAAACATAATTTAAGAAACTATCAAAAAAGGTTCAAGTTAACTTTTTAGTGTATATAAAAAAATTAAATACATTACCAAGGACTTGGG	-			P-0049413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	32	40	0	ENST00000367739.4:c.850_861+86del		p.X284_splice	ENST00000367739	NM_000416.2	284																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	426	476	3	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	372	762	2	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936393		P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	30	248	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112151251	112151252	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	96	309	0	ENST00000257430.4:c.896_897del	p.Ser299CysfsTer27	p.S299Cfs*27	ENST00000257430	NM_000038.5	298	caCTct/cact																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134884875	134884875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	369	449	0	ENST00000398015.3:c.1651G>A	p.Val551Met	p.V551M	ENST00000398015	NM_004441.4	551	Gtg/Atg																																																																														
KDR	3791	MSKCC	GRCh37	4	55962508	55962512	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTA	TTCTA	-			P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	132	339	0	ENST00000263923.4:c.2615-3_2616del		p.X872_splice	ENST00000263923	NM_002253.2	872																																																																															
APC	324	MSKCC	GRCh37	5	112164640	112164640	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	129	243	0	ENST00000257430.4:c.1715del	p.Leu572Ter	p.L572*	ENST00000257430	NM_000038.5	572	Ttg/tg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922891	39922891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	205	237	1	ENST00000378444.4:c.3817G>A	p.Glu1273Lys	p.E1273K	ENST00000378444	NM_001123385.1	1273	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	67	616	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0049438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	64	461	0	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268760	41268760	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	36	453	0	ENST00000349496.5:c.998A>T	p.Tyr333Phe	p.Y333F	ENST00000349496	NM_001904.3	333	tAc/tTc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40476846	40476846	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0049438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	28	509	1	ENST00000264657.5:c.1483A>T	p.Lys495Ter	p.K495*	ENST00000264657	NM_139276.2	495	Aag/Tag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279961	18279961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	35	718	1	ENST00000222254.8:c.2044C>T	p.Pro682Ser	p.P682S	ENST00000222254	NM_005027.3	682	Ccc/Tcc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060846	38060864	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCAAGCCGTGTGCC	GGGTGCCAAGCCGTGTGCC	-			P-0010315-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			851	237	588	0	ENST00000250448.2:c.1125_1143del	p.Ala376ThrfsTer7	p.A376Tfs*7	ENST00000250448	NM_004496.3	375	ccGGCACACGGCTTGGCACCC/cc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117711004	117711004	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010315-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			168	64	202	0	ENST00000368508.3:c.1268T>C	p.Val423Ala	p.V423A	ENST00000368508	NM_002944.2	423	gTc/gCc																																																																														
TERT	7015	MSKCC	GRCh37	5	1280287	1280287	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147521473		P-0010315-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			682	257	668	0	ENST00000310581.5:c.1936C>T	p.Arg646Cys	p.R646C	ENST00000310581	NM_198253.2	646	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420968	49421397	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGGCAGGAGAAGGTGCCAAGGGGGAAGGGGGCGGGGAGGGTTCTTCAGGAGGTGGGGCCGAGAGCTGTCGCACATCCAGATTGGAGACATTGTAGGTATAGCTGTGCTGAGTGGGTGGCTCTGGGGCGGGGCTCTCCTGTAGGAGGGTGCCCTGTATCATTAGTGCCAGCTCCTCATCTAACTAGCTCCCTCCTTCCCCTCACCCATATGCCACCCTCCCAAAAGGCCTCCACATTCTTTGCCCTAGACAGCCTCTTTTTTCTTTTCTTTTCTTTTTTTTTTGAGACACAGTCTTGCTCTGTTGCCCAGGCTGGATCCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGGGATTCTCATGCCTCAGCCTTTCGAGTAGCTGGGATTACAGGCACGCACCATCACGCCTGGCT	ACTGGCAGGAGAAGGTGCCAAGGGGGAAGGGGGCGGGGAGGGTTCTTCAGGAGGTGGGGCCGAGAGCTGTCGCACATCCAGATTGGAGACATTGTAGGTATAGCTGTGCTGAGTGGGTGGCTCTGGGGCGGGGCTCTCCTGTAGGAGGGTGCCCTGTATCATTAGTGCCAGCTCCTCATCTAACTAGCTCCCTCCTTCCCCTCACCCATATGCCACCCTCCCAAAAGGCCTCCACATTCTTTGCCCTAGACAGCCTCTTTTTTCTTTTCTTTTCTTTTTTTTTTGAGACACAGTCTTGCTCTGTTGCCCAGGCTGGATCCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGGGATTCTCATGCCTCAGCCTTTCGAGTAGCTGGGATTACAGGCACGCACCATCACGCCTGGCT	-			P-0010315-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			197	294	382	0	ENST00000301067.7:c.14643+189_14781del		p.X4881_splice	ENST00000301067	NM_003482.3	4881																																																																															
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0021477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			26	266	298	0	ENST00000558401.1:c.3G>A	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atA																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0021477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	150	230	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107138	27107142	+	frameshift_variant	Frame_Shift_Del	DEL	AGTTT	AGTTT	-			P-0021477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			14	306	361	0	ENST00000324856.7:c.6750_6754del	p.Glu2250AspfsTer26	p.E2250Dfs*26	ENST00000324856	NM_006015.4	2250	gAGTTT/g																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11095966	11095966	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			361	358	459	0	ENST00000344626.4:c.240T>G	p.His80Gln	p.H80Q	ENST00000344626	NM_003072.3	80	caT/caG																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938435	44938435	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			19	285	156	0	ENST00000377967.4:c.2983G>T	p.Glu995Ter	p.E995*	ENST00000377967	NM_021140.2	995	Gaa/Taa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910432	50910432	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0024088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	100	567	0	ENST00000440232.2:c.1686+1G>T		p.X562_splice	ENST00000440232	NM_002691.3	562																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125514027	125514027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	118	382	0	ENST00000428830.2:c.965G>A	p.Arg322His	p.R322H	ENST00000428830	NM_001114121.2	322	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577053	7577057	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCT	AGGCT	-			P-0024088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			36	387	498	0	ENST00000269305.4:c.881_885del	p.Glu294AlafsTer10	p.E294Afs*10	ENST00000269305	NM_001126112.2	294	gAGCCT/g																																																																														
CALR	811	MSKCC	GRCh37	19	13049535	13049535	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	297	465	0	ENST00000316448.5:c.43del	p.Ala15ProfsTer83	p.A15Pfs*83	ENST00000316448	NM_004343.3	14	ctG/ct																																																																														
NF2	4771	MSKCC	GRCh37	22	30050694	30050694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	185	272	0	ENST00000338641.4:c.496G>C	p.Glu166Gln	p.E166Q	ENST00000338641	NM_000268.3	166	Gag/Cag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93973635	93973635	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0024088-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			96	118	276	0	ENST00000369303.4:c.1743-2A>T		p.X581_splice	ENST00000369303	NM_004440.3	581																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0027527-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			811	104	634	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0034751-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			648	253	689	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739064	40739064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034751-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			760	90	645	2	ENST00000373198.4:c.3220G>A	p.Val1074Ile	p.V1074I	ENST00000373198	NM_133170.3	1074	Gtt/Att																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864658	68864658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034751-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	42	312	0	ENST00000288368.4:c.29G>A	p.Arg10His	p.R10H	ENST00000288368	NM_024870.2	10	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1266640	1266640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034751-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	82	498	1	ENST00000310581.5:c.2593C>T	p.Arg865Cys	p.R865C	ENST00000310581	NM_198253.2	865	Cgt/Tgt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950049	44950049	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034751-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			198	148	270	0	ENST00000377967.4:c.3818T>G	p.Leu1273Arg	p.L1273R	ENST00000377967	NM_021140.2	1273	cTt/cGt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257265	16257265	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034751-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	72	559	0	ENST00000375759.3:c.4530T>A	p.Asp1510Glu	p.D1510E	ENST00000375759	NM_015001.2	1510	gaT/gaA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425078	49425078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034751-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			923	139	937	0	ENST00000301067.7:c.13410G>C	p.Lys4470Asn	p.K4470N	ENST00000301067	NM_003482.3	4470	aaG/aaC																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557447	21557447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034751-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	204	566	0	ENST00000382592.4:c.2398G>A	p.Asp800Asn	p.D800N	ENST00000382592	NM_014572.2	800	Gat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266534	55266534	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034751-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			630	75	543	0	ENST00000275493.2:c.2826T>A	p.Asp942Glu	p.D942E	ENST00000275493	NM_005228.3	942	gaT/gaA																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38135870	38135870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034751-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			907	151	572	0	ENST00000317025.8:c.3821A>G	p.His1274Arg	p.H1274R	ENST00000317025	NM_023034.1	1274	cAc/cGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0043625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			97	124	438	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647077	23647077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			111	82	624	0	ENST00000261584.4:c.790C>T	p.His264Tyr	p.H264Y	ENST00000261584	NM_024675.3	264	Cac/Tac																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987179	36987193	+	inframe_deletion	In_Frame_Del	DEL	CATGCCGCTCATGTT	CATGCCGCTCATGTT	-			P-0043625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			61	19	656	0	ENST00000354822.5:c.496_510del	p.Asn166_Met170del	p.N166_M170del	ENST00000354822	NM_001079668.2	166	AACATGAGCGGCATG/-																																																																														
MDM2	4193	MSKCC	GRCh37	12	69222648	69222668	+	inframe_deletion	In_Frame_Del	DEL	AATAAGGGAGATATGTTGTGA	AATAAGGGAGATATGTTGTGA	-			P-0043625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			68	43	537	1	ENST00000462284.1:c.623_643del	p.Ile208_Glu214del	p.I208_E214del	ENST00000462284	NM_002392.5	207	gtAATAAGGGAGATATGTTGTGAa/gta																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892221	9892221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			116	76	559	2	ENST00000330684.3:c.2269G>T	p.Ala757Ser	p.A757S	ENST00000330684	NM_001134407.1	757	Gcc/Tcc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59821927	59821927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			100	67	380	0	ENST00000259008.2:c.2123G>T	p.Trp708Leu	p.W708L	ENST00000259008	NM_032043.2	708	tGg/tTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599904	10599904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			33	91	735	0	ENST00000171111.5:c.1672G>C	p.Gly558Arg	p.G558R	ENST00000171111	NM_203500.1	558	Ggg/Cgg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285857	198285857	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			84	55	410	2	ENST00000335508.6:c.196G>T	p.Asp66Tyr	p.D66Y	ENST00000335508	NM_012433.2	66	Gat/Tat																																																																														
ETV1	2115	MSKCC	GRCh37	7	13940450	13940450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			98	61	352	1	ENST00000405192.2:c.1056G>T	p.Trp352Cys	p.W352C	ENST00000405192	NM_001163147.1	352	tgG/tgT																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729544	41729544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			90	66	620	0	ENST00000242208.4:c.985A>G	p.Ser329Gly	p.S329G	ENST00000242208	NM_002192.2	329	Agt/Ggt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970978	21970986	+	inframe_deletion	In_Frame_Del	DEL	GCGACATCG	GCGACATCG	-			P-0043625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			22	28	625	0	ENST00000304494.5:c.372_380del	p.Asp125_Ala127del	p.D125_A127del	ENST00000304494	NM_000077.4	124	cgCGATGTCGCa/cga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970978	21970986	+	inframe_deletion	In_Frame_Del	DEL	GCGACATCG	GCGACATCG	-			P-0043625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			22	28	625	0	ENST00000304494.5:c.372_380del	p.Asp125_Ala127del	p.D125_A127del	ENST00000304494	NM_000077.4	124	cgCGATGTCGCa/cga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045137	47045137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			19	76	321	0	ENST00000329236.7:c.2144G>T	p.Arg715Leu	p.R715L	ENST00000329236	NM_001204466.1	715	cGa/cTa																																																																														
VHL	7428	MSKCC	GRCh37	3	10191506	10191506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	243	536	1	ENST00000256474.2:c.499C>T	p.Arg167Trp	p.R167W	ENST00000256474	NM_000551.3	167	Cgg/Tgg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1962801	1962801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	140	533	1	ENST00000382891.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000382891	NM_133335.3	1099	Gag/Aag																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30133035	30133035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	246	476	0	ENST00000331968.5:c.566C>T	p.Ala189Val	p.A189V	ENST00000331968	NM_002742.2	189	gCa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0046175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	62	431	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197306	26197306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	98	690	0	ENST00000356476.2:c.173C>T	p.Ser58Leu	p.S58L	ENST00000356476		58	tCg/tTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295181	1295181	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	81	335	0				ENST00000310581	NM_198253.2																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48584552	48584552	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	264	593	0	ENST00000342988.3:c.725C>G	p.Ser242Ter	p.S242*	ENST00000342988	NM_005359.5	242	tCa/tGa																																																																														
MET	4233	MSKCC	GRCh37	7	116412022	116412022	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	1139	767	0	ENST00000397752.3:c.3007T>A	p.Tyr1003Asn	p.Y1003N	ENST00000397752	NM_000245.2	1003	Tac/Aac																																																																														
TSC1	7248	MSKCC	GRCh37	9	135804196	135804196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	269	645	1	ENST00000298552.3:c.64C>T	p.Arg22Trp	p.R22W	ENST00000298552	NM_001162426.1	22	Cgg/Tgg																																																																														
YAP1	10413	MSKCC	GRCh37	11	101985064	101985064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			754	2655	873	1	ENST00000282441.5:c.511G>A	p.Val171Ile	p.V171I	ENST00000282441	NM_001130145.2	171	Gta/Ata																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811697	102811697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	201	695	0	ENST00000307046.8:c.487G>A	p.Glu163Lys	p.E163K	ENST00000307046	NM_001111285.1	163	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577608	7577609	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	163	557	2	ENST00000269305.4:c.673-1_673delinsTT		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
CDK12	51755	MSKCC	GRCh37	17	37672024	37672024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			563	65	549	0	ENST00000447079.4:c.2809C>G	p.Gln937Glu	p.Q937E	ENST00000447079	NM_015083.1	937	Caa/Gaa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47684640	47684640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			668	49	605	0	ENST00000347630.2:c.809C>A	p.Ala270Asp	p.A270D	ENST00000347630	NM_001007230.1	270	gCt/gAt																																																																														
VHL	7428	MSKCC	GRCh37	3	10183559	10183559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	318	892	0	ENST00000256474.2:c.28G>C	p.Glu10Gln	p.E10Q	ENST00000256474	NM_000551.3	10	Gag/Cag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251937	153251955	+	frameshift_variant	Frame_Shift_Del	DEL	TGATGTATGCACTTTTCCA	TGATGTATGCACTTTTCCA	-			P-0047191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	89	547	0	ENST00000281708.4:c.1051_1069del	p.Trp351AspfsTer20	p.W351Dfs*20	ENST00000281708	NM_033632.3	351	TGGAAAAGTGCATACATCAga/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	83	332	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	218	521	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	25	259	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119765	70119766	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	151	409	0	ENST00000245479.2:c.770_771dupGC	p.Pro258AlafsTer22	p.P258Afs*22	ENST00000245479	NM_000346.3	256	ggg/ggGCg																																																																														
KDR	3791	MSKCC	GRCh37	4	55955593	55955593	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	52	376	1	ENST00000263923.4:c.3352C>T	p.Arg1118Ter	p.R1118*	ENST00000263923	NM_002253.2	1118	Cga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467877	66467877	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	10	300	0	ENST00000273854.3:c.392A>T	p.Lys131Ile	p.K131I	ENST00000273854	NM_004439.5	131	aAa/aTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411944	63411948	+	frameshift_variant	Frame_Shift_Del	DEL	TATTC	TATTC	-			P-0047416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	123	604	0	ENST00000330258.3:c.1219_1223del	p.Glu407SerfsTer32	p.E407Sfs*32	ENST00000330258	NM_152424.3	407	GAATAt/t																																																																														
TERT	7015	MSKCC	GRCh37	5	1295247	1295247	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0047840-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	15	271	0				ENST00000310581	NM_198253.2																																																																																
GATA3	2625	MSKCC	GRCh37	10	8097788	8097790	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0047840-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	62	543	0	ENST00000346208.3:c.170_172del	p.Gly57_Asn58delinsAsp	p.G57_N58delinsD	ENST00000346208		57	gGCAac/gac																																																																														
RAB35	11021	MSKCC	GRCh37	12	120546250	120546250	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047840-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	41	448	0	ENST00000229340.5:c.74T>C	p.Leu25Pro	p.L25P	ENST00000229340	NM_006861.6	25	cTg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	119	485	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849852	156849852	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	155	504	0	ENST00000524377.1:c.2108A>C	p.Lys703Thr	p.K703T	ENST00000524377	NM_002529.3	703	aAg/aCg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			782	114	658	0	ENST00000327367.4:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000327367	NM_005902.3	93	cGa/cAa																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263992	104263992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	85	364	0	ENST00000369902.3:c.83C>T	p.Ser28Leu	p.S28L	ENST00000369902	NM_016169.3	28	tCg/tTg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001578	150001578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	42	284	0	ENST00000253339.5:c.2026G>C	p.Asp676His	p.D676H	ENST00000253339		676	Gat/Cat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832810	3832810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	97	457	0	ENST00000262367.5:c.1448G>A	p.Arg483Gln	p.R483Q	ENST00000262367	NM_004380.2	483	cGa/cAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678589	88678589	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201426743		P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	56	348	2	ENST00000360948.2:c.947G>A	p.Arg316His	p.R316H	ENST00000360948	NM_001012338.2	316	cGc/cAc																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733594	85733594	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	69	389	0	ENST00000370580.1:c.418G>T	p.Glu140Ter	p.E140*	ENST00000370580	NM_003921.4	140	Gag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11297908	11297908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	56	417	0	ENST00000361445.4:c.2200C>G	p.Leu734Val	p.L734V	ENST00000361445	NM_004958.3	734	Ctc/Gtc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134471	41134471	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	70	402	0	ENST00000379561.5:c.1157C>G	p.Ser386Ter	p.S386*	ENST00000379561	NM_002015.3	386	tCa/tGa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060869	38060869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			996	122	669	0	ENST00000250448.2:c.1120C>T	p.His374Tyr	p.H374Y	ENST00000250448	NM_004496.3	374	Cac/Tac																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68758609	68758609	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	220	291	0	ENST00000487270.1:c.765G>C	p.Leu255Phe	p.L255F	ENST00000487270	NM_133509.3	255	ttG/ttC																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457623	67457623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			662	120	599	1	ENST00000327367.4:c.433G>A	p.Glu145Lys	p.E145K	ENST00000327367	NM_005902.3	145	Gag/Aag																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257883	19257883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	395	837	0	ENST00000162023.5:c.503C>G	p.Ser168Cys	p.S168C	ENST00000162023		168	tCt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921500	178921500	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	57	369	0	ENST00000263967.3:c.982T>C	p.Trp328Arg	p.W328R	ENST00000263967	NM_006218.2	328	Tgg/Cgg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46738445	46738445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			716	74	404	0	ENST00000371975.4:c.1346C>A	p.Ser449Tyr	p.S449Y	ENST00000371975	NM_003579.3	449	tCc/tAc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66782908	66782908	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	40	390	0	ENST00000307102.5:c.1137C>G	p.Ile379Met	p.I379M	ENST00000307102	NM_002755.3	379	atC/atG																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793173	33793173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	51	267	0	ENST00000498907.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000498907	NM_004364.3	50	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219761	36219761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1515	130	690	0	ENST00000222270.7:c.4658C>T	p.Ser1553Leu	p.S1553L	ENST00000222270	NM_014727.1	1553	tCa/tTa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52705266	52705266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	70	409	1	ENST00000322088.6:c.148G>A	p.Glu50Lys	p.E50K	ENST00000322088	NM_014225.5	50	Gag/Aag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99185056	99185056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	56	280	0	ENST00000074304.5:c.2458G>A	p.Glu820Lys	p.E820K	ENST00000074304	NM_001134224.1	820	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597398	52597398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	74	420	0	ENST00000394830.3:c.3912G>T	p.Met1304Ile	p.M1304I	ENST00000394830	NM_018313.4	1304	atG/atT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937012	178937012	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048167-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	50	371	0	ENST00000263967.3:c.1693C>G	p.Leu565Val	p.L565V	ENST00000263967	NM_006218.2	565	Cta/Gta																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048225-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			358	210	443	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048225-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			238	90	359	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0048225-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			426	231	584	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048225-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			372	111	395	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425119	49425119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048225-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			532	156	725	0	ENST00000301067.7:c.13369G>T	p.Glu4457Ter	p.E4457*	ENST00000301067	NM_003482.3	4457	Gaa/Taa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988553	36988553	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048225-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			641	168	706	0	ENST00000354822.5:c.100A>T	p.Ser34Cys	p.S34C	ENST00000354822	NM_001079668.2	34	Agt/Tgt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482843	67482927	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CCCCAAGCATCCGCTGTTCCAGTGTGTCTTAGAGACATCAAGTATGGTAGGGGAGGGCAGGCTTGGGGAAAATGGCCATGCAGGA	CCCCAAGCATCCGCTGTTCCAGTGTGTCTTAGAGACATCAAGTATGGTAGGGGAGGGCAGGCTTGGGGAAAATGGCCATGCAGGA	-			P-0048225-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			423	94	515	0	ENST00000327367.4:c.1247_*53del		p.*416*	ENST00000327367	NM_005902.3	416																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45860773	45860773	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048225-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			475	140	610	0	ENST00000391945.4:c.1336C>G	p.Pro446Ala	p.P446A	ENST00000391945	NM_000400.3	446	Ccc/Gcc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945154	44945154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048225-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			145	117	247	0	ENST00000377967.4:c.3478G>C	p.Gly1160Arg	p.G1160R	ENST00000377967	NM_021140.2	1160	Ggc/Cgc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179163	123179187	+	frameshift_variant	Frame_Shift_Del	DEL	TACAGGATTGTCTGACTCACAAGTC	TACAGGATTGTCTGACTCACAAGTC	-			P-0048225-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			153	80	241	0	ENST00000218089.9:c.612_636del	p.Thr205GlufsTer12	p.T205Efs*12	ENST00000218089	NM_001042749.1	204	ctTACAGGATTGTCTGACTCACAAGTC/ct																																																																														
KIT	3815	MSKCC	GRCh37	4	55599338	55599338	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048280-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	346	546	0	ENST00000288135.5:c.2464A>T	p.Asn822Tyr	p.N822Y	ENST00000288135	NM_000222.2	822	Aat/Tat																																																																														
RB1	5925	MSKCC	GRCh37	13	48955580	48955580	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048280-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			44	119	340	0	ENST00000267163.4:c.1695+1G>A		p.X565_splice	ENST00000267163	NM_000321.2	565																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115262321	115262322	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048280-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			91	305	498	0	ENST00000438362.2:c.2232_2233del	p.Phe746ProfsTer10	p.F746Pfs*10	ENST00000438362	NM_001242891.1	744	ctCTtt/cttt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352676	118352676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048280-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			86	784	537	0	ENST00000534358.1:c.3881C>A	p.Ser1294Ter	p.S1294*	ENST00000534358	NM_005933.3	1294	tCa/tAa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0048295-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	516	687	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40789994	40789994	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048295-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	70	426	0	ENST00000373198.4:c.2737G>A	p.Glu913Lys	p.E913K	ENST00000373198	NM_133170.3	913	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048295-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	160	366	0				ENST00000310581	NM_198253.2																																																																																
CEBPA	1050	MSKCC	GRCh37	19	33793212	33793212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048295-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	132	135	1	ENST00000498907.2:c.109G>A	p.Ala37Thr	p.A37T	ENST00000498907	NM_004364.3	37	Gcg/Acg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492308	56492308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048295-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			929	494	471	0	ENST00000267101.3:c.2641G>A	p.Glu881Lys	p.E881K	ENST00000267101	NM_001982.3	881	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	12	321	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	78	898	1	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	12	76	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-																																																																														
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	17	329	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524624	103524624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	12	423	2	ENST00000355739.4:c.2755C>T	p.Arg919Trp	p.R919W	ENST00000355739	NM_000123.3	919	Cgg/Tgg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	41	616	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933619	39933619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	130	390	0	ENST00000378444.4:c.980G>A	p.Gly327Glu	p.G327E	ENST00000378444	NM_001123385.1	327	gGg/gAg																																																																														
RECQL	5965	MSKCC	GRCh37	12	21626569	21626569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199740132		P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	10	398	0	ENST00000421138.2:c.1363C>T	p.Arg455Cys	p.R455C	ENST00000421138		455	Cgt/Tgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164393	47164393	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0048384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	13	349	0	ENST00000409792.3:c.1733T>G	p.Leu578Ter	p.L578*	ENST00000409792	NM_014159.6	578	tTa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	54	579	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507423	8507423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			90	12	230	0	ENST00000356435.5:c.1555C>A	p.Pro519Thr	p.P519T	ENST00000356435		519	Cca/Aca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974809	21974809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			50	11	162	0	ENST00000304494.5:c.18del	p.Ser7AlafsTer19	p.S7Afs*19	ENST00000304494	NM_000077.4	6	ggG/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974809	21974809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			50	11	162	0	ENST00000304494.5:c.18del	p.Ser7AlafsTer19	p.S7Afs*19	ENST00000304494	NM_000077.4	6	ggG/gg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	17	569	0	ENST00000344626.4:c.3484G>A	p.Gly1162Ser	p.G1162S	ENST00000344626	NM_003072.3	1162	Ggc/Agc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740806	58740806	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	30	380	0	ENST00000305921.3:c.1711C>T	p.Gln571Ter	p.Q571*	ENST00000305921	NM_003620.3	571	Cag/Tag																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281849	49281849	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			160	13	496	0	ENST00000282018.3:c.896G>T	p.Cys299Phe	p.C299F	ENST00000282018	NM_020377.2	299	tGc/tTc																																																																														
MGA	23269	MSKCC	GRCh37	15	41991265	41991265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	17	345	0	ENST00000219905.7:c.2096A>C	p.Tyr699Ser	p.Y699S	ENST00000219905	NM_001164273.1	699	tAc/tCc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200172	138200172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			203	22	392	0	ENST00000237289.4:c.1590G>T	p.Arg530Ser	p.R530S	ENST00000237289	NM_001270507.1	530	agG/agT																																																																														
PARK2	0	MSKCC	GRCh37	6	161969972	161969972	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	30	507	0	ENST00000366898.1:c.997C>G	p.Pro333Ala	p.P333A	ENST00000366898	NM_004562.2	333	Ccc/Gcc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426493	47426493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	26	596	0	ENST00000377045.4:c.836G>T	p.Arg279Leu	p.R279L	ENST00000377045	NM_001654.4	279	cGc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	97	320	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	77	162	0				ENST00000310581	NM_198253.2																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81971483	81971483	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	35	429	0	ENST00000359376.3:c.3173A>T	p.Lys1058Met	p.K1058M	ENST00000359376	NM_002661.3	1058	aAg/aTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530099	212530099	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	36	270	0	ENST00000342788.4:c.1820A>G	p.Tyr607Cys	p.Y607C	ENST00000342788	NM_005235.2	607	tAt/tGt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149513316	149513316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	85	385	0	ENST00000261799.4:c.767G>A	p.Arg256Gln	p.R256Q	ENST00000261799	NM_002609.3	256	cGg/cAg																																																																														
RB1	5925	MSKCC	GRCh37	13	49027133	49027133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	43	204	0	ENST00000267163.4:c.1700C>T	p.Ser567Leu	p.S567L	ENST00000267163	NM_000321.2	567	tCa/tTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133799	55133799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	17	337	0	ENST00000257290.5:c.1012G>C	p.Glu338Gln	p.E338Q	ENST00000257290	NM_006206.4	338	Gag/Cag																																																																														
ATM	472	MSKCC	GRCh37	11	108165741	108165741	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	13	313	0	ENST00000278616.4:c.4864G>T	p.Glu1622Ter	p.E1622*	ENST00000278616	NM_000051.3	1622	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	431671	431671	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	17	390	0	ENST00000399788.2:c.2338C>G	p.Leu780Val	p.L780V	ENST00000399788	NM_001042603.1	780	Ctc/Gtc																																																																														
MGA	23269	MSKCC	GRCh37	15	41961518	41961518	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	22	345	0	ENST00000219905.7:c.426G>A	p.Trp142Ter	p.W142*	ENST00000219905	NM_001164273.1	142	tgG/tgA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929161	32929161	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	19	375	0	ENST00000380152.3:c.7171G>T	p.Glu2391Ter	p.E2391*	ENST00000380152		2391	Gaa/Taa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47705502	47705502	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	15	278	0	ENST00000233146.2:c.2302G>C	p.Glu768Gln	p.E768Q	ENST00000233146	NM_000251.2	768	Gaa/Caa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5070023	5070023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	20	201	0	ENST00000381652.3:c.1612C>T	p.His538Tyr	p.H538Y	ENST00000381652	NM_004972.3	538	Cac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	81	396	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	82	159	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	203	538	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
FYN	2534	MSKCC	GRCh37	6	111982953	111982953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	142	500	0	ENST00000368678.4:c.1594G>A	p.Glu532Lys	p.E532K	ENST00000368678		532	Gaa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11181374	11181374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	174	584	0	ENST00000361445.4:c.6862G>C	p.Glu2288Gln	p.E2288Q	ENST00000361445	NM_004958.3	2288	Gag/Cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099380	27099380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	60	463	0	ENST00000324856.7:c.3617C>T	p.Thr1206Ile	p.T1206I	ENST00000324856	NM_006015.4	1206	aCt/aTt																																																																														
STK40	83931	MSKCC	GRCh37	1	36823966	36823966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	81	532	0	ENST00000373129.3:c.216G>C	p.Glu72Asp	p.E72D	ENST00000373129	NM_032017.1	72	gaG/gaC																																																																														
STK40	83931	MSKCC	GRCh37	1	36824358	36824358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	109	484	0	ENST00000373129.3:c.178G>C	p.Asp60His	p.D60H	ENST00000373129	NM_032017.1	60	Gat/Cat																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458564	120458564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	163	509	0	ENST00000256646.2:c.6781G>A	p.Glu2261Lys	p.E2261K	ENST00000256646	NM_024408.3	2261	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799225	88799225	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	80	516	0	ENST00000360948.2:c.160T>C	p.Phe54Leu	p.F54L	ENST00000360948	NM_001012338.2	54	Ttc/Ctc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788660	3788660	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	116	314	0	ENST00000262367.5:c.4294T>C	p.Ser1432Pro	p.S1432P	ENST00000262367	NM_004380.2	1432	Tct/Cct																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244907	41244907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	130	395	0	ENST00000357654.3:c.2641G>A	p.Glu881Lys	p.E881K	ENST00000357654	NM_007294.3	881	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7166342	7166342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	100	596	2	ENST00000302850.5:c.1684G>A	p.Asp562Asn	p.D562N	ENST00000302850	NM_000208.2	562	Gac/Aac																																																																														
INSR	3643	MSKCC	GRCh37	19	7267787	7267787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	143	503	2	ENST00000302850.5:c.221G>T	p.Arg74Leu	p.R74L	ENST00000302850	NM_000208.2	74	cGa/cTa																																																																														
INSR	3643	MSKCC	GRCh37	19	7267794	7267794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	134	474	0	ENST00000302850.5:c.214G>T	p.Asp72Tyr	p.D72Y	ENST00000302850	NM_000208.2	72	Gat/Tat																																																																														
INSR	3643	MSKCC	GRCh37	19	7267839	7267839	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	119	420	1	ENST00000302850.5:c.169G>T	p.Glu57Ter	p.E57*	ENST00000302850	NM_000208.2	57	Gaa/Taa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39240651	39240651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	86	245	0	ENST00000402219.2:c.2117G>C	p.Arg706Thr	p.R706T	ENST00000402219	NM_005633.3	706	aGa/aCa																																																																														
CRKL	1399	MSKCC	GRCh37	22	21272340	21272340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	231	605	0	ENST00000354336.3:c.118G>A	p.Asp40Asn	p.D40N	ENST00000354336	NM_005207.3	40	Gat/Aat																																																																														
ATR	545	MSKCC	GRCh37	3	142254004	142254004	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	96	269	0	ENST00000350721.4:c.3863C>G	p.Ser1288Cys	p.S1288C	ENST00000350721	NM_001184.3	1288	tCt/tGt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522558	67522558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	63	157	0	ENST00000274335.5:c.55G>A	p.Glu19Lys	p.E19K	ENST00000274335		19	Gaa/Aaa																																																																														
NPM1	4869	MSKCC	GRCh37	5	170818365	170818365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	54	216	0	ENST00000296930.5:c.195G>A	p.Met65Ile	p.M65I	ENST00000296930	NM_002520.6	65	atG/atA																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163263	32163263	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	290	773	0	ENST00000375023.3:c.5963C>G	p.Pro1988Arg	p.P1988R	ENST00000375023	NM_004557.3	1988	cCa/cGa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2977567	2977567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	211	557	1	ENST00000396946.4:c.1117G>A	p.Glu373Lys	p.E373K	ENST00000396946	NM_032415.4	373	Gag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116340130	116340130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	51	207	0	ENST00000397752.3:c.992G>A	p.Arg331Lys	p.R331K	ENST00000397752	NM_000245.2	331	aGa/aAa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740422	145740422	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1395	186	806	0	ENST00000428558.2:c.1518del	p.Gly507AlafsTer51	p.G507Afs*51	ENST00000428558	NM_004260.3	506	gcC/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	60	470	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47129622	47129623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	133	210	0	ENST00000409792.3:c.5257dup	p.Thr1753AsnfsTer36	p.T1753Nfs*36	ENST00000409792	NM_014159.6	1753	acc/aAcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048868-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	105	328	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273962	10273962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048868-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	69	663	0	ENST00000330684.3:c.307G>A	p.Asp103Asn	p.D103N	ENST00000330684	NM_001134407.1	103	Gac/Aac																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797221	135797221	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048868-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	40	197	0	ENST00000298552.3:c.648del	p.Phe216LeufsTer8	p.F216Lfs*8	ENST00000298552	NM_001162426.1	216	ttT/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	375	313	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
EP300	2033	MSKCC	GRCh37	22	41533773	41533773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	23	348	2	ENST00000263253.7:c.1739G>A	p.Arg580Gln	p.R580Q	ENST00000263253	NM_001429.3	580	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827961	40827961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	94	392	0	ENST00000373198.4:c.2467G>A	p.Ala823Thr	p.A823T	ENST00000373198	NM_133170.3	823	Gcc/Acc																																																																														
ATM	472	MSKCC	GRCh37	11	108106557	108106557	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	105	232	0	ENST00000278616.4:c.492G>A	p.Trp164Ter	p.W164*	ENST00000278616	NM_000051.3	164	tgG/tgA																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866707	37866707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	360	546	0	ENST00000269571.5:c.874G>T	p.Gly292Cys	p.G292C	ENST00000269571		292	Ggc/Tgc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221950	1221950	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	548	714	0	ENST00000326873.7:c.865del	p.Met289CysfsTer47	p.M289Cfs*47	ENST00000326873	NM_000455.4	289	Atg/tg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513276	106513276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	152	242	0	ENST00000359195.3:c.2180C>T	p.Ala727Val	p.A727V	ENST00000359195	NM_002649.2	727	gCc/gTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002922	69002922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	67	228	2	ENST00000288368.4:c.2222C>T	p.Ala741Val	p.A741V	ENST00000288368	NM_024870.2	741	gCc/gTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411673	63411673	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	299	638	0	ENST00000330258.3:c.1494C>G	p.Asp498Glu	p.D498E	ENST00000330258	NM_152424.3	498	gaC/gaG																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0049027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	122	328	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	114	401	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	36	220	0	ENST00000281708.4:c.1436G>T	p.Arg479Leu	p.R479L	ENST00000281708	NM_033632.3	479	cGa/cTa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626736	12626736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149580968		P-0049027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	79	399	0	ENST00000251849.4:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000251849	NM_002880.3	518	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032035	10032035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	83	479	0	ENST00000330684.3:c.788G>A	p.Gly263Glu	p.G263E	ENST00000330684	NM_001134407.1	263	gGg/gAg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222293	2222293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	56	763	2	ENST00000326181.6:c.577C>T	p.Arg193Trp	p.R193W	ENST00000326181	NM_032271.2	193	Cgg/Tgg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181432	185181432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	27	343	0	ENST00000265026.3:c.1373G>A	p.Arg458His	p.R458H	ENST00000265026	NM_004721.4	458	cGc/cAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801127	1801127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	143	911	1	ENST00000260795.2:c.256C>A	p.Arg86Ser	p.R86S	ENST00000260795		86	Cgt/Agt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68989690	68989690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	42	423	0	ENST00000288368.4:c.1628G>T	p.Gly543Val	p.G543V	ENST00000288368	NM_024870.2	543	gGa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	371	441	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463575	25463575	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	359	453	0	ENST00000264709.3:c.2107C>G	p.Leu703Val	p.L703V	ENST00000264709	NM_175629.2	703	Ctg/Gtg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0049028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	163	250	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453987	140453987	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	99	209	0	ENST00000288602.6:c.1741A>T	p.Asn581Tyr	p.N581Y	ENST00000288602	NM_004333.4	581	Aat/Tat																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843595	156843595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139875058		P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	72	816	0	ENST00000524377.1:c.1021G>A	p.Val341Met	p.V341M	ENST00000524377	NM_002529.3	341	Gtg/Atg																																																																														
AKT1	207	MSKCC	GRCh37	14	105239245	105239245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	46	637	0	ENST00000349310.3:c.1142C>T	p.Ser381Leu	p.S381L	ENST00000349310	NM_001014432.1	381	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	98	670	1	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993237	72993237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	140	752	3	ENST00000268489.5:c.808G>A	p.Asp270Asn	p.D270N	ENST00000268489	NM_006885.3	270	Gat/Aat																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78727843	78727843	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	140	661	0	ENST00000306801.3:c.688C>G	p.Gln230Glu	p.Q230E	ENST00000306801	NM_020761.2	230	Cag/Gag																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248561	8248561	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	58	795	0	ENST00000335790.3:c.326A>T	p.Tyr109Phe	p.Y109F	ENST00000335790	NM_002315.2	109	tAt/tTt																																																																														
ARAF	369	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	331	417	0	ENST00000377045.4:c.641C>T	p.Ser214Phe	p.S214F	ENST00000377045	NM_001654.4	214	tCc/tTc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190956	185190956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	71	742	0	ENST00000265026.3:c.1837G>A	p.Glu613Lys	p.E613K	ENST00000265026	NM_004721.4	613	Gaa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883998	37883998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	96	810	0	ENST00000269571.5:c.3469C>G	p.Leu1157Val	p.L1157V	ENST00000269571		1157	Ctg/Gtg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2978330	2978330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	155	713	0	ENST00000396946.4:c.1000G>C	p.Glu334Gln	p.E334Q	ENST00000396946	NM_032415.4	334	Gag/Cag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348371	89348371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	95	780	1	ENST00000301030.4:c.4579G>A	p.Asp1527Asn	p.D1527N	ENST00000301030	NM_001256183.1	1527	Gat/Aat																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602473	10602473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	162	930	0	ENST00000171111.5:c.1105G>T	p.Val369Leu	p.V369L	ENST00000171111	NM_203500.1	369	Gtg/Ttg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	103	516	0	ENST00000304494.5:c.260G>T	p.Arg87Leu	p.R87L	ENST00000304494	NM_000077.4	87	cGg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	103	516	0	ENST00000304494.5:c.260G>T	p.Arg87Leu	p.R87L	ENST00000304494	NM_000077.4	87	cGg/cTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30103654	30103654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	74	476	1	ENST00000331968.5:c.1284G>T	p.Trp428Cys	p.W428C	ENST00000331968	NM_002742.2	428	tgG/tgT																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463296	25463296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	127	477	0	ENST00000264709.3:c.2197G>C	p.Glu733Gln	p.E733Q	ENST00000264709	NM_175629.2	733	Gag/Cag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299072	15299072	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	103	626	0	ENST00000263388.2:c.1466A>G	p.Asn489Ser	p.N489S	ENST00000263388	NM_000435.2	489	aAt/aGt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478927	56478927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	68	640	0	ENST00000267101.3:c.383G>T	p.Ser128Ile	p.S128I	ENST00000267101	NM_001982.3	128	aGc/aTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248683	212248683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	97	433	0	ENST00000342788.4:c.3584C>G	p.Pro1195Arg	p.P1195R	ENST00000342788	NM_005235.2	1195	cCa/cGa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969193	93969193	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	20	234	0	ENST00000369303.4:c.1803A>C	p.Lys601Asn	p.K601N	ENST00000369303	NM_004440.3	601	aaA/aaC																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012403	176012404	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AG			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	21	322	0	ENST00000367669.3:c.1531-1_1531delinsCT		p.X511_splice	ENST00000367669	NM_022457.5	511																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206648310	206648310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	60	641	0	ENST00000367120.3:c.331G>A	p.Glu111Lys	p.E111K	ENST00000367120	NM_014002.3	111	Gag/Aag																																																																														
MRE11A	0	MSKCC	GRCh37	11	94192723	94192723	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	45	326	0	ENST00000323929.3:c.1351G>T	p.Glu451Ter	p.E451*	ENST00000323929	NM_005591.3	451	Gaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343490	118343490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	39	372	1	ENST00000534358.1:c.1616G>T	p.Gly539Val	p.G539V	ENST00000534358	NM_005933.3	539	gGa/gTa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81574742	81574742	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	24	302	0	ENST00000298171.2:c.638T>G	p.Leu213Arg	p.L213R	ENST00000298171	NM_000369.2	213	cTg/cGg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571552	95571552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	35	362	0	ENST00000343455.3:c.3125C>G	p.Pro1042Arg	p.P1042R	ENST00000343455	NM_177438.2	1042	cCa/cGa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12013741	12013741	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	69	241	0	ENST00000353533.5:c.683G>A	p.Arg228Lys	p.R228K	ENST00000353533	NM_003010.3	228	aGa/aAa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45422969	45422969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	69	335	0	ENST00000262160.6:c.159G>C	p.Lys53Asn	p.K53N	ENST00000262160	NM_005901.5	53	aaG/aaC																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047360	128047360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	76	391	0	ENST00000285398.2:c.562C>G	p.Leu188Val	p.L188V	ENST00000285398	NM_000122.1	188	Ctt/Gtt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248588	212248588	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	57	477	0	ENST00000342788.4:c.3679C>G	p.Leu1227Val	p.L1227V	ENST00000342788	NM_005235.2	1227	Ctg/Gtg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660301	227660301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	53	605	0	ENST00000305123.5:c.3154G>A	p.Glu1052Lys	p.E1052K	ENST00000305123	NM_005544.2	1052	Gag/Aag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662074	227662074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	227	678	0	ENST00000305123.5:c.1381G>C	p.Glu461Gln	p.E461Q	ENST00000305123	NM_005544.2	461	Gag/Cag																																																																														
PAK7	0	MSKCC	GRCh37	20	9546839	9546839	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	197	456	0	ENST00000353224.5:c.1183A>G	p.Ile395Val	p.I395V	ENST00000353224	NM_177990.2	395	Atc/Gtc																																																																														
EP300	2033	MSKCC	GRCh37	22	41513603	41513603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	49	581	0	ENST00000263253.7:c.507G>A	p.Met169Ile	p.M169I	ENST00000263253	NM_001429.3	169	atG/atA																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623180	52623180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	92	499	0	ENST00000394830.3:c.2871G>T	p.Met957Ile	p.M957I	ENST00000394830	NM_018313.4	957	atG/atT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498450	89498450	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	28	299	0	ENST00000336596.2:c.2422T>A	p.Trp808Arg	p.W808R	ENST00000336596	NM_005233.5	808	Tgg/Agg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911651	134911651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	44	333	0	ENST00000398015.3:c.2116G>T	p.Asp706Tyr	p.D706Y	ENST00000398015	NM_004441.4	706	Gat/Tat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127285	55127285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	85	417	0	ENST00000257290.5:c.73C>G	p.Leu25Val	p.L25V	ENST00000257290	NM_006206.4	25	Ctt/Gtt																																																																														
KDR	3791	MSKCC	GRCh37	4	55956145	55956145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	82	426	0	ENST00000263923.4:c.3170C>A	p.Pro1057Gln	p.P1057Q	ENST00000263923	NM_002253.2	1057	cCa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532737	187532737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	41	401	0	ENST00000441802.2:c.9656C>T	p.Ser3219Leu	p.S3219L	ENST00000441802	NM_005245.3	3219	tCa/tTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630710	187630710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	39	507	0	ENST00000441802.2:c.272G>C	p.Gly91Ala	p.G91A	ENST00000441802	NM_005245.3	91	gGa/gCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295226	1295226	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	110	251	0				ENST00000310581	NM_198253.2																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176522696	176522696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	69	851	0	ENST00000292408.4:c.1793G>T	p.Arg598Leu	p.R598L	ENST00000292408	NM_213647.1	598	cGa/cTa																																																																														
IRF4	3662	MSKCC	GRCh37	6	394938	394938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	76	446	0	ENST00000380956.4:c.334G>C	p.Glu112Gln	p.E112Q	ENST00000380956	NM_001195286.1	112	Gag/Cag																																																																														
E2F3	1871	MSKCC	GRCh37	6	20480092	20480092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	83	351	0	ENST00000346618.3:c.409G>C	p.Glu137Gln	p.E137Q	ENST00000346618	NM_001949.4	137	Gag/Cag																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287890	33287890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	151	466	0	ENST00000374542.5:c.1363G>C	p.Glu455Gln	p.E455Q	ENST00000374542	NM_001141970.1	455	Gag/Cag																																																																														
FYN	2534	MSKCC	GRCh37	6	111995807	111995807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	34	440	0	ENST00000368678.4:c.1291G>T	p.Ala431Ser	p.A431S	ENST00000368678		431	Gcc/Tcc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285479	38285479	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	91	508	0	ENST00000425967.3:c.674del	p.Gly225AlafsTer23	p.G225Afs*23	ENST00000425967	NM_001174067.1	225	gGc/gc																																																																														
NBN	4683	MSKCC	GRCh37	8	90965473	90965473	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	52	257	0	ENST00000265433.3:c.1844C>G	p.Ser615Cys	p.S615C	ENST00000265433	NM_002485.4	615	tCt/tGt																																																																														
ABL1	25	MSKCC	GRCh37	9	133755916	133755916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	91	597	0	ENST00000318560.5:c.1543G>T	p.Val515Phe	p.V515F	ENST00000318560	NM_005157.4	515	Gtc/Ttc																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793591	89793591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	57	280	0	ENST00000336032.3:c.660G>T	p.Leu220Phe	p.L220F	ENST00000336032	NM_006813.2	220	ttG/ttT																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012403	176012403	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	21	322	0	ENST00000367669.3:c.1531G>T	p.Glu511Ter	p.E511*	ENST00000367669	NM_022457.5	511	Gag/Tag																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012404	176012404	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0049029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	21	306	0	ENST00000367669.3:c.1531-1G>C		p.X511_splice	ENST00000367669	NM_022457.5	511																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0049031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	286	653	1	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
RB1	5925	MSKCC	GRCh37	13	48941643	48941643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	29	157	0	ENST00000267163.4:c.953C>G	p.Ser318Cys	p.S318C	ENST00000267163	NM_000321.2	318	tCt/tGt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	383	774	0	ENST00000344626.4:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000344626	NM_003072.3	882	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0049031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	107	353	0	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																														
ATM	472	MSKCC	GRCh37	11	108199881	108199881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	24	192	0	ENST00000278616.4:c.7223C>T	p.Ser2408Leu	p.S2408L	ENST00000278616	NM_000051.3	2408	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151893043	151893043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	49	305	0	ENST00000262189.6:c.4327G>A	p.Asp1443Asn	p.D1443N	ENST00000262189	NM_170606.2	1443	Gac/Aac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431797	49431798	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0049031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	69	665	0	ENST00000301067.7:c.9341_9342del	p.Val3114AlafsTer3	p.V3114Afs*3	ENST00000301067	NM_003482.3	3114	gTG/g																																																																														
ATM	472	MSKCC	GRCh37	11	108186618	108186618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	30	256	0	ENST00000278616.4:c.6075G>T	p.Lys2025Asn	p.K2025N	ENST00000278616	NM_000051.3	2025	aaG/aaT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779809	3779810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	382	708	0	ENST00000262367.5:c.5238dup	p.Leu1747AlafsTer5	p.L1747Afs*5	ENST00000262367	NM_004380.2	1746	-/G																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277897	41277898	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0049031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	164	298	0	ENST00000349496.5:c.1862_1863dup	p.Ala622LeufsTer20	p.A622Lfs*20	ENST00000349496	NM_001904.3	621	ctt/cTTtt																																																																														
TP63	8626	MSKCC	GRCh37	3	189455536	189455536	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	198	362	0	ENST00000264731.3:c.70G>C	p.Glu24Gln	p.E24Q	ENST00000264731	NM_003722.4	24	Gaa/Caa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969329	44969329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	139	141	0	ENST00000377967.4:c.4012del	p.Val1338PhefsTer18	p.V1338Ffs*18	ENST00000377967	NM_021140.2	1337	gaG/ga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123181278	123181279	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGAAGCAGAACGGAATAAAATG			P-0049031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	73	118	0	ENST00000218089.9:c.745_767dup	p.Ile256MetfsTer8	p.I256Mfs*8	ENST00000218089	NM_001042749.1	248	tat/tATGAAGCAGAACGGAATAAAATGat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	412	628	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
TET1	80312	MSKCC	GRCh37	10	70450847	70450847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	272	376	0	ENST00000373644.4:c.5687C>A	p.Ala1896Asp	p.A1896D	ENST00000373644	NM_030625.2	1896	gCt/gAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231701	66231701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	156	294	1	ENST00000273854.3:c.1999G>T	p.Ala667Ser	p.A667S	ENST00000273854	NM_004439.5	667	Gct/Tct																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844415	156844416	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	66	745	0	ENST00000524377.1:c.1251+1dup		p.-416fs	ENST00000524377	NM_002529.3	416	-/G																																																																														
CCND2	894	MSKCC	GRCh37	12	4383313	4383313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	85	637	0	ENST00000261254.3:c.107G>T	p.Arg36Leu	p.R36L	ENST00000261254	NM_001759.3	36	cGc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	48	360	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73345265	73345265	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	25	241	0	ENST00000377767.4:c.1624G>T	p.Glu542Ter	p.E542*	ENST00000377767	NM_014953.3	542	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	47	538	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385182	41385182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	121	648	0	ENST00000373198.4:c.779G>T	p.Arg260Leu	p.R260L	ENST00000373198	NM_133170.3	260	cGg/cTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259238	89259238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	36	340	0	ENST00000336596.2:c.382G>T	p.Asp128Tyr	p.D128Y	ENST00000336596	NM_005233.5	128	Gat/Tat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178941899	178941899	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	22	307	0	ENST00000263967.3:c.2218A>T	p.Arg740Trp	p.R740W	ENST00000263967	NM_006218.2	740	Agg/Tgg																																																																														
HGF	3082	MSKCC	GRCh37	7	81372780	81372780	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	29	295	0	ENST00000222390.5:c.754del	p.Asp252ThrfsTer42	p.D252Tfs*42	ENST00000222390	NM_000601.4	252	Gac/ac																																																																														
BRAF	673	MSKCC	GRCh37	7	140482873	140482873	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	43	455	0	ENST00000288602.6:c.1262G>C	p.Gly421Ala	p.G421A	ENST00000288602	NM_004333.4	421	gGa/gCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879309	151879309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	38	389	0	ENST00000262189.6:c.5636C>T	p.Pro1879Leu	p.P1879L	ENST00000262189	NM_170606.2	1879	cCg/cTg																																																																														
NBN	4683	MSKCC	GRCh37	8	90965708	90965708	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	39	274	0	ENST00000265433.3:c.1609A>T	p.Ser537Cys	p.S537C	ENST00000265433	NM_002485.4	537	Agt/Tgt																																																																														
MED12	9968	MSKCC	GRCh37	X	70354281	70354281	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	76	750	0	ENST00000374080.3:c.4692C>G	p.Ile1564Met	p.I1564M	ENST00000374080		1564	atC/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0049037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	366	509	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0049037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	132	253	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845549	72845551	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs763986819		P-0049037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	70	545	0	ENST00000268489.5:c.3789_3791del	p.Asn1263del	p.N1263del	ENST00000268489	NM_006885.3	1263	aaCAAg/aag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436342	52436342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	194	634	1	ENST00000460680.1:c.2152C>T	p.Arg718Trp	p.R718W	ENST00000460680	NM_004656.3	718	Cgg/Tgg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746132	162746132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	84	231	0	ENST00000367921.3:c.2255G>T	p.Arg752Leu	p.R752L	ENST00000367921	NM_006182.2	752	cGc/cTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100282	8100282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	153	686	0	ENST00000346208.3:c.256C>T	p.Arg86Cys	p.R86C	ENST00000346208		86	Cgc/Tgc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316393	14316393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	121	363	0	ENST00000256196.4:c.212G>A	p.Gly71Glu	p.G71E	ENST00000256196		71	gGa/gAa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117934	70117935	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTCA			P-0049037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	306	413	0	ENST00000245479.2:c.403_406dup	p.Ser136ThrfsTer117	p.S136Tfs*117	ENST00000245479	NM_000346.3	134	-/CTCA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566703	212566703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	31	217	0	ENST00000342788.4:c.1478C>G	p.Ala493Gly	p.A493G	ENST00000342788	NM_005235.2	493	gCt/gGt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139403459	139403459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	141	831	0	ENST00000277541.6:c.3034G>A	p.Gly1012Ser	p.G1012S	ENST00000277541	NM_017617.3	1012	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	13	282	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123159713	123159713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	78	275	0	ENST00000218089.9:c.68C>T	p.Ser23Phe	p.S23F	ENST00000218089	NM_001042749.1	23	tCt/tTt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041117	42041117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	71	370	0	ENST00000219905.7:c.5495G>C	p.Arg1832Pro	p.R1832P	ENST00000219905	NM_001164273.1	1832	cGg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578433	7578447	+	inframe_deletion	In_Frame_Del	DEL	GACTGCTTGTAGATG	GACTGCTTGTAGATG	-			P-0049040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	572	662	0	ENST00000269305.4:c.483_497del	p.Ile162_Ser166del	p.I162_S166del	ENST00000269305	NM_001126112.2	161	gcCATCTACAAGCAGTCa/gca																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680817	30680817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	75	420	0	ENST00000376406.3:c.902C>T	p.Thr301Ile	p.T301I	ENST00000376406	NM_014641.2	301	aCa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	166	547	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0049041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	13	393	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25497901	25497901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	49	687	0	ENST00000264709.3:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000264709	NM_175629.2	183	cGg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170543	11170543	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	104	688	0	ENST00000344626.4:c.4750G>T	p.Glu1584Ter	p.E1584*	ENST00000344626	NM_003072.3	1584	Gaa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40864870	40864870	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0049041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	34	320	0	ENST00000373198.4:c.2398T>A	p.Leu800Met	p.L800M	ENST00000373198	NM_133170.3	800	Ttg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	120	326	0				ENST00000310581	NM_198253.2																																																																																
FAM46C	0	MSKCC	GRCh37	1	118166231	118166231	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	36	291	0	ENST00000369448.3:c.741C>A	p.Tyr247Ter	p.Y247*	ENST00000369448	NM_017709.3	247	taC/taA																																																																														
ATM	472	MSKCC	GRCh37	11	108121773	108121773	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	39	300	0	ENST00000278616.4:c.1581T>G	p.Phe527Leu	p.F527L	ENST00000278616	NM_000051.3	527	ttT/ttG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	92	328	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24143269	24143269	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	227	588	0	ENST00000263121.7:c.500+1G>T		p.X167_splice	ENST00000263121	NM_003073.3	167																																																																															
PGR	5241	MSKCC	GRCh37	11	100922293	100922293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149186732		P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	43	218	0	ENST00000325455.5:c.2219G>A	p.Arg740Gln	p.R740Q	ENST00000325455	NM_001202474.3	740	cGa/cAa																																																																														
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	177	424	0	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117423	115117423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	99	257	0	ENST00000257566.3:c.751C>T	p.Arg251Trp	p.R251W	ENST00000257566	NM_016569.3	251	Cgg/Tgg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742476	17742476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	221	583	0	ENST00000250003.3:c.658G>C	p.Ala220Pro	p.A220P	ENST00000250003	NM_002478.4	220	Gcc/Ccc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343835	118343835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	173	391	0	ENST00000534358.1:c.1961C>T	p.Pro654Leu	p.P654L	ENST00000534358	NM_005933.3	654	cCt/cTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877494	28877494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	101	288	0	ENST00000282397.4:c.3827C>G	p.Thr1276Ser	p.T1276S	ENST00000282397	NM_002019.4	1276	aCc/aGc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602421	10602421	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	285	690	0	ENST00000171111.5:c.1157del	p.Gly386AlafsTer14	p.G386Afs*14	ENST00000171111	NM_203500.1	386	gGc/gc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30312978	30312978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	194	459	2	ENST00000262643.3:c.781G>T	p.Asp261Tyr	p.D261Y	ENST00000262643	NM_001238.2	261	Gac/Tac																																																																														
CDK6	1021	MSKCC	GRCh37	7	92300796	92300797	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	99	353	2	ENST00000265734.4:c.590_591delinsAA	p.Ala197Glu	p.A197E	ENST00000265734	NM_001259.6	197	gCC/gAA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499687	8499687	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	165	380	0	ENST00000356435.5:c.2282del	p.Gly761AlafsTer5	p.G761Afs*5	ENST00000356435		761	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	600	698	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	600	698	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0049046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	162	572	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	600	698	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193094309	193094309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	64	300	0	ENST00000367435.3:c.199G>A	p.Val67Met	p.V67M	ENST00000367435	NM_024529.4	67	Gtg/Atg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	58	190	0	ENST00000397062.3:c.85G>A	p.Asp29Asn	p.D29N	ENST00000397062	NM_006164.4	29	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	145	562	0	ENST00000269305.4:c.548C>A	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tAa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	124	207	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	462	270	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192470	138192470	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	145	221	0	ENST00000237289.4:c.106A>G	p.Ile36Val	p.I36V	ENST00000237289	NM_001270507.1	36	Atc/Gtc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0049049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	83	325	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552696	18552696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	36	482	1	ENST00000266497.5:c.2107G>A	p.Glu703Lys	p.E703K	ENST00000266497		703	Gaa/Aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	49033971	49033971	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0049049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	18	251	0	ENST00000267163.4:c.2106+2T>G		p.X702_splice	ENST00000267163	NM_000321.2	702																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399991	139399991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	71	732	1	ENST00000277541.6:c.4357G>A	p.Glu1453Lys	p.E1453K	ENST00000277541	NM_017617.3	1453	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0049050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	171	598	1	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526700	106526700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	29	302	0	ENST00000359195.3:c.2993C>T	p.Ser998Phe	p.S998F	ENST00000359195	NM_002649.2	998	tCt/tTt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073887	8073888	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0049050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	55	272	0	ENST00000377482.5:c.770_771dup	p.Asn258LeufsTer6	p.N258Lfs*6	ENST00000377482	NM_018948.3	257	-/TT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057947	27057947	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	197	469	0	ENST00000324856.7:c.1655C>A	p.Ser552Ter	p.S552*	ENST00000324856	NM_006015.4	552	tCa/tAa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864936	57864936	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	70	537	0	ENST00000228682.2:c.2413C>G	p.Arg805Gly	p.R805G	ENST00000228682	NM_005269.2	805	Cga/Gga																																																																														
FLT1	2321	MSKCC	GRCh37	13	28885841	28885841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	17	309	0	ENST00000282397.4:c.3521C>T	p.Ala1174Val	p.A1174V	ENST00000282397	NM_002019.4	1174	gCc/gTc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514571	103514581	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGAGGAGCT	GAAGAGGAGCT	-			P-0049050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	33	257	0	ENST00000355739.4:c.1073_1083del	p.Glu358GlyfsTer3	p.E358Gfs*3	ENST00000355739	NM_000123.3	358	GAAGAGGAGCTg/g																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225344	2225344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	80	649	0	ENST00000326181.6:c.1429G>T	p.Ala477Ser	p.A477S	ENST00000326181	NM_032271.2	477	Gcc/Tcc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502271	157502271	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	110	435	0	ENST00000346085.5:c.3304C>T	p.Arg1102Ter	p.R1102*	ENST00000346085	NM_020732.3	1102	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	258	500	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821458	32821458	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	220	777	0	ENST00000354258.4:c.136G>T	p.Glu46Ter	p.E46*	ENST00000354258	NM_000593.5	46	Gag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140434458	140434458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	71	279	0	ENST00000288602.6:c.2240C>T	p.Ala747Val	p.A747V	ENST00000288602	NM_004333.4	747	gCt/gTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431167	49431170	+	frameshift_variant	Frame_Shift_Del	DEL	ACCT	ACCT	-			P-0049057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	547	641	0	ENST00000301067.7:c.9969_9972del	p.Gly3324CysfsTer5	p.G3324Cfs*5	ENST00000301067	NM_003482.3	3323	ccAGGT/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445677	49445681	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCC	ATGCC	-			P-0049057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	118	716	0	ENST00000301067.7:c.1785_1789del	p.Glu595AspfsTer8	p.E595Dfs*8	ENST00000301067	NM_003482.3	595	gaGGCATct/gact																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58734021	58734021	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	198	451	0	ENST00000305921.3:c.1079A>T	p.Gln360Leu	p.Q360L	ENST00000305921	NM_003620.3	360	cAg/cTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	84	321	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0049060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	128	506	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652017	36652017	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	75	790	1	ENST00000244741.5:c.139G>T	p.Glu47Ter	p.E47*	ENST00000244741	NM_000389.4	47	Gag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843447	3843447	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	89	408	1	ENST00000262367.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000262367	NM_004380.2	386	Cga/Tga																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652048	36652049	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	200	805	0	ENST00000244741.5:c.171dup	p.Pro58ThrfsTer5	p.P58Tfs*5	ENST00000244741	NM_000389.4	57	aca/acAa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652074	36652074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	64	791	0	ENST00000244741.5:c.196G>C	p.Glu66Gln	p.E66Q	ENST00000244741	NM_000389.4	66	Gag/Cag																																																																														
BTK	695	MSKCC	GRCh37	X	100613418	100613418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	80	216	0	ENST00000308731.7:c.982C>G	p.Gln328Glu	p.Q328E	ENST00000308731	NM_000061.2	328	Caa/Gaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46298785	46298785	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	154	276	0	ENST00000334344.6:c.5433del	p.Ala1812ProfsTer27	p.A1812Pfs*27	ENST00000334344	NM_152641.2	1811	cTt/ct																																																																														
CDH1	999	MSKCC	GRCh37	16	68835591	68835591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	248	363	2	ENST00000261769.5:c.182C>T	p.Thr61Ile	p.T61I	ENST00000261769	NM_004360.3	61	aCc/aTc																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	67	312	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	89	263	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	175	514	1	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	72	603	1	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	175	217	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	54	462	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	78	199	3	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896573	78896573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	188	649	0	ENST00000306801.3:c.2570C>T	p.Thr857Met	p.T857M	ENST00000306801	NM_020761.2	857	aCg/aTg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	90	218	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	229	784	3	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	95	424	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	96	345	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	205	695	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	109	310	3	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	137	467	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	223	746	0	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	208	564	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																																																														
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	131	370	1	ENST00000355112.3:c.3651delA	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24145549	24145549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	221	562	1	ENST00000263121.7:c.568C>T	p.Arg190Trp	p.R190W	ENST00000263121	NM_003073.3	190	Cgg/Tgg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435128	110435129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs772322568		P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	116	633	0	ENST00000375856.3:c.3272dup	p.Lys1092GlufsTer233	p.K1092Efs*233	ENST00000375856	NM_003749.2	1091	ccg/ccCg																																																																														
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	105	300	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123837	46123837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	119	249	0	ENST00000334344.6:c.109delA	p.Ile37SerfsTer21	p.I37Sfs*21	ENST00000334344	NM_152641.2	35	Aaa/aa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	81	277	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957465	175957465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	95	282	0	ENST00000367669.3:c.1931del	p.Asn644ThrfsTer3	p.N644Tfs*3	ENST00000367669	NM_022457.5	644	aAc/ac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675196	30675196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	133	428	0	ENST00000376406.3:c.3049G>A	p.Ala1017Thr	p.A1017T	ENST00000376406	NM_014641.2	1017	Gct/Act																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404587	8404587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	58	239	0	ENST00000356435.5:c.4160C>T	p.Ala1387Val	p.A1387V	ENST00000356435		1387	gCg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1279483	1279483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	226	794	2	ENST00000310581.5:c.2053G>A	p.Asp685Asn	p.D685N	ENST00000310581	NM_198253.2	685	Gat/Aat																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200107	138200107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	121	351	0	ENST00000237289.4:c.1525G>A	p.Ala509Thr	p.A509T	ENST00000237289	NM_001270507.1	509	Gcc/Acc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	141	755	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231610	5231611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	28	128	0	ENST00000357368.4:c.1865dup	p.Gln623SerfsTer4	p.Q623Sfs*4	ENST00000357368	NM_002850.3	622	cct/ccCt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210432	36210432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	118	451	0	ENST00000222270.7:c.425G>A	p.Arg142Gln	p.R142Q	ENST00000222270	NM_014727.1	142	cGa/cAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778302	3778302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	223	686	0	ENST00000262367.5:c.6746G>A	p.Arg2249His	p.R2249H	ENST00000262367	NM_004380.2	2249	cGc/cAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905960	50905960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	217	793	0	ENST00000440232.2:c.932G>T	p.Arg311Leu	p.R311L	ENST00000440232	NM_002691.3	311	cGc/cTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	118	323	0	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436815	110436815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	203	730	0	ENST00000375856.3:c.1586del	p.Pro529ArgfsTer15	p.P529Rfs*15	ENST00000375856	NM_003749.2	529	cCg/cg																																																																														
SMO	6608	MSKCC	GRCh37	7	128851930	128851930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	152	588	0	ENST00000249373.3:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000249373	NM_005631.4	668	Cgc/Tgc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001085	150001085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	80	313	0	ENST00000253339.5:c.2519G>A	p.Gly840Asp	p.G840D	ENST00000253339		840	gGt/gAt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602290	10602290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	246	621	0	ENST00000171111.5:c.1288G>A	p.Gly430Ser	p.G430S	ENST00000171111	NM_203500.1	430	Ggc/Agc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268792	98268793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	151	379	0	ENST00000331920.6:c.290dupA	p.Asn97LysfsTer43	p.N97Kfs*43	ENST00000331920	NM_000264.3	97	aac/aaAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925621	114925622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	156	508	0	ENST00000543371.1:c.1704dup	p.Ser569LeufsTer40	p.S569Lfs*40	ENST00000543371	NM_001198531.1	567	gcc/gCcc																																																																														
POLE	5426	MSKCC	GRCh37	12	133245404	133245404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	146	505	1	ENST00000320574.5:c.1916G>A	p.Arg639His	p.R639H	ENST00000320574	NM_006231.2	639	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112164565	112164566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	67	157	0	ENST00000257430.4:c.1643dup	p.Leu548PhefsTer12	p.L548Ffs*12	ENST00000257430	NM_000038.5	547	gtt/gTtt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979529	7979529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	163	472	0	ENST00000319144.4:c.1496G>A	p.Arg499His	p.R499H	ENST00000319144	NM_001139.2	499	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424442	49424443	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	155	562	2	ENST00000301067.7:c.13780dup	p.Ala4594GlyfsTer12	p.A4594Gfs*12	ENST00000301067	NM_003482.3	4594	gcc/gGcc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201854	67201856	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	164	570	0	ENST00000312629.5:c.1059_1061del	p.Glu353del	p.E353del	ENST00000312629	NM_003952.2	352	GAG/-																																																																														
FYN	2534	MSKCC	GRCh37	6	111995809	111995809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	72	332	0	ENST00000368678.4:c.1289C>T	p.Thr430Met	p.T430M	ENST00000368678		430	aCg/aTg																																																																														
CDC42	998	MSKCC	GRCh37	1	22412962	22412962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	32	97	0	ENST00000344548.3:c.209T>C	p.Leu70Pro	p.L70P	ENST00000344548	NM_001039802.1	70	cTg/cCg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982426	201982426	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	170	555	0	ENST00000359651.3:c.805G>T	p.Ala269Ser	p.A269S	ENST00000359651		269	Gcg/Tcg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939438	71939438	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	211	746	0	ENST00000298229.2:c.293T>C	p.Leu98Pro	p.L98P	ENST00000298229	NM_001567.3	98	cTc/cCc																																																																														
ATM	472	MSKCC	GRCh37	11	108214057	108214057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	74	221	0	ENST00000278616.4:c.8377C>T	p.Pro2793Ser	p.P2793S	ENST00000278616	NM_000051.3	2793	Cca/Tca																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125523706	125523706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	58	245	1	ENST00000428830.2:c.1299G>T	p.Met433Ile	p.M433I	ENST00000428830	NM_001114121.2	433	atG/atT																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719935	18719935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	81	342	0	ENST00000266497.5:c.3832A>G	p.Arg1278Gly	p.R1278G	ENST00000266497		1278	Aga/Gga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244305	46244306	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	100	247	0	ENST00000334344.6:c.2401_2402del	p.Met801ValfsTer39	p.M801Vfs*39	ENST00000334344	NM_152641.2	800	cAT/c																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244548	46244548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	132	399	0	ENST00000334344.6:c.2642C>A	p.Ala881Asp	p.A881D	ENST00000334344	NM_152641.2	881	gCt/gAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912528	32912528	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	103	354	0	ENST00000380152.3:c.4036A>G	p.Thr1346Ala	p.T1346A	ENST00000380152		1346	Act/Gct																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436380	110436380	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	216	590	0	ENST00000375856.3:c.2021A>C	p.Asp674Ala	p.D674A	ENST00000375856	NM_003749.2	674	gAc/gCc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068870	30068870	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	96	368	0	ENST00000331968.5:c.2059A>T	p.Ile687Phe	p.I687F	ENST00000331968	NM_002742.2	687	Att/Ttt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108011	30108011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	125	384	0	ENST00000331968.5:c.796A>G	p.Lys266Glu	p.K266E	ENST00000331968	NM_002742.2	266	Aaa/Gaa																																																																														
AKT1	207	MSKCC	GRCh37	14	105239857	105239857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	154	650	0	ENST00000349310.3:c.763G>A	p.Ala255Thr	p.A255T	ENST00000349310	NM_001014432.1	255	Gct/Act																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129568	2129568	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	227	723	0	ENST00000219476.3:c.3298del	p.Val1100CysfsTer3	p.V1100Cfs*3	ENST00000219476	NM_000548.3	1099	Ggg/gg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136350	2136350	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	200	633	1	ENST00000219476.3:c.4819A>G	p.Thr1607Ala	p.T1607A	ENST00000219476	NM_000548.3	1607	Acc/Gcc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89880960	89880960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	121	382	0	ENST00000389301.3:c.251A>G	p.Glu84Gly	p.E84G	ENST00000389301	NM_000135.2	84	gAg/gGg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40467815	40467815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	147	378	0	ENST00000264657.5:c.2261C>T	p.Ser754Phe	p.S754F	ENST00000264657	NM_139276.2	754	tCc/tTc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40870516	40870516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	148	466	0	ENST00000428826.2:c.887C>T	p.Thr296Ile	p.T296I	ENST00000428826		296	aCa/aTa																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519943	66519943	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	75	322	0	ENST00000358598.2:c.426T>A	p.Asp142Glu	p.D142E	ENST00000358598	NM_212471.2	142	gaT/gaA																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117695	70117695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	275	657	1	ENST00000245479.2:c.163A>G	p.Lys55Glu	p.K55E	ENST00000245479	NM_000346.3	55	Aag/Gag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216659	2216659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	223	801	1	ENST00000398665.3:c.2303C>T	p.Ala768Val	p.A768V	ENST00000398665	NM_032482.2	768	gCa/gTa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226766	2226766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	182	608	0	ENST00000398665.3:c.4246C>T	p.Arg1416Cys	p.R1416C	ENST00000398665	NM_032482.2	1416	Cgc/Tgc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110595	4110595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	160	605	0	ENST00000262948.5:c.362T>C	p.Val121Ala	p.V121A	ENST00000262948	NM_030662.3	121	gTc/gCc																																																																														
AXL	558	MSKCC	GRCh37	19	41725320	41725320	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	204	680	0	ENST00000301178.4:c.23T>C	p.Met8Thr	p.M8T	ENST00000301178	NM_021913.4	8	aTg/aCg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250035	39250035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	103	405	0	ENST00000402219.2:c.1534C>T	p.His512Tyr	p.H512Y	ENST00000402219	NM_005633.3	512	Cat/Tat																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010599	48010599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	177	474	0	ENST00000234420.5:c.227T>C	p.Leu76Pro	p.L76P	ENST00000234420	NM_000179.2	76	cTg/cCg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021680	31021680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	124	398	0	ENST00000375687.4:c.1679C>T	p.Pro560Leu	p.P560L	ENST00000375687	NM_015338.5	560	cCa/cTa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52685799	52685799	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	100	316	0	ENST00000394830.3:c.673A>G	p.Lys225Glu	p.K225E	ENST00000394830	NM_018313.4	225	Aag/Gag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920365	134920365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	130	368	0	ENST00000398015.3:c.2180G>A	p.Gly727Asp	p.G727D	ENST00000398015	NM_004441.4	727	gGc/gAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156630	55156630	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	143	458	0	ENST00000257290.5:c.3031A>G	p.Arg1011Gly	p.R1011G	ENST00000257290	NM_006206.4	1011	Aga/Gga																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911308	29911309	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	80	547	0	ENST00000376809.5:c.608dup	p.Gln204AlafsTer17	p.Q204Afs*17	ENST00000376809	NM_002116.7	203	ctg/cTtg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323131	31323131	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	177	532	0	ENST00000412585.2:c.858G>C	p.Gln286His	p.Q286H	ENST00000412585	NM_005514.6	286	caG/caC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860398	151860398	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	126	405	0	ENST00000262189.6:c.10264C>T	p.Gln3422Ter	p.Q3422*	ENST00000262189	NM_170606.2	3422	Caa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874227	151874227	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	71	288	0	ENST00000262189.6:c.8311del	p.Ser2771AlafsTer7	p.S2771Afs*7	ENST00000262189	NM_170606.2	2771	Agc/gc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128201187	128201189	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	112	538	0	ENST00000265960.3:c.1546_1548del	p.Glu516del	p.E516del	ENST00000265960	NM_001006617.1	516	GAG/-																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412479	63412479	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	25	306	0	ENST00000330258.3:c.688A>T	p.Asn230Tyr	p.N230Y	ENST00000330258	NM_152424.3	230	Aac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0049066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	275	426	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0049066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	275	426	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0049066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	543	591	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396771	396771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	236	589	0	ENST00000262320.3:c.255G>A	p.Trp85Ter	p.W85*	ENST00000262320	NM_003502.3	85	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0049066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	275	426	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68867253	68867253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	209	427	0	ENST00000261769.5:c.2500G>A	p.Asp834Asn	p.D834N	ENST00000261769	NM_004360.3	834	Gac/Aac																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191298	185191298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	39	529	0	ENST00000265026.3:c.2179G>A	p.Asp727Asn	p.D727N	ENST00000265026	NM_004721.4	727	Gac/Aac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967880	93967880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	61	381	0	ENST00000369303.4:c.2047G>T	p.Ala683Ser	p.A683S	ENST00000369303	NM_004440.3	683	Gca/Tca																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995502	68995502	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	140	370	1	ENST00000288368.4:c.1906A>T	p.Ile636Phe	p.I636F	ENST00000288368	NM_024870.2	636	Att/Ttt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717656	89717657	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	136	440	0	ENST00000371953.3:c.683dup	p.Asn228LysfsTer15	p.N228Kfs*15	ENST00000371953	NM_000314.4	227	-/A																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437571	56437572	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	157	561	0	ENST00000407977.2:c.890_891insG	p.Asn297LysfsTer146	p.N297Kfs*146	ENST00000407977		297	aac/aaGc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11169377	11169377	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	42	449	1	ENST00000361445.4:c.7498A>T	p.Ile2500Phe	p.I2500F	ENST00000361445	NM_004958.3	2500	Att/Ttt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	177	536	0	ENST00000361445.4:c.7280T>A	p.Leu2427Gln	p.L2427Q	ENST00000361445	NM_004958.3	2427	cTg/cAg																																																																														
ATM	472	MSKCC	GRCh37	11	108128229	108128229	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	125	334	0	ENST00000278616.4:c.2272G>T	p.Glu758Ter	p.E758*	ENST00000278616	NM_000051.3	758	Gaa/Taa																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	18	506	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678518	88678518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	67	453	0	ENST00000360948.2:c.1018C>A	p.Gln340Lys	p.Q340K	ENST00000360948	NM_001012338.2	340	Cag/Aag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593417	48593417	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	96	238	0	ENST00000342988.3:c.1168G>T	p.Glu390Ter	p.E390*	ENST00000342988	NM_005359.5	390	Gaa/Taa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604784	48604784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	22	319	0	ENST00000342988.3:c.1606C>A	p.Leu536Ile	p.L536I	ENST00000342988	NM_005359.5	536	Cta/Ata																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743883	40743883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	106	484	2	ENST00000373198.4:c.3112G>A	p.Glu1038Lys	p.E1038K	ENST00000373198	NM_133170.3	1038	Gag/Aag																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119635021	119635021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0049070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	26	152	0	ENST00000316626.5:c.478T>G	p.Leu160Val	p.L160V	ENST00000316626		160	Ttg/Gtg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0049070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	74	289	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	47	214	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	123	350	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738509	145738509	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	92	521	1	ENST00000428558.2:c.2476C>T	p.Arg826Ter	p.R826*	ENST00000428558	NM_004260.3	826	Cga/Tga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317111	87317111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	46	293	1	ENST00000277120.3:c.250G>A	p.Glu84Lys	p.E84K	ENST00000277120		84	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	34	308	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	17	229	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
ATR	545	MSKCC	GRCh37	3	142215937	142215937	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs141429029		P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	43	315	0	ENST00000350721.4:c.5656C>T	p.Arg1886Ter	p.R1886*	ENST00000350721	NM_001184.3	1886	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	20	154	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	28	273	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748309	41748309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	107	564	2	ENST00000226382.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000226382	NM_003924.3	154	Cgc/Tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	91	407	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247028	53247028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	92	457	1	ENST00000375401.3:c.472G>A	p.Glu158Lys	p.E158K	ENST00000375401	NM_004187.3	158	Gaa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	34	180	0	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248749	212248749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	13	209	0	ENST00000342788.4:c.3518C>A	p.Ser1173Tyr	p.S1173Y	ENST00000342788	NM_005235.2	1173	tCt/tAt																																																																														
IGF1	3479	MSKCC	GRCh37	12	102874103	102874103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	20	170	0	ENST00000307046.8:c.57C>A	p.Phe19Leu	p.F19L	ENST00000307046	NM_001111285.1	19	ttC/ttA																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911519	134911519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	87	361	0	ENST00000398015.3:c.1984C>T	p.Arg662Cys	p.R662C	ENST00000398015	NM_004441.4	662	Cgt/Tgt																																																																														
ATRX	546	MSKCC	GRCh37	X	76891541	76891541	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	16	257	0	ENST00000373344.5:c.4564G>T	p.Glu1522Ter	p.E1522*	ENST00000373344	NM_000489.3	1522	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153259071	153259071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	14	136	0	ENST00000281708.4:c.744G>T	p.Glu248Asp	p.E248D	ENST00000281708	NM_033632.3	248	gaG/gaT																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041527	14041527	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	53	293	0	ENST00000311895.7:c.2074C>T	p.Arg692Ter	p.R692*	ENST00000311895	NM_005236.2	692	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332915	153332915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200698994		P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	35	216	1	ENST00000281708.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000281708	NM_033632.3	14	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	35	200	0	ENST00000257430.4:c.4199C>T	p.Ser1400Leu	p.S1400L	ENST00000257430	NM_000038.5	1400	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108141989	108141989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	21	276	0	ENST00000278616.4:c.2933C>A	p.Ser978Tyr	p.S978Y	ENST00000278616	NM_000051.3	978	tCt/tAt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851255	156851255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	75	503	0	ENST00000524377.1:c.2212G>A	p.Asp738Asn	p.D738N	ENST00000524377	NM_002529.3	738	Gac/Aac																																																																														
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	59	413	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	20	216	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557837	187557837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184443677		P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	82	312	0	ENST00000441802.2:c.3874G>A	p.Glu1292Lys	p.E1292K	ENST00000441802	NM_005245.3	1292	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	20	247	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108098533	108098533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	16	176	0	ENST00000278616.4:c.103C>T	p.Arg35Ter	p.R35*	ENST00000278616	NM_000051.3	35	Cga/Tga																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161380	55161380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	16	341	0	ENST00000257290.5:c.3211G>A	p.Asp1071Asn	p.D1071N	ENST00000257290	NM_006206.4	1071	Gac/Aac																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	69	363	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849069	156849069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	97	583	1	ENST00000524377.1:c.1961G>A	p.Arg654His	p.R654H	ENST00000524377	NM_002529.3	654	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624270	89624270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	40	245	0	ENST00000371953.3:c.44G>A	p.Arg15Lys	p.R15K	ENST00000371953	NM_000314.4	15	aGa/aAa																																																																														
ATM	472	MSKCC	GRCh37	11	108201008	108201008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	35	339	0	ENST00000278616.4:c.7375C>T	p.Arg2459Cys	p.R2459C	ENST00000278616	NM_000051.3	2459	Cgt/Tgt																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29107974	29107974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	33	331	0	ENST00000328354.6:c.715G>A	p.Glu239Lys	p.E239K	ENST00000328354	NM_007194.3	239	Gag/Aag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	23	175	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225362541	225362541	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	42	315	0	ENST00000264414.4:c.1636C>T	p.Arg546Ter	p.R546*	ENST00000264414	NM_003590.4	546	Cga/Tga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169935	32169935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142477287		P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	122	576	1	ENST00000375023.3:c.3673C>T	p.Arg1225Trp	p.R1225W	ENST00000375023	NM_004557.3	1225	Cgg/Tgg																																																																														
MED12	9968	MSKCC	GRCh37	X	70352373	70352373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	55	358	1	ENST00000374080.3:c.4400G>A	p.Arg1467Gln	p.R1467Q	ENST00000374080		1467	cGa/cAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166818	32166818	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	125	607	0	ENST00000375023.3:c.4420C>T	p.Arg1474Ter	p.R1474*	ENST00000375023	NM_004557.3	1474	Cga/Tga																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646884	23646884	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	46	352	0	ENST00000261584.4:c.983C>A	p.Ser328Tyr	p.S328Y	ENST00000261584	NM_024675.3	328	tCt/tAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29556886	29556886	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	12	154	0	ENST00000358273.4:c.2884G>T	p.Glu962Ter	p.E962*	ENST00000358273	NM_001042492.2	962	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845640	72845640	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354034		P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	104	471	0	ENST00000268489.5:c.3700G>A	p.Asp1234Asn	p.D1234N	ENST00000268489	NM_006885.3	1234	Gat/Aat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631279	176631279	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	26	195	0	ENST00000439151.2:c.1222G>T	p.Gly408Ter	p.G408*	ENST00000439151	NM_022455.4	408	Gga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685312	86685312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	40	128	1	ENST00000274376.6:c.3028C>T	p.Arg1010Ter	p.R1010*	ENST00000274376	NM_002890.2	1010	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534356	187534356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	81	409	0	ENST00000441802.2:c.9370G>A	p.Glu3124Lys	p.E3124K	ENST00000441802	NM_005245.3	3124	Gaa/Aaa																																																																														
BCL6	604	MSKCC	GRCh37	3	187449600	187449600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	64	304	1	ENST00000232014.4:c.280C>T	p.Arg94Trp	p.R94W	ENST00000232014	NM_001130845.1	94	Cgg/Tgg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682778	190682778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	11	224	0	ENST00000441310.2:c.454C>A	p.Leu152Ile	p.L152I	ENST00000441310	NM_000534.4	152	Cta/Ata																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99203950	99203950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	20	260	0	ENST00000074304.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000074304	NM_001134224.1	938	cGa/cAa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182574	99182574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	52	432	0	ENST00000074304.5:c.2377C>T	p.Arg793Ter	p.R793*	ENST00000074304	NM_001134224.1	793	Cga/Tga																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751145	57751145	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	39	230	0	ENST00000274289.3:c.1722C>A	p.Tyr574Ter	p.Y574*	ENST00000274289	NM_006622.3	574	taC/taA																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720928	176720928	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	62	298	0	ENST00000439151.2:c.6559C>T	p.Arg2187Ter	p.R2187*	ENST00000439151	NM_022455.4	2187	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687431	117687431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	30	276	0	ENST00000368508.3:c.2620G>T	p.Glu874Ter	p.E874*	ENST00000368508	NM_002944.2	874	Gaa/Taa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351980	89351980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	136	593	0	ENST00000301030.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000301030	NM_001256183.1	324	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541679	187541679	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185406112		P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	43	243	0	ENST00000441802.2:c.6061C>T	p.Arg2021Cys	p.R2021C	ENST00000441802	NM_005245.3	2021	Cgc/Tgc																																																																														
PAK7	0	MSKCC	GRCh37	20	9520141	9520141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	50	329	1	ENST00000353224.5:c.2128G>A	p.Val710Ile	p.V710I	ENST00000353224	NM_177990.2	710	Gtc/Atc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692978	89692978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	25	345	0	ENST00000371953.3:c.462C>A	p.Phe154Leu	p.F154L	ENST00000371953	NM_000314.4	154	ttC/ttA																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029461	14029461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	39	253	0	ENST00000311895.7:c.1672C>A	p.Leu558Met	p.L558M	ENST00000311895	NM_005236.2	558	Ctg/Atg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850948	63850948	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	55	349	1	ENST00000279873.7:c.1726G>T	p.Glu576Ter	p.E576*	ENST00000279873	NM_032199.2	576	Gaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471048	8471048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	15	300	2	ENST00000356435.5:c.3451C>T	p.Arg1151Cys	p.R1151C	ENST00000356435		1151	Cgc/Tgc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159157	143159157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	17	150	0	ENST00000262992.4:c.696G>T	p.Lys232Asn	p.K232N	ENST00000262992	NM_001101669.1	232	aaG/aaT																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18466940	18466940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	27	264	0	ENST00000266497.5:c.1079C>A	p.Ser360Tyr	p.S360Y	ENST00000266497		360	tCt/tAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106197518	106197518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	43	235	0	ENST00000380013.4:c.5851C>T	p.Arg1951Trp	p.R1951W	ENST00000380013	NM_001127208.2	1951	Cgg/Tgg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39542545	39542545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	77	320	0	ENST00000262039.4:c.349G>A	p.Gly117Arg	p.G117R	ENST00000262039	NM_002647.2	117	Gga/Aga																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25457176	25457176	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149095705		P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	96	446	1	ENST00000264709.3:c.2711C>T	p.Pro904Leu	p.P904L	ENST00000264709	NM_175629.2	904	cCg/cTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376306	118376306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	27	338	0	ENST00000534358.1:c.9699G>T	p.Lys3233Asn	p.K3233N	ENST00000534358	NM_005933.3	3233	aaG/aaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830631	72830631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	66	467	0	ENST00000268489.5:c.5950G>A	p.Glu1984Lys	p.E1984K	ENST00000268489	NM_006885.3	1984	Gag/Aag																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128432165	128432165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	31	213	0	ENST00000265960.3:c.281G>A	p.Arg94Gln	p.R94Q	ENST00000265960	NM_001006617.1	94	cGa/cAa																																																																														
PGR	5241	MSKCC	GRCh37	11	100933464	100933464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	35	183	0	ENST00000325455.5:c.1926C>A	p.Phe642Leu	p.F642L	ENST00000325455	NM_001202474.3	642	ttC/ttA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127349	55127349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	71	387	0	ENST00000257290.5:c.137C>A	p.Ser46Tyr	p.S46Y	ENST00000257290	NM_006206.4	46	tCt/tAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748890	43748890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201785039		P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	70	495	0	ENST00000382044.4:c.1916G>A	p.Arg639Gln	p.R639Q	ENST00000382044	NM_001141980.1	639	cGa/cAa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816896	32816896	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	53	307	1	ENST00000354258.4:c.1429-1G>T		p.X477_splice	ENST00000354258	NM_000593.5	477																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797230	45797230	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	77	540	0	ENST00000372115.3:c.1145-2A>G		p.X382_splice	ENST00000372115	NM_001048171.1	382																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942079	71942079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139442327		P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	79	588	0	ENST00000298229.2:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000298229	NM_001567.3	448	tCg/tTg																																																																														
AURKA	6790	MSKCC	GRCh37	20	54948538	54948538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	16	294	0	ENST00000312783.6:c.780G>T	p.Glu260Asp	p.E260D	ENST00000312783	NM_198436.1	260	gaG/gaT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749297	43749297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	36	397	0	ENST00000382044.4:c.1509G>T	p.Lys503Asn	p.K503N	ENST00000382044	NM_001141980.1	503	aaG/aaT																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204742	94204742	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	23	244	0	ENST00000323929.3:c.843G>T	p.Lys281Asn	p.K281N	ENST00000323929	NM_005591.3	281	aaG/aaT																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815404	32815404	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	66	487	0	ENST00000354258.4:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000354258	NM_000593.5	657	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522657	67522657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	42	243	0	ENST00000274335.5:c.154G>T	p.Glu52Ter	p.E52*	ENST00000274335		52	Gaa/Taa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026224	48026224	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	32	245	0	ENST00000234420.5:c.1102G>T	p.Glu368Ter	p.E368*	ENST00000234420	NM_000179.2	368	Gaa/Taa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341506	89341506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	90	568	0	ENST00000301030.4:c.7564G>A	p.Glu2522Lys	p.E2522K	ENST00000301030	NM_001256183.1	2522	Gag/Aag																																																																														
BARD1	580	MSKCC	GRCh37	2	215593483	215593483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139785364		P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	48	251	0	ENST00000260947.4:c.2251C>T	p.Arg751Trp	p.R751W	ENST00000260947	NM_000465.2	751	Cgg/Tgg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902586	1902586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	94	475	0	ENST00000382891.5:c.205G>A	p.Asp69Asn	p.D69N	ENST00000382891	NM_133335.3	69	Gac/Aac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629679	187629679	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	63	378	0	ENST00000441802.2:c.1303G>T	p.Glu435Ter	p.E435*	ENST00000441802	NM_005245.3	435	Gaa/Taa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170015104	170015104	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	43	385	0	ENST00000295797.4:c.1510C>T	p.Arg504Ter	p.R504*	ENST00000295797	NM_002740.5	504	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419064	419064	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	37	310	0	ENST00000399788.2:c.3283G>T	p.Glu1095Ter	p.E1095*	ENST00000399788	NM_001042603.1	1095	Gaa/Taa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995501	68995501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	24	349	1	ENST00000288368.4:c.1905G>T	p.Lys635Asn	p.K635N	ENST00000288368	NM_024870.2	635	aaG/aaT																																																																														
FAM58A	0	MSKCC	GRCh37	X	152861584	152861584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	72	580	0	ENST00000406277.2:c.168C>A	p.Phe56Leu	p.F56L	ENST00000406277	NM_152274.4	56	ttC/ttA																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709561	176709561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	20	224	0	ENST00000439151.2:c.5988C>A	p.Phe1996Leu	p.F1996L	ENST00000439151	NM_022455.4	1996	ttC/ttA																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182679086	182679086	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	13	263	0	ENST00000292782.4:c.448G>T	p.Glu150Ter	p.E150*	ENST00000292782	NM_020640.2	150	Gaa/Taa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391869	139391869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	116	755	0	ENST00000277541.6:c.6322G>A	p.Asp2108Asn	p.D2108N	ENST00000277541	NM_017617.3	2108	Gac/Aac																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054998	176054998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	20	312	0	ENST00000367669.3:c.1055C>T	p.Thr352Met	p.T352M	ENST00000367669	NM_022457.5	352	aCg/aTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5022033	5022033	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	43	348	0	ENST00000381652.3:c.46A>G	p.Thr16Ala	p.T16A	ENST00000381652	NM_004972.3	16	Acc/Gcc																																																																														
RB1	5925	MSKCC	GRCh37	13	48955568	48955568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	13	222	0	ENST00000267163.4:c.1684G>T	p.Ala562Ser	p.A562S	ENST00000267163	NM_000321.2	562	Gca/Tca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151841862	151841862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	42	220	0	ENST00000262189.6:c.14279C>T	p.Ser4760Leu	p.S4760L	ENST00000262189	NM_170606.2	4760	tCg/tTg																																																																														
BLM	641	MSKCC	GRCh37	15	91347493	91347493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	51	385	0	ENST00000355112.3:c.3655C>A	p.Leu1219Ile	p.L1219I	ENST00000355112	NM_000057.2	1219	Ctt/Att																																																																														
KDR	3791	MSKCC	GRCh37	4	55970907	55970907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	51	383	0	ENST00000263923.4:c.1890G>T	p.Lys630Asn	p.K630N	ENST00000263923	NM_002253.2	630	aaG/aaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829684	72829684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	70	455	0	ENST00000268489.5:c.6897G>T	p.Lys2299Asn	p.K2299N	ENST00000268489	NM_006885.3	2299	aaG/aaT																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115267948	115267948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	22	227	0	ENST00000438362.2:c.1785C>A	p.Phe595Leu	p.F595L	ENST00000438362	NM_001242891.1	595	ttC/ttA																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971145	13971145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	38	215	0	ENST00000405192.2:c.784G>A	p.Asp262Asn	p.D262N	ENST00000405192	NM_001163147.1	262	Gat/Aat																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976421	18976421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	92	636	1	ENST00000262803.5:c.3071G>A	p.Arg1024His	p.R1024H	ENST00000262803	NM_002911.3	1024	cGc/cAc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159059	143159059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	20	200	0	ENST00000262992.4:c.794C>A	p.Pro265His	p.P265H	ENST00000262992	NM_001101669.1	265	cCt/cAt																																																																														
PGR	5241	MSKCC	GRCh37	11	100912693	100912693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	35	260	0	ENST00000325455.5:c.2629C>A	p.Leu877Ile	p.L877I	ENST00000325455	NM_001202474.3	877	Ctt/Att																																																																														
YES1	7525	MSKCC	GRCh37	18	739800	739800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	35	265	0	ENST00000314574.4:c.1072G>A	p.Asp358Asn	p.D358N	ENST00000314574	NM_005433.3	358	Gat/Aat																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112942506	112942506	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	22	237	0	ENST00000351677.2:c.1720G>T	p.Glu574Ter	p.E574*	ENST00000351677	NM_002834.3	574	Gaa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	42035031	42035031	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	63	418	0	ENST00000219905.7:c.4873G>T	p.Glu1625Ter	p.E1625*	ENST00000219905	NM_001164273.1	1625	Gaa/Taa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255113	16255113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	59	272	0	ENST00000375759.3:c.2378A>C	p.Lys793Thr	p.K793T	ENST00000375759	NM_015001.2	793	aAa/aCa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255152	16255152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	23	291	0	ENST00000375759.3:c.2417G>T	p.Arg806Ile	p.R806I	ENST00000375759	NM_015001.2	806	aGa/aTa																																																																														
MPL	4352	MSKCC	GRCh37	1	43805073	43805073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	66	492	0	ENST00000372470.3:c.523G>T	p.Asp175Tyr	p.D175Y	ENST00000372470	NM_005373.2	175	Gat/Tat																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400936	72400936	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	28	215	0	ENST00000357731.5:c.235T>G	p.Phe79Val	p.F79V	ENST00000357731	NM_173808.2	79	Ttt/Gtt																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736581	85736581	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	18	120	0	ENST00000370580.1:c.66A>C	p.Glu22Asp	p.E22D	ENST00000370580	NM_003921.4	22	gaA/gaC																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724427	162724427	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	45	344	0	ENST00000367921.3:c.199G>T	p.Glu67Ter	p.E67*	ENST00000367921	NM_006182.2	67	Gaa/Taa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63816933	63816933	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	26	152	0	ENST00000279873.7:c.904A>C	p.Lys302Gln	p.K302Q	ENST00000279873	NM_032199.2	302	Aaa/Caa																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724495	112724495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	30	377	0	ENST00000369452.4:c.379G>A	p.Glu127Lys	p.E127K	ENST00000369452	NM_007373.3	127	Gaa/Aaa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575565	64575565	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	56	351	1	ENST00000337652.1:c.467A>C	p.Lys156Thr	p.K156T	ENST00000337652	NM_130803.2	156	aAa/aCa																																																																														
CCND1	595	MSKCC	GRCh37	11	69457887	69457887	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	102	413	0	ENST00000227507.2:c.287A>C	p.Lys96Thr	p.K96T	ENST00000227507	NM_053056.2	96	aAg/aCg																																																																														
SESN3	143686	MSKCC	GRCh37	11	94924732	94924732	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	79	423	0	ENST00000536441.1:c.178A>C	p.Asn60His	p.N60H	ENST00000536441	NM_144665.3	60	Aac/Cac																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195625	102195625	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	32	287	0	ENST00000263464.3:c.385G>T	p.Glu129Ter	p.E129*	ENST00000263464	NM_001165.4	129	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108201113	108201113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	38	245	0	ENST00000278616.4:c.7480A>C	p.Asn2494His	p.N2494H	ENST00000278616	NM_000051.3	2494	Aat/Cat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118366528	118366528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	43	292	0	ENST00000534358.1:c.5477T>G	p.Ile1826Ser	p.I1826S	ENST00000534358	NM_005933.3	1826	aTc/aGc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376047	118376047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	56	343	0	ENST00000534358.1:c.9440C>A	p.Ser3147Tyr	p.S3147Y	ENST00000534358	NM_005933.3	3147	tCt/tAt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125499310	125499310	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	21	335	0	ENST00000428830.2:c.379A>C	p.Thr127Pro	p.T127P	ENST00000428830	NM_001114121.2	127	Act/Cct																																																																														
KDM5A	5927	MSKCC	GRCh37	12	438129	438129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	59	269	0	ENST00000399788.2:c.1840G>A	p.Glu614Lys	p.E614K	ENST00000399788	NM_001042603.1	614	Gag/Aag																																																																														
CCND2	894	MSKCC	GRCh37	12	4409087	4409087	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	71	248	0	ENST00000261254.3:c.782A>T	p.Tyr261Phe	p.Y261F	ENST00000261254	NM_001759.3	261	tAc/tTc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21639480	21639480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	12	189	0	ENST00000421138.2:c.434A>G	p.Glu145Gly	p.E145G	ENST00000421138		145	gAa/gGa																																																																														
POLE	5426	MSKCC	GRCh37	12	133202762	133202762	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	95	454	0	ENST00000320574.5:c.6472T>C	p.Cys2158Arg	p.C2158R	ENST00000320574	NM_006231.2	2158	Tgc/Cgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133236088	133236088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	76	295	0	ENST00000320574.5:c.3068A>G	p.Asn1023Ser	p.N1023S	ENST00000320574	NM_006231.2	1023	aAc/aGc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28901649	28901649	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	33	286	0	ENST00000282397.4:c.2746A>C	p.Asn916His	p.N916H	ENST00000282397	NM_002019.4	916	Aat/Cat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911400	32911400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	14	256	0	ENST00000380152.3:c.2908G>T	p.Asp970Tyr	p.D970Y	ENST00000380152		970	Gat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914700	32914700	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	22	315	0	ENST00000380152.3:c.6208G>T	p.Glu2070Ter	p.E2070*	ENST00000380152		2070	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937596	32937596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	64	348	0	ENST00000380152.3:c.8257C>A	p.Leu2753Ile	p.L2753I	ENST00000380152		2753	Ctt/Att																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281527	49281527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	75	460	0	ENST00000282018.3:c.574C>A	p.Leu192Ile	p.L192I	ENST00000282018	NM_020377.2	192	Ctc/Atc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81558880	81558880	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	38	271	0	ENST00000298171.2:c.473T>G	p.Ile158Ser	p.I158S	ENST00000298171	NM_000369.2	158	aTt/aGt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81574731	81574731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	25	153	0	ENST00000298171.2:c.627G>T	p.Lys209Asn	p.K209N	ENST00000298171	NM_000369.2	209	aaG/aaT																																																																														
MGA	23269	MSKCC	GRCh37	15	42059465	42059465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	70	272	0	ENST00000219905.7:c.9185C>A	p.Ser3062Tyr	p.S3062Y	ENST00000219905	NM_001164273.1	3062	tCt/tAt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680785	88680785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	81	456	0	ENST00000360948.2:c.472G>A	p.Glu158Lys	p.E158K	ENST00000360948	NM_001012338.2	158	Gag/Aag																																																																														
BLM	641	MSKCC	GRCh37	15	91292926	91292926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	42	336	0	ENST00000355112.3:c.428C>A	p.Ser143Tyr	p.S143Y	ENST00000355112	NM_000057.2	143	tCt/tAt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3644457	3644457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	115	483	0	ENST00000294008.3:c.2157G>C	p.Gln719His	p.Q719H	ENST00000294008	NM_032444.2	719	caG/caC																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832863	3832863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	56	314	0	ENST00000262367.5:c.1395G>T	p.Gln465His	p.Q465H	ENST00000262367	NM_004380.2	465	caG/caT																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020582	14020582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	25	233	1	ENST00000311895.7:c.553C>A	p.Leu185Ile	p.L185I	ENST00000311895	NM_005236.2	185	Ctt/Att																																																																														
NUP93	9688	MSKCC	GRCh37	16	56792557	56792557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	61	314	0	ENST00000308159.5:c.287C>T	p.Thr96Ile	p.T96I	ENST00000308159	NM_014669.4	96	aCt/aTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828693	72828693	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145288413		P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	94	409	0	ENST00000268489.5:c.7888G>A	p.Asp2630Asn	p.D2630N	ENST00000268489	NM_006885.3	2630	Gac/Aac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838134	89838134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	111	433	0	ENST00000389301.3:c.2103G>T	p.Lys701Asn	p.K701N	ENST00000389301	NM_000135.2	701	aaG/aaT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968325	15968325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	19	186	0	ENST00000268712.3:c.4960G>T	p.Asp1654Tyr	p.D1654Y	ENST00000268712	NM_006311.3	1654	Gac/Tac																																																																														
NF1	4763	MSKCC	GRCh37	17	29527456	29527456	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	28	304	0	ENST00000358273.4:c.905G>C	p.Ser302Thr	p.S302T	ENST00000358273	NM_001042492.2	302	aGt/aCt																																																																														
NF1	4763	MSKCC	GRCh37	17	29677228	29677228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	43	248	0	ENST00000358273.4:c.7349G>A	p.Arg2450Gln	p.R2450Q	ENST00000358273	NM_001042492.2	2450	cGa/cAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618712	37618712	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	68	371	0	ENST00000447079.4:c.388A>C	p.Lys130Gln	p.K130Q	ENST00000447079	NM_015083.1	130	Aaa/Caa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884184	37884184	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	89	469	0	ENST00000269571.5:c.3655A>G	p.Asn1219Asp	p.N1219D	ENST00000269571		1219	Aac/Gac																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59770874	59770874	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	16	181	0	ENST00000259008.2:c.2493-1G>T		p.X831_splice	ENST00000259008	NM_032043.2	831																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530044	63530044	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	67	358	0	ENST00000307078.5:c.2391A>C	p.Lys797Asn	p.K797N	ENST00000307078	NM_004655.3	797	aaA/aaC																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117539	70117539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	55	408	0	ENST00000245479.2:c.7C>A	p.Leu3Ile	p.L3I	ENST00000245479	NM_000346.3	3	Ctc/Atc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39613831	39613831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	12	287	0	ENST00000262039.4:c.1749G>T	p.Met583Ile	p.M583I	ENST00000262039	NM_002647.2	583	atG/atT																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39623727	39623727	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	26	231	0	ENST00000262039.4:c.2134A>C	p.Asn712His	p.N712H	ENST00000262039	NM_002647.2	712	Aat/Cat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298769	15298769	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	143	647	0	ENST00000263388.2:c.1529A>C	p.Glu510Ala	p.E510A	ENST00000263388	NM_000435.2	510	gAa/gCa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954666	17954666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	120	603	0	ENST00000458235.1:c.228G>T	p.Glu76Asp	p.E76D	ENST00000458235	NM_000215.3	76	gaG/gaT																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266855	18266855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	107	574	0	ENST00000222254.8:c.166T>C	p.Trp56Arg	p.W56R	ENST00000222254	NM_005027.3	56	Tgg/Cgg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257155	19257155	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	81	423	2	ENST00000162023.5:c.808T>G	p.Leu270Val	p.L270V	ENST00000162023		270	Ttg/Gtg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211396	36211396	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	62	410	0	ENST00000222270.7:c.1147G>T	p.Glu383Ter	p.E383*	ENST00000222270	NM_014727.1	383	Gaa/Taa																																																																														
AXL	558	MSKCC	GRCh37	19	41748878	41748878	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	73	514	0	ENST00000301178.4:c.1403C>A	p.Ala468Asp	p.A468D	ENST00000301178	NM_021913.4	468	gCt/gAt																																																																														
ALK	238	MSKCC	GRCh37	2	29462607	29462607	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	78	584	0	ENST00000389048.3:c.2294T>C	p.Leu765Pro	p.L765P	ENST00000389048	NM_004304.4	765	cTg/cCg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047272	128047272	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	33	276	0	ENST00000285398.2:c.650A>G	p.Lys217Arg	p.K217R	ENST00000285398	NM_000122.1	217	aAa/aGa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017153	31017153	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	50	167	0	ENST00000375687.4:c.484A>C	p.Lys162Gln	p.K162Q	ENST00000375687	NM_015338.5	162	Aag/Cag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400125	41400125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	77	415	0	ENST00000373198.4:c.634C>A	p.Gln212Lys	p.Q212K	ENST00000373198	NM_133170.3	212	Cag/Aag																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259394	36259394	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	76	474	1	ENST00000300305.3:c.98-1G>T		p.X33_splice	ENST00000300305		33																																																																															
ERG	2078	MSKCC	GRCh37	21	39795347	39795347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	73	416	0	ENST00000288319.7:c.373G>T	p.Val125Phe	p.V125F	ENST00000288319	NM_182918.3	125	Gtt/Ttt																																																																														
EP300	2033	MSKCC	GRCh37	22	41536201	41536201	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	60	399	0	ENST00000263253.7:c.1818A>C	p.Glu606Asp	p.E606D	ENST00000263253	NM_001429.3	606	gaA/gaC																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458242	12458242	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	46	277	0	ENST00000287820.6:c.859G>T	p.Glu287Ter	p.E287*	ENST00000287820	NM_015869.4	287	Gaa/Taa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626709	12626709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	49	346	0	ENST00000251849.4:c.1580T>C	p.Phe527Ser	p.F527S	ENST00000251849	NM_002880.3	527	tTc/tCc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162426	47162426	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	41	310	0	ENST00000409792.3:c.3700G>T	p.Glu1234Ter	p.E1234*	ENST00000409792	NM_014159.6	1234	Gaa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162482	47162482	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	16	274	0	ENST00000409792.3:c.3644A>C	p.Lys1215Thr	p.K1215T	ENST00000409792	NM_014159.6	1215	aAg/aCg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259655	89259655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	27	182	1	ENST00000336596.2:c.799G>T	p.Gly267Cys	p.G267C	ENST00000336596	NM_005233.5	267	Ggt/Tgt																																																																														
ATR	545	MSKCC	GRCh37	3	142266616	142266616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	25	266	0	ENST00000350721.4:c.3308G>T	p.Ser1103Ile	p.S1103I	ENST00000350721	NM_001184.3	1103	aGt/aTt																																																																														
ATR	545	MSKCC	GRCh37	3	142268428	142268428	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	25	285	0	ENST00000350721.4:c.3064A>C	p.Asn1022His	p.N1022H	ENST00000350721	NM_001184.3	1022	Aat/Cat																																																																														
ATR	545	MSKCC	GRCh37	3	142278198	142278198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	31	324	1	ENST00000350721.4:c.1627G>T	p.Val543Leu	p.V543L	ENST00000350721	NM_001184.3	543	Gtg/Ttg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998123	169998123	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	61	418	0	ENST00000295797.4:c.814C>T	p.Arg272Ter	p.R272*	ENST00000295797	NM_002740.5	272	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178941923	178941923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	34	295	0	ENST00000263967.3:c.2242C>A	p.Leu748Ile	p.L748I	ENST00000263967	NM_006218.2	748	Cta/Ata																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185200153	185200153	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	44	327	0	ENST00000265026.3:c.2810A>C	p.Gln937Pro	p.Q937P	ENST00000265026	NM_004721.4	937	cAg/cCg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807302	1807302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	98	542	0	ENST00000260795.2:c.1551G>T	p.Lys517Asn	p.K517N	ENST00000260795		517	aaG/aaT																																																																														
WHSC1	0	MSKCC	GRCh37	4	1936949	1936949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	67	388	0	ENST00000382891.5:c.1634C>A	p.Pro545His	p.P545H	ENST00000382891	NM_133335.3	545	cCc/cAc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1953960	1953960	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	97	537	0	ENST00000382891.5:c.2137+2C>G		p.X713_splice	ENST00000382891	NM_133335.3	713																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133762	55133762	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	63	319	0	ENST00000257290.5:c.975A>T	p.Glu325Asp	p.E325D	ENST00000257290	NM_006206.4	325	gaA/gaT																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144528	55144528	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	33	299	0	ENST00000257290.5:c.2003-1G>A		p.X668_splice	ENST00000257290	NM_006206.4	668																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143003209	143003209	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	58	279	0	ENST00000262992.4:c.2617A>G	p.Ile873Val	p.I873V	ENST00000262992	NM_001101669.1	873	Atc/Gtc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007376	143007376	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	12	169	0	ENST00000262992.4:c.2408A>C	p.Lys803Thr	p.K803T	ENST00000262992	NM_001101669.1	803	aAa/aCa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244200	153244200	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	50	284	0	ENST00000281708.4:c.1957A>G	p.Thr653Ala	p.T653A	ENST00000281708	NM_033632.3	653	Acg/Gcg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554912	187554912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	60	315	0	ENST00000441802.2:c.4249C>A	p.Leu1417Ile	p.L1417I	ENST00000441802	NM_005245.3	1417	Ctt/Att																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753981	57753981	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	31	204	0	ENST00000274289.3:c.643G>T	p.Glu215Ter	p.E215*	ENST00000274289	NM_006622.3	215	Gaa/Taa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754280	57754280	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	51	300	0	ENST00000274289.3:c.571T>G	p.Ser191Ala	p.S191A	ENST00000274289	NM_006622.3	191	Tct/Gct																																																																														
APC	324	MSKCC	GRCh37	5	112111328	112111328	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	10	96	0	ENST00000257430.4:c.425C>A	p.Ser142Ter	p.S142*	ENST00000257430	NM_000038.5	142	tCa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112176050	112176050	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	28	225	0	ENST00000257430.4:c.4759T>A	p.Ser1587Thr	p.S1587T	ENST00000257430	NM_000038.5	1587	Tca/Aca																																																																														
RAD50	10111	MSKCC	GRCh37	5	131927617	131927617	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	15	198	0	ENST00000265335.6:c.1684G>T	p.Glu562Ter	p.E562*	ENST00000265335		562	Gaa/Taa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460454	149460454	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	113	517	0	ENST00000286301.3:c.183C>A	p.Tyr61Ter	p.Y61*	ENST00000286301	NM_005211.3	61	taC/taA																																																																														
NPM1	4869	MSKCC	GRCh37	5	170819917	170819917	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	15	202	0	ENST00000296930.5:c.460-1G>T		p.X154_splice	ENST00000296930	NM_002520.6	154																																																																															
FLT4	2324	MSKCC	GRCh37	5	180076524	180076524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	18	141	0	ENST00000261937.6:c.22T>C	p.Cys8Arg	p.C8R	ENST00000261937	NM_182925.4	8	Tgc/Cgc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671599	30671599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	73	432	0	ENST00000376406.3:c.5361G>T	p.Gln1787His	p.Q1787H	ENST00000376406	NM_014641.2	1787	caG/caT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185829	32185829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	88	555	0	ENST00000375023.3:c.1567C>A	p.Leu523Met	p.L523M	ENST00000375023	NM_004557.3	523	Ctg/Atg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797276	32797276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	96	568	0	ENST00000374899.4:c.1833G>T	p.Gln611His	p.Q611H	ENST00000374899	NM_018833.2	611	caG/caT																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286887	33286887	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	92	530	0	ENST00000374542.5:c.2050A>G	p.Thr684Ala	p.T684A	ENST00000374542	NM_001141970.1	684	Acg/Gcg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196141	138196141	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	63	231	0	ENST00000237289.4:c.455T>G	p.Phe152Cys	p.F152C	ENST00000237289	NM_001270507.1	152	tTt/tGt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099757	157099757	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	37	193	0	ENST00000346085.5:c.694A>C	p.Asn232His	p.N232H	ENST00000346085	NM_020732.3	232	Aat/Cat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268989	55268989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	107	425	1	ENST00000275493.2:c.3055C>A	p.Pro1019Thr	p.P1019T	ENST00000275493	NM_005228.3	1019	Cca/Aca																																																																														
HGF	3082	MSKCC	GRCh37	7	81350125	81350125	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	23	295	0	ENST00000222390.5:c.1207T>G	p.Leu403Val	p.L403V	ENST00000222390	NM_000601.4	403	Tta/Gta																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508329	106508329	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	45	331	0	ENST00000359195.3:c.323A>T	p.Glu108Val	p.E108V	ENST00000359195	NM_002649.2	108	gAg/gTg																																																																														
MET	4233	MSKCC	GRCh37	7	116397722	116397722	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	53	327	0	ENST00000397752.3:c.1996T>C	p.Tyr666His	p.Y666H	ENST00000397752	NM_000245.2	666	Tac/Cac																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540127	23540127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	49	309	0	ENST00000380871.4:c.276G>T	p.Glu92Asp	p.E92D	ENST00000380871	NM_006167.3	92	gaG/gaT																																																																														
LYN	4067	MSKCC	GRCh37	8	56910937	56910937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	94	368	0	ENST00000519728.1:c.1083G>T	p.Lys361Asn	p.K361N	ENST00000519728	NM_002350.3	361	aaG/aaT																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970918	70970918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	94	381	0	ENST00000276594.2:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000276594	NM_024504.3	448	cGg/cAg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117875397	117875397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	34	250	1	ENST00000297338.2:c.246C>A	p.Phe82Leu	p.F82L	ENST00000297338	NM_006265.2	82	ttC/ttA																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5557740	5557740	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	34	235	1	ENST00000397747.3:c.754T>C	p.Tyr252His	p.Y252H	ENST00000397747	NM_025239.3	252	Tat/Cat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376091	8376091	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	29	153	0	ENST00000356435.5:c.4507-1G>T		p.X1503_splice	ENST00000356435		1503																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8484375	8484375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	25	196	0	ENST00000356435.5:c.3157C>A	p.Leu1053Ile	p.L1053I	ENST00000356435		1053	Ctt/Att																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500939	8500939	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	26	309	0	ENST00000356435.5:c.1943A>C	p.Lys648Thr	p.K648T	ENST00000356435		648	aAg/aCg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87339247	87339247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	29	331	0	ENST00000277120.3:c.829G>T	p.Asp277Tyr	p.D277Y	ENST00000277120		277	Gat/Tat																																																																														
ABL1	25	MSKCC	GRCh37	9	133730365	133730365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	76	387	0	ENST00000318560.5:c.431G>T	p.Gly144Val	p.G144V	ENST00000318560	NM_005157.4	144	gGg/gTg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137321058	137321058	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	81	534	0	ENST00000481739.1:c.1015A>G	p.Ser339Gly	p.S339G	ENST00000481739	NM_002957.4	339	Agc/Ggc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349905	70349905	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	80	566	0	ENST00000374080.3:c.3888C>A	p.Cys1296Ter	p.C1296*	ENST00000374080		1296	tgC/tgA																																																																														
MED12	9968	MSKCC	GRCh37	X	70354640	70354640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	77	439	0	ENST00000374080.3:c.4805C>T	p.Ser1602Leu	p.S1602L	ENST00000374080		1602	tCg/tTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76938149	76938149	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	34	403	0	ENST00000373344.5:c.2599A>C	p.Asn867His	p.N867H	ENST00000373344	NM_000489.3	867	Aat/Cat																																																																														
ATRX	546	MSKCC	GRCh37	X	76972659	76972659	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	38	320	0	ENST00000373344.5:c.82G>T	p.Glu28Ter	p.E28*	ENST00000373344	NM_000489.3	28	Gaa/Taa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197893	123197893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	10	225	0	ENST00000218089.9:c.2017C>A	p.Leu673Met	p.L673M	ENST00000218089	NM_001042749.1	673	Ctg/Atg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123202434	123202434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	12	230	0	ENST00000218089.9:c.2286G>T	p.Lys762Asn	p.K762N	ENST00000218089	NM_001042749.1	762	aaG/aaT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215241	123215241	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	23	237	0	ENST00000218089.9:c.2787A>C	p.Glu929Asp	p.E929D	ENST00000218089	NM_001042749.1	929	gaA/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	76	692	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	34	523	1	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371806	55371806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	28	290	0	ENST00000297316.4:c.496G>A	p.Ala166Thr	p.A166T	ENST00000297316	NM_022454.3	166	Gcg/Acg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78831654	78831654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	97	788	1	ENST00000306801.3:c.1463G>A	p.Arg488Gln	p.R488Q	ENST00000306801	NM_020761.2	488	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	591	600	0	ENST00000269305.4:c.827C>G	p.Ala276Gly	p.A276G	ENST00000269305	NM_001126112.2	276	gCc/gGc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458911	120458911	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0049075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	84	594	0	ENST00000256646.2:c.6434C>G	p.Ser2145Ter	p.S2145*	ENST00000256646	NM_024408.3	2145	tCa/tGa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912001	32912007	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCATC	CCCCATC	-			P-0049075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	161	472	0	ENST00000380152.3:c.3509_3515del	p.Ala1170GlyfsTer5	p.A1170Gfs*5	ENST00000380152		1170	gCCCCATCg/gg																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2636743	2636748	+	inframe_deletion	In_Frame_Del	DEL	TCAGCC	TCAGCC	-			P-0049075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	118	534	1	ENST00000342085.4:c.1194_1199del	p.Ala399_Ser400del	p.A399_S400del	ENST00000342085	NM_002613.4	398	TCAGCC/-																																																																														
ALK	238	MSKCC	GRCh37	2	29551239	29551239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	108	595	0	ENST00000389048.3:c.1391G>A	p.Gly464Glu	p.G464E	ENST00000389048	NM_004304.4	464	gGa/gAa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1918626	1918626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	81	348	0	ENST00000382891.5:c.789C>G	p.His263Gln	p.H263Q	ENST00000382891	NM_133335.3	263	caC/caG																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003247	143003247	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	96	387	0	ENST00000262992.4:c.2579T>C	p.Ile860Thr	p.I860T	ENST00000262992	NM_001101669.1	860	aTc/aCc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739710	41739710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	117	611	0	ENST00000242208.4:c.263G>C	p.Arg88Thr	p.R88T	ENST00000242208	NM_002192.2	88	aGa/aCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	58	161	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	167	635	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250867	153250867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	79	220	0	ENST00000281708.4:c.1193C>T	p.Ser398Phe	p.S398F	ENST00000281708	NM_033632.3	398	tCt/tTt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001523	150001523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	98	259	0	ENST00000253339.5:c.2081G>A	p.Arg694His	p.R694H	ENST00000253339		694	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023141	27023143	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0049077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	10	73	0	ENST00000324856.7:c.258_260del	p.Gly87del	p.G87del	ENST00000324856	NM_006015.4	83	GGC/-																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447263	49447263	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	208	588	1	ENST00000301067.7:c.835T>C	p.Cys279Arg	p.C279R	ENST00000301067	NM_003482.3	279	Tgc/Cgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351743	89351743	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	204	714	0	ENST00000301030.4:c.1207T>A	p.Ser403Thr	p.S403T	ENST00000301030	NM_001256183.1	403	Tcc/Acc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933397	49933398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0049077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	128	764	0	ENST00000296474.3:c.2791_2792dup	p.Leu931PhefsTer6	p.L931Ffs*6	ENST00000296474	NM_002447.2	931	ttg/ttTTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	80149984	80149984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	65	129	0	ENST00000265081.6:c.2849G>C	p.Ser950Thr	p.S950T	ENST00000265081	NM_002439.4	950	aGt/aCt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	349	697	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0049079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	196	428	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602878	10602878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	470	795	0	ENST00000171111.5:c.700C>T	p.Arg234Trp	p.R234W	ENST00000171111	NM_203500.1	234	Cgg/Tgg																																																																														
RET	5979	MSKCC	GRCh37	10	43619203	43619203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	149	558	0	ENST00000355710.3:c.2886C>A	p.Asn962Lys	p.N962K	ENST00000355710	NM_020975.4	962	aaC/aaA																																																																														
TET2	54790	MSKCC	GRCh37	4	106157183	106157183	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	68	337	0	ENST00000380013.4:c.2084T>A	p.Met695Lys	p.M695K	ENST00000380013	NM_001127208.2	695	aTg/aAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069662	69069662	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	134	374	0	ENST00000288368.4:c.4337A>C	p.Gln1446Pro	p.Q1446P	ENST00000288368	NM_024870.2	1446	cAg/cCg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	182	425	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	394	516	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62305428	62305428	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201365106		P-0049087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	452	588	5	ENST00000508582.2:c.973G>A	p.Ala325Thr	p.A325T	ENST00000508582		325	Gcg/Acg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246092	46246092	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	57	267	0	ENST00000334344.6:c.4186C>T	p.Gln1396Ter	p.Q1396*	ENST00000334344	NM_152641.2	1396	Caa/Taa																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266793	18266793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	121	322	2	ENST00000222254.8:c.104G>A	p.Arg35Gln	p.R35Q	ENST00000222254	NM_005027.3	35	cGg/cAg																																																																														
RARA	5914	MSKCC	GRCh37	17	38512384	38512384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	301	290	1	ENST00000254066.5:c.1295G>A	p.Arg432Gln	p.R432Q	ENST00000254066	NM_000964.3	432	cGg/cAg																																																																														
TET1	80312	MSKCC	GRCh37	10	70426934	70426934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	228	342	2	ENST00000373644.4:c.4594C>T	p.Arg1532Trp	p.R1532W	ENST00000373644	NM_030625.2	1532	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428192	49428192	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0049087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	240	555	0	ENST00000301067.7:c.10507+1G>C		p.X3503_splice	ENST00000301067	NM_003482.3	3503																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	108	469	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	57	655	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0049088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	21	208	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
ETV1	2115	MSKCC	GRCh37	7	14017099	14017099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	30	220	0	ENST00000405192.2:c.188T>C	p.Val63Ala	p.V63A	ENST00000405192	NM_001163147.1	63	gTa/gCa																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	19	350	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	13	293	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057947	27057948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	40	336	0	ENST00000324856.7:c.1656dupA	p.Gln553ThrfsTer70	p.Q553Tfs*70	ENST00000324856	NM_006015.4	552	tca/tcAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	166	318	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	178	658	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440430	49440431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	107	510	0	ENST00000301067.7:c.4379dupC	p.Leu1461ThrfsTer30	p.L1461Tfs*30	ENST00000301067	NM_003482.3	1460	cca/ccCa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851075	63851075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	101	395	0	ENST00000279873.7:c.1853C>A	p.Ala618Asp	p.A618D	ENST00000279873	NM_032199.2	618	gCc/gAc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037455	12037463	+	inframe_deletion	In_Frame_Del	DEL	CAAAGAATC	CAAAGAATC	-			P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	175	306	0	ENST00000396373.4:c.1090_1098del	p.Glu364_Lys366del	p.E364_K366del	ENST00000396373	NM_001987.4	362	gaCAAAGAATCc/gac																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422188	81422188	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	92	311	0	ENST00000298171.2:c.164A>G	p.Gln55Arg	p.Q55R	ENST00000298171	NM_000369.2	55	cAg/cGg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89807275	89807275	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	68	242	0	ENST00000389301.3:c.3766-1G>A		p.X1256_splice	ENST00000389301	NM_000135.2	1256																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713385	40713385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs180871064		P-0049090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	162	463	1	ENST00000373198.4:c.4130G>A	p.Arg1377Gln	p.R1377Q	ENST00000373198	NM_133170.3	1377	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	442	511	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	413	518	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	558	310	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	558	310	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106489	27106489	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	437	491	1	ENST00000324856.7:c.6100G>T	p.Glu2034Ter	p.E2034*	ENST00000324856	NM_006015.4	2034	Gag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610364	10610364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	678	683	1	ENST00000171111.5:c.346C>T	p.Arg116Trp	p.R116W	ENST00000171111	NM_203500.1	116	Cgg/Tgg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098895	178098900	+	inframe_deletion	In_Frame_Del	DEL	TTTTTC	TTTTTC	-			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	168	314	0	ENST00000397062.3:c.145_150del	p.Glu49_Lys50del	p.E49_K50del	ENST00000397062	NM_006164.4	49	GAAAAA/-																																																																														
CUL3	8452	MSKCC	GRCh37	2	225365186	225365186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	352	225	0	ENST00000264414.4:c.1504G>A	p.Asp502Asn	p.D502N	ENST00000264414	NM_003590.4	502	Gat/Aat																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376772	31376772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	485	483	0	ENST00000328111.2:c.767C>G	p.Ser256Cys	p.S256C	ENST00000328111	NM_006892.3	256	tCt/tGt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265450	46265450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	35	219	0	ENST00000371998.3:c.2320A>G	p.Ile774Val	p.I774V	ENST00000371998		774	Att/Gtt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162773	47162774	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	70	299	0	ENST00000409792.3:c.3352_3353delinsTT	p.Glu1118Leu	p.E1118L	ENST00000409792	NM_014159.6	1118	GAa/TTa																																																																														
RHEB	6009	MSKCC	GRCh37	7	151216560	151216560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	190	136	0	ENST00000262187.5:c.38G>A	p.Gly13Asp	p.G13D	ENST00000262187	NM_005614.3	13	gGc/gAc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30132931	30132933	+	frameshift_variant	Frame_Shift_Del	DEL	TAG	TAG	C			P-0049091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	423	426	0	ENST00000331968.5:c.668_670delinsG	p.Ser223CysfsTer5	p.S223Cfs*5	ENST00000331968	NM_002742.2	223	tCTAca/tGca																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0049096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	45	406	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
MSI2	124540	MSKCC	GRCh37	17	55693370	55693370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	70	543	1	ENST00000284073.2:c.577C>T	p.Pro193Ser	p.P193S	ENST00000284073	NM_138962.2	193	Cca/Tca																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923440	9923440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	46	438	0	ENST00000330684.3:c.1847C>T	p.Ser616Phe	p.S616F	ENST00000330684	NM_001134407.1	616	tCc/tTc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745566	162745566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	49	345	0	ENST00000367921.3:c.1981G>A	p.Asp661Asn	p.D661N	ENST00000367921	NM_006182.2	661	Gat/Aat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911343	32911343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	53	361	0	ENST00000380152.3:c.2851C>T	p.Leu951Phe	p.L951F	ENST00000380152		951	Ctt/Ttt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	148	419	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696730	47696730	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	82	275	0	ENST00000347630.2:c.218C>G	p.Pro73Arg	p.P73R	ENST00000347630	NM_001007230.1	73	cCc/cGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157470057	157470057	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	101	357	0	ENST00000346085.5:c.2851C>T	p.Gln951Ter	p.Q951*	ENST00000346085	NM_020732.3	951	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107082	27107088	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGG	GCGGCGG	-			P-0049099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	393	421	1	ENST00000324856.7:c.6695_6701del	p.Arg2232LeufsTer33	p.R2232Lfs*33	ENST00000324856	NM_006015.4	2231	atGCGGCGG/at																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0049126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	105	305	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	37	302	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983060	201983060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	145	605	0	ENST00000359651.3:c.909C>A	p.Phe303Leu	p.F303L	ENST00000359651		303	ttC/ttA																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198262739	198262739	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	40	348	0	ENST00000335508.6:c.3236A>G	p.Asn1079Ser	p.N1079S	ENST00000335508	NM_012433.2	1079	aAc/aGc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912343	32912343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	27	284	0	ENST00000380152.3:c.3851G>T	p.Ser1284Ile	p.S1284I	ENST00000380152		1284	aGt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	150	691	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210419	36210419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	129	557	1	ENST00000222270.7:c.412C>T	p.Arg138Cys	p.R138C	ENST00000222270	NM_014727.1	138	Cgc/Tgc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912898	50912898	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	63	781	1	ENST00000440232.2:c.2129A>G	p.Lys710Arg	p.K710R	ENST00000440232	NM_002691.3	710	aAg/aGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713458	40713458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	108	595	0	ENST00000373198.4:c.4057C>T	p.His1353Tyr	p.H1353Y	ENST00000373198	NM_133170.3	1353	Cac/Tac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176719148	176719148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	35	210	0	ENST00000439151.2:c.6452A>G	p.Lys2151Arg	p.K2151R	ENST00000439151	NM_022455.4	2151	aAg/aGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	39	474	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0049186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	24	707	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0049191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	271	632	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	140	431	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0049191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	168	247	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
ATM	472	MSKCC	GRCh37	11	108235925	108235925	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	77	364	0	ENST00000278616.4:c.8967A>C	p.Gln2989His	p.Q2989H	ENST00000278616	NM_000051.3	2989	caA/caC																																																																														
NPM1	4869	MSKCC	GRCh37	5	170827859	170827859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	11	186	0	ENST00000296930.5:c.599C>T	p.Pro200Leu	p.P200L	ENST00000296930	NM_002520.6	200	cCa/cTa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26828881	26828881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	105	385	0	ENST00000381527.3:c.103G>A	p.Val35Ile	p.V35I	ENST00000381527	NM_001260.1	35	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	158	549	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	102	828	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980413	1980413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	107	785	1	ENST00000382891.5:c.3875C>T	p.Ser1292Leu	p.S1292L	ENST00000382891	NM_133335.3	1292	tCg/tTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	88	332	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	64	267	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371732	55371732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	100	519	0	ENST00000297316.4:c.422G>A	p.Arg141Gln	p.R141Q	ENST00000297316	NM_022454.3	141	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	250	768	7	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	124	400	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	70	336	1	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	103	350	2	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81934239	81934239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	45	708	1	ENST00000359376.3:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000359376	NM_002661.3	406	Gag/Aag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	198	521	2	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054630	5054630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	65	354	0	ENST00000381652.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000381652	NM_004972.3	228	Cga/Tga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0049194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	10	180	1	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0049194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	68	591	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	24	634	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
CDH1	999	MSKCC	GRCh37	16	68842471	68842471	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	72	628	0	ENST00000261769.5:c.531+1G>A		p.X177_splice	ENST00000261769	NM_004360.3	177																																																																															
CDH1	999	MSKCC	GRCh37	16	68857382	68857382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	102	617	0	ENST00000261769.5:c.2017C>T	p.Gln673Ter	p.Q673*	ENST00000261769	NM_004360.3	673	Cag/Tag																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511206	148511206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	130	539	0	ENST00000320356.2:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000320356	NM_004456.4	566	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822706	72822706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	110	854	0	ENST00000268489.5:c.9469A>G	p.Thr3157Ala	p.T3157A	ENST00000268489	NM_006885.3	3157	Aca/Gca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249513	153249513	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	93	578	0	ENST00000281708.4:c.1265del	p.Gly422ValfsTer8	p.G422Vfs*8	ENST00000281708	NM_033632.3	422	gGt/gt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	71	629	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577490	7577503	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTCCTGACCTGGA	GCTCCTGACCTGGA	-			P-0049195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	24	541	0	ENST00000269305.4:c.778_782+9del		p.X260_splice	ENST00000269305	NM_001126112.2	260																																																																															
CASP8	841	MSKCC	GRCh37	2	202122974	202122974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	22	407	0	ENST00000358485.4:c.20C>T	p.Ala7Val	p.A7V	ENST00000358485	NM_001080125.1	7	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	182	592	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441974	6441974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	275	424	0	ENST00000356142.4:c.533C>T	p.Ala178Val	p.A178V	ENST00000356142	NM_018890.3	178	gCg/gTg																																																																														
FH	2271	MSKCC	GRCh37	1	241671937	241671937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	50	480	0	ENST00000366560.3:c.704A>G	p.His235Arg	p.H235R	ENST00000366560	NM_000143.3	235	cAt/cGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	360	479	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
NUF2	83540	MSKCC	GRCh37	1	163318823	163318823	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	118	332	0	ENST00000271452.3:c.1213A>T	p.Ile405Phe	p.I405F	ENST00000271452	NM_145697.2	405	Att/Ttt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061866	38061874	+	inframe_deletion	In_Frame_Del	DEL	CATGGAGCC	CATGGAGCC	-			P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	215	659	1	ENST00000250448.2:c.115_123del	p.Gly39_Met41del	p.G39_M41del	ENST00000250448	NM_004496.3	39	GGCTCCATG/-																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031834	10031834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	222	548	1	ENST00000330684.3:c.989C>T	p.Pro330Leu	p.P330L	ENST00000330684	NM_001134407.1	330	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579428	7579429	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	398	714	0	ENST00000269305.4:c.258_259del	p.Pro87SerfsTer61	p.P87Sfs*61	ENST00000269305	NM_001126112.2	86	gcACca/gcca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790153	40790153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	124	585	1	ENST00000373198.4:c.2578C>T	p.Pro860Ser	p.P860S	ENST00000373198	NM_133170.3	860	Ccc/Tcc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041725	47041725	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0049197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	137	208	0	ENST00000329236.7:c.1716G>C	p.Gln572His	p.Q572H	ENST00000329236	NM_001204466.1	572	caG/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	2184	423	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ATM	472	MSKCC	GRCh37	11	108235931	108235931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	266	348	0	ENST00000278616.4:c.8973C>A	p.Cys2991Ter	p.C2991*	ENST00000278616	NM_000051.3	2991	tgC/tgA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828160	3828165	+	inframe_deletion	In_Frame_Del	DEL	TGCTAA	TGCTAA	-			P-0049200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	94	329	0	ENST00000262367.5:c.1960_1965del	p.Leu654_Ala655del	p.L654_A655del	ENST00000262367	NM_004380.2	654	TTAGCA/-																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660513	67660585	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTGATGCTGTGTTTCATGAGCGCTATGCCCTCATCCAGCATCAGAAGTCACACAAGAATGAGAAGCGCTTT	CTGTGATGCTGTGTTTCATGAGCGCTATGCCCTCATCCAGCATCAGAAGTCACACAAGAATGAGAAGCGCTTT	-			P-0049200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	134	457	0	ENST00000264010.4:c.1413_1485del	p.Tyr471Ter	p.Y471*	ENST00000264010	NM_006565.3	471	taCTGTGATGCTGTGTTTCATGAGCGCTATGCCCTCATCCAGCATCAGAAGTCACACAAGAATGAGAAGCGCTTT/ta																																																																														
STK11	6794	MSKCC	GRCh37	19	1219367	1219367	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	900	732	0	ENST00000326873.7:c.419T>G	p.Leu140Arg	p.L140R	ENST00000326873	NM_000455.4	140	cTg/cGg																																																																														
ATR	545	MSKCC	GRCh37	3	142232414	142232414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	288	460	0	ENST00000350721.4:c.4570G>T	p.Val1524Leu	p.V1524L	ENST00000350721	NM_001184.3	1524	Gtg/Ttg																																																																														
KDR	3791	MSKCC	GRCh37	4	55964865	55964865	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0049200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	245	270	0	ENST00000263923.4:c.2372G>T	p.Arg791Leu	p.R791L	ENST00000263923	NM_002253.2	791	cGg/cTg																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64289237	64289961	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTAAGTAATGGATTCTCTTTTCATTTGTACTCTCTTTCATTTCCTTGTTGAGTGTCAGTGAGTTTAATAGTCTAATAGCCCATTTAATCATTATGATTATTTTTTGAGATAGTATTAAAACCAGGAAATCAAGATCTTACATTCTTTTTTGCATTTCATGCAGTTGCTCATATTACTAAGATTCTAATCCAACAAGAGTTTTTGAATTATTGTTTTGCTTTAAATACTTGATTGAATATGTTGGTTATTTTGTATTTTTATTGAGGTATAATTAAGATACATTTAAAGATACAATAAAATGCACAGGTCTCCAAAGGAGACCAGTTGACAATAACAGCCAAATTAACCATCCAATACAACACATAGAATATTTTGAGTGCTGTAGAACATGCCTTTGTGGCTTTTGTAGTCATCTTCCCTGCTACCAGAGGCAACTTCTGACTTCACTATAAATTAGTTTTGTCTTTTCGTGGACTTACGTGTAAATGGATTTGTGAGTCGACTGTTGTAACCAATACTCAAACGAAGATATAAAGAAAATTAACTTTTTATGATTTTTTCCATTTACACTGATGTGCCTGTTCATATTCCTTTCTGCATCAGGTCACAGCCTAATTAATCAAAAGATAAATTGCCACAAGAGAGGTGATGGTTGTCTATAAGACACTAAATATTACTGTAGGGGGCTTTTGCCTTGTTTCATTTTTTTTTTTTTTTCCTCCCAG	GTAAGTAATGGATTCTCTTTTCATTTGTACTCTCTTTCATTTCCTTGTTGAGTGTCAGTGAGTTTAATAGTCTAATAGCCCATTTAATCATTATGATTATTTTTTGAGATAGTATTAAAACCAGGAAATCAAGATCTTACATTCTTTTTTGCATTTCATGCAGTTGCTCATATTACTAAGATTCTAATCCAACAAGAGTTTTTGAATTATTGTTTTGCTTTAAATACTTGATTGAATATGTTGGTTATTTTGTATTTTTATTGAGGTATAATTAAGATACATTTAAAGATACAATAAAATGCACAGGTCTCCAAAGGAGACCAGTTGACAATAACAGCCAAATTAACCATCCAATACAACACATAGAATATTTTGAGTGCTGTAGAACATGCCTTTGTGGCTTTTGTAGTCATCTTCCCTGCTACCAGAGGCAACTTCTGACTTCACTATAAATTAGTTTTGTCTTTTCGTGGACTTACGTGTAAATGGATTTGTGAGTCGACTGTTGTAACCAATACTCAAACGAAGATATAAAGAAAATTAACTTTTTATGATTTTTTCCATTTACACTGATGTGCCTGTTCATATTCCTTTCTGCATCAGGTCACAGCCTAATTAATCAAAAGATAAATTGCCACAAGAGAGGTGATGGTTGTCTATAAGACACTAAATATTACTGTAGGGGGCTTTTGCCTTGTTTCATTTTTTTTTTTTTTTCCTCCCAG	-			P-0049200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	39	316	0	ENST00000370651.3:c.404+1_405-1del		p.X135_splice	ENST00000370651	NM_003463.4	135																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106545662	106545662	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	312	498	0	ENST00000359195.3:c.3139G>C	p.Asp1047His	p.D1047H	ENST00000359195	NM_002649.2	1047	Gac/Cac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	214	381	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260234	16260235	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGG			P-0049204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	175	423	0	ENST00000375759.3:c.7500_7503dup	p.Ile2502ValfsTer26	p.I2502Vfs*26	ENST00000375759	NM_015001.2	2500	gag/gaGTGGg																																																																														
MGA	23269	MSKCC	GRCh37	15	42041432	42041432	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	283	400	1	ENST00000219905.7:c.5627del	p.Ala1876GlufsTer2	p.A1876Efs*2	ENST00000219905	NM_001164273.1	1876	gCa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	93	487	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78432437	78432437	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	36	340	0	ENST00000370768.2:c.416-2A>G		p.X139_splice	ENST00000370768	NM_003902.3	139																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864364	57864364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	79	733	0	ENST00000228682.2:c.1841G>T	p.Gly614Val	p.G614V	ENST00000228682	NM_005269.2	614	gGt/gTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220442	1220442	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	120	681	0	ENST00000326873.7:c.536del	p.Pro179ArgfsTer108	p.P179Rfs*108	ENST00000326873	NM_000455.4	179	Ccg/cg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599867	10599868	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	113	515	1	ENST00000171111.5:c.1708_1708+1delinsTT		p.X570_splice	ENST00000171111	NM_203500.1	570																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45873447	45873447	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	226	583	0	ENST00000391945.4:c.49A>T	p.Ile17Phe	p.I17F	ENST00000391945	NM_000400.3	17	Atc/Ttc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610705	52610706	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	30	324	0	ENST00000394830.3:c.3467_3468del	p.Lys1156SerfsTer24	p.K1156Sfs*24	ENST00000394830	NM_018313.4	1156	aAA/a																																																																														
KIT	3815	MSKCC	GRCh37	4	55594027	55594027	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	46	319	0	ENST00000288135.5:c.1813G>C	p.Glu605Gln	p.E605Q	ENST00000288135	NM_000222.2	605	Gag/Cag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66218809	66218809	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	21	242	0	ENST00000273854.3:c.2249T>A	p.Met750Lys	p.M750K	ENST00000273854	NM_004439.5	750	aTg/aAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535287	66535287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	70	521	0	ENST00000273854.3:c.174C>A	p.Ser58Arg	p.S58R	ENST00000273854	NM_004439.5	58	agC/agA																																																																														
MSH3	4437	MSKCC	GRCh37	5	80071512	80071512	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	30	241	0	ENST00000265081.6:c.2254-1G>A		p.X752_splice	ENST00000265081	NM_002439.4	752																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041675	47041675	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	25	251	0	ENST00000329236.7:c.1666A>C	p.Lys556Gln	p.K556Q	ENST00000329236	NM_001204466.1	556	Aag/Cag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627318	86627318	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0049226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	53	306	0	ENST00000274376.6:c.692+1G>T		p.X231_splice	ENST00000274376	NM_002890.2	231																																																																															
APC	324	MSKCC	GRCh37	5	112175876	112175876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	76	205	0	ENST00000257430.4:c.4585C>T	p.Gln1529Ter	p.Q1529*	ENST00000257430	NM_000038.5	1529	Cag/Tag																																																																														
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	112	579	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032138	26032138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	75	513	0	ENST00000244661.2:c.151G>A	p.Glu51Lys	p.E51K	ENST00000244661	NM_003537.3	51	Gag/Aag																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	321	682	1	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627327	37627327	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	74	482	0	ENST00000447079.4:c.1242G>C	p.Lys414Asn	p.K414N	ENST00000447079	NM_015083.1	414	aaG/aaC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	92	248	1				ENST00000310581	NM_198253.2																																																																																
TET1	80312	MSKCC	GRCh37	10	70446372	70446372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	42	448	0	ENST00000373644.4:c.5312G>A	p.Arg1771Lys	p.R1771K	ENST00000373644	NM_030625.2	1771	aGg/aAg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371653	55371653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	269	628	0	ENST00000297316.4:c.343C>T	p.Arg115Trp	p.R115W	ENST00000297316	NM_022454.3	115	Cgg/Tgg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141557641	141557641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	98	774	2	ENST00000220592.5:c.1674G>T	p.Gln558His	p.Q558H	ENST00000220592	NM_012154.3	558	caG/caT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348830	118348830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	101	280	0	ENST00000534358.1:c.3483C>G	p.Cys1161Trp	p.C1161W	ENST00000534358	NM_005933.3	1161	tgC/tgG																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061430	38061431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	152	489	0	ENST00000250448.2:c.558dup	p.Pro187AlafsTer40	p.P187Afs*40	ENST00000250448	NM_004496.3	186	-/G																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108211	8108211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	92	568	0	ENST00000585124.1:c.1013C>T	p.Ser338Phe	p.S338F	ENST00000585124	NM_004217.3	338	tCt/tTt																																																																														
RARA	5914	MSKCC	GRCh37	17	38508593	38508593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	77	530	1	ENST00000254066.5:c.641C>T	p.Ser214Leu	p.S214L	ENST00000254066	NM_000964.3	214	tCa/tTa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661627	227661627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	211	680	0	ENST00000305123.5:c.1828G>A	p.Asp610Asn	p.D610N	ENST00000305123	NM_005544.2	610	Gat/Aat																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032267	26032267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	102	323	0	ENST00000244661.2:c.22G>T	p.Ala8Ser	p.A8S	ENST00000244661	NM_003537.3	8	Gct/Tct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151900133	151900134	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	189	273	0	ENST00000262189.6:c.3977dup	p.Leu1326PhefsTer7	p.L1326Ffs*7	ENST00000262189	NM_170606.2	1326	tta/ttTa																																																																														
RFWD2	0	MSKCC	GRCh37	1	176145075	176145075	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	144	332	0	ENST00000367669.3:c.536A>G	p.Asn179Ser	p.N179S	ENST00000367669	NM_022457.5	179	aAt/aGt																																																																														
POLE	5426	MSKCC	GRCh37	12	133220538	133220538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	165	470	0	ENST00000320574.5:c.4175A>G	p.Asn1392Ser	p.N1392S	ENST00000320574	NM_006231.2	1392	aAc/aGc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59886010	59886010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	182	514	0	ENST00000259008.2:c.736A>G	p.Ile246Val	p.I246V	ENST00000259008	NM_032043.2	246	Ata/Gta																																																																														
TOP1	7150	MSKCC	GRCh37	20	39746876	39746877	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	92	201	0	ENST00000361337.2:c.1892dup	p.Asn631LysfsTer11	p.N631Kfs*11	ENST00000361337	NM_003286.2	630	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	68	513	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054911	176054911	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0049247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	17	294	0	ENST00000367669.3:c.1141+1G>T		p.X381_splice	ENST00000367669	NM_022457.5	381																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632609	3632609	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201214017		P-0049247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	34	648	0	ENST00000294008.3:c.5239G>A	p.Val1747Met	p.V1747M	ENST00000294008	NM_032444.2	1747	Gtg/Atg																																																																														
CD79B	974	MSKCC	GRCh37	17	62007706	62007706	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	22	420	0	ENST00000392795.3:c.161T>A	p.Ile54Lys	p.I54K	ENST00000392795	NM_001039933.1	54	aTa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	109	341	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627631	37627631	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0049248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	134	529	0	ENST00000447079.4:c.1546A>T	p.Lys516Ter	p.K516*	ENST00000447079	NM_015083.1	516	Aag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657630	37657630	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0049248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	139	402	0	ENST00000447079.4:c.2547C>G	p.Tyr849Ter	p.Y849*	ENST00000447079	NM_015083.1	849	taC/taG																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59886096	59886096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	185	375	0	ENST00000259008.2:c.650G>A	p.Cys217Tyr	p.C217Y	ENST00000259008	NM_032043.2	217	tGc/tAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0049249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	49	346	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146592	185146592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	52	408	0	ENST00000265026.3:c.223G>A	p.Asp75Asn	p.D75N	ENST00000265026	NM_004721.4	75	Gat/Aat																																																																														
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	121	572	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602746	10602746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	161	617	1	ENST00000171111.5:c.832C>T	p.Pro278Ser	p.P278S	ENST00000171111	NM_203500.1	278	Ccg/Tcg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348059	89348059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	111	739	2	ENST00000301030.4:c.4891C>T	p.Arg1631Trp	p.R1631W	ENST00000301030	NM_001256183.1	1631	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431421	49431421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	93	499	0	ENST00000301067.7:c.9718C>G	p.Leu3240Val	p.L3240V	ENST00000301067	NM_003482.3	3240	Ctg/Gtg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73350141	73350141	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	32	330	0	ENST00000377767.4:c.744A>T	p.Gln248His	p.Q248H	ENST00000377767	NM_014953.3	248	caA/caT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250861	10250861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	105	594	0	ENST00000340748.4:c.3619C>A	p.Arg1207Ser	p.R1207S	ENST00000340748		1207	Cgc/Agc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215332	123215332	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0049249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	37	405	0	ENST00000218089.9:c.2879del	p.Gly960AspfsTer5	p.G960Dfs*5	ENST00000218089	NM_001042749.1	960	Gga/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	84	616	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
AXL	558	MSKCC	GRCh37	19	41765523	41765523	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199709000		P-0049252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	82	681	0	ENST00000301178.4:c.2399G>A	p.Arg800Gln	p.R800Q	ENST00000301178	NM_021913.4	800	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	58	188	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295271	1295271	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0049252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	49	269	0				ENST00000310581	NM_198253.2																																																																																
PREX2	80243	MSKCC	GRCh37	8	69032483	69032483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	101	477	0	ENST00000288368.4:c.3557A>G	p.Asp1186Gly	p.D1186G	ENST00000288368	NM_024870.2	1186	gAc/gGc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806092	1806092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	38	659	2	ENST00000260795.2:c.1111A>T	p.Ser371Cys	p.S371C	ENST00000260795		371	Agt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0049257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	30	240	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0049257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	12	157	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108188098	108188098	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0049257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	31	200	0	ENST00000278616.4:c.6199-2A>T		p.X2067_splice	ENST00000278616	NM_000051.3	2067																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11106991	11106991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	21	565	0	ENST00000344626.4:c.1696G>A	p.Glu566Lys	p.E566K	ENST00000344626	NM_003072.3	566	Gag/Aag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71102870	71102870	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	30	319	0	ENST00000318789.4:c.337C>T	p.Gln113Ter	p.Q113*	ENST00000318789	NM_032682.5	113	Cag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021837	69021837	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	23	381	0	ENST00000288368.4:c.3125T>C	p.Met1042Thr	p.M1042T	ENST00000288368	NM_024870.2	1042	aTg/aCg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44936019	44936020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0049257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	49	410	0	ENST00000377967.4:c.2782_2783dup	p.Pro929ThrfsTer9	p.P929Tfs*9	ENST00000377967	NM_021140.2	927	cca/ccATa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123181347	123181347	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	10	177	0	ENST00000218089.9:c.811del	p.Arg271GlyfsTer11	p.R271Gfs*11	ENST00000218089	NM_001042749.1	271	Cgg/gg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	97	149	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0049259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	937	402	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652097	36652098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	297	661	0	ENST00000244741.5:c.222dup	p.Lys75GlnfsTer14	p.K75Qfs*14	ENST00000244741	NM_000389.4	73	-/C																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0049259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	82	157	0	ENST00000318789.4:c.1531-1G>C		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																															
FAT1	2195	MSKCC	GRCh37	4	187542407	187542407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	94	343	0	ENST00000441802.2:c.5333C>T	p.Ala1778Val	p.A1778V	ENST00000441802	NM_005245.3	1778	gCc/gTc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984337	201984338	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	TAC			P-0049259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	432	444	0	ENST00000359651.3:c.1009_1011dup	p.Tyr337dup	p.Y337dup	ENST00000359651		337	-/TAC																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797223	135797223	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	101	161	0	ENST00000298552.3:c.646T>A	p.Phe216Ile	p.F216I	ENST00000298552	NM_001162426.1	216	Ttt/Att																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922962	44922963	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	223	232	0	ENST00000377967.4:c.1825dup	p.Tyr609LeufsTer12	p.Y609Lfs*12	ENST00000377967	NM_021140.2	608	cct/ccTt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651929	36651933	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCC	CTGCC	T			P-0049259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	234	516	0	ENST00000244741.5:c.51_55delinsT	p.Cys18AlafsTer12	p.C18Afs*12	ENST00000244741	NM_000389.4	17	gcCTGCCgc/gcTgc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	9	465	0	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	15	354	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	61	513	1	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17384762	17384762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	51	586	2	ENST00000359435.4:c.394G>A	p.Val132Met	p.V132M	ENST00000359435	NM_001033549.1	132	Gtg/Atg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37006472	37006472	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	17	238	0	ENST00000358127.4:c.473T>C	p.Ile158Thr	p.I158T	ENST00000358127	NM_001280556.1	158	aTa/aCa																																																																														
PAK7	0	MSKCC	GRCh37	20	9520158	9520158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	37	379	0	ENST00000353224.5:c.2111G>T	p.Gly704Val	p.G704V	ENST00000353224	NM_177990.2	704	gGt/gTt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844801	156844801	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	70	516	0	ENST00000524377.1:c.1354+1G>A		p.X452_splice	ENST00000524377	NM_002529.3	452																																																																															
IRS2	8660	MSKCC	GRCh37	13	110438174	110438174	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	25	126	0	ENST00000375856.3:c.227A>C	p.Tyr76Ser	p.Y76S	ENST00000375856	NM_003749.2	76	tAc/tCc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30105623	30105623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	24	534	2	ENST00000331968.5:c.1063G>T	p.Gly355Trp	p.G355W	ENST00000331968	NM_002742.2	355	Ggg/Tgg																																																																														
MGA	23269	MSKCC	GRCh37	15	42042316	42042350	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGAAAGATGGAGAAAACATCTGAAGGGCCCCTT	AGGGAAAGATGGAGAAAACATCTGAAGGGCCCCTT	-			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	10	431	0	ENST00000219905.7:c.6512_6546del	p.Arg2171AsnfsTer12	p.R2171Nfs*12	ENST00000219905	NM_001164273.1	2171	AGGGAAAGATGGAGAAAACATCTGAAGGGCCCCTTa/a																																																																														
CDH1	999	MSKCC	GRCh37	16	68849659	68849659	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	18	419	0	ENST00000261769.5:c.1562T>C	p.Ile521Thr	p.I521T	ENST00000261769	NM_004360.3	521	aTa/aCa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56348482	56348482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	14	300	0	ENST00000348428.3:c.290G>T	p.Gly97Val	p.G97V	ENST00000348428	NM_006785.3	97	gGt/gTt																																																																														
BBC3	27113	MSKCC	GRCh37	19	47729983	47729983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	32	276	0	ENST00000449228.1:c.406G>A	p.Ala136Thr	p.A136T	ENST00000449228	NM_001127240.2	136	Gca/Aca																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281805	46281805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	43	470	1	ENST00000371998.3:c.4252G>T	p.Gly1418Cys	p.G1418C	ENST00000371998		1418	Ggt/Tgt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750450	57750450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	23	445	1	ENST00000274289.3:c.2018T>C	p.Met673Thr	p.M673T	ENST00000274289	NM_006622.3	673	aTg/aCg																																																																														
BRAF	673	MSKCC	GRCh37	7	140501336	140501336	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	30	241	0	ENST00000288602.6:c.736G>C	p.Ala246Pro	p.A246P	ENST00000288602	NM_004333.4	246	Gca/Cca																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911374	39911374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	17	426	0	ENST00000378444.4:c.5256C>A	p.Asp1752Glu	p.D1752E	ENST00000378444	NM_001123385.1	1752	gaC/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	112	325	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	187	488	0	ENST00000269305.4:c.700T>A	p.Tyr234Asn	p.Y234N	ENST00000269305	NM_001126112.2	234	Tac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106155	27106257	+	frameshift_variant	Frame_Shift_Del	DEL	GACCGAGGATGGAGCTAAGAGTTCAGAGGCCATCAAGGAGAGCAGCAAGTTTCCATTTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAG	GACCGAGGATGGAGCTAAGAGTTCAGAGGCCATCAAGGAGAGCAGCAAGTTTCCATTTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAG	-			P-0049262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	143	381	0	ENST00000324856.7:c.5769_5871del	p.Glu1924AsnfsTer57	p.E1924Nfs*57	ENST00000324856	NM_006015.4	1922	ttGACCGAGGATGGAGCTAAGAGTTCAGAGGCCATCAAGGAGAGCAGCAAGTTTCCATTTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAG/tt																																																																														
SRC	6714	MSKCC	GRCh37	20	36031742	36031742	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	201	525	0	ENST00000358208.4:c.1571C>G	p.Thr524Arg	p.T524R	ENST00000358208		524	aCg/aGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	90	148	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0049263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	343	442	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																														
HRAS	3265	MSKCC	GRCh37	11	533854	533854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	68	547	1	ENST00000311189.7:c.202C>T	p.Arg68Trp	p.R68W	ENST00000311189		68	Cgg/Tgg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968298	18968298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	191	590	0	ENST00000262803.5:c.2138C>T	p.Ser713Phe	p.S713F	ENST00000262803	NM_002911.3	713	tCc/tTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467437	66467437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	76	303	0	ENST00000273854.3:c.832G>A	p.Ala278Thr	p.A278T	ENST00000273854	NM_004439.5	278	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	105	437	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120236	70120239	+	frameshift_variant	Frame_Shift_Del	DEL	ACTC	ACTC	TGA			P-0049268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	221	577	1	ENST00000245479.2:c.1238_1241delinsTGA	p.His413LeufsTer57	p.H413Lfs*57	ENST00000245479	NM_000346.3	413	cACTCg/cTGAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	233	576	0	ENST00000269305.4:c.527del	p.Cys176SerfsTer71	p.C176Sfs*71	ENST00000269305	NM_001126112.2	176	tGc/tc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151848602	151848602	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	120	336	0	ENST00000262189.6:c.12591G>A	p.Trp4197Ter	p.W4197*	ENST00000262189	NM_170606.2	4197	tgG/tgA																																																																														
EP300	2033	MSKCC	GRCh37	22	41572924	41572924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	84	622	0	ENST00000263253.7:c.5209C>T	p.Arg1737Cys	p.R1737C	ENST00000263253	NM_001429.3	1737	Cgc/Tgc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18747445	18747446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	34	318	0	ENST00000266497.5:c.3911dup	p.Leu1305ProfsTer3	p.L1305Pfs*3	ENST00000266497		1302	-/T																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607460	46607460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	176	736	2	ENST00000263734.3:c.1649G>A	p.Arg550Gln	p.R550Q	ENST00000263734	NM_001430.4	550	cGg/cAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733266	40733266	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	79	563	0	ENST00000373198.4:c.3540C>A	p.Tyr1180Ter	p.Y1180*	ENST00000373198	NM_133170.3	1180	taC/taA																																																																														
REL	5966	MSKCC	GRCh37	2	61149429	61149429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	42	419	0	ENST00000295025.8:c.1619C>T	p.Ser540Phe	p.S540F	ENST00000295025	NM_002908.2	540	tCc/tTc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049271-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	240	587	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0049271-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	455	508	0	ENST00000275493.2:c.2314_2319dupCCCCAC	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049271-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			877	63	581	0	ENST00000324856.7:c.1650dupC	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0049271-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	105	321	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
PGR	5241	MSKCC	GRCh37	11	100998223	100998223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049271-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	79	295	0	ENST00000325455.5:c.1579G>T	p.Ala527Ser	p.A527S	ENST00000325455	NM_001202474.3	527	Gcc/Tcc																																																																														
ATM	472	MSKCC	GRCh37	11	108218015	108218015	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049271-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	33	318	0	ENST00000278616.4:c.8594T>A	p.Ile2865Lys	p.I2865K	ENST00000278616	NM_000051.3	2865	aTa/aAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799372	88799372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049271-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	219	333	0	ENST00000360948.2:c.13C>G	p.Leu5Val	p.L5V	ENST00000360948	NM_001012338.2	5	Ctt/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578257	7578258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0049271-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	424	637	0	ENST00000269305.4:c.590_591dup	p.Glu198TrpfsTer50	p.E198Wfs*50	ENST00000269305	NM_001126112.2	197	-/TG																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118405	17118405	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0049271-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	435	641	0	ENST00000285071.4:c.1433-1G>C		p.X478_splice	ENST00000285071	NM_144997.5	478																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553142	106553142	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049271-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	114	475	0	ENST00000369096.4:c.1107G>T	p.Glu369Asp	p.E369D	ENST00000369096	NM_001198.3	369	gaG/gaT																																																																														
PARK2	0	MSKCC	GRCh37	6	161990408	161990408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049271-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	69	402	0	ENST00000366898.1:c.912C>A	p.Phe304Leu	p.F304L	ENST00000366898	NM_004562.2	304	ttC/ttA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	320	485	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	245	417	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100830	27100830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	113	443	0	ENST00000324856.7:c.4112G>A	p.Arg1371Gln	p.R1371Q	ENST00000324856	NM_006015.4	1371	cGg/cAg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114901008	114901008	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	258	503	0	ENST00000543371.1:c.618del	p.Tyr206Ter	p.Y206*	ENST00000543371	NM_001198531.1	206	taC/ta																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456300	99456300	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	151	313	0	ENST00000268035.6:c.1617T>A	p.Asp539Glu	p.D539E	ENST00000268035	NM_000875.3	539	gaT/gaA																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128016893	128016893	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	112	459	0	ENST00000285398.2:c.2196A>T	p.Glu732Asp	p.E732D	ENST00000285398	NM_000122.1	732	gaA/gaT																																																																														
APC	324	MSKCC	GRCh37	5	112175438	112175439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	130	268	0	ENST00000257430.4:c.4148dup	p.Met1383IlefsTer3	p.M1383Ifs*3	ENST00000257430	NM_000038.5	1383	atg/aTtg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287206	33287206	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	184	512	0	ENST00000374542.5:c.1891A>C	p.Lys631Gln	p.K631Q	ENST00000374542	NM_001141970.1	631	Aaa/Caa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922202	39922202	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0049272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	186	483	0	ENST00000378444.4:c.3970del	p.Ile1324LeufsTer45	p.I1324Lfs*45	ENST00000378444	NM_001123385.1	1324	Att/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	225	583	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	250	849	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536295	106536295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	137	423	0	ENST00000369096.4:c.262C>T	p.Leu88Phe	p.L88F	ENST00000369096	NM_001198.3	88	Ctt/Ttt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89883020	89883020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	43	177	0	ENST00000389301.3:c.4T>C	p.Ser2Pro	p.S2P	ENST00000389301	NM_000135.2	2	Tcc/Ccc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	51	628	2	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	48	431	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109873	115109873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	30	568	0	ENST00000257566.3:c.2005C>A	p.Pro669Thr	p.P669T	ENST00000257566	NM_016569.3	669	Ccc/Acc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117745	115117745	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	28	325	0	ENST00000257566.3:c.690G>C	p.Trp230Cys	p.W230C	ENST00000257566	NM_016569.3	230	tgG/tgC																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602835	10602835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	81	791	0	ENST00000171111.5:c.743C>T	p.Ala248Val	p.A248V	ENST00000171111	NM_203500.1	248	gCc/gTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267498	198267498	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	30	381	0	ENST00000335508.6:c.1859T>C	p.Met620Thr	p.M620T	ENST00000335508	NM_012433.2	620	aTg/aCg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039405	47039405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	57	628	0	ENST00000329236.7:c.797G>C	p.Arg266Pro	p.R266P	ENST00000329236	NM_001204466.1	266	cGc/cCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0049286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	154	535	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0049286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	113	342	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0049286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	106	394	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	126	430	0	ENST00000263967.3:c.112C>A	p.Arg38Ser	p.R38S	ENST00000263967	NM_006218.2	38	Cgt/Agt																																																																														
REL	5966	MSKCC	GRCh37	2	61148906	61148924	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTTTTCTCATGATGCAG	TTGTTTTCTCATGATGCAG	-			P-0049286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	78	261	0	ENST00000295025.8:c.1100_1118del	p.Phe367Ter	p.F367*	ENST00000295025	NM_002908.2	366	TTGTTTTCTCATGATGCAGtt/tt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	44	277	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625386	69625386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	43	675	1	ENST00000334134.2:c.407C>T	p.Thr136Met	p.T136M	ENST00000334134	NM_005247.2	136	aCg/aTg																																																																														
NF2	4771	MSKCC	GRCh37	22	30032833	30032833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	56	359	0	ENST00000338641.4:c.208G>A	p.Asp70Asn	p.D70N	ENST00000338641	NM_000268.3	70	Gac/Aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140507833	140507833	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	41	485	0	ENST00000288602.6:c.638A>C	p.Asp213Ala	p.D213A	ENST00000288602	NM_004333.4	213	gAt/gCt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270487	98270487	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	63	479	0	ENST00000331920.6:c.157C>G	p.Pro53Ala	p.P53A	ENST00000331920	NM_000264.3	53	Ccc/Gcc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039391	47039399	+	inframe_deletion	In_Frame_Del	DEL	GACCCAACT	GACCCAACT	-			P-0049287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	85	350	0	ENST00000329236.7:c.785_793del	p.Thr262_Leu264del	p.T262_L264del	ENST00000329236	NM_001204466.1	261	caGACCCAACTg/cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	173	356	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	99	586	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44937709	44937709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	81	256	1	ENST00000377967.4:c.2897C>T	p.Pro966Leu	p.P966L	ENST00000377967	NM_021140.2	966	cCt/cTt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056314	26056314	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	77	426	0	ENST00000343677.2:c.343G>T	p.Glu115Ter	p.E115*	ENST00000343677	NM_005319.3	115	Gaa/Taa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805921	32805921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	91	753	0	ENST00000374899.4:c.90G>C	p.Leu30Phe	p.L30F	ENST00000374899	NM_018833.2	30	ttG/ttC																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139440198	139440198	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	18	131	0	ENST00000277541.6:c.41T>A	p.Leu14Gln	p.L14Q	ENST00000277541	NM_017617.3	14	cTg/cAg																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	114	799	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	465	933	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0049290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	286	565	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295274	1295274	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0049290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	255	698	0				ENST00000310581	NM_198253.2																																																																																
PBRM1	55193	MSKCC	GRCh37	3	52623229	52623229	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0049290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	224	458	0	ENST00000394830.3:c.2822C>G	p.Ser941Ter	p.S941*	ENST00000394830	NM_018313.4	941	tCa/tGa																																																																														
ETV6	2120	MSKCC	GRCh37	12	12038872	12038872	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	205	428	0	ENST00000396373.4:c.1165A>C	p.Met389Leu	p.M389L	ENST00000396373	NM_001987.4	389	Atg/Ctg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440118	49440118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	428	879	0	ENST00000301067.7:c.4508G>A	p.Ser1503Asn	p.S1503N	ENST00000301067	NM_003482.3	1503	aGc/aAc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14026025	14026025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	180	342	0	ENST00000311895.7:c.985C>G	p.Leu329Val	p.L329V	ENST00000311895	NM_005236.2	329	Ctt/Gtt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671459	30671459	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	439	939	0	ENST00000376406.3:c.5501A>C	p.Gln1834Pro	p.Q1834P	ENST00000376406	NM_014641.2	1834	cAg/cCg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981687	70981687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	515	1155	3	ENST00000276594.2:c.409G>A	p.Asp137Asn	p.D137N	ENST00000276594	NM_024504.3	137	Gac/Aac																																																																														
MED12	9968	MSKCC	GRCh37	X	70344614	70344614	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	308	745	0	ENST00000374080.3:c.1975G>A	p.Asp659Asn	p.D659N	ENST00000374080		659	Gat/Aat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	14	449	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0049327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	67	760	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	18	334	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624305	89624305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0049327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	64	528	0	ENST00000371953.3:c.79T>A	p.Tyr27Asn	p.Y27N	ENST00000371953	NM_000314.4	27	Tat/Aat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409892	63409892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	35	680	1	ENST00000330258.3:c.3275C>T	p.Pro1092Leu	p.P1092L	ENST00000330258	NM_152424.3	1092	cCt/cTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76889148	76889148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	20	434	0	ENST00000373344.5:c.4862C>T	p.Thr1621Met	p.T1621M	ENST00000373344	NM_000489.3	1621	aCg/aTg																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480601	123480601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	39	730	0	ENST00000371139.4:c.109G>A	p.Val37Met	p.V37M	ENST00000371139	NM_001114937.2	37	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	230	380	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	132	263	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	169	543	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	49	233	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	149	514	1	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																																																														
JUN	3725	MSKCC	GRCh37	1	59248240	59248240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	40	91	0	ENST00000371222.2:c.503C>G	p.Pro168Arg	p.P168R	ENST00000371222	NM_002228.3	168	cCg/cGg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120478123	120478123	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	115	515	0	ENST00000256646.2:c.3627C>G	p.Phe1209Leu	p.F1209L	ENST00000256646	NM_024408.3	1209	ttC/ttG																																																																														
PALB2	79728	MSKCC	GRCh37	16	23614820	23614820	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	116	448	0	ENST00000261584.4:c.3521G>C	p.Gly1174Ala	p.G1174A	ENST00000261584	NM_024675.3	1174	gGa/gCa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	202	737	0	ENST00000269571.5:c.829G>A	p.Asp277Asn	p.D277N	ENST00000269571		277	Gac/Aac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866671	37866671	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	222	752	0	ENST00000269571.5:c.838G>C	p.Glu280Gln	p.E280Q	ENST00000269571		280	Gag/Cag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866719	37866719	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	222	705	0	ENST00000269571.5:c.886G>C	p.Val296Leu	p.V296L	ENST00000269571		296	Gtg/Ctg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	285	399	0	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29083957	29083957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	20	145	1	ENST00000328354.6:c.1560G>T	p.Lys520Asn	p.K520N	ENST00000328354	NM_007194.3	520	aaG/aaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	47	348	0				ENST00000310581	NM_198253.2																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44918582	44918582	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	325	253	0	ENST00000377967.4:c.1065G>A	p.Trp355Ter	p.W355*	ENST00000377967	NM_021140.2	355	tgG/tgA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0049332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	54	412	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	46	319	1	ENST00000274335.5:c.1718T>C	p.Leu573Pro	p.L573P	ENST00000274335		573	cTg/cCg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900329	101900329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	24	364	0	ENST00000374994.4:c.763C>T	p.Arg255Cys	p.R255C	ENST00000374994	NM_004612.2	255	Cgt/Tgt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259397	11259397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	83	694	0	ENST00000361445.4:c.4171C>G	p.Arg1391Gly	p.R1391G	ENST00000361445	NM_004958.3	1391	Cga/Gga																																																																														
REL	5966	MSKCC	GRCh37	2	61147184	61147184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	75	392	0	ENST00000295025.8:c.862G>A	p.Gly288Ser	p.G288S	ENST00000295025	NM_002908.2	288	Ggc/Agc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964100	28964100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	85	492	0	ENST00000282397.4:c.1802A>G	p.His601Arg	p.H601R	ENST00000282397	NM_002019.4	601	cAc/cGc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590756	95590756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	56	355	1	ENST00000343455.3:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000343455	NM_177438.2	385	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023972	27023979	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCCAT	GCGCCCAT	-			P-0049332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	51	188	0	ENST00000324856.7:c.1079_1086del	p.Ala360GlufsTer37	p.A360Efs*37	ENST00000324856	NM_006015.4	360	GCGCCCATg/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106951	27107003	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAAGGGCAGTATCGGCAACCTCCTGGGCTTCCTAGAGGACAGCCTTGCCGC	CAGAAGGGCAGTATCGGCAACCTCCTGGGCTTCCTAGAGGACAGCCTTGCCGC	-			P-0049332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	172	626	0	ENST00000324856.7:c.6564_6616del	p.Gln2188HisfsTer19	p.Q2188Hfs*19	ENST00000324856	NM_006015.4	2188	CAGAAGGGCAGTATCGGCAACCTCCTGGGCTTCCTAGAGGACAGCCTTGCCGCc/c																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008317	29008317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	60	331	0	ENST00000282397.4:c.554T>C	p.Ile185Thr	p.I185T	ENST00000282397	NM_002019.4	185	aTc/aCc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404372	139404372	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	163	902	0	ENST00000277541.6:c.2782A>G	p.Thr928Ala	p.T928A	ENST00000277541	NM_017617.3	928	Acg/Gcg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242470	+	missense_variant	Missense_Mutation	ONP	GAATT	GAATT	ATTCC			P-0049332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	126	547	1	ENST00000275493.2:c.2236_2240delinsATTCC	p.Glu746_Leu747delinsIlePro	p.E746_L747delinsIP	ENST00000275493	NM_005228.3	746	GAATTa/ATTCCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	28	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771923	135771923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	46	520	0	ENST00000298552.3:c.3194C>T	p.Thr1065Met	p.T1065M	ENST00000298552	NM_001162426.1	1065	aCg/aTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971116	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0049334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	37	540	0	ENST00000304494.5:c.242_243del	p.Pro81ArgfsTer38	p.P81Rfs*38	ENST00000304494	NM_000077.4	81	cCC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971116	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0049334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	37	540	0	ENST00000304494.5:c.242_243del	p.Pro81ArgfsTer38	p.P81Rfs*38	ENST00000304494	NM_000077.4	81	cCC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971116	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0049334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	37	540	0	ENST00000304494.5:c.242_243del	p.Pro81ArgfsTer38	p.P81Rfs*38	ENST00000304494	NM_000077.4	81	cCC/c																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221720	55221720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	34	413	0	ENST00000275493.2:c.764G>A	p.Arg255Gln	p.R255Q	ENST00000275493	NM_005228.3	255	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108128246	108128247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	36	369	0	ENST00000278616.4:c.2294dup	p.Asn765LysfsTer2	p.N765Kfs*2	ENST00000278616	NM_000051.3	763	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0049335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	234	477	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578133	7578473	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGG	CACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGG	-			P-0049335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	156	574	0	ENST00000269305.4:c.457_672+44del		p.X153_splice	ENST00000269305	NM_001126112.2	153																																																																															
ARID2	196528	MSKCC	GRCh37	12	46230604	46230604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	33	455	0	ENST00000334344.6:c.853C>T	p.Arg285Trp	p.R285W	ENST00000334344	NM_152641.2	285	Cgg/Tgg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658481	3658481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140876043		P-0049337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	34	597	0	ENST00000294008.3:c.485C>T	p.Thr162Met	p.T162M	ENST00000294008	NM_032444.2	162	aCg/aTg																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165816	118165816	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	170	502	0	ENST00000369448.3:c.326G>C	p.Arg109Thr	p.R109T	ENST00000369448	NM_017709.3	109	aGa/aCa																																																																														
NUF2	83540	MSKCC	GRCh37	1	163313616	163313616	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	120	220	0	ENST00000271452.3:c.763A>C	p.Lys255Gln	p.K255Q	ENST00000271452	NM_145697.2	255	Aaa/Caa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720848	89720849	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0049346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			-1	315	292	0	ENST00000371953.3:c.1001dup	p.Asn334LysfsTer9	p.N334Kfs*9	ENST00000371953	NM_000314.4	333	-/A																																																																														
PAK1	5058	MSKCC	GRCh37	11	77090987	77090987	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	209	446	0	ENST00000356341.3:c.243T>G	p.Phe81Leu	p.F81L	ENST00000356341	NM_002576.4	81	ttT/ttG																																																																														
DIS3	22894	MSKCC	GRCh37	13	73352342	73352342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	195	374	0	ENST00000377767.4:c.563G>A	p.Gly188Glu	p.G188E	ENST00000377767	NM_014953.3	188	gGa/gAa																																																																														
NF2	4771	MSKCC	GRCh37	22	29999995	29999995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	184	387	1	ENST00000338641.4:c.8G>A	p.Gly3Glu	p.G3E	ENST00000338641	NM_000268.3	3	gGg/gAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540146	187540146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	177	416	0	ENST00000441802.2:c.7594G>A	p.Val2532Ile	p.V2532I	ENST00000441802	NM_005245.3	2532	Gta/Ata																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0049347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	27	396	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713326	43713326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	302	520	0	ENST00000382044.4:c.4147G>T	p.Asp1383Tyr	p.D1383Y	ENST00000382044	NM_001141980.1	1383	Gat/Tat																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856424	111856424	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	22	100	0	ENST00000341259.2:c.475A>C	p.Thr159Pro	p.T159P	ENST00000341259	NM_005475.2	159	Acc/Ccc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106236	27106264	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGAACATCAAGATCCTAGAGGACGAAC	CCGGAACATCAAGATCCTAGAGGACGAAC	-			P-0049348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	196	359	1	ENST00000324856.7:c.5849_5877del	p.Arg1950ProfsTer3	p.R1950Pfs*3	ENST00000324856	NM_006015.4	1949	caCCGGAACATCAAGATCCTAGAGGACGAACcc/cacc																																																																														
RB1	5925	MSKCC	GRCh37	13	49037947	49037948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATCTTCCTCATGCTGTTCAGGAGGT			P-0049349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	105	321	0	ENST00000267163.4:c.2188_2211+2dup		p.-729fs	ENST00000267163	NM_000321.2	729	-/GATCTTCCTCATGCTGTTCAGGAGGT																																																																														
PAK7	0	MSKCC	GRCh37	20	9546647	9546647	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	34	392	0	ENST00000353224.5:c.1375T>A	p.Ser459Thr	p.S459T	ENST00000353224	NM_177990.2	459	Tca/Aca																																																																														
EP300	2033	MSKCC	GRCh37	22	41574674	41574674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	291	605	0	ENST00000263253.7:c.6959C>T	p.Ser2320Phe	p.S2320F	ENST00000263253	NM_001429.3	2320	tCc/tTc																																																																														
BCL6	604	MSKCC	GRCh37	3	187447174	187447174	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	240	486	0	ENST00000232014.4:c.1019A>T	p.Gln340Leu	p.Q340L	ENST00000232014	NM_001130845.1	340	cAg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	154	164	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	156	158	0				ENST00000310581	NM_198253.2																																																																																
BCL6	604	MSKCC	GRCh37	3	187443345	187443345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	130	258	0	ENST00000232014.4:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000232014	NM_001130845.1	594	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89712008	89712008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	37	119	0	ENST00000371953.3:c.626G>T	p.Gly209Val	p.G209V	ENST00000371953	NM_000314.4	209	gGa/gTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245513	153245513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	79	212	0	ENST00000281708.4:c.1678G>C	p.Asp560His	p.D560H	ENST00000281708	NM_033632.3	560	Gat/Cat																																																																														
CDH1	999	MSKCC	GRCh37	16	68863656	68863656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	220	296	0	ENST00000261769.5:c.2395C>T	p.Pro799Ser	p.P799S	ENST00000261769	NM_004360.3	799	Ccc/Tcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106662	27106662	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	127	394	0	ENST00000324856.7:c.6273G>A	p.Trp2091Ter	p.W2091*	ENST00000324856	NM_006015.4	2091	tgG/tgA																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372190	55372190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	69	230	2	ENST00000297316.4:c.880C>T	p.His294Tyr	p.H294Y	ENST00000297316	NM_022454.3	294	Cac/Tac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859492	151859492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	185	291	0	ENST00000262189.6:c.11170G>A	p.Glu3724Lys	p.E3724K	ENST00000262189	NM_170606.2	3724	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68863596	68863596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	290	354	0	ENST00000261769.5:c.2335C>T	p.Arg779Trp	p.R779W	ENST00000261769	NM_004360.3	779	Cgg/Tgg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188989	11188989	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	61	241	0	ENST00000361445.4:c.5734G>C	p.Asp1912His	p.D1912H	ENST00000361445	NM_004958.3	1912	Gat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105695	27105705	+	frameshift_variant	Frame_Shift_Del	DEL	TAGGTCCTAAA	TAGGTCCTAAA	-			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	149	191	0	ENST00000324856.7:c.5306_5316del	p.Leu1769ProfsTer11	p.L1769Pfs*11	ENST00000324856	NM_006015.4	1769	cTAGGTCCTAAA/c																																																																														
SDHC	6391	MSKCC	GRCh37	1	161293444	161293444	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	118	203	0	ENST00000367975.2:c.61C>G	p.Gln21Glu	p.Q21E	ENST00000367975	NM_003001.3	21	Cag/Gag																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14303150	14303150	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	99	182	0	ENST00000256196.4:c.525C>G	p.Ile175Met	p.I175M	ENST00000256196		175	atC/atG																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67198903	67198903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	146	383	0	ENST00000312629.5:c.374C>T	p.Ser125Leu	p.S125L	ENST00000312629	NM_003952.2	125	tCa/tTa																																																																														
EED	8726	MSKCC	GRCh37	11	85979536	85979536	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	147	160	0	ENST00000263360.6:c.899C>G	p.Ser300Cys	p.S300C	ENST00000263360	NM_003797.3	300	tCt/tGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343567	118343567	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	116	246	0	ENST00000534358.1:c.1693C>G	p.Leu565Val	p.L565V	ENST00000534358	NM_005933.3	565	Ctg/Gtg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343898	118343898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	123	269	0	ENST00000534358.1:c.2024C>T	p.Ser675Leu	p.S675L	ENST00000534358	NM_005933.3	675	tCa/tTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344111	118344111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	127	222	0	ENST00000534358.1:c.2237C>G	p.Ser746Cys	p.S746C	ENST00000534358	NM_005933.3	746	tCt/tGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344314	118344314	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	122	191	0	ENST00000534358.1:c.2440C>G	p.Gln814Glu	p.Q814E	ENST00000534358	NM_005933.3	814	Cag/Gag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344404	118344404	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	82	130	0	ENST00000534358.1:c.2530C>G	p.Gln844Glu	p.Q844E	ENST00000534358	NM_005933.3	844	Cag/Gag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426147	49426147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	269	403	0	ENST00000301067.7:c.12341G>A	p.Gly4114Glu	p.G4114E	ENST00000301067	NM_003482.3	4114	gGa/gAa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865543	57865543	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	199	409	0	ENST00000228682.2:c.3020C>G	p.Thr1007Arg	p.T1007R	ENST00000228682	NM_005269.2	1007	aCa/aGa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233401	69233401	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	132	199	0	ENST00000462284.1:c.1266G>C	p.Arg422Ser	p.R422S	ENST00000462284	NM_002392.5	422	agG/agC																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134434	41134434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	92	282	0	ENST00000379561.5:c.1194G>T	p.Met398Ile	p.M398I	ENST00000379561	NM_002015.3	398	atG/atT																																																																														
RB1	5925	MSKCC	GRCh37	13	48916775	48916895	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTATCTTTATTGCAGCAGTTGACCTAGATGAGATGTCGTTCACTTTTACTGAGCTACAGAAAAACATAGAAATCAGGTAAAGTTTCTTGTATAAATATAAGCCTCTGCCATAAAAGGAAAC	GTATCTTTATTGCAGCAGTTGACCTAGATGAGATGTCGTTCACTTTTACTGAGCTACAGAAAAACATAGAAATCAGGTAAAGTTTCTTGTATAAATATAAGCCTCTGCCATAAAAGGAAAC	-			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	37	132	0	ENST00000267163.4:c.306_380+46del		p.X102_splice	ENST00000267163	NM_000321.2	102																																																																															
CDH1	999	MSKCC	GRCh37	16	68867208	68867208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	228	283	0	ENST00000261769.5:c.2455G>C	p.Asp819His	p.D819H	ENST00000261769	NM_004360.3	819	Gat/Cat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347087	89347087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	223	426	0	ENST00000301030.4:c.5863G>A	p.Glu1955Lys	p.E1955K	ENST00000301030	NM_001256183.1	1955	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866119	37866119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	125	304	0	ENST00000269571.5:c.628G>A	p.Glu210Lys	p.E210K	ENST00000269571		210	Gag/Aag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10305520	10305520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	99	329	0	ENST00000340748.4:c.56C>T	p.Ser19Leu	p.S19L	ENST00000340748		19	tCg/tTg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714623	52714623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	119	434	0	ENST00000322088.6:c.381C>G	p.His127Gln	p.H127Q	ENST00000322088	NM_014225.5	127	caC/caG																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96919763	96919763	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	72	348	0	ENST00000258439.3:c.500C>G	p.Ser167Cys	p.S167C	ENST00000258439	NM_001193304.2	167	tCc/tGc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12447438	12447438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	276	372	0	ENST00000287820.6:c.677C>G	p.Ser226Cys	p.S226C	ENST00000287820	NM_015869.4	226	tCc/tGc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070399	37070399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	105	186	1	ENST00000231790.2:c.1534G>A	p.Glu512Lys	p.E512K	ENST00000231790	NM_000249.3	512	Gaa/Aaa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38963026	38963026	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	104	174	0	ENST00000357387.3:c.1518G>C	p.Gln506His	p.Q506H	ENST00000357387	NM_152756.3	506	caG/caC																																																																														
APC	324	MSKCC	GRCh37	5	112177851	112177851	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	74	136	0	ENST00000257430.4:c.6560G>C	p.Gly2187Ala	p.G2187A	ENST00000257430	NM_000038.5	2187	gGa/gCa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816896	32816896	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	182	227	0	ENST00000354258.4:c.1429-1G>C		p.X477_splice	ENST00000354258	NM_000593.5	477																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152012253	152012253	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	222	177	0	ENST00000262189.6:c.560C>G	p.Ser187Ter	p.S187*	ENST00000262189	NM_170606.2	187	tCa/tGa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820595	44820595	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	230	89	0	ENST00000377967.4:c.292C>T	p.Gln98Ter	p.Q98*	ENST00000377967	NM_021140.2	98	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	86	770	0	ENST00000301067.7:c.15536G>A	p.Arg5179His	p.R5179H	ENST00000301067	NM_003482.3	5179	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427057	49427058	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0049436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	56	689	0	ENST00000301067.7:c.11430dup	p.Gln3811AlafsTer201	p.Q3811Afs*201	ENST00000301067	NM_003482.3	3810	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	75	679	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RB1	5925	MSKCC	GRCh37	13	48954327	48954327	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	79	338	0	ENST00000267163.4:c.1448A>G	p.His483Arg	p.H483R	ENST00000267163	NM_000321.2	483	cAt/cGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845806	72845806	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	74	631	1	ENST00000268489.5:c.3661C>T	p.Gln1221Ter	p.Q1221*	ENST00000268489	NM_006885.3	1221	Cag/Tag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763490	59763490	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	108	594	0	ENST00000259008.2:c.2612A>T	p.His871Leu	p.H871L	ENST00000259008	NM_032043.2	871	cAt/cTt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221249	36221249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	222	821	2	ENST00000222270.7:c.5083G>A	p.Val1695Met	p.V1695M	ENST00000222270	NM_014727.1	1695	Gtg/Atg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44733213	44733213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	166	291	0	ENST00000377967.4:c.205A>G	p.Thr69Ala	p.T69A	ENST00000377967	NM_021140.2	69	Acg/Gcg																																																																														
TEK	7010	MSKCC	GRCh37	9	27205056	27205056	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	391	569	0	ENST00000380036.4:c.2360del	p.Asn787ThrfsTer2	p.N787Tfs*2	ENST00000380036	NM_000459.3	786	cAa/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427060	49427061	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	461	747	0	ENST00000301067.7:c.11427_11428del	p.Leu3810AlafsTer201	p.L3810Afs*201	ENST00000301067	NM_003482.3	3809	gtGTtg/gttg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2108798	2108798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	602	911	0	ENST00000219476.3:c.899G>T	p.Gly300Val	p.G300V	ENST00000219476	NM_000548.3	300	gGc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578194	7578195	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	461	711	0	ENST00000269305.4:c.654_655del	p.Pro219LeufsTer2	p.P219Lfs*2	ENST00000269305	NM_001126112.2	218	gtGCcc/gtcc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46602958	46602958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	463	814	2	ENST00000263734.3:c.1016G>T	p.Cys339Phe	p.C339F	ENST00000263734	NM_001430.4	339	tGt/tTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530162	212530162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	116	418	0	ENST00000342788.4:c.1757G>C	p.Gly586Ala	p.G586A	ENST00000342788	NM_005235.2	586	gGc/gCc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117629959	117629970	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ATCATCAGGACA	ATCATCAGGACA	-			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	118	366	0	ENST00000368508.3:c.6556_6567del	p.Cys2186_Asp2189del	p.C2186_D2189del	ENST00000368508	NM_002944.2	2186	TGTCCTGATGAT/-																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508771	106508798	+	frameshift_variant	Frame_Shift_Del	DEL	GAAATCTCTGATGGATATTCCCGAAAGC	GAAATCTCTGATGGATATTCCCGAAAGC	-			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	297	656	0	ENST00000359195.3:c.765_792del	p.Lys255AsnfsTer30	p.K255Nfs*30	ENST00000359195	NM_002649.2	255	aaGAAATCTCTGATGGATATTCCCGAAAGC/aa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509340	106509340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	318	658	1	ENST00000359195.3:c.1334C>T	p.Ala445Val	p.A445V	ENST00000359195	NM_002649.2	445	gCc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0049444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	326	590	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101300	27101300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	211	777	0	ENST00000324856.7:c.4582C>T	p.Arg1528Ter	p.R1528*	ENST00000324856	NM_006015.4	1528	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106438	27106439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0049444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	177	505	0	ENST00000324856.7:c.6050_6051dup	p.His2018CysfsTer13	p.H2018Cfs*13	ENST00000324856	NM_006015.4	2017	ctg/cTGtg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0049451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	12	440	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0049451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	15	640	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087458	27087458	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	59	590	0	ENST00000324856.7:c.2032C>T	p.Gln678Ter	p.Q678*	ENST00000324856	NM_006015.4	678	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577137	7577137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	111	564	0	ENST00000269305.4:c.801del	p.Asn268ThrfsTer77	p.N268Tfs*77	ENST00000269305	NM_001126112.2	267	cgG/cg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279965	18279965	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	105	517	0	ENST00000222254.8:c.2048A>G	p.Tyr683Cys	p.Y683C	ENST00000222254	NM_005027.3	683	tAc/tGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087426	27087426	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	45	598	0	ENST00000324856.7:c.2000C>G	p.Ser667Cys	p.S667C	ENST00000324856	NM_006015.4	667	tCc/tGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087552	27087552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	65	641	0	ENST00000324856.7:c.2126C>G	p.Ser709Cys	p.S709C	ENST00000324856	NM_006015.4	709	tCt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087921	27087921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	51	595	0	ENST00000324856.7:c.2208C>G	p.Ile736Met	p.I736M	ENST00000324856	NM_006015.4	736	atC/atG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416654	49416654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	101	443	0	ENST00000301067.7:c.16057C>T	p.His5353Tyr	p.H5353Y	ENST00000301067	NM_003482.3	5353	Cat/Tat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948023	178948023	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	21	256	0	ENST00000263967.3:c.2795T>C	p.Ile932Thr	p.I932T	ENST00000263967	NM_006218.2	932	aTa/aCa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508561	106508561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	60	365	0	ENST00000359195.3:c.555G>T	p.Met185Ile	p.M185I	ENST00000359195	NM_002649.2	185	atG/atT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440487	49440488	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0049453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	110	615	0	ENST00000301067.7:c.4322_4323del	p.Arg1441ProfsTer5	p.R1441Pfs*5	ENST00000301067	NM_003482.3	1441	cGC/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0049456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	23	336	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	61	544	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385239	41385239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	19	498	0	ENST00000373198.4:c.722G>A	p.Arg241His	p.R241H	ENST00000373198	NM_133170.3	241	cGt/cAt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932259	36932259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	572	729	0	ENST00000361632.4:c.2210C>T	p.Ser737Phe	p.S737F	ENST00000361632		737	tCc/tTc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	427	507	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228613001	228613001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	137	460	0	ENST00000366696.1:c.26G>A	p.Arg9His	p.R9H	ENST00000366696	NM_003493.2	9	cGc/cAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435088	18435088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	96	328	0	ENST00000266497.5:c.73C>T	p.Leu25Phe	p.L25F	ENST00000266497		25	Ctc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579854	7579854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	301	630	0	ENST00000269305.4:c.59C>T	p.Ser20Leu	p.S20L	ENST00000269305	NM_001126112.2	20	tCa/tTa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687567	37687567	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	179	283	0	ENST00000447079.4:c.4471T>G	p.Ter1491GluextTer32	p.*1491Eext*32	ENST00000447079	NM_015083.1	1491	Taa/Gaa																																																																														
CIC	23152	MSKCC	GRCh37	19	42793099	42793099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	166	745	0	ENST00000575354.2:c.991C>T	p.Pro331Ser	p.P331S	ENST00000575354	NM_015125.3	331	Ccg/Tcg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960074	134960074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	137	568	0	ENST00000398015.3:c.2431G>A	p.Gly811Arg	p.G811R	ENST00000398015	NM_004441.4	811	Ggg/Agg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190776	185190776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	144	482	0	ENST00000265026.3:c.1657A>G	p.Arg553Gly	p.R553G	ENST00000265026	NM_004721.4	553	Aga/Gga																																																																														
TP63	8626	MSKCC	GRCh37	3	189526275	189526275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	268	529	0	ENST00000264731.3:c.539C>T	p.Ser180Phe	p.S180F	ENST00000264731	NM_003722.4	180	tCc/tTc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750441	41750441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	127	502	0	ENST00000226382.2:c.187G>A	p.Gly63Arg	p.G63R	ENST00000226382	NM_003924.3	63	Gga/Aga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244148	153244148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	159	477	0	ENST00000281708.4:c.2009G>A	p.Gly670Glu	p.G670E	ENST00000281708	NM_033632.3	670	gGa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	70	254	0				ENST00000310581	NM_198253.2																																																																																
MSH3	4437	MSKCC	GRCh37	5	80057405	80057405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	76	295	0	ENST00000265081.6:c.1804C>T	p.His602Tyr	p.H602Y	ENST00000265081	NM_002439.4	602	Cat/Tat																																																																														
SYK	6850	MSKCC	GRCh37	9	93641169	93641169	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	68	483	0	ENST00000375746.1:c.1515A>C	p.Gln505His	p.Q505H	ENST00000375746	NM_001174167.1	505	caA/caC																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0049458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	99	568	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	107	579	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	78	494	0	ENST00000263967.3:c.1637A>T	p.Gln546Leu	p.Q546L	ENST00000263967	NM_006218.2	546	cAg/cTg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045845	143045845	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	53	419	0	ENST00000262992.4:c.1789C>T	p.Arg597Ter	p.R597*	ENST00000262992	NM_001101669.1	597	Cga/Tga																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271353	26271353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	46	558	0	ENST00000305910.3:c.260G>T	p.Ser87Ile	p.S87I	ENST00000305910	NM_003534.2	87	aGt/aTt																																																																														
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	190	202	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0049144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	128	284	0	ENST00000275493.2:c.2281G>T	p.Asp761Tyr	p.D761Y	ENST00000275493	NM_005228.3	761	Gat/Tat																																																																														
BRAF	673	MSKCC	GRCh37	7	140477854	140477854	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0049144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	508	444	0	ENST00000288602.6:c.1454T>G	p.Leu485Trp	p.L485W	ENST00000288602	NM_004333.4	485	tTg/tGg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061242	38061247	+	inframe_deletion	In_Frame_Del	DEL	GTCCGG	GTCCGG	-			P-0049144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	280	553	0	ENST00000250448.2:c.742_747del	p.Pro248_Asp249del	p.P248_D249del	ENST00000250448	NM_004496.3	248	CCGGAC/-																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821412	72821431	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGAGGTAGATGCGGTGCT	TGCGAGGTAGATGCGGTGCT	-			P-0049144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	309	478	0	ENST00000268489.5:c.10744_10763del	p.Ser3582ValfsTer77	p.S3582Vfs*77	ENST00000268489	NM_006885.3	3582	AGCACCGCATCTACCTCGCAg/g																																																																														
KIT	3815	MSKCC	GRCh37	4	55602760	55602760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	277	325	0	ENST00000288135.5:c.2581G>A	p.Glu861Lys	p.E861K	ENST00000288135	NM_000222.2	861	Gag/Aag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678757	52678757	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	208	369	1	ENST00000394830.3:c.862G>T	p.Glu288Ter	p.E288*	ENST00000394830	NM_018313.4	288	Gaa/Taa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180041074	180041076	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0049145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	212	736	0	ENST00000261937.6:c.3323_3325del	p.Phe1108del	p.F1108del	ENST00000261937	NM_182925.4	1108	tTCTct/tct																																																																														
TET1	80312	MSKCC	GRCh37	10	70333965	70333965	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	216	273	0	ENST00000373644.4:c.1870T>G	p.Cys624Gly	p.C624G	ENST00000373644	NM_030625.2	624	Tgt/Ggt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581361	48581361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0049145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	122	385	0	ENST00000342988.3:c.665C>T	p.Thr222Ile	p.T222I	ENST00000342988	NM_005359.5	222	aCa/aTa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096873	11096873	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	311	821	3	ENST00000344626.4:c.364T>A	p.Ser122Thr	p.S122T	ENST00000344626	NM_003072.3	122	Tcg/Acg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138620	11138620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	321	445	0	ENST00000344626.4:c.3376C>A	p.Leu1126Ile	p.L1126I	ENST00000344626	NM_003072.3	1126	Ctt/Att																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437179	52437179	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0049145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	339	556	0	ENST00000460680.1:c.1865del	p.Leu622Ter	p.L622*	ENST00000460680	NM_004656.3	622	tTg/tg																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427637	72427637	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0049145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	140	382	1	ENST00000477973.2:c.851C>T	p.Gln285Ter	p.Q285*	ENST00000477973	NM_012234.5	285	Cag/Tag																																																																														
VHL	7428	MSKCC	GRCh37	3	10191560	10191570	+	protein_altering_variant	In_Frame_Del	DEL	TACGAAGATCT	TACGAAGATCT	AA			P-0049145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	307	484	2	ENST00000256474.2:c.553_563delinsAA	p.Tyr185_Leu188delinsLys	p.Y185_L188delinsK	ENST00000256474	NM_000551.3	185	TACGAAGATCTg/AAg																																																																														
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	230	313	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873811	35873811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	119	356	0	ENST00000216797.5:c.40del	p.Glu14ArgfsTer7	p.E14Rfs*7	ENST00000216797	NM_020529.2	14	Gag/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			698	51	602	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	40	395	1				ENST00000310581	NM_198253.2																																																																																
DDR2	4921	MSKCC	GRCh37	1	162746037	162746037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	28	359	0	ENST00000367921.3:c.2160G>C	p.Lys720Asn	p.K720N	ENST00000367921	NM_006182.2	720	aaG/aaC																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961366	15961366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	36	430	0	ENST00000268712.3:c.6023G>C	p.Arg2008Thr	p.R2008T	ENST00000268712	NM_006311.3	2008	aGa/aCa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753040	57753040	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	29	323	0	ENST00000274289.3:c.976G>C	p.Asp326His	p.D326H	ENST00000274289	NM_006622.3	326	Gat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971199	21971199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	49	551	0	ENST00000304494.5:c.159G>C	p.Met53Ile	p.M53I	ENST00000304494	NM_000077.4	53	atG/atC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971199	21971199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	49	551	0	ENST00000304494.5:c.159G>C	p.Met53Ile	p.M53I	ENST00000304494	NM_000077.4	53	atG/atC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971199	21971199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	49	551	0	ENST00000304494.5:c.159G>C	p.Met53Ile	p.M53I	ENST00000304494	NM_000077.4	53	atG/atC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	609	348	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	609	348	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	605	524	0	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574004	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0048862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	249	504	0	ENST00000269305.4:c.1023_1024delCCinsTT	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	341	ttCCga/ttTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	609	348	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55225397	55225397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	140	321	0	ENST00000275493.2:c.1249C>T	p.Leu417Phe	p.L417F	ENST00000275493	NM_005228.3	417	Ctc/Ttc																																																																														
HGF	3082	MSKCC	GRCh37	7	81335737	81335737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	76	199	0	ENST00000222390.5:c.1623G>T	p.Leu541Phe	p.L541F	ENST00000222390	NM_000601.4	541	ttG/ttT																																																																														
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	11	426	1	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	201	718	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50920307	50920307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	212	701	9	ENST00000440232.2:c.3073G>A	p.Val1025Met	p.V1025M	ENST00000440232	NM_002691.3	1025	Gtg/Atg																																																																														
ATM	472	MSKCC	GRCh37	11	108159822	108159822	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	42	114	0	ENST00000278616.4:c.4228A>G	p.Lys1410Glu	p.K1410E	ENST00000278616	NM_000051.3	1410	Aaa/Gaa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643455	38643455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	127	522	0	ENST00000299084.4:c.925G>A	p.Val309Met	p.V309M	ENST00000299084	NM_152594.2	309	Gtg/Atg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020796	37020796	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0049005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	132	374	0	ENST00000358127.4:c.49C>T	p.His17Tyr	p.H17Y	ENST00000358127	NM_001280556.1	17	Cat/Tat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938563	44938563	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	138	455	0	ENST00000377967.4:c.3111G>C	p.Gln1037His	p.Q1037H	ENST00000377967	NM_021140.2	1037	caG/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	172	753	0	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602252	10602252	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0049006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	97	583	0	ENST00000171111.5:c.1325+1G>A		p.X442_splice	ENST00000171111	NM_203500.1	442																																																																															
WHSC1	0	MSKCC	GRCh37	4	1955060	1955060	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0049006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	68	557	0	ENST00000382891.5:c.2147C>A	p.Ser716Ter	p.S716*	ENST00000382891	NM_133335.3	716	tCa/tAa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741823	145741823	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	78	783	0	ENST00000428558.2:c.680T>C	p.Val227Ala	p.V227A	ENST00000428558	NM_004260.3	227	gTc/gCc																																																																														
BTK	695	MSKCC	GRCh37	X	100615121	100615121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	61	256	0	ENST00000308731.7:c.794C>G	p.Pro265Arg	p.P265R	ENST00000308731	NM_000061.2	265	cCt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380277	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACCTGCTGTGTCGAGAATATCCAAGA			P-0049113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	46	420	0	ENST00000256078.4:c.155_181dup	p.Leu52_Gly60dup	p.L52_G60dup	ENST00000256078	NM_033360.2	52	caa/cTCTTGGATATTCTCGACACAGCAGGTCaa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30047522	30047522	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0049113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	68	344	0	ENST00000331968.5:c.2479C>G	p.Arg827Gly	p.R827G	ENST00000331968	NM_002742.2	827	Cgc/Ggc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44879855	44879855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0049117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	83	137	0	ENST00000377967.4:c.444G>A	p.Trp148Ter	p.W148*	ENST00000377967	NM_021140.2	148	tgG/tgA																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023122	31023128	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCTCA	TGGCTCA	GG			P-0049117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	145	534	1	ENST00000375687.4:c.2607_2613delinsGG	p.Gly870ValfsTer8	p.G870Vfs*8	ENST00000375687	NM_015338.5	869	ggTGGCTCA/ggGG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0049118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	283	503	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0049118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	283	503	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098800	178098800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	744	578	0	ENST00000397062.3:c.245A>G	p.Glu82Gly	p.E82G	ENST00000397062	NM_006164.4	82	gAa/gGa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419951	41419951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	225	544	0	ENST00000373198.4:c.370G>A	p.Val124Met	p.V124M	ENST00000373198	NM_133170.3	124	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0049118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	283	503	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	240	479	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	240	479	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30253850	30253850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	247	503	0	ENST00000307677.4:c.604G>A	p.Glu202Lys	p.E202K	ENST00000307677	NM_138578.1	202	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0049118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	194	318	0				ENST00000310581	NM_198253.2																																																																																
ARID2	196528	MSKCC	GRCh37	12	46123674	46123674	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0049118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	111	262	0	ENST00000334344.6:c.55T>G	p.Phe19Val	p.F19V	ENST00000334344	NM_152641.2	19	Ttc/Gtc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031937	10031937	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	178	693	0	ENST00000330684.3:c.886A>T	p.Ile296Phe	p.I296F	ENST00000330684	NM_001134407.1	296	Att/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577101	7577109	+	inframe_deletion	In_Frame_Del	DEL	CCCAGGACA	CCCAGGACA	-			P-0049118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	354	710	0	ENST00000269305.4:c.829_837del	p.Cys277_Gly279del	p.C277_G279del	ENST00000269305	NM_001126112.2	277	TGTCCTGGG/-																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912242	32912258	+	frameshift_variant	Frame_Shift_Del	DEL	AACTTCTGCAGAGGTAC	AACTTCTGCAGAGGTAC	-			P-0049119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	151	370	0	ENST00000380152.3:c.3751_3767del	p.Thr1251SerfsTer8	p.T1251Sfs*8	ENST00000380152		1250	gaAACTTCTGCAGAGGTACat/gaat																																																																														
MGA	23269	MSKCC	GRCh37	15	42000359	42000359	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	122	281	0	ENST00000219905.7:c.2378A>T	p.Lys793Met	p.K793M	ENST00000219905	NM_001164273.1	793	aAg/aTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134688	2134688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	263	652	2	ENST00000219476.3:c.4465G>A	p.Ala1489Thr	p.A1489T	ENST00000219476	NM_000548.3	1489	Gca/Aca																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134505	30134505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	89	208	0	ENST00000263025.4:c.26G>T	p.Gly9Val	p.G9V	ENST00000263025	NM_002746.2	9	gGc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			557	234	436	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0005905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			733	638	1040	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806555	1806555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	448	884	0	ENST00000260795.2:c.1271C>T	p.Ser424Phe	p.S424F	ENST00000260795		424	tCc/tTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638375	176638375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			70	19	418	0	ENST00000439151.2:c.2975C>T	p.Ser992Phe	p.S992F	ENST00000439151	NM_022455.4	992	tCt/tTt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652112	36652113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	759	733	0	ENST00000244741.5:c.237dupC	p.Thr80HisfsTer9	p.T80Hfs*9	ENST00000244741	NM_000389.4	78	-/C																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762246	43762246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			63	12	297	1	ENST00000382044.4:c.1199C>T	p.Ser400Leu	p.S400L	ENST00000382044	NM_001141980.1	400	tCa/tTa																																																																														
CDH1	999	MSKCC	GRCh37	16	68847225	68847225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			76	20	294	0	ENST00000261769.5:c.1147C>G	p.Gln383Glu	p.Q383E	ENST00000261769	NM_004360.3	383	Cag/Gag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828561	72828561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	34	475	0	ENST00000268489.5:c.8020A>G	p.Ile2674Val	p.I2674V	ENST00000268489	NM_006885.3	2674	Att/Gtt																																																																														
EP300	2033	MSKCC	GRCh37	22	41527422	41527422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			74	25	353	0	ENST00000263253.7:c.1313G>C	p.Gly438Ala	p.G438A	ENST00000263253	NM_001429.3	438	gGa/gCa																																																																														
EP300	2033	MSKCC	GRCh37	22	41527636	41527636	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			66	12	205	0	ENST00000263253.7:c.1527G>A	p.Met509Ile	p.M509I	ENST00000263253	NM_001429.3	509	atG/atA																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564384	86564384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	158	658	0	ENST00000274376.6:c.116C>A	p.Pro39His	p.P39H	ENST00000274376	NM_002890.2	39	cCc/cAc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984385	201984389	+	protein_altering_variant	In_Frame_Del	DEL	CGTCT	CGTCT	AG			P-0005905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	89	597	1	ENST00000359651.3:c.1050_1054delinsAG	p.Val351_Tyr352delinsAsp	p.V351_Y352delinsD	ENST00000359651		350	ctCGTCTac/ctAGac																																																																														
KDR	3791	MSKCC	GRCh37	4	55961005	55961005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	77	550	0	ENST00000263923.4:c.2935G>A	p.Glu979Lys	p.E979K	ENST00000263923	NM_002253.2	979	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578513	7578513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	160	873	1	ENST00000269305.4:c.417G>T	p.Lys139Asn	p.K139N	ENST00000269305	NM_001126112.2	139	aaG/aaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089641	27089659	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCTTATGGCCCTAACAT	GGCCTTATGGCCCTAACAT	-			P-0030266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	126	718	0	ENST00000324856.7:c.2601_2619del	p.Tyr868IlefsTer17	p.Y868Ifs*17	ENST00000324856	NM_006015.4	866	cGGCCTTATGGCCCTAACATg/cg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660457	67660457	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0030266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	62	356	0	ENST00000264010.4:c.1358-1G>C		p.X453_splice	ENST00000264010	NM_006565.3	453																																																																															
ATR	545	MSKCC	GRCh37	3	142279181	142279198	+	inframe_deletion	In_Frame_Del	DEL	TCTCAATAACAGGATTCT	TCTCAATAACAGGATTCT	-			P-0030266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	58	405	0	ENST00000350721.4:c.1448_1465del	p.Lys483_Glu488del	p.K483_E488del	ENST00000350721	NM_001184.3	483	aAGAATCCTGTTATTGAGAtg/atg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149456860	149456860	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	76	607	0	ENST00000286301.3:c.868T>C	p.Ser290Pro	p.S290P	ENST00000286301	NM_005211.3	290	Tcc/Ccc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0044740-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	136	687	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46609735	46609735	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044740-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	18	662	0	ENST00000263734.3:c.2459C>T	p.Ser820Leu	p.S820L	ENST00000263734	NM_001430.4	820	tCa/tTa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189444	94189445	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044740-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	46	346	0	ENST00000323929.3:c.1560dup	p.Glu521Ter	p.E521*	ENST00000323929	NM_005591.3	520	-/T																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720659	89720662	+	frameshift_variant	Frame_Shift_Del	DEL	GTTT	GTTT	CC			P-0044740-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			81	115	398	5	ENST00000371953.3:c.810_813delinsCC	p.Met270IlefsTer27	p.M270Ifs*27	ENST00000371953	NM_000314.4	270	atGTTT/atCC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023006	27023006	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	96	61	0	ENST00000324856.7:c.112G>T	p.Glu38Ter	p.E38*	ENST00000324856	NM_006015.4	38	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106255	27106255	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	42	440	0	ENST00000324856.7:c.5866G>C	p.Glu1956Gln	p.E1956Q	ENST00000324856	NM_006015.4	1956	Gag/Cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106279	27106279	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	51	487	2	ENST00000324856.7:c.5890G>T	p.Glu1964Ter	p.E1964*	ENST00000324856	NM_006015.4	1964	Gag/Tag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120720	115120720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	359	621	0	ENST00000257566.3:c.286G>A	p.Glu96Lys	p.E96K	ENST00000257566	NM_016569.3	96	Gaa/Aaa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120991	115120991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	321	529	0	ENST00000257566.3:c.15G>A	p.Met5Ile	p.M5I	ENST00000257566	NM_016569.3	5	atG/atA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954222	32954222	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			67	22	410	0	ENST00000380152.3:c.9196C>T	p.Gln3066Ter	p.Q3066*	ENST00000380152		3066	Cag/Tag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43739612	43739612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			77	11	332	0	ENST00000382044.4:c.2788C>T	p.Leu930Phe	p.L930F	ENST00000382044	NM_001141980.1	930	Ctt/Ttt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655374	67655374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			77	30	300	0	ENST00000264010.4:c.1237C>A	p.His413Asn	p.H413N	ENST00000264010	NM_006565.3	413	Cat/Aat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351980	89351980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			893	398	618	0	ENST00000301030.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000301030	NM_001256183.1	324	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577077	7577079	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	TT			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	140	595	0	ENST00000269305.4:c.859_861delinsAA	p.Glu287LysfsTer58	p.E287Kfs*58	ENST00000269305	NM_001126112.2	287	GAG/AA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	144	562	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	137	534	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1315	217	331	0				ENST00000310581	NM_198253.2																																																																																
TSC1	7248	MSKCC	GRCh37	9	135802598	135802598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			72	11	219	0	ENST00000298552.3:c.200C>T	p.Pro67Leu	p.P67L	ENST00000298552	NM_001162426.1	67	cCa/cTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357577	89357577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	22	0	0	ENST00000301030.4:c.241G>A	p.Glu81Lys	p.E81K	ENST00000301030	NM_001256183.1	81	Gag/Aag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89851368	89851368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			923	16	0	0	ENST00000389301.3:c.1364C>A	p.Ser455Tyr	p.S455Y	ENST00000389301	NM_000135.2	455	tCc/tAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440698	56440698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			524	11	0	0	ENST00000407977.2:c.520G>C	p.Glu174Gln	p.E174Q	ENST00000407977		174	Gag/Cag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250151	39250151	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			23	8	0	0	ENST00000402219.2:c.1418C>G	p.Ser473Ter	p.S473*	ENST00000402219	NM_005633.3	473	tCa/tGa																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128434827	128434827	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			65	8	0	0	ENST00000265960.3:c.27C>G	p.Ile9Met	p.I9M	ENST00000265960	NM_001006617.1	9	atC/atG																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609994	81609994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048475-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	49	562	3	ENST00000298171.2:c.1592G>A	p.Arg531Gln	p.R531Q	ENST00000298171	NM_000369.2	531	cGg/cAg																																																																														
EP300	2033	MSKCC	GRCh37	22	41556727	41556727	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048475-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	22	529	0	ENST00000263253.7:c.3671+1G>A		p.X1224_splice	ENST00000263253	NM_001429.3	1224																																																																															
EP300	2033	MSKCC	GRCh37	22	41566521	41566521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048475-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	58	670	3	ENST00000263253.7:c.4398G>T	p.Trp1466Cys	p.W1466C	ENST00000263253	NM_001429.3	1466	tgG/tgT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285702	46285702	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048475-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	20	459	0	ENST00000334344.6:c.5061+1G>A		p.X1687_splice	ENST00000334344	NM_152641.2	1687																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692770	89692777	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTGCACAA	TTGCACAA	-			P-0048475-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			168	49	548	0	ENST00000371953.3:c.255_262del	p.Ala86SerfsTer3	p.A86Sfs*3	ENST00000371953	NM_000314.4	85	gTTGCACAA/g																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	151	332	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813307	102813307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	337	548	1	ENST00000307046.8:c.382G>A	p.Asp128Asn	p.D128N	ENST00000307046	NM_001111285.1	128	Gac/Aac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589631	67589632	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATTATATGAAGA			P-0048555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	43	205	0	ENST00000274335.5:c.1397_1408dupTATATGAAGAAT	p.Leu466_Glu469dup	p.L466_E469dup	ENST00000274335		466	aga/agATTATATGAAGAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467856	50467856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	257	616	0	ENST00000331340.3:c.1091C>T	p.Ser364Leu	p.S364L	ENST00000331340	NM_006060.4	364	tCg/tTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	212	329	0				ENST00000310581	NM_198253.2																																																																																
MET	4233	MSKCC	GRCh37	7	116399528	116399528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	200	342	0	ENST00000397752.3:c.2348G>A	p.Gly783Glu	p.G783E	ENST00000397752	NM_000245.2	783	gGa/gAa																																																																														
CBL	867	MSKCC	GRCh37	11	119146732	119146732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	257	481	0	ENST00000264033.4:c.895C>T	p.Arg299Cys	p.R299C	ENST00000264033	NM_005188.3	299	Cgt/Tgt																																																																														
CDC42	998	MSKCC	GRCh37	1	22413029	22413029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	109	184	0	ENST00000344548.3:c.276C>A	p.Asn92Lys	p.N92K	ENST00000344548	NM_001039802.1	92	aaC/aaA																																																																														
RB1	5925	MSKCC	GRCh37	13	49037867	49037869	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ATT	ATT	-			P-0048555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	179	207	0	ENST00000267163.4:c.2109_2111del	p.Ile703del	p.I703del	ENST00000267163	NM_000321.2	703	ATT/-																																																																														
CDK6	1021	MSKCC	GRCh37	7	92300823	92300824	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0048555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	180	376	0	ENST00000265734.4:c.563_564delinsTT	p.Pro188Leu	p.P188L	ENST00000265734	NM_001259.6	188	cCC/cTT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	58	411	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MAX	4149	MSKCC	GRCh37	14	65544683	65544684	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0048792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	104	654	0	ENST00000358664.4:c.242_243del	p.His81ProfsTer5	p.H81Pfs*5	ENST00000358664	NM_002382.4	81	cAC/c																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	177	688	0	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	145	711	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	194	701	0	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247244	153247244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	82	339	0	ENST00000281708.4:c.1558G>A	p.Asp520Asn	p.D520N	ENST00000281708	NM_033632.3	520	Gat/Aat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134252	11134252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	138	537	0	ENST00000344626.4:c.2918G>A	p.Arg973Gln	p.R973Q	ENST00000344626	NM_003072.3	973	cGg/cAg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440379	52440379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	184	529	0	ENST00000460680.1:c.673G>A	p.Asp225Asn	p.D225N	ENST00000460680	NM_004656.3	225	Gac/Aac																																																																														
ALK	238	MSKCC	GRCh37	2	30143521	30143521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	96	375	0	ENST00000389048.3:c.5G>A	p.Gly2Glu	p.G2E	ENST00000389048	NM_004304.4	2	gGa/gAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55087046	55087046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	100	323	1	ENST00000275493.2:c.76G>A	p.Glu26Lys	p.E26K	ENST00000275493	NM_005228.3	26	Gag/Aag																																																																														
IRF4	3662	MSKCC	GRCh37	6	393183	393183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	122	569	0	ENST00000380956.4:c.31G>A	p.Glu11Lys	p.E11K	ENST00000380956	NM_001195286.1	11	Gag/Aag																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023126	33023126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	114	497	0	ENST00000300177.4:c.235G>A	p.Glu79Lys	p.E79K	ENST00000300177	NM_001191322.1	79	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860556	45860556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	199	705	0	ENST00000391945.4:c.1451C>T	p.Thr484Met	p.T484M	ENST00000391945	NM_000400.3	484	aCg/aTg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128051153	128051153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	161	616	0	ENST00000285398.2:c.170G>A	p.Gly57Glu	p.G57E	ENST00000285398	NM_000122.1	57	gGa/gAa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640169	3640169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	553	668	0	ENST00000294008.3:c.3470C>T	p.Ser1157Leu	p.S1157L	ENST00000294008	NM_032444.2	1157	tCg/tTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112000	115112000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	188	735	1	ENST00000257566.3:c.1740C>A	p.Phe580Leu	p.F580L	ENST00000257566	NM_016569.3	580	ttC/ttA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873483	151873483	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	119	417	0	ENST00000262189.6:c.9055C>T	p.Gln3019Ter	p.Q3019*	ENST00000262189	NM_170606.2	3019	Cag/Tag																																																																														
PIM1	5292	MSKCC	GRCh37	6	37139045	37139045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	170	618	0	ENST00000373509.5:c.385C>T	p.Leu129Phe	p.L129F	ENST00000373509	NM_002648.3	129	Ctc/Ttc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123202456	123202456	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	83	205	0	ENST00000218089.9:c.2308C>T	p.Gln770Ter	p.Q770*	ENST00000218089	NM_001042749.1	770	Cag/Tag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56111459	56111459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	99	311	0	ENST00000399503.3:c.59C>T	p.Thr20Met	p.T20M	ENST00000399503	NM_005921.1	20	aCg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	119	407	0				ENST00000310581	NM_198253.2																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120510849	120510849	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	56	300	0	ENST00000256646.2:c.1115T>G	p.Leu372Arg	p.L372R	ENST00000256646	NM_024408.3	372	cTg/cGg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131925489	131925489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	51	266	0	ENST00000265335.6:c.1412C>T	p.Ser471Leu	p.S471L	ENST00000265335		471	tCa/tTa																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023207	33023207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	145	571	0	ENST00000300177.4:c.316G>A	p.Glu106Lys	p.E106K	ENST00000300177	NM_001191322.1	106	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41542802	41542802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	202	346	0	ENST00000263253.7:c.2113C>T	p.Arg705Ter	p.R705*	ENST00000263253	NM_001429.3	705	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295295	1295295	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	179	622	0				ENST00000310581	NM_198253.2																																																																																
HOXB13	10481	MSKCC	GRCh37	17	46805384	46805384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	213	686	1	ENST00000290295.7:c.572C>T	p.Pro191Leu	p.P191L	ENST00000290295	NM_006361.5	191	cCa/cTa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935343	36935343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	185	673	0	ENST00000361632.4:c.1384G>A	p.Glu462Lys	p.E462K	ENST00000361632		462	Gag/Aag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120478185	120478185	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185917176		P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	106	326	0	ENST00000256646.2:c.3565G>A	p.Asp1189Asn	p.D1189N	ENST00000256646	NM_024408.3	1189	Gat/Aat																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226253412	226253412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	73	86	0	ENST00000366813.1:c.184C>G	p.Leu62Val	p.L62V	ENST00000366813		62	Ctg/Gtg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850642	63850642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	53	238	0	ENST00000279873.7:c.1420G>A	p.Glu474Lys	p.E474K	ENST00000279873	NM_032199.2	474	Gaa/Aaa																																																																														
HRAS	3265	MSKCC	GRCh37	11	532722	532722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	172	800	0	ENST00000311189.7:c.484G>A	p.Glu162Lys	p.E162K	ENST00000311189		162	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	48955392	48955392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	24	186	0	ENST00000267163.4:c.1508C>T	p.Ser503Phe	p.S503F	ENST00000267163	NM_000321.2	503	tCt/tTt																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023102	33023102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	96	463	0	ENST00000300177.4:c.211G>A	p.Glu71Lys	p.E71K	ENST00000300177	NM_001191322.1	71	Gag/Aag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714105	43714105	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	184	667	0	ENST00000382044.4:c.4048G>C	p.Glu1350Gln	p.E1350Q	ENST00000382044	NM_001141980.1	1350	Gaa/Caa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43738627	43738627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	110	455	0	ENST00000382044.4:c.2998G>A	p.Glu1000Lys	p.E1000K	ENST00000382044	NM_001141980.1	1000	Gag/Aag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748225	43748225	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	157	519	0	ENST00000382044.4:c.2581C>T	p.Gln861Ter	p.Q861*	ENST00000382044	NM_001141980.1	861	Cag/Tag																																																																														
BLM	641	MSKCC	GRCh37	15	91293231	91293231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	56	335	0	ENST00000355112.3:c.733G>A	p.Glu245Lys	p.E245K	ENST00000355112	NM_000057.2	245	Gaa/Aaa																																																																														
BLM	641	MSKCC	GRCh37	15	91334044	91334044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	88	354	0	ENST00000355112.3:c.2989G>A	p.Asp997Asn	p.D997N	ENST00000355112	NM_000057.2	997	Gat/Aat																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632800	23632800	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	262	343	0	ENST00000261584.4:c.2997-1G>C		p.X999_splice	ENST00000261584	NM_024675.3	999																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832535	72832535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	114	400	1	ENST00000268489.5:c.4046C>T	p.Ala1349Val	p.A1349V	ENST00000268489	NM_006885.3	1349	gCt/gTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29657368	29657368	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	86	431	0	ENST00000358273.4:c.5664C>G	p.Ile1888Met	p.I1888M	ENST00000358273	NM_001042492.2	1888	atC/atG																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428366	33428366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	156	505	2	ENST00000335858.7:c.421C>T	p.Arg141Ter	p.R141*	ENST00000335858	NM_133629.2	141	Cga/Tga																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40456629	40456629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	168	633	0	ENST00000345506.4:c.1339C>T	p.Gln447Ter	p.Q447*	ENST00000345506	NM_003152.3	447	Cag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223246	41223246	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	86	383	0	ENST00000357654.3:c.4685C>G	p.Pro1562Arg	p.P1562R	ENST00000357654	NM_007294.3	1562	cCt/cGt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39620703	39620703	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	63	247	0	ENST00000262039.4:c.2101C>T	p.Gln701Ter	p.Q701*	ENST00000262039	NM_002647.2	701	Cag/Tag																																																																														
MALT1	10892	MSKCC	GRCh37	18	56363645	56363645	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	101	371	0	ENST00000348428.3:c.424C>T	p.Gln142Ter	p.Q142*	ENST00000348428	NM_006785.3	142	Cag/Tag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223451	2223451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	112	409	0	ENST00000398665.3:c.3562G>A	p.Glu1188Lys	p.E1188K	ENST00000398665	NM_032482.2	1188	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11168964	11168964	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	156	575	0	ENST00000344626.4:c.4458C>G	p.Ile1486Met	p.I1486M	ENST00000344626	NM_003072.3	1486	atC/atG																																																																														
JAK3	3718	MSKCC	GRCh37	19	17949140	17949140	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	171	706	0	ENST00000458235.1:c.1501C>T	p.Gln501Ter	p.Q501*	ENST00000458235	NM_000215.3	501	Cag/Tag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968319	18968319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	203	656	1	ENST00000262803.5:c.2159C>T	p.Ser720Phe	p.S720F	ENST00000262803	NM_002911.3	720	tCc/tTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905157	50905157	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	238	767	0	ENST00000440232.2:c.439T>G	p.Tyr147Asp	p.Y147D	ENST00000440232	NM_002691.3	147	Tac/Gac																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605856	46605856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	144	532	2	ENST00000263734.3:c.1504G>A	p.Glu502Lys	p.E502K	ENST00000263734	NM_001430.4	502	Gag/Aag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172190	99172190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	166	573	0	ENST00000074304.5:c.1756G>A	p.Glu586Lys	p.E586K	ENST00000074304	NM_001134224.1	586	Gaa/Aaa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190717411	190717411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	54	287	0	ENST00000441310.2:c.730G>A	p.Asp244Asn	p.D244N	ENST00000441310	NM_000534.4	244	Gat/Aat																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31388678	31388678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	138	580	1	ENST00000328111.2:c.1943G>A	p.Gly648Glu	p.G648E	ENST00000328111	NM_006892.3	648	gGa/gAa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268726	46268726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139276261		P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	140	533	1	ENST00000371998.3:c.3011C>T	p.Ser1004Phe	p.S1004F	ENST00000371998		1004	tCt/tTt																																																																														
EP300	2033	MSKCC	GRCh37	22	41522021	41522021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	209	385	0	ENST00000263253.7:c.883C>T	p.Pro295Ser	p.P295S	ENST00000263253	NM_001429.3	295	Cct/Tct																																																																														
EP300	2033	MSKCC	GRCh37	22	41523570	41523570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	266	510	0	ENST00000263253.7:c.986C>T	p.Thr329Ile	p.T329I	ENST00000263253	NM_001429.3	329	aCa/aTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41564741	41564741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	48	504	0	ENST00000263253.7:c.4042G>A	p.Glu1348Lys	p.E1348K	ENST00000263253	NM_001429.3	1348	Gag/Aag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960129	134960129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	118	507	0	ENST00000398015.3:c.2486C>G	p.Ser829Cys	p.S829C	ENST00000398015	NM_004441.4	829	tCc/tGc																																																																														
KDR	3791	MSKCC	GRCh37	4	55981458	55981458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	63	291	0	ENST00000263923.4:c.479C>T	p.Ser160Leu	p.S160L	ENST00000263923	NM_002253.2	160	tCa/tTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268224	153268224	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	50	146	0	ENST00000281708.4:c.585-1G>C		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56111467	56111467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	90	289	0	ENST00000399503.3:c.67G>A	p.Glu23Lys	p.E23K	ENST00000399503	NM_005921.1	23	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112173723	112173723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	61	292	0	ENST00000257430.4:c.2432C>T	p.Ser811Leu	p.S811L	ENST00000257430	NM_000038.5	811	tCa/tTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696631	176696631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	64	218	1	ENST00000439151.2:c.5332C>T	p.Arg1778Ter	p.R1778*	ENST00000439151	NM_022455.4	1778	Cga/Tga																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43745253	43745253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	140	565	0	ENST00000523873.1:c.166G>A	p.Glu56Lys	p.E56K	ENST00000523873		56	Gag/Aag																																																																														
RHEB	6009	MSKCC	GRCh37	7	151164264	151164264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	112	335	0	ENST00000262187.5:c.496G>A	p.Glu166Lys	p.E166K	ENST00000262187	NM_005614.3	166	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864636	68864636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	64	252	0	ENST00000288368.4:c.7G>A	p.Glu3Lys	p.E3K	ENST00000288368	NM_024870.2	3	Gag/Aag																																																																														
FANCC	2176	MSKCC	GRCh37	9	97887436	97887436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	130	445	0	ENST00000289081.3:c.928G>A	p.Glu310Lys	p.E310K	ENST00000289081	NM_000136.2	310	Gaa/Aaa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797340	135797340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	72	228	0	ENST00000298552.3:c.529C>T	p.Leu177Phe	p.L177F	ENST00000298552	NM_001162426.1	177	Ctc/Ttc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139411748	139411748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	222	823	1	ENST00000277541.6:c.1531G>A	p.Glu511Lys	p.E511K	ENST00000277541	NM_017617.3	511	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942735	44942761	+	inframe_deletion	In_Frame_Del	DEL	ACTTCCTGCTTTTGTGCGTGTCGTATC	ACTTCCTGCTTTTGTGCGTGTCGTATC	-			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	82	204	0	ENST00000377967.4:c.3316_3342del	p.Leu1106_Ser1114del	p.L1106_S1114del	ENST00000377967	NM_021140.2	1105	aaACTTCCTGCTTTTGTGCGTGTCGTATCa/aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70339290	70339290	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	111	246	0	ENST00000374080.3:c.167A>C	p.His56Pro	p.H56P	ENST00000374080		56	cAt/cCt																																																																														
MED12	9968	MSKCC	GRCh37	X	70341219	70341219	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	127	218	0	ENST00000374080.3:c.778G>C	p.Glu260Gln	p.E260Q	ENST00000374080		260	Gag/Cag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060601	38060626	+	frameshift_variant	Frame_Shift_Del	DEL	ACACCTTGGTAGTACGCCGGCTCCAG	ACACCTTGGTAGTACGCCGGCTCCAG	-			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	202	788	0	ENST00000250448.2:c.1363_1388del	p.Leu455ValfsTer94	p.L455Vfs*94	ENST00000250448	NM_004496.3	455	CTGGAGCCGGCGTACTACCAAGGTGTg/g																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953150	17953159	+	protein_altering_variant	In_Frame_Del	DEL	ATGCCGCCGT	ATGCCGCCGT	G			P-0048793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	150	751	0	ENST00000458235.1:c.827_836delinsC	p.Asp276_Ile279delinsAla	p.D276_I279delinsA	ENST00000458235	NM_000215.3	276	gACGGCGGCATc/gCc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	48	329	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	155	736	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048602	180048602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	58	759	0	ENST00000261937.6:c.1960G>A	p.Glu654Lys	p.E654K	ENST00000261937	NM_182925.4	654	Gaa/Aaa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115275415	115275415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	28	501	0	ENST00000438362.2:c.998T>A	p.Ile333Asn	p.I333N	ENST00000438362	NM_001242891.1	333	aTc/aAc																																																																														
NF2	4771	MSKCC	GRCh37	22	30032856	30032856	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	38	385	1	ENST00000338641.4:c.232del	p.Asp78ThrfsTer45	p.D78Tfs*45	ENST00000338641	NM_000268.3	77	atG/at																																																																														
APC	324	MSKCC	GRCh37	5	112174508	112174508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	22	455	0	ENST00000257430.4:c.3217A>G	p.Thr1073Ala	p.T1073A	ENST00000257430	NM_000038.5	1073	Aca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	262	511	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	240	619	2	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	205	418	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	288	495	4	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	319	632	2	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	70	430	4	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	313	625	1	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81934239	81934239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	351	662	1	ENST00000359376.3:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000359376	NM_002661.3	406	Gag/Aag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909463	50909463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	413	852	0	ENST00000440232.2:c.1267C>T	p.Arg423Cys	p.R423C	ENST00000440232	NM_002691.3	423	Cgt/Tgt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	271	528	3	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371799	55371820	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCGCGCTGGGCCCCGAG	GGCGGCCGCGCTGGGCCCCGAG	-			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	239	178	0	ENST00000297316.4:c.499_520del	p.Leu167TrpfsTer213	p.L167Wfs*213	ENST00000297316	NM_022454.3	163	caGGCGGCCGCGCTGGGCCCCGAG/ca																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	200	444	0	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	309	534	1	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	436	787	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110129	8110130	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs745673717		P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	365	620	0	ENST00000585124.1:c.475dup	p.Arg159ProfsTer15	p.R159Pfs*15	ENST00000585124	NM_004217.3	159	cgc/cCgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351595	89351595	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	436	822	0	ENST00000301030.4:c.1355del	p.Asn452IlefsTer3	p.N452Ifs*3	ENST00000301030	NM_001256183.1	452	aAt/at																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589631	67589632	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATTATATGAAGA			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	146	294	0	ENST00000274335.5:c.1397_1408dupTATATGAAGAAT	p.Leu466_Glu469dup	p.L466_E469dup	ENST00000274335		466	aga/agATTATATGAAGAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644874	67644874	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	183	727	0	ENST00000264010.4:c.143del	p.Gly48ValfsTer14	p.G48Vfs*14	ENST00000264010	NM_006565.3	47	Ggg/gg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	592	551	23	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																														
KDR	3791	MSKCC	GRCh37	4	55964923	55964923	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1062832		P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	78	512	0	ENST00000263923.4:c.2314G>A	p.Ala772Thr	p.A772T	ENST00000263923	NM_002253.2	772	Gcg/Acg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351959	89351959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	564	937	0	ENST00000301030.4:c.991G>A	p.Ala331Thr	p.A331T	ENST00000301030	NM_001256183.1	331	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089539	27089540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	465	785	0	ENST00000324856.7:c.2497_2498dup	p.Asn833LysfsTer27	p.N833Kfs*27	ENST00000324856	NM_006015.4	832	ata/atAAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306998	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	240	492	0	ENST00000342505.4:c.2579_2580del	p.Lys860ThrfsTer4	p.K860Tfs*4	ENST00000342505	NM_002227.2	860	aAA/a																																																																														
TET1	80312	MSKCC	GRCh37	10	70412334	70412334	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	32	351	0	ENST00000373644.4:c.4444T>C	p.Cys1482Arg	p.C1482R	ENST00000373644	NM_030625.2	1482	Tgt/Cgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720664	89720664	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	132	142	0	ENST00000371953.3:c.815A>C	p.His272Pro	p.H272P	ENST00000371953	NM_000314.4	272	cAc/cCc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727490	66727490	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	323	593	0	ENST00000307102.5:c.206A>G	p.Glu69Gly	p.E69G	ENST00000307102	NM_002755.3	69	gAg/gGg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785756	50785756	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	354	535	0	ENST00000398568.2:c.746T>C	p.Val249Ala	p.V249A	ENST00000398568	NM_001042412.1	249	gTt/gCt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660581	67660581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	476	711	2	ENST00000264010.4:c.1481G>A	p.Arg494His	p.R494H	ENST00000264010	NM_006565.3	494	cGc/cAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350981	89350981	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	549	1014	0	ENST00000301030.4:c.1969T>C	p.Phe657Leu	p.F657L	ENST00000301030	NM_001256183.1	657	Ttt/Ctt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244202	41244204	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	90	656	0	ENST00000357654.3:c.3344_3346del	p.Glu1115del	p.E1115del	ENST00000357654	NM_007294.3	1115	gAAGta/gta																																																																														
TCF3	6929	MSKCC	GRCh37	19	1632390	1632390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	402	758	0	ENST00000344749.5:c.160C>T	p.Pro54Ser	p.P54S	ENST00000344749	NM_001136139.2	54	Ccc/Tcc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470911	25470911	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	396	765	0	ENST00000264709.3:c.850T>C	p.Tyr284His	p.Y284H	ENST00000264709	NM_175629.2	284	Tac/Cac																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044393	128044393	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	427	752	1	ENST00000285398.2:c.1228T>C	p.Tyr410His	p.Y410H	ENST00000285398	NM_000122.1	410	Tac/Cac																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024833	31024833	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	388	719	0	ENST00000375687.4:c.4321del	p.Tyr1441MetfsTer9	p.Y1441Mfs*9	ENST00000375687	NM_015338.5	1440	Ttt/tt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934319	49934319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	295	624	0	ENST00000296474.3:c.2188A>G	p.Ser730Gly	p.S730G	ENST00000296474	NM_002447.2	730	Agt/Ggt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936341	49936341	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	390	751	0	ENST00000296474.3:c.1507A>C	p.Ser503Arg	p.S503R	ENST00000296474	NM_002447.2	503	Agt/Cgt																																																																														
BCL6	604	MSKCC	GRCh37	3	187443285	187443285	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	126	312	0	ENST00000232014.4:c.1839+2T>C		p.X613_splice	ENST00000232014	NM_001130845.1	613																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50467834	50467834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	309	632	0	ENST00000331340.3:c.1069G>T	p.Gly357Cys	p.G357C	ENST00000331340	NM_006060.4	357	Ggc/Tgc																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29195954	29195954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	507	809	0	ENST00000240100.2:c.644A>G	p.Asp215Gly	p.D215G	ENST00000240100	NM_001394.6	215	gAc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	41	480	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	52	428	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0048920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	24	345	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821620	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCCGCCGCCGCCGCCGCCACC	GCCGCCGCCGCCGCCGCCGCCGCCACC	-			P-0048920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	19	69	1	ENST00000268489.5:c.10555_10581del	p.Gly3519_Gly3527del	p.G3519_G3527del	ENST00000268489	NM_006885.3	3519	GGTGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151849921	151849921	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GAG			P-0048920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	38	445	0	ENST00000262189.6:c.12395delinsCTC	p.Ile4132ThrfsTer27	p.I4132Tfs*27	ENST00000262189	NM_170606.2	4132	aTc/aCTCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	417	471	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045016	47045016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	102	669	0	ENST00000329236.7:c.2108C>T	p.Ser703Leu	p.S703L	ENST00000329236	NM_001204466.1	703	tCa/tTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024024	27024024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	33	125	0	ENST00000324856.7:c.1133delC	p.Pro378LeufsTer13	p.P378Lfs*13	ENST00000324856	NM_006015.4	377	aCc/ac																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775716	9775716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	131	646	1	ENST00000377346.4:c.259C>T	p.Arg87Trp	p.R87W	ENST00000377346	NM_005026.3	87	Cgg/Tgg																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99802271	99802271	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	21	170	1	ENST00000280892.6:c.622G>T	p.Gly208Ter	p.G208*	ENST00000280892	NM_001130678.1	208	Gga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876272	35876272	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	37	528	0	ENST00000303115.3:c.1064T>G	p.Val355Gly	p.V355G	ENST00000303115	NM_002185.3	355	gTc/gGc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38186901	38186901	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	36	504	0	ENST00000317025.8:c.1576A>G	p.Thr526Ala	p.T526A	ENST00000317025	NM_023034.1	526	Aca/Gca																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908864	101908864	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	77	548	0	ENST00000374994.4:c.1228G>T	p.Glu410Ter	p.E410*	ENST00000374994	NM_004612.2	410	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	366	425	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	161	351	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
MST1	4485	MSKCC	GRCh37	3	49723126	49723128	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	53	452	0	ENST00000449682.2:c.1288_1290delGAG	p.Glu430del	p.E430del	ENST00000449682	NM_020998.3	430	GAG/-																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729775	41729775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	220	346	0	ENST00000242208.4:c.754G>A	p.Ala252Thr	p.A252T	ENST00000242208	NM_002192.2	252	Gcc/Acc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332577	153332577	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	152	335	0	ENST00000281708.4:c.379C>T	p.Gln127Ter	p.Q127*	ENST00000281708	NM_033632.3	127	Cag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604797	48604797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	219	335	0	ENST00000342988.3:c.1619T>C	p.Leu540Pro	p.L540P	ENST00000342988	NM_005359.5	540	cTt/cCt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893604	28893604	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	212	423	1	ENST00000282397.4:c.3242A>T	p.Asp1081Val	p.D1081V	ENST00000282397	NM_002019.4	1081	gAc/gTc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701870	43701870	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	164	317	0	ENST00000382044.4:c.5375T>G	p.Ile1792Ser	p.I1792S	ENST00000382044	NM_001141980.1	1792	aTc/aGc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78931510	78931510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	547	502	0	ENST00000306801.3:c.3457G>A	p.Asp1153Asn	p.D1153N	ENST00000306801	NM_020761.2	1153	Gac/Aac																																																																														
TP63	8626	MSKCC	GRCh37	3	189455546	189455546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	52	394	0	ENST00000264731.3:c.80C>A	p.Ala27Asp	p.A27D	ENST00000264731	NM_003722.4	27	gCt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTATTACAT			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	160	344	0	ENST00000257430.4:c.4464_4473dup	p.Ala1492IlefsTer25	p.A1492Ifs*25	ENST00000257430	NM_000038.5	1487	act/acTTTATTACATt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663629	117663629	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	163	493	0	ENST00000368508.3:c.4603del	p.Tyr1535IlefsTer68	p.Y1535Ifs*68	ENST00000368508	NM_002944.2	1535	Tat/at																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729104	66729109	+	inframe_deletion	In_Frame_Del	DEL	ACCCGC	ACCCGC	-			P-0048926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	267	615	0	ENST00000307102.5:c.313_318del	p.Pro105_Ala106del	p.P105_A106del	ENST00000307102	NM_002755.3	104	aaACCCGCa/aaa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314896	1314896	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0048926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	133	421	0				ENST00000381566																																																																																	
PTPRD	5789	MSKCC	GRCh37	9	8497265	8497265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	102	359	0	ENST00000356435.5:c.2326G>A	p.Glu776Lys	p.E776K	ENST00000356435		776	Gaa/Aaa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972418	81972418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	74	553	0	ENST00000359376.3:c.3211C>T	p.Arg1071Cys	p.R1071C	ENST00000359376	NM_002661.3	1071	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	111	393	0				ENST00000310581	NM_198253.2																																																																																
MEN1	4221	MSKCC	GRCh37	11	64575392	64575392	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	255	698	0	ENST00000337652.1:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000337652	NM_130803.2	214	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	111	459	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	105	461	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	120	359	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	97	368	0	ENST00000278616.4:c.6908dupA	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591140	67591145	+	inframe_deletion	In_Frame_Del	DEL	ACCAAT	ACCAAT	-			P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	69	280	0	ENST00000274335.5:c.1735_1740del	p.Gln579_Tyr580del	p.Q579_Y580del	ENST00000274335		578	gACCAATac/gac																																																																														
APC	324	MSKCC	GRCh37	5	112174349	112174349	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	57	254	0	ENST00000257430.4:c.3058G>T	p.Glu1020Ter	p.E1020*	ENST00000257430	NM_000038.5	1020	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589609	67589610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	79	274	0	ENST00000274335.5:c.1378dupA	p.Ser460LysfsTer5	p.S460Kfs*5	ENST00000274335		458	gaa/gAaa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696449	47696449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	49	387	0	ENST00000347630.2:c.374T>G	p.Phe125Cys	p.F125C	ENST00000347630	NM_001007230.1	125	tTt/tGt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026101	71026116	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCGCGTTGCGTCGG	GGCCGCGTTGCGTCGG	-			P-0048935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	13	345	0	ENST00000318789.4:c.1506_1521del	p.Phe502LeufsTer20	p.F502Lfs*20	ENST00000318789	NM_032682.5	502	ttCCGACGCAACGCGGCC/tt																																																																														
APC	324	MSKCC	GRCh37	5	112177235	112177238	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0048935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	27	316	0	ENST00000257430.4:c.5947_5950del	p.Glu1983MetfsTer60	p.E1983Mfs*60	ENST00000257430	NM_000038.5	1982	AAAGaa/aa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619122	1619122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	46	490	0	ENST00000344749.5:c.1438G>A	p.Asp480Asn	p.D480N	ENST00000344749	NM_001136139.2	480	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	981	639	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425694	49425694	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	474	821	0	ENST00000301067.7:c.12794del	p.Gly4265AlafsTer13	p.G4265Afs*13	ENST00000301067	NM_003482.3	4265	gGc/gc																																																																														
RB1	5925	MSKCC	GRCh37	13	48881543	48881543	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0048937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	177	249	0	ENST00000267163.4:c.264+1G>T		p.X88_splice	ENST00000267163	NM_000321.2	88																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472666	88472666	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	209	429	0	ENST00000360948.2:c.1890-1G>A		p.X630_splice	ENST00000360948	NM_001012338.2	630																																																																															
RASA1	5921	MSKCC	GRCh37	5	86628322	86628322	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0048937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	192	229	0	ENST00000274376.6:c.693-2A>G		p.X231_splice	ENST00000274376	NM_002890.2	231																																																																															
PNRC1	10957	MSKCC	GRCh37	6	89791121	89791121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	172	215	0	ENST00000336032.3:c.508G>T	p.Ala170Ser	p.A170S	ENST00000336032	NM_006813.2	170	Gcg/Tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	438	756	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047254	77047254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	253	456	0	ENST00000356341.3:c.1290G>T	p.Trp430Cys	p.W430C	ENST00000356341	NM_002576.4	430	tgG/tgT																																																																														
RB1	5925	MSKCC	GRCh37	13	48916798	48916799	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0048938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	277	353	0	ENST00000267163.4:c.328_329del	p.Leu110ArgfsTer2	p.L110Rfs*2	ENST00000267163	NM_000321.2	110	CTa/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	200	610	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662023	227662023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	149	568	0	ENST00000305123.5:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000305123	NM_005544.2	478	Gcc/Acc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137060	64137060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	161	598	2	ENST00000334205.4:c.1571C>T	p.Ala524Val	p.A524V	ENST00000334205	NM_003942.2	524	gCg/gTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488683	212488683	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	126	400	0	ENST00000342788.4:c.2166A>C	p.Lys722Asn	p.K722N	ENST00000342788	NM_005235.2	722	aaA/aaC																																																																														
APC	324	MSKCC	GRCh37	5	112174372	112174372	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0048949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	157	281	0	ENST00000257430.4:c.3081T>G	p.Tyr1027Ter	p.Y1027*	ENST00000257430	NM_000038.5	1027	taT/taG																																																																														
CDH1	999	MSKCC	GRCh37	16	68842603	68842603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	188	515	0	ENST00000261769.5:c.539C>A	p.Ser180Tyr	p.S180Y	ENST00000261769	NM_004360.3	180	tCc/tAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228046	36228046	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	263	727	1	ENST00000222270.7:c.7432C>T	p.Gln2478Ter	p.Q2478*	ENST00000222270	NM_014727.1	2478	Cag/Tag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0048952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	216	333	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0048952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	17	311	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0048952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	18	256	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578491	7578491	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	431	784	2	ENST00000269305.4:c.439delG	p.Val147LeufsTer23	p.V147Lfs*23	ENST00000269305	NM_001126112.2	147	Gtt/tt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713331	30713331	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	43	490	0	ENST00000359013.4:c.731T>C	p.Ile244Thr	p.I244T	ENST00000359013	NM_001024847.2	244	aTc/aCc																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0048953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	114	449	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212015	36212015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	289	754	1	ENST00000222270.7:c.1766C>T	p.Pro589Leu	p.P589L	ENST00000222270	NM_014727.1	589	cCt/cTt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617734	39617734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	75	345	0	ENST00000262039.4:c.1918G>T	p.Asp640Tyr	p.D640Y	ENST00000262039	NM_002647.2	640	Gat/Tat																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617764	39617764	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	63	327	0	ENST00000262039.4:c.1948A>C	p.Ile650Leu	p.I650L	ENST00000262039	NM_002647.2	650	Atc/Ctc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163779	47163779	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	69	446	0	ENST00000409792.3:c.2347del	p.Val783PhefsTer15	p.V783Ffs*15	ENST00000409792	NM_014159.6	783	Gtt/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	201	596	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796979	42796979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145102151		P-0048954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	292	986	1	ENST00000575354.2:c.3437C>T	p.Pro1146Leu	p.P1146L	ENST00000575354	NM_015125.3	1146	cCa/cTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100980	41100980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	87	656	1	ENST00000373198.4:c.1376G>T	p.Arg459Leu	p.R459L	ENST00000373198	NM_133170.3	459	cGg/cTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41564500	41564500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	62	462	0	ENST00000263253.7:c.3922G>T	p.Asp1308Tyr	p.D1308Y	ENST00000263253	NM_001429.3	1308	Gac/Tac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827928	72827928	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	94	678	0	ENST00000268489.5:c.8653G>T	p.Glu2885Ter	p.E2885*	ENST00000268489	NM_006885.3	2885	Gag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733348	40733348	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	127	494	0	ENST00000373198.4:c.3458T>G	p.Val1153Gly	p.V1153G	ENST00000373198	NM_133170.3	1153	gTg/gGg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431045	181431045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	114	707	1	ENST00000325404.1:c.897G>T	p.Gln299His	p.Q299H	ENST00000325404	NM_003106.3	299	caG/caT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	48	243	1	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	247	683	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873066	134873066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762457030		P-0048955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	129	569	0	ENST00000398015.3:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000398015	NM_004441.4	457	cCg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089569	27089569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	174	709	0	ENST00000324856.7:c.2525A>G	p.His842Arg	p.H842R	ENST00000324856	NM_006015.4	842	cAt/cGt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0048956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	239	453	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
KDR	3791	MSKCC	GRCh37	4	55973911	55973911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	208	371	1	ENST00000263923.4:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000263923	NM_002253.2	469	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023141	27023143	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0048956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	12	70	0	ENST00000324856.7:c.258_260del	p.Gly87del	p.G87del	ENST00000324856	NM_006015.4	83	GGC/-																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016635	12016636	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0048956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	27	291	0	ENST00000353533.5:c.772_773del	p.Ile258CysfsTer9	p.I258Cfs*9	ENST00000353533	NM_003010.3	257	tcTAtt/tctt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420011	41420011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	278	497	0	ENST00000373198.4:c.310G>A	p.Asp104Asn	p.D104N	ENST00000373198	NM_133170.3	104	Gac/Aac																																																																														
CD79A	973	MSKCC	GRCh37	19	42383249	42383249	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137953079		P-0048956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	272	530	1	ENST00000221972.3:c.269C>T	p.Thr90Met	p.T90M	ENST00000221972	NM_021601.3	90	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578225	7578225	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	348	516	0	ENST00000269305.4:c.624del	p.Asp208GlufsTer39	p.D208Efs*39	ENST00000269305	NM_001126112.2	208	gaC/ga																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135307	30135307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	183	353	0	ENST00000331968.5:c.511G>A	p.Val171Ile	p.V171I	ENST00000331968	NM_002742.2	171	Gta/Ata																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217871	7217892	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTCCTTCATCTTCTGTTCCA	TCTTCCTTCATCTTCTGTTCCA	-			P-0048956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	243	417	1	ENST00000380728.2:c.119_140del	p.Met40AsnfsTer16	p.M40Nfs*16	ENST00000380728		40	aTGGAACAGAAGATGAAGGAAGAa/aa																																																																														
RARA	5914	MSKCC	GRCh37	17	38511592	38511592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	88	612	0	ENST00000254066.5:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000254066	NM_000964.3	364	Cgg/Tgg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813315	102813315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	247	588	1	ENST00000307046.8:c.374G>A	p.Arg125His	p.R125H	ENST00000307046	NM_001111285.1	125	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	313	644	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579462	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGGCCACG	AGGGGCCACG	-			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	205	722	0	ENST00000269305.4:c.216_225del	p.Val73HisfsTer47	p.V73Hfs*47	ENST00000269305	NM_001126112.2	72	ccCGTGGCCCCT/cc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118871	70118871	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	147	547	0	ENST00000245479.2:c.443A>G	p.Glu148Gly	p.E148G	ENST00000245479	NM_000346.3	148	gAg/gGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	125	394	0	ENST00000263967.3:c.1637A>T	p.Gln546Leu	p.Q546L	ENST00000263967	NM_006218.2	546	cAg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112163701	112163701	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	56	280	0	ENST00000257430.4:c.1624C>T	p.Gln542Ter	p.Q542*	ENST00000257430	NM_000038.5	542	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175136	112175136	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	46	229	0	ENST00000257430.4:c.3845C>G	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	66	300	0	ENST00000257430.4:c.4479_4480del	p.Glu1494LysfsTer19	p.E1494Kfs*19	ENST00000257430	NM_000038.5	1493	acGGaa/acaa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459776	149459776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	326	768	0	ENST00000286301.3:c.431G>A	p.Arg144His	p.R144H	ENST00000286301	NM_005211.3	144	cGt/cAt																																																																														
TP63	8626	MSKCC	GRCh37	3	189526197	189526197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	18	619	0	ENST00000264731.3:c.461C>G	p.Ser154Cys	p.S154C	ENST00000264731	NM_003722.4	154	tCc/tGc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	59	492	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049724	16049724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	34	428	0	ENST00000268712.3:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000268712	NM_006311.3	350	Cga/Tga																																																																														
TET1	80312	MSKCC	GRCh37	10	70406444	70406444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149434944		P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	86	625	1	ENST00000373644.4:c.3958C>T	p.Arg1320Trp	p.R1320W	ENST00000373644	NM_030625.2	1320	Cgg/Tgg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464412	120464412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	68	489	0	ENST00000256646.2:c.5234C>T	p.Ser1745Leu	p.S1745L	ENST00000256646	NM_024408.3	1745	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7573991	7573992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	211	684	0	ENST00000269305.4:c.1035dupT	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	345	-/T																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271765	18271765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	100	706	0	ENST00000222254.8:c.452C>A	p.Pro151His	p.P151H	ENST00000222254	NM_005027.3	151	cCc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175869	112175870	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	37	273	0	ENST00000257430.4:c.4578_4579delinsCT	p.Pro1527Ser	p.P1527S	ENST00000257430	NM_000038.5	1526	ccTCca/ccCTca																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94128966	94128966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	66	408	0	ENST00000369303.4:c.94G>C	p.Glu32Gln	p.E32Q	ENST00000369303	NM_004440.3	32	Gaa/Caa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141583032	141583032	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	143	473	0	ENST00000220592.5:c.216-1G>T		p.X72_splice	ENST00000220592	NM_012154.3	72																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0048982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	70	450	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	265	819	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891308	101891308	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	114	587	0	ENST00000374994.4:c.269C>A	p.Ser90Ter	p.S90*	ENST00000374994	NM_004612.2	90	tCa/tAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112448	115112448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	162	728	1	ENST00000257566.3:c.1292C>T	p.Ala431Val	p.A431V	ENST00000257566	NM_016569.3	431	gCg/gTg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429400	78429400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	122	476	0	ENST00000370768.2:c.1042G>A	p.Ala348Thr	p.A348T	ENST00000370768	NM_003902.3	348	Gct/Act																																																																														
KIT	3815	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	652	432	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188183	11188183	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	268	464	0	ENST00000361445.4:c.5911G>A	p.Ala1971Thr	p.A1971T	ENST00000361445	NM_004958.3	1971	Gcc/Acc																																																																														
CASP8	841	MSKCC	GRCh37	2	202137387	202137387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	89	368	0	ENST00000358485.4:c.615G>A	p.Met205Ile	p.M205I	ENST00000358485	NM_001080125.1	205	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	139	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125514420	125514420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	80	352	0	ENST00000428830.2:c.1115G>T	p.Arg372Leu	p.R372L	ENST00000428830	NM_001114121.2	372	cGg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	200	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	46	333	2	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	380	797	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	112	410	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	168	572	1	ENST00000397062.3:c.246A>T	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaT																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	53	845	6	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952142	178952142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	56	239	0	ENST00000263967.3:c.3197C>T	p.Ala1066Val	p.A1066V	ENST00000263967	NM_006218.2	1066	gCa/gTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	106	259	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	104	421	2	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	200	707	1	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962930	2962930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	212	814	1	ENST00000396946.4:c.1978C>T	p.Arg660Trp	p.R660W	ENST00000396946	NM_032415.4	660	Cgg/Tgg																																																																														
AR	367	MSKCC	GRCh37	X	66765164	66765164	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	23	346	1	ENST00000374690.3:c.176A>T	p.Gln59Leu	p.Q59L	ENST00000374690	NM_000044.3	59	cAg/cTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674222	117674222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	116	559	0	ENST00000368508.3:c.4252G>A	p.Val1418Ile	p.V1418I	ENST00000368508	NM_002944.2	1418	Gtt/Att																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910712	29910712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	266	1036	2	ENST00000376809.5:c.252G>T	p.Trp84Cys	p.W84C	ENST00000376809	NM_002116.7	84	tgG/tgT																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	160	520	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717712	89717712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	27	379	0	ENST00000371953.3:c.737C>T	p.Pro246Leu	p.P246L	ENST00000371953	NM_000314.4	246	cCg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211138	36211138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	274	792	0	ENST00000222270.7:c.889C>T	p.Arg297Ter	p.R297*	ENST00000222270	NM_014727.1	297	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790170	40790170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	98	518	0	ENST00000373198.4:c.2561G>A	p.Arg854His	p.R854H	ENST00000373198	NM_133170.3	854	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023744	27023744	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	114	469	0	ENST00000324856.7:c.854del	p.Gly285GlufsTer78	p.G285Efs*78	ENST00000324856	NM_006015.4	284	Ggg/gg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5229638	5229638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	33	108	1	ENST00000357368.4:c.2213G>A	p.Arg738His	p.R738H	ENST00000357368	NM_002850.3	738	cGc/cAc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11027422	11027422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	90	787	0	ENST00000327064.4:c.989C>T	p.Ala330Val	p.A330V	ENST00000327064	NM_199141.1	330	gCg/gTg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665047	138665047	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	20	230	0	ENST00000330315.3:c.518C>G	p.Ala173Gly	p.A173G	ENST00000330315	NM_023067.3	173	gCa/gGa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399195	139399195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	181	760	0	ENST00000277541.6:c.4948G>A	p.Ala1650Thr	p.A1650T	ENST00000277541	NM_017617.3	1650	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0048987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	184	375	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0048987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	167	431	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	236	771	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438249	56438250	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0048987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	254	691	1	ENST00000407977.2:c.743dup	p.Tyr248Ter	p.Y248*	ENST00000407977		248	tac/taAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42042344	42042344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	51	495	0	ENST00000219905.7:c.6539G>A	p.Gly2180Asp	p.G2180D	ENST00000219905	NM_001164273.1	2180	gGc/gAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0048993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	133	416	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0048993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	85	715	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TSC1	7248	MSKCC	GRCh37	9	135796805	135796805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	32	333	0	ENST00000298552.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000298552	NM_001162426.1	228	Cga/Tga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819663	81819663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	48	580	0	ENST00000359376.3:c.69G>C	p.Glu23Asp	p.E23D	ENST00000359376	NM_002661.3	23	gaG/gaC																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56770021	56770021	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	63	613	0	ENST00000337432.4:c.17T>C	p.Phe6Ser	p.F6S	ENST00000337432	NM_058216.2	6	tTc/tCc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589226	67589237	+	inframe_deletion	In_Frame_Del	DEL	TAAACCACTACC	TAAACCACTACC	-			P-0048993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	47	367	0	ENST00000274335.5:c.1214_1225del	p.Ile405_Tyr408del	p.I405_Y408del	ENST00000274335		405	aTAAACCACTACCgg/agg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652383	48652383	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	58	971	0	ENST00000376670.3:c.1054G>C	p.Gly352Arg	p.G352R	ENST00000376670	NM_002049.3	352	Ggc/Cgc																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154350	2154350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	78	739	2	ENST00000434045.2:c.578G>A	p.Arg193His	p.R193H	ENST00000434045	NM_001127598.1	193	cGc/cAc																																																																														
INHA	3623	MSKCC	GRCh37	2	220437158	220437158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs75409408		P-0048994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	101	776	0	ENST00000243786.2:c.62G>A	p.Gly21Glu	p.G21E	ENST00000243786	NM_002191.3	21	gGg/gAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432447	49432447	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	58	629	0	ENST00000301067.7:c.8692C>T	p.Gln2898Ter	p.Q2898*	ENST00000301067	NM_003482.3	2898	Cag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15942871	15942895	+	frameshift_variant	Frame_Shift_Del	DEL	GTCATCAAAGCTTCCCATGAGAGCC	GTCATCAAAGCTTCCCATGAGAGCC	-			P-0048998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	40	444	0	ENST00000268712.3:c.6807_6831del	p.Ala2270LysfsTer15	p.A2270Kfs*15	ENST00000268712	NM_006311.3	2269	aaGGCTCTCATGGGAAGCTTTGATGAC/aa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5229623	5229623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	10	118	0	ENST00000357368.4:c.2228C>T	p.Ser743Leu	p.S743L	ENST00000357368	NM_002850.3	743	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949629	151949629	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0048998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	15	307	0	ENST00000262189.6:c.1469+2T>G		p.X490_splice	ENST00000262189	NM_170606.2	490																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	42	462	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	54	683	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0048999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	65	668	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521472	8521472	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	50	531	0	ENST00000356435.5:c.766A>G	p.Thr256Ala	p.T256A	ENST00000356435		256	Acc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	174	860	5	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	93	378	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480459	89480459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	47	392	0	ENST00000336596.2:c.2296G>A	p.Gly766Arg	p.G766R	ENST00000336596	NM_005233.5	766	Gga/Aga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247369	153247369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	54	297	0	ENST00000281708.4:c.1433C>T	p.Ser478Phe	p.S478F	ENST00000281708	NM_033632.3	478	tCt/tTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245521	153245521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	28	414	0	ENST00000281708.4:c.1670G>T	p.Gly557Val	p.G557V	ENST00000281708	NM_033632.3	557	gGa/gTa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482342	56482342	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	85	613	0	ENST00000267101.3:c.890A>T	p.Asp297Val	p.D297V	ENST00000267101	NM_001982.3	297	gAt/gTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608032	28608033	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	76	488	0	ENST00000241453.7:c.1933dup	p.Met645AsnfsTer10	p.M645Nfs*10	ENST00000241453	NM_004119.2	645	atg/aAtg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38189088	38189088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	56	488	0	ENST00000317025.8:c.926A>G	p.His309Arg	p.H309R	ENST00000317025	NM_023034.1	309	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	390	586	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0049001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	111	316	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129249	152129249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	373	581	1	ENST00000206249.3:c.202G>A	p.Ala68Thr	p.A68T	ENST00000206249	NM_000125.3	68	Gcc/Acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831993	72831993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	318	570	0	ENST00000268489.5:c.4588G>C	p.Gly1530Arg	p.G1530R	ENST00000268489	NM_006885.3	1530	Ggt/Cgt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5265158	5265158	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	436	737	0	ENST00000357368.4:c.429G>C	p.Leu143Phe	p.L143F	ENST00000357368	NM_002850.3	143	ttG/ttC																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250157	39250157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	291	621	0	ENST00000402219.2:c.1412G>A	p.Cys471Tyr	p.C471Y	ENST00000402219	NM_005633.3	471	tGt/tAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484357	8484357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	50	412	0	ENST00000356435.5:c.3175A>G	p.Met1059Val	p.M1059V	ENST00000356435		1059	Atg/Gtg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0049007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	173	419	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	229	327	0				ENST00000310581	NM_198253.2																																																																																
MAP2K1	5604	MSKCC	GRCh37	15	66729162	66729162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	187	713	0	ENST00000307102.5:c.370C>T	p.Pro124Ser	p.P124S	ENST00000307102	NM_002755.3	124	Ccg/Tcg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164535	36164535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	145	533	1	ENST00000300305.3:c.1340C>T	p.Pro447Leu	p.P447L	ENST00000300305		447	cCg/cTg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18956828	18956828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	176	656	0	ENST00000262803.5:c.271G>A	p.Asp91Asn	p.D91N	ENST00000262803	NM_002911.3	91	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100933	41100933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	180	580	1	ENST00000373198.4:c.1423G>A	p.Glu475Lys	p.E475K	ENST00000373198	NM_133170.3	475	Gag/Aag																																																																														
AGO2	27161	MSKCC	GRCh37	8	141582948	141582948	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	91	680	0	ENST00000220592.5:c.299T>C	p.Leu100Pro	p.L100P	ENST00000220592	NM_012154.3	100	cTa/cCa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938350	76938350	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0049007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	177	627	0	ENST00000373344.5:c.2398A>T	p.Ser800Cys	p.S800C	ENST00000373344	NM_000489.3	800	Agc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0049008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	220	660	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287809	33287809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150463674		P-0049008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	188	892	0	ENST00000374542.5:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000374542	NM_001141970.1	482	Gaa/Aaa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981813	201981813	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0049008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	65	778	0	ENST00000359651.3:c.524A>T	p.Gln175Leu	p.Q175L	ENST00000359651		175	cAa/cTa																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66520216	66520216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0049008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	55	348	0	ENST00000358598.2:c.500A>C	p.Gln167Pro	p.Q167P	ENST00000358598	NM_212471.2	167	cAa/cCa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99189292	99189292	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	44	408	0	ENST00000074304.5:c.2548C>G	p.Arg850Gly	p.R850G	ENST00000074304	NM_001134224.1	850	Cgc/Ggc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149447818	149447818	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	115	597	0	ENST00000286301.3:c.1586T>C	p.Leu529Pro	p.L529P	ENST00000286301	NM_005211.3	529	cTg/cCg																																																																														
TEK	7010	MSKCC	GRCh37	9	27212809	27212809	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	77	719	0	ENST00000380036.4:c.2791A>G	p.Ser931Gly	p.S931G	ENST00000380036	NM_000459.3	931	Agc/Ggc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	16	309	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692981	89692982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	32	503	0	ENST00000371953.3:c.469dupG	p.Glu157GlyfsTer23	p.E157Gfs*23	ENST00000371953	NM_000314.4	155	-/G																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589577	67589606	+	inframe_deletion	In_Frame_Del	DEL	AAAAATTACATGAATATAACACTCAGTTTC	AAAAATTACATGAATATAACACTCAGTTTC	-			P-0049009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	14	250	0	ENST00000274335.5:c.1342_1371del	p.Lys448_Gln457del	p.K448_Q457del	ENST00000274335		447	aAAAAATTACATGAATATAACACTCAGTTTCaa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	171	618	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	43	242	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508614	106508614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	96	422	0	ENST00000359195.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000359195	NM_002649.2	203	aCg/aTg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724585	162724585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	111	488	0	ENST00000367921.3:c.357G>T	p.Lys119Asn	p.K119N	ENST00000367921	NM_006182.2	119	aaG/aaT																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563123	21563123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	434	636	2	ENST00000382592.4:c.796G>C	p.Gly266Arg	p.G266R	ENST00000382592	NM_014572.2	266	Ggc/Cgc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99460090	99460090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	27	333	0	ENST00000268035.6:c.2186C>A	p.Ser729Tyr	p.S729Y	ENST00000268035	NM_000875.3	729	tCc/tAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916247	9916247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	148	363	0	ENST00000330684.3:c.2042G>A	p.Arg681Gln	p.R681Q	ENST00000330684	NM_001134407.1	681	cGa/cAa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117641	70117641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	118	541	0	ENST00000245479.2:c.109T>C	p.Ser37Pro	p.S37P	ENST00000245479	NM_000346.3	37	Tcg/Ccg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597495	10597495	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0049010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	200	408	23	ENST00000171111.5:c.1709-1G>A		p.X570_splice	ENST00000171111	NM_203500.1	570																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	156	351	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0049122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	108	533	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																														
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0049122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	84	181	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	125	437	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79950736	79950736	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs2405877		P-0049122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	21	96	2	ENST00000265081.6:c.190C>G	p.Pro64Ala	p.P64A	ENST00000265081	NM_002439.4	64	Cca/Gca																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484151	50484151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	83	458	0	ENST00000394963.4:c.1001G>A	p.Arg334Gln	p.R334Q	ENST00000394963	NM_003076.4	334	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0049124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	18	263	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0049124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	90	678	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942835	44942835	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0049124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	37	229	0	ENST00000377967.4:c.3416del	p.Pro1139GlnfsTer19	p.P1139Qfs*19	ENST00000377967	NM_021140.2	1139	Cca/ca																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983019	201983019	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0049124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	53	751	1	ENST00000359651.3:c.868G>T	p.Glu290Ter	p.E290*	ENST00000359651		290	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0049127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	263	733	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117347	115117347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0049127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	135	328	0	ENST00000257566.3:c.827C>T	p.Thr276Ile	p.T276I	ENST00000257566	NM_016569.3	276	aCt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			65	52	452	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868903	117868903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			123	50	295	0	ENST00000297338.2:c.796G>A	p.Glu266Lys	p.E266K	ENST00000297338	NM_006265.2	266	Gag/Aag																																																																														
NF2	4771	MSKCC	GRCh37	22	30067863	30067863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			66	70	447	0	ENST00000338641.4:c.1048G>A	p.Glu350Lys	p.E350K	ENST00000338641	NM_000268.3	350	Gaa/Aaa																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733044	74733044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			173	76	547	0	ENST00000359995.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000359995	NM_001195427.1	67	Gac/Aac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151892994	151892994	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			131	75	219	0	ENST00000262189.6:c.4376C>G	p.Ser1459Ter	p.S1459*	ENST00000262189	NM_170606.2	1459	tCa/tGa																																																																														
CDH1	999	MSKCC	GRCh37	16	68849484	68849484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			43	84	509	0	ENST00000261769.5:c.1387G>C	p.Glu463Gln	p.E463Q	ENST00000261769	NM_004360.3	463	Gag/Cag																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128051204	128051204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			155	121	524	0	ENST00000285398.2:c.119C>T	p.Ser40Leu	p.S40L	ENST00000285398	NM_000122.1	40	tCg/tTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			27	70	325	0	ENST00000304494.5:c.458-1G>C		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			27	70	325	0	ENST00000304494.5:c.458-1G>C		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			27	70	325	0	ENST00000304494.5:c.458-1G>C		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74733140	74733140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			179	99	610	0	ENST00000359995.5:c.103G>A	p.Glu35Lys	p.E35K	ENST00000359995	NM_001195427.1	35	Gag/Aag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748582	43748582	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			154	102	561	0	ENST00000382044.4:c.2224G>T	p.Glu742Ter	p.E742*	ENST00000382044	NM_001141980.1	742	Gaa/Taa																																																																														
AR	367	MSKCC	GRCh37	X	66766144	66766144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			86	25	232	0	ENST00000374690.3:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000374690	NM_000044.3	386	Cgc/Tgc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332307	70332307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			129	118	327	0	ENST00000373644.4:c.212G>T	p.Arg71Ile	p.R71I	ENST00000373644	NM_030625.2	71	aGa/aTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443534	49443534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			100	58	554	0	ENST00000301067.7:c.3837C>G	p.Ile1279Met	p.I1279M	ENST00000301067	NM_003482.3	1279	atC/atG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443583	49443583	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			102	55	587	0	ENST00000301067.7:c.3788C>G	p.Ser1263Ter	p.S1263*	ENST00000301067	NM_003482.3	1263	tCa/tGa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966987	25966987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			149	103	514	0	ENST00000435504.4:c.2219C>T	p.Thr740Met	p.T740M	ENST00000435504		740	aCg/aTg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99136536	99136536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			155	152	576	1	ENST00000074304.5:c.25C>T	p.Arg9Cys	p.R9C	ENST00000074304	NM_001134224.1	9	Cgc/Tgc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287454	33287475	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCTTTCAGCATCTATGCTGG	TTGCTTTCAGCATCTATGCTGG	-			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			99	59	483	0	ENST00000374542.5:c.1622_1643del	p.Ser541LeufsTer8	p.S541Lfs*8	ENST00000374542	NM_001141970.1	541	tCCAGCATAGATGCTGAAAGCAAt/tt																																																																														
FANCC	2176	MSKCC	GRCh37	9	97864071	97864071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55939573		P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			114	99	444	0	ENST00000289081.3:c.1595G>A	p.Arg532Lys	p.R532K	ENST00000289081	NM_000136.2	532	aGa/aAa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457371	67457371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			163	77	572	0	ENST00000327367.4:c.345G>A	p.Met115Ile	p.M115I	ENST00000327367	NM_005902.3	115	atG/atA																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112769504	112769504	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			53	105	340	0	ENST00000369452.4:c.1456C>G	p.Leu486Val	p.L486V	ENST00000369452	NM_007373.3	486	Ctt/Gtt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445352	49445352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			172	83	714	0	ENST00000301067.7:c.2114C>T	p.Ser705Leu	p.S705L	ENST00000301067	NM_003482.3	705	tCa/tTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347549	89347549	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			69	66	463	0	ENST00000301030.4:c.5401G>C	p.Glu1801Gln	p.E1801Q	ENST00000301030	NM_001256183.1	1801	Gaa/Caa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30321622	30321622	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			107	60	380	0	ENST00000322652.5:c.1477G>C	p.Glu493Gln	p.E493Q	ENST00000322652	NM_015355.2	493	Gag/Cag																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732371	74732371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			145	64	350	0	ENST00000359995.5:c.538C>T	p.Arg180Cys	p.R180C	ENST00000359995	NM_001195427.1	180	Cgt/Tgt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098844	178098844	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			161	69	401	0	ENST00000397062.3:c.201G>C	p.Glu67Asp	p.E67D	ENST00000397062	NM_006164.4	67	gaG/gaC																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474677	138474677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			226	24	363	0	ENST00000289153.2:c.316C>T	p.Leu106Phe	p.L106F	ENST00000289153	NM_006219.2	106	Ctt/Ttt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372262	55372262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041118-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			141	14	593	0	ENST00000297316.4:c.952C>T	p.Gln318Ter	p.Q318*	ENST00000297316	NM_022454.3	318	Cag/Tag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729658	41729658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	33	588	0	ENST00000242208.4:c.871C>A	p.Pro291Thr	p.P291T	ENST00000242208	NM_002192.2	291	Cct/Act																																																																														
NF1	4763	MSKCC	GRCh37	17	29684041	29684041	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	51	598	0	ENST00000358273.4:c.7802C>G	p.Ser2601Ter	p.S2601*	ENST00000358273	NM_001042492.2	2601	tCa/tGa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612129	189612129	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	33	632	0	ENST00000264731.3:c.1881T>A	p.Ser627Arg	p.S627R	ENST00000264731	NM_003722.4	627	agT/agA																																																																														
TP63	8626	MSKCC	GRCh37	3	189612144	189612825	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GACCCGGGGTGAGCGTGTTATTGATGCTGTGCGATTCACCCTCCGCCAGACCATCTCTTTCCCACCCCGAGATGAGTGGAATGACTTCAACTTTGACATGGATGCTCGCCGCAATAAGCAACAGCGCATCAAAGAGGAGGGGGAGTGAGCCTCACCATGTGAGCTCTTCCTATCCCTCTCCTAACTGCCAGCCCCCTAAAAGCACTCCTGCTTAATCTTCAAAGCCTTCTCCCTAGCTCCTCCCCTTCCTCTTGTCTGATTTCTTAGGGGAAGGAGAAGTAAGAGGCTACCTCTTACCTAACATCTGACCTGGCATCTAATTCTGATTCTGGCTTTAAGCCTTCAAAACTATAGCTTGCAGAACTGTAGCTGCCATGGCTAGGTAGAAGTGAGCAAAAAAGAGTTGGGTGTCTCCTTAAGCTGCAGAGATTTCTCATTGACTTTTATAAAGCATGTTCACCCTTATAGTCTAAGACTATATATATAAATGTATAAATATACAGTATAGATTTTTGGGTGGGGGGCATTGAGTATTGTTTAAAATGTAATTTAAATGAAAGAAAATTGAGTTGCACTTATTGACCATTTTTTAATTTACTTGTTTTGGATGGCTTGTCTATACTCCTTCCCTTAAGGGGTATCATGTATGGTGATAGGTATCTAGAGCTTAATGCTACATGTG	GACCCGGGGTGAGCGTGTTATTGATGCTGTGCGATTCACCCTCCGCCAGACCATCTCTTTCCCACCCCGAGATGAGTGGAATGACTTCAACTTTGACATGGATGCTCGCCGCAATAAGCAACAGCGCATCAAAGAGGAGGGGGAGTGAGCCTCACCATGTGAGCTCTTCCTATCCCTCTCCTAACTGCCAGCCCCCTAAAAGCACTCCTGCTTAATCTTCAAAGCCTTCTCCCTAGCTCCTCCCCTTCCTCTTGTCTGATTTCTTAGGGGAAGGAGAAGTAAGAGGCTACCTCTTACCTAACATCTGACCTGGCATCTAATTCTGATTCTGGCTTTAAGCCTTCAAAACTATAGCTTGCAGAACTGTAGCTGCCATGGCTAGGTAGAAGTGAGCAAAAAAGAGTTGGGTGTCTCCTTAAGCTGCAGAGATTTCTCATTGACTTTTATAAAGCATGTTCACCCTTATAGTCTAAGACTATATATATAAATGTATAAATATACAGTATAGATTTTTGGGTGGGGGGCATTGAGTATTGTTTAAAATGTAATTTAAATGAAAGAAAATTGAGTTGCACTTATTGACCATTTTTTAATTTACTTGTTTTGGATGGCTTGTCTATACTCCTTCCCTTAAGGGGTATCATGTATGGTGATAGGTATCTAGAGCTTAATGCTACATGTG	-			P-0048902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	26	623	0	ENST00000264731.3:c.1896_*534del		p.*632*	ENST00000264731	NM_003722.4	632																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729801	41729801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	11	438	0	ENST00000242208.4:c.728C>T	p.Ala243Val	p.A243V	ENST00000242208	NM_002192.2	243	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578387	7578399	+	protein_altering_variant	In_Frame_Del	DEL	GCGCTCATGGTGG	GCGCTCATGGTGG	CCGC			P-0048902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	106	641	1	ENST00000269305.4:c.531_543delinsGCGG	p.His178_Glu180del	p.H178_E180del	ENST00000269305	NM_001126112.2	177	ccCCACCATGAGCGC/ccGCGG																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644490	18644490	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs181773550		P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	37	438	0	ENST00000266497.5:c.2668G>A	p.Asp890Asn	p.D890N	ENST00000266497		890	Gat/Aat																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321372	1321372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	30	495	0	ENST00000381566.1:c.383C>T	p.Ser128Leu	p.S128L	ENST00000381566		128	tCg/tTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499732	8499732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	71	616	0	ENST00000356435.5:c.2237G>A	p.Gly746Glu	p.G746E	ENST00000356435		746	gGa/gAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636727	8636727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	39	319	0	ENST00000356435.5:c.182G>A	p.Gly61Glu	p.G61E	ENST00000356435		61	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112178162	112178162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	85	382	0	ENST00000257430.4:c.6871C>T	p.Gln2291Ter	p.Q2291*	ENST00000257430	NM_000038.5	2291	Caa/Taa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199573	138199573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	32	293	0	ENST00000237289.4:c.991G>A	p.Asp331Asn	p.D331N	ENST00000237289	NM_001270507.1	331	Gat/Aat																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047190	180047190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	37	605	2	ENST00000261937.6:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000261937	NM_182925.4	842	cGa/cAa																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271264	26271264	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	52	559	1	ENST00000305910.3:c.349C>T	p.Arg117Ter	p.R117*	ENST00000305910	NM_003534.2	117	Cga/Tga																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612890	228612890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	50	600	1	ENST00000366696.1:c.137C>T	p.Thr46Met	p.T46M	ENST00000366696	NM_003493.2	46	aCg/aTg																																																																														
LYN	4067	MSKCC	GRCh37	8	56864630	56864630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	150	603	1	ENST00000519728.1:c.593G>A	p.Arg198Gln	p.R198Q	ENST00000519728	NM_002350.3	198	cGa/cAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444362	50444362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	98	388	0	ENST00000331340.3:c.292G>A	p.Asp98Asn	p.D98N	ENST00000331340	NM_006060.4	98	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	67	351	1				ENST00000310581	NM_198253.2																																																																																
SPRED1	161742	MSKCC	GRCh37	15	38591587	38591587	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	109	421	1	ENST00000299084.4:c.46C>T	p.Arg16Ter	p.R16*	ENST00000299084	NM_152594.2	16	Cga/Tga																																																																														
CBL	867	MSKCC	GRCh37	11	119148931	119148931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	91	483	0	ENST00000264033.4:c.1151G>C	p.Cys384Ser	p.C384S	ENST00000264033	NM_005188.3	384	tGt/tCt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470970	25470970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	43	555	0	ENST00000264709.3:c.791C>T	p.Pro264Leu	p.P264L	ENST00000264709	NM_175629.2	264	cCc/cTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967241	93967241	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	39	337	0	ENST00000369303.4:c.2111G>A	p.Gly704Glu	p.G704E	ENST00000369303	NM_004440.3	704	gGg/gAg																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46509460	46509460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	108	535	0	ENST00000262741.5:c.1271C>T	p.Ser424Phe	p.S424F	ENST00000262741	NM_003629.3	424	tCt/tTt																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46597576	46597576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	58	560	0	ENST00000262741.5:c.49G>A	p.Glu17Lys	p.E17K	ENST00000262741	NM_003629.3	17	Gag/Aag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458453	120458453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	67	573	0	ENST00000256646.2:c.6892C>T	p.Arg2298Trp	p.R2298W	ENST00000256646	NM_024408.3	2298	Cgg/Tgg																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023000	33023000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	135	426	0	ENST00000300177.4:c.109G>C	p.Asp37His	p.D37H	ENST00000300177	NM_001191322.1	37	Gac/Cac																																																																														
MGA	23269	MSKCC	GRCh37	15	41989145	41989145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	118	567	0	ENST00000219905.7:c.1937C>T	p.Pro646Leu	p.P646L	ENST00000219905	NM_001164273.1	646	cCt/cTt																																																																														
CDH1	999	MSKCC	GRCh37	16	68844193	68844193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	114	627	0	ENST00000261769.5:c.781G>C	p.Glu261Gln	p.E261Q	ENST00000261769	NM_004360.3	261	Gaa/Caa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15960850	15960850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	42	250	0	ENST00000268712.3:c.6370C>T	p.Leu2124Phe	p.L2124F	ENST00000268712	NM_006311.3	2124	Ctt/Ttt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17120484	17120484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184718358		P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	85	637	0	ENST00000285071.4:c.1075C>T	p.Pro359Ser	p.P359S	ENST00000285071	NM_144997.5	359	Cct/Tct																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325886	30325886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	79	360	0	ENST00000322652.5:c.2084C>T	p.Ser695Phe	p.S695F	ENST00000322652	NM_015355.2	695	tCc/tTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367872	15367872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	121	669	1	ENST00000263377.2:c.1454C>T	p.Ser485Phe	p.S485F	ENST00000263377	NM_058243.2	485	tCc/tTc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39742718	39742718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	118	511	0	ENST00000361337.2:c.1561C>A	p.Gln521Lys	p.Q521K	ENST00000361337	NM_003286.2	521	Cag/Aag																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319897	62319897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	48	651	0	ENST00000508582.2:c.1811G>A	p.Arg604Lys	p.R604K	ENST00000508582		604	aGg/aAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715663	30715663	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	109	367	0	ENST00000359013.4:c.1396T>A	p.Ser466Thr	p.S466T	ENST00000359013	NM_001024847.2	466	Tcc/Acc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164935	47164935	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	78	303	0	ENST00000409792.3:c.1191A>T	p.Glu397Asp	p.E397D	ENST00000409792	NM_014159.6	397	gaA/gaT																																																																														
MST1R	4486	MSKCC	GRCh37	3	49929005	49929005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	117	534	0	ENST00000296474.3:c.3361G>A	p.Glu1121Lys	p.E1121K	ENST00000296474	NM_002447.2	1121	Gag/Aag																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72881556	72881556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	114	391	0	ENST00000325599.8:c.563C>T	p.Ala188Val	p.A188V	ENST00000325599	NM_018130.2	188	gCc/gTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554860	187554860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	92	377	0	ENST00000441802.2:c.4301G>T	p.Gly1434Val	p.G1434V	ENST00000441802	NM_005245.3	1434	gGa/gTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630942	187630942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	44	520	0	ENST00000441802.2:c.40C>T	p.Leu14Phe	p.L14F	ENST00000441802	NM_005245.3	14	Ctc/Ttc																																																																														
SDHA	6389	MSKCC	GRCh37	5	223658	223658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	85	534	0	ENST00000264932.6:c.125G>A	p.Arg42Lys	p.R42K	ENST00000264932	NM_004168.2	42	aGg/aAg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526756	31526756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	62	598	0	ENST00000344624.3:c.284C>G	p.Pro95Arg	p.P95R	ENST00000344624		95	cCc/cGc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564767	86564767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	83	603	0	ENST00000274376.6:c.499G>A	p.Glu167Lys	p.E167K	ENST00000274376	NM_002890.2	167	Gaa/Aaa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176516670	176516670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	33	588	0	ENST00000292408.4:c.67G>A	p.Glu23Lys	p.E23K	ENST00000292408	NM_213647.1	23	Gag/Aag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729717	41729717	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	113	505	0	ENST00000242208.4:c.812A>T	p.Lys271Met	p.K271M	ENST00000242208	NM_002192.2	271	aAg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860262	151860262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	97	477	0	ENST00000262189.6:c.10400G>A	p.Gly3467Glu	p.G3467E	ENST00000262189	NM_170606.2	3467	gGa/gAa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205347	38205347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	74	652	1	ENST00000317025.8:c.343G>A	p.Glu115Lys	p.E115K	ENST00000317025	NM_023034.1	115	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295253	1295255	+	upstream_gene_variant	5'Flank	DEL	GGG	GGG	AA			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	21	349	2				ENST00000310581	NM_198253.2																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63537575	63537577	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GGA	GGA	AT			P-0048904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	141	458	1	ENST00000307078.5:c.1055_1057delinsAT	p.Phe352TyrfsTer11	p.F352Yfs*11	ENST00000307078	NM_004655.3	352	tTCCcg/tATcg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2951891	2951891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116583746		P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	116	575	0	ENST00000396946.4:c.3059C>T	p.Thr1020Met	p.T1020M	ENST00000396946	NM_032415.4	1020	aCg/aTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	199	432	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	91	445	0	ENST00000371953.3:c.389delG	p.Arg130GlnfsTer4	p.R130Qfs*4	ENST00000371953	NM_000314.4	130	cGa/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	100	433	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	56	479	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417865	138417865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	100	499	1	ENST00000289153.2:c.1654G>A	p.Glu552Lys	p.E552K	ENST00000289153	NM_006219.2	552	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101273	27101273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	48	599	0	ENST00000324856.7:c.4555C>T	p.Gln1519Ter	p.Q1519*	ENST00000324856	NM_006015.4	1519	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831708	72831708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	44	566	0	ENST00000268489.5:c.4873C>T	p.Arg1625Trp	p.R1625W	ENST00000268489	NM_006885.3	1625	Cgg/Tgg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592088	67592088	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	87	349	0	ENST00000274335.5:c.1907del	p.Asn636ThrfsTer26	p.N636Tfs*26	ENST00000274335		635	gAa/ga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101252	27101252	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	157	602	0	ENST00000324856.7:c.4534C>T	p.Gln1512Ter	p.Q1512*	ENST00000324856	NM_006015.4	1512	Cag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482408	56482408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	118	602	0	ENST00000267101.3:c.956T>C	p.Met319Thr	p.M319T	ENST00000267101	NM_001982.3	319	aTg/aCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828719	72828719	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	104	566	2	ENST00000268489.5:c.7862del	p.Lys2621ArgfsTer24	p.K2621Rfs*24	ENST00000268489	NM_006885.3	2621	aAg/ag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010438	48010443	+	inframe_deletion	In_Frame_Del	DEL	GGCCTC	GGCCTC	-			P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	72	372	0	ENST00000234420.5:c.70_75del	p.Ser24_Ala25del	p.S24_A25del	ENST00000234420	NM_000179.2	22	aaGGCCTCg/aag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370838	55370839	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	C			P-0048905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	47	455	0	ENST00000297316.4:c.140_141delinsC	p.Glu47AlafsTer26	p.E47Afs*26	ENST00000297316	NM_022454.3	47	gAG/gC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	297	449	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	325	617	1	ENST00000269305.4:c.815T>A	p.Val272Glu	p.V272E	ENST00000269305	NM_001126112.2	272	gTg/gAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	269	554	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	343	337	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943662	9943662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	285	527	2	ENST00000330684.3:c.1279G>A	p.Glu427Lys	p.E427K	ENST00000330684	NM_001134407.1	427	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685309	89685309	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	128	310	0	ENST00000371953.3:c.204C>A	p.Tyr68Ter	p.Y68*	ENST00000371953	NM_000314.4	68	taC/taA																																																																														
PGR	5241	MSKCC	GRCh37	11	100996816	100996816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	124	515	0	ENST00000325455.5:c.1711G>C	p.Gly571Arg	p.G571R	ENST00000325455	NM_001202474.3	571	Ggg/Cgg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578374	212578374	+	splice_acceptor_variant	Splice_Site	DEL	C	C	-			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	12	212	0	ENST00000342788.4:c.884-1del		p.X295_splice	ENST00000342788	NM_005235.2	295																																																																															
EP300	2033	MSKCC	GRCh37	22	41564516	41564517	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	272	455	2	ENST00000263253.7:c.3939_3940del	p.Asn1314SerfsTer3	p.N1314Sfs*3	ENST00000263253	NM_001429.3	1313	cAG/c																																																																														
APC	324	MSKCC	GRCh37	5	112175659	112175659	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	369	328	1	ENST00000257430.4:c.4368A>C	p.Lys1456Asn	p.K1456N	ENST00000257430	NM_000038.5	1456	aaA/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0048909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	517	503	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916933	+	missense_variant	Missense_Mutation	ONP	GCAA	GCAA	TCAG			P-0048909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	239	407	0	ENST00000263967.3:c.317_320delinsTCAG	p.Gly106_Asn107delinsValSer	p.G106_N107delinsVS	ENST00000263967	NM_006218.2	106	gGCAAc/gTCAGc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110251213	110251213	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0048909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	389	478	0	ENST00000374672.4:c.124A>G	p.Asn42Asp	p.N42D	ENST00000374672	NM_004235.4	42	Aac/Gac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	178	509	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482425	56482425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	173	425	0	ENST00000267101.3:c.973G>A	p.Gly325Arg	p.G325R	ENST00000267101	NM_001982.3	325	Gga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0048910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	132	384	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257176	16257176	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	131	482	0	ENST00000375759.3:c.4441G>C	p.Glu1481Gln	p.E1481Q	ENST00000375759	NM_015001.2	1481	Gaa/Caa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725469	162725469	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	73	432	0	ENST00000367921.3:c.581A>T	p.Tyr194Phe	p.Y194F	ENST00000367921	NM_006182.2	194	tAc/tTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2214559	2214559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	114	455	1	ENST00000398665.3:c.1887G>T	p.Gln629His	p.Q629H	ENST00000398665	NM_032482.2	629	caG/caT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	80	413	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	69	326	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0048911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	102	333	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0048911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	112	411	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259497	89259497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	106	420	0	ENST00000336596.2:c.641A>G	p.Asp214Gly	p.D214G	ENST00000336596	NM_005233.5	214	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	298	511	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	231	325	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0048913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	780	710	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
KIT	3815	MSKCC	GRCh37	4	55599314	55599314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	328	584	1	ENST00000288135.5:c.2440G>A	p.Ala814Thr	p.A814T	ENST00000288135	NM_000222.2	814	Gcc/Acc																																																																														
SETD8	0	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0048913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	11	50	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123685	11123685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	520	639	0	ENST00000344626.4:c.2335G>A	p.Asp779Asn	p.D779N	ENST00000344626	NM_003072.3	779	Gac/Aac																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180280	38180280	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	171	669	0	ENST00000396334.3:c.128G>T	p.Arg43Leu	p.R43L	ENST00000396334	NM_002468.4	43	cGg/cTg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163793	72163793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	71	470	0	ENST00000357731.5:c.565G>A	p.Asp189Asn	p.D189N	ENST00000357731	NM_173808.2	189	Gac/Aac																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725069	162725069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	461	456	0	ENST00000367921.3:c.541G>A	p.Glu181Lys	p.E181K	ENST00000367921	NM_006182.2	181	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390476	118390476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	169	520	0	ENST00000534358.1:c.11290C>A	p.His3764Asn	p.H3764N	ENST00000534358	NM_005933.3	3764	Cac/Aac																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644954	67644954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1933	172	590	0	ENST00000264010.4:c.219G>A	p.Met73Ile	p.M73I	ENST00000264010	NM_006565.3	73	atG/atA																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067374	37067374	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	148	514	0	ENST00000231790.2:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000231790	NM_000249.3	429	Gag/Tag																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502374	186502374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	224	457	0	ENST00000323963.5:c.97G>A	p.Asp33Asn	p.D33N	ENST00000323963		33	Gat/Aat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404405	139404405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	214	685	0	ENST00000277541.6:c.2749C>T	p.His917Tyr	p.H917Y	ENST00000277541	NM_017617.3	917	Cac/Tac																																																																														
ATM	472	MSKCC	GRCh37	11	108117733	108117734	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	59	252	1	ENST00000278616.4:c.945dup	p.Tyr316IlefsTer2	p.Y316Ifs*2	ENST00000278616	NM_000051.3	315	tta/ttAa																																																																														
ATM	472	MSKCC	GRCh37	11	108204687	108204687	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	67	219	0	ENST00000278616.4:c.8002G>T	p.Glu2668Ter	p.E2668*	ENST00000278616	NM_000051.3	2668	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	141	307	0				ENST00000310581	NM_198253.2																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0048917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	16	22	1	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200024	123200024	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	100	126	0	ENST00000218089.9:c.2097-1G>A		p.X699_splice	ENST00000218089	NM_001042749.1	699																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44820528	44820528	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	110	227	0	ENST00000377967.4:c.226-1G>A		p.X76_splice	ENST00000377967	NM_021140.2	76																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201933	102201933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	47	370	0	ENST00000263464.3:c.1285G>A	p.Glu429Lys	p.E429K	ENST00000263464	NM_001165.4	429	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499765	8499765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	38	619	0	ENST00000356435.5:c.2204C>T	p.Pro735Leu	p.P735L	ENST00000356435		735	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1264619	1264619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	151	759	0	ENST00000310581.5:c.2743G>A	p.Gly915Ser	p.G915S	ENST00000310581	NM_198253.2	915	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579484	7579491	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGCAT	TCTGGCAT	-			P-0048917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	357	710	0	ENST00000269305.4:c.196_203del	p.Met66GlyfsTer80	p.M66Gfs*80	ENST00000269305	NM_001126112.2	66	ATGCCAGAg/g																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369246	40369246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	40	660	0	ENST00000293328.3:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000293328	NM_012448.3	438	Gaa/Aaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680734	88680734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	31	667	1	ENST00000360948.2:c.523C>A	p.Gln175Lys	p.Q175K	ENST00000360948	NM_001012338.2	175	Cag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786784	3786784	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	213	467	0	ENST00000262367.5:c.4427del	p.Pro1476GlnfsTer74	p.P1476Qfs*74	ENST00000262367	NM_004380.2	1476	cCa/ca																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217123	66217123	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	22	411	0	ENST00000273854.3:c.2492C>G	p.Ala831Gly	p.A831G	ENST00000273854	NM_004439.5	831	gCa/gGa																																																																														
ATRX	546	MSKCC	GRCh37	X	76874363	76874363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	217	309	0	ENST00000373344.5:c.5359G>T	p.Gly1787Cys	p.G1787C	ENST00000373344	NM_000489.3	1787	Ggt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	28	455	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	16	323	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1207061	1207063	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	80	631	0	ENST00000326873.7:c.151_153del	p.Met51del	p.M51del	ENST00000326873	NM_000455.4	50	cTGAtg/ctg																																																																														
ATRX	546	MSKCC	GRCh37	X	76763976	76763976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	51	626	1	ENST00000373344.5:c.7332G>T	p.Leu2444Phe	p.L2444F	ENST00000373344	NM_000489.3	2444	ttG/ttT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	82	621	0	ENST00000171111.5:c.1409G>T	p.Arg470Leu	p.R470L	ENST00000171111	NM_203500.1	470	cGt/cTt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680046	30680046	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	49	561	0	ENST00000376406.3:c.1673delG	p.Gly558AspfsTer10	p.G558Dfs*10	ENST00000376406	NM_014641.2	558	gGa/ga																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794135	242794135	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	59	603	0	ENST00000334409.5:c.593G>A	p.Gly198Glu	p.G198E	ENST00000334409	NM_005018.2	198	gGg/gAg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115251208	115251208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	29	498	0	ENST00000369535.4:c.518G>T	p.Ser173Ile	p.S173I	ENST00000369535	NM_002524.4	173	aGc/aTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100469	8100469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	58	665	0	ENST00000346208.3:c.443C>G	p.Pro148Arg	p.P148R	ENST00000346208		148	cCg/cGg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482652	56482652	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	51	499	0	ENST00000267101.3:c.1109G>C	p.Gly370Ala	p.G370A	ENST00000267101	NM_001982.3	370	gGa/gCa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14038692	14038692	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	37	305	0	ENST00000311895.7:c.2017G>T	p.Gly673Cys	p.G673C	ENST00000311895	NM_005236.2	673	Ggt/Tgt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81891874	81891874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	35	399	0	ENST00000359376.3:c.344C>G	p.Ser115Cys	p.S115C	ENST00000359376	NM_002661.3	115	tCt/tGt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39567820	39567820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	17	330	0	ENST00000262039.4:c.576G>C	p.Trp192Cys	p.W192C	ENST00000262039	NM_002647.2	192	tgG/tgC																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2220122	2220122	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	56	552	0	ENST00000398665.3:c.2709del	p.Val904CysfsTer164	p.V904Cfs*164	ENST00000398665	NM_032482.2	903	Ccc/cc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129845	55129845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	34	429	0	ENST00000257290.5:c.379G>T	p.Ala127Ser	p.A127S	ENST00000257290	NM_006206.4	127	Gcc/Tcc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217156	66217156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	38	487	0	ENST00000273854.3:c.2459G>T	p.Gly820Val	p.G820V	ENST00000273854	NM_004439.5	820	gGa/gTa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026530	6026530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	57	673	0	ENST00000265849.7:c.1866G>T	p.Met622Ile	p.M622I	ENST00000265849	NM_000535.5	622	atG/atT																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444399	50444399	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	32	427	0	ENST00000331340.3:c.329T>A	p.Ile110Asn	p.I110N	ENST00000331340	NM_006060.4	110	aTt/aAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55086992	55086992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	37	356	0	ENST00000275493.2:c.22G>A	p.Gly8Arg	p.G8R	ENST00000275493	NM_005228.3	8	Ggg/Agg																																																																														
SYK	6850	MSKCC	GRCh37	9	93639953	93639953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	32	355	0	ENST00000375746.1:c.1282G>T	p.Asp428Tyr	p.D428Y	ENST00000375746	NM_001174167.1	428	Gac/Tac																																																																														
MED12	9968	MSKCC	GRCh37	X	70349673	70349673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	44	561	0	ENST00000374080.3:c.3835G>T	p.Ala1279Ser	p.A1279S	ENST00000374080		1279	Gcc/Tcc																																																																														
BTK	695	MSKCC	GRCh37	X	100608315	100608315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	39	574	0	ENST00000308731.7:c.1775C>A	p.Ser592Tyr	p.S592Y	ENST00000308731	NM_000061.2	592	tCc/tAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47035983	47035985	+	missense_variant,splice_region_variant	Missense_Mutation	ONP	AAG	AAG	CAT			P-0048918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	62	641	0	ENST00000329236.7:c.430_432delinsCAT	p.Lys144His	p.K144H	ENST00000329236	NM_001204466.1	144	AAG/CAT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	612	591	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882319	89882319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	245	587	0	ENST00000389301.3:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000389301	NM_000135.2	52	cGa/cAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913409		P-0048921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	166	373	0	ENST00000349496.5:c.134C>G	p.Ser45Cys	p.S45C	ENST00000349496	NM_001904.3	45	tCt/tGt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244139	46244139	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	376	468	0	ENST00000334344.6:c.2233C>T	p.Gln745Ter	p.Q745*	ENST00000334344	NM_152641.2	745	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	582	323	0				ENST00000310581	NM_198253.2																																																																																
SMYD3	64754	MSKCC	GRCh37	1	246490544	246490544	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	146	547	0	ENST00000388985.4:c.490C>T	p.Gln164Ter	p.Q164*	ENST00000388985		164	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023069	27023069	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	21	99	0	ENST00000324856.7:c.175G>T	p.Glu59Ter	p.E59*	ENST00000324856	NM_006015.4	59	Gag/Tag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983105	201983106	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	366	606	0	ENST00000359651.3:c.959dup	p.Asn321GlufsTer150	p.N321Efs*150	ENST00000359651		318	-/A																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477109	67477109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	124	522	0	ENST00000327367.4:c.916G>A	p.Glu306Lys	p.E306K	ENST00000327367	NM_005902.3	306	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867123	45867123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	206	582	1	ENST00000391945.4:c.996C>A	p.Phe332Leu	p.F332L	ENST00000391945	NM_000400.3	332	ttC/ttA																																																																														
SOS1	6654	MSKCC	GRCh37	2	39239479	39239479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	56	415	0	ENST00000402219.2:c.2178G>A	p.Met726Ile	p.M726I	ENST00000402219	NM_005633.3	726	atG/atA																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021805	71021805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	208	236	0	ENST00000318789.4:c.1553G>A	p.Ser518Asn	p.S518N	ENST00000318789	NM_032682.5	518	aGt/aAt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044956	47044956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	428	360	0	ENST00000329236.7:c.2048G>T	p.Cys683Phe	p.C683F	ENST00000329236	NM_001204466.1	683	tGt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438058	49438058	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0048923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	126	594	0	ENST00000301067.7:c.5113A>T	p.Lys1705Ter	p.K1705*	ENST00000301067	NM_003482.3	1705	Aaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577554	7577562	+	inframe_deletion	In_Frame_Del	DEL	TGCAGGAAC	TGCAGGAAC	-			P-0048923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	234	572	0	ENST00000269305.4:c.719_727del	p.Ser240_Cys242del	p.S240_C242del	ENST00000269305	NM_001126112.2	240	aGTTCCTGCAtg/atg																																																																														
NF2	4771	MSKCC	GRCh37	22	30064406	30064406	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	219	412	0	ENST00000338641.4:c.970C>T	p.Gln324Ter	p.Q324*	ENST00000338641	NM_000268.3	324	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16263783	16263783	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	154	409	0	ENST00000375759.3:c.10152G>C	p.Lys3384Asn	p.K3384N	ENST00000375759	NM_015001.2	3384	aaG/aaC																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111116	193111116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	24	229	0	ENST00000367435.3:c.649G>A	p.Glu217Lys	p.E217K	ENST00000367435	NM_024529.4	217	Gag/Aag																																																																														
CDC73	79577	MSKCC	GRCh37	1	193202134	193202134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	62	198	0	ENST00000367435.3:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000367435	NM_024529.4	389	tCa/tTa																																																																														
RET	5979	MSKCC	GRCh37	10	43615014	43615014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	143	508	0	ENST00000355710.3:c.2428G>T	p.Gly810Cys	p.G810C	ENST00000355710	NM_020975.4	810	Ggc/Tgc																																																																														
RAD52	5893	MSKCC	GRCh37	12	1040389	1040389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	44	360	0	ENST00000358495.3:c.183G>C	p.Gln61His	p.Q61H	ENST00000358495	NM_134424.2	61	caG/caC																																																																														
RB1	5925	MSKCC	GRCh37	13	48881435	48881435	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	25	142	0	ENST00000267163.4:c.157G>T	p.Glu53Ter	p.E53*	ENST00000267163	NM_000321.2	53	Gaa/Taa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56871603	56871603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	107	344	0	ENST00000308159.5:c.1983G>C	p.Glu661Asp	p.E661D	ENST00000308159	NM_014669.4	661	gaG/gaC																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953195	81953195	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187454354		P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	51	288	0	ENST00000359376.3:c.2161G>A	p.Glu721Lys	p.E721K	ENST00000359376	NM_002661.3	721	Gag/Aag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89806439	89806439	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	117	379	0	ENST00000389301.3:c.3897G>C	p.Lys1299Asn	p.K1299N	ENST00000389301	NM_000135.2	1299	aaG/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	133	441	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
JAK3	3718	MSKCC	GRCh37	19	17942524	17942524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	200	585	3	ENST00000458235.1:c.2764G>A	p.Asp922Asn	p.D922N	ENST00000458235	NM_000215.3	922	Gat/Aat																																																																														
XPO1	7514	MSKCC	GRCh37	2	61760981	61760981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	21	283	0	ENST00000401558.2:c.52G>A	p.Asp18Asn	p.D18N	ENST00000401558	NM_003400.3	18	Gat/Aat																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99193530	99193530	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	227	546	0	ENST00000074304.5:c.2725G>C	p.Glu909Gln	p.E909Q	ENST00000074304	NM_001134224.1	909	Gag/Cag																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24129410	24129410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	76	319	0	ENST00000263121.7:c.54G>C	p.Gln18His	p.Q18H	ENST00000263121	NM_003073.3	18	caG/caC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	25	315	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430380	181430380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	59	409	0	ENST00000325404.1:c.232G>C	p.Glu78Gln	p.E78Q	ENST00000325404	NM_003106.3	78	Gag/Cag																																																																														
KIT	3815	MSKCC	GRCh37	4	55593431	55593431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs72550822		P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	18	275	0	ENST00000288135.5:c.1588G>A	p.Val530Ile	p.V530I	ENST00000288135	NM_000222.2	530	Gta/Ata																																																																														
APC	324	MSKCC	GRCh37	5	112178031	112178031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	27	247	0	ENST00000257430.4:c.6740C>G	p.Ser2247Cys	p.S2247C	ENST00000257430	NM_000038.5	2247	tCt/tGt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148514390	148514390	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	20	329	0	ENST00000320356.2:c.1334T>A	p.Phe445Tyr	p.F445Y	ENST00000320356	NM_004456.4	445	tTt/tAt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38277050	38277050	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	101	370	1	ENST00000425967.3:c.1377+1G>A		p.X459_splice	ENST00000425967	NM_001174067.1	459																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44970630	44970630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	31	284	0	ENST00000377967.4:c.4180C>T	p.Pro1394Ser	p.P1394S	ENST00000377967	NM_021140.2	1394	Cct/Tct																																																																														
MED12	9968	MSKCC	GRCh37	X	70346195	70346195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	132	457	0	ENST00000374080.3:c.2546C>T	p.Ser849Phe	p.S849F	ENST00000374080		849	tCc/tTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224464	123224464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	47	351	0	ENST00000218089.9:c.3317G>A	p.Arg1106Lys	p.R1106K	ENST00000218089	NM_001042749.1	1106	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	85	429	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593413	55593413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	35	273	0	ENST00000288135.5:c.1570C>T	p.Pro524Ser	p.P524S	ENST00000288135	NM_000222.2	524	Cct/Tct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399444	139399444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	90	566	0	ENST00000277541.6:c.4699G>A	p.Glu1567Lys	p.E1567K	ENST00000277541	NM_017617.3	1567	Gag/Aag																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149503914	149503914	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56339845		P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	81	490	4	ENST00000261799.4:c.1922G>A	p.Arg641His	p.R641H	ENST00000261799	NM_002609.3	641	cGc/cAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602918	10602918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	112	467	0	ENST00000171111.5:c.660C>G	p.Phe220Leu	p.F220L	ENST00000171111	NM_203500.1	220	ttC/ttG																																																																														
STK11	6794	MSKCC	GRCh37	19	1207197	1207198	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	93	461	0	ENST00000326873.7:c.286_287dup	p.Lys97ArgfsTer7	p.K97Rfs*7	ENST00000326873	NM_000455.4	95	-/AA																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026998	48026998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	57	329	1	ENST00000234420.5:c.1876C>T	p.Gln626Ter	p.Q626*	ENST00000234420	NM_000179.2	626	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306733	41306733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	91	449	0	ENST00000373198.4:c.926C>G	p.Pro309Arg	p.P309R	ENST00000373198	NM_133170.3	309	cCa/cGa																																																																														
NF2	4771	MSKCC	GRCh37	22	30067863	30067863	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	45	351	0	ENST00000338641.4:c.1048G>T	p.Glu350Ter	p.E350*	ENST00000338641	NM_000268.3	350	Gaa/Taa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505011	149505011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	56	279	0	ENST00000261799.4:c.1804C>A	p.Leu602Met	p.L602M	ENST00000261799	NM_002609.3	602	Ctg/Atg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729266	41729266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	38	262	0	ENST00000242208.4:c.1263G>T	p.Glu421Asp	p.E421D	ENST00000242208	NM_002192.2	421	gaG/gaT																																																																														
NBN	4683	MSKCC	GRCh37	8	90990552	90990552	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	44	214	0	ENST00000265433.3:c.481-1G>A		p.X161_splice	ENST00000265433	NM_002485.4	161																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101894941	101894941	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	46	273	0	ENST00000374994.4:c.494C>A	p.Ser165Ter	p.S165*	ENST00000374994	NM_004612.2	165	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	238	480	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175456	112175457	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0048970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	133	237	0	ENST00000257430.4:c.4166_4167del	p.Ser1389CysfsTer5	p.S1389Cfs*5	ENST00000257430	NM_000038.5	1389	TCt/t																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89176365	89176365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	38	201	0	ENST00000336596.2:c.95T>C	p.Leu32Pro	p.L32P	ENST00000336596	NM_005233.5	32	cTa/cCa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	99	463	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	42	476	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	81	418	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720670	89720670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	85	207	0	ENST00000371953.3:c.821G>A	p.Trp274Ter	p.W274*	ENST00000371953	NM_000314.4	274	tGg/tAg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660469	67660469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	82	310	0	ENST00000264010.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000264010	NM_006565.3	457	Cga/Tga																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	165	440	0	ENST00000397062.3:c.246A>T	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaT																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562378	21562378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	99	560	0	ENST00000382592.4:c.1541C>T	p.Pro514Leu	p.P514L	ENST00000382592	NM_014572.2	514	cCg/cTg																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197129	26197129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	85	477	0	ENST00000356476.2:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000356476		117	cGa/cAa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40474492	40474492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	112	361	0	ENST00000264657.5:c.1909G>A	p.Val637Met	p.V637M	ENST00000264657	NM_139276.2	637	Gtg/Atg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711918	89711924	+	frameshift_variant	Frame_Shift_Del	DEL	GCTACCT	GCTACCT	-			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	41	377	0	ENST00000371953.3:c.537_543del	p.Tyr180Ter	p.Y180*	ENST00000371953	NM_000314.4	179	aGCTACCTg/ag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48032806	48032806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	92	330	0	ENST00000234420.5:c.3606G>A	p.Met1202Ile	p.M1202I	ENST00000234420	NM_000179.2	1202	atG/atA																																																																														
TOP1	7150	MSKCC	GRCh37	20	39746860	39746860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	46	239	0	ENST00000361337.2:c.1874C>T	p.Ala625Val	p.A625V	ENST00000361337	NM_003286.2	625	gCt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916958	178916959	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAAATT			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	62	279	0	ENST00000263967.3:c.347_352dup	p.Glu116_Ile117dup	p.E116_I117dup	ENST00000263967	NM_006218.2	116	-/GAAATT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681792	30681792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	112	457	0	ENST00000376406.3:c.305G>T	p.Arg102Ile	p.R102I	ENST00000376406	NM_014641.2	102	aGa/aTa																																																																														
PIM1	5292	MSKCC	GRCh37	6	37139004	37139005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	135	569	0	ENST00000373509.5:c.347dup	p.Val117ArgfsTer92	p.V117Rfs*92	ENST00000373509	NM_002648.3	115	agt/agTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	55	300	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	51	592	1	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857125	9857125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	44	246	0	ENST00000330684.3:c.4276G>A	p.Glu1426Lys	p.E1426K	ENST00000330684	NM_001134407.1	1426	Gag/Aag																																																																														
ATM	472	MSKCC	GRCh37	11	108201099	108201099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	33	275	0	ENST00000278616.4:c.7466C>A	p.Ser2489Tyr	p.S2489Y	ENST00000278616	NM_000051.3	2489	tCc/tAc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870187	155870187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	58	348	0	ENST00000368323.3:c.652G>A	p.Val218Ile	p.V218I	ENST00000368323	NM_006912.5	218	Gta/Ata																																																																														
MGA	23269	MSKCC	GRCh37	15	42041905	42041905	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	66	379	0	ENST00000219905.7:c.6100G>T	p.Glu2034Ter	p.E2034*	ENST00000219905	NM_001164273.1	2034	Gaa/Taa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576234	88576234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	71	452	0	ENST00000360948.2:c.1439C>A	p.Pro480Gln	p.P480Q	ENST00000360948	NM_001012338.2	480	cCa/cAa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99459927	99459927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	56	295	0	ENST00000268035.6:c.2023G>T	p.Asp675Tyr	p.D675Y	ENST00000268035	NM_000875.3	675	Gac/Tac																																																																														
YES1	7525	MSKCC	GRCh37	18	745967	745967	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	44	330	0	ENST00000314574.4:c.555A>T	p.Arg185Ser	p.R185S	ENST00000314574	NM_005433.3	185	agA/agT																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716037	52716037	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			708	100	586	0	ENST00000322088.6:c.602T>C	p.Val201Ala	p.V201A	ENST00000322088	NM_014225.5	201	gTc/gCc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89156983	89156983	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	44	356	0	ENST00000336596.2:c.85G>T	p.Glu29Ter	p.E29*	ENST00000336596	NM_005233.5	29	Gaa/Taa																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664849	138664849	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	35	137	0	ENST00000330315.3:c.716C>A	p.Pro239His	p.P239H	ENST00000330315	NM_023067.3	239	cCt/cAt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509999	106509999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	47	362	0	ENST00000359195.3:c.1993C>A	p.Gln665Lys	p.Q665K	ENST00000359195	NM_002649.2	665	Cag/Aag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223881	53223881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			790	86	662	0	ENST00000375401.3:c.3478G>T	p.Gly1160Cys	p.G1160C	ENST00000375401	NM_004187.3	1160	Ggt/Tgt																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480500	123480500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	26	407	0	ENST00000371139.4:c.8C>T	p.Ala3Val	p.A3V	ENST00000371139	NM_001114937.2	3	gCa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	209	394	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089532	27089532	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	179	468	0	ENST00000324856.7:c.2488G>T	p.Gly830Ter	p.G830*	ENST00000324856	NM_006015.4	830	Gga/Tga																																																																														
FANCA	2175	MSKCC	GRCh37	16	89815068	89815074	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATCTCAG	ATCTCAG	-			P-0048802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	169	406	0	ENST00000389301.3:c.3341_3347del	p.Ser1114Ter	p.S1114*	ENST00000389301	NM_000135.2	1114	tCTGAGATg/tg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460502	8460502	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	23	313	0	ENST00000356435.5:c.3784G>C	p.Asp1262His	p.D1262H	ENST00000356435		1262	Gat/Cat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509006	106509006	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201525740		P-0048803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	114	398	1	ENST00000359195.3:c.1000G>A	p.Gly334Ser	p.G334S	ENST00000359195	NM_002649.2	334	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579590	7579591	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CT			P-0048803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	75	454	0	ENST00000269305.4:c.97-2_97-1dupAG	p.Leu35ProfsTer10	p.L35Pfs*10	ENST00000269305	NM_001126112.2	32	-/AG																																																																														
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	93	183	0	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719992	18719992	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	11	185	0	ENST00000266497.5:c.3888+1G>A		p.X1296_splice	ENST00000266497		1296																																																																															
CIC	23152	MSKCC	GRCh37	19	42791997	42791997	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	105	577	0	ENST00000575354.2:c.801G>A	p.Trp267Ter	p.W267*	ENST00000575354	NM_015125.3	267	tgG/tgA																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	17	416	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0048804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	166	372	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374244	138374244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	114	302	0	ENST00000289153.2:c.3200A>T	p.Asp1067Val	p.D1067V	ENST00000289153	NM_006219.2	1067	gAc/gTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	105	238	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106159	27106159	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	147	360	0	ENST00000324856.7:c.5770G>T	p.Glu1924Ter	p.E1924*	ENST00000324856	NM_006015.4	1924	Gag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685296	89685297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	151	172	0	ENST00000371953.3:c.193dup	p.Tyr65LeufsTer9	p.Y65Lfs*9	ENST00000371953	NM_000314.4	64	cat/caTt																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111921739	111921746	+	frameshift_variant	Frame_Shift_Del	DEL	AGACCACC	AGACCACC	-			P-0048804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	90	239	0	ENST00000393256.3:c.528_535del	p.Glu176AspfsTer86	p.E176Dfs*86	ENST00000393256	NM_006538.4	176	gaAGACCACCca/gaca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0048806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	323	523	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591126	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0048806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	41	151	0	ENST00000274335.5:c.1718_1719del	p.Leu573GlnfsTer28	p.L573Qfs*28	ENST00000274335		573	cTG/c																																																																														
MGA	23269	MSKCC	GRCh37	15	42041812	42041812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	71	301	0	ENST00000219905.7:c.6007C>T	p.Pro2003Ser	p.P2003S	ENST00000219905	NM_001164273.1	2003	Cct/Tct																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868220	37868220	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	1338	477	0	ENST00000269571.5:c.941T>G	p.Val314Gly	p.V314G	ENST00000269571		314	gTc/gGc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410406	63410406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	63	549	0	ENST00000330258.3:c.2761C>A	p.Leu921Met	p.L921M	ENST00000330258	NM_152424.3	921	Ctg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	11	281	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024458	31024458	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	102	404	7	ENST00000375687.4:c.3943C>T	p.Gln1315Ter	p.Q1315*	ENST00000375687	NM_015338.5	1315	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	300	443	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
RB1	5925	MSKCC	GRCh37	13	49039379	49039379	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	253	451	0	ENST00000267163.4:c.2366del	p.Pro789LeufsTer21	p.P789Lfs*21	ENST00000267163	NM_000321.2	788	agC/ag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827502	72827502	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	280	532	0	ENST00000268489.5:c.9079A>G	p.Thr3027Ala	p.T3027A	ENST00000268489	NM_006885.3	3027	Act/Gct																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868472	117868472	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	236	409	0	ENST00000297338.2:c.870G>C	p.Met290Ile	p.M290I	ENST00000297338	NM_006265.2	290	atG/atC																																																																														
MED12	9968	MSKCC	GRCh37	X	70352332	70352333	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0048809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	397	235	0	ENST00000374080.3:c.4360_4361del	p.Gly1454SerfsTer12	p.G1454Sfs*12	ENST00000374080		1453	aaGGgt/aagt																																																																														
ATRX	546	MSKCC	GRCh37	X	76814234	76814235	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0048809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	258	128	1	ENST00000373344.5:c.6409_6410delinsAA	p.Ala2137Asn	p.A2137N	ENST00000373344	NM_000489.3	2137	GCt/AAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	291	268	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	526	361	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	604	453	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	604	453	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	604	453	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518458	69518458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	365	250	0	ENST00000294312.3:c.187C>T	p.Arg63Cys	p.R63C	ENST00000294312	NM_005117.2	63	Cgt/Tgt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942515	17942515	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149452625		P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	714	670	0	ENST00000458235.1:c.2773C>T	p.Arg925Cys	p.R925C	ENST00000458235	NM_000215.3	925	Cgc/Tgc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487288	56487288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	189	317	0	ENST00000267101.3:c.1435del	p.Glu479LysfsTer4	p.E479Kfs*4	ENST00000267101	NM_001982.3	478	acG/ac																																																																														
VHL	7428	MSKCC	GRCh37	3	10188200	10188200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	93	426	0	ENST00000256474.2:c.343C>A	p.His115Asn	p.H115N	ENST00000256474	NM_000551.3	115	Cac/Aac																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644563	21644563	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	132	470	0	ENST00000421138.2:c.104T>A	p.Leu35His	p.L35H	ENST00000421138		35	cTt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	155	417	13	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024662	31024662	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143770363		P-0048815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	141	583	2	ENST00000375687.4:c.4147G>A	p.Glu1383Lys	p.E1383K	ENST00000375687	NM_015338.5	1383	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	302	680	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208356	5208356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	78	675	0	ENST00000357368.4:c.5534C>T	p.Pro1845Leu	p.P1845L	ENST00000357368	NM_002850.3	1845	cCg/cTg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907037	101907037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	21	302	0	ENST00000374994.4:c.997G>A	p.Asp333Asn	p.D333N	ENST00000374994	NM_004612.2	333	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	266	667	3	ENST00000301067.7:c.15536G>A	p.Arg5179His	p.R5179H	ENST00000301067	NM_003482.3	5179	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0048887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	410	454	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922321	178922321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	242	420	0	ENST00000263967.3:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000263967	NM_006218.2	364	Gga/Aga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948044	178948044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	166	289	0	ENST00000263967.3:c.2816A>G	p.Asp939Gly	p.D939G	ENST00000263967	NM_006218.2	939	gAt/gGt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916248	9916248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	50	412	0	ENST00000330684.3:c.2041del	p.Arg681AspfsTer25	p.R681Dfs*25	ENST00000330684	NM_001134407.1	681	Cga/ga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210698	5210698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	348	572	0	ENST00000357368.4:c.5353A>G	p.Met1785Val	p.M1785V	ENST00000357368	NM_002850.3	1785	Atg/Gtg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948814	17948814	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1558	225	588	0	ENST00000458235.1:c.1628T>C	p.Val543Ala	p.V543A	ENST00000458235	NM_000215.3	543	gTg/gCg																																																																														
KDR	3791	MSKCC	GRCh37	4	55980342	55980342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	117	422	0	ENST00000263923.4:c.749C>A	p.Thr250Asn	p.T250N	ENST00000263923	NM_002253.2	250	aCt/aAt																																																																														
NBN	4683	MSKCC	GRCh37	8	90958466	90958466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	103	450	0	ENST00000265433.3:c.1972G>T	p.Glu658Ter	p.E658*	ENST00000265433	NM_002485.4	658	Gaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449782	8449782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	289	500	0	ENST00000356435.5:c.3931C>T	p.Pro1311Ser	p.P1311S	ENST00000356435		1311	Cct/Tct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0048888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	28	520	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	59	511	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
SDHC	6391	MSKCC	GRCh37	1	161298222	161298222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	15	364	0	ENST00000367975.2:c.114G>A	p.Met38Ile	p.M38I	ENST00000367975	NM_003001.3	38	atG/atA																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804343	46804343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	46	544	0	ENST00000290295.7:c.664C>A	p.Pro222Thr	p.P222T	ENST00000290295	NM_006361.5	222	Ccg/Acg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880138	151880138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	16	420	0	ENST00000262189.6:c.5186C>G	p.Ser1729Cys	p.S1729C	ENST00000262189	NM_170606.2	1729	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	76	456	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127399	55127399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	179	568	0	ENST00000257290.5:c.187G>A	p.Glu63Lys	p.E63K	ENST00000257290	NM_006206.4	63	Gaa/Aaa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873118	134873118	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	59	482	1	ENST00000398015.3:c.1422G>T	p.Lys474Asn	p.K474N	ENST00000398015	NM_004441.4	474	aaG/aaT																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112884199	112884199	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	67	524	0	ENST00000351677.2:c.134T>G	p.Val45Gly	p.V45G	ENST00000351677	NM_002834.3	45	gTt/gGt																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634702	158634702	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	68	341	0	ENST00000263640.3:c.484G>T	p.Val162Leu	p.V162L	ENST00000263640	NM_001105.4	162	Gtg/Ttg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57474001	57474001	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	41	359	0	ENST00000371085.3:c.218G>T	p.Gly73Val	p.G73V	ENST00000371085	NM_000516.4	73	gGc/gTc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29092905	29092905	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	57	513	0	ENST00000328354.6:c.1079A>T	p.Glu360Val	p.E360V	ENST00000328354	NM_007194.3	360	gAg/gTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201698	66201698	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	71	506	0	ENST00000273854.3:c.2804T>A	p.Leu935Gln	p.L935Q	ENST00000273854	NM_004439.5	935	cTg/cAg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026972	6026972	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	74	254	0	ENST00000265849.7:c.1424T>G	p.Val475Gly	p.V475G	ENST00000265849	NM_000535.5	475	gTg/gGg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468125	50468125	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	62	501	0	ENST00000331340.3:c.1360A>T	p.Thr454Ser	p.T454S	ENST00000331340	NM_006060.4	454	Acc/Tcc																																																																														
SMO	6608	MSKCC	GRCh37	7	128851964	128851964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	61	634	0	ENST00000249373.3:c.2036A>G	p.Lys679Arg	p.K679R	ENST00000249373	NM_005631.4	679	aAg/aGg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934382	39934382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	85	346	0	ENST00000378444.4:c.217G>A	p.Asp73Asn	p.D73N	ENST00000378444	NM_001123385.1	73	Gac/Aac																																																																														
BTK	695	MSKCC	GRCh37	X	100630136	100630136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	56	301	0	ENST00000308731.7:c.137G>T	p.Arg46Leu	p.R46L	ENST00000308731	NM_000061.2	46	cGt/cTt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184046	123184046	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	26	239	0	ENST00000218089.9:c.904G>C	p.Ala302Pro	p.A302P	ENST00000218089	NM_001042749.1	302	Gct/Cct																																																																														
MTOR	2475	MSKCC	GRCh37	1	11193214	11193214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	122	606	0	ENST00000361445.4:c.5287G>T	p.Gly1763Cys	p.G1763C	ENST00000361445	NM_004958.3	1763	Ggc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106803	27106804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	104	611	0	ENST00000324856.7:c.6420dup	p.Phe2141LeufsTer9	p.F2141Lfs*9	ENST00000324856	NM_006015.4	2138	-/C																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599271	28599271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1457528646		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	114	630	2	ENST00000253063.3:c.722del	p.Pro241GlnfsTer6	p.P241Qfs*6	ENST00000253063	NM_031459.4	239	agC/ag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	87	328	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310468	65310468	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	41	457	0	ENST00000342505.4:c.2220delC	p.Gly741AlafsTer30	p.G741Afs*30	ENST00000342505	NM_002227.2	740	ccC/cc																																																																														
TET1	80312	MSKCC	GRCh37	10	70404571	70404578	+	frameshift_variant	Frame_Shift_Del	DEL	AACTAAAA	AACTAAAA	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	105	462	1	ENST00000373644.4:c.2086_2093del	p.Thr696Ter	p.T696*	ENST00000373644	NM_030625.2	695	gtAACTAAAAat/gtat																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	63	331	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94911953	94911953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	123	556	1	ENST00000536441.1:c.977G>A	p.Arg326Gln	p.R326Q	ENST00000536441	NM_144665.3	326	cGa/cAa																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981861	101981863	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	89	553	1	ENST00000282441.5:c.286_288del	p.Phe96del	p.F96del	ENST00000282441	NM_001130145.2	94	tcCTTc/tcc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352594	118352594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	98	468	0	ENST00000534358.1:c.3799G>A	p.Val1267Ile	p.V1267I	ENST00000534358	NM_005933.3	1267	Gtc/Atc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445375	49445375	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	151	729	2	ENST00000301067.7:c.2091del	p.Thr698HisfsTer232	p.T698Hfs*232	ENST00000301067	NM_003482.3	697	ccC/cc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860074	57860075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	125	659	0	ENST00000228682.2:c.821dupG	p.Cys275LeufsTer32	p.C275Lfs*32	ENST00000228682	NM_005269.2	272	tgg/tGgg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115398	115115398	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	99	529	0	ENST00000257566.3:c.928C>T	p.Arg310Ter	p.R310*	ENST00000257566	NM_016569.3	310	Cga/Tga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117410	115117410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	43	389	0	ENST00000257566.3:c.764T>A	p.Val255Glu	p.V255E	ENST00000257566	NM_016569.3	255	gTa/gAa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103506135	103506135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	67	299	1	ENST00000355739.4:c.293C>T	p.Ala98Val	p.A98V	ENST00000355739	NM_000123.3	98	gCg/gTg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246532	105246532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	146	567	0	ENST00000349310.3:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000349310	NM_001014432.1	23	cGg/cAg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479831	67479831	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	109	511	1	ENST00000327367.4:c.1138T>C	p.Trp380Arg	p.W380R	ENST00000327367	NM_005902.3	380	Tgg/Cgg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	135	710	1	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993846	72993846	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	99	470	0	ENST00000268489.5:c.199T>C	p.Ser67Pro	p.S67P	ENST00000268489	NM_006885.3	67	Tcg/Ccg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346534	89346534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	125	561	0	ENST00000301030.4:c.6416C>T	p.Pro2139Leu	p.P2139L	ENST00000301030	NM_001256183.1	2139	cCg/cTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348152	89348152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	137	719	3	ENST00000301030.4:c.4798C>T	p.Arg1600Trp	p.R1600W	ENST00000301030	NM_001256183.1	1600	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7572991	7572991	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	98	397	0	ENST00000269305.4:c.1118delA	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	373	aAg/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	140	616	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	131	570	2	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																														
RARA	5914	MSKCC	GRCh37	17	38510560	38510560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	92	368	2	ENST00000254066.5:c.814C>T	p.Arg272Trp	p.R272W	ENST00000254066	NM_000964.3	272	Cgg/Tgg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	144	564	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78866607	78866607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	134	551	0	ENST00000306801.3:c.2180G>A	p.Arg727His	p.R727H	ENST00000306801	NM_020761.2	727	cGt/cAt																																																																														
STK11	6794	MSKCC	GRCh37	19	1226558	1226558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	99	475	2	ENST00000326873.7:c.1214G>T	p.Arg405Met	p.R405M	ENST00000326873	NM_000455.4	405	aGg/aTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5245898	5245898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	115	713	2	ENST00000357368.4:c.877G>A	p.Val293Met	p.V293M	ENST00000357368	NM_002850.3	293	Gtg/Atg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291084	10291084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	122	635	1	ENST00000340748.4:c.387del	p.Lys130AsnfsTer129	p.K130Nfs*129	ENST00000340748		129	ccC/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223481	36223481	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	147	691	1	ENST00000222270.7:c.6034del	p.Ala2012ProfsTer28	p.A2012Pfs*28	ENST00000222270	NM_014727.1	2011	Ggg/gg																																																																														
CASP8	841	MSKCC	GRCh37	2	202136304	202136304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	112	483	0	ENST00000358485.4:c.548T>C	p.Leu183Ser	p.L183S	ENST00000358485	NM_001080125.1	183	tTg/tCg																																																																														
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	126	505	1	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944562	40944562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	89	418	0	ENST00000373198.4:c.1940C>T	p.Ser647Leu	p.S647L	ENST00000373198	NM_133170.3	647	tCg/tTg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484840	57484840	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	116	562	0	ENST00000371085.3:c.820A>G	p.Lys274Glu	p.K274E	ENST00000371085	NM_000516.4	274	Aag/Gag																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62324609	62324609	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139221232		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	124	524	2	ENST00000508582.2:c.3037C>T	p.Arg1013Trp	p.R1013W	ENST00000508582		1013	Cgg/Tgg																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288246	21288246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200712124		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	146	627	0	ENST00000354336.3:c.491G>A	p.Arg164Gln	p.R164Q	ENST00000354336	NM_005207.3	164	cGg/cAg																																																																														
MITF	4286	MSKCC	GRCh37	3	69998221	69998221	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	75	408	0	ENST00000352241.4:c.782T>C	p.Leu261Ser	p.L261S	ENST00000352241	NM_198159.2	261	tTg/tCg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190831	185190831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	112	627	0	ENST00000265026.3:c.1712G>A	p.Gly571Glu	p.G571E	ENST00000265026	NM_004721.4	571	gGa/gAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55604658	55604658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	116	444	0	ENST00000288135.5:c.2866C>T	p.Arg956Trp	p.R956W	ENST00000288135	NM_000222.2	956	Cgg/Tgg																																																																														
KDR	3791	MSKCC	GRCh37	4	55973916	55973916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	79	447	0	ENST00000263923.4:c.1400C>A	p.Ala467Asp	p.A467D	ENST00000263923	NM_002253.2	467	gCc/gAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258980	153258980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	55	314	0	ENST00000281708.4:c.835G>T	p.Asp279Tyr	p.D279Y	ENST00000281708	NM_033632.3	279	Gac/Tac																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	188	545	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564667	86564667	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	119	572	0	ENST00000274376.6:c.402del	p.Pro136LeufsTer38	p.P136Lfs*38	ENST00000274376	NM_002890.2	133	ggT/gg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562993	176562993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	88	382	0	ENST00000439151.2:c.889G>A	p.Gly297Arg	p.G297R	ENST00000439151	NM_022455.4	297	Gga/Aga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638531	176638531	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	121	596	1	ENST00000439151.2:c.3131A>G	p.Asn1044Ser	p.N1044S	ENST00000439151	NM_022455.4	1044	aAc/aGc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038480	180038480	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	77	502	0	ENST00000261937.6:c.3538-1G>A		p.X1180_splice	ENST00000261937	NM_182925.4	1180																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402614	20402614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	27	238	0	ENST00000346618.3:c.151G>A	p.Ala51Thr	p.A51T	ENST00000346618	NM_001949.4	51	Gcc/Acc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170313	32170313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201260854		P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	131	667	0	ENST00000375023.3:c.3295G>A	p.Gly1099Arg	p.G1099R	ENST00000375023	NM_004557.3	1099	Gga/Aga																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	121	632	1	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2951871	2951871	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	138	594	0	ENST00000396946.4:c.3079C>T	p.Arg1027Ter	p.R1027*	ENST00000396946	NM_032415.4	1027	Cga/Tga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729730	41729730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	85	501	1	ENST00000242208.4:c.799G>T	p.Gly267Trp	p.G267W	ENST00000242208	NM_002192.2	267	Ggg/Tgg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509606	106509606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	88	519	0	ENST00000359195.3:c.1600C>T	p.Pro534Ser	p.P534S	ENST00000359195	NM_002649.2	534	Ccc/Tcc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	111	682	0	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																														
LYN	4067	MSKCC	GRCh37	8	56859006	56859006	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	94	448	0	ENST00000519728.1:c.133-1G>T		p.X45_splice	ENST00000519728	NM_002350.3	45																																																																															
LYN	4067	MSKCC	GRCh37	8	56910950	56910950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	119	536	1	ENST00000519728.1:c.1096C>T	p.Arg366Trp	p.R366W	ENST00000519728	NM_002350.3	366	Cgg/Tgg																																																																														
MYC	4609	MSKCC	GRCh37	8	128750639	128750639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	109	519	0	ENST00000377970.2:c.176C>T	p.Ala59Val	p.A59V	ENST00000377970	NM_002467.4	59	gCg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970951	21970951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	107	469	1	ENST00000304494.5:c.407del	p.Gly136AlafsTer10	p.G136Afs*10	ENST00000304494	NM_000077.4	136	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970951	21970951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	107	469	1	ENST00000304494.5:c.407del	p.Gly136AlafsTer10	p.G136Afs*10	ENST00000304494	NM_000077.4	136	gGc/gc																																																																														
SYK	6850	MSKCC	GRCh37	9	93606278	93606278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	139	594	0	ENST00000375746.1:c.98G>T	p.Gly33Val	p.G33V	ENST00000375746	NM_001174167.1	33	gGc/gTc																																																																														
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	125	566	0	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																																																														
ABL1	25	MSKCC	GRCh37	9	133759697	133759697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	114	534	0	ENST00000318560.5:c.2020C>T	p.Arg674Trp	p.R674W	ENST00000318560	NM_005157.4	674	Cgg/Tgg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	53	645	0	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																																																														
ARAF	369	MSKCC	GRCh37	X	47430809	47430809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	55	551	2	ENST00000377045.4:c.1774G>A	p.Asp592Asn	p.D592N	ENST00000377045	NM_001654.4	592	Gat/Aat																																																																														
BTK	695	MSKCC	GRCh37	X	100608266	100608266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	72	640	0	ENST00000308731.7:c.1824A>T	p.Glu608Asp	p.E608D	ENST00000308731	NM_000061.2	608	gaA/gaT																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910372	29910372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	137	635	0	ENST00000376809.5:c.46delG	p.Ala16ProfsTer4	p.A16Pfs*4	ENST00000376809	NM_002116.7	14	tcG/tc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	197	504	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	77	435	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188188	32188188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	68	595	2	ENST00000375023.3:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000375023	NM_004557.3	385	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	97	468	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602836	10602836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	146	724	1	ENST00000171111.5:c.742G>A	p.Ala248Thr	p.A248T	ENST00000171111	NM_203500.1	248	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099063	27099064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	217	598	0	ENST00000324856.7:c.3482dup	p.Pro1162AlafsTer31	p.P1162Afs*31	ENST00000324856	NM_006015.4	1160	tta/ttAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67670733	67670733	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	99	486	0	ENST00000264010.4:c.1979del	p.Asn660ThrfsTer26	p.N660Tfs*26	ENST00000264010	NM_006565.3	660	Aac/ac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628800	187628800	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	118	635	0	ENST00000441802.2:c.2182G>T	p.Glu728Ter	p.E728*	ENST00000441802	NM_005245.3	728	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	152	609	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7976267	7976267	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	104	383	0	ENST00000319144.4:c.1928G>A	p.Arg643Gln	p.R643Q	ENST00000319144	NM_001139.2	643	cGg/cAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715721	30715721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	101	337	0	ENST00000359013.4:c.1454G>T	p.Arg485Leu	p.R485L	ENST00000359013	NM_001024847.2	485	cGc/cTc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354384	354404	+	inframe_deletion	In_Frame_Del	DEL	GCTCCTCCGCGAACTTCTGAG	GCTCCTCCGCGAACTTCTGAG	-			P-0048895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	152	542	0	ENST00000262320.3:c.1154_1174del	p.Pro385_Glu391del	p.P385_E391del	ENST00000262320	NM_003502.3	385	cCTCAGAAGTTCGCGGAGGAGCtc/ctc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647821	3647821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	155	639	1	ENST00000294008.3:c.1343C>T	p.Ser448Phe	p.S448F	ENST00000294008	NM_032444.2	448	tCt/tTt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135796819	135796819	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	60	279	0	ENST00000298552.3:c.668T>A	p.Met223Lys	p.M223K	ENST00000298552	NM_001162426.1	223	aTg/aAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	178	294	0	ENST00000371953.3:c.376G>T	p.Ala126Ser	p.A126S	ENST00000371953	NM_000314.4	126	Gct/Tct																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589599	67589604	+	inframe_deletion	In_Frame_Del	DEL	TCAGTT	TCAGTT	-			P-0048897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	81	252	0	ENST00000274335.5:c.1365_1370del	p.Phe456_Gln457del	p.F456_Q457del	ENST00000274335		454	acTCAGTTt/act																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021708	31021708	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	182	462	0	ENST00000375687.4:c.1709del	p.Pro570ArgfsTer133	p.P570Rfs*133	ENST00000375687	NM_015338.5	569	gtC/gt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888178	81888178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	422	471	0	ENST00000359376.3:c.323C>T	p.Thr108Met	p.T108M	ENST00000359376	NM_002661.3	108	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	1039	574	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629928	187629928	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	450	611	0	ENST00000441802.2:c.1054G>C	p.Val352Leu	p.V352L	ENST00000441802	NM_005245.3	352	Gtc/Ctc																																																																														
ATRX	546	MSKCC	GRCh37	X	76939711	76939711	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	453	557	0	ENST00000373344.5:c.1037del	p.Leu346GlnfsTer7	p.L346Qfs*7	ENST00000373344	NM_000489.3	346	cTa/ca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	52	425	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
B2M	567	MSKCC	GRCh37	15	45007635	45007635	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	82	214	0	ENST00000558401.1:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000558401	NM_004048.2	28	Cag/Tag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	112	569	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139566418	139566418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	191	998	0	ENST00000308874.7:c.677C>T	p.Ser226Leu	p.S226L	ENST00000308874		226	tCg/tTg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625438	69625438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	188	945	0	ENST00000334134.2:c.355G>A	p.Glu119Lys	p.E119K	ENST00000334134	NM_005247.2	119	Gag/Aag																																																																														
FYN	2534	MSKCC	GRCh37	6	112017519	112017519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	108	400	0	ENST00000368678.4:c.994G>A	p.Glu332Lys	p.E332K	ENST00000368678		332	Gag/Aag																																																																														
BIRC3	330	MSKCC	GRCh37	11	102207816	102207816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	46	183	0	ENST00000263464.3:c.1798C>T	p.Arg600Cys	p.R600C	ENST00000263464	NM_001165.4	600	Cgt/Tgt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2199905	2199905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1432	220	1019	0	ENST00000398665.3:c.674C>T	p.Ser225Leu	p.S225L	ENST00000398665	NM_032482.2	225	tCa/tTa																																																																														
RB1	5925	MSKCC	GRCh37	13	49050866	49050866	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	49	271	0	ENST00000267163.4:c.2550G>C	p.Gln850His	p.Q850H	ENST00000267163	NM_000321.2	850	caG/caC																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58678170	58678170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	220	913	2	ENST00000305921.3:c.395C>T	p.Ser132Leu	p.S132L	ENST00000305921	NM_003620.3	132	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151932982	151932982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	23	61	0	ENST00000262189.6:c.2689C>T	p.Arg897Ter	p.R897*	ENST00000262189	NM_170606.2	897	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437616	110437616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	357	876	0	ENST00000375856.3:c.785C>G	p.Ser262Trp	p.S262W	ENST00000375856	NM_003749.2	262	tCg/tGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994234	21994234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	210	846	1	ENST00000361570.3:c.220G>T	p.Glu74Ter	p.E74*	ENST00000361570	NM_058195.3	74	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994234	21994234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	210	846	1	ENST00000361570.3:c.220G>T	p.Glu74Ter	p.E74*	ENST00000361570	NM_058195.3	74	Gag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912895	32912895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	61	277	0	ENST00000380152.3:c.4403C>G	p.Ser1468Cys	p.S1468C	ENST00000380152		1468	tCt/tGt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136124	11136124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1255	176	880	0	ENST00000344626.4:c.3108G>A	p.Met1036Ile	p.M1036I	ENST00000344626	NM_003072.3	1036	atG/atA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690810	89690810	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	26	190	0	ENST00000371953.3:c.217G>C	p.Glu73Gln	p.E73Q	ENST00000371953	NM_000314.4	73	Gaa/Caa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878754	151878754	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	72	428	0	ENST00000262189.6:c.6191C>G	p.Ser2064Ter	p.S2064*	ENST00000262189	NM_170606.2	2064	tCa/tGa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074246	8074246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	86	448	0	ENST00000377482.5:c.413C>T	p.Ser138Phe	p.S138F	ENST00000377482	NM_018948.3	138	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264093	16264093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	216	956	0	ENST00000375759.3:c.10462C>G	p.Pro3488Ala	p.P3488A	ENST00000375759	NM_015001.2	3488	Cca/Gca																																																																														
JUN	3725	MSKCC	GRCh37	1	59247748	59247748	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	116	648	1	ENST00000371222.2:c.995G>T	p.Ter332LeuextTer7	p.*332Lext*7	ENST00000371222	NM_002228.3	332	tGa/tTa																																																																														
PARP1	142	MSKCC	GRCh37	1	226590068	226590068	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	103	587	0	ENST00000366794.5:c.133G>C	p.Asp45His	p.D45H	ENST00000366794	NM_001618.3	45	Gat/Cat																																																																														
WT1	7490	MSKCC	GRCh37	11	32456699	32456699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	155	694	0	ENST00000332351.3:c.193G>C	p.Glu65Gln	p.E65Q	ENST00000332351	NM_024426.4	65	Gag/Cag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246510	46246510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	29	233	0	ENST00000334344.6:c.4604G>A	p.Gly1535Glu	p.G1535E	ENST00000334344	NM_152641.2	1535	gGa/gAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246617	46246617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	35	165	0	ENST00000334344.6:c.4711G>A	p.Glu1571Lys	p.E1571K	ENST00000334344	NM_152641.2	1571	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32936817	32936817	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	40	268	0	ENST00000380152.3:c.7963C>G	p.Gln2655Glu	p.Q2655E	ENST00000380152		2655	Caa/Gaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609546	81609546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	95	444	0	ENST00000298171.2:c.1144G>A	p.Asp382Asn	p.D382N	ENST00000298171	NM_000369.2	382	Gac/Aac																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727545	66727545	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	202	464	0	ENST00000307102.5:c.261C>G	p.His87Gln	p.H87Q	ENST00000307102	NM_002755.3	87	caC/caG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992738	72992738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	167	775	0	ENST00000268489.5:c.1307C>T	p.Ser436Phe	p.S436F	ENST00000268489	NM_006885.3	436	tCt/tTt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118309	17118309	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	157	763	0	ENST00000285071.4:c.1528G>C	p.Glu510Gln	p.E510Q	ENST00000285071	NM_144997.5	510	Gag/Cag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118372	17118372	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	212	971	0	ENST00000285071.4:c.1465G>C	p.Ala489Pro	p.A489P	ENST00000285071	NM_144997.5	489	Gct/Cct																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244517	41244517	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	81	473	0	ENST00000357654.3:c.3031G>T	p.Glu1011Ter	p.E1011*	ENST00000357654	NM_007294.3	1011	Gaa/Taa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602915	10602915	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1486	229	1003	0	ENST00000171111.5:c.663C>G	p.Phe221Leu	p.F221L	ENST00000171111	NM_203500.1	221	ttC/ttG																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11095967	11095967	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1307	173	901	0	ENST00000344626.4:c.241G>C	p.Glu81Gln	p.E81Q	ENST00000344626	NM_003072.3	81	Gag/Cag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350812	15350812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1224	213	838	0	ENST00000263377.2:c.3191C>T	p.Ser1064Phe	p.S1064F	ENST00000263377	NM_058243.2	1064	tCc/tTc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950334	17950334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1489	230	1044	0	ENST00000458235.1:c.1393G>C	p.Asp465His	p.D465H	ENST00000458235	NM_000215.3	465	Gat/Cat																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910623	50910623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1474	209	923	0	ENST00000440232.2:c.1726G>A	p.Glu576Lys	p.E576K	ENST00000440232	NM_002691.3	576	Gag/Aag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52693425	52693425	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1527	224	971	0	ENST00000322088.6:c.76C>G	p.Gln26Glu	p.Q26E	ENST00000322088	NM_014225.5	26	Cag/Gag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225370762	225370762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	61	321	0	ENST00000264414.4:c.1117G>A	p.Asp373Asn	p.D373N	ENST00000264414	NM_003590.4	373	Gac/Aac																																																																														
TOP1	7150	MSKCC	GRCh37	20	39742637	39742637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	67	295	0	ENST00000361337.2:c.1480G>A	p.Glu494Lys	p.E494K	ENST00000361337	NM_003286.2	494	Gag/Aag																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44515827	44515827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	94	490	1	ENST00000291552.4:c.226G>A	p.Glu76Lys	p.E76K	ENST00000291552	NM_006758.2	76	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41531880	41531880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	85	419	0	ENST00000263253.7:c.1592C>T	p.Ser531Leu	p.S531L	ENST00000263253	NM_001429.3	531	tCa/tTa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610710	52610710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	47	236	0	ENST00000394830.3:c.3463G>A	p.Glu1155Lys	p.E1155K	ENST00000394830	NM_018313.4	1155	Gaa/Aaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189526111	189526111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	143	600	0	ENST00000264731.3:c.375G>C	p.Gln125His	p.Q125H	ENST00000264731	NM_003722.4	125	caG/caC																																																																														
TET2	54790	MSKCC	GRCh37	4	106190783	106190783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	85	392	0	ENST00000380013.4:c.4061G>A	p.Arg1354Lys	p.R1354K	ENST00000380013	NM_001127208.2	1354	aGa/aAa																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250578	26250578	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs190976340		P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	128	673	1	ENST00000446824.2:c.256C>T	p.Gln86Ter	p.Q86*	ENST00000446824	NM_021018.2	86	Cag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32164147	32164147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	189	795	0	ENST00000375023.3:c.5252G>T	p.Arg1751Leu	p.R1751L	ENST00000375023	NM_004557.3	1751	cGc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140534506	140534506	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	77	351	0	ENST00000288602.6:c.407C>G	p.Ser136Ter	p.S136*	ENST00000288602	NM_004333.4	136	tCa/tGa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38148067	38148067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	65	611	0	ENST00000317025.8:c.3044G>C	p.Arg1015Thr	p.R1015T	ENST00000317025	NM_023034.1	1015	aGa/aCa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956754	68956754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	98	626	0	ENST00000288368.4:c.872G>A	p.Gly291Glu	p.G291E	ENST00000288368	NM_024870.2	291	gGa/gAa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737407	145737407	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1517	246	1142	0	ENST00000428558.2:c.3280G>T	p.Glu1094Ter	p.E1094*	ENST00000428558	NM_004260.3	1094	Gag/Tag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797253	135797253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	44	211	0	ENST00000298552.3:c.616C>G	p.His206Asp	p.H206D	ENST00000298552	NM_001162426.1	206	Cat/Gat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405630	139405630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1380	272	1176	0	ENST00000277541.6:c.2561C>T	p.Ser854Phe	p.S854F	ENST00000277541	NM_017617.3	854	tCc/tTc																																																																														
BTK	695	MSKCC	GRCh37	X	100608305	100608305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	119	296	0	ENST00000308731.7:c.1785G>T	p.Lys595Asn	p.K595N	ENST00000308731	NM_000061.2	595	aaG/aaT																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186506946	186506946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	32	84	0	ENST00000323963.5:c.1112G>A	p.Gly371Asp	p.G371D	ENST00000323963		371	gGt/gAt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922704	44922704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	27	321	1	ENST00000377967.4:c.1565G>A	p.Gly522Glu	p.G522E	ENST00000377967	NM_021140.2	522	gGa/gAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29663906	29663906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	27	171	0	ENST00000358273.4:c.6401G>A	p.Cys2134Tyr	p.C2134Y	ENST00000358273	NM_001042492.2	2134	tGt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	30	669	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180039600	180039600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	40	633	0	ENST00000261937.6:c.3443T>C	p.Met1148Thr	p.M1148T	ENST00000261937	NM_182925.4	1148	aTg/aCg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0048831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	16	317	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	11	289	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117848	70117848	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0048831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	72	409	0	ENST00000245479.2:c.316A>T	p.Lys106Ter	p.K106*	ENST00000245479	NM_000346.3	106	Aag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	30	425	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775611	9775611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	285	608	1	ENST00000377346.4:c.154C>T	p.Arg52Cys	p.R52C	ENST00000377346	NM_005026.3	52	Cgc/Tgc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557885	21557886	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	248	330	0	ENST00000382592.4:c.1959dup	p.Asn654Ter	p.N654*	ENST00000382592	NM_014572.2	653	-/T																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222753	5222753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	205	484	0	ENST00000357368.4:c.3050G>A	p.Gly1017Asp	p.G1017D	ENST00000357368	NM_002850.3	1017	gGc/gAc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150022994	150023012	+	frameshift_variant	Frame_Shift_Del	DEL	TTTGCAAATGGAAGCAGAG	TTTGCAAATGGAAGCAGAG	-			P-0048836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	353	399	0	ENST00000253339.5:c.251_269del	p.Ser84LeufsTer42	p.S84Lfs*42	ENST00000253339		84	tCTCTGCTTCCATTTGCAAAt/tt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023020	150023020	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	380	446	0	ENST00000253339.5:c.243T>G	p.Ile81Met	p.I81M	ENST00000253339		81	atT/atG																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411479	63411479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	209	697	0	ENST00000330258.3:c.1688C>T	p.Thr563Ile	p.T563I	ENST00000330258	NM_152424.3	563	aCc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	84	313	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946174	13946174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	81	366	0	ENST00000405192.2:c.922C>T	p.Arg308Trp	p.R308W	ENST00000405192	NM_001163147.1	308	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484218	8484218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	83	425	0	ENST00000356435.5:c.3314C>A	p.Pro1105Gln	p.P1105Q	ENST00000356435		1105	cCa/cAa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643297	38643298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0048842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	61	315	0	ENST00000299084.4:c.768_769dup	p.Arg257LeufsTer47	p.R257Lfs*47	ENST00000299084	NM_152594.2	256	cgt/cgTCt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937641	76937641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	38	178	0	ENST00000373344.5:c.3107A>G	p.Lys1036Arg	p.K1036R	ENST00000373344	NM_000489.3	1036	aAg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0048843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	371	677	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0048846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	654	784	5	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	134	304	0	ENST00000349496.5:c.1161T>A	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaA																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39609313	39609313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	71	228	0	ENST00000262039.4:c.1615C>T	p.Arg539Cys	p.R539C	ENST00000262039	NM_002647.2	539	Cgt/Tgt																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023039	33023039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	154	444	1	ENST00000300177.4:c.148C>T	p.Pro50Ser	p.P50S	ENST00000300177	NM_001191322.1	50	Ccc/Tcc																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349086	11349086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	206	429	1	ENST00000332029.2:c.250C>A	p.Leu84Met	p.L84M	ENST00000332029	NM_003745.1	84	Ctg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	188	483	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0048847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	58	194	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100196	27100196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	58	403	0	ENST00000324856.7:c.3992del	p.Gln1331ArgfsTer150	p.Q1331Rfs*150	ENST00000324856	NM_006015.4	1331	cAg/cg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048632	180048632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	236	756	2	ENST00000261937.6:c.1930G>A	p.Ala644Thr	p.A644T	ENST00000261937	NM_182925.4	644	Gcg/Acg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630491	47630491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	283	694	0	ENST00000233146.2:c.161C>T	p.Ala54Val	p.A54V	ENST00000233146	NM_000251.2	54	gCc/gTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	105	165	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	374	358	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243736334	243736334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	178	189	0	ENST00000263826.5:c.713C>T	p.Ser238Leu	p.S238L	ENST00000263826	NM_005465.4	238	tCg/tTg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741406	17741406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	276	566	2	ENST00000250003.3:c.77C>T	p.Thr26Met	p.T26M	ENST00000250003	NM_002478.4	26	aCg/aTg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223211	2223211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	256	491	0	ENST00000326181.6:c.823T>C	p.Tyr275His	p.Y275H	ENST00000326181	NM_032271.2	275	Tac/Cac																																																																														
CDH1	999	MSKCC	GRCh37	16	68845640	68845641	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	403	373	0	ENST00000261769.5:c.887dup	p.Tyr296Ter	p.Y296*	ENST00000261769	NM_004360.3	296	tac/tAac																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661669	227661669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	183	401	0	ENST00000305123.5:c.1786G>T	p.Gly596Trp	p.G596W	ENST00000305123	NM_005544.2	596	Ggg/Tgg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266071	41266097	+	inframe_deletion	In_Frame_Del	DEL	GTCACTGGCAGCAACAGTCTTACCTGG	GTCACTGGCAGCAACAGTCTTACCTGG	-			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	144	128	0	ENST00000349496.5:c.68_94del	p.Ser23_Asp32delinsAsn	p.S23_D32delinsN	ENST00000349496	NM_001904.3	23	aGTCACTGGCAGCAACAGTCTTACCTGGac/aac																																																																														
KIT	3815	MSKCC	GRCh37	4	55602691	55602691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	52	163	0	ENST00000288135.5:c.2512C>A	p.Pro838Thr	p.P838T	ENST00000288135	NM_000222.2	838	Cct/Act																																																																														
IRF4	3662	MSKCC	GRCh37	6	397175	397175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	100	263	0	ENST00000380956.4:c.560A>G	p.His187Arg	p.H187R	ENST00000380956	NM_001195286.1	187	cAc/cGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735466	40735466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182388300		P-0048850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	129	524	0	ENST00000373198.4:c.3407G>A	p.Arg1136His	p.R1136H	ENST00000373198	NM_133170.3	1136	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	48	137	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0048850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	185	438	0	ENST00000269305.4:c.672+1G>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872935	136872935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	116	311	0	ENST00000241393.3:c.563G>A	p.Arg188His	p.R188H	ENST00000241393	NM_003467.2	188	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112170676	112170676	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	96	257	0	ENST00000257430.4:c.1773del	p.Leu592TyrfsTer18	p.L592Yfs*18	ENST00000257430	NM_000038.5	591	gCc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0048851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	159	316	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
CBL	867	MSKCC	GRCh37	11	119142578	119142578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	44	223	0	ENST00000264033.4:c.577G>T	p.Ala193Ser	p.A193S	ENST00000264033	NM_005188.3	193	Gct/Tct																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100799	8100799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	51	452	0	ENST00000346208.3:c.773G>C	p.Ser258Thr	p.S258T	ENST00000346208		258	aGc/aCc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380348	14380349	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0048851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	297	211	2	ENST00000256196.4:c.68_69delinsTT	p.Gly23Val	p.G23V	ENST00000256196		23	gGC/gTT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984513	72984513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	157	596	0	ENST00000268489.5:c.3071C>G	p.Ala1024Gly	p.A1024G	ENST00000268489	NM_006885.3	1024	gCc/gGc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615817	1615827	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCCCTGCAAC	AGCCCTGCAAC	-			P-0048851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	71	362	0	ENST00000344749.5:c.1451-7_1454del		p.X484_splice	ENST00000344749	NM_001136139.2	484																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223494	53223494	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	242	582	0	ENST00000375401.3:c.3865C>T	p.Gln1289Ter	p.Q1289*	ENST00000375401	NM_004187.3	1289	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	195	463	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0048852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	114	334	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0048852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	86	215	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0048852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	145	298	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864658	68864658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	102	290	1	ENST00000288368.4:c.29G>A	p.Arg10His	p.R10H	ENST00000288368	NM_024870.2	10	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720728	89720741	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTCTATGTGATC	AAGTCTATGTGATC	-			P-0048852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	89	128	0	ENST00000371953.3:c.882_895del	p.Ser294ArgfsTer4	p.S294Rfs*4	ENST00000371953	NM_000314.4	293	ggAAGTCTATGTGATCaa/ggaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151843727	151843727	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	238	306	0	ENST00000262189.6:c.13988T>G	p.Leu4663Arg	p.L4663R	ENST00000262189	NM_170606.2	4663	cTg/cGg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912354	32912354	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	62	244	0	ENST00000380152.3:c.3862A>T	p.Asn1288Tyr	p.N1288Y	ENST00000380152		1288	Aat/Tat																																																																														
KIT	3815	MSKCC	GRCh37	4	55593637	55593660	+	protein_altering_variant	In_Frame_Del	DEL	ATGTTTACATAGACCCAACACAAC	ATGTTTACATAGACCCAACACAAC	GTG			P-0048853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	74	310	1	ENST00000288135.5:c.1703_1726delinsGTG	p.Tyr568_Leu576delinsCysVal	p.Y568_L576delinsCV	ENST00000288135	NM_000222.2	568	tATGTTTACATAGACCCAACACAACtt/tGTGtt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0012045-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			450	196	589	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981851	201981852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012045-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			614	297	767	1	ENST00000359651.3:c.567dupC	p.Ser190LeufsTer6	p.S190Lfs*6	ENST00000359651		188	gcc/gCcc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982433	25982433	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012045-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			181	329	345	0	ENST00000435504.4:c.857T>C	p.Leu286Pro	p.L286P	ENST00000435504		286	cTg/cCg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391799	139391799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			701	73	663	0	ENST00000277541.6:c.6392delG	p.Gly2131AlafsTer117	p.G2131Afs*117	ENST00000277541	NM_017617.3	2131	gGc/gc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937984	76937984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	62	293	1	ENST00000373344.5:c.2764G>A	p.Asp922Asn	p.D922N	ENST00000373344	NM_000489.3	922	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100935	27100945	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCAGCCCAG	CCCCAGCCCAG	-			P-0045906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			616	61	548	0	ENST00000324856.7:c.4225_4235del	p.Gln1409CysfsTer32	p.Q1409Cfs*32	ENST00000324856	NM_006015.4	1406	cCCCCAGCCCAG/c																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307250	118307250	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045906-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	33	193	0	ENST00000534358.1:c.23G>C	p.Arg8Pro	p.R8P	ENST00000534358	NM_005933.3	8	cGc/cCc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	48	574	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	330	919	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	197	652	1	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	211	649	0	ENST00000371085.3:c.602G>T	p.Arg201Leu	p.R201L	ENST00000371085	NM_000516.4	201	cGt/cTt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56801431	56801431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	82	639	1	ENST00000337432.4:c.935G>A	p.Arg312Gln	p.R312Q	ENST00000337432	NM_058216.2	312	cGg/cAg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978470	70978470	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0048596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	62	476	0	ENST00000276594.2:c.1183G>T	p.Glu395Ter	p.E395*	ENST00000276594	NM_024504.3	395	Gag/Tag																																																																														
CBL	867	MSKCC	GRCh37	11	119144711	119144711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	67	571	0	ENST00000264033.4:c.724G>C	p.Asp242His	p.D242H	ENST00000264033	NM_005188.3	242	Gac/Cac																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918980	50918980	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0048596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	218	655	0	ENST00000440232.2:c.2718-1G>C		p.X906_splice	ENST00000440232	NM_002691.3	906																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713847	30714869	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAACCTGCTGCCTGTGTGACTTTGGGCTTTCCCTGCGTCTGGACCCTACTCTGTCTGTGGATGACCTGGCTAACAGTGGGCAGGTAAGTTAGAGCTAGTGCTAGATCCCCTTTACCTTGAGCCTGGCCTCACCCTACCTCTTGATCCATATCTCCTGGCTCTTATCTCAAACAGCCCTGTACTCTGGACACTGGTCTAGGGAATCTAGCCAAAGTATGGAGTCTGCCTTGAGCATACTCTGCTCTGTCCTGCCTGAGCATTTTTGCTAATGGACAGCATTTCTCCTCCTATCTTCAAATCCTTCCCAGTTCAGCACATTTTTTCCTCCTGGATCAATCCTCATTTCTCTTCCAGCAAATGTTTTTTCTTTGTTTCAAGCACTGTTAGTACTTTACCTCTATTTTTTCCCTCTCTTATGGTTGTACTCAGTCCTTTCTGCTCTATACTAGCTGTAGTTGTGTTGGTTTCTTTGTATTAAAAGCATCGTGGAAGGCAATCTCCCTGAAGTCCAAATCTACATCCACATGGTCACCCAAGATATGTAGCACAATGCCTTGAACATTGAAAGTAAAATAAGTACTTGTCGACTGAGTGAGCACTTCCACTCTTGAAGCACTCTCACAGATTAAAATGGAAATGTTTTTGGCTAAGAAACTATTGGAAGGTGATTGGAAATCACCACAACATCCCTTATAAATGATGAGCCCAGTGTTTTCACACAGTGGAGTCCATGGAGAGCAGCACTGTCTTCTTTAGCCAGGTGGCAGGACACACTTTGAAGCACTCGGTTACTGCTCAGTCAGCCCTGTGTCCATGGCAGCGCACGCAGTGTTGAGGTAAACATCGAAATATGGACAGACTAATGTGCCAGAGTAATGAGCCATGCAATGACCTCTTGAGAAGAAAAAAACTCTCTAATACATGCCAATAAGAAACATTCCTTGGAATGATAATATCAACTCACTTGGCTTCCCTAGATCCTTGGGAAGGTAGGACTTTATTGTTATTTAGTCAGTTTATACA	TAACCTGCTGCCTGTGTGACTTTGGGCTTTCCCTGCGTCTGGACCCTACTCTGTCTGTGGATGACCTGGCTAACAGTGGGCAGGTAAGTTAGAGCTAGTGCTAGATCCCCTTTACCTTGAGCCTGGCCTCACCCTACCTCTTGATCCATATCTCCTGGCTCTTATCTCAAACAGCCCTGTACTCTGGACACTGGTCTAGGGAATCTAGCCAAAGTATGGAGTCTGCCTTGAGCATACTCTGCTCTGTCCTGCCTGAGCATTTTTGCTAATGGACAGCATTTCTCCTCCTATCTTCAAATCCTTCCCAGTTCAGCACATTTTTTCCTCCTGGATCAATCCTCATTTCTCTTCCAGCAAATGTTTTTTCTTTGTTTCAAGCACTGTTAGTACTTTACCTCTATTTTTTCCCTCTCTTATGGTTGTACTCAGTCCTTTCTGCTCTATACTAGCTGTAGTTGTGTTGGTTTCTTTGTATTAAAAGCATCGTGGAAGGCAATCTCCCTGAAGTCCAAATCTACATCCACATGGTCACCCAAGATATGTAGCACAATGCCTTGAACATTGAAAGTAAAATAAGTACTTGTCGACTGAGTGAGCACTTCCACTCTTGAAGCACTCTCACAGATTAAAATGGAAATGTTTTTGGCTAAGAAACTATTGGAAGGTGATTGGAAATCACCACAACATCCCTTATAAATGATGAGCCCAGTGTTTTCACACAGTGGAGTCCATGGAGAGCAGCACTGTCTTCTTTAGCCAGGTGGCAGGACACACTTTGAAGCACTCGGTTACTGCTCAGTCAGCCCTGTGTCCATGGCAGCGCACGCAGTGTTGAGGTAAACATCGAAATATGGACAGACTAATGTGCCAGAGTAATGAGCCATGCAATGACCTCTTGAGAAGAAAAAAACTCTCTAATACATGCCAATAAGAAACATTCCTTGGAATGATAATATCAACTCACTTGGCTTCCCTAGATCCTTGGGAAGGTAGGACTTTATTGTTATTTAGTCAGTTTATACA	-			P-0048596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	129	890	0	ENST00000359013.4:c.1249_1330-726del		p.X417_splice	ENST00000359013	NM_001024847.2	417																																																																															
DAXX	1616	MSKCC	GRCh37	6	33287989	33287989	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	205	743	0	ENST00000374542.5:c.1264A>G	p.Met422Val	p.M422V	ENST00000374542	NM_001141970.1	422	Atg/Gtg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5123085	5123122	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TTTCACATACATTGAGAAGAGTAAAAGTCCACCAGCGG	TTTCACATACATTGAGAAGAGTAAAAGTCCACCAGCGG	-			P-0048596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	39	612	0	ENST00000381652.3:c.3142_3177+2del		p.X1048_splice	ENST00000381652	NM_004972.3	1048																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891144	101891144	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	40	479	0	ENST00000374994.4:c.105G>C	p.Gln35His	p.Q35H	ENST00000374994	NM_004612.2	35	caG/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	399	564	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244586	46244586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	207	479	0	ENST00000334344.6:c.2680C>T	p.Gln894Ter	p.Q894*	ENST00000334344	NM_152641.2	894	Cag/Tag																																																																														
TET1	80312	MSKCC	GRCh37	10	70360756	70360756	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	33	229	0	ENST00000373644.4:c.1933A>G	p.Arg645Gly	p.R645G	ENST00000373644	NM_030625.2	645	Agg/Ggg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231780	36231780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	151	532	1	ENST00000300305.3:c.604G>A	p.Glu202Lys	p.E202K	ENST00000300305		202	Gaa/Aaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25991625	25991626	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0048708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	61	176	0	ENST00000435504.4:c.616_617del	p.Val206ThrfsTer13	p.V206Tfs*13	ENST00000435504		206	GTa/a																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589662	69589662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	26	154	0	ENST00000168712.1:c.191C>T	p.Pro64Leu	p.P64L	ENST00000168712	NM_002007.2	64	cCc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	177	286	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	245	501	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729613	41729613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	133	489	0	ENST00000242208.4:c.916C>T	p.Arg306Cys	p.R306C	ENST00000242208	NM_002192.2	306	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578206	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	468	714	0	ENST00000269305.4:c.642_643del	p.His214GlnfsTer7	p.H214Qfs*7	ENST00000269305	NM_001126112.2	214	caTAgt/cagt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477139	67477139	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	296	593	0	ENST00000327367.4:c.946C>T	p.Gln316Ter	p.Q316*	ENST00000327367	NM_005902.3	316	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434055	49434055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	45	755	0	ENST00000301067.7:c.7498G>A	p.Ala2500Thr	p.A2500T	ENST00000301067	NM_003482.3	2500	Gcg/Acg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024372	16024372	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	124	286	0	ENST00000268712.3:c.1846G>T	p.Glu616Ter	p.E616*	ENST00000268712	NM_006311.3	616	Gaa/Taa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873041	134873041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	71	617	0	ENST00000398015.3:c.1345A>G	p.Ser449Gly	p.S449G	ENST00000398015	NM_004441.4	449	Agc/Ggc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683327	182683327	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0048714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	113	406	0	ENST00000292782.4:c.218A>C	p.Lys73Thr	p.K73T	ENST00000292782	NM_020640.2	73	aAa/aCa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36208923	36208925	+	start_lost,inframe_deletion	Translation_Start_Site	DEL	GGC	GGC	-			P-0048715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	10	26	0	ENST00000222270.7:c.14_16del	p.Ala5del	p.A5del	ENST00000222270	NM_014727.1	1	atGGCg/atg																																																																														
CDK6	1021	MSKCC	GRCh37	7	92300822	92300822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	37	429	0	ENST00000265734.4:c.565G>A	p.Glu189Lys	p.E189K	ENST00000265734	NM_001259.6	189	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578374	7578374	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	570	584	2	ENST00000269305.4:c.556del	p.Asp186MetfsTer61	p.D186Mfs*61	ENST00000269305	NM_001126112.2	186	Gat/at																																																																														
PMS1	5378	MSKCC	GRCh37	2	190718665	190718665	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0048715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	204	263	0	ENST00000441310.2:c.823T>G	p.Leu275Val	p.L275V	ENST00000441310	NM_000534.4	275	Tta/Gta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	70	327	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0048716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	158	766	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
ATM	472	MSKCC	GRCh37	11	108151863	108151863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	94	421	0	ENST00000278616.4:c.3544G>C	p.Glu1182Gln	p.E1182Q	ENST00000278616	NM_000051.3	1182	Gag/Cag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830754	3830754	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	77	455	0	ENST00000262367.5:c.1802G>C	p.Arg601Pro	p.R601P	ENST00000262367	NM_004380.2	601	cGg/cCg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807891	1807891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	897	859	0	ENST00000260795.2:c.1950G>C	p.Lys650Asn	p.K650N	ENST00000260795		650	aaG/aaC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971091	21971100	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTCCCGG	GCCCTCCCGG	-			P-0048716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	70	521	0	ENST00000304494.5:c.258_267del	p.Arg87SerfsTer56	p.R87Sfs*56	ENST00000304494	NM_000077.4	86	gcCCGGGAGGGC/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971091	21971100	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTCCCGG	GCCCTCCCGG	-			P-0048716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	70	521	0	ENST00000304494.5:c.258_267del	p.Arg87SerfsTer56	p.R87Sfs*56	ENST00000304494	NM_000077.4	86	gcCCGGGAGGGC/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971091	21971100	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTCCCGG	GCCCTCCCGG	-			P-0048716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	70	521	0	ENST00000304494.5:c.258_267del	p.Arg87SerfsTer56	p.R87Sfs*56	ENST00000304494	NM_000077.4	86	gcCCGGGAGGGC/gc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891190	101891190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	70	378	0	ENST00000374994.4:c.151G>A	p.Asp51Asn	p.D51N	ENST00000374994	NM_004612.2	51	Gat/Aat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	131	359	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	717	565	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	147	412	0	ENST00000263967.3:c.1636C>G	p.Gln546Glu	p.Q546E	ENST00000263967	NM_006218.2	546	Cag/Gag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467428	25467428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1387	256	499	1	ENST00000264709.3:c.1648G>A	p.Gly550Arg	p.G550R	ENST00000264709	NM_175629.2	550	Gga/Aga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725590	117725590	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0048755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	158	293	1	ENST00000368508.3:c.291A>T	p.Glu97Asp	p.E97D	ENST00000368508	NM_002944.2	97	gaA/gaT																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349955	15349955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	241	562	0	ENST00000263377.2:c.3697G>A	p.Glu1233Lys	p.E1233K	ENST00000263377	NM_058243.2	1233	Gag/Aag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703631	47703631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	41	427	0	ENST00000233146.2:c.2131C>T	p.Arg711Ter	p.R711*	ENST00000233146	NM_000251.2	711	Cga/Tga																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796980	78796980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	69	506	0	ENST00000306801.3:c.1093G>A	p.Val365Ile	p.V365I	ENST00000306801	NM_020761.2	365	Gtc/Atc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	40	396	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	8	196	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	71	739	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652158	36652158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	90	767	0	ENST00000244741.5:c.280C>T	p.Arg94Trp	p.R94W	ENST00000244741	NM_000389.4	94	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	78	689	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721157	176721157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	60	410	0	ENST00000439151.2:c.6788C>T	p.Ser2263Leu	p.S2263L	ENST00000439151	NM_022455.4	2263	tCg/tTg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25497950	25497950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	65	627	0	ENST00000264709.3:c.499C>T	p.Arg167Trp	p.R167W	ENST00000264709	NM_175629.2	167	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	65	634	3	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	50	438	2	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	27	546	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108205807	108205807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	22	322	0	ENST00000278616.4:c.8122G>A	p.Asp2708Asn	p.D2708N	ENST00000278616	NM_000051.3	2708	Gat/Aat																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30264357	30264357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	28	282	1	ENST00000322652.5:c.92T>C	p.Val31Ala	p.V31A	ENST00000322652	NM_015355.2	31	gTg/gCg																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006224	22006224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	80	798	1	ENST00000276925.6:c.179G>A	p.Arg60His	p.R60H	ENST00000276925	NM_004936.3	60	cGc/cAc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046263	128046263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	42	391	1	ENST00000285398.2:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000285398	NM_000122.1	334	Cgt/Tgt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371649	89371649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	85	713	0	ENST00000301030.4:c.191C>T	p.Ala64Val	p.A64V	ENST00000301030	NM_001256183.1	64	gCg/gTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248450	212248450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	39	328	0	ENST00000342788.4:c.3817C>T	p.Arg1273Trp	p.R1273W	ENST00000342788	NM_005235.2	1273	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434142	49434142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	85	757	0	ENST00000301067.7:c.7411C>T	p.Arg2471Ter	p.R2471*	ENST00000301067	NM_003482.3	2471	Cga/Tga																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736388	85736388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	24	314	0	ENST00000370580.1:c.259C>T	p.Arg87Trp	p.R87W	ENST00000370580	NM_003921.4	87	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435153	56435153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	62	734	2	ENST00000407977.2:c.1984G>A	p.Glu662Lys	p.E662K	ENST00000407977		662	Gag/Aag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786013	135786013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	71	657	0	ENST00000298552.3:c.1208C>T	p.Ser403Leu	p.S403L	ENST00000298552	NM_001162426.1	403	tCg/tTg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78681713	78681713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	61	539	0	ENST00000306801.3:c.421G>A	p.Ala141Thr	p.A141T	ENST00000306801	NM_020761.2	141	Gcc/Acc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528505	157528505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	48	538	0	ENST00000346085.5:c.6230C>T	p.Ser2077Leu	p.S2077L	ENST00000346085	NM_020732.3	2077	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151856048	151856048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	39	389	0	ENST00000262189.6:c.11570C>T	p.Thr3857Met	p.T3857M	ENST00000262189	NM_170606.2	3857	aCg/aTg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533547	63533547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	87	839	0	ENST00000307078.5:c.1607C>T	p.Thr536Met	p.T536M	ENST00000307078	NM_004655.3	536	aCg/aTg																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612836	228612836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	74	813	0	ENST00000366696.1:c.191G>A	p.Arg64His	p.R64H	ENST00000366696	NM_003493.2	64	cGc/cAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15935762	15935762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	37	376	2	ENST00000268712.3:c.7171C>T	p.Arg2391Trp	p.R2391W	ENST00000268712	NM_006311.3	2391	Cgg/Tgg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950316	17950316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	63	774	1	ENST00000458235.1:c.1411C>T	p.Leu471Phe	p.L471F	ENST00000458235	NM_000215.3	471	Ctc/Ttc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976216	18976216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	60	957	1	ENST00000262803.5:c.2976G>A	p.Met992Ile	p.M992I	ENST00000262803	NM_002911.3	992	atG/atA																																																																														
MSH6	2956	MSKCC	GRCh37	2	48032074	48032074	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	38	274	0	ENST00000234420.5:c.3464A>C	p.Gln1155Pro	p.Q1155P	ENST00000234420	NM_000179.2	1155	cAg/cCg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902875	1902875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	42	454	0	ENST00000382891.5:c.494C>T	p.Ala165Val	p.A165V	ENST00000382891	NM_133335.3	165	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540190	187540190	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199785192		P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	39	394	0	ENST00000441802.2:c.7550C>T	p.Thr2517Met	p.T2517M	ENST00000441802	NM_005245.3	2517	aCg/aTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31485055	31485055	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	14	254	0	ENST00000344624.3:c.1929A>C	p.Lys643Asn	p.K643N	ENST00000344624		643	aaA/aaC																																																																														
NSD1	64324	MSKCC	GRCh37	5	176678803	176678803	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	57	393	0	ENST00000439151.2:c.4714G>T	p.Gly1572Ter	p.G1572*	ENST00000439151	NM_022455.4	1572	Gga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	88	673	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0048758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	45	396	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	35	166	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0048758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	52	452	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352670	118352670	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	58	479	0	ENST00000534358.1:c.3876del	p.Lys1293SerfsTer63	p.K1293Sfs*63	ENST00000534358	NM_005933.3	1292	aGg/ag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100569	157100569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	43	434	1	ENST00000346085.5:c.1509del	p.Gly504AlafsTer19	p.G504Afs*19	ENST00000346085	NM_020732.3	502	agC/ag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	161	297	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	37	586	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	308	577	0	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg																																																																														
MDM4	4194	MSKCC	GRCh37	1	204495530	204495530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	107	270	0	ENST00000367182.3:c.121G>T	p.Gly41Cys	p.G41C	ENST00000367182	NM_001278516.1	41	Ggt/Tgt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240816	53240816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	26	236	0	ENST00000375401.3:c.1264G>C	p.Glu422Gln	p.E422Q	ENST00000375401	NM_004187.3	422	Gag/Cag																																																																														
PARK2	0	MSKCC	GRCh37	6	161781201	161781201	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55830907		P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	61	398	1	ENST00000366898.1:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000366898	NM_004562.2	402	Cgt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16265348	16265348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	134	470	0	ENST00000375759.3:c.10840G>A	p.Val3614Ile	p.V3614I	ENST00000375759	NM_015001.2	3614	Gtt/Att																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	66	258	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246137	46246137	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	65	259	0	ENST00000334344.6:c.4231C>T	p.Gln1411Ter	p.Q1411*	ENST00000334344	NM_152641.2	1411	Caa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108178681	108178681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	35	161	0	ENST00000278616.4:c.5732C>T	p.Ala1911Val	p.A1911V	ENST00000278616	NM_000051.3	1911	gCt/gTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9547022	9547022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	40	189	0	ENST00000353224.5:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000353224	NM_177990.2	334	Gat/Aat																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78866552	78866552	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	105	482	1	ENST00000306801.3:c.2125C>T	p.Arg709Ter	p.R709*	ENST00000306801	NM_020761.2	709	Cga/Tga																																																																														
PARK2	0	MSKCC	GRCh37	6	162683659	162683659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	96	427	1	ENST00000366898.1:c.310C>T	p.Arg104Trp	p.R104W	ENST00000366898	NM_004562.2	104	Cgg/Tgg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55153709	55153709	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	102	386	0	ENST00000257290.5:c.2674+1G>A		p.X892_splice	ENST00000257290	NM_006206.4	892																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	78	331	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	103	595	1	ENST00000269305.4:c.328C>T	p.Arg110Cys	p.R110C	ENST00000269305	NM_001126112.2	110	Cgt/Tgt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455090	50455090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	44	257	0	ENST00000331340.3:c.637C>T	p.Arg213Ter	p.R213*	ENST00000331340	NM_006060.4	213	Cga/Tga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143985	11143985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	133	444	0	ENST00000344626.4:c.3566G>A	p.Arg1189Gln	p.R1189Q	ENST00000344626	NM_003072.3	1189	cGa/cAa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	122	570	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027998	48027998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	56	226	0	ENST00000234420.5:c.2876G>A	p.Arg959His	p.R959H	ENST00000234420	NM_000179.2	959	cGc/cAc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041527	14041527	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	44	290	0	ENST00000311895.7:c.2074C>T	p.Arg692Ter	p.R692*	ENST00000311895	NM_005236.2	692	Cga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950622	38950622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	60	236	1	ENST00000357387.3:c.3328C>T	p.Arg1110Cys	p.R1110C	ENST00000357387	NM_152756.3	1110	Cgt/Tgt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508793	106508793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	74	368	1	ENST00000359195.3:c.787G>A	p.Glu263Lys	p.E263K	ENST00000359195	NM_002649.2	263	Gaa/Aaa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	92	304	0	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858492	27858492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	82	382	0	ENST00000359303.2:c.79C>T	p.Arg27Cys	p.R27C	ENST00000359303	NM_003535.2	27	Cgc/Tgc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729613	41729613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	88	432	0	ENST00000242208.4:c.916C>T	p.Arg306Cys	p.R306C	ENST00000242208	NM_002192.2	306	Cgc/Tgc																																																																														
FANCC	2176	MSKCC	GRCh37	9	98011564	98011564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	66	255	0	ENST00000289081.3:c.10G>T	p.Asp4Tyr	p.D4Y	ENST00000289081	NM_000136.2	4	Gat/Tat																																																																														
RET	5979	MSKCC	GRCh37	10	43622039	43622039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	56	269	0	ENST00000355710.3:c.3056C>T	p.Ala1019Val	p.A1019V	ENST00000355710	NM_020975.4	1019	gCg/gTg																																																																														
ATM	472	MSKCC	GRCh37	11	108205756	108205756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	46	200	1	ENST00000278616.4:c.8071C>T	p.Arg2691Cys	p.R2691C	ENST00000278616	NM_000051.3	2691	Cgc/Tgc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049724	16049724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	33	326	0	ENST00000268712.3:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000268712	NM_006311.3	350	Cga/Tga																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	21	341	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523708	148523708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	42	192	0	ENST00000320356.2:c.745G>A	p.Glu249Lys	p.E249K	ENST00000320356	NM_004456.4	249	Gaa/Aaa																																																																														
POLE	5426	MSKCC	GRCh37	12	133249847	133249847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	61	322	0	ENST00000320574.5:c.1376C>T	p.Ser459Phe	p.S459F	ENST00000320574	NM_006231.2	459	tCt/tTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623625	28623625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	34	323	0	ENST00000241453.7:c.932G>A	p.Arg311Gln	p.R311Q	ENST00000241453	NM_004119.2	311	cGg/cAg																																																																														
KIT	3815	MSKCC	GRCh37	4	55598084	55598084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	68	297	0	ENST00000288135.5:c.2281G>A	p.Glu761Lys	p.E761K	ENST00000288135	NM_000222.2	761	Gag/Aag																																																																														
EZH2	2146	MSKCC	GRCh37	7	148513849	148513849	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	76	305	0	ENST00000320356.2:c.1432G>T	p.Glu478Ter	p.E478*	ENST00000320356	NM_004456.4	478	Gaa/Taa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467500	66467500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	55	226	0	ENST00000273854.3:c.769G>A	p.Glu257Lys	p.E257K	ENST00000273854	NM_004439.5	257	Gaa/Aaa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65301111	65301111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	39	194	0	ENST00000342505.4:c.3337C>T	p.Arg1113Cys	p.R1113C	ENST00000342505	NM_002227.2	1113	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542861	187542861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	52	240	0	ENST00000441802.2:c.4879C>T	p.Arg1627Ter	p.R1627*	ENST00000441802	NM_005245.3	1627	Cga/Tga																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72866457	72866457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	51	243	0	ENST00000325599.8:c.806G>A	p.Arg269His	p.R269H	ENST00000325599	NM_018130.2	269	cGt/cAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436128	56436128	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	99	441	1	ENST00000407977.2:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000407977		337	Cga/Tga																																																																														
PAK7	0	MSKCC	GRCh37	20	9560970	9560970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	62	263	0	ENST00000353224.5:c.812C>T	p.Ser271Leu	p.S271L	ENST00000353224	NM_177990.2	271	tCg/tTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356152	66356152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	77	301	0	ENST00000273854.3:c.1345G>A	p.Asp449Asn	p.D449N	ENST00000273854	NM_004439.5	449	Gac/Aac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170811	11170811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	139	598	0	ENST00000344626.4:c.4859C>T	p.Ser1620Phe	p.S1620F	ENST00000344626	NM_003072.3	1620	tCc/tTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521544	8521544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	56	259	1	ENST00000356435.5:c.694C>T	p.Arg232Cys	p.R232C	ENST00000356435		232	Cgc/Tgc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082313	16082314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	110	775	2	ENST00000281043.3:c.134dupC	p.Glu47GlyfsTer8	p.E47Gfs*8	ENST00000281043	NM_005378.4	43	acc/aCcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539690	187539690	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	72	258	0	ENST00000441802.2:c.8050G>T	p.Glu2684Ter	p.E2684*	ENST00000441802	NM_005245.3	2684	Gaa/Taa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131953874	131953874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	40	236	0	ENST00000265335.6:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000265335		1093	Cga/Tga																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984024	7984024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	51	264	0	ENST00000319144.4:c.602G>A	p.Arg201His	p.R201H	ENST00000319144	NM_001139.2	201	cGc/cAc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225379426	225379426	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	91	317	0	ENST00000264414.4:c.442C>T	p.Arg148Ter	p.R148*	ENST00000264414	NM_003590.4	148	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128185	112128185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	81	233	0	ENST00000257430.4:c.688C>T	p.Arg230Cys	p.R230C	ENST00000257430	NM_000038.5	230	Cgt/Tgt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687431	117687431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	63	203	0	ENST00000368508.3:c.2620G>T	p.Glu874Ter	p.E874*	ENST00000368508	NM_002944.2	874	Gaa/Taa																																																																														
SYK	6850	MSKCC	GRCh37	9	93650096	93650096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	79	392	0	ENST00000375746.1:c.1647C>A	p.Phe549Leu	p.F549L	ENST00000375746	NM_001174167.1	549	ttC/ttA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650568	18650568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	69	312	0	ENST00000266497.5:c.2779C>T	p.Arg927Cys	p.R927C	ENST00000266497		927	Cgt/Tgt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864193	57864193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	121	496	3	ENST00000228682.2:c.1670G>A	p.Arg557His	p.R557H	ENST00000228682	NM_005269.2	557	cGc/cAc																																																																														
CASP8	841	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	27	294	0	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027958	48027958	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	42	203	0	ENST00000234420.5:c.2836G>T	p.Glu946Ter	p.E946*	ENST00000234420	NM_000179.2	946	Gaa/Taa																																																																														
CASP8	841	MSKCC	GRCh37	2	202149880	202149880	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	105	342	0	ENST00000358485.4:c.1321G>T	p.Glu441Ter	p.E441*	ENST00000358485	NM_001080125.1	441	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916669	178916669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	60	210	0	ENST00000263967.3:c.56G>T	p.Arg19Ile	p.R19I	ENST00000263967	NM_006218.2	19	aGa/aTa																																																																														
APC	324	MSKCC	GRCh37	5	112176686	112176686	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	42	149	0	ENST00000257430.4:c.5395T>G	p.Leu1799Val	p.L1799V	ENST00000257430	NM_000038.5	1799	Tta/Gta																																																																														
RFWD2	0	MSKCC	GRCh37	1	175956135	175956135	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	67	250	0	ENST00000367669.3:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000367669	NM_022457.5	693	Gaa/Taa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524603	176524603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	151	688	1	ENST00000292408.4:c.2335G>A	p.Asp779Asn	p.D779N	ENST00000292408	NM_213647.1	779	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1260648	1260648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	118	520	1	ENST00000310581.5:c.2911C>T	p.Arg971Cys	p.R971C	ENST00000310581	NM_198253.2	971	Cgt/Tgt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940241	71940241	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113909227		P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	127	548	3	ENST00000298229.2:c.626G>A	p.Arg209His	p.R209H	ENST00000298229	NM_001567.3	209	cGt/cAt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103520549	103520549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28929496		P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	37	214	0	ENST00000355739.4:c.2620G>A	p.Ala874Thr	p.A874T	ENST00000355739	NM_000123.3	874	Gcc/Acc																																																																														
NF2	4771	MSKCC	GRCh37	22	30069387	30069387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	126	552	0	ENST00000338641.4:c.1252C>T	p.Arg418Cys	p.R418C	ENST00000338641	NM_000268.3	418	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108200960	108200960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	66	251	0	ENST00000278616.4:c.7327C>T	p.Arg2443Ter	p.R2443*	ENST00000278616	NM_000051.3	2443	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390185	89390185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	41	201	0	ENST00000336596.2:c.934C>T	p.Arg312Trp	p.R312W	ENST00000336596	NM_005233.5	312	Cgg/Tgg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332884	65332884	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	30	132	0	ENST00000342505.4:c.655C>T	p.Arg219Ter	p.R219*	ENST00000342505	NM_002227.2	219	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425038	49425038	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	156	676	1	ENST00000301067.7:c.13450C>T	p.Arg4484Ter	p.R4484*	ENST00000301067	NM_003482.3	4484	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	81	279	0	ENST00000398015.3:c.251G>A	p.Arg84His	p.R84H	ENST00000398015	NM_004441.4	84	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16263839	16263839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	127	560	0	ENST00000375759.3:c.10208G>A	p.Arg3403His	p.R3403H	ENST00000375759	NM_015001.2	3403	cGc/cAc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924403	131924403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	48	175	0	ENST00000265335.6:c.1076G>A	p.Arg359His	p.R359H	ENST00000265335		359	cGc/cAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930273	39930273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	24	214	0	ENST00000378444.4:c.3191C>T	p.Ser1064Leu	p.S1064L	ENST00000378444	NM_001123385.1	1064	tCg/tTg																																																																														
MPL	4352	MSKCC	GRCh37	1	43804367	43804367	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	85	376	0	ENST00000372470.3:c.367C>T	p.Arg123Ter	p.R123*	ENST00000372470	NM_005373.2	123	Cga/Tga																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31486610	31486610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	47	223	0	ENST00000344624.3:c.1902G>T	p.Glu634Asp	p.E634D	ENST00000344624		634	gaG/gaT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468517	89468517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	39	206	0	ENST00000336596.2:c.2051G>A	p.Arg684Gln	p.R684Q	ENST00000336596	NM_005233.5	684	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539936	187539936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	51	261	0	ENST00000441802.2:c.7804G>A	p.Glu2602Lys	p.E2602K	ENST00000441802	NM_005245.3	2602	Gaa/Aaa																																																																														
WT1	7490	MSKCC	GRCh37	11	32413578	32413578	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	29	281	0	ENST00000332351.3:c.1372C>T	p.Arg458Ter	p.R458*	ENST00000332351	NM_024426.4	458	Cga/Tga																																																																														
PAK7	0	MSKCC	GRCh37	20	9525071	9525071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	89	356	2	ENST00000353224.5:c.1814G>A	p.Gly605Asp	p.G605D	ENST00000353224	NM_177990.2	605	gGc/gAc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89871774	89871774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144420697		P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	114	411	0	ENST00000389301.3:c.623C>T	p.Ser208Leu	p.S208L	ENST00000389301	NM_000135.2	208	tCg/tTg																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748129	41748129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	40	232	1	ENST00000226382.2:c.640G>A	p.Gly214Ser	p.G214S	ENST00000226382	NM_003924.3	214	Ggc/Agc																																																																														
SMO	6608	MSKCC	GRCh37	7	128845485	128845485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	50	563	1	ENST00000249373.3:c.782G>A	p.Arg261His	p.R261H	ENST00000249373	NM_005631.4	261	cGc/cAc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643705	38643705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	102	468	0	ENST00000299084.4:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000299084	NM_152594.2	392	tCg/tTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48934254	48934254	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	93	223	0	ENST00000267163.4:c.709G>T	p.Glu237Ter	p.E237*	ENST00000267163	NM_000321.2	237	Gaa/Taa																																																																														
AXL	558	MSKCC	GRCh37	19	41726567	41726567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	88	463	0	ENST00000301178.4:c.112G>A	p.Val38Met	p.V38M	ENST00000301178	NM_021913.4	38	Gtg/Atg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396856	396856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	130	520	1	ENST00000262320.3:c.170C>T	p.Ser57Leu	p.S57L	ENST00000262320	NM_003502.3	57	tCg/tTg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71015123	71015123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	63	244	0	ENST00000318789.4:c.1807C>T	p.Arg603Trp	p.R603W	ENST00000318789	NM_032682.5	603	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52729039	52729039	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	45	365	0	ENST00000322088.6:c.1731C>A	p.Tyr577Ter	p.Y577*	ENST00000322088	NM_014225.5	577	taC/taA																																																																														
SPOP	8405	MSKCC	GRCh37	17	47677804	47677804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	69	355	0	ENST00000347630.2:c.1061G>A	p.Arg354His	p.R354H	ENST00000347630	NM_001007230.1	354	cGc/cAc																																																																														
RARA	5914	MSKCC	GRCh37	17	38512334	38512334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	114	458	0	ENST00000254066.5:c.1245G>T	p.Glu415Asp	p.E415D	ENST00000254066	NM_000964.3	415	gaG/gaT																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729363	41729363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	89	444	0	ENST00000242208.4:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000242208	NM_002192.2	389	tCg/tTg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800519	32800519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	151	645	1	ENST00000374899.4:c.1028G>A	p.Arg343His	p.R343H	ENST00000374899	NM_018833.2	343	cGc/cAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42040892	42040892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	90	357	0	ENST00000219905.7:c.5270G>A	p.Arg1757His	p.R1757H	ENST00000219905	NM_001164273.1	1757	cGt/cAt																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096296	2096296	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	138	629	0	ENST00000219066.1:c.211T>C	p.Ser71Pro	p.S71P	ENST00000219066	NM_002528.5	71	Tcg/Ccg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510219	187510219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	39	316	0	ENST00000441802.2:c.13294G>A	p.Glu4432Lys	p.E4432K	ENST00000441802	NM_005245.3	4432	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	60	299	0				ENST00000310581	NM_198253.2																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43705429	43705429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	126	556	0	ENST00000382044.4:c.5193G>T	p.Lys1731Asn	p.K1731N	ENST00000382044	NM_001141980.1	1731	aaG/aaT																																																																														
TET2	54790	MSKCC	GRCh37	4	106158129	106158129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	49	228	0	ENST00000380013.4:c.3030G>T	p.Glu1010Asp	p.E1010D	ENST00000380013	NM_001127208.2	1010	gaG/gaT																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419064	419064	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	68	284	2	ENST00000399788.2:c.3283G>T	p.Glu1095Ter	p.E1095*	ENST00000399788	NM_001042603.1	1095	Gaa/Taa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65313289	65313289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	42	370	0	ENST00000342505.4:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000342505	NM_002227.2	609	Gaa/Aaa																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134383	30134383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	73	503	0	ENST00000263025.4:c.148G>A	p.Glu50Lys	p.E50K	ENST00000263025	NM_002746.2	50	Gag/Aag																																																																														
CDK8	1024	MSKCC	GRCh37	13	26828867	26828867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	56	329	1	ENST00000381527.3:c.89G>A	p.Gly30Asp	p.G30D	ENST00000381527	NM_001260.1	30	gGc/gAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244077	153244077	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	62	296	0	ENST00000281708.4:c.2080G>T	p.Glu694Ter	p.E694*	ENST00000281708	NM_033632.3	694	Gaa/Taa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523708	176523708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	148	593	0	ENST00000292408.4:c.2119C>T	p.Arg707Trp	p.R707W	ENST00000292408	NM_213647.1	707	Cgg/Tgg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25497842	25497842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	127	607	3	ENST00000264709.3:c.607C>T	p.Arg203Trp	p.R203W	ENST00000264709	NM_175629.2	203	Cgg/Tgg																																																																														
AR	367	MSKCC	GRCh37	X	66942713	66942713	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	81	147	0	ENST00000374690.3:c.2494C>T	p.Arg832Ter	p.R832*	ENST00000374690	NM_000044.3	832	Cga/Tga																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11958217	11958217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	49	201	0	ENST00000353533.5:c.127G>A	p.Ala43Thr	p.A43T	ENST00000353533	NM_003010.3	43	Gca/Aca																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40684192	40684192	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199907924		P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	59	280	0	ENST00000249776.8:c.790G>A	p.Glu264Lys	p.E264K	ENST00000249776	NM_033286.3	264	Gaa/Aaa																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50481152	50481152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	65	241	0	ENST00000394963.4:c.538C>T	p.Arg180Trp	p.R180W	ENST00000394963	NM_003076.4	180	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630711	187630711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	93	381	1	ENST00000441802.2:c.271G>A	p.Gly91Arg	p.G91R	ENST00000441802	NM_005245.3	91	Gga/Aga																																																																														
MSH3	4437	MSKCC	GRCh37	5	79952236	79952236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	19	160	0	ENST00000265081.6:c.244G>A	p.Glu82Lys	p.E82K	ENST00000265081	NM_002439.4	82	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468270	50468270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	77	466	1	ENST00000331340.3:c.1505G>A	p.Arg502Gln	p.R502Q	ENST00000331340	NM_006060.4	502	cGg/cAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202813	16202813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	76	331	0	ENST00000375759.3:c.521G>A	p.Arg174Gln	p.R174Q	ENST00000375759	NM_015001.2	174	cGa/cAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255868	16255868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	48	248	0	ENST00000375759.3:c.3133C>T	p.Leu1045Phe	p.L1045F	ENST00000375759	NM_015001.2	1045	Ctt/Ttt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099457	27099457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	67	308	0	ENST00000324856.7:c.3694C>A	p.Pro1232Thr	p.P1232T	ENST00000324856	NM_006015.4	1232	Cct/Act																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933704	36933704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	112	557	0	ENST00000361632.4:c.1695C>A	p.Phe565Leu	p.F565L	ENST00000361632		565	ttC/ttA																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363449	40363449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	84	416	2	ENST00000397332.2:c.780G>T	p.Glu260Asp	p.E260D	ENST00000397332	NM_001033082.2	260	gaG/gaT																																																																														
MPL	4352	MSKCC	GRCh37	1	43818196	43818196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	72	370	0	ENST00000372470.3:c.1661C>T	p.Ala554Val	p.A554V	ENST00000372470	NM_005373.2	554	gCc/gTc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65313286	65313286	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	91	370	0	ENST00000342505.4:c.1828G>T	p.Gly610Ter	p.G610*	ENST00000342505	NM_002227.2	610	Gga/Tga																																																																														
SDHC	6391	MSKCC	GRCh37	1	161298247	161298247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	71	282	0	ENST00000367975.2:c.139G>T	p.Gly47Cys	p.G47C	ENST00000367975	NM_003001.3	47	Ggt/Tgt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163315505	163315505	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	65	298	0	ENST00000271452.3:c.845C>A	p.Ser282Ter	p.S282*	ENST00000271452	NM_145697.2	282	tCa/tAa																																																																														
PARP1	142	MSKCC	GRCh37	1	226558188	226558188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	77	367	0	ENST00000366794.5:c.2101C>A	p.Leu701Met	p.L701M	ENST00000366794	NM_001618.3	701	Ctg/Atg																																																																														
FH	2271	MSKCC	GRCh37	1	241667345	241667345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	77	254	0	ENST00000366560.3:c.1105C>T	p.Pro369Ser	p.P369S	ENST00000366560	NM_000143.3	369	Cca/Tca																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106055	8106055	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	97	320	0	ENST00000346208.3:c.875A>G	p.Lys292Arg	p.K292R	ENST00000346208		292	aAa/aGa																																																																														
TET1	80312	MSKCC	GRCh37	10	70360782	70360782	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	35	159	0	ENST00000373644.4:c.1959A>C	p.Lys653Asn	p.K653N	ENST00000373644	NM_030625.2	653	aaA/aaC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653803	89653803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	42	232	0	ENST00000371953.3:c.101C>A	p.Ala34Asp	p.A34D	ENST00000371953	NM_000314.4	34	gCt/gAt																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724144	112724144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	66	234	0	ENST00000369452.4:c.28G>A	p.Asp10Asn	p.D10N	ENST00000369452	NM_007373.3	10	Gac/Aac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114905808	114905808	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	92	338	0	ENST00000543371.1:c.827T>G	p.Phe276Cys	p.F276C	ENST00000543371	NM_001198531.1	276	tTc/tGc																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156732	2156732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	119	490	0	ENST00000434045.2:c.190T>C	p.Ser64Pro	p.S64P	ENST00000434045	NM_001127598.1	64	Tcg/Ccg																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316118	14316118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	51	194	1	ENST00000256196.4:c.307G>T	p.Glu103Ter	p.E103*	ENST00000256196		103	Gaa/Taa																																																																														
WT1	7490	MSKCC	GRCh37	11	32456833	32456833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	102	551	1	ENST00000332351.3:c.59C>T	p.Ser20Phe	p.S20F	ENST00000332351	NM_024426.4	20	tCc/tTc																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514115	69514115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	98	419	1	ENST00000294312.3:c.566C>A	p.Ser189Tyr	p.S189Y	ENST00000294312	NM_005117.2	189	tCt/tAt																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588793	69588793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	84	546	0	ENST00000168712.1:c.443C>T	p.Ser148Leu	p.S148L	ENST00000168712	NM_002007.2	148	tCg/tTg																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589836	69589836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	27	63	0	ENST00000168712.1:c.17C>T	p.Thr6Met	p.T6M	ENST00000168712	NM_002007.2	6	aCg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108150247	108150247	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141999815		P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	49	249	0	ENST00000278616.4:c.3314C>T	p.Ser1105Phe	p.S1105F	ENST00000278616	NM_000051.3	1105	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374529	118374529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	60	219	0	ENST00000534358.1:c.7922G>T	p.Arg2641Ile	p.R2641I	ENST00000534358	NM_005933.3	2641	aGa/aTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377081	118377081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	77	320	0	ENST00000534358.1:c.10474G>A	p.Ala3492Thr	p.A3492T	ENST00000534358	NM_005933.3	3492	Gct/Act																																																																														
RAD52	5893	MSKCC	GRCh37	12	1039268	1039268	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	82	368	0	ENST00000358495.3:c.229G>T	p.Glu77Ter	p.E77*	ENST00000358495	NM_134424.2	77	Gag/Tag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715653	18715653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	33	190	0	ENST00000266497.5:c.3484C>A	p.Leu1162Met	p.L1162M	ENST00000266497		1162	Ctg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378658	25378658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	30	221	0	ENST00000256078.4:c.340G>T	p.Val114Leu	p.V114L	ENST00000256078	NM_033360.2	114	Gta/Tta																																																																														
ARID2	196528	MSKCC	GRCh37	12	46242755	46242755	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	34	200	0	ENST00000334344.6:c.1715+2T>C		p.X572_splice	ENST00000334344	NM_152641.2	572																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49423248	49423261	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	CCTCTGAAGTATCT	CCTCTGAAGTATCT	-			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	85	451	0	ENST00000301067.7:c.14000-2_14011del		p.X4667_splice	ENST00000301067	NM_003482.3	4667																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428394	49428394	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	120	563	0	ENST00000301067.7:c.10411del	p.Gln3471ArgfsTer31	p.Q3471Rfs*31	ENST00000301067	NM_003482.3	3471	Cag/ag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860033	57860033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	140	537	0	ENST00000228682.2:c.773G>A	p.Ser258Asn	p.S258N	ENST00000228682	NM_005269.2	258	aGc/aAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864279	57864279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	119	512	1	ENST00000228682.2:c.1756C>T	p.His586Tyr	p.H586Y	ENST00000228682	NM_005269.2	586	Cac/Tac																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117729	115117729	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	62	225	0	ENST00000257566.3:c.706T>G	p.Phe236Val	p.F236V	ENST00000257566	NM_016569.3	236	Ttt/Gtt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29002009	29002009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	53	222	0	ENST00000282397.4:c.1156C>A	p.Arg386Ser	p.R386S	ENST00000282397	NM_002019.4	386	Cgt/Agt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29007982	29007982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	51	215	0	ENST00000282397.4:c.787C>A	p.Gln263Lys	p.Q263K	ENST00000282397	NM_002019.4	263	Caa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913195	32913195	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	90	320	0	ENST00000380152.3:c.4703A>C	p.Lys1568Thr	p.K1568T	ENST00000380152		1568	aAg/aCg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913218	32913218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	83	303	0	ENST00000380152.3:c.4726C>A	p.Leu1576Ile	p.L1576I	ENST00000380152		1576	Ctt/Att																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915264	32915264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	66	350	0	ENST00000380152.3:c.6772G>A	p.Glu2258Lys	p.E2258K	ENST00000380152		2258	Gaa/Aaa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134381	41134381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	103	338	0	ENST00000379561.5:c.1247C>A	p.Ser416Ter	p.S416*	ENST00000379561	NM_002015.3	416	tCa/tAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42058229	42058229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	53	168	0	ENST00000219905.7:c.7949G>A	p.Arg2650Gln	p.R2650Q	ENST00000219905	NM_001164273.1	2650	cGa/cAa																																																																														
BLM	641	MSKCC	GRCh37	15	91292885	91292885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	109	351	0	ENST00000355112.3:c.387G>T	p.Lys129Asn	p.K129N	ENST00000355112	NM_000057.2	129	aaG/aaT																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251130	99251130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	50	401	0	ENST00000268035.6:c.434A>G	p.Lys145Arg	p.K145R	ENST00000268035	NM_000875.3	145	aAa/aGa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3642817	3642817	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146901714		P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	133	578	0	ENST00000294008.3:c.2210G>A	p.Arg737His	p.R737H	ENST00000294008	NM_032444.2	737	cGt/cAt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020532	14020532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2020961		P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	61	258	0	ENST00000311895.7:c.503C>T	p.Ala168Val	p.A168V	ENST00000311895	NM_005236.2	168	gCt/gTt																																																																														
CDH1	999	MSKCC	GRCh37	16	68853188	68853188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	72	316	0	ENST00000261769.5:c.1571G>A	p.Arg524Gln	p.R524Q	ENST00000261769	NM_004360.3	524	cGg/cAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29664415	29664415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	70	304	0	ENST00000358273.4:c.6457C>A	p.Leu2153Met	p.L2153M	ENST00000358273	NM_001042492.2	2153	Ctg/Atg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40457694	40457694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	107	447	0	ENST00000345506.4:c.1447C>A	p.Leu483Met	p.L483M	ENST00000345506	NM_003152.3	483	Ctg/Atg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59821874	59821874	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	46	257	1	ENST00000259008.2:c.2176G>T	p.Glu726Ter	p.E726*	ENST00000259008	NM_032043.2	726	Gaa/Taa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554477	63554477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	46	449	0	ENST00000307078.5:c.262G>A	p.Asp88Asn	p.D88N	ENST00000307078	NM_004655.3	88	Gat/Aat																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617729	39617729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	44	223	0	ENST00000262039.4:c.1913G>A	p.Gly638Glu	p.G638E	ENST00000262039	NM_002647.2	638	gGa/gAa																																																																														
AXL	558	MSKCC	GRCh37	19	41745162	41745162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	133	502	0	ENST00000301178.4:c.1228A>G	p.Thr410Ala	p.T410A	ENST00000301178	NM_021913.4	410	Act/Gct																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902125	50902125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	195	483	0	ENST00000440232.2:c.17G>A	p.Arg6Gln	p.R6Q	ENST00000440232	NM_002691.3	6	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918180	50918180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	81	694	1	ENST00000440232.2:c.2497C>T	p.Arg833Cys	p.R833C	ENST00000440232	NM_002691.3	833	Cgc/Tgc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224097	39224097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	63	351	0	ENST00000402219.2:c.3047T>C	p.Ile1016Thr	p.I1016T	ENST00000402219	NM_005633.3	1016	aTa/aCa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39294834	39294834	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	53	239	0	ENST00000402219.2:c.148G>T	p.Glu50Ter	p.E50*	ENST00000402219	NM_005633.3	50	Gaa/Taa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027239	48027239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	70	219	0	ENST00000234420.5:c.2117T>C	p.Phe706Ser	p.F706S	ENST00000234420	NM_000179.2	706	tTt/tCt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715875	61715875	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	73	327	0	ENST00000401558.2:c.2054T>G	p.Val685Gly	p.V685G	ENST00000401558	NM_003400.3	685	gTc/gGc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715907	61715907	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	33	232	0	ENST00000401558.2:c.2023-1G>T		p.X675_splice	ENST00000401558	NM_003400.3	675																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726044	61726044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	44	200	0	ENST00000401558.2:c.595T>C	p.Cys199Arg	p.C199R	ENST00000401558	NM_003400.3	199	Tgc/Cgc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265062	198265062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	65	275	0	ENST00000335508.6:c.2815C>T	p.Arg939Cys	p.R939C	ENST00000335508	NM_012433.2	939	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543795	212543795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	60	245	0	ENST00000342788.4:c.1604C>A	p.Ser535Tyr	p.S535Y	ENST00000342788	NM_005235.2	535	tCt/tAt																																																																														
BARD1	580	MSKCC	GRCh37	2	215645352	215645352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	67	315	0	ENST00000260947.4:c.1246C>A	p.Leu416Met	p.L416M	ENST00000260947	NM_000465.2	416	Ctg/Atg																																																																														
INHA	3623	MSKCC	GRCh37	2	220437278	220437278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	138	698	1	ENST00000243786.2:c.182G>T	p.Arg61Ile	p.R61I	ENST00000243786	NM_002191.3	61	aGa/aTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514446	41514446	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	59	320	0	ENST00000373198.4:c.214+1G>A		p.X72_splice	ENST00000373198	NM_133170.3	72																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29130460	29130460	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	132	430	0	ENST00000328354.6:c.250G>T	p.Glu84Ter	p.E84*	ENST00000328354	NM_007194.3	84	Gaa/Taa																																																																														
EP300	2033	MSKCC	GRCh37	22	41573270	41573270	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	145	642	0	ENST00000263253.7:c.5555C>A	p.Pro1852His	p.P1852H	ENST00000263253	NM_001429.3	1852	cCt/cAt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458452	12458452	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	128	406	0	ENST00000287820.6:c.1069A>C	p.Met357Leu	p.M357L	ENST00000287820	NM_015869.4	357	Atg/Ctg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52685778	52685778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	51	290	0	ENST00000394830.3:c.694A>G	p.Thr232Ala	p.T232A	ENST00000394830	NM_018313.4	232	Acc/Gcc																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73113255	73113255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	32	84	0	ENST00000356692.5:c.596G>A	p.Ser199Asn	p.S199N	ENST00000356692		199	aGc/aAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521754	89521754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	40	253	0	ENST00000336596.2:c.2831C>T	p.Ala944Val	p.A944V	ENST00000336596	NM_005233.5	944	gCc/gTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898774	134898774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	62	252	1	ENST00000398015.3:c.1832C>T	p.Ala611Val	p.A611V	ENST00000398015	NM_004441.4	611	gCc/gTc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433404	138433404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	64	329	0	ENST00000289153.2:c.1208C>A	p.Ala403Asp	p.A403D	ENST00000289153	NM_006219.2	403	gCt/gAt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474700	138474700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	35	286	0	ENST00000289153.2:c.293G>A	p.Arg98Lys	p.R98K	ENST00000289153	NM_006219.2	98	aGa/aAa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169977805	169977805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	79	290	0	ENST00000295797.4:c.272G>T	p.Arg91Ile	p.R91I	ENST00000295797	NM_002740.5	91	aGa/aTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948147	178948147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	42	140	0	ENST00000263967.3:c.2919G>T	p.Lys973Asn	p.K973N	ENST00000263967	NM_006218.2	973	aaG/aaT																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185184691	185184691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	59	235	0	ENST00000265026.3:c.1583C>T	p.Ala528Val	p.A528V	ENST00000265026	NM_004721.4	528	gCc/gTc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1955137	1955137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	107	458	0	ENST00000382891.5:c.2224G>A	p.Ala742Thr	p.A742T	ENST00000382891	NM_133335.3	742	Gct/Act																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141108	55141108	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	45	239	0	ENST00000257290.5:c.1754G>T	p.Arg585Ile	p.R585I	ENST00000257290	NM_006206.4	585	aGa/aTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55961766	55961766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	41	301	0	ENST00000263923.4:c.2795G>A	p.Arg932Lys	p.R932K	ENST00000263923	NM_002253.2	932	aGa/aAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213774	66213774	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	61	259	0	ENST00000273854.3:c.2656G>T	p.Asp886Tyr	p.D886Y	ENST00000273854	NM_004439.5	886	Gat/Tat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66218774	66218774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	29	149	0	ENST00000273854.3:c.2284G>T	p.Asp762Tyr	p.D762Y	ENST00000273854	NM_004439.5	762	Gat/Tat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231655	66231655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	62	251	0	ENST00000273854.3:c.2045G>A	p.Gly682Glu	p.G682E	ENST00000273854	NM_004439.5	682	gGa/gAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467713	66467713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	50	222	0	ENST00000273854.3:c.556C>A	p.Leu186Ile	p.L186I	ENST00000273854	NM_004439.5	186	Ctt/Att																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509087	66509087	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	41	176	0	ENST00000273854.3:c.240A>T	p.Lys80Asn	p.K80N	ENST00000273854	NM_004439.5	80	aaA/aaT																																																																														
TET2	54790	MSKCC	GRCh37	4	106155544	106155544	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	66	235	0	ENST00000380013.4:c.445G>T	p.Glu149Ter	p.E149*	ENST00000380013	NM_001127208.2	149	Gaa/Taa																																																																														
TET2	54790	MSKCC	GRCh37	4	106155568	106155568	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	51	222	0	ENST00000380013.4:c.469G>T	p.Glu157Ter	p.E157*	ENST00000380013	NM_001127208.2	157	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249365	153249365	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	53	224	0	ENST00000281708.4:c.1413A>C	p.Glu471Asp	p.E471D	ENST00000281708	NM_033632.3	471	gaA/gaC																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153259009	153259009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	44	207	0	ENST00000281708.4:c.806T>C	p.Met269Thr	p.M269T	ENST00000281708	NM_033632.3	269	aTg/aCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540175	187540175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	74	306	0	ENST00000441802.2:c.7565G>A	p.Gly2522Asp	p.G2522D	ENST00000441802	NM_005245.3	2522	gGt/gAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628293	187628293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	88	437	0	ENST00000441802.2:c.2689G>A	p.Ala897Thr	p.A897T	ENST00000441802	NM_005245.3	897	Gcc/Acc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630776	187630776	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	97	375	0	ENST00000441802.2:c.206A>G	p.Glu69Gly	p.E69G	ENST00000441802	NM_005245.3	69	gAa/gGa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576789	67576789	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	43	190	0	ENST00000274335.5:c.871G>T	p.Glu291Ter	p.E291*	ENST00000274335		291	Gaa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86633862	86633862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	39	232	0	ENST00000274376.6:c.971G>T	p.Arg324Ile	p.R324I	ENST00000274376	NM_002890.2	324	aGa/aTa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645081	86645081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	43	201	0	ENST00000274376.6:c.1153G>A	p.Asp385Asn	p.D385N	ENST00000274376	NM_002890.2	385	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112176882	112176882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	63	208	0	ENST00000257430.4:c.5591C>A	p.Ser1864Tyr	p.S1864Y	ENST00000257430	NM_000038.5	1864	tCt/tAt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500850	149500850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	47	464	0	ENST00000261799.4:c.2380G>A	p.Glu794Lys	p.E794K	ENST00000261799	NM_002609.3	794	Gag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562951	176562951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	45	251	0	ENST00000439151.2:c.847G>T	p.Asp283Tyr	p.D283Y	ENST00000439151	NM_022455.4	283	Gat/Tat																																																																														
FLT4	2324	MSKCC	GRCh37	5	180055967	180055967	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	115	563	0	ENST00000261937.6:c.1018G>T	p.Gly340Ter	p.G340*	ENST00000261937	NM_182925.4	340	Gga/Tga																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020797	26020797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	47	269	0	ENST00000357647.3:c.80G>A	p.Arg27His	p.R27H	ENST00000357647	NM_003529.2	27	cGc/cAc																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250552	26250552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	88	506	0	ENST00000446824.2:c.282G>T	p.Gln94His	p.Q94H	ENST00000446824	NM_021018.2	94	caG/caT																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805902	32805902	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	107	616	0	ENST00000374899.4:c.109G>T	p.Gly37Ter	p.G37*	ENST00000374899	NM_018833.2	37	Gga/Tga																																																																														
TAP1	6890	MSKCC	GRCh37	6	32819886	32819886	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	58	362	0	ENST00000354258.4:c.1024G>T	p.Gly342Cys	p.G342C	ENST00000354258	NM_000593.5	342	Ggt/Tgt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33290679	33290684	+	5_prime_UTR_variant	5'UTR	DEL	CAGAAC	CAGAAC	-			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	82	428	0	ENST00000374542.5:c.-98_-93del		p.*33*	ENST00000374542	NM_001141970.1																																																																																
ROS1	6098	MSKCC	GRCh37	6	117609761	117609761	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	69	293	0	ENST00000368508.3:c.6938A>C	p.Lys2313Thr	p.K2313T	ENST00000368508	NM_002944.2	2313	aAa/aCa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687392	117687392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	63	200	0	ENST00000368508.3:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000368508	NM_002944.2	887	Gca/Aca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527319	157527319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	52	224	0	ENST00000346085.5:c.5044C>A	p.Leu1682Ile	p.L1682I	ENST00000346085	NM_020732.3	1682	Ctt/Att																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527367	157527367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	64	286	0	ENST00000346085.5:c.5092C>A	p.Leu1698Ile	p.L1698I	ENST00000346085	NM_020732.3	1698	Ctt/Att																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527434	157527434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	48	294	0	ENST00000346085.5:c.5159A>G	p.Asp1720Gly	p.D1720G	ENST00000346085	NM_020732.3	1720	gAc/gGc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431644	6431644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	71	307	0	ENST00000356142.4:c.197G>T	p.Arg66Ile	p.R66I	ENST00000356142	NM_018890.3	66	aGa/aTa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13978813	13978813	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	84	327	0	ENST00000405192.2:c.294A>C	p.Glu98Asp	p.E98D	ENST00000405192	NM_001163147.1	98	gaA/gaC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55225392	55225392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	72	314	0	ENST00000275493.2:c.1244C>T	p.Thr415Met	p.T415M	ENST00000275493	NM_005228.3	415	aCg/aTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509270	106509270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	119	421	0	ENST00000359195.3:c.1264G>T	p.Asp422Tyr	p.D422Y	ENST00000359195	NM_002649.2	422	Gac/Tac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873937	151873937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	83	255	0	ENST00000262189.6:c.8601G>T	p.Lys2867Asn	p.K2867N	ENST00000262189	NM_170606.2	2867	aaG/aaT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874428	151874428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	46	245	0	ENST00000262189.6:c.8110C>A	p.Leu2704Ile	p.L2704I	ENST00000262189	NM_170606.2	2704	Ctt/Att																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880211	151880211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	62	251	0	ENST00000262189.6:c.5113C>T	p.Arg1705Cys	p.R1705C	ENST00000262189	NM_170606.2	1705	Cgc/Tgc																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346422	152346422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	50	276	0	ENST00000359321.1:c.148G>A	p.Glu50Lys	p.E50K	ENST00000359321	NM_005431.1	50	Gaa/Aaa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38135906	38135906	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	60	315	0	ENST00000317025.8:c.3785A>C	p.Asn1262Thr	p.N1262T	ENST00000317025	NM_023034.1	1262	aAc/aCc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8338987	8338987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	53	281	1	ENST00000356435.5:c.5314G>T	p.Asp1772Tyr	p.D1772Y	ENST00000356435		1772	Gat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500913	8500913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	73	303	0	ENST00000356435.5:c.1969G>T	p.Asp657Tyr	p.D657Y	ENST00000356435		657	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994316	21994316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	80	463	0	ENST00000361570.3:c.138C>A	p.Phe46Leu	p.F46L	ENST00000361570	NM_058195.3	46	ttC/ttA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994316	21994316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	80	463	0	ENST00000361570.3:c.138C>A	p.Phe46Leu	p.F46L	ENST00000361570	NM_058195.3	46	ttC/ttA																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342796	87342796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	62	269	0	ENST00000277120.3:c.1081C>A	p.Leu361Ile	p.L361I	ENST00000277120		361	Cta/Ata																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98215899	98215899	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	90	435	0	ENST00000331920.6:c.3310T>G	p.Phe1104Val	p.F1104V	ENST00000331920	NM_000264.3	1104	Ttt/Gtt																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564380	139564380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	138	658	1	ENST00000308874.7:c.328C>T	p.Pro110Ser	p.P110S	ENST00000308874		110	Cca/Tca																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1327767	1327767	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	93	394	0	ENST00000381566.1:c.114T>A	p.Asn38Lys	p.N38K	ENST00000381566		38	aaT/aaA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966702	44966702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	57	167	0	ENST00000377967.4:c.3926C>T	p.Ala1309Val	p.A1309V	ENST00000377967	NM_021140.2	1309	gCt/gTt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123171417	123171417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	74	157	0	ENST00000218089.9:c.329G>A	p.Arg110Gln	p.R110Q	ENST00000218089	NM_001042749.1	110	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	86	647	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	60	452	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	26	290	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346648	89346648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	79	617	0	ENST00000301030.4:c.6302G>A	p.Ser2101Asn	p.S2101N	ENST00000301030	NM_001256183.1	2101	aGc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0048767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	312	452	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0048767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	176	339	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971058	+	frameshift_variant	Frame_Shift_Del	DEL	GCACGTCCAGCCGCGCCCCG	GCACGTCCAGCCGCGCCCCG	-			P-0048767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	445	526	0	ENST00000304494.5:c.300_319del	p.Gly101ArgfsTer12	p.G101Rfs*12	ENST00000304494	NM_000077.4	100	gcCGGGGCGCGGCTGGACGTGCgc/gcgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971058	+	frameshift_variant	Frame_Shift_Del	DEL	GCACGTCCAGCCGCGCCCCG	GCACGTCCAGCCGCGCCCCG	-			P-0048767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	445	526	0	ENST00000304494.5:c.300_319del	p.Gly101ArgfsTer12	p.G101Rfs*12	ENST00000304494	NM_000077.4	100	gcCGGGGCGCGGCTGGACGTGCgc/gcgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971058	+	frameshift_variant	Frame_Shift_Del	DEL	GCACGTCCAGCCGCGCCCCG	GCACGTCCAGCCGCGCCCCG	-			P-0048767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	445	526	0	ENST00000304494.5:c.300_319del	p.Gly101ArgfsTer12	p.G101Rfs*12	ENST00000304494	NM_000077.4	100	gcCGGGGCGCGGCTGGACGTGCgc/gcgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	252	436	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391956	139391956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	384	781	0	ENST00000277541.6:c.6235G>A	p.Val2079Met	p.V2079M	ENST00000277541	NM_017617.3	2079	Gtg/Atg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101061	27101062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0048772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	483	683	0	ENST00000324856.7:c.4344_4345dup	p.Gly1449GlufsTer33	p.G1449Efs*33	ENST00000324856	NM_006015.4	1448	gca/gcAGa																																																																														
EP300	2033	MSKCC	GRCh37	22	41572954	41572954	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	324	662	0	ENST00000263253.7:c.5239C>T	p.Gln1747Ter	p.Q1747*	ENST00000263253	NM_001429.3	1747	Cag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356163	66356163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	50	397	0	ENST00000273854.3:c.1334A>G	p.Asn445Ser	p.N445S	ENST00000273854	NM_004439.5	445	aAt/aGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023927	27023949	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCGGCCGCCTCGGGAGG	GCGGCGGCGGCCGCCTCGGGAGG	AGGC			P-0048772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	109	175	3	ENST00000324856.7:c.1033_1055delinsAGGC	p.Ala345ArgfsTer12	p.A345Rfs*12	ENST00000324856	NM_006015.4	345	GCGGCGGCGGCCGCCTCGGGAGGg/AGGCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	629	407	0				ENST00000310581	NM_198253.2																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56481806	56481806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	464	472	0	ENST00000267101.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000267101	NM_001982.3	245	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	1108	697	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
RB1	5925	MSKCC	GRCh37	13	48923093	48923094	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	121	262	0	ENST00000267163.4:c.543_544del	p.Ser182TyrfsTer2	p.S182Yfs*2	ENST00000267163	NM_000321.2	181	ATa/a																																																																														
RB1	5925	MSKCC	GRCh37	13	49037866	49037866	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	83	251	1	ENST00000267163.4:c.2107-1G>T		p.X703_splice	ENST00000267163	NM_000321.2	703																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464961	120464961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	164	440	0	ENST00000256646.2:c.5111G>A	p.Arg1704His	p.R1704H	ENST00000256646	NM_024408.3	1704	cGt/cAt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350517	15350517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	365	730	1	ENST00000263377.2:c.3398C>T	p.Pro1133Leu	p.P1133L	ENST00000263377	NM_058243.2	1133	cCc/cTc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50816350	50816350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	223	290	0	ENST00000398568.2:c.1790C>T	p.Ser597Phe	p.S597F	ENST00000398568	NM_001042412.1	597	tCt/tTt																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748081	72748081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	247	516	0	ENST00000357731.5:c.97C>T	p.Pro33Ser	p.P33S	ENST00000357731	NM_173808.2	33	Ccg/Tcg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717685	89717708	+	inframe_deletion	In_Frame_Del	DEL	AGTTCATGTACTTTGAGTTCCCTC	AGTTCATGTACTTTGAGTTCCCTC	-			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	240	372	0	ENST00000371953.3:c.712_735del	p.Phe238_Gln245del	p.F238_Q245del	ENST00000371953	NM_000314.4	237	aAGTTCATGTACTTTGAGTTCCCTCag/aag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574748	95574748	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	135	377	0	ENST00000343455.3:c.2349T>G	p.Asp783Glu	p.D783E	ENST00000343455	NM_177438.2	783	gaT/gaG																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11924231	11924231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	25	31	0	ENST00000353533.5:c.28G>T	p.Gly10Cys	p.G10C	ENST00000353533	NM_003010.3	10	Ggc/Tgc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349738	15349738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	641	789	0	ENST00000263377.2:c.3836C>G	p.Ala1279Gly	p.A1279G	ENST00000263377	NM_058243.2	1279	gCa/gGa																																																																														
REL	5966	MSKCC	GRCh37	2	61147720	61147735	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAGACCAAGACCTG	GAGAGACCAAGACCTG	-			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	105	269	0	ENST00000295025.8:c.1031_1046del	p.Glu344ValfsTer25	p.E344Vfs*25	ENST00000295025	NM_002908.2	344	GAGAGACCAAGACCTGgt/gt																																																																														
EP300	2033	MSKCC	GRCh37	22	41513586	41513586	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148575477		P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	199	557	0	ENST00000263253.7:c.490G>A	p.Gly164Arg	p.G164R	ENST00000263253	NM_001429.3	164	Gga/Aga																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935631	13935631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	322	402	2	ENST00000405192.2:c.1225C>A	p.Pro409Thr	p.P409T	ENST00000405192	NM_001163147.1	409	Cca/Aca																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798773	135798773	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	166	217	0	ENST00000298552.3:c.470T>G	p.Ile157Ser	p.I157S	ENST00000298552	NM_001162426.1	157	aTt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	239	687	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	119	408	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	20	277	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152018	55152018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79948560		P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	33	434	0	ENST00000257290.5:c.2450G>A	p.Arg817His	p.R817H	ENST00000257290	NM_006206.4	817	cGt/cAt																																																																														
ATR	545	MSKCC	GRCh37	3	142217556	142217557	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	62	390	0	ENST00000350721.4:c.5440dupA	p.Arg1814LysfsTer8	p.R1814Kfs*8	ENST00000350721	NM_001184.3	1814	aga/aAga																																																																														
BCL2	596	MSKCC	GRCh37	18	60985558	60985558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	206	558	0	ENST00000333681.4:c.342G>T	p.Glu114Asp	p.E114D	ENST00000333681		114	gaG/gaT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276868	15276868	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	78	825	0	ENST00000263388.2:c.5397T>G	p.Cys1799Trp	p.C1799W	ENST00000263388	NM_000435.2	1799	tgT/tgG																																																																														
SOS1	6654	MSKCC	GRCh37	2	39283859	39283859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	46	388	1	ENST00000402219.2:c.494C>A	p.Ala165Glu	p.A165E	ENST00000402219	NM_005633.3	165	gCa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112173880	112173880	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	97	321	0	ENST00000257430.4:c.2590del	p.His864IlefsTer52	p.H864Ifs*52	ENST00000257430	NM_000038.5	863	taC/ta																																																																														
APC	324	MSKCC	GRCh37	5	112175494	112175495	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAAGTG			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	52	326	0	ENST00000257430.4:c.4206_4248dup	p.Ile1417GlnfsTer6	p.I1417Qfs*6	ENST00000257430	NM_000038.5	1401	-/GCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAAGTG																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779803	135779803	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	84	424	0	ENST00000298552.3:c.2036T>G	p.Phe679Cys	p.F679C	ENST00000298552	NM_001162426.1	679	tTt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	30	496	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	47	416	2	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	125	974	0	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	33	436	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0048776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	38	291	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	46	234	1	ENST00000324856.7:c.1010G>A	p.Trp337Ter	p.W337*	ENST00000324856	NM_006015.4	337	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0048777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	344	392	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782087	9782087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	254	560	1	ENST00000377346.4:c.2110C>T	p.Gln704Ter	p.Q704*	ENST00000377346	NM_005026.3	704	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	22	335	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	186	276	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652171	36652171	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	522	573	0	ENST00000244741.5:c.293C>A	p.Ser98Ter	p.S98*	ENST00000244741	NM_000389.4	98	tCa/tAa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131205	17131205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	438	552	1	ENST00000285071.4:c.247G>A	p.Glu83Lys	p.E83K	ENST00000285071	NM_144997.5	83	Gag/Aag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	13	91	0	ENST00000331920.6:c.49_51delGGC	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175942	176175942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	110	84	1	ENST00000367669.3:c.173C>T	p.Ser58Leu	p.S58L	ENST00000367669	NM_022457.5	58	tCg/tTg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	553	554	1	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004817	16004817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	127	401	0	ENST00000268712.3:c.2437C>T	p.Pro813Ser	p.P813S	ENST00000268712	NM_006311.3	813	Ccc/Tcc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004664	16004664	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	105	378	0	ENST00000268712.3:c.2590C>T	p.Gln864Ter	p.Q864*	ENST00000268712	NM_006311.3	864	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426859	49426859	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	245	414	0	ENST00000301067.7:c.11629C>T	p.Gln3877Ter	p.Q3877*	ENST00000301067	NM_003482.3	3877	Cag/Tag																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871770	12871770	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	36	101	0	ENST00000228872.4:c.487C>G	p.Gln163Glu	p.Q163E	ENST00000228872	NM_004064.3	163	Caa/Gaa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741564	17741564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1309	277	431	0	ENST00000250003.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000250003	NM_002478.4	79	Gag/Aag																																																																														
PGR	5241	MSKCC	GRCh37	11	100909973	100909973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	69	230	0	ENST00000325455.5:c.2676G>C	p.Leu892Phe	p.L892F	ENST00000325455	NM_001202474.3	892	ttG/ttC																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131214	17131214	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	485	592	0	ENST00000285071.4:c.238G>C	p.Asp80His	p.D80H	ENST00000285071	NM_144997.5	80	Gac/Cac																																																																														
ERF	2077	MSKCC	GRCh37	19	42759149	42759149	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	349	299	0	ENST00000222329.4:c.3G>A	p.Met1?	p.M1?	ENST00000222329	NM_006494.2	1	atG/atA																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24159072	24159072	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	43	369	0	ENST00000263121.7:c.747del	p.Thr250ArgfsTer17	p.T250Rfs*17	ENST00000263121	NM_003073.3	248	taC/ta																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205751	128205751	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	597	584	0	ENST00000341105.2:c.124C>G	p.Pro42Ala	p.P42A	ENST00000341105	NM_032638.4	42	Cca/Gca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2966410	2966410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	82	485	0	ENST00000396946.4:c.1770C>G	p.Asp590Glu	p.D590E	ENST00000396946	NM_032415.4	590	gaC/gaG																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918338	44918338	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	22	136	1	ENST00000377967.4:c.963G>A	p.Trp321Ter	p.W321*	ENST00000377967	NM_021140.2	321	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	49	461	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260456	16260456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201347979		P-0048780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	26	311	0	ENST00000375759.3:c.7721C>T	p.Pro2574Leu	p.P2574L	ENST00000375759	NM_015001.2	2574	cCg/cTg																																																																														
MGA	23269	MSKCC	GRCh37	15	41988788	41988788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	27	278	0	ENST00000219905.7:c.1583del	p.Asn528MetfsTer19	p.N528Mfs*19	ENST00000219905	NM_001164273.1	527	gAa/ga																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12043155	12043155	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	14	88	0	ENST00000353533.5:c.1041-1G>A		p.X347_splice	ENST00000353533	NM_003010.3	347																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	124	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ALK	238	MSKCC	GRCh37	2	29606696	29606696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	155	376	0	ENST00000389048.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000389048	NM_004304.4	395	cGt/cAt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0048781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	298	346	1	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175621	112175622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	72	248	0	ENST00000257430.4:c.4333dup	p.Thr1445AsnfsTer10	p.T1445Nfs*10	ENST00000257430	NM_000038.5	1444	caa/cAaa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	299	572	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
PARP1	142	MSKCC	GRCh37	1	226578291	226578291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	99	435	0	ENST00000366794.5:c.437C>T	p.Pro146Leu	p.P146L	ENST00000366794	NM_001618.3	146	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0048782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	326	402	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45871940	45871940	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142462393		P-0048782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	163	529	0	ENST00000391945.4:c.308C>T	p.Pro103Leu	p.P103L	ENST00000391945	NM_000400.3	103	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	144	312	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1219357	1219357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	252	638	0	ENST00000326873.7:c.409C>T	p.Gln137Ter	p.Q137*	ENST00000326873	NM_000455.4	137	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628857	187628858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	162	411	0	ENST00000441802.2:c.2124dup	p.Val709CysfsTer9	p.V709Cfs*9	ENST00000441802	NM_005245.3	708	-/T																																																																														
STAG2	10735	MSKCC	GRCh37	X	123171377	123171377	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0048783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	115	224	0	ENST00000218089.9:c.289T>A	p.Ser97Thr	p.S97T	ENST00000218089	NM_001042749.1	97	Tcg/Acg																																																																														
ATM	472	MSKCC	GRCh37	11	108098586	108098591	+	frameshift_variant	Frame_Shift_Del	DEL	AAAATA	AAAATA	T			P-0048783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	63	184	0	ENST00000278616.4:c.156_161delinsT	p.Lys53PhefsTer8	p.K53Ffs*8	ENST00000278616	NM_000051.3	52	ggAAAATAt/ggTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	25	300	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	40	254	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	54	153	0	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	77	393	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																														
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	24	150	0	ENST00000257430.4:c.4057del	p.Glu1353AsnfsTer62	p.E1353Nfs*62	ENST00000257430	NM_000038.5	1353	Gaa/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1294163	1294163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199701877		P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	138	779	0	ENST00000310581.5:c.838G>A	p.Glu280Lys	p.E280K	ENST00000310581	NM_198253.2	280	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175876	112175876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	88	176	0	ENST00000257430.4:c.4585C>T	p.Gln1529Ter	p.Q1529*	ENST00000257430	NM_000038.5	1529	Cag/Tag																																																																														
KDR	3791	MSKCC	GRCh37	4	55955063	55955063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	90	361	0	ENST00000263923.4:c.3482G>A	p.Gly1161Glu	p.G1161E	ENST00000263923	NM_002253.2	1161	gGa/gAa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273258	198273258	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	155	372	0	ENST00000335508.6:c.952C>T	p.Arg318Ter	p.R318*	ENST00000335508	NM_012433.2	318	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	238	552	0	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
CDH1	999	MSKCC	GRCh37	16	68857530	68857530	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	59	308	0	ENST00000261769.5:c.2164+1G>A		p.X722_splice	ENST00000261769	NM_004360.3	722																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721024	176721024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	170	399	0	ENST00000439151.2:c.6655C>T	p.Arg2219Cys	p.R2219C	ENST00000439151	NM_022455.4	2219	Cgt/Tgt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120386	94120386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	52	198	0	ENST00000369303.4:c.665C>T	p.Ser222Leu	p.S222L	ENST00000369303	NM_004440.3	222	tCa/tTa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031999	26031999	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	228	335	0	ENST00000244661.2:c.290G>C	p.Cys97Ser	p.C97S	ENST00000244661	NM_003537.3	97	tGt/tCt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	120	284	0				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49432719	49432719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	131	473	0	ENST00000301067.7:c.8420C>T	p.Ser2807Phe	p.S2807F	ENST00000301067	NM_003482.3	2807	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29587415	29587415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	113	297	0	ENST00000358273.4:c.4459C>T	p.Pro1487Ser	p.P1487S	ENST00000358273	NM_001042492.2	1487	Cct/Tct																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367293	50367293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	171	306	1	ENST00000331340.3:c.100C>T	p.Pro34Ser	p.P34S	ENST00000331340	NM_006060.4	34	Ccc/Tcc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256381	16256381	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	191	400	0	ENST00000375759.3:c.3646C>T	p.Gln1216Ter	p.Q1216*	ENST00000375759	NM_015001.2	1216	Caa/Taa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115251200	115251200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	811	358	0	ENST00000369535.4:c.526G>A	p.Asp176Asn	p.D176N	ENST00000369535	NM_002524.4	176	Gat/Aat																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258746	+	missense_variant	Missense_Mutation	DNP	CA	CA	GT			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	712	248	0	ENST00000369535.4:c.36_37delinsAC	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	12	ggTGgt/ggACgt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342793	118342793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	75	179	0	ENST00000534358.1:c.919C>T	p.Pro307Ser	p.P307S	ENST00000534358	NM_005933.3	307	Cca/Tca																																																																														
KDM5A	5927	MSKCC	GRCh37	12	461378	461378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	50	200	0	ENST00000399788.2:c.1142C>T	p.Pro381Leu	p.P381L	ENST00000399788	NM_001042603.1	381	cCa/cTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800872	18800872	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	137	314	0	ENST00000266497.5:c.4248A>C	p.Lys1416Asn	p.K1416N	ENST00000266497		1416	aaA/aaC																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589353	28589353	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	115	279	0	ENST00000241453.7:c.2694C>A	p.Phe898Leu	p.F898L	ENST00000241453	NM_004119.2	898	ttC/ttA																																																																														
AXIN1	8312	MSKCC	GRCh37	16	339458	339458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	116	628	0	ENST00000262320.3:c.2444C>T	p.Thr815Ile	p.T815I	ENST00000262320	NM_003502.3	815	aCc/aTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435194	56435194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	117	571	0	ENST00000407977.2:c.1943C>T	p.Ser648Phe	p.S648F	ENST00000407977		648	tCt/tTt																																																																														
ALK	238	MSKCC	GRCh37	2	29443616	29443617	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	189	529	0	ENST00000389048.3:c.3600_3601delinsAA	p.Gly1201Arg	p.G1201R	ENST00000389048	NM_004304.4	1200	gcGGgg/gcAAgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944397	40944397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	155	402	0	ENST00000373198.4:c.2105G>T	p.Ser702Ile	p.S702I	ENST00000373198	NM_133170.3	702	aGc/aTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755555	39755556	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	239	371	0	ENST00000288319.7:c.1209_1210delinsTT	p.Pro404Ser	p.P404S	ENST00000288319	NM_182918.3	403	ccCCcg/ccTTcg																																																																														
ERG	2078	MSKCC	GRCh37	21	39755768	39755768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	251	354	0	ENST00000288319.7:c.997G>A	p.Glu333Lys	p.E333K	ENST00000288319	NM_182918.3	333	Gaa/Aaa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448582	89448582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	95	413	0	ENST00000336596.2:c.1546G>A	p.Gly516Arg	p.G516R	ENST00000336596	NM_005233.5	516	Gga/Aga																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191539	185191539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	250	395	0	ENST00000265026.3:c.2420C>T	p.Pro807Leu	p.P807L	ENST00000265026	NM_004721.4	807	cCt/cTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178552	32178552	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	345	504	0	ENST00000375023.3:c.2842C>T	p.Gln948Ter	p.Q948*	ENST00000375023	NM_004557.3	948	Cag/Tag																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202388	138202388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	91	499	0	ENST00000237289.4:c.2305C>T	p.His769Tyr	p.H769Y	ENST00000237289	NM_001270507.1	769	Cat/Tat																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600417	10600417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			116	92	787	0	ENST00000171111.5:c.1438G>T	p.Gly480Trp	p.G480W	ENST00000171111	NM_203500.1	480	Ggg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534385	187534385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	33	557	2	ENST00000441802.2:c.9341C>T	p.Thr3114Met	p.T3114M	ENST00000441802	NM_005245.3	3114	aCg/aTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11168992	11168992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			117	114	664	0	ENST00000344626.4:c.4486G>A	p.Glu1496Lys	p.E1496K	ENST00000344626	NM_003072.3	1496	Gag/Aag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054591	5054591	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			68	45	308	0	ENST00000381652.3:c.643C>T	p.Arg215Ter	p.R215*	ENST00000381652	NM_004972.3	215	Cga/Tga																																																																														
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0048098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	94	823	0	ENST00000326873.7:c.156_157dup	p.Asp53GlyfsTer12	p.D53Gfs*12	ENST00000326873	NM_000455.4	51	atg/atGGg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2213929	2213929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	104	687	1	ENST00000326181.6:c.8C>T	p.Ser3Leu	p.S3L	ENST00000326181	NM_032271.2	3	tCa/tTa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170442	11170442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			90	111	670	0	ENST00000344626.4:c.4649C>T	p.Ser1550Phe	p.S1550F	ENST00000344626	NM_003072.3	1550	tCc/tTc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47602419	47602419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	50	368	0	ENST00000263735.4:c.472G>T	p.Asp158Tyr	p.D158Y	ENST00000263735	NM_002354.2	158	Gat/Tat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747075	40747075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	31	637	0	ENST00000373198.4:c.3007G>C	p.Val1003Leu	p.V1003L	ENST00000373198	NM_133170.3	1003	Gtc/Ctc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187516936	187516936	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	34	497	0	ENST00000441802.2:c.13045G>C	p.Glu4349Gln	p.E4349Q	ENST00000441802	NM_005245.3	4349	Gag/Cag																																																																														
SDHA	6389	MSKCC	GRCh37	5	233756	233756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	70	614	0	ENST00000264932.6:c.1060G>A	p.Gly354Arg	p.G354R	ENST00000264932	NM_004168.2	354	Gga/Aga																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911159	29911159	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			165	117	626	0	ENST00000376809.5:c.458A>T	p.Asp153Val	p.D153V	ENST00000376809	NM_002116.7	153	gAc/gTc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911477	39911477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	35	577	0	ENST00000378444.4:c.5153C>A	p.Pro1718His	p.P1718H	ENST00000378444	NM_001123385.1	1718	cCt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0048524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	423	681	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643682	52643682	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	173	359	0	ENST00000394830.3:c.2214C>G	p.Tyr738Ter	p.Y738*	ENST00000394830	NM_018313.4	738	taC/taG																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510124	120510124	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	91	373	0	ENST00000256646.2:c.1385C>G	p.Ser462Ter	p.S462*	ENST00000256646	NM_024408.3	462	tCa/tGa																																																																														
PGR	5241	MSKCC	GRCh37	11	100998286	100998288	+	inframe_deletion	In_Frame_Del	DEL	CGG	CGG	-			P-0048524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	10	299	3	ENST00000325455.5:c.1514_1516del	p.Ala505del	p.A505del	ENST00000325455	NM_001202474.3	505	gCCGgg/ggg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266693	41266693	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	36	300	0	ENST00000349496.5:c.490G>C	p.Asp164His	p.D164H	ENST00000349496	NM_001904.3	164	Gac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	143	364	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	299	663	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436247	110436247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	125	276	0	ENST00000375856.3:c.2154G>T	p.Arg718Ser	p.R718S	ENST00000375856	NM_003749.2	718	agG/agT																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156554	55156554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	242	513	0	ENST00000257290.5:c.2955C>G	p.Asp985Glu	p.D985E	ENST00000257290	NM_006206.4	985	gaC/gaG																																																																														
ROS1	6098	MSKCC	GRCh37	6	117650557	117650557	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	220	508	0	ENST00000368508.3:c.5301T>G	p.Asn1767Lys	p.N1767K	ENST00000368508	NM_002944.2	1767	aaT/aaG																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992733	68992733	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	133	411	1	ENST00000288368.4:c.1698T>A	p.Asp566Glu	p.D566E	ENST00000288368	NM_024870.2	566	gaT/gaA																																																																														
AGO2	27161	MSKCC	GRCh37	8	141549421	141549421	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	151	308	1	ENST00000220592.5:c.2167C>T	p.Arg723Trp	p.R723W	ENST00000220592	NM_012154.3	723	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	37	216	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	102	555	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
AR	367	MSKCC	GRCh37	X	66766193	66766193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	68	485	0	ENST00000374690.3:c.1205C>T	p.Ala402Val	p.A402V	ENST00000374690	NM_000044.3	402	gCg/gTg																																																																														
RHOA	387	MSKCC	GRCh37	3	49397742	49397742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552757		P-0048650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	80	453	0	ENST00000418115.1:c.482C>T	p.Ala161Val	p.A161V	ENST00000418115	NM_001664.2	161	gCa/gTa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779172	135779172	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	34	409	0	ENST00000298552.3:c.2074C>T	p.Arg692Ter	p.R692*	ENST00000298552	NM_001162426.1	692	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0048653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	65	220	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374865	45374865	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	206	396	0	ENST00000262160.6:c.978A>C	p.Glu326Asp	p.E326D	ENST00000262160	NM_005901.5	326	gaA/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0048655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	282	777	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	42	341	1	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431212	49431233	+	frameshift_variant	Frame_Shift_Del	DEL	GGACCCAGCCAAACTGGGAGAA	GGACCCAGCCAAACTGGGAGAA	-			P-0048655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	28	755	0	ENST00000301067.7:c.9906_9927del	p.Ser3303AsnfsTer20	p.S3303Nfs*20	ENST00000301067	NM_003482.3	3302	tcTTCTCCCAGTTTGGCTGGGTCC/tc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28891642	28891642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	123	545	0	ENST00000282397.4:c.3379C>G	p.Pro1127Ala	p.P1127A	ENST00000282397	NM_002019.4	1127	Cct/Gct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540450	187540451	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCA			P-0048655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	87	472	0	ENST00000441802.2:c.7289_7290insTGAA	p.Ser2431GlufsTer5	p.S2431Efs*5	ENST00000441802	NM_005245.3	2430	ctg/ctTGAAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518012	8518012	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	23	493	0	ENST00000356435.5:c.1379C>G	p.Thr460Ser	p.T460S	ENST00000356435		460	aCt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	167	373	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	92	359	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0048657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	71	253	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0048657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	106	404	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	74	305	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593558	48593558	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	28	184	0	ENST00000342988.3:c.1308+1G>A		p.X436_splice	ENST00000342988	NM_005359.5	436																																																																															
TP53	7157	MSKCC	GRCh37	17	7579709	7579710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	125	534	0	ENST00000269305.4:c.86dupA	p.Asn29LysfsTer14	p.N29Kfs*14	ENST00000269305	NM_001126112.2	29	aac/aaAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107206	27107206	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	148	488	0	ENST00000324856.7:c.6817C>T	p.Gln2273Ter	p.Q2273*	ENST00000324856	NM_006015.4	2273	Caa/Taa																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811766	102811766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	136	508	0	ENST00000307046.8:c.418A>G	p.Thr140Ala	p.T140A	ENST00000307046	NM_001111285.1	140	Acc/Gcc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570102	95570103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	109	433	0	ENST00000343455.3:c.3630dup	p.Val1211ArgfsTer24	p.V1211Rfs*24	ENST00000343455	NM_177438.2	1210	-/C																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533949	63533950	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	103	505	0	ENST00000307078.5:c.1204dup	p.Glu402GlyfsTer60	p.E402Gfs*60	ENST00000307078	NM_004655.3	402	gaa/gGaa																																																																														
APC	324	MSKCC	GRCh37	5	112176575	112176575	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	75	292	2	ENST00000257430.4:c.5288del	p.Asn1763IlefsTer3	p.N1763Ifs*3	ENST00000257430	NM_000038.5	1762	Aaa/aa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	123	391	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	206	571	2	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	369	673	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023544	31023544	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116112525		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	155	516	0	ENST00000375687.4:c.3029C>T	p.Thr1010Met	p.T1010M	ENST00000375687	NM_015338.5	1010	aCg/aTg																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	216	558	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	99	277	0	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	229	679	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680656	88680656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	167	574	0	ENST00000360948.2:c.601C>T	p.Arg201Cys	p.R201C	ENST00000360948	NM_001012338.2	201	Cgc/Tgc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	215	739	3	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	150	464	1	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																														
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	326	522	1	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	128	430	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
POLE	5426	MSKCC	GRCh37	12	133214646	133214646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199979862		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	168	545	0	ENST00000320574.5:c.5632C>T	p.Arg1878Cys	p.R1878C	ENST00000320574	NM_006231.2	1878	Cgc/Tgc																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	208	480	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80359307		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	193	281	0	ENST00000380152.3:c.1813delA	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	104	384	1	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111884834	111884834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181079548		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	140	465	0	ENST00000341259.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000341259	NM_005475.2	308	cGa/cAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720964	176720964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	170	487	0	ENST00000439151.2:c.6595C>T	p.Arg2199Cys	p.R2199C	ENST00000439151	NM_022455.4	2199	Cgt/Tgt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30946592	30946594	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs752094508		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	46	185	2	ENST00000375687.4:c.25_27del	p.Lys9del	p.K9del	ENST00000375687	NM_015338.5	5	cAGAag/cag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716329	52716329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	38	651	1	ENST00000322088.6:c.773G>A	p.Arg258His	p.R258H	ENST00000322088	NM_014225.5	258	cGc/cAc																																																																														
CBL	867	MSKCC	GRCh37	11	119149355	119149356	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATG	rs1358339544		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	86	374	0	ENST00000264033.4:c.1380_1382dup	p.Asp460dup	p.D460dup	ENST00000264033	NM_005188.3	460	tat/tATGat																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573123	64573123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	130	360	0	ENST00000337652.1:c.1184C>T	p.Pro395Leu	p.P395L	ENST00000337652	NM_130803.2	395	cCg/cTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29663454	29663454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	146	429	0	ENST00000358273.4:c.6110C>T	p.Ala2037Val	p.A2037V	ENST00000358273	NM_001042492.2	2037	gCt/gTt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	442811	442811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	105	317	1	ENST00000399788.2:c.1495del	p.Glu499SerfsTer19	p.E499Sfs*19	ENST00000399788	NM_001042603.1	499	Gag/ag																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	155	454	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	160	585	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	80	444	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	111	386	0	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375486	40375486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138255473		P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	191	731	1	ENST00000293328.3:c.464C>T	p.Thr155Met	p.T155M	ENST00000293328	NM_012448.3	155	aCg/aTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307639	118307639	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	126	596	0	ENST00000534358.1:c.416del	p.Gly139GlufsTer11	p.G139Efs*11	ENST00000534358	NM_005933.3	138	Ggg/gg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527742	157527742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	156	470	0	ENST00000346085.5:c.5467G>A	p.Gly1823Arg	p.G1823R	ENST00000346085	NM_020732.3	1823	Ggg/Agg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31493321	31493322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	92	343	0	ENST00000344624.3:c.1834dupC	p.Leu612ProfsTer8	p.L612Pfs*8	ENST00000344624		612	ctg/cCtg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243778402	243778402	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	114	331	0	ENST00000263826.5:c.623del	p.Leu208Ter	p.L208*	ENST00000263826	NM_005465.4	208	tTa/ta																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983134	201983134	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	181	575	0	ENST00000359651.3:c.983A>C	p.Lys328Thr	p.K328T	ENST00000359651		328	aAg/aCg																																																																														
MDM4	4194	MSKCC	GRCh37	1	204513799	204513799	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	78	235	0	ENST00000367182.3:c.809T>C	p.Val270Ala	p.V270A	ENST00000367182	NM_001278516.1	270	gTa/gCa																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022718	12022719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	145	565	0	ENST00000396373.4:c.827dup	p.Leu277SerfsTer23	p.L277Sfs*23	ENST00000396373	NM_001987.4	275	cac/caCc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435325	121435325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	75	792	2	ENST00000257555.6:c.1358G>A	p.Gly453Asp	p.G453D	ENST00000257555		453	gGc/gAc																																																																														
CD276	80381	MSKCC	GRCh37	15	73994790	73994790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	254	560	0	ENST00000318443.5:c.274C>A	p.Arg92Ser	p.R92S	ENST00000318443	NM_001024736.1	92	Cgc/Agc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351409	89351409	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	159	611	0	ENST00000301030.4:c.1541T>C	p.Leu514Pro	p.L514P	ENST00000301030	NM_001256183.1	514	cTg/cCg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40491345	40491345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	178	508	1	ENST00000264657.5:c.455G>A	p.Arg152Gln	p.R152Q	ENST00000264657	NM_139276.2	152	cGg/cAg																																																																														
STK11	6794	MSKCC	GRCh37	19	1223130	1223130	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	180	663	0	ENST00000326873.7:c.1067T>A	p.Ile356Asn	p.I356N	ENST00000326873	NM_000455.4	356	aTc/aAc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1611788	1611788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	174	666	0	ENST00000344749.5:c.1874G>A	p.Gly625Asp	p.G625D	ENST00000344749	NM_001136139.2	625	gGt/gAt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602631	10602631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	222	818	0	ENST00000171111.5:c.947T>C	p.Val316Ala	p.V316A	ENST00000171111	NM_203500.1	316	gTg/gCg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220973	36220973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	158	557	0	ENST00000222270.7:c.5023C>A	p.Gln1675Lys	p.Q1675K	ENST00000222270	NM_014727.1	1675	Cag/Aag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095914	178095914	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	133	412	0	ENST00000397062.3:c.1417del	p.Ile473SerfsTer12	p.I473Sfs*12	ENST00000397062	NM_006164.4	473	Atc/tc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729380	41729380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	151	544	0	ENST00000242208.4:c.1149del	p.Phe384LeufsTer13	p.F384Lfs*13	ENST00000242208	NM_002192.2	383	ccC/cc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845996	151845996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	144	488	0	ENST00000262189.6:c.13016A>G	p.His4339Arg	p.H4339R	ENST00000262189	NM_170606.2	4339	cAt/cGt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900240	101900240	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	123	372	0	ENST00000374994.4:c.677del	p.Gly226GlufsTer27	p.G226Efs*27	ENST00000374994	NM_004612.2	225	cGg/cg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045909	47045909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	181	327	0	ENST00000329236.7:c.2470C>T	p.Arg824Trp	p.R824W	ENST00000329236	NM_001204466.1	824	Cgg/Tgg																																																																														
XIAP	331	MSKCC	GRCh37	X	123020156	123020156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	193	343	0	ENST00000355640.3:c.644G>A	p.Arg215His	p.R215H	ENST00000355640		215	cGt/cAt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264244	46264244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	51	358	0	ENST00000371998.3:c.1291G>A	p.Ala431Thr	p.A431T	ENST00000371998		431	Gct/Act																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	46	439	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0048697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	41	498	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	14	275	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107135	27107136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	70	483	0	ENST00000324856.7:c.6747dupA	p.Glu2250ArgfsTer28	p.E2250Rfs*28	ENST00000324856	NM_006015.4	2249	tca/tcAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89712018	89712018	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0048697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	41	225	0	ENST00000371953.3:c.634+2T>C		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591251	67591256	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGAC	GTTGAC	T			P-0048697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	29	319	0	ENST00000274335.5:c.1749_1754delinsT	p.Trp583CysfsTer17	p.W583Cfs*17	ENST00000274335		583	tgGTTGACt/tgTt																																																																														
ATM	472	MSKCC	GRCh37	11	108202738	108202738	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	132	282	0	ENST00000278616.4:c.7762C>G	p.Pro2588Ala	p.P2588A	ENST00000278616	NM_000051.3	2588	Cct/Gct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	169	339	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435189	49435189	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	187	450	0	ENST00000301067.7:c.6364C>G	p.Pro2122Ala	p.P2122A	ENST00000301067	NM_003482.3	2122	Ccc/Gcc																																																																														
B2M	567	MSKCC	GRCh37	15	45003701	45003749	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	TCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTC	TCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTC	-			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	149	274	0	ENST00000558401.1:c.-40_9del		p.*14*	ENST00000558401	NM_004048.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9923397	9923397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	96	505	0	ENST00000330684.3:c.1890G>A	p.Met630Ile	p.M630I	ENST00000330684	NM_001134407.1	630	atG/atA																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347628	89347628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	319	507	0	ENST00000301030.4:c.5322C>A	p.Asn1774Lys	p.N1774K	ENST00000301030	NM_001256183.1	1774	aaC/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	283	468	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011106	12011106	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	93	284	0	ENST00000353533.5:c.514-1G>A		p.X172_splice	ENST00000353533	NM_003010.3	172																																																																															
STK11	6794	MSKCC	GRCh37	19	1220505	1220505	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	311	593	1	ENST00000326873.7:c.597+1G>T		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610293	10610293	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	387	653	1	ENST00000171111.5:c.417del	p.Phe139LeufsTer18	p.F139Lfs*18	ENST00000171111	NM_203500.1	139	ttC/tt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017724	31017724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	116	438	0	ENST00000375687.4:c.586G>A	p.Asp196Asn	p.D196N	ENST00000375687	NM_015338.5	196	Gat/Aat																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713506	30713506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	219	392	0	ENST00000359013.4:c.906G>T	p.Lys302Asn	p.K302N	ENST00000359013	NM_001024847.2	302	aaG/aaT																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56179378	56179378	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	85	171	2	ENST00000399503.3:c.3691A>T	p.Thr1231Ser	p.T1231S	ENST00000399503	NM_005921.1	1231	Acc/Tcc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441306	149441306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	123	503	0	ENST00000286301.3:c.1733C>G	p.Pro578Arg	p.P578R	ENST00000286301	NM_005211.3	578	cCc/cGc																																																																														
MET	4233	MSKCC	GRCh37	7	116397738	116397738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	109	431	0	ENST00000397752.3:c.2012G>T	p.Gly671Val	p.G671V	ENST00000397752	NM_000245.2	671	gGt/gTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942745	68942745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	61	368	0	ENST00000288368.4:c.557G>A	p.Arg186Gln	p.R186Q	ENST00000288368	NM_024870.2	186	cGg/cAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458702	120458702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	108	448	0	ENST00000256646.2:c.6643A>G	p.Ser2215Gly	p.S2215G	ENST00000256646	NM_024408.3	2215	Agc/Ggc																																																																														
PARP1	142	MSKCC	GRCh37	1	226568871	226568871	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	138	473	0	ENST00000366794.5:c.1198A>G	p.Lys400Glu	p.K400E	ENST00000366794	NM_001618.3	400	Aag/Gag																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11924228	11924228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	19	15	0	ENST00000353533.5:c.25G>T	p.Gly9Cys	p.G9C	ENST00000353533	NM_003010.3	9	Ggc/Tgc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659212	86659212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	14	163	0	ENST00000274376.6:c.1501G>C	p.Asp501His	p.D501H	ENST00000274376	NM_002890.2	501	Gat/Cat																																																																														
ABL1	25	MSKCC	GRCh37	9	133738361	133738361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	134	453	0	ENST00000318560.5:c.761G>A	p.Gly254Glu	p.G254E	ENST00000318560	NM_005157.4	254	gGg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	266	715	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979502	7979502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	207	420	0	ENST00000319144.4:c.1523C>A	p.Ala508Glu	p.A508E	ENST00000319144	NM_001139.2	508	gCa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	67	341	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	60	340	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349700	15349701	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	107	651	0	ENST00000263377.2:c.3873_3874delinsAA	p.Glu1292Lys	p.E1292K	ENST00000263377	NM_058243.2	1291	caGGag/caAAag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981097	201981097	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	51	493	0	ENST00000359651.3:c.176G>A	p.Trp59Ter	p.W59*	ENST00000359651		59	tGg/tAg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982980	201982980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	97	646	0	ENST00000359651.3:c.829G>A	p.Glu277Lys	p.E277K	ENST00000359651		277	Gag/Aag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982387	201982387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	99	767	0	ENST00000359651.3:c.766G>C	p.Glu256Gln	p.E256Q	ENST00000359651		256	Gag/Cag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982309	201982309	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	70	695	0	ENST00000359651.3:c.689-1G>C		p.X230_splice	ENST00000359651		230																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982405	201982405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	101	699	0	ENST00000359651.3:c.784G>C	p.Glu262Gln	p.E262Q	ENST00000359651		262	Gag/Cag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983076	201983076	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	95	643	0	ENST00000359651.3:c.925G>C	p.Glu309Gln	p.E309Q	ENST00000359651		309	Gag/Cag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690617	88690617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201527669		P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	68	381	1	ENST00000360948.2:c.413G>A	p.Arg138Gln	p.R138Q	ENST00000360948	NM_001012338.2	138	cGg/cAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81925128	81925128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	117	510	0	ENST00000359376.3:c.919G>A	p.Asp307Asn	p.D307N	ENST00000359376	NM_002661.3	307	Gac/Aac																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16089956	16089956	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	94	383	0	ENST00000268712.3:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000268712	NM_006311.3	52	Cag/Tag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867706	45867706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	125	681	0	ENST00000391945.4:c.694G>T	p.Val232Phe	p.V232F	ENST00000391945	NM_000400.3	232	Gtc/Ttc																																																																														
REL	5966	MSKCC	GRCh37	2	61147175	61147175	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	64	295	1	ENST00000295025.8:c.854-1G>A		p.X285_splice	ENST00000295025	NM_002908.2	285																																																																															
NSD1	64324	MSKCC	GRCh37	5	176562225	176562225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	82	641	0	ENST00000439151.2:c.121G>A	p.Glu41Lys	p.E41K	ENST00000439151	NM_022455.4	41	Gag/Aag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781167	135781167	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	125	627	0	ENST00000298552.3:c.1798C>T	p.Gln600Ter	p.Q600*	ENST00000298552	NM_001162426.1	600	Cag/Tag																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815605	139815605	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	86	600	0	ENST00000247668.2:c.1076C>G	p.Ser359Ter	p.S359*	ENST00000247668	NM_021138.3	359	tCa/tGa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44937712	44937712	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	123	469	0	ENST00000377967.4:c.2901del	p.Thr968GlnfsTer2	p.T968Qfs*2	ENST00000377967	NM_021140.2	967	gTt/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	81	454	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0048745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	113	354	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	102	369	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692816	89692817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	93	201	1	ENST00000371953.3:c.301dup	p.Ile101AsnfsTer6	p.I101Nfs*6	ENST00000371953	NM_000314.4	100	-/A																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813797	50813797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200451975		P-0048745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	234	631	1	ENST00000398568.2:c.1351G>A	p.Val451Ile	p.V451I	ENST00000398568	NM_001042412.1	451	Gtc/Atc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107017	27107017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	45	517	0	ENST00000324856.7:c.6628C>T	p.Gln2210Ter	p.Q2210*	ENST00000324856	NM_006015.4	2210	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056313	27056314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	90	474	0	ENST00000324856.7:c.1312dup	p.Ala438GlyfsTer185	p.A438Gfs*185	ENST00000324856	NM_006015.4	437	cgg/cGgg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654610	67654610	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0048745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	155	376	0	ENST00000264010.4:c.1097T>G	p.Leu366Ter	p.L366*	ENST00000264010	NM_006565.3	366	tTa/tGa																																																																														
EP300	2033	MSKCC	GRCh37	22	41537093	41537093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	85	227	0	ENST00000263253.7:c.1921del	p.Gln641ArgfsTer4	p.Q641Rfs*4	ENST00000263253	NM_001429.3	640	atC/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097628	27097635	+	frameshift_variant	Frame_Shift_Ins	INS	TGGCGGGA	TGGCGGGA	AAGGCCGGG			P-0048745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	122	413	0	ENST00000324856.7:c.3217_3224delinsAAGGCCGGG	p.Trp1073LysfsTer32	p.W1073Kfs*32	ENST00000324856	NM_006015.4	1073	TGGCGGGAa/AAGGCCGGGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	37	416	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	82	604	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	58	358	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	35	312	0	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651382	52651382	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	45	398	0	ENST00000394830.3:c.1714G>T	p.Glu572Ter	p.E572*	ENST00000394830	NM_018313.4	572	Gag/Tag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419043	419043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	42	351	0	ENST00000399788.2:c.3304G>A	p.Glu1102Lys	p.E1102K	ENST00000399788	NM_001042603.1	1102	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023376	27023385	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCCGCCGC	TCGCCGCCGC	-			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	73	385	0	ENST00000324856.7:c.482_491del	p.Val161AlafsTer68	p.V161Afs*68	ENST00000324856	NM_006015.4	161	gTCGCCGCCGCc/gc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094437	27094437	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	52	433	0	ENST00000324856.7:c.3145C>G	p.Leu1049Val	p.L1049V	ENST00000324856	NM_006015.4	1049	Ctg/Gtg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43773221	43773221	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	36	251	0	ENST00000382044.4:c.372-1G>T		p.X124_splice	ENST00000382044	NM_001141980.1	124																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2225137	2225137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	71	754	0	ENST00000326181.6:c.1372G>A	p.Asp458Asn	p.D458N	ENST00000326181	NM_032271.2	458	Gac/Aac																																																																														
SLX4	84464	MSKCC	GRCh37	16	3642839	3642839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	67	539	0	ENST00000294008.3:c.2188G>C	p.Glu730Gln	p.E730Q	ENST00000294008	NM_032444.2	730	Gag/Cag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9927991	9927991	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	24	290	0	ENST00000330684.3:c.1748G>C	p.Gly583Ala	p.G583A	ENST00000330684	NM_001134407.1	583	gGa/gCa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50830342	50830342	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	56	325	0	ENST00000398568.2:c.2785C>G	p.Gln929Glu	p.Q929E	ENST00000398568	NM_001042412.1	929	Caa/Gaa																																																																														
AR	367	MSKCC	GRCh37	X	66765625	66765625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1306	113	825	0	ENST00000374690.3:c.637G>A	p.Glu213Lys	p.E213K	ENST00000374690	NM_000044.3	213	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	29	742	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518086	187518086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	75	428	0	ENST00000441802.2:c.12608G>T	p.Arg4203Leu	p.R4203L	ENST00000441802	NM_005245.3	4203	cGt/cTt																																																																														
PAK1	5058	MSKCC	GRCh37	11	77091035	77091035	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	34	247	0	ENST00000356341.3:c.195T>G	p.Asn65Lys	p.N65K	ENST00000356341	NM_002576.4	65	aaT/aaG																																																																														
MAX	4149	MSKCC	GRCh37	14	65544697	65544697	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0048747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	97	595	0	ENST00000358664.4:c.229A>T	p.Lys77Ter	p.K77*	ENST00000358664	NM_002382.4	77	Aaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29667529	29667529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	145	342	0	ENST00000358273.4:c.6929del	p.Pro2310LeufsTer9	p.P2310Lfs*9	ENST00000358273	NM_001042492.2	2310	Cct/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0048748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	92	341	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335485	73335505	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGAGAAATACCGTACCTCAT	ATGAGAAATACCGTACCTCAT	-			P-0048748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	19	166	0	ENST00000377767.4:c.2666_2670+16del		p.X889_splice	ENST00000377767	NM_014953.3	889																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	146	487	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
RHOA	387	MSKCC	GRCh37	3	49397800	49397800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	46	363	0	ENST00000418115.1:c.424G>A	p.Glu142Lys	p.E142K	ENST00000418115	NM_001664.2	142	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	122	537	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
PGR	5241	MSKCC	GRCh37	11	100999713	100999713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	50	810	1	ENST00000325455.5:c.89G>A	p.Arg30His	p.R30H	ENST00000325455	NM_001202474.3	30	cGc/cAc																																																																														
CDH1	999	MSKCC	GRCh37	16	68846036	68846036	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0048750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	140	439	0	ENST00000261769.5:c.1009-2A>C		p.X337_splice	ENST00000261769	NM_004360.3	337																																																																															
IDH2	3418	MSKCC	GRCh37	15	90645558	90645558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	21	190	0	ENST00000330062.3:c.65C>T	p.Ala22Val	p.A22V	ENST00000330062	NM_002168.2	22	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100144	27100145	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGACTCGGG			P-0048750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	68	639	0	ENST00000324856.7:c.3941_3950dup	p.Met1318ArgfsTer8	p.M1318Rfs*8	ENST00000324856	NM_006015.4	1314	cca/cCAGACTCGGGca																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243215	123243216	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGGTTGTGAGAGTGAGAATTCGATCCAAGTCTTCTACCAACTGCTTGAACG			P-0048750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13202	4201	569	1	ENST00000358487.5:c.2246_2297dup	p.Glu767ValfsTer18	p.E767Vfs*18	ENST00000358487	NM_000141.4	766	aat/aaCGTTCAAGCAGTTGGTAGAAGACTTGGATCGAATTCTCACTCTCACAACCAAt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50917032	50917032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	103	684	1	ENST00000440232.2:c.2284C>T	p.Arg762Ter	p.R762*	ENST00000440232	NM_002691.3	762	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	248	684	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	56	421	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	53	515	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	20	204	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659287	86659290	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	20	193	0	ENST00000274376.6:c.1579_1582del	p.Val527MetfsTer16	p.V527Mfs*16	ENST00000274376	NM_002890.2	526	TCTGtc/tc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344053	118344055	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	40	275	0	ENST00000534358.1:c.2184_2186del	p.Ser729del	p.S729del	ENST00000534358	NM_005933.3	727	TCT/-																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344789	118344789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	64	270	0	ENST00000534358.1:c.2915C>A	p.Thr972Asn	p.T972N	ENST00000534358	NM_005933.3	972	aCc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	23	489	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0048504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	51	192	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0048504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	279	743	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519390	176519390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	168	706	1	ENST00000292408.4:c.796G>A	p.Asp266Asn	p.D266N	ENST00000292408	NM_213647.1	266	Gac/Aac																																																																														
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	146	647	0	ENST00000326873.7:c.169del	p.Glu57LysfsTer7	p.E57Kfs*7	ENST00000326873	NM_000455.4	55	ctG/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	152	366	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	131	357	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	187	369	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	129	253	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631837	90631837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	283	539	0	ENST00000330062.3:c.516G>T	p.Arg172Ser	p.R172S	ENST00000330062	NM_002168.2	172	agG/agT																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	471	474	0	ENST00000245479.2:c.340G>A	p.Val114Met	p.V114M	ENST00000245479	NM_000346.3	114	Gtg/Atg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035238	6035238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1805322		P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	158	292	0	ENST00000265849.7:c.830C>T	p.Thr277Met	p.T277M	ENST00000265849	NM_000535.5	277	aCg/aTg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656949	47656949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	120	248	0	ENST00000233146.2:c.1145G>A	p.Arg382His	p.R382H	ENST00000233146	NM_000251.2	382	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153259007	153259007	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	86	264	0	ENST00000281708.4:c.808C>T	p.Gln270Ter	p.Q270*	ENST00000281708	NM_033632.3	270	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175753	112175754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	132	287	0	ENST00000257430.4:c.4462_4463insG	p.Leu1488CysfsTer26	p.L1488Cfs*26	ENST00000257430	NM_000038.5	1488	tta/tGta																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922173	39922174	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	32	225	0	ENST00000378444.4:c.3998dup	p.Cys1334ValfsTer75	p.C1334Vfs*75	ENST00000378444	NM_001123385.1	1333	ctg/ctTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931723	39931723	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	51	252	0	ENST00000378444.4:c.2876del	p.Pro959HisfsTer62	p.P959Hfs*62	ENST00000378444	NM_001123385.1	959	cCa/ca																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932610	39932611	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	39	317	0	ENST00000378444.4:c.1988_1989del	p.Pro663ArgfsTer76	p.P663Rfs*76	ENST00000378444	NM_001123385.1	663	cCT/c																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17743046	17743046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	69	601	0	ENST00000250003.3:c.954G>T	p.Gln318His	p.Q318H	ENST00000250003	NM_002478.4	318	caG/caT																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71949339	71949339	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	53	524	0	ENST00000298229.2:c.3719G>C	p.Gly1240Ala	p.G1240A	ENST00000298229	NM_001567.3	1240	gGg/gCg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998952	100998952	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	76	665	0	ENST00000325455.5:c.850G>T	p.Glu284Ter	p.E284*	ENST00000325455	NM_001202474.3	284	Gag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108199896	108199896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	65	189	0	ENST00000278616.4:c.7238A>G	p.Lys2413Arg	p.K2413R	ENST00000278616	NM_000051.3	2413	aAg/aGg																																																																														
CBL	867	MSKCC	GRCh37	11	119169067	119169067	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	31	324	0	ENST00000264033.4:c.2252-1G>T		p.X751_splice	ENST00000264033	NM_005188.3	751																																																																															
RECQL	5965	MSKCC	GRCh37	12	21643202	21643202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	58	460	0	ENST00000421138.2:c.325G>T	p.Val109Leu	p.V109L	ENST00000421138		109	Gta/Tta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	112	348	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945085	31945085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	128	499	0	ENST00000340398.3:c.16C>G	p.Gln6Glu	p.Q6E	ENST00000340398	NM_001013699.2	6	Cag/Gag																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30105605	30105605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	147	489	1	ENST00000331968.5:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000331968	NM_002742.2	361	Gaa/Aaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610162	81610162	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	117	360	0	ENST00000298171.2:c.1760T>A	p.Leu587Gln	p.L587Q	ENST00000298171	NM_000369.2	587	cTg/cAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273902	10273902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	53	614	2	ENST00000330684.3:c.367C>A	p.Pro123Thr	p.P123T	ENST00000330684	NM_001134407.1	123	Ccc/Acc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619007	37619007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	37	462	0	ENST00000447079.4:c.683C>T	p.Ser228Phe	p.S228F	ENST00000447079	NM_015083.1	228	tCt/tTt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774158	56774158	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	48	388	0	ENST00000337432.4:c.509T>G	p.Val170Gly	p.V170G	ENST00000337432	NM_058216.2	170	gTa/gGa																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732442	74732442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	69	286	0	ENST00000359995.5:c.467G>T	p.Arg156Leu	p.R156L	ENST00000359995	NM_001195427.1	156	cGa/cTa																																																																														
TP63	8626	MSKCC	GRCh37	3	189590664	189590664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	32	311	0	ENST00000264731.3:c.1229C>T	p.Thr410Ile	p.T410I	ENST00000264731	NM_003722.4	410	aCt/aTt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143067061	143067062	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	36	323	1	ENST00000262992.4:c.1651_1652delinsTT	p.Gly551Phe	p.G551F	ENST00000262992	NM_001101669.1	551	GGc/TTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672536	30672536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	51	480	0	ENST00000376406.3:c.4424G>T	p.Arg1475Met	p.R1475M	ENST00000376406	NM_014641.2	1475	aGg/aTg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741562	145741562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	185	639	0	ENST00000428558.2:c.941C>T	p.Pro314Leu	p.P314L	ENST00000428558	NM_004260.3	314	cCa/cTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	93	521	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922020	39922020	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	72	497	0	ENST00000378444.4:c.4152C>A	p.Tyr1384Ter	p.Y1384*	ENST00000378444	NM_001123385.1	1384	taC/taA																																																																														
TET1	80312	MSKCC	GRCh37	10	70405168	70405168	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	92	443	0	ENST00000373644.4:c.2682A>G	p.Ile894Met	p.I894M	ENST00000373644	NM_030625.2	894	atA/atG																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068862	30068862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	74	339	0	ENST00000331968.5:c.2067G>T	p.Gln689His	p.Q689H	ENST00000331968	NM_002742.2	689	caG/caT																																																																														
PAK7	0	MSKCC	GRCh37	20	9538256	9538256	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	73	370	0	ENST00000353224.5:c.1742G>T	p.Arg581Leu	p.R581L	ENST00000353224	NM_177990.2	581	cGg/cTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032569	47032570	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	92	604	0	ENST00000329236.7:c.246dup	p.Arg83SerfsTer20	p.R83Sfs*20	ENST00000329236	NM_001204466.1	82	gtt/gTtt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	106	453	7	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	204	703	3	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	54	612	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	43	825	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	123	393	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	40	603	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	256	973	3	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	45	221	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	124	435	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662338	227662338	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147944503		P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	54	858	1	ENST00000305123.5:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000305123	NM_005544.2	373	Cgc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039339	49039339	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	102	458	0	ENST00000267163.4:c.2326-2A>G		p.X776_splice	ENST00000267163	NM_000321.2	776																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692916	89692918	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	69	404	0	ENST00000371953.3:c.402_404del	p.Met134del	p.M134del	ENST00000371953	NM_000314.4	134	ATG/-																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725055	89725055	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	48	178	0	ENST00000371953.3:c.1038C>G	p.Tyr346Ter	p.Y346*	ENST00000371953	NM_000314.4	346	taC/taG																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	203	888	9	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	105	367	6	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285059	15285059	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	228	942	0	ENST00000263388.2:c.4556T>C	p.Leu1519Pro	p.L1519P	ENST00000263388	NM_000435.2	1519	cTg/cCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821214	72821214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	40	604	1	ENST00000268489.5:c.10961C>T	p.Ser3654Leu	p.S3654L	ENST00000268489	NM_006885.3	3654	tCg/tTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112571	115112571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	51	810	1	ENST00000257566.3:c.1169G>A	p.Cys390Tyr	p.C390Y	ENST00000257566	NM_016569.3	390	tGc/tAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	387	957	5	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	165	913	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	220	600	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	192	732	4	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524581	187524581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	159	563	0	ENST00000441802.2:c.11099A>G	p.Lys3700Arg	p.K3700R	ENST00000441802	NM_005245.3	3700	aAa/aGa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933458	36933458	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	205	823	0	ENST00000361632.4:c.1829A>G	p.Asn610Ser	p.N610S	ENST00000361632		610	aAc/aGc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24134057	24134057	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	38	415	0	ENST00000263121.7:c.214del	p.Thr72GlnfsTer13	p.T72Qfs*13	ENST00000263121	NM_003073.3	70	Aaa/aa																																																																														
CBL	867	MSKCC	GRCh37	11	119146766	119146766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	49	417	0	ENST00000264033.4:c.929C>T	p.Ala310Val	p.A310V	ENST00000264033	NM_005188.3	310	gCt/gTt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436791	110436793	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	167	864	1	ENST00000375856.3:c.1608_1610del	p.Gly537del	p.G537del	ENST00000375856	NM_003749.2	536	ggCGGt/ggt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	136	245	0	ENST00000397062.3:c.70T>G	p.Trp24Gly	p.W24G	ENST00000397062	NM_006164.4	24	Tgg/Ggg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798864	135798864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	21	289	0	ENST00000298552.3:c.379G>A	p.Val127Ile	p.V127I	ENST00000298552	NM_001162426.1	127	Gtt/Att																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793028	33793028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	42	211	0	ENST00000498907.2:c.293C>T	p.Thr98Met	p.T98M	ENST00000498907	NM_004364.3	98	aCg/aTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133219152	133219152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	425	819	0	ENST00000320574.5:c.4892G>A	p.Arg1631His	p.R1631H	ENST00000320574	NM_006231.2	1631	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105571	27105571	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	152	497	0	ENST00000324856.7:c.5184del	p.Phe1728LeufsTer4	p.F1728Lfs*4	ENST00000324856	NM_006015.4	1728	Ttt/tt																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733555	85733555	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	145	475	0	ENST00000370580.1:c.457A>G	p.Met153Val	p.M153V	ENST00000370580	NM_003921.4	153	Atg/Gtg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731137	162731137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	155	573	0	ENST00000367921.3:c.992C>T	p.Ala331Val	p.A331V	ENST00000367921	NM_006182.2	331	gCt/gTt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176132098	176132098	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	76	400	0	ENST00000367669.3:c.669A>C	p.Gln223His	p.Q223H	ENST00000367669	NM_022457.5	223	caA/caC																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200284	67200284	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187592167		P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	47	787	1	ENST00000312629.5:c.592G>A	p.Glu198Lys	p.E198K	ENST00000312629	NM_003952.2	198	Gag/Aag																																																																														
SESN3	143686	MSKCC	GRCh37	11	94911063	94911063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	28	363	0	ENST00000536441.1:c.1067G>T	p.Trp356Leu	p.W356L	ENST00000536441	NM_144665.3	356	tGg/tTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133245023	133245024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	65	811	1	ENST00000320574.5:c.2091dupC	p.Phe699ValfsTer11	p.F699Vfs*11	ENST00000320574	NM_006231.2	697	-/C																																																																														
MGA	23269	MSKCC	GRCh37	15	42032282	42032282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	177	586	0	ENST00000219905.7:c.4466G>A	p.Arg1489Lys	p.R1489K	ENST00000219905	NM_001164273.1	1489	aGg/aAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669529	88669529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	85	430	0	ENST00000360948.2:c.1369G>A	p.Gly457Ser	p.G457S	ENST00000360948	NM_001012338.2	457	Ggt/Agt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805322	89805322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	126	687	0	ENST00000389301.3:c.4228T>C	p.Cys1410Arg	p.C1410R	ENST00000389301	NM_000135.2	1410	Tgc/Cgc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881616	37881616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	167	635	1	ENST00000269571.5:c.2686C>T	p.Arg896Cys	p.R896C	ENST00000269571		896	Cgc/Tgc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62322274	62322274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	230	971	4	ENST00000508582.2:c.2602C>T	p.Arg868Trp	p.R868W	ENST00000508582		868	Cgg/Tgg																																																																														
ATR	545	MSKCC	GRCh37	3	142231180	142231180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	32	565	1	ENST00000350721.4:c.4774G>A	p.Ala1592Thr	p.A1592T	ENST00000350721	NM_001184.3	1592	Gca/Aca																																																																														
KDR	3791	MSKCC	GRCh37	4	55964941	55964941	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs141493431		P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	28	360	1	ENST00000263923.4:c.2296A>G	p.Ile766Val	p.I766V	ENST00000263923	NM_002253.2	766	Att/Gtt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66233081	66233081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	90	339	0	ENST00000273854.3:c.1918G>A	p.Gly640Arg	p.G640R	ENST00000273854	NM_004439.5	640	Ggg/Agg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155639	56155639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	164	377	0	ENST00000399503.3:c.731C>A	p.Ala244Asp	p.A244D	ENST00000399503	NM_005921.1	244	gCt/gAt																																																																														
MSH3	4437	MSKCC	GRCh37	5	80064788	80064790	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	65	263	0	ENST00000265081.6:c.2221_2223del	p.Ser741del	p.S741del	ENST00000265081	NM_002439.4	740	cCTTct/cct																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797289	32797289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	166	682	0	ENST00000374899.4:c.1820T>C	p.Leu607Pro	p.L607P	ENST00000374899	NM_018833.2	607	cTg/cCg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078333	5078333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	18	274	0	ENST00000381652.3:c.2020G>A	p.Val674Ile	p.V674I	ENST00000381652	NM_004972.3	674	Gta/Ata																																																																														
XIAP	331	MSKCC	GRCh37	X	123019779	123019779	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	155	532	0	ENST00000355640.3:c.267T>A	p.Asn89Lys	p.N89K	ENST00000355640		89	aaT/aaA																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	59	636	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578464	7578464	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	62	744	0	ENST00000269305.4:c.466delC	p.Arg156AlafsTer14	p.R156Afs*14	ENST00000269305	NM_001126112.2	156	Cgc/gc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	22	331	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041419	42041419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	48	416	0	ENST00000219905.7:c.5614G>T	p.Gly1872Trp	p.G1872W	ENST00000219905	NM_001164273.1	1872	Ggg/Tgg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38949913	38949913	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	49	314	0	ENST00000357387.3:c.4037C>G	p.Ser1346Cys	p.S1346C	ENST00000357387	NM_152756.3	1346	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	126	549	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0048622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	146	287	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0048622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	146	287	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201854	67201854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	128	597	0	ENST00000312629.5:c.1054G>C	p.Glu352Gln	p.E352Q	ENST00000312629	NM_003952.2	352	Gag/Cag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692886	89692886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	210	296	0	ENST00000371953.3:c.370T>A	p.Cys124Ser	p.C124S	ENST00000371953	NM_000314.4	124	Tgt/Agt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593477	48593477	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	133	329	0	ENST00000342988.3:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000342988	NM_005359.5	410	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	286	755	0	ENST00000269305.4:c.524del	p.Arg175ProfsTer72	p.R175Pfs*72	ENST00000269305	NM_001126112.2	175	cGc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087349	27087349	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0048622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	134	399	0	ENST00000324856.7:c.1923del	p.Leu642TyrfsTer5	p.L642Yfs*5	ENST00000324856	NM_006015.4	641	gaT/ga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984447	201984447	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	191	464	1	ENST00000359651.3:c.1112A>T	p.Asn371Ile	p.N371I	ENST00000359651		371	aAc/aTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755461	39755461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	90	504	0	ENST00000288319.7:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000288319	NM_182918.3	435	cCt/cTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356281	66356281	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	98	578	0	ENST00000273854.3:c.1216G>C	p.Glu406Gln	p.E406Q	ENST00000273854	NM_004439.5	406	Gag/Cag																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020922	26020922	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs181930473		P-0048623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	30	452	1	ENST00000357647.3:c.205C>T	p.Gln69Ter	p.Q69*	ENST00000357647	NM_003529.2	69	Cag/Tag																																																																														
SESN3	143686	MSKCC	GRCh37	11	94924672	94924672	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	45	544	1	ENST00000536441.1:c.238A>T	p.Ser80Cys	p.S80C	ENST00000536441	NM_144665.3	80	Agt/Tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	48936996	48936996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	29	303	0	ENST00000267163.4:c.764G>A	p.Arg255Gln	p.R255Q	ENST00000267163	NM_000321.2	255	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	85	293	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	140	482	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68849545	68849545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	166	488	0	ENST00000261769.5:c.1452del	p.Ile485SerfsTer37	p.I485Sfs*37	ENST00000261769	NM_004360.3	483	gCc/gc																																																																														
CDH1	999	MSKCC	GRCh37	16	68842746	68842756	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACACTGTAAG	TACACTGTAAG	-			P-0048627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	104	337	0	ENST00000261769.5:c.684_687+7del		p.X228_splice	ENST00000261769	NM_004360.3	228																																																																															
RUNX1	861	MSKCC	GRCh37	21	36171612	36171613	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0048627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	102	261	0	ENST00000300305.3:c.952_953del	p.Ser318GlnfsTer281	p.S318Qfs*281	ENST00000300305		318	TCc/c																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170002367	170002367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	67	205	0	ENST00000295797.4:c.1186G>C	p.Asp396His	p.D396H	ENST00000295797	NM_002740.5	396	Gac/Cac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094314	27094316	+	frameshift_variant	Frame_Shift_Del	DEL	ATC	ATC	G			P-0048627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	156	328	0	ENST00000324856.7:c.3022_3024delinsG	p.Ile1008AspfsTer5	p.I1008Dfs*5	ENST00000324856	NM_006015.4	1008	ATC/G																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	232	252	0				ENST00000310581	NM_198253.2																																																																																
NF1	4763	MSKCC	GRCh37	17	29528489	29528489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	91	427	0	ENST00000358273.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000358273	NM_001042492.2	416	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29588859	29588859	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	79	259	0	ENST00000358273.4:c.4708G>T	p.Glu1570Ter	p.E1570*	ENST00000358273	NM_001042492.2	1570	Gag/Tag																																																																														
MALT1	10892	MSKCC	GRCh37	18	56402553	56402553	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	77	131	0	ENST00000348428.3:c.1595T>C	p.Val532Ala	p.V532A	ENST00000348428	NM_006785.3	532	gTt/gCt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245204	46245204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	242	457	0	ENST00000334344.6:c.3298C>T	p.Gln1100Ter	p.Q1100*	ENST00000334344	NM_152641.2	1100	Cag/Tag																																																																														
BLM	641	MSKCC	GRCh37	15	91290720	91290720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs139282091		P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	62	223	0	ENST00000355112.3:c.98C>T	p.Ser33Leu	p.S33L	ENST00000355112	NM_000057.2	33	tCa/tTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29546098	29546098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	223	381	0	ENST00000358273.4:c.1603C>T	p.Gln535Ter	p.Q535*	ENST00000358273	NM_001042492.2	535	Cag/Tag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468319	50468319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	586	482	0	ENST00000331340.3:c.1554G>A	p.Met518Ile	p.M518I	ENST00000331340	NM_006060.4	518	atG/atA																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100496	8100496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	175	714	0	ENST00000346208.3:c.470C>T	p.Pro157Leu	p.P157L	ENST00000346208		157	cCg/cTg																																																																														
ATM	472	MSKCC	GRCh37	11	108160464	108160464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	188	429	0	ENST00000278616.4:c.4372G>A	p.Gly1458Arg	p.G1458R	ENST00000278616	NM_000051.3	1458	Gga/Aga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288350	33288350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141322869		P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	427	481	0	ENST00000374542.5:c.1058C>T	p.Ser353Leu	p.S353L	ENST00000374542	NM_001141970.1	353	tCa/tTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435082	18435082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	169	334	0	ENST00000266497.5:c.67G>A	p.Glu23Lys	p.E23K	ENST00000266497		23	Gaa/Aaa																																																																														
MPL	4352	MSKCC	GRCh37	1	43805722	43805722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	416	593	1	ENST00000372470.3:c.778C>T	p.Pro260Ser	p.P260S	ENST00000372470	NM_005373.2	260	Cct/Tct																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2221268	2221268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	183	713	1	ENST00000326181.6:c.352C>T	p.Pro118Ser	p.P118S	ENST00000326181	NM_032271.2	118	Cca/Tca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16089901	16089901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	104	340	0	ENST00000268712.3:c.209C>T	p.Ser70Phe	p.S70F	ENST00000268712	NM_006311.3	70	tCc/tTc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78858871	78858871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	346	719	0	ENST00000306801.3:c.1906C>T	p.His636Tyr	p.H636Y	ENST00000306801	NM_020761.2	636	Cac/Tac																																																																														
KDR	3791	MSKCC	GRCh37	4	55956146	55956146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	196	447	0	ENST00000263923.4:c.3169C>T	p.Pro1057Ser	p.P1057S	ENST00000263923	NM_002253.2	1057	Cca/Tca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510063	187510063	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	217	368	0	ENST00000441802.2:c.13450T>C	p.Phe4484Leu	p.F4484L	ENST00000441802	NM_005245.3	4484	Ttc/Ctc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805718	32805718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	314	681	0	ENST00000374899.4:c.293C>T	p.Pro98Leu	p.P98L	ENST00000374899	NM_018833.2	98	cCt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0048629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	449	349	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573563	48573564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	216	280	1	ENST00000342988.3:c.153dupA	p.Asp52ArgfsTer2	p.D52Rfs*2	ENST00000342988	NM_005359.5	49	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7579484	7579484	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	486	601	0	ENST00000269305.4:c.203del	p.Glu68GlyfsTer55	p.E68Gfs*55	ENST00000269305	NM_001126112.2	68	gAg/gg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938466	44938468	+	frameshift_variant	Frame_Shift_Ins	INS	TGC	TGC	ATCA			P-0048629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	245	257	0	ENST00000377967.4:c.3014_3016delinsATCA	p.Leu1005TyrfsTer6	p.L1005Yfs*6	ENST00000377967	NM_021140.2	1005	tTGCag/tATCAag																																																																														
MGA	23269	MSKCC	GRCh37	15	42041656	42041656	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	137	432	0	ENST00000219905.7:c.5851G>T	p.Gly1951Ter	p.G1951*	ENST00000219905	NM_001164273.1	1951	Gga/Tga																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10249269	10249269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	323	504	12	ENST00000340748.4:c.3913G>A	p.Gly1305Ser	p.G1305S	ENST00000340748		1305	Ggc/Agc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	74	301	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	247	545	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa																																																																														
NF2	4771	MSKCC	GRCh37	22	30067836	30067836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	123	379	0	ENST00000338641.4:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000338641	NM_000268.3	341	Cga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43772156	43772156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	123	574	0	ENST00000382044.4:c.559G>C	p.Glu187Gln	p.E187Q	ENST00000382044	NM_001141980.1	187	Gag/Cag																																																																														
TET1	80312	MSKCC	GRCh37	10	70426969	70426980	+	inframe_deletion	In_Frame_Del	DEL	ATACAATGGGCA	ATACAATGGGCA	-			P-0048662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	105	351	0	ENST00000373644.4:c.4629_4640del	p.Tyr1544_His1547del	p.Y1544_H1547del	ENST00000373644	NM_030625.2	1543	tcATACAATGGGCAc/tcc																																																																														
PGR	5241	MSKCC	GRCh37	11	100912785	100912785	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	125	399	0	ENST00000325455.5:c.2537C>G	p.Ser846Ter	p.S846*	ENST00000325455	NM_001202474.3	846	tCa/tGa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78727949	78727949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	207	440	0	ENST00000306801.3:c.794C>G	p.Ser265Cys	p.S265C	ENST00000306801	NM_020761.2	265	tCc/tGc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639697	47639697	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0048662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	13	327	0	ENST00000233146.2:c.790C>G	p.Gln264Glu	p.Q264E	ENST00000233146	NM_000251.2	264	Cag/Gag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670473	134670473	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	134	514	0	ENST00000398015.3:c.384C>G	p.Phe128Leu	p.F128L	ENST00000398015	NM_004441.4	128	ttC/ttG																																																																														
BRAF	673	MSKCC	GRCh37	7	140534506	140534506	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	106	357	1	ENST00000288602.6:c.407C>A	p.Ser136Ter	p.S136*	ENST00000288602	NM_004333.4	136	tCa/tAa																																																																														
SYK	6850	MSKCC	GRCh37	9	93629445	93629445	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	100	325	0	ENST00000375746.1:c.879C>G	p.Ile293Met	p.I293M	ENST00000375746	NM_001174167.1	293	atC/atG																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938477	44938477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	115	430	0	ENST00000377967.4:c.3025G>C	p.Asp1009His	p.D1009H	ENST00000377967	NM_021140.2	1009	Gat/Cat																																																																														
AR	367	MSKCC	GRCh37	X	66765079	66765079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	127	563	1	ENST00000374690.3:c.91C>T	p.Arg31Cys	p.R31C	ENST00000374690	NM_000044.3	31	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	110	570	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0048664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	110	566	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0048664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	47	282	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412494	80412494	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	105	394	1	ENST00000286548.4:c.547C>T	p.Arg183Ter	p.R183*	ENST00000286548	NM_002072.3	183	Cga/Tga																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984233	7984233	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	92	639	0	ENST00000319144.4:c.496G>C	p.Val166Leu	p.V166L	ENST00000319144	NM_001139.2	166	Gtg/Ctg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	54	395	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	56	390	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	213	463	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	361	657	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	118	465	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	84	271	3	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439832	51439832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	208	386	0	ENST00000262662.1:c.397C>T	p.Arg133Trp	p.R133W	ENST00000262662		133	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112174471	112174475	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAC	AAAAC	-			P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	137	304	0	ENST00000257430.4:c.3183_3187del	p.Gln1062Ter	p.Q1062*	ENST00000257430	NM_000038.5	1060	atAAAACaa/ataa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678052	117678052	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	58	330	0	ENST00000368508.3:c.3881A>T	p.Asn1294Ile	p.N1294I	ENST00000368508	NM_002944.2	1294	aAt/aTt																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540380	23540380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	248	416	2	ENST00000380871.4:c.23G>T	p.Arg8Leu	p.R8L	ENST00000380871	NM_006167.3	8	cGg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	708	747	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	2192	399	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	204	741	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	204	741	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	204	741	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434148	12434148	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	334	413	0	ENST00000287820.6:c.516C>G	p.Ile172Met	p.I172M	ENST00000287820	NM_015869.4	172	atC/atG																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112430	115112430	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	325	692	0	ENST00000257566.3:c.1310A>G	p.His437Arg	p.H437R	ENST00000257566	NM_016569.3	437	cAt/cGt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602854	10602854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	501	885	0	ENST00000171111.5:c.724G>A	p.Glu242Lys	p.E242K	ENST00000171111	NM_203500.1	242	Gag/Aag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100646	8100646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	478	800	0	ENST00000346208.3:c.620C>T	p.Ala207Val	p.A207V	ENST00000346208		207	gCc/gTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374487	118374487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	33	481	1	ENST00000534358.1:c.7880G>A	p.Arg2627His	p.R2627H	ENST00000534358	NM_005933.3	2627	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432590	49432590	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	326	802	1	ENST00000301067.7:c.8549del	p.Leu2850GlnfsTer60	p.L2850Qfs*60	ENST00000301067	NM_003482.3	2850	cTa/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435236	49435243	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCGGAG	ATGCGGAG	-			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	278	707	0	ENST00000301067.7:c.6310_6317del	p.Leu2104SerfsTer48	p.L2104Sfs*48	ENST00000301067	NM_003482.3	2104	CTCCGCATt/t																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120912	115120912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	306	696	0	ENST00000257566.3:c.94G>T	p.Ala32Ser	p.A32S	ENST00000257566	NM_016569.3	32	Gcg/Tcg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135409	30135409	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	222	386	0	ENST00000331968.5:c.409G>C	p.Ala137Pro	p.A137P	ENST00000331968	NM_002742.2	137	Gcc/Ccc																																																																														
BLM	641	MSKCC	GRCh37	15	91303498	91303498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	337	408	0	ENST00000355112.3:c.1209G>C	p.Gln403His	p.Q403H	ENST00000355112	NM_000057.2	403	caG/caC																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873104	136873104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	321	515	1	ENST00000241393.3:c.394C>A	p.Leu132Met	p.L132M	ENST00000241393	NM_003467.2	132	Ctg/Atg																																																																														
EP300	2033	MSKCC	GRCh37	22	41523642	41523642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	334	728	0	ENST00000263253.7:c.1058G>T	p.Arg353Leu	p.R353L	ENST00000263253	NM_001429.3	353	cGc/cTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390966	89390967	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	111	510	1	ENST00000336596.2:c.1032_1033delinsAA	p.Asp344_Trp345delinsGluArg	p.D344_W345delinsER	ENST00000336596	NM_005233.5	344	gaCTgg/gaAAgg																																																																														
KDR	3791	MSKCC	GRCh37	4	55955134	55955134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	2075	383	1	ENST00000263923.4:c.3411G>T	p.Gln1137His	p.Q1137H	ENST00000263923	NM_002253.2	1137	caG/caT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230789	66230789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	172	400	1	ENST00000273854.3:c.2182A>G	p.Met728Val	p.M728V	ENST00000273854	NM_004439.5	728	Atg/Gtg																																																																														
STK19	8859	MSKCC	GRCh37	6	31948457	31948457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	190	374	0	ENST00000375331.2:c.928C>T	p.Arg310Trp	p.R310W	ENST00000375331	NM_004197.1	310	Cgg/Tgg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94124453	94124453	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	189	492	0	ENST00000369303.4:c.130G>T	p.Glu44Ter	p.E44*	ENST00000369303	NM_004440.3	44	Gag/Tag																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923363	36923363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	390	607	1	ENST00000358127.4:c.899C>A	p.Pro300His	p.P300H	ENST00000358127	NM_001280556.1	300	cCc/cAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039696	47039696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	307	725	0	ENST00000329236.7:c.914A>G	p.Lys305Arg	p.K305R	ENST00000329236	NM_001204466.1	305	aAg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	223	775	1	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923353	9923353	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	153	565	0	ENST00000330684.3:c.1934A>G	p.Tyr645Cys	p.Y645C	ENST00000330684	NM_001134407.1	645	tAc/tGc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858208	59858208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	126	484	0	ENST00000259008.2:c.1787C>G	p.Pro596Arg	p.P596R	ENST00000259008	NM_032043.2	596	cCa/cGa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21620051	21620051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	166	509	0	ENST00000382592.4:c.115G>A	p.Ala39Thr	p.A39T	ENST00000382592	NM_014572.2	39	Gca/Aca																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554338	81554338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	84	358	0	ENST00000298171.2:c.358G>A	p.Asp120Asn	p.D120N	ENST00000298171	NM_000369.2	120	Gat/Aat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0048671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	92	282	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404587	8404587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	67	320	0	ENST00000356435.5:c.4160C>T	p.Ala1387Val	p.A1387V	ENST00000356435		1387	gCg/gTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	136	434	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	80	437	0	ENST00000342988.3:c.1529G>A	p.Gly510Glu	p.G510E	ENST00000342988	NM_005359.5	510	gGa/gAa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138409909	138409909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	113	428	0	ENST00000289153.2:c.1969T>C	p.Ser657Pro	p.S657P	ENST00000289153	NM_006219.2	657	Tct/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	771	678	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968265	15968265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	400	346	0	ENST00000268712.3:c.5020C>T	p.Pro1674Ser	p.P1674S	ENST00000268712	NM_006311.3	1674	Ccc/Tcc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462404	89462404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	192	435	0	ENST00000336596.2:c.1876G>A	p.Val626Ile	p.V626I	ENST00000336596	NM_005233.5	626	Gtt/Att																																																																														
TSC1	7248	MSKCC	GRCh37	9	135802595	135802595	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	208	288	0	ENST00000298552.3:c.203A>C	p.His68Pro	p.H68P	ENST00000298552	NM_001162426.1	68	cAt/cCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	45	578	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0048687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	28	260	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481659	56481659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	44	676	1	ENST00000267101.3:c.694G>A	p.Ala232Thr	p.A232T	ENST00000267101	NM_001982.3	232	Gcc/Acc																																																																														
LYN	4067	MSKCC	GRCh37	8	56866484	56866484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	38	588	0	ENST00000519728.1:c.731G>A	p.Arg244Gln	p.R244Q	ENST00000519728	NM_002350.3	244	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0047580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	537	554	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930709	32930709	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			551	124	538	0	ENST00000380152.3:c.7580T>G	p.Val2527Gly	p.V2527G	ENST00000380152		2527	gTa/gGa																																																																														
SUFU	51684	MSKCC	GRCh37	10	104353802	104353802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	37	512	0	ENST00000369902.3:c.736G>C	p.Glu246Gln	p.E246Q	ENST00000369902	NM_016169.3	246	Gag/Cag																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321162	62321162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1422	171	579	0	ENST00000508582.2:c.2157C>G	p.Ile719Met	p.I719M	ENST00000508582		719	atC/atG																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517423	176517423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			934	106	533	0	ENST00000292408.4:c.124G>A	p.Glu42Lys	p.E42K	ENST00000292408	NM_213647.1	42	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0048437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	69	329	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0048437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	216	640	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681124	37681124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	63	428	0	ENST00000447079.4:c.3293C>T	p.Ala1098Val	p.A1098V	ENST00000447079	NM_015083.1	1098	gCt/gTt																																																																														
MGA	23269	MSKCC	GRCh37	15	42052657	42052818	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGAGAAATTAAAGATCACATTGGGATTACTTCATTCTTCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGTTCTGTGTAAATGACAGTAAGAGCTTGACTAAGAGATTCTTACCGATGATATGAGAAAGATAATCCACTGACATATAAGGGAGA	TTGAGAAATTAAAGATCACATTGGGATTACTTCATTCTTCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGTTCTGTGTAAATGACAGTAAGAGCTTGACTAAGAGATTCTTACCGATGATATGAGAAAGATAATCCACTGACATATAAGGGAGA	-			P-0048597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	42	685	0	ENST00000219905.7:c.7332_7398+95del		p.X2444_splice	ENST00000219905	NM_001164273.1	2444																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3789629	3789629	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	117	627	2	ENST00000262367.5:c.4230del	p.Phe1410LeufsTer49	p.F1410Lfs*49	ENST00000262367	NM_004380.2	1410	ttT/tt																																																																														
MGA	23269	MSKCC	GRCh37	15	42052611	42052611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	214	643	0	ENST00000219905.7:c.7282C>G	p.His2428Asp	p.H2428D	ENST00000219905	NM_001164273.1	2428	Cac/Gac																																																																														
ERF	2077	MSKCC	GRCh37	19	42753053	42753056	+	frameshift_variant	Frame_Shift_Del	DEL	CCAC	CCAC	-			P-0048600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	132	846	0	ENST00000222329.4:c.1208_1211del	p.Gly403AlafsTer13	p.G403Afs*13	ENST00000222329	NM_006494.2	403	gGTGGc/gc																																																																														
MITF	4286	MSKCC	GRCh37	3	70005654	70005654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	134	613	0	ENST00000352241.4:c.986G>A	p.Gly329Asp	p.G329D	ENST00000352241	NM_198159.2	329	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	64	372	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	15	470	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	255	746	1	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519710	176519710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150737523		P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	218	767	0	ENST00000292408.4:c.982G>A	p.Ala328Thr	p.A328T	ENST00000292408	NM_213647.1	328	Gca/Aca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	166	672	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41568636	41568636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	64	474	0	ENST00000263253.7:c.4586G>A	p.Arg1529Gln	p.R1529Q	ENST00000263253	NM_001429.3	1529	cGa/cAa																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	289	849	0	ENST00000481739.1:c.1280C>A	p.Ser427Tyr	p.S427Y	ENST00000481739	NM_002957.4	427	tCc/tAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938390	44938390	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	148	260	0	ENST00000377967.4:c.2939-1G>C		p.X980_splice	ENST00000377967	NM_021140.2	980																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115962	8115963	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	181	500	0	ENST00000346208.3:c.1309_1310dup	p.Ser437ArgfsTer39	p.S437Rfs*39	ENST00000346208		436	-/AG																																																																														
AKT1	207	MSKCC	GRCh37	14	105238761	105238761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	146	761	0	ENST00000349310.3:c.1201G>A	p.Glu401Lys	p.E401K	ENST00000349310	NM_001014432.1	401	Gag/Aag																																																																														
BLM	641	MSKCC	GRCh37	15	91347409	91347409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	108	383	0	ENST00000355112.3:c.3571G>A	p.Glu1191Lys	p.E1191K	ENST00000355112	NM_000057.2	1191	Gaa/Aaa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143033780	143033780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	80	556	0	ENST00000262992.4:c.2191C>G	p.Leu731Val	p.L731V	ENST00000262992	NM_001101669.1	731	Cta/Gta																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524534	176524534	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs192201146		P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	165	850	0	ENST00000292408.4:c.2266G>A	p.Asp756Asn	p.D756N	ENST00000292408	NM_213647.1	756	Gac/Aac																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250592	26250599	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTTGAA	GTCTTGAA	-			P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	167	801	0	ENST00000446824.2:c.235_242del	p.Phe79ArgfsTer25	p.F79Rfs*25	ENST00000446824	NM_021018.2	79	TTCAAGACc/c																																																																														
LYN	4067	MSKCC	GRCh37	8	56882326	56882326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	491	642	0	ENST00000519728.1:c.1024C>A	p.Pro342Thr	p.P342T	ENST00000519728	NM_002350.3	342	Cca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	55	932	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	143	712	0	ENST00000250448.2:c.754_774delAACATGTTCGAGAACGGCTGC	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	87	827	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
MGA	23269	MSKCC	GRCh37	15	42040933	42040934	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	50	1006	1	ENST00000219905.7:c.5313_5314del	p.Pro1772TyrfsTer3	p.P1772Yfs*3	ENST00000219905	NM_001164273.1	1771	TCt/t																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645688	12645688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	56	497	0	ENST00000251849.4:c.781C>A	p.Pro261Thr	p.P261T	ENST00000251849	NM_002880.3	261	Cct/Act																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713339	30713339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	62	804	0	ENST00000359013.4:c.739G>T	p.Asp247Tyr	p.D247Y	ENST00000359013	NM_001024847.2	247	Gat/Tat																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372460	55372460	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	95	1164	1	ENST00000297316.4:c.1150T>C	p.Ser384Pro	p.S384P	ENST00000297316	NM_022454.3	384	Tcc/Ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	450	702	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993296	72993296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	738	767	0	ENST00000268489.5:c.749C>T	p.Ser250Phe	p.S250F	ENST00000268489	NM_006885.3	250	tCt/tTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29509541	29509541	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	71	498	0	ENST00000358273.4:c.746T>C	p.Leu249Pro	p.L249P	ENST00000358273	NM_001042492.2	249	cTa/cCa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562891	21562891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	192	642	1	ENST00000382592.4:c.1028C>A	p.Pro343His	p.P343H	ENST00000382592	NM_014572.2	343	cCc/cAc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998959	11998959	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	216	458	0	ENST00000353533.5:c.461G>C	p.Arg154Pro	p.R154P	ENST00000353533	NM_003010.3	154	cGg/cCg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169992	32169992	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	431	838	0	ENST00000375023.3:c.3616G>T	p.Gly1206Ter	p.G1206*	ENST00000375023	NM_004557.3	1206	Gga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151846194	151846194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	89	616	0	ENST00000262189.6:c.12818C>G	p.Pro4273Arg	p.P4273R	ENST00000262189	NM_170606.2	4273	cCt/cGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29592352	29592367	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACGGAGGTAAGAAATA	ACGGAGGTAAGAAATA	CTGG			P-0048603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	16	506	1	ENST00000358273.4:c.4830_4835+10delinsCTGG		p.X1610_splice	ENST00000358273	NM_001042492.2	1610																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012449-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			190	61	304	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189892	66189892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012449-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			212	52	304	0	ENST00000273854.3:c.3054G>T	p.Lys1018Asn	p.K1018N	ENST00000273854	NM_004439.5	1018	aaG/aaT																																																																														
WT1	7490	MSKCC	GRCh37	11	32456842	32456842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012449-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			317	44	775	0	ENST00000332351.3:c.50C>T	p.Thr17Met	p.T17M	ENST00000332351	NM_024426.4	17	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012449-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			259	109	541	0	ENST00000269305.4:c.989T>G	p.Leu330Arg	p.L330R	ENST00000269305	NM_001126112.2	330	cTt/cGt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041657	47041657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012449-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			86	40	306	0	ENST00000329236.7:c.1648G>T	p.Glu550Ter	p.E550*	ENST00000329236	NM_001204466.1	550	Gag/Tag																																																																														
NUF2	83540	MSKCC	GRCh37	1	163318766	163318766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012449-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			235	84	246	0	ENST00000271452.3:c.1156G>T	p.Ala386Ser	p.A386S	ENST00000271452	NM_145697.2	386	Gct/Tct																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785767	50785767	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012449-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			242	23	386	0	ENST00000398568.2:c.757G>T	p.Asp253Tyr	p.D253Y	ENST00000398568	NM_001042412.1	253	Gat/Tat																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0025941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	17	192	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662554	227662554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	23	525	0	ENST00000305123.5:c.901C>T	p.Arg301Cys	p.R301C	ENST00000305123	NM_005544.2	301	Cgc/Tgc																																																																														
KDR	3791	MSKCC	GRCh37	4	55981469	55981469	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			148	17	234	0	ENST00000263923.4:c.468T>G	p.Asn156Lys	p.N156K	ENST00000263923	NM_002253.2	156	aaT/aaG																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205183	38205183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	29	460	0	ENST00000317025.8:c.507G>T	p.Glu169Asp	p.E169D	ENST00000317025	NM_023034.1	169	gaG/gaT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249019	55249019	+	protein_altering_variant	In_Frame_Ins	INS	C	C	TACAACCCCT			P-0025941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	21	496	0	ENST00000275493.2:c.2317delinsTACAACCCCT	p.His773delinsTyrAsnProTyr	p.H773delinsYNPY	ENST00000275493	NM_005228.3	773	Cac/TACAACCCCTac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043891-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			265	61	265	0				ENST00000310581	NM_198253.2																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89341555	89341555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043891-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			450	114	534	0	ENST00000301030.4:c.7515C>G	p.Phe2505Leu	p.F2505L	ENST00000301030	NM_001256183.1	2505	ttC/ttG																																																																														
CCND2	894	MSKCC	GRCh37	12	4387995	4387995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043891-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			336	108	401	2	ENST00000261254.3:c.481G>A	p.Glu161Lys	p.E161K	ENST00000261254	NM_001759.3	161	Gag/Aag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647921	3647921	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146021821		P-0043891-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			446	217	697	0	ENST00000294008.3:c.1243G>A	p.Glu415Lys	p.E415K	ENST00000294008	NM_032444.2	415	Gag/Aag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983111	201983111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043891-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			277	109	475	0	ENST00000359651.3:c.960G>C	p.Lys320Asn	p.K320N	ENST00000359651		320	aaG/aaC																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057318	180057318	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043891-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			510	121	617	0	ENST00000261937.6:c.420C>G	p.Ile140Met	p.I140M	ENST00000261937	NM_182925.4	140	atC/atG																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983030	201983030	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043891-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			404	139	597	0	ENST00000359651.3:c.879G>C	p.Met293Ile	p.M293I	ENST00000359651		293	atG/atC																																																																														
KDM5A	5927	MSKCC	GRCh37	12	394715	394715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043891-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			243	131	364	0	ENST00000399788.2:c.4980G>T	p.Lys1660Asn	p.K1660N	ENST00000399788	NM_001042603.1	1660	aaG/aaT																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028627	12028627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043891-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			214	60	220	0	ENST00000353533.5:c.830C>G	p.Pro277Arg	p.P277R	ENST00000353533	NM_003010.3	277	cCa/cGa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41267767	41267767	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043891-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			213	75	300	0	ENST00000357654.3:c.110C>G	p.Thr37Arg	p.T37R	ENST00000357654	NM_007294.3	37	aCa/aGa																																																																														
INSR	3643	MSKCC	GRCh37	19	7170732	7170732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043891-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			324	130	465	0	ENST00000302850.5:c.1299G>C	p.Gln433His	p.Q433H	ENST00000302850	NM_000208.2	433	caG/caC																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256708	19256708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043891-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			610	145	626	0	ENST00000162023.5:c.1005G>T	p.Lys335Asn	p.K335N	ENST00000162023		335	aaG/aaT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949731	151949731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043891-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			183	65	251	0	ENST00000262189.6:c.1369G>A	p.Asp457Asn	p.D457N	ENST00000262189	NM_170606.2	457	Gac/Aac																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205070	128205070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047309-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	170	936	2	ENST00000341105.2:c.371C>T	p.Thr124Met	p.T124M	ENST00000341105	NM_032638.4	124	aCg/aTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680682	88680682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047309-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	111	548	1	ENST00000360948.2:c.575C>A	p.Ala192Asp	p.A192D	ENST00000360948	NM_001012338.2	192	gCt/gAt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443757	52443757	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0047309-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	150	671	0	ENST00000460680.1:c.40C>G	p.Leu14Val	p.L14V	ENST00000460680	NM_004656.3	14	Ctc/Gtc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	21	196	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	36	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	119	791	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	42	407	1	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	40	429	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
NF1	4763	MSKCC	GRCh37	17	29579996	29579996	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	31	261	1	ENST00000358273.4:c.4157delA	p.Lys1386ArgfsTer20	p.K1386Rfs*20	ENST00000358273	NM_001042492.2	1384	gAa/ga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	60	528	2	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163695	32163695	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	50	550	0	ENST00000375023.3:c.5531G>C	p.Arg1844Pro	p.R1844P	ENST00000375023	NM_004557.3	1844	cGg/cCg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720650	89720650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	84	337	0	ENST00000371953.3:c.802-1G>C		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176517955	176517955	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	53	614	0	ENST00000292408.4:c.457del	p.Gln153SerfsTer58	p.Q153Sfs*58	ENST00000292408	NM_213647.1	151	caC/ca																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330610	65330611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	34	353	0	ENST00000342505.4:c.1035dupA	p.Leu346ThrfsTer4	p.L346Tfs*4	ENST00000342505	NM_002227.2	345	-/A																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246061	41246061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	44	530	0	ENST00000357654.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000357654	NM_007294.3	496	cGt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	57	834	3	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522693	67522693	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	20	211	0	ENST00000274335.5:c.193delG	p.Glu65LysfsTer10	p.E65Kfs*10	ENST00000274335		64	Ggg/gg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341251	89341251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	45	487	0	ENST00000301030.4:c.7684G>A	p.Glu2562Lys	p.E2562K	ENST00000301030	NM_001256183.1	2562	Gag/Aag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	46	534	0	ENST00000263377.2:c.766delC	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																																																														
ERF	2077	MSKCC	GRCh37	19	42754628	42754628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	64	803	0	ENST00000222329.4:c.112C>T	p.Arg38Trp	p.R38W	ENST00000222329	NM_006494.2	38	Cgg/Tgg																																																																														
MED12	9968	MSKCC	GRCh37	X	70343021	70343021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	72	538	0	ENST00000374080.3:c.1562G>A	p.Arg521His	p.R521H	ENST00000374080		521	cGt/cAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133212519	133212519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	39	401	0	ENST00000320574.5:c.5770G>A	p.Gly1924Arg	p.G1924R	ENST00000320574	NM_006231.2	1924	Gga/Aga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949753	151949753	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	38	306	0	ENST00000262189.6:c.1347G>A	p.Trp449Ter	p.W449*	ENST00000262189	NM_170606.2	449	tgG/tgA																																																																														
CD276	80381	MSKCC	GRCh37	15	73995362	73995362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	35	451	0	ENST00000318443.5:c.668G>A	p.Arg223His	p.R223H	ENST00000318443	NM_001024736.1	223	cGc/cAc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074275	8074276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	43	432	0	ENST00000377482.5:c.383_384insA	p.Pro129SerfsTer19	p.P129Sfs*19	ENST00000377482	NM_018948.3	128	cct/ccAt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780803	9780803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	76	715	0	ENST00000377346.4:c.1525C>G	p.Leu509Val	p.L509V	ENST00000377346	NM_005026.3	509	Ctg/Gtg																																																																														
PARP1	142	MSKCC	GRCh37	1	226552737	226552737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	58	436	0	ENST00000366794.5:c.2624A>G	p.Gln875Arg	p.Q875R	ENST00000366794	NM_001618.3	875	cAg/cGg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106040	8106040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	59	452	0	ENST00000346208.3:c.860G>A	p.Cys287Tyr	p.C287Y	ENST00000346208		287	tGc/tAc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628407	21628407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	34	376	0	ENST00000421138.2:c.1211G>A	p.Arg404His	p.R404H	ENST00000421138		404	cGt/cAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48923141	48923141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	34	217	0	ENST00000267163.4:c.589A>G	p.Thr197Ala	p.T197A	ENST00000267163	NM_000321.2	197	Aca/Gca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828090	72828090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	75	686	0	ENST00000268489.5:c.8491G>T	p.Asp2831Tyr	p.D2831Y	ENST00000268489	NM_006885.3	2831	Gac/Tac																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905054	50905055	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	58	675	0	ENST00000440232.2:c.342dup	p.Pro115AlafsTer19	p.P115Afs*19	ENST00000440232	NM_002691.3	112	-/G																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128030505	128030505	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	54	468	0	ENST00000285398.2:c.1763A>G	p.Glu588Gly	p.E588G	ENST00000285398	NM_000122.1	588	gAa/gGa																																																																														
NF2	4771	MSKCC	GRCh37	22	30061035	30061035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	41	329	0	ENST00000338641.4:c.867G>T	p.Lys289Asn	p.K289N	ENST00000338641	NM_000268.3	289	aaG/aaT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47139507	47139507	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	43	370	0	ENST00000409792.3:c.5080A>G	p.Arg1694Gly	p.R1694G	ENST00000409792	NM_014159.6	1694	Aga/Gga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247303	153247303	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	39	256	0	ENST00000281708.4:c.1499A>G	p.His500Arg	p.H500R	ENST00000281708	NM_033632.3	500	cAt/cGt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35860985	35860990	+	inframe_deletion	In_Frame_Del	DEL	CTCATT	CTCATT	-			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	34	314	0	ENST00000303115.3:c.119_124del	p.Phe40_Ser41del	p.F40_S41del	ENST00000303115	NM_002185.3	38	taCTCATTc/tac																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020872	26020872	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs202025373		P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	31	439	0	ENST00000357647.3:c.155T>A	p.Ile52Asn	p.I52N	ENST00000357647	NM_003529.2	52	aTc/aAc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739435	145739440	+	inframe_deletion	In_Frame_Del	DEL	TGTGGC	TGTGGC	-			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	65	801	1	ENST00000428558.2:c.1930_1935del	p.Ala644_Thr645del	p.A644_T645del	ENST00000428558	NM_004260.3	644	GCCACA/-																																																																														
RXRA	6256	MSKCC	GRCh37	9	137323807	137323807	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	92	914	1	ENST00000481739.1:c.1100T>C	p.Leu367Pro	p.L367P	ENST00000481739	NM_002957.4	367	cTg/cCg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	169	432	0	ENST00000361445.4:c.5930C>T	p.Thr1977Ile	p.T1977I	ENST00000361445	NM_004958.3	1977	aCa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	735	745	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801184	1801184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1558	433	833	1	ENST00000260795.2:c.313G>C	p.Gly105Arg	p.G105R	ENST00000260795		105	Ggg/Cgg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662128	227662128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	599	632	1	ENST00000305123.5:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000305123	NM_005544.2	443	Cgc/Tgc																																																																														
STK40	83931	MSKCC	GRCh37	1	36809525	36809525	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1638	333	684	0	ENST00000373129.3:c.940G>C	p.Asp314His	p.D314H	ENST00000373129	NM_032017.1	314	Gac/Cac																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716220	243716220	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	55	367	0	ENST00000263826.5:c.974G>C	p.Arg325Pro	p.R325P	ENST00000263826	NM_005465.4	325	cGa/cCa																																																																														
ATM	472	MSKCC	GRCh37	11	108128245	108128245	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	12	235	0	ENST00000278616.4:c.2288T>G	p.Phe763Cys	p.F763C	ENST00000278616	NM_000051.3	763	tTt/tGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348900	118348900	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	72	173	0	ENST00000534358.1:c.3553A>G	p.Lys1185Glu	p.K1185E	ENST00000534358	NM_005933.3	1185	Aag/Gag																																																																														
CBL	867	MSKCC	GRCh37	11	119144449	119144589	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTGAATTACGAGAATTGAAATTGGTATTGAGAGCTTAATGTGGCTCTCCTTCCTTTCCTTGATTATGGCGATGCCTGGAATTATCTCTGTTATTTCACTTTATGCCTCCTCTCCACCCCCTCCCCAGGACAATAGTCCC	TTTTGAATTACGAGAATTGAAATTGGTATTGAGAGCTTAATGTGGCTCTCCTTCCTTTCCTTGATTATGGCGATGCCTGGAATTATCTCTGTTATTTCACTTTATGCCTCCTCTCCACCCCCTCCCCAGGACAATAGTCCC	-			P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	57	54	0	ENST00000264033.4:c.591-127_604del		p.X197_splice	ENST00000264033	NM_005188.3	197																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871683	35871683	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	240	435	0	ENST00000216797.5:c.823G>C	p.Glu275Gln	p.E275Q	ENST00000216797	NM_020529.2	275	Gaa/Caa																																																																														
IDH2	3418	MSKCC	GRCh37	15	90633788	90633788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1241	123	601	0	ENST00000330062.3:c.296A>G	p.Asp99Gly	p.D99G	ENST00000330062	NM_002168.2	99	gAc/gGc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366888	15366890	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	115	456	0	ENST00000263377.2:c.1736_1738del	p.Ser579del	p.S579del	ENST00000263377	NM_058243.2	579	aGCAac/aac																																																																														
CIC	23152	MSKCC	GRCh37	19	42791003	42791003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	297	602	0	ENST00000575354.2:c.148G>C	p.Asp50His	p.D50H	ENST00000575354	NM_015125.3	50	Gac/Cac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562321	176562321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	117	469	0	ENST00000439151.2:c.217C>G	p.Arg73Gly	p.R73G	ENST00000439151	NM_022455.4	73	Cgg/Ggg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	129	297	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	40	195	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641750	23641750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	28	241	0	ENST00000261584.4:c.1725G>C	p.Trp575Cys	p.W575C	ENST00000261584	NM_024675.3	575	tgG/tgC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023633	27023634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGGCTC			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	43	379	0	ENST00000324856.7:c.741_747dup	p.Lys250ArgfsTer152	p.K250Rfs*152	ENST00000324856	NM_006015.4	247	gcc/gCCGGCTCcc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1611804	1611804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			855	55	573	0	ENST00000344749.5:c.1858G>C	p.Glu620Gln	p.E620Q	ENST00000344749	NM_001136139.2	620	Gag/Cag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180051057	180051057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			677	40	495	0	ENST00000261937.6:c.1426C>T	p.Arg476Trp	p.R476W	ENST00000261937	NM_182925.4	476	Cgg/Tgg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888285	112888285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	34	301	0	ENST00000351677.2:c.301C>T	p.Pro101Ser	p.P101S	ENST00000351677	NM_002834.3	101	Cct/Tct																																																																														
BRAF	673	MSKCC	GRCh37	7	140439656	140439656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	52	223	0	ENST00000288602.6:c.2083G>C	p.Glu695Gln	p.E695Q	ENST00000288602	NM_004333.4	695	Gag/Cag																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206728	36206728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			675	278	609	1	ENST00000300305.3:c.784C>T	p.Gln262Ter	p.Q262*	ENST00000300305		262	Cag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600398	10600398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			942	134	635	0	ENST00000171111.5:c.1457C>T	p.Ser486Leu	p.S486L	ENST00000171111	NM_203500.1	486	tCa/tTa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246527	41246527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			598	198	444	0	ENST00000357654.3:c.1021G>C	p.Asp341His	p.D341H	ENST00000357654	NM_007294.3	341	Gat/Cat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866626	37866626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			792	110	504	0	ENST00000269571.5:c.793G>A	p.Glu265Lys	p.E265K	ENST00000269571		265	Gag/Aag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265364	152265364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	33	316	0	ENST00000206249.3:c.817G>A	p.Asp273Asn	p.D273N	ENST00000206249	NM_000125.3	273	Gat/Aat																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982963	201982963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			735	41	560	0	ENST00000359651.3:c.812G>C	p.Arg271Thr	p.R271T	ENST00000359651		271	aGa/aCa																																																																														
MPL	4352	MSKCC	GRCh37	1	43812513	43812513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	48	416	0	ENST00000372470.3:c.1216C>G	p.Leu406Val	p.L406V	ENST00000372470	NM_005373.2	406	Ctg/Gtg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344696	118344696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	38	239	0	ENST00000534358.1:c.2822C>T	p.Ser941Phe	p.S941F	ENST00000534358	NM_005933.3	941	tCt/tTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820966	3820966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			557	78	453	0	ENST00000262367.5:c.2485C>G	p.Leu829Val	p.L829V	ENST00000262367	NM_004380.2	829	Ctt/Gtt																																																																														
NF1	4763	MSKCC	GRCh37	17	29554598	29554598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	71	164	0	ENST00000358273.4:c.2383C>T	p.Pro795Ser	p.P795S	ENST00000358273	NM_001042492.2	795	Cca/Tca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37876034	37876063	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCAGCTGTGTGGACCTGGATGACAAGGG	CTGCAGCTGTGTGGACCTGGATGACAAGGG	-			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			775	138	515	0	ENST00000269571.5:c.1899-2_1926del		p.X633_splice	ENST00000269571		633																																																																															
WT1	7490	MSKCC	GRCh37	11	32438087	32438087	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	87	392	0	ENST00000332351.3:c.951-1G>T		p.X317_splice	ENST00000332351	NM_024426.4	317																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118348714	118348714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	22	158	0	ENST00000534358.1:c.3367G>A	p.Glu1123Lys	p.E1123K	ENST00000534358	NM_005933.3	1123	Gaa/Aaa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240084	41240084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			67	11	37	0	ENST00000379561.5:c.266C>T	p.Ser89Phe	p.S89F	ENST00000379561	NM_002015.3	89	tCc/tTc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50828258	50828258	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	69	369	0	ENST00000398568.2:c.2596A>G	p.Thr866Ala	p.T866A	ENST00000398568	NM_001042412.1	866	Aca/Gca																																																																														
NUP93	9688	MSKCC	GRCh37	16	56873511	56873511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	112	233	0	ENST00000308159.5:c.2215G>A	p.Asp739Asn	p.D739N	ENST00000308159	NM_014669.4	739	Gat/Aat																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81962188	81962188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			724	74	329	0	ENST00000359376.3:c.2540C>G	p.Ser847Cys	p.S847C	ENST00000359376	NM_002661.3	847	tCt/tGt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627613	37627613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	76	387	0	ENST00000447079.4:c.1528G>A	p.Glu510Lys	p.E510K	ENST00000447079	NM_015083.1	510	Gag/Aag																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140144	50140144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			886	62	623	1	ENST00000246792.3:c.281G>T	p.Arg94Ile	p.R94I	ENST00000246792	NM_006270.3	94	aGa/aTa																																																																														
ALK	238	MSKCC	GRCh37	2	29416154	29416154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			597	44	427	0	ENST00000389048.3:c.4799G>A	p.Gly1600Glu	p.G1600E	ENST00000389048	NM_004304.4	1600	gGa/gAa																																																																														
AURKA	6790	MSKCC	GRCh37	20	54948521	54948521	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	38	259	0	ENST00000312783.6:c.797C>G	p.Ser266Ter	p.S266*	ENST00000312783	NM_198436.1	266	tCa/tGa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326798	62326798	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1353	82	788	0	ENST00000508582.2:c.3689C>G	p.Ser1230Ter	p.S1230*	ENST00000508582		1230	tCa/tGa																																																																														
EP300	2033	MSKCC	GRCh37	22	41527589	41527589	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	84	324	0	ENST00000263253.7:c.1480C>T	p.Gln494Ter	p.Q494*	ENST00000263253	NM_001429.3	494	Cag/Tag																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430267	181430267	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	39	426	0	ENST00000325404.1:c.119G>C	p.Arg40Pro	p.R40P	ENST00000325404	NM_003106.3	40	cGc/cCc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535319	66535319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			809	101	601	0	ENST00000273854.3:c.142G>T	p.Ala48Ser	p.A48S	ENST00000273854	NM_004439.5	48	Gcc/Tcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540391	187540391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	30	336	0	ENST00000441802.2:c.7349C>T	p.Ser2450Leu	p.S2450L	ENST00000441802	NM_005245.3	2450	tCa/tTa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564633	86564633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			937	66	698	0	ENST00000274376.6:c.365C>T	p.Ser122Leu	p.S122L	ENST00000274376	NM_002890.2	122	tCg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112090652	112090653	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	18	165	0	ENST00000257430.4:c.65_66del	p.Asn22ThrfsTer8	p.N22Tfs*8	ENST00000257430	NM_000038.5	22	aAT/a																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169985	32169985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			944	63	745	1	ENST00000375023.3:c.3623C>T	p.Pro1208Leu	p.P1208L	ENST00000375023	NM_004557.3	1208	cCa/cTa																																																																														
ABL1	25	MSKCC	GRCh37	9	133748385	133748385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	32	356	0	ENST00000318560.5:c.1046C>T	p.Ser349Leu	p.S349L	ENST00000318560	NM_005157.4	349	tCa/tTa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266512	198266512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	81	206	0	ENST00000335508.6:c.2324G>A	p.Arg775Gln	p.R775Q	ENST00000335508	NM_012433.2	775	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	160	502	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644406	18644406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	24	177	0	ENST00000266497.5:c.2584G>T	p.Gly862Cys	p.G862C	ENST00000266497		862	Ggc/Tgc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46597559	46597560	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0048500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	71	285	0	ENST00000262741.5:c.65dup	p.Tyr22Ter	p.Y22*	ENST00000262741	NM_003629.3	22	tat/taAt																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845413	42845455	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCCCGCAGGCTGAGGATGACAAACAGGAGGCCAGTGGGGTG	GACCCCGCAGGCTGAGGATGACAAACAGGAGGCCAGTGGGGTG	-			P-0048500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	106	527	0	ENST00000398585.3:c.839-32_849del		p.X280_splice	ENST00000398585	NM_001135099.1	280																																																																															
MGA	23269	MSKCC	GRCh37	15	42042713	42042726	+	frameshift_variant	Frame_Shift_Del	DEL	AAGATGATGAAGAT	AAGATGATGAAGAT	-			P-0048507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	72	336	0	ENST00000219905.7:c.6908_6921del	p.Glu2303GlyfsTer2	p.E2303Gfs*2	ENST00000219905	NM_001164273.1	2303	gAAGATGATGAAGAT/g																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251763	212251763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	24	257	1	ENST00000342788.4:c.3296C>A	p.Ala1099Asp	p.A1099D	ENST00000342788	NM_005235.2	1099	gCt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	94	487	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	55	263	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729984	41729984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	111	499	1	ENST00000242208.4:c.545C>T	p.Pro182Leu	p.P182L	ENST00000242208	NM_002192.2	182	cCg/cTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965472	68965472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200682883		P-0048512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	70	412	0	ENST00000288368.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000288368	NM_024870.2	362	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	454	669	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175687	112175687	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	187	215	0	ENST00000257430.4:c.4396G>T	p.Gly1466Ter	p.G1466*	ENST00000257430	NM_000038.5	1466	Gga/Tga																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7989345	7989345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	427	750	0	ENST00000319144.4:c.341G>A	p.Arg114Gln	p.R114Q	ENST00000319144	NM_001139.2	114	cGg/cAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29665777	29665777	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	10	153	0	ENST00000358273.4:c.6875A>G	p.Glu2292Gly	p.E2292G	ENST00000358273	NM_001042492.2	2292	gAa/gGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860449	151860449	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	375	432	1	ENST00000262189.6:c.10213C>T	p.Arg3405Ter	p.R3405*	ENST00000262189	NM_170606.2	3405	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21969825	21970847	+	intron_variant	Intron	DEL	GGGCCGAGTAAAGAAGAACTTCGCGTCTTTAACTTCGAAGGTGATTTTGCGTTCTGTATTTACAGCATCTCCAAGCAGAGGGCTTAGAGCTAACTCTTCACCCTGTCCTCCCCAGCTCCCCTATGGCCCAAGGAGCCCAATGCCCCCGTTCTGGGCCAAAATAAGATGGATTTCATAATCTTCAAGGTCATGTTTTACCTTAAATATTCGTGTTAATTCCCGTGTACTGTTTCATATATCTATTTTGTTTCAAAAAAAAATGTTCCTCCCCCCAGAAACAATTGAGTAATGTTGGCAGTTTCAGCAGACAGCTGTGGGAGTAGGGAACTGGGGCCATGGAATGGGGGCGGAGGGAGGATGCTTTGAGATCACAAAAAGGAAAGGCAAGGGCAAGGAGGACCATAATTCTACCTTCATCGCTCAGCGATCTCTTGCACAAGTTTAAGAGGGAAAGGAGCCAACTCCGGTGCACAGACTGCCAGGGTCAGCGAAGTCTTGGTCCTGATGTCCCCAGAACCCCCTGGGGCAGCTCTGGAAAACTCTACCGCATAAAGCGGAGGGTCAGATTAGCTGAGGAGGGTCAGATTAGTTGAGTTGTGCAGAAGAGCCGAGATCGAGAGATCTCCAGATGATGCCACGCACAATTGGGTTTGGAAATCCTGAGGTTGGTCCAGCCAGCTTGGTATGCAAATGAGGAAACAGACCTGGTAAGTGGATGCAACTGGCCCTAGTTTGGAGGAAGAGGGGGCACTAGACCTCTAGCCTCTTGAGTCTTCATTGCTCCGCAGTCTAGGCCTTGAACTAGCAGAGGGTAGGTGTTTGGGTGGTGGTATGCTTTGGGAAGTATAATGTACAAAATGGGCTTTCACGTGCGCAAGTCCATTTCGGGATTATTTCCCATTTGCCGCCCTGGCGGGGCAGGGCGATAGGGAGACTCAGGCCGTCCCACCGATTGGCGCGTGAGCTGAGGCAAGACCGGAGACTGGTCTCCCGGGCTGAACTTTCTGTGCTGGAAAATGAATG	GGGCCGAGTAAAGAAGAACTTCGCGTCTTTAACTTCGAAGGTGATTTTGCGTTCTGTATTTACAGCATCTCCAAGCAGAGGGCTTAGAGCTAACTCTTCACCCTGTCCTCCCCAGCTCCCCTATGGCCCAAGGAGCCCAATGCCCCCGTTCTGGGCCAAAATAAGATGGATTTCATAATCTTCAAGGTCATGTTTTACCTTAAATATTCGTGTTAATTCCCGTGTACTGTTTCATATATCTATTTTGTTTCAAAAAAAAATGTTCCTCCCCCCAGAAACAATTGAGTAATGTTGGCAGTTTCAGCAGACAGCTGTGGGAGTAGGGAACTGGGGCCATGGAATGGGGGCGGAGGGAGGATGCTTTGAGATCACAAAAAGGAAAGGCAAGGGCAAGGAGGACCATAATTCTACCTTCATCGCTCAGCGATCTCTTGCACAAGTTTAAGAGGGAAAGGAGCCAACTCCGGTGCACAGACTGCCAGGGTCAGCGAAGTCTTGGTCCTGATGTCCCCAGAACCCCCTGGGGCAGCTCTGGAAAACTCTACCGCATAAAGCGGAGGGTCAGATTAGCTGAGGAGGGTCAGATTAGTTGAGTTGTGCAGAAGAGCCGAGATCGAGAGATCTCCAGATGATGCCACGCACAATTGGGTTTGGAAATCCTGAGGTTGGTCCAGCCAGCTTGGTATGCAAATGAGGAAACAGACCTGGTAAGTGGATGCAACTGGCCCTAGTTTGGAGGAAGAGGGGGCACTAGACCTCTAGCCTCTTGAGTCTTCATTGCTCCGCAGTCTAGGCCTTGAACTAGCAGAGGGTAGGTGTTTGGGTGGTGGTATGCTTTGGGAAGTATAATGTACAAAATGGGCTTTCACGTGCGCAAGTCCATTTCGGGATTATTTCCCATTTGCCGCCCTGGCGGGGCAGGGCGATAGGGAGACTCAGGCCGTCCCACCGATTGGCGCGTGAGCTGAGGCAAGACCGGAGACTGGTCTCCCGGGCTGAACTTTCTGTGCTGGAAAATGAATG	-			P-0048513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	240	0	0	ENST00000304494.5:c.457+55_457+1077del		p.*153*	ENST00000304494	NM_000077.4																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21969825	21970847	+	intron_variant	Intron	DEL	GGGCCGAGTAAAGAAGAACTTCGCGTCTTTAACTTCGAAGGTGATTTTGCGTTCTGTATTTACAGCATCTCCAAGCAGAGGGCTTAGAGCTAACTCTTCACCCTGTCCTCCCCAGCTCCCCTATGGCCCAAGGAGCCCAATGCCCCCGTTCTGGGCCAAAATAAGATGGATTTCATAATCTTCAAGGTCATGTTTTACCTTAAATATTCGTGTTAATTCCCGTGTACTGTTTCATATATCTATTTTGTTTCAAAAAAAAATGTTCCTCCCCCCAGAAACAATTGAGTAATGTTGGCAGTTTCAGCAGACAGCTGTGGGAGTAGGGAACTGGGGCCATGGAATGGGGGCGGAGGGAGGATGCTTTGAGATCACAAAAAGGAAAGGCAAGGGCAAGGAGGACCATAATTCTACCTTCATCGCTCAGCGATCTCTTGCACAAGTTTAAGAGGGAAAGGAGCCAACTCCGGTGCACAGACTGCCAGGGTCAGCGAAGTCTTGGTCCTGATGTCCCCAGAACCCCCTGGGGCAGCTCTGGAAAACTCTACCGCATAAAGCGGAGGGTCAGATTAGCTGAGGAGGGTCAGATTAGTTGAGTTGTGCAGAAGAGCCGAGATCGAGAGATCTCCAGATGATGCCACGCACAATTGGGTTTGGAAATCCTGAGGTTGGTCCAGCCAGCTTGGTATGCAAATGAGGAAACAGACCTGGTAAGTGGATGCAACTGGCCCTAGTTTGGAGGAAGAGGGGGCACTAGACCTCTAGCCTCTTGAGTCTTCATTGCTCCGCAGTCTAGGCCTTGAACTAGCAGAGGGTAGGTGTTTGGGTGGTGGTATGCTTTGGGAAGTATAATGTACAAAATGGGCTTTCACGTGCGCAAGTCCATTTCGGGATTATTTCCCATTTGCCGCCCTGGCGGGGCAGGGCGATAGGGAGACTCAGGCCGTCCCACCGATTGGCGCGTGAGCTGAGGCAAGACCGGAGACTGGTCTCCCGGGCTGAACTTTCTGTGCTGGAAAATGAATG	GGGCCGAGTAAAGAAGAACTTCGCGTCTTTAACTTCGAAGGTGATTTTGCGTTCTGTATTTACAGCATCTCCAAGCAGAGGGCTTAGAGCTAACTCTTCACCCTGTCCTCCCCAGCTCCCCTATGGCCCAAGGAGCCCAATGCCCCCGTTCTGGGCCAAAATAAGATGGATTTCATAATCTTCAAGGTCATGTTTTACCTTAAATATTCGTGTTAATTCCCGTGTACTGTTTCATATATCTATTTTGTTTCAAAAAAAAATGTTCCTCCCCCCAGAAACAATTGAGTAATGTTGGCAGTTTCAGCAGACAGCTGTGGGAGTAGGGAACTGGGGCCATGGAATGGGGGCGGAGGGAGGATGCTTTGAGATCACAAAAAGGAAAGGCAAGGGCAAGGAGGACCATAATTCTACCTTCATCGCTCAGCGATCTCTTGCACAAGTTTAAGAGGGAAAGGAGCCAACTCCGGTGCACAGACTGCCAGGGTCAGCGAAGTCTTGGTCCTGATGTCCCCAGAACCCCCTGGGGCAGCTCTGGAAAACTCTACCGCATAAAGCGGAGGGTCAGATTAGCTGAGGAGGGTCAGATTAGTTGAGTTGTGCAGAAGAGCCGAGATCGAGAGATCTCCAGATGATGCCACGCACAATTGGGTTTGGAAATCCTGAGGTTGGTCCAGCCAGCTTGGTATGCAAATGAGGAAACAGACCTGGTAAGTGGATGCAACTGGCCCTAGTTTGGAGGAAGAGGGGGCACTAGACCTCTAGCCTCTTGAGTCTTCATTGCTCCGCAGTCTAGGCCTTGAACTAGCAGAGGGTAGGTGTTTGGGTGGTGGTATGCTTTGGGAAGTATAATGTACAAAATGGGCTTTCACGTGCGCAAGTCCATTTCGGGATTATTTCCCATTTGCCGCCCTGGCGGGGCAGGGCGATAGGGAGACTCAGGCCGTCCCACCGATTGGCGCGTGAGCTGAGGCAAGACCGGAGACTGGTCTCCCGGGCTGAACTTTCTGTGCTGGAAAATGAATG	-			P-0048513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	240	0	0	ENST00000304494.5:c.457+55_457+1077del		p.*153*	ENST00000304494	NM_000077.4																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	52	233	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	88	425	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0048516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	88	225	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	156	527	1	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	87	365	0	ENST00000361445.4:c.5930C>T	p.Thr1977Ile	p.T1977I	ENST00000361445	NM_004958.3	1977	aCa/aTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42042709	42042710	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0048516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	63	257	0	ENST00000219905.7:c.6904_6905del	p.Glu2302ArgfsTer3	p.E2302Rfs*3	ENST00000219905	NM_001164273.1	2302	GAa/a																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151621	55151621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	123	400	1	ENST00000257290.5:c.2407G>T	p.Ala803Ser	p.A803S	ENST00000257290	NM_006206.4	803	Gcc/Tcc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099429	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAACAG	CAGCAGCAGCAGCAGCAGCAGCAACAG	-	rs910569810		P-0048539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	88	275	0	ENST00000346085.5:c.360_386del	p.Gln123_Gln131del	p.Q123_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAACAG/-																																																																														
MET	4233	MSKCC	GRCh37	7	116409810	116409810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	101	209	0	ENST00000397752.3:c.2695G>A	p.Asp899Asn	p.D899N	ENST00000397752	NM_000245.2	899	Gac/Aac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535424	66535424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	147	288	1	ENST00000273854.3:c.37C>T	p.Arg13Trp	p.R13W	ENST00000273854	NM_004439.5	13	Cgg/Tgg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32814895	32814895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	344	693	0	ENST00000354258.4:c.2170C>T	p.Leu724Phe	p.L724F	ENST00000354258	NM_000593.5	724	Ctt/Ttt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93953166	93953166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	66	227	0	ENST00000369303.4:c.2975A>G	p.His992Arg	p.H992R	ENST00000369303	NM_004440.3	992	cAt/cGt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137033	64137033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	111	597	1	ENST00000334205.4:c.1544C>T	p.Ser515Leu	p.S515L	ENST00000334205	NM_003942.2	515	tCg/tTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0048547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	163	340	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593640	55593660	+	inframe_deletion	In_Frame_Del	DEL	TTTACATAGACCCAACACAAC	TTTACATAGACCCAACACAAC	-			P-0048547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	145	362	0	ENST00000288135.5:c.1708_1728delTACATAGACCCAACACAACTT	p.Tyr570_Leu576del	p.Y570_L576del	ENST00000288135	NM_000222.2	569	gTTTACATAGACCCAACACAACtt/gtt																																																																														
MGA	23269	MSKCC	GRCh37	15	42042453	42042454	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0048547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	158	365	2	ENST00000219905.7:c.6648_6649delinsTT	p.Gln2216_Gln2217delinsHisTer	p.Q2216_Q2217delinsH*	ENST00000219905	NM_001164273.1	2216	caGCaa/caTTaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	10	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631302	117631302	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138376257		P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	223	403	0	ENST00000368508.3:c.6376C>T	p.Arg2126Trp	p.R2126W	ENST00000368508	NM_002944.2	2126	Cgg/Tgg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	699	557	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857524	9857524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	132	465	0	ENST00000330684.3:c.3877G>A	p.Asp1293Asn	p.D1293N	ENST00000330684	NM_001134407.1	1293	Gat/Aat																																																																														
PAK7	0	MSKCC	GRCh37	20	9523319	9523319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	212	507	1	ENST00000353224.5:c.1918G>A	p.Glu640Lys	p.E640K	ENST00000353224	NM_177990.2	640	Gag/Aag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458690	120458690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	222	562	0	ENST00000256646.2:c.6655C>T	p.Pro2219Ser	p.P2219S	ENST00000256646	NM_024408.3	2219	Ccc/Tcc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104375086	104375086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs36049457		P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	268	639	0	ENST00000369902.3:c.1084C>T	p.Arg362Cys	p.R362C	ENST00000369902	NM_016169.3	362	Cgc/Tgc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68999979	68999979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	209	601	0	ENST00000288368.4:c.2048C>T	p.Ser683Leu	p.S683L	ENST00000288368	NM_024870.2	683	tCa/tTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484270	8484270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	307	442	0	ENST00000356435.5:c.3262C>T	p.Arg1088Cys	p.R1088C	ENST00000356435		1088	Cgt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285570	46285570	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs78222561		P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	114	286	0	ENST00000334344.6:c.4930C>T	p.Gln1644Ter	p.Q1644*	ENST00000334344	NM_152641.2	1644	Cag/Tag																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675097	40675097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	153	916	1	ENST00000249776.8:c.61G>A	p.Glu21Lys	p.E21K	ENST00000249776	NM_033286.3	21	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258956	153258956	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	77	223	0	ENST00000281708.4:c.859G>A	p.Glu287Lys	p.E287K	ENST00000281708	NM_033632.3	287	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	35	368	0				ENST00000310581	NM_198253.2																																																																																
PMS2	5395	MSKCC	GRCh37	7	6026897	6026897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	156	300	0	ENST00000265849.7:c.1499C>T	p.Ser500Phe	p.S500F	ENST00000265849	NM_000535.5	500	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16263761	16263762	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	203	614	1	ENST00000375759.3:c.10130_10131delinsTT	p.Pro3377Leu	p.P3377L	ENST00000375759	NM_015001.2	3377	cCC/cTT																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115266537	115266537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	638	561	0	ENST00000438362.2:c.1978G>A	p.Glu660Lys	p.E660K	ENST00000438362	NM_001242891.1	660	Gag/Aag																																																																														
WT1	7490	MSKCC	GRCh37	11	32449559	32449559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138073760		P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	380	1018	0	ENST00000332351.3:c.815C>T	p.Thr272Ile	p.T272I	ENST00000332351	NM_024426.4	272	aCc/aTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719918	18719918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	111	425	0	ENST00000266497.5:c.3815C>T	p.Ser1272Leu	p.S1272L	ENST00000266497		1272	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446115	49446115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	410	876	0	ENST00000301067.7:c.1351C>T	p.Pro451Ser	p.P451S	ENST00000301067	NM_003482.3	451	Cca/Tca																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562696	21562696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	222	657	0	ENST00000382592.4:c.1223C>T	p.Ser408Phe	p.S408F	ENST00000382592	NM_014572.2	408	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857238	9857238	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	297	586	1	ENST00000330684.3:c.4163A>T	p.Lys1388Ile	p.K1388I	ENST00000330684	NM_001134407.1	1388	aAa/aTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943638	9943638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	225	622	2	ENST00000330684.3:c.1303C>T	p.Pro435Ser	p.P435S	ENST00000330684	NM_001134407.1	435	Cca/Tca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974904	15974904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	81	451	0	ENST00000268712.3:c.3971C>T	p.Pro1324Leu	p.P1324L	ENST00000268712	NM_006311.3	1324	cCc/cTc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761433	59761433	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	145	434	0	ENST00000259008.2:c.2974A>G	p.Thr992Ala	p.T992A	ENST00000259008	NM_032043.2	992	Act/Gct																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141491	11141492	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	269	775	2	ENST00000344626.4:c.3468_3469delinsTT	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1156	acCCgg/acTTgg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967140	25967140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	107	541	0	ENST00000435504.4:c.2066C>T	p.Thr689Ile	p.T689I	ENST00000435504		689	aCc/aTc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61720189	61720189	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	64	264	0	ENST00000401558.2:c.1246-1G>T		p.X416_splice	ENST00000401558	NM_003400.3	416																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096236	178096236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	211	453	0	ENST00000397062.3:c.1095C>A	p.Ser365Arg	p.S365R	ENST00000397062	NM_006164.4	365	agC/agA																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332921	153332921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	188	340	0	ENST00000281708.4:c.35G>A	p.Arg12Lys	p.R12K	ENST00000281708	NM_033632.3	12	aGa/aAa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911479	131911479	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	109	275	0	ENST00000265335.6:c.224A>G	p.Glu75Gly	p.E75G	ENST00000265335		75	gAa/gGa																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858479	27858479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	217	516	0	ENST00000359303.2:c.92C>T	p.Pro31Leu	p.P31L	ENST00000359303	NM_003535.2	31	cCa/cTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709044	117709053	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGGTACAT	TCAGGTACAT	-			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	115	528	0	ENST00000368508.3:c.1904_1913del	p.Asn635SerfsTer6	p.N635Sfs*6	ENST00000368508	NM_002944.2	635	aATGTACCTGAg/ag																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997819	149997819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	120	540	0	ENST00000253339.5:c.2648C>T	p.Ser883Leu	p.S883L	ENST00000253339		883	tCa/tTa																																																																														
MET	4233	MSKCC	GRCh37	7	116340153	116340153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	125	249	0	ENST00000397752.3:c.1015G>A	p.Asp339Asn	p.D339N	ENST00000397752	NM_000245.2	339	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0048551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	533	833	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
APC	324	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	17	205	0	ENST00000257430.4:c.3980C>A	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112175322	112175322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	18	176	0	ENST00000257430.4:c.4031C>T	p.Ser1344Leu	p.S1344L	ENST00000257430	NM_000038.5	1344	tCa/tTa																																																																														
APC	324	MSKCC	GRCh37	5	112175262	112175262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	16	209	0	ENST00000257430.4:c.3971C>T	p.Pro1324Leu	p.P1324L	ENST00000257430	NM_000038.5	1324	cCa/cTa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668821	52668821	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0048551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	183	249	0	ENST00000394830.3:c.1098T>G	p.Tyr366Ter	p.Y366*	ENST00000394830	NM_018313.4	366	taT/taG																																																																														
KDR	3791	MSKCC	GRCh37	4	55973136	55973991	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGACAATGAAGGAAAAGGTTCTAGGTAGATTCATTCAGGATACAGGAGGGAAGCAGCTATTCTGGGAATAAACCTTCATTCATAAATTGGATCGACAAGACAATTCAAGTTAATTTAGTTCAAAGGAAGGCAAGGAAACTTAGAAGCCACTGGGCTCCTTAAAGTAATTTCTCTGGGACCATGGTCTCTGTGAAGGAAATGATCAGCAGCTGAGGAAGAAGCTCATAGTGGCCATTTCAAAAACAACAACAGGAAGTGGACTGCTTAGGGTGGTGGTGGGTTGGCTGCTGTTGTTGTGTTTTTCCCTAAGGATGTCTGGACTTGTGTCAGAGCATGATAAGCTGGGCCTGAGACCCTGAGGACTGGGGCTGGGTCTATCACTGCCTCTCATCTATCAGCATTTCCTCTGAGAGATGGATCTTCACACACACAAGAAGGAGGGATGTGGTATTCACCAGCCGATTGGTATCGGGAGAAAAACCAAAGACTGGCAATTAGCAAACTGAGCAAATAGCCTGTGTTTGGAGAAGTGTACCTCACGGCTAACCTAACAAGGCTGAGCTTAGCTAACCCCAAAGGAGGATACTCCAAGCAAAGACATCCCCTAAAATGTAAGACACAGAGAAAGATGGATGGAGATTCAGGCTACCTCTTGAGAGAAAACTTTTTTTGGTTTAGGCTTCTCCATTTAGGATGGAGTCATATCATAGCTCAGCTGTAAGAAATGCAAGATGGCAGGAAAGCAAAGAGCATGTGGCCTTACTCACCTGGGCTCGTTGGCGCACTCTTCCTCCAACTGCCAATACCAGTGGATGTGATGCGGGGGAGGAATGGCATAGACCGTACATGTCAGCG	TTGACAATGAAGGAAAAGGTTCTAGGTAGATTCATTCAGGATACAGGAGGGAAGCAGCTATTCTGGGAATAAACCTTCATTCATAAATTGGATCGACAAGACAATTCAAGTTAATTTAGTTCAAAGGAAGGCAAGGAAACTTAGAAGCCACTGGGCTCCTTAAAGTAATTTCTCTGGGACCATGGTCTCTGTGAAGGAAATGATCAGCAGCTGAGGAAGAAGCTCATAGTGGCCATTTCAAAAACAACAACAGGAAGTGGACTGCTTAGGGTGGTGGTGGGTTGGCTGCTGTTGTTGTGTTTTTCCCTAAGGATGTCTGGACTTGTGTCAGAGCATGATAAGCTGGGCCTGAGACCCTGAGGACTGGGGCTGGGTCTATCACTGCCTCTCATCTATCAGCATTTCCTCTGAGAGATGGATCTTCACACACACAAGAAGGAGGGATGTGGTATTCACCAGCCGATTGGTATCGGGAGAAAAACCAAAGACTGGCAATTAGCAAACTGAGCAAATAGCCTGTGTTTGGAGAAGTGTACCTCACGGCTAACCTAACAAGGCTGAGCTTAGCTAACCCCAAAGGAGGATACTCCAAGCAAAGACATCCCCTAAAATGTAAGACACAGAGAAAGATGGATGGAGATTCAGGCTACCTCTTGAGAGAAAACTTTTTTTGGTTTAGGCTTCTCCATTTAGGATGGAGTCATATCATAGCTCAGCTGTAAGAAATGCAAGATGGCAGGAAAGCAAAGAGCATGTGGCCTTACTCACCTGGGCTCGTTGGCGCACTCTTCCTCCAACTGCCAATACCAGTGGATGTGATGCGGGGGAGGAATGGCATAGACCGTACATGTCAGCG	-			P-0048551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	21	57	0	ENST00000263923.4:c.1325_1413-159del		p.X442_splice	ENST00000263923	NM_002253.2	442																																																																															
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	14	205	0	ENST00000257430.4:c.3944C>T	p.Ser1315Leu	p.S1315L	ENST00000257430	NM_000038.5	1315	tCa/tTa																																																																														
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	17	251	0	ENST00000257430.4:c.4330C>G	p.Gln1444Glu	p.Q1444E	ENST00000257430	NM_000038.5	1444	Caa/Gaa																																																																														
APC	324	MSKCC	GRCh37	5	112176054	112176054	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	24	238	0	ENST00000257430.4:c.4763C>G	p.Ser1588Ter	p.S1588*	ENST00000257430	NM_000038.5	1588	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112176564	112176564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	21	186	0	ENST00000257430.4:c.5273C>A	p.Ser1758Tyr	p.S1758Y	ENST00000257430	NM_000038.5	1758	tCt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112177370	112177370	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	18	223	0	ENST00000257430.4:c.6079C>G	p.Leu2027Val	p.L2027V	ENST00000257430	NM_000038.5	2027	Ctc/Gtc																																																																														
APC	324	MSKCC	GRCh37	5	112177751	112177751	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	12	221	0	ENST00000257430.4:c.6460C>G	p.Gln2154Glu	p.Q2154E	ENST00000257430	NM_000038.5	2154	Caa/Gaa																																																																														
APC	324	MSKCC	GRCh37	5	112178084	112178084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	24	278	0	ENST00000257430.4:c.6793C>G	p.Gln2265Glu	p.Q2265E	ENST00000257430	NM_000038.5	2265	Caa/Gaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	10	294	1	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	458	789	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70355027	70355027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	81	687	0	ENST00000374080.3:c.4949C>A	p.Thr1650Lys	p.T1650K	ENST00000374080		1650	aCg/aAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	83	353	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482864	67482864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	265	489	0	ENST00000327367.4:c.1268G>T	p.Ser423Ile	p.S423I	ENST00000327367	NM_005902.3	423	aGt/aTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0048558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	102	230	0	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0048558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	102	230	0	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444216	49444216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	195	939	0	ENST00000301067.7:c.3155C>T	p.Pro1052Leu	p.P1052L	ENST00000301067	NM_003482.3	1052	cCc/cTc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383273	42383274	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	88	665	0	ENST00000221972.3:c.295_296del	p.Ser99ProfsTer82	p.S99Pfs*82	ENST00000221972	NM_021601.3	98	aAG/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0048559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	248	497	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																														
NUF2	83540	MSKCC	GRCh37	1	163298638	163298638	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0048559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	92	491	0	ENST00000271452.3:c.278A>G	p.Asp93Gly	p.D93G	ENST00000271452	NM_145697.2	93	gAc/gGc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36421157	36421157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	40	265	0	ENST00000300305.3:c.40C>T	p.Pro14Ser	p.P14S	ENST00000300305		14	Cca/Tca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	197	246	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	609	649	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	225	262	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023471	27023471	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	308	512	1	ENST00000324856.7:c.577G>T	p.Glu193Ter	p.E193*	ENST00000324856	NM_006015.4	193	Gag/Tag																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137527428	137527428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	63	199	0	ENST00000367739.4:c.218G>A	p.Trp73Ter	p.W73*	ENST00000367739	NM_000416.2	73	tGg/tAg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879854	37879854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1260	547	659	0	ENST00000269571.5:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000269571		717	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922884	44922884	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	334	394	0	ENST00000377967.4:c.1745C>G	p.Ser582Ter	p.S582*	ENST00000377967	NM_021140.2	582	tCa/tGa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187519244	187519245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	274	369	0	ENST00000441802.2:c.12138dup	p.Thr4047AspfsTer4	p.T4047Dfs*4	ENST00000441802	NM_005245.3	4046	-/G																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863449	57863449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	451	509	1	ENST00000228682.2:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000228682	NM_005269.2	515	cGg/cAg																																																																														
RB1	5925	MSKCC	GRCh37	13	48955381	48955381	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	51	146	0	ENST00000267163.4:c.1499-2A>G		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																															
DAXX	1616	MSKCC	GRCh37	6	33289085	33289085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	555	584	1	ENST00000374542.5:c.467C>T	p.Ser156Phe	p.S156F	ENST00000374542	NM_001141970.1	156	tCt/tTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859595	151859595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	304	382	0	ENST00000262189.6:c.11067C>G	p.Phe3689Leu	p.F3689L	ENST00000262189	NM_170606.2	3689	ttC/ttG																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941061	36941061	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	550	658	0	ENST00000361632.4:c.278A>G	p.Asn93Ser	p.N93S	ENST00000361632		93	aAc/aGc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30194802	30194802	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	175	447	1	ENST00000331968.5:c.343C>T	p.Gln115Ter	p.Q115*	ENST00000331968	NM_002742.2	115	Cag/Tag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59934566	59934566	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	136	201	0	ENST00000259008.2:c.232G>C	p.Glu78Gln	p.E78Q	ENST00000259008	NM_032043.2	78	Gaa/Caa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153252004	153252005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	70	297	0	ENST00000281708.4:c.1001dup	p.Leu334PhefsTer29	p.L334Ffs*29	ENST00000281708	NM_033632.3	334	ttg/ttTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55220252	55220252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	567	606	0	ENST00000275493.2:c.642C>G	p.Ile214Met	p.I214M	ENST00000275493	NM_005228.3	214	atC/atG																																																																														
AR	367	MSKCC	GRCh37	X	66937463	66937463	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	353	411	0	ENST00000374690.3:c.2317G>A	p.Glu773Lys	p.E773K	ENST00000374690	NM_000044.3	773	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76845349	76845349	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	95	286	0	ENST00000373344.5:c.6172A>G	p.Ser2058Gly	p.S2058G	ENST00000373344	NM_000489.3	2058	Agt/Ggt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061207	38061207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	40	532	1	ENST00000250448.2:c.782G>A	p.Arg261His	p.R261H	ENST00000250448	NM_004496.3	261	cGc/cAc																																																																														
CDH1	999	MSKCC	GRCh37	16	68867274	68867274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	52	681	0	ENST00000261769.5:c.2521G>A	p.Glu841Lys	p.E841K	ENST00000261769	NM_004360.3	841	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0048608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	136	685	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	66	558	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112175199	112175199	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	62	276	0	ENST00000257430.4:c.3910del	p.Ile1304Ter	p.I1304*	ENST00000257430	NM_000038.5	1303	cAa/ca																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9776562	9776562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	84	767	0	ENST00000377346.4:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000377346	NM_005026.3	222	cGg/cAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045136	47045136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	123	607	1	ENST00000329236.7:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000329236	NM_001204466.1	715	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	144	373	0				ENST00000310581	NM_198253.2																																																																																
MYCL	4610	MSKCC	GRCh37	1	40363380	40363380	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	106	772	0	ENST00000397332.2:c.849G>C	p.Glu283Asp	p.E283D	ENST00000397332	NM_001033082.2	283	gaG/gaC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827483	72827495	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTGATGCCAC	TACTTGATGCCAC	-			P-0048612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	76	859	1	ENST00000268489.5:c.9086_9098del	p.Cys3029SerfsTer43	p.C3029Sfs*43	ENST00000268489	NM_006885.3	3029	tGTGGCATCAAGTAc/tc																																																																														
VHL	7428	MSKCC	GRCh37	3	10188207	10188208	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0048612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	64	636	1	ENST00000256474.2:c.350_351delinsCT	p.Trp117Ser	p.W117S	ENST00000256474	NM_000551.3	117	tGG/tCT																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584442	52584443	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGTGTGT			P-0048612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	34	576	0	ENST00000394830.3:c.4570_4571insACACACAC	p.Leu1524HisfsTer26	p.L1524Hfs*26	ENST00000394830	NM_018313.4	1524	ctg/cACACACACtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	177	655	0	ENST00000269305.4:c.774A>C	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaC																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224165	36224165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	58	587	0	ENST00000222270.7:c.6715C>G	p.Leu2239Val	p.L2239V	ENST00000222270	NM_014727.1	2239	Ctc/Gtc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89444996	89444996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	30	393	0	ENST00000336596.2:c.1316C>G	p.Pro439Arg	p.P439R	ENST00000336596	NM_005233.5	439	cCt/cGt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189850	66189850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	76	481	0	ENST00000273854.3:c.3096C>A	p.Asn1032Lys	p.N1032K	ENST00000273854	NM_004439.5	1032	aaC/aaA																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129198	152129198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	171	630	0	ENST00000206249.3:c.151G>A	p.Val51Met	p.V51M	ENST00000206249	NM_000125.3	51	Gtg/Atg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152420046	152420046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	48	558	0	ENST00000206249.3:c.1733C>T	p.Ser578Phe	p.S578F	ENST00000206249	NM_000125.3	578	tCc/tTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	74	419	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0048613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	10	26	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	220	434	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	160	419	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061450	38061450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	180	568	1	ENST00000250448.2:c.539C>T	p.Thr180Ile	p.T180I	ENST00000250448	NM_004496.3	180	aCc/aTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404767	404767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	242	557	0	ENST00000399788.2:c.4427C>T	p.Ser1476Phe	p.S1476F	ENST00000399788	NM_001042603.1	1476	tCt/tTt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43720342	43720342	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	281	581	0	ENST00000382044.4:c.3700C>T	p.Gln1234Ter	p.Q1234*	ENST00000382044	NM_001141980.1	1234	Cag/Tag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348337	89348337	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	252	911	0	ENST00000301030.4:c.4613C>G	p.Ala1538Gly	p.A1538G	ENST00000301030	NM_001256183.1	1538	gCa/gGa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160644	56160644	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	248	375	0	ENST00000399503.3:c.919delC	p.Arg307ValfsTer5	p.R307Vfs*5	ENST00000399503	NM_005921.1	306	cgC/cg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178466	56178466	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	237	392	0	ENST00000399503.3:c.3439del	p.Val1147Ter	p.V1147*	ENST00000399503	NM_005921.1	1147	Gta/ta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0028057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	302	763	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
SDHA	6389	MSKCC	GRCh37	5	251542	251542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200397144		P-0028057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			625	108	580	2	ENST00000264932.6:c.1753C>T	p.Arg585Trp	p.R585W	ENST00000264932	NM_004168.2	585	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76875920	76875920	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	254	295	2	ENST00000373344.5:c.5215C>T	p.Arg1739Ter	p.R1739*	ENST00000373344	NM_000489.3	1739	Cga/Tga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180036917	180036917	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	173	716	1	ENST00000261937.6:c.3795C>A	p.Tyr1265Ter	p.Y1265*	ENST00000261937	NM_182925.4	1265	taC/taA																																																																														
TET2	54790	MSKCC	GRCh37	4	106157752	106157752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	81	398	0	ENST00000380013.4:c.2653G>A	p.Glu885Lys	p.E885K	ENST00000380013	NM_001127208.2	885	Gaa/Aaa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729606	41729606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			563	382	566	0	ENST00000242208.4:c.923G>A	p.Arg308His	p.R308H	ENST00000242208	NM_002192.2	308	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578505	7578512	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCAGGT	GGGCAGGT	-			P-0047470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	919	1009	0	ENST00000269305.4:c.418_425del	p.Thr140CysfsTer6	p.T140Cfs*6	ENST00000269305	NM_001126112.2	140	ACCTGCCCt/t																																																																														
POLE	5426	MSKCC	GRCh37	12	133254002	133254002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	466	463	0	ENST00000320574.5:c.748G>A	p.Gly250Arg	p.G250R	ENST00000320574	NM_006231.2	250	Gga/Aga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647459	117647459	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	94	357	0	ENST00000368508.3:c.5485A>G	p.Arg1829Gly	p.R1829G	ENST00000368508	NM_002944.2	1829	Aga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	42	378	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			493	158	910	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799817	72799817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	70	485	0	ENST00000325599.8:c.1352G>T	p.Ser451Ile	p.S451I	ENST00000325599	NM_018130.2	451	aGc/aTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481418	140481418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	36	352	0	ENST00000288602.6:c.1390G>A	p.Gly464Arg	p.G464R	ENST00000288602	NM_004333.4	464	Gga/Aga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390153	89390153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	38	275	0	ENST00000336596.2:c.902C>A	p.Ser301Ter	p.S301*	ENST00000336596	NM_005233.5	301	tCa/tAa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5219432	5219432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	31	797	1	ENST00000357368.4:c.3812C>T	p.Pro1271Leu	p.P1271L	ENST00000357368	NM_002850.3	1271	cCg/cTg																																																																														
RET	5979	MSKCC	GRCh37	10	43607568	43607569	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	43	935	0	ENST00000355710.3:c.1549dup	p.Leu517ProfsTer13	p.L517Pfs*13	ENST00000355710	NM_020975.4	515	tgc/tgCc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125503240	125503240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			138	14	256	0	ENST00000428830.2:c.607G>C	p.Ala203Pro	p.A203P	ENST00000428830	NM_001114121.2	203	Gct/Cct																																																																														
RAD52	5893	MSKCC	GRCh37	12	1040408	1040408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	33	581	0	ENST00000358495.3:c.164G>T	p.Arg55Leu	p.R55L	ENST00000358495	NM_134424.2	55	cGc/cTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487127	56487127	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	15	348	0	ENST00000267101.3:c.1275-2A>G		p.X425_splice	ENST00000267101	NM_001982.3	425																																																																															
MGA	23269	MSKCC	GRCh37	15	42042028	42042028	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	50	487	0	ENST00000219905.7:c.6223A>T	p.Lys2075Ter	p.K2075*	ENST00000219905	NM_001164273.1	2075	Aag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943800	9943800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	19	451	0	ENST00000330684.3:c.1141C>A	p.His381Asn	p.H381N	ENST00000330684	NM_001134407.1	381	Cat/Aat																																																																														
MSI2	124540	MSKCC	GRCh37	17	55704589	55704589	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	42	657	0	ENST00000284073.2:c.653-1G>T		p.X218_splice	ENST00000284073	NM_138962.2	218																																																																															
CASP8	841	MSKCC	GRCh37	2	202149740	202149740	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	67	579	0	ENST00000358485.4:c.1181A>T	p.Glu394Val	p.E394V	ENST00000358485	NM_001080125.1	394	gAg/gTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713340	40713340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			374	65	670	0	ENST00000373198.4:c.4175G>T	p.Arg1392Leu	p.R1392L	ENST00000373198	NM_133170.3	1392	cGt/cTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47143039	47143039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	32	399	0	ENST00000409792.3:c.4924G>T	p.Val1642Leu	p.V1642L	ENST00000409792	NM_014159.6	1642	Gtg/Ttg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934970	49934971	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AA			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	79	759	0	ENST00000296474.3:c.2028_2029delinsTT	p.Arg677Ter	p.R677*	ENST00000296474	NM_002447.2	676	ctGAga/ctTTga																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143067056	143067056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	30	370	0	ENST00000262992.4:c.1657G>T	p.Gly553Cys	p.G553C	ENST00000262992	NM_001101669.1	553	Ggc/Tgc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798216	32798216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	61	628	0	ENST00000374899.4:c.1463G>T	p.Gly488Val	p.G488V	ENST00000374899	NM_018833.2	488	gGg/gTg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288722	33288722	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	65	440	0	ENST00000374542.5:c.830A>T	p.Lys277Met	p.K277M	ENST00000374542	NM_001141970.1	277	aAg/aTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128829279	128829279	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	46	672	2	ENST00000249373.3:c.287C>A	p.Ser96Ter	p.S96*	ENST00000249373	NM_005631.4	96	tCg/tAg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978665	70978665	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	38	583	0	ENST00000276594.2:c.988T>A	p.Cys330Ser	p.C330S	ENST00000276594	NM_024504.3	330	Tgt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	428	288	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045854	180045854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	219	643	1	ENST00000261937.6:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000261937	NM_182925.4	973	Cgg/Tgg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964491	70964491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	161	543	0	ENST00000276594.2:c.1537G>A	p.Gly513Arg	p.G513R	ENST00000276594	NM_024504.3	513	Ggg/Agg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023055	27023055	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	63	68	0	ENST00000324856.7:c.162del	p.Gln56ArgfsTer45	p.Q56Rfs*45	ENST00000324856	NM_006015.4	54	gCc/gc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157511198	157511198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	240	428	0	ENST00000346085.5:c.3716C>T	p.Pro1239Leu	p.P1239L	ENST00000346085	NM_020732.3	1239	cCa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	24	329	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
BARD1	580	MSKCC	GRCh37	2	215617244	215617244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	45	273	0	ENST00000260947.4:c.1604A>T	p.Asp535Val	p.D535V	ENST00000260947	NM_000465.2	535	gAt/gTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55981108	55981108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	36	383	0	ENST00000263923.4:c.591G>T	p.Met197Ile	p.M197I	ENST00000263923	NM_002253.2	197	atG/atT																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156837945	156837945	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	52	744	0	ENST00000524377.1:c.478C>T	p.Gln160Ter	p.Q160*	ENST00000524377	NM_002529.3	160	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444756	49444756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	44	790	1	ENST00000301067.7:c.2710G>T	p.Gly904Trp	p.G904W	ENST00000301067	NM_003482.3	904	Ggg/Tgg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681003	37681003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	56	411	0	ENST00000447079.4:c.3172G>C	p.Glu1058Gln	p.E1058Q	ENST00000447079	NM_015083.1	1058	Gaa/Caa																																																																														
STK11	6794	MSKCC	GRCh37	19	1207060	1207078	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATGGGGGACCTGCTGG	CTGATGGGGGACCTGCTGG	-			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	61	695	0	ENST00000326873.7:c.148_166del	p.Leu50GlyfsTer8	p.L50Gfs*8	ENST00000326873	NM_000455.4	50	CTGATGGGGGACCTGCTGGgg/gg																																																																														
PAK7	0	MSKCC	GRCh37	20	9520266	9520266	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	28	304	0	ENST00000353224.5:c.2005-2A>G		p.X669_splice	ENST00000353224	NM_177990.2	669																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021497	31021497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	52	495	0	ENST00000375687.4:c.1496G>T	p.Arg499Leu	p.R499L	ENST00000375687	NM_015338.5	499	cGt/cTt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1918753	1918753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	26	251	0	ENST00000382891.5:c.916G>T	p.Glu306Ter	p.E306*	ENST00000382891	NM_133335.3	306	Gag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127351	55127351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	55	405	0	ENST00000257290.5:c.139C>A	p.Leu47Met	p.L47M	ENST00000257290	NM_006206.4	47	Ctg/Atg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35860997	35860997	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	25	265	0	ENST00000303115.3:c.126C>A	p.Cys42Ter	p.C42*	ENST00000303115	NM_002185.3	42	tgC/tgA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509483	106509483	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200755385		P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	60	494	0	ENST00000359195.3:c.1477G>T	p.Asp493Tyr	p.D493Y	ENST00000359195	NM_002649.2	493	Gac/Tac																																																																														
NBN	4683	MSKCC	GRCh37	8	90967645	90967645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	32	225	0	ENST00000265433.3:c.1263G>T	p.Leu421Phe	p.L421F	ENST00000265433	NM_002485.4	421	ttG/ttT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517968	8517968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	55	333	0	ENST00000356435.5:c.1423C>A	p.Gln475Lys	p.Q475K	ENST00000356435		475	Caa/Aaa																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652398	48652398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	79	809	0	ENST00000376670.3:c.1069C>A	p.Pro357Thr	p.P357T	ENST00000376670	NM_002049.3	357	Ccc/Acc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592108	67592108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	52	249	2	ENST00000274335.5:c.1924C>T	p.Arg642Ter	p.R642*	ENST00000274335		642	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	143	429	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0048452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	264	774	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41222995	41222995	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	299	680	0	ENST00000357654.3:c.4936delG	p.Val1646SerfsTer12	p.V1646Sfs*12	ENST00000357654	NM_007294.3	1646	Gtc/tc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339115	65339115	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	148	458	0	ENST00000342505.4:c.421A>G	p.Lys141Glu	p.K141E	ENST00000342505	NM_002227.2	141	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	59	497	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692803	89692803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	79	236	0	ENST00000371953.3:c.287C>T	p.Pro96Leu	p.P96L	ENST00000371953	NM_000314.4	96	cCa/cTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720849	89720853	+	frameshift_variant	Frame_Shift_Del	DEL	AACCG	AACCG	-			P-0048453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	44	272	0	ENST00000371953.3:c.1001_1005del	p.Asn334IlefsTer7	p.N334Ifs*7	ENST00000371953	NM_000314.4	334	AACCGa/a																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984382	72984382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	25	401	0	ENST00000268489.5:c.3202del	p.Leu1068Ter	p.L1068*	ENST00000268489	NM_006885.3	1068	Ctg/tg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991876	72991876	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	68	547	0	ENST00000268489.5:c.2169C>A	p.Tyr723Ter	p.Y723*	ENST00000268489	NM_006885.3	723	taC/taA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106912	27106912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	97	553	0	ENST00000324856.7:c.6523G>A	p.Ala2175Thr	p.A2175T	ENST00000324856	NM_006015.4	2175	Gct/Act																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46531747	46531748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCATA			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	74	204	0	ENST00000262741.5:c.595_599dup	p.Glu200AspfsTer14	p.E200Dfs*14	ENST00000262741	NM_003629.3	200	gaa/gaTATGAa																																																																														
ATM	472	MSKCC	GRCh37	11	108213959	108213959	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	31	227	0	ENST00000278616.4:c.8279T>G	p.Leu2760Arg	p.L2760R	ENST00000278616	NM_000051.3	2760	cTc/cGc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467904	99467904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	71	289	0	ENST00000268035.6:c.2773C>T	p.Gln925Ter	p.Q925*	ENST00000268035	NM_000875.3	925	Cag/Tag																																																																														
RARA	5914	MSKCC	GRCh37	17	38508168	38508168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	12	370	0	ENST00000254066.5:c.476G>A	p.Arg159Lys	p.R159K	ENST00000254066	NM_000964.3	159	aGa/aAa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18963797	18963797	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	109	307	0	ENST00000262803.5:c.974C>T	p.Thr325Ile	p.T325I	ENST00000262803	NM_002911.3	325	aCt/aTt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872377	45872377	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	224	685	0	ENST00000391945.4:c.134G>C	p.Gly45Ala	p.G45A	ENST00000391945	NM_000400.3	45	gGc/gCc																																																																														
CASP8	841	MSKCC	GRCh37	2	202141637	202141637	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	35	316	0	ENST00000358485.4:c.925A>T	p.Lys309Ter	p.K309*	ENST00000358485	NM_001080125.1	309	Aaa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468385	89468385	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	21	203	0	ENST00000336596.2:c.1919T>G	p.Leu640Ter	p.L640*	ENST00000336596	NM_005233.5	640	tTa/tGa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1961331	1961331	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	63	511	1	ENST00000382891.5:c.3119A>G	p.Glu1040Gly	p.E1040G	ENST00000382891	NM_133335.3	1040	gAg/gGg																																																																														
NBN	4683	MSKCC	GRCh37	8	90983511	90983511	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	23	136	0	ENST00000265433.3:c.592C>G	p.Pro198Ala	p.P198A	ENST00000265433	NM_002485.4	198	Cca/Gca																																																																														
PAX5	5079	MSKCC	GRCh37	9	37002728	37002728	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	139	574	0	ENST00000358127.4:c.521del	p.Ser174TrpfsTer104	p.S174Wfs*104	ENST00000358127	NM_001280556.1	174	tCg/tg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904878	101904890	+	frameshift_variant	Frame_Shift_Del	DEL	TTGATTACTTAAA	TTGATTACTTAAA	-			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	117	320	0	ENST00000374994.4:c.866_878del	p.Phe289SerfsTer10	p.F289Sfs*10	ENST00000374994	NM_004612.2	289	tTTGATTACTTAAAc/tc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197000	123197000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	47	346	0	ENST00000218089.9:c.1766T>C	p.Leu589Ser	p.L589S	ENST00000218089	NM_001042749.1	589	tTg/tCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	254	461	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205723	128205723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	146	636	0	ENST00000341105.2:c.152A>G	p.His51Arg	p.H51R	ENST00000341105	NM_032638.4	51	cAc/cGc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628032	187628032	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	138	459	1	ENST00000441802.2:c.2950A>G	p.Arg984Gly	p.R984G	ENST00000441802	NM_005245.3	984	Agg/Ggg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	109	418	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	46	195	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632788	23632788	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	65	377	0	ENST00000261584.4:c.3008del	p.Asn1003ThrfsTer4	p.N1003Tfs*4	ENST00000261584	NM_024675.3	1003	aAc/ac																																																																														
RAD21	5885	MSKCC	GRCh37	8	117861213	117861213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	36	362	0	ENST00000297338.2:c.1676G>T	p.Arg559Met	p.R559M	ENST00000297338	NM_006265.2	559	aGg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	83	309	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	95	281	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	214	591	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023169	33023186	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGCAAAACCCAGCCGC	GGTGCAAAACCCAGCCGC	T			P-0048457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	109	535	0	ENST00000300177.4:c.278_295delinsT	p.Trp93PhefsTer2	p.W93Ffs*2	ENST00000300177	NM_001191322.1	93	tGGTGCAAAACCCAGCCGCtt/tTtt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	20	202	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	91	214	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0048461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	366	456	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174420	11174420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	196	390	0	ENST00000361445.4:c.7255G>A	p.Glu2419Lys	p.E2419K	ENST00000361445	NM_004958.3	2419	Gaa/Aaa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440385	52440386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	165	306	0	ENST00000460680.1:c.666dup	p.Tyr223LeufsTer20	p.Y223Lfs*20	ENST00000460680	NM_004656.3	222	-/C																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9781827	9781827	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	207	543	0	ENST00000377346.4:c.1964T>A	p.Met655Lys	p.M655K	ENST00000377346	NM_005026.3	655	aTg/aAg																																																																														
CBL	867	MSKCC	GRCh37	11	119142554	119142554	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	109	203	0	ENST00000264033.4:c.553G>C	p.Asp185His	p.D185H	ENST00000264033	NM_005188.3	185	Gat/Cat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431254	49431255	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	187	393	0	ENST00000301067.7:c.9884dup	p.Met3295IlefsTer6	p.M3295Ifs*6	ENST00000301067	NM_003482.3	3295	atg/atTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434909	49434909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	224	496	0	ENST00000301067.7:c.6644C>A	p.Ser2215Ter	p.S2215*	ENST00000301067	NM_003482.3	2215	tCa/tAa																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216560	7216561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	206	327	0	ENST00000380728.2:c.774dup	p.Ala259CysfsTer2	p.A259Cfs*2	ENST00000380728		258	-/T																																																																														
EP300	2033	MSKCC	GRCh37	22	41513677	41513684	+	frameshift_variant	Frame_Shift_Del	DEL	GTTCAATT	GTTCAATT	-			P-0048461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	178	347	0	ENST00000263253.7:c.582_589del	p.Ile196ArgfsTer23	p.I196Rfs*23	ENST00000263253	NM_001429.3	194	gGTTCAATT/g																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439898	52439898	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	211	334	0	ENST00000460680.1:c.814C>T	p.Gln272Ter	p.Q272*	ENST00000460680	NM_004656.3	272	Cag/Tag																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081644	143081644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	103	220	0	ENST00000262992.4:c.1430G>A	p.Arg477Lys	p.R477K	ENST00000262992	NM_001101669.1	477	aGg/aAg																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997406	149997406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	177	318	0	ENST00000253339.5:c.2873C>A	p.Thr958Lys	p.T958K	ENST00000253339		958	aCa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	340	809	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476310	88476310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	100	593	0	ENST00000360948.2:c.1822G>A	p.Gly608Ser	p.G608S	ENST00000360948	NM_001012338.2	608	Ggc/Agc																																																																														
CASP8	841	MSKCC	GRCh37	2	202150039	202150039	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0048463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	224	464	0	ENST00000358485.4:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000358485	NM_001080125.1	494	Cga/Tga																																																																														
CD79B	974	MSKCC	GRCh37	17	62008712	62008712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	43	823	0	ENST00000392795.3:c.104G>A	p.Arg35Gln	p.R35Q	ENST00000392795	NM_001039933.1	35	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627723	187627723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	32	287	0	ENST00000441802.2:c.3259G>A	p.Glu1087Lys	p.E1087K	ENST00000441802	NM_005245.3	1087	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	22	310	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	16	213	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
SOS1	6654	MSKCC	GRCh37	2	39251221	39251221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	25	413	0	ENST00000402219.2:c.1132A>T	p.Thr378Ser	p.T378S	ENST00000402219	NM_005633.3	378	Aca/Tca																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96919601	96919601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144326855		P-0048492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	39	679	1	ENST00000258439.3:c.662C>T	p.Pro221Leu	p.P221L	ENST00000258439	NM_001193304.2	221	cCg/cTg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482863	67482874	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	AGTGTGTCTTAG	AGTGTGTCTTAG	TA			P-0048492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	42	486	1	ENST00000327367.4:c.1267_1278delinsTA	p.Ser423Ter	p.S423*	ENST00000327367	NM_005902.3	423	AGTGTGTCTTAG/TA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	250	864	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	151	398	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
NUF2	83540	MSKCC	GRCh37	1	163298091	163298091	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	71	358	0	ENST00000271452.3:c.272A>T	p.His91Leu	p.H91L	ENST00000271452	NM_145697.2	91	cAt/cTt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374861	45374861	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	80	375	0	ENST00000262160.6:c.982A>C	p.Thr328Pro	p.T328P	ENST00000262160	NM_005901.5	328	Aca/Cca																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961559	54961559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	38	332	0	ENST00000312783.6:c.73G>T	p.Val25Phe	p.V25F	ENST00000312783	NM_198436.1	25	Gtt/Ttt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637728	52637730	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	TCA	TCA	-			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	58	289	0	ENST00000394830.3:c.2586_2588del	p.Tyr862_Glu863delinsTer	p.Y862_E863delins*	ENST00000394830	NM_018313.4	862	taTGAa/taa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168962	32168963	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	107	1038	1	ENST00000375023.3:c.4070_4071delinsAA	p.Pro1357Gln	p.P1357Q	ENST00000375023	NM_004557.3	1357	cCC/cAA																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962343	2962343	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	116	828	0	ENST00000396946.4:c.2194A>T	p.Thr732Ser	p.T732S	ENST00000396946	NM_032415.4	732	Acc/Tcc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179149	123179149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	38	201	0	ENST00000218089.9:c.598G>T	p.Val200Phe	p.V200F	ENST00000218089	NM_001042749.1	200	Gtc/Ttc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47058654	47058654	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	64	546	0	ENST00000409792.3:c.7624G>T	p.Glu2542Ter	p.E2542*	ENST00000409792	NM_014159.6	2542	Gag/Tag																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134425	41134425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	87	485	0	ENST00000379561.5:c.1203G>T	p.Gln401His	p.Q401H	ENST00000379561	NM_002015.3	401	caG/caT																																																																														
VHL	7428	MSKCC	GRCh37	3	10183803	10183804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	169	976	0	ENST00000256474.2:c.272_273insA	p.Phe91LeufsTer41	p.F91Lfs*41	ENST00000256474	NM_000551.3	91	ttc/ttAc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739820	46739820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	80	359	0	ENST00000371975.4:c.1621G>A	p.Val541Ile	p.V541I	ENST00000371975	NM_003579.3	541	Gtc/Atc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	153	894	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	87	371	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	113	620	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	318	926	0	ENST00000326873.7:c.667G>A	p.Glu223Lys	p.E223K	ENST00000326873	NM_000455.4	223	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	83	539	2	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	69	420	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	63	351	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793211	139793212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	163	822	5	ENST00000247668.2:c.26dup	p.Gly10TrpfsTer70	p.G10Wfs*70	ENST00000247668	NM_021138.3	7	acc/aCcc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	85	294	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	75	497	0	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	156	904	0	ENST00000269571.5:c.2329G>A	p.Val777Met	p.V777M	ENST00000269571		777	Gtg/Atg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	179	947	1	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129199	64129199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	175	975	1	ENST00000334205.4:c.737C>T	p.Thr246Met	p.T246M	ENST00000334205	NM_003942.2	246	aCg/aTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	44	447	1	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087372	27087373	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	119	521	0	ENST00000324856.7:c.1950dup	p.Met651HisfsTer25	p.M651Hfs*25	ENST00000324856	NM_006015.4	649	ctc/ctCc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	170	1095	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	110	434	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98248079	98248079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	117	540	0	ENST00000331920.6:c.472A>G	p.Met158Val	p.M158V	ENST00000331920	NM_000264.3	158	Atg/Gtg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599271	28599271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1457528646		P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	203	991	0	ENST00000253063.3:c.722del	p.Pro241GlnfsTer6	p.P241Qfs*6	ENST00000253063	NM_031459.4	239	agC/ag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448408	49448408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	144	816	0	ENST00000301067.7:c.303del	p.Ser102AlafsTer28	p.S102Afs*28	ENST00000301067	NM_003482.3	101	ggG/gg																																																																														
POLE	5426	MSKCC	GRCh37	12	133237569	133237569	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147692158		P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	130	523	0	ENST00000320574.5:c.3046G>A	p.Val1016Met	p.V1016M	ENST00000320574	NM_006231.2	1016	Gtg/Atg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30047521	30047521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	67	364	0	ENST00000331968.5:c.2480G>A	p.Arg827His	p.R827H	ENST00000331968	NM_002742.2	827	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112102982	112102982	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201764637		P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	72	379	0	ENST00000257430.4:c.317G>A	p.Arg106His	p.R106H	ENST00000257430	NM_000038.5	106	cGt/cAt																																																																														
MDM4	4194	MSKCC	GRCh37	1	204506585	204506585	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	109	418	0	ENST00000367182.3:c.371A>C	p.Gln124Pro	p.Q124P	ENST00000367182	NM_001278516.1	124	cAg/cCg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711940	89711940	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	84	391	0	ENST00000371953.3:c.559del	p.Asp187IlefsTer12	p.D187Ifs*12	ENST00000371953	NM_000314.4	186	ctG/ct																																																																														
ETV6	2120	MSKCC	GRCh37	12	11905424	11905424	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	60	386	0	ENST00000396373.4:c.74C>A	p.Pro25Gln	p.P25Q	ENST00000396373	NM_001987.4	25	cCg/cAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650626	18650626	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	62	355	0	ENST00000266497.5:c.2837A>G	p.Glu946Gly	p.E946G	ENST00000266497		946	gAa/gGa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845574	72845574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	187	859	0	ENST00000268489.5:c.3766C>A	p.Leu1256Met	p.L1256M	ENST00000268489	NM_006885.3	1256	Ctg/Atg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117878	70117878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	109	636	0	ENST00000245479.2:c.346G>A	p.Ala116Thr	p.A116T	ENST00000245479	NM_000346.3	116	Gcg/Acg																																																																														
EP300	2033	MSKCC	GRCh37	22	41573850	41573851	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	198	877	0	ENST00000263253.7:c.6138_6139del	p.Gln2048ThrfsTer24	p.Q2048Tfs*24	ENST00000263253	NM_001429.3	2045	acTGtg/actg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902466	1902466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	157	578	0	ENST00000382891.5:c.85G>A	p.Gly29Ser	p.G29S	ENST00000382891	NM_133335.3	29	Ggc/Agc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31410939	31410939	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	186	736	0	ENST00000344624.3:c.3581T>C	p.Leu1194Pro	p.L1194P	ENST00000344624		1194	cTg/cCg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589154	67589154	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	27	247	0	ENST00000274335.5:c.1142T>A	p.Ile381Asn	p.I381N	ENST00000274335		381	aTc/aAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589226	67589226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	43	253	1	ENST00000274335.5:c.1214T>A	p.Ile405Lys	p.I405K	ENST00000274335		405	aTa/aAa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141567306	141567306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	145	622	0	ENST00000220592.5:c.908C>T	p.Thr303Met	p.T303M	ENST00000220592	NM_012154.3	303	aCg/aTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772861	135772861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	115	620	0	ENST00000298552.3:c.2762A>G	p.His921Arg	p.H921R	ENST00000298552	NM_001162426.1	921	cAc/cGc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417434	139417434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	184	968	0	ENST00000277541.6:c.610T>C	p.Cys204Arg	p.C204R	ENST00000277541	NM_017617.3	204	Tgc/Cgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933735	39933735	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	128	718	0	ENST00000378444.4:c.864del	p.Trp289GlyfsTer89	p.W289Gfs*89	ENST00000378444	NM_001123385.1	288	ccG/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	80	382	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	27	332	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	233	837	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	61	290	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	41	286	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26101084	26101117	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	TCCCTCATGTCGGGTCTTGAACTGACTGGGAGGC	TCCCTCATGTCGGGTCTTGAACTGACTGGGAGGC	-			P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	52	756	0	ENST00000435504.4:c.-26_8del		p.*9*	ENST00000435504																																																																																	
NTRK2	4915	MSKCC	GRCh37	9	87549181	87549181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	110	462	1	ENST00000277120.3:c.1738C>A	p.Gln580Lys	p.Q580K	ENST00000277120		580	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	723	714	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																														
CCNE1	898	MSKCC	GRCh37	19	30314608	30314608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2739	191	712	0	ENST00000262643.3:c.1157C>T	p.Ala386Val	p.A386V	ENST00000262643	NM_001238.2	386	gCt/gTt																																																																														
ATM	472	MSKCC	GRCh37	11	108203621	108203621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	47	179	0	ENST00000278616.4:c.7921C>G	p.Gln2641Glu	p.Q2641E	ENST00000278616	NM_000051.3	2641	Cag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	63	308	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0048527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	76	247	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	20	388	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	145	589	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0048527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	72	319	0	ENST00000371953.3:c.635-1G>C		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
PTEN	5728	MSKCC	GRCh37	10	89653785	89653785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	49	225	0	ENST00000371953.3:c.83T>C	p.Ile28Thr	p.I28T	ENST00000371953	NM_000314.4	28	aTt/aCt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624270	89624270	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	101	362	0	ENST00000371953.3:c.44G>C	p.Arg15Thr	p.R15T	ENST00000371953	NM_000314.4	15	aGa/aCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	164	576	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	115	281	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	227	623	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189835	66189835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	108	339	0	ENST00000273854.3:c.3111G>T	p.Leu1037Phe	p.L1037F	ENST00000273854	NM_004439.5	1037	ttG/ttT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685303	89685303	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	41	183	0	ENST00000371953.3:c.198G>C	p.Lys66Asn	p.K66N	ENST00000371953	NM_000314.4	66	aaG/aaC																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839699	27839699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	138	492	0	ENST00000328488.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000328488	NM_003533.2	132	cGa/cAa																																																																														
RB1	5925	MSKCC	GRCh37	13	48954353	48954353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	79	274	0	ENST00000267163.4:c.1474G>A	p.Glu492Lys	p.E492K	ENST00000267163	NM_000321.2	492	Gag/Aag																																																																														
TET1	80312	MSKCC	GRCh37	10	70405101	70405101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	123	434	0	ENST00000373644.4:c.2615C>T	p.Pro872Leu	p.P872L	ENST00000373644	NM_030625.2	872	cCc/cTc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45796886	45796886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	185	560	0	ENST00000372115.3:c.1402C>T	p.His468Tyr	p.H468Y	ENST00000372115	NM_001048171.1	468	Cac/Tac																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800901	18800901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	44	314	0	ENST00000266497.5:c.4277G>T	p.Arg1426Leu	p.R1426L	ENST00000266497		1426	cGa/cTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42054048	42054048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	36	213	0	ENST00000219905.7:c.7510G>T	p.Gly2504Cys	p.G2504C	ENST00000219905	NM_001164273.1	2504	Ggt/Tgt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420318	88420318	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	150	413	1	ENST00000360948.2:c.2368G>T	p.Glu790Ter	p.E790*	ENST00000360948	NM_001012338.2	790	Gag/Tag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81941300	81941300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	172	560	0	ENST00000359376.3:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000359376	NM_002661.3	493	cGg/cTg																																																																														
CD79B	974	MSKCC	GRCh37	17	62006606	62006606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	145	649	0	ENST00000392795.3:c.673G>C	p.Glu225Gln	p.E225Q	ENST00000392795	NM_001039933.1	225	Gag/Cag																																																																														
CD79B	974	MSKCC	GRCh37	17	62006808	62006808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	246	754	0	ENST00000392795.3:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000392795	NM_001039933.1	194	Gat/Tat																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617724	39617724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	88	284	0	ENST00000262039.4:c.1908G>T	p.Lys636Asn	p.K636N	ENST00000262039	NM_002647.2	636	aaG/aaT																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29120973	29120973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	120	354	0	ENST00000328354.6:c.584G>C	p.Arg195Thr	p.R195T	ENST00000328354	NM_007194.3	195	aGa/aCa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670621	134670621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	211	732	0	ENST00000398015.3:c.532C>G	p.Gln178Glu	p.Q178E	ENST00000398015	NM_004441.4	178	Cag/Gag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920140	1920140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	221	649	0	ENST00000382891.5:c.1200G>T	p.Arg400Ser	p.R400S	ENST00000382891	NM_133335.3	400	agG/agT																																																																														
RAD21	5885	MSKCC	GRCh37	8	117866565	117866565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	76	362	0	ENST00000297338.2:c.1080G>C	p.Leu360Phe	p.L360F	ENST00000297338	NM_006265.2	360	ttG/ttC																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740421	145740421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	352	958	0	ENST00000428558.2:c.1519G>A	p.Gly507Ser	p.G507S	ENST00000428558	NM_004260.3	507	Ggc/Agc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814804	139814804	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	263	867	0	ENST00000247668.2:c.797C>G	p.Ser266Ter	p.S266*	ENST00000247668	NM_021138.3	266	tCa/tGa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226979	53226979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	232	367	0	ENST00000375401.3:c.2596G>T	p.Ala866Ser	p.A866S	ENST00000375401	NM_004187.3	866	Gcc/Tcc																																																																														
MED12	9968	MSKCC	GRCh37	X	70355010	70355010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	286	363	0	ENST00000374080.3:c.4932G>T	p.Gln1644His	p.Q1644H	ENST00000374080		1644	caG/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	130	828	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223019	41223019	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	152	766	1	ENST00000357654.3:c.4912G>T	p.Glu1638Ter	p.E1638*	ENST00000357654	NM_007294.3	1638	Gaa/Taa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170737	99170737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	38	484	0	ENST00000074304.5:c.1366C>G	p.Arg456Gly	p.R456G	ENST00000074304	NM_001134224.1	456	Cgg/Ggg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138064	64138064	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	71	1104	0	ENST00000334205.4:c.1987C>G	p.Leu663Val	p.L663V	ENST00000334205	NM_003942.2	663	Ctg/Gtg																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250442	26250442	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	96	628	0	ENST00000446824.2:c.392T>A	p.Ile131Asn	p.I131N	ENST00000446824	NM_021018.2	131	aTt/aAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	178	292	0				ENST00000310581	NM_198253.2																																																																																
MAP3K13	9175	MSKCC	GRCh37	3	185191385	185191385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	387	800	0	ENST00000265026.3:c.2266G>A	p.Asp756Asn	p.D756N	ENST00000265026	NM_004721.4	756	Gac/Aac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	426	726	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106732	27106732	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	745	701	0	ENST00000324856.7:c.6343C>T	p.Gln2115Ter	p.Q2115*	ENST00000324856	NM_006015.4	2115	Cag/Tag																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626883	14626883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	462	728	0	ENST00000254322.2:c.892C>T	p.Pro298Ser	p.P298S	ENST00000254322	NM_006145.1	298	Cct/Tct																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981140	201981141	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	572	843	0	ENST00000359651.3:c.219_220del	p.Asp74LeufsTer17	p.D74Lfs*17	ENST00000359651		73	ctGGac/ctac																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204852	94204852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	167	385	0	ENST00000323929.3:c.733C>T	p.His245Tyr	p.H245Y	ENST00000323929	NM_005591.3	245	Cat/Tat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118370579	118370579	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	129	316	0	ENST00000534358.1:c.6109C>G	p.Leu2037Val	p.L2037V	ENST00000534358	NM_005933.3	2037	Cta/Gta																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443596	49443596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	402	826	1	ENST00000301067.7:c.3775C>A	p.Leu1259Ile	p.L1259I	ENST00000301067	NM_003482.3	1259	Ctc/Atc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1611750	1611750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	512	936	0	ENST00000344749.5:c.1912C>T	p.His638Tyr	p.H638Y	ENST00000344749	NM_001136139.2	638	Cac/Tac																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2202733	2202733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	421	725	0	ENST00000398665.3:c.742G>C	p.Glu248Gln	p.E248Q	ENST00000398665	NM_032482.2	248	Gag/Cag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71096213	71096213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	201	291	0	ENST00000318789.4:c.544C>T	p.Gln182Ter	p.Q182*	ENST00000318789	NM_032682.5	182	Cag/Tag																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191103	185191103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	355	679	0	ENST00000265026.3:c.1984G>C	p.Asp662His	p.D662H	ENST00000265026	NM_004721.4	662	Gac/Cac																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191349	185191349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	360	758	0	ENST00000265026.3:c.2230G>A	p.Asp744Asn	p.D744N	ENST00000265026	NM_004721.4	744	Gac/Aac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405706	139405706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	645	1083	0	ENST00000277541.6:c.2485G>A	p.Val829Met	p.V829M	ENST00000277541	NM_017617.3	829	Gtg/Atg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038832	47038851	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTCCTGGCCTCCCAAGCC	GAGTCCTGGCCTCCCAAGCC	A			P-0048532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	551	500	0	ENST00000329236.7:c.608_627delinsA	p.Gly203AspfsTer22	p.G203Dfs*22	ENST00000329236	NM_001204466.1	203	gGAGTCCTGGCCTCCCAAGCC/gA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048540-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	465	450	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048540-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			145	505	372	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112064	115112064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048540-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	506	668	0	ENST00000257566.3:c.1676C>T	p.Thr559Met	p.T559M	ENST00000257566	NM_016569.3	559	aCg/aTg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250272	39250272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048540-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			674	701	693	0	ENST00000402219.2:c.1297G>A	p.Glu433Lys	p.E433K	ENST00000402219	NM_005633.3	433	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105723	27105727	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGG	AGAGG	-			P-0048540-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	170	413	0	ENST00000324856.7:c.5335_5339del	p.Glu1779SerfsTer3	p.E1779Sfs*3	ENST00000324856	NM_006015.4	1778	gaAGAGGaa/gaaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521978	157521988	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCATCCAG	GGCCCATCCAG	-			P-0048540-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	408	550	0	ENST00000346085.5:c.4254_4264del	p.Ile1419ValfsTer36	p.I1419Vfs*36	ENST00000346085	NM_020732.3	1417	aGGCCCATCCAG/a																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942749	44942749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048540-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	281	575	0	ENST00000377967.4:c.3329T>C	p.Val1110Ala	p.V1110A	ENST00000377967	NM_021140.2	1110	gTg/gCg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	168	233	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
ATR	545	MSKCC	GRCh37	3	142277547	142277547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	141	212	1	ENST00000350721.4:c.1804C>A	p.His602Asn	p.H602N	ENST00000350721	NM_001184.3	602	Cat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	417	882	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965472	68965472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200682883		P-0048588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	109	707	1	ENST00000288368.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000288368	NM_024870.2	362	Cgg/Tgg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46298720	46298720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	84	353	0	ENST00000334344.6:c.5367G>T	p.Leu1789Phe	p.L1789F	ENST00000334344	NM_152641.2	1789	ttG/ttT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820942	3820942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	210	836	0	ENST00000262367.5:c.2509G>A	p.Gly837Arg	p.G837R	ENST00000262367	NM_004380.2	837	Ggg/Agg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538180	187538180	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	122	562	0	ENST00000441802.2:c.9054C>G	p.Asp3018Glu	p.D3018E	ENST00000441802	NM_005245.3	3018	gaC/gaG																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272493	11272493	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	175	575	0	ENST00000361445.4:c.3437T>G	p.Leu1146Arg	p.L1146R	ENST00000361445	NM_004958.3	1146	cTg/cGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	169	622	6	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248289	59248289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	27	140	0	ENST00000371222.2:c.454G>A	p.Gly152Arg	p.G152R	ENST00000371222	NM_002228.3	152	Ggg/Agg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	35	434	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	175	497	0	ENST00000371953.3:c.395G>T	p.Gly132Val	p.G132V	ENST00000371953	NM_000314.4	132	gGt/gTt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	313	774	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94924738	94924738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	151	633	0	ENST00000536441.1:c.172C>G	p.Arg58Gly	p.R58G	ENST00000536441	NM_144665.3	58	Cgt/Ggt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438211	49438211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	194	630	2	ENST00000301067.7:c.5058delA	p.Lys1686AsnfsTer36	p.K1686Nfs*36	ENST00000301067	NM_003482.3	1686	aaA/aa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	167	699	16	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
POLE	5426	MSKCC	GRCh37	12	133252351	133252351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	162	455	0	ENST00000320574.5:c.1076T>C	p.Met359Thr	p.M359T	ENST00000320574	NM_006231.2	359	aTg/aCg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987172	36987172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	168	602	1	ENST00000354822.5:c.517C>A	p.Leu173Met	p.L173M	ENST00000354822	NM_001079668.2	173	Ctg/Atg																																																																														
MAX	4149	MSKCC	GRCh37	14	65560487	65560487	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	185	574	0	ENST00000358664.4:c.110A>C	p.Asp37Ala	p.D37A	ENST00000358664	NM_002382.4	37	gAc/gCc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43771610	43771610	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	155	537	0	ENST00000382044.4:c.773del	p.Asn258IlefsTer165	p.N258Ifs*165	ENST00000382044	NM_001141980.1	258	aAt/at																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136754	2136754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	175	734	0	ENST00000219476.3:c.4871T>C	p.Leu1624Pro	p.L1624P	ENST00000219476	NM_000548.3	1624	cTg/cCg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782242	56782242	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	195	557	0	ENST00000308159.5:c.83A>G	p.His28Arg	p.H28R	ENST00000308159	NM_014669.4	28	cAt/cGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830426	72830426	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	83	331	0	ENST00000268489.5:c.6155del	p.Pro2052ArgfsTer49	p.P2052Rfs*49	ENST00000268489	NM_006885.3	2052	cCg/cg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341589	89341589	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	29	443	0	ENST00000301030.4:c.7481del	p.Pro2494LeufsTer8	p.P2494Lfs*8	ENST00000301030	NM_001256183.1	2494	cCt/ct																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	197	755	2	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56390434	56390434	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	69	342	0	ENST00000348428.3:c.1173G>C	p.Met391Ile	p.M391I	ENST00000348428	NM_006785.3	391	atG/atC																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211137	36211138	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	237	811	1	ENST00000222270.7:c.888_889delinsTT	p.Arg297Ter	p.R297*	ENST00000222270	NM_014727.1	296	ggCCga/ggTTga																																																																														
CIC	23152	MSKCC	GRCh37	19	42791286	42791286	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs61741480		P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	179	693	0	ENST00000575354.2:c.346G>T	p.Val116Leu	p.V116L	ENST00000575354	NM_015125.3	116	Gtg/Ttg																																																																														
ALK	238	MSKCC	GRCh37	2	29436911	29436911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	170	639	0	ENST00000389048.3:c.3682C>T	p.His1228Tyr	p.H1228Y	ENST00000389048	NM_004304.4	1228	Cac/Tac																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	92	350	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
NF2	4771	MSKCC	GRCh37	22	30035092	30035092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	97	406	0	ENST00000338641.4:c.254A>G	p.Asp85Gly	p.D85G	ENST00000338641	NM_000268.3	85	gAt/gGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952073	178952073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	65	430	0	ENST00000263967.3:c.3128T>C	p.Met1043Thr	p.M1043T	ENST00000263967	NM_006218.2	1043	aTg/aCg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591270	67591270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	75	408	0	ENST00000274335.5:c.1768C>T	p.Arg590Trp	p.R590W	ENST00000274335		590	Cgg/Tgg																																																																														
IRF4	3662	MSKCC	GRCh37	6	401544	401544	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	130	561	0	ENST00000380956.4:c.866A>G	p.Gln289Arg	p.Q289R	ENST00000380956	NM_001195286.1	289	cAg/cGg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	191	589	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467774	50467774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148169768		P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	203	683	0	ENST00000331340.3:c.1009G>A	p.Gly337Ser	p.G337S	ENST00000331340	NM_006060.4	337	Ggt/Agt																																																																														
BRAF	673	MSKCC	GRCh37	7	140434510	140434510	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	106	347	0	ENST00000288602.6:c.2188G>T	p.Glu730Ter	p.E730*	ENST00000288602	NM_004333.4	730	Gaa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971099	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	94	411	0	ENST00000304494.5:c.259dup	p.Arg87ProfsTer33	p.R87Pfs*33	ENST00000304494	NM_000077.4	87	cgg/cCgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971099	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	94	411	0	ENST00000304494.5:c.259dup	p.Arg87ProfsTer33	p.R87Pfs*33	ENST00000304494	NM_000077.4	87	cgg/cCgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971099	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	94	411	0	ENST00000304494.5:c.259dup	p.Arg87ProfsTer33	p.R87Pfs*33	ENST00000304494	NM_000077.4	87	cgg/cCgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	140	457	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	140	457	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	19	303	0				ENST00000310581	NM_198253.2																																																																																
ALK	238	MSKCC	GRCh37	2	30143341	30143341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	47	512	0	ENST00000389048.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000389048	NM_004304.4	62	tCg/tTg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696719	47696719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	18	375	0	ENST00000347630.2:c.229G>C	p.Asp77His	p.D77H	ENST00000347630	NM_001007230.1	77	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577572	7577572	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	34	540	0	ENST00000269305.4:c.709A>G	p.Met237Val	p.M237V	ENST00000269305	NM_001126112.2	237	Atg/Gtg																																																																														
EP300	2033	MSKCC	GRCh37	22	41564485	41564485	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	17	388	0	ENST00000263253.7:c.3907G>C	p.Glu1303Gln	p.E1303Q	ENST00000263253	NM_001429.3	1303	Gag/Cag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11303244	11303244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	38	645	0	ENST00000361445.4:c.1339G>A	p.Glu447Lys	p.E447K	ENST00000361445	NM_004958.3	447	Gag/Aag																																																																														
AKT1	207	MSKCC	GRCh37	14	105238746	105238746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	55	650	1	ENST00000349310.3:c.1216C>T	p.Arg406Cys	p.R406C	ENST00000349310	NM_001014432.1	406	Cgc/Tgc																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519518	137519518	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	15	395	0	ENST00000367739.4:c.1120A>G	p.Ile374Val	p.I374V	ENST00000367739	NM_000416.2	374	Ata/Gta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	334	344	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	48936995	48936995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	141	479	0	ENST00000267163.4:c.763C>T	p.Arg255Ter	p.R255*	ENST00000267163	NM_000321.2	255	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288486	15288486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	264	300	0	ENST00000263388.2:c.4253C>T	p.Ser1418Leu	p.S1418L	ENST00000263388	NM_000435.2	1418	tCg/tTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912185	114912185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	96	670	1	ENST00000543371.1:c.1255G>A	p.Ala419Thr	p.A419T	ENST00000543371	NM_001198531.1	419	Gcg/Acg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223262	36223262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1407	266	937	0	ENST00000222270.7:c.5812C>T	p.Gln1938Ter	p.Q1938*	ENST00000222270	NM_014727.1	1938	Cag/Tag																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683453	88683453	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	10	21	0	ENST00000372037.3:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000372037	NM_004329.2	526	Gaa/Caa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436971	49436971	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	164	711	2	ENST00000301067.7:c.5534-2A>T		p.X1845_splice	ENST00000301067	NM_003482.3	1845																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88423546	88423546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	140	707	0	ENST00000360948.2:c.2289C>G	p.Ile763Met	p.I763M	ENST00000360948	NM_001012338.2	763	atC/atG																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81916914	81916914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	99	704	0	ENST00000359376.3:c.733G>A	p.Asp245Asn	p.D245N	ENST00000359376	NM_002661.3	245	Gac/Aac																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366198	15366198	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	206	801	0	ENST00000263377.2:c.1957G>T	p.Glu653Ter	p.E653*	ENST00000263377	NM_058243.2	653	Gaa/Taa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159155	143159155	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	50	365	0	ENST00000262992.4:c.698A>T	p.Asn233Ile	p.N233I	ENST00000262992	NM_001101669.1	233	aAc/aTc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652084	36652111	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCCTTGGCCTGCCCAAGCTCTACCT	GGGGCCTTGGCCTGCCCAAGCTCTACCT	-			P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	462	861	0	ENST00000244741.5:c.206_233del	p.Arg69LeufsTer70	p.R69Lfs*70	ENST00000244741	NM_000389.4	69	cGGGGCCTTGGCCTGCCCAAGCTCTACCTt/ct																																																																														
HGF	3082	MSKCC	GRCh37	7	81335637	81335637	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	143	571	0	ENST00000222390.5:c.1723G>T	p.Glu575Ter	p.E575*	ENST00000222390	NM_000601.4	575	Gaa/Taa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372398	55372398	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	201	765	0	ENST00000297316.4:c.1088T>A	p.Phe363Tyr	p.F363Y	ENST00000297316	NM_022454.3	363	tTt/tAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	445	495	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	34	528	2	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178942545	178942545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	175	473	0	ENST00000263967.3:c.2352G>C	p.Glu784Asp	p.E784D	ENST00000263967	NM_006218.2	784	gaG/gaC																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405201	139405201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	368	868	1	ENST00000277541.6:c.2644G>A	p.Ala882Thr	p.A882T	ENST00000277541	NM_017617.3	882	Gca/Aca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125235	47125235	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	207	515	0	ENST00000409792.3:c.6035T>C	p.Leu2012Pro	p.L2012P	ENST00000409792	NM_014159.6	2012	cTc/cCc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5240233	5240233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	343	838	2	ENST00000357368.4:c.1681C>T	p.Arg561Trp	p.R561W	ENST00000357368	NM_002850.3	561	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628173	187628173	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	375	782	0	ENST00000441802.2:c.2809C>T	p.Arg937Ter	p.R937*	ENST00000441802	NM_005245.3	937	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447389	49447389	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	389	827	0	ENST00000301067.7:c.709G>T	p.Glu237Ter	p.E237*	ENST00000301067	NM_003482.3	237	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434423	49434423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	352	857	0	ENST00000301067.7:c.7130C>T	p.Pro2377Leu	p.P2377L	ENST00000301067	NM_003482.3	2377	cCa/cTa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89849509	89849509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0048592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	248	579	0	ENST00000389301.3:c.1472T>C	p.Val491Ala	p.V491A	ENST00000389301	NM_000135.2	491	gTg/gCg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7982803	7982803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	359	806	0	ENST00000319144.4:c.982G>A	p.Glu328Lys	p.E328K	ENST00000319144	NM_001139.2	328	Gag/Aag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231391	5231392	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGATGCGGTACTGGGTCCACTTCT			P-0048592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	256	776	0	ENST00000357368.4:c.2060_2084dup	p.Thr696GlufsTer101	p.T696Efs*101	ENST00000357368	NM_002850.3	695	acg/acAGAAGTGGACCCAGTACCGCATCACg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	1015	668	2	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524297	176524297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	143	768	0	ENST00000292408.4:c.2158G>A	p.Gly720Arg	p.G720R	ENST00000292408	NM_213647.1	720	Ggg/Agg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262415	16262415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	330	457	0	ENST00000375759.3:c.9680A>T	p.Gln3227Leu	p.Q3227L	ENST00000375759	NM_015001.2	3227	cAg/cTg																																																																														
RET	5979	MSKCC	GRCh37	10	43615527	43615527	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0048593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	32	560	0	ENST00000355710.3:c.2608-2A>C		p.X870_splice	ENST00000355710	NM_020975.4	870																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910426	32910426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	42	385	0	ENST00000380152.3:c.1934G>T	p.Arg645Ile	p.R645I	ENST00000380152		645	aGa/aTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259221	89259221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	34	497	0	ENST00000336596.2:c.365T>A	p.Leu122Gln	p.L122Q	ENST00000336596	NM_005233.5	122	cTg/cAg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911548	131911548	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	69	494	0	ENST00000265335.6:c.293G>C	p.Arg98Thr	p.R98T	ENST00000265335		98	aGa/aCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937003	178937003	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	67	577	0	ENST00000263967.3:c.1684C>G	p.Pro562Ala	p.P562A	ENST00000263967	NM_006218.2	562	Ccc/Gcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937002	178937002	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	66	572	0	ENST00000263967.3:c.1686del	p.Glu563LysfsTer18	p.E563Kfs*18	ENST00000263967	NM_006218.2	561	atC/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	433	582	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	219	1059	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11130353	11130353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	64	972	0	ENST00000344626.4:c.2592C>G	p.Ile864Met	p.I864M	ENST00000344626	NM_003072.3	864	atC/atG																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924456	131924456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	83	540	0	ENST00000265335.6:c.1129C>G	p.Gln377Glu	p.Q377E	ENST00000265335		377	Cag/Gag																																																																														
AGO2	27161	MSKCC	GRCh37	8	141559308	141559308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	121	1000	3	ENST00000220592.5:c.1493C>T	p.Ala498Val	p.A498V	ENST00000220592	NM_012154.3	498	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106681	27106681	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	63	908	0	ENST00000324856.7:c.6292G>T	p.Glu2098Ter	p.E2098*	ENST00000324856	NM_006015.4	2098	Gaa/Taa																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245912928	245912928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	90	607	0	ENST00000388985.4:c.1224C>A	p.His408Gln	p.H408Q	ENST00000388985		408	caC/caA																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109783	115109783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	274	940	0	ENST00000257566.3:c.2095C>A	p.Leu699Ile	p.L699I	ENST00000257566	NM_016569.3	699	Ctc/Atc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90633864	90633864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	96	824	1	ENST00000330062.3:c.220C>T	p.His74Tyr	p.H74Y	ENST00000330062	NM_002168.2	74	Cac/Tac																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533766	63533766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	148	886	1	ENST00000307078.5:c.1388G>T	p.Arg463Leu	p.R463L	ENST00000307078	NM_004655.3	463	cGc/cTc																																																																														
INHA	3623	MSKCC	GRCh37	2	220439460	220439460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	99	852	0	ENST00000243786.2:c.313G>A	p.Glu105Lys	p.E105K	ENST00000243786	NM_002191.3	105	Gag/Aag																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62323169	62323169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	138	728	0	ENST00000508582.2:c.2703G>T	p.Lys901Asn	p.K901N	ENST00000508582		901	aaG/aaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637649	176637655	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTCTC	CTCTCTC	-			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	102	777	0	ENST00000439151.2:c.2249_2255del	p.Ala750ValfsTer16	p.A750Vfs*16	ENST00000439151	NM_022455.4	750	gCTCTCTCt/gt																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194592	29194592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	129	1115	1	ENST00000240100.2:c.1136G>A	p.Ser379Asn	p.S379N	ENST00000240100	NM_001394.6	379	aGc/aAc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426749	47426749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	117	937	0	ENST00000377045.4:c.994G>T	p.Asp332Tyr	p.D332Y	ENST00000377045	NM_001654.4	332	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0048477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	57	715	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	85	451	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																														
TERT	7015	MSKCC	GRCh37	5	1255456	1255456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	16	582	1	ENST00000310581.5:c.3103G>A	p.Val1035Ile	p.V1035I	ENST00000310581	NM_198253.2	1035	Gtc/Atc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026813	71026813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	40	202	0	ENST00000318789.4:c.1409A>G	p.Tyr470Cys	p.Y470C	ENST00000318789	NM_032682.5	470	tAt/tGt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670253	134670253	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	31	463	0	ENST00000398015.3:c.164T>A	p.Ile55Asn	p.I55N	ENST00000398015	NM_004441.4	55	aTc/aAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851873	134851873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	88	510	0	ENST00000398015.3:c.1279A>G	p.Ile427Val	p.I427V	ENST00000398015	NM_004441.4	427	Atc/Gtc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781041	135781041	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	52	550	0	ENST00000298552.3:c.1924T>G	p.Ser642Ala	p.S642A	ENST00000298552	NM_001162426.1	642	Tct/Gct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	138	347	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450301	50450301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	83	551	0	ENST00000331340.3:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000331340	NM_006060.4	162	cGg/cAg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852392	63852392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	37	566	0	ENST00000279873.7:c.3170C>T	p.Ala1057Val	p.A1057V	ENST00000279873	NM_032199.2	1057	gCg/gTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114901077	114901077	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0048481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	132	300	0	ENST00000543371.1:c.685+2T>G		p.X229_splice	ENST00000543371	NM_001198531.1	229																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30093410	30093410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	76	395	0	ENST00000331968.5:c.1853G>A	p.Arg618Gln	p.R618Q	ENST00000331968	NM_002742.2	618	cGa/cAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41572509	41572509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	136	736	0	ENST00000263253.7:c.5038C>T	p.Arg1680Cys	p.R1680C	ENST00000263253	NM_001429.3	1680	Cgc/Tgc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156720	20156720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	38	166	1	ENST00000379607.5:c.37C>T	p.Arg13Cys	p.R13C	ENST00000379607	NM_001412.3	13	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0048484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	429	660	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325763	30325763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	38	200	0	ENST00000322652.5:c.1961G>A	p.Arg654Gln	p.R654Q	ENST00000322652	NM_015355.2	654	cGa/cAa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798543	32798543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	125	473	0	ENST00000374899.4:c.1313G>A	p.Gly438Glu	p.G438E	ENST00000374899	NM_018833.2	438	gGa/gAa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085746	16085746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	135	441	0	ENST00000281043.3:c.922C>A	p.Leu308Met	p.L308M	ENST00000281043	NM_005378.4	308	Ctg/Atg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873653	151873653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	39	341	0	ENST00000262189.6:c.8885G>C	p.Gly2962Ala	p.G2962A	ENST00000262189	NM_170606.2	2962	gGc/gCc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	143	317	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	274	692	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456347	99456347	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	194	436	0	ENST00000268035.6:c.1664A>G	p.Asp555Gly	p.D555G	ENST00000268035	NM_000875.3	555	gAc/gGc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118365476	118365476	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	99	242	0	ENST00000534358.1:c.5357C>G	p.Ser1786Ter	p.S1786*	ENST00000534358	NM_005933.3	1786	tCa/tGa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272952	11272952	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	144	300	0	ENST00000361445.4:c.3299T>C	p.Ile1100Thr	p.I1100T	ENST00000361445	NM_004958.3	1100	aTc/aCc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692927	89692928	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0048485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	346	497	0	ENST00000371953.3:c.413_414del	p.Tyr138PhefsTer41	p.Y138Ffs*41	ENST00000371953	NM_000314.4	137	gcATat/gcat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344113	118344113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	132	433	0	ENST00000534358.1:c.2239G>A	p.Glu747Lys	p.E747K	ENST00000534358	NM_005933.3	747	Gaa/Aaa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21643239	21643239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	196	552	0	ENST00000421138.2:c.288G>T	p.Gln96His	p.Q96H	ENST00000421138		96	caG/caT																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52723043	52723043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	241	595	0	ENST00000322088.6:c.1228G>C	p.Glu410Gln	p.E410Q	ENST00000322088	NM_014225.5	410	Gag/Cag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271234	153271234	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	58	203	0	ENST00000281708.4:c.544T>C	p.Ser182Pro	p.S182P	ENST00000281708	NM_033632.3	182	Tct/Cct																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176450	123176451	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0048485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	88	250	1	ENST00000218089.9:c.417_418delinsTT	p.Met139_Gln140delinsIleTer	p.M139_Q140delinsI*	ENST00000218089	NM_001042749.1	139	atGCag/atTTag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806095	1806099	+	missense_variant	Missense_Mutation	ONP	GTGTA	GTGTA	CAGTG			P-0048485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	297	822	1	ENST00000260795.2:c.1114_1118delinsCAGTG	p.Val372_Tyr373delinsGlnCys	p.V372_Y373delinsQC	ENST00000260795		372	GTGTAt/CAGTGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0020338-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	237	668	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0020338-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			13	172	371	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020338-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	310	976	2	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020338-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			10	90	284	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020338-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	168	591	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874217	155874217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020338-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	341	505	0	ENST00000368323.3:c.314G>A	p.Arg105His	p.R105H	ENST00000368323	NM_006912.5	105	cGt/cAt																																																																														
CALR	811	MSKCC	GRCh37	19	13051119	13051119	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020338-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			619	210	542	0	ENST00000316448.5:c.555G>C	p.Lys185Asn	p.K185N	ENST00000316448	NM_004343.3	185	aaG/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020951-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	209	619	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020951-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	167	397	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0020951-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			94	95	96	0	ENST00000371953.3:c.209+1G>C		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0020951-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	72	369	6	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																														
LYN	4067	MSKCC	GRCh37	8	56863342	56863342	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0020951-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	84	231	0	ENST00000519728.1:c.486A>C	p.Lys162Asn	p.K162N	ENST00000519728	NM_002350.3	162	aaA/aaC																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218780	36218780	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0028732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	325	821	0	ENST00000222270.7:c.4393-2A>G		p.X1465_splice	ENST00000222270	NM_014727.1	1465																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55141022	55141045	+	inframe_deletion	In_Frame_Del	DEL	AATTCGCTGGAGGGTCATTGAATC	AATTCGCTGGAGGGTCATTGAATC	-			P-0028732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	98	280	0	ENST00000257290.5:c.1671_1694del	p.Arg558_Ile565del	p.R558_I565del	ENST00000257290	NM_006206.4	556	gaAATTCGCTGGAGGGTCATTGAATCa/gaa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0031299-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			489	49	911	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031299-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			521	126	691	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031299-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			571	151	823	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031299-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			563	201	992	2	ENST00000269305.4:c.403T>A	p.Cys135Ser	p.C135S	ENST00000269305	NM_001126112.2	135	Tgc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0041883-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	85	524	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599945	10599945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041883-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	98	565	0	ENST00000171111.5:c.1631G>T	p.Trp544Leu	p.W544L	ENST00000171111	NM_203500.1	544	tGg/tTg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166850	32166850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041883-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			634	70	586	0	ENST00000375023.3:c.4388G>A	p.Gly1463Glu	p.G1463E	ENST00000375023	NM_004557.3	1463	gGg/gAg																																																																														
MGA	23269	MSKCC	GRCh37	15	41988474	41988474	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041883-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	16	325	0	ENST00000219905.7:c.1266A>G	p.Ile422Met	p.I422M	ENST00000219905	NM_001164273.1	422	atA/atG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	38	301	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0044537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	92	302	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	165	460	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061774	38061774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	195	583	1	ENST00000250448.2:c.215G>A	p.Gly72Asp	p.G72D	ENST00000250448	NM_004496.3	72	gGc/gAc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12475599	12475599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	132	421	0	ENST00000287820.6:c.1473G>A	p.Met491Ile	p.M491I	ENST00000287820	NM_015869.4	491	atG/atA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434142	49434142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	188	600	1	ENST00000301067.7:c.7411C>T	p.Arg2471Ter	p.R2471*	ENST00000301067	NM_003482.3	2471	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972611	32972611	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	82	346	0	ENST00000380152.3:c.9961C>T	p.Gln3321Ter	p.Q3321*	ENST00000380152		3321	Cag/Tag																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607794	46607794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	121	641	1	ENST00000263734.3:c.1983C>A	p.Phe661Leu	p.F661L	ENST00000263734	NM_001430.4	661	ttC/ttA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32969035	32969035	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	76	295	0	ENST00000380152.3:c.9466C>T	p.Gln3156Ter	p.Q3156*	ENST00000380152		3156	Caa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	443506	443506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	105	315	0	ENST00000399788.2:c.1391C>G	p.Ser464Cys	p.S464C	ENST00000399788	NM_001042603.1	464	tCt/tGt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109773	115109773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			524	153	650	0	ENST00000257566.3:c.2105G>T	p.Ser702Ile	p.S702I	ENST00000257566	NM_016569.3	702	aGc/aTc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739688	145739688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	203	656	0	ENST00000428558.2:c.1763G>A	p.Gly588Glu	p.G588E	ENST00000428558	NM_004260.3	588	gGa/gAa																																																																														
ATR	545	MSKCC	GRCh37	3	142234358	142234358	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0044537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	83	232	0	ENST00000350721.4:c.4383-1G>C		p.X1461_splice	ENST00000350721	NM_001184.3	1461																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047182-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			92	29	327	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986567	36986568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047182-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	116	577	1	ENST00000354822.5:c.1121dup	p.Ser375IlefsTer64	p.S375Ifs*64	ENST00000354822	NM_001079668.2	374	gta/gtTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047486-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	108	474	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047486-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	108	474	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047486-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	108	474	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098950	178098950	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047486-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	40	304	0	ENST00000397062.3:c.95T>G	p.Val32Gly	p.V32G	ENST00000397062	NM_006164.4	32	gTa/gGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047486-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			177	108	604	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023183	150023183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047486-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	58	451	1	ENST00000253339.5:c.80G>T	p.Ser27Ile	p.S27I	ENST00000253339		27	aGc/aTc																																																																														
AR	367	MSKCC	GRCh37	X	66766462	66766462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047486-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	49	455	0	ENST00000374690.3:c.1474G>T	p.Gly492Cys	p.G492C	ENST00000374690	NM_000044.3	492	Ggc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937996	76937996	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047486-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	25	537	1	ENST00000373344.5:c.2752A>T	p.Thr918Ser	p.T918S	ENST00000373344	NM_000489.3	918	Act/Tct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261484	16261485	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0047486-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	19	571	0	ENST00000375759.3:c.8752_8753del	p.Ser2918GlyfsTer44	p.S2918Gfs*44	ENST00000375759	NM_015001.2	2917	CTc/c																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047991-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			106	200	228	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	120	267	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	227	299	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	661	461	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857148	9857148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	129	274	2	ENST00000330684.3:c.4253G>A	p.Gly1418Asp	p.G1418D	ENST00000330684	NM_001134407.1	1418	gGc/gAc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971375	13971375	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	62	244	0	ENST00000405192.2:c.555-1G>C		p.X185_splice	ENST00000405192	NM_001163147.1	185																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72992288	72992288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	241	586	0	ENST00000268489.5:c.1757G>A	p.Arg586Lys	p.R586K	ENST00000268489	NM_006885.3	586	aGg/aAg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39600606	39600606	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	69	152	0	ENST00000262039.4:c.1421A>T	p.Asp474Val	p.D474V	ENST00000262039	NM_002647.2	474	gAt/gTt																																																																														
BTK	695	MSKCC	GRCh37	X	100617187	100617187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	179	195	0	ENST00000308731.7:c.562C>T	p.Leu188Phe	p.L188F	ENST00000308731	NM_000061.2	188	Ctt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	391	740	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42003423	42003423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	33	420	0	ENST00000219905.7:c.2960G>C	p.Gly987Ala	p.G987A	ENST00000219905	NM_001164273.1	987	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	257	1320	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt																																																																														
RB1	5925	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	116	479	1	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280109	66280109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	79	384	1	ENST00000273854.3:c.1580C>A	p.Ala527Glu	p.A527E	ENST00000273854	NM_004439.5	527	gCa/gAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914949	32914949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	82	499	0	ENST00000380152.3:c.6457C>A	p.Pro2153Thr	p.P2153T	ENST00000380152		2153	Cca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	86	360	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591902	48591902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	108	450	0	ENST00000342988.3:c.1065C>A	p.Asp355Glu	p.D355E	ENST00000342988	NM_005359.5	355	gaC/gaA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566845	212566845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	70	219	0	ENST00000342788.4:c.1336C>A	p.Gln446Lys	p.Q446K	ENST00000342788	NM_005235.2	446	Cag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	51	163	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	21	52	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105767	27105767	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	35	159	0	ENST00000324856.7:c.5378A>T	p.Lys1793Met	p.K1793M	ENST00000324856	NM_006015.4	1793	aAg/aTg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	55	714	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	52	304	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	32	688	4	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
CIC	23152	MSKCC	GRCh37	19	42798148	42798148	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1619	111	811	0	ENST00000575354.2:c.4102G>C	p.Glu1368Gln	p.E1368Q	ENST00000575354	NM_015125.3	1368	Gag/Cag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856520	45856520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	308	667	1	ENST00000391945.4:c.1738G>A	p.Ala580Thr	p.A580T	ENST00000391945	NM_000400.3	580	Gcc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420277	49420277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	382	610	0	ENST00000301067.7:c.15472G>A	p.Glu5158Lys	p.E5158K	ENST00000301067	NM_003482.3	5158	Gag/Aag																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864878	117864878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	47	415	0	ENST00000297338.2:c.1231G>C	p.Asp411His	p.D411H	ENST00000297338	NM_006265.2	411	Gat/Cat																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18277972	18277972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	53	515	0	ENST00000222254.8:c.1592G>A	p.Arg531His	p.R531H	ENST00000222254	NM_005027.3	531	cGc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845262	151845262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	233	487	0	ENST00000262189.6:c.13750C>T	p.Arg4584Trp	p.R4584W	ENST00000262189	NM_170606.2	4584	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418690	49418690	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	241	431	0	ENST00000301067.7:c.15824G>C	p.Arg5275Thr	p.R5275T	ENST00000301067	NM_003482.3	5275	aGa/aCa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41197713	41197713	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs150199718		P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	49	789	0	ENST00000357654.3:c.5574C>G	p.Ile1858Met	p.I1858M	ENST00000357654	NM_007294.3	1858	atC/atG																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575210	48575210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	56	199	0	ENST00000342988.3:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000342988	NM_005359.5	135	cGa/cAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42798136	42798136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1593	111	784	0	ENST00000575354.2:c.4090G>A	p.Glu1364Lys	p.E1364K	ENST00000575354	NM_015125.3	1364	Gag/Aag																																																																														
RYBP	23429	MSKCC	GRCh37	3	72428559	72428559	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	29	269	0	ENST00000477973.2:c.443C>T	p.Gln149Ter	p.Q149*	ENST00000477973	NM_012234.5	149	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468458	89468458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	18	213	0	ENST00000336596.2:c.1992G>C	p.Arg664Ser	p.R664S	ENST00000336596	NM_005233.5	664	agG/agC																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149436909	149436909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	39	749	0	ENST00000286301.3:c.2260G>A	p.Asp754Asn	p.D754N	ENST00000286301	NM_005211.3	754	Gac/Aac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	101	71	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39278352	39278352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	126	173	0	ENST00000402219.2:c.797C>A	p.Thr266Lys	p.T266K	ENST00000402219	NM_005633.3	266	aCa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0048276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	287	194	0	ENST00000269305.4:c.993G>C	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caC																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714548	52714550	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0048276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	774	211	0	ENST00000322088.6:c.306_308del	p.Val104del	p.V104del	ENST00000322088	NM_014225.5	102	acAGTg/acg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148506170	148506171	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	93	309	0	ENST00000320356.2:c.2187dupT	p.Asp730Ter	p.D730*	ENST00000320356	NM_004456.4	729	-/T																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	324	493	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058575	69058575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	92	424	0	ENST00000288368.4:c.4219C>T	p.Leu1407Phe	p.L1407F	ENST00000288368	NM_024870.2	1407	Ctt/Ttt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27058000	27058000	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	101	444	0	ENST00000324856.7:c.1710del	p.Ser571ArgfsTer48	p.S571Rfs*48	ENST00000324856	NM_006015.4	570	Ccc/cc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68999967	68999967	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	56	319	0	ENST00000288368.4:c.2036A>T	p.Lys679Ile	p.K679I	ENST00000288368	NM_024870.2	679	aAa/aTa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981924	70981924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	146	741	0	ENST00000276594.2:c.172G>T	p.Ala58Ser	p.A58S	ENST00000276594	NM_024504.3	58	Gcc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	168	590	3	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464881	120464881	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	54	295	0	ENST00000256646.2:c.5191G>T	p.Gly1731Ter	p.G1731*	ENST00000256646	NM_024408.3	1731	Gga/Tga																																																																														
SESN2	83667	MSKCC	GRCh37	1	28607311	28607311	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	45	451	0	ENST00000253063.3:c.1441T>A	p.Ter481ArgextTer61	p.*481Rext*61	ENST00000253063	NM_031459.4	481	Tga/Aga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120483295	120483295	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	27	279	0	ENST00000256646.2:c.3066C>A	p.Cys1022Ter	p.C1022*	ENST00000256646	NM_024408.3	1022	tgC/tgA																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724645	112724645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	37	364	0	ENST00000369452.4:c.529C>T	p.Arg177Trp	p.R177W	ENST00000369452	NM_007373.3	177	Cgg/Tgg																																																																														
WT1	7490	MSKCC	GRCh37	11	32417946	32417946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	67	354	0	ENST00000332351.3:c.1106G>T	p.Arg369Leu	p.R369L	ENST00000332351	NM_024426.4	369	cGa/cTa																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873200	136873200	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	85	291	0	ENST00000241393.3:c.298del	p.Ala100GlnfsTer68	p.A100Qfs*68	ENST00000241393	NM_003467.2	100	Gca/ca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566878	212566878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	65	180	0	ENST00000342788.4:c.1303C>T	p.Leu435Phe	p.L435F	ENST00000342788	NM_005235.2	435	Ctt/Ttt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662442	227662442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	160	580	0	ENST00000305123.5:c.1013G>T	p.Arg338Leu	p.R338L	ENST00000305123	NM_005544.2	338	cGc/cTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735462	40735462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	73	611	0	ENST00000373198.4:c.3411G>T	p.Glu1137Asp	p.E1137D	ENST00000373198	NM_133170.3	1137	gaG/gaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743842	40743842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	36	352	0	ENST00000373198.4:c.3153G>T	p.Gln1051His	p.Q1051H	ENST00000373198	NM_133170.3	1051	caG/caT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944533	40944533	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	47	431	0	ENST00000373198.4:c.1969del	p.Ser657AlafsTer12	p.S657Afs*12	ENST00000373198	NM_133170.3	657	Agc/gc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651383	52651383	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	58	369	0	ENST00000394830.3:c.1713delT	p.Ile571MetfsTer16	p.I571Mfs*16	ENST00000394830	NM_018313.4	571	atT/at																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027100	71027109	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCGTTGGA	GGTCGTTGGA	-			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	82	500	0	ENST00000318789.4:c.1218_1227del	p.Pro407GlnfsTer5	p.P407Qfs*5	ENST00000318789	NM_032682.5	406	acTCCAACGACC/ac																																																																														
ATR	545	MSKCC	GRCh37	3	142278180	142278180	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	44	338	0	ENST00000350721.4:c.1645A>C	p.Ser549Arg	p.S549R	ENST00000350721	NM_001184.3	549	Agt/Cgt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920264	1920264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	57	524	0	ENST00000382891.5:c.1324A>G	p.Lys442Glu	p.K442E	ENST00000382891	NM_133335.3	442	Aag/Gag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721833	176721842	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTCATGG	AAGTTCATGG	-			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	29	451	1	ENST00000439151.2:c.7464_7473del	p.Ser2489LeufsTer86	p.S2489Lfs*86	ENST00000439151	NM_022455.4	2488	tcAAGTTCATGG/tc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450358	50450358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	105	444	2	ENST00000331340.3:c.542C>T	p.Ala181Val	p.A181V	ENST00000331340	NM_006060.4	181	gCc/gTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509041	106509041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	74	521	0	ENST00000359195.3:c.1035C>A	p.Asp345Glu	p.D345E	ENST00000359195	NM_002649.2	345	gaC/gaA																																																																														
MED12	9968	MSKCC	GRCh37	X	70349643	70349643	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	113	555	0	ENST00000374080.3:c.3805T>A	p.Ser1269Thr	p.S1269T	ENST00000374080		1269	Tct/Act																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0048296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	177	560	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	57	332	0				ENST00000310581	NM_198253.2																																																																																
INSR	3643	MSKCC	GRCh37	19	7163204	7163204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	96	507	0	ENST00000302850.5:c.1868C>T	p.Ser623Phe	p.S623F	ENST00000302850	NM_000208.2	623	tCt/tTt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430829	181430829	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	153	1123	1	ENST00000325404.1:c.681C>A	p.Tyr227Ter	p.Y227*	ENST00000325404	NM_003106.3	227	taC/taA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	83	285	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0048297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	48	758	1	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0048297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	103	731	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563018	21563018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	83	809	2	ENST00000382592.4:c.901G>A	p.Gly301Ser	p.G301S	ENST00000382592	NM_014572.2	301	Ggc/Agc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343529	118343529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	72	340	0	ENST00000534358.1:c.1660del	p.Gln554SerfsTer13	p.Q554Sfs*13	ENST00000534358	NM_005933.3	552	gCc/gc																																																																														
RB1	5925	MSKCC	GRCh37	13	49027178	49027179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	67	324	0	ENST00000267163.4:c.1747dup	p.Thr583AsnfsTer2	p.T583Nfs*2	ENST00000267163	NM_000321.2	582	cca/ccAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630786	187630786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	68	551	0	ENST00000441802.2:c.196C>T	p.Pro66Ser	p.P66S	ENST00000441802	NM_005245.3	66	Cca/Tca																																																																														
BRCA1	672	MSKCC	GRCh37	17	41209094	41209099	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTTT	CGCTTT	TG			P-0048297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	34	546	1	ENST00000357654.3:c.5247_5252delinsCA	p.Arg1751GlnfsTer13	p.R1751Qfs*13	ENST00000357654	NM_007294.3	1749	ccAAAGCGa/ccCAa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073530	8073530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	160	424	0	ENST00000377482.5:c.1129C>T	p.Pro377Ser	p.P377S	ENST00000377482	NM_018948.3	377	Cct/Tct																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777624	9777624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	62	784	0	ENST00000377346.4:c.960G>T	p.Glu320Asp	p.E320D	ENST00000377346	NM_005026.3	320	gaG/gaT																																																																														
MTOR	2475	MSKCC	GRCh37	1	11269467	11269467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	211	493	0	ENST00000361445.4:c.3703C>T	p.Arg1235Trp	p.R1235W	ENST00000361445	NM_004958.3	1235	Cgg/Tgg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272943	11272943	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	149	377	0	ENST00000361445.4:c.3308T>A	p.Phe1103Tyr	p.F1103Y	ENST00000361445	NM_004958.3	1103	tTt/tAt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254623	16254623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	166	424	0	ENST00000375759.3:c.1888C>T	p.Arg630Cys	p.R630C	ENST00000375759	NM_015001.2	630	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106582	27106582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	254	764	0	ENST00000324856.7:c.6193G>A	p.Ala2065Thr	p.A2065T	ENST00000324856	NM_006015.4	2065	Gcc/Acc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932167	36932167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	155	709	0	ENST00000361632.4:c.2302C>A	p.Leu768Ile	p.L768I	ENST00000361632		768	Ctc/Atc																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39305238	39305238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	202	502	0	ENST00000373001.3:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000373001	NM_022157.3	396	cGa/cAa																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521529	46521529	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	222	442	0	ENST00000262741.5:c.879A>C	p.Lys293Asn	p.K293N	ENST00000262741	NM_003629.3	293	aaA/aaC																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521540	46521540	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	217	439	0	ENST00000262741.5:c.868G>T	p.Glu290Ter	p.E290*	ENST00000262741	NM_003629.3	290	Gaa/Taa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46726593	46726593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	204	576	1	ENST00000371975.4:c.672G>T	p.Lys224Asn	p.K224N	ENST00000371975	NM_003579.3	224	aaG/aaT																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439638	51439638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	136	355	0	ENST00000262662.1:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000262662		68	cGa/cAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65309886	65309886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	151	458	1	ENST00000342505.4:c.2264G>A	p.Arg755Gln	p.R755Q	ENST00000342505	NM_002227.2	755	cGa/cAa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78414985	78414985	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	73	333	0	ENST00000370768.2:c.1781G>C	p.Gly594Ala	p.G594A	ENST00000370768	NM_003902.3	594	gGt/gCt																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736388	85736388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	152	335	0	ENST00000370580.1:c.259C>T	p.Arg87Trp	p.R87W	ENST00000370580	NM_003921.4	87	Cgg/Tgg																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165875	118165875	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	117	430	0	ENST00000369448.3:c.385A>C	p.Ile129Leu	p.I129L	ENST00000369448	NM_017709.3	129	Atc/Ctc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458147	120458147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	214	681	1	ENST00000256646.2:c.7198C>T	p.Arg2400Ter	p.R2400*	ENST00000256646	NM_024408.3	2400	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120461167	120461167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	91	335	0	ENST00000256646.2:c.5791C>T	p.Arg1931Cys	p.R1931C	ENST00000256646	NM_024408.3	1931	Cgc/Tgc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163315554	163315554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	161	329	0	ENST00000271452.3:c.894G>T	p.Lys298Asn	p.K298N	ENST00000271452	NM_145697.2	298	aaG/aaT																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111168	193111168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	100	304	0	ENST00000367435.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000367435	NM_024529.4	234	cGa/cAa																																																																														
FH	2271	MSKCC	GRCh37	1	241675359	241675359	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			224	76	364	0	ENST00000366560.3:c.463G>T	p.Glu155Ter	p.E155*	ENST00000366560	NM_000143.3	155	Gaa/Taa																																																																														
FH	2271	MSKCC	GRCh37	1	241680556	241680556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	21	413	0	ENST00000366560.3:c.193G>T	p.Asp65Tyr	p.D65Y	ENST00000366560	NM_000143.3	65	Gat/Tat																																																																														
AKT3	10000	MSKCC	GRCh37	1	243809199	243809199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	51	340	0	ENST00000263826.5:c.425G>T	p.Arg142Ile	p.R142I	ENST00000263826	NM_005465.4	142	aGa/aTa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63810647	63810647	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			207	16	181	0	ENST00000279873.7:c.734C>T	p.Ala245Val	p.A245V	ENST00000279873	NM_032199.2	245	gCg/gTg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850777	63850777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	161	431	0	ENST00000279873.7:c.1555G>A	p.Glu519Lys	p.E519K	ENST00000279873	NM_032199.2	519	Gaa/Aaa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851755	63851755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	256	600	2	ENST00000279873.7:c.2533G>A	p.Glu845Lys	p.E845K	ENST00000279873	NM_032199.2	845	Gag/Aag																																																																														
TET1	80312	MSKCC	GRCh37	10	70332336	70332336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	151	476	0	ENST00000373644.4:c.241C>T	p.Arg81Cys	p.R81C	ENST00000373644	NM_030625.2	81	Cgc/Tgc																																																																														
TET1	80312	MSKCC	GRCh37	10	70333539	70333539	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	86	553	0	ENST00000373644.4:c.1444A>C	p.Asn482His	p.N482H	ENST00000373644	NM_030625.2	482	Aac/Cac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692874	89692874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	125	219	0	ENST00000371953.3:c.358G>A	p.Ala120Thr	p.A120T	ENST00000371953	NM_000314.4	120	Gca/Aca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720816	89720816	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	150	401	0	ENST00000371953.3:c.967A>C	p.Asn323His	p.N323H	ENST00000371953	NM_000314.4	323	Aat/Cat																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	166	600	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258036	123258036	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	11	428	0	ENST00000358487.5:c.1645A>C	p.Asn549His	p.N549H	ENST00000358487	NM_000141.4	549	Aat/Cat																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154421	2154421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	35	877	0	ENST00000434045.2:c.507C>A	p.Phe169Leu	p.F169L	ENST00000434045	NM_001127598.1	169	ttC/ttA																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161460	2161460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	217	641	0	ENST00000434045.2:c.67C>A	p.Gln23Lys	p.Q23K	ENST00000434045	NM_001127598.1	23	Caa/Aaa																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316108	14316108	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	126	299	0	ENST00000256196.4:c.317A>C	p.Lys106Thr	p.K106T	ENST00000256196		106	aAg/aCg																																																																														
WT1	7490	MSKCC	GRCh37	11	32417904	32417904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	175	530	0	ENST00000332351.3:c.1148C>T	p.Ser383Phe	p.S383F	ENST00000332351	NM_024426.4	383	tCt/tTt																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625333	69625333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	244	904	0	ENST00000334134.2:c.460T>C	p.Tyr154His	p.Y154H	ENST00000334134	NM_005247.2	154	Tac/Cac																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625354	69625354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	160	858	1	ENST00000334134.2:c.439C>T	p.Pro147Ser	p.P147S	ENST00000334134	NM_005247.2	147	Ccc/Tcc																																																																														
EED	8726	MSKCC	GRCh37	11	85988988	85988988	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	135	238	0	ENST00000263360.6:c.1154A>C	p.Lys385Thr	p.K385T	ENST00000263360	NM_003797.3	385	aAa/aCa																																																																														
PGR	5241	MSKCC	GRCh37	11	100912801	100912801	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	128	374	0	ENST00000325455.5:c.2521T>C	p.Phe841Leu	p.F841L	ENST00000325455	NM_001202474.3	841	Ttt/Ctt																																																																														
PGR	5241	MSKCC	GRCh37	11	100999086	100999086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	73	753	0	ENST00000325455.5:c.716G>A	p.Gly239Asp	p.G239D	ENST00000325455	NM_001202474.3	239	gGc/gAc																																																																														
YAP1	10413	MSKCC	GRCh37	11	102080254	102080254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193100333		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	162	400	0	ENST00000282441.5:c.991C>T	p.Arg331Trp	p.R331W	ENST00000282441	NM_001130145.2	331	Cgg/Tgg																																																																														
YAP1	10413	MSKCC	GRCh37	11	102100496	102100496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	218	479	0	ENST00000282441.5:c.1340C>T	p.Ala447Val	p.A447V	ENST00000282441	NM_001130145.2	447	gCc/gTc																																																																														
ATM	472	MSKCC	GRCh37	11	108114842	108114842	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145355104		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			198	155	380	0	ENST00000278616.4:c.659C>T	p.Ala220Val	p.A220V	ENST00000278616	NM_000051.3	220	gCg/gTg																																																																														
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	156	369	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108124717	108124717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	146	349	0	ENST00000278616.4:c.2075G>A	p.Arg692His	p.R692H	ENST00000278616	NM_000051.3	692	cGc/cAc																																																																														
ATM	472	MSKCC	GRCh37	11	108175544	108175544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	144	352	0	ENST00000278616.4:c.5639C>T	p.Thr1880Met	p.T1880M	ENST00000278616	NM_000051.3	1880	aCg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108216627	108216627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			163	90	231	0	ENST00000278616.4:c.8576C>T	p.Ser2859Phe	p.S2859F	ENST00000278616	NM_000051.3	2859	tCt/tTt																																																																														
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587782292		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	157	444	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118365111	118365111	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	133	337	0	ENST00000534358.1:c.5287C>T	p.Arg1763Trp	p.R1763W	ENST00000534358	NM_005933.3	1763	Cgg/Tgg																																																																														
CBL	867	MSKCC	GRCh37	11	119142447	119142447	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs199739868		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	163	328	0	ENST00000264033.4:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000264033	NM_005188.3	149	cGa/cAa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125514012	125514012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	155	438	0	ENST00000428830.2:c.950C>A	p.Ser317Tyr	p.S317Y	ENST00000428830	NM_001114121.2	317	tCt/tAt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402085	402085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	215	484	0	ENST00000399788.2:c.4706C>T	p.Ala1569Val	p.A1569V	ENST00000399788	NM_001042603.1	1569	gCt/gTt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416138	416138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	180	316	0	ENST00000399788.2:c.4048C>T	p.Arg1350Ter	p.R1350*	ENST00000399788	NM_001042603.1	1350	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	431664	431664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	219	480	1	ENST00000399788.2:c.2345G>A	p.Arg782Gln	p.R782Q	ENST00000399788	NM_001042603.1	782	cGa/cAa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	465601	465601	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	265	500	0	ENST00000399788.2:c.775G>T	p.Glu259Ter	p.E259*	ENST00000399788	NM_001042603.1	259	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	465607	465607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	261	537	0	ENST00000399788.2:c.769G>T	p.Asp257Tyr	p.D257Y	ENST00000399788	NM_001042603.1	257	Gat/Tat																																																																														
CCND2	894	MSKCC	GRCh37	12	4385283	4385283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	166	468	1	ENST00000261254.3:c.308C>T	p.Ala103Val	p.A103V	ENST00000261254	NM_001759.3	103	gCt/gTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435082	18435082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	18	287	0	ENST00000266497.5:c.67G>T	p.Glu23Ter	p.E23*	ENST00000266497		23	Gaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435490	18435490	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			66	70	241	0	ENST00000266497.5:c.475G>T	p.Glu159Ter	p.E159*	ENST00000266497		159	Gaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435588	18435588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			115	98	258	0	ENST00000266497.5:c.573G>T	p.Glu191Asp	p.E191D	ENST00000266497		191	gaG/gaT																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18466933	18466933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	122	340	0	ENST00000266497.5:c.1072G>T	p.Asp358Tyr	p.D358Y	ENST00000266497		358	Gat/Tat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18473938	18473938	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	86	249	0	ENST00000266497.5:c.1180G>T	p.Glu394Ter	p.E394*	ENST00000266497		394	Gaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491360	18491360	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			83	70	196	0	ENST00000266497.5:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000266497		425	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552613	18552613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	67	347	0	ENST00000266497.5:c.2024G>T	p.Arg675Ile	p.R675I	ENST00000266497		675	aGa/aTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716359	18716359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	130	296	0	ENST00000266497.5:c.3706G>A	p.Glu1236Lys	p.E1236K	ENST00000266497		1236	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18762492	18762492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	127	412	0	ENST00000266497.5:c.3988C>T	p.Pro1330Ser	p.P1330S	ENST00000266497		1330	Cct/Tct																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800957	18800957	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	14	292	0	ENST00000266497.5:c.4333A>G	p.Ile1445Val	p.I1445V	ENST00000266497		1445	Att/Gtt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123895	46123895	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	109	253	0	ENST00000334344.6:c.161T>G	p.Val54Gly	p.V54G	ENST00000334344	NM_152641.2	54	gTc/gGc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46242710	46242710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	119	270	0	ENST00000334344.6:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000334344	NM_152641.2	558	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426266	49426266	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	308	955	0	ENST00000301067.7:c.12222A>C	p.Gln4074His	p.Q4074H	ENST00000301067	NM_003482.3	4074	caA/caC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432623	49432623	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	285	838	0	ENST00000301067.7:c.8516C>G	p.Ser2839Ter	p.S2839*	ENST00000301067	NM_003482.3	2839	tCa/tGa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433373	49433373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	249	797	1	ENST00000301067.7:c.8074C>T	p.Arg2692Trp	p.R2692W	ENST00000301067	NM_003482.3	2692	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437986	49437986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	210	676	1	ENST00000301067.7:c.5185G>A	p.Glu1729Lys	p.E1729K	ENST00000301067	NM_003482.3	1729	Gag/Aag																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50488303	50488303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	216	510	0	ENST00000394963.4:c.1217C>A	p.Ser406Tyr	p.S406Y	ENST00000394963	NM_003076.4	406	tCt/tAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481824	56481824	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	220	671	0	ENST00000267101.3:c.752A>G	p.Asp251Gly	p.D251G	ENST00000267101	NM_001982.3	251	gAc/gGc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57857489	57857489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	274	880	1	ENST00000228682.2:c.15G>T	p.Met5Ile	p.M5I	ENST00000228682	NM_005269.2	5	atG/atT																																																																														
IGF1	3479	MSKCC	GRCh37	12	102874103	102874103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			111	92	237	0	ENST00000307046.8:c.57C>A	p.Phe19Leu	p.F19L	ENST00000307046	NM_001111285.1	19	ttC/ttA																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112891037	112891037	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	135	330	0	ENST00000351677.2:c.371A>C	p.Lys124Thr	p.K124T	ENST00000351677	NM_002834.3	124	aAa/aCa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117320	115117320	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	106	222	0	ENST00000257566.3:c.854A>C	p.Gln285Pro	p.Q285P	ENST00000257566	NM_016569.3	285	cAg/cCg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416625	121416625	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	207	810	0	ENST00000257555.6:c.54G>C	p.Glu18Asp	p.E18D	ENST00000257555		18	gaG/gaC																																																																														
POLE	5426	MSKCC	GRCh37	12	133240670	133240670	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	139	630	0	ENST00000320574.5:c.2626T>G	p.Phe876Val	p.F876V	ENST00000320574	NM_006231.2	876	Ttt/Gtt																																																																														
POLE	5426	MSKCC	GRCh37	12	133245434	133245434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	223	757	0	ENST00000320574.5:c.1886C>A	p.Ala629Asp	p.A629D	ENST00000320574	NM_006231.2	629	gCc/gAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133252703	133252703	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	151	533	0	ENST00000320574.5:c.997T>A	p.Cys333Ser	p.C333S	ENST00000320574	NM_006231.2	333	Tgt/Agt																																																																														
POLE	5426	MSKCC	GRCh37	12	133253212	133253212	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	162	548	0	ENST00000320574.5:c.829G>C	p.Glu277Gln	p.E277Q	ENST00000320574	NM_006231.2	277	Gag/Cag																																																																														
POLE	5426	MSKCC	GRCh37	12	133253957	133253957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	215	487	1	ENST00000320574.5:c.793G>A	p.Glu265Lys	p.E265K	ENST00000320574	NM_006231.2	265	Gaa/Aaa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26970475	26970475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	16	147	0	ENST00000381527.3:c.844G>T	p.Asp282Tyr	p.D282Y	ENST00000381527	NM_001260.1	282	Gat/Tat																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975443	26975443	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	190	392	0	ENST00000381527.3:c.1069G>T	p.Glu357Ter	p.E357*	ENST00000381527	NM_001260.1	357	Gaa/Taa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28597525	28597525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	175	443	0	ENST00000241453.7:c.2380C>A	p.Gln794Lys	p.Q794K	ENST00000241453	NM_004119.2	794	Caa/Aaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28599042	28599042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	149	470	0	ENST00000241453.7:c.2246C>T	p.Ser749Leu	p.S749L	ENST00000241453	NM_004119.2	749	tCg/tTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608270	28608270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	163	499	0	ENST00000241453.7:c.1786G>A	p.Glu596Lys	p.E596K	ENST00000241453	NM_004119.2	596	Gaa/Aaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609763	28609763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	191	572	0	ENST00000241453.7:c.1466G>T	p.Arg489Ile	p.R489I	ENST00000241453	NM_004119.2	489	aGa/aTa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611338	28611338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	53	434	0	ENST00000241453.7:c.1293C>A	p.Phe431Leu	p.F431L	ENST00000241453	NM_004119.2	431	ttC/ttA																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895653	28895653	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	185	458	0	ENST00000282397.4:c.3121T>G	p.Phe1041Val	p.F1041V	ENST00000282397	NM_002019.4	1041	Ttt/Gtt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964128	28964128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	125	386	0	ENST00000282397.4:c.1774C>A	p.Leu592Met	p.L592M	ENST00000282397	NM_002019.4	592	Ctg/Atg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004242	29004242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	131	343	0	ENST00000282397.4:c.1051C>T	p.Arg351Trp	p.R351W	ENST00000282397	NM_002019.4	351	Cgg/Tgg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005332	29005332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	190	422	0	ENST00000282397.4:c.929C>A	p.Thr310Asn	p.T310N	ENST00000282397	NM_002019.4	310	aCt/aAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907124	32907124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	131	391	0	ENST00000380152.3:c.1509G>T	p.Lys503Asn	p.K503N	ENST00000380152		503	aaG/aaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911760	32911760	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	57	480	0	ENST00000380152.3:c.3268A>C	p.Met1090Leu	p.M1090L	ENST00000380152		1090	Atg/Ctg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914260	32914260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	166	452	0	ENST00000380152.3:c.5768A>G	p.Asp1923Gly	p.D1923G	ENST00000380152		1923	gAc/gGc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950837	32950837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			224	135	348	1	ENST00000380152.3:c.8663G>A	p.Arg2888His	p.R2888H	ENST00000380152		2888	cGt/cAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	124	293	0	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			123	95	175	0	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48953781	48953781	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			97	82	153	0	ENST00000267163.4:c.1384A>C	p.Lys462Gln	p.K462Q	ENST00000267163	NM_000321.2	462	Aaa/Caa																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281447	49281447	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	180	700	0	ENST00000282018.3:c.494T>G	p.Leu165Arg	p.L165R	ENST00000282018	NM_020377.2	165	cTt/cGt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73334768	73334768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			160	47	210	0	ENST00000377767.4:c.2692G>T	p.Asp898Tyr	p.D898Y	ENST00000377767	NM_014953.3	898	Gat/Tat																																																																														
DIS3	22894	MSKCC	GRCh37	13	73345070	73345070	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	140	305	0	ENST00000377767.4:c.1727A>C	p.Lys576Thr	p.K576T	ENST00000377767	NM_014953.3	576	aAg/aCg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346314	73346314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	147	243	0	ENST00000377767.4:c.1486G>A	p.Glu496Lys	p.E496K	ENST00000377767	NM_014953.3	496	Gaa/Aaa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346320	73346320	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	32	248	0	ENST00000377767.4:c.1480G>T	p.Glu494Ter	p.E494*	ENST00000377767	NM_014953.3	494	Gaa/Taa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504513	103504513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140917545		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			177	108	302	0	ENST00000355739.4:c.134G>A	p.Arg45His	p.R45H	ENST00000355739	NM_000123.3	45	cGc/cAc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514595	103514595	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	125	352	0	ENST00000355739.4:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000355739	NM_000123.3	366	Cga/Tga																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30095743	30095743	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	151	357	0	ENST00000331968.5:c.1745A>C	p.Gln582Pro	p.Q582P	ENST00000331968	NM_002742.2	582	cAg/cCg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30102098	30102098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	185	492	0	ENST00000331968.5:c.1369G>T	p.Asp457Tyr	p.D457Y	ENST00000331968	NM_002742.2	457	Gac/Tac																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30105579	30105579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	256	622	1	ENST00000331968.5:c.1107G>T	p.Glu369Asp	p.E369D	ENST00000331968	NM_002742.2	369	gaG/gaT																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988353	36988353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	15	350	0	ENST00000354822.5:c.300G>T	p.Met100Ile	p.M100I	ENST00000354822	NM_001079668.2	100	atG/atT																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68353757	68353757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	69	241	1	ENST00000487270.1:c.592G>T	p.Glu198Ter	p.E198*	ENST00000487270	NM_133509.3	198	Gaa/Taa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554305	81554305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			24	246	350	0	ENST00000298171.2:c.325C>T	p.Arg109Trp	p.R109W	ENST00000298171	NM_000369.2	109	Cgg/Tgg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557695	95557695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	138	362	0	ENST00000343455.3:c.5372G>A	p.Arg1791Lys	p.R1791K	ENST00000343455	NM_177438.2	1791	aGa/aAa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570365	95570365	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			118	105	281	0	ENST00000343455.3:c.3368A>C	p.Lys1123Thr	p.K1123T	ENST00000343455	NM_177438.2	1123	aAg/aCg																																																																														
MGA	23269	MSKCC	GRCh37	15	42000323	42000323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	207	352	0	ENST00000219905.7:c.2342C>A	p.Ser781Tyr	p.S781Y	ENST00000219905	NM_001164273.1	781	tCt/tAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42003374	42003374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	189	423	1	ENST00000219905.7:c.2911C>T	p.Arg971Trp	p.R971W	ENST00000219905	NM_001164273.1	971	Cgg/Tgg																																																																														
MGA	23269	MSKCC	GRCh37	15	42028765	42028765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	199	541	0	ENST00000219905.7:c.4303G>A	p.Asp1435Asn	p.D1435N	ENST00000219905	NM_001164273.1	1435	Gat/Aat																																																																														
MGA	23269	MSKCC	GRCh37	15	42040978	42040978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	266	659	1	ENST00000219905.7:c.5356C>T	p.Arg1786Trp	p.R1786W	ENST00000219905	NM_001164273.1	1786	Cgg/Tgg																																																																														
MGA	23269	MSKCC	GRCh37	15	42041074	42041074	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	241	604	0	ENST00000219905.7:c.5452C>T	p.Arg1818Ter	p.R1818*	ENST00000219905	NM_001164273.1	1818	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42041753	42041753	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	23	424	0	ENST00000219905.7:c.5948C>A	p.Ser1983Ter	p.S1983*	ENST00000219905	NM_001164273.1	1983	tCa/tAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42042025	42042025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199971244		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	221	505	0	ENST00000219905.7:c.6220C>T	p.Arg2074Cys	p.R2074C	ENST00000219905	NM_001164273.1	2074	Cgt/Tgt																																																																														
MGA	23269	MSKCC	GRCh37	15	42052661	42052661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	222	474	0	ENST00000219905.7:c.7332G>T	p.Glu2444Asp	p.E2444D	ENST00000219905	NM_001164273.1	2444	gaG/gaT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701889	43701889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			130	116	206	0	ENST00000382044.4:c.5356C>T	p.Arg1786Ter	p.R1786*	ENST00000382044	NM_001141980.1	1786	Cga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707863	43707863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	302	820	2	ENST00000382044.4:c.5018G>T	p.Arg1673Ile	p.R1673I	ENST00000382044	NM_001141980.1	1673	aGa/aTa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749137	43749137	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	270	673	0	ENST00000382044.4:c.1669T>C	p.Ser557Pro	p.S557P	ENST00000382044	NM_001141980.1	557	Tct/Cct																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749297	43749297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	157	564	0	ENST00000382044.4:c.1509G>T	p.Lys503Asn	p.K503N	ENST00000382044	NM_001141980.1	503	aaG/aaT																																																																														
B2M	567	MSKCC	GRCh37	15	45008529	45008529	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			115	89	192	0	ENST00000558401.1:c.349C>T	p.Arg117Ter	p.R117*	ENST00000558401	NM_004048.2	117	Cga/Tga																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66679759	66679759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	33	465	0	ENST00000307102.5:c.74C>A	p.Ser25Tyr	p.S25Y	ENST00000307102	NM_002755.3	25	tCt/tAt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727423	66727423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	191	386	1	ENST00000307102.5:c.139C>T	p.Arg47Ter	p.R47*	ENST00000307102	NM_002755.3	47	Cga/Tga																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67358533	67358533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	163	400	0	ENST00000327367.4:c.41G>A	p.Arg14His	p.R14H	ENST00000327367	NM_005902.3	14	cGc/cAc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473770	67473770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	211	668	0	ENST00000327367.4:c.850G>A	p.Glu284Lys	p.E284K	ENST00000327367	NM_005902.3	284	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679159	88679159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			126	99	429	0	ENST00000360948.2:c.878G>T	p.Ser293Ile	p.S293I	ENST00000360948	NM_001012338.2	293	aGc/aTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726674	88726674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	16	468	1	ENST00000360948.2:c.370G>A	p.Ala124Thr	p.A124T	ENST00000360948	NM_001012338.2	124	Gcc/Acc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99440009	99440009	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	28	314	0	ENST00000268035.6:c.977G>C	p.Gly326Ala	p.G326A	ENST00000268035	NM_000875.3	326	gGt/gCt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347200	347200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	216	744	0	ENST00000262320.3:c.1811G>T	p.Arg604Ile	p.R604I	ENST00000262320	NM_003502.3	604	aGa/aTa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640689	3640689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	247	971	0	ENST00000294008.3:c.2950G>A	p.Glu984Lys	p.E984K	ENST00000294008	NM_032444.2	984	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788659	3788659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	158	333	0	ENST00000262367.5:c.4295C>A	p.Ser1432Tyr	p.S1432Y	ENST00000262367	NM_004380.2	1432	tCt/tAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3842075	3842075	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	133	334	0	ENST00000262367.5:c.1237C>T	p.Arg413Ter	p.R413*	ENST00000262367	NM_004380.2	413	Cga/Tga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3929909	3929909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	18	489	1	ENST00000262367.5:c.9G>T	p.Glu3Asp	p.E3D	ENST00000262367	NM_004380.2	3	gaG/gaT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857757	9857757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			163	110	584	0	ENST00000330684.3:c.3644G>T	p.Arg1215Ile	p.R1215I	ENST00000330684	NM_001134407.1	1215	aGa/aTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858072	9858072	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	136	642	0	ENST00000330684.3:c.3329C>A	p.Ser1110Ter	p.S1110*	ENST00000330684	NM_001134407.1	1110	tCa/tAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892306	9892306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	16	394	0	ENST00000330684.3:c.2184C>A	p.Phe728Leu	p.F728L	ENST00000330684	NM_001134407.1	728	ttC/ttA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916274	9916274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	40	341	0	ENST00000330684.3:c.2015G>T	p.Arg672Ile	p.R672I	ENST00000330684	NM_001134407.1	672	aGa/aTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923344	9923344	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			168	142	540	0	ENST00000330684.3:c.1943A>C	p.Asn648Thr	p.N648T	ENST00000330684	NM_001134407.1	648	aAt/aCt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032274	10032274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	129	565	1	ENST00000330684.3:c.549C>A	p.Phe183Leu	p.F183L	ENST00000330684	NM_001134407.1	183	ttC/ttA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273941	10273941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	166	903	0	ENST00000330684.3:c.328G>T	p.Ala110Ser	p.A110S	ENST00000330684	NM_001134407.1	110	Gcc/Tcc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783612	50783612	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	161	355	0	ENST00000398568.2:c.3G>T	p.Met1?	p.M1?	ENST00000398568	NM_001042412.1	1	atG/atT																																																																														
CYLD	1540	MSKCC	GRCh37	16	50818289	50818289	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	146	335	0	ENST00000398568.2:c.1867G>T	p.Glu623Ter	p.E623*	ENST00000398568	NM_001042412.1	623	Gaa/Taa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56878418	56878418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	145	391	0	ENST00000308159.5:c.2357G>A	p.Arg786Gln	p.R786Q	ENST00000308159	NM_014669.4	786	cGa/cAa																																																																														
CBFB	865	MSKCC	GRCh37	16	67132617	67132617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	191	442	2	ENST00000412916.2:c.500G>T	p.Arg167Ile	p.R167I	ENST00000412916		167	aGa/aTa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645414	67645414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	175	412	0	ENST00000264010.4:c.679G>A	p.Asp227Asn	p.D227N	ENST00000264010	NM_006565.3	227	Gat/Aat																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662298	67662298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	28	408	0	ENST00000264010.4:c.1544G>A	p.Arg515His	p.R515H	ENST00000264010	NM_006565.3	515	cGc/cAc																																																																														
CDH1	999	MSKCC	GRCh37	16	68835732	68835732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	277	622	0	ENST00000261769.5:c.323G>T	p.Arg108Ile	p.R108I	ENST00000261769	NM_004360.3	108	aGa/aTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827580	72827580	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	27	636	1	ENST00000268489.5:c.9001G>T	p.Glu3001Ter	p.E3001*	ENST00000268489	NM_006885.3	3001	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828294	72828294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	170	640	0	ENST00000268489.5:c.8287G>A	p.Asp2763Asn	p.D2763N	ENST00000268489	NM_006885.3	2763	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923722	72923722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	203	690	0	ENST00000268489.5:c.3356G>A	p.Arg1119Gln	p.R1119Q	ENST00000268489	NM_006885.3	1119	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992268	72992268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	314	890	2	ENST00000268489.5:c.1777G>A	p.Glu593Lys	p.E593K	ENST00000268489	NM_006885.3	593	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992274	72992274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	320	875	1	ENST00000268489.5:c.1771G>A	p.Ala591Thr	p.A591T	ENST00000268489	NM_006885.3	591	Gct/Act																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888096	81888096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	23	432	0	ENST00000359376.3:c.241G>T	p.Asp81Tyr	p.D81Y	ENST00000359376	NM_002661.3	81	Gat/Tat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348079	89348079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	48	934	2	ENST00000301030.4:c.4871C>T	p.Ala1624Val	p.A1624V	ENST00000301030	NM_001256183.1	1624	gCg/gTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348669	89348669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	33	791	0	ENST00000301030.4:c.4281G>T	p.Lys1427Asn	p.K1427N	ENST00000301030	NM_001256183.1	1427	aaG/aaT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349532	89349532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	250	801	0	ENST00000301030.4:c.3418G>A	p.Ala1140Thr	p.A1140T	ENST00000301030	NM_001256183.1	1140	Gcc/Acc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805570	89805570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	190	628	1	ENST00000389301.3:c.4138G>T	p.Ala1380Ser	p.A1380S	ENST00000389301	NM_000135.2	1380	Gct/Tct																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838195	89838195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	206	549	0	ENST00000389301.3:c.2042C>A	p.Ser681Tyr	p.S681Y	ENST00000389301	NM_000135.2	681	tCt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7572931	7572931	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	96	484	0	ENST00000269305.4:c.1178A>G	p.Asp393Gly	p.D393G	ENST00000269305	NM_001126112.2	393	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	110	632	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	317	741	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998919	11998919	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	12	243	0	ENST00000353533.5:c.421G>T	p.Glu141Ter	p.E141*	ENST00000353533	NM_003010.3	141	Gaa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012219	16012219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	200	325	0	ENST00000268712.3:c.2063G>A	p.Arg688Gln	p.R688Q	ENST00000268712	NM_006311.3	688	cGa/cAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16022758	16022758	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	175	305	0	ENST00000268712.3:c.1894G>T	p.Glu632Ter	p.E632*	ENST00000268712	NM_006311.3	632	Gaa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024540	16024540	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	40	553	0	ENST00000268712.3:c.1678G>T	p.Glu560Ter	p.E560*	ENST00000268712	NM_006311.3	560	Gaa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049769	16049769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	151	400	0	ENST00000268712.3:c.1003G>A	p.Glu335Lys	p.E335K	ENST00000268712	NM_006311.3	335	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29486064	29486064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	132	274	0	ENST00000358273.4:c.241C>A	p.Leu81Ile	p.L81I	ENST00000358273	NM_001042492.2	81	Ctc/Atc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562982	29562982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	169	465	0	ENST00000358273.4:c.3917G>A	p.Arg1306Gln	p.R1306Q	ENST00000358273	NM_001042492.2	1306	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29684332	29684332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	53	449	0	ENST00000358273.4:c.7915C>A	p.Leu2639Ile	p.L2639I	ENST00000358273	NM_001042492.2	2639	Ctt/Att																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30315354	30315354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	184	361	0	ENST00000322652.5:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000322652	NM_015355.2	347	Gaa/Aaa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325698	30325698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	78	200	0	ENST00000322652.5:c.1896G>T	p.Met632Ile	p.M632I	ENST00000322652	NM_015355.2	632	atG/atT																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686970	37686970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	223	617	0	ENST00000447079.4:c.3874G>A	p.Glu1292Lys	p.E1292K	ENST00000447079	NM_015083.1	1292	Gag/Aag																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40458275	40458275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	320	952	0	ENST00000345506.4:c.1490C>A	p.Ala497Asp	p.A497D	ENST00000345506	NM_003152.3	497	gCc/gAc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243774	41243774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	211	592	0	ENST00000357654.3:c.3774G>T	p.Glu1258Asp	p.E1258D	ENST00000357654	NM_007294.3	1258	gaG/gaT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244826	41244826	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	235	654	0	ENST00000357654.3:c.2722G>T	p.Glu908Ter	p.E908*	ENST00000357654	NM_007294.3	908	Gaa/Taa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244869	41244869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	210	612	0	ENST00000357654.3:c.2679G>T	p.Lys893Asn	p.K893N	ENST00000357654	NM_007294.3	893	aaG/aaT																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	239	541	0	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740814	58740814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	215	422	0	ENST00000305921.3:c.1719G>T	p.Lys573Asn	p.K573N	ENST00000305921	NM_003620.3	573	aaG/aaT																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59926518	59926518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	262	493	0	ENST00000259008.2:c.479G>T	p.Arg160Ile	p.R160I	ENST00000259008	NM_032043.2	160	aGa/aTa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554341	63554341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	196	649	0	ENST00000307078.5:c.398C>T	p.Ala133Val	p.A133V	ENST00000307078	NM_004655.3	133	gCg/gTg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78765281	78765281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	81	299	0	ENST00000306801.3:c.862C>T	p.Pro288Ser	p.P288S	ENST00000306801	NM_020761.2	288	Cct/Tct																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78867622	78867622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	261	805	0	ENST00000306801.3:c.2358G>T	p.Lys786Asn	p.K786N	ENST00000306801	NM_020761.2	786	aaG/aaT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			137	121	348	0	ENST00000342988.3:c.1612G>A	p.Glu538Lys	p.E538K	ENST00000342988	NM_005359.5	538	Gaa/Aaa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56409133	56409133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	129	309	1	ENST00000348428.3:c.1640C>T	p.Ala547Val	p.A547V	ENST00000348428	NM_006785.3	547	gCt/gTt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212111	5212111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	291	825	0	ENST00000357368.4:c.4920C>A	p.Phe1640Leu	p.F1640L	ENST00000357368	NM_002850.3	1640	ttC/ttA																																																																														
INSR	3643	MSKCC	GRCh37	19	7163175	7163175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	193	639	0	ENST00000302850.5:c.1897A>G	p.Asn633Asp	p.N633D	ENST00000302850	NM_000208.2	633	Aac/Gac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123685	11123685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	252	680	1	ENST00000344626.4:c.2335G>A	p.Asp779Asn	p.D779N	ENST00000344626	NM_003072.3	779	Gac/Aac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132438	11132438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	35	905	3	ENST00000344626.4:c.2654G>A	p.Arg885His	p.R885H	ENST00000344626	NM_003072.3	885	cGc/cAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145662	11145662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	63	801	0	ENST00000344626.4:c.4024G>A	p.Glu1342Lys	p.E1342K	ENST00000344626	NM_003072.3	1342	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170552	11170552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			575	33	884	1	ENST00000344626.4:c.4759G>A	p.Glu1587Lys	p.E1587K	ENST00000344626	NM_003072.3	1587	Gaa/Aaa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15365064	15365064	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	198	563	0	ENST00000263377.2:c.2057T>G	p.Val686Gly	p.V686G	ENST00000263377	NM_058243.2	686	gTt/gGt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366129	15366129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	192	533	5	ENST00000263377.2:c.2026C>T	p.Arg676Trp	p.R676W	ENST00000263377	NM_058243.2	676	Cgg/Tgg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950424	17950424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	126	664	0	ENST00000458235.1:c.1303A>G	p.Thr435Ala	p.T435A	ENST00000458235	NM_000215.3	435	Aca/Gca																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954674	17954674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	317	869	1	ENST00000458235.1:c.220G>T	p.Ala74Ser	p.A74S	ENST00000458235	NM_000215.3	74	Gcc/Tcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211219	36211219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	381	1086	1	ENST00000222270.7:c.970G>A	p.Glu324Lys	p.E324K	ENST00000222270	NM_014727.1	324	Gaa/Aaa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211894	36211894	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	321	963	0	ENST00000222270.7:c.1645G>T	p.Glu549Ter	p.E549*	ENST00000222270	NM_014727.1	549	Gaa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222962	36222962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181607228		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	312	969	2	ENST00000222270.7:c.5591G>A	p.Arg1864Gln	p.R1864Q	ENST00000222270	NM_014727.1	1864	cGa/cAa																																																																														
CD79A	973	MSKCC	GRCh37	19	42383677	42383677	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	195	753	0	ENST00000221972.3:c.452T>C	p.Ile151Thr	p.I151T	ENST00000221972	NM_021601.3	151	aTc/aCc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469546	25469546	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	71	920	1	ENST00000264709.3:c.1222G>T	p.Glu408Ter	p.E408*	ENST00000264709	NM_175629.2	408	Gaa/Taa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25964903	25964903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561088610		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	151	387	0	ENST00000435504.4:c.4303C>T	p.Arg1435Trp	p.R1435W	ENST00000435504		1435	Cgg/Tgg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966540	25966540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	242	655	0	ENST00000435504.4:c.2666C>A	p.Ser889Tyr	p.S889Y	ENST00000435504		889	tCt/tAt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	172	338	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																																																														
CENPA	1058	MSKCC	GRCh37	2	27015053	27015053	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151098324		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	162	422	0	ENST00000335756.4:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000335756	NM_001809.3	52	cGa/cAa																																																																														
ALK	238	MSKCC	GRCh37	2	29416563	29416563	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			492	40	655	1	ENST00000389048.3:c.4390C>T	p.Arg1464Ter	p.R1464*	ENST00000389048	NM_004304.4	1464	Cga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	29445235	29445235	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	46	721	0	ENST00000389048.3:c.3490T>G	p.Phe1164Val	p.F1164V	ENST00000389048	NM_004304.4	1164	Ttc/Gtc																																																																														
ALK	238	MSKCC	GRCh37	2	29449913	29449913	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	359	1020	0	ENST00000389048.3:c.2942T>G	p.Ile981Ser	p.I981S	ENST00000389048	NM_004304.4	981	aTt/aGt																																																																														
ALK	238	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	187	514	0	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga																																																																														
SOS1	6654	MSKCC	GRCh37	2	39234311	39234311	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	116	284	0	ENST00000402219.2:c.2534T>G	p.Leu845Ter	p.L845*	ENST00000402219	NM_005633.3	845	tTa/tGa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39241973	39241973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	98	253	1	ENST00000402219.2:c.1873C>T	p.Arg625Trp	p.R625W	ENST00000402219	NM_005633.3	625	Cgg/Tgg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			128	102	182	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702410	47702410	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			94	69	194	0	ENST00000233146.2:c.2005+1G>A		p.X669_splice	ENST00000233146	NM_000251.2	669																																																																															
MSH6	2956	MSKCC	GRCh37	2	48026290	48026290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147737737		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			118	134	409	2	ENST00000234420.5:c.1168G>A	p.Asp390Asn	p.D390N	ENST00000234420	NM_000179.2	390	Gat/Aat																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027750	48027750	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			142	146	323	0	ENST00000234420.5:c.2628A>C	p.Glu876Asp	p.E876D	ENST00000234420	NM_000179.2	876	gaA/gaC																																																																														
XPO1	7514	MSKCC	GRCh37	2	61706056	61706056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	265	540	0	ENST00000401558.2:c.3115G>A	p.Glu1039Lys	p.E1039K	ENST00000401558	NM_003400.3	1039	Gaa/Aaa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61711231	61711231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	25	333	0	ENST00000401558.2:c.2518G>A	p.Glu840Lys	p.E840K	ENST00000401558	NM_003400.3	840	Gaa/Aaa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715373	61715373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	197	499	0	ENST00000401558.2:c.2240G>T	p.Ser747Ile	p.S747I	ENST00000401558	NM_003400.3	747	aGt/aTt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719832	61719832	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	231	494	0	ENST00000401558.2:c.1436A>C	p.Lys479Thr	p.K479T	ENST00000401558	NM_003400.3	479	aAg/aCg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61720080	61720080	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	148	359	0	ENST00000401558.2:c.1354A>C	p.Asn452His	p.N452H	ENST00000401558	NM_003400.3	452	Aat/Cat																																																																														
XPO1	7514	MSKCC	GRCh37	2	61726855	61726855	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			203	128	295	0	ENST00000401558.2:c.583A>C	p.Lys195Gln	p.K195Q	ENST00000401558	NM_003400.3	195	Aaa/Caa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99203949	99203949	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			161	89	290	0	ENST00000074304.5:c.2812C>T	p.Arg938Ter	p.R938*	ENST00000074304	NM_001134224.1	938	Cga/Tga																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872622	136872622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	152	415	1	ENST00000241393.3:c.876C>A	p.Phe292Leu	p.F292L	ENST00000241393	NM_003467.2	292	ttC/ttA																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873397	136873397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	129	407	0	ENST00000241393.3:c.101C>T	p.Ala34Val	p.A34V	ENST00000241393	NM_003467.2	34	gCt/gTt																																																																														
ACVR1	90	MSKCC	GRCh37	2	158594066	158594066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	126	343	0	ENST00000263640.3:c.1507G>A	p.Asp503Asn	p.D503N	ENST00000263640	NM_001105.4	503	Gac/Aac																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096135	178096135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	189	458	1	ENST00000397062.3:c.1196C>A	p.Ser399Tyr	p.S399Y	ENST00000397062	NM_006164.4	399	tCt/tAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273266	198273266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	171	474	0	ENST00000335508.6:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000335508	NM_012433.2	315	cGa/cAa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285193	198285193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	190	386	0	ENST00000335508.6:c.374C>T	p.Thr125Ile	p.T125I	ENST00000335508	NM_012433.2	125	aCc/aTc																																																																														
CASP8	841	MSKCC	GRCh37	2	202136289	202136289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	120	446	0	ENST00000358485.4:c.533C>A	p.Ser178Tyr	p.S178Y	ENST00000358485	NM_001080125.1	178	tCt/tAt																																																																														
CASP8	841	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	33	413	0	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa																																																																														
INHA	3623	MSKCC	GRCh37	2	220440076	220440076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	42	894	1	ENST00000243786.2:c.929C>T	p.Ala310Val	p.A310V	ENST00000243786	NM_002191.3	310	gCt/gTt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661884	227661884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	223	908	0	ENST00000305123.5:c.1571G>T	p.Arg524Ile	p.R524I	ENST00000305123	NM_005544.2	524	aGa/aTa																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242800926	242800926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	214	785	0	ENST00000334409.5:c.65G>A	p.Gly22Glu	p.G22E	ENST00000334409	NM_005018.2	22	gGa/gAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546557	9546557	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	128	455	0	ENST00000353224.5:c.1465G>T	p.Glu489Ter	p.E489*	ENST00000353224	NM_177990.2	489	Gaa/Taa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546725	9546725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	97	395	0	ENST00000353224.5:c.1297C>T	p.Arg433Trp	p.R433W	ENST00000353224	NM_177990.2	433	Cgg/Tgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9546847	9546847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			148	141	564	0	ENST00000353224.5:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000353224	NM_177990.2	392	tCg/tTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023108	31023108	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147895689		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	25	563	0	ENST00000375687.4:c.2593G>A	p.Glu865Lys	p.E865K	ENST00000375687	NM_015338.5	865	Gaa/Aaa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39690063	39690063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			111	75	155	0	ENST00000361337.2:c.88G>A	p.Asp30Asn	p.D30N	ENST00000361337	NM_003286.2	30	Gat/Aat																																																																														
TOP1	7150	MSKCC	GRCh37	20	39726971	39726971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			93	71	150	0	ENST00000361337.2:c.969G>T	p.Glu323Asp	p.E323D	ENST00000361337	NM_003286.2	323	gaG/gaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944600	40944600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			127	106	377	0	ENST00000373198.4:c.1902G>T	p.Gln634His	p.Q634H	ENST00000373198	NM_133170.3	634	caG/caT																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262885	46262885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	167	408	0	ENST00000371998.3:c.1058G>A	p.Arg353Gln	p.R353Q	ENST00000371998		353	cGa/cAa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268333	46268333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			165	139	357	0	ENST00000371998.3:c.2720G>A	p.Arg907Gln	p.R907Q	ENST00000371998		907	cGa/cAa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252889	36252889	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	155	351	0	ENST00000300305.3:c.473T>G	p.Phe158Cys	p.F158C	ENST00000300305		158	tTt/tGt																																																																														
ERG	2078	MSKCC	GRCh37	21	39762950	39762950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	116	315	0	ENST00000288319.7:c.886C>A	p.Leu296Ile	p.L296I	ENST00000288319	NM_182918.3	296	Ctt/Att																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45657017	45657017	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	205	603	0	ENST00000407780.3:c.139T>G	p.Leu47Val	p.L47V	ENST00000407780	NM_001283052.1	47	Tta/Gta																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24134006	24134006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			194	158	340	0	ENST00000263121.7:c.157C>T	p.Arg53Ter	p.R53*	ENST00000263121	NM_003073.3	53	Cga/Tga																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29106023	29106023	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	100	254	0	ENST00000328354.6:c.817G>T	p.Glu273Ter	p.E273*	ENST00000328354	NM_007194.3	273	Gaa/Taa																																																																														
NF2	4771	MSKCC	GRCh37	22	30038196	30038196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			207	137	364	0	ENST00000338641.4:c.369G>T	p.Lys123Asn	p.K123N	ENST00000338641	NM_000268.3	123	aaG/aaT																																																																														
MLH1	4292	MSKCC	GRCh37	3	37059066	37059066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	164	374	0	ENST00000231790.2:c.860A>G	p.Asn287Ser	p.N287S	ENST00000231790	NM_000249.3	287	aAc/aGc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277291	41277291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	165	323	1	ENST00000349496.5:c.1760G>A	p.Arg587Gln	p.R587Q	ENST00000349496	NM_001904.3	587	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162066	47162066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138005965		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	27	399	0	ENST00000409792.3:c.4060G>A	p.Asp1354Asn	p.D1354N	ENST00000409792	NM_014159.6	1354	Gat/Aat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164327	47164327	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	20	320	0	ENST00000409792.3:c.1799T>G	p.Leu600Ter	p.L600*	ENST00000409792	NM_014159.6	600	tTa/tGa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165140	47165140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			127	112	260	0	ENST00000409792.3:c.986G>A	p.Arg329Gln	p.R329Q	ENST00000409792	NM_014159.6	329	cGg/cAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165167	47165167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			148	121	260	1	ENST00000409792.3:c.959G>A	p.Gly320Asp	p.G320D	ENST00000409792	NM_014159.6	320	gGt/gAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165465	47165465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	179	421	0	ENST00000409792.3:c.661G>A	p.Val221Ile	p.V221I	ENST00000409792	NM_014159.6	221	Gtt/Att																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165843	47165843	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	206	504	0	ENST00000409792.3:c.283G>T	p.Glu95Ter	p.E95*	ENST00000409792	NM_014159.6	95	Gaa/Taa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927995	49927995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	28	635	0	ENST00000296474.3:c.3733C>T	p.Arg1245Cys	p.R1245C	ENST00000296474	NM_002447.2	1245	Cgc/Tgc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49929262	49929262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			276	214	522	0	ENST00000296474.3:c.3281G>A	p.Gly1094Glu	p.G1094E	ENST00000296474	NM_002447.2	1094	gGa/gAa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	242	578	0	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651331	52651331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			212	187	405	0	ENST00000394830.3:c.1765G>A	p.Asp589Asn	p.D589N	ENST00000394830	NM_018313.4	589	Gac/Aac																																																																														
MITF	4286	MSKCC	GRCh37	3	70014097	70014097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	192	498	0	ENST00000352241.4:c.1261G>A	p.Val421Ile	p.V421I	ENST00000352241	NM_198159.2	421	Gtt/Att																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021785	71021785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs112795301		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			140	124	303	0	ENST00000318789.4:c.1573C>T	p.Arg525Ter	p.R525*	ENST00000318789	NM_032682.5	525	Cga/Tga																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114601	73114601	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			121	39	241	0	ENST00000356692.5:c.982G>T	p.Glu328Ter	p.E328*	ENST00000356692		328	Gaa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259409	89259409	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	149	500	0	ENST00000336596.2:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000336596	NM_005233.5	185	Gat/Tat																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670362	134670362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			119	112	510	0	ENST00000398015.3:c.273C>A	p.Phe91Leu	p.F91L	ENST00000398015	NM_004441.4	91	ttC/ttA																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670643	134670643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	26	740	0	ENST00000398015.3:c.554C>A	p.Ser185Tyr	p.S185Y	ENST00000398015	NM_004441.4	185	tCt/tAt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433417	138433417	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	35	460	0	ENST00000289153.2:c.1195C>T	p.Arg399Ter	p.R399*	ENST00000289153	NM_006219.2	399	Cga/Tga																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			198	118	302	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142178201	142178201	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	145	255	0	ENST00000350721.4:c.7217T>G	p.Leu2406Arg	p.L2406R	ENST00000350721	NM_001184.3	2406	cTt/cGt																																																																														
ATR	545	MSKCC	GRCh37	3	142224146	142224146	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	112	238	0	ENST00000350721.4:c.5032-1G>T		p.X1678_splice	ENST00000350721	NM_001184.3	1678																																																																															
ATR	545	MSKCC	GRCh37	3	142232476	142232476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	117	256	0	ENST00000350721.4:c.4508G>A	p.Arg1503Gln	p.R1503Q	ENST00000350721	NM_001184.3	1503	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142259851	142259851	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	206	399	1	ENST00000350721.4:c.3476T>C	p.Met1159Thr	p.M1159T	ENST00000350721	NM_001184.3	1159	aTg/aCg																																																																														
ATR	545	MSKCC	GRCh37	3	142281637	142281637	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	159	435	0	ENST00000350721.4:c.607G>T	p.Glu203Ter	p.E203*	ENST00000350721	NM_001184.3	203	Gaa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142281802	142281802	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	171	461	0	ENST00000350721.4:c.442G>T	p.Glu148Ter	p.E148*	ENST00000350721	NM_001184.3	148	Gaa/Taa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260177	149260177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	209	577	0	ENST00000360632.3:c.716G>T	p.Arg239Ile	p.R239I	ENST00000360632	NM_015472.4	239	aGa/aTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916651	178916651	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			137	136	316	0	ENST00000263967.3:c.38T>C	p.Ile13Thr	p.I13T	ENST00000263967	NM_006218.2	13	aTc/aCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			614	31	534	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952049	178952049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	128	299	0	ENST00000263967.3:c.3104C>T	p.Ala1035Val	p.A1035V	ENST00000263967	NM_006218.2	1035	gCt/gTt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181425	185181425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1435276633		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	165	368	0	ENST00000265026.3:c.1366C>T	p.Arg456Ter	p.R456*	ENST00000265026	NM_004721.4	456	Cga/Tga																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502876	186502876	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	178	333	0	ENST00000323963.5:c.334G>T	p.Glu112Ter	p.E112*	ENST00000323963		112	Gaa/Taa																																																																														
BCL6	604	MSKCC	GRCh37	3	187451474	187451474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145456310		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	157	381	1	ENST00000232014.4:c.8C>T	p.Ser3Leu	p.S3L	ENST00000232014	NM_001130845.1	3	tCg/tTg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980404	1980404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	354	930	1	ENST00000382891.5:c.3866G>A	p.Gly1289Asp	p.G1289D	ENST00000382891	NM_133335.3	1289	gGc/gAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129983	55129983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	226	560	1	ENST00000257290.5:c.517G>A	p.Asp173Asn	p.D173N	ENST00000257290	NM_006206.4	173	Gac/Aac																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133894	55133894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	90	319	0	ENST00000257290.5:c.1107G>T	p.Lys369Asn	p.K369N	ENST00000257290	NM_006206.4	369	aaG/aaT																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146523	55146523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			136	96	313	0	ENST00000257290.5:c.2197G>A	p.Asp733Asn	p.D733N	ENST00000257290	NM_006206.4	733	Gac/Aac																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146592	55146592	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs555347387		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	173	385	0	ENST00000257290.5:c.2266G>A	p.Asp756Asn	p.D756N	ENST00000257290	NM_006206.4	756	Gac/Aac																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146636	55146636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	91	480	0	ENST00000257290.5:c.2310G>T	p.Lys770Asn	p.K770N	ENST00000257290	NM_006206.4	770	aaG/aaT																																																																														
KIT	3815	MSKCC	GRCh37	4	55593628	55593628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	149	402	0	ENST00000288135.5:c.1694G>A	p.Gly565Glu	p.G565E	ENST00000288135	NM_000222.2	565	gGa/gAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55602916	55602916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	137	395	1	ENST00000288135.5:c.2626G>A	p.Asp876Asn	p.D876N	ENST00000288135	NM_000222.2	876	Gat/Aat																																																																														
KDR	3791	MSKCC	GRCh37	4	55953804	55953804	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	168	465	0	ENST00000263923.4:c.3632A>C	p.Lys1211Thr	p.K1211T	ENST00000263923	NM_002253.2	1211	aAa/aCa																																																																														
KDR	3791	MSKCC	GRCh37	4	55956198	55956198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	41	514	0	ENST00000263923.4:c.3117G>T	p.Lys1039Asn	p.K1039N	ENST00000263923	NM_002253.2	1039	aaG/aaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55961766	55961766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	112	411	0	ENST00000263923.4:c.2795G>T	p.Arg932Ile	p.R932I	ENST00000263923	NM_002253.2	932	aGa/aTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55970882	55970882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	164	481	0	ENST00000263923.4:c.1915G>A	p.Asp639Asn	p.D639N	ENST00000263923	NM_002253.2	639	Gac/Aac																																																																														
KDR	3791	MSKCC	GRCh37	4	55970985	55970985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	174	545	0	ENST00000263923.4:c.1812G>T	p.Lys604Asn	p.K604N	ENST00000263923	NM_002253.2	604	aaG/aaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55979589	55979589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	161	470	0	ENST00000263923.4:c.858G>T	p.Lys286Asn	p.K286N	ENST00000263923	NM_002253.2	286	aaG/aaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55981172	55981172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	150	401	0	ENST00000263923.4:c.527G>T	p.Arg176Ile	p.R176I	ENST00000263923	NM_002253.2	176	aGa/aTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361171	66361171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			145	107	313	0	ENST00000273854.3:c.1001C>T	p.Thr334Ile	p.T334I	ENST00000273854	NM_004439.5	334	aCc/aTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106162587	106162587	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			109	108	225	1	ENST00000380013.4:c.3500+1G>A		p.X1167_splice	ENST00000380013	NM_001127208.2	1167																																																																															
TET2	54790	MSKCC	GRCh37	4	106196499	106196499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			127	108	428	0	ENST00000380013.4:c.4832C>A	p.Ser1611Tyr	p.S1611Y	ENST00000380013	NM_001127208.2	1611	tCt/tAt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007320	143007320	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			177	104	305	0	ENST00000262992.4:c.2464G>T	p.Glu822Ter	p.E822*	ENST00000262992	NM_001101669.1	822	Gaa/Taa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143029259	143029259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	58	221	0	ENST00000262992.4:c.2361G>T	p.Lys787Asn	p.K787N	ENST00000262992	NM_001101669.1	787	aaG/aaT																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143129648	143129648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	157	346	0	ENST00000262992.4:c.1002G>T	p.Glu334Asp	p.E334D	ENST00000262992	NM_001101669.1	334	gaG/gaT																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143130163	143130163	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	161	356	0	ENST00000262992.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000262992	NM_001101669.1	285	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251901	153251901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	168	375	0	ENST00000281708.4:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000281708	NM_033632.3	369	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271212	153271212	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	102	170	0	ENST00000281708.4:c.566A>G	p.Lys189Arg	p.K189R	ENST00000281708	NM_033632.3	189	aAa/aGa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524374	187524374	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	143	495	0	ENST00000441802.2:c.11306T>C	p.Phe3769Ser	p.F3769S	ENST00000441802	NM_005245.3	3769	tTt/tCt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540113	187540113	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	115	406	0	ENST00000441802.2:c.7627A>C	p.Asn2543His	p.N2543H	ENST00000441802	NM_005245.3	2543	Aat/Cat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540605	187540605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	150	412	0	ENST00000441802.2:c.7135G>A	p.Asp2379Asn	p.D2379N	ENST00000441802	NM_005245.3	2379	Gac/Aac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541943	187541943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	159	498	0	ENST00000441802.2:c.5797A>G	p.Thr1933Ala	p.T1933A	ENST00000441802	NM_005245.3	1933	Act/Gct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557242	187557242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	30	476	0	ENST00000441802.2:c.4120G>A	p.Ala1374Thr	p.A1374T	ENST00000441802	NM_005245.3	1374	Gct/Act																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557804	187557804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	159	402	0	ENST00000441802.2:c.3907G>A	p.Glu1303Lys	p.E1303K	ENST00000441802	NM_005245.3	1303	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628125	187628125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	282	646	0	ENST00000441802.2:c.2857G>A	p.Asp953Asn	p.D953N	ENST00000441802	NM_005245.3	953	Gat/Aat																																																																														
SDHA	6389	MSKCC	GRCh37	5	233619	233619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			128	111	277	0	ENST00000264932.6:c.923C>T	p.Thr308Met	p.T308M	ENST00000264932	NM_004168.2	308	aCg/aTg																																																																														
SDHA	6389	MSKCC	GRCh37	5	251119	251119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	17	248	0	ENST00000264932.6:c.1564C>A	p.His522Asn	p.H522N	ENST00000264932	NM_004168.2	522	Cat/Aat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31410987	31410987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	196	586	0	ENST00000344624.3:c.3533G>A	p.Arg1178Gln	p.R1178Q	ENST00000344624		1178	cGa/cAa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874597	35874597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	137	463	0	ENST00000303115.3:c.753C>A	p.Phe251Leu	p.F251L	ENST00000303115	NM_002185.3	251	ttC/ttA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945727	38945727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			117	101	232	0	ENST00000357387.3:c.4499C>T	p.Ala1500Val	p.A1500V	ENST00000357387	NM_152756.3	1500	gCc/gTc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38947377	38947377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			93	78	164	0	ENST00000357387.3:c.4303G>T	p.Asp1435Tyr	p.D1435Y	ENST00000357387	NM_152756.3	1435	Gat/Tat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950099	38950099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	157	486	0	ENST00000357387.3:c.3851C>T	p.Ser1284Leu	p.S1284L	ENST00000357387	NM_152756.3	1284	tCg/tTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950364	38950364	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	147	405	0	ENST00000357387.3:c.3586G>T	p.Glu1196Ter	p.E1196*	ENST00000357387	NM_152756.3	1196	Gaa/Taa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950622	38950622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	144	374	2	ENST00000357387.3:c.3328C>T	p.Arg1110Cys	p.R1110C	ENST00000357387	NM_152756.3	1110	Cgt/Tgt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38958874	38958874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	115	233	0	ENST00000357387.3:c.2238C>A	p.Phe746Leu	p.F746L	ENST00000357387	NM_152756.3	746	ttC/ttA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38959396	38959396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			164	116	287	0	ENST00000357387.3:c.2079C>A	p.Asn693Lys	p.N693K	ENST00000357387	NM_152756.3	693	aaC/aaA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38962617	38962617	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			177	112	295	0	ENST00000357387.3:c.1638G>A	p.Trp546Ter	p.W546*	ENST00000357387	NM_152756.3	546	tgG/tgA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38996935	38996935	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	189	413	0	ENST00000357387.3:c.442C>T	p.Arg148Ter	p.R148*	ENST00000357387	NM_152756.3	148	Cga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39003697	39003697	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	162	276	0	ENST00000357387.3:c.223G>T	p.Glu75Ter	p.E75*	ENST00000357387	NM_152756.3	75	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67575478	67575478	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	172	332	0	ENST00000274335.5:c.551A>C	p.Asp184Ala	p.D184A	ENST00000274335		184	gAc/gCc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79952236	79952236	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	86	223	0	ENST00000265081.6:c.244G>T	p.Glu82Ter	p.E82*	ENST00000265081	NM_002439.4	82	Gaa/Taa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79961137	79961137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			102	330	476	0	ENST00000265081.6:c.534G>T	p.Lys178Asn	p.K178N	ENST00000265081	NM_002439.4	178	aaG/aaT																																																																														
MSH3	4437	MSKCC	GRCh37	5	80021286	80021286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	162	340	0	ENST00000265081.6:c.1355G>T	p.Arg452Ile	p.R452I	ENST00000265081	NM_002439.4	452	aGa/aTa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80057459	80057459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200337887		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			156	90	232	0	ENST00000265081.6:c.1858G>A	p.Asp620Asn	p.D620N	ENST00000265081	NM_002439.4	620	Gac/Aac																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672759	86672759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	126	291	0	ENST00000274376.6:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000274376	NM_002890.2	749	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112090693	112090693	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			120	79	207	0	ENST00000257430.4:c.106A>C	p.Lys36Gln	p.K36Q	ENST00000257430	NM_000038.5	36	Aaa/Caa																																																																														
APC	324	MSKCC	GRCh37	5	112176660	112176660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			113	74	248	0	ENST00000257430.4:c.5369G>T	p.Arg1790Ile	p.R1790I	ENST00000257430	NM_000038.5	1790	aGa/aTa																																																																														
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	34	299	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112179582	112179582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	112	315	0	ENST00000257430.4:c.8291C>A	p.Ser2764Tyr	p.S2764Y	ENST00000257430	NM_000038.5	2764	tCt/tAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131925500	131925500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	129	226	0	ENST00000265335.6:c.1423C>A	p.Leu475Ile	p.L475I	ENST00000265335		475	Ctt/Att																																																																														
RAD50	10111	MSKCC	GRCh37	5	131951738	131951738	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs77642085		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			128	90	197	0	ENST00000265335.6:c.3080G>T	p.Arg1027Ile	p.R1027I	ENST00000265335		1027	aGa/aTa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149499611	149499611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	180	554	0	ENST00000261799.4:c.2662T>C	p.Ser888Pro	p.S888P	ENST00000261799	NM_002609.3	888	Tcc/Ccc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149513278	149513278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	185	647	2	ENST00000261799.4:c.805C>T	p.Pro269Ser	p.P269S	ENST00000261799	NM_002609.3	269	Cct/Tct																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149516607	149516607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148272095		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	228	750	2	ENST00000261799.4:c.4C>T	p.Arg2Trp	p.R2W	ENST00000261799	NM_002609.3	2	Cgg/Tgg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638900	176638900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	254	561	0	ENST00000439151.2:c.3500G>A	p.Arg1167His	p.R1167H	ENST00000439151	NM_022455.4	1167	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709529	176709529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			161	124	283	0	ENST00000439151.2:c.5956C>T	p.Arg1986Cys	p.R1986C	ENST00000439151	NM_022455.4	1986	Cgc/Tgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038418	180038418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	247	882	0	ENST00000261937.6:c.3599C>T	p.Ser1200Leu	p.S1200L	ENST00000261937	NM_182925.4	1200	tCg/tTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045921	180045921	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			119	110	548	0	ENST00000261937.6:c.2851-1G>A		p.X951_splice	ENST00000261937	NM_182925.4	951																																																																															
E2F3	1871	MSKCC	GRCh37	6	20486949	20486949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188266138		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			138	120	234	0	ENST00000346618.3:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000346618	NM_001949.4	305	cGa/cAa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30676062	30676062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	176	469	0	ENST00000376406.3:c.2294C>T	p.Thr765Ile	p.T765I	ENST00000376406	NM_014641.2	765	aCc/aTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163542	32163542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			198	178	629	0	ENST00000375023.3:c.5684C>T	p.Ser1895Phe	p.S1895F	ENST00000375023	NM_004557.3	1895	tCt/tTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169036	32169036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	229	858	1	ENST00000375023.3:c.3997C>T	p.Arg1333Cys	p.R1333C	ENST00000375023	NM_004557.3	1333	Cgt/Tgt																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800433	32800433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	312	974	0	ENST00000374899.4:c.1114G>A	p.Glu372Lys	p.E372K	ENST00000374899	NM_018833.2	372	Gaa/Aaa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289240	33289240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	176	578	0	ENST00000374542.5:c.312G>T	p.Glu104Asp	p.E104D	ENST00000374542	NM_001141970.1	104	gaG/gaT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956553	93956553	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			138	143	293	0	ENST00000369303.4:c.2683C>T	p.Arg895Ter	p.R895*	ENST00000369303	NM_004440.3	895	Cga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066675	94066675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	209	473	0	ENST00000369303.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000369303	NM_004440.3	362	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609843	117609843	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	149	516	0	ENST00000368508.3:c.6856G>T	p.Glu2286Ter	p.E2286*	ENST00000368508	NM_002944.2	2286	Gaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658382	117658382	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	38	646	0	ENST00000368508.3:c.5201A>C	p.Lys1734Thr	p.K1734T	ENST00000368508	NM_002944.2	1734	aAg/aCg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117665230	117665230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	78	218	0	ENST00000368508.3:c.4517G>T	p.Arg1506Ile	p.R1506I	ENST00000368508	NM_002944.2	1506	aGa/aTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686322	117686322	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141385549		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			91	82	240	0	ENST00000368508.3:c.3019G>A	p.Gly1007Arg	p.G1007R	ENST00000368508	NM_002944.2	1007	Gga/Aga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686823	117686823	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	114	400	0	ENST00000368508.3:c.2894T>A	p.Phe965Tyr	p.F965Y	ENST00000368508	NM_002944.2	965	tTt/tAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687431	117687431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			290	28	295	1	ENST00000368508.3:c.2620G>T	p.Glu874Ter	p.E874*	ENST00000368508	NM_002944.2	874	Gaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710875	117710875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140178288		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	127	403	0	ENST00000368508.3:c.1397G>A	p.Arg466Gln	p.R466Q	ENST00000368508	NM_002944.2	466	cGa/cAa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192545	138192545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	151	364	0	ENST00000237289.4:c.181C>T	p.Arg61Trp	p.R61W	ENST00000237289	NM_001270507.1	61	Cgg/Tgg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023160	150023160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	217	478	0	ENST00000253339.5:c.103C>T	p.Arg35Trp	p.R35W	ENST00000253339		35	Cgg/Tgg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201885	152201885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	132	289	0	ENST00000206249.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000206249	NM_000125.3	247	Gaa/Aaa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265535	152265535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	179	537	1	ENST00000206249.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000206249	NM_000125.3	330	Gag/Aag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152382257	152382257	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	120	274	0	ENST00000206249.3:c.1367C>A	p.Ser456Tyr	p.S456Y	ENST00000206249	NM_000125.3	456	tCt/tAt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522598	157522598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	225	577	0	ENST00000346085.5:c.4870C>T	p.Arg1624Ter	p.R1624*	ENST00000346085	NM_020732.3	1624	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528546	157528546	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	203	693	0	ENST00000346085.5:c.6271A>C	p.Ile2091Leu	p.I2091L	ENST00000346085	NM_020732.3	2091	Atc/Ctc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6042116	6042116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			123	105	224	0	ENST00000265849.7:c.505C>T	p.Arg169Cys	p.R169C	ENST00000265849	NM_000535.5	169	Cgc/Tgc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946090	13946090	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	103	316	0	ENST00000405192.2:c.1006C>T	p.Arg336Ter	p.R336*	ENST00000405192	NM_001163147.1	336	Cga/Tga																																																																														
ETV1	2115	MSKCC	GRCh37	7	14027749	14027749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	122	311	0	ENST00000405192.2:c.95G>T	p.Arg32Ile	p.R32I	ENST00000405192	NM_001163147.1	32	aGa/aTa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459453	50459453	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			105	64	240	0	ENST00000331340.3:c.742G>T	p.Glu248Ter	p.E248*	ENST00000331340	NM_006060.4	248	Gaa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210116	55210116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			204	184	396	0	ENST00000275493.2:c.226C>A	p.Leu76Ile	p.L76I	ENST00000275493	NM_005228.3	76	Ctt/Att																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211097	55211097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	26	410	0	ENST00000275493.2:c.340G>A	p.Glu114Lys	p.E114K	ENST00000275493	NM_005228.3	114	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81331962	81331962	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201768315		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			105	81	213	0	ENST00000222390.5:c.2122C>T	p.Arg708Ter	p.R708*	ENST00000222390	NM_000601.4	708	Cga/Tga																																																																														
HGF	3082	MSKCC	GRCh37	7	81381567	81381567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			126	97	203	0	ENST00000222390.5:c.494C>T	p.Ser165Leu	p.S165L	ENST00000222390	NM_000601.4	165	tCg/tTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81386512	81386512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	128	350	0	ENST00000222390.5:c.475G>A	p.Glu159Lys	p.E159K	ENST00000222390	NM_000601.4	159	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116411728	116411728	+	intron_variant	Intron	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			792	63	861	0	ENST00000397752.3:c.2887+20C>A		p.*963*	ENST00000397752	NM_000245.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140481451	140481451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	143	424	0	ENST00000288602.6:c.1357C>T	p.Pro453Ser	p.P453S	ENST00000288602	NM_004333.4	453	Cct/Tct																																																																														
EZH2	2146	MSKCC	GRCh37	7	148504755	148504755	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	208	516	0	ENST00000320356.2:c.2239G>T	p.Glu747Ter	p.E747*	ENST00000320356	NM_004456.4	747	Gaa/Taa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148513849	148513849	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	160	405	0	ENST00000320356.2:c.1432G>T	p.Glu478Ter	p.E478*	ENST00000320356	NM_004456.4	478	Gaa/Taa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148524317	148524317	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	142	345	0	ENST00000320356.2:c.667A>T	p.Ile223Phe	p.I223F	ENST00000320356	NM_004456.4	223	Att/Ttt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836804	151836804	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	217	451	0	ENST00000262189.6:c.14416C>T	p.Arg4806Ter	p.R4806*	ENST00000262189	NM_170606.2	4806	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845426	151845426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	26	677	1	ENST00000262189.6:c.13586G>A	p.Arg4529His	p.R4529H	ENST00000262189	NM_170606.2	4529	cGt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873896	151873896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	162	476	0	ENST00000262189.6:c.8642G>T	p.Arg2881Ile	p.R2881I	ENST00000262189	NM_170606.2	2881	aGa/aTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879203	151879203	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	156	538	0	ENST00000262189.6:c.5742T>A	p.Phe1914Leu	p.F1914L	ENST00000262189	NM_170606.2	1914	ttT/ttA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880126	151880126	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146495785		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	203	413	0	ENST00000262189.6:c.5198C>T	p.Ser1733Leu	p.S1733L	ENST00000262189	NM_170606.2	1733	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132811	152132811	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	228	618	0	ENST00000262189.6:c.61G>T	p.Glu21Ter	p.E21*	ENST00000262189	NM_170606.2	21	Gag/Tag																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23539127	23539127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	137	457	0	ENST00000380871.4:c.312G>T	p.Leu104Phe	p.L104F	ENST00000380871	NM_006167.3	104	ttG/ttT																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187104	38187104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148855934		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	287	802	0	ENST00000317025.8:c.1373C>T	p.Ala458Val	p.A458V	ENST00000317025	NM_023034.1	458	gCg/gTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864758	68864758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	18	495	0	ENST00000288368.4:c.129G>T	p.Glu43Asp	p.E43D	ENST00000288368	NM_024870.2	43	gaG/gaT																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931805	68931805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	104	397	0	ENST00000288368.4:c.235G>T	p.Asp79Tyr	p.D79Y	ENST00000288368	NM_024870.2	79	Gac/Tac																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931896	68931896	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	154	464	0	ENST00000288368.4:c.326T>G	p.Phe109Cys	p.F109C	ENST00000288368	NM_024870.2	109	tTt/tGt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950493	68950493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	110	351	0	ENST00000288368.4:c.805G>A	p.Asp269Asn	p.D269N	ENST00000288368	NM_024870.2	269	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021660	69021660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	90	369	0	ENST00000288368.4:c.2948G>A	p.Ser983Asn	p.S983N	ENST00000288368	NM_024870.2	983	aGc/aAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021764	69021764	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	30	457	0	ENST00000288368.4:c.3052G>T	p.Glu1018Ter	p.E1018*	ENST00000288368	NM_024870.2	1018	Gaa/Taa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028028	69028028	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	106	411	0	ENST00000288368.4:c.3187A>C	p.Lys1063Gln	p.K1063Q	ENST00000288368	NM_024870.2	1063	Aag/Cag																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868912	117868912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			142	98	278	0	ENST00000297338.2:c.787G>A	p.Asp263Asn	p.D263N	ENST00000297338	NM_006265.2	263	Gat/Aat																																																																														
AGO2	27161	MSKCC	GRCh37	8	141569503	141569503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	35	440	0	ENST00000220592.5:c.781G>T	p.Glu261Ter	p.E261*	ENST00000220592	NM_012154.3	261	Gaa/Taa																																																																														
CD274	29126	MSKCC	GRCh37	9	5462929	5462929	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	116	259	2	ENST00000381577.3:c.490G>T	p.Glu164Ter	p.E164*	ENST00000381577	NM_014143.3	164	Gaa/Taa																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5563174	5563174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	158	296	0	ENST00000397747.3:c.779G>T	p.Arg260Ile	p.R260I	ENST00000397747	NM_025239.3	260	aGa/aTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341119	8341119	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	14	400	1	ENST00000356435.5:c.5097C>A	p.Tyr1699Ter	p.Y1699*	ENST00000356435		1699	taC/taA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341130	8341130	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			161	120	380	0	ENST00000356435.5:c.5086G>T	p.Gly1696Ter	p.G1696*	ENST00000356435		1696	Gga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341925	8341925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	18	364	0	ENST00000356435.5:c.4715G>T	p.Arg1572Ile	p.R1572I	ENST00000356435		1572	aGa/aTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376627	8376627	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	132	413	0	ENST00000356435.5:c.4486C>T	p.Arg1496Ter	p.R1496*	ENST00000356435		1496	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485254	8485254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	25	412	0	ENST00000356435.5:c.3126G>T	p.Glu1042Asp	p.E1042D	ENST00000356435		1042	gaG/gaT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521502	8521502	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	183	531	0	ENST00000356435.5:c.736G>T	p.Glu246Ter	p.E246*	ENST00000356435		246	Gaa/Taa																																																																														
TEK	7010	MSKCC	GRCh37	9	27197484	27197484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	184	652	1	ENST00000380036.4:c.1796C>T	p.Ser599Leu	p.S599L	ENST00000380036	NM_000459.3	599	tCg/tTg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966671	36966671	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	179	502	0	ENST00000358127.4:c.655T>G	p.Phe219Val	p.F219V	ENST00000358127	NM_001280556.1	219	Ttc/Gtc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412494	80412494	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	166	315	0	ENST00000286548.4:c.547C>T	p.Arg183Ter	p.R183*	ENST00000286548	NM_002072.3	183	Cga/Tga																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430668	80430668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	174	394	0	ENST00000286548.4:c.340C>T	p.Arg114Ter	p.R114*	ENST00000286548	NM_002072.3	114	Cga/Tga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342691	87342691	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	135	513	0	ENST00000277120.3:c.976G>T	p.Glu326Ter	p.E326*	ENST00000277120		326	Gag/Tag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270558	98270558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			88	103	165	0	ENST00000331920.6:c.86G>A	p.Gly29Glu	p.G29E	ENST00000331920	NM_000264.3	29	gGa/gAa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894935	101894935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	127	269	0	ENST00000374994.4:c.488A>G	p.Asp163Gly	p.D163G	ENST00000374994	NM_004612.2	163	gAc/gGc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250350	110250350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	142	960	1	ENST00000374672.4:c.325C>A	p.Leu109Ile	p.L109I	ENST00000374672	NM_004235.4	109	Ctc/Atc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128206860	128206860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	19	363	0	ENST00000265960.3:c.1363C>T	p.Leu455Phe	p.L455F	ENST00000265960	NM_001006617.1	455	Ctc/Ttc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128246746	128246746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	202	492	0	ENST00000265960.3:c.1183C>T	p.Arg395Ter	p.R395*	ENST00000265960	NM_001006617.1	395	Cga/Tga																																																																														
ABL1	25	MSKCC	GRCh37	9	133755947	133755947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	190	557	0	ENST00000318560.5:c.1574C>T	p.Ala525Val	p.A525V	ENST00000318560	NM_005157.4	525	gCc/gTc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772842	135772842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	269	538	0	ENST00000298552.3:c.2781G>T	p.Lys927Asn	p.K927N	ENST00000298552	NM_001162426.1	927	aaG/aaT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393687	139393687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	275	898	0	ENST00000277541.6:c.5959G>T	p.Asp1987Tyr	p.D1987Y	ENST00000277541	NM_017617.3	1987	Gac/Tac																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564417	139564417	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143123347		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	269	922	5	ENST00000308874.7:c.365G>A	p.Arg122His	p.R122H	ENST00000308874		122	cGc/cAc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841310	15841310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	197	484	0	ENST00000307771.7:c.1394G>T	p.Gly465Val	p.G465V	ENST00000307771	NM_005089.3	465	gGc/gTc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20150333	20150333	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	117	350	0	ENST00000379607.5:c.304A>T	p.Ser102Cys	p.S102C	ENST00000379607	NM_001412.3	102	Agt/Tgt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921447	39921447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	115	597	0	ENST00000378444.4:c.4373T>C	p.Val1458Ala	p.V1458A	ENST00000378444	NM_001123385.1	1458	gTc/gCc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932170	39932170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	174	882	0	ENST00000378444.4:c.2429G>A	p.Arg810Gln	p.R810Q	ENST00000378444	NM_001123385.1	810	cGa/cAa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932683	39932683	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	108	947	0	ENST00000378444.4:c.1916T>G	p.Phe639Cys	p.F639C	ENST00000378444	NM_001123385.1	639	tTt/tGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820533	44820533	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			204	138	356	0	ENST00000377967.4:c.230T>G	p.Val77Gly	p.V77G	ENST00000377967	NM_021140.2	77	gTt/gGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918694	44918694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			177	165	412	0	ENST00000377967.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000377967	NM_021140.2	393	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041645	47041645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	134	697	2	ENST00000329236.7:c.1636G>A	p.Asp546Asn	p.D546N	ENST00000329236	NM_001204466.1	546	Gac/Aac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247028	53247028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	99	664	1	ENST00000375401.3:c.472G>A	p.Glu158Lys	p.E158K	ENST00000375401	NM_004187.3	158	Gaa/Aaa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247039	53247039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	243	672	0	ENST00000375401.3:c.461G>A	p.Arg154His	p.R154H	ENST00000375401	NM_004187.3	154	cGc/cAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411810	63411810	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	180	914	0	ENST00000330258.3:c.1357C>A	p.Leu453Ile	p.L453I	ENST00000330258	NM_152424.3	453	Ctt/Att																																																																														
MED12	9968	MSKCC	GRCh37	X	70338650	70338650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	151	741	4	ENST00000374080.3:c.46C>T	p.Arg16Trp	p.R16W	ENST00000374080		16	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76776304	76776304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	170	574	0	ENST00000373344.5:c.7162G>A	p.Glu2388Lys	p.E2388K	ENST00000373344	NM_000489.3	2388	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76776955	76776955	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	126	437	0	ENST00000373344.5:c.6997G>T	p.Glu2333Ter	p.E2333*	ENST00000373344	NM_000489.3	2333	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76778812	76778812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	137	458	0	ENST00000373344.5:c.6767C>A	p.Ser2256Tyr	p.S2256Y	ENST00000373344	NM_000489.3	2256	tCt/tAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76855046	76855046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	117	382	0	ENST00000373344.5:c.5790G>T	p.Lys1930Asn	p.K1930N	ENST00000373344	NM_000489.3	1930	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76889193	76889193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			105	116	269	0	ENST00000373344.5:c.4817G>T	p.Ser1606Ile	p.S1606I	ENST00000373344	NM_000489.3	1606	aGt/aTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76890192	76890192	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	48	332	0	ENST00000373344.5:c.4702G>A	p.Val1568Ile	p.V1568I	ENST00000373344	NM_000489.3	1568	Gtt/Att																																																																														
ATRX	546	MSKCC	GRCh37	X	76907720	76907720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	239	527	0	ENST00000373344.5:c.4441C>T	p.Arg1481Trp	p.R1481W	ENST00000373344	NM_000489.3	1481	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76912075	76912075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			198	221	401	0	ENST00000373344.5:c.4189G>A	p.Glu1397Lys	p.E1397K	ENST00000373344	NM_000489.3	1397	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937356	76937356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	162	370	0	ENST00000373344.5:c.3392G>T	p.Arg1131Ile	p.R1131I	ENST00000373344	NM_000489.3	1131	aGa/aTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937587	76937587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	102	365	0	ENST00000373344.5:c.3161C>A	p.Ser1054Tyr	p.S1054Y	ENST00000373344	NM_000489.3	1054	tCt/tAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937850	76937850	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs138256318		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	141	541	0	ENST00000373344.5:c.2898G>T	p.Glu966Asp	p.E966D	ENST00000373344	NM_000489.3	966	gaG/gaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76938406	76938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	148	618	0	ENST00000373344.5:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000373344	NM_000489.3	781	cGa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938640	76938640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	123	562	0	ENST00000373344.5:c.2108C>A	p.Ser703Tyr	p.S703Y	ENST00000373344	NM_000489.3	703	tCt/tAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76938995	76938995	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	215	553	0	ENST00000373344.5:c.1753G>T	p.Glu585Ter	p.E585*	ENST00000373344	NM_000489.3	585	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939417	76939417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	174	668	0	ENST00000373344.5:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000373344	NM_000489.3	444	cGa/cAa																																																																														
BTK	695	MSKCC	GRCh37	X	100613678	100613678	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	160	451	2	ENST00000308731.7:c.901G>T	p.Glu301Ter	p.E301*	ENST00000308731	NM_000061.2	301	Gaa/Taa																																																																														
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	170	584	0	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																														
XIAP	331	MSKCC	GRCh37	X	123034462	123034462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			207	117	378	0	ENST00000355640.3:c.1219C>A	p.Leu407Ile	p.L407I	ENST00000355640		407	Ctt/Att																																																																														
STAG2	10735	MSKCC	GRCh37	X	123190069	123190069	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	69	351	0	ENST00000218089.9:c.1288G>T	p.Glu430Ter	p.E430*	ENST00000218089	NM_001042749.1	430	Gaa/Taa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123202452	123202452	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	113	393	0	ENST00000218089.9:c.2304T>G	p.Phe768Leu	p.F768L	ENST00000218089	NM_001042749.1	768	ttT/ttG																																																																														
STAG2	10735	MSKCC	GRCh37	X	123211862	123211862	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	105	409	0	ENST00000218089.9:c.2729T>A	p.Ile910Lys	p.I910K	ENST00000218089	NM_001042749.1	910	aTa/aAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215251	123215251	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			110	171	294	0	ENST00000218089.9:c.2797G>T	p.Glu933Ter	p.E933*	ENST00000218089	NM_001042749.1	933	Gaa/Taa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220483	123220483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	153	562	0	ENST00000218089.9:c.3140C>A	p.Ser1047Tyr	p.S1047Y	ENST00000218089	NM_001042749.1	1047	tCt/tAt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224466	123224466	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	116	480	0	ENST00000218089.9:c.3319G>T	p.Glu1107Ter	p.E1107*	ENST00000218089	NM_001042749.1	1107	Gaa/Taa																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504048	123504048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			106	106	285	0	ENST00000371139.4:c.224G>T	p.Arg75Ile	p.R75I	ENST00000371139	NM_001114937.2	75	aGa/aTa																																																																														
FAM58A	0	MSKCC	GRCh37	X	152861577	152861577	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149734965		P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	111	737	0	ENST00000406277.2:c.175G>A	p.Glu59Lys	p.E59K	ENST00000406277	NM_152274.4	59	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447310	49447310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	254	610	0	ENST00000301067.7:c.788G>T	p.Arg263Leu	p.R263L	ENST00000301067	NM_003482.3	263	cGc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447309	49447309	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	252	609	0	ENST00000301067.7:c.789del	p.Lys264AsnfsTer40	p.K264Nfs*40	ENST00000301067	NM_003482.3	263	cgC/cg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	452	970	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
AR	367	MSKCC	GRCh37	X	66766450	66766450	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	122	215	0	ENST00000374690.3:c.1462C>T	p.Gln488Ter	p.Q488*	ENST00000374690	NM_000044.3	488	Cag/Tag																																																																														
NF2	4771	MSKCC	GRCh37	22	30069345	30069345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	188	688	0	ENST00000338641.4:c.1210G>A	p.Glu404Lys	p.E404K	ENST00000338641	NM_000268.3	404	Gag/Aag																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910647	29910647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	243	1346	0	ENST00000376809.5:c.187G>A	p.Asp63Asn	p.D63N	ENST00000376809	NM_002116.7	63	Gac/Aac																																																																														
CDH1	999	MSKCC	GRCh37	16	68772290	68772290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	439	942	0	ENST00000261769.5:c.139G>A	p.Glu47Lys	p.E47K	ENST00000261769	NM_004360.3	47	Gag/Aag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205323	38205323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1444	208	773	0	ENST00000317025.8:c.367G>A	p.Glu123Lys	p.E123K	ENST00000317025	NM_023034.1	123	Gaa/Aaa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034489	47034489	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			88	426	367	0	ENST00000329236.7:c.343C>T	p.Gln115Ter	p.Q115*	ENST00000329236	NM_001204466.1	115	Cag/Tag																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115282512	115282512	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	64	306	0	ENST00000438362.2:c.139-1G>C		p.X47_splice	ENST00000438362	NM_001242891.1	47																																																																															
INHA	3623	MSKCC	GRCh37	2	220439518	220439518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	174	681	1	ENST00000243786.2:c.371G>A	p.Arg124His	p.R124H	ENST00000243786	NM_002191.3	124	cGc/cAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120512242	120512242	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			741	155	482	0	ENST00000256646.2:c.1000G>C	p.Asp334His	p.D334H	ENST00000256646	NM_024408.3	334	Gac/Cac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416091	49416091	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	684	592	0	ENST00000301067.7:c.16384G>C	p.Asp5462His	p.D5462H	ENST00000301067	NM_003482.3	5462	Gat/Cat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49449083	49449083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			853	132	435	1	ENST00000301067.7:c.25G>A	p.Glu9Lys	p.E9K	ENST00000301067	NM_003482.3	9	Gag/Aag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95579443	95579443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	80	253	0	ENST00000343455.3:c.2026C>G	p.Arg676Gly	p.R676G	ENST00000343455	NM_177438.2	676	Cga/Gga																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99459264	99459264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	170	651	0	ENST00000268035.6:c.1900C>T	p.Pro634Ser	p.P634S	ENST00000268035	NM_000875.3	634	Ccc/Tcc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663410	67663410	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	72	254	0	ENST00000264010.4:c.1811C>G	p.Ser604Cys	p.S604C	ENST00000264010	NM_006565.3	604	tCt/tGt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67670670	67670670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	167	508	0	ENST00000264010.4:c.1915C>G	p.Gln639Glu	p.Q639E	ENST00000264010	NM_006565.3	639	Cag/Gag																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33446176	33446176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	116	477	0	ENST00000335858.7:c.98C>T	p.Ser33Phe	p.S33F	ENST00000335858	NM_133629.2	33	tCt/tTt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10260190	10260190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			889	218	672	0	ENST00000340748.4:c.2477C>T	p.Ser826Leu	p.S826L	ENST00000340748		826	tCa/tTa																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627430	14627430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			913	194	691	0	ENST00000254322.2:c.640G>C	p.Glu214Gln	p.E214Q	ENST00000254322	NM_006145.1	214	Gaa/Caa																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627571	14627571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			829	162	657	0	ENST00000254322.2:c.499G>A	p.Asp167Asn	p.D167N	ENST00000254322	NM_006145.1	167	Gac/Aac																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17387343	17387343	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			690	235	921	0	ENST00000359435.4:c.609G>C	p.Gln203His	p.Q203H	ENST00000359435	NM_001033549.1	203	caG/caC																																																																														
BBC3	27113	MSKCC	GRCh37	19	47735854	47735854	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			804	181	643	0	ENST00000449228.1:c.6del	p.Lys2AsnfsTer227	p.K2Nfs*227	ENST00000449228	NM_001127240.2	2	aaA/aa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190708696	190708696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	52	303	0	ENST00000441310.2:c.589A>G	p.Ile197Val	p.I197V	ENST00000441310	NM_000534.4	197	Att/Gtt																																																																														
BARD1	580	MSKCC	GRCh37	2	215645910	215645910	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	97	595	0	ENST00000260947.4:c.688G>C	p.Asp230His	p.D230H	ENST00000260947	NM_000465.2	230	Gac/Cac																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46275943	46275943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	132	497	0	ENST00000371998.3:c.3379C>T	p.His1127Tyr	p.H1127Y	ENST00000371998		1127	Cat/Tat																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121232	29121232	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	515	569	0	ENST00000328354.6:c.443G>C	p.Arg148Thr	p.R148T	ENST00000328354	NM_007194.3	148	aGg/aCg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098778	47098778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	165	693	0	ENST00000409792.3:c.6496G>A	p.Gly2166Ser	p.G2166S	ENST00000409792	NM_014159.6	2166	Ggt/Agt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52598231	52598231	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	84	372	0	ENST00000394830.3:c.3635C>A	p.Ser1212Ter	p.S1212*	ENST00000394830	NM_018313.4	1212	tCa/tAa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808367	1808367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	221	1141	0	ENST00000260795.2:c.2125G>C	p.Glu709Gln	p.E709Q	ENST00000260795		709	Gag/Cag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127357	55127357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	318	538	0	ENST00000257290.5:c.145T>C	p.Cys49Arg	p.C49R	ENST00000257290	NM_006206.4	49	Tgc/Cgc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323207	31323207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			109	584	732	1	ENST00000412585.2:c.782G>A	p.Gly261Glu	p.G261E	ENST00000412585	NM_005514.6	261	gGa/gAa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324140	31324385	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCGTACTGGTCATGCCCGCGGAGGAGGCGCCCGTCCGGCCCCACGTCGCAGCCGTACATGCTCTGGAGGGTGTGAGACCCTGGCCCCGGCCCCGCGGTCAGCCCAGTCCCCCGAGCCCCGCCCCGCCCCGACCAACCCGCGGGGATTTTGGCCTCAACTGAAAATGAAACCGGGTAAACGCGCCTGGGGCTCTCGCCGGTCGAGGGTCTGGGCGGGTCCCGCGGCCTCAGGGAGGCGGATCTCGG	GGCGTACTGGTCATGCCCGCGGAGGAGGCGCCCGTCCGGCCCCACGTCGCAGCCGTACATGCTCTGGAGGGTGTGAGACCCTGGCCCCGGCCCCGCGGTCAGCCCAGTCCCCCGAGCCCCGCCCCGCCCCGACCAACCCGCGGGGATTTTGGCCTCAACTGAAAATGAAACCGGGTAAACGCGCCTGGGGCTCTCGCCGGTCGAGGGTCTGGGCGGGTCCCGCGGCCTCAGGGAGGCGGATCTCGG	-			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			95	129	459	0	ENST00000412585.2:c.343+80_423del		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166809	32166809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	258	928	0	ENST00000375023.3:c.4429G>C	p.Glu1477Gln	p.E1477Q	ENST00000375023	NM_004557.3	1477	Gag/Cag																																																																														
HGF	3082	MSKCC	GRCh37	7	81332049	81332049	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			145	58	213	0	ENST00000222390.5:c.2035T>C	p.Cys679Arg	p.C679R	ENST00000222390	NM_000601.4	679	Tgt/Cgt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933749	39933749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	156	362	0	ENST00000378444.4:c.850G>A	p.Asp284Asn	p.D284N	ENST00000378444	NM_001123385.1	284	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	134	634	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40979368	40979368	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0048309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	66	347	0	ENST00000373198.4:c.1765C>G	p.Pro589Ala	p.P589A	ENST00000373198	NM_133170.3	589	Cca/Gca																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778004	27778004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	41	511	0	ENST00000369163.2:c.153G>T	p.Glu51Asp	p.E51D	ENST00000369163	NM_003536.2	51	gaG/gaT																																																																														
MSH3	4437	MSKCC	GRCh37	5	79950716	79950733	+	inframe_deletion	In_Frame_Del	DEL	CCGCAGCGGCCGCAGCGC	CCGCAGCGGCCGCAGCGC	-			P-0048309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	96	166	0	ENST00000265081.6:c.172_189del	p.Ala58_Pro63del	p.A58_P63del	ENST00000265081	NM_002439.4	57	gCCGCAGCGGCCGCAGCGCcc/gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	169	505	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741492	17741492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	130	408	0	ENST00000250003.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000250003	NM_002478.4	55	Gcg/Acg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105809	27105810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	117	329	0	ENST00000324856.7:c.5421dup	p.Lys1808Ter	p.K1808*	ENST00000324856	NM_006015.4	1807	agt/agTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089478	27089478	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	71	444	1	ENST00000324856.7:c.2434C>T	p.Gln812Ter	p.Q812*	ENST00000324856	NM_006015.4	812	Cag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133256557	133256563	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGGAC	TGGGGAC	-			P-0048353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	67	272	0	ENST00000320574.5:c.400_406del	p.Val134LysfsTer13	p.V134Kfs*13	ENST00000320574	NM_006231.2	134	GTCCCCAaa/aa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557630	21557630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	144	467	1	ENST00000382592.4:c.2215G>A	p.Asp739Asn	p.D739N	ENST00000382592	NM_014572.2	739	Gac/Aac																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046506	30046506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	57	368	0	ENST00000331968.5:c.2677G>A	p.Asp893Asn	p.D893N	ENST00000331968	NM_002742.2	893	Gac/Aac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517400	157517400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	161	373	0	ENST00000346085.5:c.3964G>C	p.Gly1322Arg	p.G1322R	ENST00000346085	NM_020732.3	1322	Ggc/Cgc																																																																														
ALK	238	MSKCC	GRCh37	2	29497983	29497983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	142	410	0	ENST00000389048.3:c.2023C>T	p.Pro675Ser	p.P675S	ENST00000389048	NM_004304.4	675	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578267	7578267	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	540	524	0	ENST00000269305.4:c.582delT	p.Ile195SerfsTer52	p.I195Sfs*52	ENST00000269305	NM_001126112.2	194	ctT/ct																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222720	5222720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	184	646	1	ENST00000357368.4:c.3083G>A	p.Arg1028Gln	p.R1028Q	ENST00000357368	NM_002850.3	1028	cGg/cAg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0048355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	45	191	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652147	36652148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	121	596	0	ENST00000244741.5:c.270dup	p.Gly91ArgfsTer38	p.G91Rfs*38	ENST00000244741	NM_000389.4	90	gga/ggAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	51	283	1				ENST00000310581	NM_198253.2																																																																																
SOS1	6654	MSKCC	GRCh37	2	39239481	39239481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	29	218	0	ENST00000402219.2:c.2176A>G	p.Met726Val	p.M726V	ENST00000402219	NM_005633.3	726	Atg/Gtg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950110	44950110	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	15	127	0	ENST00000377967.4:c.3878+1G>A		p.X1293_splice	ENST00000377967	NM_021140.2	1293																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	33	363	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	68	354	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	28	246	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100451	8100451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	66	837	0	ENST00000346208.3:c.425C>T	p.Ser142Leu	p.S142L	ENST00000346208		142	tCg/tTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508823	106508823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	97	563	2	ENST00000359195.3:c.817C>T	p.Arg273Cys	p.R273C	ENST00000359195	NM_002649.2	273	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140477861	140477861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	22	417	0	ENST00000288602.6:c.1447A>G	p.Lys483Glu	p.K483E	ENST00000288602	NM_004333.4	483	Aaa/Gaa																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748296	41748296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	86	751	0	ENST00000226382.2:c.473G>A	p.Arg158His	p.R158H	ENST00000226382	NM_003924.3	158	cGc/cAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81941371	81941371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	85	486	0	ENST00000359376.3:c.1549G>T	p.Val517Leu	p.V517L	ENST00000359376	NM_002661.3	517	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576716	7576923	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCA	GAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCA	-			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	50	366	1	ENST00000269305.4:c.923_993+137del		p.X308_splice	ENST00000269305	NM_001126112.2	308																																																																															
APC	324	MSKCC	GRCh37	5	112175525	112175526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAT			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	21	308	0	ENST00000257430.4:c.4236_4239dup	p.Val1414AsnfsTer10	p.V1414Nfs*10	ENST00000257430	NM_000038.5	1412	gga/gGAATga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932140	39932140	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	48	297	0	ENST00000378444.4:c.2459del	p.Asn820ThrfsTer36	p.N820Tfs*36	ENST00000378444	NM_001123385.1	820	aAc/ac																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	204	332	0	ENST00000349496.5:c.1161T>G	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	153	404	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	107	397	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	23	215	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972649	25972649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	42	322	1	ENST00000435504.4:c.1776G>T	p.Gln592His	p.Q592H	ENST00000435504		592	caG/caT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40979338	40979338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	194	434	0	ENST00000373198.4:c.1795C>A	p.Pro599Thr	p.P599T	ENST00000373198	NM_133170.3	599	Cca/Aca																																																																														
MET	4233	MSKCC	GRCh37	7	116380051	116380052	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0048373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	102	412	1	ENST00000397752.3:c.1440_1441delinsAA	p.Leu481Met	p.L481M	ENST00000397752	NM_000245.2	480	ctCCtg/ctAAtg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317440	1317440	+	downstream_gene_variant	3'Flank	SNP	A	A	T			P-0048373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	100	470	1				ENST00000381566																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578486	7578491	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAAC	ATCAAC	G			P-0048373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	487	701	0	ENST00000269305.4:c.439_444delinsC	p.Val147LeufsTer32	p.V147Lfs*32	ENST00000269305	NM_001126112.2	147	GTTGAT/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	116	426	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196059	67196059	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	87	541	0	ENST00000312629.5:c.43A>G	p.Ser15Gly	p.S15G	ENST00000312629	NM_003952.2	15	Agc/Ggc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15938117	15938117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	88	240	0	ENST00000268712.3:c.7097C>T	p.Thr2366Met	p.T2366M	ENST00000268712	NM_006311.3	2366	aCg/aTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437370	110437370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	16	168	0	ENST00000375856.3:c.1031C>T	p.Thr344Ile	p.T344I	ENST00000375856	NM_003749.2	344	aCc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	25	275	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	21	218	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	33	323	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	115	548	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174502	112174502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	28	205	0	ENST00000257430.4:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000257430	NM_000038.5	1071	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175642	112175642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	40	237	1	ENST00000257430.4:c.4351G>T	p.Glu1451Ter	p.E1451*	ENST00000257430	NM_000038.5	1451	Gaa/Taa																																																																														
NBN	4683	MSKCC	GRCh37	8	90982653	90982653	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	54	233	0	ENST00000265433.3:c.835C>T	p.Gln279Ter	p.Q279*	ENST00000265433	NM_002485.4	279	Cag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120130	70120130	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	74	175	0	ENST00000245479.2:c.1132C>T	p.Gln378Ter	p.Q378*	ENST00000245479	NM_000346.3	378	Cag/Tag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981212	201981212	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	277	567	0	ENST00000359651.3:c.292del	p.Asp98MetfsTer57	p.D98Mfs*57	ENST00000359651		97	atG/at																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132896	64132896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	111	580	0	ENST00000334205.4:c.1030C>T	p.Pro344Ser	p.P344S	ENST00000334205	NM_003942.2	344	Ccc/Tcc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23637674	23637674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	45	380	0	ENST00000261584.4:c.2631G>C	p.Trp877Cys	p.W877C	ENST00000261584	NM_024675.3	877	tgG/tgC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822452	72822456	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTA	CTTTA	-			P-0048375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	107	604	0	ENST00000268489.5:c.9719_9723del	p.Val3240GlyfsTer189	p.V3240Gfs*189	ENST00000268489	NM_006885.3	3240	gTAAAG/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0048378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	27	294	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	84	565	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	33	153	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805441	46805441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	84	579	0	ENST00000290295.7:c.515G>T	p.Trp172Leu	p.W172L	ENST00000290295	NM_006361.5	172	tGg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089622	27089623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	83	560	0	ENST00000324856.7:c.2579dup	p.His860GlnfsTer12	p.H860Qfs*12	ENST00000324856	NM_006015.4	860	cac/cAac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	103	359	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679216	88679216	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187007070		P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	38	500	1	ENST00000360948.2:c.821C>T	p.Thr274Met	p.T274M	ENST00000360948	NM_001012338.2	274	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	314	574	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120407	70120408	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	263	655	0	ENST00000245479.2:c.1413dup	p.Ala472ArgfsTer106	p.A472Rfs*106	ENST00000245479	NM_000346.3	470	aac/aaCc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672758	86672758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	62	260	0	ENST00000274376.6:c.2245C>T	p.Arg749Ter	p.R749*	ENST00000274376	NM_002890.2	749	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174349	112174349	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	50	208	0	ENST00000257430.4:c.3058G>T	p.Glu1020Ter	p.E1020*	ENST00000257430	NM_000038.5	1020	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	62	247	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																														
AR	367	MSKCC	GRCh37	X	66765746	66765746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	57	363	0	ENST00000374690.3:c.758C>T	p.Ala253Val	p.A253V	ENST00000374690	NM_000044.3	253	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	26	534	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	183	587	1	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903718	114903718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	139	451	0	ENST00000543371.1:c.722C>T	p.Pro241Leu	p.P241L	ENST00000543371	NM_001198531.1	241	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175223	112175224	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGAACTAGGTCAGCTGAAGATC			P-0048394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	42	208	0	ENST00000257430.4:c.3933_3955dup	p.Pro1319LeufsTer10	p.P1319Lfs*10	ENST00000257430	NM_000038.5	1311	att/atTGGAACTAGGTCAGCTGAAGATCt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816539	32816539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	169	625	0	ENST00000354258.4:c.1636C>T	p.Pro546Ser	p.P546S	ENST00000354258	NM_000593.5	546	Cct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	35	272	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778294	3778294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	281	603	0	ENST00000262367.5:c.6754C>A	p.Gln2252Lys	p.Q2252K	ENST00000262367	NM_004380.2	2252	Cag/Aag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221939	1221953	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCCTCAGGGATGC	TCTCCTCAGGGATGC	-			P-0048401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	163	546	0	ENST00000326873.7:c.863-8_869del		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	126	266	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0048403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	224	585	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828812	72828812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	209	405	0	ENST00000268489.5:c.7769C>G	p.Ser2590Cys	p.S2590C	ENST00000268489	NM_006885.3	2590	tCt/tGt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349447	73349447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	143	333	0	ENST00000377767.4:c.889C>T	p.Leu297Phe	p.L297F	ENST00000377767	NM_014953.3	297	Ctc/Ttc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022253	31022271	+	frameshift_variant	Frame_Shift_Del	DEL	AAACCACCCTGGGTGGTTA	AAACCACCCTGGGTGGTTA	-			P-0048403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	105	245	0	ENST00000375687.4:c.1740_1758del	p.Pro581ValfsTer116	p.P581Vfs*116	ENST00000375687	NM_015338.5	580	AAACCACCCTGGGTGGTTAaa/aa																																																																														
EP300	2033	MSKCC	GRCh37	22	41556659	41556659	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	315	323	0	ENST00000263253.7:c.3604G>T	p.Glu1202Ter	p.E1202*	ENST00000263253	NM_001429.3	1202	Gag/Tag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067252	37067252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	175	303	0	ENST00000231790.2:c.1163C>A	p.Ser388Tyr	p.S388Y	ENST00000231790	NM_000249.3	388	tCc/tAc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004221	150004221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	79	143	0	ENST00000253339.5:c.2004G>C	p.Met668Ile	p.M668I	ENST00000253339		668	atG/atC																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949083	44949083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	184	202	0	ENST00000377967.4:c.3644G>T	p.Gly1215Val	p.G1215V	ENST00000377967	NM_021140.2	1215	gGa/gTa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939141	36939141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	141	672	2	ENST00000361632.4:c.568C>T	p.Arg190Cys	p.R190C	ENST00000361632		190	Cgc/Tgc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949177	44949177	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0048405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	67	127	0	ENST00000377967.4:c.3736+2T>A		p.X1246_splice	ENST00000377967	NM_021140.2	1246																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	19	263	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0048406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	23	421	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949754	151949754	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	45	242	0	ENST00000262189.6:c.1346G>A	p.Trp449Ter	p.W449*	ENST00000262189	NM_170606.2	449	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	352	330	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
ATR	545	MSKCC	GRCh37	3	142186895	142186895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	33	131	0	ENST00000350721.4:c.6568C>T	p.Arg2190Cys	p.R2190C	ENST00000350721	NM_001184.3	2190	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692816	89692817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	37	120	0	ENST00000371953.3:c.301dup	p.Ile101AsnfsTer6	p.I101Nfs*6	ENST00000371953	NM_000314.4	100	-/A																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127911953	127911953	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	349	138	0	ENST00000373547.4:c.917G>C	p.Ter306SerextTer7	p.*306Sext*7	ENST00000373547	NM_002721.4	306	tGa/tCa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65321328	65321328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	349	251	0	ENST00000342505.4:c.1512G>T	p.Lys504Asn	p.K504N	ENST00000342505	NM_002227.2	504	aaG/aaT																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429286	78429286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	186	201	0	ENST00000370768.2:c.1156G>T	p.Gly386Trp	p.G386W	ENST00000370768	NM_003902.3	386	Ggg/Tgg																																																																														
MGA	23269	MSKCC	GRCh37	15	41989061	41989067	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAATT	GAAAATT	-			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	37	255	0	ENST00000219905.7:c.1857_1863del	p.Lys619AsnfsTer16	p.K619Nfs*16	ENST00000219905	NM_001164273.1	618	cGAAAATTg/cg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379775	17379775	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	552	357	0	ENST00000359435.4:c.160G>T	p.Glu54Ter	p.E54*	ENST00000359435	NM_001033549.1	54	Gag/Tag																																																																														
CCNE1	898	MSKCC	GRCh37	19	30314645	30314645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	3284	277	0	ENST00000262643.3:c.1194G>T	p.Gln398His	p.Q398H	ENST00000262643	NM_001238.2	398	caG/caT																																																																														
PAK7	0	MSKCC	GRCh37	20	9561520	9561520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	194	245	1	ENST00000353224.5:c.262G>T	p.Asp88Tyr	p.D88Y	ENST00000353224	NM_177990.2	88	Gat/Tat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730767	40730767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	262	250	0	ENST00000373198.4:c.3768G>T	p.Met1256Ile	p.M1256I	ENST00000373198	NM_133170.3	1256	atG/atT																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374814	149374818	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAC	GGGAC	-			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	289	197	0	ENST00000360632.3:c.276_280del	p.Ser93AlafsTer11	p.S93Afs*11	ENST00000360632	NM_015472.4	92	gcGTCCCtg/gctg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797714	32797714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	315	261	0	ENST00000374899.4:c.1788A>G	p.Ile596Met	p.I596M	ENST00000374899	NM_018833.2	596	atA/atG																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522604	106522604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	171	237	0	ENST00000359195.3:c.2581G>C	p.Asp861His	p.D861H	ENST00000359195	NM_002649.2	861	Gat/Cat																																																																														
TEK	7010	MSKCC	GRCh37	9	27220135	27220135	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	346	227	0	ENST00000380036.4:c.3192T>A	p.Asp1064Glu	p.D1064E	ENST00000380036	NM_000459.3	1064	gaT/gaA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396302	139396302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	984	354	0	ENST00000277541.6:c.5536C>T	p.Gln1846Ter	p.Q1846*	ENST00000277541	NM_017617.3	1846	Cag/Tag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412725	63412725	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	243	248	0	ENST00000330258.3:c.442G>C	p.Ala148Pro	p.A148P	ENST00000330258	NM_152424.3	148	Gct/Cct																																																																														
AR	367	MSKCC	GRCh37	X	66766141	66766141	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200067740		P-0048408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	313	242	0	ENST00000374690.3:c.1153G>T	p.Ala385Ser	p.A385S	ENST00000374690	NM_000044.3	385	Gct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	347	626	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	147	313	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575195	48575195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	112	218	0	ENST00000342988.3:c.389C>T	p.Pro130Leu	p.P130L	ENST00000342988	NM_005359.5	130	cCa/cTa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120675	115120675	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	198	685	0	ENST00000257566.3:c.331G>T	p.Glu111Ter	p.E111*	ENST00000257566	NM_016569.3	111	Gaa/Taa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266002	41266229	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTC	GTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTC	-			P-0048431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	31	162	0	ENST00000349496.5:c.14-15_226del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
TEK	7010	MSKCC	GRCh37	9	27180258	27180258	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	230	455	0	ENST00000380036.4:c.922G>C	p.Gly308Arg	p.G308R	ENST00000380036	NM_000459.3	308	Ggg/Cgg																																																																														
MPL	4352	MSKCC	GRCh37	1	43814535	43814535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	156	519	2	ENST00000372470.3:c.1330G>A	p.Ala444Thr	p.A444T	ENST00000372470	NM_005373.2	444	Gcc/Acc																																																																														
ERG	2078	MSKCC	GRCh37	21	39763605	39763605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	88	307	0	ENST00000288319.7:c.847del	p.Thr283LeufsTer8	p.T283Lfs*8	ENST00000288319	NM_182918.3	283	Act/ct																																																																														
VHL	7428	MSKCC	GRCh37	3	10188286	10188286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	145	538	0	ENST00000256474.2:c.429C>G	p.Asp143Glu	p.D143E	ENST00000256474	NM_000551.3	143	gaC/gaG																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	25	336	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0048434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	16	334	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	383	589	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0048435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	95	305	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0048435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	54	188	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43699721	43699721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	305	478	0	ENST00000382044.4:c.5794C>T	p.Pro1932Ser	p.P1932S	ENST00000382044	NM_001141980.1	1932	Cca/Tca																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554416	63554416	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	211	629	0	ENST00000307078.5:c.323T>C	p.Leu108Ser	p.L108S	ENST00000307078	NM_004655.3	108	tTa/tCa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561124	9561124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	221	355	0	ENST00000353224.5:c.658C>A	p.Gln220Lys	p.Q220K	ENST00000353224	NM_177990.2	220	Cag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944386	40944386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	153	445	0	ENST00000373198.4:c.2116C>A	p.Gln706Lys	p.Q706K	ENST00000373198	NM_133170.3	706	Cag/Aag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969122	93969122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	112	347	0	ENST00000369303.4:c.1874C>T	p.Ala625Val	p.A625V	ENST00000369303	NM_004440.3	625	gCc/gTc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285494	38285494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	213	627	1	ENST00000425967.3:c.659G>A	p.Arg220His	p.R220H	ENST00000425967	NM_001174067.1	220	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	488	792	0	ENST00000269305.4:c.281C>A	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230872	66230873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	50	269	0	ENST00000273854.3:c.2098dup	p.Arg700LysfsTer11	p.R700Kfs*11	ENST00000273854	NM_004439.5	700	aga/aAga																																																																														
PGR	5241	MSKCC	GRCh37	11	100933189	100933189	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	18	312	0	ENST00000325455.5:c.2201A>C	p.Lys734Thr	p.K734T	ENST00000325455	NM_001202474.3	734	aAa/aCa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041653	42041653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	142	486	0	ENST00000219905.7:c.5848C>G	p.Pro1950Ala	p.P1950A	ENST00000219905	NM_001164273.1	1950	Cca/Gca																																																																														
TET2	54790	MSKCC	GRCh37	4	106157250	106157250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	26	299	0	ENST00000380013.4:c.2151C>G	p.His717Gln	p.H717Q	ENST00000380013	NM_001127208.2	717	caC/caG																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469564	25469564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	423	832	2	ENST00000264709.3:c.1204C>T	p.Gln402Ter	p.Q402*	ENST00000264709	NM_175629.2	402	Cag/Tag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562982	21562982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	268	958	0	ENST00000382592.4:c.937G>A	p.Val313Met	p.V313M	ENST00000382592	NM_014572.2	313	Gtg/Atg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25536802	25536802	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	438	957	0	ENST00000264709.3:c.52G>T	p.Glu18Ter	p.E18*	ENST00000264709	NM_175629.2	18	Gag/Tag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090415	37090415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	28	421	1	ENST00000231790.2:c.2010G>T	p.Lys670Asn	p.K670N	ENST00000231790	NM_000249.3	670	aaG/aaT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361239	66361239	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	59	236	0	ENST00000273854.3:c.933A>T	p.Lys311Asn	p.K311N	ENST00000273854	NM_004439.5	311	aaA/aaT																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5549376	5549376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	162	571	0	ENST00000397747.3:c.403G>C	p.Glu135Gln	p.E135Q	ENST00000397747	NM_025239.3	135	Gaa/Caa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0048474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	234	713	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	148	732	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0048474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	63	282	0				ENST00000310581	NM_198253.2																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114905820	114905821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	115	540	0	ENST00000543371.1:c.843dup	p.Thr282HisfsTer46	p.T282Hfs*46	ENST00000543371	NM_001198531.1	280	tac/taCc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729864	41729864	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	74	496	0	ENST00000242208.4:c.665del	p.Pro222LeufsTer137	p.P222Lfs*137	ENST00000242208	NM_002192.2	222	cCt/ct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44913172	44913173	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0048474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	72	520	0	ENST00000377967.4:c.848_849del	p.Ser283TrpfsTer29	p.S283Wfs*29	ENST00000377967	NM_021140.2	283	TCt/t																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784865	9784865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	109	834	0	ENST00000377346.4:c.2868C>A	p.Phe956Leu	p.F956L	ENST00000377346	NM_005026.3	956	ttC/ttA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188525	11188525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	133	487	0	ENST00000361445.4:c.5896C>T	p.Arg1966Trp	p.R1966W	ENST00000361445	NM_004958.3	1966	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259486	16259486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	61	446	1	ENST00000375759.3:c.6751G>A	p.Ala2251Thr	p.A2251T	ENST00000375759	NM_015001.2	2251	Gca/Aca																																																																														
SDHB	6390	MSKCC	GRCh37	1	17371320	17371320	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	44	584	1	ENST00000375499.3:c.136C>T	p.Arg46Ter	p.R46*	ENST00000375499	NM_003000.2	46	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	381	923	2	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																														
SESN2	83667	MSKCC	GRCh37	1	28601520	28601520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	84	761	0	ENST00000253063.3:c.1205G>T	p.Gly402Val	p.G402V	ENST00000253063	NM_031459.4	402	gGc/gTc																																																																														
STK40	83931	MSKCC	GRCh37	1	36808981	36808981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	123	722	1	ENST00000373129.3:c.1073C>T	p.Ala358Val	p.A358V	ENST00000373129	NM_032017.1	358	gCg/gTg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932074	36932074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	180	746	0	ENST00000361632.4:c.2395A>G	p.Thr799Ala	p.T799A	ENST00000361632		799	Acc/Gcc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46509508	46509508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	75	462	0	ENST00000262741.5:c.1223G>A	p.Ser408Asn	p.S408N	ENST00000262741	NM_003629.3	408	aGc/aAc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521487	46521487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	249	479	1	ENST00000262741.5:c.921G>T	p.Lys307Asn	p.K307N	ENST00000262741	NM_003629.3	307	aaG/aaT																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46527637	46527637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	69	493	0	ENST00000262741.5:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000262741	NM_003629.3	243	cGa/cAa																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46527713	46527713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	27	318	0	ENST00000262741.5:c.652G>A	p.Ala218Thr	p.A218T	ENST00000262741	NM_003629.3	218	Gct/Act																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46715785	46715785	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	201	463	0	ENST00000371975.4:c.204T>G	p.Ser68Arg	p.S68R	ENST00000371975	NM_003579.3	68	agT/agG																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310563	65310563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	43	444	1	ENST00000342505.4:c.2125G>T	p.Asp709Tyr	p.D709Y	ENST00000342505	NM_002227.2	709	Gac/Tac																																																																														
JAK1	3716	MSKCC	GRCh37	1	65323452	65323452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	64	495	0	ENST00000342505.4:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000342505	NM_002227.2	449	Gcc/Acc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332599	65332599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	39	323	0	ENST00000342505.4:c.940G>A	p.Glu314Lys	p.E314K	ENST00000342505	NM_002227.2	314	Gaa/Aaa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332823	65332823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	27	283	0	ENST00000342505.4:c.716G>A	p.Arg239Gln	p.R239Q	ENST00000342505	NM_002227.2	239	cGg/cAg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	146	433	1	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78432754	78432754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	83	350	0	ENST00000370768.2:c.322C>T	p.Pro108Ser	p.P108S	ENST00000370768	NM_003902.3	108	Cca/Tca																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115263336	115263336	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	56	525	0	ENST00000438362.2:c.2014G>A	p.Asp672Asn	p.D672N	ENST00000438362	NM_001242891.1	672	Gat/Aat																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115280616	115280616	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	135	539	0	ENST00000438362.2:c.415G>T	p.Glu139Ter	p.E139*	ENST00000438362	NM_001242891.1	139	Gaa/Taa																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695784	117695784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147263365		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	64	473	0	ENST00000369458.3:c.653C>T	p.Thr218Met	p.T218M	ENST00000369458	NM_024626.3	218	aCg/aTg																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551841	150551841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	51	244	1	ENST00000369026.2:c.166G>T	p.Val56Leu	p.V56L	ENST00000369026	NM_021960.4	56	Gtg/Ttg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845433	156845433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	302	995	0	ENST00000524377.1:c.1476G>T	p.Glu492Asp	p.E492D	ENST00000524377	NM_002529.3	492	gaG/gaT																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849143	156849143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	125	922	4	ENST00000524377.1:c.2035G>A	p.Asp679Asn	p.D679N	ENST00000524377	NM_002529.3	679	Gac/Aac																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724542	162724542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	93	566	0	ENST00000367921.3:c.314G>A	p.Arg105His	p.R105H	ENST00000367921	NM_006182.2	105	cGc/cAc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163317623	163317623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	32	253	0	ENST00000271452.3:c.1019C>T	p.Ser340Leu	p.S340L	ENST00000271452	NM_145697.2	340	tCg/tTg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193218892	193218892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	34	236	0	ENST00000367435.3:c.1450C>T	p.Arg484Cys	p.R484C	ENST00000367435	NM_024529.4	484	Cgt/Tgt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206650027	206650027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201666998		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	63	545	0	ENST00000367120.3:c.547G>A	p.Asp183Asn	p.D183N	ENST00000367120	NM_014002.3	183	Gac/Aac																																																																														
IL10	3586	MSKCC	GRCh37	1	206945625	206945625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	64	425	0	ENST00000423557.1:c.156G>T	p.Lys52Asn	p.K52N	ENST00000423557	NM_000572.2	52	aaG/aaT																																																																														
IL10	3586	MSKCC	GRCh37	1	206945665	206945665	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	53	599	0	ENST00000423557.1:c.116A>C	p.Asn39Thr	p.N39T	ENST00000423557	NM_000572.2	39	aAc/aCc																																																																														
PARP1	142	MSKCC	GRCh37	1	226567664	226567664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	96	697	1	ENST00000366794.5:c.1502C>T	p.Ala501Val	p.A501V	ENST00000366794	NM_001618.3	501	gCt/gTt																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612810	228612810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	126	801	1	ENST00000366696.1:c.217C>T	p.Arg73Cys	p.R73C	ENST00000366696	NM_003493.2	73	Cgc/Tgc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243675668	243675668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	26	249	0	ENST00000263826.5:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000263826	NM_005465.4	438	Gaa/Aaa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716229	243716229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	56	471	0	ENST00000263826.5:c.965A>G	p.Asp322Gly	p.D322G	ENST00000263826	NM_005465.4	322	gAc/gGc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243800950	243800950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	48	357	0	ENST00000263826.5:c.524C>A	p.Ala175Asp	p.A175D	ENST00000263826	NM_005465.4	175	gCt/gAt																																																																														
RET	5979	MSKCC	GRCh37	10	43598038	43598038	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	95	905	0	ENST00000355710.3:c.586T>G	p.Leu196Val	p.L196V	ENST00000355710	NM_020975.4	196	Ttg/Gtg																																																																														
RET	5979	MSKCC	GRCh37	10	43601986	43601986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	145	1063	1	ENST00000355710.3:c.1030G>A	p.Gly344Ser	p.G344S	ENST00000355710	NM_020975.4	344	Ggc/Agc																																																																														
RET	5979	MSKCC	GRCh37	10	43606892	43606892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	279	1126	0	ENST00000355710.3:c.1501C>A	p.Leu501Ile	p.L501I	ENST00000355710	NM_020975.4	501	Ctt/Att																																																																														
RET	5979	MSKCC	GRCh37	10	43609994	43609994	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148935214		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	100	1025	1	ENST00000355710.3:c.1946C>T	p.Ser649Leu	p.S649L	ENST00000355710	NM_020975.4	649	tCg/tTg																																																																														
RET	5979	MSKCC	GRCh37	10	43622039	43622039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	152	419	0	ENST00000355710.3:c.3056C>T	p.Ala1019Val	p.A1019V	ENST00000355710	NM_020975.4	1019	gCg/gTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70333547	70333547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	45	530	0	ENST00000373644.4:c.1452G>T	p.Glu484Asp	p.E484D	ENST00000373644	NM_030625.2	484	gaG/gaT																																																																														
TET1	80312	MSKCC	GRCh37	10	70446279	70446279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	80	511	1	ENST00000373644.4:c.5219G>A	p.Arg1740His	p.R1740H	ENST00000373644	NM_030625.2	1740	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685294	89685294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	62	175	0	ENST00000371953.3:c.189C>A	p.Asn63Lys	p.N63K	ENST00000371953	NM_000314.4	63	aaC/aaA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	116	469	1	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692918	89692918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	122	495	0	ENST00000371953.3:c.402G>T	p.Met134Ile	p.M134I	ENST00000371953	NM_000314.4	134	atG/atT																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724144	112724144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	22	304	0	ENST00000369452.4:c.28G>T	p.Asp10Tyr	p.D10Y	ENST00000369452	NM_007373.3	10	Gac/Tac																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123298139	123298139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	58	455	0	ENST00000358487.5:c.715T>C	p.Ser239Pro	p.S239P	ENST00000358487	NM_000141.4	239	Tcc/Ccc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14300921	14300921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	42	327	0	ENST00000256196.4:c.577G>A	p.Glu193Lys	p.E193K	ENST00000256196		193	Gaa/Aaa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741858	17741858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	32	222	0	ENST00000250003.3:c.529G>A	p.Ala177Thr	p.A177T	ENST00000250003	NM_002478.4	177	Gcc/Acc																																																																														
WT1	7490	MSKCC	GRCh37	11	32413577	32413577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	46	462	0	ENST00000332351.3:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000332351	NM_024426.4	458	cGa/cAa																																																																														
WT1	7490	MSKCC	GRCh37	11	32449584	32449584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	119	1033	2	ENST00000332351.3:c.790C>T	p.Pro264Ser	p.P264S	ENST00000332351	NM_024426.4	264	Ccg/Tcg																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205491	61205491	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	53	390	0	ENST00000301761.2:c.276A>C	p.Glu92Asp	p.E92D	ENST00000301761	NM_017841.2	92	gaA/gaC																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588238	69588238	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	129	573	0	ENST00000168712.1:c.460G>T	p.Glu154Ter	p.E154*	ENST00000168712	NM_002007.2	154	Gag/Tag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945335	71945335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	199	844	0	ENST00000298229.2:c.2223G>T	p.Lys741Asn	p.K741N	ENST00000298229	NM_001567.3	741	aaG/aaT																																																																														
PAK1	5058	MSKCC	GRCh37	11	77103478	77103478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	44	349	0	ENST00000356341.3:c.88G>A	p.Asp30Asn	p.D30N	ENST00000356341	NM_002576.4	30	Gat/Aat																																																																														
MRE11A	0	MSKCC	GRCh37	11	94153304	94153304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	36	406	0	ENST00000323929.3:c.2114G>T	p.Arg705Ile	p.R705I	ENST00000323929	NM_005591.3	705	aGa/aTa																																																																														
PGR	5241	MSKCC	GRCh37	11	100922190	100922190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	68	362	0	ENST00000325455.5:c.2322G>T	p.Gln774His	p.Q774H	ENST00000325455	NM_001202474.3	774	caG/caT																																																																														
YAP1	10413	MSKCC	GRCh37	11	102076740	102076740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	84	675	3	ENST00000282441.5:c.919C>T	p.Arg307Ter	p.R307*	ENST00000282441	NM_001130145.2	307	Cga/Tga																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195335	102195335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	55	344	1	ENST00000263464.3:c.95G>A	p.Arg32Gln	p.R32Q	ENST00000263464	NM_001165.4	32	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108106457	108106457	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	23	198	0	ENST00000278616.4:c.392C>A	p.Ser131Ter	p.S131*	ENST00000278616	NM_000051.3	131	tCa/tAa																																																																														
ATM	472	MSKCC	GRCh37	11	108106513	108106513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	96	244	0	ENST00000278616.4:c.448C>A	p.Leu150Ile	p.L150I	ENST00000278616	NM_000051.3	150	Ctt/Att																																																																														
ATM	472	MSKCC	GRCh37	11	108115594	108115594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	129	365	0	ENST00000278616.4:c.742C>T	p.Arg248Ter	p.R248*	ENST00000278616	NM_000051.3	248	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	168	372	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108139268	108139268	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55723361		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	71	690	0	ENST00000278616.4:c.2770C>T	p.Arg924Trp	p.R924W	ENST00000278616	NM_000051.3	924	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108214049	108214049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	104	280	0	ENST00000278616.4:c.8369G>A	p.Arg2790Lys	p.R2790K	ENST00000278616	NM_000051.3	2790	aGa/aAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343913	118343913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	36	383	0	ENST00000534358.1:c.2039C>T	p.Ser680Leu	p.S680L	ENST00000534358	NM_005933.3	680	tCg/tTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344036	118344036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	45	387	0	ENST00000534358.1:c.2162G>A	p.Arg721Gln	p.R721Q	ENST00000534358	NM_005933.3	721	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373202	118373202	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	58	460	0	ENST00000534358.1:c.6595A>G	p.Ser2199Gly	p.S2199G	ENST00000534358	NM_005933.3	2199	Agt/Ggt																																																																														
CBL	867	MSKCC	GRCh37	11	119142447	119142447	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs199739868		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	95	331	0	ENST00000264033.4:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000264033	NM_005188.3	149	cGa/cAa																																																																														
CBL	867	MSKCC	GRCh37	11	119158653	119158653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	49	436	0	ENST00000264033.4:c.2033C>T	p.Ala678Val	p.A678V	ENST00000264033	NM_005188.3	678	gCc/gTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419064	419064	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	116	406	0	ENST00000399788.2:c.3283G>T	p.Glu1095Ter	p.E1095*	ENST00000399788	NM_001042603.1	1095	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	422253	422253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	71	590	0	ENST00000399788.2:c.3005G>A	p.Arg1002Gln	p.R1002Q	ENST00000399788	NM_001042603.1	1002	cGa/cAa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	475141	475141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	49	533	0	ENST00000399788.2:c.496C>A	p.Leu166Ile	p.L166I	ENST00000399788	NM_001042603.1	166	Ctc/Atc																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992143	11992143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	62	436	0	ENST00000396373.4:c.233C>T	p.Ser78Phe	p.S78F	ENST00000396373	NM_001987.4	78	tCt/tTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18443830	18443830	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	40	328	0	ENST00000266497.5:c.803C>A	p.Ser268Tyr	p.S268Y	ENST00000266497		268	tCt/tAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691128	18691128	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	100	379	0	ENST00000266497.5:c.3239A>C	p.Tyr1080Ser	p.Y1080S	ENST00000266497		1080	tAc/tCc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793379	18793379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	38	391	0	ENST00000266497.5:c.4076C>T	p.Ser1359Phe	p.S1359F	ENST00000266497		1359	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	134	467	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	68	413	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944829	31944829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1270	125	1084	1	ENST00000340398.3:c.272C>T	p.Ala91Val	p.A91V	ENST00000340398	NM_001013699.2	91	gCg/gTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244476	46244476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	66	427	0	ENST00000334344.6:c.2570C>A	p.Ser857Tyr	p.S857Y	ENST00000334344	NM_152641.2	857	tCt/tAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426313	49426313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	131	1189	1	ENST00000301067.7:c.12175G>A	p.Ala4059Thr	p.A4059T	ENST00000301067	NM_003482.3	4059	Gcc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427701	49427701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	127	801	0	ENST00000301067.7:c.10787G>A	p.Arg3596Gln	p.R3596Q	ENST00000301067	NM_003482.3	3596	cGg/cAg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861838	57861838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	176	694	0	ENST00000228682.2:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000228682	NM_005269.2	380	cGa/cAa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57862003	57862003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	61	485	0	ENST00000228682.2:c.1304C>T	p.Ala435Val	p.A435V	ENST00000228682	NM_005269.2	435	gCc/gTc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145099	58145099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3211612		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	179	686	0	ENST00000257904.6:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000257904	NM_000075.3	82	cGa/cAa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69229721	69229721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	32	309	0	ENST00000462284.1:c.797G>A	p.Ser266Asn	p.S266N	ENST00000462284	NM_002392.5	266	aGc/aAc																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233187	69233187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	23	246	0	ENST00000462284.1:c.1052C>T	p.Ala351Val	p.A351V	ENST00000462284	NM_002392.5	351	gCc/gTc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856617	111856617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	74	230	1	ENST00000341259.2:c.668C>T	p.Ala223Val	p.A223V	ENST00000341259	NM_005475.2	223	gCg/gTg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112893859	112893859	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	33	388	0	ENST00000351677.2:c.748G>T	p.Glu250Ter	p.E250*	ENST00000351677	NM_002834.3	250	Gaa/Taa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926960	112926960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	55	572	4	ENST00000351677.2:c.1580G>A	p.Arg527His	p.R527H	ENST00000351677	NM_002834.3	527	cGc/cAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114226	115114226	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	186	783	0	ENST00000257566.3:c.991A>G	p.Lys331Glu	p.K331E	ENST00000257566	NM_016569.3	331	Aag/Gag																																																																														
POLE	5426	MSKCC	GRCh37	12	133250214	133250214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	358	793	0	ENST00000320574.5:c.1306C>T	p.Pro436Ser	p.P436S	ENST00000320574	NM_006231.2	436	Ccc/Tcc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21619895	21619895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	91	586	0	ENST00000382592.4:c.271T>C	p.Ser91Pro	p.S91P	ENST00000382592	NM_014572.2	91	Tcg/Ccg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28885761	28885761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	57	387	0	ENST00000282397.4:c.3601C>T	p.Pro1201Ser	p.P1201S	ENST00000282397	NM_002019.4	1201	Ccg/Tcg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28959145	28959145	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	58	337	0	ENST00000282397.4:c.1993C>T	p.Arg665Ter	p.R665*	ENST00000282397	NM_002019.4	665	Cga/Tga																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001399	29001399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	113	365	0	ENST00000282397.4:c.1333C>A	p.Pro445Thr	p.P445T	ENST00000282397	NM_002019.4	445	Cca/Aca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32899248	32899248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	63	271	0	ENST00000380152.3:c.352C>T	p.Arg118Cys	p.R118C	ENST00000380152		118	Cgc/Tgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937655	32937655	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	47	423	0	ENST00000380152.3:c.8316A>C	p.Glu2772Asp	p.E2772D	ENST00000380152		2772	gaA/gaC																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972663	32972663	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	88	406	0	ENST00000380152.3:c.10013C>A	p.Ser3338Ter	p.S3338*	ENST00000380152		3338	tCa/tAa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134988	41134988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	55	232	0	ENST00000379561.5:c.640C>T	p.Arg214Cys	p.R214C	ENST00000379561	NM_002015.3	214	Cgt/Tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	48942686	48942686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	32	210	0	ENST00000267163.4:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000267163	NM_000321.2	358	cGa/cAa																																																																														
RB1	5925	MSKCC	GRCh37	13	49033965	49033965	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	45	400	0	ENST00000267163.4:c.2102A>G	p.Asp701Gly	p.D701G	ENST00000267163	NM_000321.2	701	gAc/gGc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73345122	73345122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	32	318	0	ENST00000377767.4:c.1675G>A	p.Ala559Thr	p.A559T	ENST00000377767	NM_014953.3	559	Gca/Aca																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046488	30046488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	154	610	0	ENST00000331968.5:c.2695G>A	p.Glu899Lys	p.E899K	ENST00000331968	NM_002742.2	899	Gaa/Aaa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30133041	30133041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	38	457	0	ENST00000331968.5:c.560G>T	p.Arg187Ile	p.R187I	ENST00000331968	NM_002742.2	187	aGa/aTa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30194858	30194858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	58	486	0	ENST00000331968.5:c.287G>A	p.Gly96Glu	p.G96E	ENST00000331968	NM_002742.2	96	gGa/gAa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061103	38061103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	35	227	0	ENST00000250448.2:c.886G>A	p.Asp296Asn	p.D296N	ENST00000250448	NM_004496.3	296	Gac/Aac																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68353772	68353772	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	89	283	0	ENST00000487270.1:c.607G>T	p.Gly203Ter	p.G203*	ENST00000487270	NM_133509.3	203	Gga/Tga																																																																														
RAD51B	5890	MSKCC	GRCh37	14	69061312	69061312	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	14	163	0	ENST00000487270.1:c.1147A>T	p.Ile383Phe	p.I383F	ENST00000487270	NM_133509.3	383	Att/Ttt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562470	95562470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	64	433	0	ENST00000343455.3:c.4787G>T	p.Arg1596Met	p.R1596M	ENST00000343455	NM_177438.2	1596	aGg/aTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570090	95570090	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	98	428	0	ENST00000343455.3:c.3643A>G	p.Thr1215Ala	p.T1215A	ENST00000343455	NM_177438.2	1215	Acc/Gcc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572534	95572534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	49	242	0	ENST00000343455.3:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000343455	NM_177438.2	944	cGa/cAa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614469	38614469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	71	333	0	ENST00000299084.4:c.235G>T	p.Asp79Tyr	p.D79Y	ENST00000299084	NM_152594.2	79	Gac/Tac																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643300	38643300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	111	379	0	ENST00000299084.4:c.770G>A	p.Arg257His	p.R257H	ENST00000299084	NM_152594.2	257	cGc/cAc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643315	38643315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	56	383	0	ENST00000299084.4:c.785G>T	p.Arg262Ile	p.R262I	ENST00000299084	NM_152594.2	262	aGa/aTa																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40683721	40683721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	175	737	0	ENST00000249776.8:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000249776	NM_033286.3	238	cGa/cAa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961791	41961791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	49	412	0	ENST00000219905.7:c.699C>A	p.Phe233Leu	p.F233L	ENST00000219905	NM_001164273.1	233	ttC/ttA																																																																														
MGA	23269	MSKCC	GRCh37	15	42035031	42035031	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	78	644	0	ENST00000219905.7:c.4873G>T	p.Glu1625Ter	p.E1625*	ENST00000219905	NM_001164273.1	1625	Gaa/Taa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713250	43713250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	139	959	1	ENST00000382044.4:c.4223G>A	p.Arg1408His	p.R1408H	ENST00000382044	NM_001141980.1	1408	cGc/cAc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43730552	43730552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200776719		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	148	534	0	ENST00000382044.4:c.3161G>A	p.Arg1054Gln	p.R1054Q	ENST00000382044	NM_001141980.1	1054	cGa/cAa																																																																														
CD276	80381	MSKCC	GRCh37	15	74000779	74000779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	83	630	0	ENST00000318443.5:c.1469G>T	p.Arg490Ile	p.R490I	ENST00000318443	NM_001024736.1	490	aGa/aTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88428950	88428950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	35	205	0	ENST00000360948.2:c.2150G>A	p.Gly717Glu	p.G717E	ENST00000360948	NM_001012338.2	717	gGa/gAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670407	88670407	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	44	364	0	ENST00000360948.2:c.1279G>T	p.Glu427Ter	p.E427*	ENST00000360948	NM_001012338.2	427	Gaa/Taa																																																																														
BLM	641	MSKCC	GRCh37	15	91304045	91304045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	80	535	0	ENST00000355112.3:c.1442C>T	p.Ala481Val	p.A481V	ENST00000355112	NM_000057.2	481	gCc/gTc																																																																														
BLM	641	MSKCC	GRCh37	15	91306337	91306337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	55	349	0	ENST00000355112.3:c.2024C>T	p.Ala675Val	p.A675V	ENST00000355112	NM_000057.2	675	gCg/gTg																																																																														
BLM	641	MSKCC	GRCh37	15	91312758	91312758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	76	496	0	ENST00000355112.3:c.2497G>A	p.Ala833Thr	p.A833T	ENST00000355112	NM_000057.2	833	Gct/Act																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456496	99456496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	59	378	0	ENST00000268035.6:c.1813C>T	p.Arg605Cys	p.R605C	ENST00000268035	NM_000875.3	605	Cgc/Tgc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465547	99465547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	77	599	0	ENST00000268035.6:c.2372C>T	p.Ser791Phe	p.S791F	ENST00000268035	NM_000875.3	791	tCt/tTt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133780	2133780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	74	954	1	ENST00000219476.3:c.3968C>T	p.Ala1323Val	p.A1323V	ENST00000219476	NM_000548.3	1323	gCg/gTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658653	3658653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	278	1050	0	ENST00000294008.3:c.313G>A	p.Gly105Ser	p.G105S	ENST00000294008	NM_032444.2	105	Ggc/Agc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777838	3777838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1347	192	1222	0	ENST00000262367.5:c.7210G>A	p.Glu2404Lys	p.E2404K	ENST00000262367	NM_004380.2	2404	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820978	3820978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	135	546	1	ENST00000262367.5:c.2473C>T	p.Pro825Ser	p.P825S	ENST00000262367	NM_004380.2	825	Cct/Tct																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830776	3830776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	164	553	0	ENST00000262367.5:c.1780G>A	p.Glu594Lys	p.E594K	ENST00000262367	NM_004380.2	594	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857127	9857127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	90	378	0	ENST00000330684.3:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000330684	NM_001134407.1	1425	tCg/tTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857587	9857587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	49	518	1	ENST00000330684.3:c.3814G>A	p.Ala1272Thr	p.A1272T	ENST00000330684	NM_001134407.1	1272	Gca/Aca																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858746	9858746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	68	310	0	ENST00000330684.3:c.2655C>A	p.Phe885Leu	p.F885L	ENST00000330684	NM_001134407.1	885	ttC/ttA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923392	9923392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	110	625	0	ENST00000330684.3:c.1895C>T	p.Ser632Phe	p.S632F	ENST00000330684	NM_001134407.1	632	tCt/tTt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23625412	23625412	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	59	425	0	ENST00000261584.4:c.3114G>T	p.Trp1038Cys	p.W1038C	ENST00000261584	NM_024675.3	1038	tgG/tgT																																																																														
CBFB	865	MSKCC	GRCh37	16	67063643	67063643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	107	577	0	ENST00000412916.2:c.92G>A	p.Gly31Asp	p.G31D	ENST00000412916		31	gGc/gAc																																																																														
CDH1	999	MSKCC	GRCh37	16	68842692	68842692	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	268	616	0	ENST00000261769.5:c.628G>T	p.Glu210Ter	p.E210*	ENST00000261769	NM_004360.3	210	Gaa/Taa																																																																														
CDH1	999	MSKCC	GRCh37	16	68867356	68867356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	82	523	0	ENST00000261769.5:c.2603G>A	p.Arg868His	p.R868H	ENST00000261769	NM_004360.3	868	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821365	72821365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	81	395	1	ENST00000268489.5:c.10810G>A	p.Ala3604Thr	p.A3604T	ENST00000268489	NM_006885.3	3604	Gcc/Acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828024	72828024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200701402		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	128	1006	2	ENST00000268489.5:c.8557G>A	p.Ala2853Thr	p.A2853T	ENST00000268489	NM_006885.3	2853	Gca/Aca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831047	72831047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	64	493	0	ENST00000268489.5:c.5534G>A	p.Ser1845Asn	p.S1845N	ENST00000268489	NM_006885.3	1845	aGc/aAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845838	72845838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	87	692	1	ENST00000268489.5:c.3629G>A	p.Arg1210Gln	p.R1210Q	ENST00000268489	NM_006885.3	1210	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993007	72993008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	120	1027	0	ENST00000268489.5:c.1037dup	p.Asn346LysfsTer11	p.N346Kfs*11	ENST00000268489	NM_006885.3	346	aac/aaAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81990312	81990312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	53	451	0	ENST00000359376.3:c.3583G>A	p.Glu1195Lys	p.E1195K	ENST00000359376	NM_002661.3	1195	Gaa/Aaa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350710	89350710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138898373		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	141	857	0	ENST00000301030.4:c.2240C>T	p.Ser747Leu	p.S747L	ENST00000301030	NM_001256183.1	747	tCg/tTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350972	89350972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	139	884	0	ENST00000301030.4:c.1978G>A	p.Glu660Lys	p.E660K	ENST00000301030	NM_001256183.1	660	Gaa/Aaa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89354953	89354953	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	208	848	2	ENST00000301030.4:c.727A>G	p.Asn243Asp	p.N243D	ENST00000301030	NM_001256183.1	243	Aac/Gac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89851353	89851353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	147	679	0	ENST00000389301.3:c.1379G>A	p.Arg460Gln	p.R460Q	ENST00000389301	NM_000135.2	460	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	115	801	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7978973	7978973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	88	596	1	ENST00000319144.4:c.1594G>A	p.Glu532Lys	p.E532K	ENST00000319144	NM_001139.2	532	Gaa/Aaa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7989466	7989466	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	268	903	0	ENST00000319144.4:c.220T>C	p.Tyr74His	p.Y74H	ENST00000319144	NM_001139.2	74	Tac/Cac																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15989690	15989690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	70	446	0	ENST00000268712.3:c.3083G>A	p.Arg1028Gln	p.R1028Q	ENST00000268712	NM_006311.3	1028	cGa/cAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16022764	16022764	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	90	351	0	ENST00000268712.3:c.1888G>T	p.Glu630Ter	p.E630*	ENST00000268712	NM_006311.3	630	Gaa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16089907	16089907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	66	332	0	ENST00000268712.3:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000268712	NM_006311.3	68	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29490382	29490382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	53	445	1	ENST00000358273.4:c.467G>A	p.Arg156His	p.R156H	ENST00000358273	NM_001042492.2	156	cGc/cAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29533379	29533379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	26	182	0	ENST00000358273.4:c.1382G>A	p.Arg461Gln	p.R461Q	ENST00000358273	NM_001042492.2	461	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29664390	29664390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	39	385	0	ENST00000358273.4:c.6432G>T	p.Glu2144Asp	p.E2144D	ENST00000358273	NM_001042492.2	2144	gaG/gaT																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	25	323	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29679390	29679390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	73	371	0	ENST00000358273.4:c.7573G>A	p.Asp2525Asn	p.D2525N	ENST00000358273	NM_001042492.2	2525	Gac/Aac																																																																														
NF1	4763	MSKCC	GRCh37	17	29683534	29683534	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	25	284	0	ENST00000358273.4:c.7672G>T	p.Glu2558Ter	p.E2558*	ENST00000358273	NM_001042492.2	2558	Gaa/Taa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30264538	30264538	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	73	231	0	ENST00000322652.5:c.273G>T	p.Glu91Asp	p.E91D	ENST00000322652	NM_015355.2	91	gaG/gaT																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627382	37627382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	148	648	1	ENST00000447079.4:c.1297A>G	p.Ser433Gly	p.S433G	ENST00000447079	NM_015083.1	433	Agt/Ggt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37667783	37667783	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	86	381	0	ENST00000447079.4:c.2668C>T	p.Arg890Cys	p.R890C	ENST00000447079	NM_015083.1	890	Cgc/Tgc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682537	37682537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	46	364	0	ENST00000447079.4:c.3728G>T	p.Arg1243Ile	p.R1243I	ENST00000447079	NM_015083.1	1243	aGa/aTa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881359	37881359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	194	901	0	ENST00000269571.5:c.2551G>A	p.Val851Met	p.V851M	ENST00000269571		851	Gtg/Atg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40474456	40474456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	62	512	0	ENST00000264657.5:c.1945T>C	p.Ser649Pro	p.S649P	ENST00000264657	NM_139276.2	649	Tca/Cca																																																																														
EZH1	2145	MSKCC	GRCh37	17	40854561	40854561	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138757221		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	110	863	4	ENST00000428826.2:c.2233G>A	p.Asp745Asn	p.D745N	ENST00000428826		745	Gac/Aac																																																																														
EZH1	2145	MSKCC	GRCh37	17	40874827	40874827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	62	497	0	ENST00000428826.2:c.473T>C	p.Val158Ala	p.V158A	ENST00000428826		158	gTc/gCc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245143	41245143	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	209	752	0	ENST00000357654.3:c.2405T>C	p.Val802Ala	p.V802A	ENST00000357654	NM_007294.3	802	gTg/gCg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245759	41245759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	77	553	0	ENST00000357654.3:c.1789G>A	p.Glu597Lys	p.E597K	ENST00000357654	NM_007294.3	597	Gaa/Aaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246152	41246152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	144	578	0	ENST00000357654.3:c.1396C>T	p.Arg466Trp	p.R466W	ENST00000357654	NM_007294.3	466	Cgg/Tgg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246282	41246282	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	60	523	0	ENST00000357654.3:c.1266T>G	p.Tyr422Ter	p.Y422*	ENST00000357654	NM_007294.3	422	taT/taG																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805457	46805457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	144	1012	0	ENST00000290295.7:c.499G>A	p.Asp167Asn	p.D167N	ENST00000290295	NM_006361.5	167	Gac/Aac																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58701067	58701067	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	73	564	0	ENST00000305921.3:c.658G>T	p.Glu220Ter	p.E220*	ENST00000305921	NM_003620.3	220	Gaa/Taa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	205	530	0	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740750	58740750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	148	571	0	ENST00000305921.3:c.1655G>A	p.Arg552Gln	p.R552Q	ENST00000305921	NM_003620.3	552	cGa/cAa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59770824	59770824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45572934		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	34	344	0	ENST00000259008.2:c.2542C>T	p.Arg848Cys	p.R848C	ENST00000259008	NM_032043.2	848	Cgc/Tgc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59926512	59926512	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61757643		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	98	523	1	ENST00000259008.2:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000259008	NM_032043.2	162	cGa/cAa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59926602	59926602	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	97	384	0	ENST00000259008.2:c.395C>A	p.Thr132Asn	p.T132N	ENST00000259008	NM_032043.2	132	aCc/aAc																																																																														
CD79B	974	MSKCC	GRCh37	17	62007580	62007580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	127	968	0	ENST00000392795.3:c.287G>A	p.Arg96His	p.R96H	ENST00000392795	NM_001039933.1	96	cGc/cAc																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66511562	66511562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	49	326	0	ENST00000358598.2:c.22G>A	p.Ala8Thr	p.A8T	ENST00000358598	NM_212471.2	8	Gcc/Acc																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66522028	66522028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	38	255	0	ENST00000358598.2:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000358598	NM_212471.2	228	cGa/cAa																																																																														
YES1	7525	MSKCC	GRCh37	18	751726	751726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	36	359	0	ENST00000314574.4:c.350G>T	p.Arg117Ile	p.R117I	ENST00000314574	NM_005433.3	117	aGa/aTa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45375001	45375001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	96	417	0	ENST00000262160.6:c.842A>G	p.Glu281Gly	p.E281G	ENST00000262160	NM_005901.5	281	gAa/gGa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56378177	56378177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	31	365	0	ENST00000348428.3:c.950G>A	p.Cys317Tyr	p.C317Y	ENST00000348428	NM_006785.3	317	tGc/tAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208313	5208313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	238	920	0	ENST00000357368.4:c.5577C>A	p.Phe1859Leu	p.F1859L	ENST00000357368	NM_002850.3	1859	ttC/ttA																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210755	5210755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	275	1000	0	ENST00000357368.4:c.5296C>T	p.Arg1766Cys	p.R1766C	ENST00000357368	NM_002850.3	1766	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220323	5220323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	176	763	0	ENST00000357368.4:c.3497G>A	p.Gly1166Glu	p.G1166E	ENST00000357368	NM_002850.3	1166	gGa/gAa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244176	5244176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	100	900	0	ENST00000357368.4:c.1306C>T	p.Arg436Trp	p.R436W	ENST00000357368	NM_002850.3	436	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244274	5244274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	114	1078	1	ENST00000357368.4:c.1208C>T	p.Ser403Leu	p.S403L	ENST00000357368	NM_002850.3	403	tCg/tTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244392	5244392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	130	956	2	ENST00000357368.4:c.1090G>A	p.Val364Ile	p.V364I	ENST00000357368	NM_002850.3	364	Gtc/Atc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5265204	5265204	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	111	899	1	ENST00000357368.4:c.383A>G	p.Asp128Gly	p.D128G	ENST00000357368	NM_002850.3	128	gAc/gGc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10251851	10251851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	164	633	0	ENST00000340748.4:c.3276G>T	p.Lys1092Asn	p.K1092N	ENST00000340748		1092	aaG/aaT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10267124	10267124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	39	553	1	ENST00000340748.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000340748		432	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271691	15271691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1171	309	1222	1	ENST00000263388.2:c.6748G>A	p.Glu2250Lys	p.E2250K	ENST00000263388	NM_000435.2	2250	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276621	15276621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	246	834	2	ENST00000263388.2:c.5644G>A	p.Ala1882Thr	p.A1882T	ENST00000263388	NM_000435.2	1882	Gcc/Acc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15278086	15278086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	114	829	0	ENST00000263388.2:c.5336G>A	p.Gly1779Asp	p.G1779D	ENST00000263388	NM_000435.2	1779	gGc/gAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15280911	15280911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	114	938	0	ENST00000263388.2:c.5185G>A	p.Ala1729Thr	p.A1729T	ENST00000263388	NM_000435.2	1729	Gcc/Acc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946822	17946822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	116	914	0	ENST00000458235.1:c.1825G>T	p.Asp609Tyr	p.D609Y	ENST00000458235	NM_000215.3	609	Gac/Tac																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953881	17953881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	280	978	0	ENST00000458235.1:c.521C>T	p.Ala174Val	p.A174V	ENST00000458235	NM_000215.3	174	gCg/gTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953956	17953956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	303	955	0	ENST00000458235.1:c.446G>A	p.Arg149His	p.R149H	ENST00000458235	NM_000215.3	149	cGc/cAc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266888	18266888	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	120	610	0	ENST00000222254.8:c.199C>T	p.Arg67Ter	p.R67*	ENST00000222254	NM_005027.3	67	Cga/Tga																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256823	19256823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	84	553	0	ENST00000162023.5:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000162023		297	cGa/cAa																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260105	19260105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	228	931	0	ENST00000162023.5:c.188A>G	p.Asp63Gly	p.D63G	ENST00000162023		63	gAc/gGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218825	36218825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	268	1040	1	ENST00000222270.7:c.4436C>T	p.Ser1479Leu	p.S1479L	ENST00000222270	NM_014727.1	1479	tCg/tTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227822	36227822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	145	1025	1	ENST00000222270.7:c.7307G>A	p.Arg2436Lys	p.R2436K	ENST00000222270	NM_014727.1	2436	aGa/aAa																																																																														
AXL	558	MSKCC	GRCh37	19	41743874	41743874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	117	906	4	ENST00000301178.4:c.809G>A	p.Gly270Asp	p.G270D	ENST00000301178	NM_021913.4	270	gGc/gAc																																																																														
AXL	558	MSKCC	GRCh37	19	41758825	41758825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	113	845	3	ENST00000301178.4:c.1879G>T	p.Asp627Tyr	p.D627Y	ENST00000301178	NM_021913.4	627	Gac/Tac																																																																														
CIC	23152	MSKCC	GRCh37	19	42794596	42794596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	63	1056	0	ENST00000575354.2:c.1676C>T	p.Ala559Val	p.A559V	ENST00000575354	NM_015125.3	559	gCc/gTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794719	42794719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	155	992	0	ENST00000575354.2:c.1799G>A	p.Arg600His	p.R600H	ENST00000575354	NM_015125.3	600	cGc/cAc																																																																														
BBC3	27113	MSKCC	GRCh37	19	47731692	47731692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	68	377	3	ENST00000449228.1:c.100C>T	p.Arg34Cys	p.R34C	ENST00000449228	NM_001127240.2	34	Cgc/Tgc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714594	52714594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	92	885	0	ENST00000322088.6:c.352G>A	p.Glu118Lys	p.E118K	ENST00000322088	NM_014225.5	118	Gag/Aag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52729220	52729220	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	75	668	1	ENST00000322088.6:c.1756C>A	p.Leu586Met	p.L586M	ENST00000322088	NM_014225.5	586	Ctg/Atg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982502	25982502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	45	228	0	ENST00000435504.4:c.788G>T	p.Arg263Ile	p.R263I	ENST00000435504		263	aGa/aTa																																																																														
ALK	238	MSKCC	GRCh37	2	29416302	29416302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	104	796	1	ENST00000389048.3:c.4651C>A	p.Pro1551Thr	p.P1551T	ENST00000389048	NM_004304.4	1551	Ccg/Acg																																																																														
ALK	238	MSKCC	GRCh37	2	29443676	29443676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56315533		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	147	705	3	ENST00000389048.3:c.3541C>T	p.Arg1181Cys	p.R1181C	ENST00000389048	NM_004304.4	1181	Cgc/Tgc																																																																														
ALK	238	MSKCC	GRCh37	2	29754847	29754847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	66	565	1	ENST00000389048.3:c.1088C>T	p.Ala363Val	p.A363V	ENST00000389048	NM_004304.4	363	gCc/gTc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639587	47639587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	92	322	0	ENST00000233146.2:c.680G>T	p.Arg227Ile	p.R227I	ENST00000233146	NM_000251.2	227	aGa/aTa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47705610	47705610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	53	318	1	ENST00000233146.2:c.2410G>A	p.Ala804Thr	p.A804T	ENST00000233146	NM_000251.2	804	Gca/Aca																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027712	48027712	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	39	274	0	ENST00000234420.5:c.2590G>T	p.Gly864Ter	p.G864*	ENST00000234420	NM_000179.2	864	Gga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028161	48028161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	27	333	0	ENST00000234420.5:c.3039G>T	p.Lys1013Asn	p.K1013N	ENST00000234420	NM_000179.2	1013	aaG/aaT																																																																														
REL	5966	MSKCC	GRCh37	2	61118821	61118821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146326268		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	25	169	1	ENST00000295025.8:c.14C>T	p.Ala5Val	p.A5V	ENST00000295025	NM_002908.2	5	gCg/gTg																																																																														
REL	5966	MSKCC	GRCh37	2	61145357	61145357	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	26	278	0	ENST00000295025.8:c.567T>A	p.Cys189Ter	p.C189*	ENST00000295025	NM_002908.2	189	tgT/tgA																																																																														
REL	5966	MSKCC	GRCh37	2	61149129	61149129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144119768		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	57	370	0	ENST00000295025.8:c.1319C>T	p.Ser440Leu	p.S440L	ENST00000295025	NM_002908.2	440	tCg/tTg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715351	61715351	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	92	647	0	ENST00000401558.2:c.2262A>C	p.Glu754Asp	p.E754D	ENST00000401558	NM_003400.3	754	gaA/gaC																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	80	571	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719307	61719307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	32	345	1	ENST00000401558.2:c.1750G>A	p.Ala584Thr	p.A584T	ENST00000401558	NM_003400.3	584	Gct/Act																																																																														
XPO1	7514	MSKCC	GRCh37	2	61720085	61720085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	119	324	0	ENST00000401558.2:c.1349C>A	p.Ser450Tyr	p.S450Y	ENST00000401558	NM_003400.3	450	tCc/tAc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61724120	61724120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	49	277	0	ENST00000401558.2:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000401558	NM_003400.3	261	cGa/cAa																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96920736	96920736	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	67	346	0	ENST00000258439.3:c.245-1G>A		p.X82_splice	ENST00000258439	NM_001193304.2	82																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99160452	99160452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	60	504	0	ENST00000074304.5:c.931G>A	p.Asp311Asn	p.D311N	ENST00000074304	NM_001134224.1	311	Gac/Aac																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182493	99182493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	97	710	1	ENST00000074304.5:c.2296G>A	p.Asp766Asn	p.D766N	ENST00000074304	NM_001134224.1	766	Gac/Aac																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99189367	99189367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	79	685	0	ENST00000074304.5:c.2623G>A	p.Asp875Asn	p.D875N	ENST00000074304	NM_001134224.1	875	Gac/Aac																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038082	128038082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	137	451	0	ENST00000285398.2:c.1468G>A	p.Glu490Lys	p.E490K	ENST00000285398	NM_000122.1	490	Gaa/Aaa																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872738	136872738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	55	430	0	ENST00000241393.3:c.760C>T	p.Pro254Ser	p.P254S	ENST00000241393	NM_003467.2	254	Cct/Tct																																																																														
PMS1	5378	MSKCC	GRCh37	2	190738327	190738327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	63	249	0	ENST00000441310.2:c.2579G>A	p.Arg860Lys	p.R860K	ENST00000441310	NM_000534.4	860	aGa/aAa																																																																														
CASP8	841	MSKCC	GRCh37	2	202149662	202149662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	105	508	0	ENST00000358485.4:c.1103G>A	p.Cys368Tyr	p.C368Y	ENST00000358485	NM_001080125.1	368	tGc/tAc																																																																														
CASP8	841	MSKCC	GRCh37	2	202150013	202150013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	84	659	0	ENST00000358485.4:c.1454G>A	p.Cys485Tyr	p.C485Y	ENST00000358485	NM_001080125.1	485	tGc/tAc																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204737441	204737441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	58	283	0	ENST00000302823.3:c.578G>T	p.Arg193Ile	p.R193I	ENST00000302823	NM_005214.4	193	aGa/aTa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	70	293	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578365	212578365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	83	259	0	ENST00000342788.4:c.892G>A	p.Val298Met	p.V298M	ENST00000342788	NM_005235.2	298	Gtg/Atg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989562	212989562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	53	366	0	ENST00000342788.4:c.149G>A	p.Arg50His	p.R50H	ENST00000342788	NM_005235.2	50	cGc/cAc																																																																														
BARD1	580	MSKCC	GRCh37	2	215645983	215645984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	52	435	0	ENST00000260947.4:c.614dup	p.Gln206AlafsTer8	p.Q206Afs*8	ENST00000260947	NM_000465.2	205	aag/aaAg																																																																														
BARD1	580	MSKCC	GRCh37	2	215646149	215646149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	100	434	0	ENST00000260947.4:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000260947	NM_000465.2	150	cGa/cAa																																																																														
BARD1	580	MSKCC	GRCh37	2	215646178	215646178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	60	342	0	ENST00000260947.4:c.420G>T	p.Lys140Asn	p.K140N	ENST00000260947	NM_000465.2	140	aaG/aaT																																																																														
BARD1	580	MSKCC	GRCh37	2	215657050	215657050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	60	340	0	ENST00000260947.4:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000260947	NM_000465.2	112	cGa/cAa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225338988	225338988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	35	365	0	ENST00000264414.4:c.2281C>T	p.Arg761Cys	p.R761C	ENST00000264414	NM_003590.4	761	Cgc/Tgc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225346699	225346699	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	125	413	0	ENST00000264414.4:c.1939G>T	p.Glu647Ter	p.E647*	ENST00000264414	NM_003590.4	647	Gaa/Taa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661884	227661884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	129	1092	1	ENST00000305123.5:c.1571G>T	p.Arg524Ile	p.R524I	ENST00000305123	NM_005544.2	524	aGa/aTa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546673	9546673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	37	440	0	ENST00000353224.5:c.1349C>T	p.Ala450Val	p.A450V	ENST00000353224	NM_177990.2	450	gCc/gTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561195	9561195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	45	424	0	ENST00000353224.5:c.587C>T	p.Ser196Phe	p.S196F	ENST00000353224	NM_177990.2	196	tCt/tTt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023958	31023958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	75	699	0	ENST00000375687.4:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000375687	NM_015338.5	1148	cGc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733276	40733276	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	75	579	0	ENST00000373198.4:c.3530C>A	p.Ser1177Tyr	p.S1177Y	ENST00000373198	NM_133170.3	1177	tCt/tAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739040	40739040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	72	670	0	ENST00000373198.4:c.3244C>A	p.Leu1082Met	p.L1082M	ENST00000373198	NM_133170.3	1082	Ctg/Atg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	52	458	0	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980918	40980918	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	28	422	0	ENST00000373198.4:c.1568A>G	p.Tyr523Cys	p.Y523C	ENST00000373198	NM_133170.3	523	tAc/tGc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256758	46256758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	94	347	1	ENST00000371998.3:c.814G>A	p.Asp272Asn	p.D272N	ENST00000371998		272	Gat/Aat																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265474	46265474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	19	178	0	ENST00000371998.3:c.2344G>T	p.Asp782Tyr	p.D782Y	ENST00000371998		782	Gac/Tac																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319945	62319945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	123	895	0	ENST00000508582.2:c.1859G>A	p.Gly620Asp	p.G620D	ENST00000508582		620	gGc/gAc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755516	39755516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	105	497	0	ENST00000288319.7:c.1249T>C	p.Tyr417His	p.Y417H	ENST00000288319	NM_182918.3	417	Tac/Cac																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45651216	45651216	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200793282		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	108	731	1	ENST00000407780.3:c.809C>T	p.Ala270Val	p.A270V	ENST00000407780	NM_001283052.1	270	gCg/gTg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655166	45655166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	157	547	0	ENST00000407780.3:c.686G>A	p.Gly229Asp	p.G229D	ENST00000407780	NM_001283052.1	229	gGc/gAc																																																																														
NF2	4771	MSKCC	GRCh37	22	30070911	30070911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	94	761	0	ENST00000338641.4:c.1427C>T	p.Ala476Val	p.A476V	ENST00000338641	NM_000268.3	476	gCc/gTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41536164	41536164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	164	429	0	ENST00000263253.7:c.1781C>T	p.Thr594Met	p.T594M	ENST00000263253	NM_001429.3	594	aCg/aTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41545897	41545897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	143	925	0	ENST00000263253.7:c.2512C>T	p.Arg838Cys	p.R838C	ENST00000263253	NM_001429.3	838	Cgt/Tgt																																																																														
EP300	2033	MSKCC	GRCh37	22	41558740	41558740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	83	301	0	ENST00000263253.7:c.3685G>A	p.Glu1229Lys	p.E1229K	ENST00000263253	NM_001429.3	1229	Gaa/Aaa																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458537	12458537	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140204299		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	193	662	1	ENST00000287820.6:c.1154G>A	p.Arg385Gln	p.R385Q	ENST00000287820	NM_015869.4	385	cGa/cAa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37050378	37050378	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	99	282	0	ENST00000231790.2:c.527T>G	p.Ile176Ser	p.I176S	ENST00000231790	NM_000249.3	176	aTt/aGt																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182052	38182052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1190702008		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	72	558	1	ENST00000396334.3:c.676G>A	p.Glu226Lys	p.E226K	ENST00000396334	NM_002468.4	226	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267063	41267063	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	70	320	0	ENST00000349496.5:c.734G>A	p.Gly245Asp	p.G245D	ENST00000349496	NM_001904.3	245	gGt/gAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268762	41268762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	40	386	1	ENST00000349496.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000349496	NM_001904.3	334	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275360	41275360	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	120	303	0	ENST00000349496.5:c.1524+2T>C		p.X508_splice	ENST00000349496	NM_001904.3	508																																																																															
SETD2	29072	MSKCC	GRCh37	3	47061277	47061277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	186	428	0	ENST00000409792.3:c.7404G>T	p.Lys2468Asn	p.K2468N	ENST00000409792	NM_014159.6	2468	aaG/aaT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47144880	47144880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	50	392	0	ENST00000409792.3:c.4873C>T	p.Arg1625Cys	p.R1625C	ENST00000409792	NM_014159.6	1625	Cgt/Tgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161973	47161973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	48	328	0	ENST00000409792.3:c.4153G>A	p.Glu1385Lys	p.E1385K	ENST00000409792	NM_014159.6	1385	Gaa/Aaa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442502	52442502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	43	447	0	ENST00000460680.1:c.243C>A	p.Phe81Leu	p.F81L	ENST00000460680	NM_004656.3	81	ttC/ttA																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643399	52643399	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146395938		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	62	430	0	ENST00000394830.3:c.2497C>T	p.Arg833Cys	p.R833C	ENST00000394830	NM_018313.4	833	Cgc/Tgc																																																																														
MITF	4286	MSKCC	GRCh37	3	70008432	70008432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	32	249	0	ENST00000352241.4:c.1022G>A	p.Arg341His	p.R341H	ENST00000352241	NM_198159.2	341	cGc/cAc																																																																														
MITF	4286	MSKCC	GRCh37	3	70014359	70014359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	166	668	0	ENST00000352241.4:c.1523G>T	p.Arg508Met	p.R508M	ENST00000352241	NM_198159.2	508	aGg/aTg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026984	71026984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	81	491	1	ENST00000318789.4:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000318789	NM_032682.5	448	tCg/tTg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799734	72799734	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	155	622	0	ENST00000325599.8:c.1435G>T	p.Glu479Ter	p.E479*	ENST00000325599	NM_018130.2	479	Gaa/Taa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72866502	72866502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	32	282	0	ENST00000325599.8:c.761G>A	p.Arg254Gln	p.R254Q	ENST00000325599	NM_018130.2	254	cGa/cAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259653	89259653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	14	245	0	ENST00000336596.2:c.797G>T	p.Arg266Ile	p.R266I	ENST00000336596	NM_005233.5	266	aGa/aTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390138	89390138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	81	315	1	ENST00000336596.2:c.887C>T	p.Thr296Ile	p.T296I	ENST00000336596	NM_005233.5	296	aCt/aTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390923	89390923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	34	335	0	ENST00000336596.2:c.989G>T	p.Arg330Ile	p.R330I	ENST00000336596	NM_005233.5	330	aGa/aTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462381	89462381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	86	535	1	ENST00000336596.2:c.1853C>T	p.Ala618Val	p.A618V	ENST00000336596	NM_005233.5	618	gCc/gTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499366	89499366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	120	418	0	ENST00000336596.2:c.2536C>T	p.Pro846Ser	p.P846S	ENST00000336596	NM_005233.5	846	Ccc/Tcc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119631596	119631596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	86	350	0	ENST00000316626.5:c.670G>A	p.Ala224Thr	p.A224T	ENST00000316626		224	Gca/Aca																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134514513	134514513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	160	678	0	ENST00000398015.3:c.40G>A	p.Ala14Thr	p.A14T	ENST00000398015	NM_004441.4	14	Gca/Aca																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138409963	138409963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	53	283	0	ENST00000289153.2:c.1915C>A	p.Leu639Ile	p.L639I	ENST00000289153	NM_006219.2	639	Ctt/Att																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474703	138474703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	53	457	0	ENST00000289153.2:c.290G>A	p.Arg97Gln	p.R97Q	ENST00000289153	NM_006219.2	97	cGa/cAa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474772	138474772	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	49	398	0	ENST00000289153.2:c.221A>G	p.Asp74Gly	p.D74G	ENST00000289153	NM_006219.2	74	gAt/gGt																																																																														
ATR	545	MSKCC	GRCh37	3	142189026	142189026	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	33	235	0	ENST00000350721.4:c.6222-1G>T		p.X2074_splice	ENST00000350721	NM_001184.3	2074																																																																															
ATR	545	MSKCC	GRCh37	3	142272744	142272744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	59	465	0	ENST00000350721.4:c.2455G>A	p.Asp819Asn	p.D819N	ENST00000350721	NM_001184.3	819	Gat/Aat																																																																														
ATR	545	MSKCC	GRCh37	3	142281507	142281507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	181	552	0	ENST00000350721.4:c.737C>T	p.Ser246Phe	p.S246F	ENST00000350721	NM_001184.3	246	tCc/tTc																																																																														
ATR	545	MSKCC	GRCh37	3	142281802	142281802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	59	440	0	ENST00000350721.4:c.442G>A	p.Glu148Lys	p.E148K	ENST00000350721	NM_001184.3	148	Gaa/Aaa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260151	149260151	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	247	617	1	ENST00000360632.3:c.742C>T	p.Arg248Ter	p.R248*	ENST00000360632	NM_015472.4	248	Cga/Tga																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374688	149374688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	284	805	0	ENST00000360632.3:c.406G>A	p.Ala136Thr	p.A136T	ENST00000360632	NM_015472.4	136	Gcc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	52	574	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	119	607	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	75	374	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951989	178951989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	61	337	0	ENST00000263967.3:c.3044C>A	p.Ser1015Tyr	p.S1015Y	ENST00000263967	NM_006218.2	1015	tCt/tAt																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182679136	182679136	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202126248		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	34	341	0	ENST00000292782.4:c.398G>A	p.Ser133Asn	p.S133N	ENST00000292782	NM_020640.2	133	aGc/aAc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504384	186504384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	37	345	0	ENST00000323963.5:c.721G>A	p.Glu241Lys	p.E241K	ENST00000323963		241	Gaa/Aaa																																																																														
BCL6	604	MSKCC	GRCh37	3	187443345	187443345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	61	487	0	ENST00000232014.4:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000232014	NM_001130845.1	594	cGa/cAa																																																																														
BCL6	604	MSKCC	GRCh37	3	187447195	187447195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	188	757	0	ENST00000232014.4:c.998G>A	p.Ser333Asn	p.S333N	ENST00000232014	NM_001130845.1	333	aGc/aAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806668	1806668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	143	1099	0	ENST00000260795.2:c.1384G>A	p.Asp462Asn	p.D462N	ENST00000260795		462	Gac/Aac																																																																														
WHSC1	0	MSKCC	GRCh37	4	1919941	1919941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	206	672	1	ENST00000382891.5:c.1001G>A	p.Ser334Asn	p.S334N	ENST00000382891	NM_133335.3	334	aGc/aAc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1977026	1977026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	50	761	0	ENST00000382891.5:c.3520G>A	p.Glu1174Lys	p.E1174K	ENST00000382891	NM_133335.3	1174	Gag/Aag																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747895	41747895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	148	618	3	ENST00000226382.2:c.874G>A	p.Ala292Thr	p.A292T	ENST00000226382	NM_003924.3	292	Gcc/Acc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748173	41748173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	94	690	0	ENST00000226382.2:c.596G>A	p.Gly199Asp	p.G199D	ENST00000226382	NM_003924.3	199	gGt/gAt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749376	41749376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	87	362	0	ENST00000226382.2:c.419C>T	p.Ala140Val	p.A140V	ENST00000226382	NM_003924.3	140	gCg/gTg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139837	55139837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	153	526	3	ENST00000257290.5:c.1498C>T	p.Arg500Ter	p.R500*	ENST00000257290	NM_006206.4	500	Cga/Tga																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144084	55144084	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	121	454	0	ENST00000257290.5:c.1913A>C	p.Lys638Thr	p.K638T	ENST00000257290	NM_006206.4	638	aAa/aCa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156696	55156696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	109	438	0	ENST00000257290.5:c.3097G>A	p.Asp1033Asn	p.D1033N	ENST00000257290	NM_006206.4	1033	Gac/Aac																																																																														
KIT	3815	MSKCC	GRCh37	4	55565811	55565811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	69	424	0	ENST00000288135.5:c.635C>A	p.Pro212His	p.P212H	ENST00000288135	NM_000222.2	212	cCt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55589771	55589771	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	91	392	1	ENST00000288135.5:c.1253A>G	p.Tyr418Cys	p.Y418C	ENST00000288135	NM_000222.2	418	tAc/tGc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955545	55955545	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	58	411	0	ENST00000263923.4:c.3400G>T	p.Glu1134Ter	p.E1134*	ENST00000263923	NM_002253.2	1134	Gaa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55961109	55961109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	93	740	0	ENST00000263923.4:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000263923	NM_002253.2	944	cGa/cAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55961766	55961766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	131	408	0	ENST00000263923.4:c.2795G>T	p.Arg932Ile	p.R932I	ENST00000263923	NM_002253.2	932	aGa/aTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55964370	55964370	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	105	552	0	ENST00000263923.4:c.2443G>T	p.Glu815Ter	p.E815*	ENST00000263923	NM_002253.2	815	Gaa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	89	698	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55970948	55970948	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	66	572	0	ENST00000263923.4:c.1849T>A	p.Phe617Ile	p.F617I	ENST00000263923	NM_002253.2	617	Ttc/Atc																																																																														
KDR	3791	MSKCC	GRCh37	4	55981172	55981172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	83	415	0	ENST00000263923.4:c.527G>T	p.Arg176Ile	p.R176I	ENST00000263923	NM_002253.2	176	aGa/aTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55981572	55981572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	36	218	0	ENST00000263923.4:c.365G>T	p.Arg122Ile	p.R122I	ENST00000263923	NM_002253.2	122	aGa/aTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467838	66467838	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	27	330	0	ENST00000273854.3:c.431T>G	p.Leu144Arg	p.L144R	ENST00000273854	NM_004439.5	144	cTg/cGg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143226689	143226689	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs149208667		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	43	274	0	ENST00000262992.4:c.425G>A	p.Arg142Gln	p.R142Q	ENST00000262992	NM_001101669.1	142	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244184	153244184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759610249		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	56	489	0	ENST00000281708.4:c.1973G>A	p.Arg658Gln	p.R658Q	ENST00000281708	NM_033632.3	658	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251901	153251901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	150	385	0	ENST00000281708.4:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000281708	NM_033632.3	369	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332915	153332915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200698994		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	46	425	0	ENST00000281708.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000281708	NM_033632.3	14	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509796	187509796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	65	336	0	ENST00000441802.2:c.13717G>A	p.Glu4573Lys	p.E4573K	ENST00000441802	NM_005245.3	4573	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518228	187518228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199692977		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	51	418	0	ENST00000441802.2:c.12466G>A	p.Glu4156Lys	p.E4156K	ENST00000441802	NM_005245.3	4156	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521187	187521187	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	62	740	1	ENST00000441802.2:c.11968A>C	p.Asn3990His	p.N3990H	ENST00000441802	NM_005245.3	3990	Aac/Cac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524677	187524677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	238	815	0	ENST00000441802.2:c.11003G>A	p.Arg3668Gln	p.R3668Q	ENST00000441802	NM_005245.3	3668	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530342	187530342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	22	266	0	ENST00000441802.2:c.10201G>A	p.Glu3401Lys	p.E3401K	ENST00000441802	NM_005245.3	3401	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628125	187628125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	197	715	0	ENST00000441802.2:c.2857G>A	p.Asp953Asn	p.D953N	ENST00000441802	NM_005245.3	953	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628882	187628882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	97	610	0	ENST00000441802.2:c.2100G>T	p.Glu700Asp	p.E700D	ENST00000441802	NM_005245.3	700	gaG/gaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630114	187630114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	160	588	0	ENST00000441802.2:c.868G>A	p.Ala290Thr	p.A290T	ENST00000441802	NM_005245.3	290	Gca/Aca																																																																														
SDHA	6389	MSKCC	GRCh37	5	228303	228303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	45	243	0	ENST00000264932.6:c.625C>A	p.Leu209Met	p.L209M	ENST00000264932	NM_004168.2	209	Ctg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295210	1295210	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	99	371	0				ENST00000310581	NM_198253.2																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31410987	31410987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	74	664	0	ENST00000344624.3:c.3533G>A	p.Arg1178Gln	p.R1178Q	ENST00000344624		1178	cGa/cAa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31464410	31464410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	94	789	0	ENST00000344624.3:c.2507G>A	p.Arg836Gln	p.R836Q	ENST00000344624		836	cGa/cAa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945694	38945694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	31	276	0	ENST00000357387.3:c.4532G>A	p.Gly1511Glu	p.G1511E	ENST00000357387	NM_152756.3	1511	gGa/gAa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38978694	38978694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	35	386	0	ENST00000357387.3:c.812G>A	p.Gly271Glu	p.G271E	ENST00000357387	NM_152756.3	271	gGa/gAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56152566	56152566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	78	283	0	ENST00000399503.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000399503	NM_005921.1	208	Cga/Tga																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178443	56178443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	40	255	0	ENST00000399503.3:c.3416C>A	p.Ser1139Tyr	p.S1139Y	ENST00000399503	NM_005921.1	1139	tCt/tAt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754897	57754897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	61	283	0	ENST00000274289.3:c.293A>G	p.Glu98Gly	p.E98G	ENST00000274289	NM_006622.3	98	gAg/gGg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	33	215	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	35	238	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
MSH3	4437	MSKCC	GRCh37	5	79952236	79952236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	39	220	0	ENST00000265081.6:c.244G>A	p.Glu82Lys	p.E82K	ENST00000265081	NM_002439.4	82	Gaa/Aaa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79961018	79961018	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	38	488	0	ENST00000265081.6:c.415G>T	p.Glu139Ter	p.E139*	ENST00000265081	NM_002439.4	139	Gaa/Taa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79974884	79974884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	63	424	0	ENST00000265081.6:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000265081	NM_002439.4	438	Gcg/Acg																																																																														
MSH3	4437	MSKCC	GRCh37	5	80064823	80064823	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	24	197	0	ENST00000265081.6:c.2253+1G>A		p.X751_splice	ENST00000265081	NM_002439.4	751																																																																															
RASA1	5921	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	52	263	0	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	128	296	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	90	219	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	25	336	1	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911514	131911514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143802516		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	51	344	0	ENST00000265335.6:c.259C>T	p.Arg87Cys	p.R87C	ENST00000265335		87	Cgt/Tgt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149447843	149447843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	58	927	5	ENST00000286301.3:c.1561G>A	p.Ala521Thr	p.A521T	ENST00000286301	NM_005211.3	521	Gcc/Acc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636719	176636719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140095431		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	62	398	0	ENST00000439151.2:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000439151	NM_022455.4	440	cGa/cAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637034	176637034	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137993153		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	136	571	0	ENST00000439151.2:c.1634C>T	p.Thr545Met	p.T545M	ENST00000439151	NM_022455.4	545	aCg/aTg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638875	176638875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	301	652	1	ENST00000439151.2:c.3475C>T	p.Arg1159Trp	p.R1159W	ENST00000439151	NM_022455.4	1159	Cgg/Tgg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673790	176673790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	99	372	0	ENST00000439151.2:c.4490G>A	p.Gly1497Asp	p.G1497D	ENST00000439151	NM_022455.4	1497	gGc/gAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176678848	176678848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	29	331	0	ENST00000439151.2:c.4759C>T	p.Arg1587Cys	p.R1587C	ENST00000439151	NM_022455.4	1587	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176687063	176687063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	104	461	0	ENST00000439151.2:c.5040G>T	p.Lys1680Asn	p.K1680N	ENST00000439151	NM_022455.4	1680	aaG/aaT																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048764	180048764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	100	1123	1	ENST00000261937.6:c.1798G>A	p.Asp600Asn	p.D600N	ENST00000261937	NM_182925.4	600	Gat/Aat																																																																														
IRF4	3662	MSKCC	GRCh37	6	398855	398855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	78	605	0	ENST00000380956.4:c.665C>T	p.Ala222Val	p.A222V	ENST00000380956	NM_001195286.1	222	gCt/gTt																																																																														
IRF4	3662	MSKCC	GRCh37	6	405092	405092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	108	647	0	ENST00000380956.4:c.1174C>T	p.Pro392Ser	p.P392S	ENST00000380956	NM_001195286.1	392	Cca/Tca																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225626	26225626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	241	546	0	ENST00000360408.1:c.244G>A	p.Asp82Asn	p.D82N	ENST00000360408	NM_003532.2	82	Gac/Aac																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	122	399	1	ENST00000412585.2:c.626dupC	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32165351	32165351	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	140	937	0	ENST00000375023.3:c.4777T>G	p.Ser1593Ala	p.S1593A	ENST00000375023	NM_004557.3	1593	Tca/Gca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166770	32166770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	270	954	3	ENST00000375023.3:c.4468C>T	p.Arg1490Trp	p.R1490W	ENST00000375023	NM_004557.3	1490	Cgg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188210	32188210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	89	770	0	ENST00000375023.3:c.1131C>A	p.Phe377Leu	p.F377L	ENST00000375023	NM_004557.3	377	ttC/ttA																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818836	32818836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	311	704	1	ENST00000354258.4:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000354258	NM_000593.5	372	cGa/cAa																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64289970	64289970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	68	335	0	ENST00000370651.3:c.413G>A	p.Arg138His	p.R138H	ENST00000370651	NM_003463.4	138	cGt/cAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955139	93955139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	56	423	0	ENST00000369303.4:c.2759C>G	p.Pro920Arg	p.P920R	ENST00000369303	NM_004440.3	920	cCt/cGt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967185	93967185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	74	443	0	ENST00000369303.4:c.2167C>T	p.Leu723Phe	p.L723F	ENST00000369303	NM_004440.3	723	Ctc/Ttc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93968000	93968000	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	44	338	0	ENST00000369303.4:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000369303	NM_004440.3	643	Gaa/Taa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974398	93974398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	37	372	0	ENST00000369303.4:c.1656G>T	p.Gln552His	p.Q552H	ENST00000369303	NM_004440.3	552	caG/caT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120461	94120461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	23	319	0	ENST00000369303.4:c.590C>T	p.Ser197Phe	p.S197F	ENST00000369303	NM_004440.3	197	tCt/tTt																																																																														
FYN	2534	MSKCC	GRCh37	6	112041046	112041046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	97	544	0	ENST00000368678.4:c.209C>T	p.Ser70Leu	p.S70L	ENST00000368678		70	tCg/tTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642545	117642545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	184	576	0	ENST00000368508.3:c.5654G>T	p.Arg1885Ile	p.R1885I	ENST00000368508	NM_002944.2	1885	aGa/aTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678062	117678062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	38	290	0	ENST00000368508.3:c.3871G>A	p.Glu1291Lys	p.E1291K	ENST00000368508	NM_002944.2	1291	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686282	117686282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	35	274	0	ENST00000368508.3:c.3059C>A	p.Pro1020His	p.P1020H	ENST00000368508	NM_002944.2	1020	cCt/cAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686839	117686839	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	58	366	0	ENST00000368508.3:c.2878G>T	p.Gly960Ter	p.G960*	ENST00000368508	NM_002944.2	960	Gga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117700235	117700235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	81	462	1	ENST00000368508.3:c.2584C>A	p.Leu862Ile	p.L862I	ENST00000368508	NM_002944.2	862	Ctt/Att																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706904	117706904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	70	395	2	ENST00000368508.3:c.2246G>T	p.Gly749Val	p.G749V	ENST00000368508	NM_002944.2	749	gGg/gTg																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137525534	137525534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	96	562	0	ENST00000367739.4:c.481T>C	p.Tyr161His	p.Y161H	ENST00000367739	NM_000416.2	161	Tat/Cat																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137527318	137527318	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	177	582	0	ENST00000367739.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000367739	NM_000416.2	110	Gaa/Taa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004616	150004616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150904756		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	178	634	2	ENST00000253339.5:c.1609G>A	p.Ala537Thr	p.A537T	ENST00000253339		537	Gct/Act																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099529	157099529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	39	220	1	ENST00000346085.5:c.466C>A	p.Gln156Lys	p.Q156K	ENST00000346085	NM_020732.3	156	Cag/Aag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528594	157528594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	94	755	0	ENST00000346085.5:c.6319C>T	p.Arg2107Cys	p.R2107C	ENST00000346085	NM_020732.3	2107	Cgt/Tgt																																																																														
PARK2	0	MSKCC	GRCh37	6	162206852	162206852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	59	452	0	ENST00000366898.1:c.823C>T	p.Arg275Trp	p.R275W	ENST00000366898	NM_004562.2	275	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976742	2976742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	86	983	0	ENST00000396946.4:c.1270C>T	p.Arg424Trp	p.R424W	ENST00000396946	NM_032415.4	424	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976745	2976745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	125	988	1	ENST00000396946.4:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000396946	NM_032415.4	423	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976831	2976831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	103	899	0	ENST00000396946.4:c.1181C>T	p.Ser394Leu	p.S394L	ENST00000396946	NM_032415.4	394	tCg/tTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985503	2985503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	88	480	0	ENST00000396946.4:c.308A>G	p.Tyr103Cys	p.Y103C	ENST00000396946	NM_032415.4	103	tAc/tGc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2998137	2998137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	140	1086	0	ENST00000396946.4:c.4C>T	p.Pro2Ser	p.P2S	ENST00000396946	NM_032415.4	2	Cca/Tca																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026709	6026709	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	109	949	1	ENST00000265849.7:c.1687C>T	p.Arg563Ter	p.R563*	ENST00000265849	NM_000535.5	563	Cga/Tga																																																																														
RAC1	5879	MSKCC	GRCh37	7	6438336	6438336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	88	485	0	ENST00000356142.4:c.269A>G	p.Asp90Gly	p.D90G	ENST00000356142	NM_018890.3	90	gAc/gGc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729747	41729747	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	127	547	0	ENST00000242208.4:c.782A>C	p.Lys261Thr	p.K261T	ENST00000242208	NM_002192.2	261	aAg/aCg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730107	41730107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	134	494	0	ENST00000242208.4:c.422C>T	p.Ser141Phe	p.S141F	ENST00000242208	NM_002192.2	141	tCc/tTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81331991	81331991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	65	267	0	ENST00000222390.5:c.2093C>T	p.Ala698Val	p.A698V	ENST00000222390	NM_000601.4	698	gCc/gTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81336607	81336607	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	61	228	0	ENST00000222390.5:c.1615C>T	p.Arg539Ter	p.R539*	ENST00000222390	NM_000601.4	539	Cga/Tga																																																																														
HGF	3082	MSKCC	GRCh37	7	81372710	81372710	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	44	368	0	ENST00000222390.5:c.824A>G	p.Asp275Gly	p.D275G	ENST00000222390	NM_000601.4	275	gAc/gGc																																																																														
CDK6	1021	MSKCC	GRCh37	7	92404108	92404108	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	54	418	0	ENST00000265734.4:c.271G>T	p.Glu91Ter	p.E91*	ENST00000265734	NM_001259.6	91	Gaa/Taa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508940	106508940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	118	484	0	ENST00000359195.3:c.934G>T	p.Asp312Tyr	p.D312Y	ENST00000359195	NM_002649.2	312	Gac/Tac																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508955	106508955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	57	513	0	ENST00000359195.3:c.949G>A	p.Glu317Lys	p.E317K	ENST00000359195	NM_002649.2	317	Gag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509063	106509063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	69	696	0	ENST00000359195.3:c.1057T>C	p.Ser353Pro	p.S353P	ENST00000359195	NM_002649.2	353	Tcc/Ccc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509652	106509652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	82	568	0	ENST00000359195.3:c.1646A>G	p.Asn549Ser	p.N549S	ENST00000359195	NM_002649.2	549	aAc/aGc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513287	106513287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	85	291	0	ENST00000359195.3:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000359195	NM_002649.2	731	Gac/Aac																																																																														
MET	4233	MSKCC	GRCh37	7	116397714	116397714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	50	487	0	ENST00000397752.3:c.1988C>T	p.Ser663Leu	p.S663L	ENST00000397752	NM_000245.2	663	tCg/tTg																																																																														
MET	4233	MSKCC	GRCh37	7	116418886	116418886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	49	387	0	ENST00000397752.3:c.3397G>T	p.Asp1133Tyr	p.D1133Y	ENST00000397752	NM_000245.2	1133	Gat/Tat																																																																														
SMO	6608	MSKCC	GRCh37	7	128829231	128829231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	184	773	1	ENST00000249373.3:c.239G>A	p.Gly80Asp	p.G80D	ENST00000249373	NM_005631.4	80	gGc/gAc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511205	148511205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	67	588	2	ENST00000320356.2:c.1697G>A	p.Arg566His	p.R566H	ENST00000320356	NM_004456.4	566	cGc/cAc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523708	148523708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	67	248	0	ENST00000320356.2:c.745G>A	p.Glu249Lys	p.E249K	ENST00000320356	NM_004456.4	249	Gaa/Aaa																																																																														
RHEB	6009	MSKCC	GRCh37	7	151174419	151174419	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	43	330	0	ENST00000262187.5:c.275G>T	p.Ser92Ile	p.S92I	ENST00000262187	NM_005614.3	92	aGt/aTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845973	151845973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	86	622	0	ENST00000262189.6:c.13039C>T	p.Pro4347Ser	p.P4347S	ENST00000262189	NM_170606.2	4347	Ccg/Tcg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884466	151884466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	110	317	0	ENST00000262189.6:c.4889C>T	p.Ser1630Leu	p.S1630L	ENST00000262189	NM_170606.2	1630	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945699	151945699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	143	533	0	ENST00000262189.6:c.1820C>T	p.Ser607Phe	p.S607F	ENST00000262189	NM_170606.2	607	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151946988	151946988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	64	349	0	ENST00000262189.6:c.1786C>A	p.Leu596Ile	p.L596I	ENST00000262189	NM_170606.2	596	Ctt/Att																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133386	38133386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	38	333	1	ENST00000317025.8:c.4087C>T	p.Pro1363Ser	p.P1363S	ENST00000317025	NM_023034.1	1363	Ccg/Tcg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38184331	38184331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	83	537	0	ENST00000317025.8:c.1625G>T	p.Arg542Met	p.R542M	ENST00000317025	NM_023034.1	542	aGg/aTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187330	38187330	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	51	520	0	ENST00000317025.8:c.1147C>T	p.Arg383Ter	p.R383*	ENST00000317025	NM_023034.1	383	Cga/Tga																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38272306	38272306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	94	696	0	ENST00000425967.3:c.2061G>T	p.Lys687Asn	p.K687N	ENST00000425967	NM_001174067.1	687	aaG/aaT																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371683	55371683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	122	909	0	ENST00000297316.4:c.373C>T	p.Arg125Cys	p.R125C	ENST00000297316	NM_022454.3	125	Cgc/Tgc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931826	68931826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	176	470	0	ENST00000288368.4:c.256G>A	p.Glu86Lys	p.E86K	ENST00000288368	NM_024870.2	86	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950493	68950493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	79	355	0	ENST00000288368.4:c.805G>A	p.Asp269Asn	p.D269N	ENST00000288368	NM_024870.2	269	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69012038	69012038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	138	559	1	ENST00000288368.4:c.2675G>T	p.Arg892Ile	p.R892I	ENST00000288368	NM_024870.2	892	aGa/aTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031751	69031751	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	50	540	0	ENST00000288368.4:c.3504+2T>C		p.X1168_splice	ENST00000288368	NM_024870.2	1168																																																																															
PREX2	80243	MSKCC	GRCh37	8	69143584	69143584	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142298071		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	21	269	0	ENST00000288368.4:c.4792G>A	p.Glu1598Lys	p.E1598K	ENST00000288368	NM_024870.2	1598	Gag/Aag																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964514	70964514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	79	703	1	ENST00000276594.2:c.1514G>A	p.Arg505His	p.R505H	ENST00000276594	NM_024504.3	505	cGc/cAc																																																																														
NBN	4683	MSKCC	GRCh37	8	90995064	90995064	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	46	359	0	ENST00000265433.3:c.57G>C	p.Leu19Phe	p.L19F	ENST00000265433	NM_002485.4	19	ttG/ttC																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737651	145737651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	99	1079	1	ENST00000428558.2:c.3112C>T	p.Arg1038Cys	p.R1038C	ENST00000428558	NM_004260.3	1038	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341111	8341111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	102	397	0	ENST00000356435.5:c.5105C>T	p.Ala1702Val	p.A1702V	ENST00000356435		1702	gCc/gTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404591	8404591	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	28	290	0	ENST00000356435.5:c.4156T>C	p.Tyr1386His	p.Y1386H	ENST00000356435		1386	Tac/Cac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449746	8449746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	54	532	0	ENST00000356435.5:c.3967C>T	p.Arg1323Cys	p.R1323C	ENST00000356435		1323	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500903	8500903	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	106	494	0	ENST00000356435.5:c.1979A>G	p.His660Arg	p.H660R	ENST00000356435		660	cAc/cGc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528596	8528596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	37	331	0	ENST00000356435.5:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000356435		179	cGa/cAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27206682	27206682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	87	478	1	ENST00000380036.4:c.2467G>T	p.Asp823Tyr	p.D823Y	ENST00000380036	NM_000459.3	823	Gac/Tac																																																																														
TEK	7010	MSKCC	GRCh37	9	27217701	27217701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	80	532	2	ENST00000380036.4:c.3007C>T	p.Arg1003Cys	p.R1003C	ENST00000380036	NM_000459.3	1003	Cgc/Tgc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570416	87570416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	113	836	0	ENST00000277120.3:c.2156G>A	p.Ser719Asn	p.S719N	ENST00000277120		719	aGc/aAc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635175	87635175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	73	624	0	ENST00000277120.3:c.2227T>C	p.Tyr743His	p.Y743H	ENST00000277120		743	Tac/Cac																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635265	87635265	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	72	542	3	ENST00000277120.3:c.2317C>A	p.Leu773Met	p.L773M	ENST00000277120		773	Ctg/Atg																																																																														
FANCC	2176	MSKCC	GRCh37	9	97869484	97869484	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	101	797	0	ENST00000289081.3:c.1397A>G	p.Asp466Gly	p.D466G	ENST00000289081	NM_000136.2	466	gAc/gGc																																																																														
FANCC	2176	MSKCC	GRCh37	9	97887408	97887408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	146	535	0	ENST00000289081.3:c.956C>T	p.Thr319Met	p.T319M	ENST00000289081	NM_000136.2	319	aCg/aTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229599	98229599	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	54	379	0	ENST00000331920.6:c.2359G>T	p.Glu787Ter	p.E787*	ENST00000331920	NM_000264.3	787	Gaa/Taa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891350	101891350	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	50	493	0	ENST00000374994.4:c.311A>G	p.Asp104Gly	p.D104G	ENST00000374994	NM_004612.2	104	gAc/gGc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128432165	128432165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	45	352	0	ENST00000265960.3:c.281G>A	p.Arg94Gln	p.R94Q	ENST00000265960	NM_001006617.1	94	cGa/cAa																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128434778	128434778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	123	660	0	ENST00000265960.3:c.76A>G	p.Met26Val	p.M26V	ENST00000265960	NM_001006617.1	26	Atg/Gtg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317422	1317422	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	76	576	0				ENST00000381566																																																																																	
CRLF2	64109	MSKCC	GRCh37	X	1321286	1321286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	65	565	1	ENST00000381566.1:c.469G>A	p.Asp157Asn	p.D157N	ENST00000381566		157	Gac/Aac																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15822267	15822267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	16	119	0	ENST00000307771.7:c.346A>G	p.Arg116Gly	p.R116G	ENST00000307771	NM_005089.3	116	Agg/Ggg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932914	39932914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147493277		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	190	391	0	ENST00000378444.4:c.1685C>T	p.Ser562Leu	p.S562L	ENST00000378444	NM_001123385.1	562	tCg/tTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44910961	44910961	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	47	116	0	ENST00000377967.4:c.662A>G	p.Tyr221Cys	p.Y221C	ENST00000377967	NM_021140.2	221	tAt/tGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938470	44938470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	29	235	0	ENST00000377967.4:c.3018G>T	p.Gln1006His	p.Q1006H	ENST00000377967	NM_021140.2	1006	caG/caT																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223727	53223727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	147	595	0	ENST00000375401.3:c.3632G>T	p.Gly1211Val	p.G1211V	ENST00000375401	NM_004187.3	1211	gGg/gTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410486	63410486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	74	409	1	ENST00000330258.3:c.2681G>A	p.Arg894His	p.R894H	ENST00000330258	NM_152424.3	894	cGc/cAc																																																																														
AR	367	MSKCC	GRCh37	X	66765797	66765797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	141	583	1	ENST00000374690.3:c.809C>T	p.Ala270Val	p.A270V	ENST00000374690	NM_000044.3	270	gCc/gTc																																																																														
AR	367	MSKCC	GRCh37	X	66765866	66765866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	150	606	0	ENST00000374690.3:c.878C>A	p.Ser293Tyr	p.S293Y	ENST00000374690	NM_000044.3	293	tCt/tAt																																																																														
AR	367	MSKCC	GRCh37	X	66931388	66931388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	84	335	0	ENST00000374690.3:c.2030T>C	p.Val677Ala	p.V677A	ENST00000374690	NM_000044.3	677	gTc/gCc																																																																														
AR	367	MSKCC	GRCh37	X	66943614	66943614	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	35	329	1	ENST00000374690.3:c.2694G>T	p.Glu898Asp	p.E898D	ENST00000374690	NM_000044.3	898	gaG/gaT																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	193	335	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937850	76937850	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs138256318		P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	61	282	0	ENST00000373344.5:c.2898G>T	p.Glu966Asp	p.E966D	ENST00000373344	NM_000489.3	966	gaG/gaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76937984	76937984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	55	292	0	ENST00000373344.5:c.2764G>A	p.Asp922Asn	p.D922N	ENST00000373344	NM_000489.3	922	Gat/Aat																																																																														
BTK	695	MSKCC	GRCh37	X	100611795	100611795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	151	275	0	ENST00000308731.7:c.1326C>A	p.Phe442Leu	p.F442L	ENST00000308731	NM_000061.2	442	ttC/ttA																																																																														
XIAP	331	MSKCC	GRCh37	X	123026618	123026618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	70	164	0	ENST00000355640.3:c.1094G>T	p.Arg365Ile	p.R365I	ENST00000355640		365	aGa/aTa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964398	70964398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	45	509	0	ENST00000276594.2:c.1630G>A	p.Asp544Asn	p.D544N	ENST00000276594	NM_024504.3	544	Gat/Aat																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366939	15366939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	125	621	1	ENST00000263377.2:c.1687delA	p.Ser563AlafsTer21	p.S563Afs*21	ENST00000263377	NM_058243.2	563	Agc/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	61	287	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256769	19256769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	140	672	1	ENST00000162023.5:c.944del	p.Pro315GlnfsTer?	p.P315Qfs*?	ENST00000162023		315	cCa/ca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521298	187521299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	123	594	0	ENST00000441802.2:c.11856dupT	p.Gly3953TrpfsTer19	p.G3953Wfs*19	ENST00000441802	NM_005245.3	3952	-/T																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	154	791	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	61	305	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	237	933	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099312	157099312	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	70	443	1	ENST00000346085.5:c.249G>C	p.Gln83His	p.Q83H	ENST00000346085	NM_020732.3	83	caG/caC																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	230	1025	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262079	10262079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	135	567	0	ENST00000340748.4:c.2212G>A	p.Val738Ile	p.V738I	ENST00000340748		738	Gtc/Atc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39644789	39644789	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	59	229	0	ENST00000262039.4:c.2522del	p.Lys841ArgfsTer8	p.K841Rfs*8	ENST00000262039	NM_002647.2	840	Aaa/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	83	374	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	103	500	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	145	589	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	86	327	2	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	95	461	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	176	661	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
SRC	6714	MSKCC	GRCh37	20	36012773	36012773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	79	246	0	ENST00000358208.4:c.217G>A	p.Val73Ile	p.V73I	ENST00000358208		73	Gtc/Atc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954261	32954261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	91	439	2	ENST00000380152.3:c.9235G>A	p.Val3079Ile	p.V3079I	ENST00000380152		3079	Gtt/Att																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	140	982	2	ENST00000346208.3:c.708dupC	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																																																														
POLE	5426	MSKCC	GRCh37	12	133214630	133214630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	103	533	0	ENST00000320574.5:c.5648C>T	p.Ala1883Val	p.A1883V	ENST00000320574	NM_006231.2	1883	gCc/gTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40979319	40979319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	117	623	3	ENST00000373198.4:c.1814C>T	p.Thr605Met	p.T605M	ENST00000373198	NM_133170.3	605	aCg/aTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435293	110435295	+	inframe_deletion	In_Frame_Del	DEL	CGG	CGG	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	66	266	0	ENST00000375856.3:c.3106_3108del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1036	CCG/-																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	193	809	9	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629772	187629772	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	129	545	2	ENST00000441802.2:c.1210A>G	p.Ser404Gly	p.S404G	ENST00000441802	NM_005245.3	404	Agt/Ggt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629770	187629770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	126	536	0	ENST00000441802.2:c.1212del	p.Ser404ArgfsTer10	p.S404Rfs*10	ENST00000441802	NM_005245.3	404	agT/ag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047959	180047959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	226	1018	0	ENST00000261937.6:c.2216G>A	p.Arg739His	p.R739H	ENST00000261937	NM_182925.4	739	cGc/cAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259464	89259464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	106	481	1	ENST00000336596.2:c.608C>A	p.Pro203Gln	p.P203Q	ENST00000336596	NM_005233.5	203	cCa/cAa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11984839	11984839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	85	347	1	ENST00000353533.5:c.385G>A	p.Ala129Thr	p.A129T	ENST00000353533	NM_003010.3	129	Gca/Aca																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5239008	5239008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138765579		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	189	867	0	ENST00000357368.4:c.1771G>A	p.Ala591Thr	p.A591T	ENST00000357368	NM_002850.3	591	Gcc/Acc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125634	47125634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	108	340	1	ENST00000409792.3:c.5636G>A	p.Arg1879His	p.R1879H	ENST00000409792	NM_014159.6	1879	cGc/cAc																																																																														
BLM	641	MSKCC	GRCh37	15	91333927	91333927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	116	485	1	ENST00000355112.3:c.2872G>A	p.Val958Met	p.V958M	ENST00000355112	NM_000057.2	958	Gtg/Atg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612377	1612377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	254	1016	3	ENST00000344749.5:c.1642C>T	p.Arg548Cys	p.R548C	ENST00000344749	NM_001136139.2	548	Cgc/Tgc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845397	42845397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	167	787	0	ENST00000398585.3:c.865C>T	p.Arg289Cys	p.R289C	ENST00000398585	NM_001135099.1	289	Cgc/Tgc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	169	838	5	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370754	55370754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	136	564	0	ENST00000297316.4:c.56C>T	p.Ala19Val	p.A19V	ENST00000297316	NM_022454.3	19	gCg/gTg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128246746	128246746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	118	591	0	ENST00000265960.3:c.1183C>T	p.Arg395Ter	p.R395*	ENST00000265960	NM_001006617.1	395	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	269	1106	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324576	31324576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	91	860	1	ENST00000412585.2:c.232C>T	p.Gln78Ter	p.Q78*	ENST00000412585	NM_005514.6	78	Cag/Tag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353965	15353965	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	64	269	0	ENST00000263377.2:c.2915A>T	p.Gln972Leu	p.Q972L	ENST00000263377	NM_058243.2	972	cAg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229252	36229252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	201	755	0	ENST00000222270.7:c.7942G>A	p.Ala2648Thr	p.A2648T	ENST00000222270	NM_014727.1	2648	Gcc/Acc																																																																														
TP63	8626	MSKCC	GRCh37	3	189587160	189587160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	80	342	0	ENST00000264731.3:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000264731	NM_003722.4	393	Cga/Tga																																																																														
TCF3	6929	MSKCC	GRCh37	19	1627417	1627417	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201841190		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	60	867	0	ENST00000344749.5:c.307G>A	p.Gly103Ser	p.G103S	ENST00000344749	NM_001136139.2	103	Ggt/Agt																																																																														
ATR	545	MSKCC	GRCh37	3	142224106	142224106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	103	324	0	ENST00000350721.4:c.5071G>A	p.Gly1691Arg	p.G1691R	ENST00000350721	NM_001184.3	1691	Gga/Aga																																																																														
E2F3	1871	MSKCC	GRCh37	6	20486919	20486919	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	51	236	0	ENST00000346618.3:c.885-1C>T		p.X295_splice	ENST00000346618	NM_001949.4	295																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845958	151845959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	136	560	0	ENST00000262189.6:c.13053dupA	p.Trp4352MetfsTer17	p.W4352Mfs*17	ENST00000262189	NM_170606.2	4351	-/A																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138934	64138934	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	85	434	0	ENST00000334205.4:c.2305del	p.Leu769CysfsTer15	p.L769Cfs*15	ENST00000334205	NM_003942.2	767	ggC/gg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436060	49436060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	152	699	1	ENST00000301067.7:c.5921C>T	p.Thr1974Met	p.T1974M	ENST00000301067	NM_003482.3	1974	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440135	49440136	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	149	653	0	ENST00000301067.7:c.4490_4491del	p.His1497LeufsTer30	p.H1497Lfs*30	ENST00000301067	NM_003482.3	1497	cAC/c																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246416	46246416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140500006		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	65	285	0	ENST00000334344.6:c.4510C>T	p.Arg1504Trp	p.R1504W	ENST00000334344	NM_152641.2	1504	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175015	112175015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	58	159	0	ENST00000257430.4:c.3724C>T	p.Gln1242Ter	p.Q1242*	ENST00000257430	NM_000038.5	1242	Cag/Tag																																																																														
AKT2	208	MSKCC	GRCh37	19	40744850	40744850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	150	804	0	ENST00000392038.2:c.670C>T	p.Arg224Cys	p.R224C	ENST00000392038	NM_001626.4	224	Cgc/Tgc																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519422	137519422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	69	261	0	ENST00000367739.4:c.1216G>A	p.Asp406Asn	p.D406N	ENST00000367739	NM_000416.2	406	Gat/Aat																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858561	57858561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	191	795	3	ENST00000228682.2:c.299G>A	p.Arg100His	p.R100H	ENST00000228682	NM_005269.2	100	cGc/cAc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224088	39224088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	134	541	0	ENST00000402219.2:c.3056G>A	p.Arg1019Gln	p.R1019Q	ENST00000402219	NM_005633.3	1019	cGa/cAa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303270	15303270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	188	1047	0	ENST00000263388.2:c.258del	p.Cys87ValfsTer149	p.C87Vfs*149	ENST00000263388	NM_000435.2	86	ccC/cc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17947980	17947980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	231	933	0	ENST00000458235.1:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000458235	NM_000215.3	582	Cgg/Tgg																																																																														
RET	5979	MSKCC	GRCh37	10	43606829	43606829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	228	1000	1	ENST00000355710.3:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000355710	NM_020975.4	480	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116371770	116371770	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	93	347	0	ENST00000397752.3:c.1249C>T	p.Arg417Ter	p.R417*	ENST00000397752	NM_000245.2	417	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41573002	41573002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	236	848	0	ENST00000263253.7:c.5287C>T	p.Arg1763Trp	p.R1763W	ENST00000263253	NM_001429.3	1763	Cgg/Tgg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073432	8073432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	140	409	0	ENST00000377482.5:c.1227A>T	p.Lys409Asn	p.K409N	ENST00000377482	NM_018948.3	409	aaA/aaT																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784401	9784401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	157	631	0	ENST00000377346.4:c.2786G>A	p.Arg929His	p.R929H	ENST00000377346	NM_005026.3	929	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089546	27089547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	204	708	0	ENST00000324856.7:c.2503dup	p.Met835AsnfsTer37	p.M835Nfs*37	ENST00000324856	NM_006015.4	834	-/A																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798262	45798262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	198	672	0	ENST00000372115.3:c.632C>T	p.Ser211Phe	p.S211F	ENST00000372115	NM_001048171.1	211	tCt/tTt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65303781	65303781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	126	401	0	ENST00000342505.4:c.2974G>A	p.Asp992Asn	p.D992N	ENST00000342505	NM_002227.2	992	Gac/Aac																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156837964	156837964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	240	1056	1	ENST00000524377.1:c.497G>A	p.Gly166Glu	p.G166E	ENST00000524377	NM_002529.3	166	gGa/gAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392613	118392613	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	99	397	0	ENST00000534358.1:c.11645G>A	p.Gly3882Asp	p.G3882D	ENST00000534358	NM_005933.3	3882	gGc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433721	49433721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	259	1089	1	ENST00000301067.7:c.7832G>A	p.Arg2611His	p.R2611H	ENST00000301067	NM_003482.3	2611	cGc/cAc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518693	103518693	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142438319		P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	67	317	1	ENST00000355739.4:c.2281G>A	p.Ala761Thr	p.A761T	ENST00000355739	NM_000123.3	761	Gct/Act																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061711	38061711	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	82	414	0	ENST00000250448.2:c.278T>C	p.Met93Thr	p.M93T	ENST00000250448	NM_004496.3	93	aTg/aCg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88428929	88428929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	41	291	0	ENST00000360948.2:c.2171G>A	p.Cys724Tyr	p.C724Y	ENST00000360948	NM_001012338.2	724	tGt/tAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992246	72992246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	205	921	0	ENST00000268489.5:c.1799C>T	p.Ala600Val	p.A600V	ENST00000268489	NM_006885.3	600	gCc/gTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993363	72993363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	195	848	0	ENST00000268489.5:c.682C>A	p.Leu228Met	p.L228M	ENST00000268489	NM_006885.3	228	Ctg/Atg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89815164	89815164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	146	712	0	ENST00000389301.3:c.3251G>A	p.Arg1084His	p.R1084H	ENST00000389301	NM_000135.2	1084	cGc/cAc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441470	40441470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	324	815	0	ENST00000345506.4:c.41C>T	p.Ala14Val	p.A14V	ENST00000345506	NM_003152.3	14	gCg/gTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216499	2216499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	243	1003	0	ENST00000398665.3:c.2143G>A	p.Gly715Ser	p.G715S	ENST00000398665	NM_032482.2	715	Ggc/Agc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350545	15350545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	206	956	1	ENST00000263377.2:c.3370C>T	p.Pro1124Ser	p.P1124S	ENST00000263377	NM_058243.2	1124	Ccc/Tcc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909688	50909688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	210	951	0	ENST00000440232.2:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000440232	NM_002691.3	470	Cgc/Tgc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50917120	50917120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	213	1020	0	ENST00000440232.2:c.2372G>A	p.Arg791Gln	p.R791Q	ENST00000440232	NM_002691.3	791	cGg/cAg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082520	16082520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	190	815	1	ENST00000281043.3:c.334C>T	p.Leu112Phe	p.L112F	ENST00000281043	NM_005378.4	112	Ctc/Ttc																																																																														
ALK	238	MSKCC	GRCh37	2	30143024	30143024	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	198	1033	0	ENST00000389048.3:c.502T>C	p.Phe168Leu	p.F168L	ENST00000389048	NM_004304.4	168	Ttc/Ctc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61725902	61725902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	103	351	0	ENST00000401558.2:c.665T>C	p.Val222Ala	p.V222A	ENST00000401558	NM_003400.3	222	gTa/gCa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209116275	209116275	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	43	210	0	ENST00000345146.2:c.1A>G	p.Met1?	p.M1?	ENST00000345146	NM_005896.2	1	Atg/Gtg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376805	31376805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	120	580	0	ENST00000328111.2:c.800G>A	p.Gly267Asp	p.G267D	ENST00000328111	NM_006892.3	267	gGc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980795	40980795	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	120	598	0	ENST00000373198.4:c.1691T>C	p.Phe564Ser	p.F564S	ENST00000373198	NM_133170.3	564	tTc/tCc																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181887	38181887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	86	323	0	ENST00000396334.3:c.511C>T	p.Pro171Ser	p.P171S	ENST00000396334	NM_002468.4	171	Cct/Tct																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026841	71026841	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	70	229	0	ENST00000318789.4:c.1381A>G	p.Asn461Asp	p.N461D	ENST00000318789	NM_032682.5	461	Aac/Gac																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825345	134825345	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	111	548	0	ENST00000398015.3:c.864del	p.Ser289ProfsTer66	p.S289Pfs*66	ENST00000398015	NM_004441.4	287	tgC/tg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431041	181431041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	162	848	0	ENST00000325404.1:c.893A>G	p.Tyr298Cys	p.Y298C	ENST00000325404	NM_003106.3	298	tAc/tGc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356306	66356306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	116	442	0	ENST00000273854.3:c.1191G>T	p.Lys397Asn	p.K397N	ENST00000273854	NM_004439.5	397	aaG/aaT																																																																														
TET2	54790	MSKCC	GRCh37	4	106155392	106155392	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	94	383	0	ENST00000380013.4:c.293T>C	p.Val98Ala	p.V98A	ENST00000380013	NM_001127208.2	98	gTt/gCt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627206	86627206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	64	237	0	ENST00000274376.6:c.581G>A	p.Arg194His	p.R194H	ENST00000274376	NM_002890.2	194	cGc/cAc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86679535	86679535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	81	311	0	ENST00000274376.6:c.2696T>C	p.Phe899Ser	p.F899S	ENST00000274376	NM_002890.2	899	tTt/tCt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562840	176562840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	130	444	0	ENST00000439151.2:c.736G>A	p.Gly246Ser	p.G246S	ENST00000439151	NM_022455.4	246	Ggc/Agc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721468	176721468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	155	647	0	ENST00000439151.2:c.7099G>A	p.Ala2367Thr	p.A2367T	ENST00000439151	NM_022455.4	2367	Gct/Act																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680932	30680932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	161	721	0	ENST00000376406.3:c.787C>T	p.Pro263Ser	p.P263S	ENST00000376406	NM_014641.2	263	Cct/Tct																																																																														
SESN1	27244	MSKCC	GRCh37	6	109319951	109319952	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	117	434	0	ENST00000436639.2:c.736_737del	p.Leu246LysfsTer3	p.L246Kfs*3	ENST00000436639	NM_014454.2	246	TTa/a																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942878	68942878	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	109	568	0	ENST00000288368.4:c.690C>A	p.His230Gln	p.H230Q	ENST00000288368	NM_024870.2	230	caC/caA																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268745	98268745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	144	538	2	ENST00000331920.6:c.338C>T	p.Ala113Val	p.A113V	ENST00000331920	NM_000264.3	113	gCg/gTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135802599	135802599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	69	245	0	ENST00000298552.3:c.199C>T	p.Pro67Ser	p.P67S	ENST00000298552	NM_001162426.1	67	Cca/Tca																																																																														
MED12	9968	MSKCC	GRCh37	X	70349653	70349653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	181	634	0	ENST00000374080.3:c.3815C>T	p.Thr1272Ile	p.T1272I	ENST00000374080		1272	aCa/aTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043504-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			372	97	314	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0043504-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			417	247	724	0	ENST00000269305.4:c.672+1G>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412506	63412506	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043504-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			453	262	837	0	ENST00000330258.3:c.661T>A	p.Phe221Ile	p.F221I	ENST00000330258	NM_152424.3	221	Ttc/Atc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354065	15354065	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043504-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			770	254	758	1	ENST00000263377.2:c.2815C>T	p.Gln939Ter	p.Q939*	ENST00000263377	NM_058243.2	939	Cag/Tag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437418	110437419	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGT			P-0046179-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	85	504	0	ENST00000375856.3:c.980_982dup	p.His327dup	p.H327dup	ENST00000375856	NM_003749.2	327	ctg/cACCtg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986591	36986601	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGGCGGCGT	GCTGGCGGCGT	-			P-0046179-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			640	70	496	0	ENST00000354822.5:c.1088_1098del	p.His363ProfsTer72	p.H363Pfs*72	ENST00000354822	NM_001079668.2	363	cACGCCGCCAGC/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			693	159	699	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972614	32972614	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	50	322	0	ENST00000380152.3:c.9964A>T	p.Met3322Leu	p.M3322L	ENST00000380152		3322	Atg/Ttg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029321	16029452	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCCTATATCTACAAAAATAAAAATAAAATAAAAATAAACATTTAACTTATTATATAACTAATTATTTAACTCACTTGGAGTCTTCTTTTTCATCTTTTTCCTCTTCATCTTTCTTTTCTTCTTCTTTTTTT	TCCCTATATCTACAAAAATAAAAATAAAATAAAAATAAACATTTAACTTATTATATAACTAATTATTTAACTCACTTGGAGTCTTCTTTTTCATCTTTTTCCTCTTCATCTTTCTTTTCTTCTTCTTTTTTT	-			P-0047008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			67	31	73	0	ENST00000268712.3:c.1578_1634+75del		p.X526_splice	ENST00000268712	NM_006311.3	526																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588966	67588966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	38	194	0	ENST00000274335.5:c.1057G>C	p.Gly353Arg	p.G353R	ENST00000274335		353	Ggg/Cgg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636784	176636784	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	72	385	0	ENST00000439151.2:c.1384A>G	p.Asn462Asp	p.N462D	ENST00000439151	NM_022455.4	462	Aat/Gat																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468096	50468096	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	138	590	0	ENST00000331340.3:c.1331A>T	p.Asn444Ile	p.N444I	ENST00000331340	NM_006060.4	444	aAc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047029-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	150	756	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0047029-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	123	602	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980435	7980435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047029-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	110	653	0	ENST00000319144.4:c.1148C>T	p.Thr383Met	p.T383M	ENST00000319144	NM_001139.2	383	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0047029-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	1051	515	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
AR	367	MSKCC	GRCh37	X	66765097	66765097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047029-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	85	607	0	ENST00000374690.3:c.109C>A	p.Pro37Thr	p.P37T	ENST00000374690	NM_000044.3	37	Ccg/Acg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120471800	120471800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	130	331	0	ENST00000256646.2:c.3691C>T	p.Arg1231Trp	p.R1231W	ENST00000256646	NM_024408.3	1231	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	182	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	58	218	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508064	106508064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	24	178	0	ENST00000359195.3:c.58C>T	p.Arg20Cys	p.R20C	ENST00000359195	NM_002649.2	20	Cgc/Tgc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	132	261	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	77	320	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	135	146	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006138	22006138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	229	759	0	ENST00000276925.6:c.265C>T	p.Arg89Trp	p.R89W	ENST00000276925	NM_004936.3	89	Cgg/Tgg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128199974	128199974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	218	672	0	ENST00000341105.2:c.1331C>T	p.Pro444Leu	p.P444L	ENST00000341105	NM_032638.4	444	cCg/cTg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663346	67663346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	88	226	1	ENST00000264010.4:c.1747G>A	p.Val583Ile	p.V583I	ENST00000264010	NM_006565.3	583	Gta/Ata																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120517	70120518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	259	675	0	ENST00000245479.2:c.1520dup	p.Arg508SerfsTer70	p.R508Sfs*70	ENST00000245479	NM_000346.3	507	act/aCct																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371747	45371747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	22	258	0	ENST00000262160.6:c.1244G>A	p.Arg415Lys	p.R415K	ENST00000262160	NM_005901.5	415	aGa/aAa																																																																														
FAM175A	0	MSKCC	GRCh37	4	84383804	84383804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	90	394	0	ENST00000321945.7:c.1048G>C	p.Asp350His	p.D350H	ENST00000321945	NM_139076.2	350	Gac/Cac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247175	153247175	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	86	192	0	ENST00000281708.4:c.1627A>T	p.Arg543Ter	p.R543*	ENST00000281708	NM_033632.3	543	Aga/Tga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265322	152265322	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	88	257	0	ENST00000206249.3:c.775C>T	p.Arg259Ter	p.R259*	ENST00000206249	NM_000125.3	259	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	529	619	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28959044	28959044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	95	296	0	ENST00000282397.4:c.2094C>A	p.Asn698Lys	p.N698K	ENST00000282397	NM_002019.4	698	aaC/aaA																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423519	88423519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	304	559	0	ENST00000360948.2:c.2316C>A	p.Phe772Leu	p.F772L	ENST00000360948	NM_001012338.2	772	ttC/ttA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47127717	47127717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	37	439	0	ENST00000409792.3:c.5365G>A	p.Gly1789Ser	p.G1789S	ENST00000409792	NM_014159.6	1789	Ggc/Agc																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2493143	2493143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	195	661	0	ENST00000355716.4:c.583G>A	p.Gly195Arg	p.G195R	ENST00000355716	NM_003820.2	195	Ggg/Agg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435110	49435110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	570	763	0	ENST00000301067.7:c.6443G>T	p.Gly2148Val	p.G2148V	ENST00000301067	NM_003482.3	2148	gGc/gTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964103	28964103	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	112	372	2	ENST00000282397.4:c.1799T>C	p.Met600Thr	p.M600T	ENST00000282397	NM_002019.4	600	aTg/aCg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335619	73335619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	49	194	0	ENST00000377767.4:c.2552A>G	p.Tyr851Cys	p.Y851C	ENST00000377767	NM_014953.3	851	tAt/tGt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251019	99251019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	191	552	0	ENST00000268035.6:c.323G>C	p.Gly108Ala	p.G108A	ENST00000268035	NM_000875.3	108	gGc/gCc																																																																														
CBFB	865	MSKCC	GRCh37	16	67100642	67100642	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	70	489	0	ENST00000412916.2:c.340A>T	p.Ile114Phe	p.I114F	ENST00000412916		114	Att/Ttt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16068448	16068448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	16	111	0	ENST00000268712.3:c.463G>T	p.Ala155Ser	p.A155S	ENST00000268712	NM_006311.3	155	Gct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29653001	29653001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	260	394	0	ENST00000358273.4:c.4999C>A	p.Pro1667Thr	p.P1667T	ENST00000358273	NM_001042492.2	1667	Cct/Act																																																																														
ALK	238	MSKCC	GRCh37	2	29754910	29754910	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	172	526	0	ENST00000389048.3:c.1025G>C	p.Ser342Thr	p.S342T	ENST00000389048	NM_004304.4	342	aGt/aCt																																																																														
EP300	2033	MSKCC	GRCh37	22	41566504	41566504	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	112	294	0	ENST00000263253.7:c.4381A>C	p.Lys1461Gln	p.K1461Q	ENST00000263253	NM_001429.3	1461	Aag/Cag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356113	66356113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	280	428	0	ENST00000273854.3:c.1384G>T	p.Val462Leu	p.V462L	ENST00000273854	NM_004439.5	462	Gta/Tta																																																																														
APC	324	MSKCC	GRCh37	5	112173376	112173377	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	124	268	0	ENST00000257430.4:c.2085_2086delinsTT	p.Gln695_Glu696delinsHisTer	p.Q695_E696delinsH*	ENST00000257430	NM_000038.5	695	caGGaa/caTTaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859414	151859414	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	128	411	0	ENST00000262189.6:c.11248del	p.Ala3750ProfsTer28	p.A3750Pfs*28	ENST00000262189	NM_170606.2	3750	Gcc/cc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518082	8518082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	242	398	0	ENST00000356435.5:c.1309C>G	p.Gln437Glu	p.Q437E	ENST00000356435		437	Cag/Gag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185070	123185070	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	98	183	0	ENST00000218089.9:c.1116+1G>A		p.X372_splice	ENST00000218089	NM_001042749.1	372																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	32	322	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	61	295	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426279	49426279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	49	934	0	ENST00000301067.7:c.12209C>T	p.Ser4070Phe	p.S4070F	ENST00000301067	NM_003482.3	4070	tCt/tTt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206653811	206653811	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	49	704	0	ENST00000367120.3:c.1362C>A	p.Cys454Ter	p.C454*	ENST00000367120	NM_014002.3	454	tgC/tgA																																																																														
MGA	23269	MSKCC	GRCh37	15	41961444	41961444	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	35	442	0	ENST00000219905.7:c.352A>G	p.Asn118Asp	p.N118D	ENST00000219905	NM_001164273.1	118	Aat/Gat																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126567	2126567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	53	676	0	ENST00000219476.3:c.2818C>T	p.Leu940Phe	p.L940F	ENST00000219476	NM_000548.3	940	Ctc/Ttc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557245	187557245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	36	488	0	ENST00000441802.2:c.4117G>A	p.Val1373Ile	p.V1373I	ENST00000441802	NM_005245.3	1373	Gtt/Att																																																																														
KIT	3815	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	11	267	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0048254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	457	548	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	81	210	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947865	178947865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	26	251	0	ENST00000263967.3:c.2740G>A	p.Gly914Arg	p.G914R	ENST00000263967	NM_006218.2	914	Gga/Aga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	149	372	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	46	472	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123760	11123760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	39	514	0	ENST00000344626.4:c.2410G>A	p.Gly804Arg	p.G804R	ENST00000344626	NM_003072.3	804	Ggg/Agg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097621	27097622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	138	371	0	ENST00000324856.7:c.3216dup	p.Trp1073MetfsTer32	p.W1073Mfs*32	ENST00000324856	NM_006015.4	1070	-/A																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916531	39916531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	52	635	0	ENST00000378444.4:c.4472A>G	p.Asn1491Ser	p.N1491S	ENST00000378444	NM_001123385.1	1491	aAt/aGt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522601	176522601	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	277	900	0	ENST00000292408.4:c.1703delC	p.Pro568GlnfsTer53	p.P568Qfs*53	ENST00000292408	NM_213647.1	566	cgC/cg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	329	894	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	92	366	1	ENST00000263377.2:c.3061delC	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274794	123274794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	164	396	0	ENST00000358487.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000358487	NM_000141.4	375	tAc/tGc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772951	135772951	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	136	354	1	ENST00000298552.3:c.2672del	p.Asn891ThrfsTer40	p.N891Tfs*40	ENST00000298552	NM_001162426.1	891	aAc/ac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	149	369	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	251	883	1	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653807	89653807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	139	267	0	ENST00000371953.3:c.105G>A	p.Met35Ile	p.M35I	ENST00000371953	NM_000314.4	35	atG/atA																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448328	56448328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199909371		P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	54	730	0	ENST00000407977.2:c.319G>A	p.Val107Ile	p.V107I	ENST00000407977		107	Gtc/Atc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663356	67663356	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	31	254	0	ENST00000264010.4:c.1760del	p.Asn587MetfsTer44	p.N587Mfs*44	ENST00000264010	NM_006565.3	586	gAa/ga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120460319	120460319	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	204	461	1	ENST00000256646.2:c.5996del	p.Asn1999MetfsTer32	p.N1999Mfs*32	ENST00000256646	NM_024408.3	1999	aAt/at																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136120	11136120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	51	647	0	ENST00000344626.4:c.3104T>C	p.Leu1035Pro	p.L1035P	ENST00000344626	NM_003072.3	1035	cTg/cCg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193094309	193094309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	43	341	0	ENST00000367435.3:c.199G>A	p.Val67Met	p.V67M	ENST00000367435	NM_024529.4	67	Gtg/Atg																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588241	69588241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	148	440	0	ENST00000168712.1:c.457G>A	p.Asp153Asn	p.D153N	ENST00000168712	NM_002007.2	153	Gat/Aat																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368387	225368388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	78	223	1	ENST00000264414.4:c.1358dupA	p.Asn453LysfsTer5	p.N453Kfs*5	ENST00000264414	NM_003590.4	453	aac/aaAc																																																																														
AKT2	208	MSKCC	GRCh37	19	40761117	40761117	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	65	683	0	ENST00000392038.2:c.235C>T	p.Gln79Ter	p.Q79*	ENST00000392038	NM_001626.4	79	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	63	821	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	329	756	3	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53250047	53250047	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	65	582	2	ENST00000375401.3:c.202del	p.Arg68GlufsTer5	p.R68Efs*5	ENST00000375401	NM_004187.3	68	Cga/ga																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266128	198266128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	148	299	2	ENST00000335508.6:c.2492G>A	p.Arg831Gln	p.R831Q	ENST00000335508	NM_012433.2	831	cGa/cAa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028784	47028784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	280	745	0	ENST00000329236.7:c.88C>T	p.Arg30Cys	p.R30C	ENST00000329236	NM_001204466.1	30	Cgc/Tgc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243222	123243223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	272	612	0	ENST00000358487.5:c.2290dup	p.Thr764AsnfsTer4	p.T764Nfs*4	ENST00000358487	NM_000141.4	764	aca/aAca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390715	118390715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	27	271	0	ENST00000534358.1:c.11365C>T	p.Arg3789Cys	p.R3789C	ENST00000534358	NM_005933.3	3789	Cgt/Tgt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347627	89347627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	46	691	1	ENST00000301030.4:c.5323G>A	p.Ala1775Thr	p.A1775T	ENST00000301030	NM_001256183.1	1775	Gcc/Acc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40485715	40485715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	37	482	0	ENST00000264657.5:c.1025G>A	p.Gly342Asp	p.G342D	ENST00000264657	NM_139276.2	342	gGc/gAc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52613079	52613079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	160	260	0	ENST00000394830.3:c.3449G>A	p.Arg1150His	p.R1150H	ENST00000394830	NM_018313.4	1150	cGt/cAt																																																																														
TP63	8626	MSKCC	GRCh37	3	189526312	189526312	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	40	388	0	ENST00000264731.3:c.576G>A	p.Trp192Ter	p.W192*	ENST00000264731	NM_003722.4	192	tgG/tgA																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073280	8073280	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	121	256	0	ENST00000377482.5:c.1379T>C	p.Val460Ala	p.V460A	ENST00000377482	NM_018948.3	460	gTt/gCt																																																																														
STK40	83931	MSKCC	GRCh37	1	36807388	36807388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	315	781	1	ENST00000373129.3:c.1276G>A	p.Ala426Thr	p.A426T	ENST00000373129	NM_032017.1	426	Gcc/Acc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429946	78429946	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	144	311	0	ENST00000370768.2:c.933del	p.Phe311LeufsTer12	p.F311Lfs*12	ENST00000370768	NM_003902.3	311	ttT/tt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120496190	120496190	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	197	427	0	ENST00000256646.2:c.2341T>C	p.Cys781Arg	p.C781R	ENST00000256646	NM_024408.3	781	Tgt/Cgt																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551951	150551951	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	187	498	0	ENST00000369026.2:c.56C>G	p.Ala19Gly	p.A19G	ENST00000369026	NM_021960.4	19	gCc/gGc																																																																														
CCND1	595	MSKCC	GRCh37	11	69456170	69456170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	329	682	0	ENST00000227507.2:c.89C>T	p.Ala30Val	p.A30V	ENST00000227507	NM_053056.2	30	gCc/gTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432368	432368	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	93	165	0	ENST00000399788.2:c.2155C>G	p.Arg719Gly	p.R719G	ENST00000399788	NM_001042603.1	719	Cgc/Ggc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434525	49434525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	186	776	1	ENST00000301067.7:c.7028C>T	p.Pro2343Leu	p.P2343L	ENST00000301067	NM_003482.3	2343	cCg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435930	49435930	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	258	778	0	ENST00000301067.7:c.6051del	p.Ile2018SerfsTer29	p.I2018Sfs*29	ENST00000301067	NM_003482.3	2017	acC/ac																																																																														
SETD8	0	MSKCC	GRCh37	12	123873997	123873997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	29	57	0	ENST00000330479.4:c.28C>T	p.Pro10Ser	p.P10S	ENST00000330479	NM_020382.3	10	Ccc/Tcc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435250	110435250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	166	364	0	ENST00000375856.3:c.3151G>A	p.Ala1051Thr	p.A1051T	ENST00000375856	NM_003749.2	1051	Gcc/Acc																																																																														
NF1	4763	MSKCC	GRCh37	17	29586087	29586089	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	23	298	0	ENST00000358273.4:c.4375_4377del	p.Glu1459del	p.E1459del	ENST00000358273	NM_001042492.2	1457	aAAGaa/aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296118	15296118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	79	834	0	ENST00000263388.2:c.2246G>A	p.Cys749Tyr	p.C749Y	ENST00000263388	NM_000435.2	749	tGc/tAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918181	50918181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	58	911	0	ENST00000440232.2:c.2498G>A	p.Arg833His	p.R833H	ENST00000440232	NM_002691.3	833	cGc/cAc																																																																														
ALK	238	MSKCC	GRCh37	2	29462644	29462644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	56	722	3	ENST00000389048.3:c.2257C>T	p.Arg753Trp	p.R753W	ENST00000389048	NM_004304.4	753	Cgg/Tgg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190742124	190742124	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	123	236	0	ENST00000441310.2:c.2766del	p.His923IlefsTer3	p.H923Ifs*3	ENST00000441310	NM_000534.4	921	Ttt/tt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191217	185191217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	27	470	0	ENST00000265026.3:c.2098T>C	p.Ser700Pro	p.S700P	ENST00000265026	NM_004721.4	700	Tcc/Ccc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187527274	187527274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	35	486	0	ENST00000441802.2:c.10300A>G	p.Asn3434Asp	p.N3434D	ENST00000441802	NM_005245.3	3434	Aat/Gat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31423000	31423000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	30	447	0	ENST00000344624.3:c.3313C>T	p.Gln1105Ter	p.Q1105*	ENST00000344624		1105	Caa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672384	86672384	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	16	140	0	ENST00000274376.6:c.2184+2T>C		p.X728_splice	ENST00000274376	NM_002890.2	728																																																																															
APC	324	MSKCC	GRCh37	5	112175114	112175114	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	62	156	0	ENST00000257430.4:c.3823A>G	p.Ser1275Gly	p.S1275G	ENST00000257430	NM_000038.5	1275	Agt/Ggt																																																																														
ABL1	25	MSKCC	GRCh37	9	133730223	133730223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	180	396	0	ENST00000318560.5:c.289G>A	p.Gly97Arg	p.G97R	ENST00000318560	NM_005157.4	97	Ggg/Agg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786025	135786025	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	68	668	0	ENST00000298552.3:c.1196del	p.Pro399HisfsTer41	p.P399Hfs*41	ENST00000298552	NM_001162426.1	399	cCa/ca																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798753	135798755	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	92	152	0	ENST00000298552.3:c.488_490del	p.Ser163del	p.S163del	ENST00000298552	NM_001162426.1	163	tCATgg/tgg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224137	53224137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	57	776	0	ENST00000375401.3:c.3414G>T	p.Gln1138His	p.Q1138H	ENST00000375401	NM_004187.3	1138	caG/caT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	55	299	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	58	386	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	168	348	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	43	256	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	273	698	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	61	744	2	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78681708	78681708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	125	529	2	ENST00000306801.3:c.416G>A	p.Arg139His	p.R139H	ENST00000306801	NM_020761.2	139	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	109	494	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781324	3781326	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	206	993	2	ENST00000262367.5:c.5039_5041delCCT	p.Ser1680del	p.S1680del	ENST00000262367	NM_004380.2	1680	tCCTtg/ttg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497245	149497245	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	179	675	0	ENST00000261799.4:c.3073delC	p.Leu1025CysfsTer20	p.L1025Cfs*20	ENST00000261799	NM_002609.3	1025	Ctg/tg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	133	591	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	185	834	11	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004721	150004721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	30	412	1	ENST00000253339.5:c.1504C>T	p.Arg502Cys	p.R502C	ENST00000253339		502	Cgt/Tgt																																																																														
MET	4233	MSKCC	GRCh37	7	116339505	116339505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	25	251	0	ENST00000397752.3:c.367G>A	p.Asp123Asn	p.D123N	ENST00000397752	NM_000245.2	123	Gac/Aac																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053348	37053348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	49	275	0	ENST00000231790.2:c.588delA	p.Lys196AsnfsTer6	p.K196Nfs*6	ENST00000231790	NM_000249.3	195	Aaa/aa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	T	T	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	57	380	2	ENST00000342788.4:c.1delA	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733223	74733223	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	162	736	0	ENST00000359995.5:c.20del	p.Pro7LeufsTer7	p.P7Lfs*7	ENST00000359995	NM_001195427.1	7	cCt/ct																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	138	733	5	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	131	674	2	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432420	49432420	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	159	764	0	ENST00000301067.7:c.8719del	p.Tyr2907ThrfsTer3	p.Y2907Tfs*3	ENST00000301067	NM_003482.3	2907	Tac/ac																																																																														
ATR	545	MSKCC	GRCh37	3	142297533	142297533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	153	780	0	ENST00000350721.4:c.14G>A	p.Gly5Asp	p.G5D	ENST00000350721	NM_001184.3	5	gGc/gAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639156	3639156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	147	848	0	ENST00000294008.3:c.4483G>A	p.Ala1495Thr	p.A1495T	ENST00000294008	NM_032444.2	1495	Gcg/Acg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272165	15272165	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	162	775	1	ENST00000263388.2:c.6274del	p.Leu2092TrpfsTer57	p.L2092Wfs*57	ENST00000263388	NM_000435.2	2092	Ctg/tg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778167	3778167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	185	872	2	ENST00000262367.5:c.6881G>A	p.Arg2294Gln	p.R2294Q	ENST00000262367	NM_004380.2	2294	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214714	36214714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	151	669	0	ENST00000222270.7:c.3145del	p.Ala1049ArgfsTer133	p.A1049Rfs*133	ENST00000222270	NM_014727.1	1047	cGg/cg																																																																														
INSR	3643	MSKCC	GRCh37	19	7125371	7125371	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55882714		P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	240	718	1	ENST00000302850.5:c.3181G>A	p.Glu1061Lys	p.E1061K	ENST00000302850	NM_000208.2	1061	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133244184	133244184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	154	496	0	ENST00000320574.5:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000320574	NM_006231.2	742	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250842	153250842	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	57	266	0	ENST00000281708.4:c.1218G>A	p.Trp406Ter	p.W406*	ENST00000281708	NM_033632.3	406	tgG/tgA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046350	69046350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	94	391	0	ENST00000288368.4:c.3823G>A	p.Val1275Ile	p.V1275I	ENST00000288368	NM_024870.2	1275	Gtc/Atc																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724362	112724362	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	74	422	0	ENST00000369452.4:c.252del	p.Lys84AsnfsTer7	p.K84Nfs*7	ENST00000369452	NM_007373.3	82	agA/ag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31016154	31016154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	97	449	1	ENST00000375687.4:c.400G>A	p.Ala134Thr	p.A134T	ENST00000375687	NM_015338.5	134	Gca/Aca																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39325212	39325212	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	106	516	0	ENST00000373001.3:c.107A>C	p.Glu36Ala	p.E36A	ENST00000373001	NM_022157.3	36	gAg/gCg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120461131	120461131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	80	399	0	ENST00000256646.2:c.5827G>T	p.Asp1943Tyr	p.D1943Y	ENST00000256646	NM_024408.3	1943	Gat/Tat																																																																														
PARP1	142	MSKCC	GRCh37	1	226570883	226570883	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	60	332	0	ENST00000366794.5:c.1013A>T	p.Glu338Val	p.E338V	ENST00000366794	NM_001618.3	338	gAa/gTa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134267	41134267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	76	328	0	ENST00000379561.5:c.1361A>G	p.Gln454Arg	p.Q454R	ENST00000379561	NM_002015.3	454	cAg/cGg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435365	110435367	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	81	505	0	ENST00000375856.3:c.3034_3036del	p.Ser1012del	p.S1012del	ENST00000375856	NM_003749.2	1012	TCC/-																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708581	43708582	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	131	438	0	ENST00000382044.4:c.4714dup	p.Glu1572GlyfsTer7	p.E1572Gfs*7	ENST00000382044	NM_001141980.1	1572	gaa/gGaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830785	3830785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	113	428	0	ENST00000262367.5:c.1771G>T	p.Gly591Cys	p.G591C	ENST00000262367	NM_004380.2	591	Ggc/Tgc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89858453	89858453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	153	477	0	ENST00000389301.3:c.1107G>T	p.Glu369Asp	p.E369D	ENST00000389301	NM_000135.2	369	gaG/gaT																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110207	8110207	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	112	516	0	ENST00000585124.1:c.399-1G>A		p.X133_splice	ENST00000585124	NM_004217.3	133																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119743	70119743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	109	447	0	ENST00000245479.2:c.745A>G	p.Lys249Glu	p.K249E	ENST00000245479	NM_000346.3	249	Aag/Gag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265705	10265705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	47	388	0	ENST00000340748.4:c.1472C>T	p.Pro491Leu	p.P491L	ENST00000340748		491	cCc/cTc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599890	10599890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	181	788	0	ENST00000171111.5:c.1686C>A	p.His562Gln	p.H562Q	ENST00000171111	NM_203500.1	562	caC/caA																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630344	47630344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	164	722	1	ENST00000233146.2:c.14C>T	p.Pro5Leu	p.P5L	ENST00000233146	NM_000251.2	5	cCg/cTg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57466784	57466784	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	G	G	-			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	35	145	0	ENST00000371085.3:c.5del	p.Gly2AlafsTer56	p.G2Afs*56	ENST00000371085	NM_000516.4	1	atG/at																																																																														
EP300	2033	MSKCC	GRCh37	22	41574392	41574392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	114	554	0	ENST00000263253.7:c.6677G>A	p.Arg2226Gln	p.R2226Q	ENST00000263253	NM_001429.3	2226	cGg/cAg																																																																														
ATR	545	MSKCC	GRCh37	3	142281641	142281641	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	68	362	0	ENST00000350721.4:c.603T>A	p.Asn201Lys	p.N201K	ENST00000350721	NM_001184.3	201	aaT/aaA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201754	66201754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	93	389	0	ENST00000273854.3:c.2748G>T	p.Gln916His	p.Q916H	ENST00000273854	NM_004439.5	916	caG/caT																																																																														
RASA1	5921	MSKCC	GRCh37	5	86681151	86681151	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	33	199	0	ENST00000274376.6:c.2792T>A	p.Ile931Lys	p.I931K	ENST00000274376	NM_002890.2	931	aTa/aAa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149437151	149437151	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	46	546	0	ENST00000286301.3:c.2137A>T	p.Ser713Cys	p.S713C	ENST00000286301	NM_005211.3	713	Agt/Tgt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520552	176520552	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	196	775	0	ENST00000292408.4:c.1397G>T	p.Arg466Met	p.R466M	ENST00000292408	NM_213647.1	466	aGg/aTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324063	31324063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	182	465	0	ENST00000412585.2:c.500C>T	p.Thr167Ile	p.T167I	ENST00000412585	NM_005514.6	167	aCc/aTc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324094	31324094	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	31	291	0	ENST00000412585.2:c.469T>C	p.Trp157Arg	p.W157R	ENST00000412585	NM_005514.6	157	Tgg/Cgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32182010	32182010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	177	718	0	ENST00000375023.3:c.2044G>T	p.Gly682Cys	p.G682C	ENST00000375023	NM_004557.3	682	Ggt/Tgt																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15840947	15840947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	81	159	0	ENST00000307771.7:c.1031G>T	p.Arg344Ile	p.R344I	ENST00000307771	NM_005089.3	344	aGa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	100	593	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	18	373	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	75	189	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953022	2953022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	117	817	0	ENST00000396946.4:c.2918G>A	p.Arg973His	p.R973H	ENST00000396946	NM_032415.4	973	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	117	321	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112174241	112174241	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	103	228	0	ENST00000257430.4:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000257430	NM_000038.5	984	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175551	112175552	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0048258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	90	244	0	ENST00000257430.4:c.4260_4261del	p.Ser1421Ter	p.S1421*	ENST00000257430	NM_000038.5	1420	ccCAgt/ccgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	28	316	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46527668	46527668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	40	338	0	ENST00000262741.5:c.697C>T	p.Gln233Ter	p.Q233*	ENST00000262741	NM_003629.3	233	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578225	7578225	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	77	638	0	ENST00000269305.4:c.624del	p.Asp208GlufsTer39	p.D208Efs*39	ENST00000269305	NM_001126112.2	208	gaC/ga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195681	123195681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048279-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			577	89	490	0	ENST00000218089.9:c.1595C>T	p.Ala532Val	p.A532V	ENST00000218089	NM_001042749.1	532	gCg/gTg																																																																														
STK11	6794	MSKCC	GRCh37	19	1220494	1220494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048279-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			659	165	921	0	ENST00000326873.7:c.587G>T	p.Gly196Val	p.G196V	ENST00000326873	NM_000455.4	196	gGc/gTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039686	47039686	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048279-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			798	154	871	0	ENST00000329236.7:c.904G>T	p.Glu302Ter	p.E302*	ENST00000329236	NM_001204466.1	302	Gag/Tag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65335106	65335106	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048279-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			592	101	471	0	ENST00000342505.4:c.535G>T	p.Glu179Ter	p.E179*	ENST00000342505	NM_002227.2	179	Gag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599889	10599889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048279-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			810	173	974	0	ENST00000171111.5:c.1687C>T	p.Gln563Ter	p.Q563*	ENST00000171111	NM_203500.1	563	Cag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356101	66356101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048279-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			537	42	348	0	ENST00000273854.3:c.1396C>A	p.Gln466Lys	p.Q466K	ENST00000273854	NM_004439.5	466	Caa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70354574	70354574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048279-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			525	28	478	0	ENST00000374080.3:c.4739C>A	p.Thr1580Asn	p.T1580N	ENST00000374080		1580	aCt/aAt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123199796	123199796	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0048279-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			265	48	244	0	ENST00000218089.9:c.2096A>T	p.Asn699Ile	p.N699I	ENST00000218089	NM_001042749.1	699	aAt/aTt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38954919	38954923	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCC	TGTCC	ATA			P-0048279-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			278	35	249	0	ENST00000357387.3:c.2650_2654delinsTAT	p.Gly884TyrfsTer6	p.G884Yfs*6	ENST00000357387	NM_152756.3	884	GGACAa/TATa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0048283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	29	807	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0048283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	42	659	2	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108224591	108224591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	20	259	0	ENST00000278616.4:c.8770G>A	p.Glu2924Lys	p.E2924K	ENST00000278616	NM_000051.3	2924	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	150	811	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	33	214	1	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968597	55968597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34038364		P-0048313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	35	649	3	ENST00000263923.4:c.2066C>T	p.Thr689Met	p.T689M	ENST00000263923	NM_002253.2	689	aCg/aTg																																																																														
WT1	7490	MSKCC	GRCh37	11	32439147	32439147	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	70	525	0	ENST00000332351.3:c.926T>A	p.Met309Lys	p.M309K	ENST00000332351	NM_024426.4	309	aTg/aAg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739669	41739669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	50	653	0	ENST00000242208.4:c.304G>A	p.Glu102Lys	p.E102K	ENST00000242208	NM_002192.2	102	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373380	118373380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	44	475	0	ENST00000534358.1:c.6773G>C	p.Ser2258Thr	p.S2258T	ENST00000534358	NM_005933.3	2258	aGt/aCt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877195	151877195	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	62	403	0	ENST00000262189.6:c.7166A>C	p.Glu2389Ala	p.E2389A	ENST00000262189	NM_170606.2	2389	gAa/gCa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242483	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAAGCAACA	ATTAAGAGAAGCAACA	C			P-0048315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	30	363	2	ENST00000275493.2:c.2238_2253delinsC	p.Glu746_Thr751delinsAsp	p.E746_T751delinsD	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACA/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	275	657	0	ENST00000269305.4:c.581T>A	p.Leu194His	p.L194H	ENST00000269305	NM_001126112.2	194	cTt/cAt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38273416	38273416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	217	943	1	ENST00000425967.3:c.1919G>A	p.Arg640Gln	p.R640Q	ENST00000425967	NM_001174067.1	640	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112175247	112175248	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0048320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	162	196	0	ENST00000257430.4:c.3959_3960dup	p.Ser1321Ter	p.S1321*	ENST00000257430	NM_000038.5	1319	cct/ccTGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0048322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	201	637	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	118	268	0				ENST00000310581	NM_198253.2																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123260409	123260409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	122	555	0	ENST00000358487.5:c.1492G>A	p.Ala498Thr	p.A498T	ENST00000358487	NM_000141.4	498	Gcg/Acg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425329	49425329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	160	806	0	ENST00000301067.7:c.13159del	p.Gln4387ArgfsTer16	p.Q4387Rfs*16	ENST00000301067	NM_003482.3	4387	Cag/ag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096243	178096243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	84	427	0	ENST00000397062.3:c.1088C>T	p.Ser363Phe	p.S363F	ENST00000397062	NM_006164.4	363	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971179	21971180	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCACT			P-0048322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	111	364	0	ENST00000304494.5:c.174_178dup	p.Ala60GlufsTer88	p.A60Efs*88	ENST00000304494	NM_000077.4	60	gcg/gAGTGGcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971179	21971180	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCACT			P-0048322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	111	364	0	ENST00000304494.5:c.174_178dup	p.Ala60GlufsTer88	p.A60Efs*88	ENST00000304494	NM_000077.4	60	gcg/gAGTGGcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971179	21971180	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCACT			P-0048322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	111	364	0	ENST00000304494.5:c.174_178dup	p.Ala60GlufsTer88	p.A60Efs*88	ENST00000304494	NM_000077.4	60	gcg/gAGTGGcg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	881	415	1				ENST00000310581	NM_198253.2																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56478922	56478922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	704	765	1	ENST00000267101.3:c.378C>A	p.Asn126Lys	p.N126K	ENST00000267101	NM_001982.3	126	aaC/aaA																																																																														
RB1	5925	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	168	308	0	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga																																																																														
KIT	3815	MSKCC	GRCh37	4	55561764	55561764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	58	308	0	ENST00000288135.5:c.154G>A	p.Asp52Asn	p.D52N	ENST00000288135	NM_000222.2	52	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	831	882	0	ENST00000269305.4:c.398T>C	p.Met133Thr	p.M133T	ENST00000269305	NM_001126112.2	133	aTg/aCg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99459340	99459340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	82	449	0	ENST00000268035.6:c.1976G>C	p.Arg659Pro	p.R659P	ENST00000268035	NM_000875.3	659	cGg/cCg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383249	42383249	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137953079		P-0048009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	107	753	0	ENST00000221972.3:c.269C>T	p.Thr90Met	p.T90M	ENST00000221972	NM_021601.3	90	aCg/aTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872197	45872197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	313	655	0	ENST00000391945.4:c.237G>C	p.Glu79Asp	p.E79D	ENST00000391945	NM_000400.3	79	gaG/gaC																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118371824	118371824	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	163	386	0	ENST00000534358.1:c.6284del	p.Asn2095ThrfsTer26	p.N2095Tfs*26	ENST00000534358	NM_005933.3	2094	gAa/ga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118380680	118380699	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGAGGAAAGTAATTTCAG	GAAGAGGAAAGTAATTTCAG	-			P-0048009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	73	271	0	ENST00000534358.1:c.10918_10937del	p.Glu3640LeufsTer19	p.E3640Lfs*19	ENST00000534358	NM_005933.3	3640	GAAGAGGAAAGTAATTTCAGc/c																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114195	115114195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	48	652	0	ENST00000257566.3:c.1022G>A	p.Ser341Asn	p.S341N	ENST00000257566	NM_016569.3	341	aGt/aAt																																																																														
YES1	7525	MSKCC	GRCh37	18	756664	756664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	660	481	0	ENST00000314574.4:c.164G>T	p.Ser55Ile	p.S55I	ENST00000314574	NM_005433.3	55	aGc/aTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524138	187524138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	106	498	0	ENST00000441802.2:c.11401G>A	p.Glu3801Lys	p.E3801K	ENST00000441802	NM_005245.3	3801	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	582	663	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137071	64137071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	128	667	1	ENST00000334205.4:c.1582C>A	p.His528Asn	p.H528N	ENST00000334205	NM_003942.2	528	Cac/Aac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202852	16202852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	109	621	0	ENST00000375759.3:c.560G>A	p.Arg187Gln	p.R187Q	ENST00000375759	NM_015001.2	187	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	127	497	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	88	388	7	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625426	69625426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	197	1084	1	ENST00000334134.2:c.367G>A	p.Glu123Lys	p.E123K	ENST00000334134	NM_005247.2	123	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	112	415	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427984	49427984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	138	821	1	ENST00000301067.7:c.10606C>T	p.Arg3536Cys	p.R3536C	ENST00000301067	NM_003482.3	3536	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444879	49444879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	193	984	3	ENST00000301067.7:c.2587C>T	p.Arg863Trp	p.R863W	ENST00000301067	NM_003482.3	863	Cgg/Tgg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557726	21557726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	161	781	0	ENST00000382592.4:c.2119C>T	p.Arg707Trp	p.R707W	ENST00000382592	NM_014572.2	707	Cgg/Tgg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606150	81606150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	100	491	0	ENST00000298171.2:c.820C>T	p.Arg274Trp	p.R274W	ENST00000298171	NM_000369.2	274	Cgg/Tgg																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2094668	2094668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1244	113	1147	2	ENST00000219066.1:c.512C>T	p.Thr171Met	p.T171M	ENST00000219066	NM_002528.5	171	aCg/aTg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14031663	14031663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	90	390	0	ENST00000311895.7:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000311895	NM_005236.2	618	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	177	1002	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	58	326	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																														
STK11	6794	MSKCC	GRCh37	19	1226570	1226570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	209	1053	6	ENST00000326873.7:c.1226G>A	p.Arg409Gln	p.R409Q	ENST00000326873	NM_000455.4	409	cGg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141427	11141427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	176	896	0	ENST00000344626.4:c.3404G>A	p.Arg1135Gln	p.R1135Q	ENST00000344626	NM_003072.3	1135	cGg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298005	15298005	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1157	268	1344	0	ENST00000263388.2:c.1751A>C	p.Asp584Ala	p.D584A	ENST00000263388	NM_000435.2	584	gAc/gCc																																																																														
CIC	23152	MSKCC	GRCh37	19	42798112	42798112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	180	882	0	ENST00000575354.2:c.4066G>A	p.Glu1356Lys	p.E1356K	ENST00000575354	NM_015125.3	1356	Gaa/Aaa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910611	50910611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	201	980	1	ENST00000440232.2:c.1714G>A	p.Val572Met	p.V572M	ENST00000440232	NM_002691.3	572	Gtg/Atg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790143	40790143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	118	757	0	ENST00000373198.4:c.2588C>T	p.Thr863Met	p.T863M	ENST00000373198	NM_133170.3	863	aCg/aTg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	127	317	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620470	52620470	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	134	519	0	ENST00000394830.3:c.3283C>T	p.Arg1095Ter	p.R1095*	ENST00000394830	NM_018313.4	1095	Cga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280027	66280027	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	64	236	0	ENST00000273854.3:c.1662A>T	p.Arg554Ser	p.R554S	ENST00000273854	NM_004439.5	554	agA/agT																																																																														
IRF4	3662	MSKCC	GRCh37	6	397141	397141	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	121	512	0	ENST00000380956.4:c.526C>T	p.Arg176Ter	p.R176*	ENST00000380956	NM_001195286.1	176	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140482864	140482864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	131	583	0	ENST00000288602.6:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000288602	NM_004333.4	424	cGa/cAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	198	631	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	198	631	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	198	631	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399363	139399363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	232	1197	3	ENST00000277541.6:c.4780C>T	p.Arg1594Trp	p.R1594W	ENST00000277541	NM_017617.3	1594	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	144	363	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	262	901	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112174043	112174043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	107	320	0	ENST00000257430.4:c.2752G>T	p.Glu918Ter	p.E918*	ENST00000257430	NM_000038.5	918	Gag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129867	55129867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	51	504	2	ENST00000257290.5:c.401C>T	p.Thr134Met	p.T134M	ENST00000257290	NM_006206.4	134	aCg/aTg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386388	31386388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	312	837	0	ENST00000328111.2:c.1613G>A	p.Arg538His	p.R538H	ENST00000328111	NM_006892.3	538	cGc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70338609	70338609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	80	739	0	ENST00000374080.3:c.5C>T	p.Ala2Val	p.A2V	ENST00000374080		2	gCg/gTg																																																																														
MET	4233	MSKCC	GRCh37	7	116371800	116371800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	196	383	0	ENST00000397752.3:c.1279G>A	p.Val427Ile	p.V427I	ENST00000397752	NM_000245.2	427	Gtt/Att																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007266-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	223	272	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479774	67479774	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007266-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	338	573	0	ENST00000327367.4:c.1081G>C	p.Glu361Gln	p.E361Q	ENST00000327367	NM_005902.3	361	Gag/Cag																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073495	8073497	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0007266-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	228	336	0	ENST00000377482.5:c.1162_1164del	p.Lys388del	p.K388del	ENST00000377482	NM_018948.3	388	AAG/-																																																																														
PMAIP1	5366	MSKCC	GRCh37	18	57569909	57569916	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGATTT	GGAGATTT	-			P-0007266-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	88	206	0	ENST00000316660.6:c.94_101del	p.Phe32GlnfsTer53	p.F32Qfs*53	ENST00000316660	NM_021127.2	30	aGGAGATTT/a																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249743	39249743	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007266-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	142	344	0	ENST00000402219.2:c.1826T>G	p.Leu609Arg	p.L609R	ENST00000402219	NM_005633.3	609	cTt/cGt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180055929	180055931	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0007266-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	109	894	0	ENST00000261937.6:c.1054_1056del	p.Val352del	p.V352del	ENST00000261937	NM_182925.4	352	GTG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	50	502	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			110	504	609	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386450	31386450	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	195	578	0	ENST00000328111.2:c.1674+1G>C		p.X558_splice	ENST00000328111	NM_006892.3	558																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100403	8100403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			409	251	839	0	ENST00000346208.3:c.377C>A	p.Ser126Tyr	p.S126Y	ENST00000346208		126	tCc/tAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670880	134670880	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			254	91	287	0	ENST00000398015.3:c.791G>T	p.Ser264Ile	p.S264I	ENST00000398015	NM_004441.4	264	aGc/aTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507321	8507321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			49	206	246	0	ENST00000356435.5:c.1657G>A	p.Asp553Asn	p.D553N	ENST00000356435		553	Gat/Aat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187817	11187817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			243	143	408	1	ENST00000361445.4:c.6080G>T	p.Trp2027Leu	p.W2027L	ENST00000361445	NM_004958.3	2027	tGg/tTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11316145	11316145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			366	217	525	0	ENST00000361445.4:c.609G>C	p.Gln203His	p.Q203H	ENST00000361445	NM_004958.3	203	caG/caC																																																																														
RFWD2	0	MSKCC	GRCh37	1	175996765	175996765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			428	165	371	0	ENST00000367669.3:c.1672G>T	p.Val558Leu	p.V558L	ENST00000367669	NM_022457.5	558	Gtg/Ttg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94192687	94192710	+	inframe_deletion	In_Frame_Del	DEL	CCACAAATTCTTGTACTGCTTCAC	CCACAAATTCTTGTACTGCTTCAC	-			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			305	306	387	0	ENST00000323929.3:c.1364_1387del	p.Gly455_Val462del	p.G455_V462del	ENST00000323929	NM_005591.3	455	gGTGAAGCAGTACAAGAATTTGTGGac/gac																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204761	94204761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			345	134	264	0	ENST00000323929.3:c.824C>A	p.Ser275Tyr	p.S275Y	ENST00000323929	NM_005591.3	275	tCc/tAc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497576	125497576	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			254	94	198	0	ENST00000428830.2:c.140A>G	p.Asp47Gly	p.D47G	ENST00000428830	NM_001114121.2	47	gAc/gGc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337660	73337660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			103	138	139	0	ENST00000377767.4:c.2056G>C	p.Ala686Pro	p.A686P	ENST00000377767	NM_014953.3	686	Gct/Cct																																																																														
MAX	4149	MSKCC	GRCh37	14	65544683	65544684	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			139	382	525	0	ENST00000358664.4:c.242_243del	p.His81ProfsTer5	p.H81Pfs*5	ENST00000358664	NM_002382.4	81	cAC/c																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43772156	43772156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			385	238	540	0	ENST00000382044.4:c.559G>C	p.Glu187Gln	p.E187Q	ENST00000382044	NM_001141980.1	187	Gag/Cag																																																																														
PALB2	79728	MSKCC	GRCh37	16	23614983	23614983	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			41	226	256	0	ENST00000261584.4:c.3358G>T	p.Glu1120Ter	p.E1120*	ENST00000261584	NM_024675.3	1120	Gaa/Taa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56867141	56867141	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			80	406	481	0	ENST00000308159.5:c.1360A>T	p.Thr454Ser	p.T454S	ENST00000308159	NM_014669.4	454	Acg/Tcg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435602	56435602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			590	238	624	0	ENST00000407977.2:c.1535G>T	p.Ser512Ile	p.S512I	ENST00000407977		512	aGc/aTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226361	2226361	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			146	619	901	0	ENST00000398665.3:c.3841G>T	p.Glu1281Ter	p.E1281*	ENST00000398665	NM_032482.2	1281	Gag/Tag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18964065	18964065	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			60	262	441	0	ENST00000262803.5:c.1062G>T	p.Met354Ile	p.M354I	ENST00000262803	NM_002911.3	354	atG/atT																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794361	242794361	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200312345		P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			580	211	750	0	ENST00000334409.5:c.581G>A	p.Arg194Gln	p.R194Q	ENST00000334409	NM_005018.2	194	cGg/cAg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52649469	52649469	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			212	129	345	0	ENST00000394830.3:c.1822T>G	p.Tyr608Asp	p.Y608D	ENST00000394830	NM_018313.4	608	Tat/Gat																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137522018	137522018	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			23	104	115	0	ENST00000367739.4:c.861G>C	p.Leu287Phe	p.L287F	ENST00000367739	NM_000416.2	287	ttG/ttC																																																																														
PREX2	80243	MSKCC	GRCh37	8	69103970	69103970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			268	163	336	0	ENST00000288368.4:c.4360G>T	p.Asp1454Tyr	p.D1454Y	ENST00000288368	NM_024870.2	1454	Gac/Tac																																																																														
ABL1	25	MSKCC	GRCh37	9	133748425	133748425	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			55	194	310	0	ENST00000318560.5:c.1085+1G>T		p.X362_splice	ENST00000318560	NM_005157.4	362																																																																															
BTK	695	MSKCC	GRCh37	X	100617573	100617574	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			52	193	261	1	ENST00000308731.7:c.495_496delinsAA	p.Cys165_Gln166delinsTer	p.C165_Q166delins*	ENST00000308731	NM_000061.2	165	tgCCaa/tgAAaa																																																																														
FH	2271	MSKCC	GRCh37	1	241676920	241676920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			319	111	312	0	ENST00000366560.3:c.361A>G	p.Met121Val	p.M121V	ENST00000366560	NM_000143.3	121	Atg/Gtg																																																																														
MSI2	124540	MSKCC	GRCh37	17	55693391	55693391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			611	232	602	0	ENST00000284073.2:c.598G>T	p.Ala200Ser	p.A200S	ENST00000284073	NM_138962.2	200	Gcc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827927	40827927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			625	149	477	0	ENST00000373198.4:c.2501G>T	p.Arg834Leu	p.R834L	ENST00000373198	NM_133170.3	834	cGc/cTc																																																																														
RAC2	5880	MSKCC	GRCh37	22	37628870	37628870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			388	227	681	0	ENST00000249071.6:c.196C>T	p.Arg66Cys	p.R66C	ENST00000249071	NM_002872.4	66	Cgt/Tgt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438568	52438568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			229	173	480	0	ENST00000460680.1:c.1151G>A	p.Ser384Asn	p.S384N	ENST00000460680	NM_004656.3	384	aGc/aAc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143326387	143326387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			243	142	325	0	ENST00000262992.4:c.227C>T	p.Thr76Ile	p.T76I	ENST00000262992	NM_001101669.1	76	aCa/aTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974719	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	CGC	CGC	GG			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			91	259	367	2	ENST00000304494.5:c.106_108delinsCC	p.Ala36ProfsTer17	p.A36Pfs*17	ENST00000304494	NM_000077.4	36	GCG/CC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974719	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	CGC	CGC	GG			P-0032183-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			91	259	367	2	ENST00000304494.5:c.106_108delinsCC	p.Ala36ProfsTer17	p.A36Pfs*17	ENST00000304494	NM_000077.4	36	GCG/CC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047188-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			168	118	344	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0047188-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	118	224	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992901	72992901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047188-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			204	136	761	0	ENST00000268489.5:c.1144G>T	p.Gly382Cys	p.G382C	ENST00000268489	NM_006885.3	382	Ggc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36209098	36209098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047188-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			55	20	104	0	ENST00000222270.7:c.178G>A	p.Glu60Lys	p.E60K	ENST00000222270	NM_014727.1	60	Gag/Aag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468085	120468085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047188-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	162	725	0	ENST00000256646.2:c.4354G>T	p.Gly1452Trp	p.G1452W	ENST00000256646	NM_024408.3	1452	Ggg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133219263	133219263	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047188-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	153	839	1	ENST00000320574.5:c.4781A>T	p.Lys1594Met	p.K1594M	ENST00000320574	NM_006231.2	1594	aAg/aTg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56852581	56852581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047188-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			212	147	478	0	ENST00000308159.5:c.495C>A	p.Ser165Arg	p.S165R	ENST00000308159	NM_014669.4	165	agC/agA																																																																														
PAK7	0	MSKCC	GRCh37	20	9523285	9523285	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047188-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			138	189	600	1	ENST00000353224.5:c.1952C>A	p.Ala651Glu	p.A651E	ENST00000353224	NM_177990.2	651	gCg/gAg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249590	110249590	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs139364854		P-0047188-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	155	1170	0	ENST00000374672.4:c.1085C>G	p.Pro362Arg	p.P362R	ENST00000374672	NM_004235.4	362	cCg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			842	1359	468	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			760	198	584	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221822	55221822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149840192		P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	1898	768	2	ENST00000275493.2:c.866C>T	p.Ala289Val	p.A289V	ENST00000275493	NM_005228.3	289	gCc/gTc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852523	63852523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	35	370	1	ENST00000279873.7:c.3301C>T	p.His1101Tyr	p.H1101Y	ENST00000279873	NM_032199.2	1101	Cat/Tat																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121437369	121437369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			976	99	765	0	ENST00000257555.6:c.1707C>A	p.Ser569Arg	p.S569R	ENST00000257555		569	agC/agA																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632778	23632778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	38	345	0	ENST00000261584.4:c.3018G>C	p.Leu1006Phe	p.L1006F	ENST00000261584	NM_024675.3	1006	ttG/ttC																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040983	47040984	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	GCT			P-0047583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			518	145	423	1	ENST00000329236.7:c.1279_1280delinsGCT	p.Pro427AlafsTer13	p.P427Afs*13	ENST00000329236	NM_001204466.1	427	CCt/GCTt																																																																														
BLM	641	MSKCC	GRCh37	15	91328225	91328225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	31	441	0	ENST00000355112.3:c.2737C>A	p.Leu913Ile	p.L913I	ENST00000355112	NM_000057.2	913	Ctc/Atc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56862941	56862941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	25	445	0	ENST00000308159.5:c.847C>A	p.Leu283Met	p.L283M	ENST00000308159	NM_014669.4	283	Ctg/Atg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879630	37879630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	59	836	0	ENST00000269571.5:c.2005G>T	p.Val669Leu	p.V669L	ENST00000269571		669	Gtg/Ttg																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111921745	111921745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	21	370	0	ENST00000393256.3:c.534C>A	p.His178Gln	p.H178Q	ENST00000393256	NM_006538.4	178	caC/caA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	138	523	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	9	450	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	76	347	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	89	223	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	24	292	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	116	394	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	41	191	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	22	341	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	101	482	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	45	741	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	197	730	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	34	576	0	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260247	149260247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	285	798	0	ENST00000360632.3:c.646G>A	p.Ala216Thr	p.A216T	ENST00000360632	NM_015472.4	216	Gca/Aca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653811	89653811	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	19	329	0	ENST00000371953.3:c.111del	p.Pro38LeufsTer16	p.P38Lfs*16	ENST00000371953	NM_000314.4	37	Ttt/tt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374205	118374205	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	18	325	0	ENST00000534358.1:c.7601del	p.Asn2534MetfsTer9	p.N2534Mfs*9	ENST00000534358	NM_005933.3	2533	gAa/ga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244982	46244982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	154	484	0	ENST00000334344.6:c.3076G>A	p.Val1026Ile	p.V1026I	ENST00000334344	NM_152641.2	1026	Gta/Ata																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351457	89351457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	202	601	0	ENST00000301030.4:c.1493G>C	p.Ser498Thr	p.S498T	ENST00000301030	NM_001256183.1	498	aGc/aCc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120283	70120284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	89	855	0	ENST00000245479.2:c.1286_1287dup	p.Pro430AlafsTer41	p.P430Afs*41	ENST00000245479	NM_000346.3	429	agc/aGCgc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368207	45368207	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	53	268	0	ENST00000262160.6:c.1395C>G	p.Ser465Arg	p.S465R	ENST00000262160	NM_005901.5	465	agC/agG																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18272862	18272862	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	218	707	0	ENST00000222254.8:c.901+1G>A		p.X301_splice	ENST00000222254	NM_005027.3	301																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178951986	178951986	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	15	326	0	ENST00000263967.3:c.3041A>G	p.Gln1014Arg	p.Q1014R	ENST00000263967	NM_006218.2	1014	cAa/cGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151896437	151896437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	16	384	0	ENST00000262189.6:c.4200C>A	p.Asn1400Lys	p.N1400K	ENST00000262189	NM_170606.2	1400	aaC/aaA																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0048228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	1005	711	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0048228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	375	755	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0048228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	180	395	1	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217229	11217229	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	310	691	0	ENST00000361445.4:c.4449C>G	p.Cys1483Trp	p.C1483W	ENST00000361445	NM_004958.3	1483	tgC/tgG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	114	416	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111533	8111533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	42	665	0	ENST00000346208.3:c.1019C>T	p.Ala340Val	p.A340V	ENST00000346208		340	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	275	814	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
STK40	83931	MSKCC	GRCh37	1	36823932	36823932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	80	809	0	ENST00000373129.3:c.250C>T	p.Arg84Trp	p.R84W	ENST00000373129	NM_032017.1	84	Cgg/Tgg																																																																														
ATR	545	MSKCC	GRCh37	3	142180912	142180924	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTGCATCTTTT	CTCTGCATCTTTT	-			P-0048231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	45	308	0	ENST00000350721.4:c.7050_7062del	p.Arg2350SerfsTer17	p.R2350Sfs*17	ENST00000350721	NM_001184.3	2350	agAAAAGATGCAGAG/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	204	1127	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	110	1066	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173283	112173284	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	27	171	0	ENST00000257430.4:c.1993_1994delTT	p.Leu665IlefsTer8	p.L665Ifs*8	ENST00000257430	NM_000038.5	664	acTTta/acta																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168694	32168694	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143040647		P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	212	1203	2	ENST00000375023.3:c.4229G>A	p.Arg1410His	p.R1410H	ENST00000375023	NM_004557.3	1410	cGc/cAc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982309	201982309	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	346	1131	0	ENST00000359651.3:c.689-1G>C		p.X230_splice	ENST00000359651		230																																																																															
CYLD	1540	MSKCC	GRCh37	16	50815172	50815172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	149	577	0	ENST00000398568.2:c.1525G>A	p.Gly509Ser	p.G509S	ENST00000398568	NM_001042412.1	509	Ggc/Agc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441118	149441118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	249	1122	0	ENST00000286301.3:c.1794G>T	p.Glu598Asp	p.E598D	ENST00000286301	NM_005211.3	598	gaG/gaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	18	268	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	45	811	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575121	48575122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	18	244	0	ENST00000342988.3:c.320dup	p.Asn107LysfsTer2	p.N107Kfs*2	ENST00000342988	NM_005359.5	105	-/A																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974759	21974759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	19	315	0	ENST00000304494.5:c.68del	p.Gly23ValfsTer3	p.G23Vfs*3	ENST00000304494	NM_000077.4	23	gGt/gt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974759	21974759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	19	315	0	ENST00000304494.5:c.68del	p.Gly23ValfsTer3	p.G23Vfs*3	ENST00000304494	NM_000077.4	23	gGt/gt																																																																														
MGA	23269	MSKCC	GRCh37	15	42040891	42040891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	23	468	0	ENST00000219905.7:c.5269C>T	p.Arg1757Cys	p.R1757C	ENST00000219905	NM_001164273.1	1757	Cgt/Tgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	186	280	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	333	540	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729114	66729114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	247	434	0	ENST00000307102.5:c.322C>T	p.Arg108Trp	p.R108W	ENST00000307102	NM_002755.3	108	Cgg/Tgg																																																																														
CIC	23152	MSKCC	GRCh37	19	42791974	42791974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	520	726	0	ENST00000575354.2:c.778C>A	p.His260Asn	p.H260N	ENST00000575354	NM_015125.3	260	Cac/Aac																																																																														
RRAS	6237	MSKCC	GRCh37	19	50138634	50138890	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GGTGGGGACAGGAGGCGTTGGCAGAAGGCACACAGTGGCAGTAGCCCAGAAGAGGCCAGGAAGTAAGGGTGGGTATGTGATGTGTCCTGGGAGACCCAGATGAGGAAATTGAGGCTCAGTGAGGGCCTCAGGTCACACAGCAAGGTGCGAAGGCAGCTAGTCCCGAGAGCTTGTGGTGGTTGCTTCTCTCTTGCCTGGGCTACAGGAGGACGCAGGGGCAGCCCCCGCCCTTCTTCCTGGGGGCACTGGGAGGGCTC	GGTGGGGACAGGAGGCGTTGGCAGAAGGCACACAGTGGCAGTAGCCCAGAAGAGGCCAGGAAGTAAGGGTGGGTATGTGATGTGTCCTGGGAGACCCAGATGAGGAAATTGAGGCTCAGTGAGGGCCTCAGGTCACACAGCAAGGTGCGAAGGCAGCTAGTCCCGAGAGCTTGTGGTGGTTGCTTCTCTCTTGCCTGGGCTACAGGAGGACGCAGGGGCAGCCCCCGCCCTTCTTCCTGGGGGCACTGGGAGGGCTC	-			P-0048237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	264	116	0	ENST00000246792.3:c.600_*199del		p.*200*	ENST00000246792	NM_006270.3	200																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	113	415	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	126	162	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	137	288	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247165	153247165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	48	145	0	ENST00000281708.4:c.1637C>T	p.Ser546Leu	p.S546L	ENST00000281708	NM_033632.3	546	tCa/tTa																																																																														
BCL6	604	MSKCC	GRCh37	3	187444519	187444519	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	151	451	1	ENST00000232014.4:c.1708G>A	p.Gly570Ser	p.G570S	ENST00000232014	NM_001130845.1	570	Ggt/Agt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374945	45374945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	283	299	0	ENST00000262160.6:c.898G>C	p.Asp300His	p.D300H	ENST00000262160	NM_005901.5	300	Gat/Cat																																																																														
ERF	2077	MSKCC	GRCh37	19	42754077	42754077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	151	396	0	ENST00000222329.4:c.275G>A	p.Arg92His	p.R92H	ENST00000222329	NM_006494.2	92	cGc/cAc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	114	342	0	ENST00000327367.4:c.1265C>T	p.Ser422Phe	p.S422F	ENST00000327367	NM_005902.3	422	tCc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245547	153245547	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	64	183	0	ENST00000281708.4:c.1645-1G>C		p.X549_splice	ENST00000281708	NM_033632.3	549																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176519674	176519674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	200	695	0	ENST00000292408.4:c.946G>A	p.Glu316Lys	p.E316K	ENST00000292408	NM_213647.1	316	Gag/Aag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041677	47041677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	160	475	0	ENST00000329236.7:c.1668G>C	p.Lys556Asn	p.K556N	ENST00000329236	NM_001204466.1	556	aaG/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0048241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	242	591	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	187	197	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																														
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	312	553	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687424	37687424	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	169	371	1	ENST00000447079.4:c.4328T>A	p.Leu1443Gln	p.L1443Q	ENST00000447079	NM_015083.1	1443	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	106	516	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	37	287	1	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																														
CIC	23152	MSKCC	GRCh37	19	42798324	42798324	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	126	570	0	ENST00000575354.2:c.4196-1G>A		p.X1399_splice	ENST00000575354	NM_015125.3	1399																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266050	41266639	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	CAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATG	CAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATG	-			P-0048244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	34	202	0	ENST00000349496.5:c.51_440del		p.X17_splice	ENST00000349496	NM_001904.3	17	cCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGca/cca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295276	1295276	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0048244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	109	475	1				ENST00000310581	NM_198253.2																																																																																
RAD21	5885	MSKCC	GRCh37	8	117869619	117869619	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	43	278	0	ENST00000297338.2:c.575T>G	p.Leu192Arg	p.L192R	ENST00000297338	NM_006265.2	192	cTa/cGa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	103	257	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	249	632	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273905	10273905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	212	813	1	ENST00000330684.3:c.364G>A	p.Val122Ile	p.V122I	ENST00000330684	NM_001134407.1	122	Gtc/Atc																																																																														
ATRX	546	MSKCC	GRCh37	X	76907804	76907804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	22	110	0	ENST00000373344.5:c.4357G>A	p.Glu1453Lys	p.E1453K	ENST00000373344	NM_000489.3	1453	Gag/Aag																																																																														
BIRC3	330	MSKCC	GRCh37	11	102207817	102207817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	67	127	0	ENST00000263464.3:c.1799G>A	p.Arg600His	p.R600H	ENST00000263464	NM_001165.4	600	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447415	49447415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	92	512	2	ENST00000301067.7:c.683G>A	p.Arg228His	p.R228H	ENST00000301067	NM_003482.3	228	cGc/cAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80171569	80171569	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	24	205	0	ENST00000265081.6:c.3303-1G>A		p.X1101_splice	ENST00000265081	NM_002439.4	1101																																																																															
APC	324	MSKCC	GRCh37	5	112174476	112174477	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	111	152	0	ENST00000257430.4:c.3186_3187del	p.Ser1063Ter	p.S1063*	ENST00000257430	NM_000038.5	1062	cAA/c																																																																														
BRAF	673	MSKCC	GRCh37	7	140508739	140508739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	43	373	0	ENST00000288602.6:c.561G>A	p.Met187Ile	p.M187I	ENST00000288602	NM_004333.4	187	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	351	604	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947852	178947852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	297	201	0	ENST00000263967.3:c.2727C>A	p.Phe909Leu	p.F909L	ENST00000263967	NM_006218.2	909	ttC/ttA																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861143	57861143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	220	449	1	ENST00000228682.2:c.940C>T	p.Arg314Cys	p.R314C	ENST00000228682	NM_005269.2	314	Cgc/Tgc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21553871	21553871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	210	369	0	ENST00000382592.4:c.2731C>T	p.Pro911Ser	p.P911S	ENST00000382592	NM_014572.2	911	Ccg/Tcg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	126	322	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1279483	1279483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	169	1146	2	ENST00000310581.5:c.2053G>A	p.Asp685Asn	p.D685N	ENST00000310581	NM_198253.2	685	Gat/Aat																																																																														
ALK	238	MSKCC	GRCh37	2	29917772	29917772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	156	805	0	ENST00000389048.3:c.896C>T	p.Ser299Phe	p.S299F	ENST00000389048	NM_004304.4	299	tCc/tTc																																																																														
AXL	558	MSKCC	GRCh37	19	41727805	41727805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	197	868	0	ENST00000301178.4:c.430G>A	p.Glu144Lys	p.E144K	ENST00000301178	NM_021913.4	144	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	103	404	0				ENST00000310581	NM_198253.2																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36213539	36213539	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	223	1080	0	ENST00000222270.7:c.2641C>T	p.Gln881Ter	p.Q881*	ENST00000222270	NM_014727.1	881	Cag/Tag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097766	8097766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	125	710	0	ENST00000346208.3:c.148C>T	p.Leu50Phe	p.L50F	ENST00000346208		50	Ctt/Ttt																																																																														
PAK1	5058	MSKCC	GRCh37	11	77069980	77069980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	93	479	0	ENST00000356341.3:c.560C>T	p.Pro187Leu	p.P187L	ENST00000356341	NM_002576.4	187	cCa/cTa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81973631	81973631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	108	481	0	ENST00000359376.3:c.3448C>T	p.His1150Tyr	p.H1150Y	ENST00000359376	NM_002661.3	1150	Cat/Tat																																																																														
ALK	238	MSKCC	GRCh37	2	29462670	29462671	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0048261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	158	786	1	ENST00000389048.3:c.2230_2231delinsAA	p.Gly744Lys	p.G744K	ENST00000389048	NM_004304.4	744	GGg/AAg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920347	1920347	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	127	552	0	ENST00000382891.5:c.1407T>G	p.Asp469Glu	p.D469E	ENST00000382891	NM_133335.3	469	gaT/gaG																																																																														
ABL1	25	MSKCC	GRCh37	9	133759730	133759730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	114	724	0	ENST00000318560.5:c.2053C>T	p.His685Tyr	p.H685Y	ENST00000318560	NM_005157.4	685	Cac/Tac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061207	38061207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	27	681	2	ENST00000250448.2:c.782G>A	p.Arg261His	p.R261H	ENST00000250448	NM_004496.3	261	cGc/cAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137850	64137850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	79	1166	0	ENST00000334205.4:c.1951G>T	p.Val651Phe	p.V651F	ENST00000334205	NM_003942.2	651	Gtc/Ttc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618693	37618694	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0048262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	22	551	0	ENST00000447079.4:c.371_372del	p.Lys124SerfsTer2	p.K124Sfs*2	ENST00000447079	NM_015083.1	123	ctAAaa/ctaa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37671982	37671982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0048262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	56	352	0	ENST00000447079.4:c.2769-2A>G		p.X923_splice	ENST00000447079	NM_015083.1	923																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858363	27858363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	77	792	0	ENST00000359303.2:c.208C>T	p.Arg70Cys	p.R70C	ENST00000359303	NM_003535.2	70	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0048265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	85	551	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
RARA	5914	MSKCC	GRCh37	17	38508746	38508746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	67	542	0	ENST00000254066.5:c.794G>T	p.Cys265Phe	p.C265F	ENST00000254066	NM_000964.3	265	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	45	407	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	77	445	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	24	316	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0048269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	28	403	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28963952	28963952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	28	286	0	ENST00000282397.4:c.1950G>T	p.Lys650Asn	p.K650N	ENST00000282397	NM_002019.4	650	aaG/aaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	127	408	0				ENST00000310581	NM_198253.2																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3801734	3801734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	154	427	0	ENST00000262367.5:c.3772C>T	p.Pro1258Ser	p.P1258S	ENST00000262367	NM_004380.2	1258	Ccc/Tcc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435490	18435490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	44	199	0	ENST00000266497.5:c.475G>A	p.Glu159Lys	p.E159K	ENST00000266497		159	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	233	609	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	233	609	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	128	346	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924330	112924330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	278	855	0	ENST00000351677.2:c.1276C>T	p.His426Tyr	p.H426Y	ENST00000351677	NM_002834.3	426	Cac/Tac																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	158	482	0	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																														
AR	367	MSKCC	GRCh37	X	66941766	66941766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	186	543	0	ENST00000374690.3:c.2410G>A	p.Glu804Lys	p.E804K	ENST00000374690	NM_000044.3	804	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467663	50467663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	146	568	0	ENST00000331340.3:c.898G>A	p.Glu300Lys	p.E300K	ENST00000331340	NM_006060.4	300	Gag/Aag																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233094	69233094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	81	310	0	ENST00000462284.1:c.959C>T	p.Pro320Leu	p.P320L	ENST00000462284	NM_002392.5	320	cCc/cTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244913	123244913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	232	845	2	ENST00000358487.5:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000358487	NM_000141.4	731	Gaa/Aaa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78921067	78921067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	232	660	0	ENST00000306801.3:c.3181C>T	p.His1061Tyr	p.H1061Y	ENST00000306801	NM_020761.2	1061	Cac/Tac																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	142	353	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066482	94066482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	68	313	0	ENST00000369303.4:c.1277G>A	p.Arg426Gln	p.R426Q	ENST00000369303	NM_004440.3	426	cGa/cAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	233	609	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29576033	29576033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	107	379	0	ENST00000358273.4:c.4006C>T	p.Gln1336Ter	p.Q1336*	ENST00000358273	NM_001042492.2	1336	Cag/Tag																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649565	206649565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	227	685	0	ENST00000367120.3:c.400C>T	p.Arg134Cys	p.R134C	ENST00000367120	NM_014002.3	134	Cgc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733337	40733337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	134	436	0	ENST00000373198.4:c.3469G>A	p.Asp1157Asn	p.D1157N	ENST00000373198	NM_133170.3	1157	Gat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390191	89390191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	105	298	0	ENST00000336596.2:c.940G>A	p.Asp314Asn	p.D314N	ENST00000336596	NM_005233.5	314	Gac/Aac																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978703	70978703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	173	583	1	ENST00000276594.2:c.950G>A	p.Gly317Glu	p.G317E	ENST00000276594	NM_024504.3	317	gGa/gAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005924	69005924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	145	495	0	ENST00000288368.4:c.2335G>A	p.Glu779Lys	p.E779K	ENST00000288368	NM_024870.2	779	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242451	55242451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	132	422	1	ENST00000275493.2:c.2221C>T	p.Pro741Ser	p.P741S	ENST00000275493	NM_005228.3	741	Ccc/Tcc																																																																														
TP63	8626	MSKCC	GRCh37	3	189590736	189590736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	308	499	2	ENST00000264731.3:c.1301C>T	p.Thr434Met	p.T434M	ENST00000264731	NM_003722.4	434	aCg/aTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2978383	2978383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	270	1023	0	ENST00000396946.4:c.947G>A	p.Arg316Lys	p.R316K	ENST00000396946	NM_032415.4	316	aGg/aAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069604	69069604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	117	348	0	ENST00000288368.4:c.4279G>A	p.Glu1427Lys	p.E1427K	ENST00000288368	NM_024870.2	1427	Gaa/Aaa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946090	13946090	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	112	326	0	ENST00000405192.2:c.1006C>T	p.Arg336Ter	p.R336*	ENST00000405192	NM_001163147.1	336	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224393	36224393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	385	1174	0	ENST00000222270.7:c.6943G>A	p.Gly2315Arg	p.G2315R	ENST00000222270	NM_014727.1	2315	Ggg/Agg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960059	134960059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	232	685	0	ENST00000398015.3:c.2416G>A	p.Asp806Asn	p.D806N	ENST00000398015	NM_004441.4	806	Gac/Aac																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073374	8073374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	159	473	0	ENST00000377482.5:c.1285G>A	p.Asp429Asn	p.D429N	ENST00000377482	NM_018948.3	429	Gac/Aac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256141	16256141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	158	433	0	ENST00000375759.3:c.3406C>T	p.Leu1136Phe	p.L1136F	ENST00000375759	NM_015001.2	1136	Ctt/Ttt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101349	27101349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	230	935	0	ENST00000324856.7:c.4631C>T	p.Ser1544Leu	p.S1544L	ENST00000324856	NM_006015.4	1544	tCg/tTg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310445	65310445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	135	430	0	ENST00000342505.4:c.2243C>T	p.Ser748Phe	p.S748F	ENST00000342505	NM_002227.2	748	tCt/tTt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65312385	65312385	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	41	565	0	ENST00000342505.4:c.1934T>C	p.Val645Ala	p.V645A	ENST00000342505	NM_002227.2	645	gTc/gCc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729766	162729766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	161	547	0	ENST00000367921.3:c.852G>A	p.Met284Ile	p.M284I	ENST00000367921	NM_006182.2	284	atG/atA																																																																														
CDC73	79577	MSKCC	GRCh37	1	193091400	193091400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	167	499	1	ENST00000367435.3:c.70G>A	p.Glu24Lys	p.E24K	ENST00000367435	NM_024529.4	24	Gaa/Aaa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983100	201983100	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	187	706	0	ENST00000359651.3:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000359651		317	Caa/Taa																																																																														
PGR	5241	MSKCC	GRCh37	11	100996788	100996788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	111	436	0	ENST00000325455.5:c.1739G>A	p.Gly580Asp	p.G580D	ENST00000325455	NM_001202474.3	580	gGt/gAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656215	18656215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	93	301	0	ENST00000266497.5:c.2894G>A	p.Gly965Glu	p.G965E	ENST00000266497		965	gGa/gAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246389	46246389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	105	332	0	ENST00000334344.6:c.4483C>T	p.His1495Tyr	p.H1495Y	ENST00000334344	NM_152641.2	1495	Cat/Tat																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885160	111885161	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	184	729	1	ENST00000341259.2:c.1048_1049delinsTT	p.Pro350Leu	p.P350L	ENST00000341259	NM_005475.2	350	CCg/TTg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112910824	112910824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	133	340	0	ENST00000351677.2:c.833G>A	p.Arg278Lys	p.R278K	ENST00000351677	NM_002834.3	278	aGa/aAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133209285	133209285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	287	944	0	ENST00000320574.5:c.6101C>T	p.Ser2034Phe	p.S2034F	ENST00000320574	NM_006231.2	2034	tCc/tTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48881542	48881543	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	52	192	0	ENST00000267163.4:c.264_264+1delinsAA		p.X88_splice	ENST00000267163	NM_000321.2	88																																																																															
MGA	23269	MSKCC	GRCh37	15	42057257	42057258	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	144	377	0	ENST00000219905.7:c.7918_7919delinsTT	p.Pro2640Leu	p.P2640L	ENST00000219905	NM_001164273.1	2640	CCa/TTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779608	3779608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	341	1159	1	ENST00000262367.5:c.5440G>A	p.Gly1814Arg	p.G1814R	ENST00000262367	NM_004380.2	1814	Ggg/Agg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916145	9916145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	141	473	0	ENST00000330684.3:c.2144A>G	p.Asp715Gly	p.D715G	ENST00000330684	NM_001134407.1	715	gAc/gGc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7989475	7989475	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	248	796	0	ENST00000319144.4:c.211A>G	p.Lys71Glu	p.K71E	ENST00000319144	NM_001139.2	71	Aaa/Gaa																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732457	74732457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	131	407	2	ENST00000359995.5:c.452C>T	p.Ser151Phe	p.S151F	ENST00000359995	NM_001195427.1	151	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5211766	5211766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	220	738	1	ENST00000357368.4:c.5069C>T	p.Ser1690Phe	p.S1690F	ENST00000357368	NM_002850.3	1690	tCc/tTc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11024651	11024652	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	144	615	1	ENST00000327064.4:c.768_769delinsAA	p.Glu257Lys	p.E257K	ENST00000327064	NM_199141.1	256	tcGGag/tcAAag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214722	36214722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	206	790	0	ENST00000222270.7:c.3148G>A	p.Gly1050Arg	p.G1050R	ENST00000222270	NM_014727.1	1050	Gga/Aga																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082277	16082277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	344	1162	0	ENST00000281043.3:c.91G>A	p.Asp31Asn	p.D31N	ENST00000281043	NM_005378.4	31	Gac/Aac																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715308	61715308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	190	568	0	ENST00000401558.2:c.2305C>T	p.Pro769Ser	p.P769S	ENST00000401558	NM_003400.3	769	Cca/Tca																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661861	227661862	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	285	894	1	ENST00000305123.5:c.1593_1594delinsTT	p.Pro532Ser	p.P532S	ENST00000305123	NM_005544.2	531	tcCCct/tcTTct																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277903	41277903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	128	390	0	ENST00000349496.5:c.1867C>A	p.Gln623Lys	p.Q623K	ENST00000349496	NM_001904.3	623	Cag/Aag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361250	66361250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	80	284	0	ENST00000273854.3:c.922G>A	p.Gly308Arg	p.G308R	ENST00000273854	NM_004439.5	308	Ggg/Agg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510101	187510101	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	129	446	0	ENST00000441802.2:c.13412C>G	p.Ala4471Gly	p.A4471G	ENST00000441802	NM_005245.3	4471	gCg/gGg																																																																														
SYK	6850	MSKCC	GRCh37	9	93607755	93607755	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	94	284	1	ENST00000375746.1:c.457C>T	p.Gln153Ter	p.Q153*	ENST00000375746	NM_001174167.1	153	Cag/Tag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950037	44950037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	159	473	0	ENST00000377967.4:c.3806C>T	p.Pro1269Leu	p.P1269L	ENST00000377967	NM_021140.2	1269	cCc/cTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409775	63409775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	132	487	0	ENST00000330258.3:c.3392G>A	p.Gly1131Glu	p.G1131E	ENST00000330258	NM_152424.3	1131	gGa/gAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76845361	76845361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	101	269	0	ENST00000373344.5:c.6160C>T	p.Leu2054Phe	p.L2054F	ENST00000373344	NM_000489.3	2054	Ctt/Ttt																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123499672	123499672	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	125	486	0	ENST00000371139.4:c.199G>A	p.Glu67Lys	p.E67K	ENST00000371139	NM_001114937.2	67	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	73	657	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106078	27106078	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	44	499	0	ENST00000324856.7:c.5693delC	p.Pro1898HisfsTer25	p.P1898Hfs*25	ENST00000324856	NM_006015.4	1897	Ccc/cc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	86	827	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5207955	5207955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	63	914	0	ENST00000357368.4:c.5756G>A	p.Arg1919Gln	p.R1919Q	ENST00000357368	NM_002850.3	1919	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	36	410	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656951	47656951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	26	262	0	ENST00000233146.2:c.1147C>T	p.Arg383Ter	p.R383*	ENST00000233146	NM_000251.2	383	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	36	356	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448307	56448307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	73	803	4	ENST00000407977.2:c.340C>T	p.Arg114Trp	p.R114W	ENST00000407977		114	Cgg/Tgg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855573	45855573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs746618110		P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	65	798	1	ENST00000391945.4:c.2084G>A	p.Arg695His	p.R695H	ENST00000391945	NM_000400.3	695	cGc/cAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413105	63413105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	86	423	1	ENST00000330258.3:c.62G>A	p.Arg21His	p.R21H	ENST00000330258	NM_152424.3	21	cGt/cAt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911508	134911508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201816783		P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	37	503	1	ENST00000398015.3:c.1973C>T	p.Ser658Leu	p.S658L	ENST00000398015	NM_004441.4	658	tCg/tTg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66782062	66782062	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	25	243	1	ENST00000307102.5:c.1034del	p.Asn345ThrfsTer8	p.N345Tfs*8	ENST00000307102	NM_002755.3	343	atA/at																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18699324	18699324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	20	231	0	ENST00000266497.5:c.3425G>A	p.Arg1142His	p.R1142H	ENST00000266497		1142	cGt/cAt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962378	2962378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	56	710	0	ENST00000396946.4:c.2159G>A	p.Arg720Gln	p.R720Q	ENST00000396946	NM_032415.4	720	cGa/cAa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284906	15284906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1424	83	984	3	ENST00000263388.2:c.4709G>A	p.Arg1570His	p.R1570H	ENST00000263388	NM_000435.2	1570	cGt/cAt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31385105	31385105	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	56	613	1	ENST00000328111.2:c.1490G>A	p.Arg497Gln	p.R497Q	ENST00000328111	NM_006892.3	497	cGg/cAg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932807	39932807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	74	442	0	ENST00000378444.4:c.1792G>A	p.Val598Met	p.V598M	ENST00000378444	NM_001123385.1	598	Gtg/Atg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5265144	5265144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	65	961	2	ENST00000357368.4:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000357368	NM_002850.3	148	cGg/cAg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191047	2191047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	35	495	2	ENST00000398665.3:c.301C>T	p.Arg101Trp	p.R101W	ENST00000398665	NM_032482.2	101	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52705261	52705261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	47	468	1	ENST00000322088.6:c.143G>A	p.Arg48Gln	p.R48Q	ENST00000322088	NM_014225.5	48	cGa/cAa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87636257	87636257	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	40	584	1	ENST00000277120.3:c.2422C>T	p.Arg808Ter	p.R808*	ENST00000277120		808	Cga/Tga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931700	39931700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	52	337	1	ENST00000378444.4:c.2899G>A	p.Ala967Thr	p.A967T	ENST00000378444	NM_001123385.1	967	Gcc/Acc																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260145	149260145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200641813		P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	40	463	0	ENST00000360632.3:c.748C>T	p.Arg250Cys	p.R250C	ENST00000360632	NM_015472.4	250	Cgc/Tgc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246078852	246078852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150058397		P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	57	613	0	ENST00000388985.4:c.793C>T	p.Arg265Cys	p.R265C	ENST00000388985		265	Cgt/Tgt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945585	71945585	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	38	426	0	ENST00000298229.2:c.2343del	p.Phe781LeufsTer64	p.F781Lfs*64	ENST00000298229	NM_001567.3	781	Ttt/tt																																																																														
MGA	23269	MSKCC	GRCh37	15	42032339	42032339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	51	444	2	ENST00000219905.7:c.4523G>A	p.Gly1508Asp	p.G1508D	ENST00000219905	NM_001164273.1	1508	gGc/gAc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119736	17119737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	61	823	0	ENST00000285071.4:c.1257dup	p.Leu420AlafsTer36	p.L420Afs*36	ENST00000285071	NM_144997.5	419	-/G																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231392	5231392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	56	906	0	ENST00000357368.4:c.2084C>T	p.Thr695Met	p.T695M	ENST00000357368	NM_002850.3	695	aCg/aTg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279616	18279616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	63	820	0	ENST00000222254.8:c.1889C>T	p.Thr630Met	p.T630M	ENST00000222254	NM_005027.3	630	aCg/aTg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637384	47637384	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	61	619	0	ENST00000233146.2:c.518T>A	p.Leu173Gln	p.L173Q	ENST00000233146	NM_000251.2	173	cTa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112177641	112177641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	23	275	0	ENST00000257430.4:c.6350A>G	p.Gln2117Arg	p.Q2117R	ENST00000257430	NM_000038.5	2117	cAa/cGa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026723	6026723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	54	628	0	ENST00000265849.7:c.1673C>T	p.Thr558Ile	p.T558I	ENST00000265849	NM_000535.5	558	aCc/aTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395282	139395282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	92	913	0	ENST00000277541.6:c.5656A>G	p.Met1886Val	p.M1886V	ENST00000277541	NM_017617.3	1886	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	115	351	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519324	176519324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	137	794	0	ENST00000292408.4:c.730C>T	p.Arg244Trp	p.R244W	ENST00000292408	NM_213647.1	244	Cgg/Tgg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223957	2223957	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	151	1013	0	ENST00000326181.6:c.1171A>G	p.Thr391Ala	p.T391A	ENST00000326181	NM_032271.2	391	Acc/Gcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	19	300	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	34	607	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970905	21970905	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	35	834	0	ENST00000304494.5:c.453del	p.Ser152GlnfsTer41	p.S152Qfs*41	ENST00000304494	NM_000077.4	151	ccC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970905	21970905	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	35	834	0	ENST00000304494.5:c.453del	p.Ser152GlnfsTer41	p.S152Qfs*41	ENST00000304494	NM_000077.4	151	ccC/cc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	101	322	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	108	813	0	ENST00000304494.5:c.387C>G	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	108	813	0	ENST00000304494.5:c.387C>G	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taG																																																																														
MGA	23269	MSKCC	GRCh37	15	42019596	42019615	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATCCTGTGGTAAGTCTGGA	AATCCTGTGGTAAGTCTGGA	-			P-0048285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	40	345	0	ENST00000219905.7:c.3650_3657+12del		p.X1217_splice	ENST00000219905	NM_001164273.1	1217																																																																															
ATRX	546	MSKCC	GRCh37	X	76764065	76764066	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0048285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	54	447	0	ENST00000373344.5:c.7242_7243delinsAA	p.Gln2415Lys	p.Q2415K	ENST00000373344	NM_000489.3	2414	ctCCag/ctAAag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	40	481	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152098	11152098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	43	448	0	ENST00000344626.4:c.4286G>A	p.Arg1429His	p.R1429H	ENST00000344626	NM_003072.3	1429	cGc/cAc																																																																														
NF2	4771	MSKCC	GRCh37	22	30050677	30050677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	182	398	0	ENST00000338641.4:c.479G>A	p.Arg160Gln	p.R160Q	ENST00000338641	NM_000268.3	160	cGg/cAg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851680	63851680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	197	506	1	ENST00000279873.7:c.2458C>T	p.Pro820Ser	p.P820S	ENST00000279873	NM_032199.2	820	Ccc/Tcc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998801	100998801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	142	966	0	ENST00000325455.5:c.1001G>T	p.Gly334Val	p.G334V	ENST00000325455	NM_001202474.3	334	gGg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	68	317	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	65	209	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	102	242	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	368	795	4	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	363	663	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438317	110438322	+	inframe_deletion	In_Frame_Del	DEL	GTTGTT	GTTGTT	-			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	101	223	1	ENST00000375856.3:c.79_84del	p.Asn27_Asn28del	p.N27_N28del	ENST00000375856	NM_003749.2	27	AACAAC/-																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56183339	56183339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	150	321	0	ENST00000399503.3:c.4249G>A	p.Ala1417Thr	p.A1417T	ENST00000399503	NM_005921.1	1417	Gca/Aca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	205	418	3	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	145	341	1	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200026	138200026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	266	461	0	ENST00000237289.4:c.1444G>A	p.Gly482Ser	p.G482S	ENST00000237289	NM_001270507.1	482	Ggc/Agc																																																																														
CIC	23152	MSKCC	GRCh37	19	42797780	42797780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	425	820	1	ENST00000575354.2:c.3832G>A	p.Val1278Ile	p.V1278I	ENST00000575354	NM_015125.3	1278	Gtc/Atc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	340	671	0	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																																																														
MGA	23269	MSKCC	GRCh37	15	42052633	42052633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	204	380	0	ENST00000219905.7:c.7304G>A	p.Arg2435Gln	p.R2435Q	ENST00000219905	NM_001164273.1	2435	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	434	903	6	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	411	957	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41274910	41274910	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	123	335	0	ENST00000349496.5:c.1160A>G	p.Asn387Ser	p.N387S	ENST00000349496	NM_001904.3	387	aAt/aGt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256250	41256251	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	91	252	0	ENST00000357654.3:c.329dup	p.Glu111GlyfsTer3	p.E111Gfs*3	ENST00000357654	NM_007294.3	110	aag/aaAg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056089	26056089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	188	428	0	ENST00000343677.2:c.568G>A	p.Ala190Thr	p.A190T	ENST00000343677	NM_005319.3	190	Gct/Act																																																																														
ATRX	546	MSKCC	GRCh37	X	76937744	76937745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	21	345	0	ENST00000373344.5:c.3003dup	p.Val1002SerfsTer3	p.V1002Sfs*3	ENST00000373344	NM_000489.3	1001	-/A																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859609	57859610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	247	580	1	ENST00000228682.2:c.671_672dup	p.Glu225ArgfsTer56	p.E225Rfs*56	ENST00000228682	NM_005269.2	221	-/GA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380309	25380309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	120	302	0	ENST00000256078.4:c.149C>T	p.Thr50Ile	p.T50I	ENST00000256078	NM_033360.2	50	aCc/aTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427228	49427228	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	275	800	0	ENST00000301067.7:c.11260C>T	p.Gln3754Ter	p.Q3754*	ENST00000301067	NM_003482.3	3754	Cag/Tag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909490	50909490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	459	848	2	ENST00000440232.2:c.1294C>T	p.Arg432Trp	p.R432W	ENST00000440232	NM_002691.3	432	Cgg/Tgg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246091256	246091256	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	256	383	1	ENST00000388985.4:c.679C>T	p.Arg227Ter	p.R227*	ENST00000388985		227	Cga/Tga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137793	64137793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	528	1103	2	ENST00000334205.4:c.1894C>T	p.Arg632Cys	p.R632C	ENST00000334205	NM_003942.2	632	Cgc/Tgc																																																																														
YAP1	10413	MSKCC	GRCh37	11	102098250	102098250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	157	431	0	ENST00000282441.5:c.1214G>A	p.Ser405Asn	p.S405N	ENST00000282441	NM_001130145.2	405	aGc/aAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343756	118343756	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	155	392	0	ENST00000534358.1:c.1882G>T	p.Glu628Ter	p.E628*	ENST00000534358	NM_005933.3	628	Gag/Tag																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811738	102811738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	256	617	0	ENST00000307046.8:c.446G>T	p.Arg149Met	p.R149M	ENST00000307046	NM_001111285.1	149	aGg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220186	36220186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	593	609	0	ENST00000222270.7:c.4906G>A	p.Gly1636Arg	p.G1636R	ENST00000222270	NM_014727.1	1636	Ggg/Agg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163452	47163452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	67	252	0	ENST00000409792.3:c.2674G>A	p.Val892Met	p.V892M	ENST00000409792	NM_014159.6	892	Gtg/Atg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515283	31515283	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	222	543	0	ENST00000344624.3:c.1102G>T	p.Glu368Ter	p.E368*	ENST00000344624		368	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	299	317	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			736	21	122	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6048638	6048638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	217	245	0	ENST00000265849.7:c.13G>A	p.Glu5Lys	p.E5K	ENST00000265849	NM_000535.5	5	Gag/Aag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610136	10610136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			823	173	255	0	ENST00000171111.5:c.574G>T	p.Glu192Ter	p.E192*	ENST00000171111	NM_203500.1	192	Gag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174420	11174420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			739	72	226	0	ENST00000361445.4:c.7255G>A	p.Glu2419Lys	p.E2419K	ENST00000361445	NM_004958.3	2419	Gaa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142222289	142222289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			434	51	71	0	ENST00000350721.4:c.5203C>G	p.His1735Asp	p.H1735D	ENST00000350721	NM_001184.3	1735	Cat/Gat																																																																														
AKT3	10000	MSKCC	GRCh37	1	243736239	243736239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			381	27	100	0	ENST00000263826.5:c.808C>A	p.Arg270Ser	p.R270S	ENST00000263826	NM_005465.4	270	Cgt/Agt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58701022	58701022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			670	201	150	0	ENST00000305921.3:c.613G>A	p.Asp205Asn	p.D205N	ENST00000305921	NM_003620.3	205	Gat/Aat																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366198	15366198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			778	90	218	0	ENST00000263377.2:c.1957G>A	p.Glu653Lys	p.E653K	ENST00000263377	NM_058243.2	653	Gaa/Aaa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753824	42753824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1358	87	329	0	ENST00000222329.4:c.440C>T	p.Ser147Leu	p.S147L	ENST00000222329	NM_006494.2	147	tCa/tTa																																																																														
PAK7	0	MSKCC	GRCh37	20	9523302	9523302	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			633	60	173	0	ENST00000353224.5:c.1935T>A	p.Asn645Lys	p.N645K	ENST00000353224	NM_177990.2	645	aaT/aaA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714369	40714369	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			473	135	131	0	ENST00000373198.4:c.4028G>T	p.Arg1343Leu	p.R1343L	ENST00000373198	NM_133170.3	1343	cGg/cTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52685805	52685805	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			504	27	90	0	ENST00000394830.3:c.667A>G	p.Ile223Val	p.I223V	ENST00000394830	NM_018313.4	223	Ata/Gta																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146457	185146457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			477	43	131	0	ENST00000265026.3:c.88G>C	p.Glu30Gln	p.E30Q	ENST00000265026	NM_004721.4	30	Gag/Cag																																																																														
MSH3	4437	MSKCC	GRCh37	5	80168964	80168964	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			944	59	222	0	ENST00000265081.6:c.3160A>T	p.Thr1054Ser	p.T1054S	ENST00000265081	NM_002439.4	1054	Acc/Tcc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517606	176517606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	281	330	0	ENST00000292408.4:c.307G>T	p.Ala103Ser	p.A103S	ENST00000292408	NM_213647.1	103	Gca/Tca																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912352	29912352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	79	257	0	ENST00000376809.5:c.971G>C	p.Gly324Ala	p.G324A	ENST00000376809	NM_002116.7	324	gGa/gCa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739621	41739621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			602	98	138	0	ENST00000242208.4:c.352G>C	p.Glu118Gln	p.E118Q	ENST00000242208	NM_002192.2	118	Gag/Cag																																																																														
SMO	6608	MSKCC	GRCh37	7	128846380	128846380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			867	165	236	0	ENST00000249373.3:c.1216G>T	p.Ala406Ser	p.A406S	ENST00000249373	NM_005631.4	406	Gcc/Tcc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525841	148525841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			402	31	66	0	ENST00000320356.2:c.616C>T	p.His206Tyr	p.H206Y	ENST00000320356	NM_004456.4	206	Cac/Tac																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412488	63412488	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023366-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			388	127	139	0	ENST00000330258.3:c.679G>T	p.Glu227Ter	p.E227*	ENST00000330258	NM_152424.3	227	Gaa/Taa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716212	52716212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	194	748	0	ENST00000322088.6:c.656C>T	p.Ser219Leu	p.S219L	ENST00000322088	NM_014225.5	219	tCg/tTg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513268	44513268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			790	268	827	0	ENST00000291552.4:c.667G>A	p.Gly223Arg	p.G223R	ENST00000291552	NM_006758.2	223	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045036-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	33	285	0				ENST00000310581	NM_198253.2																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101911535	101911535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045036-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	59	318	0	ENST00000374994.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000374994	NM_004612.2	487	cGg/cAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261011	16261011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045036-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	83	544	0	ENST00000375759.3:c.8276C>T	p.Thr2759Met	p.T2759M	ENST00000375759	NM_015001.2	2759	aCg/aTg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984398	201984399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0045036-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	160	618	0	ENST00000359651.3:c.1064_1065dup	p.Lys356AlafsTer92	p.K356Afs*92	ENST00000359651		355	ggc/gGCgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786674	3786674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045036-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	87	579	1	ENST00000262367.5:c.4537G>A	p.Glu1513Lys	p.E1513K	ENST00000262367	NM_004380.2	1513	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786790	3786790	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045036-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	36	385	0	ENST00000262367.5:c.4421G>C	p.Cys1474Ser	p.C1474S	ENST00000262367	NM_004380.2	1474	tGt/tCt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711880	89711881	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACT			P-0046494-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	97	373	0	ENST00000371953.3:c.500_502dup	p.Thr167dup	p.T167dup	ENST00000371953	NM_000314.4	167	-/ACT																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274753	123274753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046494-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	70	605	0	ENST00000358487.5:c.1165G>A	p.Ala389Thr	p.A389T	ENST00000358487	NM_000141.4	389	Gcc/Acc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721757	176721757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046494-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	122	510	0	ENST00000439151.2:c.7388C>T	p.Pro2463Leu	p.P2463L	ENST00000439151	NM_022455.4	2463	cCt/cTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166839	32166839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046494-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			808	567	1120	0	ENST00000375023.3:c.4399G>A	p.Val1467Ile	p.V1467I	ENST00000375023	NM_004557.3	1467	Gtc/Atc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046494-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	95	331	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	1039	1066	15	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430276	181430276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	277	558	3	ENST00000325404.1:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000325404	NM_003106.3	43	cGg/cAg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670720	86670720	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	40	114	0	ENST00000274376.6:c.1998A>C	p.Lys666Asn	p.K666N	ENST00000274376	NM_002890.2	666	aaA/aaC																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166743	32166743	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1263	519	1084	9	ENST00000375023.3:c.4495C>T	p.Arg1499Ter	p.R1499*	ENST00000375023	NM_004557.3	1499	Cga/Tga																																																																														
PARK2	0	MSKCC	GRCh37	6	162683772	162683772	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	109	548	0	ENST00000366898.1:c.197T>C	p.Ile66Thr	p.I66T	ENST00000366898	NM_004562.2	66	aTt/aCt																																																																														
PARK2	0	MSKCC	GRCh37	6	162683788	162683788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	92	482	0	ENST00000366898.1:c.181C>A	p.Leu61Met	p.L61M	ENST00000366898	NM_004562.2	61	Ctg/Atg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874616	151874616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	163	410	0	ENST00000262189.6:c.7922C>T	p.Ser2641Leu	p.S2641L	ENST00000262189	NM_170606.2	2641	tCa/tTa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635279	87635279	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	200	565	2	ENST00000277120.3:c.2331G>T	p.Glu777Asp	p.E777D	ENST00000277120		777	gaG/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577573	7577573	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	259	680	0	ENST00000269305.4:c.708C>G	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taC/taG																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793382	18793382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs77070108		P-0047763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	91	340	3	ENST00000266497.5:c.4079C>T	p.Ala1360Val	p.A1360V	ENST00000266497		1360	gCg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878988	151878988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138373177		P-0047763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	81	509	0	ENST00000262189.6:c.5957G>A	p.Arg1986Gln	p.R1986Q	ENST00000262189	NM_170606.2	1986	cGg/cAg																																																																														
PGR	5241	MSKCC	GRCh37	11	100999191	100999191	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	427	1204	0	ENST00000325455.5:c.611A>C	p.His204Pro	p.H204P	ENST00000325455	NM_001202474.3	204	cAc/cCc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749373	41749373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	67	401	0	ENST00000226382.2:c.422G>A	p.Arg141Gln	p.R141Q	ENST00000226382	NM_003924.3	141	cGa/cAa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739820	46739820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	78	313	1	ENST00000371975.4:c.1621G>A	p.Val541Ile	p.V541I	ENST00000371975	NM_003579.3	541	Gtc/Atc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	76	291	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685288	89685289	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	28	152	0	ENST00000371953.3:c.188dupA	p.Asn63LysfsTer11	p.N63Kfs*11	ENST00000371953	NM_000314.4	61	-/A																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	19	268	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	85	295	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	56	205	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953022	2953022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	118	790	1	ENST00000396946.4:c.2918G>A	p.Arg973His	p.R973H	ENST00000396946	NM_032415.4	973	cGc/cAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	12	267	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290214	15290214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	220	859	1	ENST00000263388.2:c.3421G>A	p.Val1141Met	p.V1141M	ENST00000263388	NM_000435.2	1141	Gtg/Atg																																																																														
INSR	3643	MSKCC	GRCh37	19	7267410	7267410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	148	398	0	ENST00000302850.5:c.598G>A	p.Val200Ile	p.V200I	ENST00000302850	NM_000208.2	200	Gtc/Atc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841258	15841258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	189	481	0	ENST00000307771.7:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000307771	NM_005089.3	448	Cgc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801148	1801148	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199968400		P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	232	1049	3	ENST00000260795.2:c.277C>T	p.Arg93Trp	p.R93W	ENST00000260795		93	Cgg/Tgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597373	10597373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	191	686	0	ENST00000171111.5:c.1830G>A	p.Met610Ile	p.M610I	ENST00000171111	NM_203500.1	610	atG/atA																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072537	5072537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	49	260	0	ENST00000381652.3:c.1687G>A	p.Val563Ile	p.V563I	ENST00000381652	NM_004972.3	563	Gta/Ata																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026792	48026793	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	64	286	0	ENST00000234420.5:c.1675_1676del	p.Cys559LeufsTer3	p.C559Lfs*3	ENST00000234420	NM_000179.2	557	gGT/g																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	122	416	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1279530	1279530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	74	959	0	ENST00000310581.5:c.2006G>A	p.Arg669Gln	p.R669Q	ENST00000310581	NM_198253.2	669	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443634	49443634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112921115		P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	134	645	0	ENST00000301067.7:c.3737C>T	p.Thr1246Met	p.T1246M	ENST00000301067	NM_003482.3	1246	aCg/aTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45858976	45858976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	163	534	0	ENST00000391945.4:c.1490G>A	p.Arg497His	p.R497H	ENST00000391945	NM_000400.3	497	cGt/cAt																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281768	49281768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148425155		P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	177	631	0	ENST00000282018.3:c.815C>T	p.Thr272Met	p.T272M	ENST00000282018	NM_020377.2	272	aCg/aTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524949	8524949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	74	236	1	ENST00000356435.5:c.655G>A	p.Ala219Thr	p.A219T	ENST00000356435		219	Gct/Act																																																																														
MST1	4485	MSKCC	GRCh37	3	49725085	49725085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	169	804	0	ENST00000449682.2:c.259G>A	p.Val87Met	p.V87M	ENST00000449682	NM_020998.3	87	Gtg/Atg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816544	32816544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	230	725	0	ENST00000354258.4:c.1631G>A	p.Arg544His	p.R544H	ENST00000354258	NM_000593.5	544	cGc/cAc																																																																														
RFWD2	0	MSKCC	GRCh37	1	175958497	175958497	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	57	236	0	ENST00000367669.3:c.1847+1G>A		p.X616_splice	ENST00000367669	NM_022457.5	616																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405911	157405911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	127	450	0	ENST00000346085.5:c.2153C>T	p.Ser718Leu	p.S718L	ENST00000346085	NM_020732.3	718	tCg/tTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562493	21562493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	18	114	0	ENST00000382592.4:c.1426G>A	p.Ala476Thr	p.A476T	ENST00000382592	NM_014572.2	476	Gcc/Acc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130259	2130259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	248	973	1	ENST00000219476.3:c.3491C>T	p.Ala1164Val	p.A1164V	ENST00000219476	NM_000548.3	1164	gCg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974726	21974726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	94	367	1	ENST00000304494.5:c.101C>T	p.Ala34Val	p.A34V	ENST00000304494	NM_000077.4	34	gCg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974726	21974726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	94	367	1	ENST00000304494.5:c.101C>T	p.Ala34Val	p.A34V	ENST00000304494	NM_000077.4	34	gCg/gTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106155594	106155594	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	59	255	0	ENST00000380013.4:c.499del	p.Ser167GlnfsTer16	p.S167Qfs*16	ENST00000380013	NM_001127208.2	165	agT/ag																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028656	12028656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	53	240	0	ENST00000353533.5:c.859C>T	p.Arg287Cys	p.R287C	ENST00000353533	NM_003010.3	287	Cgc/Tgc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39709872	39709872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	20	105	0	ENST00000361337.2:c.499G>A	p.Glu167Lys	p.E167K	ENST00000361337	NM_003286.2	167	Gaa/Aaa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112302	115112302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	103	267	0	ENST00000257566.3:c.1438G>A	p.Ala480Thr	p.A480T	ENST00000257566	NM_016569.3	480	Gcg/Acg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78433352	78433352	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	52	226	0	ENST00000370768.2:c.251-2A>G		p.X84_splice	ENST00000370768	NM_003902.3	84																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982164	201982164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs144239428		P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	159	721	0	ENST00000359651.3:c.688G>A	p.Asp230Asn	p.D230N	ENST00000359651		230	Gat/Aat																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17743013	17743013	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	209	849	0	ENST00000250003.3:c.921C>A	p.Cys307Ter	p.C307*	ENST00000250003	NM_002478.4	307	tgC/tgA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118355596	118355596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	38	334	0	ENST00000534358.1:c.4238A>G	p.Asn1413Ser	p.N1413S	ENST00000534358	NM_005933.3	1413	aAt/aGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435269	49435269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	221	878	1	ENST00000301067.7:c.6284G>A	p.Arg2095His	p.R2095H	ENST00000301067	NM_003482.3	2095	cGt/cAt																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480663	50480663	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	63	173	0	ENST00000394963.4:c.531+2T>C		p.X177_splice	ENST00000394963	NM_003076.4	177																																																																															
POLE	5426	MSKCC	GRCh37	12	133226040	133226040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	209	762	0	ENST00000320574.5:c.3857G>A	p.Arg1286His	p.R1286H	ENST00000320574	NM_006231.2	1286	cGc/cAc																																																																														
MGA	23269	MSKCC	GRCh37	15	41988982	41988982	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	77	297	0	ENST00000219905.7:c.1774A>T	p.Lys592Ter	p.K592*	ENST00000219905	NM_001164273.1	592	Aag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993164	72993164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	56	694	1	ENST00000268489.5:c.881T>C	p.Val294Ala	p.V294A	ENST00000268489	NM_006885.3	294	gTc/gCc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7976160	7976160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	163	639	0	ENST00000319144.4:c.2035C>T	p.Arg679Cys	p.R679C	ENST00000319144	NM_001139.2	679	Cgc/Tgc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872067	37872067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	221	862	0	ENST00000269571.5:c.1388G>A	p.Ser463Asn	p.S463N	ENST00000269571		463	aGt/aAt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610258	10610258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	163	808	1	ENST00000171111.5:c.452G>T	p.Cys151Phe	p.C151F	ENST00000171111	NM_203500.1	151	tGt/tTt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026919	48026919	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	58	247	0	ENST00000234420.5:c.1799del	p.Asn600IlefsTer10	p.N600Ifs*10	ENST00000234420	NM_000179.2	599	ggA/gg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932635	49932635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	149	676	1	ENST00000296474.3:c.3236G>A	p.Arg1079Gln	p.R1079Q	ENST00000296474	NM_002447.2	1079	cGg/cAg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960059	134960059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	178	508	0	ENST00000398015.3:c.2416G>A	p.Asp806Asn	p.D806N	ENST00000398015	NM_004441.4	806	Gac/Aac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589160	67589160	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	36	190	0	ENST00000274335.5:c.1148T>A	p.Ile383Lys	p.I383K	ENST00000274335		383	aTa/aAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590974	67590974	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	15	99	0	ENST00000274335.5:c.1569-2A>T		p.X523_splice	ENST00000274335		523																																																																															
HIST1H2BD	3017	MSKCC	GRCh37	6	26158563	26158563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	45	524	0	ENST00000289316.2:c.166T>C	p.Ser56Pro	p.S56P	ENST00000289316	NM_138720.2	56	Tct/Cct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391908	139391908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	242	1122	2	ENST00000277541.6:c.6283C>T	p.Arg2095Cys	p.R2095C	ENST00000277541	NM_017617.3	2095	Cgc/Tgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922074	39922074	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	191	669	0	ENST00000378444.4:c.4098A>T	p.Lys1366Asn	p.K1366N	ENST00000378444	NM_001123385.1	1366	aaA/aaT																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220135	5220135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	44	635	0	ENST00000357368.4:c.3580C>T	p.Arg1194Cys	p.R1194C	ENST00000357368	NM_002850.3	1194	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	158	780	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	61	338	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	154	614	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	161	768	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	42	231	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	215	1106	2	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																														
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	75	303	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039371	47039371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	163	717	0	ENST00000329236.7:c.763C>T	p.Arg255Cys	p.R255C	ENST00000329236	NM_001204466.1	255	Cgc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	166	423	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	159	632	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	79	422	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29528154	29528154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	92	468	0	ENST00000358273.4:c.1162C>A	p.Pro388Thr	p.P388T	ENST00000358273	NM_001042492.2	388	Cct/Act																																																																														
MED12	9968	MSKCC	GRCh37	X	70354597	70354597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	92	476	0	ENST00000374080.3:c.4762G>A	p.Val1588Met	p.V1588M	ENST00000374080		1588	Gtg/Atg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63760023	63760023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	72	270	0	ENST00000279873.7:c.676C>T	p.Arg226Trp	p.R226W	ENST00000279873	NM_032199.2	226	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108205807	108205807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	54	286	0	ENST00000278616.4:c.8122G>A	p.Asp2708Asn	p.D2708N	ENST00000278616	NM_000051.3	2708	Gat/Aat																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654643	67654643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	146	374	0	ENST00000264010.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000264010	NM_006565.3	377	cGt/cAt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214591	5214591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	172	823	0	ENST00000357368.4:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000357368	NM_002850.3	1492	cGg/cAg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004242	29004242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	97	268	0	ENST00000282397.4:c.1051C>T	p.Arg351Trp	p.R351W	ENST00000282397	NM_002019.4	351	Cgg/Tgg																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006218	22006218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	152	777	1	ENST00000276925.6:c.185C>T	p.Ala62Val	p.A62V	ENST00000276925	NM_004936.3	62	gCg/gTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467589	66467589	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772693559		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	55	250	0	ENST00000273854.3:c.680G>A	p.Arg227His	p.R227H	ENST00000273854	NM_004439.5	227	cGt/cAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289908	15289908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1301	257	1087	3	ENST00000263388.2:c.3646G>A	p.Ala1216Thr	p.A1216T	ENST00000263388	NM_000435.2	1216	Gcg/Acg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148544338	148544338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	107	454	1	ENST00000320356.2:c.53G>A	p.Arg18His	p.R18H	ENST00000320356	NM_004456.4	18	cGt/cAt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223601	53223601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	142	863	2	ENST00000375401.3:c.3758C>T	p.Pro1253Leu	p.P1253L	ENST00000375401	NM_004187.3	1253	cCg/cTg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511221	148511221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	86	397	0	ENST00000320356.2:c.1681C>T	p.Arg561Cys	p.R561C	ENST00000320356	NM_004456.4	561	Cgc/Tgc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	127	671	0	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187527259	187527259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201982861		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	141	450	0	ENST00000441802.2:c.10315G>A	p.Val3439Ile	p.V3439I	ENST00000441802	NM_005245.3	3439	Gtc/Atc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89813075	89813075	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143671872		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	97	526	2	ENST00000389301.3:c.3430C>T	p.Arg1144Trp	p.R1144W	ENST00000389301	NM_000135.2	1144	Cgg/Tgg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915853	127915853	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	96	382	0	ENST00000373547.4:c.628C>T	p.Arg210Ter	p.R210*	ENST00000373547	NM_002721.4	210	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108186820	108186820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	64	299	1	ENST00000278616.4:c.6178C>T	p.Arg2060Cys	p.R2060C	ENST00000278616	NM_000051.3	2060	Cgc/Tgc																																																																														
BLM	641	MSKCC	GRCh37	15	91333930	91333930	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	69	369	0	ENST00000355112.3:c.2875C>T	p.Arg959Ter	p.R959*	ENST00000355112	NM_000057.2	959	Cga/Tga																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865869	56865869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	89	288	0	ENST00000308159.5:c.1201G>A	p.Asp401Asn	p.D401N	ENST00000308159	NM_014669.4	401	Gac/Aac																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17387698	17387698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199960321		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	101	476	1	ENST00000359435.4:c.766G>A	p.Glu256Lys	p.E256K	ENST00000359435	NM_001033549.1	256	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68857442	68857442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	104	417	0	ENST00000261769.5:c.2077G>A	p.Gly693Ser	p.G693S	ENST00000261769	NM_004360.3	693	Ggc/Agc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934144	39934144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	51	575	0	ENST00000378444.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000378444	NM_001123385.1	152	cCg/cTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669523	88669523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	59	387	0	ENST00000360948.2:c.1375C>T	p.Arg459Trp	p.R459W	ENST00000360948	NM_001012338.2	459	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438262	49438262	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	147	591	0	ENST00000301067.7:c.5007del	p.Val1670SerfsTer52	p.V1670Sfs*52	ENST00000301067	NM_003482.3	1669	ccC/cc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112301	115112301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	60	284	0	ENST00000257566.3:c.1439C>T	p.Ala480Val	p.A480V	ENST00000257566	NM_016569.3	480	gCg/gTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256232	16256232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	49	374	0	ENST00000375759.3:c.3497C>T	p.Thr1166Met	p.T1166M	ENST00000375759	NM_015001.2	1166	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089777	27089777	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	37	503	0	ENST00000324856.7:c.2732+1G>A		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89346505	89346505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	286	710	0	ENST00000301030.4:c.6445G>A	p.Ala2149Thr	p.A2149T	ENST00000301030	NM_001256183.1	2149	Gca/Aca																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032092	10032092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201674066		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	105	544	0	ENST00000330684.3:c.731G>A	p.Arg244His	p.R244H	ENST00000330684	NM_001134407.1	244	cGc/cAc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431622	6431622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	49	322	0	ENST00000356142.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000356142	NM_018890.3	59	Gct/Act																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792660	33792660	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	16	175	0	ENST00000498907.2:c.661C>T	p.Gln221Ter	p.Q221*	ENST00000498907	NM_004364.3	221	Cag/Tag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133958	38133958	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	47	610	0	ENST00000317025.8:c.3928C>T	p.Arg1310Ter	p.R1310*	ENST00000317025	NM_023034.1	1310	Cga/Tga																																																																														
SPOP	8405	MSKCC	GRCh37	17	47679356	47679356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	73	358	0	ENST00000347630.2:c.851G>A	p.Arg284His	p.R284H	ENST00000347630	NM_001007230.1	284	cGc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244110	5244110	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141022401		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	235	1015	1	ENST00000357368.4:c.1372C>T	p.Arg458Cys	p.R458C	ENST00000357368	NM_002850.3	458	Cgc/Tgc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249602	110249602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	226	1111	1	ENST00000374672.4:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000374672	NM_004235.4	358	cCg/cTg																																																																														
MITF	4286	MSKCC	GRCh37	3	70014383	70014383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	120	474	1	ENST00000352241.4:c.1547C>T	p.Thr516Met	p.T516M	ENST00000352241	NM_198159.2	516	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443502	49443502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	141	628	0	ENST00000301067.7:c.3869G>A	p.Arg1290Gln	p.R1290Q	ENST00000301067	NM_003482.3	1290	cGg/cAg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517446	157517446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	79	360	1	ENST00000346085.5:c.4010G>A	p.Arg1337Gln	p.R1337Q	ENST00000346085	NM_020732.3	1337	cGa/cAa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775978	9775978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	174	862	0	ENST00000377346.4:c.442G>A	p.Glu148Lys	p.E148K	ENST00000377346	NM_005026.3	148	Gag/Aag																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206647732	206647732	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150428746		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	125	575	0	ENST00000367120.3:c.146G>A	p.Arg49His	p.R49H	ENST00000367120	NM_014002.3	49	cGc/cAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432319	432319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	100	400	0	ENST00000399788.2:c.2204G>T	p.Arg735Met	p.R735M	ENST00000399788	NM_001042603.1	735	aGg/aTg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515168	103515168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144645075		P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	36	194	0	ENST00000355739.4:c.1669G>A	p.Asp557Asn	p.D557N	ENST00000355739	NM_000123.3	557	Gat/Aat																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81946275	81946275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	190	805	0	ENST00000359376.3:c.2008C>A	p.Leu670Met	p.L670M	ENST00000359376	NM_002661.3	670	Ctg/Atg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351721	89351721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	132	738	1	ENST00000301030.4:c.1229C>T	p.Thr410Met	p.T410M	ENST00000301030	NM_001256183.1	410	aCg/aTg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805806	46805806	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	152	713	0	ENST00000290295.7:c.150del	p.Leu51TrpfsTer47	p.L51Wfs*47	ENST00000290295	NM_006361.5	50	ccC/cc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10305544	10305544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	201	911	0	ENST00000340748.4:c.32C>A	p.Pro11His	p.P11H	ENST00000340748		11	cCc/cAc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17951056	17951056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	144	539	0	ENST00000458235.1:c.1237C>A	p.Leu413Ile	p.L413I	ENST00000458235	NM_000215.3	413	Ctc/Atc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918163	50918163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	104	1061	0	ENST00000440232.2:c.2480A>G	p.Lys827Arg	p.K827R	ENST00000440232	NM_002691.3	827	aAg/aGg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46602865	46602865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	175	679	1	ENST00000263734.3:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000263734	NM_001430.4	308	cGg/cAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027113	48027114	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	52	308	0	ENST00000234420.5:c.1992dup	p.Glu665ArgfsTer3	p.E665Rfs*3	ENST00000234420	NM_000179.2	664	tca/tcAa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182151	99182151	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	105	482	0	ENST00000074304.5:c.2216T>C	p.Leu739Ser	p.L739S	ENST00000074304	NM_001134224.1	739	tTg/tCg																																																																														
BARD1	580	MSKCC	GRCh37	2	215645681	215645681	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	80	359	0	ENST00000260947.4:c.917del	p.Asn306IlefsTer11	p.N306Ifs*11	ENST00000260947	NM_000465.2	306	aAt/at																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433417	138433417	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	64	350	0	ENST00000289153.2:c.1195C>T	p.Arg399Ter	p.R399*	ENST00000289153	NM_006219.2	399	Cga/Tga																																																																														
WHSC1	0	MSKCC	GRCh37	4	1956900	1956900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	215	683	0	ENST00000382891.5:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000382891	NM_133335.3	784	cGg/cAg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178223	56178224	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	30	271	0	ENST00000399503.3:c.3200dup	p.Gly1068ArgfsTer2	p.G1068Rfs*2	ENST00000399503	NM_005921.1	1066	acc/aCcc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180040014	180040014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	179	986	0	ENST00000261937.6:c.3428C>T	p.Ala1143Val	p.A1143V	ENST00000261937	NM_182925.4	1143	gCc/gTc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199813	138199813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	100	454	1	ENST00000237289.4:c.1231C>T	p.Arg411Trp	p.R411W	ENST00000237289	NM_001270507.1	411	Cgg/Tgg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100243	157100243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	30	132	0	ENST00000346085.5:c.1180G>A	p.Ala394Thr	p.A394T	ENST00000346085	NM_020732.3	394	Gcc/Acc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2974112	2974112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	109	480	1	ENST00000396946.4:c.1493G>A	p.Arg498His	p.R498H	ENST00000396946	NM_032415.4	498	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	42	447	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	35	433	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	58	432	0	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																														
TET1	80312	MSKCC	GRCh37	10	70333143	70333143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	60	593	0	ENST00000373644.4:c.1048G>A	p.Glu350Lys	p.E350K	ENST00000373644	NM_030625.2	350	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76778812	76778812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	55	383	0	ENST00000373344.5:c.6767C>A	p.Ser2256Tyr	p.S2256Y	ENST00000373344	NM_000489.3	2256	tCt/tAt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171607	36171607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	34	299	0	ENST00000300305.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000300305		320	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748596	40748596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	32	455	1	ENST00000373198.4:c.2920C>T	p.Arg974Trp	p.R974W	ENST00000373198	NM_133170.3	974	Cgg/Tgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48919244	48919244	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	18	94	0	ENST00000267163.4:c.409G>T	p.Glu137Ter	p.E137*	ENST00000267163	NM_000321.2	137	Gaa/Taa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143029297	143029297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	23	172	0	ENST00000262992.4:c.2323G>A	p.Glu775Lys	p.E775K	ENST00000262992	NM_001101669.1	775	Gaa/Aaa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001374	150001374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	35	456	0	ENST00000253339.5:c.2230C>T	p.Arg744Ter	p.R744*	ENST00000253339		744	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68844193	68844193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	67	541	0	ENST00000261769.5:c.781G>A	p.Glu261Lys	p.E261K	ENST00000261769	NM_004360.3	261	Gaa/Aaa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	36	357	0	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																																																														
HGF	3082	MSKCC	GRCh37	7	81381529	81381529	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	15	286	0	ENST00000222390.5:c.532C>T	p.Arg178Ter	p.R178*	ENST00000222390	NM_000601.4	178	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	15	191	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	41961867	41961867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	30	284	0	ENST00000219905.7:c.775C>T	p.Arg259Trp	p.R259W	ENST00000219905	NM_001164273.1	259	Cgg/Tgg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78914356	78914356	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	80	765	2	ENST00000306801.3:c.2980C>T	p.Arg994Ter	p.R994*	ENST00000306801	NM_020761.2	994	Cga/Tga																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140900	37140900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	54	532	1	ENST00000373509.5:c.736G>A	p.Glu246Lys	p.E246K	ENST00000373509	NM_002648.3	246	Gaa/Aaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231757	66231757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	26	300	1	ENST00000273854.3:c.1943G>T	p.Arg648Ile	p.R648I	ENST00000273854	NM_004439.5	648	aGa/aTa																																																																														
INSR	3643	MSKCC	GRCh37	19	7267797	7267797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	75	527	1	ENST00000302850.5:c.211G>A	p.Glu71Lys	p.E71K	ENST00000302850	NM_000208.2	71	Gaa/Aaa																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	20	518	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845627	63845627	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	18	175	0	ENST00000279873.7:c.1366G>T	p.Glu456Ter	p.E456*	ENST00000279873	NM_032199.2	456	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	438057	438057	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	56	338	0	ENST00000399788.2:c.1912G>T	p.Glu638Ter	p.E638*	ENST00000399788	NM_001042603.1	638	Gaa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	42040934	42040934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	70	628	0	ENST00000219905.7:c.5312C>A	p.Ser1771Tyr	p.S1771Y	ENST00000219905	NM_001164273.1	1771	tCt/tAt																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870376	155870376	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	51	467	0	ENST00000368323.3:c.463G>T	p.Glu155Ter	p.E155*	ENST00000368323	NM_006912.5	155	Gaa/Taa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626736	12626736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149580968		P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	42	412	0	ENST00000251849.4:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000251849	NM_002880.3	518	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624299	89624299	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	76	446	0	ENST00000371953.3:c.73T>G	p.Leu25Val	p.L25V	ENST00000371953	NM_000314.4	25	Ttg/Gtg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489544	56489544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	74	512	0	ENST00000267101.3:c.2009G>A	p.Arg670Gln	p.R670Q	ENST00000267101	NM_001982.3	670	cGg/cAg																																																																														
HGF	3082	MSKCC	GRCh37	7	81355325	81355325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	12	199	0	ENST00000222390.5:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000222390	NM_000601.4	350	cGa/cAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37680983	37680983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	39	473	1	ENST00000447079.4:c.3152G>A	p.Arg1051Gln	p.R1051Q	ENST00000447079	NM_015083.1	1051	cGa/cAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637232	176637232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	65	563	0	ENST00000439151.2:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000439151	NM_022455.4	611	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152055755	152055755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	52	379	0	ENST00000262189.6:c.167G>A	p.Arg56Gln	p.R56Q	ENST00000262189	NM_170606.2	56	cGa/cAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123210233	123210233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	62	459	1	ENST00000218089.9:c.2585G>T	p.Arg862Ile	p.R862I	ENST00000218089	NM_001042749.1	862	aGa/aTa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942036	81942036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	31	459	0	ENST00000359376.3:c.1573G>A	p.Glu525Lys	p.E525K	ENST00000359376	NM_002661.3	525	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108165730	108165730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	42	293	0	ENST00000278616.4:c.4853G>A	p.Arg1618Gln	p.R1618Q	ENST00000278616	NM_000051.3	1618	cGa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189582062	189582062	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	48	361	0	ENST00000264731.3:c.621G>T	p.Lys207Asn	p.K207N	ENST00000264731	NM_003722.4	207	aaG/aaT																																																																														
YAP1	10413	MSKCC	GRCh37	11	102076800	102076800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768834182		P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	110	760	0	ENST00000282441.5:c.979C>T	p.Arg327Trp	p.R327W	ENST00000282441	NM_001130145.2	327	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542870	187542870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	35	249	1	ENST00000441802.2:c.4870G>T	p.Glu1624Ter	p.E1624*	ENST00000441802	NM_005245.3	1624	Gaa/Taa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67459152	67459152	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	59	656	0	ENST00000327367.4:c.568G>T	p.Glu190Ter	p.E190*	ENST00000327367	NM_005902.3	190	Gaa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259436	55259436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	63	480	0	ENST00000275493.2:c.2494C>T	p.Arg832Cys	p.R832C	ENST00000275493	NM_005228.3	832	Cgc/Tgc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265106	198265106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	41	335	0	ENST00000335508.6:c.2771G>A	p.Arg924Gln	p.R924Q	ENST00000335508	NM_012433.2	924	cGa/cAa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127991	64127991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	94	1003	1	ENST00000334205.4:c.389G>A	p.Arg130His	p.R130H	ENST00000334205	NM_003942.2	130	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105552	27105552	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	53	416	0	ENST00000324856.7:c.5163del	p.Arg1722AspfsTer3	p.R1722Dfs*3	ENST00000324856	NM_006015.4	1721	cgA/cg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248037	59248037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	84	629	0	ENST00000371222.2:c.706C>T	p.Pro236Ser	p.P236S	ENST00000371222	NM_002228.3	236	Ccc/Tcc																																																																														
RET	5979	MSKCC	GRCh37	10	43600450	43600450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	81	973	0	ENST00000355710.3:c.676C>T	p.Arg226Cys	p.R226C	ENST00000355710	NM_020975.4	226	Cgc/Tgc																																																																														
TET1	80312	MSKCC	GRCh37	10	70405523	70405523	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	37	419	0	ENST00000373644.4:c.3037T>C	p.Ser1013Pro	p.S1013P	ENST00000373644	NM_030625.2	1013	Tcc/Ccc																																																																														
TET1	80312	MSKCC	GRCh37	10	70406484	70406484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147498630		P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	55	652	0	ENST00000373644.4:c.3998G>A	p.Arg1333Lys	p.R1333K	ENST00000373644	NM_030625.2	1333	aGa/aAa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672028	88672028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	35	410	0	ENST00000372037.3:c.562C>T	p.Arg188Cys	p.R188C	ENST00000372037	NM_004329.2	188	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108137931	108137931	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	29	297	0	ENST00000278616.4:c.2500G>T	p.Glu834Ter	p.E834*	ENST00000278616	NM_000051.3	834	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402142	402142	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	48	426	0	ENST00000399788.2:c.4649A>G	p.Lys1550Arg	p.K1550R	ENST00000399788	NM_001042603.1	1550	aAa/aGa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644482	21644482	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	35	343	0	ENST00000421138.2:c.185A>C	p.Asp62Ala	p.D62A	ENST00000421138		62	gAt/gCt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913368	32913368	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	37	304	0	ENST00000380152.3:c.4876A>T	p.Asn1626Tyr	p.N1626Y	ENST00000380152		1626	Aat/Tat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562351	95562351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	35	351	0	ENST00000343455.3:c.4906G>T	p.Asp1636Tyr	p.D1636Y	ENST00000343455	NM_177438.2	1636	Gac/Tac																																																																														
MGA	23269	MSKCC	GRCh37	15	42032285	42032285	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	48	572	0	ENST00000219905.7:c.4469A>C	p.Lys1490Thr	p.K1490T	ENST00000219905	NM_001164273.1	1490	aAa/aCa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467202	99467202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	38	344	0	ENST00000268035.6:c.2583G>T	p.Leu861Phe	p.L861F	ENST00000268035	NM_000875.3	861	ttG/ttT																																																																														
TSC2	7249	MSKCC	GRCh37	16	2127654	2127654	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	79	749	1	ENST00000219476.3:c.2893G>T	p.Glu965Ter	p.E965*	ENST00000219476	NM_000548.3	965	Gaa/Taa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658792	3658792	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	61	653	0	ENST00000294008.3:c.174T>G	p.Phe58Leu	p.F58L	ENST00000294008	NM_032444.2	58	ttT/ttG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827733	72827733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	57	601	0	ENST00000268489.5:c.8848C>T	p.Arg2950Cys	p.R2950C	ENST00000268489	NM_006885.3	2950	Cgc/Tgc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271350	18271350	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	80	755	0	ENST00000222254.8:c.392T>G	p.Leu131Arg	p.L131R	ENST00000222254	NM_005027.3	131	cTt/cGt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249779	39249779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	25	423	0	ENST00000402219.2:c.1790G>A	p.Gly597Glu	p.G597E	ENST00000402219	NM_005633.3	597	gGa/gAa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630500	47630500	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	83	997	0	ENST00000233146.2:c.170T>C	p.Val57Ala	p.V57A	ENST00000233146	NM_000251.2	57	gTg/gCg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256470	46256470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	43	289	0	ENST00000371998.3:c.698G>A	p.Arg233Gln	p.R233Q	ENST00000371998		233	cGa/cAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41573738	41573738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	79	872	1	ENST00000263253.7:c.6023C>A	p.Ser2008Tyr	p.S2008Y	ENST00000263253	NM_001429.3	2008	tCt/tAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165150	47165150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	27	179	0	ENST00000409792.3:c.976G>T	p.Asp326Tyr	p.D326Y	ENST00000409792	NM_014159.6	326	Gat/Tat																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114289	73114289	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	17	138	0	ENST00000356692.5:c.925G>T	p.Glu309Ter	p.E309*	ENST00000356692		309	Gaa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89456478	89456478	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142865154		P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	38	327	0	ENST00000336596.2:c.1654G>A	p.Ala552Thr	p.A552T	ENST00000336596	NM_005233.5	552	Gca/Aca																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825433	134825433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	38	550	0	ENST00000398015.3:c.949G>A	p.Val317Met	p.V317M	ENST00000398015	NM_004441.4	317	Gtg/Atg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880943	134880943	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	50	644	0	ENST00000398015.3:c.1506T>G	p.Tyr502Ter	p.Y502*	ENST00000398015	NM_004441.4	502	taT/taG																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960107	134960107	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	55	640	0	ENST00000398015.3:c.2464G>T	p.Glu822Ter	p.E822*	ENST00000398015	NM_004441.4	822	Gag/Tag																																																																														
ATR	545	MSKCC	GRCh37	3	142215961	142215961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	31	348	0	ENST00000350721.4:c.5632G>A	p.Glu1878Lys	p.E1878K	ENST00000350721	NM_001184.3	1878	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	27	334	0	ENST00000263967.3:c.317G>C	p.Gly106Ala	p.G106A	ENST00000263967	NM_006218.2	106	gGc/gCc																																																																														
KDR	3791	MSKCC	GRCh37	4	55970930	55970930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	52	505	0	ENST00000263923.4:c.1867G>T	p.Asp623Tyr	p.D623Y	ENST00000263923	NM_002253.2	623	Gac/Tac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247381	153247381	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	17	174	0	ENST00000281708.4:c.1421T>G	p.Val474Gly	p.V474G	ENST00000281708	NM_033632.3	474	gTt/gGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153259069	153259069	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	13	152	0	ENST00000281708.4:c.746A>C	p.Lys249Thr	p.K249T	ENST00000281708	NM_033632.3	249	aAa/aCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187519233	187519233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	48	547	0	ENST00000441802.2:c.12150G>T	p.Glu4050Asp	p.E4050D	ENST00000441802	NM_005245.3	4050	gaG/gaT																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56180522	56180524	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	25	220	0	ENST00000399503.3:c.3857_3859del	p.Glu1286del	p.E1286del	ENST00000399503	NM_005921.1	1284	cAAGaa/caa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181849	56181849	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	34	249	0	ENST00000399503.3:c.4073del	p.Ser1358CysfsTer19	p.S1358Cfs*19	ENST00000399503	NM_005921.1	1358	tCg/tg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176639155	176639155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	41	439	0	ENST00000439151.2:c.3755G>A	p.Gly1252Glu	p.G1252E	ENST00000439151	NM_022455.4	1252	gGa/gAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987367	2987367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	73	592	0	ENST00000396946.4:c.62C>T	p.Ala21Val	p.A21V	ENST00000396946	NM_032415.4	21	gCc/gTc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6031673	6031673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	50	496	0	ENST00000265849.7:c.919A>G	p.Asn307Asp	p.N307D	ENST00000265849	NM_000535.5	307	Aat/Gat																																																																														
EZH2	2146	MSKCC	GRCh37	7	148516780	148516780	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	42	217	0	ENST00000320356.2:c.908-1G>A		p.X303_splice	ENST00000320356	NM_004456.4	303																																																																															
WHSC1L1	0	MSKCC	GRCh37	8	38133992	38133992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	67	511	0	ENST00000317025.8:c.3894G>T	p.Glu1298Asp	p.E1298D	ENST00000317025	NM_023034.1	1298	gaG/gaT																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5563210	5563210	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	27	251	0	ENST00000397747.3:c.815C>A	p.Ala272Asp	p.A272D	ENST00000397747	NM_025239.3	272	gCt/gAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524937	8524937	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	25	288	0	ENST00000356435.5:c.667T>G	p.Leu223Val	p.L223V	ENST00000356435		223	Tta/Gta																																																																														
TEK	7010	MSKCC	GRCh37	9	27169591	27169591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	77	731	0	ENST00000380036.4:c.592C>A	p.Leu198Ile	p.L198I	ENST00000380036	NM_000459.3	198	Ctc/Atc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270538	98270538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	45	414	0	ENST00000331920.6:c.106A>G	p.Thr36Ala	p.T36A	ENST00000331920	NM_000264.3	36	Acg/Gcg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	54	416	0	ENST00000324856.7:c.5164C>G	p.Arg1722Gly	p.R1722G	ENST00000324856	NM_006015.4	1722	Cga/Gga																																																																														
ATM	472	MSKCC	GRCh37	11	108175550	108175550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	43	333	0	ENST00000278616.4:c.5645G>A	p.Arg1882Gln	p.R1882Q	ENST00000278616	NM_000051.3	1882	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421012	49421012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	33	413	0	ENST00000301067.7:c.14737G>T	p.Glu4913Ter	p.E4913*	ENST00000301067	NM_003482.3	4913	Gaa/Taa																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281392	49281392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	83	741	0	ENST00000282018.3:c.439C>A	p.Leu147Met	p.L147M	ENST00000282018	NM_020377.2	147	Ctg/Atg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39704860	39704860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	12	84	0	ENST00000361337.2:c.205C>A	p.His69Asn	p.H69N	ENST00000361337	NM_003286.2	69	Cac/Aac																																																																														
TOP1	7150	MSKCC	GRCh37	20	39713114	39713114	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	11	119	0	ENST00000361337.2:c.520A>C	p.Lys174Gln	p.K174Q	ENST00000361337	NM_003286.2	174	Aaa/Caa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151948013	151948013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	53	368	0	ENST00000262189.6:c.1660C>A	p.Gln554Lys	p.Q554K	ENST00000262189	NM_170606.2	554	Caa/Aaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123229247	123229247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	28	245	0	ENST00000218089.9:c.3731G>T	p.Arg1244Ile	p.R1244I	ENST00000218089	NM_001042749.1	1244	aGa/aTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	43	347	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0047785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	83	499	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	48	262	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
MAX	4149	MSKCC	GRCh37	14	65560514	65560514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	62	293	0	ENST00000358664.4:c.83A>G	p.His28Arg	p.H28R	ENST00000358664	NM_002382.4	28	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	32	165	0	ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023756	27023756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	93	457	2	ENST00000324856.7:c.862C>T	p.Gln288Ter	p.Q288*	ENST00000324856	NM_006015.4	288	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	27	227	0	ENST00000263967.3:c.3145G>A	p.Gly1049Ser	p.G1049S	ENST00000263967	NM_006218.2	1049	Ggt/Agt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711971	89711971	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	54	298	0	ENST00000371953.3:c.589A>T	p.Lys197Ter	p.K197*	ENST00000371953	NM_000314.4	197	Aag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442550	52442570	+	inframe_deletion	In_Frame_Del	DEL	CAAGGTAGAGACCTTTCGCCG	CAAGGTAGAGACCTTTCGCCG	-			P-0047785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	42	361	0	ENST00000460680.1:c.175_195del	p.Arg59_Leu65del	p.R59_L65del	ENST00000460680	NM_004656.3	59	CGGCGAAAGGTCTCTACCTTG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0047790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	510	676	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	18	231	1	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0047790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	138	132	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275420	38275420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	584	642	1	ENST00000425967.3:c.1613G>A	p.Arg538His	p.R538H	ENST00000425967	NM_001174067.1	538	cGt/cAt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929465	81929465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	166	454	0	ENST00000359376.3:c.1126C>T	p.Arg376Trp	p.R376W	ENST00000359376	NM_002661.3	376	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0047811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	417	721	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
SOS1	6654	MSKCC	GRCh37	2	39214712	39214712	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs56248239		P-0047811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	61	300	0	ENST00000402219.2:c.3412A>G	p.Ile1138Val	p.I1138V	ENST00000402219	NM_005633.3	1138	Ata/Gta																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288663	33288663	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	300	387	0	ENST00000374542.5:c.889del	p.Ala297LeufsTer73	p.A297Lfs*73	ENST00000374542	NM_001141970.1	297	Gct/ct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486338	8486338	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	44	215	0	ENST00000356435.5:c.2479C>G	p.Pro827Ala	p.P827A	ENST00000356435		827	Cct/Gct																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0047812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	241	479	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0047812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	143	210	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654633	67654633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	181	301	0	ENST00000264010.4:c.1120A>G	p.Thr374Ala	p.T374A	ENST00000264010	NM_006565.3	374	Act/Gct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828912	72828913	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0047812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	207	510	0	ENST00000268489.5:c.7668_7669del	p.Gln2557GlufsTer21	p.Q2557Efs*21	ENST00000268489	NM_006885.3	2556	gcGCag/gcag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	145	343	0	ENST00000324856.7:c.5164del	p.Arg1722AspfsTer3	p.R1722Dfs*3	ENST00000324856	NM_006015.4	1722	Cga/ga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692924	89692924	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0047812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	352	387	0	ENST00000371953.3:c.408T>A	p.Cys136Ter	p.C136*	ENST00000371953	NM_000314.4	136	tgT/tgA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591204	67591269	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTT	TTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTT	-			P-0047812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	70	198	0	ENST00000274335.5:c.1746-44_1767del		p.X582_splice	ENST00000274335		582																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045828	26045828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	167	413	0	ENST00000540144.1:c.190C>T	p.Arg64Trp	p.R64W	ENST00000540144	NM_003531.2	64	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	52	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	71	364	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0047814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	46	404	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097808	27097808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	28	259	0	ENST00000324856.7:c.3399del	p.Ser1134LeufsTer27	p.S1134Lfs*27	ENST00000324856	NM_006015.4	1133	Ccc/cc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435828	56435828	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	56	543	0	ENST00000407977.2:c.1309del	p.Arg437GlyfsTer65	p.R437Gfs*65	ENST00000407977		437	Cgg/gg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211612	36211612	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	47	447	0	ENST00000222270.7:c.1363G>T	p.Glu455Ter	p.E455*	ENST00000222270	NM_014727.1	455	Gaa/Taa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128050292	128050292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	49	441	0	ENST00000285398.2:c.365C>T	p.Ser122Phe	p.S122F	ENST00000285398	NM_000122.1	122	tCc/tTc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62324228	62324228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	91	875	0	ENST00000508582.2:c.2795G>A	p.Ser932Asn	p.S932N	ENST00000508582		932	aGc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	321	679	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	73	157	2	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	833	394	8	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	1888	712	34	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681119	117681120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs748436511		P-0047815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	44	376	0	ENST00000368508.3:c.3500dup	p.Leu1167PhefsTer26	p.L1167Ffs*26	ENST00000368508	NM_002944.2	1167	tta/ttTa																																																																														
ATM	472	MSKCC	GRCh37	11	108124609	108124610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	163	280	0	ENST00000278616.4:c.1971dup	p.Asp658Ter	p.D658*	ENST00000278616	NM_000051.3	656	act/acTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231386	46231386	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0047815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	176	285	3	ENST00000334344.6:c.1226T>A	p.Leu409Ter	p.L409*	ENST00000334344	NM_152641.2	409	tTa/tAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244146	46244147	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0047815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	189	344	1	ENST00000334344.6:c.2241_2242del	p.His747GlnfsTer93	p.H747Qfs*93	ENST00000334344	NM_152641.2	747	cAT/c																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68934958	68934958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	139	297	2	ENST00000487270.1:c.1027G>T	p.Val343Phe	p.V343F	ENST00000487270	NM_133509.3	343	Gtt/Ttt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858511	9858511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	198	502	1	ENST00000330684.3:c.2890C>T	p.Gln964Ter	p.Q964*	ENST00000330684	NM_001134407.1	964	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112173409	112173410	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0047815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	100	209	0	ENST00000257430.4:c.2120_2121dup	p.Lys708SerfsTer11	p.K708Sfs*11	ENST00000257430	NM_000038.5	706	-/CT																																																																														
RAD50	10111	MSKCC	GRCh37	5	131973908	131973908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	111	207	2	ENST00000265335.6:c.3611G>T	p.Gly1204Val	p.G1204V	ENST00000265335		1204	gGa/gTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878973	151878973	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	212	447	2	ENST00000262189.6:c.5972C>G	p.Ser1991Ter	p.S1991*	ENST00000262189	NM_170606.2	1991	tCa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	160	270	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	219	519	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
RARA	5914	MSKCC	GRCh37	17	38512270	38512270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	111	730	0	ENST00000254066.5:c.1181G>T	p.Arg394Leu	p.R394L	ENST00000254066	NM_000964.3	394	cGg/cTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	45	296	0	ENST00000342988.3:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000342988	NM_005359.5	351	Gat/Tat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135796754	135796754	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	37	141	0	ENST00000298552.3:c.733C>T	p.Arg245Ter	p.R245*	ENST00000298552	NM_001162426.1	245	Cga/Tga																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090446	37090446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	48	270	1	ENST00000231790.2:c.2041G>A	p.Ala681Thr	p.A681T	ENST00000231790	NM_000249.3	681	Gct/Act																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212174	36212174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	42	422	0	ENST00000222270.7:c.1925G>A	p.Arg642Gln	p.R642Q	ENST00000222270	NM_014727.1	642	cGg/cAg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702612	52702614	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0047817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	27	244	0	ENST00000394830.3:c.284_286del	p.Met95del	p.M95del	ENST00000394830	NM_018313.4	95	aTGAaa/aaa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522578	176522578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	110	742	1	ENST00000292408.4:c.1675C>T	p.Arg559Trp	p.R559W	ENST00000292408	NM_213647.1	559	Cgg/Tgg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800875	120800875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	64	570	2	ENST00000257552.2:c.373G>A	p.Val125Met	p.V125M	ENST00000257552	NM_002442.3	125	Gtg/Atg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73340158	73340158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	18	158	0	ENST00000377767.4:c.1922T>C	p.Met641Thr	p.M641T	ENST00000377767	NM_014953.3	641	aTg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0047818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	81	551	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434931	49434931	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	104	605	1	ENST00000301067.7:c.6622C>T	p.Gln2208Ter	p.Q2208*	ENST00000301067	NM_003482.3	2208	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422609	49422609	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	50	436	0	ENST00000301067.7:c.14382+2T>C		p.X4794_splice	ENST00000301067	NM_003482.3	4794																																																																															
UPF1	5976	MSKCC	GRCh37	19	18958561	18958561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	79	438	0	ENST00000262803.5:c.380G>A	p.Gly127Glu	p.G127E	ENST00000262803	NM_002911.3	127	gGa/gAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55233082	55233082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	53	447	1	ENST00000275493.2:c.1832C>T	p.Ala611Val	p.A611V	ENST00000275493	NM_005228.3	611	gCa/gTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845181	151845181	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	51	447	0	ENST00000262189.6:c.13831T>G	p.Phe4611Val	p.F4611V	ENST00000262189	NM_170606.2	4611	Ttt/Gtt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	10	252	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	77	291	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	33	364	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	21	195	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	106	689	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	118	739	1	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843688	156843688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	116	866	1	ENST00000524377.1:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000524377	NM_002529.3	372	Gcc/Acc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30303605	30303605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	77	441	0	ENST00000262643.3:c.33G>T	p.Lys11Asn	p.K11N	ENST00000262643	NM_001238.2	11	aaG/aaT																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1345	94	943	1	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																														
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	53	441	2	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	60	350	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683192	88683192	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199907158		P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	33	294	1	ENST00000372037.3:c.1402G>A	p.Glu468Lys	p.E468K	ENST00000372037	NM_004329.2	468	Gaa/Aaa																																																																														
CCND1	595	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1308	135	899	0	ENST00000227507.2:c.859C>G	p.Pro287Ala	p.P287A	ENST00000227507	NM_053056.2	287	Ccc/Gcc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	118	791	3	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	105	884	5	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	63	609	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
PAK7	0	MSKCC	GRCh37	20	9561250	9561250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	48	348	0	ENST00000353224.5:c.532G>A	p.Gly178Arg	p.G178R	ENST00000353224	NM_177990.2	178	Ggg/Agg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	110	726	4	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																														
TET2	54790	MSKCC	GRCh37	4	106155778	106155779	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	27	318	0	ENST00000380013.4:c.685dupA	p.Thr229AsnfsTer25	p.T229Nfs*25	ENST00000380013	NM_001127208.2	227	gaa/gAaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076932	41076932	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	40	442	0	ENST00000373198.4:c.1488delG	p.Phe498LeufsTer103	p.F498Lfs*103	ENST00000373198	NM_133170.3	496	ggG/gg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1434	138	982	5	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	96	632	3	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	120	857	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
AXL	558	MSKCC	GRCh37	19	41749571	41749571	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200850031		P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	75	602	1	ENST00000301178.4:c.1496G>A	p.Arg499His	p.R499H	ENST00000301178	NM_021913.4	499	cGc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244325	5244325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1270	151	912	0	ENST00000357368.4:c.1157G>A	p.Arg386His	p.R386H	ENST00000357368	NM_002850.3	386	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421002	49421002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	38	374	0	ENST00000301067.7:c.14747C>T	p.Pro4916Leu	p.P4916L	ENST00000301067	NM_003482.3	4916	cCg/cTg																																																																														
MET	4233	MSKCC	GRCh37	7	116371771	116371771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	36	294	0	ENST00000397752.3:c.1250G>A	p.Arg417Gln	p.R417Q	ENST00000397752	NM_000245.2	417	cGa/cAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127460	55127460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	60	445	0	ENST00000257290.5:c.248C>T	p.Thr83Met	p.T83M	ENST00000257290	NM_006206.4	83	aCg/aTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209298	98209298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149667902		P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	105	772	0	ENST00000331920.6:c.4240G>A	p.Val1414Met	p.V1414M	ENST00000331920	NM_000264.3	1414	Gtg/Atg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211135	36211135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201417711		P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1464	151	972	0	ENST00000222270.7:c.886G>A	p.Gly296Ser	p.G296S	ENST00000222270	NM_014727.1	296	Ggc/Agc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805356	89805356	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	47	531	0	ENST00000389301.3:c.4194del	p.Ala1399LeufsTer8	p.A1399Lfs*8	ENST00000389301	NM_000135.2	1398	aaA/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435116	49435116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	110	597	0	ENST00000301067.7:c.6437C>T	p.Pro2146Leu	p.P2146L	ENST00000301067	NM_003482.3	2146	cCg/cTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412530	63412530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	73	559	0	ENST00000330258.3:c.637C>T	p.Gln213Ter	p.Q213*	ENST00000330258	NM_152424.3	213	Cag/Tag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968288	18968288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	112	905	0	ENST00000262803.5:c.2128G>A	p.Ala710Thr	p.A710T	ENST00000262803	NM_002911.3	710	Gcc/Acc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784110	9784110	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	80	615	0	ENST00000377346.4:c.2678A>C	p.Asp893Ala	p.D893A	ENST00000377346	NM_005026.3	893	gAt/gCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107219	27107219	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	42	305	0	ENST00000324856.7:c.6830A>C	p.Asp2277Ala	p.D2277A	ENST00000324856	NM_006015.4	2277	gAt/gCt																																																																														
SESN2	83667	MSKCC	GRCh37	1	28601483	28601483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	92	591	2	ENST00000253063.3:c.1168C>T	p.Arg390Cys	p.R390C	ENST00000253063	NM_031459.4	390	Cgc/Tgc																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551940	150551940	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	125	545	0	ENST00000369026.2:c.67del	p.Ala23ProfsTer26	p.A23Pfs*26	ENST00000369026	NM_021960.4	23	Gcc/cc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851075	63851075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	54	445	0	ENST00000279873.7:c.1853C>T	p.Ala618Val	p.A618V	ENST00000279873	NM_032199.2	618	gCc/gTc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114799844	114799844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	63	465	0	ENST00000543371.1:c.511G>A	p.Ala171Thr	p.A171T	ENST00000543371	NM_001198531.1	171	Gcc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420742	49420742	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	99	649	0	ENST00000301067.7:c.15007C>T	p.Gln5003Ter	p.Q5003*	ENST00000301067	NM_003482.3	5003	Cag/Tag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690569	88690569	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	43	329	0	ENST00000360948.2:c.461A>G	p.Glu154Gly	p.E154G	ENST00000360948	NM_001012338.2	154	gAa/gGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892132	9892132	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	45	354	0	ENST00000330684.3:c.2356+2T>C		p.X786_splice	ENST00000330684	NM_001134407.1	786																																																																															
TP53	7157	MSKCC	GRCh37	17	7578498	7578498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1417	165	949	2	ENST00000269305.4:c.432G>T	p.Gln144His	p.Q144H	ENST00000269305	NM_001126112.2	144	caG/caT																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796934	78796934	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	40	494	0	ENST00000306801.3:c.1052del	p.Leu351TyrfsTer7	p.L351Yfs*7	ENST00000306801	NM_020761.2	349	aaT/aa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272305	15272305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	140	938	1	ENST00000263388.2:c.6134C>A	p.Pro2045His	p.P2045H	ENST00000263388	NM_000435.2	2045	cCt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223355	36223355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1490	176	1010	4	ENST00000222270.7:c.5909del	p.Pro1970LeufsTer17	p.P1970Lfs*17	ENST00000222270	NM_014727.1	1969	Ccc/cc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905962	50905962	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1476	164	1004	0	ENST00000440232.2:c.934del	p.Val312CysfsTer81	p.V312Cfs*81	ENST00000440232	NM_002691.3	312	Gtg/tg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158617527	158617527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	80	390	1	ENST00000263640.3:c.1129G>A	p.Gly377Ser	p.G377S	ENST00000263640	NM_001105.4	377	Ggc/Agc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158636858	158636858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	44	357	0	ENST00000263640.3:c.322C>T	p.Pro108Ser	p.P108S	ENST00000263640	NM_001105.4	108	Ccc/Tcc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989542	212989542	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	35	297	0	ENST00000342788.4:c.169G>C	p.Glu57Gln	p.E57Q	ENST00000342788	NM_005235.2	57	Gag/Cag																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793427	242793427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	88	757	1	ENST00000334409.5:c.650C>T	p.Pro217Leu	p.P217L	ENST00000334409	NM_005018.2	217	cCt/cTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514499	41514499	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	60	460	0	ENST00000373198.4:c.162G>A	p.Trp54Ter	p.W54*	ENST00000373198	NM_133170.3	54	tgG/tgA																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321534	62321534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1347	77	857	3	ENST00000508582.2:c.2308G>A	p.Ala770Thr	p.A770T	ENST00000508582		770	Gcc/Acc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44514808	44514808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	71	512	0	ENST00000291552.4:c.439G>A	p.Val147Met	p.V147M	ENST00000291552	NM_006758.2	147	Gtg/Atg																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288207	21288207	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	69	477	0	ENST00000354336.3:c.452T>C	p.Val151Ala	p.V151A	ENST00000354336	NM_005207.3	151	gTg/gCg																																																																														
NF2	4771	MSKCC	GRCh37	22	30050656	30050656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	45	286	0	ENST00000338641.4:c.458A>G	p.Tyr153Cys	p.Y153C	ENST00000338641	NM_000268.3	153	tAc/tGc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458317	12458317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	86	495	0	ENST00000287820.6:c.934G>T	p.Gly312Cys	p.G312C	ENST00000287820	NM_015869.4	312	Ggc/Tgc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30648419	30648419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	135	684	0	ENST00000359013.4:c.44T>C	p.Val15Ala	p.V15A	ENST00000359013	NM_001024847.2	15	gTc/gCc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933766	49933766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	94	789	0	ENST00000296474.3:c.2511G>T	p.Trp837Cys	p.W837C	ENST00000296474	NM_002447.2	837	tgG/tgT																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526558	31526558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	44	427	0	ENST00000344624.3:c.482C>A	p.Pro161Gln	p.P161Q	ENST00000344624		161	cCg/cAg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631142	176631142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	39	376	0	ENST00000439151.2:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000439151	NM_022455.4	362	cGg/cAg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101867493	101867493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	25	94	0	ENST00000374994.4:c.6G>T	p.Glu2Asp	p.E2D	ENST00000374994	NM_004612.2	2	gaG/gaT																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128322020	128322020	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	66	510	0	ENST00000265960.3:c.740del	p.Pro247ArgfsTer27	p.P247Rfs*27	ENST00000265960	NM_001006617.1	247	cCg/cg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771900	135771900	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	66	564	0	ENST00000298552.3:c.3217A>G	p.Ser1073Gly	p.S1073G	ENST00000298552	NM_001162426.1	1073	Agc/Ggc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139820198	139820198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147459885		P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	91	607	0	ENST00000247668.2:c.1351G>A	p.Val451Met	p.V451M	ENST00000247668	NM_021138.3	451	Gtg/Atg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933575	39933575	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	111	619	0	ENST00000378444.4:c.1024del	p.Arg342GlufsTer36	p.R342Efs*36	ENST00000378444	NM_001123385.1	342	Cga/ga																																																																														
MED12	9968	MSKCC	GRCh37	X	70343072	70343072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	73	379	0	ENST00000374080.3:c.1613C>T	p.Ala538Val	p.A538V	ENST00000374080		538	gCt/gTt																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89791142	89791143	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	38	204	0	ENST00000336032.3:c.529_530insA	p.Leu177HisfsTer31	p.L177Hfs*31	ENST00000336032	NM_006813.2	177	ctc/cAtc																																																																														
BARD1	580	MSKCC	GRCh37	2	215593430	215593430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	16	169	0	ENST00000260947.4:c.2304G>A	p.Met768Ile	p.M768I	ENST00000260947	NM_000465.2	768	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	273	307	4	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0047852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	530	615	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087895	27087898	+	frameshift_variant	Frame_Shift_Del	DEL	CCAC	CCAC	-			P-0047852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	831	445	2	ENST00000324856.7:c.2185_2188del	p.Pro729ValfsTer12	p.P729Vfs*12	ENST00000324856	NM_006015.4	728	CCACcc/cc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573556	48573557	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0047852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	116	197	0	ENST00000342988.3:c.140_141del	p.Leu47GlnfsTer6	p.L47Qfs*6	ENST00000342988	NM_005359.5	47	cTG/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974405	21974718	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCATCTAATACAAATATGTTCCCCCCTTCAGATCTTCTCAGCATTCGAGAGATCTGTACGCGCGTGGCTCCTCATTCCTCTTCCTTGGCTTCCCAAGCCCCCAGGGCGTCGCCAGGAGGAGGTCTGTGATTACAAACCCCTTCTGAAAACTCCCCAGGAAGCCTCCCCTTTTTCCGGAGAATCGAAGCGCTACCTGATTCCAATTCCCCTGCAAACTTCGTCCTCCAGAGTCGCCCGCCATCCCCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAG	CCATCTAATACAAATATGTTCCCCCCTTCAGATCTTCTCAGCATTCGAGAGATCTGTACGCGCGTGGCTCCTCATTCCTCTTCCTTGGCTTCCCAAGCCCCCAGGGCGTCGCCAGGAGGAGGTCTGTGATTACAAACCCCTTCTGAAAACTCCCCAGGAAGCCTCCCCTTTTTCCGGAGAATCGAAGCGCTACCTGATTCCAATTCCCCTGCAAACTTCGTCCTCCAGAGTCGCCCGCCATCCCCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAG	-			P-0047852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	95	139	1	ENST00000304494.5:c.109_150+272del		p.X37_splice	ENST00000304494	NM_000077.4	37																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974405	21974718	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCATCTAATACAAATATGTTCCCCCCTTCAGATCTTCTCAGCATTCGAGAGATCTGTACGCGCGTGGCTCCTCATTCCTCTTCCTTGGCTTCCCAAGCCCCCAGGGCGTCGCCAGGAGGAGGTCTGTGATTACAAACCCCTTCTGAAAACTCCCCAGGAAGCCTCCCCTTTTTCCGGAGAATCGAAGCGCTACCTGATTCCAATTCCCCTGCAAACTTCGTCCTCCAGAGTCGCCCGCCATCCCCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAG	CCATCTAATACAAATATGTTCCCCCCTTCAGATCTTCTCAGCATTCGAGAGATCTGTACGCGCGTGGCTCCTCATTCCTCTTCCTTGGCTTCCCAAGCCCCCAGGGCGTCGCCAGGAGGAGGTCTGTGATTACAAACCCCTTCTGAAAACTCCCCAGGAAGCCTCCCCTTTTTCCGGAGAATCGAAGCGCTACCTGATTCCAATTCCCCTGCAAACTTCGTCCTCCAGAGTCGCCCGCCATCCCCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAG	-			P-0047852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	95	139	1	ENST00000304494.5:c.109_150+272del		p.X37_splice	ENST00000304494	NM_000077.4	37																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0047853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	297	543	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0047853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	472	729	2	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
CCND1	595	MSKCC	GRCh37	11	69465988	69465996	+	inframe_deletion	In_Frame_Del	DEL	GAGGAGGAG	GAGGAGGAG	-			P-0047853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	295	677	0	ENST00000227507.2:c.833_841del	p.Glu278_Glu280del	p.E278_E280del	ENST00000227507	NM_053056.2	276	GAGGAGGAG/-																																																																														
BLM	641	MSKCC	GRCh37	15	91341420	91341420	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	43	204	0	ENST00000355112.3:c.3211G>A	p.Asp1071Asn	p.D1071N	ENST00000355112	NM_000057.2	1071	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0047854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	367	589	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																														
PARK2	0	MSKCC	GRCh37	6	162394407	162394407	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	24	253	0	ENST00000366898.1:c.661G>T	p.Glu221Ter	p.E221*	ENST00000366898	NM_004562.2	221	Gaa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-			P-0047854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	184	275	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0047854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	516	504	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	194	554	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	62	349	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	111	306	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134977949	134977949	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56186270		P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	177	445	0	ENST00000398015.3:c.2942C>T	p.Thr981Met	p.T981M	ENST00000398015	NM_004441.4	981	aCg/aTg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056425	26056427	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs774779034		P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	86	319	0	ENST00000343677.2:c.230_232del	p.Asn77del	p.N77del	ENST00000343677	NM_005319.3	77	aACAgc/agc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591145	67591154	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TACTTGATGT	TACTTGATGT	-			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	30	235	0	ENST00000274335.5:c.1738_1745+2delTACTTGATGT		p.X580_splice	ENST00000274335		580																																																																															
APC	324	MSKCC	GRCh37	5	112170816	112170816	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	120	491	0	ENST00000257430.4:c.1912del	p.Ile638TyrfsTer8	p.I638Yfs*8	ENST00000257430	NM_000038.5	638	Ata/ta																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222282	2222282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	285	739	1	ENST00000326181.6:c.566G>A	p.Arg189Gln	p.R189Q	ENST00000326181	NM_032271.2	189	cGg/cAg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233193	69233193	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	19	235	1	ENST00000462284.1:c.1058T>A	p.Leu353Gln	p.L353Q	ENST00000462284	NM_002392.5	353	cTg/cAg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233201	69233201	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	24	227	0	ENST00000462284.1:c.1066T>A	p.Ser356Thr	p.S356T	ENST00000462284	NM_002392.5	356	Tca/Aca																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056432	26056432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	94	320	0	ENST00000343677.2:c.225A>T	p.Lys75Asn	p.K75N	ENST00000343677	NM_005319.3	75	aaA/aaT																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982963	201982963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	228	819	0	ENST00000359651.3:c.812G>C	p.Arg271Thr	p.R271T	ENST00000359651		271	aGa/aCa																																																																														
WT1	7490	MSKCC	GRCh37	11	32456573	32456573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	36	79	0	ENST00000332351.3:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000332351	NM_024426.4	107	Gac/Tac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864552	57864552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	201	970	0	ENST00000228682.2:c.2029G>C	p.Asp677His	p.D677H	ENST00000228682	NM_005269.2	677	Gat/Cat																																																																														
POLE	5426	MSKCC	GRCh37	12	133226071	133226071	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	98	917	0	ENST00000320574.5:c.3826A>C	p.Lys1276Gln	p.K1276Q	ENST00000320574	NM_006231.2	1276	Aag/Cag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435486	110435487	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	139	684	4	ENST00000375856.3:c.2914_2915delinsTT	p.Arg972Leu	p.R972L	ENST00000375856	NM_003749.2	972	CGg/TTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872616	37872616	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	97	1086	0	ENST00000269571.5:c.1576A>G	p.Thr526Ala	p.T526A	ENST00000269571		526	Acc/Gcc																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732254	74732254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	29	334	0	ENST00000359995.5:c.655G>T	p.Val219Leu	p.V219L	ENST00000359995	NM_001195427.1	219	Gtg/Ttg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221232	1221233	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	275	823	1	ENST00000326873.7:c.756_757del	p.Tyr253ProfsTer12	p.Y253Pfs*12	ENST00000326873	NM_000455.4	252	cTG/c																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11135010	11135010	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	214	708	0	ENST00000344626.4:c.2977G>T	p.Glu993Ter	p.E993*	ENST00000344626	NM_003072.3	993	Gag/Tag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470614	25470614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	281	805	0	ENST00000264709.3:c.860G>T	p.Gly287Val	p.G287V	ENST00000264709	NM_175629.2	287	gGc/gTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495203	212495203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	57	365	0	ENST00000342788.4:c.2063G>C	p.Arg688Thr	p.R688T	ENST00000342788	NM_005235.2	688	aGa/aCa																																																																														
BCL6	604	MSKCC	GRCh37	3	187447486	187447486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	92	824	0	ENST00000232014.4:c.707G>T	p.Arg236Met	p.R236M	ENST00000232014	NM_001130845.1	236	aGg/aTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593616	55593616	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	49	339	0	ENST00000288135.5:c.1682A>G	p.Glu561Gly	p.E561G	ENST00000288135	NM_000222.2	561	gAg/gGg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557964	187557964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	158	388	0	ENST00000441802.2:c.3747C>G	p.Phe1249Leu	p.F1249L	ENST00000441802	NM_005245.3	1249	ttC/ttG																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004246	150004246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	48	218	0	ENST00000253339.5:c.1979G>T	p.Arg660Leu	p.R660L	ENST00000253339		660	cGt/cTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873510	151873510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	140	503	0	ENST00000262189.6:c.9028G>T	p.Ala3010Ser	p.A3010S	ENST00000262189	NM_170606.2	3010	Gca/Tca																																																																														
ABL1	25	MSKCC	GRCh37	9	133753838	133753838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	137	677	0	ENST00000318560.5:c.1307G>A	p.Gly436Asp	p.G436D	ENST00000318560	NM_005157.4	436	gGc/gAc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841247	15841247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	16	264	0	ENST00000307771.7:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000307771	NM_005089.3	444	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	69	647	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652404	206652404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17021877		P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	62	872	4	ENST00000367120.3:c.1111G>A	p.Ala371Thr	p.A371T	ENST00000367120	NM_014002.3	371	Gcc/Acc																																																																														
TET1	80312	MSKCC	GRCh37	10	70442645	70442645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	49	503	0	ENST00000373644.4:c.4967G>A	p.Arg1656His	p.R1656H	ENST00000373644	NM_030625.2	1656	cGt/cAt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464892	120464892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	30	407	1	ENST00000256646.2:c.5180G>A	p.Arg1727His	p.R1727H	ENST00000256646	NM_024408.3	1727	cGt/cAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830288	72830288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	37	415	0	ENST00000268489.5:c.6293C>T	p.Ser2098Leu	p.S2098L	ENST00000268489	NM_006885.3	2098	tCg/tTg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097644	8097644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	29	324	0	ENST00000346208.3:c.26G>A	p.Arg9His	p.R9H	ENST00000346208		9	cGc/cAc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	138	1120	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
YAP1	10413	MSKCC	GRCh37	11	102056857	102056857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	26	358	0	ENST00000282441.5:c.797G>A	p.Arg266His	p.R266H	ENST00000282441	NM_001130145.2	266	cGt/cAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118371737	118371737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	29	285	0	ENST00000534358.1:c.6194G>A	p.Arg2065His	p.R2065H	ENST00000534358	NM_005933.3	2065	cGc/cAc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321321	1321321	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	30	594	0	ENST00000381566.1:c.434A>T	p.Asp145Val	p.D145V	ENST00000381566		145	gAt/gTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933839	39933839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	64	437	0	ENST00000378444.4:c.760G>A	p.Gly254Ser	p.G254S	ENST00000378444	NM_001123385.1	254	Ggt/Agt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214046	36214046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	74	1047	0	ENST00000222270.7:c.2872G>A	p.Gly958Ser	p.G958S	ENST00000222270	NM_014727.1	958	Ggc/Agc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139407859	139407859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	36	728	0	ENST00000277541.6:c.2338C>T	p.Arg780Trp	p.R780W	ENST00000277541	NM_017617.3	780	Cgg/Tgg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553542	106553542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	45	476	1	ENST00000369096.4:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000369096	NM_001198.3	503	Gcc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431834	49431834	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	31	747	0	ENST00000301067.7:c.9305del	p.Pro3102LeufsTer17	p.P3102Lfs*17	ENST00000301067	NM_003482.3	3102	cCt/ct																																																																														
POLE	5426	MSKCC	GRCh37	12	133249223	133249223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	38	632	0	ENST00000320574.5:c.1676G>A	p.Arg559Gln	p.R559Q	ENST00000320574	NM_006231.2	559	cGg/cAg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435825	110435825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	39	438	0	ENST00000375856.3:c.2576C>T	p.Thr859Met	p.T859M	ENST00000375856	NM_003749.2	859	aCg/aTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251145	99251145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	47	648	0	ENST00000268035.6:c.449G>A	p.Cys150Tyr	p.C150Y	ENST00000268035	NM_000875.3	150	tGt/tAt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647914	3647914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	79	1102	2	ENST00000294008.3:c.1250C>T	p.Pro417Leu	p.P417L	ENST00000294008	NM_032444.2	417	cCg/cTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89337277	89337277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	47	763	0	ENST00000301030.4:c.7754G>A	p.Arg2585His	p.R2585H	ENST00000301030	NM_001256183.1	2585	cGc/cAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533547	63533547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	57	975	0	ENST00000307078.5:c.1607C>T	p.Thr536Met	p.T536M	ENST00000307078	NM_004655.3	536	aCg/aTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210687	2210687	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	54	806	0	ENST00000398665.3:c.1184del	p.Arg395ProfsTer5	p.R395Pfs*5	ENST00000398665	NM_032482.2	395	cGc/cc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976450	25976450	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	37	408	0	ENST00000435504.4:c.1095del	p.Val366TrpfsTer19	p.V366Wfs*19	ENST00000435504		365	aaA/aa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204963	128204963	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	64	864	0	ENST00000341105.2:c.478A>G	p.Thr160Ala	p.T160A	ENST00000341105	NM_032638.4	160	Acc/Gcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541003	187541003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	16	383	0	ENST00000441802.2:c.6737C>T	p.Ala2246Val	p.A2246V	ENST00000441802	NM_005245.3	2246	gCc/gTc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31495409	31495409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	41	546	0	ENST00000344624.3:c.1739C>T	p.Pro580Leu	p.P580L	ENST00000344624		580	cCg/cTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976810	2976810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	61	953	0	ENST00000396946.4:c.1202A>G	p.Asp401Gly	p.D401G	ENST00000396946	NM_032415.4	401	gAc/gGc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395224	139395224	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	54	1000	0	ENST00000277541.6:c.5714A>G	p.Asp1905Gly	p.D1905G	ENST00000277541	NM_017617.3	1905	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121912651		P-0048219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	167	631	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100015	11100015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	96	681	0	ENST00000344626.4:c.1141C>T	p.Arg381Ter	p.R381*	ENST00000344626	NM_003072.3	381	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984490	72984490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	97	889	0	ENST00000268489.5:c.3094G>T	p.Val1032Leu	p.V1032L	ENST00000268489	NM_006885.3	1032	Gtg/Ttg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0048275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	81	601	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	24	405	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	67	1068	2	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	67	1068	2	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141526	11141526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	45	864	1	ENST00000344626.4:c.3503C>T	p.Ala1168Val	p.A1168V	ENST00000344626	NM_003072.3	1168	gCa/gTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0025930-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			421	91	204	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025930-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			264	177	463	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11270903	11270903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200402195		P-0025930-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			309	55	250	0	ENST00000361445.4:c.3622C>T	p.Arg1208Cys	p.R1208C	ENST00000361445	NM_004958.3	1208	Cgc/Tgc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31437377	31437377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025930-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			383	60	324	0	ENST00000344624.3:c.2911C>A	p.Leu971Met	p.L971M	ENST00000344624		971	Ctg/Atg																																																																														
NBN	4683	MSKCC	GRCh37	8	90976681	90976681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025930-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			938	60	285	0	ENST00000265433.3:c.951G>A	p.Met317Ile	p.M317I	ENST00000265433	NM_002485.4	317	atG/atA																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195115	123195115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025930-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			275	74	308	0	ENST00000218089.9:c.1458C>A	p.Asp486Glu	p.D486E	ENST00000218089	NM_001042749.1	486	gaC/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039030-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			185	170	532	11	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039030-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			128	148	410	6	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946355	2946355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039030-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			692	538	905	25	ENST00000396946.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000396946	NM_032415.4	1128	Gta/Ata																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111132	193111132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039030-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			155	140	426	6	ENST00000367435.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000367435	NM_024529.4	222	cGa/cAa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876540	35876540	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039030-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			226	111	568	8	ENST00000303115.3:c.1332T>G	p.Asn444Lys	p.N444K	ENST00000303115	NM_002185.3	444	aaT/aaG																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64286880	64286880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039030-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			151	94	399	1	ENST00000370651.3:c.95A>G	p.Lys32Arg	p.K32R	ENST00000370651	NM_003463.4	32	aAa/aGa																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540131	23540131	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039030-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			64	85	146	0	ENST00000380871.4:c.272C>G	p.Ala91Gly	p.A91G	ENST00000380871	NM_006167.3	91	gCa/gGa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289863	15289863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201680145		P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			933	139	879	0	ENST00000263388.2:c.3691C>T	p.Arg1231Cys	p.R1231C	ENST00000263388	NM_000435.2	1231	Cgt/Tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	49037966	49037966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	59	266	0	ENST00000267163.4:c.2206C>T	p.Gln736Ter	p.Q736*	ENST00000267163	NM_000321.2	736	Cag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984860	9984860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs77772378		P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	79	435	0	ENST00000330684.3:c.1105G>A	p.Asp369Asn	p.D369N	ENST00000330684	NM_001134407.1	369	Gac/Aac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188836	32188836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			852	135	739	0	ENST00000375023.3:c.718C>T	p.Pro240Ser	p.P240S	ENST00000375023	NM_004557.3	240	Cct/Tct																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041554	14041554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	50	447	0	ENST00000311895.7:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000311895	NM_005236.2	701	Cgt/Tgt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28963960	28963960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	25	308	0	ENST00000282397.4:c.1942C>T	p.Leu648Phe	p.L648F	ENST00000282397	NM_002019.4	648	Ctc/Ttc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673803	30673803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	61	382	0	ENST00000376406.3:c.3157C>T	p.Leu1053Phe	p.L1053F	ENST00000376406	NM_014641.2	1053	Ctt/Ttt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500886	8500886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			529	52	452	1	ENST00000356435.5:c.1996C>T	p.Pro666Ser	p.P666S	ENST00000356435		666	Cct/Tct																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111000	193111000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			69	27	180	0	ENST00000367435.3:c.533C>T	p.Ser178Leu	p.S178L	ENST00000367435	NM_024529.4	178	tCa/tTa																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015115	37015115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			709	86	510	0	ENST00000358127.4:c.289G>A	p.Glu97Lys	p.E97K	ENST00000358127	NM_001280556.1	97	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	94	292	0				ENST00000310581	NM_198253.2																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50467924	50467924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			744	77	571	0	ENST00000331340.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000331340	NM_006060.4	387	Gag/Aag																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681434	88681434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	68	557	0	ENST00000372037.3:c.1324C>T	p.Arg442Cys	p.R442C	ENST00000372037	NM_004329.2	442	Cgt/Tgt																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154321	2154321	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150866176		P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			624	141	892	0	ENST00000434045.2:c.607G>A	p.Glu203Lys	p.E203K	ENST00000434045	NM_001127598.1	203	Gag/Aag																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191243	185191243	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	85	491	0	ENST00000265026.3:c.2124G>A	p.Trp708Ter	p.W708*	ENST00000265026	NM_004721.4	708	tgG/tgA																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68331729	68331729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	31	184	1	ENST00000487270.1:c.325C>T	p.Pro109Ser	p.P109S	ENST00000487270	NM_133509.3	109	Cca/Tca																																																																														
CASP8	841	MSKCC	GRCh37	2	202149901	202149901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	70	524	2	ENST00000358485.4:c.1342C>T	p.Gln448Ter	p.Q448*	ENST00000358485	NM_001080125.1	448	Caa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743942	40743942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	55	387	0	ENST00000373198.4:c.3053G>A	p.Arg1018Gln	p.R1018Q	ENST00000373198	NM_133170.3	1018	cGa/cAa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086133	16086133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	40	494	0	ENST00000281043.3:c.1309G>A	p.Glu437Lys	p.E437K	ENST00000281043	NM_005378.4	437	Gag/Aag																																																																														
KIT	3815	MSKCC	GRCh37	4	55589797	55589797	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	64	396	0	ENST00000288135.5:c.1279C>T	p.Gln427Ter	p.Q427*	ENST00000288135	NM_000222.2	427	Caa/Taa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729162	66729162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	97	537	0	ENST00000307102.5:c.370C>T	p.Pro124Ser	p.P124S	ENST00000307102	NM_002755.3	124	Ccg/Tcg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876265	35876265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	110	450	0	ENST00000303115.3:c.1057G>A	p.Asp353Asn	p.D353N	ENST00000303115	NM_002185.3	353	Gat/Aat																																																																														
INHA	3623	MSKCC	GRCh37	2	220440081	220440081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	124	750	0	ENST00000243786.2:c.934C>T	p.Pro312Ser	p.P312S	ENST00000243786	NM_002191.3	312	Cct/Tct																																																																														
AXL	558	MSKCC	GRCh37	19	41744378	41744378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	75	580	0	ENST00000301178.4:c.998C>T	p.Pro333Leu	p.P333L	ENST00000301178	NM_021913.4	333	cCc/cTc																																																																														
STK19	8859	MSKCC	GRCh37	6	31940120	31940120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			988	109	751	2	ENST00000375331.2:c.262G>A	p.Glu88Lys	p.E88K	ENST00000375331	NM_004197.1	88	Gaa/Aaa																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197187	26197187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	76	475	0	ENST00000356476.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000356476		98	Gag/Aag																																																																														
LYN	4067	MSKCC	GRCh37	8	56912075	56912075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	84	521	2	ENST00000519728.1:c.1303G>A	p.Glu435Lys	p.E435K	ENST00000519728	NM_002350.3	435	Gaa/Aaa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432368	432368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			119	18	168	0	ENST00000399788.2:c.2155C>T	p.Arg719Cys	p.R719C	ENST00000399788	NM_001042603.1	719	Cgc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790129	40790129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	121	579	0	ENST00000373198.4:c.2602C>T	p.Pro868Ser	p.P868S	ENST00000373198	NM_133170.3	868	Ccc/Tcc																																																																														
PAK7	0	MSKCC	GRCh37	20	9520138	9520138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	116	368	0	ENST00000353224.5:c.2131C>T	p.Pro711Ser	p.P711S	ENST00000353224	NM_177990.2	711	Ccc/Tcc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984094	2984094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	269	496	0	ENST00000396946.4:c.436G>A	p.Asp146Asn	p.D146N	ENST00000396946	NM_032415.4	146	Gac/Aac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405911	157405911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			555	85	473	0	ENST00000346085.5:c.2153C>T	p.Ser718Leu	p.S718L	ENST00000346085	NM_020732.3	718	tCg/tTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509537	106509537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	64	494	0	ENST00000359195.3:c.1531G>A	p.Glu511Lys	p.E511K	ENST00000359195	NM_002649.2	511	Gag/Aag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519330	176519330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			728	195	621	0	ENST00000292408.4:c.736C>T	p.Pro246Ser	p.P246S	ENST00000292408	NM_213647.1	246	Ccg/Tcg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141572607	141572607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	210	605	0	ENST00000220592.5:c.463C>T	p.Pro155Ser	p.P155S	ENST00000220592	NM_012154.3	155	Cct/Tct																																																																														
ATRX	546	MSKCC	GRCh37	X	76937185	76937185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			127	31	261	0	ENST00000373344.5:c.3563C>T	p.Ser1188Phe	p.S1188F	ENST00000373344	NM_000489.3	1188	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391980	139391980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	381	725	0	ENST00000277541.6:c.6211G>A	p.Glu2071Lys	p.E2071K	ENST00000277541	NM_017617.3	2071	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445629	49445629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			838	126	761	0	ENST00000301067.7:c.1837G>A	p.Glu613Lys	p.E613K	ENST00000301067	NM_003482.3	613	Gag/Aag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226890	2226890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	71	262	0	ENST00000398665.3:c.4370C>T	p.Ser1457Phe	p.S1457F	ENST00000398665	NM_032482.2	1457	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424092	49424092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			925	129	703	0	ENST00000301067.7:c.13970C>G	p.Ser4657Cys	p.S4657C	ENST00000301067	NM_003482.3	4657	tCt/tGt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533069	63533069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	110	587	0	ENST00000307078.5:c.1825C>T	p.Pro609Ser	p.P609S	ENST00000307078	NM_004655.3	609	Ccc/Tcc																																																																														
TET2	54790	MSKCC	GRCh37	4	106196370	106196370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	49	382	0	ENST00000380013.4:c.4703C>T	p.Pro1568Leu	p.P1568L	ENST00000380013	NM_001127208.2	1568	cCa/cTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295201	1295201	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	57	223	1				ENST00000310581	NM_198253.2																																																																																
NUP93	9688	MSKCC	GRCh37	16	56878417	56878417	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs190188561		P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	45	350	1	ENST00000308159.5:c.2356C>T	p.Arg786Ter	p.R786*	ENST00000308159	NM_014669.4	786	Cga/Tga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416782	121416782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	143	746	1	ENST00000257555.6:c.211G>A	p.Glu71Lys	p.E71K	ENST00000257555		71	Gag/Aag																																																																														
MRE11A	0	MSKCC	GRCh37	11	94212886	94212886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	22	308	0	ENST00000323929.3:c.356C>T	p.Ser119Leu	p.S119L	ENST00000323929	NM_005591.3	119	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577101	7577102	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			517	249	610	0	ENST00000269305.4:c.836_837delinsAA	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGG/gAA																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287215	33287215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			675	73	489	0	ENST00000374542.5:c.1882C>T	p.Pro628Ser	p.P628S	ENST00000374542	NM_001141970.1	628	Ccc/Tcc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865899	56865899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	47	291	0	ENST00000308159.5:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000308159	NM_014669.4	411	Gag/Aag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11189853	11189853	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	70	541	0	ENST00000361445.4:c.5656C>T	p.Gln1886Ter	p.Q1886*	ENST00000361445	NM_004958.3	1886	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11313919	11313920	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			518	59	499	0	ENST00000361445.4:c.816_817delinsTT	p.Arg273Ter	p.R273*	ENST00000361445	NM_004958.3	272	gtCCga/gtTTga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260270	16260270	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	71	464	0	ENST00000375759.3:c.7535C>G	p.Ser2512Cys	p.S2512C	ENST00000375759	NM_015001.2	2512	tCt/tGt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798316	45798316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			897	145	716	0	ENST00000372115.3:c.578C>T	p.Thr193Ile	p.T193I	ENST00000372115	NM_001048171.1	193	aCc/aTc																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733407	85733408	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	38	374	0	ENST00000370580.1:c.604_605delinsTT	p.Pro202Phe	p.P202F	ENST00000370580	NM_003921.4	202	CCt/TTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458886	120458887	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	82	605	1	ENST00000256646.2:c.6458_6459delinsTT	p.Ser2153Phe	p.S2153F	ENST00000256646	NM_024408.3	2153	tCC/tTT																																																																														
RFWD2	0	MSKCC	GRCh37	1	176055001	176055001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	44	421	0	ENST00000367669.3:c.1052G>A	p.Ser351Asn	p.S351N	ENST00000367669	NM_022457.5	351	aGc/aAc																																																																														
MDM4	4194	MSKCC	GRCh37	1	204515994	204515994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	76	258	0	ENST00000367182.3:c.892G>A	p.Val298Ile	p.V298I	ENST00000367182	NM_001278516.1	298	Gtt/Att																																																																														
RET	5979	MSKCC	GRCh37	10	43606835	43606835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			782	96	870	0	ENST00000355710.3:c.1444C>T	p.His482Tyr	p.H482Y	ENST00000355710	NM_020975.4	482	Cac/Tac																																																																														
RET	5979	MSKCC	GRCh37	10	43615185	43615185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			624	103	740	0	ENST00000355710.3:c.2599G>A	p.Glu867Lys	p.E867K	ENST00000355710	NM_020975.4	867	Gag/Aag																																																																														
ATM	472	MSKCC	GRCh37	11	108119706	108119706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			172	30	163	0	ENST00000278616.4:c.1112C>G	p.Thr371Ser	p.T371S	ENST00000278616	NM_000051.3	371	aCt/aGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375551	118375551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			207	68	276	0	ENST00000534358.1:c.8944C>T	p.Pro2982Ser	p.P2982S	ENST00000534358	NM_005933.3	2982	Cca/Tca																																																																														
CBL	867	MSKCC	GRCh37	11	119149224	119149224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	59	464	0	ENST00000264033.4:c.1232C>T	p.Ser411Leu	p.S411L	ENST00000264033	NM_005188.3	411	tCa/tTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246119	46246119	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	26	262	0	ENST00000334344.6:c.4213G>C	p.Asp1405His	p.D1405H	ENST00000334344	NM_152641.2	1405	Gat/Cat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427513	49427514	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			609	93	628	0	ENST00000301067.7:c.10974_10975delinsTT	p.Pro3659Ser	p.P3659S	ENST00000301067	NM_003482.3	3658	acCCct/acTTct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427976	49427977	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			702	118	675	0	ENST00000301067.7:c.10613_10614delinsTT	p.Ser3538Phe	p.S3538F	ENST00000301067	NM_003482.3	3538	tCC/tTT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442485	49442485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	58	473	0	ENST00000301067.7:c.4088C>T	p.Thr1363Ile	p.T1363I	ENST00000301067	NM_003482.3	1363	aCc/aTc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563180	21563180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			810	175	865	0	ENST00000382592.4:c.739C>T	p.Pro247Ser	p.P247S	ENST00000382592	NM_014572.2	247	Ccg/Tcg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21620029	21620029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			644	105	572	0	ENST00000382592.4:c.137C>T	p.Ser46Phe	p.S46F	ENST00000382592	NM_014572.2	46	tCc/tTc																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281897	49281897	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61735167		P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	61	478	0	ENST00000282018.3:c.944G>A	p.Arg315Lys	p.R315K	ENST00000282018	NM_020377.2	315	aGa/aAa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066952	30066952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	44	277	0	ENST00000331968.5:c.2179G>A	p.Asp727Asn	p.D727N	ENST00000331968	NM_002742.2	727	Gat/Aat																																																																														
AKT1	207	MSKCC	GRCh37	14	105242062	105242062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			837	153	804	0	ENST00000349310.3:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000349310	NM_001014432.1	121	cGg/cAg																																																																														
MGA	23269	MSKCC	GRCh37	15	41989112	41989112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	44	398	0	ENST00000219905.7:c.1904C>T	p.Ser635Phe	p.S635F	ENST00000219905	NM_001164273.1	635	tCt/tTt																																																																														
MGA	23269	MSKCC	GRCh37	15	42000314	42000314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	23	322	0	ENST00000219905.7:c.2333C>T	p.Pro778Leu	p.P778L	ENST00000219905	NM_001164273.1	778	cCc/cTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42019600	42019600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	29	341	0	ENST00000219905.7:c.3653C>T	p.Pro1218Leu	p.P1218L	ENST00000219905	NM_001164273.1	1218	cCt/cTt																																																																														
MGA	23269	MSKCC	GRCh37	15	42058462	42058462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	36	361	0	ENST00000219905.7:c.8182C>T	p.Pro2728Ser	p.P2728S	ENST00000219905	NM_001164273.1	2728	Cca/Tca																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762100	43762101	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			616	56	576	2	ENST00000382044.4:c.1344_1345delinsTT	p.Pro449Ser	p.P449S	ENST00000382044	NM_001141980.1	448	ttCCct/ttTTct																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632685	3632686	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	179	669	2	ENST00000294008.3:c.5162_5163delinsAT	p.Ser1721Tyr	p.S1721Y	ENST00000294008	NM_032444.2	1721	tCC/tAT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832852	3832852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	57	454	0	ENST00000262367.5:c.1406C>T	p.Ser469Phe	p.S469F	ENST00000262367	NM_004380.2	469	tCt/tTt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56839444	56839445	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	163	475	1	ENST00000308159.5:c.389_390delinsAA	p.Arg130Gln	p.R130Q	ENST00000308159	NM_014669.4	130	cGG/cAA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992090	72992090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	112	666	0	ENST00000268489.5:c.1955C>T	p.Ser652Phe	p.S652F	ENST00000268489	NM_006885.3	652	tCc/tTc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89824992	89824992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	89	472	0	ENST00000389301.3:c.2974C>T	p.His992Tyr	p.H992Y	ENST00000389301	NM_000135.2	992	Cac/Tac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89825043	89825043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			666	133	520	0	ENST00000389301.3:c.2923G>A	p.Gly975Arg	p.G975R	ENST00000389301	NM_000135.2	975	Gga/Aga																																																																														
STAT3	6774	MSKCC	GRCh37	17	40500473	40500473	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	94	473	0	ENST00000264657.5:c.62T>C	p.Leu21Pro	p.L21P	ENST00000264657	NM_139276.2	21	cTc/cCc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59878814	59878814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			137	18	192	0	ENST00000259008.2:c.940C>T	p.His314Tyr	p.H314Y	ENST00000259008	NM_032043.2	314	Cat/Tat																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622127	1622128	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			754	124	787	0	ENST00000344749.5:c.747_748delinsTT	p.Pro250Ser	p.P250S	ENST00000344749	NM_001136139.2	249	ctCCcg/ctTTcg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5225794	5225794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			790	129	732	0	ENST00000357368.4:c.2438C>T	p.Thr813Ile	p.T813I	ENST00000357368	NM_002850.3	813	aCc/aTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10249236	10249236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			712	90	649	0	ENST00000340748.4:c.3946C>G	p.Leu1316Val	p.L1316V	ENST00000340748		1316	Ctg/Gtg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355315	15355315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	66	398	0	ENST00000263377.2:c.2308C>T	p.Pro770Ser	p.P770S	ENST00000263377	NM_058243.2	770	Ccg/Tcg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212277	36212278	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	141	699	1	ENST00000222270.7:c.2028_2029delinsTT	p.Pro677Ser	p.P677S	ENST00000222270	NM_014727.1	676	gcCCct/gcTTct																																																																														
ERF	2077	MSKCC	GRCh37	19	42753464	42753464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			864	182	899	0	ENST00000222329.4:c.800C>T	p.Ala267Val	p.A267V	ENST00000222329	NM_006494.2	267	gCt/gTt																																																																														
ALK	238	MSKCC	GRCh37	2	29498338	29498339	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	53	475	0	ENST00000389048.3:c.1841_1842delinsAA	p.Trp614Ter	p.W614*	ENST00000389048	NM_004304.4	614	tGG/tAA																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46588066	46588066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	119	571	0	ENST00000263734.3:c.616C>T	p.Pro206Ser	p.P206S	ENST00000263734	NM_001430.4	206	Cct/Tct																																																																														
IDH1	3417	MSKCC	GRCh37	2	209110046	209110046	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	28	365	0	ENST00000345146.2:c.517G>C	p.Glu173Gln	p.E173Q	ENST00000345146	NM_005896.2	173	Gaa/Caa																																																																														
PAK7	0	MSKCC	GRCh37	20	9560890	9560890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	148	435	1	ENST00000353224.5:c.892C>T	p.Pro298Ser	p.P298S	ENST00000353224	NM_177990.2	298	Cca/Tca																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023883	31023883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11549643		P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	150	583	0	ENST00000375687.4:c.3368C>T	p.Pro1123Leu	p.P1123L	ENST00000375687	NM_015338.5	1123	cCa/cTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980816	40980816	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	176	576	0	ENST00000373198.4:c.1670A>T	p.Tyr557Phe	p.Y557F	ENST00000373198	NM_133170.3	557	tAc/tTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41543945	41543945	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			657	96	533	0	ENST00000263253.7:c.2236A>C	p.Asn746His	p.N746H	ENST00000263253	NM_001429.3	746	Aac/Cac																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458492	12458492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	81	527	0	ENST00000287820.6:c.1109C>T	p.Ser370Phe	p.S370F	ENST00000287820	NM_015869.4	370	tCc/tTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164123	47164124	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	18	271	1	ENST00000409792.3:c.2002_2003delinsTT	p.Pro668Phe	p.P668F	ENST00000409792	NM_014159.6	668	CCc/TTc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013725	170013725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	49	300	0	ENST00000295797.4:c.1444C>T	p.Pro482Ser	p.P482S	ENST00000295797	NM_002740.5	482	Cca/Tca																																																																														
WHSC1	0	MSKCC	GRCh37	4	1940224	1940225	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	45	328	0	ENST00000382891.5:c.1721_1722delinsTT	p.Ala574Val	p.A574V	ENST00000382891	NM_133335.3	574	gCC/gTT																																																																														
KIT	3815	MSKCC	GRCh37	4	55604689	55604689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	88	487	0	ENST00000288135.5:c.2897C>T	p.Ser966Phe	p.S966F	ENST00000288135	NM_000222.2	966	tCc/tTc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189461	56189461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	97	437	0	ENST00000399503.3:c.4493C>T	p.Pro1498Leu	p.P1498L	ENST00000399503	NM_005921.1	1498	cCa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112173755	112173755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	28	281	0	ENST00000257430.4:c.2464C>T	p.Leu822Phe	p.L822F	ENST00000257430	NM_000038.5	822	Ctt/Ttt																																																																														
APC	324	MSKCC	GRCh37	5	112175372	112175373	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	26	237	2	ENST00000257430.4:c.4081_4082delinsTT	p.Pro1361Phe	p.P1361F	ENST00000257430	NM_000038.5	1361	CCc/TTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149447878	149447878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	103	676	0	ENST00000286301.3:c.1526C>T	p.Pro509Leu	p.P509L	ENST00000286301	NM_005211.3	509	cCc/cTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497332	149497332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	86	609	0	ENST00000261799.4:c.2986C>T	p.His996Tyr	p.H996Y	ENST00000261799	NM_002609.3	996	Cat/Tat																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523699	176523699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	139	831	0	ENST00000292408.4:c.2110G>A	p.Glu704Lys	p.E704K	ENST00000292408	NM_213647.1	704	Gag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665475	176665475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			675	57	386	0	ENST00000439151.2:c.4159C>T	p.Leu1387Phe	p.L1387F	ENST00000439151	NM_022455.4	1387	Ctt/Ttt																																																																														
E2F3	1871	MSKCC	GRCh37	6	20490507	20490507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	106	501	0	ENST00000346618.3:c.1244C>T	p.Pro415Leu	p.P415L	ENST00000346618	NM_001949.4	415	cCt/cTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163315	32163315	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	132	783	0	ENST00000375023.3:c.5911T>G	p.Cys1971Gly	p.C1971G	ENST00000375023	NM_004557.3	1971	Tgc/Ggc																																																																														
FYN	2534	MSKCC	GRCh37	6	112020788	112020788	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	87	366	0	ENST00000368678.4:c.783G>A	p.Trp261Ter	p.W261*	ENST00000368678		261	tgG/tgA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117665230	117665230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			143	10	212	0	ENST00000368508.3:c.4517G>A	p.Arg1506Lys	p.R1506K	ENST00000368508	NM_002944.2	1506	aGa/aAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444360	50444360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	166	313	0	ENST00000331340.3:c.290G>A	p.Arg97Lys	p.R97K	ENST00000331340	NM_006060.4	97	aGg/aAg																																																																														
HGF	3082	MSKCC	GRCh37	7	81359065	81359065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	47	397	0	ENST00000222390.5:c.896C>T	p.Pro299Leu	p.P299L	ENST00000222390	NM_000601.4	299	cCt/cTt																																																																														
MET	4233	MSKCC	GRCh37	7	116339466	116339466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	70	308	0	ENST00000397752.3:c.328G>T	p.Gly110Cys	p.G110C	ENST00000397752	NM_000245.2	110	Ggt/Tgt																																																																														
MET	4233	MSKCC	GRCh37	7	116380952	116380952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			724	92	593	0	ENST00000397752.3:c.1574C>T	p.Ser525Phe	p.S525F	ENST00000397752	NM_000245.2	525	tCc/tTc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852143	128852143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			887	151	890	0	ENST00000249373.3:c.2215C>T	p.Pro739Ser	p.P739S	ENST00000249373	NM_005631.4	739	Cca/Tca																																																																														
BRAF	673	MSKCC	GRCh37	7	140549967	140549967	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	26	312	0	ENST00000288602.6:c.184G>C	p.Glu62Gln	p.E62Q	ENST00000288602	NM_004333.4	62	Gag/Cag																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38272347	38272347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	169	582	0	ENST00000425967.3:c.2020G>A	p.Gly674Ser	p.G674S	ENST00000425967	NM_001174067.1	674	Ggc/Agc																																																																														
SYK	6850	MSKCC	GRCh37	9	93624594	93624595	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	71	456	2	ENST00000375746.1:c.685_686delinsTT	p.Pro229Phe	p.P229F	ENST00000375746	NM_001174167.1	229	CCc/TTc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760673	133760673	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			703	316	857	0	ENST00000318560.5:c.2996C>G	p.Ser999Cys	p.S999C	ENST00000318560	NM_005157.4	999	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047400-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	146	783	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047400-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	117	806	1	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047400-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	117	806	1	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570097	212570097	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047400-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	39	315	0	ENST00000342788.4:c.1144G>T	p.Glu382Ter	p.E382*	ENST00000342788	NM_005235.2	382	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0047400-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	80	522	0				ENST00000310581	NM_198253.2																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55133517	55133517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047400-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			374	63	436	0	ENST00000257290.5:c.821C>T	p.Thr274Ile	p.T274I	ENST00000257290	NM_006206.4	274	aCt/aTt																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868406	117868407	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0047400-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			361	149	374	0	ENST00000297338.2:c.935_936insA	p.Val313CysfsTer2	p.V313Cfs*2	ENST00000297338	NM_006265.2	312	act/acAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0047579-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	38	510	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047579-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			276	39	589	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577533	7577570	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACAC	GCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACAC	-			P-0047579-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	41	678	0	ENST00000269305.4:c.711_748del	p.Met237IlefsTer14	p.M237Ifs*14	ENST00000269305	NM_001126112.2	237	atGTGTAACAGTTCCTGCATGGGCGGCATGAACCGGAGGCcc/atcc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061233	38061233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	224	979	0	ENST00000250448.2:c.756C>A	p.Asn252Lys	p.N252K	ENST00000250448	NM_004496.3	252	aaC/aaA																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657663	37657666	+	frameshift_variant	Frame_Shift_Del	DEL	TAAG	TAAG	-			P-0047762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	49	384	0	ENST00000447079.4:c.2581_2584del	p.Lys861ValfsTer6	p.K861Vfs*6	ENST00000447079	NM_015083.1	860	atTAAG/at																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981527	70981527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1317	302	1141	1	ENST00000276594.2:c.569A>G	p.Lys190Arg	p.K190R	ENST00000276594	NM_024504.3	190	aAg/aGg																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032068	26032068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	11	460	0	ENST00000244661.2:c.221A>G	p.Glu74Gly	p.E74G	ENST00000244661	NM_003537.3	74	gAa/gGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	216	856	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193107258	193107258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	53	253	0	ENST00000367435.3:c.467G>A	p.Arg156His	p.R156H	ENST00000367435	NM_024529.4	156	cGt/cAt																																																																														
SRC	6714	MSKCC	GRCh37	20	36031585	36031585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1230	157	905	1	ENST00000358208.4:c.1414C>T	p.Arg472Cys	p.R472C	ENST00000358208		472	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212248	5212248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	329	831	2	ENST00000357368.4:c.4783C>T	p.Arg1595Cys	p.R1595C	ENST00000357368	NM_002850.3	1595	Cgc/Tgc																																																																														
STK40	83931	MSKCC	GRCh37	1	36820004	36820004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	239	590	0	ENST00000373129.3:c.584A>G	p.His195Arg	p.H195R	ENST00000373129	NM_032017.1	195	cAc/cGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29552197	29552197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	89	389	0	ENST00000358273.4:c.1930T>C	p.Ser644Pro	p.S644P	ENST00000358273	NM_001042492.2	644	Tcc/Ccc																																																																														
ATRX	546	MSKCC	GRCh37	X	76940042	76940042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	113	274	0	ENST00000373344.5:c.706C>T	p.His236Tyr	p.H236Y	ENST00000373344	NM_000489.3	236	Cat/Tat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0047767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	24	573	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	11	358	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094488	27094488	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0047767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	28	385	0	ENST00000324856.7:c.3196C>T	p.Gln1066Ter	p.Q1066*	ENST00000324856	NM_006015.4	1066	Cag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41219703	41219703	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	21	267	0	ENST00000357654.3:c.4996T>G	p.Tyr1666Asp	p.Y1666D	ENST00000357654	NM_007294.3	1666	Tac/Gac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	41	337	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	74	374	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	32	275	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120199	70120199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	154	653	0	ENST00000245479.2:c.1201C>T	p.Gln401Ter	p.Q401*	ENST00000245479	NM_000346.3	401	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653867	89653867	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	33	291	0	ENST00000371953.3:c.164+1G>T		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																															
APC	324	MSKCC	GRCh37	5	112151191	112151191	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	41	299	0	ENST00000257430.4:c.835-1G>A		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129101	152129104	+	missense_variant	Missense_Mutation	ONP	CCAA	CCAA	ATAT			P-0047770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	46	975	2	ENST00000206249.3:c.54_57delinsATAT	p.Gln19Tyr	p.Q19Y	ENST00000206249	NM_000125.3	18	atCCAA/atATAT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	95	342	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	169	604	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	242	357	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577101	7577101	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	428	842	0	ENST00000269305.4:c.837del	p.Arg280GlufsTer65	p.R280Efs*65	ENST00000269305	NM_001126112.2	279	ggG/gg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10254578	10254578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	44	618	0	ENST00000340748.4:c.2932G>A	p.Asp978Asn	p.D978N	ENST00000340748		978	Gac/Aac																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50482369	50482369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	94	519	0	ENST00000394963.4:c.720G>T	p.Leu240Phe	p.L240F	ENST00000394963	NM_003076.4	240	ttG/ttT																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332540	153332541	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0047784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	173	364	0	ENST00000281708.4:c.415_416del	p.His139TyrfsTer2	p.H139Yfs*2	ENST00000281708	NM_033632.3	139	CAt/t																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045855	26045855	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	88	578	1	ENST00000540144.1:c.217C>T	p.Arg73Ter	p.R73*	ENST00000540144	NM_003531.2	73	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0047788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	1538	587	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	1467	604	1	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858414	9858414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	87	430	0	ENST00000330684.3:c.2987T>C	p.Val996Ala	p.V996A	ENST00000330684	NM_001134407.1	996	gTg/gCg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240998	53240998	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	149	283	0	ENST00000375401.3:c.1213A>G	p.Lys405Glu	p.K405E	ENST00000375401	NM_004187.3	405	Aaa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	120	334	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	470	704	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	62	364	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0047792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	83	389	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922973	44922973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	134	259	0	ENST00000377967.4:c.1834C>T	p.Arg612Ter	p.R612*	ENST00000377967	NM_021140.2	612	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	65	378	1	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88635839	88635843	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CAAGG	CAAGG	-			P-0047792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	58	427	0	ENST00000372037.3:c.64_67+1del		p.X22_splice	ENST00000372037	NM_004329.2	22																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32166772	32166780	+	inframe_deletion	In_Frame_Del	DEL	CGAGTGAAA	CGAGTGAAA	-			P-0047792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	201	943	0	ENST00000375023.3:c.4458_4466del	p.Phe1487_Arg1489del	p.F1487_R1489del	ENST00000375023	NM_004557.3	1486	ggTTTCACTCGa/gga																																																																														
RB1	5925	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	15	118	0	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578450	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0047808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	290	832	11	ENST00000269305.4:c.480_481delinsTT	p.Met160_Ala161delinsIleSer	p.M160_A161delinsIS	ENST00000269305	NM_001126112.2	160	atGGcc/atTTcc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715823	18715823	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	45	169	2	ENST00000266497.5:c.3654T>G	p.Ser1218Arg	p.S1218R	ENST00000266497		1218	agT/agG																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786796	3786796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	79	324	2	ENST00000262367.5:c.4415G>T	p.Trp1472Leu	p.W1472L	ENST00000262367	NM_004380.2	1472	tGg/tTg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805552	46805552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	319	853	9	ENST00000290295.7:c.404G>T	p.Gly135Val	p.G135V	ENST00000290295	NM_006361.5	135	gGa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	115	322	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507429	8507429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	62	213	0	ENST00000356435.5:c.1549G>A	p.Gly517Arg	p.G517R	ENST00000356435		517	Ggg/Agg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023064	27023064	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	31	79	0	ENST00000324856.7:c.172del	p.Ser58AlafsTer43	p.S58Afs*43	ENST00000324856	NM_006015.4	57	gAa/ga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117785	70117785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	140	775	1	ENST00000245479.2:c.253G>A	p.Asp85Asn	p.D85N	ENST00000245479	NM_000346.3	85	Gac/Aac																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948788	17948788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	90	678	0	ENST00000458235.1:c.1654G>A	p.Glu552Lys	p.E552K	ENST00000458235	NM_000215.3	552	Gag/Aag																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42851118	42851118	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	26	235	0	ENST00000398585.3:c.775T>G	p.Tyr259Asp	p.Y259D	ENST00000398585	NM_001135099.1	259	Tat/Gat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707603	176707603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	107	418	0	ENST00000439151.2:c.5660C>T	p.Ala1887Val	p.A1887V	ENST00000439151	NM_022455.4	1887	gCa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	189	304	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29663491	29663491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	50	271	1	ENST00000358273.4:c.6147G>T	p.Lys2049Asn	p.K2049N	ENST00000358273	NM_001042492.2	2049	aaG/aaT																																																																														
MPL	4352	MSKCC	GRCh37	1	43805034	43805037	+	frameshift_variant	Frame_Shift_Del	DEL	AGTG	AGTG	-			P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	94	673	0	ENST00000372470.3:c.485_488del	p.Ser162IlefsTer3	p.S162Ifs*3	ENST00000372470	NM_005373.2	162	AGTGat/at																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258708	115258709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	55	301	0	ENST00000369535.4:c.73dup	p.Gln25ProfsTer7	p.Q25Pfs*7	ENST00000369535	NM_002524.4	25	cag/cCag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38944635	38944635	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	43	223	0	ENST00000357387.3:c.4826G>C	p.Arg1609Pro	p.R1609P	ENST00000357387	NM_152756.3	1609	cGt/cCt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984127	2984127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	146	509	0	ENST00000396946.4:c.403G>A	p.Val135Ile	p.V135I	ENST00000396946	NM_032415.4	135	Gtc/Atc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59937204	59937204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	44	352	0	ENST00000259008.2:c.158G>T	p.Ser53Ile	p.S53I	ENST00000259008	NM_032043.2	53	aGc/aTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425558	49425587	+	inframe_deletion	In_Frame_Del	DEL	TGGAGGTGTGGGATGGACAGGGCCAAGGAC	TGGAGGTGTGGGATGGACAGGGCCAAGGAC	-			P-0047820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	54	902	0	ENST00000301067.7:c.12901_12930del	p.Val4301_Pro4310del	p.V4301_P4310del	ENST00000301067	NM_003482.3	4301	GTCCTTGGCCCTGTCCATCCCACACCTCCA/-																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439157	52439157	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	52	651	0	ENST00000460680.1:c.1085del	p.Asp362AlafsTer68	p.D362Afs*68	ENST00000460680	NM_004656.3	362	gAc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0047823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	103	416	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952048	178952048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	90	302	0	ENST00000263967.3:c.3103G>A	p.Ala1035Thr	p.A1035T	ENST00000263967	NM_006218.2	1035	Gct/Act																																																																														
ETV6	2120	MSKCC	GRCh37	12	12006424	12006424	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	151	499	0	ENST00000396373.4:c.392del	p.Ser131TyrfsTer78	p.S131Yfs*78	ENST00000396373	NM_001987.4	131	tCa/ta																																																																														
BLM	641	MSKCC	GRCh37	15	91346831	91346831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	98	350	0	ENST00000355112.3:c.3443del	p.Lys1148SerfsTer2	p.K1148Sfs*2	ENST00000355112	NM_000057.2	1147	Aaa/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	32	360	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	51	598	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0047845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	48	616	1	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	42	330	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	17	266	0	ENST00000342988.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000342988	NM_005359.5	493	gAt/gGt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119808	70119808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	51	519	0	ENST00000245479.2:c.811del	p.Arg271AlafsTer8	p.R271Afs*8	ENST00000245479	NM_000346.3	270	ttC/tt																																																																														
STK11	6794	MSKCC	GRCh37	19	1218365	1218440	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATCATCCTGACGTTGGGTCGGCTGATACACCCCTGTCCTCTCTGTCCCAGGGAAATTCAACTACTGAGGAGGTTA	CATCATCCTGACGTTGGGTCGGCTGATACACCCCTGTCCTCTCTGTCCCAGGGAAATTCAACTACTGAGGAGGTTA	-			P-0047846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	27	190	0	ENST00000326873.7:c.291-50_316del		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	48	325	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023782	27023783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	24	332	0	ENST00000324856.7:c.888_889insG	p.Gln297AlafsTer103	p.Q297Afs*103	ENST00000324856	NM_006015.4	296	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7578453	7578460	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCGGA	GGCGCGGA	-			P-0047848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	46	727	0	ENST00000269305.4:c.470_477del	p.Val157AspfsTer21	p.V157Dfs*21	ENST00000269305	NM_001126112.2	157	gTCCGCGCC/g																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	71	604	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	54	565	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	34	286	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	31	331	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
ALK	238	MSKCC	GRCh37	2	29606696	29606696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	43	468	0	ENST00000389048.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000389048	NM_004304.4	395	cGt/cAt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675268	176675269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	32	236	0	ENST00000439151.2:c.4591dupA	p.Met1531AsnfsTer4	p.M1531Nfs*4	ENST00000439151	NM_022455.4	1528	-/A																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993708	72993708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62640010		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	48	535	0	ENST00000268489.5:c.337G>A	p.Ala113Thr	p.A113T	ENST00000268489	NM_006885.3	113	Gcc/Acc																																																																														
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	53	303	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56494996	56494996	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201958747		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	68	496	0	ENST00000267101.3:c.3353G>A	p.Arg1118Gln	p.R1118Q	ENST00000267101	NM_001982.3	1118	cGg/cAg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120535068	120535068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	47	376	2	ENST00000229340.5:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000229340	NM_006861.6	196	cGa/cAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	71	322	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	28	185	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	78	613	1	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	101	812	1	ENST00000575354.2:c.3347dupC	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	47	361	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710595	114710597	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs754968616		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	54	321	0	ENST00000543371.1:c.85_87del	p.Glu29del	p.E29del	ENST00000543371	NM_001198531.1	27	cAGGag/cag																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158647	26158647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	18	106	0	ENST00000289316.2:c.250T>C	p.Tyr84His	p.Y84H	ENST00000289316	NM_138720.2	84	Tac/Cac																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	55	458	0	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55233024	55233024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144943614		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	51	386	0	ENST00000275493.2:c.1774G>A	p.Val592Ile	p.V592I	ENST00000275493	NM_005228.3	592	Gtc/Atc																																																																														
RAD51	5888	MSKCC	GRCh37	15	41021807	41021807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	64	405	1	ENST00000267868.3:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000267868	NM_002875.4	250	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112164664	112164664	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	21	149	0	ENST00000257430.4:c.1742delA	p.Lys581ArgfsTer9	p.K581Rfs*9	ENST00000257430	NM_000038.5	580	Aaa/aa																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	77	373	3	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508470	106508470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	28	284	0	ENST00000359195.3:c.464C>T	p.Thr155Met	p.T155M	ENST00000359195	NM_002649.2	155	aCg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108137897	108137897	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	22	210	0	ENST00000278616.4:c.2467-1G>T		p.X823_splice	ENST00000278616	NM_000051.3	823																																																																															
EP300	2033	MSKCC	GRCh37	22	41513539	41513539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	62	505	0	ENST00000263253.7:c.443C>T	p.Thr148Met	p.T148M	ENST00000263253	NM_001429.3	148	aCg/aTg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110188	3110188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	78	590	0	ENST00000078429.4:c.178C>T	p.Arg60Cys	p.R60C	ENST00000078429	NM_002067.2	60	Cgc/Tgc																																																																														
PARP1	142	MSKCC	GRCh37	1	226567685	226567685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	54	480	1	ENST00000366794.5:c.1481C>T	p.Ala494Val	p.A494V	ENST00000366794	NM_001618.3	494	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	75	687	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
MSH6	2956	MSKCC	GRCh37	2	48025856	48025857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	17	211	0	ENST00000234420.5:c.741dupA	p.Arg248ThrfsTer8	p.R248Tfs*8	ENST00000234420	NM_000179.2	245	ata/atAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960039	134960039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	62	469	1	ENST00000398015.3:c.2396G>A	p.Arg799His	p.R799H	ENST00000398015	NM_004441.4	799	cGc/cAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864125	57864125	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	64	603	1	ENST00000228682.2:c.1607del	p.Pro536GlnfsTer77	p.P536Qfs*77	ENST00000228682	NM_005269.2	534	ggC/gg																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983016	149983016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	47	410	1	ENST00000253339.5:c.3242G>A	p.Arg1081Gln	p.R1081Q	ENST00000253339		1081	cGa/cAa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905944	50905944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	115	849	2	ENST00000440232.2:c.916C>T	p.Arg306Cys	p.R306C	ENST00000440232	NM_002691.3	306	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891205	151891205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	45	345	0	ENST00000262189.6:c.4549G>A	p.Gly1517Arg	p.G1517R	ENST00000262189	NM_170606.2	1517	Gga/Aga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89383342	89383342	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	66	509	3	ENST00000301030.4:c.86del	p.Lys29ArgfsTer8	p.K29Rfs*8	ENST00000301030	NM_001256183.1	29	aAg/ag																																																																														
MSI2	124540	MSKCC	GRCh37	17	55693419	55693419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	64	581	0	ENST00000284073.2:c.626C>T	p.Ala209Val	p.A209V	ENST00000284073	NM_138962.2	209	gCg/gTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	99	731	2	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912134	50912134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	98	652	2	ENST00000440232.2:c.1868G>A	p.Arg623Gln	p.R623Q	ENST00000440232	NM_002691.3	623	cGg/cAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65303634	65303634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	53	414	0	ENST00000342505.4:c.3121C>T	p.Arg1041Trp	p.R1041W	ENST00000342505	NM_002227.2	1041	Cgg/Tgg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134473	2134473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	89	805	1	ENST00000219476.3:c.4250G>A	p.Arg1417Gln	p.R1417Q	ENST00000219476	NM_000548.3	1417	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229048	36229048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	78	643	0	ENST00000222270.7:c.7828C>T	p.Arg2610Cys	p.R2610C	ENST00000222270	NM_014727.1	2610	Cgc/Tgc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62305359	62305359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200429535		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	71	645	1	ENST00000508582.2:c.904G>A	p.Val302Ile	p.V302I	ENST00000508582		302	Gtc/Atc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285675	46285675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	44	314	0	ENST00000334344.6:c.5035C>T	p.Arg1679Trp	p.R1679W	ENST00000334344	NM_152641.2	1679	Cgg/Tgg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56401613	56401613	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	44	300	0	ENST00000348428.3:c.1475C>T	p.Thr492Met	p.T492M	ENST00000348428	NM_006785.3	492	aCg/aTg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156695	2156695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142012621		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	85	630	1	ENST00000434045.2:c.227C>T	p.Ser76Leu	p.S76L	ENST00000434045	NM_001127598.1	76	tCg/tTg																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484366	50484366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	43	305	0	ENST00000394963.4:c.1126G>A	p.Val376Ile	p.V376I	ENST00000394963	NM_003076.4	376	Gtc/Atc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50492533	50492533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	79	561	1	ENST00000394963.4:c.1429C>T	p.Arg477Cys	p.R477C	ENST00000394963	NM_003076.4	477	Cgc/Tgc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56474152	56474152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	89	587	0	ENST00000267101.3:c.68G>A	p.Gly23Asp	p.G23D	ENST00000267101	NM_001982.3	23	gGc/gAc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877396	28877396	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	62	431	0	ENST00000282397.4:c.3925T>C	p.Tyr1309His	p.Y1309H	ENST00000282397	NM_002019.4	1309	Tac/Cac																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680674	88680674	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	65	589	0	ENST00000360948.2:c.583T>G	p.Ser195Ala	p.S195A	ENST00000360948	NM_001012338.2	195	Tcc/Gcc																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2097715	2097715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	78	611	2	ENST00000219066.1:c.134C>T	p.Ala45Val	p.A45V	ENST00000219066	NM_002528.5	45	gCa/gTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348110	89348110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	81	671	2	ENST00000301030.4:c.4840C>T	p.Arg1614Trp	p.R1614W	ENST00000301030	NM_001256183.1	1614	Cgg/Tgg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369469	40369469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	63	442	0	ENST00000293328.3:c.1183G>A	p.Glu395Lys	p.E395K	ENST00000293328	NM_012448.3	395	Gag/Aag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250371	10250371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	66	417	0	ENST00000340748.4:c.3881G>A	p.Cys1294Tyr	p.C1294Y	ENST00000340748		1294	tGc/tAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11169524	11169524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	85	578	0	ENST00000344626.4:c.4594C>A	p.Leu1532Met	p.L1532M	ENST00000344626	NM_003072.3	1532	Ctg/Atg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376433	15376433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	105	638	0	ENST00000263377.2:c.581C>T	p.Ser194Phe	p.S194F	ENST00000263377	NM_058243.2	194	tCc/tTc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256732	19256732	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	79	570	4	ENST00000162023.5:c.981del	p.Gly329AlafsTer?	p.G329Afs*?	ENST00000162023		327	ccC/cc																																																																														
AXL	558	MSKCC	GRCh37	19	41758299	41758299	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	51	569	0	ENST00000301178.4:c.1755A>C	p.Glu585Asp	p.E585D	ENST00000301178	NM_021913.4	585	gaA/gaC																																																																														
CIC	23152	MSKCC	GRCh37	19	42795812	42795812	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141269383		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	66	651	1	ENST00000575354.2:c.2801G>A	p.Arg934Gln	p.R934Q	ENST00000575354	NM_015125.3	934	cGg/cAg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128030524	128030524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	33	319	0	ENST00000285398.2:c.1744G>A	p.Gly582Arg	p.G582R	ENST00000285398	NM_000122.1	582	Gga/Aga																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375199	31375199	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	95	580	0	ENST00000328111.2:c.596G>C	p.Gly199Ala	p.G199A	ENST00000328111	NM_006892.3	199	gGc/gCc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936678	49936678	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	56	559	0	ENST00000296474.3:c.1249A>G	p.Ser417Gly	p.S417G	ENST00000296474	NM_002447.2	417	Agc/Ggc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332643	153332643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	29	339	0	ENST00000281708.4:c.313G>A	p.Ala105Thr	p.A105T	ENST00000281708	NM_033632.3	105	Gct/Act																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509768	106509768	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146487441		P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	53	451	0	ENST00000359195.3:c.1762G>A	p.Ala588Thr	p.A588T	ENST00000359195	NM_002649.2	588	Gca/Aca																																																																														
MED12	9968	MSKCC	GRCh37	X	70341511	70341511	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	51	555	1	ENST00000374080.3:c.946T>A	p.Ser316Thr	p.S316T	ENST00000374080		316	Tca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	33	352	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577060	7577060	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TCTTT			P-0047851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	47	597	0	ENST00000269305.4:c.878delinsAAAGA	p.Gly293GlufsTer14	p.G293Efs*14	ENST00000269305	NM_001126112.2	293	gGg/gAAAGAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	535	466	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21643226	21643226	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	74	401	0	ENST00000421138.2:c.301A>C	p.Asn101His	p.N101H	ENST00000421138		101	Aac/Cac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217244	66217244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	85	267	0	ENST00000273854.3:c.2371C>A	p.Leu791Ile	p.L791I	ENST00000273854	NM_004439.5	791	Ctt/Att																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	13	264	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169917	32169917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	45	475	0	ENST00000375023.3:c.3691C>A	p.Pro1231Thr	p.P1231T	ENST00000375023	NM_004557.3	1231	Cca/Aca																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133781	55133781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	12	256	0	ENST00000257290.5:c.994G>T	p.Val332Phe	p.V332F	ENST00000257290	NM_006206.4	332	Gtc/Ttc																																																																														
WT1	7490	MSKCC	GRCh37	11	32410657	32410657	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	26	374	0	ENST00000332351.3:c.1501C>G	p.Arg501Gly	p.R501G	ENST00000332351	NM_024426.4	501	Cgc/Ggc																																																																														
PGR	5241	MSKCC	GRCh37	11	100933282	100933282	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	22	344	0	ENST00000325455.5:c.2108A>T	p.His703Leu	p.H703L	ENST00000325455	NM_001202474.3	703	cAt/cTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375999	118375999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	21	308	0	ENST00000534358.1:c.9392G>A	p.Gly3131Asp	p.G3131D	ENST00000534358	NM_005933.3	3131	gGt/gAt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436596	110436596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	53	564	2	ENST00000375856.3:c.1805G>A	p.Arg602Gln	p.R602Q	ENST00000375856	NM_003749.2	602	cGg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094979	11094979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	45	542	0	ENST00000344626.4:c.152C>T	p.Ser51Leu	p.S51L	ENST00000344626	NM_003072.3	51	tCa/tTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55946256	55946256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	42	292	0	ENST00000263923.4:c.3923G>T	p.Gly1308Val	p.G1308V	ENST00000263923	NM_002253.2	1308	gGa/gTa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322947	31322947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	113	436	0	ENST00000412585.2:c.949G>C	p.Val317Leu	p.V317L	ENST00000412585	NM_005514.6	317	Gtc/Ctc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	136	331	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	274	547	0	ENST00000269305.4:c.401T>C	p.Phe134Ser	p.F134S	ENST00000269305	NM_001126112.2	134	tTt/tCt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012382	152012382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	46	212	0	ENST00000262189.6:c.431C>A	p.Ser144Tyr	p.S144Y	ENST00000262189	NM_170606.2	144	tCc/tAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	74	255	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	197	447	0	ENST00000269305.4:c.657delC	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372503	118372503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	64	366	0	ENST00000534358.1:c.6436C>T	p.Pro2146Ser	p.P2146S	ENST00000534358	NM_005933.3	2146	Ccc/Tcc																																																																														
MDM4	4194	MSKCC	GRCh37	1	204499918	204499918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	20	310	1	ENST00000367182.3:c.260G>A	p.Arg87His	p.R87H	ENST00000367182	NM_001278516.1	87	cGt/cAt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376694	31376694	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	55	324	0	ENST00000328111.2:c.689G>A	p.Trp230Ter	p.W230*	ENST00000328111	NM_006892.3	230	tGg/tAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1293590	1293590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1349	151	654	2	ENST00000310581.5:c.1411C>T	p.Arg471Trp	p.R471W	ENST00000310581	NM_198253.2	471	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112174516	112174516	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0047861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	36	248	0	ENST00000257430.4:c.3225T>G	p.Tyr1075Ter	p.Y1075*	ENST00000257430	NM_000038.5	1075	taT/taG																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	99	229	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	308	461	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434070	121434070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	119	386	2	ENST00000257555.6:c.961C>T	p.Arg321Cys	p.R321C	ENST00000257555		321	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485241	8485241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	77	215	0	ENST00000356435.5:c.3139G>A	p.Ala1047Thr	p.A1047T	ENST00000356435		1047	Gcc/Acc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	150	428	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	221	578	5	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741849	17741849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	59	138	0	ENST00000250003.3:c.520G>A	p.Ala174Thr	p.A174T	ENST00000250003	NM_002478.4	174	Gcc/Acc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148514998	148515000	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	105	233	2	ENST00000320356.2:c.1209_1211del	p.Glu404del	p.E404del	ENST00000320356	NM_004456.4	403	gaAGAg/gag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	27	222	2	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212568865	212568866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	71	275	0	ENST00000342788.4:c.1252dup	p.Ser418PhefsTer2	p.S418Ffs*2	ENST00000342788	NM_005235.2	418	tct/tTct																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	12	48	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	92	226	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729394	41729394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	117	386	0	ENST00000242208.4:c.1135C>T	p.Arg379Trp	p.R379W	ENST00000242208	NM_002192.2	379	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096967	11096967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	162	589	1	ENST00000344626.4:c.458C>T	p.Pro153Leu	p.P153L	ENST00000344626	NM_003072.3	153	cCg/cTg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31389095	31389095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	73	291	0	ENST00000328111.2:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000328111	NM_006892.3	670	Cgg/Tgg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719525	61719525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	85	250	0	ENST00000401558.2:c.1658G>A	p.Arg553His	p.R553H	ENST00000401558	NM_003400.3	553	cGt/cAt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467083	25467083	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	146	473	0	ENST00000264709.3:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000264709	NM_175629.2	598	Cga/Tga																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	136	280	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
TEK	7010	MSKCC	GRCh37	9	27192562	27192562	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138894008		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	138	308	0	ENST00000380036.4:c.1565G>A	p.Arg522His	p.R522H	ENST00000380036	NM_000459.3	522	cGt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214866	36214866	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	176	506	3	ENST00000222270.7:c.3296del	p.Gly1099AlafsTer83	p.G1099Afs*83	ENST00000222270	NM_014727.1	1098	Ggg/gg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944267	81944267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	183	529	0	ENST00000359376.3:c.1876G>A	p.Glu626Lys	p.E626K	ENST00000359376	NM_002661.3	626	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216184	36216184	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	130	475	1	ENST00000222270.7:c.3596del	p.Gly1199AlafsTer156	p.G1199Afs*156	ENST00000222270	NM_014727.1	1198	Ggg/gg																																																																														
BARD1	580	MSKCC	GRCh37	2	215632303	215632303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	113	311	0	ENST00000260947.4:c.1471G>T	p.Gly491Trp	p.G491W	ENST00000260947	NM_000465.2	491	Ggg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211861	36211861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	144	536	1	ENST00000222270.7:c.1612C>T	p.Arg538Cys	p.R538C	ENST00000222270	NM_014727.1	538	Cgt/Tgt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986838	36986838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	98	165	0	ENST00000354822.5:c.851C>T	p.Ser284Leu	p.S284L	ENST00000354822	NM_001079668.2	284	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108186821	108186821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	96	258	1	ENST00000278616.4:c.6179G>A	p.Arg2060His	p.R2060H	ENST00000278616	NM_000051.3	2060	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778371	3778371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	51	529	1	ENST00000262367.5:c.6677C>T	p.Ala2226Val	p.A2226V	ENST00000262367	NM_004380.2	2226	gCg/gTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528243	157528243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	129	333	0	ENST00000346085.5:c.5968C>T	p.Arg1990Ter	p.R1990*	ENST00000346085	NM_020732.3	1990	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031954	10031954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199528312		P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	108	427	0	ENST00000330684.3:c.869C>T	p.Ala290Val	p.A290V	ENST00000330684	NM_001134407.1	290	gCg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438210	49438211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	44	372	1	ENST00000301067.7:c.5058dup	p.Arg1687ThrfsTer4	p.R1687Tfs*4	ENST00000301067	NM_003482.3	1686	-/A																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274832	38274832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	82	254	0	ENST00000425967.3:c.1748C>T	p.Thr583Met	p.T583M	ENST00000425967	NM_001174067.1	583	aCg/aTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865040	57865040	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	141	467	0	ENST00000228682.2:c.2520del	p.Pro842HisfsTer104	p.P842Hfs*104	ENST00000228682	NM_005269.2	839	gaG/ga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462969	120462969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	120	280	0	ENST00000256646.2:c.5362C>T	p.Pro1788Ser	p.P1788S	ENST00000256646	NM_024408.3	1788	Cca/Tca																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649616	206649616	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	144	405	0	ENST00000367120.3:c.451A>G	p.Ser151Gly	p.S151G	ENST00000367120	NM_014002.3	151	Agc/Ggc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691185	18691185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	26	280	0	ENST00000266497.5:c.3296G>A	p.Cys1099Tyr	p.C1099Y	ENST00000266497		1099	tGc/tAc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112915661	112915661	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	36	264	0	ENST00000351677.2:c.934C>T	p.Pro312Ser	p.P312S	ENST00000351677	NM_002834.3	312	Cct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929217	32929217	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	98	268	0	ENST00000380152.3:c.7230del	p.Phe2410LeufsTer57	p.F2410Lfs*57	ENST00000380152		2409	ccT/cc																																																																														
B2M	567	MSKCC	GRCh37	15	45003788	45003788	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	215	385	0	ENST00000558401.1:c.46del	p.Ser16LeufsTer28	p.S16Lfs*28	ENST00000558401	NM_004048.2	15	cTt/ct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993780	72993780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	108	412	0	ENST00000268489.5:c.265G>A	p.Ala89Thr	p.A89T	ENST00000268489	NM_006885.3	89	Gcc/Acc																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752422	55752422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	223	604	1	ENST00000284073.2:c.880G>A	p.Gly294Arg	p.G294R	ENST00000284073	NM_138962.2	294	Gga/Aga																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39620659	39620659	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	70	220	0	ENST00000262039.4:c.2057A>G	p.Gln686Arg	p.Q686R	ENST00000262039	NM_002647.2	686	cAg/cGg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326503	62326503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	205	569	0	ENST00000508582.2:c.3500T>C	p.Met1167Thr	p.M1167T	ENST00000508582		1167	aTg/aCg																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22221649	22221649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	25	206	0	ENST00000215832.6:c.82C>A	p.Leu28Ile	p.L28I	ENST00000215832	NM_002745.4	28	Ctc/Atc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30648382	30648383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	107	342	0	ENST00000359013.4:c.12dup	p.Leu5AlafsTer37	p.L5Afs*37	ENST00000359013	NM_001024847.2	3	cgg/cGgg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205106	128205106	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	186	651	0	ENST00000341105.2:c.335A>G	p.His112Arg	p.H112R	ENST00000341105	NM_032638.4	112	cAc/cGc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185184690	185184690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	77	264	0	ENST00000265026.3:c.1582G>A	p.Ala528Thr	p.A528T	ENST00000265026	NM_004721.4	528	Gcc/Acc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806102	1806102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	177	507	0	ENST00000260795.2:c.1121C>T	p.Ala374Val	p.A374V	ENST00000260795		374	gCa/gTa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902409	1902410	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	131	375	0	ENST00000382891.5:c.31dup	p.Ser11PhefsTer46	p.S11Ffs*46	ENST00000382891	NM_133335.3	10	ctt/cTtt																																																																														
TET2	54790	MSKCC	GRCh37	4	106158443	106158443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	71	133	0	ENST00000380013.4:c.3344C>T	p.Pro1115Leu	p.P1115L	ENST00000380013	NM_001127208.2	1115	cCt/cTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724407	117724407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	136	377	0	ENST00000368508.3:c.472C>A	p.Leu158Met	p.L158M	ENST00000368508	NM_002944.2	158	Ctg/Atg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117862860	117862860	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	51	198	0	ENST00000297338.2:c.1617A>C	p.Glu539Asp	p.E539D	ENST00000297338	NM_006265.2	539	gaA/gaC																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044860	47044860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	165	583	0	ENST00000329236.7:c.1952T>C	p.Val651Ala	p.V651A	ENST00000329236	NM_001204466.1	651	gTg/gCg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	217	667	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65316513	65316513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	134	388	0	ENST00000342505.4:c.1729C>T	p.Arg577Trp	p.R577W	ENST00000342505	NM_002227.2	577	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	193	654	0	ENST00000269305.4:c.587G>C	p.Arg196Pro	p.R196P	ENST00000269305	NM_001126112.2	196	cGa/cCa																																																																														
EED	8726	MSKCC	GRCh37	11	85988089	85988089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	91	258	0	ENST00000263360.6:c.1034C>G	p.Pro345Arg	p.P345R	ENST00000263360	NM_003797.3	345	cCc/cGc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472628	88472628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	105	417	0	ENST00000360948.2:c.1927C>G	p.Gln643Glu	p.Q643E	ENST00000360948	NM_001012338.2	643	Cag/Gag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	124	274	0	ENST00000342988.3:c.1257del	p.Arg420ValfsTer16	p.R420Vfs*16	ENST00000342988	NM_005359.5	419	Ggg/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057897	27057899	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	TT			P-0047986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	198	703	0	ENST00000324856.7:c.1605_1607delinsTT	p.Gln537SerfsTer82	p.Q537Sfs*82	ENST00000324856	NM_006015.4	535	ccCTCc/ccTTc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			625	375	738	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456714	32456714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	187	649	0	ENST00000332351.3:c.178G>T	p.Gly60Trp	p.G60W	ENST00000332351	NM_024426.4	60	Ggg/Tgg																																																																														
WT1	7490	MSKCC	GRCh37	11	32414251	32414251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	128	380	3	ENST00000332351.3:c.1300C>T	p.Arg434Cys	p.R434C	ENST00000332351	NM_024426.4	434	Cgt/Tgt																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2491366	2491366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	135	935	0	ENST00000355716.4:c.409G>T	p.Ala137Ser	p.A137S	ENST00000355716	NM_003820.2	137	Gcg/Tcg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841455	156841455	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	254	527	0	ENST00000524377.1:c.758A>T	p.Asn253Ile	p.N253I	ENST00000524377	NM_002529.3	253	aAt/aTt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112079	115112079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	125	770	0	ENST00000257566.3:c.1661C>T	p.Ser554Leu	p.S554L	ENST00000257566	NM_016569.3	554	tCg/tTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609667	28609667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	71	479	0	ENST00000241453.7:c.1562G>T	p.Gly521Val	p.G521V	ENST00000241453	NM_004119.2	521	gGc/gTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670439	88670439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	99	325	0	ENST00000360948.2:c.1247C>A	p.Thr416Lys	p.T416K	ENST00000360948	NM_001012338.2	416	aCa/aAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862937	9862937	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	120	440	0	ENST00000330684.3:c.2366A>T	p.Glu789Val	p.E789V	ENST00000330684	NM_001134407.1	789	gAg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577552	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	236	536	1	ENST00000269305.4:c.729_730delinsTT	p.Met243_Gly244delinsIleCys	p.M243_G244delinsIC	ENST00000269305	NM_001126112.2	243	atGGgc/atTTgc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30321691	30321691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	136	450	0	ENST00000322652.5:c.1546C>T	p.Arg516Cys	p.R516C	ENST00000322652	NM_015355.2	516	Cgc/Tgc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17389765	17389765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			920	229	797	0	ENST00000359435.4:c.898G>A	p.Ala300Thr	p.A300T	ENST00000359435	NM_001033549.1	300	Gcc/Acc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530072	212530072	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	55	248	0	ENST00000342788.4:c.1847del	p.Pro616HisfsTer37	p.P616Hfs*37	ENST00000342788	NM_005235.2	616	cCa/ca																																																																														
PAK7	0	MSKCC	GRCh37	20	9523306	9523306	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	150	490	0	ENST00000353224.5:c.1931T>G	p.Phe644Cys	p.F644C	ENST00000353224	NM_177990.2	644	tTc/tGc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561168	9561168	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	105	392	0	ENST00000353224.5:c.614C>A	p.Ser205Ter	p.S205*	ENST00000353224	NM_177990.2	205	tCa/tAa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920300	1920300	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			885	84	574	0	ENST00000382891.5:c.1360G>T	p.Gly454Ter	p.G454*	ENST00000382891	NM_133335.3	454	Gga/Tga																																																																														
KIT	3815	MSKCC	GRCh37	4	55602920	55602931	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	CTAAGTTCTACA	CTAAGTTCTACA	-			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	40	283	0	ENST00000288135.5:c.2630_2641del	p.Ser877_Lys881delinsTer	p.S877_K881delins*	ENST00000288135	NM_000222.2	877	tCTAAGTTCTACAag/tag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38963042	38963042	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	34	289	0	ENST00000357387.3:c.1502del	p.Ala501GlufsTer29	p.A501Efs*29	ENST00000357387	NM_152756.3	501	gCa/ga																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032201	26032201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	46	402	0	ENST00000244661.2:c.88G>T	p.Ala30Ser	p.A30S	ENST00000244661	NM_003537.3	30	Gcg/Tcg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32820877	32820877	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			964	257	793	0	ENST00000354258.4:c.717C>G	p.Cys239Trp	p.C239W	ENST00000354258	NM_000593.5	239	tgC/tgG																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340348	8340348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	108	397	0	ENST00000356435.5:c.5248G>A	p.Gly1750Ser	p.G1750S	ENST00000356435		1750	Ggc/Agc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396455	139396455	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			720	166	689	1	ENST00000277541.6:c.5470C>T	p.Arg1824Trp	p.R1824W	ENST00000277541	NM_017617.3	1824	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	104	335	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0040159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	238	664	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	242	523	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	242	523	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	79	268	0	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	118	379	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0044129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	112	271	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602737	10602737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	438	800	0	ENST00000171111.5:c.841C>A	p.Leu281Met	p.L281M	ENST00000171111	NM_203500.1	281	Ctg/Atg																																																																														
TET2	54790	MSKCC	GRCh37	4	106156066	106156066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	136	284	0	ENST00000380013.4:c.967C>T	p.Gln323Ter	p.Q323*	ENST00000380013	NM_001127208.2	323	Caa/Taa																																																																														
STK11	6794	MSKCC	GRCh37	19	1207015	1207015	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	285	679	0	ENST00000326873.7:c.103del	p.Ile35SerfsTer16	p.I35Sfs*16	ENST00000326873	NM_000455.4	35	Atc/tc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590439	67590439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	76	135	0	ENST00000274335.5:c.1501C>T	p.Gln501Ter	p.Q501*	ENST00000274335		501	Caa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	124	355	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0048135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	225	662	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220428	123220428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	126	289	0	ENST00000218089.9:c.3085C>T	p.Gln1029Ter	p.Q1029*	ENST00000218089	NM_001042749.1	1029	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	203	498	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	50	277	0	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720741	89720741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	27	162	0	ENST00000371953.3:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000371953	NM_000314.4	298	Caa/Taa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129103	2129103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	216	619	0	ENST00000219476.3:c.3037G>A	p.Asp1013Asn	p.D1013N	ENST00000219476	NM_000548.3	1013	Gat/Aat																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554045	63554045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	216	549	0	ENST00000307078.5:c.694G>C	p.Glu232Gln	p.E232Q	ENST00000307078	NM_004655.3	232	Gag/Cag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817843	3817843	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	142	454	0	ENST00000262367.5:c.3128C>G	p.Ser1043Ter	p.S1043*	ENST00000262367	NM_004380.2	1043	tCa/tGa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262834	46262834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	236	400	0	ENST00000371998.3:c.1007C>T	p.Ser336Leu	p.S336L	ENST00000371998		336	tCg/tTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949085	44949085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	130	214	1	ENST00000377967.4:c.3646G>T	p.Asp1216Tyr	p.D1216Y	ENST00000377967	NM_021140.2	1216	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0048136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	37	570	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	49	346	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726712	88726712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	25	430	0	ENST00000360948.2:c.332A>G	p.Lys111Arg	p.K111R	ENST00000360948	NM_001012338.2	111	aAg/aGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	103	381	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	160	620	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
RB1	5925	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	45	188	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	121	645	1	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523505	106523505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	88	233	0	ENST00000359195.3:c.2657C>T	p.Thr886Met	p.T886M	ENST00000359195	NM_002649.2	886	aCg/aTg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652198	36652199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	209	689	0	ENST00000244741.5:c.322dup	p.Glu108GlyfsTer21	p.E108Gfs*21	ENST00000244741	NM_000389.4	107	gag/gaGg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918141	50918141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	40	755	0	ENST00000440232.2:c.2458G>A	p.Ala820Thr	p.A820T	ENST00000440232	NM_002691.3	820	Gcc/Acc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	181	507	0	ENST00000267101.3:c.1166C>T	p.Thr389Ile	p.T389I	ENST00000267101	NM_001982.3	389	aCa/aTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27102083	27102083	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	169	479	1	ENST00000324856.7:c.5009G>A	p.Trp1670Ter	p.W1670*	ENST00000324856	NM_006015.4	1670	tGg/tAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244202	46244202	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	100	345	0	ENST00000334344.6:c.2296C>G	p.Pro766Ala	p.P766A	ENST00000334344	NM_152641.2	766	Cca/Gca																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562739	21562739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	210	589	1	ENST00000382592.4:c.1180G>A	p.Val394Met	p.V394M	ENST00000382592	NM_014572.2	394	Gtg/Atg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749094	43749094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	107	530	0	ENST00000382044.4:c.1712G>T	p.Ser571Ile	p.S571I	ENST00000382044	NM_001141980.1	571	aGt/aTt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78704489	78704489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	235	355	0	ENST00000306801.3:c.637C>T	p.Arg213Trp	p.R213W	ENST00000306801	NM_020761.2	213	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1293875	1293875	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	48	858	0	ENST00000310581.5:c.1126C>G	p.Pro376Ala	p.P376A	ENST00000310581	NM_198253.2	376	Ccc/Gcc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818267	32818267	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	214	520	0	ENST00000354258.4:c.1258C>G	p.Leu420Val	p.L420V	ENST00000354258	NM_000593.5	420	Ctg/Gtg																																																																														
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913514		P-0048138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	204	371	0	ENST00000288135.5:c.2466T>A	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaA																																																																														
MGA	23269	MSKCC	GRCh37	15	42028385	42028466	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGGAAGTCTTCCTGCAATGAAGGAGAATCCTCTTCTACTTCTTATATGCATCAGAGGTCACCTGGTGGTCCCACCAAACT	GCTGGAAGTCTTCCTGCAATGAAGGAGAATCCTCTTCTACTTCTTATATGCATCAGAGGTCACCTGGTGGTCCCACCAAACT	-			P-0048138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	120	223	0	ENST00000219905.7:c.3924_4005del	p.Ser1308ArgfsTer18	p.S1308Rfs*18	ENST00000219905	NM_001164273.1	1308	aGCTGGAAGTCTTCCTGCAATGAAGGAGAATCCTCTTCTACTTCTTATATGCATCAGAGGTCACCTGGTGGTCCCACCAAACTg/ag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86637138	86637138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0048138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	99	240	0	ENST00000274376.6:c.1049T>C	p.Ile350Thr	p.I350T	ENST00000274376	NM_002890.2	350	aTa/aCa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593602	55593612	+	protein_altering_variant	In_Frame_Del	DEL	GTGGAAGGTTG	GTGGAAGGTTG	CT			P-0048138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	173	380	0	ENST00000288135.5:c.1668_1678delinsCT	p.Gln556_Val560delinsHisPhe	p.Q556_V560delinsHF	ENST00000288135	NM_000222.2	556	caGTGGAAGGTTGtt/caCTtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	61	359	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0048141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	64	304	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	48	222	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119772	17119772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	162	706	0	ENST00000285071.4:c.1222C>T	p.Gln408Ter	p.Q408*	ENST00000285071	NM_144997.5	408	Cag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281611	15281611	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	87	642	6	ENST00000263388.2:c.4762A>C	p.Asn1588His	p.N1588H	ENST00000263388	NM_000435.2	1588	Aac/Cac																																																																														
PAK7	0	MSKCC	GRCh37	20	9538374	9538374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	51	317	0	ENST00000353224.5:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000353224	NM_177990.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	467	592	0	ENST00000269305.4:c.645T>A	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agA																																																																														
CDC42	998	MSKCC	GRCh37	1	22412980	22413009	+	inframe_deletion	In_Frame_Del	DEL	ATGTATTTCTAGTCTGTTTTTCAGTGGTCT	ATGTATTTCTAGTCTGTTTTTCAGTGGTCT	-			P-0048171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	242	131	0	ENST00000344548.3:c.227_256del	p.Asp76_Ser86delinsAla	p.D76_S86delinsA	ENST00000344548	NM_001039802.1	76	gATGTATTTCTAGTCTGTTTTTCAGTGGTCTct/gct																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245339	41245339	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	303	482	0	ENST00000357654.3:c.2209del	p.Thr737GlnfsTer16	p.T737Qfs*16	ENST00000357654	NM_007294.3	737	Aca/ca																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750414	39750414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	172	375	0	ENST00000361337.2:c.2029G>C	p.Asp677His	p.D677H	ENST00000361337	NM_003286.2	677	Gat/Cat																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851673	134851673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	209	546	1	ENST00000398015.3:c.1079G>T	p.Cys360Phe	p.C360F	ENST00000398015	NM_004441.4	360	tGc/tTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1805423	1805423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	428	615	1	ENST00000260795.2:c.935C>T	p.Ala312Val	p.A312V	ENST00000260795		312	gCg/gTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32945147	32945147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	96	285	0	ENST00000380152.3:c.8542G>T	p.Glu2848Ter	p.E2848*	ENST00000380152		2848	Gaa/Taa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061192	38061230	+	inframe_deletion	In_Frame_Del	DEL	AAGCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAAC	AAGCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAAC	-			P-0048172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	180	487	0	ENST00000250448.2:c.759_797del	p.Met253_Phe266delinsIle	p.M253_F266delinsI	ENST00000250448	NM_004496.3	253	atGTTCGAGAACGGCTGCTACTTGCGCCGCCAGAAGCGCTTc/atc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58677794	58677794	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	250	667	0	ENST00000305921.3:c.19C>G	p.Leu7Val	p.L7V	ENST00000305921	NM_003620.3	7	Ctg/Gtg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724541	162724541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	193	496	4	ENST00000367921.3:c.313C>T	p.Arg105Cys	p.R105C	ENST00000367921	NM_006182.2	105	Cgc/Tgc																																																																														
NF1	4763	MSKCC	GRCh37	17	29533316	29533316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	109	246	0	ENST00000358273.4:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000358273	NM_001042492.2	440	cGa/cAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	207	593	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	92	426	1	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048626	180048626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	149	760	0	ENST00000261937.6:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000261937	NM_182925.4	646	Gag/Aag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711359	114711359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	117	228	0	ENST00000543371.1:c.374C>A	p.Ala125Asp	p.A125D	ENST00000543371	NM_001198531.1	125	gCc/gAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436156	56436157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	240	561	0	ENST00000407977.2:c.980dup	p.Pro328ThrfsTer115	p.P328Tfs*115	ENST00000407977		327	gga/ggGa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877396	40877396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	327	511	0	ENST00000373198.4:c.2300C>A	p.Ala767Asp	p.A767D	ENST00000373198	NM_133170.3	767	gCt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	28	337	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	85	729	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55970830	55970830	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	32	433	0	ENST00000263923.4:c.1967T>C	p.Val656Ala	p.V656A	ENST00000263923	NM_002253.2	656	gTc/gCc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17125914	17125914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	94	640	1	ENST00000285071.4:c.680C>T	p.Thr227Met	p.T227M	ENST00000285071	NM_144997.5	227	aCg/aTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974713	21974719	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCAGC	GGGCAGC	-			P-0048175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	34	434	0	ENST00000304494.5:c.108_114del	p.Leu37ThrfsTer14	p.L37Tfs*14	ENST00000304494	NM_000077.4	36	gcGCTGCCC/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974713	21974719	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCAGC	GGGCAGC	-			P-0048175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	34	434	0	ENST00000304494.5:c.108_114del	p.Leu37ThrfsTer14	p.L37Tfs*14	ENST00000304494	NM_000077.4	36	gcGCTGCCC/gc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255248	16255248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	90	361	0	ENST00000375759.3:c.2513C>T	p.Thr838Met	p.T838M	ENST00000375759	NM_015001.2	838	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106074	27106074	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	245	503	0	ENST00000324856.7:c.5688del	p.Pro1898HisfsTer25	p.P1898Hfs*25	ENST00000324856	NM_006015.4	1895	gaG/ga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136244	64136244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	392	747	0	ENST00000334205.4:c.1403A>G	p.Asn468Ser	p.N468S	ENST00000334205	NM_003942.2	468	aAt/aGt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94219177	94219177	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	37	416	0	ENST00000323929.3:c.227T>C	p.Leu76Pro	p.L76P	ENST00000323929	NM_005591.3	76	cTc/cCc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94911916	94911917	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	114	414	0	ENST00000536441.1:c.1013_1014del	p.Phe338CysfsTer32	p.F338Cfs*32	ENST00000536441	NM_144665.3	338	tTT/t																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118370559	118370560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	135	298	0	ENST00000534358.1:c.6091dup	p.Ile2031AsnfsTer9	p.I2031Nfs*9	ENST00000534358	NM_005933.3	2030	aca/acAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231351	46231351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	104	300	0	ENST00000334344.6:c.1191G>T	p.Gln397His	p.Q397H	ENST00000334344	NM_152641.2	397	caG/caT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445149	49445149	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	358	695	2	ENST00000301067.7:c.2317delC	p.Gln773SerfsTer157	p.Q773Sfs*157	ENST00000301067	NM_003482.3	773	Cag/ag																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012452	29012452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	135	431	0	ENST00000282397.4:c.419G>A	p.Ser140Asn	p.S140N	ENST00000282397	NM_002019.4	140	aGt/aAt																																																																														
RB1	5925	MSKCC	GRCh37	13	49037897	49037898	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	68	243	0	ENST00000267163.4:c.2138_2139del	p.Lys713SerfsTer7	p.K713Sfs*7	ENST00000267163	NM_000321.2	713	AAa/a																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	317	581	0	ENST00000250448.2:c.781C>T	p.Arg261Cys	p.R261C	ENST00000250448	NM_004496.3	261	Cgc/Tgc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	256	508	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	41989044	41989044	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	196	442	1	ENST00000219905.7:c.1840del	p.Arg614GlufsTer7	p.R614Efs*7	ENST00000219905	NM_001164273.1	612	ggA/gg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641009	3641009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	421	756	0	ENST00000294008.3:c.2630C>T	p.Ala877Val	p.A877V	ENST00000294008	NM_032444.2	877	gCt/gTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3827631	3827631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141098117		P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	20	383	0	ENST00000262367.5:c.2141G>A	p.Arg714His	p.R714H	ENST00000262367	NM_004380.2	714	cGc/cAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347060	89347060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	331	688	1	ENST00000301030.4:c.5890G>A	p.Gly1964Arg	p.G1964R	ENST00000301030	NM_001256183.1	1964	Ggg/Agg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696405	47696405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	218	431	0	ENST00000347630.2:c.418G>T	p.Asp140Tyr	p.D140Y	ENST00000347630	NM_001007230.1	140	Gat/Tat																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	703	766	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435788	56435788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	279	571	0	ENST00000407977.2:c.1349A>G	p.Tyr450Cys	p.Y450C	ENST00000407977		450	tAt/tGt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220070	36220070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	710	672	0	ENST00000222270.7:c.4790G>A	p.Arg1597Gln	p.R1597Q	ENST00000222270	NM_014727.1	1597	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	437	910	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
CIC	23152	MSKCC	GRCh37	19	42792068	42792068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	312	699	0	ENST00000575354.2:c.872G>T	p.Gly291Val	p.G291V	ENST00000575354	NM_015125.3	291	gGg/gTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	340	799	4	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967157	25967158	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	171	435	0	ENST00000435504.4:c.2046_2048dup	p.Ala684dup	p.A684dup	ENST00000435504		684	gcc/gcAGCc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607775	46607775	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	408	765	2	ENST00000263734.3:c.1964G>T	p.Gly655Val	p.G655V	ENST00000263734	NM_001430.4	655	gGg/gTg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715842	61715842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	129	374	0	ENST00000401558.2:c.2087T>C	p.Val696Ala	p.V696A	ENST00000401558	NM_003400.3	696	gTg/gCg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	138	348	12	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22162034	22162035	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	199	372	0	ENST00000215832.6:c.220dup	p.Ile74AsnfsTer8	p.I74Nfs*8	ENST00000215832	NM_002745.4	74	atc/aAtc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967309	134967309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186851943		P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	229	505	0	ENST00000398015.3:c.2648G>A	p.Arg883Gln	p.R883Q	ENST00000398015	NM_004441.4	883	cGg/cAg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1976696	1976696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	363	665	0	ENST00000382891.5:c.3479G>A	p.Arg1160His	p.R1160H	ENST00000382891	NM_133335.3	1160	cGt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55598153	55598153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	189	400	0	ENST00000288135.5:c.2350G>A	p.Ala784Thr	p.A784T	ENST00000288135	NM_000222.2	784	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295405	1295405	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	74	176	1				ENST00000310581	NM_198253.2																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31508780	31508780	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	286	535	0	ENST00000344624.3:c.1535delA	p.Lys512ArgfsTer19	p.K512Rfs*19	ENST00000344624		512	aAg/ag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628394	86628394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	72	283	0	ENST00000274376.6:c.763T>C	p.Tyr255His	p.Y255H	ENST00000274376	NM_002890.2	255	Tat/Cat																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	397	780	1	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
CCND3	896	MSKCC	GRCh37	6	41903731	41903731	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	435	783	0	ENST00000372991.4:c.826C>T	p.Gln276Ter	p.Q276*	ENST00000372991	NM_001760.3	276	Caa/Taa																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	372	806	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151833995	151834000	+	inframe_deletion	In_Frame_Del	DEL	ATAGTC	ATAGTC	-			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	201	398	0	ENST00000262189.6:c.14653_14658del	p.Asp4885_Tyr4886del	p.D4885_Y4886del	ENST00000262189	NM_170606.2	4885	GACTAT/-																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981872	70981872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	69	750	2	ENST00000276594.2:c.224C>A	p.Pro75His	p.P75H	ENST00000276594	NM_024504.3	75	cCt/cAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518052	8518052	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	195	432	0	ENST00000356435.5:c.1339C>T	p.Gln447Ter	p.Q447*	ENST00000356435		447	Cag/Tag																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020768	37020769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	207	476	0	ENST00000358127.4:c.76dupG	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gtt/gGtt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482251	87482251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	265	551	0	ENST00000277120.3:c.1538G>A	p.Gly513Asp	p.G513D	ENST00000277120		513	gGc/gAc																																																																														
ABL1	25	MSKCC	GRCh37	9	133747514	133747516	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGG	AGG	-			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	199	372	0	ENST00000318560.5:c.825_827del		p.X275_splice	ENST00000318560	NM_005157.4	275																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	274	639	4	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0048177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	106	255	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057976	27057976	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	38	562	0	ENST00000324856.7:c.1684C>T	p.Gln562Ter	p.Q562*	ENST00000324856	NM_006015.4	562	Cag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	114	324	0	ENST00000349496.5:c.97T>G	p.Ser33Ala	p.S33A	ENST00000349496	NM_001904.3	33	Tct/Gct																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370862	55370862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	72	642	1	ENST00000297316.4:c.164C>T	p.Pro55Leu	p.P55L	ENST00000297316	NM_022454.3	55	cCg/cTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68772290	68772291	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0048177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	82	718	0	ENST00000261769.5:c.144_145del	p.Gly49ProfsTer9	p.G49Pfs*9	ENST00000261769	NM_004360.3	47	GAg/g																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591092	67591100	+	inframe_deletion	In_Frame_Del	DEL	GTATGAACA	GTATGAACA	-			P-0048178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	27	172	0	ENST00000274335.5:c.1686_1694del	p.Met563_Ser565del	p.M563_S565del	ENST00000274335		562	cGTATGAACAgc/cgc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082261	16082261	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1204	80	702	0	ENST00000281043.3:c.75G>C	p.Gln25His	p.Q25H	ENST00000281043	NM_005378.4	25	caG/caC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	22	562	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0034502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			640	119	418	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	121	785	1	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692792	89692792	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034502-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	66	357	0	ENST00000371953.3:c.277del	p.His93IlefsTer6	p.H93Ifs*6	ENST00000371953	NM_000314.4	92	gaC/ga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	104	361	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	193	775	1	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144147	11144147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	199	781	1	ENST00000344626.4:c.3728G>T	p.Arg1243Leu	p.R1243L	ENST00000344626	NM_003072.3	1243	cGg/cTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123182871	123182871	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	26	262	0	ENST00000218089.9:c.836A>G	p.Asp279Gly	p.D279G	ENST00000218089	NM_001042749.1	279	gAt/gGt																																																																														
MED12	9968	MSKCC	GRCh37	X	70349942	70349942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	80	828	0	ENST00000374080.3:c.3925G>A	p.Asp1309Asn	p.D1309N	ENST00000374080		1309	Gac/Aac																																																																														
CBL	867	MSKCC	GRCh37	11	119169188	119169188	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	91	506	0	ENST00000264033.4:c.2372C>G	p.Ser791Ter	p.S791*	ENST00000264033	NM_005188.3	791	tCa/tGa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30047510	30047510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	38	411	0	ENST00000331968.5:c.2491G>T	p.Asp831Tyr	p.D831Y	ENST00000331968	NM_002742.2	831	Gat/Tat																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48586263	48586263	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	40	458	0	ENST00000342988.3:c.932A>T	p.Gln311Leu	p.Q311L	ENST00000342988	NM_005359.5	311	cAg/cTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867348	45867348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	137	953	0	ENST00000391945.4:c.845G>T	p.Arg282Leu	p.R282L	ENST00000391945	NM_000400.3	282	cGg/cTg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61711216	61711217	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	46	445	0	ENST00000401558.2:c.2532_2533del	p.His844GlnfsTer28	p.H844Qfs*28	ENST00000401558	NM_003400.3	844	caTAga/caga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530068	212530068	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	46	324	0	ENST00000342788.4:c.1851C>A	p.Cys617Ter	p.C617*	ENST00000342788	NM_005235.2	617	tgC/tgA																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371740	55371740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			638	85	637	0	ENST00000297316.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000297316	NM_022454.3	144	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0047836-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	65	615	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578484	7578485	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047836-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	83	1113	1	ENST00000269305.4:c.445dup	p.Ser149PhefsTer32	p.S149Ffs*32	ENST00000269305	NM_001126112.2	149	tcc/tTcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692910	89692910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047836-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	36	599	0	ENST00000371953.3:c.394G>A	p.Gly132Ser	p.G132S	ENST00000371953	NM_000314.4	132	Ggt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	15	378	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	140	884	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0047945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	39	453	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399309	139399309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	79	1092	1	ENST00000277541.6:c.4834G>A	p.Gly1612Ser	p.G1612S	ENST00000277541	NM_017617.3	1612	Ggc/Agc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741606	17741606	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	27	458	0	ENST00000250003.3:c.277del	p.Cys93AlafsTer30	p.C93Afs*30	ENST00000250003	NM_002478.4	93	Tgc/gc																																																																														
MGA	23269	MSKCC	GRCh37	15	42042725	42042725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	171	378	0	ENST00000219905.7:c.6920A>G	p.Asp2307Gly	p.D2307G	ENST00000219905	NM_001164273.1	2307	gAt/gGt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99440035	99440035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	179	472	0	ENST00000268035.6:c.1003G>A	p.Glu335Lys	p.E335K	ENST00000268035	NM_000875.3	335	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578528	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0047947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	420	1125	0	ENST00000269305.4:c.402_404del	p.Cys135del	p.C135del	ENST00000269305	NM_001126112.2	134	ttTTGc/ttc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349213	15349213	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	57	418	0	ENST00000263377.2:c.4064C>G	p.Ser1355Ter	p.S1355*	ENST00000263377	NM_058243.2	1355	tCa/tGa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276409	115276409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	113	468	0	ENST00000438362.2:c.919G>A	p.Glu307Lys	p.E307K	ENST00000438362	NM_001242891.1	307	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	324	411	0	ENST00000256078.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	13	Ggc/Cgc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865149	57865149	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1299	947	994	0	ENST00000228682.2:c.2626G>T	p.Glu876Ter	p.E876*	ENST00000228682	NM_005269.2	876	Gaa/Taa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28599048	28599048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	131	497	0	ENST00000241453.7:c.2240C>A	p.Pro747Gln	p.P747Q	ENST00000241453	NM_004119.2	747	cCg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	229	777	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	96	266	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ATR	545	MSKCC	GRCh37	3	142215872	142215872	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	78	316	0	ENST00000350721.4:c.5721A>T	p.Leu1907Phe	p.L1907F	ENST00000350721	NM_001184.3	1907	ttA/ttT																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564465	86564466	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	213	765	0	ENST00000274376.6:c.200dup	p.Leu67PhefsTer45	p.L67Ffs*45	ENST00000274376	NM_002890.2	66	gct/gcTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340386	8340386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	135	566	0	ENST00000356435.5:c.5210C>A	p.Ser1737Tyr	p.S1737Y	ENST00000356435		1737	tCc/tAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931969	39931969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	235	940	1	ENST00000378444.4:c.2630C>A	p.Thr877Asn	p.T877N	ENST00000378444	NM_001123385.1	877	aCc/aAc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332839	152332840	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0047953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	275	494	0	ENST00000206249.3:c.1145_1146delinsT	p.Ala382ValfsTer3	p.A382Vfs*3	ENST00000206249	NM_000125.3	382	gCC/gT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	80	592	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	86	366	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	137	1076	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
CDH1	999	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	113	574	3	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139831	55139831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	56	511	0	ENST00000257290.5:c.1492G>A	p.Ala498Thr	p.A498T	ENST00000257290	NM_006206.4	498	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	136	845	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057874	27057874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	192	822	0	ENST00000324856.7:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000324856	NM_006015.4	528	Cag/Tag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17122397	17122397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	79	825	1	ENST00000285071.4:c.998C>T	p.Ser333Leu	p.S333L	ENST00000285071	NM_144997.5	333	tCa/tTa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88649908	88649908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	60	405	0	ENST00000372037.3:c.157G>C	p.Glu53Gln	p.E53Q	ENST00000372037	NM_004329.2	53	Gag/Cag																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197387	26197387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	65	503	0	ENST00000356476.2:c.92C>T	p.Pro31Leu	p.P31L	ENST00000356476		31	cCa/cTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47142964	47142964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	37	423	0	ENST00000409792.3:c.4999C>G	p.Gln1667Glu	p.Q1667E	ENST00000409792	NM_014159.6	1667	Cag/Gag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115252235	115252235	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	53	381	0	ENST00000369535.4:c.405G>C	p.Lys135Asn	p.K135N	ENST00000369535	NM_002524.4	135	aaG/aaC																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115275290	115275290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	75	517	0	ENST00000438362.2:c.1123G>C	p.Glu375Gln	p.E375Q	ENST00000438362	NM_001242891.1	375	Gag/Cag																																																																														
CDC73	79577	MSKCC	GRCh37	1	193117041	193117043	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	58	363	0	ENST00000367435.3:c.774_776del	p.Arg259del	p.R259del	ENST00000367435	NM_024529.4	258	gcCAGa/gca																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845617	63845621	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAG	GAAAG	CAAA			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	28	181	1	ENST00000279873.7:c.1356_1360delinsCAAA	p.Lys452AsnfsTer27	p.K452Nfs*27	ENST00000279873	NM_032199.2	452	aaGAAAGaa/aaCAAAaa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156604	2156604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	37	725	0	ENST00000434045.2:c.318C>G	p.Phe106Leu	p.F106L	ENST00000434045	NM_001127598.1	106	ttC/ttG																																																																														
ATM	472	MSKCC	GRCh37	11	108180895	108180895	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	37	185	0	ENST00000278616.4:c.5771C>G	p.Ser1924Ter	p.S1924*	ENST00000278616	NM_000051.3	1924	tCa/tGa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118368738	118368738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	46	388	0	ENST00000534358.1:c.5752G>A	p.Asp1918Asn	p.D1918N	ENST00000534358	NM_005933.3	1918	Gac/Aac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911258	32911258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	75	463	0	ENST00000380152.3:c.2766C>G	p.Phe922Leu	p.F922L	ENST00000380152		922	ttC/ttG																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911391	32911391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	42	350	0	ENST00000380152.3:c.2899C>G	p.Leu967Val	p.L967V	ENST00000380152		967	Cta/Gta																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911487	32911487	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	55	368	0	ENST00000380152.3:c.2995C>G	p.Pro999Ala	p.P999A	ENST00000380152		999	Cca/Gca																																																																														
RB1	5925	MSKCC	GRCh37	13	48953748	48953748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	58	198	0	ENST00000267163.4:c.1351delC	p.Arg451AlafsTer6	p.R451Afs*6	ENST00000267163	NM_000321.2	451	Cgc/gc																																																																														
MGA	23269	MSKCC	GRCh37	15	42000389	42000389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	38	323	0	ENST00000219905.7:c.2408C>T	p.Ser803Phe	p.S803F	ENST00000219905	NM_001164273.1	803	tCt/tTt																																																																														
B2M	567	MSKCC	GRCh37	15	45007777	45007777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	63	365	0	ENST00000558401.1:c.224C>T	p.Ser75Phe	p.S75F	ENST00000558401	NM_004048.2	75	tCt/tTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965127	81965127	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	54	548	0	ENST00000359376.3:c.2607G>C	p.Gln869His	p.Q869H	ENST00000359376	NM_002661.3	869	caG/caC																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965149	81965149	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	69	620	0	ENST00000359376.3:c.2629G>C	p.Glu877Gln	p.E877Q	ENST00000359376	NM_002661.3	877	Gag/Cag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25973143	25973143	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	30	354	1	ENST00000435504.4:c.1282C>T	p.Gln428Ter	p.Q428*	ENST00000435504		428	Cag/Tag																																																																														
PMS1	5378	MSKCC	GRCh37	2	190718969	190718969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	21	185	0	ENST00000441310.2:c.971C>T	p.Ser324Phe	p.S324F	ENST00000441310	NM_000534.4	324	tCt/tTt																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735501	204735501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	76	549	0	ENST00000302823.3:c.302C>T	p.Ser101Phe	p.S101F	ENST00000302823	NM_005214.4	101	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530104	212530104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	52	319	0	ENST00000342788.4:c.1815C>G	p.Phe605Leu	p.F605L	ENST00000342788	NM_005235.2	605	ttC/ttG																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637554	52637554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	41	321	0	ENST00000394830.3:c.2762G>A	p.Arg921Gln	p.R921Q	ENST00000394830	NM_018313.4	921	cGa/cAa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79965940	79965940	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	94	382	0	ENST00000265081.6:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000265081	NM_002439.4	202	Cag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169908	32169908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	108	878	0	ENST00000375023.3:c.3700G>A	p.Asp1234Asn	p.D1234N	ENST00000375023	NM_004557.3	1234	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	639	822	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	734	1216	1	ENST00000326873.7:c.667G>A	p.Glu223Lys	p.E223K	ENST00000326873	NM_000455.4	223	Gag/Aag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602443	10602443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	768	1081	0	ENST00000171111.5:c.1135G>A	p.Gly379Ser	p.G379S	ENST00000171111	NM_203500.1	379	Ggc/Agc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239498	123239498	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	324	704	0	ENST00000358487.5:c.2339C>G	p.Ser780Ter	p.S780*	ENST00000358487	NM_000141.4	780	tCa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	106	386	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857475	9857475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	49	390	0	ENST00000330684.3:c.3926G>A	p.Arg1309Gln	p.R1309Q	ENST00000330684	NM_001134407.1	1309	cGg/cAg																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675064	40675064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	91	682	3	ENST00000249776.8:c.28G>T	p.Asp10Tyr	p.D10Y	ENST00000249776	NM_033286.3	10	Gac/Tac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600046	10600046	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0047957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	174	676	0	ENST00000171111.5:c.1532-2A>G		p.X511_splice	ENST00000171111	NM_203500.1	511																																																																															
PMS1	5378	MSKCC	GRCh37	2	190708759	190708759	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	74	312	0	ENST00000441310.2:c.652G>C	p.Val218Leu	p.V218L	ENST00000441310	NM_000534.4	218	Gtt/Ctt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628099	187628099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	119	491	0	ENST00000441802.2:c.2883G>T	p.Gln961His	p.Q961H	ENST00000441802	NM_005245.3	961	caG/caT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120480611	120480611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146014987		P-0047958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	52	386	1	ENST00000256646.2:c.3206G>A	p.Arg1069Gln	p.R1069Q	ENST00000256646	NM_024408.3	1069	cGg/cAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462864	120462864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	28	312	0	ENST00000256646.2:c.5467G>A	p.Val1823Ile	p.V1823I	ENST00000256646	NM_024408.3	1823	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577529	7577534	+	inframe_deletion	In_Frame_Del	DEL	ATGGGC	ATGGGC	-			P-0047958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	140	726	0	ENST00000269305.4:c.747_752del	p.Arg249_Ile251delinsSer	p.R249_I251delinsS	ENST00000269305	NM_001126112.2	249	agGCCCATc/agc																																																																														
ATR	545	MSKCC	GRCh37	3	142285085	142285085	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	28	281	0	ENST00000350721.4:c.170A>G	p.Lys57Arg	p.K57R	ENST00000350721	NM_001184.3	57	aAg/aGg																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250443	26250443	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	35	587	0	ENST00000446824.2:c.391A>T	p.Ile131Phe	p.I131F	ENST00000446824	NM_021018.2	131	Att/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	82	655	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582873	95582873	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	36	251	0	ENST00000343455.3:c.1669A>T	p.Ile557Phe	p.I557F	ENST00000343455	NM_177438.2	557	Atc/Ttc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68982069	68982069	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	132	458	0	ENST00000288368.4:c.1444-1G>T		p.X482_splice	ENST00000288368	NM_024870.2	482																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	83	518	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
SYK	6850	MSKCC	GRCh37	9	93636522	93636522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	95	501	0	ENST00000375746.1:c.952G>A	p.Val318Met	p.V318M	ENST00000375746	NM_001174167.1	318	Gtg/Atg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	100	290	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	36	387	0				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9857197	9857197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	73	481	0	ENST00000330684.3:c.4204C>T	p.Arg1402Trp	p.R1402W	ENST00000330684	NM_001134407.1	1402	Cgg/Tgg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863443	57863443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	50	662	2	ENST00000228682.2:c.1538G>A	p.Gly513Glu	p.G513E	ENST00000228682	NM_005269.2	513	gGg/gAg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383682	42383682	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	60	696	0	ENST00000221972.3:c.457C>G	p.Leu153Val	p.L153V	ENST00000221972	NM_021601.3	153	Ctg/Gtg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281785	46281785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	82	589	0	ENST00000371998.3:c.4232C>T	p.Pro1411Leu	p.P1411L	ENST00000371998		1411	cCc/cTc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760411	133760411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	73	773	0	ENST00000318560.5:c.2734G>A	p.Gly912Arg	p.G912R	ENST00000318560	NM_005157.4	912	Gga/Aga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743924	40743924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199514226		P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	49	593	0	ENST00000373198.4:c.3071C>T	p.Thr1024Met	p.T1024M	ENST00000373198	NM_133170.3	1024	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112175756	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	104	306	0	ENST00000257430.4:c.4466del	p.Leu1489TyrfsTer18	p.L1489Yfs*18	ENST00000257430	NM_000038.5	1489	Tta/ta																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262745	16262745	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	41	439	0	ENST00000375759.3:c.10010C>G	p.Thr3337Ser	p.T3337S	ENST00000375759	NM_015001.2	3337	aCc/aGc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482426	56482426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	164	662	0	ENST00000267101.3:c.974G>C	p.Gly325Ala	p.G325A	ENST00000267101	NM_001982.3	325	gGa/gCa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112915709	112915709	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	59	452	0	ENST00000351677.2:c.982A>C	p.Ile328Leu	p.I328L	ENST00000351677	NM_002834.3	328	Att/Ctt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562068	21562068	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	138	1319	0	ENST00000382592.4:c.1851C>G	p.Tyr617Ter	p.Y617*	ENST00000382592	NM_014572.2	617	taC/taG																																																																														
CCNE1	898	MSKCC	GRCh37	19	30303600	30303600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	48	486	0	ENST00000262643.3:c.28G>A	p.Ala10Thr	p.A10T	ENST00000262643	NM_001238.2	10	Gcg/Acg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201847	152201847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	26	399	0	ENST00000206249.3:c.701G>T	p.Arg234Met	p.R234M	ENST00000206249	NM_000125.3	234	aGg/aTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939074	76939074	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	65	231	0	ENST00000373344.5:c.1674T>G	p.Ser558Arg	p.S558R	ENST00000373344	NM_000489.3	558	agT/agG																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	509	408	0	ENST00000288135.5:c.1676T>G	p.Val559Gly	p.V559G	ENST00000288135	NM_000222.2	559	gTt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	35	512	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0048031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	25	634	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	21	499	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55958804	55958804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	76	345	0	ENST00000263923.4:c.3049G>A	p.Glu1017Lys	p.E1017K	ENST00000263923	NM_002253.2	1017	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	47	277	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	106	840	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	64	454	0	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	64	454	0	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199897	138199897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	20	455	0	ENST00000237289.4:c.1315C>T	p.Arg439Trp	p.R439W	ENST00000237289	NM_001270507.1	439	Cgg/Tgg																																																																														
MET	4233	MSKCC	GRCh37	7	116436137	116436137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	44	288	0	ENST00000397752.3:c.4132G>A	p.Glu1378Lys	p.E1378K	ENST00000397752	NM_000245.2	1378	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874827	151874827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	76	256	0	ENST00000262189.6:c.7711C>T	p.Arg2571Trp	p.R2571W	ENST00000262189	NM_170606.2	2571	Cgg/Tgg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127933380	127933380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	38	373	0	ENST00000373547.4:c.155G>A	p.Gly52Glu	p.G52E	ENST00000373547	NM_002721.4	52	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	43	200	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	162	287	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	111	575	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033252	69033252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	62	331	0	ENST00000288368.4:c.3692C>A	p.Thr1231Asn	p.T1231N	ENST00000288368	NM_024870.2	1231	aCt/aAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912181	114912181	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	82	387	0	ENST00000543371.1:c.1251G>C	p.Trp417Cys	p.W417C	ENST00000543371	NM_001198531.1	417	tgG/tgC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578206	7578207	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	117	518	1	ENST00000269305.4:c.642dup	p.Ser215Ter	p.S215*	ENST00000269305	NM_001126112.2	214	-/T																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370266	40370266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	88	633	0	ENST00000293328.3:c.1072G>A	p.Gly358Arg	p.G358R	ENST00000293328	NM_012448.3	358	Ggg/Agg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509780	187509780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	21	209	0	ENST00000441802.2:c.13733C>T	p.Pro4578Leu	p.P4578L	ENST00000441802	NM_005245.3	4578	cCg/cTg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101910006	101910006	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	41	138	0	ENST00000374994.4:c.1329del	p.Val444LeufsTer7	p.V444Lfs*7	ENST00000374994	NM_004612.2	442	agA/ag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716327	52716327	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	105	621	0	ENST00000322088.6:c.771G>C	p.Trp257Cys	p.W257C	ENST00000322088	NM_014225.5	257	tgG/tgC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	221	941	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	21	152	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101453	27101453	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	112	559	0	ENST00000324856.7:c.4735C>T	p.Gln1579Ter	p.Q1579*	ENST00000324856	NM_006015.4	1579	Cag/Tag																																																																														
CCND1	595	MSKCC	GRCh37	11	69466000	69466000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	174	799	2	ENST00000227507.2:c.838G>A	p.Glu280Lys	p.E280K	ENST00000227507	NM_053056.2	280	Gag/Aag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26029111	26029111	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	21	228	0	ENST00000435504.4:c.239T>C	p.Val80Ala	p.V80A	ENST00000435504		80	gTa/gCa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626032	12626032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	73	340	0	ENST00000251849.4:c.1928C>G	p.Pro643Arg	p.P643R	ENST00000251849	NM_002880.3	643	cCg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	45	873	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0048037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	54	622	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038335	180038335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	43	681	1	ENST00000261937.6:c.3682G>A	p.Ala1228Thr	p.A1228T	ENST00000261937	NM_182925.4	1228	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	261	780	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
BARD1	580	MSKCC	GRCh37	2	215632308	215632308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	135	430	0	ENST00000260947.4:c.1466C>A	p.Thr489Asn	p.T489N	ENST00000260947	NM_000465.2	489	aCc/aAc																																																																														
APC	324	MSKCC	GRCh37	5	112174086	112174086	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	83	215	0	ENST00000257430.4:c.2795del	p.Ser932Ter	p.S932*	ENST00000257430	NM_000038.5	932	tCa/ta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	55	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	42	752	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918596	44918597	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0048039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	41	416	0	ENST00000377967.4:c.1083_1084del	p.Tyr362Ter	p.Y362*	ENST00000377967	NM_021140.2	360	aCT/a																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933904	39933904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	30	867	0	ENST00000378444.4:c.695C>T	p.Pro232Leu	p.P232L	ENST00000378444	NM_001123385.1	232	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974701	+	inframe_deletion	In_Frame_Del	DEL	TAACTA	TAACTA	-			P-0048039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	61	503	0	ENST00000304494.5:c.126_131del	p.Ser43_Tyr44del	p.S43_Y44del	ENST00000304494	NM_000077.4	42	aaTAGTTAc/aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974701	+	inframe_deletion	In_Frame_Del	DEL	TAACTA	TAACTA	-			P-0048039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	61	503	0	ENST00000304494.5:c.126_131del	p.Ser43_Tyr44del	p.S43_Y44del	ENST00000304494	NM_000077.4	42	aaTAGTTAc/aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	85	798	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	44	252	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	64	646	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244392	5244392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	160	837	6	ENST00000357368.4:c.1090G>A	p.Val364Ile	p.V364I	ENST00000357368	NM_002850.3	364	Gtc/Atc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0048041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	33	230	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0048041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	22	222	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
RHEB	6009	MSKCC	GRCh37	7	151188049	151188049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	29	146	0	ENST00000262187.5:c.104A>G	p.Tyr35Cys	p.Y35C	ENST00000262187	NM_005614.3	35	tAc/tGc																																																																														
RARA	5914	MSKCC	GRCh37	17	38510639	38510639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	52	651	0	ENST00000254066.5:c.893A>G	p.His298Arg	p.H298R	ENST00000254066	NM_000964.3	298	cAc/cGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604761	48604766	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTAC	ACTTAC	TT			P-0048041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	28	236	1	ENST00000342988.3:c.1583_1588delinsTT	p.His528LeufsTer8	p.H528Lfs*8	ENST00000342988	NM_005359.5	528	cACTTACac/cTTac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	154	778	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	76	424	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481671	56481671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	187	809	0	ENST00000267101.3:c.706T>C	p.Ser236Pro	p.S236P	ENST00000267101	NM_001982.3	236	Tca/Cca																																																																														
TERT	7015	MSKCC	GRCh37	5	1293605	1293605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1389	260	1302	1	ENST00000310581.5:c.1396C>T	p.Arg466Trp	p.R466W	ENST00000310581	NM_198253.2	466	Cgg/Tgg																																																																														
TET2	54790	MSKCC	GRCh37	4	106158148	106158148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	69	317	0	ENST00000380013.4:c.3049G>A	p.Asp1017Asn	p.D1017N	ENST00000380013	NM_001127208.2	1017	Gat/Aat																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729668	162729668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	105	615	1	ENST00000367921.3:c.754C>T	p.Pro252Ser	p.P252S	ENST00000367921	NM_006182.2	252	Ccc/Tcc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105522	11105522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	113	510	0	ENST00000344626.4:c.1438C>T	p.Leu480Phe	p.L480F	ENST00000344626	NM_003072.3	480	Ctc/Ttc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211048	36211048	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1398	226	1164	1	ENST00000222270.7:c.799A>T	p.Lys267Ter	p.K267*	ENST00000222270	NM_014727.1	267	Aaa/Taa																																																																														
KIT	3815	MSKCC	GRCh37	4	55599331	55599331	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	83	403	1	ENST00000288135.5:c.2457T>A	p.Asn819Lys	p.N819K	ENST00000288135	NM_000222.2	819	aaT/aaA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	135	209	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0048074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	257	657	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416552	49416552	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	190	648	0	ENST00000301067.7:c.16159C>T	p.Gln5387Ter	p.Q5387*	ENST00000301067	NM_003482.3	5387	Cag/Tag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017833	31017833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	290	907	0	ENST00000375687.4:c.695G>A	p.Arg232Lys	p.R232K	ENST00000375687	NM_015338.5	232	aGa/aAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41560083	41560106	+	inframe_deletion	In_Frame_Del	DEL	GAAAGATGCATCAGATCTGTGTCC	GAAAGATGCATCAGATCTGTGTCC	-			P-0048074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	94	300	0	ENST00000263253.7:c.3755_3778del	p.Arg1252_Leu1260delinsIle	p.R1252_L1260delinsI	ENST00000263253	NM_001429.3	1252	aGAAAGATGCATCAGATCTGTGTCCtt/att																																																																														
EP300	2033	MSKCC	GRCh37	22	41569771	41569771	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	85	176	0	ENST00000263253.7:c.4762A>G	p.Met1588Val	p.M1588V	ENST00000263253	NM_001429.3	1588	Atg/Gtg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057078	180057078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	43	984	1	ENST00000261937.6:c.541C>A	p.Gln181Lys	p.Q181K	ENST00000261937	NM_182925.4	181	Cag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878607	151878607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	234	568	1	ENST00000262189.6:c.6338C>A	p.Ser2113Ter	p.S2113*	ENST00000262189	NM_170606.2	2113	tCa/tAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179116	123179579	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTATCATATATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGGTCGGTATTTAGAAATATTTTCTGCATATTGTCTTAGATTTGAGATGAAAAAGATTCTCATTTAAAGAGAAAGGAAATAACAGAGATACAAATTAATTTTATTTATAAAGTGACCACTAAGAGGACACTCCCCCATCCCTCCTGCGAATTCCTGGAAATGGGATGATAATTTCAGTTTTGATTTTGTGAAGGTATACTATAACTAGTATTTGGTAATTTTCTTGTATACTATGCATACTGTGCCACAGCAGGGGAGAATTGGACAATAGGTATGTGTTGGGTTCTTGAAAAATACTATGCCACAGCAAGGGAAAATTGGACTATAGGTATGCATTGGATTATTGAAAAATACCATGCCACA	AGTATCATATATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGGTCGGTATTTAGAAATATTTTCTGCATATTGTCTTAGATTTGAGATGAAAAAGATTCTCATTTAAAGAGAAAGGAAATAACAGAGATACAAATTAATTTTATTTATAAAGTGACCACTAAGAGGACACTCCCCCATCCCTCCTGCGAATTCCTGGAAATGGGATGATAATTTCAGTTTTGATTTTGTGAAGGTATACTATAACTAGTATTTGGTAATTTTCTTGTATACTATGCATACTGTGCCACAGCAGGGGAGAATTGGACAATAGGTATGTGTTGGGTTCTTGAAAAATACTATGCCACAGCAAGGGAAAATTGGACTATAGGTATGCATTGGATTATTGAAAAATACCATGCCACA	-			P-0048074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	195	285	0	ENST00000218089.9:c.567_667+363del		p.X189_splice	ENST00000218089	NM_001042749.1	189																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	49	303	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	207	916	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	60	300	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	48	276	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	176	820	0	ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	149	377	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325792	65325792	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	102	440	0	ENST00000342505.4:c.1330A>G	p.Ile444Val	p.I444V	ENST00000342505	NM_002227.2	444	Atc/Gtc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212459	5212459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182037655		P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	206	1001	0	ENST00000357368.4:c.4658C>T	p.Thr1553Met	p.T1553M	ENST00000357368	NM_002850.3	1553	aCg/aTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435756	110435756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	70	187	0	ENST00000375856.3:c.2645G>A	p.Gly882Asp	p.G882D	ENST00000375856	NM_003749.2	882	gGc/gAc																																																																														
CD276	80381	MSKCC	GRCh37	15	74000691	74000691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	220	868	0	ENST00000318443.5:c.1381A>G	p.Thr461Ala	p.T461A	ENST00000318443	NM_001024736.1	461	Aca/Gca																																																																														
REL	5966	MSKCC	GRCh37	2	61145537	61145537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	58	329	0	ENST00000295025.8:c.649G>A	p.Glu217Lys	p.E217K	ENST00000295025	NM_002908.2	217	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	52	408	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	60	393	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249457	153249457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	40	441	1	ENST00000281708.4:c.1321C>T	p.Arg441Trp	p.R441W	ENST00000281708	NM_033632.3	441	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022914	27022945	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG	CCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG	-			P-0048077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	17	27	0	ENST00000324856.7:c.31_62del	p.Ser11LeufsTer89	p.S11Lfs*89	ENST00000324856	NM_006015.4	7	cCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG/c																																																																														
ERF	2077	MSKCC	GRCh37	19	42753512	42753512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	116	1024	1	ENST00000222329.4:c.752C>T	p.Ser251Leu	p.S251L	ENST00000222329	NM_006494.2	251	tCg/tTg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073678	8073679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	155	350	0	ENST00000377482.5:c.980dup	p.Ser328GlufsTer2	p.S328Efs*2	ENST00000377482	NM_018948.3	327	ccg/ccCg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098814	178098822	+	inframe_deletion	In_Frame_Del	DEL	ATCTAGTTG	ATCTAGTTG	-			P-0048077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	78	533	0	ENST00000397062.3:c.223_231del	p.Gln75_Asp77del	p.Q75_D77del	ENST00000397062	NM_006164.4	75	CAACTAGAT/-																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591135	67591140	+	inframe_deletion	In_Frame_Del	DEL	GAGAGA	GAGAGA	-			P-0048077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	25	215	0	ENST00000274335.5:c.1728_1733del	p.Arg577_Asp578del	p.R577_D578del	ENST00000274335		576	acGAGAGAc/acc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994128	21994163	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTTTCCTACCTGGTCTTCTAGGAAGCGGCTGCTGC	CCTTTCCTACCTGGTCTTCTAGGAAGCGGCTGCTGC	-			P-0048077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	85	549	0	ENST00000361570.3:c.291_316+10del		p.X97_splice	ENST00000361570	NM_058195.3	97																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994128	21994163	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTTTCCTACCTGGTCTTCTAGGAAGCGGCTGCTGC	CCTTTCCTACCTGGTCTTCTAGGAAGCGGCTGCTGC	-			P-0048077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	85	549	0	ENST00000361570.3:c.291_316+10del		p.X97_splice	ENST00000361570	NM_058195.3	97																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385170	41385171	+	missense_variant	Missense_Mutation	DNP	TT	TT	GG			P-0048078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	19	858	0	ENST00000373198.4:c.790_791delinsCC	p.Lys264Pro	p.K264P	ENST00000373198	NM_133170.3	264	AAg/CCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991835	72991835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	105	631	1	ENST00000268489.5:c.2210C>T	p.Thr737Ile	p.T737I	ENST00000268489	NM_006885.3	737	aCc/aTc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45651322	45651322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	87	554	1	ENST00000407780.3:c.703G>T	p.Asp235Tyr	p.D235Y	ENST00000407780	NM_001283052.1	235	Gac/Tac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023212	27023228	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGGGCCCTAGGCCCG	CGCGGGCCCTAGGCCCG	-			P-0048079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	12	274	0	ENST00000324856.7:c.319_335del	p.Ala107ProfsTer4	p.A107Pfs*4	ENST00000324856	NM_006015.4	106	aaCGCGGGCCCTAGGCCCGcc/aacc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	40	571	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
CDH1	999	MSKCC	GRCh37	16	68771330	68771330	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	24	467	0	ENST00000261769.5:c.12G>A	p.Trp4Ter	p.W4*	ENST00000261769	NM_004360.3	4	tgG/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	19	396	0				ENST00000310581	NM_198253.2																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43766907	43766907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	14	181	0	ENST00000382044.4:c.1144G>T	p.Val382Phe	p.V382F	ENST00000382044	NM_001141980.1	382	Gtt/Ttt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828666	72828666	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	29	574	0	ENST00000268489.5:c.7915C>G	p.Gln2639Glu	p.Q2639E	ENST00000268489	NM_006885.3	2639	Cag/Gag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652093	36652100	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTGCCC	GCCTGCCC	-			P-0048079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	44	908	0	ENST00000244741.5:c.215_222del	p.Gly72GlufsTer14	p.G72Efs*14	ENST00000244741	NM_000389.4	72	gGCCTGCCC/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	44	398	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	264	475	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588626	28588626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	63	323	0	ENST00000241453.7:c.2822C>T	p.Ser941Leu	p.S941L	ENST00000241453	NM_004119.2	941	tCg/tTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918761	32918761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	43	152	0	ENST00000380152.3:c.6908C>T	p.Ser2303Phe	p.S2303F	ENST00000380152		2303	tCc/tTc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374369	31374369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	97	713	1	ENST00000328111.2:c.368C>T	p.Ser123Phe	p.S123F	ENST00000328111	NM_006892.3	123	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210688	36210688	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	115	578	0	ENST00000222270.7:c.439C>T	p.Arg147Ter	p.R147*	ENST00000222270	NM_014727.1	147	Cga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024515	31024515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	103	544	0	ENST00000375687.4:c.4000C>T	p.Pro1334Ser	p.P1334S	ENST00000375687	NM_015338.5	1334	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518073	8518073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	133	407	0	ENST00000356435.5:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000356435		440	Gaa/Aaa																																																																														
TEK	7010	MSKCC	GRCh37	9	27213554	27213554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	54	429	0	ENST00000380036.4:c.2950G>A	p.Gly984Arg	p.G984R	ENST00000380036	NM_000459.3	984	Gga/Aga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468219	120468219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	106	696	0	ENST00000256646.2:c.4220C>T	p.Ser1407Leu	p.S1407L	ENST00000256646	NM_024408.3	1407	tCg/tTg																																																																														
CDK6	1021	MSKCC	GRCh37	7	92244500	92244500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	88	313	0	ENST00000265734.4:c.935C>T	p.Ser312Phe	p.S312F	ENST00000265734	NM_001259.6	312	tCc/tTc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400795	72400795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	67	234	0	ENST00000357731.5:c.376C>T	p.Pro126Ser	p.P126S	ENST00000357731	NM_173808.2	126	Ccc/Tcc																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112760193	112760193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	62	307	0	ENST00000369452.4:c.862C>T	p.Arg288Cys	p.R288C	ENST00000369452	NM_007373.3	288	Cgt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243478	46243478	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	82	324	0	ENST00000334344.6:c.1831T>A	p.Tyr611Asn	p.Y611N	ENST00000334344	NM_152641.2	611	Tac/Aac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246479	46246479	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	52	180	0	ENST00000334344.6:c.4573G>T	p.Glu1525Ter	p.E1525*	ENST00000334344	NM_152641.2	1525	Gaa/Taa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285642	46285642	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	101	313	0	ENST00000334344.6:c.5002del	p.Leu1668PhefsTer33	p.L1668Ffs*33	ENST00000334344	NM_152641.2	1668	Ctt/tt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608258	28608258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	60	417	0	ENST00000241453.7:c.1798G>A	p.Asp600Asn	p.D600N	ENST00000241453	NM_004119.2	600	Gat/Aat																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40384066	40384066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	179	385	0	ENST00000293328.3:c.80C>T	p.Pro27Leu	p.P27L	ENST00000293328	NM_012448.3	27	cCc/cTc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753603	42753603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	132	955	0	ENST00000222329.4:c.661C>T	p.Pro221Ser	p.P221S	ENST00000222329	NM_006494.2	221	Ccg/Tcg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25990541	25990541	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	74	438	0	ENST00000435504.4:c.686A>T	p.Asn229Ile	p.N229I	ENST00000435504		229	aAc/aTc																																																																														
ALK	238	MSKCC	GRCh37	2	29498009	29498009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	87	503	0	ENST00000389048.3:c.1997C>T	p.Pro666Leu	p.P666L	ENST00000389048	NM_004304.4	666	cCc/cTc																																																																														
ALK	238	MSKCC	GRCh37	2	29519881	29519881	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	79	538	0	ENST00000389048.3:c.1690G>C	p.Val564Leu	p.V564L	ENST00000389048	NM_004304.4	564	Gtg/Ctg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57470672	57470672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	48	265	0	ENST00000371085.3:c.145G>A	p.Gly49Arg	p.G49R	ENST00000371085	NM_000516.4	49	Gga/Aga																																																																														
KDR	3791	MSKCC	GRCh37	4	55955557	55955557	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	65	371	0	ENST00000263923.4:c.3388T>A	p.Tyr1130Asn	p.Y1130N	ENST00000263923	NM_002253.2	1130	Tat/Aat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106519963	106519963	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	46	119	0	ENST00000359195.3:c.2392-1G>A		p.X798_splice	ENST00000359195	NM_002649.2	798																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554345	141554346	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0048080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	90	964	0	ENST00000220592.5:c.1805_1806delinsTT	p.Pro602Leu	p.P602L	ENST00000220592	NM_012154.3	602	cCC/cTT																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	38	249	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	30	740	6	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																														
TET1	80312	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	51	457	0	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	19	382	0	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467828	50467828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	45	543	0	ENST00000331340.3:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000331340	NM_006060.4	355	Gcg/Acg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	40	817	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168741	56168741	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775802110		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	22	273	0	ENST00000399503.3:c.1595G>A	p.Arg532Gln	p.R532Q	ENST00000399503	NM_005921.1	532	cGa/cAa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	43	272	1	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	63	399	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858185	27858185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	44	486	0	ENST00000359303.2:c.386G>A	p.Arg129His	p.R129H	ENST00000359303	NM_003535.2	129	cGt/cAt																																																																														
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	35	506	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245586	41245587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	83	513	5	ENST00000357654.3:c.1961dup	p.Tyr655ValfsTer18	p.Y655Vfs*18	ENST00000357654	NM_007294.3	654	aag/aaAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274196	10274196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	64	493	0	ENST00000330684.3:c.73G>A	p.Ala25Thr	p.A25T	ENST00000330684	NM_001134407.1	25	Gcg/Acg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271699	15271699	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	45	1035	1	ENST00000263388.2:c.6740del	p.Pro2247HisfsTer82	p.P2247Hfs*82	ENST00000263388	NM_000435.2	2247	cCa/ca																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070324	37070324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	50	321	0	ENST00000231790.2:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000231790	NM_000249.3	487	Cga/Tga																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	112	397	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128420047	128420047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	70	531	0	ENST00000265960.3:c.381del	p.Lys127AsnfsTer20	p.K127Nfs*20	ENST00000265960	NM_001006617.1	127	aaA/aa																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182001	38182001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	62	539	0	ENST00000396334.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000396334	NM_002468.4	209	Cgc/Tgc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	32	496	2	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825539	50825539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	44	317	0	ENST00000398568.2:c.2170G>A	p.Val724Ile	p.V724I	ENST00000398568	NM_001042412.1	724	Gtt/Att																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026915	6026915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	18	123	1	ENST00000265849.7:c.1481C>T	p.Ser494Leu	p.S494L	ENST00000265849	NM_000535.5	494	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874013	151874013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	22	377	0	ENST00000262189.6:c.8525delA	p.Asn2842MetfsTer21	p.N2842Mfs*21	ENST00000262189	NM_170606.2	2842	aAt/at																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326695	62326695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140411308		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	116	901	0	ENST00000508582.2:c.3586G>A	p.Glu1196Lys	p.E1196K	ENST00000508582		1196	Gag/Aag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230692	46230692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	12	322	0	ENST00000334344.6:c.941G>A	p.Arg314His	p.R314H	ENST00000334344	NM_152641.2	314	cGt/cAt																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813325	102813325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	40	553	0	ENST00000307046.8:c.364C>T	p.Arg122Cys	p.R122C	ENST00000307046	NM_001111285.1	122	Cgt/Tgt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741892	145741892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	53	804	1	ENST00000428558.2:c.611C>G	p.Ala204Gly	p.A204G	ENST00000428558	NM_004260.3	204	gCc/gGc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129646	2129646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	44	975	4	ENST00000219476.3:c.3373C>T	p.Arg1125Trp	p.R1125W	ENST00000219476	NM_000548.3	1125	Cgg/Tgg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37081682	37081682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	27	304	0	ENST00000231790.2:c.1564C>T	p.Arg522Trp	p.R522W	ENST00000231790	NM_000249.3	522	Cgg/Tgg																																																																														
CASP8	841	MSKCC	GRCh37	2	202141587	202141587	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	20	323	0	ENST00000358485.4:c.878delG	p.Gly293AspfsTer4	p.G293Dfs*4	ENST00000358485	NM_001080125.1	292	cGg/cg																																																																														
TET2	54790	MSKCC	GRCh37	4	106196381	106196381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	31	319	0	ENST00000380013.4:c.4714C>T	p.Arg1572Trp	p.R1572W	ENST00000380013	NM_001127208.2	1572	Cgg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651313	52651313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	27	345	0	ENST00000394830.3:c.1783C>T	p.Arg595Trp	p.R595W	ENST00000394830	NM_018313.4	595	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097672	11097672	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	66	831	2	ENST00000344626.4:c.852G>A	p.Trp284Ter	p.W284*	ENST00000344626	NM_003072.3	284	tgG/tgA																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255077	16255077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	27	338	0	ENST00000375759.3:c.2342G>A	p.Arg781His	p.R781H	ENST00000375759	NM_015001.2	781	cGt/cAt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120509040	120509040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	48	444	0	ENST00000256646.2:c.1526G>T	p.Cys509Phe	p.C509F	ENST00000256646	NM_024408.3	509	tGt/tTt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845875	156845875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	46	855	0	ENST00000524377.1:c.1505T>C	p.Val502Ala	p.V502A	ENST00000524377	NM_002529.3	502	gTt/gCt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012327	176012327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	21	272	0	ENST00000367669.3:c.1607C>T	p.Ala536Val	p.A536V	ENST00000367669	NM_022457.5	536	gCa/gTa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	394705	394706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	30	438	0	ENST00000399788.2:c.4989dup	p.Pro1664AlafsTer3	p.P1664Afs*3	ENST00000399788	NM_001042603.1	1663	-/G																																																																														
KDM5A	5927	MSKCC	GRCh37	12	427420	427421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	80	559	0	ENST00000399788.2:c.2748dup	p.Val917SerfsTer28	p.V917Sfs*28	ENST00000399788	NM_001042603.1	916	-/A																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436550	49436550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200741577		P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	40	655	1	ENST00000301067.7:c.5756C>T	p.Thr1919Met	p.T1919M	ENST00000301067	NM_003482.3	1919	aCg/aTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860047	57860047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	84	738	1	ENST00000228682.2:c.787G>A	p.Gly263Arg	p.G263R	ENST00000228682	NM_005269.2	263	Ggg/Agg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416720	121416722	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	97	916	0	ENST00000257555.6:c.156_158del	p.Gly53del	p.G53del	ENST00000257555		50	tGCGgc/tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133250288	133250288	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	28	514	0	ENST00000320574.5:c.1232T>C	p.Val411Ala	p.V411A	ENST00000320574	NM_006231.2	411	gTg/gCg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959365	26959365	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	35	276	1	ENST00000381527.3:c.532C>T	p.Arg178Ter	p.R178*	ENST00000381527	NM_001260.1	178	Cga/Tga																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346034	73346034	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	20	177	0	ENST00000377767.4:c.1504G>A	p.Val502Ile	p.V502I	ENST00000377767	NM_014953.3	502	Gtt/Att																																																																														
MGA	23269	MSKCC	GRCh37	15	42040859	42040859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	37	422	0	ENST00000219905.7:c.5237C>G	p.Ala1746Gly	p.A1746G	ENST00000219905	NM_001164273.1	1746	gCt/gGt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250814	99250814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	40	432	0	ENST00000268035.6:c.118C>T	p.Arg40Cys	p.R40C	ENST00000268035	NM_000875.3	40	Cgc/Tgc																																																																														
CBFB	865	MSKCC	GRCh37	16	67070659	67070659	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	10	133	0	ENST00000412916.2:c.282+1G>A		p.X94_splice	ENST00000412916		94																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351463	89351464	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	53	650	0	ENST00000301030.4:c.1486_1487del	p.Leu496GlyfsTer82	p.L496Gfs*82	ENST00000301030	NM_001256183.1	496	CTg/g																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351898	89351898	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	48	834	0	ENST00000301030.4:c.1052A>C	p.Glu351Ala	p.E351A	ENST00000301030	NM_001256183.1	351	gAg/gCg																																																																														
BCL2	596	MSKCC	GRCh37	18	60985347	60985347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	40	646	0	ENST00000333681.4:c.553C>A	p.Leu185Met	p.L185M	ENST00000333681		185	Ctg/Atg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4102386	4102386	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	53	781	0	ENST00000262948.5:c.516A>C	p.Lys172Asn	p.K172N	ENST00000262948	NM_030662.3	172	aaA/aaC																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170813	11170813	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	61	714	0	ENST00000344626.4:c.4861C>T	p.Arg1621Ter	p.R1621*	ENST00000344626	NM_003072.3	1621	Cga/Tga																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130401	29130401	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	36	411	0	ENST00000328354.6:c.309del	p.Phe103LeufsTer7	p.F103Lfs*7	ENST00000328354	NM_007194.3	103	ttT/tt																																																																														
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	51	769	0	ENST00000263253.7:c.6969_6970dup	p.His2324ProfsTer30	p.H2324Pfs*30	ENST00000263253	NM_001429.3	2321	-/CC																																																																														
MLH1	4292	MSKCC	GRCh37	3	37059000	37059000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	35	259	0	ENST00000231790.2:c.794G>C	p.Arg265Pro	p.R265P	ENST00000231790	NM_000249.3	265	cGt/cCt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935983	49935983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	37	781	1	ENST00000296474.3:c.1687C>T	p.Gln563Ter	p.Q563*	ENST00000296474	NM_002447.2	563	Caa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89456496	89456497	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	31	311	0	ENST00000336596.2:c.1674dup	p.Val559CysfsTer13	p.V559Cfs*13	ENST00000336596	NM_005233.5	558	gtt/gTtt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538268	187538269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	35	438	0	ENST00000441802.2:c.8965dup	p.Arg2989LysfsTer12	p.R2989Kfs*12	ENST00000441802	NM_005245.3	2989	agg/aAgg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31521285	31521285	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	60	403	0	ENST00000344624.3:c.892C>T	p.Arg298Ter	p.R298*	ENST00000344624		298	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175181	112175182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	18	182	0	ENST00000257430.4:c.3892dup	p.Ser1298PhefsTer3	p.S1298Ffs*3	ENST00000257430	NM_000038.5	1297	gat/gaTt																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249630	110249630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	71	995	2	ENST00000374672.4:c.1045C>A	p.Pro349Thr	p.P349T	ENST00000374672	NM_004235.4	349	Cca/Aca																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399458	139399458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	110	987	2	ENST00000277541.6:c.4685C>A	p.Ala1562Glu	p.A1562E	ENST00000277541	NM_017617.3	1562	gCg/gAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041418	47041418	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	23	330	0	ENST00000329236.7:c.1528C>A	p.Leu510Ile	p.L510I	ENST00000329236	NM_001204466.1	510	Ctc/Atc																																																																														
AR	367	MSKCC	GRCh37	X	66765913	66765913	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	34	465	0	ENST00000374690.3:c.925T>C	p.Tyr309His	p.Y309H	ENST00000374690	NM_000044.3	309	Tat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	175	582	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0048083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	85	219	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061220	38061225	+	inframe_deletion	In_Frame_Del	DEL	CGTTCT	CGTTCT	-			P-0048085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	108	666	0	ENST00000250448.2:c.764_769del	p.Glu255_Asn256del	p.E255_N256del	ENST00000250448	NM_004496.3	255	gAGAACGgc/ggc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176132088	176132088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	120	288	0	ENST00000367669.3:c.679G>A	p.Gly227Arg	p.G227R	ENST00000367669	NM_022457.5	227	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579524	7579530	+	frameshift_variant	Frame_Shift_Del	DEL	TGAACCA	TGAACCA	-			P-0048085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	118	704	0	ENST00000269305.4:c.157_163del	p.Trp53LeufsTer68	p.W53Lfs*68	ENST00000269305	NM_001126112.2	53	TGGTTCAct/ct																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	59	165	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	90	297	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	50	168	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	72	228	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347732	89347732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	243	765	2	ENST00000301030.4:c.5218G>A	p.Ala1740Thr	p.A1740T	ENST00000301030	NM_001256183.1	1740	Gcc/Acc																																																																														
MITF	4286	MSKCC	GRCh37	3	69928368	69928368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	106	398	0	ENST00000352241.4:c.188T>C	p.Leu63Pro	p.L63P	ENST00000352241	NM_198159.2	63	cTc/cCc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468107	50468107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	184	558	0	ENST00000331340.3:c.1342G>A	p.Ala448Thr	p.A448T	ENST00000331340	NM_006060.4	448	Gcg/Acg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0048091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	9	279	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	33	168	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	144	317	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0048091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	456	722	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132581	11132581	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	148	799	0	ENST00000344626.4:c.2797T>G	p.Phe933Val	p.F933V	ENST00000344626	NM_003072.3	933	Ttc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	413	794	8	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243859016	243859016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	140	80	0	ENST00000263826.5:c.49G>A	p.Glu17Lys	p.E17K	ENST00000263826	NM_005465.4	17	Gaa/Aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	48954299	48954299	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0048107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	149	126	0	ENST00000267163.4:c.1422-2A>T		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
KDM5A	5927	MSKCC	GRCh37	12	420137	420137	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	185	459	0	ENST00000399788.2:c.3130G>T	p.Glu1044Ter	p.E1044*	ENST00000399788	NM_001042603.1	1044	Gaa/Taa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778922	3778922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	302	690	3	ENST00000262367.5:c.6126G>T	p.Met2042Ile	p.M2042I	ENST00000262367	NM_004380.2	2042	atG/atT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	315	703	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0048108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	138	319	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920469	134920469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	87	688	1	ENST00000398015.3:c.2284G>A	p.Asp762Asn	p.D762N	ENST00000398015	NM_004441.4	762	Gac/Aac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189914	66189914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	64	336	0	ENST00000273854.3:c.3032C>A	p.Thr1011Asn	p.T1011N	ENST00000273854	NM_004439.5	1011	aCt/aAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377169	118377169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	62	396	0	ENST00000534358.1:c.10562C>G	p.Ser3521Cys	p.S3521C	ENST00000534358	NM_005933.3	3521	tCt/tGt																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133884	41133884	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	15	394	0	ENST00000379561.5:c.1744A>T	p.Ser582Cys	p.S582C	ENST00000379561	NM_002015.3	582	Agc/Tgc																																																																														
BARD1	580	MSKCC	GRCh37	2	215674145	215674145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	94	574	0	ENST00000260947.4:c.149G>C	p.Cys50Ser	p.C50S	ENST00000260947	NM_000465.2	50	tGc/tCc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974740	21974771	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCACCTCCTCTACCCGACCCCGGGCCGCGG	CCGCACCTCCTCTACCCGACCCCGGGCCGCGG	-			P-0048109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	95	349	0	ENST00000304494.5:c.56_87del	p.Ala19GlyfsTer14	p.A19Gfs*14	ENST00000304494	NM_000077.4	19	gCCGCGGCCCGGGGTCGGGTAGAGGAGGTGCGG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974740	21974771	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCACCTCCTCTACCCGACCCCGGGCCGCGG	CCGCACCTCCTCTACCCGACCCCGGGCCGCGG	-			P-0048109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	95	349	0	ENST00000304494.5:c.56_87del	p.Ala19GlyfsTer14	p.A19Gfs*14	ENST00000304494	NM_000077.4	19	gCCGCGGCCCGGGGTCGGGTAGAGGAGGTGCGG/g																																																																														
MPL	4352	MSKCC	GRCh37	1	43804278	43804278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	131	634	0	ENST00000372470.3:c.278G>A	p.Cys93Tyr	p.C93Y	ENST00000372470	NM_005373.2	93	tGc/tAc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193107284	193107284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	100	307	0	ENST00000367435.3:c.493G>T	p.Val165Leu	p.V165L	ENST00000367435	NM_024529.4	165	Gta/Tta																																																																														
CDC73	79577	MSKCC	GRCh37	1	193121568	193121569	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	36	285	0	ENST00000367435.3:c.967_968del	p.Val323AsnfsTer53	p.V323Nfs*53	ENST00000367435	NM_024529.4	322	tcTGta/tcta																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652330	206652330	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	59	871	0	ENST00000367120.3:c.1042del	p.Arg348AspfsTer32	p.R348Dfs*32	ENST00000367120	NM_014002.3	346	gCc/gc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851657	63851657	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	131	624	0	ENST00000279873.7:c.2435A>G	p.Lys812Arg	p.K812R	ENST00000279873	NM_032199.2	812	aAa/aGa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310934	123310934	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146244307		P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	123	534	0	ENST00000358487.5:c.494G>A	p.Arg165Gln	p.R165Q	ENST00000358487	NM_000141.4	165	cGg/cAg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456753	32456753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	425	736	1	ENST00000332351.3:c.139G>A	p.Glu47Lys	p.E47K	ENST00000332351	NM_024426.4	47	Gag/Aag																																																																														
EED	8726	MSKCC	GRCh37	11	85979605	85979605	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	58	315	0	ENST00000263360.6:c.966+2T>C		p.X322_splice	ENST00000263360	NM_003797.3	322																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347620	118347620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	277	597	0	ENST00000534358.1:c.3257T>C	p.Phe1086Ser	p.F1086S	ENST00000534358	NM_005933.3	1086	tTt/tCt																																																																														
CBL	867	MSKCC	GRCh37	11	119103164	119103164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	172	438	2	ENST00000264033.4:c.202C>T	p.Arg68Trp	p.R68W	ENST00000264033	NM_005188.3	68	Cgg/Tgg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641388	18641389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	22	235	0	ENST00000266497.5:c.2393dup	p.Asn798LysfsTer5	p.N798Kfs*5	ENST00000266497		796	cta/ctAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	164	745	1	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	48881489	48881490	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	60	291	0	ENST00000267163.4:c.219_220del	p.Arg73SerfsTer36	p.R73Sfs*36	ENST00000267163	NM_000321.2	71	AGa/a																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349428	73349428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	98	407	0	ENST00000377767.4:c.908T>C	p.Val303Ala	p.V303A	ENST00000377767	NM_014953.3	303	gTa/gCa																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	354	608	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	41961829	41961829	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	88	374	0	ENST00000219905.7:c.737A>G	p.Gln246Arg	p.Q246R	ENST00000219905	NM_001164273.1	246	cAg/cGg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900302	3900302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	167	634	0	ENST00000262367.5:c.794C>T	p.Ala265Val	p.A265V	ENST00000262367	NM_004380.2	265	gCc/gTc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041873	14041873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	157	387	0	ENST00000311895.7:c.2420A>G	p.His807Arg	p.H807R	ENST00000311895	NM_005236.2	807	cAt/cGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993365	72993365	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	413	918	0	ENST00000268489.5:c.680T>C	p.Val227Ala	p.V227A	ENST00000268489	NM_006885.3	227	gTc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	632	922	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984226	7984226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	179	734	0	ENST00000319144.4:c.503G>T	p.Arg168Met	p.R168M	ENST00000319144	NM_001139.2	168	aGg/aTg																																																																														
YES1	7525	MSKCC	GRCh37	18	748019	748019	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	181	469	1	ENST00000314574.4:c.372-1G>T		p.X124_splice	ENST00000314574	NM_005433.3	124																																																																															
MALT1	10892	MSKCC	GRCh37	18	56415030	56415030	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	48	432	0	ENST00000348428.3:c.2431A>C	p.Ile811Leu	p.I811L	ENST00000348428	NM_006785.3	811	Ata/Cta																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248651	10248651	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	128	649	1	ENST00000340748.4:c.4102C>T	p.Arg1368Ter	p.R1368*	ENST00000340748		1368	Cga/Tga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366260	15366260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	165	749	1	ENST00000263377.2:c.1895G>A	p.Arg632His	p.R632H	ENST00000263377	NM_058243.2	632	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218383	36218383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	389	1047	0	ENST00000222270.7:c.4162T>C	p.Tyr1388His	p.Y1388H	ENST00000222270	NM_014727.1	1388	Tac/Cac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218623	36218623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	447	904	0	ENST00000222270.7:c.4327C>T	p.His1443Tyr	p.H1443Y	ENST00000222270	NM_014727.1	1443	Cac/Tac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224774	36224774	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	212	1014	0	ENST00000222270.7:c.7159+1G>T		p.X2387_splice	ENST00000222270	NM_014727.1	2387																																																																															
BBC3	27113	MSKCC	GRCh37	19	47725130	47725130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	260	1056	0	ENST00000449228.1:c.614C>A	p.Pro205His	p.P205H	ENST00000449228	NM_001127240.2	205	cCt/cAt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966264	25966264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	149	639	0	ENST00000435504.4:c.2942C>T	p.Pro981Leu	p.P981L	ENST00000435504		981	cCa/cTa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	124	663	2	ENST00000435504.4:c.2333dupC	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																														
PAK7	0	MSKCC	GRCh37	20	9543672	9543672	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	94	371	0	ENST00000353224.5:c.1483-1G>T		p.X495_splice	ENST00000353224	NM_177990.2	495																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46281749	46281749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	209	771	1	ENST00000371998.3:c.4196G>A	p.Ser1399Asn	p.S1399N	ENST00000371998		1399	aGt/aAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478817	57478817	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	195	408	0	ENST00000371085.3:c.403A>C	p.Met135Leu	p.M135L	ENST00000371085	NM_000516.4	135	Atg/Ctg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231810	36231811	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	309	698	0	ENST00000300305.3:c.573_574del	p.Arg191SerfsTer21	p.R191Sfs*21	ENST00000300305		191	agAGcc/agcc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259206	36259206	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	116	731	0	ENST00000300305.3:c.285delC	p.Asn96ThrfsTer26	p.N96Tfs*26	ENST00000300305		95	ccC/cc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37092009	37092009	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	185	505	0	ENST00000231790.2:c.2136G>A	p.Trp712Ter	p.W712*	ENST00000231790	NM_000249.3	712	tgG/tgA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47127758	47127758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	235	518	0	ENST00000409792.3:c.5324G>A	p.Gly1775Glu	p.G1775E	ENST00000409792	NM_014159.6	1775	gGg/gAg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933431	49933431	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	381	853	0	ENST00000296474.3:c.2759del	p.Pro920HisfsTer16	p.P920Hfs*16	ENST00000296474	NM_002447.2	920	cCa/ca																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670334	134670334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	96	456	0	ENST00000398015.3:c.245C>G	p.Ala82Gly	p.A82G	ENST00000398015	NM_004441.4	82	gCc/gGc																																																																														
ATR	545	MSKCC	GRCh37	3	142186847	142186847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	69	345	0	ENST00000350721.4:c.6616A>G	p.Lys2206Glu	p.K2206E	ENST00000350721	NM_001184.3	2206	Aaa/Gaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801184	1801184	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	166	952	1	ENST00000260795.2:c.316del	p.Ala106ProfsTer20	p.A106Pfs*20	ENST00000260795		105	Ggg/gg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522532	67522532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	12	188	0	ENST00000274335.5:c.29C>T	p.Ala10Val	p.A10V	ENST00000274335		10	gCg/gTg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86642543	86642543	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	26	284	0	ENST00000274376.6:c.1102+2T>C		p.X368_splice	ENST00000274376	NM_002890.2	368																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056985	180056985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	225	924	0	ENST00000261937.6:c.634G>T	p.Asp212Tyr	p.D212Y	ENST00000261937	NM_182925.4	212	Gac/Tac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	130	688	2	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536164	106536164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	90	413	1	ENST00000369096.4:c.131C>T	p.Ala44Val	p.A44V	ENST00000369096	NM_001198.3	44	gCg/gTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683807	117683808	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	64	510	0	ENST00000368508.3:c.3339dup	p.Gln1114SerfsTer3	p.Q1114Sfs*3	ENST00000368508	NM_002944.2	1113	-/T																																																																														
MET	4233	MSKCC	GRCh37	7	116398590	116398590	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	52	485	0	ENST00000397752.3:c.2180A>C	p.Asp727Ala	p.D727A	ENST00000397752	NM_000245.2	727	gAc/gCc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162915	38162915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199766344		P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	148	639	0	ENST00000317025.8:c.2291G>A	p.Arg764His	p.R764H	ENST00000317025	NM_023034.1	764	cGt/cAt																																																																														
NBN	4683	MSKCC	GRCh37	8	90982764	90982764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	60	302	0	ENST00000265433.3:c.724G>T	p.Val242Phe	p.V242F	ENST00000265433	NM_002485.4	242	Gtt/Ttt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932717	39932717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	420	486	0	ENST00000378444.4:c.1882G>T	p.Ala628Ser	p.A628S	ENST00000378444	NM_001123385.1	628	Gca/Tca																																																																														
MED12	9968	MSKCC	GRCh37	X	70349635	70349635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	159	367	1	ENST00000374080.3:c.3797G>A	p.Arg1266His	p.R1266H	ENST00000374080		1266	cGc/cAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	224	622	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
RB1	5925	MSKCC	GRCh37	13	49033877	49033877	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	53	391	0	ENST00000267163.4:c.2014G>T	p.Glu672Ter	p.E672*	ENST00000267163	NM_000321.2	672	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577113	7577113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	164	791	0	ENST00000269305.4:c.825T>G	p.Cys275Trp	p.C275W	ENST00000269305	NM_001126112.2	275	tgT/tgG																																																																														
REL	5966	MSKCC	GRCh37	2	61145543	61145543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	67	331	0	ENST00000295025.8:c.655C>T	p.Arg219Cys	p.R219C	ENST00000295025	NM_002908.2	219	Cgt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272525	15272525	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	133	587	0	ENST00000263388.2:c.5914G>A	p.Glu1972Lys	p.E1972K	ENST00000263388	NM_000435.2	1972	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	48916747	48916747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	61	318	0	ENST00000267163.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000267163	NM_000321.2	93	Caa/Taa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215386	5215386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	157	663	0	ENST00000357368.4:c.4232C>T	p.Ser1411Phe	p.S1411F	ENST00000357368	NM_002850.3	1411	tCc/tTc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950309	17950309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	190	843	0	ENST00000458235.1:c.1418C>T	p.Ser473Phe	p.S473F	ENST00000458235	NM_000215.3	473	tCc/tTc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903687	114903687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	57	554	1	ENST00000543371.1:c.691C>T	p.Pro231Ser	p.P231S	ENST00000543371	NM_001198531.1	231	Cca/Tca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180310	32180310	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	174	755	1	ENST00000375023.3:c.2621G>A	p.Trp874Ter	p.W874*	ENST00000375023	NM_004557.3	874	tGg/tAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	100	427	0				ENST00000310581	NM_198253.2																																																																																
SESN2	83667	MSKCC	GRCh37	1	28598254	28598254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	283	928	0	ENST00000253063.3:c.226G>A	p.Val76Ile	p.V76I	ENST00000253063	NM_031459.4	76	Gta/Ata																																																																														
WT1	7490	MSKCC	GRCh37	11	32417938	32417938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	66	516	1	ENST00000332351.3:c.1114C>T	p.Pro372Ser	p.P372S	ENST00000332351	NM_024426.4	372	Cct/Tct																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68934916	68934916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	97	438	0	ENST00000487270.1:c.985C>T	p.Pro329Ser	p.P329S	ENST00000487270	NM_133509.3	329	Ccc/Tcc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855601	45855602	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	175	777	1	ENST00000391945.4:c.2055_2056delinsTT	p.Arg686Cys	p.R686C	ENST00000391945	NM_000400.3	685	gcCCgt/gcTTgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212293209	212293209	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	22	247	0	ENST00000342788.4:c.2644-1G>A		p.X882_splice	ENST00000342788	NM_005235.2	882																																																																															
PPARG	5468	MSKCC	GRCh37	3	12458543	12458543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	82	655	0	ENST00000287820.6:c.1160C>T	p.Pro387Leu	p.P387L	ENST00000287820	NM_015869.4	387	cCt/cTt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057708	180057708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	120	895	0	ENST00000261937.6:c.247G>A	p.Asp83Asn	p.D83N	ENST00000261937	NM_182925.4	83	Gac/Aac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923203	39923203	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0048111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	50	460	0	ENST00000378444.4:c.3505G>A	p.Asp1169Asn	p.D1169N	ENST00000378444	NM_001123385.1	1169	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	144	324	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0048113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	17	236	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	379	824	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
TET2	54790	MSKCC	GRCh37	4	106157059	106157059	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	220	421	0	ENST00000380013.4:c.1960C>T	p.Gln654Ter	p.Q654*	ENST00000380013	NM_001127208.2	654	Caa/Taa																																																																														
BTK	695	MSKCC	GRCh37	X	100608277	100608277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	304	669	0	ENST00000308731.7:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000308731	NM_000061.2	605	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151932982	151932982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	41	60	0	ENST00000262189.6:c.2689C>T	p.Arg897Ter	p.R897*	ENST00000262189	NM_170606.2	897	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70349165	70349165	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0048113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	29	595	0	ENST00000374080.3:c.3578-1G>A		p.X1193_splice	ENST00000374080		1193																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433896	49433896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	363	912	2	ENST00000301067.7:c.7657C>T	p.Gln2553Ter	p.Q2553*	ENST00000301067	NM_003482.3	2553	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425524	49425524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	358	791	0	ENST00000301067.7:c.12964C>T	p.Gln4322Ter	p.Q4322*	ENST00000301067	NM_003482.3	4322	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434352	49434352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	316	757	1	ENST00000301067.7:c.7201C>T	p.Arg2401Cys	p.R2401C	ENST00000301067	NM_003482.3	2401	Cgc/Tgc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40854906	40854906	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	245	503	0	ENST00000428826.2:c.2172C>G	p.Phe724Leu	p.F724L	ENST00000428826		724	ttC/ttG																																																																														
KIT	3815	MSKCC	GRCh37	4	55575606	55575606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	171	349	0	ENST00000288135.5:c.1132C>G	p.His378Asp	p.H378D	ENST00000288135	NM_000222.2	378	Cat/Gat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942775	44942775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	313	542	0	ENST00000377967.4:c.3355C>G	p.Leu1119Val	p.L1119V	ENST00000377967	NM_021140.2	1119	Cta/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	439	643	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	125	169	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73351584	73351584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	150	179	0	ENST00000377767.4:c.628C>T	p.Arg210Cys	p.R210C	ENST00000377767	NM_014953.3	210	Cgt/Tgt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81971495	81971495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	115	394	0	ENST00000359376.3:c.3185C>T	p.Thr1062Met	p.T1062M	ENST00000359376	NM_002661.3	1062	aCg/aTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81374383	81374383	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	184	309	0	ENST00000222390.5:c.679G>T	p.Glu227Ter	p.E227*	ENST00000222390	NM_000601.4	227	Gaa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970966	21970966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	124	587	1	ENST00000304494.5:c.392G>A	p.Arg131His	p.R131H	ENST00000304494	NM_000077.4	131	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970966	21970966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	124	587	1	ENST00000304494.5:c.392G>A	p.Arg131His	p.R131H	ENST00000304494	NM_000077.4	131	cGc/cAc																																																																														
CD79B	974	MSKCC	GRCh37	17	62007581	62007581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	570	714	1	ENST00000392795.3:c.286C>T	p.Arg96Cys	p.R96C	ENST00000392795	NM_001039933.1	96	Cgc/Tgc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119634940	119634940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	71	253	0	ENST00000316626.5:c.559C>T	p.Leu187Phe	p.L187F	ENST00000316626		187	Ctc/Ttc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0048117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	406	2092	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0048117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	24	765	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593247	67593247	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	49	391	0	ENST00000274335.5:c.1994del	p.Gly665AlafsTer3	p.G665Afs*3	ENST00000274335		665	Ggc/gc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593252	67593253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0048117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	11	424	0	ENST00000274335.5:c.1999_2000dup	p.Lys668Ter	p.K668*	ENST00000274335		666	-/GT																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843499	156843499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	49	659	0	ENST00000524377.1:c.925C>T	p.Pro309Ser	p.P309S	ENST00000524377	NM_002529.3	309	Ccg/Tcg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38272081	38272081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	33	595	0	ENST00000425967.3:c.2137G>A	p.Asp713Asn	p.D713N	ENST00000425967	NM_001174067.1	713	Gat/Aat																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449845	149449845	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	45	728	0	ENST00000286301.3:c.1219A>T	p.Ile407Leu	p.I407L	ENST00000286301	NM_005211.3	407	Ata/Tta																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045742	26045742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	33	458	0	ENST00000540144.1:c.104G>C	p.Gly35Ala	p.G35A	ENST00000540144	NM_003531.2	35	gGc/gCc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911276	29911276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	32	404	1	ENST00000376809.5:c.575T>A	p.Leu192His	p.L192H	ENST00000376809	NM_002116.7	192	cTc/cAc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141549544	141549544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	31	420	0	ENST00000220592.5:c.2044C>A	p.His682Asn	p.H682N	ENST00000220592	NM_012154.3	682	Cac/Aac																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412044	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0048159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	104	583	0	ENST00000397752.3:c.3028_3028+1insT	p.Asp1010ValfsTer5	p.D1010Vfs*5	ENST00000397752	NM_000245.2	1010	gat/gTat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259667	16259667	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	35	394	0	ENST00000375759.3:c.6932C>G	p.Ser2311Ter	p.S2311*	ENST00000375759	NM_015001.2	2311	tCa/tGa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242478	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAG	GAATTAAGAGAAG	C			P-0048160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	61	344	0	ENST00000275493.2:c.2236_2248delinsC	p.Glu746_Ala750delinsPro	p.E746_A750delinsP	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	432	637	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175136	112175136	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0048161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	78	183	0	ENST00000257430.4:c.3845C>G	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/tGa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672341	86672342	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	66	253	0	ENST00000274376.6:c.2149dup	p.Ile717AsnfsTer9	p.I717Nfs*9	ENST00000274376	NM_002890.2	715	gaa/gAaa																																																																														
VHL	7428	MSKCC	GRCh37	3	10188297	10188297	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	150	490	0	ENST00000256474.2:c.444delT	p.Phe148LeufsTer11	p.F148Lfs*11	ENST00000256474	NM_000551.3	147	aTt/at																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714436	40714436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	29	430	0	ENST00000373198.4:c.3961G>A	p.Glu1321Lys	p.E1321K	ENST00000373198	NM_133170.3	1321	Gag/Aag																																																																														
TET2	54790	MSKCC	GRCh37	4	106197296	106197296	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	112	300	0	ENST00000380013.4:c.5629A>G	p.Lys1877Glu	p.K1877E	ENST00000380013	NM_001127208.2	1877	Aag/Gag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17940937	17940938	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0048163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	238	837	0	ENST00000458235.1:c.3186_3187delinsAT	p.Pro1063Ser	p.P1063S	ENST00000458235	NM_000215.3	1062	gcGCct/gcATct																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584504	52584504	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	192	484	0	ENST00000394830.3:c.4509C>A	p.Tyr1503Ter	p.Y1503*	ENST00000394830	NM_018313.4	1503	taC/taA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	173	376	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	375	756	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	74	264	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																														
CBL	867	MSKCC	GRCh37	11	119169085	119169085	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146517083		P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	120	384	0	ENST00000264033.4:c.2269G>A	p.Ala757Thr	p.A757T	ENST00000264033	NM_005188.3	757	Gca/Aca																																																																														
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	293	608	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	339	806	2	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	469	313	14	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
KIT	3815	MSKCC	GRCh37	4	55569954	55569954	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138585275		P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	58	276	0	ENST00000288135.5:c.821C>T	p.Thr274Met	p.T274M	ENST00000288135	NM_000222.2	274	aCg/aTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	39	499	3	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	313	779	11	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	106	318	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	138	430	3	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3790455	3790455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	232	571	2	ENST00000262367.5:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000262367	NM_004380.2	1360	Cga/Tga																																																																														
MITF	4286	MSKCC	GRCh37	3	69990481	69990481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201247895		P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	61	203	0	ENST00000352241.4:c.761C>T	p.Thr254Met	p.T254M	ENST00000352241	NM_198159.2	254	aCg/aTg																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748480	43748480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	170	254	0	ENST00000523873.1:c.434G>A	p.Arg145Gln	p.R145Q	ENST00000523873		145	cGa/cAa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164563	36164563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	169	648	0	ENST00000300305.3:c.1312G>A	p.Gly438Ser	p.G438S	ENST00000300305		438	Ggc/Agc																																																																														
MGA	23269	MSKCC	GRCh37	15	42041375	42041375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	204	545	0	ENST00000219905.7:c.5570C>T	p.Ser1857Leu	p.S1857L	ENST00000219905	NM_001164273.1	1857	tCg/tTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123181311	123181311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	42	105	0	ENST00000218089.9:c.775C>T	p.Arg259Ter	p.R259*	ENST00000218089	NM_001042749.1	259	Cga/Tga																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217623	7217623	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	197	418	0	ENST00000380728.2:c.304C>T	p.Arg102Ter	p.R102*	ENST00000380728		102	Cga/Tga																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856520	45856520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	316	643	0	ENST00000391945.4:c.1738G>A	p.Ala580Thr	p.A580T	ENST00000391945	NM_000400.3	580	Gcc/Acc																																																																														
SMO	6608	MSKCC	GRCh37	7	128848687	128848687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	303	610	0	ENST00000249373.3:c.1352G>A	p.Arg451His	p.R451H	ENST00000249373	NM_005631.4	451	cGc/cAc																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957495	175957495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	100	434	0	ENST00000367669.3:c.1901G>A	p.Arg634His	p.R634H	ENST00000367669	NM_022457.5	634	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	425	848	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
RET	5979	MSKCC	GRCh37	10	43609084	43609086	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	383	803	0	ENST00000355710.3:c.1846_1848delGAG	p.Glu616del	p.E616del	ENST00000355710	NM_020975.4	614	GAG/-																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526531	31526531	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77034974		P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	260	559	0	ENST00000344624.3:c.509C>T	p.Pro170Leu	p.P170L	ENST00000344624		170	cCg/cTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048667	180048667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	442	843	0	ENST00000261937.6:c.1895G>A	p.Arg632His	p.R632H	ENST00000261937	NM_182925.4	632	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445149	49445149	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	363	783	1	ENST00000301067.7:c.2317delC	p.Gln773SerfsTer157	p.Q773Sfs*157	ENST00000301067	NM_003482.3	773	Cag/ag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942852	68942852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	123	531	1	ENST00000288368.4:c.664G>A	p.Glu222Lys	p.E222K	ENST00000288368	NM_024870.2	222	Gaa/Aaa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099262	4099262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	304	813	3	ENST00000262948.5:c.856G>A	p.Gly286Arg	p.G286R	ENST00000262948	NM_030662.3	286	Ggg/Agg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245026	41245026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	179	584	0	ENST00000357654.3:c.2522G>A	p.Arg841Gln	p.R841Q	ENST00000357654	NM_007294.3	841	cGg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145672	11145672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	385	764	1	ENST00000344626.4:c.4034C>T	p.Ser1345Leu	p.S1345L	ENST00000344626	NM_003072.3	1345	tCg/tTg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026780	6026780	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138222146		P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	28	57	0	ENST00000265849.7:c.1616C>T	p.Ala539Val	p.A539V	ENST00000265849	NM_000535.5	539	gCg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11101923	11101923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	273	821	0	ENST00000344626.4:c.1343G>A	p.Arg448His	p.R448H	ENST00000344626	NM_003072.3	448	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106558	27106558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	344	747	1	ENST00000324856.7:c.6169C>T	p.Arg2057Trp	p.R2057W	ENST00000324856	NM_006015.4	2057	Cgg/Tgg																																																																														
TET2	54790	MSKCC	GRCh37	4	106155386	106155386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	142	385	0	ENST00000380013.4:c.287G>A	p.Arg96His	p.R96H	ENST00000380013	NM_001127208.2	96	cGc/cAc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31508786	31508786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	238	550	0	ENST00000344624.3:c.1529G>A	p.Arg510His	p.R510H	ENST00000344624		510	cGc/cAc																																																																														
CD276	80381	MSKCC	GRCh37	15	73996257	73996257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	47	118	0	ENST00000318443.5:c.991C>T	p.Arg331Cys	p.R331C	ENST00000318443	NM_001024736.1	331	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106592	27106592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	346	703	1	ENST00000324856.7:c.6203C>T	p.Ser2068Leu	p.S2068L	ENST00000324856	NM_006015.4	2068	tCg/tTg																																																																														
NBN	4683	MSKCC	GRCh37	8	90958480	90958480	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	46	132	1	ENST00000265433.3:c.1958del	p.Lys653SerfsTer4	p.K653Sfs*4	ENST00000265433	NM_002485.4	653	aAg/ag																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2491375	2491375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	477	969	1	ENST00000355716.4:c.418G>A	p.Ala140Thr	p.A140T	ENST00000355716	NM_003820.2	140	Gct/Act																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748014	72748014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	287	659	0	ENST00000357731.5:c.164C>T	p.Thr55Met	p.T55M	ENST00000357731	NM_173808.2	55	aCg/aTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468261	120468261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	341	705	1	ENST00000256646.2:c.4178G>A	p.Arg1393His	p.R1393H	ENST00000256646	NM_024408.3	1393	cGc/cAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552736	18552736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	85	422	0	ENST00000266497.5:c.2147G>T	p.Trp716Leu	p.W716L	ENST00000266497		716	tGg/tTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557604	95557604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	114	383	0	ENST00000343455.3:c.5463G>A	p.Met1821Ile	p.M1821I	ENST00000343455	NM_177438.2	1821	atG/atA																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38591612	38591612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	72	423	0	ENST00000299084.4:c.71G>A	p.Arg24Gln	p.R24Q	ENST00000299084	NM_152594.2	24	cGa/cAa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130308	2130308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	460	832	0	ENST00000219476.3:c.3540G>T	p.Lys1180Asn	p.K1180N	ENST00000219476	NM_000548.3	1180	aaG/aaT																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81941300	81941300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	304	550	0	ENST00000359376.3:c.1478G>A	p.Arg493Gln	p.R493Q	ENST00000359376	NM_002661.3	493	cGg/cAg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621149	1621149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	451	880	1	ENST00000344749.5:c.997G>A	p.Gly333Ser	p.G333S	ENST00000344749	NM_001136139.2	333	Ggc/Agc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250476	10250476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	303	635	1	ENST00000340748.4:c.3776G>A	p.Arg1259Gln	p.R1259Q	ENST00000340748		1259	cGg/cAg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47635692	47635692	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	120	167	0	ENST00000233146.2:c.364A>T	p.Lys122Ter	p.K122*	ENST00000233146	NM_000251.2	122	Aag/Tag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99169361	99169361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	213	482	1	ENST00000074304.5:c.1291C>T	p.Arg431Trp	p.R431W	ENST00000074304	NM_001134224.1	431	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713480	40713480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	216	674	0	ENST00000373198.4:c.4035G>T	p.Gln1345His	p.Q1345H	ENST00000373198	NM_133170.3	1345	caG/caT																																																																														
EP300	2033	MSKCC	GRCh37	22	41566433	41566433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	121	292	2	ENST00000263253.7:c.4310C>T	p.Ala1437Val	p.A1437V	ENST00000263253	NM_001429.3	1437	gCa/gTa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949022	44949022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	80	152	0	ENST00000377967.4:c.3583C>T	p.Pro1195Ser	p.P1195S	ENST00000377967	NM_021140.2	1195	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	56	567	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434713	110434713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	147	710	4	ENST00000375856.3:c.3688G>A	p.Gly1230Ser	p.G1230S	ENST00000375856	NM_003749.2	1230	Ggt/Agt																																																																														
RB1	5925	MSKCC	GRCh37	13	48916850	48916850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	16	196	0	ENST00000267163.4:c.380G>A	p.Ser127Asn	p.S127N	ENST00000267163	NM_000321.2	127	aGt/aAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	31	374	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200690	128200690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	43	663	0	ENST00000341105.2:c.1115C>T	p.Ala372Val	p.A372V	ENST00000341105	NM_032638.4	372	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100870	27100870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	28	442	0	ENST00000324856.7:c.4152C>G	p.His1384Gln	p.H1384Q	ENST00000324856	NM_006015.4	1384	caC/caG																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39311689	39311689	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	20	461	0	ENST00000373001.3:c.970A>T	p.Thr324Ser	p.T324S	ENST00000373001	NM_022157.3	324	Act/Tct																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276457	115276457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	25	353	0	ENST00000438362.2:c.871G>A	p.Val291Ile	p.V291I	ENST00000438362	NM_001242891.1	291	Gtc/Atc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841454	156841454	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	121	478	0	ENST00000524377.1:c.757A>T	p.Asn253Tyr	p.N253Y	ENST00000524377	NM_002529.3	253	Aat/Tat																																																																														
SDHC	6391	MSKCC	GRCh37	1	161293460	161293460	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	35	215	0	ENST00000367975.2:c.77A>T	p.Asn26Ile	p.N26I	ENST00000367975	NM_003001.3	26	aAt/aTt																																																																														
RET	5979	MSKCC	GRCh37	10	43613851	43613851	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	64	599	0	ENST00000355710.3:c.2315T>A	p.Leu772Gln	p.L772Q	ENST00000355710	NM_020975.4	772	cTg/cAg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112910808	112910808	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	33	275	0	ENST00000351677.2:c.817A>T	p.Asn273Tyr	p.N273Y	ENST00000351677	NM_002834.3	273	Aac/Tac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3795278	3795278	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	32	291	0	ENST00000262367.5:c.3914G>T	p.Gly1305Val	p.G1305V	ENST00000262367	NM_004380.2	1305	gGt/gTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81916887	81916887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	43	506	0	ENST00000359376.3:c.707del	p.Pro236ArgfsTer27	p.P236Rfs*27	ENST00000359376	NM_002661.3	236	Ccg/cg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885935	59885935	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	17	322	0	ENST00000259008.2:c.811G>C	p.Val271Leu	p.V271L	ENST00000259008	NM_032043.2	271	Gtt/Ctt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39573276	39573276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	20	282	0	ENST00000262039.4:c.757G>A	p.Val253Met	p.V253M	ENST00000262039	NM_002647.2	253	Gtg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097676	11097676	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	39	643	0	ENST00000344626.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000344626	NM_003072.3	286	Gaa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210812	36210812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	142	694	0	ENST00000222270.7:c.563G>C	p.Arg188Pro	p.R188P	ENST00000222270	NM_014727.1	188	cGg/cCg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99162431	99162431	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	34	277	0	ENST00000074304.5:c.950-1G>T		p.X317_splice	ENST00000074304	NM_001134224.1	317																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212589862	212589862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	40	341	0	ENST00000342788.4:c.680G>T	p.Ser227Ile	p.S227I	ENST00000342788	NM_005235.2	227	aGt/aTt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748171	41748171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	24	460	0	ENST00000226382.2:c.598C>T	p.Pro200Ser	p.P200S	ENST00000226382	NM_003924.3	200	Ccc/Tcc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750455	41750455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	29	469	0	ENST00000226382.2:c.173C>A	p.Pro58His	p.P58H	ENST00000226382	NM_003924.3	58	cCt/cAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535442	66535442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	26	544	0	ENST00000273854.3:c.19del	p.Arg7GlyfsTer55	p.R7Gfs*55	ENST00000273854	NM_004439.5	7	Cgg/gg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530360	187530360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	22	292	0	ENST00000441802.2:c.10183A>T	p.Thr3395Ser	p.T3395S	ENST00000441802	NM_005245.3	3395	Acc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1293987	1293987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	403	807	0	ENST00000310581.5:c.1014G>T	p.Lys338Asn	p.K338N	ENST00000310581	NM_198253.2	338	aaG/aaT																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518069	176518069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	41	553	0	ENST00000292408.4:c.567G>T	p.Gln189His	p.Q189H	ENST00000292408	NM_213647.1	189	caG/caT																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552985	106552985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	39	514	0	ENST00000369096.4:c.950G>T	p.Gly317Val	p.G317V	ENST00000369096	NM_001198.3	317	gGg/gTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031747	69031747	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0048168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	23	406	1	ENST00000288368.4:c.3502C>T	p.Gln1168Ter	p.Q1168*	ENST00000288368	NM_024870.2	1168	Cag/Tag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412940	63412940	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	362	679	0	ENST00000330258.3:c.227del	p.Gly76AspfsTer24	p.G76Dfs*24	ENST00000330258	NM_152424.3	76	gGa/ga																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	205	382	0	ENST00000308159.5:c.43C>G	p.Gln15Glu	p.Q15E	ENST00000308159	NM_014669.4	15	Cag/Gag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342559	118342559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	71	212	0	ENST00000534358.1:c.685C>T	p.Pro229Ser	p.P229S	ENST00000534358	NM_005933.3	229	Cct/Tct																																																																														
TET2	54790	MSKCC	GRCh37	4	106196794	106196794	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	202	343	0	ENST00000380013.4:c.5127T>A	p.Cys1709Ter	p.C1709*	ENST00000380013	NM_001127208.2	1709	tgT/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	799	723	0	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76931752	76931752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	161	322	0	ENST00000373344.5:c.3778G>A	p.Asp1260Asn	p.D1260N	ENST00000373344	NM_000489.3	1260	Gat/Aat																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14317331	14317331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	119	368	0	ENST00000256196.4:c.179G>T	p.Arg60Ile	p.R60I	ENST00000256196		60	aGa/aTa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133912	41133912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	330	457	0	ENST00000379561.5:c.1716G>T	p.Met572Ile	p.M572I	ENST00000379561	NM_002015.3	572	atG/atT																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554360	81554360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	530	337	0	ENST00000298171.2:c.380T>A	p.Leu127His	p.L127H	ENST00000298171	NM_000369.2	127	cTc/cAc																																																																														
BLM	641	MSKCC	GRCh37	15	91341514	91341514	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	211	383	0	ENST00000355112.3:c.3305A>T	p.His1102Leu	p.H1102L	ENST00000355112	NM_000057.2	1102	cAt/cTt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2125840	2125841	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	479	688	1	ENST00000219476.3:c.2586_2587delinsTT	p.Glu863Ter	p.E863*	ENST00000219476	NM_000548.3	862	gcGGag/gcTTag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862821	9862821	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	344	685	1	ENST00000330684.3:c.2482A>T	p.Met828Leu	p.M828L	ENST00000330684	NM_001134407.1	828	Atg/Ttg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81973550	81973550	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	288	468	0	ENST00000359376.3:c.3367G>C	p.Glu1123Gln	p.E1123Q	ENST00000359376	NM_002661.3	1123	Gaa/Caa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89839793	89839793	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	386	595	2	ENST00000389301.3:c.1901-1G>T		p.X634_splice	ENST00000389301	NM_000135.2	634																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15961224	15961224	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	413	305	0	ENST00000268712.3:c.6165C>G	p.Ile2055Met	p.I2055M	ENST00000268712	NM_006311.3	2055	atC/atG																																																																														
CD79B	974	MSKCC	GRCh37	17	62007234	62007234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	815	688	0	ENST00000392795.3:c.448G>T	p.Ala150Ser	p.A150S	ENST00000392795	NM_001039933.1	150	Gca/Tca																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39550313	39550313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	151	259	0	ENST00000262039.4:c.424G>C	p.Asp142His	p.D142H	ENST00000262039	NM_002647.2	142	Gac/Cac																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868389	45868389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	506	783	0	ENST00000391945.4:c.388G>T	p.Val130Phe	p.V130F	ENST00000391945	NM_000400.3	130	Gtc/Ttc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99189349	99189350	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	340	542	1	ENST00000074304.5:c.2605_2606delinsTT	p.Arg869Leu	p.R869L	ENST00000074304	NM_001134224.1	869	CGg/TTg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268351	46268351	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	197	362	0	ENST00000371998.3:c.2738A>T	p.Gln913Leu	p.Q913L	ENST00000371998		913	cAg/cTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106194072	106194072	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	91	215	0	ENST00000380013.4:c.4534G>C	p.Ala1512Pro	p.A1512P	ENST00000380013	NM_001127208.2	1512	Gca/Cca																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189500	56189500	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	189	341	0	ENST00000399503.3:c.4532C>G	p.Thr1511Arg	p.T1511R	ENST00000399503	NM_005921.1	1511	aCa/aGa																																																																														
APC	324	MSKCC	GRCh37	5	112176708	112176708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	79	197	0	ENST00000257430.4:c.5417C>T	p.Ser1806Leu	p.S1806L	ENST00000257430	NM_000038.5	1806	tCa/tTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670922	30670922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	447	704	3	ENST00000376406.3:c.5824G>A	p.Gly1942Arg	p.G1942R	ENST00000376406	NM_014641.2	1942	Ggg/Agg																																																																														
PARK2	0	MSKCC	GRCh37	6	162206818	162206818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	205	422	0	ENST00000366898.1:c.857C>A	p.Ser286Tyr	p.S286Y	ENST00000366898	NM_004562.2	286	tCc/tAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55260483	55260483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	238	413	0	ENST00000275493.2:c.2650G>T	p.Glu884Ter	p.E884*	ENST00000275493	NM_005228.3	884	Gaa/Taa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412455	80412455	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	323	295	0	ENST00000286548.4:c.586T>A	p.Leu196Ile	p.L196I	ENST00000286548	NM_002072.3	196	Tta/Ata																																																																														
ATRX	546	MSKCC	GRCh37	X	76918885	76918885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	188	491	0	ENST00000373344.5:c.4106G>T	p.Arg1369Ile	p.R1369I	ENST00000373344	NM_000489.3	1369	aGa/aTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937293	76937293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	71	406	0	ENST00000373344.5:c.3455G>T	p.Gly1152Val	p.G1152V	ENST00000373344	NM_000489.3	1152	gGc/gTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123156488	123156488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	72	261	0	ENST00000218089.9:c.11C>A	p.Ala4Asp	p.A4D	ENST00000218089	NM_001042749.1	4	gCt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	61	353	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	25	637	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
STK11	6794	MSKCC	GRCh37	19	1222005	1222005	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	176	803	0	ENST00000326873.7:c.920+1del		p.S307fs	ENST00000326873	NM_000455.4	307	aGc/ac																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134488	2134504	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGGACGGGGAAAGT	CCCTGGACGGGGAAAGT	A			P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	260	1059	0	ENST00000219476.3:c.4265_4281delinsA	p.Thr1422LysfsTer49	p.T1422Kfs*49	ENST00000219476	NM_000548.3	1422	aCCCTGGACGGGGAAAGT/aA																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743577	46743577	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			831	171	643	0	ENST00000371975.4:c.1958A>G	p.Glu653Gly	p.E653G	ENST00000371975	NM_003579.3	653	gAg/gGg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112101	115112101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			953	251	958	0	ENST00000257566.3:c.1639T>A	p.Ser547Thr	p.S547T	ENST00000257566	NM_016569.3	547	Tct/Act																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405830	157405830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047037-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	105	426	0	ENST00000346085.5:c.2072G>T	p.Gly691Val	p.G691V	ENST00000346085	NM_020732.3	691	gGa/gTa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	48	229	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	369	817	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0047981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	80	332	1				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140477854	140477854	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	113	472	0	ENST00000288602.6:c.1454T>G	p.Leu485Trp	p.L485W	ENST00000288602	NM_004333.4	485	tTg/tGg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332271	70332271	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs114779544		P-0047981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	83	310	0	ENST00000373644.4:c.176A>G	p.Lys59Arg	p.K59R	ENST00000373644	NM_030625.2	59	aAg/aGg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950099	38950099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	105	502	1	ENST00000357387.3:c.3851C>T	p.Ser1284Leu	p.S1284L	ENST00000357387	NM_152756.3	1284	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980798	40980798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	158	612	0	ENST00000373198.4:c.1688C>T	p.Ser563Phe	p.S563F	ENST00000373198	NM_133170.3	563	tCc/tTc																																																																														
PGR	5241	MSKCC	GRCh37	11	100912825	100912825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	60	312	0	ENST00000325455.5:c.2497G>A	p.Glu833Lys	p.E833K	ENST00000325455	NM_001202474.3	833	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18439794	18439795	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0047981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	74	291	1	ENST00000266497.5:c.692_693delinsTT	p.Ser231Phe	p.S231F	ENST00000266497		231	tCC/tTT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509229	106509229	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	171	636	0	ENST00000359195.3:c.1223T>G	p.Val408Gly	p.V408G	ENST00000359195	NM_002649.2	408	gTg/gGg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216494	36216497	+	frameshift_variant	Frame_Shift_Del	DEL	CACG	CACG	TTA			P-0047981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	281	960	2	ENST00000222270.7:c.3757_3760delinsTTA	p.His1253LeufsTer102	p.H1253Lfs*102	ENST00000222270	NM_014727.1	1253	CACGtc/TTAtc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	1238	502	0	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	524	684	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435234	110435234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	161	513	1	ENST00000375856.3:c.3167C>T	p.Pro1056Leu	p.P1056L	ENST00000375856	NM_003749.2	1056	cCg/cTg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	73	555	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	150	412	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	91	323	0	ENST00000349496.5:c.109T>C	p.Ser37Pro	p.S37P	ENST00000349496	NM_001904.3	37	Tct/Cct																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	51	302	2	ENST00000281708.4:c.1513C>A	p.Arg505Ser	p.R505S	ENST00000281708	NM_033632.3	505	Cgc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	329	405	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	140	396	0				ENST00000310581	NM_198253.2																																																																																
ELF3	1999	MSKCC	GRCh37	1	201982392	201982393	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	73	950	0	ENST00000359651.3:c.772dup	p.Trp258LeufsTer43	p.W258Lfs*43	ENST00000359651		257	-/T																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123650	11123650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	237	676	2	ENST00000344626.4:c.2300C>T	p.Ser767Phe	p.S767F	ENST00000344626	NM_003072.3	767	tCc/tTc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983019	201983020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	97	883	1	ENST00000359651.3:c.869dup	p.Leu292ProfsTer9	p.L292Pfs*9	ENST00000359651		290	gag/gAag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984391	201984391	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	62	736	0	ENST00000359651.3:c.1056C>G	p.Tyr352Ter	p.Y352*	ENST00000359651		352	taC/taG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984689	72984689	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	90	901	0	ENST00000268489.5:c.2895G>C	p.Met965Ile	p.M965I	ENST00000268489	NM_006885.3	965	atG/atC																																																																														
ERF	2077	MSKCC	GRCh37	19	42753468	42753468	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	416	1454	0	ENST00000222329.4:c.796C>G	p.Pro266Ala	p.P266A	ENST00000222329	NM_006494.2	266	Ccg/Gcg																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156732	20156732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	235	388	0	ENST00000379607.5:c.25G>C	p.Gly9Arg	p.G9R	ENST00000379607	NM_001412.3	9	Ggt/Cgt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459100	120459100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0048047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	153	645	0	ENST00000256646.2:c.6245C>G	p.Pro2082Arg	p.P2082R	ENST00000256646	NM_024408.3	2082	cCt/cGt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265112	10265112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0048047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	125	676	0	ENST00000340748.4:c.1828del	p.Glu610ArgfsTer87	p.E610Rfs*87	ENST00000340748		610	Gag/ag																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502725	149502725	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	144	806	0	ENST00000261799.4:c.2063A>G	p.Asp688Gly	p.D688G	ENST00000261799	NM_002609.3	688	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	399	705	0	ENST00000269305.4:c.796G>C	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Cga																																																																														
SMO	6608	MSKCC	GRCh37	7	128843242	128843242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	371	966	0	ENST00000249373.3:c.349C>T	p.Arg117Cys	p.R117C	ENST00000249373	NM_005631.4	117	Cgc/Tgc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321555	62321555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	618	1036	1	ENST00000508582.2:c.2329G>A	p.Glu777Lys	p.E777K	ENST00000508582		777	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401031	139401031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	166	1193	0	ENST00000277541.6:c.3962C>T	p.Thr1321Ile	p.T1321I	ENST00000277541	NM_017617.3	1321	aCc/aTc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929224	44929227	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0048048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	221	350	0	ENST00000377967.4:c.2326_2329del	p.Asp776IlefsTer8	p.D776Ifs*8	ENST00000377967	NM_021140.2	775	tCAGAc/tc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0048049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	58	572	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	54	641	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	53	478	1	ENST00000371953.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000371953	NM_000314.4	130	cGa/cTa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650711	67650711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	82	552	2	ENST00000264010.4:c.1016G>A	p.Arg339Gln	p.R339Q	ENST00000264010	NM_006565.3	339	cGg/cAg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926249	112926249	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0048049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	76	492	0	ENST00000351677.2:c.1382C>G	p.Ala461Gly	p.A461G	ENST00000351677	NM_002834.3	461	gCt/gGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0048051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	312	411	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
MAX	4149	MSKCC	GRCh37	14	65544748	65544748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	345	436	0	ENST00000358664.4:c.178C>T	p.Arg60Trp	p.R60W	ENST00000358664	NM_002382.4	60	Cgg/Tgg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593662	55593664	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0048051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	318	432	0	ENST00000288135.5:c.1729_1731del	p.Pro577del	p.P577del	ENST00000288135	NM_000222.2	576	ctTCCt/ctt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88659551	88659551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0048051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	92	383	0	ENST00000372037.3:c.334G>A	p.Asp112Asn	p.D112N	ENST00000372037	NM_004329.2	112	Gat/Aat																																																																														
KDM5A	5927	MSKCC	GRCh37	12	475158	475158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	393	550	0	ENST00000399788.2:c.479C>T	p.Ser160Leu	p.S160L	ENST00000399788	NM_001042603.1	160	tCa/tTa																																																																														
MGA	23269	MSKCC	GRCh37	15	41991092	41991092	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	275	397	0	ENST00000219905.7:c.2045C>G	p.Thr682Arg	p.T682R	ENST00000219905	NM_001164273.1	682	aCa/aGa																																																																														
SRC	6714	MSKCC	GRCh37	20	36022324	36022324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	612	934	2	ENST00000358208.4:c.377C>T	p.Ser126Leu	p.S126L	ENST00000358208		126	tCg/tTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440833	52440853	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGGCCCTTACCCTGCAGTG	CAGGGCCCTTACCCTGCAGTG	-			P-0048051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	481	651	0	ENST00000460680.1:c.651_659+12del		p.X217_splice	ENST00000460680	NM_004656.3	217																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342452	118342452	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	GATCT			P-0048051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	83	197	0	ENST00000534358.1:c.578delinsGATCT	p.Pro193ArgfsTer10	p.P193Rfs*10	ENST00000534358	NM_005933.3	193	cCa/cGATCTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	232	595	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	221	349	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0048055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	89	262	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943658	9943658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	222	579	0	ENST00000330684.3:c.1283C>T	p.Thr428Met	p.T428M	ENST00000330684	NM_001134407.1	428	aCg/aTg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26970440	26970441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0048055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	30	133	0	ENST00000381527.3:c.815dup	p.Met273AspfsTer3	p.M273Dfs*3	ENST00000381527	NM_001260.1	270	ata/atAa																																																																														
APC	324	MSKCC	GRCh37	5	112111380	112111381	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0048055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	49	190	0	ENST00000257430.4:c.478dup	p.Ala160GlyfsTer8	p.A160Gfs*8	ENST00000257430	NM_000038.5	159	-/G																																																																														
NF2	4771	MSKCC	GRCh37	22	30077427	30077427	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	13	141	0	ENST00000338641.4:c.1575-1G>C		p.X525_splice	ENST00000338641	NM_000268.3	525																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98224163	98224163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138154222		P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	25	280	0	ENST00000331920.6:c.2678G>A	p.Arg893His	p.R893H	ENST00000331920	NM_000264.3	893	cGc/cAc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908873	101908873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200595614		P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	43	352	0	ENST00000374994.4:c.1237C>T	p.Arg413Ter	p.R413*	ENST00000374994	NM_004612.2	413	Cga/Tga																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497215	149497215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	49	580	0	ENST00000261799.4:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000261799	NM_002609.3	1035	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106532	27106532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	72	614	0	ENST00000324856.7:c.6143G>A	p.Trp2048Ter	p.W2048*	ENST00000324856	NM_006015.4	2048	tGg/tAg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781494	135781494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	32	356	0	ENST00000298552.3:c.1471A>G	p.Thr491Ala	p.T491A	ENST00000298552	NM_001162426.1	491	Aca/Gca																																																																														
KDM5A	5927	MSKCC	GRCh37	12	422317	422317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	34	320	0	ENST00000399788.2:c.2941G>A	p.Ala981Thr	p.A981T	ENST00000399788	NM_001042603.1	981	Gcc/Acc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679265	88679265	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	26	427	0	ENST00000360948.2:c.772C>A	p.Leu258Met	p.L258M	ENST00000360948	NM_001012338.2	258	Ctg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579454	7579457	+	frameshift_variant	Frame_Shift_Del	DEL	GCTG	GCTG	-			P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	38	708	0	ENST00000269305.4:c.230_233del	p.Pro77GlnfsTer45	p.P77Qfs*45	ENST00000269305	NM_001126112.2	77	cCAGCa/ca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702555	52702555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	28	296	0	ENST00000394830.3:c.343G>A	p.Asp115Asn	p.D115N	ENST00000394830	NM_018313.4	115	Gac/Aac																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778056	27778056	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	51	508	0	ENST00000369163.2:c.205C>T	p.Gln69Ter	p.Q69*	ENST00000369163	NM_003536.2	69	Cag/Tag																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137527362	137527362	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	23	378	0	ENST00000367739.4:c.284C>G	p.Ser95Ter	p.S95*	ENST00000367739	NM_000416.2	95	tCa/tGa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993014	72993014	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	52	641	0	ENST00000268489.5:c.1031A>C	p.Asn344Thr	p.N344T	ENST00000268489	NM_006885.3	344	aAc/aCc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993008	72993008	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0048056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	49	636	0	ENST00000268489.5:c.1037del	p.Asn346ThrfsTer6	p.N346Tfs*6	ENST00000268489	NM_006885.3	346	aAc/ac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0048059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	124	447	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	74	200	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020733	37020733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	206	509	1	ENST00000358127.4:c.112C>T	p.Arg38Cys	p.R38C	ENST00000358127	NM_001280556.1	38	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	225	516	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35872436	35872436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	237	706	2	ENST00000216797.5:c.467G>A	p.Cys156Tyr	p.C156Y	ENST00000216797	NM_020529.2	156	tGc/tAc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2135025	2135025	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	211	774	0	ENST00000219476.3:c.4567G>T	p.Glu1523Ter	p.E1523*	ENST00000219476	NM_000548.3	1523	Gag/Tag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492739	56492739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	124	471	0	ENST00000407977.2:c.200G>T	p.Gly67Val	p.G67V	ENST00000407977		67	gGt/gTt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395242	139395242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0048062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	287	976	0	ENST00000277541.6:c.5696A>G	p.Asn1899Ser	p.N1899S	ENST00000277541	NM_017617.3	1899	aAc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0048064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	37	296	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992414	72992414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62620235		P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	42	735	0	ENST00000268489.5:c.1631C>T	p.Ser544Leu	p.S544L	ENST00000268489	NM_006885.3	544	tCg/tTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481403	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	16	244	0	ENST00000288602.6:c.1405_1406delinsTC	p.Gly469Ser	p.G469S	ENST00000288602	NM_004333.4	469	GGa/TCa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467800	66467800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	21	221	0	ENST00000273854.3:c.469G>C	p.Glu157Gln	p.E157Q	ENST00000273854	NM_004439.5	157	Gag/Cag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66242716	66242716	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	16	216	0	ENST00000273854.3:c.1856G>T	p.Trp619Leu	p.W619L	ENST00000273854	NM_004439.5	619	tGg/tTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259862	16259862	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	19	410	0	ENST00000375759.3:c.7127A>G	p.Gln2376Arg	p.Q2376R	ENST00000375759	NM_015001.2	2376	cAg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574011	7574012	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CGAAGCGCTCACGCCCACGGATCTGCAGCAACAGAGGAGGGGGAGA			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	15	706	0	ENST00000269305.4:c.994-24_1015dup	p.Glu339ValfsTer13	p.E339Vfs*13	ENST00000269305	NM_001126112.2	339	gag/gTCTCCCCCTCCTCTGTTGCTGCAGATCCGTGGGCGTGAGCGCTTCGag																																																																														
NF1	4763	MSKCC	GRCh37	17	29546078	29546079	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	32	356	0	ENST00000358273.4:c.1583_1584delinsTT	p.Gly528Val	p.G528V	ENST00000358273	NM_001042492.2	528	gGG/gTT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10264980	10264980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	34	326	0	ENST00000340748.4:c.1960G>T	p.Gly654Cys	p.G654C	ENST00000340748		654	Ggc/Tgc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982461	25982461	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	20	226	0	ENST00000435504.4:c.829A>T	p.Ile277Phe	p.I277F	ENST00000435504		277	Att/Ttt																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169977798	169977798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	39	256	1	ENST00000295797.4:c.265G>T	p.Ala89Ser	p.A89S	ENST00000295797	NM_002740.5	89	Gcc/Tcc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729708	41729708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	28	532	0	ENST00000242208.4:c.821G>T	p.Gly274Val	p.G274V	ENST00000242208	NM_002192.2	274	gGa/gTa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513009	106513009	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	23	172	0	ENST00000359195.3:c.2023A>T	p.Ser675Cys	p.S675C	ENST00000359195	NM_002649.2	675	Agc/Tgc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981635	70981635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	27	890	0	ENST00000276594.2:c.461C>A	p.Pro154His	p.P154H	ENST00000276594	NM_024504.3	154	cCt/cAt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209735	98209735	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0048066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	41	656	0	ENST00000331920.6:c.3805-2A>C		p.X1269_splice	ENST00000331920	NM_000264.3	1269																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	136	588	3	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0048067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	58	302	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0048067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	32	147	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	57	315	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32819964	32819964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	259	710	0	ENST00000354258.4:c.946G>A	p.Val316Met	p.V316M	ENST00000354258	NM_000593.5	316	Gtg/Atg																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64288905	64288905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0048067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	99	454	0	ENST00000370651.3:c.301G>A	p.Ala101Thr	p.A101T	ENST00000370651	NM_003463.4	101	Gct/Act																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031619-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	615	597	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138478161	138478161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031619-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	130	249	0	ENST00000289153.2:c.25C>T	p.Pro9Ser	p.P9S	ENST00000289153	NM_006219.2	9	Cct/Tct																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591140	67591145	+	inframe_deletion	In_Frame_Del	DEL	ACCAAT	ACCAAT	-			P-0031619-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			204	20	173	0	ENST00000274335.5:c.1735_1740del	p.Gln579_Tyr580del	p.Q579_Y580del	ENST00000274335		578	gACCAATac/gac																																																																														
PREX2	80243	MSKCC	GRCh37	8	69136840	69136840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031619-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	88	266	1	ENST00000288368.4:c.4754G>A	p.Arg1585Gln	p.R1585Q	ENST00000288368	NM_024870.2	1585	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428201	49428201	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031619-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1359	274	640	0	ENST00000301067.7:c.10499del	p.Gly3500GlufsTer2	p.G3500Efs*2	ENST00000301067	NM_003482.3	3500	gGa/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434310	49434328	+	frameshift_variant	Frame_Shift_Del	DEL	GACTGGCAGGCACTCGGGA	GACTGGCAGGCACTCGGGA	-			P-0031619-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	725	717	0	ENST00000301067.7:c.7225_7243del	p.Ser2409LeufsTer11	p.S2409Lfs*11	ENST00000301067	NM_003482.3	2409	TCCCGAGTGCCTGCCAGTCct/ct																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031619-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			369	52	386	0	ENST00000401558.2:c.2246G>C	p.Arg749Pro	p.R749P	ENST00000401558	NM_003400.3	749	cGa/cCa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40828006	40828006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031619-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	63	342	0	ENST00000373198.4:c.2422G>C	p.Glu808Gln	p.E808Q	ENST00000373198	NM_133170.3	808	Gag/Cag																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515243	149515243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031619-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			540	420	615	0	ENST00000261799.4:c.239C>A	p.Thr80Asn	p.T80N	ENST00000261799	NM_002609.3	80	aCc/aAc																																																																														
MYC	4609	MSKCC	GRCh37	8	128750920	128750920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031619-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1897	1465	478	0	ENST00000377970.2:c.457T>A	p.Phe153Ile	p.F153I	ENST00000377970	NM_002467.4	153	Ttc/Atc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	118	260	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374244	138374244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	179	422	0	ENST00000289153.2:c.3200A>T	p.Asp1067Val	p.D1067V	ENST00000289153	NM_006219.2	1067	gAc/gTc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663004	227663004	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			716	269	724	0	ENST00000305123.5:c.451T>G	p.Tyr151Asp	p.Y151D	ENST00000305123	NM_005544.2	151	Tac/Gac																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417781	138417781	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	141	302	0	ENST00000289153.2:c.1738A>G	p.Ile580Val	p.I580V	ENST00000289153	NM_006219.2	580	Atc/Gtc																																																																														
MGA	23269	MSKCC	GRCh37	15	42058570	42058574	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGG	AGAGG	-			P-0032986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	75	181	0	ENST00000219905.7:c.8290_8294del	p.Arg2764GlyfsTer12	p.R2764Gfs*12	ENST00000219905	NM_001164273.1	2764	AGAGGg/g																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641626	23641626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	200	412	0	ENST00000261584.4:c.1849G>A	p.Glu617Lys	p.E617K	ENST00000261584	NM_024675.3	617	Gaa/Aaa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699401	47699401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	100	209	0	ENST00000347630.2:c.107G>C	p.Trp36Ser	p.W36S	ENST00000347630	NM_001007230.1	36	tGg/tCg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225360594	225360594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	89	172	0	ENST00000264414.4:c.1797G>T	p.Met599Ile	p.M599I	ENST00000264414	NM_003590.4	599	atG/atT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971168	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCGTGGAGCAG	GCGCCGTGGAGCAG	-			P-0032986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	240	606	0	ENST00000304494.5:c.190_203del	p.Leu64GlyfsTer51	p.L64Gfs*51	ENST00000304494	NM_000077.4	64	CTGCTCCACGGCGCg/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971168	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCGTGGAGCAG	GCGCCGTGGAGCAG	-			P-0032986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	240	606	0	ENST00000304494.5:c.190_203del	p.Leu64GlyfsTer51	p.L64Gfs*51	ENST00000304494	NM_000077.4	64	CTGCTCCACGGCGCg/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971169	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCGTGGAGCAGC	GCGCCGTGGAGCAGC	T			P-0032986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	240	606	0	ENST00000304494.5:c.189_203delinsA	p.Leu64GlyfsTer51	p.L64Gfs*51	ENST00000304494	NM_000077.4	63	ctGCTGCTCCACGGCGCg/ctAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	105	705	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112173600	112173600	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	54	304	0	ENST00000257430.4:c.2309C>G	p.Ser770Ter	p.S770*	ENST00000257430	NM_000038.5	770	tCa/tGa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162742000	162742000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	32	480	0	ENST00000367921.3:c.1691C>G	p.Thr564Ser	p.T564S	ENST00000367921	NM_006182.2	564	aCt/aGt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912140	114912141	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0046631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	54	565	0	ENST00000543371.1:c.1210_1211delinsT	p.Arg404Ter	p.R404*	ENST00000543371	NM_001198531.1	404	CGg/Tg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	82	260	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	85	324	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108129714	108129715	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0047795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	100	276	0	ENST00000278616.4:c.2380_2381del	p.Pro795LysfsTer2	p.P795Kfs*2	ENST00000278616	NM_000051.3	793	aAG/a																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442564	52442575	+	inframe_deletion	In_Frame_Del	DEL	TTCGCCGGGACC	TTCGCCGGGACC	-			P-0047795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	96	311	0	ENST00000460680.1:c.170_181del	p.Arg57_Lys61delinsGln	p.R57_K61delinsQ	ENST00000460680	NM_004656.3	57	cGGTCCCGGCGAAag/cag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	53	246	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367867	15367867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	79	890	1	ENST00000263377.2:c.1459G>A	p.Asp487Asn	p.D487N	ENST00000263377	NM_058243.2	487	Gac/Aac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912670	32912670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	67	354	0	ENST00000380152.3:c.4178C>T	p.Ala1393Val	p.A1393V	ENST00000380152		1393	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175349	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	70	168	0	ENST00000257430.4:c.4058_4059delAA	p.Glu1353ValfsTer21	p.E1353Vfs*21	ENST00000257430	NM_000038.5	1353	gAA/g																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575448	64575449	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	114	794	0	ENST00000337652.1:c.583_584delinsTT	p.Gly195Leu	p.G195L	ENST00000337652	NM_130803.2	195	GGg/TTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578243	7578243	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	331	631	0	ENST00000269305.4:c.606del	p.Val203TrpfsTer44	p.V203Wfs*44	ENST00000269305	NM_001126112.2	202	cgT/cg																																																																														
HGF	3082	MSKCC	GRCh37	7	81381475	81381475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	44	298	0	ENST00000222390.5:c.586G>T	p.Val196Leu	p.V196L	ENST00000222390	NM_000601.4	196	Gta/Tta																																																																														
AR	367	MSKCC	GRCh37	X	66931382	66931382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	29	299	0	ENST00000374690.3:c.2024T>C	p.Leu675Pro	p.L675P	ENST00000374690	NM_000044.3	675	cTg/cCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	180	329	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0047797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	108	405	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099023	27099023	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	157	467	0	ENST00000324856.7:c.3442del	p.Gln1148SerfsTer13	p.Q1148Sfs*13	ENST00000324856	NM_006015.4	1147	Ccc/cc																																																																														
APC	324	MSKCC	GRCh37	5	112163671	112163671	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	57	199	0	ENST00000257430.4:c.1594C>T	p.Gln532Ter	p.Q532*	ENST00000257430	NM_000038.5	532	Caa/Taa																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045641	26045641	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0047797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	61	224	0	ENST00000540144.1:c.3G>A	p.Met1?	p.M1?	ENST00000540144	NM_003531.2	1	atG/atA																																																																														
APC	324	MSKCC	GRCh37	5	112175957	112175958	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	G			P-0047797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	35	157	0	ENST00000257430.4:c.4666_4667delinsG	p.Thr1556ValfsTer9	p.T1556Vfs*9	ENST00000257430	NM_000038.5	1556	ACt/Gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	145	885	1	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860918	45860918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	321	840	0	ENST00000391945.4:c.1277C>T	p.Pro426Leu	p.P426L	ENST00000391945	NM_000400.3	426	cCg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916920	178916925	+	inframe_deletion	In_Frame_Del	DEL	GAACCA	GAACCA	-			P-0047804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	163	341	0	ENST00000263967.3:c.308_313delAACCAG	p.Glu103_Pro104del	p.E103_P104del	ENST00000263967	NM_006218.2	103	GAACCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577554	7577554	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	274	589	0	ENST00000269305.4:c.727del	p.Met243TrpfsTer4	p.M243Wfs*4	ENST00000269305	NM_001126112.2	243	Atg/tg																																																																														
EP300	2033	MSKCC	GRCh37	22	41566576	41566576	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	84	232	0	ENST00000263253.7:c.4452+1G>A		p.X1484_splice	ENST00000263253	NM_001429.3	1484																																																																															
RB1	5925	MSKCC	GRCh37	13	48919315	48919332	+	inframe_deletion	In_Frame_Del	DEL	ACTCTTCAGCAAATTGGA	ACTCTTCAGCAAATTGGA	-			P-0047804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	34	131	0	ENST00000267163.4:c.481_498del	p.Leu161_Glu166del	p.L161_E166del	ENST00000267163	NM_000321.2	160	gcACTCTTCAGCAAATTGGAa/gca																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30133126	30133178	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGCCAAGGTGAAGGATACACATCTCTCATGGCTTCCAGGGTGGACGCCCGCA	TGGCCAAGGTGAAGGATACACATCTCTCATGGCTTCCAGGGTGGACGCCCGCA	-			P-0047804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	93	297	0	ENST00000263025.4:c.320_353+19del		p.X107_splice	ENST00000263025	NM_002746.2	107																																																																															
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	156	507	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
CDH1	999	MSKCC	GRCh37	16	68844231	68844233	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0047805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	138	419	0	ENST00000261769.5:c.819_821del	p.Glu273_Gly274delinsAsp	p.E273_G274delinsD	ENST00000261769	NM_004360.3	273	gaAGGt/gat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16247364	16247364	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0047806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	75	177	0	ENST00000375759.3:c.1636-1G>A		p.X546_splice	ENST00000375759	NM_015001.2	546																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43749146	43749146	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	298	728	0	ENST00000382044.4:c.1660G>T	p.Glu554Ter	p.E554*	ENST00000382044	NM_001141980.1	554	Gaa/Taa																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538829	23538831	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0047806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	246	514	0	ENST00000380871.4:c.608_610del	p.Glu203del	p.E203del	ENST00000380871	NM_006167.3	203	gAGGcc/gcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047831-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	15	374	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0047831-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			717	17	797	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	269	519	0	ENST00000269305.4:c.583dupA	p.Ile195AsnfsTer14	p.I195Nfs*14	ENST00000269305	NM_001126112.2	195	atc/aAtc																																																																														
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	67	135	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665501	138665501	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	188	687	0	ENST00000330315.3:c.64C>G	p.Arg22Gly	p.R22G	ENST00000330315	NM_023067.3	22	Cgc/Ggc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163561	32163561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	80	617	0	ENST00000375023.3:c.5665C>G	p.Arg1889Gly	p.R1889G	ENST00000375023	NM_004557.3	1889	Cgg/Ggg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	93	253	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591105	67591106	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	44	175	0	ENST00000274335.5:c.1701dup	p.Pro568ThrfsTer34	p.P568Tfs*34	ENST00000274335		566	-/A																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444932	49444933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	27	478	0	ENST00000301067.7:c.2533dup	p.Arg845ProfsTer3	p.R845Pfs*3	ENST00000301067	NM_003482.3	845	cgg/cCgg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247515	123247515	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	93	339	0	ENST00000358487.5:c.1976A>T	p.Lys659Met	p.K659M	ENST00000358487	NM_000141.4	659	aAg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228979	36228979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	110	633	0	ENST00000222270.7:c.7759C>T	p.Arg2587Ter	p.R2587*	ENST00000222270	NM_014727.1	2587	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344554	118344554	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	21	256	0	ENST00000534358.1:c.2684del	p.Lys895ArgfsTer54	p.K895Rfs*54	ENST00000534358	NM_005933.3	894	Aaa/aa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942647	71942647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	48	501	0	ENST00000298229.2:c.1603G>A	p.Ala535Thr	p.A535T	ENST00000298229	NM_001567.3	535	Gcc/Acc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591031	67591033	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs1370788402		P-0047940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	14	120	0	ENST00000274335.5:c.1630_1632del	p.Arg544del	p.R544del	ENST00000274335		542	AGA/-																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609849	81609849	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	27	371	0	ENST00000298171.2:c.1447A>G	p.Asn483Asp	p.N483D	ENST00000298171	NM_000369.2	483	Aac/Gac																																																																														
REL	5966	MSKCC	GRCh37	2	61145729	61145729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	17	212	0	ENST00000295025.8:c.841C>T	p.Pro281Ser	p.P281S	ENST00000295025	NM_002908.2	281	Cca/Tca																																																																														
CD274	29126	MSKCC	GRCh37	9	5466809	5466809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	19	76	0	ENST00000381577.3:c.830C>A	p.Thr277Lys	p.T277K	ENST00000381577	NM_014143.3	277	aCa/aAa																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22008918	22008918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	48	627	0	ENST00000276925.6:c.35delG	p.Gly12AlafsTer15	p.G12Afs*15	ENST00000276925	NM_004936.3	12	gGc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	61	494	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794860	242794860	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	24	650	0	ENST00000334409.5:c.349G>C	p.Asp117His	p.D117H	ENST00000334409	NM_005018.2	117	Gac/Cac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	42	315	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796080	78796080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	58	445	0	ENST00000306801.3:c.970G>A	p.Ala324Thr	p.A324T	ENST00000306801	NM_020761.2	324	Gcg/Acg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	73	389	0	ENST00000263967.3:c.1625A>G	p.Glu542Gly	p.E542G	ENST00000263967	NM_006218.2	542	gAa/gGa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357514	89357514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	121	612	0	ENST00000301030.4:c.304C>A	p.Leu102Met	p.L102M	ENST00000301030	NM_001256183.1	102	Ctg/Atg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541623	187541626	+	frameshift_variant	Frame_Shift_Del	DEL	GAAG	GAAG	-			P-0047944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	84	212	0	ENST00000441802.2:c.6114_6117del	p.Phe2039IlefsTer12	p.F2039Ifs*12	ENST00000441802	NM_005245.3	2038	ccCTTC/cc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489599	40489619	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATGCTCTGGTTGGAAACCAA	GATGCTCTGGTTGGAAACCAA	-			P-0047944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	73	347	0	ENST00000264657.5:c.646-15_651del		p.X216_splice	ENST00000264657	NM_139276.2	216																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104712	193104712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	49	199	0	ENST00000367435.3:c.416G>A	p.Arg139Gln	p.R139Q	ENST00000367435	NM_024529.4	139	cGa/cAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	170	463	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	45	253	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	28	529	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	11	304	0	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29562981	29562981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	60	323	0	ENST00000358273.4:c.3916C>T	p.Arg1306Ter	p.R1306*	ENST00000358273	NM_001042492.2	1306	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	101	390	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021785	71021785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs112795301		P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	59	229	1	ENST00000318789.4:c.1573C>T	p.Arg525Ter	p.R525*	ENST00000318789	NM_032682.5	525	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106355	27106355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	121	446	0	ENST00000324856.7:c.5966G>A	p.Arg1989Gln	p.R1989Q	ENST00000324856	NM_006015.4	1989	cGa/cAa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845621	63845621	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	36	131	0	ENST00000279873.7:c.1360G>T	p.Glu454Ter	p.E454*	ENST00000279873	NM_032199.2	454	Gaa/Taa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	147	446	0	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55575594	55575594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs73137716		P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	50	230	0	ENST00000288135.5:c.1120G>A	p.Val374Ile	p.V374I	ENST00000288135	NM_000222.2	374	Gta/Ata																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	91	295	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	36	131	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539690	187539690	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	62	261	0	ENST00000441802.2:c.8050G>T	p.Glu2684Ter	p.E2684*	ENST00000441802	NM_005245.3	2684	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827580	72827580	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	147	470	0	ENST00000268489.5:c.9001G>T	p.Glu3001Ter	p.E3001*	ENST00000268489	NM_006885.3	3001	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178943780	178943780	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	44	178	0	ENST00000263967.3:c.2447T>G	p.Ile816Ser	p.I816S	ENST00000263967	NM_006218.2	816	aTt/aGt																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630476	90630476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	121	399	1	ENST00000330062.3:c.835G>A	p.Asp279Asn	p.D279N	ENST00000330062	NM_002168.2	279	Gac/Aac																																																																														
POLE	5426	MSKCC	GRCh37	12	133253151	133253151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	88	306	0	ENST00000320574.5:c.890C>T	p.Ser297Phe	p.S297F	ENST00000320574	NM_006231.2	297	tCc/tTc																																																																														
RARA	5914	MSKCC	GRCh37	17	38508177	38508177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749735817		P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	92	364	0	ENST00000254066.5:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000254066	NM_000964.3	162	cGa/cAa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716081	52716081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	176	679	0	ENST00000322088.6:c.646G>A	p.Glu216Lys	p.E216K	ENST00000322088	NM_014225.5	216	Gag/Aag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482181	87482181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	101	463	0	ENST00000277120.3:c.1468G>T	p.Asp490Tyr	p.D490Y	ENST00000277120		490	Gat/Tat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273905	10273905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	156	662	3	ENST00000330684.3:c.364G>A	p.Val122Ile	p.V122I	ENST00000330684	NM_001134407.1	122	Gtc/Atc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287809	33287809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150463674		P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	205	730	0	ENST00000374542.5:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000374542	NM_001141970.1	482	Gaa/Aaa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942524	17942524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	116	791	0	ENST00000458235.1:c.2764G>A	p.Asp922Asn	p.D922N	ENST00000458235	NM_000215.3	922	Gat/Aat																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143094807	143094807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	46	208	0	ENST00000262992.4:c.1337C>A	p.Ser446Tyr	p.S446Y	ENST00000262992	NM_001101669.1	446	tCt/tAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627849	187627849	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	122	458	0	ENST00000441802.2:c.3133G>T	p.Glu1045Ter	p.E1045*	ENST00000441802	NM_005245.3	1045	Gaa/Taa																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599975	28599975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	182	637	1	ENST00000253063.3:c.857G>A	p.Arg286His	p.R286H	ENST00000253063	NM_031459.4	286	cGc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272439	11272439	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	128	403	0	ENST00000361445.4:c.3491A>G	p.Asp1164Gly	p.D1164G	ENST00000361445	NM_004958.3	1164	gAc/gGc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432877	432877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	111	336	0	ENST00000399788.2:c.2039G>T	p.Arg680Ile	p.R680I	ENST00000399788	NM_001042603.1	680	aGa/aTa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636088	28636088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	142	482	0	ENST00000241453.7:c.284T>C	p.Val95Ala	p.V95A	ENST00000241453	NM_004119.2	95	gTc/gCc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590794	95590794	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	47	227	0	ENST00000343455.3:c.1115T>G	p.Phe372Cys	p.F372C	ENST00000343455	NM_177438.2	372	tTt/tGt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640277	3640277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	168	770	0	ENST00000294008.3:c.3362C>A	p.Ser1121Tyr	p.S1121Y	ENST00000294008	NM_032444.2	1121	tCt/tAt																																																																														
TOP1	7150	MSKCC	GRCh37	20	39729898	39729898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	77	383	0	ENST00000361337.2:c.1213C>T	p.Arg405Trp	p.R405W	ENST00000361337	NM_003286.2	405	Cgg/Tgg																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961315	54961315	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	110	369	0	ENST00000312783.6:c.317C>A	p.Pro106His	p.P106H	ENST00000312783	NM_198436.1	106	cCt/cAt																																																																														
MITF	4286	MSKCC	GRCh37	3	70005647	70005647	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	51	269	0	ENST00000352241.4:c.979G>T	p.Glu327Ter	p.E327*	ENST00000352241	NM_198159.2	327	Gaa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498478	89498478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	75	243	0	ENST00000336596.2:c.2450T>C	p.Val817Ala	p.V817A	ENST00000336596	NM_005233.5	817	gTg/gCg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1976662	1976662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	165	509	0	ENST00000382891.5:c.3445G>A	p.Glu1149Lys	p.E1149K	ENST00000382891	NM_133335.3	1149	Gag/Aag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146638	55146638	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	29	404	0	ENST00000257290.5:c.2312A>C	p.Lys771Thr	p.K771T	ENST00000257290	NM_006206.4	771	aAa/aCa																																																																														
FAM175A	0	MSKCC	GRCh37	4	84388642	84388642	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	60	304	0	ENST00000321945.7:c.646A>C	p.Asn216His	p.N216H	ENST00000321945	NM_139076.2	216	Aat/Cat																																																																														
TET2	54790	MSKCC	GRCh37	4	106162570	106162570	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	37	178	0	ENST00000380013.4:c.3484G>T	p.Glu1162Ter	p.E1162*	ENST00000380013	NM_001127208.2	1162	Gaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622173	117622173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	39	227	0	ENST00000368508.3:c.6697G>A	p.Ala2233Thr	p.A2233T	ENST00000368508	NM_002944.2	2233	Gca/Aca																																																																														
HGF	3082	MSKCC	GRCh37	7	81346626	81346626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	52	184	0	ENST00000222390.5:c.1327C>A	p.Pro443Thr	p.P443T	ENST00000222390	NM_000601.4	443	Cca/Aca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486198	8486198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	29	319	0	ENST00000356435.5:c.2619C>A	p.Phe873Leu	p.F873L	ENST00000356435		873	ttC/ttA																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772618	135772618	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	96	370	0	ENST00000298552.3:c.2928A>C	p.Lys976Asn	p.K976N	ENST00000298552	NM_001162426.1	976	aaA/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	146	294	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	214	398	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175548	112175548	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	89	245	0	ENST00000257430.4:c.4260delC	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1419	agC/ag																																																																														
REL	5966	MSKCC	GRCh37	2	61145732	61145732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	120	200	0	ENST00000295025.8:c.844G>A	p.Asp282Asn	p.D282N	ENST00000295025	NM_002908.2	282	Gat/Aat																																																																														
BRAF	673	MSKCC	GRCh37	7	140481423	140481423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	145	272	0	ENST00000288602.6:c.1385G>T	p.Arg462Ile	p.R462I	ENST00000288602	NM_004333.4	462	aGa/aTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	10	260	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	115	630	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0047977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	149	499	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637347	47637347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	59	588	0	ENST00000233146.2:c.481G>T	p.Val161Phe	p.V161F	ENST00000233146	NM_000251.2	161	Gtt/Ttt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55270011	55270243	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACAGCACCCAGCACAGCCCTGCTGCCCACCCTGCAGCCTGTGGCCCAGTAGCACCAGCACCCACCAGGGTGCAGACTCTCAGGCCTGCCCAACCTACTAATCAGAACCAGCATCTCAAGGAGATCTCGGGTGATTTTTGCAAACACTGAAGTTGGGGCAGCCCTGACCGGAGTAACCTTCCCTCATTTCCTCCTGCAGCTGCAAAGCTGTCCCATCAAGGAAGACAGCTTCT	TACAGCACCCAGCACAGCCCTGCTGCCCACCCTGCAGCCTGTGGCCCAGTAGCACCAGCACCCACCAGGGTGCAGACTCTCAGGCCTGCCCAACCTACTAATCAGAACCAGCATCTCAAGGAGATCTCGGGTGATTTTTGCAAACACTGAAGTTGGGGCAGCCCTGACCGGAGTAACCTTCCCTCATTTCCTCCTGCAGCTGCAAAGCTGTCCCATCAAGGAAGACAGCTTCT	-			P-0047977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	127	532	0	ENST00000275493.2:c.3163-198_3197del		p.X1055_splice	ENST00000275493	NM_005228.3	1055																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041316	47041351	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAATAGTGTGACCCCGTTCCCCTCACCCCCTAGCT	GGAATAGTGTGACCCCGTTCCCCTCACCCCCTAGCT	CG			P-0047977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	51	333	2	ENST00000329236.7:c.1460-34_1461delinsCG		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	101	650	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	63	634	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	124	401	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	25	332	0	ENST00000342988.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000342988	NM_005359.5	352	gGa/gTa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117900	70117900	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	98	569	0	ENST00000245479.2:c.368T>A	p.Leu123His	p.L123H	ENST00000245479	NM_000346.3	123	cTc/cAc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976510	25976510	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	19	201	1	ENST00000435504.4:c.1037-2A>G		p.X346_splice	ENST00000435504		346																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25991627	25991628	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	40	249	0	ENST00000435504.4:c.614_615del	p.Ser205CysfsTer14	p.S205Cfs*14	ENST00000435504		205	tCT/t																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151856071	151856071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	31	327	0	ENST00000262189.6:c.11547G>T	p.Gln3849His	p.Q3849H	ENST00000262189	NM_170606.2	3849	caG/caT																																																																														
NF1	4763	MSKCC	GRCh37	17	29486027	29486027	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0048007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	20	149	0	ENST00000358273.4:c.205-1G>C		p.X69_splice	ENST00000358273	NM_001042492.2	69																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502423	186502423	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0048007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	30	328	0	ENST00000323963.5:c.146A>G	p.Tyr49Cys	p.Y49C	ENST00000323963		49	tAt/tGt																																																																														
FANCC	2176	MSKCC	GRCh37	9	97864090	97864090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0048007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	101	508	0	ENST00000289081.3:c.1576C>A	p.Leu526Ile	p.L526I	ENST00000289081	NM_000136.2	526	Ctt/Att																																																																														
MED12	9968	MSKCC	GRCh37	X	70354295	70354295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0048007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	165	955	0	ENST00000374080.3:c.4706C>T	p.Thr1569Ile	p.T1569I	ENST00000374080		1569	aCt/aTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76888694	76888694	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0048007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	83	293	0	ENST00000373344.5:c.5134+1G>T		p.X1712_splice	ENST00000373344	NM_000489.3	1712																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	23	630	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	225	570	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	289	619	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149513482	149513482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	197	490	0	ENST00000261799.4:c.721G>A	p.Glu241Lys	p.E241K	ENST00000261799	NM_002609.3	241	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250867	153250867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	85	269	0	ENST00000281708.4:c.1193C>T	p.Ser398Phe	p.S398F	ENST00000281708	NM_033632.3	398	tCt/tTt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935641	49935641	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191131637		P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	245	528	0	ENST00000296474.3:c.1723C>T	p.His575Tyr	p.H575Y	ENST00000296474	NM_002447.2	575	Cac/Tac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	312	729	0	ENST00000269571.5:c.2329G>A	p.Val777Met	p.V777M	ENST00000269571		777	Gtg/Atg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80646085	80646085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	89	162	0	ENST00000286548.4:c.67G>A	p.Asp23Asn	p.D23N	ENST00000286548	NM_002072.3	23	Gac/Aac																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564773	86564773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	244	594	0	ENST00000274376.6:c.505G>A	p.Val169Met	p.V169M	ENST00000274376	NM_002890.2	169	Gtg/Atg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	293	630	0	ENST00000269571.5:c.829G>A	p.Asp277Asn	p.D277N	ENST00000269571		277	Gac/Aac																																																																														
AR	367	MSKCC	GRCh37	X	66765229	66765229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	107	191	0	ENST00000374690.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000374690	NM_000044.3	81	Gag/Aag																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878910	117878910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	150	296	0	ENST00000297338.2:c.59C>T	p.Ala20Val	p.A20V	ENST00000297338	NM_006265.2	20	gCg/gTg																																																																														
XIAP	331	MSKCC	GRCh37	X	123019961	123019961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	235	251	1	ENST00000355640.3:c.449C>T	p.Ser150Leu	p.S150L	ENST00000355640		150	tCa/tTa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742483	17742483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	251	657	1	ENST00000250003.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000250003	NM_002478.4	222	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	77	347	0	ENST00000281708.4:c.1268G>A	p.Gly423Glu	p.G423E	ENST00000281708	NM_033632.3	423	gGa/gAa																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885161	111885161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	435	554	0	ENST00000341259.2:c.1049C>T	p.Pro350Leu	p.P350L	ENST00000341259	NM_005475.2	350	cCg/cTg																																																																														
ALK	238	MSKCC	GRCh37	2	29754908	29754908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	189	406	0	ENST00000389048.3:c.1027G>A	p.Glu343Lys	p.E343K	ENST00000389048	NM_004304.4	343	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777742	3777742	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	348	730	0	ENST00000262367.5:c.7306G>C	p.Glu2436Gln	p.E2436Q	ENST00000262367	NM_004380.2	2436	Gag/Cag																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082749	16082749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	49	113	0	ENST00000281043.3:c.563A>C	p.Asp188Ala	p.D188A	ENST00000281043	NM_005378.4	188	gAt/gCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105782	27105782	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	147	312	0	ENST00000324856.7:c.5393C>A	p.Ser1798Ter	p.S1798*	ENST00000324856	NM_006015.4	1798	tCa/tAa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742868	17742880	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCCACCGAGAG	TCTCCACCGAGAG	-			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	246	784	0	ENST00000250003.3:c.776_788del	p.Ile259ThrfsTer73	p.I259Tfs*73	ENST00000250003	NM_002478.4	259	aTCTCCACCGAGAGc/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378630	25378630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	105	274	0	ENST00000256078.4:c.368G>A	p.Arg123Lys	p.R123K	ENST00000256078	NM_033360.2	123	aGa/aAa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959381	26959382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	128	259	0	ENST00000381527.3:c.551dup	p.Leu184PhefsTer20	p.L184Ffs*20	ENST00000381527	NM_001260.1	183	cct/ccTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28931780	28931780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	76	314	0	ENST00000282397.4:c.2159G>A	p.Arg720Lys	p.R720K	ENST00000282397	NM_002019.4	720	aGa/aAa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643466	38643466	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	102	356	0	ENST00000299084.4:c.936G>C	p.Lys312Asn	p.K312N	ENST00000299084	NM_152594.2	312	aaG/aaC																																																																														
BLM	641	MSKCC	GRCh37	15	91303920	91303920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	105	388	1	ENST00000355112.3:c.1317G>A	p.Met439Ile	p.M439I	ENST00000355112	NM_000057.2	439	atG/atA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3824629	3824629	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	193	467	0	ENST00000262367.5:c.2224C>G	p.Arg742Gly	p.R742G	ENST00000262367	NM_004380.2	742	Cgt/Ggt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004925	16004925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	281	512	0	ENST00000268712.3:c.2329G>A	p.Asp777Asn	p.D777N	ENST00000268712	NM_006311.3	777	Gat/Aat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11135006	11135006	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs10401806		P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	193	471	0	ENST00000344626.4:c.2974-1G>A		p.X992_splice	ENST00000344626	NM_003072.3	992																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14629108	14629108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	92	432	0	ENST00000254322.2:c.54G>T	p.Glu18Asp	p.E18D	ENST00000254322	NM_006145.1	18	gaG/gaT																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872375	45872375	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	295	609	0	ENST00000391945.4:c.136A>T	p.Thr46Ser	p.T46S	ENST00000391945	NM_000400.3	46	Acc/Tcc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61708412	61708412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	84	183	0	ENST00000401558.2:c.2977C>A	p.Gln993Lys	p.Q993K	ENST00000401558	NM_003400.3	993	Caa/Aaa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728693	190728693	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	67	222	0	ENST00000441310.2:c.2081T>G	p.Ile694Ser	p.I694S	ENST00000441310	NM_000534.4	694	aTt/aGt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495226	212495226	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	103	317	0	ENST00000342788.4:c.2040C>G	p.Ile680Met	p.I680M	ENST00000342788	NM_005235.2	680	atC/atG																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794896	242794896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	299	719	0	ENST00000334409.5:c.313G>A	p.Asp105Asn	p.D105N	ENST00000334409	NM_005018.2	105	Gac/Aac																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180454	38180454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	260	601	2	ENST00000396334.3:c.302G>A	p.Arg101Gln	p.R101Q	ENST00000396334	NM_002468.4	101	cGa/cAa																																																																														
RYBP	23429	MSKCC	GRCh37	3	72428401	72428401	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	135	390	0	ENST00000477973.2:c.600+1G>A		p.X200_splice	ENST00000477973	NM_012234.5	200																																																																															
BCL6	604	MSKCC	GRCh37	3	187444642	187444642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	210	457	0	ENST00000232014.4:c.1585G>A	p.Glu529Lys	p.E529K	ENST00000232014	NM_001130845.1	529	Gag/Aag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467626	66467626	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	102	211	0	ENST00000273854.3:c.643C>G	p.Gln215Glu	p.Q215E	ENST00000273854	NM_004439.5	215	Caa/Gaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540036	187540037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	124	307	0	ENST00000441802.2:c.7702_7703dup	p.Leu2568PhefsTer2	p.L2568Ffs*2	ENST00000441802	NM_005245.3	2568	tta/ttTTa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950244	38950244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	124	337	0	ENST00000357387.3:c.3706C>T	p.Pro1236Ser	p.P1236S	ENST00000357387	NM_152756.3	1236	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112162907	112162907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	94	283	0	ENST00000257430.4:c.1511C>T	p.Ala504Val	p.A504V	ENST00000257430	NM_000038.5	504	gCt/gTt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149433930	149433930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	293	705	0	ENST00000286301.3:c.2718C>G	p.Ile906Met	p.I906M	ENST00000286301	NM_005211.3	906	atC/atG																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149513518	149513518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	212	486	0	ENST00000261799.4:c.685G>A	p.Glu229Lys	p.E229K	ENST00000261799	NM_002609.3	229	Gag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176563006	176563006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	117	239	0	ENST00000439151.2:c.902C>T	p.Ser301Leu	p.S301L	ENST00000439151	NM_022455.4	301	tCa/tTa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138198228	138198228	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	59	153	0	ENST00000237289.4:c.821C>G	p.Pro274Arg	p.P274R	ENST00000237289	NM_001270507.1	274	cCa/cGa																																																																														
HGF	3082	MSKCC	GRCh37	7	81335714	81335714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	83	217	0	ENST00000222390.5:c.1646G>C	p.Gly549Ala	p.G549A	ENST00000222390	NM_000601.4	549	gGa/gCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859557	151859557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	135	352	0	ENST00000262189.6:c.11105C>T	p.Ser3702Leu	p.S3702L	ENST00000262189	NM_170606.2	3702	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295166	1295168	+	upstream_gene_variant	5'Flank	ONP	CTC	CTC	ATG			P-0047715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	103	299	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	377	413	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004331	150004331	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	186	259	0	ENST00000253339.5:c.1894C>T	p.Gln632Ter	p.Q632*	ENST00000253339		632	Caa/Taa																																																																														
RET	5979	MSKCC	GRCh37	10	43620411	43620411	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	134	337	0	ENST00000355710.3:c.3020A>T	p.Lys1007Met	p.K1007M	ENST00000355710	NM_020975.4	1007	aAg/aTg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794476	242794476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	216	592	0	ENST00000334409.5:c.466C>A	p.Pro156Thr	p.P156T	ENST00000334409	NM_005018.2	156	Ccc/Acc																																																																														
PIM1	5292	MSKCC	GRCh37	6	37138785	37138785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3509	566	403	1	ENST00000373509.5:c.218G>T	p.Arg73Leu	p.R73L	ENST00000373509	NM_002648.3	73	cGg/cTg																																																																														
PIM1	5292	MSKCC	GRCh37	6	37139042	37139042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4388	692	498	0	ENST00000373509.5:c.382G>T	p.Asp128Tyr	p.D128Y	ENST00000373509	NM_002648.3	128	Gat/Tat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0047474-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	75	561	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047474-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	124	767	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047474-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	45	250	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073950	8073950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047474-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	47	380	0	ENST00000377482.5:c.709C>A	p.Pro237Thr	p.P237T	ENST00000377482	NM_018948.3	237	Cct/Act																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902725	1902725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047474-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	50	581	0	ENST00000382891.5:c.347del	p.Pro116LeufsTer11	p.P116Lfs*11	ENST00000382891	NM_133335.3	115	aCc/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	36	743	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0047783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	30	393	0				ENST00000310581	NM_198253.2																																																																																
JAK3	3718	MSKCC	GRCh37	19	17950352	17950352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	25	862	0	ENST00000458235.1:c.1375G>A	p.Asp459Asn	p.D459N	ENST00000458235	NM_000215.3	459	Gat/Aat																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671265	30671265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	18	579	0	ENST00000376406.3:c.5612A>G	p.Glu1871Gly	p.E1871G	ENST00000376406	NM_014641.2	1871	gAg/gGg																																																																														
MED12	9968	MSKCC	GRCh37	X	70340991	70340991	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	23	290	0	ENST00000374080.3:c.724T>C	p.Phe242Leu	p.F242L	ENST00000374080		242	Ttc/Ctc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	615	532	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	48947596	48947596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	94	277	0	ENST00000267163.4:c.1183C>T	p.Gln395Ter	p.Q395*	ENST00000267163	NM_000321.2	395	Caa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86681129	86681129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	17	219	0	ENST00000274376.6:c.2770C>T	p.Pro924Ser	p.P924S	ENST00000274376	NM_002890.2	924	Cct/Tct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836768	151836768	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	162	362	0	ENST00000262189.6:c.14452G>T	p.Glu4818Ter	p.E4818*	ENST00000262189	NM_170606.2	4818	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	202	649	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109672	115109672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			855	57	802	0	ENST00000257566.3:c.2206G>C	p.Asp736His	p.D736H	ENST00000257566	NM_016569.3	736	Gac/Cac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			725	1116	684	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	9	276	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
NPM1	4869	MSKCC	GRCh37	5	170827844	170827844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			126	16	139	0	ENST00000296930.5:c.584C>T	p.Ser195Phe	p.S195F	ENST00000296930	NM_002520.6	195	tCt/tTt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075591	8075591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	45	464	0	ENST00000377482.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000377482	NM_018948.3	30	aGg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295181	1295181	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	49	164	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295411	1295411	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			85	27	83	0				ENST00000310581	NM_198253.2																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149459615	149459615	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	64	599	0	ENST00000286301.3:c.592G>A	p.Val198Ile	p.V198I	ENST00000286301	NM_005211.3	198	Gtc/Atc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	74	255	1				ENST00000310581	NM_198253.2																																																																																
EZH1	2145	MSKCC	GRCh37	17	40872313	40872313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	100	582	0	ENST00000428826.2:c.642G>C	p.Lys214Asn	p.K214N	ENST00000428826		214	aaG/aaC																																																																														
TET1	80312	MSKCC	GRCh37	10	70432683	70432683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	48	465	0	ENST00000373644.4:c.4705G>C	p.Glu1569Gln	p.E1569Q	ENST00000373644	NM_030625.2	1569	Gag/Cag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343051	118343051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	68	266	0	ENST00000534358.1:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000534358	NM_005933.3	393	Cag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16022782	16022782	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	59	330	0	ENST00000268712.3:c.1870G>T	p.Glu624Ter	p.E624*	ENST00000268712	NM_006311.3	624	Gag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024405	16024405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	76	473	0	ENST00000268712.3:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000268712	NM_006311.3	605	Gaa/Aaa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029454	16029454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	64	378	0	ENST00000268712.3:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000268712	NM_006311.3	526	Gaa/Caa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927486	178927486	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	13	348	1	ENST00000263967.3:c.1249G>A	p.Glu417Lys	p.E417K	ENST00000263967	NM_006218.2	417	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112154981	112154981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	179	603	0	ENST00000257430.4:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000257430	NM_000038.5	418	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112177392	112177422	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAAGATGACCTGTTGCAGGAATGTATAAG	CTGAAGATGACCTGTTGCAGGAATGTATAAG	-			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	65	278	0	ENST00000257430.4:c.6103_6133del	p.Glu2035ProfsTer28	p.E2035Pfs*28	ENST00000257430	NM_000038.5	2034	tCTGAAGATGACCTGTTGCAGGAATGTATAAGc/tc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149513482	149513482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	34	690	0	ENST00000261799.4:c.721G>C	p.Glu241Gln	p.E241Q	ENST00000261799	NM_002609.3	241	Gag/Cag																																																																														
MET	4233	MSKCC	GRCh37	7	116418886	116418886	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	57	333	0	ENST00000397752.3:c.3397G>C	p.Asp1133His	p.D1133H	ENST00000397752	NM_000245.2	1133	Gat/Cat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966749	44966749	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	130	274	1	ENST00000377967.4:c.3973G>T	p.Glu1325Ter	p.E1325*	ENST00000377967	NM_021140.2	1325	Gaa/Taa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179121	123179121	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			160	78	238	0	ENST00000218089.9:c.570C>G	p.Ile190Met	p.I190M	ENST00000218089	NM_001042749.1	190	atC/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0047576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	86	711	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739324	46739325	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0047576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	53	491	0	ENST00000371975.4:c.1517_1518dup	p.Val507ArgfsTer2	p.V507Rfs*2	ENST00000371975	NM_003579.3	505	-/GC																																																																														
TSC2	7249	MSKCC	GRCh37	16	2104385	2104480	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCAAGGCCCTCACAGACAATGGGAGACACATCACCTACTTGGAGGAAGAGCTGGGTGGGTGCCACCTTGGGTTGGAGGTTTCTCTGGCCTTGA	TTTTCAAGGCCCTCACAGACAATGGGAGACACATCACCTACTTGGAGGAAGAGCTGGGTGGGTGCCACCTTGGGTTGGAGGTTTCTCTGGCCTTGA	-			P-0047576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	39	822	0	ENST00000219476.3:c.425_481+39del		p.X142_splice	ENST00000219476	NM_000548.3	142																																																																															
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0047877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	28	555	0	ENST00000269305.4:c.920-2A>C		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
LATS1	9113	MSKCC	GRCh37	6	150004945	150004945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	15	319	0	ENST00000253339.5:c.1280C>G	p.Pro427Arg	p.P427R	ENST00000253339		427	cCt/cGt																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872400	35872400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	19	668	0	ENST00000216797.5:c.503C>T	p.Thr168Ile	p.T168I	ENST00000216797	NM_020529.2	168	aCc/aTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243920	41243920	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	35	492	1	ENST00000357654.3:c.3628G>T	p.Glu1210Ter	p.E1210*	ENST00000357654	NM_007294.3	1210	Gag/Tag																																																																														
INSR	3643	MSKCC	GRCh37	19	7142984	7142984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	17	629	0	ENST00000302850.5:c.2385C>A	p.His795Gln	p.H795Q	ENST00000302850	NM_000208.2	795	caC/caA																																																																														
CALR	811	MSKCC	GRCh37	19	13054702	13054702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	35	368	0	ENST00000316448.5:c.1229C>T	p.Pro410Leu	p.P410L	ENST00000316448	NM_004343.3	410	cCc/cTc																																																																														
AXL	558	MSKCC	GRCh37	19	41736880	41736901	+	frameshift_variant	Frame_Shift_Del	DEL	AAGACATCCTCTTTCTCCTGCG	AAGACATCCTCTTTCTCCTGCG	-			P-0047877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	32	619	0	ENST00000301178.4:c.598_619del	p.Thr200ProfsTer43	p.T200Pfs*43	ENST00000301178	NM_021913.4	199	AAGACATCCTCTTTCTCCTGCGaa/aa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62317164	62317165	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGTCACCGGAGGACGGCTCAGCGGTCTGATGCC			P-0047877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	39	814	0	ENST00000508582.2:c.1360_1392dup	p.Gly454_Ala464dup	p.G454_A464dup	ENST00000508582		454	-/GGTCACCGGAGGACGGCTCAGCGGTCTGATGCC																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004919	150004920	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	17	324	0	ENST00000253339.5:c.1305dup	p.Ser436ValfsTer15	p.S436Vfs*15	ENST00000253339		435	-/G																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242433	55242433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	23	340	0	ENST00000275493.2:c.2203G>C	p.Gly735Arg	p.G735R	ENST00000275493	NM_005228.3	735	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974730	21974731	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0047877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	34	412	1	ENST00000304494.5:c.96_97delinsAT	p.Glu33Ter	p.E33*	ENST00000304494	NM_000077.4	32	ctGGag/ctATag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974730	21974731	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0047877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	34	412	1	ENST00000304494.5:c.96_97delinsAT	p.Glu33Ter	p.E33*	ENST00000304494	NM_000077.4	32	ctGGag/ctATag																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	52	191	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100998	41100998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	24	538	0	ENST00000373198.4:c.1358G>A	p.Arg453His	p.R453H	ENST00000373198	NM_133170.3	453	cGc/cAc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061028	38061028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	143	300	0	ENST00000250448.2:c.961G>C	p.Glu321Gln	p.E321Q	ENST00000250448	NM_004496.3	321	Gag/Cag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591147	67591148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	49	183	0	ENST00000274335.5:c.1742dup	p.Leu581PhefsTer21	p.L581Ffs*21	ENST00000274335		580	-/T																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	64	607	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225339072	225339072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	38	249	0	ENST00000264414.4:c.2197C>T	p.Arg733Ter	p.R733*	ENST00000264414	NM_003590.4	733	Cga/Tga																																																																														
PARP1	142	MSKCC	GRCh37	1	226552821	226552821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182639036		P-0047879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	18	483	0	ENST00000366794.5:c.2540G>A	p.Arg847His	p.R847H	ENST00000366794	NM_001618.3	847	cGt/cAt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310913	123310913	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	13	542	0	ENST00000358487.5:c.515C>A	p.Ala172Asp	p.A172D	ENST00000358487	NM_000141.4	172	gCc/gAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545650	106545650	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	33	366	0	ENST00000359195.3:c.3127A>C	p.Thr1043Pro	p.T1043P	ENST00000359195	NM_002649.2	1043	Aca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	36	556	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	36	572	0	ENST00000269305.4:c.766A>C	p.Thr256Pro	p.T256P	ENST00000269305	NM_001126112.2	256	Aca/Cca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	18	452	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714218	43714218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	54	718	0	ENST00000382044.4:c.3935C>G	p.Ser1312Cys	p.S1312C	ENST00000382044	NM_001141980.1	1312	tCc/tGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845262	151845262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	132	408	0	ENST00000262189.6:c.13750C>T	p.Arg4584Trp	p.R4584W	ENST00000262189	NM_170606.2	4584	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	19	393	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	15	320	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323193	31323193	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	63	724	0	ENST00000412585.2:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000412585	NM_005514.6	266	Cag/Tag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858615	57858615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	73	643	0	ENST00000228682.2:c.353G>T	p.Gly118Val	p.G118V	ENST00000228682	NM_005269.2	118	gGa/gTa																																																																														
POLE	5426	MSKCC	GRCh37	12	133219902	133219902	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	62	733	0	ENST00000320574.5:c.4459A>G	p.Ile1487Val	p.I1487V	ENST00000320574	NM_006231.2	1487	Atc/Gtc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347746	347746	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	71	949	1	ENST00000262320.3:c.1760A>T	p.Asn587Ile	p.N587I	ENST00000262320	NM_003502.3	587	aAc/aTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819300	3819300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	79	688	0	ENST00000262367.5:c.2935G>T	p.Ala979Ser	p.A979S	ENST00000262367	NM_004380.2	979	Gcc/Tcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211894	36211894	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	85	903	0	ENST00000222270.7:c.1645G>T	p.Glu549Ter	p.E549*	ENST00000222270	NM_014727.1	549	Gaa/Taa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928652	49928652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	76	829	0	ENST00000296474.3:c.3622G>C	p.Asp1208His	p.D1208H	ENST00000296474	NM_002447.2	1208	Gac/Cac																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508080	106508080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	25	287	0	ENST00000359195.3:c.74C>T	p.Pro25Leu	p.P25L	ENST00000359195	NM_002649.2	25	cCg/cTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68999959	68999959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	18	480	3	ENST00000288368.4:c.2028G>T	p.Glu676Asp	p.E676D	ENST00000288368	NM_024870.2	676	gaG/gaT																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300960	137300960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	65	732	0	ENST00000481739.1:c.605G>T	p.Arg202Leu	p.R202L	ENST00000481739	NM_002957.4	202	cGg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	94	471	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631275	117631275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	75	404	0	ENST00000368508.3:c.6403G>A	p.Asp2135Asn	p.D2135N	ENST00000368508	NM_002944.2	2135	Gat/Aat																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941125	36941125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	216	560	0	ENST00000361632.4:c.214G>A	p.Gly72Arg	p.G72R	ENST00000361632		72	Ggg/Agg																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	148	304	7	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843626	156843626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	65	606	0	ENST00000524377.1:c.1052C>A	p.Pro351His	p.P351H	ENST00000524377	NM_002529.3	351	cCc/cAc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745569	162745569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	100	402	0	ENST00000367921.3:c.1984C>A	p.Leu662Ile	p.L662I	ENST00000367921	NM_006182.2	662	Ctc/Atc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111171	193111171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	83	238	0	ENST00000367435.3:c.704C>T	p.Thr235Ile	p.T235I	ENST00000367435	NM_024529.4	235	aCa/aTa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983031	201983031	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	194	518	0	ENST00000359651.3:c.881del	p.Lys294SerfsTer31	p.K294Sfs*31	ENST00000359651		294	Aag/ag																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716118	243716118	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	42	414	0	ENST00000263826.5:c.1076T>C	p.Leu359Ser	p.L359S	ENST00000263826	NM_005465.4	359	tTa/tCa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	142	331	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
HRAS	3265	MSKCC	GRCh37	11	533536	533536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	248	629	0	ENST00000311189.7:c.367C>T	p.Arg123Cys	p.R123C	ENST00000311189		123	Cgc/Tgc																																																																														
CCND1	595	MSKCC	GRCh37	11	69462801	69462801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	155	516	1	ENST00000227507.2:c.614C>T	p.Ala205Val	p.A205V	ENST00000227507	NM_053056.2	205	gCg/gTg																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514265	69514265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	161	573	0	ENST00000294312.3:c.416A>G	p.His139Arg	p.H139R	ENST00000294312	NM_005117.2	139	cAc/cGc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	150	461	5	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	29	301	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	104	298	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434005	49434005	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	256	704	0	ENST00000301067.7:c.7548del	p.Asn2517IlefsTer26	p.N2517Ifs*26	ENST00000301067	NM_003482.3	2516	ccC/cc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856521	111856521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	149	279	0	ENST00000341259.2:c.572C>T	p.Pro191Leu	p.P191L	ENST00000341259	NM_005475.2	191	cCg/cTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562397	21562397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	45	558	0	ENST00000382592.4:c.1522G>T	p.Gly508Cys	p.G508C	ENST00000382592	NM_014572.2	508	Ggc/Tgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	16	254	0	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954272	32954273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs886038189		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	88	313	0	ENST00000380152.3:c.9253dup	p.Thr3085AsnfsTer26	p.T3085Nfs*26	ENST00000380152		3082	-/A																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514050	103514050	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	51	248	0	ENST00000355739.4:c.866A>G	p.Tyr289Cys	p.Y289C	ENST00000355739	NM_000123.3	289	tAc/tGc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435597	110435597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	165	331	0	ENST00000375856.3:c.2804C>T	p.Ala935Val	p.A935V	ENST00000375856	NM_003749.2	935	gCg/gTg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	25	412	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2224294	2224294	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	160	671	0	ENST00000326181.6:c.1306G>T	p.Glu436Ter	p.E436*	ENST00000326181	NM_032271.2	436	Gag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781324	3781326	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	295	730	0	ENST00000262367.5:c.5039_5041delCCT	p.Ser1680del	p.S1680del	ENST00000262367	NM_004380.2	1680	tCCTtg/ttg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50788275	50788275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	133	440	0	ENST00000398568.2:c.853C>T	p.Leu285Phe	p.L285F	ENST00000398568	NM_001042412.1	285	Ctt/Ttt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	94	435	1	ENST00000268489.5:c.2287dupG	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89809209	89809209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	175	384	0	ENST00000389301.3:c.3764A>T	p.Glu1255Val	p.E1255V	ENST00000389301	NM_000135.2	1255	gAg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	254	599	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	124	473	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
NF1	4763	MSKCC	GRCh37	17	29541593	29541593	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	17	203	0	ENST00000358273.4:c.1517T>G	p.Leu506Arg	p.L506R	ENST00000358273	NM_001042492.2	506	cTc/cGc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	238	600	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63531841	63531841	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	133	388	0	ENST00000307078.5:c.2142-2A>G		p.X714_splice	ENST00000307078	NM_004655.3	714																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78899179	78899179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	106	369	0	ENST00000306801.3:c.2818G>A	p.Asp940Asn	p.D940N	ENST00000306801	NM_020761.2	940	Gac/Aac																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78934001	78934001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	181	484	0	ENST00000306801.3:c.3601G>A	p.Glu1201Lys	p.E1201K	ENST00000306801	NM_020761.2	1201	Gaa/Aaa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	171	531	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276289	15276289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	224	614	0	ENST00000263388.2:c.5705G>A	p.Arg1902His	p.R1902H	ENST00000263388	NM_000435.2	1902	cGc/cAc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273010	18273010	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	59	469	0	ENST00000222254.8:c.902-2A>G		p.X301_splice	ENST00000222254	NM_005027.3	301																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221698	36221698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	195	642	0	ENST00000222270.7:c.5367G>T	p.Arg1789Ser	p.R1789S	ENST00000222270	NM_014727.1	1789	agG/agT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	152	691	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
AXL	558	MSKCC	GRCh37	19	41762509	41762509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	40	300	0	ENST00000301178.4:c.2189G>A	p.Ser730Asn	p.S730N	ENST00000301178	NM_021913.4	730	aGc/aAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42793480	42793480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	50	547	0	ENST00000575354.2:c.1282C>T	p.Arg428Cys	p.R428C	ENST00000575354	NM_015125.3	428	Cgt/Tgt																																																																														
CIC	23152	MSKCC	GRCh37	19	42795712	42795715	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	273	637	0	ENST00000575354.2:c.2705_2708del	p.Ser902PhefsTer21	p.S902Ffs*21	ENST00000575354	NM_015125.3	901	CAGTca/ca																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902258	50902263	+	inframe_deletion	In_Frame_Del	DEL	GCAGGA	GCAGGA	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	106	632	0	ENST00000440232.2:c.157_162del	p.Gln53_Glu54del	p.Q53_E54del	ENST00000440232	NM_002691.3	50	ctGCAGGAg/ctg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910268	50910268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	144	528	0	ENST00000440232.2:c.1523T>C	p.Leu508Pro	p.L508P	ENST00000440232	NM_002691.3	508	cTg/cCg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190738224	190738224	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	36	109	0	ENST00000441310.2:c.2476G>A	p.Val826Ile	p.V826I	ENST00000441310	NM_000534.4	826	Gtt/Att																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713861	30713861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	216	481	0	ENST00000359013.4:c.1261T>C	p.Cys421Arg	p.C421R	ENST00000359013	NM_001024847.2	421	Tgt/Cgt																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182341	38182341	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	70	324	0	ENST00000396334.3:c.775+2T>C		p.X259_splice	ENST00000396334	NM_002468.4	259																																																																															
MITF	4286	MSKCC	GRCh37	3	69987137	69987137	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	146	430	0	ENST00000352241.4:c.522del	p.Ser175AlafsTer38	p.S175Afs*38	ENST00000352241	NM_198159.2	173	ccG/cc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	134	438	3	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	59	228	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	54	226	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																														
TET2	54790	MSKCC	GRCh37	4	106156652	106156652	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	26	266	1	ENST00000380013.4:c.1557delT	p.Phe519LeufsTer14	p.F519Lfs*14	ENST00000380013	NM_001127208.2	518	aTt/at																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	77	200	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541228	187541228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	68	302	0	ENST00000441802.2:c.6512C>T	p.Pro2171Leu	p.P2171L	ENST00000441802	NM_005245.3	2171	cCg/cTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630629	187630629	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	171	432	1	ENST00000441802.2:c.353T>A	p.Leu118Ter	p.L118*	ENST00000441802	NM_005245.3	118	tTg/tAg																																																																														
APC	324	MSKCC	GRCh37	5	112116499	112116499	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	38	197	0	ENST00000257430.4:c.544A>G	p.Thr182Ala	p.T182A	ENST00000257430	NM_000038.5	182	Aca/Gca																																																																														
APC	324	MSKCC	GRCh37	5	112170780	112170783	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	136	509	0	ENST00000257430.4:c.1879_1882del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	626	ACAAac/ac																																																																														
APC	324	MSKCC	GRCh37	5	112173785	112173785	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	75	257	0	ENST00000257430.4:c.2496del	p.Ser833AlafsTer9	p.S833Afs*9	ENST00000257430	NM_000038.5	832	Ccc/cc																																																																														
APC	324	MSKCC	GRCh37	5	112178262	112178262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	70	289	0	ENST00000257430.4:c.6971C>T	p.Pro2324Leu	p.P2324L	ENST00000257430	NM_000038.5	2324	cCt/cTt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449859	149449859	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	196	616	0	ENST00000286301.3:c.1205del	p.Pro402GlnfsTer3	p.P402Qfs*3	ENST00000286301	NM_005211.3	402	cCa/ca																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679442	30679442	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	125	394	0	ENST00000376406.3:c.2128+2T>C		p.X710_splice	ENST00000376406	NM_014641.2	710																																																																															
TAP2	6891	MSKCC	GRCh37	6	32798511	32798511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	58	549	0	ENST00000374899.4:c.1345C>T	p.Arg449Ter	p.R449*	ENST00000374899	NM_018833.2	449	Cga/Tga																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805789	32805790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	61	595	0	ENST00000374899.4:c.221_222insA	p.Leu75ProfsTer92	p.L75Pfs*92	ENST00000374899	NM_018833.2	74	ccc/ccAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609768	117609768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	107	439	0	ENST00000368508.3:c.6931G>A	p.Ala2311Thr	p.A2311T	ENST00000368508	NM_002944.2	2311	Gca/Aca																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199687	138199687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	116	425	2	ENST00000237289.4:c.1105G>A	p.Ala369Thr	p.A369T	ENST00000237289	NM_001270507.1	369	Gcc/Acc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450357	50450357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	175	475	0	ENST00000331340.3:c.541G>A	p.Ala181Thr	p.A181T	ENST00000331340	NM_006060.4	181	Gcc/Acc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468270	50468270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	124	573	1	ENST00000331340.3:c.1505G>T	p.Arg502Leu	p.R502L	ENST00000331340	NM_006060.4	502	cGg/cTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55233037	55233037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	195	409	0	ENST00000275493.2:c.1787C>T	p.Pro596Leu	p.P596L	ENST00000275493	NM_005228.3	596	cCg/cTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	169	650	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345759	152345760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	48	180	0	ENST00000359321.1:c.810dup	p.Ile271TyrfsTer8	p.I271Yfs*8	ENST00000359321	NM_005431.1	270	-/T																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152357857	152357857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	82	278	4	ENST00000359321.1:c.50G>A	p.Arg17Gln	p.R17Q	ENST00000359321	NM_005431.1	17	cGa/cAa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900210	101900210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	124	265	0	ENST00000374994.4:c.644G>C	p.Arg215Pro	p.R215P	ENST00000374994	NM_004612.2	215	cGa/cCa																																																																														
MED12	9968	MSKCC	GRCh37	X	70354253	70354253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	164	292	1	ENST00000374080.3:c.4664C>T	p.Thr1555Met	p.T1555M	ENST00000374080		1555	aCg/aTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0047886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	42	161	2	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	110	621	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
AR	367	MSKCC	GRCh37	X	66941796	66941796	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	37	215	0	ENST00000374690.3:c.2440T>G	p.Phe814Val	p.F814V	ENST00000374690	NM_000044.3	814	Ttc/Gtc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032541	12032541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	51	269	0	ENST00000353533.5:c.977C>T	p.Pro326Leu	p.P326L	ENST00000353533	NM_003010.3	326	cCg/cTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144027	11144027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	62	456	0	ENST00000344626.4:c.3608G>A	p.Arg1203His	p.R1203H	ENST00000344626	NM_003072.3	1203	cGc/cAc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3115069	3115069	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	60	428	0	ENST00000078429.4:c.604C>T	p.Arg202Trp	p.R202W	ENST00000078429	NM_002067.2	202	Cgg/Tgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	46	247	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883114	37883114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	87	552	0	ENST00000269571.5:c.3017G>A	p.Arg1006His	p.R1006H	ENST00000269571		1006	cGc/cAc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30396543	30396543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	77	293	0	ENST00000331968.5:c.176G>A	p.Arg59His	p.R59H	ENST00000331968	NM_002742.2	59	cGt/cAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566706	212566706	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	57	223	0	ENST00000342788.4:c.1475A>T	p.Lys492Ile	p.K492I	ENST00000342788	NM_005235.2	492	aAa/aTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058490	69058490	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	64	388	0	ENST00000288368.4:c.4134A>C	p.Lys1378Asn	p.K1378N	ENST00000288368	NM_024870.2	1378	aaA/aaC																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0047890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	690	444	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0047890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	225	225	0				ENST00000310581	NM_198253.2																																																																																
MYOD1	4654	MSKCC	GRCh37	11	17741756	17741756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	302	319	1	ENST00000250003.3:c.427C>T	p.Arg143Trp	p.R143W	ENST00000250003	NM_002478.4	143	Cgg/Tgg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161317	55161317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	234	256	0	ENST00000257290.5:c.3148A>G	p.Ile1050Val	p.I1050V	ENST00000257290	NM_006206.4	1050	Att/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	200	639	0	ENST00000269305.4:c.389T>C	p.Leu130Pro	p.L130P	ENST00000269305	NM_001126112.2	130	cTc/cCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0047892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	161	442	1	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0047892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	173	512	0	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0047892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	173	512	0	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0047892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	173	512	0	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566854	212566854	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	61	204	0	ENST00000342788.4:c.1327A>G	p.Thr443Ala	p.T443A	ENST00000342788	NM_005235.2	443	Acc/Gcc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205174	128205175	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	177	525	0	ENST00000341105.2:c.266dup	p.Leu89PhefsTer96	p.L89Ffs*96	ENST00000341105	NM_032638.4	89	ttg/ttTg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0047893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	28	253	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	285	541	0	ENST00000269305.4:c.761T>G	p.Ile254Ser	p.I254S	ENST00000269305	NM_001126112.2	254	aTc/aGc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	132	404	0	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244097	153244097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	190	393	0	ENST00000281708.4:c.2060G>A	p.Gly687Glu	p.G687E	ENST00000281708	NM_033632.3	687	gGg/gAg																																																																														
APC	324	MSKCC	GRCh37	5	112175617	112175617	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	35	246	0	ENST00000257430.4:c.4326del	p.Pro1443LeufsTer30	p.P1443Lfs*30	ENST00000257430	NM_000038.5	1442	ccT/cc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933540	36933540	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	102	595	0	ENST00000361632.4:c.1747C>G	p.Arg583Gly	p.R583G	ENST00000361632		583	Cgt/Ggt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247569	123247569	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	133	435	0	ENST00000358487.5:c.1922A>G	p.Lys641Arg	p.K641R	ENST00000358487	NM_000141.4	641	aAa/aGa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549094	21549094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	53	347	1	ENST00000382592.4:c.3182C>T	p.Ala1061Val	p.A1061V	ENST00000382592	NM_014572.2	1061	gCa/gTa																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250698	26250698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	67	493	0	ENST00000446824.2:c.136A>G	p.Thr46Ala	p.T46A	ENST00000446824	NM_021018.2	46	Act/Gct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400089	139400089	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	109	697	0	ENST00000277541.6:c.4259T>C	p.Phe1420Ser	p.F1420S	ENST00000277541	NM_017617.3	1420	tTc/tCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	116	285	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	125	397	1	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																														
PARP1	142	MSKCC	GRCh37	1	226578136	226578136	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	86	338	0	ENST00000366794.5:c.592C>T	p.Gln198Ter	p.Q198*	ENST00000366794	NM_001618.3	198	Cag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1207084	1207084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	124	545	0	ENST00000326873.7:c.172G>C	p.Gly58Arg	p.G58R	ENST00000326873	NM_000455.4	58	Ggc/Cgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214386	36214386	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	92	411	0	ENST00000222270.7:c.3040G>T	p.Glu1014Ter	p.E1014*	ENST00000222270	NM_014727.1	1014	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	49039165	49039202	+	frameshift_variant	Frame_Shift_Del	DEL	AGTATGATTCTATTATAGTATTCTATAACTCGGTCTTC	AGTATGATTCTATTATAGTATTCTATAACTCGGTCTTC	CGTATG			P-0047894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	41	239	0	ENST00000267163.4:c.2243_2280delinsCGTATG	p.Glu748AlafsTer36	p.E748Afs*36	ENST00000267163	NM_000321.2	748	gAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTC/gCGTATG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0047896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	10	328	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896543	78896543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2108	263	591	0	ENST00000306801.3:c.2540C>T	p.Pro847Leu	p.P847L	ENST00000306801	NM_020761.2	847	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577028	7577053	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTCCCTGGGGGCAGCTCGTGGTGA	TGCTCCCTGGGGGCAGCTCGTGGTGA	-			P-0047896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	26	561	0	ENST00000269305.4:c.885_910del	p.His296Ter	p.H296*	ENST00000269305	NM_001126112.2	295	ccTCACCACGAGCTGCCCCCAGGGAGCAct/ccct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	179	346	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	186	385	0	ENST00000342988.3:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000342988	NM_005359.5	352	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	314	760	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579439	7579439	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201717599		P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	44	616	0	ENST00000269305.4:c.248C>T	p.Ala83Val	p.A83V	ENST00000269305	NM_001126112.2	83	gCg/gTg																																																																														
CBL	867	MSKCC	GRCh37	11	119149250	119149250	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200341293		P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	300	490	1	ENST00000264033.4:c.1258C>T	p.Arg420Ter	p.R420*	ENST00000264033	NM_005188.3	420	Cga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	29446295	29446295	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	133	680	0	ENST00000389048.3:c.3272A>G	p.Asp1091Gly	p.D1091G	ENST00000389048	NM_004304.4	1091	gAc/gGc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488647	212488647	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	170	283	0	ENST00000342788.4:c.2202A>T	p.Lys734Asn	p.K734N	ENST00000342788	NM_005235.2	734	aaA/aaT																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197246	26197246	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	84	372	0	ENST00000356476.2:c.233A>T	p.Asp78Val	p.D78V	ENST00000356476		78	gAc/gTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553252	106553252	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	82	577	0	ENST00000369096.4:c.1217A>T	p.Tyr406Phe	p.Y406F	ENST00000369096	NM_001198.3	406	tAc/tTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729696	41729696	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	257	606	0	ENST00000242208.4:c.833G>C	p.Gly278Ala	p.G278A	ENST00000242208	NM_002192.2	278	gGg/gCg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	235	347	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11024639	11024641	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0047903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	315	581	4	ENST00000327064.4:c.763_765del	p.Ile255del	p.I255del	ENST00000327064	NM_199141.1	252	gaCATc/gac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0047905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1204	69	824	1	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
RHOA	387	MSKCC	GRCh37	3	49397682	49397683	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0047905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	49	493	1	ENST00000418115.1:c.541_542delinsTT	p.Ala181Phe	p.A181F	ENST00000418115	NM_001664.2	181	GCt/TTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	161	769	1	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	169	754	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	215	780	0	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437527	56437527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	156	579	0	ENST00000407977.2:c.935G>A	p.Cys312Tyr	p.C312Y	ENST00000407977		312	tGc/tAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604706	48604706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	36	391	0	ENST00000342988.3:c.1528G>C	p.Gly510Arg	p.G510R	ENST00000342988	NM_005359.5	510	Gga/Cga																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935114	49935114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	46	456	0	ENST00000296474.3:c.1885G>A	p.Val629Met	p.V629M	ENST00000296474	NM_002447.2	629	Gtg/Atg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202435	138202435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	56	525	0	ENST00000237289.4:c.2352G>T	p.Gln784His	p.Q784H	ENST00000237289	NM_001270507.1	784	caG/caT																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	98	279	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	27	502	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878563	151878563	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	473	538	3	ENST00000262189.6:c.6382C>T	p.Gln2128Ter	p.Q2128*	ENST00000262189	NM_170606.2	2128	Cag/Tag																																																																														
WT1	7490	MSKCC	GRCh37	11	32413597	32413597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	129	357	0	ENST00000332351.3:c.1353C>A	p.Phe451Leu	p.F451L	ENST00000332351	NM_024426.4	451	ttC/ttA																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	153	509	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
MGA	23269	MSKCC	GRCh37	15	42041349	42041350	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	203	1009	1	ENST00000219905.7:c.5544_5545insA	p.Ser1849IlefsTer2	p.S1849Ifs*2	ENST00000219905	NM_001164273.1	1848	-/A																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604770	48604770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	17	350	0	ENST00000342988.3:c.1594delG	p.Ala532ProfsTer5	p.A532Pfs*5	ENST00000342988	NM_005359.5	531	cGg/cg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415856	49415858	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0010538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	179	627	0	ENST00000301067.7:c.16489_16491delATC	p.Ile5497del	p.I5497del	ENST00000301067	NM_003482.3	5497	ATC/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	375	337	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0044889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	421	722	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0044889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	204	364	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0044889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	204	364	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
POLE	5426	MSKCC	GRCh37	12	133225652	133225652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	313	676	0	ENST00000320574.5:c.4012G>A	p.Glu1338Lys	p.E1338K	ENST00000320574	NM_006231.2	1338	Gag/Aag																																																																														
IRF4	3662	MSKCC	GRCh37	6	393322	393322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	137	504	1	ENST00000380956.4:c.170C>T	p.Ala57Val	p.A57V	ENST00000380956	NM_001195286.1	57	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	272	757	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437104	110437104	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	12	141	0	ENST00000375856.3:c.1297A>T	p.Met433Leu	p.M433L	ENST00000375856	NM_003749.2	433	Atg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	646	858	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
CDH1	999	MSKCC	GRCh37	16	68844174	68844174	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	206	629	0	ENST00000261769.5:c.762T>A	p.Asp254Glu	p.D254E	ENST00000261769	NM_004360.3	254	gaT/gaA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970913	21970913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	222	894	0	ENST00000304494.5:c.445G>T	p.Glu149Ter	p.E149*	ENST00000304494	NM_000077.4	149	Gaa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970913	21970913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	222	894	0	ENST00000304494.5:c.445G>T	p.Glu149Ter	p.E149*	ENST00000304494	NM_000077.4	149	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108216494	108216494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	18	200	0	ENST00000278616.4:c.8443G>C	p.Glu2815Gln	p.E2815Q	ENST00000278616	NM_000051.3	2815	Gag/Cag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918799	50918799	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146344351		P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	677	1075	0	ENST00000440232.2:c.2669C>T	p.Ala890Val	p.A890V	ENST00000440232	NM_002691.3	890	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100907	27100907	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	263	603	0	ENST00000324856.7:c.4189C>T	p.Gln1397Ter	p.Q1397*	ENST00000324856	NM_006015.4	1397	Cag/Tag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120483286	120483286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	85	335	0	ENST00000256646.2:c.3075G>C	p.Glu1025Asp	p.E1025D	ENST00000256646	NM_024408.3	1025	gaG/gaC																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114905769	114905769	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	171	312	2	ENST00000543371.1:c.789-1G>T		p.X263_splice	ENST00000543371	NM_001198531.1	263																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49415902	49415912	+	frameshift_variant	Frame_Shift_Del	DEL	ACACAGTTAGG	ACACAGTTAGG	-			P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	209	485	0	ENST00000301067.7:c.16435_16445del	p.Pro5479GlyfsTer7	p.P5479Gfs*7	ENST00000301067	NM_003482.3	5479	CCTAACTGTGTg/g																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391133	89391133	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	121	473	1	ENST00000336596.2:c.1199T>A	p.Leu400Gln	p.L400Q	ENST00000336596	NM_005233.5	400	cTg/cAg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287574	33287574	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	124	681	0	ENST00000374542.5:c.1523T>G	p.Leu508Arg	p.L508R	ENST00000374542	NM_001141970.1	508	cTg/cGg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933463	39933463	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	133	795	0	ENST00000378444.4:c.1136T>A	p.Val379Asp	p.V379D	ENST00000378444	NM_001123385.1	379	gTt/gAt																																																																														
MED12	9968	MSKCC	GRCh37	X	70347790	70347790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	58	501	0	ENST00000374080.3:c.3029C>T	p.Pro1010Leu	p.P1010L	ENST00000374080		1010	cCa/cTa																																																																														
AR	367	MSKCC	GRCh37	X	66766399	66766399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	12	122	0	ENST00000374690.3:c.1411G>A	p.Gly471Ser	p.G471S	ENST00000374690	NM_000044.3	471	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	52	684	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40481471	40481471	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	51	422	1	ENST00000264657.5:c.1238T>A	p.Leu413Gln	p.L413Q	ENST00000264657	NM_139276.2	413	cTg/cAg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46597066	46597066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	37	383	0	ENST00000263734.3:c.880C>T	p.Gln294Ter	p.Q294*	ENST00000263734	NM_001430.4	294	Cag/Tag																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197391	26197391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	27	383	1	ENST00000356476.2:c.88G>A	p.Ala30Thr	p.A30T	ENST00000356476		30	Gct/Act																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	106	613	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	79	248	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572002	64572002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	138	767	0	ENST00000337652.1:c.1652C>T	p.Pro551Leu	p.P551L	ENST00000337652	NM_130803.2	551	cCg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	13	480	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562378	21562378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	248	806	1	ENST00000382592.4:c.1541C>T	p.Pro514Leu	p.P514L	ENST00000382592	NM_014572.2	514	cCg/cTg																																																																														
IRF4	3662	MSKCC	GRCh37	6	397219	397219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143144957		P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	66	320	0	ENST00000380956.4:c.604G>A	p.Gly202Ser	p.G202S	ENST00000380956	NM_001195286.1	202	Ggc/Agc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912670	32912670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	52	275	0	ENST00000380152.3:c.4178C>T	p.Ala1393Val	p.A1393V	ENST00000380152		1393	gCg/gTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910787	114910788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	92	410	0	ENST00000543371.1:c.907dup	p.Thr303AsnfsTer25	p.T303Nfs*25	ENST00000543371	NM_001198531.1	302	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7579364	7579364	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	373	942	0	ENST00000269305.4:c.323delG	p.Gly108ValfsTer15	p.G108Vfs*15	ENST00000269305	NM_001126112.2	108	gGt/gt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942188	17942188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	67	793	0	ENST00000458235.1:c.2827C>T	p.Arg943Cys	p.R943C	ENST00000458235	NM_000215.3	943	Cgc/Tgc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436438	52436438	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0047709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	252	673	0	ENST00000460680.1:c.2057-1G>T		p.X686_splice	ENST00000460680	NM_004656.3	686																																																																															
NF1	4763	MSKCC	GRCh37	17	29683534	29683534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	56	281	0	ENST00000358273.4:c.7672G>A	p.Glu2558Lys	p.E2558K	ENST00000358273	NM_001042492.2	2558	Gaa/Aaa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65309869	65309869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	178	513	0	ENST00000342505.4:c.2281C>G	p.Pro761Ala	p.P761A	ENST00000342505	NM_002227.2	761	Cct/Gct																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351573	89351573	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	74	805	0	ENST00000301030.4:c.1377G>C	p.Lys459Asn	p.K459N	ENST00000301030	NM_001256183.1	459	aaG/aaC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098355	47098356	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AT			P-0047709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	143	491	1	ENST00000409792.3:c.6918_6919delinsAT	p.Tyr2306_Gly2307delinsTer	p.Y2306_G2307delins*	ENST00000409792	NM_014159.6	2306	taTGgt/taATgt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349637	89349640	+	missense_variant	Missense_Mutation	ONP	CATC	CATC	AATA			P-0047709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	58	793	1	ENST00000301030.4:c.3310_3313delinsTATT	p.Asp1104_Asp1105delinsTyrTyr	p.D1104_D1105delinsYY	ENST00000301030	NM_001256183.1	1104	GATGac/TATTac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	52	303	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78433847	78433848	+	splice_donor_variant	Splice_Site	DEL	AC	AC	-			P-0047710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	31	231	1	ENST00000370768.2:c.250+1_250+2del		p.X84_splice	ENST00000370768	NM_003902.3	84																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059242	27059242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	87	406	0	ENST00000324856.7:c.1879del	p.Asp627IlefsTer2	p.D627Ifs*2	ENST00000324856	NM_006015.4	627	Gat/at																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608248	28608248	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	72	412	2	ENST00000241453.7:c.1808G>A	p.Trp603Ter	p.W603*	ENST00000241453	NM_004119.2	603	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579343	7579346	+	frameshift_variant	Frame_Shift_Del	DEL	TGCA	TGCA	GC			P-0047710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	135	657	0	ENST00000269305.4:c.341_344delinsGC	p.Leu114CysfsTer34	p.L114Cfs*34	ENST00000269305	NM_001126112.2	114	tTGCAt/tGCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	114	269	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	304	424	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
EP300	2033	MSKCC	GRCh37	22	41553402	41553402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	105	228	2	ENST00000263253.7:c.3491G>A	p.Cys1164Tyr	p.C1164Y	ENST00000263253	NM_001429.3	1164	tGt/tAt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670324	134670324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	292	332	0	ENST00000398015.3:c.235C>T	p.Arg79Trp	p.R79W	ENST00000398015	NM_004441.4	79	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49441780	49441780	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	395	490	0	ENST00000301067.7:c.4204C>T	p.Gln1402Ter	p.Q1402*	ENST00000301067	NM_003482.3	1402	Cag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133220094	133220094	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs150545516		P-0047711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	434	600	1	ENST00000320574.5:c.4343A>G	p.Asn1448Ser	p.N1448S	ENST00000320574	NM_006231.2	1448	aAt/aGt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026603	6026603	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	450	685	0	ENST00000265849.7:c.1793A>C	p.Gln598Pro	p.Q598P	ENST00000265849	NM_000535.5	598	cAg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578264	7578275	+	frameshift_variant	Frame_Shift_Del	DEL	GATAAGATGCTG	GATAAGATGCTG	CATA			P-0047711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	321	510	2	ENST00000269305.4:c.574_585delinsTATG	p.Gln192TyrfsTer14	p.Q192Yfs*14	ENST00000269305	NM_001126112.2	192	CAGCATCTTATC/TATG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	198	259	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220703	1220703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	202	689	0	ENST00000326873.7:c.721G>C	p.Ala241Pro	p.A241P	ENST00000326873	NM_000455.4	241	Gct/Cct																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073488	8073492	+	frameshift_variant	Frame_Shift_Del	DEL	AACTA	AACTA	-			P-0047712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	129	240	0	ENST00000377482.5:c.1167_1171del	p.Ser390AsnfsTer8	p.S390Nfs*8	ENST00000377482	NM_018948.3	389	gtTAGTTca/gtca																																																																														
MYCL	4610	MSKCC	GRCh37	1	40367541	40367541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	16	37	0	ENST00000397332.2:c.20G>T	p.Cys7Phe	p.C7F	ENST00000397332	NM_001033082.2	7	tGc/tTc																																																																														
ATM	472	MSKCC	GRCh37	11	108121799	108121799	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0047712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	119	200	0	ENST00000278616.4:c.1607+1del		p.C536fs	ENST00000278616	NM_000051.3	536	tGt/tt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265153	46265154	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0047712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	62	216	0	ENST00000371998.3:c.2023_2024delinsCT	p.Gly675Leu	p.G675L	ENST00000371998		675	GGg/CTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	531	184	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0047714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	403	267	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642499	117642499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	185	341	0	ENST00000368508.3:c.5700A>G	p.Ile1900Met	p.I1900M	ENST00000368508	NM_002944.2	1900	atA/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0047716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	229	698	1	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0047716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	47	208	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0047716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	25	189	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133209050	133209050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	39	452	0	ENST00000320574.5:c.6181C>G	p.Gln2061Glu	p.Q2061E	ENST00000320574	NM_006231.2	2061	Cag/Gag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090428	37090428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	117	363	0	ENST00000231790.2:c.2023A>G	p.Ser675Gly	p.S675G	ENST00000231790	NM_000249.3	675	Agc/Ggc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213902	66213902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	18	305	1	ENST00000273854.3:c.2528G>T	p.Arg843Ile	p.R843I	ENST00000273854	NM_004439.5	843	aGa/aTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	487	432	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	147	249	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	1316	838	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180039583	180039583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75614493		P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	276	784	1	ENST00000261937.6:c.3460G>A	p.Gly1154Arg	p.G1154R	ENST00000261937	NM_182925.4	1154	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112175366	112175366	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	63	173	0	ENST00000257430.4:c.4075A>T	p.Lys1359Ter	p.K1359*	ENST00000257430	NM_000038.5	1359	Aaa/Taa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546574	9546574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	202	320	0	ENST00000353224.5:c.1448G>A	p.Arg483Gln	p.R483Q	ENST00000353224	NM_177990.2	483	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692965	89692965	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	103	374	1	ENST00000371953.3:c.449A>T	p.Glu150Val	p.E150V	ENST00000371953	NM_000314.4	150	gAg/gTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108105	30108105	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	93	321	0	ENST00000331968.5:c.702A>T	p.Lys234Asn	p.K234N	ENST00000331968	NM_002742.2	234	aaA/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112174170	112174170	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	99	212	0	ENST00000257430.4:c.2879C>A	p.Ser960Ter	p.S960*	ENST00000257430	NM_000038.5	960	tCa/tAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0047720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	209	270	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	158	401	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	164	277	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	300	534	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	129	228	0	ENST00000288602.6:c.1803A>C	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaC																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562670	21562670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	332	682	1	ENST00000382592.4:c.1249G>A	p.Gly417Ser	p.G417S	ENST00000382592	NM_014572.2	417	Ggt/Agt																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665024	138665024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	73	172	0	ENST00000330315.3:c.541G>A	p.Ala181Thr	p.A181T	ENST00000330315	NM_023067.3	181	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0047737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	38	643	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729688	41729688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	155	671	1	ENST00000242208.4:c.841G>A	p.Ala281Thr	p.A281T	ENST00000242208	NM_002192.2	281	Gca/Aca																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73775242	73775242	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	76	598	0	ENST00000254810.4:c.14A>T	p.Lys5Met	p.K5M	ENST00000254810	NM_005324.3	5	aAg/aTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76937984	76937984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	17	248	0	ENST00000373344.5:c.2764G>A	p.Asp922Asn	p.D922N	ENST00000373344	NM_000489.3	922	Gat/Aat																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250428	10250428	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	84	655	0	ENST00000340748.4:c.3824A>G	p.Lys1275Arg	p.K1275R	ENST00000340748		1275	aAg/aGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27102067	27102067	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0047737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	27	486	0	ENST00000324856.7:c.4994-1G>A		p.X1665_splice	ENST00000324856	NM_006015.4	1665																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	208	743	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523027	25523027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	91	947	0	ENST00000264709.3:c.158G>A	p.Arg53Lys	p.R53K	ENST00000264709	NM_175629.2	53	aGg/aAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201689	66201689	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	106	417	0	ENST00000273854.3:c.2813A>C	p.Asn938Thr	p.N938T	ENST00000273854	NM_004439.5	938	aAc/aCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0047739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	454	712	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0047739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	80	267	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535403	66535403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	69	469	0	ENST00000273854.3:c.58G>A	p.Asp20Asn	p.D20N	ENST00000273854	NM_004439.5	20	Gac/Aac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178578	32178578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	207	749	0	ENST00000375023.3:c.2816G>T	p.Cys939Phe	p.C939F	ENST00000375023	NM_004557.3	939	tGc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	125	349	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	244	703	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057727	27057727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	269	636	0	ENST00000324856.7:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000324856	NM_006015.4	479	Cag/Tag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138158	64138158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	410	863	0	ENST00000334205.4:c.2081C>T	p.Ser694Phe	p.S694F	ENST00000334205	NM_003942.2	694	tCt/tTt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852733	63852733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	93	421	0	ENST00000279873.7:c.3511C>G	p.Gln1171Glu	p.Q1171E	ENST00000279873	NM_032199.2	1171	Caa/Gaa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204859	94204859	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	64	367	0	ENST00000323929.3:c.726C>G	p.Ile242Met	p.I242M	ENST00000323929	NM_005591.3	242	atC/atG																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244550	46244550	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	185	401	1	ENST00000334344.6:c.2645del	p.Gly882ValfsTer10	p.G882Vfs*10	ENST00000334344	NM_152641.2	882	Ggt/gt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108013	30108013	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	224	458	0	ENST00000331968.5:c.794C>G	p.Ser265Cys	p.S265C	ENST00000331968	NM_002742.2	265	tCt/tGt																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872524	35872524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	240	467	0	ENST00000216797.5:c.379G>T	p.Ala127Ser	p.A127S	ENST00000216797	NM_020529.2	127	Gct/Tct																																																																														
MGA	23269	MSKCC	GRCh37	15	41961995	41961995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	127	438	0	ENST00000219905.7:c.903G>T	p.Glu301Asp	p.E301D	ENST00000219905	NM_001164273.1	301	gaG/gaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992838	72992838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	144	643	0	ENST00000268489.5:c.1207C>A	p.Leu403Ile	p.L403I	ENST00000268489	NM_006885.3	403	Ctt/Att																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81891908	81891908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	198	429	0	ENST00000359376.3:c.378G>C	p.Leu126Phe	p.L126F	ENST00000359376	NM_002661.3	126	ttG/ttC																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461473	138461473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	161	446	0	ENST00000289153.2:c.548C>T	p.Ser183Phe	p.S183F	ENST00000289153	NM_006219.2	183	tCc/tTc																																																																														
BCL6	604	MSKCC	GRCh37	3	187443403	187443403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	160	331	0	ENST00000232014.4:c.1723C>G	p.Arg575Gly	p.R575G	ENST00000232014	NM_001130845.1	575	Cgt/Ggt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39074252	39074252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	242	568	0	ENST00000357387.3:c.58G>A	p.Asp20Asn	p.D20N	ENST00000357387	NM_152756.3	20	Gac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929160	44929161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	227	579	0	ENST00000377967.4:c.2261dup	p.Met754IlefsTer10	p.M754Ifs*10	ENST00000377967	NM_021140.2	754	atg/aTtg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039414	47039415	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTGT			P-0047741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	272	647	0	ENST00000329236.7:c.806_807insTTTGT	p.Phe270LeufsTer139	p.F270Lfs*139	ENST00000329236	NM_001204466.1	269	gcc/gcTTTGTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	115	309	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	229	532	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652147	36652148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	273	883	0	ENST00000244741.5:c.270dup	p.Gly91ArgfsTer38	p.G91Rfs*38	ENST00000244741	NM_000389.4	90	gga/ggAa																																																																														
RB1	5925	MSKCC	GRCh37	13	48942685	48942685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	35	233	0	ENST00000267163.4:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000267163	NM_000321.2	358	Cga/Tga																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0047743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	354	750	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385257	41385257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	144	606	0	ENST00000373198.4:c.704C>A	p.Thr235Lys	p.T235K	ENST00000373198	NM_133170.3	235	aCg/aAg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119595282	119595282	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	19	202	0	ENST00000316626.5:c.887T>G	p.Ile296Ser	p.I296S	ENST00000316626		296	aTt/aGt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651961	36651962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCAGC			P-0047743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	206	764	0	ENST00000244741.5:c.84_88dup	p.Leu30ArgfsTer3	p.L30Rfs*3	ENST00000244741	NM_000389.4	28	gag/gaGCAGCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	381	984	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871182	12871182	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	129	382	0	ENST00000228872.4:c.410delC	p.Pro137ArgfsTer8	p.P137Rfs*8	ENST00000228872	NM_004064.3	137	Ccg/cg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651621	206651621	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149987336		P-0047746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	254	1127	1	ENST00000367120.3:c.931G>A	p.Val311Ile	p.V311I	ENST00000367120	NM_014002.3	311	Gtc/Atc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153252022	153252022	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0047746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	121	424	0	ENST00000281708.4:c.986-2del		p.X329_splice	ENST00000281708	NM_033632.3	329																																																																															
APC	324	MSKCC	GRCh37	5	112174882	112174882	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	58	294	0	ENST00000257430.4:c.3591del	p.Ser1198GlnfsTer67	p.S1198Qfs*67	ENST00000257430	NM_000038.5	1197	ttC/tt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	61	280	0	ENST00000345146.2:c.394C>G	p.Arg132Gly	p.R132G	ENST00000345146	NM_005896.2	132	Cgt/Ggt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	233	829	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274803	123274803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	138	552	0	ENST00000358487.5:c.1115C>G	p.Ser372Cys	p.S372C	ENST00000358487	NM_000141.4	372	tCc/tGc																																																																														
RB1	5925	MSKCC	GRCh37	13	49033844	49033844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	148	388	0	ENST00000267163.4:c.1981C>T	p.Arg661Trp	p.R661W	ENST00000267163	NM_000321.2	661	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0047751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	40	383	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	20	364	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26978124	26978124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	302	680	0	ENST00000381527.3:c.1301C>G	p.Pro434Arg	p.P434R	ENST00000381527	NM_001260.1	434	cCt/cGt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31372634	31372634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201395541		P-0047751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	325	591	0	ENST00000328111.2:c.275G>A	p.Arg92Gln	p.R92Q	ENST00000328111	NM_006892.3	92	cGg/cAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151927366	151927366	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	26	47	0	ENST00000262189.6:c.2810A>C	p.Glu937Ala	p.E937A	ENST00000262189	NM_170606.2	937	gAa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	523	1018	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0047753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	82	205	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112137024	112137024	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	54	329	1	ENST00000257430.4:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000257430	NM_000038.5	260	Cag/Tag																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577563	64577587	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GGGCGGCCTTCAGCCCCATGGCGGC	GGGCGGCCTTCAGCCCCATGGCGGC	-			P-0047754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	82	358	0	ENST00000337652.1:c.-6_19del		p.*2*	ENST00000337652	NM_130803.2																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118359378	118359378	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	237	403	0	ENST00000534358.1:c.4382A>G	p.Glu1461Gly	p.E1461G	ENST00000534358	NM_005933.3	1461	gAg/gGg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287314	33287314	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	233	535	0	ENST00000374542.5:c.1783G>T	p.Glu595Ter	p.E595*	ENST00000374542	NM_001141970.1	595	Gag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140494152	140494152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	301	715	0	ENST00000288602.6:c.1096G>C	p.Ala366Pro	p.A366P	ENST00000288602	NM_004333.4	366	Gct/Cct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	106	154	0	ENST00000371953.3:c.48T>A	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589663	67589663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0021823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			87	35	75	0	ENST00000274335.5:c.1425+1G>A		p.X475_splice	ENST00000274335		475																																																																															
TBX3	6926	MSKCC	GRCh37	12	115115463	115115463	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0021823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	140	136	0	ENST00000257566.3:c.865-2A>G		p.X289_splice	ENST00000257566	NM_016569.3	289																																																																															
TCF3	6929	MSKCC	GRCh37	19	1620978	1620979	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			995	251	447	0	ENST00000344749.5:c.1081dup	p.Gln361ProfsTer32	p.Q361Pfs*32	ENST00000344749	NM_001136139.2	361	cag/cCag																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29106010	29106010	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	67	102	0	ENST00000328354.6:c.830del	p.Leu277Ter	p.L277*	ENST00000328354	NM_007194.3	277	tTg/tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578262	7578266	+	missense_variant	Missense_Mutation	ONP	CGGAT	CGGAT	GAAGG			P-0021823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			792	33	249	0	ENST00000269305.4:c.583_587delinsCCTTC	p.Ile195_Arg196delinsProSer	p.I195_R196delinsPS	ENST00000269305	NM_001126112.2	195	ATCCGa/CCTTCa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026132	71026132	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023036-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			406	120	269	0	ENST00000318789.4:c.1490del	p.Arg497GlnfsTer30	p.R497Qfs*30	ENST00000318789	NM_032682.5	497	cGa/ca																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135345	30135345	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	96	318	0	ENST00000331968.5:c.473C>G	p.Ala158Gly	p.A158G	ENST00000331968	NM_002742.2	158	gCt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0027242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	383	445	0	ENST00000269305.4:c.783-2A>G		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627319	37627319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	121	381	0	ENST00000447079.4:c.1234G>C	p.Ala412Pro	p.A412P	ENST00000447079	NM_015083.1	412	Gca/Cca																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201791	66201791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	105	356	0	ENST00000273854.3:c.2711C>T	p.Pro904Leu	p.P904L	ENST00000273854	NM_004439.5	904	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0027242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	198	498	0				ENST00000310581	NM_198253.2																																																																																
LYN	4067	MSKCC	GRCh37	8	56859019	56859019	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	76	364	0	ENST00000519728.1:c.145C>T	p.Gln49Ter	p.Q49*	ENST00000519728	NM_002350.3	49	Cag/Tag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949002	44949003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	151	126	0	ENST00000377967.4:c.3565dup	p.Leu1189ProfsTer10	p.L1189Pfs*10	ENST00000377967	NM_021140.2	1188	ttc/ttCc																																																																														
ATRX	546	MSKCC	GRCh37	X	76889184	76889184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027242-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			60	117	137	0	ENST00000373344.5:c.4826A>G	p.His1609Arg	p.H1609R	ENST00000373344	NM_000489.3	1609	cAt/cGt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937670	36937670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032466-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	319	657	0	ENST00000361632.4:c.1068G>C	p.Trp356Cys	p.W356C	ENST00000361632		356	tgG/tgC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446079	49446079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032466-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	188	872	0	ENST00000301067.7:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000301067	NM_003482.3	463	Gag/Aag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714152	43714152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032466-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			943	165	630	0	ENST00000382044.4:c.4001G>A	p.Ser1334Asn	p.S1334N	ENST00000382044	NM_001141980.1	1334	aGc/aAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349651	89349651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032466-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	121	557	0	ENST00000301030.4:c.3299C>G	p.Ser1100Cys	p.S1100C	ENST00000301030	NM_001256183.1	1100	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032466-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	135	567	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032466-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			361	340	465	1	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032466-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	206	306	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032466-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			864	454	425	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945162	38945162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032466-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	41	138	0	ENST00000357387.3:c.4642G>C	p.Asp1548His	p.D1548H	ENST00000357387	NM_152756.3	1548	Gat/Cat																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149433730	149433730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032466-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	278	639	0	ENST00000286301.3:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000286301	NM_005211.3	941	Gag/Tag																																																																														
MET	4233	MSKCC	GRCh37	7	116397813	116397813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032466-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	70	370	0	ENST00000397752.3:c.2087C>T	p.Thr696Ile	p.T696I	ENST00000397752	NM_000245.2	696	aCa/aTa																																																																														
BTK	695	MSKCC	GRCh37	X	100611828	100611828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032466-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	100	376	0	ENST00000308731.7:c.1293G>A	p.Met431Ile	p.M431I	ENST00000308731	NM_000061.2	431	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	356	790	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	141	832	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	49	358	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	99	428	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	99	716	3	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48936995	48936995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	158	432	0	ENST00000267163.4:c.763C>T	p.Arg255Ter	p.R255*	ENST00000267163	NM_000321.2	255	Cga/Tga																																																																														
FANCC	2176	MSKCC	GRCh37	9	97912359	97912359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	64	437	0	ENST00000289081.3:c.532G>A	p.Glu178Lys	p.E178K	ENST00000289081	NM_000136.2	178	Gag/Aag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37083821	37083821	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs56185292		P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	102	434	0	ENST00000231790.2:c.1730C>T	p.Ser577Leu	p.S577L	ENST00000231790	NM_000249.3	577	tCg/tTg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	210	681	17	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																														
ATRX	546	MSKCC	GRCh37	X	76813031	76813031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	242	586	0	ENST00000373344.5:c.6590G>A	p.Arg2197His	p.R2197H	ENST00000373344	NM_000489.3	2197	cGt/cAt																																																																														
ERG	2078	MSKCC	GRCh37	21	39775583	39775583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	93	583	3	ENST00000288319.7:c.437C>T	p.Ala146Val	p.A146V	ENST00000288319	NM_182918.3	146	gCg/gTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28599048	28599048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	239	718	0	ENST00000241453.7:c.2240C>T	p.Pro747Leu	p.P747L	ENST00000241453	NM_004119.2	747	cCg/cTg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111012	193111012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	37	258	0	ENST00000367435.3:c.545T>A	p.Ile182Asn	p.I182N	ENST00000367435	NM_024529.4	182	aTt/aAt																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38591739	38591739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	87	475	0	ENST00000299084.4:c.198G>T	p.Arg66Ser	p.R66S	ENST00000299084	NM_152594.2	66	agG/agT																																																																														
BLM	641	MSKCC	GRCh37	15	91354452	91354452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	30	404	2	ENST00000355112.3:c.3892G>T	p.Gly1298Trp	p.G1298W	ENST00000355112	NM_000057.2	1298	Ggg/Tgg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3652263	3652263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	156	868	0	ENST00000294008.3:c.806C>T	p.Ala269Val	p.A269V	ENST00000294008	NM_032444.2	269	gCc/gTc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118604	17118604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	52	707	0	ENST00000285071.4:c.1327G>A	p.Ala443Thr	p.A443T	ENST00000285071	NM_144997.5	443	Gca/Aca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220175	36220175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	49	741	0	ENST00000222270.7:c.4895C>T	p.Ala1632Val	p.A1632V	ENST00000222270	NM_014727.1	1632	gCt/gTt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940517	49940517	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151106960		P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1280	389	1012	0	ENST00000296474.3:c.526G>A	p.Asp176Asn	p.D176N	ENST00000296474	NM_002447.2	176	Gac/Aac																																																																														
AGO2	27161	MSKCC	GRCh37	8	141565999	141565999	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	69	474	0	ENST00000220592.5:c.1265del	p.Gly422AlafsTer46	p.G422Afs*46	ENST00000220592	NM_012154.3	422	gGc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	80	293	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	66	382	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	61	210	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	33	148	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1627369	1627369	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35936626		P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	156	672	0	ENST00000344749.5:c.355G>A	p.Gly119Ser	p.G119S	ENST00000344749	NM_001136139.2	119	Ggc/Agc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30314638	30314638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	99	496	1	ENST00000262643.3:c.1187C>T	p.Pro396Leu	p.P396L	ENST00000262643	NM_001238.2	396	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577506	7577796	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCAACCTAGGAGATAACACAGGCCCAAGATGAGGCCAGTGCGCCTTGGGGAGACCTGTGGCAAGCAGGGGAGGCCTTTTTTTTTTTTTTTTGAGATGGAATCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAAGCTCCACCGCCCAGGTTCACGCCATTCTCCTTCCTCAGC	CTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCAACCTAGGAGATAACACAGGCCCAAGATGAGGCCAGTGCGCCTTGGGGAGACCTGTGGCAAGCAGGGGAGGCCTTTTTTTTTTTTTTTTGAGATGGAATCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAAGCTCCACCGCCCAGGTTCACGCCATTCTCCTTCCTCAGC	-			P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	27	549	0	ENST00000269305.4:c.673-188_775del		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212269	36212269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	98	730	0	ENST00000222270.7:c.2020C>T	p.Pro674Ser	p.P674S	ENST00000222270	NM_014727.1	674	Cct/Tct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157510915	157510915	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	113	370	0	ENST00000346085.5:c.3689+1G>A		p.X1230_splice	ENST00000346085	NM_020732.3	1230																																																																															
STAG2	10735	MSKCC	GRCh37	X	123229269	123229269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	53	218	0	ENST00000218089.9:c.3753C>A	p.Phe1251Leu	p.F1251L	ENST00000218089	NM_001042749.1	1251	ttC/ttA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187791	11187791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	35	553	0	ENST00000361445.4:c.6106C>T	p.Arg2036Cys	p.R2036C	ENST00000361445	NM_004958.3	2036	Cgt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258748	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	47	475	0	ENST00000369535.4:c.34_35delinsAA	p.Gly12Asn	p.G12N	ENST00000369535	NM_002524.4	12	GGt/AAt																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245927406	245927406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	14	495	0	ENST00000388985.4:c.1122G>A	p.Met374Ile	p.M374I	ENST00000388985		374	atG/atA																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681437	88681437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35619497		P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	12	641	1	ENST00000372037.3:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000372037	NM_004329.2	443	Cgt/Tgt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	18	703	0	ENST00000543371.1:c.1480C>T	p.Pro494Ser	p.P494S	ENST00000543371	NM_001198531.1	494	Ccc/Tcc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310919	123310919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	10	532	0	ENST00000358487.5:c.509C>T	p.Pro170Leu	p.P170L	ENST00000358487	NM_000141.4	170	cCt/cTt																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195580	102195580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	26	468	0	ENST00000263464.3:c.340C>T	p.Pro114Ser	p.P114S	ENST00000263464	NM_001165.4	114	Cct/Tct																																																																														
ATM	472	MSKCC	GRCh37	11	108205756	108205756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	26	413	0	ENST00000278616.4:c.8071C>T	p.Arg2691Cys	p.R2691C	ENST00000278616	NM_000051.3	2691	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444513	49444513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	32	768	0	ENST00000301067.7:c.2858C>T	p.Pro953Leu	p.P953L	ENST00000301067	NM_003482.3	953	cCt/cTt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112915490	112915490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	25	587	0	ENST00000351677.2:c.889C>T	p.Pro297Ser	p.P297S	ENST00000351677	NM_002834.3	297	Ccc/Tcc																																																																														
POLE	5426	MSKCC	GRCh37	12	133256149	133256149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	47	579	0	ENST00000320574.5:c.512C>T	p.Ser171Phe	p.S171F	ENST00000320574	NM_006231.2	171	tCc/tTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28592666	28592666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	12	572	0	ENST00000241453.7:c.2479A>G	p.Ile827Val	p.I827V	ENST00000241453	NM_004119.2	827	Ata/Gta																																																																														
FLT1	2321	MSKCC	GRCh37	13	28880878	28880878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	16	617	0	ENST00000282397.4:c.3752C>T	p.Ala1251Val	p.A1251V	ENST00000282397	NM_002019.4	1251	gCc/gTc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610233	81610233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	10	447	0	ENST00000298171.2:c.1831C>T	p.Pro611Ser	p.P611S	ENST00000298171	NM_000369.2	611	Ccg/Tcg																																																																														
MGA	23269	MSKCC	GRCh37	15	41961276	41961277	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	36	504	1	ENST00000219905.7:c.184_185delinsAA	p.Gly62Lys	p.G62K	ENST00000219905	NM_001164273.1	62	GGg/AAg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226114	2226115	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	34	855	1	ENST00000326181.6:c.1811_1812delinsTT	p.Ala604Val	p.A604V	ENST00000326181	NM_032271.2	604	gCC/gTT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351344	89351344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	13	976	0	ENST00000301030.4:c.1606C>T	p.Pro536Ser	p.P536S	ENST00000301030	NM_001256183.1	536	Ccc/Tcc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256228	41256228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	41	452	0	ENST00000357654.3:c.352C>A	p.Leu118Ile	p.L118I	ENST00000357654	NM_007294.3	118	Cta/Ata																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617704	39617704	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	38	405	0	ENST00000262039.4:c.1888A>T	p.Lys630Ter	p.K630*	ENST00000262039	NM_002647.2	630	Aaa/Taa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098554	11098555	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	10	728	4	ENST00000344626.4:c.1072_1073delinsTT	p.Pro358Leu	p.P358L	ENST00000344626	NM_003072.3	358	CCg/TTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272242	15272242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	20	797	0	ENST00000263388.2:c.6197C>T	p.Pro2066Leu	p.P2066L	ENST00000263388	NM_000435.2	2066	cCc/cTc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753143	42753143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	56	805	0	ENST00000222329.4:c.1121C>T	p.Pro374Leu	p.P374L	ENST00000222329	NM_006494.2	374	cCa/cTa																																																																														
ALK	238	MSKCC	GRCh37	2	29451786	29451786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76870042		P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	21	740	0	ENST00000389048.3:c.2779G>A	p.Gly927Arg	p.G927R	ENST00000389048	NM_004304.4	927	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980775	40980775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	23	708	0	ENST00000373198.4:c.1711G>A	p.Ala571Thr	p.A571T	ENST00000373198	NM_133170.3	571	Gca/Aca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	9	364	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441448	52441449	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	15	530	0	ENST00000460680.1:c.403_404delinsTT	p.Pro135Leu	p.P135L	ENST00000460680	NM_004656.3	135	CCg/TTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55953799	55953799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	11	539	0	ENST00000263923.4:c.3637C>T	p.His1213Tyr	p.H1213Y	ENST00000263923	NM_002253.2	1213	Cat/Tat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	14	589	0				ENST00000310581	NM_198253.2																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56178071	56178071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	27	333	0	ENST00000399503.3:c.3044C>T	p.Pro1015Leu	p.P1015L	ENST00000399503	NM_005921.1	1015	cCt/cTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631302	117631302	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138376257		P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	22	530	1	ENST00000368508.3:c.6376C>T	p.Arg2126Trp	p.R2126W	ENST00000368508	NM_002944.2	2126	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658501	117658501	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	18	599	1	ENST00000368508.3:c.5082G>A	p.Trp1694Ter	p.W1694*	ENST00000368508	NM_002944.2	1694	tgG/tgA																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468158	50468158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	15	618	0	ENST00000331340.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331340	NM_006060.4	465	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81334756	81334756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	57	454	0	ENST00000222390.5:c.1960G>A	p.Glu654Lys	p.E654K	ENST00000222390	NM_000601.4	654	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140481412	140481412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	19	471	0	ENST00000288602.6:c.1396G>A	p.Gly466Arg	p.G466R	ENST00000288602	NM_004333.4	466	Gga/Aga																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538884	23538885	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	15	543	1	ENST00000380871.4:c.554_555delinsTT	p.Ser185Phe	p.S185F	ENST00000380871	NM_006167.3	185	tCC/tTT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492945	8492945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	22	524	0	ENST00000356435.5:c.2384C>T	p.Ser795Phe	p.S795F	ENST00000356435		795	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	37	676	1	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0047507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	37	676	1	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	266	197	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
STK11	6794	MSKCC	GRCh37	19	1220715	1220715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0047757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	297	577	0	ENST00000326873.7:c.733C>A	p.Leu245Ile	p.L245I	ENST00000326873	NM_000455.4	245	Ctc/Atc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943632	9943632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	290	393	0	ENST00000330684.3:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000330684	NM_001134407.1	437	Cgg/Tgg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256530	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0047757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	205	321	1	ENST00000369535.4:c.181_182delinsAG	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	CAa/AGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0047757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	431	362	0				ENST00000310581	NM_198253.2																																																																																
NSD1	64324	MSKCC	GRCh37	5	176638770	176638770	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	490	323	0	ENST00000439151.2:c.3370G>T	p.Glu1124Ter	p.E1124*	ENST00000439151	NM_022455.4	1124	Gaa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125789	47125789	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	166	215	0	ENST00000409792.3:c.5481G>A	p.Trp1827Ter	p.W1827*	ENST00000409792	NM_014159.6	1827	tgG/tgA																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053355	37053355	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0047757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	122	230	0	ENST00000231790.2:c.588+2T>C		p.X196_splice	ENST00000231790	NM_000249.3	196																																																																															
NF1	4763	MSKCC	GRCh37	17	29508803	29508803	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	95	213	1	ENST00000358273.4:c.730G>A	p.Glu244Lys	p.E244K	ENST00000358273	NM_001042492.2	244	Gaa/Aaa																																																																														
AXL	558	MSKCC	GRCh37	19	41758766	41758766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	333	619	0	ENST00000301178.4:c.1820G>A	p.Gly607Asp	p.G607D	ENST00000301178	NM_021913.4	607	gGt/gAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965706	93965706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	52	199	0	ENST00000369303.4:c.2222G>A	p.Gly741Glu	p.G741E	ENST00000369303	NM_004440.3	741	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120845	94120845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	175	284	0	ENST00000369303.4:c.206G>A	p.Arg69Gln	p.R69Q	ENST00000369303	NM_004440.3	69	cGa/cAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436016	56436016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	273	429	0	ENST00000407977.2:c.1121C>T	p.Pro374Leu	p.P374L	ENST00000407977		374	cCc/cTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111519	8111519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	120	406	0	ENST00000346208.3:c.1005C>A	p.Asp335Glu	p.D335E	ENST00000346208		335	gaC/gaA																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262905	46262905	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	99	252	0	ENST00000371998.3:c.1078C>T	p.Arg360Ter	p.R360*	ENST00000371998		360	Cga/Tga																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36653561	36653561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	375	432	0	ENST00000244741.5:c.479C>T	p.Ser160Phe	p.S160F	ENST00000244741	NM_000389.4	160	tCc/tTc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31429584	31429584	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	101	222	0	ENST00000344624.3:c.3214C>T	p.Pro1072Ser	p.P1072S	ENST00000344624		1072	Ccg/Tcg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28597513	28597513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	198	305	0	ENST00000241453.7:c.2392G>A	p.Gly798Arg	p.G798R	ENST00000241453	NM_004119.2	798	Gga/Aga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390793	139390793	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	415	833	0	ENST00000277541.6:c.7398delG	p.Ser2467ArgfsTer10	p.S2467Rfs*10	ENST00000277541	NM_017617.3	2466	acG/ac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	362	394	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	49050933	49050933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	144	216	0	ENST00000267163.4:c.2617A>G	p.Lys873Glu	p.K873E	ENST00000267163	NM_000321.2	873	Aaa/Gaa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073797	8073797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	127	238	0	ENST00000377482.5:c.862C>T	p.Pro288Ser	p.P288S	ENST00000377482	NM_018948.3	288	Ccc/Tcc																																																																														
ATM	472	MSKCC	GRCh37	11	108206617	108206617	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	129	191	0	ENST00000278616.4:c.8197C>T	p.Gln2733Ter	p.Q2733*	ENST00000278616	NM_000051.3	2733	Cag/Tag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435133	110435133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	355	747	0	ENST00000375856.3:c.3268C>T	p.Pro1090Ser	p.P1090S	ENST00000375856	NM_003749.2	1090	Ccc/Tcc																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022991	33022991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	87	345	0	ENST00000300177.4:c.100C>T	p.Pro34Ser	p.P34S	ENST00000300177	NM_001191322.1	34	Ccc/Tcc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828095	72828095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	286	528	0	ENST00000268489.5:c.8486A>G	p.Lys2829Arg	p.K2829R	ENST00000268489	NM_006885.3	2829	aAg/aGg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965526	25965526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	261	419	0	ENST00000435504.4:c.3680C>T	p.Ala1227Val	p.A1227V	ENST00000435504		1227	gCt/gTt																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872917	136872918	+	missense_variant	Missense_Mutation	DNP	AA	AA	GT			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	144	255	0	ENST00000241393.3:c.580_581delinsAC	p.Leu194Thr	p.L194T	ENST00000241393	NM_003467.2	194	TTg/ACg																																																																														
PAK7	0	MSKCC	GRCh37	20	9520241	9520241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	173	381	0	ENST00000353224.5:c.2028C>G	p.Phe676Leu	p.F676L	ENST00000353224	NM_177990.2	676	ttC/ttG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420070	41420070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	169	318	0	ENST00000373198.4:c.251C>T	p.Ser84Phe	p.S84F	ENST00000373198	NM_133170.3	84	tCt/tTt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555149	106555149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	87	377	0	ENST00000369096.4:c.2266G>A	p.Glu756Lys	p.E756K	ENST00000369096	NM_001198.3	756	Gag/Aag																																																																														
SESN1	27244	MSKCC	GRCh37	6	109319927	109319927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	55	378	0	ENST00000436639.2:c.761C>T	p.Ser254Phe	p.S254F	ENST00000436639	NM_014454.2	254	tCc/tTc																																																																														
FYN	2534	MSKCC	GRCh37	6	112020760	112020760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	154	216	0	ENST00000368678.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000368678		271	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	264	391	6				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27058033	27058033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	48	363	0	ENST00000324856.7:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000324856	NM_006015.4	581	Cag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	221	389	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653860	89653860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	12	219	0	ENST00000371953.3:c.158T>C	p.Val53Ala	p.V53A	ENST00000371953	NM_000314.4	53	gTa/gCa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481882	56481882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	127	525	0	ENST00000267101.3:c.810C>G	p.Phe270Leu	p.F270L	ENST00000267101	NM_001982.3	270	ttC/ttG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	165	729	0	ENST00000269305.4:c.470T>A	p.Val157Asp	p.V157D	ENST00000269305	NM_001126112.2	157	gTc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	140	581	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
AXL	558	MSKCC	GRCh37	19	41743919	41743919	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201003955		P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	47	788	1	ENST00000301178.4:c.854C>T	p.Ser285Leu	p.S285L	ENST00000301178	NM_021913.4	285	tCg/tTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569841	95569841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	16	231	0	ENST00000343455.3:c.3892C>T	p.Leu1298Phe	p.L1298F	ENST00000343455	NM_177438.2	1298	Ctt/Ttt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107100	27107366	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GCTGCTTGCCTTGGCCAAGGTGGACGAGAACCACTCAGAGTTTACTCTGTACGAATCACGGCTGTTGGACATCTCGGTATCACCGTTGATGAACTCATTGGTTTCACAAGTCATTTGTGATGTACTGTTTTTGATTGGCCAGTCATGACAGCCGTGGGACACCTCCCCCCCCCGTGTGTGTGTGCGTGTGTGGAGAACTTAGAAACTGACTGTTGCCCTTTATTTATGCAAAACCACCTCAGAATCCAGTTTACCCTGTGCTGTCCA	GCTGCTTGCCTTGGCCAAGGTGGACGAGAACCACTCAGAGTTTACTCTGTACGAATCACGGCTGTTGGACATCTCGGTATCACCGTTGATGAACTCATTGGTTTCACAAGTCATTTGTGATGTACTGTTTTTGATTGGCCAGTCATGACAGCCGTGGGACACCTCCCCCCCCCGTGTGTGTGTGCGTGTGTGGAGAACTTAGAAACTGACTGTTGCCCTTTATTTATGCAAAACCACCTCAGAATCCAGTTTACCCTGTGCTGTCCA	-			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	76	418	0	ENST00000324856.7:c.6714_*122del		p.*2238*	ENST00000324856	NM_006015.4	2237																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343179	118343179	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	57	188	0	ENST00000534358.1:c.1307del	p.Pro436LeufsTer8	p.P436Lfs*8	ENST00000534358	NM_005933.3	435	gaC/ga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362557	118362557	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	107	326	0	ENST00000534358.1:c.4918G>C	p.Glu1640Gln	p.E1640Q	ENST00000534358	NM_005933.3	1640	Gaa/Caa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21630818	21630818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	25	339	0	ENST00000421138.2:c.786G>C	p.Leu262Phe	p.L262F	ENST00000421138		262	ttG/ttC																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38591671	38591671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	145	419	0	ENST00000299084.4:c.130G>T	p.Val44Phe	p.V44F	ENST00000299084	NM_152594.2	44	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	219	538	0	ENST00000269305.4:c.589del	p.Val197TrpfsTer50	p.V197Wfs*50	ENST00000269305	NM_001126112.2	197	Gtg/tg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15995247	15995247	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	37	308	0	ENST00000268712.3:c.2946G>C	p.Gln982His	p.Q982H	ENST00000268712	NM_006311.3	982	caG/caC																																																																														
INSR	3643	MSKCC	GRCh37	19	7184568	7184568	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	33	426	0	ENST00000302850.5:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000302850	NM_000208.2	245	Cag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267229	41267229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	23	294	0	ENST00000349496.5:c.813G>A	p.Met271Ile	p.M271I	ENST00000349496	NM_001904.3	271	atG/atA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517751	187517751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	12	183	0	ENST00000441802.2:c.12943A>G	p.Asn4315Asp	p.N4315D	ENST00000441802	NM_005245.3	4315	Aac/Gac																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753933	57753933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	35	280	0	ENST00000274289.3:c.691G>C	p.Glu231Gln	p.E231Q	ENST00000274289	NM_006622.3	231	Gaa/Caa																																																																														
HGF	3082	MSKCC	GRCh37	7	81335642	81335642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	19	243	1	ENST00000222390.5:c.1718G>A	p.Gly573Asp	p.G573D	ENST00000222390	NM_000601.4	573	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026989-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			307	93	309	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0026989-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	326	828	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482607	56482607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026989-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			887	154	527	0	ENST00000267101.3:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000267101	NM_001982.3	355	aCc/aTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125088	46125089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026989-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			201	67	172	0	ENST00000334344.6:c.277dup	p.Tyr93LeufsTer18	p.Y93Lfs*18	ENST00000334344	NM_152641.2	92	tat/taTt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986656	36986657	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026989-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			144	35	108	0	ENST00000354822.5:c.1032dup	p.Ala345ArgfsTer94	p.A345Rfs*94	ENST00000354822	NM_001079668.2	344	-/C																																																																														
EZH1	2145	MSKCC	GRCh37	17	40870055	40870055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026989-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			394	71	315	0	ENST00000428826.2:c.962G>A	p.Arg321His	p.R321H	ENST00000428826		321	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431031	49431031	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026989-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	83	636	1	ENST00000301067.7:c.10108del	p.Gln3370SerfsTer22	p.Q3370Sfs*22	ENST00000301067	NM_003482.3	3370	Cag/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	240	530	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
REL	5966	MSKCC	GRCh37	2	61147751	61147751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	79	166	0	ENST00000295025.8:c.1061T>C	p.Ile354Thr	p.I354T	ENST00000295025	NM_002908.2	354	aTt/aCt																																																																														
APC	324	MSKCC	GRCh37	5	112176821	112176821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	18	252	1	ENST00000257430.4:c.5530C>T	p.His1844Tyr	p.H1844Y	ENST00000257430	NM_000038.5	1844	Cat/Tat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715435	117715435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	18	243	0	ENST00000368508.3:c.1054A>G	p.Asn352Asp	p.N352D	ENST00000368508	NM_002944.2	352	Aac/Gac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268906	55268906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	79	540	0	ENST00000275493.2:c.2972G>A	p.Ser991Asn	p.S991N	ENST00000275493	NM_005228.3	991	aGt/aAt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525867	148525890	+	inframe_deletion	In_Frame_Del	DEL	TCTCTTTCTTCAGGATCGTCTCCA	TCTCTTTCTTCAGGATCGTCTCCA	-			P-0046745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	72	222	0	ENST00000320356.2:c.567_590del	p.Asp189_Arg196del	p.D189_R196del	ENST00000320356	NM_004456.4	189	gaTGGAGACGATCCTGAAGAAAGAGAa/gaa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412962	63412962	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	80	658	0	ENST00000330258.3:c.205C>G	p.Leu69Val	p.L69V	ENST00000330258	NM_152424.3	69	Ctg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047189-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	66	341	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0047189-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			154	29	458	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0047189-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			203	55	709	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0047189-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	53	439	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0047189-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	53	439	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871640	35871640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047189-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	41	314	0	ENST00000216797.5:c.866A>G	p.Tyr289Cys	p.Y289C	ENST00000216797	NM_020529.2	289	tAt/tGt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417834	138417834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	122	386	0	ENST00000289153.2:c.1685G>A	p.Arg562Gln	p.R562Q	ENST00000289153	NM_006219.2	562	cGa/cAa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047471-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	80	327	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984450	201984450	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0047471-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	116	438	0	ENST00000359651.3:c.1115G>T	p.Ter372LeuextTer43	p.*372Lext*43	ENST00000359651		372	tGa/tTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70446338	70446345	+	frameshift_variant	Frame_Shift_Ins	INS	GCGATGAT	GCGATGAT	TTCACGTTCTGGAAA			P-0047471-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	31	453	0	ENST00000373644.4:c.5278_5285delinsTTCACGTTCTGGAAA	p.Ala1760PhefsTer12	p.A1760Ffs*12	ENST00000373644	NM_030625.2	1760	GCGATGATg/TTCACGTTCTGGAAAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047471-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	103	456	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1646421	1646421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047471-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	131	481	0	ENST00000344749.5:c.78C>G	p.Phe26Leu	p.F26L	ENST00000344749	NM_001136139.2	26	ttC/ttG																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182292	38182292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047471-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	10	439	1	ENST00000396334.3:c.728G>A	p.Ser243Asn	p.S243N	ENST00000396334	NM_002468.4	243	aGc/aAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141051	55141051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047471-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	43	301	0	ENST00000257290.5:c.1697G>T	p.Ser566Ile	p.S566I	ENST00000257290	NM_006206.4	566	aGc/aTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295407	1295407	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0047471-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			130	35	119	0				ENST00000310581	NM_198253.2																																																																																
HIST1H3J	8356	MSKCC	GRCh37	6	27858201	27858201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047471-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	87	489	1	ENST00000359303.2:c.370G>T	p.Asp124Tyr	p.D124Y	ENST00000359303	NM_003535.2	124	Gac/Tac																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005245	150005245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047471-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			145	63	352	0	ENST00000253339.5:c.980G>C	p.Arg327Thr	p.R327T	ENST00000253339		327	aGa/aCa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730074	41730074	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047471-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	91	423	0	ENST00000242208.4:c.455G>T	p.Arg152Leu	p.R152L	ENST00000242208	NM_002192.2	152	cGt/cTt																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29195970	29195970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047471-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	129	709	0	ENST00000240100.2:c.628C>T	p.His210Tyr	p.H210Y	ENST00000240100	NM_001394.6	210	Cat/Tat																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0047619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	337	713	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	370	763	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260900	16260900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	275	401	0	ENST00000375759.3:c.8165C>T	p.Pro2722Leu	p.P2722L	ENST00000375759	NM_015001.2	2722	cCa/cTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	314	399	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
JUN	3725	MSKCC	GRCh37	1	59247894	59247894	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	364	688	2	ENST00000371222.2:c.849del	p.Val284Ter	p.V284*	ENST00000371222	NM_002228.3	283	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	221	264	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	420	314	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948484	71948484	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1358	475	867	0	ENST00000298229.2:c.3201del	p.Ser1068AlafsTer63	p.S1068Afs*63	ENST00000298229	NM_001567.3	1066	Ccc/cc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373709	118373709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	166	273	0	ENST00000534358.1:c.7102C>A	p.Leu2368Ile	p.L2368I	ENST00000534358	NM_005933.3	2368	Ctc/Atc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	159	305	0	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628716	21628716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	94	334	0	ENST00000421138.2:c.992C>T	p.Thr331Met	p.T331M	ENST00000421138		331	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	141	299	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243365	46243365	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs76994389		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	80	173	0	ENST00000334344.6:c.1718C>T	p.Thr573Met	p.T573M	ENST00000334344	NM_152641.2	573	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421039	49421039	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	281	443	0	ENST00000301067.7:c.14710C>T	p.Arg4904Ter	p.R4904*	ENST00000301067	NM_003482.3	4904	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434829	49434829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1217	497	772	1	ENST00000301067.7:c.6724G>A	p.Asp2242Asn	p.D2242N	ENST00000301067	NM_003482.3	2242	Gac/Aac																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885145	111885145	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	284	491	0	ENST00000341259.2:c.1038delG	p.Leu347CysfsTer26	p.L347Cfs*26	ENST00000341259	NM_005475.2	345	Ggg/gg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924349	112924349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	363	628	1	ENST00000351677.2:c.1295C>T	p.Pro432Leu	p.P432L	ENST00000351677	NM_002834.3	432	cCt/cTt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549170	21549170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	337	621	1	ENST00000382592.4:c.3106G>A	p.Ala1036Thr	p.A1036T	ENST00000382592	NM_014572.2	1036	Gca/Aca																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562919	21562919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	466	754	0	ENST00000382592.4:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000382592	NM_014572.2	334	Cgc/Tgc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528182	103528182	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	112	279	0	ENST00000355739.4:c.3490A>G	p.Thr1164Ala	p.T1164A	ENST00000355739	NM_000123.3	1164	Acc/Gcc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68353863	68353863	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	146	236	0	ENST00000487270.1:c.698A>T	p.Lys233Met	p.K233M	ENST00000487270	NM_133509.3	233	aAg/aTg																																																																														
CD276	80381	MSKCC	GRCh37	15	73994829	73994829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	168	286	1	ENST00000318443.5:c.313G>A	p.Ala105Thr	p.A105T	ENST00000318443	NM_001024736.1	105	Gca/Aca																																																																														
AXIN1	8312	MSKCC	GRCh37	16	338151	338153	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	357	592	0	ENST00000262320.3:c.2558_2560del	p.Lys853del	p.K853del	ENST00000262320	NM_003502.3	853	aAGAtc/atc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222500	2222500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	486	774	1	ENST00000326181.6:c.694C>T	p.Arg232Trp	p.R232W	ENST00000326181	NM_032271.2	232	Cgg/Tgg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225603	2225603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	400	651	2	ENST00000326181.6:c.1606G>A	p.Gly536Ser	p.G536S	ENST00000326181	NM_032271.2	536	Ggc/Agc																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349186	11349186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	69	125	2	ENST00000332029.2:c.150del	p.Gly51AlafsTer34	p.G51Afs*34	ENST00000332029	NM_003745.1	50	ccC/cc																																																																														
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	249	429	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991704	72991704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	250	282	0	ENST00000268489.5:c.2341G>A	p.Ala781Thr	p.A781T	ENST00000268489	NM_006885.3	781	Gcg/Acg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993624	72993624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	328	634	0	ENST00000268489.5:c.421G>A	p.Ala141Thr	p.A141T	ENST00000268489	NM_006885.3	141	Gcg/Acg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89352037	89352037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138353708		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	383	578	1	ENST00000301030.4:c.913G>A	p.Ala305Thr	p.A305T	ENST00000301030	NM_001256183.1	305	Gca/Aca																																																																														
FANCA	2175	MSKCC	GRCh37	16	89846290	89846290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	283	474	1	ENST00000389301.3:c.1702G>A	p.Val568Ile	p.V568I	ENST00000389301	NM_000135.2	568	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578425	7578425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	463	735	0	ENST00000269305.4:c.505A>G	p.Met169Val	p.M169V	ENST00000269305	NM_001126112.2	169	Atg/Gtg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	119	253	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	297	562	10	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
NF1	4763	MSKCC	GRCh37	17	29553493	29553493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	346	619	0	ENST00000358273.4:c.2042G>A	p.Arg681Gln	p.R681Q	ENST00000358273	NM_001042492.2	681	cGa/cAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37649111	37649111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	138	234	0	ENST00000447079.4:c.2216G>A	p.Gly739Asp	p.G739D	ENST00000447079	NM_015083.1	739	gGc/gAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581268	48581268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	226	532	0	ENST00000342988.3:c.572C>T	p.Ser191Leu	p.S191L	ENST00000342988	NM_005359.5	191	tCg/tTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2194571	2194571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	216	301	0	ENST00000398665.3:c.646T>C	p.Tyr216His	p.Y216H	ENST00000398665	NM_032482.2	216	Tac/Cac																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222313	2222313	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1194	477	732	0	ENST00000398665.3:c.3145A>G	p.Ile1049Val	p.I1049V	ENST00000398665	NM_032482.2	1049	Atc/Gtc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110607	4110607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	447	563	0	ENST00000262948.5:c.350G>A	p.Arg117His	p.R117H	ENST00000262948	NM_030662.3	117	cGc/cAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	318	627	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213611	36213611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1262	484	818	0	ENST00000222270.7:c.2713G>A	p.Ala905Thr	p.A905T	ENST00000222270	NM_014727.1	905	Gcc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224339	36224340	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	340	819	4	ENST00000222270.7:c.6895dupC	p.Arg2299ProfsTer4	p.R2299Pfs*4	ENST00000222270	NM_014727.1	2297	gcc/gCcc																																																																														
ERF	2077	MSKCC	GRCh37	19	42754583	42754583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	427	750	2	ENST00000222329.4:c.157G>A	p.Gly53Arg	p.G53R	ENST00000222329	NM_006494.2	53	Ggg/Agg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902182	50902182	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	454	708	0	ENST00000440232.2:c.74A>G	p.Asp25Gly	p.D25G	ENST00000440232	NM_002691.3	25	gAt/gGt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085995	16085995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	256	417	0	ENST00000281043.3:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000281043	NM_005378.4	391	Cgc/Tgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25497874	25497874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	384	634	0	ENST00000264709.3:c.575C>A	p.Ala192Glu	p.A192E	ENST00000264709	NM_175629.2	192	gCg/gAg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25497944	25497944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	282	483	0	ENST00000264709.3:c.505C>T	p.Arg169Trp	p.R169W	ENST00000264709	NM_175629.2	169	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	29446389	29446389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	410	697	0	ENST00000389048.3:c.3178C>T	p.Arg1060Cys	p.R1060C	ENST00000389048	NM_004304.4	1060	Cgc/Tgc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	147	312	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098891	178098892	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	186	350	0	ENST00000397062.3:c.153_154del	p.Lys53ThrfsTer2	p.K53Tfs*2	ENST00000397062	NM_006164.4	51	caGAaa/caaa																																																																														
ERG	2078	MSKCC	GRCh37	21	39772564	39772564	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	136	218	0	ENST00000288319.7:c.677delG	p.Gly226ValfsTer65	p.G226Vfs*65	ENST00000288319	NM_182918.3	226	gGt/gt																																																																														
ERG	2078	MSKCC	GRCh37	21	39795373	39795373	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	314	607	0	ENST00000288319.7:c.347del	p.Pro116GlnfsTer3	p.P116Qfs*3	ENST00000288319	NM_182918.3	116	cCa/ca																																																																														
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	409	707	1	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	305	244	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933438	49933438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	408	630	3	ENST00000296474.3:c.2752delC	p.Leu918CysfsTer18	p.L918Cfs*18	ENST00000296474	NM_002447.2	918	Ctg/tg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439887	52439887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	285	403	0	ENST00000460680.1:c.825G>T	p.Lys275Asn	p.K275N	ENST00000460680	NM_004656.3	275	aaG/aaT																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799959	72799959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	61	235	0	ENST00000325599.8:c.1210G>A	p.Ala404Thr	p.A404T	ENST00000325599	NM_018130.2	404	Gcc/Acc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169999051	169999051	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	85	145	0	ENST00000295797.4:c.980G>T	p.Arg327Ile	p.R327I	ENST00000295797	NM_002740.5	327	aGa/aTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	41	170	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509127	66509127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145126637		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	38	181	0	ENST00000273854.3:c.200G>A	p.Arg67His	p.R67H	ENST00000273854	NM_004439.5	67	cGc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540670	187540670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	172	279	0	ENST00000441802.2:c.7070C>T	p.Thr2357Met	p.T2357M	ENST00000441802	NM_005245.3	2357	aCg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1280299	1280299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	513	751	0	ENST00000310581.5:c.1924G>T	p.Ala642Ser	p.A642S	ENST00000310581	NM_198253.2	642	Gcc/Tcc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	81	190	1	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753348	57753348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	130	293	0	ENST00000274289.3:c.776G>T	p.Cys259Phe	p.C259F	ENST00000274289	NM_006622.3	259	tGt/tTt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	228	340	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564300	86564300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	190	376	0	ENST00000274376.6:c.32G>A	p.Gly11Asp	p.G11D	ENST00000274376	NM_002890.2	11	gGc/gAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047631	180047631	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	289	456	0	ENST00000261937.6:c.2384T>A	p.Leu795His	p.L795H	ENST00000261937	NM_182925.4	795	cTc/cAc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956682	93956682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	111	241	0	ENST00000369303.4:c.2554G>A	p.Gly852Ser	p.G852S	ENST00000369303	NM_004440.3	852	Ggt/Agt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554937	106554937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	256	387	1	ENST00000369096.4:c.2054G>A	p.Arg685Gln	p.R685Q	ENST00000369096	NM_001198.3	685	cGg/cAg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202370	138202370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	275	553	1	ENST00000237289.4:c.2287C>T	p.Arg763Trp	p.R763W	ENST00000237289	NM_001270507.1	763	Cgg/Tgg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129307	152129307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	400	666	1	ENST00000206249.3:c.260C>T	p.Ala87Val	p.A87V	ENST00000206249	NM_000125.3	87	gCg/gTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	717	609	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55214367	55214367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778252		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	248	532	0	ENST00000275493.2:c.493C>T	p.Arg165Trp	p.R165W	ENST00000275493	NM_005228.3	165	Cgg/Tgg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526647	106526648	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	144	328	0	ENST00000359195.3:c.2946_2947del	p.Arg982SerfsTer8	p.R982Sfs*8	ENST00000359195	NM_002649.2	980	aaAGag/aaag																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	431	766	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	247	323	12	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950480	68950481	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	163	288	0	ENST00000288368.4:c.798dup	p.Leu267SerfsTer4	p.L267Sfs*4	ENST00000288368	NM_024870.2	264	-/T																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	421	753	3	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
JAK2	3717	MSKCC	GRCh37	9	5064997	5064997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	106	217	0	ENST00000381652.3:c.1171G>A	p.Ala391Thr	p.A391T	ENST00000381652	NM_004972.3	391	Gcc/Acc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98242281	98242281	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	221	430	0	ENST00000331920.6:c.1037del	p.Thr346LysfsTer21	p.T346Kfs*21	ENST00000331920	NM_000264.3	346	aCa/aa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969407	44969407	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	180	152	0	ENST00000377967.4:c.4093del	p.Thr1365GlnfsTer11	p.T1365Qfs*11	ENST00000377967	NM_021140.2	1363	cgA/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	375	292	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59857648	59857648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	63	243	0	ENST00000259008.2:c.1909G>T	p.Ala637Ser	p.A637S	ENST00000259008	NM_032043.2	637	Gct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578470	7578471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	505	821	0	ENST00000269305.4:c.459dup	p.Gly154ArgfsTer27	p.G154Rfs*27	ENST00000269305	NM_001126112.2	153	-/C																																																																														
CBL	867	MSKCC	GRCh37	11	119148876	119148876	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	132	169	0	ENST00000264033.4:c.1096G>T	p.Glu366Ter	p.E366*	ENST00000264033	NM_005188.3	366	Gaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307593	118307593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	242	757	0	ENST00000534358.1:c.366C>G	p.Ile122Met	p.I122M	ENST00000534358	NM_005933.3	122	atC/atG																																																																														
NUF2	83540	MSKCC	GRCh37	1	163317592	163317592	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	47	219	1	ENST00000271452.3:c.988G>T	p.Glu330Ter	p.E330*	ENST00000271452	NM_145697.2	330	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106230	27106230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	163	464	0	ENST00000324856.7:c.5841G>T	p.Gln1947His	p.Q1947H	ENST00000324856	NM_006015.4	1947	caG/caT																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551366	150551366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	549	906	0	ENST00000369026.2:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000369026	NM_021960.4	214	cGa/cAa																																																																														
RET	5979	MSKCC	GRCh37	10	43606880	43606880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	361	836	1	ENST00000355710.3:c.1489C>A	p.Gln497Lys	p.Q497K	ENST00000355710	NM_020975.4	497	Cag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343396	118343396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	72	276	0	ENST00000534358.1:c.1522G>A	p.Glu508Lys	p.E508K	ENST00000534358	NM_005933.3	508	Gaa/Aaa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435232	110435232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	287	431	0	ENST00000375856.3:c.3169G>T	p.Gly1057Cys	p.G1057C	ENST00000375856	NM_003749.2	1057	Ggc/Tgc																																																																														
AKT1	207	MSKCC	GRCh37	14	105242086	105242086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	214	711	0	ENST00000349310.3:c.338A>T	p.Gln113Leu	p.Q113L	ENST00000349310	NM_001014432.1	113	cAg/cTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838182	89838182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	169	419	0	ENST00000389301.3:c.2055G>T	p.Arg685Ser	p.R685S	ENST00000389301	NM_000135.2	685	agG/agT																																																																														
RARA	5914	MSKCC	GRCh37	17	38511619	38511619	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	210	641	0	ENST00000254066.5:c.1117A>G	p.Met373Val	p.M373V	ENST00000254066	NM_000964.3	373	Atg/Gtg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40457655	40457655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	190	627	0	ENST00000345506.4:c.1408G>A	p.Val470Ile	p.V470I	ENST00000345506	NM_003152.3	470	Gtc/Atc																																																																														
CIC	23152	MSKCC	GRCh37	19	42795136	42795136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	437	885	0	ENST00000575354.2:c.2216C>T	p.Ser739Leu	p.S739L	ENST00000575354	NM_015125.3	739	tCa/tTa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46603714	46603714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	317	562	0	ENST00000263734.3:c.1071C>G	p.Asp357Glu	p.D357E	ENST00000263734	NM_001430.4	357	gaC/gaG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713349	40713349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	152	633	0	ENST00000373198.4:c.4166G>C	p.Arg1389Thr	p.R1389T	ENST00000373198	NM_133170.3	1389	aGg/aCg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733243	40733244	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	117	446	0	ENST00000373198.4:c.3562_3563delinsAG	p.Gln1188Arg	p.Q1188R	ENST00000373198	NM_133170.3	1188	CAg/AGg																																																																														
ATR	545	MSKCC	GRCh37	3	142204115	142204115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	87	286	0	ENST00000350721.4:c.6088G>T	p.Ala2030Ser	p.A2030S	ENST00000350721	NM_001184.3	2030	Gcg/Tcg																																																																														
KIT	3815	MSKCC	GRCh37	4	55564561	55564561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	138	432	0	ENST00000288135.5:c.449G>T	p.Gly150Val	p.G150V	ENST00000288135	NM_000222.2	150	gGg/gTg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459827	149459827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	212	769	0	ENST00000286301.3:c.380G>A	p.Cys127Tyr	p.C127Y	ENST00000286301	NM_005211.3	127	tGt/tAt																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271325	26271326	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	285	480	0	ENST00000305910.3:c.287_288delinsAG	p.Ala96Glu	p.A96E	ENST00000305910	NM_003534.2	96	gCC/gAG																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163592	32163592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1202	362	588	0	ENST00000375023.3:c.5634G>T	p.Gln1878His	p.Q1878H	ENST00000375023	NM_004557.3	1878	caG/caT																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202433	138202433	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	207	600	1	ENST00000237289.4:c.2350C>T	p.Gln784Ter	p.Q784*	ENST00000237289	NM_001270507.1	784	Cag/Tag																																																																														
ETV1	2115	MSKCC	GRCh37	7	13978873	13978873	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	64	264	0	ENST00000405192.2:c.236-2A>T		p.X79_splice	ENST00000405192	NM_001163147.1	79																																																																															
HGF	3082	MSKCC	GRCh37	7	81355274	81355274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	64	230	0	ENST00000222390.5:c.1100C>A	p.Thr367Asn	p.T367N	ENST00000222390	NM_000601.4	367	aCc/aAc																																																																														
MET	4233	MSKCC	GRCh37	7	116398637	116398637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	83	316	0	ENST00000397752.3:c.2227A>G	p.Ile743Val	p.I743V	ENST00000397752	NM_000245.2	743	Att/Gtt																																																																														
BRAF	673	MSKCC	GRCh37	7	140501222	140501222	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	163	294	0	ENST00000288602.6:c.850G>C	p.Asp284His	p.D284H	ENST00000288602	NM_004333.4	284	Gac/Cac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389324	8389324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	168	416	0	ENST00000356435.5:c.4294C>T	p.Leu1432Phe	p.L1432F	ENST00000356435		1432	Ctc/Ttc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499712	8499712	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	273	410	0	ENST00000356435.5:c.2257A>T	p.Arg753Trp	p.R753W	ENST00000356435		753	Agg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636827	8636827	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	155	313	0	ENST00000356435.5:c.82C>G	p.Arg28Gly	p.R28G	ENST00000356435		28	Cga/Gga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410144	63410144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	65	705	0	ENST00000330258.3:c.3023C>A	p.Pro1008Gln	p.P1008Q	ENST00000330258	NM_152424.3	1008	cCa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76920251	76920251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	70	231	0	ENST00000373344.5:c.3826C>T	p.Leu1276Phe	p.L1276F	ENST00000373344	NM_000489.3	1276	Ctt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	284	591	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
ATM	472	MSKCC	GRCh37	11	108188136	108188136	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1800060		P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	45	214	0	ENST00000278616.4:c.6235G>A	p.Val2079Ile	p.V2079I	ENST00000278616	NM_000051.3	2079	Gtc/Atc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	49	185	0	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																																																														
RET	5979	MSKCC	GRCh37	10	43609990	43609990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	176	817	1	ENST00000355710.3:c.1942G>A	p.Val648Ile	p.V648I	ENST00000355710	NM_020975.4	648	Gtc/Atc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56494908	56494908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	159	502	0	ENST00000267101.3:c.3265C>T	p.Arg1089Trp	p.R1089W	ENST00000267101	NM_001982.3	1089	Cgg/Tgg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623858	28623858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	74	389	0	ENST00000241453.7:c.796G>A	p.Glu266Lys	p.E266K	ENST00000241453	NM_004119.2	266	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097796	27097796	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	246	351	0	ENST00000324856.7:c.3385A>T	p.Lys1129Ter	p.K1129*	ENST00000324856	NM_006015.4	1129	Aag/Tag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28883002	28883002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115595062		P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	408	410	0	ENST00000282397.4:c.3698C>T	p.Pro1233Leu	p.P1233L	ENST00000282397	NM_002019.4	1233	cCg/cTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701190	43701190	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	136	445	0	ENST00000382044.4:c.5505G>A	p.Trp1835Ter	p.W1835*	ENST00000382044	NM_001141980.1	1835	tgG/tgA																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215597	5215597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	164	718	0	ENST00000357368.4:c.4106G>A	p.Ser1369Asn	p.S1369N	ENST00000357368	NM_002850.3	1369	aGc/aAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	224	360	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	114	196	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174113	112174113	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	115	181	0	ENST00000257430.4:c.2825del	p.Asn942IlefsTer13	p.N942Ifs*13	ENST00000257430	NM_000038.5	941	gAa/ga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866393	37866393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	881	727	0	ENST00000269571.5:c.698C>T	p.Thr233Ile	p.T233I	ENST00000269571		233	aCt/aTt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	294	557	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579568	7579568	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	655	487	0	ENST00000269305.4:c.119del	p.Met40ArgfsTer4	p.M40Rfs*4	ENST00000269305	NM_001126112.2	40	aTg/ag																																																																														
CASP8	841	MSKCC	GRCh37	2	202149865	202149865	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	46	372	0	ENST00000358485.4:c.1306G>T	p.Glu436Ter	p.E436*	ENST00000358485	NM_001080125.1	436	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	223	322	0				ENST00000310581	NM_198253.2																																																																																
PAK7	0	MSKCC	GRCh37	20	9546919	9546919	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	143	437	0	ENST00000353224.5:c.1103C>G	p.Ser368Ter	p.S368*	ENST00000353224	NM_177990.2	368	tCa/tGa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725039	162725039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1521	133	385	1	ENST00000367921.3:c.511G>A	p.Asp171Asn	p.D171N	ENST00000367921	NM_006182.2	171	Gac/Aac																																																																														
EP300	2033	MSKCC	GRCh37	22	41551100	41551100	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	189	435	0	ENST00000263253.7:c.3244C>T	p.Gln1082Ter	p.Q1082*	ENST00000263253	NM_001429.3	1082	Cag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437669	52437669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	265	693	0	ENST00000460680.1:c.1492G>C	p.Glu498Gln	p.E498Q	ENST00000460680	NM_004656.3	498	Gag/Cag																																																																														
NF2	4771	MSKCC	GRCh37	22	30069387	30069387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	232	625	1	ENST00000338641.4:c.1252C>T	p.Arg418Cys	p.R418C	ENST00000338641	NM_000268.3	418	Cgc/Tgc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185023	32185023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	267	638	0	ENST00000375023.3:c.1645G>A	p.Glu549Lys	p.E549K	ENST00000375023	NM_004557.3	549	Gag/Aag																																																																														
SESN2	83667	MSKCC	GRCh37	1	28607258	28607258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1791	236	566	2	ENST00000253063.3:c.1388G>A	p.Arg463His	p.R463H	ENST00000253063	NM_031459.4	463	cGc/cAc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739322	46739322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	145	381	0	ENST00000371975.4:c.1513C>G	p.Leu505Val	p.L505V	ENST00000371975	NM_003579.3	505	Ctg/Gtg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946892	71946892	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	310	722	1	ENST00000298229.2:c.2741C>T	p.Ser914Leu	p.S914L	ENST00000298229	NM_001567.3	914	tCa/tTa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946937	71946937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	324	869	0	ENST00000298229.2:c.2786C>T	p.Ser929Phe	p.S929F	ENST00000298229	NM_001567.3	929	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344813	118344813	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	102	217	0	ENST00000534358.1:c.2942del	p.Pro981HisfsTer26	p.P981Hfs*26	ENST00000534358	NM_005933.3	980	gCc/gc																																																																														
RB1	5925	MSKCC	GRCh37	13	48953727	48953728	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	150	148	0	ENST00000267163.4:c.1333-2dup		p.X445_splice	ENST00000267163	NM_000321.2	445																																																																															
CDK12	51755	MSKCC	GRCh37	17	37687538	37687539	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	346	311	0	ENST00000447079.4:c.4443dup	p.Gly1482ArgfsTer31	p.G1482Rfs*31	ENST00000447079	NM_015083.1	1481	aga/agAa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965722	18965722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1465	295	812	0	ENST00000262803.5:c.1300G>A	p.Glu434Lys	p.E434K	ENST00000262803	NM_002911.3	434	Gag/Aag																																																																														
ERF	2077	MSKCC	GRCh37	19	42752902	42752902	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2175	796	950	0	ENST00000222329.4:c.1362C>G	p.Phe454Leu	p.F454L	ENST00000222329	NM_006494.2	454	ttC/ttG																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715331	61715331	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	144	500	0	ENST00000401558.2:c.2282G>C	p.Gly761Ala	p.G761A	ENST00000401558	NM_003400.3	761	gGt/gCt																																																																														
EP300	2033	MSKCC	GRCh37	22	41553318	41553318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	173	413	0	ENST00000263253.7:c.3407C>T	p.Ser1136Leu	p.S1136L	ENST00000263253	NM_001429.3	1136	tCa/tTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41556696	41556696	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	144	345	0	ENST00000263253.7:c.3641C>G	p.Ser1214Cys	p.S1214C	ENST00000263253	NM_001429.3	1214	tCt/tGt																																																																														
ATR	545	MSKCC	GRCh37	3	142189021	142189021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	67	179	0	ENST00000350721.4:c.6226C>G	p.Leu2076Val	p.L2076V	ENST00000350721	NM_001184.3	2076	Cta/Gta																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32183153	32183153	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	272	784	0	ENST00000375023.3:c.1871G>C	p.Cys624Ser	p.C624S	ENST00000375023	NM_004557.3	624	tGt/tCt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732954	44732954	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	173	508	0	ENST00000377967.4:c.157G>C	p.Asp53His	p.D53H	ENST00000377967	NM_021140.2	53	Gac/Cac																																																																														
EP300	2033	MSKCC	GRCh37	22	41554426	41554428	+	missense_variant	Missense_Mutation	ONP	CTC	CTC	TTA			P-0047636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	181	397	0	ENST00000263253.7:c.3512_3514delinsTTA	p.Ser1171_Pro1172delinsPheThr	p.S1171_P1172delinsFT	ENST00000263253	NM_001429.3	1171	tCTCca/tTTAca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	282	656	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913315		P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	351	761	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699237	117699237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	61	320	0	ENST00000369458.3:c.404C>T	p.Ser135Phe	p.S135F	ENST00000369458	NM_024626.3	135	tCt/tTt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052917	180052917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	458	846	0	ENST00000261937.6:c.1373G>T	p.Trp458Leu	p.W458L	ENST00000261937	NM_182925.4	458	tGg/tTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435146	18435146	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	54	265	0	ENST00000266497.5:c.131T>C	p.Val44Ala	p.V44A	ENST00000266497		44	gTa/gCa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679173	88679173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	94	430	0	ENST00000360948.2:c.864C>A	p.Asn288Lys	p.N288K	ENST00000360948	NM_001012338.2	288	aaC/aaA																																																																														
JAK1	3716	MSKCC	GRCh37	1	65321353	65321353	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	122	518	0	ENST00000342505.4:c.1487A>T	p.Lys496Met	p.K496M	ENST00000342505	NM_002227.2	496	aAg/aTg																																																																														
PARP1	142	MSKCC	GRCh37	1	226567713	226567713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	197	553	1	ENST00000366794.5:c.1453G>T	p.Val485Leu	p.V485L	ENST00000366794	NM_001618.3	485	Gtg/Ttg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416864	121416864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1304	178	835	0	ENST00000257555.6:c.293C>A	p.Ala98Asp	p.A98D	ENST00000257555		98	gCc/gAc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623615	28623615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	41	419	0	ENST00000241453.7:c.942T>A	p.Phe314Leu	p.F314L	ENST00000241453	NM_004119.2	314	ttT/ttA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582969	95582969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	91	210	0	ENST00000343455.3:c.1573G>C	p.Gly525Arg	p.G525R	ENST00000343455	NM_177438.2	525	Ggt/Cgt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438164	56438164	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	295	766	0	ENST00000407977.2:c.829G>T	p.Glu277Ter	p.E277*	ENST00000407977		277	Gag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144113	11144113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	340	694	1	ENST00000344626.4:c.3694G>T	p.Gly1232Cys	p.G1232C	ENST00000344626	NM_003072.3	1232	Ggc/Tgc																																																																														
ERF	2077	MSKCC	GRCh37	19	42752639	42752639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	273	633	0	ENST00000222329.4:c.1625C>T	p.Ser542Phe	p.S542F	ENST00000222329	NM_006494.2	542	tCc/tTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022714	31022714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	208	535	1	ENST00000375687.4:c.2199G>T	p.Gln733His	p.Q733H	ENST00000375687	NM_015338.5	733	caG/caT																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672380	86672380	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	48	208	0	ENST00000274376.6:c.2182G>T	p.Glu728Ter	p.E728*	ENST00000274376	NM_002890.2	728	Gag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942864	68942864	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	165	424	1	ENST00000288368.4:c.676G>T	p.Glu226Ter	p.E226*	ENST00000288368	NM_024870.2	226	Gaa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971042	21971042	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	136	575	0	ENST00000304494.5:c.316del	p.Val106CysfsTer40	p.V106Cfs*40	ENST00000304494	NM_000077.4	106	Gtg/tg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971042	21971042	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	136	575	0	ENST00000304494.5:c.316del	p.Val106CysfsTer40	p.V106Cfs*40	ENST00000304494	NM_000077.4	106	Gtg/tg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971042	21971042	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	136	575	0	ENST00000304494.5:c.316del	p.Val106CysfsTer40	p.V106Cfs*40	ENST00000304494	NM_000077.4	106	Gtg/tg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716344	18716344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	27	243	0	ENST00000266497.5:c.3691G>A	p.Glu1231Lys	p.E1231K	ENST00000266497		1231	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0047638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	23	240	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121835	2121835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1515	91	829	0	ENST00000219476.3:c.1997C>T	p.Pro666Leu	p.P666L	ENST00000219476	NM_000548.3	666	cCc/cTc																																																																														
BTK	695	MSKCC	GRCh37	X	100629571	100629571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	24	193	0	ENST00000308731.7:c.193G>A	p.Glu65Lys	p.E65K	ENST00000308731	NM_000061.2	65	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	357	760	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40899060	40899060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	106	573	0	ENST00000373198.4:c.2210C>A	p.Thr737Asn	p.T737N	ENST00000373198	NM_133170.3	737	aCt/aAt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23640563	23640563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	83	412	0	ENST00000261584.4:c.2548A>G	p.Ile850Val	p.I850V	ENST00000261584	NM_024675.3	850	Ata/Gta																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688737	47688737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	90	367	0	ENST00000347630.2:c.563A>G	p.Asp188Gly	p.D188G	ENST00000347630	NM_001007230.1	188	gAt/gGt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871271	35871271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	58	275	0	ENST00000303115.3:c.493C>A	p.His165Asn	p.H165N	ENST00000303115	NM_002185.3	165	Cac/Aac																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652429	48652429	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	175	1133	2	ENST00000376670.3:c.1100T>A	p.Leu367Gln	p.L367Q	ENST00000376670	NM_002049.3	367	cTg/cAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76937561	76937561	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	37	293	0	ENST00000373344.5:c.3187T>A	p.Tyr1063Asn	p.Y1063N	ENST00000373344	NM_000489.3	1063	Tat/Aat																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	44	244	0	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	398	516	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0047641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	33	110	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0047641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	36	150	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143043354	143043354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	27	191	0	ENST00000262992.4:c.2062G>A	p.Asp688Asn	p.D688N	ENST00000262992	NM_001101669.1	688	Gat/Aat																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711258	114711258	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	106	319	0	ENST00000543371.1:c.273del	p.Asp91GlufsTer17	p.D91Efs*17	ENST00000543371	NM_001198531.1	91	gaT/ga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248454	212248454	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	58	242	0	ENST00000342788.4:c.3813T>A	p.Asn1271Lys	p.N1271K	ENST00000342788	NM_005235.2	1271	aaT/aaA																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268726	41268726	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	40	173	0	ENST00000349496.5:c.964C>T	p.Gln322Ter	p.Q322*	ENST00000349496	NM_001904.3	322	Caa/Taa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200769	128200769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	276	510	0	ENST00000341105.2:c.1036G>A	p.Gly346Ser	p.G346S	ENST00000341105	NM_032638.4	346	Ggc/Agc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845406	151845406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	102	445	1	ENST00000262189.6:c.13606G>A	p.Ala4536Thr	p.A4536T	ENST00000262189	NM_170606.2	4536	Gct/Act																																																																														
MED12	9968	MSKCC	GRCh37	X	70339192	70339239	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAACAACTAAACGCCGCTTTCCTGCCTCAGGATGAACTGACGGCCTT	AAAACAACTAAACGCCGCTTTCCTGCCTCAGGATGAACTGACGGCCTT	-			P-0047641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	93	142	1	ENST00000374080.3:c.100-31_116del		p.X34_splice	ENST00000374080		34																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0047646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	518	292	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576911	7576912	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0047646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	120	651	0	ENST00000269305.4:c.934_935del	p.Thr312GlnfsTer24	p.T312Qfs*24	ENST00000269305	NM_001126112.2	312	ACc/c																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	14	295	1	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574005	7574005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	744	655	0	ENST00000269305.4:c.1022T>C	p.Phe341Ser	p.F341S	ENST00000269305	NM_001126112.2	341	tTc/tCc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910570	29910570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	109	792	0	ENST00000376809.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000376809	NM_002116.7	37	tCc/tTc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986598	36986598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	46	434	0	ENST00000354822.5:c.1091C>T	p.Ala364Val	p.A364V	ENST00000354822	NM_001079668.2	364	gCc/gTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918984	50918984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	101	622	0	ENST00000440232.2:c.2721G>A	p.Met907Ile	p.M907I	ENST00000440232	NM_002691.3	907	atG/atA																																																																														
EP300	2033	MSKCC	GRCh37	22	41545172	41545182	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTCTCAAGTA	TGTCTCAAGTA	-			P-0047648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	43	419	0	ENST00000263253.7:c.2379_2379+10del		p.X793_splice	ENST00000263253	NM_001429.3	793																																																																															
FANCC	2176	MSKCC	GRCh37	9	97876993	97876993	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0047648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	132	349	0	ENST00000289081.3:c.1073-1G>A		p.X358_splice	ENST00000289081	NM_000136.2	358																																																																															
MED12	9968	MSKCC	GRCh37	X	70361107	70361127	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAACAGCAA	CAGCAGCAGCAGCAACAGCAA	-			P-0047648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	19	278	0	ENST00000374080.3:c.6318_6338del	p.Gln2109_Gln2115del	p.Q2109_Q2115del	ENST00000374080		2099	CAGCAGCAGCAGCAACAGCAA/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	13	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs397516436		P-0047651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	201	431	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0047651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	20	199	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259489	89259489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	44	310	0	ENST00000336596.2:c.633G>T	p.Met211Ile	p.M211I	ENST00000336596	NM_005233.5	211	atG/atT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212587118	212587118	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs74898139		P-0047651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	66	199	0	ENST00000342788.4:c.883C>T	p.His295Tyr	p.H295Y	ENST00000342788	NM_005235.2	295	Cat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112174774	112174774	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	49	118	0	ENST00000257430.4:c.3484del	p.Tyr1162IlefsTer3	p.Y1162Ifs*3	ENST00000257430	NM_000038.5	1161	aaT/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822299	72822299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	140	626	0	ENST00000268489.5:c.9876G>T	p.Gln3292His	p.Q3292H	ENST00000268489	NM_006885.3	3292	caG/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	202	597	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	176	576	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	204	459	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	204	459	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	204	459	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	17	12	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413072	139413072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	360	569	0	ENST00000277541.6:c.1070T>C	p.Phe357Ser	p.F357S	ENST00000277541	NM_017617.3	357	tTc/tCc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910349	29910349	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1381	211	1007	1	ENST00000376809.5:c.19C>T	p.Arg7Ter	p.R7*	ENST00000376809	NM_002116.7	7	Cga/Tga																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256765	46256765	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	21	229	0	ENST00000371998.3:c.821C>T	p.Ser274Leu	p.S274L	ENST00000371998		274	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	462	278	0				ENST00000310581	NM_198253.2																																																																																
HNF1A	6927	MSKCC	GRCh37	12	121438937	121438937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	214	725	0	ENST00000257555.6:c.1838C>G	p.Ser613Cys	p.S613C	ENST00000257555		613	tCc/tGc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245752	41245752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	29	401	0	ENST00000357654.3:c.1796A>G	p.Asn599Ser	p.N599S	ENST00000357654	NM_007294.3	599	aAt/aGt																																																																														
EP300	2033	MSKCC	GRCh37	22	41523752	41523752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	118	460	0	ENST00000263253.7:c.1168G>A	p.Val390Met	p.V390M	ENST00000263253	NM_001429.3	390	Gtg/Atg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259382	89259382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	51	306	0	ENST00000336596.2:c.526A>G	p.Lys176Glu	p.K176E	ENST00000336596	NM_005233.5	176	Aag/Gag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549397	187549397	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	158	416	0	ENST00000441802.2:c.4721C>A	p.Ser1574Ter	p.S1574*	ENST00000441802	NM_005245.3	1574	tCg/tAg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910379	29910386	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGCCCT	CTGGCCCT	-			P-0047652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1391	185	1026	0	ENST00000376809.5:c.49_56del	p.Leu17AspfsTer79	p.L17Dfs*79	ENST00000376809	NM_002116.7	17	CTGGCCCTg/g																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	126	436	2	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	147	477	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521619	46521619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	82	268	0	ENST00000262741.5:c.789G>T	p.Leu263Phe	p.L263F	ENST00000262741	NM_003629.3	263	ttG/ttT																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745466	162745466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	46	267	0	ENST00000367921.3:c.1881G>T	p.Lys627Asn	p.K627N	ENST00000367921	NM_006182.2	627	aaG/aaT																																																																														
IL10	3586	MSKCC	GRCh37	1	206944372	206944372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	107	374	0	ENST00000423557.1:c.258G>T	p.Met86Ile	p.M86I	ENST00000423557	NM_000572.2	86	atG/atT																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850948	63850948	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	54	388	0	ENST00000279873.7:c.1726G>T	p.Glu576Ter	p.E576*	ENST00000279873	NM_032199.2	576	Gaa/Taa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332788	70332788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	113	481	0	ENST00000373644.4:c.693G>T	p.Glu231Asp	p.E231D	ENST00000373644	NM_030625.2	231	gaG/gaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653838	89653838	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	59	271	0	ENST00000371953.3:c.136T>C	p.Tyr46His	p.Y46H	ENST00000371953	NM_000314.4	46	Tac/Cac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	81	330	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	103	385	0	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247515	123247515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	97	329	0	ENST00000358487.5:c.1976A>C	p.Lys659Thr	p.K659T	ENST00000358487	NM_000141.4	659	aAg/aCg																																																																														
WT1	7490	MSKCC	GRCh37	11	32410705	32410705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	79	336	0	ENST00000332351.3:c.1453C>T	p.Arg485Trp	p.R485W	ENST00000332351	NM_024426.4	485	Cgg/Tgg																																																																														
WT1	7490	MSKCC	GRCh37	11	32417887	32417887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	112	461	0	ENST00000332351.3:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000332351	NM_024426.4	389	Cgc/Tgc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102207817	102207817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	58	174	0	ENST00000263464.3:c.1799G>A	p.Arg600His	p.R600H	ENST00000263464	NM_001165.4	600	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433357	49433357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	175	637	0	ENST00000301067.7:c.8090G>A	p.Arg2697His	p.R2697H	ENST00000301067	NM_003482.3	2697	cGc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	70	464	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910464	32910464	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	72	277	0	ENST00000380152.3:c.1972T>C	p.Ser658Pro	p.S658P	ENST00000380152		658	Tcc/Ccc																																																																														
RB1	5925	MSKCC	GRCh37	13	48953748	48953748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	46	143	0	ENST00000267163.4:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000267163	NM_000321.2	451	Cgc/Tgc																																																																														
BLM	641	MSKCC	GRCh37	15	91290720	91290720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs139282091		P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	43	180	0	ENST00000355112.3:c.98C>T	p.Ser33Leu	p.S33L	ENST00000355112	NM_000057.2	33	tCa/tTa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99442819	99442819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	57	411	1	ENST00000268035.6:c.1216C>T	p.Arg406Cys	p.R406C	ENST00000268035	NM_000875.3	406	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828804	3828804	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	140	458	0	ENST00000262367.5:c.1838T>C	p.Phe613Ser	p.F613S	ENST00000262367	NM_004380.2	613	tTc/tCc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020583	14020583	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	70	269	0	ENST00000311895.7:c.554T>G	p.Leu185Arg	p.L185R	ENST00000311895	NM_005236.2	185	cTt/cGt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654624	67654624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	108	302	0	ENST00000264010.4:c.1111C>T	p.Arg371Cys	p.R371C	ENST00000264010	NM_006565.3	371	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828383	72828383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	138	527	1	ENST00000268489.5:c.8198G>A	p.Arg2733His	p.R2733H	ENST00000268489	NM_006885.3	2733	cGt/cAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993035	72993035	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	198	710	0	ENST00000268489.5:c.1010T>C	p.Val337Ala	p.V337A	ENST00000268489	NM_006885.3	337	gTa/gCa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033970	48033970	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	64	276	0	ENST00000234420.5:c.4054A>G	p.Lys1352Glu	p.K1352E	ENST00000234420	NM_000179.2	1352	Aaa/Gaa																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873391	136873391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	90	258	0	ENST00000241393.3:c.107T>C	p.Phe36Ser	p.F36S	ENST00000241393	NM_003467.2	36	tTc/tCc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266137	198266137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	79	260	0	ENST00000335508.6:c.2483G>T	p.Arg828Ile	p.R828I	ENST00000335508	NM_012433.2	828	aGa/aTa																																																																														
BARD1	580	MSKCC	GRCh37	2	215632204	215632204	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	43	237	0	ENST00000260947.4:c.1568+2T>C		p.X523_splice	ENST00000260947	NM_000465.2	523																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275126	41275126	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	53	262	0	ENST00000349496.5:c.1292A>C	p.Asn431Thr	p.N431T	ENST00000349496	NM_001904.3	431	aAt/aCt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158233	47158233	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	53	214	0	ENST00000409792.3:c.4466A>C	p.Lys1489Thr	p.K1489T	ENST00000409792	NM_014159.6	1489	aAa/aCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916860	178916860	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	66	366	0	ENST00000263967.3:c.247T>G	p.Phe83Val	p.F83V	ENST00000263967	NM_006218.2	83	Ttt/Gtt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	78	366	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55131112	55131112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	115	397	0	ENST00000257290.5:c.655G>T	p.Glu219Ter	p.E219*	ENST00000257290	NM_006206.4	219	Gaa/Taa																																																																														
KIT	3815	MSKCC	GRCh37	4	55575630	55575630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	60	296	0	ENST00000288135.5:c.1156G>A	p.Glu386Lys	p.E386K	ENST00000288135	NM_000222.2	386	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	125	477	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	66	298	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271223	153271223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	19	176	0	ENST00000281708.4:c.555G>T	p.Lys185Asn	p.K185N	ENST00000281708	NM_033632.3	185	aaG/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	76	323	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589552	67589552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	32	110	0	ENST00000274335.5:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000274335		439	Gaa/Aaa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590445	67590445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	40	85	0	ENST00000274335.5:c.1507C>T	p.Arg503Trp	p.R503W	ENST00000274335		503	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	38	258	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175897	112175897	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	40	143	0	ENST00000257430.4:c.4606G>T	p.Glu1536Ter	p.E1536*	ENST00000257430	NM_000038.5	1536	Gaa/Taa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131939071	131939071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	61	227	1	ENST00000265335.6:c.2287C>T	p.Arg763Cys	p.R763C	ENST00000265335		763	Cgc/Tgc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163827	152163827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	135	344	0	ENST00000206249.3:c.548G>A	p.Arg183His	p.R183H	ENST00000206249	NM_000125.3	183	cGc/cAc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729927	41729927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	130	564	0	ENST00000242208.4:c.602G>T	p.Arg201Met	p.R201M	ENST00000242208	NM_002192.2	201	aGg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132745	152132745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	107	392	0	ENST00000262189.6:c.127G>T	p.Asp43Tyr	p.D43Y	ENST00000262189	NM_170606.2	43	Gat/Tat																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370997	55370997	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	153	591	0	ENST00000297316.4:c.299A>C	p.Lys100Thr	p.K100T	ENST00000297316	NM_022454.3	100	aAg/aCg																																																																														
TEK	7010	MSKCC	GRCh37	9	27190544	27190544	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	119	445	0	ENST00000380036.4:c.1345A>C	p.Asn449His	p.N449H	ENST00000380036	NM_000459.3	449	Aat/Cat																																																																														
ARAF	369	MSKCC	GRCh37	X	47426069	47426069	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	132	691	0	ENST00000377045.4:c.589T>G	p.Phe197Val	p.F197V	ENST00000377045	NM_001654.4	197	Ttc/Gtc																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	65	421	0	ENST00000374080.3:c.130G>C	p.Gly44Arg	p.G44R	ENST00000374080		44	Ggt/Cgt																																																																														
ATRX	546	MSKCC	GRCh37	X	76888715	76888715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	43	327	0	ENST00000373344.5:c.5114A>G	p.Asn1705Ser	p.N1705S	ENST00000373344	NM_000489.3	1705	aAc/aGc																																																																														
ATRX	546	MSKCC	GRCh37	X	76939017	76939017	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	120	461	0	ENST00000373344.5:c.1731A>C	p.Lys577Asn	p.K577N	ENST00000373344	NM_000489.3	577	aaA/aaC																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	30	308	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0047669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	38	235	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
ATM	472	MSKCC	GRCh37	11	108236081	108236081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	30	344	0	ENST00000278616.4:c.9017C>T	p.Ala3006Val	p.A3006V	ENST00000278616	NM_000051.3	3006	gCt/gTt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066889	30066889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	63	355	0	ENST00000331968.5:c.2242G>A	p.Ala748Thr	p.A748T	ENST00000331968	NM_002742.2	748	Gct/Act																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900262	101900263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0047669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	34	243	0	ENST00000374994.4:c.699_700dup	p.Phe234TyrfsTer20	p.F234Yfs*20	ENST00000374994	NM_004612.2	232	-/AT																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	135	636	0	ENST00000269571.5:c.829G>C	p.Asp277His	p.D277H	ENST00000269571		277	Gac/Cac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	111	657	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70339981	70339981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	38	239	0	ENST00000374080.3:c.514G>A	p.Glu172Lys	p.E172K	ENST00000374080		172	Gag/Aag																																																																														
FH	2271	MSKCC	GRCh37	1	241683007	241683007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	45	490	0	ENST00000366560.3:c.16C>T	p.Arg6Trp	p.R6W	ENST00000366560	NM_000143.3	6	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	28	267	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022992	33022992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	27	397	0	ENST00000300177.4:c.101C>T	p.Pro34Leu	p.P34L	ENST00000300177	NM_001191322.1	34	cCc/cTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045024	47045024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	91	428	0	ENST00000329236.7:c.2116C>T	p.His706Tyr	p.H706Y	ENST00000329236	NM_001204466.1	706	Cac/Tac																																																																														
CCND3	896	MSKCC	GRCh37	6	41903779	41903779	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	74	801	0	ENST00000372991.4:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000372991	NM_001760.3	260	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106649	27106649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	72	614	0	ENST00000324856.7:c.6260G>A	p.Gly2087Glu	p.G2087E	ENST00000324856	NM_006015.4	2087	gGa/gAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465527	8465527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	30	406	0	ENST00000356435.5:c.3653A>G	p.Gln1218Arg	p.Q1218R	ENST00000356435		1218	cAa/cGa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660441	227660441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	42	592	0	ENST00000305123.5:c.3014C>T	p.Ser1005Leu	p.S1005L	ENST00000305123	NM_005544.2	1005	tCg/tTg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152382128	152382128	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	50	236	0	ENST00000206249.3:c.1238A>G	p.Asn413Ser	p.N413S	ENST00000206249	NM_000125.3	413	aAc/aGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256591	16256591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	31	393	0	ENST00000375759.3:c.3856G>A	p.Gly1286Arg	p.G1286R	ENST00000375759	NM_015001.2	1286	Ggg/Agg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112578	115112578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	118	782	0	ENST00000257566.3:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000257566	NM_016569.3	388	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112173992	112173992	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	16	257	0	ENST00000257430.4:c.2701C>G	p.Gln901Glu	p.Q901E	ENST00000257430	NM_000038.5	901	Cag/Gag																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163689	72163689	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	15	288	0	ENST00000357731.5:c.667+2T>C		p.X223_splice	ENST00000357731	NM_173808.2	223																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115282430	115282430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	21	351	0	ENST00000438362.2:c.220G>T	p.Gly74Trp	p.G74W	ENST00000438362	NM_001242891.1	74	Ggg/Tgg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863434	57863434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	76	568	0	ENST00000228682.2:c.1529G>T	p.Arg510Leu	p.R510L	ENST00000228682	NM_005269.2	510	cGg/cTg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060928	38060928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	38	607	0	ENST00000250448.2:c.1061C>T	p.Ser354Phe	p.S354F	ENST00000250448	NM_004496.3	354	tCc/tTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15938127	15938127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	17	261	0	ENST00000268712.3:c.7087C>T	p.His2363Tyr	p.H2363Y	ENST00000268712	NM_006311.3	2363	Cat/Tat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281272	15281272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	95	959	0	ENST00000263388.2:c.4984G>A	p.Val1662Ile	p.V1662I	ENST00000263388	NM_000435.2	1662	Gtc/Atc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976465	18976465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	129	1038	0	ENST00000262803.5:c.3115C>A	p.Gln1039Lys	p.Q1039K	ENST00000262803	NM_002911.3	1039	Caa/Aaa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855787	45855787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	66	708	0	ENST00000391945.4:c.2023G>A	p.Gly675Ser	p.G675S	ENST00000391945	NM_000400.3	675	Ggc/Agc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44527589	44527589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	46	435	0	ENST00000291552.4:c.16G>A	p.Ala6Thr	p.A6T	ENST00000291552	NM_006758.2	6	Gcc/Acc																																																																														
VHL	7428	MSKCC	GRCh37	3	10183589	10183589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	77	859	0	ENST00000256474.2:c.58G>A	p.Val20Ile	p.V20I	ENST00000256474	NM_000551.3	20	Gtc/Atc																																																																														
MITF	4286	MSKCC	GRCh37	3	69998222	69998222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	54	383	0	ENST00000352241.4:c.783G>C	p.Leu261Phe	p.L261F	ENST00000352241	NM_198159.2	261	ttG/ttC																																																																														
BCL6	604	MSKCC	GRCh37	3	187443269	187443285	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCTGCCCACTCTGCTCA	CCTGCCCACTCTGCTCA	-			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	19	199	0	ENST00000232014.4:c.1839+2_1839+18del		p.X613_splice	ENST00000232014	NM_001130845.1	613																																																																															
TP63	8626	MSKCC	GRCh37	3	189585727	189585727	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	34	344	0	ENST00000264731.3:c.988A>G	p.Arg330Gly	p.R330G	ENST00000264731	NM_003722.4	330	Aga/Gga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532888	187532888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	27	289	0	ENST00000441802.2:c.9505G>A	p.Asp3169Asn	p.D3169N	ENST00000441802	NM_005245.3	3169	Gat/Aat																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514451	149514451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	61	519	0	ENST00000261799.4:c.493G>T	p.Gly165Trp	p.G165W	ENST00000261799	NM_002609.3	165	Ggg/Tgg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324587	31324587	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	117	1170	1	ENST00000412585.2:c.221C>G	p.Pro74Arg	p.P74R	ENST00000412585	NM_005514.6	74	cCg/cGg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035222	6035222	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	39	320	0	ENST00000265849.7:c.846G>C	p.Arg282Ser	p.R282S	ENST00000265849	NM_000535.5	282	agG/agC																																																																														
MET	4233	MSKCC	GRCh37	7	116380944	116380944	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	72	582	0	ENST00000397752.3:c.1566T>A	p.His522Gln	p.H522Q	ENST00000397752	NM_000245.2	522	caT/caA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	201	553	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	74	262	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591902	48591902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	113	327	0	ENST00000342988.3:c.1065C>A	p.Asp355Glu	p.D355E	ENST00000342988	NM_005359.5	355	gaC/gaA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874092	151874092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	144	405	0	ENST00000262189.6:c.8446T>A	p.Ser2816Thr	p.S2816T	ENST00000262189	NM_170606.2	2816	Tcc/Acc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94908802	94908802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	106	293	0	ENST00000536441.1:c.1252G>A	p.Asp418Asn	p.D418N	ENST00000536441	NM_144665.3	418	Gat/Aat																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986511	36986511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	138	679	1	ENST00000354822.5:c.1178C>T	p.Ser393Phe	p.S393F	ENST00000354822	NM_001079668.2	393	tCc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249076	55249076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	207	542	1	ENST00000275493.2:c.2374C>T	p.Leu792Phe	p.L792F	ENST00000275493	NM_005228.3	792	Ctc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0047672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	17	341	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061011	38061011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	81	491	0	ENST00000250448.2:c.978del	p.Ala329ProfsTer21	p.A329Pfs*21	ENST00000250448	NM_004496.3	326	ccC/cc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163758	152163758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011373-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	125	422	0	ENST00000206249.3:c.479G>A	p.Gly160Asp	p.G160D	ENST00000206249	NM_000125.3	160	gGt/gAt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44936073	44936073	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0011373-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	99	337	0	ENST00000377967.4:c.2832+2T>C		p.X944_splice	ENST00000377967	NM_021140.2	944																																																																															
EGFR	1956	MSKCC	GRCh37	7	55228032	55229054	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTAAGTCACCGCTTTCTGTTTAGTTTATGGAGTTGGTTCTAATGGGTCCTTTATTTGTATTTAGAATATTGAAGGGCTATTCCCATTTAAATTACTTTTTTCAGTTCCTTAAGAAGCAAATTAAAATCTTAAGATTCCTAACTGTGAAATTACCATGTGAATTCCATTAAAACTTTTTCCAGATCATTACCATTCAATGGGATGAATTTACCCTGAGGTTTAGGCTACCAATTATTTGTAATGTAAGTAACTAAATTTAGTATTAGTTATATTACCTTTTAGTTGTAGGTCACTCTCTGCTCATTTCAGCCTGTAAAGACTACAGCTACACACATACACACACAGAGGAATGGAATGAGCACTTTACATCAACACTTCCTGTTCTGGCTCTAGAGCCTCAGCTTTTGAAGCTGGTGAGAGCCTGGCCTGTGCTGGGCCTTGGCCACGGGCAGCGTCAGCTTTGAGTCAAGTGCTGGTCTGGCCTCCCTAGCTTTGAGCCTCTGTCAATTCCCTTAATCTGTTTAGGCTTTGGCTTCCTCATCCATAGAATGGAGATATGAATGATTCCTACGCCGTAGTGCTTTGAGAGAATTCAGTGAAATTCCTGTGTGTAAAACCCTTCCATGGTGCCTAGCACACAGCACACAGCCAATGGCCCAATGGCTCCTATCAGCTGTGGGATTTGTCATCAGAACACCACCAGCTCTGCTCCAGGCTGCCCTGGGTACCATCAAAACACACCCTGTGCCCAGCAGCACCTGCTCCTCTGCACACCTGGTTCCTTCAGCAGGGGCAGTGGCCGTGGGAGCACAGAAAACATGGAGTCCCATCTGGTTTAATTGATGCCATTGCCAAAGGGGAGGACTCACGGCACCCCCTCTCGGGTGCCAGGGTGCCTGGCTCCCACCAGGAGGAAGACCTGTCCTCCACTGTCAGGCACATTTCAGTCTTCCCAGCAGCCAGCACAACTACTTTGTCCTTCCAGTCACGGTCGGCCTCTGGGAAGCCCAGTCTGTGTCCTCC	GTAAGTCACCGCTTTCTGTTTAGTTTATGGAGTTGGTTCTAATGGGTCCTTTATTTGTATTTAGAATATTGAAGGGCTATTCCCATTTAAATTACTTTTTTCAGTTCCTTAAGAAGCAAATTAAAATCTTAAGATTCCTAACTGTGAAATTACCATGTGAATTCCATTAAAACTTTTTCCAGATCATTACCATTCAATGGGATGAATTTACCCTGAGGTTTAGGCTACCAATTATTTGTAATGTAAGTAACTAAATTTAGTATTAGTTATATTACCTTTTAGTTGTAGGTCACTCTCTGCTCATTTCAGCCTGTAAAGACTACAGCTACACACATACACACACAGAGGAATGGAATGAGCACTTTACATCAACACTTCCTGTTCTGGCTCTAGAGCCTCAGCTTTTGAAGCTGGTGAGAGCCTGGCCTGTGCTGGGCCTTGGCCACGGGCAGCGTCAGCTTTGAGTCAAGTGCTGGTCTGGCCTCCCTAGCTTTGAGCCTCTGTCAATTCCCTTAATCTGTTTAGGCTTTGGCTTCCTCATCCATAGAATGGAGATATGAATGATTCCTACGCCGTAGTGCTTTGAGAGAATTCAGTGAAATTCCTGTGTGTAAAACCCTTCCATGGTGCCTAGCACACAGCACACAGCCAATGGCCCAATGGCTCCTATCAGCTGTGGGATTTGTCATCAGAACACCACCAGCTCTGCTCCAGGCTGCCCTGGGTACCATCAAAACACACCCTGTGCCCAGCAGCACCTGCTCCTCTGCACACCTGGTTCCTTCAGCAGGGGCAGTGGCCGTGGGAGCACAGAAAACATGGAGTCCCATCTGGTTTAATTGATGCCATTGCCAAAGGGGAGGACTCACGGCACCCCCTCTCGGGTGCCAGGGTGCCTGGCTCCCACCAGGAGGAAGACCTGTCCTCCACTGTCAGGCACATTTCAGTCTTCCCAGCAGCCAGCACAACTACTTTGTCCTTCCAGTCACGGTCGGCCTCTGGGAAGCCCAGTCTGTGTCCTCC	-			P-0011373-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	18	200	0	ENST00000275493.2:c.1498+1_1499-138del		p.X500_splice	ENST00000275493	NM_005228.3	500																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505014	186505014	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011373-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	105	283	0	ENST00000323963.5:c.870del	p.Glu291ArgfsTer26	p.E291Rfs*26	ENST00000323963		290	acT/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	317	255	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	565	718	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981882	70981882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	232	632	0	ENST00000276594.2:c.214C>T	p.Arg72Trp	p.R72W	ENST00000276594	NM_024504.3	72	Cgg/Tgg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498116	498116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	691	328	0	ENST00000399788.2:c.142A>G	p.Ile48Val	p.I48V	ENST00000399788	NM_001042603.1	48	Atc/Gtc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249016	55249017	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCACG			P-0047183-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			883	266	676	0	ENST00000275493.2:c.2315_2320dup	p.His773_Val774insAlaHis	p.H773_V774insAH	ENST00000275493	NM_005228.3	772	ccc/cCCCACGcc																																																																														
ATM	472	MSKCC	GRCh37	11	108106538	108106538	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047183-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	51	229	0	ENST00000278616.4:c.473A>T	p.Glu158Val	p.E158V	ENST00000278616	NM_000051.3	158	gAa/gTa																																																																														
FH	2271	MSKCC	GRCh37	1	241682964	241682964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047183-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1256	78	670	1	ENST00000366560.3:c.59C>T	p.Ala20Val	p.A20V	ENST00000366560	NM_000143.3	20	gCa/gTa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751131	57751131	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047183-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	24	243	0	ENST00000274289.3:c.1736T>C	p.Met579Thr	p.M579T	ENST00000274289	NM_006622.3	579	aTg/aCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	42	349	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	119	483	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	95	595	1	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	95	595	1	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980844	40980844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	67	521	0	ENST00000373198.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000373198	NM_133170.3	548	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	90	527	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	90	527	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005419	29005419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55687105		P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	31	288	0	ENST00000282397.4:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000282397	NM_002019.4	281	cGa/cAa																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022962	33022962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	54	429	2	ENST00000300177.4:c.71G>A	p.Gly24Glu	p.G24E	ENST00000300177	NM_001191322.1	24	gGg/gAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245381	153245381	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	55	496	0	ENST00000281708.4:c.1810A>G	p.Lys604Glu	p.K604E	ENST00000281708	NM_033632.3	604	Aaa/Gaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058515	69058515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	69	470	0	ENST00000288368.4:c.4159C>T	p.His1387Tyr	p.H1387Y	ENST00000288368	NM_024870.2	1387	Cat/Tat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332598	153332598	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	30	312	0	ENST00000281708.4:c.358C>T	p.Gln120Ter	p.Q120*	ENST00000281708	NM_033632.3	120	Cag/Tag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719930	18719930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	32	283	0	ENST00000266497.5:c.3827G>A	p.Arg1276Lys	p.R1276K	ENST00000266497		1276	aGa/aAa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2218087	2218087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	122	760	0	ENST00000326181.6:c.149C>T	p.Thr50Ile	p.T50I	ENST00000326181	NM_032271.2	50	aCc/aTc																																																																														
ATM	472	MSKCC	GRCh37	11	108114824	108114824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	41	368	0	ENST00000278616.4:c.641C>T	p.Ser214Phe	p.S214F	ENST00000278616	NM_000051.3	214	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246264	46246264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	55	335	0	ENST00000334344.6:c.4358C>T	p.Ala1453Val	p.A1453V	ENST00000334344	NM_152641.2	1453	gCt/gTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912975	32912975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	46	349	1	ENST00000380152.3:c.4483G>A	p.Val1495Ile	p.V1495I	ENST00000380152		1495	Gtc/Atc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639981	3639982	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	75	726	2	ENST00000294008.3:c.3657_3658delinsAA	p.Gly1220Arg	p.G1220R	ENST00000294008	NM_032444.2	1219	gaGGgg/gaAAgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032058	10032058	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	67	506	0	ENST00000330684.3:c.765G>A	p.Trp255Ter	p.W255*	ENST00000330684	NM_001134407.1	255	tgG/tgA																																																																														
MITF	4286	MSKCC	GRCh37	3	70014127	70014128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCATCAT			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	68	453	0	ENST00000352241.4:c.1292_1299dup	p.Ala434SerfsTer6	p.A434Sfs*6	ENST00000352241	NM_198159.2	431	cag/cAGCATCATag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876434	35876434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	96	592	1	ENST00000303115.3:c.1226G>A	p.Gly409Glu	p.G409E	ENST00000303115	NM_002185.3	409	gGg/gAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710554	117710554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	23	208	0	ENST00000368508.3:c.1718C>T	p.Ala573Val	p.A573V	ENST00000368508	NM_002944.2	573	gCt/gTt																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194917	29194917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	86	671	0	ENST00000240100.2:c.811G>A	p.Asp271Asn	p.D271N	ENST00000240100	NM_001394.6	271	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971075	21971076	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	82	567	0	ENST00000304494.5:c.282_283delinsAA	p.Val95Met	p.V95M	ENST00000304494	NM_000077.4	94	ctGGtg/ctAAtg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971075	21971076	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	82	567	0	ENST00000304494.5:c.282_283delinsAA	p.Val95Met	p.V95M	ENST00000304494	NM_000077.4	94	ctGGtg/ctAAtg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239078	98239078	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	40	383	0	ENST00000331920.6:c.1565T>G	p.Phe522Cys	p.F522C	ENST00000331920	NM_000264.3	522	tTc/tGc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	114	417	0	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	79	489	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	347	926	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	211	885	0	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	26	761	1	ENST00000269305.4:c.800G>A	p.Arg267Gln	p.R267Q	ENST00000269305	NM_001126112.2	267	cGg/cAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560464	95560464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	145	618	0	ENST00000343455.3:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000343455	NM_177438.2	1709	Gat/Aat																																																																														
AKT2	208	MSKCC	GRCh37	19	40748451	40748451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	165	844	1	ENST00000392038.2:c.431G>A	p.Arg144Gln	p.R144Q	ENST00000392038	NM_001626.4	144	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653807	89653807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	140	444	0	ENST00000371953.3:c.105G>A	p.Met35Ile	p.M35I	ENST00000371953	NM_000314.4	35	atG/atA																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497566	125497566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	33	377	0	ENST00000428830.2:c.130C>T	p.Arg44Cys	p.R44C	ENST00000428830	NM_001114121.2	44	Cgt/Tgt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562840	95562840	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	81	413	4	ENST00000343455.3:c.4417del	p.Ser1473GlnfsTer17	p.S1473Qfs*17	ENST00000343455	NM_177438.2	1473	Tca/ca																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	102	732	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	83	1037	1	ENST00000298229.2:c.2927dupC	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023715	27023716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	134	456	0	ENST00000324856.7:c.827dup	p.Gly277ArgfsTer123	p.G277Rfs*123	ENST00000324856	NM_006015.4	274	atg/atGg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221726	36221726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	184	1052	1	ENST00000222270.7:c.5395G>T	p.Glu1799Ter	p.E1799*	ENST00000222270	NM_014727.1	1799	Gag/Tag																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430981	181430982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	111	882	0	ENST00000325404.1:c.837dup	p.Gly280ArgfsTer30	p.G280Rfs*30	ENST00000325404	NM_003106.3	278	ctc/ctCc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589588	67589608	+	inframe_deletion	In_Frame_Del	DEL	GAATATAACACTCAGTTTCAA	GAATATAACACTCAGTTTCAA	-			P-0047379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	45	250	0	ENST00000274335.5:c.1354_1374del	p.Tyr452_Glu458del	p.Y452_E458del	ENST00000274335		451	GAATATAACACTCAGTTTCAA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	175	971	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	24	623	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	26	794	3	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247243	153247243	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	18	564	0	ENST00000281708.4:c.1559A>T	p.Asp520Val	p.D520V	ENST00000281708	NM_033632.3	520	gAt/gTt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508257	106508257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	108	577	1	ENST00000359195.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000359195	NM_002649.2	84	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112151291	112151291	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	17	387	0	ENST00000257430.4:c.933+1G>A		p.X311_splice	ENST00000257430	NM_000038.5	311																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62298844	62298844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	81	1011	0	ENST00000508582.2:c.709C>T	p.Arg237Trp	p.R237W	ENST00000508582		237	Cgg/Tgg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753452	42753452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	247	1134	1	ENST00000222329.4:c.812C>T	p.Thr271Met	p.T271M	ENST00000222329	NM_006494.2	271	aCg/aTg																																																																														
MITF	4286	MSKCC	GRCh37	3	70014383	70014383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	63	804	0	ENST00000352241.4:c.1547C>T	p.Thr516Met	p.T516M	ENST00000352241	NM_198159.2	516	aCg/aTg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681425	88681425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	39	702	0	ENST00000372037.3:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000372037	NM_004329.2	439	Gag/Aag																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589528	69589528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	72	138	2	ENST00000168712.1:c.325G>A	p.Ala109Thr	p.A109T	ENST00000168712	NM_002007.2	109	Gcg/Acg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112226	115112226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	92	395	2	ENST00000257566.3:c.1514C>T	p.Pro505Leu	p.P505L	ENST00000257566	NM_016569.3	505	cCg/cTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106155847	106155847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	14	580	0	ENST00000380013.4:c.748A>G	p.Asn250Asp	p.N250D	ENST00000380013	NM_001127208.2	250	Aat/Gat																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0047456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	91	146	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227926	55227926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	72	246	0	ENST00000275493.2:c.1393G>A	p.Gly465Arg	p.G465R	ENST00000275493	NM_005228.3	465	Gga/Aga																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741414	17741414	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	88	566	0	ENST00000250003.3:c.85T>G	p.Phe29Val	p.F29V	ENST00000250003	NM_002478.4	29	Ttc/Gtc																																																																														
ATM	472	MSKCC	GRCh37	11	108199836	108199836	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	147	152	0	ENST00000278616.4:c.7178T>G	p.Phe2393Cys	p.F2393C	ENST00000278616	NM_000051.3	2393	tTt/tGt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61713061	61713061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	103	216	0	ENST00000401558.2:c.2350G>T	p.Val784Phe	p.V784F	ENST00000401558	NM_003400.3	784	Gtt/Ttt																																																																														
APC	324	MSKCC	GRCh37	5	112174266	112174266	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	161	257	0	ENST00000257430.4:c.2975del	p.Ser992IlefsTer13	p.S992Ifs*13	ENST00000257430	NM_000038.5	992	aGt/at																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197144	26197144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	118	476	0	ENST00000356476.2:c.335C>T	p.Ala112Val	p.A112V	ENST00000356476		112	gCc/gTc																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127923136	127923136	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	141	326	0	ENST00000373547.4:c.221C>G	p.Thr74Arg	p.T74R	ENST00000373547	NM_002721.4	74	aCa/aGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	57	378	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612623	228612623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	25	580	0	ENST00000366696.1:c.404G>T	p.Arg135Leu	p.R135L	ENST00000366696	NM_003493.2	135	cGg/cTg																																																																														
ATM	472	MSKCC	GRCh37	11	108236117	108236117	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	86	458	2	ENST00000278616.4:c.9053A>T	p.Lys3018Ile	p.K3018I	ENST00000278616	NM_000051.3	3018	aAa/aTa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108074	30108074	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0047488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	75	513	0	ENST00000331968.5:c.733A>T	p.Lys245Ter	p.K245*	ENST00000331968	NM_002742.2	245	Aag/Tag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043477	180043477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	56	680	0	ENST00000261937.6:c.3109G>C	p.Asp1037His	p.D1037H	ENST00000261937	NM_182925.4	1037	Gac/Cac																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004558	150004558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	24	669	2	ENST00000253339.5:c.1667C>T	p.Pro556Leu	p.P556L	ENST00000253339		556	cCa/cTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	26	279	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
APC	324	MSKCC	GRCh37	5	112116601	112116601	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	32	255	0	ENST00000257430.4:c.645+1G>A		p.X215_splice	ENST00000257430	NM_000038.5	215																																																																															
SPEN	23013	MSKCC	GRCh37	1	16261773	16261773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	34	518	0	ENST00000375759.3:c.9038T>C	p.Val3013Ala	p.V3013A	ENST00000375759	NM_015001.2	3013	gTc/gCc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118865	70118865	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	132	585	0	ENST00000245479.2:c.437T>G	p.Leu146Arg	p.L146R	ENST00000245479	NM_000346.3	146	cTg/cGg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483982	212483982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	21	367	0	ENST00000342788.4:c.2221G>T	p.Gly741Ter	p.G741*	ENST00000342788	NM_005235.2	741	Gga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739028	40739028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	35	621	0	ENST00000373198.4:c.3256C>T	p.Arg1086Cys	p.R1086C	ENST00000373198	NM_133170.3	1086	Cgc/Tgc																																																																														
KDR	3791	MSKCC	GRCh37	4	55946234	55946234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	43	379	0	ENST00000263923.4:c.3945C>A	p.Asp1315Glu	p.D1315E	ENST00000263923	NM_002253.2	1315	gaC/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	440	986	4	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0047544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	74	228	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3634797	3634797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	320	773	0	ENST00000294008.3:c.4712C>T	p.Thr1571Met	p.T1571M	ENST00000294008	NM_032444.2	1571	aCg/aTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209679	98209679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	134	880	3	ENST00000331920.6:c.3859C>A	p.His1287Asn	p.H1287N	ENST00000331920	NM_000264.3	1287	Cac/Aac																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	28	318	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	81	389	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
ALK	238	MSKCC	GRCh37	2	29606709	29606709	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	48	490	0	ENST00000389048.3:c.1171G>C	p.Gly391Arg	p.G391R	ENST00000389048	NM_004304.4	391	Gga/Cga																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	163	833	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	87	385	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	83	306	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11205059	11205059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	257	461	1	ENST00000361445.4:c.4730C>T	p.Ala1577Val	p.A1577V	ENST00000361445	NM_004958.3	1577	gCg/gTg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45375023	45375023	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	61	278	0	ENST00000262160.6:c.820T>C	p.Trp274Arg	p.W274R	ENST00000262160	NM_005901.5	274	Tgg/Cgg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033483	48033483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	79	330	1	ENST00000234420.5:c.3787C>T	p.Arg1263Cys	p.R1263C	ENST00000234420	NM_000179.2	1263	Cgc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651278	52651294	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTGGGAGCCCTCCTCAT	CTGGGAGCCCTCCTCAT	-			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	58	286	0	ENST00000394830.3:c.1802_1818del	p.Asn601SerfsTer3	p.N601Sfs*3	ENST00000394830	NM_018313.4	601	aATGAGGAGGGCTCCCAG/a																																																																														
APC	324	MSKCC	GRCh37	5	112175863	112175863	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	80	175	0	ENST00000257430.4:c.4573del	p.Met1525CysfsTer40	p.M1525Cfs*40	ENST00000257430	NM_000038.5	1524	atA/at																																																																														
ATRX	546	MSKCC	GRCh37	X	76829756	76829756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	89	375	0	ENST00000373344.5:c.6285G>T	p.Arg2095Ser	p.R2095S	ENST00000373344	NM_000489.3	2095	agG/agT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	174	348	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	71	296	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29560113	29560113	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	72	296	0	ENST00000358273.4:c.3590C>G	p.Ala1197Gly	p.A1197G	ENST00000358273	NM_001042492.2	1197	gCa/gGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	103	366	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MGA	23269	MSKCC	GRCh37	15	42042235	42042235	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	37	394	1	ENST00000219905.7:c.6430G>T	p.Gly2144Ter	p.G2144*	ENST00000219905	NM_001164273.1	2144	Gga/Tga																																																																														
STK11	6794	MSKCC	GRCh37	19	1218485	1218486	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0047550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	46	518	0	ENST00000326873.7:c.363_364del	p.Lys122AlafsTer40	p.K122Afs*40	ENST00000326873	NM_000455.4	120	gaAGag/gaag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710653	40710653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	42	442	0	ENST00000373198.4:c.4198G>A	p.Gly1400Arg	p.G1400R	ENST00000373198	NM_133170.3	1400	Ggg/Agg																																																																														
SMO	6608	MSKCC	GRCh37	7	128843293	128843293	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	129	1069	1	ENST00000249373.3:c.400T>A	p.Cys134Ser	p.C134S	ENST00000249373	NM_005631.4	134	Tgt/Agt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945121	151945121	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	14	384	0	ENST00000262189.6:c.2398T>A	p.Tyr800Asn	p.Y800N	ENST00000262189	NM_170606.2	800	Tac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	142	740	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39251221	39251221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	19	472	0	ENST00000402219.2:c.1132A>T	p.Thr378Ser	p.T378S	ENST00000402219	NM_005633.3	378	Aca/Tca																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281857	49281857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	44	627	0	ENST00000282018.3:c.904C>T	p.Pro302Ser	p.P302S	ENST00000282018	NM_020377.2	302	Cct/Tct																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216959	7216968	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCACCACC	AGGCACCACC	-			P-0047551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	73	665	0	ENST00000380728.2:c.553_562del	p.Gly185MetfsTer157	p.G185Mfs*157	ENST00000380728		185	GGTGGTGCCTat/at																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2227017	2227017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	30	999	0	ENST00000398665.3:c.4497C>G	p.Ser1499Arg	p.S1499R	ENST00000398665	NM_032482.2	1499	agC/agG																																																																														
AR	367	MSKCC	GRCh37	X	66905906	66905906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	155	388	0	ENST00000374690.3:c.1823G>A	p.Arg608Gln	p.R608Q	ENST00000374690	NM_000044.3	608	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	399	858	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71064764	71065786	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATAGAGAGGATGGCTATGGGGGTGCTCCTCATGGGACAAACTGAAAGAAAACACACAGAAGACCAGAGAATGAATTTGCTGCCAAGAACCATTCCACCAGACGAGGATAAAAAAGGCAGGAGGAGCCCACATGGCCAAATGTGGACAAGACAAATCTGTGATTTCCCCCATCCCATGTAATTGACTAATTAATTCTGCATTGTTGCCTAAAAGCAAGAGTTAAATTGTACCTAAGTGTATTTAGTCAAATGTTAGAAATGTACATCTATGTATGAAAAAGTGTTTGACAGGCTTTTGTTAGATGCAAAGCTCTTTACTCAGACTGCGAAGGAGTCTTTAAAAAGCTAGAACTTATTTAATCTACATAATGAAAATTATAAAATCTGTACTTGATTTTGAGATTTTCTTGCTACATCTACAAGGAATATTATCCATTTTCTCCTCTTCCCTTCCCCCAGAAACTGCTTTCATATAATCACATATTTTTTCCCAAGTTAATTTTATCCAGCAAAGAGGAGTACAATTAAATAATTTGGAATAATACCAAAATAATTTAGGAAGACAAATGTATCCAAGCAGATGATTCGTGTTTTTTTTAAAAAAGCTAATAATGGCAAGAAGATTATATTCCTAAAATTCCTAACACCAACAGTGAGAGAAAATTTGGCATGAACACGAAGGGGTTAATCCTCCAGTGGGGTTCCAATCAATACGTAATGATCTGGCCACACGGATCCAAGTCATGGGATGCTTTGATCCGCACCATGTGGTGCTCGGGGAAGAGTATCTGTTGCACTCACCGATGAACCATATTCTCAAATATTTTCTCTATTATATTTCTGCATCCAGACTTCTTTCAGACAAATTATTTTTACAGTTGTTTCCATAACCTTAAATTCCATCAGATAGAAATGTAAAGCTAACATTGAGAGTTCTGTTTCGTACTCAAGTGCATTCCCTTCCCGGGAAGGGCTATTTTGCAACTTACTCGACTGTCTCTGCCTGACTTTGAACTTCAAGCA	CATAGAGAGGATGGCTATGGGGGTGCTCCTCATGGGACAAACTGAAAGAAAACACACAGAAGACCAGAGAATGAATTTGCTGCCAAGAACCATTCCACCAGACGAGGATAAAAAAGGCAGGAGGAGCCCACATGGCCAAATGTGGACAAGACAAATCTGTGATTTCCCCCATCCCATGTAATTGACTAATTAATTCTGCATTGTTGCCTAAAAGCAAGAGTTAAATTGTACCTAAGTGTATTTAGTCAAATGTTAGAAATGTACATCTATGTATGAAAAAGTGTTTGACAGGCTTTTGTTAGATGCAAAGCTCTTTACTCAGACTGCGAAGGAGTCTTTAAAAAGCTAGAACTTATTTAATCTACATAATGAAAATTATAAAATCTGTACTTGATTTTGAGATTTTCTTGCTACATCTACAAGGAATATTATCCATTTTCTCCTCTTCCCTTCCCCCAGAAACTGCTTTCATATAATCACATATTTTTTCCCAAGTTAATTTTATCCAGCAAAGAGGAGTACAATTAAATAATTTGGAATAATACCAAAATAATTTAGGAAGACAAATGTATCCAAGCAGATGATTCGTGTTTTTTTTAAAAAAGCTAATAATGGCAAGAAGATTATATTCCTAAAATTCCTAACACCAACAGTGAGAGAAAATTTGGCATGAACACGAAGGGGTTAATCCTCCAGTGGGGTTCCAATCAATACGTAATGATCTGGCCACACGGATCCAAGTCATGGGATGCTTTGATCCGCACCATGTGGTGCTCGGGGAAGAGTATCTGTTGCACTCACCGATGAACCATATTCTCAAATATTTTCTCTATTATATTTCTGCATCCAGACTTCTTTCAGACAAATTATTTTTACAGTTGTTTCCATAACCTTAAATTCCATCAGATAGAAATGTAAAGCTAACATTGAGAGTTCTGTTTCGTACTCAAGTGCATTCCCTTCCCGGGAAGGGCTATTTTGCAACTTACTCGACTGTCTCTGCCTGACTTTGAACTTCAAGCA	-			P-0047556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	109	427	0	ENST00000318789.4:c.870-982_910del		p.X290_splice	ENST00000318789	NM_032682.5	290																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680383	30680383	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	269	628	0	ENST00000376406.3:c.1336C>G	p.Gln446Glu	p.Q446E	ENST00000376406	NM_014641.2	446	Caa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	18	320	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220687	1220687	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	37	1162	0	ENST00000326873.7:c.706del	p.Val236TrpfsTer51	p.V236Wfs*51	ENST00000326873	NM_000455.4	235	aaG/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	57	657	0	ENST00000269305.4:c.80delC	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295795	212295795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	52	510	0	ENST00000342788.4:c.2518G>A	p.Val840Ile	p.V840I	ENST00000342788	NM_005235.2	840	Gtt/Att																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215591	5215591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	46	963	0	ENST00000357368.4:c.4112C>T	p.Pro1371Leu	p.P1371L	ENST00000357368	NM_002850.3	1371	cCg/cTg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912079	127912079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	30	312	2	ENST00000373547.4:c.791G>A	p.Arg264His	p.R264H	ENST00000373547	NM_002721.4	264	cGt/cAt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25468934	25468934	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0047571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	59	762	0	ENST00000264709.3:c.1430-1G>A		p.X477_splice	ENST00000264709	NM_175629.2	477																																																																															
PGR	5241	MSKCC	GRCh37	11	100998286	100998288	+	inframe_deletion	In_Frame_Del	DEL	CGG	CGG	-			P-0047571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	10	279	0	ENST00000325455.5:c.1514_1516del	p.Ala505del	p.A505del	ENST00000325455	NM_001202474.3	505	gCCGgg/ggg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	261	428	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0047573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	49	519	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446124	49446125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	240	965	0	ENST00000301067.7:c.1341dup	p.Pro448ThrfsTer7	p.P448Tfs*7	ENST00000301067	NM_003482.3	447	-/A																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937509	32937509	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	154	557	0	ENST00000380152.3:c.8170G>C	p.Gly2724Arg	p.G2724R	ENST00000380152		2724	Ggg/Cgg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817832	3817832	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	187	522	0	ENST00000262367.5:c.3139G>T	p.Glu1047Ter	p.E1047*	ENST00000262367	NM_004380.2	1047	Gaa/Taa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632707	23632707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	91	432	0	ENST00000261584.4:c.3089C>G	p.Thr1030Ser	p.T1030S	ENST00000261584	NM_024675.3	1030	aCt/aGt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022252	31022252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	91	417	0	ENST00000375687.4:c.1737C>G	p.Ile579Met	p.I579M	ENST00000375687	NM_015338.5	579	atC/atG																																																																														
MITF	4286	MSKCC	GRCh37	3	69788762	69788762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	124	387	1	ENST00000352241.4:c.14C>T	p.Ser5Leu	p.S5L	ENST00000352241	NM_198159.2	5	tCg/tTg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975425	13975425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	198	424	0	ENST00000405192.2:c.462C>A	p.Asn154Lys	p.N154K	ENST00000405192	NM_001163147.1	154	aaC/aaA																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220528	123220529	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	165	270	0	ENST00000218089.9:c.3187dup	p.Ile1063AsnfsTer11	p.I1063Nfs*11	ENST00000218089	NM_001042749.1	1062	gga/ggAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0047574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	23	726	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	32	860	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860138	57860138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	84	699	1	ENST00000228682.2:c.878G>A	p.Arg293His	p.R293H	ENST00000228682	NM_005269.2	293	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199442	16199442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	33	304	0	ENST00000375759.3:c.215G>C	p.Arg72Thr	p.R72T	ENST00000375759	NM_015001.2	72	aGa/aCa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858973	57858973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	52	765	0	ENST00000228682.2:c.469C>T	p.His157Tyr	p.H157Y	ENST00000228682	NM_005269.2	157	Cat/Tat																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562899	21562899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	70	888	0	ENST00000382592.4:c.1020C>G	p.Ser340Arg	p.S340R	ENST00000382592	NM_014572.2	340	agC/agG																																																																														
CCNE1	898	MSKCC	GRCh37	19	30314568	30314568	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	42	533	0	ENST00000262643.3:c.1117G>C	p.Ala373Pro	p.A373P	ENST00000262643	NM_001238.2	373	Gcc/Ccc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030672	48030672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	38	383	0	ENST00000234420.5:c.3286C>A	p.His1096Asn	p.H1096N	ENST00000234420	NM_000179.2	1096	Cat/Aat																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794406	242794406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	78	926	0	ENST00000334409.5:c.536G>A	p.Gly179Asp	p.G179D	ENST00000334409	NM_005018.2	179	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0047577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	438	898	1	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189909	66189909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	21	362	0	ENST00000273854.3:c.3037G>T	p.Val1013Phe	p.V1013F	ENST00000273854	NM_004439.5	1013	Gtc/Ttc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443585	52443585	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	194	607	0	ENST00000460680.1:c.107A>G	p.Gln36Arg	p.Q36R	ENST00000460680	NM_004656.3	36	cAg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	627	624	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40376853	40376853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	156	502	0	ENST00000293328.3:c.319C>T	p.Arg107Cys	p.R107C	ENST00000293328	NM_012448.3	107	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808045	3808045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	84	271	0	ENST00000262367.5:c.3374A>G	p.Tyr1125Cys	p.Y1125C	ENST00000262367	NM_004380.2	1125	tAt/tGt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661616	227661616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	225	728	0	ENST00000305123.5:c.1839G>A	p.Met613Ile	p.M613I	ENST00000305123	NM_005544.2	613	atG/atA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023017	27023027	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCAGCGG	GGCGGCAGCGG	-			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	61	33	0	ENST00000324856.7:c.123_133del	p.Ala42ArgfsTer65	p.A42Rfs*65	ENST00000324856	NM_006015.4	41	gcGGCGGCAGCGGcc/gccc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67670755	67670755	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	288	345	0	ENST00000264010.4:c.1999+1del		p.X667_splice	ENST00000264010	NM_006565.3	667																																																																															
BRD4	23476	MSKCC	GRCh37	19	15349756	15349756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	256	825	2	ENST00000263377.2:c.3818G>A	p.Arg1273Gln	p.R1273Q	ENST00000263377	NM_058243.2	1273	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916780	178916780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	97	305	0	ENST00000263967.3:c.167A>G	p.Tyr56Cys	p.Y56C	ENST00000263967	NM_006218.2	56	tAc/tGc																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538787	23538787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	255	364	0	ENST00000380871.4:c.652C>A	p.Pro218Thr	p.P218T	ENST00000380871	NM_006167.3	218	Cct/Act																																																																														
TEK	7010	MSKCC	GRCh37	9	27197353	27197353	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	93	436	0	ENST00000380036.4:c.1665T>G	p.Ser555Arg	p.S555R	ENST00000380036	NM_000459.3	555	agT/agG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747089	40747089	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	50	543	0	ENST00000373198.4:c.2993A>C	p.Asn998Thr	p.N998T	ENST00000373198	NM_133170.3	998	aAc/aCc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729579	41729579	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	157	561	0	ENST00000242208.4:c.950A>C	p.Lys317Thr	p.K317T	ENST00000242208	NM_002192.2	317	aAg/aCg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259234	16259234	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	80	910	0	ENST00000375759.3:c.6499A>C	p.Lys2167Gln	p.K2167Q	ENST00000375759	NM_015001.2	2167	Aag/Cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094345	27094346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			679	265	1010	0	ENST00000324856.7:c.3054dup	p.Glu1019Ter	p.E1019*	ENST00000324856	NM_006015.4	1018	cct/ccTt																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46597561	46597562	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			949	50	933	0	ENST00000262741.5:c.63dup	p.Tyr22LeufsTer10	p.Y22Lfs*10	ENST00000262741	NM_003629.3	21	-/C																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115961	8115972	+	inframe_deletion	In_Frame_Del	DEL	CCAGCATGGTCA	CCAGCATGGTCA	-			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			770	234	803	0	ENST00000346208.3:c.1309_1320del	p.Ser437_Thr440del	p.S437_T440del	ENST00000346208		436	tCCAGCATGGTCAcc/tcc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114901013	114901013	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			764	78	1115	0	ENST00000543371.1:c.623A>G	p.Asn208Ser	p.N208S	ENST00000543371	NM_001198531.1	208	aAt/aGt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457722	67457722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			616	53	822	1	ENST00000327367.4:c.532G>A	p.Glu178Lys	p.E178K	ENST00000327367	NM_005902.3	178	Gag/Aag																																																																														
CD276	80381	MSKCC	GRCh37	15	73996276	73996276	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			22	18	30	0	ENST00000318443.5:c.1010G>C	p.Ser337Thr	p.S337T	ENST00000318443	NM_001024736.1	337	aGc/aCc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	153	842	0	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209106832	209106832	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	357	1086	1	ENST00000345146.2:c.736T>C	p.Tyr246His	p.Y246H	ENST00000345146	NM_005896.2	246	Tat/Cat																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164691	36164691	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	275	1173	0	ENST00000300305.3:c.1184del	p.Pro395ArgfsTer199	p.P395Rfs*199	ENST00000300305		395	cCg/cg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119585476	119585476	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	89	591	0	ENST00000316626.5:c.910-1G>A		p.X304_splice	ENST00000316626		304																																																																															
ATR	545	MSKCC	GRCh37	3	142272097	142272097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			818	52	826	0	ENST00000350721.4:c.2777T>C	p.Phe926Ser	p.F926S	ENST00000350721	NM_001184.3	926	tTc/tCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538297	187538297	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	86	926	0	ENST00000441802.2:c.8937T>G	p.Tyr2979Ter	p.Y2979*	ENST00000441802	NM_005245.3	2979	taT/taG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	210	447	0				ENST00000310581	NM_198253.2																																																																																
RAD50	10111	MSKCC	GRCh37	5	131925491	131925491	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	45	634	0	ENST00000265335.6:c.1414G>C	p.Asp472His	p.D472H	ENST00000265335		472	Gac/Cac																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460576	149460576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			788	60	998	0	ENST00000286301.3:c.61C>T	p.Pro21Ser	p.P21S	ENST00000286301	NM_005211.3	21	Cca/Tca																																																																														
PRDM1	639	MSKCC	GRCh37	6	106543497	106543497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	29	500	0	ENST00000369096.4:c.299G>C	p.Gly100Ala	p.G100A	ENST00000369096	NM_001198.3	100	gGa/gCa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035212	6035212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			804	44	801	0	ENST00000265849.7:c.856G>A	p.Asp286Asn	p.D286N	ENST00000265849	NM_000535.5	286	Gac/Aac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484310	8484310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	39	878	0	ENST00000356435.5:c.3222C>A	p.Asn1074Lys	p.N1074K	ENST00000356435		1074	aaC/aaA																																																																														
MED12	9968	MSKCC	GRCh37	X	70342723	70342723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	59	682	1	ENST00000374080.3:c.1484A>T	p.Glu495Val	p.E495V	ENST00000374080		495	gAg/gTg																																																																														
XIAP	331	MSKCC	GRCh37	X	123020196	123020196	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	224	942	0	ENST00000355640.3:c.684C>G	p.Phe228Leu	p.F228L	ENST00000355640		228	ttC/ttG																																																																														
XIAP	331	MSKCC	GRCh37	X	123020270	123020270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	201	846	0	ENST00000355640.3:c.758C>T	p.Ser253Leu	p.S253L	ENST00000355640		253	tCa/tTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123211837	123211837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	152	575	2	ENST00000218089.9:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000218089	NM_001042749.1	902	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70361172	70361172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	45	859	3	ENST00000374080.3:c.6360G>C	p.Gln2120His	p.Q2120H	ENST00000374080		2120	caG/caC																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045888	47045888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	99	397	1	ENST00000329236.7:c.2449C>T	p.Arg817Trp	p.R817W	ENST00000329236	NM_001204466.1	817	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			666	200	780	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	77	238	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31389135	31389135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	100	627	0	ENST00000328111.2:c.2048G>A	p.Arg683His	p.R683H	ENST00000328111	NM_006892.3	683	cGc/cAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022388	31022388	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	65	433	0	ENST00000375687.4:c.1873C>T	p.Arg625Ter	p.R625*	ENST00000375687	NM_015338.5	625	Cga/Tga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349730	15349730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			762	115	744	0	ENST00000263377.2:c.3844C>T	p.Arg1282Cys	p.R1282C	ENST00000263377	NM_058243.2	1282	Cgc/Tgc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185165687	185165687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	150	440	0	ENST00000265026.3:c.962C>T	p.Ala321Val	p.A321V	ENST00000265026	NM_004721.4	321	gCg/gTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779343	3779343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	344	802	1	ENST00000262367.5:c.5705C>T	p.Thr1902Met	p.T1902M	ENST00000262367	NM_004380.2	1902	aCg/aTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911508	134911508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201816783		P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			829	59	686	0	ENST00000398015.3:c.1973C>T	p.Ser658Leu	p.S658L	ENST00000398015	NM_004441.4	658	tCg/tTg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			828	242	941	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			944	92	857	4	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134569	2134569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			990	122	831	4	ENST00000219476.3:c.4351del	p.Arg1451AlafsTer25	p.R1451Afs*25	ENST00000219476	NM_000548.3	1449	tCc/tc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625302	69625302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			899	99	842	0	ENST00000334134.2:c.491G>A	p.Arg164His	p.R164H	ENST00000334134	NM_005247.2	164	cGc/cAc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475282	40475282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	203	606	1	ENST00000264657.5:c.1744G>A	p.Glu582Lys	p.E582K	ENST00000264657	NM_139276.2	582	Gaa/Aaa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40491387	40491387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			855	101	760	1	ENST00000264657.5:c.413C>T	p.Thr138Met	p.T138M	ENST00000264657	NM_139276.2	138	aCg/aTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098489	11098489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	127	348	1	ENST00000344626.4:c.1007C>T	p.Pro336Leu	p.P336L	ENST00000344626	NM_003072.3	336	cCg/cTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120461984	120461984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	185	620	1	ENST00000256646.2:c.5732G>A	p.Arg1911His	p.R1911H	ENST00000256646	NM_024408.3	1911	cGc/cAc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14042145	14042145	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	185	368	0	ENST00000311895.7:c.2692T>A	p.Tyr898Asn	p.Y898N	ENST00000311895	NM_005236.2	898	Tat/Aat																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656981	47656984	+	frameshift_variant	Frame_Shift_Del	DEL	AAGT	AAGT	-			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	85	424	0	ENST00000233146.2:c.1177_1180del	p.Lys393PhefsTer18	p.K393Ffs*18	ENST00000233146	NM_000251.2	393	AAGTtt/tt																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128036864	128036865	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			793	106	722	0	ENST00000285398.2:c.1614dup	p.Asn539GlnfsTer4	p.N539Qfs*4	ENST00000285398	NM_000122.1	538	-/C																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40979283	40979283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146000056		P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			750	92	620	0	ENST00000373198.4:c.1850G>A	p.Arg617Gln	p.R617Q	ENST00000373198	NM_133170.3	617	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295168	1295168	+	upstream_gene_variant	5'Flank	DEL	C	C	-			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	50	172	0				ENST00000310581	NM_198253.2																																																																																
MSH3	4437	MSKCC	GRCh37	5	80063779	80063779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	57	513	0	ENST00000265081.6:c.1924G>A	p.Val642Ile	p.V642I	ENST00000265081	NM_002439.4	642	Gtc/Atc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410990	63410990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046590-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	132	386	0	ENST00000330258.3:c.2177C>T	p.Ala726Val	p.A726V	ENST00000330258	NM_152424.3	726	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	120	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	27	257	0				ENST00000310581	NM_198253.2																																																																																
NF2	4771	MSKCC	GRCh37	22	30035169	30035169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	82	434	0	ENST00000338641.4:c.331C>T	p.Gln111Ter	p.Q111*	ENST00000338641	NM_000268.3	111	Cag/Tag																																																																														
EP300	2033	MSKCC	GRCh37	22	41551085	41551085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	118	548	0	ENST00000263253.7:c.3229C>T	p.Gln1077Ter	p.Q1077*	ENST00000263253	NM_001429.3	1077	Caa/Taa																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871813	12871813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	140	265	0	ENST00000228872.4:c.530G>T	p.Gly177Val	p.G177V	ENST00000228872	NM_004064.3	177	gGt/gTt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435721	110435769	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGGCGCGTGGGCCTCACCGCCCGGCCGCGCTGGCCCAAGAAGCCCTC	ACAGGCGCGTGGGCCTCACCGCCCGGCCGCGCTGGCCCAAGAAGCCCTC	-			P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	76	300	0	ENST00000375856.3:c.2632_2680del	p.Glu878ProfsTer86	p.E878Pfs*86	ENST00000375856	NM_003749.2	878	GAGGGCTTCTTGGGCCAGCGCGGCCGGGCGGTGAGGCCCACGCGCCTGTcc/cc																																																																														
MGA	23269	MSKCC	GRCh37	15	41991122	41991122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	19	363	0	ENST00000219905.7:c.2075C>T	p.Ser692Leu	p.S692L	ENST00000219905	NM_001164273.1	692	tCa/tTa																																																																														
BLM	641	MSKCC	GRCh37	15	91354433	91354433	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs150421256		P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	24	361	0	ENST00000355112.3:c.3875-2A>G		p.X1292_splice	ENST00000355112	NM_000057.2	1292																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58678062	58678062	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	91	305	0	ENST00000305921.3:c.287C>A	p.Ser96Tyr	p.S96Y	ENST00000305921	NM_003620.3	96	tCc/tAc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248672	212248672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	64	451	0	ENST00000342788.4:c.3595G>C	p.Glu1199Gln	p.E1199Q	ENST00000342788	NM_005235.2	1199	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916669	178916669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	17	295	0	ENST00000263967.3:c.56G>A	p.Arg19Lys	p.R19K	ENST00000263967	NM_006218.2	19	aGa/aAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55970834	55970834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	53	467	0	ENST00000263923.4:c.1963G>T	p.Val655Leu	p.V655L	ENST00000263923	NM_002253.2	655	Gtg/Ttg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270102	66270102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	22	286	0	ENST00000273854.3:c.1780C>T	p.Leu594Phe	p.L594F	ENST00000273854	NM_004439.5	594	Ctc/Ttc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950249	38950249	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	33	327	0	ENST00000357387.3:c.3701C>G	p.Ser1234Ter	p.S1234*	ENST00000357387	NM_152756.3	1234	tCa/tGa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672392	30672392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046822-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			705	190	698	1	ENST00000376406.3:c.4568C>A	p.Ser1523Tyr	p.S1523Y	ENST00000376406	NM_014641.2	1523	tCt/tAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37873715	37873715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	204	812	1	ENST00000269571.5:c.1880C>T	p.Pro627Leu	p.P627L	ENST00000269571		627	cCc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	71	540	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	163	907	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	96	521	1	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041007	47041007	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	115	436	0	ENST00000329236.7:c.1303G>T	p.Glu435Ter	p.E435*	ENST00000329236	NM_001204466.1	435	Gag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66942786	66942786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs9332971		P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			99	100	310	1	ENST00000374690.3:c.2567G>A	p.Arg856His	p.R856H	ENST00000374690	NM_000044.3	856	cGc/cAc																																																																														
RET	5979	MSKCC	GRCh37	10	43613888	43613888	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	73	855	1	ENST00000355710.3:c.2354del	p.Pro785HisfsTer84	p.P785Hfs*84	ENST00000355710	NM_020975.4	784	caC/ca																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112769051	112769051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	11	611	1	ENST00000369452.4:c.1330C>T	p.Leu444Phe	p.L444F	ENST00000369452	NM_007373.3	444	Ctt/Ttt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204925	94204925	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	26	507	0	ENST00000323929.3:c.660G>T	p.Arg220Ser	p.R220S	ENST00000323929	NM_005591.3	220	agG/agT																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319080	62319080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	143	944	0	ENST00000508582.2:c.1510G>T	p.Gly504Cys	p.G504C	ENST00000508582		504	Ggc/Tgc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508695	106508695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047031-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	99	682	1	ENST00000359195.3:c.689G>T	p.Ser230Ile	p.S230I	ENST00000359195	NM_002649.2	230	aGc/aTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	83	520	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76855971	76855971	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	84	631	0	ENST00000373344.5:c.5629C>T	p.Gln1877Ter	p.Q1877*	ENST00000373344	NM_000489.3	1877	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100075	27100075	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	162	715	1	ENST00000324856.7:c.3871G>T	p.Glu1291Ter	p.E1291*	ENST00000324856	NM_006015.4	1291	Gag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40789994	40789994	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	93	538	2	ENST00000373198.4:c.2737G>A	p.Glu913Lys	p.E913K	ENST00000373198	NM_133170.3	913	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	223	263	1				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49415628	49415628	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	29	463	0	ENST00000301067.7:c.16549G>C	p.Glu5517Gln	p.E5517Q	ENST00000301067	NM_003482.3	5517	Gag/Cag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5225855	5225855	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	135	627	0	ENST00000357368.4:c.2377G>A	p.Glu793Lys	p.E793K	ENST00000357368	NM_002850.3	793	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099050	27099050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	136	559	0	ENST00000324856.7:c.3466G>C	p.Glu1156Gln	p.E1156Q	ENST00000324856	NM_006015.4	1156	Gaa/Caa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099340	27099340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	113	649	0	ENST00000324856.7:c.3577G>C	p.Asp1193His	p.D1193H	ENST00000324856	NM_006015.4	1193	Gat/Cat																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870356	155870356	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	126	585	0	ENST00000368323.3:c.483T>G	p.Phe161Leu	p.F161L	ENST00000368323	NM_006912.5	161	ttT/ttG																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132935	64132935	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	120	486	0	ENST00000334205.4:c.1069C>T	p.Gln357Ter	p.Q357*	ENST00000334205	NM_003942.2	357	Cag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298056	15298056	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	193	831	1	ENST00000263388.2:c.1700C>G	p.Ser567Ter	p.S567*	ENST00000263388	NM_000435.2	567	tCa/tGa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905057	50905062	+	inframe_deletion	In_Frame_Del	DEL	GGGGCC	GGGGCC	-			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	150	675	0	ENST00000440232.2:c.339_344del	p.Gly114_Pro115del	p.G114_P115del	ENST00000440232	NM_002691.3	113	ggGGGGCCc/ggc																																																																														
ATR	545	MSKCC	GRCh37	3	142168420	142168420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	81	458	0	ENST00000350721.4:c.7786G>C	p.Glu2596Gln	p.E2596Q	ENST00000350721	NM_001184.3	2596	Gag/Cag																																																																														
MED12	9968	MSKCC	GRCh37	X	70342123	70342123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	142	607	0	ENST00000374080.3:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000374080		392	tCa/tTa																																																																														
MED12	9968	MSKCC	GRCh37	X	70343561	70343561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	123	621	0	ENST00000374080.3:c.1735C>T	p.Pro579Ser	p.P579S	ENST00000374080		579	Ccc/Tcc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0047596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	507	486	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032120	10032120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	111	542	1	ENST00000330684.3:c.703G>A	p.Glu235Lys	p.E235K	ENST00000330684	NM_001134407.1	235	Gag/Aag																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	259	634	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932479	39932479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	169	308	0	ENST00000378444.4:c.2120C>T	p.Pro707Leu	p.P707L	ENST00000378444	NM_001123385.1	707	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0047596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	74	204	0				ENST00000310581	NM_198253.2																																																																																
ATRX	546	MSKCC	GRCh37	X	76874407	76874407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	67	175	0	ENST00000373344.5:c.5315C>T	p.Ser1772Phe	p.S1772F	ENST00000373344	NM_000489.3	1772	tCc/tTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106196370	106196370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	84	316	0	ENST00000380013.4:c.4703C>T	p.Pro1568Leu	p.P1568L	ENST00000380013	NM_001127208.2	1568	cCa/cTa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325189	123325189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	125	482	0	ENST00000358487.5:c.139C>T	p.Pro47Ser	p.P47S	ENST00000358487	NM_000141.4	47	Cca/Tca																																																																														
POLE	5426	MSKCC	GRCh37	12	133234501	133234502	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0047596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	141	525	1	ENST00000320574.5:c.3330_3331delinsTT	p.Arg1111Trp	p.R1111W	ENST00000320574	NM_006231.2	1110	ctCCgg/ctTTgg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588644	28588644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	106	371	0	ENST00000241453.7:c.2804C>T	p.Ser935Phe	p.S935F	ENST00000241453	NM_004119.2	935	tCc/tTc																																																																														
MET	4233	MSKCC	GRCh37	7	116380979	116380979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	251	550	1	ENST00000397752.3:c.1601C>T	p.Pro534Leu	p.P534L	ENST00000397752	NM_000245.2	534	cCc/cTc																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23539042	23539042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	73	504	0	ENST00000380871.4:c.397C>T	p.His133Tyr	p.H133Y	ENST00000380871	NM_006167.3	133	Cac/Tac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862850	9862850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	332	666	0	ENST00000330684.3:c.2453C>T	p.Ala818Val	p.A818V	ENST00000330684	NM_001134407.1	818	gCg/gTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401817	139401817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	246	764	3	ENST00000277541.6:c.3583G>T	p.Gly1195Trp	p.G1195W	ENST00000277541	NM_017617.3	1195	Ggg/Tgg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593586	55593604	+	protein_altering_variant	In_Frame_Del	DEL	CCATGTATGAAGTACAGTG	CCATGTATGAAGTACAGTG	T			P-0047600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	290	385	0	ENST00000288135.5:c.1652_1670delinsT	p.Pro551_Trp557delinsLeu	p.P551_W557delinsL	ENST00000288135	NM_000222.2	551	cCCATGTATGAAGTACAGTGg/cTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	63	418	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	91	375	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MPL	4352	MSKCC	GRCh37	1	43804953	43804953	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	48	517	1	ENST00000372470.3:c.408del	p.Ser137ValfsTer29	p.S137Vfs*29	ENST00000372470	NM_005373.2	135	Ccc/cc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	116	525	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023327	27023327	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	26	112	0	ENST00000324856.7:c.437del	p.Pro146GlnfsTer86	p.P146Qfs*86	ENST00000324856	NM_006015.4	145	Ccc/cc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	30	284	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930634	32930634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	31	405	0	ENST00000380152.3:c.7505G>A	p.Arg2502His	p.R2502H	ENST00000380152		2502	cGc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221131	5221131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201447856		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	133	1068	3	ENST00000357368.4:c.3335C>T	p.Thr1112Met	p.T1112M	ENST00000357368	NM_002850.3	1112	aCg/aTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291083	10291084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755889652		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	106	902	7	ENST00000340748.4:c.387dup	p.Lys130GlnfsTer19	p.K130Qfs*19	ENST00000340748		129	-/C																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737820	145737820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36023964		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	129	1124	1	ENST00000428558.2:c.3010C>T	p.Arg1004Trp	p.R1004W	ENST00000428558	NM_004260.3	1004	Cgg/Tgg																																																																														
ARAF	369	MSKCC	GRCh37	X	47424734	47424734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	106	880	1	ENST00000377045.4:c.547delC	p.Gln183ArgfsTer109	p.Q183Rfs*109	ENST00000377045	NM_001654.4	181	aCc/ac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188853	32188853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192478549		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	85	1011	0	ENST00000375023.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000375023	NM_004557.3	234	cGg/cAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	37	430	0	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	127	1016	3	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933013	39933013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	51	1021	1	ENST00000378444.4:c.1586del	p.Asn529ThrfsTer60	p.N529Tfs*60	ENST00000378444	NM_001123385.1	529	aAc/ac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255694	16255694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	83	530	0	ENST00000375759.3:c.2959C>T	p.Arg987Cys	p.R987C	ENST00000375759	NM_015001.2	987	Cgc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255563	16255563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	38	569	2	ENST00000375759.3:c.2828A>G	p.Lys943Arg	p.K943R	ENST00000375759	NM_015001.2	943	aAg/aGg																																																																														
AKT1	207	MSKCC	GRCh37	14	105241276	105241276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	116	989	0	ENST00000349310.3:c.632C>T	p.Thr211Ile	p.T211I	ENST00000349310	NM_001014432.1	211	aCa/aTa																																																																														
XIAP	331	MSKCC	GRCh37	X	123040864	123040864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	121	679	0	ENST00000355640.3:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000355640		443	Cgc/Tgc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	48	773	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	82	811	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49441816	49441816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	52	852	2	ENST00000301067.7:c.4168del	p.Ala1390GlnfsTer27	p.A1390Qfs*27	ENST00000301067	NM_003482.3	1390	Gca/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444933	49444933	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	50	909	4	ENST00000301067.7:c.2533del	p.Arg845GlyfsTer85	p.R845Gfs*85	ENST00000301067	NM_003482.3	845	Cgg/gg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197307	94197308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	86	391	0	ENST00000323929.3:c.1196dup	p.Arg400GlnfsTer3	p.R400Qfs*3	ENST00000323929	NM_005591.3	399	ttc/ttTc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323268	31323268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	37	624	0	ENST00000412585.2:c.721T>C	p.Trp241Arg	p.W241R	ENST00000412585	NM_005514.6	241	Tgg/Cgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714412	40714412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	92	745	0	ENST00000373198.4:c.3985G>A	p.Glu1329Lys	p.E1329K	ENST00000373198	NM_133170.3	1329	Gag/Aag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370847	55370847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	61	545	2	ENST00000297316.4:c.149C>T	p.Ala50Val	p.A50V	ENST00000297316	NM_022454.3	50	gCg/gTg																																																																														
AXL	558	MSKCC	GRCh37	19	41765647	41765647	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	151	1072	2	ENST00000301178.4:c.2528del	p.Pro843GlnfsTer113	p.P843Qfs*113	ENST00000301178	NM_021913.4	841	gaC/ga																																																																														
MPL	4352	MSKCC	GRCh37	1	43815020	43815041	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCACACTACAGGTACCGCCCCC	GCACACTACAGGTACCGCCCCC	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	114	761	0	ENST00000372470.3:c.1557_1565+13del		p.X519_splice	ENST00000372470	NM_005373.2	519																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099341	193099341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	79	281	0	ENST00000367435.3:c.275A>G	p.Lys92Arg	p.K92R	ENST00000367435	NM_024529.4	92	aAa/aGa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982157	201982157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	140	1010	0	ENST00000359651.3:c.681C>A	p.Phe227Leu	p.F227L	ENST00000359651		227	ttC/ttA																																																																														
FH	2271	MSKCC	GRCh37	1	241667515	241667515	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	58	226	0	ENST00000366560.3:c.935T>C	p.Phe312Ser	p.F312S	ENST00000366560	NM_000143.3	312	tTt/tCt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118347526	118347527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	105	442	0	ENST00000534358.1:c.3166dup	p.Ser1056LysfsTer2	p.S1056Kfs*2	ENST00000534358	NM_005933.3	1055	gaa/gAaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445238	49445238	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	109	1247	0	ENST00000301067.7:c.2228T>C	p.Leu743Pro	p.L743P	ENST00000301067	NM_003482.3	743	cTg/cCg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30194790	30194791	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	124	626	0	ENST00000331968.5:c.354dup	p.Ala119SerfsTer4	p.A119Sfs*4	ENST00000331968	NM_002742.2	118	-/A																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43699749	43699750	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	76	533	0	ENST00000382044.4:c.5765_5766del	p.Phe1922Ter	p.F1922*	ENST00000382044	NM_001141980.1	1922	tTT/t																																																																														
FLCN	201163	MSKCC	GRCh37	17	17122362	17122362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	68	836	0	ENST00000285071.4:c.1033G>T	p.Val345Phe	p.V345F	ENST00000285071	NM_144997.5	345	Gtc/Ttc																																																																														
YES1	7525	MSKCC	GRCh37	18	756562	756562	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	137	395	0	ENST00000314574.4:c.266T>C	p.Leu89Ser	p.L89S	ENST00000314574	NM_005433.3	89	tTa/tCa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221126	5221126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	114	1058	0	ENST00000357368.4:c.3340A>G	p.Thr1114Ala	p.T1114A	ENST00000357368	NM_002850.3	1114	Acc/Gcc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15311608	15311608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	24	193	1	ENST00000263388.2:c.109G>T	p.Gly37Trp	p.G37W	ENST00000263388	NM_000435.2	37	Ggg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714693	52714693	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	157	1045	0	ENST00000322088.6:c.451T>A	p.Phe151Ile	p.F151I	ENST00000322088	NM_014225.5	151	Ttc/Atc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206707	36206707	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	72	1074	0	ENST00000300305.3:c.805G>T	p.Asp269Tyr	p.D269Y	ENST00000300305		269	Gat/Tat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098538	47098538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	42	699	0	ENST00000409792.3:c.6736G>A	p.Gly2246Ser	p.G2246S	ENST00000409792	NM_014159.6	2246	Ggt/Agt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162778	47162778	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	70	422	0	ENST00000409792.3:c.3348del	p.Lys1116AsnfsTer5	p.K1116Nfs*5	ENST00000409792	NM_014159.6	1116	aaA/aa																																																																														
MITF	4286	MSKCC	GRCh37	3	69928438	69928438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	60	812	0	ENST00000352241.4:c.258G>A	p.Met86Ile	p.M86I	ENST00000352241	NM_198159.2	86	atG/atA																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873118	134873118	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	84	759	0	ENST00000398015.3:c.1422G>T	p.Lys474Asn	p.K474N	ENST00000398015	NM_004441.4	474	aaG/aaT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916904	178916905	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	53	503	0	ENST00000263967.3:c.296dup	p.Leu99PhefsTer5	p.L99Ffs*5	ENST00000263967	NM_006218.2	97	-/T																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323979	31323979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	71	732	0	ENST00000412585.2:c.584A>G	p.Tyr195Cys	p.Y195C	ENST00000412585	NM_005514.6	195	tAc/tGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522125	157522125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	113	865	3	ENST00000346085.5:c.4397C>T	p.Ala1466Val	p.A1466V	ENST00000346085	NM_020732.3	1466	gCa/gTa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146133	38146133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	131	918	1	ENST00000317025.8:c.3373C>T	p.Pro1125Ser	p.P1125S	ENST00000317025	NM_023034.1	1125	Ccg/Tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	322	739	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435631	149435631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	146	628	0	ENST00000286301.3:c.2512G>A	p.Val838Ile	p.V838I	ENST00000286301	NM_005211.3	838	Gtc/Atc																																																																														
MITF	4286	MSKCC	GRCh37	3	69987025	69987025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	63	551	0	ENST00000352241.4:c.407G>A	p.Arg136Gln	p.R136Q	ENST00000352241	NM_198159.2	136	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557909	187557909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	155	537	2	ENST00000441802.2:c.3802C>T	p.Arg1268Trp	p.R1268W	ENST00000441802	NM_005245.3	1268	Cgg/Tgg																																																																														
FYN	2534	MSKCC	GRCh37	6	112020775	112020775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	130	434	0	ENST00000368678.4:c.796C>T	p.Arg266Cys	p.R266C	ENST00000368678		266	Cgt/Tgt																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	48	363	4	ENST00000462284.1:c.961delC	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572261	64572261	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	133	455	2	ENST00000337652.1:c.1393C>T	p.Arg465Ter	p.R465*	ENST00000337652	NM_130803.2	465	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097630	27097630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	206	535	0	ENST00000324856.7:c.3219G>A	p.Trp1073Ter	p.W1073*	ENST00000324856	NM_006015.4	1073	tgG/tgA																																																																														
MST1R	4486	MSKCC	GRCh37	3	49924822	49924822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202007332		P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	92	822	0	ENST00000296474.3:c.4121G>A	p.Arg1374His	p.R1374H	ENST00000296474	NM_002447.2	1374	cGt/cAt																																																																														
MST1	4485	MSKCC	GRCh37	3	49723126	49723128	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	64	483	0	ENST00000449682.2:c.1288_1290delGAG	p.Glu430del	p.E430del	ENST00000449682	NM_020998.3	430	GAG/-																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651096	206651096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	91	620	0	ENST00000367120.3:c.706C>T	p.Arg236Trp	p.R236W	ENST00000367120	NM_014002.3	236	Cgg/Tgg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851456	63851456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201542647		P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	320	500	1	ENST00000279873.7:c.2234C>T	p.Ala745Val	p.A745V	ENST00000279873	NM_032199.2	745	gCg/gTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855831	45855831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	310	688	0	ENST00000391945.4:c.1979C>T	p.Ala660Val	p.A660V	ENST00000391945	NM_000400.3	660	gCg/gTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70446279	70446279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	172	553	0	ENST00000373644.4:c.5219G>A	p.Arg1740His	p.R1740H	ENST00000373644	NM_030625.2	1740	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425644	49425644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	253	796	0	ENST00000301067.7:c.12844C>T	p.Arg4282Ter	p.R4282*	ENST00000301067	NM_003482.3	4282	Cga/Tga																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008324	29008324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	124	338	0	ENST00000282397.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000282397	NM_002019.4	183	Cgc/Tgc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163309260	163309260	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	35	343	1	ENST00000271452.3:c.604del	p.Thr202ArgfsTer2	p.T202Rfs*2	ENST00000271452	NM_145697.2	200	cAa/ca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342776	118342776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	25	310	0	ENST00000534358.1:c.902G>A	p.Arg301Gln	p.R301Q	ENST00000534358	NM_005933.3	301	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151917610	151917610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	67	529	0	ENST00000262189.6:c.3710G>A	p.Arg1237Gln	p.R1237Q	ENST00000262189	NM_170606.2	1237	cGa/cAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261683	16261683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149575630		P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	244	599	0	ENST00000375759.3:c.8948C>T	p.Thr2983Met	p.T2983M	ENST00000375759	NM_015001.2	2983	aCg/aTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914152	32914152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	154	477	1	ENST00000380152.3:c.5660C>T	p.Thr1887Met	p.T1887M	ENST00000380152		1887	aCg/aTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865611	57865611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	283	831	0	ENST00000228682.2:c.3088G>A	p.Glu1030Lys	p.E1030K	ENST00000228682	NM_005269.2	1030	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777801	3777801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1213	99	880	0	ENST00000262367.5:c.7247G>A	p.Ser2416Asn	p.S2416N	ENST00000262367	NM_004380.2	2416	aGc/aAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845261	151845261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	195	473	0	ENST00000262189.6:c.13751G>A	p.Arg4584Gln	p.R4584Q	ENST00000262189	NM_170606.2	4584	cGg/cAg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061593	38061622	+	inframe_deletion	In_Frame_Del	DEL	GGCCGCGTAGGGGCCCAGGCCATTCATGGA	GGCCGCGTAGGGGCCCAGGCCATTCATGGA	-			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	19	90	0	ENST00000250448.2:c.367_396del	p.Ser123_Ala132del	p.S123_A132del	ENST00000250448	NM_004496.3	123	TCCATGAATGGCCTGGGCCCCTACGCGGCC/-																																																																														
APC	324	MSKCC	GRCh37	5	112102982	112102982	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201764637		P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	159	453	1	ENST00000257430.4:c.317G>A	p.Arg106His	p.R106H	ENST00000257430	NM_000038.5	106	cGt/cAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362545	118362545	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	114	456	0	ENST00000534358.1:c.4906C>T	p.Arg1636Ter	p.R1636*	ENST00000534358	NM_005933.3	1636	Cga/Tga																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2492147	2492147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	140	627	0	ENST00000355716.4:c.545A>G	p.Gln182Arg	p.Q182R	ENST00000355716	NM_003820.2	182	cAg/cGg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939141	36939141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	307	791	0	ENST00000361632.4:c.568C>T	p.Arg190Cys	p.R190C	ENST00000361632		190	Cgc/Tgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332611	65332611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	39	382	0	ENST00000342505.4:c.928G>A	p.Val310Ile	p.V310I	ENST00000342505	NM_002227.2	310	Gtt/Att																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984347	201984361	+	inframe_deletion	In_Frame_Del	DEL	AAACGGGAGATCCTG	AAACGGGAGATCCTG	-			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	183	630	0	ENST00000359651.3:c.1012_1026del	p.Lys338_Leu342del	p.K338_L342del	ENST00000359651		338	AAACGGGAGATCCTG/-																																																																														
TET1	80312	MSKCC	GRCh37	10	70332981	70332981	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	77	734	0	ENST00000373644.4:c.886T>C	p.Cys296Arg	p.C296R	ENST00000373644	NM_030625.2	296	Tgc/Cgc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589636	69589636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	42	115	0	ENST00000168712.1:c.217G>A	p.Ala73Thr	p.A73T	ENST00000168712	NM_002007.2	73	Gcc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420688	49420688	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	227	579	1	ENST00000301067.7:c.15061C>T	p.Arg5021Ter	p.R5021*	ENST00000301067	NM_003482.3	5021	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428240	49428240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	112	715	2	ENST00000301067.7:c.10460C>A	p.Pro3487His	p.P3487H	ENST00000301067	NM_003482.3	3487	cCc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440161	49440161	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	60	608	0	ENST00000301067.7:c.4465T>C	p.Cys1489Arg	p.C1489R	ENST00000301067	NM_003482.3	1489	Tgt/Cgt																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50479307	50479307	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	36	319	0	ENST00000394963.4:c.155C>G	p.Pro52Arg	p.P52R	ENST00000394963	NM_003076.4	52	cCg/cGg																																																																														
POLE	5426	MSKCC	GRCh37	12	133214639	133214639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	49	571	0	ENST00000320574.5:c.5639T>C	p.Val1880Ala	p.V1880A	ENST00000320574	NM_006231.2	1880	gTg/gCg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632602	3632602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	66	769	1	ENST00000294008.3:c.5246C>T	p.Ala1749Val	p.A1749V	ENST00000294008	NM_032444.2	1749	gCg/gTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68772297	68772297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	129	697	2	ENST00000261769.5:c.146G>A	p.Gly49Asp	p.G49D	ENST00000261769	NM_004360.3	49	gGc/gAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371698	89371698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	290	734	0	ENST00000301030.4:c.142G>A	p.Gly48Arg	p.G48R	ENST00000301030	NM_001256183.1	48	Ggg/Agg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5273533	5273533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	105	655	0	ENST00000357368.4:c.299G>A	p.Arg100Gln	p.R100Q	ENST00000357368	NM_002850.3	100	cGg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15273340	15273340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	68	700	0	ENST00000263388.2:c.5849A>G	p.Asn1950Ser	p.N1950S	ENST00000263388	NM_000435.2	1950	aAc/aGc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943675	17943675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	63	755	0	ENST00000458235.1:c.2414G>T	p.Gly805Val	p.G805V	ENST00000458235	NM_000215.3	805	gGt/gTt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026705	48026706	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	180	544	0	ENST00000234420.5:c.1583_1584del	p.Glu528GlyfsTer2	p.E528Gfs*2	ENST00000234420	NM_000179.2	528	gAA/g																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376214	225376214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	175	576	0	ENST00000264414.4:c.740G>A	p.Arg247Gln	p.R247Q	ENST00000264414	NM_003590.4	247	cGa/cAa																																																																														
RHOA	387	MSKCC	GRCh37	3	49405949	49405949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	67	546	1	ENST00000418115.1:c.189G>T	p.Gln63His	p.Q63H	ENST00000418115	NM_001664.2	63	caG/caT																																																																														
MITF	4286	MSKCC	GRCh37	3	70014110	70014110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	62	590	1	ENST00000352241.4:c.1274G>A	p.Cys425Tyr	p.C425Y	ENST00000352241	NM_198159.2	425	tGc/tAc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751570	57751570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	38	330	0	ENST00000274289.3:c.1421C>T	p.Thr474Ile	p.T474I	ENST00000274289	NM_006622.3	474	aCa/aTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631153	176631153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	54	534	0	ENST00000439151.2:c.1096G>A	p.Val366Met	p.V366M	ENST00000439151	NM_022455.4	366	Gtg/Atg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146046	38146046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	95	673	1	ENST00000317025.8:c.3460C>T	p.Arg1154Trp	p.R1154W	ENST00000317025	NM_023034.1	1154	Cgg/Tgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391467	139391467	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	90	752	1	ENST00000277541.6:c.6724C>A	p.Leu2242Met	p.L2242M	ENST00000277541	NM_017617.3	2242	Ctg/Atg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139410063	139410063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	341	747	3	ENST00000277541.6:c.1775G>A	p.Arg592His	p.R592H	ENST00000277541	NM_017617.3	592	cGc/cAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932303	39932303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	105	460	1	ENST00000378444.4:c.2296G>A	p.Glu766Lys	p.E766K	ENST00000378444	NM_001123385.1	766	Gag/Aag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228289	53228289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	413	351	0	ENST00000375401.3:c.2113C>T	p.Arg705Cys	p.R705C	ENST00000375401	NM_004187.3	705	Cgc/Tgc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0047603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	164	399	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47059132	47059132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	278	603	0	ENST00000409792.3:c.7529G>T	p.Arg2510Leu	p.R2510L	ENST00000409792	NM_014159.6	2510	cGc/cTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47155478	47155478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	107	412	0	ENST00000409792.3:c.4603A>G	p.Asn1535Asp	p.N1535D	ENST00000409792	NM_014159.6	1535	Aat/Gat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176700671	176700671	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0047603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	372	445	0	ENST00000439151.2:c.5510-2A>G		p.X1837_splice	ENST00000439151	NM_022455.4	1837																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652025	36652025	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	459	922	0	ENST00000244741.5:c.147G>A	p.Trp49Ter	p.W49*	ENST00000244741	NM_000389.4	49	tgG/tgA																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257854	19257854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	399	839	0	ENST00000162023.5:c.532G>A	p.Gly178Arg	p.G178R	ENST00000162023		178	Ggg/Agg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573537	48573537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	180	345	0	ENST00000342988.3:c.121G>A	p.Glu41Lys	p.E41K	ENST00000342988	NM_005359.5	41	Gaa/Aaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105505	11105516	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AATACCTCAATA	AATACCTCAATA	-			P-0047604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	252	568	0	ENST00000344626.4:c.1421_1432del	p.Glu474_Ser478delinsGly	p.E474_S478delinsG	ENST00000344626	NM_003072.3	474	gAATACCTCAATAgc/ggc																																																																														
TET2	54790	MSKCC	GRCh37	4	106193967	106193967	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	191	297	0	ENST00000380013.4:c.4429G>C	p.Glu1477Gln	p.E1477Q	ENST00000380013	NM_001127208.2	1477	Gaa/Caa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	2668	532	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857925	9857925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	116	811	1	ENST00000330684.3:c.3476G>A	p.Arg1159His	p.R1159H	ENST00000330684	NM_001134407.1	1159	cGc/cAc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041561	14041561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	126	592	0	ENST00000311895.7:c.2108G>T	p.Gly703Val	p.G703V	ENST00000311895	NM_005236.2	703	gGc/gTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905718	50905718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	60	953	0	ENST00000440232.2:c.766G>C	p.Val256Leu	p.V256L	ENST00000440232	NM_002691.3	256	Gtg/Ctg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0047618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	106	660	0	ENST00000275493.2:c.2314_2319dupCCCCAC	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																																																														
APC	324	MSKCC	GRCh37	5	112176212	112176212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	44	490	0	ENST00000257430.4:c.4921G>A	p.Val1641Met	p.V1641M	ENST00000257430	NM_000038.5	1641	Gtg/Atg																																																																														
RET	5979	MSKCC	GRCh37	10	43600549	43600549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	59	664	0	ENST00000355710.3:c.775C>T	p.Pro259Ser	p.P259S	ENST00000355710	NM_020975.4	259	Ccg/Tcg																																																																														
RET	5979	MSKCC	GRCh37	10	43620377	43620377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	51	591	0	ENST00000355710.3:c.2986C>T	p.Pro996Ser	p.P996S	ENST00000355710	NM_020975.4	996	Ccg/Tcg																																																																														
MGA	23269	MSKCC	GRCh37	15	42026793	42026793	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	50	370	0	ENST00000219905.7:c.3916+1G>A		p.X1306_splice	ENST00000219905	NM_001164273.1	1306																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14038638	14038638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	111	414	0	ENST00000311895.7:c.1963G>T	p.Asp655Tyr	p.D655Y	ENST00000311895	NM_005236.2	655	Gac/Tac																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164596	36164605	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCGA	GCGGCGGCGA	-			P-0047618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	29	543	0	ENST00000300305.3:c.1270_1279del	p.Ser424AlafsTer167	p.S424Afs*167	ENST00000300305		424	TCGCCGCCGCgc/gc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143226611	143226611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	60	409	0	ENST00000262992.4:c.503G>A	p.Arg168Lys	p.R168K	ENST00000262992	NM_001101669.1	168	aGa/aAa																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045979	26045979	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	45	493	0	ENST00000540144.1:c.341A>C	p.His114Pro	p.H114P	ENST00000540144	NM_003531.2	114	cAc/cCc																																																																														
HGF	3082	MSKCC	GRCh37	7	81336607	81336607	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0047618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	48	375	0	ENST00000222390.5:c.1615C>T	p.Arg539Ter	p.R539*	ENST00000222390	NM_000601.4	539	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499808	8499808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	76	531	0	ENST00000356435.5:c.2161G>C	p.Glu721Gln	p.E721Q	ENST00000356435		721	Gag/Cag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218397	36218429	+	protein_altering_variant	In_Frame_Del	DEL	GTGTGCTGGGGCAGCGCAGCCCCGCTGGCGAGA	GTGTGCTGGGGCAGCGCAGCCCCGCTGGCGAGA	AGG			P-0047618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	75	808	6	ENST00000222270.7:c.4176_4208delinsAGG	p.Cys1393_Glu1403delinsGly	p.C1393_E1403delinsG	ENST00000222270	NM_014727.1	1392	ccGTGTGCTGGGGCAGCGCAGCCCCGCTGGCGAGAg/ccAGGg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	27	417	1	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510305	187510305	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	30	484	0	ENST00000441802.2:c.13208A>G	p.Tyr4403Cys	p.Y4403C	ENST00000441802	NM_005245.3	4403	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0047622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	133	925	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099429	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAACAG	CAGCAGCAGCAGCAGCAGCAGCAACAG	-	rs910569810		P-0047622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	24	292	0	ENST00000346085.5:c.360_386del	p.Gln123_Gln131del	p.Q123_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAACAG/-																																																																														
STK40	83931	MSKCC	GRCh37	1	36823941	36823941	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	50	917	0	ENST00000373129.3:c.241C>T	p.Gln81Ter	p.Q81*	ENST00000373129	NM_032017.1	81	Cag/Tag																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44527585	44527585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	54	473	0	ENST00000291552.4:c.20C>T	p.Ser7Phe	p.S7F	ENST00000291552	NM_006758.2	7	tCc/tTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	46	680	3	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	37	456	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526456	66526456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	42	611	0	ENST00000358598.2:c.1012A>G	p.Thr338Ala	p.T338A	ENST00000358598	NM_212471.2	338	Aca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022294-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	63	395	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573586	48573586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022294-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			154	54	223	0	ENST00000342988.3:c.170T>C	p.Leu57Ser	p.L57S	ENST00000342988	NM_005359.5	57	tTa/tCa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915334	32915335	+	splice_donor_variant	Splice_Site	INS	-	-	GC			P-0022294-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	110	587	0	ENST00000380152.3:c.6841+1_6841+2insGC		p.X2281_splice	ENST00000380152		2281																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937477	32937477	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022294-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	123	541	0	ENST00000380152.3:c.8140del	p.Gln2714LysfsTer19	p.Q2714Kfs*19	ENST00000380152		2713	aCc/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578518	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGTCTTGGC	CAGGTCTTGGC	-			P-0022294-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			768	256	994	0	ENST00000269305.4:c.412_422del	p.Ala138ProfsTer7	p.A138Pfs*7	ENST00000269305	NM_001126112.2	138	GCCAAGACCTGc/c																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471000	8471000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022294-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	65	283	0	ENST00000356435.5:c.3499G>C	p.Asp1167His	p.D1167H	ENST00000356435		1167	Gat/Cat																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852245	63852245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	628	831	3	ENST00000279873.7:c.3023C>T	p.Ala1008Val	p.A1008V	ENST00000279873	NM_032199.2	1008	gCg/gTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	490	1063	1	ENST00000171111.5:c.1249G>A	p.Gly417Arg	p.G417R	ENST00000171111	NM_203500.1	417	Ggg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	410	792	0	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748512	162748512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			768	124	602	0	ENST00000367921.3:c.2426G>T	p.Gly809Val	p.G809V	ENST00000367921	NM_006182.2	809	gGg/gTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435017	18435017	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	146	208	0	ENST00000266497.5:c.2T>C	p.Met1?	p.M1?	ENST00000266497		1	aTg/aCg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942181	17942181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	384	852	0	ENST00000458235.1:c.2834G>A	p.Cys945Tyr	p.C945Y	ENST00000458235	NM_000215.3	945	tGc/tAc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31435925	31435929	+	frameshift_variant	Frame_Shift_Del	DEL	CTAAT	CTAAT	-			P-0046827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			762	221	580	0	ENST00000344624.3:c.2985_2989del	p.Leu996AsnfsTer20	p.L996Nfs*20	ENST00000344624		995	ggATTAGca/ggca																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907071	101907071	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	117	389	0	ENST00000374994.4:c.1031A>T	p.Asn344Ile	p.N344I	ENST00000374994	NM_004612.2	344	aAt/aTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	49	635	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0047371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	49	423	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0047371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1561	485	909	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0047371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	41	331	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	155	754	0	ENST00000269305.4:c.581T>A	p.Leu194His	p.L194H	ENST00000269305	NM_001126112.2	194	cTt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	175	775	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778363	3778363	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139688311		P-0047371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	89	878	1	ENST00000262367.5:c.6685G>A	p.Gly2229Ser	p.G2229S	ENST00000262367	NM_004380.2	2229	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101238	27101239	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	92	727	0	ENST00000324856.7:c.4522dup	p.Tyr1508LeufsTer24	p.Y1508Lfs*24	ENST00000324856	NM_006015.4	1507	aat/aaTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	351	796	0	ENST00000324856.7:c.1650dupC	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099361	27099361	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	295	616	0	ENST00000324856.7:c.3598C>T	p.Gln1200Ter	p.Q1200*	ENST00000324856	NM_006015.4	1200	Cag/Tag																																																																														
STK40	83931	MSKCC	GRCh37	1	36826926	36826926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	307	641	0	ENST00000373129.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000373129	NM_032017.1	3	cGg/cAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306959	65306959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	151	473	0	ENST00000342505.4:c.2618G>A	p.Arg873His	p.R873H	ENST00000342505	NM_002227.2	873	cGc/cAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	180	405	5	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206653236	206653236	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143491598		P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	286	756	1	ENST00000367120.3:c.1207G>A	p.Val403Ile	p.V403I	ENST00000367120	NM_014002.3	403	Gtc/Atc																																																																														
IL10	3586	MSKCC	GRCh37	1	206945647	206945647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	281	564	1	ENST00000423557.1:c.134G>A	p.Arg45Gln	p.R45Q	ENST00000423557	NM_000572.2	45	cGa/cAa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852245	63852245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	335	590	3	ENST00000279873.7:c.3023C>T	p.Ala1008Val	p.A1008V	ENST00000279873	NM_032199.2	1008	gCg/gTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692961	89692961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	194	510	0	ENST00000371953.3:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000371953	NM_000314.4	149	Caa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	427	606	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572228	64572228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	159	528	0	ENST00000337652.1:c.1426T>C	p.Trp476Arg	p.W476R	ENST00000337652	NM_130803.2	476	Tgg/Cgg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202491	67202491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	410	861	1	ENST00000312629.5:c.1300C>T	p.Arg434Trp	p.R434W	ENST00000312629	NM_003952.2	434	Cgg/Tgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943359	71943359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	292	714	0	ENST00000298229.2:c.1691C>T	p.Ser564Leu	p.S564L	ENST00000298229	NM_001567.3	564	tCg/tTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	324	885	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
CBL	867	MSKCC	GRCh37	11	119156010	119156010	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	412	834	1	ENST00000264033.4:c.1675C>T	p.Arg559Ter	p.R559*	ENST00000264033	NM_005188.3	559	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	224	771	3	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445403	49445403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	419	991	0	ENST00000301067.7:c.2063G>A	p.Arg688His	p.R688H	ENST00000301067	NM_003482.3	688	cGc/cAc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562372	21562372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	130	702	0	ENST00000382592.4:c.1547C>T	p.Pro516Leu	p.P516L	ENST00000382592	NM_014572.2	516	cCg/cTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562708	21562708	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	218	427	0	ENST00000382592.4:c.1211G>C	p.Ser404Thr	p.S404T	ENST00000382592	NM_014572.2	404	aGc/aCc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434889	110434889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	325	752	0	ENST00000375856.3:c.3512G>A	p.Arg1171His	p.R1171H	ENST00000375856	NM_003749.2	1171	cGc/cAc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30105512	30105512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	336	772	0	ENST00000331968.5:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000331968	NM_002742.2	392	Gcc/Acc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465636	99465636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	233	543	0	ENST00000268035.6:c.2461G>A	p.Val821Ile	p.V821I	ENST00000268035	NM_000875.3	821	Gtc/Atc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	230	521	0	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	224	574	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
FLCN	201163	MSKCC	GRCh37	17	17124911	17124911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	315	742	0	ENST00000285071.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000285071	NM_144997.5	271	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	221	534	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805404	46805404	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1188	67	849	0	ENST00000290295.7:c.552C>A	p.Cys184Ter	p.C184*	ENST00000290295	NM_006361.5	184	tgC/tgA																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	663	857	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885955	59885955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	294	584	0	ENST00000259008.2:c.791G>A	p.Arg264Gln	p.R264Q	ENST00000259008	NM_032043.2	264	cGg/cAg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59924571	59924571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	93	309	0	ENST00000259008.2:c.518G>A	p.Arg173His	p.R173H	ENST00000259008	NM_032043.2	173	cGt/cAt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78811741	78811741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	298	682	0	ENST00000306801.3:c.1156G>A	p.Val386Ile	p.V386I	ENST00000306801	NM_020761.2	386	Gtt/Att																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274219	5274219	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	349	730	0	ENST00000357368.4:c.228G>T	p.Gln76His	p.Q76H	ENST00000357368	NM_002850.3	76	caG/caT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602347	10602347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	448	826	2	ENST00000171111.5:c.1231G>A	p.Val411Met	p.V411M	ENST00000171111	NM_203500.1	411	Gtg/Atg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11018790	11018790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	452	958	1	ENST00000327064.4:c.422C>T	p.Thr141Met	p.T141M	ENST00000327064	NM_199141.1	141	aCg/aTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132467	11132467	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	63	780	0	ENST00000344626.4:c.2683C>T	p.Gln895Ter	p.Q895*	ENST00000344626	NM_003072.3	895	Cag/Tag																																																																														
CALR	811	MSKCC	GRCh37	19	13051222	13051222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	217	638	0	ENST00000316448.5:c.658G>A	p.Asp220Asn	p.D220N	ENST00000316448	NM_004343.3	220	Gat/Aat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289907	15289907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	391	924	1	ENST00000263388.2:c.3647C>T	p.Ala1216Val	p.A1216V	ENST00000263388	NM_000435.2	1216	gCg/gTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223175	36223175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	173	955	3	ENST00000222270.7:c.5730del	p.Arg1911AspfsTer23	p.R1911Dfs*23	ENST00000222270	NM_014727.1	1909	Ccc/cc																																																																														
AXL	558	MSKCC	GRCh37	19	41765474	41765474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	291	736	0	ENST00000301178.4:c.2350C>T	p.Arg784Trp	p.R784W	ENST00000301178	NM_021913.4	784	Cgg/Tgg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796483	42796483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	395	889	0	ENST00000575354.2:c.3040G>A	p.Ala1014Thr	p.A1014T	ENST00000575354	NM_015125.3	1014	Gcg/Acg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867268	45867268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	378	772	1	ENST00000391945.4:c.925G>A	p.Val309Met	p.V309M	ENST00000391945	NM_000400.3	309	Gtg/Atg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	333	686	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25466773	25466773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	284	593	1	ENST00000264709.3:c.1930G>A	p.Ala644Thr	p.A644T	ENST00000264709	NM_175629.2	644	Gct/Act																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467482	25467482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	331	760	1	ENST00000264709.3:c.1594G>A	p.Gly532Ser	p.G532S	ENST00000264709	NM_175629.2	532	Ggc/Agc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662682	227662682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	255	782	2	ENST00000305123.5:c.773G>T	p.Arg258Leu	p.R258L	ENST00000305123	NM_005544.2	258	cGg/cTg																																																																														
NF2	4771	MSKCC	GRCh37	22	30067870	30067870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	256	588	0	ENST00000338641.4:c.1055C>T	p.Thr352Met	p.T352M	ENST00000338641	NM_000268.3	352	aCg/aTg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713702	30713702	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	46	586	0	ENST00000359013.4:c.1102A>G	p.Ser368Gly	p.S368G	ENST00000359013	NM_001024847.2	368	Agc/Ggc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267296	41267296	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	44	392	0	ENST00000349496.5:c.880T>G	p.Leu294Val	p.L294V	ENST00000349496	NM_001904.3	294	Ttg/Gtg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021728	71021728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	219	443	0	ENST00000318789.4:c.1630C>T	p.Arg544Ter	p.R544*	ENST00000318789	NM_032682.5	544	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	167	487	3	ENST00000350721.4:c.5440delA	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																														
BCL6	604	MSKCC	GRCh37	3	187442853	187442853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	189	402	0	ENST00000232014.4:c.1853G>A	p.Arg618His	p.R618H	ENST00000232014	NM_001130845.1	618	cGt/cAt																																																																														
BCL6	604	MSKCC	GRCh37	3	187444650	187444650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	234	525	0	ENST00000232014.4:c.1577G>A	p.Arg526His	p.R526H	ENST00000232014	NM_001130845.1	526	cGc/cAc																																																																														
BCL6	604	MSKCC	GRCh37	3	187447328	187447328	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	324	628	1	ENST00000232014.4:c.865C>T	p.Arg289Ter	p.R289*	ENST00000232014	NM_001130845.1	289	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541124	187541124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	233	414	1	ENST00000441802.2:c.6616G>A	p.Ala2206Thr	p.A2206T	ENST00000441802	NM_005245.3	2206	Gct/Act																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592144	67592144	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	136	270	0	ENST00000274335.5:c.1960C>T	p.Gln654Ter	p.Q654*	ENST00000274335		654	Cag/Tag																																																																														
MSH3	4437	MSKCC	GRCh37	5	79966025	79966025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	167	514	0	ENST00000265081.6:c.689C>T	p.Thr230Met	p.T230M	ENST00000265081	NM_002439.4	230	aCg/aTg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131893105	131893105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	162	316	0	ENST00000265335.6:c.89C>T	p.Pro30Leu	p.P30L	ENST00000265335		30	cCc/cTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519337	176519337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	292	667	2	ENST00000292408.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000292408	NM_213647.1	248	cGg/cAg																																																																														
IRF4	3662	MSKCC	GRCh37	6	398937	398937	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	125	590	0	ENST00000380956.4:c.745+2T>G		p.X249_splice	ENST00000380956	NM_001195286.1	249																																																																															
MDC1	9656	MSKCC	GRCh37	6	30680239	30680239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	253	859	0	ENST00000376406.3:c.1480G>A	p.Asp494Asn	p.D494N	ENST00000376406	NM_014641.2	494	Gac/Aac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631362	117631362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150262256		P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	224	497	1	ENST00000368508.3:c.6316G>A	p.Ala2106Thr	p.A2106T	ENST00000368508	NM_002944.2	2106	Gcc/Acc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150410	157150410	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs141260832		P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	279	715	0	ENST00000346085.5:c.1592T>C	p.Met531Thr	p.M531T	ENST00000346085	NM_020732.3	531	aTg/aCg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026721	6026721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	333	576	2	ENST00000265849.7:c.1675G>A	p.Gly559Arg	p.G559R	ENST00000265849	NM_000535.5	559	Gga/Aga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55229246	55229246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	312	593	0	ENST00000275493.2:c.1553C>T	p.Pro518Leu	p.P518L	ENST00000275493	NM_005228.3	518	cCg/cTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38172977	38172977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185827074		P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	300	599	0	ENST00000317025.8:c.2072C>T	p.Ser691Leu	p.S691L	ENST00000317025	NM_023034.1	691	tCg/tTg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970930	70970930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	330	784	1	ENST00000276594.2:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000276594	NM_024504.3	444	cGg/cAg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128268614	128268614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	340	795	0	ENST00000265960.3:c.1041G>T	p.Trp347Cys	p.W347C	ENST00000265960	NM_001006617.1	347	tgG/tgT																																																																														
ARAF	369	MSKCC	GRCh37	X	47424664	47424664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	347	815	0	ENST00000377045.4:c.472G>A	p.Val158Ile	p.V158I	ENST00000377045	NM_001654.4	158	Gtc/Atc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222484	53222484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	352	899	1	ENST00000375401.3:c.4348G>A	p.Ala1450Thr	p.A1450T	ENST00000375401	NM_004187.3	1450	Gct/Act																																																																														
AR	367	MSKCC	GRCh37	X	66765778	66765779	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	307	911	0	ENST00000374690.3:c.796dup	p.Asp266GlyfsTer39	p.D266Gfs*39	ENST00000374690	NM_000044.3	264	cgg/cGgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420618	49420618	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	191	646	0	ENST00000301067.7:c.15131A>T	p.Asp5044Val	p.D5044V	ENST00000301067	NM_003482.3	5044	gAt/gTt																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	43	478	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	139	454	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440713	56440713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	152	591	0	ENST00000407977.2:c.505G>A	p.Ala169Thr	p.A169T	ENST00000407977		169	Gct/Act																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0047608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	171	589	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258035	123258035	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	168	517	0	ENST00000358487.5:c.1646A>C	p.Asn549Thr	p.N549T	ENST00000358487	NM_000141.4	549	aAt/aCt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371810	55371831	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCCCCGAGGGCGGCCGCGT	TGGGCCCCGAGGGCGGCCGCGT	-			P-0047608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	58	62	0	ENST00000297316.4:c.500_521del	p.Leu167ArgfsTer213	p.L167Rfs*213	ENST00000297316	NM_022454.3	167	cTGGGCCCCGAGGGCGGCCGCGTg/cg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89335044	89335044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	47	319	0	ENST00000301030.4:c.7834G>A	p.Glu2612Lys	p.E2612K	ENST00000301030	NM_001256183.1	2612	Gag/Aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439945	56439945	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	73	577	1	ENST00000407977.2:c.647C>A	p.Ser216Ter	p.S216*	ENST00000407977		216	tCg/tAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440698	56440698	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	43	621	0	ENST00000407977.2:c.520G>T	p.Glu174Ter	p.E174*	ENST00000407977		174	Gag/Tag																																																																														
CASP8	841	MSKCC	GRCh37	2	202131478	202131478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	64	428	0	ENST00000358485.4:c.446T>C	p.Leu149Pro	p.L149P	ENST00000358485	NM_001080125.1	149	cTt/cCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948134	178948134	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	87	222	0	ENST00000263967.3:c.2906A>G	p.Gln969Arg	p.Q969R	ENST00000263967	NM_006218.2	969	cAa/cGa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100324	157100324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	26	216	0	ENST00000346085.5:c.1261C>T	p.Gln421Ter	p.Q421*	ENST00000346085	NM_020732.3	421	Cag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70339327	70339327	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0047608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	124	427	0	ENST00000374080.3:c.204+1del		p.K68fs	ENST00000374080		68	aaG/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	93	892	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56798164	56798164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	64	459	0	ENST00000337432.4:c.895C>T	p.Pro299Ser	p.P299S	ENST00000337432	NM_058216.2	299	Cct/Tct																																																																														
CDK12	51755	MSKCC	GRCh37	17	37672045	37672045	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	88	693	0	ENST00000447079.4:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000447079	NM_015083.1	944	Cag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	29451812	29451812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	55	770	0	ENST00000389048.3:c.2753G>C	p.Arg918Thr	p.R918T	ENST00000389048	NM_004304.4	918	aGa/aCa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401156	139401169	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCGGCACCCACCG	CGCGGCACCCACCG	TGT			P-0047610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	84	865	3	ENST00000277541.6:c.3900_3901+12delinsACA		p.X1300_splice	ENST00000277541	NM_017617.3	1300																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	114	359	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	331	494	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	331	494	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	331	494	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	496	729	0	ENST00000269305.4:c.799C>G	p.Arg267Gly	p.R267G	ENST00000269305	NM_001126112.2	267	Cgg/Ggg																																																																														
TET1	80312	MSKCC	GRCh37	10	70451121	70451121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	248	751	2	ENST00000373644.4:c.5961G>T	p.Leu1987Phe	p.L1987F	ENST00000373644	NM_030625.2	1987	ttG/ttT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445026	49445029	+	frameshift_variant	Frame_Shift_Del	DEL	GCGG	GCGG	-			P-0047614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	187	866	0	ENST00000301067.7:c.2437_2440del	p.Pro813ThrfsTer116	p.P813Tfs*116	ENST00000301067	NM_003482.3	813	CCGCac/ac																																																																														
UPF1	5976	MSKCC	GRCh37	19	18966751	18966752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	293	1070	0	ENST00000262803.5:c.1563dup	p.Pro522SerfsTer29	p.P522Sfs*29	ENST00000262803	NM_002911.3	521	gct/gcTt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87359903	87359903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	169	416	1	ENST00000277120.3:c.1211C>T	p.Ala404Val	p.A404V	ENST00000277120		404	gCg/gTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396314	139396314	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	622	995	2	ENST00000277541.6:c.5524C>T	p.Gln1842Ter	p.Q1842*	ENST00000277541	NM_017617.3	1842	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	223	796	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0047615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	224	641	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
IL10	3586	MSKCC	GRCh37	1	206944310	206944310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	83	770	0	ENST00000423557.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000423557	NM_000572.2	107	gCg/gTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	132	873	0	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484206	8484206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	94	655	0	ENST00000356435.5:c.3326G>A	p.Arg1109His	p.R1109H	ENST00000356435		1109	cGt/cAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274133	10274133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	88	750	0	ENST00000330684.3:c.136G>A	p.Val46Met	p.V46M	ENST00000330684	NM_001134407.1	46	Gtg/Atg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435945	56435945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	45	622	1	ENST00000407977.2:c.1192G>A	p.Ala398Thr	p.A398T	ENST00000407977		398	Gct/Act																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0029532-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			377	162	574	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029532-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			417	46	514	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029532-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			224	131	467	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
MAX	4149	MSKCC	GRCh37	14	65560493	65560493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029532-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			480	61	653	0	ENST00000358664.4:c.104G>T	p.Arg35Leu	p.R35L	ENST00000358664	NM_002382.4	35	cGt/cTt																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031999	26031999	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029532-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			585	88	479	0	ENST00000244661.2:c.290G>C	p.Cys97Ser	p.C97S	ENST00000244661	NM_003537.3	97	tGt/tCt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165688	47165688	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029532-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			359	190	649	2	ENST00000409792.3:c.438A>T	p.Lys146Asn	p.K146N	ENST00000409792	NM_014159.6	146	aaA/aaT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017736	31017746	+	protein_altering_variant	In_Frame_Del	DEL	GGCAGCCCGTC	GGCAGCCCGTC	AG			P-0029532-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			955	53	844	3	ENST00000375687.4:c.598_608delinsAG	p.Gly200_Pro202del	p.G200_P202del	ENST00000375687	NM_015338.5	200	GGCAGCCCGTCc/AGc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163711	32163712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029532-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			618	129	507	0	ENST00000375023.3:c.5514_5515insA	p.Pro1839ThrfsTer77	p.P1839Tfs*77	ENST00000375023	NM_004557.3	1838	-/A																																																																														
RHEB	6009	MSKCC	GRCh37	7	151167739	151167739	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0029532-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			296	29	253	0	ENST00000262187.5:c.381-1G>A		p.X127_splice	ENST00000262187	NM_005614.3	127																																																																															
EED	8726	MSKCC	GRCh37	11	85988182	85988182	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	41	457	1	ENST00000263360.6:c.1125+2T>C		p.X375_splice	ENST00000263360	NM_003797.3	375																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	81	552	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46254728	46254728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	67	401	0	ENST00000334344.6:c.4918A>G	p.Lys1640Glu	p.K1640E	ENST00000334344	NM_152641.2	1640	Aaa/Gaa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112580	115112581	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			978	118	1074	2	ENST00000257566.3:c.1159_1160delinsAA	p.Pro387Asn	p.P387N	ENST00000257566	NM_016569.3	387	CCc/AAc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28959073	28959073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	47	552	0	ENST00000282397.4:c.2065G>A	p.Glu689Lys	p.E689K	ENST00000282397	NM_002019.4	689	Gag/Aag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060973	38060973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	55	619	0	ENST00000250448.2:c.1016G>T	p.Gly339Val	p.G339V	ENST00000250448	NM_004496.3	339	gGg/gTg																																																																														
AKT1	207	MSKCC	GRCh37	14	105239294	105239294	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			888	55	1044	0	ENST00000349310.3:c.1093G>T	p.Glu365Ter	p.E365*	ENST00000349310	NM_001014432.1	365	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			908	144	1176	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145589	11145589	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	98	689	0	ENST00000344626.4:c.3952-1G>A		p.X1318_splice	ENST00000344626	NM_003072.3	1318																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660280	227660280	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	109	867	1	ENST00000305123.5:c.3175C>A	p.Leu1059Met	p.L1059M	ENST00000305123	NM_005544.2	1059	Ctg/Atg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098556	47098562	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGGGA	ACTGGGA	-			P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	36	646	0	ENST00000409792.3:c.6712_6718del	p.Ser2238MetfsTer8	p.S2238Mfs*8	ENST00000409792	NM_014159.6	2238	TCCCAGTat/at																																																																														
LYN	4067	MSKCC	GRCh37	8	56879391	56879391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			895	59	850	0	ENST00000519728.1:c.908T>C	p.Val303Ala	p.V303A	ENST00000519728	NM_002350.3	303	gTg/gCg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964388	70964388	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	103	572	0	ENST00000276594.2:c.1640C>A	p.Ser547Ter	p.S547*	ENST00000276594	NM_024504.3	547	tCa/tAa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039883	47039883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040655-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			937	105	1038	0	ENST00000329236.7:c.992C>A	p.Ala331Glu	p.A331E	ENST00000329236	NM_001204466.1	331	gCg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	234	514	4	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0047318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	720	855	23	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	124	436	0	ENST00000342988.3:c.1611C>A	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaA																																																																														
UPF1	5976	MSKCC	GRCh37	19	18962992	18962992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	271	1036	15	ENST00000262803.5:c.859G>A	p.Glu287Lys	p.E287K	ENST00000262803	NM_002911.3	287	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971015	21971015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	193	472	3	ENST00000304494.5:c.343G>A	p.Val115Met	p.V115M	ENST00000304494	NM_000077.4	115	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971015	21971015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	193	472	3	ENST00000304494.5:c.343G>A	p.Val115Met	p.V115M	ENST00000304494	NM_000077.4	115	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971015	21971015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	193	472	3	ENST00000304494.5:c.343G>A	p.Val115Met	p.V115M	ENST00000304494	NM_000077.4	115	Gtg/Atg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	18	168	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653841	89653841	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	31	153	0	ENST00000371953.3:c.139A>T	p.Arg47Trp	p.R47W	ENST00000371953	NM_000314.4	47	Agg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084162	47084162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	52	188	0	ENST00000409792.3:c.7127T>A	p.Leu2376Ter	p.L2376*	ENST00000409792	NM_014159.6	2376	tTg/tAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	105	445	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	123	335	0				ENST00000310581	NM_198253.2																																																																																
AKT2	208	MSKCC	GRCh37	19	40762959	40762959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	243	643	0	ENST00000392038.2:c.49G>A	p.Glu17Lys	p.E17K	ENST00000392038	NM_001626.4	17	Gaa/Aaa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89862377	89862377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	350	757	1	ENST00000389301.3:c.943C>T	p.Pro315Ser	p.P315S	ENST00000389301	NM_000135.2	315	Cct/Tct																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625468	69625468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0047321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	300	718	0	ENST00000334134.2:c.325G>C	p.Glu109Gln	p.E109Q	ENST00000334134	NM_005247.2	109	Gag/Cag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478182	99478182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	230	610	0	ENST00000268035.6:c.3086G>C	p.Arg1029Thr	p.R1029T	ENST00000268035	NM_000875.3	1029	aGa/aCa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349872	15349872	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	145	768	0	ENST00000263377.2:c.3780G>A	p.Met1260Ile	p.M1260I	ENST00000263377	NM_058243.2	1260	atG/atA																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053316	37053316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	105	369	0	ENST00000231790.2:c.551C>T	p.Ser184Leu	p.S184L	ENST00000231790	NM_000249.3	184	tCa/tTa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2110795	2110795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1800725		P-0047325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	298	985	0	ENST00000219476.3:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000219476	NM_000548.3	367	cGg/cAg																																																																														
RB1	5925	MSKCC	GRCh37	13	49033971	49033971	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0047325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	943	539	1	ENST00000267163.4:c.2106+2T>A		p.X702_splice	ENST00000267163	NM_000321.2	702																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679748	88679748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	233	788	1	ENST00000360948.2:c.715C>T	p.Pro239Ser	p.P239S	ENST00000360948	NM_001012338.2	239	Cct/Tct																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197399	26197399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	244	454	0	ENST00000356476.2:c.80G>C	p.Arg27Pro	p.R27P	ENST00000356476		27	cGa/cCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0047325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	654	669	0	ENST00000269305.4:c.783-2A>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
RET	5979	MSKCC	GRCh37	10	43612056	43612056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	289	1012	0	ENST00000355710.3:c.2161C>G	p.Arg721Gly	p.R721G	ENST00000355710	NM_020975.4	721	Cgg/Ggg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578241	28578241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1775	269	732	0	ENST00000241453.7:c.2930G>A	p.Arg977Lys	p.R977K	ENST00000241453	NM_004119.2	977	aGa/aAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872559	37872559	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	290	644	0	ENST00000269571.5:c.1519G>T	p.Glu507Ter	p.E507*	ENST00000269571		507	Gag/Tag																																																																														
PARK2	0	MSKCC	GRCh37	6	162683718	162683718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	223	824	1	ENST00000366898.1:c.251G>T	p.Gly84Val	p.G84V	ENST00000366898	NM_004562.2	84	gGa/gTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151960129	151960129	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	122	633	0	ENST00000262189.6:c.1271C>G	p.Ser424Ter	p.S424*	ENST00000262189	NM_170606.2	424	tCa/tGa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0047506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	196	834	1	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253753	153253754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	106	334	0	ENST00000281708.4:c.979_980insT	p.Glu327ValfsTer5	p.E327Vfs*5	ENST00000281708	NM_033632.3	327	gaa/gTaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44896907	44896917	+	frameshift_variant	Frame_Shift_Del	DEL	TCACATTGCCC	TCACATTGCCC	-			P-0047506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	98	534	0	ENST00000377967.4:c.627_637del	p.Phe209LeufsTer4	p.F209Lfs*4	ENST00000377967	NM_021140.2	209	ttTCACATTGCCCac/ttac																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402602	20402602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	129	584	0	ENST00000346618.3:c.139G>C	p.Ala47Pro	p.A47P	ENST00000346618	NM_001949.4	47	Gcc/Ccc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061136	38061202	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	TGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	-			P-0047509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	424	310	0	ENST00000250448.2:c.787_853del	p.Gln263AlafsTer36	p.Q263Afs*36	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAgc/gc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37649080	37649082	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0047509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	44	453	0	ENST00000447079.4:c.2188_2190del	p.Ile730del	p.I730del	ENST00000447079	NM_015083.1	729	ATT/-																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099247	4099247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	37	823	1	ENST00000262948.5:c.871C>T	p.Pro291Ser	p.P291S	ENST00000262948	NM_030662.3	291	Cct/Tct																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619352	37619354	+	frameshift_variant	Frame_Shift_Del	DEL	GTC	GTC	A			P-0047509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	60	389	1	ENST00000447079.4:c.1028_1030delinsA	p.Ser343LysfsTer7	p.S343Kfs*7	ENST00000447079	NM_015083.1	343	aGTCgg/aAgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	65	392	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	92	685	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	210	418	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
KDR	3791	MSKCC	GRCh37	4	55976873	55976873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	250	654	0	ENST00000263923.4:c.1039C>A	p.Arg347Ser	p.R347S	ENST00000263923	NM_002253.2	347	Cgt/Agt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225370818	225370818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	66	432	0	ENST00000264414.4:c.1061G>T	p.Arg354Leu	p.R354L	ENST00000264414	NM_003590.4	354	cGc/cTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470597	25470597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	237	772	0	ENST00000264709.3:c.877G>T	p.Gly293Trp	p.G293W	ENST00000264709	NM_175629.2	293	Ggg/Tgg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740163	162740163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	116	575	0	ENST00000367921.3:c.1365C>A	p.Asn455Lys	p.N455K	ENST00000367921	NM_006182.2	455	aaC/aaA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857437	9857437	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	165	619	0	ENST00000330684.3:c.3964G>T	p.Gly1322Ter	p.G1322*	ENST00000330684	NM_001134407.1	1322	Gga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857958	9857958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	515	719	0	ENST00000330684.3:c.3443C>A	p.Pro1148Gln	p.P1148Q	ENST00000330684	NM_001134407.1	1148	cCg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299832	15299832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	194	895	0	ENST00000263388.2:c.1346G>T	p.Arg449Leu	p.R449L	ENST00000263388	NM_000435.2	449	cGc/cTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156648	55156648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	230	540	0	ENST00000257290.5:c.3049G>T	p.Gly1017Cys	p.G1017C	ENST00000257290	NM_006206.4	1017	Ggc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112177495	112177495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	109	355	0	ENST00000257430.4:c.6204G>T	p.Met2068Ile	p.M2068I	ENST00000257430	NM_000038.5	2068	atG/atT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150548	157150548	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	205	547	0	ENST00000346085.5:c.1730A>T	p.Gln577Leu	p.Q577L	ENST00000346085	NM_020732.3	577	cAg/cTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030493	47030496	+	intron_variant	Intron	DEL	CCCA	CCCA	-			P-0047511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	259	846	0	ENST00000329236.7:c.201+1598_201+1601del		p.*67*	ENST00000329236	NM_001204466.1																																																																																
TP53	7157	MSKCC	GRCh37	17	7579707	7579707	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	74	771	0	ENST00000269305.4:c.89del	p.Asn30ThrfsTer14	p.N30Tfs*14	ENST00000269305	NM_001126112.2	30	aAc/ac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630804	187630804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	48	736	0	ENST00000441802.2:c.178G>A	p.Gly60Ser	p.G60S	ENST00000441802	NM_005245.3	60	Ggt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	95	528	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6042266	6042266	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	43	566	0	ENST00000265849.7:c.355G>A	p.Asp119Asn	p.D119N	ENST00000265849	NM_000535.5	119	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577059	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0047514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	288	972	0	ENST00000269305.4:c.879_880del	p.Glu294AlafsTer11	p.E294Afs*11	ENST00000269305	NM_001126112.2	293	ggGGag/ggag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404545	8404545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	50	266	0	ENST00000356435.5:c.4202C>G	p.Ala1401Gly	p.A1401G	ENST00000356435		1401	gCt/gGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974701	21974876	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	ATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGA	ATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGA	-			P-0047514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	186	560	0	ENST00000304494.5:c.-50_126del		p.*17*	ENST00000304494	NM_000077.4																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974701	21974876	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	ATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGA	ATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGA	-			P-0047514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	186	560	0	ENST00000304494.5:c.-50_126del		p.*17*	ENST00000304494	NM_000077.4																																																																																
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0012149-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			209	20	604	0	ENST00000397752.3:c.3028+2del		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88420262	88420262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012149-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			208	13	430	0	ENST00000360948.2:c.2424G>C	p.Gln808His	p.Q808H	ENST00000360948	NM_001012338.2	808	caG/caC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	122	380	19				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			762	189	647	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879854	37879854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			964	185	667	0	ENST00000269571.5:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000269571		717	Gag/Aag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256566	115256566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	44	316	0	ENST00000369535.4:c.145G>A	p.Glu49Lys	p.E49K	ENST00000369535	NM_002524.4	49	Gaa/Aaa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43730547	43730547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			665	39	429	0	ENST00000382044.4:c.3166G>A	p.Glu1056Lys	p.E1056K	ENST00000382044	NM_001141980.1	1056	Gag/Aag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43730590	43730590	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	40	386	0	ENST00000382044.4:c.3123G>C	p.Leu1041Phe	p.L1041F	ENST00000382044	NM_001141980.1	1041	ttG/ttC																																																																														
BLM	641	MSKCC	GRCh37	15	91334054	91334054	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	28	274	0	ENST00000355112.3:c.2999G>C	p.Arg1000Thr	p.R1000T	ENST00000355112	NM_000057.2	1000	aGa/aCa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2114378	2114378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			921	96	784	0	ENST00000219476.3:c.1549G>A	p.Glu517Lys	p.E517K	ENST00000219476	NM_000548.3	517	Gag/Aag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129612	2129619	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCCAGG	GTCCCAGG	-			P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	90	908	0	ENST00000219476.3:c.3339_3346del	p.Glu1113AspfsTer52	p.E1113Dfs*52	ENST00000219476	NM_000548.3	1113	gaGTCCCAGGct/gact																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59861786	59861786	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	30	225	0	ENST00000259008.2:c.1474-1G>T		p.X492_splice	ENST00000259008	NM_032043.2	492																																																																															
CEBPA	1050	MSKCC	GRCh37	19	33792752	33792752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			118	28	75	0	ENST00000498907.2:c.569C>G	p.Ser190Trp	p.S190W	ENST00000498907	NM_004364.3	190	tCg/tGg																																																																														
EP300	2033	MSKCC	GRCh37	22	41558776	41558776	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	47	292	0	ENST00000263253.7:c.3721C>G	p.Pro1241Ala	p.P1241A	ENST00000263253	NM_001429.3	1241	Cct/Gct																																																																														
KDR	3791	MSKCC	GRCh37	4	55948799	55948799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	26	263	0	ENST00000263923.4:c.3666G>T	p.Gln1222His	p.Q1222H	ENST00000263923	NM_002253.2	1222	caG/caT																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942803	44942808	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GCATGA	GCATGA	TATG			P-0034211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	65	262	0	ENST00000377967.4:c.3383_3388delinsTATG	p.Gly1128ValfsTer2	p.G1128Vfs*2	ENST00000377967	NM_021140.2	1128	gGCATGAac/gTATGac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	236	394	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	474	712	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225341	2225341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			561	146	785	1	ENST00000326181.6:c.1426C>T	p.Arg476Trp	p.R476W	ENST00000326181	NM_032271.2	476	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108121744	108121744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	266	426	0	ENST00000278616.4:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000278616	NM_000051.3	518	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942124	81942125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			643	128	575	0	ENST00000359376.3:c.1667dup	p.Lys557GlnfsTer16	p.K557Qfs*16	ENST00000359376	NM_002661.3	554	acg/acGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917673	178917673	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	77	208	0	ENST00000263967.3:c.548A>C	p.Asn183Thr	p.N183T	ENST00000263967	NM_006218.2	183	aAt/aCt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682152	37682152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	86	454	0	ENST00000447079.4:c.3343G>A	p.Glu1115Lys	p.E1115K	ENST00000447079	NM_015083.1	1115	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259130	16259130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	73	543	1	ENST00000375759.3:c.6395G>A	p.Gly2132Asp	p.G2132D	ENST00000375759	NM_015001.2	2132	gGt/gAt																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246670516	246670516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	74	411	0	ENST00000388985.4:c.4G>C	p.Glu2Gln	p.E2Q	ENST00000388985		2	Gag/Cag																																																																														
POLE	5426	MSKCC	GRCh37	12	133209306	133209306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	261	791	0	ENST00000320574.5:c.6080G>A	p.Arg2027Lys	p.R2027K	ENST00000320574	NM_006231.2	2027	aGg/aAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991596	72991596	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			761	144	706	0	ENST00000268489.5:c.2449A>G	p.Arg817Gly	p.R817G	ENST00000268489	NM_006885.3	817	Agg/Ggg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049826	16049826	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	220	315	0	ENST00000268712.3:c.946G>T	p.Glu316Ter	p.E316*	ENST00000268712	NM_006311.3	316	Gag/Tag																																																																														
KDR	3791	MSKCC	GRCh37	4	55948753	55948753	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	114	420	0	ENST00000263923.4:c.3712A>G	p.Thr1238Ala	p.T1238A	ENST00000263923	NM_002253.2	1238	Aca/Gca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539600	187539600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	74	369	0	ENST00000441802.2:c.8140G>A	p.Glu2714Lys	p.E2714K	ENST00000441802	NM_005245.3	2714	Gag/Aag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169020	32169020	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	108	824	0	ENST00000375023.3:c.4013T>A	p.Met1338Lys	p.M1338K	ENST00000375023	NM_004557.3	1338	aTg/aAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443650	49443651	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			540	101	725	0	ENST00000301067.7:c.3720_3721delinsTT	p.Met1240_Glu1241delinsIleTer	p.M1240_E1241delinsI*	ENST00000301067	NM_003482.3	1240	atGGag/atTTag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28883005	28883026	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAGTTCTTCAAAGGTTTTGA	AAAAGTTCTTCAAAGGTTTTGA	-			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	56	484	0	ENST00000282397.4:c.3674_3695del	p.Ile1225AsnfsTer24	p.I1225Nfs*24	ENST00000282397	NM_002019.4	1225	aTCAAAACCTTTGAAGAACTTTTa/aa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69009417	69009417	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	83	403	0	ENST00000288368.4:c.2534T>C	p.Phe845Ser	p.F845S	ENST00000288368	NM_024870.2	845	tTc/tCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			609	61	597	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679762	30679762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	41	567	0	ENST00000376406.3:c.1957G>C	p.Asp653His	p.D653H	ENST00000376406	NM_014641.2	653	Gac/Cac																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40371821	40371821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	30	661	1	ENST00000293328.3:c.590G>A	p.Arg197His	p.R197H	ENST00000293328	NM_012448.3	197	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	22	345	0				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49424968	49424969	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	37	596	0	ENST00000301067.7:c.13519dup	p.Ser4507LysfsTer68	p.S4507Kfs*68	ENST00000301067	NM_003482.3	4507	agc/aAgc																																																																														
APC	324	MSKCC	GRCh37	5	112178367	112178367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	21	325	0	ENST00000257430.4:c.7076C>T	p.Ser2359Leu	p.S2359L	ENST00000257430	NM_000038.5	2359	tCa/tTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679865	30679865	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	24	522	0	ENST00000376406.3:c.1854G>C	p.Glu618Asp	p.E618D	ENST00000376406	NM_014641.2	618	gaG/gaC																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679975	30679975	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	34	519	0	ENST00000376406.3:c.1744G>C	p.Glu582Gln	p.E582Q	ENST00000376406	NM_014641.2	582	Gag/Cag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679987	30679987	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	34	542	0	ENST00000376406.3:c.1732G>T	p.Glu578Ter	p.E578*	ENST00000376406	NM_014641.2	578	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	127	493	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			359	274	709	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
STK11	6794	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			201	355	795	1	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
KIT	3815	MSKCC	GRCh37	4	55602887	55602887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			236	112	362	0	ENST00000288135.5:c.2597G>A	p.Gly866Glu	p.G866E	ENST00000288135	NM_000222.2	866	gGa/gAa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602822	10602822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			279	581	1113	1	ENST00000171111.5:c.756G>T	p.Trp252Cys	p.W252C	ENST00000171111	NM_203500.1	252	tgG/tgT																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123256179	123256179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			337	164	577	0	ENST00000358487.5:c.1730G>T	p.Arg577Leu	p.R577L	ENST00000358487	NM_000141.4	577	cGa/cTa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98224270	98224270	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			144	60	335	0	ENST00000331920.6:c.2571T>A	p.Asp857Glu	p.D857E	ENST00000331920	NM_000264.3	857	gaT/gaA																																																																														
AR	367	MSKCC	GRCh37	X	66931343	66931343	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			765	174	695	1	ENST00000374690.3:c.1985T>A	p.Val662Glu	p.V662E	ENST00000374690	NM_000044.3	662	gTg/gAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134240	11134240	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			230	364	778	0	ENST00000344626.4:c.2906A>G	p.His969Arg	p.H969R	ENST00000344626	NM_003072.3	969	cAc/cGc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599260	28599260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			312	488	1101	0	ENST00000253063.3:c.706G>A	p.Glu236Lys	p.E236K	ENST00000253063	NM_031459.4	236	Gaa/Aaa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118857	115118857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			447	96	552	0	ENST00000257566.3:c.484C>T	p.Arg162Cys	p.R162C	ENST00000257566	NM_016569.3	162	Cgt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133210931	133210931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			584	199	773	0	ENST00000320574.5:c.5845G>T	p.Glu1949Ter	p.E1949*	ENST00000320574	NM_006231.2	1949	Gag/Tag																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108268	8108268	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			529	245	956	0	ENST00000585124.1:c.956C>G	p.Ala319Gly	p.A319G	ENST00000585124	NM_004217.3	319	gCc/gGc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313452	30313452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			595	188	671	0	ENST00000262643.3:c.1052G>T	p.Gly351Val	p.G351V	ENST00000262643	NM_001238.2	351	gGc/gTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223932	36223932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			771	245	1062	4	ENST00000222270.7:c.6482G>A	p.Arg2161His	p.R2161H	ENST00000222270	NM_014727.1	2161	cGc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877396	40877396	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			422	338	696	0	ENST00000373198.4:c.2300C>G	p.Ala767Gly	p.A767G	ENST00000373198	NM_133170.3	767	gCt/gGt																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130595	29130595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			379	153	727	0	ENST00000328354.6:c.115T>C	p.Ser39Pro	p.S39P	ENST00000328354	NM_007194.3	39	Tcc/Ccc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430723	181430723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			348	397	836	2	ENST00000325404.1:c.575C>T	p.Ala192Val	p.A192V	ENST00000325404	NM_003106.3	192	gCg/gTg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143029297	143029297	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			213	82	327	0	ENST00000262992.4:c.2323G>T	p.Glu775Ter	p.E775*	ENST00000262992	NM_001101669.1	775	Gaa/Taa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509440	149509440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			674	213	1036	2	ENST00000261799.4:c.1459C>A	p.Gln487Lys	p.Q487K	ENST00000261799	NM_002609.3	487	Cag/Aag																																																																														
MED12	9968	MSKCC	GRCh37	X	70341543	70341543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046824-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			496	758	937	1	ENST00000374080.3:c.978C>A	p.Ser326Arg	p.S326R	ENST00000374080		326	agC/agA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047184-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	52	334	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047184-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	156	610	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047184-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	229	542	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579582	7579583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047184-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	260	654	0	ENST00000269305.4:c.104dup	p.Leu35PhefsTer8	p.L35Ffs*8	ENST00000269305	NM_001126112.2	35	ttg/ttTg																																																																														
ATR	545	MSKCC	GRCh37	3	142183937	142183937	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047184-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			109	116	213	0	ENST00000350721.4:c.7041+2T>C		p.X2347_splice	ENST00000350721	NM_001184.3	2347																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852416	63852416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047184-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	145	575	0	ENST00000279873.7:c.3194G>T	p.Gly1065Val	p.G1065V	ENST00000279873	NM_032199.2	1065	gGa/gTa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81904455	81904455	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0047184-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			81	86	222	0	ENST00000359376.3:c.565-2A>G		p.X189_splice	ENST00000359376	NM_002661.3	189																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098599	11098599	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0047184-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	145	722	0	ENST00000344626.4:c.1117A>T	p.Arg373Trp	p.R373W	ENST00000344626	NM_003072.3	373	Agg/Tgg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522186	157522186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047184-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			103	120	610	0	ENST00000346085.5:c.4459del	p.Ala1487ArgfsTer7	p.A1487Rfs*7	ENST00000346085	NM_020732.3	1486	caG/ca																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370837	55370837	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047184-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	54	834	0	ENST00000297316.4:c.139G>T	p.Glu47Ter	p.E47*	ENST00000297316	NM_022454.3	47	Gag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992821	68992821	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0047184-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	43	353	0	ENST00000288368.4:c.1785+1G>T		p.X595_splice	ENST00000288368	NM_024870.2	595																																																																															
RET	5979	MSKCC	GRCh37	10	43615036	43615036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	92	905	2	ENST00000355710.3:c.2450G>A	p.Arg817His	p.R817H	ENST00000355710	NM_020975.4	817	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	101	396	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89846310	89846310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	38	682	2	ENST00000389301.3:c.1682C>T	p.Thr561Met	p.T561M	ENST00000389301	NM_000135.2	561	aCg/aTg																																																																														
REL	5966	MSKCC	GRCh37	2	61128198	61128198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	36	221	0	ENST00000295025.8:c.374C>T	p.Ala125Val	p.A125V	ENST00000295025	NM_002908.2	125	gCa/gTa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044506	128044506	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	72	668	0	ENST00000285398.2:c.1115A>T	p.Glu372Val	p.E372V	ENST00000285398	NM_000122.1	372	gAg/gTg																																																																														
CASP8	841	MSKCC	GRCh37	2	202136292	202136292	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	87	499	0	ENST00000358485.4:c.536T>C	p.Phe179Ser	p.F179S	ENST00000358485	NM_001080125.1	179	tTt/tCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	55	491	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430227	181430227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	11	489	0	ENST00000325404.1:c.79G>A	p.Ala27Thr	p.A27T	ENST00000325404	NM_003106.3	27	Gcg/Acg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	48	227	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	62	328	0	ENST00000288602.6:c.1786G>T	p.Gly596Cys	p.G596C	ENST00000288602	NM_004333.4	596	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112137009	112137011	+	frameshift_variant	Frame_Shift_Del	DEL	CAT	CAT	G			P-0047284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	96	407	0	ENST00000257430.4:c.763_765delinsG	p.His255GlyfsTer3	p.H255Gfs*3	ENST00000257430	NM_000038.5	255	CAT/G																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	68	291	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	229	679	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	175	363	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149457716	149457716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	205	636	1	ENST00000286301.3:c.688G>A	p.Asp230Asn	p.D230N	ENST00000286301	NM_005211.3	230	Gat/Aat																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437766	52437766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	134	729	0	ENST00000460680.1:c.1395C>G	p.Ile465Met	p.I465M	ENST00000460680	NM_004656.3	465	atC/atG																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	162	244	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944562	40944562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	230	451	1	ENST00000373198.4:c.1940C>T	p.Ser647Leu	p.S647L	ENST00000373198	NM_133170.3	647	tCg/tTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5066739	5066739	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	93	318	0	ENST00000381652.3:c.1276C>T	p.Arg426Ter	p.R426*	ENST00000381652	NM_004972.3	426	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307520	118307520	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	71	549	0	ENST00000534358.1:c.293C>A	p.Ser98Ter	p.S98*	ENST00000534358	NM_005933.3	98	tCa/tAa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272363	15272363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	205	844	0	ENST00000263388.2:c.6076C>G	p.Gln2026Glu	p.Q2026E	ENST00000263388	NM_000435.2	2026	Caa/Gaa																																																																														
AKT2	208	MSKCC	GRCh37	19	40742259	40742259	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	182	671	0	ENST00000392038.2:c.865A>G	p.Ile289Val	p.I289V	ENST00000392038	NM_001626.4	289	Atc/Gtc																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96920683	96920683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	145	423	0	ENST00000258439.3:c.297C>G	p.Phe99Leu	p.F99L	ENST00000258439	NM_001193304.2	99	ttC/ttG																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437298	52437299	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	161	631	0	ENST00000460680.1:c.1745_1746delinsTT	p.Ser582Phe	p.S582F	ENST00000460680	NM_004656.3	582	tCC/tTT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230889	66230889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	58	319	0	ENST00000273854.3:c.2082G>C	p.Leu694Phe	p.L694F	ENST00000273854	NM_004439.5	694	ttG/ttC																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207546	29207546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	93	723	1	ENST00000240100.2:c.250G>A	p.Glu84Lys	p.E84K	ENST00000240100	NM_001394.6	84	Gag/Aag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225109	53225109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	202	280	0	ENST00000375401.3:c.3109G>A	p.Asp1037Asn	p.D1037N	ENST00000375401	NM_004187.3	1037	Gat/Aat																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572604	64572604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	293	794	1	ENST00000337652.1:c.1267G>T	p.Asp423Tyr	p.D423Y	ENST00000337652	NM_130803.2	423	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	187	793	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	66	412	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0047377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	61	452	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
ERG	2078	MSKCC	GRCh37	21	39795388	39795388	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	74	842	0	ENST00000288319.7:c.332A>T	p.Lys111Met	p.K111M	ENST00000288319	NM_182918.3	111	aAg/aTg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740698	58740698	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	139	567	0	ENST00000305921.3:c.1606del	p.Arg536GlyfsTer3	p.R536Gfs*3	ENST00000305921	NM_003620.3	535	Aaa/aa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183872	10183872	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0047381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	169	574	0	ENST00000256474.2:c.340+1G>T		p.X114_splice	ENST00000256474	NM_000551.3	114																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442591	52442595	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTG	ATTTG	-			P-0047381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	66	440	0	ENST00000460680.1:c.150_154del	p.Phe50LeufsTer17	p.F50Lfs*17	ENST00000460680	NM_004656.3	50	ttCAAATgg/ttgg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966584	36966584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	228	781	1	ENST00000358127.4:c.742G>A	p.Asp248Asn	p.D248N	ENST00000358127	NM_001280556.1	248	Gac/Aac																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557630	95557630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	150	611	0	ENST00000343455.3:c.5437G>A	p.Glu1813Lys	p.E1813K	ENST00000343455	NM_177438.2	1813	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	114	533	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685269	89685269	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	30	173	0	ENST00000371953.3:c.165-1G>T		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106064	27106064	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	161	819	0	ENST00000324856.7:c.5675del	p.Thr1892LysfsTer31	p.T1892Kfs*31	ENST00000324856	NM_006015.4	1892	aCa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692778	89692778	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	97	438	0	ENST00000371953.3:c.262del	p.Tyr88IlefsTer11	p.Y88Ifs*11	ENST00000371953	NM_000314.4	88	Tat/at																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571513	95571513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	158	657	0	ENST00000343455.3:c.3164C>T	p.Pro1055Leu	p.P1055L	ENST00000343455	NM_177438.2	1055	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821638	72821638	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	32	137	0	ENST00000268489.5:c.10537del	p.Ser3513ValfsTer32	p.S3513Vfs*32	ENST00000268489	NM_006885.3	3513	Agt/gt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	21	598	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0047384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	86	675	2	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	56	493	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																														
ATM	472	MSKCC	GRCh37	11	108204681	108204681	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	36	238	0	ENST00000278616.4:c.7996A>G	p.Thr2666Ala	p.T2666A	ENST00000278616	NM_000051.3	2666	Act/Gct																																																																														
CIC	23152	MSKCC	GRCh37	19	42793043	42793043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	124	792	0	ENST00000575354.2:c.935C>A	p.Ser312Tyr	p.S312Y	ENST00000575354	NM_015125.3	312	tCc/tAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	123	351	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0047388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	382	676	1	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670391	88670391	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	103	484	0	ENST00000360948.2:c.1293+2T>C		p.X431_splice	ENST00000360948	NM_001012338.2	431																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10259657	10259657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	184	601	1	ENST00000340748.4:c.2575G>A	p.Asp859Asn	p.D859N	ENST00000340748		859	Gac/Aac																																																																														
EP300	2033	MSKCC	GRCh37	22	41558754	41558756	+	missense_variant	Missense_Mutation	ONP	GAG	GAG	TAA			P-0047388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	87	450	1	ENST00000263253.7:c.3699_3701delinsTAA	p.Lys1233_Arg1234delinsAsnLys	p.K1233_R1234delinsNK	ENST00000263253	NM_001429.3	1233	aaGAGa/aaTAAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41558764	41558766	+	stop_gained	Nonsense_Mutation	ONP	GAC	GAC	TAA			P-0047388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	86	467	0	ENST00000263253.7:c.3709_3711delinsTAA	p.Asp1237Ter	p.D1237*	ENST00000263253	NM_001429.3	1237	GAC/TAA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435071	18435071	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	30	424	0	ENST00000266497.5:c.56A>G	p.Tyr19Cys	p.Y19C	ENST00000266497		19	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579316	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGTCA	CAAGTCA	-			P-0047390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	61	753	0	ENST00000269305.4:c.365_371del	p.Val122AlafsTer46	p.V122Afs*46	ENST00000269305	NM_001126112.2	122	gTGACTTGc/gc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246271	41246271	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0047390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	47	710	0	ENST00000357654.3:c.1277C>G	p.Ser426Ter	p.S426*	ENST00000357654	NM_007294.3	426	tCa/tGa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018165	48018165	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	65	855	0	ENST00000234420.5:c.361del	p.Arg121AlafsTer28	p.R121Afs*28	ENST00000234420	NM_000179.2	120	atC/at																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	83	454	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	42	319	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37881129	37881129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	150	833	0	ENST00000269571.5:c.2458C>G	p.Gln820Glu	p.Q820E	ENST00000269571		820	Cag/Gag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	155	652	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	421	930	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	201	361	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	74	381	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	293	505	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31394052	31394052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	135	574	2	ENST00000328111.2:c.2339C>T	p.Ser780Leu	p.S780L	ENST00000328111	NM_006892.3	780	tCg/tTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639237	3639237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1236	479	1196	0	ENST00000294008.3:c.4402C>T	p.Arg1468Cys	p.R1468C	ENST00000294008	NM_032444.2	1468	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	106	468	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	105	317	0				ENST00000310581	NM_198253.2																																																																																
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	102	514	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	73	375	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
HGF	3082	MSKCC	GRCh37	7	81392143	81392143	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	66	337	0	ENST00000222390.5:c.134C>A	p.Ser45Ter	p.S45*	ENST00000222390	NM_000601.4	45	tCa/tAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912198	114912198	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	187	635	0	ENST00000543371.1:c.1268A>G	p.Tyr423Cys	p.Y423C	ENST00000543371	NM_001198531.1	423	tAt/tGt																																																																														
ATM	472	MSKCC	GRCh37	11	108122691	108122691	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	100	468	0	ENST00000278616.4:c.1735T>C	p.Trp579Arg	p.W579R	ENST00000278616	NM_000051.3	579	Tgg/Cgg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39623766	39623767	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	115	465	0	ENST00000262039.4:c.2174dup	p.Tyr725Ter	p.Y725*	ENST00000262039	NM_002647.2	725	tac/tAac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589881	212589881	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	144	651	0	ENST00000342788.4:c.661T>A	p.Cys221Ser	p.C221S	ENST00000342788	NM_005235.2	221	Tgc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112137018	112137018	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	102	493	0	ENST00000257430.4:c.772del	p.Glu258SerfsTer35	p.E258Sfs*35	ENST00000257430	NM_000038.5	258	Gag/ag																																																																														
APC	324	MSKCC	GRCh37	5	112173510	112173510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	82	403	0	ENST00000257430.4:c.2219C>T	p.Ala740Val	p.A740V	ENST00000257430	NM_000038.5	740	gCc/gTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268105	55268105	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	190	858	0	ENST00000275493.2:c.2945A>G	p.Gln982Arg	p.Q982R	ENST00000275493	NM_005228.3	982	cAg/cGg																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22008928	22008928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	185	671	1	ENST00000276925.6:c.25C>T	p.Pro9Ser	p.P9S	ENST00000276925	NM_004936.3	9	Ccc/Tcc																																																																														
AR	367	MSKCC	GRCh37	X	66941715	66941715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	177	757	0	ENST00000374690.3:c.2359C>T	p.Arg787Ter	p.R787*	ENST00000374690	NM_000044.3	787	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	72	278	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043377	180043377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	175	639	4	ENST00000261937.6:c.3209G>A	p.Arg1070His	p.R1070H	ENST00000261937	NM_182925.4	1070	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	158	607	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274568	198274568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	167	595	0	ENST00000335508.6:c.830C>T	p.Ala277Val	p.A277V	ENST00000335508	NM_012433.2	277	gCg/gTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920450	114920450	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	129	547	0	ENST00000543371.1:c.1391G>A	p.Arg464Lys	p.R464K	ENST00000543371	NM_001198531.1	464	aGg/aAg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456366	32456366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	176	714	0	ENST00000332351.3:c.526C>T	p.Arg176Cys	p.R176C	ENST00000332351	NM_024426.4	176	Cgc/Tgc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267295	41267295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	88	379	1	ENST00000349496.5:c.879C>A	p.Phe293Leu	p.F293L	ENST00000349496	NM_001904.3	293	ttC/ttA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0047396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	101	550	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	35	457	1	ENST00000288602.6:c.1780G>T	p.Asp594Tyr	p.D594Y	ENST00000288602	NM_004333.4	594	Gat/Tat																																																																														
ATM	472	MSKCC	GRCh37	11	108200990	108200990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	56	514	0	ENST00000278616.4:c.7357C>T	p.Arg2453Cys	p.R2453C	ENST00000278616	NM_000051.3	2453	Cgt/Tgt																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871617	35871617	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	138	398	1	ENST00000216797.5:c.889G>T	p.Glu297Ter	p.E297*	ENST00000216797	NM_020529.2	297	Gag/Tag																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66525014	66525014	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	75	329	0	ENST00000358598.2:c.773C>G	p.Ser258Cys	p.S258C	ENST00000358598	NM_212471.2	258	tCt/tGt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602584	10602585	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0047396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	198	863	3	ENST00000171111.5:c.993_994delinsTT	p.Gly332Cys	p.G332C	ENST00000171111	NM_203500.1	331	gcGGgc/gcTTgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463247	25463248	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0047396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	78	736	3	ENST00000264709.3:c.2245_2246delinsTT	p.Arg749Phe	p.R749F	ENST00000264709	NM_175629.2	749	CGc/TTc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437823	52437832	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGATGGTG	GTTGATGGTG	-			P-0047396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	188	940	0	ENST00000460680.1:c.1329_1338del	p.Asn443LysfsTer125	p.N443Kfs*125	ENST00000460680	NM_004656.3	443	aaCACCATCAAC/aa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412623	63412630	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTCCGG	TCTTCCGG	-			P-0047396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	119	768	0	ENST00000330258.3:c.537_544del	p.His179GlnfsTer7	p.H179Qfs*7	ENST00000330258	NM_152424.3	179	caCCGGAAGAgc/cagc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741949	17741949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	85	282	0	ENST00000250003.3:c.620C>T	p.Ser207Phe	p.S207F	ENST00000250003	NM_002478.4	207	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432310	49432310	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	227	828	1	ENST00000301067.7:c.8829del	p.Asn2943LysfsTer61	p.N2943Kfs*61	ENST00000301067	NM_003482.3	2943	aaC/aa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862752	9862752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	131	519	0	ENST00000330684.3:c.2551G>T	p.Gly851Cys	p.G851C	ENST00000330684	NM_001134407.1	851	Ggc/Tgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098480	11098480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	134	524	0	ENST00000344626.4:c.998C>T	p.Pro333Leu	p.P333L	ENST00000344626	NM_003072.3	333	cCc/cTc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713931	30713931	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0047419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	76	367	0	ENST00000359013.4:c.1329+2T>G		p.X443_splice	ENST00000359013	NM_001024847.2	443																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673400	30673400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	48	645	0	ENST00000376406.3:c.3560C>T	p.Thr1187Ile	p.T1187I	ENST00000376406	NM_014641.2	1187	aCt/aTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70352312	70352312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	183	630	1	ENST00000374080.3:c.4339G>T	p.Ala1447Ser	p.A1447S	ENST00000374080		1447	Gct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	372	601	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246344	46246344	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	171	299	0	ENST00000334344.6:c.4438G>T	p.Gly1480Ter	p.G1480*	ENST00000334344	NM_152641.2	1480	Gga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691936	30691938	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0047422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	208	287	0	ENST00000359013.4:c.517_519del	p.Ile173del	p.I173del	ENST00000359013	NM_001024847.2	171	aaCATc/aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	62	345	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	15	303	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	161	654	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	184	704	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	143	642	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	143	642	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099479	27099479	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	48	320	0	ENST00000324856.7:c.3715+1G>A		p.X1239_splice	ENST00000324856	NM_006015.4	1239																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	36	296	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	143	642	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
FANCA	2175	MSKCC	GRCh37	16	89816306	89816306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	51	402	0	ENST00000389301.3:c.3071T>C	p.Met1024Thr	p.M1024T	ENST00000389301	NM_000135.2	1024	aTg/aCg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217080	2217080	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	68	667	0	ENST00000398665.3:c.2535del	p.Ser845ArgfsTer6	p.S845Rfs*6	ENST00000398665	NM_032482.2	845	agC/ag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024254	31024254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	34	498	0	ENST00000375687.4:c.3739C>G	p.Arg1247Gly	p.R1247G	ENST00000375687	NM_015338.5	1247	Cgt/Ggt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	88	549	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739743	145739743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	11	624	0	ENST00000428558.2:c.1708C>T	p.Arg570Trp	p.R570W	ENST00000428558	NM_004260.3	570	Cgg/Tgg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056424	26056424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	38	261	0	ENST00000343677.2:c.233G>A	p.Ser78Asn	p.S78N	ENST00000343677	NM_005319.3	78	aGc/aAc																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140341	50140341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	10	497	2	ENST00000246792.3:c.200C>T	p.Thr67Met	p.T67M	ENST00000246792	NM_006270.3	67	aCg/aTg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36840580	36840580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146173797		P-0047432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	38	750	0	ENST00000358127.4:c.1153G>A	p.Ala385Thr	p.A385T	ENST00000358127	NM_001280556.1	385	Gcc/Acc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258723	115258723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	143	197	1	ENST00000369535.4:c.59C>T	p.Thr20Ile	p.T20I	ENST00000369535	NM_002524.4	20	aCa/aTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46205270	46205270	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	160	256	0	ENST00000334344.6:c.356del	p.Lys119SerfsTer96	p.K119Sfs*96	ENST00000334344	NM_152641.2	118	ccA/cc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281739	46281739	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	202	424	0	ENST00000371998.3:c.4187del	p.Asn1396MetfsTer10	p.N1396Mfs*10	ENST00000371998		1396	Aat/at																																																																														
VHL	7428	MSKCC	GRCh37	3	10183792	10183805	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGCTCAACTTCG	ATGGCTCAACTTCG	-			P-0047434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	220	547	0	ENST00000256474.2:c.262_275del	p.Trp88ArgfsTer39	p.W88Rfs*39	ENST00000256474	NM_000551.3	87	gtATGGCTCAACTTCGac/gtac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247562	53247562	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	148	141	0	ENST00000375401.3:c.247del	p.Leu83Ter	p.L83*	ENST00000375401	NM_004187.3	83	Ctg/tg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627664	37627664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	84	541	0	ENST00000447079.4:c.1580del	p.Pro527HisfsTer83	p.P527Hfs*83	ENST00000447079	NM_015083.1	527	Cca/ca																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139938	50139938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	205	773	0	ENST00000246792.3:c.391G>T	p.Asp131Tyr	p.D131Y	ENST00000246792	NM_006270.3	131	Gac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112177280	112177280	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	16	274	0	ENST00000257430.4:c.5989G>T	p.Gly1997Ter	p.G1997*	ENST00000257430	NM_000038.5	1997	Gga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	74	398	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	67	655	1	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963988	2963988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	131	627	0	ENST00000396946.4:c.1819G>A	p.Glu607Lys	p.E607K	ENST00000396946	NM_032415.4	607	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101309	27101309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	68	802	0	ENST00000324856.7:c.4591G>A	p.Glu1531Lys	p.E1531K	ENST00000324856	NM_006015.4	1531	Gaa/Aaa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983129	201983129	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	140	559	2	ENST00000359651.3:c.978C>A	p.Tyr326Ter	p.Y326*	ENST00000359651		326	taC/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577511	7577527	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGTGATGATGGTGAG	AGTGTGATGATGGTGAG	-			P-0047438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	76	620	0	ENST00000269305.4:c.754_770del	p.Leu252GlyfsTer6	p.L252Gfs*6	ENST00000269305	NM_001126112.2	252	CTCACCATCATCACACTg/g																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136998	11136998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	74	701	0	ENST00000344626.4:c.3191G>A	p.Gly1064Glu	p.G1064E	ENST00000344626	NM_003072.3	1064	gGg/gAg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719184	61719184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	20	280	0	ENST00000401558.2:c.1873C>T	p.Leu625Phe	p.L625F	ENST00000401558	NM_003400.3	625	Ctt/Ttt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727101	40727101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	39	571	0	ENST00000373198.4:c.3863G>A	p.Cys1288Tyr	p.C1288Y	ENST00000373198	NM_133170.3	1288	tGc/tAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448542	89448542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	69	391	0	ENST00000336596.2:c.1506C>A	p.Asp502Glu	p.D502E	ENST00000336596	NM_005233.5	502	gaC/gaA																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041442	47041442	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	109	314	1	ENST00000329236.7:c.1551+1G>A		p.X517_splice	ENST00000329236	NM_001204466.1	517																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	851	911	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1279521	1279521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1786	936	889	1	ENST00000310581.5:c.2015G>A	p.Arg672His	p.R672H	ENST00000310581	NM_198253.2	672	cGc/cAc																																																																														
ATM	472	MSKCC	GRCh37	11	108196207	108196207	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	386	411	0	ENST00000278616.4:c.6743A>T	p.Lys2248Met	p.K2248M	ENST00000278616	NM_000051.3	2248	aAg/aTg																																																																														
RB1	5925	MSKCC	GRCh37	13	49027169	49027169	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	278	341	0	ENST00000267163.4:c.1736del	p.Arg579GlnfsTer32	p.R579Qfs*32	ENST00000267163	NM_000321.2	579	cGa/ca																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78858901	78858901	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	818	775	0	ENST00000306801.3:c.1936A>G	p.Met646Val	p.M646V	ENST00000306801	NM_020761.2	646	Atg/Gtg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021092	31021092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	442	416	0	ENST00000375687.4:c.1091G>T	p.Gly364Val	p.G364V	ENST00000375687	NM_015338.5	364	gGt/gTt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180036987	180036987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	618	676	1	ENST00000261937.6:c.3725G>T	p.Arg1242Ile	p.R1242I	ENST00000261937	NM_182925.4	1242	aGa/aTa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933967	39933967	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	696	331	0	ENST00000378444.4:c.632A>G	p.Asn211Ser	p.N211S	ENST00000378444	NM_001123385.1	211	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0047444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	124	210	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0047444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	217	489	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0047444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	135	282	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210482	5210482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs147647579		P-0047444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	160	429	0	ENST00000357368.4:c.5485C>T	p.Arg1829Trp	p.R1829W	ENST00000357368	NM_002850.3	1829	Cgg/Tgg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351208	89351208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	292	625	0	ENST00000301030.4:c.1742C>G	p.Ser581Cys	p.S581C	ENST00000301030	NM_001256183.1	581	tCt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099864	27099864	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	213	513	0	ENST00000324856.7:c.3743C>G	p.Ser1248Ter	p.S1248*	ENST00000324856	NM_006015.4	1248	tCa/tGa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475083	40475085	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0047444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	230	564	0	ENST00000264657.5:c.1825_1827del	p.Arg609del	p.R609del	ENST00000264657	NM_139276.2	609	AGA/-																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231869	36231870	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	195	385	0	ENST00000300305.3:c.514dup	p.Ser172LysfsTer41	p.S172Kfs*41	ENST00000300305		172	agc/aAgc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152857994	152857994	+	synonymous_variant	Silent	SNP	G	G	A	rs139186601		P-0047444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	94	302	0	ENST00000406277.2:c.621C>T	p.Ala207=	p.A207=	ENST00000406277	NM_152274.4	207	gcC/gcT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0047445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	11	290	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	648	476	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138453531	138453531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	166	269	0	ENST00000289153.2:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000289153	NM_006219.2	306	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484206	8484206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	172	409	0	ENST00000356435.5:c.3326G>A	p.Arg1109His	p.R1109H	ENST00000356435		1109	cGt/cAt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729259	41729259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	251	321	0	ENST00000242208.4:c.1270G>T	p.Gly424Trp	p.G424W	ENST00000242208	NM_002192.2	424	Ggg/Tgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70450876	70450876	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	215	466	0	ENST00000373644.4:c.5716G>T	p.Glu1906Ter	p.E1906*	ENST00000373644	NM_030625.2	1906	Gaa/Taa																																																																														
YAP1	10413	MSKCC	GRCh37	11	102100600	102100600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	169	334	0	ENST00000282441.5:c.1444A>G	p.Ile482Val	p.I482V	ENST00000282441	NM_001130145.2	482	Atc/Gtc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3645673	3645673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	534	672	0	ENST00000294008.3:c.1946G>T	p.Gly649Val	p.G649V	ENST00000294008	NM_032444.2	649	gGc/gTc																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309634	30309634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	610	540	0	ENST00000307677.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000307677	NM_138578.1	130	Ctc/Ttc																																																																														
KIT	3815	MSKCC	GRCh37	4	55564449	55564449	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2806	203	297	0	ENST00000288135.5:c.338-1G>T		p.X113_splice	ENST00000288135	NM_000222.2	113																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411396	63411396	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	276	366	0	ENST00000330258.3:c.1771A>G	p.Arg591Gly	p.R591G	ENST00000330258	NM_152424.3	591	Agg/Ggg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	26	297	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	31	583	0	ENST00000269305.4:c.102dupC	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101611	27101612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	49	706	0	ENST00000324856.7:c.4899dupC	p.Met1634HisfsTer14	p.M1634Hfs*14	ENST00000324856	NM_006015.4	1631	-/C																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391803	139391803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	15	749	0	ENST00000277541.6:c.6388G>A	p.Gly2130Arg	p.G2130R	ENST00000277541	NM_017617.3	2130	Ggg/Agg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713519	30713519	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	22	392	0	ENST00000359013.4:c.919G>T	p.Glu307Ter	p.E307*	ENST00000359013	NM_001024847.2	307	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	354	796	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786038	135786038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1280	113	750	1	ENST00000298552.3:c.1183C>T	p.Pro395Ser	p.P395S	ENST00000298552	NM_001162426.1	395	Cct/Tct																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786446	135786446	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	70	502	0	ENST00000298552.3:c.1084C>G	p.Pro362Ala	p.P362A	ENST00000298552	NM_001162426.1	362	Cct/Gct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	601	373	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	318	706	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	179	453	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	281	564	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	281	564	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	281	564	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1293875	1293875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1737	335	1039	0	ENST00000310581.5:c.1126C>T	p.Pro376Ser	p.P376S	ENST00000310581	NM_198253.2	376	Ccc/Tcc																																																																														
SETD8	0	MSKCC	GRCh37	12	123874031	123874031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	10	29	0	ENST00000330479.4:c.62C>T	p.Ala21Val	p.A21V	ENST00000330479	NM_020382.3	21	gCg/gTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42042214	42042214	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	167	401	0	ENST00000219905.7:c.6409G>T	p.Glu2137Ter	p.E2137*	ENST00000219905	NM_001164273.1	2137	Gaa/Taa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46254583	46254583	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	318	349	0	ENST00000334344.6:c.4774-1G>T		p.X1592_splice	ENST00000334344	NM_152641.2	1592																																																																															
RNF43	54894	MSKCC	GRCh37	17	56436101	56436101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	499	660	0	ENST00000407977.2:c.1036C>T	p.Pro346Ser	p.P346S	ENST00000407977		346	Ccc/Tcc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18974986	18974986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	169	500	0	ENST00000262803.5:c.2783G>T	p.Arg928Leu	p.R928L	ENST00000262803	NM_002911.3	928	cGc/cTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867374	45867374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	1205	854	0	ENST00000391945.4:c.819C>G	p.Ile273Met	p.I273M	ENST00000391945	NM_000400.3	273	atC/atG																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045504	47045504	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	265	322	0	ENST00000329236.7:c.2237A>T	p.Lys746Met	p.K746M	ENST00000329236	NM_001204466.1	746	aAg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	63	220	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																														
B2M	567	MSKCC	GRCh37	15	45003749	45003749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	73	505	0	ENST00000558401.1:c.5C>T	p.Ser2Phe	p.S2F	ENST00000558401	NM_004048.2	2	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578393	7578395	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0047452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	76	731	0	ENST00000269305.4:c.535_537del	p.His179del	p.H179del	ENST00000269305	NM_001126112.2	179	CAT/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577508	7577510	+	frameshift_variant	Frame_Shift_Del	DEL	TCC	TCC	GG			P-0047452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	147	601	0	ENST00000269305.4:c.771_773delinsCC	p.Glu258GlnfsTer87	p.E258Qfs*87	ENST00000269305	NM_001126112.2	257	ctGGAa/ctCCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	88	303	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125006	46125013	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAAGAA	GAGAAGAA	-			P-0047455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	43	210	0	ENST00000334344.6:c.193_200del	p.Glu65SerfsTer7	p.E65Sfs*7	ENST00000334344	NM_152641.2	65	GAGAAGAAt/t																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467669	50467669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	328	507	0	ENST00000331340.3:c.904G>A	p.Glu302Lys	p.E302K	ENST00000331340	NM_006060.4	302	Gag/Aag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164832	47164832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	335	295	0	ENST00000409792.3:c.1294C>T	p.Arg432Cys	p.R432C	ENST00000409792	NM_014159.6	432	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101358	27101358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	585	816	0	ENST00000324856.7:c.4640C>T	p.Ser1547Phe	p.S1547F	ENST00000324856	NM_006015.4	1547	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274104	10274104	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	316	811	0	ENST00000330684.3:c.165G>A	p.Trp55Ter	p.W55*	ENST00000330684	NM_001134407.1	55	tgG/tgA																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244942	123244942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	244	633	1	ENST00000358487.5:c.2162G>A	p.Arg721Lys	p.R721K	ENST00000358487	NM_000141.4	721	aGa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295230	+	upstream_gene_variant	5'Flank	ONP	GGG	GGG	AGA			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	411	334	0				ENST00000310581	NM_198253.2																																																																																
CBL	867	MSKCC	GRCh37	11	119148874	119148874	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	215	222	0	ENST00000264033.4:c.1096-2A>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934623	9934623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	191	428	0	ENST00000330684.3:c.1532C>T	p.Ser511Leu	p.S511L	ENST00000330684	NM_001134407.1	511	tCg/tTg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111516	8111517	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	192	551	2	ENST00000346208.3:c.1002_1003delinsAA	p.Asp335Asn	p.D335N	ENST00000346208		334	ggGGac/ggAAac																																																																														
TET1	80312	MSKCC	GRCh37	10	70333131	70333131	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	260	598	0	ENST00000373644.4:c.1036C>T	p.Gln346Ter	p.Q346*	ENST00000373644	NM_030625.2	346	Caa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108155087	108155087	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	376	409	0	ENST00000278616.4:c.3880A>T	p.Ile1294Phe	p.I1294F	ENST00000278616	NM_000051.3	1294	Att/Ttt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57857528	57857528	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	602	710	0	ENST00000228682.2:c.54T>A	p.Cys18Ter	p.C18*	ENST00000228682	NM_005269.2	18	tgT/tgA																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434110	121434110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	497	706	0	ENST00000257555.6:c.1001C>T	p.Pro334Leu	p.P334L	ENST00000257555		334	cCc/cTc																																																																														
BLM	641	MSKCC	GRCh37	15	91295112	91295112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	404	297	0	ENST00000355112.3:c.895G>A	p.Asp299Asn	p.D299N	ENST00000355112	NM_000057.2	299	Gat/Aat																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81891889	81891889	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	347	435	0	ENST00000359376.3:c.359T>A	p.Val120Asp	p.V120D	ENST00000359376	NM_002661.3	120	gTt/gAt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838130	89838130	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	351	576	1	ENST00000389301.3:c.2107C>T	p.Gln703Ter	p.Q703*	ENST00000389301	NM_000135.2	703	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29554544	29554545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGAAGA			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	165	201	0	ENST00000358273.4:c.2330_2336dup	p.Asp779GlufsTer17	p.D779Efs*17	ENST00000358273	NM_001042492.2	777	tgg/tGGGAAGAgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29556849	29556853	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAGG	TTAGG	-			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	246	260	0	ENST00000358273.4:c.2851-2_2853del		p.X951_splice	ENST00000358273	NM_001042492.2	951																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30320342	30320342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	200	244	0	ENST00000322652.5:c.1283T>C	p.Ile428Thr	p.I428T	ENST00000322652	NM_015355.2	428	aTa/aCa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885893	59885893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	499	470	0	ENST00000259008.2:c.853C>T	p.His285Tyr	p.H285Y	ENST00000259008	NM_032043.2	285	Cat/Tat																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216602	2216603	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	656	1019	0	ENST00000398665.3:c.2246_2247delinsTT	p.Pro749Leu	p.P749L	ENST00000398665	NM_032482.2	749	cCC/cTT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211208	36211208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	732	980	1	ENST00000222270.7:c.959C>T	p.Ser320Phe	p.S320F	ENST00000222270	NM_014727.1	320	tCc/tTc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966544	25966544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	452	636	0	ENST00000435504.4:c.2662A>G	p.Thr888Ala	p.T888A	ENST00000435504		888	Aca/Gca																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391240	89391240	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	245	279	1	ENST00000336596.2:c.1306G>A	p.Ala436Thr	p.A436T	ENST00000336596	NM_005233.5	436	Gct/Act																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467487	66467487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	258	323	1	ENST00000273854.3:c.782C>T	p.Ser261Phe	p.S261F	ENST00000273854	NM_004439.5	261	tCc/tTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156451	106156451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	108	319	0	ENST00000380013.4:c.1352T>C	p.Ile451Thr	p.I451T	ENST00000380013	NM_001127208.2	451	aTa/aCa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149513170	149513170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	436	631	0	ENST00000261799.4:c.913G>A	p.Ala305Thr	p.A305T	ENST00000261799	NM_002609.3	305	Gcc/Acc																																																																														
MET	4233	MSKCC	GRCh37	7	116412063	116412063	+	intron_variant	Intron	SNP	T	T	A			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1504	643	630	0	ENST00000397752.3:c.3028+20T>A		p.*1010*	ENST00000397752	NM_000245.2																																																																																
ZRSR2	8233	MSKCC	GRCh37	X	15827356	15827356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	224	218	0	ENST00000307771.7:c.472C>T	p.Pro158Ser	p.P158S	ENST00000307771	NM_005089.3	158	Cca/Tca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0047459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	44	330	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11172458	11172458	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0047459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	56	672	0	ENST00000344626.4:c.4912-2A>C		p.X1638_splice	ENST00000344626	NM_003072.3	1638																																																																															
MED12	9968	MSKCC	GRCh37	X	70338641	70338641	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	88	376	0	ENST00000374080.3:c.40del	p.Leu14Ter	p.L14*	ENST00000374080		13	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0047460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	58	633	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0047460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	68	956	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870996	12871174	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTGGCAAGAGGTGGAGAAGGGCAGCTTGCCCGAGTTCTACTACAGACCCCCGCGGCCCCCCAAAGGTGCCTGCAAGGTGCCGGCGCAGGAGAGCCAGGATGTCAGCGGGAGCCGCCCGGCGGCGCCTTTAATTGGGGCTCCGGCTAACTCTGAGGACACGCATTTGGTGGACCCAAA	GAGTGGCAAGAGGTGGAGAAGGGCAGCTTGCCCGAGTTCTACTACAGACCCCCGCGGCCCCCCAAAGGTGCCTGCAAGGTGCCGGCGCAGGAGAGCCAGGATGTCAGCGGGAGCCGCCCGGCGGCGCCTTTAATTGGGGCTCCGGCTAACTCTGAGGACACGCATTTGGTGGACCCAAA	-			P-0047460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	57	420	0	ENST00000228872.4:c.225_403del	p.Glu75AspfsTer2	p.E75Dfs*2	ENST00000228872	NM_004064.3	75	GAGTGGCAAGAGGTGGAGAAGGGCAGCTTGCCCGAGTTCTACTACAGACCCCCGCGGCCCCCCAAAGGTGCCTGCAAGGTGCCGGCGCAGGAGAGCCAGGATGTCAGCGGGAGCCGCCCGGCGGCGCCTTTAATTGGGGCTCCGGCTAACTCTGAGGACACGCATTTGGTGGACCCAAAg/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	23	357	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0047461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	27	268	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																														
SRC	6714	MSKCC	GRCh37	20	36031708	36031708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	77	898	1	ENST00000358208.4:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000358208		513	Gag/Aag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898818	134898818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	25	242	0	ENST00000398015.3:c.1876G>A	p.Gly626Arg	p.G626R	ENST00000398015	NM_004441.4	626	Gga/Aga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412599	63412599	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	58	661	0	ENST00000330258.3:c.568del	p.Ser190ValfsTer19	p.S190Vfs*19	ENST00000330258	NM_152424.3	190	Agt/gt																																																																														
POLE	5426	MSKCC	GRCh37	12	133253176	133253176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	37	530	0	ENST00000320574.5:c.865G>A	p.Glu289Lys	p.E289K	ENST00000320574	NM_006231.2	289	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262160	16262160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	28	322	0	ENST00000375759.3:c.9425C>T	p.Pro3142Leu	p.P3142L	ENST00000375759	NM_015001.2	3142	cCa/cTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106559	27106559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	53	805	1	ENST00000324856.7:c.6170G>A	p.Arg2057Gln	p.R2057Q	ENST00000324856	NM_006015.4	2057	cGg/cAg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137205	64137205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	43	852	2	ENST00000334205.4:c.1637C>A	p.Pro546Gln	p.P546Q	ENST00000334205	NM_003942.2	546	cCg/cAg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668625	52668625	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	28	353	0	ENST00000394830.3:c.1294C>T	p.Gln432Ter	p.Q432*	ENST00000394830	NM_018313.4	432	Cag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169195	32169195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	46	850	1	ENST00000375023.3:c.3838G>A	p.Asp1280Asn	p.D1280N	ENST00000375023	NM_004557.3	1280	Gat/Aat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509387	106509387	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	367	578	0	ENST00000359195.3:c.1381C>G	p.Leu461Val	p.L461V	ENST00000359195	NM_002649.2	461	Ctc/Gtc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0047464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	30	242	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0047464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	30	242	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578264	7578268	+	frameshift_variant	Frame_Shift_Del	DEL	GATAA	GATAA	-			P-0047464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	39	589	0	ENST00000269305.4:c.581_585delTTATC	p.Leu194ProfsTer13	p.L194Pfs*13	ENST00000269305	NM_001126112.2	194	cTTATC/c																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5219364	5219364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	54	715	0	ENST00000357368.4:c.3880G>A	p.Val1294Ile	p.V1294I	ENST00000357368	NM_002850.3	1294	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	136	668	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	232	484	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	162	993	1	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																																																														
CUL3	8452	MSKCC	GRCh37	2	225339071	225339071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	36	282	0	ENST00000264414.4:c.2198G>T	p.Arg733Leu	p.R733L	ENST00000264414	NM_003590.4	733	cGa/cTa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834543	156834543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	319	825	0	ENST00000524377.1:c.311G>T	p.Arg104Leu	p.R104L	ENST00000524377	NM_002529.3	104	cGt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445091	49445091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	186	589	1	ENST00000301067.7:c.2375C>T	p.Ala792Val	p.A792V	ENST00000301067	NM_003482.3	792	gCt/gTt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88727516	88727516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	82	439	0	ENST00000360948.2:c.263G>T	p.Trp88Leu	p.W88L	ENST00000360948	NM_001012338.2	88	tGg/tTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29552122	29552140	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGTTCCTGTCACTTTC	AGAAGTTCCTGTCACTTTC	-			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	17	190	0	ENST00000358273.4:c.1855_1873del	p.Arg619SerfsTer6	p.R619Sfs*6	ENST00000358273	NM_001042492.2	619	AGAAGTTCCTGTCACTTTCtc/tc																																																																														
NF1	4763	MSKCC	GRCh37	17	29560127	29560127	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs146641724		P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	51	273	0	ENST00000358273.4:c.3604G>T	p.Ala1202Ser	p.A1202S	ENST00000358273	NM_001042492.2	1202	Gct/Tct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495222	212495222	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	31	402	0	ENST00000342788.4:c.2044A>G	p.Lys682Glu	p.K682E	ENST00000342788	NM_005235.2	682	Aag/Gag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038335	180038335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	43	630	0	ENST00000261937.6:c.3682G>T	p.Ala1228Ser	p.A1228S	ENST00000261937	NM_182925.4	1228	Gcc/Tcc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450237	50450237	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	37	390	0	ENST00000331340.3:c.422-1G>T		p.X141_splice	ENST00000331340	NM_006060.4	141																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932470	39932470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	68	726	0	ENST00000378444.4:c.2129G>T	p.Arg710Leu	p.R710L	ENST00000378444	NM_001123385.1	710	cGt/cTt																																																																														
ATM	472	MSKCC	GRCh37	11	108158357	108158357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	62	341	0	ENST00000278616.4:c.4024G>A	p.Glu1342Lys	p.E1342K	ENST00000278616	NM_000051.3	1342	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487160	56487160	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	190	422	0	ENST00000267101.3:c.1306T>A	p.Leu436Met	p.L436M	ENST00000267101	NM_001982.3	436	Ttg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			614	247	934	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118613	17118614	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	150	537	2	ENST00000285071.4:c.1317_1318delinsAT	p.Glu440Ter	p.E440*	ENST00000285071	NM_144997.5	439	gtGGag/gtATag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223162	5223162	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			674	272	1163	0	ENST00000357368.4:c.2641C>G	p.Leu881Val	p.L881V	ENST00000357368	NM_002850.3	881	Ctg/Gtg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399543	139399543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	249	899	0	ENST00000277541.6:c.4600C>G	p.Gln1534Glu	p.Q1534E	ENST00000277541	NM_017617.3	1534	Cag/Gag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966768	44966768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047468-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	56	234	0	ENST00000377967.4:c.3992G>T	p.Cys1331Phe	p.C1331F	ENST00000377967	NM_021140.2	1331	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	348	715	1	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	142	575	3	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992526	72992526	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	57	894	0	ENST00000268489.5:c.1519C>G	p.Pro507Ala	p.P507A	ENST00000268489	NM_006885.3	507	Ccc/Gcc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409934	139409934	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0047495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	83	837	0	ENST00000277541.6:c.1903+1G>T		p.X635_splice	ENST00000277541	NM_017617.3	635																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222632	53222632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	105	443	1	ENST00000375401.3:c.4304G>A	p.Arg1435His	p.R1435H	ENST00000375401	NM_004187.3	1435	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	588	396	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MGA	23269	MSKCC	GRCh37	15	41961399	41961399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	71	457	1	ENST00000219905.7:c.307C>T	p.Arg103Cys	p.R103C	ENST00000219905	NM_001164273.1	103	Cgc/Tgc																																																																														
MED12	9968	MSKCC	GRCh37	X	70347811	70347811	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	69	614	0	ENST00000374080.3:c.3050G>T	p.Trp1017Leu	p.W1017L	ENST00000374080		1017	tGg/tTg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998388	100998388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	47	203	0	ENST00000325455.5:c.1414C>A	p.Gln472Lys	p.Q472K	ENST00000325455	NM_001202474.3	472	Cag/Aag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061517	38061519	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	61	504	3	ENST00000250448.2:c.470_472del	p.Gly157del	p.G157del	ENST00000250448	NM_004496.3	157	gGCGac/gac																																																																														
MGA	23269	MSKCC	GRCh37	15	42058498	42058498	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	52	402	0	ENST00000219905.7:c.8218C>G	p.Gln2740Glu	p.Q2740E	ENST00000219905	NM_001164273.1	2740	Caa/Gaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467556	66467556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	48	333	0	ENST00000273854.3:c.713G>T	p.Arg238Leu	p.R238L	ENST00000273854	NM_004439.5	238	cGa/cTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509993	187509993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	81	467	0	ENST00000441802.2:c.13520G>T	p.Gly4507Val	p.G4507V	ENST00000441802	NM_005245.3	4507	gGt/gTt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946168	13946168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	96	641	0	ENST00000405192.2:c.928G>A	p.Gly310Arg	p.G310R	ENST00000405192	NM_001163147.1	310	Gga/Aga																																																																														
MED12	9968	MSKCC	GRCh37	X	70338656	70338656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	233	702	1	ENST00000374080.3:c.52C>T	p.Arg18Trp	p.R18W	ENST00000374080		18	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	831	719	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	234	541	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																														
CALR	811	MSKCC	GRCh37	19	13054650	13054658	+	inframe_deletion	In_Frame_Del	DEL	GAGGATGAG	GAGGATGAG	-	rs550353351		P-0047498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	137	603	0	ENST00000316448.5:c.1191_1199del	p.Glu398_Asp400del	p.E398_D400del	ENST00000316448	NM_004343.3	393	GAGGATGAG/-																																																																														
WT1	7490	MSKCC	GRCh37	11	32456363	32456363	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1467	550	892	0	ENST00000332351.3:c.529T>G	p.Tyr177Asp	p.Y177D	ENST00000332351	NM_024426.4	177	Tac/Gac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591075	67591075	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0047498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	70	246	0	ENST00000274335.5:c.1668T>G	p.Tyr556Ter	p.Y556*	ENST00000274335		556	taT/taG																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591131	67591142	+	inframe_deletion	In_Frame_Del	DEL	AGACGAGAGACC	AGACGAGAGACC	-			P-0047498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	125	287	0	ENST00000274335.5:c.1725_1736del	p.Thr576_Gln579del	p.T576_Q579del	ENST00000274335		575	aAGACGAGAGACCaa/aaa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577205	64577205	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	144	823	0	ENST00000337652.1:c.377G>A	p.Trp126Ter	p.W126*	ENST00000337652	NM_130803.2	126	tGg/tAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76875981	76875984	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	26	171	0	ENST00000373344.5:c.5151_5154del	p.Cys1718MetfsTer6	p.C1718Mfs*6	ENST00000373344	NM_000489.3	1717	gtTTGT/gt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161751	47161751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	55	346	0	ENST00000409792.3:c.4375C>T	p.Arg1459Ter	p.R1459*	ENST00000409792	NM_014159.6	1459	Cga/Tga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982975	201982982	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGGGAG	TGTGGGAG	-			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	172	815	0	ENST00000359651.3:c.825_832del	p.Trp276HisfsTer22	p.W276Hfs*22	ENST00000359651		275	cTGTGGGAG/c																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572212	64572242	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCTTCCTCGCCCCACGGCTCCTCGGCCT	CGGGCTTCCTCGCCCCACGGCTCCTCGGCCT	-			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	54	701	0	ENST00000337652.1:c.1412_1442del	p.Glu471GlyfsTer83	p.E471Gfs*83	ENST00000337652	NM_130803.2	471	gAGGCCGAGGAGCCGTGGGGCGAGGAAGCCCGg/gg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577298	64577305	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGTGAA	GCGGTGAA	-			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	46	861	0	ENST00000337652.1:c.277_284del	p.Phe93ProfsTer21	p.F93Pfs*21	ENST00000337652	NM_130803.2	93	TTCACCGCc/c																																																																														
ATRX	546	MSKCC	GRCh37	X	76891468	76891484	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGTTTCTTCATCTTC	TTGGTTTCTTCATCTTC	-			P-0047499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	144	346	0	ENST00000373344.5:c.4621_4637del	p.Glu1541ArgfsTer8	p.E1541Rfs*8	ENST00000373344	NM_000489.3	1541	GAAGATGAAGAAACCAAa/a																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	48	532	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120502076	120502076	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	27	455	0	ENST00000256646.2:c.1965C>G	p.Ile655Met	p.I655M	ENST00000256646	NM_024408.3	655	atC/atG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	160	383	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0047558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	231	424	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0047559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	209	502	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RB1	5925	MSKCC	GRCh37	13	49039505	49039505	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	106	289	0	ENST00000267163.4:c.2489+1G>A		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0047560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	180	503	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139402523	139402523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	345	884	0	ENST00000277541.6:c.3394C>T	p.Arg1132Cys	p.R1132C	ENST00000277541	NM_017617.3	1132	Cgc/Tgc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724646	162724646	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0047560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	128	293	0	ENST00000367921.3:c.417+1G>T		p.X139_splice	ENST00000367921	NM_006182.2	139																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855772	45855772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	218	673	0	ENST00000391945.4:c.2038G>T	p.Ala680Ser	p.A680S	ENST00000391945	NM_000400.3	680	Gcc/Tcc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39002755	39002755	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	69	183	0	ENST00000357387.3:c.274T>G	p.Leu92Val	p.L92V	ENST00000357387	NM_152756.3	92	Tta/Gta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	120	333	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	206	786	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971066	21971067	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	146	726	0	ENST00000304494.5:c.291dup	p.His98AlafsTer22	p.H98Afs*22	ENST00000304494	NM_000077.4	97	-/G																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971066	21971067	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	146	726	0	ENST00000304494.5:c.291dup	p.His98AlafsTer22	p.H98Afs*22	ENST00000304494	NM_000077.4	97	-/G																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971066	21971067	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	146	726	0	ENST00000304494.5:c.291dup	p.His98AlafsTer22	p.H98Afs*22	ENST00000304494	NM_000077.4	97	-/G																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	85	286	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101057	41101057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	177	632	0	ENST00000373198.4:c.1299G>T	p.Gln433His	p.Q433H	ENST00000373198	NM_133170.3	433	caG/caT																																																																														
DDR2	4921	MSKCC	GRCh37	1	162741955	162741955	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	231	390	0	ENST00000367921.3:c.1646C>A	p.Ser549Ter	p.S549*	ENST00000367921	NM_006182.2	549	tCa/tAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434694	49434694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	137	939	1	ENST00000301067.7:c.6859G>T	p.Val2287Leu	p.V2287L	ENST00000301067	NM_003482.3	2287	Gtg/Ttg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109776	115109776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	133	726	1	ENST00000257566.3:c.2102C>A	p.Ser701Tyr	p.S701Y	ENST00000257566	NM_016569.3	701	tCc/tAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29685585	29685585	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	69	347	0	ENST00000358273.4:c.8058G>C	p.Gln2686His	p.Q2686H	ENST00000358273	NM_001042492.2	2686	caG/caC																																																																														
STK11	6794	MSKCC	GRCh37	19	1221295	1221299	+	frameshift_variant	Frame_Shift_Del	DEL	CCATC	CCATC	-			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	212	663	0	ENST00000326873.7:c.820_824del	p.Ile274GlyfsTer9	p.I274Gfs*9	ENST00000326873	NM_000455.4	273	gCCATC/g																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610550	10610550	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	273	859	0	ENST00000171111.5:c.160T>G	p.Tyr54Asp	p.Y54D	ENST00000171111	NM_203500.1	54	Tac/Gac																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872497	136872497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	106	225	0	ENST00000241393.3:c.1001G>T	p.Arg334Leu	p.R334L	ENST00000241393	NM_003467.2	334	cGa/cTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55946181	55946181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	114	332	0	ENST00000263923.4:c.3998G>A	p.Gly1333Glu	p.G1333E	ENST00000263923	NM_002253.2	1333	gGa/gAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033177	69033177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	46	297	0	ENST00000288368.4:c.3617C>G	p.Pro1206Arg	p.P1206R	ENST00000288368	NM_024870.2	1206	cCa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	711	738	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0047565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	185	331	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222920	36222920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	971	986	0	ENST00000222270.7:c.5549G>T	p.Gly1850Val	p.G1850V	ENST00000222270	NM_014727.1	1850	gGc/gTc																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197447	26197447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	59	368	0	ENST00000356476.2:c.32C>A	p.Ser11Tyr	p.S11Y	ENST00000356476		11	tCc/tAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	79	383	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0047566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	106	380	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725042	89725042	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0047566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	79	212	0	ENST00000371953.3:c.1027-2A>G		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	77	278	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711887	89711887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	100	379	0	ENST00000371953.3:c.507delC	p.Ser170ValfsTer13	p.S170Vfs*13	ENST00000371953	NM_000314.4	169	Ccc/cc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645069	67645069	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	73	649	0	ENST00000264010.4:c.334G>T	p.Glu112Ter	p.E112*	ENST00000264010	NM_006565.3	112	Gaa/Taa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	68	595	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057811	27057811	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	100	936	1	ENST00000324856.7:c.1519C>T	p.Gln507Ter	p.Q507*	ENST00000324856	NM_006015.4	507	Caa/Taa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188078	11188078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	37	501	0	ENST00000361445.4:c.6016G>C	p.Val2006Leu	p.V2006L	ENST00000361445	NM_004958.3	2006	Gtc/Ctc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429354	78429354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	118	498	0	ENST00000370768.2:c.1088G>A	p.Arg363Lys	p.R363K	ENST00000370768	NM_003902.3	363	aGa/aAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670854	134670854	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	46	463	0	ENST00000398015.3:c.765C>A	p.Cys255Ter	p.C255*	ENST00000398015	NM_004441.4	255	tgC/tgA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66218783	66218783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	27	216	0	ENST00000273854.3:c.2275G>A	p.Gly759Ser	p.G759S	ENST00000273854	NM_004439.5	759	Ggc/Agc																																																																														
TET2	54790	MSKCC	GRCh37	4	106193920	106193920	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	68	269	0	ENST00000380013.4:c.4382T>G	p.Val1461Gly	p.V1461G	ENST00000380013	NM_001127208.2	1461	gTc/gGc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741704	145741713	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCGTTCCA	CCTCGTTCCA	-			P-0046973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	137	950	0	ENST00000428558.2:c.790_799del	p.Trp264SerfsTer26	p.W264Sfs*26	ENST00000428558	NM_004260.3	264	TGGAACGAGGag/ag																																																																														
RHOA	387	MSKCC	GRCh37	3	49413010	49413010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	17	452	1	ENST00000418115.1:c.13C>T	p.Arg5Trp	p.R5W	ENST00000418115	NM_001664.2	5	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	140	647	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	42	643	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	43	248	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	14	506	1	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349090	11349090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	40	366	0	ENST00000332029.2:c.246del	p.Leu84Ter	p.L84*	ENST00000332029	NM_003745.1	82	ggG/gg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	34	733	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911116	29911116	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	38	899	0	ENST00000376809.5:c.415C>T	p.Gln139Ter	p.Q139*	ENST00000376809	NM_002116.7	139	Cag/Tag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	12	360	0	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	55	456	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	23	435	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	16	216	1	ENST00000462284.1:c.961delC	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713414	40713414	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	22	647	1	ENST00000373198.4:c.4101del	p.Ser1368ProfsTer31	p.S1368Pfs*31	ENST00000373198	NM_133170.3	1367	ccC/cc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45864886	45864886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200043231		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	29	720	1	ENST00000391945.4:c.1133G>A	p.Arg378His	p.R378H	ENST00000391945	NM_000400.3	378	cGc/cAc																																																																														
PGR	5241	MSKCC	GRCh37	11	100999560	100999560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	19	825	1	ENST00000325455.5:c.242C>T	p.Ser81Leu	p.S81L	ENST00000325455	NM_001202474.3	81	tCg/tTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42798450	42798450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142012810		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	26	619	0	ENST00000575354.2:c.4321C>T	p.Arg1441Cys	p.R1441C	ENST00000575354	NM_015125.3	1441	Cgt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133225574	133225574	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	13	643	0	ENST00000320574.5:c.4090del	p.Arg1364ValfsTer5	p.R1364Vfs*5	ENST00000320574	NM_006231.2	1364	Cgt/gt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	26	816	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461508	138461508	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	10	380	2	ENST00000289153.2:c.513G>A	p.Trp171Ter	p.W171*	ENST00000289153	NM_006219.2	171	tgG/tgA																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	17	360	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746075	162746075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	14	261	0	ENST00000367921.3:c.2198G>A	p.Arg733Lys	p.R733K	ENST00000367921	NM_006182.2	733	aGg/aAg																																																																														
TEK	7010	MSKCC	GRCh37	9	27158026	27158026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	12	451	0	ENST00000380036.4:c.255del	p.Val86LeufsTer31	p.V86Lfs*31	ENST00000380036	NM_000459.3	84	Aaa/aa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753452	42753452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	48	838	3	ENST00000222329.4:c.812C>T	p.Thr271Met	p.T271M	ENST00000222329	NM_006494.2	271	aCg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36215621	36215621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	26	694	0	ENST00000222270.7:c.3418C>T	p.Arg1140Cys	p.R1140C	ENST00000222270	NM_014727.1	1140	Cgc/Tgc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141595382	141595382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	15	557	0	ENST00000220592.5:c.51del	p.Ile18SerfsTer121	p.I18Sfs*121	ENST00000220592	NM_012154.3	17	ccC/cc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324221	31324221	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	18	622	0	ENST00000412585.2:c.344-2A>G		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271919	15271919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	12	919	1	ENST00000263388.2:c.6520C>T	p.Arg2174Trp	p.R2174W	ENST00000263388	NM_000435.2	2174	Cgg/Tgg																																																																														
FAM58A	0	MSKCC	GRCh37	X	152861563	152861563	+	synonymous_variant	Silent	SNP	G	G	A	rs139660436		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	16	610	0	ENST00000406277.2:c.189C>T	p.Asp63=	p.D63=	ENST00000406277	NM_152274.4	63	gaC/gaT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600036	10600036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	32	632	0	ENST00000171111.5:c.1540G>A	p.Val514Ile	p.V514I	ENST00000171111	NM_203500.1	514	Gtc/Atc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9778839	9778839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143521812		P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	39	644	1	ENST00000377346.4:c.1108G>A	p.Val370Met	p.V370M	ENST00000377346	NM_005026.3	370	Gtg/Atg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484606	57484606	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	26	409	0	ENST00000371085.3:c.690A>T	p.Glu230Asp	p.E230D	ENST00000371085	NM_000516.4	230	gaA/gaT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261154	16261154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	28	360	3	ENST00000375759.3:c.8419C>T	p.Arg2807Cys	p.R2807C	ENST00000375759	NM_015001.2	2807	Cgt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246126	46246126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	13	248	0	ENST00000334344.6:c.4220C>T	p.Ala1407Val	p.A1407V	ENST00000334344	NM_152641.2	1407	gCc/gTc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762168	43762168	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	17	572	0	ENST00000382044.4:c.1277del	p.Pro426LeufsTer65	p.P426Lfs*65	ENST00000382044	NM_001141980.1	426	cCt/ct																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43771659	43771659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	20	446	1	ENST00000382044.4:c.724C>A	p.Pro242Thr	p.P242T	ENST00000382044	NM_001141980.1	242	Cct/Act																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215920	41215920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	14	349	0	ENST00000357654.3:c.5123C>T	p.Ala1708Val	p.A1708V	ENST00000357654	NM_007294.3	1708	gCg/gTg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131238	202131238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	11	259	0	ENST00000358485.4:c.206T>C	p.Ile69Thr	p.I69T	ENST00000358485	NM_001080125.1	69	aTt/aCt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57466785	57466785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	13	104	0	ENST00000371085.3:c.4G>T	p.Gly2Cys	p.G2C	ENST00000371085	NM_000516.4	2	Ggc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562747	176562747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	27	359	1	ENST00000439151.2:c.643C>T	p.Pro215Ser	p.P215S	ENST00000439151	NM_022455.4	215	Cca/Tca																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056312	180056312	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	11	754	1	ENST00000261937.6:c.932A>C	p.Lys311Thr	p.K311T	ENST00000261937	NM_182925.4	311	aAg/aCg																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271491	26271491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	77	453	0	ENST00000305910.3:c.122G>A	p.Arg41His	p.R41H	ENST00000305910	NM_003534.2	41	cGc/cAc																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778069	27778069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	69	546	0	ENST00000369163.2:c.218G>A	p.Arg73His	p.R73H	ENST00000369163	NM_003536.2	73	cGt/cAt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32165266	32165266	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	35	809	0	ENST00000375023.3:c.4862A>G	p.Asp1621Gly	p.D1621G	ENST00000375023	NM_004557.3	1621	gAt/gGt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570289	87570289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	11	526	0	ENST00000277120.3:c.2029G>A	p.Ala677Thr	p.A677T	ENST00000277120		677	Gcc/Acc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411777	63411777	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	12	628	0	ENST00000330258.3:c.1390G>C	p.Ala464Pro	p.A464P	ENST00000330258	NM_152424.3	464	Gcc/Ccc																																																																														
AR	367	MSKCC	GRCh37	X	66766114	66766114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	20	609	0	ENST00000374690.3:c.1126C>A	p.Pro376Thr	p.P376T	ENST00000374690	NM_000044.3	376	Ccc/Acc																																																																														
ATRX	546	MSKCC	GRCh37	X	76777820	76777820	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	20	424	0	ENST00000373344.5:c.6896del	p.Pro2299LeufsTer21	p.P2299Lfs*21	ENST00000373344	NM_000489.3	2299	cCt/ct																																																																														
MALT1	10892	MSKCC	GRCh37	18	56376756	56376756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	24	339	0	ENST00000348428.3:c.796C>A	p.Pro266Thr	p.P266T	ENST00000348428	NM_006785.3	266	Cca/Aca																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228280	53228280	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	23	367	0	ENST00000375401.3:c.2122A>T	p.Ile708Phe	p.I708F	ENST00000375401	NM_004187.3	708	Atc/Ttc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78433847	78433848	+	splice_donor_variant	Splice_Site	DEL	AC	AC	-			P-0047289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	41	313	1	ENST00000370768.2:c.250+1_250+2del		p.X84_splice	ENST00000370768	NM_003902.3	84																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	64	458	0	ENST00000342988.3:c.1064A>T	p.Asp355Val	p.D355V	ENST00000342988	NM_005359.5	355	gAc/gTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156037	106156037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	98	326	0	ENST00000380013.4:c.938C>T	p.Thr313Ile	p.T313I	ENST00000380013	NM_001127208.2	313	aCc/aTc																																																																														
SYK	6850	MSKCC	GRCh37	9	93641096	93641096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	62	554	0	ENST00000375746.1:c.1442G>A	p.Gly481Asp	p.G481D	ENST00000375746	NM_001174167.1	481	gGc/gAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932447	39932447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	33	377	0	ENST00000378444.4:c.2152G>A	p.Asp718Asn	p.D718N	ENST00000378444	NM_001123385.1	718	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398285	+	missense_variant	Missense_Mutation	ONP	CACC	CACC	AACA			P-0047289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	169	448	0	ENST00000256078.4:c.34_37delinsTGTT	p.Gly12_Gly13delinsCysCys	p.G12_G13delinsCC	ENST00000256078	NM_033360.2	12	GGTGgc/TGTTgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	54	840	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139794922	139794922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	46	653	1	ENST00000247668.2:c.316G>A	p.Val106Ile	p.V106I	ENST00000247668	NM_021138.3	106	Gtc/Atc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130279	2130279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	62	895	0	ENST00000219476.3:c.3511G>C	p.Ala1171Pro	p.A1171P	ENST00000219476	NM_000548.3	1171	Gct/Cct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223716	36223716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	65	1059	0	ENST00000222270.7:c.6266G>T	p.Gly2089Val	p.G2089V	ENST00000222270	NM_014727.1	2089	gGa/gTa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661182	227661182	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	60	841	0	ENST00000305123.5:c.2273A>G	p.His758Arg	p.H758R	ENST00000305123	NM_005544.2	758	cAc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	275	948	1	ENST00000269305.4:c.487T>G	p.Tyr163Asp	p.Y163D	ENST00000269305	NM_001126112.2	163	Tac/Gac																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99486192	99486192	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	79	576	0	ENST00000268035.6:c.3498C>A	p.Tyr1166Ter	p.Y1166*	ENST00000268035	NM_000875.3	1166	taC/taA																																																																														
ATRX	546	MSKCC	GRCh37	X	76938292	76938292	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	89	469	0	ENST00000373344.5:c.2456C>A	p.Ser819Ter	p.S819*	ENST00000373344	NM_000489.3	819	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	370	760	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350146	89350146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	274	780	0	ENST00000301030.4:c.2804C>T	p.Ser935Leu	p.S935L	ENST00000301030	NM_001256183.1	935	tCg/tTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189612061	189612061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	61	538	0	ENST00000264731.3:c.1813C>T	p.Arg605Trp	p.R605W	ENST00000264731	NM_003722.4	605	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214636	5214636	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532712500		P-0047306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	171	950	0	ENST00000357368.4:c.4430G>A	p.Arg1477His	p.R1477H	ENST00000357368	NM_002850.3	1477	cGt/cAt																																																																														
TEK	7010	MSKCC	GRCh37	9	27180357	27180357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	84	323	0	ENST00000380036.4:c.1021G>A	p.Glu341Lys	p.E341K	ENST00000380036	NM_000459.3	341	Gag/Aag																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612905	228612905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	276	662	0	ENST00000366696.1:c.122G>A	p.Arg41His	p.R41H	ENST00000366696	NM_003493.2	41	cGc/cAc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259306	36259307	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGC			P-0047306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	90	369	0	ENST00000300305.3:c.184_185insGCGG	p.Asp62GlyfsTer77	p.D62Gfs*77	ENST00000300305		62	gac/gGCGGac																																																																														
BTK	695	MSKCC	GRCh37	X	100615635	100615635	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	40	512	0	ENST00000308731.7:c.697C>G	p.Leu233Val	p.L233V	ENST00000308731	NM_000061.2	233	Cta/Gta																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0047328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	268	561	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577560	7577566	+	frameshift_variant	Frame_Shift_Del	DEL	AACTGTT	AACTGTT	-			P-0047328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	192	610	0	ENST00000269305.4:c.715_721del	p.Asn239ProfsTer6	p.N239Pfs*6	ENST00000269305	NM_001126112.2	239	AACAGTTcc/cc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117650575	117650575	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	133	439	0	ENST00000368508.3:c.5283A>C	p.Leu1761Phe	p.L1761F	ENST00000368508	NM_002944.2	1761	ttA/ttC																																																																														
NUF2	83540	MSKCC	GRCh37	1	163315571	163315571	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	78	278	0	ENST00000271452.3:c.911C>A	p.Ser304Ter	p.S304*	ENST00000271452	NM_145697.2	304	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	100	804	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																														
MCL1	4170	MSKCC	GRCh37	1	150550728	150550734	+	frameshift_variant	Frame_Shift_Del	DEL	TTTGTTT	TTTGTTT	CA			P-0047332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	57	407	1	ENST00000369026.2:c.922_928delinsTG	p.Lys308TrpfsTer46	p.K308Wfs*46	ENST00000369026	NM_021960.4	308	AAACAAAga/TGga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057682	27057682	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	624	621	1	ENST00000324856.7:c.1390C>T	p.Gln464Ter	p.Q464*	ENST00000324856	NM_006015.4	464	Caa/Taa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	215	159	0	ENST00000397062.3:c.72G>C	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgC																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499354	89499354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	117	415	0	ENST00000336596.2:c.2524C>T	p.Arg842Ter	p.R842*	ENST00000336596	NM_005233.5	842	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	357	666	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
BCL10	8915	MSKCC	GRCh37	1	85733480	85733480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	139	320	0	ENST00000370580.1:c.532G>C	p.Glu178Gln	p.E178Q	ENST00000370580	NM_003921.4	178	Gaa/Caa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21627813	21627813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	310	481	1	ENST00000421138.2:c.1317G>T	p.Lys439Asn	p.K439N	ENST00000421138		439	aaG/aaT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272321	15272321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	510	882	0	ENST00000263388.2:c.6118G>T	p.Gly2040Trp	p.G2040W	ENST00000263388	NM_000435.2	2040	Ggg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165113	47165113	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	163	149	0	ENST00000409792.3:c.1013A>T	p.Asp338Val	p.D338V	ENST00000409792	NM_014159.6	338	gAt/gTt																																																																														
KIT	3815	MSKCC	GRCh37	4	55602711	55602711	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	247	321	0	ENST00000288135.5:c.2532T>A	p.Cys844Ter	p.C844*	ENST00000288135	NM_000222.2	844	tgT/tgA																																																																														
TET2	54790	MSKCC	GRCh37	4	106190848	106190848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	293	497	0	ENST00000380013.4:c.4126G>C	p.Asp1376His	p.D1376H	ENST00000380013	NM_001127208.2	1376	Gac/Cac																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38153468	38153468	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	281	333	0	ENST00000317025.8:c.2761G>T	p.Gly921Ter	p.G921*	ENST00000317025	NM_023034.1	921	Gga/Tga																																																																														
LYN	4067	MSKCC	GRCh37	8	56882324	56882324	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	539	497	0	ENST00000519728.1:c.1022T>C	p.Leu341Pro	p.L341P	ENST00000519728	NM_002350.3	341	cTt/cCt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932189	39932189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	249	419	0	ENST00000378444.4:c.2410G>A	p.Val804Ile	p.V804I	ENST00000378444	NM_001123385.1	804	Gtc/Atc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971199	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	ATT			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	145	461	1	ENST00000304494.5:c.159_162delinsAAT	p.Met53IlefsTer93	p.M53Ifs*93	ENST00000304494	NM_000077.4	53	atGATG/atAAT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971199	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	ATT			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	145	461	1	ENST00000304494.5:c.159_162delinsAAT	p.Met53IlefsTer93	p.M53Ifs*93	ENST00000304494	NM_000077.4	53	atGATG/atAAT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971199	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	ATT			P-0047335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	145	461	1	ENST00000304494.5:c.159_162delinsAAT	p.Met53IlefsTer93	p.M53Ifs*93	ENST00000304494	NM_000077.4	53	atGATG/atAAT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	89	262	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	113	511	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1348	146	636	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417596	139417596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1433	179	1049	1	ENST00000277541.6:c.448G>A	p.Ala150Thr	p.A150T	ENST00000277541	NM_017617.3	150	Gcc/Acc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185184750	185184750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	38	315	1	ENST00000265026.3:c.1642C>T	p.Arg548Trp	p.R548W	ENST00000265026	NM_004721.4	548	Cgg/Tgg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1410	114	991	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
VHL	7428	MSKCC	GRCh37	3	10188200	10188200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs5030811		P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	80	523	0	ENST00000256474.2:c.343C>T	p.His115Tyr	p.H115Y	ENST00000256474	NM_000551.3	115	Cac/Tac																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26029193	26029195	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	49	298	0	ENST00000435504.4:c.155_157del	p.Pro52del	p.P52del	ENST00000435504		52	cCTCtt/ctt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903755	114903755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	95	554	0	ENST00000543371.1:c.763del	p.His255IlefsTer3	p.H255Ifs*3	ENST00000543371	NM_001198531.1	253	atC/at																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	146	840	0	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1207	118	886	2	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161938	47161939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	47	337	0	ENST00000409792.3:c.4187dup	p.Asn1396LysfsTer2	p.N1396Kfs*2	ENST00000409792	NM_014159.6	1396	aat/aaAt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228265	53228265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	109	756	0	ENST00000375401.3:c.2137A>G	p.Thr713Ala	p.T713A	ENST00000375401	NM_004187.3	713	Acg/Gcg																																																																														
KDR	3791	MSKCC	GRCh37	4	55976876	55976876	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	84	648	0	ENST00000263923.4:c.1036del	p.Glu346SerfsTer17	p.E346Sfs*17	ENST00000263923	NM_002253.2	346	Gag/ag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760966	59760967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs753683450		P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	65	518	0	ENST00000259008.2:c.3440dup	p.Asn1147LysfsTer2	p.N1147Kfs*2	ENST00000259008	NM_032043.2	1147	aat/aaAt																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945054	31945054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1339	125	814	1	ENST00000340398.3:c.47C>T	p.Ala16Val	p.A16V	ENST00000340398	NM_001013699.2	16	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436113	49436113	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	77	446	1	ENST00000301067.7:c.5868G>T	p.Arg1956Ser	p.R1956S	ENST00000301067	NM_003482.3	1956	agG/agT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830526	72830526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	91	642	2	ENST00000268489.5:c.6055G>A	p.Ala2019Thr	p.A2019T	ENST00000268489	NM_006885.3	2019	Gcc/Acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993371	72993371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	134	848	0	ENST00000268489.5:c.674G>T	p.Ser225Ile	p.S225I	ENST00000268489	NM_006885.3	225	aGc/aTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350679	89350679	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	131	798	0	ENST00000301030.4:c.2271delA	p.Lys757AsnfsTer2	p.K757Nfs*2	ENST00000301030	NM_001256183.1	757	aaA/aa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252751	10252751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1226	134	848	3	ENST00000340748.4:c.3214G>A	p.Val1072Ile	p.V1072I	ENST00000340748		1072	Gtc/Atc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37042521	37042522	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	46	474	0	ENST00000231790.2:c.284_285del	p.Ser95TyrfsTer7	p.S95Yfs*7	ENST00000231790	NM_000249.3	95	TCt/t																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620686	52620686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	34	315	0	ENST00000394830.3:c.3067C>T	p.Pro1023Ser	p.P1023S	ENST00000394830	NM_018313.4	1023	Cca/Tca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38943020	38943020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	63	304	0	ENST00000357387.3:c.4967T>C	p.Val1656Ala	p.V1656A	ENST00000357387	NM_152756.3	1656	gTt/gCt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638240	176638240	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	100	752	0	ENST00000439151.2:c.2840A>T	p.Asn947Ile	p.N947I	ENST00000439151	NM_022455.4	947	aAt/aTt																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800185	32800185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	70	424	0	ENST00000374899.4:c.1197G>A	p.Met399Ile	p.M399I	ENST00000374899	NM_018833.2	399	atG/atA																																																																														
TAP1	6890	MSKCC	GRCh37	6	32813561	32813561	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	91	441	0	ENST00000354258.4:c.2222T>C	p.Val741Ala	p.V741A	ENST00000354258	NM_000593.5	741	gTg/gCg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816782	32816782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	94	674	0	ENST00000354258.4:c.1542C>A	p.Phe514Leu	p.F514L	ENST00000354258	NM_000593.5	514	ttC/ttA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046345	69046345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	77	518	0	ENST00000288368.4:c.3818C>T	p.Ala1273Val	p.A1273V	ENST00000288368	NM_024870.2	1273	gCc/gTc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87339212	87339212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	73	509	1	ENST00000277120.3:c.794C>A	p.Ser265Tyr	p.S265Y	ENST00000277120		265	tCt/tAt																																																																														
AR	367	MSKCC	GRCh37	X	66942755	66942755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	65	493	0	ENST00000374690.3:c.2539del	p.Arg847GlufsTer36	p.R847Efs*36	ENST00000374690	NM_000044.3	846	Aaa/aa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436371	52436383	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCGATGCTGA	CGGCCGATGCTGA	TGG			P-0047336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	127	908	3	ENST00000460680.1:c.2111_2123delinsCCA	p.Val704AlafsTer29	p.V704Afs*29	ENST00000460680	NM_004656.3	704	gTCAGCATCGGCCGg/gCCAg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6414399	6414399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	76	194	0	ENST00000356142.4:c.33C>A	p.Asp11Glu	p.D11E	ENST00000356142	NM_018890.3	11	gaC/gaA																																																																														
MDM2	4193	MSKCC	GRCh37	12	69222593	69222593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	70	322	1	ENST00000462284.1:c.566G>A	p.Arg189His	p.R189H	ENST00000462284	NM_002392.5	189	cGc/cAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566521	41566521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	76	291	0	ENST00000263253.7:c.4398G>C	p.Trp1466Cys	p.W1466C	ENST00000263253	NM_001429.3	1466	tgG/tgC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151882717	151882717	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	23	196	0	ENST00000262189.6:c.5009-1G>C		p.X1670_splice	ENST00000262189	NM_170606.2	1670																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430854	78430854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	135	368	0	ENST00000370768.2:c.535C>T	p.His179Tyr	p.H179Y	ENST00000370768	NM_003902.3	179	Cat/Tat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779698	3779698	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	156	690	0	ENST00000262367.5:c.5350C>T	p.Gln1784Ter	p.Q1784*	ENST00000262367	NM_004380.2	1784	Cag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781273	3781273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	242	868	0	ENST00000262367.5:c.5092C>G	p.Gln1698Glu	p.Q1698E	ENST00000262367	NM_004380.2	1698	Cag/Gag																																																																														
NF2	4771	MSKCC	GRCh37	22	30074308	30074308	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	80	291	0	ENST00000338641.4:c.1570G>T	p.Glu524Ter	p.E524*	ENST00000338641	NM_000268.3	524	Gaa/Taa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028871	47028871	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	139	527	0	ENST00000329236.7:c.175G>T	p.Asp59Tyr	p.D59Y	ENST00000329236	NM_001204466.1	59	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	119	308	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0047358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	118	424	2	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
RRAS	6237	MSKCC	GRCh37	19	50143309	50143309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	15	103	0	ENST00000246792.3:c.47G>A	p.Gly16Asp	p.G16D	ENST00000246792	NM_006270.3	16	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	459	569	1	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																														
MRE11A	0	MSKCC	GRCh37	11	94201032	94201032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	78	253	0	ENST00000323929.3:c.1045C>T	p.Arg349Trp	p.R349W	ENST00000323929	NM_005591.3	349	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444803	49444829	+	inframe_deletion	In_Frame_Del	DEL	TCCCCAGGGGGAGGGAACAAGGGCAGC	TCCCCAGGGGGAGGGAACAAGGGCAGC	-			P-0047362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	183	651	0	ENST00000301067.7:c.2637_2663del	p.Leu880_Glu888del	p.L880_E888del	ENST00000301067	NM_003482.3	879	gaGCTGCCCTTGTTCCCTCCCCCTGGGGAa/gaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468316	50468316	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	73	474	0	ENST00000331340.3:c.1551del	p.His517GlnfsTer2	p.H517Qfs*2	ENST00000331340	NM_006060.4	517	caC/ca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517901	8517901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	97	249	0	ENST00000356435.5:c.1490C>A	p.Ser497Ter	p.S497*	ENST00000356435		497	tCa/tAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0047313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	163	930	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	189	805	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39311710	39311710	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs151267022		P-0047313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	120	790	0	ENST00000373001.3:c.949A>G	p.Ile317Val	p.I317V	ENST00000373001	NM_022157.3	317	Att/Gtt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979345	93979345	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	59	466	0	ENST00000369303.4:c.1483A>T	p.Thr495Ser	p.T495S	ENST00000369303	NM_004440.3	495	Acc/Tcc																																																																														
MED12	9968	MSKCC	GRCh37	X	70357218	70357220	+	frameshift_variant	Frame_Shift_Del	DEL	TCG	TCG	C			P-0047313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	167	729	0	ENST00000374080.3:c.5733_5735delinsC	p.Arg1912ProfsTer138	p.R1912Pfs*138	ENST00000374080		1911	ctTCGc/ctCc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0047315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	149	374	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444401	50444401	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	106	475	1	ENST00000331340.3:c.331C>T	p.Arg111Ter	p.R111*	ENST00000331340	NM_006060.4	111	Cga/Tga																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336095	73336095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	92	227	0	ENST00000377767.4:c.2308C>T	p.Pro770Ser	p.P770S	ENST00000377767	NM_014953.3	770	Cca/Tca																																																																														
HGF	3082	MSKCC	GRCh37	7	81372693	81372693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	144	327	0	ENST00000222390.5:c.841G>A	p.Glu281Lys	p.E281K	ENST00000222390	NM_000601.4	281	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295217	1295217	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0047315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	274	279	0				ENST00000310581	NM_198253.2																																																																																
IGF1	3479	MSKCC	GRCh37	12	102813330	102813330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	255	749	1	ENST00000307046.8:c.359C>T	p.Ser120Phe	p.S120F	ENST00000307046	NM_001111285.1	120	tCt/tTt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56875711	56875711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	118	615	0	ENST00000308159.5:c.2315C>T	p.Ser772Phe	p.S772F	ENST00000308159	NM_014669.4	772	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992192	72992192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	132	951	0	ENST00000268489.5:c.1853C>T	p.Pro618Leu	p.P618L	ENST00000268489	NM_006885.3	618	cCc/cTc																																																																														
CASP8	841	MSKCC	GRCh37	2	202131398	202131399	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0047315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	77	530	0	ENST00000358485.4:c.366_367delinsAA	p.Glu123Lys	p.E123K	ENST00000358485	NM_001080125.1	122	aaGGag/aaAAag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643972	52643972	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0047315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	108	251	0	ENST00000394830.3:c.1925-1G>A		p.X642_splice	ENST00000394830	NM_018313.4	642																																																																															
FAM175A	0	MSKCC	GRCh37	4	84384688	84384688	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114513239		P-0047315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	252	432	0	ENST00000321945.7:c.755G>A	p.Arg252Gln	p.R252Q	ENST00000321945	NM_139076.2	252	cGa/cAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591128	67591128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	94	293	0	ENST00000274335.5:c.1721G>A	p.Arg574Lys	p.R574K	ENST00000274335		574	aGa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	580	458	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467924	50467924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	108	753	0	ENST00000331340.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000331340	NM_006060.4	387	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991329	72991329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	131	592	0	ENST00000268489.5:c.2716C>G	p.Leu906Val	p.L906V	ENST00000268489	NM_006885.3	906	Cta/Gta																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488715	212488715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	203	564	0	ENST00000342788.4:c.2134A>G	p.Ile712Val	p.I712V	ENST00000342788	NM_005235.2	712	Att/Gtt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444387	50444387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	172	492	0	ENST00000331340.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000331340	NM_006060.4	106	gGa/gTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859462	151859462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	114	542	0	ENST00000262189.6:c.11200C>G	p.Pro3734Ala	p.P3734A	ENST00000262189	NM_170606.2	3734	Cct/Gct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	321	694	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	86	290	0				ENST00000310581	NM_198253.2																																																																																
SYK	6850	MSKCC	GRCh37	9	93650109	93650109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	231	550	1	ENST00000375746.1:c.1660G>A	p.Asp554Asn	p.D554N	ENST00000375746	NM_001174167.1	554	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100375	27100375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	238	580	0	ENST00000324856.7:c.4087C>T	p.Gln1363Ter	p.Q1363*	ENST00000324856	NM_006015.4	1363	Caa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	252	520	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	252	520	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164268	47164268	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	88	245	0	ENST00000409792.3:c.1858C>T	p.Arg620Ter	p.R620*	ENST00000409792	NM_014159.6	620	Cga/Tga																																																																														
PAK7	0	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	216	505	0	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729679	41729679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	274	724	1	ENST00000242208.4:c.850G>A	p.Glu284Lys	p.E284K	ENST00000242208	NM_002192.2	284	Gaa/Aaa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622630	158622630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	182	430	1	ENST00000263640.3:c.869C>T	p.Ser290Leu	p.S290L	ENST00000263640	NM_001105.4	290	tCg/tTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793483	18793483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	119	244	1	ENST00000266497.5:c.4180G>A	p.Glu1394Lys	p.E1394K	ENST00000266497		1394	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	280	572	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066501	94066501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	143	343	0	ENST00000369303.4:c.1258G>A	p.Gly420Arg	p.G420R	ENST00000369303	NM_004440.3	420	Gga/Aga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341914	8341914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	123	349	0	ENST00000356435.5:c.4726G>A	p.Glu1576Lys	p.E1576K	ENST00000356435		1576	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120377	94120377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	137	252	0	ENST00000369303.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000369303	NM_004440.3	225	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829797	72829797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	335	643	0	ENST00000268489.5:c.6784G>A	p.Asp2262Asn	p.D2262N	ENST00000268489	NM_006885.3	2262	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1278890	1278890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	327	838	0	ENST00000310581.5:c.2152G>A	p.Asp718Asn	p.D718N	ENST00000310581	NM_198253.2	718	Gac/Aac																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811603	102811603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	215	540	0	ENST00000307046.8:c.581G>A	p.Gly194Glu	p.G194E	ENST00000307046	NM_001111285.1	194	gGa/gAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857425	9857425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	197	491	0	ENST00000330684.3:c.3976G>A	p.Gly1326Ser	p.G1326S	ENST00000330684	NM_001134407.1	1326	Ggc/Agc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25457192	25457192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	319	611	0	ENST00000264709.3:c.2695C>T	p.Arg899Cys	p.R899C	ENST00000264709	NM_175629.2	899	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	200	473	0	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																														
KIT	3815	MSKCC	GRCh37	4	55595553	55595553	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	137	315	0	ENST00000288135.5:c.2043T>G	p.Phe681Leu	p.F681L	ENST00000288135	NM_000222.2	681	ttT/ttG																																																																														
TERT	7015	MSKCC	GRCh37	5	1268704	1268704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	336	949	3	ENST00000310581.5:c.2513C>T	p.Ser838Phe	p.S838F	ENST00000310581	NM_198253.2	838	tCc/tTc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131930595	131930595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	109	213	0	ENST00000265335.6:c.1828C>T	p.His610Tyr	p.H610Y	ENST00000265335		610	Cat/Tat																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	365	788	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857172	9857172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	182	498	0	ENST00000330684.3:c.4229C>T	p.Ser1410Leu	p.S1410L	ENST00000330684	NM_001134407.1	1410	tCg/tTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81392143	81392143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	73	211	0	ENST00000222390.5:c.134C>T	p.Ser45Leu	p.S45L	ENST00000222390	NM_000601.4	45	tCa/tTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69050711	69050711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	136	325	0	ENST00000288368.4:c.4046C>T	p.Ser1349Phe	p.S1349F	ENST00000288368	NM_024870.2	1349	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790031	40790031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	280	612	0	ENST00000373198.4:c.2700G>A	p.Met900Ile	p.M900I	ENST00000373198	NM_133170.3	900	atG/atA																																																																														
NF2	4771	MSKCC	GRCh37	22	30090763	30090763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	270	712	0	ENST00000338641.4:c.1760C>T	p.Ser587Phe	p.S587F	ENST00000338641	NM_000268.3	587	tCc/tTc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610228	81610228	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139352934		P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	214	445	0	ENST00000298171.2:c.1826G>A	p.Arg609Gln	p.R609Q	ENST00000298171	NM_000369.2	609	cGa/cAa																																																																														
CBL	867	MSKCC	GRCh37	11	119077192	119077192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	563	677	0	ENST00000264033.4:c.65C>T	p.Ser22Leu	p.S22L	ENST00000264033	NM_005188.3	22	tCg/tTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29652995	29652996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	199	446	0	ENST00000358273.4:c.4998dup	p.Pro1667SerfsTer15	p.P1667Sfs*15	ENST00000358273	NM_001042492.2	1665	gtt/gTtt																																																																														
SESN1	27244	MSKCC	GRCh37	6	109322511	109322511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	183	426	0	ENST00000436639.2:c.526C>T	p.Arg176Cys	p.R176C	ENST00000436639	NM_014454.2	176	Cgt/Tgt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396184	396184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	259	662	0	ENST00000262320.3:c.842C>T	p.Ser281Phe	p.S281F	ENST00000262320	NM_003502.3	281	tCc/tTc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961526	54961526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	218	447	0	ENST00000312783.6:c.106C>T	p.Pro36Ser	p.P36S	ENST00000312783	NM_198436.1	36	Cca/Tca																																																																														
RET	5979	MSKCC	GRCh37	10	43609027	43609027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	255	687	1	ENST00000355710.3:c.1783G>A	p.Glu595Lys	p.E595K	ENST00000355710	NM_020975.4	595	Gag/Aag																																																																														
TP63	8626	MSKCC	GRCh37	3	189604206	189604206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	148	475	0	ENST00000264731.3:c.1373C>T	p.Ser458Leu	p.S458L	ENST00000264731	NM_003722.4	458	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427387	49427387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	303	803	0	ENST00000301067.7:c.11101C>T	p.Pro3701Ser	p.P3701S	ENST00000301067	NM_003482.3	3701	Cct/Tct																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275843	38275843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	292	748	1	ENST00000425967.3:c.1426C>T	p.Arg476Trp	p.R476W	ENST00000425967	NM_001174067.1	476	Cgg/Tgg																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46532683	46532683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	252	320	0	ENST00000262741.5:c.395C>T	p.Ser132Phe	p.S132F	ENST00000262741	NM_003629.3	132	tCc/tTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085797	16085797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	245	611	0	ENST00000281043.3:c.973C>T	p.Pro325Ser	p.P325S	ENST00000281043	NM_005378.4	325	Ccc/Tcc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298476	11298476	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	381	530	0	ENST00000361445.4:c.1985T>C	p.Val662Ala	p.V662A	ENST00000361445	NM_004958.3	662	gTt/gCt																																																																														
MPL	4352	MSKCC	GRCh37	1	43818302	43818302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	514	738	1	ENST00000372470.3:c.1767G>A	p.Met589Ile	p.M589I	ENST00000372470	NM_005373.2	589	atG/atA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725087	89725087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	33	108	0	ENST00000371953.3:c.1070C>T	p.Pro357Leu	p.P357L	ENST00000371953	NM_000314.4	357	cCa/cTa																																																																														
WT1	7490	MSKCC	GRCh37	11	32439144	32439144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	170	475	0	ENST00000332351.3:c.929A>G	p.Asn310Ser	p.N310S	ENST00000332351	NM_024426.4	310	aAc/aGc																																																																														
YAP1	10413	MSKCC	GRCh37	11	102033218	102033218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	293	537	0	ENST00000282441.5:c.604C>T	p.Pro202Ser	p.P202S	ENST00000282441	NM_001130145.2	202	Ccc/Tcc																																																																														
CBL	867	MSKCC	GRCh37	11	119149247	119149247	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	476	545	0	ENST00000264033.4:c.1255T>C	p.Cys419Arg	p.C419R	ENST00000264033	NM_005188.3	419	Tgc/Cgc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623604	28623604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	141	486	0	ENST00000241453.7:c.953C>T	p.Ser318Leu	p.S318L	ENST00000241453	NM_004119.2	318	tCa/tTa																																																																														
RAD51	5888	MSKCC	GRCh37	15	41023376	41023376	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	162	382	0	ENST00000267868.3:c.1020A>G	p.Ter340TrpextTer8	p.*340Wext*8	ENST00000267868	NM_002875.4	340	tgA/tgG																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576241	88576241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	252	562	0	ENST00000360948.2:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000360948	NM_001012338.2	478	Gcc/Acc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639564	3639564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	356	964	1	ENST00000294008.3:c.4075C>T	p.Pro1359Ser	p.P1359S	ENST00000294008	NM_032444.2	1359	Cca/Tca																																																																														
SLX4	84464	MSKCC	GRCh37	16	3651032	3651032	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	311	536	0	ENST00000294008.3:c.1111G>C	p.Val371Leu	p.V371L	ENST00000294008	NM_032444.2	371	Gtg/Ctg																																																																														
NF1	4763	MSKCC	GRCh37	17	29652855	29652859	+	frameshift_variant	Frame_Shift_Del	DEL	TCAAT	TCAAT	-			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	79	216	0	ENST00000358273.4:c.4853_4857del	p.Ile1618ArgfsTer2	p.I1618Rfs*2	ENST00000358273	NM_001042492.2	1618	aTCAAT/a																																																																														
CDK12	51755	MSKCC	GRCh37	17	37649081	37649083	+	missense_variant	Missense_Mutation	ONP	TTA	TTA	CAT			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	124	385	0	ENST00000447079.4:c.2186_2188delinsCAT	p.Ile729_Ile730delinsThrPhe	p.I729_I730delinsTF	ENST00000447079	NM_015083.1	729	aTTAtt/aCATtt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872593	37872593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	282	814	0	ENST00000269571.5:c.1553G>A	p.Gly518Glu	p.G518E	ENST00000269571		518	gGg/gAg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37882836	37882836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	241	762	1	ENST00000269571.5:c.2894G>T	p.Cys965Phe	p.C965F	ENST00000269571		965	tGt/tTt																																																																														
EZH1	2145	MSKCC	GRCh37	17	40857184	40857185	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	187	330	1	ENST00000428826.2:c.1856_1857delinsTT	p.Pro619Leu	p.P619L	ENST00000428826		619	cCC/cTT																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617720	39617720	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	106	318	0	ENST00000262039.4:c.1904T>A	p.Phe635Tyr	p.F635Y	ENST00000262039	NM_002647.2	635	tTt/tAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123764	11123764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	232	649	0	ENST00000344626.4:c.2414C>T	p.Pro805Leu	p.P805L	ENST00000344626	NM_003072.3	805	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272213	15272213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	269	619	0	ENST00000263388.2:c.6226G>A	p.Gly2076Arg	p.G2076R	ENST00000263388	NM_000435.2	2076	Ggg/Agg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954592	17954592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	317	789	0	ENST00000458235.1:c.302G>A	p.Arg101Lys	p.R101K	ENST00000458235	NM_000215.3	101	aGg/aAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220926	36220926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	163	445	0	ENST00000222270.7:c.4976T>A	p.Leu1659His	p.L1659H	ENST00000222270	NM_014727.1	1659	cTc/cAc																																																																														
AXL	558	MSKCC	GRCh37	19	41727836	41727836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	327	887	1	ENST00000301178.4:c.461C>A	p.Thr154Asn	p.T154N	ENST00000301178	NM_021913.4	154	aCc/aAc																																																																														
ERF	2077	MSKCC	GRCh37	19	42752765	42752765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	335	898	0	ENST00000222329.4:c.1499C>T	p.Pro500Leu	p.P500L	ENST00000222329	NM_006494.2	500	cCc/cTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42795736	42795736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	333	946	0	ENST00000575354.2:c.2725C>T	p.Pro909Ser	p.P909S	ENST00000575354	NM_015125.3	909	Ccg/Tcg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910370	50910370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	310	894	0	ENST00000440232.2:c.1625C>T	p.Pro542Leu	p.P542L	ENST00000440232	NM_002691.3	542	cCc/cTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918834	50918834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	339	903	0	ENST00000440232.2:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000440232	NM_002691.3	902	Gag/Aag																																																																														
ALK	238	MSKCC	GRCh37	2	29416427	29416427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	337	763	0	ENST00000389048.3:c.4526C>T	p.Ser1509Phe	p.S1509F	ENST00000389048	NM_004304.4	1509	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	29917802	29917802	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112782816		P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	306	817	0	ENST00000389048.3:c.866C>T	p.Ser289Phe	p.S289F	ENST00000389048	NM_004304.4	289	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589842	212589842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	229	506	0	ENST00000342788.4:c.700T>C	p.Cys234Arg	p.C234R	ENST00000342788	NM_005235.2	234	Tgt/Cgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727095	40727095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	259	638	1	ENST00000373198.4:c.3869C>T	p.Ser1290Phe	p.S1290F	ENST00000373198	NM_133170.3	1290	tCt/tTt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264907	46264907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	170	379	1	ENST00000371998.3:c.1777C>T	p.Leu593Phe	p.L593F	ENST00000371998		593	Ctc/Ttc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62324567	62324567	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1355	377	905	0	ENST00000508582.2:c.2995G>C	p.Gly999Arg	p.G999R	ENST00000508582		999	Ggc/Cgc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665354	182665354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	81	183	0	ENST00000292782.4:c.587G>A	p.Trp196Ter	p.W196*	ENST00000292782	NM_020640.2	196	tGg/tAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189526224	189526224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	321	800	0	ENST00000264731.3:c.488C>T	p.Pro163Leu	p.P163L	ENST00000264731	NM_003722.4	163	cCc/cTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807548	1807549	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	335	810	1	ENST00000260795.2:c.1717_1718delinsTT	p.Pro573Leu	p.P573L	ENST00000260795		573	CCg/TTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106193959	106193959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	147	244	0	ENST00000380013.4:c.4421C>T	p.Ala1474Val	p.A1474V	ENST00000380013	NM_001127208.2	1474	gCt/gTt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460555	149460555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	338	790	0	ENST00000286301.3:c.82C>T	p.Pro28Ser	p.P28S	ENST00000286301	NM_005211.3	28	Cct/Tct																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057075	180057075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	288	846	1	ENST00000261937.6:c.544G>A	p.Glu182Lys	p.E182K	ENST00000261937	NM_182925.4	182	Gag/Aag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188361	32188361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	283	813	0	ENST00000375023.3:c.980G>A	p.Arg327Lys	p.R327K	ENST00000375023	NM_004557.3	327	aGa/aAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120681	94120681	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	161	341	0	ENST00000369303.4:c.370A>G	p.Asn124Asp	p.N124D	ENST00000369303	NM_004440.3	124	Aat/Gat																																																																														
SESN1	27244	MSKCC	GRCh37	6	109315685	109315688	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	177	352	0	ENST00000436639.2:c.1097_1100del	p.Glu366ValfsTer57	p.E366Vfs*57	ENST00000436639	NM_014454.2	366	gAGAGt/gt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469871	157469871	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	273	695	1	ENST00000346085.5:c.2665C>T	p.Gln889Ter	p.Q889*	ENST00000346085	NM_020732.3	889	Cag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963978	2963978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	310	740	0	ENST00000396946.4:c.1829C>T	p.Ser610Phe	p.S610F	ENST00000396946	NM_032415.4	610	tCc/tTc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6045616	6045616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	114	215	0	ENST00000265849.7:c.70C>T	p.His24Tyr	p.H24Y	ENST00000265849	NM_000535.5	24	Cat/Tat																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468300	50468300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	266	662	0	ENST00000331340.3:c.1535G>A	p.Gly512Glu	p.G512E	ENST00000331340	NM_006060.4	512	gGg/gAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878754	151878754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	165	407	0	ENST00000262189.6:c.6191C>T	p.Ser2064Leu	p.S2064L	ENST00000262189	NM_170606.2	2064	tCa/tTa																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29196000	29196000	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	282	725	0	ENST00000240100.2:c.598del	p.Leu200PhefsTer27	p.L200Ffs*27	ENST00000240100	NM_001394.6	200	Ctt/tt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341712	8341712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	160	446	0	ENST00000356435.5:c.4928G>A	p.Gly1643Glu	p.G1643E	ENST00000356435		1643	gGa/gAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521522	8521522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	197	440	0	ENST00000356435.5:c.716C>T	p.Ser239Phe	p.S239F	ENST00000356435		239	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970899	21970899	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	277	685	0	ENST00000304494.5:c.457+2T>G		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970899	21970899	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	277	685	0	ENST00000304494.5:c.457+2T>G		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
TEK	7010	MSKCC	GRCh37	9	27185483	27185483	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	175	353	1	ENST00000380036.4:c.1183C>T	p.Pro395Ser	p.P395S	ENST00000380036	NM_000459.3	395	Cca/Tca																																																																														
ABL1	25	MSKCC	GRCh37	9	133755485	133755485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	280	624	0	ENST00000318560.5:c.1454C>T	p.Ser485Phe	p.S485F	ENST00000318560	NM_005157.4	485	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405110	139405125	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCAGTCGTCGATGT	CGGCAGTCGTCGATGT	-			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	313	846	0	ENST00000277541.6:c.2720_2735del	p.Asp907GlyfsTer267	p.D907Gfs*267	ENST00000277541	NM_017617.3	907	gACATCGACGACTGCCGg/gg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221614	36221615	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0047341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	316	861	0	ENST00000222270.7:c.5283_5284delinsT	p.Arg1762ValfsTer133	p.R1762Vfs*133	ENST00000222270	NM_014727.1	1761	tcCCgt/tcTgt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0047343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	141	931	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467828	50467828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	103	743	0	ENST00000331340.3:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000331340	NM_006060.4	355	Gcg/Acg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517413	157517413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	100	605	0	ENST00000346085.5:c.3977G>A	p.Arg1326His	p.R1326H	ENST00000346085	NM_020732.3	1326	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211270	36211270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	137	1034	1	ENST00000222270.7:c.1021C>T	p.Gln341Ter	p.Q341*	ENST00000222270	NM_014727.1	341	Caa/Taa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	147	971	0	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	116	695	5	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435199	49435199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	82	794	0	ENST00000301067.7:c.6354delC	p.Ala2119LeufsTer25	p.A2119Lfs*25	ENST00000301067	NM_003482.3	2118	ccC/cc																																																																														
SETD8	0	MSKCC	GRCh37	12	123879801	123879801	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150318048		P-0047343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	75	451	0	ENST00000330479.4:c.497C>T	p.Ala166Val	p.A166V	ENST00000330479	NM_020382.3	166	gCc/gTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690823	89690824	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACCG			P-0047343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	77	381	0	ENST00000371953.3:c.232_236dup	p.Lys80ProfsTer21	p.K80Pfs*21	ENST00000371953	NM_000314.4	77	gac/gaCACCGc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130637	29130638	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0047343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	99	645	0	ENST00000328354.6:c.72_73del	p.Val25TyrfsTer51	p.V25Yfs*51	ENST00000328354	NM_007194.3	24	agCGtt/agtt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591225	67591255	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTTTTCAAAACTGTTTTTCAGGTGGTTGA	CTCTTTTCAAAACTGTTTTTCAGGTGGTTGA	-			P-0047343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	29	373	0	ENST00000274335.5:c.1746-20_1756del		p.X582_splice	ENST00000274335		582																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149498321	149498321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	114	676	0	ENST00000261799.4:c.2893G>T	p.Gly965Cys	p.G965C	ENST00000261799	NM_002609.3	965	Ggt/Tgt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217230	11217230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	181	603	0	ENST00000361445.4:c.4448G>T	p.Cys1483Phe	p.C1483F	ENST00000361445	NM_004958.3	1483	tGc/tTc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115268931	115268931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	111	440	0	ENST00000438362.2:c.1679C>T	p.Ser560Phe	p.S560F	ENST00000438362	NM_001242891.1	560	tCt/tTt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805038	89805038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	217	783	0	ENST00000389301.3:c.4339G>A	p.Asp1447Asn	p.D1447N	ENST00000389301	NM_000135.2	1447	Gac/Aac																																																																														
STAT3	6774	MSKCC	GRCh37	17	40497588	40497588	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	240	586	0	ENST00000264657.5:c.361del	p.Thr121LeufsTer17	p.T121Lfs*17	ENST00000264657	NM_139276.2	121	Act/ct																																																																														
INSR	3643	MSKCC	GRCh37	19	7184360	7184360	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	248	654	0	ENST00000302850.5:c.941A>G	p.Glu314Gly	p.E314G	ENST00000302850	NM_000208.2	314	gAg/gGg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610581	52610581	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	57	348	0	ENST00000394830.3:c.3592del	p.Thr1198ProfsTer4	p.T1198Pfs*4	ENST00000394830	NM_018313.4	1198	Acc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099008	27099008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	94	459	0	ENST00000324856.7:c.3424C>T	p.Gln1142Ter	p.Q1142*	ENST00000324856	NM_006015.4	1142	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916640	178916666	+	inframe_deletion	In_Frame_Del	DEL	ACTGTGGGGCATCCACTTGATGCCCCC	ACTGTGGGGCATCCACTTGATGCCCCC	-			P-0034561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	93	203	0	ENST00000263967.3:c.28_54del	p.Leu10_Pro18del	p.L10_P18del	ENST00000263967	NM_006218.2	9	gaACTGTGGGGCATCCACTTGATGCCCCCa/gaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527703	157527703	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	219	460	0	ENST00000346085.5:c.5428C>T	p.Gln1810Ter	p.Q1810*	ENST00000346085	NM_020732.3	1810	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057766	27057766	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	391	672	0	ENST00000324856.7:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000324856	NM_006015.4	492	Cag/Tag																																																																														
KDR	3791	MSKCC	GRCh37	4	55955040	55955040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	70	349	0	ENST00000263923.4:c.3505C>G	p.Gln1169Glu	p.Q1169E	ENST00000263923	NM_002253.2	1169	Cag/Gag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373221	118373221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	36	343	1	ENST00000534358.1:c.6614C>T	p.Pro2205Leu	p.P2205L	ENST00000534358	NM_005933.3	2205	cCc/cTc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67569306	67569306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	60	287	0	ENST00000274335.5:c.423G>T	p.Lys141Asn	p.K141N	ENST00000274335		141	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0046331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	402	691	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950818	32950818	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	130	295	0	ENST00000380152.3:c.8644A>G	p.Lys2882Glu	p.K2882E	ENST00000380152		2882	Aaa/Gaa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30310116	30310116	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	14	51	0	ENST00000322652.5:c.1016A>G	p.Asp339Gly	p.D339G	ENST00000322652	NM_015355.2	339	gAt/gGt																																																																														
MED12	9968	MSKCC	GRCh37	X	70348289	70348289	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0046331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	283	528	0	ENST00000374080.3:c.3353A>G	p.Asp1118Gly	p.D1118G	ENST00000374080		1118	gAt/gGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	213	300	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	378	682	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	26	636	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	237	584	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																																																														
AXL	558	MSKCC	GRCh37	19	41727077	41727077	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35202236		P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	77	660	0	ENST00000301178.4:c.335C>T	p.Thr112Met	p.T112M	ENST00000301178	NM_021913.4	112	aCg/aTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075157	16075157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	35	274	0	ENST00000268712.3:c.395C>G	p.Pro132Arg	p.P132R	ENST00000268712	NM_006311.3	132	cCg/cGg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412575	63412575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	20	313	1	ENST00000330258.3:c.592G>A	p.Glu198Lys	p.E198K	ENST00000330258	NM_152424.3	198	Gag/Aag																																																																														
MED12	9968	MSKCC	GRCh37	X	70338683	70338683	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	60	285	0	ENST00000374080.3:c.79C>T	p.Gln27Ter	p.Q27*	ENST00000374080		27	Cag/Tag																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729693	162729693	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139577393		P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	67	489	0	ENST00000367921.3:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000367921	NM_006182.2	260	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023622	27023624	+	frameshift_variant	Frame_Shift_Del	DEL	CGG	CGG	GT			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	266	339	2	ENST00000324856.7:c.728_730delinsGT	p.Ala243GlyfsTer120	p.A243Gfs*120	ENST00000324856	NM_006015.4	243	gCGGcg/gGTcg																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166313	118166313	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	138	355	0	ENST00000369448.3:c.824del	p.Phe275SerfsTer34	p.F275Sfs*34	ENST00000369448	NM_017709.3	275	Ttc/tc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948773	71948773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	304	758	0	ENST00000298229.2:c.3485A>G	p.Tyr1162Cys	p.Y1162C	ENST00000298229	NM_001567.3	1162	tAt/tGt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245543	46245543	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	38	309	0	ENST00000334344.6:c.3638del	p.Pro1213GlnfsTer30	p.P1213Qfs*30	ENST00000334344	NM_152641.2	1213	Cca/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443940	49443940	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	427	668	0	ENST00000301067.7:c.3431del	p.Leu1144TrpfsTer20	p.L1144Wfs*20	ENST00000301067	NM_003482.3	1144	tTg/tg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111886101	111886101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	46	385	0	ENST00000341259.2:c.1723C>T	p.Leu575Phe	p.L575F	ENST00000341259	NM_005475.2	575	Ctc/Ttc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060712	38060712	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	927	834	0	ENST00000250448.2:c.1277A>C	p.Tyr426Ser	p.Y426S	ENST00000250448	NM_004496.3	426	tAc/tCc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614577	38614577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	342	443	0	ENST00000299084.4:c.343G>T	p.Gly115Cys	p.G115C	ENST00000299084	NM_152594.2	115	Ggt/Tgt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828795	3828795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	278	523	0	ENST00000262367.5:c.1847C>T	p.Pro616Leu	p.P616L	ENST00000262367	NM_004380.2	616	cCt/cTt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965950	18965951	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	73	642	0	ENST00000262803.5:c.1445_1446del	p.Val482AlafsTer68	p.V482Afs*68	ENST00000262803	NM_002911.3	481	acTGtg/actg																																																																														
AKT2	208	MSKCC	GRCh37	19	40740960	40740960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	324	733	0	ENST00000392038.2:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000392038	NM_001626.4	453	cCt/cTt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860620	45860620	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	382	753	0	ENST00000391945.4:c.1387C>A	p.Pro463Thr	p.P463T	ENST00000391945	NM_000400.3	463	Ccg/Acg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31389089	31389089	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	265	334	0	ENST00000328111.2:c.2002A>G	p.Thr668Ala	p.T668A	ENST00000328111	NM_006892.3	668	Aca/Gca																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458322	12458322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	514	526	0	ENST00000287820.6:c.939C>G	p.Cys313Trp	p.C313W	ENST00000287820	NM_015869.4	313	tgC/tgG																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440379	52440379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	270	473	1	ENST00000460680.1:c.673G>T	p.Asp225Tyr	p.D225Y	ENST00000460680	NM_004656.3	225	Gac/Tac																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442599	52442599	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	77	270	0	ENST00000460680.1:c.146T>A	p.Leu49Gln	p.L49Q	ENST00000460680	NM_004656.3	49	cTg/cAg																																																																														
KDR	3791	MSKCC	GRCh37	4	55955965	55955965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	31	316	1	ENST00000263923.4:c.3197G>A	p.Arg1066His	p.R1066H	ENST00000263923	NM_002253.2	1066	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332595	153332595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	50	341	0	ENST00000281708.4:c.361G>A	p.Glu121Lys	p.E121K	ENST00000281708	NM_033632.3	121	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332681	153332681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	33	351	0	ENST00000281708.4:c.275C>T	p.Ser92Leu	p.S92L	ENST00000281708	NM_033632.3	92	tCa/tTa																																																																														
IRF4	3662	MSKCC	GRCh37	6	393168	393169	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	57	398	0	ENST00000380956.4:c.16_17delinsAA	p.Gly6Asn	p.G6N	ENST00000380956	NM_001195286.1	6	GGc/AAc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87339212	87339212	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	28	411	0	ENST00000277120.3:c.794C>G	p.Ser265Cys	p.S265C	ENST00000277120		265	tCt/tGt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772082	135772082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	63	448	0	ENST00000298552.3:c.3035C>G	p.Ser1012Cys	p.S1012C	ENST00000298552	NM_001162426.1	1012	tCt/tGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922734	44922759	+	frameshift_variant	Frame_Shift_Del	DEL	CACTGCCTACAAACTCAGTCTCTGGC	CACTGCCTACAAACTCAGTCTCTGGC	-			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	287	187	0	ENST00000377967.4:c.1597_1622del	p.Leu533AlafsTer11	p.L533Afs*11	ENST00000377967	NM_021140.2	532	tCACTGCCTACAAACTCAGTCTCTGGC/t																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575520	64575524	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCA	TGGCA	C			P-0047139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	340	517	0	ENST00000337652.1:c.508_512delinsG	p.Cys170GlyfsTer19	p.C170Gfs*19	ENST00000337652	NM_130803.2	170	TGCCAg/Gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	736	890	0	ENST00000269305.4:c.392A>G	p.Asn131Ser	p.N131S	ENST00000269305	NM_001126112.2	131	aAc/aGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100172	157100172	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	10	94	0	ENST00000346085.5:c.1114delC	p.Arg372GlyfsTer7	p.R372Gfs*7	ENST00000346085	NM_020732.3	370	tCc/tc																																																																														
CBFB	865	MSKCC	GRCh37	16	67063628	67063628	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0047209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	271	378	0	ENST00000412916.2:c.79-2A>T		p.X27_splice	ENST00000412916		27																																																																															
AR	367	MSKCC	GRCh37	X	66943542	66943543	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0047211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	69	177	0	ENST00000374690.3:c.2622_2623delinsCT	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	874	ctGCat/ctCTat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	185	542	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	409	612	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	25	286	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	47	462	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112177968	112177968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	31	230	0	ENST00000257430.4:c.6677G>A	p.Arg2226Gln	p.R2226Q	ENST00000257430	NM_000038.5	2226	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151850009	151850009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	21	233	0	ENST00000262189.6:c.12307G>A	p.Asp4103Asn	p.D4103N	ENST00000262189	NM_170606.2	4103	Gac/Aac																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115450	115115450	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	136	354	0	ENST00000257566.3:c.876A>T	p.Leu292Phe	p.L292F	ENST00000257566	NM_016569.3	292	ttA/ttT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508629	106508629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	40	414	0	ENST00000359195.3:c.623C>A	p.Pro208Gln	p.P208Q	ENST00000359195	NM_002649.2	208	cCg/cAg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118934	70118934	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	84	628	0	ENST00000245479.2:c.506A>C	p.His169Pro	p.H169P	ENST00000245479	NM_000346.3	169	cAc/cCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	15	265	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0047213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	45	323	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	451	551	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741466	17741466	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	246	724	0	ENST00000250003.3:c.137T>G	p.Leu46Arg	p.L46R	ENST00000250003	NM_002478.4	46	cTg/cGg																																																																														
MGA	23269	MSKCC	GRCh37	15	42059390	42059390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	73	312	0	ENST00000219905.7:c.9110G>A	p.Gly3037Asp	p.G3037D	ENST00000219905	NM_001164273.1	3037	gGc/gAc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39239392	39239392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	21	402	0	ENST00000402219.2:c.2265G>T	p.Gln755His	p.Q755H	ENST00000402219	NM_005633.3	755	caG/caT																																																																														
ATR	545	MSKCC	GRCh37	3	142281210	142281210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	40	274	0	ENST00000350721.4:c.1034C>G	p.Ala345Gly	p.A345G	ENST00000350721	NM_001184.3	345	gCt/gGt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479784	67479784	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	235	631	0	ENST00000327367.4:c.1091A>G	p.Tyr364Cys	p.Y364C	ENST00000327367	NM_005902.3	364	tAc/tGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29653051	29653051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	157	287	0	ENST00000358273.4:c.5049C>A	p.Asn1683Lys	p.N1683K	ENST00000358273	NM_001042492.2	1683	aaC/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	152	592	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	185	683	0	ENST00000301067.7:c.15536G>A	p.Arg5179His	p.R5179H	ENST00000301067	NM_003482.3	5179	cGt/cAt																																																																														
RAF1	5894	MSKCC	GRCh37	3	12660033	12660033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	40	380	0	ENST00000251849.4:c.188C>G	p.Pro63Arg	p.P63R	ENST00000251849	NM_002880.3	63	cCg/cGg																																																																														
ATR	545	MSKCC	GRCh37	3	142184028	142184028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	30	309	0	ENST00000350721.4:c.6952G>C	p.Asp2318His	p.D2318H	ENST00000350721	NM_001184.3	2318	Gat/Cat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55143603	55143603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	76	348	0	ENST00000257290.5:c.1835C>G	p.Ala612Gly	p.A612G	ENST00000257290	NM_006206.4	612	gCc/gGc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672779	30672779	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1218	67	699	0	ENST00000376406.3:c.4181del	p.Gly1394GlufsTer49	p.G1394Efs*49	ENST00000376406	NM_014641.2	1394	gGa/ga																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673271	30673271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	62	558	0	ENST00000376406.3:c.3689G>C	p.Gly1230Ala	p.G1230A	ENST00000376406	NM_014641.2	1230	gGa/gCa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324916	31324916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1955	262	1064	0	ENST00000412585.2:c.20G>T	p.Arg7Leu	p.R7L	ENST00000412585	NM_005514.6	7	cGa/cTa																																																																														
RXRA	6256	MSKCC	GRCh37	9	137309006	137309006	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	78	786	1	ENST00000481739.1:c.613G>T	p.Val205Leu	p.V205L	ENST00000481739	NM_002957.4	205	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	77	462	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0047230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	39	211	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	30	285	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690810	89690813	+	frameshift_variant	Frame_Shift_Del	DEL	GAAA	GAAA	-			P-0047230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	28	182	0	ENST00000371953.3:c.219_222delAAGA	p.Glu73AspfsTer25	p.E73Dfs*25	ENST00000371953	NM_000314.4	73	GAAAga/ga																																																																														
AR	367	MSKCC	GRCh37	X	66766050	66766050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	52	667	0	ENST00000374690.3:c.1062C>A	p.Asp354Glu	p.D354E	ENST00000374690	NM_000044.3	354	gaC/gaA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	38	472	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	79	651	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	90	697	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287229	46287229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	46	346	0	ENST00000334344.6:c.5174C>G	p.Ser1725Ter	p.S1725*	ENST00000334344	NM_152641.2	1725	tCa/tGa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135385	30135385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	45	322	0	ENST00000331968.5:c.433C>T	p.Arg145Cys	p.R145C	ENST00000331968	NM_002742.2	145	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524687	187524687	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	120	756	1	ENST00000441802.2:c.10993C>T	p.Arg3665Ter	p.R3665*	ENST00000441802	NM_005245.3	3665	Cga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748128	43748128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	58	500	0	ENST00000382044.4:c.2678C>G	p.Ser893Cys	p.S893C	ENST00000382044	NM_001141980.1	893	tCt/tGt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348650	89348650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	91	839	0	ENST00000301030.4:c.4300G>A	p.Glu1434Lys	p.E1434K	ENST00000301030	NM_001256183.1	1434	Gag/Aag																																																																														
AR	367	MSKCC	GRCh37	X	66765400	66765400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	42	809	1	ENST00000374690.3:c.412G>A	p.Ala138Thr	p.A138T	ENST00000374690	NM_000044.3	138	Gcc/Acc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38189097	38189097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	139	374	0	ENST00000317025.8:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000317025	NM_023034.1	306	cGa/cAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245486	46245486	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	54	297	0	ENST00000334344.6:c.3580C>T	p.Gln1194Ter	p.Q1194*	ENST00000334344	NM_152641.2	1194	Cag/Tag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347462	89347462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	103	800	0	ENST00000301030.4:c.5488G>A	p.Glu1830Lys	p.E1830K	ENST00000301030	NM_001256183.1	1830	Gaa/Aaa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348125	89348125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	102	877	0	ENST00000301030.4:c.4825G>A	p.Glu1609Lys	p.E1609K	ENST00000301030	NM_001256183.1	1609	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348541	89348541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	113	923	0	ENST00000301030.4:c.4409G>C	p.Arg1470Thr	p.R1470T	ENST00000301030	NM_001256183.1	1470	aGa/aCa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349048	89349048	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	78	875	0	ENST00000301030.4:c.3902G>C	p.Ser1301Thr	p.S1301T	ENST00000301030	NM_001256183.1	1301	aGc/aCc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349232	89349232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	122	925	1	ENST00000301030.4:c.3718G>A	p.Glu1240Lys	p.E1240K	ENST00000301030	NM_001256183.1	1240	Gag/Aag																																																																														
FAM175A	0	MSKCC	GRCh37	4	84383714	84383714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	83	505	0	ENST00000321945.7:c.1138G>C	p.Asp380His	p.D380H	ENST00000321945	NM_139076.2	380	Gat/Cat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249486	153249487	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	82	425	0	ENST00000281708.4:c.1291_1292del	p.Asp431GlnfsTer5	p.D431Qfs*5	ENST00000281708	NM_033632.3	431	GAc/c																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31449389	31449389	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	23	343	0	ENST00000344624.3:c.2820A>T	p.Lys940Asn	p.K940N	ENST00000344624		940	aaA/aaT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680431	30680431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	61	534	0	ENST00000376406.3:c.1288G>A	p.Asp430Asn	p.D430N	ENST00000376406	NM_014641.2	430	Gat/Aat																																																																														
RAD21	5885	MSKCC	GRCh37	8	117866562	117866562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	57	395	0	ENST00000297338.2:c.1083G>C	p.Met361Ile	p.M361I	ENST00000297338	NM_006265.2	361	atG/atC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	144	311	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	60	525	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542201	187542201	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189523191		P-0047233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	67	399	0	ENST00000441802.2:c.5539G>A	p.Val1847Ile	p.V1847I	ENST00000441802	NM_005245.3	1847	Gtc/Atc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212252718	212252718	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0047233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	18	121	0	ENST00000342788.4:c.3136-1G>C		p.X1046_splice	ENST00000342788	NM_005235.2	1046																																																																															
APC	324	MSKCC	GRCh37	5	112173798	112173798	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	174	254	0	ENST00000257430.4:c.2507del	p.Ser836TyrfsTer6	p.S836Yfs*6	ENST00000257430	NM_000038.5	836	tCa/ta																																																																														
FAT1	2195	MSKCC	GRCh37	4	187531007	187531007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	86	321	0	ENST00000441802.2:c.10016C>A	p.Thr3339Asn	p.T3339N	ENST00000441802	NM_005245.3	3339	aCc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	125	654	0	ENST00000269305.4:c.857A>C	p.Glu286Ala	p.E286A	ENST00000269305	NM_001126112.2	286	gAa/gCa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94918424	94918424	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	20	232	0	ENST00000536441.1:c.758T>G	p.Phe253Cys	p.F253C	ENST00000536441	NM_144665.3	253	tTt/tGt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106524705	106524705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	10	162	0	ENST00000359195.3:c.2866G>C	p.Glu956Gln	p.E956Q	ENST00000359195	NM_002649.2	956	Gag/Cag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020501	69020501	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	11	457	0	ENST00000288368.4:c.2873T>A	p.Phe958Tyr	p.F958Y	ENST00000288368	NM_024870.2	958	tTt/tAt																																																																														
ARAF	369	MSKCC	GRCh37	X	47424399	47424399	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	21	574	0	ENST00000377045.4:c.319T>G	p.Phe107Val	p.F107V	ENST00000377045	NM_001654.4	107	Ttc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	97	292	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	385	760	0	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	21	143	0	ENST00000257430.4:c.3929dup	p.Ile1311AspfsTer4	p.I1311Dfs*4	ENST00000257430	NM_000038.5	1309	gaa/gAaa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912186	114912186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	187	411	0	ENST00000543371.1:c.1256C>T	p.Ala419Val	p.A419V	ENST00000543371	NM_001198531.1	419	gCg/gTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120449	70120450	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	364	800	0	ENST00000245479.2:c.1452_1453dup	p.Gly485ValfsTer39	p.G485Vfs*39	ENST00000245479	NM_000346.3	484	tct/tcTGt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1646426	1646426	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	222	501	0	ENST00000344749.5:c.73A>G	p.Met25Val	p.M25V	ENST00000344749	NM_001136139.2	25	Atg/Gtg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221033	5221033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	187	501	2	ENST00000357368.4:c.3433G>A	p.Gly1145Ser	p.G1145S	ENST00000357368	NM_002850.3	1145	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112173840	112173847	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGTTTG	GAAGTTTG	-			P-0047239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	92	247	0	ENST00000257430.4:c.2551_2558del	p.Ser851GlufsTer58	p.S851Efs*58	ENST00000257430	NM_000038.5	850	aGAAGTTTG/a																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	43	199	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
STK11	6794	MSKCC	GRCh37	19	1207058	1207069	+	inframe_deletion	In_Frame_Del	DEL	ACCTGATGGGGG	ACCTGATGGGGG	-			P-0047241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	93	719	0	ENST00000326873.7:c.151_162del	p.Met51_Leu54del	p.M51_L54del	ENST00000326873	NM_000455.4	49	tACCTGATGGGGGac/tac																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439886	51439886	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	37	274	0	ENST00000262662.1:c.451G>T	p.Glu151Ter	p.E151*	ENST00000262662		151	Gag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211546	46211559	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAAGTGGACTTT	ATGAAGTGGACTTT	-			P-0047241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	68	176	0	ENST00000334344.6:c.512_525del	p.Asn171SerfsTer3	p.N171Sfs*3	ENST00000334344	NM_152641.2	171	aATGAAGTGGACTTT/a																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	110	445	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	167	324	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099309	4099309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	263	1096	2	ENST00000262948.5:c.809C>T	p.Pro270Leu	p.P270L	ENST00000262948	NM_030662.3	270	cCc/cTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5211622	5211622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	127	453	0	ENST00000357368.4:c.5213C>T	p.Ala1738Val	p.A1738V	ENST00000357368	NM_002850.3	1738	gCc/gTc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89869695	89869695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	128	492	0	ENST00000389301.3:c.764G>A	p.Arg255Lys	p.R255K	ENST00000389301	NM_000135.2	255	aGa/aAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058575	69058575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	63	498	0	ENST00000288368.4:c.4219C>T	p.Leu1407Phe	p.L1407F	ENST00000288368	NM_024870.2	1407	Ctt/Ttt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974393	93974393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	35	285	0	ENST00000369303.4:c.1661C>T	p.Pro554Leu	p.P554L	ENST00000369303	NM_004440.3	554	cCt/cTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435269	18435269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	41	262	0	ENST00000266497.5:c.254C>T	p.Ser85Phe	p.S85F	ENST00000266497		85	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287412	46287412	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	32	260	0	ENST00000334344.6:c.5272-1G>A		p.X1758_splice	ENST00000334344	NM_152641.2	1758																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445335	49445335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	303	1029	1	ENST00000301067.7:c.2131C>T	p.Pro711Ser	p.P711S	ENST00000301067	NM_003482.3	711	Ccg/Tcg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117369	115117369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	57	224	0	ENST00000257566.3:c.805C>T	p.Arg269Trp	p.R269W	ENST00000257566	NM_016569.3	269	Cgg/Tgg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524577	103524577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	28	192	0	ENST00000355739.4:c.2708C>T	p.Pro903Leu	p.P903L	ENST00000355739	NM_000123.3	903	cCa/cTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483853	88483853	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	519	585	0	ENST00000360948.2:c.1716+1G>A		p.X572_splice	ENST00000360948	NM_001012338.2	572																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669553	88669553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	63	332	0	ENST00000360948.2:c.1345C>T	p.Leu449Phe	p.L449F	ENST00000360948	NM_001012338.2	449	Ctc/Ttc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829776	72829776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	163	630	0	ENST00000268489.5:c.6805G>A	p.Asp2269Asn	p.D2269N	ENST00000268489	NM_006885.3	2269	Gat/Aat																																																																														
ALK	238	MSKCC	GRCh37	2	29456462	29456463	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	140	667	0	ENST00000389048.3:c.2455_2456delinsAA	p.Gly819Lys	p.G819K	ENST00000389048	NM_004304.4	819	GGa/AAa																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309777	30309778	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	144	551	0	ENST00000307677.4:c.244_245delinsTT	p.Pro82Phe	p.P82F	ENST00000307677	NM_138578.1	82	CCc/TTc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655229	45655229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	195	694	0	ENST00000407780.3:c.623C>T	p.Thr208Ile	p.T208I	ENST00000407780	NM_001283052.1	208	aCc/aTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41545921	41545921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	216	603	0	ENST00000263253.7:c.2536C>T	p.Pro846Ser	p.P846S	ENST00000263253	NM_001429.3	846	Ccc/Tcc																																																																														
FAM175A	0	MSKCC	GRCh37	4	84406201	84406202	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	176	484	2	ENST00000321945.7:c.24_25delinsAA	p.Val9Met	p.V9M	ENST00000321945	NM_139076.2	8	gcGGtg/gcAAtg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211513	46211516	+	frameshift_variant	Frame_Shift_Del	DEL	AATT	AATT	TA			P-0047254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	29	204	1	ENST00000334344.6:c.479_482delinsTA	p.Lys160IlefsTer12	p.K160Ifs*12	ENST00000334344	NM_152641.2	160	aAATTg/aTAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	19	411	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	136	247	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	21	280	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	27	422	0	ENST00000263967.3:c.1636C>G	p.Gln546Glu	p.Q546E	ENST00000263967	NM_006218.2	546	Cag/Gag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717715	89717716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1393832338		P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	21	328	1	ENST00000371953.3:c.741dup	p.Pro248ThrfsTer5	p.P248Tfs*5	ENST00000371953	NM_000314.4	247	tta/ttAa																																																																														
APC	324	MSKCC	GRCh37	5	112175789	112175789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	61	156	0	ENST00000257430.4:c.4501del	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1500	Ttt/tt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717743	89717744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	22	283	0	ENST00000371953.3:c.770dup	p.Phe258LeufsTer40	p.F258Lfs*40	ENST00000371953	NM_000314.4	256	-/T																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632753	23632753	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	14	341	0	ENST00000261584.4:c.3043A>T	p.Thr1015Ser	p.T1015S	ENST00000261584	NM_024675.3	1015	Act/Tct																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371774	45371774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	12	270	0	ENST00000262160.6:c.1217A>G	p.Tyr406Cys	p.Y406C	ENST00000262160	NM_005901.5	406	tAt/tGt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395691	45395691	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	15	251	0	ENST00000262160.6:c.443del	p.Asn148ThrfsTer15	p.N148Tfs*15	ENST00000262160	NM_005901.5	148	aAc/ac																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210421	2210421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	114	826	0	ENST00000398665.3:c.1028G>T	p.Arg343Leu	p.R343L	ENST00000398665	NM_032482.2	343	cGc/cTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10254554	10254554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	59	494	0	ENST00000340748.4:c.2956G>C	p.Asp986His	p.D986H	ENST00000340748		986	Gat/Cat																																																																														
APC	324	MSKCC	GRCh37	5	112137045	112137045	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	109	229	0	ENST00000257430.4:c.799G>T	p.Gly267Ter	p.G267*	ENST00000257430	NM_000038.5	267	Gga/Tga																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250590	26250590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	139	540	0	ENST00000446824.2:c.244G>T	p.Asp82Tyr	p.D82Y	ENST00000446824	NM_021018.2	82	Gac/Tac																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738850	145738850	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	89	919	0	ENST00000428558.2:c.2215A>G	p.Thr739Ala	p.T739A	ENST00000428558	NM_004260.3	739	Acc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577525	7577527	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0047259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	252	543	0	ENST00000269305.4:c.754_756del	p.Leu252del	p.L252del	ENST00000269305	NM_001126112.2	252	CTC/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0047260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	25	309	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	44	700	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360929	118360929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	38	463	0	ENST00000534358.1:c.4661C>T	p.Ser1554Leu	p.S1554L	ENST00000534358	NM_005933.3	1554	tCa/tTa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027060	71027084	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGGGGCCTTGGGTGACGGGAGT	CAGAGGGGCCTTGGGTGACGGGAGT	-			P-0016961-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	78	265	0	ENST00000318789.4:c.1243_1267del	p.Thr415SerfsTer51	p.T415Sfs*51	ENST00000318789	NM_032682.5	415	ACTCCCGTCACCCAAGGCCCCTCTGtc/tc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018869-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			331	169	457	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275842	38275842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018869-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			252	346	625	0	ENST00000425967.3:c.1427G>A	p.Arg476Gln	p.R476Q	ENST00000425967	NM_001174067.1	476	cGg/cAg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112287	115112287	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018869-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			13	18	55	0	ENST00000257566.3:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000257566	NM_016569.3	485	Cag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68849628	68849628	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018869-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			223	241	616	0	ENST00000261769.5:c.1531C>T	p.Gln511Ter	p.Q511*	ENST00000261769	NM_004360.3	511	Cag/Tag																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125513702	125513702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018869-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			217	81	291	0	ENST00000428830.2:c.830G>A	p.Arg277Gln	p.R277Q	ENST00000428830	NM_001114121.2	277	cGa/cAa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138855	64138855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018869-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			270	78	438	0	ENST00000334205.4:c.2222C>A	p.Ser741Tyr	p.S741Y	ENST00000334205	NM_003942.2	741	tCc/tAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	298	1004	0	ENST00000344626.4:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000344626	NM_003072.3	882	Gaa/Aaa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894916	101894916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	107	363	0	ENST00000374994.4:c.469C>T	p.Arg157Ter	p.R157*	ENST00000374994	NM_004612.2	157	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0046476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			705	141	686	0	ENST00000269571.5:c.2263_2264delTTinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610131	10610131	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			705	232	915	0	ENST00000171111.5:c.579G>C	p.Gln193His	p.Q193H	ENST00000171111	NM_203500.1	193	caG/caC																																																																														
APC	324	MSKCC	GRCh37	5	112164587	112164587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	60	250	0	ENST00000257430.4:c.1661G>A	p.Arg554Gln	p.R554Q	ENST00000257430	NM_000038.5	554	cGa/cAa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610076	10610076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	106	811	0	ENST00000171111.5:c.634G>A	p.Gly212Arg	p.G212R	ENST00000171111	NM_203500.1	212	Ggg/Agg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610334	10610334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			825	339	1100	0	ENST00000171111.5:c.376G>A	p.Glu126Lys	p.E126K	ENST00000171111	NM_203500.1	126	Gag/Aag																																																																														
CYLD	1540	MSKCC	GRCh37	16	50827523	50827523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	139	426	1	ENST00000398568.2:c.2408C>T	p.Pro803Leu	p.P803L	ENST00000398568	NM_001042412.1	803	cCg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101179	41101179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			793	190	773	0	ENST00000373198.4:c.1177G>T	p.Val393Leu	p.V393L	ENST00000373198	NM_133170.3	393	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	116	613	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	373	539	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621875	1621875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	77	653	0	ENST00000344749.5:c.917G>A	p.Ser306Asn	p.S306N	ENST00000344749	NM_001136139.2	306	aGc/aAc																																																																														
CASP8	841	MSKCC	GRCh37	2	202136330	202136330	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	93	330	0	ENST00000358485.4:c.574del	p.Leu192TrpfsTer5	p.L192Wfs*5	ENST00000358485	NM_001080125.1	192	Ctg/tg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	376	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	262	943	0	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG																																																																														
TET2	54790	MSKCC	GRCh37	4	106182985	106182998	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CCTGATGCATATAA	CCTGATGCATATAA	TAG			P-0046950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	65	273	0	ENST00000380013.4:c.4024_4037delinsTAG	p.Pro1342Ter	p.P1342*	ENST00000380013	NM_001127208.2	1342	CCTGATGCATATAAt/TAGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3	24	751	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974771	21974771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	27	351	0	ENST00000304494.5:c.56C>G	p.Ala19Gly	p.A19G	ENST00000304494	NM_000077.4	19	gCc/gGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974771	21974771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	27	351	0	ENST00000304494.5:c.56C>G	p.Ala19Gly	p.A19G	ENST00000304494	NM_000077.4	19	gCc/gGc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711017	114711018	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	59	327	0	ENST00000543371.1:c.244dup	p.Ser82LysfsTer15	p.S82Kfs*15	ENST00000543371	NM_001198531.1	81	gaa/gAaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256200	41256200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	16	553	0	ENST00000357654.3:c.380G>T	p.Ser127Ile	p.S127I	ENST00000357654	NM_007294.3	127	aGt/aTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256210	41256210	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	14	512	0	ENST00000357654.3:c.370A>G	p.Ile124Val	p.I124V	ENST00000357654	NM_007294.3	124	Atc/Gtc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190660664	190660664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	13	343	0	ENST00000441310.2:c.302G>A	p.Cys101Tyr	p.C101Y	ENST00000441310	NM_000534.4	101	tGt/tAt																																																																														
SRC	6714	MSKCC	GRCh37	20	36031284	36031284	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	55	603	1	ENST00000358208.4:c.1402+1G>A		p.X468_splice	ENST00000358208		468																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528313	157528313	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	42	859	0	ENST00000346085.5:c.6038G>A	p.Trp2013Ter	p.W2013*	ENST00000346085	NM_020732.3	2013	tGg/tAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459535	50459535	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	21	307	0	ENST00000331340.3:c.824A>T	p.Lys275Met	p.K275M	ENST00000331340	NM_006060.4	275	aAg/aTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146093	38146093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	45	761	0	ENST00000317025.8:c.3413G>A	p.Cys1138Tyr	p.C1138Y	ENST00000317025	NM_023034.1	1138	tGc/tAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911543	39911543	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	77	617	0	ENST00000378444.4:c.5087A>C	p.Glu1696Ala	p.E1696A	ENST00000378444	NM_001123385.1	1696	gAa/gCa																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	11	262	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870324	155870324	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	112	377	0	ENST00000368323.3:c.515A>T	p.Asp172Val	p.D172V	ENST00000368323	NM_006912.5	172	gAt/gTt																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201952	102201952	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	12	166	0	ENST00000263464.3:c.1304del	p.Ala435GlufsTer12	p.A435Efs*12	ENST00000263464	NM_001165.4	435	gCa/ga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352567	118352567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	72	415	0	ENST00000534358.1:c.3772A>G	p.Ser1258Gly	p.S1258G	ENST00000534358	NM_005933.3	1258	Agt/Ggt																																																																														
POLE	5426	MSKCC	GRCh37	12	133210829	133210829	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	113	648	0	ENST00000320574.5:c.5947T>A	p.Leu1983Met	p.L1983M	ENST00000320574	NM_006231.2	1983	Ttg/Atg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138122	2138122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	140	845	0	ENST00000219476.3:c.5142G>T	p.Gln1714His	p.Q1714H	ENST00000219476	NM_000548.3	1714	caG/caT																																																																														
CYLD	1540	MSKCC	GRCh37	16	50815160	50815160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	76	324	0	ENST00000398568.2:c.1513G>A	p.Asp505Asn	p.D505N	ENST00000398568	NM_001042412.1	505	Gat/Aat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346978	89346978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	88	544	0	ENST00000301030.4:c.5972C>G	p.Pro1991Arg	p.P1991R	ENST00000301030	NM_001256183.1	1991	cCa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577113	+	inframe_deletion	In_Frame_Del	DEL	CGCCGGTCTCTCCCAGGACAGGCA	CGCCGGTCTCTCCCAGGACAGGCA	-			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	134	687	0	ENST00000269305.4:c.825_848del	p.Ala276_Arg283del	p.A276_R283del	ENST00000269305	NM_001126112.2	275	tgTGCCTGTCCTGGGAGAGACCGGCGc/tgc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696742	47696742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	66	214	0	ENST00000347630.2:c.206T>C	p.Leu69Ser	p.L69S	ENST00000347630	NM_001007230.1	69	tTg/tCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281491	15281491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	112	654	0	ENST00000263388.2:c.4882G>T	p.Asp1628Tyr	p.D1628Y	ENST00000263388	NM_000435.2	1628	Gac/Tac																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213166	39213166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	277	846	1	ENST00000402219.2:c.3801C>A	p.His1267Gln	p.H1267Q	ENST00000402219	NM_005633.3	1267	caC/caA																																																																														
ERG	2078	MSKCC	GRCh37	21	39755409	39755409	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	106	531	0	ENST00000288319.7:c.1356C>A	p.Tyr452Ter	p.Y452*	ENST00000288319	NM_182918.3	452	taC/taA																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978658	70978658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	138	521	0	ENST00000276594.2:c.995G>T	p.Arg332Leu	p.R332L	ENST00000276594	NM_024504.3	332	cGc/cTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409988	63409988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	103	257	0	ENST00000330258.3:c.3179G>C	p.Cys1060Ser	p.C1060S	ENST00000330258	NM_152424.3	1060	tGc/tCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916947	178916952	+	inframe_deletion	In_Frame_Del	DEL	ATCCTC	ATCCTC	-			P-0046990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	72	430	0	ENST00000263967.3:c.335_340delTCCTCA	p.Ile112_Leu113del	p.I112_L113del	ENST00000263967	NM_006218.2	112	ATCCTC/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	515	754	1	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																																																														
MGA	23269	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	256	527	1	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943628	9943628	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	217	754	0	ENST00000330684.3:c.1313A>C	p.Lys438Thr	p.K438T	ENST00000330684	NM_001134407.1	438	aAg/aCg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243809332	243809332	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	109	371	0	ENST00000263826.5:c.292T>C	p.Trp98Arg	p.W98R	ENST00000263826	NM_005465.4	98	Tgg/Cgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133210905	133210905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1255	235	856	0	ENST00000320574.5:c.5871G>T	p.Glu1957Asp	p.E1957D	ENST00000320574	NM_006231.2	1957	gaG/gaT																																																																														
RARA	5914	MSKCC	GRCh37	17	38506073	38506073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2969	199	744	0	ENST00000254066.5:c.365A>G	p.Tyr122Cys	p.Y122C	ENST00000254066	NM_000964.3	122	tAc/tGc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39728814	39728814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	97	390	0	ENST00000361337.2:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000361337	NM_003286.2	365	gGc/gAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138681	55138698	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAAGAAGTATGGAAAAC	TTAAGAAGTATGGAAAAC	-			P-0046990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	120	417	0	ENST00000257290.5:c.1358_1364+11del		p.X453_splice	ENST00000257290	NM_006206.4	453																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369182	118369182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	137	415	0	ENST00000534358.1:c.5900G>T	p.Cys1967Phe	p.C1967F	ENST00000534358	NM_005933.3	1967	tGt/tTt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061139	38061198	+	inframe_deletion	In_Frame_Del	DEL	CCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCT	CCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCT	-			P-0046991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	229	463	2	ENST00000250448.2:c.791_850del	p.Lys264_Gly284delinsSer	p.K264_G284delinsS	ENST00000250448	NM_004496.3	264	aAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGgc/agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046992-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	271	671	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0046992-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			136	12	439	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0046992-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			78	21	297	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046992-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			131	70	298	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	GA			P-0046992-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	93	543	0	ENST00000256078.4:c.182_183delinsTC	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTC																																																																														
TP53	7157	MSKCC	GRCh37	17	7579346	7579348	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs764486868		P-0046993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	699	949	0	ENST00000269305.4:c.339_341del	p.Phe113del	p.F113del	ENST00000269305	NM_001126112.2	113	ttCTTg/ttg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061352	38061352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	139	1023	1	ENST00000250448.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000250448	NM_004496.3	213	Cgc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76939094	76939114	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCACTGCTGCCATCCCCTT	TTCCACTGCTGCCATCCCCTT	GG			P-0046993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	109	607	2	ENST00000373344.5:c.1634_1654delinsCC	p.Gln545ProfsTer11	p.Q545Pfs*11	ENST00000373344	NM_000489.3	545	cAAGGGGATGGCAGCAGTGGAAct/cCCct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1442	80	729	0	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604784	48604807	+	inframe_deletion	In_Frame_Del	DEL	CTAGACGAAGTACTTCATACCATG	CTAGACGAAGTACTTCATACCATG	-			P-0046994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	27	307	0	ENST00000342988.3:c.1607_1630del	p.Leu536_Met543del	p.L536_M543del	ENST00000342988	NM_005359.5	536	CTAGACGAAGTACTTCATACCATG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7579440	7579440	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	559	1133	0	ENST00000269305.4:c.247delG	p.Ala83ArgfsTer40	p.A83Rfs*40	ENST00000269305	NM_001126112.2	83	Gcg/cg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936266	78936266	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs142332444		P-0046995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	416	901	0	ENST00000306801.3:c.3698A>G	p.Asn1233Ser	p.N1233S	ENST00000306801	NM_020761.2	1233	aAt/aGt																																																																														
RAF1	5894	MSKCC	GRCh37	3	12632423	12632423	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	474	879	0	ENST00000251849.4:c.1244A>G	p.Asp415Gly	p.D415G	ENST00000251849	NM_002880.3	415	gAc/gGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245373	153245373	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	223	273	0	ENST00000281708.4:c.1818G>A	p.Trp606Ter	p.W606*	ENST00000281708	NM_033632.3	606	tgG/tgA																																																																														
FLT4	2324	MSKCC	GRCh37	5	180055948	180055948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	538	1316	3	ENST00000261937.6:c.1037C>T	p.Thr346Met	p.T346M	ENST00000261937	NM_182925.4	346	aCg/aTg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730008	41730008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	414	833	0	ENST00000242208.4:c.521G>A	p.Arg174His	p.R174H	ENST00000242208	NM_002192.2	174	cGc/cAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	186	209	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194543	29194543	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0046995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	553	1324	0	ENST00000240100.2:c.1185G>C	p.Ter395TyrextTer16	p.*395Yext*16	ENST00000240100	NM_001394.6	395	taG/taC																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18280068	18280083	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCCGGGCCCCGGC	CGCCCCGGGCCCCGGC	-			P-0046995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	264	329	0	ENST00000222254.8:c.2152_2167del	p.Ala718ArgfsTer151	p.A718Rfs*151	ENST00000222254	NM_005027.3	717	cgCGCCCCGGGCCCCGGC/cg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	248	854	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130235	2130235	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1252	188	1247	0	ENST00000219476.3:c.3467C>G	p.Pro1156Arg	p.P1156R	ENST00000219476	NM_000548.3	1156	cCa/cGa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288415	15288415	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	89	802	0	ENST00000263388.2:c.4324T>G	p.Cys1442Gly	p.C1442G	ENST00000263388	NM_000435.2	1442	Tgc/Ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	293	700	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	67	484	0				ENST00000310581	NM_198253.2																																																																																
ABL1	25	MSKCC	GRCh37	9	133750394	133750394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	134	632	2	ENST00000318560.5:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000318560	NM_005157.4	409	Gag/Aag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129420	2129420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	214	816	0	ENST00000219476.3:c.3275C>T	p.Pro1092Leu	p.P1092L	ENST00000219476	NM_000548.3	1092	cCg/cTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272140	15272140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	58	1131	0	ENST00000263388.2:c.6299C>T	p.Ser2100Leu	p.S2100L	ENST00000263388	NM_000435.2	2100	tCg/tTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435828	56435828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs995358248		P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	15	723	2	ENST00000407977.2:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000407977		437	Cgg/Tgg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622138	1622138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	64	1017	2	ENST00000344749.5:c.737C>T	p.Pro246Leu	p.P246L	ENST00000344749	NM_001136139.2	246	cCg/cTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094997	11094997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	185	1117	0	ENST00000344626.4:c.170C>T	p.Pro57Leu	p.P57L	ENST00000344626	NM_003072.3	57	cCc/cTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509619	106509619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142822484		P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	71	564	0	ENST00000359195.3:c.1613C>T	p.Pro538Leu	p.P538L	ENST00000359195	NM_002649.2	538	cCg/cTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022616	31022616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	153	656	1	ENST00000375687.4:c.2101C>T	p.Pro701Ser	p.P701S	ENST00000375687	NM_015338.5	701	Cct/Tct																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476382	88476382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	31	626	0	ENST00000360948.2:c.1750G>A	p.Asp584Asn	p.D584N	ENST00000360948	NM_001012338.2	584	Gat/Aat																																																																														
NF1	4763	MSKCC	GRCh37	17	29585494	29585494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	36	259	0	ENST00000358273.4:c.4306G>A	p.Glu1436Lys	p.E1436K	ENST00000358273	NM_001042492.2	1436	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317926	8317926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	16	344	0	ENST00000356435.5:c.5687C>T	p.Ser1896Phe	p.S1896F	ENST00000356435		1896	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68982089	68982089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	26	499	0	ENST00000288368.4:c.1463G>C	p.Arg488Pro	p.R488P	ENST00000288368	NM_024870.2	488	cGt/cCt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610068	81610068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	17	502	0	ENST00000298171.2:c.1666C>T	p.Pro556Ser	p.P556S	ENST00000298171	NM_000369.2	556	Cct/Tct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118370615	118370615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	79	261	0	ENST00000534358.1:c.6145C>T	p.Pro2049Ser	p.P2049S	ENST00000534358	NM_005933.3	2049	Cct/Tct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400039	139400039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	174	978	1	ENST00000277541.6:c.4309G>A	p.Gly1437Arg	p.G1437R	ENST00000277541	NM_017617.3	1437	Ggg/Agg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375438	15375438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	219	923	0	ENST00000263377.2:c.989C>T	p.Pro330Leu	p.P330L	ENST00000263377	NM_058243.2	330	cCt/cTt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964454	70964454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	11	662	0	ENST00000276594.2:c.1574C>A	p.Ser525Tyr	p.S525Y	ENST00000276594	NM_024504.3	525	tCt/tAt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639407	3639407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	151	882	1	ENST00000294008.3:c.4232G>A	p.Arg1411Lys	p.R1411K	ENST00000294008	NM_032444.2	1411	aGa/aAa																																																																														
AR	367	MSKCC	GRCh37	X	66942737	66942737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	22	236	0	ENST00000374690.3:c.2518G>A	p.Asp840Asn	p.D840N	ENST00000374690	NM_000044.3	840	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858448	9858448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	35	535	0	ENST00000330684.3:c.2953C>T	p.Pro985Ser	p.P985S	ENST00000330684	NM_001134407.1	985	Cct/Tct																																																																														
RB1	5925	MSKCC	GRCh37	13	48955383	48955383	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	16	158	0	ENST00000267163.4:c.1499G>A	p.Arg500Lys	p.R500K	ENST00000267163	NM_000321.2	500	aGa/aAa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553435	106553435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs77256382		P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	93	455	1	ENST00000369096.4:c.1400C>T	p.Pro467Leu	p.P467L	ENST00000369096	NM_001198.3	467	cCg/cTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528570	89528570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	14	252	0	ENST00000336596.2:c.2870C>T	p.Thr957Ile	p.T957I	ENST00000336596	NM_005233.5	957	aCc/aTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2225413	2225413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	164	409	0	ENST00000398665.3:c.3623C>T	p.Ser1208Phe	p.S1208F	ENST00000398665	NM_032482.2	1208	tCc/tTc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073274	8073274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	150	316	0	ENST00000377482.5:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000377482	NM_018948.3	462	cCt/cTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258508	16258508	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199583436		P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	91	647	0	ENST00000375759.3:c.5773G>A	p.Glu1925Lys	p.E1925K	ENST00000375759	NM_015001.2	1925	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261651	16261652	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	180	651	0	ENST00000375759.3:c.8916_8917delinsTT	p.Leu2973Phe	p.L2973F	ENST00000375759	NM_015001.2	2972	gtCCtt/gtTTtt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243809239	243809239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	23	403	0	ENST00000263826.5:c.385G>A	p.Gly129Arg	p.G129R	ENST00000263826	NM_005465.4	129	Gga/Aga																																																																														
EED	8726	MSKCC	GRCh37	11	85979520	85979520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	41	334	0	ENST00000263360.6:c.883C>T	p.His295Tyr	p.H295Y	ENST00000263360	NM_003797.3	295	Cat/Tat																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416899	416900	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	63	461	0	ENST00000399788.2:c.3650_3651delinsAA	p.Arg1217Gln	p.R1217Q	ENST00000399788	NM_001042603.1	1217	cGG/cAA																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022459	12022459	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	72	873	0	ENST00000396373.4:c.565A>T	p.Asn189Tyr	p.N189Y	ENST00000396373	NM_001987.4	189	Aat/Tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416660	49416660	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	162	418	0	ENST00000301067.7:c.16053-2A>G		p.X5351_splice	ENST00000301067	NM_003482.3	5351																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420111	49420111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	64	665	0	ENST00000301067.7:c.15638C>G	p.Thr5213Arg	p.T5213R	ENST00000301067	NM_003482.3	5213	aCg/aGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433899	49433899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	88	1135	0	ENST00000301067.7:c.7654C>T	p.Pro2552Ser	p.P2552S	ENST00000301067	NM_003482.3	2552	Cct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912228	32912228	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	26	480	0	ENST00000380152.3:c.3736A>T	p.Asn1246Tyr	p.N1246Y	ENST00000380152		1246	Aat/Tat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590792	95590792	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	17	347	0	ENST00000343455.3:c.1117del	p.Val373Ter	p.V373*	ENST00000343455	NM_177438.2	373	Gta/ta																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646235	3646235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	147	1085	0	ENST00000294008.3:c.1843C>T	p.Leu615Phe	p.L615F	ENST00000294008	NM_032444.2	615	Ctc/Ttc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14031642	14031643	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TA			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	62	402	1	ENST00000311895.7:c.1831_1832delinsTA	p.Gly611Ter	p.G611*	ENST00000311895	NM_005236.2	611	GGa/TAa																																																																														
CDH1	999	MSKCC	GRCh37	16	68863639	68863639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	148	722	0	ENST00000261769.5:c.2378G>A	p.Ser793Asn	p.S793N	ENST00000261769	NM_004360.3	793	aGt/aAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993833	72993834	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	33	694	0	ENST00000268489.5:c.211_212delinsTT	p.Pro71Phe	p.P71F	ENST00000268489	NM_006885.3	71	CCc/TTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29664428	29664428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	64	481	0	ENST00000358273.4:c.6470C>T	p.Ser2157Leu	p.S2157L	ENST00000358273	NM_001042492.2	2157	tCa/tTa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763346	59763346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	41	627	0	ENST00000259008.2:c.2756C>T	p.Ser919Leu	p.S919L	ENST00000259008	NM_032043.2	919	tCa/tTa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120235	70120235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	103	789	0	ENST00000245479.2:c.1237C>T	p.His413Tyr	p.H413Y	ENST00000245479	NM_000346.3	413	Cac/Tac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212296	36212297	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	69	787	1	ENST00000222270.7:c.2047_2048delinsTT	p.Pro683Phe	p.P683F	ENST00000222270	NM_014727.1	683	CCt/TTt																																																																														
CIC	23152	MSKCC	GRCh37	19	42794850	42794850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	225	810	0	ENST00000575354.2:c.1930G>A	p.Gly644Arg	p.G644R	ENST00000575354	NM_015125.3	644	Gga/Aga																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905321	50905321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	56	1137	0	ENST00000440232.2:c.529C>T	p.Arg177Cys	p.R177C	ENST00000440232	NM_002691.3	177	Cgc/Tgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464523	25464523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	201	840	0	ENST00000264709.3:c.1990G>A	p.Glu664Lys	p.E664K	ENST00000264709	NM_175629.2	664	Gag/Aag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966102	25966102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	34	678	1	ENST00000435504.4:c.3104C>T	p.Pro1035Leu	p.P1035L	ENST00000435504		1035	cCc/cTc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794961	242794961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	263	1053	1	ENST00000334409.5:c.248C>T	p.Pro83Leu	p.P83L	ENST00000334409	NM_005018.2	83	cCc/cTc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265034	46265034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	67	475	0	ENST00000371998.3:c.1904C>T	p.Ser635Phe	p.S635F	ENST00000371998		635	tCc/tTc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24145509	24145510	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	139	723	2	ENST00000263121.7:c.528_529delinsTT	p.His177Tyr	p.H177Y	ENST00000263121	NM_003073.3	176	atCCat/atTTat																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182315	38182315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	32	494	0	ENST00000396334.3:c.751A>G	p.Lys251Glu	p.K251E	ENST00000396334	NM_002468.4	251	Aaa/Gaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588740	52588741	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	26	629	1	ENST00000394830.3:c.4287_4288delinsAA	p.Gly1430Ser	p.G1430S	ENST00000394830	NM_018313.4	1429	ccGGgt/ccAAgt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167709	185167710	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	11	502	0	ENST00000265026.3:c.1032_1033delinsAA	p.Trp344_Glu345delinsTer	p.W344_E345delins*	ENST00000265026	NM_004721.4	344	tgGGag/tgAAag																																																																														
TP63	8626	MSKCC	GRCh37	3	189584528	189584528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	50	402	0	ENST00000264731.3:c.824A>T	p.Tyr275Phe	p.Y275F	ENST00000264731	NM_003722.4	275	tAt/tTt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807690	1807995	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGGAGTAGGCTGGGCCCTGCCCTGAGATGCTGGGAGCAGCGGGGAGAGGTGGAGAGGCTTCAGCCCTGCCTCCCACCCCTTCCCCAGTGCATCCACAGGGACCTGGCTGCCCGCAATGTGCTGGTGACCGAGGACAACGTGATGAAGATCGCAGACTTCGGGCTGGCCCGGGACGTGCACAACCTCGACTACTACAAGAAGACGACCAACGTGAGCCCGGCCCTGGGGTGCGGGGGTGGGGGTCATGCCAGTAGGACGCCTGGCGCCAACACCGCCTTCCCACACCCTCCCAGGGCCGGCTGCCC	GTGGAGTAGGCTGGGCCCTGCCCTGAGATGCTGGGAGCAGCGGGGAGAGGTGGAGAGGCTTCAGCCCTGCCTCCCACCCCTTCCCCAGTGCATCCACAGGGACCTGGCTGCCCGCAATGTGCTGGTGACCGAGGACAACGTGATGAAGATCGCAGACTTCGGGCTGGCCCGGGACGTGCACAACCTCGACTACTACAAGAAGACGACCAACGTGAGCCCGGCCCTGGGGTGCGGGGGTGGGGGTCATGCCAGTAGGACGCCTGGCGCCAACACCGCCTTCCCACACCCTCCCAGGGCCGGCTGCCC	-			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	157	908	0	ENST00000260795.2:c.1836+26_1974del		p.X612_splice	ENST00000260795		612																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1808046	1808052	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GAGTGAC	GAGTGAC	-			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	165	1106	0	ENST00000260795.2:c.2023_2029del	p.Asp676GlyfsTer30	p.D676Gfs*30	ENST00000260795		674	caGAGTGAC/ca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518848	187518848	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	60	344	0	ENST00000441802.2:c.12356T>G	p.Phe4119Cys	p.F4119C	ENST00000441802	NM_005245.3	4119	tTt/tGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522427	187522427	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	31	393	0	ENST00000441802.2:c.11636T>A	p.Leu3879Ter	p.L3879*	ENST00000441802	NM_005245.3	3879	tTg/tAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532921	187532921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	21	252	0	ENST00000441802.2:c.9472C>T	p.Arg3158Trp	p.R3158W	ENST00000441802	NM_005245.3	3158	Cgg/Tgg																																																																														
IRF4	3662	MSKCC	GRCh37	6	394911	394911	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	94	515	0	ENST00000380956.4:c.307A>T	p.Lys103Ter	p.K103*	ENST00000380956	NM_001195286.1	103	Aag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2977548	2977548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	91	662	1	ENST00000396946.4:c.1136G>A	p.Arg379Gln	p.R379Q	ENST00000396946	NM_032415.4	379	cGg/cAg																																																																														
MET	4233	MSKCC	GRCh37	7	116435713	116435714	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	72	340	0	ENST00000397752.3:c.3803_3804delinsTT	p.Ser1268Phe	p.S1268F	ENST00000397752	NM_000245.2	1268	tCC/tTT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453094	140453094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	11	337	0	ENST00000288602.6:c.1841C>T	p.Ser614Phe	p.S614F	ENST00000288602	NM_004333.4	614	tCt/tTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132757	152132758	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	235	543	2	ENST00000262189.6:c.114_115delinsTT	p.Arg39Trp	p.R39W	ENST00000262189	NM_170606.2	38	ggCCgg/ggTTgg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38315038	38315038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	88	639	0	ENST00000425967.3:c.26G>A	p.Arg9Lys	p.R9K	ENST00000425967	NM_001174067.1	9	aGg/aAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971104	21971104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	112	747	0	ENST00000304494.5:c.254del	p.Ala85ValfsTer61	p.A85Vfs*61	ENST00000304494	NM_000077.4	85	gCt/gt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971104	21971104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	112	747	0	ENST00000304494.5:c.254del	p.Ala85ValfsTer61	p.A85Vfs*61	ENST00000304494	NM_000077.4	85	gCt/gt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971104	21971104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	112	747	0	ENST00000304494.5:c.254del	p.Ala85ValfsTer61	p.A85Vfs*61	ENST00000304494	NM_000077.4	85	gCt/gt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391110	139391111	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	130	1049	1	ENST00000277541.6:c.7080_7081delinsTT	p.Gln2361Ter	p.Q2361*	ENST00000277541	NM_017617.3	2360	tcCCag/tcTTag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395153	139395153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	152	1157	1	ENST00000277541.6:c.5785G>A	p.Glu1929Lys	p.E1929K	ENST00000277541	NM_017617.3	1929	Gag/Aag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412446	63412446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	45	498	1	ENST00000330258.3:c.721C>T	p.Pro241Ser	p.P241S	ENST00000330258	NM_152424.3	241	Cca/Tca																																																																														
BTK	695	MSKCC	GRCh37	X	100611256	100611256	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	48	240	0	ENST00000308731.7:c.1350G>A	p.Met450Ile	p.M450I	ENST00000308731	NM_000061.2	450	atG/atA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099959	27099962	+	frameshift_variant	Frame_Shift_Del	DEL	CCCT	CCCT	TTC			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	90	843	1	ENST00000324856.7:c.3838_3841delinsTTC	p.Pro1280PhefsTer9	p.P1280Ffs*9	ENST00000324856	NM_006015.4	1280	CCCTat/TTCat																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976853	2976855	+	missense_variant	Missense_Mutation	ONP	CTC	CTC	TTT			P-0046997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	60	657	0	ENST00000396946.4:c.1157_1159delinsAAA	p.Arg386_Asp387delinsGlnAsn	p.R386_D387delinsQN	ENST00000396946	NM_032415.4	386	cGAGat/cAAAat																																																																														
BRAF	673	MSKCC	GRCh37	7	140507849	140507849	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	38	462	0	ENST00000288602.6:c.622A>G	p.Ile208Val	p.I208V	ENST00000288602	NM_004333.4	208	Att/Gtt																																																																														
NF1	4763	MSKCC	GRCh37	17	29559090	29559090	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0047000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	46	85	0	ENST00000358273.4:c.3198-1G>A		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																															
DDR2	4921	MSKCC	GRCh37	1	162735805	162735805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	39	440	0	ENST00000367921.3:c.1114A>G	p.Asn372Asp	p.N372D	ENST00000367921	NM_006182.2	372	Aac/Gac																																																																														
BLM	641	MSKCC	GRCh37	15	91303838	91303838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	57	302	0	ENST00000355112.3:c.1235C>T	p.Thr412Met	p.T412M	ENST00000355112	NM_000057.2	412	aCg/aTg																																																																														
MET	4233	MSKCC	GRCh37	7	116411885	116411901	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTTTCTCTCTGTTTTAA	CTTTCTCTCTGTTTTAA	-			P-0047082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	200	696	0	ENST00000397752.3:c.2888-18_2888-2del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480435	50480435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	22	544	0	ENST00000394963.4:c.397C>G	p.Leu133Val	p.L133V	ENST00000394963	NM_003076.4	133	Cta/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	179	996	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179050	123179050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	109	344	0	ENST00000218089.9:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000218089	NM_001042749.1	167	Cag/Tag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	89	274	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056464	26056465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	75	455	0	ENST00000343677.2:c.192dup	p.Ala65SerfsTer8	p.A65Sfs*8	ENST00000343677	NM_005319.3	64	-/A																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230371	46230371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0047116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	63	342	0	ENST00000334344.6:c.706-1G>A		p.X236_splice	ENST00000334344	NM_152641.2	236																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32170046	32170046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	135	1034	0	ENST00000375023.3:c.3562G>A	p.Asp1188Asn	p.D1188N	ENST00000375023	NM_004557.3	1188	Gat/Aat																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363382	40363382	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	64	790	0	ENST00000397332.2:c.847G>C	p.Glu283Gln	p.E283Q	ENST00000397332	NM_001033082.2	283	Gag/Cag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	406303	406303	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	105	642	0	ENST00000399788.2:c.4138C>G	p.Pro1380Ala	p.P1380A	ENST00000399788	NM_001042603.1	1380	Ccc/Gcc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151866298	151866298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	38	379	0	ENST00000262189.6:c.9490C>T	p.Pro3164Ser	p.P3164S	ENST00000262189	NM_170606.2	3164	Cct/Tct																																																																														
CARD11	84433	MSKCC	GRCh37	7	2951891	2951891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116583746		P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	292	583	1	ENST00000396946.4:c.3059C>T	p.Thr1020Met	p.T1020M	ENST00000396946	NM_032415.4	1020	aCg/aTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	154	330	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	71	325	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	178	367	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944273	81944273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	342	651	0	ENST00000359376.3:c.1882G>A	p.Glu628Lys	p.E628K	ENST00000359376	NM_002661.3	628	Gag/Aag																																																																														
ATM	472	MSKCC	GRCh37	11	108099930	108099930	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	31	143	0	ENST00000278616.4:c.211G>T	p.Glu71Ter	p.E71*	ENST00000278616	NM_000051.3	71	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442925	49442925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	298	563	0	ENST00000301067.7:c.3983G>A	p.Arg1328Gln	p.R1328Q	ENST00000301067	NM_003482.3	1328	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578535	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	422	773	0	ENST00000269305.4:c.393_395dup	p.Asn131dup	p.N131dup	ENST00000269305	NM_001126112.2	131	aag/aaCAAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41265988	41266211	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGAT	CTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGAT	-			P-0047133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	14	170	0	ENST00000349496.5:c.14-29_208del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	232	359	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0047138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	302	495	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720862	89720868	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCAAA	CTCCAAA	-			P-0047138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	91	278	0	ENST00000371953.3:c.1013_1019del	p.Ser338PhefsTer4	p.S338Ffs*4	ENST00000371953	NM_000314.4	338	tCTCCAAAt/tt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484784	57484784	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	50	554	0	ENST00000371085.3:c.764T>C	p.Met255Thr	p.M255T	ENST00000371085	NM_000516.4	255	aTg/aCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	77	472	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	174	741	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	121	276	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256441	16256441	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	42	518	0	ENST00000375759.3:c.3706G>C	p.Asp1236His	p.D1236H	ENST00000375759	NM_015001.2	1236	Gat/Cat																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459290	120459290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	159	468	0	ENST00000256646.2:c.6055C>T	p.Arg2019Trp	p.R2019W	ENST00000256646	NM_024408.3	2019	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827295	72827295	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	47	811	0	ENST00000268489.5:c.9286C>T	p.Gln3096Ter	p.Q3096*	ENST00000268489	NM_006885.3	3096	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576867	7576868	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	451	694	0	ENST00000269305.4:c.978dup	p.Tyr327IlefsTer10	p.Y327Ifs*10	ENST00000269305	NM_001126112.2	326	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	40	592	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15311619	15311621	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-	rs772632118		P-0047150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	10	146	0	ENST00000263388.2:c.96_98del	p.Leu33del	p.L33del	ENST00000263388	NM_000435.2	32	ctGCTa/cta																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324651	31324651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	42	544	0	ENST00000412585.2:c.157G>C	p.Asp53His	p.D53H	ENST00000412585	NM_005514.6	53	Gac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	120	310	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	403	578	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18466994	18466994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	130	241	1	ENST00000266497.5:c.1133G>A	p.Arg378Gln	p.R378Q	ENST00000266497		378	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112173668	112173668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	127	270	0	ENST00000257430.4:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000257430	NM_000038.5	793	Caa/Taa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262204	10262204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	299	545	3	ENST00000340748.4:c.2087T>C	p.Met696Thr	p.M696T	ENST00000340748		696	aTg/aCg																																																																														
APC	324	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	AGA			P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	109	229	1	ENST00000257430.4:c.4479_4480delinsAGA	p.Ser1495LysfsTer19	p.S1495Kfs*19	ENST00000257430	NM_000038.5	1493	acGGaa/acAGAaa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371712	45371712	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	152	262	1	ENST00000262160.6:c.1279C>T	p.Arg427Ter	p.R427*	ENST00000262160	NM_005901.5	427	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173657	112173657	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	129	264	0	ENST00000257430.4:c.2366A>G	p.Gln789Arg	p.Q789R	ENST00000257430	NM_000038.5	789	cAg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	959	593	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	172	527	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937519	76937520	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0047152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	56	398	0	ENST00000373344.5:c.3228_3229del	p.Ser1077ArgfsTer3	p.S1077Rfs*3	ENST00000373344	NM_000489.3	1076	tcTTca/tcca																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	55	507	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	779	528	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	53	475	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	125	488	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	419	603	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380254	25380254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	96	409	0	ENST00000256078.4:c.204G>T	p.Arg68Ser	p.R68S	ENST00000256078	NM_033360.2	68	agG/agT																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030325	180030325	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115824945		P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	192	681	0	ENST00000261937.6:c.3959G>A	p.Arg1320Gln	p.R1320Q	ENST00000261937	NM_182925.4	1320	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	139	355	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112173975	112173975	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	57	242	0	ENST00000257430.4:c.2684C>G	p.Ser895Ter	p.S895*	ENST00000257430	NM_000038.5	895	tCa/tGa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120244	70120244	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	541	682	1	ENST00000245479.2:c.1246C>T	p.Gln416Ter	p.Q416*	ENST00000245479	NM_000346.3	416	Caa/Taa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178340	56178341	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	47	219	0	ENST00000399503.3:c.3315dup	p.Ile1106TyrfsTer4	p.I1106Yfs*4	ENST00000399503	NM_005921.1	1105	gtt/gTtt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30095727	30095727	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	13	305	0	ENST00000331968.5:c.1761A>C	p.Glu587Asp	p.E587D	ENST00000331968	NM_002742.2	587	gaA/gaC																																																																														
APC	324	MSKCC	GRCh37	5	112175756	112175759	+	frameshift_variant	Frame_Shift_Del	DEL	TTAC	TTAC	-			P-0047154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	34	237	0	ENST00000257430.4:c.4465_4468del	p.Leu1489IlefsTer17	p.L1489Ifs*17	ENST00000257430	NM_000038.5	1489	TTACat/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	129	523	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	157	576	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732318	74732318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	82	339	0	ENST00000359995.5:c.591G>C	p.Lys197Asn	p.K197N	ENST00000359995	NM_001195427.1	197	aaG/aaC																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535450	66535450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	78	400	0	ENST00000273854.3:c.11C>T	p.Ser4Leu	p.S4L	ENST00000273854	NM_004439.5	4	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105685	27105685	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	95	299	0	ENST00000324856.7:c.5296G>T	p.Glu1766Ter	p.E1766*	ENST00000324856	NM_006015.4	1766	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579418	7579418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	152	679	0	ENST00000269305.4:c.269C>T	p.Ser90Phe	p.S90F	ENST00000269305	NM_001126112.2	90	tCc/tTc																																																																														
CASP8	841	MSKCC	GRCh37	2	202139650	202139650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	70	249	0	ENST00000358485.4:c.811C>G	p.Pro271Ala	p.P271A	ENST00000358485	NM_001080125.1	271	Cca/Gca																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259172	36259172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	143	629	0	ENST00000300305.3:c.319C>G	p.Arg107Gly	p.R107G	ENST00000300305		107	Cgc/Ggc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106387	27106387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	106	464	0	ENST00000324856.7:c.5998G>C	p.Glu2000Gln	p.E2000Q	ENST00000324856	NM_006015.4	2000	Gag/Cag																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39321501	39321501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	77	401	0	ENST00000373001.3:c.520G>A	p.Glu174Lys	p.E174K	ENST00000373001	NM_022157.3	174	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310500	65310500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	98	465	0	ENST00000342505.4:c.2188G>A	p.Glu730Lys	p.E730K	ENST00000342505	NM_002227.2	730	Gag/Aag																																																																														
RFWD2	0	MSKCC	GRCh37	1	176176059	176176059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	148	532	0	ENST00000367669.3:c.56C>T	p.Ser19Leu	p.S19L	ENST00000367669	NM_022457.5	19	tCg/tTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325023	123325023	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	100	525	0	ENST00000358487.5:c.305C>G	p.Ser102Cys	p.S102C	ENST00000358487	NM_000141.4	102	tCc/tGc																																																																														
RB1	5925	MSKCC	GRCh37	13	48955539	48955539	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146236493		P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	32	270	0	ENST00000267163.4:c.1655G>A	p.Arg552Gln	p.R552Q	ENST00000267163	NM_000321.2	552	cGa/cAa																																																																														
RAD51	5888	MSKCC	GRCh37	15	41022122	41022122	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	118	500	0	ENST00000267868.3:c.846T>A	p.Asp282Glu	p.D282E	ENST00000267868	NM_002875.4	282	gaT/gaA																																																																														
NUP93	9688	MSKCC	GRCh37	16	56875655	56875655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	80	456	0	ENST00000308159.5:c.2259G>A	p.Met753Ile	p.M753I	ENST00000308159	NM_014669.4	753	atG/atA																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645927	67645927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	103	464	0	ENST00000264010.4:c.855G>T	p.Met285Ile	p.M285I	ENST00000264010	NM_006565.3	285	atG/atT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348701	89348701	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs151040526		P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	147	757	0	ENST00000301030.4:c.4249G>C	p.Asp1417His	p.D1417H	ENST00000301030	NM_001256183.1	1417	Gat/Cat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349070	89349070	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs144053389		P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	201	780	0	ENST00000301030.4:c.3880G>C	p.Glu1294Gln	p.E1294Q	ENST00000301030	NM_001256183.1	1294	Gaa/Caa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349405	89349405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	181	843	0	ENST00000301030.4:c.3545G>C	p.Arg1182Thr	p.R1182T	ENST00000301030	NM_001256183.1	1182	aGa/aCa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350609	89350609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	189	727	1	ENST00000301030.4:c.2341G>A	p.Asp781Asn	p.D781N	ENST00000301030	NM_001256183.1	781	Gat/Aat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125671	47125671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	81	312	0	ENST00000409792.3:c.5599G>A	p.Glu1867Lys	p.E1867K	ENST00000409792	NM_014159.6	1867	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522556	187522556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	90	338	0	ENST00000441802.2:c.11507G>C	p.Gly3836Ala	p.G3836A	ENST00000441802	NM_005245.3	3836	gGa/gCa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250101	110250101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	115	652	0	ENST00000374672.4:c.574G>T	p.Asp192Tyr	p.D192Y	ENST00000374672	NM_004235.4	192	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	119	319	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0047157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	168	630	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208064	5208064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	93	489	0	ENST00000357368.4:c.5647G>A	p.Gly1883Ser	p.G1883S	ENST00000357368	NM_002850.3	1883	Ggc/Agc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426649	212426649	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	129	403	0	ENST00000342788.4:c.2466C>G	p.Asn822Lys	p.N822K	ENST00000342788	NM_005235.2	822	aaC/aaG																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940508	49940508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	83	799	0	ENST00000296474.3:c.535G>T	p.Ala179Ser	p.A179S	ENST00000296474	NM_002447.2	179	Gcc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	43	634	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39240663	39240663	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	21	357	0	ENST00000402219.2:c.2105A>T	p.Tyr702Phe	p.Y702F	ENST00000402219	NM_005633.3	702	tAt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916861	178916861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	48	490	1	ENST00000263967.3:c.248T>C	p.Phe83Ser	p.F83S	ENST00000263967	NM_006218.2	83	tTt/tCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947865	178947865	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	16	294	0	ENST00000263967.3:c.2740G>C	p.Gly914Arg	p.G914R	ENST00000263967	NM_006218.2	914	Gga/Cga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	34	399	0				ENST00000310581	NM_198253.2																																																																																
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCCA			P-0047159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	147	376	0	ENST00000288135.5:c.1506_1507insCATGCC	p.Ala502_Tyr503insHisAla	p.A502_Y503insHA	ENST00000288135	NM_000222.2	501	tct/tcTGCCCAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	158	552	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0047195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	62	288	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0047195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	64	217	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	451	304	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306937	65306937	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	96	280	0	ENST00000342505.4:c.2640del	p.Leu881TrpfsTer30	p.L881Wfs*30	ENST00000342505	NM_002227.2	880	gaC/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445218	49445218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	200	934	1	ENST00000301067.7:c.2248C>T	p.Pro750Ser	p.P750S	ENST00000301067	NM_003482.3	750	Ccg/Tcg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492721	56492722	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0047198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	428	447	0	ENST00000407977.2:c.217dup	p.Ala73GlyfsTer2	p.A73Gfs*2	ENST00000407977		73	gct/gGct																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904872	101904872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	166	295	0	ENST00000374994.4:c.860C>A	p.Ser287Tyr	p.S287Y	ENST00000374994	NM_004612.2	287	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	92	529	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	50	349	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	45	258	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508389	106508389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	45	316	1	ENST00000359195.3:c.383C>T	p.Thr128Met	p.T128M	ENST00000359195	NM_002649.2	128	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	16	183	1	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa																																																																														
JUN	3725	MSKCC	GRCh37	1	59248242	59248243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	18	72	0	ENST00000371222.2:c.500dup	p.Pro168AlafsTer142	p.P168Afs*142	ENST00000371222	NM_002228.3	167	ccg/ccCg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43773107	43773108	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	88	532	0	ENST00000382044.4:c.484dup	p.Ser162PhefsTer5	p.S162Ffs*5	ENST00000382044	NM_001141980.1	162	tcc/tTcc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40858179	40858179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	67	545	0	ENST00000428826.2:c.1685G>A	p.Arg562His	p.R562H	ENST00000428826		562	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0047201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	78	298	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	279	423	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435420	110435420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	219	724	0	ENST00000375856.3:c.2981C>T	p.Pro994Leu	p.P994L	ENST00000375856	NM_003749.2	994	cCg/cTg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	429	649	0	ENST00000326873.7:c.290+1G>T		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																															
TCF3	6929	MSKCC	GRCh37	19	1625652	1625652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	283	973	1	ENST00000344749.5:c.422C>T	p.Ser141Leu	p.S141L	ENST00000344749	NM_001136139.2	141	tCg/tTg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021818	71021818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	156	217	0	ENST00000318789.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000318789	NM_032682.5	514	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518415	8518415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	80	264	0	ENST00000356435.5:c.976C>T	p.Pro326Ser	p.P326S	ENST00000356435		326	Cca/Tca																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442080	52442080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	364	466	0	ENST00000460680.1:c.269C>T	p.Ser90Phe	p.S90F	ENST00000460680	NM_004656.3	90	tCt/tTt																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130682	29130682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	151	393	0	ENST00000328354.6:c.28C>T	p.Gln10Ter	p.Q10*	ENST00000328354	NM_007194.3	10	Cag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857965	9857965	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	157	577	0	ENST00000330684.3:c.3436del	p.Asp1146ThrfsTer22	p.D1146Tfs*22	ENST00000330684	NM_001134407.1	1146	Gac/ac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100119	11100119	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	418	581	0	ENST00000344626.4:c.1245G>T	p.Gln415His	p.Q415H	ENST00000344626	NM_003072.3	415	caG/caT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525696	187525696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	128	404	0	ENST00000441802.2:c.10383G>T	p.Gln3461His	p.Q3461H	ENST00000441802	NM_005245.3	3461	caG/caT																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149511631	149511631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	349	574	1	ENST00000261799.4:c.1154G>T	p.Arg385Leu	p.R385L	ENST00000261799	NM_002609.3	385	cGc/cTc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570289	87570289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	177	701	0	ENST00000277120.3:c.2029G>T	p.Ala677Ser	p.A677S	ENST00000277120		677	Gcc/Tcc																																																																														
MET	4233	MSKCC	GRCh37	7	116412045	116412049	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TATAT	TATAT	-			P-0047203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	91	573	0	ENST00000397752.3:c.3028+3_3028+7del		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
RB1	5925	MSKCC	GRCh37	13	48953779	48953779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	42	164	0	ENST00000267163.4:c.1382T>C	p.Leu461Pro	p.L461P	ENST00000267163	NM_000321.2	461	cTt/cCt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8375931	8375935	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CTTAC	CTTAC	-			P-0047203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	24	308	0	ENST00000356435.5:c.4661+1_4661+5del		p.X1554_splice	ENST00000356435		1554																																																																															
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	595	845	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																														
RB1	5925	MSKCC	GRCh37	13	48941654	48941654	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	269	154	0	ENST00000267163.4:c.964G>T	p.Glu322Ter	p.E322*	ENST00000267163	NM_000321.2	322	Gaa/Taa																																																																														
SDHC	6391	MSKCC	GRCh37	1	161293408	161293408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	257	322	0	ENST00000367975.2:c.25G>T	p.Val9Phe	p.V9F	ENST00000367975	NM_003001.3	9	Gtt/Ttt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120496168	120496168	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	271	387	0	ENST00000256646.2:c.2363A>T	p.Lys788Ile	p.K788I	ENST00000256646	NM_024408.3	788	aAa/aTa																																																																														
FH	2271	MSKCC	GRCh37	1	241665866	241665866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	248	322	0	ENST00000366560.3:c.1113G>T	p.Lys371Asn	p.K371N	ENST00000366560	NM_000143.3	371	aaG/aaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720694	89720694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	201	245	0	ENST00000371953.3:c.845G>T	p.Gly282Val	p.G282V	ENST00000371953	NM_000314.4	282	gGa/gTa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154407	2154407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	474	862	0	ENST00000434045.2:c.521C>A	p.Thr174Asn	p.T174N	ENST00000434045	NM_001127598.1	174	aCc/aAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32903606	32903606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			9	344	271	0	ENST00000380152.3:c.658G>T	p.Val220Leu	p.V220L	ENST00000380152		220	Gta/Tta																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858783	9858784	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	125	182	0	ENST00000330684.3:c.2617_2618delinsTT	p.Gly873Leu	p.G873L	ENST00000330684	NM_001134407.1	873	GGa/TTa																																																																														
ALK	238	MSKCC	GRCh37	2	29917797	29917797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	461	717	3	ENST00000389048.3:c.871C>A	p.Arg291Ser	p.R291S	ENST00000389048	NM_004304.4	291	Cgc/Agc																																																																														
ATR	545	MSKCC	GRCh37	3	142188940	142188940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	244	312	0	ENST00000350721.4:c.6307G>A	p.Glu2103Lys	p.E2103K	ENST00000350721	NM_001184.3	2103	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55980310	55980310	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	289	377	0	ENST00000263923.4:c.781G>T	p.Glu261Ter	p.E261*	ENST00000263923	NM_002253.2	261	Gaa/Taa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517486	176517486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	508	966	0	ENST00000292408.4:c.187G>T	p.Gly63Cys	p.G63C	ENST00000292408	NM_213647.1	63	Ggt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653865	89653866	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AG	AG	T			P-0047204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	35	271	0	ENST00000371953.3:c.163_164delinsT	p.Arg55CysfsTer44	p.R55Cfs*44	ENST00000371953	NM_000314.4	55	AGg/Tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	138	559	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0047205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	65	258	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175548	112175548	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	34	270	0	ENST00000257430.4:c.4260delC	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1419	agC/ag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912182	114912182	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	67	511	2	ENST00000543371.1:c.1252T>C	p.Ser418Pro	p.S418P	ENST00000543371	NM_001198531.1	418	Tcc/Ccc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426256	49426256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	164	844	0	ENST00000301067.7:c.12232G>A	p.Val4078Ile	p.V4078I	ENST00000301067	NM_003482.3	4078	Gtc/Atc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347071	347071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	59	879	2	ENST00000262320.3:c.1940G>A	p.Arg647His	p.R647H	ENST00000262320	NM_003502.3	647	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	459	342	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	775	896	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5245913	5245913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	365	947	1	ENST00000357368.4:c.862G>A	p.Glu288Lys	p.E288K	ENST00000357368	NM_002850.3	288	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76938079	76938079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	256	396	0	ENST00000373344.5:c.2669C>T	p.Ser890Leu	p.S890L	ENST00000373344	NM_000489.3	890	tCa/tTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350504	89350504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	237	555	0	ENST00000301030.4:c.2446G>A	p.Glu816Lys	p.E816K	ENST00000301030	NM_001256183.1	816	Gaa/Aaa																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056617	26056617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	124	250	0	ENST00000343677.2:c.40C>T	p.Pro14Ser	p.P14S	ENST00000343677	NM_005319.3	14	Cct/Tct																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037492	12037492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	54	261	0	ENST00000396373.4:c.1123G>A	p.Gly375Arg	p.G375R	ENST00000396373	NM_001987.4	375	Gga/Aga																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45795022	45795022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	246	514	0	ENST00000372115.3:c.1564C>T	p.His522Tyr	p.H522Y	ENST00000372115	NM_001048171.1	522	Cac/Tac																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714239	43714239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	130	687	0	ENST00000382044.4:c.3914G>A	p.Gly1305Glu	p.G1305E	ENST00000382044	NM_001141980.1	1305	gGg/gAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993440	72993440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	391	794	0	ENST00000268489.5:c.605C>T	p.Ser202Leu	p.S202L	ENST00000268489	NM_006885.3	202	tCa/tTa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492710	56492710	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	171	405	0	ENST00000407977.2:c.229C>G	p.Pro77Ala	p.P77A	ENST00000407977		77	Cca/Gca																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644690	134644690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	175	359	0	ENST00000398015.3:c.91G>A	p.Glu31Lys	p.E31K	ENST00000398015	NM_004441.4	31	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55961105	55961105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	414	564	1	ENST00000263923.4:c.2835C>A	p.Phe945Leu	p.F945L	ENST00000263923	NM_002253.2	945	ttC/ttA																																																																														
APC	324	MSKCC	GRCh37	5	112179072	112179072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	80	169	0	ENST00000257430.4:c.7781C>G	p.Ser2594Cys	p.S2594C	ENST00000257430	NM_000038.5	2594	tCt/tGt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517446	157517446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	184	323	1	ENST00000346085.5:c.4010G>A	p.Arg1337Gln	p.R1337Q	ENST00000346085	NM_020732.3	1337	cGa/cAa																																																																														
HGF	3082	MSKCC	GRCh37	7	81331946	81331946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	62	158	0	ENST00000222390.5:c.2138C>G	p.Ala713Gly	p.A713G	ENST00000222390	NM_000601.4	713	gCa/gGa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939259	76939259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	371	488	0	ENST00000373344.5:c.1489G>A	p.Asp497Asn	p.D497N	ENST00000373344	NM_000489.3	497	Gat/Aat																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185026	123185026	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	55	328	0	ENST00000218089.9:c.1073A>T	p.Lys358Ile	p.K358I	ENST00000218089	NM_001042749.1	358	aAa/aTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	209	134	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812260	212812260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	142	113	0	ENST00000342788.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000342788	NM_005235.2	106	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980844	40980844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	204	668	0	ENST00000373198.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000373198	NM_133170.3	548	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720803	89720804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			100	98	72	0	ENST00000371953.3:c.955dup	p.Thr319AsnfsTer6	p.T319Nfs*6	ENST00000371953	NM_000314.4	318	-/A																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			680	838	965	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716366	18716366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	151	187	0	ENST00000266497.5:c.3713C>T	p.Ser1238Leu	p.S1238L	ENST00000266497		1238	tCa/tTa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955149	93955149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	203	131	0	ENST00000369303.4:c.2749C>T	p.Gln917Ter	p.Q917*	ENST00000369303	NM_004440.3	917	Caa/Taa																																																																														
SYK	6850	MSKCC	GRCh37	9	93640037	93640037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			172	110	345	0	ENST00000375746.1:c.1366C>T	p.Leu456Phe	p.L456F	ENST00000375746	NM_001174167.1	456	Ctc/Ttc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	186	598	0				ENST00000310581	NM_198253.2																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55139721	55139721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	180	413	0	ENST00000257290.5:c.1382C>T	p.Ser461Phe	p.S461F	ENST00000257290	NM_006206.4	461	tCc/tTc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073655	8073656	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	183	484	0	ENST00000377482.5:c.1003_1004delinsTT	p.Pro335Phe	p.P335F	ENST00000377482	NM_018948.3	335	CCc/TTc																																																																														
AKT1	207	MSKCC	GRCh37	14	105243102	105243102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	264	901	0	ENST00000349310.3:c.181C>T	p.Gln61Ter	p.Q61*	ENST00000349310	NM_001014432.1	61	Cag/Tag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99163051	99163051	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	186	371	0	ENST00000074304.5:c.1057C>T	p.Gln353Ter	p.Q353*	ENST00000074304	NM_001134224.1	353	Cag/Tag																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728857	190728857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	139	95	0	ENST00000441310.2:c.2245C>T	p.Pro749Ser	p.P749S	ENST00000441310	NM_000534.4	749	Cca/Tca																																																																														
PAK7	0	MSKCC	GRCh37	20	9520219	9520219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	216	458	0	ENST00000353224.5:c.2050G>A	p.Glu684Lys	p.E684K	ENST00000353224	NM_177990.2	684	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41566516	41566516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	169	275	1	ENST00000263253.7:c.4393G>A	p.Glu1465Lys	p.E1465K	ENST00000263253	NM_001429.3	1465	Gaa/Aaa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090558	71090558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	208	439	0	ENST00000318789.4:c.790C>T	p.Pro264Ser	p.P264S	ENST00000318789	NM_032682.5	264	Cct/Tct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117665387	117665387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	156	144	0	ENST00000368508.3:c.4360C>G	p.Pro1454Ala	p.P1454A	ENST00000368508	NM_002944.2	1454	Cca/Gca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709191	117709191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	106	234	0	ENST00000368508.3:c.1766T>A	p.Ile589Asn	p.I589N	ENST00000368508	NM_002944.2	589	aTc/aAc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005563	150005563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	171	349	0	ENST00000253339.5:c.662C>T	p.Ser221Leu	p.S221L	ENST00000253339		221	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	124	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	34	774	2				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0045684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			990	74	1102	8	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933761	39933761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			772	50	871	3	ENST00000378444.4:c.838G>A	p.Val280Ile	p.V280I	ENST00000378444	NM_001123385.1	280	Gtc/Atc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495336	56495336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			780	46	581	0	ENST00000267101.3:c.3526A>G	p.Thr1176Ala	p.T1176A	ENST00000267101	NM_001982.3	1176	Acc/Gcc																																																																														
APC	324	MSKCC	GRCh37	5	112178462	112178462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	31	161	0	ENST00000257430.4:c.7171A>G	p.Ile2391Val	p.I2391V	ENST00000257430	NM_000038.5	2391	Att/Gtt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0046477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	212	322	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	592	541	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871749	35871749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	274	518	0	ENST00000216797.5:c.757C>G	p.Pro253Ala	p.P253A	ENST00000216797	NM_020529.2	253	Ccc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0046620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	99	588	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
EZH1	2145	MSKCC	GRCh37	17	40858129	40858129	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	58	560	0	ENST00000428826.2:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000428826		579	Cga/Tga																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607547	46607547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	52	732	0	ENST00000263734.3:c.1736C>T	p.Pro579Leu	p.P579L	ENST00000263734	NM_001430.4	579	cCg/cTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031676	69031676	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	18	244	0	ENST00000288368.4:c.3431T>G	p.Leu1144Arg	p.L1144R	ENST00000288368	NM_024870.2	1144	cTt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	292	563	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	18	471	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	59	243	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	74	215	0	ENST00000257430.4:c.4497delA	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123784	11123784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	81	464	0	ENST00000344626.4:c.2434C>T	p.Leu812Phe	p.L812F	ENST00000344626	NM_003072.3	812	Ctc/Ttc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450243	50450243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	257	394	0	ENST00000331340.3:c.427C>T	p.Arg143Trp	p.R143W	ENST00000331340	NM_006060.4	143	Cgg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188210	32188210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	35	739	0	ENST00000375023.3:c.1131C>A	p.Phe377Leu	p.F377L	ENST00000375023	NM_004557.3	377	ttC/ttA																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868928	117868928	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	61	271	0	ENST00000297338.2:c.771G>C	p.Glu257Asp	p.E257D	ENST00000297338	NM_006265.2	257	gaG/gaC																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412472	63412473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	326	387	0	ENST00000330258.3:c.694dup	p.Gln232ProfsTer20	p.Q232Pfs*20	ENST00000330258	NM_152424.3	232	caa/cCaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	632	580	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355374	15355374	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs781044333		P-0046940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	102	470	0	ENST00000263377.2:c.2249C>T	p.Pro750Leu	p.P750L	ENST00000263377	NM_058243.2	750	cCg/cTg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40451808	40451808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	144	717	1	ENST00000345506.4:c.590G>A	p.Arg197His	p.R197H	ENST00000345506	NM_003152.3	197	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108126946	108126946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	41	354	0	ENST00000278616.4:c.2129C>A	p.Thr710Lys	p.T710K	ENST00000278616	NM_000051.3	710	aCa/aAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0046942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	25	239	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624239	89624272	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAAAGAGATCGTTAGCAGAAACAAAAGGAGAT	ATCAAAGAGATCGTTAGCAGAAACAAAAGGAGAT	-			P-0046942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	45	150	0	ENST00000371953.3:c.18_51del	p.Glu7ArgfsTer6	p.E7Rfs*6	ENST00000371953	NM_000314.4	5	ATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATat/at																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923738	72923738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	38	542	0	ENST00000268489.5:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000268489	NM_006885.3	1114	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70339230	70339230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	20	393	0	ENST00000374080.3:c.107T>C	p.Leu36Pro	p.L36P	ENST00000374080		36	cTg/cCg																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699498	117699498	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	29	245	0	ENST00000369458.3:c.143T>C	p.Ile48Thr	p.I48T	ENST00000369458	NM_024626.3	48	aTt/aCt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485058	57485058	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs1802356		P-0046942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	26	274	1	ENST00000371085.3:c.892G>T	p.Ala298Ser	p.A298S	ENST00000371085	NM_000516.4	298	Gct/Tct																																																																														
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	240	332	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353879	15353879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	152	468	0	ENST00000263377.2:c.3001C>T	p.Pro1001Ser	p.P1001S	ENST00000263377	NM_058243.2	1001	Ccc/Tcc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40368097	40368097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	197	422	0	ENST00000293328.3:c.1408G>A	p.Val470Ile	p.V470I	ENST00000293328	NM_012448.3	470	Gtt/Att																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740642	58740642	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	127	374	0	ENST00000305921.3:c.1547C>A	p.Ser516Ter	p.S516*	ENST00000305921	NM_003620.3	516	tCa/tAa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882319	89882320	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0046944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	178	440	1	ENST00000389301.3:c.154_155del	p.Arg52LysfsTer11	p.R52Kfs*11	ENST00000389301	NM_000135.2	52	CGa/a																																																																														
APC	324	MSKCC	GRCh37	5	112151290	112151291	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	CT			P-0046944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	137	180	1	ENST00000257430.4:c.933_933+1delinsCT		p.X311_splice	ENST00000257430	NM_000038.5	311																																																																															
WHSC1L1	0	MSKCC	GRCh37	8	38135369	38135840	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATAAGCCCAGCTGATGACCCACAAACTAATCCAGGTGCCCAATTGCCAGCAGGTTCCTGAGATGGTCACAAACACACAAACAGACTTCTTTTTTTTTTTTTTTTTGAGATAGAGTCTTGCACTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAAGCTCCGCATCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCATCACCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCAAACAGACTTCTTAACAGCCCTACTCCTTATCGCCTGTTGACTGGGGGCGCTCCCCTGCAAGACTGACCTTTGGCCGCACTCCTA	GATAAGCCCAGCTGATGACCCACAAACTAATCCAGGTGCCCAATTGCCAGCAGGTTCCTGAGATGGTCACAAACACACAAACAGACTTCTTTTTTTTTTTTTTTTTGAGATAGAGTCTTGCACTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAAGCTCCGCATCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCATCACCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCAAACAGACTTCTTAACAGCCCTACTCCTTATCGCCTGTTGACTGGGGGCGCTCCCCTGCAAGACTGACCTTTGGCCGCACTCCTA	-			P-0046944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	1625	0	0	ENST00000317025.8:c.3851_3867+455del		p.X1284_splice	ENST00000317025	NM_023034.1	1284																																																																															
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	184	594	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11168992	11168992	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	217	648	0	ENST00000344626.4:c.4486G>T	p.Glu1496Ter	p.E1496*	ENST00000344626	NM_003072.3	1496	Gag/Tag																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494692	2494692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	91	721	0	ENST00000355716.4:c.832G>T	p.Gly278Trp	p.G278W	ENST00000355716	NM_003820.2	278	Ggg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245528	153245528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	96	272	0	ENST00000281708.4:c.1663G>A	p.Val555Met	p.V555M	ENST00000281708	NM_033632.3	555	Gtg/Atg																																																																														
MGA	23269	MSKCC	GRCh37	15	41961219	41961219	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	219	307	0	ENST00000219905.7:c.127A>T	p.Thr43Ser	p.T43S	ENST00000219905	NM_001164273.1	43	Act/Tct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923488	9923488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	163	375	0	ENST00000330684.3:c.1799C>G	p.Thr600Arg	p.T600R	ENST00000330684	NM_001134407.1	600	aCa/aGa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584525	48584525	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	46	337	0	ENST00000342988.3:c.698A>T	p.His233Leu	p.H233L	ENST00000342988	NM_005359.5	233	cAt/cTt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217771	2217771	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	233	671	0	ENST00000398665.3:c.2545G>T	p.Gly849Cys	p.G849C	ENST00000398665	NM_032482.2	849	Ggc/Tgc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257890	19257890	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	296	965	0	ENST00000162023.5:c.496C>G	p.Arg166Gly	p.R166G	ENST00000162023		166	Cgc/Ggc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61722607	61722607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	68	114	0	ENST00000401558.2:c.1030A>G	p.Arg344Gly	p.R344G	ENST00000401558	NM_003400.3	344	Agg/Ggg																																																																														
EP300	2033	MSKCC	GRCh37	22	41554484	41554484	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	125	401	1	ENST00000263253.7:c.3571del	p.Tyr1191IlefsTer36	p.Y1191Ifs*36	ENST00000263253	NM_001429.3	1190	acT/ac																																																																														
ATR	545	MSKCC	GRCh37	3	142231217	142231217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	76	349	0	ENST00000350721.4:c.4737G>C	p.Gln1579His	p.Q1579H	ENST00000350721	NM_001184.3	1579	caG/caC																																																																														
NPM1	4869	MSKCC	GRCh37	5	170818789	170818789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	53	231	0	ENST00000296930.5:c.338G>C	p.Gly113Ala	p.G113A	ENST00000296930	NM_002520.6	113	gGa/gCa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522034	157522034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	77	500	1	ENST00000346085.5:c.4306G>A	p.Gly1436Arg	p.G1436R	ENST00000346085	NM_020732.3	1436	Ggg/Agg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950434	68950434	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	37	342	0	ENST00000288368.4:c.746G>C	p.Cys249Ser	p.C249S	ENST00000288368	NM_024870.2	249	tGt/tCt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225362535	225362540	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGTC	GCTGTC	T			P-0046945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	72	298	0	ENST00000264414.4:c.1637_1642delinsA	p.Arg546HisfsTer21	p.R546Hfs*21	ENST00000264414	NM_003590.4	546	cGACAGCtc/cAtc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	12	98	0				ENST00000310581	NM_198253.2																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610073	10610073	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	73	507	0	ENST00000171111.5:c.637G>T	p.Glu213Ter	p.E213*	ENST00000171111	NM_203500.1	213	Gag/Tag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921499	39921499	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	59	242	0	ENST00000378444.4:c.4321C>T	p.Gln1441Ter	p.Q1441*	ENST00000378444	NM_001123385.1	1441	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579312	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	70	472	0	ENST00000269305.4:c.375_375+1delinsTT		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
WT1	7490	MSKCC	GRCh37	11	32450158	32450158	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	63	552	2	ENST00000332351.3:c.654C>A	p.Ser218Arg	p.S218R	ENST00000332351	NM_024426.4	218	agC/agA																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588111	69588111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	64	450	0	ENST00000168712.1:c.587C>T	p.Thr196Ile	p.T196I	ENST00000168712	NM_002007.2	196	aCc/aTc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204894	94204894	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	17	249	0	ENST00000323929.3:c.691G>C	p.Glu231Gln	p.E231Q	ENST00000323929	NM_005591.3	231	Gaa/Caa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164837	47164837	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	47	197	0	ENST00000409792.3:c.1289C>G	p.Ser430Cys	p.S430C	ENST00000409792	NM_014159.6	430	tCt/tGt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52649448	52649448	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	72	329	0	ENST00000394830.3:c.1843G>T	p.Glu615Ter	p.E615*	ENST00000394830	NM_018313.4	615	Gag/Tag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902728	1902728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	73	437	0	ENST00000382891.5:c.347C>G	p.Pro116Arg	p.P116R	ENST00000382891	NM_133335.3	116	cCt/cGt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127397	55127397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	42	379	0	ENST00000257290.5:c.185C>A	p.Ser62Tyr	p.S62Y	ENST00000257290	NM_006206.4	62	tCt/tAt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127409	55127409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	54	381	0	ENST00000257290.5:c.197G>A	p.Ser66Asn	p.S66N	ENST00000257290	NM_006206.4	66	aGc/aAc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526521	31526523	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	31	531	0	ENST00000344624.3:c.517_519del	p.Ser173del	p.S173del	ENST00000344624		173	TCT/-																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045730	26045730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	76	302	0	ENST00000540144.1:c.92C>A	p.Pro31Gln	p.P31Q	ENST00000540144	NM_003531.2	31	cCg/cAg																																																																														
PARK2	0	MSKCC	GRCh37	6	162683662	162683662	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	24	208	0	ENST00000366898.1:c.307A>G	p.Thr103Ala	p.T103A	ENST00000366898	NM_004562.2	103	Act/Gct																																																																														
HGF	3082	MSKCC	GRCh37	7	81350087	81350087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	24	246	0	ENST00000222390.5:c.1245G>A	p.Trp415Ter	p.W415*	ENST00000222390	NM_000601.4	415	tgG/tgA																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5534951	5534951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	53	334	0	ENST00000397747.3:c.262C>T	p.His88Tyr	p.H88Y	ENST00000397747	NM_025239.3	88	Cac/Tac																																																																														
MET	4233	MSKCC	GRCh37	7	116411818	116412557	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCATGAGTTCTGGGCACTGGGTCAAAGTCTCCTGGGGCCCATGATAGCCGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAGTTCGCTACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAACTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTTCCAGAAGGTATATTTCAGTTTATTGTTCTGAGAAATACCTATACATATACCTCAGTGGGTTGTGACATTGTTGTTTATTTTTGGTTTTGCATTTATATTTTTATAAAAACCTAAAGGAAGTATTTACCTCTGCCAAGTAAGTATTTGACACAAAATTACATGGCTCTTAATTTTAAAAGAACCCATGTATATATTACATTATGATTTTAGAGTCCATAAGCTCTCATTTCACAAAAAGGTTAATTTGAGCAAAAGTAATTTGTTTATCATCTAAGTGCAATAGTAAGAAATTGCGAAGCTCTCTTTTACAATCCAGGAAGAGTTAAGTTACAAAATATACTTATTTAAATGTAAGTTGGAACTGCTACATTTTTTACCTGTTGAAGCCCAAACATTGAAATTATACTGTTAGTAATTCTTCGAAGTGTTTTCAATGAACTGTTAGTACACAGCCTTTTTCCCACCATATTCTAGGACTTGAATGTATTTTGAGACTTAGCCAAGGAAAACCTTCAATTATG	CCATGAGTTCTGGGCACTGGGTCAAAGTCTCCTGGGGCCCATGATAGCCGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAGTTCGCTACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAACTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTTCCAGAAGGTATATTTCAGTTTATTGTTCTGAGAAATACCTATACATATACCTCAGTGGGTTGTGACATTGTTGTTTATTTTTGGTTTTGCATTTATATTTTTATAAAAACCTAAAGGAAGTATTTACCTCTGCCAAGTAAGTATTTGACACAAAATTACATGGCTCTTAATTTTAAAAGAACCCATGTATATATTACATTATGATTTTAGAGTCCATAAGCTCTCATTTCACAAAAAGGTTAATTTGAGCAAAAGTAATTTGTTTATCATCTAAGTGCAATAGTAAGAAATTGCGAAGCTCTCTTTTACAATCCAGGAAGAGTTAAGTTACAAAATATACTTATTTAAATGTAAGTTGGAACTGCTACATTTTTTACCTGTTGAAGCCCAAACATTGAAATTATACTGTTAGTAATTCTTCGAAGTGTTTTCAATGAACTGTTAGTACACAGCCTTTTTCCCACCATATTCTAGGACTTGAATGTATTTTGAGACTTAGCCAAGGAAAACCTTCAATTATG	-			P-0046961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	227	785	0	ENST00000397752.3:c.2888-79_3028+520del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	23	331	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	178	1194	0	ENST00000171111.5:c.1249G>T	p.Gly417Trp	p.G417W	ENST00000171111	NM_203500.1	417	Ggg/Tgg																																																																														
STK11	6794	MSKCC	GRCh37	19	1218415	1218415	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs112675807		P-0046963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	78	493	0	ENST00000326873.7:c.291-1G>A		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2220720	2220720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	43	559	1	ENST00000326181.6:c.337G>A	p.Glu113Lys	p.E113K	ENST00000326181	NM_032271.2	113	Gag/Aag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89831475	89831475	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0046963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	53	513	0	ENST00000389301.3:c.2602-1G>C		p.X868_splice	ENST00000389301	NM_000135.2	868																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039609	47039609	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0046963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	62	301	0	ENST00000329236.7:c.829-2A>T		p.X277_splice	ENST00000329236	NM_001204466.1	277																																																																															
CDC73	79577	MSKCC	GRCh37	1	193104712	193104712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	61	188	0	ENST00000367435.3:c.416G>A	p.Arg139Gln	p.R139Q	ENST00000367435	NM_024529.4	139	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	262	563	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	77	295	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	23	193	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182637	38182637	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	36	253	1	ENST00000396334.3:c.790C>T	p.Arg264Ter	p.R264*	ENST00000396334	NM_002468.4	264	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	109	331	0	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98232132	98232132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	118	215	0	ENST00000331920.6:c.1810G>A	p.Glu604Lys	p.E604K	ENST00000331920	NM_000264.3	604	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41568563	41568563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	48	419	0	ENST00000263253.7:c.4513G>A	p.Glu1505Lys	p.E1505K	ENST00000263253	NM_001429.3	1505	Gag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509637	106509637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	120	393	0	ENST00000359195.3:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000359195	NM_002649.2	544	cGa/cAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961336	15961336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	176	397	0	ENST00000268712.3:c.6053G>A	p.Arg2018Gln	p.R2018Q	ENST00000268712	NM_006311.3	2018	cGa/cAa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922896	39922896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	325	551	1	ENST00000378444.4:c.3812C>T	p.Ser1271Leu	p.S1271L	ENST00000378444	NM_001123385.1	1271	tCg/tTg																																																																														
SDHD	6392	MSKCC	GRCh37	11	111958593	111958593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	153	321	1	ENST00000375549.3:c.65G>A	p.Arg22Gln	p.R22Q	ENST00000375549	NM_003002.3	22	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549428	187549428	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2304867		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	266	450	1	ENST00000441802.2:c.4690G>A	p.Ala1564Thr	p.A1564T	ENST00000441802	NM_005245.3	1564	Gct/Act																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259477	89259477	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200567888		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	56	368	0	ENST00000336596.2:c.621G>T	p.Lys207Asn	p.K207N	ENST00000336596	NM_005233.5	207	aaG/aaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576801	212576801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	31	284	0	ENST00000342788.4:c.1098G>T	p.Leu366Phe	p.L366F	ENST00000342788	NM_005235.2	366	ttG/ttT																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793710	89793710	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	84	216	0	ENST00000336032.3:c.779A>C	p.Lys260Thr	p.K260T	ENST00000336032	NM_006813.2	260	aAa/aCa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	431664	431664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	157	335	0	ENST00000399788.2:c.2345G>A	p.Arg782Gln	p.R782Q	ENST00000399788	NM_001042603.1	782	cGa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	190	393	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65335121	65335121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	176	384	0	ENST00000342505.4:c.520C>T	p.Arg174Ter	p.R174*	ENST00000342505	NM_002227.2	174	Cga/Tga																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641904	12641904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	102	185	0	ENST00000251849.4:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000251849	NM_002880.3	282	cGa/cAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	40	239	0	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	15	144	0	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	387	436	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001303	29001303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201407326		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	91	200	1	ENST00000282397.4:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000282397	NM_002019.4	477	Gaa/Aaa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740216	162740216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	351	388	1	ENST00000367921.3:c.1418G>A	p.Arg473His	p.R473H	ENST00000367921	NM_006182.2	473	cGc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026752	48026752	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	90	296	0	ENST00000234420.5:c.1630G>T	p.Glu544Ter	p.E544*	ENST00000234420	NM_000179.2	544	Gaa/Taa																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649686	48649686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	198	820	1	ENST00000376670.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000376670	NM_002049.3	57	gCt/gTt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	61	388	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	121	234	0	ENST00000257430.4:c.4199C>T	p.Ser1400Leu	p.S1400L	ENST00000257430	NM_000038.5	1400	tCg/tTg																																																																														
STK11	6794	MSKCC	GRCh37	19	1218483	1218483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	184	476	1	ENST00000326873.7:c.358G>A	p.Glu120Lys	p.E120K	ENST00000326873	NM_000455.4	120	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004222	29004222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	147	297	0	ENST00000282397.4:c.1071G>T	p.Met357Ile	p.M357I	ENST00000282397	NM_002019.4	357	atG/atT																																																																														
PMS2	5395	MSKCC	GRCh37	7	6036981	6036981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	310	287	0	ENST00000265849.7:c.779C>T	p.Ser260Phe	p.S260F	ENST00000265849	NM_000535.5	260	tCc/tTc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31389203	31389203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	233	410	0	ENST00000328111.2:c.2116G>A	p.Asp706Asn	p.D706N	ENST00000328111	NM_006892.3	706	Gac/Aac																																																																														
KDR	3791	MSKCC	GRCh37	4	55953890	55953890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	97	306	0	ENST00000263923.4:c.3546G>T	p.Glu1182Asp	p.E1182D	ENST00000263923	NM_002253.2	1182	gaG/gaT																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733503	85733503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	125	330	1	ENST00000370580.1:c.509C>A	p.Ser170Tyr	p.S170Y	ENST00000370580	NM_003921.4	170	tCt/tAt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851255	156851255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	269	675	1	ENST00000524377.1:c.2212G>A	p.Asp738Asn	p.D738N	ENST00000524377	NM_002529.3	738	Gac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112176873	112176873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	63	237	0	ENST00000257430.4:c.5582C>A	p.Ser1861Tyr	p.S1861Y	ENST00000257430	NM_000038.5	1861	tCt/tAt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258036	123258036	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	138	359	0	ENST00000358487.5:c.1645A>C	p.Asn549His	p.N549H	ENST00000358487	NM_000141.4	549	Aat/Cat																																																																														
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	74	321	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589298	28589298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	84	244	0	ENST00000241453.7:c.2749G>T	p.Glu917Ter	p.E917*	ENST00000241453	NM_004119.2	917	Gaa/Taa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351986	89351986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	417	704	0	ENST00000301030.4:c.964G>A	p.Glu322Lys	p.E322K	ENST00000301030	NM_001256183.1	322	Gag/Aag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161380	55161380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	195	338	0	ENST00000257290.5:c.3211G>A	p.Asp1071Asn	p.D1071N	ENST00000257290	NM_006206.4	1071	Gac/Aac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914743	39914743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	167	329	0	ENST00000378444.4:c.4619A>G	p.Asn1540Ser	p.N1540S	ENST00000378444	NM_001123385.1	1540	aAc/aGc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	25	445	1	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																																																														
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	264	366	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898755	134898755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	126	253	0	ENST00000398015.3:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000398015	NM_004441.4	605	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961867	41961867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	97	275	0	ENST00000219905.7:c.775C>T	p.Arg259Trp	p.R259W	ENST00000219905	NM_001164273.1	259	Cgg/Tgg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245326	41245326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	22	464	1	ENST00000357654.3:c.2222C>A	p.Ser741Tyr	p.S741Y	ENST00000357654	NM_007294.3	741	tCt/tAt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675571	30675571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	305	612	1	ENST00000376406.3:c.2785G>A	p.Asp929Asn	p.D929N	ENST00000376406	NM_014641.2	929	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500882	8500882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191877533		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	146	342	0	ENST00000356435.5:c.2000C>T	p.Ser667Leu	p.S667L	ENST00000356435		667	tCg/tTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66468014	66468014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	42	144	0	ENST00000273854.3:c.255G>T	p.Glu85Asp	p.E85D	ENST00000273854	NM_004439.5	85	gaG/gaT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259967	16259967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	199	489	0	ENST00000375759.3:c.7232C>T	p.Ser2411Leu	p.S2411L	ENST00000375759	NM_015001.2	2411	tCg/tTg																																																																														
BCL6	604	MSKCC	GRCh37	3	187447384	187447384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780987785		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	138	529	0	ENST00000232014.4:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000232014	NM_001130845.1	270	cGa/cAa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971370	13971370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	220	244	0	ENST00000405192.2:c.559C>T	p.Arg187Cys	p.R187C	ENST00000405192	NM_001163147.1	187	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176687122	176687122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	159	338	1	ENST00000439151.2:c.5099G>A	p.Arg1700Gln	p.R1700Q	ENST00000439151	NM_022455.4	1700	cGa/cAa																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40359740	40359740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	97	264	0	ENST00000293328.3:c.1913G>T	p.Arg638Ile	p.R638I	ENST00000293328	NM_012448.3	638	aGa/aTa																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66521949	66521949	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	100	212	1	ENST00000358598.2:c.604G>T	p.Glu202Ter	p.E202*	ENST00000358598	NM_212471.2	202	Gaa/Taa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121280	29121280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	62	506	1	ENST00000328354.6:c.395G>T	p.Arg132Ile	p.R132I	ENST00000328354	NM_007194.3	132	aGa/aTa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546725	9546725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	117	275	0	ENST00000353224.5:c.1297C>T	p.Arg433Trp	p.R433W	ENST00000353224	NM_177990.2	433	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435837	56435837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	260	509	0	ENST00000407977.2:c.1300C>T	p.Pro434Ser	p.P434S	ENST00000407977		434	Ccc/Tcc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729394	41729394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	203	460	0	ENST00000242208.4:c.1135C>T	p.Arg379Trp	p.R379W	ENST00000242208	NM_002192.2	379	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112177587	112177587	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	45	219	0	ENST00000257430.4:c.6296T>G	p.Phe2099Cys	p.F2099C	ENST00000257430	NM_000038.5	2099	tTt/tGt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646744	23646744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	136	415	0	ENST00000261584.4:c.1123C>A	p.Leu375Ile	p.L375I	ENST00000261584	NM_024675.3	375	Cta/Ata																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1315001	1315001	+	downstream_gene_variant	3'Flank	SNP	C	C	A	rs199680740		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	285	452	0				ENST00000381566																																																																																	
GRIN2A	2903	MSKCC	GRCh37	16	9984860	9984860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	194	362	0	ENST00000330684.3:c.1105G>T	p.Asp369Tyr	p.D369Y	ENST00000330684	NM_001134407.1	369	Gac/Tac																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220477	123220477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	214	431	0	ENST00000218089.9:c.3134G>A	p.Arg1045Gln	p.R1045Q	ENST00000218089	NM_001042749.1	1045	cGa/cAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285669	46285669	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	33	295	0	ENST00000334344.6:c.5029C>T	p.Arg1677Ter	p.R1677*	ENST00000334344	NM_152641.2	1677	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984651	72984651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	385	747	0	ENST00000268489.5:c.2933C>T	p.Ala978Val	p.A978V	ENST00000268489	NM_006885.3	978	gCg/gTg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143129648	143129648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	57	305	0	ENST00000262992.4:c.1002G>T	p.Glu334Asp	p.E334D	ENST00000262992	NM_001101669.1	334	gaG/gaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	89	152	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857334	9857334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	198	406	0	ENST00000330684.3:c.4067C>T	p.Ser1356Phe	p.S1356F	ENST00000330684	NM_001134407.1	1356	tCt/tTt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	130	356	0	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291528	10291528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	91	359	0	ENST00000340748.4:c.151G>A	p.Glu51Lys	p.E51K	ENST00000340748		51	Gaa/Aaa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181425	185181425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1435276633		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	130	324	0	ENST00000265026.3:c.1366C>T	p.Arg456Ter	p.R456*	ENST00000265026	NM_004721.4	456	Cga/Tga																																																																														
FLT1	2321	MSKCC	GRCh37	13	28963966	28963966	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	56	233	0	ENST00000282397.4:c.1936G>T	p.Glu646Ter	p.E646*	ENST00000282397	NM_002019.4	646	Gaa/Taa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65300295	65300295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	62	199	0	ENST00000342505.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000342505	NM_002227.2	1139	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112177359	112177359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	62	217	0	ENST00000257430.4:c.6068G>T	p.Arg2023Ile	p.R2023I	ENST00000257430	NM_000038.5	2023	aGa/aTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720928	176720928	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	205	376	0	ENST00000439151.2:c.6559C>T	p.Arg2187Ter	p.R2187*	ENST00000439151	NM_022455.4	2187	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710578	117710578	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142303126		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	129	193	0	ENST00000368508.3:c.1694C>T	p.Ser565Leu	p.S565L	ENST00000368508	NM_002944.2	565	tCg/tTg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94192594	94192594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	179	417	1	ENST00000323929.3:c.1480G>A	p.Glu494Lys	p.E494K	ENST00000323929	NM_005591.3	494	Gaa/Aaa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395686	45395686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200841904		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	100	268	0	ENST00000262160.6:c.448G>A	p.Glu150Lys	p.E150K	ENST00000262160	NM_005901.5	150	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7267638	7267638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	310	533	0	ENST00000302850.5:c.370G>A	p.Glu124Lys	p.E124K	ENST00000302850	NM_000208.2	124	Gag/Aag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467948	66467948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	75	204	0	ENST00000273854.3:c.321G>T	p.Gln107His	p.Q107H	ENST00000273854	NM_004439.5	107	caG/caT																																																																														
CCND2	894	MSKCC	GRCh37	12	4409167	4409167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	185	345	0	ENST00000261254.3:c.862G>A	p.Asp288Asn	p.D288N	ENST00000261254	NM_001759.3	288	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727174	40727174	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200157212		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	240	471	0	ENST00000373198.4:c.3790G>A	p.Ala1264Thr	p.A1264T	ENST00000373198	NM_133170.3	1264	Gcc/Acc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265007	198265007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	121	217	0	ENST00000335508.6:c.2870G>A	p.Arg957Gln	p.R957Q	ENST00000335508	NM_012433.2	957	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916669	178916669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	66	233	0	ENST00000263967.3:c.56G>T	p.Arg19Ile	p.R19I	ENST00000263967	NM_006218.2	19	aGa/aTa																																																																														
ATM	472	MSKCC	GRCh37	11	108115747	108115747	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	17	109	0	ENST00000278616.4:c.895G>T	p.Glu299Ter	p.E299*	ENST00000278616	NM_000051.3	299	Gaa/Taa																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045799	26045799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	238	588	0	ENST00000540144.1:c.161G>A	p.Arg54His	p.R54H	ENST00000540144	NM_003531.2	54	cGc/cAc																																																																														
CBL	867	MSKCC	GRCh37	11	119170373	119170373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	148	276	0	ENST00000264033.4:c.2603G>A	p.Gly868Glu	p.G868E	ENST00000264033	NM_005188.3	868	gGg/gAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934931	9934931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	90	222	0	ENST00000330684.3:c.1359G>T	p.Lys453Asn	p.K453N	ENST00000330684	NM_001134407.1	453	aaG/aaT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100016	11100016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	341	556	1	ENST00000344626.4:c.1142G>A	p.Arg381Gln	p.R381Q	ENST00000344626	NM_003072.3	381	cGa/cAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248560	212248560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	67	466	0	ENST00000342788.4:c.3707C>T	p.Ala1236Val	p.A1236V	ENST00000342788	NM_005235.2	1236	gCg/gTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670598	134670598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	300	613	0	ENST00000398015.3:c.509G>A	p.Arg170Gln	p.R170Q	ENST00000398015	NM_004441.4	170	cGg/cAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465467	8465467	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	51	238	0	ENST00000356435.5:c.3713C>A	p.Ser1238Tyr	p.S1238Y	ENST00000356435		1238	tCt/tAt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	28	205	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750596	41750596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	161	429	0	ENST00000226382.2:c.32C>T	p.Ser11Phe	p.S11F	ENST00000226382	NM_003924.3	11	tCc/tTc																																																																														
MET	4233	MSKCC	GRCh37	7	116398665	116398665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	95	242	0	ENST00000397752.3:c.2255C>A	p.Ser752Tyr	p.S752Y	ENST00000397752	NM_000245.2	752	tCt/tAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584578	187584578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	110	290	0	ENST00000441802.2:c.3455C>A	p.Ser1152Tyr	p.S1152Y	ENST00000441802	NM_005245.3	1152	tCt/tAt																																																																														
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	177	463	1	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342775	118342775	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	66	167	0	ENST00000534358.1:c.901C>T	p.Arg301Ter	p.R301*	ENST00000534358	NM_005933.3	301	Cga/Tga																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30322748	30322748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	23	236	0	ENST00000322652.5:c.1761G>T	p.Lys587Asn	p.K587N	ENST00000322652	NM_015355.2	587	aaG/aaT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118371707	118371707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	65	163	0	ENST00000534358.1:c.6164C>T	p.Ser2055Phe	p.S2055F	ENST00000534358	NM_005933.3	2055	tCc/tTc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271304	18271304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	388	694	0	ENST00000222254.8:c.346G>A	p.Glu116Lys	p.E116K	ENST00000222254	NM_005027.3	116	Gag/Aag																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728891	190728891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	23	184	0	ENST00000441310.2:c.2279G>T	p.Arg760Ile	p.R760I	ENST00000441310	NM_000534.4	760	aGa/aTa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515335	103515335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	17	179	0	ENST00000355739.4:c.1836G>T	p.Glu612Asp	p.E612D	ENST00000355739	NM_000123.3	612	gaG/gaT																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412470	80412470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28764015		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	138	271	0	ENST00000286548.4:c.571G>A	p.Glu191Lys	p.E191K	ENST00000286548	NM_002072.3	191	Gaa/Aaa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79961137	79961137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	104	331	1	ENST00000265081.6:c.534G>T	p.Lys178Asn	p.K178N	ENST00000265081	NM_002439.4	178	aaG/aaT																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185184669	185184669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202042288		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	134	252	0	ENST00000265026.3:c.1561C>T	p.Arg521Cys	p.R521C	ENST00000265026	NM_004721.4	521	Cgt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259533	55259533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	152	524	1	ENST00000275493.2:c.2591C>T	p.Ala864Val	p.A864V	ENST00000275493	NM_005228.3	864	gCg/gTg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206650051	206650051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	445	550	0	ENST00000367120.3:c.571C>T	p.Arg191Ter	p.R191*	ENST00000367120	NM_014002.3	191	Cga/Tga																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321717	62321717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	327	557	1	ENST00000508582.2:c.2408C>T	p.Ser803Leu	p.S803L	ENST00000508582		803	tCg/tTg																																																																														
CD276	80381	MSKCC	GRCh37	15	73996231	73996231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	195	379	0	ENST00000318443.5:c.965A>G	p.Asn322Ser	p.N322S	ENST00000318443	NM_001024736.1	322	aAt/aGt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748962	43748962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141222111		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	102	680	0	ENST00000382044.4:c.1844C>T	p.Thr615Met	p.T615M	ENST00000382044	NM_001141980.1	615	aCg/aTg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845395	156845395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139731614		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	391	775	0	ENST00000524377.1:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000524377	NM_002529.3	480	Gag/Aag																																																																														
TP63	8626	MSKCC	GRCh37	3	189590694	189590694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	169	385	0	ENST00000264731.3:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000264731	NM_003722.4	420	tCc/tTc																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966566	36966566	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	87	631	0	ENST00000358127.4:c.760G>T	p.Glu254Ter	p.E254*	ENST00000358127	NM_001280556.1	254	Gag/Tag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43784525	43784525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	33	403	0	ENST00000382044.4:c.149G>A	p.Arg50Gln	p.R50Q	ENST00000382044	NM_001141980.1	50	cGa/cAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256831	16256831	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	289	420	0	ENST00000375759.3:c.4096C>T	p.Arg1366Ter	p.R1366*	ENST00000375759	NM_015001.2	1366	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656338	18656338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	47	252	0	ENST00000266497.5:c.3017C>T	p.Ala1006Val	p.A1006V	ENST00000266497		1006	gCa/gTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530154	212530154	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	62	240	0	ENST00000342788.4:c.1765T>G	p.Cys589Gly	p.C589G	ENST00000342788	NM_005235.2	589	Tgt/Ggt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245009	41245009	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	140	469	0	ENST00000357654.3:c.2539A>G	p.Met847Val	p.M847V	ENST00000357654	NM_007294.3	847	Atg/Gtg																																																																														
PGR	5241	MSKCC	GRCh37	11	100999317	100999317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	162	921	0	ENST00000325455.5:c.485C>A	p.Ser162Tyr	p.S162Y	ENST00000325455	NM_001202474.3	162	tCc/tAc																																																																														
MET	4233	MSKCC	GRCh37	7	116418986	116418986	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199763277		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	179	197	0	ENST00000397752.3:c.3497G>A	p.Arg1166Gln	p.R1166Q	ENST00000397752	NM_000245.2	1166	cGa/cAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922938	44922938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	188	396	0	ENST00000377967.4:c.1799G>A	p.Gly600Glu	p.G600E	ENST00000377967	NM_021140.2	600	gGa/gAa																																																																														
INSR	3643	MSKCC	GRCh37	19	7122771	7122771	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202160383		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	236	558	0	ENST00000302850.5:c.3383G>A	p.Arg1128His	p.R1128H	ENST00000302850	NM_000208.2	1128	cGc/cAc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458329	12458329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	205	432	0	ENST00000287820.6:c.946C>T	p.Arg316Cys	p.R316C	ENST00000287820	NM_015869.4	316	Cgc/Tgc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86682664	86682664	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	24	125	0	ENST00000274376.6:c.2869A>G	p.Asn957Asp	p.N957D	ENST00000274376	NM_002890.2	957	Aat/Gat																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020790	37020790	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	186	376	0	ENST00000358127.4:c.55G>T	p.Gly19Ter	p.G19*	ENST00000358127	NM_001280556.1	19	Gga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277291	41277291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	115	255	0	ENST00000349496.5:c.1760G>A	p.Arg587Gln	p.R587Q	ENST00000349496	NM_001904.3	587	cGa/cAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201838	152201838	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	156	288	0	ENST00000206249.3:c.692A>C	p.Lys231Thr	p.K231T	ENST00000206249	NM_000125.3	231	aAa/aCa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106063	8106063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	205	412	1	ENST00000346208.3:c.883G>A	p.Gly295Arg	p.G295R	ENST00000346208		295	Gga/Aga																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300846	137300846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	401	776	1	ENST00000481739.1:c.491G>A	p.Arg164His	p.R164H	ENST00000481739	NM_002957.4	164	cGc/cAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884076	37884076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	228	782	0	ENST00000269571.5:c.3547G>T	p.Asp1183Tyr	p.D1183Y	ENST00000269571		1183	Gac/Tac																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349471	73349471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	114	307	0	ENST00000377767.4:c.865G>A	p.Glu289Lys	p.E289K	ENST00000377767	NM_014953.3	289	Gaa/Aaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70405743	70405743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	87	274	0	ENST00000373644.4:c.3257C>T	p.Ser1086Leu	p.S1086L	ENST00000373644	NM_030625.2	1086	tCg/tTg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46271087	46271087	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	174	343	0	ENST00000371998.3:c.3211G>T	p.Glu1071Ter	p.E1071*	ENST00000371998		1071	Gaa/Taa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054752	5054752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	61	225	0	ENST00000381652.3:c.804G>T	p.Glu268Asp	p.E268D	ENST00000381652	NM_004972.3	268	gaG/gaT																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170011280	170011280	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	131	324	1	ENST00000295797.4:c.1401G>T	p.Glu467Asp	p.E467D	ENST00000295797	NM_002740.5	467	gaG/gaT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230632	46230632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	89	328	1	ENST00000334344.6:c.881G>T	p.Arg294Ile	p.R294I	ENST00000334344	NM_152641.2	294	aGa/aTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3824685	3824685	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	191	380	1	ENST00000262367.5:c.2168C>A	p.Ser723Ter	p.S723*	ENST00000262367	NM_004380.2	723	tCa/tAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934583	9934583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	206	430	0	ENST00000330684.3:c.1572C>A	p.Phe524Leu	p.F524L	ENST00000330684	NM_001134407.1	524	ttC/ttA																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729932	30729932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	199	301	0	ENST00000359013.4:c.1528G>A	p.Glu510Lys	p.E510K	ENST00000359013	NM_001024847.2	510	Gaa/Aaa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240738	53240738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	240	503	0	ENST00000375401.3:c.1342G>T	p.Glu448Ter	p.E448*	ENST00000375401	NM_004187.3	448	Gaa/Taa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915579	131915579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28903087		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	18	137	1	ENST00000265335.6:c.577C>T	p.Arg193Trp	p.R193W	ENST00000265335		193	Cgg/Tgg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128347850	128347850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	244	477	0	ENST00000265960.3:c.655C>T	p.Arg219Trp	p.R219W	ENST00000265960	NM_001006617.1	219	Cgg/Tgg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625162	69625162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	355	847	3	ENST00000334134.2:c.631C>T	p.Arg211Trp	p.R211W	ENST00000334134	NM_005247.2	211	Cgg/Tgg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622622	158622622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	114	324	0	ENST00000263640.3:c.877G>A	p.Asp293Asn	p.D293N	ENST00000263640	NM_001105.4	293	Gac/Aac																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281838	39281838	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	46	312	0	ENST00000402219.2:c.637C>T	p.Arg213Ter	p.R213*	ENST00000402219	NM_005633.3	213	Cga/Tga																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233540	69233540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	95	268	0	ENST00000462284.1:c.1405A>G	p.Thr469Ala	p.T469A	ENST00000462284	NM_002392.5	469	Aca/Gca																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031893	10031893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	96	569	1	ENST00000330684.3:c.930C>A	p.Phe310Leu	p.F310L	ENST00000330684	NM_001134407.1	310	ttC/ttA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465627	8465627	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	24	309	0	ENST00000356435.5:c.3553G>T	p.Glu1185Ter	p.E1185*	ENST00000356435		1185	Gaa/Taa																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139794123	139794123	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs200834553		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	125	347	0	ENST00000247668.2:c.266C>T	p.Ser89Leu	p.S89L	ENST00000247668	NM_021138.3	89	tCg/tTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611388	28611388	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	51	308	0	ENST00000241453.7:c.1243G>T	p.Glu415Ter	p.E415*	ENST00000241453	NM_004119.2	415	Gaa/Taa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211487	98211487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	285	583	0	ENST00000331920.6:c.3668C>T	p.Ser1223Leu	p.S1223L	ENST00000331920	NM_000264.3	1223	tCg/tTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437879	52437879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	371	698	0	ENST00000460680.1:c.1282G>A	p.Ala428Thr	p.A428T	ENST00000460680	NM_004656.3	428	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951962	178951962	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	109	282	0	ENST00000263967.3:c.3017T>G	p.Leu1006Arg	p.L1006R	ENST00000263967	NM_006218.2	1006	cTt/cGt																																																																														
TEK	7010	MSKCC	GRCh37	9	27190529	27190529	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	143	398	0	ENST00000380036.4:c.1330C>A	p.Leu444Ile	p.L444I	ENST00000380036	NM_000459.3	444	Ctt/Att																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38616972	38616972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	10	225	0	ENST00000299084.4:c.385G>A	p.Glu129Lys	p.E129K	ENST00000299084	NM_152594.2	129	Gaa/Aaa																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349099	11349099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	179	277	0	ENST00000332029.2:c.237C>A	p.Phe79Leu	p.F79L	ENST00000332029	NM_003745.1	79	ttC/ttA																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56152446	56152446	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	52	129	0	ENST00000399503.3:c.502G>T	p.Glu168Ter	p.E168*	ENST00000399503	NM_005921.1	168	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912291	32912291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	40	288	0	ENST00000380152.3:c.3799G>T	p.Asp1267Tyr	p.D1267Y	ENST00000380152		1267	Gat/Tat																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942524	17942524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	200	847	0	ENST00000458235.1:c.2764G>A	p.Asp922Asn	p.D922N	ENST00000458235	NM_000215.3	922	Gat/Aat																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867477	35867477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	56	180	0	ENST00000303115.3:c.291G>T	p.Lys97Asn	p.K97N	ENST00000303115	NM_002185.3	97	aaG/aaT																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478122	99478122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	88	397	1	ENST00000268035.6:c.3026C>T	p.Ser1009Leu	p.S1009L	ENST00000268035	NM_000875.3	1009	tCg/tTg																																																																														
AR	367	MSKCC	GRCh37	X	66905929	66905929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	20	343	1	ENST00000374690.3:c.1846C>T	p.Arg616Cys	p.R616C	ENST00000374690	NM_000044.3	616	Cgt/Tgt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528185	103528185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	130	261	0	ENST00000355739.4:c.3493G>A	p.Ala1165Thr	p.A1165T	ENST00000355739	NM_000123.3	1165	Gcc/Acc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931321	131931321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	154	338	0	ENST00000265335.6:c.2026G>A	p.Glu676Lys	p.E676K	ENST00000265335		676	Gaa/Aaa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286951	33286951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	114	547	0	ENST00000374542.5:c.1986G>T	p.Lys662Asn	p.K662N	ENST00000374542	NM_001141970.1	662	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76949328	76949328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	57	290	0	ENST00000373344.5:c.469C>T	p.Leu157Phe	p.L157F	ENST00000373344	NM_000489.3	157	Ctc/Ttc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670256	134670256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	182	360	3	ENST00000398015.3:c.167G>A	p.Arg56His	p.R56H	ENST00000398015	NM_004441.4	56	cGc/cAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48955551	48955551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	33	190	0	ENST00000267163.4:c.1667G>A	p.Arg556Gln	p.R556Q	ENST00000267163	NM_000321.2	556	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980728	40980728	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	176	324	0	ENST00000373198.4:c.1758T>G	p.Ile586Met	p.I586M	ENST00000373198	NM_133170.3	586	atT/atG																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190436	32190436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	337	798	0	ENST00000375023.3:c.303C>A	p.Phe101Leu	p.F101L	ENST00000375023	NM_004557.3	101	ttC/ttA																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001539	150001539	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	27	293	0	ENST00000253339.5:c.2065G>T	p.Glu689Ter	p.E689*	ENST00000253339		689	Gaa/Taa																																																																														
KIT	3815	MSKCC	GRCh37	4	55565867	55565867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	42	357	0	ENST00000288135.5:c.691G>T	p.Val231Leu	p.V231L	ENST00000288135	NM_000222.2	231	Gtg/Ttg																																																																														
NF1	4763	MSKCC	GRCh37	17	29533379	29533379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	59	153	0	ENST00000358273.4:c.1382G>A	p.Arg461Gln	p.R461Q	ENST00000358273	NM_001042492.2	461	cGa/cAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880980	134880980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	225	479	1	ENST00000398015.3:c.1543G>A	p.Gly515Ser	p.G515S	ENST00000398015	NM_004441.4	515	Ggc/Agc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509561	106509561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	109	382	0	ENST00000359195.3:c.1555C>A	p.Leu519Ile	p.L519I	ENST00000359195	NM_002649.2	519	Ctt/Att																																																																														
INSR	3643	MSKCC	GRCh37	19	7267839	7267839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	174	370	0	ENST00000302850.5:c.169G>A	p.Glu57Lys	p.E57K	ENST00000302850	NM_000208.2	57	Gaa/Aaa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25462004	25462004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	101	469	0	ENST00000264709.3:c.2403G>T	p.Met801Ile	p.M801I	ENST00000264709	NM_175629.2	801	atG/atT																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740750	58740750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	157	391	0	ENST00000305921.3:c.1655G>T	p.Arg552Leu	p.R552L	ENST00000305921	NM_003620.3	552	cGa/cTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165003	47165003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	43	199	0	ENST00000409792.3:c.1123G>T	p.Asp375Tyr	p.D375Y	ENST00000409792	NM_014159.6	375	Gat/Tat																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608234	28608234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	84	385	0	ENST00000241453.7:c.1822G>T	p.Glu608Ter	p.E608*	ENST00000241453	NM_004119.2	608	Gaa/Taa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702632	52702632	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779102269		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	50	302	0	ENST00000394830.3:c.266C>A	p.Ser89Tyr	p.S89Y	ENST00000394830	NM_018313.4	89	tCt/tAt																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983213	149983213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	133	381	0	ENST00000253339.5:c.3045C>A	p.Phe1015Leu	p.F1015L	ENST00000253339		1015	ttC/ttA																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115803	8115803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	221	390	0	ENST00000346208.3:c.1149G>T	p.Glu383Asp	p.E383D	ENST00000346208		383	gaG/gaT																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519179	137519179	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	39	141	0	ENST00000367739.4:c.1459G>T	p.Glu487Ter	p.E487*	ENST00000367739	NM_000416.2	487	Gaa/Taa																																																																														
XIAP	331	MSKCC	GRCh37	X	123019669	123019669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	183	395	0	ENST00000355640.3:c.157C>A	p.Leu53Ile	p.L53I	ENST00000355640		53	Ctt/Att																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115267948	115267948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	113	286	0	ENST00000438362.2:c.1785C>A	p.Phe595Leu	p.F595L	ENST00000438362	NM_001242891.1	595	ttC/ttA																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319038	62319038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	236	868	0	ENST00000508582.2:c.1468G>A	p.Glu490Lys	p.E490K	ENST00000508582		490	Gag/Aag																																																																														
SESN3	143686	MSKCC	GRCh37	11	94906475	94906475	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	67	301	1	ENST00000536441.1:c.1423C>T	p.Arg475Ter	p.R475*	ENST00000536441	NM_144665.3	475	Cga/Tga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726716	88726716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	150	321	0	ENST00000360948.2:c.328A>G	p.Ile110Val	p.I110V	ENST00000360948	NM_001012338.2	110	Atc/Gtc																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233171	69233171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	50	189	0	ENST00000462284.1:c.1036G>A	p.Glu346Lys	p.E346K	ENST00000462284	NM_002392.5	346	Gaa/Aaa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112365	115112365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	171	301	0	ENST00000257566.3:c.1375C>T	p.Arg459Cys	p.R459C	ENST00000257566	NM_016569.3	459	Cgc/Tgc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159059	143159059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	31	231	0	ENST00000262992.4:c.794C>A	p.Pro265His	p.P265H	ENST00000262992	NM_001101669.1	265	cCt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224374	36224374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	436	841	0	ENST00000222270.7:c.6924G>T	p.Glu2308Asp	p.E2308D	ENST00000222270	NM_014727.1	2308	gaG/gaT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164388	47164388	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	50	207	0	ENST00000409792.3:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000409792	NM_014159.6	580	Gaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373178	118373178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	81	280	0	ENST00000534358.1:c.6571C>T	p.Arg2191Ter	p.R2191*	ENST00000534358	NM_005933.3	2191	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436851	110436851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	450	725	1	ENST00000375856.3:c.1550G>A	p.Arg517Gln	p.R517Q	ENST00000375856	NM_003749.2	517	cGa/cAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174912	11174912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	131	413	0	ENST00000361445.4:c.7122G>T	p.Lys2374Asn	p.K2374N	ENST00000361445	NM_004958.3	2374	aaG/aaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057660	27057660	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	286	401	0	ENST00000324856.7:c.1368A>C	p.Gln456His	p.Q456H	ENST00000324856	NM_006015.4	456	caA/caC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092983	27092983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	121	240	0	ENST00000324856.7:c.2914G>A	p.Asp972Asn	p.D972N	ENST00000324856	NM_006015.4	972	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105957	27105957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	109	412	0	ENST00000324856.7:c.5568G>T	p.Gln1856His	p.Q1856H	ENST00000324856	NM_006015.4	1856	caG/caT																																																																														
MPL	4352	MSKCC	GRCh37	1	43812182	43812182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	233	387	0	ENST00000372470.3:c.1047C>A	p.Phe349Leu	p.F349L	ENST00000372470	NM_005373.2	349	ttC/ttA																																																																														
MPL	4352	MSKCC	GRCh37	1	43818313	43818313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	504	601	0	ENST00000372470.3:c.1778G>T	p.Arg593Ile	p.R593I	ENST00000372470	NM_005373.2	593	aGa/aTa																																																																														
JUN	3725	MSKCC	GRCh37	1	59247836	59247836	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	655	683	0	ENST00000371222.2:c.907G>T	p.Glu303Ter	p.E303*	ENST00000371222	NM_002228.3	303	Gaa/Taa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65335153	65335153	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	33	286	0	ENST00000342505.4:c.488A>G	p.Gln163Arg	p.Q163R	ENST00000342505	NM_002227.2	163	cAg/cGg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72241938	72241938	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	105	230	0	ENST00000357731.5:c.452A>G	p.Asn151Ser	p.N151S	ENST00000357731	NM_173808.2	151	aAt/aGt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120491668	120491668	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	188	250	0	ENST00000256646.2:c.2561T>G	p.Phe854Cys	p.F854C	ENST00000256646	NM_024408.3	854	tTt/tGt																																																																														
MCL1	4170	MSKCC	GRCh37	1	150550820	150550820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	52	302	0	ENST00000369026.2:c.836A>G	p.Lys279Arg	p.K279R	ENST00000369026	NM_021960.4	279	aAg/aGg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156836704	156836704	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	79	658	0	ENST00000524377.1:c.362A>C	p.Asn121Thr	p.N121T	ENST00000524377	NM_002529.3	121	aAt/aCt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162688912	162688912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	274	355	0	ENST00000367921.3:c.59C>A	p.Ser20Tyr	p.S20Y	ENST00000367921	NM_006182.2	20	tCt/tAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724987	162724987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	139	288	0	ENST00000367921.3:c.459G>T	p.Lys153Asn	p.K153N	ENST00000367921	NM_006182.2	153	aaG/aaT																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725003	162725003	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	159	300	0	ENST00000367921.3:c.475A>G	p.Ile159Val	p.I159V	ENST00000367921	NM_006182.2	159	Att/Gtt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163310194	163310194	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	27	276	0	ENST00000271452.3:c.647T>G	p.Ile216Ser	p.I216S	ENST00000271452	NM_145697.2	216	aTt/aGt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163325134	163325134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	18	160	0	ENST00000271452.3:c.1270C>A	p.Leu424Ile	p.L424I	ENST00000271452	NM_145697.2	424	Cta/Ata																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012376	176012376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	117	258	0	ENST00000367669.3:c.1558G>T	p.Asp520Tyr	p.D520Y	ENST00000367669	NM_022457.5	520	Gac/Tac																																																																														
CDC73	79577	MSKCC	GRCh37	1	193181588	193181588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	18	219	0	ENST00000367435.3:c.1135G>T	p.Asp379Tyr	p.D379Y	ENST00000367435	NM_024529.4	379	Gac/Tac																																																																														
AKT3	10000	MSKCC	GRCh37	1	243809277	243809277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	111	307	0	ENST00000263826.5:c.347G>T	p.Arg116Ile	p.R116I	ENST00000263826	NM_005465.4	116	aGa/aTa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63759937	63759937	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	151	263	0	ENST00000279873.7:c.590A>C	p.Lys197Thr	p.K197T	ENST00000279873	NM_032199.2	197	aAg/aCg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63760053	63760053	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	117	249	0	ENST00000279873.7:c.706G>T	p.Glu236Ter	p.E236*	ENST00000279873	NM_032199.2	236	Gaa/Taa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332654	70332654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	137	389	0	ENST00000373644.4:c.559G>A	p.Glu187Lys	p.E187K	ENST00000373644	NM_030625.2	187	Gag/Aag																																																																														
TET1	80312	MSKCC	GRCh37	10	70405608	70405608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	73	326	0	ENST00000373644.4:c.3122G>T	p.Arg1041Ile	p.R1041I	ENST00000373644	NM_030625.2	1041	aGa/aTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711983	89711983	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	70	237	1	ENST00000371953.3:c.601G>T	p.Glu201Ter	p.E201*	ENST00000371953	NM_000314.4	201	Gaa/Taa																																																																														
SUFU	51684	MSKCC	GRCh37	10	104268963	104268963	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	311	499	0	ENST00000369902.3:c.220T>C	p.Tyr74His	p.Y74H	ENST00000369902	NM_016169.3	74	Tac/Cac																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112760262	112760262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	108	235	0	ENST00000369452.4:c.931G>T	p.Glu311Ter	p.E311*	ENST00000369452	NM_007373.3	311	Gaa/Taa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154865	2154865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	362	767	0	ENST00000434045.2:c.356G>A	p.Ser119Asn	p.S119N	ENST00000434045	NM_001127598.1	119	aGc/aAc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316365	14316365	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	148	401	0	ENST00000256196.4:c.240A>C	p.Glu80Asp	p.E80D	ENST00000256196		80	gaA/gaC																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741928	17741928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	138	219	0	ENST00000250003.3:c.599C>T	p.Ser200Phe	p.S200F	ENST00000250003	NM_002478.4	200	tCc/tTc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945342	71945342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	294	553	0	ENST00000298229.2:c.2230G>T	p.Asp744Tyr	p.D744Y	ENST00000298229	NM_001567.3	744	Gac/Tac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946733	71946733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	254	515	0	ENST00000298229.2:c.2674G>T	p.Asp892Tyr	p.D892Y	ENST00000298229	NM_001567.3	892	Gat/Tat																																																																														
EED	8726	MSKCC	GRCh37	11	85988989	85988989	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	30	206	0	ENST00000263360.6:c.1155A>C	p.Lys385Asn	p.K385N	ENST00000263360	NM_003797.3	385	aaA/aaC																																																																														
MRE11A	0	MSKCC	GRCh37	11	94211999	94211999	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	96	268	0	ENST00000323929.3:c.446T>G	p.Phe149Cys	p.F149C	ENST00000323929	NM_005591.3	149	tTt/tGt																																																																														
SESN3	143686	MSKCC	GRCh37	11	94917722	94917722	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	10	297	0	ENST00000536441.1:c.799G>T	p.Glu267Ter	p.E267*	ENST00000536441	NM_144665.3	267	Gaa/Taa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94923016	94923016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	23	319	0	ENST00000536441.1:c.452G>T	p.Arg151Ile	p.R151I	ENST00000536441	NM_144665.3	151	aGa/aTa																																																																														
PGR	5241	MSKCC	GRCh37	11	100920761	100920761	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	28	267	0	ENST00000325455.5:c.2387C>A	p.Ser796Ter	p.S796*	ENST00000325455	NM_001202474.3	796	tCa/tAa																																																																														
ATM	472	MSKCC	GRCh37	11	108115702	108115702	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	29	182	1	ENST00000278616.4:c.850C>A	p.Gln284Lys	p.Q284K	ENST00000278616	NM_000051.3	284	Caa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108117822	108117822	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	34	228	0	ENST00000278616.4:c.1033T>G	p.Leu345Val	p.L345V	ENST00000278616	NM_000051.3	345	Ttg/Gtg																																																																														
ATM	472	MSKCC	GRCh37	11	108155078	108155078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	30	303	0	ENST00000278616.4:c.3871C>A	p.Leu1291Ile	p.L1291I	ENST00000278616	NM_000051.3	1291	Ctt/Att																																																																														
ATM	472	MSKCC	GRCh37	11	108170546	108170546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	29	273	0	ENST00000278616.4:c.5111A>G	p.Glu1704Gly	p.E1704G	ENST00000278616	NM_000051.3	1704	gAa/gGa																																																																														
ATM	472	MSKCC	GRCh37	11	108205739	108205739	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	63	225	0	ENST00000278616.4:c.8054C>A	p.Ser2685Ter	p.S2685*	ENST00000278616	NM_000051.3	2685	tCa/tAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118339501	118339501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	136	256	0	ENST00000534358.1:c.444C>A	p.Phe148Leu	p.F148L	ENST00000534358	NM_005933.3	148	ttC/ttA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118359367	118359367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	137	260	1	ENST00000534358.1:c.4371G>T	p.Lys1457Asn	p.K1457N	ENST00000534358	NM_005933.3	1457	aaG/aaT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373907	118373907	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	55	191	0	ENST00000534358.1:c.7300A>C	p.Lys2434Gln	p.K2434Q	ENST00000534358	NM_005933.3	2434	Aaa/Caa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376541	118376541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	152	257	0	ENST00000534358.1:c.9934A>G	p.Thr3312Ala	p.T3312A	ENST00000534358	NM_005933.3	3312	Act/Gct																																																																														
CBL	867	MSKCC	GRCh37	11	119103374	119103374	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	56	253	0	ENST00000264033.4:c.412G>T	p.Glu138Ter	p.E138*	ENST00000264033	NM_005188.3	138	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416137	416137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	43	274	1	ENST00000399788.2:c.4049G>A	p.Arg1350Gln	p.R1350Q	ENST00000399788	NM_001042603.1	1350	cGa/cAa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	461452	461452	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	100	306	0	ENST00000399788.2:c.1068A>C	p.Gln356His	p.Q356H	ENST00000399788	NM_001042603.1	356	caA/caC																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435245	18435245	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	85	214	0	ENST00000266497.5:c.230C>A	p.Ser77Ter	p.S77*	ENST00000266497		77	tCa/tAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18466994	18466994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	19	235	0	ENST00000266497.5:c.1133G>T	p.Arg378Leu	p.R378L	ENST00000266497		378	cGa/cTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715797	18715797	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	55	220	0	ENST00000266497.5:c.3628A>C	p.Ile1210Leu	p.I1210L	ENST00000266497		1210	Att/Ctt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800949	18800949	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	21	223	0	ENST00000266497.5:c.4325A>G	p.Asn1442Ser	p.N1442S	ENST00000266497		1442	aAc/aGc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21624485	21624485	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	104	463	0	ENST00000421138.2:c.1544T>G	p.Leu515Arg	p.L515R	ENST00000421138		515	cTg/cGg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245505	46245505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	126	264	0	ENST00000334344.6:c.3599G>T	p.Gly1200Val	p.G1200V	ENST00000334344	NM_152641.2	1200	gGa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415648	49415648	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	131	273	0	ENST00000301067.7:c.16529A>G	p.Tyr5510Cys	p.Y5510C	ENST00000301067	NM_003482.3	5510	tAt/tGt																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484117	50484117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	241	434	0	ENST00000394963.4:c.967A>C	p.Ile323Leu	p.I323L	ENST00000394963	NM_003076.4	323	Att/Ctt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482610	56482610	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	320	545	0	ENST00000267101.3:c.1067A>C	p.Lys356Thr	p.K356T	ENST00000267101	NM_001982.3	356	aAg/aCg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487316	56487316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	154	280	0	ENST00000267101.3:c.1462C>T	p.Arg488Trp	p.R488W	ENST00000267101	NM_001982.3	488	Cgg/Tgg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811655	102811655	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	238	542	0	ENST00000307046.8:c.529G>T	p.Glu177Ter	p.E177*	ENST00000307046	NM_001111285.1	177	Gag/Tag																																																																														
IGF1	3479	MSKCC	GRCh37	12	102874129	102874129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	45	232	0	ENST00000307046.8:c.31T>G	p.Leu11Val	p.L11V	ENST00000307046	NM_001111285.1	11	Tta/Gta																																																																														
IGF1	3479	MSKCC	GRCh37	12	102874153	102874153	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	37	221	0	ENST00000307046.8:c.7A>C	p.Lys3Gln	p.K3Q	ENST00000307046	NM_001111285.1	3	Aaa/Caa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888252	112888252	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	136	318	0	ENST00000351677.2:c.268G>T	p.Glu90Ter	p.E90*	ENST00000351677	NM_002834.3	90	Gag/Tag																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112942506	112942506	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	18	160	0	ENST00000351677.2:c.1720G>T	p.Glu574Ter	p.E574*	ENST00000351677	NM_002834.3	574	Gaa/Taa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118838	115118838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	158	309	0	ENST00000257566.3:c.503C>A	p.Ser168Tyr	p.S168Y	ENST00000257566	NM_016569.3	168	tCt/tAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133234459	133234459	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs139603739		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	164	339	0	ENST00000320574.5:c.3373C>T	p.Arg1125Ter	p.R1125*	ENST00000320574	NM_006231.2	1125	Cga/Tga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563387	21563387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1217	176	960	0	ENST00000382592.4:c.532G>A	p.Asp178Asn	p.D178N	ENST00000382592	NM_014572.2	178	Gat/Aat																																																																														
FLT3	2322	MSKCC	GRCh37	13	28592719	28592719	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	205	316	0	ENST00000241453.7:c.2426A>G	p.His809Arg	p.H809R	ENST00000241453	NM_004119.2	809	cAc/cGc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28880820	28880820	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	246	468	0	ENST00000282397.4:c.3810G>T	p.Lys1270Asn	p.K1270N	ENST00000282397	NM_002019.4	1270	aaG/aaT																																																																														
FLT1	2321	MSKCC	GRCh37	13	28883015	28883015	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	122	356	0	ENST00000282397.4:c.3685G>T	p.Glu1229Ter	p.E1229*	ENST00000282397	NM_002019.4	1229	Gaa/Taa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895653	28895653	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	51	343	0	ENST00000282397.4:c.3121T>G	p.Phe1041Val	p.F1041V	ENST00000282397	NM_002019.4	1041	Ttt/Gtt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28903839	28903839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	78	580	0	ENST00000282397.4:c.2620G>A	p.Ala874Thr	p.A874T	ENST00000282397	NM_002019.4	874	Gct/Act																																																																														
FLT1	2321	MSKCC	GRCh37	13	28931696	28931696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	141	298	0	ENST00000282397.4:c.2243T>C	p.Val748Ala	p.V748A	ENST00000282397	NM_002019.4	748	gTt/gCt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005342	29005342	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	71	370	0	ENST00000282397.4:c.919G>T	p.Gly307Ter	p.G307*	ENST00000282397	NM_002019.4	307	Gga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906541	32906541	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	34	243	0	ENST00000380152.3:c.926C>A	p.Ser309Ter	p.S309*	ENST00000380152		309	tCa/tAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912918	32912918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	45	264	0	ENST00000380152.3:c.4426G>A	p.Asp1476Asn	p.D1476N	ENST00000380152		1476	Gac/Aac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914386	32914386	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	73	338	0	ENST00000380152.3:c.5894T>G	p.Leu1965Arg	p.L1965R	ENST00000380152		1965	cTt/cGt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73334017	73334017	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	32	211	0	ENST00000377767.4:c.2794-1G>T		p.X932_splice	ENST00000377767	NM_014953.3	932																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515291	103515291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	79	194	1	ENST00000355739.4:c.1792G>A	p.Asp598Asn	p.D598N	ENST00000355739	NM_000123.3	598	Gat/Aat																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524615	103524615	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	130	201	0	ENST00000355739.4:c.2746A>C	p.Lys916Gln	p.K916Q	ENST00000355739	NM_000123.3	916	Aaa/Caa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100225	30100225	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	73	221	0	ENST00000331968.5:c.1395A>C	p.Glu465Asp	p.E465D	ENST00000331968	NM_002742.2	465	gaA/gaC																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68352635	68352635	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	71	223	1	ENST00000487270.1:c.502G>T	p.Glu168Ter	p.E168*	ENST00000487270	NM_133509.3	168	Gaa/Taa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81557420	81557420	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	44	219	0	ENST00000298171.2:c.400T>C	p.Phe134Leu	p.F134L	ENST00000298171	NM_000369.2	134	Ttc/Ctc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606108	81606108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	288	407	0	ENST00000298171.2:c.778C>A	p.Leu260Ile	p.L260I	ENST00000298171	NM_000369.2	260	Ctt/Att																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606113	81606113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	85	410	0	ENST00000298171.2:c.783G>T	p.Lys261Asn	p.K261N	ENST00000298171	NM_000369.2	261	aaG/aaT																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569787	95569787	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	102	200	0	ENST00000343455.3:c.3946G>T	p.Glu1316Ter	p.E1316*	ENST00000343455	NM_177438.2	1316	Gaa/Taa																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022972	33022972	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	63	374	0	ENST00000300177.4:c.81A>C	p.Lys27Asn	p.K27N	ENST00000300177	NM_001191322.1	27	aaA/aaC																																																																														
MGA	23269	MSKCC	GRCh37	15	41961840	41961840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	34	272	0	ENST00000219905.7:c.748G>T	p.Asp250Tyr	p.D250Y	ENST00000219905	NM_001164273.1	250	Gat/Tat																																																																														
MGA	23269	MSKCC	GRCh37	15	42035031	42035031	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	55	425	0	ENST00000219905.7:c.4873G>T	p.Glu1625Ter	p.E1625*	ENST00000219905	NM_001164273.1	1625	Gaa/Taa																																																																														
BLM	641	MSKCC	GRCh37	15	91293279	91293279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	64	202	0	ENST00000355112.3:c.781C>A	p.His261Asn	p.H261N	ENST00000355112	NM_000057.2	261	Cat/Aat																																																																														
BLM	641	MSKCC	GRCh37	15	91303963	91303963	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	151	458	0	ENST00000355112.3:c.1360A>G	p.Asn454Asp	p.N454D	ENST00000355112	NM_000057.2	454	Aat/Gat																																																																														
BLM	641	MSKCC	GRCh37	15	91341477	91341477	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	27	238	0	ENST00000355112.3:c.3268G>T	p.Glu1090Ter	p.E1090*	ENST00000355112	NM_000057.2	1090	Gaa/Taa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251261	99251261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	54	458	0	ENST00000268035.6:c.565A>G	p.Lys189Glu	p.K189E	ENST00000268035	NM_000875.3	189	Aag/Gag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99482573	99482573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	191	437	0	ENST00000268035.6:c.3441C>A	p.Phe1147Leu	p.F1147L	ENST00000268035	NM_000875.3	1147	ttC/ttA																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641021	3641021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	413	754	3	ENST00000294008.3:c.2618C>T	p.Ala873Val	p.A873V	ENST00000294008	NM_032444.2	873	gCc/gTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3860752	3860752	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	197	354	0	ENST00000262367.5:c.827T>G	p.Phe276Cys	p.F276C	ENST00000262367	NM_004380.2	276	tTt/tGt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858137	9858137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	239	503	0	ENST00000330684.3:c.3264G>T	p.Arg1088Ser	p.R1088S	ENST00000330684	NM_001134407.1	1088	agG/agT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862914	9862914	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	220	507	0	ENST00000330684.3:c.2389A>G	p.Thr797Ala	p.T797A	ENST00000330684	NM_001134407.1	797	Act/Gct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934869	9934869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	48	340	0	ENST00000330684.3:c.1421C>A	p.Thr474Asn	p.T474N	ENST00000330684	NM_001134407.1	474	aCt/aAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273892	10273892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	320	741	0	ENST00000330684.3:c.377G>A	p.Gly126Asp	p.G126D	ENST00000330684	NM_001134407.1	126	gGc/gAc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641656	23641656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	73	344	0	ENST00000261584.4:c.1819C>A	p.Leu607Ile	p.L607I	ENST00000261584	NM_024675.3	607	Ctc/Atc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647328	23647328	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	36	400	0	ENST00000261584.4:c.539A>T	p.Glu180Val	p.E180V	ENST00000261584	NM_024675.3	180	gAa/gTa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50821710	50821710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	26	270	0	ENST00000398568.2:c.2046C>A	p.Phe682Leu	p.F682L	ENST00000398568	NM_001042412.1	682	ttC/ttA																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644754	67644754	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	166	304	0	ENST00000264010.4:c.19G>T	p.Glu7Ter	p.E7*	ENST00000264010	NM_006565.3	7	Gaa/Taa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888069	81888069	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	120	254	0	ENST00000359376.3:c.214G>T	p.Glu72Ter	p.E72*	ENST00000359376	NM_002661.3	72	Gaa/Taa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81927396	81927396	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	89	532	1	ENST00000359376.3:c.1069G>T	p.Glu357Ter	p.E357*	ENST00000359376	NM_002661.3	357	Gaa/Taa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349930	89349930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	381	716	0	ENST00000301030.4:c.3020G>A	p.Arg1007Gln	p.R1007Q	ENST00000301030	NM_001256183.1	1007	cGa/cAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350144	89350144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	368	713	0	ENST00000301030.4:c.2806G>A	p.Glu936Lys	p.E936K	ENST00000301030	NM_001256183.1	936	Gaa/Aaa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89831335	89831335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	299	534	0	ENST00000389301.3:c.2741G>T	p.Arg914Ile	p.R914I	ENST00000389301	NM_000135.2	914	aGa/aTa																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217835	7217835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	84	535	0	ENST00000380728.2:c.176G>T	p.Arg59Ile	p.R59I	ENST00000380728		59	aGa/aTa																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217872	7217872	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	150	422	0	ENST00000380728.2:c.139G>T	p.Glu47Ter	p.E47*	ENST00000380728		47	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7572931	7572931	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	201	430	0	ENST00000269305.4:c.1178A>G	p.Asp393Gly	p.D393G	ENST00000269305	NM_001126112.2	393	gAc/gGc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15942924	15942924	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	161	321	0	ENST00000268712.3:c.6778A>C	p.Asn2260His	p.N2260H	ENST00000268712	NM_006311.3	2260	Aat/Cat																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973823	15973823	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	49	293	0	ENST00000268712.3:c.4169T>G	p.Phe1390Cys	p.F1390C	ENST00000268712	NM_006311.3	1390	tTt/tGt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029434	16029434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	46	249	0	ENST00000268712.3:c.1596G>T	p.Lys532Asn	p.K532N	ENST00000268712	NM_006311.3	532	aaG/aaT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049769	16049769	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	68	345	0	ENST00000268712.3:c.1003G>T	p.Glu335Ter	p.E335*	ENST00000268712	NM_006311.3	335	Gaa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16089943	16089943	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	158	227	0	ENST00000268712.3:c.167T>G	p.Leu56Arg	p.L56R	ENST00000268712	NM_006311.3	56	cTt/cGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29556856	29556856	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	21	217	0	ENST00000358273.4:c.2854T>G	p.Leu952Val	p.L952V	ENST00000358273	NM_001042492.2	952	Tta/Gta																																																																														
NF1	4763	MSKCC	GRCh37	17	29588776	29588776	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	124	246	0	ENST00000358273.4:c.4625T>G	p.Leu1542Arg	p.L1542R	ENST00000358273	NM_001042492.2	1542	cTt/cGt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627509	37627509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	102	306	0	ENST00000447079.4:c.1424C>T	p.Ser475Phe	p.S475F	ENST00000447079	NM_015083.1	475	tCt/tTt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362502	40362502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	61	418	0	ENST00000293328.3:c.1694G>A	p.Gly565Glu	p.G565E	ENST00000293328	NM_012448.3	565	gGa/gAa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246218	41246218	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	67	342	0	ENST00000357654.3:c.1330A>C	p.Ser444Arg	p.S444R	ENST00000357654	NM_007294.3	444	Agt/Cgt																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805936	46805936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	151	338	0	ENST00000290295.7:c.20C>T	p.Ala7Val	p.A7V	ENST00000290295	NM_006361.5	7	gCc/gTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438226	56438226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	334	665	0	ENST00000407977.2:c.767G>A	p.Arg256Gln	p.R256Q	ENST00000407977		256	cGg/cAg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58725354	58725354	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	140	341	0	ENST00000305921.3:c.928A>C	p.Ile310Leu	p.I310L	ENST00000305921	NM_003620.3	310	Ata/Cta																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796930	78796930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	202	402	0	ENST00000306801.3:c.1043G>A	p.Arg348Gln	p.R348Q	ENST00000306801	NM_020761.2	348	cGa/cAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48586287	48586287	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	35	244	0	ENST00000342988.3:c.955+1G>A		p.X319_splice	ENST00000342988	NM_005359.5	319																																																																															
MALT1	10892	MSKCC	GRCh37	18	56367721	56367721	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	98	222	0	ENST00000348428.3:c.547A>C	p.Lys183Gln	p.K183Q	ENST00000348428	NM_006785.3	183	Aaa/Caa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56411617	56411617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	27	242	0	ENST00000348428.3:c.1801C>A	p.Gln601Lys	p.Q601K	ENST00000348428	NM_006785.3	601	Caa/Aaa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56412970	56412970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	37	259	0	ENST00000348428.3:c.1984G>A	p.Asp662Asn	p.D662N	ENST00000348428	NM_006785.3	662	Gat/Aat																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10254535	10254535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	282	496	0	ENST00000340748.4:c.2975G>A	p.Arg992Gln	p.R992Q	ENST00000340748		992	cGa/cAa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10259583	10259583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	335	576	0	ENST00000340748.4:c.2649G>T	p.Gln883His	p.Q883H	ENST00000340748		883	caG/caT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11169030	11169030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	129	577	1	ENST00000344626.4:c.4524G>T	p.Lys1508Asn	p.K1508N	ENST00000344626	NM_003072.3	1508	aaG/aaT																																																																														
CALR	811	MSKCC	GRCh37	19	13049518	13049543	+	frameshift_variant	Frame_Shift_Del	DEL	CTCGGCCTCCTCGGCCTGGCCGTCGC	CTCGGCCTCCTCGGCCTGGCCGTCGC	-			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	412	608	0	ENST00000316448.5:c.26_51del	p.Leu9ArgfsTer42	p.L9Rfs*42	ENST00000316448	NM_004343.3	9	CTCGGCCTCCTCGGCCTGGCCGTCGCc/c																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375447	15375447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	181	719	0	ENST00000263377.2:c.980C>A	p.Pro327His	p.P327H	ENST00000263377	NM_058243.2	327	cCt/cAt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18943153	18943153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	40	182	0	ENST00000262803.5:c.135G>T	p.Gln45His	p.Q45H	ENST00000262803	NM_002911.3	45	caG/caT																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965491	18965491	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	369	649	0	ENST00000262803.5:c.1238T>G	p.Phe413Cys	p.F413C	ENST00000262803	NM_002911.3	413	tTt/tGt																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313153	30313153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	194	387	0	ENST00000262643.3:c.847G>A	p.Asp283Asn	p.D283N	ENST00000262643	NM_001238.2	283	Gat/Aat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214378	36214378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	233	460	0	ENST00000222270.7:c.3032G>A	p.Arg1011Gln	p.R1011Q	ENST00000222270	NM_014727.1	1011	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910608	50910608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	169	723	1	ENST00000440232.2:c.1711C>T	p.Pro571Ser	p.P571S	ENST00000440232	NM_002691.3	571	Ccc/Tcc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965031	25965031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	226	386	0	ENST00000435504.4:c.4175G>A	p.Ser1392Asn	p.S1392N	ENST00000435504		1392	aGc/aAc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39251178	39251178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	53	329	0	ENST00000402219.2:c.1175C>A	p.Ser392Tyr	p.S392Y	ENST00000402219	NM_005633.3	392	tCt/tAt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39294829	39294829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	34	242	1	ENST00000402219.2:c.153A>T	p.Leu51Phe	p.L51F	ENST00000402219	NM_005633.3	51	ttA/ttT																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47600969	47600969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	187	390	0	ENST00000263735.4:c.207G>T	p.Met69Ile	p.M69I	ENST00000263735	NM_002354.2	69	atG/atT																																																																														
REL	5966	MSKCC	GRCh37	2	61144017	61144018	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	58	232	0	ENST00000295025.8:c.405dup	p.Gln136ThrfsTer4	p.Q136Tfs*4	ENST00000295025	NM_002908.2	134	gaa/gAaa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170758	99170758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199795768		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	81	423	0	ENST00000074304.5:c.1387G>A	p.Asp463Asn	p.D463N	ENST00000074304	NM_001134224.1	463	Gac/Aac																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095513	178095513	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	21	169	0	ENST00000397062.3:c.1818G>T	p.Ter606TyrextTer2	p.*606Yext*2	ENST00000397062	NM_006164.4	606	taG/taT																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098867	178098867	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	198	422	0	ENST00000397062.3:c.178G>T	p.Glu60Ter	p.E60*	ENST00000397062	NM_006164.4	60	Gaa/Taa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265494	198265494	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	37	353	0	ENST00000335508.6:c.2663T>G	p.Leu888Arg	p.L888R	ENST00000335508	NM_012433.2	888	cTt/cGt																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204737449	204737449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	41	206	0	ENST00000302823.3:c.586C>A	p.Leu196Ile	p.L196I	ENST00000302823	NM_005214.4	196	Ctt/Att																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251787	212251787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	204	287	0	ENST00000342788.4:c.3272C>T	p.Ala1091Val	p.A1091V	ENST00000342788	NM_005235.2	1091	gCt/gTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288952	212288952	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	163	332	0	ENST00000342788.4:c.2794T>G	p.Leu932Val	p.L932V	ENST00000342788	NM_005235.2	932	Tta/Gta																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770557	40770557	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	65	327	0	ENST00000373198.4:c.2825C>A	p.Ser942Tyr	p.S942Y	ENST00000373198	NM_133170.3	942	tCc/tAc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256717	46256717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	81	284	0	ENST00000371998.3:c.773G>T	p.Arg258Ile	p.R258I	ENST00000371998		258	aGa/aTa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262299	46262299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	21	289	1	ENST00000371998.3:c.883G>T	p.Asp295Tyr	p.D295Y	ENST00000371998		295	Gat/Tat																																																																														
EP300	2033	MSKCC	GRCh37	22	41537109	41537109	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	146	219	1	ENST00000263253.7:c.1936G>T	p.Glu646Ter	p.E646*	ENST00000263253	NM_001429.3	646	Gaa/Taa																																																																														
EP300	2033	MSKCC	GRCh37	22	41558740	41558740	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	33	223	0	ENST00000263253.7:c.3685G>T	p.Glu1229Ter	p.E1229*	ENST00000263253	NM_001429.3	1229	Gaa/Taa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641654	12641654	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	83	401	0	ENST00000251849.4:c.987A>C	p.Lys329Asn	p.K329N	ENST00000251849	NM_002880.3	329	aaA/aaC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163935	47163935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	56	260	0	ENST00000409792.3:c.2191G>T	p.Asp731Tyr	p.D731Y	ENST00000409792	NM_014159.6	731	Gac/Tac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164411	47164411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	57	221	0	ENST00000409792.3:c.1715C>A	p.Ser572Tyr	p.S572Y	ENST00000409792	NM_014159.6	572	tCt/tAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165752	47165752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	36	359	0	ENST00000409792.3:c.374C>A	p.Ser125Tyr	p.S125Y	ENST00000409792	NM_014159.6	125	tCt/tAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47205382	47205382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	104	411	0	ENST00000409792.3:c.33G>T	p.Lys11Asn	p.K11N	ENST00000409792	NM_014159.6	11	aaG/aaT																																																																														
RHOA	387	MSKCC	GRCh37	3	49397782	49397782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	92	392	0	ENST00000418115.1:c.442G>T	p.Ala148Ser	p.A148S	ENST00000418115	NM_001664.2	148	Gca/Tca																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933713	49933713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	371	709	0	ENST00000296474.3:c.2564C>T	p.Pro855Leu	p.P855L	ENST00000296474	NM_002447.2	855	cCt/cTt																																																																														
MITF	4286	MSKCC	GRCh37	3	70008509	70008509	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	137	251	0	ENST00000352241.4:c.1099G>T	p.Glu367Ter	p.E367*	ENST00000352241	NM_198159.2	367	Gaa/Taa																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114163	73114163	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	120	256	0	ENST00000356692.5:c.799G>T	p.Glu267Ter	p.E267*	ENST00000356692		267	Gaa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259325	89259325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	24	272	0	ENST00000336596.2:c.469C>A	p.Leu157Ile	p.L157I	ENST00000336596	NM_005233.5	157	Ctt/Att																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390084	89390084	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	81	219	0	ENST00000336596.2:c.833A>T	p.Tyr278Phe	p.Y278F	ENST00000336596	NM_005233.5	278	tAc/tTc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582343	119582343	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	183	285	0	ENST00000316626.5:c.1058T>G	p.Phe353Cys	p.F353C	ENST00000316626		353	tTt/tGt																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582425	119582425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	41	208	0	ENST00000316626.5:c.976G>A	p.Ala326Thr	p.A326T	ENST00000316626		326	Gca/Aca																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670212	134670212	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	109	278	0	ENST00000398015.3:c.124-1G>A		p.X42_splice	ENST00000398015	NM_004441.4	42																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670334	134670334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	198	360	1	ENST00000398015.3:c.245C>G	p.Ala82Gly	p.A82G	ENST00000398015	NM_004441.4	82	gCc/gGc																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260306	149260306	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	138	638	0	ENST00000360632.3:c.587A>C	p.Gln196Pro	p.Q196P	ENST00000360632	NM_015472.4	196	cAg/cCg																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683387	182683387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	39	284	0	ENST00000292782.4:c.158G>A	p.Arg53Gln	p.R53Q	ENST00000292782	NM_020640.2	53	cGa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612110	189612110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	308	461	0	ENST00000264731.3:c.1862G>T	p.Ser621Ile	p.S621I	ENST00000264731	NM_003722.4	621	aGc/aTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807888	1807888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	124	807	0	ENST00000260795.2:c.1947G>T	p.Lys649Asn	p.K649N	ENST00000260795		649	aaG/aaT																																																																														
WHSC1	0	MSKCC	GRCh37	4	1977029	1977029	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs112199742		P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	305	521	0	ENST00000382891.5:c.3523C>A	p.Leu1175Met	p.L1175M	ENST00000382891	NM_133335.3	1175	Ctg/Atg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139876	55139876	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	168	310	0	ENST00000257290.5:c.1537G>T	p.Glu513Ter	p.E513*	ENST00000257290	NM_006206.4	513	Gag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156479	55156479	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	140	274	0	ENST00000257290.5:c.2881-1G>T		p.X961_splice	ENST00000257290	NM_006206.4	961																																																																															
KDR	3791	MSKCC	GRCh37	4	55953773	55953773	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	127	357	0	ENST00000263923.4:c.3662+1G>T		p.X1221_splice	ENST00000263923	NM_002253.2	1221																																																																															
KDR	3791	MSKCC	GRCh37	4	55961766	55961766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	120	321	0	ENST00000263923.4:c.2795G>T	p.Arg932Ile	p.R932I	ENST00000263923	NM_002253.2	932	aGa/aTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55976604	55976604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	109	371	0	ENST00000263923.4:c.1221G>T	p.Glu407Asp	p.E407D	ENST00000263923	NM_002253.2	407	gaG/gaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55984855	55984855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	43	403	0	ENST00000263923.4:c.274A>G	p.Lys92Glu	p.K92E	ENST00000263923	NM_002253.2	92	Aaa/Gaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231664	66231664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	46	268	0	ENST00000273854.3:c.2036G>T	p.Arg679Ile	p.R679I	ENST00000273854	NM_004439.5	679	aGa/aTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66468015	66468015	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	40	145	0	ENST00000273854.3:c.254A>C	p.Glu85Ala	p.E85A	ENST00000273854	NM_004439.5	85	gAg/gCg																																																																														
TET2	54790	MSKCC	GRCh37	4	106157424	106157424	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	50	190	0	ENST00000380013.4:c.2325C>A	p.Phe775Leu	p.F775L	ENST00000380013	NM_001127208.2	775	ttC/ttA																																																																														
TET2	54790	MSKCC	GRCh37	4	106193764	106193764	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	106	217	0	ENST00000380013.4:c.4226A>C	p.Lys1409Thr	p.K1409T	ENST00000380013	NM_001127208.2	1409	aAa/aCa																																																																														
TET2	54790	MSKCC	GRCh37	4	106197090	106197090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	113	226	0	ENST00000380013.4:c.5423G>T	p.Arg1808Ile	p.R1808I	ENST00000380013	NM_001127208.2	1808	aGa/aTa																																																																														
TET2	54790	MSKCC	GRCh37	4	106197584	106197584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	79	211	0	ENST00000380013.4:c.5917G>A	p.Glu1973Lys	p.E1973K	ENST00000380013	NM_001127208.2	1973	Gaa/Aaa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143129607	143129607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	50	277	0	ENST00000262992.4:c.1043G>A	p.Arg348Lys	p.R348K	ENST00000262992	NM_001101669.1	348	aGa/aAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332864	153332864	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	200	303	0	ENST00000281708.4:c.92A>C	p.Glu31Ala	p.E31A	ENST00000281708	NM_033632.3	31	gAa/gCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521237	187521237	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	227	524	0	ENST00000441802.2:c.11918T>C	p.Phe3973Ser	p.F3973S	ENST00000441802	NM_005245.3	3973	tTc/tCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540782	187540782	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	100	262	0	ENST00000441802.2:c.6958T>G	p.Tyr2320Asp	p.Y2320D	ENST00000441802	NM_005245.3	2320	Tac/Gac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630948	187630948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	165	337	0	ENST00000441802.2:c.34C>T	p.Leu12Phe	p.L12F	ENST00000441802	NM_005245.3	12	Ctc/Ttc																																																																														
SDHA	6389	MSKCC	GRCh37	5	224506	224506	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	149	223	0	ENST00000264932.6:c.182A>C	p.Glu61Ala	p.E61A	ENST00000264932	NM_004168.2	61	gAa/gCa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871284	35871284	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	40	184	0	ENST00000303115.3:c.506A>G	p.Tyr169Cys	p.Y169C	ENST00000303115	NM_002185.3	169	tAc/tGc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945595	38945595	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	20	180	0	ENST00000357387.3:c.4631C>T	p.Ser1544Leu	p.S1544L	ENST00000357387	NM_152756.3	1544	tCa/tTa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38949979	38949979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	37	265	0	ENST00000357387.3:c.3971C>A	p.Ser1324Tyr	p.S1324Y	ENST00000357387	NM_152756.3	1324	tCt/tAt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38975702	38975702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	118	276	0	ENST00000357387.3:c.826G>A	p.Asp276Asn	p.D276N	ENST00000357387	NM_152756.3	276	Gac/Aac																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750785	57750785	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	27	303	0	ENST00000274289.3:c.1819A>C	p.Lys607Gln	p.K607Q	ENST00000274289	NM_006622.3	607	Aaa/Caa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79952313	79952313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	108	291	0	ENST00000265081.6:c.321G>T	p.Lys107Asn	p.K107N	ENST00000265081	NM_002439.4	107	aaG/aaT																																																																														
MSH3	4437	MSKCC	GRCh37	5	80024704	80024704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	44	286	0	ENST00000265081.6:c.1488G>T	p.Glu496Asp	p.E496D	ENST00000265081	NM_002439.4	496	gaG/gaT																																																																														
MSH3	4437	MSKCC	GRCh37	5	80160737	80160737	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	51	367	0	ENST00000265081.6:c.3106G>T	p.Glu1036Ter	p.E1036*	ENST00000265081	NM_002439.4	1036	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175103	112175103	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	40	121	0	ENST00000257430.4:c.3812T>G	p.Phe1271Cys	p.F1271C	ENST00000257430	NM_000038.5	1271	tTt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112179171	112179171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	42	215	0	ENST00000257430.4:c.7880C>A	p.Ser2627Tyr	p.S2627Y	ENST00000257430	NM_000038.5	2627	tCt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112179297	112179297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	37	243	0	ENST00000257430.4:c.8006C>A	p.Pro2669His	p.P2669H	ENST00000257430	NM_000038.5	2669	cCt/cAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131893024	131893024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	93	259	0	ENST00000265335.6:c.8G>T	p.Arg3Leu	p.R3L	ENST00000265335		3	cGg/cTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502739	149502739	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	126	492	0	ENST00000261799.4:c.2049C>A	p.Tyr683Ter	p.Y683*	ENST00000261799	NM_002609.3	683	taC/taA																																																																														
NPM1	4869	MSKCC	GRCh37	5	170832372	170832372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	11	202	0	ENST00000296930.5:c.736G>T	p.Asp246Tyr	p.D246Y	ENST00000296930	NM_002520.6	246	Gac/Tac																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053020	180053020	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	142	884	0	ENST00000261937.6:c.1270A>C	p.Ile424Leu	p.I424L	ENST00000261937	NM_182925.4	424	Ata/Cta																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670589	30670589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	106	434	0	ENST00000376406.3:c.5931G>T	p.Lys1977Asn	p.K1977N	ENST00000376406	NM_014641.2	1977	aaG/aaT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672698	30672698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	318	737	0	ENST00000376406.3:c.4262A>G	p.Asp1421Gly	p.D1421G	ENST00000376406	NM_014641.2	1421	gAc/gGc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675685	30675685	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	61	572	0	ENST00000376406.3:c.2671A>C	p.Lys891Gln	p.K891Q	ENST00000376406	NM_014641.2	891	Aag/Cag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166718	32166718	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	439	830	0	ENST00000375023.3:c.4520A>G	p.Asp1507Gly	p.D1507G	ENST00000375023	NM_004557.3	1507	gAc/gGc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184727	32184727	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	90	493	0	ENST00000375023.3:c.1856T>G	p.Phe619Cys	p.F619C	ENST00000375023	NM_004557.3	619	tTc/tGc																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793507	89793507	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	53	162	0	ENST00000336032.3:c.576T>G	p.Ile192Met	p.I192M	ENST00000336032	NM_006813.2	192	atT/atG																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554799	106554799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	58	235	0	ENST00000369096.4:c.1916G>T	p.Arg639Ile	p.R639I	ENST00000369096	NM_001198.3	639	aGa/aTa																																																																														
FYN	2534	MSKCC	GRCh37	6	112035567	112035567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	28	219	0	ENST00000368678.4:c.327T>G	p.Phe109Leu	p.F109L	ENST00000368678		109	ttT/ttG																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157495145	157495145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	145	253	0	ENST00000346085.5:c.3029C>T	p.Ser1010Phe	p.S1010F	ENST00000346085	NM_020732.3	1010	tCt/tTt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962800	2962800	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	133	696	0	ENST00000396946.4:c.2108A>C	p.Lys703Thr	p.K703T	ENST00000396946	NM_032415.4	703	aAa/aCa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210033	55210033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	61	338	0	ENST00000275493.2:c.143T>C	p.Phe48Ser	p.F48S	ENST00000275493	NM_005228.3	48	tTt/tCt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55220245	55220245	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	146	656	0	ENST00000275493.2:c.635A>C	p.Lys212Thr	p.K212T	ENST00000275493	NM_005228.3	212	aAa/aCa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266551	55266551	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	70	376	0	ENST00000275493.2:c.2843T>G	p.Val948Gly	p.V948G	ENST00000275493	NM_005228.3	948	gTc/gGc																																																																														
HGF	3082	MSKCC	GRCh37	7	81332001	81332001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	114	185	0	ENST00000222390.5:c.2083C>T	p.Arg695Cys	p.R695C	ENST00000222390	NM_000601.4	695	Cgt/Tgt																																																																														
HGF	3082	MSKCC	GRCh37	7	81359023	81359023	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	101	384	0	ENST00000222390.5:c.938A>G	p.Tyr313Cys	p.Y313C	ENST00000222390	NM_000601.4	313	tAc/tGc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526603	106526603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	169	264	0	ENST00000359195.3:c.2896G>A	p.Gly966Arg	p.G966R	ENST00000359195	NM_002649.2	966	Ggg/Agg																																																																														
MET	4233	MSKCC	GRCh37	7	116339953	116339953	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	53	240	0	ENST00000397752.3:c.815A>G	p.Gln272Arg	p.Q272R	ENST00000397752	NM_000245.2	272	cAg/cGg																																																																														
MET	4233	MSKCC	GRCh37	7	116422052	116422052	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	24	232	0	ENST00000397752.3:c.3533T>C	p.Val1178Ala	p.V1178A	ENST00000397752	NM_000245.2	1178	gTa/gCa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148504766	148504766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	401	423	1	ENST00000320356.2:c.2228G>A	p.Gly743Asp	p.G743D	ENST00000320356	NM_004456.4	743	gGc/gAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874344	151874344	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	36	271	0	ENST00000262189.6:c.8194T>G	p.Leu2732Val	p.L2732V	ENST00000262189	NM_170606.2	2732	Ttg/Gtg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874869	151874869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	41	266	0	ENST00000262189.6:c.7669G>A	p.Ala2557Thr	p.A2557T	ENST00000262189	NM_170606.2	2557	Gca/Aca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884899	151884899	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	59	222	0	ENST00000262189.6:c.4694T>G	p.Leu1565Arg	p.L1565R	ENST00000262189	NM_170606.2	1565	cTt/cGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132768	152132768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	188	469	0	ENST00000262189.6:c.104G>T	p.Arg35Ile	p.R35I	ENST00000262189	NM_170606.2	35	aGa/aTa																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345764	152345764	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	55	186	0	ENST00000359321.1:c.806T>G	p.Phe269Cys	p.F269C	ENST00000359321	NM_005431.1	269	tTt/tGt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133957	38133957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	188	488	1	ENST00000317025.8:c.3929G>A	p.Arg1310Gln	p.R1310Q	ENST00000317025	NM_023034.1	1310	cGa/cAa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38153361	38153361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	133	443	0	ENST00000317025.8:c.2868G>T	p.Lys956Asn	p.K956N	ENST00000317025	NM_023034.1	956	aaG/aaT																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187278	38187278	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	214	457	0	ENST00000317025.8:c.1199A>C	p.Glu400Ala	p.E400A	ENST00000317025	NM_023034.1	400	gAa/gCa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205317	38205317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	299	631	0	ENST00000317025.8:c.373C>A	p.Leu125Met	p.L125M	ENST00000317025	NM_023034.1	125	Ctg/Atg																																																																														
LYN	4067	MSKCC	GRCh37	8	56854431	56854431	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	48	207	0	ENST00000519728.1:c.13A>C	p.Lys5Gln	p.K5Q	ENST00000519728	NM_002350.3	5	Aaa/Caa																																																																														
LYN	4067	MSKCC	GRCh37	8	56860253	56860253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	166	332	1	ENST00000519728.1:c.255G>T	p.Lys85Asn	p.K85N	ENST00000519728	NM_002350.3	85	aaG/aaT																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950417	68950417	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	25	271	0	ENST00000288368.4:c.729C>A	p.Cys243Ter	p.C243*	ENST00000288368	NM_024870.2	243	tgC/tgA																																																																														
NBN	4683	MSKCC	GRCh37	8	90976724	90976724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	43	224	1	ENST00000265433.3:c.908G>T	p.Arg303Ile	p.R303I	ENST00000265433	NM_002485.4	303	aGa/aTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389236	8389236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	83	277	0	ENST00000356435.5:c.4382C>T	p.Ser1461Leu	p.S1461L	ENST00000356435		1461	tCa/tTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460424	8460424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	104	259	0	ENST00000356435.5:c.3862C>A	p.Leu1288Ile	p.L1288I	ENST00000356435		1288	Ctt/Att																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486124	8486124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	96	422	0	ENST00000356435.5:c.2693G>T	p.Arg898Ile	p.R898I	ENST00000356435		898	aGa/aTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504273	8504273	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	149	319	1	ENST00000356435.5:c.1810A>G	p.Thr604Ala	p.T604A	ENST00000356435		604	Acc/Gcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518286	8518286	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	110	227	0	ENST00000356435.5:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000356435		369	Gaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8733804	8733804	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	130	440	0	ENST00000356435.5:c.40T>G	p.Phe14Val	p.F14V	ENST00000356435		14	Ttc/Gtc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970924	21970924	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	157	685	0	ENST00000304494.5:c.434T>G	p.Ile145Arg	p.I145R	ENST00000304494	NM_000077.4	145	aTa/aGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970924	21970924	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	157	685	0	ENST00000304494.5:c.434T>G	p.Ile145Arg	p.I145R	ENST00000304494	NM_000077.4	145	aTa/aGa																																																																														
TEK	7010	MSKCC	GRCh37	9	27202945	27202945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	108	357	0	ENST00000380036.4:c.2037G>T	p.Lys679Asn	p.K679N	ENST00000380036	NM_000459.3	679	aaG/aaT																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015112	37015112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	276	553	0	ENST00000358127.4:c.292A>C	p.Lys98Gln	p.K98Q	ENST00000358127	NM_001280556.1	98	Aaa/Caa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80537219	80537219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	169	298	1	ENST00000286548.4:c.179G>A	p.Arg60Lys	p.R60K	ENST00000286548	NM_002072.3	60	aGa/aAa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317102	87317102	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	102	288	0	ENST00000277120.3:c.241A>C	p.Ile81Leu	p.I81L	ENST00000277120		81	Atc/Ctc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87475991	87475991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	112	608	0	ENST00000277120.3:c.1433G>T	p.Arg478Ile	p.R478I	ENST00000277120		478	aGa/aTa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87563376	87563376	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	75	337	0	ENST00000277120.3:c.1765-1G>T		p.X589_splice	ENST00000277120		589																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891164	101891164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	72	222	0	ENST00000374994.4:c.125C>T	p.Thr42Ile	p.T42I	ENST00000374994	NM_004612.2	42	aCa/aTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412610	139412610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	410	778	0	ENST00000277541.6:c.1234G>A	p.Asp412Asn	p.D412N	ENST00000277541	NM_017617.3	412	Gac/Aac																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815611	139815611	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	100	607	0	ENST00000247668.2:c.1082T>G	p.Phe361Cys	p.F361C	ENST00000247668	NM_021138.3	361	tTc/tGc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911509	39911509	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	214	472	0	ENST00000378444.4:c.5121C>A	p.Phe1707Leu	p.F1707L	ENST00000378444	NM_001123385.1	1707	ttC/ttA																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922160	39922160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	372	596	0	ENST00000378444.4:c.4012G>A	p.Glu1338Lys	p.E1338K	ENST00000378444	NM_001123385.1	1338	Gaa/Aaa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934418	39934418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	234	467	0	ENST00000378444.4:c.181G>A	p.Ala61Thr	p.A61T	ENST00000378444	NM_001123385.1	61	Gcc/Acc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44733201	44733201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	229	337	0	ENST00000377967.4:c.193G>T	p.Asp65Tyr	p.D65Y	ENST00000377967	NM_021140.2	65	Gat/Tat																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650446	48650446	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	388	778	0	ENST00000376670.3:c.416A>C	p.Glu139Ala	p.E139A	ENST00000376670	NM_002049.3	139	gAg/gCg																																																																														
MED12	9968	MSKCC	GRCh37	X	70354570	70354570	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	210	339	0	ENST00000374080.3:c.4735T>G	p.Phe1579Val	p.F1579V	ENST00000374080		1579	Ttc/Gtc																																																																														
MED12	9968	MSKCC	GRCh37	X	70360487	70360487	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	135	627	0	ENST00000374080.3:c.6047T>G	p.Phe2016Cys	p.F2016C	ENST00000374080		2016	tTt/tGt																																																																														
ATRX	546	MSKCC	GRCh37	X	76912126	76912126	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	16	248	0	ENST00000373344.5:c.4138G>T	p.Glu1380Ter	p.E1380*	ENST00000373344	NM_000489.3	1380	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76918920	76918920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	28	474	0	ENST00000373344.5:c.4071G>T	p.Lys1357Asn	p.K1357N	ENST00000373344	NM_000489.3	1357	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76937011	76937011	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	19	195	0	ENST00000373344.5:c.3736+1G>A		p.X1246_splice	ENST00000373344	NM_000489.3	1246																																																																															
ATRX	546	MSKCC	GRCh37	X	76937738	76937738	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	13	354	0	ENST00000373344.5:c.3010A>C	p.Lys1004Gln	p.K1004Q	ENST00000373344	NM_000489.3	1004	Aaa/Caa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938604	76938604	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	64	374	0	ENST00000373344.5:c.2144A>C	p.Lys715Thr	p.K715T	ENST00000373344	NM_000489.3	715	aAa/aCa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939409	76939409	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	75	485	0	ENST00000373344.5:c.1339G>T	p.Glu447Ter	p.E447*	ENST00000373344	NM_000489.3	447	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76940496	76940496	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	24	236	0	ENST00000373344.5:c.597T>A	p.Asn199Lys	p.N199K	ENST00000373344	NM_000489.3	199	aaT/aaA																																																																														
ATRX	546	MSKCC	GRCh37	X	76952119	76952119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	50	266	0	ENST00000373344.5:c.316G>T	p.Asp106Tyr	p.D106Y	ENST00000373344	NM_000489.3	106	Gat/Tat																																																																														
ATRX	546	MSKCC	GRCh37	X	76972640	76972640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	79	340	0	ENST00000373344.5:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000373344	NM_000489.3	34	tCt/tAt																																																																														
BTK	695	MSKCC	GRCh37	X	100609664	100609664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	90	311	1	ENST00000308731.7:c.1585G>T	p.Val529Leu	p.V529L	ENST00000308731	NM_000061.2	529	Gta/Tta																																																																														
BTK	695	MSKCC	GRCh37	X	100609675	100609675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	142	288	0	ENST00000308731.7:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000308731	NM_000061.2	525	cGa/cAa																																																																														
XIAP	331	MSKCC	GRCh37	X	123020344	123020344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	19	308	0	ENST00000355640.3:c.832T>C	p.Ser278Pro	p.S278P	ENST00000355640		278	Tca/Cca																																																																														
XIAP	331	MSKCC	GRCh37	X	123022559	123022559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	33	330	0	ENST00000355640.3:c.968G>T	p.Trp323Leu	p.W323L	ENST00000355640		323	tGg/tTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191795	123191795	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	19	295	0	ENST00000218089.9:c.1384A>G	p.Lys462Glu	p.K462E	ENST00000218089	NM_001042749.1	462	Aag/Gag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195143	123195143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	102	362	0	ENST00000218089.9:c.1486G>A	p.Glu496Lys	p.E496K	ENST00000218089	NM_001042749.1	496	Gaa/Aaa																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123499646	123499646	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	29	455	0	ENST00000371139.4:c.173A>C	p.Gln58Pro	p.Q58P	ENST00000371139	NM_001114937.2	58	cAg/cCg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	130	545	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	115	472	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	106	419	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877366	28877366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	131	428	0	ENST00000282397.4:c.3955G>A	p.Ala1319Thr	p.A1319T	ENST00000282397	NM_002019.4	1319	Gcg/Acg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265313	152265313	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	80	305	0	ENST00000206249.3:c.766C>T	p.Arg256Ter	p.R256*	ENST00000206249	NM_000125.3	256	Cga/Tga																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368252	45368252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	77	390	0	ENST00000262160.6:c.1350C>G	p.Asp450Glu	p.D450E	ENST00000262160	NM_005901.5	450	gaC/gaG																																																																														
APC	324	MSKCC	GRCh37	5	112175551	112175552	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	74	315	0	ENST00000257430.4:c.4260_4261del	p.Ser1421Ter	p.S1421*	ENST00000257430	NM_000038.5	1420	ccCAgt/ccgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133226349	133226349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	176	787	0	ENST00000320574.5:c.3709G>A	p.Glu1237Lys	p.E1237K	ENST00000320574	NM_006231.2	1237	Gag/Aag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972432	32972432	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	83	542	0	ENST00000380152.3:c.9782A>G	p.Asp3261Gly	p.D3261G	ENST00000380152		3261	gAc/gGc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533793	63533793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	177	648	0	ENST00000307078.5:c.1361C>T	p.Ser454Phe	p.S454F	ENST00000307078	NM_004655.3	454	tCt/tTt																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139010	50139010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	214	809	0	ENST00000246792.3:c.553C>A	p.Gln185Lys	p.Q185K	ENST00000246792	NM_006270.3	185	Cag/Aag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662283	227662283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	163	618	0	ENST00000305123.5:c.1172G>C	p.Ser391Thr	p.S391T	ENST00000305123	NM_005544.2	391	aGt/aCt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172008	32172008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	236	670	1	ENST00000375023.3:c.3024C>A	p.Asp1008Glu	p.D1008E	ENST00000375023	NM_004557.3	1008	gaC/gaA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	36	255	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	169	557	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
RB1	5925	MSKCC	GRCh37	13	49039505	49039505	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0046985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	131	217	0	ENST00000267163.4:c.2489+1G>C		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	215	432	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433349	49433349	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	214	497	0	ENST00000301067.7:c.8098C>G	p.Leu2700Val	p.L2700V	ENST00000301067	NM_003482.3	2700	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577529	7577529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	23	924	0	ENST00000269305.4:c.752T>G	p.Ile251Ser	p.I251S	ENST00000269305	NM_001126112.2	251	aTc/aGc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0047009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	204	883	1	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441414	52441414	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0047009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	137	502	0	ENST00000460680.1:c.437+1G>T		p.X146_splice	ENST00000460680	NM_004656.3	146																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	53	355	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	28	318	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685237	86685237	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	22	196	0	ENST00000274376.6:c.2953G>T	p.Glu985Ter	p.E985*	ENST00000274376	NM_002890.2	985	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0047013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	29	352	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0047049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	476	430	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023209	27023225	+	frameshift_variant	Frame_Shift_Del	DEL	GAACGCGGGCCCTAGGC	GAACGCGGGCCCTAGGC	AACG			P-0047049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	62	141	0	ENST00000324856.7:c.315_331delinsAACG	p.Asn106ThrfsTer4	p.N106Tfs*4	ENST00000324856	NM_006015.4	105	ggGAACGCGGGCCCTAGGCcc/ggAACGcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	119	593	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0047055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	203	481	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																														
FH	2271	MSKCC	GRCh37	1	241675310	241675310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	113	355	0	ENST00000366560.3:c.512G>A	p.Ser171Asn	p.S171N	ENST00000366560	NM_000143.3	171	aGc/aAc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479844	67479844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	69	571	0	ENST00000327367.4:c.1151A>G	p.Tyr384Cys	p.Y384C	ENST00000327367	NM_005902.3	384	tAc/tGc																																																																														
MET	4233	MSKCC	GRCh37	7	116409777	116409777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	76	209	0	ENST00000397752.3:c.2662C>A	p.His888Asn	p.H888N	ENST00000397752	NM_000245.2	888	Cat/Aat																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494324	2494324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143033733		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	180	926	3	ENST00000355716.4:c.715G>A	p.Val239Ile	p.V239I	ENST00000355716	NM_003820.2	239	Gtc/Atc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073877	8073877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	53	408	0	ENST00000377482.5:c.782C>T	p.Ala261Val	p.A261V	ENST00000377482	NM_018948.3	261	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023144	27023144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	26	36	0	ENST00000324856.7:c.250G>A	p.Gly84Ser	p.G84S	ENST00000324856	NM_006015.4	84	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023542	27023542	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	176	520	0	ENST00000324856.7:c.651del	p.Asn218ThrfsTer14	p.N218Tfs*14	ENST00000324856	NM_006015.4	216	taC/ta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057739	27057739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	221	820	0	ENST00000324856.7:c.1447C>T	p.Pro483Ser	p.P483S	ENST00000324856	NM_006015.4	483	Cca/Tca																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598940	28598940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	246	981	1	ENST00000253063.3:c.500C>T	p.Ala167Val	p.A167V	ENST00000253063	NM_031459.4	167	gCg/gTg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46733195	46733195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	164	631	0	ENST00000371975.4:c.956G>A	p.Arg319Gln	p.R319Q	ENST00000371975	NM_003579.3	319	cGg/cAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	47	388	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258733	115258733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	95	404	0	ENST00000369535.4:c.49A>G	p.Ser17Gly	p.S17G	ENST00000369535	NM_002524.4	17	Agc/Ggc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115275425	115275425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	38	359	1	ENST00000438362.2:c.988C>T	p.Pro330Ser	p.P330S	ENST00000438362	NM_001242891.1	330	Cca/Tca																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458306	120458306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	166	820	2	ENST00000256646.2:c.7039C>T	p.Arg2347Cys	p.R2347C	ENST00000256646	NM_024408.3	2347	Cgt/Tgt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462204	120462204	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	75	517	0	ENST00000256646.2:c.5512C>T	p.Arg1838Ter	p.R1838*	ENST00000256646	NM_024408.3	1838	Cga/Tga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193181525	193181525	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	19	240	0	ENST00000367435.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000367435	NM_024529.4	358	Cga/Tga																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652330	206652330	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	242	1035	3	ENST00000367120.3:c.1042del	p.Arg348AspfsTer32	p.R348Dfs*32	ENST00000367120	NM_014002.3	346	gCc/gc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	118	619	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332273	70332273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	40	299	2	ENST00000373644.4:c.184del	p.Thr62GlnfsTer13	p.T62Qfs*13	ENST00000373644	NM_030625.2	60	Aaa/aa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	86	438	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741882	17741882	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	38	106	2	ENST00000250003.3:c.557del	p.Pro186ArgfsTer25	p.P186Rfs*25	ENST00000250003	NM_002478.4	185	Ccc/cc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998373	100998373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	49	88	0	ENST00000325455.5:c.1429C>T	p.Pro477Ser	p.P477S	ENST00000325455	NM_001202474.3	477	Ccg/Tcg																																																																														
PGR	5241	MSKCC	GRCh37	11	100999149	100999149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	56	947	1	ENST00000325455.5:c.653C>T	p.Ala218Val	p.A218V	ENST00000325455	NM_001202474.3	218	gCg/gTg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870978	12870978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	151	473	1	ENST00000228872.4:c.205C>T	p.Pro69Ser	p.P69S	ENST00000228872	NM_004064.3	69	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436109	49436109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	100	523	1	ENST00000301067.7:c.5872C>T	p.Arg1958Cys	p.R1958C	ENST00000301067	NM_003482.3	1958	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445500	49445500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	521	760	3	ENST00000301067.7:c.1966delC	p.Leu656CysfsTer274	p.L656Cfs*274	ENST00000301067	NM_003482.3	656	Ctg/tg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486785	56486785	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	167	638	0	ENST00000267101.3:c.1199A>G	p.Gln400Arg	p.Q400R	ENST00000267101	NM_001982.3	400	cAg/cGg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863319	57863319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	243	925	1	ENST00000228682.2:c.1418del	p.Gly473AlafsTer40	p.G473Afs*40	ENST00000228682	NM_005269.2	472	Ggg/gg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112910749	112910749	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	83	319	0	ENST00000351677.2:c.758C>T	p.Thr253Ile	p.T253I	ENST00000351677	NM_002834.3	253	aCa/aTa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431332	121431332	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	137	468	0	ENST00000257555.6:c.536A>G	p.His179Arg	p.H179R	ENST00000257555		179	cAt/cGt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435295	121435296	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	245	1032	0	ENST00000257555.6:c.1330_1331del	p.Gln444GlufsTer104	p.Q444Efs*104	ENST00000257555		443	gCA/g																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557684	21557684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	151	808	0	ENST00000382592.4:c.2161G>A	p.Ala721Thr	p.A721T	ENST00000382592	NM_014572.2	721	Gcc/Acc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608318	28608318	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	46	439	1	ENST00000241453.7:c.1738C>T	p.Gln580Ter	p.Q580*	ENST00000241453	NM_004119.2	580	Cag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911074	32911074	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	19	272	0	ENST00000380152.3:c.2588delA	p.Asn863IlefsTer11	p.N863Ifs*11	ENST00000380152		861	cAa/ca																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435129	110435129	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	295	782	4	ENST00000375856.3:c.3272del	p.Pro1091ArgfsTer15	p.P1091Rfs*15	ENST00000375856	NM_003749.2	1091	cCg/cg																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871728	35871728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	177	757	0	ENST00000216797.5:c.778C>T	p.Arg260Cys	p.R260C	ENST00000216797	NM_020529.2	260	Cgc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	41961687	41961687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	53	458	0	ENST00000219905.7:c.595C>T	p.Arg199Cys	p.R199C	ENST00000219905	NM_001164273.1	199	Cgt/Tgt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708603	43708603	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	37	536	0	ENST00000382044.4:c.4693G>T	p.Gly1565Ter	p.G1565*	ENST00000382044	NM_001141980.1	1565	Gga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748607	43748608	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	83	750	0	ENST00000382044.4:c.2198dup	p.Gln734SerfsTer7	p.Q734Sfs*7	ENST00000382044	NM_001141980.1	733	cct/ccCt																																																																														
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	50	333	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774194	66774194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	214	1101	3	ENST00000307102.5:c.670G>A	p.Val224Met	p.V224M	ENST00000307102	NM_002755.3	224	Gtg/Atg																																																																														
BLM	641	MSKCC	GRCh37	15	91303500	91303500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	25	258	1	ENST00000355112.3:c.1211G>A	p.Arg404Gln	p.R404Q	ENST00000355112	NM_000057.2	404	cGg/cAg																																																																														
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	28	185	0	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456274	99456274	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	49	286	0	ENST00000268035.6:c.1591C>T	p.Pro531Ser	p.P531S	ENST00000268035	NM_000875.3	531	Ccc/Tcc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	222	838	1	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	146	866	4	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647564	3647564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	161	956	2	ENST00000294008.3:c.1499C>T	p.Thr500Met	p.T500M	ENST00000294008	NM_032444.2	500	aCg/aTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032118	10032118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	58	670	0	ENST00000330684.3:c.705G>T	p.Glu235Asp	p.E235D	ENST00000330684	NM_001134407.1	235	gaG/gaT																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644874	67644874	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	164	632	0	ENST00000264010.4:c.143del	p.Gly48ValfsTer14	p.G48Vfs*14	ENST00000264010	NM_006565.3	47	Ggg/gg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992127	72992127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	196	939	2	ENST00000268489.5:c.1918G>A	p.Val640Met	p.V640M	ENST00000268489	NM_006885.3	640	Gtg/Atg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89335041	89335041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	138	434	0	ENST00000301030.4:c.7837G>A	p.Ala2613Thr	p.A2613T	ENST00000301030	NM_001256183.1	2613	Gcc/Acc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15967385	15967385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	195	494	0	ENST00000268712.3:c.5218C>T	p.Pro1740Ser	p.P1740S	ENST00000268712	NM_006311.3	1740	Cca/Tca																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	166	804	18	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131231	17131231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	301	1033	1	ENST00000285071.4:c.221C>A	p.Pro74Gln	p.P74Q	ENST00000285071	NM_144997.5	74	cCg/cAg																																																																														
RARA	5914	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	163	807	3	ENST00000254066.5:c.1319delC	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40457683	40457683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	207	840	0	ENST00000345506.4:c.1436C>T	p.Thr479Met	p.T479M	ENST00000345506	NM_003152.3	479	aCg/aTg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40865350	40865350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	183	685	0	ENST00000428826.2:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000428826		361	Cgc/Tgc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58711260	58711260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	59	468	1	ENST00000305921.3:c.748C>T	p.Arg250Ter	p.R250*	ENST00000305921	NM_003620.3	250	Cga/Tga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554517	63554518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	186	808	0	ENST00000307078.5:c.221dup	p.Leu75SerfsTer66	p.L75Sfs*66	ENST00000307078	NM_004655.3	74	cct/ccCt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	26	35	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78858943	78858943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	134	672	0	ENST00000306801.3:c.1978C>T	p.Arg660Trp	p.R660W	ENST00000306801	NM_020761.2	660	Cgg/Tgg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622410	1622410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	191	682	0	ENST00000344749.5:c.554A>G	p.Tyr185Cys	p.Y185C	ENST00000344749	NM_001136139.2	185	tAc/tGc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223460	2223460	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	123	614	0	ENST00000398665.3:c.3571T>G	p.Ser1191Ala	p.S1191A	ENST00000398665	NM_032482.2	1191	Tct/Gct																																																																														
GNA11	2767	MSKCC	GRCh37	19	3113445	3113445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	209	783	0	ENST00000078429.4:c.439C>T	p.Arg147Cys	p.R147C	ENST00000078429	NM_002067.2	147	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214618	5214618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	252	1061	0	ENST00000357368.4:c.4448G>A	p.Arg1483Gln	p.R1483Q	ENST00000357368	NM_002850.3	1483	cGg/cAg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	130	730	3	ENST00000340748.4:c.2152delA	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10270561	10270561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	268	871	0	ENST00000340748.4:c.1079T>C	p.Leu360Pro	p.L360P	ENST00000340748		360	cTg/cCg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11024656	11024656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	154	719	0	ENST00000327064.4:c.773C>T	p.Pro258Leu	p.P258L	ENST00000327064	NM_199141.1	258	cCc/cTc																																																																														
CALR	811	MSKCC	GRCh37	19	13050873	13050873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	94	494	0	ENST00000316448.5:c.404A>G	p.Asp135Gly	p.D135G	ENST00000316448	NM_004343.3	135	gAc/gGc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952540	17952540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	226	824	1	ENST00000458235.1:c.893T>C	p.Ile298Thr	p.I298T	ENST00000458235	NM_000215.3	298	aTc/aCc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214866	36214866	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	265	992	7	ENST00000222270.7:c.3296del	p.Gly1099AlafsTer83	p.G1099Afs*83	ENST00000222270	NM_014727.1	1098	Ggg/gg																																																																														
AXL	558	MSKCC	GRCh37	19	41737127	41737127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	295	1050	2	ENST00000301178.4:c.707G>A	p.Arg236His	p.R236H	ENST00000301178	NM_021913.4	236	cGc/cAc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	260	1187	3	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
CIC	23152	MSKCC	GRCh37	19	42795609	42795609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	250	1059	3	ENST00000575354.2:c.2694del	p.Ala900ProfsTer24	p.A900Pfs*24	ENST00000575354	NM_015125.3	897	Ccc/cc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856520	45856520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	210	901	1	ENST00000391945.4:c.1738G>A	p.Ala580Thr	p.A580T	ENST00000391945	NM_000400.3	580	Gcc/Acc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902293	50902293	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	276	1022	0	ENST00000440232.2:c.185T>C	p.Leu62Pro	p.L62P	ENST00000440232	NM_002691.3	62	cTg/cCg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	215	1073	5	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
ALK	238	MSKCC	GRCh37	2	30142900	30142900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	258	1002	0	ENST00000389048.3:c.626G>A	p.Arg209His	p.R209H	ENST00000389048	NM_004304.4	209	cGc/cAc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46574172	46574172	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	195	774	1	ENST00000263734.3:c.187T>A	p.Phe63Ile	p.F63I	ENST00000263734	NM_001430.4	63	Ttc/Atc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607783	46607783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	270	1013	2	ENST00000263734.3:c.1972C>T	p.Arg658Cys	p.R658C	ENST00000263734	NM_001430.4	658	Cgc/Tgc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630543	47630543	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	123	784	0	ENST00000233146.2:c.211+2T>G		p.X71_splice	ENST00000233146	NM_000251.2	71																																																																															
INHA	3623	MSKCC	GRCh37	2	220437288	220437288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	228	1178	0	ENST00000243786.2:c.197del	p.Gly66AlafsTer61	p.G66Afs*61	ENST00000243786	NM_002191.3	64	ctG/ct																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662137	227662137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	207	833	0	ENST00000305123.5:c.1318A>G	p.Ser440Gly	p.S440G	ENST00000305123	NM_005544.2	440	Agt/Ggt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	42	897	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662692	227662692	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	209	915	0	ENST00000305123.5:c.763G>T	p.Glu255Ter	p.E255*	ENST00000305123	NM_005544.2	255	Gag/Tag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	79	387	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275688	41275688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	128	505	0	ENST00000349496.5:c.1583G>A	p.Arg528His	p.R528H	ENST00000349496	NM_001904.3	528	cGt/cAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163320	47163320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	36	333	0	ENST00000409792.3:c.2806C>A	p.Leu936Ile	p.L936I	ENST00000409792	NM_014159.6	936	Ctt/Att																																																																														
SETD2	29072	MSKCC	GRCh37	3	47205386	47205386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	202	467	0	ENST00000409792.3:c.29C>T	p.Pro10Leu	p.P10L	ENST00000409792	NM_014159.6	10	cCg/cTg																																																																														
RHOA	387	MSKCC	GRCh37	3	49412907	49412907	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	83	689	0	ENST00000418115.1:c.116T>C	p.Phe39Ser	p.F39S	ENST00000418115	NM_001664.2	39	tTt/tCt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52661367	52661367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	48	325	1	ENST00000394830.3:c.1463C>T	p.Ala488Val	p.A488V	ENST00000394830	NM_018313.4	488	gCc/gTc																																																																														
ATR	545	MSKCC	GRCh37	3	142272521	142272521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	66	487	0	ENST00000350721.4:c.2594T>C	p.Leu865Pro	p.L865P	ENST00000350721	NM_001184.3	865	cTg/cCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	63	517	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
BCL6	604	MSKCC	GRCh37	3	187447282	187447284	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	142	711	0	ENST00000232014.4:c.909_911del	p.Glu304del	p.E304del	ENST00000232014	NM_001130845.1	303	gaAGAg/gag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920312	1920312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	178	701	0	ENST00000382891.5:c.1372T>C	p.Ser458Pro	p.S458P	ENST00000382891	NM_133335.3	458	Tcc/Ccc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980559	1980560	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	206	869	0	ENST00000382891.5:c.4027_4028del	p.Pro1343ArgfsTer91	p.P1343Rfs*91	ENST00000382891	NM_133335.3	1341	CCc/c																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197733	66197733	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	57	388	0	ENST00000273854.3:c.2966del	p.Asn989MetfsTer12	p.N989Mfs*12	ENST00000273854	NM_004439.5	989	aAt/at																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467482	66467482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	61	377	0	ENST00000273854.3:c.787G>A	p.Val263Ile	p.V263I	ENST00000273854	NM_004439.5	263	Gtc/Atc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526601	31526601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	113	426	0	ENST00000344624.3:c.439C>T	p.Pro147Ser	p.P147S	ENST00000344624		147	Ccc/Tcc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35857099	35857100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	26	247	0	ENST00000303115.3:c.24dup	p.Gly9TrpfsTer29	p.G9Wfs*29	ENST00000303115	NM_002185.3	7	act/acTt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	28	214	2	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873708	35873708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	17	328	0	ENST00000303115.3:c.664C>T	p.Pro222Ser	p.P222S	ENST00000303115	NM_002185.3	222	Cca/Tca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38964892	38964892	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	17	131	0	ENST00000357387.3:c.1400+2T>C		p.X467_splice	ENST00000357387	NM_152756.3	467																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755537	57755537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	162	717	0	ENST00000274289.3:c.250C>G	p.Arg84Gly	p.R84G	ENST00000274289	NM_006622.3	84	Cgg/Ggg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	110	441	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	37	336	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	194	336	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	66	457	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32165354	32165354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	186	997	0	ENST00000375023.3:c.4774A>G	p.Met1592Val	p.M1592V	ENST00000375023	NM_004557.3	1592	Atg/Gtg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32182015	32182016	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	172	838	1	ENST00000375023.3:c.2037_2038dup	p.Asp680ValfsTer14	p.D680Vfs*14	ENST00000375023	NM_004557.3	680	gac/gTGac																																																																														
SESN1	27244	MSKCC	GRCh37	6	109322667	109322667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	50	416	1	ENST00000436639.2:c.370G>A	p.Ala124Thr	p.A124T	ENST00000436639	NM_014454.2	124	Gca/Aca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710594	117710594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138412232		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	94	334	0	ENST00000368508.3:c.1678C>T	p.Arg560Cys	p.R560C	ENST00000368508	NM_002944.2	560	Cgc/Tgc																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983227	149983228	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	31	407	0	ENST00000253339.5:c.3030dupT	p.Lys1011Ter	p.K1011*	ENST00000253339		1010	-/T																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	403	763	8	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2977573	2977573	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	369	832	1	ENST00000396946.4:c.1111C>T	p.Gln371Ter	p.Q371*	ENST00000396946	NM_032415.4	371	Cag/Tag																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207409	29207409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	233	659	0	ENST00000240100.2:c.387G>T	p.Gln129His	p.Q129H	ENST00000240100	NM_001394.6	129	caG/caT																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271528	38271528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	138	899	1	ENST00000425967.3:c.2293C>T	p.Arg765Trp	p.R765W	ENST00000425967	NM_001174067.1	765	Cgg/Tgg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737323	145737323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	312	1129	1	ENST00000428558.2:c.3364G>A	p.Ala1122Thr	p.A1122T	ENST00000428558	NM_004260.3	1122	Gca/Aca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	167	853	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
ABL1	25	MSKCC	GRCh37	9	133761012	133761012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	220	891	0	ENST00000318560.5:c.3335A>G	p.Gln1112Arg	p.Q1112R	ENST00000318560	NM_005157.4	1112	cAg/cGg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137321023	137321023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	297	1095	2	ENST00000481739.1:c.980C>T	p.Ala327Val	p.A327V	ENST00000481739	NM_002957.4	327	gCc/gTc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815530	139815530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	219	931	2	ENST00000247668.2:c.1001C>T	p.Ala334Val	p.A334V	ENST00000247668	NM_021138.3	334	gCg/gTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70346924	70346924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	226	372	0	ENST00000374080.3:c.2791C>T	p.Arg931Trp	p.R931W	ENST00000374080		931	Cgg/Tgg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0047056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	208	1048	7	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0047073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	160	411	0				ENST00000310581	NM_198253.2																																																																																
TSC2	7249	MSKCC	GRCh37	16	2100485	2100485	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0047073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	199	384	0	ENST00000219476.3:c.223G>T	p.Glu75Ter	p.E75*	ENST00000219476	NM_000548.3	75	Gag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603116	48603116	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	219	466	0	ENST00000342988.3:c.1417G>T	p.Gly473Ter	p.G473*	ENST00000342988	NM_005359.5	473	Gga/Tga																																																																														
VHL	7428	MSKCC	GRCh37	3	10183707	10183731	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGGCCCGTGCTGCGCTCGGTGAA	CGCGGCCCGTGCTGCGCTCGGTGAA	-			P-0047074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	136	733	0	ENST00000256474.2:c.177_201del	p.Pro61AlafsTer90	p.P61Afs*90	ENST00000256474	NM_000551.3	59	cCGCGGCCCGTGCTGCGCTCGGTGAAc/cc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441189	52441189	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0047074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	78	348	0	ENST00000460680.1:c.580+1G>T		p.X194_splice	ENST00000460680	NM_004656.3	194																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	86	520	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437508	49437508	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	75	605	0	ENST00000301067.7:c.5377G>C	p.Gly1793Arg	p.G1793R	ENST00000301067	NM_003482.3	1793	Ggg/Cgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	43	354	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189926	66189926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	27	249	0	ENST00000273854.3:c.3020G>T	p.Arg1007Leu	p.R1007L	ENST00000273854	NM_004439.5	1007	cGg/cTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28908218	28908218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	40	416	0	ENST00000282397.4:c.2537C>T	p.Ala846Val	p.A846V	ENST00000282397	NM_002019.4	846	gCa/gTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290896	15290896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	79	807	0	ENST00000263388.2:c.3314G>T	p.Gly1105Val	p.G1105V	ENST00000263388	NM_000435.2	1105	gGc/gTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18961615	18961615	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	78	686	0	ENST00000262803.5:c.748G>T	p.Glu250Ter	p.E250*	ENST00000262803	NM_002911.3	250	Gag/Tag																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271387	26271387	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	33	559	0	ENST00000305910.3:c.226G>C	p.Ala76Pro	p.A76P	ENST00000305910	NM_003534.2	76	Gct/Cct																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005888	69005888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	35	383	0	ENST00000288368.4:c.2299G>A	p.Asp767Asn	p.D767N	ENST00000288368	NM_024870.2	767	Gac/Aac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524949	8524949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	36	341	0	ENST00000356435.5:c.655G>C	p.Ala219Pro	p.A219P	ENST00000356435		219	Gct/Cct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	194	353	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CD79B	974	MSKCC	GRCh37	17	62007443	62007443	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	346	600	0	ENST00000392795.3:c.424C>T	p.Arg142Ter	p.R142*	ENST00000392795	NM_001039933.1	142	Cga/Tga																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206653437	206653437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	479	654	2	ENST00000367120.3:c.1321C>T	p.Arg441Trp	p.R441W	ENST00000367120	NM_014002.3	441	Cgg/Tgg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911266	29911266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	50	471	3	ENST00000376809.5:c.565G>A	p.Val189Met	p.V189M	ENST00000376809	NM_002116.7	189	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579401	7579401	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	400	799	0	ENST00000269305.4:c.286del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	Tct/ct																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135303	30135303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	158	355	0	ENST00000331968.5:c.515G>A	p.Arg172His	p.R172H	ENST00000331968	NM_002742.2	172	cGt/cAt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59857710	59857710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	70	325	0	ENST00000259008.2:c.1847C>T	p.Thr616Ile	p.T616I	ENST00000259008	NM_032043.2	616	aCa/aTa																																																																														
MET	4233	MSKCC	GRCh37	7	116436018	116436018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	291	581	1	ENST00000397752.3:c.4013C>T	p.Ser1338Leu	p.S1338L	ENST00000397752	NM_000245.2	1338	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0047089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	137	686	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
RFWD2	0	MSKCC	GRCh37	1	176145102	176145102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	45	338	0	ENST00000367669.3:c.509G>A	p.Cys170Tyr	p.C170Y	ENST00000367669	NM_022457.5	170	tGt/tAt																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67197025	67197025	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	43	449	0	ENST00000312629.5:c.268A>G	p.Thr90Ala	p.T90A	ENST00000312629	NM_003952.2	90	Acc/Gcc																																																																														
ATM	472	MSKCC	GRCh37	11	108126983	108126996	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGGGTGTCCTTG	GGTGGGTGTCCTTG	-			P-0047089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	40	523	0	ENST00000278616.4:c.2167_2180del	p.Val723LeufsTer10	p.V723Lfs*10	ENST00000278616	NM_000051.3	722	ttGGTGGGTGTCCTTGgc/ttgc																																																																														
CBL	867	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	73	224	0	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475063	40475063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	312	683	0	ENST00000264657.5:c.1847A>G	p.Glu616Gly	p.E616G	ENST00000264657	NM_139276.2	616	gAa/gGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	96	442	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	96	442	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	96	442	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133553	55133553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	102	504	1	ENST00000257290.5:c.857G>A	p.Gly286Glu	p.G286E	ENST00000257290	NM_006206.4	286	gGa/gAa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	365	894	0	ENST00000171111.5:c.959G>C	p.Arg320Pro	p.R320P	ENST00000171111	NM_203500.1	320	cGg/cCg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221293	1221293	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	384	843	0	ENST00000326873.7:c.816C>G	p.Tyr272Ter	p.Y272*	ENST00000326873	NM_000455.4	272	taC/taG																																																																														
WT1	7490	MSKCC	GRCh37	11	32450100	32450101	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	341	797	1	ENST00000332351.3:c.711_712del	p.Gln238ValfsTer9	p.Q238Vfs*9	ENST00000332351	NM_024426.4	237	gcGCag/gcag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096367	178096367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	176	462	0	ENST00000397062.3:c.964C>A	p.Leu322Ile	p.L322I	ENST00000397062	NM_006164.4	322	Cta/Ata																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038815	47038824	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTACCAG	GCCCTACCAG	-			P-0047090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	149	525	0	ENST00000329236.7:c.595_604del	p.Tyr199ArgfsTer29	p.Y199Rfs*29	ENST00000329236	NM_001204466.1	197	caGCCCTACCAG/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	672	792	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	492	764	1	ENST00000344626.4:c.3484G>T	p.Gly1162Cys	p.G1162C	ENST00000344626	NM_003072.3	1162	Ggc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256235	16256236	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	137	540	0	ENST00000375759.3:c.3502_3503del	p.Ser1168LeufsTer10	p.S1168Lfs*10	ENST00000375759	NM_015001.2	1167	cAG/c																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858797	9858797	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	151	227	0	ENST00000330684.3:c.2604C>A	p.Tyr868Ter	p.Y868*	ENST00000330684	NM_001134407.1	868	taC/taA																																																																														
PMS2	5395	MSKCC	GRCh37	7	6038842	6038842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	66	624	0	ENST00000265849.7:c.602G>A	p.Ser201Asn	p.S201N	ENST00000265849	NM_000535.5	201	aGt/aAt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851197	63851197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	670	687	0	ENST00000279873.7:c.1975G>A	p.Asp659Asn	p.D659N	ENST00000279873	NM_032199.2	659	Gac/Aac																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484185	50484185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	192	566	0	ENST00000394963.4:c.1035G>T	p.Gln345His	p.Q345H	ENST00000394963	NM_003076.4	345	caG/caT																																																																														
POLE	5426	MSKCC	GRCh37	12	133254239	133254239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	398	542	0	ENST00000320574.5:c.645G>T	p.Leu215Phe	p.L215F	ENST00000320574	NM_006231.2	215	ttG/ttT																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96930986	96930986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	239	583	0	ENST00000258439.3:c.134G>T	p.Cys45Phe	p.C45F	ENST00000258439	NM_001193304.2	45	tGc/tTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41527460	41527460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	208	621	0	ENST00000263253.7:c.1351C>T	p.Pro451Ser	p.P451S	ENST00000263253	NM_001429.3	451	Ccc/Tcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524723	187524723	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	249	719	0	ENST00000441802.2:c.10957G>T	p.Glu3653Ter	p.E3653*	ENST00000441802	NM_005245.3	3653	Gaa/Taa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891316	101891316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	359	508	1	ENST00000374994.4:c.277G>T	p.Gly93Trp	p.G93W	ENST00000374994	NM_004612.2	93	Ggg/Tgg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934349	39934349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	252	335	0	ENST00000378444.4:c.250G>T	p.Val84Phe	p.V84F	ENST00000378444	NM_001123385.1	84	Gtc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	124	243	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32968840	32968840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	49	164	0	ENST00000380152.3:c.9271G>A	p.Val3091Ile	p.V3091I	ENST00000380152		3091	Gtc/Atc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670641	134670641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	103	523	2	ENST00000398015.3:c.552G>T	p.Met184Ile	p.M184I	ENST00000398015	NM_004441.4	184	atG/atT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040923	47040923	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	211	309	1	ENST00000329236.7:c.1219G>T	p.Glu407Ter	p.E407*	ENST00000329236	NM_001204466.1	407	Gag/Tag																																																																														
NUF2	83540	MSKCC	GRCh37	1	163315498	163315498	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	55	381	2	ENST00000271452.3:c.838G>T	p.Gly280Ter	p.G280*	ENST00000271452	NM_145697.2	280	Gga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	86	388	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476310	88476310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	77	639	0	ENST00000360948.2:c.1822G>T	p.Gly608Cys	p.G608C	ENST00000360948	NM_001012338.2	608	Ggc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892139	9892139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	112	476	1	ENST00000330684.3:c.2351G>T	p.Gly784Val	p.G784V	ENST00000330684	NM_001134407.1	784	gGt/gTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1207009	1207009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	227	770	0	ENST00000326873.7:c.97G>T	p.Glu33Ter	p.E33*	ENST00000326873	NM_000455.4	33	Gag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602746	10602746	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	356	810	0	ENST00000171111.5:c.832C>G	p.Pro278Ala	p.P278A	ENST00000171111	NM_203500.1	278	Ccg/Gcg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578332	212578332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	44	372	0	ENST00000342788.4:c.925C>A	p.Pro309Thr	p.P309T	ENST00000342788	NM_005235.2	309	Cct/Act																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	39	335	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390834	139390835	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	147	943	3	ENST00000277541.6:c.7356_7357delinsTT	p.Val2453Leu	p.V2453L	ENST00000277541	NM_017617.3	2452	gcGGtg/gcTTtg																																																																														
ATRX	546	MSKCC	GRCh37	X	76813074	76813074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0047108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	46	495	0	ENST00000373344.5:c.6547C>G	p.Gln2183Glu	p.Q2183E	ENST00000373344	NM_000489.3	2183	Cag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	212	657	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48032847	48032847	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0047114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	108	310	1	ENST00000234420.5:c.3646+1G>A		p.X1216_splice	ENST00000234420	NM_000179.2	1216																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	52	428	2	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	11	250	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	15	353	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	20	580	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739030	145739030	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199562131		P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	44	739	0	ENST00000428558.2:c.2125C>T	p.Arg709Trp	p.R709W	ENST00000428558	NM_004260.3	709	Cgg/Tgg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	70	1009	0	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851848	134851848	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	38	732	0	ENST00000398015.3:c.1259del	p.Pro420HisfsTer28	p.P420Hfs*28	ENST00000398015	NM_004441.4	418	ttC/tt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	48	552	2	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	24	446	3	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	33	396	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11182145	11182145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	45	780	0	ENST00000361445.4:c.6701C>T	p.Ser2234Leu	p.S2234L	ENST00000361445	NM_004958.3	2234	tCg/tTg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910708	29910708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	71	1131	0	ENST00000376809.5:c.248A>G	p.Tyr83Cys	p.Y83C	ENST00000376809	NM_002116.7	83	tAt/tGt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619216	1619216	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	52	761	0	ENST00000344749.5:c.1344del	p.Glu449ArgfsTer37	p.E449Rfs*37	ENST00000344749	NM_001136139.2	448	ccC/cc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	77	751	5	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	51	873	4	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803571	1803571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	26	477	1	ENST00000260795.2:c.749C>T	p.Pro250Leu	p.P250L	ENST00000260795		250	cCg/cTg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599271	28599271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1457528646		P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	53	927	0	ENST00000253063.3:c.722del	p.Pro241GlnfsTer6	p.P241Qfs*6	ENST00000253063	NM_031459.4	239	agC/ag																																																																														
CENPA	1058	MSKCC	GRCh37	2	27015025	27015025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	30	434	0	ENST00000335756.4:c.127C>T	p.Arg43Trp	p.R43W	ENST00000335756	NM_001809.3	43	Cgg/Tgg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129351	64129351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	61	983	2	ENST00000334205.4:c.788del	p.Pro263LeufsTer112	p.P263Lfs*112	ENST00000334205	NM_003942.2	261	ttC/tt																																																																														
TET2	54790	MSKCC	GRCh37	4	106197435	106197435	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	30	338	0	ENST00000380013.4:c.5772del	p.Ala1925ProfsTer25	p.A1925Pfs*25	ENST00000380013	NM_001127208.2	1923	gAa/ga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55214313	55214313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	49	681	0	ENST00000275493.2:c.439G>A	p.Ala147Thr	p.A147T	ENST00000275493	NM_005228.3	147	Gcc/Acc																																																																														
SMO	6608	MSKCC	GRCh37	7	128846014	128846014	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	39	647	0	ENST00000249373.3:c.944T>C	p.Val315Ala	p.V315A	ENST00000249373	NM_005631.4	315	gTc/gCc																																																																														
ATM	472	MSKCC	GRCh37	11	108183191	108183191	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	16	249	0	ENST00000278616.4:c.5977del	p.Ser1993ValfsTer7	p.S1993Vfs*7	ENST00000278616	NM_000051.3	1991	gAa/ga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434905	110434905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	44	688	1	ENST00000375856.3:c.3496G>A	p.Ala1166Thr	p.A1166T	ENST00000375856	NM_003749.2	1166	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1278755	1278755	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	42	721	1	ENST00000310581.5:c.2286+1G>A		p.X762_splice	ENST00000310581	NM_198253.2	762																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187202	11187202	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	23	544	0	ENST00000361445.4:c.6217-1G>T		p.X2073_splice	ENST00000361445	NM_004958.3	2073																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206652414	206652414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	43	779	3	ENST00000367120.3:c.1121C>T	p.Thr374Met	p.T374M	ENST00000367120	NM_014002.3	374	aCg/aTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360585	118360587	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	23	441	0	ENST00000534358.1:c.4566_4568del	p.Lys1523del	p.K1523del	ENST00000534358	NM_005933.3	1520	AAG/-																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896548	78896548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	57	826	2	ENST00000306801.3:c.2545C>T	p.Arg849Cys	p.R849C	ENST00000306801	NM_020761.2	849	Cgc/Tgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100034	11100034	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	49	755	0	ENST00000344626.4:c.1160A>G	p.Asn387Ser	p.N387S	ENST00000344626	NM_003072.3	387	aAc/aGc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279585	18279585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	48	820	0	ENST00000222254.8:c.1858C>T	p.Arg620Cys	p.R620C	ENST00000222254	NM_005027.3	620	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213366	36213366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	54	978	1	ENST00000222270.7:c.2563C>T	p.Arg855Trp	p.R855W	ENST00000222270	NM_014727.1	855	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223619	36223619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	68	1079	2	ENST00000222270.7:c.6169C>T	p.Arg2057Cys	p.R2057C	ENST00000222270	NM_014727.1	2057	Cgc/Tgc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663357	227663357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	63	663	0	ENST00000305123.5:c.98G>A	p.Arg33His	p.R33H	ENST00000305123	NM_005544.2	33	cGc/cAc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54945676	54945677	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	20	373	0	ENST00000312783.6:c.893dup	p.Glu299Ter	p.E299*	ENST00000312783	NM_198436.1	298	cct/ccCt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532542	187532543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	15	306	0	ENST00000441802.2:c.9850dup	p.Thr3284AsnfsTer8	p.T3284Nfs*8	ENST00000441802	NM_005245.3	3284	aca/aAca																																																																														
APC	324	MSKCC	GRCh37	5	112116551	112116551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	15	376	1	ENST00000257430.4:c.596C>T	p.Ala199Val	p.A199V	ENST00000257430	NM_000038.5	199	gCg/gTg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517531	176517531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	47	1000	1	ENST00000292408.4:c.232C>T	p.Arg78Cys	p.R78C	ENST00000292408	NM_213647.1	78	Cgt/Tgt																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805885	32805885	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	50	944	0	ENST00000374899.4:c.126del	p.Thr43ProfsTer11	p.T43Pfs*11	ENST00000374899	NM_018833.2	42	ggG/gg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737596	145737596	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	49	1017	0	ENST00000428558.2:c.3167A>G	p.Tyr1056Cys	p.Y1056C	ENST00000428558	NM_004260.3	1056	tAt/tGt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041199	47041199	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0047121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	24	447	0	ENST00000329236.7:c.1393A>G	p.Thr465Ala	p.T465A	ENST00000329236	NM_001204466.1	465	Acc/Gcc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0047123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	194	374	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0047123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	290	663	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
PALB2	79728	MSKCC	GRCh37	16	23637631	23637631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45476495		P-0047123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	263	571	1	ENST00000261584.4:c.2674G>A	p.Glu892Lys	p.E892K	ENST00000261584	NM_024675.3	892	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578189	7578190	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0047123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	344	656	0	ENST00000269305.4:c.659dup	p.Tyr220Ter	p.Y220*	ENST00000269305	NM_001126112.2	220	tat/taAt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46588099	46588100	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0047123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	255	719	0	ENST00000263734.3:c.651_652del	p.Leu218AlafsTer9	p.L218Afs*9	ENST00000263734	NM_001430.4	217	CCc/c																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192550	138192550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	99	398	0	ENST00000237289.4:c.186G>T	p.Glu62Asp	p.E62D	ENST00000237289	NM_001270507.1	62	gaG/gaT																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0047124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	26	578	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0047124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	47	803	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760817	59760817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0047124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	66	496	2	ENST00000259008.2:c.3590G>T	p.Gly1197Val	p.G1197V	ENST00000259008	NM_032043.2	1197	gGa/gTa																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430296	181430296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0047124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	33	377	0	ENST00000325404.1:c.148G>T	p.Val50Leu	p.V50L	ENST00000325404	NM_003106.3	50	Gtg/Ttg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0017386-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			438	1229	407	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577088	7577088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017386-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			264	922	809	0	ENST00000269305.4:c.850A>C	p.Thr284Pro	p.T284P	ENST00000269305	NM_001126112.2	284	Aca/Cca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521327	8521327	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017386-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			120	283	389	0	ENST00000356435.5:c.911C>G	p.Ala304Gly	p.A304G	ENST00000356435		304	gCt/gGt																																																																														
INSR	3643	MSKCC	GRCh37	19	7143087	7143087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017386-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			921	252	656	0	ENST00000302850.5:c.2282G>A	p.Arg761His	p.R761H	ENST00000302850	NM_000208.2	761	cGc/cAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402238	402238	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017386-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			194	204	511	0	ENST00000399788.2:c.4553G>C	p.Gly1518Ala	p.G1518A	ENST00000399788	NM_001042603.1	1518	gGa/gCa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021110	31021110	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017386-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			733	90	542	0	ENST00000375687.4:c.1109C>A	p.Ser370Ter	p.S370*	ENST00000375687	NM_015338.5	370	tCa/tAa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62320870	62320870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017386-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	367	1095	0	ENST00000508582.2:c.1966G>C	p.Asp656His	p.D656H	ENST00000508582		656	Gac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	85	349	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579329	7579332	+	frameshift_variant	Frame_Shift_Del	DEL	TGGC	TGGC	-			P-0039285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			703	69	602	0	ENST00000269305.4:c.355_358del	p.Ala119SerfsTer3	p.A119Sfs*3	ENST00000269305	NM_001126112.2	119	GCCAag/ag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215553	5215553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	100	851	1	ENST00000357368.4:c.4150C>T	p.Arg1384Trp	p.R1384W	ENST00000357368	NM_002850.3	1384	Cgg/Tgg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026139	71026139	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	32	344	0	ENST00000318789.4:c.1483T>A	p.Phe495Ile	p.F495I	ENST00000318789	NM_032682.5	495	Ttc/Atc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157256651	157256651	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	35	254	0	ENST00000346085.5:c.1978G>T	p.Gly660Ter	p.G660*	ENST00000346085	NM_020732.3	660	Gga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858349	9858349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	83	434	3	ENST00000330684.3:c.3052G>A	p.Val1018Met	p.V1018M	ENST00000330684	NM_001134407.1	1018	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0047077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	118	511	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0047077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	90	424	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0047077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	374	380	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0047077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	228	883	0	ENST00000269305.4:c.421T>G	p.Cys141Gly	p.C141G	ENST00000269305	NM_001126112.2	141	Tgc/Ggc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502662	149502662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0047077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	155	700	0	ENST00000261799.4:c.2126G>A	p.Arg709His	p.R709H	ENST00000261799	NM_002609.3	709	cGc/cAc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25466769	25466769	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0047077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	290	639	0	ENST00000264709.3:c.1934C>G	p.Thr645Arg	p.T645R	ENST00000264709	NM_175629.2	645	aCa/aGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0047100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	341	665	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0047100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	46	176	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268156	153268156	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0047100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	195	332	0	ENST00000281708.4:c.652C>T	p.Gln218Ter	p.Q218*	ENST00000281708	NM_033632.3	218	Caa/Taa																																																																														
INSR	3643	MSKCC	GRCh37	19	7117083	7117083	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs52826008		P-0047100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	193	422	0	ENST00000302850.5:c.4133G>A	p.Arg1378Gln	p.R1378Q	ENST00000302850	NM_000208.2	1378	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112173665	112173665	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0047100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	73	242	0	ENST00000257430.4:c.2374A>T	p.Lys792Ter	p.K792*	ENST00000257430	NM_000038.5	792	Aag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0047106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	31	460	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			565	1455	750	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			362	336	951	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			686	1646	768	0	ENST00000269571.5:c.829G>T	p.Asp277Tyr	p.D277Y	ENST00000269571		277	Gac/Tac																																																																														
SDHA	6389	MSKCC	GRCh37	5	224496	224496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			177	34	193	0	ENST00000264932.6:c.172G>C	p.Val58Leu	p.V58L	ENST00000264932	NM_004168.2	58	Gtg/Ctg																																																																														
PARK2	0	MSKCC	GRCh37	6	162864368	162864368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			280	274	456	0	ENST00000366898.1:c.145G>A	p.Glu49Lys	p.E49K	ENST00000366898	NM_004562.2	49	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140534564	140534564	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			291	122	377	0	ENST00000288602.6:c.349A>T	p.Met117Leu	p.M117L	ENST00000288602	NM_004333.4	117	Atg/Ttg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953228	81953228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			261	89	371	0	ENST00000359376.3:c.2194C>T	p.Arg732Cys	p.R732C	ENST00000359376	NM_002661.3	732	Cgc/Tgc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38967262	38967262	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			210	37	200	0	ENST00000357387.3:c.1218+1G>T		p.X406_splice	ENST00000357387	NM_152756.3	406																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14015942	14015942	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			494	40	248	0	ENST00000311895.7:c.262G>C	p.Val88Leu	p.V88L	ENST00000311895	NM_005236.2	88	Gta/Cta																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627245	86627245	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			286	62	289	0	ENST00000274376.6:c.620G>C	p.Arg207Thr	p.R207T	ENST00000274376	NM_002890.2	207	aGa/aCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	170	458	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	557	976	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045684	26045684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	100	365	0	ENST00000540144.1:c.46G>A	p.Ala16Thr	p.A16T	ENST00000540144	NM_003531.2	16	Gct/Act																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730140	41730140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	238	400	0	ENST00000242208.4:c.389G>A	p.Gly130Glu	p.G130E	ENST00000242208	NM_002192.2	130	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112175429	112175430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	158	342	0	ENST00000257430.4:c.4142dup	p.Leu1382ThrfsTer4	p.L1382Tfs*4	ENST00000257430	NM_000038.5	1380	acc/aCcc																																																																														
APC	324	MSKCC	GRCh37	5	112174424	112174424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	32	180	0	ENST00000257430.4:c.3133C>T	p.Gln1045Ter	p.Q1045*	ENST00000257430	NM_000038.5	1045	Cag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119914	70119915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			672	153	783	0	ENST00000245479.2:c.917dup	p.Pro307AlafsTer271	p.P307Afs*271	ENST00000245479	NM_000346.3	306	gtg/gTtg																																																																														
SYK	6850	MSKCC	GRCh37	9	93606293	93606294	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1436	248	1087	1	ENST00000375746.1:c.113_114inv	p.Leu38Gln	p.L38Q	ENST00000375746	NM_001174167.1	38	cTT/cAA																																																																														
ARAF	369	MSKCC	GRCh37	X	47429353	47429353	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043769-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	180	1095	0	ENST00000377045.4:c.1482del	p.Tyr495ThrfsTer9	p.Y495Tfs*9	ENST00000377045	NM_001654.4	494	gCc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	19	323	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	30	400	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
PARK2	0	MSKCC	GRCh37	6	162683697	162683697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	36	477	1	ENST00000366898.1:c.272C>T	p.Ala91Val	p.A91V	ENST00000366898	NM_004562.2	91	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	45	645	0	ENST00000269305.4:c.658T>A	p.Tyr220Asn	p.Y220N	ENST00000269305	NM_001126112.2	220	Tat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971167	21971167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	31	400	0	ENST00000304494.5:c.191T>C	p.Leu64Pro	p.L64P	ENST00000304494	NM_000077.4	64	cTg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971167	21971167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	31	400	0	ENST00000304494.5:c.191T>C	p.Leu64Pro	p.L64P	ENST00000304494	NM_000077.4	64	cTg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	311	524	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911016	32911016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	30	330	0	ENST00000380152.3:c.2524G>C	p.Val842Leu	p.V842L	ENST00000380152		842	Gta/Cta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			686	363	709	5	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0046931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	57	308	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	180	384	0	ENST00000342988.3:c.1611C>A	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaA																																																																														
MGA	23269	MSKCC	GRCh37	15	42054377	42054377	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	147	296	0	ENST00000219905.7:c.7561C>T	p.Gln2521Ter	p.Q2521*	ENST00000219905	NM_001164273.1	2521	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112170717	112170718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAT			P-0046931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	270	501	1	ENST00000257430.4:c.1816_1819dup	p.Cys607TyrfsTer28	p.C607Yfs*28	ENST00000257430	NM_000038.5	605	gat/gATATat																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	165	466	0	ENST00000347630.2:c.373T>C	p.Phe125Leu	p.F125L	ENST00000347630	NM_001007230.1	125	Ttt/Ctt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246405	46246405	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	104	315	0	ENST00000334344.6:c.4499C>G	p.Ser1500Ter	p.S1500*	ENST00000334344	NM_152641.2	1500	tCa/tGa																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40353791	40353791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	58	768	0	ENST00000293328.3:c.2329A>G	p.Met777Val	p.M777V	ENST00000293328	NM_012448.3	777	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	525	757	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0046952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	41	204	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492861	8492861	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0046952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	113	463	0	ENST00000356435.5:c.2467+1G>T		p.X823_splice	ENST00000356435		823																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	42	373	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	55	683	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151853077	151853077	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	47	388	0	ENST00000262189.6:c.11878C>T	p.Arg3960Ter	p.R3960*	ENST00000262189	NM_170606.2	3960	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593484	48593484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	54	291	0	ENST00000342988.3:c.1235del	p.Tyr412SerfsTer3	p.Y412Sfs*3	ENST00000342988	NM_005359.5	412	tAc/tc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123227915	123227915	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	34	372	0	ENST00000218089.9:c.3626A>T	p.Glu1209Val	p.E1209V	ENST00000218089	NM_001042749.1	1209	gAa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	237	708	1	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913428	32913428	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	60	340	0	ENST00000380152.3:c.4936G>T	p.Glu1646Ter	p.E1646*	ENST00000380152		1646	Gaa/Taa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729975	41729979	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCC	CTGCC	-			P-0046957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	98	803	0	ENST00000242208.4:c.550_554del	p.Gly184LeufsTer18	p.G184Lfs*18	ENST00000242208	NM_002192.2	184	GGCAGc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	43	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	73	682	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0046971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1188	52	759	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	101	539	2	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	101	539	2	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
MITF	4286	MSKCC	GRCh37	3	69928512	69928512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	81	757	0	ENST00000352241.4:c.332A>G	p.Gln111Arg	p.Q111R	ENST00000352241	NM_198159.2	111	cAg/cGg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0046972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	87	259	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405215	139405215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	314	880	0	ENST00000277541.6:c.2630C>T	p.Pro877Leu	p.P877L	ENST00000277541	NM_017617.3	877	cCg/cTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600434	10600434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	279	712	0	ENST00000171111.5:c.1421C>A	p.Ala474Asp	p.A474D	ENST00000171111	NM_203500.1	474	gCc/gAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521744	89521744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	18	328	1	ENST00000336596.2:c.2821G>A	p.Asp941Asn	p.D941N	ENST00000336596	NM_005233.5	941	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014496-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			298	91	396	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610498	10610498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014496-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			422	155	782	0	ENST00000171111.5:c.212G>T	p.Arg71Leu	p.R71L	ENST00000171111	NM_203500.1	71	cGg/cTg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193172940	193172940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014496-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			296	72	311	0	ENST00000367435.3:c.988C>T	p.Arg330Trp	p.R330W	ENST00000367435	NM_024529.4	330	Cgg/Tgg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472548	88472548	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014496-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			477	138	703	0	ENST00000360948.2:c.2007C>G	p.Tyr669Ter	p.Y669*	ENST00000360948	NM_001012338.2	669	taC/taG																																																																														
STK11	6794	MSKCC	GRCh37	19	1221929	1221960	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCGCCGGCTTCTCCTCAGGGATGCTTGAGTA	CTCGCCGGCTTCTCCTCAGGGATGCTTGAGTA	-			P-0014496-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			368	143	737	0	ENST00000326873.7:c.863-18_876del		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149497370	149497370	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014496-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			391	118	584	0	ENST00000261799.4:c.2948C>G	p.Pro983Arg	p.P983R	ENST00000261799	NM_002609.3	983	cCa/cGa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001492	150001493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAG			P-0014496-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			455	40	517	0	ENST00000253339.5:c.2108_2111dup	p.Met704IlefsTer16	p.M704Ifs*16	ENST00000253339		704	atg/atCTATg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015067-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			130	1011	392	0				ENST00000310581	NM_198253.2																																																																																
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015067-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			180	378	429	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
JUN	3725	MSKCC	GRCh37	1	59248409	59248409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015067-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			618	588	630	0	ENST00000371222.2:c.334G>A	p.Glu112Lys	p.E112K	ENST00000371222	NM_002228.3	112	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015067-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			235	400	531	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
CDKN1A	1026	MSKCC	GRCh37	6	36652035	36652035	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015067-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			476	1524	960	0	ENST00000244741.5:c.159del	p.Phe53LeufsTer95	p.F53Lfs*95	ENST00000244741	NM_000389.4	53	Ttt/tt																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983222	149983223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015067-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			188	378	497	0	ENST00000253339.5:c.3035dup	p.Ile1013AsnfsTer2	p.I1013Nfs*2	ENST00000253339		1012	aca/acCa																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983350	149983350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015067-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			157	297	458	0	ENST00000253339.5:c.2908C>A	p.His970Asn	p.H970N	ENST00000253339		970	Cac/Aac																																																																														
ATRX	546	MSKCC	GRCh37	X	76889108	76889108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015067-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			78	223	151	0	ENST00000373344.5:c.4902G>T	p.Trp1634Cys	p.W1634C	ENST00000373344	NM_000489.3	1634	tgG/tgT																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872961	35872961	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015067-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			814	481	517	0	ENST00000216797.5:c.271A>T	p.Met91Leu	p.M91L	ENST00000216797	NM_020529.2	91	Atg/Ttg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438168	56438168	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015067-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			917	594	877	1	ENST00000407977.2:c.825T>A	p.Cys275Ter	p.C275*	ENST00000407977		275	tgT/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	468	858	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161193	56161193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	218	454	0	ENST00000399503.3:c.1062C>G	p.Phe354Leu	p.F354L	ENST00000399503	NM_005921.1	354	ttC/ttG																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195760	102195760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	61	291	0	ENST00000263464.3:c.520C>T	p.Leu174Phe	p.L174F	ENST00000263464	NM_001165.4	174	Ctt/Ttt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0046868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	191	761	0	ENST00000326873.7:c.598-2A>C		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38591588	38591588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	52	389	0	ENST00000299084.4:c.47G>T	p.Arg16Leu	p.R16L	ENST00000299084	NM_152594.2	16	cGa/cTa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610359	10610360	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0046868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	218	819	0	ENST00000171111.5:c.350_351delinsTT	p.Glu117Val	p.E117V	ENST00000171111	NM_203500.1	117	gAG/gTT																																																																														
WHSC1	0	MSKCC	GRCh37	4	1961237	1961237	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	62	413	0	ENST00000382891.5:c.3025G>T	p.Asp1009Tyr	p.D1009Y	ENST00000382891	NM_133335.3	1009	Gat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	372	392	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	518	689	6	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112174379	112174379	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	78	215	0	ENST00000257430.4:c.3088A>T	p.Lys1030Ter	p.K1030*	ENST00000257430	NM_000038.5	1030	Aaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	113	298	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740417	58740417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	159	470	0	ENST00000305921.3:c.1322G>A	p.Arg441His	p.R441H	ENST00000305921	NM_003620.3	441	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653847	89653893	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATATTGATGATGTAGTAAGGTAAGAATGCTTTGATTTTCTATTTCA	AATATTGATGATGTAGTAAGGTAAGAATGCTTTGATTTTCTATTTCA	-			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	56	337	0	ENST00000371953.3:c.155_164+37del		p.X52_splice	ENST00000371953	NM_000314.4	52																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243983	41244069	+	inframe_deletion	In_Frame_Del	DEL	TCCTGCTAAGCTCTCCTTTCTGGACGCTTTTGCTAAAAACAGCAGAACTTTCCTTAATGTCATTTTCAGCAAAACTAGTATCTTCCT	TCCTGCTAAGCTCTCCTTTCTGGACGCTTTTGCTAAAAACAGCAGAACTTTCCTTAATGTCATTTTCAGCAAAACTAGTATCTTCCT	-			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	212	561	0	ENST00000357654.3:c.3479_3565del	p.Lys1160_Arg1188del	p.K1160_R1188del	ENST00000357654	NM_007294.3	1160	aAGGAAGATACTAGTTTTGCTGAAAATGACATTAAGGAAAGTTCTGCTGTTTTTAGCAAAAGCGTCCAGAAAGGAGAGCTTAGCAGGAgt/agt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761461	59761461	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	134	370	0	ENST00000259008.2:c.2946A>T	p.Lys982Asn	p.K982N	ENST00000259008	NM_032043.2	982	aaA/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112174369	112174369	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	79	218	1	ENST00000257430.4:c.3078T>G	p.Asn1026Lys	p.N1026K	ENST00000257430	NM_000038.5	1026	aaT/aaG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0046890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	40	360	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
KDR	3791	MSKCC	GRCh37	4	55980311	55980311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	12	406	0	ENST00000263923.4:c.780G>A	p.Trp260Ter	p.W260*	ENST00000263923	NM_002253.2	260	tgG/tgA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930723	32930724	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0046890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	13	481	0	ENST00000380152.3:c.7595_7596del	p.Pro2532LeufsTer6	p.P2532Lfs*6	ENST00000380152		2532	CCc/c																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593541	48593565	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAAGTGCATATATAAAGGTTAGTTA	CAAGTGCATATATAAAGGTTAGTTA	-			P-0046890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	11	223	0	ENST00000342988.3:c.1295_1308+11del		p.X432_splice	ENST00000342988	NM_005359.5	432																																																																															
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	68	633	0	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																														
TET2	54790	MSKCC	GRCh37	4	106164934	106164934	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0046891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	42	261	0	ENST00000380013.4:c.3802G>C	p.Glu1268Gln	p.E1268Q	ENST00000380013	NM_001127208.2	1268	Gag/Cag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242478	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAG	GAATTAAGAGAAG	AATT			P-0046891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	51	348	2	ENST00000275493.2:c.2236_2248delinsAATT	p.Glu746_Ala750delinsAsnSer	p.E746_A750delinsNS	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGca/AATTca																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	88	586	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589875	212589875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	56	384	2	ENST00000342788.4:c.667G>A	p.Gly223Arg	p.G223R	ENST00000342788	NM_005235.2	223	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112116558	112116558	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	32	250	0	ENST00000257430.4:c.603A>T	p.Glu201Asp	p.E201D	ENST00000257430	NM_000038.5	201	gaA/gaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	78	498	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939417	36939417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	37	820	0	ENST00000361632.4:c.433G>A	p.Glu145Lys	p.E145K	ENST00000361632		145	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480320	56480320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	38	372	0	ENST00000267101.3:c.427C>A	p.Leu143Met	p.L143M	ENST00000267101	NM_001982.3	143	Ctg/Atg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481402	56481402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	54	623	1	ENST00000267101.3:c.589C>T	p.Pro197Ser	p.P197S	ENST00000267101	NM_001982.3	197	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7572986	7572986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	35	465	2	ENST00000269305.4:c.1123C>T	p.Gln375Ter	p.Q375*	ENST00000269305	NM_001126112.2	375	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	43	648	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281157	15281157	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	53	923	0	ENST00000263388.2:c.5099A>G	p.Asp1700Gly	p.D1700G	ENST00000263388	NM_000435.2	1700	gAc/gGc																																																																														
CIC	23152	MSKCC	GRCh37	19	42798842	42798842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	74	777	1	ENST00000575354.2:c.4414G>A	p.Ala1472Thr	p.A1472T	ENST00000575354	NM_015125.3	1472	Gcc/Acc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39240640	39240640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	16	323	0	ENST00000402219.2:c.2128C>T	p.Leu710Phe	p.L710F	ENST00000402219	NM_005633.3	710	Ctt/Ttt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	36	366	0				ENST00000310581	NM_198253.2																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	126	578	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98241328	98241328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	95	590	0	ENST00000331920.6:c.1169A>G	p.Asp390Gly	p.D390G	ENST00000331920	NM_000264.3	390	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	464	762	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212518	36212518	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	616	968	0	ENST00000222270.7:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000222270	NM_014727.1	757	Cag/Tag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279668	123279668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	145	407	0	ENST00000358487.5:c.764G>A	p.Arg255Gln	p.R255Q	ENST00000358487	NM_000141.4	255	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692800	89692800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	131	349	0	ENST00000371953.3:c.284C>A	p.Pro95Gln	p.P95Q	ENST00000371953	NM_000314.4	95	cCa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133241937	133241937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	55	701	0	ENST00000320574.5:c.2419G>T	p.Ala807Ser	p.A807S	ENST00000320574	NM_006231.2	807	Gcc/Tcc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121434592		P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	177	632	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	216	606	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	145	422	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	94	594	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120258	70120259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	228	947	0	ENST00000245479.2:c.1261dupA	p.Ser421LysfsTer157	p.S421Kfs*157	ENST00000245479	NM_000346.3	420	-/A																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	64	363	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174458	11174458	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	112	750	1	ENST00000361445.4:c.7217T>A	p.Val2406Glu	p.V2406E	ENST00000361445	NM_004958.3	2406	gTg/gAg																																																																														
SDHB	6390	MSKCC	GRCh37	1	17349143	17349143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	94	708	0	ENST00000375499.3:c.725G>A	p.Arg242His	p.R242H	ENST00000375499	NM_003000.2	242	cGc/cAc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31511186	31511186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	121	830	0	ENST00000344624.3:c.1388G>A	p.Arg463Gln	p.R463Q	ENST00000344624		463	cGg/cAg																																																																														
SDHC	6391	MSKCC	GRCh37	1	161298256	161298256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	79	481	0	ENST00000367975.2:c.148C>T	p.Arg50Cys	p.R50C	ENST00000367975	NM_003001.3	50	Cgt/Tgt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56857706	56857706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	85	580	0	ENST00000308159.5:c.742G>A	p.Val248Met	p.V248M	ENST00000308159	NM_014669.4	248	Gtg/Atg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120418	70120437	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCCATGTACACCCCCAT	CGCCCCATGTACACCCCCAT	-			P-0046910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	411	1073	0	ENST00000245479.2:c.1424_1443del	p.Pro475ArgfsTer96	p.P475Rfs*96	ENST00000245479	NM_000346.3	474	CGCCCCATGTACACCCCCATc/c																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0046911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	121	504	5	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0046911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	70	357	2	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
CD79A	973	MSKCC	GRCh37	19	42383118	42383118	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	98	672	0	ENST00000221972.3:c.142del	p.Glu48LysfsTer44	p.E48Kfs*44	ENST00000221972	NM_021601.3	46	ctG/ct																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508823	106508823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	99	559	0	ENST00000359195.3:c.817C>T	p.Arg273Cys	p.R273C	ENST00000359195	NM_002649.2	273	Cgc/Tgc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0046911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	234	580	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953040	2953040	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141751925		P-0046911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	491	977	1	ENST00000396946.4:c.2900G>A	p.Arg967His	p.R967H	ENST00000396946	NM_032415.4	967	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420108	49420108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	240	648	0	ENST00000301067.7:c.15641G>A	p.Arg5214His	p.R5214H	ENST00000301067	NM_003482.3	5214	cGc/cAc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987289	2987289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	124	654	1	ENST00000396946.4:c.140G>A	p.Arg47His	p.R47H	ENST00000396946	NM_032415.4	47	cGt/cAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868196	37868196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	146	765	1	ENST00000269571.5:c.917C>T	p.Thr306Met	p.T306M	ENST00000269571		306	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087904	27087904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	128	662	2	ENST00000324856.7:c.2191G>T	p.Gly731Cys	p.G731C	ENST00000324856	NM_006015.4	731	Ggc/Tgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71949149	71949149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	186	960	0	ENST00000298229.2:c.3616C>T	p.Arg1206Trp	p.R1206W	ENST00000298229	NM_001567.3	1206	Cgg/Tgg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067437	37067441	+	frameshift_variant	Frame_Shift_Del	DEL	GATAC	GATAC	-			P-0046911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	214	564	0	ENST00000231790.2:c.1348_1352del	p.Asp450AsnfsTer27	p.D450Nfs*27	ENST00000231790	NM_000249.3	450	GATACa/a																																																																														
ATRX	546	MSKCC	GRCh37	X	76937788	76937788	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	204	552	0	ENST00000373344.5:c.2960del	p.Lys987ArgfsTer16	p.K987Rfs*16	ENST00000373344	NM_000489.3	987	aAg/ag																																																																														
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	14	197	0	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275239	41275239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	125	371	1	ENST00000349496.5:c.1405C>T	p.Arg469Cys	p.R469C	ENST00000349496	NM_001904.3	469	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	40	442	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	133	754	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0046919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	142	760	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519865	66519865	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0046919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	42	291	0	ENST00000358598.2:c.349-1G>T		p.X117_splice	ENST00000358598	NM_212471.2	117																																																																															
RB1	5925	MSKCC	GRCh37	13	48955580	48955580	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	25	228	0	ENST00000267163.4:c.1695+1G>A		p.X565_splice	ENST00000267163	NM_000321.2	565																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056356	27056356	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0046919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	68	293	0	ENST00000324856.7:c.1350+2T>C		p.X450_splice	ENST00000324856	NM_006015.4	450																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40727168	40727168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	113	563	1	ENST00000373198.4:c.3796G>T	p.Val1266Leu	p.V1266L	ENST00000373198	NM_133170.3	1266	Gtg/Ttg																																																																														
ATRX	546	MSKCC	GRCh37	X	76829779	76829779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	115	270	0	ENST00000373344.5:c.6262G>A	p.Gly2088Ser	p.G2088S	ENST00000373344	NM_000489.3	2088	Ggt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	34	358	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588190	67588190	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	33	205	0	ENST00000274335.5:c.1019+1G>T		p.X340_splice	ENST00000274335		340																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914383	32914383	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	42	471	0	ENST00000380152.3:c.5891A>T	p.Lys1964Met	p.K1964M	ENST00000380152		1964	aAg/aTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29559891	29559898	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ACTCCATA	ACTCCATA	-			P-0046920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	33	233	0	ENST00000358273.4:c.3488_3495del	p.His1163ArgfsTer29	p.H1163Rfs*29	ENST00000358273	NM_001042492.2	1163	cACTCCATA/c																																																																														
ATRX	546	MSKCC	GRCh37	X	76937648	76937648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	50	359	0	ENST00000373344.5:c.3100C>A	p.Gln1034Lys	p.Q1034K	ENST00000373344	NM_000489.3	1034	Caa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	22	364	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101054	27101054	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	47	790	3	ENST00000324856.7:c.4336C>T	p.Arg1446Ter	p.R1446*	ENST00000324856	NM_006015.4	1446	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0046921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	24	387	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	17	380	0	ENST00000371953.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000371953	NM_000314.4	130	cGa/cTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692946	89692946	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	23	378	0	ENST00000371953.3:c.432del	p.Lys144AsnfsTer3	p.K144Nfs*3	ENST00000371953	NM_000314.4	144	Aaa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952075	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0046921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	14	277	0	ENST00000263967.3:c.3129_3130delinsTT	p.Met1043_Asn1044delinsIleTyr	p.M1043_N1044delinsIY	ENST00000263967	NM_006218.2	1043	atGAat/atTTat																																																																														
FLT3	2322	MSKCC	GRCh37	13	28644675	28644675	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	90	319	0	ENST00000241453.7:c.118C>A	p.His40Asn	p.H40N	ENST00000241453	NM_004119.2	40	Cat/Aat																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023072	33023072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	114	508	0	ENST00000300177.4:c.181G>A	p.Gly61Ser	p.G61S	ENST00000300177	NM_001191322.1	61	Ggc/Agc																																																																														
NF1	4763	MSKCC	GRCh37	17	29483068	29483068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	64	276	0	ENST00000358273.4:c.128T>C	p.Leu43Pro	p.L43P	ENST00000358273	NM_001042492.2	43	cTa/cCa																																																																														
NF1	4763	MSKCC	GRCh37	17	29654571	29654571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	68	238	0	ENST00000358273.4:c.5323C>T	p.Gln1775Ter	p.Q1775*	ENST00000358273	NM_001042492.2	1775	Caa/Taa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	69	325	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12447464	12447464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	182	588	0	ENST00000287820.6:c.703G>A	p.Glu235Lys	p.E235K	ENST00000287820	NM_015869.4	235	Gag/Aag																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515188	149515188	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	209	696	0	ENST00000261799.4:c.294C>G	p.Tyr98Ter	p.Y98*	ENST00000261799	NM_002609.3	98	taC/taG																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	85	334	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
STK11	6794	MSKCC	GRCh37	19	1219341	1219341	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	121	835	0	ENST00000326873.7:c.393C>G	p.Tyr131Ter	p.Y131*	ENST00000326873	NM_000455.4	131	taC/taG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0046926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	214	577	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0046926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	216	453	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0046926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	126	226	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245357	53245357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	191	535	0	ENST00000375401.3:c.680T>C	p.Ile227Thr	p.I227T	ENST00000375401	NM_004187.3	227	aTt/aCt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444663	78444663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	148	401	0	ENST00000370768.2:c.26C>G	p.Pro9Arg	p.P9R	ENST00000370768	NM_003902.3	9	cCc/cGc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	33	306	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	56	705	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																														
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	75	592	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341269	8341269	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	19	209	0	ENST00000356435.5:c.4948-1G>A		p.X1650_splice	ENST00000356435		1650																																																																															
MSI1	4440	MSKCC	GRCh37	12	120794763	120794763	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	76	758	1	ENST00000257552.2:c.594del	p.Arg199GlyfsTer50	p.R199Gfs*50	ENST00000257552	NM_002442.3	198	ggG/gg																																																																														
RECQL	5965	MSKCC	GRCh37	12	21643285	21643285	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	51	402	0	ENST00000421138.2:c.242A>G	p.Asp81Gly	p.D81G	ENST00000421138		81	gAt/gGt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162748405	162748406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	33	330	0	ENST00000367921.3:c.2323dup	p.Val775GlyfsTer21	p.V775Gfs*21	ENST00000367921	NM_006182.2	773	-/G																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591957	48591957	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	29	286	0	ENST00000342988.3:c.1120G>T	p.Glu374Ter	p.E374*	ENST00000342988	NM_005359.5	374	Gaa/Taa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276675	15276675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	82	635	1	ENST00000263388.2:c.5590G>T	p.Asp1864Tyr	p.D1864Y	ENST00000263388	NM_000435.2	1864	Gac/Tac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549352	187549352	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	64	567	0	ENST00000441802.2:c.4766A>G	p.Lys1589Arg	p.K1589R	ENST00000441802	NM_005245.3	1589	aAg/aGg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151853080	151853080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	31	343	0	ENST00000262189.6:c.11875G>C	p.Ala3959Pro	p.A3959P	ENST00000262189	NM_170606.2	3959	Gcc/Ccc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971157	21971157	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	30	418	0	ENST00000304494.5:c.201del	p.Ala68ArgfsTer78	p.A68Rfs*78	ENST00000304494	NM_000077.4	67	ggC/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971157	21971157	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	30	418	0	ENST00000304494.5:c.201del	p.Ala68ArgfsTer78	p.A68Rfs*78	ENST00000304494	NM_000077.4	67	ggC/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971157	21971157	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	30	418	0	ENST00000304494.5:c.201del	p.Ala68ArgfsTer78	p.A68Rfs*78	ENST00000304494	NM_000077.4	67	ggC/gg																																																																														
SYK	6850	MSKCC	GRCh37	9	93606582	93606582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	52	451	0	ENST00000375746.1:c.402G>T	p.Gln134His	p.Q134H	ENST00000375746	NM_001174167.1	134	caG/caT																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209393	98209393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	65	561	0	ENST00000331920.6:c.4145A>G	p.His1382Arg	p.H1382R	ENST00000331920	NM_000264.3	1382	cAc/cGc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20152095	20152095	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	40	267	0	ENST00000379607.5:c.235del	p.Val79LeufsTer13	p.V79Lfs*13	ENST00000379607	NM_001412.3	79	Gtt/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			299	122	367	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578232	7578232	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			415	246	585	3	ENST00000269305.4:c.617T>A	p.Leu206Ter	p.L206*	ENST00000269305	NM_001126112.2	206	tTg/tAg																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271393	26271393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			425	283	594	1	ENST00000305910.3:c.220G>T	p.Glu74Ter	p.E74*	ENST00000305910	NM_003534.2	74	Gaa/Taa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986989	36986990	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AA			P-0044707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			323	678	484	1	ENST00000354822.5:c.699_700delinsTT	p.Gln234Ter	p.Q234*	ENST00000354822	NM_001079668.2	233	acGCag/acTTag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	344	293	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	139	265	0	ENST00000278616.4:c.6908dupA	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																														
ETV6	2120	MSKCC	GRCh37	12	12038858	12038858	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	214	200	0	ENST00000396373.4:c.1153-2A>G		p.X385_splice	ENST00000396373	NM_001987.4	385																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15291016	15291016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	195	671	0	ENST00000263388.2:c.3194A>G	p.Asp1065Gly	p.D1065G	ENST00000263388	NM_000435.2	1065	gAc/gGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218660	36218660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	199	623	0	ENST00000222270.7:c.4364G>A	p.Arg1455His	p.R1455H	ENST00000222270	NM_014727.1	1455	cGc/cAc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167792	185167792	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	136	347	0	ENST00000265026.3:c.1115T>A	p.Leu372His	p.L372H	ENST00000265026	NM_004721.4	372	cTt/cAt																																																																														
IRF4	3662	MSKCC	GRCh37	6	401585	401585	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	119	392	0	ENST00000380956.4:c.907A>C	p.Asn303His	p.N303H	ENST00000380956	NM_001195286.1	303	Aac/Cac																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798478	32798478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	154	538	0	ENST00000374899.4:c.1378G>C	p.Ala460Pro	p.A460P	ENST00000374899	NM_018833.2	460	Gcc/Ccc																																																																														
ATM	472	MSKCC	GRCh37	11	108128263	108128264	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	C			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	111	259	0	ENST00000278616.4:c.2306_2307delinsC	p.Glu769AlafsTer8	p.E769Afs*8	ENST00000278616	NM_000051.3	769	gAG/gC																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933052	39933057	+	frameshift_variant	Frame_Shift_Del	DEL	GGACTT	GGACTT	A			P-0046861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	182	585	0	ENST00000378444.4:c.1542_1547delinsT	p.Ser515Ter	p.S515*	ENST00000378444	NM_001123385.1	514	ccAAGTCCt/ccTt																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	125	593	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041596	47041596	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	165	340	0	ENST00000329236.7:c.1587C>A	p.Tyr529Ter	p.Y529*	ENST00000329236	NM_001204466.1	529	taC/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	48	524	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377229	118377229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	44	438	0	ENST00000534358.1:c.10622C>G	p.Pro3541Arg	p.P3541R	ENST00000534358	NM_005933.3	3541	cCa/cGa																																																																														
NF1	4763	MSKCC	GRCh37	17	29533261	29533261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	27	285	0	ENST00000358273.4:c.1264G>A	p.Ala422Thr	p.A422T	ENST00000358273	NM_001042492.2	422	Gca/Aca																																																																														
ATR	545	MSKCC	GRCh37	3	142186805	142186805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	14	316	0	ENST00000350721.4:c.6658G>A	p.Asp2220Asn	p.D2220N	ENST00000350721	NM_001184.3	2220	Gat/Aat																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240755	53240755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	176	298	1	ENST00000375401.3:c.1325C>T	p.Ala442Val	p.A442V	ENST00000375401	NM_004187.3	442	gCt/gTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120471665	120471665	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs141385984		P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	142	378	0	ENST00000256646.2:c.3826G>C	p.Glu1276Gln	p.E1276Q	ENST00000256646	NM_024408.3	1276	Gag/Cag																																																																														
TET1	80312	MSKCC	GRCh37	10	70333593	70333593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	68	347	0	ENST00000373644.4:c.1498G>A	p.Glu500Lys	p.E500K	ENST00000373644	NM_030625.2	500	Gag/Aag																																																																														
TET1	80312	MSKCC	GRCh37	10	70405991	70405991	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	24	418	0	ENST00000373644.4:c.3505C>T	p.Gln1169Ter	p.Q1169*	ENST00000373644	NM_030625.2	1169	Caa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108165711	108165711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	14	273	0	ENST00000278616.4:c.4834G>C	p.Glu1612Gln	p.E1612Q	ENST00000278616	NM_000051.3	1612	Gaa/Caa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	495101	495101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	22	359	0	ENST00000399788.2:c.205C>A	p.Arg69Ser	p.R69S	ENST00000399788	NM_001042603.1	69	Cgt/Agt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426751	49426751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	74	264	0	ENST00000301067.7:c.11737C>T	p.Gln3913Ter	p.Q3913*	ENST00000301067	NM_003482.3	3913	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	49039501	49039501	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	29	311	0	ENST00000267163.4:c.2486C>G	p.Ser829Ter	p.S829*	ENST00000267163	NM_000321.2	829	tCa/tGa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988454	36988454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	86	458	0	ENST00000354822.5:c.199C>G	p.Pro67Ala	p.P67A	ENST00000354822	NM_001079668.2	67	Ccg/Gcg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991473	72991473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	290	511	0	ENST00000268489.5:c.2572G>A	p.Glu858Lys	p.E858K	ENST00000268489	NM_006885.3	858	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872559	37872559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	56	435	0	ENST00000269571.5:c.1519G>A	p.Glu507Lys	p.E507K	ENST00000269571		507	Gag/Aag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591975	48591975	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	52	254	0	ENST00000342988.3:c.1138A>T	p.Arg380Trp	p.R380W	ENST00000342988	NM_005359.5	380	Agg/Tgg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265697	10265697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	129	426	1	ENST00000340748.4:c.1480G>A	p.Glu494Lys	p.E494K	ENST00000340748		494	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11130268	11130268	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	108	470	0	ENST00000344626.4:c.2507G>T	p.Gly836Val	p.G836V	ENST00000344626	NM_003072.3	836	gGa/gTa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132409	11132409	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	140	621	1	ENST00000344626.4:c.2625G>A	p.Trp875Ter	p.W875*	ENST00000344626	NM_003072.3	875	tgG/tgA																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264758	46264758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	56	355	0	ENST00000371998.3:c.1628C>T	p.Ser543Leu	p.S543L	ENST00000371998		543	tCa/tTa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264841	46264841	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	38	296	0	ENST00000371998.3:c.1711C>G	p.Leu571Val	p.L571V	ENST00000371998		571	Ctg/Gtg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252906	36252909	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	TTA			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	80	365	1	ENST00000300305.3:c.453_456delinsTAA	p.Met151IlefsTer25	p.M151Ifs*25	ENST00000300305		151	atGAAG/atTAA																																																																														
CRKL	1399	MSKCC	GRCh37	22	21272374	21272374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	146	723	0	ENST00000354336.3:c.152C>T	p.Ser51Leu	p.S51L	ENST00000354336	NM_005207.3	51	tCg/tTg																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181964	38181967	+	frameshift_variant	Frame_Shift_Del	DEL	ACAG	ACAG	-			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	337	468	0	ENST00000396334.3:c.591_594del	p.Asn199IlefsTer3	p.N199Ifs*3	ENST00000396334	NM_002468.4	196	gaACAG/ga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	81	412	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	206	535	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554840	187554840	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	78	275	0	ENST00000441802.2:c.4321C>T	p.Gln1441Ter	p.Q1441*	ENST00000441802	NM_005245.3	1441	Cag/Tag																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449523	149449523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	135	561	1	ENST00000286301.3:c.1423G>A	p.Glu475Lys	p.E475K	ENST00000286301	NM_005211.3	475	Gag/Aag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518104	176518104	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs147846257		P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	151	467	0	ENST00000292408.4:c.602G>A	p.Arg201Gln	p.R201Q	ENST00000292408	NM_213647.1	201	cGg/cAg																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271384	26271384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	171	480	0	ENST00000305910.3:c.229C>G	p.Gln77Glu	p.Q77E	ENST00000305910	NM_003534.2	77	Cag/Gag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004769	150004769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	33	344	0	ENST00000253339.5:c.1456G>A	p.Val486Ile	p.V486I	ENST00000253339		486	Gtc/Atc																																																																														
FANCC	2176	MSKCC	GRCh37	9	98003019	98003019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	15	235	0	ENST00000289081.3:c.257G>A	p.Ser86Asn	p.S86N	ENST00000289081	NM_000136.2	86	aGc/aAc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248044	110248044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	58	358	0	ENST00000374672.4:c.1428G>C	p.Lys476Asn	p.K476N	ENST00000374672	NM_004235.4	476	aaG/aaC																																																																														
AR	367	MSKCC	GRCh37	X	66766450	66766450	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	54	301	1	ENST00000374690.3:c.1462C>T	p.Gln488Ter	p.Q488*	ENST00000374690	NM_000044.3	488	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	84	317	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	72	519	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	21	608	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864117	57864117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	139	521	0	ENST00000228682.2:c.1594C>T	p.Arg532Cys	p.R532C	ENST00000228682	NM_005269.2	532	Cgc/Tgc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243668602	243668602	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	66	301	0	ENST00000263826.5:c.1389G>C	p.Glu463Asp	p.E463D	ENST00000263826	NM_005465.4	463	gaG/gaC																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434839	110434839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	78	595	0	ENST00000375856.3:c.3562G>T	p.Gly1188Cys	p.G1188C	ENST00000375856	NM_003749.2	1188	Ggc/Tgc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14042054	14042054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	41	297	0	ENST00000311895.7:c.2601G>A	p.Met867Ile	p.M867I	ENST00000311895	NM_005236.2	867	atG/atA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224160	36224160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	52	583	0	ENST00000222270.7:c.6710G>T	p.Gly2237Val	p.G2237V	ENST00000222270	NM_014727.1	2237	gGc/gTc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715679	30715679	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	27	254	0	ENST00000359013.4:c.1412A>C	p.Asp471Ala	p.D471A	ENST00000359013	NM_001024847.2	471	gAt/gCt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467942	66467942	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	23	239	0	ENST00000273854.3:c.327G>C	p.Gln109His	p.Q109H	ENST00000273854	NM_004439.5	109	caG/caC																																																																														
MED12	9968	MSKCC	GRCh37	X	70344962	70344962	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	74	235	0	ENST00000374080.3:c.2192A>C	p.His731Pro	p.H731P	ENST00000374080		731	cAc/cCc																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504042	123504042	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	17	114	0	ENST00000371139.4:c.218A>C	p.His73Pro	p.H73P	ENST00000371139	NM_001114937.2	73	cAt/cCt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0046875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	886	614	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	369	807	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514650	103514650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	75	386	0	ENST00000355739.4:c.1151C>T	p.Ser384Leu	p.S384L	ENST00000355739	NM_000123.3	384	tCa/tTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445005	89445005	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112239794		P-0046878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	56	352	2	ENST00000336596.2:c.1325C>T	p.Thr442Met	p.T442M	ENST00000336596	NM_005233.5	442	aCg/aTg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716327	52716327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	200	587	0	ENST00000322088.6:c.771G>T	p.Trp257Cys	p.W257C	ENST00000322088	NM_014225.5	257	tgG/tgT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465600	8465600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	20	411	0	ENST00000356435.5:c.3580G>A	p.Ala1194Thr	p.A1194T	ENST00000356435		1194	Gct/Act																																																																														
RET	5979	MSKCC	GRCh37	10	43620336	43620336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	70	422	1	ENST00000355710.3:c.2945G>A	p.Arg982His	p.R982H	ENST00000355710	NM_020975.4	982	cGc/cAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162771	47162771	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	19	384	0	ENST00000409792.3:c.3355A>C	p.Ser1119Arg	p.S1119R	ENST00000409792	NM_014159.6	1119	Agt/Cgt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591190	67591246	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCA	GGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCA	-			P-0046878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	15	313	0	ENST00000274335.5:c.1745+42_1748del		p.X582_splice	ENST00000274335		582																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	116	298	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0046879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	73	341	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0046879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	125	386	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47088069	47088069	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	103	403	0	ENST00000409792.3:c.7006A>G	p.Ile2336Val	p.I2336V	ENST00000409792	NM_014159.6	2336	Att/Gtt																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647685	2647685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	40	581	1	ENST00000342085.4:c.1588G>A	p.Gly530Arg	p.G530R	ENST00000342085	NM_002613.4	530	Ggg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	261	516	1	ENST00000269305.4:c.548C>A	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tAa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563168	21563168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	137	792	0	ENST00000382592.4:c.751G>A	p.Ala251Thr	p.A251T	ENST00000382592	NM_014572.2	251	Gcg/Acg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350627	89350627	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	71	578	0	ENST00000301030.4:c.2323A>G	p.Lys775Glu	p.K775E	ENST00000301030	NM_001256183.1	775	Aaa/Gaa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49924983	49924983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	54	521	0	ENST00000296474.3:c.3960G>A	p.Met1320Ile	p.M1320I	ENST00000296474	NM_002447.2	1320	atG/atA																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149510154	149510154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	75	586	1	ENST00000261799.4:c.1315C>T	p.Arg439Trp	p.R439W	ENST00000261799	NM_002609.3	439	Cgg/Tgg																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	533	743	1	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	506	725	2	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243897	41243901	+	frameshift_variant	Frame_Shift_Del	DEL	AGATA	AGATA	-			P-0046881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	345	487	0	ENST00000357654.3:c.3647_3651del	p.Leu1216Ter	p.L1216*	ENST00000357654	NM_007294.3	1216	tTATCT/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	56	330	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	59	392	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	198	751	2	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028657	12028657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	87	351	0	ENST00000353533.5:c.860G>A	p.Arg287His	p.R287H	ENST00000353533	NM_003010.3	287	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0046883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	55	288	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	63	286	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524567	103524568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	68	179	0	ENST00000355739.4:c.2705dup	p.Asn902LysfsTer7	p.N902Kfs*7	ENST00000355739	NM_000123.3	900	caa/cAaa																																																																														
WT1	7490	MSKCC	GRCh37	11	32456461	32456461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	87	413	0	ENST00000332351.3:c.431C>T	p.Pro144Leu	p.P144L	ENST00000332351	NM_024426.4	144	cCg/cTg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376332	15376332	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200899247		P-0046883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	138	682	0	ENST00000263377.2:c.682G>A	p.Val228Ile	p.V228I	ENST00000263377	NM_058243.2	228	Gtc/Atc																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346337	152346337	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	92	431	0	ENST00000359321.1:c.233T>A	p.Val78Asp	p.V78D	ENST00000359321	NM_005431.1	78	gTc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790038	40790038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	111	637	0	ENST00000373198.4:c.2693C>T	p.Thr898Met	p.T898M	ENST00000373198	NM_133170.3	898	aCg/aTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678548	88678548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	171	531	0	ENST00000360948.2:c.988C>A	p.Pro330Thr	p.P330T	ENST00000360948	NM_001012338.2	330	Cca/Aca																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851316	156851316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	138	878	0	ENST00000524377.1:c.2273C>A	p.Ala758Asp	p.A758D	ENST00000524377	NM_002529.3	758	gCc/gAc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88651934	88651934	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	100	359	0	ENST00000372037.3:c.281C>G	p.Thr94Ser	p.T94S	ENST00000372037	NM_004329.2	94	aCc/aGc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708614	43708614	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0046884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	70	418	0	ENST00000382044.4:c.4682G>C	p.Gly1561Ala	p.G1561A	ENST00000382044	NM_001141980.1	1561	gGa/gCa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647161	23647161	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	121	621	1	ENST00000261584.4:c.706T>G	p.Phe236Val	p.F236V	ENST00000261584	NM_024675.3	236	Ttc/Gtc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41219633	41219633	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs55719788		P-0046884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	293	358	0	ENST00000357654.3:c.5066T>G	p.Met1689Arg	p.M1689R	ENST00000357654	NM_007294.3	1689	aTg/aGg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11022948	11022948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	492	618	0	ENST00000327064.4:c.647G>T	p.Ser216Ile	p.S216I	ENST00000327064	NM_199141.1	216	aGc/aTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224503	36224503	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	167	814	0	ENST00000222270.7:c.6965G>C	p.Ser2322Thr	p.S2322T	ENST00000222270	NM_014727.1	2322	aGc/aCc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164099	47164099	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	49	243	0	ENST00000409792.3:c.2027C>G	p.Ser676Cys	p.S676C	ENST00000409792	NM_014159.6	676	tCt/tGt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201680	66201680	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	147	414	0	ENST00000273854.3:c.2822G>C	p.Ser941Thr	p.S941T	ENST00000273854	NM_004439.5	941	aGt/aCt																																																																														
BTK	695	MSKCC	GRCh37	X	100630184	100630198	+	inframe_deletion	In_Frame_Del	DEL	AACAGGCGCTTCTTG	AACAGGCGCTTCTTG	-			P-0046884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	72	463	0	ENST00000308731.7:c.75_89del	p.Lys26_Phe30del	p.K26_F30del	ENST00000308731	NM_000061.2	25	ttCAAGAAGCGCCTGTTt/ttt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288774	33288774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	65	591	0	ENST00000374542.5:c.778C>T	p.Arg260Cys	p.R260C	ENST00000374542	NM_001141970.1	260	Cgt/Tgt																																																																														
VHL	7428	MSKCC	GRCh37	3	10183788	10183788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	141	929	0	ENST00000256474.2:c.257C>T	p.Pro86Leu	p.P86L	ENST00000256474	NM_000551.3	86	cCc/cTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820786	3820786	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	83	997	0	ENST00000262367.5:c.2665T>G	p.Ser889Ala	p.S889A	ENST00000262367	NM_004380.2	889	Tca/Gca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16089875	16089875	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	35	339	0	ENST00000268712.3:c.235T>A	p.Ser79Thr	p.S79T	ENST00000268712	NM_006311.3	79	Tct/Act																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433482	138433482	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	39	483	0	ENST00000289153.2:c.1130A>G	p.Asn377Ser	p.N377S	ENST00000289153	NM_006219.2	377	aAt/aGt																																																																														
ATR	545	MSKCC	GRCh37	3	142185368	142185368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	65	308	0	ENST00000350721.4:c.6695G>A	p.Gly2232Glu	p.G2232E	ENST00000350721	NM_001184.3	2232	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	1168	722	1	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969405	44969405	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	250	503	1	ENST00000377967.4:c.4087C>T	p.Arg1363Ter	p.R1363*	ENST00000377967	NM_021140.2	1363	Cga/Tga																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957528	175957528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	139	421	0	ENST00000367669.3:c.1868A>C	p.Lys623Thr	p.K623T	ENST00000367669	NM_022457.5	623	aAa/aCa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562847	21562847	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	110	749	0	ENST00000382592.4:c.1072G>C	p.Asp358His	p.D358H	ENST00000382592	NM_014572.2	358	Gac/Cac																																																																														
TP63	8626	MSKCC	GRCh37	3	189456493	189456493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	552	491	0	ENST00000264731.3:c.254C>T	p.Ala85Val	p.A85V	ENST00000264731	NM_003722.4	85	gCg/gTg																																																																														
TEK	7010	MSKCC	GRCh37	9	27202880	27202880	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	302	484	0	ENST00000380036.4:c.1972T>G	p.Ser658Ala	p.S658A	ENST00000380036	NM_000459.3	658	Tct/Gct																																																																														
ATRX	546	MSKCC	GRCh37	X	76888693	76888694	+	splice_donor_variant	Splice_Site	INS	-	-	CCTGGATCAACCAAAGCTTTGTTAAATATTT			P-0046887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	104	391	0	ENST00000373344.5:c.5105_5134+1dup		p.X1702_splice	ENST00000373344	NM_000489.3	1702																																																																															
MET	4233	MSKCC	GRCh37	7	116411884	116411893	+	intron_variant	Intron	DEL	TCTTTCTCTC	TCTTTCTCTC	-			P-0046949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	349	787	0	ENST00000397752.3:c.2888-18_2888-9delCTTTCTCTCT		p.*963*	ENST00000397752	NM_000245.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0046796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	138	611	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176700745	176700745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	81	269	0	ENST00000439151.2:c.5582G>A	p.Arg1861Gln	p.R1861Q	ENST00000439151	NM_022455.4	1861	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29556985	29556985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	29	125	0	ENST00000358273.4:c.2983C>G	p.Leu995Val	p.L995V	ENST00000358273	NM_001042492.2	995	Ctg/Gtg																																																																														
TET2	54790	MSKCC	GRCh37	4	106158433	106158606	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTAGATACTCCTATAAAAAATTTATTGGATACACCTGTCAAGACTCAATATGATTTCCCATCTTGCAGATGTGTAGGTAAGTGCCAGAAATGTACTGAGACACATGGCGTTTATCCAGAATTAGCAAATTTATCTTCAGATATGGGATTTTCCTTCTTTTTTTAAATCTTGAGT	CTAGATACTCCTATAAAAAATTTATTGGATACACCTGTCAAGACTCAATATGATTTCCCATCTTGCAGATGTGTAGGTAAGTGCCAGAAATGTACTGAGACACATGGCGTTTATCCAGAATTAGCAAATTTATCTTCAGATATGGGATTTTCCTTCTTTTTTTAAATCTTGAGT	-			P-0046810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	19	156	0	ENST00000380013.4:c.3336_3409+100del		p.X1112_splice	ENST00000380013	NM_001127208.2	1112																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123279560	123279587	+	protein_altering_variant	In_Frame_Del	DEL	ATCCACTGGATGTGGGGCTGGGCATCAC	ATCCACTGGATGTGGGGCTGGGCATCAC	T			P-0046810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	293	560	0	ENST00000358487.5:c.845_872delinsA	p.Ser282_Ile291delinsAsn	p.S282_I291delinsN	ENST00000358487	NM_000141.4	282	aGTGATGCCCAGCCCCACATCCAGTGGATc/aAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105744	27105760	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGGAGATAGCCTTTT	TGAGGAGATAGCCTTTT	CAA			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	155	363	1	ENST00000324856.7:c.5355_5371delinsCAA	p.Glu1786AsnfsTer11	p.E1786Nfs*11	ENST00000324856	NM_006015.4	1785	gaTGAGGAGATAGCCTTTTca/gaCAAca																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220123	5220123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	162	644	0	ENST00000357368.4:c.3592C>T	p.His1198Tyr	p.H1198Y	ENST00000357368	NM_002850.3	1198	Cac/Tac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15297916	15297916	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	177	702	0	ENST00000263388.2:c.1840G>A	p.Gly614Ser	p.G614S	ENST00000263388	NM_000435.2	614	Ggt/Agt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138376614	138376614	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	77	401	0	ENST00000289153.2:c.2860G>T	p.Glu954Ter	p.E954*	ENST00000289153	NM_006219.2	954	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	109	207	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450321	50450321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	126	601	0	ENST00000331340.3:c.505G>A	p.Gly169Arg	p.G169R	ENST00000331340	NM_006060.4	169	Ggg/Agg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945117	151945117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	16	286	0	ENST00000262189.6:c.2402C>G	p.Pro801Arg	p.P801R	ENST00000262189	NM_170606.2	801	cCt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0046850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	22	333	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	15	330	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	14	309	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0046851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	19	413	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	35	396	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	35	396	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	17	510	0	ENST00000269305.4:c.800G>A	p.Arg267Gln	p.R267Q	ENST00000269305	NM_001126112.2	267	cGg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	35	396	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0046855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	28	326	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	39	364	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374943	45374943	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	33	335	0	ENST00000262160.6:c.900T>A	p.Asp300Glu	p.D300E	ENST00000262160	NM_005901.5	300	gaT/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	112	370	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0046856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	59	196	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
ARAF	369	MSKCC	GRCh37	X	47428239	47428239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	30	467	0	ENST00000377045.4:c.1199G>A	p.Arg400His	p.R400H	ENST00000377045	NM_001654.4	400	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	146	705	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43771655	43771655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	92	507	0	ENST00000382044.4:c.728del	p.Val243GlyfsTer12	p.V243Gfs*12	ENST00000382044	NM_001141980.1	243	gTg/gg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120501	70120502	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0046856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	53	740	0	ENST00000245479.2:c.1504_1505dup	p.Tyr503SerfsTer21	p.Y503Sfs*21	ENST00000245479	NM_000346.3	501	-/GT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	272	386	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	301	477	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975399	13975399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186330943		P-0046857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	107	329	1	ENST00000405192.2:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000405192	NM_001163147.1	163	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912786	50912786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61751955		P-0046857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	360	757	0	ENST00000440232.2:c.2017G>A	p.Glu673Lys	p.E673K	ENST00000440232	NM_002691.3	673	Gag/Aag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943466	17943466	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	244	577	0	ENST00000458235.1:c.2542A>G	p.Thr848Ala	p.T848A	ENST00000458235	NM_000215.3	848	Aca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	99	365	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	104	337	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	119	615	0	ENST00000269305.4:c.281C>A	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106598	27106599	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0046859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	138	593	0	ENST00000324856.7:c.6209_6210del	p.Gln2070LeufsTer28	p.Q2070Lfs*28	ENST00000324856	NM_006015.4	2070	cAG/c																																																																														
POLE	5426	MSKCC	GRCh37	12	133215861	133215861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	27	350	1	ENST00000320574.5:c.5402G>A	p.Gly1801Asp	p.G1801D	ENST00000320574	NM_006231.2	1801	gGc/gAc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458407	12458407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	136	481	0	ENST00000287820.6:c.1024C>A	p.Gln342Lys	p.Q342K	ENST00000287820	NM_015869.4	342	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	293	515	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138642	55138642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143344944		P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	96	350	0	ENST00000257290.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000257290	NM_006206.4	440	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	109	189	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32189003	32189003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	229	561	1	ENST00000375023.3:c.551C>T	p.Pro184Leu	p.P184L	ENST00000375023	NM_004557.3	184	cCg/cTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42042300	42042301	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	159	320	0	ENST00000219905.7:c.6499_6500del	p.Leu2167GlyfsTer27	p.L2167Gfs*27	ENST00000219905	NM_001164273.1	2165	gaCTct/gact																																																																														
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	334	517	0	ENST00000269305.4:c.406del	p.Gln136AsnfsTer34	p.Q136Nfs*34	ENST00000269305	NM_001126112.2	136	Caa/aa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271192	153271192	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	35	153	0	ENST00000281708.4:c.584+2T>C		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9780039	9780039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	279	495	1	ENST00000377346.4:c.1303G>A	p.Gly435Arg	p.G435R	ENST00000377346	NM_005026.3	435	Ggg/Agg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805360	89805361	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	155	394	0	ENST00000389301.3:c.4188_4189dup	p.Thr1397LysfsTer11	p.T1397Kfs*11	ENST00000389301	NM_000135.2	1397	aca/aAAca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589858	212589858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	196	384	0	ENST00000342788.4:c.684C>A	p.Asp228Glu	p.D228E	ENST00000342788	NM_005235.2	228	gaC/gaA																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314905	1314905	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0046860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	83	267	0				ENST00000381566																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	316	585	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	189	416	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0046663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	230	623	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949124	44949124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	289	509	0	ENST00000377967.4:c.3685C>T	p.Gln1229Ter	p.Q1229*	ENST00000377967	NM_021140.2	1229	Cag/Tag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969382	44969383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	240	449	0	ENST00000377967.4:c.4065dup	p.Val1356SerfsTer33	p.V1356Sfs*33	ENST00000377967	NM_021140.2	1355	ata/atAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220452	123220452	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	316	573	0	ENST00000218089.9:c.3109del	p.Val1037CysfsTer5	p.V1037Cfs*5	ENST00000218089	NM_001042749.1	1037	Gtg/tg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267491	198267491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	52	309	0	ENST00000335508.6:c.1866G>T	p.Glu622Asp	p.E622D	ENST00000335508	NM_012433.2	622	gaG/gaT																																																																														
PREX2	80243	MSKCC	GRCh37	8	68939550	68939550	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	38	246	0	ENST00000288368.4:c.535A>T	p.Ile179Phe	p.I179F	ENST00000288368	NM_024870.2	179	Att/Ttt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	208	865	2	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	89	317	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	318	830	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275751	41275751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	177	539	0	ENST00000349496.5:c.1646G>A	p.Arg549His	p.R549H	ENST00000349496	NM_001904.3	549	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112162946	112162946	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	107	277	0	ENST00000257430.4:c.1548+2T>C		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861171	57861171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	129	587	0	ENST00000228682.2:c.968G>A	p.Arg323Gln	p.R323Q	ENST00000228682	NM_005269.2	323	cGg/cAg																																																																														
BLM	641	MSKCC	GRCh37	15	91303452	91303452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	39	320	0	ENST00000355112.3:c.1163A>T	p.Asp388Val	p.D388V	ENST00000355112	NM_000057.2	388	gAt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	40	344	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0023552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	146	538	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
INSR	3643	MSKCC	GRCh37	19	7141702	7141702	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	45	410	0	ENST00000302850.5:c.2668C>T	p.Arg890Ter	p.R890*	ENST00000302850	NM_000208.2	890	Cga/Tga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	45	350	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
REL	5966	MSKCC	GRCh37	2	61147721	61147721	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	19	174	0	ENST00000295025.8:c.1031A>T	p.Glu344Val	p.E344V	ENST00000295025	NM_002908.2	344	gAg/gTg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	109	389	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646198	3646198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			680	309	676	1	ENST00000294008.3:c.1880C>T	p.Pro627Leu	p.P627L	ENST00000294008	NM_032444.2	627	cCg/cTg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371900	55371900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	98	364	0	ENST00000297316.4:c.590C>T	p.Pro197Leu	p.P197L	ENST00000297316	NM_022454.3	197	cCg/cTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027325-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	28	210	0	ENST00000342988.3:c.1156G>A	p.Gly386Ser	p.G386S	ENST00000342988	NM_005359.5	386	Ggt/Agt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057901	27057901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027325-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	97	522	1	ENST00000324856.7:c.1609C>T	p.Gln537Ter	p.Q537*	ENST00000324856	NM_006015.4	537	Cag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69009305	69009305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027325-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	21	313	0	ENST00000288368.4:c.2422G>A	p.Val808Met	p.V808M	ENST00000288368	NM_024870.2	808	Gtg/Atg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740620	145740620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027325-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			573	124	659	0	ENST00000428558.2:c.1397C>T	p.Pro466Leu	p.P466L	ENST00000428558	NM_004260.3	466	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			361	122	367	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0033566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	174	335	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
PGR	5241	MSKCC	GRCh37	11	100933406	100933406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150584881		P-0033566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	123	353	0	ENST00000325455.5:c.1984G>A	p.Val662Ile	p.V662I	ENST00000325455	NM_001202474.3	662	Gtt/Att																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98218623	98218623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	92	464	0	ENST00000331920.6:c.3241G>A	p.Val1081Met	p.V1081M	ENST00000331920	NM_000264.3	1081	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0033566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	346	743	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
DUSP4	1846	MSKCC	GRCh37	8	29194905	29194905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			887	193	769	0	ENST00000240100.2:c.823C>T	p.Arg275Cys	p.R275C	ENST00000240100	NM_001394.6	275	Cgc/Tgc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39709868	39709870	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0033566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	40	166	1	ENST00000361337.2:c.504_506del	p.Glu169del	p.E169del	ENST00000361337	NM_003286.2	165	ctAGAa/cta																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779184	3779184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	119	538	0	ENST00000262367.5:c.5864C>T	p.Ala1955Val	p.A1955V	ENST00000262367	NM_004380.2	1955	gCg/gTg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193094272	193094272	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	110	386	0	ENST00000367435.3:c.162C>G	p.Tyr54Ter	p.Y54*	ENST00000367435	NM_024529.4	54	taC/taG																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411510	63411510	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			701	470	775	1	ENST00000330258.3:c.1657del	p.Ala553GlnfsTer9	p.A553Qfs*9	ENST00000330258	NM_152424.3	553	Gca/ca																																																																														
ATRX	546	MSKCC	GRCh37	X	76872097	76872097	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0033566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	83	360	0	ENST00000373344.5:c.5550C>G	p.Tyr1850Ter	p.Y1850*	ENST00000373344	NM_000489.3	1850	taC/taG																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78831644	78831644	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			842	170	634	0	ENST00000306801.3:c.1453C>T	p.Arg485Ter	p.R485*	ENST00000306801	NM_020761.2	485	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70354985	70354985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033566-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			988	190	655	1	ENST00000374080.3:c.4907G>A	p.Arg1636His	p.R1636H	ENST00000374080		1636	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	18	194	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
INSR	3643	MSKCC	GRCh37	19	7120734	7120734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	123	551	0	ENST00000302850.5:c.3556G>A	p.Glu1186Lys	p.E1186K	ENST00000302850	NM_000208.2	1186	Gaa/Aaa																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874151	155874151	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	32	402	0	ENST00000368323.3:c.380C>G	p.Thr127Arg	p.T127R	ENST00000368323	NM_006912.5	127	aCa/aGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579564	7579565	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0035237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	153	486	0	ENST00000269305.4:c.122_123del	p.Asp41GlyfsTer10	p.D41Gfs*10	ENST00000269305	NM_001126112.2	41	gAT/g																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905321	50905321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	56	873	0	ENST00000440232.2:c.529C>G	p.Arg177Gly	p.R177G	ENST00000440232	NM_002691.3	177	Cgc/Ggc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71064711	71064711	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	19	230	2	ENST00000318789.4:c.963A>T	p.Gln321His	p.Q321H	ENST00000318789	NM_032682.5	321	caA/caT																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798562	32798562	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	35	415	0	ENST00000374899.4:c.1294del	p.Asp432IlefsTer37	p.D432Ifs*37	ENST00000374899	NM_018833.2	432	Gat/at																																																																														
ARAF	369	MSKCC	GRCh37	X	47426686	47426686	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	34	547	1	ENST00000377045.4:c.931C>T	p.Gln311Ter	p.Q311*	ENST00000377045	NM_001654.4	311	Cag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	283	647	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937684	76937684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	169	492	0	ENST00000373344.5:c.3064C>T	p.Arg1022Ter	p.R1022*	ENST00000373344	NM_000489.3	1022	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42041062	42041062	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			694	187	731	0	ENST00000219905.7:c.5440T>G	p.Leu1814Val	p.L1814V	ENST00000219905	NM_001164273.1	1814	Ttg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	41	392	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			932	149	925	1	ENST00000326873.7:c.667G>A	p.Glu223Lys	p.E223K	ENST00000326873	NM_000455.4	223	Gag/Aag																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987135	36987135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			774	80	840	0	ENST00000354822.5:c.554del	p.Pro185ArgfsTer43	p.P185Rfs*43	ENST00000354822	NM_001079668.2	185	cCg/cg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306605	41306605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			754	56	758	0	ENST00000373198.4:c.1054C>A	p.Pro352Thr	p.P352T	ENST00000373198	NM_133170.3	352	Ccc/Acc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544093	18544093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	35	273	0	ENST00000266497.5:c.1910C>A	p.Pro637His	p.P637H	ENST00000266497		637	cCt/cAt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093389	30093389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	48	436	1	ENST00000331968.5:c.1874G>T	p.Ser625Ile	p.S625I	ENST00000331968	NM_002742.2	625	aGc/aTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968239	2968239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	90	901	0	ENST00000396946.4:c.1747C>A	p.His583Asn	p.H583N	ENST00000396946	NM_032415.4	583	Cat/Aat																																																																														
ATRX	546	MSKCC	GRCh37	X	76829747	76829747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	62	276	0	ENST00000373344.5:c.6294G>T	p.Trp2098Cys	p.W2098C	ENST00000373344	NM_000489.3	2098	tgG/tgT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	395	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781157	135781157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	371	601	0	ENST00000298552.3:c.1808C>T	p.Pro603Leu	p.P603L	ENST00000298552	NM_001162426.1	603	cCg/cTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467885	66467885	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046303-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	109	311	0	ENST00000273854.3:c.384A>G	p.Ile128Met	p.I128M	ENST00000273854	NM_004439.5	128	atA/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	88	643	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs121913482		P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	67	573	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696676	176696676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	24	322	0	ENST00000439151.2:c.5377G>A	p.Glu1793Lys	p.E1793K	ENST00000439151	NM_022455.4	1793	Gag/Aag																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577469	64577469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	70	657	0	ENST00000337652.1:c.113C>T	p.Ser38Phe	p.S38F	ENST00000337652	NM_130803.2	38	tCc/tTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001422	29001422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	44	348	0	ENST00000282397.4:c.1310C>T	p.Ser437Leu	p.S437L	ENST00000282397	NM_002019.4	437	tCg/tTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448624	89448624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	75	447	0	ENST00000336596.2:c.1588C>T	p.Pro530Ser	p.P530S	ENST00000336596	NM_005233.5	530	Cca/Tca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123826	46123826	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	24	297	0	ENST00000334344.6:c.93-1G>A		p.X31_splice	ENST00000334344	NM_152641.2	31																																																																															
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	43	345	0				ENST00000310581	NM_198253.2																																																																																
PDCD1	5133	MSKCC	GRCh37	2	242793340	242793340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201540918		P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	73	729	1	ENST00000334409.5:c.737C>T	p.Thr246Met	p.T246M	ENST00000334409	NM_005018.2	246	aCg/aTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242646	16242646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	53	346	2	ENST00000375759.3:c.1267C>T	p.Arg423Cys	p.R423C	ENST00000375759	NM_015001.2	423	Cgc/Tgc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864328	57864328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201538749		P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	70	629	0	ENST00000228682.2:c.1805C>T	p.Ser602Leu	p.S602L	ENST00000228682	NM_005269.2	602	tCg/tTg																																																																														
SRC	6714	MSKCC	GRCh37	20	36012684	36012684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	14	131	0	ENST00000358208.4:c.128C>T	p.Ser43Leu	p.S43L	ENST00000358208		43	tCg/tTg																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839778	27839778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	76	524	0	ENST00000328488.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000328488	NM_003533.2	106	Gag/Aag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954874	2954874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	70	590	0	ENST00000396946.4:c.2836G>A	p.Glu946Lys	p.E946K	ENST00000396946	NM_032415.4	946	Gaa/Aaa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426640	121426640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	60	524	0	ENST00000257555.6:c.331G>A	p.Asp111Asn	p.D111N	ENST00000257555		111	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	37	429	0				ENST00000310581	NM_198253.2																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134911522	134911522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	73	539	0	ENST00000398015.3:c.1987C>T	p.Arg663Trp	p.R663W	ENST00000398015	NM_004441.4	663	Cgg/Tgg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696411	47696411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	58	526	0	ENST00000347630.2:c.412C>T	p.Arg138Cys	p.R138C	ENST00000347630	NM_001007230.1	138	Cgt/Tgt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270165	66270165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	37	284	0	ENST00000273854.3:c.1717C>T	p.Pro573Ser	p.P573S	ENST00000273854	NM_004439.5	573	Cct/Tct																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852174	63852174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	65	493	0	ENST00000279873.7:c.2952G>C	p.Glu984Asp	p.E984D	ENST00000279873	NM_032199.2	984	gaG/gaC																																																																														
NF1	4763	MSKCC	GRCh37	17	29541511	29541511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	28	279	0	ENST00000358273.4:c.1435G>A	p.Glu479Lys	p.E479K	ENST00000358273	NM_001042492.2	479	Gaa/Aaa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073809	8073809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	40	330	1	ENST00000377482.5:c.850C>T	p.Pro284Ser	p.P284S	ENST00000377482	NM_018948.3	284	Ccc/Tcc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258634	16258634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	47	467	0	ENST00000375759.3:c.5899G>A	p.Glu1967Lys	p.E1967K	ENST00000375759	NM_015001.2	1967	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260102	16260102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	74	589	0	ENST00000375759.3:c.7367G>A	p.Ser2456Asn	p.S2456N	ENST00000375759	NM_015001.2	2456	aGt/aAt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797363	45797363	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	76	606	0	ENST00000372115.3:c.1114C>T	p.Gln372Ter	p.Q372*	ENST00000372115	NM_001048171.1	372	Caa/Taa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310491	65310491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	61	533	0	ENST00000342505.4:c.2197C>T	p.Pro733Ser	p.P733S	ENST00000342505	NM_002227.2	733	Cca/Tca																																																																														
NUF2	83540	MSKCC	GRCh37	1	163306540	163306540	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	37	333	0	ENST00000271452.3:c.338-1G>A		p.X113_splice	ENST00000271452	NM_145697.2	113																																																																															
PARP1	142	MSKCC	GRCh37	1	226568903	226568903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	40	347	0	ENST00000366794.5:c.1166C>T	p.Pro389Leu	p.P389L	ENST00000366794	NM_001618.3	389	cCa/cTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70333704	70333704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	41	483	0	ENST00000373644.4:c.1609G>A	p.Gly537Ser	p.G537S	ENST00000373644	NM_030625.2	537	Ggt/Agt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88659865	88659866	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	29	293	0	ENST00000372037.3:c.512_513delinsTT	p.Ser171Phe	p.S171F	ENST00000372037	NM_004329.2	171	tCC/tTT																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325061	123325062	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	57	609	1	ENST00000358487.5:c.266_267delinsAA	p.Gly89Glu	p.G89E	ENST00000358487	NM_000141.4	89	gGG/gAA																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577346	64577347	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	85	718	0	ENST00000337652.1:c.235_236delinsTT	p.Pro79Phe	p.P79F	ENST00000337652	NM_130803.2	79	CCc/TTc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200211	67200211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	83	708	0	ENST00000312629.5:c.519C>G	p.Phe173Leu	p.F173L	ENST00000312629	NM_003952.2	173	ttC/ttG																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373994	118373996	+	missense_variant	Missense_Mutation	ONP	TTG	TTG	ACT			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	26	366	0	ENST00000534358.1:c.7387_7389delinsACT	p.Leu2463Thr	p.L2463T	ENST00000534358	NM_005933.3	2463	TTG/ACT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398231	25398231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	35	350	0	ENST00000256078.4:c.88G>A	p.Asp30Asn	p.D30N	ENST00000256078	NM_033360.2	30	Gac/Aac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123826	46123827	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	24	304	0	ENST00000334344.6:c.93-1_93delinsAA		p.X31_splice	ENST00000334344	NM_152641.2	31																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245201	46245202	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	57	469	0	ENST00000334344.6:c.3296_3297del	p.Tyr1099SerfsTer5	p.Y1099Sfs*5	ENST00000334344	NM_152641.2	1099	TAt/t																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438628	49438628	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	81	600	0	ENST00000301067.7:c.4862del	p.Pro1621GlnfsTer101	p.P1621Qfs*101	ENST00000301067	NM_003482.3	1621	cCa/ca																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865387	57865393	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTGCC	ACTTGCC	-			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	86	847	0	ENST00000228682.2:c.2864_2870del	p.Asn955ThrfsTer19	p.N955Tfs*19	ENST00000228682	NM_005269.2	955	aACTTGCCc/ac																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856473	111856473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	46	288	0	ENST00000341259.2:c.524G>A	p.Arg175Gln	p.R175Q	ENST00000341259	NM_005475.2	175	cGg/cAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911309	32911310	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	43	417	2	ENST00000380152.3:c.2817_2818delinsTT	p.Gln940Ter	p.Q940*	ENST00000380152		939	acCCaa/acTTaa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	338185	338185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	101	755	0	ENST00000262320.3:c.2526G>C	p.Glu842Asp	p.E842D	ENST00000262320	NM_003502.3	842	gaG/gaC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845600	72845600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	75	755	0	ENST00000268489.5:c.3740C>T	p.Ser1247Leu	p.S1247L	ENST00000268489	NM_006885.3	1247	tCg/tTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341235	89341235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	72	534	0	ENST00000301030.4:c.7700C>T	p.Pro2567Leu	p.P2567L	ENST00000301030	NM_001256183.1	2567	cCc/cTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347677	89347678	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	65	651	0	ENST00000301030.4:c.5272_5273delinsTT	p.Pro1758Phe	p.P1758F	ENST00000301030	NM_001256183.1	1758	CCc/TTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351134	89351134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	92	655	1	ENST00000301030.4:c.1816G>A	p.Glu606Lys	p.E606K	ENST00000301030	NM_001256183.1	606	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965209	15965209	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	32	291	0	ENST00000268712.3:c.5388-1G>A		p.X1796_splice	ENST00000268712	NM_006311.3	1796																																																																															
BRCA1	672	MSKCC	GRCh37	17	41226362	41226362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	73	473	0	ENST00000357654.3:c.4661C>T	p.Pro1554Leu	p.P1554L	ENST00000357654	NM_007294.3	1554	cCa/cTa																																																																														
STK11	6794	MSKCC	GRCh37	19	1206978	1206979	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	86	597	0	ENST00000326873.7:c.66_67delinsAA	p.Met22_Asp23delinsIleAsn	p.M22_D23delinsIN	ENST00000326873	NM_000455.4	22	atGGac/atAAac																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10251547	10251547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	74	610	0	ENST00000340748.4:c.3385G>A	p.Glu1129Lys	p.E1129K	ENST00000340748		1129	Gag/Aag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10254580	10254580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	54	565	0	ENST00000340748.4:c.2930C>T	p.Ser977Phe	p.S977F	ENST00000340748		977	tCc/tTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271584	15271585	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	91	802	1	ENST00000263388.2:c.6854_6855delinsAA	p.Gly2285Glu	p.G2285E	ENST00000263388	NM_000435.2	2285	gGG/gAA																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276323	15276323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	77	643	0	ENST00000263388.2:c.5671C>T	p.Leu1891Phe	p.L1891F	ENST00000263388	NM_000435.2	1891	Ctc/Ttc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303214	15303214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	98	801	0	ENST00000263388.2:c.314C>T	p.Ser105Leu	p.S105L	ENST00000263388	NM_000435.2	105	tCa/tTa																																																																														
ALK	238	MSKCC	GRCh37	2	29420411	29420411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	59	511	0	ENST00000389048.3:c.4070C>T	p.Pro1357Leu	p.P1357L	ENST00000389048	NM_004304.4	1357	cCt/cTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248675	212248675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	45	424	1	ENST00000342788.4:c.3592G>A	p.Ala1198Thr	p.A1198T	ENST00000342788	NM_005235.2	1198	Gcc/Acc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251730	212251730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	52	392	0	ENST00000342788.4:c.3329C>T	p.Thr1110Ile	p.T1110I	ENST00000342788	NM_005235.2	1110	aCc/aTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022460	31022460	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	39	312	0	ENST00000375687.4:c.1945G>T	p.Gly649Ter	p.G649*	ENST00000375687	NM_015338.5	649	Gga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31025056	31025056	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	69	448	0	ENST00000375687.4:c.4541T>G	p.Ile1514Ser	p.I1514S	ENST00000375687	NM_015338.5	1514	aTc/aGc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45657032	45657032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	56	485	0	ENST00000407780.3:c.124G>A	p.Gly42Arg	p.G42R	ENST00000407780	NM_001283052.1	42	Gga/Aga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960001	134960002	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	42	445	0	ENST00000398015.3:c.2358_2359delinsTT	p.Pro787Ser	p.P787S	ENST00000398015	NM_004441.4	786	atCCct/atTTct																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520241	176520242	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	72	751	2	ENST00000292408.4:c.1160_1161delinsTT	p.Ala387Val	p.A387V	ENST00000292408	NM_213647.1	387	gCC/gTT																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225655	26225655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	66	521	0	ENST00000360408.1:c.273G>T	p.Met91Ile	p.M91I	ENST00000360408	NM_003532.2	91	atG/atT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32183160	32183160	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	81	607	0	ENST00000375023.3:c.1864C>T	p.Gln622Ter	p.Q622*	ENST00000375023	NM_004557.3	622	Cag/Tag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955130	93955130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	55	377	1	ENST00000369303.4:c.2768C>A	p.Thr923Asn	p.T923N	ENST00000369303	NM_004440.3	923	aCt/aAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674294	117674294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	85	433	0	ENST00000368508.3:c.4180C>T	p.Leu1394Phe	p.L1394F	ENST00000368508	NM_002944.2	1394	Ctt/Ttt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879415	151879415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	61	454	0	ENST00000262189.6:c.5530G>A	p.Asp1844Asn	p.D1844N	ENST00000262189	NM_170606.2	1844	Gat/Aat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139407587	139407587	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	157	626	0	ENST00000277541.6:c.2354-1G>A		p.X785_splice	ENST00000277541	NM_017617.3	785																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0046443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	200	370	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
AKT1	207	MSKCC	GRCh37	14	105258975	105258975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	97	658	0	ENST00000349310.3:c.6C>A	p.Ser2Arg	p.S2R	ENST00000349310	NM_001014432.1	2	agC/agA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	23	434	0				ENST00000310581	NM_198253.2																																																																																
POLE	5426	MSKCC	GRCh37	12	133236053	133236053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	58	492	0	ENST00000320574.5:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000320574	NM_006231.2	1035	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866707	37866707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	107	719	0	ENST00000269571.5:c.874G>C	p.Gly292Arg	p.G292R	ENST00000269571		292	Ggc/Cgc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230707	46230707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	53	288	0	ENST00000334344.6:c.956C>T	p.Ser319Phe	p.S319F	ENST00000334344	NM_152641.2	319	tCt/tTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098465	11098465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	47	537	0	ENST00000344626.4:c.983C>T	p.Pro328Leu	p.P328L	ENST00000344626	NM_003072.3	328	cCg/cTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910545	32910545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	82	256	0	ENST00000380152.3:c.2053G>A	p.Asp685Asn	p.D685N	ENST00000380152		685	Gat/Aat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265477	198265477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	109	390	0	ENST00000335508.6:c.2680G>C	p.Asp894His	p.D894H	ENST00000335508	NM_012433.2	894	Gat/Cat																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379718	17379718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	69	745	0	ENST00000359435.4:c.103G>A	p.Glu35Lys	p.E35K	ENST00000359435	NM_001033549.1	35	Gag/Aag																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115266609	115266609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	104	481	0	ENST00000438362.2:c.1906G>A	p.Glu636Lys	p.E636K	ENST00000438362	NM_001242891.1	636	Gag/Aag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906718	32906718	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	40	437	0	ENST00000380152.3:c.1103C>G	p.Ser368Ter	p.S368*	ENST00000380152		368	tCa/tGa																																																																														
EP300	2033	MSKCC	GRCh37	22	41525912	41525912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	82	333	0	ENST00000263253.7:c.1187C>G	p.Ser396Cys	p.S396C	ENST00000263253	NM_001429.3	396	tCt/tGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55599246	55599246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	37	294	0	ENST00000288135.5:c.2372G>A	p.Arg791Lys	p.R791K	ENST00000288135	NM_000222.2	791	aGa/aAa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970829	79970829	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	29	320	0	ENST00000265081.6:c.1055A>T	p.Asp352Val	p.D352V	ENST00000265081	NM_002439.4	352	gAt/gTt																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858539	27858539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	31	281	0	ENST00000359303.2:c.32C>T	p.Ser11Phe	p.S11F	ENST00000359303	NM_003535.2	11	tCt/tTt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44913149	44913151	+	frameshift_variant	Frame_Shift_Del	DEL	AGT	AGT	GG			P-0046646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	167	234	0	ENST00000377967.4:c.824_826delinsGG	p.Lys275ArgfsTer50	p.K275Rfs*50	ENST00000377967	NM_021140.2	275	aAGTcc/aGGcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29587386	29587386	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	45	279	0	ENST00000358273.4:c.4431-1G>A		p.X1477_splice	ENST00000358273	NM_001042492.2	1477																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589570	67589593	+	protein_altering_variant	In_Frame_Del	DEL	GTAGGGAAAAAATTACATGAATAT	GTAGGGAAAAAATTACATGAATAT	AGCTTC			P-0046647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	34	168	0	ENST00000274335.5:c.1333_1356delinsAGCTTC	p.Val445_Tyr452delinsSerPhe	p.V445_Y452delinsSF	ENST00000274335		445	GTAGGGAAAAAATTACATGAATAT/AGCTTC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	312	637	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	128	494	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	64	288	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	50	300	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	54	162	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193107258	193107258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	27	274	0	ENST00000367435.3:c.467G>A	p.Arg156His	p.R156H	ENST00000367435	NM_024529.4	156	cGt/cAt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982309	201982309	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	132	705	0	ENST00000359651.3:c.689-1G>A		p.X230_splice	ENST00000359651		230																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37873690	37873690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1246	168	717	0	ENST00000269571.5:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000269571		619	Gag/Aag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982113	201982113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	163	729	0	ENST00000359651.3:c.637G>A	p.Gly213Ser	p.G213S	ENST00000359651		213	Ggt/Agt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983150	201983150	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	77	507	1	ENST00000359651.3:c.999G>T	p.Met333Ile	p.M333I	ENST00000359651		333	atG/atT																																																																														
AKT3	10000	MSKCC	GRCh37	1	243727092	243727092	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	242	409	0	ENST00000263826.5:c.878G>T	p.Cys293Phe	p.C293F	ENST00000263826	NM_005465.4	293	tGc/tTc																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813469	102813469	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	114	492	0	ENST00000307046.8:c.221-1G>C		p.X74_splice	ENST00000307046	NM_001111285.1	74																																																																															
FANCA	2175	MSKCC	GRCh37	16	89882283	89882283	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	92	387	0	ENST00000389301.3:c.189+2T>A		p.X63_splice	ENST00000389301	NM_000135.2	63																																																																															
ACVR1	90	MSKCC	GRCh37	2	158594066	158594066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	43	273	0	ENST00000263640.3:c.1507G>T	p.Asp503Tyr	p.D503Y	ENST00000263640	NM_001105.4	503	Gac/Tac																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741644	145741644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	156	771	0	ENST00000428558.2:c.859G>A	p.Glu287Lys	p.E287K	ENST00000428558	NM_004260.3	287	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341925	8341925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	48	395	0	ENST00000356435.5:c.4715G>C	p.Arg1572Thr	p.R1572T	ENST00000356435		1572	aGa/aCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	154	461	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0046649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	209	620	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191804	123191805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	81	156	0	ENST00000218089.9:c.1400dupT	p.Phe468LeufsTer5	p.F468Lfs*5	ENST00000218089	NM_001042749.1	465	gtt/gTtt																																																																														
BBC3	27113	MSKCC	GRCh37	19	47725146	47725146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	255	989	0	ENST00000449228.1:c.598C>G	p.Leu200Val	p.L200V	ENST00000449228	NM_001127240.2	200	Ctc/Gtc																																																																														
EP300	2033	MSKCC	GRCh37	22	41564872	41564872	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	176	513	1	ENST00000263253.7:c.4172+1G>T		p.X1391_splice	ENST00000263253	NM_001429.3	1391																																																																															
RAF1	5894	MSKCC	GRCh37	3	12660106	12660106	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	169	437	0	ENST00000251849.4:c.115C>T	p.Gln39Ter	p.Q39*	ENST00000251849	NM_002880.3	39	Cag/Tag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797252	135797252	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	79	222	1	ENST00000298552.3:c.617A>C	p.His206Pro	p.H206P	ENST00000298552	NM_001162426.1	206	cAt/cCt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44870218	44870219	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0046649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	110	199	0	ENST00000377967.4:c.401_402dup	p.Gly135MetfsTer46	p.G135Mfs*46	ENST00000377967	NM_021140.2	133	tta/tTAta																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098957	178098957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	72	273	0	ENST00000397062.3:c.88C>T	p.Leu30Phe	p.L30F	ENST00000397062	NM_006164.4	30	Ctt/Ttt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354342	354342	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	377	811	0	ENST00000262320.3:c.1216G>T	p.Glu406Ter	p.E406*	ENST00000262320	NM_003502.3	406	Gag/Tag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981536	201981536	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1494	93	843	0	ENST00000359651.3:c.450C>G	p.Phe150Leu	p.F150L	ENST00000359651		150	ttC/ttG																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376713	8376713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	192	396	0	ENST00000356435.5:c.4400A>T	p.Gln1467Leu	p.Q1467L	ENST00000356435		1467	cAg/cTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0046651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	80	318	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182196	99182196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	11	538	0	ENST00000074304.5:c.2261C>T	p.Ser754Phe	p.S754F	ENST00000074304	NM_001134224.1	754	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974770	21974770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	88	324	0	ENST00000304494.5:c.57del	p.Ala20ArgfsTer6	p.A20Rfs*6	ENST00000304494	NM_000077.4	19	gcC/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974770	21974770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	88	324	0	ENST00000304494.5:c.57del	p.Ala20ArgfsTer6	p.A20Rfs*6	ENST00000304494	NM_000077.4	19	gcC/gc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151902221	151902221	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	18	523	0	ENST00000262189.6:c.3931A>G	p.Ile1311Val	p.I1311V	ENST00000262189	NM_170606.2	1311	Att/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579360	7579368	+	inframe_deletion	In_Frame_Del	DEL	GAAACCGTA	GAAACCGTA	-			P-0046651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	172	710	0	ENST00000269305.4:c.319_327del	p.Tyr107_Phe109del	p.Y107_F109del	ENST00000269305	NM_001126112.2	107	TACGGTTTC/-																																																																														
MALT1	10892	MSKCC	GRCh37	18	56400629	56400629	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	63	173	1	ENST00000348428.3:c.1223G>T	p.Gly408Val	p.G408V	ENST00000348428	NM_006785.3	408	gGg/gTg																																																																														
ERF	2077	MSKCC	GRCh37	19	42759146	42759146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	132	375	0	ENST00000222329.4:c.6G>C	p.Lys2Asn	p.K2N	ENST00000222329	NM_006494.2	2	aaG/aaC																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443626	52443626	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0046651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	198	475	0	ENST00000460680.1:c.68-2A>T		p.X23_splice	ENST00000460680	NM_004656.3	23																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609722	117609722	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	25	415	0	ENST00000368508.3:c.6977C>G	p.Ser2326Cys	p.S2326C	ENST00000368508	NM_002944.2	2326	tCt/tGt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402819	139402820	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0046651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	138	783	0	ENST00000277541.6:c.3189_3190delTG	p.Cys1063Ter	p.C1063*	ENST00000277541	NM_017617.3	1063	tgTGac/tgac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	435	413	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	353	489	0	ENST00000269305.4:c.374C>G	p.Thr125Arg	p.T125R	ENST00000269305	NM_001126112.2	125	aCg/aGg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119325	3119325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	132	648	0	ENST00000078429.4:c.857C>T	p.Ser286Leu	p.S286L	ENST00000078429	NM_002067.2	286	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143985	11143985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	131	540	0	ENST00000344626.4:c.3566G>A	p.Arg1189Gln	p.R1189Q	ENST00000344626	NM_003072.3	1189	cGa/cAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255772	16255772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	77	367	0	ENST00000375759.3:c.3037C>T	p.Arg1013Cys	p.R1013C	ENST00000375759	NM_015001.2	1013	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023303	27023303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	76	225	0	ENST00000324856.7:c.409C>T	p.His137Tyr	p.H137Y	ENST00000324856	NM_006015.4	137	Cac/Tac																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115889	8115889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	150	533	0	ENST00000346208.3:c.1235C>T	p.Ser412Phe	p.S412F	ENST00000346208		412	tCc/tTc																																																																														
RB1	5925	MSKCC	GRCh37	13	49033906	49033906	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	183	356	0	ENST00000267163.4:c.2043G>A	p.Trp681Ter	p.W681*	ENST00000267163	NM_000321.2	681	tgG/tgA																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250440	26250440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	105	426	0	ENST00000446824.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000446824	NM_021018.2	132	Cgc/Tgc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28601351	28601351	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	115	510	0	ENST00000253063.3:c.1036G>C	p.Asp346His	p.D346H	ENST00000253063	NM_031459.4	346	Gac/Cac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985510	2985510	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	99	475	0	ENST00000396946.4:c.301G>C	p.Glu101Gln	p.E101Q	ENST00000396946	NM_032415.4	101	Gaa/Caa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63526141	63526141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	319	590	0	ENST00000307078.5:c.2485C>T	p.Pro829Ser	p.P829S	ENST00000307078	NM_004655.3	829	Ccg/Tcg																																																																														
FH	2271	MSKCC	GRCh37	1	241682952	241682952	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	75	528	0	ENST00000366560.3:c.71C>A	p.Ser24Ter	p.S24*	ENST00000366560	NM_000143.3	24	tCg/tAg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104352338	104352338	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	93	388	0	ENST00000369902.3:c.455-1G>A		p.X152_splice	ENST00000369902	NM_016169.3	152																																																																															
ATM	472	MSKCC	GRCh37	11	108202753	108202753	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	65	275	0	ENST00000278616.4:c.7777C>G	p.Gln2593Glu	p.Q2593E	ENST00000278616	NM_000051.3	2593	Cag/Gag																																																																														
MGA	23269	MSKCC	GRCh37	15	42003086	42003086	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	116	515	0	ENST00000219905.7:c.2623C>T	p.Gln875Ter	p.Q875*	ENST00000219905	NM_001164273.1	875	Caa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286779	212286779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	37	357	0	ENST00000342788.4:c.2917G>C	p.Glu973Gln	p.E973Q	ENST00000342788	NM_005235.2	973	Gag/Cag																																																																														
TP63	8626	MSKCC	GRCh37	3	189612200	189612200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	121	519	0	ENST00000264731.3:c.1952C>T	p.Ser651Phe	p.S651F	ENST00000264731	NM_003722.4	651	tCt/tTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465621	8465621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	118	361	0	ENST00000356435.5:c.3559G>A	p.Glu1187Lys	p.E1187K	ENST00000356435		1187	Gaa/Aaa																																																																														
ABL1	25	MSKCC	GRCh37	9	133710875	133710875	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	90	558	0	ENST00000318560.5:c.42G>C	p.Lys14Asn	p.K14N	ENST00000318560	NM_005157.4	14	aaG/aaC																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0046654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	98	322	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	586	767	2	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900949	114900949	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	120	447	0	ENST00000543371.1:c.561del	p.Val188CysfsTer37	p.V188Cfs*37	ENST00000543371	NM_001198531.1	187	Aaa/aa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408894	41408894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	47	372	0	ENST00000373198.4:c.532G>T	p.Ala178Ser	p.A178S	ENST00000373198	NM_133170.3	178	Gcc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112175277	112175278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	43	180	0	ENST00000257430.4:c.3989dup	p.Arg1331Ter	p.R1331*	ENST00000257430	NM_000038.5	1329	cac/caCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	71	631	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1255443	1255443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	34	548	0	ENST00000310581.5:c.3116C>T	p.Thr1039Met	p.T1039M	ENST00000310581	NM_198253.2	1039	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	111	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572189	64572189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	119	661	2	ENST00000337652.1:c.1465C>T	p.Arg489Trp	p.R489W	ENST00000337652	NM_130803.2	489	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974786	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	55	260	0	ENST00000304494.5:c.41_44delACTG	p.Asp14GlyfsTer11	p.D14Gfs*11	ENST00000304494	NM_000077.4	14	gACTGg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974786	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	55	260	0	ENST00000304494.5:c.41_44delACTG	p.Asp14GlyfsTer11	p.D14Gfs*11	ENST00000304494	NM_000077.4	14	gACTGg/gg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907037	101907037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	40	261	0	ENST00000374994.4:c.997G>C	p.Asp333His	p.D333H	ENST00000374994	NM_004612.2	333	Gat/Cat																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940720	71940720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	109	659	0	ENST00000298229.2:c.767C>G	p.Thr256Arg	p.T256R	ENST00000298229	NM_001567.3	256	aCa/aGa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434414	110434414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	129	807	0	ENST00000375856.3:c.3987C>G	p.His1329Gln	p.H1329Q	ENST00000375856	NM_003749.2	1329	caC/caG																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135378	30135378	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	33	322	0	ENST00000331968.5:c.440del	p.His147ProfsTer36	p.H147Pfs*36	ENST00000331968	NM_002742.2	147	cAc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	162	804	2	ENST00000269305.4:c.487del	p.Tyr163ThrfsTer7	p.Y163Tfs*7	ENST00000269305	NM_001126112.2	163	Tac/ac																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981594	70981594	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	104	957	0	ENST00000276594.2:c.502C>G	p.Gln168Glu	p.Q168E	ENST00000276594	NM_024504.3	168	Cag/Gag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772013	135772013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	85	473	0	ENST00000298552.3:c.3104G>T	p.Gly1035Val	p.G1035V	ENST00000298552	NM_001162426.1	1035	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579354	7579355	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGA			P-0046676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	287	773	0	ENST00000269305.4:c.330_332dup	p.Leu111dup	p.L111dup	ENST00000269305	NM_001126112.2	111	ctg/ctTCTg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128050212	128050212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	165	425	0	ENST00000285398.2:c.445C>G	p.Pro149Ala	p.P149A	ENST00000285398	NM_000122.1	149	Cct/Gct																																																																														
WT1	7490	MSKCC	GRCh37	11	32417887	32417887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	186	524	0	ENST00000332351.3:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000332351	NM_024426.4	389	Cgc/Tgc																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540206	23540207	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTCCTCCCTCTGGCTCTGGCTCTGGCTCCGGCTCCGG			P-0046680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	94	425	0	ENST00000380871.4:c.160_196dup	p.Arg66ProfsTer54	p.R66Pfs*54	ENST00000380871	NM_006167.3	66	cgc/cCCGGAGCCGGAGCCAGAGCCAGAGCCAGAGGGAGGACgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	30	315	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	241	744	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879881	37879881	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	52	866	0	ENST00000269571.5:c.2176C>G	p.Leu726Val	p.L726V	ENST00000269571		726	Ctt/Gtt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151853065	151853065	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	58	345	0	ENST00000262189.6:c.11890C>T	p.Gln3964Ter	p.Q3964*	ENST00000262189	NM_170606.2	3964	Cag/Tag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004226	150004226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	48	178	0	ENST00000253339.5:c.1999G>A	p.Glu667Lys	p.E667K	ENST00000253339		667	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257893	16257893	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	57	505	0	ENST00000375759.3:c.5158G>C	p.Glu1720Gln	p.E1720Q	ENST00000375759	NM_015001.2	1720	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431975	49431975	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	88	695	1	ENST00000301067.7:c.9164del	p.Pro3055LeufsTer16	p.P3055Lfs*16	ENST00000301067	NM_003482.3	3055	cCt/ct																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004295	150004295	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	56	236	0	ENST00000253339.5:c.1930G>C	p.Glu644Gln	p.E644Q	ENST00000253339		644	Gag/Cag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004355	150004355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	77	319	0	ENST00000253339.5:c.1870G>A	p.Glu624Lys	p.E624K	ENST00000253339		624	Gaa/Aaa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265438	152265438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	35	435	0	ENST00000206249.3:c.891G>A	p.Met297Ile	p.M297I	ENST00000206249	NM_000125.3	297	atG/atA																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099784	157099785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	64	338	0	ENST00000346085.5:c.722dup	p.Ser241ArgfsTer13	p.S241Rfs*13	ENST00000346085	NM_020732.3	241	agc/aGgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845440	151845440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	42	558	0	ENST00000262189.6:c.13572G>T	p.Arg4524Ser	p.R4524S	ENST00000262189	NM_170606.2	4524	agG/agT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874686	151874686	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	91	392	1	ENST00000262189.6:c.7852C>T	p.Gln2618Ter	p.Q2618*	ENST00000262189	NM_170606.2	2618	Cag/Tag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87359917	87359918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	37	286	0	ENST00000277120.3:c.1226dup	p.Asp409GlufsTer7	p.D409Efs*7	ENST00000277120		409	gac/gAac																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195119	123195126	+	frameshift_variant	Frame_Shift_Del	DEL	GCTACTGA	GCTACTGA	-			P-0046690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	91	430	0	ENST00000218089.9:c.1465_1472del	p.Thr489AlafsTer9	p.T489Afs*9	ENST00000218089	NM_001042749.1	488	GCTACTGAg/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	31	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	39	485	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0046692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	27	337	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112162890	112162891	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTAT			P-0046692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	29	368	0	ENST00000257430.4:c.1495_1496insTATC	p.Arg499LeufsTer39	p.R499Lfs*39	ENST00000257430	NM_000038.5	498	-/CTAT																																																																														
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	150	582	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637555	52637555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	70	248	0	ENST00000394830.3:c.2761C>T	p.Arg921Ter	p.R921*	ENST00000394830	NM_018313.4	921	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258970	153258970	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	51	172	0	ENST00000281708.4:c.845C>A	p.Ser282Ter	p.S282*	ENST00000281708	NM_033632.3	282	tCa/tAa																																																																														
CASP8	841	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	139	449	0	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564671	86564671	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	101	702	0	ENST00000274376.6:c.407del	p.Pro136LeufsTer38	p.P136Lfs*38	ENST00000274376	NM_002890.2	135	Ccc/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391458	139391458	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201613894		P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	121	803	1	ENST00000277541.6:c.6733G>A	p.Gly2245Arg	p.G2245R	ENST00000277541	NM_017617.3	2245	Ggg/Agg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426700	49426700	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	76	272	0	ENST00000301067.7:c.11788C>T	p.Gln3930Ter	p.Q3930*	ENST00000301067	NM_003482.3	3930	Cag/Tag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673717	176673717	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	78	231	0	ENST00000439151.2:c.4417C>T	p.Arg1473Ter	p.R1473*	ENST00000439151	NM_022455.4	1473	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433632	49433633	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	140	821	0	ENST00000301067.7:c.7920_7921del	p.Pro2641CysfsTer13	p.P2641Cfs*13	ENST00000301067	NM_003482.3	2640	tcTCct/tcct																																																																														
CARM1	10498	MSKCC	GRCh37	19	11024706	11024706	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139789571		P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	57	304	0	ENST00000327064.4:c.823G>A	p.Ala275Thr	p.A275T	ENST00000327064	NM_199141.1	275	Gcc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213908	36213909	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0046694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	93	618	0	ENST00000222270.7:c.2735_2736del	p.Ala912ValfsTer4	p.A912Vfs*4	ENST00000222270	NM_014727.1	912	GCg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	506	546	6	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	220	294	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	117	302	0	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112174438	112174438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	46	167	0	ENST00000257430.4:c.3147G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tgG/tgA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270144	66270144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	126	255	0	ENST00000273854.3:c.1738A>G	p.Thr580Ala	p.T580A	ENST00000273854	NM_004439.5	580	Aca/Gca																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604797	48604797	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	143	281	0	ENST00000342988.3:c.1619T>G	p.Leu540Arg	p.L540R	ENST00000342988	NM_005359.5	540	cTt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175244	112175245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0046699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	76	204	0	ENST00000257430.4:c.3954_3955dup	p.Pro1319LeufsTer3	p.P1319Lfs*3	ENST00000257430	NM_000038.5	1318	gat/gaTCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0046719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	204	610	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25973028	25973028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	132	364	0	ENST00000435504.4:c.1397C>T	p.Ser466Phe	p.S466F	ENST00000435504		466	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433060	49433060	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	289	795	0	ENST00000301067.7:c.8311C>T	p.Arg2771Ter	p.R2771*	ENST00000301067	NM_003482.3	2771	Cga/Tga																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750615	41750615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	103	378	2	ENST00000226382.2:c.13G>A	p.Glu5Lys	p.E5K	ENST00000226382	NM_003924.3	5	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425794	49425794	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	215	759	1	ENST00000301067.7:c.12694C>T	p.Gln4232Ter	p.Q4232*	ENST00000301067	NM_003482.3	4232	Cag/Tag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2099555	2100455	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGGCTCACGCCTGTCATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCGAAACCCCGTCTCTACTAAAAATACCAAAAATTAGCCGGTCATAGTGGTGGGCGCCTGTAATTCCAGCTACTCGGGGGGCTGAGACGAGAATTGCTTGAACCCGGGAGGCGGAGGTTTCAGTGAGCCGTGATCGCGCCACTGCACTCCATCCTGGGGAAGAAGAGCAAAACTCCGTCTAAAAAAAAATTGTGCAGTTTGAAATTGTATTTCATGTTATGTTTTATCTCAATACAACATTTGCAGTTGTGAAAAAAAATTGCACATTCTCAACTCCTCGGGATGGAGCAGTAAAGCCCCTCAGTAAATCTTTTTTTTTTTTTTTTTTTGAGACCGAGTTTCGCTCTTGTCACCCAGGCTGGAGCGCAGGGGCGCGATCTCGGCTCACTGCAATCTCCGCCTCCTGGGTTCAAGGGATTCTCCTGCCTCACTCTCCCGAGTAGCTGGGATTATAGACGCCCACCACCACGCCCAGCAAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCATCATGTTGGGCAGGCTGGTCTCAAACTCCTGACCTCTGGTGATCCACCTGCCTTGGCCCCCCAAAGTGCAGGGATTACAGGCCTGAGCCACCGCGGCTCGTCAAGTGAATCTTGATTCCAGAAAGATCTGTTTTAAGTCTCTAGTCTGGAAAATGCAGTGGGAGTCTTTAGGTGGTTTGTGACTTGCAGTTAAGGAGACCGTGGCCTGAGCACTGGCCCCTTTTTCTTCTTTCATCTCTCTCCAGGAACTGAGCATGGAATGTGGCCTCAACAATCGCATCCGGATGATAGGGCAGATTT	GTGGCTCACGCCTGTCATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCGAAACCCCGTCTCTACTAAAAATACCAAAAATTAGCCGGTCATAGTGGTGGGCGCCTGTAATTCCAGCTACTCGGGGGGCTGAGACGAGAATTGCTTGAACCCGGGAGGCGGAGGTTTCAGTGAGCCGTGATCGCGCCACTGCACTCCATCCTGGGGAAGAAGAGCAAAACTCCGTCTAAAAAAAAATTGTGCAGTTTGAAATTGTATTTCATGTTATGTTTTATCTCAATACAACATTTGCAGTTGTGAAAAAAAATTGCACATTCTCAACTCCTCGGGATGGAGCAGTAAAGCCCCTCAGTAAATCTTTTTTTTTTTTTTTTTTTGAGACCGAGTTTCGCTCTTGTCACCCAGGCTGGAGCGCAGGGGCGCGATCTCGGCTCACTGCAATCTCCGCCTCCTGGGTTCAAGGGATTCTCCTGCCTCACTCTCCCGAGTAGCTGGGATTATAGACGCCCACCACCACGCCCAGCAAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCATCATGTTGGGCAGGCTGGTCTCAAACTCCTGACCTCTGGTGATCCACCTGCCTTGGCCCCCCAAAGTGCAGGGATTACAGGCCTGAGCCACCGCGGCTCGTCAAGTGAATCTTGATTCCAGAAAGATCTGTTTTAAGTCTCTAGTCTGGAAAATGCAGTGGGAGTCTTTAGGTGGTTTGTGACTTGCAGTTAAGGAGACCGTGGCCTGAGCACTGGCCCCTTTTTCTTCTTTCATCTCTCTCCAGGAACTGAGCATGGAATGTGGCCTCAACAATCGCATCCGGATGATAGGGCAGATTT	-			P-0046719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	37	0	0	ENST00000219476.3:c.138+804_196del		p.X46_splice	ENST00000219476	NM_000548.3	46																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222074	2222074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	294	986	0	ENST00000398665.3:c.2906C>G	p.Ser969Cys	p.S969C	ENST00000398665	NM_032482.2	969	tCc/tGc																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309622	30309623	+	missense_variant	Missense_Mutation	DNP	CA	CA	TC			P-0046719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	200	575	2	ENST00000307677.4:c.399_400delinsGA	p.Asp133_Gly134delinsGluArg	p.D133_G134delinsER	ENST00000307677	NM_138578.1	133	gaTGgg/gaGAgg																																																																														
MAX	4149	MSKCC	GRCh37	14	65560493	65560493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	26	438	0	ENST00000358664.4:c.104G>A	p.Arg35His	p.R35H	ENST00000358664	NM_002382.4	35	cGt/cAt																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655425	45655425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	67	747	2	ENST00000407780.3:c.427G>A	p.Val143Ile	p.V143I	ENST00000407780	NM_001283052.1	143	Gtc/Atc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193091347	193091347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	35	327	0	ENST00000367435.3:c.17G>A	p.Ser6Asn	p.S6N	ENST00000367435	NM_024529.4	6	aGc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0046720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	54	597	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3799686	3799686	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0046721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	122	203	0	ENST00000262367.5:c.3780-2A>G		p.X1260_splice	ENST00000262367	NM_004380.2	1260																																																																															
SPOP	8405	MSKCC	GRCh37	17	47688752	47688770	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGGAACCTTTACCATGT	TCAGGAACCTTTACCATGT	-			P-0046721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	46	315	0	ENST00000347630.2:c.530_548del	p.Asn177SerfsTer8	p.N177Sfs*8	ENST00000347630	NM_001007230.1	177	aACATGGTAAAGGTTCCTGAg/ag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	60	271	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	120	551	2	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637121	176637122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	74	436	1	ENST00000439151.2:c.1727dup	p.Asn576LysfsTer8	p.N576Kfs*8	ENST00000439151	NM_022455.4	574	gga/ggAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970979	21970979	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	160	642	0	ENST00000304494.5:c.379del	p.Ala127HisfsTer19	p.A127Hfs*19	ENST00000304494	NM_000077.4	127	Gca/ca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970979	21970979	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	160	642	0	ENST00000304494.5:c.379del	p.Ala127HisfsTer19	p.A127Hfs*19	ENST00000304494	NM_000077.4	127	Gca/ca																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30253850	30253850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	93	525	0	ENST00000307677.4:c.604G>A	p.Glu202Lys	p.E202K	ENST00000307677	NM_138578.1	202	Gag/Aag																																																																														
RET	5979	MSKCC	GRCh37	10	43600402	43600402	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	93	468	1	ENST00000355710.3:c.628G>T	p.Glu210Ter	p.E210*	ENST00000355710	NM_020975.4	210	Gag/Tag																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30095705	30095705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	67	288	0	ENST00000331968.5:c.1783G>A	p.Gly595Arg	p.G595R	ENST00000331968	NM_002742.2	595	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	478	553	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1220428	1220428	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	722	706	0	ENST00000326873.7:c.521A>T	p.His174Leu	p.H174L	ENST00000326873	NM_000455.4	174	cAc/cTc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125503222	125503222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	97	200	0	ENST00000428830.2:c.589G>C	p.Val197Leu	p.V197L	ENST00000428830	NM_001114121.2	197	Gta/Cta																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136811	2136811	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	335	769	0	ENST00000219476.3:c.4928A>G	p.Asn1643Ser	p.N1643S	ENST00000219476	NM_000548.3	1643	aAc/aGc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226098	2226098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	372	868	1	ENST00000326181.6:c.1795G>T	p.Val599Leu	p.V599L	ENST00000326181	NM_032271.2	599	Gtg/Ttg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458259	12458259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	333	347	0	ENST00000287820.6:c.876C>A	p.Phe292Leu	p.F292L	ENST00000287820	NM_015869.4	292	ttC/ttA																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752343	57752344	+	missense_variant	Missense_Mutation	DNP	TT	TT	AG			P-0046725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	77	252	1	ENST00000274289.3:c.1229_1230delinsCT	p.Gln410Pro	p.Q410P	ENST00000274289	NM_006622.3	410	cAA/cCT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526718	106526718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	131	294	0	ENST00000359195.3:c.3011C>A	p.Pro1004Gln	p.P1004Q	ENST00000359195	NM_002649.2	1004	cCa/cAa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141568609	141568609	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	334	622	0	ENST00000220592.5:c.853A>C	p.Thr285Pro	p.T285P	ENST00000220592	NM_012154.3	285	Acc/Ccc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300935	137300935	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	306	736	0	ENST00000481739.1:c.580A>C	p.Lys194Gln	p.K194Q	ENST00000481739	NM_002957.4	194	Aag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	351	293	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0046727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	152	259	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	1172	842	2	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600005	10600005	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	527	834	5	ENST00000171111.5:c.1571del	p.Gly524AlafsTer8	p.G524Afs*8	ENST00000171111	NM_203500.1	524	gGc/gc																																																																														
AR	367	MSKCC	GRCh37	X	66765159	66765206	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	61	136	0	ENST00000374690.3:c.192_239del	p.Gln65_Gln80del	p.Q65_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																														
PGR	5241	MSKCC	GRCh37	11	100933195	100933195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	332	319	2	ENST00000325455.5:c.2195G>A	p.Trp732Ter	p.W732*	ENST00000325455	NM_001202474.3	732	tGg/tAg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980278	201980278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	154	534	1	ENST00000359651.3:c.14G>T	p.Cys5Phe	p.C5F	ENST00000359651		5	tGt/tTt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859675	57859676	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	308	465	1	ENST00000228682.2:c.729_730delinsAA	p.Ser243_Gln244delinsArgLys	p.S243_Q244delinsRK	ENST00000228682	NM_005269.2	243	agCCag/agAAag																																																																														
ERF	2077	MSKCC	GRCh37	19	42753078	42753078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	80	885	1	ENST00000222329.4:c.1186G>A	p.Val396Ile	p.V396I	ENST00000222329	NM_006494.2	396	Gta/Ata																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198281505	198281505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	388	439	0	ENST00000335508.6:c.626G>T	p.Gly209Val	p.G209V	ENST00000335508	NM_012433.2	209	gGt/gTt																																																																														
BARD1	580	MSKCC	GRCh37	2	215632293	215632293	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	31	409	0	ENST00000260947.4:c.1481A>G	p.Asn494Ser	p.N494S	ENST00000260947	NM_000465.2	494	aAt/aGt																																																																														
EP300	2033	MSKCC	GRCh37	22	41543900	41543900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	213	550	0	ENST00000263253.7:c.2191C>G	p.Pro731Ala	p.P731A	ENST00000263253	NM_001429.3	731	Cct/Gct																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390937	89390937	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	162	273	0	ENST00000336596.2:c.1003A>G	p.Asn335Asp	p.N335D	ENST00000336596	NM_005233.5	335	Aat/Gat																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138456719	138456719	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	78	312	0	ENST00000289153.2:c.631A>G	p.Ser211Gly	p.S211G	ENST00000289153	NM_006219.2	211	Agc/Ggc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146586	185146586	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	294	484	0	ENST00000265026.3:c.217A>T	p.Ser73Cys	p.S73C	ENST00000265026	NM_004721.4	73	Agt/Tgt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56152473	56152473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	179	201	0	ENST00000399503.3:c.529G>T	p.Asp177Tyr	p.D177Y	ENST00000399503	NM_005921.1	177	Gat/Tat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637174	176637174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	140	463	1	ENST00000439151.2:c.1774G>T	p.Gly592Cys	p.G592C	ENST00000439151	NM_022455.4	592	Ggc/Tgc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982134	93982134	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	68	325	0	ENST00000369303.4:c.1331C>G	p.Ser444Trp	p.S444W	ENST00000369303	NM_004440.3	444	tCg/tGg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984159	2984159	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	244	379	2	ENST00000396946.4:c.371A>G	p.His124Arg	p.H124R	ENST00000396946	NM_032415.4	124	cAc/cGc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222974	53222974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	520	398	0	ENST00000375401.3:c.4098G>T	p.Glu1366Asp	p.E1366D	ENST00000375401	NM_004187.3	1366	gaG/gaT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411872	63411872	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	577	488	1	ENST00000330258.3:c.1295del	p.Gly432AlafsTer17	p.G432Afs*17	ENST00000330258	NM_152424.3	432	gGc/gc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0046729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	72	278	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	198	527	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	53	232	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
ALK	238	MSKCC	GRCh37	2	29473981	29473981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	45	685	1	ENST00000389048.3:c.2194G>A	p.Asp732Asn	p.D732N	ENST00000389048	NM_004304.4	732	Gac/Aac																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626680	12626680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	38	439	0	ENST00000251849.4:c.1609G>A	p.Val537Ile	p.V537I	ENST00000251849	NM_002880.3	537	Gta/Ata																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028615	12028615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	66	236	0	ENST00000353533.5:c.818A>T	p.Glu273Val	p.E273V	ENST00000353533	NM_003010.3	273	gAa/gTa																																																																														
APC	324	MSKCC	GRCh37	5	112116559	112116559	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	24	249	0	ENST00000257430.4:c.604G>T	p.Glu202Ter	p.E202*	ENST00000257430	NM_000038.5	202	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	109	406	2				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	175	656	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983114	201983114	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	375	662	1	ENST00000359651.3:c.963del	p.Asn321LysfsTer4	p.N321Kfs*4	ENST00000359651		321	aaC/aa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390691	118390691	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	91	339	0	ENST00000534358.1:c.11343del	p.Phe3781LeufsTer26	p.F3781Lfs*26	ENST00000534358	NM_005933.3	3781	Ttt/tt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060821	38060822	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	417	999	0	ENST00000250448.2:c.1167dup	p.Gly390ArgfsTer25	p.G390Rfs*25	ENST00000250448	NM_004496.3	389	-/A																																																																														
FANCA	2175	MSKCC	GRCh37	16	89842150	89842150	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	83	559	0	ENST00000389301.3:c.1900G>A	p.Asp634Asn	p.D634N	ENST00000389301	NM_000135.2	634	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	254	863	1	ENST00000269305.4:c.392A>C	p.Asn131Thr	p.N131T	ENST00000269305	NM_001126112.2	131	aAc/aCc																																																																														
RHOA	387	MSKCC	GRCh37	3	49412947	49412947	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	217	678	0	ENST00000418115.1:c.76A>C	p.Ser26Arg	p.S26R	ENST00000418115	NM_001664.2	26	Agc/Cgc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908892	101908892	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	121	497	0	ENST00000374994.4:c.1255+1G>T		p.X419_splice	ENST00000374994	NM_004612.2	419																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44942708	44942708	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	118	412	0	ENST00000377967.4:c.3288G>A	p.Trp1096Ter	p.W1096*	ENST00000377967	NM_021140.2	1096	tgG/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	99	336	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993860	72993860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62639999		P-0046753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	60	607	0	ENST00000268489.5:c.185C>T	p.Ala62Val	p.A62V	ENST00000268489	NM_006885.3	62	gCg/gTg																																																																														
ATM	472	MSKCC	GRCh37	11	108203492	108203492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138941496		P-0046753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	43	149	0	ENST00000278616.4:c.7792C>T	p.Arg2598Ter	p.R2598*	ENST00000278616	NM_000051.3	2598	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108205774	108205774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	169	289	0	ENST00000278616.4:c.8089A>G	p.Asn2697Asp	p.N2697D	ENST00000278616	NM_000051.3	2697	Aat/Gat																																																																														
STK11	6794	MSKCC	GRCh37	19	1207089	1207090	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0046753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	394	876	0	ENST00000326873.7:c.178_179dup	p.Gly61ThrfsTer4	p.G61Tfs*4	ENST00000326873	NM_000455.4	59	-/TA																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326437	62326437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	341	1013	0	ENST00000508582.2:c.3434G>A	p.Arg1145His	p.R1145H	ENST00000508582		1145	cGt/cAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	144	309	1	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	168	381	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	28	332	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	246	719	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	45	303	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	34	98	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	39	217	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	161	569	0	ENST00000396946.4:c.1663dupC	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541541	187541541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	41	306	0	ENST00000441802.2:c.6199G>A	p.Val2067Met	p.V2067M	ENST00000441802	NM_005245.3	2067	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	110	355	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	271	844	14	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	217	810	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288710	15288710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	13	97	0	ENST00000263388.2:c.4029del	p.Cys1344ValfsTer76	p.C1344Vfs*76	ENST00000263388	NM_000435.2	1343	ccC/cc																																																																														
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	170	446	1	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	172	667	10	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	30	348	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211795	2211795	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	251	847	3	ENST00000398665.3:c.1516del	p.Gln506SerfsTer51	p.Q506Sfs*51	ENST00000398665	NM_032482.2	504	aCc/ac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163553	32163554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs777647776		P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	63	736	1	ENST00000375023.3:c.5672dup	p.Gly1892ArgfsTer24	p.G1892Rfs*24	ENST00000375023	NM_004557.3	1891	ggc/ggGc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	97	891	1	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	103	903	4	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
CCND1	595	MSKCC	GRCh37	11	69466039	69466041	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	229	955	0	ENST00000227507.2:c.878_880del	p.Val293del	p.V293del	ENST00000227507	NM_053056.2	293	GTG/-																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	32	424	3	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088681	27088682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	209	706	0	ENST00000324856.7:c.2296dup	p.Gln766ProfsTer51	p.Q766Pfs*51	ENST00000324856	NM_006015.4	764	tcc/tCcc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	181	1016	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MITF	4286	MSKCC	GRCh37	3	70005612	70005614	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	82	242	0	ENST00000352241.4:c.952_954del	p.Arg318del	p.R318del	ENST00000352241	NM_198159.2	315	cGAAga/cga																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112884083	112884083	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs79203122		P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	171	442	1	ENST00000351677.2:c.18G>T	p.Trp6Cys	p.W6C	ENST00000351677	NM_002834.3	6	tgG/tgT																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	47	361	0	ENST00000282397.4:c.166delG	p.Glu56LysfsTer12	p.E56Kfs*12	ENST00000282397	NM_002019.4	56	Gaa/aa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118943	70118943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	57	844	0	ENST00000245479.2:c.515A>G	p.Tyr172Cys	p.Y172C	ENST00000245479	NM_000346.3	172	tAc/tGc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30326004	30326005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769517721		P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	67	197	0	ENST00000322652.5:c.2208dup	p.Gln737ThrfsTer20	p.Q737Tfs*20	ENST00000322652	NM_015355.2	734	-/A																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942195	71942195	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	92	749	0	ENST00000298229.2:c.1463delG	p.Gly488AlafsTer43	p.G488Afs*43	ENST00000298229	NM_001567.3	487	Ggg/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088709	27088709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	222	664	0	ENST00000324856.7:c.2318C>T	p.Pro773Leu	p.P773L	ENST00000324856	NM_006015.4	773	cCg/cTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821875	72821875	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	166	445	1	ENST00000268489.5:c.10300del	p.Leu3434SerfsTer51	p.L3434Sfs*51	ENST00000268489	NM_006885.3	3434	Ctc/tc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528284	157528284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	91	597	0	ENST00000346085.5:c.6013del	p.Val2005TrpfsTer16	p.V2005Wfs*16	ENST00000346085	NM_020732.3	2003	aaG/aa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518740	176518740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	275	873	0	ENST00000292408.4:c.658G>A	p.Gly220Ser	p.G220S	ENST00000292408	NM_213647.1	220	Ggc/Agc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180049806	180049806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	228	825	2	ENST00000261937.6:c.1582G>A	p.Val528Met	p.V528M	ENST00000261937	NM_182925.4	528	Gtg/Atg																																																																														
STK40	83931	MSKCC	GRCh37	1	36820901	36820901	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	67	647	0	ENST00000373129.3:c.476T>C	p.Leu159Pro	p.L159P	ENST00000373129	NM_032017.1	159	cTg/cCg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843662	156843662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	260	967	0	ENST00000524377.1:c.1088C>T	p.Ala363Val	p.A363V	ENST00000524377	NM_002529.3	363	gCt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711908	89711913	+	inframe_deletion	In_Frame_Del	DEL	TATTAT	TATTAT	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	92	423	0	ENST00000371953.3:c.529_534del	p.Tyr177_Tyr178del	p.Y177_Y178del	ENST00000371953	NM_000314.4	176	TATTAT/-																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325056	123325056	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	131	589	0	ENST00000358487.5:c.272A>G	p.Tyr91Cys	p.Y91C	ENST00000358487	NM_000141.4	91	tAc/tGc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129217	64129217	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	221	830	0	ENST00000334205.4:c.755G>A	p.Arg252Gln	p.R252Q	ENST00000334205	NM_003942.2	252	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344797	118344797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	39	282	0	ENST00000534358.1:c.2923G>A	p.Asp975Asn	p.D975N	ENST00000534358	NM_005933.3	975	Gac/Aac																																																																														
POLE	5426	MSKCC	GRCh37	12	133256158	133256158	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	179	520	1	ENST00000320574.5:c.503A>G	p.Lys168Arg	p.K168R	ENST00000320574	NM_006231.2	168	aAg/aGg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222314	2222314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	251	920	0	ENST00000326181.6:c.603del	p.Ile202SerfsTer44	p.I202Sfs*44	ENST00000326181	NM_032271.2	200	Ccc/cc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660457	67660457	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	47	298	0	ENST00000264010.4:c.1358-1G>A		p.X453_splice	ENST00000264010	NM_006565.3	453																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72832376	72832376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	54	418	2	ENST00000268489.5:c.4205G>A	p.Arg1402His	p.R1402H	ENST00000268489	NM_006885.3	1402	cGc/cAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29676183	29676183	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	33	238	0	ENST00000358273.4:c.7238del	p.Leu2413TyrfsTer5	p.L2413Yfs*5	ENST00000358273	NM_001042492.2	2412	aTt/at																																																																														
NF1	4763	MSKCC	GRCh37	17	29676212	29676212	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	51	269	0	ENST00000358273.4:c.7266del	p.Lys2422AsnfsTer10	p.K2422Nfs*10	ENST00000358273	NM_001042492.2	2422	Aaa/aa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244251	5244251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	99	944	0	ENST00000357368.4:c.1231G>T	p.Gly411Trp	p.G411W	ENST00000357368	NM_002850.3	411	Ggg/Tgg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948775	17948775	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	258	783	0	ENST00000458235.1:c.1667A>C	p.Lys556Thr	p.K556T	ENST00000458235	NM_000215.3	556	aAg/aCg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229458	36229458	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	88	438	0	ENST00000222270.7:c.8148A>C	p.Ter2716CysextTer47	p.*2716Cext*47	ENST00000222270	NM_014727.1	2716	tgA/tgC																																																																														
AXL	558	MSKCC	GRCh37	19	41765609	41765609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	166	703	0	ENST00000301178.4:c.2485G>T	p.Gly829Cys	p.G829C	ENST00000301178	NM_021913.4	829	Ggt/Tgt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919891	50919891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	251	1055	0	ENST00000440232.2:c.2978C>T	p.Thr993Met	p.T993M	ENST00000440232	NM_002691.3	993	aCg/aTg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30686277	30686277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	40	326	0	ENST00000359013.4:c.208G>A	p.Val70Ile	p.V70I	ENST00000359013	NM_001024847.2	70	Gtc/Atc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952137	178952137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	27	215	0	ENST00000263967.3:c.3192G>T	p.Gln1064His	p.Q1064H	ENST00000263967	NM_006218.2	1064	caG/caT																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158519	26158519	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	73	479	0	ENST00000289316.2:c.122A>T	p.Tyr41Phe	p.Y41F	ENST00000289316	NM_138720.2	41	tAt/tTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166715	32166715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	155	919	0	ENST00000375023.3:c.4523G>A	p.Ser1508Asn	p.S1508N	ENST00000375023	NM_004557.3	1508	aGc/aAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268082	55268082	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	233	696	0	ENST00000275493.2:c.2926del	p.Gln976SerfsTer26	p.Q976Sfs*26	ENST00000275493	NM_005228.3	974	gaC/ga																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739027	145739027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	182	747	0	ENST00000428558.2:c.2128C>T	p.Arg710Cys	p.R710C	ENST00000428558	NM_004260.3	710	Cgc/Tgc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223698	53223698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	338	952	0	ENST00000375401.3:c.3661A>G	p.Ser1221Gly	p.S1221G	ENST00000375401	NM_004187.3	1221	Agc/Ggc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409939	63409940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0046754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	148	566	0	ENST00000330258.3:c.3226_3227dup	p.Pro1077SerfsTer54	p.P1077Sfs*54	ENST00000330258	NM_152424.3	1076	aag/aaAAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	395	384	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211757	2211757	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	175	827	1	ENST00000398665.3:c.1473C>G	p.Phe491Leu	p.F491L	ENST00000398665	NM_032482.2	491	ttC/ttG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	436	1050	0	ENST00000269305.4:c.461delG	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	154	gGc/gc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602872	10602872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	613	1020	0	ENST00000171111.5:c.706G>T	p.Asp236Tyr	p.D236Y	ENST00000171111	NM_203500.1	236	Gac/Tac																																																																														
MED12	9968	MSKCC	GRCh37	X	70340937	70340937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	258	654	0	ENST00000374080.3:c.670C>A	p.His224Asn	p.H224N	ENST00000374080		224	Cat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521660	89521660	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	221	427	0	ENST00000336596.2:c.2737T>A	p.Phe913Ile	p.F913I	ENST00000336596	NM_005233.5	913	Ttc/Atc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30099962	30099962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	92	421	0	ENST00000331968.5:c.1658G>T	p.Gly553Val	p.G553V	ENST00000331968	NM_002742.2	553	gGa/gTa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222372	2222372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	271	902	0	ENST00000326181.6:c.656G>C	p.Arg219Pro	p.R219P	ENST00000326181	NM_032271.2	219	cGg/cCg																																																																														
NF1	4763	MSKCC	GRCh37	17	29684320	29684320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	29	410	1	ENST00000358273.4:c.7903G>T	p.Asp2635Tyr	p.D2635Y	ENST00000358273	NM_001042492.2	2635	Gat/Tat																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210818	2210818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	104	525	0	ENST00000398665.3:c.1315C>G	p.Gln439Glu	p.Q439E	ENST00000398665	NM_032482.2	439	Cag/Gag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462411	89462411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	190	469	0	ENST00000336596.2:c.1883G>T	p.Gly628Val	p.G628V	ENST00000336596	NM_005233.5	628	gGa/gTa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117866618	117866618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	82	353	0	ENST00000297338.2:c.1027G>A	p.Asp343Asn	p.D343N	ENST00000297338	NM_006265.2	343	Gat/Aat																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737642	145737642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	586	1035	1	ENST00000428558.2:c.3121G>A	p.Gly1041Arg	p.G1041R	ENST00000428558	NM_004260.3	1041	Ggg/Agg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376063	8376063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	19	223	0	ENST00000356435.5:c.4534A>G	p.Arg1512Gly	p.R1512G	ENST00000356435		1512	Aga/Gga																																																																														
XIAP	331	MSKCC	GRCh37	X	123040972	123040972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	25	178	0	ENST00000355640.3:c.1435G>A	p.Asp479Asn	p.D479N	ENST00000355640		479	Gac/Aac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956676	93956676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	100	211	0	ENST00000369303.4:c.2560C>T	p.Arg854Cys	p.R854C	ENST00000369303	NM_004440.3	854	Cgt/Tgt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562649	21562649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	295	414	0	ENST00000382592.4:c.1270C>T	p.Pro424Ser	p.P424S	ENST00000382592	NM_014572.2	424	Ccc/Tcc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658857	3658857	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	239	364	0	ENST00000294008.3:c.109A>C	p.Ser37Arg	p.S37R	ENST00000294008	NM_032444.2	37	Agc/Cgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832052	72832052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	227	357	0	ENST00000268489.5:c.4529C>T	p.Ser1510Phe	p.S1510F	ENST00000268489	NM_006885.3	1510	tCt/tTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258991	153258992	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0046756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	50	155	1	ENST00000281708.4:c.823_824del	p.Gln275ValfsTer11	p.Q275Vfs*11	ENST00000281708	NM_033632.3	275	CAg/g																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0046757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	65	314	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0046757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	89	290	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42052713	42052716	+	frameshift_variant	Frame_Shift_Del	DEL	CTCA	CTCA	-			P-0046757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	118	344	0	ENST00000219905.7:c.7384_7387del	p.Leu2462PhefsTer12	p.L2462Ffs*12	ENST00000219905	NM_001164273.1	2462	CTCAtt/tt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	186	423	0				ENST00000310581	NM_198253.2																																																																																
RHOA	387	MSKCC	GRCh37	3	49400019	49400019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	194	519	0	ENST00000418115.1:c.318C>G	p.Phe106Leu	p.F106L	ENST00000418115	NM_001664.2	106	ttC/ttG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	417	537	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741363	17741363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	517	894	0	ENST00000250003.3:c.34G>C	p.Asp12His	p.D12H	ENST00000250003	NM_002478.4	12	Gac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378607	25378607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	175	374	0	ENST00000256078.4:c.391C>A	p.Gln131Lys	p.Q131K	ENST00000256078	NM_033360.2	131	Cag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416137	49416137	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0046758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	212	312	0	ENST00000301067.7:c.16339-1G>C		p.X5447_splice	ENST00000301067	NM_003482.3	5447																																																																															
MGA	23269	MSKCC	GRCh37	15	42050023	42050023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	55	239	0	ENST00000219905.7:c.7177G>A	p.Glu2393Lys	p.E2393K	ENST00000219905	NM_001164273.1	2393	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020368	69020368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	81	380	0	ENST00000288368.4:c.2740G>T	p.Ala914Ser	p.A914S	ENST00000288368	NM_024870.2	914	Gcc/Tcc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413014	63413014	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	89	440	0	ENST00000330258.3:c.153G>C	p.Arg51Ser	p.R51S	ENST00000330258	NM_152424.3	51	agG/agC																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197821	123197822	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0046758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	180	166	0	ENST00000218089.9:c.1947_1948del	p.Arg649SerfsTer11	p.R649Sfs*11	ENST00000218089	NM_001042749.1	649	AGa/a																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	77	283	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	345	673	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738411	145738416	+	inframe_deletion	In_Frame_Del	DEL	GGTGCA	GGTGCA	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	144	870	0	ENST00000428558.2:c.2569_2574delTGCACC	p.Cys857_Thr858del	p.C857_T858del	ENST00000428558	NM_004260.3	857	TGCACC/-																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	60	927	6	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030323	180030323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	209	841	3	ENST00000261937.6:c.3961C>T	p.Arg1321Trp	p.R1321W	ENST00000261937	NM_182925.4	1321	Cgg/Tgg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	136	612	8	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593507	48593507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	102	207	1	ENST00000342988.3:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000342988	NM_005359.5	420	Cgt/Tgt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176330	24176330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	135	740	0	ENST00000263121.7:c.1121G>A	p.Arg374Gln	p.R374Q	ENST00000263121	NM_003073.3	374	cGg/cAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781901	3781903	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs751071525		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	177	533	0	ENST00000262367.5:c.4764_4766del	p.Lys1588del	p.K1588del	ENST00000262367	NM_004380.2	1588	aaGAAc/aac																																																																														
PGR	5241	MSKCC	GRCh37	11	100998169	100998169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	62	413	1	ENST00000325455.5:c.1633C>A	p.Leu545Met	p.L545M	ENST00000325455	NM_001202474.3	545	Ctg/Atg																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870205	155870205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	126	422	0	ENST00000368323.3:c.634C>T	p.Arg212Trp	p.R212W	ENST00000368323	NM_006912.5	212	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713386	40713386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	173	652	1	ENST00000373198.4:c.4129C>T	p.Arg1377Ter	p.R1377*	ENST00000373198	NM_133170.3	1377	Cga/Tga																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936307	49936307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	158	476	0	ENST00000296474.3:c.1541G>T	p.Gly514Val	p.G514V	ENST00000296474	NM_002447.2	514	gGg/gTg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	153	719	0	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	111	440	7	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289272	33289272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	132	409	0	ENST00000374542.5:c.280C>T	p.Arg94Cys	p.R94C	ENST00000374542	NM_001141970.1	94	Cgt/Tgt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	231	473	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016675	12016675	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	74	198	1	ENST00000353533.5:c.811G>A	p.Ala271Thr	p.A271T	ENST00000353533	NM_003010.3	271	Gca/Aca																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	191	837	6	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29106023	29106023	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	75	228	1	ENST00000328354.6:c.817G>T	p.Glu273Ter	p.E273*	ENST00000328354	NM_007194.3	273	Gaa/Taa																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128246746	128246746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	116	460	0	ENST00000265960.3:c.1183C>T	p.Arg395Ter	p.R395*	ENST00000265960	NM_001006617.1	395	Cga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43730536	43730536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	131	372	0	ENST00000382044.4:c.3177del	p.Thr1060ProfsTer36	p.T1060Pfs*36	ENST00000382044	NM_001141980.1	1059	ccC/cc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858929	57858929	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	222	581	1	ENST00000228682.2:c.429del	p.Ser146ArgfsTer19	p.S146Rfs*19	ENST00000228682	NM_005269.2	142	cAa/ca																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138097	2138097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	239	829	0	ENST00000219476.3:c.5117G>A	p.Arg1706His	p.R1706H	ENST00000219476	NM_000548.3	1706	cGc/cAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272238	15272238	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	316	757	1	ENST00000263388.2:c.6201del	p.Lys2069ArgfsTer16	p.K2069Rfs*16	ENST00000263388	NM_000435.2	2067	ccC/cc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158637067	158637068	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	130	494	3	ENST00000263640.3:c.111_112dupTG	p.Glu38ValfsTer21	p.E38Vfs*21	ENST00000263640	NM_001105.4	38	gaa/gTGaa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461564	138461564	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202220571		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	93	366	0	ENST00000289153.2:c.457C>T	p.Arg153Cys	p.R153C	ENST00000289153	NM_006219.2	153	Cgc/Tgc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182662919	182662919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	43	351	0	ENST00000292782.4:c.743G>A	p.Arg248His	p.R248H	ENST00000292782	NM_020640.2	248	cGc/cAc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206653405	206653405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782442134		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	227	738	0	ENST00000367120.3:c.1289G>A	p.Arg430Gln	p.R430Q	ENST00000367120	NM_014002.3	430	cGg/cAg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085894	16085894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	22	373	0	ENST00000281043.3:c.1070G>A	p.Arg357His	p.R357H	ENST00000281043	NM_005378.4	357	cGt/cAt																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19258520	19258520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	376	798	1	ENST00000162023.5:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000162023		127	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108186598	108186598	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	63	234	0	ENST00000278616.4:c.6055T>C	p.Tyr2019His	p.Y2019H	ENST00000278616	NM_000051.3	2019	Tat/Cat																																																																														
POLE	5426	MSKCC	GRCh37	12	133225519	133225519	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143229302		P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	155	558	2	ENST00000320574.5:c.4145G>A	p.Arg1382His	p.R1382H	ENST00000320574	NM_006231.2	1382	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176618907	176618907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	91	290	0	ENST00000439151.2:c.950C>T	p.Thr317Met	p.T317M	ENST00000439151	NM_022455.4	317	aCg/aTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639236	3639236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	225	747	2	ENST00000294008.3:c.4403G>A	p.Arg1468His	p.R1468H	ENST00000294008	NM_032444.2	1468	cGc/cAc																																																																														
PARK2	0	MSKCC	GRCh37	6	161969982	161969983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	150	501	1	ENST00000366898.1:c.986dup	p.Val330ArgfsTer17	p.V330Rfs*17	ENST00000366898	NM_004562.2	329	ggc/ggGc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70982082	70982082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	157	610	0	ENST00000276594.2:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000276594	NM_024504.3	5	cGg/cAg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357101	89357101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	231	664	1	ENST00000301030.4:c.533G>A	p.Arg178His	p.R178H	ENST00000301030	NM_001256183.1	178	cGc/cAc																																																																														
CDC42	998	MSKCC	GRCh37	1	22417991	22417991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	17	34	0	ENST00000344548.3:c.557G>A	p.Arg186His	p.R186H	ENST00000344548	NM_001039802.1	186	cGc/cAc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46736427	46736427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	126	411	1	ENST00000371975.4:c.1139G>T	p.Arg380Leu	p.R380L	ENST00000371975	NM_003579.3	380	cGg/cTg																																																																														
ATM	472	MSKCC	GRCh37	11	108098420	108098420	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	61	217	0	ENST00000278616.4:c.71del	p.Lys24ArgfsTer10	p.K24Rfs*10	ENST00000278616	NM_000051.3	23	cgA/cg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499733	18499733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	74	263	0	ENST00000266497.5:c.1588T>C	p.Tyr530His	p.Y530H	ENST00000266497		530	Tat/Cat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443653	49443653	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	179	599	0	ENST00000301067.7:c.3718A>G	p.Met1240Val	p.M1240V	ENST00000301067	NM_003482.3	1240	Atg/Gtg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28963972	28963972	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	169	269	0	ENST00000282397.4:c.1930G>C	p.Gly644Arg	p.G644R	ENST00000282397	NM_002019.4	644	Ggg/Cgg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396682	396682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	154	584	0	ENST00000262320.3:c.344T>C	p.Leu115Pro	p.L115P	ENST00000262320	NM_003502.3	115	cTg/cCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821665	72821665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	58	181	0	ENST00000268489.5:c.10510G>A	p.Val3504Ile	p.V3504I	ENST00000268489	NM_006885.3	3504	Gtc/Atc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214128	36214128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	258	866	0	ENST00000222270.7:c.2954T>C	p.Leu985Pro	p.L985P	ENST00000222270	NM_014727.1	985	cTa/cCa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50916686	50916686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	62	449	0	ENST00000440232.2:c.2158G>A	p.Val720Ile	p.V720I	ENST00000440232	NM_002691.3	720	Gtc/Atc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435880	149435880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	134	570	0	ENST00000286301.3:c.2344C>T	p.Arg782Cys	p.R782C	ENST00000286301	NM_005211.3	782	Cgt/Tgt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509335	149509335	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	113	470	0	ENST00000261799.4:c.1564A>G	p.Ile522Val	p.I522V	ENST00000261799	NM_002609.3	522	Atc/Gtc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515127	149515127	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	154	458	0	ENST00000261799.4:c.355T>G	p.Phe119Val	p.F119V	ENST00000261799	NM_002609.3	119	Ttt/Gtt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286773	33286773	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	136	462	1	ENST00000374542.5:c.2163+1G>A		p.X721_splice	ENST00000374542	NM_001141970.1	721																																																																															
ROS1	6098	MSKCC	GRCh37	6	117647446	117647448	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	69	368	0	ENST00000368508.3:c.5496_5498del	p.Ala1833del	p.A1833del	ENST00000368508	NM_002944.2	1832	gcTGCa/gca																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163730	152163730	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	59	192	0	ENST00000206249.3:c.453-2A>G		p.X151_splice	ENST00000206249	NM_000125.3	151																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300133	137300133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	386	743	0	ENST00000481739.1:c.418G>A	p.Asp140Asn	p.D140N	ENST00000481739	NM_002957.4	140	Gac/Aac																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370236	40370236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	98	726	1	ENST00000293328.3:c.1102C>G	p.Gln368Glu	p.Q368E	ENST00000293328	NM_012448.3	368	Cag/Gag																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370235	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	101	681	1	ENST00000293328.3:c.1103del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000293328	NM_012448.3	368	cAg/cg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910742	29910743	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0046759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	173	797	0	ENST00000376809.5:c.282_283del	p.Gln94HisfsTer4	p.Q94Hfs*4	ENST00000376809	NM_002116.7	94	caGTca/caca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	326	762	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39241979	39241979	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	33	209	0	ENST00000402219.2:c.1867T>G	p.Phe623Val	p.F623V	ENST00000402219	NM_005633.3	623	Ttt/Gtt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097701	8097701	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	40	501	1	ENST00000346208.3:c.83A>T	p.His28Leu	p.H28L	ENST00000346208		28	cAc/cTc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313380	30313380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	76	560	0	ENST00000262643.3:c.980G>C	p.Cys327Ser	p.C327S	ENST00000262643	NM_001238.2	327	tGt/tCt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543847	212543847	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	84	346	0	ENST00000342788.4:c.1552G>C	p.Asp518His	p.D518H	ENST00000342788	NM_005235.2	518	Gac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947841	178947841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	119	259	0	ENST00000263967.3:c.2716G>C	p.Val906Leu	p.V906L	ENST00000263967	NM_006218.2	906	Gta/Cta																																																																														
APC	324	MSKCC	GRCh37	5	112173659	112173659	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	174	223	1	ENST00000257430.4:c.2368A>T	p.Arg790Ter	p.R790*	ENST00000257430	NM_000038.5	790	Aga/Tga																																																																														
NBN	4683	MSKCC	GRCh37	8	90965852	90965852	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs143948240		P-0046760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	49	237	0	ENST00000265433.3:c.1465C>G	p.Leu489Val	p.L489V	ENST00000265433	NM_002485.4	489	Ctt/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0046774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	388	659	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	299	367	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937602	76937603	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	21	192	0	ENST00000373344.5:c.3145dupA	p.Ile1049AsnfsTer4	p.I1049Nfs*4	ENST00000373344	NM_000489.3	1049	ata/aAta																																																																														
EP300	2033	MSKCC	GRCh37	22	41574815	41574815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	178	467	1	ENST00000263253.7:c.7100C>T	p.Pro2367Leu	p.P2367L	ENST00000263253	NM_001429.3	2367	cCg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980850	40980850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	171	467	1	ENST00000373198.4:c.1636C>T	p.Arg546Trp	p.R546W	ENST00000373198	NM_133170.3	546	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	250	474	0	ENST00000269305.4:c.724T>C	p.Cys242Arg	p.C242R	ENST00000269305	NM_001126112.2	242	Tgc/Cgc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41199660	41199660	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	134	462	1	ENST00000357654.3:c.5467G>A	p.Ala1823Thr	p.A1823T	ENST00000357654	NM_007294.3	1823	Gca/Aca																																																																														
PGR	5241	MSKCC	GRCh37	11	100909896	100909896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	44	214	0	ENST00000325455.5:c.2753C>A	p.Pro918His	p.P918H	ENST00000325455	NM_001202474.3	918	cCc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027518	48027518	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	29	220	0	ENST00000234420.5:c.2396T>C	p.Met799Thr	p.M799T	ENST00000234420	NM_000179.2	799	aTg/aCg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715595	30715634	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGGTGGGAACTGCAAGATACATGGCTCCAGAAGTCCTAGA	AGGTGGGAACTGCAAGATACATGGCTCCAGAAGTCCTAGA	-			P-0046777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	29	110	0	ENST00000359013.4:c.1330-1_1368del		p.X444_splice	ENST00000359013	NM_001024847.2	444																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526471	31526471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	192	632	0	ENST00000344624.3:c.569G>A	p.Ser190Asn	p.S190N	ENST00000344624		190	aGt/aAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	264	535	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0046778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	29	182	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119886	70119887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	339	516	0	ENST00000245479.2:c.889dup	p.Tyr297LeufsTer281	p.Y297Lfs*281	ENST00000245479	NM_000346.3	296	-/T																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395108	139395108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	9	673	3	ENST00000277541.6:c.5830G>A	p.Ala1944Thr	p.A1944T	ENST00000277541	NM_017617.3	1944	Gcc/Acc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	35	297	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145743003	145743003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	499	183	0	ENST00000428558.2:c.101C>T	p.Ala34Val	p.A34V	ENST00000428558	NM_004260.3	34	gCg/gTg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748035	72748035	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	615	504	0	ENST00000357731.5:c.143T>A	p.Met48Lys	p.M48K	ENST00000357731	NM_173808.2	48	aTg/aAg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647455	3647456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1254	414	673	1	ENST00000294008.3:c.1607dup	p.Thr537AspfsTer39	p.T537Dfs*39	ENST00000294008	NM_032444.2	536	ctg/ctTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578405	7578427	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCTCACAACCTCCGTCATGT	GCGCCTCACAACCTCCGTCATGT	-			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	782	629	0	ENST00000269305.4:c.503_525del	p.His168LeufsTer5	p.H168Lfs*5	ENST00000269305	NM_001126112.2	168	cACATGACGGAGGTTGTGAGGCGC/c																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300122	15300122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1227	883	654	1	ENST00000263388.2:c.1154G>T	p.Gly385Val	p.G385V	ENST00000263388	NM_000435.2	385	gGt/gTt																																																																														
MITF	4286	MSKCC	GRCh37	3	69928292	69928292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	379	348	1	ENST00000352241.4:c.112G>T	p.Ala38Ser	p.A38S	ENST00000352241	NM_198159.2	38	Gcc/Tcc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593491	55593491	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	73	229	0	ENST00000288135.5:c.1647+1G>T		p.X549_splice	ENST00000288135	NM_000222.2	549																																																																															
WHSC1L1	0	MSKCC	GRCh37	8	38186998	38187000	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0046780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	332	469	0	ENST00000317025.8:c.1477_1479del	p.Gln493del	p.Q493del	ENST00000317025	NM_023034.1	493	CAG/-																																																																														
KIT	3815	MSKCC	GRCh37	4	55599338	55599338	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	118	302	0	ENST00000288135.5:c.2464A>T	p.Asn822Tyr	p.N822Y	ENST00000288135	NM_000222.2	822	Aat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528596	8528596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	49	247	0	ENST00000356435.5:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000356435		179	cGa/cAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55599266	55599266	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	109	273	0	ENST00000288135.5:c.2392A>G	p.Ile798Val	p.I798V	ENST00000288135	NM_000222.2	798	Atc/Gtc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913906	32913906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	123	308	0	ENST00000380152.3:c.5414A>G	p.Asn1805Ser	p.N1805S	ENST00000380152		1805	aAt/aGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29579964	29579964	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	129	243	0	ENST00000358273.4:c.4119C>A	p.Cys1373Ter	p.C1373*	ENST00000358273	NM_001042492.2	1373	tgC/tgA																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533093	63533094	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	84	592	0	ENST00000307078.5:c.1800dup	p.Gly601ArgfsTer27	p.G601Rfs*27	ENST00000307078	NM_004655.3	600	-/C																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267385	198267385	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	121	330	0	ENST00000335508.6:c.1972T>C	p.Trp658Arg	p.W658R	ENST00000335508	NM_012433.2	658	Tgg/Cgg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729355	41729355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	64	456	1	ENST00000242208.4:c.1174G>T	p.Val392Leu	p.V392L	ENST00000242208	NM_002192.2	392	Gtg/Ttg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	125	245	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	233	535	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	165	517	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	62	562	2	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692918	89692918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	72	368	0	ENST00000371953.3:c.402G>T	p.Met134Ile	p.M134I	ENST00000371953	NM_000314.4	134	atG/atT																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798741	135798741	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	13	144	0	ENST00000298552.3:c.502A>T	p.Lys168Ter	p.K168*	ENST00000298552	NM_001162426.1	168	Aaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108159726	108159726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	56	350	0	ENST00000278616.4:c.4132C>G	p.Pro1378Ala	p.P1378A	ENST00000278616	NM_000051.3	1378	Cca/Gca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	35	411	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	13	92	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940877	49940877	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	170	719	0	ENST00000296474.3:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000296474	NM_002447.2	56	Cag/Tag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979286	93979286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	65	306	0	ENST00000369303.4:c.1542G>T	p.Gln514His	p.Q514H	ENST00000369303	NM_004440.3	514	caG/caT																																																																														
STK11	6794	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	230	733	0	ENST00000326873.7:c.709G>A	p.Asp237Asn	p.D237N	ENST00000326873	NM_000455.4	237	Gac/Aac																																																																														
RFWD2	0	MSKCC	GRCh37	1	176104217	176104217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	141	175	1	ENST00000367669.3:c.897G>T	p.Met299Ile	p.M299I	ENST00000367669	NM_022457.5	299	atG/atT																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50479315	50479315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	98	378	0	ENST00000394963.4:c.163G>T	p.Gly55Ter	p.G55*	ENST00000394963	NM_003076.4	55	Gga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45007734	45007734	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	20	255	0	ENST00000558401.1:c.181A>T	p.Lys61Ter	p.K61*	ENST00000558401	NM_004048.2	61	Aag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600004	10600005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	176	693	0	ENST00000171111.5:c.1571dup	p.Tyr525LeufsTer2	p.Y525Lfs*2	ENST00000171111	NM_203500.1	524	ggc/ggGc																																																																														
CIC	23152	MSKCC	GRCh37	19	42797354	42797354	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	206	790	0	ENST00000575354.2:c.3716G>A	p.Trp1239Ter	p.W1239*	ENST00000575354	NM_015125.3	1239	tGg/tAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912383	50912383	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	58	649	0	ENST00000440232.2:c.1897A>C	p.Thr633Pro	p.T633P	ENST00000440232	NM_002691.3	633	Act/Cct																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275204	41275205	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	98	286	1	ENST00000349496.5:c.1370_1371delinsTT	p.Arg457Ile	p.R457I	ENST00000349496	NM_001904.3	457	aGG/aTT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933410	39933410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	159	589	1	ENST00000378444.4:c.1189C>A	p.Pro397Thr	p.P397T	ENST00000378444	NM_001123385.1	397	Ccg/Acg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220533	123220533	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	130	365	0	ENST00000218089.9:c.3190A>T	p.Ser1064Cys	p.S1064C	ENST00000218089	NM_001042749.1	1064	Agc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	356	237	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	507	704	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574014	7574014	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	34	581	0	ENST00000269305.4:c.1013del	p.Phe338SerfsTer7	p.F338Sfs*7	ENST00000269305	NM_001126112.2	338	tTc/tc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249472	153249472	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	28	333	0	ENST00000281708.4:c.1306A>G	p.Ser436Gly	p.S436G	ENST00000281708	NM_033632.3	436	Agt/Ggt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0046791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	106	232	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	47	264	1	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	47	264	1	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578436	7578439	+	frameshift_variant	Frame_Shift_Del	DEL	TGCT	TGCT	-			P-0046791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	79	586	0	ENST00000269305.4:c.491_494delAGCA	p.Lys164SerfsTer5	p.K164Sfs*5	ENST00000269305	NM_001126112.2	164	aAGCAg/ag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48586236	48586236	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0046791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	38	195	0	ENST00000342988.3:c.905G>A	p.Trp302Ter	p.W302*	ENST00000342988	NM_005359.5	302	tGg/tAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89176402	89176402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	61	129	0	ENST00000336596.2:c.132G>T	p.Trp44Cys	p.W44C	ENST00000336596	NM_005233.5	44	tgG/tgT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	56	236	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	29	219	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	14	144	1	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29654820	29654820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	73	154	0	ENST00000358273.4:c.5572G>A	p.Ala1858Thr	p.A1858T	ENST00000358273	NM_001042492.2	1858	Gca/Aca																																																																														
TBX3	6926	MSKCC	GRCh37	12	115111972	115111972	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	172	404	0	ENST00000257566.3:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000257566	NM_016569.3	590	Cag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	109	438	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																														
APC	324	MSKCC	GRCh37	5	112174357	112174358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	41	152	0	ENST00000257430.4:c.3067dup	p.Thr1023AsnfsTer6	p.T1023Nfs*6	ENST00000257430	NM_000038.5	1022	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	387	593	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88676898	88676898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	155	319	0	ENST00000372037.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000372037	NM_004329.2	228	cGa/cAa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196093	138196093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	89	154	0	ENST00000237289.4:c.407G>A	p.Arg136His	p.R136H	ENST00000237289	NM_001270507.1	136	cGc/cAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	464398	464398	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	95	241	0	ENST00000399788.2:c.796C>T	p.Arg266Ter	p.R266*	ENST00000399788	NM_001042603.1	266	Cga/Tga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965191	81965191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	183	353	0	ENST00000359376.3:c.2671G>C	p.Asp891His	p.D891H	ENST00000359376	NM_002661.3	891	Gac/Cac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954976	2954976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	235	462	0	ENST00000396946.4:c.2734C>T	p.Arg912Trp	p.R912W	ENST00000396946	NM_032415.4	912	Cgg/Tgg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121016	29121016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	29	288	0	ENST00000328354.6:c.541C>T	p.Arg181Cys	p.R181C	ENST00000328354	NM_007194.3	181	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821566	72821581	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTCTCGCACGCCAG	CGCTCTCGCACGCCAG	TGCGA			P-0046797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	75	133	0	ENST00000268489.5:c.10594_10609delinsTCGCA	p.Leu3532SerfsTer35	p.L3532Sfs*35	ENST00000268489	NM_006885.3	3532	CTGGCGTGCGAGAGCGcg/TCGCAcg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	129	391	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9560902	9560902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	145	391	0	ENST00000353224.5:c.880G>A	p.Glu294Lys	p.E294K	ENST00000353224	NM_177990.2	294	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	107	349	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	107	349	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658469	117658469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	85	386	0	ENST00000368508.3:c.5114C>T	p.Ser1705Leu	p.S1705L	ENST00000368508	NM_002944.2	1705	tCa/tTa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858947	57858947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	233	625	0	ENST00000228682.2:c.443C>T	p.Ser148Phe	p.S148F	ENST00000228682	NM_005269.2	148	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770569	40770569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	97	342	0	ENST00000373198.4:c.2813G>A	p.Gly938Glu	p.G938E	ENST00000373198	NM_133170.3	938	gGg/gAg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347270	89347270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	251	658	0	ENST00000301030.4:c.5680C>T	p.Pro1894Ser	p.P1894S	ENST00000301030	NM_001256183.1	1894	Ccc/Tcc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215582	5215582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	242	679	0	ENST00000357368.4:c.4121C>T	p.Pro1374Leu	p.P1374L	ENST00000357368	NM_002850.3	1374	cCc/cTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	394761	394761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	123	353	1	ENST00000399788.2:c.4934C>T	p.Pro1645Leu	p.P1645L	ENST00000399788	NM_001042603.1	1645	cCa/cTa																																																																														
PAK7	0	MSKCC	GRCh37	20	9624913	9624913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	108	375	0	ENST00000353224.5:c.64C>T	p.His22Tyr	p.H22Y	ENST00000353224	NM_177990.2	22	Cat/Tat																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73775164	73775164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	252	603	0	ENST00000254810.4:c.92C>T	p.Pro31Leu	p.P31L	ENST00000254810	NM_005324.3	31	cCc/cTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118339541	118339541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	118	393	0	ENST00000534358.1:c.484C>T	p.Pro162Ser	p.P162S	ENST00000534358	NM_005933.3	162	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	66	259	0				ENST00000310581	NM_198253.2																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36937693	36937693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	236	716	0	ENST00000361632.4:c.1045C>T	p.Pro349Ser	p.P349S	ENST00000361632		349	Ccc/Tcc																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025808	1025808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	130	378	0	ENST00000358495.3:c.722C>T	p.Ser241Phe	p.S241F	ENST00000358495	NM_134424.2	241	tCc/tTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28602401	28602401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	107	364	1	ENST00000241453.7:c.1967A>G	p.Glu656Gly	p.E656G	ENST00000241453	NM_004119.2	656	gAg/gGg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2115545	2115546	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	269	608	0	ENST00000219476.3:c.1625_1626delinsTT	p.Pro542Leu	p.P542L	ENST00000219476	NM_000548.3	542	cCC/cTT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228581	36228581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	290	732	0	ENST00000222270.7:c.7595G>A	p.Arg2532Gln	p.R2532Q	ENST00000222270	NM_014727.1	2532	cGg/cAg																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881588	111881588	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	197	484	0	ENST00000393256.3:c.266T>G	p.Leu89Arg	p.L89R	ENST00000393256	NM_006538.4	89	cTg/cGg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484621	57484622	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	129	462	0	ENST00000371085.3:c.705_706delinsTT	p.Gln236Ter	p.Q236*	ENST00000371085	NM_000516.4	235	atCCag/atTTag																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29115417	29115417	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	110	331	1	ENST00000328354.6:c.649A>T	p.Arg217Ter	p.R217*	ENST00000328354	NM_007194.3	217	Aga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89176402	89176402	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	41	202	0	ENST00000336596.2:c.132G>A	p.Trp44Ter	p.W44*	ENST00000336596	NM_005233.5	44	tgG/tgA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549745	187549745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	83	274	0	ENST00000441802.2:c.4496C>T	p.Pro1499Leu	p.P1499L	ENST00000441802	NM_005245.3	1499	cCa/cTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637867	176637867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	80	409	0	ENST00000439151.2:c.2467C>T	p.Pro823Ser	p.P823S	ENST00000439151	NM_022455.4	823	Cct/Tct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979272	93979272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	56	264	0	ENST00000369303.4:c.1556C>T	p.Thr519Ile	p.T519I	ENST00000369303	NM_004440.3	519	aCt/aTt																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249680	110249681	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	208	796	0	ENST00000374672.4:c.994_995delinsTT	p.Pro332Phe	p.P332F	ENST00000374672	NM_004235.4	332	CCt/TTt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619031	37619032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	296	419	0	ENST00000447079.4:c.711dup	p.Ser238LeufsTer10	p.S238Lfs*10	ENST00000447079	NM_015083.1	236	agc/agCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579328	7579328	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	363	528	0	ENST00000269305.4:c.359del	p.Lys120SerfsTer3	p.K120Sfs*3	ENST00000269305	NM_001126112.2	120	aAg/ag																																																																														
TET1	80312	MSKCC	GRCh37	10	70451179	70451179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	126	435	0	ENST00000373644.4:c.6019G>A	p.Gly2007Ser	p.G2007S	ENST00000373644	NM_030625.2	2007	Ggt/Agt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244474	41244474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	127	374	0	ENST00000357654.3:c.3074C>A	p.Thr1025Lys	p.T1025K	ENST00000357654	NM_007294.3	1025	aCa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	55	257	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	138	488	0	ENST00000269305.4:c.658T>A	p.Tyr220Asn	p.Y220N	ENST00000269305	NM_001126112.2	220	Tat/Aat																																																																														
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	98	317	1	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856217	111856217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	71	251	0	ENST00000341259.2:c.268C>T	p.Arg90Trp	p.R90W	ENST00000341259	NM_005475.2	90	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584720	48584721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	75	286	0	ENST00000342988.3:c.799dup	p.Thr267AsnfsTer6	p.T267Nfs*6	ENST00000342988	NM_005359.5	266	-/A																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781515	135781515	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	75	274	0	ENST00000298552.3:c.1450A>G	p.Arg484Gly	p.R484G	ENST00000298552	NM_001162426.1	484	Aga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	84	327	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	153	603	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216631	2216631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	206	921	1	ENST00000398665.3:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000398665	NM_032482.2	759	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112176027	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	41	256	0	ENST00000257430.4:c.4738_4741del	p.Ile1580LeufsTer69	p.I1580Lfs*69	ENST00000257430	NM_000038.5	1579	aTTATt/at																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549404	21549404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	114	532	0	ENST00000382592.4:c.2872C>T	p.Arg958Cys	p.R958C	ENST00000382592	NM_014572.2	958	Cgc/Tgc																																																																														
JUN	3725	MSKCC	GRCh37	1	59248416	59248417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	101	508	0	ENST00000371222.2:c.326dup	p.Phe110LeufsTer200	p.F110Lfs*200	ENST00000371222	NM_002228.3	109	ggc/ggGc																																																																														
APC	324	MSKCC	GRCh37	5	112174270	112174271	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	37	264	0	ENST00000257430.4:c.2983dup	p.Cys995LeufsTer13	p.C995Lfs*13	ENST00000257430	NM_000038.5	993	-/T																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028168	69028168	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	60	392	0	ENST00000288368.4:c.3326+1G>A		p.X1109_splice	ENST00000288368	NM_024870.2	1109																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	67	493	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0046812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	99	841	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71037187	71037209	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGGTCATCATGGCTTGCAGGC	GTGGGTCATCATGGCTTGCAGGC	-			P-0046812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	31	421	0	ENST00000318789.4:c.1082_1104del	p.Arg361ProfsTer92	p.R361Pfs*92	ENST00000318789	NM_032682.5	361	cGCCTGCAAGCCATGATGACCCAC/c																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	238	137	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	335	425	0	ENST00000269305.4:c.658T>G	p.Tyr220Asp	p.Y220D	ENST00000269305	NM_001126112.2	220	Tat/Gat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125635	47125635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	146	229	0	ENST00000409792.3:c.5635C>T	p.Arg1879Cys	p.R1879C	ENST00000409792	NM_014159.6	1879	Cgc/Tgc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429349	78429349	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	328	330	0	ENST00000370768.2:c.1093C>T	p.Gln365Ter	p.Q365*	ENST00000370768	NM_003902.3	365	Caa/Taa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678472	88678472	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	218	459	0	ENST00000360948.2:c.1064A>T	p.Glu355Val	p.E355V	ENST00000360948	NM_001012338.2	355	gAg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	66	411	0				ENST00000310581	NM_198253.2																																																																																
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	33	438	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980394	7980394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	200	806	0	ENST00000319144.4:c.1189G>A	p.Ala397Thr	p.A397T	ENST00000319144	NM_001139.2	397	Gcc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	10	359	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0046817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	38	256	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061272	38061942	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCCGGCTTGTCCGGGGAGCGTGCCACCTTGACGAAGCAGTCATTGAAGGACAGCGAGTGGCGGATGGAGTTCTGCCAGCGCTGCTGGTTCTGCCGGTAATAGGGGAAGAGGTCCATGATCCACTGGTAGATCTCGCTCAGCGTGAGCATCTTGCTGGGCGCCTGCTGGATGGCCATGGTGATGAGCGAGATGTACGAGTAGGGCGGCTTGGCGTGCGGGTAGCTGCGCTTGAACGTCTTGGCGTCGCCGCCGCCGCCCGCGCGGCTGCGGCCCAGGTTGGACGGCGCGTACGCCATGGGGCTCATGCACGGGTTCATGGCGGCCGCGTAGGGGCCCAGGCCATTCATGGAGGCCGCCTGCTGCGCACCCATGGCGCCCATGCCGCTCGGGCTCAGCGCCGTACCCATGGCCGTCACGCCGGCCGCAGTCATGCTGTTCATGGCGCCCGCCGAGCCCCCCGGCATGCCGGCTACTGCGCCGGGACTCAGGCCGGCCCCTAGGCCCGGGTTGGCATAGGACATGTTGAAGGACGCCGGGGTCATGTTGCCGCTCGTAGTCATGGTGTTCATGGTCATGTAGGTGTTCATGGAGTTCATGGAGCCCAGGCCTGAGTTCATGTTGCTGACCGGGACGGAGGAGTAGGCCTGGAGTGGAGACAGCGAGTGAAGAA	GCCCGGCTTGTCCGGGGAGCGTGCCACCTTGACGAAGCAGTCATTGAAGGACAGCGAGTGGCGGATGGAGTTCTGCCAGCGCTGCTGGTTCTGCCGGTAATAGGGGAAGAGGTCCATGATCCACTGGTAGATCTCGCTCAGCGTGAGCATCTTGCTGGGCGCCTGCTGGATGGCCATGGTGATGAGCGAGATGTACGAGTAGGGCGGCTTGGCGTGCGGGTAGCTGCGCTTGAACGTCTTGGCGTCGCCGCCGCCGCCCGCGCGGCTGCGGCCCAGGTTGGACGGCGCGTACGCCATGGGGCTCATGCACGGGTTCATGGCGGCCGCGTAGGGGCCCAGGCCATTCATGGAGGCCGCCTGCTGCGCACCCATGGCGCCCATGCCGCTCGGGCTCAGCGCCGTACCCATGGCCGTCACGCCGGCCGCAGTCATGCTGTTCATGGCGCCCGCCGAGCCCCCCGGCATGCCGGCTACTGCGCCGGGACTCAGGCCGGCCCCTAGGCCCGGGTTGGCATAGGACATGTTGAAGGACGCCGGGGTCATGTTGCCGCTCGTAGTCATGGTGTTCATGGTCATGTAGGTGTTCATGGAGTTCATGGAGCCCAGGCCTGAGTTCATGTTGCTGACCGGGACGGAGGAGTAGGCCTGGAGTGGAGACAGCGAGTGAAGAA	-			P-0046817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	16	557	0	ENST00000250448.2:c.73-26_717del		p.X25_splice	ENST00000250448	NM_004496.3	25																																																																															
SLX4	84464	MSKCC	GRCh37	16	3642710	3642710	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	45	449	0	ENST00000294008.3:c.2317C>G	p.Leu773Val	p.L773V	ENST00000294008	NM_032444.2	773	Ctg/Gtg																																																																														
REL	5966	MSKCC	GRCh37	2	61145705	61145705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	36	230	0	ENST00000295025.8:c.817G>A	p.Glu273Lys	p.E273K	ENST00000295025	NM_002908.2	273	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	112	308	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	236	647	2	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
CD274	29126	MSKCC	GRCh37	9	5465595	5465595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148141792		P-0046818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	23	121	0	ENST00000381577.3:c.779G>A	p.Arg260His	p.R260H	ENST00000381577	NM_014143.3	260	cGt/cAt																																																																														
ALK	238	MSKCC	GRCh37	2	29416343	29416343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	237	593	0	ENST00000389048.3:c.4610G>A	p.Gly1537Glu	p.G1537E	ENST00000389048	NM_004304.4	1537	gGa/gAa																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15821859	15821859	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	52	169	0	ENST00000307771.7:c.252A>C	p.Glu84Asp	p.E84D	ENST00000307771	NM_005089.3	84	gaA/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	22	312	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	78	580	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	66	345	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	56	286	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0046834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	39	214	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0046834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	39	214	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	45	227	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	114	640	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416773	121416773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	40	674	0	ENST00000257555.6:c.202C>T	p.Arg68Trp	p.R68W	ENST00000257555		68	Cgg/Tgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602848	10602848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	129	729	0	ENST00000171111.5:c.730G>A	p.Glu244Lys	p.E244K	ENST00000171111	NM_203500.1	244	Gag/Aag																																																																														
CCND2	894	MSKCC	GRCh37	12	4385386	4385386	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0046835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	39	217	0	ENST00000261254.3:c.411+1del		p.L137fs	ENST00000261254	NM_001759.3	137	ctG/ct																																																																														
PARK2	0	MSKCC	GRCh37	6	162394410	162394410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	26	275	0	ENST00000366898.1:c.658A>G	p.Lys220Glu	p.K220E	ENST00000366898	NM_004562.2	220	Aag/Gag																																																																														
AGO2	27161	MSKCC	GRCh37	8	141561495	141561495	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	119	548	2	ENST00000220592.5:c.1310T>G	p.Met437Arg	p.M437R	ENST00000220592	NM_012154.3	437	aTg/aGg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939223	76939223	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	56	485	0	ENST00000373344.5:c.1525A>G	p.Thr509Ala	p.T509A	ENST00000373344	NM_000489.3	509	Act/Gct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412252	139412252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	43	856	0	ENST00000277541.6:c.1393G>A	p.Ala465Thr	p.A465T	ENST00000277541	NM_017617.3	465	Gcc/Acc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0046836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	20	237	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
TET2	54790	MSKCC	GRCh37	4	106164884	106164884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	38	410	0	ENST00000380013.4:c.3752C>T	p.Thr1251Met	p.T1251M	ENST00000380013	NM_001127208.2	1251	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0046836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	72	441	0	ENST00000269305.4:c.96+1G>C		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
MEN1	4221	MSKCC	GRCh37	11	64573133	64573133	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	66	432	0	ENST00000337652.1:c.1174G>T	p.Glu392Ter	p.E392*	ENST00000337652	NM_130803.2	392	Gag/Tag																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575555	64575570	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GCTGTCCAATTTGGTG	GCTGTCCAATTTGGTG	-			P-0046836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	84	542	0	ENST00000337652.1:c.462_477del	p.Thr155ProfsTer30	p.T155Pfs*30	ENST00000337652	NM_130803.2	154	ggCACCAAATTGGACAGC/gg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86629127	86629127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	27	262	0	ENST00000274376.6:c.872C>G	p.Thr291Arg	p.T291R	ENST00000274376	NM_002890.2	291	aCa/aGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	36	367	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	134	511	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0046837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	14	336	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249511	153249511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	96	368	0	ENST00000281708.4:c.1267G>A	p.Gly423Arg	p.G423R	ENST00000281708	NM_033632.3	423	Gga/Aga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43705326	43705326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	47	550	1	ENST00000382044.4:c.5296G>A	p.Glu1766Lys	p.E1766K	ENST00000382044	NM_001141980.1	1766	Gaa/Aaa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40481448	40481449	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	129	388	0	ENST00000264657.5:c.1260dup	p.Gly421TrpfsTer7	p.G421Wfs*7	ENST00000264657	NM_139276.2	420	-/T																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25994338	25994338	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	78	278	0	ENST00000435504.4:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000435504		159	Cag/Tag																																																																														
TET2	54790	MSKCC	GRCh37	4	106196460	106196460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	61	336	0	ENST00000380013.4:c.4793A>G	p.Tyr1598Cys	p.Y1598C	ENST00000380013	NM_001127208.2	1598	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	67	601	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
MED12	9968	MSKCC	GRCh37	X	70338671	70338671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	44	576	0	ENST00000374080.3:c.67G>T	p.Asp23Tyr	p.D23Y	ENST00000374080		23	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	58	470	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27094488	27094488	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0046840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	86	350	0	ENST00000324856.7:c.3196C>T	p.Gln1066Ter	p.Q1066*	ENST00000324856	NM_006015.4	1066	Cag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589581	67589598	+	protein_altering_variant	In_Frame_Del	DEL	ATTACATGAATATAACAC	ATTACATGAATATAACAC	TAT			P-0046840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	21	193	2	ENST00000274335.5:c.1344_1361delinsTAT	p.Lys448_Thr454delinsAsnIle	p.K448_T454delinsNI	ENST00000274335		448	aaATTACATGAATATAACACt/aaTATt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	198	182	0				ENST00000310581	NM_198253.2																																																																																
KDR	3791	MSKCC	GRCh37	4	55953837	55953837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	257	377	0	ENST00000263923.4:c.3599C>T	p.Ser1200Phe	p.S1200F	ENST00000263923	NM_002253.2	1200	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	224	314	1	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																														
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	294	452	0	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133979	41133979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149675484		P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	168	511	0	ENST00000379561.5:c.1649C>T	p.Ser550Leu	p.S550L	ENST00000379561	NM_002015.3	550	tCg/tTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81381466	81381466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	214	252	1	ENST00000222390.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000222390	NM_000601.4	199	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715756	18715756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	204	253	0	ENST00000266497.5:c.3587C>T	p.Ser1196Phe	p.S1196F	ENST00000266497		1196	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612101	189612101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	335	495	0	ENST00000264731.3:c.1853G>A	p.Arg618Gln	p.R618Q	ENST00000264731	NM_003722.4	618	cGg/cAg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135385	30135385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	233	289	0	ENST00000331968.5:c.433C>T	p.Arg145Cys	p.R145C	ENST00000331968	NM_002742.2	145	Cgt/Tgt																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866466	42866466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	490	604	0	ENST00000398585.3:c.166G>A	p.Gly56Arg	p.G56R	ENST00000398585	NM_001135099.1	56	Gga/Aga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851604	134851604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	314	488	0	ENST00000398015.3:c.1010C>T	p.Ser337Phe	p.S337F	ENST00000398015	NM_004441.4	337	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29661898	29661898	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	257	336	0	ENST00000358273.4:c.5855G>A	p.Trp1952Ter	p.W1952*	ENST00000358273	NM_001042492.2	1952	tGg/tAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189612286	189612286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	235	281	0	ENST00000264731.3:c.2038G>A	p.Glu680Lys	p.E680K	ENST00000264731	NM_003722.4	680	Gag/Aag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59857686	59857686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	199	270	0	ENST00000259008.2:c.1871C>T	p.Ser624Leu	p.S624L	ENST00000259008	NM_032043.2	624	tCg/tTg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517785	176517785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	204	541	0	ENST00000292408.4:c.395C>T	p.Ser132Phe	p.S132F	ENST00000292408	NM_213647.1	132	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	29551311	29551311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	346	555	0	ENST00000389048.3:c.1319C>T	p.Ser440Phe	p.S440F	ENST00000389048	NM_004304.4	440	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092764	27092764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	162	386	0	ENST00000324856.7:c.2785C>T	p.Pro929Ser	p.P929S	ENST00000324856	NM_006015.4	929	Cct/Tct																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495442	56495442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	246	559	0	ENST00000267101.3:c.3632C>T	p.Pro1211Leu	p.P1211L	ENST00000267101	NM_001982.3	1211	cCc/cTc																																																																														
CBL	867	MSKCC	GRCh37	11	119156120	119156121	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	353	513	0	ENST00000264033.4:c.1785_1786delinsTT	p.Pro596Ser	p.P596S	ENST00000264033	NM_005188.3	595	atCCcc/atTTcc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888192	112888222	+	frameshift_variant	Frame_Shift_Del	DEL	AAATTTGCCACTTTGGCTGAGTTGGTCCAGT	AAATTTGCCACTTTGGCTGAGTTGGTCCAGT	-			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	206	433	0	ENST00000351677.2:c.209_239del	p.Lys70IlefsTer9	p.K70Ifs*9	ENST00000351677	NM_002834.3	70	AAATTTGCCACTTTGGCTGAGTTGGTCCAGTat/at																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112915776	112915777	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	238	288	0	ENST00000351677.2:c.1049_1050delinsTT	p.Ser350Phe	p.S350F	ENST00000351677	NM_002834.3	350	tCC/tTT																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004204	29004205	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	82	292	0	ENST00000282397.4:c.1088_1089delinsTT	p.Pro363Leu	p.P363L	ENST00000282397	NM_002019.4	363	cCC/cTT																																																																														
EZH1	2145	MSKCC	GRCh37	17	40857116	40857116	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	252	345	0	ENST00000428826.2:c.1925A>T	p.Tyr642Phe	p.Y642F	ENST00000428826		642	tAc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733286	40733286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	135	408	0	ENST00000373198.4:c.3520G>A	p.Glu1174Lys	p.E1174K	ENST00000373198	NM_133170.3	1174	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41548233	41548234	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	113	233	1	ENST00000263253.7:c.3021_3022delinsAA	p.Met1007_Glu1008delinsIleLys	p.M1007_E1008delinsIK	ENST00000263253	NM_001429.3	1007	atGGaa/atAAaa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127499	55127499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	277	349	1	ENST00000257290.5:c.287G>A	p.Gly96Glu	p.G96E	ENST00000257290	NM_006206.4	96	gGg/gAg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675973	30675973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	448	522	0	ENST00000376406.3:c.2383G>A	p.Val795Ile	p.V795I	ENST00000376406	NM_014641.2	795	Gtt/Att																																																																														
MED12	9968	MSKCC	GRCh37	X	70348978	70348978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	446	241	0	ENST00000374080.3:c.3490G>A	p.Asp1164Asn	p.D1164N	ENST00000374080		1164	Gac/Aac																																																																														
POLE	5426	MSKCC	GRCh37	12	133241895	133241895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	154	439	0	ENST00000320574.5:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000320574	NM_006231.2	821	Cgc/Tgc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	142	311	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	221	547	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	28	120	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	103	239	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	111	379	1	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	121	312	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	160	510	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	226	604	2	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	51	220	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376675	8376675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	158	399	1	ENST00000356435.5:c.4438G>A	p.Val1480Ile	p.V1480I	ENST00000356435		1480	Gtt/Att																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738073	145738073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	701	818	0	ENST00000428558.2:c.2837G>A	p.Arg946His	p.R946H	ENST00000428558	NM_004260.3	946	cGt/cAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	121	385	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	482	739	2	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																																																														
NF2	4771	MSKCC	GRCh37	22	30064376	30064376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	122	304	0	ENST00000338641.4:c.940G>A	p.Asp314Asn	p.D314N	ENST00000338641	NM_000268.3	314	Gat/Aat																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620541	52620541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141958485		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	201	439	0	ENST00000394830.3:c.3212G>A	p.Arg1071His	p.R1071H	ENST00000394830	NM_018313.4	1071	cGc/cAc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104359285	104359285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	169	469	0	ENST00000369902.3:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000369902	NM_016169.3	336	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112175902	112175903	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	52	170	0	ENST00000257430.4:c.4612_4613del	p.Glu1538IlefsTer5	p.E1538Ifs*5	ENST00000257430	NM_000038.5	1537	acAGaa/acaa																																																																														
BARD1	580	MSKCC	GRCh37	2	215674196	215674196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	62	707	0	ENST00000260947.4:c.98C>T	p.Ala33Val	p.A33V	ENST00000260947	NM_000465.2	33	gCc/gTc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46603871	46603871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	166	519	1	ENST00000263734.3:c.1228G>A	p.Ala410Thr	p.A410T	ENST00000263734	NM_001430.4	410	Gcc/Acc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068315	30068315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141649026		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	95	241	0	ENST00000331968.5:c.2084G>A	p.Arg695Gln	p.R695Q	ENST00000331968	NM_002742.2	695	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578184	7578184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146340390		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	248	500	1	ENST00000269305.4:c.665C>T	p.Pro222Leu	p.P222L	ENST00000269305	NM_001126112.2	222	cCg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100181	27100182	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	77	447	0	ENST00000324856.7:c.3999_4001dupGCA	p.Gln1334dup	p.Q1334dup	ENST00000324856	NM_006015.4	1334	ccg/ccGCAg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134884875	134884875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	195	534	1	ENST00000398015.3:c.1651G>A	p.Val551Met	p.V551M	ENST00000398015	NM_004441.4	551	Gtg/Atg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123276929	123276929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200204947		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	112	255	0	ENST00000358487.5:c.988C>T	p.Arg330Trp	p.R330W	ENST00000358487	NM_000141.4	330	Cgg/Tgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946495	71946495	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	147	411	0	ENST00000298229.2:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000298229	NM_001567.3	887	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29509579	29509579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	154	422	0	ENST00000358273.4:c.784C>T	p.Arg262Cys	p.R262C	ENST00000358273	NM_001042492.2	262	Cgt/Tgt																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30293209	30293209	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	123	333	0	ENST00000322652.5:c.503del	p.Asn168MetfsTer22	p.N168Mfs*22	ENST00000322652	NM_015355.2	167	Aaa/aa																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631620	90631620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	242	608	1	ENST00000330062.3:c.649G>A	p.Val217Met	p.V217M	ENST00000330062	NM_002168.2	217	Gtg/Atg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43720287	43720287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151132652		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	185	460	1	ENST00000382044.4:c.3755G>A	p.Arg1252His	p.R1252H	ENST00000382044	NM_001141980.1	1252	cGc/cAc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12627233	12627233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	147	408	0	ENST00000251849.4:c.1483C>T	p.Arg495Cys	p.R495C	ENST00000251849	NM_002880.3	495	Cgc/Tgc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40858095	40858095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	242	522	0	ENST00000428826.2:c.1769G>T	p.Gly590Val	p.G590V	ENST00000428826		590	gGg/gTg																																																																														
B2M	567	MSKCC	GRCh37	15	45003773	45003773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	168	514	0	ENST00000558401.1:c.29T>C	p.Leu10Pro	p.L10P	ENST00000558401	NM_004048.2	10	cTc/cCc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656908	45656908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	220	559	1	ENST00000407780.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000407780	NM_001283052.1	83	cGa/cAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508460	106508460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	93	340	0	ENST00000359195.3:c.454C>T	p.Arg152Trp	p.R152W	ENST00000359195	NM_002649.2	152	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108172373	108172373	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	79	254	0	ENST00000278616.4:c.5178-2A>G		p.X1726_splice	ENST00000278616	NM_000051.3	1726																																																																															
BCOR	54880	MSKCC	GRCh37	X	39931970	39931970	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	220	344	0	ENST00000378444.4:c.2629A>G	p.Thr877Ala	p.T877A	ENST00000378444	NM_001123385.1	877	Acc/Gcc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295788	212295788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	115	448	0	ENST00000342788.4:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000342788	NM_005235.2	842	cGg/cAg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162117	38162117	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115403388		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	115	309	0	ENST00000317025.8:c.2599G>A	p.Val867Ile	p.V867I	ENST00000317025	NM_023034.1	867	Gtt/Att																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420526	49420526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	207	625	0	ENST00000301067.7:c.15223G>A	p.Gly5075Arg	p.G5075R	ENST00000301067	NM_003482.3	5075	Ggg/Agg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52613085	52613085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	136	317	0	ENST00000394830.3:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000394830	NM_018313.4	1148	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056208	27056208	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	113	535	0	ENST00000324856.7:c.1204T>G	p.Ser402Ala	p.S402A	ENST00000324856	NM_006015.4	402	Tcg/Gcg																																																																														
RFWD2	0	MSKCC	GRCh37	1	175956092	175956092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	100	292	0	ENST00000367669.3:c.2120C>T	p.Ala707Val	p.A707V	ENST00000367669	NM_022457.5	707	gCa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420852	49420852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	166	511	1	ENST00000301067.7:c.14897G>A	p.Arg4966Gln	p.R4966Q	ENST00000301067	NM_003482.3	4966	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431843	49431843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	177	605	3	ENST00000301067.7:c.9296G>A	p.Arg3099His	p.R3099H	ENST00000301067	NM_003482.3	3099	cGc/cAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118901	115118901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	77	283	1	ENST00000257566.3:c.440C>T	p.Ala147Val	p.A147V	ENST00000257566	NM_016569.3	147	gCc/gTc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630780	90630780	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	130	383	0	ENST00000330062.3:c.706T>G	p.Phe236Val	p.F236V	ENST00000330062	NM_002168.2	236	Ttc/Gtc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343713	343713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	218	658	0	ENST00000262320.3:c.1961C>T	p.Ser654Leu	p.S654L	ENST00000262320	NM_003502.3	654	tCg/tTg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216569	7216569	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	46	489	0	ENST00000380728.2:c.766A>G	p.Met256Val	p.M256V	ENST00000380728		256	Atg/Gtg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440942	56440942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	214	557	0	ENST00000407977.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000407977		132	cGa/cAa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58725439	58725439	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	136	372	0	ENST00000305921.3:c.1013T>C	p.Leu338Pro	p.L338P	ENST00000305921	NM_003620.3	338	cTg/cCg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936747	78936747	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	193	684	0	ENST00000306801.3:c.3829A>G	p.Thr1277Ala	p.T1277A	ENST00000306801	NM_020761.2	1277	Acc/Gcc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5229543	5229543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	58	115	0	ENST00000357368.4:c.2308G>T	p.Gly770Trp	p.G770W	ENST00000357368	NM_002850.3	770	Ggg/Tgg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246888	10246888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	521	712	1	ENST00000340748.4:c.4517G>A	p.Arg1506Gln	p.R1506Q	ENST00000340748		1506	cGg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303094	15303094	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	211	773	0	ENST00000263388.2:c.356T>C	p.Leu119Pro	p.L119P	ENST00000263388	NM_000435.2	119	cTg/cCg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950304	17950304	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	214	617	0	ENST00000458235.1:c.1423T>G	p.Cys475Gly	p.C475G	ENST00000458235	NM_000215.3	475	Tgt/Ggt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211108	36211108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150247325		P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	89	740	0	ENST00000222270.7:c.859C>T	p.Arg287Cys	p.R287C	ENST00000222270	NM_014727.1	287	Cgt/Tgt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505421	25505421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	138	656	0	ENST00000264709.3:c.337G>A	p.Gly113Arg	p.G113R	ENST00000264709	NM_175629.2	113	Ggg/Agg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48025889	48025890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	99	254	0	ENST00000234420.5:c.768dup	p.Asp257Ter	p.D257*	ENST00000234420	NM_000179.2	256	agt/agTt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198260936	198260936	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	166	490	0	ENST00000335508.6:c.3383T>C	p.Val1128Ala	p.V1128A	ENST00000335508	NM_012433.2	1128	gTa/gCa																																																																														
CASP8	841	MSKCC	GRCh37	2	202149814	202149814	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	42	488	0	ENST00000358485.4:c.1255T>C	p.Cys419Arg	p.C419R	ENST00000358485	NM_001080125.1	419	Tgt/Cgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101089	41101089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	172	590	0	ENST00000373198.4:c.1267A>G	p.Thr423Ala	p.T423A	ENST00000373198	NM_133170.3	423	Acc/Gcc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44515847	44515847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	37	385	0	ENST00000291552.4:c.206T>C	p.Val69Ala	p.V69A	ENST00000291552	NM_006758.2	69	gTg/gCg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29106001	29106001	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	112	254	0	ENST00000328354.6:c.839T>C	p.Leu280Pro	p.L280P	ENST00000328354	NM_007194.3	280	cTa/cCa																																																																														
EP300	2033	MSKCC	GRCh37	22	41533737	41533737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	145	406	1	ENST00000263253.7:c.1703G>A	p.Arg568Gln	p.R568Q	ENST00000263253	NM_001429.3	568	cGg/cAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713673	30713673	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	149	512	0	ENST00000359013.4:c.1073T>G	p.Leu358Arg	p.L358R	ENST00000359013	NM_001024847.2	358	cTa/cGa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436335	52436335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	187	696	2	ENST00000460680.1:c.2159G>A	p.Arg720His	p.R720H	ENST00000460680	NM_004656.3	720	cGc/cAc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430666	181430666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	175	646	0	ENST00000325404.1:c.518T>C	p.Met173Thr	p.M173T	ENST00000325404	NM_003106.3	173	aTg/aCg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808020	1808020	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	300	743	0	ENST00000260795.2:c.1996T>G	p.Leu666Val	p.L666V	ENST00000260795		666	Ttg/Gtg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867491	35867491	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	67	218	0	ENST00000303115.3:c.305T>C	p.Ile102Thr	p.I102T	ENST00000303115	NM_002185.3	102	aTt/aCt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176683958	176683958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	90	363	0	ENST00000439151.2:c.4772A>G	p.His1591Arg	p.H1591R	ENST00000439151	NM_022455.4	1591	cAt/cGt																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910669	29910669	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	277	885	0	ENST00000376809.5:c.209A>C	p.Glu70Ala	p.E70A	ENST00000376809	NM_002116.7	70	gAg/gCg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672867	30672867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	187	524	0	ENST00000376406.3:c.4093T>C	p.Ser1365Pro	p.S1365P	ENST00000376406	NM_014641.2	1365	Tca/Cca																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935655	13935655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	117	408	0	ENST00000405192.2:c.1201A>G	p.Met401Val	p.M401V	ENST00000405192	NM_001163147.1	401	Atg/Gtg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730011	41730011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	206	506	0	ENST00000242208.4:c.518T>C	p.Ile173Thr	p.I173T	ENST00000242208	NM_002192.2	173	aTc/aCc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133825	38133825	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	210	568	0	ENST00000317025.8:c.4061A>G	p.Gln1354Arg	p.Q1354R	ENST00000317025	NM_023034.1	1354	cAg/cGg																																																																														
AR	367	MSKCC	GRCh37	X	66765402	66765403	+	missense_variant	Missense_Mutation	DNP	CG	CG	GC			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	146	345	0	ENST00000374690.3:c.414_415delinsGC	p.Val139Leu	p.V139L	ENST00000374690	NM_000044.3	138	gcCGtg/gcGCtg																																																																														
MED12	9968	MSKCC	GRCh37	X	70356449	70356449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	197	239	0	ENST00000374080.3:c.5344C>T	p.Arg1782Cys	p.R1782C	ENST00000374080		1782	Cgc/Tgc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	180	525	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	177	314	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	351	348	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32968878	32968878	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	81	271	0	ENST00000380152.3:c.9311delA	p.Lys3104SerfsTer4	p.K3104Sfs*4	ENST00000380152		3103	atA/at																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932666	39932666	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	234	853	0	ENST00000378444.4:c.1933G>C	p.Ala645Pro	p.A645P	ENST00000378444	NM_001123385.1	645	Gca/Cca																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81957132	81957132	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	182	472	0	ENST00000359376.3:c.2350C>T	p.Arg784Ter	p.R784*	ENST00000359376	NM_002661.3	784	Cga/Tga																																																																														
MPL	4352	MSKCC	GRCh37	1	43812272	43812272	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	181	486	0	ENST00000372470.3:c.1139del	p.Gly380AlafsTer116	p.G380Afs*116	ENST00000372470	NM_005373.2	379	ctG/ct																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14303168	14303179	+	inframe_deletion	In_Frame_Del	DEL	ATGGAAAGCTTG	ATGGAAAGCTTG	-			P-0017604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	132	374	0	ENST00000256196.4:c.496_507del	p.Gln166_His169del	p.Q166_H169del	ENST00000256196		166	CAAGCTTTCCAT/-																																																																														
CCND2	894	MSKCC	GRCh37	12	4409164	4409164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	224	368	0	ENST00000261254.3:c.859A>G	p.Ile287Val	p.I287V	ENST00000261254	NM_001759.3	287	Atc/Gtc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870825	12870838	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGGCAGGCGGA	GCCAGGCAGGCGGA	-			P-0017604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			276	137	205	0	ENST00000228872.4:c.54_67del	p.Arg19ProfsTer101	p.R19Pfs*101	ENST00000228872	NM_004064.3	18	GCCAGGCAGGCGGAg/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			256	156	173	1				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			346	130	199	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310896	123310896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			374	106	386	0	ENST00000358487.5:c.532C>T	p.Arg178Cys	p.R178C	ENST00000358487	NM_000141.4	178	Cgc/Tgc																																																																														
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			438	162	306	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																														
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			229	86	172	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341925	8341925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			260	62	280	0	ENST00000356435.5:c.4715G>A	p.Arg1572Lys	p.R1572K	ENST00000356435		1572	aGa/aAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929432	81929432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			329	75	379	0	ENST00000359376.3:c.1093G>A	p.Asp365Asn	p.D365N	ENST00000359376	NM_002661.3	365	Gat/Aat																																																																														
NF1	4763	MSKCC	GRCh37	17	29556852	29556852	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			187	159	192	0	ENST00000358273.4:c.2851-1G>A		p.X951_splice	ENST00000358273	NM_001042492.2	951																																																																															
PAK7	0	MSKCC	GRCh37	20	9560970	9560970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			376	95	336	0	ENST00000353224.5:c.812C>T	p.Ser271Leu	p.S271L	ENST00000353224	NM_177990.2	271	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420082	41420082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			209	125	241	0	ENST00000373198.4:c.239C>T	p.Ser80Phe	p.S80F	ENST00000373198	NM_133170.3	80	tCt/tTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923328	9923328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			375	106	388	0	ENST00000330684.3:c.1959G>A	p.Met653Ile	p.M653I	ENST00000330684	NM_001134407.1	653	atG/atA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858394	9858394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			268	76	333	0	ENST00000330684.3:c.3007G>A	p.Glu1003Lys	p.E1003K	ENST00000330684	NM_001134407.1	1003	Gaa/Aaa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69631183	69631183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			466	99	322	0	ENST00000334134.2:c.229G>A	p.Glu77Lys	p.E77K	ENST00000334134	NM_005247.2	77	Gag/Aag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244973	123244973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			428	125	471	0	ENST00000358487.5:c.2131G>A	p.Glu711Lys	p.E711K	ENST00000358487	NM_000141.4	711	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435313	18435313	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			249	132	226	0	ENST00000266497.5:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000266497		100	Caa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691122	18691122	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			380	88	250	0	ENST00000266497.5:c.3233T>G	p.Met1078Arg	p.M1078R	ENST00000266497		1078	aTg/aGg																																																																														
NF1	4763	MSKCC	GRCh37	17	29556190	29556190	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			107	40	118	0	ENST00000358273.4:c.2557C>T	p.Gln853Ter	p.Q853*	ENST00000358273	NM_001042492.2	853	Cag/Tag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533887	63533887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			353	84	352	0	ENST00000307078.5:c.1267C>T	p.Leu423Phe	p.L423F	ENST00000307078	NM_004655.3	423	Ctc/Ttc																																																																														
YES1	7525	MSKCC	GRCh37	18	743053	743053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			483	278	424	0	ENST00000314574.4:c.925C>T	p.Pro309Ser	p.P309S	ENST00000314574	NM_005433.3	309	Cca/Tca																																																																														
YES1	7525	MSKCC	GRCh37	18	756559	756559	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			250	147	264	0	ENST00000314574.4:c.269C>T	p.Thr90Ile	p.T90I	ENST00000314574	NM_005433.3	90	aCa/aTa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223009	5223009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			433	263	437	0	ENST00000357368.4:c.2794C>T	p.Pro932Ser	p.P932S	ENST00000357368	NM_002850.3	932	Ccg/Tcg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257451	19257451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			761	191	619	0	ENST00000162023.5:c.682C>T	p.Leu228Phe	p.L228F	ENST00000162023		228	Ctc/Ttc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213971	36213971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			743	177	641	0	ENST00000222270.7:c.2797G>T	p.Gly933Trp	p.G933W	ENST00000222270	NM_014727.1	933	Ggg/Tgg																																																																														
AXL	558	MSKCC	GRCh37	19	41743906	41743906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			696	152	642	0	ENST00000301178.4:c.841G>A	p.Glu281Lys	p.E281K	ENST00000301178	NM_021913.4	281	Gag/Aag																																																																														
CIC	23152	MSKCC	GRCh37	19	42793162	42793162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			698	133	534	0	ENST00000575354.2:c.1054C>T	p.Pro352Ser	p.P352S	ENST00000575354	NM_015125.3	352	Ccc/Tcc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460345	149460345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			190	175	318	0	ENST00000286301.3:c.292C>T	p.His98Tyr	p.H98Y	ENST00000286301	NM_005211.3	98	Cac/Tac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642486	117642486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			178	305	492	0	ENST00000368508.3:c.5713G>A	p.Glu1905Lys	p.E1905K	ENST00000368508	NM_002944.2	1905	Gag/Aag																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345809	152345809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			494	87	318	0	ENST00000359321.1:c.761C>T	p.Ser254Leu	p.S254L	ENST00000359321	NM_005431.1	254	tCa/tTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486155	8486155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			326	78	308	0	ENST00000356435.5:c.2662G>A	p.Gly888Arg	p.G888R	ENST00000356435		888	Gga/Aga																																																																														
BTK	695	MSKCC	GRCh37	X	100626629	100626629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			72	174	129	0	ENST00000308731.7:c.301C>T	p.Pro101Ser	p.P101S	ENST00000308731	NM_000061.2	101	Ccc/Tcc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117874083	117874094	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTCAGGCAGT	AAGTCAGGCAGT	G			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			234	112	199	0	ENST00000297338.2:c.360_371delACTGCCTGACTTinsC	p.Leu121ArgfsTer2	p.L121Rfs*2	ENST00000297338	NM_006265.2	120	ccACTGCCTGACTTa/ccCa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797951	45797951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			474	140	445	1	ENST00000372115.3:c.778C>T	p.Arg260Trp	p.R260W	ENST00000372115	NM_001048171.1	260	Cgg/Tgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68939505	68939505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			404	79	257	0	ENST00000288368.4:c.490G>A	p.Gly164Arg	p.G164R	ENST00000288368	NM_024870.2	164	Gga/Aga																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666693	206666693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			807	149	356	0	ENST00000367120.3:c.2027G>A	p.Arg676Gln	p.R676Q	ENST00000367120	NM_014002.3	676	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715389	117715389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			182	83	224	0	ENST00000368508.3:c.1100G>A	p.Gly367Glu	p.G367E	ENST00000368508	NM_002944.2	367	gGa/gAa																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732890	74732890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			180	44	88	1	ENST00000359995.5:c.353G>A	p.Arg118Gln	p.R118Q	ENST00000359995	NM_001195427.1	118	cGg/cAg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622586	158622586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			372	96	387	0	ENST00000263640.3:c.913T>G	p.Cys305Gly	p.C305G	ENST00000263640	NM_001105.4	305	Tgc/Ggc																																																																														
TET2	54790	MSKCC	GRCh37	4	106155373	106155373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			391	77	332	0	ENST00000380013.4:c.274G>A	p.Gly92Arg	p.G92R	ENST00000380013	NM_001127208.2	92	Gga/Aga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285684	87285684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs76318698		P-0021847-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			382	101	325	0	ENST00000277120.3:c.21G>A	p.Trp7Ter	p.W7*	ENST00000277120		7	tgG/tgA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	78	241	0	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610330	10610330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	308	994	0	ENST00000171111.5:c.380G>A	p.Gly127Asp	p.G127D	ENST00000171111	NM_203500.1	127	gGt/gAt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038828	47038828	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	288	934	0	ENST00000329236.7:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000329236	NM_001204466.1	202	Cag/Tag																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871632	35871632	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	83	298	1	ENST00000216797.5:c.874del	p.Glu292SerfsTer24	p.E292Sfs*24	ENST00000216797	NM_020529.2	292	Gag/ag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992625	72992625	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	166	512	0	ENST00000268489.5:c.1420G>T	p.Glu474Ter	p.E474*	ENST00000268489	NM_006885.3	474	Gag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1207118	1207119	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	291	875	0	ENST00000326873.7:c.208dup	p.Glu70GlyfsTer93	p.E70Gfs*93	ENST00000326873	NM_000455.4	69	tcg/tcGg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867553	35867553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	56	216	0	ENST00000303115.3:c.367C>A	p.Leu123Ile	p.L123I	ENST00000303115	NM_002185.3	123	Cta/Ata																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286533	33286533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	159	423	0	ENST00000374542.5:c.2210C>T	p.Ser737Leu	p.S737L	ENST00000374542	NM_001141970.1	737	tCa/tTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8375970	8375970	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	91	332	0	ENST00000356435.5:c.4627C>G	p.Pro1543Ala	p.P1543A	ENST00000356435		1543	Cct/Gct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0046474-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	45	359	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604819	48604826	+	frameshift_variant	Frame_Shift_Del	DEL	CCCACAAC	CCCACAAC	-			P-0046474-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			76	35	297	0	ENST00000342988.3:c.1642_1649del	p.Pro548PhefsTer26	p.P548Ffs*26	ENST00000342988	NM_005359.5	547	gaCCCACAACct/gact																																																																														
TP53	7157	MSKCC	GRCh37	17	7573980	7573980	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046474-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			61	67	675	0	ENST00000269305.4:c.1047del	p.Glu349AspfsTer21	p.E349Dfs*21	ENST00000269305	NM_001126112.2	349	gaA/ga																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075368	8075368	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0046474-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			78	32	209	0	ENST00000377482.5:c.202G>C	p.Gly68Arg	p.G68R	ENST00000377482	NM_018948.3	68	Ggg/Cgg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0046655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	33	293	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866707	37866707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	528	612	0	ENST00000269571.5:c.874G>C	p.Gly292Arg	p.G292R	ENST00000269571		292	Ggc/Cgc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350291	15350291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	66	632	1	ENST00000263377.2:c.3488G>A	p.Arg1163Gln	p.R1163Q	ENST00000263377	NM_058243.2	1163	cGg/cAg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149504392	149504392	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	51	482	0	ENST00000261799.4:c.1810C>T	p.Arg604Cys	p.R604C	ENST00000261799	NM_002609.3	604	Cgc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604725	48604726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0046655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	39	380	0	ENST00000342988.3:c.1549_1550del	p.Ser517HisfsTer9	p.S517Hfs*9	ENST00000342988	NM_005359.5	516	cAG/c																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023348	27023348	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	39	262	0	ENST00000324856.7:c.454C>T	p.Gln152Ter	p.Q152*	ENST00000324856	NM_006015.4	152	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	635	528	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974770	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGT			P-0046661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	59	266	0	ENST00000304494.5:c.52_57dup	p.Thr18_Ala19dup	p.T18_A19dup	ENST00000304494	NM_000077.4	18	-/ACGGCC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974770	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGT			P-0046661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	59	266	0	ENST00000304494.5:c.52_57dup	p.Thr18_Ala19dup	p.T18_A19dup	ENST00000304494	NM_000077.4	18	-/ACGGCC																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812269	212812269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201152419		P-0046661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	48	271	1	ENST00000342788.4:c.307C>T	p.Arg103Cys	p.R103C	ENST00000342788	NM_005235.2	103	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	288	548	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	288	548	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
INHA	3623	MSKCC	GRCh37	2	220440040	220440040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	333	820	0	ENST00000243786.2:c.893A>G	p.His298Arg	p.H298R	ENST00000243786	NM_002191.3	298	cAc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0046662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	330	636	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CDK6	1021	MSKCC	GRCh37	7	92462609	92462609	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	75	396	0	ENST00000265734.4:c.29A>G	p.Asp10Gly	p.D10G	ENST00000265734	NM_001259.6	10	gAc/gGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	132	491	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	167	341	0				ENST00000310581	NM_198253.2																																																																																
TSHR	7253	MSKCC	GRCh37	14	81609311	81609311	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	25	194	0	ENST00000298171.2:c.909G>C	p.Glu303Asp	p.E303D	ENST00000298171	NM_000369.2	303	gaG/gaC																																																																														
EZH2	2146	MSKCC	GRCh37	7	148507497	148507497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	51	253	0	ENST00000320356.2:c.1957C>G	p.Gln653Glu	p.Q653E	ENST00000320356	NM_004456.4	653	Caa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	126	285	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551461	150551461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	137	703	0	ENST00000369026.2:c.546C>G	p.Ile182Met	p.I182M	ENST00000369026	NM_021960.4	182	atC/atG																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274827	38274827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	46	299	0	ENST00000425967.3:c.1753G>C	p.Asp585His	p.D585H	ENST00000425967	NM_001174067.1	585	Gat/Cat																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790830	89790830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	91	599	0	ENST00000336032.3:c.217C>G	p.Arg73Gly	p.R73G	ENST00000336032	NM_006813.2	73	Cgc/Ggc																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551448	150551448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	127	697	0	ENST00000369026.2:c.559C>T	p.Arg187Trp	p.R187W	ENST00000369026	NM_021960.4	187	Cgg/Tgg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	53	280	2	ENST00000397062.3:c.85G>A	p.Asp29Asn	p.D29N	ENST00000397062	NM_006164.4	29	Gat/Aat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373293	118373293	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	62	335	0	ENST00000534358.1:c.6686C>A	p.Ser2229Ter	p.S2229*	ENST00000534358	NM_005933.3	2229	tCa/tAa																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22161984	22161984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	71	383	0	ENST00000215832.6:c.271C>G	p.Arg91Gly	p.R91G	ENST00000215832	NM_002745.4	91	Cga/Gga																																																																														
SOS1	6654	MSKCC	GRCh37	2	39285876	39285876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	89	421	1	ENST00000402219.2:c.283G>A	p.Glu95Lys	p.E95K	ENST00000402219	NM_005633.3	95	Gaa/Aaa																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551538	150551538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	131	606	0	ENST00000369026.2:c.469G>T	p.Asp157Tyr	p.D157Y	ENST00000369026	NM_021960.4	157	Gac/Tac																																																																														
NF2	4771	MSKCC	GRCh37	22	30064428	30064428	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	61	346	0	ENST00000338641.4:c.992G>C	p.Arg331Thr	p.R331T	ENST00000338641	NM_000268.3	331	aGa/aCa																																																																														
NF2	4771	MSKCC	GRCh37	22	30067908	30067908	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	81	499	0	ENST00000338641.4:c.1093G>T	p.Glu365Ter	p.E365*	ENST00000338641	NM_000268.3	365	Gaa/Taa																																																																														
NF2	4771	MSKCC	GRCh37	22	30067911	30067911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	83	494	0	ENST00000338641.4:c.1096G>T	p.Glu366Ter	p.E366*	ENST00000338641	NM_000268.3	366	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	36	206	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	166	372	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577068	7577068	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	343	819	0	ENST00000269305.4:c.870del	p.Lys291ArgfsTer54	p.K291Rfs*54	ENST00000269305	NM_001126112.2	290	cgC/cg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180041137	180041137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	176	974	0	ENST00000261937.6:c.3262G>A	p.Asp1088Asn	p.D1088N	ENST00000261937	NM_182925.4	1088	Gac/Aac																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38184274	38184274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	29	432	1	ENST00000317025.8:c.1682C>T	p.Ser561Phe	p.S561F	ENST00000317025	NM_023034.1	561	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	69	280	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ATM	472	MSKCC	GRCh37	11	108173673	108173677	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAT	TGGAT	C			P-0046688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	18	311	1	ENST00000278616.4:c.5413_5417delinsC	p.Trp1805GlnfsTer4	p.W1805Qfs*4	ENST00000278616	NM_000051.3	1805	TGGATa/Ca																																																																														
NF2	4771	MSKCC	GRCh37	22	30054205	30054210	+	frameshift_variant	Frame_Shift_Del	DEL	GATAGC	GATAGC	T			P-0046689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	64	298	0	ENST00000338641.4:c.627_632delinsT	p.Lys209AsnfsTer17	p.K209Nfs*17	ENST00000338641	NM_000268.3	209	aaGATAGCt/aaTt																																																																														
GATA2	2624	MSKCC	GRCh37	3	128199903	128199903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	353	484	0	ENST00000341105.2:c.1402G>A	p.Gly468Ser	p.G468S	ENST00000341105	NM_032638.4	468	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	116	519	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ATR	545	MSKCC	GRCh37	3	142275378	142275379	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0046695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	39	257	0	ENST00000350721.4:c.1924_1925del	p.Leu642ValfsTer8	p.L642Vfs*8	ENST00000350721	NM_001184.3	642	CTg/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	20	391	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662320	67662320	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	46	467	0	ENST00000264010.4:c.1567del	p.Tyr523ThrfsTer61	p.Y523Tfs*61	ENST00000264010	NM_006565.3	522	ccT/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	37	701	2	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843514	156843514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137994522		P-0046697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	38	809	0	ENST00000524377.1:c.940C>T	p.Arg314Cys	p.R314C	ENST00000524377	NM_002529.3	314	Cgc/Tgc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348165	348253	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GAAGTGGTGCCAAGCGGGGGCGGGAGGCAGCTTGTGACACGGCCCTGGGGGCCCTGACGATGGATCGCCGTCCTCACCTTCCTCCTCCT	GAAGTGGTGCCAAGCGGGGGCGGGAGGCAGCTTGTGACACGGCCCTGGGGGCCCTGACGATGGATCGCCGTCCTCACCTTCCTCCTCCT	-			P-0046697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	42	1064	0	ENST00000262320.3:c.1255-2_1341del		p.X419_splice	ENST00000262320	NM_003502.3	419																																																																															
RNF43	54894	MSKCC	GRCh37	17	56440963	56440963	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0046697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	75	578	0	ENST00000407977.2:c.376-2A>G		p.X126_splice	ENST00000407977		126																																																																															
MSH2	4436	MSKCC	GRCh37	2	47703631	47703631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	119	434	1	ENST00000233146.2:c.2131C>T	p.Arg711Ter	p.R711*	ENST00000233146	NM_000251.2	711	Cga/Tga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366162	15366162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	140	576	2	ENST00000263377.2:c.1993C>T	p.Arg665Cys	p.R665C	ENST00000263377	NM_058243.2	665	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	75	353	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	26	272	2	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	50	325	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	19	413	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	159	684	4	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	289	795	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	64	714	1	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	81	490	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	71	701	2	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	127	820	6	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429977	78429978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	71	299	0	ENST00000370768.2:c.901dup	p.Ile301AsnfsTer4	p.I301Nfs*4	ENST00000370768	NM_003902.3	301	ata/aAta																																																																														
WT1	7490	MSKCC	GRCh37	11	32417886	32417886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	35	478	3	ENST00000332351.3:c.1166G>A	p.Arg389His	p.R389H	ENST00000332351	NM_024426.4	389	cGc/cAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	58	261	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663267	227663267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	105	613	0	ENST00000305123.5:c.188C>T	p.Ser63Leu	p.S63L	ENST00000305123	NM_005544.2	63	tCg/tTg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	106	534	0	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	27	300	2	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	28	199	1	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	49	926	5	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	148	672	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	50	782	6	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61724120	61724120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	76	264	0	ENST00000401558.2:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000401558	NM_003400.3	261	cGa/cAa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	153	836	1	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	47	823	4	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629339	187629339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202126944		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	159	650	3	ENST00000441802.2:c.1643G>A	p.Arg548His	p.R548H	ENST00000441802	NM_005245.3	548	cGc/cAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	54	823	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	29	328	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	152	768	6	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	57	351	1	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	130	280	4	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
PARK2	0	MSKCC	GRCh37	6	161771163	161771163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	156	699	0	ENST00000366898.1:c.1366G>A	p.Val456Ile	p.V456I	ENST00000366898	NM_004562.2	456	Gtc/Atc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	114	407	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166770	32166770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	78	854	0	ENST00000375023.3:c.4468C>T	p.Arg1490Trp	p.R1490W	ENST00000375023	NM_004557.3	1490	Cgg/Tgg																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519545	137519545	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56403507		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	82	340	0	ENST00000367739.4:c.1093G>A	p.Val365Met	p.V365M	ENST00000367739	NM_000416.2	365	Gtg/Atg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243736334	243736334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	99	288	0	ENST00000263826.5:c.713C>T	p.Ser238Leu	p.S238L	ENST00000263826	NM_005465.4	238	tCg/tTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	120	475	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	141	737	5	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	92	469	1	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39629562	39629562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	25	238	0	ENST00000262039.4:c.2260del	p.Thr754GlnfsTer7	p.T754Qfs*7	ENST00000262039	NM_002647.2	752	acA/ac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	134	679	2	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161939	47161939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	66	260	0	ENST00000409792.3:c.4187del	p.Asn1396MetfsTer16	p.N1396Mfs*16	ENST00000409792	NM_014159.6	1396	aAt/at																																																																														
CD276	80381	MSKCC	GRCh37	15	73996146	73996146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	52	1016	0	ENST00000318443.5:c.880G>A	p.Val294Met	p.V294M	ENST00000318443	NM_001024736.1	294	Gtg/Atg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084145	47084146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	103	466	0	ENST00000409792.3:c.7143dupC	p.Ser2382LeufsTer47	p.S2382Lfs*47	ENST00000409792	NM_014159.6	2381	-/C																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291860	15291860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146214060		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	191	1089	2	ENST00000263388.2:c.2906G>A	p.Arg969Gln	p.R969Q	ENST00000263388	NM_000435.2	969	cGg/cAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066648	94066648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	50	455	1	ENST00000369303.4:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000369303	NM_004440.3	371	Cgg/Tgg																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	52	240	2	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	59	289	0	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656840	45656840	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	46	619	7	ENST00000407780.3:c.316del	p.Gln106ArgfsTer11	p.Q106Rfs*11	ENST00000407780	NM_001283052.1	106	Cag/ag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211580	98211580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	117	654	0	ENST00000331920.6:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000331920	NM_000264.3	1192	cGc/cAc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	102	896	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40497641	40497641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	186	500	0	ENST00000264657.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000264657	NM_139276.2	103	cGg/cAg																																																																														
CIC	23152	MSKCC	GRCh37	19	42795066	42795066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	219	996	0	ENST00000575354.2:c.2146C>T	p.Arg716Trp	p.R716W	ENST00000575354	NM_015125.3	716	Cgg/Tgg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38282214	38282214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	112	651	0	ENST00000425967.3:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000425967	NM_001174067.1	281	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	176	1017	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	238	917	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444986	49444987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	57	641	0	ENST00000301067.7:c.2479dup	p.Gln827ProfsTer3	p.Q827Pfs*3	ENST00000301067	NM_003482.3	827	caa/cCaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	204	941	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798105	32798105	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	90	801	0	ENST00000374899.4:c.1574delG	p.Gly525AspfsTer36	p.G525Dfs*36	ENST00000374899	NM_018833.2	525	gGa/ga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11303222	11303222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	128	545	1	ENST00000361445.4:c.1361G>A	p.Arg454His	p.R454H	ENST00000361445	NM_004958.3	454	cGc/cAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639204	3639204	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	158	817	0	ENST00000294008.3:c.4435C>T	p.Arg1479Ter	p.R1479*	ENST00000294008	NM_032444.2	1479	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415639	49415639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	33	356	0	ENST00000301067.7:c.16538A>G	p.Gln5513Arg	p.Q5513R	ENST00000301067	NM_003482.3	5513	cAg/cGg																																																																														
APC	324	MSKCC	GRCh37	5	112174604	112174604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	74	322	0	ENST00000257430.4:c.3313C>T	p.Arg1105Trp	p.R1105W	ENST00000257430	NM_000038.5	1105	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434990	49434990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	125	631	0	ENST00000301067.7:c.6563G>A	p.Arg2188His	p.R2188H	ENST00000301067	NM_003482.3	2188	cGc/cAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862737	9862737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	124	515	0	ENST00000330684.3:c.2566C>T	p.Arg856Trp	p.R856W	ENST00000330684	NM_001134407.1	856	Cgg/Tgg																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281668	49281668	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201815757		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	139	685	1	ENST00000282018.3:c.715C>T	p.Arg239Trp	p.R239W	ENST00000282018	NM_020377.2	239	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133256789	133256789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	92	350	0	ENST00000320574.5:c.305C>T	p.Pro102Leu	p.P102L	ENST00000320574	NM_006231.2	102	cCg/cTg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741528	17741528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	88	432	1	ENST00000250003.3:c.199G>A	p.Ala67Thr	p.A67T	ENST00000250003	NM_002478.4	67	Gcg/Acg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098009	178098009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	81	287	0	ENST00000397062.3:c.371C>T	p.Ala124Val	p.A124V	ENST00000397062	NM_006164.4	124	gCg/gTg																																																																														
STK40	83931	MSKCC	GRCh37	1	36823877	36823877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	59	413	0	ENST00000373129.3:c.305C>T	p.Thr102Met	p.T102M	ENST00000373129	NM_032017.1	102	aCg/aTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919865	50919866	+	splice_acceptor_variant	Splice_Site	INS	-	-	G	rs756872503		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	89	948	4	ENST00000440232.2:c.2959dup		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163784	47163784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	79	330	0	ENST00000409792.3:c.2342C>T	p.Thr781Met	p.T781M	ENST00000409792	NM_014159.6	781	aCg/aTg																																																																														
AKT1	207	MSKCC	GRCh37	14	105236688	105236688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	169	715	0	ENST00000349310.3:c.1433G>A	p.Gly478Asp	p.G478D	ENST00000349310	NM_001014432.1	478	gGc/gAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255248	16255248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	21	341	0	ENST00000375759.3:c.2513C>T	p.Thr838Met	p.T838M	ENST00000375759	NM_015001.2	838	aCg/aTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376554	118376554	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201447376		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	79	306	0	ENST00000534358.1:c.9947C>T	p.Ala3316Val	p.A3316V	ENST00000534358	NM_005933.3	3316	gCg/gTg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738112	145738112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	50	954	0	ENST00000428558.2:c.2798A>G	p.His933Arg	p.H933R	ENST00000428558	NM_004260.3	933	cAc/cGc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94219145	94219145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	96	332	0	ENST00000323929.3:c.259C>T	p.Arg87Trp	p.R87W	ENST00000323929	NM_005591.3	87	Cgg/Tgg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662085	227662085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	141	737	0	ENST00000305123.5:c.1370G>A	p.Arg457His	p.R457H	ENST00000305123	NM_005544.2	457	cGc/cAc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225998	53225998	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	193	541	1	ENST00000375401.3:c.2851C>T	p.Arg951Ter	p.R951*	ENST00000375401	NM_004187.3	951	Cga/Tga																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981407	70981407	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	85	817	1	ENST00000276594.2:c.689delC	p.Pro230GlnfsTer64	p.P230Qfs*64	ENST00000276594	NM_024504.3	230	cCa/ca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157525018	157525018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	27	283	0	ENST00000346085.5:c.4913G>A	p.Arg1638His	p.R1638H	ENST00000346085	NM_020732.3	1638	cGt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878808	151878808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	24	436	0	ENST00000262189.6:c.6137C>T	p.Pro2046Leu	p.P2046L	ENST00000262189	NM_170606.2	2046	cCa/cTa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43766907	43766907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	35	207	0	ENST00000382044.4:c.1144G>A	p.Val382Ile	p.V382I	ENST00000382044	NM_001141980.1	382	Gtt/Att																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138201244	138201244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	89	411	0	ENST00000237289.4:c.1943C>T	p.Ala648Val	p.A648V	ENST00000237289	NM_001270507.1	648	gCg/gTg																																																																														
INHA	3623	MSKCC	GRCh37	2	220439518	220439518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	91	790	0	ENST00000243786.2:c.371G>A	p.Arg124His	p.R124H	ENST00000243786	NM_002191.3	124	cGc/cAc																																																																														
ALK	238	MSKCC	GRCh37	2	30143080	30143080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	52	821	0	ENST00000389048.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000389048	NM_004304.4	149	gCg/gTg																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26046027	26046027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	64	284	3	ENST00000540144.1:c.389G>A	p.Arg130His	p.R130H	ENST00000540144	NM_003531.2	130	cGc/cAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967818	18967818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	204	885	1	ENST00000262803.5:c.1957G>A	p.Gly653Arg	p.G653R	ENST00000262803	NM_002911.3	653	Ggg/Agg																																																																														
STK40	83931	MSKCC	GRCh37	1	36823859	36823859	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	24	363	0	ENST00000373129.3:c.323A>G	p.His108Arg	p.H108R	ENST00000373129	NM_032017.1	108	cAc/cGc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306941	65306941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	104	363	0	ENST00000342505.4:c.2636G>A	p.Arg879His	p.R879H	ENST00000342505	NM_002227.2	879	cGt/cAt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78414976	78414976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	86	337	0	ENST00000370768.2:c.1790T>C	p.Val597Ala	p.V597A	ENST00000370768	NM_003902.3	597	gTt/gCt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716166	243716166	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	53	468	0	ENST00000263826.5:c.1028G>T	p.Arg343Met	p.R343M	ENST00000263826	NM_005465.4	343	aGg/aTg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63819032	63819032	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	51	169	1	ENST00000279873.7:c.1083del	p.Lys361AsnfsTer8	p.K361Nfs*8	ENST00000279873	NM_032199.2	360	cAa/ca																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154862	2154862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	125	824	1	ENST00000434045.2:c.359G>A	p.Arg120His	p.R120H	ENST00000434045	NM_001127598.1	120	cGt/cAt																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200097	67200097	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	51	611	0	ENST00000312629.5:c.484C>T	p.Arg162Ter	p.R162*	ENST00000312629	NM_003952.2	162	Cga/Tga																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518577	69518577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	109	438	0	ENST00000294312.3:c.68G>A	p.Arg23His	p.R23H	ENST00000294312	NM_005117.2	23	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948686	71948686	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	40	959	0	ENST00000298229.2:c.3398T>C	p.Val1133Ala	p.V1133A	ENST00000298229	NM_001567.3	1133	gTg/gCg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77051749	77051749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	35	465	0	ENST00000356341.3:c.1058C>T	p.Thr353Ile	p.T353I	ENST00000356341	NM_002576.4	353	aCa/aTa																																																																														
YAP1	10413	MSKCC	GRCh37	11	101984927	101984927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	25	343	0	ENST00000282441.5:c.374C>T	p.Ala125Val	p.A125V	ENST00000282441	NM_001130145.2	125	gCt/gTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118363776	118363776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	25	273	0	ENST00000534358.1:c.5009C>T	p.Ala1670Val	p.A1670V	ENST00000534358	NM_005933.3	1670	gCc/gTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800882	18800882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	25	305	0	ENST00000266497.5:c.4258G>A	p.Val1420Met	p.V1420M	ENST00000266497		1420	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433770	49433770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	44	1085	0	ENST00000301067.7:c.7783G>T	p.Gly2595Trp	p.G2595W	ENST00000301067	NM_003482.3	2595	Ggg/Tgg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120794719	120794719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	153	724	0	ENST00000257552.2:c.638G>A	p.Gly213Asp	p.G213D	ENST00000257552	NM_002442.3	213	gGc/gAc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121437125	121437125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	54	870	0	ENST00000257555.6:c.1556C>T	p.Pro519Leu	p.P519L	ENST00000257555		519	cCg/cTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133253975	133253975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	106	474	0	ENST00000320574.5:c.775C>T	p.Arg259Cys	p.R259C	ENST00000320574	NM_006231.2	259	Cgc/Tgc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562400	21562400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	142	717	1	ENST00000382592.4:c.1519G>A	p.Gly507Arg	p.G507R	ENST00000382592	NM_014572.2	507	Gga/Aga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21565452	21565452	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	44	734	0	ENST00000382592.4:c.434G>T	p.Arg145Met	p.R145M	ENST00000382592	NM_014572.2	145	aGg/aTg																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872007	35872008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	33	464	0	ENST00000216797.5:c.605dup	p.Leu202PhefsTer7	p.L202Ffs*7	ENST00000216797	NM_020529.2	202	ttg/ttTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570340	95570341	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	76	271	0	ENST00000343455.3:c.3392dup	p.Asn1131LysfsTer8	p.N1131Kfs*8	ENST00000343455	NM_177438.2	1131	aat/aaAt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222372	2222372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	133	853	1	ENST00000326181.6:c.656G>A	p.Arg219Gln	p.R219Q	ENST00000326181	NM_032271.2	219	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993380	72993380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	204	843	1	ENST00000268489.5:c.665C>T	p.Ala222Val	p.A222V	ENST00000268489	NM_006885.3	222	gCg/gTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37873588	37873588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	140	794	0	ENST00000269571.5:c.1753G>A	p.Val585Met	p.V585M	ENST00000269571		585	Gtg/Atg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78858898	78858898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	156	815	0	ENST00000306801.3:c.1933G>A	p.Ala645Thr	p.A645T	ENST00000306801	NM_020761.2	645	Gcc/Acc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220342	5220342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	133	575	0	ENST00000357368.4:c.3478C>T	p.Pro1160Ser	p.P1160S	ENST00000357368	NM_002850.3	1160	Cca/Tca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291542	15291542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	99	851	0	ENST00000263388.2:c.3092G>A	p.Arg1031His	p.R1031H	ENST00000263388	NM_000435.2	1031	cGc/cAc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279573	18279573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	39	633	1	ENST00000222254.8:c.1846C>T	p.His616Tyr	p.H616Y	ENST00000222254	NM_005027.3	616	Cac/Tac																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965716	18965716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	44	822	2	ENST00000262803.5:c.1294G>A	p.Val432Met	p.V432M	ENST00000262803	NM_002911.3	432	Gtg/Atg																																																																														
AXL	558	MSKCC	GRCh37	19	41736952	41736952	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	139	741	0	ENST00000301178.4:c.667G>T	p.Val223Leu	p.V223L	ENST00000301178	NM_021913.4	223	Gtg/Ttg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860596	45860596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	175	896	2	ENST00000391945.4:c.1411C>A	p.Leu471Met	p.L471M	ENST00000391945	NM_000400.3	471	Ctg/Atg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213254	39213254	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	51	651	0	ENST00000402219.2:c.3713T>G	p.Leu1238Trp	p.L1238W	ENST00000402219	NM_005633.3	1238	tTg/tGg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257170	198257170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	46	273	0	ENST00000335508.6:c.3772G>T	p.Ala1258Ser	p.A1258S	ENST00000335508	NM_012433.2	1258	Gcc/Tcc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31394066	31394066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	22	373	0	ENST00000328111.2:c.2353A>G	p.Lys785Glu	p.K785E	ENST00000328111	NM_006892.3	785	Aaa/Gaa																																																																														
SRC	6714	MSKCC	GRCh37	20	36012608	36012608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	39	406	2	ENST00000358208.4:c.52C>A	p.Leu18Met	p.L18M	ENST00000358208		18	Ctg/Atg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171690	36171690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	35	397	0	ENST00000300305.3:c.875C>T	p.Ala292Val	p.A292V	ENST00000300305		292	gCc/gTc																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72873612	72873613	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	106	307	0	ENST00000325599.8:c.689dup	p.Leu230PhefsTer18	p.L230Ffs*18	ENST00000325599	NM_018130.2	230	ttg/ttTg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664793	138664793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	15	252	0	ENST00000330315.3:c.772T>C	p.Tyr258His	p.Y258H	ENST00000330315	NM_023067.3	258	Tac/Cac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808312	1808312	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	171	1098	0	ENST00000260795.2:c.2075del	p.Gly692AlafsTer16	p.G692Afs*16	ENST00000260795		690	ctG/ct																																																																														
WHSC1	0	MSKCC	GRCh37	4	1956917	1956917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	64	648	0	ENST00000382891.5:c.2368G>A	p.Val790Ile	p.V790I	ENST00000382891	NM_133335.3	790	Gtt/Att																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230822	66230822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	63	274	0	ENST00000273854.3:c.2149C>A	p.Gln717Lys	p.Q717K	ENST00000273854	NM_004439.5	717	Caa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106155661	106155661	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	67	299	0	ENST00000380013.4:c.565del	p.Ser189ValfsTer18	p.S189Vfs*18	ENST00000380013	NM_001127208.2	188	Aaa/aa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168708	56168708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	93	304	0	ENST00000399503.3:c.1562A>G	p.Gln521Arg	p.Q521R	ENST00000399503	NM_005921.1	521	cAa/cGa																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158431	26158433	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	96	759	0	ENST00000289316.2:c.37_39del	p.Lys13del	p.K13del	ENST00000289316	NM_138720.2	12	AAG/-																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671990	30671990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	158	702	0	ENST00000376406.3:c.4970C>T	p.Ala1657Val	p.A1657V	ENST00000376406	NM_014641.2	1657	gCc/gTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673764	30673764	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	35	471	0	ENST00000376406.3:c.3196del	p.Leu1066PhefsTer50	p.L1066Ffs*50	ENST00000376406	NM_014641.2	1066	Ctt/tt																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324067	31324068	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	23	220	0	ENST00000412585.2:c.495_496del	p.Gln165HisfsTer11	p.Q165Hfs*11	ENST00000412585	NM_005514.6	165	caGAtc/catc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170022	32170022	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	191	978	1	ENST00000375023.3:c.3586G>T	p.Gly1196Ter	p.G1196*	ENST00000375023	NM_004557.3	1196	Gga/Tga																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797253	32797253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	72	866	0	ENST00000374899.4:c.1856G>A	p.Arg619Gln	p.R619Q	ENST00000374899	NM_018833.2	619	cGg/cAg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805362	32805363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	57	477	0	ENST00000374899.4:c.559dup	p.His187ProfsTer59	p.H187Pfs*59	ENST00000374899	NM_018833.2	187	cat/cCat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631434	117631434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	24	247	0	ENST00000368508.3:c.6244G>A	p.Ala2082Thr	p.A2082T	ENST00000368508	NM_002944.2	2082	Gct/Act																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709118	117709118	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	99	398	0	ENST00000368508.3:c.1839A>C	p.Lys613Asn	p.K613N	ENST00000368508	NM_002944.2	613	aaA/aaC																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527832	157527832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183921218		P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	74	373	0	ENST00000346085.5:c.5557G>A	p.Ala1853Thr	p.A1853T	ENST00000346085	NM_020732.3	1853	Gca/Aca																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468188	50468188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	52	690	0	ENST00000331340.3:c.1423G>A	p.Val475Ile	p.V475I	ENST00000331340	NM_006060.4	475	Gtc/Atc																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194648	29194648	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	169	921	2	ENST00000240100.2:c.1080del	p.Thr361ProfsTer62	p.T361Pfs*62	ENST00000240100	NM_001394.6	360	ccC/cc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371944	55371944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	119	352	1	ENST00000297316.4:c.634C>T	p.Pro212Ser	p.P212S	ENST00000297316	NM_022454.3	212	Cct/Tct																																																																														
TEK	7010	MSKCC	GRCh37	9	27190607	27190607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	128	536	0	ENST00000380036.4:c.1408T>C	p.Tyr470His	p.Y470H	ENST00000380036	NM_000459.3	470	Tac/Cac																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570376	87570376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	128	879	0	ENST00000277120.3:c.2116G>A	p.Val706Met	p.V706M	ENST00000277120		706	Gtg/Atg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231256	98231256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	60	711	0	ENST00000331920.6:c.2027A>G	p.Tyr676Cys	p.Y676C	ENST00000331920	NM_000264.3	676	tAc/tGc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931873	39931873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	155	358	0	ENST00000378444.4:c.2726G>A	p.Gly909Asp	p.G909D	ENST00000378444	NM_001123385.1	909	gGc/gAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931963	39931964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	162	397	0	ENST00000378444.4:c.2635dup	p.Ser879LysfsTer38	p.S879Kfs*38	ENST00000378444	NM_001123385.1	879	agc/aAgc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225904	53225904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	164	488	0	ENST00000375401.3:c.2945G>A	p.Arg982His	p.R982H	ENST00000375401	NM_004187.3	982	cGc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70360637	70360637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	11	159	0	ENST00000374080.3:c.6197A>G	p.Gln2066Arg	p.Q2066R	ENST00000374080		2066	cAg/cGg																																																																														
ATRX	546	MSKCC	GRCh37	X	76855036	76855036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	18	183	0	ENST00000373344.5:c.5800G>A	p.Gly1934Arg	p.G1934R	ENST00000373344	NM_000489.3	1934	Ggg/Agg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61710094	61710094	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	22	182	2	ENST00000401558.2:c.2810C>A	p.Ala937Asp	p.A937D	ENST00000401558	NM_003400.3	937	gCt/gAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	180	254	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	124	232	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	60	364	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	59	413	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	74	312	0	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																																																														
APC	324	MSKCC	GRCh37	5	112174559	112174559	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	58	326	0	ENST00000257430.4:c.3268C>T	p.Gln1090Ter	p.Q1090*	ENST00000257430	NM_000038.5	1090	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175416	112175417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	36	244	0	ENST00000257430.4:c.4126dup	p.Tyr1376LeufsTer10	p.Y1376Lfs*10	ENST00000257430	NM_000038.5	1375	-/T																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931682	39931682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	74	330	0	ENST00000378444.4:c.2917G>A	p.Val973Met	p.V973M	ENST00000378444	NM_001123385.1	973	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	70	537	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	70	537	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	70	537	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	64	291	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589599	67589604	+	inframe_deletion	In_Frame_Del	DEL	TCAGTT	TCAGTT	-			P-0046731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	27	189	0	ENST00000274335.5:c.1365_1370del	p.Phe456_Gln457del	p.F456_Q457del	ENST00000274335		454	acTCAGTTt/act																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844776	156844776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	121	706	1	ENST00000524377.1:c.1330C>T	p.Arg444Trp	p.R444W	ENST00000524377	NM_002529.3	444	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830585	72830586	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0046731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	96	562	1	ENST00000268489.5:c.5995_5996del	p.Lys1999GlufsTer29	p.K1999Efs*29	ENST00000268489	NM_006885.3	1999	AAg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	19	569	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	107	329	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0046734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	190	499	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0046734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	87	583	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259469	55259469	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	149	550	0	ENST00000275493.2:c.2527del	p.Val843TyrfsTer3	p.V843Yfs*3	ENST00000275493	NM_005228.3	843	Gta/ta																																																																														
RBM10	8241	MSKCC	GRCh37	X	47035913	47035913	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	355	333	0	ENST00000329236.7:c.361del	p.Leu121TrpfsTer68	p.L121Wfs*68	ENST00000329236	NM_001204466.1	120	atC/at																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678515	88678516	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0046736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	21	519	1	ENST00000360948.2:c.1020_1021delinsTT	p.Gln340_Pro341delinsHisSer	p.Q340_P341delinsHS	ENST00000360948	NM_001012338.2	340	caGCct/caTTct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170360	32170360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	31	757	0	ENST00000375023.3:c.3248C>G	p.Thr1083Ser	p.T1083S	ENST00000375023	NM_004557.3	1083	aCc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	125	329	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	178	283	0				ENST00000310581	NM_198253.2																																																																																
GATA2	2624	MSKCC	GRCh37	3	128205124	128205124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	77	741	0	ENST00000341105.2:c.317C>G	p.Ser106Cys	p.S106C	ENST00000341105	NM_032638.4	106	tCt/tGt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45799243	45799243	+	intron_variant	Intron	SNP	C	C	T			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	99	423	0	ENST00000372115.3:c.158-10G>A		p.*53*	ENST00000372115	NM_001048171.1																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32166824	32166824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	136	726	0	ENST00000375023.3:c.4414C>T	p.Arg1472Trp	p.R1472W	ENST00000375023	NM_004557.3	1472	Cgg/Tgg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11193215	11193215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	127	502	0	ENST00000361445.4:c.5286G>T	p.Gln1762His	p.Q1762H	ENST00000361445	NM_004958.3	1762	caG/caT																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733512	85733512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	33	345	0	ENST00000370580.1:c.500C>G	p.Ser167Cys	p.S167C	ENST00000370580	NM_003921.4	167	tCt/tGt																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17384925	17384925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	68	711	0	ENST00000359435.4:c.475C>G	p.Leu159Val	p.L159V	ENST00000359435	NM_001033549.1	159	Ctg/Gtg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210947	36210948	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1218	165	877	3	ENST00000222270.7:c.698_699delinsTT	p.Arg233Ile	p.R233I	ENST00000222270	NM_014727.1	233	aGG/aTT																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965393	25965393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	111	527	0	ENST00000435504.4:c.3813G>T	p.Lys1271Asn	p.K1271N	ENST00000435504		1271	aaG/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518255	187518255	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	70	295	0	ENST00000441802.2:c.12439G>C	p.Gly4147Arg	p.G4147R	ENST00000441802	NM_005245.3	4147	Ggc/Cgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1268654	1268654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1326	169	775	0	ENST00000310581.5:c.2563G>T	p.Ala855Ser	p.A855S	ENST00000310581	NM_198253.2	855	Gcg/Tcg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047907	180047907	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	217	938	0	ENST00000261937.6:c.2268C>G	p.Cys756Trp	p.C756W	ENST00000261937	NM_182925.4	756	tgC/tgG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	220	534	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	319	671	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ARAF	369	MSKCC	GRCh37	X	47429346	47429346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	322	841	0	ENST00000377045.4:c.1474G>A	p.Val492Ile	p.V492I	ENST00000377045	NM_001654.4	492	Gtc/Atc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	67	275	1	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287520	33287520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141395832		P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	73	639	1	ENST00000374542.5:c.1577G>A	p.Arg526His	p.R526H	ENST00000374542	NM_001141970.1	526	cGc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	150	565	2	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	59	202	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133573	55133573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	30	491	0	ENST00000257290.5:c.877C>T	p.Arg293Cys	p.R293C	ENST00000257290	NM_006206.4	293	Cgc/Tgc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30312660	30312660	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146187350		P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	44	459	1	ENST00000262643.3:c.641C>T	p.Ala214Val	p.A214V	ENST00000262643	NM_001238.2	214	gCg/gTg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849801	156849801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	67	526	0	ENST00000524377.1:c.2057G>A	p.Arg686His	p.R686H	ENST00000524377	NM_002529.3	686	cGc/cAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	351	425	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	24	251	0	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga																																																																														
AXL	558	MSKCC	GRCh37	19	41726544	41726544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	206	659	0	ENST00000301178.4:c.89C>T	p.Thr30Met	p.T30M	ENST00000301178	NM_021913.4	30	aCg/aTg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278073	18278073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	87	815	0	ENST00000222254.8:c.1693C>T	p.Pro565Ser	p.P565S	ENST00000222254	NM_005027.3	565	Ccg/Tcg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	114	281	0	ENST00000462284.1:c.961delC	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020764	37020764	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	56	500	2	ENST00000358127.4:c.81del	p.Phe27LeufsTer2	p.F27Lfs*2	ENST00000358127	NM_001280556.1	27	ttT/tt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1512	86	705	0	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972820	25972820	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	131	464	0	ENST00000435504.4:c.1605del	p.Lys535AsnfsTer3	p.K535Nfs*3	ENST00000435504		535	aaA/aa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936277	78936277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	246	693	1	ENST00000306801.3:c.3709C>T	p.Arg1237Cys	p.R1237C	ENST00000306801	NM_020761.2	1237	Cgc/Tgc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016565	12016565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	89	283	0	ENST00000353533.5:c.701A>G	p.Asn234Ser	p.N234S	ENST00000353533	NM_003010.3	234	aAt/aGt																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217236	7217236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	291	608	0	ENST00000380728.2:c.469delC	p.Gln157LysfsTer188	p.Q157Kfs*188	ENST00000380728		157	Caa/aa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272513	15272513	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	281	709	0	ENST00000263388.2:c.5926del	p.Leu1976TyrfsTer36	p.L1976Yfs*36	ENST00000263388	NM_000435.2	1976	Cta/ta																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404237	139404237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200699541		P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	65	955	2	ENST00000277541.6:c.2917G>A	p.Ala973Thr	p.A973T	ENST00000277541	NM_017617.3	973	Gca/Aca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210689	36210689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	298	686	0	ENST00000222270.7:c.440G>A	p.Arg147Gln	p.R147Q	ENST00000222270	NM_014727.1	147	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845550	151845550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	224	609	0	ENST00000262189.6:c.13462G>A	p.Ala4488Thr	p.A4488T	ENST00000262189	NM_170606.2	4488	Gcc/Acc																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872007	35872008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	37	479	0	ENST00000216797.5:c.605dup	p.Leu202PhefsTer7	p.L202Ffs*7	ENST00000216797	NM_020529.2	202	ttg/ttTg																																																																														
SDHB	6390	MSKCC	GRCh37	1	17359617	17359617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	131	321	1	ENST00000375499.3:c.224C>T	p.Ala75Val	p.A75V	ENST00000375499	NM_003000.2	75	gCt/gTt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549043	21549043	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	134	296	0	ENST00000382592.4:c.3233A>G	p.Asp1078Gly	p.D1078G	ENST00000382592	NM_014572.2	1078	gAt/gGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779193	3779193	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	45	562	0	ENST00000262367.5:c.5855del	p.Pro1952LeufsTer24	p.P1952Lfs*24	ENST00000262367	NM_004380.2	1952	cCt/ct																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56811554	56811554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	122	383	0	ENST00000337432.4:c.1102C>T	p.Arg368Trp	p.R368W	ENST00000337432	NM_058216.2	368	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36209117	36209117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	39	71	0	ENST00000222270.7:c.197C>T	p.Ala66Val	p.A66V	ENST00000222270	NM_014727.1	66	gCc/gTc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637247	47637248	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	159	446	0	ENST00000233146.2:c.387_388del	p.Gln130ValfsTer2	p.Q130Vfs*2	ENST00000233146	NM_000251.2	127	aaTCtc/aatc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098651	47098651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	79	656	0	ENST00000409792.3:c.6623C>A	p.Pro2208His	p.P2208H	ENST00000409792	NM_014159.6	2208	cCc/cAc																																																																														
MITF	4286	MSKCC	GRCh37	3	70014137	70014137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	179	493	0	ENST00000352241.4:c.1301C>T	p.Ala434Val	p.A434V	ENST00000352241	NM_198159.2	434	gCa/gTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928292	178928292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	157	464	0	ENST00000263967.3:c.1478A>G	p.Glu493Gly	p.E493G	ENST00000263967	NM_006218.2	493	gAa/gGa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589600	67589600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	44	187	0	ENST00000274335.5:c.1363C>T	p.Gln455Ter	p.Q455*	ENST00000274335		455	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112174845	112174845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	67	185	0	ENST00000257430.4:c.3554C>T	p.Thr1185Ile	p.T1185I	ENST00000257430	NM_000038.5	1185	aCa/aTa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32819925	32819925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	361	706	2	ENST00000354258.4:c.985C>A	p.Leu329Met	p.L329M	ENST00000354258	NM_000593.5	329	Ctg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	30	708	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	72	307	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	80	420	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986893	36986893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	170	442	0	ENST00000354822.5:c.796G>A	p.Gly266Ser	p.G266S	ENST00000354822	NM_001079668.2	266	Ggc/Agc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	350	756	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866439	42866439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61735791		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	211	900	1	ENST00000398585.3:c.193G>A	p.Ala65Thr	p.A65T	ENST00000398585	NM_001135099.1	65	Gca/Aca																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370903	55370903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	174	723	0	ENST00000297316.4:c.205C>T	p.Arg69Trp	p.R69W	ENST00000297316	NM_022454.3	69	Cgg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	111	427	2	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	29	377	0	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	64	314	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	225	942	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	175	810	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	79	422	3	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	185	857	12	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	78	835	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	136	454	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	85	264	2	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	163	333	2	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	138	336	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166916	32166916	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	142	863	1	ENST00000375023.3:c.4322del	p.Pro1441LeufsTer17	p.P1441Lfs*17	ENST00000375023	NM_004557.3	1441	cCt/ct																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	77	307	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	107	475	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																														
ARAF	369	MSKCC	GRCh37	X	47428247	47428247	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	176	382	0	ENST00000377045.4:c.1207A>G	p.Met403Val	p.M403V	ENST00000377045	NM_001654.4	403	Atg/Gtg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511172	148511172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	46	529	0	ENST00000320356.2:c.1730C>T	p.Pro577Leu	p.P577L	ENST00000320356	NM_004456.4	577	cCg/cTg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998756	100998756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	206	749	0	ENST00000325455.5:c.1046C>T	p.Ser349Leu	p.S349L	ENST00000325455	NM_001202474.3	349	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100999	41100999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	117	652	4	ENST00000373198.4:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000373198	NM_133170.3	453	Cgc/Tgc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084145	47084146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	89	432	0	ENST00000409792.3:c.7143dupC	p.Ser2382LeufsTer47	p.S2382Lfs*47	ENST00000409792	NM_014159.6	2381	-/C																																																																														
PGR	5241	MSKCC	GRCh37	11	100998627	100998629	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	124	675	1	ENST00000325455.5:c.1173_1175del	p.Glu392del	p.E392del	ENST00000325455	NM_001202474.3	391	gaGGAa/gaa																																																																														
SDHB	6390	MSKCC	GRCh37	1	17350503	17350503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201517260		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	120	574	1	ENST00000375499.3:c.607G>A	p.Gly203Arg	p.G203R	ENST00000375499	NM_003000.2	203	Gga/Aga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340450	8340450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200354236		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	83	427	0	ENST00000356435.5:c.5146G>A	p.Ala1716Thr	p.A1716T	ENST00000356435		1716	Gct/Act																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025596	1025596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	172	784	0	ENST00000358495.3:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000358495	NM_134424.2	260	cGg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152104	11152104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	136	519	0	ENST00000344626.4:c.4292G>A	p.Arg1431His	p.R1431H	ENST00000344626	NM_003072.3	1431	cGc/cAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	166	468	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209457	98209457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	148	868	0	ENST00000331920.6:c.4081G>A	p.Val1361Met	p.V1361M	ENST00000331920	NM_000264.3	1361	Gtg/Atg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	162	852	2	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231585	5231585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	100	397	1	ENST00000357368.4:c.1891C>T	p.Arg631Cys	p.R631C	ENST00000357368	NM_002850.3	631	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	180	922	1	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906370	50906370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	87	925	9	ENST00000440232.2:c.1036del	p.Glu346SerfsTer47	p.E346Sfs*47	ENST00000440232	NM_002691.3	344	tGg/tg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	29	383	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798105	32798105	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	97	779	0	ENST00000374899.4:c.1574delG	p.Gly525AspfsTer36	p.G525Dfs*36	ENST00000374899	NM_018833.2	525	gGa/ga																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798511	32798511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	62	680	0	ENST00000374899.4:c.1345C>T	p.Arg449Ter	p.R449*	ENST00000374899	NM_018833.2	449	Cga/Tga																																																																														
NUP93	9688	MSKCC	GRCh37	16	56878487	56878487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	117	381	0	ENST00000308159.5:c.2426C>T	p.Ala809Val	p.A809V	ENST00000308159	NM_014669.4	809	gCg/gTg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998256	100998256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	89	362	0	ENST00000325455.5:c.1546G>A	p.Gly516Ser	p.G516S	ENST00000325455	NM_001202474.3	516	Ggc/Agc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149465987	149465987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	224	922	1	ENST00000286301.3:c.4G>A	p.Gly2Ser	p.G2S	ENST00000286301	NM_005211.3	2	Ggc/Agc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	56	396	2	ENST00000263377.2:c.766delC	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																																																														
YES1	7525	MSKCC	GRCh37	18	756628	756628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	133	439	0	ENST00000314574.4:c.200G>T	p.Gly67Val	p.G67V	ENST00000314574	NM_005433.3	67	gGg/gTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	81	335	2	ENST00000262367.5:c.3250dupA	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372202	55372202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	144	539	3	ENST00000297316.4:c.892G>A	p.Gly298Ser	p.G298S	ENST00000297316	NM_022454.3	298	Ggc/Agc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25462047	25462047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	41	541	1	ENST00000264709.3:c.2360C>T	p.Ala787Val	p.A787V	ENST00000264709	NM_175629.2	787	gCt/gTt																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741678	17741678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	181	500	0	ENST00000250003.3:c.349C>T	p.Arg117Cys	p.R117C	ENST00000250003	NM_002478.4	117	Cgc/Tgc																																																																														
INSR	3643	MSKCC	GRCh37	19	7117191	7117191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	176	712	4	ENST00000302850.5:c.4025del	p.Gly1342AlafsTer23	p.G1342Afs*23	ENST00000302850	NM_000208.2	1342	gGc/gc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214710	36214710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	37	708	0	ENST00000222270.7:c.3136C>T	p.Arg1046Cys	p.R1046C	ENST00000222270	NM_014727.1	1046	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294907	1294907	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	29	105	0	ENST00000310581.5:c.198del	p.Ala67ProfsTer11	p.A67Pfs*11	ENST00000310581	NM_198253.2	66	ccC/cc																																																																														
CASP8	841	MSKCC	GRCh37	2	202150042	202150042	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	223	487	0	ENST00000358485.4:c.1481+2T>C		p.X494_splice	ENST00000358485	NM_001080125.1	494																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941110	36941110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	112	684	0	ENST00000361632.4:c.229C>T	p.Arg77Cys	p.R77C	ENST00000361632		77	Cgt/Tgt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156830746	156830746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	36	156	0	ENST00000524377.1:c.20G>A	p.Arg7His	p.R7H	ENST00000524377	NM_002529.3	7	cGc/cAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64126849	64126849	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	104	783	1	ENST00000334205.4:c.56-1G>A		p.X19_splice	ENST00000334205	NM_003942.2	19																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71946922	71946922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	175	797	0	ENST00000298229.2:c.2771C>T	p.Ala924Val	p.A924V	ENST00000298229	NM_001567.3	924	gCc/gTc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195818	102195818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	38	337	0	ENST00000263464.3:c.578G>A	p.Gly193Asp	p.G193D	ENST00000263464	NM_001165.4	193	gGc/gAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432290	432290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	120	526	0	ENST00000399788.2:c.2233C>T	p.Arg745Cys	p.R745C	ENST00000399788	NM_001042603.1	745	Cgt/Tgt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988412	36988412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	140	427	1	ENST00000354822.5:c.241G>A	p.Ala81Thr	p.A81T	ENST00000354822	NM_001079668.2	81	Gcg/Acg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36989269	36989269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	169	727	0	ENST00000354822.5:c.66del	p.Gly23AlafsTer11	p.G23Afs*11	ENST00000354822	NM_001079668.2	22	ccC/cc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714236	43714237	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	186	764	0	ENST00000382044.4:c.3916dup	p.Asp1306GlyfsTer64	p.D1306Gfs*64	ENST00000382044	NM_001141980.1	1306	gat/gGat																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639594	3639594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	181	955	0	ENST00000294008.3:c.4045G>A	p.Gly1349Arg	p.G1349R	ENST00000294008	NM_032444.2	1349	Ggg/Agg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3644494	3644494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	180	785	0	ENST00000294008.3:c.2120A>G	p.Lys707Arg	p.K707R	ENST00000294008	NM_032444.2	707	aAg/aGg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58734125	58734125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	75	535	0	ENST00000305921.3:c.1183C>A	p.Leu395Met	p.L395M	ENST00000305921	NM_003620.3	395	Ctg/Atg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244460	5244460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	88	877	1	ENST00000357368.4:c.1022C>T	p.Thr341Ile	p.T341I	ENST00000357368	NM_002850.3	341	aCt/aTt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290999	15290999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	208	973	2	ENST00000263388.2:c.3211G>A	p.Val1071Met	p.V1071M	ENST00000263388	NM_000435.2	1071	Gtg/Atg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919715	50919715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	154	1022	0	ENST00000440232.2:c.2883G>C	p.Gln961His	p.Q961H	ENST00000440232	NM_002691.3	961	caG/caC																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018202	48018202	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	60	530	1	ENST00000234420.5:c.402del	p.Phe134LeufsTer15	p.F134Lfs*15	ENST00000234420	NM_000179.2	133	Ttt/tt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663058	227663058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	264	562	0	ENST00000305123.5:c.397G>T	p.Gly133Trp	p.G133W	ENST00000305123	NM_005544.2	133	Ggg/Tgg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181359	185181359	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	18	252	0	ENST00000265026.3:c.1305del	p.Lys435AsnfsTer16	p.K435Nfs*16	ENST00000265026	NM_004721.4	434	Aaa/aa																																																																														
TP63	8626	MSKCC	GRCh37	3	189582135	189582135	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	131	441	1	ENST00000264731.3:c.699del	p.Ala234LeufsTer8	p.A234Lfs*8	ENST00000264731	NM_003722.4	232	Aaa/aa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803235	1803235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	175	836	1	ENST00000260795.2:c.587G>A	p.Arg196His	p.R196H	ENST00000260795		196	cGc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554941	187554941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	56	368	0	ENST00000441802.2:c.4220G>A	p.Gly1407Glu	p.G1407E	ENST00000441802	NM_005245.3	1407	gGa/gAa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797842	32797842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	67	412	0	ENST00000374899.4:c.1660del	p.Val554CysfsTer7	p.V554Cfs*7	ENST00000374899	NM_018833.2	554	Gtg/tg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677854	117677854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	55	258	0	ENST00000368508.3:c.4079T>C	p.Ile1360Thr	p.I1360T	ENST00000368508	NM_002944.2	1360	aTc/aCc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860788	151860788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	94	406	0	ENST00000262189.6:c.9874C>T	p.Pro3292Ser	p.P3292S	ENST00000262189	NM_170606.2	3292	Cca/Tca																																																																														
ATRX	546	MSKCC	GRCh37	X	76938436	76938436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	102	235	0	ENST00000373344.5:c.2312C>T	p.Ala771Val	p.A771V	ENST00000373344	NM_000489.3	771	gCg/gTg																																																																														
FAM58A	0	MSKCC	GRCh37	X	152864474	152864474	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	17	44	0	ENST00000406277.2:c.52C>A	p.Pro18Thr	p.P18T	ENST00000406277	NM_152274.4	18	Ccg/Acg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	368	744	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123722	11123722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	354	723	0	ENST00000344626.4:c.2372C>T	p.Ala791Val	p.A791V	ENST00000344626	NM_003072.3	791	gCg/gTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995569	68995569	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	444	557	0	ENST00000288368.4:c.1973C>A	p.Ser658Ter	p.S658*	ENST00000288368	NM_024870.2	658	tCg/tAg																																																																														
RB1	5925	MSKCC	GRCh37	13	48934152	48934152	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	131	234	0	ENST00000267163.4:c.610delG		p.X204_splice	ENST00000267163	NM_000321.2	204																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72241906	72241906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	378	336	0	ENST00000357731.5:c.484G>T	p.Ala162Ser	p.A162S	ENST00000357731	NM_173808.2	162	Gcc/Tcc																																																																														
FH	2271	MSKCC	GRCh37	1	241682999	241683028	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GAGGAGCCGAAGTGCTCGGTACATGGTGCT	GAGGAGCCGAAGTGCTCGGTACATGGTGCT	-			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	104	633	0	ENST00000366560.3:c.-6_24del		p.*2*	ENST00000366560	NM_000143.3																																																																																
RET	5979	MSKCC	GRCh37	10	43604677	43604677	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	400	636	0	ENST00000355710.3:c.1262A>T	p.Gln421Leu	p.Q421L	ENST00000355710	NM_020975.4	421	cAg/cTg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663186	227663186	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	707	913	0	ENST00000305123.5:c.269A>G	p.Asp90Gly	p.D90G	ENST00000305123	NM_005544.2	90	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	463	730	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	15	258	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	90	263	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	184	309	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937904	36937904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	217	1005	0	ENST00000361632.4:c.932G>A	p.Arg311His	p.R311H	ENST00000361632		311	cGc/cAc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625219	69625219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	380	960	0	ENST00000334134.2:c.574C>T	p.Arg192Trp	p.R192W	ENST00000334134	NM_005247.2	192	Cgg/Tgg																																																																														
PARK2	0	MSKCC	GRCh37	6	162683654	162684449	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACCCGAGTCAAGCTCTGGGGCTCCCGCTCACAGCCTCCCGCCGCGTTTCTGGGGTCGTCGCCTCCAGTTGCATTCATTTCTTGACCTTTTCTCCACGGTCTCTGCACAATGTGAACAATGCTCTGCTGATCCAGGTCACAATTCTGTTTGGGAGCAAGGTAAAAAAAAAAAAAAAAAAAAAGGAAATGTCAAACATGAAATGCGAGATAGAGTTTAACTTGCCCTCCGTGGTAGAAGGGAAGCAAAAGTGACATGTAACTGACCAACTTAGGTGCTCCTTTGCCCACAGCAGTTACACACTACACACGGTAGACAAACAACACTGAACTGGGGCCAGAAACAGAAATTTGGGAATACGTGAAACACAATAGAATGCTGACGTCATATTCAAAAGGACATAAAATCTAGCAGGAAAAAATAATTACCAAACTGGATCTATAAGCACAGTGAAAACAATAATTCCTTTTTTCCCCCCAAGACAGAGTCTCACTCTGTCATCCAGGCTGGAGTGCAGTGGTGTGATTTCCGCTCATTGCAACCTCTGCCTGCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGGCGGGCACCACCACACCTGGCTACGAAAAATATTCTTAAATAGTAAAACTGATTGACATCAGAATTGATATGTCATTCATCTCTGTTTTACAAAAGTACAGAAAGTGAGTTATTATCAATGAGAGGGCATTTCTTTAAAGCATCGGAAATGAATGCGTTTGAGTAGGCTCCACACACACCGCTCCACGGGCACCA	CACCCGAGTCAAGCTCTGGGGCTCCCGCTCACAGCCTCCCGCCGCGTTTCTGGGGTCGTCGCCTCCAGTTGCATTCATTTCTTGACCTTTTCTCCACGGTCTCTGCACAATGTGAACAATGCTCTGCTGATCCAGGTCACAATTCTGTTTGGGAGCAAGGTAAAAAAAAAAAAAAAAAAAAAGGAAATGTCAAACATGAAATGCGAGATAGAGTTTAACTTGCCCTCCGTGGTAGAAGGGAAGCAAAAGTGACATGTAACTGACCAACTTAGGTGCTCCTTTGCCCACAGCAGTTACACACTACACACGGTAGACAAACAACACTGAACTGGGGCCAGAAACAGAAATTTGGGAATACGTGAAACACAATAGAATGCTGACGTCATATTCAAAAGGACATAAAATCTAGCAGGAAAAAATAATTACCAAACTGGATCTATAAGCACAGTGAAAACAATAATTCCTTTTTTCCCCCCAAGACAGAGTCTCACTCTGTCATCCAGGCTGGAGTGCAGTGGTGTGATTTCCGCTCATTGCAACCTCTGCCTGCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGGCGGGCACCACCACACCTGGCTACGAAAAATATTCTTAAATAGTAAAACTGATTGACATCAGAATTGATATGTCATTCATCTCTGTTTTACAAAAGTACAGAAAGTGAGTTATTATCAATGAGAGGGCATTTCTTTAAAGCATCGGAAATGAATGCGTTTGAGTAGGCTCCACACACACCGCTCCACGGGCACCA	-			P-0046742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	35	577	0	ENST00000366898.1:c.172-652_315del		p.X58_splice	ENST00000366898	NM_004562.2	58																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	191	439	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			710	118	495	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783730	50783730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			738	40	488	0	ENST00000398568.2:c.121G>A	p.Val41Ile	p.V41I	ENST00000398568	NM_001042412.1	41	Gta/Ata																																																																														
MSH3	4437	MSKCC	GRCh37	5	79974795	79974795	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045809-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			824	47	508	0	ENST00000265081.6:c.1223C>G	p.Ser408Cys	p.S408C	ENST00000265081	NM_002439.4	408	tCt/tGt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11294235	11294235	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	178	520	3	ENST00000361445.4:c.2296C>T	p.Arg766Ter	p.R766*	ENST00000361445	NM_004958.3	766	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255835	16255835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	106	351	0	ENST00000375759.3:c.3100G>A	p.Glu1034Lys	p.E1034K	ENST00000375759	NM_015001.2	1034	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257158	16257158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	136	416	0	ENST00000375759.3:c.4423C>T	p.Arg1475Ter	p.R1475*	ENST00000375759	NM_015001.2	1475	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258758	16258758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	124	502	0	ENST00000375759.3:c.6023C>T	p.Ala2008Val	p.A2008V	ENST00000375759	NM_015001.2	2008	gCt/gTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259576	16259576	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	143	518	0	ENST00000375759.3:c.6841T>G	p.Ser2281Ala	p.S2281A	ENST00000375759	NM_015001.2	2281	Tct/Gct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259967	16259967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	158	610	3	ENST00000375759.3:c.7232C>T	p.Ser2411Leu	p.S2411L	ENST00000375759	NM_015001.2	2411	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105853	27105853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	158	496	0	ENST00000324856.7:c.5464C>T	p.Pro1822Ser	p.P1822S	ENST00000324856	NM_006015.4	1822	Cca/Tca																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933244	36933245	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	290	655	2	ENST00000361632.4:c.1872_1873delinsAT	p.Glu625Ter	p.E625*	ENST00000361632		624	tcGGag/tcATag																																																																														
MPL	4352	MSKCC	GRCh37	1	43805753	43805753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	245	767	0	ENST00000372470.3:c.809G>A	p.Gly270Glu	p.G270E	ENST00000372470	NM_005373.2	270	gGa/gAa																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733631	85733637	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTGGA	ATCTGGA	-			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	179	382	0	ENST00000370580.1:c.375_381del	p.Phe125LeufsTer21	p.F125Lfs*21	ENST00000370580	NM_003921.4	125	ttTCCAGAT/tt																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551732	150551732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	64	157	0	ENST00000369026.2:c.275C>T	p.Thr92Ile	p.T92I	ENST00000369026	NM_021960.4	92	aCc/aTc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844404	156844404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	234	811	1	ENST00000524377.1:c.1237G>A	p.Glu413Lys	p.E413K	ENST00000524377	NM_002529.3	413	Gaa/Aaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846343	156846343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	350	749	0	ENST00000524377.1:c.1784G>A	p.Gly595Glu	p.G595E	ENST00000524377	NM_002529.3	595	gGg/gAg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981532	201981532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	120	806	0	ENST00000359651.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000359651		149	gCc/gTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100730	8100730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	218	726	0	ENST00000346208.3:c.704C>T	p.Pro235Leu	p.P235L	ENST00000346208		235	cCc/cTc																																																																														
RET	5979	MSKCC	GRCh37	10	43606829	43606829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	263	861	2	ENST00000355710.3:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000355710	NM_020975.4	480	Gaa/Aaa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851318	63851318	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	194	612	0	ENST00000279873.7:c.2096T>G	p.Val699Gly	p.V699G	ENST00000279873	NM_032199.2	699	gTg/gGg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851767	63851767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	160	561	0	ENST00000279873.7:c.2545C>T	p.His849Tyr	p.H849Y	ENST00000279873	NM_032199.2	849	Cat/Tat																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925409	114925409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202133956		P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	147	555	0	ENST00000543371.1:c.1487C>T	p.Ser496Phe	p.S496F	ENST00000543371	NM_001198531.1	496	tCc/tTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123263314	123263314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	95	341	0	ENST00000358487.5:c.1429C>T	p.Pro477Ser	p.P477S	ENST00000358487	NM_000141.4	477	Cca/Tca																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123298222	123298222	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	81	305	0	ENST00000358487.5:c.632A>T	p.Asn211Ile	p.N211I	ENST00000358487	NM_000141.4	211	aAc/aTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325197	123325197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	125	481	0	ENST00000358487.5:c.131T>C	p.Ile44Thr	p.I44T	ENST00000358487	NM_000141.4	44	aTc/aCc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742960	17742960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	86	567	0	ENST00000250003.3:c.868G>A	p.Glu290Lys	p.E290K	ENST00000250003	NM_002478.4	290	Gag/Aag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64128998	64128998	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141880979		P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	199	774	0	ENST00000334205.4:c.628C>T	p.Arg210Cys	p.R210C	ENST00000334205	NM_003942.2	210	Cgt/Tgt																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625177	69625177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	202	848	1	ENST00000334134.2:c.616G>A	p.Val206Ile	p.V206I	ENST00000334134	NM_005247.2	206	Gtc/Atc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939825	71939825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	208	861	1	ENST00000298229.2:c.452C>T	p.Ser151Phe	p.S151F	ENST00000298229	NM_001567.3	151	tCt/tTt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948506	71948506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	250	965	1	ENST00000298229.2:c.3218C>T	p.Pro1073Leu	p.P1073L	ENST00000298229	NM_001567.3	1073	cCa/cTa																																																																														
PAK1	5058	MSKCC	GRCh37	11	77090994	77090994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	100	399	1	ENST00000356341.3:c.236C>T	p.Ser79Leu	p.S79L	ENST00000356341	NM_002576.4	79	tCa/tTa																																																																														
ATM	472	MSKCC	GRCh37	11	108165741	108165741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	68	314	0	ENST00000278616.4:c.4864G>A	p.Glu1622Lys	p.E1622K	ENST00000278616	NM_000051.3	1622	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118361991	118361991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	99	283	0	ENST00000534358.1:c.4777C>T	p.Arg1593Cys	p.R1593C	ENST00000534358	NM_005933.3	1593	Cgc/Tgc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376157	118376158	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	110	453	1	ENST00000534358.1:c.9550_9551delinsTT	p.Pro3184Phe	p.P3184F	ENST00000534358	NM_005933.3	3184	CCt/TTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435359	18435359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	121	318	0	ENST00000266497.5:c.344C>T	p.Pro115Leu	p.P115L	ENST00000266497		115	cCa/cTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18443931	18443931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	48	229	0	ENST00000266497.5:c.904C>T	p.His302Tyr	p.H302Y	ENST00000266497		302	Cat/Tat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18466919	18466919	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	61	390	0	ENST00000266497.5:c.1058A>T	p.Lys353Ile	p.K353I	ENST00000266497		353	aAa/aTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716366	18716366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	84	349	0	ENST00000266497.5:c.3713C>T	p.Ser1238Leu	p.S1238L	ENST00000266497		1238	tCa/tTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793483	18793483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	50	269	0	ENST00000266497.5:c.4180G>A	p.Glu1394Lys	p.E1394K	ENST00000266497		1394	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420471	49420471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	250	733	0	ENST00000301067.7:c.15278C>T	p.Ser5093Phe	p.S5093F	ENST00000301067	NM_003482.3	5093	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428663	49428663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	203	652	2	ENST00000301067.7:c.10287G>A	p.Met3429Ile	p.M3429I	ENST00000301067	NM_003482.3	3429	atG/atA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444816	49444816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	247	874	1	ENST00000301067.7:c.2650C>T	p.Pro884Ser	p.P884S	ENST00000301067	NM_003482.3	884	Cct/Tct																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416704	121416704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	226	810	1	ENST00000257555.6:c.133G>A	p.Asp45Asn	p.D45N	ENST00000257555		45	Gac/Aac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601274	28601275	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	190	438	0	ENST00000241453.7:c.2157_2158delinsAA	p.Glu720Lys	p.E720K	ENST00000241453	NM_004119.2	719	aaGGaa/aaAAaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28931718	28931718	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	130	424	0	ENST00000282397.4:c.2221G>C	p.Glu741Gln	p.E741Q	ENST00000282397	NM_002019.4	741	Gaa/Caa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005419	29005419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55687105		P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	68	328	0	ENST00000282397.4:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000282397	NM_002019.4	281	cGa/cAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910654	32910654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	86	363	0	ENST00000380152.3:c.2162C>T	p.Pro721Leu	p.P721L	ENST00000380152		721	cCa/cTa																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281236	49281236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	160	632	0	ENST00000282018.3:c.283G>A	p.Ala95Thr	p.A95T	ENST00000282018	NM_020377.2	95	Gct/Act																																																																														
DIS3	22894	MSKCC	GRCh37	13	73351584	73351584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	54	196	0	ENST00000377767.4:c.628C>T	p.Arg210Cys	p.R210C	ENST00000377767	NM_014953.3	210	Cgt/Tgt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504536	103504536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	82	302	0	ENST00000355739.4:c.157C>T	p.Pro53Ser	p.P53S	ENST00000355739	NM_000123.3	53	Cct/Tct																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434553	110434553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	143	324	0	ENST00000375856.3:c.3848C>T	p.Ser1283Phe	p.S1283F	ENST00000375856	NM_003749.2	1283	tCc/tTc																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023067	33023067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	87	500	0	ENST00000300177.4:c.176G>A	p.Gly59Glu	p.G59E	ENST00000300177	NM_001191322.1	59	gGg/gAg																																																																														
MGA	23269	MSKCC	GRCh37	15	42042574	42042574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	99	432	0	ENST00000219905.7:c.6769C>T	p.Pro2257Ser	p.P2257S	ENST00000219905	NM_001164273.1	2257	Cct/Tct																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476403	88476403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	106	459	1	ENST00000360948.2:c.1729C>T	p.Pro577Ser	p.P577S	ENST00000360948	NM_001012338.2	577	Ccc/Tcc																																																																														
BLM	641	MSKCC	GRCh37	15	91295133	91295133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	64	319	0	ENST00000355112.3:c.916G>A	p.Glu306Lys	p.E306K	ENST00000355112	NM_000057.2	306	Gaa/Aaa																																																																														
BLM	641	MSKCC	GRCh37	15	91306215	91306215	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	269	306	0	ENST00000355112.3:c.1902A>T	p.Leu634Phe	p.L634F	ENST00000355112	NM_000057.2	634	ttA/ttT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777996	3777996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	271	928	1	ENST00000262367.5:c.7052C>T	p.Ser2351Phe	p.S2351F	ENST00000262367	NM_004380.2	2351	tCt/tTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820627	3820627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	364	809	0	ENST00000262367.5:c.2824C>A	p.Pro942Thr	p.P942T	ENST00000262367	NM_004380.2	942	Cct/Act																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858267	9858267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	158	463	0	ENST00000330684.3:c.3134C>T	p.Ser1045Phe	p.S1045F	ENST00000330684	NM_001134407.1	1045	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858547	9858547	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	118	527	0	ENST00000330684.3:c.2854A>T	p.Lys952Ter	p.K952*	ENST00000330684	NM_001134407.1	952	Aaa/Taa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923407	9923407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	118	534	0	ENST00000330684.3:c.1880G>A	p.Ser627Asn	p.S627N	ENST00000330684	NM_001134407.1	627	aGc/aAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032197	10032197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	409	632	0	ENST00000330684.3:c.626C>T	p.Ser209Phe	p.S209F	ENST00000330684	NM_001134407.1	209	tCc/tTc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041840	14041840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	98	396	0	ENST00000311895.7:c.2387C>T	p.Pro796Leu	p.P796L	ENST00000311895	NM_005236.2	796	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831515	72831515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	335	603	0	ENST00000268489.5:c.5066G>A	p.Gly1689Glu	p.G1689E	ENST00000268489	NM_006885.3	1689	gGg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	512	791	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990712	7990712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	172	652	2	ENST00000319144.4:c.49G>A	p.Gly17Arg	p.G17R	ENST00000319144	NM_001139.2	17	Gga/Aga																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	91	391	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866081	37866081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113619125		P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	190	740	1	ENST00000269571.5:c.590C>T	p.Pro197Leu	p.P197L	ENST00000269571		197	cCg/cTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243037	41243037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	137	428	0	ENST00000357654.3:c.4109C>T	p.Ser1370Phe	p.S1370F	ENST00000357654	NM_007294.3	1370	tCt/tTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56432308	56432308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	171	507	0	ENST00000407977.2:c.2348T>C	p.Val783Ala	p.V783A	ENST00000407977		783	gTg/gCg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435416	56435416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	220	809	0	ENST00000407977.2:c.1721G>A	p.Gly574Glu	p.G574E	ENST00000407977		574	gGa/gAa																																																																														
INSR	3643	MSKCC	GRCh37	19	7132235	7132235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	215	738	0	ENST00000302850.5:c.2776C>T	p.Arg926Trp	p.R926W	ENST00000302850	NM_000208.2	926	Cgg/Tgg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246513	10246513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1241	214	827	0	ENST00000340748.4:c.4624C>T	p.Pro1542Ser	p.P1542S	ENST00000340748		1542	Cca/Tca																																																																														
CARM1	10498	MSKCC	GRCh37	19	11024650	11024650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	179	578	0	ENST00000327064.4:c.767C>T	p.Ser256Leu	p.S256L	ENST00000327064	NM_199141.1	256	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094995	11094996	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	582	937	1	ENST00000344626.4:c.168_169delinsTA	p.Pro57Thr	p.P57T	ENST00000344626	NM_003072.3	56	atCCcc/atTAcc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097134	11097134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	229	772	1	ENST00000344626.4:c.625C>T	p.Pro209Ser	p.P209S	ENST00000344626	NM_003072.3	209	Ccg/Tcg																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14629110	14629110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	275	387	0	ENST00000254322.2:c.52G>A	p.Glu18Lys	p.E18K	ENST00000254322	NM_006145.1	18	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272086	15272086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	159	693	0	ENST00000263388.2:c.6353C>T	p.Pro2118Leu	p.P2118L	ENST00000263388	NM_000435.2	2118	cCt/cTt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349630	15349630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	203	822	0	ENST00000263377.2:c.3944C>T	p.Ser1315Phe	p.S1315F	ENST00000263377	NM_058243.2	1315	tCc/tTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355317	15355317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	96	273	0	ENST00000263377.2:c.2306C>A	p.Pro769His	p.P769H	ENST00000263377	NM_058243.2	769	cCt/cAt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17937688	17937688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	376	615	0	ENST00000458235.1:c.3239C>T	p.Pro1080Leu	p.P1080L	ENST00000458235	NM_000215.3	1080	cCt/cTt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950318	17950318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1469	268	761	1	ENST00000458235.1:c.1409C>T	p.Thr470Ile	p.T470I	ENST00000458235	NM_000215.3	470	aCc/aTc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953135	17953135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	291	485	0	ENST00000458235.1:c.851G>A	p.Gly284Glu	p.G284E	ENST00000458235	NM_000215.3	284	gGa/gAa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965826	18965827	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	186	517	0	ENST00000262803.5:c.1404_1405delinsTT	p.Pro469Ser	p.P469S	ENST00000262803	NM_002911.3	468	ctCCcc/ctTTcc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257451	19257451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1918	258	975	0	ENST00000162023.5:c.682C>T	p.Leu228Phe	p.L228F	ENST00000162023		228	Ctc/Ttc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211012	36211012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	264	798	0	ENST00000222270.7:c.763C>T	p.Pro255Ser	p.P255S	ENST00000222270	NM_014727.1	255	Cct/Tct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211793	36211793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	222	832	0	ENST00000222270.7:c.1544C>T	p.Pro515Leu	p.P515L	ENST00000222270	NM_014727.1	515	cCc/cTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223203	36223203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	305	1037	0	ENST00000222270.7:c.5753C>T	p.Pro1918Leu	p.P1918L	ENST00000222270	NM_014727.1	1918	cCt/cTt																																																																														
AXL	558	MSKCC	GRCh37	19	41727151	41727151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	347	524	0	ENST00000301178.4:c.409G>A	p.Gly137Ser	p.G137S	ENST00000301178	NM_021913.4	137	Ggc/Agc																																																																														
AXL	558	MSKCC	GRCh37	19	41744456	41744456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	232	834	1	ENST00000301178.4:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000301178	NM_021913.4	359	cCc/cTc																																																																														
AXL	558	MSKCC	GRCh37	19	41758807	41758807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	223	713	0	ENST00000301178.4:c.1861C>T	p.Pro621Ser	p.P621S	ENST00000301178	NM_021913.4	621	Cct/Tct																																																																														
CIC	23152	MSKCC	GRCh37	19	42791248	42791248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	215	801	0	ENST00000575354.2:c.308C>T	p.Pro103Leu	p.P103L	ENST00000575354	NM_015125.3	103	cCt/cTt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52723098	52723098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	162	549	0	ENST00000322088.6:c.1283C>T	p.Pro428Leu	p.P428L	ENST00000322088	NM_014225.5	428	cCc/cTc																																																																														
ALK	238	MSKCC	GRCh37	2	29498327	29498327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	164	570	0	ENST00000389048.3:c.1853G>A	p.Gly618Glu	p.G618E	ENST00000389048	NM_004304.4	618	gGa/gAa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39234211	39234211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	129	477	0	ENST00000402219.2:c.2634G>A	p.Met878Ile	p.M878I	ENST00000402219	NM_005633.3	878	atG/atA																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47607029	47607029	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	203	446	0	ENST00000263735.4:c.779C>A	p.Ser260Ter	p.S260*	ENST00000263735	NM_002354.2	260	tCa/tAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61708342	61708342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	121	282	0	ENST00000401558.2:c.3047G>A	p.Arg1016Lys	p.R1016K	ENST00000401558	NM_003400.3	1016	aGa/aAa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99156105	99156108	+	frameshift_variant	Frame_Shift_Del	DEL	TCGT	TCGT	ATG			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	139	604	1	ENST00000074304.5:c.785_788delinsATG	p.Phe262TyrfsTer6	p.F262Yfs*6	ENST00000074304	NM_001134224.1	262	tTCGTg/tATGg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728659	190728659	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	46	321	0	ENST00000441310.2:c.2047C>T	p.Gln683Ter	p.Q683*	ENST00000441310	NM_000534.4	683	Cag/Tag																																																																														
CASP8	841	MSKCC	GRCh37	2	202149790	202149791	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	77	576	0	ENST00000358485.4:c.1231_1232delinsTT	p.Pro411Phe	p.P411F	ENST00000358485	NM_001080125.1	411	CCc/TTc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209116179	209116179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	172	327	0	ENST00000345146.2:c.97C>T	p.Pro33Ser	p.P33S	ENST00000345146	NM_005896.2	33	Ccc/Tcc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248401	212248401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	77	285	0	ENST00000342788.4:c.3866C>T	p.Ser1289Phe	p.S1289F	ENST00000342788	NM_005235.2	1289	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248774	212248774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	59	221	0	ENST00000342788.4:c.3493C>T	p.Pro1165Ser	p.P1165S	ENST00000342788	NM_005235.2	1165	Cca/Tca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812293	212812293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	36	289	0	ENST00000342788.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000342788	NM_005235.2	95	Cgt/Tgt																																																																														
BARD1	580	MSKCC	GRCh37	2	215617193	215617193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	69	281	0	ENST00000260947.4:c.1655C>T	p.Ser552Phe	p.S552F	ENST00000260947	NM_000465.2	552	tCc/tTc																																																																														
INHA	3623	MSKCC	GRCh37	2	220440058	220440059	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	329	857	1	ENST00000243786.2:c.911_912delinsTA	p.Ser304Leu	p.S304L	ENST00000243786	NM_002191.3	304	tCC/tTA																																																																														
PAK7	0	MSKCC	GRCh37	20	9520219	9520219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	267	451	0	ENST00000353224.5:c.2050G>A	p.Glu684Lys	p.E684K	ENST00000353224	NM_177990.2	684	Gag/Aag																																																																														
PAK7	0	MSKCC	GRCh37	20	9546620	9546620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	257	484	0	ENST00000353224.5:c.1402G>A	p.Glu468Lys	p.E468K	ENST00000353224	NM_177990.2	468	Gag/Aag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019434	31019434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	123	471	0	ENST00000375687.4:c.931G>A	p.Glu311Lys	p.E311K	ENST00000375687	NM_015338.5	311	Gag/Aag																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386360	31386360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	193	774	0	ENST00000328111.2:c.1585C>T	p.Pro529Ser	p.P529S	ENST00000328111	NM_006892.3	529	Ccg/Tcg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31387050	31387050	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	179	608	0	ENST00000328111.2:c.1675G>A	p.Glu559Lys	p.E559K	ENST00000328111	NM_006892.3	559	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733295	40733295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	133	470	0	ENST00000373198.4:c.3511C>T	p.Pro1171Ser	p.P1171S	ENST00000373198	NM_133170.3	1171	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739001	40739001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	301	544	0	ENST00000373198.4:c.3283G>A	p.Glu1095Lys	p.E1095K	ENST00000373198	NM_133170.3	1095	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877449	40877449	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201441123		P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	115	457	0	ENST00000373198.4:c.2247G>T	p.Gln749His	p.Q749H	ENST00000373198	NM_133170.3	749	caG/caT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306677	41306677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	181	742	0	ENST00000373198.4:c.982C>T	p.Arg328Cys	p.R328C	ENST00000373198	NM_133170.3	328	Cgc/Tgc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268774	46268774	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	196	513	1	ENST00000371998.3:c.3059T>A	p.Val1020Asp	p.V1020D	ENST00000371998		1020	gTt/gAt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164712	36164712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	240	621	1	ENST00000300305.3:c.1163C>T	p.Ser388Leu	p.S388L	ENST00000300305		388	tCg/tTg																																																																														
NF2	4771	MSKCC	GRCh37	22	30067904	30067904	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	342	643	0	ENST00000338641.4:c.1089G>C	p.Met363Ile	p.M363I	ENST00000338641	NM_000268.3	363	atG/atC																																																																														
EP300	2033	MSKCC	GRCh37	22	41564760	41564760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	164	562	1	ENST00000263253.7:c.4061C>T	p.Pro1354Leu	p.P1354L	ENST00000263253	NM_001429.3	1354	cCa/cTa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713843	30713843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	176	615	1	ENST00000359013.4:c.1243G>A	p.Asp415Asn	p.D415N	ENST00000359013	NM_001024847.2	415	Gac/Aac																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053562	37053562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	100	452	0	ENST00000231790.2:c.649C>T	p.Arg217Cys	p.R217C	ENST00000231790	NM_000249.3	217	Cgc/Tgc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37061932	37061932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	122	441	0	ENST00000231790.2:c.1016C>T	p.Ser339Phe	p.S339F	ENST00000231790	NM_000249.3	339	tCc/tTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275290	41275290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113411271		P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	138	435	0	ENST00000349496.5:c.1456C>T	p.Arg486Cys	p.R486C	ENST00000349496	NM_001904.3	486	Cgc/Tgc																																																																														
RHOA	387	MSKCC	GRCh37	3	49412938	49412938	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	429	665	1	ENST00000418115.1:c.85C>T	p.Gln29Ter	p.Q29*	ENST00000418115	NM_001664.2	29	Cag/Tag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935108	49935108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	160	611	1	ENST00000296474.3:c.1891C>T	p.Arg631Trp	p.R631W	ENST00000296474	NM_002447.2	631	Cgg/Tgg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259118	89259118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	110	344	0	ENST00000336596.2:c.262C>T	p.Pro88Ser	p.P88S	ENST00000336596	NM_005233.5	88	Ccc/Tcc																																																																														
ATR	545	MSKCC	GRCh37	3	142188303	142188303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	80	363	0	ENST00000350721.4:c.6428C>T	p.Ser2143Leu	p.S2143L	ENST00000350721	NM_001184.3	2143	tCa/tTa																																																																														
ATR	545	MSKCC	GRCh37	3	142188402	142188402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	52	272	0	ENST00000350721.4:c.6329C>T	p.Ser2110Phe	p.S2110F	ENST00000350721	NM_001184.3	2110	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612203	189612203	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	151	549	0	ENST00000264731.3:c.1955T>A	p.Phe652Tyr	p.F652Y	ENST00000264731	NM_003722.4	652	tTc/tAc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1932473	1932473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	370	641	0	ENST00000382891.5:c.1531C>T	p.Pro511Ser	p.P511S	ENST00000382891	NM_133335.3	511	Cct/Tct																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747919	41747919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	131	331	1	ENST00000226382.2:c.850C>T	p.Pro284Ser	p.P284S	ENST00000226382	NM_003924.3	284	Ccg/Tcg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55131211	55131211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	72	344	0	ENST00000257290.5:c.754G>A	p.Glu252Lys	p.E252K	ENST00000257290	NM_006206.4	252	Gaa/Aaa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138563	55138563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	127	432	0	ENST00000257290.5:c.1240C>T	p.Pro414Ser	p.P414S	ENST00000257290	NM_006206.4	414	Cct/Tct																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152054	55152054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	157	573	0	ENST00000257290.5:c.2486G>A	p.Gly829Glu	p.G829E	ENST00000257290	NM_006206.4	829	gGa/gAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161362	55161362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	138	481	0	ENST00000257290.5:c.3193G>A	p.Glu1065Lys	p.E1065K	ENST00000257290	NM_006206.4	1065	Gag/Aag																																																																														
KIT	3815	MSKCC	GRCh37	4	55597559	55597559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	77	361	0	ENST00000288135.5:c.2207C>T	p.Ala736Val	p.A736V	ENST00000288135	NM_000222.2	736	gCc/gTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55948779	55948779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	98	340	0	ENST00000263923.4:c.3686G>A	p.Arg1229Gln	p.R1229Q	ENST00000263923	NM_002253.2	1229	cGa/cAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55955109	55955109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	265	426	0	ENST00000263923.4:c.3436G>A	p.Glu1146Lys	p.E1146K	ENST00000263923	NM_002253.2	1146	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55968163	55968163	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	106	471	0	ENST00000263923.4:c.2167A>C	p.Thr723Pro	p.T723P	ENST00000263923	NM_002253.2	723	Act/Cct																																																																														
KDR	3791	MSKCC	GRCh37	4	55972013	55972013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	138	415	0	ENST00000263923.4:c.1631C>T	p.Ser544Phe	p.S544F	ENST00000263923	NM_002253.2	544	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55984888	55984888	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201719457		P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	119	437	0	ENST00000263923.4:c.241G>A	p.Asp81Asn	p.D81N	ENST00000263923	NM_002253.2	81	Gat/Aat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356101	66356101	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	61	393	0	ENST00000273854.3:c.1396C>T	p.Gln466Ter	p.Q466*	ENST00000273854	NM_004439.5	466	Caa/Taa																																																																														
TET2	54790	MSKCC	GRCh37	4	106155740	106155740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	84	359	0	ENST00000380013.4:c.641C>T	p.Ser214Phe	p.S214F	ENST00000380013	NM_001127208.2	214	tCt/tTt																																																																														
TET2	54790	MSKCC	GRCh37	4	106193847	106193847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	90	376	0	ENST00000380013.4:c.4309G>A	p.Glu1437Lys	p.E1437K	ENST00000380013	NM_001127208.2	1437	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627767	187627767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	147	474	1	ENST00000441802.2:c.3215C>T	p.Ser1072Phe	p.S1072F	ENST00000441802	NM_005245.3	1072	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295204	1295205	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	181	106	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	143	142	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295253	1295253	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	123	158	0				ENST00000310581	NM_198253.2																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31423012	31423012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	125	510	0	ENST00000344624.3:c.3301T>C	p.Ser1101Pro	p.S1101P	ENST00000344624		1101	Tct/Cct																																																																														
APC	324	MSKCC	GRCh37	5	112173885	112173885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	92	339	0	ENST00000257430.4:c.2594C>T	p.Pro865Leu	p.P865L	ENST00000257430	NM_000038.5	865	cCa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112175589	112175589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	99	329	0	ENST00000257430.4:c.4298C>T	p.Pro1433Leu	p.P1433L	ENST00000257430	NM_000038.5	1433	cCa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112176824	112176824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	79	298	0	ENST00000257430.4:c.5533C>T	p.His1845Tyr	p.H1845Y	ENST00000257430	NM_000038.5	1845	Cat/Tat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562860	176562861	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	286	535	0	ENST00000439151.2:c.756_757delinsTT	p.Leu253Phe	p.L253F	ENST00000439151	NM_022455.4	252	gcCCtt/gcTTtt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680359	30680359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	144	625	0	ENST00000376406.3:c.1360G>A	p.Asp454Asn	p.D454N	ENST00000376406	NM_014641.2	454	Gac/Aac																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	218	677	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32189064	32189064	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	161	654	0	ENST00000375023.3:c.490C>G	p.Pro164Ala	p.P164A	ENST00000375023	NM_004557.3	164	Cca/Gca																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068107	94068107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	58	182	0	ENST00000369303.4:c.855G>T	p.Lys285Asn	p.K285N	ENST00000369303	NM_004440.3	285	aaG/aaT																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552739	106552739	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	86	401	0	ENST00000369096.4:c.704A>T	p.Lys235Ile	p.K235I	ENST00000369096	NM_001198.3	235	aAa/aTa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554975	106554975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	188	516	0	ENST00000369096.4:c.2092C>T	p.His698Tyr	p.H698Y	ENST00000369096	NM_001198.3	698	Cat/Tat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631392	117631392	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	56	359	0	ENST00000368508.3:c.6286C>G	p.Arg2096Gly	p.R2096G	ENST00000368508	NM_002944.2	2096	Cgg/Ggg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678025	117678025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	62	387	0	ENST00000368508.3:c.3908G>T	p.Ser1303Ile	p.S1303I	ENST00000368508	NM_002944.2	1303	aGt/aTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706929	117706929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	98	453	0	ENST00000368508.3:c.2221C>T	p.His741Tyr	p.H741Y	ENST00000368508	NM_002944.2	741	Cac/Tac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724401	117724401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	105	559	0	ENST00000368508.3:c.478C>T	p.Pro160Ser	p.P160S	ENST00000368508	NM_002944.2	160	Ccc/Tcc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201811	152201811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	73	318	0	ENST00000206249.3:c.665C>T	p.Pro222Leu	p.P222L	ENST00000206249	NM_000125.3	222	cCa/cTa																																																																														
PARK2	0	MSKCC	GRCh37	6	162683649	162683649	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	144	546	0	ENST00000366898.1:c.320T>G	p.Leu107Arg	p.L107R	ENST00000366898	NM_004562.2	107	cTc/cGc																																																																														
PARK2	0	MSKCC	GRCh37	6	162683767	162683767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	92	486	0	ENST00000366898.1:c.202C>T	p.His68Tyr	p.H68Y	ENST00000366898	NM_004562.2	68	Cac/Tac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976862	2976862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	104	553	0	ENST00000396946.4:c.1150C>T	p.His384Tyr	p.H384Y	ENST00000396946	NM_032415.4	384	Cac/Tac																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441505	6441505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	72	248	0	ENST00000356142.4:c.352C>T	p.Pro118Ser	p.P118S	ENST00000356142	NM_018890.3	118	Cct/Tct																																																																														
RAC1	5879	MSKCC	GRCh37	7	6442026	6442027	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	46	111	0	ENST00000356142.4:c.585_586delinsTT	p.Leu196Phe	p.L196F	ENST00000356142	NM_018890.3	195	gtCCtc/gtTTtc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210029	55210029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	128	442	0	ENST00000275493.2:c.139C>T	p.His47Tyr	p.H47Y	ENST00000275493	NM_005228.3	47	Cat/Tat																																																																														
HGF	3082	MSKCC	GRCh37	7	81381541	81381541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	73	309	0	ENST00000222390.5:c.520G>A	p.Glu174Lys	p.E174K	ENST00000222390	NM_000601.4	174	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509658	106509668	+	frameshift_variant	Frame_Shift_Del	DEL	TTCGCAAGCAA	TTCGCAAGCAA	-			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	133	552	0	ENST00000359195.3:c.1654_1664del	p.Arg552GlyfsTer7	p.R552Gfs*7	ENST00000359195	NM_002649.2	551	cTTCGCAAGCAA/c																																																																														
MET	4233	MSKCC	GRCh37	7	116380017	116380017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	299	399	0	ENST00000397752.3:c.1406G>A	p.Arg469Gln	p.R469Q	ENST00000397752	NM_000245.2	469	cGa/cAa																																																																														
MET	4233	MSKCC	GRCh37	7	116411923	116411923	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34589476		P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	197	610	0	ENST00000397752.3:c.2908C>T	p.Arg970Cys	p.R970C	ENST00000397752	NM_000245.2	970	Cgc/Tgc																																																																														
MET	4233	MSKCC	GRCh37	7	116435945	116435945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	256	484	0	ENST00000397752.3:c.3940G>A	p.Glu1314Lys	p.E1314K	ENST00000397752	NM_000245.2	1314	Gaa/Aaa																																																																														
SMO	6608	MSKCC	GRCh37	7	128850945	128850945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	376	594	0	ENST00000249373.3:c.1792G>A	p.Gly598Arg	p.G598R	ENST00000249373	NM_005631.4	598	Ggg/Agg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68972963	68972963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	101	422	0	ENST00000288368.4:c.1288G>A	p.Glu430Lys	p.E430K	ENST00000288368	NM_024870.2	430	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68981327	68981328	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	66	328	0	ENST00000288368.4:c.1399_1400delinsAA	p.Gly467Lys	p.G467K	ENST00000288368	NM_024870.2	467	GGa/AAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5077454	5077454	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	55	278	0	ENST00000381652.3:c.1866T>G	p.Asn622Lys	p.N622K	ENST00000381652	NM_004972.3	622	aaT/aaG																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340386	8340386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	154	524	0	ENST00000356435.5:c.5210C>T	p.Ser1737Phe	p.S1737F	ENST00000356435		1737	tCc/tTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499838	8499838	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	126	393	0	ENST00000356435.5:c.2131C>T	p.Pro711Ser	p.P711S	ENST00000356435		711	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521454	8521454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	145	574	0	ENST00000356435.5:c.784T>G	p.Ser262Ala	p.S262A	ENST00000356435		262	Tca/Gca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	198	359	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	198	359	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209585	98209585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	180	770	0	ENST00000331920.6:c.3953C>T	p.Pro1318Leu	p.P1318L	ENST00000331920	NM_000264.3	1318	cCg/cTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760378	133760378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	78	660	0	ENST00000318560.5:c.2701C>T	p.Pro901Ser	p.P901S	ENST00000318560	NM_005157.4	901	Ccc/Tcc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781361	135781361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	90	717	0	ENST00000298552.3:c.1604C>T	p.Pro535Leu	p.P535L	ENST00000298552	NM_001162426.1	535	cCt/cTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76814253	76814253	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	78	191	0	ENST00000373344.5:c.6391C>T	p.Arg2131Ter	p.R2131*	ENST00000373344	NM_000489.3	2131	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76854907	76854907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	123	239	0	ENST00000373344.5:c.5929C>T	p.Pro1977Ser	p.P1977S	ENST00000373344	NM_000489.3	1977	Cct/Tct																																																																														
ATRX	546	MSKCC	GRCh37	X	76888843	76888843	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	207	206	0	ENST00000373344.5:c.4986del	p.Gln1663ArgfsTer17	p.Q1663Rfs*17	ENST00000373344	NM_000489.3	1662	ccT/cc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163405	47163405	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021937-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			339	242	179	0	ENST00000409792.3:c.2721delT	p.Leu908TrpfsTer5	p.L908Wfs*5	ENST00000409792	NM_014159.6	907	gtT/gt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	806	525	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	289	624	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			700	152	689	0	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29552152	29552152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	142	277	0	ENST00000358273.4:c.1885G>A	p.Gly629Arg	p.G629R	ENST00000358273	NM_001042492.2	629	Ggg/Agg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589591	67589592	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATA			P-0034062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	236	252	0	ENST00000274335.5:c.1356_1358dup	p.Asn453dup	p.N453dup	ENST00000274335		453	tat/tATAat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0045810-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	59	426	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045810-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			948	128	746	0	ENST00000269305.4:c.151del	p.Glu51AsnfsTer72	p.E51Nfs*72	ENST00000269305	NM_001126112.2	51	Gaa/aa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779860	3779860	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045810-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			958	120	736	0	ENST00000262367.5:c.5188A>T	p.Ile1730Phe	p.I1730F	ENST00000262367	NM_004380.2	1730	Atc/Ttc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	79	350	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	20	287	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	138	299	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	184	783	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132875	64132875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	228	953	0	ENST00000334205.4:c.1009C>T	p.Arg337Trp	p.R337W	ENST00000334205	NM_003942.2	337	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437575	56437575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	170	623	0	ENST00000407977.2:c.887G>A	p.Arg296His	p.R296H	ENST00000407977		296	cGt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55561764	55561764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	94	371	0	ENST00000288135.5:c.154G>A	p.Asp52Asn	p.D52N	ENST00000288135	NM_000222.2	52	Gac/Aac																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	120	745	12	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
MYC	4609	MSKCC	GRCh37	8	128750945	128750945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	101	545	0	ENST00000377970.2:c.482C>T	p.Ser161Leu	p.S161L	ENST00000377970	NM_002467.4	161	tCa/tTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681119	117681120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs748436511		P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	87	440	0	ENST00000368508.3:c.3500dup	p.Leu1167PhefsTer26	p.L1167Ffs*26	ENST00000368508	NM_002944.2	1167	tta/ttTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341317	89341317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	75	327	0	ENST00000301030.4:c.7618C>T	p.Arg2540Trp	p.R2540W	ENST00000301030	NM_001256183.1	2540	Cgg/Tgg																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	66	255	0	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	174	1058	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	39	380	0	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877347	28877347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	151	468	0	ENST00000282397.4:c.3974del	p.Pro1325GlnfsTer17	p.P1325Qfs*17	ENST00000282397	NM_002019.4	1325	cCa/ca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	200	553	4	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048196	180048196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	214	949	0	ENST00000261937.6:c.2077G>A	p.Asp693Asn	p.D693N	ENST00000261937	NM_182925.4	693	Gac/Aac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216184	36216184	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	164	806	3	ENST00000222270.7:c.3596del	p.Gly1199AlafsTer156	p.G1199Afs*156	ENST00000222270	NM_014727.1	1198	Ggg/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440951	56440951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	154	677	2	ENST00000407977.2:c.386C>T	p.Ala129Val	p.A129V	ENST00000407977		129	gCg/gTg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738482	145738482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	104	941	0	ENST00000428558.2:c.2503G>A	p.Asp835Asn	p.D835N	ENST00000428558	NM_004260.3	835	Gac/Aac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71936058	71936058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	10	33	0	ENST00000298229.2:c.35del	p.Gly12AlafsTer15	p.G12Afs*15	ENST00000298229	NM_001567.3	10	ccG/cc																																																																														
B2M	567	MSKCC	GRCh37	15	45007741	45007744	+	frameshift_variant	Frame_Shift_Del	DEL	GAGA	GAGA	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	159	348	0	ENST00000558401.1:c.192_195del	p.Arg65LeufsTer37	p.R65Lfs*37	ENST00000558401	NM_004048.2	63	gGAGAg/gg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554218	63554218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	149	594	0	ENST00000307078.5:c.521C>T	p.Ala174Val	p.A174V	ENST00000307078	NM_004655.3	174	gCg/gTg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78933909	78933909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	165	796	1	ENST00000306801.3:c.3509C>T	p.Thr1170Met	p.T1170M	ENST00000306801	NM_020761.2	1170	aCg/aTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939496	76939496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	124	558	0	ENST00000373344.5:c.1252C>T	p.Arg418Ter	p.R418*	ENST00000373344	NM_000489.3	418	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437530	56437531	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	196	662	0	ENST00000407977.2:c.931dup	p.Leu311ProfsTer132	p.L311Pfs*132	ENST00000407977		311	ctc/cCtc																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39325173	39325178	+	inframe_deletion	In_Frame_Del	DEL	CCTGCC	CCTGCC	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	70	745	0	ENST00000373001.3:c.141_146del	p.Ala48_Gly49del	p.A48_G49del	ENST00000373001	NM_022157.3	47	ggGGCAGGc/ggc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625284	69625284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	205	984	2	ENST00000334134.2:c.509G>A	p.Arg170His	p.R170H	ENST00000334134	NM_005247.2	170	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434903	49434903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	152	911	0	ENST00000301067.7:c.6650G>A	p.Arg2217His	p.R2217H	ENST00000301067	NM_003482.3	2217	cGt/cAt																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869504	102869504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	143	492	0	ENST00000307046.8:c.137C>T	p.Ala46Val	p.A46V	ENST00000307046	NM_001111285.1	46	gCc/gTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28901621	28901621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	66	354	0	ENST00000282397.4:c.2774G>A	p.Arg925His	p.R925H	ENST00000282397	NM_002019.4	925	cGt/cAt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483923	88483923	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	323	711	0	ENST00000360948.2:c.1647T>A	p.Phe549Leu	p.F549L	ENST00000360948	NM_001012338.2	549	ttT/ttA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900825	3900825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	137	623	0	ENST00000262367.5:c.271G>A	p.Ala91Thr	p.A91T	ENST00000262367	NM_004380.2	91	Gcc/Acc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78820312	78820312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	53	826	0	ENST00000306801.3:c.1252G>A	p.Val418Met	p.V418M	ENST00000306801	NM_020761.2	418	Gtg/Atg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272291	15272291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	232	929	0	ENST00000263388.2:c.6148C>A	p.Leu2050Ile	p.L2050I	ENST00000263388	NM_000435.2	2050	Ctc/Atc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945416	17945416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	162	705	1	ENST00000458235.1:c.2314G>A	p.Ala772Thr	p.A772T	ENST00000458235	NM_000215.3	772	Gcc/Acc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955088	17955088	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	244	938	1	ENST00000458235.1:c.139del	p.Asp47ThrfsTer100	p.D47Tfs*100	ENST00000458235	NM_000215.3	47	Gac/ac																																																																														
CIC	23152	MSKCC	GRCh37	19	42794926	42794926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	176	879	1	ENST00000575354.2:c.2006C>A	p.Ala669Asp	p.A669D	ENST00000575354	NM_015125.3	669	gCc/gAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803148	1803148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	186	1027	0	ENST00000260795.2:c.500C>T	p.Pro167Leu	p.P167L	ENST00000260795		167	cCg/cTg																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749467	41749467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	137	555	0	ENST00000226382.2:c.328C>T	p.Leu110Phe	p.L110F	ENST00000226382	NM_003924.3	110	Ctc/Ttc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593691	55593691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	103	414	0	ENST00000288135.5:c.1757G>T	p.Arg586Ile	p.R586I	ENST00000288135	NM_000222.2	586	aGa/aTa																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020958	26020973	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGACCTGCGTTTCC	ACAGACCTGCGTTTCC	-			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	91	504	0	ENST00000357647.3:c.242_257del	p.Thr81ArgfsTer5	p.T81Rfs*5	ENST00000357647	NM_003529.2	81	ACAGACCTGCGTTTCCag/ag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450355	50450355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	165	625	0	ENST00000331340.3:c.539A>G	p.Tyr180Cys	p.Y180C	ENST00000331340	NM_006060.4	180	tAc/tGc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465542	8465542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	128	512	0	ENST00000356435.5:c.3638G>T	p.Gly1213Val	p.G1213V	ENST00000356435		1213	gGa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	196	451	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	493	512	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	268	478	0	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55561861	55561861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201872586		P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	146	204	0	ENST00000288135.5:c.251C>T	p.Thr84Met	p.T84M	ENST00000288135	NM_000222.2	84	aCg/aTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903718	114903718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	213	355	1	ENST00000543371.1:c.722C>T	p.Pro241Leu	p.P241L	ENST00000543371	NM_001198531.1	241	cCg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944545	40944545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200852571		P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	184	290	0	ENST00000373198.4:c.1957C>T	p.Arg653Trp	p.R653W	ENST00000373198	NM_133170.3	653	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112128209	112128212	+	frameshift_variant	Frame_Shift_Del	DEL	CAAG	CAAG	-			P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	90	227	0	ENST00000257430.4:c.715_718del	p.Ala239GlnfsTer53	p.A239Qfs*53	ENST00000257430	NM_000038.5	238	CAAGca/ca																																																																														
MED12	9968	MSKCC	GRCh37	X	70342066	70342066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	156	191	0	ENST00000374080.3:c.1118G>T	p.Cys373Phe	p.C373F	ENST00000374080		373	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	76	385	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643566	38643578	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAATGTTAGGG	GAAAATGTTAGGG	-			P-0046535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	49	323	0	ENST00000299084.4:c.1044_1056del	p.Gly350MetfsTer52	p.G350Mfs*52	ENST00000299084	NM_152594.2	346	GAAAATGTTAGGGga/ga																																																																														
YAP1	10413	MSKCC	GRCh37	11	102033258	102033265	+	frameshift_variant	Frame_Shift_Del	DEL	CCACCAGT	CCACCAGT	-			P-0046535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	42	365	0	ENST00000282441.5:c.652_659del	p.Pro218AlafsTer14	p.P218Afs*14	ENST00000282441	NM_001130145.2	215	cCCACCAGT/c																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99808295	99808295	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	29	214	1	ENST00000280892.6:c.394C>T	p.Arg132Ter	p.R132*	ENST00000280892	NM_001130678.1	132	Cga/Tga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830877	3830877	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	74	308	0	ENST00000262367.5:c.1679C>T	p.Pro560Leu	p.P560L	ENST00000262367	NM_004380.2	560	cCa/cTa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25994388	25994388	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	49	217	0	ENST00000435504.4:c.425C>A	p.Ser142Ter	p.S142*	ENST00000435504		142	tCa/tAa																																																																														
NF2	4771	MSKCC	GRCh37	22	30067841	30067841	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	66	285	0	ENST00000338641.4:c.1026del	p.Lys343SerfsTer3	p.K343Sfs*3	ENST00000338641	NM_000268.3	342	gaG/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	410	397	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	324	438	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249393	153249393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	1247	302	0	ENST00000281708.4:c.1385C>T	p.Ser462Phe	p.S462F	ENST00000281708	NM_033632.3	462	tCc/tTc																																																																														
ATM	472	MSKCC	GRCh37	11	108203626	108203626	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0046541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	147	143	0	ENST00000278616.4:c.7926A>C	p.Arg2642Ser	p.R2642S	ENST00000278616	NM_000051.3	2642	agA/agC																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110897	8110897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	432	422	0	ENST00000585124.1:c.198C>A	p.Asp66Glu	p.D66E	ENST00000585124	NM_004217.3	66	gaC/gaA																																																																														
BCL6	604	MSKCC	GRCh37	3	187443405	187443418	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TAGGGTTTCTCACC	TAGGGTTTCTCACC	-			P-0046541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	162	215	0	ENST00000232014.4:c.1709-1_1721del		p.X570_splice	ENST00000232014	NM_001130845.1	570																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56486845	56486845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	68	240	0	ENST00000267101.3:c.1259G>C	p.Gly420Ala	p.G420A	ENST00000267101	NM_001982.3	420	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	74	427	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	148	361	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120497756	120497756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	73	348	0	ENST00000256646.2:c.2126C>G	p.Pro709Arg	p.P709R	ENST00000256646	NM_024408.3	709	cCc/cGc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40871220	40871220	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	60	250	0	ENST00000428826.2:c.670A>T	p.Lys224Ter	p.K224*	ENST00000428826		224	Aaa/Taa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120773	94120773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	62	320	0	ENST00000369303.4:c.278G>A	p.Gly93Asp	p.G93D	ENST00000369303	NM_004440.3	93	gGc/gAc																																																																														
TEK	7010	MSKCC	GRCh37	9	27185502	27185502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	69	280	0	ENST00000380036.4:c.1202C>A	p.Thr401Lys	p.T401K	ENST00000380036	NM_000459.3	401	aCg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	242	438	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	156	281	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089721	27089721	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	129	413	1	ENST00000324856.7:c.2677A>T	p.Lys893Ter	p.K893*	ENST00000324856	NM_006015.4	893	Aaa/Taa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243777011	243777011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	33	250	0	ENST00000263826.5:c.658C>T	p.Arg220Cys	p.R220C	ENST00000263826	NM_005465.4	220	Cgt/Tgt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912200	114912200	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	172	313	0	ENST00000543371.1:c.1269+1G>T		p.X423_splice	ENST00000543371	NM_001198531.1	423																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103528080	103528080	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	37	258	1	ENST00000355739.4:c.3388C>T	p.Gln1130Ter	p.Q1130*	ENST00000355739	NM_000123.3	1130	Cag/Tag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181782	56181782	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	80	172	0	ENST00000399503.3:c.4006A>C	p.Ser1336Arg	p.S1336R	ENST00000399503	NM_005921.1	1336	Agt/Cgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8436653	8436653	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	38	304	0	ENST00000356435.5:c.4025T>A	p.Leu1342His	p.L1342H	ENST00000356435		1342	cTt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0046545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	132	220	3	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	67	209	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032093	10032093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	106	386	0	ENST00000330684.3:c.730C>T	p.Arg244Cys	p.R244C	ENST00000330684	NM_001134407.1	244	Cgc/Tgc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655479	67655479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	69	302	0	ENST00000264010.4:c.1342C>T	p.Arg448Ter	p.R448*	ENST00000264010	NM_006565.3	448	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105913	27105913	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	109	325	0	ENST00000324856.7:c.5524del	p.Leu1842CysfsTer41	p.L1842Cfs*41	ENST00000324856	NM_006015.4	1842	Ctg/tg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107098	27107098	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	127	387	0	ENST00000324856.7:c.6709del	p.Ala2237ArgfsTer30	p.A2237Rfs*30	ENST00000324856	NM_006015.4	2237	Gcg/cg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469814	157469818	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGG	CCAGG	-			P-0046545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	119	531	0	ENST00000346085.5:c.2608_2612del	p.Pro870AlafsTer70	p.P870Afs*70	ENST00000346085	NM_020732.3	870	CCAGGg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	31	725	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604717	48604717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	58	441	0	ENST00000342988.3:c.1541del	p.Pro514GlnfsTer23	p.P514Qfs*23	ENST00000342988	NM_005359.5	513	taC/ta																																																																														
MGA	23269	MSKCC	GRCh37	15	42034984	42034984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	23	617	0	ENST00000219905.7:c.4826C>T	p.Thr1609Ile	p.T1609I	ENST00000219905	NM_001164273.1	1609	aCt/aTt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46596966	46596966	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0046561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	17	406	0	ENST00000263734.3:c.781del	p.Ile261SerfsTer4	p.I261Sfs*4	ENST00000263734	NM_001430.4	260	agA/ag																																																																														
TCF3	6929	MSKCC	GRCh37	19	1625652	1625652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	114	851	1	ENST00000344749.5:c.422C>T	p.Ser141Leu	p.S141L	ENST00000344749	NM_001136139.2	141	tCg/tTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10260325	10260325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	87	562	1	ENST00000340748.4:c.2342C>T	p.Ala781Val	p.A781V	ENST00000340748		781	gCg/gTg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18963795	18963795	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0046564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	39	333	0	ENST00000262803.5:c.973-1G>C		p.X325_splice	ENST00000262803	NM_002911.3	325																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	77	355	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021785	71021785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs112795301		P-0046568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	71	320	0	ENST00000318789.4:c.1573C>T	p.Arg525Ter	p.R525*	ENST00000318789	NM_032682.5	525	Cga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	29416659	29416659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	105	595	1	ENST00000389048.3:c.4294C>T	p.Arg1432Trp	p.R1432W	ENST00000389048	NM_004304.4	1432	Cgg/Tgg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480460	89480460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	70	331	0	ENST00000336596.2:c.2297G>A	p.Gly766Glu	p.G766E	ENST00000336596	NM_005233.5	766	gGa/gAa																																																																														
MITF	4286	MSKCC	GRCh37	3	70014154	70014154	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	122	571	0	ENST00000352241.4:c.1318A>G	p.Thr440Ala	p.T440A	ENST00000352241	NM_198159.2	440	Aca/Gca																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591014	67591015	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	35	204	0	ENST00000274335.5:c.1608dup	p.Glu537Ter	p.E537*	ENST00000274335		536	agt/agTt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591134	67591135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0046568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	35	280	0	ENST00000274335.5:c.1732_1733dup	p.Asp578GlufsTer5	p.D578Efs*5	ENST00000274335		576	acg/acGAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046317	69046317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	21	541	0	ENST00000288368.4:c.3790G>T	p.Asp1264Tyr	p.D1264Y	ENST00000288368	NM_024870.2	1264	Gac/Tac																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542213	141542213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	144	643	0	ENST00000220592.5:c.2510G>A	p.Arg837Gln	p.R837Q	ENST00000220592	NM_012154.3	837	cGa/cAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	29	303	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500882	8500882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191877533		P-0046569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	132	458	0	ENST00000356435.5:c.2000C>T	p.Ser667Leu	p.S667L	ENST00000356435		667	tCg/tTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921522	178921523	+	inframe_insertion	In_Frame_Ins	INS	-	-	AATAAAAATTCTTTGTGCAACCTACGTGAATGT			P-0046569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	13	290	0	ENST00000263967.3:c.1007_1039dup	p.Ile336_Val346dup	p.I336_V346dup	ENST00000263967	NM_006218.2	336	aga/agAATAAAAATTCTTTGTGCAACCTACGTGAATGTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	183	382	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	183	382	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	165	400	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	173	675	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	183	382	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281320	49281320	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	188	747	0	ENST00000282018.3:c.367T>C	p.Tyr123His	p.Y123H	ENST00000282018	NM_020377.2	123	Tac/Cac																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652209	36652210	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	175	804	0	ENST00000244741.5:c.332dup	p.Asp112GlyfsTer17	p.D112Gfs*17	ENST00000244741	NM_000389.4	111	gtg/gTtg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933622	39933622	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200141801		P-0046570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	118	688	0	ENST00000378444.4:c.977C>T	p.Pro326Leu	p.P326L	ENST00000378444	NM_001123385.1	326	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	105	434	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	271	868	4	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	66	259	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174399	11174400	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0046571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	124	624	0	ENST00000361445.4:c.7273_7275dup	p.Pro2425dup	p.P2425dup	ENST00000361445	NM_004958.3	2425	-/CCC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	176	661	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967215	134967215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	55	540	0	ENST00000398015.3:c.2554G>T	p.Ala852Ser	p.A852S	ENST00000398015	NM_004441.4	852	Gct/Tct																																																																														
KIT	3815	MSKCC	GRCh37	4	55564590	55564590	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	51	604	0	ENST00000288135.5:c.478T>G	p.Leu160Val	p.L160V	ENST00000288135	NM_000222.2	160	Ttg/Gtg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993623	72993623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	76	640	1	ENST00000268489.5:c.422C>T	p.Ala141Val	p.A141V	ENST00000268489	NM_006885.3	141	gCg/gTg																																																																														
BARD1	580	MSKCC	GRCh37	2	215645967	215645967	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	35	540	0	ENST00000260947.4:c.631T>G	p.Leu211Val	p.L211V	ENST00000260947	NM_000465.2	211	Tta/Gta																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	86	536	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	50	504	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	76	378	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	26	344	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0046597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	38	462	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	21	403	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11181367	11181367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	31	675	0	ENST00000361445.4:c.6869C>T	p.Ala2290Val	p.A2290V	ENST00000361445	NM_004958.3	2290	gCc/gTc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484575	57484576	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GC	GC	TT			P-0046599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	58	558	1	ENST00000371085.3:c.660-1_660delinsTT		p.X220_splice	ENST00000371085	NM_000516.4	220																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	125	290	0				ENST00000310581	NM_198253.2																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	295	657	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	252	647	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266107	41266107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	201	407	0	ENST00000349496.5:c.104T>G	p.Ile35Ser	p.I35S	ENST00000349496	NM_001904.3	35	aTc/aGc																																																																														
NF2	4771	MSKCC	GRCh37	22	30070880	30070880	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	247	674	1	ENST00000338641.4:c.1396C>T	p.Arg466Ter	p.R466*	ENST00000338641	NM_000268.3	466	Cga/Tga																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465604	99465604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	261	564	0	ENST00000268035.6:c.2429C>G	p.Ala810Gly	p.A810G	ENST00000268035	NM_000875.3	810	gCt/gGt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961912	15961916	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACTT	TACTT	-			P-0046601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	137	328	0	ENST00000268712.3:c.5882-3_5883del		p.X1961_splice	ENST00000268712	NM_006311.3	1961																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50367252	50367252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	167	457	0	ENST00000331340.3:c.59T>C	p.Val20Ala	p.V20A	ENST00000331340	NM_006060.4	20	gTa/gCa																																																																														
SYK	6850	MSKCC	GRCh37	9	93650157	93650157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	232	546	0	ENST00000375746.1:c.1708C>A	p.Gln570Lys	p.Q570K	ENST00000375746	NM_001174167.1	570	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	36	606	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	325	726	1	ENST00000269305.4:c.737T>C	p.Met246Thr	p.M246T	ENST00000269305	NM_001126112.2	246	aTg/aCg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436296	110436297	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGG	rs34412495		P-0046578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	22	124	3	ENST00000375856.3:c.2102_2104dup	p.Ala701dup	p.A701dup	ENST00000375856	NM_003749.2	701	gtg/gCCGtg																																																																														
MGA	23269	MSKCC	GRCh37	15	42035075	42035075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	246	694	0	ENST00000219905.7:c.4918del	p.Val1640SerfsTer10	p.V1640Sfs*10	ENST00000219905	NM_001164273.1	1639	gaG/ga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	73	200	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	238	537	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg																																																																														
BTK	695	MSKCC	GRCh37	X	100608277	100608277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	139	534	0	ENST00000308731.7:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000308731	NM_000061.2	605	Gag/Aag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207606	2207606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	125	493	0	ENST00000398665.3:c.890C>T	p.Ser297Leu	p.S297L	ENST00000398665	NM_032482.2	297	tCg/tTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965476	68965476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	84	419	0	ENST00000288368.4:c.1088G>A	p.Arg363Gln	p.R363Q	ENST00000288368	NM_024870.2	363	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992171	72992171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	109	502	0	ENST00000268489.5:c.1874C>T	p.Ser625Phe	p.S625F	ENST00000268489	NM_006885.3	625	tCc/tTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482585	56482585	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	124	474	0	ENST00000267101.3:c.1042A>G	p.Ile348Val	p.I348V	ENST00000267101	NM_001982.3	348	Att/Gtt																																																																														
RB1	5925	MSKCC	GRCh37	13	48916780	48916784	+	frameshift_variant	Frame_Shift_Del	DEL	TTTAT	TTTAT	-			P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	71	353	0	ENST00000267163.4:c.311_315del	p.Phe104CysfsTer4	p.F104Cfs*4	ENST00000267163	NM_000321.2	104	TTTATt/t																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884160	37884160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1453	135	609	0	ENST00000269571.5:c.3631C>T	p.Pro1211Ser	p.P1211S	ENST00000269571		1211	Cct/Tct																																																																														
EP300	2033	MSKCC	GRCh37	22	41546084	41546084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	198	452	0	ENST00000263253.7:c.2699C>T	p.Ser900Leu	p.S900L	ENST00000263253	NM_001429.3	900	tCa/tTa																																																																														
ATR	545	MSKCC	GRCh37	3	142274961	142274961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	82	300	1	ENST00000350721.4:c.2099C>T	p.Ser700Phe	p.S700F	ENST00000350721	NM_001184.3	700	tCt/tTt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55143573	55143573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	67	265	0	ENST00000257290.5:c.1805G>A	p.Gly602Glu	p.G602E	ENST00000257290	NM_006206.4	602	gGa/gAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637612	176637612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	131	432	0	ENST00000439151.2:c.2212C>G	p.Leu738Val	p.L738V	ENST00000439151	NM_022455.4	738	Ctt/Gtt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500904	8500904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	162	398	0	ENST00000356435.5:c.1978C>T	p.His660Tyr	p.H660Y	ENST00000356435		660	Cac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	125	234	0				ENST00000310581	NM_198253.2																																																																																
BRCA2	675	MSKCC	GRCh37	13	32893318	32893318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	55	352	1	ENST00000380152.3:c.172G>A	p.Glu58Lys	p.E58K	ENST00000380152		58	Gaa/Aaa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24133968	24133968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	55	337	0	ENST00000263121.7:c.119G>A	p.Arg40Gln	p.R40Q	ENST00000263121	NM_003073.3	40	cGa/cAa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111012	193111012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	106	247	0	ENST00000367435.3:c.545T>A	p.Ile182Asn	p.I182N	ENST00000367435	NM_024529.4	182	aTt/aAt																																																																														
STK40	83931	MSKCC	GRCh37	1	36821013	36821013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	65	572	0	ENST00000373129.3:c.364G>A	p.Glu122Lys	p.E122K	ENST00000373129	NM_032017.1	122	Gag/Aag																																																																														
CDK8	1024	MSKCC	GRCh37	13	26970472	26970472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	130	245	0	ENST00000381527.3:c.841A>G	p.Lys281Glu	p.K281E	ENST00000381527	NM_001260.1	281	Aaa/Gaa																																																																														
RB1	5925	MSKCC	GRCh37	13	48951110	48951110	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	233	361	0	ENST00000267163.4:c.1272C>G	p.Tyr424Ter	p.Y424*	ENST00000267163	NM_000321.2	424	taC/taG																																																																														
AKT1	207	MSKCC	GRCh37	14	105238728	105238728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	123	666	1	ENST00000349310.3:c.1234G>A	p.Val412Met	p.V412M	ENST00000349310	NM_001014432.1	412	Gtg/Atg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130419	29130419	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	108	584	0	ENST00000328354.6:c.291G>A	p.Trp97Ter	p.W97*	ENST00000328354	NM_007194.3	97	tgG/tgA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710596	117710596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	93	308	0	ENST00000368508.3:c.1676G>A	p.Gly559Asp	p.G559D	ENST00000368508	NM_002944.2	559	gGc/gAc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6045547	6045547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	47	253	0	ENST00000265849.7:c.139C>G	p.Leu47Val	p.L47V	ENST00000265849	NM_000535.5	47	Ctg/Gtg																																																																														
MED12	9968	MSKCC	GRCh37	X	70338689	70338914	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAAACAGAAGGAGGTGCGTTCGAAAATCGGGGCTCTGGAGGGGCCGGGGGCACGCGGTCAGCCTAGGAGGAGGCACTGACGGCTGGGAATGGGGGGCGGGGCGGTTCGGTGAGAGCAAAAGTCCCGAAAGGGGGAAGAGTAAAGTGGGCTGGCGTGGGAGGGCAGGACGGGGGGCGGTGGGGGGTTCCAAGGTATGAATAGGGGGTGGTGTAGGGGCCGCACCA	CCCAAACAGAAGGAGGTGCGTTCGAAAATCGGGGCTCTGGAGGGGCCGGGGGCACGCGGTCAGCCTAGGAGGAGGCACTGACGGCTGGGAATGGGGGGCGGGGCGGTTCGGTGAGAGCAAAAGTCCCGAAAGGGGGAAGAGTAAAGTGGGCTGGCGTGGGAGGGCAGGACGGGGGGCGGTGGGGGGTTCCAAGGTATGAATAGGGGGTGGTGTAGGGGCCGCACCA	-			P-0046605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	114	240	0	ENST00000374080.3:c.85_99+211del		p.X29_splice	ENST00000374080		29																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	276	385	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043372	180043372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	96	557	0	ENST00000261937.6:c.3214G>A	p.Gly1072Ser	p.G1072S	ENST00000261937	NM_182925.4	1072	Ggc/Agc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593580	55593580	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0046608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	68	346	0	ENST00000288135.5:c.1648-2A>T		p.X550_splice	ENST00000288135	NM_000222.2	550																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325210	39325210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	69	483	0	ENST00000373001.3:c.109G>A	p.Ala37Thr	p.A37T	ENST00000373001	NM_022157.3	37	Gcg/Acg																																																																														
ATM	472	MSKCC	GRCh37	11	108213980	108213980	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	28	325	0	ENST00000278616.4:c.8300T>A	p.Leu2767His	p.L2767H	ENST00000278616	NM_000051.3	2767	cTt/cAt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041633	47041633	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	148	649	1	ENST00000329236.7:c.1624G>T	p.Glu542Ter	p.E542*	ENST00000329236	NM_001204466.1	542	Gag/Tag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0046609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	220	486	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0046609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	78	330	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	80	441	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023855	27023855	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	107	191	0	ENST00000324856.7:c.961C>T	p.Gln321Ter	p.Q321*	ENST00000324856	NM_006015.4	321	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087907	27087907	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	247	584	0	ENST00000324856.7:c.2194C>T	p.Gln732Ter	p.Q732*	ENST00000324856	NM_006015.4	732	Cag/Tag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18272853	18272853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148193042		P-0046609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	248	574	2	ENST00000222254.8:c.893C>T	p.Ala298Val	p.A298V	ENST00000222254	NM_005027.3	298	gCg/gTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50921080	50921099	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCCTGCCCCCACCCGCAGC	CCCCTGCCCCCACCCGCAGC	-			P-0046609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	134	415	0	ENST00000440232.2:c.3219-18_3220del		p.X1073_splice	ENST00000440232	NM_002691.3	1073																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589632	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0046609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	38	232	0	ENST00000274335.5:c.1397_1399delTAT	p.Leu466del	p.L466del	ENST00000274335		465	agATTa/aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	487	591	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562787	21562787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	221	447	0	ENST00000382592.4:c.1132C>T	p.Arg378Trp	p.R378W	ENST00000382592	NM_014572.2	378	Cgg/Tgg																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250455	26250455	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	171	675	0	ENST00000446824.2:c.379C>G	p.Leu127Val	p.L127V	ENST00000446824	NM_021018.2	127	Ctc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	45	548	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610185	81610185	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142632518		P-0046612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	39	370	0	ENST00000298171.2:c.1783G>A	p.Val595Ile	p.V595I	ENST00000298171	NM_000369.2	595	Gtc/Atc																																																																														
RB1	5925	MSKCC	GRCh37	13	48951053	48951053	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0046612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	18	197	0	ENST00000267163.4:c.1216-1G>C		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																															
NUF2	83540	MSKCC	GRCh37	1	163297321	163297321	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	19	384	0	ENST00000271452.3:c.167T>C	p.Val56Ala	p.V56A	ENST00000271452	NM_145697.2	56	gTa/gCa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99440125	99440125	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	51	380	0	ENST00000268035.6:c.1093C>G	p.Arg365Gly	p.R365G	ENST00000268035	NM_000875.3	365	Cga/Gga																																																																														
NF1	4763	MSKCC	GRCh37	17	29587385	29587386	+	splice_acceptor_variant	Splice_Site	DNP	AG	AG	TT			P-0046612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	28	258	1	ENST00000358273.4:c.4431-2_4431-1delinsTT		p.X1477_splice	ENST00000358273	NM_001042492.2	1477																																																																															
STAT3	6774	MSKCC	GRCh37	17	40481604	40481604	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	25	565	0	ENST00000264657.5:c.1201A>C	p.Asn401His	p.N401H	ENST00000264657	NM_139276.2	401	Aac/Cac																																																																														
CIC	23152	MSKCC	GRCh37	19	42799138	42799138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	36	602	0	ENST00000575354.2:c.4622C>G	p.Thr1541Ser	p.T1541S	ENST00000575354	NM_015125.3	1541	aCt/aGt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86681165	86681165	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	19	245	0	ENST00000274376.6:c.2806del	p.Ser936LeufsTer5	p.S936Lfs*5	ENST00000274376	NM_002890.2	936	Tct/ct																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287521	33287521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	27	572	0	ENST00000374542.5:c.1576C>G	p.Arg526Gly	p.R526G	ENST00000374542	NM_001141970.1	526	Cgc/Ggc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633457	8633457	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0046612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	25	288	0	ENST00000356435.5:c.212T>C	p.Val71Ala	p.V71A	ENST00000356435		71	gTa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	198	559	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0046614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	61	300	0	ENST00000274335.5:c.1727_1729delCGA	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445046	49445046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	39	550	0	ENST00000301067.7:c.2420C>A	p.Ser807Tyr	p.S807Y	ENST00000301067	NM_003482.3	807	tCc/tAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937644	76937644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	26	444	0	ENST00000373344.5:c.3104T>C	p.Ile1035Thr	p.I1035T	ENST00000373344	NM_000489.3	1035	aTt/aCt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	108	284	0				ENST00000310581	NM_198253.2																																																																																
H3F3C	440093	MSKCC	GRCh37	12	31944961	31944961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	48	474	0	ENST00000340398.3:c.140C>T	p.Ala47Val	p.A47V	ENST00000340398	NM_001013699.2	47	gCg/gTg																																																																														
NF2	4771	MSKCC	GRCh37	22	30069466	30069466	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	104	517	0	ENST00000338641.4:c.1331C>G	p.Ser444Ter	p.S444*	ENST00000338641	NM_000268.3	444	tCa/tGa																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650592	48650592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	76	687	0	ENST00000376670.3:c.562C>T	p.Pro188Ser	p.P188S	ENST00000376670	NM_002049.3	188	Ccc/Tcc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	157	537	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	191	342	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	191	342	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216737	2216737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	431	640	0	ENST00000398665.3:c.2381G>A	p.Arg794Lys	p.R794K	ENST00000398665	NM_032482.2	794	aGg/aAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	88	348	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602390	10602391	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	542	662	0	ENST00000171111.5:c.1187dup	p.Tyr396Ter	p.Y396*	ENST00000171111	NM_203500.1	396	tac/taAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	191	342	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427251	49427268	+	inframe_deletion	In_Frame_Del	DEL	TGCTGCTGCTGCTGTTGC	TGCTGCTGCTGCTGTTGC	-			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	135	553	0	ENST00000301067.7:c.11220_11237del	p.Gln3740_Gln3745del	p.Q3740_Q3745del	ENST00000301067	NM_003482.3	3740	caGCAACAGCAGCAGCAGCAc/cac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992062	72992062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	386	554	0	ENST00000268489.5:c.1983G>A	p.Met661Ile	p.M661I	ENST00000268489	NM_006885.3	661	atG/atA																																																																														
STK11	6794	MSKCC	GRCh37	19	1207051	1207051	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	562	769	0	ENST00000326873.7:c.140del	p.Gly47AlafsTer4	p.G47Afs*4	ENST00000326873	NM_000455.4	47	Ggc/gc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70971078	70971078	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	100	557	0	ENST00000276594.2:c.1184-1G>A		p.X395_splice	ENST00000276594	NM_024504.3	395																																																																															
MLH1	4292	MSKCC	GRCh37	3	37067225	37067225	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs143009528		P-0046617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	84	417	0	ENST00000231790.2:c.1136A>G	p.Tyr379Cys	p.Y379C	ENST00000231790	NM_000249.3	379	tAt/tGt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216627	36216627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	62	705	0	ENST00000222270.7:c.3793C>T	p.Leu1265Phe	p.L1265F	ENST00000222270	NM_014727.1	1265	Ctc/Ttc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425674	49425677	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0046617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	148	681	0	ENST00000301067.7:c.12811_12814del	p.Thr4271AlafsTer6	p.T4271Afs*6	ENST00000301067	NM_003482.3	4271	ACAGgc/gc																																																																														
BLM	641	MSKCC	GRCh37	15	91337417	91337417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	54	308	0	ENST00000355112.3:c.3040C>A	p.His1014Asn	p.H1014N	ENST00000355112	NM_000057.2	1014	Cat/Aat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891593	151891593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	206	434	0	ENST00000262189.6:c.4439C>T	p.Ser1480Leu	p.S1480L	ENST00000262189	NM_170606.2	1480	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891615	151891615	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	190	392	1	ENST00000262189.6:c.4417C>T	p.Gln1473Ter	p.Q1473*	ENST00000262189	NM_170606.2	1473	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	56	591	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0046622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	69	515	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485816	57485816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	77	523	0	ENST00000371085.3:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000371085	NM_000516.4	373	Cgc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591903	48591903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	59	564	0	ENST00000342988.3:c.1066C>T	p.Pro356Ser	p.P356S	ENST00000342988	NM_005359.5	356	Cct/Tct																																																																														
FAM175A	0	MSKCC	GRCh37	4	84390203	84390203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113013207		P-0046622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	72	439	0	ENST00000321945.7:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000321945	NM_139076.2	193	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112175397	112175404	+	frameshift_variant	Frame_Shift_Del	DEL	CCAAAAGT	CCAAAAGT	-			P-0046622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	109	352	0	ENST00000257430.4:c.4109_4116del	p.Lys1370ThrfsTer2	p.K1370Tfs*2	ENST00000257430	NM_000038.5	1369	cCCAAAAGT/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	438	816	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	273	538	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900209	101900209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	274	468	0	ENST00000374994.4:c.643C>T	p.Arg215Ter	p.R215*	ENST00000374994	NM_004612.2	215	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099439	157099439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	19	338	0	ENST00000346085.5:c.376C>T	p.Gln126Ter	p.Q126*	ENST00000346085	NM_020732.3	126	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428450	49428450	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	463	867	0	ENST00000301067.7:c.10356-1G>A		p.X3452_splice	ENST00000301067	NM_003482.3	3452																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52621446	52621446	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	354	521	0	ENST00000394830.3:c.2971G>T	p.Glu991Ter	p.E991*	ENST00000394830	NM_018313.4	991	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	116	481	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666657	206666657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	162	654	0	ENST00000367120.3:c.1991C>T	p.Ser664Leu	p.S664L	ENST00000367120	NM_014002.3	664	tCg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	38	278	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	96	511	1	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888210	112888210	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28933388		P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	86	560	0	ENST00000351677.2:c.226G>A	p.Glu76Lys	p.E76K	ENST00000351677	NM_002834.3	76	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	431	866	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	122	491	3	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
AXL	558	MSKCC	GRCh37	19	41727943	41727943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	127	712	0	ENST00000301178.4:c.568C>T	p.Arg190Cys	p.R190C	ENST00000301178	NM_021913.4	190	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112173657	112173658	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	75	425	0	ENST00000257430.4:c.2369_2370del	p.Arg790ThrfsTer8	p.R790Tfs*8	ENST00000257430	NM_000038.5	789	cAG/c																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813333	102813333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	113	613	0	ENST00000307046.8:c.356G>A	p.Arg119His	p.R119H	ENST00000307046	NM_001111285.1	119	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	293	699	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31493329	31493329	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	69	380	0	ENST00000344624.3:c.1827T>G	p.His609Gln	p.H609Q	ENST00000344624		609	caT/caG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0046625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	241	740	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	251	470	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	40	779	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	26	767	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	49	765	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881329	37881329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	4639	719	1	ENST00000269571.5:c.2521C>G	p.Leu841Val	p.L841V	ENST00000269571		841	Ctc/Gtc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	167	627	1	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	194	508	0	ENST00000342988.3:c.988G>T	p.Glu330Ter	p.E330*	ENST00000342988	NM_005359.5	330	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112176372	112176372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	66	307	0	ENST00000257430.4:c.5081G>A	p.Gly1694Asp	p.G1694D	ENST00000257430	NM_000038.5	1694	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	249	281	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023909	27023923	+	inframe_deletion	In_Frame_Del	DEL	GCTGCGGCGGCGGCA	GCTGCGGCGGCGGCA	-	rs751352361		P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	15	53	0	ENST00000324856.7:c.1029_1043del	p.Ala345_Ala349del	p.A345_A349del	ENST00000324856	NM_006015.4	339	GCTGCGGCGGCGGCA/-																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696676	176696676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	53	398	0	ENST00000439151.2:c.5377G>A	p.Glu1793Lys	p.E1793K	ENST00000439151	NM_022455.4	1793	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68846065	68846065	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	169	653	0	ENST00000261769.5:c.1036C>T	p.Gln346Ter	p.Q346*	ENST00000261769	NM_004360.3	346	Caa/Taa																																																																														
MYC	4609	MSKCC	GRCh37	8	128750924	128750924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	151	614	0	ENST00000377970.2:c.461C>T	p.Ser154Leu	p.S154L	ENST00000377970	NM_002467.4	154	tCg/tTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856356	45856356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	342	725	0	ENST00000391945.4:c.1816G>C	p.Glu606Gln	p.E606Q	ENST00000391945	NM_000400.3	606	Gag/Cag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125036	46125036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	230	339	1	ENST00000334344.6:c.223G>A	p.Glu75Lys	p.E75K	ENST00000334344	NM_152641.2	75	Gag/Aag																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495659	72495659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	158	388	0	ENST00000477973.2:c.411G>A	p.Gly138Asp	p.G138D	ENST00000477973	NM_012234.5	138	gGc/gAc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753175	57753175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	50	332	0	ENST00000274289.3:c.841G>A	p.Glu281Lys	p.E281K	ENST00000274289	NM_006622.3	281	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116423497	116423497	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	174	398	0	ENST00000397752.3:c.3772C>T	p.Gln1258Ter	p.Q1258*	ENST00000397752	NM_000245.2	1258	Caa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	495088	495088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	211	472	0	ENST00000399788.2:c.218G>A	p.Arg73Lys	p.R73K	ENST00000399788	NM_001042603.1	73	aGa/aAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245521	153245521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	138	425	0	ENST00000281708.4:c.1670G>T	p.Gly557Val	p.G557V	ENST00000281708	NM_033632.3	557	gGa/gTa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213953	36213953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	184	804	0	ENST00000222270.7:c.2779G>A	p.Val927Met	p.V927M	ENST00000222270	NM_014727.1	927	Gtg/Atg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517414	176517414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	68	533	0	ENST00000292408.4:c.115G>C	p.Glu39Gln	p.E39Q	ENST00000292408	NM_213647.1	39	Gag/Cag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139438540	139438540	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	223	700	0	ENST00000277541.6:c.76C>T	p.Gln26Ter	p.Q26*	ENST00000277541	NM_017617.3	26	Cag/Tag																																																																														
EP300	2033	MSKCC	GRCh37	22	41545870	41545870	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	203	786	1	ENST00000263253.7:c.2485C>T	p.Gln829Ter	p.Q829*	ENST00000263253	NM_001429.3	829	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092818	27092836	+	frameshift_variant	Frame_Shift_Del	DEL	CCATATTCCATGGGTGGAA	CCATATTCCATGGGTGGAA	-			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	395	553	0	ENST00000324856.7:c.2843_2861del	p.Tyr948TrpfsTer14	p.Y948Wfs*14	ENST00000324856	NM_006015.4	947	CCATATTCCATGGGTGGAAcc/cc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28586398	28586398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	133	553	0	ENST00000253063.3:c.40G>A	p.Asp14Asn	p.D14N	ENST00000253063	NM_031459.4	14	Gac/Aac																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39325147	39325147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	278	498	0	ENST00000373001.3:c.172G>A	p.Asp58Asn	p.D58N	ENST00000373001	NM_022157.3	58	Gac/Aac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375933	118375933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	61	592	0	ENST00000534358.1:c.9326C>G	p.Ser3109Cys	p.S3109C	ENST00000534358	NM_005933.3	3109	tCt/tGt																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484363	50484363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	315	462	0	ENST00000394963.4:c.1123C>T	p.His375Tyr	p.H375Y	ENST00000394963	NM_003076.4	375	Cat/Tat																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864933	57864933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	536	718	0	ENST00000228682.2:c.2410C>T	p.Pro804Ser	p.P804S	ENST00000228682	NM_005269.2	804	Cct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913809	32913809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	127	480	0	ENST00000380152.3:c.5317G>A	p.Glu1773Lys	p.E1773K	ENST00000380152		1773	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	42005472	42005472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	309	664	0	ENST00000219905.7:c.3208C>T	p.His1070Tyr	p.H1070Y	ENST00000219905	NM_001164273.1	1070	Cac/Tac																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126100	2126100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	189	741	0	ENST00000219476.3:c.2671C>T	p.His891Tyr	p.H891Y	ENST00000219476	NM_000548.3	891	Cac/Tac																																																																														
CDH1	999	MSKCC	GRCh37	16	68772221	68772221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	393	682	0	ENST00000261769.5:c.70G>A	p.Glu24Lys	p.E24K	ENST00000261769	NM_004360.3	24	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827183	72827183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	280	556	0	ENST00000268489.5:c.9398C>T	p.Ser3133Phe	p.S3133F	ENST00000268489	NM_006885.3	3133	tCc/tTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81971417	81971417	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	126	575	0	ENST00000359376.3:c.3107del	p.Tyr1036SerfsTer8	p.Y1036Sfs*8	ENST00000359376	NM_002661.3	1036	tAc/tc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012186	16012186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	249	602	0	ENST00000268712.3:c.2096G>A	p.Cys699Tyr	p.C699Y	ENST00000268712	NM_006311.3	699	tGt/tAt																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30302621	30302621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	21	106	0	ENST00000322652.5:c.712G>A	p.Glu238Lys	p.E238K	ENST00000322652	NM_015355.2	238	Gaa/Aaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41197736	41197736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	336	693	1	ENST00000357654.3:c.5551G>A	p.Asp1851Asn	p.D1851N	ENST00000357654	NM_007294.3	1851	Gac/Aac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492863	56492863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	215	473	0	ENST00000407977.2:c.76G>A	p.Gly26Arg	p.G26R	ENST00000407977		26	Gga/Aga																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733105	74733118	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGATGTACACGT	CGGGATGTACACGT	-			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	183	535	0	ENST00000359995.5:c.125_138del	p.Asp42AlafsTer23	p.D42Afs*23	ENST00000359995	NM_001195427.1	42	gACGTGTACATCCCG/g																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121134	11121134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	301	767	0	ENST00000344626.4:c.2201T>C	p.Val734Ala	p.V734A	ENST00000344626	NM_003072.3	734	gTg/gCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281578	15281578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	345	694	0	ENST00000263388.2:c.4795C>T	p.His1599Tyr	p.H1599Y	ENST00000263388	NM_000435.2	1599	Cac/Tac																																																																														
JAK3	3718	MSKCC	GRCh37	19	17937608	17937608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	172	770	0	ENST00000458235.1:c.3319A>G	p.Thr1107Ala	p.T1107A	ENST00000458235	NM_000215.3	1107	Act/Gct																																																																														
XPO1	7514	MSKCC	GRCh37	2	61725840	61725840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	296	363	0	ENST00000401558.2:c.727G>A	p.Glu243Lys	p.E243K	ENST00000401558	NM_003400.3	243	Gag/Aag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99163051	99163051	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	75	373	0	ENST00000074304.5:c.1057C>G	p.Gln353Glu	p.Q353E	ENST00000074304	NM_001134224.1	353	Cag/Gag																																																																														
CASP8	841	MSKCC	GRCh37	2	202151236	202151236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	183	344	0	ENST00000358485.4:c.1536G>C	p.Lys512Asn	p.K512N	ENST00000358485	NM_001080125.1	512	aaG/aaC																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812338	212812338	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	56	308	0	ENST00000342788.4:c.238G>C	p.Val80Leu	p.V80L	ENST00000342788	NM_005235.2	80	Gtt/Ctt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57470673	57470673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	290	335	0	ENST00000371085.3:c.146G>A	p.Gly49Glu	p.G49E	ENST00000371085	NM_000516.4	49	gGa/gAa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183775	10183775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	340	600	0	ENST00000256474.2:c.244C>T	p.Arg82Cys	p.R82C	ENST00000256474	NM_000551.3	82	Cgc/Tgc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12393108	12393108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	287	605	0	ENST00000287820.6:c.17G>A	p.Gly6Glu	p.G6E	ENST00000287820	NM_015869.4	6	gGa/gAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47079190	47079190	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	273	568	0	ENST00000409792.3:c.7316T>G	p.Leu2439Arg	p.L2439R	ENST00000409792	NM_014159.6	2439	cTg/cGg																																																																														
MST1	4485	MSKCC	GRCh37	3	49723546	49723546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	31	65	0	ENST00000449682.2:c.1096G>A	p.Ala366Thr	p.A366T	ENST00000449682	NM_020998.3	366	Gcg/Acg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143350335	143350335	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	25	309	0	ENST00000262992.4:c.127T>A	p.Phe43Ile	p.F43I	ENST00000262992	NM_001101669.1	43	Ttc/Atc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245405	153245405	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	74	630	0	ENST00000281708.4:c.1786T>G	p.Ser596Ala	p.S596A	ENST00000281708	NM_033632.3	596	Tct/Gct																																																																														
E2F3	1871	MSKCC	GRCh37	6	20488347	20488347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	231	496	0	ENST00000346618.3:c.1003C>A	p.Leu335Ile	p.L335I	ENST00000346618	NM_001949.4	335	Cta/Ata																																																																														
CCND3	896	MSKCC	GRCh37	6	41903744	41903751	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGGGGG	CCGGGGGG	-			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	161	702	0	ENST00000372991.4:c.806_813del	p.Ala269GlyfsTer52	p.A269Gfs*52	ENST00000372991	NM_001760.3	269	gCCCCCCGG/g																																																																														
MET	4233	MSKCC	GRCh37	7	116423422	116423422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	100	367	0	ENST00000397752.3:c.3697G>A	p.Glu1233Lys	p.E1233K	ENST00000397752	NM_000245.2	1233	Gaa/Aaa																																																																														
RHEB	6009	MSKCC	GRCh37	7	151181852	151181852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	253	397	0	ENST00000262187.5:c.163C>T	p.His55Tyr	p.H55Y	ENST00000262187	NM_005614.3	55	Cat/Tat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151846072	151846072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	117	535	0	ENST00000262189.6:c.12940G>A	p.Glu4314Lys	p.E4314K	ENST00000262189	NM_170606.2	4314	Gaa/Aaa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98222050	98222050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	174	380	0	ENST00000331920.6:c.2719C>G	p.Leu907Val	p.L907V	ENST00000331920	NM_000264.3	907	Ctg/Gtg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894923	101894923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	31	394	0	ENST00000374994.4:c.476C>G	p.Pro159Arg	p.P159R	ENST00000374994	NM_004612.2	159	cCa/cGa																																																																														
ABL1	25	MSKCC	GRCh37	9	133759631	133759631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	287	675	0	ENST00000318560.5:c.1954G>A	p.Asp652Asn	p.D652N	ENST00000318560	NM_005157.4	652	Gac/Aac																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123499615	123499615	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	85	287	0	ENST00000371139.4:c.142C>G	p.His48Asp	p.H48D	ENST00000371139	NM_001114937.2	48	Cac/Gac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	359	685	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	375	781	0	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																														
APC	324	MSKCC	GRCh37	5	112178410	112178410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	38	442	0	ENST00000257430.4:c.7119G>A	p.Met2373Ile	p.M2373I	ENST00000257430	NM_000038.5	2373	atG/atA																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223188	2223188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	158	687	2	ENST00000326181.6:c.800C>T	p.Thr267Met	p.T267M	ENST00000326181	NM_032271.2	267	aCg/aTg																																																																														
RAD51	5888	MSKCC	GRCh37	15	41001254	41001254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	31	529	0	ENST00000267868.3:c.375G>C	p.Met125Ile	p.M125I	ENST00000267868	NM_002875.4	125	atG/atC																																																																														
APC	324	MSKCC	GRCh37	5	112178500	112178500	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	30	364	0	ENST00000257430.4:c.7209G>C	p.Gln2403His	p.Q2403H	ENST00000257430	NM_000038.5	2403	caG/caC																																																																														
APC	324	MSKCC	GRCh37	5	112178870	112178870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	35	409	0	ENST00000257430.4:c.7579G>A	p.Asp2527Asn	p.D2527N	ENST00000257430	NM_000038.5	2527	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112179081	112179081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	26	323	0	ENST00000257430.4:c.7790G>C	p.Gly2597Ala	p.G2597A	ENST00000257430	NM_000038.5	2597	gGa/gCa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259454	55259454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	302	551	0	ENST00000275493.2:c.2512C>G	p.Leu838Val	p.L838V	ENST00000275493	NM_005228.3	838	Ctg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	63	327	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	23	436	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	75	589	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	48	298	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
CASP8	841	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	47	461	1	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	59	473	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777792	3777792	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200566758		P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	105	780	0	ENST00000262367.5:c.7256C>T	p.Ala2419Val	p.A2419V	ENST00000262367	NM_004380.2	2419	gCg/gTg																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944982	31944982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	83	630	0	ENST00000340398.3:c.119G>A	p.Arg40His	p.R40H	ENST00000340398	NM_001013699.2	40	cGc/cAc																																																																														
BARD1	580	MSKCC	GRCh37	2	215645983	215645984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	53	476	1	ENST00000260947.4:c.614dup	p.Gln206AlafsTer8	p.Q206Afs*8	ENST00000260947	NM_000465.2	205	aag/aaAg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528825	157528825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	53	513	1	ENST00000346085.5:c.6554del	p.Pro2185ArgfsTer8	p.P2185Rfs*8	ENST00000346085	NM_020732.3	2184	Ccc/cc																																																																														
CASP8	841	MSKCC	GRCh37	2	202141631	202141631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	85	372	0	ENST00000358485.4:c.919C>T	p.Arg307Trp	p.R307W	ENST00000358485	NM_001080125.1	307	Cgg/Tgg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24135858	24135859	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	71	412	0	ENST00000263121.7:c.351dupC	p.Thr118HisfsTer52	p.T118Hfs*52	ENST00000263121	NM_003073.3	115	-/C																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	41	380	2	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720712	89720712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	14	116	0	ENST00000371953.3:c.867del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	288	gAa/ga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	34	549	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																														
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	102	545	1	ENST00000355112.3:c.3651delA	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	53	323	2	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	90	461	2	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134884864	134884864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	86	522	0	ENST00000398015.3:c.1640C>T	p.Ala547Val	p.A547V	ENST00000398015	NM_004441.4	547	gCg/gTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396925	139396925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	45	361	2	ENST00000277541.6:c.5183C>T	p.Pro1728Leu	p.P1728L	ENST00000277541	NM_017617.3	1728	cCg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827892	40827892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	76	475	0	ENST00000373198.4:c.2536G>A	p.Val846Ile	p.V846I	ENST00000373198	NM_133170.3	846	Gtc/Atc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	79	633	7	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037427	12037427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	83	600	1	ENST00000396373.4:c.1058G>A	p.Arg353Gln	p.R353Q	ENST00000396373	NM_001987.4	353	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910307	50910307	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143076166		P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	116	637	0	ENST00000440232.2:c.1562G>A	p.Arg521Gln	p.R521Q	ENST00000440232	NM_002691.3	521	cGg/cAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360946	118360946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	63	452	0	ENST00000534358.1:c.4678G>A	p.Ala1560Thr	p.A1560T	ENST00000534358	NM_005933.3	1560	Gcc/Acc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	74	558	4	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89468397	89468398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1467832547		P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	39	247	0	ENST00000336596.2:c.1938dup	p.Glu647ArgfsTer7	p.E647Rfs*7	ENST00000336596	NM_005233.5	644	tca/tcAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	63	678	4	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429367	78429367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	61	505	0	ENST00000370768.2:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000370768	NM_003902.3	359	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214713	36214714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	69	495	0	ENST00000222270.7:c.3145dup	p.Ala1049GlyfsTer39	p.A1049Gfs*39	ENST00000222270	NM_014727.1	1047	cgg/cGgg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520202	176520202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	76	658	0	ENST00000292408.4:c.1121C>T	p.Ala374Val	p.A374V	ENST00000292408	NM_213647.1	374	gCg/gTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941843	71941843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	75	495	2	ENST00000298229.2:c.1201C>T	p.Arg401Trp	p.R401W	ENST00000298229	NM_001567.3	401	Cgg/Tgg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804366	46804366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	89	535	0	ENST00000290295.7:c.641G>A	p.Arg214His	p.R214H	ENST00000290295	NM_006361.5	214	cGt/cAt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190344	32190344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146490163		P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	64	560	0	ENST00000375023.3:c.395G>A	p.Arg132His	p.R132H	ENST00000375023	NM_004557.3	132	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224340	36224340	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	45	614	1	ENST00000222270.7:c.6895del	p.Arg2299GlyfsTer26	p.R2299Gfs*26	ENST00000222270	NM_014727.1	2297	gCc/gc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141561430	141561430	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	54	427	1	ENST00000220592.5:c.1375delC	p.Gln459SerfsTer9	p.Q459Sfs*9	ENST00000220592	NM_012154.3	459	Cag/ag																																																																														
STK40	83931	MSKCC	GRCh37	1	36808981	36808981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	76	556	2	ENST00000373129.3:c.1073C>T	p.Ala358Val	p.A358V	ENST00000373129	NM_032017.1	358	gCg/gTg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637354	47637354	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	95	656	1	ENST00000233146.2:c.488T>A	p.Val163Asp	p.V163D	ENST00000233146	NM_000251.2	163	gTt/gAt																																																																														
MET	4233	MSKCC	GRCh37	7	116395479	116395479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	59	402	0	ENST00000397752.3:c.1772G>A	p.Arg591Gln	p.R591Q	ENST00000397752	NM_000245.2	591	cGg/cAg																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514056	69514056	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138132534		P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	82	627	2	ENST00000294312.3:c.625G>A	p.Val209Met	p.V209M	ENST00000294312	NM_005117.2	209	Gtg/Atg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148515170	148515170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	70	355	0	ENST00000320356.2:c.1039C>T	p.Arg347Trp	p.R347W	ENST00000320356	NM_004456.4	347	Cgg/Tgg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981492	70981492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	77	720	0	ENST00000276594.2:c.604C>A	p.Leu202Met	p.L202M	ENST00000276594	NM_024504.3	202	Ctg/Atg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517553	176517553	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149419025		P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	95	708	2	ENST00000292408.4:c.254G>A	p.Arg85His	p.R85H	ENST00000292408	NM_213647.1	85	cGc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76918969	76918969	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	84	502	0	ENST00000373344.5:c.4022del	p.Leu1341CysfsTer5	p.L1341Cfs*5	ENST00000373344	NM_000489.3	1341	tTg/tg																																																																														
TERT	7015	MSKCC	GRCh37	5	1260647	1260647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	58	608	1	ENST00000310581.5:c.2912G>A	p.Arg971His	p.R971H	ENST00000310581	NM_198253.2	971	cGt/cAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435313	56435313	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	58	583	0	ENST00000407977.2:c.1824del	p.Arg609GlyfsTer91	p.R609Gfs*91	ENST00000407977		608	ggG/gg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671528	30671528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	109	675	0	ENST00000376406.3:c.5432G>A	p.Arg1811His	p.R1811H	ENST00000376406	NM_014641.2	1811	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261862	16261862	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	69	551	0	ENST00000375759.3:c.9127A>G	p.Ser3043Gly	p.S3043G	ENST00000375759	NM_015001.2	3043	Agc/Ggc																																																																														
STK40	83931	MSKCC	GRCh37	1	36807372	36807372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	78	618	0	ENST00000373129.3:c.1292G>A	p.Arg431His	p.R431H	ENST00000373129	NM_032017.1	431	cGc/cAc																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117690317	117690317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	60	412	0	ENST00000369458.3:c.812C>T	p.Ala271Val	p.A271V	ENST00000369458	NM_024626.3	271	gCa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425301	49425301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	120	665	0	ENST00000301067.7:c.13187C>A	p.Pro4396His	p.P4396H	ENST00000301067	NM_003482.3	4396	cCt/cAt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112272	115112272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	16	88	0	ENST00000257566.3:c.1468G>A	p.Ala490Thr	p.A490T	ENST00000257566	NM_016569.3	490	Gcc/Acc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43699705	43699706	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	53	541	0	ENST00000382044.4:c.5809_5810del	p.Lys1937ValfsTer3	p.K1937Vfs*3	ENST00000382044	NM_001141980.1	1937	AAg/g																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968210	15968210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	27	289	0	ENST00000268712.3:c.5075C>T	p.Pro1692Leu	p.P1692L	ENST00000268712	NM_006311.3	1692	cCg/cTg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699374	47699374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	67	451	0	ENST00000347630.2:c.134G>A	p.Arg45Gln	p.R45Q	ENST00000347630	NM_001007230.1	45	cGg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492776	56492776	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	83	540	1	ENST00000407977.2:c.163del	p.Met55TrpfsTer7	p.M55Wfs*7	ENST00000407977		55	Atg/tg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78867516	78867516	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140597469		P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	82	541	1	ENST00000306801.3:c.2252C>T	p.Ala751Val	p.A751V	ENST00000306801	NM_020761.2	751	gCg/gTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292598	15292598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	83	664	0	ENST00000263388.2:c.2581G>A	p.Gly861Ser	p.G861S	ENST00000263388	NM_000435.2	861	Ggt/Agt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702261	47702261	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	73	495	0	ENST00000233146.2:c.1857T>G	p.Tyr619Ter	p.Y619*	ENST00000233146	NM_000251.2	619	taT/taG																																																																														
SRC	6714	MSKCC	GRCh37	20	36031193	36031193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	91	673	0	ENST00000358208.4:c.1312C>T	p.Leu438Phe	p.L438F	ENST00000358208		438	Ctc/Ttc																																																																														
BCL6	604	MSKCC	GRCh37	3	187440364	187440364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	92	515	0	ENST00000232014.4:c.2003G>A	p.Arg668His	p.R668H	ENST00000232014	NM_001130845.1	668	cGt/cAt																																																																														
TP63	8626	MSKCC	GRCh37	3	189607200	189607200	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	82	678	0	ENST00000264731.3:c.1583del	p.Pro528HisfsTer26	p.P528Hfs*26	ENST00000264731	NM_003722.4	527	Ccc/cc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161352	55161352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	57	447	0	ENST00000257290.5:c.3183G>T	p.Lys1061Asn	p.K1061N	ENST00000257290	NM_006206.4	1061	aaG/aaT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221710	55221710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	54	372	0	ENST00000275493.2:c.754C>A	p.Arg252Ser	p.R252S	ENST00000275493	NM_005228.3	252	Cgc/Agc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874739	151874739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	56	440	0	ENST00000262189.6:c.7799C>T	p.Pro2600Leu	p.P2600L	ENST00000262189	NM_170606.2	2600	cCg/cTg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372123	55372123	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	40	334	0	ENST00000297316.4:c.817del	p.Arg273AspfsTer114	p.R273Dfs*114	ENST00000297316	NM_022454.3	271	caC/ca																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247573	53247573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	56	403	1	ENST00000375401.3:c.236C>T	p.Thr79Met	p.T79M	ENST00000375401	NM_004187.3	79	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0028499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	302	739	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910333	29910333	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0028499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	336	750	0	ENST00000376809.5:c.3G>T	p.Met1?	p.M1?	ENST00000376809	NM_002116.7	1	atG/atT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680186	30680186	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	316	729	0	ENST00000376406.3:c.1533G>C	p.Glu511Asp	p.E511D	ENST00000376406	NM_014641.2	511	gaG/gaC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046444-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			111	10	146	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046444-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	23	435	0	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046444-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	49	524	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115865	8115866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046444-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			548	33	659	0	ENST00000346208.3:c.1213dup	p.His405ProfsTer102	p.H405Pfs*102	ENST00000346208		404	agc/agCc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981088	201981089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCT			P-0046444-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	52	655	0	ENST00000359651.3:c.167_168insTTCT	p.Lys56AsnfsTer37	p.K56Nfs*37	ENST00000359651		56	aag/aaTTCTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024024	27024024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046444-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			74	18	56	0	ENST00000324856.7:c.1133delC	p.Pro378LeufsTer13	p.P378Lfs*13	ENST00000324856	NM_006015.4	377	aCc/ac																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96931053	96931053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046444-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			163	47	183	0	ENST00000258439.3:c.67C>A	p.Leu23Met	p.L23M	ENST00000258439	NM_001193304.2	23	Ctg/Atg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265455	198265455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046444-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	70	388	0	ENST00000335508.6:c.2702A>G	p.Gln901Arg	p.Q901R	ENST00000335508	NM_012433.2	901	cAa/cGa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938494	44938515	+	frameshift_variant	Frame_Shift_Del	DEL	CACTGGAACAAAGAAAATCTGG	CACTGGAACAAAGAAAATCTGG	-			P-0046444-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			163	33	226	0	ENST00000377967.4:c.3044_3065del	p.Thr1015IlefsTer26	p.T1015Ifs*26	ENST00000377967	NM_021140.2	1014	ccCACTGGAACAAAGAAAATCTGG/cc																																																																														
ATRX	546	MSKCC	GRCh37	X	76907705	76907705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046444-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			224	14	252	0	ENST00000373344.5:c.4456G>C	p.Asp1486His	p.D1486H	ENST00000373344	NM_000489.3	1486	Gat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059213	27059213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	90	520	1	ENST00000324856.7:c.1850C>T	p.Ser617Leu	p.S617L	ENST00000324856	NM_006015.4	617	tCa/tTa																																																																														
JUN	3725	MSKCC	GRCh37	1	59247875	59247875	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	248	670	2	ENST00000371222.2:c.868C>T	p.Gln290Ter	p.Q290*	ENST00000371222	NM_002228.3	290	Cag/Tag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984398	201984398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	261	661	0	ENST00000359651.3:c.1063G>C	p.Gly355Arg	p.G355R	ENST00000359651		355	Ggc/Cgc																																																																														
EED	8726	MSKCC	GRCh37	11	85956278	85956278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	77	212	0	ENST00000263360.6:c.7G>A	p.Glu3Lys	p.E3K	ENST00000263360	NM_003797.3	3	Gag/Aag																																																																														
PGR	5241	MSKCC	GRCh37	11	100999618	100999618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	199	811	1	ENST00000325455.5:c.184C>T	p.Arg62Trp	p.R62W	ENST00000325455	NM_001202474.3	62	Cgg/Tgg																																																																														
SDHD	6392	MSKCC	GRCh37	11	111957681	111957681	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	152	544	0	ENST00000375549.3:c.50G>A	p.Arg17Gln	p.R17Q	ENST00000375549	NM_003002.3	17	cGa/cAa																																																																														
CCND2	894	MSKCC	GRCh37	12	4383225	4383225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	90	476	0	ENST00000261254.3:c.19G>A	p.Glu7Lys	p.E7K	ENST00000261254	NM_001759.3	7	Gag/Aag																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871780	12871780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	53	222	0	ENST00000228872.4:c.497G>A	p.Arg166Lys	p.R166K	ENST00000228872	NM_004064.3	166	aGa/aAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46205217	46205217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	32	346	0	ENST00000334344.6:c.301G>A	p.Glu101Lys	p.E101K	ENST00000334344	NM_152641.2	101	Gag/Aag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243430	46243430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	25	367	0	ENST00000334344.6:c.1783C>T	p.His595Tyr	p.H595Y	ENST00000334344	NM_152641.2	595	Cat/Tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431598	49431598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	200	758	0	ENST00000301067.7:c.9541G>A	p.Glu3181Lys	p.E3181K	ENST00000301067	NM_003482.3	3181	Gag/Aag																																																																														
CDK8	1024	MSKCC	GRCh37	13	26927925	26927925	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	32	289	0	ENST00000381527.3:c.364C>T	p.Gln122Ter	p.Q122*	ENST00000381527	NM_001260.1	122	Cag/Tag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061621	38061621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	88	167	0	ENST00000250448.2:c.368C>T	p.Ser123Phe	p.S123F	ENST00000250448	NM_004496.3	123	tCc/tTc																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023121	33023121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	85	593	2	ENST00000300177.4:c.230G>A	p.Ser77Asn	p.S77N	ENST00000300177	NM_001191322.1	77	aGc/aAc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66779604	66779604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	85	433	0	ENST00000307102.5:c.934G>A	p.Glu312Lys	p.E312K	ENST00000307102	NM_002755.3	312	Gag/Aag																																																																														
BLM	641	MSKCC	GRCh37	15	91293213	91293213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	39	424	0	ENST00000355112.3:c.715G>A	p.Asp239Asn	p.D239N	ENST00000355112	NM_000057.2	239	Gat/Aat																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639551	3639551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	219	837	0	ENST00000294008.3:c.4088C>T	p.Ser1363Leu	p.S1363L	ENST00000294008	NM_032444.2	1363	tCa/tTa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641214	3641214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	240	788	1	ENST00000294008.3:c.2425G>A	p.Glu809Lys	p.E809K	ENST00000294008	NM_032444.2	809	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3794916	3794916	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	71	398	1	ENST00000262367.5:c.3961G>T	p.Glu1321Ter	p.E1321*	ENST00000262367	NM_004380.2	1321	Gaa/Taa																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348891	11348891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	106	254	0	ENST00000332029.2:c.445G>A	p.Glu149Lys	p.E149K	ENST00000332029	NM_003745.1	149	Gag/Aag																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14016015	14016015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	25	244	0	ENST00000311895.7:c.335G>A	p.Arg112Lys	p.R112K	ENST00000311895	NM_005236.2	112	aGg/aAg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351253	89351253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	150	714	0	ENST00000301030.4:c.1697C>T	p.Ser566Leu	p.S566L	ENST00000301030	NM_001256183.1	566	tCa/tTa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	200	667	0	ENST00000269571.5:c.829G>T	p.Asp277Tyr	p.D277Y	ENST00000269571		277	Gac/Tac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	246	616	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883728	37883728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	238	955	0	ENST00000269571.5:c.3340G>A	p.Glu1114Lys	p.E1114K	ENST00000269571		1114	Gag/Aag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244157	41244157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	45	491	0	ENST00000357654.3:c.3391G>A	p.Asp1131Asn	p.D1131N	ENST00000357654	NM_007294.3	1131	Gat/Aat																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246539	41246539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	74	583	0	ENST00000357654.3:c.1009G>A	p.Glu337Lys	p.E337K	ENST00000357654	NM_007294.3	337	Gaa/Aaa																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73774771	73774771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	124	455	2	ENST00000254810.4:c.316G>A	p.Glu106Lys	p.E106K	ENST00000254810	NM_005324.3	106	Gaa/Aaa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56339023	56339023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	70	105	1	ENST00000348428.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000348428	NM_006785.3	50	Gag/Aag																																																																														
CALR	811	MSKCC	GRCh37	19	13054560	13054560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	84	471	0	ENST00000316448.5:c.1087G>A	p.Glu363Lys	p.E363K	ENST00000316448	NM_004343.3	363	Gag/Aag																																																																														
CCNE1	898	MSKCC	GRCh37	19	30303666	30303666	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	191	476	0	ENST00000262643.3:c.94A>T	p.Lys32Ter	p.K32*	ENST00000262643	NM_001238.2	32	Aag/Tag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860557	45860557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	256	788	0	ENST00000391945.4:c.1450A>G	p.Thr484Ala	p.T484A	ENST00000391945	NM_000400.3	484	Acg/Gcg																																																																														
ALK	238	MSKCC	GRCh37	2	29445244	29445244	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145194836		P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	102	600	0	ENST00000389048.3:c.3481G>A	p.Glu1161Lys	p.E1161K	ENST00000389048	NM_004304.4	1161	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	29448386	29448386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	254	791	0	ENST00000389048.3:c.3113C>T	p.Ser1038Phe	p.S1038F	ENST00000389048	NM_004304.4	1038	tCt/tTt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605065	46605065	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	281	854	0	ENST00000263734.3:c.1282G>T	p.Gly428Cys	p.G428C	ENST00000263734	NM_001430.4	428	Ggc/Tgc																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96931044	96931049	+	inframe_deletion	In_Frame_Del	DEL	GCTTGG	GCTTGG	-			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	77	233	0	ENST00000258439.3:c.71_76del	p.Pro24_Lys25del	p.P24_K25del	ENST00000258439	NM_001193304.2	24	cCCAAGCag/cag																																																																														
CASP8	841	MSKCC	GRCh37	2	202149715	202149715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	102	552	0	ENST00000358485.4:c.1156G>A	p.Asp386Asn	p.D386N	ENST00000358485	NM_001080125.1	386	Gat/Aat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989521	212989521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	64	402	0	ENST00000342788.4:c.190G>A	p.Glu64Lys	p.E64K	ENST00000342788	NM_005235.2	64	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989592	212989592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	32	336	1	ENST00000342788.4:c.119C>T	p.Ser40Phe	p.S40F	ENST00000342788	NM_005235.2	40	tCt/tTt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225400262	225400262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	24	208	0	ENST00000264414.4:c.361G>A	p.Asp121Asn	p.D121N	ENST00000264414	NM_003590.4	121	Gac/Aac																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660831	227660831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	116	639	1	ENST00000305123.5:c.2624G>A	p.Arg875Gln	p.R875Q	ENST00000305123	NM_005544.2	875	cGa/cAa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663157	227663157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	204	732	0	ENST00000305123.5:c.298G>A	p.Glu100Lys	p.E100K	ENST00000305123	NM_005544.2	100	Gag/Aag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022824	31022824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	110	591	0	ENST00000375687.4:c.2309C>T	p.Ser770Leu	p.S770L	ENST00000375687	NM_015338.5	770	tCa/tTa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968335	134968335	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	85	565	0	ENST00000398015.3:c.2846+2T>A		p.X949_splice	ENST00000398015	NM_004441.4	949																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430868	181430868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	184	863	0	ENST00000325404.1:c.720G>A	p.Met240Ile	p.M240I	ENST00000325404	NM_003106.3	240	atG/atA																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245402	153245402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	59	559	1	ENST00000281708.4:c.1789G>A	p.Gly597Arg	p.G597R	ENST00000281708	NM_033632.3	597	Ggg/Agg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250850	153250850	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	16	374	0	ENST00000281708.4:c.1210A>T	p.Lys404Ter	p.K404*	ENST00000281708	NM_033632.3	404	Aaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	108	189	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38958879	38958879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	22	234	0	ENST00000357387.3:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000357387	NM_152756.3	745	Gaa/Aaa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505133	149505133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	140	500	0	ENST00000261799.4:c.1682G>A	p.Arg561His	p.R561H	ENST00000261799	NM_002609.3	561	cGt/cAt																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26021009	26021009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	142	502	0	ENST00000357647.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000357647	NM_003529.2	98	Gag/Aag																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197259	26197259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	128	587	0	ENST00000356476.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000356476		74	Gag/Aag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983870	2983870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	193	679	0	ENST00000396946.4:c.660G>A	p.Met220Ile	p.M220I	ENST00000396946	NM_032415.4	220	atG/atA																																																																														
MET	4233	MSKCC	GRCh37	7	116380970	116380970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	153	577	0	ENST00000397752.3:c.1592C>T	p.Ser531Phe	p.S531F	ENST00000397752	NM_000245.2	531	tCt/tTt																																																																														
MET	4233	MSKCC	GRCh37	7	116409717	116409717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	18	187	0	ENST00000397752.3:c.2602G>A	p.Glu868Lys	p.E868K	ENST00000397752	NM_000245.2	868	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879508	151879508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	51	452	0	ENST00000262189.6:c.5437C>T	p.Gln1813Ter	p.Q1813*	ENST00000262189	NM_170606.2	1813	Cag/Tag																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287398	38287398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	173	774	0	ENST00000425967.3:c.259C>T	p.Arg87Cys	p.R87C	ENST00000425967	NM_001174067.1	87	Cgc/Tgc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104597	69104597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	97	717	0	ENST00000288368.4:c.4441G>A	p.Glu1481Lys	p.E1481K	ENST00000288368	NM_024870.2	1481	Gaa/Aaa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225896	53225896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	218	364	0	ENST00000375401.3:c.2953G>A	p.Glu985Lys	p.E985K	ENST00000375401	NM_004187.3	985	Gag/Aag																																																																														
MED12	9968	MSKCC	GRCh37	X	70347265	70347265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	155	288	1	ENST00000374080.3:c.2929G>A	p.Asp977Asn	p.D977N	ENST00000374080		977	Gat/Aat																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220440	123220440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	54	297	0	ENST00000218089.9:c.3097C>T	p.Arg1033Ter	p.R1033*	ENST00000218089	NM_001042749.1	1033	Cga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224449	123224449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	46	240	0	ENST00000218089.9:c.3302G>A	p.Ser1101Asn	p.S1101N	ENST00000218089	NM_001042749.1	1101	aGt/aAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579345	7579353	+	inframe_deletion	In_Frame_Del	DEL	CAAGAAGCC	CAAGAAGCC	-			P-0046573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	232	662	0	ENST00000269305.4:c.334_342del	p.Gly112_Leu114del	p.G112_L114del	ENST00000269305	NM_001126112.2	112	GGCTTCTTG/-																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945444	151945444	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	237	678	0	ENST00000262189.6:c.2075T>C	p.Val692Ala	p.V692A	ENST00000262189	NM_170606.2	692	gTc/gCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	79	348	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654616	67654616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	101	427	0	ENST00000264010.4:c.1103G>A	p.Arg368His	p.R368H	ENST00000264010	NM_006565.3	368	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	195	716	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681139	37681139	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	112	429	0	ENST00000447079.4:c.3307+1G>A		p.X1103_splice	ENST00000447079	NM_015083.1	1103																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41419867	41419867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	345	538	0	ENST00000373198.4:c.454G>A	p.Ala152Thr	p.A152T	ENST00000373198	NM_133170.3	152	Gcc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	47	469	0	ENST00000263967.3:c.1638G>C	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caC																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245521	153245521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	71	347	0	ENST00000281708.4:c.1670G>T	p.Gly557Val	p.G557V	ENST00000281708	NM_033632.3	557	gGa/gTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	77	262	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112155002	112155002	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	108	510	1	ENST00000257430.4:c.1273G>T	p.Glu425Ter	p.E425*	ENST00000257430	NM_000038.5	425	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175587	112175794	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCT	ACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCT	-			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	51	309	0	ENST00000257430.4:c.4296_4503del	p.Pro1433ValfsTer5	p.P1433Vfs*5	ENST00000257430	NM_000038.5	1432	ccACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCT/cc																																																																														
ATRX	546	MSKCC	GRCh37	X	76952063	76952063	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0046574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	16	296	0	ENST00000373344.5:c.370+2T>C		p.X124_splice	ENST00000373344	NM_000489.3	124																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	40	430	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	65	620	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	31	345	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	51	382	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	52	533	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597402	10597402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	91	801	1	ENST00000171111.5:c.1801C>T	p.Arg601Trp	p.R601W	ENST00000171111	NM_203500.1	601	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	15	353	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637649	176637650	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	47	495	0	ENST00000439151.2:c.2256_2257del	p.Pro753LysfsTer11	p.P753Kfs*11	ENST00000439151	NM_022455.4	750	gCT/g																																																																														
INSR	3643	MSKCC	GRCh37	19	7120689	7120689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	87	678	0	ENST00000302850.5:c.3601C>T	p.Arg1201Trp	p.R1201W	ENST00000302850	NM_000208.2	1201	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	41	625	5	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214893	36214894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	66	746	0	ENST00000222270.7:c.3325dupC	p.Arg1109ProfsTer4	p.R1109Pfs*4	ENST00000222270	NM_014727.1	1107	acc/aCcc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226345	2226345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	101	949	1	ENST00000326181.6:c.1958G>A	p.Arg653Gln	p.R653Q	ENST00000326181	NM_032271.2	653	cGg/cAg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131973793	131973793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	24	284	0	ENST00000265335.6:c.3496C>T	p.Arg1166Trp	p.R1166W	ENST00000265335		1166	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023460	27023461	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGGGGC			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	39	451	0	ENST00000324856.7:c.568_574dup	p.Leu192ArgfsTer210	p.L192Rfs*210	ENST00000324856	NM_006015.4	189	ggc/ggCGGGGGCc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342848	118342848	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	23	265	1	ENST00000534358.1:c.977del	p.Lys326SerfsTer74	p.K326Sfs*74	ENST00000534358	NM_005933.3	325	gAa/ga																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924286	112924286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	47	681	1	ENST00000351677.2:c.1232C>T	p.Thr411Met	p.T411M	ENST00000351677	NM_002834.3	411	aCg/aTg																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129015	30129015	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	57	618	0	ENST00000263025.4:c.751C>G	p.Leu251Val	p.L251V	ENST00000263025	NM_002746.2	251	Ctg/Gtg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602854	10602854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	108	833	0	ENST00000171111.5:c.724G>A	p.Glu242Lys	p.E242K	ENST00000171111	NM_203500.1	242	Gag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638066	176638066	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	59	604	0	ENST00000439151.2:c.2669del	p.Phe890SerfsTer22	p.F890Sfs*22	ENST00000439151	NM_022455.4	889	cTt/ct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120288	94120290	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0046575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	30	363	0	ENST00000369303.4:c.761_763del	p.Gly254del	p.G254del	ENST00000369303	NM_004440.3	254	gGAGaa/gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0046576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	94	928	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0046577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	63	354	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0046577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	13	396	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578513	7578513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	236	917	0	ENST00000269305.4:c.417G>C	p.Lys139Asn	p.K139N	ENST00000269305	NM_001126112.2	139	aaG/aaC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0046577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	49	325	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0046577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	18	353	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	72	451	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711933	89711933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	44	494	0	ENST00000371953.3:c.551A>G	p.Asn184Ser	p.N184S	ENST00000371953	NM_000314.4	184	aAt/aGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720837	89720838	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0046577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	50	326	0	ENST00000371953.3:c.989_990del	p.Lys330ArgfsTer12	p.K330Rfs*12	ENST00000371953	NM_000314.4	330	AAa/a																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161472	2161472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	112	689	1	ENST00000434045.2:c.55T>C	p.Ser19Pro	p.S19P	ENST00000434045	NM_001127598.1	19	Tct/Cct																																																																														
CBL	867	MSKCC	GRCh37	11	119142443	119142443	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0046577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	62	364	0	ENST00000264033.4:c.444-2A>C		p.X148_splice	ENST00000264033	NM_005188.3	148																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	130	157	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	24	650	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	370	620	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	37	757	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48878061	48878062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	52	149	0	ENST00000267163.4:c.19dup	p.Arg7ProfsTer24	p.R7Pfs*24	ENST00000267163	NM_000321.2	5	acc/aCcc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	183	674	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270108	66270108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	35	371	0	ENST00000273854.3:c.1774G>A	p.Val592Ile	p.V592I	ENST00000273854	NM_004439.5	592	Gtc/Atc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78704435	78704435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	48	474	0	ENST00000306801.3:c.583G>A	p.Asp195Asn	p.D195N	ENST00000306801	NM_020761.2	195	Gac/Aac																																																																														
BCL6	604	MSKCC	GRCh37	3	187449636	187449636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	57	437	0	ENST00000232014.4:c.244G>A	p.Gly82Arg	p.G82R	ENST00000232014	NM_001130845.1	82	Gga/Aga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105721	27105721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	37	393	0	ENST00000324856.7:c.5332G>A	p.Glu1778Lys	p.E1778K	ENST00000324856	NM_006015.4	1778	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105731	27105731	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	44	406	0	ENST00000324856.7:c.5342T>C	p.Val1781Ala	p.V1781A	ENST00000324856	NM_006015.4	1781	gTa/gCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445455	49445464	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGAGATTC	AGGGAGATTC	-			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	332	792	0	ENST00000301067.7:c.2002_2011del	p.Glu668CysfsTer259	p.E668Cfs*259	ENST00000301067	NM_003482.3	668	GAATCTCCCTtg/tg																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626826	14626826	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	58	624	0	ENST00000254322.2:c.949G>C	p.Glu317Gln	p.E317Q	ENST00000254322	NM_006145.1	317	Gag/Cag																																																																														
REL	5966	MSKCC	GRCh37	2	61147770	61147770	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	18	193	0	ENST00000295025.8:c.1080C>G	p.Phe360Leu	p.F360L	ENST00000295025	NM_002908.2	360	ttC/ttG																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138478028	138478028	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	36	369	0	ENST00000289153.2:c.158C>G	p.Ser53Cys	p.S53C	ENST00000289153	NM_006219.2	53	tCt/tGt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542231	141542231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	27	481	0	ENST00000220592.5:c.2492C>G	p.Ser831Cys	p.S831C	ENST00000220592	NM_012154.3	831	tCt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0046580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	38	228	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108183151	108183151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	18	256	0	ENST00000278616.4:c.5932G>A	p.Glu1978Lys	p.E1978K	ENST00000278616	NM_000051.3	1978	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118369231	118369231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	26	316	0	ENST00000534358.1:c.5949G>C	p.Leu1983Phe	p.L1983F	ENST00000534358	NM_005933.3	1983	ttG/ttC																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145488	58145488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	33	442	0	ENST00000257904.6:c.13C>G	p.Arg5Gly	p.R5G	ENST00000257904	NM_000075.3	5	Cga/Gga																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513232	44513232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	32	370	0	ENST00000291552.4:c.703G>A	p.Glu235Lys	p.E235K	ENST00000291552	NM_006758.2	235	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76778822	76778822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	20	237	0	ENST00000373344.5:c.6757G>A	p.Glu2253Lys	p.E2253K	ENST00000373344	NM_000489.3	2253	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	67	333	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	91	508	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	13	406	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																														
APC	324	MSKCC	GRCh37	5	112174998	112174999	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	46	197	0	ENST00000257430.4:c.3709_3710del	p.Gln1237GlufsTer2	p.Q1237Efs*2	ENST00000257430	NM_000038.5	1236	gCA/g																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117435	115117435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	80	361	0	ENST00000257566.3:c.739A>G	p.Lys247Glu	p.K247E	ENST00000257566	NM_016569.3	247	Aaa/Gaa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500630	99500630	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	202	679	1	ENST00000268035.6:c.4063A>G	p.Asn1355Asp	p.N1355D	ENST00000268035	NM_000875.3	1355	Aac/Gac																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395659	45395659	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	72	422	0	ENST00000262160.6:c.475G>T	p.Glu159Ter	p.E159*	ENST00000262160	NM_005901.5	159	Gaa/Taa																																																																														
ABL1	25	MSKCC	GRCh37	9	133761003	133761003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	144	856	0	ENST00000318560.5:c.3326C>T	p.Ala1109Val	p.A1109V	ENST00000318560	NM_005157.4	1109	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	110	326	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	142	251	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																														
AXL	558	MSKCC	GRCh37	19	41748895	41748895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	553	695	0	ENST00000301178.4:c.1420C>T	p.Arg474Trp	p.R474W	ENST00000301178	NM_021913.4	474	Cgg/Tgg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412647	63412648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	356	711	0	ENST00000330258.3:c.519dupT	p.Ser174Ter	p.S174*	ENST00000330258	NM_152424.3	173	-/T																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830878	3830878	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	299	519	1	ENST00000262367.5:c.1678C>T	p.Pro560Ser	p.P560S	ENST00000262367	NM_004380.2	560	Cca/Tca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830189	72830189	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	181	513	0	ENST00000268489.5:c.6392T>G	p.Leu2131Arg	p.L2131R	ENST00000268489	NM_006885.3	2131	cTc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577107	7577115	+	inframe_deletion	In_Frame_Del	DEL	ACAGGCACA	ACAGGCACA	-			P-0046582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	362	721	0	ENST00000269305.4:c.823_831del	p.Cys275_Cys277del	p.C275_C277del	ENST00000269305	NM_001126112.2	275	TGTGCCTGT/-																																																																														
RB1	5925	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	25	175	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga																																																																														
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0046584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	81	633	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46254727	46254728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	27	292	0	ENST00000334344.6:c.4922dup	p.Trp1642ValfsTer15	p.W1642Vfs*15	ENST00000334344	NM_152641.2	1639	-/A																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537964	212537964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	40	367	0	ENST00000342788.4:c.1641G>T	p.Glu547Asp	p.E547D	ENST00000342788	NM_005235.2	547	gaG/gaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55955043	55955043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	39	401	0	ENST00000263923.4:c.3502G>T	p.Ala1168Ser	p.A1168S	ENST00000263923	NM_002253.2	1168	Gct/Tct																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911648	39911648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	30	212	0	ENST00000378444.4:c.4982G>A	p.Arg1661Gln	p.R1661Q	ENST00000378444	NM_001123385.1	1661	cGa/cAa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	23	348	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	67	454	0	ENST00000347630.2:c.373T>A	p.Phe125Ile	p.F125I	ENST00000347630	NM_001007230.1	125	Ttt/Att																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426553	49426553	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	118	762	0	ENST00000301067.7:c.11935A>C	p.Asn3979His	p.N3979H	ENST00000301067	NM_003482.3	3979	Aac/Cac																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7978925	7978925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026698-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	167	447	3	ENST00000319144.4:c.1642C>T	p.Arg548Trp	p.R548W	ENST00000319144	NM_001139.2	548	Cgg/Tgg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56857674	56857674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144804729		P-0026698-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	251	567	0	ENST00000308159.5:c.710C>T	p.Pro237Leu	p.P237L	ENST00000308159	NM_014669.4	237	cCg/cTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877859	151877860	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026698-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	281	346	0	ENST00000262189.6:c.7085dup	p.Gly2363ArgfsTer4	p.G2363Rfs*4	ENST00000262189	NM_170606.2	2362	tca/tcCa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862752	9862752	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	28	600	0	ENST00000330684.3:c.2551G>C	p.Gly851Arg	p.G851R	ENST00000330684	NM_001134407.1	851	Ggc/Cgc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40447796	40447796	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	88	647	0	ENST00000345506.4:c.535A>T	p.Ser179Cys	p.S179C	ENST00000345506	NM_003152.3	179	Agc/Tgc																																																																														
VHL	7428	MSKCC	GRCh37	3	10188207	10188207	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	93	579	0	ENST00000256474.2:c.350G>C	p.Trp117Ser	p.W117S	ENST00000256474	NM_000551.3	117	tGg/tCg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	66	554	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489535	56489535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	124	710	0	ENST00000267101.3:c.2000G>A	p.Arg667His	p.R667H	ENST00000267101	NM_001982.3	667	cGt/cAt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	39	196	1	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200018596		P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	26	409	0	ENST00000263967.3:c.344G>T	p.Arg115Leu	p.R115L	ENST00000263967	NM_006218.2	115	cGa/cTa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223917	53223917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	107	993	0	ENST00000375401.3:c.3442G>A	p.Val1148Met	p.V1148M	ENST00000375401	NM_004187.3	1148	Gtg/Atg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	126	745	7	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	47	587	6	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	105	454	5	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	147	1000	5	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																														
ALK	238	MSKCC	GRCh37	2	29416659	29416659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	86	606	1	ENST00000389048.3:c.4294C>T	p.Arg1432Trp	p.R1432W	ENST00000389048	NM_004304.4	1432	Cgg/Tgg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806177	1806177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	233	986	0	ENST00000260795.2:c.1196G>A	p.Arg399His	p.R399H	ENST00000260795		399	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			614	201	1102	7	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026194	71026194	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	43	371	0	ENST00000318789.4:c.1429-1G>T		p.X477_splice	ENST00000318789	NM_032682.5	477																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			578	204	897	5	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	240	1123	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	126	621	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599970	10599970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			678	242	997	0	ENST00000171111.5:c.1606C>T	p.Arg536Cys	p.R536C	ENST00000171111	NM_203500.1	536	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231345	5231345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	148	842	1	ENST00000357368.4:c.2131G>A	p.Val711Met	p.V711M	ENST00000357368	NM_002850.3	711	Gtg/Atg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	90	767	7	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937422	178937422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	39	280	0	ENST00000263967.3:c.1810T>C	p.Cys604Arg	p.C604R	ENST00000263967	NM_006218.2	604	Tgt/Cgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256265	16256265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	82	668	0	ENST00000375759.3:c.3530G>A	p.Arg1177His	p.R1177H	ENST00000375759	NM_015001.2	1177	cGt/cAt																																																																														
AKT2	208	MSKCC	GRCh37	19	40741906	40741906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	237	909	0	ENST00000392038.2:c.1066G>A	p.Glu356Lys	p.E356K	ENST00000392038	NM_001626.4	356	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220899	36220899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			90	53	363	0	ENST00000222270.7:c.4949C>T	p.Thr1650Met	p.T1650M	ENST00000222270	NM_014727.1	1650	aCg/aTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89444996	89444996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	39	480	0	ENST00000336596.2:c.1316C>T	p.Pro439Leu	p.P439L	ENST00000336596	NM_005233.5	439	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420625	49420625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	134	814	0	ENST00000301067.7:c.15124del	p.Ala5042ProfsTer9	p.A5042Pfs*9	ENST00000301067	NM_003482.3	5042	Gcc/cc																																																																														
APC	324	MSKCC	GRCh37	5	112178804	112178804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	45	477	0	ENST00000257430.4:c.7513C>T	p.Arg2505Ter	p.R2505*	ENST00000257430	NM_000038.5	2505	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257653	16257653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	96	604	0	ENST00000375759.3:c.4918C>T	p.Pro1640Ser	p.P1640S	ENST00000375759	NM_015001.2	1640	Cca/Tca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023751	27023752	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	121	421	0	ENST00000324856.7:c.858_859del	p.Gln288AlafsTer111	p.Q288Afs*111	ENST00000324856	NM_006015.4	286	aCT/a																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089697	27089697	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	123	706	2	ENST00000324856.7:c.2657del	p.Pro886HisfsTer5	p.P886Hfs*5	ENST00000324856	NM_006015.4	885	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27102070	27102070	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	138	675	0	ENST00000324856.7:c.4996A>G	p.Thr1666Ala	p.T1666A	ENST00000324856	NM_006015.4	1666	Acc/Gcc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981135	201981136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	202	853	0	ENST00000359651.3:c.216dup	p.Leu73SerfsTer19	p.L73Sfs*19	ENST00000359651		72	gtt/gTtt																																																																														
SESN3	143686	MSKCC	GRCh37	11	94917624	94917624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	58	580	0	ENST00000536441.1:c.897del	p.Phe299LeufsTer20	p.F299Lfs*20	ENST00000536441	NM_144665.3	299	ttT/tt																																																																														
ATM	472	MSKCC	GRCh37	11	108236119	108236119	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	99	661	0	ENST00000278616.4:c.9055G>T	p.Gly3019Ter	p.G3019*	ENST00000278616	NM_000051.3	3019	Gga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906952	32906952	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			156	44	520	0	ENST00000380152.3:c.1337T>C	p.Leu446Ser	p.L446S	ENST00000380152		446	tTg/tCg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640588	3640588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			659	255	1057	1	ENST00000294008.3:c.3051G>T	p.Glu1017Asp	p.E1017D	ENST00000294008	NM_032444.2	1017	gaG/gaT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347402	89347402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	174	952	0	ENST00000301030.4:c.5548T>C	p.Tyr1850His	p.Y1850H	ENST00000301030	NM_001256183.1	1850	Tac/Cac																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362202	40362202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	78	538	0	ENST00000293328.3:c.1893G>T	p.Trp631Cys	p.W631C	ENST00000293328	NM_012448.3	631	tgG/tgT																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805751	46805751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	108	836	0	ENST00000290295.7:c.205del	p.Val69CysfsTer29	p.V69Cfs*29	ENST00000290295	NM_006361.5	69	Gtg/tg																																																																														
BCL2	596	MSKCC	GRCh37	18	60985768	60985768	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	18	334	0	ENST00000333681.4:c.132del	p.Ala45HisfsTer51	p.A45Hfs*51	ENST00000333681		44	ccC/cc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097631	11097631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	211	1082	1	ENST00000344626.4:c.811G>A	p.Gly271Arg	p.G271R	ENST00000344626	NM_003072.3	271	Ggg/Agg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965994	18965994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	57	804	0	ENST00000262803.5:c.1487C>T	p.Thr496Met	p.T496M	ENST00000262803	NM_002911.3	496	aCg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214900	36214900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	183	961	0	ENST00000222270.7:c.3326G>A	p.Arg1109Gln	p.R1109Q	ENST00000222270	NM_014727.1	1109	cGa/cAa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909458	50909458	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	236	989	0	ENST00000440232.2:c.1262T>C	p.Leu421Pro	p.L421P	ENST00000440232	NM_002691.3	421	cTg/cCg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47690264	47690264	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	51	456	0	ENST00000233146.2:c.1481C>A	p.Ser494Ter	p.S494*	ENST00000233146	NM_000251.2	494	tCa/tAa																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873203	136873203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	85	487	0	ENST00000241393.3:c.295G>A	p.Val99Met	p.V99M	ENST00000241393	NM_003467.2	99	Gtg/Atg																																																																														
EP300	2033	MSKCC	GRCh37	22	41546027	41546027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			683	120	948	0	ENST00000263253.7:c.2642C>A	p.Pro881His	p.P881H	ENST00000263253	NM_001429.3	881	cCt/cAt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940886	49940886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			561	229	1006	1	ENST00000296474.3:c.157G>T	p.Gly53Cys	p.G53C	ENST00000296474	NM_002447.2	53	Ggc/Tgc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851807	134851807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	128	801	0	ENST00000398015.3:c.1213G>A	p.Asp405Asn	p.D405N	ENST00000398015	NM_004441.4	405	Gac/Aac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541130	187541130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	66	433	0	ENST00000441802.2:c.6610G>A	p.Val2204Met	p.V2204M	ENST00000441802	NM_005245.3	2204	Gtg/Atg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797269	32797269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			825	192	1014	1	ENST00000374899.4:c.1840C>T	p.Arg614Cys	p.R614C	ENST00000374899	NM_018833.2	614	Cgt/Tgt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137323818	137323818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043033-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	177	992	1	ENST00000481739.1:c.1111C>T	p.Arg371Cys	p.R371C	ENST00000481739	NM_002957.4	371	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			93	17	388	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0045435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			146	27	610	3	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			108	22	377	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711947	89711947	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	16	557	0	ENST00000371953.3:c.565A>T	p.Arg189Ter	p.R189*	ENST00000371953	NM_000314.4	189	Aga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717650	89717650	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0045435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	12	605	0	ENST00000371953.3:c.675T>G	p.Tyr225Ter	p.Y225*	ENST00000371953	NM_000314.4	225	taT/taG																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200720	128200720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	9	961	1	ENST00000341105.2:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000341105	NM_032638.4	362	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023182	27023188	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGCCG	GGAGCCG	-			P-0045435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			84	33	109	0	ENST00000324856.7:c.289_295del	p.Glu97ThrfsTer2	p.E97Tfs*2	ENST00000324856	NM_006015.4	96	gcGGAGCCG/gc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	11	279	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	99	312	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0046305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	37	308	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	61	443	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	49	235	1	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107023	27107023	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	71	498	0	ENST00000324856.7:c.6634C>T	p.Gln2212Ter	p.Q2212*	ENST00000324856	NM_006015.4	2212	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106539	27106539	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	122	668	0	ENST00000324856.7:c.6150G>A	p.Trp2050Ter	p.W2050*	ENST00000324856	NM_006015.4	2050	tgG/tgA																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487930	56487930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	42	582	0	ENST00000267101.3:c.1661C>T	p.Pro554Leu	p.P554L	ENST00000267101	NM_001982.3	554	cCg/cTg																																																																														
CCND1	595	MSKCC	GRCh37	11	69466021	69466022	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCACCGACCAAG			P-0046305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	139	866	0	ENST00000227507.2:c.867_868insCAAGCCACCGAC	p.Asp289_Val290insGlnAlaThrAsp	p.D289_V290insQATD	ENST00000227507	NM_053056.2	287	ccc/cCCACCGACCAAGcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0046307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	561	654	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0046307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	65	215	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	44	276	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	79	681	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335782	73335782	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0046309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	55	236	0	ENST00000377767.4:c.2511+2T>C		p.X837_splice	ENST00000377767	NM_014953.3	837																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373784	118373784	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	38	247	0	ENST00000534358.1:c.7177A>C	p.Asn2393His	p.N2393H	ENST00000534358	NM_005933.3	2393	Aac/Cac																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73112851	73112851	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	22	220	0	ENST00000356692.5:c.448del	p.Met150Ter	p.M150*	ENST00000356692		149	cgA/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	68	325	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0046337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	1322	391	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356427	66356427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	67	238	0	ENST00000273854.3:c.1070C>A	p.Pro357His	p.P357H	ENST00000273854	NM_004439.5	357	cCc/cAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040977	47040977	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	133	615	0	ENST00000329236.7:c.1273del	p.Ala425LeufsTer201	p.A425Lfs*201	ENST00000329236	NM_001204466.1	425	Gct/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0046338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	446	519	1	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
FLCN	201163	MSKCC	GRCh37	17	17127318	17127318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	201	563	0	ENST00000285071.4:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000285071	NM_144997.5	179	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178943818	178943818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	47	262	0	ENST00000263967.3:c.2485C>T	p.Leu829Phe	p.L829F	ENST00000263967	NM_006218.2	829	Ctt/Ttt																																																																														
IRF4	3662	MSKCC	GRCh37	6	398864	398864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	75	461	0	ENST00000380956.4:c.674C>A	p.Pro225Gln	p.P225Q	ENST00000380956	NM_001195286.1	225	cCa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76855257	76855366	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATTCATCCATACTGTCTTCATCAAAATAACCCTAGAGAAAAAAAAATGACCACTATTTTAATAGAATATCTCAACTTACACTGGAAATTATATTGATGTTCATTTAAG	AAATTCATCCATACTGTCTTCATCAAAATAACCCTAGAGAAAAAAAAATGACCACTATTTTAATAGAATATCTCAACTTACACTGGAAATTATATTGATGTTCATTTAAG	-			P-0046338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	44	165	0	ENST00000373344.5:c.5698-77_5730del		p.X1900_splice	ENST00000373344	NM_000489.3	1900																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	211	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	100	248	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	482	549	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528647	89528647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	115	149	1	ENST00000336596.2:c.2947G>A	p.Val983Met	p.V983M	ENST00000336596	NM_005233.5	983	Gtg/Atg																																																																														
ATM	472	MSKCC	GRCh37	11	108199948	108199948	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	47	142	0	ENST00000278616.4:c.7290T>G	p.His2430Gln	p.H2430Q	ENST00000278616	NM_000051.3	2430	caT/caG																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862839	9862839	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	179	525	2	ENST00000330684.3:c.2464T>C	p.Tyr822His	p.Y822H	ENST00000330684	NM_001134407.1	822	Tac/Cac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448374	56448375	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	424	544	2	ENST00000407977.2:c.272_273delinsTT	p.Cys91Phe	p.C91F	ENST00000407977		91	tGC/tTT																																																																														
ACVR1	90	MSKCC	GRCh37	2	158637111	158637163	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCTGCAAAGGAGAGAAAGGAAGGGGAAAAAAAAAAAAAAGAGGAATTACCGT	ATCTGCAAAGGAGAGAAAGGAAGGGGAAAAAAAAAAAAAAGAGGAATTACCGT	-			P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	260	324	0	ENST00000263640.3:c.68-51_69del		p.X23_splice	ENST00000263640	NM_001105.4	23																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005874	69005874	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	122	347	1	ENST00000288368.4:c.2285A>G	p.Glu762Gly	p.E762G	ENST00000288368	NM_024870.2	762	gAg/gGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	246	319	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	243	311	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	247	557	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944279	81944279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	320	582	2	ENST00000359376.3:c.1888C>T	p.Arg630Trp	p.R630W	ENST00000359376	NM_002661.3	630	Cgg/Tgg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460527	149460527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139635308		P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	183	578	1	ENST00000286301.3:c.110C>T	p.Thr37Met	p.T37M	ENST00000286301	NM_005211.3	37	aCg/aTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436533	110436533	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	178	627	0	ENST00000375856.3:c.1868T>C	p.Val623Ala	p.V623A	ENST00000375856	NM_003749.2	623	gTg/gCg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593553	48593554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	69	163	0	ENST00000342988.3:c.1307dup	p.Val437GlyfsTer3	p.V437Gfs*3	ENST00000342988	NM_005359.5	435	ata/atAa																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197358	26197358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	94	351	0	ENST00000356476.2:c.121C>T	p.Arg41Cys	p.R41C	ENST00000356476		41	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0046343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	93	417	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100375	27100375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	173	489	0	ENST00000324856.7:c.4087C>T	p.Gln1363Ter	p.Q1363*	ENST00000324856	NM_006015.4	1363	Caa/Taa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	95	313	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0046343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	85	307	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	164	354	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76939715	76939715	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149249195		P-0046343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	87	508	0	ENST00000373344.5:c.1033G>A	p.Ala345Thr	p.A345T	ENST00000373344	NM_000489.3	345	Gca/Aca																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845597	63845598	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0046343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	55	210	0	ENST00000279873.7:c.1337_1338dup	p.Glu447MetfsTer33	p.E447Mfs*33	ENST00000279873	NM_032199.2	446	cat/cATat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831330	72831330	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	104	384	0	ENST00000268489.5:c.5251C>T	p.Gln1751Ter	p.Q1751*	ENST00000268489	NM_006885.3	1751	Caa/Taa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372439	55372440	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	156	702	0	ENST00000297316.4:c.1130dup	p.Tyr379LeufsTer5	p.Y379Lfs*5	ENST00000297316	NM_022454.3	377	ctc/cTtc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	218	431	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	531	491	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	278	569	0	ENST00000269305.4:c.281C>G	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tGa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690814	89690814	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	73	230	0	ENST00000371953.3:c.221G>C	p.Arg74Thr	p.R74T	ENST00000371953	NM_000314.4	74	aGa/aCa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131925368	131925368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	64	124	0	ENST00000265335.6:c.1291G>A	p.Glu431Lys	p.E431K	ENST00000265335		431	Gag/Aag																																																																														
AKT3	10000	MSKCC	GRCh37	1	243708820	243708820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	142	280	0	ENST00000263826.5:c.1243G>A	p.Asp415Asn	p.D415N	ENST00000263826	NM_005465.4	415	Gat/Aat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118339506	118339506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	194	289	0	ENST00000534358.1:c.449G>A	p.Gly150Asp	p.G150D	ENST00000534358	NM_005933.3	150	gGt/gAt																																																																														
RB1	5925	MSKCC	GRCh37	13	49033953	49033953	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	457	323	0	ENST00000267163.4:c.2090del	p.Asp697AlafsTer8	p.D697Afs*8	ENST00000267163	NM_000321.2	697	gAc/gc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986829	36986829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	47	118	1	ENST00000354822.5:c.860G>A	p.Arg287His	p.R287H	ENST00000354822	NM_001079668.2	287	cGc/cAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89337228	89337228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	106	411	0	ENST00000301030.4:c.7803G>A	p.Met2601Ile	p.M2601I	ENST00000301030	NM_001256183.1	2601	atG/atA																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10260319	10260319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	157	474	0	ENST00000340748.4:c.2348G>C	p.Trp783Ser	p.W783S	ENST00000340748		783	tGg/tCg																																																																														
EP300	2033	MSKCC	GRCh37	22	41548288	41548288	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	146	255	0	ENST00000263253.7:c.3076G>T	p.Glu1026Ter	p.E1026*	ENST00000263253	NM_001429.3	1026	Gag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188337	32188337	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	85	579	0	ENST00000375023.3:c.1004C>G	p.Ser335Cys	p.S335C	ENST00000375023	NM_004557.3	335	tCt/tGt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129346	64129346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	730	758	1	ENST00000334205.4:c.778C>T	p.Pro260Ser	p.P260S	ENST00000334205	NM_003942.2	260	Ccc/Tcc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037475	12037475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	417	341	0	ENST00000396373.4:c.1106G>T	p.Arg369Leu	p.R369L	ENST00000396373	NM_001987.4	369	cGg/cTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860081	57860081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	465	799	0	ENST00000228682.2:c.821G>T	p.Gly274Val	p.G274V	ENST00000228682	NM_005269.2	274	gGc/gTc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609461	81609461	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	191	409	0	ENST00000298171.2:c.1059C>A	p.Tyr353Ter	p.Y353*	ENST00000298171	NM_000369.2	353	taC/taA																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423549	88423549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	580	611	0	ENST00000360948.2:c.2286G>T	p.Glu762Asp	p.E762D	ENST00000360948	NM_001012338.2	762	gaG/gaT																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813728	50813729	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	343	651	1	ENST00000398568.2:c.1282_1283delinsTT	p.Gly428Leu	p.G428L	ENST00000398568	NM_001042412.1	428	GGa/TTa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654636	67654636	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	507	485	0	ENST00000264010.4:c.1123G>T	p.Gly375Ter	p.G375*	ENST00000264010	NM_006565.3	375	Gga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	712	737	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	840	736	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245032	41245032	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	324	700	0	ENST00000357654.3:c.2516A>G	p.His839Arg	p.H839R	ENST00000357654	NM_007294.3	839	cAc/cGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573658	48573658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	143	347	0	ENST00000342988.3:c.242G>T	p.Arg81Met	p.R81M	ENST00000342988	NM_005359.5	81	aGg/aTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10260638	10260638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	323	438	0	ENST00000340748.4:c.2224G>A	p.Gly742Arg	p.G742R	ENST00000340748		742	Ggg/Agg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599929	10599929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	716	611	0	ENST00000171111.5:c.1647del	p.Met550Ter	p.M550*	ENST00000171111	NM_203500.1	549	ccC/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216128	36216128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	269	550	0	ENST00000222270.7:c.3536G>C	p.Cys1179Ser	p.C1179S	ENST00000222270	NM_014727.1	1179	tGt/tCt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57474028	57474028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	196	287	0	ENST00000371085.3:c.245G>T	p.Ser82Ile	p.S82I	ENST00000371085	NM_000516.4	82	aGc/aTc																																																																														
ATR	545	MSKCC	GRCh37	3	142231180	142231180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	258	486	0	ENST00000350721.4:c.4774G>C	p.Ala1592Pro	p.A1592P	ENST00000350721	NM_001184.3	1592	Gca/Cca																																																																														
APC	324	MSKCC	GRCh37	5	112174282	112174282	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	200	302	0	ENST00000257430.4:c.2991T>A	p.Tyr997Ter	p.Y997*	ENST00000257430	NM_000038.5	997	taT/taA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518067	8518067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	397	448	0	ENST00000356435.5:c.1324G>C	p.Glu442Gln	p.E442Q	ENST00000356435		442	Gaa/Caa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317482	1317482	+	downstream_gene_variant	3'Flank	SNP	C	C	G			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	297	689	0				ENST00000381566																																																																																	
AMER1	139285	MSKCC	GRCh37	X	63409964	63409964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	217	263	0	ENST00000330258.3:c.3203G>T	p.Ser1068Ile	p.S1068I	ENST00000330258	NM_152424.3	1068	aGc/aTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	95	407	1				ENST00000310581	NM_198253.2																																																																																
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0046361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	173	624	1	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717699	89717699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	87	381	1	ENST00000371953.3:c.724G>A	p.Glu242Lys	p.E242K	ENST00000371953	NM_000314.4	242	Gag/Aag																																																																														
BARD1	580	MSKCC	GRCh37	2	215632284	215632284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	63	501	0	ENST00000260947.4:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000260947	NM_000465.2	497	cCa/cTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41560064	41560064	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	46	282	0	ENST00000263253.7:c.3736G>T	p.Glu1246Ter	p.E1246*	ENST00000263253	NM_001429.3	1246	Gaa/Taa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778021	135778021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	125	498	0	ENST00000298552.3:c.2362G>T	p.Glu788Ter	p.E788*	ENST00000298552	NM_001162426.1	788	Gaa/Taa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	8	404	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521285	187521285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200468783		P-0046362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	36	542	1	ENST00000441802.2:c.11870G>A	p.Arg3957His	p.R3957H	ENST00000441802	NM_005245.3	3957	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	110	186	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	132	181	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	418	325	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273836	18273836	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	144	355	0	ENST00000222254.8:c.1169C>G	p.Ser390Ter	p.S390*	ENST00000222254	NM_005027.3	390	tCa/tGa																																																																														
SDHC	6391	MSKCC	GRCh37	1	161310391	161310391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	127	206	0	ENST00000367975.2:c.187C>T	p.Leu63Phe	p.L63F	ENST00000367975	NM_003001.3	63	Ctt/Ttt																																																																														
NF2	4771	MSKCC	GRCh37	22	30069267	30069267	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	46	282	0	ENST00000338641.4:c.1132G>T	p.Glu378Ter	p.E378*	ENST00000338641	NM_000268.3	378	Gag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169207	32169207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	192	345	0	ENST00000375023.3:c.3826G>C	p.Glu1276Gln	p.E1276Q	ENST00000375023	NM_004557.3	1276	Gag/Cag																																																																														
CASP8	841	MSKCC	GRCh37	2	202139648	202139648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	100	137	0	ENST00000358485.4:c.809C>T	p.Ser270Phe	p.S270F	ENST00000358485	NM_001080125.1	270	tCt/tTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319902	8319902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	87	202	0	ENST00000356435.5:c.5599G>A	p.Glu1867Lys	p.E1867K	ENST00000356435		1867	Gaa/Aaa																																																																														
MCL1	4170	MSKCC	GRCh37	1	150550913	150550913	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	50	210	0	ENST00000369026.2:c.743G>C	p.Arg248Pro	p.R248P	ENST00000369026	NM_021960.4	248	cGa/cCa																																																																														
TET1	80312	MSKCC	GRCh37	10	70450591	70450591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	125	196	0	ENST00000373644.4:c.5431G>A	p.Glu1811Lys	p.E1811K	ENST00000373644	NM_030625.2	1811	Gaa/Aaa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39234309	39234309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	74	163	0	ENST00000402219.2:c.2536G>A	p.Glu846Lys	p.E846K	ENST00000402219	NM_005633.3	846	Gaa/Aaa																																																																														
MITF	4286	MSKCC	GRCh37	3	69928503	69928503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	205	334	1	ENST00000352241.4:c.323C>T	p.Ser108Phe	p.S108F	ENST00000352241	NM_198159.2	108	tCt/tTt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780677	56780677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	111	231	0	ENST00000337432.4:c.692C>T	p.Ser231Leu	p.S231L	ENST00000337432	NM_058216.2	231	tCa/tTa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79968621	79968621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	126	217	0	ENST00000265081.6:c.971C>T	p.Ser324Leu	p.S324L	ENST00000265081	NM_002439.4	324	tCa/tTa																																																																														
AXL	558	MSKCC	GRCh37	19	41744512	41744512	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	170	320	0	ENST00000301178.4:c.1132G>C	p.Glu378Gln	p.E378Q	ENST00000301178	NM_021913.4	378	Gag/Cag																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166199	118166199	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	119	194	0	ENST00000369448.3:c.709G>C	p.Glu237Gln	p.E237Q	ENST00000369448	NM_017709.3	237	Gaa/Caa																																																																														
FH	2271	MSKCC	GRCh37	1	241671976	241671976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	105	248	0	ENST00000366560.3:c.665C>T	p.Ser222Phe	p.S222F	ENST00000366560	NM_000143.3	222	tCc/tTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258095	123258095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	120	203	0	ENST00000358487.5:c.1586C>T	p.Ser529Phe	p.S529F	ENST00000358487	NM_000141.4	529	tCt/tTt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046497	30046497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	135	266	0	ENST00000331968.5:c.2686G>A	p.Glu896Lys	p.E896K	ENST00000331968	NM_002742.2	896	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	41991303	41991303	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	29	216	0	ENST00000219905.7:c.2134G>C	p.Glu712Gln	p.E712Q	ENST00000219905	NM_001164273.1	712	Gaa/Caa																																																																														
BLM	641	MSKCC	GRCh37	15	91347475	91347475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	145	207	0	ENST00000355112.3:c.3637G>C	p.Glu1213Gln	p.E1213Q	ENST00000355112	NM_000057.2	1213	Gag/Cag																																																																														
CDH1	999	MSKCC	GRCh37	16	68771320	68771320	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	89	174	0	ENST00000261769.5:c.2T>A	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	aTg/aAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81914529	81914529	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	145	207	0	ENST00000359376.3:c.663C>G	p.Phe221Leu	p.F221L	ENST00000359376	NM_002661.3	221	ttC/ttG																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81957093	81957093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	140	171	0	ENST00000359376.3:c.2311C>T	p.Gln771Ter	p.Q771*	ENST00000359376	NM_002661.3	771	Cag/Tag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47685250	47685250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	183	185	0	ENST00000347630.2:c.700G>C	p.Glu234Gln	p.E234Q	ENST00000347630	NM_001007230.1	234	Gag/Cag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885865	59885865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	103	216	0	ENST00000259008.2:c.881G>T	p.Arg294Ile	p.R294I	ENST00000259008	NM_032043.2	294	aGa/aTa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39573271	39573271	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	67	175	0	ENST00000262039.4:c.752A>T	p.Glu251Val	p.E251V	ENST00000262039	NM_002647.2	251	gAa/gTa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026159	48026159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	49	157	0	ENST00000234420.5:c.1037C>T	p.Ser346Phe	p.S346F	ENST00000234420	NM_000179.2	346	tCt/tTt																																																																														
REL	5966	MSKCC	GRCh37	2	61145589	61145589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	75	203	2	ENST00000295025.8:c.701C>T	p.Ala234Val	p.A234V	ENST00000295025	NM_002908.2	234	gCt/gTt																																																																														
INHA	3623	MSKCC	GRCh37	2	220439415	220439415	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	66	168	0	ENST00000243786.2:c.269-1G>C		p.X90_splice	ENST00000243786	NM_002191.3	90																																																																															
TOP1	7150	MSKCC	GRCh37	20	39750728	39750728	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	136	145	0	ENST00000361337.2:c.2128G>T	p.Glu710Ter	p.E710*	ENST00000361337	NM_003286.2	710	Gaa/Taa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256765	46256765	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	63	170	0	ENST00000371998.3:c.821C>G	p.Ser274Ter	p.S274*	ENST00000371998		274	tCa/tGa																																																																														
EP300	2033	MSKCC	GRCh37	22	41545870	41545870	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	308	374	0	ENST00000263253.7:c.2485C>T	p.Gln829Ter	p.Q829*	ENST00000263253	NM_001429.3	829	Cag/Tag																																																																														
EP300	2033	MSKCC	GRCh37	22	41574896	41574896	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	152	297	0	ENST00000263253.7:c.7181G>C	p.Gly2394Ala	p.G2394A	ENST00000263253	NM_001429.3	2394	gGa/gCa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442595	52442595	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	98	173	0	ENST00000460680.1:c.150del	p.Phe50LeufsTer22	p.F50Lfs*22	ENST00000460680	NM_004656.3	50	ttC/tt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960067	134960067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	54	332	0	ENST00000398015.3:c.2424G>A	p.Trp808Ter	p.W808*	ENST00000398015	NM_004441.4	808	tgG/tgA																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181348	185181348	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	73	127	0	ENST00000265026.3:c.1289G>C	p.Arg430Thr	p.R430T	ENST00000265026	NM_004721.4	430	aGa/aCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517807	187517807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	86	151	0	ENST00000441802.2:c.12887G>A	p.Arg4296Gln	p.R4296Q	ENST00000441802	NM_005245.3	4296	cGa/cAa																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26021020	26021020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	242	224	0	ENST00000357647.3:c.303G>C	p.Leu101Phe	p.L101F	ENST00000357647	NM_003529.2	101	ttG/ttC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	15	458	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0046365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	47	526	3	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939252	71939252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	51	717	0	ENST00000298229.2:c.201C>G	p.His67Gln	p.H67Q	ENST00000298229	NM_001567.3	67	caC/caG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	75	344	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	93	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	80	375	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534325	63534325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	20	791	0	ENST00000307078.5:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000307078	NM_004655.3	399	cGa/cAa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209116263	209116263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	12	257	0	ENST00000345146.2:c.13delA	p.Ile5SerfsTer7	p.I5Sfs*7	ENST00000345146	NM_005896.2	5	Atc/tc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822563	72822564	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	33	607	0	ENST00000268489.5:c.9609_9611dupGCA	p.Gln3204dup	p.Q3204dup	ENST00000268489	NM_006885.3	3204	caa/caGCAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	40	450	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026105	71026105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	28	333	0	ENST00000318789.4:c.1517C>T	p.Ala506Val	p.A506V	ENST00000318789	NM_032682.5	506	gCg/gTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	96	643	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265522	152265522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	66	564	0	ENST00000206249.3:c.975del	p.Ile326TyrfsTer17	p.I326Yfs*17	ENST00000206249	NM_000125.3	325	ccG/cc																																																																														
MST1	4485	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	10	46	2	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	19	438	1	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101259	27101259	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	18	625	0	ENST00000324856.7:c.4541delC	p.Thr1514ArgfsTer13	p.T1514Rfs*13	ENST00000324856	NM_006015.4	1514	aCg/ag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38967452	38967452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	38	347	0	ENST00000357387.3:c.1138C>T	p.Arg380Cys	p.R380C	ENST00000357387	NM_152756.3	380	Cgt/Tgt																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003784	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	81	547	0	ENST00000558401.1:c.41_44delCTCT	p.Ser14PhefsTer29	p.S14Ffs*29	ENST00000558401	NM_004048.2	13	CTCTct/ct																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	13	529	0	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434595	110434595	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	154	662	0	ENST00000375856.3:c.3806A>C	p.Gln1269Pro	p.Q1269P	ENST00000375856	NM_003749.2	1269	cAg/cCg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741839	17741840	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	17	207	0	ENST00000250003.3:c.515dup	p.Gly173TrpfsTer105	p.G173Wfs*105	ENST00000250003	NM_002478.4	170	-/C																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819743	81819743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	22	650	0	ENST00000359376.3:c.149G>A	p.Arg50Gln	p.R50Q	ENST00000359376	NM_002661.3	50	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	14	851	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
B2M	567	MSKCC	GRCh37	15	45007794	45007797	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	43	445	0	ENST00000558401.1:c.244_247del	p.Phe82IlefsTer20	p.F82Ifs*20	ENST00000558401	NM_004048.2	81	TCTTtc/tc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931858	68931858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	36	610	0	ENST00000288368.4:c.291del	p.Glu98AsnfsTer42	p.E98Nfs*42	ENST00000288368	NM_024870.2	96	caC/ca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	46	931	3	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244967	46244967	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	67	579	1	ENST00000334344.6:c.3065delC	p.Pro1022HisfsTer38	p.P1022Hfs*38	ENST00000334344	NM_152641.2	1021	Ccc/cc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	37	494	1	ENST00000262189.6:c.8389_8390del	p.Lys2797GlyfsTer11	p.K2797Gfs*11	ENST00000262189	NM_170606.2	2797	AAg/g																																																																														
SRC	6714	MSKCC	GRCh37	20	36026125	36026125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	87	936	1	ENST00000358208.4:c.727C>T	p.Arg243Cys	p.R243C	ENST00000358208		243	Cgc/Tgc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103666	47103666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	10	364	2	ENST00000409792.3:c.6280del	p.Arg2094GlyfsTer53	p.R2094Gfs*53	ENST00000409792	NM_014159.6	2094	Agg/gg																																																																														
PARK2	0	MSKCC	GRCh37	6	162864377	162864377	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75860381		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	75	470	0	ENST00000366898.1:c.136G>A	p.Ala46Thr	p.A46T	ENST00000366898	NM_004562.2	46	Gca/Aca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436060	49436060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	51	622	1	ENST00000301067.7:c.5921C>T	p.Thr1974Met	p.T1974M	ENST00000301067	NM_003482.3	1974	aCg/aTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55955043	55955043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	14	449	0	ENST00000263923.4:c.3502G>A	p.Ala1168Thr	p.A1168T	ENST00000263923	NM_002253.2	1168	Gct/Act																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217225	11217225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	16	541	2	ENST00000361445.4:c.4453G>A	p.Glu1485Lys	p.E1485K	ENST00000361445	NM_004958.3	1485	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346113	89346114	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	12	251	1	ENST00000301030.4:c.6836_6837del	p.Val2279GlyfsTer16	p.V2279Gfs*16	ENST00000301030	NM_001256183.1	2279	gTG/g																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10277309	10277309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	88	811	2	ENST00000340748.4:c.808G>A	p.Val270Met	p.V270M	ENST00000340748		270	Gtg/Atg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038133	128038133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	63	421	0	ENST00000285398.2:c.1417G>A	p.Glu473Lys	p.E473K	ENST00000285398	NM_000122.1	473	Gaa/Aaa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805755	32805755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	37	831	0	ENST00000374899.4:c.256del	p.Ala86ProfsTer34	p.A86Pfs*34	ENST00000374899	NM_018833.2	86	Gcc/cc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332177	70332177	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	20	259	0	ENST00000373644.4:c.82C>T	p.Arg28Ter	p.R28*	ENST00000373644	NM_030625.2	28	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114905837	114905837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	92	572	0	ENST00000543371.1:c.856G>A	p.Val286Ile	p.V286I	ENST00000543371	NM_001198531.1	286	Gtc/Atc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279509	123279509	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	25	663	0	ENST00000358487.5:c.923A>G	p.Tyr308Cys	p.Y308C	ENST00000358487	NM_000141.4	308	tAc/tGc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201496	67201496	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	52	875	1	ENST00000312629.5:c.941del	p.Gly314ValfsTer18	p.G314Vfs*18	ENST00000312629	NM_003952.2	313	Ggg/gg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77043842	77043842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	93	738	2	ENST00000356341.3:c.1484G>A	p.Arg495Gln	p.R495Q	ENST00000356341	NM_002576.4	495	cGg/cAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18478033	18478033	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	24	439	0	ENST00000266497.5:c.1272+1G>A		p.X424_splice	ENST00000266497		424																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18552656	18552656	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	14	588	0	ENST00000266497.5:c.2067C>A	p.Cys689Ter	p.C689*	ENST00000266497		689	tgC/tgA																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244605	46244605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	11	486	2	ENST00000334344.6:c.2699C>A	p.Pro900His	p.P900H	ENST00000334344	NM_152641.2	900	cCt/cAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748905	43748905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	24	864	0	ENST00000382044.4:c.1901C>T	p.Pro634Leu	p.P634L	ENST00000382044	NM_001141980.1	634	cCg/cTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2120491	2120491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	22	822	1	ENST00000219476.3:c.1751C>T	p.Thr584Met	p.T584M	ENST00000219476	NM_000548.3	584	aCg/aTg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641240	23641240	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	48	750	0	ENST00000261584.4:c.2235del	p.Ala746HisfsTer18	p.A746Hfs*18	ENST00000261584	NM_024675.3	745	aaA/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832034	72832034	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	14	616	0	ENST00000268489.5:c.4547A>T	p.Asp1516Val	p.D1516V	ENST00000268489	NM_006885.3	1516	gAc/gTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37871559	37871559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	113	843	1	ENST00000269571.5:c.1169C>T	p.Ala390Val	p.A390V	ENST00000269571		390	gCc/gTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868403	45868403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	64	874	0	ENST00000391945.4:c.374G>A	p.Arg125His	p.R125H	ENST00000391945	NM_000400.3	125	cGc/cAc																																																																														
RRAS	6237	MSKCC	GRCh37	19	50138892	50138892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	47	1180	2	ENST00000246792.3:c.598C>T	p.Pro200Ser	p.P200S	ENST00000246792	NM_006270.3	200	Ccg/Tcg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469534	25469534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	62	781	0	ENST00000264709.3:c.1234G>T	p.Gly412Trp	p.G412W	ENST00000264709	NM_175629.2	412	Ggg/Tgg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703581	47703581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	69	598	0	ENST00000233146.2:c.2081T>C	p.Phe694Ser	p.F694S	ENST00000233146	NM_000251.2	694	tTt/tCt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017730	31017730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	62	675	0	ENST00000375687.4:c.592G>A	p.Glu198Lys	p.E198K	ENST00000375687	NM_015338.5	198	Gag/Aag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960003	134960003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	31	427	0	ENST00000398015.3:c.2360C>A	p.Pro787His	p.P787H	ENST00000398015	NM_004441.4	787	cCt/cAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535424	66535424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	30	329	0	ENST00000273854.3:c.37C>T	p.Arg13Trp	p.R13W	ENST00000273854	NM_004439.5	13	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112128156	112128156	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	47	349	0	ENST00000257430.4:c.659del	p.Arg220LysfsTer73	p.R220Kfs*73	ENST00000257430	NM_000038.5	220	aGa/aa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048638	180048638	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	51	766	0	ENST00000261937.6:c.1924del	p.Arg642AlafsTer43	p.R642Afs*43	ENST00000261937	NM_182925.4	642	Cgc/gc																																																																														
STK19	8859	MSKCC	GRCh37	6	31946713	31946713	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145128680		P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	55	603	1	ENST00000375331.2:c.601G>A	p.Val201Ile	p.V201I	ENST00000375331	NM_004197.1	201	Gtc/Atc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505472	157505473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	85	447	0	ENST00000346085.5:c.3456dup	p.Glu1153Ter	p.E1153*	ENST00000346085	NM_020732.3	1151	-/T																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211145	55211145	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	12	407	0	ENST00000275493.2:c.388A>C	p.Thr130Pro	p.T130P	ENST00000275493	NM_005228.3	130	Acc/Ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	29	902	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	26	707	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	32	726	0	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	66	479	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356133	66356133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	92	571	0	ENST00000273854.3:c.1364G>A	p.Arg455Gln	p.R455Q	ENST00000273854	NM_004439.5	455	cGg/cAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691947	30691947	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	64	379	0	ENST00000359013.4:c.524C>G	p.Ser175Ter	p.S175*	ENST00000359013	NM_001024847.2	175	tCa/tGa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041022	47041022	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	157	826	0	ENST00000329236.7:c.1318C>T	p.Gln440Ter	p.Q440*	ENST00000329236	NM_001204466.1	440	Cag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779676	3779676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	185	855	0	ENST00000262367.5:c.5372C>T	p.Ser1791Leu	p.S1791L	ENST00000262367	NM_004380.2	1791	tCg/tTg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154356	2154356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	197	1071	1	ENST00000434045.2:c.572G>T	p.Arg191Leu	p.R191L	ENST00000434045	NM_001127598.1	191	cGt/cTt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262458	10262458	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	160	786	0	ENST00000340748.4:c.2037T>A	p.Ser679Arg	p.S679R	ENST00000340748		679	agT/agA																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24135874	24135874	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	85	495	0	ENST00000263121.7:c.361A>T	p.Arg121Trp	p.R121W	ENST00000263121	NM_003073.3	121	Agg/Tgg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665483	138665483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	132	619	0	ENST00000330315.3:c.82G>A	p.Glu28Lys	p.E28K	ENST00000330315	NM_023067.3	28	Gaa/Aaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356223	66356223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	140	672	0	ENST00000273854.3:c.1274C>G	p.Ser425Cys	p.S425C	ENST00000273854	NM_004439.5	425	tCt/tGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874395	151874395	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	162	477	0	ENST00000262189.6:c.8143G>T	p.Glu2715Ter	p.E2715*	ENST00000262189	NM_170606.2	2715	Gaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528636	8528636	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	66	460	0	ENST00000356435.5:c.496G>C	p.Val166Leu	p.V166L	ENST00000356435		166	Gtg/Ctg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1274	446	767	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480538	123480538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	128	638	0	ENST00000371139.4:c.46G>A	p.Gly16Ser	p.G16S	ENST00000371139	NM_001114937.2	16	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578458	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	1053	957	0	ENST00000269305.4:c.472dup	p.Arg158ProfsTer23	p.R158Pfs*23	ENST00000269305	NM_001126112.2	158	cgc/cCgc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249417	110249436	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTTCCCCTCTTTGGCTTG	GTCTTCCCCTCTTTGGCTTG	-			P-0046496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	386	1153	0	ENST00000374672.4:c.1137_1156del	p.Lys380IlefsTer13	p.K380Ifs*13	ENST00000374672	NM_004235.4	379	ccCAAGCCAAAGAGGGGAAGACga/ccga																																																																														
RB1	5925	MSKCC	GRCh37	13	48934155	48934155	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0046497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	178	312	0	ENST00000267163.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000267163	NM_000321.2	204	Gaa/Taa																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649626	48649626	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	147	1004	0	ENST00000376670.3:c.110G>C	p.Gly37Ala	p.G37A	ENST00000376670	NM_002049.3	37	gGg/gCg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	14	435	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	166	335	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	37	527	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
NUP93	9688	MSKCC	GRCh37	16	56855497	56855497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	77	313	1	ENST00000308159.5:c.646G>A	p.Asp216Asn	p.D216N	ENST00000308159	NM_014669.4	216	Gat/Aat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125789	47125789	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	92	287	1	ENST00000409792.3:c.5481G>A	p.Trp1827Ter	p.W1827*	ENST00000409792	NM_014159.6	1827	tgG/tgA																																																																														
WHSC1	0	MSKCC	GRCh37	4	1978223	1978223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	156	542	0	ENST00000382891.5:c.3643G>C	p.Glu1215Gln	p.E1215Q	ENST00000382891	NM_133335.3	1215	Gag/Cag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151654	55151654	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	101	406	0	ENST00000257290.5:c.2439+1G>C		p.X813_splice	ENST00000257290	NM_006206.4	813																																																																															
TET2	54790	MSKCC	GRCh37	4	106155923	106155923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	74	320	0	ENST00000380013.4:c.824A>G	p.Asn275Ser	p.N275S	ENST00000380013	NM_001127208.2	275	aAt/aGt																																																																														
CCND3	896	MSKCC	GRCh37	6	41903701	41903701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	138	637	0	ENST00000372991.4:c.856G>T	p.Asp286Tyr	p.D286Y	ENST00000372991	NM_001760.3	286	Gat/Tat																																																																														
BTK	695	MSKCC	GRCh37	X	100612528	100612528	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	105	439	0	ENST00000308731.7:c.1146G>C	p.Lys382Asn	p.K382N	ENST00000308731	NM_000061.2	382	aaG/aaC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0046527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	157	400	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	306	476	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	273	421	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16265256	16265256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	230	428	0	ENST00000375759.3:c.10748G>A	p.Arg3583His	p.R3583H	ENST00000375759	NM_015001.2	3583	cGt/cAt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864994	57864994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1946	312	579	0	ENST00000228682.2:c.2471C>T	p.Ser824Phe	p.S824F	ENST00000228682	NM_005269.2	824	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	357	707	0	ENST00000269305.4:c.314G>A	p.Gly105Asp	p.G105D	ENST00000269305	NM_001126112.2	105	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	144	649	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	42	199	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	77	392	1	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400932	72400932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	141	310	0	ENST00000357731.5:c.239C>T	p.Ala80Val	p.A80V	ENST00000357731	NM_173808.2	80	gCg/gTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118950	70118950	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	364	679	0	ENST00000245479.2:c.522C>A	p.Tyr174Ter	p.Y174*	ENST00000245479	NM_000346.3	174	taC/taA																																																																														
BARD1	580	MSKCC	GRCh37	2	215646155	215646155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	252	388	0	ENST00000260947.4:c.443G>T	p.Ser148Ile	p.S148I	ENST00000260947	NM_000465.2	148	aGc/aTc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795030	242795030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	268	805	1	ENST00000334409.5:c.179C>T	p.Ser60Leu	p.S60L	ENST00000334409	NM_005018.2	60	tCg/tTg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163603	32163603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	127	498	0	ENST00000375023.3:c.5623G>A	p.Ala1875Thr	p.A1875T	ENST00000375023	NM_004557.3	1875	Gct/Act																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622162	1622162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	90	952	0	ENST00000344749.5:c.713C>T	p.Pro238Leu	p.P238L	ENST00000344749	NM_001136139.2	238	cCc/cTc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372040	45372040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	30	360	0	ENST00000262160.6:c.1129C>T	p.Pro377Ser	p.P377S	ENST00000262160	NM_005901.5	377	Cca/Tca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686267	117686267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	38	305	0	ENST00000368508.3:c.3074G>A	p.Gly1025Glu	p.G1025E	ENST00000368508	NM_002944.2	1025	gGa/gAa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58701074	58701074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	52	572	0	ENST00000305921.3:c.665C>T	p.Pro222Leu	p.P222L	ENST00000305921	NM_003620.3	222	cCc/cTc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136004	64136004	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	85	985	0	ENST00000334205.4:c.1265T>G	p.Phe422Cys	p.F422C	ENST00000334205	NM_003942.2	422	tTt/tGt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306761	41306761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			587	45	523	0	ENST00000373198.4:c.898G>T	p.Val300Leu	p.V300L	ENST00000373198	NM_133170.3	300	Gtg/Ttg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445230	49445230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201896284		P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1230	89	1006	0	ENST00000301067.7:c.2236C>T	p.Arg746Trp	p.R746W	ENST00000301067	NM_003482.3	746	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579312	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			634	80	597	1	ENST00000269305.4:c.375_375+1delinsAA		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866441	42866441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1227	108	901	0	ENST00000398585.3:c.191C>T	p.Pro64Leu	p.P64L	ENST00000398585	NM_001135099.1	64	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	32	417	0				ENST00000310581	NM_198253.2																																																																																
STK19	8859	MSKCC	GRCh37	6	31940093	31940093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	87	801	0	ENST00000375331.2:c.235G>A	p.Glu79Lys	p.E79K	ENST00000375331	NM_004197.1	79	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16263863	16263864	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			873	59	695	1	ENST00000375759.3:c.10232_10233delinsAA	p.Arg3411Lys	p.R3411K	ENST00000375759	NM_015001.2	3411	aGG/aAA																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46532596	46532596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	29	260	0	ENST00000262741.5:c.482C>T	p.Ser161Phe	p.S161F	ENST00000262741	NM_003629.3	161	tCc/tTc																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551637	150551637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			734	59	587	0	ENST00000369026.2:c.370G>A	p.Glu124Lys	p.E124K	ENST00000369026	NM_021960.4	124	Gag/Aag																																																																														
RET	5979	MSKCC	GRCh37	10	43606815	43606816	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	83	928	2	ENST00000355710.3:c.1424_1425delinsAA	p.Arg475Gln	p.R475Q	ENST00000355710	NM_020975.4	475	cGG/cAA																																																																														
RET	5979	MSKCC	GRCh37	10	43615126	43615126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	104	930	0	ENST00000355710.3:c.2540C>T	p.Thr847Ile	p.T847I	ENST00000355710	NM_020975.4	847	aCc/aTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342599	118342599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	21	187	0	ENST00000534358.1:c.725C>T	p.Ser242Leu	p.S242L	ENST00000534358	NM_005933.3	242	tCa/tTa																																																																														
CBL	867	MSKCC	GRCh37	11	119155963	119155963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			896	77	658	0	ENST00000264033.4:c.1628C>T	p.Pro543Leu	p.P543L	ENST00000264033	NM_005188.3	543	cCa/cTa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748789	43748790	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			920	89	695	0	ENST00000382044.4:c.2016_2017delinsTT	p.Pro673Ser	p.P673S	ENST00000382044	NM_001141980.1	672	atCCct/atTTct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934839	9934839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	36	410	0	ENST00000330684.3:c.1451A>T	p.Lys484Met	p.K484M	ENST00000330684	NM_001134407.1	484	aAg/aTg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23649442	23649442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	35	218	0	ENST00000261584.4:c.57G>C	p.Glu19Asp	p.E19D	ENST00000261584	NM_024675.3	19	gaG/gaC																																																																														
CBFB	865	MSKCC	GRCh37	16	67132631	67132631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	43	462	0	ENST00000412916.2:c.514C>T	p.Pro172Ser	p.P172S	ENST00000412916		172	Cct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29687598	29687598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	55	484	0	ENST00000358273.4:c.8254G>A	p.Glu2752Lys	p.E2752K	ENST00000358273	NM_001042492.2	2752	Gaa/Aaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245092	41245092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			916	77	638	0	ENST00000357654.3:c.2456C>T	p.Ser819Phe	p.S819F	ENST00000357654	NM_007294.3	819	tCc/tTc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39584495	39584496	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	33	264	0	ENST00000262039.4:c.1160_1161delinsTT	p.Ala387Val	p.A387V	ENST00000262039	NM_002647.2	387	gCC/gTT																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96919719	96919719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			659	52	560	0	ENST00000258439.3:c.544G>A	p.Gly182Arg	p.G182R	ENST00000258439	NM_001193304.2	182	Gga/Aga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164277	47164277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	28	276	0	ENST00000409792.3:c.1849C>T	p.Pro617Ser	p.P617S	ENST00000409792	NM_014159.6	617	Cca/Tca																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445016	89445016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	41	354	0	ENST00000336596.2:c.1336G>A	p.Asp446Asn	p.D446N	ENST00000336596	NM_005233.5	446	Gat/Aat																																																																														
WHSC1	0	MSKCC	GRCh37	4	1961237	1961237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	52	435	0	ENST00000382891.5:c.3025G>A	p.Asp1009Asn	p.D1009N	ENST00000382891	NM_133335.3	1009	Gat/Aat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638204	176638204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			806	65	583	1	ENST00000439151.2:c.2804C>T	p.Ser935Phe	p.S935F	ENST00000439151	NM_022455.4	935	tCt/tTt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066608	94066608	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	43	475	0	ENST00000369303.4:c.1151G>C	p.Ser384Thr	p.S384T	ENST00000369303	NM_004440.3	384	aGt/aCt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023060	150023060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			746	65	599	0	ENST00000253339.5:c.203C>T	p.Pro68Leu	p.P68L	ENST00000253339		68	cCa/cTa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148515111	148515111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	58	472	0	ENST00000320356.2:c.1098C>A	p.Asn366Lys	p.N366K	ENST00000320356	NM_004456.4	366	aaC/aaA																																																																														
LYN	4067	MSKCC	GRCh37	8	56912066	56912066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			840	72	560	0	ENST00000519728.1:c.1294C>T	p.Leu432Phe	p.L432F	ENST00000519728	NM_002350.3	432	Ctc/Ttc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220410	98220410	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			604	65	615	0	ENST00000331920.6:c.3053G>A	p.Trp1018Ter	p.W1018*	ENST00000331920	NM_000264.3	1018	tGg/tAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76874407	76874407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	50	182	0	ENST00000373344.5:c.5315C>T	p.Ser1772Phe	p.S1772F	ENST00000373344	NM_000489.3	1772	tCc/tTc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751513	57751513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	42	347	0	ENST00000274289.3:c.1478C>T	p.Pro493Leu	p.P493L	ENST00000274289	NM_006622.3	493	cCc/cTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517996	176517996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			939	81	749	0	ENST00000292408.4:c.494G>A	p.Gly165Glu	p.G165E	ENST00000292408	NM_213647.1	165	gGg/gAg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043963	180043963	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			855	73	774	0	ENST00000261937.6:c.3033G>C	p.Met1011Ile	p.M1011I	ENST00000261937	NM_182925.4	1011	atG/atC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	8	528	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	480	350	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			726	503	754	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			749	433	739	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
NF2	4771	MSKCC	GRCh37	22	30061031	30061031	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	17	371	0	ENST00000338641.4:c.863C>G	p.Ser288Ter	p.S288*	ENST00000338641	NM_000268.3	288	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			757	447	751	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251620	212251620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	30	358	0	ENST00000342788.4:c.3439G>A	p.Glu1147Lys	p.E1147K	ENST00000342788	NM_005235.2	1147	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	49047519	49047519	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			18	47	255	0	ENST00000267163.4:c.2513C>G	p.Ser838Ter	p.S838*	ENST00000267163	NM_000321.2	838	tCa/tGa																																																																														
CDH1	999	MSKCC	GRCh37	16	68772254	68772254	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	110	960	1	ENST00000261769.5:c.103G>T	p.Glu35Ter	p.E35*	ENST00000261769	NM_004360.3	35	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434618	49434618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1398	123	937	0	ENST00000301067.7:c.6935C>T	p.Ser2312Leu	p.S2312L	ENST00000301067	NM_003482.3	2312	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579563	7579563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			747	407	754	0	ENST00000269305.4:c.124G>T	p.Asp42Tyr	p.D42Y	ENST00000269305	NM_001126112.2	42	Gat/Tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1468	122	967	0	ENST00000301067.7:c.7061C>T	p.Pro2354Leu	p.P2354L	ENST00000301067	NM_003482.3	2354	cCt/cTt																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519938	66519938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	203	323	0	ENST00000358598.2:c.421C>A	p.Leu141Ile	p.L141I	ENST00000358598	NM_212471.2	141	Ctt/Att																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349205	15349205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	38	366	0	ENST00000263377.2:c.4072G>C	p.Glu1358Gln	p.E1358Q	ENST00000263377	NM_058243.2	1358	Gaa/Caa																																																																														
ALK	238	MSKCC	GRCh37	2	30143514	30143514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	29	275	0	ENST00000389048.3:c.12C>G	p.Ile4Met	p.I4M	ENST00000389048	NM_004304.4	4	atC/atG																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288946	212288946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	19	376	0	ENST00000342788.4:c.2800G>C	p.Glu934Gln	p.E934Q	ENST00000342788	NM_005235.2	934	Gag/Cag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651987	36651988	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			930	523	855	0	ENST00000244741.5:c.110_111dup	p.Met38Ter	p.M38*	ENST00000244741	NM_000389.4	37	cta/cTAta																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652250	36652251	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGC			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			819	487	742	0	ENST00000244741.5:c.373_376dup	p.Gln126ArgfsTer4	p.Q126Rfs*4	ENST00000244741	NM_000389.4	124	-/GAGC																																																																														
SYK	6850	MSKCC	GRCh37	9	93640016	93640016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	31	309	0	ENST00000375746.1:c.1345G>C	p.Glu449Gln	p.E449Q	ENST00000375746	NM_001174167.1	449	Gag/Cag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923064	39923064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			672	65	334	0	ENST00000378444.4:c.3644G>A	p.Arg1215Lys	p.R1215K	ENST00000378444	NM_001123385.1	1215	aGa/aAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937678	76937678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	22	193	0	ENST00000373344.5:c.3070G>C	p.Glu1024Gln	p.E1024Q	ENST00000373344	NM_000489.3	1024	Gaa/Caa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938716	76938716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	49	239	0	ENST00000373344.5:c.2032G>T	p.Asp678Tyr	p.D678Y	ENST00000373344	NM_000489.3	678	Gat/Tat																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748174	72748174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	185	343	0	ENST00000357731.5:c.4G>A	p.Asp2Asn	p.D2N	ENST00000357731	NM_173808.2	2	Gac/Aac																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727571	66727571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	29	353	0	ENST00000307102.5:c.287G>T	p.Arg96Ile	p.R96I	ENST00000307102	NM_002755.3	96	aGa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	423	862	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53231106	53231106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	165	275	0	ENST00000375401.3:c.1796G>T	p.Arg599Leu	p.R599L	ENST00000375401	NM_004187.3	599	cGt/cTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215376	41215376	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	164	330	0	ENST00000357654.3:c.5167A>T	p.Ile1723Phe	p.I1723F	ENST00000357654	NM_007294.3	1723	Att/Ttt																																																																														
WT1	7490	MSKCC	GRCh37	11	32456320	32456320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			923	183	745	1	ENST00000332351.3:c.572G>T	p.Gly191Val	p.G191V	ENST00000332351	NM_024426.4	191	gGc/gTc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661605	227661605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	313	756	0	ENST00000305123.5:c.1850C>T	p.Pro617Leu	p.P617L	ENST00000305123	NM_005544.2	617	cCa/cTa																																																																														
ATR	545	MSKCC	GRCh37	3	142204000	142204000	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	79	297	0	ENST00000350721.4:c.6203T>C	p.Ile2068Thr	p.I2068T	ENST00000350721	NM_001184.3	2068	aTa/aCa																																																																														
ATR	545	MSKCC	GRCh37	3	142274743	142274743	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			156	241	242	0	ENST00000350721.4:c.2317A>T	p.Lys773Ter	p.K773*	ENST00000350721	NM_001184.3	773	Aaa/Taa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322873	31322915	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCTTCCCTACCTGAACTCTTCCTCCTACACATCACAGCAGCG	CCCTTCCCTACCTGAACTCTTCCTCCTACACATCACAGCAGCG	-			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	151	490	0	ENST00000412585.2:c.981_1012+11del		p.X327_splice	ENST00000412585	NM_005514.6	327																																																																															
SMO	6608	MSKCC	GRCh37	7	128850814	128850814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	74	531	0	ENST00000249373.3:c.1661G>A	p.Gly554Glu	p.G554E	ENST00000249373	NM_005631.4	554	gGg/gAg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5029907	5029907	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	127	285	0	ENST00000381652.3:c.350+1G>A		p.X117_splice	ENST00000381652	NM_004972.3	117																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1331479	1331479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	149	540	0	ENST00000381566.1:c.49G>T	p.Gly17Cys	p.G17C	ENST00000381566		17	Ggc/Tgc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20148681	20148681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	88	161	0	ENST00000379607.5:c.382G>A	p.Glu128Lys	p.E128K	ENST00000379607	NM_001412.3	128	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	765	448	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420108	49420108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	439	491	0	ENST00000301067.7:c.15641G>T	p.Arg5214Leu	p.R5214L	ENST00000301067	NM_003482.3	5214	cGc/cTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133263871	133263871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	912	287	0	ENST00000320574.5:c.31G>T	p.Ala11Ser	p.A11S	ENST00000320574	NM_006231.2	11	Gcg/Tcg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827946	72827946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	426	586	0	ENST00000268489.5:c.8635G>C	p.Ala2879Pro	p.A2879P	ENST00000268489	NM_006885.3	2879	Gcc/Ccc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89383373	89383373	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	638	665	0	ENST00000301030.4:c.55A>T	p.Ser19Cys	p.S19C	ENST00000301030	NM_001256183.1	19	Agc/Tgc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63531788	63531788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	374	491	0	ENST00000307078.5:c.2193G>T	p.Gln731His	p.Q731H	ENST00000307078	NM_004655.3	731	caG/caT																																																																														
CIC	23152	MSKCC	GRCh37	19	42799216	42799216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1309	852	745	0	ENST00000575354.2:c.4700G>T	p.Gly1567Val	p.G1567V	ENST00000575354	NM_015125.3	1567	gGc/gTc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148506471	148506471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	99	232	0	ENST00000320356.2:c.2041G>T	p.Asp681Tyr	p.D681Y	ENST00000320356	NM_004456.4	681	Gat/Tat																																																																														
KLF4	9314	MSKCC	GRCh37	9	110251218	110251218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	1604	710	0	ENST00000374672.4:c.119C>T	p.Pro40Leu	p.P40L	ENST00000374672	NM_004235.4	40	cCg/cTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411488	63411488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1419	477	719	0	ENST00000330258.3:c.1679G>T	p.Arg560Leu	p.R560L	ENST00000330258	NM_152424.3	560	cGg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	41	250	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0046434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	157	727	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041244	47041244	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	115	345	0	ENST00000329236.7:c.1438C>T	p.Gln480Ter	p.Q480*	ENST00000329236	NM_001204466.1	480	Cag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660493	67660493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	63	266	0	ENST00000264010.4:c.1393C>T	p.Gln465Ter	p.Q465*	ENST00000264010	NM_006565.3	465	Caa/Taa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78704465	78704465	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	67	356	0	ENST00000306801.3:c.613T>A	p.Ser205Thr	p.S205T	ENST00000306801	NM_020761.2	205	Tcc/Acc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	505	756	0	ENST00000171111.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000171111	NM_203500.1	470	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	217	468	0	ENST00000269305.4:c.96+1G>A		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109668	115109668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	555	811	0	ENST00000257566.3:c.2210G>T	p.Arg737Met	p.R737M	ENST00000257566	NM_016569.3	737	aGg/aTg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876458	35876458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	112	555	0	ENST00000303115.3:c.1250C>A	p.Pro417His	p.P417H	ENST00000303115	NM_002185.3	417	cCt/cAt																																																																														
RAD51	5888	MSKCC	GRCh37	15	41020916	41020916	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	112	448	0	ENST00000267868.3:c.538C>G	p.Leu180Val	p.L180V	ENST00000267868	NM_002875.4	180	Ctc/Gtc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40876429	40876429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	218	440	0	ENST00000428826.2:c.260G>T	p.Ser87Ile	p.S87I	ENST00000428826		87	aGc/aTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145667	11145667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	424	882	0	ENST00000344626.4:c.4032del	p.Ser1345ArgfsTer13	p.S1345Rfs*13	ENST00000344626	NM_003072.3	1343	ctC/ct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210704	36210704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	63	813	2	ENST00000222270.7:c.455G>A	p.Arg152Gln	p.R152Q	ENST00000222270	NM_014727.1	152	cGg/cAg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206764	36206764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	178	575	0	ENST00000300305.3:c.748C>G	p.Arg250Gly	p.R250G	ENST00000300305		250	Cgt/Ggt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056989	180056989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	220	962	1	ENST00000261937.6:c.630G>T	p.Trp210Cys	p.W210C	ENST00000261937	NM_182925.4	210	tgG/tgT																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553158	106553158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	136	588	1	ENST00000369096.4:c.1123G>A	p.Ala375Thr	p.A375T	ENST00000369096	NM_001198.3	375	Gct/Act																																																																														
ROS1	6098	MSKCC	GRCh37	6	117645539	117645539	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	85	403	0	ENST00000368508.3:c.5597T>C	p.Ile1866Thr	p.I1866T	ENST00000368508	NM_002944.2	1866	aTt/aCt																																																																														
ABL1	25	MSKCC	GRCh37	9	133760723	133760723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	240	862	0	ENST00000318560.5:c.3046C>T	p.Arg1016Cys	p.R1016C	ENST00000318560	NM_005157.4	1016	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	42	239	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	125	321	0				ENST00000310581	NM_198253.2																																																																																
MTOR	2475	MSKCC	GRCh37	1	11272443	11272443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	241	395	0	ENST00000361445.4:c.3487C>G	p.Leu1163Val	p.L1163V	ENST00000361445	NM_004958.3	1163	Ctg/Gtg																																																																														
KIT	3815	MSKCC	GRCh37	4	55599333	55599333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	61	301	0	ENST00000288135.5:c.2459A>G	p.Asp820Gly	p.D820G	ENST00000288135	NM_000222.2	820	gAt/gGt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131927650	131927650	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	58	202	0	ENST00000265335.6:c.1722del	p.Lys574AsnfsTer24	p.K574Nfs*24	ENST00000265335		573	Aaa/aa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593587	55593646	+	inframe_deletion	In_Frame_Del	DEL	CATGTATGAAGTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACAT	CATGTATGAAGTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACAT	-			P-0046440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	91	253	0	ENST00000288135.5:c.1653_1712del	p.Met552_Ile571del	p.M552_I571del	ENST00000288135	NM_000222.2	551	ccCATGTATGAAGTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATa/cca																																																																														
NF1	4763	MSKCC	GRCh37	17	29527439	29527439	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	49	300	0	ENST00000358273.4:c.889-1G>A		p.X297_splice	ENST00000358273	NM_001042492.2	297																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100329	27100377	+	frameshift_variant	Frame_Shift_Del	DEL	CACCCCTTCTGGCAGCCCCTTCCCCAGCCAGCAGACTACAATGTATCAA	CACCCCTTCTGGCAGCCCCTTCCCCAGCCAGCAGACTACAATGTATCAA	-			P-0046452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	121	764	0	ENST00000324856.7:c.4043_4091del	p.Thr1348SerfsTer117	p.T1348Sfs*117	ENST00000324856	NM_006015.4	1347	ggCACCCCTTCTGGCAGCCCCTTCCCCAGCCAGCAGACTACAATGTATCAA/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1307	136	1080	0	ENST00000269305.4:c.440T>C	p.Val147Ala	p.V147A	ENST00000269305	NM_001126112.2	147	gTt/gCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	19	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	36	556	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	68	365	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	189	622	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0046458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	75	823	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952019	178952019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	10	294	0	ENST00000263967.3:c.3074C>G	p.Thr1025Ser	p.T1025S	ENST00000263967	NM_006218.2	1025	aCc/aGc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0046463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	33	237	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157834	106157834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	67	244	0	ENST00000380013.4:c.2735C>T	p.Ala912Val	p.A912V	ENST00000380013	NM_001127208.2	912	gCg/gTg																																																																														
CCND2	894	MSKCC	GRCh37	12	4383253	4383253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	164	594	0	ENST00000261254.3:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000261254	NM_001759.3	16	cGg/cAg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108093	30108093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	143	454	0	ENST00000331968.5:c.714G>T	p.Glu238Asp	p.E238D	ENST00000331968	NM_002742.2	238	gaG/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577529	7577530	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGGCC			P-0046464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	400	674	0	ENST00000269305.4:c.746_751dup	p.Arg249_Pro250dup	p.R249_P250dup	ENST00000269305	NM_001126112.2	249	atc/aGGCCCAtc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967921	93967921	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	114	457	0	ENST00000369303.4:c.2006T>G	p.Val669Gly	p.V669G	ENST00000369303	NM_004440.3	669	gTt/gGt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120464	94120464	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	98	332	0	ENST00000369303.4:c.587T>G	p.Val196Gly	p.V196G	ENST00000369303	NM_004440.3	196	gTt/gGt																																																																														
LYN	4067	MSKCC	GRCh37	8	56864626	56864626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	166	551	0	ENST00000519728.1:c.589C>T	p.Pro197Ser	p.P197S	ENST00000519728	NM_002350.3	197	Cca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0046467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	41	328	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	81	771	1	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575151	48575151	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	34	284	0	ENST00000342988.3:c.345T>G	p.Cys115Trp	p.C115W	ENST00000342988	NM_005359.5	115	tgT/tgG																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794464	242794464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1227	97	1016	0	ENST00000334409.5:c.478C>G	p.Pro160Ala	p.P160A	ENST00000334409	NM_005018.2	160	Ccc/Gcc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020351	69020351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201443824		P-0046467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	77	319	0	ENST00000288368.4:c.2723G>A	p.Arg908His	p.R908H	ENST00000288368	NM_024870.2	908	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	769	574	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243668570	243668570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	80	283	0	ENST00000263826.5:c.1421C>T	p.Ser474Phe	p.S474F	ENST00000263826	NM_005465.4	474	tCt/tTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACT			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	4166	539	0	ENST00000275493.2:c.2310_2311insTAC	p.Asp770_Asn771insTyr	p.D770_N771insY	ENST00000275493	NM_005228.3	770	gac/gACTac																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570311	87570311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	279	590	0	ENST00000277120.3:c.2051C>T	p.Ala684Val	p.A684V	ENST00000277120		684	gCg/gTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799333	88799333	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	185	411	0	ENST00000360948.2:c.52C>G	p.Leu18Val	p.L18V	ENST00000360948	NM_001012338.2	18	Ctg/Gtg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190717439	190717439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	93	254	1	ENST00000441310.2:c.758C>T	p.Ser253Leu	p.S253L	ENST00000441310	NM_000534.4	253	tCa/tTa																																																																														
TP63	8626	MSKCC	GRCh37	3	189608654	189608654	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	182	370	0	ENST00000264731.3:c.1729G>C	p.Glu577Gln	p.E577Q	ENST00000264731	NM_003722.4	577	Gag/Cag																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839894	27839894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	276	626	0	ENST00000328488.2:c.200C>T	p.Pro67Leu	p.P67L	ENST00000328488	NM_003533.2	67	cCt/cTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55269023	55269023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4647	454	523	0	ENST00000275493.2:c.3089C>T	p.Ser1030Leu	p.S1030L	ENST00000275493	NM_005228.3	1030	tCa/tTa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419049	419049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	15	425	1	ENST00000399788.2:c.3298G>A	p.Glu1100Lys	p.E1100K	ENST00000399788	NM_001042603.1	1100	Gaa/Aaa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16097825	16097825	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs73281920		P-0046470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	10	559	0	ENST00000268712.3:c.59A>C	p.Tyr20Ser	p.Y20S	ENST00000268712	NM_006311.3	20	tAt/tCt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554312	81554313	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTA			P-0046470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	10	314	0	ENST00000298171.2:c.332_333insTTA	p.Thr111_Arg112insTyr	p.T111_R112insY	ENST00000298171	NM_000369.2	111	acc/acTTAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29556463	29556463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	373	452	0	ENST00000358273.4:c.2835del	p.Phe945LeufsTer9	p.F945Lfs*9	ENST00000358273	NM_001042492.2	944	Ttt/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577083	7577084	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0046478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	857	1042	0	ENST00000269305.4:c.854_855del	p.Glu285GlyfsTer20	p.E285Gfs*20	ENST00000269305	NM_001126112.2	285	gAG/g																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56184150	56184150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	94	371	0	ENST00000399503.3:c.4355A>G	p.Glu1452Gly	p.E1452G	ENST00000399503	NM_005921.1	1452	gAa/gGa																																																																														
XIAP	331	MSKCC	GRCh37	X	123022529	123022529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	180	668	0	ENST00000355640.3:c.938G>T	p.Ser313Ile	p.S313I	ENST00000355640		313	aGt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	40	436	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	116	751	2	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
RB1	5925	MSKCC	GRCh37	13	48916851	48916851	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	64	295	0	ENST00000267163.4:c.380+1G>T		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0046480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	375	757	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533730	63533730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	101	635	1	ENST00000307078.5:c.1424C>T	p.Ser475Leu	p.S475L	ENST00000307078	NM_004655.3	475	tCg/tTg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72891512	72891512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	185	475	0	ENST00000325599.8:c.250C>T	p.His84Tyr	p.H84Y	ENST00000325599	NM_018130.2	84	Cat/Tat																																																																														
FYN	2534	MSKCC	GRCh37	6	112015709	112015709	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	97	481	0	ENST00000368678.4:c.1133T>A	p.Ile378Asn	p.I378N	ENST00000368678		378	aTc/aAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971183	21971183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	57	406	1	ENST00000304494.5:c.175G>A	p.Val59Met	p.V59M	ENST00000304494	NM_000077.4	59	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971183	21971183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	57	406	1	ENST00000304494.5:c.175G>A	p.Val59Met	p.V59M	ENST00000304494	NM_000077.4	59	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971183	21971183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	57	406	1	ENST00000304494.5:c.175G>A	p.Val59Met	p.V59M	ENST00000304494	NM_000077.4	59	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0046481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	55	359	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922695	44922695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	87	188	0	ENST00000377967.4:c.1556delG	p.Arg519HisfsTer29	p.R519Hfs*29	ENST00000377967	NM_021140.2	519	cGa/ca																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3860713	3860713	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	313	687	0	ENST00000262367.5:c.866del	p.Gly289GlufsTer5	p.G289Efs*5	ENST00000262367	NM_004380.2	289	gGa/ga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485809	57485809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	287	518	1	ENST00000371085.3:c.1110G>T	p.Glu370Asp	p.E370D	ENST00000371085	NM_000516.4	370	gaG/gaT																																																																														
EP300	2033	MSKCC	GRCh37	22	41568635	41568635	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	72	497	0	ENST00000263253.7:c.4585del	p.Arg1529GlufsTer12	p.R1529Efs*12	ENST00000263253	NM_001429.3	1529	Cga/ga																																																																														
ABL1	25	MSKCC	GRCh37	9	133760443	133760443	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	359	812	0	ENST00000318560.5:c.2767del	p.Ala923ProfsTer19	p.A923Pfs*19	ENST00000318560	NM_005157.4	922	gcG/gc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390905	139390908	+	frameshift_variant	Frame_Shift_Del	DEL	AGGT	AGGT	CTG			P-0046481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	565	1063	1	ENST00000277541.6:c.7283_7286delinsCAG	p.His2428ProfsTer7	p.H2428Pfs*7	ENST00000277541	NM_017617.3	2428	cACCTg/cCAGg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	202	420	0	ENST00000288135.5:c.1676T>C	p.Val559Ala	p.V559A	ENST00000288135	NM_000222.2	559	gTt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	512	812	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	557	605	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	245	435	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	91	342	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281904	39281904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	315	515	0	ENST00000402219.2:c.571G>A	p.Glu191Lys	p.E191K	ENST00000402219	NM_005633.3	191	Gaa/Aaa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213588	36213588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	265	1103	1	ENST00000222270.7:c.2690C>T	p.Pro897Leu	p.P897L	ENST00000222270	NM_014727.1	897	cCt/cTt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115266523	115266523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	179	576	0	ENST00000438362.2:c.1992G>T	p.Met664Ile	p.M664I	ENST00000438362	NM_001242891.1	664	atG/atT																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982427	201982427	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	286	820	0	ENST00000359651.3:c.805+1G>A		p.X269_splice	ENST00000359651		269																																																																															
AURKA	6790	MSKCC	GRCh37	20	54945715	54945715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	122	609	0	ENST00000312783.6:c.855G>C	p.Arg285Ser	p.R285S	ENST00000312783	NM_198436.1	285	agG/agC																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390161	89390161	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	126	391	0	ENST00000336596.2:c.910T>G	p.Cys304Gly	p.C304G	ENST00000336596	NM_005233.5	304	Tgc/Ggc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921346	178921346	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	146	527	0	ENST00000263967.3:c.828T>A	p.Cys276Ter	p.C276*	ENST00000263967	NM_006218.2	276	tgT/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	47	772	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	74	931	1	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467848	66467848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	21	381	0	ENST00000273854.3:c.421C>T	p.Pro141Ser	p.P141S	ENST00000273854	NM_004439.5	141	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	18	480	1				ENST00000310581	NM_198253.2																																																																																
CARD11	84433	MSKCC	GRCh37	7	2957001	2957001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	74	606	1	ENST00000396946.4:c.2626G>A	p.Glu876Lys	p.E876K	ENST00000396946	NM_032415.4	876	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81381514	81381514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	76	422	0	ENST00000222390.5:c.547G>A	p.Glu183Lys	p.E183K	ENST00000222390	NM_000601.4	183	Gaa/Aaa																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	66	965	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372442	55372442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	75	1042	0	ENST00000297316.4:c.1132C>T	p.Pro378Ser	p.P378S	ENST00000297316	NM_022454.3	378	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425644	49425644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	50	948	0	ENST00000301067.7:c.12844C>T	p.Arg4282Ter	p.R4282*	ENST00000301067	NM_003482.3	4282	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828186	72828186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	57	739	0	ENST00000268489.5:c.8395C>T	p.Leu2799Phe	p.L2799F	ENST00000268489	NM_006885.3	2799	Ctt/Ttt																																																																														
LYN	4067	MSKCC	GRCh37	8	56864641	56864641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	62	631	0	ENST00000519728.1:c.604C>T	p.Pro202Ser	p.P202S	ENST00000519728	NM_002350.3	202	Ccc/Tcc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2114342	2114342	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	56	906	1	ENST00000219476.3:c.1513C>T	p.Arg505Ter	p.R505*	ENST00000219476	NM_000548.3	505	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248362	212248362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	29	298	0	ENST00000342788.4:c.3905G>A	p.Arg1302Lys	p.R1302K	ENST00000342788	NM_005235.2	1302	aGa/aAa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981941	70981941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	64	975	1	ENST00000276594.2:c.155C>T	p.Pro52Leu	p.P52L	ENST00000276594	NM_024504.3	52	cCt/cTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539563	187539563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	38	411	0	ENST00000441802.2:c.8177G>A	p.Arg2726Gln	p.R2726Q	ENST00000441802	NM_005245.3	2726	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542414	187542414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	39	470	0	ENST00000441802.2:c.5326G>A	p.Glu1776Lys	p.E1776K	ENST00000441802	NM_005245.3	1776	Gaa/Aaa																																																																														
STK40	83931	MSKCC	GRCh37	1	36807505	36807505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200986219		P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	61	916	0	ENST00000373129.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000373129	NM_032017.1	387	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344357	118344357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	17	316	0	ENST00000534358.1:c.2483C>T	p.Ser828Leu	p.S828L	ENST00000534358	NM_005933.3	828	tCa/tTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974680	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	GG	GG	AA			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	140	619	0	ENST00000304494.5:c.147_148delinsTT	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	49	atCCag/atTTag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974680	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	GG	GG	AA			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	140	619	0	ENST00000304494.5:c.147_148delinsTT	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	49	atCCag/atTTag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249393	153249393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	49	608	0	ENST00000281708.4:c.1385C>T	p.Ser462Phe	p.S462F	ENST00000281708	NM_033632.3	462	tCc/tTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187854	11187854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	30	554	1	ENST00000361445.4:c.6043G>A	p.Glu2015Lys	p.E2015K	ENST00000361445	NM_004958.3	2015	Gag/Aag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120460290	120460303	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGTTGTCCTGCATG	TGTTGTCCTGCATG	-			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	36	537	0	ENST00000256646.2:c.6012_6025del	p.Asp2004GlufsTer16	p.D2004Efs*16	ENST00000256646	NM_024408.3	2004	gaCATGCAGGACAACAag/gaag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468055	120468056	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	31	876	3	ENST00000256646.2:c.4383_4384delinsTT	p.Pro1462Ser	p.P1462S	ENST00000256646	NM_024408.3	1461	aaCCcc/aaTTcc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097680	8097680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	26	480	0	ENST00000346208.3:c.62G>A	p.Gly21Glu	p.G21E	ENST00000346208		21	gGg/gAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431228	49431228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	58	736	0	ENST00000301067.7:c.9911C>T	p.Pro3304Leu	p.P3304L	ENST00000301067	NM_003482.3	3304	cCc/cTc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112893855	112893855	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	40	544	0	ENST00000351677.2:c.744G>A	p.Trp248Ter	p.W248*	ENST00000351677	NM_002834.3	248	tgG/tgA																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416689	121416689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	46	1027	0	ENST00000257555.6:c.118G>A	p.Gly40Arg	p.G40R	ENST00000257555		40	Gga/Aga																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023079	33023079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	33	511	0	ENST00000300177.4:c.188G>A	p.Gly63Glu	p.G63E	ENST00000300177	NM_001191322.1	63	gGg/gAg																																																																														
BLM	641	MSKCC	GRCh37	15	91358361	91358361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	33	538	0	ENST00000355112.3:c.4106C>T	p.Ser1369Phe	p.S1369F	ENST00000355112	NM_000057.2	1369	tCc/tTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633417	3633418	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	48	1118	2	ENST00000294008.3:c.4833_4834delinsAA	p.Asp1612Asn	p.D1612N	ENST00000294008	NM_032444.2	1611	gaGGac/gaAAac																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640247	3640247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	75	1192	0	ENST00000294008.3:c.3392C>T	p.Pro1131Leu	p.P1131L	ENST00000294008	NM_032444.2	1131	cCt/cTt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347635	89347635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	45	836	1	ENST00000301030.4:c.5315C>T	p.Ser1772Leu	p.S1772L	ENST00000301030	NM_001256183.1	1772	tCg/tTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347984	89347984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	72	1114	0	ENST00000301030.4:c.4966G>C	p.Glu1656Gln	p.E1656Q	ENST00000301030	NM_001256183.1	1656	Gag/Cag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40491346	40491347	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	59	673	0	ENST00000264657.5:c.453_454delinsTT	p.Arg152Trp	p.R152W	ENST00000264657	NM_139276.2	151	gtCCgg/gtTTgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436162	56436163	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	37	722	3	ENST00000407977.2:c.974_975delinsTT	p.Ser325Phe	p.S325F	ENST00000407977		325	tCC/tTT																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760709	59760709	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	84	695	0	ENST00000259008.2:c.3698A>C	p.Asn1233Thr	p.N1233T	ENST00000259008	NM_032043.2	1233	aAc/aCc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4102440	4102441	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	63	911	1	ENST00000262948.5:c.461_462delinsTT	p.Ser154Phe	p.S154F	ENST00000262948	NM_030662.3	154	tCC/tTT																																																																														
AXL	558	MSKCC	GRCh37	19	41743936	41743936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	71	1090	0	ENST00000301178.4:c.871C>T	p.Pro291Ser	p.P291S	ENST00000301178	NM_021913.4	291	Ccc/Tcc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868382	45868382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	73	909	0	ENST00000391945.4:c.395G>A	p.Gly132Glu	p.G132E	ENST00000391945	NM_000400.3	132	gGg/gAg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99204020	99204020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	25	382	0	ENST00000074304.5:c.2883C>A	p.Phe961Leu	p.F961L	ENST00000074304	NM_001134224.1	961	ttC/ttA																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374380	31374380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	38	754	0	ENST00000328111.2:c.379C>T	p.Arg127Trp	p.R127W	ENST00000328111	NM_006892.3	127	Cgg/Tgg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39658070	39658070	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	42	540	0	ENST00000361337.2:c.34-1G>A		p.X12_splice	ENST00000361337	NM_003286.2	12																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757432	40757432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	40	826	0	ENST00000373198.4:c.2866G>A	p.Asp956Asn	p.D956N	ENST00000373198	NM_133170.3	956	Gac/Aac																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42879900	42879900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	17	296	0	ENST00000398585.3:c.32G>T	p.Gly11Val	p.G11V	ENST00000398585	NM_001135099.1	11	gGg/gTg																																																																														
NF2	4771	MSKCC	GRCh37	22	30077492	30077492	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199669486		P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	23	420	0	ENST00000338641.4:c.1639G>A	p.Glu547Lys	p.E547K	ENST00000338641	NM_000268.3	547	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41537064	41537064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	26	318	0	ENST00000263253.7:c.1891C>T	p.His631Tyr	p.H631Y	ENST00000263253	NM_001429.3	631	Cac/Tac																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205025	128205025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	48	869	0	ENST00000341105.2:c.416C>T	p.Ser139Phe	p.S139F	ENST00000341105	NM_032638.4	139	tCt/tTt																																																																														
ATR	545	MSKCC	GRCh37	3	142177889	142177889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	36	474	0	ENST00000350721.4:c.7414G>A	p.Gly2472Arg	p.G2472R	ENST00000350721	NM_001184.3	2472	Ggg/Agg																																																																														
ATR	545	MSKCC	GRCh37	3	142215207	142215207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	22	227	0	ENST00000350721.4:c.5894C>T	p.Ser1965Phe	p.S1965F	ENST00000350721	NM_001184.3	1965	tCc/tTc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748164	41748165	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	30	552	1	ENST00000226382.2:c.604_605delinsTT	p.Pro202Phe	p.P202F	ENST00000226382	NM_003924.3	202	CCc/TTc																																																																														
FAM175A	0	MSKCC	GRCh37	4	84390293	84390293	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	38	527	0	ENST00000321945.7:c.488G>C	p.Arg163Thr	p.R163T	ENST00000321945	NM_139076.2	163	aGg/aCg																																																																														
RP11-461L13.2	0	MSKCC	GRCh37	4	153258961	153258962	+	splice_acceptor_variant,non_coding_transcript_exon_variant	Splice_Site	DNP	GG	GG	AA			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	32	286	0	ENST00000605147.1:n.84-1_84delinsAA		p.X28_splice	ENST00000605147		28																																																																															
FAT1	2195	MSKCC	GRCh37	4	187538943	187538943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs35931295		P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	34	557	0	ENST00000441802.2:c.8797C>T	p.Gln2933Ter	p.Q2933*	ENST00000441802	NM_005245.3	2933	Caa/Taa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671528	30671528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	73	954	1	ENST00000376406.3:c.5432G>A	p.Arg1811His	p.R1811H	ENST00000376406	NM_014641.2	1811	cGc/cAc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287215	33287215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	63	744	1	ENST00000374542.5:c.1882C>T	p.Pro628Ser	p.P628S	ENST00000374542	NM_001141970.1	628	Ccc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982084	93982084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	45	559	0	ENST00000369303.4:c.1381C>T	p.Leu461Phe	p.L461F	ENST00000369303	NM_004440.3	461	Ctt/Ttt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94129044	94129044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	34	404	1	ENST00000369303.4:c.16C>T	p.Arg6Trp	p.R6W	ENST00000369303	NM_004440.3	6	Cgg/Tgg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552813	106552814	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	43	735	0	ENST00000369096.4:c.778_779delinsTT	p.Pro260Phe	p.P260F	ENST00000369096	NM_001198.3	260	CCc/TTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677888	117677888	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	40	458	0	ENST00000368508.3:c.4045A>C	p.Lys1349Gln	p.K1349Q	ENST00000368508	NM_002944.2	1349	Aaa/Caa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704530	117704530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	47	481	0	ENST00000368508.3:c.2446G>T	p.Gly816Trp	p.G816W	ENST00000368508	NM_002944.2	816	Ggg/Tgg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527717	157527717	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	60	662	0	ENST00000346085.5:c.5442T>G	p.Ser1814Arg	p.S1814R	ENST00000346085	NM_020732.3	1814	agT/agG																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987359	2987360	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	45	694	1	ENST00000396946.4:c.69_70delinsAT	p.Trp23_Glu24delinsTer	p.W23_E24delins*	ENST00000396946	NM_032415.4	23	tgGGag/tgATag																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426861	6426861	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	48	537	0	ENST00000356142.4:c.54C>G	p.Cys18Trp	p.C18W	ENST00000356142	NM_018890.3	18	tgC/tgG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836311	151836311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	106	597	0	ENST00000262189.6:c.14494G>A	p.Asp4832Asn	p.D4832N	ENST00000262189	NM_170606.2	4832	Gac/Aac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860626	151860626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	72	707	0	ENST00000262189.6:c.10036C>A	p.Leu3346Ile	p.L3346I	ENST00000262189	NM_170606.2	3346	Ctc/Atc																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207363	29207363	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	31	530	0	ENST00000240100.2:c.433G>A	p.Gly145Ser	p.G145S	ENST00000240100	NM_001394.6	145	Ggc/Agc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317148	87317149	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TG	TG	-			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	43	468	0	ENST00000277120.3:c.287+2_287+3del		p.X96_splice	ENST00000277120		96																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412705	139412705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	124	982	0	ENST00000277541.6:c.1139C>G	p.Pro380Arg	p.P380R	ENST00000277541	NM_017617.3	380	cCc/cGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41568590	41568592	+	missense_variant	Missense_Mutation	ONP	GAA	GAA	AAG			P-0046486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	129	603	0	ENST00000263253.7:c.4540_4542delinsAAG	p.Glu1514Lys	p.E1514K	ENST00000263253	NM_001429.3	1514	GAA/AAG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	80	396	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0046487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	310	838	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63699963	63699963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	99	279	0	ENST00000279873.7:c.298G>A	p.Glu100Lys	p.E100K	ENST00000279873	NM_032199.2	100	Gaa/Aaa																																																																														
RET	5979	MSKCC	GRCh37	10	43595943	43595943	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	259	837	1	ENST00000355710.3:c.110G>T	p.Trp37Leu	p.W37L	ENST00000355710	NM_020975.4	37	tGg/tTg																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45795072	45795072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	245	591	0	ENST00000372115.3:c.1514G>A	p.Arg505Gln	p.R505Q	ENST00000372115	NM_001048171.1	505	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827166	72827166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	109	486	0	ENST00000268489.5:c.9415C>A	p.Pro3139Thr	p.P3139T	ENST00000268489	NM_006885.3	3139	Cca/Aca																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176516663	176516663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	60	758	1	ENST00000292408.4:c.60G>T	p.Leu20Phe	p.L20F	ENST00000292408	NM_213647.1	20	ttG/ttT																																																																														
JAK2	3717	MSKCC	GRCh37	9	5089788	5089788	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	34	237	0	ENST00000381652.3:c.2686G>T	p.Glu896Ter	p.E896*	ENST00000381652	NM_004972.3	896	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	48	336	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0046488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	257	578	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858020	152858020	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	201	374	0	ENST00000406277.2:c.595C>T	p.Gln199Ter	p.Q199*	ENST00000406277	NM_152274.4	199	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	55	353	1	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
STK11	6794	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	49	451	0	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813300	102813300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	47	426	0	ENST00000307046.8:c.389C>A	p.Pro130His	p.P130H	ENST00000307046	NM_001111285.1	130	cCc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436014	110436014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	62	662	0	ENST00000375856.3:c.2387G>T	p.Arg796Met	p.R796M	ENST00000375856	NM_003749.2	796	aGg/aTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42059251	42059251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	32	315	0	ENST00000219905.7:c.8971C>T	p.Pro2991Ser	p.P2991S	ENST00000219905	NM_001164273.1	2991	Cct/Tct																																																																														
NUP93	9688	MSKCC	GRCh37	16	56792488	56792488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	55	438	0	ENST00000308159.5:c.218A>G	p.His73Arg	p.H73R	ENST00000308159	NM_014669.4	73	cAc/cGc																																																																														
ALK	238	MSKCC	GRCh37	2	29474042	29474042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	59	707	0	ENST00000389048.3:c.2133C>A	p.Ser711Arg	p.S711R	ENST00000389048	NM_004304.4	711	agC/agA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306656	41306656	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	56	590	0	ENST00000373198.4:c.1003del	p.Ala335GlnfsTer5	p.A335Qfs*5	ENST00000373198	NM_133170.3	335	Gca/ca																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755688	57755688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	74	643	0	ENST00000274289.3:c.99G>T	p.Lys33Asn	p.K33N	ENST00000274289	NM_006622.3	33	aaG/aaT																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729729	41729729	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	57	484	0	ENST00000242208.4:c.800G>T	p.Gly267Val	p.G267V	ENST00000242208	NM_002192.2	267	gGg/gTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128846320	128846320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	51	546	1	ENST00000249373.3:c.1156G>T	p.Val386Leu	p.V386L	ENST00000249373	NM_005631.4	386	Gtg/Ttg																																																																														
TEK	7010	MSKCC	GRCh37	9	27212789	27212789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	63	683	0	ENST00000380036.4:c.2771C>A	p.Pro924Gln	p.P924Q	ENST00000380036	NM_000459.3	924	cCa/cAa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044477	47044477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	49	578	0	ENST00000329236.7:c.1740G>T	p.Trp580Cys	p.W580C	ENST00000329236	NM_001204466.1	580	tgG/tgT																																																																														
BTK	695	MSKCC	GRCh37	X	100630257	100630257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	45	303	1	ENST00000308731.7:c.16C>A	p.Leu6Met	p.L6M	ENST00000308731	NM_000061.2	6	Ctg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	66	119	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332868	152332868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	69	163	0	ENST00000206249.3:c.1174G>A	p.Val392Ile	p.V392I	ENST00000206249	NM_000125.3	392	Gtc/Atc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404305	139404305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	83	270	0	ENST00000277541.6:c.2849C>T	p.Ala950Val	p.A950V	ENST00000277541	NM_017617.3	950	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431049	49431049	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	69	243	0	ENST00000301067.7:c.10090C>T	p.Gln3364Ter	p.Q3364*	ENST00000301067	NM_003482.3	3364	Cag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930748	32930748	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0046515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	89	152	0	ENST00000380152.3:c.7617+2T>A		p.X2539_splice	ENST00000380152		2539																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	180	672	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	59	494	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	15	388	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	38	399	2	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	32	345	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95598962	95598962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	41	383	0	ENST00000343455.3:c.197C>A	p.Thr66Asn	p.T66N	ENST00000343455	NM_177438.2	66	aCt/aAt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799222	88799222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	43	530	0	ENST00000360948.2:c.163C>G	p.Pro55Ala	p.P55A	ENST00000360948	NM_001012338.2	55	Ccc/Gcc																																																																														
TEK	7010	MSKCC	GRCh37	9	27228211	27228211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	62	516	0	ENST00000380036.4:c.3208C>A	p.Leu1070Ile	p.L1070I	ENST00000380036	NM_000459.3	1070	Cta/Ata																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	381	686	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	88	276	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																														
AKT1	207	MSKCC	GRCh37	14	105238778	105238778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	71	652	0	ENST00000349310.3:c.1184G>T	p.Gly395Val	p.G395V	ENST00000349310	NM_001014432.1	395	gGc/gTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220269	5220269	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0046547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	225	679	0	ENST00000357368.4:c.3549+2T>A		p.X1183_splice	ENST00000357368	NM_002850.3	1183																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950688	79950688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	146	218	0	ENST00000265081.6:c.142G>T	p.Asp48Tyr	p.D48Y	ENST00000265081	NM_002439.4	48	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	187	699	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18439791	18439791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	47	341	0	ENST00000266497.5:c.689G>T	p.Cys230Phe	p.C230F	ENST00000266497		230	tGt/tTt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016655	12016655	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	96	380	0	ENST00000353533.5:c.791C>G	p.Ala264Gly	p.A264G	ENST00000353533	NM_003010.3	264	gCt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112175365	112175366	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0046548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	63	282	0	ENST00000257430.4:c.4074_4075del	p.Lys1359IlefsTer15	p.K1359Ifs*15	ENST00000257430	NM_000038.5	1358	gcGAaa/gcaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573478	48573479	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	67	227	0	ENST00000342988.3:c.63_64del	p.His21GlnfsTer6	p.H21Qfs*6	ENST00000342988	NM_005359.5	21	cAT/c																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134251	11134251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	490	575	1	ENST00000344626.4:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000344626	NM_003072.3	973	Cgg/Tgg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81528563	81528563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	49	229	0	ENST00000298171.2:c.242T>G	p.Ile81Ser	p.I81S	ENST00000298171	NM_000369.2	81	aTc/aGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577112	7577113	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	273	623	0	ENST00000269305.4:c.825_826del	p.Ala276LeufsTer29	p.A276Lfs*29	ENST00000269305	NM_001126112.2	275	tgTGcc/tgcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562935	29562935	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	212	359	0	ENST00000358273.4:c.3871-1G>T		p.X1291_splice	ENST00000358273	NM_001042492.2	1291																																																																															
RNF43	54894	MSKCC	GRCh37	17	56492731	56492731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	450	500	0	ENST00000407977.2:c.208G>C	p.Ala70Pro	p.A70P	ENST00000407977		70	Gct/Cct																																																																														
SRC	6714	MSKCC	GRCh37	20	36031656	36031656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2079	273	744	0	ENST00000358208.4:c.1485C>G	p.His495Gln	p.H495Q	ENST00000358208		495	caC/caG																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323207	31323207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	44	605	0	ENST00000412585.2:c.782G>C	p.Gly261Ala	p.G261A	ENST00000412585	NM_005514.6	261	gGa/gCa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393591	139393591	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs3812597		P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	367	748	2	ENST00000277541.6:c.6055G>T	p.Ala2019Ser	p.A2019S	ENST00000277541	NM_017617.3	2019	Gcc/Tcc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982099	201982107	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCCTCAG	ACTCCTCAG	C			P-0046552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	208	625	0	ENST00000359651.3:c.623_631delinsC	p.His208ProfsTer6	p.H208Pfs*6	ENST00000359651		208	cACTCCTCAGac/cCac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			249	212	305	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			223	80	361	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398262	25398262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			242	93	393	0	ENST00000256078.4:c.57G>C	p.Leu19Phe	p.L19F	ENST00000256078	NM_033360.2	19	ttG/ttC																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158626	26158626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			283	160	278	1	ENST00000289316.2:c.229G>A	p.Glu77Lys	p.E77K	ENST00000289316	NM_138720.2	77	Gag/Aag																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645693	12645693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			265	191	310	0	ENST00000251849.4:c.776C>T	p.Ser259Phe	p.S259F	ENST00000251849	NM_002880.3	259	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230772	46230772	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			150	93	264	0	ENST00000334344.6:c.1021G>C	p.Glu341Gln	p.E341Q	ENST00000334344	NM_152641.2	341	Gag/Cag																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588849	69588849	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			2329	599	979	1	ENST00000168712.1:c.387C>A	p.Phe129Leu	p.F129L	ENST00000168712	NM_002007.2	129	ttC/ttA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298501	11298501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			776	67	581	0	ENST00000361445.4:c.1960G>A	p.Asp654Asn	p.D654N	ENST00000361445	NM_004958.3	654	Gat/Aat																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112919902	112919902	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			251	40	214	0	ENST00000351677.2:c.1117G>C	p.Asp373His	p.D373H	ENST00000351677	NM_002834.3	373	Gat/Cat																																																																														
CDH1	999	MSKCC	GRCh37	16	68844122	68844122	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			753	86	568	0	ENST00000261769.5:c.710C>G	p.Ser237Cys	p.S237C	ENST00000261769	NM_004360.3	237	tCc/tGc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89818628	89818628	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			443	42	344	0	ENST00000389301.3:c.2984C>G	p.Ser995Ter	p.S995*	ENST00000389301	NM_000135.2	995	tCa/tGa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11168983	11168983	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			610	426	710	0	ENST00000344626.4:c.4477G>C	p.Glu1493Gln	p.E1493Q	ENST00000344626	NM_003072.3	1493	Gag/Cag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170834	11170834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			662	429	803	0	ENST00000344626.4:c.4882G>A	p.Asp1628Asn	p.D1628N	ENST00000344626	NM_003072.3	1628	Gac/Aac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170861	11170861	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004226-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			534	338	658	1	ENST00000344626.4:c.4909G>A	p.Glu1637Lys	p.E1637K	ENST00000344626	NM_003072.3	1637	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			83	87	512	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			83	87	512	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			68	75	868	2	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	68	509	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			94	100	904	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			83	87	512	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			95	83	1005	1	ENST00000171111.5:c.815G>A	p.Arg272His	p.R272H	ENST00000171111	NM_203500.1	272	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097782	27097782	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			85	96	427	0	ENST00000324856.7:c.3371A>T	p.Lys1124Met	p.K1124M	ENST00000324856	NM_006015.4	1124	aAg/aTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120460387	120460387	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			57	68	401	0	ENST00000256646.2:c.5930-2A>T		p.X1977_splice	ENST00000256646	NM_024408.3	1977																																																																															
PGR	5241	MSKCC	GRCh37	11	100999347	100999347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			89	60	972	1	ENST00000325455.5:c.455C>A	p.Pro152Gln	p.P152Q	ENST00000325455	NM_001202474.3	152	cCg/cAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499689	18499689	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			160	26	419	0	ENST00000266497.5:c.1544C>G	p.Ser515Cys	p.S515C	ENST00000266497		515	tCc/tGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434067	49434067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			138	70	788	1	ENST00000301067.7:c.7486G>T	p.Ala2496Ser	p.A2496S	ENST00000301067	NM_003482.3	2496	Gca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446430	49446430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			137	81	637	0	ENST00000301067.7:c.1175G>T	p.Cys392Phe	p.C392F	ENST00000301067	NM_003482.3	392	tGc/tTc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479833	67479833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			145	57	580	0	ENST00000327367.4:c.1140G>T	p.Trp380Cys	p.W380C	ENST00000327367	NM_005902.3	380	tgG/tgT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251761	212251761	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	52	372	0	ENST00000342788.4:c.3298G>T	p.Glu1100Ter	p.E1100*	ENST00000342788	NM_005235.2	1100	Gag/Tag																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750473	41750473	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			177	33	563	0	ENST00000226382.2:c.155G>C	p.Gly52Ala	p.G52A	ENST00000226382	NM_003924.3	52	gGg/gCg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038562	47038562	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			85	90	855	0	ENST00000329236.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000329236	NM_001204466.1	165	Gag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76938611	76938611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			142	18	484	0	ENST00000373344.5:c.2137C>A	p.Pro713Thr	p.P713T	ENST00000373344	NM_000489.3	713	Cct/Act																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200032	123200032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			86	18	252	0	ENST00000218089.9:c.2104G>C	p.Asp702His	p.D702H	ENST00000218089	NM_001042749.1	702	Gac/Cac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933371	39933371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			143	41	830	0	ENST00000378444.4:c.1228G>C	p.Ala410Pro	p.A410P	ENST00000378444	NM_001123385.1	410	Gcc/Ccc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			838	1950	482	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944686	32944686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	28	317	0	ENST00000380152.3:c.8479C>T	p.Pro2827Ser	p.P2827S	ENST00000380152		2827	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577585	7577586	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0036397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			680	154	538	1	ENST00000269305.4:c.695_696delinsAT	p.Ile232Asn	p.I232N	ENST00000269305	NM_001126112.2	232	aTC/aAT																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115263339	115263339	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0042260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	207	652	1	ENST00000438362.2:c.2012-1G>T		p.X671_splice	ENST00000438362	NM_001242891.1	671																																																																															
KIT	3815	MSKCC	GRCh37	4	55593664	55593665	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTATGA			P-0042260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	165	545	0	ENST00000288135.5:c.1732_1737dup	p.Tyr578_Asp579dup	p.Y578_D579dup	ENST00000288135	NM_000222.2	578	cct/ccTTATGAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042717-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			415	157	604	0	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149503831	149503831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042717-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			475	50	506	0	ENST00000261799.4:c.2005G>A	p.Gly669Arg	p.G669R	ENST00000261799	NM_002609.3	669	Ggg/Agg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259514	55259515	+	missense_variant	Missense_Mutation	DNP	CT	CT	AG			P-0042717-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			844	182	473	0	ENST00000275493.2:c.2572_2573inv	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	CTg/AGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0044705-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			777	547	529	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249012	55249013	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGTTT			P-0044705-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2528	913	557	0	ENST00000275493.2:c.2310_2311insGGGTTT	p.Asp770_Asn771insGlyPhe	p.D770_N771insGF	ENST00000275493	NM_005228.3	770	-/GGGTTT																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419049	419049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044705-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	19	315	0	ENST00000399788.2:c.3298G>A	p.Glu1100Lys	p.E1100K	ENST00000399788	NM_001042603.1	1100	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274133	10274133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044705-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			4246	1726	617	1	ENST00000330684.3:c.136G>A	p.Val46Met	p.V46M	ENST00000330684	NM_001134407.1	46	Gtg/Atg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			136	22	391	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572588	64572588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			174	54	1010	0	ENST00000337652.1:c.1283G>A	p.Trp428Ter	p.W428*	ENST00000337652	NM_130803.2	428	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			174	37	912	1	ENST00000269305.4:c.743_744delGGinsAA	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGG/cAA																																																																														
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	62	1188	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602692	10602692	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			172	60	1063	1	ENST00000171111.5:c.886del	p.Arg296AlafsTer21	p.R296Afs*21	ENST00000171111	NM_203500.1	296	Cgc/gc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739392	145739392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	33	984	0	ENST00000428558.2:c.1978G>C	p.Glu660Gln	p.E660Q	ENST00000428558	NM_004260.3	660	Gaa/Caa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859702	151859702	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	20	486	0	ENST00000262189.6:c.10960C>T	p.Gln3654Ter	p.Q3654*	ENST00000262189	NM_170606.2	3654	Caa/Taa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256591	16256591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			126	19	638	0	ENST00000375759.3:c.3856G>A	p.Gly1286Arg	p.G1286R	ENST00000375759	NM_015001.2	1286	Ggg/Agg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832863	3832863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	20	643	0	ENST00000262367.5:c.1395G>C	p.Gln465His	p.Q465H	ENST00000262367	NM_004380.2	465	caG/caC																																																																														
APC	324	MSKCC	GRCh37	5	112174622	112174622	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			88	12	467	0	ENST00000257430.4:c.3331G>C	p.Glu1111Gln	p.E1111Q	ENST00000257430	NM_000038.5	1111	Gaa/Caa																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665213	138665213	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	29	983	1	ENST00000330315.3:c.352G>T	p.Glu118Ter	p.E118*	ENST00000330315	NM_023067.3	118	Gag/Tag																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742942	17742942	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	18	816	0	ENST00000250003.3:c.850G>C	p.Glu284Gln	p.E284Q	ENST00000250003	NM_002478.4	284	Gag/Cag																																																																														
CCND1	595	MSKCC	GRCh37	11	69458693	69458693	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	73	662	0	ENST00000227507.2:c.508G>C	p.Glu170Gln	p.E170Q	ENST00000227507	NM_053056.2	170	Gag/Cag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865426	57865426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	36	1073	1	ENST00000228682.2:c.2903C>T	p.Ser968Leu	p.S968L	ENST00000228682	NM_005269.2	968	tCa/tTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726714	88726714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	38	567	0	ENST00000360948.2:c.330C>G	p.Ile110Met	p.I110M	ENST00000360948	NM_001012338.2	110	atC/atG																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348719	11348719	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	27	844	0	ENST00000332029.2:c.617C>G	p.Ser206Cys	p.S206C	ENST00000332029	NM_003745.1	206	tCc/tGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221489	36221489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	85	1142	0	ENST00000222270.7:c.5248G>A	p.Glu1750Lys	p.E1750K	ENST00000222270	NM_014727.1	1750	Gag/Aag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526907	31526907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	48	1005	0	ENST00000344624.3:c.133C>T	p.Gln45Ter	p.Q45*	ENST00000344624		45	Cag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679893	30679910	+	inframe_deletion	In_Frame_Del	DEL	TCTGCCCCAGCATCCCCT	TCTGCCCCAGCATCCCCT	-			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	80	616	0	ENST00000376406.3:c.1809_1826del	p.Gly604_Glu609del	p.G604_E609del	ENST00000376406	NM_014641.2	603	gaAGGGGATGCTGGGGCAGAg/gag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371791	55371791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045807-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			105	11	210	0	ENST00000297316.4:c.481G>A	p.Glu161Lys	p.E161K	ENST00000297316	NM_022454.3	161	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	122	353	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	121	561	0	ENST00000269305.4:c.774A>T	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaT																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204938	128204938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	112	723	0	ENST00000341105.2:c.503C>A	p.Ser168Tyr	p.S168Y	ENST00000341105	NM_032638.4	168	tCc/tAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348446	89348446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	134	654	0	ENST00000301030.4:c.4504C>T	p.Pro1502Ser	p.P1502S	ENST00000301030	NM_001256183.1	1502	Ccc/Tcc																																																																														
CASP8	841	MSKCC	GRCh37	2	202131392	202131392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	35	439	0	ENST00000358485.4:c.360C>A	p.Phe120Leu	p.F120L	ENST00000358485	NM_001080125.1	120	ttC/ttA																																																																														
HGF	3082	MSKCC	GRCh37	7	81334780	81334780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	59	427	0	ENST00000222390.5:c.1936C>A	p.His646Asn	p.H646N	ENST00000222390	NM_000601.4	646	Cat/Aat																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0046390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	197	568	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
NF2	4771	MSKCC	GRCh37	22	30032794	30032794	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	166	382	0	ENST00000338641.4:c.169C>T	p.Arg57Ter	p.R57*	ENST00000338641	NM_000268.3	57	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	213	646	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928881	49928881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	200	747	0	ENST00000296474.3:c.3485C>A	p.Pro1162His	p.P1162H	ENST00000296474	NM_002447.2	1162	cCc/cAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42041565	42041566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	156	477	0	ENST00000219905.7:c.5764dup	p.Ile1922AsnfsTer4	p.I1922Nfs*4	ENST00000219905	NM_001164273.1	1920	-/A																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690817	89690818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	70	258	0	ENST00000371953.3:c.226dup	p.Tyr76LeufsTer2	p.Y76Lfs*2	ENST00000371953	NM_000314.4	75	cat/caTt																																																																														
CCND2	894	MSKCC	GRCh37	12	4385230	4385230	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	109	430	0	ENST00000261254.3:c.255C>G	p.Asp85Glu	p.D85E	ENST00000261254	NM_001759.3	85	gaC/gaG																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434595	110434595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	128	447	0	ENST00000375856.3:c.3806A>G	p.Gln1269Arg	p.Q1269R	ENST00000375856	NM_003749.2	1269	cAg/cGg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820717	3820717	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	290	786	0	ENST00000262367.5:c.2734del	p.Thr912ProfsTer15	p.T912Pfs*15	ENST00000262367	NM_004380.2	912	Acc/cc																																																																														
FANCC	2176	MSKCC	GRCh37	9	97934332	97934332	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	44	246	0	ENST00000289081.3:c.443del	p.Gly148ValfsTer10	p.G148Vfs*10	ENST00000289081	NM_000136.2	148	gGt/gt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	27	343	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212208	5212208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148739536		P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	47	562	1	ENST00000357368.4:c.4823G>A	p.Arg1608Gln	p.R1608Q	ENST00000357368	NM_002850.3	1608	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	58	473	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	30	255	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	103	407	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
PMS2	5395	MSKCC	GRCh37	7	6042115	6042115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	15	172	0	ENST00000265849.7:c.506G>A	p.Arg169His	p.R169H	ENST00000265849	NM_000535.5	169	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	70	537	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	88	374	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	69	601	3	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056237	26056245	+	inframe_deletion	In_Frame_Del	DEL	CTTCTTGGG	CTTCTTGGG	-			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	41	425	0	ENST00000343677.2:c.412_420delCCCAAGAAG	p.Pro138_Lys140del	p.P138_K140del	ENST00000343677	NM_005319.3	138	CCCAAGAAG/-																																																																														
BCL6	604	MSKCC	GRCh37	3	187447774	187447774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	59	446	0	ENST00000232014.4:c.419G>A	p.Arg140His	p.R140H	ENST00000232014	NM_001130845.1	140	cGt/cAt																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741636	17741636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	38	223	0	ENST00000250003.3:c.307C>T	p.Arg103Cys	p.R103C	ENST00000250003	NM_002478.4	103	Cgc/Tgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	52	653	1	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																														
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	21	175	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																														
BCL6	604	MSKCC	GRCh37	3	187446845	187446845	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201771435		P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	72	521	0	ENST00000232014.4:c.1348G>A	p.Val450Ile	p.V450I	ENST00000232014	NM_001130845.1	450	Gtt/Att																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56183297	56183297	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	54	412	0	ENST00000399503.3:c.4207G>T	p.Gly1403Ter	p.G1403*	ENST00000399503	NM_005921.1	1403	Gga/Tga																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39609379	39609379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	50	292	0	ENST00000262039.4:c.1681C>T	p.Arg561Cys	p.R561C	ENST00000262039	NM_002647.2	561	Cgc/Tgc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007331	143007332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	42	275	0	ENST00000262992.4:c.2452dupA	p.Arg818LysfsTer26	p.R818Kfs*26	ENST00000262992	NM_001101669.1	818	aga/aAga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86637110	86637110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	27	223	0	ENST00000274376.6:c.1021C>T	p.Arg341Trp	p.R341W	ENST00000274376	NM_002890.2	341	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500802	8500802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	54	372	0	ENST00000356435.5:c.2080G>A	p.Gly694Ser	p.G694S	ENST00000356435		694	Ggc/Agc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480624	50480624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	32	351	1	ENST00000394963.4:c.494G>A	p.Arg165Gln	p.R165Q	ENST00000394963	NM_003076.4	165	cGg/cAg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048796	180048796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	71	772	0	ENST00000261937.6:c.1766G>A	p.Arg589His	p.R589H	ENST00000261937	NM_182925.4	589	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943374	71943374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141305290		P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	40	488	0	ENST00000298229.2:c.1706C>T	p.Thr569Met	p.T569M	ENST00000298229	NM_001567.3	569	aCg/aTg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106004	8106004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	57	400	0	ENST00000346208.3:c.824G>A	p.Arg275Gln	p.R275Q	ENST00000346208		275	cGg/cAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272519	11272519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	42	341	0	ENST00000361445.4:c.3411G>T	p.Glu1137Asp	p.E1137D	ENST00000361445	NM_004958.3	1137	gaG/gaT																																																																														
ATM	472	MSKCC	GRCh37	11	108173703	108173703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	29	368	0	ENST00000278616.4:c.5443G>T	p.Asp1815Tyr	p.D1815Y	ENST00000278616	NM_000051.3	1815	Gac/Tac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438733	49438733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	60	595	0	ENST00000301067.7:c.4757G>A	p.Arg1586His	p.R1586H	ENST00000301067	NM_003482.3	1586	cGc/cAc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562580	21562580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	11	154	0	ENST00000382592.4:c.1339G>A	p.Val447Met	p.V447M	ENST00000382592	NM_014572.2	447	Gtg/Atg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950837	32950837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	41	338	0	ENST00000380152.3:c.8663G>A	p.Arg2888His	p.R2888H	ENST00000380152		2888	cGt/cAt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56867238	56867238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	37	391	0	ENST00000308159.5:c.1457G>T	p.Arg486Leu	p.R486L	ENST00000308159	NM_014669.4	486	cGc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993779	72993779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	64	495	2	ENST00000268489.5:c.266C>T	p.Ala89Val	p.A89V	ENST00000268489	NM_006885.3	89	gCc/gTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2227091	2227091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	72	595	4	ENST00000398665.3:c.4571G>A	p.Gly1524Asp	p.G1524D	ENST00000398665	NM_032482.2	1524	gGc/gAc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247835	10247835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	49	749	0	ENST00000340748.4:c.4367G>A	p.Arg1456Gln	p.R1456Q	ENST00000340748		1456	cGg/cAg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610630	10610631	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	53	526	0	ENST00000171111.5:c.79dup	p.Ala27GlyfsTer11	p.A27Gfs*11	ENST00000171111	NM_203500.1	27	gca/gGca																																																																														
MSH2	4436	MSKCC	GRCh37	2	47672723	47672725	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	60	438	0	ENST00000233146.2:c.1316_1318del	p.Pro439del	p.P439del	ENST00000233146	NM_000251.2	438	aCTCct/act																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172172	99172172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	32	479	1	ENST00000074304.5:c.1738G>A	p.Ala580Thr	p.A580T	ENST00000074304	NM_001134224.1	580	Gcc/Acc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209108241	209108241	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	49	452	0	ENST00000345146.2:c.608A>G	p.Lys203Arg	p.K203R	ENST00000345146	NM_005896.2	203	aAg/aGg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225342936	225342936	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	45	354	0	ENST00000264414.4:c.2156A>G	p.His719Arg	p.H719R	ENST00000264414	NM_003590.4	719	cAc/cGc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660126	227660126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	53	576	0	ENST00000305123.5:c.3329C>T	p.Ala1110Val	p.A1110V	ENST00000305123	NM_005544.2	1110	gCc/gTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588742	52588742	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs145488469		P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	41	477	0	ENST00000394830.3:c.4286C>T	p.Pro1429Leu	p.P1429L	ENST00000394830	NM_018313.4	1429	cCg/cTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247265	153247266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTG			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	36	284	0	ENST00000281708.4:c.1533_1536dup	p.Arg513GlnfsTer5	p.R513Qfs*5	ENST00000281708	NM_033632.3	512	-/CAGG																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637260	176637260	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	45	493	0	ENST00000439151.2:c.1860G>T	p.Lys620Asn	p.K620N	ENST00000439151	NM_022455.4	620	aaG/aaT																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912288	29912288	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	69	890	0	ENST00000376809.5:c.907C>T	p.Gln303Ter	p.Q303*	ENST00000376809	NM_002116.7	303	Cag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959067	2959067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	58	618	0	ENST00000396946.4:c.2449G>A	p.Ala817Thr	p.A817T	ENST00000396946	NM_032415.4	817	Gcg/Acg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522629	106522629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	25	338	0	ENST00000359195.3:c.2606G>A	p.Cys869Tyr	p.C869Y	ENST00000359195	NM_002649.2	869	tGc/tAc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128347939	128347939	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	80	561	0	ENST00000265960.3:c.566G>C	p.Arg189Thr	p.R189T	ENST00000265960	NM_001006617.1	189	aGa/aCa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139397732	139397734	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0046394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	51	643	0	ENST00000277541.6:c.5067_5069del	p.Ser1690del	p.S1690del	ENST00000277541	NM_017617.3	1689	tcCTCg/tcg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	499	428	12	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	415	357	3	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	268	175	5	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347209	347209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	440	502	2	ENST00000262320.3:c.1802C>T	p.Ala601Val	p.A601V	ENST00000262320	NM_003502.3	601	gCg/gTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591826	48591826	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	402	332	6	ENST00000342988.3:c.989A>T	p.Glu330Val	p.E330V	ENST00000342988	NM_005359.5	330	gAa/gTa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434369	121434369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	271	624	0	ENST00000257555.6:c.1133C>A	p.Pro378His	p.P378H	ENST00000257555		378	cCc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578518	7578519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGTTGG			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	588	742	11	ENST00000269305.4:c.405_411dup	p.Ala138ProfsTer13	p.A138Pfs*13	ENST00000269305	NM_001126112.2	137	-/CCAACTG																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259150	89259150	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	124	291	0	ENST00000336596.2:c.294del	p.Glu98AspfsTer16	p.E98Dfs*16	ENST00000336596	NM_005233.5	98	gaG/ga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030201	180030201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	511	493	9	ENST00000261937.6:c.4083C>A	p.Asn1361Lys	p.N1361K	ENST00000261937	NM_182925.4	1361	aaC/aaA																																																																														
SESN1	27244	MSKCC	GRCh37	6	109315788	109315788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	566	452	10	ENST00000436639.2:c.997G>A	p.Glu333Lys	p.E333K	ENST00000436639	NM_014454.2	333	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	148	319	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	175	289	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993900	72993900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	320	584	0	ENST00000268489.5:c.145C>T	p.Pro49Ser	p.P49S	ENST00000268489	NM_006885.3	49	Ccc/Tcc																																																																														
ATM	472	MSKCC	GRCh37	11	108143448	108143448	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	471	356	0	ENST00000278616.4:c.3154-1G>A		p.X1052_splice	ENST00000278616	NM_000051.3	1052																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0046396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	212	257	0				ENST00000310581	NM_198253.2																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18435658	18435658	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	42	243	0	ENST00000266497.5:c.643G>C	p.Gly215Arg	p.G215R	ENST00000266497		215	Gga/Cga																																																																														
RAB35	11021	MSKCC	GRCh37	12	120541715	120541716	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	331	605	1	ENST00000229340.5:c.141_142delinsTT	p.Arg48Trp	p.R48W	ENST00000229340	NM_006861.6	47	atCCgg/atTTgg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472634	88472634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	31	353	0	ENST00000360948.2:c.1921G>A	p.Asp641Asn	p.D641N	ENST00000360948	NM_001012338.2	641	Gat/Aat																																																																														
NF1	4763	MSKCC	GRCh37	17	29670030	29670030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	173	311	0	ENST00000358273.4:c.7066C>T	p.Pro2356Ser	p.P2356S	ENST00000358273	NM_001042492.2	2356	Cca/Tca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790092	40790092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	261	531	0	ENST00000373198.4:c.2639C>T	p.Pro880Leu	p.P880L	ENST00000373198	NM_133170.3	880	cCc/cTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149501457	149501457	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	331	663	0	ENST00000261799.4:c.2330A>G	p.Asn777Ser	p.N777S	ENST00000261799	NM_002609.3	777	aAc/aGc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679780	30679780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	312	470	1	ENST00000376406.3:c.1939G>A	p.Asp647Asn	p.D647N	ENST00000376406	NM_014641.2	647	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	34	460	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995500	68995500	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	32	573	0	ENST00000288368.4:c.1904A>T	p.Lys635Met	p.K635M	ENST00000288368	NM_024870.2	635	aAg/aTg																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366962	40366962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200396403		P-0046399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	40	669	0	ENST00000397332.2:c.235C>T	p.Pro79Ser	p.P79S	ENST00000397332	NM_001033082.2	79	Ccc/Tcc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914894	32914898	+	frameshift_variant	Frame_Shift_Del	DEL	TAACT	TAACT	-			P-0046399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	12	400	0	ENST00000380152.3:c.6405_6409del	p.Asn2135LysfsTer3	p.N2135Kfs*3	ENST00000380152		2134	aaTAACTta/aata																																																																														
EP300	2033	MSKCC	GRCh37	22	41531828	41531828	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	20	500	0	ENST00000263253.7:c.1540A>T	p.Met514Leu	p.M514L	ENST00000263253	NM_001429.3	514	Atg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	552	701	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783196	9783196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	379	580	0	ENST00000377346.4:c.2440G>A	p.Gly814Ser	p.G814S	ENST00000377346	NM_005026.3	814	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	15	419	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	169	494	0	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858517	9858517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	197	674	1	ENST00000330684.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000330684	NM_001134407.1	962	Gaa/Aaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589323	28589323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	153	450	1	ENST00000241453.7:c.2724G>A	p.Met908Ile	p.M908I	ENST00000241453	NM_004119.2	908	atG/atA																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	148	545	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085647	16085647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	253	690	1	ENST00000281043.3:c.823G>A	p.Glu275Lys	p.E275K	ENST00000281043	NM_005378.4	275	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467675	50467675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759124417		P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	215	692	0	ENST00000331340.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000331340	NM_006060.4	304	Gaa/Aaa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031895	26031895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	117	354	0	ENST00000244661.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000244661	NM_003537.3	132	Cgc/Tgc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149439303	149439303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	135	751	0	ENST00000286301.3:c.2092G>A	p.Asp698Asn	p.D698N	ENST00000286301	NM_005211.3	698	Gac/Aac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32182001	32182001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1311	292	924	0	ENST00000375023.3:c.2053G>A	p.Gly685Arg	p.G685R	ENST00000375023	NM_004557.3	685	Ggg/Agg																																																																														
MET	4233	MSKCC	GRCh37	7	116415040	116415040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	201	712	0	ENST00000397752.3:c.3134C>T	p.Pro1045Leu	p.P1045L	ENST00000397752	NM_000245.2	1045	cCa/cTa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041266	29041267	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	146	463	1	ENST00000282397.4:c.162-1_162delinsAA		p.X54_splice	ENST00000282397	NM_002019.4	54																																																																															
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	316	752	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
NF1	4763	MSKCC	GRCh37	17	29486026	29486026	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	52	287	0	ENST00000358273.4:c.205-2A>G		p.X69_splice	ENST00000358273	NM_001042492.2	69																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112915464	112915464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	154	601	0	ENST00000351677.2:c.863C>T	p.Thr288Ile	p.T288I	ENST00000351677	NM_002834.3	288	aCc/aTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42795109	42795109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	373	1118	2	ENST00000575354.2:c.2189C>T	p.Ser730Leu	p.S730L	ENST00000575354	NM_015125.3	730	tCg/tTg																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675049	40675049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	237	810	0	ENST00000249776.8:c.13G>A	p.Glu5Lys	p.E5K	ENST00000249776	NM_033286.3	5	Gaa/Aaa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640719	3640719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	279	893	0	ENST00000294008.3:c.2920C>T	p.Leu974Phe	p.L974F	ENST00000294008	NM_032444.2	974	Ctt/Ttt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937178	36937178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	351	925	2	ENST00000361632.4:c.1141G>A	p.Ala381Thr	p.A381T	ENST00000361632		381	Gct/Act																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552648	18552648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	132	629	0	ENST00000266497.5:c.2059G>A	p.Glu687Lys	p.E687K	ENST00000266497		687	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	163	376	0				ENST00000310581	NM_198253.2																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8340420	8340420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	119	645	0	ENST00000356435.5:c.5176G>A	p.Glu1726Lys	p.E1726K	ENST00000356435		1726	Gaa/Aaa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980753	70980753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	154	639	0	ENST00000276594.2:c.715C>T	p.Pro239Ser	p.P239S	ENST00000276594	NM_024504.3	239	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449821	8449821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	209	557	0	ENST00000356435.5:c.3892G>A	p.Asp1298Asn	p.D1298N	ENST00000356435		1298	Gac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101547	27101547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	347	945	0	ENST00000324856.7:c.4829G>A	p.Gly1610Glu	p.G1610E	ENST00000324856	NM_006015.4	1610	gGg/gAg																																																																														
ALK	238	MSKCC	GRCh37	2	29519809	29519809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	285	716	1	ENST00000389048.3:c.1762G>A	p.Glu588Lys	p.E588K	ENST00000389048	NM_004304.4	588	Gaa/Aaa																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47604193	47604193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	116	427	0	ENST00000263735.4:c.532C>T	p.Pro178Ser	p.P178S	ENST00000263735	NM_002354.2	178	Cca/Tca																																																																														
RARA	5914	MSKCC	GRCh37	17	38504616	38504616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	288	851	1	ENST00000254066.5:c.227C>T	p.Pro76Leu	p.P76L	ENST00000254066	NM_000964.3	76	cCc/cTc																																																																														
MPL	4352	MSKCC	GRCh37	1	43803565	43803565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	266	813	0	ENST00000372470.3:c.46G>A	p.Ala16Thr	p.A16T	ENST00000372470	NM_005373.2	16	Gcc/Acc																																																																														
RET	5979	MSKCC	GRCh37	10	43601914	43601914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	268	1027	0	ENST00000355710.3:c.958C>T	p.Pro320Ser	p.P320S	ENST00000355710	NM_020975.4	320	Ccc/Tcc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572060	64572061	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	288	818	0	ENST00000337652.1:c.1593_1594delinsTT	p.Arg532Ter	p.R532*	ENST00000337652	NM_130803.2	531	gcCCga/gcTTga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342391	118342391	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	59	263	0	ENST00000534358.1:c.517C>T	p.Arg173Ter	p.R173*	ENST00000534358	NM_005933.3	173	Cga/Tga																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536852	120536852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	336	872	0	ENST00000229340.5:c.334G>A	p.Asp112Asn	p.D112N	ENST00000229340	NM_006861.6	112	Gat/Aat																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959431	26959431	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	153	503	0	ENST00000381527.3:c.598C>T	p.Arg200Ter	p.R200*	ENST00000381527	NM_001260.1	200	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915319	32915319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	170	782	0	ENST00000380152.3:c.6827C>T	p.Pro2276Leu	p.P2276L	ENST00000380152		2276	cCc/cTc																																																																														
MGA	23269	MSKCC	GRCh37	15	41961126	41961126	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	95	345	0	ENST00000219905.7:c.34C>T	p.Gln12Ter	p.Q12*	ENST00000219905	NM_001164273.1	12	Caa/Taa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748812	43748812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	312	1024	0	ENST00000382044.4:c.1994C>T	p.Ser665Leu	p.S665L	ENST00000382044	NM_001141980.1	665	tCa/tTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789594	3789594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	160	491	0	ENST00000262367.5:c.4265C>T	p.Pro1422Leu	p.P1422L	ENST00000262367	NM_004380.2	1422	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916149	9916149	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	203	639	0	ENST00000330684.3:c.2140G>T	p.Glu714Ter	p.E714*	ENST00000330684	NM_001134407.1	714	Gag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992523	72992523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	353	959	0	ENST00000268489.5:c.1522C>T	p.His508Tyr	p.H508Y	ENST00000268489	NM_006885.3	508	Cat/Tat																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897372	78897372	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	791	950	0	ENST00000306801.3:c.2707T>G	p.Ser903Ala	p.S903A	ENST00000306801	NM_020761.2	903	Tct/Gct																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134300	11134300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	238	634	0	ENST00000344626.4:c.2966C>T	p.Pro989Leu	p.P989L	ENST00000344626	NM_003072.3	989	cCc/cTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212404	36212404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	388	1009	0	ENST00000222270.7:c.2155G>T	p.Val719Leu	p.V719L	ENST00000222270	NM_014727.1	719	Gtg/Ttg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469614	25469615	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	324	918	3	ENST00000264709.3:c.1153_1154delinsTT	p.Pro385Leu	p.P385L	ENST00000264709	NM_175629.2	385	CCg/TTg																																																																														
RHOA	387	MSKCC	GRCh37	3	49405926	49405927	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	228	711	1	ENST00000418115.1:c.211_212delinsTT	p.Pro71Phe	p.P71F	ENST00000418115	NM_001664.2	71	CCc/TTc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876368	35876368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	213	767	0	ENST00000303115.3:c.1160C>T	p.Ser387Phe	p.S387F	ENST00000303115	NM_002185.3	387	tCc/tTc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589591	67589591	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	22	238	0	ENST00000274335.5:c.1354T>G	p.Tyr452Asp	p.Y452D	ENST00000274335		452	Tat/Gat																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502764	149502764	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	198	540	1	ENST00000261799.4:c.2024G>A	p.Gly675Glu	p.G675E	ENST00000261799	NM_002609.3	675	gGa/gAa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515168	149515168	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	317	808	0	ENST00000261799.4:c.314C>A	p.Ser105Tyr	p.S105Y	ENST00000261799	NM_002609.3	105	tCc/tAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180614	32180614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	272	713	1	ENST00000375023.3:c.2513G>A	p.Gly838Glu	p.G838E	ENST00000375023	NM_004557.3	838	gGa/gAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129121	152129121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	151	860	0	ENST00000206249.3:c.74C>T	p.Pro25Leu	p.P25L	ENST00000206249	NM_000125.3	25	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8375955	8375955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	69	399	0	ENST00000356435.5:c.4642C>T	p.Pro1548Ser	p.P1548S	ENST00000356435		1548	Ccg/Tcg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485941	8485941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	105	522	0	ENST00000356435.5:c.2876G>A	p.Arg959Lys	p.R959K	ENST00000356435		959	aGg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	284	887	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	224	833	1	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24129420	24129420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	239	444	0	ENST00000263121.7:c.64G>A	p.Asp22Asn	p.D22N	ENST00000263121	NM_003073.3	22	Gac/Aac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231410	46231410	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	115	386	0	ENST00000334344.6:c.1250C>G	p.Ser417Ter	p.S417*	ENST00000334344	NM_152641.2	417	tCa/tGa																																																																														
FH	2271	MSKCC	GRCh37	1	241665790	241665790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	36	500	1	ENST00000366560.3:c.1189G>A	p.Gly397Arg	p.G397R	ENST00000366560	NM_000143.3	397	Gga/Aga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120942	115120942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	229	626	0	ENST00000257566.3:c.64C>A	p.Pro22Thr	p.P22T	ENST00000257566	NM_016569.3	22	Cct/Act																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128050360	128050360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	38	580	0	ENST00000285398.2:c.297C>G	p.Phe99Leu	p.F99L	ENST00000285398	NM_000122.1	99	ttC/ttG																																																																														
NF2	4771	MSKCC	GRCh37	22	30067889	30067889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	191	659	2	ENST00000338641.4:c.1074G>C	p.Arg358Ser	p.R358S	ENST00000338641	NM_000268.3	358	agG/agC																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748164	41748164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	90	548	0	ENST00000226382.2:c.605C>A	p.Pro202His	p.P202H	ENST00000226382	NM_003924.3	202	cCc/cAc																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27777942	27777942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	111	429	0	ENST00000369163.2:c.91C>T	p.Pro31Ser	p.P31S	ENST00000369163	NM_003536.2	31	Ccg/Tcg																																																																														
HGF	3082	MSKCC	GRCh37	7	81335737	81335737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	42	409	0	ENST00000222390.5:c.1623G>C	p.Leu541Phe	p.L541F	ENST00000222390	NM_000601.4	541	ttG/ttC																																																																														
SMO	6608	MSKCC	GRCh37	7	128845454	128845454	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	170	821	0	ENST00000249373.3:c.751A>G	p.Thr251Ala	p.T251A	ENST00000249373	NM_005631.4	251	Aca/Gca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0046445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	118	494	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	68	614	0	ENST00000263967.3:c.1638G>T	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caT																																																																														
TAP1	6890	MSKCC	GRCh37	6	32813504	32813504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	60	555	1	ENST00000354258.4:c.2279C>T	p.Thr760Ile	p.T760I	ENST00000354258	NM_000593.5	760	aCc/aTc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904986	101904986	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	61	279	0	ENST00000374994.4:c.973+1G>T		p.X325_splice	ENST00000374994	NM_004612.2	325																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149460335	149460335	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	28	418	1	ENST00000286301.3:c.302T>C	p.Val101Ala	p.V101A	ENST00000286301	NM_005211.3	101	gTc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	523	692	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																														
RB1	5925	MSKCC	GRCh37	13	48878166	48878166	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	278	186	0	ENST00000267163.4:c.118G>T	p.Glu40Ter	p.E40*	ENST00000267163	NM_000321.2	40	Gag/Tag																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811755	102811755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	436	636	0	ENST00000307046.8:c.429C>A	p.Asn143Lys	p.N143K	ENST00000307046	NM_001111285.1	143	aaC/aaA																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71101776	71101776	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	149	153	0	ENST00000318789.4:c.422A>T	p.Gln141Leu	p.Q141L	ENST00000318789	NM_032682.5	141	cAg/cTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412656	63412656	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	406	680	0	ENST00000330258.3:c.511G>T	p.Gly171Cys	p.G171C	ENST00000330258	NM_152424.3	171	Ggc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49423014	49423014	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	566	654	0	ENST00000301067.7:c.14081A>T	p.Glu4694Val	p.E4694V	ENST00000301067	NM_003482.3	4694	gAg/gTg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41239848	41239848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	842	531	0	ENST00000379561.5:c.502C>T	p.Leu168Phe	p.L168F	ENST00000379561	NM_002015.3	168	Ctc/Ttc																																																																														
CBFB	865	MSKCC	GRCh37	16	67063380	67063380	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	325	410	0	ENST00000412916.2:c.70G>T	p.Glu24Ter	p.E24*	ENST00000412916		24	Gag/Tag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81892736	81892736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	177	270	0	ENST00000359376.3:c.447G>T	p.Gln149His	p.Q149H	ENST00000359376	NM_002661.3	149	caG/caT																																																																														
JAK3	3718	MSKCC	GRCh37	19	17937719	17937720	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	296	599	1	ENST00000458235.1:c.3208-1_3208delinsTT		p.X1070_splice	ENST00000458235	NM_000215.3	1070																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198273196	198273197	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	241	554	0	ENST00000335508.6:c.1013_1014delinsTT	p.Trp338Phe	p.W338F	ENST00000335508	NM_012433.2	338	tGG/tTT																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198281517	198281517	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	236	537	0	ENST00000335508.6:c.614A>T	p.Asp205Val	p.D205V	ENST00000335508	NM_012433.2	205	gAt/gTt																																																																														
AURKA	6790	MSKCC	GRCh37	20	54945291	54945291	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	270	328	0	ENST00000312783.6:c.1135G>C	p.Glu379Gln	p.E379Q	ENST00000312783	NM_198436.1	379	Gaa/Caa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259270	89259270	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	309	348	0	ENST00000336596.2:c.414T>A	p.His138Gln	p.H138Q	ENST00000336596	NM_005233.5	138	caT/caA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528579	89528579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6	213	279	0	ENST00000336596.2:c.2879G>T	p.Gly960Val	p.G960V	ENST00000336596	NM_005233.5	960	gGg/gTg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35861041	35861041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	466	356	0	ENST00000303115.3:c.170G>T	p.Cys57Phe	p.C57F	ENST00000303115	NM_002185.3	57	tGt/tTt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2951832	2951832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	248	789	0	ENST00000396946.4:c.3118G>A	p.Ala1040Thr	p.A1040T	ENST00000396946	NM_032415.4	1040	Gcc/Acc																																																																														
HGF	3082	MSKCC	GRCh37	7	81335670	81335670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	342	441	0	ENST00000222390.5:c.1690G>C	p.Val564Leu	p.V564L	ENST00000222390	NM_000601.4	564	Gtt/Ctt																																																																														
HGF	3082	MSKCC	GRCh37	7	81386621	81386621	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	224	347	0	ENST00000222390.5:c.368-2A>C		p.X123_splice	ENST00000222390	NM_000601.4	123																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509861	106509861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	422	564	0	ENST00000359195.3:c.1855C>A	p.Gln619Lys	p.Q619K	ENST00000359195	NM_002649.2	619	Caa/Aaa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964424	70964424	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	394	626	0	ENST00000276594.2:c.1604A>T	p.His535Leu	p.H535L	ENST00000276594	NM_024504.3	535	cAt/cTt																																																																														
SYK	6850	MSKCC	GRCh37	9	93606473	93606473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	818	989	0	ENST00000375746.1:c.293G>C	p.Gly98Ala	p.G98A	ENST00000375746	NM_001174167.1	98	gGc/gCc																																																																														
AR	367	MSKCC	GRCh37	X	66766390	66766390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	56	66	0	ENST00000374690.3:c.1402G>T	p.Gly468Cys	p.G468C	ENST00000374690	NM_000044.3	468	Ggc/Tgc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195157	123195157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	155	483	0	ENST00000218089.9:c.1500C>A	p.Ser500Arg	p.S500R	ENST00000218089	NM_001042749.1	500	agC/agA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	74	254	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0046447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	128	667	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0046447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	138	482	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467924	50467924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	73	584	0	ENST00000331340.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000331340	NM_006060.4	387	Gag/Aag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499393	89499393	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	138	439	0	ENST00000336596.2:c.2563C>T	p.Gln855Ter	p.Q855*	ENST00000336596	NM_005233.5	855	Cag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287229	46287229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	99	353	0	ENST00000334344.6:c.5174C>G	p.Ser1725Ter	p.S1725*	ENST00000334344	NM_152641.2	1725	tCa/tGa																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263992	104263992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	135	372	1	ENST00000369902.3:c.83C>T	p.Ser28Leu	p.S28L	ENST00000369902	NM_016169.3	28	tCg/tTg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46726954	46726954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186059216		P-0046447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	156	496	1	ENST00000371975.4:c.788G>A	p.Gly263Glu	p.G263E	ENST00000371975	NM_003579.3	263	gGa/gAa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959350	26959350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	118	237	0	ENST00000381527.3:c.517G>T	p.Asp173Tyr	p.D173Y	ENST00000381527	NM_001260.1	173	Gac/Tac																																																																														
RHOA	387	MSKCC	GRCh37	3	49412986	49412986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	173	581	0	ENST00000418115.1:c.37G>A	p.Asp13Asn	p.D13N	ENST00000418115	NM_001664.2	13	Gat/Aat																																																																														
MET	4233	MSKCC	GRCh37	7	116339633	116339633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	105	321	0	ENST00000397752.3:c.495G>T	p.Gln165His	p.Q165H	ENST00000397752	NM_000245.2	165	caG/caT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123227933	123227933	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	147	172	0	ENST00000218089.9:c.3644C>G	p.Ser1215Ter	p.S1215*	ENST00000218089	NM_001042749.1	1215	tCa/tGa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922986	44922994	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTACCTC	CTCTACCTC	G			P-0046447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	206	273	0	ENST00000377967.4:c.1847_1855delinsG	p.Thr616ArgfsTer2	p.T616Rfs*2	ENST00000377967	NM_021140.2	616	aCTCTACCTCat/aGat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261878	16261878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	119	589	2	ENST00000375759.3:c.9143C>T	p.Thr3048Met	p.T3048M	ENST00000375759	NM_015001.2	3048	aCg/aTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264364	16264364	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	182	849	0	ENST00000375759.3:c.10567C>T	p.Gln3523Ter	p.Q3523*	ENST00000375759	NM_015001.2	3523	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	30	111	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	168	750	0	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307211	65307211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199886153		P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	95	489	0	ENST00000342505.4:c.2477G>A	p.Arg826His	p.R826H	ENST00000342505	NM_002227.2	826	cGc/cAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458005	120458005	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	121	724	1	ENST00000256646.2:c.7340del	p.Gly2447ValfsTer43	p.G2447Vfs*43	ENST00000256646	NM_024408.3	2447	gGt/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	80	482	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	49	267	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903697	114903697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	121	626	0	ENST00000543371.1:c.701C>T	p.Pro234Leu	p.P234L	ENST00000543371	NM_001198531.1	234	cCg/cTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948483	71948484	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	251	1289	3	ENST00000298229.2:c.3201dup	p.Ser1068GlnfsTer17	p.S1068Qfs*17	ENST00000298229	NM_001567.3	1065	-/C																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	206	1071	8	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
YAP1	10413	MSKCC	GRCh37	11	102076639	102076642	+	frameshift_variant	Frame_Shift_Del	DEL	TCAG	TCAG	-			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	29	382	0	ENST00000282441.5:c.822_825del	p.Ser274ArgfsTer5	p.S274Rfs*5	ENST00000282441	NM_001130145.2	273	aTCAGt/at																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493621	56493621	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	63	376	0	ENST00000267101.3:c.2938-1G>T		p.X980_splice	ENST00000267101	NM_001982.3	980																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	65	1018	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
POLE	5426	MSKCC	GRCh37	12	133210862	133210862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	144	823	0	ENST00000320574.5:c.5914G>A	p.Val1972Met	p.V1972M	ENST00000320574	NM_006231.2	1972	Gtg/Atg																																																																														
MGA	23269	MSKCC	GRCh37	15	42028601	42028601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	139	699	0	ENST00000219905.7:c.4139G>A	p.Arg1380Gln	p.R1380Q	ENST00000219905	NM_001164273.1	1380	cGa/cAa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729104	66729104	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	139	608	0	ENST00000307102.5:c.312A>C	p.Lys104Asn	p.K104N	ENST00000307102	NM_002755.3	104	aaA/aaC																																																																														
TSC2	7249	MSKCC	GRCh37	16	2098651	2098653	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	159	589	0	ENST00000219476.3:c.37_39del	p.Glu13del	p.E13del	ENST00000219476	NM_000548.3	12	aAGGag/aag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2131664	2131664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	197	1114	0	ENST00000219476.3:c.3679C>A	p.Pro1227Thr	p.P1227T	ENST00000219476	NM_000548.3	1227	Ccc/Acc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348674	89348674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	168	784	0	ENST00000301030.4:c.4276G>A	p.Glu1426Lys	p.E1426K	ENST00000301030	NM_001256183.1	1426	Gaa/Aaa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7983995	7983995	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	64	385	0	ENST00000319144.4:c.631T>C	p.Phe211Leu	p.F211L	ENST00000319144	NM_001139.2	211	Ttc/Ctc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973674	15973674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	128	505	1	ENST00000268712.3:c.4318G>A	p.Ala1440Thr	p.A1440T	ENST00000268712	NM_006311.3	1440	Gca/Aca																																																																														
NF1	4763	MSKCC	GRCh37	17	29486063	29486064	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	45	262	0	ENST00000358273.4:c.246_247del	p.Gln83ValfsTer23	p.Q83Vfs*23	ENST00000358273	NM_001042492.2	80	taTCtc/tatc																																																																														
NF1	4763	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	246	720	3	ENST00000358273.4:c.2033delC	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40460264	40460264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	153	672	0	ENST00000345506.4:c.1975C>T	p.Arg659Trp	p.R659W	ENST00000345506	NM_003152.3	659	Cgg/Tgg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462635	40462635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	137	658	2	ENST00000345506.4:c.2333G>A	p.Arg778His	p.R778H	ENST00000345506	NM_003152.3	778	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	169	985	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	149	671	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210790	36210790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	215	1187	1	ENST00000222270.7:c.541C>T	p.Arg181Trp	p.R181W	ENST00000222270	NM_014727.1	181	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214720	36214720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	107	819	0	ENST00000222270.7:c.3146C>T	p.Ala1049Val	p.A1049V	ENST00000222270	NM_014727.1	1049	gCg/gTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	236	1262	4	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
AXL	558	MSKCC	GRCh37	19	41759567	41759567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	170	775	1	ENST00000301178.4:c.1990A>G	p.Ser664Gly	p.S664G	ENST00000301178	NM_021913.4	664	Agt/Ggt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906379	50906379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	211	1173	1	ENST00000440232.2:c.1040C>A	p.Pro347Gln	p.P347Q	ENST00000440232	NM_002691.3	347	cCg/cAg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52722956	52722956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	136	672	3	ENST00000322088.6:c.1141C>T	p.Arg381Trp	p.R381W	ENST00000322088	NM_014225.5	381	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52725442	52725442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	143	799	0	ENST00000322088.6:c.1609C>T	p.Arg537Cys	p.R537C	ENST00000322088	NM_014225.5	537	Cgc/Tgc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703511	47703511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	167	456	0	ENST00000233146.2:c.2011A>T	p.Asn671Tyr	p.N671Y	ENST00000233146	NM_000251.2	671	Aat/Tat																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	52	461	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096319	178096321	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	121	474	0	ENST00000397062.3:c.1010_1012del	p.Ala337del	p.A337del	ENST00000397062	NM_006164.4	337	gCAGaa/gaa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371604	225371606	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	61	386	0	ENST00000264414.4:c.998_1000delGAG	p.Gly333del	p.G333del	ENST00000264414	NM_003590.4	333	gGAGaa/gaa																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	123	1124	3	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71064767	71064767	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	67	427	0	ENST00000318789.4:c.907T>G	p.Tyr303Asp	p.Y303D	ENST00000318789	NM_032682.5	303	Tat/Gat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448552	89448552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	91	494	0	ENST00000336596.2:c.1516G>A	p.Val506Ile	p.V506I	ENST00000336596	NM_005233.5	506	Gta/Ata																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430873	181430873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	271	1125	0	ENST00000325404.1:c.725C>T	p.Ser242Leu	p.S242L	ENST00000325404	NM_003106.3	242	tCg/tTg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957837	1957837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	179	618	0	ENST00000382891.5:c.2803C>T	p.Arg935Ter	p.R935*	ENST00000382891	NM_133335.3	935	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1279449	1279449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	216	1124	0	ENST00000310581.5:c.2087G>A	p.Arg696His	p.R696H	ENST00000310581	NM_198253.2	696	cGt/cAt																																																																														
SESN1	27244	MSKCC	GRCh37	6	109321872	109321872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	60	383	1	ENST00000436639.2:c.551C>T	p.Ala184Val	p.A184V	ENST00000436639	NM_014454.2	184	gCg/gTg																																																																														
PARK2	0	MSKCC	GRCh37	6	162622179	162622179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	106	346	0	ENST00000366898.1:c.518C>T	p.Thr173Met	p.T173M	ENST00000366898	NM_004562.2	173	aCg/aTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	201	738	9	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194706	29194706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	202	1120	4	ENST00000240100.2:c.1022C>T	p.Ala341Val	p.A341V	ENST00000240100	NM_001394.6	341	gCg/gTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5089744	5089745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	40	193	0	ENST00000381652.3:c.2648dup	p.Leu884AlafsTer4	p.L884Afs*4	ENST00000381652	NM_004972.3	881	gta/gtAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27202997	27202997	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	44	515	0	ENST00000380036.4:c.2089T>C	p.Tyr697His	p.Y697H	ENST00000380036	NM_000459.3	697	Tat/Cat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039668	47039668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	179	1017	0	ENST00000329236.7:c.886G>A	p.Gly296Ser	p.G296S	ENST00000329236	NM_001204466.1	296	Ggc/Agc																																																																														
AR	367	MSKCC	GRCh37	X	66765149	66765151	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-	rs764402637		P-0046448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	20	361	1	ENST00000374690.3:c.170_172del	p.Leu57del	p.L57del	ENST00000374690	NM_000044.3	54	tTGCtg/ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000112-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	271	131	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187682	11187682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0000112-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	226	280	2	ENST00000361445.4:c.6215A>G	p.Gln2072Arg	p.Q2072R	ENST00000361445	NM_004958.3	2072	cAg/cGg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588770	52588770	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143564112		P-0000112-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	149	171	0	ENST00000394830.3:c.4258G>A	p.Val1420Met	p.V1420M	ENST00000394830	NM_018313.4	1420	Gtg/Atg																																																																														
NBN	4683	MSKCC	GRCh37	8	90990461	90990461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000112-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			810	183	436	2	ENST00000265433.3:c.571C>G	p.Pro191Ala	p.P191A	ENST00000265433	NM_002485.4	191	Cca/Gca																																																																														
AXL	558	MSKCC	GRCh37	19	41736935	41736935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000112-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	328	212	3	ENST00000301178.4:c.650G>A	p.Arg217His	p.R217H	ENST00000301178	NM_021913.4	217	cGc/cAc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000112-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	221	243	0	ENST00000379607.5:c.38G>T	p.Arg13Leu	p.R13L	ENST00000379607	NM_001412.3	13	cGc/cTc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120000	70120001	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000112-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			124	41	21	0	ENST00000245479.2:c.1003dupT	p.Trp335LeufsTer243	p.W335Lfs*243	ENST00000245479	NM_000346.3	334	-/T																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603062	48603063	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000112-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	107	152	0	ENST00000342988.3:c.1365dupA	p.Ala456SerfsTer38	p.A456Sfs*38	ENST00000342988	NM_005359.5	455	caa/cAaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	90	273	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			713	77	258	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	49	109	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138375049	138375049	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	79	181	0	ENST00000289153.2:c.3010T>A	p.Phe1004Ile	p.F1004I	ENST00000289153	NM_006219.2	1004	Ttt/Att																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564731	86564731	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1647	493	467	1	ENST00000274376.6:c.463G>T	p.Glu155Ter	p.E155*	ENST00000274376	NM_002890.2	155	Gaa/Taa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671462	30671462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			874	129	419	0	ENST00000376406.3:c.5498C>T	p.Ser1833Phe	p.S1833F	ENST00000376406	NM_014641.2	1833	tCc/tTc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370945	55370945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	66	231	0	ENST00000297316.4:c.247C>T	p.Arg83Cys	p.R83C	ENST00000297316	NM_022454.3	83	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485288	8485288	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	93	260	0	ENST00000356435.5:c.3092A>C	p.Lys1031Thr	p.K1031T	ENST00000356435		1031	aAg/aCg																																																																														
POLE	5426	MSKCC	GRCh37	12	133254247	133254247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			939	132	418	0	ENST00000320574.5:c.637G>A	p.Asp213Asn	p.D213N	ENST00000320574	NM_006231.2	213	Gac/Aac																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436921	110436921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	53	87	0	ENST00000375856.3:c.1480G>T	p.Asp494Tyr	p.D494Y	ENST00000375856	NM_003749.2	494	Gac/Tac																																																																														
NF1	4763	MSKCC	GRCh37	17	29528054	29528054	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	31	61	0	ENST00000358273.4:c.1063-1G>C		p.X355_splice	ENST00000358273	NM_001042492.2	355																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	119	269	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																														
MED12	9968	MSKCC	GRCh37	X	70356426	70356426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			976	103	466	2	ENST00000374080.3:c.5321C>A	p.Ala1774Asp	p.A1774D	ENST00000374080		1774	gCt/gAt																																																																														
CDH1	999	MSKCC	GRCh37	16	68844109	68844110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	93	251	0	ENST00000261769.5:c.698dupA	p.His233GlnfsTer11	p.H233Qfs*11	ENST00000261769	NM_004360.3	233	cac/cAac																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310871	123310871	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs755793		P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	25	441	0	ENST00000358487.5:c.557T>C	p.Met186Thr	p.M186T	ENST00000358487	NM_000141.4	186	aTg/aCg																																																																														
CD276	80381	MSKCC	GRCh37	15	73994806	73994806	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs7173448		P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	13	253	2	ENST00000318443.5:c.290C>T	p.Pro97Leu	p.P97L	ENST00000318443	NM_001024736.1	97	cCg/cTg																																																																														
MPL	4352	MSKCC	GRCh37	1	43805698	43805698	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs141311765		P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	28	312	1	ENST00000372470.3:c.754T>C	p.Tyr252His	p.Y252H	ENST00000372470	NM_005373.2	252	Tac/Cac																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743501	46743501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	17	182	0	ENST00000371975.4:c.1882G>A	p.Glu628Lys	p.E628K	ENST00000371975	NM_003579.3	628	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1293955	1293955	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	56	300	0	ENST00000310581.5:c.1046C>G	p.Ser349Cys	p.S349C	ENST00000310581	NM_198253.2	349	tCt/tGt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180039583	180039583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75614493		P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	19	439	0	ENST00000261937.6:c.3460G>A	p.Gly1154Arg	p.G1154R	ENST00000261937	NM_182925.4	1154	Gga/Aga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522223	157522223	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs34870395		P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	18	194	0	ENST00000346085.5:c.4495A>T	p.Met1499Leu	p.M1499L	ENST00000346085	NM_020732.3	1499	Atg/Ttg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38318621	38318621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	10	323	0	ENST00000425967.3:c.4G>C	p.Glu2Gln	p.E2Q	ENST00000425967	NM_001174067.1	2	Gag/Cag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739679	145739679	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2721191		P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	26	222	0	ENST00000428558.2:c.1772C>T	p.Pro591Leu	p.P591L	ENST00000428558	NM_004260.3	591	cCt/cTt																																																																														
WT1	7490	MSKCC	GRCh37	11	32456500	32456500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			25	10	31	0	ENST00000332351.3:c.392C>T	p.Pro131Leu	p.P131L	ENST00000332351	NM_024426.4	131	cCc/cTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343304	118343304	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	41	236	0	ENST00000534358.1:c.1430C>G	p.Ser477Cys	p.S477C	ENST00000534358	NM_005933.3	477	tCt/tGt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112554	115112554	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs78115331		P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	18	416	0	ENST00000257566.3:c.1186T>A	p.Ser396Thr	p.S396T	ENST00000257566	NM_016569.3	396	Tcc/Acc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578209	28578209	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs74041526		P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	28	411	0	ENST00000241453.7:c.2962G>C	p.Ala988Pro	p.A988P	ENST00000241453	NM_004119.2	988	Gct/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			89	108	196	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	16	188	0	ENST00000407977.2:c.1976G>A	p.Gly659Asp	p.G659D	ENST00000407977		659	gGt/gAt																																																																														
STK11	6794	MSKCC	GRCh37	19	1223059	1223059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	128	381	0	ENST00000326873.7:c.996G>A	p.Trp332Ter	p.W332*	ENST00000326873	NM_000455.4	332	tgG/tgA																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214724	5214724	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	107	291	0	ENST00000357368.4:c.4342A>T	p.Asn1448Tyr	p.N1448Y	ENST00000357368	NM_002850.3	1448	Aat/Tat																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375067	31375067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	130	295	2	ENST00000328111.2:c.464G>T	p.Gly155Val	p.G155V	ENST00000328111	NM_006892.3	155	gGa/gTa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599938	10599938	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	218	578	0	ENST00000171111.5:c.1638del	p.Phe546LeufsTer2	p.F546Lfs*2	ENST00000171111	NM_203500.1	546	ttC/tt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251749	212251749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	50	151	0	ENST00000342788.4:c.3310G>A	p.Asp1104Asn	p.D1104N	ENST00000342788	NM_005235.2	1104	Gac/Aac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259324	89259324	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	49	216	0	ENST00000336596.2:c.468T>A	p.Asp156Glu	p.D156E	ENST00000336596	NM_005233.5	156	gaT/gaA																																																																														
KDR	3791	MSKCC	GRCh37	4	55987327	55987327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	28	171	0	ENST00000263923.4:c.98G>T	p.Arg33Met	p.R33M	ENST00000263923	NM_002253.2	33	aGg/aTg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752871	57752871	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	115	131	0	ENST00000274289.3:c.1057G>C	p.Asp353His	p.D353H	ENST00000274289	NM_006622.3	353	Gat/Cat																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754920	57754920	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	143	158	0	ENST00000274289.3:c.271-1G>A		p.X91_splice	ENST00000274289	NM_006622.3	91																																																																															
ESR1	2099	MSKCC	GRCh37	6	152129123	152129123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	150	371	0	ENST00000206249.3:c.76C>A	p.Leu26Met	p.L26M	ENST00000206249	NM_000125.3	26	Ctg/Atg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432038	121432038	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	311	228	0	ENST00000257555.6:c.785T>A	p.Val262Glu	p.V262E	ENST00000257555		262	gTg/gAg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73352498	73352498	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	101	232	0	ENST00000377767.4:c.407A>T	p.Glu136Val	p.E136V	ENST00000377767	NM_014953.3	136	gAa/gTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273853	10273853	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	43	128	0	ENST00000330684.3:c.414+2T>G		p.X138_splice	ENST00000330684	NM_001134407.1	138																																																																															
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	352	170	0	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40713345	40713345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	137	162	0	ENST00000373198.4:c.4170G>T	p.Glu1390Asp	p.E1390D	ENST00000373198	NM_133170.3	1390	gaG/gaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743895	40743895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	152	170	0	ENST00000373198.4:c.3100C>A	p.Leu1034Met	p.L1034M	ENST00000373198	NM_133170.3	1034	Ctg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112179012	112179013	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			104	122	127	0	ENST00000257430.4:c.7722_7723del	p.Ser2575CysfsTer7	p.S2575Cfs*7	ENST00000257430	NM_000038.5	2574	cTT/c																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602354	10602354	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	322	281	0	ENST00000171111.5:c.1224del	p.Met409Ter	p.M409*	ENST00000171111	NM_203500.1	408	ccC/cc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0001447-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			42	13	15	0	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852029	63852029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001447-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			48	27	135	0	ENST00000279873.7:c.2807G>T	p.Gly936Val	p.G936V	ENST00000279873	NM_032199.2	936	gGc/gTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044572	47044572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001447-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	14	378	0	ENST00000329236.7:c.1835C>T	p.Ala612Val	p.A612V	ENST00000329236	NM_001204466.1	612	gCa/gTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258973	153258973	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002249-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			54	15	395	0	ENST00000281708.4:c.842T>G	p.Ile281Ser	p.I281S	ENST00000281708	NM_033632.3	281	aTt/aGt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371692	55371708	+	frameshift_variant	Frame_Shift_Del	DEL	CACATGCAGGACCACCC	CACATGCAGGACCACCC	-			P-0002249-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			93	11	318	0	ENST00000297316.4:c.384_400del	p.His128GlnfsTer28	p.H128Qfs*28	ENST00000297316	NM_022454.3	128	CACATGCAGGACCACCCc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	30	363	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	273	350	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	106	121	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	106	121	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	61	301	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143043369	143043369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	24	314	2	ENST00000262992.4:c.2047G>A	p.Ala683Thr	p.A683T	ENST00000262992	NM_001101669.1	683	Gcc/Acc																																																																														
PARK2	0	MSKCC	GRCh37	6	162475170	162475170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	29	445	0	ENST00000366898.1:c.571C>T	p.Arg191Trp	p.R191W	ENST00000366898	NM_004562.2	191	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956956	2956956	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	129	195	0	ENST00000396946.4:c.2671C>T	p.Arg891Ter	p.R891*	ENST00000396946	NM_032415.4	891	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584572	48584572	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	59	301	0	ENST00000342988.3:c.745C>T	p.Gln249Ter	p.Q249*	ENST00000342988	NM_005359.5	249	Cag/Tag																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511172	148511172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	49	577	1	ENST00000320356.2:c.1730C>T	p.Pro577Leu	p.P577L	ENST00000320356	NM_004456.4	577	cCg/cTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933800	39933819	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCATGGGTGATGCCAAG	GCCTCATGGGTGATGCCAAG	-			P-0005978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	21	414	0	ENST00000378444.4:c.780_799delCTTGGCATCACCCATGAGGC	p.Ala262AspfsTer32	p.A262Dfs*32	ENST00000378444	NM_001123385.1	260	tcCTTGGCATCACCCATGAGGCtc/tctc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	54	171	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	100	144	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	100	144	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
RHOA	387	MSKCC	GRCh37	3	49412905	49412905	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	96	511	0	ENST00000418115.1:c.118G>C	p.Glu40Gln	p.E40Q	ENST00000418115	NM_001664.2	40	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	103	304	0	ENST00000269305.4:c.400T>A	p.Phe134Ile	p.F134I	ENST00000269305	NM_001126112.2	134	Ttt/Att																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	100	144	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CASP8	841	MSKCC	GRCh37	2	202149794	202149794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	90	356	0	ENST00000358485.4:c.1235A>G	p.Lys412Arg	p.K412R	ENST00000358485	NM_001080125.1	412	aAa/aGa																																																																														
IRF4	3662	MSKCC	GRCh37	6	395927	395927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	25	319	0	ENST00000380956.4:c.484C>T	p.Pro162Ser	p.P162S	ENST00000380956	NM_001195286.1	162	Cca/Tca																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912276	29912276	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0007574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	64	218	0	ENST00000376809.5:c.896-1G>C		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98270496	98270496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	102	303	0	ENST00000331920.6:c.148C>A	p.Leu50Met	p.L50M	ENST00000331920	NM_000264.3	50	Ctg/Atg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907297	32907297	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	49	376	0	ENST00000380152.3:c.1682G>T	p.Gly561Val	p.G561V	ENST00000380152		561	gGa/gTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185238	123185238	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	59	413	0	ENST00000218089.9:c.1190T>A	p.Val397Asp	p.V397D	ENST00000218089	NM_001042749.1	397	gTt/gAt																																																																														
TET1	80312	MSKCC	GRCh37	10	70333991	70333993	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0007574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	45	204	0	ENST00000373644.4:c.1902_1904del	p.Val635del	p.V635del	ENST00000373644	NM_030625.2	632	tcTGTt/tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			352	135	409	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			329	153	362	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047034	128047034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			532	217	570	1	ENST00000285398.2:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000285398	NM_000122.1	234	cGa/cAa																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308353	30308353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			493	190	552	0	ENST00000262643.3:c.367A>G	p.Lys123Glu	p.K123E	ENST00000262643	NM_001238.2	123	Aag/Gag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221996	1221996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			264	251	646	0	ENST00000326873.7:c.911G>C	p.Arg304Pro	p.R304P	ENST00000326873	NM_000455.4	304	cGg/cCg																																																																														
MPL	4352	MSKCC	GRCh37	1	43812477	43812477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			657	190	493	0	ENST00000372470.3:c.1180C>G	p.Pro394Ala	p.P394A	ENST00000372470	NM_005373.2	394	Cca/Gca																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123256048	123256048	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			431	172	463	0	ENST00000358487.5:c.1861A>T	p.Lys621Ter	p.K621*	ENST00000358487	NM_000141.4	621	Aaa/Taa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279603	123279603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			520	253	620	0	ENST00000358487.5:c.829G>T	p.Val277Phe	p.V277F	ENST00000358487	NM_000141.4	277	Gtc/Ttc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524625	103524625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			162	131	296	0	ENST00000355739.4:c.2756G>T	p.Arg919Leu	p.R919L	ENST00000355739	NM_000123.3	919	cGg/cTg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018107	48018107	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			625	268	617	0	ENST00000234420.5:c.302A>T	p.Glu101Val	p.E101V	ENST00000234420	NM_000179.2	101	gAg/gTg																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271225	26271225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			401	179	464	0	ENST00000305910.3:c.388C>A	p.Arg130Ser	p.R130S	ENST00000305910	NM_003534.2	130	Cgc/Agc																																																																														
TCEB1	0	MSKCC	GRCh37	8	74868211	74868211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1635	135	215	0	ENST00000284811.8:c.83A>C	p.Glu28Ala	p.E28A	ENST00000284811		28	gAa/gCa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400076	139400076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015489-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			673	285	796	0	ENST00000277541.6:c.4272G>T	p.Leu1424Phe	p.L1424F	ENST00000277541	NM_017617.3	1424	ttG/ttT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	188	572	0				ENST00000310581	NM_198253.2																																																																																
KIT	3815	MSKCC	GRCh37	4	55592192	55592192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	147	499	0	ENST00000288135.5:c.1516T>C	p.Phe506Leu	p.F506L	ENST00000288135	NM_000222.2	506	Ttt/Ctt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552823	106552823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	270	694	0	ENST00000369096.4:c.788G>A	p.Gly263Glu	p.G263E	ENST00000369096	NM_001198.3	263	gGa/gAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	552	437	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032279	10032279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	239	607	0	ENST00000330684.3:c.544G>A	p.Glu182Lys	p.E182K	ENST00000330684	NM_001134407.1	182	Gaa/Aaa																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246091330	246091330	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1437168377		P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	353	413	1	ENST00000388985.4:c.605C>T	p.Ser202Phe	p.S202F	ENST00000388985		202	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717633	89717634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	156	450	0	ENST00000371953.3:c.659dup	p.Val222GlyfsTer21	p.V222Gfs*21	ENST00000371953	NM_000314.4	220	cta/cTta																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560403	95560404	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	283	528	2	ENST00000343455.3:c.5185_5186delinsTT	p.Pro1729Leu	p.P1729L	ENST00000343455	NM_177438.2	1729	CCg/TTg																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40678608	40678608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	271	611	0	ENST00000249776.8:c.350C>T	p.Ser117Phe	p.S117F	ENST00000249776	NM_033286.3	117	tCc/tTc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54958155	54958155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	200	580	0	ENST00000312783.6:c.452G>A	p.Arg151Lys	p.R151K	ENST00000312783	NM_198436.1	151	aGa/aAa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37050310	37050310	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	125	422	0	ENST00000231790.2:c.459G>C	p.Glu153Asp	p.E153D	ENST00000231790	NM_000249.3	153	gaG/gaC																																																																														
KDR	3791	MSKCC	GRCh37	4	55953780	55953780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	118	497	0	ENST00000263923.4:c.3656G>A	p.Gly1219Glu	p.G1219E	ENST00000263923	NM_002253.2	1219	gGa/gAa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981894	70981894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1292	330	685	0	ENST00000276594.2:c.202C>T	p.Pro68Ser	p.P68S	ENST00000276594	NM_024504.3	68	Ccc/Tcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	245	559	0	ENST00000304494.5:c.150+1G>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	245	559	0	ENST00000304494.5:c.150+1G>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041167	47041167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	331	726	1	ENST00000329236.7:c.1361C>T	p.Pro454Leu	p.P454L	ENST00000329236	NM_001204466.1	454	cCc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	229	589	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	184	637	0				ENST00000310581	NM_198253.2																																																																																
AXL	558	MSKCC	GRCh37	19	41765576	41765576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	210	866	0	ENST00000301178.4:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000301178	NM_021913.4	818	Gaa/Aaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164529	47164529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	126	516	0	ENST00000409792.3:c.1597C>T	p.Pro533Ser	p.P533S	ENST00000409792	NM_014159.6	533	Ccc/Tcc																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5534921	5534921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	185	572	0	ENST00000397747.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000397747	NM_025239.3	78	Gag/Aag																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88635833	88635833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	192	852	0	ENST00000372037.3:c.58C>T	p.Arg20Cys	p.R20C	ENST00000372037	NM_004329.2	20	Cgt/Tgt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609621	81609621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	225	688	0	ENST00000298171.2:c.1219C>T	p.Pro407Ser	p.P407S	ENST00000298171	NM_000369.2	407	Ccg/Tcg																																																																														
ERG	2078	MSKCC	GRCh37	21	39772529	39772529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	170	623	1	ENST00000288319.7:c.712C>T	p.Pro238Ser	p.P238S	ENST00000288319	NM_182918.3	238	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002840	69002840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	101	363	0	ENST00000288368.4:c.2140C>T	p.His714Tyr	p.H714Y	ENST00000288368	NM_024870.2	714	Cac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	188	718	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	8	528	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	444	1143	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770594	40770594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	195	854	0	ENST00000373198.4:c.2788G>A	p.Glu930Lys	p.E930K	ENST00000373198	NM_133170.3	930	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812293	212812293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	112	629	2	ENST00000342788.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000342788	NM_005235.2	95	Cgt/Tgt																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156732	20156732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	190	415	0	ENST00000379607.5:c.25G>C	p.Gly9Arg	p.G9R	ENST00000379607	NM_001412.3	9	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	220	768	1	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	220	768	1	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898732	134898732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	165	612	0	ENST00000398015.3:c.1790C>T	p.Pro597Leu	p.P597L	ENST00000398015	NM_004441.4	597	cCc/cTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253844	153253844	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	140	682	0	ENST00000281708.4:c.889G>T	p.Glu297Ter	p.E297*	ENST00000281708	NM_033632.3	297	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907162	32907162	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	148	681	1	ENST00000380152.3:c.1547T>A	p.Phe516Tyr	p.F516Y	ENST00000380152		516	tTc/tAc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519100	103519100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	247	940	0	ENST00000355739.4:c.2438T>C	p.Ile813Thr	p.I813T	ENST00000355739	NM_000123.3	813	aTc/aCc																																																																														
BLM	641	MSKCC	GRCh37	15	91312675	91312675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	126	531	0	ENST00000355112.3:c.2414A>G	p.His805Arg	p.H805R	ENST00000355112	NM_000057.2	805	cAt/cGt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346247	89346247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	155	496	3	ENST00000301030.4:c.6703C>T	p.Pro2235Ser	p.P2235S	ENST00000301030	NM_001256183.1	2235	Ccg/Tcg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244303	153244303	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	74	335	0	ENST00000281708.4:c.1856-2A>G		p.X619_splice	ENST00000281708	NM_033632.3	619																																																																															
MDC1	9656	MSKCC	GRCh37	6	30672488	30672488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	356	1176	1	ENST00000376406.3:c.4472C>T	p.Pro1491Leu	p.P1491L	ENST00000376406	NM_014641.2	1491	cCc/cTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553422	106553422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	108	525	0	ENST00000369096.4:c.1387C>T	p.Pro463Ser	p.P463S	ENST00000369096	NM_001198.3	463	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500768	8500768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	165	619	0	ENST00000356435.5:c.2114G>A	p.Arg705Gln	p.R705Q	ENST00000356435		705	cGa/cAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27183477	27183477	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	180	838	2	ENST00000380036.4:c.1051A>C	p.Lys351Gln	p.K351Q	ENST00000380036	NM_000459.3	351	Aag/Cag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231215	98231215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	348	1001	3	ENST00000331920.6:c.2068G>A	p.Val690Ile	p.V690I	ENST00000331920	NM_000264.3	690	Gtc/Atc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15821917	15821917	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	203	339	0	ENST00000307771.7:c.310G>A	p.Glu104Lys	p.E104K	ENST00000307771	NM_005089.3	104	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	353	561	0				ENST00000310581	NM_198253.2																																																																																
BRIP1	83990	MSKCC	GRCh37	17	59820400	59820400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	366	586	0	ENST00000259008.2:c.2353C>T	p.Pro785Ser	p.P785S	ENST00000259008	NM_032043.2	785	Cct/Tct																																																																														
IL7R	3575	MSKCC	GRCh37	5	35875645	35875645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201449880		P-0022570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	334	565	1	ENST00000303115.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000303115	NM_002185.3	278	Gat/Aat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692971	89693004	+	frameshift_variant	Frame_Shift_Del	DEL	TAGATTTCTATGGGGAAGTAAGGACCAGAGACAA	TAGATTTCTATGGGGAAGTAAGGACCAGAGACAA	-			P-0022570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	287	561	1	ENST00000371953.3:c.455_488del	p.Leu152GlnfsTer4	p.L152Qfs*4	ENST00000371953	NM_000314.4	152	cTAGATTTCTATGGGGAAGTAAGGACCAGAGACAAa/ca																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563438	21563438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	649	920	0	ENST00000382592.4:c.481G>A	p.Gly161Arg	p.G161R	ENST00000382592	NM_014572.2	161	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790011	40790011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	324	550	0	ENST00000373198.4:c.2720G>A	p.Gly907Glu	p.G907E	ENST00000373198	NM_133170.3	907	gGg/gAg																																																																														
SMO	6608	MSKCC	GRCh37	7	128846390	128846390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	428	710	1	ENST00000249373.3:c.1226G>A	p.Gly409Asp	p.G409D	ENST00000249373	NM_005631.4	409	gGc/gAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317933	8317933	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	271	460	0	ENST00000356435.5:c.5680C>T	p.Gln1894Ter	p.Q1894*	ENST00000356435		1894	Cag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70351967	70351968	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	470	411	0	ENST00000374080.3:c.4164_4165delinsAA	p.Val1389Ile	p.V1389I	ENST00000374080		1388	gaGGtt/gaAAtt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	308	540	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0022670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	144	389	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692800	89692800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	51	471	0	ENST00000371953.3:c.284C>T	p.Pro95Leu	p.P95L	ENST00000371953	NM_000314.4	95	cCa/cTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117632187	117632187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	69	677	0	ENST00000368508.3:c.6229C>T	p.His2077Tyr	p.H2077Y	ENST00000368508	NM_002944.2	2077	Cac/Tac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	9	660	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913409		P-0022689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	9	431	0	ENST00000349496.5:c.134C>G	p.Ser45Cys	p.S45C	ENST00000349496	NM_001904.3	45	tCt/tGt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139822	55139822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	25	702	2	ENST00000257290.5:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000257290	NM_006206.4	495	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859797	151859797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	18	502	0	ENST00000262189.6:c.10865C>T	p.Pro3622Leu	p.P3622L	ENST00000262189	NM_170606.2	3622	cCa/cTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532837	187532837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	14	833	0	ENST00000441802.2:c.9556C>T	p.Pro3186Ser	p.P3186S	ENST00000441802	NM_005245.3	3186	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112170762	112170765	+	frameshift_variant	Frame_Shift_Del	DEL	CTTA	CTTA	-			P-0022689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	12	897	0	ENST00000257430.4:c.1863_1866del	p.Tyr622GlyfsTer7	p.Y622Gfs*7	ENST00000257430	NM_000038.5	620	CTTAct/ct																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209312	98209312	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	25	995	0	ENST00000331920.6:c.4226T>A	p.Phe1409Tyr	p.F1409Y	ENST00000331920	NM_000264.3	1409	tTt/tAt																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20152120	20152120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	47	281	0	ENST00000379607.5:c.210G>T	p.Trp70Cys	p.W70C	ENST00000379607	NM_001412.3	70	tgG/tgT																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441261	52441261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	131	663	0	ENST00000460680.1:c.509T>G	p.Phe170Cys	p.F170C	ENST00000460680	NM_004656.3	170	tTt/tGt																																																																														
PARP1	142	MSKCC	GRCh37	1	226551675	226551675	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	168	749	1	ENST00000366794.5:c.2755A>G	p.Ile919Val	p.I919V	ENST00000366794	NM_001618.3	919	Atc/Gtc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442086	52442108	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTATCAGCTGTGAAACCAAGAA	GGTATCAGCTGTGAAACCAAGAA	-			P-0022726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	94	704	0	ENST00000460680.1:c.256-15_263del		p.X86_splice	ENST00000460680	NM_004656.3	86																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	25	746	1				ENST00000310581	NM_198253.2																																																																																
FAM46C	0	MSKCC	GRCh37	1	118166491	118166491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	33	517	0	ENST00000369448.3:c.1001C>T	p.Ser334Phe	p.S334F	ENST00000369448	NM_017709.3	334	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	42	987	0	ENST00000269305.4:c.1045del	p.Glu349AsnfsTer21	p.E349Nfs*21	ENST00000269305	NM_001126112.2	349	Gaa/aa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292390	15292390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	28	833	0	ENST00000263388.2:c.2789C>T	p.Pro930Leu	p.P930L	ENST00000263388	NM_000435.2	930	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29546085	29546086	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0022743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	50	680	1	ENST00000358273.4:c.1590_1591delinsTT	p.Gln531Ter	p.Q531*	ENST00000358273	NM_001042492.2	530	gtCCaa/gtTTaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292389	15292390	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	29	830	3	ENST00000263388.2:c.2789_2790delinsTT	p.Pro930Leu	p.P930L	ENST00000263388	NM_000435.2	930	cCC/cTT																																																																														
SRC	6714	MSKCC	GRCh37	20	36031600	36031600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	42	892	2	ENST00000358208.4:c.1429C>T	p.Gln477Ter	p.Q477*	ENST00000358208		477	Cag/Tag																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			500	72	484	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			84	29	216	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			363	56	377	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663425	67663425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			223	32	201	0	ENST00000264010.4:c.1826C>T	p.Ser609Phe	p.S609F	ENST00000264010	NM_006565.3	609	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120360	94120360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			158	14	278	0	ENST00000369303.4:c.691C>T	p.Arg231Ter	p.R231*	ENST00000369303	NM_004440.3	231	Cga/Tga																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68331729	68331729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			141	26	208	0	ENST00000487270.1:c.325C>T	p.Pro109Ser	p.P109S	ENST00000487270	NM_133509.3	109	Cca/Tca																																																																														
BLM	641	MSKCC	GRCh37	15	91292713	91292713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			342	75	400	1	ENST00000355112.3:c.215C>T	p.Ser72Phe	p.S72F	ENST00000355112	NM_000057.2	72	tCc/tTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188404	32188404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			303	30	472	0	ENST00000375023.3:c.937G>A	p.Glu313Lys	p.E313K	ENST00000375023	NM_004557.3	313	Gaa/Aaa																																																																														
PGR	5241	MSKCC	GRCh37	11	100999743	100999743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			219	36	648	0	ENST00000325455.5:c.59C>T	p.Ser20Phe	p.S20F	ENST00000325455	NM_001202474.3	20	tCc/tTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436461	110436461	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			335	89	814	0	ENST00000375856.3:c.1940T>C	p.Leu647Pro	p.L647P	ENST00000375856	NM_003749.2	647	cTg/cCg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609638	81609638	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200182253		P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			317	71	529	0	ENST00000298171.2:c.1236G>A	p.Met412Ile	p.M412I	ENST00000298171	NM_000369.2	412	atG/atA																																																																														
NUP93	9688	MSKCC	GRCh37	16	56852601	56852601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			420	87	512	0	ENST00000308159.5:c.515C>T	p.Pro172Leu	p.P172L	ENST00000308159	NM_014669.4	172	cCc/cTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346954	89346954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			117	31	299	0	ENST00000301030.4:c.5996C>T	p.Pro1999Leu	p.P1999L	ENST00000301030	NM_001256183.1	1999	cCc/cTc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110557	4110558	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			287	118	599	1	ENST00000262948.5:c.399_400delinsTC	p.Tyr134His	p.Y134H	ENST00000262948	NM_030662.3	133	ttCTac/ttTCac																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46267915	46267915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			352	60	536	0	ENST00000371998.3:c.2676G>A	p.Met892Ile	p.M892I	ENST00000371998		892	atG/atA																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149452874	149452874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			306	62	489	0	ENST00000286301.3:c.1072G>A	p.Asp358Asn	p.D358N	ENST00000286301	NM_005211.3	358	Gac/Aac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965635	93965635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			251	18	445	0	ENST00000369303.4:c.2293C>T	p.Leu765Phe	p.L765F	ENST00000369303	NM_004440.3	765	Ctt/Ttt																																																																														
MET	4233	MSKCC	GRCh37	7	116339782	116339782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			354	65	439	0	ENST00000397752.3:c.644C>T	p.Ser215Leu	p.S215L	ENST00000397752	NM_000245.2	215	tCa/tTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484259	8484260	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			280	59	549	0	ENST00000356435.5:c.3272_3273delinsAA	p.Ser1091Lys	p.S1091K	ENST00000356435		1091	aGT/aAA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928948	44928948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022807-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			176	10	211	0	ENST00000377967.4:c.2048C>T	p.Pro683Leu	p.P683L	ENST00000377967	NM_021140.2	683	cCc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	441	576	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	158	946	0				ENST00000310581	NM_198253.2																																																																																
CD276	80381	MSKCC	GRCh37	15	73996338	73996338	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs146707793		P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	92	359	1	ENST00000318443.5:c.1072G>A	p.Ala358Thr	p.A358T	ENST00000318443	NM_001024736.1	358	Gct/Act																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557881	187557881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	336	714	0	ENST00000441802.2:c.3830C>T	p.Thr1277Ile	p.T1277I	ENST00000441802	NM_005245.3	1277	aCc/aTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217306	123217306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	535	859	0	ENST00000218089.9:c.2960C>T	p.Pro987Leu	p.P987L	ENST00000218089	NM_001042749.1	987	cCg/cTg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276376	115276376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	467	878	0	ENST00000438362.2:c.952C>T	p.Pro318Ser	p.P318S	ENST00000438362	NM_001242891.1	318	Cca/Tca																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412088	63412088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	507	1329	0	ENST00000330258.3:c.1079C>T	p.Ser360Phe	p.S360F	ENST00000330258	NM_152424.3	360	tCc/tTc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940571	71940571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	300	981	1	ENST00000298229.2:c.722C>T	p.Ser241Leu	p.S241L	ENST00000298229	NM_001567.3	241	tCg/tTg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121437115	121437115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	311	1225	0	ENST00000257555.6:c.1546G>A	p.Gly516Ser	p.G516S	ENST00000257555		516	Ggc/Agc																																																																														
STK19	8859	MSKCC	GRCh37	6	31940142	31940142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	520	1335	1	ENST00000375331.2:c.284C>T	p.Ser95Phe	p.S95F	ENST00000375331	NM_004197.1	95	tCt/tTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117746795	117746795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	112	574	1	ENST00000368508.3:c.25C>T	p.Pro9Ser	p.P9S	ENST00000368508	NM_002944.2	9	Ccg/Tcg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860796	151860796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144248018		P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	81	550	1	ENST00000262189.6:c.9866C>T	p.Pro3289Leu	p.P3289L	ENST00000262189	NM_170606.2	3289	cCc/cTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879357	151879357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	197	558	0	ENST00000262189.6:c.5588C>T	p.Pro1863Leu	p.P1863L	ENST00000262189	NM_170606.2	1863	cCc/cTc																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538874	23538874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	268	534	1	ENST00000380871.4:c.565G>A	p.Gly189Arg	p.G189R	ENST00000380871	NM_006167.3	189	Gga/Aga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123159721	123159721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	271	679	0	ENST00000218089.9:c.76G>A	p.Asp26Asn	p.D26N	ENST00000218089	NM_001042749.1	26	Gat/Aat																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	10	421	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551502	150551502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	446	1368	0	ENST00000369026.2:c.505G>A	p.Glu169Lys	p.E169K	ENST00000369026	NM_021960.4	169	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	42042451	42042451	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	134	798	1	ENST00000219905.7:c.6646C>T	p.Gln2216Ter	p.Q2216*	ENST00000219905	NM_001164273.1	2216	Cag/Tag																																																																														
ERG	2078	MSKCC	GRCh37	21	39755732	39755732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	125	675	0	ENST00000288319.7:c.1033G>A	p.Asp345Asn	p.D345N	ENST00000288319	NM_182918.3	345	Gac/Aac																																																																														
MST1	4485	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	22	61	1	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922871	44922871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	112	315	0	ENST00000377967.4:c.1732C>T	p.Pro578Ser	p.P578S	ENST00000377967	NM_021140.2	578	Ccc/Tcc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730107	41730107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	214	543	0	ENST00000242208.4:c.422C>T	p.Ser141Phe	p.S141F	ENST00000242208	NM_002192.2	141	tCc/tTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100756	8100756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	141	1010	1	ENST00000346208.3:c.730C>T	p.Pro244Ser	p.P244S	ENST00000346208		244	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433955	49433955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	177	1057	1	ENST00000301067.7:c.7598C>T	p.Pro2533Leu	p.P2533L	ENST00000301067	NM_003482.3	2533	cCc/cTc																																																																														
MGA	23269	MSKCC	GRCh37	15	41991359	41991359	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	129	638	0	ENST00000219905.7:c.2188+2T>C		p.X730_splice	ENST00000219905	NM_001164273.1	730																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220920	36220920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	75	420	0	ENST00000222270.7:c.4970C>T	p.Ser1657Phe	p.S1657F	ENST00000222270	NM_014727.1	1657	tCc/tTc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39214652	39214652	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	143	801	0	ENST00000402219.2:c.3472C>T	p.Arg1158Ter	p.R1158*	ENST00000402219	NM_005633.3	1158	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41574655	41574655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	208	1352	0	ENST00000263253.7:c.6940C>T	p.Pro2314Ser	p.P2314S	ENST00000263253	NM_001429.3	2314	Cct/Tct																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644705	134644705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	144	748	2	ENST00000398015.3:c.106G>A	p.Ala36Thr	p.A36T	ENST00000398015	NM_004441.4	36	Gcc/Acc																																																																														
TP63	8626	MSKCC	GRCh37	3	189526308	189526308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	98	498	1	ENST00000264731.3:c.572C>A	p.Thr191Asn	p.T191N	ENST00000264731	NM_003722.4	191	aCc/aAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803099	1803099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	154	1049	1	ENST00000260795.2:c.451C>T	p.Pro151Ser	p.P151S	ENST00000260795		151	Cct/Tct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518844	187518844	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	75	566	0	ENST00000441802.2:c.12360G>T	p.Arg4120Ser	p.R4120S	ENST00000441802	NM_005245.3	4120	agG/agT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518854	187518854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	89	608	0	ENST00000441802.2:c.12350C>T	p.Ser4117Leu	p.S4117L	ENST00000441802	NM_005245.3	4117	tCg/tTg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665499	176665499	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	115	541	0	ENST00000439151.2:c.4183A>G	p.Lys1395Glu	p.K1395E	ENST00000439151	NM_022455.4	1395	Aaa/Gaa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185819	32185819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	211	1028	0	ENST00000375023.3:c.1577C>G	p.Ala526Gly	p.A526G	ENST00000375023	NM_004557.3	526	gCg/gGg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956625	93956625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	74	636	0	ENST00000369303.4:c.2611G>A	p.Asp871Asn	p.D871N	ENST00000369303	NM_004440.3	871	Gat/Aat																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444330	50444330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	159	458	0	ENST00000331340.3:c.260C>T	p.Ala87Val	p.A87V	ENST00000331340	NM_006060.4	87	gCc/gTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021663	69021663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	62	590	0	ENST00000288368.4:c.2951C>T	p.Pro984Leu	p.P984L	ENST00000288368	NM_024870.2	984	cCt/cTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	11	454	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	10	101	2	ENST00000331920.6:c.49_51delGGC	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	12	83	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-																																																																														
BRAF	673	MSKCC	GRCh37	7	140453135	140453136	+	missense_variant	Missense_Mutation	DNP	CA	CA	TT			P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	15	555	1	ENST00000288602.6:c.1799_1800delTGinsAA	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTG/gAA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174875	11174875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	46	804	0	ENST00000361445.4:c.7159A>G	p.Met2387Val	p.M2387V	ENST00000361445	NM_004958.3	2387	Atg/Gtg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259580	16259580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	51	632	0	ENST00000375759.3:c.6845C>T	p.Ser2282Phe	p.S2282F	ENST00000375759	NM_015001.2	2282	tCt/tTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285647	46285647	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	40	576	0	ENST00000334344.6:c.5007G>A	p.Trp1669Ter	p.W1669*	ENST00000334344	NM_152641.2	1669	tgG/tgA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437520	49437520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	58	712	1	ENST00000301067.7:c.5365C>T	p.Leu1789Phe	p.L1789F	ENST00000301067	NM_003482.3	1789	Ctt/Ttt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81939023	81939023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	32	467	0	ENST00000359376.3:c.1378C>T	p.Pro460Ser	p.P460S	ENST00000359376	NM_002661.3	460	Ccc/Tcc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965212	81965212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	70	755	1	ENST00000359376.3:c.2692G>A	p.Glu898Lys	p.E898K	ENST00000359376	NM_002661.3	898	Gag/Aag																																																																														
AKT2	208	MSKCC	GRCh37	19	40762883	40762883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	77	790	1	ENST00000392038.2:c.125C>T	p.Pro42Leu	p.P42L	ENST00000392038	NM_001626.4	42	cCc/cTc																																																																														
BBC3	27113	MSKCC	GRCh37	19	47731701	47731701	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	51	386	0	ENST00000449228.1:c.91C>T	p.Pro31Ser	p.P31S	ENST00000449228	NM_001127240.2	31	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295220	1295221	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	23	557	1				ENST00000310581	NM_198253.2																																																																																
STAG2	10735	MSKCC	GRCh37	X	123227989	123227989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	13	526	0	ENST00000218089.9:c.3700G>C	p.Asp1234His	p.D1234H	ENST00000218089	NM_001042749.1	1234	Gat/Cat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	238	886	0				ENST00000310581	NM_198253.2																																																																																
CARD11	84433	MSKCC	GRCh37	7	2969666	2969666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	109	1223	1	ENST00000396946.4:c.1613C>T	p.Ser538Phe	p.S538F	ENST00000396946	NM_032415.4	538	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419926	41419926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	90	741	1	ENST00000373198.4:c.395G>A	p.Gly132Glu	p.G132E	ENST00000373198	NM_133170.3	132	gGg/gAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306689	41306689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	140	940	0	ENST00000373198.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000373198	NM_133170.3	324	Gaa/Aaa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371749	55371749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	338	742	1	ENST00000297316.4:c.439C>T	p.Arg147Trp	p.R147W	ENST00000297316	NM_022454.3	147	Cgg/Tgg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876305	35876305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	171	660	1	ENST00000303115.3:c.1097C>T	p.Ser366Phe	p.S366F	ENST00000303115	NM_002185.3	366	tCc/tTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502728	149502728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	113	847	0	ENST00000261799.4:c.2060G>A	p.Gly687Glu	p.G687E	ENST00000261799	NM_002609.3	687	gGa/gAa																																																																														
CD79A	973	MSKCC	GRCh37	19	42383635	42383635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	379	769	0	ENST00000221972.3:c.410G>A	p.Gly137Glu	p.G137E	ENST00000221972	NM_021601.3	137	gGg/gAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862887	9862887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	75	840	0	ENST00000330684.3:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000330684	NM_001134407.1	806	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29559101	29559101	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	38	245	0	ENST00000358273.4:c.3208C>T	p.Gln1070Ter	p.Q1070*	ENST00000358273	NM_001042492.2	1070	Cag/Tag																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194616	29194616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	385	1408	0	ENST00000240100.2:c.1112C>T	p.Ser371Phe	p.S371F	ENST00000240100	NM_001394.6	371	tCc/tTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526580	106526580	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	135	518	0	ENST00000359195.3:c.2873G>A	p.Gly958Glu	p.G958E	ENST00000359195	NM_002649.2	958	gGa/gAa																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652446	206652446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	256	781	0	ENST00000367120.3:c.1153G>A	p.Ala385Thr	p.A385T	ENST00000367120	NM_014002.3	385	Gcc/Acc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982123	93982123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	62	522	0	ENST00000369303.4:c.1342G>A	p.Gly448Arg	p.G448R	ENST00000369303	NM_004440.3	448	Gga/Aga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570084	212570084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	160	667	0	ENST00000342788.4:c.1157C>T	p.Pro386Leu	p.P386L	ENST00000342788	NM_005235.2	386	cCa/cTa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1952803	1952803	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144714547		P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	199	510	2	ENST00000382891.5:c.1886C>T	p.Ser629Leu	p.S629L	ENST00000382891	NM_133335.3	629	tCg/tTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344888	118344888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	91	373	0	ENST00000534358.1:c.3014C>T	p.Ser1005Phe	p.S1005F	ENST00000534358	NM_005933.3	1005	tCc/tTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198262794	198262794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	142	555	0	ENST00000335508.6:c.3181G>A	p.Glu1061Lys	p.E1061K	ENST00000335508	NM_012433.2	1061	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341587	89341587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	217	715	0	ENST00000301030.4:c.7483C>T	p.Pro2495Ser	p.P2495S	ENST00000301030	NM_001256183.1	2495	Ccc/Tcc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11189880	11189880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	198	578	0	ENST00000361445.4:c.5629C>T	p.Leu1877Phe	p.L1877F	ENST00000361445	NM_004958.3	1877	Ctc/Ttc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255216	16255216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	205	516	1	ENST00000375759.3:c.2481G>T	p.Lys827Asn	p.K827N	ENST00000375759	NM_015001.2	827	aaG/aaT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262225	16262225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	24	249	0	ENST00000375759.3:c.9490C>T	p.Leu3164Phe	p.L3164F	ENST00000375759	NM_015001.2	3164	Ctt/Ttt																																																																														
SDHB	6390	MSKCC	GRCh37	1	17359614	17359614	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	96	664	0	ENST00000375499.3:c.227T>A	p.Leu76Ter	p.L76*	ENST00000375499	NM_003000.2	76	tTa/tAa																																																																														
STK40	83931	MSKCC	GRCh37	1	36807487	36807487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	356	1082	1	ENST00000373129.3:c.1177C>T	p.His393Tyr	p.H393Y	ENST00000373129	NM_032017.1	393	Cat/Tat																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46726657	46726658	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	69	607	1	ENST00000371975.4:c.736_737delinsAA	p.Gly246Lys	p.G246K	ENST00000371975	NM_003579.3	246	GGa/AAa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46738354	46738354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	204	778	1	ENST00000371975.4:c.1255C>T	p.Leu419Phe	p.L419F	ENST00000371975	NM_003579.3	419	Ctt/Ttt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571818	64571820	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	CA			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1378	112	1232	2	ENST00000337652.1:c.1834_1836delinsTG	p.Arg612Ter	p.R612*	ENST00000337652	NM_130803.2	612	CGC/TG																																																																														
MRE11A	0	MSKCC	GRCh37	11	94192597	94192597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	141	853	0	ENST00000323929.3:c.1477C>T	p.Leu493Phe	p.L493F	ENST00000323929	NM_005591.3	493	Ctc/Ttc																																																																														
ATM	472	MSKCC	GRCh37	11	108106419	108106419	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	23	245	0	ENST00000278616.4:c.354A>C	p.Gln118His	p.Q118H	ENST00000278616	NM_000051.3	118	caA/caC																																																																														
ATM	472	MSKCC	GRCh37	11	108202220	108202220	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	40	644	0	ENST00000278616.4:c.7565A>G	p.Gln2522Arg	p.Q2522R	ENST00000278616	NM_000051.3	2522	cAa/cGa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343640	118343640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	148	648	2	ENST00000534358.1:c.1766C>T	p.Thr589Ile	p.T589I	ENST00000534358	NM_005933.3	589	aCa/aTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375896	118375896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	127	615	0	ENST00000534358.1:c.9289C>T	p.Leu3097Phe	p.L3097F	ENST00000534358	NM_005933.3	3097	Ctt/Ttt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28897016	28897016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	203	757	0	ENST00000282397.4:c.2864C>T	p.Pro955Leu	p.P955L	ENST00000282397	NM_002019.4	955	cCa/cTa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73350109	73350109	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	187	763	0	ENST00000377767.4:c.776T>C	p.Leu259Ser	p.L259S	ENST00000377767	NM_014953.3	259	tTg/tCg																																																																														
MGA	23269	MSKCC	GRCh37	15	42034749	42034749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	132	399	0	ENST00000219905.7:c.4591C>T	p.Arg1531Ter	p.R1531*	ENST00000219905	NM_001164273.1	1531	Cga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762171	43762171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	297	1079	0	ENST00000382044.4:c.1274C>T	p.Pro425Leu	p.P425L	ENST00000382044	NM_001141980.1	425	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916206	9916206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	89	727	0	ENST00000330684.3:c.2083C>T	p.Arg695Trp	p.R695W	ENST00000330684	NM_001134407.1	695	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992756	72992756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	223	870	0	ENST00000268489.5:c.1289C>T	p.Ser430Phe	p.S430F	ENST00000268489	NM_006885.3	430	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29592261	29592262	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	79	304	1	ENST00000358273.4:c.4742_4743del	p.Lys1581ArgfsTer40	p.K1581Rfs*40	ENST00000358273	NM_001042492.2	1580	gAA/g																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30323816	30323816	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	74	334	0	ENST00000322652.5:c.1795-1G>A		p.X599_splice	ENST00000322652	NM_015355.2	599																																																																															
INSR	3643	MSKCC	GRCh37	19	7267791	7267791	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	83	942	0	ENST00000302850.5:c.217T>A	p.Phe73Ile	p.F73I	ENST00000302850	NM_000208.2	73	Ttc/Atc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265709	10265709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	103	704	0	ENST00000340748.4:c.1468G>A	p.Asp490Asn	p.D490N	ENST00000340748		490	Gat/Aat																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602408	10602409	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1587	241	1339	2	ENST00000171111.5:c.1169_1170delinsTT	p.Ser390Phe	p.S390F	ENST00000171111	NM_203500.1	390	tCC/tTT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11137006	11137006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	177	1069	0	ENST00000344626.4:c.3199G>T	p.Gly1067Cys	p.G1067C	ENST00000344626	NM_003072.3	1067	Ggc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284919	15284919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	213	1408	1	ENST00000263388.2:c.4696G>A	p.Glu1566Lys	p.E1566K	ENST00000263388	NM_000435.2	1566	Gaa/Aaa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18971718	18971718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	398	1052	0	ENST00000262803.5:c.2384C>T	p.Pro795Leu	p.P795L	ENST00000262803	NM_002911.3	795	cCc/cTc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257968	19257968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1394	123	1674	0	ENST00000162023.5:c.418C>T	p.Pro140Ser	p.P140S	ENST00000162023		140	Cca/Tca																																																																														
ALK	238	MSKCC	GRCh37	2	29455272	29455272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	182	743	0	ENST00000389048.3:c.2530G>A	p.Gly844Ser	p.G844S	ENST00000389048	NM_004304.4	844	Ggt/Agt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537939	212537939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	177	652	0	ENST00000342788.4:c.1666G>A	p.Asp556Asn	p.D556N	ENST00000342788	NM_005235.2	556	Gac/Aac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566728	212566728	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	133	493	0	ENST00000342788.4:c.1453A>G	p.Ile485Val	p.I485V	ENST00000342788	NM_005235.2	485	Ata/Gta																																																																														
PAK7	0	MSKCC	GRCh37	20	9525123	9525123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	136	592	0	ENST00000353224.5:c.1762G>A	p.Gly588Ser	p.G588S	ENST00000353224	NM_177990.2	588	Ggt/Agt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420106	41420106	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	76	340	0	ENST00000373198.4:c.215G>A	p.Gly72Glu	p.G72E	ENST00000373198	NM_133170.3	72	gGa/gAa																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434218	12434218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	228	710	0	ENST00000287820.6:c.586C>T	p.Gln196Ter	p.Q196*	ENST00000287820	NM_015869.4	196	Cag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623223	52623224	+	missense_variant	Missense_Mutation	DNP	AA	AA	GG			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	158	595	0	ENST00000394830.3:c.2827_2828delinsCC	p.Leu943Pro	p.L943P	ENST00000394830	NM_018313.4	943	TTa/CCa																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114745	73114745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	38	313	1	ENST00000356692.5:c.1126G>A	p.Asp376Asn	p.D376N	ENST00000356692		376	Gac/Aac																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670546	134670546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	188	1034	0	ENST00000398015.3:c.457G>A	p.Gly153Arg	p.G153R	ENST00000398015	NM_004441.4	153	Gga/Aga																																																																														
ATR	545	MSKCC	GRCh37	3	142279184	142279184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	158	720	0	ENST00000350721.4:c.1462G>C	p.Glu488Gln	p.E488Q	ENST00000350721	NM_001184.3	488	Gag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295219	1295219	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	97	682	1				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112176077	112176077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	224	518	0	ENST00000257430.4:c.4786C>G	p.Gln1596Glu	p.Q1596E	ENST00000257430	NM_000038.5	1596	Cag/Gag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190812	32190812	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	779	1352	0	ENST00000375023.3:c.125T>A	p.Leu42Gln	p.L42Q	ENST00000375023	NM_004557.3	42	cTg/cAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715844	117715844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	170	667	1	ENST00000368508.3:c.914C>T	p.Ser305Phe	p.S305F	ENST00000368508	NM_002944.2	305	tCt/tTt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962358	2962359	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	195	939	3	ENST00000396946.4:c.2178_2179delinsTT	p.Pro727Ser	p.P727S	ENST00000396946	NM_032415.4	726	gtCCcg/gtTTcg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878667	151878667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	87	578	0	ENST00000262189.6:c.6278C>T	p.Pro2093Leu	p.P2093L	ENST00000262189	NM_170606.2	2093	cCa/cTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021843	69021843	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	331	650	0	ENST00000288368.4:c.3131T>C	p.Val1044Ala	p.V1044A	ENST00000288368	NM_024870.2	1044	gTt/gCt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69032513	69032513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	217	814	0	ENST00000288368.4:c.3587G>A	p.Gly1196Glu	p.G1196E	ENST00000288368	NM_024870.2	1196	gGa/gAa																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5557638	5557638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	235	756	0	ENST00000397747.3:c.652C>T	p.His218Tyr	p.H218Y	ENST00000397747	NM_025239.3	218	Cat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485782	8485782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	56	335	0	ENST00000356435.5:c.3035G>A	p.Arg1012Lys	p.R1012K	ENST00000356435		1012	aGg/aAg																																																																														
TEK	7010	MSKCC	GRCh37	9	27157829	27157829	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	124	590	0	ENST00000380036.4:c.53G>A	p.Gly18Glu	p.G18E	ENST00000380036	NM_000459.3	18	gGa/gAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211440	98211440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	108	766	1	ENST00000331920.6:c.3715C>T	p.Arg1239Trp	p.R1239W	ENST00000331920	NM_000264.3	1239	Cgg/Tgg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044853	47044853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	247	684	1	ENST00000329236.7:c.1945G>A	p.Gly649Arg	p.G649R	ENST00000329236	NM_001204466.1	649	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	178	404	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	319	591	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	162	333	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9561418	9561418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	195	471	0	ENST00000353224.5:c.364G>A	p.Glu122Lys	p.E122K	ENST00000353224	NM_177990.2	122	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	102	510	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306721	41306721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	191	544	1	ENST00000373198.4:c.938C>T	p.Ser313Phe	p.S313F	ENST00000373198	NM_133170.3	313	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	159	439	1	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633430	8633430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	104	383	1	ENST00000356435.5:c.239C>T	p.Ser80Leu	p.S80L	ENST00000356435		80	tCa/tTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486082	8486082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	209	438	1	ENST00000356435.5:c.2735C>T	p.Ser912Phe	p.S912F	ENST00000356435		912	tCc/tTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967255	134967255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	207	542	0	ENST00000398015.3:c.2594G>A	p.Arg865Gln	p.R865Q	ENST00000398015	NM_004441.4	865	cGg/cAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69011995	69011995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	213	650	0	ENST00000288368.4:c.2632C>T	p.Pro878Ser	p.P878S	ENST00000288368	NM_024870.2	878	Cct/Tct																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39550298	39550298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	21	268	0	ENST00000262039.4:c.409C>T	p.Arg137Cys	p.R137C	ENST00000262039	NM_002647.2	137	Cgc/Tgc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633539	69633539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	155	392	0	ENST00000334134.2:c.163C>T	p.His55Tyr	p.H55Y	ENST00000334134	NM_005247.2	55	Cac/Tac																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281249	49281249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	331	579	0	ENST00000282018.3:c.296T>C	p.Leu99Pro	p.L99P	ENST00000282018	NM_020377.2	99	cTt/cCt																																																																														
NF1	4763	MSKCC	GRCh37	17	29701154	29701154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	164	328	0	ENST00000358273.4:c.8501G>A	p.Ser2834Asn	p.S2834N	ENST00000358273	NM_001042492.2	2834	aGc/aAc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40447646	40447646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	228	474	0	ENST00000345506.4:c.385C>T	p.Pro129Ser	p.P129S	ENST00000345506	NM_003152.3	129	Ccg/Tcg																																																																														
INSR	3643	MSKCC	GRCh37	19	7172313	7172313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	35	414	0	ENST00000302850.5:c.1256C>T	p.Thr419Ile	p.T419I	ENST00000302850	NM_000208.2	419	aCc/aTc																																																																														
MITF	4286	MSKCC	GRCh37	3	70014100	70014100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	39	502	0	ENST00000352241.4:c.1264C>T	p.Leu422Phe	p.L422F	ENST00000352241	NM_198159.2	422	Ctt/Ttt																																																																														
TP63	8626	MSKCC	GRCh37	3	189590717	189590717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	231	507	1	ENST00000264731.3:c.1282C>T	p.Pro428Ser	p.P428S	ENST00000264731	NM_003722.4	428	Cct/Tct																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748210	41748210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	259	539	0	ENST00000226382.2:c.559G>A	p.Ala187Thr	p.A187T	ENST00000226382	NM_003924.3	187	Gcc/Acc																																																																														
KDR	3791	MSKCC	GRCh37	4	55976878	55976879	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	214	554	1	ENST00000263923.4:c.1033_1034delinsAA	p.Gly345Lys	p.G345K	ENST00000263923	NM_002253.2	345	GGg/AAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1293829	1293829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	215	727	0	ENST00000310581.5:c.1172C>T	p.Pro391Leu	p.P391L	ENST00000310581	NM_198253.2	391	cCc/cTc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876281	35876281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	178	460	1	ENST00000303115.3:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000303115	NM_002185.3	358	cCa/cTa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803418	32803418	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	209	514	0	ENST00000374899.4:c.739+2T>C		p.X247_splice	ENST00000374899	NM_018833.2	247																																																																															
INHBA	3624	MSKCC	GRCh37	7	41739834	41739834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	191	452	0	ENST00000242208.4:c.139G>T	p.Val47Leu	p.V47L	ENST00000242208	NM_002192.2	47	Gta/Tta																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046482	69046482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	200	530	0	ENST00000288368.4:c.3955C>T	p.His1319Tyr	p.H1319Y	ENST00000288368	NM_024870.2	1319	Cac/Tac																																																																														
SYK	6850	MSKCC	GRCh37	9	93640035	93640035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	118	332	0	ENST00000375746.1:c.1364C>T	p.Pro455Leu	p.P455L	ENST00000375746	NM_001174167.1	455	cCc/cTc																																																																														
ATM	472	MSKCC	GRCh37	11	108201008	108201008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	211	807	0	ENST00000278616.4:c.7375C>T	p.Arg2459Cys	p.R2459C	ENST00000278616	NM_000051.3	2459	Cgt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46215202	46215202	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	146	506	0	ENST00000334344.6:c.638-1G>A		p.X213_splice	ENST00000334344	NM_152641.2	213																																																																															
TP63	8626	MSKCC	GRCh37	3	189607257	189607257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	478	913	0	ENST00000264731.3:c.1636G>A	p.Asp546Asn	p.D546N	ENST00000264731	NM_003722.4	546	Gat/Aat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144679	55144679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	288	612	1	ENST00000257290.5:c.2153G>A	p.Arg718Gln	p.R718Q	ENST00000257290	NM_006206.4	718	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534464	187534464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	318	675	1	ENST00000441802.2:c.9262G>A	p.Glu3088Lys	p.E3088K	ENST00000441802	NM_005245.3	3088	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	223	496	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35873670	35873670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	310	760	1	ENST00000303115.3:c.626C>T	p.Pro209Leu	p.P209L	ENST00000303115	NM_002185.3	209	cCt/cTt																																																																														
HGF	3082	MSKCC	GRCh37	7	81372744	81372744	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	277	678	0	ENST00000222390.5:c.790G>C	p.Asp264His	p.D264H	ENST00000222390	NM_000601.4	264	Gat/Cat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0023139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	252	850	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046482	69046482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	384	942	1	ENST00000288368.4:c.3955C>T	p.His1319Tyr	p.H1319Y	ENST00000288368	NM_024870.2	1319	Cac/Tac																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	329	544	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2224042	2224042	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	341	737	0	ENST00000326181.6:c.1256C>G	p.Thr419Ser	p.T419S	ENST00000326181	NM_032271.2	419	aCc/aGc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443729	52443729	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0023252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	475	941	0	ENST00000460680.1:c.67+1G>T		p.X23_splice	ENST00000460680	NM_004656.3	23																																																																															
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	57	555	0	ENST00000286548.4:c.626A>G	p.Gln209Arg	p.Q209R	ENST00000286548	NM_002072.3	209	cAa/cGa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443710	52443729	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CAGGGAGAAAAGGCTCTTAC	CAGGGAGAAAAGGCTCTTAC	-			P-0023343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	62	787	0	ENST00000460680.1:c.67+1_67+20del		p.X23_splice	ENST00000460680	NM_004656.3	23																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	129	548	0				ENST00000310581	NM_198253.2																																																																																
PAK7	0	MSKCC	GRCh37	20	9546847	9546847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	132	508	0	ENST00000353224.5:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000353224	NM_177990.2	392	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	80	533	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	28	368	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	122	663	0	ENST00000344626.4:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000344626	NM_003072.3	882	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106164773	106164773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	130	488	0	ENST00000380013.4:c.3641G>A	p.Arg1214Gln	p.R1214Q	ENST00000380013	NM_001127208.2	1214	cGg/cAg																																																																														
TET2	54790	MSKCC	GRCh37	4	106197443	106197443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	32	301	0	ENST00000380013.4:c.5776C>T	p.Arg1926Cys	p.R1926C	ENST00000380013	NM_001127208.2	1926	Cgt/Tgt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483911	88483911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	191	700	0	ENST00000360948.2:c.1659C>A	p.Phe553Leu	p.F553L	ENST00000360948	NM_001012338.2	553	ttC/ttA																																																																														
IL10	3586	MSKCC	GRCh37	1	206944716	206944742	+	inframe_deletion	In_Frame_Del	DEL	CAAGGACTCCTTTAACAACAAGTTGTC	CAAGGACTCCTTTAACAACAAGTTGTC	-			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	169	541	0	ENST00000423557.1:c.184_210del	p.Asp62_Leu70del	p.D62_L70del	ENST00000423557	NM_000572.2	62	GACAACTTGTTGTTAAAGGAGTCCTTG/-																																																																														
ATM	472	MSKCC	GRCh37	11	108165708	108165708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	191	447	1	ENST00000278616.4:c.4831C>T	p.Leu1611Phe	p.L1611F	ENST00000278616	NM_000051.3	1611	Ctt/Ttt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125514488	125514488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	179	446	0	ENST00000428830.2:c.1183G>A	p.Glu395Lys	p.E395K	ENST00000428830	NM_001114121.2	395	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433543	49433544	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	103	873	2	ENST00000301067.7:c.8009_8010delinsTT	p.Ser2670Phe	p.S2670F	ENST00000301067	NM_003482.3	2670	tCC/tTT																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623673	28623673	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	113	615	0	ENST00000241453.7:c.884G>A	p.Gly295Asp	p.G295D	ENST00000241453	NM_004119.2	295	gGc/gAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004984	16004984	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141130092		P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	205	718	3	ENST00000268712.3:c.2270C>T	p.Thr757Met	p.T757M	ENST00000268712	NM_006311.3	757	aCg/aTg																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752480	55752480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	175	786	5	ENST00000284073.2:c.938G>A	p.Gly313Asp	p.G313D	ENST00000284073	NM_138962.2	313	gGc/gAc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740836	58740836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	70	503	0	ENST00000305921.3:c.1741C>T	p.Arg581Ter	p.R581*	ENST00000305921	NM_003620.3	581	Cga/Tga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350527	15350527	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	95	682	0	ENST00000263377.2:c.3388C>G	p.Arg1130Gly	p.R1130G	ENST00000263377	NM_058243.2	1130	Cgg/Ggg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943385	17943385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	112	781	1	ENST00000458235.1:c.2623C>T	p.Leu875Phe	p.L875F	ENST00000458235	NM_000215.3	875	Ctc/Ttc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753369	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	84	860	1	ENST00000222329.4:c.895_896delinsAA	p.Gly299Lys	p.G299K	ENST00000222329	NM_006494.2	299	GGa/AAa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845256	42845256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	65	510	0	ENST00000398585.3:c.1006G>A	p.Glu336Lys	p.E336K	ENST00000398585	NM_001135099.1	336	Gaa/Aaa																																																																														
CDK6	1021	MSKCC	GRCh37	7	92462588	92462589	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0023378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	314	498	1	ENST00000265734.4:c.49_50delinsAA	p.Ala17Lys	p.A17K	ENST00000265734	NM_001259.6	17	GCg/AAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	108	549	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	37	429	0				ENST00000310581	NM_198253.2																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81819752	81819753	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0023733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	60	560	1	ENST00000359376.3:c.158_159delinsTT	p.Ala53Val	p.A53V	ENST00000359376	NM_002661.3	53	gCC/gTT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718264	117718264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	83	469	0	ENST00000368508.3:c.593C>T	p.Pro198Leu	p.P198L	ENST00000368508	NM_002944.2	198	cCt/cTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	2407	504	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0023734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	59	521	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	35	520	2	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577106	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	311	757	0	ENST00000269305.4:c.832_833delCCinsTT	p.Pro278Phe	p.P278F	ENST00000269305	NM_001126112.2	278	CCt/TTt																																																																														
ATM	472	MSKCC	GRCh37	11	108178712	108178712	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0023734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	74	388	1	ENST00000278616.4:c.5762+1G>A		p.X1921_splice	ENST00000278616	NM_000051.3	1921																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431903	49431903	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	147	800	0	ENST00000301067.7:c.9236A>C	p.Lys3079Thr	p.K3079T	ENST00000301067	NM_003482.3	3079	aAg/aCg																																																																														
CD79A	973	MSKCC	GRCh37	19	42384776	42384776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	151	597	0	ENST00000221972.3:c.538G>A	p.Asp180Asn	p.D180N	ENST00000221972	NM_021601.3	180	Gat/Aat																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801109	1801109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	180	788	0	ENST00000260795.2:c.238G>A	p.Gly80Arg	p.G80R	ENST00000260795		80	Ggg/Agg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974723	21974723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	151	425	0	ENST00000304494.5:c.104G>A	p.Gly35Glu	p.G35E	ENST00000304494	NM_000077.4	35	gGg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974723	21974723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	151	425	0	ENST00000304494.5:c.104G>A	p.Gly35Glu	p.G35E	ENST00000304494	NM_000077.4	35	gGg/gAg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	32	313	0	ENST00000288135.5:c.1669T>G	p.Trp557Gly	p.W557G	ENST00000288135	NM_000222.2	557	Tgg/Ggg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858517	9858517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	46	375	1	ENST00000330684.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000330684	NM_001134407.1	962	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	57	246	0	ENST00000358273.4:c.6852_6855delTTAC	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645693	12645693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	29	204	0	ENST00000251849.4:c.776C>T	p.Ser259Phe	p.S259F	ENST00000251849	NM_002880.3	259	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	63	390	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	63	390	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641144	117641144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	58	413	2	ENST00000368508.3:c.5827G>A	p.Glu1943Lys	p.E1943K	ENST00000368508	NM_002944.2	1943	Gaa/Aaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678460	88678460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	63	414	0	ENST00000360948.2:c.1076C>T	p.Ser359Phe	p.S359F	ENST00000360948	NM_001012338.2	359	tCc/tTc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	42	331	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	41	267	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	32	285	1	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245411	153245411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	65	416	0	ENST00000281708.4:c.1780C>T	p.Leu594Phe	p.L594F	ENST00000281708	NM_033632.3	594	Ctt/Ttt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211055	55211055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	41	368	0	ENST00000275493.2:c.298C>T	p.Pro100Ser	p.P100S	ENST00000275493	NM_005228.3	100	Cct/Tct																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912191	114912191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	64	400	0	ENST00000543371.1:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000543371	NM_001198531.1	421	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	63	390	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
HGF	3082	MSKCC	GRCh37	7	81386512	81386512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	45	230	0	ENST00000222390.5:c.475G>A	p.Glu159Lys	p.E159K	ENST00000222390	NM_000601.4	159	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982021	93982021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	26	215	0	ENST00000369303.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000369303	NM_004440.3	482	Gag/Aag																																																																														
ALK	238	MSKCC	GRCh37	2	29519886	29519886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	74	374	0	ENST00000389048.3:c.1685G>A	p.Gly562Glu	p.G562E	ENST00000389048	NM_004304.4	562	gGa/gAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733337	40733337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	60	300	0	ENST00000373198.4:c.3469G>A	p.Asp1157Asn	p.D1157N	ENST00000373198	NM_133170.3	1157	Gat/Aat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779181	135779181	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202241429		P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	71	324	0	ENST00000298552.3:c.2065C>T	p.Arg689Cys	p.R689C	ENST00000298552	NM_001162426.1	689	Cgc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248617	212248617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	37	385	0	ENST00000342788.4:c.3650G>A	p.Gly1217Glu	p.G1217E	ENST00000342788	NM_005235.2	1217	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112128185	112128185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	39	302	0	ENST00000257430.4:c.688C>T	p.Arg230Cys	p.R230C	ENST00000257430	NM_000038.5	230	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187558040	187558040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	15	188	1	ENST00000441802.2:c.3671C>T	p.Pro1224Leu	p.P1224L	ENST00000441802	NM_005245.3	1224	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715333	117715333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	25	256	0	ENST00000368508.3:c.1156G>A	p.Asp386Asn	p.D386N	ENST00000368508	NM_002944.2	386	Gat/Aat																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651124	206651124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	67	512	1	ENST00000367120.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000367120	NM_014002.3	245	gCc/gTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100959	41100959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	46	375	0	ENST00000373198.4:c.1397A>G	p.Asn466Ser	p.N466S	ENST00000373198	NM_133170.3	466	aAc/aGc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418373	139418373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	77	502	0	ENST00000277541.6:c.199C>T	p.Pro67Ser	p.P67S	ENST00000277541	NM_017617.3	67	Ccc/Tcc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383230	42383230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	53	383	1	ENST00000221972.3:c.250G>A	p.Gly84Ser	p.G84S	ENST00000221972	NM_021601.3	84	Ggc/Agc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790129	40790129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	46	426	0	ENST00000373198.4:c.2602C>T	p.Pro868Ser	p.P868S	ENST00000373198	NM_133170.3	868	Ccc/Tcc																																																																														
SRC	6714	MSKCC	GRCh37	20	36031230	36031230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	73	458	0	ENST00000358208.4:c.1349C>T	p.Ser450Phe	p.S450F	ENST00000358208		450	tCc/tTc																																																																														
ERF	2077	MSKCC	GRCh37	19	42752817	42752817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	57	486	1	ENST00000222329.4:c.1447C>T	p.Arg483Cys	p.R483C	ENST00000222329	NM_006494.2	483	Cgc/Tgc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243777028	243777028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	49	336	0	ENST00000263826.5:c.641C>T	p.Ser214Phe	p.S214F	ENST00000263826	NM_005465.4	214	tCc/tTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864355	57864355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	43	447	0	ENST00000228682.2:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000228682	NM_005269.2	611	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444082	49444082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	54	402	0	ENST00000301067.7:c.3289C>T	p.Pro1097Ser	p.P1097S	ENST00000301067	NM_003482.3	1097	Cca/Tca																																																																														
CBL	867	MSKCC	GRCh37	11	119149260	119149260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	65	389	0	ENST00000264033.4:c.1268T>C	p.Ile423Thr	p.I423T	ENST00000264033	NM_005188.3	423	aTt/aCt																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119562156	119562156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	93	295	0	ENST00000316626.5:c.1180C>T	p.His394Tyr	p.H394Y	ENST00000316626		394	Cat/Tat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106808	27106808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	66	406	0	ENST00000324856.7:c.6419C>T	p.Pro2140Leu	p.P2140L	ENST00000324856	NM_006015.4	2140	cCc/cTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11288735	11288735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	61	351	0	ENST00000361445.4:c.3020C>T	p.Ala1007Val	p.A1007V	ENST00000361445	NM_004958.3	1007	gCc/gTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258601	16258607	+	frameshift_variant	Frame_Shift_Del	DEL	ACACGCC	ACACGCC	CT			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	43	326	2	ENST00000375759.3:c.5866_5872delinsCT	p.Thr1956LeufsTer5	p.T1956Lfs*5	ENST00000375759	NM_015001.2	1956	ACACGCCgg/CTgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261949	16261949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	41	370	0	ENST00000375759.3:c.9214C>T	p.His3072Tyr	p.H3072Y	ENST00000375759	NM_015001.2	3072	Cac/Tac																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46532699	46532699	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	30	277	0	ENST00000262741.5:c.379C>G	p.Pro127Ala	p.P127A	ENST00000262741	NM_003629.3	127	Cct/Gct																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46726621	46726621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	42	369	0	ENST00000371975.4:c.700C>T	p.Leu234Phe	p.L234F	ENST00000371975	NM_003579.3	234	Ctc/Ttc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115282358	115282359	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	49	362	2	ENST00000438362.2:c.291_292delinsTT	p.His98Tyr	p.H98Y	ENST00000438362	NM_001242891.1	97	ttCCac/ttTTac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468189	120468189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	58	434	0	ENST00000256646.2:c.4250C>T	p.Pro1417Leu	p.P1417L	ENST00000256646	NM_024408.3	1417	cCc/cTc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844416	156844416	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	73	510	1	ENST00000524377.1:c.1249G>A	p.Gly417Arg	p.G417R	ENST00000524377	NM_002529.3	417	Ggg/Agg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332178	70332178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	33	231	0	ENST00000373644.4:c.83G>A	p.Arg28Gln	p.R28Q	ENST00000373644	NM_030625.2	28	cGa/cAa																																																																														
TET1	80312	MSKCC	GRCh37	10	70446317	70446317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	66	374	0	ENST00000373644.4:c.5257C>T	p.Arg1753Cys	p.R1753C	ENST00000373644	NM_030625.2	1753	Cgt/Tgt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88677078	88677078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	52	356	0	ENST00000372037.3:c.863T>C	p.Ile288Thr	p.I288T	ENST00000372037	NM_004329.2	288	aTa/aCa																																																																														
WT1	7490	MSKCC	GRCh37	11	32456585	32456585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	24	58	0	ENST00000332351.3:c.307G>A	p.Ala103Thr	p.A103T	ENST00000332351	NM_024426.4	103	Gcg/Acg																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588130	69588130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	73	424	0	ENST00000168712.1:c.568G>A	p.Gly190Arg	p.G190R	ENST00000168712	NM_002007.2	190	Ggg/Agg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77043864	77043864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	73	452	0	ENST00000356341.3:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000356341	NM_002576.4	488	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342451	118342451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	35	215	0	ENST00000534358.1:c.577C>T	p.Pro193Ser	p.P193S	ENST00000534358	NM_005933.3	193	Cca/Tca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342545	118342545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	14	206	0	ENST00000534358.1:c.671G>A	p.Arg224Lys	p.R224K	ENST00000534358	NM_005933.3	224	aGa/aAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343913	118343913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	49	291	0	ENST00000534358.1:c.2039C>T	p.Ser680Leu	p.S680L	ENST00000534358	NM_005933.3	680	tCg/tTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343994	118343997	+	frameshift_variant	Frame_Shift_Del	DEL	CTCA	CTCA	-			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	24	275	0	ENST00000534358.1:c.2123_2126del	p.His708LeufsTer7	p.H708Lfs*7	ENST00000534358	NM_005933.3	707	gCTCAc/gc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118355589	118355589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	51	385	0	ENST00000534358.1:c.4231G>A	p.Ala1411Thr	p.A1411T	ENST00000534358	NM_005933.3	1411	Gca/Aca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552648	18552648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	62	425	0	ENST00000266497.5:c.2059G>A	p.Glu687Lys	p.E687K	ENST00000266497		687	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18699356	18699356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	30	232	0	ENST00000266497.5:c.3457C>T	p.His1153Tyr	p.H1153Y	ENST00000266497		1153	Cat/Tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432348	49432348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	73	423	1	ENST00000301067.7:c.8791C>T	p.Pro2931Ser	p.P2931S	ENST00000301067	NM_003482.3	2931	Cca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446167	49446168	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	87	421	1	ENST00000301067.7:c.1298_1299delinsTT	p.Pro433Leu	p.P433L	ENST00000301067	NM_003482.3	433	cCC/cTT																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495826	56495826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	27	247	0	ENST00000267101.3:c.4016C>T	p.Ala1339Val	p.A1339V	ENST00000267101	NM_001982.3	1339	gCc/gTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623794	28623794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	57	384	0	ENST00000241453.7:c.860T>C	p.Leu287Ser	p.L287S	ENST00000241453	NM_004119.2	287	tTa/tCa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29007982	29007982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	43	258	0	ENST00000282397.4:c.787C>T	p.Gln263Ter	p.Q263*	ENST00000282397	NM_002019.4	263	Caa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972704	32972704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	74	333	0	ENST00000380152.3:c.10054C>G	p.Leu3352Val	p.L3352V	ENST00000380152		3352	Ctt/Gtt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562489	95562489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	41	332	0	ENST00000343455.3:c.4768G>A	p.Val1590Met	p.V1590M	ENST00000343455	NM_177438.2	1590	Gtg/Atg																																																																														
MGA	23269	MSKCC	GRCh37	15	42019419	42019419	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	71	390	0	ENST00000219905.7:c.3472C>A	p.Pro1158Thr	p.P1158T	ENST00000219905	NM_001164273.1	1158	Cca/Aca																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714168	43714168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	70	495	0	ENST00000382044.4:c.3985A>G	p.Met1329Val	p.M1329V	ENST00000382044	NM_001141980.1	1329	Atg/Gtg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726697	88726697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	43	311	0	ENST00000360948.2:c.347G>A	p.Arg116Gln	p.R116Q	ENST00000360948	NM_001012338.2	116	cGg/cAg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396427	396427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	48	553	0	ENST00000262320.3:c.599C>T	p.Ser200Phe	p.S200F	ENST00000262320	NM_003502.3	200	tCc/tTc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396436	396436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	49	553	0	ENST00000262320.3:c.590C>T	p.Thr197Ile	p.T197I	ENST00000262320	NM_003502.3	197	aCc/aTc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222206	2222206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	67	374	0	ENST00000326181.6:c.490G>A	p.Asp164Asn	p.D164N	ENST00000326181	NM_032271.2	164	Gac/Aac																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2224258	2224258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	63	466	0	ENST00000326181.6:c.1270G>A	p.Asp424Asn	p.D424N	ENST00000326181	NM_032271.2	424	Gac/Aac																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225402	2225402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	65	450	0	ENST00000326181.6:c.1487C>T	p.Ser496Phe	p.S496F	ENST00000326181	NM_032271.2	496	tCc/tTc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50816367	50816368	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	25	282	0	ENST00000398568.2:c.1807_1808delinsTT	p.Thr603Phe	p.T603F	ENST00000398568	NM_001042412.1	603	ACc/TTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72863710	72863710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	88	448	1	ENST00000268489.5:c.3497C>T	p.Pro1166Leu	p.P1166L	ENST00000268489	NM_006885.3	1166	cCa/cTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993732	72993732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	44	321	0	ENST00000268489.5:c.313C>T	p.Pro105Ser	p.P105S	ENST00000268489	NM_006885.3	105	Ccg/Tcg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877440	89877440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	67	388	1	ENST00000389301.3:c.323C>T	p.Pro108Leu	p.P108L	ENST00000389301	NM_000135.2	108	cCc/cTc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979512	7979512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	47	380	1	ENST00000319144.4:c.1513G>A	p.Val505Met	p.V505M	ENST00000319144	NM_001139.2	505	Gtg/Atg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12043169	12043169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	45	202	0	ENST00000353533.5:c.1054G>A	p.Glu352Lys	p.E352K	ENST00000353533	NM_003010.3	352	Gaa/Aaa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30302513	30302513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	23	89	0	ENST00000322652.5:c.604C>T	p.Pro202Ser	p.P202S	ENST00000322652	NM_015355.2	202	Cca/Tca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881303	37881303	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	36	446	0	ENST00000269571.5:c.2495G>A	p.Gly832Glu	p.G832E	ENST00000269571		832	gGg/gAg																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752378	55752378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	93	515	0	ENST00000284073.2:c.836C>T	p.Pro279Leu	p.P279L	ENST00000284073	NM_138962.2	279	cCa/cTa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56390406	56390406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	43	269	1	ENST00000348428.3:c.1145C>T	p.Ser382Leu	p.S382L	ENST00000348428	NM_006785.3	382	tCa/tTa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226260	2226261	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	59	450	3	ENST00000398665.3:c.3740_3741delinsTT	p.Pro1247Leu	p.P1247L	ENST00000398665	NM_032482.2	1247	cCC/cTT																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226995	2226996	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	55	379	3	ENST00000398665.3:c.4475_4476delinsTT	p.Ser1492Phe	p.S1492F	ENST00000398665	NM_032482.2	1492	tCC/tTT																																																																														
CARM1	10498	MSKCC	GRCh37	19	11018777	11018777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	96	512	1	ENST00000327064.4:c.409T>C	p.Phe137Leu	p.F137L	ENST00000327064	NM_199141.1	137	Ttc/Ctc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271781	15271781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	57	473	0	ENST00000263388.2:c.6658G>A	p.Glu2220Lys	p.E2220K	ENST00000263388	NM_000435.2	2220	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272152	15272152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	53	417	0	ENST00000263388.2:c.6287C>T	p.Ser2096Leu	p.S2096L	ENST00000263388	NM_000435.2	2096	tCg/tTg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350596	15350596	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200882606		P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	63	501	0	ENST00000263377.2:c.3319C>T	p.Leu1107Phe	p.L1107F	ENST00000263377	NM_058243.2	1107	Ctc/Ttc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355040	15355040	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	74	510	0	ENST00000263377.2:c.2581+2T>G		p.X861_splice	ENST00000263377	NM_058243.2	861																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223001	36223001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	65	482	0	ENST00000222270.7:c.5630T>C	p.Leu1877Ser	p.L1877S	ENST00000222270	NM_014727.1	1877	tTg/tCg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906325	50906325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	42	430	0	ENST00000440232.2:c.986C>T	p.Pro329Leu	p.P329L	ENST00000440232	NM_002691.3	329	cCt/cTt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224158	39224158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	38	299	0	ENST00000402219.2:c.2986C>T	p.Pro996Ser	p.P996S	ENST00000402219	NM_005633.3	996	Ccg/Tcg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698196	47698196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	39	220	0	ENST00000233146.2:c.1754C>T	p.Ser585Phe	p.S585F	ENST00000233146	NM_000251.2	585	tCt/tTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543814	212543814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	75	321	0	ENST00000342788.4:c.1585G>A	p.Gly529Arg	p.G529R	ENST00000342788	NM_005235.2	529	Gga/Aga																																																																														
PAK7	0	MSKCC	GRCh37	20	9560854	9560854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	80	372	0	ENST00000353224.5:c.928G>A	p.Gly310Arg	p.G310R	ENST00000353224	NM_177990.2	310	Gga/Aga																																																																														
PAK7	0	MSKCC	GRCh37	20	9561247	9561248	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	45	382	0	ENST00000353224.5:c.534_535delinsAA	p.Glu179Lys	p.E179K	ENST00000353224	NM_177990.2	178	ggGGag/ggAAag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710526	40710526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	50	383	0	ENST00000373198.4:c.4325C>T	p.Thr1442Ile	p.T1442I	ENST00000373198	NM_133170.3	1442	aCc/aTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733238	40733238	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	43	399	0	ENST00000373198.4:c.3568A>T	p.Asn1190Tyr	p.N1190Y	ENST00000373198	NM_133170.3	1190	Aac/Tac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743953	40743954	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CA	CA	TT			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	44	317	1	ENST00000373198.4:c.3041_3042delinsAA	p.Val1014Glu	p.V1014E	ENST00000373198	NM_133170.3	1014	gTG/gAA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790066	40790066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	86	396	1	ENST00000373198.4:c.2665C>T	p.Arg889Trp	p.R889W	ENST00000373198	NM_133170.3	889	Cgg/Tgg																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961435	54961435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	43	156	0	ENST00000312783.6:c.197C>T	p.Ser66Phe	p.S66F	ENST00000312783	NM_198436.1	66	tCc/tTc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164637	36164637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	80	432	0	ENST00000300305.3:c.1238C>T	p.Ser413Phe	p.S413F	ENST00000300305		413	tCc/tTc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36421166	36421166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	38	283	1	ENST00000300305.3:c.31C>T	p.Pro11Ser	p.P11S	ENST00000300305		11	Cct/Tct																																																																														
NF2	4771	MSKCC	GRCh37	22	30038261	30038261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	52	356	0	ENST00000338641.4:c.434C>T	p.Ala145Val	p.A145V	ENST00000338641	NM_000268.3	145	gCc/gTc																																																																														
RAC2	5880	MSKCC	GRCh37	22	37627989	37627989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	103	407	1	ENST00000249071.6:c.271G>A	p.Glu91Lys	p.E91K	ENST00000249071	NM_002872.4	91	Gag/Aag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47088087	47088087	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	71	313	0	ENST00000409792.3:c.6988T>G	p.Tyr2330Asp	p.Y2330D	ENST00000409792	NM_014159.6	2330	Tat/Gat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165819	47165819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	45	323	1	ENST00000409792.3:c.307C>T	p.Pro103Ser	p.P103S	ENST00000409792	NM_014159.6	103	Cct/Tct																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259104	89259104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	30	247	0	ENST00000336596.2:c.248G>A	p.Arg83Lys	p.R83K	ENST00000336596	NM_005233.5	83	aGa/aAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189608612	189608612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	134	441	0	ENST00000264731.3:c.1687G>A	p.Asp563Asn	p.D563N	ENST00000264731	NM_003722.4	563	Gac/Aac																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749368	41749369	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	GG	GG	AA			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	28	255	0	ENST00000226382.2:c.426_427delinsTT	p.Gln143Ter	p.Q143*	ENST00000226382	NM_003924.3	142	gtCCag/gtTTag																																																																														
KIT	3815	MSKCC	GRCh37	4	55604668	55604668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	72	375	0	ENST00000288135.5:c.2876C>T	p.Ser959Phe	p.S959F	ENST00000288135	NM_000222.2	959	tCt/tTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189846	66189846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	31	316	0	ENST00000273854.3:c.3100A>G	p.Met1034Val	p.M1034V	ENST00000273854	NM_004439.5	1034	Atg/Gtg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280008	66280008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	29	152	0	ENST00000273854.3:c.1681C>T	p.Pro561Ser	p.P561S	ENST00000273854	NM_004439.5	561	Cca/Tca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521067	187521067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	36	265	0	ENST00000441802.2:c.12088C>T	p.Pro4030Ser	p.P4030S	ENST00000441802	NM_005245.3	4030	Ccg/Tcg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539513	187539513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	40	311	0	ENST00000441802.2:c.8227C>T	p.Pro2743Ser	p.P2743S	ENST00000441802	NM_005245.3	2743	Cca/Tca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539696	187539696	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	28	277	0	ENST00000441802.2:c.8044T>A	p.Ser2682Thr	p.S2682T	ENST00000441802	NM_005245.3	2682	Tca/Aca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945793	38945793	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	34	203	0	ENST00000357387.3:c.4433A>T	p.Asn1478Ile	p.N1478I	ENST00000357387	NM_152756.3	1478	aAt/aTt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950783	38950783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	15	193	0	ENST00000357387.3:c.3167C>T	p.Ser1056Phe	p.S1056F	ENST00000357387	NM_152756.3	1056	tCt/tTt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564674	86564674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	60	476	0	ENST00000274376.6:c.406C>T	p.Pro136Ser	p.P136S	ENST00000274376	NM_002890.2	136	Cct/Tct																																																																														
NPM1	4869	MSKCC	GRCh37	5	170818325	170818325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	55	335	0	ENST00000296930.5:c.155G>A	p.Gly52Asp	p.G52D	ENST00000296930	NM_002520.6	52	gGt/gAt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671005	30671005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	71	474	1	ENST00000376406.3:c.5741G>A	p.Gly1914Glu	p.G1914E	ENST00000376406	NM_014641.2	1914	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120407	94120407	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	27	221	0	ENST00000369303.4:c.644T>C	p.Phe215Ser	p.F215S	ENST00000369303	NM_004440.3	215	tTt/tCt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631325	117631325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	37	322	0	ENST00000368508.3:c.6353G>A	p.Arg2118Lys	p.R2118K	ENST00000368508	NM_002944.2	2118	aGa/aAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117700301	117700301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	21	327	0	ENST00000368508.3:c.2518C>T	p.Leu840Phe	p.L840F	ENST00000368508	NM_002944.2	840	Ctc/Ttc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710717	117710717	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	40	266	0	ENST00000368508.3:c.1555C>T	p.Gln519Ter	p.Q519*	ENST00000368508	NM_002944.2	519	Caa/Taa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157454236	157454236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	42	354	0	ENST00000346085.5:c.2446C>T	p.Pro816Ser	p.P816S	ENST00000346085	NM_020732.3	816	Cct/Tct																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984154	2984154	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	56	266	0	ENST00000396946.4:c.376G>C	p.Gly126Arg	p.G126R	ENST00000396946	NM_032415.4	126	Ggc/Cgc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444362	50444362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	80	260	1	ENST00000331340.3:c.292G>A	p.Asp98Asn	p.D98N	ENST00000331340	NM_006060.4	98	Gac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55225380	55225380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	95	363	0	ENST00000275493.2:c.1232C>T	p.Pro411Leu	p.P411L	ENST00000275493	NM_005228.3	411	cCt/cTt																																																																														
HGF	3082	MSKCC	GRCh37	7	81335712	81335712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	46	233	0	ENST00000222390.5:c.1648A>G	p.Ile550Val	p.I550V	ENST00000222390	NM_000601.4	550	Att/Gtt																																																																														
HGF	3082	MSKCC	GRCh37	7	81381506	81381507	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	72	255	1	ENST00000222390.5:c.554_555delinsAA	p.Gly185Glu	p.G185E	ENST00000222390	NM_000601.4	185	gGG/gAA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523482	106523482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	49	162	0	ENST00000359195.3:c.2634G>A	p.Met878Ile	p.M878I	ENST00000359195	NM_002649.2	878	atG/atA																																																																														
SMO	6608	MSKCC	GRCh37	7	128850885	128850885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61740964		P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	87	448	0	ENST00000249373.3:c.1732G>A	p.Glu578Lys	p.E578K	ENST00000249373	NM_005631.4	578	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874926	151874926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	71	283	0	ENST00000262189.6:c.7612C>T	p.Pro2538Ser	p.P2538S	ENST00000262189	NM_170606.2	2538	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931880	68931880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	60	427	0	ENST00000288368.4:c.310G>A	p.Glu104Lys	p.E104K	ENST00000288368	NM_024870.2	104	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965479	68965479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	58	446	0	ENST00000288368.4:c.1091A>C	p.Lys364Thr	p.K364T	ENST00000288368	NM_024870.2	364	aAa/aCa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002901	69002901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	38	294	0	ENST00000288368.4:c.2201G>A	p.Ser734Asn	p.S734N	ENST00000288368	NM_024870.2	734	aGt/aAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341880	8341880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	46	402	0	ENST00000356435.5:c.4760T>C	p.Leu1587Ser	p.L1587S	ENST00000356435		1587	tTa/tCa																																																																														
TEK	7010	MSKCC	GRCh37	9	27183486	27183486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	35	311	0	ENST00000380036.4:c.1060G>A	p.Asp354Asn	p.D354N	ENST00000380036	NM_000459.3	354	Gat/Aat																																																																														
SYK	6850	MSKCC	GRCh37	9	93627369	93627369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	43	385	0	ENST00000375746.1:c.836C>T	p.Ser279Phe	p.S279F	ENST00000375746	NM_001174167.1	279	tCc/tTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209694	98209694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	97	499	0	ENST00000331920.6:c.3844C>T	p.Pro1282Ser	p.P1282S	ENST00000331920	NM_000264.3	1282	Ccg/Tcg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47035930	47035930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	75	227	0	ENST00000329236.7:c.377C>T	p.Ser126Leu	p.S126L	ENST00000329236	NM_001204466.1	126	tCg/tTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041409	47041409	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	65	269	0	ENST00000329236.7:c.1519C>T	p.Gln507Ter	p.Q507*	ENST00000329236	NM_001204466.1	507	Cag/Tag																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652416	48652416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	57	242	0	ENST00000376670.3:c.1087C>T	p.Leu363Phe	p.L363F	ENST00000376670	NM_002049.3	363	Ctc/Ttc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410310	63410310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	48	242	0	ENST00000330258.3:c.2857C>T	p.Pro953Ser	p.P953S	ENST00000330258	NM_152424.3	953	Cca/Tca																																																																														
AR	367	MSKCC	GRCh37	X	66943649	66943649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	65	233	0	ENST00000374690.3:c.2729G>A	p.Gly910Glu	p.G910E	ENST00000374690	NM_000044.3	910	gGg/gAg																																																																														
RAD52	5893	MSKCC	GRCh37	12	1022604	1022604	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	49	397	0	ENST00000358495.3:c.1210del	p.His404IlefsTer7	p.H404Ifs*7	ENST00000358495	NM_134424.2	404	Cat/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	358	386	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	2414	356	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	142	246	1				ENST00000310581	NM_198253.2																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81969933	81969933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	192	395	0	ENST00000359376.3:c.3002G>A	p.Arg1001His	p.R1001H	ENST00000359376	NM_002661.3	1001	cGc/cAc																																																																														
SMO	6608	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	11	47	0	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																														
TERT	7015	MSKCC	GRCh37	5	1293431	1293431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	186	350	0	ENST00000310581.5:c.1570C>T	p.Pro524Ser	p.P524S	ENST00000310581	NM_198253.2	524	Cca/Tca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	148	456	2	ENST00000324856.7:c.2291C>T	p.Ser764Phe	p.S764F	ENST00000324856	NM_006015.4	764	tCc/tTc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874636	35874636	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	154	279	0	ENST00000303115.3:c.792G>A	p.Trp264Ter	p.W264*	ENST00000303115	NM_002185.3	264	tgG/tgA																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873223	136873223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	75	239	0	ENST00000241393.3:c.275C>T	p.Pro92Leu	p.P92L	ENST00000241393	NM_003467.2	92	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724308	117724308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	171	310	0	ENST00000368508.3:c.571C>T	p.His191Tyr	p.H191Y	ENST00000368508	NM_002944.2	191	Cat/Tat																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139802565	139802565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	264	477	1	ENST00000247668.2:c.410C>T	p.Pro137Leu	p.P137L	ENST00000247668	NM_021138.3	137	cCc/cTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561325	9561325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	112	338	0	ENST00000353224.5:c.457G>A	p.Gly153Arg	p.G153R	ENST00000353224	NM_177990.2	153	Gga/Aga																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38632044	38632044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	207	364	0	ENST00000299084.4:c.530C>T	p.Pro177Leu	p.P177L	ENST00000299084	NM_152594.2	177	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295204	1295204	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs2735943		P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	140	214	0				ENST00000310581	NM_198253.2																																																																																
TBX3	6926	MSKCC	GRCh37	12	115109927	115109927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	108	415	1	ENST00000257566.3:c.1951G>A	p.Asp651Asn	p.D651N	ENST00000257566	NM_016569.3	651	Gac/Aac																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918843	50918843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	222	381	0	ENST00000440232.2:c.2713G>A	p.Glu905Lys	p.E905K	ENST00000440232	NM_002691.3	905	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29490396	29490396	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	269	284	0	ENST00000358273.4:c.479+2T>C		p.X160_splice	ENST00000358273	NM_001042492.2	160																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43762085	43762085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	236	342	0	ENST00000382044.4:c.1360C>T	p.Pro454Ser	p.P454S	ENST00000382044	NM_001141980.1	454	Cct/Tct																																																																														
FLT4	2324	MSKCC	GRCh37	5	180055937	180055937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	210	413	1	ENST00000261937.6:c.1048G>A	p.Glu350Lys	p.E350K	ENST00000261937	NM_182925.4	350	Gag/Aag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11186697	11186698	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	189	388	0	ENST00000361445.4:c.6507_6508delinsTT	p.Arg2170Trp	p.R2170W	ENST00000361445	NM_004958.3	2169	ccCCgg/ccTTgg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845329	156845329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	217	454	0	ENST00000524377.1:c.1372C>T	p.Pro458Ser	p.P458S	ENST00000524377	NM_002529.3	458	Cca/Tca																																																																														
TET1	80312	MSKCC	GRCh37	10	70333593	70333605	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAAGCAGGTTC	GAGAAGCAGGTTC	-			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	169	345	0	ENST00000373644.4:c.1498_1510del	p.Glu500IlefsTer2	p.E500Ifs*2	ENST00000373644	NM_030625.2	500	GAGAAGCAGGTTCat/at																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903681	114903681	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	212	364	0	ENST00000543371.1:c.686-1G>A		p.X229_splice	ENST00000543371	NM_001198531.1	229																																																																															
WT1	7490	MSKCC	GRCh37	11	32413602	32413602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	182	353	0	ENST00000332351.3:c.1348C>T	p.Pro450Ser	p.P450S	ENST00000332351	NM_024426.4	450	Cca/Tca																																																																														
BIRC3	330	MSKCC	GRCh37	11	102207671	102207671	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	139	228	0	ENST00000263464.3:c.1653del	p.Gln552LysfsTer16	p.Q552Kfs*16	ENST00000263464	NM_001165.4	551	ctA/ct																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944821	31944821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	135	412	0	ENST00000340398.3:c.280G>A	p.Glu94Lys	p.E94K	ENST00000340398	NM_001013699.2	94	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495074	56495074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	114	420	0	ENST00000267101.3:c.3431C>T	p.Thr1144Ile	p.T1144I	ENST00000267101	NM_001982.3	1144	aCc/aTc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223799	2223799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	136	408	0	ENST00000326181.6:c.1097C>T	p.Ser366Phe	p.S366F	ENST00000326181	NM_032271.2	366	tCc/tTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633155	3633155	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184699331		P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	279	452	0	ENST00000294008.3:c.5096C>T	p.Ser1699Phe	p.S1699F	ENST00000294008	NM_032444.2	1699	tCt/tTt																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216083	7216083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	210	230	0	ENST00000380728.2:c.976C>T	p.His326Tyr	p.H326Y	ENST00000380728		326	Cac/Tac																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936733	78936733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	212	409	1	ENST00000306801.3:c.3815C>T	p.Ser1272Phe	p.S1272F	ENST00000306801	NM_020761.2	1272	tCc/tTc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3120990	3120990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	144	317	0	ENST00000078429.4:c.893C>T	p.Pro298Leu	p.P298L	ENST00000078429	NM_002067.2	298	cCc/cTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5245915	5245915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	261	489	1	ENST00000357368.4:c.860C>T	p.Pro287Leu	p.P287L	ENST00000357368	NM_002850.3	287	cCc/cTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291218	10291218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	99	338	0	ENST00000340748.4:c.253C>T	p.Leu85Phe	p.L85F	ENST00000340748		85	Ctt/Ttt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279655	18279655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	91	359	0	ENST00000222254.8:c.1928C>T	p.Thr643Ile	p.T643I	ENST00000222254	NM_005027.3	643	aCc/aTc																																																																														
ALK	238	MSKCC	GRCh37	2	29519916	29519916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	185	286	0	ENST00000389048.3:c.1655T>C	p.Met552Thr	p.M552T	ENST00000389048	NM_004304.4	552	aTg/aCg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281915	39281915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	216	307	1	ENST00000402219.2:c.560C>T	p.Ser187Phe	p.S187F	ENST00000402219	NM_005633.3	187	tCt/tTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285173	212285173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	139	272	0	ENST00000342788.4:c.3128C>T	p.Ser1043Leu	p.S1043L	ENST00000342788	NM_005235.2	1043	tCg/tTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9525080	9525080	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	101	417	0	ENST00000353224.5:c.1805C>G	p.Ser602Ter	p.S602*	ENST00000353224	NM_177990.2	602	tCa/tGa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713666	30713666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	170	320	0	ENST00000359013.4:c.1066G>A	p.Gly356Ser	p.G356S	ENST00000359013	NM_001024847.2	356	Ggc/Agc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067233	37067233	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	135	282	0	ENST00000231790.2:c.1144C>T	p.Gln382Ter	p.Q382*	ENST00000231790	NM_000249.3	382	Cag/Tag																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665109	138665110	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	80	245	1	ENST00000330315.3:c.455_456delinsTT	p.Pro152Leu	p.P152L	ENST00000330315	NM_023067.3	152	cCC/cTT																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260316	149260316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	134	443	1	ENST00000360632.3:c.577C>T	p.His193Tyr	p.H193Y	ENST00000360632	NM_015472.4	193	Cac/Tac																																																																														
KDR	3791	MSKCC	GRCh37	4	55961757	55961757	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	2803	313	0	ENST00000263923.4:c.2804T>G	p.Phe935Cys	p.F935C	ENST00000263923	NM_002253.2	935	tTt/tGt																																																																														
TET2	54790	MSKCC	GRCh37	4	106197107	106197107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	48	225	0	ENST00000380013.4:c.5440G>A	p.Gly1814Arg	p.G1814R	ENST00000380013	NM_001127208.2	1814	Gga/Aga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720929	176720929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	206	318	1	ENST00000439151.2:c.6560G>A	p.Arg2187Gln	p.R2187Q	ENST00000439151	NM_022455.4	2187	cGa/cAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469929	157469929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	196	387	0	ENST00000346085.5:c.2723C>T	p.Pro908Leu	p.P908L	ENST00000346085	NM_020732.3	908	cCa/cTa																																																																														
PARK2	0	MSKCC	GRCh37	6	162206941	162206941	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	56	186	0	ENST00000366898.1:c.735-1G>A		p.X245_splice	ENST00000366898	NM_004562.2	245																																																																															
PMS2	5395	MSKCC	GRCh37	7	6042178	6042178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	230	334	0	ENST00000265849.7:c.443C>T	p.Pro148Leu	p.P148L	ENST00000265849	NM_000535.5	148	cCc/cTc																																																																														
MET	4233	MSKCC	GRCh37	7	116435746	116435746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	151	321	0	ENST00000397752.3:c.3836G>A	p.Arg1279Lys	p.R1279K	ENST00000397752	NM_000245.2	1279	aGa/aAa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38172977	38172977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185827074		P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	290	467	1	ENST00000317025.8:c.2072C>T	p.Ser691Leu	p.S691L	ENST00000317025	NM_023034.1	691	tCg/tTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8338947	8338947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	217	374	0	ENST00000356435.5:c.5354G>A	p.Arg1785Lys	p.R1785K	ENST00000356435		1785	aGg/aAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471006	8471006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	99	324	0	ENST00000356435.5:c.3493G>A	p.Glu1165Lys	p.E1165K	ENST00000356435		1165	Gaa/Aaa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934346	39934346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	174	177	0	ENST00000378444.4:c.253C>T	p.Pro85Ser	p.P85S	ENST00000378444	NM_001123385.1	85	Ccg/Tcg																																																																														
BTK	695	MSKCC	GRCh37	X	100612562	100612562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	158	149	1	ENST00000308731.7:c.1112C>T	p.Ser371Phe	p.S371F	ENST00000308731	NM_000061.2	371	tCc/tTc																																																																														
PGR	5241	MSKCC	GRCh37	11	100996839	100996841	+	missense_variant	Missense_Mutation	ONP	GGT	GGT	AGA			P-0023777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	85	372	0	ENST00000325455.5:c.1686_1688delinsTCT	p.Leu562_Pro563delinsPheLeu	p.L562_P563delinsFL	ENST00000325455	NM_001202474.3	562	ttACCt/ttTCTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0023993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	84	693	0				ENST00000310581	NM_198253.2																																																																																
ARID2	196528	MSKCC	GRCh37	12	46240662	46240663	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0023993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	73	612	0	ENST00000334344.6:c.1523_1524dup	p.Val509MetfsTer8	p.V509Mfs*8	ENST00000334344	NM_152641.2	508	cat/cATat																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68352675	68352675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	102	694	0	ENST00000487270.1:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000487270	NM_133509.3	181	cGg/cAg																																																																														
B2M	567	MSKCC	GRCh37	15	45007688	45007688	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	89	614	0	ENST00000558401.1:c.135C>G	p.Cys45Trp	p.C45W	ENST00000558401	NM_004048.2	45	tgC/tgG																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911135	29911135	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	135	884	0	ENST00000376809.5:c.434A>C	p.Lys145Thr	p.K145T	ENST00000376809	NM_002116.7	145	aAg/aCg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057869	27057869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	357	1113	2	ENST00000324856.7:c.1577C>T	p.Pro526Leu	p.P526L	ENST00000324856	NM_006015.4	526	cCa/cTa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743790	46743790	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140793609		P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	666	1003	0	ENST00000371975.4:c.2080C>T	p.Pro694Ser	p.P694S	ENST00000371975	NM_003579.3	694	Cct/Tct																																																																														
ATM	472	MSKCC	GRCh37	11	108170612	108170612	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	85	590	1	ENST00000278616.4:c.5177G>A	p.Cys1726Tyr	p.C1726Y	ENST00000278616	NM_000051.3	1726	tGt/tAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343319	118343319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	100	584	2	ENST00000534358.1:c.1445C>T	p.Pro482Leu	p.P482L	ENST00000534358	NM_005933.3	482	cCc/cTc																																																																														
CBL	867	MSKCC	GRCh37	11	119170274	119170274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	76	521	0	ENST00000264033.4:c.2504G>A	p.Arg835Gln	p.R835Q	ENST00000264033	NM_005188.3	835	cGg/cAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658352	18658353	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	308	777	2	ENST00000266497.5:c.3157_3158delinsAA	p.Gly1053Lys	p.G1053K	ENST00000266497		1053	GGa/AAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120950	115120950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	413	661	3	ENST00000257566.3:c.56C>T	p.Pro19Leu	p.P19L	ENST00000257566	NM_016569.3	19	cCg/cTg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416785	121416785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	585	1044	1	ENST00000257555.6:c.214G>A	p.Asp72Asn	p.D72N	ENST00000257555		72	Gac/Aac																																																																														
RB1	5925	MSKCC	GRCh37	13	49039374	49039374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	138	1152	0	ENST00000267163.4:c.2359C>T	p.Arg787Ter	p.R787*	ENST00000267163	NM_000321.2	787	Cga/Tga																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99459909	99459909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	103	671	1	ENST00000268035.6:c.2005C>T	p.Pro669Ser	p.P669S	ENST00000268035	NM_000875.3	669	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862944	9862944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	489	758	1	ENST00000330684.3:c.2359G>A	p.Glu787Lys	p.E787K	ENST00000330684	NM_001134407.1	787	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	604	938	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29552143	29552144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	200	400	1	ENST00000358273.4:c.1882dup	p.Tyr628LeufsTer6	p.Y628Lfs*6	ENST00000358273	NM_001042492.2	626	ctt/cTtt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40359593	40359593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	582	990	1	ENST00000293328.3:c.2060C>T	p.Pro687Leu	p.P687L	ENST00000293328	NM_012448.3	687	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295806	15295806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	452	1227	0	ENST00000263388.2:c.2321C>T	p.Pro774Leu	p.P774L	ENST00000263388	NM_000435.2	774	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302789	15302789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	430	999	1	ENST00000263388.2:c.661G>A	p.Asp221Asn	p.D221N	ENST00000263388	NM_000435.2	221	Gac/Aac																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946006	17946007	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	116	994	2	ENST00000458235.1:c.1932_1933delinsTT	p.His645Tyr	p.H645Y	ENST00000458235	NM_000215.3	644	ccCCat/ccTTat																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965743	25965743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	278	1064	0	ENST00000435504.4:c.3463C>T	p.Pro1155Ser	p.P1155S	ENST00000435504		1155	Ccc/Tcc																																																																														
ALK	238	MSKCC	GRCh37	2	29445244	29445244	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145194836		P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	239	1051	1	ENST00000389048.3:c.3481G>A	p.Glu1161Lys	p.E1161K	ENST00000389048	NM_004304.4	1161	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	29519919	29519919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	206	644	0	ENST00000389048.3:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000389048	NM_004304.4	551	cGa/cAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561340	9561340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	531	838	0	ENST00000353224.5:c.442G>A	p.Glu148Lys	p.E148K	ENST00000353224	NM_177990.2	148	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713416	40713416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	261	991	1	ENST00000373198.4:c.4099C>T	p.Pro1367Ser	p.P1367S	ENST00000373198	NM_133170.3	1367	Ccc/Tcc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755662	39755662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	271	966	3	ENST00000288319.7:c.1103C>T	p.Ala368Val	p.A368V	ENST00000288319	NM_182918.3	368	gCc/gTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39795473	39795473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	106	859	0	ENST00000288319.7:c.247G>A	p.Asp83Asn	p.D83N	ENST00000288319	NM_182918.3	83	Gat/Aat																																																																														
EP300	2033	MSKCC	GRCh37	22	41574631	41574631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	818	1211	2	ENST00000263253.7:c.6916C>T	p.Gln2306Ter	p.Q2306*	ENST00000263253	NM_001429.3	2306	Caa/Taa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927934	49927934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	450	914	3	ENST00000296474.3:c.3794C>T	p.Thr1265Ile	p.T1265I	ENST00000296474	NM_002447.2	1265	aCc/aTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189526122	189526122	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193287780		P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	281	949	0	ENST00000264731.3:c.386C>T	p.Ser129Leu	p.S129L	ENST00000264731	NM_003722.4	129	tCg/tTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189604263	189604263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	539	947	0	ENST00000264731.3:c.1430C>T	p.Ser477Phe	p.S477F	ENST00000264731	NM_003722.4	477	tCt/tTt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801073	1801073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	243	1047	0	ENST00000260795.2:c.202C>T	p.Pro68Ser	p.P68S	ENST00000260795		68	Ccc/Tcc																																																																														
FAM175A	0	MSKCC	GRCh37	4	84390291	84390292	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	213	757	0	ENST00000321945.7:c.489_490delinsAA	p.Val164Ile	p.V164I	ENST00000321945	NM_139076.2	163	agGGta/agAAta																																																																														
TET2	54790	MSKCC	GRCh37	4	106196361	106196362	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	209	614	2	ENST00000380013.4:c.4694_4695delinsAT	p.Ser1565Tyr	p.S1565Y	ENST00000380013	NM_001127208.2	1565	tCC/tAT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524147	187524147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	264	761	0	ENST00000441802.2:c.11392C>T	p.Pro3798Ser	p.P3798S	ENST00000441802	NM_005245.3	3798	Ccg/Tcg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557744	187557744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	174	537	0	ENST00000441802.2:c.3967C>T	p.Leu1323Phe	p.L1323F	ENST00000441802	NM_005245.3	1323	Ctt/Ttt																																																																														
TERT	7015	MSKCC	GRCh37	5	1279569	1279570	+	missense_variant	Missense_Mutation	DNP	GA	GA	AC			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	202	1074	3	ENST00000310581.5:c.1966_1967delinsGT	p.Ser656Val	p.S656V	ENST00000310581	NM_198253.2	656	TCg/GTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	73	276	0				ENST00000310581	NM_198253.2																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149460399	149460399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	339	905	0	ENST00000286301.3:c.238G>A	p.Gly80Arg	p.G80R	ENST00000286301	NM_005211.3	80	Ggg/Agg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681675	30681675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	285	832	2	ENST00000376406.3:c.422C>T	p.Ser141Phe	p.S141F	ENST00000376406	NM_014641.2	141	tCc/tTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178569	32178569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	240	971	3	ENST00000375023.3:c.2825G>A	p.Gly942Glu	p.G942E	ENST00000375023	NM_004557.3	942	gGg/gAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066599	94066599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	229	831	2	ENST00000369303.4:c.1160G>A	p.Gly387Glu	p.G387E	ENST00000369303	NM_004440.3	387	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068042	94068042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	313	797	0	ENST00000369303.4:c.920C>T	p.Ser307Phe	p.S307F	ENST00000369303	NM_004440.3	307	tCc/tTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547271	106547271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	307	667	0	ENST00000369096.4:c.508G>A	p.Glu170Lys	p.E170K	ENST00000369096	NM_001198.3	170	Gag/Aag																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983275	149983275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	262	967	4	ENST00000253339.5:c.2983C>T	p.Arg995Cys	p.R995C	ENST00000253339		995	Cgc/Tgc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459558	50459558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	157	477	0	ENST00000331340.3:c.847C>T	p.Leu283Phe	p.L283F	ENST00000331340	NM_006060.4	283	Ctt/Ttt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878458	151878458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	421	1021	1	ENST00000262189.6:c.6487C>T	p.Pro2163Ser	p.P2163S	ENST00000262189	NM_170606.2	2163	Cct/Tct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884370	151884370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	247	577	0	ENST00000262189.6:c.4985C>T	p.Pro1662Leu	p.P1662L	ENST00000262189	NM_170606.2	1662	cCc/cTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965339	68965340	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	197	834	1	ENST00000288368.4:c.951_952delinsTT	p.His318Tyr	p.H318Y	ENST00000288368	NM_024870.2	317	ttCCat/ttTTat																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738689	145738689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	418	986	0	ENST00000428558.2:c.2375C>T	p.Pro792Leu	p.P792L	ENST00000428558	NM_004260.3	792	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517993	8517993	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	232	842	0	ENST00000356435.5:c.1398G>A	p.Trp466Ter	p.W466*	ENST00000356435		466	tgG/tgA																																																																														
TEK	7010	MSKCC	GRCh37	9	27228298	27228298	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	118	794	0	ENST00000380036.4:c.3295C>T	p.Arg1099Ter	p.R1099*	ENST00000380036	NM_000459.3	1099	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411527	63411527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	334	547	1	ENST00000330258.3:c.1640C>T	p.Ser547Phe	p.S547F	ENST00000330258	NM_152424.3	547	tCc/tTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	338	488	1	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	345	803	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70411647	70411647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	34	624	0	ENST00000373644.4:c.4321G>T	p.Gly1441Trp	p.G1441W	ENST00000373644	NM_030625.2	1441	Ggg/Tgg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074195	8074195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	75	483	2	ENST00000377482.5:c.464C>T	p.Pro155Leu	p.P155L	ENST00000377482	NM_018948.3	155	cCg/cTg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9778776	9778776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	74	718	0	ENST00000377346.4:c.1045C>T	p.His349Tyr	p.H349Y	ENST00000377346	NM_005026.3	349	Cac/Tac																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184652	11184652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	85	655	0	ENST00000361445.4:c.6565C>T	p.His2189Tyr	p.H2189Y	ENST00000361445	NM_004958.3	2189	Cat/Tat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255047	16255047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	40	413	0	ENST00000375759.3:c.2312C>T	p.Pro771Leu	p.P771L	ENST00000375759	NM_015001.2	771	cCt/cTt																																																																														
SDHB	6390	MSKCC	GRCh37	1	17349134	17349134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	51	745	0	ENST00000375499.3:c.734C>T	p.Thr245Ile	p.T245I	ENST00000375499	NM_003000.2	245	aCc/aTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099325	27099325	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	275	737	2	ENST00000324856.7:c.3562C>T	p.Gln1188Ter	p.Q1188*	ENST00000324856	NM_006015.4	1188	Cag/Tag																																																																														
MPL	4352	MSKCC	GRCh37	1	43804269	43804269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	261	729	0	ENST00000372470.3:c.269G>A	p.Arg90Gln	p.R90Q	ENST00000372470	NM_005373.2	90	cGa/cAa																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46511683	46511683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	88	915	1	ENST00000262741.5:c.1094G>A	p.Arg365Gln	p.R365Q	ENST00000262741	NM_003629.3	365	cGa/cAa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46726971	46726971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	251	664	1	ENST00000371975.4:c.805C>T	p.Pro269Ser	p.P269S	ENST00000371975	NM_003579.3	269	Ccc/Tcc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444662	78444663	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	55	564	1	ENST00000370768.2:c.26_27delinsTT	p.Pro9Leu	p.P9L	ENST00000370768	NM_003902.3	9	cCC/cTT																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699325	117699325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	173	670	1	ENST00000369458.3:c.316G>A	p.Asp106Asn	p.D106N	ENST00000369458	NM_024626.3	106	Gat/Aat																																																																														
DDR2	4921	MSKCC	GRCh37	1	162735832	162735832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	105	713	0	ENST00000367921.3:c.1141C>T	p.Pro381Ser	p.P381S	ENST00000367921	NM_006182.2	381	Cct/Tct																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981285	201981285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	97	853	0	ENST00000359651.3:c.364C>T	p.His122Tyr	p.H122Y	ENST00000359651		122	Cat/Tat																																																																														
RET	5979	MSKCC	GRCh37	10	43609036	43609036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	113	746	0	ENST00000355710.3:c.1792G>A	p.Glu598Lys	p.E598K	ENST00000355710	NM_020975.4	598	Gag/Aag																																																																														
TET1	80312	MSKCC	GRCh37	10	70333555	70333555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150689919		P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	169	676	0	ENST00000373644.4:c.1460C>T	p.Ser487Leu	p.S487L	ENST00000373644	NM_030625.2	487	tCa/tTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70405515	70405515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	194	761	0	ENST00000373644.4:c.3029C>T	p.Ser1010Leu	p.S1010L	ENST00000373644	NM_030625.2	1010	tCa/tTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70405923	70405923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	213	917	1	ENST00000373644.4:c.3437C>T	p.Thr1146Ile	p.T1146I	ENST00000373644	NM_030625.2	1146	aCc/aTc																																																																														
TET1	80312	MSKCC	GRCh37	10	70432683	70432683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	106	759	0	ENST00000373644.4:c.4705G>A	p.Glu1569Lys	p.E1569K	ENST00000373644	NM_030625.2	1569	Gag/Aag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123256157	123256158	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	102	809	1	ENST00000358487.5:c.1751_1752delinsCT	p.Met584Thr	p.M584T	ENST00000358487	NM_000141.4	584	aTG/aCT																																																																														
WT1	7490	MSKCC	GRCh37	11	32414292	32414292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	66	603	0	ENST00000332351.3:c.1259C>T	p.Pro420Leu	p.P420L	ENST00000332351	NM_024426.4	420	cCa/cTa																																																																														
WT1	7490	MSKCC	GRCh37	11	32417928	32417928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	83	676	0	ENST00000332351.3:c.1124C>T	p.Ala375Val	p.A375V	ENST00000332351	NM_024426.4	375	gCc/gTc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466022	69466022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	181	929	2	ENST00000227507.2:c.860C>T	p.Pro287Leu	p.P287L	ENST00000227507	NM_053056.2	287	cCc/cTc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588211	69588211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	55	759	1	ENST00000168712.1:c.487C>T	p.Pro163Ser	p.P163S	ENST00000168712	NM_002007.2	163	Ccc/Tcc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633608	69633608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	36	169	2	ENST00000334134.2:c.94C>T	p.Arg32Cys	p.R32C	ENST00000334134	NM_005247.2	32	Cgt/Tgt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94212866	94212866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	188	660	0	ENST00000323929.3:c.376C>A	p.His126Asn	p.H126N	ENST00000323929	NM_005591.3	126	Cat/Aat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18576896	18576896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	193	742	1	ENST00000266497.5:c.2304G>A	p.Trp768Ter	p.W768*	ENST00000266497		768	tgG/tgA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650671	18650671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	58	505	1	ENST00000266497.5:c.2882G>A	p.Gly961Glu	p.G961E	ENST00000266497		961	gGa/gAa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628690	21628690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	237	798	0	ENST00000421138.2:c.1018C>T	p.His340Tyr	p.H340Y	ENST00000421138		340	Cat/Tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432350	49432350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	125	887	0	ENST00000301067.7:c.8789C>T	p.Pro2930Leu	p.P2930L	ENST00000301067	NM_003482.3	2930	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443901	49443901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	121	955	1	ENST00000301067.7:c.3470C>T	p.Pro1157Leu	p.P1157L	ENST00000301067	NM_003482.3	1157	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444974	49444974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	80	743	0	ENST00000301067.7:c.2492C>T	p.Ser831Leu	p.S831L	ENST00000301067	NM_003482.3	831	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448290	49448336	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCCCCATTCTCCTCACTCACCTCCAGGTTCTCCTAGGTGGGCAGGT	TGCCCCATTCTCCTCACTCACCTCCAGGTTCTCCTAGGTGGGCAGGT	-			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	150	712	0	ENST00000301067.7:c.375_400+21del		p.X125_splice	ENST00000301067	NM_003482.3	125																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864817	57864817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	94	820	0	ENST00000228682.2:c.2294C>T	p.Pro765Leu	p.P765L	ENST00000228682	NM_005269.2	765	cCc/cTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133209020	133209020	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	72	831	2	ENST00000320574.5:c.6211C>T	p.Gln2071Ter	p.Q2071*	ENST00000320574	NM_006231.2	2071	Cag/Tag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549251	21549251	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	148	1138	0	ENST00000382592.4:c.3025A>G	p.Ser1009Gly	p.S1009G	ENST00000382592	NM_014572.2	1009	Agc/Ggc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893575	28893575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	87	541	0	ENST00000282397.4:c.3271G>A	p.Glu1091Lys	p.E1091K	ENST00000282397	NM_002019.4	1091	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28971169	28971169	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	89	569	0	ENST00000282397.4:c.1588T>A	p.Ser530Thr	p.S530T	ENST00000282397	NM_002019.4	530	Tct/Act																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004206	29004206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	46	476	0	ENST00000282397.4:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000282397	NM_002019.4	363	Ccc/Tcc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041725	29041725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	82	602	0	ENST00000282397.4:c.94C>T	p.Pro32Ser	p.P32S	ENST00000282397	NM_002019.4	32	Cct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912904	32912904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	93	545	0	ENST00000380152.3:c.4412G>A	p.Arg1471Lys	p.R1471K	ENST00000380152		1471	aGa/aAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32931942	32931942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	80	545	1	ENST00000380152.3:c.7681C>T	p.Gln2561Ter	p.Q2561*	ENST00000380152		2561	Cag/Tag																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281927	49281927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	116	872	0	ENST00000282018.3:c.974C>T	p.Pro325Leu	p.P325L	ENST00000282018	NM_020377.2	325	cCa/cTa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574662	95574662	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	114	451	0	ENST00000343455.3:c.2435A>T	p.Gln812Leu	p.Q812L	ENST00000343455	NM_177438.2	812	cAg/cTg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	174	944	0	ENST00000307102.5:c.371C>T	p.Pro124Leu	p.P124L	ENST00000307102	NM_002755.3	124	cCg/cTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420231	88420231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	65	674	1	ENST00000360948.2:c.2455G>A	p.Glu819Lys	p.E819K	ENST00000360948	NM_001012338.2	819	Gag/Aag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2124271	2124271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	294	1031	1	ENST00000219476.3:c.2426C>T	p.Ser809Phe	p.S809F	ENST00000219476	NM_000548.3	809	tCc/tTc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222275	2222275	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149059378		P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	425	1007	1	ENST00000326181.6:c.559C>T	p.His187Tyr	p.H187Y	ENST00000326181	NM_032271.2	187	Cac/Tac																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640061	3640061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	220	1159	0	ENST00000294008.3:c.3578C>T	p.Ser1193Phe	p.S1193F	ENST00000294008	NM_032444.2	1193	tCc/tTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777961	3777961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	267	1248	1	ENST00000262367.5:c.7087C>T	p.Pro2363Ser	p.P2363S	ENST00000262367	NM_004380.2	2363	Ccg/Tcg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934581	9934581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	209	734	0	ENST00000330684.3:c.1574C>T	p.Ser525Phe	p.S525F	ENST00000330684	NM_001134407.1	525	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576873	7576873	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	197	879	0	ENST00000269305.4:c.973G>T	p.Gly325Ter	p.G325*	ENST00000269305	NM_001126112.2	325	Gga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29665053	29665053	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	189	725	2	ENST00000358273.4:c.6715C>T	p.Gln2239Ter	p.Q2239*	ENST00000358273	NM_001042492.2	2239	Caa/Taa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872646	37872646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	117	1055	1	ENST00000269571.5:c.1606C>T	p.Arg536Trp	p.R536W	ENST00000269571		536	Cgg/Tgg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40491367	40491367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	205	886	1	ENST00000264657.5:c.433G>A	p.Glu145Lys	p.E145K	ENST00000264657	NM_139276.2	145	Gag/Aag																																																																														
EZH1	2145	MSKCC	GRCh37	17	40871210	40871210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	149	662	0	ENST00000428826.2:c.680C>T	p.Ser227Phe	p.S227F	ENST00000428826		227	tCc/tTc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39644757	39644757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	150	521	0	ENST00000262039.4:c.2486C>T	p.Pro829Leu	p.P829L	ENST00000262039	NM_002647.2	829	cCa/cTa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56376664	56376664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	122	825	0	ENST00000348428.3:c.704C>T	p.Ser235Phe	p.S235F	ENST00000348428	NM_006785.3	235	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210784	5210784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	77	901	1	ENST00000357368.4:c.5267C>T	p.Pro1756Leu	p.P1756L	ENST00000357368	NM_002850.3	1756	cCg/cTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5229591	5229592	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	36	219	0	ENST00000357368.4:c.2259_2260delinsTT	p.Arg754Cys	p.R754C	ENST00000357368	NM_002850.3	753	atCCgc/atTTgc																																																																														
INSR	3643	MSKCC	GRCh37	19	7125532	7125532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	48	728	1	ENST00000302850.5:c.3020C>T	p.Pro1007Leu	p.P1007L	ENST00000302850	NM_000208.2	1007	cCa/cTa																																																																														
INSR	3643	MSKCC	GRCh37	19	7172370	7172370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	69	767	0	ENST00000302850.5:c.1199C>T	p.Ser400Phe	p.S400F	ENST00000302850	NM_000208.2	400	tCc/tTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7174711	7174711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	121	747	0	ENST00000302850.5:c.1006C>T	p.Pro336Ser	p.P336S	ENST00000302850	NM_000208.2	336	Ccc/Tcc																																																																														
CALR	811	MSKCC	GRCh37	19	13051631	13051631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	179	828	0	ENST00000316448.5:c.890C>T	p.Pro297Leu	p.P297L	ENST00000316448	NM_004343.3	297	cCc/cTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968249	18968249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	100	829	0	ENST00000262803.5:c.2089C>T	p.Arg697Cys	p.R697C	ENST00000262803	NM_002911.3	697	Cgc/Tgc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257164	19257164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	101	696	0	ENST00000162023.5:c.799C>T	p.Pro267Ser	p.P267S	ENST00000162023		267	Cct/Tct																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257881	19257881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	106	1076	0	ENST00000162023.5:c.505C>T	p.Pro169Ser	p.P169S	ENST00000162023		169	Ccc/Tcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224181	36224182	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	160	829	2	ENST00000222270.7:c.6731_6732delinsAT	p.Pro2244His	p.P2244H	ENST00000222270	NM_014727.1	2244	cCC/cAT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227851	36227851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	226	1177	0	ENST00000222270.7:c.7336C>G	p.Arg2446Gly	p.R2446G	ENST00000222270	NM_014727.1	2446	Cga/Gga																																																																														
AXL	558	MSKCC	GRCh37	19	41744057	41744057	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	68	711	0	ENST00000301178.4:c.992G>A	p.Gly331Glu	p.G331E	ENST00000301178	NM_021913.4	331	gGa/gAa																																																																														
AXL	558	MSKCC	GRCh37	19	41754650	41754650	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	180	848	0	ENST00000301178.4:c.1636G>A	p.Glu546Lys	p.E546K	ENST00000301178	NM_021913.4	546	Gag/Aag																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085773	16085773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	79	622	0	ENST00000281043.3:c.949G>A	p.Glu317Lys	p.E317K	ENST00000281043	NM_005378.4	317	Gag/Aag																																																																														
ALK	238	MSKCC	GRCh37	2	29419721	29419721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	120	511	1	ENST00000389048.3:c.4079G>T	p.Arg1360Leu	p.R1360L	ENST00000389048	NM_004304.4	1360	cGg/cTg																																																																														
ALK	238	MSKCC	GRCh37	2	29420472	29420472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	251	725	2	ENST00000389048.3:c.4009G>A	p.Glu1337Lys	p.E1337K	ENST00000389048	NM_004304.4	1337	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	29432701	29432701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	236	715	0	ENST00000389048.3:c.3787G>A	p.Gly1263Arg	p.G1263R	ENST00000389048	NM_004304.4	1263	Gga/Aga																																																																														
ALK	238	MSKCC	GRCh37	2	29541246	29541246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	165	658	0	ENST00000389048.3:c.1571C>T	p.Thr524Ile	p.T524I	ENST00000389048	NM_004304.4	524	aCt/aTt																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872881	136872881	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	117	443	0	ENST00000241393.3:c.617T>C	p.Val206Ala	p.V206A	ENST00000241393	NM_003467.2	206	gTt/gCt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488679	212488679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	175	651	1	ENST00000342788.4:c.2170C>A	p.Leu724Ile	p.L724I	ENST00000342788	NM_005235.2	724	Ctt/Att																																																																														
PAK7	0	MSKCC	GRCh37	20	9538263	9538263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	206	777	1	ENST00000353224.5:c.1735G>A	p.Asp579Asn	p.D579N	ENST00000353224	NM_177990.2	579	Gat/Aat																																																																														
PAK7	0	MSKCC	GRCh37	20	9560902	9560902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	110	659	1	ENST00000353224.5:c.880G>A	p.Glu294Lys	p.E294K	ENST00000353224	NM_177990.2	294	Gaa/Aaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9624936	9624936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	93	526	1	ENST00000353224.5:c.41C>T	p.Pro14Leu	p.P14L	ENST00000353224	NM_177990.2	14	cCg/cTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024180	31024180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	197	758	0	ENST00000375687.4:c.3665C>T	p.Ser1222Phe	p.S1222F	ENST00000375687	NM_015338.5	1222	tCc/tTc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376789	31376789	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	111	697	0	ENST00000328111.2:c.784C>T	p.Gln262Ter	p.Q262*	ENST00000328111	NM_006892.3	262	Cag/Tag																																																																														
TOP1	7150	MSKCC	GRCh37	20	39744976	39744976	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	169	718	0	ENST00000361337.2:c.1766T>C	p.Phe589Ser	p.F589S	ENST00000361337	NM_003286.2	589	tTc/tCc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770575	40770575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1294592345		P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	149	686	1	ENST00000373198.4:c.2807G>A	p.Arg936Gln	p.R936Q	ENST00000373198	NM_133170.3	936	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400142	41400142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	70	742	1	ENST00000373198.4:c.617G>A	p.Gly206Glu	p.G206E	ENST00000373198	NM_133170.3	206	gGg/gAg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281275	46281275	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	41	458	0	ENST00000371998.3:c.4072C>T	p.Gln1358Ter	p.Q1358*	ENST00000371998		1358	Cag/Tag																																																																														
ERG	2078	MSKCC	GRCh37	21	39775521	39775522	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	123	785	1	ENST00000288319.7:c.498_499delinsAT	p.Glu167Ter	p.E167*	ENST00000288319	NM_182918.3	166	aaGGaa/aaATaa																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45651316	45651316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	147	861	0	ENST00000407780.3:c.709G>A	p.Gly237Arg	p.G237R	ENST00000407780	NM_001283052.1	237	Gga/Aga																																																																														
CRKL	1399	MSKCC	GRCh37	22	21272398	21272398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	235	1033	1	ENST00000354336.3:c.176C>T	p.Ser59Phe	p.S59F	ENST00000354336	NM_005207.3	59	tCc/tTc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458240	12458240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	90	699	1	ENST00000287820.6:c.857G>A	p.Gly286Glu	p.G286E	ENST00000287820	NM_015869.4	286	gGa/gAa																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458537	12458537	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140204299		P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	106	877	3	ENST00000287820.6:c.1154G>A	p.Arg385Gln	p.R385Q	ENST00000287820	NM_015869.4	385	cGa/cAa																																																																														
MST1	4485	MSKCC	GRCh37	3	49723525	49723525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	16	80	1	ENST00000449682.2:c.1117C>T	p.Arg373Trp	p.R373W	ENST00000449682	NM_020998.3	373	Cgg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637717	52637717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	85	772	2	ENST00000394830.3:c.2599G>A	p.Glu867Lys	p.E867K	ENST00000394830	NM_018313.4	867	Gaa/Aaa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72861888	72861888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	192	866	0	ENST00000325599.8:c.994C>T	p.Pro332Ser	p.P332S	ENST00000325599	NM_018130.2	332	Cca/Tca																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391097	89391097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	201	868	0	ENST00000336596.2:c.1163G>A	p.Gly388Glu	p.G388E	ENST00000336596	NM_005233.5	388	gGa/gAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521711	89521711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	125	623	0	ENST00000336596.2:c.2788G>A	p.Glu930Lys	p.E930K	ENST00000336596	NM_005233.5	930	Gaa/Aaa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644711	134644711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	70	749	1	ENST00000398015.3:c.112C>T	p.Pro38Ser	p.P38S	ENST00000398015	NM_004441.4	38	Cct/Tct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178942511	178942511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	84	545	0	ENST00000263967.3:c.2318C>T	p.Ser773Phe	p.S773F	ENST00000263967	NM_006218.2	773	tCc/tTc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665116	182665116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	150	576	1	ENST00000292782.4:c.610C>T	p.His204Tyr	p.H204Y	ENST00000292782	NM_020640.2	204	Cat/Tat																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190873	185190873	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144909413		P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	213	907	1	ENST00000265026.3:c.1754G>A	p.Arg585Gln	p.R585Q	ENST00000265026	NM_004721.4	585	cGa/cAa																																																																														
BCL6	604	MSKCC	GRCh37	3	187444525	187444525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	99	747	0	ENST00000232014.4:c.1702C>T	p.His568Tyr	p.H568Y	ENST00000232014	NM_001130845.1	568	Cat/Tat																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803244	1803244	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	139	904	0	ENST00000260795.2:c.596A>C	p.His199Pro	p.H199P	ENST00000260795		199	cAc/cCc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803246	1803246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	140	900	0	ENST00000260795.2:c.598C>T	p.Arg200Cys	p.R200C	ENST00000260795		200	Cgc/Tgc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133733	55133733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	203	657	0	ENST00000257290.5:c.946G>A	p.Glu316Lys	p.E316K	ENST00000257290	NM_006206.4	316	Gaa/Aaa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139895	55139895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	58	432	0	ENST00000257290.5:c.1556C>T	p.Pro519Leu	p.P519L	ENST00000257290	NM_006206.4	519	cCc/cTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141059	55141059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	191	560	0	ENST00000257290.5:c.1705G>A	p.Gly569Arg	p.G569R	ENST00000257290	NM_006206.4	569	Gga/Aga																																																																														
KDR	3791	MSKCC	GRCh37	4	55964326	55964327	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	212	546	2	ENST00000263923.4:c.2486_2487delinsAT	p.Phe829Tyr	p.F829Y	ENST00000263923	NM_002253.2	829	tTC/tAT																																																																														
TET2	54790	MSKCC	GRCh37	4	106157551	106157551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	71	435	0	ENST00000380013.4:c.2452C>T	p.Pro818Ser	p.P818S	ENST00000380013	NM_001127208.2	818	Cct/Tct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534340	187534341	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	79	787	2	ENST00000441802.2:c.9385_9386delinsTT	p.Pro3129Phe	p.P3129F	ENST00000441802	NM_005245.3	3129	CCt/TTt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526371	31526371	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	194	1361	1	ENST00000344624.3:c.669A>T	p.Glu223Asp	p.E223D	ENST00000344624		223	gaA/gaT																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526631	31526631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	96	772	0	ENST00000344624.3:c.409C>T	p.Pro137Ser	p.P137S	ENST00000344624		137	Cct/Tct																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871199	35871199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	65	474	0	ENST00000303115.3:c.421G>A	p.Glu141Lys	p.E141K	ENST00000303115	NM_002185.3	141	Gaa/Aaa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876133	35876133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	194	672	0	ENST00000303115.3:c.925C>T	p.His309Tyr	p.H309Y	ENST00000303115	NM_002185.3	309	Cat/Tat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950648	38950648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776074870		P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	150	575	0	ENST00000357387.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000357387	NM_152756.3	1101	tCg/tTg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149452999	149453000	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	144	640	1	ENST00000286301.3:c.946_947delinsAA	p.Gly316Lys	p.G316K	ENST00000286301	NM_005211.3	316	GGg/AAg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460362	149460362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	137	599	0	ENST00000286301.3:c.275G>A	p.Gly92Glu	p.G92E	ENST00000286301	NM_005211.3	92	gGa/gAa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500563	149500563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	80	811	0	ENST00000261799.4:c.2474G>A	p.Arg825Lys	p.R825K	ENST00000261799	NM_002609.3	825	aGa/aAa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500827	149500827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	232	896	1	ENST00000261799.4:c.2403G>A	p.Met801Ile	p.M801I	ENST00000261799	NM_002609.3	801	atG/atA																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520253	176520253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	104	893	1	ENST00000292408.4:c.1172G>A	p.Arg391Gln	p.R391Q	ENST00000292408	NM_213647.1	391	cGa/cAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046746	180046746	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	162	928	0	ENST00000261937.6:c.2566T>C	p.Phe856Leu	p.F856L	ENST00000261937	NM_182925.4	856	Ttc/Ctc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048881	180048881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	190	1157	0	ENST00000261937.6:c.1681G>A	p.Glu561Lys	p.E561K	ENST00000261937	NM_182925.4	561	Gaa/Aaa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180051017	180051017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	78	980	1	ENST00000261937.6:c.1466G>A	p.Trp489Ter	p.W489*	ENST00000261937	NM_182925.4	489	tGg/tAg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056291	180056291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199942873		P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	203	1099	0	ENST00000261937.6:c.953G>A	p.Arg318Gln	p.R318Q	ENST00000261937	NM_182925.4	318	cGa/cAa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20490458	20490458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	184	749	1	ENST00000346618.3:c.1195C>T	p.Pro399Ser	p.P399S	ENST00000346618	NM_001949.4	399	Cct/Tct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181926	32181926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	108	860	1	ENST00000375023.3:c.2128C>T	p.Pro710Ser	p.P710S	ENST00000375023	NM_004557.3	710	Ccc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956523	93956523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	67	520	0	ENST00000369303.4:c.2713G>A	p.Gly905Arg	p.G905R	ENST00000369303	NM_004440.3	905	Gga/Aga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969189	93969189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	62	493	0	ENST00000369303.4:c.1807C>T	p.Pro603Ser	p.P603S	ENST00000369303	NM_004440.3	603	Cca/Tca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117650525	117650525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	244	970	1	ENST00000368508.3:c.5333G>A	p.Gly1778Glu	p.G1778E	ENST00000368508	NM_002944.2	1778	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710750	117710750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	70	509	0	ENST00000368508.3:c.1522G>A	p.Asp508Asn	p.D508N	ENST00000368508	NM_002944.2	508	Gac/Aac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725504	117725504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	93	713	1	ENST00000368508.3:c.377G>A	p.Gly126Glu	p.G126E	ENST00000368508	NM_002944.2	126	gGa/gAa																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519343	137519343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	108	429	2	ENST00000367739.4:c.1295C>T	p.Pro432Leu	p.P432L	ENST00000367739	NM_000416.2	432	cCa/cTa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016306	150016306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	113	764	0	ENST00000253339.5:c.400G>A	p.Ala134Thr	p.A134T	ENST00000253339		134	Gca/Aca																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023244	150023244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	64	614	0	ENST00000253339.5:c.19C>T	p.Pro7Ser	p.P7S	ENST00000253339		7	Cca/Tca																																																																														
PARK2	0	MSKCC	GRCh37	6	161771153	161771153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	148	741	0	ENST00000366898.1:c.1376G>A	p.Gly459Glu	p.G459E	ENST00000366898	NM_004562.2	459	gGg/gAg																																																																														
PARK2	0	MSKCC	GRCh37	6	162683745	162683745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	65	736	0	ENST00000366898.1:c.224G>A	p.Arg75Lys	p.R75K	ENST00000366898	NM_004562.2	75	aGa/aAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2949757	2949757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	120	941	0	ENST00000396946.4:c.3187G>A	p.Asp1063Asn	p.D1063N	ENST00000396946	NM_032415.4	1063	Gac/Aac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956940	2956940	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	88	771	0	ENST00000396946.4:c.2687T>A	p.Phe896Tyr	p.F896Y	ENST00000396946	NM_032415.4	896	tTt/tAt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983953	2983953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	115	1016	2	ENST00000396946.4:c.577G>A	p.Glu193Lys	p.E193K	ENST00000396946	NM_032415.4	193	Gag/Aag																																																																														
HGF	3082	MSKCC	GRCh37	7	81392156	81392156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	71	512	0	ENST00000222390.5:c.121G>A	p.Glu41Lys	p.E41K	ENST00000222390	NM_000601.4	41	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509117	106509117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	100	737	0	ENST00000359195.3:c.1111C>T	p.Pro371Ser	p.P371S	ENST00000359195	NM_002649.2	371	Ccc/Tcc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520081	106520081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	105	482	0	ENST00000359195.3:c.2509G>A	p.Asp837Asn	p.D837N	ENST00000359195	NM_002649.2	837	Gat/Aat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526694	106526694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	98	643	1	ENST00000359195.3:c.2987G>A	p.Gly996Glu	p.G996E	ENST00000359195	NM_002649.2	996	gGa/gAa																																																																														
MET	4233	MSKCC	GRCh37	7	116340054	116340054	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	118	379	0	ENST00000397752.3:c.916A>T	p.Lys306Ter	p.K306*	ENST00000397752	NM_000245.2	306	Aag/Tag																																																																														
MET	4233	MSKCC	GRCh37	7	116397692	116397692	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	165	560	0	ENST00000397752.3:c.1966G>A	p.Asp656Asn	p.D656N	ENST00000397752	NM_000245.2	656	Gat/Aat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151876977	151876977	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	55	510	1	ENST00000262189.6:c.7384C>T	p.Gln2462Ter	p.Q2462*	ENST00000262189	NM_170606.2	2462	Cag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031690	69031690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	93	772	2	ENST00000288368.4:c.3445C>T	p.Arg1149Cys	p.R1149C	ENST00000288368	NM_024870.2	1149	Cgc/Tgc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141572607	141572607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	244	788	0	ENST00000220592.5:c.463C>T	p.Pro155Ser	p.P155S	ENST00000220592	NM_012154.3	155	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521384	8521384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	285	826	0	ENST00000356435.5:c.854G>A	p.Gly285Glu	p.G285E	ENST00000356435		285	gGa/gAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521505	8521505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	219	729	0	ENST00000356435.5:c.733C>T	p.His245Tyr	p.H245Y	ENST00000356435		245	Cat/Tat																																																																														
TEK	7010	MSKCC	GRCh37	9	27197468	27197468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	94	965	0	ENST00000380036.4:c.1780C>T	p.Pro594Ser	p.P594S	ENST00000380036	NM_000459.3	594	Cca/Tca																																																																														
TEK	7010	MSKCC	GRCh37	9	27203010	27203010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	64	758	1	ENST00000380036.4:c.2102G>A	p.Gly701Asp	p.G701D	ENST00000380036	NM_000459.3	701	gGc/gAc																																																																														
SYK	6850	MSKCC	GRCh37	9	93637034	93637034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	64	598	0	ENST00000375746.1:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000375746	NM_001174167.1	362	Gag/Aag																																																																														
SYK	6850	MSKCC	GRCh37	9	93641110	93641110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	76	904	1	ENST00000375746.1:c.1456G>A	p.Glu486Lys	p.E486K	ENST00000375746	NM_001174167.1	486	Gag/Aag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209525	98209525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	96	722	1	ENST00000331920.6:c.4013G>A	p.Arg1338His	p.R1338H	ENST00000331920	NM_000264.3	1338	cGc/cAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209616	98209617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761353734		P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	58	651	1	ENST00000331920.6:c.3921dup	p.Arg1308GlnfsTer17	p.R1308Qfs*17	ENST00000331920	NM_000264.3	1307	-/C																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220422	98220422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	270	776	0	ENST00000331920.6:c.3041C>T	p.Pro1014Leu	p.P1014L	ENST00000331920	NM_000264.3	1014	cCc/cTc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249911	110249911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	251	724	0	ENST00000374672.4:c.764C>T	p.Pro255Leu	p.P255L	ENST00000374672	NM_004235.4	255	cCt/cTt																																																																														
ABL1	25	MSKCC	GRCh37	9	133738328	133738329	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	110	601	2	ENST00000318560.5:c.728_729delinsTT	p.Thr243Ile	p.T243I	ENST00000318560	NM_005157.4	243	aCC/aTT																																																																														
RXRA	6256	MSKCC	GRCh37	9	137293646	137293646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	174	1144	2	ENST00000481739.1:c.197C>T	p.Ser66Leu	p.S66L	ENST00000481739	NM_002957.4	66	tCg/tTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400192	139400192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	93	892	0	ENST00000277541.6:c.4156C>T	p.Pro1386Ser	p.P1386S	ENST00000277541	NM_017617.3	1386	Ccg/Tcg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321375	1321375	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	69	437	0	ENST00000381566.1:c.380T>G	p.Phe127Cys	p.F127C	ENST00000381566		127	tTt/tGt																																																																														
AR	367	MSKCC	GRCh37	X	66766286	66766286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	75	291	1	ENST00000374690.3:c.1298C>T	p.Ser433Leu	p.S433L	ENST00000374690	NM_000044.3	433	tCa/tTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76813008	76813008	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	235	370	0	ENST00000373344.5:c.6613A>C	p.Thr2205Pro	p.T2205P	ENST00000373344	NM_000489.3	2205	Act/Cct																																																																														
XIAP	331	MSKCC	GRCh37	X	123034363	123034363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	78	292	1	ENST00000355640.3:c.1120C>T	p.Pro374Ser	p.P374S	ENST00000355640		374	Cct/Tct																																																																														
ERG	2078	MSKCC	GRCh37	21	39775521	39775521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	121	785	0	ENST00000288319.7:c.499G>T	p.Glu167Ter	p.E167*	ENST00000288319	NM_182918.3	167	Gaa/Taa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149452999	149452999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	144	640	1	ENST00000286301.3:c.947G>A	p.Gly316Glu	p.G316E	ENST00000286301	NM_005211.3	316	gGg/gAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	510	520	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	182	354	0				ENST00000310581	NM_198253.2																																																																																
POLE	5426	MSKCC	GRCh37	12	133249230	133249230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	293	686	0	ENST00000320574.5:c.1669C>T	p.Pro557Ser	p.P557S	ENST00000320574	NM_006231.2	557	Cct/Tct																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123298175	123298175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	329	512	0	ENST00000358487.5:c.679G>A	p.Gly227Arg	p.G227R	ENST00000358487	NM_000141.4	227	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7572997	7572997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	255	470	0	ENST00000269305.4:c.1112C>T	p.Ser371Phe	p.S371F	ENST00000269305	NM_001126112.2	371	tCc/tTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146502	55146502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	193	346	0	ENST00000257290.5:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000257290	NM_006206.4	726	Gaa/Aaa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240692	53240692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	289	628	1	ENST00000375401.3:c.1388C>T	p.Thr463Ile	p.T463I	ENST00000375401	NM_004187.3	463	aCc/aTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	59	425	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	63	180	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41400190	41400190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	68	391	0	ENST00000373198.4:c.569G>A	p.Arg190Lys	p.R190K	ENST00000373198	NM_133170.3	190	aGa/aAa																																																																														
RAC2	5880	MSKCC	GRCh37	22	37628840	37628840	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0024994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	354	278	0	ENST00000249071.6:c.225+1G>A		p.X75_splice	ENST00000249071	NM_002872.4	75																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974702	21974702	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	104	219	0	ENST00000304494.5:c.125A>T	p.Asn42Ile	p.N42I	ENST00000304494	NM_000077.4	42	aAt/aTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974702	21974702	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	104	219	0	ENST00000304494.5:c.125A>T	p.Asn42Ile	p.N42I	ENST00000304494	NM_000077.4	42	aAt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	182	630	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	378	742	1	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
CIC	23152	MSKCC	GRCh37	19	42797777	42797777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	476	615	0	ENST00000575354.2:c.3829C>T	p.Arg1277Cys	p.R1277C	ENST00000575354	NM_015125.3	1277	Cgc/Tgc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164586	36164586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	105	433	0	ENST00000300305.3:c.1289C>T	p.Pro430Leu	p.P430L	ENST00000300305		430	cCg/cTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76937519	76937520	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0025064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	143	243	0	ENST00000373344.5:c.3228_3229del	p.Ser1077ArgfsTer3	p.S1077Rfs*3	ENST00000373344	NM_000489.3	1076	tcTTca/tcca																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	149	497	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440334	52440334	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	177	458	0	ENST00000460680.1:c.718A>T	p.Lys240Ter	p.K240*	ENST00000460680	NM_004656.3	240	Aag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	102	440	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400190	41400190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	205	368	0	ENST00000373198.4:c.569G>A	p.Arg190Lys	p.R190K	ENST00000373198	NM_133170.3	190	aGa/aAa																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201900	67201900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	336	487	1	ENST00000312629.5:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000312629	NM_003952.2	367	cCg/cTg																																																																														
MET	4233	MSKCC	GRCh37	7	116340201	116340201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	164	226	0	ENST00000397752.3:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000397752	NM_000245.2	355	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	161	340	0				ENST00000310581	NM_198253.2																																																																																
STAT5A	6776	MSKCC	GRCh37	17	40461481	40461481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	411	672	0	ENST00000345506.4:c.2201C>T	p.Pro734Leu	p.P734L	ENST00000345506	NM_003152.3	734	cCc/cTc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193218985	193218985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	53	260	0	ENST00000367435.3:c.1543T>C	p.Trp515Arg	p.W515R	ENST00000367435	NM_024529.4	515	Tgg/Cgg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850723	63850723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	159	313	0	ENST00000279873.7:c.1501C>T	p.Gln501Ter	p.Q501*	ENST00000279873	NM_032199.2	501	Cag/Tag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3642706	3642706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	268	478	0	ENST00000294008.3:c.2321C>T	p.Ala774Val	p.A774V	ENST00000294008	NM_032444.2	774	gCc/gTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47143021	47143021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	138	516	0	ENST00000409792.3:c.4942G>T	p.Val1648Phe	p.V1648F	ENST00000409792	NM_014159.6	1648	Gtt/Ttt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161984	47161984	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	140	322	0	ENST00000409792.3:c.4142T>G	p.Leu1381Ter	p.L1381*	ENST00000409792	NM_014159.6	1381	tTa/tGa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047230	180047230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	339	622	3	ENST00000261937.6:c.2485G>A	p.Glu829Lys	p.E829K	ENST00000261937	NM_182925.4	829	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81374338	81374338	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202185530		P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	129	339	0	ENST00000222390.5:c.724C>T	p.Arg242Trp	p.R242W	ENST00000222390	NM_000601.4	242	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518120	8518121	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0025093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	182	341	0	ENST00000356435.5:c.1270_1271delinsAA	p.Val424Asn	p.V424N	ENST00000356435		424	GTc/AAc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	67	398	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593662	55593664	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0025271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	207	562	0	ENST00000288135.5:c.1729_1731del	p.Pro577del	p.P577del	ENST00000288135	NM_000222.2	576	ctTCCt/ctt																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245912910	245912910	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	131	475	0	ENST00000388985.4:c.1242G>C	p.Leu414Phe	p.L414F	ENST00000388985		414	ttG/ttC																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813411	102813411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	69	504	0	ENST00000307046.8:c.278A>T	p.Asp93Val	p.D93V	ENST00000307046	NM_001111285.1	93	gAt/gTt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867565	45867565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	92	617	0	ENST00000391945.4:c.743G>A	p.Ser248Asn	p.S248N	ENST00000391945	NM_000400.3	248	aGc/aAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	142	463	0				ENST00000310581	NM_198253.2																																																																																
PAK7	0	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	135	528	0	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673130	30673130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	69	508	1	ENST00000376406.3:c.3830C>T	p.Ser1277Phe	p.S1277F	ENST00000376406	NM_014641.2	1277	tCt/tTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	144	561	0	ENST00000288602.6:c.1803A>C	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaC																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210709	36210709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	223	666	0	ENST00000222270.7:c.460C>T	p.Arg154Cys	p.R154C	ENST00000222270	NM_014727.1	154	Cgc/Tgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330547	65330547	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	218	598	0	ENST00000342505.4:c.1099T>G	p.Ser367Ala	p.S367A	ENST00000342505	NM_002227.2	367	Tct/Gct																																																																														
WT1	7490	MSKCC	GRCh37	11	32456797	32456797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	206	664	1	ENST00000332351.3:c.95G>A	p.Gly32Glu	p.G32E	ENST00000332351	NM_024426.4	32	gGa/gAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422712	49422712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	211	585	0	ENST00000301067.7:c.14281C>T	p.Leu4761Phe	p.L4761F	ENST00000301067	NM_003482.3	4761	Ctt/Ttt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436084	49436084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	125	360	0	ENST00000301067.7:c.5897C>T	p.Pro1966Leu	p.P1966L	ENST00000301067	NM_003482.3	1966	cCc/cTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560494	95560494	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	159	477	0	ENST00000343455.3:c.5096-1G>A		p.X1699_splice	ENST00000343455	NM_177438.2	1699																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828381	72828381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	162	631	2	ENST00000268489.5:c.8200C>T	p.His2734Tyr	p.H2734Y	ENST00000268489	NM_006885.3	2734	Cac/Tac																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63545699	63545699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	194	610	0	ENST00000307078.5:c.895G>C	p.Asp299His	p.D299H	ENST00000307078	NM_004655.3	299	Gac/Cac																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119768	70119768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	179	606	0	ENST00000245479.2:c.770G>A	p.Arg257His	p.R257H	ENST00000245479	NM_000346.3	257	cGc/cAc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39584367	39584409	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAAACAGGCCTTGGAACTTCTGGGAAAATGGAAGCCGATG	GGCCAAACAGGCCTTGGAACTTCTGGGAAAATGGAAGCCGATG	-			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	94	385	1	ENST00000262039.4:c.1033_1075del	p.Ala345MetfsTer2	p.A345Mfs*2	ENST00000262039	NM_002647.2	344	gaGGCCAAACAGGCCTTGGAACTTCTGGGAAAATGGAAGCCGATG/ga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274344	5274345	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	143	437	0	ENST00000357368.4:c.102_103delinsAA	p.Phe35Ile	p.F35I	ENST00000357368	NM_002850.3	34	agGTtt/agAAtt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224343	36224344	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	267	735	2	ENST00000222270.7:c.6893_6894delinsTT	p.Pro2298Leu	p.P2298L	ENST00000222270	NM_014727.1	2298	cCC/cTT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224713	36224713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	301	828	1	ENST00000222270.7:c.7099C>T	p.Pro2367Ser	p.P2367S	ENST00000222270	NM_014727.1	2367	Ccc/Tcc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25994410	25994410	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	110	341	1	ENST00000435504.4:c.404-1G>A		p.X135_splice	ENST00000435504		135																																																																															
PPARG	5468	MSKCC	GRCh37	3	12447438	12447438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	189	623	1	ENST00000287820.6:c.677C>T	p.Ser226Phe	p.S226F	ENST00000287820	NM_015869.4	226	tCc/tTc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934849	49934849	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	328	623	0	ENST00000296474.3:c.2047G>A	p.Glu683Lys	p.E683K	ENST00000296474	NM_002447.2	683	Gag/Aag																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185169089	185169089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	742	555	0	ENST00000265026.3:c.1184G>A	p.Arg395Gln	p.R395Q	ENST00000265026	NM_004721.4	395	cGa/cAa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80074648	80074648	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	154	550	0	ENST00000265081.6:c.2428T>G	p.Phe810Val	p.F810V	ENST00000265081	NM_002439.4	810	Ttt/Gtt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517785	176517785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	248	705	0	ENST00000292408.4:c.395C>T	p.Ser132Phe	p.S132F	ENST00000292408	NM_213647.1	132	tCc/tTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547265	106547265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	125	379	0	ENST00000369096.4:c.502C>T	p.Pro168Ser	p.P168S	ENST00000369096	NM_001198.3	168	Ccc/Tcc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2952956	2952956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	241	705	2	ENST00000396946.4:c.2984C>T	p.Ser995Leu	p.S995L	ENST00000396946	NM_032415.4	995	tCg/tTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266443	55266443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	163	559	1	ENST00000275493.2:c.2735C>T	p.Ser912Phe	p.S912F	ENST00000275493	NM_005228.3	912	tCc/tTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231109	98231109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	291	577	0	ENST00000331920.6:c.2174C>T	p.Pro725Leu	p.P725L	ENST00000331920	NM_000264.3	725	cCc/cTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391172	139391172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	333	752	0	ENST00000277541.6:c.7019C>T	p.Pro2340Leu	p.P2340L	ENST00000277541	NM_017617.3	2340	cCc/cTc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	339	746	1	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356269	66356269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200754741		P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	72	613	0	ENST00000273854.3:c.1228G>A	p.Gly410Ser	p.G410S	ENST00000273854	NM_004439.5	410	Ggt/Agt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246447	46246447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	17	372	0	ENST00000334344.6:c.4541C>T	p.Thr1514Ile	p.T1514I	ENST00000334344	NM_152641.2	1514	aCt/aTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500886	8500886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	19	552	1	ENST00000356435.5:c.1996C>T	p.Pro666Ser	p.P666S	ENST00000356435		666	Cct/Tct																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987144	36987144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	48	616	0	ENST00000354822.5:c.545A>G	p.Asn182Ser	p.N182S	ENST00000354822	NM_001079668.2	182	aAc/aGc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67358670	67358670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	76	521	0	ENST00000327367.4:c.178G>A	p.Val60Ile	p.V60I	ENST00000327367	NM_005902.3	60	Gtc/Atc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992292	72992292	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140602496		P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	104	821	1	ENST00000268489.5:c.1753G>A	p.Gly585Ser	p.G585S	ENST00000268489	NM_006885.3	585	Ggc/Agc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356247	66356247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	85	698	0	ENST00000273854.3:c.1250G>A	p.Arg417Gln	p.R417Q	ENST00000273854	NM_004439.5	417	cGg/cAg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099858	157099858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	84	540	0	ENST00000346085.5:c.795G>A	p.Met265Ile	p.M265I	ENST00000346085	NM_020732.3	265	atG/atA																																																																														
BTK	695	MSKCC	GRCh37	X	100611845	100611845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	32	357	1	ENST00000308731.7:c.1276G>A	p.Asp426Asn	p.D426N	ENST00000308731	NM_000061.2	426	Gac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993405	72993405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	75	752	0	ENST00000268489.5:c.640G>A	p.Ala214Thr	p.A214T	ENST00000268489	NM_006885.3	214	Gct/Act																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807582	1807582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145183329		P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	39	671	0	ENST00000260795.2:c.1751C>T	p.Pro584Leu	p.P584L	ENST00000260795		584	cCg/cTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777863	3777863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	77	819	0	ENST00000262367.5:c.7185A>G	p.Ile2395Met	p.I2395M	ENST00000262367	NM_004380.2	2395	atA/atG																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046467	30046467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	47	570	2	ENST00000331968.5:c.2716G>A	p.Gly906Ser	p.G906S	ENST00000331968	NM_002742.2	906	Ggt/Agt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300845	137300845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	53	647	0	ENST00000481739.1:c.490C>A	p.Arg164Ser	p.R164S	ENST00000481739	NM_002957.4	164	Cgc/Agc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792669	33792669	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	22	185	0	ENST00000498907.2:c.652A>G	p.Met218Val	p.M218V	ENST00000498907	NM_004364.3	218	Atg/Gtg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922811	44922811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	32	249	0	ENST00000377967.4:c.1672G>A	p.Val558Ile	p.V558I	ENST00000377967	NM_021140.2	558	Gtc/Atc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799180	88799180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	36	671	2	ENST00000360948.2:c.205G>A	p.Ala69Thr	p.A69T	ENST00000360948	NM_001012338.2	69	Gcc/Acc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923175	39923175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	42	307	0	ENST00000378444.4:c.3533G>A	p.Ser1178Asn	p.S1178N	ENST00000378444	NM_001123385.1	1178	aGt/aAt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11297908	11297908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	26	508	0	ENST00000361445.4:c.2200C>T	p.Leu734Phe	p.L734F	ENST00000361445	NM_004958.3	734	Ctc/Ttc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199569	16199570	+	missense_variant	Missense_Mutation	DNP	TG	TG	CA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	58	535	2	ENST00000375759.3:c.342_343inv	p.Ala115Thr	p.A115T	ENST00000375759	NM_015001.2	114	ccTGct/ccCAct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202844	16202845	+	missense_variant	Missense_Mutation	DNP	CG	CG	TA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	76	571	2	ENST00000375759.3:c.552_553delinsTA	p.Ala185Thr	p.A185T	ENST00000375759	NM_015001.2	184	taCGct/taTAct																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46597588	46597588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	34	670	0	ENST00000262741.5:c.37G>A	p.Ala13Thr	p.A13T	ENST00000262741	NM_003629.3	13	Gca/Aca																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46597605	46597606	+	missense_variant	Missense_Mutation	DNP	CT	CT	TC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	30	601	0	ENST00000262741.5:c.19_20delinsGA	p.Ser7Asp	p.S7D	ENST00000262741	NM_003629.3	7	AGt/GAt																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51436096	51436096	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	28	454	0	ENST00000262662.1:c.56A>T	p.Glu19Val	p.E19V	ENST00000262662		19	gAg/gTg																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51436108	51436108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	30	463	0	ENST00000262662.1:c.68G>A	p.Ser23Asn	p.S23N	ENST00000262662		23	aGt/aAt																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51436121	51436121	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	33	468	0	ENST00000262662.1:c.81T>G	p.Asn27Lys	p.N27K	ENST00000262662		27	aaT/aaG																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115282445	115282445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	37	604	0	ENST00000438362.2:c.205G>A	p.Ala69Thr	p.A69T	ENST00000438362	NM_001242891.1	69	Gca/Aca																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849872	156849872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	65	646	0	ENST00000524377.1:c.2128G>A	p.Val710Met	p.V710M	ENST00000524377	NM_002529.3	710	Gtg/Atg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115817	8115817	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	41	656	0	ENST00000346208.3:c.1163A>G	p.Asn388Ser	p.N388S	ENST00000346208		388	aAc/aGc																																																																														
RET	5979	MSKCC	GRCh37	10	43623584	43623585	+	missense_variant	Missense_Mutation	DNP	GA	GA	AG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	35	453	0	ENST00000355710.3:c.3212_3213delinsAG	p.Gly1071Glu	p.G1071E	ENST00000355710	NM_020975.4	1071	gGA/gAG																																																																														
RET	5979	MSKCC	GRCh37	10	43623625	43623625	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	48	547	0	ENST00000355710.3:c.3253A>T	p.Thr1085Ser	p.T1085S	ENST00000355710	NM_020975.4	1085	Act/Tct																																																																														
RET	5979	MSKCC	GRCh37	10	43623629	43623629	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	54	545	1	ENST00000355710.3:c.3257G>T	p.Gly1086Val	p.G1086V	ENST00000355710	NM_020975.4	1086	gGg/gTg																																																																														
RET	5979	MSKCC	GRCh37	10	43623634	43623634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	57	546	1	ENST00000355710.3:c.3262C>T	p.Pro1088Ser	p.P1088S	ENST00000355710	NM_020975.4	1088	Cca/Tca																																																																														
RET	5979	MSKCC	GRCh37	10	43623643	43623643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	56	541	0	ENST00000355710.3:c.3271C>G	p.Pro1091Ala	p.P1091A	ENST00000355710	NM_020975.4	1091	Cca/Gca																																																																														
RET	5979	MSKCC	GRCh37	10	43623673	43623673	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	48	563	0	ENST00000355710.3:c.3301C>G	p.Leu1101Val	p.L1101V	ENST00000355710	NM_020975.4	1101	Ctt/Gtt																																																																														
RET	5979	MSKCC	GRCh37	10	43623680	43623680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	47	566	0	ENST00000355710.3:c.3308C>A	p.Pro1103His	p.P1103H	ENST00000355710	NM_020975.4	1103	cCc/cAc																																																																														
RET	5979	MSKCC	GRCh37	10	43623696	43623697	+	missense_variant	Missense_Mutation	DNP	AA	AA	TG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	32	564	1	ENST00000355710.3:c.3324_3325delinsTG	p.Leu1108_Met1109delinsPheVal	p.L1108_M1109delinsFV	ENST00000355710	NM_020975.4	1108	ttAAtg/ttTGtg																																																																														
RET	5979	MSKCC	GRCh37	10	43623704	43623704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	31	540	0	ENST00000355710.3:c.3332C>A	p.Thr1111Lys	p.T1111K	ENST00000355710	NM_020975.4	1111	aCg/aAg																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724437	112724438	+	missense_variant	Missense_Mutation	DNP	AT	AT	GG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	21	612	0	ENST00000369452.4:c.321_322delinsGG	p.Ser108Ala	p.S108A	ENST00000369452	NM_007373.3	107	ttATcc/ttGGcc																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724690	112724691	+	missense_variant	Missense_Mutation	DNP	GA	GA	AC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	29	633	2	ENST00000369452.4:c.574_575delinsAC	p.Asp192Thr	p.D192T	ENST00000369452	NM_007373.3	192	GAt/ACt																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724699	112724699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	28	618	0	ENST00000369452.4:c.583A>G	p.Thr195Ala	p.T195A	ENST00000369452	NM_007373.3	195	Acc/Gcc																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724769	112724769	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	19	416	0	ENST00000369452.4:c.653G>C	p.Ser218Thr	p.S218T	ENST00000369452	NM_007373.3	218	aGc/aCc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710607	114710607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	29	473	0	ENST00000543371.1:c.92G>T	p.Ser31Ile	p.S31I	ENST00000543371	NM_001198531.1	31	aGc/aTc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920429	114920429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	40	530	0	ENST00000543371.1:c.1370C>G	p.Thr457Ser	p.T457S	ENST00000543371	NM_001198531.1	457	aCt/aGt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925360	114925360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	66	605	0	ENST00000543371.1:c.1438C>G	p.Leu480Val	p.L480V	ENST00000543371	NM_001198531.1	480	Ctc/Gtc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274741	123274741	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	50	678	0	ENST00000358487.5:c.1177G>C	p.Val393Leu	p.V393L	ENST00000358487	NM_000141.4	393	Gta/Cta																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123276857	123276857	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	25	484	0	ENST00000358487.5:c.1060T>A	p.Ser354Thr	p.S354T	ENST00000358487	NM_000141.4	354	Tct/Act																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741804	17741804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	35	423	0	ENST00000250003.3:c.475G>A	p.Gly159Ser	p.G159S	ENST00000250003	NM_002478.4	159	Ggc/Agc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741917	17741917	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	16	262	0	ENST00000250003.3:c.588C>G	p.Asp196Glu	p.D196E	ENST00000250003	NM_002478.4	196	gaC/gaG																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589559	69589560	+	missense_variant	Missense_Mutation	DNP	CG	CG	GA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	41	331	0	ENST00000168712.1:c.293_294delinsTC	p.Ala98Val	p.A98V	ENST00000168712	NM_002007.2	98	gCG/gTC																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589567	69589567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	46	344	0	ENST00000168712.1:c.286C>A	p.Leu96Ile	p.L96I	ENST00000168712	NM_002007.2	96	Ctc/Atc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94908761	94908761	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	35	605	0	ENST00000536441.1:c.1293A>C	p.Arg431Ser	p.R431S	ENST00000536441	NM_144665.3	431	agA/agC																																																																														
SESN3	143686	MSKCC	GRCh37	11	94924640	94924640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	37	678	0	ENST00000536441.1:c.270G>C	p.Leu90Phe	p.L90F	ENST00000536441	NM_144665.3	90	ttG/ttC																																																																														
SESN3	143686	MSKCC	GRCh37	11	94924667	94924667	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	60	711	0	ENST00000536441.1:c.243A>C	p.Leu81Phe	p.L81F	ENST00000536441	NM_144665.3	81	ttA/ttC																																																																														
SESN3	143686	MSKCC	GRCh37	11	94924669	94924669	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	52	703	1	ENST00000536441.1:c.241T>A	p.Leu81Ile	p.L81I	ENST00000536441	NM_144665.3	81	Tta/Ata																																																																														
SESN3	143686	MSKCC	GRCh37	11	94924729	94924730	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	40	758	0	ENST00000536441.1:c.180_181delinsTC	p.Phe61Leu	p.F61L	ENST00000536441	NM_144665.3	60	aaCTtt/aaTCtt																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981808	101981829	+	missense_variant	Missense_Mutation	ONP	ACGGCCAACGTGCCCCAGACCG	ACGGCCAACGTGCCCCAGACCG	GGCGCCAACGTGCCGCACACGC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	73	673	1	ENST00000282441.5:c.229_250delinsGGCGCCAACGTGCCGCACACGC	p.Thr77_Val84delinsGlyAlaAsnValProHisThrLeu	p.T77_V84delinsGANVPHTL	ENST00000282441	NM_001130145.2	77	ACGGCCAACGTGCCCCAGACCGtg/GGCGCCAACGTGCCGCACACGCtg																																																																														
YAP1	10413	MSKCC	GRCh37	11	102076787	102076787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	46	662	0	ENST00000282441.5:c.966G>T	p.Gln322His	p.Q322H	ENST00000282441	NM_001130145.2	322	caG/caT																																																																														
CCND2	894	MSKCC	GRCh37	12	4383367	4383367	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	26	576	0	ENST00000261254.3:c.161A>T	p.Tyr54Phe	p.Y54F	ENST00000261254	NM_001759.3	54	tAc/tTc																																																																														
CCND2	894	MSKCC	GRCh37	12	4383372	4383372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	26	554	0	ENST00000261254.3:c.166C>A	p.Arg56Ser	p.R56S	ENST00000261254	NM_001759.3	56	Cgc/Agc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123880	46123880	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	29	425	0	ENST00000334344.6:c.146G>C	p.Gly49Ala	p.G49A	ENST00000334344	NM_152641.2	49	gGt/gCt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123916	46123916	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	22	326	0	ENST00000334344.6:c.182C>G	p.Ala61Gly	p.A61G	ENST00000334344	NM_152641.2	61	gCg/gGg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245408	46245408	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	28	493	0	ENST00000334344.6:c.3502T>A	p.Ser1168Thr	p.S1168T	ENST00000334344	NM_152641.2	1168	Tct/Act																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245455	46245456	+	missense_variant	Missense_Mutation	DNP	AC	AC	TA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	25	385	2	ENST00000334344.6:c.3549_3550delinsTA	p.Pro1184Thr	p.P1184T	ENST00000334344	NM_152641.2	1183	gcACct/gcTAct																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245456	46245456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	25	385	1	ENST00000334344.6:c.3550C>A	p.Pro1184Thr	p.P1184T	ENST00000334344	NM_152641.2	1184	Cct/Act																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245606	46245606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	13	347	0	ENST00000334344.6:c.3700A>G	p.Thr1234Ala	p.T1234A	ENST00000334344	NM_152641.2	1234	Act/Gct																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245677	46245678	+	missense_variant	Missense_Mutation	DNP	TG	TG	CA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	26	396	2	ENST00000334344.6:c.3771_3772inv	p.Val1258Ile	p.V1258I	ENST00000334344	NM_152641.2	1257	caTGtt/caCAtt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245731	46245732	+	missense_variant	Missense_Mutation	DNP	CA	CA	TG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	19	457	2	ENST00000334344.6:c.3825_3826inv	p.Thr1276Ala	p.T1276A	ENST00000334344	NM_152641.2	1275	gcCAca/gcTGca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245753	46245753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	26	454	0	ENST00000334344.6:c.3847A>G	p.Thr1283Ala	p.T1283A	ENST00000334344	NM_152641.2	1283	Aca/Gca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245773	46245773	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	22	455	0	ENST00000334344.6:c.3867T>G	p.His1289Gln	p.H1289Q	ENST00000334344	NM_152641.2	1289	caT/caG																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246080	46246080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	11	342	1	ENST00000334344.6:c.4174C>T	p.Pro1392Ser	p.P1392S	ENST00000334344	NM_152641.2	1392	Cca/Tca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246140	46246142	+	missense_variant	Missense_Mutation	ONP	CTA	CTA	GGG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	14	406	2	ENST00000334344.6:c.4234_4236delinsGGG	p.Leu1412Gly	p.L1412G	ENST00000334344	NM_152641.2	1412	CTA/GGG																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246249	46246249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	24	405	0	ENST00000334344.6:c.4343T>C	p.Leu1448Pro	p.L1448P	ENST00000334344	NM_152641.2	1448	cTt/cCt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246322	46246322	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	28	405	2	ENST00000334344.6:c.4416T>A	p.His1472Gln	p.H1472Q	ENST00000334344	NM_152641.2	1472	caT/caA																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246329	46246329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	26	410	0	ENST00000334344.6:c.4423A>G	p.Thr1475Ala	p.T1475A	ENST00000334344	NM_152641.2	1475	Acc/Gcc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246450	46246450	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	18	374	0	ENST00000334344.6:c.4544T>C	p.Val1515Ala	p.V1515A	ENST00000334344	NM_152641.2	1515	gTa/gCa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246471	46246471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	24	340	0	ENST00000334344.6:c.4565C>A	p.Thr1522Asn	p.T1522N	ENST00000334344	NM_152641.2	1522	aCt/aAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246487	46246488	+	missense_variant	Missense_Mutation	DNP	CG	CG	TC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	23	328	3	ENST00000334344.6:c.4581_4582delinsTC	p.Ala1528Pro	p.A1528P	ENST00000334344	NM_152641.2	1527	gtCGca/gtTCca																																																																														
POLE	5426	MSKCC	GRCh37	12	133215806	133215806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	68	657	1	ENST00000320574.5:c.5457G>T	p.Met1819Ile	p.M1819I	ENST00000320574	NM_006231.2	1819	atG/atT																																																																														
POLE	5426	MSKCC	GRCh37	12	133215862	133215862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	53	429	0	ENST00000320574.5:c.5401G>A	p.Gly1801Ser	p.G1801S	ENST00000320574	NM_006231.2	1801	Ggc/Agc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975670	26975670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	27	459	0	ENST00000381527.3:c.1178G>A	p.Ser393Asn	p.S393N	ENST00000381527	NM_001260.1	393	aGc/aAc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26978168	26978168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	52	634	0	ENST00000381527.3:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000381527	NM_001260.1	449	Gct/Act																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41239821	41239822	+	missense_variant	Missense_Mutation	DNP	CC	CC	GG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	81	608	2	ENST00000379561.5:c.528_529inv	p.Ala177Pro	p.A177P	ENST00000379561	NM_002015.3	176	tcGGcg/tcCCcg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437508	110437508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	42	586	0	ENST00000375856.3:c.893T>C	p.Phe298Ser	p.F298S	ENST00000375856	NM_003749.2	298	tTc/tCc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437610	110437610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	79	612	0	ENST00000375856.3:c.791T>C	p.Val264Ala	p.V264A	ENST00000375856	NM_003749.2	264	gTc/gCc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437697	110437697	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	46	653	0	ENST00000375856.3:c.704A>T	p.Gln235Leu	p.Q235L	ENST00000375856	NM_003749.2	235	cAg/cTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437974	110437974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	43	167	0	ENST00000375856.3:c.427G>C	p.Val143Leu	p.V143L	ENST00000375856	NM_003749.2	143	Gtc/Ctc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046435	30046447	+	stop_retained_variant,3_prime_UTR_variant	Silent	DEL	AGATGGAACTCAG	AGATGGAACTCAG	GATGCAACTTAA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	40	536	2	ENST00000331968.5:c.2736_*9delinsTTAAGTTGCATC		p.*912*	ENST00000331968	NM_002742.2	912																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987169	36987169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	51	613	0	ENST00000354822.5:c.520G>A	p.Gly174Ser	p.G174S	ENST00000354822	NM_001079668.2	174	Ggc/Agc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987187	36987187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	40	625	0	ENST00000354822.5:c.502A>G	p.Ser168Gly	p.S168G	ENST00000354822	NM_001079668.2	168	Agc/Ggc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061418	38061418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	49	542	1	ENST00000250448.2:c.571C>T	p.Leu191Phe	p.L191F	ENST00000250448	NM_004496.3	191	Ctc/Ttc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061506	38061507	+	missense_variant	Missense_Mutation	DNP	CG	CG	GC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	54	411	1	ENST00000250448.2:c.482_483delinsGC	p.Thr161Ser	p.T161S	ENST00000250448	NM_004496.3	161	aCG/aGC																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560260	95560261	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	17	444	1	ENST00000343455.3:c.5328_5329delinsAA	p.Leu1777Ile	p.L1777I	ENST00000343455	NM_177438.2	1776	caGCtt/caAAtt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562760	95562760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	27	436	0	ENST00000343455.3:c.4497G>T	p.Glu1499Asp	p.E1499D	ENST00000343455	NM_177438.2	1499	gaG/gaT																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570298	95570298	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	15	438	0	ENST00000343455.3:c.3435T>A	p.Asn1145Lys	p.N1145K	ENST00000343455	NM_177438.2	1145	aaT/aaA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570305	95570306	+	missense_variant	Missense_Mutation	DNP	AG	AG	GC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	16	432	0	ENST00000343455.3:c.3427_3428delinsGC	p.Leu1143Ala	p.L1143A	ENST00000343455	NM_177438.2	1143	CTa/GCa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570349	95570350	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	16	360	0	ENST00000343455.3:c.3383_3384insAGT	p.Val1128dup	p.V1128dup	ENST00000343455	NM_177438.2	1128	gtc/gtAGTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570376	95570376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	14	338	0	ENST00000343455.3:c.3357T>A	p.Asp1119Glu	p.D1119E	ENST00000343455	NM_177438.2	1119	gaT/gaA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95599774	95599774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	52	419	0	ENST00000343455.3:c.22C>T	p.Pro8Ser	p.P8S	ENST00000343455	NM_177438.2	8	Ccc/Tcc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95599790	95599791	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	40	380	0	ENST00000343455.3:c.2_5dup	p.Lys2AsnfsTer39	p.K2Nfs*39	ENST00000343455	NM_177438.2	2	aaa/aaTGAAa																																																																														
AKT1	207	MSKCC	GRCh37	14	105243063	105243063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	40	672	0	ENST00000349310.3:c.220A>G	p.Ile74Val	p.I74V	ENST00000349310	NM_001014432.1	74	Atc/Gtc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38591650	38591650	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	24	549	0	ENST00000299084.4:c.109A>G	p.Ser37Gly	p.S37G	ENST00000299084	NM_152594.2	37	Agt/Ggt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799194	88799194	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	38	685	0	ENST00000360948.2:c.191A>G	p.Asn64Ser	p.N64S	ENST00000360948	NM_001012338.2	64	aAc/aGc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631627	90631628	+	missense_variant	Missense_Mutation	DNP	TG	TG	GC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	42	619	0	ENST00000330062.3:c.641_642delinsGC	p.Ala214Gly	p.A214G	ENST00000330062	NM_002168.2	214	gCA/gGC																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631640	90631640	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	42	645	0	ENST00000330062.3:c.629A>T	p.Tyr210Phe	p.Y210F	ENST00000330062	NM_002168.2	210	tAc/tTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781216	3781217	+	missense_variant	Missense_Mutation	DNP	GC	GC	TG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	45	715	1	ENST00000262367.5:c.5148_5149delinsCA	p.Arg1717Ser	p.R1717S	ENST00000262367	NM_004380.2	1716	acGCgc/acCAgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781357	3781357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	68	754	0	ENST00000262367.5:c.5008C>T	p.Leu1670Phe	p.L1670F	ENST00000262367	NM_004380.2	1670	Ctc/Ttc																																																																														
CBFB	865	MSKCC	GRCh37	16	67063337	67063337	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	34	366	0	ENST00000412916.2:c.27A>C	p.Arg9Ser	p.R9S	ENST00000412916		9	agA/agC																																																																														
CBFB	865	MSKCC	GRCh37	16	67063668	67063669	+	missense_variant	Missense_Mutation	DNP	AC	AC	GA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	41	433	2	ENST00000412916.2:c.117_118delinsGA	p.Arg40Ser	p.R40S	ENST00000412916		39	gaACgc/gaGAgc																																																																														
CBFB	865	MSKCC	GRCh37	16	67070621	67070621	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	21	287	0	ENST00000412916.2:c.245G>C	p.Ser82Thr	p.S82T	ENST00000412916		82	aGc/aCc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821082	72821082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	63	630	1	ENST00000268489.5:c.11093C>T	p.Thr3698Met	p.T3698M	ENST00000268489	NM_006885.3	3698	aCg/aTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821095	72821096	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	54	664	2	ENST00000268489.5:c.11079_11080delinsAG	p.Thr3694Ala	p.T3694A	ENST00000268489	NM_006885.3	3693	ctGAcc/ctAGcc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821139	72821139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	76	585	0	ENST00000268489.5:c.11036T>C	p.Val3679Ala	p.V3679A	ENST00000268489	NM_006885.3	3679	gTg/gCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821442	72821443	+	missense_variant	Missense_Mutation	DNP	AA	AA	GG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	38	654	0	ENST00000268489.5:c.10732_10733delinsCC	p.Phe3578Pro	p.F3578P	ENST00000268489	NM_006885.3	3578	TTc/CCc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821520	72821521	+	missense_variant	Missense_Mutation	DNP	AA	AA	GG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	51	505	0	ENST00000268489.5:c.10654_10655delinsCC	p.Leu3552Pro	p.L3552P	ENST00000268489	NM_006885.3	3552	TTg/CCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821653	72821653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	23	104	0	ENST00000268489.5:c.10522G>A	p.Gly3508Ser	p.G3508S	ENST00000268489	NM_006885.3	3508	Ggc/Agc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821691	72821691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	40	296	0	ENST00000268489.5:c.10484T>C	p.Val3495Ala	p.V3495A	ENST00000268489	NM_006885.3	3495	gTg/gCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822026	72822029	+	missense_variant	Missense_Mutation	ONP	TAGT	TAGT	CGCC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	15	298	0	ENST00000268489.5:c.10146_10149delinsGGCG	p.Leu3383Ala	p.L3383A	ENST00000268489	NM_006885.3	3382	caACTA/caGGCG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822048	72822052	+	protein_altering_variant	In_Frame_Del	DEL	TGAAT	TGAAT	AA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	22	325	1	ENST00000268489.5:c.10123_10127delinsTT	p.Ile3375_Gln3376delinsLeu	p.I3375_Q3376delinsL	ENST00000268489	NM_006885.3	3375	ATTCAg/TTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822118	72822118	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	42	442	0	ENST00000268489.5:c.10057A>C	p.Met3353Leu	p.M3353L	ENST00000268489	NM_006885.3	3353	Atg/Ctg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827419	72827419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	53	642	0	ENST00000268489.5:c.9162C>A	p.Asp3054Glu	p.D3054E	ENST00000268489	NM_006885.3	3054	gaC/gaA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827563	72827563	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	59	657	0	ENST00000268489.5:c.9018A>C	p.Leu3006Phe	p.L3006F	ENST00000268489	NM_006885.3	3006	ttA/ttC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831451	72831452	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	23	504	1	ENST00000268489.5:c.5129_5130delinsTA	p.Ala1710Val	p.A1710V	ENST00000268489	NM_006885.3	1710	gCC/gTA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991527	72991527	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	76	739	0	ENST00000268489.5:c.2518A>T	p.Thr840Ser	p.T840S	ENST00000268489	NM_006885.3	840	Acc/Tcc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991534	72991547	+	missense_variant	Missense_Mutation	ONP	CTGTTGCAGTAACA	CTGTTGCAGTAACA	TTGCTGAAGCAGCG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	81	739	3	ENST00000268489.5:c.2498_2511delinsCGCTGCTTCAGCAA	p.Met833Thr	p.M833T	ENST00000268489	NM_006885.3	833	aTGTTACTGCAACAG/aCGCTGCTTCAGCAA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991542	72991543	+	missense_variant	Missense_Mutation	DNP	GT	GT	AG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	63	732	1	ENST00000268489.5:c.2502_2503delinsCT	p.Leu834Phe	p.L834F	ENST00000268489	NM_006885.3	834	ttACtg/ttCTtg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992153	72992153	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	69	569	0	ENST00000268489.5:c.1892T>G	p.Val631Gly	p.V631G	ENST00000268489	NM_006885.3	631	gTt/gGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992172	72992172	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	67	622	0	ENST00000268489.5:c.1873T>C	p.Ser625Pro	p.S625P	ENST00000268489	NM_006885.3	625	Tcc/Ccc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992272	72992275	+	missense_variant	Missense_Mutation	ONP	AGCG	AGCG	GATA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	65	798	5	ENST00000268489.5:c.1770_1773delinsTATC	p.Ala591Ile	p.A591I	ENST00000268489	NM_006885.3	590	ttCGCT/ttTATC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992324	72992324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	115	841	1	ENST00000268489.5:c.1721G>A	p.Ser574Asn	p.S574N	ENST00000268489	NM_006885.3	574	aGt/aAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992338	72992339	+	missense_variant	Missense_Mutation	DNP	AC	AC	GT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	121	836	1	ENST00000268489.5:c.1706_1707inv	p.Arg569His	p.R569H	ENST00000268489	NM_006885.3	569	cGT/cAC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992366	72992368	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	119	776	0	ENST00000268489.5:c.1677_1679del	p.Val560del	p.V560del	ENST00000268489	NM_006885.3	559	gtTGTc/gtc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992496	72992497	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCTGCTGCTGCC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	60	769	0	ENST00000268489.5:c.1548_1549insGGCAGCAGCAGC	p.Gly516_Ser517insGlySerSerSer	p.G516_S517insGSSS	ENST00000268489	NM_006885.3	516	-/GGCAGCAGCAGC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992503	72992504	+	missense_variant	Missense_Mutation	DNP	TG	TG	CA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	71	737	1	ENST00000268489.5:c.1541_1542inv	p.Ala514Val	p.A514V	ENST00000268489	NM_006885.3	514	gCA/gTG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992515	72992515	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	69	737	0	ENST00000268489.5:c.1530G>C	p.Glu510Asp	p.E510D	ENST00000268489	NM_006885.3	510	gaG/gaC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992521	72992521	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	67	743	0	ENST00000268489.5:c.1524T>G	p.His508Gln	p.H508Q	ENST00000268489	NM_006885.3	508	caT/caG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992542	72992542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	43	704	1	ENST00000268489.5:c.1503G>T	p.Glu501Asp	p.E501D	ENST00000268489	NM_006885.3	501	gaG/gaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992545	72992545	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	41	691	0	ENST00000268489.5:c.1500T>G	p.Asp500Glu	p.D500E	ENST00000268489	NM_006885.3	500	gaT/gaG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992992	72992992	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	71	856	0	ENST00000268489.5:c.1053A>T	p.Leu351Phe	p.L351F	ENST00000268489	NM_006885.3	351	ttA/ttT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993008	72993008	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	83	839	0	ENST00000268489.5:c.1037A>C	p.Asn346Thr	p.N346T	ENST00000268489	NM_006885.3	346	aAc/aCc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993109	72993109	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	82	732	0	ENST00000268489.5:c.936C>G	p.Asp312Glu	p.D312E	ENST00000268489	NM_006885.3	312	gaC/gaG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993375	72993376	+	missense_variant	Missense_Mutation	DNP	GC	GC	TG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	80	719	3	ENST00000268489.5:c.669_670delinsCA	p.Leu224Ile	p.L224I	ENST00000268489	NM_006885.3	223	ggGCtc/ggCAtc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993414	72993414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	74	744	1	ENST00000268489.5:c.631C>T	p.Pro211Ser	p.P211S	ENST00000268489	NM_006885.3	211	Cca/Tca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993962	72993962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	36	690	0	ENST00000268489.5:c.83A>G	p.Asn28Ser	p.N28S	ENST00000268489	NM_006885.3	28	aAc/aGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993967	72993967	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	41	687	2	ENST00000268489.5:c.78A>T	p.Glu26Asp	p.E26D	ENST00000268489	NM_006885.3	26	gaA/gaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72994017	72994017	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	43	633	0	ENST00000268489.5:c.28T>C	p.Ser10Pro	p.S10P	ENST00000268489	NM_006885.3	10	Tcg/Ccg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72994020	72994020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200637584		P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	44	651	1	ENST00000268489.5:c.25G>A	p.Val9Ile	p.V9I	ENST00000268489	NM_006885.3	9	Gtc/Atc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89345561	89345594	+	missense_variant	Missense_Mutation	ONP	GGGCGCCTGCGGCGTGATACAGCACAGGATCTTG	GGGCGCCTGCGGCGTGATACAGCACAGGATCTTG	TGGAGCCTGGGGAGTGATGTAGCAGAGGATTTTC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	22	110	1	ENST00000301030.4:c.7356_7389delinsGAAAATCCTCTGCTACATCACTCCCCAGGCTCCA	p.Cys2457Tyr	p.C2457Y	ENST00000301030	NM_001256183.1	2452	cgCAAGATCCTGTGCTGTATCACGCCGCAGGCGCCC/cgGAAAATCCTCTGCTACATCACTCCCCAGGCTCCA																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348964	89348964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	303	710	0	ENST00000301030.4:c.3986del	p.Pro1329LeufsTer16	p.P1329Lfs*16	ENST00000301030	NM_001256183.1	1329	cCt/ct																																																																														
NF1	4763	MSKCC	GRCh37	17	29490272	29490287	+	missense_variant	Missense_Mutation	ONP	TTTTCTTCACACCTGT	TTTTCTTCACACCTGT	CTTCATCCACACTTAC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	19	505	1	ENST00000358273.4:c.357_372delinsCTTCATCCACACTTAC	p.Leu121_Cys124delinsIleHisThrTyr	p.L121_C124delinsIHTY	ENST00000358273	NM_001042492.2	119	caTTTTCTTCACACCTGT/caCTTCATCCACACTTAC																																																																														
NF1	4763	MSKCC	GRCh37	17	29490341	29490341	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	20	558	0	ENST00000358273.4:c.426A>T	p.Leu142Phe	p.L142F	ENST00000358273	NM_001042492.2	142	ttA/ttT																																																																														
RARA	5914	MSKCC	GRCh37	17	38510556	38510556	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	30	426	0	ENST00000254066.5:c.810C>G	p.Ile270Met	p.I270M	ENST00000254066	NM_000964.3	270	atC/atG																																																																														
RARA	5914	MSKCC	GRCh37	17	38511541	38511542	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	39	536	2	ENST00000254066.5:c.1039_1040delinsAA	p.Arg347Lys	p.R347K	ENST00000254066	NM_000964.3	347	CGg/AAg																																																																														
RARA	5914	MSKCC	GRCh37	17	38511551	38511552	+	missense_variant	Missense_Mutation	DNP	TG	TG	AA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	39	562	0	ENST00000254066.5:c.1049_1050delinsAA	p.Met350Lys	p.M350K	ENST00000254066	NM_000964.3	350	aTG/aAA																																																																														
RARA	5914	MSKCC	GRCh37	17	38511583	38511583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	41	597	0	ENST00000254066.5:c.1081G>A	p.Val361Ile	p.V361I	ENST00000254066	NM_000964.3	361	Gtc/Atc																																																																														
RARA	5914	MSKCC	GRCh37	17	38512347	38512347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	32	529	0	ENST00000254066.5:c.1258C>A	p.Leu420Met	p.L420M	ENST00000254066	NM_000964.3	420	Ctg/Atg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554201	63554201	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	43	651	0	ENST00000307078.5:c.538T>A	p.Ser180Thr	p.S180T	ENST00000307078	NM_004655.3	180	Tcg/Acg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554261	63554261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	49	681	0	ENST00000307078.5:c.478G>A	p.Gly160Ser	p.G160S	ENST00000307078	NM_004655.3	160	Ggc/Agc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554356	63554356	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	76	709	0	ENST00000307078.5:c.383T>C	p.Leu128Ser	p.L128S	ENST00000307078	NM_004655.3	128	tTa/tCa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554378	63554378	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	71	720	0	ENST00000307078.5:c.361A>G	p.Asn121Asp	p.N121D	ENST00000307078	NM_004655.3	121	Aac/Gac																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118993	70119007	+	missense_variant	Missense_Mutation	ONP	GCAGAGGAGGCCACG	GCAGAGGAGGCCACG	CAGGAGGAGGGCTCC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	42	645	2	ENST00000245479.2:c.565_579delinsCAGGAGGAGGGCTCC	p.Ala189_Thr193delinsGlnGluGluGlySer	p.A189_T193delinsQEEGS	ENST00000245479	NM_000346.3	189	GCAGAGGAGGCCACG/CAGGAGGAGGGCTCC																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120330	70120330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	83	911	0	ENST00000245479.2:c.1332C>G	p.Asp444Glu	p.D444E	ENST00000245479	NM_000346.3	444	gaC/gaG																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120343	70120343	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	102	931	0	ENST00000245479.2:c.1345A>G	p.Ser449Gly	p.S449G	ENST00000245479	NM_000346.3	449	Agc/Ggc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120363	70120378	+	missense_variant	Missense_Mutation	ONP	GGCAGGCCAGGGCACC	GGCAGGCCAGGGCACC	CGCCGGGCAGAGCGGA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	61	927	3	ENST00000245479.2:c.1365_1380delinsCGCCGGGCAGAGCGGA	p.Gly459_Thr460delinsSerGly	p.G459_T460delinsSG	ENST00000245479	NM_000346.3	455	gcGGCAGGCCAGGGCACC/gcCGCCGGGCAGAGCGGA																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120412	70120412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	105	846	3	ENST00000245479.2:c.1414G>A	p.Ala472Thr	p.A472T	ENST00000245479	NM_000346.3	472	Gct/Act																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896608	78896608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	54	540	0	ENST00000306801.3:c.2605G>A	p.Val869Met	p.V869M	ENST00000306801	NM_020761.2	869	Gtg/Atg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896624	78896624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	37	450	0	ENST00000306801.3:c.2621C>T	p.Ala874Val	p.A874V	ENST00000306801	NM_020761.2	874	gCg/gTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246939	10246939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	38	606	3	ENST00000340748.4:c.4466C>A	p.Ala1489Asp	p.A1489D	ENST00000340748		1489	gCc/gAc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250805	10250820	+	missense_variant	Missense_Mutation	ONP	GGGCGGCCCGCCGCAC	GGGCGGCCCGCCGCAC	CGGGCGTCCCCCGCAG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	38	597	3	ENST00000340748.4:c.3660_3675delinsCTGCGGGGGACGCCCG	p.Pro1224Arg	p.P1224R	ENST00000340748		1220	ctGTGCGGCGGGCCGCCC/ctCTGCGGGGGACGCCCG																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602373	10602373	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	87	786	0	ENST00000171111.5:c.1205A>G	p.Gln402Arg	p.Q402R	ENST00000171111	NM_203500.1	402	cAg/cGg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602399	10602408	+	missense_variant	Missense_Mutation	ONP	CAGGGCGCTG	CAGGGCGCTG	GATGGCGGCC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	67	740	5	ENST00000171111.5:c.1170_1179delinsGGCCGCCATC	p.Ser391_Leu393delinsAlaAlaIle	p.S391_L393delinsAAI	ENST00000171111	NM_203500.1	390	tcCAGCGCCCTG/tcGGCCGCCATC																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602406	10602408	+	missense_variant	Missense_Mutation	ONP	CTG	CTG	GCC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	65	699	1	ENST00000171111.5:c.1170_1172delinsGGC	p.Ser391Ala	p.S391A	ENST00000171111	NM_203500.1	390	tcCAGc/tcGGCc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602743	10602743	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	54	660	0	ENST00000171111.5:c.835A>C	p.Asn279His	p.N279H	ENST00000171111	NM_203500.1	279	Aac/Cac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602755	10602755	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	56	683	0	ENST00000171111.5:c.823T>G	p.Ser275Ala	p.S275A	ENST00000171111	NM_203500.1	275	Tcg/Gcg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602818	10602819	+	missense_variant	Missense_Mutation	DNP	TG	TG	GC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	80	748	1	ENST00000171111.5:c.759_760delinsGC	p.Lys254Gln	p.K254Q	ENST00000171111	NM_203500.1	253	gtCAag/gtGCag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602870	10602870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	60	772	0	ENST00000171111.5:c.708C>G	p.Asp236Glu	p.D236E	ENST00000171111	NM_203500.1	236	gaC/gaG																																																																														
CARM1	10498	MSKCC	GRCh37	19	11024640	11024640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	47	601	0	ENST00000327064.4:c.757A>G	p.Ile253Val	p.I253V	ENST00000327064	NM_199141.1	253	Atc/Gtc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097085	11097085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	54	624	0	ENST00000344626.4:c.576G>C	p.Arg192Ser	p.R192S	ENST00000344626	NM_003072.3	192	agG/agC																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098513	11098514	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	49	580	0	ENST00000344626.4:c.1031_1032delinsAG	p.Pro344Gln	p.P344Q	ENST00000344626	NM_003072.3	344	cCA/cAG																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098531	11098531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	61	638	0	ENST00000344626.4:c.1049G>A	p.Ser350Asn	p.S350N	ENST00000344626	NM_003072.3	350	aGc/aAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349595	15349595	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	49	743	2	ENST00000263377.2:c.3979T>A	p.Leu1327Met	p.L1327M	ENST00000263377	NM_058243.2	1327	Ttg/Atg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375346	15375346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	41	603	2	ENST00000263377.2:c.1081C>A	p.Leu361Ile	p.L361I	ENST00000263377	NM_058243.2	361	Ctc/Atc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792355	33792355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	35	745	0	ENST00000498907.2:c.966C>G	p.Asp322Glu	p.D322E	ENST00000498907	NM_004364.3	322	gaC/gaG																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792364	33792365	+	missense_variant	Missense_Mutation	DNP	AC	AC	GG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	37	719	2	ENST00000498907.2:c.956_957delinsCC	p.Ser319Thr	p.S319T	ENST00000498907	NM_004364.3	319	aGT/aCC																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793064	33793065	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	43	373	2	ENST00000498907.2:c.256_257delinsAA	p.Arg86Lys	p.R86K	ENST00000498907	NM_004364.3	86	CGg/AAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229247	36229248	+	missense_variant	Missense_Mutation	DNP	AT	AT	GC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	45	702	0	ENST00000222270.7:c.7937_7938delinsGC	p.Asn2646Ser	p.N2646S	ENST00000222270	NM_014727.1	2646	aAT/aGC																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229289	36229289	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	76	701	0	ENST00000222270.7:c.7979T>A	p.Phe2660Tyr	p.F2660Y	ENST00000222270	NM_014727.1	2660	tTc/tAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229317	36229317	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	57	651	0	ENST00000222270.7:c.8007G>C	p.Gln2669His	p.Q2669H	ENST00000222270	NM_014727.1	2669	caG/caC																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229322	36229322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	53	665	0	ENST00000222270.7:c.8012A>G	p.His2671Arg	p.H2671R	ENST00000222270	NM_014727.1	2671	cAc/cGc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716032	52716033	+	missense_variant	Missense_Mutation	DNP	CA	CA	GC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	40	620	2	ENST00000322088.6:c.597_598delinsGC	p.Asp199_Asn200delinsGluHis	p.D199_N200delinsEH	ENST00000322088	NM_014225.5	199	gaCAac/gaGCac																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082313	16082313	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	65	691	0	ENST00000281043.3:c.127A>G	p.Thr43Ala	p.T43A	ENST00000281043	NM_005378.4	43	Acc/Gcc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082520	16082520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	32	559	1	ENST00000281043.3:c.334C>A	p.Leu112Ile	p.L112I	ENST00000281043	NM_005378.4	112	Ctc/Atc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99152264	99152264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	37	562	0	ENST00000074304.5:c.343G>A	p.Val115Ile	p.V115I	ENST00000074304	NM_001134224.1	115	Gtc/Atc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182134	99182135	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	23	450	0	ENST00000074304.5:c.2199_2200delinsTT	p.Leu734Phe	p.L734F	ENST00000074304	NM_001134224.1	733	agCCtt/agTTtt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99203979	99203979	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	23	485	0	ENST00000074304.5:c.2842A>T	p.Ser948Cys	p.S948C	ENST00000074304	NM_001134224.1	948	Agt/Tgt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99204027	99204027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	21	425	0	ENST00000074304.5:c.2890C>T	p.His964Tyr	p.H964Y	ENST00000074304	NM_001134224.1	964	Cat/Tat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198281561	198281570	+	protein_altering_variant	In_Frame_Del	DEL	GGACGCTGCT	GGACGCTGCT	AGATGCG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	41	561	2	ENST00000335508.6:c.561_570delinsCGCATCT	p.Ala189del	p.A189del	ENST00000335508	NM_012433.2	187	gcAGCAGCGTCC/gcCGCATCT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021670	31021670	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	23	535	0	ENST00000375687.4:c.1669A>T	p.Thr557Ser	p.T557S	ENST00000375687	NM_015338.5	557	Acc/Tcc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022282	31022283	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	36	457	1	ENST00000375687.4:c.1767_1768delinsAG	p.Thr590Ala	p.T590A	ENST00000375687	NM_015338.5	589	ccCAct/ccAGct																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31025063	31025064	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	24	510	2	ENST00000375687.4:c.4548_4549delinsTA	p.Gln1517Lys	p.Q1517K	ENST00000375687	NM_015338.5	1516	tgCCaa/tgTAaa																																																																														
SRC	6714	MSKCC	GRCh37	20	36024682	36024682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	96	721	0	ENST00000358208.4:c.671A>G	p.Asn224Ser	p.N224S	ENST00000358208		224	aAc/aGc																																																																														
SRC	6714	MSKCC	GRCh37	20	36031686	36031686	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	100	618	0	ENST00000358208.4:c.1515G>C	p.Glu505Asp	p.E505D	ENST00000358208		505	gaG/gaC																																																																														
GNAS	2778	MSKCC	GRCh37	20	57466791	57466791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	41	235	1	ENST00000371085.3:c.10C>T	p.Leu4Phe	p.L4F	ENST00000371085	NM_000516.4	4	Ctc/Ttc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206711	36206711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	48	624	0	ENST00000300305.3:c.801G>T	p.Met267Ile	p.M267I	ENST00000300305		267	atG/atT																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206746	36206746	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	71	580	0	ENST00000300305.3:c.766T>A	p.Ser256Thr	p.S256T	ENST00000300305		256	Tcc/Acc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206876	36206876	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	42	428	0	ENST00000300305.3:c.636T>G	p.Asp212Glu	p.D212E	ENST00000300305		212	gaT/gaG																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259328	36259328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	30	436	0	ENST00000300305.3:c.163G>C	p.Ala55Pro	p.A55P	ENST00000300305		55	Gcg/Ccg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259391	36259391	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	69	541	1	ENST00000300305.3:c.100G>A	p.Ala34Thr	p.A34T	ENST00000300305		34	Gcc/Acc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755782	39755782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	24	408	0	ENST00000288319.7:c.983G>A	p.Ser328Asn	p.S328N	ENST00000288319	NM_182918.3	328	aGc/aAc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24129419	24129419	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	43	459	0	ENST00000263121.7:c.63C>G	p.Asp21Glu	p.D21E	ENST00000263121	NM_003073.3	21	gaC/gaG																																																																														
NF2	4771	MSKCC	GRCh37	22	30000062	30000062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	33	589	0	ENST00000338641.4:c.75G>C	p.Arg25Ser	p.R25S	ENST00000338641	NM_000268.3	25	agG/agC																																																																														
EP300	2033	MSKCC	GRCh37	22	41572876	41572876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	83	621	1	ENST00000263253.7:c.5161G>A	p.Ala1721Thr	p.A1721T	ENST00000263253	NM_001429.3	1721	Gct/Act																																																																														
EP300	2033	MSKCC	GRCh37	22	41572882	41572882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	69	627	1	ENST00000263253.7:c.5167G>A	p.Ala1723Thr	p.A1723T	ENST00000263253	NM_001429.3	1723	Gcc/Acc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574795	41574795	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	94	700	0	ENST00000263253.7:c.7080A>T	p.Glu2360Asp	p.E2360D	ENST00000263253	NM_001429.3	2360	gaA/gaT																																																																														
EP300	2033	MSKCC	GRCh37	22	41574877	41574877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	55	605	1	ENST00000263253.7:c.7162G>A	p.Ala2388Thr	p.A2388T	ENST00000263253	NM_001429.3	2388	Gca/Aca																																																																														
EP300	2033	MSKCC	GRCh37	22	41574891	41574891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	52	616	0	ENST00000263253.7:c.7176C>A	p.Asp2392Glu	p.D2392E	ENST00000263253	NM_001429.3	2392	gaC/gaA																																																																														
EP300	2033	MSKCC	GRCh37	22	41574904	41574904	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	42	594	0	ENST00000263253.7:c.7189A>T	p.Thr2397Ser	p.T2397S	ENST00000263253	NM_001429.3	2397	Acc/Tcc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574909	41574909	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	43	583	0	ENST00000263253.7:c.7194T>G	p.Asp2398Glu	p.D2398E	ENST00000263253	NM_001429.3	2398	gaT/gaG																																																																														
EP300	2033	MSKCC	GRCh37	22	41574959	41574960	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	AG	AG	-			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	21	459	0	ENST00000263253.7:c.*2_*3del		p.*2415fs	ENST00000263253	NM_001429.3	2415	tAG/t																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436830	52436830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	46	745	0	ENST00000460680.1:c.1948C>T	p.Leu650Phe	p.L650F	ENST00000460680	NM_004656.3	650	Ctc/Ttc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588783	52588783	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	40	598	1	ENST00000394830.3:c.4245T>A	p.His1415Gln	p.H1415Q	ENST00000394830	NM_018313.4	1415	caT/caA																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588799	52588799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	57	565	3	ENST00000394830.3:c.4229G>T	p.Gly1410Val	p.G1410V	ENST00000394830	NM_018313.4	1410	gGg/gTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588839	52588839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	59	581	0	ENST00000394830.3:c.4189C>A	p.Leu1397Ile	p.L1397I	ENST00000394830	NM_018313.4	1397	Ctt/Att																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588887	52588888	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	26	519	2	ENST00000394830.3:c.4140_4141delinsAA	p.Met1380_Gly1381delinsIleSer	p.M1380_G1381delinsIS	ENST00000394830	NM_018313.4	1380	atGGgt/atAAgt																																																																														
MITF	4286	MSKCC	GRCh37	3	69928419	69928419	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	39	505	0	ENST00000352241.4:c.239T>A	p.Leu80Gln	p.L80Q	ENST00000352241	NM_198159.2	80	cTg/cAg																																																																														
MITF	4286	MSKCC	GRCh37	3	69987082	69987082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	39	593	0	ENST00000352241.4:c.464T>C	p.Val155Ala	p.V155A	ENST00000352241	NM_198159.2	155	gTc/gCc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021742	71021743	+	missense_variant	Missense_Mutation	DNP	AC	AC	TG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	44	544	1	ENST00000318789.4:c.1615_1616delinsCA	p.Val539Gln	p.V539Q	ENST00000318789	NM_032682.5	539	GTa/CAa																																																																														
RYBP	23429	MSKCC	GRCh37	3	72428273	72428273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	17	475	0	ENST00000477973.2:c.617C>G	p.Leu207Val	p.L207V	ENST00000477973	NM_012234.5	207	Ctg/Gtg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665307	138665309	+	missense_variant	Missense_Mutation	ONP	CGC	CGC	GCT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	66	734	2	ENST00000330315.3:c.256_258delinsAGC	p.Ala86Ser	p.A86S	ENST00000330315	NM_023067.3	86	GCG/AGC																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665411	138665411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	43	606	0	ENST00000330315.3:c.154G>T	p.Ala52Ser	p.A52S	ENST00000330315	NM_023067.3	52	Gcg/Tcg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430614	181430614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	43	488	0	ENST00000325404.1:c.466C>A	p.Arg156Ser	p.R156S	ENST00000325404	NM_003106.3	156	Cgc/Agc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430648	181430648	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	68	497	0	ENST00000325404.1:c.500G>C	p.Ser167Thr	p.S167T	ENST00000325404	NM_003106.3	167	aGc/aCc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430704	181430704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	72	519	1	ENST00000325404.1:c.556C>T	p.Leu186Phe	p.L186F	ENST00000325404	NM_003106.3	186	Ctc/Ttc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430716	181430717	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	72	538	1	ENST00000325404.1:c.568_569delinsAA	p.Gly190Asn	p.G190N	ENST00000325404	NM_003106.3	190	GGc/AAc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155356	185155356	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	22	517	0	ENST00000265026.3:c.597A>C	p.Glu199Asp	p.E199D	ENST00000265026	NM_004721.4	199	gaA/gaC																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502836	186502837	+	missense_variant	Missense_Mutation	DNP	GT	GT	TC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	44	567	0	ENST00000323963.5:c.294_295delinsTC	p.Glu98_Phe99delinsAspLeu	p.E98_F99delinsDL	ENST00000323963		98	gaGTtc/gaTCtc																																																																														
BCL6	604	MSKCC	GRCh37	3	187444608	187444618	+	missense_variant	Missense_Mutation	ONP	GTCTGCAGCGT	GTCTGCAGCGT	ACTTGCAGAGA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	32	569	2	ENST00000232014.4:c.1609_1619delinsTCTCTGCAAGT	p.Thr537_Thr540delinsSerLeuGlnVal	p.T537_T540delinsSLQV	ENST00000232014	NM_001130845.1	537	ACGCTGCAGACc/TCTCTGCAAGTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189526147	189526147	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	60	619	0	ENST00000264731.3:c.411C>G	p.Asp137Glu	p.D137E	ENST00000264731	NM_003722.4	137	gaC/gaG																																																																														
TP63	8626	MSKCC	GRCh37	3	189608609	189608609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	41	724	0	ENST00000264731.3:c.1684C>G	p.Leu562Val	p.L562V	ENST00000264731	NM_003722.4	562	Ctg/Gtg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807802	1807802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	43	586	0	ENST00000260795.2:c.1861C>A	p.Arg621Ser	p.R621S	ENST00000260795		621	Cgc/Agc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280010	66280010	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	20	243	0	ENST00000273854.3:c.1679C>G	p.Thr560Ser	p.T560S	ENST00000273854	NM_004439.5	560	aCc/aGc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280040	66280040	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	18	297	0	ENST00000273854.3:c.1649T>G	p.Val550Gly	p.V550G	ENST00000273854	NM_004439.5	550	gTc/gGc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356127	66356127	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	29	584	1	ENST00000273854.3:c.1370A>T	p.Tyr457Phe	p.Y457F	ENST00000273854	NM_004439.5	457	tAt/tTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356145	66356145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	27	614	1	ENST00000273854.3:c.1352G>A	p.Ser451Asn	p.S451N	ENST00000273854	NM_004439.5	451	aGc/aAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356148	66356149	+	missense_variant	Missense_Mutation	DNP	AA	AA	TG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	26	636	1	ENST00000273854.3:c.1348_1349delinsCA	p.Leu450Gln	p.L450Q	ENST00000273854	NM_004439.5	450	TTg/CAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356241	66356241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	89	716	0	ENST00000273854.3:c.1256G>C	p.Ser419Thr	p.S419T	ENST00000273854	NM_004439.5	419	aGc/aCc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356276	66356297	+	missense_variant	Missense_Mutation	ONP	CTCCTCACACACACCTGCATGG	CTCCTCACACACACCTGCATGG	TGCCTCGCACAGACCTGAGTGT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	43	596	2	ENST00000273854.3:c.1200_1221delinsACACTCAGGTCTGTGCGAGGCA	p.Ala402_Glu407delinsSerGlyLeuCysGluAla	p.A402_E407delinsSGLCEA	ENST00000273854	NM_004439.5	400	tcCCATGCAGGTGTGTGTGAGGAG/tcACACTCAGGTCTGTGCGAGGCA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356409	66356409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	49	446	0	ENST00000273854.3:c.1088A>G	p.Asn363Ser	p.N363S	ENST00000273854	NM_004439.5	363	aAt/aGt																																																																														
TET2	54790	MSKCC	GRCh37	4	106155716	106155716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	16	389	0	ENST00000380013.4:c.617T>C	p.Leu206Pro	p.L206P	ENST00000380013	NM_001127208.2	206	cTa/cCa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	142950033	142950033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	17	593	0	ENST00000262992.4:c.2677A>G	p.Ile893Val	p.I893V	ENST00000262992	NM_001101669.1	893	Atc/Gtc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143094867	143094867	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	23	513	0	ENST00000262992.4:c.1277C>G	p.Thr426Ser	p.T426S	ENST00000262992	NM_001101669.1	426	aCc/aGc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143094871	143094871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	24	498	1	ENST00000262992.4:c.1273G>T	p.Ala425Ser	p.A425S	ENST00000262992	NM_001101669.1	425	Gca/Tca																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143094887	143094887	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	21	544	1	ENST00000262992.4:c.1257A>T	p.Gln419His	p.Q419H	ENST00000262992	NM_001101669.1	419	caA/caT																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31401568	31401569	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	29	744	0	ENST00000344624.3:c.4095_4096delinsAA	p.Pro1366Thr	p.P1366T	ENST00000344624		1365	gaGCca/gaAAca																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56111425	56111425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	52	329	0	ENST00000399503.3:c.25G>A	p.Ala9Thr	p.A9T	ENST00000399503	NM_005921.1	9	Gcc/Acc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56183236	56183236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	32	481	0	ENST00000399503.3:c.4146G>T	p.Gln1382His	p.Q1382H	ENST00000399503	NM_005921.1	1382	caG/caT																																																																														
MSH3	4437	MSKCC	GRCh37	5	80074576	80074577	+	missense_variant	Missense_Mutation	DNP	GT	GT	AC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	20	606	4	ENST00000265081.6:c.2356_2357inv	p.Val786Thr	p.V786T	ENST00000265081	NM_002439.4	786	GTa/ACa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80074630	80074630	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	23	566	0	ENST00000265081.6:c.2410A>G	p.Ser804Gly	p.S804G	ENST00000265081	NM_002439.4	804	Agt/Ggt																																																																														
APC	324	MSKCC	GRCh37	5	112154765	112154765	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	24	545	0	ENST00000257430.4:c.1036T>G	p.Ser346Ala	p.S346A	ENST00000257430	NM_000038.5	346	Tcc/Gcc																																																																														
IRF4	3662	MSKCC	GRCh37	6	393287	393287	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	88	575	0	ENST00000380956.4:c.135G>C	p.Glu45Asp	p.E45D	ENST00000380956	NM_001195286.1	45	gaG/gaC																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43749695	43749695	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	41	458	0	ENST00000523873.1:c.548C>A	p.Pro183His	p.P183H	ENST00000523873		183	cCc/cAc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43749701	43749701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	42	501	0	ENST00000523873.1:c.554G>A	p.Gly185Glu	p.G185E	ENST00000523873		185	gGg/gAg																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43749769	43749770	+	missense_variant	Missense_Mutation	DNP	AA	AA	TT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	41	584	0	ENST00000523873.1:c.622_623inv	p.Asn208Phe	p.N208F	ENST00000523873		208	AAc/TTc																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64286819	64286819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	27	533	0	ENST00000370651.3:c.34G>A	p.Val12Ile	p.V12I	ENST00000370651	NM_003463.4	12	Gtc/Atc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066571	94066572	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	24	526	0	ENST00000369303.4:c.1187_1188delinsTA	p.Glu396Val	p.E396V	ENST00000369303	NM_004440.3	396	gAG/gTA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066661	94066661	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	25	572	0	ENST00000369303.4:c.1098A>C	p.Arg366Ser	p.R366S	ENST00000369303	NM_004440.3	366	agA/agC																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120774	94120774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	20	549	0	ENST00000369303.4:c.277G>A	p.Gly93Ser	p.G93S	ENST00000369303	NM_004440.3	93	Ggc/Agc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120780	94120780	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	20	568	0	ENST00000369303.4:c.271T>G	p.Ser91Ala	p.S91A	ENST00000369303	NM_004440.3	91	Tcc/Gcc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554870	106554870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	24	463	0	ENST00000369096.4:c.1987G>C	p.Val663Leu	p.V663L	ENST00000369096	NM_001198.3	663	Gtg/Ctg																																																																														
SESN1	27244	MSKCC	GRCh37	6	109309760	109309761	+	missense_variant	Missense_Mutation	DNP	TG	TG	CA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	20	621	0	ENST00000436639.2:c.1554_1555inv	p.Lys519Glu	p.K519E	ENST00000436639	NM_014454.2	518	ttCAag/ttTGag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001178	150001178	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	33	603	1	ENST00000253339.5:c.2426T>C	p.Ile809Thr	p.I809T	ENST00000253339		809	aTa/aCa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001196	150001196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	31	610	0	ENST00000253339.5:c.2408G>A	p.Ser803Asn	p.S803N	ENST00000253339		803	aGt/aAt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001209	150001210	+	missense_variant	Missense_Mutation	DNP	TG	TG	CA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	27	621	1	ENST00000253339.5:c.2394_2395inv	p.Ile799Val	p.I799V	ENST00000253339		798	ggCAtc/ggTGtc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023180	150023180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	18	616	0	ENST00000253339.5:c.83G>A	p.Arg28Gln	p.R28Q	ENST00000253339		28	cGg/cAg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099895	157099896	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	70	583	3	ENST00000346085.5:c.832_833delinsAA	p.Gly278Asn	p.G278N	ENST00000346085	NM_020732.3	278	GGc/AAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469876	157469886	+	missense_variant	Missense_Mutation	ONP	ATGTGGTGCTG	ATGTGGTGCTG	CTGCGGTACCA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	39	598	2	ENST00000346085.5:c.2670_2680delinsCTGCGGTACCA	p.Ala893_Val894delinsThrMet	p.A893_V894delinsTM	ENST00000346085	NM_020732.3	890	ccATGTGGTGCTGtg/ccCTGCGGTACCAtg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469923	157469923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	59	608	0	ENST00000346085.5:c.2717A>G	p.Asn906Ser	p.N906S	ENST00000346085	NM_020732.3	906	aAc/aGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469962	157469963	+	missense_variant	Missense_Mutation	DNP	GT	GT	AC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	47	500	2	ENST00000346085.5:c.2756_2757inv	p.Ser919Asn	p.S919N	ENST00000346085	NM_020732.3	919	aGT/aAC																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528161	157528162	+	missense_variant	Missense_Mutation	DNP	TG	TG	CA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	56	541	1	ENST00000346085.5:c.5886_5887inv	p.Ala1963Thr	p.A1963T	ENST00000346085	NM_020732.3	1962	gaTGcc/gaCAcc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528248	157528275	+	missense_variant	Missense_Mutation	ONP	ACCGCAGACCTATGAGAAAGAGGAGGAT	ACCGCAGACCTATGAGAAAGAGGAGGAT	GCCTCAGACTTACGAGAAGGAGGAAGAG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	95	506	2	ENST00000346085.5:c.5973_6000delinsGCCTCAGACTTACGAGAAGGAGGAAGAG	p.Asp2000Glu	p.D2000E	ENST00000346085	NM_020732.3	1991	gcACCGCAGACCTATGAGAAAGAGGAGGAT/gcGCCTCAGACTTACGAGAAGGAGGAAGAG																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528606	157528606	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	65	645	0	ENST00000346085.5:c.6331T>C	p.Phe2111Leu	p.F2111L	ENST00000346085	NM_020732.3	2111	Ttc/Ctc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528702	157528702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	56	494	3	ENST00000346085.5:c.6427G>A	p.Ala2143Thr	p.A2143T	ENST00000346085	NM_020732.3	2143	Gca/Aca																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739956	41739957	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	24	461	1	ENST00000242208.4:c.16_17delinsAA	p.Leu6Lys	p.L6K	ENST00000242208	NM_002192.2	6	CTg/AAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444232	50444233	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CA	CA	TG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	18	311	0	ENST00000331340.3:c.162_163inv	p.Ser55Gly	p.S55G	ENST00000331340	NM_006060.4	54	gcCAgt/gcTGgt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444239	50444239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	30	328	0	ENST00000331340.3:c.169G>A	p.Val57Ile	p.V57I	ENST00000331340	NM_006060.4	57	Gtt/Att																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444245	50444245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	31	334	1	ENST00000331340.3:c.175G>A	p.Val59Ile	p.V59I	ENST00000331340	NM_006060.4	59	Gta/Ata																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444340	50444340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	42	345	0	ENST00000331340.3:c.270G>C	p.Glu90Asp	p.E90D	ENST00000331340	NM_006060.4	90	gaG/gaC																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444360	50444380	+	missense_variant	Missense_Mutation	ONP	GGGACCAAGGCAGCTCGGCTT	GGGACCAAGGCAGCTCGGCTT	ATGGCCCAGGCAGCAAGGCTA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	22	421	4	ENST00000331340.3:c.290_310delinsATGGCCCAGGCAGCAAGGCTA	p.Arg97_Leu104delinsAsnGlyProGlySerLysAlaMet	p.R97_L104delinsNGPGSKAM	ENST00000331340	NM_006060.4	97	aGGGACCAAGGCAGCTCGGCTTtg/aATGGCCCAGGCAGCAAGGCTAtg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459449	50459449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	16	335	0	ENST00000331340.3:c.738C>G	p.His246Gln	p.H246Q	ENST00000331340	NM_006060.4	246	caC/caG																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459558	50459558	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	37	309	0	ENST00000331340.3:c.847C>G	p.Leu283Val	p.L283V	ENST00000331340	NM_006060.4	283	Ctt/Gtt																																																																														
HGF	3082	MSKCC	GRCh37	7	81381543	81381543	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	18	373	0	ENST00000222390.5:c.518A>G	p.Gln173Arg	p.Q173R	ENST00000222390	NM_000601.4	173	cAg/cGg																																																																														
CDK6	1021	MSKCC	GRCh37	7	92462490	92462490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	64	570	0	ENST00000265734.4:c.148G>A	p.Gly50Ser	p.G50S	ENST00000265734	NM_001259.6	50	Ggc/Agc																																																																														
SMO	6608	MSKCC	GRCh37	7	128845088	128845106	+	missense_variant	Missense_Mutation	ONP	AGTGCCCTTGGTTCGGACA	AGTGCCCTTGGTTCGGACA	GGCGCCGTTGGTGCGCACG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	40	723	6	ENST00000249373.3:c.582_600delinsGGCGCCGTTGGTGCGCACG	p.Val195Ala	p.V195A	ENST00000249373	NM_005631.4	194	gaAGTGCCCTTGGTTCGGACA/gaGGCGCCGTTGGTGCGCACG																																																																														
SMO	6608	MSKCC	GRCh37	7	128850255	128850255	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	39	677	0	ENST00000249373.3:c.1518C>G	p.Asp506Glu	p.D506E	ENST00000249373	NM_005631.4	506	gaC/gaG																																																																														
SMO	6608	MSKCC	GRCh37	7	128850328	128850328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	71	611	1	ENST00000249373.3:c.1591G>T	p.Ala531Ser	p.A531S	ENST00000249373	NM_005631.4	531	Gcc/Tcc																																																																														
SMO	6608	MSKCC	GRCh37	7	128850374	128850374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	55	415	0	ENST00000249373.3:c.1637G>A	p.Arg546Lys	p.R546K	ENST00000249373	NM_005631.4	546	aGg/aAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151842263	151842263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	18	418	2	ENST00000262189.6:c.14149G>A	p.Ala4717Thr	p.A4717T	ENST00000262189	NM_170606.2	4717	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845464	151845464	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	38	676	0	ENST00000262189.6:c.13548A>C	p.Leu4516Phe	p.L4516F	ENST00000262189	NM_170606.2	4516	ttA/ttC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845480	151845480	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	39	679	0	ENST00000262189.6:c.13532T>C	p.Ile4511Thr	p.I4511T	ENST00000262189	NM_170606.2	4511	aTt/aCt																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194823	29194823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	66	791	0	ENST00000240100.2:c.905G>A	p.Arg302Lys	p.R302K	ENST00000240100	NM_001394.6	302	aGg/aAg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38156992	38156993	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	33	664	0	ENST00000317025.8:c.2727_2728insCCT	p.Ser909_Ser910insPro	p.S909_S910insP	ENST00000317025	NM_023034.1	909	-/CCT																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38157079	38157079	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	45	662	0	ENST00000317025.8:c.2641A>C	p.Met881Leu	p.M881L	ENST00000317025	NM_023034.1	881	Atg/Ctg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38157103	38157103	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	40	523	0	ENST00000317025.8:c.2617A>G	p.Ile873Val	p.I873V	ENST00000317025	NM_023034.1	873	Ata/Gta																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205536	38205536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	26	686	0	ENST00000317025.8:c.154A>G	p.Thr52Ala	p.T52A	ENST00000317025	NM_023034.1	52	Act/Gct																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205580	38205580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	52	717	0	ENST00000317025.8:c.110A>G	p.Asn37Ser	p.N37S	ENST00000317025	NM_023034.1	37	aAc/aGc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205583	38205584	+	missense_variant	Missense_Mutation	DNP	TT	TT	GC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	52	727	1	ENST00000317025.8:c.106_107delinsGC	p.Asn36Ala	p.N36A	ENST00000317025	NM_023034.1	36	AAc/GCc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38277101	38277101	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	48	607	0	ENST00000425967.3:c.1327A>C	p.Met443Leu	p.M443L	ENST00000425967	NM_001174067.1	443	Atg/Ctg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38277110	38277110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	43	613	1	ENST00000425967.3:c.1318C>A	p.His440Asn	p.H440N	ENST00000425967	NM_001174067.1	440	Cac/Aac																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38277117	38277118	+	missense_variant	Missense_Mutation	DNP	AC	AC	TG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	33	634	2	ENST00000425967.3:c.1310_1311delinsCA	p.Ser437Thr	p.S437T	ENST00000425967	NM_001174067.1	437	aGT/aCA																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38277149	38277149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	45	656	2	ENST00000425967.3:c.1279G>A	p.Val427Ile	p.V427I	ENST00000425967	NM_001174067.1	427	Gtc/Atc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38277158	38277158	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	32	659	1	ENST00000425967.3:c.1270T>A	p.Ser424Thr	p.S424T	ENST00000425967	NM_001174067.1	424	Tcg/Acg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38277160	38277160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	34	663	0	ENST00000425967.3:c.1268G>T	p.Gly423Val	p.G423V	ENST00000425967	NM_001174067.1	423	gGg/gTg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371638	55371638	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	103	567	0	ENST00000297316.4:c.328A>T	p.Thr110Ser	p.T110S	ENST00000297316	NM_022454.3	110	Acg/Tcg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371762	55371762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	54	333	0	ENST00000297316.4:c.452T>C	p.Val151Ala	p.V151A	ENST00000297316	NM_022454.3	151	gTg/gCg																																																																														
LYN	4067	MSKCC	GRCh37	8	56854496	56854496	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	19	604	0	ENST00000519728.1:c.78T>A	p.Asn26Lys	p.N26K	ENST00000519728	NM_002350.3	26	aaT/aaA																																																																														
LYN	4067	MSKCC	GRCh37	8	56879398	56879399	+	missense_variant	Missense_Mutation	DNP	CT	CT	GC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	36	656	1	ENST00000519728.1:c.915_916delinsGC	p.Tyr306His	p.Y306H	ENST00000519728	NM_002350.3	305	ctCTac/ctGCac																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864715	68864715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	47	435	1	ENST00000288368.4:c.86G>A	p.Ser29Asn	p.S29N	ENST00000288368	NM_024870.2	29	aGc/aAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864724	68864725	+	missense_variant	Missense_Mutation	DNP	AG	AG	TC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	42	457	0	ENST00000288368.4:c.95_96delinsTC	p.Gln32Leu	p.Q32L	ENST00000288368	NM_024870.2	32	cAG/cTC																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942777	68942777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	27	530	0	ENST00000288368.4:c.589G>T	p.Val197Leu	p.V197L	ENST00000288368	NM_024870.2	197	Gtg/Ttg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499790	8499791	+	missense_variant	Missense_Mutation	DNP	AT	AT	CA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	48	588	0	ENST00000356435.5:c.2178_2179delinsTG	p.Ser727Ala	p.S727A	ENST00000356435		726	acATct/acTGct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500826	8500826	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	25	561	0	ENST00000356435.5:c.2056A>T	p.Thr686Ser	p.T686S	ENST00000356435		686	Act/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500871	8500871	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	22	561	0	ENST00000356435.5:c.2011A>C	p.Lys671Gln	p.K671Q	ENST00000356435		671	Aaa/Caa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500876	8500876	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	23	546	0	ENST00000356435.5:c.2006C>G	p.Thr669Ser	p.T669S	ENST00000356435		669	aCt/aGt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500951	8500951	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	27	480	0	ENST00000356435.5:c.1931A>C	p.Glu644Ala	p.E644A	ENST00000356435		644	gAa/gCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500971	8500971	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	26	430	0	ENST00000356435.5:c.1911A>C	p.Lys637Asn	p.K637N	ENST00000356435		637	aaA/aaC																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500991	8500991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	22	393	0	ENST00000356435.5:c.1891C>A	p.Gln631Lys	p.Q631K	ENST00000356435		631	Caa/Aaa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127916193	127916193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	23	509	3	ENST00000373547.4:c.451G>A	p.Val151Ile	p.V151I	ENST00000373547	NM_002721.4	151	Gta/Ata																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412276	139412276	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1445	86	686	0	ENST00000277541.6:c.1369G>C	p.Val457Leu	p.V457L	ENST00000277541	NM_017617.3	457	Gtc/Ctc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412312	139412312	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1319	75	632	0	ENST00000277541.6:c.1333A>T	p.Thr445Ser	p.T445S	ENST00000277541	NM_017617.3	445	Acg/Tcg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412336	139412336	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	62	601	0	ENST00000277541.6:c.1309G>C	p.Glu437Gln	p.E437Q	ENST00000277541	NM_017617.3	437	Gag/Cag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413104	139413104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1281	70	629	0	ENST00000277541.6:c.1038C>G	p.His346Gln	p.H346Q	ENST00000277541	NM_017617.3	346	caC/caG																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413116	139413134	+	missense_variant	Missense_Mutation	ONP	GGCGCTGGCACAGTCATCA	GGCGCTGGCACAGTCATCA	AGCCATGGCGCAGTCGTCG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1374	98	708	4	ENST00000277541.6:c.1008_1026delinsCGACGACTGCGCCATGGCT	p.Ser341Met	p.S341M	ENST00000277541	NM_017617.3	336	atTGATGACTGTGCCAGCGCC/atCGACGACTGCGCCATGGCT																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156734	20156734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	95	194	0	ENST00000379607.5:c.23G>A	p.Gly8Glu	p.G8E	ENST00000379607	NM_001412.3	8	gGa/gAa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923137	39923137	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	40	341	0	ENST00000378444.4:c.3571C>G	p.Leu1191Val	p.L1191V	ENST00000378444	NM_001123385.1	1191	Ctg/Gtg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923142	39923142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	39	342	0	ENST00000378444.4:c.3566G>A	p.Ser1189Asn	p.S1189N	ENST00000378444	NM_001123385.1	1189	aGt/aAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923149	39923150	+	missense_variant	Missense_Mutation	DNP	GT	GT	TG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	38	344	1	ENST00000378444.4:c.3558_3559delinsCA	p.His1187Asn	p.H1187N	ENST00000378444	NM_001123385.1	1186	ccACat/ccCAat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923153	39923153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	37	348	0	ENST00000378444.4:c.3555C>G	p.Asp1185Glu	p.D1185E	ENST00000378444	NM_001123385.1	1185	gaC/gaG																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732824	44732825	+	missense_variant	Missense_Mutation	DNP	TA	TA	CG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	79	262	0	ENST00000377967.4:c.27_28delinsCG	p.Thr10Ala	p.T10A	ENST00000377967	NM_021140.2	9	gcTAcc/gcCGcc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732894	44732894	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	37	222	0	ENST00000377967.4:c.97G>C	p.Glu33Gln	p.E33Q	ENST00000377967	NM_021140.2	33	Gag/Cag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732907	44732908	+	missense_variant	Missense_Mutation	DNP	CG	CG	AC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	24	255	0	ENST00000377967.4:c.110_111delinsAC	p.Ala37Asp	p.A37D	ENST00000377967	NM_021140.2	37	gCG/gAC																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732910	44732910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	24	256	0	ENST00000377967.4:c.113C>T	p.Ser38Phe	p.S38F	ENST00000377967	NM_021140.2	38	tCc/tTc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732912	44732912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	24	263	0	ENST00000377967.4:c.115C>G	p.Pro39Ala	p.P39A	ENST00000377967	NM_021140.2	39	Ccc/Gcc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44879878	44879878	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	46	280	0	ENST00000377967.4:c.467T>C	p.Val156Ala	p.V156A	ENST00000377967	NM_021140.2	156	gTg/gCg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918665	44918665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	55	292	0	ENST00000377967.4:c.1148G>A	p.Ser383Asn	p.S383N	ENST00000377967	NM_021140.2	383	aGt/aAt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922674	44922674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	23	170	0	ENST00000377967.4:c.1535C>A	p.Pro512Gln	p.P512Q	ENST00000377967	NM_021140.2	512	cCa/cAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922772	44922772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	40	230	0	ENST00000377967.4:c.1633C>G	p.Leu545Val	p.L545V	ENST00000377967	NM_021140.2	545	Ctt/Gtt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922794	44922795	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	27	234	1	ENST00000377967.4:c.1655_1656delinsAT	p.Ser552Asn	p.S552N	ENST00000377967	NM_021140.2	552	aGC/aAT																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922799	44922799	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	27	238	0	ENST00000377967.4:c.1660T>G	p.Ser554Ala	p.S554A	ENST00000377967	NM_021140.2	554	Tct/Gct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922806	44922806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	31	251	0	ENST00000377967.4:c.1667C>G	p.Pro556Arg	p.P556R	ENST00000377967	NM_021140.2	556	cCt/cGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922838	44922838	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	30	264	0	ENST00000377967.4:c.1699T>A	p.Leu567Met	p.L567M	ENST00000377967	NM_021140.2	567	Ttg/Atg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922856	44922868	+	missense_variant	Missense_Mutation	ONP	TCTGCAGGCCATG	TCTGCAGGCCATG	CCAGCAGGCCCCA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	34	258	2	ENST00000377967.4:c.1717_1729delinsCCAGCAGGCCCCA	p.Ser573_Val577delinsProAlaGlyProIle	p.S573_V577delinsPAGPI	ENST00000377967	NM_021140.2	573	TCTGCAGGCCATGtt/CCAGCAGGCCCCAtt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922883	44922883	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	48	260	0	ENST00000377967.4:c.1744T>G	p.Ser582Ala	p.S582A	ENST00000377967	NM_021140.2	582	Tca/Gca																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922895	44922895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	48	258	0	ENST00000377967.4:c.1756G>A	p.Gly586Arg	p.G586R	ENST00000377967	NM_021140.2	586	Gga/Aga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922938	44922938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	70	281	0	ENST00000377967.4:c.1799G>A	p.Gly600Glu	p.G600E	ENST00000377967	NM_021140.2	600	gGa/gAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922974	44922974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	83	311	0	ENST00000377967.4:c.1835G>A	p.Arg612Gln	p.R612Q	ENST00000377967	NM_021140.2	612	cGa/cAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922985	44922985	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	85	332	0	ENST00000377967.4:c.1846A>T	p.Thr616Ser	p.T616S	ENST00000377967	NM_021140.2	616	Act/Tct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928852	44928852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	54	234	0	ENST00000377967.4:c.1952C>T	p.Ser651Leu	p.S651L	ENST00000377967	NM_021140.2	651	tCg/tTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928914	44928914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	86	296	3	ENST00000377967.4:c.2014G>T	p.Ala672Ser	p.A672S	ENST00000377967	NM_021140.2	672	Gct/Tct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928920	44928920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	93	303	0	ENST00000377967.4:c.2020T>A	p.Ser674Thr	p.S674T	ENST00000377967	NM_021140.2	674	Tct/Act																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928949	44928950	+	missense_variant	Missense_Mutation	DNP	CA	CA	TG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	76	298	1	ENST00000377967.4:c.2049_2050inv	p.Thr684Ala	p.T684A	ENST00000377967	NM_021140.2	683	ccCAcc/ccTGcc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928953	44928954	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	76	301	0	ENST00000377967.4:c.2053_2054delinsAC	p.Leu685Thr	p.L685T	ENST00000377967	NM_021140.2	685	CTg/ACg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929071	44929071	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	63	256	0	ENST00000377967.4:c.2171T>C	p.Ile724Thr	p.I724T	ENST00000377967	NM_021140.2	724	aTa/aCa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929074	44929076	+	missense_variant	Missense_Mutation	ONP	TGA	TGA	CAG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	62	249	0	ENST00000377967.4:c.2174_2176delinsCAG	p.Leu725_Thr726delinsSerAla	p.L725_T726delinsSA	ENST00000377967	NM_021140.2	725	tTGAcg/tCAGcg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929099	44929100	+	missense_variant	Missense_Mutation	DNP	CA	CA	TT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	77	252	0	ENST00000377967.4:c.2199_2200delinsTT	p.Thr734Ser	p.T734S	ENST00000377967	NM_021140.2	733	caCAct/caTTct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929100	44929100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	77	250	0	ENST00000377967.4:c.2200A>T	p.Thr734Ser	p.T734S	ENST00000377967	NM_021140.2	734	Act/Tct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929127	44929127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	90	275	0	ENST00000377967.4:c.2227A>G	p.Ser743Gly	p.S743G	ENST00000377967	NM_021140.2	743	Agt/Ggt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929160	44929160	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	99	292	0	ENST00000377967.4:c.2260A>G	p.Met754Val	p.M754V	ENST00000377967	NM_021140.2	754	Atg/Gtg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929179	44929180	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	96	333	1	ENST00000377967.4:c.2279_2280delinsCT	p.Cys760Ser	p.C760S	ENST00000377967	NM_021140.2	760	tGC/tCT																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929336	44929336	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	28	317	0	ENST00000377967.4:c.2436T>G	p.Asp812Glu	p.D812E	ENST00000377967	NM_021140.2	812	gaT/gaG																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929343	44929343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	27	320	0	ENST00000377967.4:c.2443G>A	p.Val815Ile	p.V815I	ENST00000377967	NM_021140.2	815	Gtt/Att																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929404	44929404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	45	292	0	ENST00000377967.4:c.2504A>C	p.Gln835Pro	p.Q835P	ENST00000377967	NM_021140.2	835	cAg/cCg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929450	44929465	+	protein_altering_variant	In_Frame_Del	DEL	GCTACACACAATTAAT	GCTACACACAATTAAT	ACATACAGTTAAC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	41	301	1	ENST00000377967.4:c.2550_2565delinsACATACAGTTAAC	p.Leu851_Ile854delinsHisThrVal	p.L851_I854delinsHTV	ENST00000377967	NM_021140.2	850	ggGCTACACACAATTAAT/ggACATACAGTTAAC																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44936011	44936012	+	missense_variant	Missense_Mutation	DNP	AT	AT	GC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	45	318	0	ENST00000377967.4:c.2772_2773delinsGC	p.Ser925Pro	p.S925P	ENST00000377967	NM_021140.2	924	ccATct/ccGCct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44936015	44936015	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	47	319	0	ENST00000377967.4:c.2776T>C	p.Ser926Pro	p.S926P	ENST00000377967	NM_021140.2	926	Tca/Cca																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966728	44966728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	18	327	0	ENST00000377967.4:c.3952A>G	p.Ile1318Val	p.I1318V	ENST00000377967	NM_021140.2	1318	Ata/Gta																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969355	44969355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	14	235	0	ENST00000377967.4:c.4037A>G	p.Asn1346Ser	p.N1346S	ENST00000377967	NM_021140.2	1346	aAt/aGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969380	44969381	+	missense_variant	Missense_Mutation	DNP	CA	CA	TG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	12	254	1	ENST00000377967.4:c.4062_4063inv	p.Ile1355Val	p.I1355V	ENST00000377967	NM_021140.2	1354	taCAta/taTGta																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969410	44969423	+	missense_variant	Missense_Mutation	ONP	AACAAGCGGAAACT	AACAAGCGGAAACT	GATAAGCACGAACC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	12	305	2	ENST00000377967.4:c.4092_4105delinsGATAAGCACGAACC	p.Thr1365_Gly1367delinsIleSerThr	p.T1365_G1367delinsIST	ENST00000377967	NM_021140.2	1364	aaAACAAGCGGAAACTtg/aaGATAAGCACGAACCtg																																																																														
AR	367	MSKCC	GRCh37	X	66943595	66943596	+	missense_variant	Missense_Mutation	DNP	TT	TT	AC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	13	279	1	ENST00000374690.3:c.2675_2676delinsAC	p.Phe892Tyr	p.F892Y	ENST00000374690	NM_000044.3	892	tTT/tAC																																																																														
MED12	9968	MSKCC	GRCh37	X	70346936	70346936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	36	232	1	ENST00000374080.3:c.2803G>T	p.Ala935Ser	p.A935S	ENST00000374080		935	Gcc/Tcc																																																																														
ATRX	546	MSKCC	GRCh37	X	76763858	76763858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	43	333	0	ENST00000373344.5:c.7450C>G	p.Pro2484Ala	p.P2484A	ENST00000373344	NM_000489.3	2484	Cca/Gca																																																																														
ATRX	546	MSKCC	GRCh37	X	76763867	76763867	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	48	335	0	ENST00000373344.5:c.7441A>G	p.Ser2481Gly	p.S2481G	ENST00000373344	NM_000489.3	2481	Agc/Ggc																																																																														
ATRX	546	MSKCC	GRCh37	X	76763918	76763918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	39	296	0	ENST00000373344.5:c.7390G>T	p.Ala2464Ser	p.A2464S	ENST00000373344	NM_000489.3	2464	Gct/Tct																																																																														
ATRX	546	MSKCC	GRCh37	X	76763924	76763924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	37	295	0	ENST00000373344.5:c.7384C>T	p.Pro2462Ser	p.P2462S	ENST00000373344	NM_000489.3	2462	Cca/Tca																																																																														
ATRX	546	MSKCC	GRCh37	X	76764008	76764039	+	missense_variant	Missense_Mutation	ONP	CCAGTGTTGCTTGTTGATAAGTCATTTGTTGC	CCAGTGTTGCTTGTTGATAAGTCATTTGTTGC	TCATTGCTGTTTGCTGGTAAGACATGTGCTGT			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	11	366	2	ENST00000373344.5:c.7269_7300delinsACAGCACATGTCTTACCAGCAAACAGCAATGA	p.Gln2425_Gly2434delinsHisMetSerTyrGlnGlnThrAlaMetSer	p.Q2425_G2434delinsHMSYQQTAMS	ENST00000373344	NM_000489.3	2423	caGCAACAAATGACTTATCAACAAGCAACACTGGgt/caACAGCACATGTCTTACCAGCAAACAGCAATGAgt																																																																														
ATRX	546	MSKCC	GRCh37	X	76949418	76949418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	14	190	0	ENST00000373344.5:c.379A>G	p.Ile127Val	p.I127V	ENST00000373344	NM_000489.3	127	Att/Gtt																																																																														
BTK	695	MSKCC	GRCh37	X	100611152	100611152	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	52	294	0	ENST00000308731.7:c.1454A>T	p.Tyr485Phe	p.Y485F	ENST00000308731	NM_000061.2	485	tAc/tTc																																																																														
BTK	695	MSKCC	GRCh37	X	100611226	100611226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	20	262	0	ENST00000308731.7:c.1380G>C	p.Leu460Phe	p.L460F	ENST00000308731	NM_000061.2	460	ttG/ttC																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205020	123205020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	15	185	0	ENST00000218089.9:c.2380A>G	p.Ile794Val	p.I794V	ENST00000218089	NM_001042749.1	794	Att/Gtt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205022	123205022	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	15	236	0	ENST00000218089.9:c.2382T>G	p.Ile794Met	p.I794M	ENST00000218089	NM_001042749.1	794	atT/atG																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205050	123205050	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	14	306	0	ENST00000218089.9:c.2410T>A	p.Ser804Thr	p.S804T	ENST00000218089	NM_001042749.1	804	Tca/Aca																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38156995	38156995	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	34	667	0	ENST00000317025.8:c.2725T>C	p.Ser909Pro	p.S909P	ENST00000317025	NM_023034.1	909	Tct/Cct																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429376	78429377	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCC			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	37	526	0	ENST00000370768.2:c.1063_1065dup	p.Gly355dup	p.G355dup	ENST00000370768	NM_003902.3	355	-/GGA																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099887	157099888	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	66	566	0	ENST00000346085.5:c.824_825insC	p.Ala276GlyfsTer259	p.A276Gfs*259	ENST00000346085	NM_020732.3	275	ggg/ggCg																																																																														
BTK	695	MSKCC	GRCh37	X	100611116	100611117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	39	346	0	ENST00000308731.7:c.1489_1490insTG	p.Gln497LeufsTer4	p.Q497Lfs*4	ENST00000308731	NM_000061.2	497	cag/cTGag																																																																														
BTK	695	MSKCC	GRCh37	X	100611119	100611120	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	41	331	0	ENST00000308731.7:c.1486_1487del	p.Gln496AlafsTer11	p.Q496Afs*11	ENST00000308731	NM_000061.2	496	CAg/g																																																																														
STAG2	10735	MSKCC	GRCh37	X	123164874	123164876	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	11	161	0	ENST00000218089.9:c.190_192del	p.Pro64del	p.P64del	ENST00000218089	NM_001042749.1	63	CCT/-																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822048	72822050	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	21	311	0	ENST00000268489.5:c.10125_10127del	p.Ile3375_Gln3376delinsMet	p.I3375_Q3376delinsM	ENST00000268489	NM_006885.3	3375	atTCAg/atg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099869	157099884	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCCGCCGCCGCCGC	CCTCCGCCGCCGCCGC	-			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	62	530	0	ENST00000346085.5:c.807_822del	p.Ser270GlyfsTer94	p.S270Gfs*94	ENST00000346085	NM_020732.3	269	gCCTCCGCCGCCGCCGCc/gc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929450	44929452	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	41	299	0	ENST00000377967.4:c.2550_2552del	p.Leu851del	p.L851del	ENST00000377967	NM_021140.2	850	ggGCTa/gga																																																																														
EP300	2033	MSKCC	GRCh37	22	41574824	41574826	+	missense_variant	Missense_Mutation	ONP	ATT	ATT	GTG			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	69	662	0	ENST00000263253.7:c.7109_7111delinsGTG	p.Asn2370_Ser2371delinsSerAla	p.N2370_S2371delinsSA	ENST00000263253	NM_001429.3	2370	aATTca/aGTGca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992313	72992313	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	99	831	0	ENST00000268489.5:c.1732A>G	p.Arg578Gly	p.R578G	ENST00000268489	NM_006885.3	578	Agg/Ggg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3115013	3115013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	171	859	0	ENST00000078429.4:c.548G>A	p.Arg183His	p.R183H	ENST00000078429	NM_002067.2	183	cGc/cAc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441415	52441415	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0025509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	97	565	0	ENST00000460680.1:c.437G>C	p.Arg146Thr	p.R146T	ENST00000460680	NM_004656.3	146	aGg/aCg																																																																														
ERG	2078	MSKCC	GRCh37	21	39755531	39755531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	265	502	0	ENST00000288319.7:c.1234C>T	p.Pro412Ser	p.P412S	ENST00000288319	NM_182918.3	412	Ccc/Tcc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588210	69588210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	174	662	0	ENST00000168712.1:c.488C>T	p.Pro163Leu	p.P163L	ENST00000168712	NM_002007.2	163	cCc/cTc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125523671	125523673	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0025561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	134	544	0	ENST00000428830.2:c.1266_1268del	p.Asn422del	p.N422del	ENST00000428830	NM_001114121.2	422	AAT/-																																																																														
POLE	5426	MSKCC	GRCh37	12	133233757	133233759	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0025561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	417	625	0	ENST00000320574.5:c.3545_3547del	p.Lys1182del	p.K1182del	ENST00000320574	NM_006231.2	1182	aAGAtc/atc																																																																														
TET2	54790	MSKCC	GRCh37	4	106162523	106162523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	101	412	0	ENST00000380013.4:c.3437C>T	p.Pro1146Leu	p.P1146L	ENST00000380013	NM_001127208.2	1146	cCt/cTt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148526831	148526831	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	214	497	0	ENST00000320356.2:c.473A>T	p.His158Leu	p.H158L	ENST00000320356	NM_004456.4	158	cAc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	242	513	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	261	420	0				ENST00000310581	NM_198253.2																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	169	379	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	249	599	0	ENST00000269305.4:c.102dupC	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																														
WT1	7490	MSKCC	GRCh37	11	32421528	32421528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	316	651	1	ENST00000332351.3:c.1064G>A	p.Arg355Lys	p.R355K	ENST00000332351	NM_024426.4	355	aGa/aAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444311	50444311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	160	384	1	ENST00000331340.3:c.241G>A	p.Asp81Asn	p.D81N	ENST00000331340	NM_006060.4	81	Gat/Aat																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246021804	246021804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	248	629	0	ENST00000388985.4:c.1070C>T	p.Pro357Leu	p.P357L	ENST00000388985		357	cCa/cTa																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519956	66519956	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	150	471	0	ENST00000358598.2:c.439A>C	p.Ser147Arg	p.S147R	ENST00000358598	NM_212471.2	147	Agt/Cgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276608	15276608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	312	634	0	ENST00000263388.2:c.5657G>A	p.Gly1886Asp	p.G1886D	ENST00000263388	NM_000435.2	1886	gGt/gAt																																																																														
PAK7	0	MSKCC	GRCh37	20	9560959	9560959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	225	514	0	ENST00000353224.5:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000353224	NM_177990.2	275	Cag/Tag																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31368151	31368151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	265	574	1	ENST00000328111.2:c.22C>T	p.Leu8Phe	p.L8F	ENST00000328111	NM_006892.3	8	Ctc/Ttc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46267868	46267868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	303	626	2	ENST00000371998.3:c.2629C>T	p.Pro877Ser	p.P877S	ENST00000371998		877	Ccc/Tcc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713518	30713518	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	260	488	0	ENST00000359013.4:c.918T>A	p.Tyr306Ter	p.Y306*	ENST00000359013	NM_001024847.2	306	taT/taA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47147594	47147594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	199	375	0	ENST00000409792.3:c.4732G>A	p.Glu1578Lys	p.E1578K	ENST00000409792	NM_014159.6	1578	Gaa/Aaa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185195134	185195134	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	189	361	0	ENST00000265026.3:c.2451A>C	p.Glu817Asp	p.E817D	ENST00000265026	NM_004721.4	817	gaA/gaC																																																																														
BRAF	673	MSKCC	GRCh37	7	140494265	140494265	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	316	811	0	ENST00000288602.6:c.983C>T	p.Pro328Leu	p.P328L	ENST00000288602	NM_004333.4	328	cCc/cTc																																																																														
BTK	695	MSKCC	GRCh37	X	100611920	100611920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	260	308	0	ENST00000308731.7:c.1201G>A	p.Asp401Asn	p.D401N	ENST00000308731	NM_000061.2	401	Gac/Aac																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	210	629	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156738	2156738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	93	617	0	ENST00000434045.2:c.184G>A	p.Gly62Arg	p.G62R	ENST00000434045	NM_001127598.1	62	Ggg/Agg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77085401	77085401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	88	541	0	ENST00000356341.3:c.449C>T	p.Ala150Val	p.A150V	ENST00000356341	NM_002576.4	150	gCt/gTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012441	29012441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55974987		P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	102	578	0	ENST00000282397.4:c.430G>A	p.Glu144Lys	p.E144K	ENST00000282397	NM_002019.4	144	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777807	3777807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	138	845	1	ENST00000262367.5:c.7241C>T	p.Thr2414Ile	p.T2414I	ENST00000262367	NM_004380.2	2414	aCc/aTc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872927	136872927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	66	431	0	ENST00000241393.3:c.571C>T	p.Pro191Ser	p.P191S	ENST00000241393	NM_003467.2	191	Ccc/Tcc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543799	212543799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	102	457	0	ENST00000342788.4:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000342788	NM_005235.2	534	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566773	212566773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	60	426	0	ENST00000342788.4:c.1408C>T	p.His470Tyr	p.H470Y	ENST00000342788	NM_005235.2	470	Cat/Tat																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748126	41748126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	25	133	0	ENST00000226382.2:c.643G>A	p.Gly215Ser	p.G215S	ENST00000226382	NM_003924.3	215	Ggc/Agc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295230	1295230	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	30	215	1				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	42	250	0				ENST00000310581	NM_198253.2																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32188214	32188214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	94	612	0	ENST00000375023.3:c.1127C>T	p.Ser376Phe	p.S376F	ENST00000375023	NM_004557.3	376	tCt/tTt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513231	106513231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	57	339	0	ENST00000359195.3:c.2135G>A	p.Arg712Lys	p.R712K	ENST00000359195	NM_002649.2	712	aGg/aAg																																																																														
TEK	7010	MSKCC	GRCh37	9	27168534	27168534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	89	665	0	ENST00000380036.4:c.406G>A	p.Gly136Arg	p.G136R	ENST00000380036	NM_000459.3	136	Gga/Aga																																																																														
ABL1	25	MSKCC	GRCh37	9	133760907	133760907	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	110	790	0	ENST00000318560.5:c.3230T>G	p.Met1077Arg	p.M1077R	ENST00000318560	NM_005157.4	1077	aTg/aGg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781449	135781449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	87	453	1	ENST00000298552.3:c.1516C>T	p.Pro506Ser	p.P506S	ENST00000298552	NM_001162426.1	506	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	77	441	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	16	316	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	24	306	2	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579717	7579717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	63	542	1	ENST00000269305.4:c.79C>T	p.Pro27Ser	p.P27S	ENST00000269305	NM_001126112.2	27	Cct/Tct																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005419	29005419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55687105		P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	15	273	0	ENST00000282397.4:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000282397	NM_002019.4	281	cGa/cAa																																																																														
HRAS	3265	MSKCC	GRCh37	11	533467	533467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	106	594	0	ENST00000311189.7:c.436G>A	p.Ala146Thr	p.A146T	ENST00000311189		146	Gcc/Acc																																																																														
CBL	867	MSKCC	GRCh37	11	119149242	119149242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	34	433	1	ENST00000264033.4:c.1250C>T	p.Pro417Leu	p.P417L	ENST00000264033	NM_005188.3	417	cCt/cTt																																																																														
REL	5966	MSKCC	GRCh37	2	61118878	61118878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	43	285	0	ENST00000295025.8:c.71G>A	p.Arg24Lys	p.R24K	ENST00000295025	NM_002908.2	24	aGa/aAa																																																																														
CASP8	841	MSKCC	GRCh37	2	202123028	202123028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	99	396	2	ENST00000358485.4:c.74C>T	p.Pro25Leu	p.P25L	ENST00000358485	NM_001080125.1	25	cCc/cTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118359404	118359404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	18	327	1	ENST00000534358.1:c.4408C>T	p.Gln1470Ter	p.Q1470*	ENST00000534358	NM_005933.3	1470	Cag/Tag																																																																														
MPL	4352	MSKCC	GRCh37	1	43818322	43818322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	94	579	0	ENST00000372470.3:c.1787C>G	p.Pro596Arg	p.P596R	ENST00000372470	NM_005373.2	596	cCt/cGt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120479960	120479960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	45	432	0	ENST00000256646.2:c.3467A>G	p.Asn1156Ser	p.N1156S	ENST00000256646	NM_024408.3	1156	aAc/aGc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377330	118377330	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	69	267	0	ENST00000534358.1:c.10723C>T	p.Gln3575Ter	p.Q3575*	ENST00000534358	NM_005933.3	3575	Caa/Taa																																																																														
CBL	867	MSKCC	GRCh37	11	119148529	119148529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	13	383	0	ENST00000264033.4:c.1070C>T	p.Pro357Leu	p.P357L	ENST00000264033	NM_005188.3	357	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420193	49420193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	51	497	1	ENST00000301067.7:c.15556C>T	p.His5186Tyr	p.H5186Y	ENST00000301067	NM_003482.3	5186	Cac/Tac																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434167	121434167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	79	634	0	ENST00000257555.6:c.1058C>T	p.Pro353Leu	p.P353L	ENST00000257555		353	cCc/cTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3644596	3644596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	53	479	0	ENST00000294008.3:c.2018C>T	p.Ser673Phe	p.S673F	ENST00000294008	NM_032444.2	673	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29533368	29533368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	22	213	0	ENST00000358273.4:c.1373del	p.Pro458GlnfsTer15	p.P458Qfs*15	ENST00000358273	NM_001042492.2	457	caC/ca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221438	36221438	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	69	641	2	ENST00000222270.7:c.5198-1G>T		p.X1733_splice	ENST00000222270	NM_014727.1	1733																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46608782	46608783	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	94	619	0	ENST00000263734.3:c.2093_2094delinsTT	p.Ala698Val	p.A698V	ENST00000263734	NM_001430.4	698	gCC/gTT																																																																														
PAK7	0	MSKCC	GRCh37	20	9525084	9525084	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	42	476	0	ENST00000353224.5:c.1801A>T	p.Lys601Ter	p.K601*	ENST00000353224	NM_177990.2	601	Aaa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790078	40790078	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	33	386	0	ENST00000373198.4:c.2653C>T	p.Gln885Ter	p.Q885*	ENST00000373198	NM_133170.3	885	Caa/Taa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62293892	62293892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	107	696	0	ENST00000508582.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000508582		154	cCc/cTc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526781	31526781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	141	528	1	ENST00000344624.3:c.259C>T	p.Pro87Ser	p.P87S	ENST00000344624		87	Ccg/Tcg																																																																														
PARK2	0	MSKCC	GRCh37	6	161990389	161990389	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	27	359	0	ENST00000366898.1:c.931C>T	p.Gln311Ter	p.Q311*	ENST00000366898	NM_004562.2	311	Cag/Tag																																																																														
MET	4233	MSKCC	GRCh37	7	116339869	116339869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	22	351	0	ENST00000397752.3:c.731C>T	p.Ser244Phe	p.S244F	ENST00000397752	NM_000245.2	244	tCt/tTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069587	69069587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	27	452	0	ENST00000288368.4:c.4262G>A	p.Arg1421Lys	p.R1421K	ENST00000288368	NM_024870.2	1421	aGa/aAa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141545646	141545646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	116	613	1	ENST00000220592.5:c.2192C>T	p.Pro731Leu	p.P731L	ENST00000220592	NM_012154.3	731	cCa/cTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041599	47041599	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	79	541	0	ENST00000329236.7:c.1590G>A	p.Trp530Ter	p.W530*	ENST00000329236	NM_001204466.1	530	tgG/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0026314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	14	268	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0026314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	78	270	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
AXL	558	MSKCC	GRCh37	19	41737181	41737181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	17	340	0	ENST00000301178.4:c.761C>T	p.Pro254Leu	p.P254L	ENST00000301178	NM_021913.4	254	cCc/cTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55964962	55964962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	20	147	0	ENST00000263923.4:c.2275G>A	p.Glu759Lys	p.E759K	ENST00000263923	NM_002253.2	759	Gaa/Aaa																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805400	46805400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	26	483	0	ENST00000290295.7:c.556G>A	p.Gly186Arg	p.G186R	ENST00000290295	NM_006361.5	186	Gga/Aga																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2227102	2227102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	27	373	1	ENST00000398665.3:c.4582G>A	p.Gly1528Arg	p.G1528R	ENST00000398665	NM_032482.2	1528	Ggg/Agg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628335	187628335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	27	266	1	ENST00000441802.2:c.2647C>A	p.Leu883Met	p.L883M	ENST00000441802	NM_005245.3	883	Ctg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295217	1295217	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0026314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	12	200	0				ENST00000310581	NM_198253.2																																																																																
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	377	547	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	121	314	1	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	273	399	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467511	66467511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	139	286	0	ENST00000273854.3:c.758C>T	p.Ser253Phe	p.S253F	ENST00000273854	NM_004439.5	253	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0027076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	67	460	2				ENST00000310581	NM_198253.2																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53223853	53223853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	194	823	2	ENST00000375401.3:c.3506C>T	p.Ser1169Leu	p.S1169L	ENST00000375401	NM_004187.3	1169	tCg/tTg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933202	36933202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	165	697	0	ENST00000361632.4:c.1915C>T	p.Leu639Phe	p.L639F	ENST00000361632		639	Ctc/Ttc																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117690379	117690379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	135	475	0	ENST00000369458.3:c.750C>G	p.His250Gln	p.H250Q	ENST00000369458	NM_024626.3	250	caC/caG																																																																														
SYK	6850	MSKCC	GRCh37	9	93650836	93650837	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	111	432	1	ENST00000375746.1:c.1762_1763delinsAA	p.Gly588Lys	p.G588K	ENST00000375746	NM_001174167.1	588	GGa/AAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	246	601	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
MSH3	4437	MSKCC	GRCh37	5	80109515	80109515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	134	738	1	ENST00000265081.6:c.2768C>T	p.Pro923Leu	p.P923L	ENST00000265081	NM_002439.4	923	cCt/cTt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	167	516	1	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	231	463	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	567	631	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	233	383	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	456	465	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	456	465	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PGR	5241	MSKCC	GRCh37	11	100912815	100912815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	172	416	1	ENST00000325455.5:c.2507G>A	p.Arg836Gln	p.R836Q	ENST00000325455	NM_001202474.3	836	cGa/cAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	456	465	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641509	23641509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	266	637	2	ENST00000261584.4:c.1966C>T	p.Pro656Ser	p.P656S	ENST00000261584	NM_024675.3	656	Cca/Tca																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149512350	149512350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	440	535	0	ENST00000261799.4:c.1090G>A	p.Glu364Lys	p.E364K	ENST00000261799	NM_002609.3	364	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046410	69046410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	349	544	1	ENST00000288368.4:c.3883G>A	p.Glu1295Lys	p.E1295K	ENST00000288368	NM_024870.2	1295	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431198	49431198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	419	546	0	ENST00000301067.7:c.9941C>T	p.Ser3314Phe	p.S3314F	ENST00000301067	NM_003482.3	3314	tCc/tTc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651144	206651144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1870	455	682	2	ENST00000367120.3:c.754C>T	p.Arg252Trp	p.R252W	ENST00000367120	NM_014002.3	252	Cgg/Tgg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434553	110434553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	833	500	0	ENST00000375856.3:c.3848C>T	p.Ser1283Phe	p.S1283F	ENST00000375856	NM_003749.2	1283	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921533	178921533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	108	420	0	ENST00000263967.3:c.1015C>T	p.Leu339Phe	p.L339F	ENST00000263967	NM_006218.2	339	Ctt/Ttt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106207	27106207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	750	546	0	ENST00000324856.7:c.5818C>T	p.Pro1940Ser	p.P1940S	ENST00000324856	NM_006015.4	1940	Cca/Tca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653803	89653803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	99	475	0	ENST00000371953.3:c.101C>T	p.Ala34Val	p.A34V	ENST00000371953	NM_000314.4	34	gCt/gTt																																																																														
SUFU	51684	MSKCC	GRCh37	10	104264016	104264016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	633	506	1	ENST00000369902.3:c.107C>T	p.Ala36Val	p.A36V	ENST00000369902	NM_016169.3	36	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420888	49420888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	388	468	0	ENST00000301067.7:c.14861C>T	p.Ser4954Leu	p.S4954L	ENST00000301067	NM_003482.3	4954	tCa/tTa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438280	110438280	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	682	271	0	ENST00000375856.3:c.121A>T	p.Lys41Ter	p.K41*	ENST00000375856	NM_003749.2	41	Aag/Tag																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379844	17379844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	532	788	0	ENST00000359435.4:c.229C>T	p.Pro77Ser	p.P77S	ENST00000359435	NM_001033549.1	77	Ccg/Tcg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622567	158622567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	319	592	0	ENST00000263640.3:c.932C>T	p.Ser311Phe	p.S311F	ENST00000263640	NM_001105.4	311	tCc/tTc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461476	138461476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	215	533	0	ENST00000289153.2:c.545C>T	p.Pro182Leu	p.P182L	ENST00000289153	NM_006219.2	182	cCa/cTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539111	187539111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	210	491	0	ENST00000441802.2:c.8629C>T	p.His2877Tyr	p.H2877Y	ENST00000441802	NM_005245.3	2877	Cat/Tat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046431	69046431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	344	546	1	ENST00000288368.4:c.3904G>A	p.Glu1302Lys	p.E1302K	ENST00000288368	NM_024870.2	1302	Gaa/Aaa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028852	47028852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	386	654	0	ENST00000329236.7:c.156G>C	p.Glu52Asp	p.E52D	ENST00000329236	NM_001204466.1	52	gaG/gaC																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650258	48650258	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	360	608	0	ENST00000376670.3:c.228G>T	p.Gln76His	p.Q76H	ENST00000376670	NM_002049.3	76	caG/caT																																																																														
AR	367	MSKCC	GRCh37	X	66863238	66863238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	259	489	0	ENST00000374690.3:c.1757G>A	p.Arg586Lys	p.R586K	ENST00000374690	NM_000044.3	586	aGa/aAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76874374	76874374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	138	564	1	ENST00000373344.5:c.5348C>T	p.Pro1783Leu	p.P1783L	ENST00000373344	NM_000489.3	1783	cCa/cTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76907718	76907719	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	215	545	0	ENST00000373344.5:c.4442_4443delinsAA	p.Arg1481Gln	p.R1481Q	ENST00000373344	NM_000489.3	1481	cGG/cAA																																																																														
FAM58A	0	MSKCC	GRCh37	X	152857964	152857964	+	splice_region_variant,synonymous_variant	Splice_Region	SNP	C	C	T			P-0027603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	84	132	0	ENST00000406277.2:c.651G>A		p.X217_splice	ENST00000406277	NM_152274.4	217	caG/caA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	175	641	0				ENST00000310581	NM_198253.2																																																																																
NF1	4763	MSKCC	GRCh37	17	29528489	29528489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	323	631	1	ENST00000358273.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000358273	NM_001042492.2	416	Cga/Tga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966381	25966381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	279	888	0	ENST00000435504.4:c.2825C>T	p.Pro942Leu	p.P942L	ENST00000435504		942	cCa/cTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68999979	68999979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	203	697	1	ENST00000288368.4:c.2048C>T	p.Ser683Leu	p.S683L	ENST00000288368	NM_024870.2	683	tCa/tTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624284	89624284	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	203	542	0	ENST00000371953.3:c.58G>T	p.Gly20Ter	p.G20*	ENST00000371953	NM_000314.4	20	Gga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720822	89720823	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	111	413	0	ENST00000371953.3:c.975dup	p.Asp326Ter	p.D326*	ENST00000371953	NM_000314.4	325	ctt/cTtt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112590	115112590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	323	919	1	ENST00000257566.3:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000257566	NM_016569.3	384	Gag/Aag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727432	66727432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	207	471	1	ENST00000307102.5:c.148C>T	p.Leu50Phe	p.L50F	ENST00000307102	NM_002755.3	50	Ctt/Ttt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420327	88420327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	157	533	1	ENST00000360948.2:c.2359C>T	p.Arg787Cys	p.R787C	ENST00000360948	NM_001012338.2	787	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991478	72991478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	316	882	0	ENST00000268489.5:c.2567C>T	p.Pro856Leu	p.P856L	ENST00000268489	NM_006885.3	856	cCc/cTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212110	36212110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	245	662	1	ENST00000222270.7:c.1861C>T	p.Pro621Ser	p.P621S	ENST00000222270	NM_014727.1	621	Cct/Tct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216444	36216445	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	370	974	2	ENST00000222270.7:c.3707_3708delinsTT	p.Pro1236Leu	p.P1236L	ENST00000222270	NM_014727.1	1236	cCC/cTT																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538941	23538942	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	196	638	1	ENST00000380871.4:c.497_498delinsTT	p.Thr166Ile	p.T166I	ENST00000380871	NM_006167.3	166	aCC/aTT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486078	8486078	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	145	634	0	ENST00000356435.5:c.2739del	p.Pro914GlnfsTer66	p.P914Qfs*66	ENST00000356435		913	atT/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0027937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	193	472	1				ENST00000310581	NM_198253.2																																																																																
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	211	603	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156735	20156735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	193	192	0	ENST00000379607.5:c.22G>A	p.Gly8Arg	p.G8R	ENST00000379607	NM_001412.3	8	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0028078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	147	418	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0028078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	429	654	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0028078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	111	364	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935508	13935508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	155	327	0	ENST00000405192.2:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000405192	NM_001163147.1	450	Gaa/Aaa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390157	89390157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	117	384	0	ENST00000336596.2:c.906G>A	p.Met302Ile	p.M302I	ENST00000336596	NM_005233.5	302	atG/atA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210688	36210688	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0028078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	158	544	2	ENST00000222270.7:c.439C>T	p.Arg147Ter	p.R147*	ENST00000222270	NM_014727.1	147	Cga/Tga																																																																														
TET1	80312	MSKCC	GRCh37	10	70405099	70405100	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0028078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	198	574	1	ENST00000373644.4:c.2613_2614delinsGT	p.Pro872Ser	p.P872S	ENST00000373644	NM_030625.2	871	tcTCcc/tcGTcc																																																																														
POLE	5426	MSKCC	GRCh37	12	133226430	133226430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	148	534	0	ENST00000320574.5:c.3628C>T	p.Pro1210Ser	p.P1210S	ENST00000320574	NM_006231.2	1210	Cct/Tct																																																																														
FLT1	2321	MSKCC	GRCh37	13	28880909	28880909	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	149	406	2	ENST00000282397.4:c.3721G>A	p.Asp1241Asn	p.D1241N	ENST00000282397	NM_002019.4	1241	Gac/Aac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348784	89348784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	244	889	1	ENST00000301030.4:c.4166C>T	p.Ser1389Phe	p.S1389F	ENST00000301030	NM_001256183.1	1389	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584576	187584576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	178	502	1	ENST00000441802.2:c.3457C>T	p.Pro1153Ser	p.P1153S	ENST00000441802	NM_005245.3	1153	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	267	304	0				ENST00000310581	NM_198253.2																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66213909	66213909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	132	319	1	ENST00000273854.3:c.2521C>T	p.Pro841Ser	p.P841S	ENST00000273854	NM_004439.5	841	Cca/Tca																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	260	365	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29496908	29496908	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	192	242	0	ENST00000358273.4:c.480-1G>A		p.X160_splice	ENST00000358273	NM_001042492.2	160																																																																															
ATM	472	MSKCC	GRCh37	11	108236203	108236203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	223	493	1	ENST00000278616.4:c.9139C>T	p.Arg3047Ter	p.R3047*	ENST00000278616	NM_000051.3	3047	Cga/Tga																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348188	348188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	196	563	0	ENST00000262320.3:c.1318C>T	p.Pro440Ser	p.P440S	ENST00000262320	NM_003502.3	440	Ccc/Tcc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793483	18793483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	257	362	1	ENST00000266497.5:c.4180G>A	p.Glu1394Lys	p.E1394K	ENST00000266497		1394	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117714396	117714396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	271	441	0	ENST00000368508.3:c.1253C>T	p.Ser418Leu	p.S418L	ENST00000368508	NM_002944.2	418	tCa/tTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857020	9857020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	67	246	0	ENST00000330684.3:c.4381G>A	p.Glu1461Lys	p.E1461K	ENST00000330684	NM_001134407.1	1461	Gaa/Aaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189456474	189456474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	144	436	0	ENST00000264731.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000264731	NM_003722.4	79	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713470	40713470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	171	577	0	ENST00000373198.4:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000373198	NM_133170.3	1349	Cgt/Tgt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681030	37681030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	164	478	1	ENST00000447079.4:c.3199C>T	p.Arg1067Ter	p.R1067*	ENST00000447079	NM_015083.1	1067	Cga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120794	94120794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	353	505	2	ENST00000369303.4:c.257G>A	p.Arg86Gln	p.R86Q	ENST00000369303	NM_004440.3	86	cGg/cAg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961910	15961910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	185	263	0	ENST00000268712.3:c.5885C>T	p.Ser1962Phe	p.S1962F	ENST00000268712	NM_006311.3	1962	tCt/tTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933653	39933653	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200052076		P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	354	234	0	ENST00000378444.4:c.946C>T	p.Pro316Ser	p.P316S	ENST00000378444	NM_001123385.1	316	Ccc/Tcc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412196	63412196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	552	388	0	ENST00000330258.3:c.971C>T	p.Ser324Leu	p.S324L	ENST00000330258	NM_152424.3	324	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295230	1295230	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	268	311	0				ENST00000310581	NM_198253.2																																																																																
HGF	3082	MSKCC	GRCh37	7	81346551	81346551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	240	318	0	ENST00000222390.5:c.1402C>T	p.Arg468Cys	p.R468C	ENST00000222390	NM_000601.4	468	Cgt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29546098	29546098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	437	492	0	ENST00000358273.4:c.1603C>T	p.Gln535Ter	p.Q535*	ENST00000358273	NM_001042492.2	535	Cag/Tag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458579	120458579	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	197	550	0	ENST00000256646.2:c.6766C>G	p.Arg2256Gly	p.R2256G	ENST00000256646	NM_024408.3	2256	Cgc/Ggc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846344	156846345	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	200	575	1	ENST00000524377.1:c.1785_1786delinsAA	p.Asp596Asn	p.D596N	ENST00000524377	NM_002529.3	595	ggGGac/ggAAac																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246021816	246021816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	412	567	2	ENST00000388985.4:c.1058G>T	p.Arg353Leu	p.R353L	ENST00000388985		353	cGg/cTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18473905	18473905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	286	414	0	ENST00000266497.5:c.1147G>A	p.Asp383Asn	p.D383N	ENST00000266497		383	Gac/Aac																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691220	18691220	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	208	320	0	ENST00000266497.5:c.3331C>T	p.Gln1111Ter	p.Q1111*	ENST00000266497		1111	Caa/Taa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112370	115112370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	607	284	1	ENST00000257566.3:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000257566	NM_016569.3	457	cCg/cTg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416857	121416857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	1099	677	0	ENST00000257555.6:c.286G>A	p.Glu96Lys	p.E96K	ENST00000257555		96	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	42054441	42054441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	346	567	0	ENST00000219905.7:c.7625C>T	p.Pro2542Leu	p.P2542L	ENST00000219905	NM_001164273.1	2542	cCc/cTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88727460	88727460	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	357	487	0	ENST00000360948.2:c.319A>T	p.Lys107Ter	p.K107*	ENST00000360948	NM_001012338.2	107	Aag/Tag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59793321	59793321	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	334	420	0	ENST00000259008.2:c.2483C>G	p.Ala828Gly	p.A828G	ENST00000259008	NM_032043.2	828	gCc/gGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220091	36220102	+	inframe_deletion	In_Frame_Del	DEL	ACGAGTGGACAC	ACGAGTGGACAC	-			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	241	637	0	ENST00000222270.7:c.4814_4825del	p.Glu1605_His1608del	p.E1605_H1608del	ENST00000222270	NM_014727.1	1604	aACGAGTGGACACac/aac																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45864881	45864881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756071720		P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	524	705	0	ENST00000391945.4:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000391945	NM_000400.3	380	Cgg/Tgg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61711149	61711149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	411	625	1	ENST00000401558.2:c.2600C>T	p.Pro867Leu	p.P867L	ENST00000401558	NM_003400.3	867	cCa/cTa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561475	9561475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	332	472	0	ENST00000353224.5:c.307G>A	p.Glu103Lys	p.E103K	ENST00000353224	NM_177990.2	103	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713425	40713425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	368	606	2	ENST00000373198.4:c.4090G>A	p.Asp1364Asn	p.D1364N	ENST00000373198	NM_133170.3	1364	Gac/Aac																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434179	12434179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	390	482	1	ENST00000287820.6:c.547C>T	p.His183Tyr	p.H183Y	ENST00000287820	NM_015869.4	183	Cac/Tac																																																																														
ATR	545	MSKCC	GRCh37	3	142185204	142185204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	237	505	0	ENST00000350721.4:c.6859C>T	p.Pro2287Ser	p.P2287S	ENST00000350721	NM_001184.3	2287	Cct/Tct																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186506972	186506972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	153	310	0	ENST00000323963.5:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000323963		380	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55960972	55960972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	228	373	0	ENST00000263923.4:c.2968G>A	p.Glu990Lys	p.E990K	ENST00000263923	NM_002253.2	990	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534358	187534358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	202	533	0	ENST00000441802.2:c.9368C>T	p.Pro3123Leu	p.P3123L	ENST00000441802	NM_005245.3	3123	cCc/cTc																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158586	26158586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	535	428	1	ENST00000289316.2:c.189G>A	p.Met63Ile	p.M63I	ENST00000289316	NM_138720.2	63	atG/atA																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169976	32169976	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	442	599	0	ENST00000375023.3:c.3632G>A	p.Trp1211Ter	p.W1211*	ENST00000375023	NM_004557.3	1211	tGg/tAg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798168	32798168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	446	597	0	ENST00000374899.4:c.1511C>T	p.Pro504Leu	p.P504L	ENST00000374899	NM_018833.2	504	cCc/cTc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444402	50444402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	89	416	0	ENST00000331340.3:c.332G>A	p.Arg111Gln	p.R111Q	ENST00000331340	NM_006060.4	111	cGa/cAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444459	50444459	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	169	387	0	ENST00000331340.3:c.389A>C	p.Asn130Thr	p.N130T	ENST00000331340	NM_006060.4	130	aAt/aCt																																																																														
HGF	3082	MSKCC	GRCh37	7	81355286	81355286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	260	319	0	ENST00000222390.5:c.1088C>T	p.Pro363Leu	p.P363L	ENST00000222390	NM_000601.4	363	cCc/cTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878941	151878941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	319	500	0	ENST00000262189.6:c.6004G>A	p.Gly2002Arg	p.G2002R	ENST00000262189	NM_170606.2	2002	Gga/Aga																																																																														
JAK2	3717	MSKCC	GRCh37	9	5081726	5081727	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	TT	TT	GA			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	183	201	0	ENST00000381652.3:c.2436_2437delinsGA	p.Asp812_Tyr813delinsGluAsn	p.D812_Y813delinsEN	ENST00000381652	NM_004972.3	812	gaTTat/gaGAat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126384	5126384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	356	371	0	ENST00000381652.3:c.3229C>T	p.His1077Tyr	p.H1077Y	ENST00000381652	NM_004972.3	1077	Cat/Tat																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	289	733	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266711	198266711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0028514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	213	612	0	ENST00000335508.6:c.2221A>G	p.Lys741Glu	p.K741E	ENST00000335508	NM_012433.2	741	Aag/Gag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443587	52443605	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGTCGTAGATCTCCTCC	AAGGTCGTAGATCTCCTCC	-			P-0028514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	170	587	0	ENST00000460680.1:c.87_105del	p.Glu30ArgfsTer36	p.E30Rfs*36	ENST00000460680	NM_004656.3	29	gtGGAGGAGATCTACGACCTT/gt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584456	52584457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	22	519	0	ENST00000394830.3:c.4556dup	p.Trp1520ValfsTer76	p.W1520Vfs*76	ENST00000394830	NM_018313.4	1519	aag/aaAg																																																																														
ID3	3399	MSKCC	GRCh37	1	23885832	23885832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	62	433	0	ENST00000374561.5:c.86G>A	p.Gly29Glu	p.G29E	ENST00000374561	NM_002167.4	29	gGg/gAg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572008	64572008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	44	687	0	ENST00000337652.1:c.1646C>T	p.Pro549Leu	p.P549L	ENST00000337652	NM_130803.2	549	cCa/cTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435100	18435100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	40	456	0	ENST00000266497.5:c.85C>G	p.Gln29Glu	p.Q29E	ENST00000266497		29	Caa/Gaa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628742	21628742	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	21	429	0	ENST00000421138.2:c.966T>A	p.Phe322Leu	p.F322L	ENST00000421138		322	ttT/ttA																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856100	111856100	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	105	653	0	ENST00000341259.2:c.151G>T	p.Glu51Ter	p.E51*	ENST00000341259	NM_005475.2	51	Gag/Tag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114153	115114153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	92	627	1	ENST00000257566.3:c.1064C>T	p.Pro355Leu	p.P355L	ENST00000257566	NM_016569.3	355	cCa/cTa																																																																														
MSI1	4440	MSKCC	GRCh37	12	120789198	120789198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	71	573	2	ENST00000257552.2:c.739C>T	p.Arg247Cys	p.R247C	ENST00000257552	NM_002442.3	247	Cgt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133219908	133219908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	96	540	0	ENST00000320574.5:c.4453C>T	p.Arg1485Cys	p.R1485C	ENST00000320574	NM_006231.2	1485	Cgc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	42058216	42058218	+	missense_variant	Missense_Mutation	ONP	TTT	TTT	ATC			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	17	171	0	ENST00000219905.7:c.7936_7938delinsATC	p.Phe2646Ile	p.F2646I	ENST00000219905	NM_001164273.1	2646	TTT/ATC																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670427	88670427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	46	349	0	ENST00000360948.2:c.1259C>T	p.Thr420Ile	p.T420I	ENST00000360948	NM_001012338.2	420	aCt/aTt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877435	89877435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	48	703	0	ENST00000389301.3:c.328G>A	p.Gly110Ser	p.G110S	ENST00000389301	NM_000135.2	110	Ggt/Agt																																																																														
NF1	4763	MSKCC	GRCh37	17	29576033	29576033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	27	433	0	ENST00000358273.4:c.4006C>T	p.Gln1336Ter	p.Q1336*	ENST00000358273	NM_001042492.2	1336	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29585361	29585361	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	35	455	0	ENST00000358273.4:c.4174-1G>A		p.X1392_splice	ENST00000358273	NM_001042492.2	1392																																																																															
CDK12	51755	MSKCC	GRCh37	17	37627241	37627241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	26	535	0	ENST00000447079.4:c.1156C>T	p.Pro386Ser	p.P386S	ENST00000447079	NM_015083.1	386	Cct/Tct																																																																														
XPO1	7514	MSKCC	GRCh37	2	61717908	61717908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	33	363	1	ENST00000401558.2:c.1891C>T	p.His631Tyr	p.H631Y	ENST00000401558	NM_003400.3	631	Cat/Tat																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024905	31024905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	58	571	0	ENST00000375687.4:c.4390C>A	p.Pro1464Thr	p.P1464T	ENST00000375687	NM_015338.5	1464	Ccc/Acc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	26	320	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47147487	47147488	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CT	CT	TC			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	35	432	1	ENST00000409792.3:c.4838_4839delinsGA	p.Glu1613Gly	p.E1613G	ENST00000409792	NM_014159.6	1613	gAG/gGA																																																																														
TET2	54790	MSKCC	GRCh37	4	106156729	106156729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	35	397	1	ENST00000380013.4:c.1630C>T	p.Arg544Ter	p.R544*	ENST00000380013	NM_001127208.2	544	Cga/Tga																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143029290	143029290	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	34	325	0	ENST00000262992.4:c.2330T>C	p.Leu777Pro	p.L777P	ENST00000262992	NM_001101669.1	777	cTa/cCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	29	498	1				ENST00000310581	NM_198253.2																																																																																
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	55	426	0	ENST00000356142.4:c.85C>G	p.Pro29Ala	p.P29A	ENST00000356142	NM_018890.3	29	Cct/Gct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	32	293	0	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742058	145742058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	42	734	0	ENST00000428558.2:c.445C>T	p.Pro149Ser	p.P149S	ENST00000428558	NM_004260.3	149	Ccc/Tcc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	72	533	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442069	52442081	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTTGCACAAGA	GAGTTGCACAAGA	-			P-0028707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	66	570	0	ENST00000460680.1:c.268_280del	p.Ser90MetfsTer4	p.S90Mfs*4	ENST00000460680	NM_004656.3	90	TCTTGTGCAACTCat/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	198	362	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	337	549	1	ENST00000288602.6:c.1798_1799delGTinsAG	p.Val600Arg	p.V600R	ENST00000288602	NM_004333.4	600	GTg/AGg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346885	89346885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	132	315	0	ENST00000301030.4:c.6065C>T	p.Pro2022Leu	p.P2022L	ENST00000301030	NM_001256183.1	2022	cCt/cTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692920	89692921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	238	633	0	ENST00000371953.3:c.405dupA	p.Cys136MetfsTer44	p.C136Mfs*44	ENST00000371953	NM_000314.4	135	ata/atAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515213	106515213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	332	535	0	ENST00000359195.3:c.2356C>T	p.Pro786Ser	p.P786S	ENST00000359195	NM_002649.2	786	Cca/Tca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485307	8485307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	282	520	0	ENST00000356435.5:c.3073C>T	p.His1025Tyr	p.H1025Y	ENST00000356435		1025	Cat/Tat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272152	15272152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	341	641	0	ENST00000263388.2:c.6287C>T	p.Ser2096Leu	p.S2096L	ENST00000263388	NM_000435.2	2096	tCg/tTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940759	71940759	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	92	709	0	ENST00000298229.2:c.806C>G	p.Ser269Ter	p.S269*	ENST00000298229	NM_001567.3	269	tCa/tGa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942609	71942609	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	75	776	1	ENST00000298229.2:c.1565T>A	p.Ile522Asn	p.I522N	ENST00000298229	NM_001567.3	522	aTc/aAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425456	49425457	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	332	722	1	ENST00000301067.7:c.13031_13032delinsTT	p.Pro4344Leu	p.P4344L	ENST00000301067	NM_003482.3	4344	cCC/cTT																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924302	112924303	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAA			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	78	720	0	ENST00000351677.2:c.1249_1251dup	p.Gln417dup	p.Q417dup	ENST00000351677	NM_002834.3	417	-/CAA																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041180	29041180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	360	682	0	ENST00000282397.4:c.248G>A	p.Arg83Lys	p.R83K	ENST00000282397	NM_002019.4	83	aGa/aAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832575	72832575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	246	353	0	ENST00000268489.5:c.4006G>C	p.Ala1336Pro	p.A1336P	ENST00000268489	NM_006885.3	1336	Gca/Cca																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696372	47696372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	360	616	1	ENST00000347630.2:c.451C>T	p.Pro151Ser	p.P151S	ENST00000347630	NM_001007230.1	151	Cct/Tct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212293132	212293132	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	281	461	0	ENST00000342788.4:c.2719+1G>A		p.X907_splice	ENST00000342788	NM_005235.2	907																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568868	212568868	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	356	640	0	ENST00000342788.4:c.1250T>A	p.Phe417Tyr	p.F417Y	ENST00000342788	NM_005235.2	417	tTt/tAt																																																																														
KDR	3791	MSKCC	GRCh37	4	55968676	55968676	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	286	415	0	ENST00000263923.4:c.1988-1G>A		p.X663_splice	ENST00000263923	NM_002253.2	663																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143324209	143324209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	187	392	0	ENST00000262992.4:c.256-2A>G		p.X86_splice	ENST00000262992	NM_001101669.1	86																																																																															
FLT4	2324	MSKCC	GRCh37	5	180053120	180053120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	257	613	0	ENST00000261937.6:c.1249G>A	p.Val417Met	p.V417M	ENST00000261937	NM_182925.4	417	Gtg/Atg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942626	71942626	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	AC			P-0029475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	71	777	1	ENST00000298229.2:c.1582delinsAC	p.Ser528ThrfsTer24	p.S528Tfs*24	ENST00000298229	NM_001567.3	528	Tcc/ACcc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	324	622	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441478	52441527	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TACGGGGAAGAAAATAAGGCCGTATCAGAATAATTTCTCCTCAGGTAGGA	TACGGGGAAGAAAATAAGGCCGTATCAGAATAATTTCTCCTCAGGTAGGA	-			P-0030246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	124	364	0	ENST00000460680.1:c.376-51_376-2del		p.X126_splice	ENST00000460680	NM_004656.3	126																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52643755	52643758	+	frameshift_variant	Frame_Shift_Del	DEL	ATCA	ATCA	-			P-0030246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	313	558	0	ENST00000394830.3:c.2138_2141del	p.Met713ArgfsTer17	p.M713Rfs*17	ENST00000394830	NM_018313.4	713	aTGATg/ag																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074205	8074205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	108	512	0	ENST00000377482.5:c.454C>T	p.Pro152Ser	p.P152S	ENST00000377482	NM_018948.3	152	Cct/Tct																																																																														
MPL	4352	MSKCC	GRCh37	1	43804214	43804214	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	318	413	0	ENST00000372470.3:c.214G>A	p.Glu72Lys	p.E72K	ENST00000372470	NM_005373.2	72	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307172	65307172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	402	492	0	ENST00000342505.4:c.2516G>A	p.Arg839Gln	p.R839Q	ENST00000342505	NM_002227.2	839	cGa/cAa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	213	439	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458438	120458438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	340	592	0	ENST00000256646.2:c.6907C>T	p.Pro2303Ser	p.P2303S	ENST00000256646	NM_024408.3	2303	Ccc/Tcc																																																																														
PARP1	142	MSKCC	GRCh37	1	226567723	226567723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	404	564	1	ENST00000366794.5:c.1443G>A	p.Trp481Ter	p.W481*	ENST00000366794	NM_001618.3	481	tgG/tgA																																																																														
TET1	80312	MSKCC	GRCh37	10	70451473	70451473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	410	737	0	ENST00000373644.4:c.6313C>T	p.Pro2105Ser	p.P2105S	ENST00000373644	NM_030625.2	2105	Cct/Tct																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710619	114710619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	144	601	1	ENST00000543371.1:c.104C>T	p.Ser35Phe	p.S35F	ENST00000543371	NM_001198531.1	35	tCc/tTc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742452	17742452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	118	463	2	ENST00000250003.3:c.634G>A	p.Asp212Asn	p.D212N	ENST00000250003	NM_002478.4	212	Gac/Aac																																																																														
PGR	5241	MSKCC	GRCh37	11	100999087	100999087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	265	604	2	ENST00000325455.5:c.715G>A	p.Gly239Ser	p.G239S	ENST00000325455	NM_001202474.3	239	Ggc/Agc																																																																														
ATM	472	MSKCC	GRCh37	11	108154937	108154969	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATTTTTCTATTTTTAGATCTTGTTATAAGGTT	AATTTTTCTATTTTTAGATCTTGTTATAAGGTT	-			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	95	257	0	ENST00000278616.4:c.3747-17_3762del		p.X1249_splice	ENST00000278616	NM_000051.3	1249																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373167	118373167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	109	477	0	ENST00000534358.1:c.6560C>T	p.Ser2187Phe	p.S2187F	ENST00000534358	NM_005933.3	2187	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552663	18552663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	98	638	0	ENST00000266497.5:c.2074C>T	p.Pro692Ser	p.P692S	ENST00000266497		692	Cct/Tct																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641487	18641487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	97	564	0	ENST00000266497.5:c.2486C>T	p.Ser829Phe	p.S829F	ENST00000266497		829	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431618	49431618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	275	660	0	ENST00000301067.7:c.9521C>T	p.Ser3174Phe	p.S3174F	ENST00000301067	NM_003482.3	3174	tCt/tTt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865156	57865156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	205	774	0	ENST00000228682.2:c.2633G>A	p.Arg878Lys	p.R878K	ENST00000228682	NM_005269.2	878	aGg/aAg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856277	111856277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	48	47	0	ENST00000341259.2:c.328C>T	p.Pro110Ser	p.P110S	ENST00000341259	NM_005475.2	110	Ccc/Tcc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432191	121432191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	171	544	0	ENST00000257555.6:c.938C>T	p.Ser313Phe	p.S313F	ENST00000257555		313	tCc/tTc																																																																														
SETD8	0	MSKCC	GRCh37	12	123888165	123888165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	134	396	0	ENST00000330479.4:c.643G>A	p.Glu215Lys	p.E215K	ENST00000330479	NM_020382.3	215	Gaa/Aaa																																																																														
POLE	5426	MSKCC	GRCh37	12	133225647	133225648	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	306	611	0	ENST00000320574.5:c.4016_4017delinsTT	p.Thr1339Ile	p.T1339I	ENST00000320574	NM_006231.2	1339	aCC/aTT																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588668	28588668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	104	549	0	ENST00000241453.7:c.2780C>T	p.Ala927Val	p.A927V	ENST00000241453	NM_004119.2	927	gCt/gTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28626709	28626709	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	324	551	1	ENST00000241453.7:c.587G>A	p.Trp196Ter	p.W196*	ENST00000241453	NM_004119.2	196	tGg/tAg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041751	29041751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	86	383	1	ENST00000282397.4:c.68C>T	p.Ser23Phe	p.S23F	ENST00000282397	NM_002019.4	23	tCt/tTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32899288	32899288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	217	515	0	ENST00000380152.3:c.392C>T	p.Ser131Phe	p.S131F	ENST00000380152		131	tCc/tTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914707	32914707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	213	570	0	ENST00000380152.3:c.6215C>T	p.Ser2072Phe	p.S2072F	ENST00000380152		2072	tCc/tTc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134688	41134688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	84	456	0	ENST00000379561.5:c.940C>T	p.Arg314Cys	p.R314C	ENST00000379561	NM_002015.3	314	Cgc/Tgc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560489	95560489	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	105	508	0	ENST00000343455.3:c.5100T>G	p.Cys1700Trp	p.C1700W	ENST00000343455	NM_177438.2	1700	tgT/tgG																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40685731	40685731	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	313	692	0	ENST00000249776.8:c.884T>A	p.Leu295Ter	p.L295*	ENST00000249776	NM_033286.3	295	tTa/tAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42058361	42058361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	99	487	0	ENST00000219905.7:c.8081C>T	p.Ser2694Phe	p.S2694F	ENST00000219905	NM_001164273.1	2694	tCc/tTc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712784	43712784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	417	681	0	ENST00000382044.4:c.4400C>T	p.Ser1467Phe	p.S1467F	ENST00000382044	NM_001141980.1	1467	tCt/tTt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472540	88472540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	152	617	0	ENST00000360948.2:c.2015C>T	p.Ser672Phe	p.S672F	ENST00000360948	NM_001012338.2	672	tCc/tTc																																																																														
BLM	641	MSKCC	GRCh37	15	91306278	91306278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	108	511	0	ENST00000355112.3:c.1965G>T	p.Met655Ile	p.M655I	ENST00000355112	NM_000057.2	655	atG/atT																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640325	3640325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	216	774	0	ENST00000294008.3:c.3314C>T	p.Ser1105Phe	p.S1105F	ENST00000294008	NM_032444.2	1105	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858585	9858585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	209	572	0	ENST00000330684.3:c.2816G>A	p.Gly939Glu	p.G939E	ENST00000330684	NM_001134407.1	939	gGg/gAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916195	9916195	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	137	540	0	ENST00000330684.3:c.2094T>A	p.Tyr698Ter	p.Y698*	ENST00000330684	NM_001134407.1	698	taT/taA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943770	9943770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	98	543	0	ENST00000330684.3:c.1171C>T	p.Pro391Ser	p.P391S	ENST00000330684	NM_001134407.1	391	Ccc/Tcc																																																																														
CBFB	865	MSKCC	GRCh37	16	67132644	67132644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	228	675	0	ENST00000412916.2:c.527C>T	p.Ser176Phe	p.S176F	ENST00000412916		176	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993063	72993063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	197	788	1	ENST00000268489.5:c.982G>A	p.Gly328Arg	p.G328R	ENST00000268489	NM_006885.3	328	Ggg/Agg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942153	81942153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	314	576	0	ENST00000359376.3:c.1690C>T	p.Arg564Trp	p.R564W	ENST00000359376	NM_002661.3	564	Cgg/Tgg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11984783	11984783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	97	515	0	ENST00000353533.5:c.329G>A	p.Arg110Gln	p.R110Q	ENST00000353533	NM_003010.3	110	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29559101	29559101	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	78	117	0	ENST00000358273.4:c.3208C>T	p.Gln1070Ter	p.Q1070*	ENST00000358273	NM_001042492.2	1070	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29661898	29661898	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	114	595	0	ENST00000358273.4:c.5855G>A	p.Trp1952Ter	p.W1952*	ENST00000358273	NM_001042492.2	1952	tGg/tAg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40376862	40376862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	221	671	0	ENST00000293328.3:c.310G>A	p.Glu104Lys	p.E104K	ENST00000293328	NM_012448.3	104	Gag/Aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435465	56435465	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	375	656	0	ENST00000407977.2:c.1672T>C	p.Tyr558His	p.Y558H	ENST00000407977		558	Tac/Cac																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763256	59763256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	266	673	0	ENST00000259008.2:c.2846C>T	p.Pro949Leu	p.P949L	ENST00000259008	NM_032043.2	949	cCt/cTt																																																																														
CD79B	974	MSKCC	GRCh37	17	62007630	62007630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	368	636	0	ENST00000392795.3:c.237G>A	p.Trp79Ter	p.W79*	ENST00000392795	NM_001039933.1	79	tgG/tgA																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223138	5223139	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	177	643	2	ENST00000357368.4:c.2664_2665delinsTT	p.Arg889Cys	p.R889C	ENST00000357368	NM_002850.3	888	gaCCgc/gaTTgc																																																																														
INSR	3643	MSKCC	GRCh37	19	7117417	7117417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	117	519	0	ENST00000302850.5:c.3799G>A	p.Asp1267Asn	p.D1267N	ENST00000302850	NM_000208.2	1267	Gac/Aac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285120	15285120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	147	620	0	ENST00000263388.2:c.4495G>A	p.Asp1499Asn	p.D1499N	ENST00000263388	NM_000435.2	1499	Gat/Aat																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379868	17379868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	411	772	0	ENST00000359435.4:c.253C>T	p.Arg85Trp	p.R85W	ENST00000359435	NM_001033549.1	85	Cgg/Tgg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260070	19260070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	188	596	1	ENST00000162023.5:c.223C>T	p.Pro75Ser	p.P75S	ENST00000162023		75	Ccc/Tcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228148	36228148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	362	617	0	ENST00000222270.7:c.7534G>T	p.Ala2512Ser	p.A2512S	ENST00000222270	NM_014727.1	2512	Gca/Tca																																																																														
AXL	558	MSKCC	GRCh37	19	41727080	41727080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	373	631	0	ENST00000301178.4:c.338G>A	p.Gly113Glu	p.G113E	ENST00000301178	NM_021913.4	113	gGa/gAa																																																																														
AXL	558	MSKCC	GRCh37	19	41754689	41754689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	366	665	0	ENST00000301178.4:c.1675G>A	p.Asp559Asn	p.D559N	ENST00000301178	NM_021913.4	559	Gac/Aac																																																																														
CIC	23152	MSKCC	GRCh37	19	42796595	42796595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	139	558	0	ENST00000575354.2:c.3152C>T	p.Ala1051Val	p.A1051V	ENST00000575354	NM_015125.3	1051	gCc/gTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856357	45856358	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	343	695	0	ENST00000391945.4:c.1814_1815delinsTT	p.Ser605Phe	p.S605F	ENST00000391945	NM_000400.3	605	tCC/tTT																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910249	50910249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	139	562	0	ENST00000440232.2:c.1504G>A	p.Asp502Asn	p.D502N	ENST00000440232	NM_002691.3	502	Gac/Aac																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910288	50910288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	320	614	0	ENST00000440232.2:c.1543G>A	p.Asp515Asn	p.D515N	ENST00000440232	NM_002691.3	515	Gat/Aat																																																																														
MSH2	4436	MSKCC	GRCh37	2	47707861	47707861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	28	460	0	ENST00000233146.2:c.2485C>T	p.His829Tyr	p.H829Y	ENST00000233146	NM_000251.2	829	Cat/Tat																																																																														
ACVR1	90	MSKCC	GRCh37	2	158637104	158637104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	405	593	0	ENST00000263640.3:c.76C>T	p.Pro26Ser	p.P26S	ENST00000263640	NM_001105.4	26	Ccc/Tcc																																																																														
CASP8	841	MSKCC	GRCh37	2	202131271	202131271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	132	571	0	ENST00000358485.4:c.239C>T	p.Ser80Phe	p.S80F	ENST00000358485	NM_001080125.1	80	tCc/tTc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	214	354	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248617	212248617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	107	554	0	ENST00000342788.4:c.3650G>A	p.Gly1217Glu	p.G1217E	ENST00000342788	NM_005235.2	1217	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212522511	212522511	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	83	505	0	ENST00000342788.4:c.1914G>A	p.Trp638Ter	p.W638*	ENST00000342788	NM_005235.2	638	tgG/tgA																																																																														
INHA	3623	MSKCC	GRCh37	2	220439721	220439721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	554	654	0	ENST00000243786.2:c.574C>T	p.Pro192Ser	p.P192S	ENST00000243786	NM_002191.3	192	Ccc/Tcc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242800938	242800938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	184	666	1	ENST00000334409.5:c.53G>A	p.Gly18Asp	p.G18D	ENST00000334409	NM_005018.2	18	gGc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770629	40770629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	121	439	0	ENST00000373198.4:c.2753G>A	p.Gly918Glu	p.G918E	ENST00000373198	NM_133170.3	918	gGg/gAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827958	40827958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	140	572	1	ENST00000373198.4:c.2470G>T	p.Asp824Tyr	p.D824Y	ENST00000373198	NM_133170.3	824	Gac/Tac																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656977	45656977	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	136	694	0	ENST00000407780.3:c.179A>C	p.Lys60Thr	p.K60T	ENST00000407780	NM_001283052.1	60	aAa/aCa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715633	30715633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	83	393	0	ENST00000359013.4:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000359013	NM_001024847.2	456	Gaa/Aaa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468397	89468398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1467832547		P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	153	362	1	ENST00000336596.2:c.1938dup	p.Glu647ArgfsTer7	p.E647Rfs*7	ENST00000336596	NM_005233.5	644	tca/tcAa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205104	128205104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	311	665	0	ENST00000341105.2:c.337C>T	p.His113Tyr	p.H113Y	ENST00000341105	NM_032638.4	113	Cac/Tac																																																																														
ATR	545	MSKCC	GRCh37	3	142277609	142277609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	193	492	1	ENST00000350721.4:c.1742C>T	p.Ser581Leu	p.S581L	ENST00000350721	NM_001184.3	581	tCa/tTa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807180	1807180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	136	669	0	ENST00000260795.2:c.1511C>T	p.Thr504Ile	p.T504I	ENST00000260795		504	aCc/aTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808928	1808928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	158	670	0	ENST00000260795.2:c.2360C>T	p.Ser787Phe	p.S787F	ENST00000260795		787	tCc/tTc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902511	1902511	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	452	621	0	ENST00000382891.5:c.130T>G	p.Cys44Gly	p.C44G	ENST00000382891	NM_133335.3	44	Tgt/Ggt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750615	41750615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	214	519	0	ENST00000226382.2:c.13G>A	p.Glu5Lys	p.E5K	ENST00000226382	NM_003924.3	5	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55960968	55960968	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	205	432	0	ENST00000263923.4:c.2971+1G>A		p.X991_splice	ENST00000263923	NM_002253.2	991																																																																															
KDR	3791	MSKCC	GRCh37	4	55979555	55979555	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	358	670	0	ENST00000263923.4:c.892A>G	p.Thr298Ala	p.T298A	ENST00000263923	NM_002253.2	298	Acc/Gcc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156493	106156493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	266	530	0	ENST00000380013.4:c.1394C>T	p.Pro465Leu	p.P465L	ENST00000380013	NM_001127208.2	465	cCa/cTa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157401	106157401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	105	559	0	ENST00000380013.4:c.2302G>A	p.Asp768Asn	p.D768N	ENST00000380013	NM_001127208.2	768	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525056	187525056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	285	648	0	ENST00000441802.2:c.10624C>T	p.Pro3542Ser	p.P3542S	ENST00000441802	NM_005245.3	3542	Ccg/Tcg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542540	187542540	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	237	659	0	ENST00000441802.2:c.5200A>T	p.Thr1734Ser	p.T1734S	ENST00000441802	NM_005245.3	1734	Aca/Tca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629247	187629247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	346	716	0	ENST00000441802.2:c.1735C>T	p.Pro579Ser	p.P579S	ENST00000441802	NM_005245.3	579	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	84	350	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35875669	35875669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	112	471	2	ENST00000303115.3:c.856C>T	p.Leu286Phe	p.L286F	ENST00000303115	NM_002185.3	286	Ctt/Ttt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56174806	56174806	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	126	374	1	ENST00000399503.3:c.1966-1G>T		p.X656_splice	ENST00000399503	NM_005921.1	656																																																																															
PLK2	10769	MSKCC	GRCh37	5	57750426	57750426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	188	559	0	ENST00000274289.3:c.2042T>C	p.Leu681Ser	p.L681S	ENST00000274289	NM_006622.3	681	tTa/tCa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80063759	80063759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	74	476	0	ENST00000265081.6:c.1904C>T	p.Thr635Ile	p.T635I	ENST00000265081	NM_002439.4	635	aCc/aTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517792	176517793	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	129	695	0	ENST00000292408.4:c.402_403delinsAA	p.Asp135Asn	p.D135N	ENST00000292408	NM_213647.1	134	agGGac/agAAac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181943	32181943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	442	615	0	ENST00000375023.3:c.2111G>A	p.Gly704Glu	p.G704E	ENST00000375023	NM_004557.3	704	gGg/gAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188871	32188871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	197	649	0	ENST00000375023.3:c.683G>A	p.Gly228Asp	p.G228D	ENST00000375023	NM_004557.3	228	gGt/gAt																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140842	37140842	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	331	576	0	ENST00000373509.5:c.678G>A	p.Trp226Ter	p.W226*	ENST00000373509	NM_002648.3	226	tgG/tgA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964510	93964510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	66	435	1	ENST00000369303.4:c.2387G>A	p.Gly796Glu	p.G796E	ENST00000369303	NM_004440.3	796	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117630083	117630083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	74	410	0	ENST00000368508.3:c.6443G>A	p.Gly2148Glu	p.G2148E	ENST00000368508	NM_002944.2	2148	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631404	117631404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	255	467	1	ENST00000368508.3:c.6274T>A	p.Tyr2092Asn	p.Y2092N	ENST00000368508	NM_002944.2	2092	Tat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710875	117710875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140178288		P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	147	546	1	ENST00000368508.3:c.1397G>A	p.Arg466Gln	p.R466Q	ENST00000368508	NM_002944.2	466	cGa/cAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152420006	152420006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	388	597	0	ENST00000206249.3:c.1693C>T	p.Gln565Ter	p.Q565*	ENST00000206249	NM_000125.3	565	Caa/Taa																																																																														
PARK2	0	MSKCC	GRCh37	6	162683648	162683666	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGTCCACCCGAGTCAAG	GAGGTCCACCCGAGTCAAG	-			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	292	530	0	ENST00000366898.1:c.303_321del	p.Ser101ArgfsTer70	p.S101Rfs*70	ENST00000366898	NM_004562.2	101	agCTTGACTCGGGTGGACCTC/ag																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	192	581	0	ENST00000356142.4:c.85C>A	p.Pro29Thr	p.P29T	ENST00000356142	NM_018890.3	29	Cct/Act																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935653	13935653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	322	560	0	ENST00000405192.2:c.1203G>T	p.Met401Ile	p.M401I	ENST00000405192	NM_001163147.1	401	atG/atT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221771	55221771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	316	635	0	ENST00000275493.2:c.815C>T	p.Pro272Leu	p.P272L	ENST00000275493	NM_005228.3	272	cCc/cTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873848	151873848	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199939847		P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	117	584	0	ENST00000262189.6:c.8690C>T	p.Ser2897Phe	p.S2897F	ENST00000262189	NM_170606.2	2897	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68972963	68972963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	115	516	0	ENST00000288368.4:c.1288G>A	p.Glu430Lys	p.E430K	ENST00000288368	NM_024870.2	430	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031679	69031679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	225	527	1	ENST00000288368.4:c.3434C>T	p.Pro1145Leu	p.P1145L	ENST00000288368	NM_024870.2	1145	cCc/cTc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5123114	5123114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	95	484	0	ENST00000381652.3:c.3170C>T	p.Pro1057Leu	p.P1057L	ENST00000381652	NM_004972.3	1057	cCa/cTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8436605	8436605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201031030		P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	92	600	0	ENST00000356435.5:c.4073C>T	p.Ser1358Phe	p.S1358F	ENST00000356435		1358	tCc/tTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499707	8499707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	213	628	0	ENST00000356435.5:c.2262G>A	p.Met754Ile	p.M754I	ENST00000356435		754	atG/atA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507320	8507321	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	54	471	1	ENST00000356435.5:c.1657_1658delinsAT	p.Asp553Ile	p.D553I	ENST00000356435		553	GAt/ATt																																																																														
TEK	7010	MSKCC	GRCh37	9	27169486	27169486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	55	520	0	ENST00000380036.4:c.487C>T	p.His163Tyr	p.H163Y	ENST00000380036	NM_000459.3	163	Cat/Tat																																																																														
TEK	7010	MSKCC	GRCh37	9	27206766	27206766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	206	609	1	ENST00000380036.4:c.2551G>A	p.Asp851Asn	p.D851N	ENST00000380036	NM_000459.3	851	Gat/Aat																																																																														
TEK	7010	MSKCC	GRCh37	9	27209136	27209136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	106	629	0	ENST00000380036.4:c.2593G>A	p.Asp865Asn	p.D865N	ENST00000380036	NM_000459.3	865	Gat/Aat																																																																														
TEK	7010	MSKCC	GRCh37	9	27217711	27217711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	153	617	1	ENST00000380036.4:c.3017C>T	p.Ala1006Val	p.A1006V	ENST00000380036	NM_000459.3	1006	gCc/gTc																																																																														
SYK	6850	MSKCC	GRCh37	9	93641056	93641056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	57	484	0	ENST00000375746.1:c.1402G>A	p.Asp468Asn	p.D468N	ENST00000375746	NM_001174167.1	468	Gat/Aat																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915935	127915935	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	198	570	0	ENST00000373547.4:c.546T>G	p.Asn182Lys	p.N182K	ENST00000373547	NM_002721.4	182	aaT/aaG																																																																														
ABL1	25	MSKCC	GRCh37	9	133738198	133738198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	253	525	0	ENST00000318560.5:c.598C>T	p.His200Tyr	p.H200Y	ENST00000318560	NM_005157.4	200	Cat/Tat																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139566484	139566484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	90	684	0	ENST00000308874.7:c.743G>A	p.Gly248Asp	p.G248D	ENST00000308874		248	gGc/gAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933076	39933076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	205	369	0	ENST00000378444.4:c.1523C>T	p.Ser508Phe	p.S508F	ENST00000378444	NM_001123385.1	508	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224261	36224262	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0030290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	285	607	0	ENST00000222270.7:c.6811_6812delinsT	p.Pro2271CysfsTer54	p.P2271Cfs*54	ENST00000222270	NM_014727.1	2271	CCg/Tg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0030388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	98	446	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156740	20156740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	127	167	0	ENST00000379607.5:c.17G>A	p.Gly6Asp	p.G6D	ENST00000379607	NM_001412.3	6	gGt/gAt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	307	843	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118366991	118366991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	173	552	0	ENST00000534358.1:c.5573G>A	p.Arg1858Gln	p.R1858Q	ENST00000534358	NM_005933.3	1858	cGa/cAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	180	336	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	125	350	0				ENST00000310581	NM_198253.2																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149435604	149435604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	66	379	0	ENST00000286301.3:c.2539G>A	p.Glu847Lys	p.E847K	ENST00000286301	NM_005211.3	847	Gag/Aag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670708	134670708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	64	402	0	ENST00000398015.3:c.619C>T	p.Pro207Ser	p.P207S	ENST00000398015	NM_004441.4	207	Cca/Tca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686238	117686238	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	39	267	0	ENST00000368508.3:c.3103C>T	p.Arg1035Ter	p.R1035*	ENST00000368508	NM_002944.2	1035	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41566453	41566453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	105	319	0	ENST00000263253.7:c.4330G>A	p.Asp1444Asn	p.D1444N	ENST00000263253	NM_001429.3	1444	Gat/Aat																																																																														
RET	5979	MSKCC	GRCh37	10	43609111	43609111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	186	571	1	ENST00000355710.3:c.1867G>A	p.Glu623Lys	p.E623K	ENST00000355710	NM_020975.4	623	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716366	18716366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	102	354	0	ENST00000266497.5:c.3713C>T	p.Ser1238Leu	p.S1238L	ENST00000266497		1238	tCa/tTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644451	18644451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	48	390	0	ENST00000266497.5:c.2629C>T	p.Pro877Ser	p.P877S	ENST00000266497		877	Cct/Tct																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31486624	31486624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	106	378	0	ENST00000344624.3:c.1888C>T	p.His630Tyr	p.H630Y	ENST00000344624		630	Cat/Tat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156703	55156703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	101	301	0	ENST00000257290.5:c.3104G>A	p.Gly1035Asp	p.G1035D	ENST00000257290	NM_006206.4	1035	gGc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727072	40727072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	56	383	1	ENST00000373198.4:c.3892G>A	p.Asp1298Asn	p.D1298N	ENST00000373198	NM_133170.3	1298	Gac/Aac																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771499	112771499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	63	436	1	ENST00000369452.4:c.1672C>T	p.Pro558Ser	p.P558S	ENST00000369452	NM_007373.3	558	Cct/Tct																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871789	35871789	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	105	386	0	ENST00000216797.5:c.717T>G	p.Cys239Trp	p.C239W	ENST00000216797	NM_020529.2	239	tgT/tgG																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350794	15350794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	214	608	1	ENST00000263377.2:c.3209C>T	p.Ser1070Phe	p.S1070F	ENST00000263377	NM_058243.2	1070	tCc/tTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42793424	42793424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	51	357	0	ENST00000575354.2:c.1226C>T	p.Ala409Val	p.A409V	ENST00000575354	NM_015125.3	409	gCc/gTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855574	45855574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201392911		P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	103	504	0	ENST00000391945.4:c.2083C>T	p.Arg695Cys	p.R695C	ENST00000391945	NM_000400.3	695	Cgc/Tgc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249758	39249758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	44	355	0	ENST00000402219.2:c.1811G>A	p.Gly604Glu	p.G604E	ENST00000402219	NM_005633.3	604	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285165	212285165	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	50	243	0	ENST00000342788.4:c.3135+1G>A		p.X1045_splice	ENST00000342788	NM_005235.2	1045																																																																															
EP300	2033	MSKCC	GRCh37	22	41566445	41566445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	99	320	0	ENST00000263253.7:c.4322G>A	p.Ser1441Asn	p.S1441N	ENST00000263253	NM_001429.3	1441	aGt/aAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41566491	41566491	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1222	108	317	0	ENST00000263253.7:c.4368G>C	p.Lys1456Asn	p.K1456N	ENST00000263253	NM_001429.3	1456	aaG/aaC																																																																														
RAF1	5894	MSKCC	GRCh37	3	12650749	12650750	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	49	500	0	ENST00000251849.4:c.405_406delinsTT	p.Leu136Phe	p.L136F	ENST00000251849	NM_002880.3	135	ccCCtc/ccTTtc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508439	106508439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	79	138	0	ENST00000359195.3:c.433G>A	p.Glu145Lys	p.E145K	ENST00000359195	NM_002649.2	145	Gag/Aag																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964419	70964419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	34	327	0	ENST00000276594.2:c.1609C>T	p.Arg537Trp	p.R537W	ENST00000276594	NM_024504.3	537	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518429	8518429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	58	153	0	ENST00000356435.5:c.962C>T	p.Ala321Val	p.A321V	ENST00000356435		321	gCc/gTc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	275	531	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20159749	20159749	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	249	291	0	ENST00000379607.5:c.10A>T	p.Asn4Tyr	p.N4Y	ENST00000379607	NM_001412.3	4	Aat/Tat																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441188	52441188	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0030785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	111	268	0	ENST00000460680.1:c.580+2T>G		p.X194_splice	ENST00000460680	NM_004656.3	194																																																																															
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	283	690	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398303	25398304	+	missense_variant	Missense_Mutation	DNP	GT	GT	TA			P-0030834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	148	399	1	ENST00000256078.4:c.15_16delinsTA	p.Lys5_Leu6delinsAsnIle	p.K5_L6delinsNI	ENST00000256078	NM_033360.2	5	aaACtt/aaTAtt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975728	26975733	+	inframe_deletion	In_Frame_Del	DEL	CTCAGG	CTCAGG	-			P-0030834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	69	444	0	ENST00000381527.3:c.1236_1241del	p.Ser413_Gly414del	p.S413_G414del	ENST00000381527	NM_001260.1	412	acCTCAGGt/act																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643566	38643578	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAATGTTAGGG	GAAAATGTTAGGG	-			P-0030834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	116	551	1	ENST00000299084.4:c.1044_1056del	p.Gly350MetfsTer52	p.G350Mfs*52	ENST00000299084	NM_152594.2	346	GAAAATGTTAGGGga/ga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945641	38945641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	21	293	0	ENST00000357387.3:c.4585C>A	p.Leu1529Met	p.L1529M	ENST00000357387	NM_152756.3	1529	Ctg/Atg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486076	8486076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	108	499	2	ENST00000356435.5:c.2741C>A	p.Pro914Gln	p.P914Q	ENST00000356435		914	cCa/cAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658326	18658326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	204	373	0	ENST00000266497.5:c.3131C>T	p.Ser1044Leu	p.S1044L	ENST00000266497		1044	tCg/tTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	64	427	0	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131940657	131940657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	258	398	0	ENST00000265335.6:c.2684C>T	p.Ser895Phe	p.S895F	ENST00000265335		895	tCc/tTc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175874	24175874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	185	373	0	ENST00000263121.7:c.1102C>T	p.Gln368Ter	p.Q368*	ENST00000263121	NM_003073.3	368	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	90	62	0				ENST00000310581	NM_198253.2																																																																																
FANCA	2175	MSKCC	GRCh37	16	89877402	89877402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	359	498	1	ENST00000389301.3:c.361G>A	p.Val121Met	p.V121M	ENST00000389301	NM_000135.2	121	Gtg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132542	11132542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	288	458	0	ENST00000344626.4:c.2758G>A	p.Glu920Lys	p.E920K	ENST00000344626	NM_003072.3	920	Gag/Aag																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740467	58740467	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	175	433	2	ENST00000305921.3:c.1372C>T	p.Arg458Ter	p.R458*	ENST00000305921	NM_003620.3	458	Cga/Tga																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739881	145739881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	87	441	2	ENST00000428558.2:c.1649C>T	p.Ala550Val	p.A550V	ENST00000428558	NM_004260.3	550	gCg/gTg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201885	152201885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	174	396	0	ENST00000206249.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000206249	NM_000125.3	247	Gaa/Aaa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201966	102201966	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	49	225	0	ENST00000263464.3:c.1318G>T	p.Glu440Ter	p.E440*	ENST00000263464	NM_001165.4	440	Gaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133253151	133253151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	248	396	0	ENST00000320574.5:c.890C>T	p.Ser297Phe	p.S297F	ENST00000320574	NM_006231.2	297	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031678	69031678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	227	316	0	ENST00000288368.4:c.3433C>T	p.Pro1145Ser	p.P1145S	ENST00000288368	NM_024870.2	1145	Ccc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066711	94066711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	248	339	0	ENST00000369303.4:c.1048G>A	p.Glu350Lys	p.E350K	ENST00000369303	NM_004440.3	350	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1271283	1271283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	143	342	0	ENST00000310581.5:c.2419G>A	p.Asp807Asn	p.D807N	ENST00000310581	NM_198253.2	807	Gac/Aac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285182	212285182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	111	358	0	ENST00000342788.4:c.3119G>T	p.Arg1040Ile	p.R1040I	ENST00000342788	NM_005235.2	1040	aGa/aTa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45799087	45799087	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	159	440	0	ENST00000372115.3:c.304C>T	p.Arg102Trp	p.R102W	ENST00000372115	NM_001048171.1	102	Cgg/Tgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9560813	9560813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	128	335	0	ENST00000353224.5:c.969G>T	p.Glu323Asp	p.E323D	ENST00000353224	NM_177990.2	323	gaG/gaT																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948820	71948820	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	421	474	0	ENST00000298229.2:c.3532C>T	p.Gln1178Ter	p.Q1178*	ENST00000298229	NM_001567.3	1178	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434366	49434366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	195	501	0	ENST00000301067.7:c.7187G>A	p.Cys2396Tyr	p.C2396Y	ENST00000301067	NM_003482.3	2396	tGt/tAt																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811716	102811716	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	175	499	0	ENST00000307046.8:c.468T>A	p.His156Gln	p.H156Q	ENST00000307046	NM_001111285.1	156	caT/caA																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335654	73335654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	19	247	0	ENST00000377767.4:c.2517C>A	p.Phe839Leu	p.F839L	ENST00000377767	NM_014953.3	839	ttC/ttA																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093381	30093381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	120	419	0	ENST00000331968.5:c.1882C>T	p.Arg628Cys	p.R628C	ENST00000331968	NM_002742.2	628	Cgt/Tgt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713239	43713239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	192	508	0	ENST00000382044.4:c.4234C>T	p.Arg1412Trp	p.R1412W	ENST00000382044	NM_001141980.1	1412	Cgg/Tgg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3929909	3929909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	112	213	0	ENST00000262367.5:c.9G>T	p.Glu3Asp	p.E3D	ENST00000262367	NM_004380.2	3	gaG/gaT																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646537	23646537	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	160	426	0	ENST00000261584.4:c.1330A>C	p.Asn444His	p.N444H	ENST00000261584	NM_024675.3	444	Aat/Cat																																																																														
CDH1	999	MSKCC	GRCh37	16	68846060	68846060	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	489	451	0	ENST00000261769.5:c.1031T>G	p.Val344Gly	p.V344G	ENST00000261769	NM_004360.3	344	gTg/gGg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991469	72991469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	400	472	0	ENST00000268489.5:c.2576C>T	p.Ala859Val	p.A859V	ENST00000268489	NM_006885.3	859	gCc/gTc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120440	70120440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	270	545	2	ENST00000245479.2:c.1442C>T	p.Ala481Val	p.A481V	ENST00000245479	NM_000346.3	481	gCc/gTc																																																																														
AXL	558	MSKCC	GRCh37	19	41748880	41748880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	216	459	0	ENST00000301178.4:c.1405C>T	p.Leu469Phe	p.L469F	ENST00000301178	NM_021913.4	469	Ctc/Ttc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39237764	39237764	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	167	383	0	ENST00000402219.2:c.2471T>G	p.Met824Arg	p.M824R	ENST00000402219	NM_005633.3	824	aTg/aGg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047339	128047339	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	223	390	0	ENST00000285398.2:c.583C>T	p.Arg195Ter	p.R195*	ENST00000285398	NM_000122.1	195	Cga/Tga																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46255777	46255777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	190	391	1	ENST00000371998.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371998		130	cGa/cAa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940229	49940229	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	171	429	0	ENST00000296474.3:c.814G>T	p.Asp272Tyr	p.D272Y	ENST00000296474	NM_002447.2	272	Gat/Tat																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807394	1807394	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	71	299	0	ENST00000260795.2:c.1643G>T	p.Gly548Val	p.G548V	ENST00000260795		548	gGc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112177392	112177392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	26	318	0	ENST00000257430.4:c.6101C>A	p.Ser2034Tyr	p.S2034Y	ENST00000257430	NM_000038.5	2034	tCt/tAt																																																																														
MET	4233	MSKCC	GRCh37	7	116339875	116339875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	465	377	0	ENST00000397752.3:c.737C>T	p.Pro246Leu	p.P246L	ENST00000397752	NM_000245.2	246	cCc/cTc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44833957	44833957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	186	401	0	ENST00000377967.4:c.381G>C	p.Trp127Cys	p.W127C	ENST00000377967	NM_021140.2	127	tgG/tgC																																																																														
MED12	9968	MSKCC	GRCh37	X	70341421	70341421	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	33	455	0	ENST00000374080.3:c.856G>T	p.Glu286Ter	p.E286*	ENST00000374080		286	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938617	76938617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	176	450	0	ENST00000373344.5:c.2131C>T	p.Pro711Ser	p.P711S	ENST00000373344	NM_000489.3	711	Cct/Tct																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256527	115256530	+	missense_variant	Missense_Mutation	ONP	CTTG	CTTG	TTTT			P-0030903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	426	422	0	ENST00000369535.4:c.181_184delinsAAAA	p.Gln61_Glu62delinsLysLys	p.Q61_E62delinsKK	ENST00000369535	NM_002524.4	61	CAAGaa/AAAAaa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	194	544	2	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593607	55593615	+	inframe_deletion	In_Frame_Del	DEL	AGGTTGTTG	AGGTTGTTG	-			P-0030938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	425	592	0	ENST00000288135.5:c.1676_1684del	p.Val559_Glu561del	p.V559_E561del	ENST00000288135	NM_000222.2	558	aAGGTTGTTGag/aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453153	140453153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	451	525	0	ENST00000288602.6:c.1782T>A	p.Asp594Glu	p.D594E	ENST00000288602	NM_004333.4	594	gaT/gaA																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	153	532	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	144	365	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc																																																																														
KIT	3815	MSKCC	GRCh37	4	55594261	55594261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	191	380	0	ENST00000288135.5:c.1964A>C	p.Asn655Thr	p.N655T	ENST00000288135	NM_000222.2	655	aAt/aCt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981497	201981497	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	59	544	0	ENST00000359651.3:c.411T>A	p.Ser137Arg	p.S137R	ENST00000359651		137	agT/agA																																																																														
RECQL	5965	MSKCC	GRCh37	12	21623960	21623967	+	frameshift_variant	Frame_Shift_Del	DEL	GTTCAGAA	GTTCAGAA	-			P-0031475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	50	132	1	ENST00000421138.2:c.1733_1740del	p.Leu578GlnfsTer2	p.L578Qfs*2	ENST00000421138		578	cTTCTGAAC/c																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38591636	38591636	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	285	453	0	ENST00000299084.4:c.95T>A	p.Leu32Ter	p.L32*	ENST00000299084	NM_152594.2	32	tTa/tAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42040927	42040927	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	42	459	0	ENST00000219905.7:c.5305C>T	p.Gln1769Ter	p.Q1769*	ENST00000219905	NM_001164273.1	1769	Cag/Tag																																																																														
KIT	3815	MSKCC	GRCh37	4	55594233	55594233	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	181	377	0	ENST00000288135.5:c.1936T>A	p.Tyr646Asn	p.Y646N	ENST00000288135	NM_000222.2	646	Tac/Aac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181527	32181527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	51	543	0	ENST00000375023.3:c.2258G>T	p.Cys753Phe	p.C753F	ENST00000375023	NM_004557.3	753	tGc/tTc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	98	645	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911514	131911514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143802516		P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	75	519	0	ENST00000265335.6:c.259C>T	p.Arg87Cys	p.R87C	ENST00000265335		87	Cgt/Tgt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170021	32170021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	830	942	1	ENST00000375023.3:c.3587G>A	p.Gly1196Glu	p.G1196E	ENST00000375023	NM_004557.3	1196	gGa/gAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259388	89259388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	194	632	0	ENST00000336596.2:c.532G>A	p.Gly178Arg	p.G178R	ENST00000336596	NM_005233.5	178	Gga/Aga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	228	430	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	228	430	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528768	8528768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	168	404	0	ENST00000356435.5:c.364C>T	p.Pro122Ser	p.P122S	ENST00000356435		122	Ccc/Tcc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	275	555	0	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468158	50468158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	285	632	0	ENST00000331340.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331340	NM_006060.4	465	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	164	413	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42842607	42842607	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	326	782	1	ENST00000398585.3:c.1250G>A	p.Trp417Ter	p.W417*	ENST00000398585	NM_001135099.1	417	tGg/tAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453185	140453185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	57	319	0	ENST00000288602.6:c.1750C>T	p.Leu584Phe	p.L584F	ENST00000288602	NM_004333.4	584	Ctt/Ttt																																																																														
PARK2	0	MSKCC	GRCh37	6	162475188	162475188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	190	509	0	ENST00000366898.1:c.553G>A	p.Asp185Asn	p.D185N	ENST00000366898	NM_004562.2	185	Gat/Aat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488718	212488718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	394	633	0	ENST00000342788.4:c.2131C>T	p.Arg711Cys	p.R711C	ENST00000342788	NM_005235.2	711	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	228	430	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112623	115112623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	188	857	0	ENST00000257566.3:c.1117G>A	p.Gly373Ser	p.G373S	ENST00000257566	NM_016569.3	373	Ggt/Agt																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022962	33022962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	232	351	0	ENST00000300177.4:c.71G>A	p.Gly24Glu	p.G24E	ENST00000300177	NM_001191322.1	24	gGg/gAg																																																																														
PARK2	0	MSKCC	GRCh37	6	162394449	162394449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	77	354	0	ENST00000366898.1:c.619G>A	p.Glu207Lys	p.E207K	ENST00000366898	NM_004562.2	207	Gaa/Aaa																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	832	854	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431915	49431915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	420	908	1	ENST00000301067.7:c.9224C>T	p.Ser3075Leu	p.S3075L	ENST00000301067	NM_003482.3	3075	tCg/tTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485256	8485256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	143	497	0	ENST00000356435.5:c.3124G>A	p.Glu1042Lys	p.E1042K	ENST00000356435		1042	Gag/Aag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706859	117706859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	206	423	1	ENST00000368508.3:c.2291G>A	p.Gly764Glu	p.G764E	ENST00000368508	NM_002944.2	764	gGa/gAa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109319805	109319805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	46	627	1	ENST00000436639.2:c.883C>T	p.Pro295Ser	p.P295S	ENST00000436639	NM_014454.2	295	Cct/Tct																																																																														
NSD1	64324	MSKCC	GRCh37	5	176687106	176687106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	175	668	1	ENST00000439151.2:c.5083C>T	p.Pro1695Ser	p.P1695S	ENST00000439151	NM_022455.4	1695	Cct/Tct																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665110	138665110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	210	429	0	ENST00000330315.3:c.455C>T	p.Pro152Leu	p.P152L	ENST00000330315	NM_023067.3	152	cCc/cTc																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675097	40675097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	404	823	1	ENST00000249776.8:c.61G>A	p.Glu21Lys	p.E21K	ENST00000249776	NM_033286.3	21	Gag/Aag																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134857	41134857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	149	531	0	ENST00000379561.5:c.771G>A	p.Met257Ile	p.M257I	ENST00000379561	NM_002015.3	257	atG/atA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656292	18656292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	167	505	0	ENST00000266497.5:c.2971G>A	p.Glu991Lys	p.E991K	ENST00000266497		991	Gaa/Aaa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941007	71941007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	464	938	1	ENST00000298229.2:c.883C>T	p.Pro295Ser	p.P295S	ENST00000298229	NM_001567.3	295	Cca/Tca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484129	8484129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	188	560	0	ENST00000356435.5:c.3403G>A	p.Glu1135Lys	p.E1135K	ENST00000356435		1135	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	161	338	0				ENST00000310581	NM_198253.2																																																																																
PIK3C2G	5288	MSKCC	GRCh37	12	18466940	18466940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	149	461	0	ENST00000266497.5:c.1079C>T	p.Ser360Phe	p.S360F	ENST00000266497		360	tCt/tTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656232	18656232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	138	495	0	ENST00000266497.5:c.2911C>T	p.Pro971Ser	p.P971S	ENST00000266497		971	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431483	49431483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	403	814	0	ENST00000301067.7:c.9656C>T	p.Ala3219Val	p.A3219V	ENST00000301067	NM_003482.3	3219	gCt/gTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623551	28623551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	82	567	0	ENST00000241453.7:c.1006C>T	p.Pro336Ser	p.P336S	ENST00000241453	NM_004119.2	336	Ccc/Tcc																																																																														
CD276	80381	MSKCC	GRCh37	15	73994616	73994616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	439	1057	0	ENST00000318443.5:c.100C>T	p.Pro34Ser	p.P34S	ENST00000318443	NM_001024736.1	34	Cct/Tct																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81902892	81902892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	224	573	0	ENST00000359376.3:c.553G>A	p.Asp185Asn	p.D185N	ENST00000359376	NM_002661.3	185	Gat/Aat																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763497	59763497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	149	652	1	ENST00000259008.2:c.2605C>T	p.Gln869Ter	p.Q869*	ENST00000259008	NM_032043.2	869	Cag/Tag																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66520171	66520171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	245	634	1	ENST00000358598.2:c.455C>T	p.Ala152Val	p.A152V	ENST00000358598	NM_212471.2	152	gCc/gTc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56414901	56414902	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	158	737	0	ENST00000348428.3:c.2302_2303delinsTT	p.Pro768Leu	p.P768L	ENST00000348428	NM_006785.3	768	CCa/TTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302896	15302896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	453	1028	0	ENST00000263388.2:c.554G>A	p.Cys185Tyr	p.C185Y	ENST00000263388	NM_000435.2	185	tGt/tAt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095752	178095753	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AG			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	177	534	0	ENST00000397062.3:c.1578_1579delinsCT	p.Glu526_Gln527delinsAspTer	p.E526_Q527delinsD*	ENST00000397062	NM_006164.4	526	gaGCaa/gaCTaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288988	212288988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	145	602	0	ENST00000342788.4:c.2758C>T	p.Pro920Ser	p.P920S	ENST00000342788	NM_005235.2	920	Ccc/Tcc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755735	39755735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	300	631	0	ENST00000288319.7:c.1030C>A	p.Pro344Thr	p.P344T	ENST00000288319	NM_182918.3	344	Ccc/Acc																																																																														
TP63	8626	MSKCC	GRCh37	3	189604320	189604320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	239	441	1	ENST00000264731.3:c.1487C>T	p.Pro496Leu	p.P496L	ENST00000264731	NM_003722.4	496	cCt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112102045	112102045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	35	398	0	ENST00000257430.4:c.158G>A	p.Gly53Glu	p.G53E	ENST00000257430	NM_000038.5	53	gGa/gAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047257	180047257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	207	898	0	ENST00000261937.6:c.2458G>A	p.Gly820Arg	p.G820R	ENST00000261937	NM_182925.4	820	Ggg/Agg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052981	180052981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	403	1133	0	ENST00000261937.6:c.1309C>G	p.Arg437Gly	p.R437G	ENST00000261937	NM_182925.4	437	Cgt/Ggt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509918	106509918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	610	741	0	ENST00000359195.3:c.1912G>A	p.Glu638Lys	p.E638K	ENST00000359195	NM_002649.2	638	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002843	69002843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	151	330	0	ENST00000288368.4:c.2143C>T	p.Pro715Ser	p.P715S	ENST00000288368	NM_024870.2	715	Cct/Tct																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739839	145739839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	465	920	2	ENST00000428558.2:c.1691C>T	p.Ser564Phe	p.S564F	ENST00000428558	NM_004260.3	564	tCt/tTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499777	8499777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	331	720	0	ENST00000356435.5:c.2192C>T	p.Ser731Leu	p.S731L	ENST00000356435		731	tCa/tTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528711	8528711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	236	451	0	ENST00000356435.5:c.421C>G	p.Arg141Gly	p.R141G	ENST00000356435		141	Cgc/Ggc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200105	123200105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	86	350	0	ENST00000218089.9:c.2177C>T	p.Pro726Leu	p.P726L	ENST00000218089	NM_001042749.1	726	cCt/cTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	104	306	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561564	9561564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	63	465	0	ENST00000353224.5:c.218G>A	p.Gly73Glu	p.G73E	ENST00000353224	NM_177990.2	73	gGa/gAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857429	9857429	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	91	436	0	ENST00000330684.3:c.3972T>A	p.Phe1324Leu	p.F1324L	ENST00000330684	NM_001134407.1	1324	ttT/ttA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	51	347	0				ENST00000310581	NM_198253.2																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157521923	157521923	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	125	352	0	ENST00000346085.5:c.4195C>T	p.Gln1399Ter	p.Q1399*	ENST00000346085	NM_020732.3	1399	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097809	27097809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	118	248	0	ENST00000324856.7:c.3398C>T	p.Pro1133Leu	p.P1133L	ENST00000324856	NM_006015.4	1133	cCc/cTc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	256	555	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156830895	156830895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	210	429	0	ENST00000524377.1:c.169G>A	p.Asp57Asn	p.D57N	ENST00000524377	NM_002529.3	57	Gat/Aat																																																																														
RET	5979	MSKCC	GRCh37	10	43619168	43619168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	203	487	0	ENST00000355710.3:c.2851C>T	p.Pro951Ser	p.P951S	ENST00000355710	NM_020975.4	951	Ccc/Tcc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112598	115112598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	300	630	0	ENST00000257566.3:c.1142G>A	p.Ser381Asn	p.S381N	ENST00000257566	NM_016569.3	381	aGc/aAc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432143	121432143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	240	554	0	ENST00000257555.6:c.890C>T	p.Pro297Leu	p.P297L	ENST00000257555		297	cCt/cTt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437073	110437073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	50	65	0	ENST00000375856.3:c.1328C>T	p.Thr443Ile	p.T443I	ENST00000375856	NM_003749.2	443	aCc/aTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476402	88476402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	154	383	0	ENST00000360948.2:c.1730C>T	p.Pro577Leu	p.P577L	ENST00000360948	NM_001012338.2	577	cCc/cTc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56792538	56792538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	251	414	0	ENST00000308159.5:c.268C>T	p.Leu90Phe	p.L90F	ENST00000308159	NM_014669.4	90	Ctt/Ttt																																																																														
NF1	4763	MSKCC	GRCh37	17	29546026	29546026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	125	256	1	ENST00000358273.4:c.1531C>T	p.Pro511Ser	p.P511S	ENST00000358273	NM_001042492.2	511	Cca/Tca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290048	15290049	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	187	633	2	ENST00000263388.2:c.3505_3506delinsTT	p.Pro1169Leu	p.P1169L	ENST00000263388	NM_000435.2	1169	CCg/TTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222808	36222808	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	277	622	0	ENST00000222270.7:c.5438-1G>A		p.X1813_splice	ENST00000222270	NM_014727.1	1813																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	86	229	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495314	212495314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	83	307	0	ENST00000342788.4:c.1952C>T	p.Pro651Leu	p.P651L	ENST00000342788	NM_005235.2	651	cCc/cTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024207	31024207	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74638057		P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	187	401	0	ENST00000375687.4:c.3692C>T	p.Ser1231Phe	p.S1231F	ENST00000375687	NM_015338.5	1231	tCc/tTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106196318	106196318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	112	273	0	ENST00000380013.4:c.4651C>T	p.His1551Tyr	p.H1551Y	ENST00000380013	NM_001127208.2	1551	Cac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	106	254	0				ENST00000310581	NM_198253.2																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32190843	32190843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	296	622	0	ENST00000375023.3:c.94C>T	p.Pro32Ser	p.P32S	ENST00000375023	NM_004557.3	32	Cca/Tca																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967924	93967924	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	190	438	0	ENST00000369303.4:c.2003A>C	p.Lys668Thr	p.K668T	ENST00000369303	NM_004440.3	668	aAa/aCa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674156	117674156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	151	408	0	ENST00000368508.3:c.4318C>T	p.Pro1440Ser	p.P1440S	ENST00000368508	NM_002944.2	1440	Cca/Tca																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938546	44938546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	144	358	0	ENST00000377967.4:c.3094A>G	p.Ile1032Val	p.I1032V	ENST00000377967	NM_021140.2	1032	Att/Gtt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	55	292	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MGA	23269	MSKCC	GRCh37	15	42026723	42026723	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	73	361	0	ENST00000219905.7:c.3848del	p.Pro1283LeufsTer8	p.P1283Lfs*8	ENST00000219905	NM_001164273.1	1283	Cct/ct																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245547	153245547	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	52	254	0	ENST00000281708.4:c.1645-1G>T		p.X549_splice	ENST00000281708	NM_033632.3	549																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	116	114	0				ENST00000310581	NM_198253.2																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89468397	89468397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	95	194	0	ENST00000336596.2:c.1931C>T	p.Ser644Leu	p.S644L	ENST00000336596	NM_005233.5	644	tCa/tTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518026	187518026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	315	491	0	ENST00000441802.2:c.12668C>T	p.Pro4223Leu	p.P4223L	ENST00000441802	NM_005245.3	4223	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	409	316	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
WT1	7490	MSKCC	GRCh37	11	32421568	32421568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	371	510	1	ENST00000332351.3:c.1024G>A	p.Asp342Asn	p.D342N	ENST00000332351	NM_024426.4	342	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662652	117662652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	149	465	0	ENST00000368508.3:c.4813G>A	p.Glu1605Lys	p.E1605K	ENST00000368508	NM_002944.2	1605	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	525	735	1	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793483	18793483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	123	282	0	ENST00000266497.5:c.4180G>A	p.Glu1394Lys	p.E1394K	ENST00000266497		1394	Gaa/Aaa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729727	41729727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	273	449	0	ENST00000242208.4:c.802G>A	p.Glu268Lys	p.E268K	ENST00000242208	NM_002192.2	268	Gaa/Aaa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134988	41134988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	20	241	0	ENST00000379561.5:c.640C>T	p.Arg214Cys	p.R214C	ENST00000379561	NM_002015.3	214	Cgt/Tgt																																																																														
CIC	23152	MSKCC	GRCh37	19	42795006	42795006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	355	673	0	ENST00000575354.2:c.2086C>T	p.Arg696Trp	p.R696W	ENST00000575354	NM_015125.3	696	Cgg/Tgg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024254	31024254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146747814		P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	57	402	1	ENST00000375687.4:c.3739C>T	p.Arg1247Cys	p.R1247C	ENST00000375687	NM_015338.5	1247	Cgt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	379	387	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112440	115112440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	315	437	3	ENST00000257566.3:c.1300G>A	p.Asp434Asn	p.D434N	ENST00000257566	NM_016569.3	434	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713470	40713470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	188	572	2	ENST00000373198.4:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000373198	NM_133170.3	1349	Cgt/Tgt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680388	30680388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	173	520	1	ENST00000376406.3:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000376406	NM_014641.2	444	cGa/cAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189427	56189427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	376	516	0	ENST00000399503.3:c.4459C>T	p.Arg1487Cys	p.R1487C	ENST00000399503	NM_005921.1	1487	Cgt/Tgt																																																																														
MET	4233	MSKCC	GRCh37	7	116340072	116340072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	68	224	0	ENST00000397752.3:c.934G>A	p.Glu312Lys	p.E312K	ENST00000397752	NM_000245.2	312	Gaa/Aaa																																																																														
STK19	8859	MSKCC	GRCh37	6	31940120	31940120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	209	605	1	ENST00000375331.2:c.262G>A	p.Glu88Lys	p.E88K	ENST00000375331	NM_004197.1	88	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300200	15300200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	212	577	0	ENST00000263388.2:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000263388	NM_000435.2	359	cCc/cTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552876	106552876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	265	594	1	ENST00000369096.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000369096	NM_001198.3	281	Gat/Aat																																																																														
KDR	3791	MSKCC	GRCh37	4	55964962	55964962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	84	249	0	ENST00000263923.4:c.2275G>A	p.Glu759Lys	p.E759K	ENST00000263923	NM_002253.2	759	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730858	40730858	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200227405		P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	252	646	2	ENST00000373198.4:c.3677G>A	p.Arg1226Gln	p.R1226Q	ENST00000373198	NM_133170.3	1226	cGa/cAa																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99808247	99808247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	144	468	2	ENST00000280892.6:c.442C>T	p.Arg148Cys	p.R148C	ENST00000280892	NM_001130678.1	148	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521486	8521486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	296	570	0	ENST00000356435.5:c.752G>A	p.Gly251Glu	p.G251E	ENST00000356435		251	gGa/gAa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942079	71942079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139442327		P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	204	641	3	ENST00000298229.2:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000298229	NM_001567.3	448	tCg/tTg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528192	103528192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	79	281	0	ENST00000355739.4:c.3500C>T	p.Ser1167Phe	p.S1167F	ENST00000355739	NM_000123.3	1167	tCt/tTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092764	27092764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	114	437	0	ENST00000324856.7:c.2785C>T	p.Pro929Ser	p.P929S	ENST00000324856	NM_006015.4	929	Cct/Tct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100833	27100833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	136	382	0	ENST00000324856.7:c.4115C>T	p.Pro1372Leu	p.P1372L	ENST00000324856	NM_006015.4	1372	cCa/cTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106561	27106561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	202	572	1	ENST00000324856.7:c.6172G>A	p.Glu2058Lys	p.E2058K	ENST00000324856	NM_006015.4	2058	Gaa/Aaa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106071	8106072	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	106	387	1	ENST00000346208.3:c.891_892delinsTT	p.Arg298Trp	p.R298W	ENST00000346208		297	aaCCgg/aaTTgg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499713	18499713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	203	403	1	ENST00000266497.5:c.1568C>T	p.Ser523Phe	p.S523F	ENST00000266497		523	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444315	49444315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	460	629	0	ENST00000301067.7:c.3056C>T	p.Pro1019Leu	p.P1019L	ENST00000301067	NM_003482.3	1019	cCc/cTc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924427	112924428	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	210	314	0	ENST00000351677.2:c.1373_1374delinsTT	p.His458Leu	p.H458L	ENST00000351677	NM_002834.3	458	cAC/cTT																																																																														
POLE	5426	MSKCC	GRCh37	12	133218930	133218930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	391	676	3	ENST00000320574.5:c.5006C>T	p.Ser1669Phe	p.S1669F	ENST00000320574	NM_006231.2	1669	tCc/tTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589783	28589783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	127	428	2	ENST00000241453.7:c.2597C>T	p.Thr866Ile	p.T866I	ENST00000241453	NM_004119.2	866	aCc/aTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28931804	28931804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	136	349	0	ENST00000282397.4:c.2135G>A	p.Gly712Glu	p.G712E	ENST00000282397	NM_002019.4	712	gGa/gAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012471	29012471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	91	364	0	ENST00000282397.4:c.400C>G	p.Pro134Ala	p.P134A	ENST00000282397	NM_002019.4	134	Cct/Gct																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678598	88678598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	175	267	1	ENST00000360948.2:c.938C>T	p.Pro313Leu	p.P313L	ENST00000360948	NM_001012338.2	313	cCt/cTt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478095	99478095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	321	399	0	ENST00000268035.6:c.2999C>T	p.Thr1000Ile	p.T1000I	ENST00000268035	NM_000875.3	1000	aCc/aTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857952	9857952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	513	472	0	ENST00000330684.3:c.3449C>A	p.Pro1150His	p.P1150H	ENST00000330684	NM_001134407.1	1150	cCc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436145	56436145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	659	458	0	ENST00000407977.2:c.992C>T	p.Ser331Phe	p.S331F	ENST00000407977		331	tCt/tTt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59871088	59871088	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	253	289	0	ENST00000259008.2:c.1343G>A	p.Trp448Ter	p.W448*	ENST00000259008	NM_032043.2	448	tGg/tAg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226928	2226928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	109	210	0	ENST00000398665.3:c.4408C>T	p.Pro1470Ser	p.P1470S	ENST00000398665	NM_032482.2	1470	Ccg/Tcg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366209	15366209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	377	631	0	ENST00000263377.2:c.1946C>T	p.Pro649Leu	p.P649L	ENST00000263377	NM_058243.2	649	cCc/cTc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967261	25967261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	107	412	0	ENST00000435504.4:c.1945C>T	p.Pro649Ser	p.P649S	ENST00000435504		649	Cct/Tct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530085	212530085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	90	277	0	ENST00000342788.4:c.1834C>T	p.Arg612Trp	p.R612W	ENST00000342788	NM_005235.2	612	Cgg/Tgg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019175	31019175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	182	435	3	ENST00000375687.4:c.770C>T	p.Ser257Phe	p.S257F	ENST00000375687	NM_015338.5	257	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727073	40727073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	199	421	0	ENST00000373198.4:c.3891G>T	p.Met1297Ile	p.M1297I	ENST00000373198	NM_133170.3	1297	atG/atT																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72881599	72881599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	143	382	2	ENST00000325599.8:c.520C>T	p.Pro174Ser	p.P174S	ENST00000325599	NM_018130.2	174	Cca/Tca																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664504	138664504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	78	182	2	ENST00000330315.3:c.1061C>T	p.Ala354Val	p.A354V	ENST00000330315	NM_023067.3	354	gCc/gTc																																																																														
BCL6	604	MSKCC	GRCh37	3	187444542	187444542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	338	529	0	ENST00000232014.4:c.1685C>T	p.Ala562Val	p.A562V	ENST00000232014	NM_001130845.1	562	gCc/gTc																																																																														
BCL6	604	MSKCC	GRCh37	3	187446146	187446146	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	148	499	0	ENST00000232014.4:c.1540+2T>A		p.X514_splice	ENST00000232014	NM_001130845.1	514																																																																															
TERT	7015	MSKCC	GRCh37	5	1293456	1293457	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	149	591	2	ENST00000310581.5:c.1544_1545delinsAA	p.Arg515Gln	p.R515Q	ENST00000310581	NM_198253.2	515	cGG/cAA																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752341	57752341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	232	431	0	ENST00000274289.3:c.1232C>T	p.Pro411Leu	p.P411L	ENST00000274289	NM_006622.3	411	cCc/cTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149504315	149504315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	415	574	1	ENST00000261799.4:c.1887G>A	p.Met629Ile	p.M629I	ENST00000261799	NM_002609.3	629	atG/atA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710534	117710534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	34	164	0	ENST00000368508.3:c.1738C>T	p.Pro580Ser	p.P580S	ENST00000368508	NM_002944.2	580	Cct/Tct																																																																														
HGF	3082	MSKCC	GRCh37	7	81372765	81372765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	138	316	0	ENST00000222390.5:c.769G>A	p.Asp257Asn	p.D257N	ENST00000222390	NM_000601.4	257	Gat/Aat																																																																														
MET	4233	MSKCC	GRCh37	7	116397828	116397828	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	125	485	0	ENST00000397752.3:c.2102G>A	p.Ser701Asn	p.S701N	ENST00000397752	NM_000245.2	701	aGt/aAt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148514429	148514429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	128	427	0	ENST00000320356.2:c.1295C>T	p.Pro432Leu	p.P432L	ENST00000320356	NM_004456.4	432	cCt/cTt																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538756	23538756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	74	278	0	ENST00000380871.4:c.683G>A	p.Ser228Asn	p.S228N	ENST00000380871	NM_006167.3	228	aGc/aAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058530	69058530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	253	605	1	ENST00000288368.4:c.4174C>T	p.Pro1392Ser	p.P1392S	ENST00000288368	NM_024870.2	1392	Cct/Tct																																																																														
AGO2	27161	MSKCC	GRCh37	8	141561478	141561478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	103	432	0	ENST00000220592.5:c.1327C>T	p.His443Tyr	p.H443Y	ENST00000220592	NM_012154.3	443	Cac/Tac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471083	8471083	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	71	241	2	ENST00000356435.5:c.3416G>A	p.Gly1139Asp	p.G1139D	ENST00000356435		1139	gGt/gAt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342874	87342874	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	205	368	0	ENST00000277120.3:c.1159G>A	p.Gly387Ser	p.G387S	ENST00000277120		387	Ggt/Agt																																																																														
FANCC	2176	MSKCC	GRCh37	9	97934380	97934380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	130	287	0	ENST00000289081.3:c.395C>T	p.Ala132Val	p.A132V	ENST00000289081	NM_000136.2	132	gCt/gTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70356173	70356173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	523	366	1	ENST00000374080.3:c.5068C>T	p.Leu1690Phe	p.L1690F	ENST00000374080		1690	Ctt/Ttt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924427	112924427	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	210	314	0	ENST00000351677.2:c.1373A>T	p.His458Leu	p.H458L	ENST00000351677	NM_002834.3	458	cAc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	504	369	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145431	58145431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	144	338	0	ENST00000257904.6:c.70C>T	p.Arg24Cys	p.R24C	ENST00000257904	NM_000075.3	24	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579314	7579314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	128	441	0	ENST00000269305.4:c.373A>C	p.Thr125Pro	p.T125P	ENST00000269305	NM_001126112.2	125	Acg/Ccg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	131	396	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718234	117718234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	191	435	0	ENST00000368508.3:c.623C>T	p.Pro208Leu	p.P208L	ENST00000368508	NM_002944.2	208	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622236	117622236	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	195	478	0	ENST00000368508.3:c.6634C>T	p.Gln2212Ter	p.Q2212*	ENST00000368508	NM_002944.2	2212	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	95	282	0				ENST00000310581	NM_198253.2																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3779798	3779798	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	239	701	0	ENST00000262367.5:c.5250T>G	p.Asp1750Glu	p.D1750E	ENST00000262367	NM_004380.2	1750	gaT/gaG																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110165	8110165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	170	494	0	ENST00000585124.1:c.440G>A	p.Arg147Gln	p.R147Q	ENST00000585124	NM_004217.3	147	cGg/cAg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37672024	37672024	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	217	547	1	ENST00000447079.4:c.2809C>T	p.Gln937Ter	p.Q937*	ENST00000447079	NM_015083.1	937	Caa/Taa																																																																														
BCL6	604	MSKCC	GRCh37	3	187447202	187447202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	171	578	1	ENST00000232014.4:c.991C>T	p.Pro331Ser	p.P331S	ENST00000232014	NM_001130845.1	331	Cca/Tca																																																																														
APC	324	MSKCC	GRCh37	5	112179204	112179204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	89	311	0	ENST00000257430.4:c.7913C>T	p.Ala2638Val	p.A2638V	ENST00000257430	NM_000038.5	2638	gCt/gTt																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197114	26197114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	167	460	0	ENST00000356476.2:c.365C>T	p.Pro122Leu	p.P122L	ENST00000356476		122	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971126	21971128	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	AA			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	152	319	1	ENST00000304494.5:c.230_232delinsTT	p.Thr77IlefsTer69	p.T77Ifs*69	ENST00000304494	NM_000077.4	77	aCTCtc/aTTtc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971126	21971128	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	AA			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	152	319	1	ENST00000304494.5:c.230_232delinsTT	p.Thr77IlefsTer69	p.T77Ifs*69	ENST00000304494	NM_000077.4	77	aCTCtc/aTTtc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971126	21971128	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	AA			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	152	319	1	ENST00000304494.5:c.230_232delinsTT	p.Thr77IlefsTer69	p.T77Ifs*69	ENST00000304494	NM_000077.4	77	aCTCtc/aTTtc																																																																														
ATRX	546	MSKCC	GRCh37	X	76855211	76855211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	186	560	0	ENST00000373344.5:c.5776G>A	p.Asp1926Asn	p.D1926N	ENST00000373344	NM_000489.3	1926	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087568	27087570	+	stop_gained	Nonsense_Mutation	ONP	CTC	CTC	TTA			P-0033199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	204	578	0	ENST00000324856.7:c.2142_2144delinsTTA	p.Ser715Ter	p.S715*	ENST00000324856	NM_006015.4	714	ctCTCg/ctTTAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	203	787	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593613	55593613	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	793	417	0	ENST00000288135.5:c.1679T>A	p.Val560Asp	p.V560D	ENST00000288135	NM_000222.2	560	gTt/gAt																																																																														
HGF	3082	MSKCC	GRCh37	7	81359066	81359066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	122	572	0	ENST00000222390.5:c.895C>T	p.Pro299Ser	p.P299S	ENST00000222390	NM_000601.4	299	Cct/Tct																																																																														
AXL	558	MSKCC	GRCh37	19	41727151	41727151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	109	839	1	ENST00000301178.4:c.409G>A	p.Gly137Ser	p.G137S	ENST00000301178	NM_021913.4	137	Ggc/Agc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46205332	46205332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	36	405	0	ENST00000334344.6:c.416C>T	p.Ser139Leu	p.S139L	ENST00000334344	NM_152641.2	139	tCg/tTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231742	66231742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	32	559	0	ENST00000273854.3:c.1958C>T	p.Pro653Leu	p.P653L	ENST00000273854	NM_004439.5	653	cCa/cTa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100388	8100388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	98	1112	0	ENST00000346208.3:c.362C>T	p.Ser121Phe	p.S121F	ENST00000346208		121	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	172	698	7				ENST00000310581	NM_198253.2																																																																																
PAK7	0	MSKCC	GRCh37	20	9561520	9561520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	130	718	0	ENST00000353224.5:c.262G>A	p.Asp88Asn	p.D88N	ENST00000353224	NM_177990.2	88	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971093	21971094	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	440	768	1	ENST00000304494.5:c.264_265delinsAA	p.Gly89Ser	p.G89S	ENST00000304494	NM_000077.4	88	gaGGgc/gaAAgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971093	21971094	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	440	768	1	ENST00000304494.5:c.264_265delinsAA	p.Gly89Ser	p.G89S	ENST00000304494	NM_000077.4	88	gaGGgc/gaAAgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971093	21971094	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	440	768	1	ENST00000304494.5:c.264_265delinsAA	p.Gly89Ser	p.G89S	ENST00000304494	NM_000077.4	88	gaGGgc/gaAAgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256666	16256666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	76	523	0	ENST00000375759.3:c.3931C>T	p.Pro1311Ser	p.P1311S	ENST00000375759	NM_015001.2	1311	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743942	40743942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	71	598	0	ENST00000373198.4:c.3053G>A	p.Arg1018Gln	p.R1018Q	ENST00000373198	NM_133170.3	1018	cGa/cAa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554099	63554099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	137	842	0	ENST00000307078.5:c.640G>A	p.Gly214Arg	p.G214R	ENST00000307078	NM_004655.3	214	Gga/Aga																																																																														
TET2	54790	MSKCC	GRCh37	4	106157539	106157539	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192553789		P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	40	286	0	ENST00000380013.4:c.2440C>T	p.Arg814Cys	p.R814C	ENST00000380013	NM_001127208.2	814	Cgt/Tgt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527934	157527934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	47	586	0	ENST00000346085.5:c.5659G>A	p.Ala1887Thr	p.A1887T	ENST00000346085	NM_020732.3	1887	Gca/Aca																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	183	1063	2	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508561	106508561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	114	330	0	ENST00000359195.3:c.555G>A	p.Met185Ile	p.M185I	ENST00000359195	NM_002649.2	185	atG/atA																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610228	81610228	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139352934		P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	76	521	0	ENST00000298171.2:c.1826G>A	p.Arg609Gln	p.R609Q	ENST00000298171	NM_000369.2	609	cGa/cAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166742	32166742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	168	1156	2	ENST00000375023.3:c.4496G>A	p.Arg1499Gln	p.R1499Q	ENST00000375023	NM_004557.3	1499	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658501	117658501	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	56	682	0	ENST00000368508.3:c.5082G>A	p.Trp1694Ter	p.W1694*	ENST00000368508	NM_002944.2	1694	tgG/tgA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445635	49445635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	266	1614	1	ENST00000301067.7:c.1831C>T	p.Pro611Ser	p.P611S	ENST00000301067	NM_003482.3	611	Cca/Tca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974723	21974723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	337	482	0	ENST00000304494.5:c.104G>A	p.Gly35Glu	p.G35E	ENST00000304494	NM_000077.4	35	gGg/gAg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268749	46268749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	49	702	1	ENST00000371998.3:c.3034G>A	p.Asp1012Asn	p.D1012N	ENST00000371998		1012	Gat/Aat																																																																														
KDM5A	5927	MSKCC	GRCh37	12	441059	441059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	44	427	0	ENST00000399788.2:c.1699C>T	p.Pro567Ser	p.P567S	ENST00000399788	NM_001042603.1	567	Cct/Tct																																																																														
WT1	7490	MSKCC	GRCh37	11	32417871	32417871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	89	620	0	ENST00000332351.3:c.1181C>T	p.Ala394Val	p.A394V	ENST00000332351	NM_024426.4	394	gCt/gTt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292498	15292498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	257	1324	0	ENST00000263388.2:c.2681A>G	p.Asn894Ser	p.N894S	ENST00000263388	NM_000435.2	894	aAc/aGc																																																																														
MGA	23269	MSKCC	GRCh37	15	42059165	42059165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	74	404	0	ENST00000219905.7:c.8885C>T	p.Ser2962Phe	p.S2962F	ENST00000219905	NM_001164273.1	2962	tCc/tTc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780296	9780296	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	104	681	0	ENST00000377346.4:c.1466A>C	p.Glu489Ala	p.E489A	ENST00000377346	NM_005026.3	489	gAg/gCg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100729	8100729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	94	980	1	ENST00000346208.3:c.703C>T	p.Pro235Ser	p.P235S	ENST00000346208		235	Ccc/Tcc																																																																														
EED	8726	MSKCC	GRCh37	11	85989488	85989488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	64	535	0	ENST00000263360.6:c.1247C>T	p.Thr416Ile	p.T416I	ENST00000263360	NM_003797.3	416	aCc/aTc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102207765	102207765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	157	473	1	ENST00000263464.3:c.1747C>T	p.Pro583Ser	p.P583S	ENST00000263464	NM_001165.4	583	Cct/Tct																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416192	416192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	47	481	0	ENST00000399788.2:c.3994C>T	p.Pro1332Ser	p.P1332S	ENST00000399788	NM_001042603.1	1332	Cct/Tct																																																																														
RECQL	5965	MSKCC	GRCh37	12	21630868	21630868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	85	661	1	ENST00000421138.2:c.736C>T	p.Pro246Ser	p.P246S	ENST00000421138		246	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443529	49443529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	132	722	0	ENST00000301067.7:c.3842G>A	p.Gly1281Glu	p.G1281E	ENST00000301067	NM_003482.3	1281	gGa/gAa																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50481231	50481232	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	92	443	1	ENST00000394963.4:c.617_618delinsTT	p.Ser206Phe	p.S206F	ENST00000394963	NM_003076.4	206	tCC/tTT																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50488282	50488283	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	183	756	0	ENST00000394963.4:c.1196_1197delinsTT	p.Thr399Ile	p.T399I	ENST00000394963	NM_003076.4	399	aCC/aTT																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975717	26975718	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	130	423	1	ENST00000381527.3:c.1225_1226delinsTT	p.Pro409Phe	p.P409F	ENST00000381527	NM_001260.1	409	CCt/TTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589810	28589810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	85	540	1	ENST00000241453.7:c.2570C>T	p.Pro857Leu	p.P857L	ENST00000241453	NM_004119.2	857	cCc/cTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28919588	28919588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	107	580	0	ENST00000282397.4:c.2349G>A	p.Met783Ile	p.M783I	ENST00000282397	NM_002019.4	783	atG/atA																																																																														
FLT1	2321	MSKCC	GRCh37	13	28931748	28931748	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	71	582	0	ENST00000282397.4:c.2191T>G	p.Cys731Gly	p.C731G	ENST00000282397	NM_002019.4	731	Tgc/Ggc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005348	29005348	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	140	752	0	ENST00000282397.4:c.913G>C	p.Asp305His	p.D305H	ENST00000282397	NM_002019.4	305	Gac/Cac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912142	32912143	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	78	856	1	ENST00000380152.3:c.3650_3651delinsAA	p.Arg1217Lys	p.R1217K	ENST00000380152		1217	aGG/aAA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944608	32944608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	107	808	1	ENST00000380152.3:c.8401T>C	p.Phe2801Leu	p.F2801L	ENST00000380152		2801	Ttt/Ctt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950806	32950806	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	125	299	0	ENST00000380152.3:c.8633-1G>A		p.X2878_splice	ENST00000380152		2878																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610647	81610647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	92	304	0	ENST00000298171.2:c.2245C>T	p.Pro749Ser	p.P749S	ENST00000298171	NM_000369.2	749	Cca/Tca																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643331	38643331	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	69	513	0	ENST00000299084.4:c.801G>A	p.Trp267Ter	p.W267*	ENST00000299084	NM_152594.2	267	tgG/tgA																																																																														
TSC2	7249	MSKCC	GRCh37	16	2107121	2107121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	125	1241	0	ENST00000219476.3:c.790C>T	p.Leu264Phe	p.L264F	ENST00000219476	NM_000548.3	264	Ctt/Ttt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778968	3778968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	89	703	0	ENST00000262367.5:c.6080C>T	p.Pro2027Leu	p.P2027L	ENST00000262367	NM_004380.2	2027	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991942	72991942	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	91	717	0	ENST00000268489.5:c.2103T>A	p.Cys701Ter	p.C701*	ENST00000268489	NM_006885.3	701	tgT/tgA																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836615	89836615	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145334278		P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	147	1024	1	ENST00000389301.3:c.2275C>T	p.Pro759Ser	p.P759S	ENST00000389301	NM_000135.2	759	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7573007	7573026	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTGTAGGAGACAGAAGCA	GGCTGTAGGAGACAGAAGCA	-			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	71	475	0	ENST00000269305.4:c.1101-18_1102del		p.X367_splice	ENST00000269305	NM_001126112.2	367																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15973592	15973592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	184	473	0	ENST00000268712.3:c.4400C>T	p.Pro1467Leu	p.P1467L	ENST00000268712	NM_006311.3	1467	cCc/cTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7163064	7163064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	198	785	3	ENST00000302850.5:c.2008G>A	p.Glu670Lys	p.E670K	ENST00000302850	NM_000208.2	670	Gag/Aag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952568	17952568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	90	650	0	ENST00000458235.1:c.865C>T	p.Leu289Phe	p.L289F	ENST00000458235	NM_000215.3	289	Ctc/Ttc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953923	17953923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	132	1210	1	ENST00000458235.1:c.479G>A	p.Gly160Asp	p.G160D	ENST00000458235	NM_000215.3	160	gGt/gAt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273089	18273089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	132	856	1	ENST00000222254.8:c.979G>A	p.Asp327Asn	p.D327N	ENST00000222254	NM_005027.3	327	Gat/Aat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212123	36212123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	84	714	0	ENST00000222270.7:c.1874C>T	p.Pro625Leu	p.P625L	ENST00000222270	NM_014727.1	625	cCt/cTt																																																																														
CD79A	973	MSKCC	GRCh37	19	42381375	42381375	+	start_lost	Translation_Start_Site	SNP	A	A	C			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	101	686	0	ENST00000221972.3:c.1A>C	p.Met1?	p.M1?	ENST00000221972	NM_021601.3	1	Atg/Ctg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158594129	158594129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	58	484	0	ENST00000263640.3:c.1444C>T	p.Pro482Ser	p.P482S	ENST00000263640	NM_001105.4	482	Cca/Tca																																																																														
CUL3	8452	MSKCC	GRCh37	2	225449666	225449667	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	150	443	2	ENST00000264414.4:c.60_61delinsTA	p.Phe21Ile	p.F21I	ENST00000264414	NM_003590.4	20	gcCTtt/gcTAtt																																																																														
PAK7	0	MSKCC	GRCh37	20	9624940	9624940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	91	424	0	ENST00000353224.5:c.37G>T	p.Gly13Cys	p.G13C	ENST00000353224	NM_177990.2	13	Ggc/Tgc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755647	39755647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	234	935	1	ENST00000288319.7:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000288319	NM_182918.3	373	tAt/tGt																																																																														
CRKL	1399	MSKCC	GRCh37	22	21304081	21304081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	315	620	0	ENST00000354336.3:c.860C>T	p.Pro287Leu	p.P287L	ENST00000354336	NM_005207.3	287	cCc/cTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574472	41574472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	164	770	0	ENST00000263253.7:c.6757G>A	p.Ala2253Thr	p.A2253T	ENST00000263253	NM_001429.3	2253	Gca/Aca																																																																														
MST1	4485	MSKCC	GRCh37	3	49722256	49722256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	94	908	0	ENST00000449682.2:c.1684G>A	p.Gly562Arg	p.G562R	ENST00000449682	NM_020998.3	562	Gga/Aga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52595875	52595875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	117	813	0	ENST00000394830.3:c.4040C>T	p.Ala1347Val	p.A1347V	ENST00000394830	NM_018313.4	1347	gCc/gTc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119624639	119624639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	68	530	0	ENST00000316626.5:c.776G>A	p.Gly259Glu	p.G259E	ENST00000316626		259	gGg/gAg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205080	128205080	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	273	1143	0	ENST00000341105.2:c.361T>G	p.Phe121Val	p.F121V	ENST00000341105	NM_032638.4	121	Ttc/Gtc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169953063	169953064	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	183	698	1	ENST00000295797.4:c.147_148delinsTT	p.Leu50Phe	p.L50F	ENST00000295797	NM_002740.5	49	ggCCtt/ggTTtt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917437	178917492	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGTAATAGAATGTTATATTCTTTATGTAATTTTATTAAAGGTTTTGCTATCGGCA	ATGTAATAGAATGTTATATTCTTTATGTAATTTTATTAAAGGTTTTGCTATCGGCA	-			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	25	194	0	ENST00000263967.3:c.353-41_367del		p.X118_splice	ENST00000263967	NM_006218.2	118																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186504006	186504006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	51	366	0	ENST00000323963.5:c.571C>T	p.Arg191Cys	p.R191C	ENST00000323963		191	Cgt/Tgt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1918661	1918662	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	142	521	1	ENST00000382891.5:c.824_825delinsAA	p.Trp275Ter	p.W275*	ENST00000382891	NM_133335.3	275	tGG/tAA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127439	55127439	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	1174	717	0	ENST00000257290.5:c.227A>G	p.Asn76Ser	p.N76S	ENST00000257290	NM_006206.4	76	aAc/aGc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152054	55152054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1397	107	805	0	ENST00000257290.5:c.2486G>A	p.Gly829Glu	p.G829E	ENST00000257290	NM_006206.4	829	gGa/gAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106193772	106193772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	49	300	0	ENST00000380013.4:c.4234G>A	p.Asp1412Asn	p.D1412N	ENST00000380013	NM_001127208.2	1412	Gat/Aat																																																																														
TET2	54790	MSKCC	GRCh37	4	106197111	106197111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	54	364	0	ENST00000380013.4:c.5444G>C	p.Gly1815Ala	p.G1815A	ENST00000380013	NM_001127208.2	1815	gGc/gCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524510	187524511	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	100	858	1	ENST00000441802.2:c.11169_11170delinsAT	p.Glu3724Ter	p.E3724*	ENST00000441802	NM_005245.3	3723	gaGGaa/gaATaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629714	187629714	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	208	784	2	ENST00000441802.2:c.1268del	p.Leu423Ter	p.L423*	ENST00000441802	NM_005245.3	423	tTa/ta																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38947463	38947463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	59	363	0	ENST00000357387.3:c.4217C>T	p.Ser1406Phe	p.S1406F	ENST00000357387	NM_152756.3	1406	tCt/tTt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38958579	38958580	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	51	229	0	ENST00000357387.3:c.2385_2386delinsTT	p.His796Tyr	p.H796Y	ENST00000357387	NM_152756.3	795	tcCCac/tcTTac																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149501554	149501554	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	118	795	0	ENST00000261799.4:c.2233A>G	p.Lys745Glu	p.K745E	ENST00000261799	NM_002609.3	745	Aag/Gag																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149513304	149513304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	172	623	0	ENST00000261799.4:c.779C>T	p.Pro260Leu	p.P260L	ENST00000261799	NM_002609.3	260	cCg/cTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149513463	149513463	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	106	717	0	ENST00000261799.4:c.740G>A	p.Trp247Ter	p.W247*	ENST00000261799	NM_002609.3	247	tGg/tAg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672561	30672561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	124	1003	0	ENST00000376406.3:c.4399C>T	p.Pro1467Ser	p.P1467S	ENST00000376406	NM_014641.2	1467	Cct/Tct																																																																														
STK19	8859	MSKCC	GRCh37	6	31948262	31948262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	295	1081	0	ENST00000375331.2:c.838G>A	p.Asp280Asn	p.D280N	ENST00000375331	NM_004197.1	280	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190408	32190408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	132	1235	0	ENST00000375023.3:c.331G>A	p.Gly111Ser	p.G111S	ENST00000375023	NM_004557.3	111	Ggt/Agt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815329	32815330	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	148	1142	1	ENST00000354258.4:c.2043_2044delinsTT	p.His682Tyr	p.H682Y	ENST00000354258	NM_000593.5	681	gcCCat/gcTTat																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790641	89790641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	268	1485	1	ENST00000336032.3:c.28G>A	p.Glu10Lys	p.E10K	ENST00000336032	NM_006813.2	10	Gag/Aag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686842	117686842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	42	305	0	ENST00000368508.3:c.2875G>A	p.Glu959Lys	p.E959K	ENST00000368508	NM_002944.2	959	Gaa/Aaa																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137525573	137525573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	156	675	0	ENST00000367739.4:c.442C>T	p.Pro148Ser	p.P148S	ENST00000367739	NM_000416.2	148	Cct/Tct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522611	157522611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	102	627	0	ENST00000346085.5:c.4883C>T	p.Ser1628Phe	p.S1628F	ENST00000346085	NM_020732.3	1628	tCc/tTc																																																																														
PARK2	0	MSKCC	GRCh37	6	162206881	162206881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	70	358	0	ENST00000366898.1:c.794A>G	p.His265Arg	p.H265R	ENST00000366898	NM_004562.2	265	cAc/cGc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963895	2963896	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	260	845	0	ENST00000396946.4:c.1911_1912delinsTT	p.Leu638Phe	p.L638F	ENST00000396946	NM_032415.4	637	aaCCtc/aaTTtc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468293	50468293	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	63	612	0	ENST00000331340.3:c.1528A>G	p.Thr510Ala	p.T510A	ENST00000331340	NM_006060.4	510	Acg/Gcg																																																																														
HGF	3082	MSKCC	GRCh37	7	81372729	81372729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	79	456	1	ENST00000222390.5:c.805C>T	p.Pro269Ser	p.P269S	ENST00000222390	NM_000601.4	269	Cca/Tca																																																																														
SYK	6850	MSKCC	GRCh37	9	93606536	93606537	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	94	869	0	ENST00000375746.1:c.356_357delinsTT	p.Pro119Leu	p.P119L	ENST00000375746	NM_001174167.1	119	cCC/cTT																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781263	135781263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	90	633	0	ENST00000298552.3:c.1702G>A	p.Gly568Arg	p.G568R	ENST00000298552	NM_001162426.1	568	Gga/Aga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418357	139418357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	369	1553	0	ENST00000277541.6:c.215G>A	p.Gly72Glu	p.G72E	ENST00000277541	NM_017617.3	72	gGg/gAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006821	47006821	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	304	450	0	ENST00000329236.7:c.-60G>A		p.*20*	ENST00000329236	NM_001204466.1																																																																																
FAM58A	0	MSKCC	GRCh37	X	152861461	152861462	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0033378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	48	170	0	ENST00000406277.2:c.290_290+1delinsAA		p.X97_splice	ENST00000406277	NM_152274.4	97																																																																															
RB1	5925	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	98	376	0	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	180	685	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11316237	11316237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	86	382	0	ENST00000361445.4:c.517C>T	p.Arg173Cys	p.R173C	ENST00000361445	NM_004958.3	173	Cgt/Tgt																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	159	399	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	55	367	0				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9857635	9857635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	82	523	0	ENST00000330684.3:c.3766G>A	p.Glu1256Lys	p.E1256K	ENST00000330684	NM_001134407.1	1256	Gag/Aag																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614583	38614583	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	215	554	0	ENST00000299084.4:c.349C>T	p.Arg117Ter	p.R117*	ENST00000299084	NM_152594.2	117	Cga/Tga																																																																														
WT1	7490	MSKCC	GRCh37	11	32421547	32421547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	138	607	0	ENST00000332351.3:c.1045C>T	p.Leu349Phe	p.L349F	ENST00000332351	NM_024426.4	349	Ctc/Ttc																																																																														
RB1	5925	MSKCC	GRCh37	13	49033967	49033967	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	192	408	0	ENST00000267163.4:c.2104C>T	p.Gln702Ter	p.Q702*	ENST00000267163	NM_000321.2	702	Caa/Taa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972729	25972729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	149	515	0	ENST00000435504.4:c.1696C>T	p.Leu566Phe	p.L566F	ENST00000435504		566	Ctc/Ttc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546862	9546862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	117	525	0	ENST00000353224.5:c.1160C>T	p.Ser387Phe	p.S387F	ENST00000353224	NM_177990.2	387	tCc/tTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561532	9561532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	101	547	1	ENST00000353224.5:c.250G>A	p.Gly84Ser	p.G84S	ENST00000353224	NM_177990.2	84	Ggc/Agc																																																																														
SRC	6714	MSKCC	GRCh37	20	36028554	36028554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	121	621	0	ENST00000358208.4:c.896C>T	p.Thr299Ile	p.T299I	ENST00000358208		299	aCc/aTc																																																																														
BCL6	604	MSKCC	GRCh37	3	187447183	187447183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	164	711	0	ENST00000232014.4:c.1010C>T	p.Ser337Phe	p.S337F	ENST00000232014	NM_001130845.1	337	tCt/tTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542585	187542585	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200903267		P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	121	614	0	ENST00000441802.2:c.5155A>G	p.Ile1719Val	p.I1719V	ENST00000441802	NM_005245.3	1719	Atc/Gtc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268856	98268856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	63	341	0	ENST00000331920.6:c.227C>T	p.Pro76Leu	p.P76L	ENST00000331920	NM_000264.3	76	cCg/cTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922791	44922791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	113	478	1	ENST00000377967.4:c.1652C>T	p.Pro551Leu	p.P551L	ENST00000377967	NM_021140.2	551	cCt/cTt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412056	63412056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	110	824	0	ENST00000330258.3:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000330258	NM_152424.3	371	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	110	277	0				ENST00000310581	NM_198253.2																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8485860	8485860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	128	403	0	ENST00000356435.5:c.2957C>T	p.Pro986Leu	p.P986L	ENST00000356435		986	cCa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112177677	112177677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	114	313	0	ENST00000257430.4:c.6386C>T	p.Ser2129Leu	p.S2129L	ENST00000257430	NM_000038.5	2129	tCg/tTg																																																																														
BTK	695	MSKCC	GRCh37	X	100611248	100611248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	143	446	0	ENST00000308731.7:c.1358C>T	p.Ser453Phe	p.S453F	ENST00000308731	NM_000061.2	453	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687400	117687400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	155	351	0	ENST00000368508.3:c.2651C>T	p.Ser884Phe	p.S884F	ENST00000368508	NM_002944.2	884	tCc/tTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552823	106552823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	198	502	0	ENST00000369096.4:c.788G>A	p.Gly263Glu	p.G263E	ENST00000369096	NM_001198.3	263	gGa/gAa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803171	1803171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	238	649	0	ENST00000260795.2:c.523C>T	p.Arg175Cys	p.R175C	ENST00000260795		175	Cgc/Tgc																																																																														
KDR	3791	MSKCC	GRCh37	4	55976861	55976861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	185	515	0	ENST00000263923.4:c.1051C>T	p.Pro351Ser	p.P351S	ENST00000263923	NM_002253.2	351	Cct/Tct																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866442	42866442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	585	794	0	ENST00000398585.3:c.190C>T	p.Pro64Ser	p.P64S	ENST00000398585	NM_001135099.1	64	Ccc/Tcc																																																																														
PARK2	0	MSKCC	GRCh37	6	162622239	162622239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	155	444	0	ENST00000366898.1:c.458C>T	p.Pro153Leu	p.P153L	ENST00000366898	NM_004562.2	153	cCc/cTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244982	123244982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	207	493	1	ENST00000358487.5:c.2122C>T	p.Pro708Ser	p.P708S	ENST00000358487	NM_000141.4	708	Ccc/Tcc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683508	182683508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	125	517	1	ENST00000292782.4:c.37C>T	p.Arg13Cys	p.R13C	ENST00000292782	NM_020640.2	13	Cgt/Tgt																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	263	658	1	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
BTK	695	MSKCC	GRCh37	X	100626628	100626628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	145	370	1	ENST00000308731.7:c.302C>T	p.Pro101Leu	p.P101L	ENST00000308731	NM_000061.2	101	cCc/cTc																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2492117	2492117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	199	556	0	ENST00000355716.4:c.515C>T	p.Pro172Leu	p.P172L	ENST00000355716	NM_003820.2	172	cCc/cTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176469	123176469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	109	294	2	ENST00000218089.9:c.436C>T	p.Arg146Ter	p.R146*	ENST00000218089	NM_001042749.1	146	Cga/Tga																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781403	135781403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	156	428	0	ENST00000298552.3:c.1562C>T	p.Ser521Leu	p.S521L	ENST00000298552	NM_001162426.1	521	tCg/tTg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045815	143045815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	166	470	0	ENST00000262992.4:c.1819C>T	p.Leu607Phe	p.L607F	ENST00000262992	NM_001101669.1	607	Ctt/Ttt																																																																														
SDHB	6390	MSKCC	GRCh37	1	17354360	17354360	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	133	367	0	ENST00000375499.3:c.424G>A	p.Asp142Asn	p.D142N	ENST00000375499	NM_003000.2	142	Gat/Aat																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852253	63852254	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	150	428	0	ENST00000279873.7:c.3031_3032delinsTT	p.Pro1011Leu	p.P1011L	ENST00000279873	NM_032199.2	1011	CCg/TTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123298148	123298148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	137	519	0	ENST00000358487.5:c.706G>A	p.Glu236Lys	p.E236K	ENST00000358487	NM_000141.4	236	Gaa/Aaa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129352	64129352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	166	519	0	ENST00000334205.4:c.784C>T	p.Pro262Ser	p.P262S	ENST00000334205	NM_003942.2	262	Ccc/Tcc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202509	67202510	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	180	660	1	ENST00000312629.5:c.1318_1319delinsTT	p.Pro440Leu	p.P440L	ENST00000312629	NM_003952.2	440	CCg/TTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863432	57863433	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	196	493	1	ENST00000228682.2:c.1527_1528delinsTT	p.Arg510Trp	p.R510W	ENST00000228682	NM_005269.2	509	ctCCgg/ctTTgg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233142	69233142	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	111	299	0	ENST00000462284.1:c.1007T>A	p.Leu336His	p.L336H	ENST00000462284	NM_002392.5	336	cTt/cAt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926248	112926248	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	378	511	2	ENST00000351677.2:c.1381G>T	p.Ala461Ser	p.A461S	ENST00000351677	NM_002834.3	461	Gct/Tct																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434860	110434860	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	247	728	0	ENST00000375856.3:c.3541T>A	p.Ser1181Thr	p.S1181T	ENST00000375856	NM_003749.2	1181	Tct/Act																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68352677	68352677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	129	389	1	ENST00000487270.1:c.544G>A	p.Glu182Lys	p.E182K	ENST00000487270	NM_133509.3	182	Gaa/Aaa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251006	99251006	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	151	459	0	ENST00000268035.6:c.310A>G	p.Thr104Ala	p.T104A	ENST00000268035	NM_000875.3	104	Acg/Gcg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396754	396754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	169	500	0	ENST00000262320.3:c.272C>T	p.Ser91Phe	p.S91F	ENST00000262320	NM_003502.3	91	tCc/tTc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118583	17118583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	173	487	0	ENST00000285071.4:c.1348C>T	p.His450Tyr	p.H450Y	ENST00000285071	NM_144997.5	450	Cac/Tac																																																																														
NF1	4763	MSKCC	GRCh37	17	29557315	29557315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	119	321	0	ENST00000358273.4:c.3028C>T	p.Gln1010Ter	p.Q1010*	ENST00000358273	NM_001042492.2	1010	Caa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29563006	29563006	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	193	499	2	ENST00000358273.4:c.3941G>A	p.Trp1314Ter	p.W1314*	ENST00000358273	NM_001042492.2	1314	tGg/tAg																																																																														
RARA	5914	MSKCC	GRCh37	17	38487506	38487507	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	116	427	0	ENST00000254066.5:c.36_37delinsAA	p.Gly13Ser	p.G13S	ENST00000254066	NM_000964.3	12	ggGGgc/ggAAgc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59820487	59820487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	130	336	0	ENST00000259008.2:c.2266C>T	p.Leu756Phe	p.L756F	ENST00000259008	NM_032043.2	756	Ctc/Ttc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59853910	59853910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	111	328	0	ENST00000259008.2:c.1949C>T	p.Thr650Ile	p.T650I	ENST00000259008	NM_032043.2	650	aCc/aTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212135	36212135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	245	365	1	ENST00000222270.7:c.1886C>T	p.Pro629Leu	p.P629L	ENST00000222270	NM_014727.1	629	cCg/cTg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39262354	39262354	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	139	373	0	ENST00000402219.2:c.1073A>G	p.Lys358Arg	p.K358R	ENST00000402219	NM_005633.3	358	aAg/aGg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630344	47630344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	156	469	0	ENST00000233146.2:c.14C>G	p.Pro5Arg	p.P5R	ENST00000233146	NM_000251.2	5	cCg/cGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944545	40944545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200852571		P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	663	367	1	ENST00000373198.4:c.1957C>T	p.Arg653Trp	p.R653W	ENST00000373198	NM_133170.3	653	Cgg/Tgg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799689	72799689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	215	526	0	ENST00000325599.8:c.1480C>T	p.Pro494Ser	p.P494S	ENST00000325599	NM_018130.2	494	Ccc/Tcc																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114170	73114170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	130	291	0	ENST00000356692.5:c.806C>T	p.Ser269Phe	p.S269F	ENST00000356692		269	tCt/tTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462299	89462299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	132	344	0	ENST00000336596.2:c.1771C>T	p.Pro591Ser	p.P591S	ENST00000336596	NM_005233.5	591	Cca/Tca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917628	178917628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	121	320	0	ENST00000263967.3:c.503C>T	p.Pro168Leu	p.P168L	ENST00000263967	NM_006218.2	168	cCt/cTt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526531	31526532	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	258	721	2	ENST00000344624.3:c.508_509delinsTT	p.Pro170Leu	p.P170L	ENST00000344624		170	CCg/TTg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86637108	86637108	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	52	239	0	ENST00000274376.6:c.1019G>A	p.Gly340Asp	p.G340D	ENST00000274376	NM_002890.2	340	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175433	112175433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	97	236	0	ENST00000257430.4:c.4142C>T	p.Pro1381Leu	p.P1381L	ENST00000257430	NM_000038.5	1381	cCa/cTa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497259	149497259	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	194	610	0	ENST00000261799.4:c.3059A>C	p.Asp1020Ala	p.D1020A	ENST00000261799	NM_002609.3	1020	gAc/gCc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679668	30679668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	195	546	0	ENST00000376406.3:c.2051C>T	p.Ser684Phe	p.S684F	ENST00000376406	NM_014641.2	684	tCt/tTt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974393	93974393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	109	346	0	ENST00000369303.4:c.1661C>T	p.Pro554Leu	p.P554L	ENST00000369303	NM_004440.3	554	cCt/cTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117700292	117700292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	135	361	0	ENST00000368508.3:c.2527G>A	p.Gly843Arg	p.G843R	ENST00000368508	NM_002944.2	843	Ggg/Agg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958126	2958126	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	215	615	0	ENST00000396946.4:c.2606G>A	p.Arg869Gln	p.R869Q	ENST00000396946	NM_032415.4	869	cGg/cAg																																																																														
HGF	3082	MSKCC	GRCh37	7	81388118	81388118	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	121	358	0	ENST00000222390.5:c.257C>T	p.Ala86Val	p.A86V	ENST00000222390	NM_000601.4	86	gCt/gTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68930115	68930115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	122	348	0	ENST00000288368.4:c.176C>T	p.Ser59Leu	p.S59L	ENST00000288368	NM_024870.2	59	tCa/tTa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978647	70978647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	236	624	0	ENST00000276594.2:c.1006G>A	p.Glu336Lys	p.E336K	ENST00000276594	NM_024504.3	336	Gag/Aag																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981890	70981890	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	226	655	0	ENST00000276594.2:c.206T>A	p.Phe69Tyr	p.F69Y	ENST00000276594	NM_024504.3	69	tTc/tAc																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923369	36923369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	206	505	0	ENST00000358127.4:c.893C>T	p.Ser298Phe	p.S298F	ENST00000358127	NM_001280556.1	298	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391433	139391433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	203	597	0	ENST00000277541.6:c.6758C>T	p.Pro2253Leu	p.P2253L	ENST00000277541	NM_017617.3	2253	cCc/cTc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860009	152860010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGG			P-0033654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	109	368	0	ENST00000406277.2:c.415_418dup	p.His140ProfsTer66	p.H140Pfs*66	ENST00000406277	NM_152274.4	140	cac/cCCACac																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0033795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	1108	698	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862896	9862896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	269	627	0	ENST00000330684.3:c.2407G>A	p.Glu803Lys	p.E803K	ENST00000330684	NM_001134407.1	803	Gag/Aag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230613	46230613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	180	581	0	ENST00000334344.6:c.862C>T	p.Gln288Ter	p.Q288*	ENST00000334344	NM_152641.2	288	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0033795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	331	293	0				ENST00000310581	NM_198253.2																																																																																
PTEN	5728	MSKCC	GRCh37	10	89720677	89720678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	39	194	0	ENST00000371953.3:c.829dup	p.Thr277AsnfsTer21	p.T277Nfs*21	ENST00000371953	NM_000314.4	276	-/A																																																																														
POLE	5426	MSKCC	GRCh37	12	133235998	133235998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	147	679	0	ENST00000320574.5:c.3158C>T	p.Ser1053Phe	p.S1053F	ENST00000320574	NM_006231.2	1053	tCc/tTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049724	16049724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	148	640	0	ENST00000268712.3:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000268712	NM_006311.3	350	Cga/Tga																																																																														
PAK7	0	MSKCC	GRCh37	20	9538344	9538344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	104	558	0	ENST00000353224.5:c.1654G>A	p.Val552Ile	p.V552I	ENST00000353224	NM_177990.2	552	Gtt/Att																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0034168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	82	386	0				ENST00000310581	NM_198253.2																																																																																
EPHA7	2045	MSKCC	GRCh37	6	94120405	94120405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	149	418	1	ENST00000369303.4:c.646C>T	p.Pro216Ser	p.P216S	ENST00000369303	NM_004440.3	216	Cca/Tca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	59	546	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465483	99465483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	78	721	1	ENST00000268035.6:c.2308G>A	p.Glu770Lys	p.E770K	ENST00000268035	NM_000875.3	770	Gag/Aag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468158	50468158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	175	743	0	ENST00000331340.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331340	NM_006060.4	465	Gaa/Aaa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980007	7980007	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147992320		P-0034178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	62	866	0	ENST00000319144.4:c.1330G>A	p.Val444Ile	p.V444I	ENST00000319144	NM_001139.2	444	Gtt/Att																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292591	15292591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	149	888	0	ENST00000263388.2:c.2588C>T	p.Ser863Leu	p.S863L	ENST00000263388	NM_000435.2	863	tCg/tTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724637	43724637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	109	1156	1	ENST00000382044.4:c.3430C>T	p.Pro1144Ser	p.P1144S	ENST00000382044	NM_001141980.1	1144	Cct/Tct																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874550	35874550	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0034178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	59	661	0	ENST00000303115.3:c.707-1G>A		p.X236_splice	ENST00000303115	NM_002185.3	236																																																																															
MDC1	9656	MSKCC	GRCh37	6	30675907	30675907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	247	1008	0	ENST00000376406.3:c.2449C>T	p.Pro817Ser	p.P817S	ENST00000376406	NM_014641.2	817	Cca/Tca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	97	438	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38950061	38950061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	147	456	0	ENST00000357387.3:c.3889C>T	p.Pro1297Ser	p.P1297S	ENST00000357387	NM_152756.3	1297	Cct/Tct																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	297	410	2	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	171	550	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945093	31945093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	175	653	0	ENST00000340398.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000340398	NM_001013699.2	3	cGa/cAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104619	69104619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753704		P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	232	745	0	ENST00000288368.4:c.4463C>T	p.Ser1488Leu	p.S1488L	ENST00000288368	NM_024870.2	1488	tCg/tTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55955960	55955960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	119	453	0	ENST00000263923.4:c.3202C>T	p.Pro1068Ser	p.P1068S	ENST00000263923	NM_002253.2	1068	Cct/Tct																																																																														
TET1	80312	MSKCC	GRCh37	10	70450763	70450763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	133	478	0	ENST00000373644.4:c.5603C>T	p.Ala1868Val	p.A1868V	ENST00000373644	NM_030625.2	1868	gCc/gTc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	185	500	0	ENST00000371085.3:c.601C>G	p.Arg201Gly	p.R201G	ENST00000371085	NM_000516.4	201	Cgt/Ggt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222961	36222961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	327	933	2	ENST00000222270.7:c.5590C>T	p.Arg1864Ter	p.R1864*	ENST00000222270	NM_014727.1	1864	Cga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965586	93965586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	172	487	1	ENST00000369303.4:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000369303	NM_004440.3	781	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348885	118348885	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	128	259	0	ENST00000534358.1:c.3539del	p.Gly1180ValfsTer5	p.G1180Vfs*5	ENST00000534358	NM_005933.3	1180	Ggt/gt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352579	118352579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	139	448	0	ENST00000534358.1:c.3784C>T	p.Pro1262Ser	p.P1262S	ENST00000534358	NM_005933.3	1262	Cct/Tct																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285807	46285807	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	131	404	1	ENST00000334344.6:c.5075C>A	p.Ser1692Ter	p.S1692*	ENST00000334344	NM_152641.2	1692	tCa/tAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287465	46287465	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	169	500	1	ENST00000334344.6:c.5324T>A	p.Ile1775Lys	p.I1775K	ENST00000334344	NM_152641.2	1775	aTa/aAa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631579	28631579	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	151	356	0	ENST00000241453.7:c.389T>A	p.Ile130Asn	p.I130N	ENST00000241453	NM_004119.2	130	aTt/aAt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570399	95570399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	130	368	0	ENST00000343455.3:c.3334A>G	p.Asn1112Asp	p.N1112D	ENST00000343455	NM_177438.2	1112	Aac/Gac																																																																														
BLM	641	MSKCC	GRCh37	15	91292626	91292626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	81	249	2	ENST00000355112.3:c.128C>T	p.Ser43Leu	p.S43L	ENST00000355112	NM_000057.2	43	tCa/tTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820642	3820642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	599	832	0	ENST00000262367.5:c.2809C>T	p.Pro937Ser	p.P937S	ENST00000262367	NM_004380.2	937	Ccg/Tcg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819628	81819628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	345	502	0	ENST00000359376.3:c.34G>A	p.Glu12Lys	p.E12K	ENST00000359376	NM_002661.3	12	Gaa/Aaa																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526519	66526519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	354	468	0	ENST00000358598.2:c.1075C>T	p.Leu359Phe	p.L359F	ENST00000358598	NM_212471.2	359	Ctt/Ttt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302249	15302249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	198	646	0	ENST00000263388.2:c.1022C>T	p.Pro341Leu	p.P341L	ENST00000263388	NM_000435.2	341	cCc/cTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366210	15366210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	239	769	0	ENST00000263377.2:c.1945C>T	p.Pro649Ser	p.P649S	ENST00000263377	NM_058243.2	649	Ccc/Tcc																																																																														
ATR	545	MSKCC	GRCh37	3	142266628	142266628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	138	439	0	ENST00000350721.4:c.3296C>T	p.Ser1099Leu	p.S1099L	ENST00000350721	NM_001184.3	1099	tCa/tTa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38942435	38942435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	134	474	0	ENST00000357387.3:c.5098C>T	p.Pro1700Ser	p.P1700S	ENST00000357387	NM_152756.3	1700	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112179177	112179177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	98	339	0	ENST00000257430.4:c.7886C>T	p.Thr2629Ile	p.T2629I	ENST00000257430	NM_000038.5	2629	aCc/aTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149440512	149440512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	155	564	0	ENST00000286301.3:c.1882G>A	p.Glu628Lys	p.E628K	ENST00000286301	NM_005211.3	628	Gag/Aag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185037	32185037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	136	532	1	ENST00000375023.3:c.1631C>T	p.Ser544Phe	p.S544F	ENST00000375023	NM_004557.3	544	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	64	352	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140494148	140494148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	194	758	1	ENST00000288602.6:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000288602	NM_004333.4	367	cCc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140501356	140501356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	73	185	0	ENST00000288602.6:c.716G>A	p.Arg239Gln	p.R239Q	ENST00000288602	NM_004333.4	239	cGa/cAa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	109	640	0	ENST00000344626.4:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000344626	NM_003072.3	882	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032069	10032069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868215122		P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	86	502	1	ENST00000330684.3:c.754G>A	p.Asp252Asn	p.D252N	ENST00000330684	NM_001134407.1	252	Gat/Aat																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729679	41729679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	103	524	0	ENST00000242208.4:c.850G>A	p.Glu284Lys	p.E284K	ENST00000242208	NM_002192.2	284	Gaa/Aaa																																																																														
PGR	5241	MSKCC	GRCh37	11	100998688	100998688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	118	683	0	ENST00000325455.5:c.1114G>A	p.Asp372Asn	p.D372N	ENST00000325455	NM_001202474.3	372	Gac/Aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453145	140453146	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	158	308	2	ENST00000288602.6:c.1789_1790delinsTC	p.Leu597Ser	p.L597S	ENST00000288602	NM_004333.4	597	CTa/TCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140494160	140494160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	259	755	0	ENST00000288602.6:c.1088C>T	p.Ser363Phe	p.S363F	ENST00000288602	NM_004333.4	363	tCc/tTc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444346	50444346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	73	334	1	ENST00000331340.3:c.276G>A	p.Met92Ile	p.M92I	ENST00000331340	NM_006060.4	92	atG/atA																																																																														
TET1	80312	MSKCC	GRCh37	10	70332469	70332469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	108	515	0	ENST00000373644.4:c.374C>T	p.Ser125Phe	p.S125F	ENST00000373644	NM_030625.2	125	tCc/tTc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119634982	119634982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	46	185	0	ENST00000316626.5:c.517C>T	p.His173Tyr	p.H173Y	ENST00000316626		173	Cat/Tat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059183	27059183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	74	384	0	ENST00000324856.7:c.1820C>T	p.Ser607Leu	p.S607L	ENST00000324856	NM_006015.4	607	tCa/tTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101197	41101197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	86	539	0	ENST00000373198.4:c.1159G>A	p.Val387Ile	p.V387I	ENST00000373198	NM_133170.3	387	Gta/Ata																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344269	118344269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	105	446	0	ENST00000534358.1:c.2395C>T	p.Pro799Ser	p.P799S	ENST00000534358	NM_005933.3	799	Cct/Tct																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004816	150004816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	104	462	0	ENST00000253339.5:c.1409G>A	p.Gly470Glu	p.G470E	ENST00000253339		470	gGa/gAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056321	27056321	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	77	314	0	ENST00000324856.7:c.1317del	p.Ser440ValfsTer179	p.S440Vfs*179	ENST00000324856	NM_006015.4	439	caG/ca																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932131	36932132	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	49	446	1	ENST00000361632.4:c.2337_2338delinsTT	p.Leu780Phe	p.L780F	ENST00000361632		779	ggCCtc/ggTTtc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246021805	246021805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	127	550	1	ENST00000388985.4:c.1069C>T	p.Pro357Ser	p.P357S	ENST00000388985		357	Cca/Tca																																																																														
MRE11A	0	MSKCC	GRCh37	11	94219145	94219145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	75	428	0	ENST00000323929.3:c.259C>T	p.Arg87Trp	p.R87W	ENST00000323929	NM_005591.3	87	Cgg/Tgg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18446936	18446936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	70	317	0	ENST00000266497.5:c.1021G>A	p.Glu341Lys	p.E341K	ENST00000266497		341	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800940	18800940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	72	354	0	ENST00000266497.5:c.4316C>T	p.Pro1439Leu	p.P1439L	ENST00000266497		1439	cCa/cTa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611397	28611397	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	111	490	0	ENST00000241453.7:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000241453	NM_004119.2	412	Cag/Tag																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012402	29012402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	106	577	0	ENST00000282397.4:c.469C>T	p.Pro157Ser	p.P157S	ENST00000282397	NM_002019.4	157	Ccc/Tcc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43739672	43739672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	46	162	0	ENST00000382044.4:c.2728C>T	p.His910Tyr	p.H910Y	ENST00000382044	NM_001141980.1	910	Cat/Tat																																																																														
SLX4	84464	MSKCC	GRCh37	16	3652201	3652201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	125	698	0	ENST00000294008.3:c.868G>A	p.Glu290Lys	p.E290K	ENST00000294008	NM_032444.2	290	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819308	3819308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	210	552	0	ENST00000262367.5:c.2927C>T	p.Ser976Phe	p.S976F	ENST00000262367	NM_004380.2	976	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831335	72831335	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	71	400	0	ENST00000268489.5:c.5246A>G	p.Gln1749Arg	p.Q1749R	ENST00000268489	NM_006885.3	1749	cAg/cGg																																																																														
RARA	5914	MSKCC	GRCh37	17	38510602	38510602	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	104	497	1	ENST00000254066.5:c.856T>C	p.Phe286Leu	p.F286L	ENST00000254066	NM_000964.3	286	Ttc/Ctc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224139	36224139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	70	661	0	ENST00000222270.7:c.6689C>T	p.Thr2230Ile	p.T2230I	ENST00000222270	NM_014727.1	2230	aCc/aTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227730	36227730	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	90	537	0	ENST00000222270.7:c.7297+2T>C		p.X2433_splice	ENST00000222270	NM_014727.1	2433																																																																															
AXL	558	MSKCC	GRCh37	19	41765592	41765592	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	90	609	1	ENST00000301178.4:c.2468A>G	p.Asn823Ser	p.N823S	ENST00000301178	NM_021913.4	823	aAc/aGc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910656	50910656	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	102	565	0	ENST00000440232.2:c.1759A>T	p.Ile587Phe	p.I587F	ENST00000440232	NM_002691.3	587	Atc/Ttc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607658	46607658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	122	664	1	ENST00000263734.3:c.1847C>T	p.Ser616Phe	p.S616F	ENST00000263734	NM_001430.4	616	tCc/tTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273224	198273224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	134	607	0	ENST00000335508.6:c.986C>T	p.Pro329Leu	p.P329L	ENST00000335508	NM_012433.2	329	cCt/cTt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273270	198273270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	108	500	0	ENST00000335508.6:c.940C>T	p.Pro314Ser	p.P314S	ENST00000335508	NM_012433.2	314	Cct/Tct																																																																														
PAK7	0	MSKCC	GRCh37	20	9523316	9523316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	80	477	2	ENST00000353224.5:c.1921C>T	p.Pro641Ser	p.P641S	ENST00000353224	NM_177990.2	641	Ccc/Tcc																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73096456	73096456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	36	117	0	ENST00000356692.5:c.236C>T	p.Pro79Leu	p.P79L	ENST00000356692		79	cCc/cTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916869	178916869	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	124	578	0	ENST00000263967.3:c.256A>T	p.Thr86Ser	p.T86S	ENST00000263967	NM_006218.2	86	Aca/Tca																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957008	1957008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	122	483	0	ENST00000382891.5:c.2459G>A	p.Arg820Gln	p.R820Q	ENST00000382891	NM_133335.3	820	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628527	187628527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	133	699	1	ENST00000441802.2:c.2455C>T	p.Pro819Ser	p.P819S	ENST00000441802	NM_005245.3	819	Cca/Tca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295334	1295334	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	91	443	0				ENST00000310581	NM_198253.2																																																																																
IFNGR1	3459	MSKCC	GRCh37	6	137527399	137527399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	69	321	0	ENST00000367739.4:c.247C>T	p.His83Tyr	p.H83Y	ENST00000367739	NM_000416.2	83	Cat/Tat																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729597	41729597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	73	469	0	ENST00000242208.4:c.932G>A	p.Gly311Asp	p.G311D	ENST00000242208	NM_002192.2	311	gGc/gAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046395	69046395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	95	485	0	ENST00000288368.4:c.3868T>C	p.Phe1290Leu	p.F1290L	ENST00000288368	NM_024870.2	1290	Ttt/Ctt																																																																														
NBN	4683	MSKCC	GRCh37	8	90965887	90965887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	57	278	0	ENST00000265433.3:c.1430C>T	p.Ser477Leu	p.S477L	ENST00000265433	NM_002485.4	477	tCa/tTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410754	63410754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	83	296	0	ENST00000330258.3:c.2413C>A	p.Pro805Thr	p.P805T	ENST00000330258	NM_152424.3	805	Ccc/Acc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	119	499	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636143	28636143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	61	411	0	ENST00000241453.7:c.229G>A	p.Glu77Lys	p.E77K	ENST00000241453	NM_004119.2	77	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	42002918	42002918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	39	307	1	ENST00000219905.7:c.2455C>T	p.Arg819Cys	p.R819C	ENST00000219905	NM_001164273.1	819	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	24	326	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	24	326	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100324	27100324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	132	431	0	ENST00000324856.7:c.4036C>T	p.Gln1346Ter	p.Q1346*	ENST00000324856	NM_006015.4	1346	Caa/Taa																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498703	246498703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	133	429	0	ENST00000388985.4:c.302C>T	p.Ser101Phe	p.S101F	ENST00000388985		101	tCc/tTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410327	63410327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	88	535	0	ENST00000330258.3:c.2840C>T	p.Ser947Phe	p.S947F	ENST00000330258	NM_152424.3	947	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	33	228	0				ENST00000310581	NM_198253.2																																																																																
NEGR1	257194	MSKCC	GRCh37	1	72163772	72163772	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148707586		P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	69	452	0	ENST00000357731.5:c.586G>A	p.Asp196Asn	p.D196N	ENST00000357731	NM_173808.2	196	Gac/Aac																																																																														
RAD52	5893	MSKCC	GRCh37	12	1036377	1036377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	77	478	0	ENST00000358495.3:c.401C>T	p.Ser134Phe	p.S134F	ENST00000358495	NM_134424.2	134	tCc/tTc																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526441	66526441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	71	386	0	ENST00000358598.2:c.997C>T	p.Arg333Cys	p.R333C	ENST00000358598	NM_212471.2	333	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916950	178916950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	42	312	0	ENST00000263967.3:c.337C>T	p.Leu113Phe	p.L113F	ENST00000263967	NM_006218.2	113	Ctc/Ttc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047255	180047256	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	94	485	2	ENST00000261937.6:c.2459_2460delinsAA	p.Gly820Glu	p.G820E	ENST00000261937	NM_182925.4	820	gGG/gAA																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980752	70980753	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	36	366	0	ENST00000276594.2:c.715_716delinsTT	p.Pro239Phe	p.P239F	ENST00000276594	NM_024504.3	239	CCt/TTt																																																																														
TEK	7010	MSKCC	GRCh37	9	27213481	27213481	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0034370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	36	338	0	ENST00000380036.4:c.2878-1G>A		p.X960_splice	ENST00000380036	NM_000459.3	960																																																																															
CD79A	973	MSKCC	GRCh37	19	42381403	42381403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034514-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			568	229	792	0	ENST00000221972.3:c.29C>T	p.Ala10Val	p.A10V	ENST00000221972	NM_021601.3	10	gCt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720800	89720809	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTACTTTA	ACTTACTTTA	-			P-0034514-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			346	31	103	1	ENST00000371953.3:c.953_962del	p.Leu318GlnfsTer23	p.L318Qfs*23	ENST00000371953	NM_000314.4	317	gtACTTACTTTA/gt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	42	444	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65349019	65349019	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137855123		P-0034710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	123	461	0	ENST00000342505.4:c.146G>A	p.Arg49Gln	p.R49Q	ENST00000342505	NM_002227.2	49	cGg/cAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29679318	29679318	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	99	401	0	ENST00000358273.4:c.7501G>T	p.Glu2501Ter	p.E2501*	ENST00000358273	NM_001042492.2	2501	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76890179	76890179	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	79	442	0	ENST00000373344.5:c.4715G>C	p.Trp1572Ser	p.W1572S	ENST00000373344	NM_000489.3	1572	tGg/tCg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	61	800	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437596	52437597	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0034984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	74	721	0	ENST00000460680.1:c.1564_1565del	p.Pro522CysfsTer14	p.P522Cfs*14	ENST00000460680	NM_004656.3	522	CCt/t																																																																														
UPF1	5976	MSKCC	GRCh37	19	18960968	18960968	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	82	723	0	ENST00000262803.5:c.546G>C	p.Glu182Asp	p.E182D	ENST00000262803	NM_002911.3	182	gaG/gaC																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662769	227662769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	81	810	0	ENST00000305123.5:c.686C>T	p.Ala229Val	p.A229V	ENST00000305123	NM_005544.2	229	gCc/gTc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0035069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	249	745	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	154	266	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	10	311	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074204	8074204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	62	347	0	ENST00000377482.5:c.455C>T	p.Pro152Leu	p.P152L	ENST00000377482	NM_018948.3	152	cCt/cTt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075670	8075670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	57	417	0	ENST00000377482.5:c.10G>A	p.Ala4Thr	p.A4T	ENST00000377482	NM_018948.3	4	Gca/Aca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	184	683	0	ENST00000324856.7:c.2291C>T	p.Ser764Phe	p.S764F	ENST00000324856	NM_006015.4	764	tCc/tTc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932125	36932126	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	76	493	0	ENST00000361632.4:c.2343_2344delinsTT	p.Pro782Ser	p.P782S	ENST00000361632		781	acCCcc/acTTcc																																																																														
MPL	4352	MSKCC	GRCh37	1	43804269	43804269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	130	532	0	ENST00000372470.3:c.269G>A	p.Arg90Gln	p.R90Q	ENST00000372470	NM_005373.2	90	cGa/cAa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78426053	78426053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	90	481	0	ENST00000370768.2:c.1472C>T	p.Pro491Leu	p.P491L	ENST00000370768	NM_003902.3	491	cCt/cTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459215	120459215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	102	507	1	ENST00000256646.2:c.6130C>T	p.Arg2044Cys	p.R2044C	ENST00000256646	NM_024408.3	2044	Cgt/Tgt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111538	8111538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	180	502	0	ENST00000346208.3:c.1024G>A	p.Gly342Arg	p.G342R	ENST00000346208		342	Ggg/Agg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123276956	123276956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	33	273	0	ENST00000358487.5:c.961G>A	p.Asp321Asn	p.D321N	ENST00000358487	NM_000141.4	321	Gac/Aac																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310950	123310950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	95	452	0	ENST00000358487.5:c.478G>A	p.Glu160Lys	p.E160K	ENST00000358487	NM_000141.4	160	Gaa/Aaa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310974	123310974	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	73	390	0	ENST00000358487.5:c.455-1G>A		p.X152_splice	ENST00000358487	NM_000141.4	152																																																																															
WT1	7490	MSKCC	GRCh37	11	32439155	32439155	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	52	602	0	ENST00000332351.3:c.918G>A	p.Trp306Ter	p.W306*	ENST00000332351	NM_024426.4	306	tgG/tgA																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948777	71948778	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	156	836	1	ENST00000298229.2:c.3489_3490delCCinsTT	p.Arg1164Trp	p.R1164W	ENST00000298229	NM_001567.3	1163	ggCCgg/ggTTgg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377121	118377121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	64	316	0	ENST00000534358.1:c.10514C>T	p.Ser3505Phe	p.S3505F	ENST00000534358	NM_005933.3	3505	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435382	18435382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	18	268	0	ENST00000266497.5:c.367G>T	p.Glu123Ter	p.E123*	ENST00000266497		123	Gaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552778	18552778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	31	396	0	ENST00000266497.5:c.2189C>T	p.Ser730Phe	p.S730F	ENST00000266497		730	tCc/tTc																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944748	31944748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	26	153	0	ENST00000340398.3:c.353C>T	p.Thr118Ile	p.T118I	ENST00000340398	NM_001013699.2	118	aCc/aTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230679	46230679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	52	495	0	ENST00000334344.6:c.928C>T	p.Arg310Cys	p.R310C	ENST00000334344	NM_152641.2	310	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420841	49420841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	135	498	0	ENST00000301067.7:c.14908G>A	p.Glu4970Lys	p.E4970K	ENST00000301067	NM_003482.3	4970	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443622	49443622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	135	654	0	ENST00000301067.7:c.3749C>T	p.Pro1250Leu	p.P1250L	ENST00000301067	NM_003482.3	1250	cCa/cTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445541	49445541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	146	790	0	ENST00000301067.7:c.1925C>T	p.Ser642Leu	p.S642L	ENST00000301067	NM_003482.3	642	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445613	49445613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	233	972	2	ENST00000301067.7:c.1853C>T	p.Ser618Phe	p.S618F	ENST00000301067	NM_003482.3	618	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448353	49448353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	127	581	0	ENST00000301067.7:c.358T>C	p.Phe120Leu	p.F120L	ENST00000301067	NM_003482.3	120	Ttc/Ctc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481403	56481403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	194	665	0	ENST00000267101.3:c.590C>T	p.Pro197Leu	p.P197L	ENST00000267101	NM_001982.3	197	cCt/cTt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112910775	112910775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	60	397	0	ENST00000351677.2:c.784C>T	p.Leu262Phe	p.L262F	ENST00000351677	NM_002834.3	262	Ctc/Ttc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608247	28608247	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	56	643	0	ENST00000241453.7:c.1809G>A	p.Trp603Ter	p.W603*	ENST00000241453	NM_004119.2	603	tgG/tgA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893318	32893318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	29	365	0	ENST00000380152.3:c.172G>A	p.Glu58Lys	p.E58K	ENST00000380152		58	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915204	32915204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	33	568	0	ENST00000380152.3:c.6712G>A	p.Asp2238Asn	p.D2238N	ENST00000380152		2238	Gat/Aat																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023301	33023301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	148	702	0	ENST00000300177.4:c.410C>T	p.Ser137Phe	p.S137F	ENST00000300177	NM_001191322.1	137	tCc/tTc																																																																														
MGA	23269	MSKCC	GRCh37	15	41961408	41961408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	54	507	0	ENST00000219905.7:c.316C>T	p.Pro106Ser	p.P106S	ENST00000219905	NM_001164273.1	106	Cct/Tct																																																																														
MGA	23269	MSKCC	GRCh37	15	42028498	42028498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	57	471	0	ENST00000219905.7:c.4036G>A	p.Glu1346Lys	p.E1346K	ENST00000219905	NM_001164273.1	1346	Gaa/Aaa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66779586	66779586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	66	478	0	ENST00000307102.5:c.916C>T	p.Pro306Ser	p.P306S	ENST00000307102	NM_002755.3	306	Cct/Tct																																																																														
BLM	641	MSKCC	GRCh37	15	91308526	91308526	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	60	390	0	ENST00000355112.3:c.2075G>A	p.Gly692Glu	p.G692E	ENST00000355112	NM_000057.2	692	gGa/gAa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343582	343582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	187	823	2	ENST00000262320.3:c.2092C>T	p.His698Tyr	p.H698Y	ENST00000262320	NM_003502.3	698	Cac/Tac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857500	9857500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	84	468	0	ENST00000330684.3:c.3901G>A	p.Glu1301Lys	p.E1301K	ENST00000330684	NM_001134407.1	1301	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857692	9857692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1389208302		P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	80	471	0	ENST00000330684.3:c.3709G>A	p.Asp1237Asn	p.D1237N	ENST00000330684	NM_001134407.1	1237	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934842	9934842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	57	557	0	ENST00000330684.3:c.1448G>A	p.Gly483Glu	p.G483E	ENST00000330684	NM_001134407.1	483	gGg/gAg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647529	23647529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	68	723	0	ENST00000261584.4:c.338C>T	p.Pro113Leu	p.P113L	ENST00000261584	NM_024675.3	113	cCa/cTa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50788299	50788299	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	76	766	0	ENST00000398568.2:c.877A>C	p.Ser293Arg	p.S293R	ENST00000398568	NM_001042412.1	293	Agt/Cgt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50815298	50815298	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	127	560	0	ENST00000398568.2:c.1651C>T	p.Gln551Ter	p.Q551*	ENST00000398568	NM_001042412.1	551	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821470	72821471	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	131	639	0	ENST00000268489.5:c.10704_10705delinsTT	p.Pro3569Ser	p.P3569S	ENST00000268489	NM_006885.3	3568	caCCct/caTTct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577068	7577070	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	CA			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	204	726	2	ENST00000269305.4:c.868_870delinsTG	p.Arg290Ter	p.R290*	ENST00000269305	NM_001126112.2	290	CGC/TG																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	160	654	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131264	17131265	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	244	802	1	ENST00000285071.4:c.187_188delinsTT	p.Pro63Phe	p.P63F	ENST00000285071	NM_144997.5	63	CCc/TTc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40858062	40858062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	164	674	1	ENST00000428826.2:c.1802C>T	p.Ser601Phe	p.S601F	ENST00000428826		601	tCc/tTc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45394723	45394723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	81	408	0	ENST00000262160.6:c.626G>A	p.Gly209Glu	p.G209E	ENST00000262160	NM_005901.5	209	gGa/gAa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56400713	56400713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	52	311	0	ENST00000348428.3:c.1307C>T	p.Ser436Phe	p.S436F	ENST00000348428	NM_006785.3	436	tCt/tTt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217785	2217788	+	frameshift_variant	Frame_Shift_Del	DEL	CGCC	CGCC	TCT			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	149	691	2	ENST00000398665.3:c.2559_2562delinsTCT	p.Ala854LeufsTer214	p.A854Lfs*214	ENST00000398665	NM_032482.2	853	cgCGCC/cgTCT																																																																														
INSR	3643	MSKCC	GRCh37	19	7174603	7174603	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	119	535	0	ENST00000302850.5:c.1114C>T	p.Arg372Ter	p.R372*	ENST00000302850	NM_000208.2	372	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302774	15302774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	126	669	0	ENST00000263388.2:c.676C>T	p.Pro226Ser	p.P226S	ENST00000263388	NM_000435.2	226	Cct/Tct																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976220	18976220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	140	725	1	ENST00000262803.5:c.2980C>T	p.Pro994Ser	p.P994S	ENST00000262803	NM_002911.3	994	Ccg/Tcg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794473	42794473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	244	893	0	ENST00000575354.2:c.1553C>T	p.Pro518Leu	p.P518L	ENST00000575354	NM_015125.3	518	cCg/cTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797952	42797952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	200	802	1	ENST00000575354.2:c.4004C>T	p.Pro1335Leu	p.P1335L	ENST00000575354	NM_015125.3	1335	cCc/cTc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716064	52716064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	205	864	0	ENST00000322088.6:c.629C>T	p.Ser210Phe	p.S210F	ENST00000322088	NM_014225.5	210	tCc/tTc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716281	52716281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	166	613	0	ENST00000322088.6:c.725C>T	p.Ala242Val	p.A242V	ENST00000322088	NM_014225.5	242	gCc/gTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464538	25464539	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	135	700	1	ENST00000264709.3:c.1974_1975delinsTT	p.Arg659Cys	p.R659C	ENST00000264709	NM_175629.2	658	gaCCgc/gaTTgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25497897	25497898	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	110	515	2	ENST00000264709.3:c.551_552delinsTT	p.Pro184Leu	p.P184L	ENST00000264709	NM_175629.2	184	cCC/cTT																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965859	25965859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	121	613	0	ENST00000435504.4:c.3347C>T	p.Ser1116Phe	p.S1116F	ENST00000435504		1116	tCc/tTc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26029127	26029127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	34	433	0	ENST00000435504.4:c.223C>T	p.Pro75Ser	p.P75S	ENST00000435504		75	Cca/Tca																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872503	136872503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	56	299	0	ENST00000241393.3:c.995G>A	p.Gly332Glu	p.G332E	ENST00000241393	NM_003467.2	332	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212568836	212568836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	44	456	0	ENST00000342788.4:c.1282C>T	p.Leu428Phe	p.L428F	ENST00000342788	NM_005235.2	428	Ctc/Ttc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812293	212812293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	38	289	0	ENST00000342788.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000342788	NM_005235.2	95	Cgt/Tgt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662506	227662506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	88	505	0	ENST00000305123.5:c.949G>A	p.Val317Met	p.V317M	ENST00000305123	NM_005544.2	317	Gtg/Atg																																																																														
SRC	6714	MSKCC	GRCh37	20	36031230	36031230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	173	612	0	ENST00000358208.4:c.1349C>T	p.Ser450Phe	p.S450F	ENST00000358208		450	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944523	40944523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	104	511	0	ENST00000373198.4:c.1979C>T	p.Ser660Phe	p.S660F	ENST00000373198	NM_133170.3	660	tCt/tTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306689	41306689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	145	659	0	ENST00000373198.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000373198	NM_133170.3	324	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385212	41385212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	119	627	0	ENST00000373198.4:c.749C>T	p.Ala250Val	p.A250V	ENST00000373198	NM_133170.3	250	gCc/gTc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42851168	42851168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	45	597	0	ENST00000398585.3:c.725G>A	p.Gly242Glu	p.G242E	ENST00000398585	NM_001135099.1	242	gGa/gAa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42860327	42860327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	149	493	0	ENST00000398585.3:c.550C>T	p.Arg184Trp	p.R184W	ENST00000398585	NM_001135099.1	184	Cgg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41521995	41521995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	55	547	0	ENST00000263253.7:c.857C>T	p.Pro286Leu	p.P286L	ENST00000263253	NM_001429.3	286	cCa/cTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47059133	47059133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	104	510	0	ENST00000409792.3:c.7528C>T	p.Arg2510Cys	p.R2510C	ENST00000409792	NM_014159.6	2510	Cgc/Tgc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165249	47165249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	33	492	0	ENST00000409792.3:c.877C>T	p.Pro293Ser	p.P293S	ENST00000409792	NM_014159.6	293	Cca/Tca																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247492	71247492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	129	587	0	ENST00000318789.4:c.41C>T	p.Ser14Leu	p.S14L	ENST00000318789	NM_032682.5	14	tCa/tTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480306	89480306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	19	261	0	ENST00000336596.2:c.2143G>A	p.Asp715Asn	p.D715N	ENST00000336596	NM_005233.5	715	Gat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498375	89498375	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	29	222	0	ENST00000336596.2:c.2347G>A	p.Gly783Arg	p.G783R	ENST00000336596	NM_005233.5	783	Gga/Aga																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374251	138374251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	72	559	0	ENST00000289153.2:c.3193C>T	p.Arg1065Trp	p.R1065W	ENST00000289153	NM_006219.2	1065	Cgg/Tgg																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504403	186504403	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	30	534	0	ENST00000323963.5:c.740T>G	p.Ile247Ser	p.I247S	ENST00000323963		247	aTc/aGc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747900	41747900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	49	520	2	ENST00000226382.2:c.869C>T	p.Pro290Leu	p.P290L	ENST00000226382	NM_003924.3	290	cCc/cTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593586	55593586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	35	387	0	ENST00000288135.5:c.1652C>T	p.Pro551Leu	p.P551L	ENST00000288135	NM_000222.2	551	cCc/cTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955863	55955863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868047715		P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	56	337	0	ENST00000263923.4:c.3299C>T	p.Ser1100Phe	p.S1100F	ENST00000263923	NM_002253.2	1100	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55961796	55961796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	55	436	0	ENST00000263923.4:c.2765G>A	p.Gly922Glu	p.G922E	ENST00000263923	NM_002253.2	922	gGa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1294121	1294121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1621	182	997	0	ENST00000310581.5:c.880C>T	p.His294Tyr	p.H294Y	ENST00000310581	NM_198253.2	294	Cac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295196	1295196	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	276	339	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	413	474	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35861085	35861085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	178	420	0	ENST00000303115.3:c.214G>A	p.Glu72Lys	p.E72K	ENST00000303115	NM_002185.3	72	Gaa/Aaa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874636	35874636	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	61	449	0	ENST00000303115.3:c.792G>A	p.Trp264Ter	p.W264*	ENST00000303115	NM_002185.3	264	tgG/tgA																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520326	176520327	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	148	655	1	ENST00000292408.4:c.1245_1246delinsTT	p.Arg416Ter	p.R416*	ENST00000292408	NM_213647.1	415	gcCCga/gcTTga																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672029	30672029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	144	797	0	ENST00000376406.3:c.4931G>A	p.Arg1644Lys	p.R1644K	ENST00000376406	NM_014641.2	1644	aGg/aAg																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	158	764	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
STK19	8859	MSKCC	GRCh37	6	31948254	31948255	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	140	688	1	ENST00000375331.2:c.830_831delinsTT	p.Thr277Ile	p.T277I	ENST00000375331	NM_004197.1	277	aCC/aTT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956573	93956573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	48	445	0	ENST00000369303.4:c.2663G>A	p.Gly888Glu	p.G888E	ENST00000369303	NM_004440.3	888	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979282	93979282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	45	425	0	ENST00000369303.4:c.1546C>T	p.Arg516Trp	p.R516W	ENST00000369303	NM_004440.3	516	Cgg/Tgg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120360	94120360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	59	296	0	ENST00000369303.4:c.691C>T	p.Arg231Ter	p.R231*	ENST00000369303	NM_004440.3	231	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521873	157521873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	97	386	0	ENST00000346085.5:c.4145C>T	p.Pro1382Leu	p.P1382L	ENST00000346085	NM_020732.3	1382	cCc/cTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987263	2987263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	103	640	0	ENST00000396946.4:c.166G>A	p.Asp56Asn	p.D56N	ENST00000396946	NM_032415.4	56	Gat/Aat																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467750	50467750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	123	480	0	ENST00000331340.3:c.985C>T	p.Pro329Ser	p.P329S	ENST00000331340	NM_006060.4	329	Ccg/Tcg																																																																														
SMO	6608	MSKCC	GRCh37	7	128852129	128852130	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	299	866	1	ENST00000249373.3:c.2201_2202delinsTT	p.Ser734Phe	p.S734F	ENST00000249373	NM_005631.4	734	tCC/tTT																																																																														
SMO	6608	MSKCC	GRCh37	7	128852146	128852146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	194	880	0	ENST00000249373.3:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000249373	NM_005631.4	740	Gag/Aag																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29197742	29197742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	202	827	0	ENST00000240100.2:c.452C>T	p.Ser151Phe	p.S151F	ENST00000240100	NM_001394.6	151	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68939506	68939506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	18	431	0	ENST00000288368.4:c.491G>A	p.Gly164Glu	p.G164E	ENST00000288368	NM_024870.2	164	gGa/gAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992719	68992719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	48	636	0	ENST00000288368.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000288368	NM_024870.2	562	Cgt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046410	69046410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	117	543	0	ENST00000288368.4:c.3883G>A	p.Glu1295Lys	p.E1295K	ENST00000288368	NM_024870.2	1295	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058575	69058575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	80	702	0	ENST00000288368.4:c.4219C>T	p.Leu1407Phe	p.L1407F	ENST00000288368	NM_024870.2	1407	Ctt/Ttt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742986	145742986	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	89	185	0	ENST00000428558.2:c.118G>A	p.Ala40Thr	p.A40T	ENST00000428558	NM_004260.3	40	Gcg/Acg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317921	8317921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	37	395	1	ENST00000356435.5:c.5692C>T	p.Arg1898Cys	p.R1898C	ENST00000356435		1898	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528596	8528596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	30	327	0	ENST00000356435.5:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000356435		179	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528705	8528706	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	56	347	1	ENST00000356435.5:c.426_427delinsAC	p.Ala143Pro	p.A143P	ENST00000356435		142	acGGcc/acACcc																																																																														
SYK	6850	MSKCC	GRCh37	9	93629441	93629441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	64	355	0	ENST00000375746.1:c.875G>T	p.Arg292Ile	p.R292I	ENST00000375746	NM_001174167.1	292	aGa/aTa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	163	698	0	ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391340	139391340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	294	834	2	ENST00000277541.6:c.6851C>T	p.Thr2284Ile	p.T2284I	ENST00000277541	NM_017617.3	2284	aCc/aTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938668	76938668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	46	365	0	ENST00000373344.5:c.2080C>T	p.Pro694Ser	p.P694S	ENST00000373344	NM_000489.3	694	Cca/Tca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528705	8528705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	54	348	0	ENST00000356435.5:c.427G>C	p.Ala143Pro	p.A143P	ENST00000356435		143	Gcc/Ccc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852129	128852129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	299	865	1	ENST00000249373.3:c.2201C>T	p.Ser734Phe	p.S734F	ENST00000249373	NM_005631.4	734	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709162	117709162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	71	463	0	ENST00000368508.3:c.1795G>A	p.Glu599Lys	p.E599K	ENST00000368508	NM_002944.2	599	Gaa/Aaa																																																																														
AKT2	208	MSKCC	GRCh37	19	40743950	40743950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	85	623	0	ENST00000392038.2:c.757C>T	p.Arg253Trp	p.R253W	ENST00000392038	NM_001626.4	253	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	137	428	0	ENST00000288602.6:c.1790T>G	p.Leu597Arg	p.L597R	ENST00000288602	NM_004333.4	597	cTa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	242	862	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923335	9923335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	115	631	2	ENST00000330684.3:c.1952C>T	p.Ala651Val	p.A651V	ENST00000330684	NM_001134407.1	651	gCc/gTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285682	46285682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	113	500	0	ENST00000334344.6:c.5042C>T	p.Ser1681Phe	p.S1681F	ENST00000334344	NM_152641.2	1681	tCt/tTt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962858	2962858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	101	782	0	ENST00000396946.4:c.2050G>A	p.Gly684Arg	p.G684R	ENST00000396946	NM_032415.4	684	Ggg/Agg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411267	63411267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	139	878	0	ENST00000330258.3:c.1900C>T	p.Arg634Cys	p.R634C	ENST00000330258	NM_152424.3	634	Cgt/Tgt																																																																														
BLM	641	MSKCC	GRCh37	15	91312713	91312713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	81	405	0	ENST00000355112.3:c.2452C>T	p.Arg818Cys	p.R818C	ENST00000355112	NM_000057.2	818	Cgc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576880	212576880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	64	458	1	ENST00000342788.4:c.1019G>A	p.Gly340Glu	p.G340E	ENST00000342788	NM_005235.2	340	gGa/gAa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284946	15284946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	228	844	1	ENST00000263388.2:c.4669C>T	p.Pro1557Ser	p.P1557S	ENST00000263388	NM_000435.2	1557	Cct/Tct																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509774	106509774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	153	626	0	ENST00000359195.3:c.1768C>T	p.Pro590Ser	p.P590S	ENST00000359195	NM_002649.2	590	Cct/Tct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93968002	93968002	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	87	431	0	ENST00000369303.4:c.1925G>A	p.Gly642Glu	p.G642E	ENST00000369303	NM_004440.3	642	gGa/gAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189608604	189608604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	140	717	0	ENST00000264731.3:c.1679C>T	p.Ser560Leu	p.S560L	ENST00000264731	NM_003722.4	560	tCa/tTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139895	55139895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	56	295	0	ENST00000257290.5:c.1556C>T	p.Pro519Leu	p.P519L	ENST00000257290	NM_006206.4	519	cCc/cTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11135098	11135098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	118	860	0	ENST00000344626.4:c.3065C>T	p.Ser1022Phe	p.S1022F	ENST00000344626	NM_003072.3	1022	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612211	189612211	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	165	530	1	ENST00000264731.3:c.1963C>T	p.Arg655Ter	p.R655*	ENST00000264731	NM_003722.4	655	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685305	89685305	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	60	381	0	ENST00000371953.3:c.200T>A	p.Ile67Lys	p.I67K	ENST00000371953	NM_000314.4	67	aTa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	37	387	0				ENST00000310581	NM_198253.2																																																																																
SPEN	23013	MSKCC	GRCh37	1	16237728	16237728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	116	607	1	ENST00000375759.3:c.1175C>T	p.Ala392Val	p.A392V	ENST00000375759	NM_015001.2	392	gCc/gTc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163784	72163784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	66	641	0	ENST00000357731.5:c.574G>A	p.Gly192Arg	p.G192R	ENST00000357731	NM_173808.2	192	Gga/Aga																																																																														
RET	5979	MSKCC	GRCh37	10	43615008	43615008	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	71	616	0	ENST00000355710.3:c.2422A>G	p.Lys808Glu	p.K808E	ENST00000355710	NM_020975.4	808	Aaa/Gaa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925340	114925340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	84	616	0	ENST00000543371.1:c.1418T>C	p.Ile473Thr	p.I473T	ENST00000543371	NM_001198531.1	473	aTa/aCa																																																																														
PGR	5241	MSKCC	GRCh37	11	100998444	100998444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	53	345	0	ENST00000325455.5:c.1358C>A	p.Ser453Tyr	p.S453Y	ENST00000325455	NM_001202474.3	453	tCc/tAc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998544	100998544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	65	577	0	ENST00000325455.5:c.1258G>A	p.Gly420Arg	p.G420R	ENST00000325455	NM_001202474.3	420	Ggg/Agg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376188	118376188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	95	552	0	ENST00000534358.1:c.9581C>T	p.Pro3194Leu	p.P3194L	ENST00000534358	NM_005933.3	3194	cCt/cTt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	420092	420092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	144	607	1	ENST00000399788.2:c.3175C>T	p.Arg1059Trp	p.R1059W	ENST00000399788	NM_001042603.1	1059	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446008	49446009	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	158	1097	1	ENST00000301067.7:c.1457_1458delinsTT	p.Ser486Phe	p.S486F	ENST00000301067	NM_003482.3	486	tCC/tTT																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121437430	121437430	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	75	482	0	ENST00000257555.6:c.1768G>A	p.Val590Met	p.V590M	ENST00000257555		590	Gtg/Atg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28919626	28919626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	316	568	1	ENST00000282397.4:c.2311C>T	p.Leu771Phe	p.L771F	ENST00000282397	NM_002019.4	771	Ctc/Ttc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562313	95562313	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	100	485	0	ENST00000343455.3:c.4944T>A	p.Cys1648Ter	p.C1648*	ENST00000343455	NM_177438.2	1648	tgT/tgA																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020438	14020438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	94	452	0	ENST00000311895.7:c.409C>T	p.His137Tyr	p.H137Y	ENST00000311895	NM_005236.2	137	Cac/Tac																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66511694	66511695	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AATA			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	112	423	0	ENST00000358598.2:c.155_158dup	p.Tyr53Ter	p.Y53*	ENST00000358598	NM_212471.2	52	gaa/gAATAaa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4101103	4101104	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	119	453	1	ENST00000262948.5:c.618_619delinsAA	p.Glu207Lys	p.E207K	ENST00000262948	NM_030662.3	206	ggGGag/ggAAag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231498	5231498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	123	668	0	ENST00000357368.4:c.1978C>T	p.Pro660Ser	p.P660S	ENST00000357368	NM_002850.3	660	Ccg/Tcg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288748	15288748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	10	59	0	ENST00000263388.2:c.3991C>T	p.Pro1331Ser	p.P1331S	ENST00000263388	NM_000435.2	1331	Ccg/Tcg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366147	15366147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	132	716	0	ENST00000263377.2:c.2008T>C	p.Tyr670His	p.Y670H	ENST00000263377	NM_058243.2	670	Tat/Cat																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366227	15366227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	236	875	2	ENST00000263377.2:c.1928C>T	p.Ser643Phe	p.S643F	ENST00000263377	NM_058243.2	643	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213599	36213599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	126	902	4	ENST00000222270.7:c.2701C>T	p.Arg901Trp	p.R901W	ENST00000222270	NM_014727.1	901	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100933	41100933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	98	596	0	ENST00000373198.4:c.1423G>A	p.Glu475Lys	p.E475K	ENST00000373198	NM_133170.3	475	Gag/Aag																																																																														
PPARG	5468	MSKCC	GRCh37	3	12422928	12422928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	146	769	1	ENST00000287820.6:c.418C>T	p.Arg140Cys	p.R140C	ENST00000287820	NM_015869.4	140	Cgt/Tgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165786	47165786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	116	677	1	ENST00000409792.3:c.340C>T	p.Pro114Ser	p.P114S	ENST00000409792	NM_014159.6	114	Cct/Tct																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643668	52643668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	125	665	0	ENST00000394830.3:c.2228C>T	p.Ser743Phe	p.S743F	ENST00000394830	NM_018313.4	743	tCt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916849	178916850	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	103	743	3	ENST00000263967.3:c.236_237delinsAA	p.Arg79Lys	p.R79K	ENST00000263967	NM_006218.2	79	aGG/aAA																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185184640	185184640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	59	328	0	ENST00000265026.3:c.1532A>G	p.Tyr511Cys	p.Y511C	ENST00000265026	NM_004721.4	511	tAt/tGt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143181667	143181667	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	102	497	0	ENST00000262992.4:c.666T>A	p.Asp222Glu	p.D222E	ENST00000262992	NM_001101669.1	222	gaT/gaA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38947428	38947428	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	86	368	0	ENST00000357387.3:c.4252T>A	p.Tyr1418Asn	p.Y1418N	ENST00000357387	NM_152756.3	1418	Tat/Aat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38952447	38952447	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	79	415	0	ENST00000357387.3:c.2978T>G	p.Val993Gly	p.V993G	ENST00000357387	NM_152756.3	993	gTg/gGg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564516	86564516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	79	611	0	ENST00000274376.6:c.248G>T	p.Gly83Val	p.G83V	ENST00000274376	NM_002890.2	83	gGa/gTa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497200	149497200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	105	624	0	ENST00000261799.4:c.3118G>A	p.Gly1040Ser	p.G1040S	ENST00000261799	NM_002609.3	1040	Ggt/Agt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057743	180057743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	87	701	0	ENST00000261937.6:c.212G>A	p.Gly71Glu	p.G71E	ENST00000261937	NM_182925.4	71	gGa/gAa																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140885	37140885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	127	612	0	ENST00000373509.5:c.721C>T	p.Pro241Ser	p.P241S	ENST00000373509	NM_002648.3	241	Cct/Tct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93973593	93973593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	51	443	0	ENST00000369303.4:c.1783G>A	p.Glu595Lys	p.E595K	ENST00000369303	NM_004440.3	595	Gag/Aag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068007	94068008	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	39	320	1	ENST00000369303.4:c.954_955delinsAA	p.Ala319Thr	p.A319T	ENST00000369303	NM_004440.3	318	agGGct/agAAct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658349	117658349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	128	1011	0	ENST00000368508.3:c.5234G>A	p.Ser1745Asn	p.S1745N	ENST00000368508	NM_002944.2	1745	aGc/aAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715366	117715366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	66	424	1	ENST00000368508.3:c.1123G>A	p.Asp375Asn	p.D375N	ENST00000368508	NM_002944.2	375	Gat/Aat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099340	157099340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	39	282	0	ENST00000346085.5:c.277C>T	p.His93Tyr	p.H93Y	ENST00000346085	NM_020732.3	93	Cac/Tac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949069	151949069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	102	630	1	ENST00000262189.6:c.1576C>T	p.Arg526Cys	p.R526C	ENST00000262189	NM_170606.2	526	Cgt/Tgt																																																																														
LYN	4067	MSKCC	GRCh37	8	56863311	56863311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	92	567	0	ENST00000519728.1:c.455C>T	p.Ala152Val	p.A152V	ENST00000519728	NM_002350.3	152	gCt/gTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68934289	68934289	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	78	596	0	ENST00000288368.4:c.355T>C	p.Tyr119His	p.Y119H	ENST00000288368	NM_024870.2	119	Tat/Cat																																																																														
BTK	695	MSKCC	GRCh37	X	100626640	100626640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	106	575	0	ENST00000308731.7:c.290G>T	p.Arg97Met	p.R97M	ENST00000308731	NM_000061.2	97	aGg/aTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	107	791	1	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	107	791	1	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	107	791	1	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
KDR	3791	MSKCC	GRCh37	4	55964427	55964429	+	missense_variant	Missense_Mutation	ONP	CCC	CCC	TCT			P-0035974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	69	472	2	ENST00000263923.4:c.2384_2386delinsAGA	p.Gly795_Glu796delinsGluLys	p.G795_E796delinsEK	ENST00000263923	NM_002253.2	795	gGGGaa/gAGAaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	43	376	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
XIAP	331	MSKCC	GRCh37	X	123020291	123020291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	32	371	3	ENST00000355640.3:c.779C>T	p.Pro260Leu	p.P260L	ENST00000355640		260	cCa/cTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	69	512	0				ENST00000310581	NM_198253.2																																																																																
MTOR	2475	MSKCC	GRCh37	1	11316164	11316164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	43	635	1	ENST00000361445.4:c.590C>T	p.Ala197Val	p.A197V	ENST00000361445	NM_004958.3	197	gCc/gTc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932883	36932883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	134	876	6	ENST00000361632.4:c.1988C>T	p.Pro663Leu	p.P663L	ENST00000361632		663	cCa/cTa																																																																														
EED	8726	MSKCC	GRCh37	11	85989478	85989478	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	49	605	0	ENST00000263360.6:c.1237A>T	p.Ile413Phe	p.I413F	ENST00000263360	NM_003797.3	413	Att/Ttt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111884837	111884837	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	29	434	0	ENST00000341259.2:c.926G>A	p.Gly309Glu	p.G309E	ENST00000341259	NM_005475.2	309	gGg/gAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295717	15295717	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	56	735	0	ENST00000263388.2:c.2410G>A	p.Gly804Ser	p.G804S	ENST00000263388	NM_000435.2	804	Ggc/Agc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955170	93955170	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	18	499	0	ENST00000369303.4:c.2728C>T	p.Pro910Ser	p.P910S	ENST00000369303	NM_004440.3	910	Cca/Tca																																																																														
EZH2	2146	MSKCC	GRCh37	7	148543560	148543560	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	48	474	0	ENST00000320356.2:c.246+2T>C		p.X82_splice	ENST00000320356	NM_004456.4	82																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599275	28599275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	87	758	1	ENST00000253063.3:c.721C>T	p.Pro241Ser	p.P241S	ENST00000253063	NM_031459.4	241	Cca/Tca																																																																														
MPL	4352	MSKCC	GRCh37	1	43804298	43804298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	39	549	0	ENST00000372470.3:c.298G>A	p.Glu100Lys	p.E100K	ENST00000372470	NM_005373.2	100	Gaa/Aaa																																																																														
MCL1	4170	MSKCC	GRCh37	1	150550733	150550733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	23	371	0	ENST00000369026.2:c.923A>G	p.Lys308Arg	p.K308R	ENST00000369026	NM_021960.4	308	aAa/aGa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850894	63850894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	34	398	0	ENST00000279873.7:c.1672G>A	p.Gly558Arg	p.G558R	ENST00000279873	NM_032199.2	558	Ggg/Agg																																																																														
TET1	80312	MSKCC	GRCh37	10	70426846	70426847	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	39	400	0	ENST00000373644.4:c.4506_4507delinsTT	p.Arg1503Trp	p.R1503W	ENST00000373644	NM_030625.2	1502	gtCCgg/gtTTgg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195467	102195467	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	11	359	0	ENST00000263464.3:c.227G>C	p.Trp76Ser	p.W76S	ENST00000263464	NM_001165.4	76	tGg/tCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434337	49434337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	55	761	0	ENST00000301067.7:c.7216G>T	p.Asp2406Tyr	p.D2406Y	ENST00000301067	NM_003482.3	2406	Gac/Tac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437990	49437991	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	53	551	0	ENST00000301067.7:c.5180_5181delinsTT	p.Pro1727Leu	p.P1727L	ENST00000301067	NM_003482.3	1727	cCC/cTT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444704	49444705	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	58	734	1	ENST00000301067.7:c.2761_2762delinsAT	p.Gly921Met	p.G921M	ENST00000301067	NM_003482.3	921	GGg/ATg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865062	57865062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	74	804	2	ENST00000228682.2:c.2539C>T	p.Leu847Phe	p.L847F	ENST00000228682	NM_005269.2	847	Ctc/Ttc																																																																														
POLE	5426	MSKCC	GRCh37	12	133257231	133257231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	18	524	0	ENST00000320574.5:c.247G>A	p.Asp83Asn	p.D83N	ENST00000320574	NM_006231.2	83	Gat/Aat																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614451	38614451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	14	464	0	ENST00000299084.4:c.217G>A	p.Glu73Lys	p.E73K	ENST00000299084	NM_152594.2	73	Gaa/Aaa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43767822	43767823	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	46	494	0	ENST00000382044.4:c.1025_1026delinsTT	p.Thr342Ile	p.T342I	ENST00000382044	NM_001141980.1	342	aCC/aTT																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782314	56782314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	47	471	0	ENST00000308159.5:c.155C>T	p.Ser52Phe	p.S52F	ENST00000308159	NM_014669.4	52	tCc/tTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350377	89350377	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	49	808	0	ENST00000301030.4:c.2573G>A	p.Trp858Ter	p.W858*	ENST00000301030	NM_001256183.1	858	tGg/tAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29654857	29654857	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	19	237	0	ENST00000358273.4:c.5609G>A	p.Arg1870Gln	p.R1870Q	ENST00000358273	NM_001042492.2	1870	cGg/cAg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884011	37884011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150680317		P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	80	699	1	ENST00000269571.5:c.3482G>A	p.Arg1161Gln	p.R1161Q	ENST00000269571		1161	cGa/cAa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78867539	78867539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	77	515	0	ENST00000306801.3:c.2275C>T	p.Leu759Phe	p.L759F	ENST00000306801	NM_020761.2	759	Ctc/Ttc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78923306	78923306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	63	523	0	ENST00000306801.3:c.3329C>T	p.Thr1110Ile	p.T1110I	ENST00000306801	NM_020761.2	1110	aCc/aTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7117183	7117183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	68	642	1	ENST00000302850.5:c.4033G>A	p.Gly1345Arg	p.G1345R	ENST00000302850	NM_000208.2	1345	Gga/Aga																																																																														
INSR	3643	MSKCC	GRCh37	19	7142994	7142994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	59	640	0	ENST00000302850.5:c.2375C>T	p.Pro792Leu	p.P792L	ENST00000302850	NM_000208.2	792	cCg/cTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955096	17955096	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201650430		P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	69	700	0	ENST00000458235.1:c.131C>T	p.Ser44Phe	p.S44F	ENST00000458235	NM_000215.3	44	tCc/tTc																																																																														
AKT2	208	MSKCC	GRCh37	19	40743959	40743959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	65	466	0	ENST00000392038.2:c.748G>A	p.Glu250Lys	p.E250K	ENST00000392038	NM_001626.4	250	Gag/Aag																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140363	50140363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	51	426	0	ENST00000246792.3:c.178C>T	p.Pro60Ser	p.P60S	ENST00000246792	NM_006270.3	60	Ccc/Tcc																																																																														
ALK	238	MSKCC	GRCh37	2	29416745	29416745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	35	344	0	ENST00000389048.3:c.4208C>T	p.Pro1403Leu	p.P1403L	ENST00000389048	NM_004304.4	1403	cCa/cTa																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736158	204736158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	24	459	1	ENST00000302823.3:c.515C>T	p.Ser172Leu	p.S172L	ENST00000302823	NM_005214.4	172	tCg/tTg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376178	225376178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	22	695	0	ENST00000264414.4:c.776C>T	p.Pro259Leu	p.P259L	ENST00000264414	NM_003590.4	259	cCa/cTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727090	40727090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	50	496	0	ENST00000373198.4:c.3874G>A	p.Val1292Met	p.V1292M	ENST00000373198	NM_133170.3	1292	Gtg/Atg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770557	40770557	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	33	451	0	ENST00000373198.4:c.2825C>T	p.Ser942Phe	p.S942F	ENST00000373198	NM_133170.3	942	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877330	40877330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	28	381	0	ENST00000373198.4:c.2366G>A	p.Arg789Lys	p.R789K	ENST00000373198	NM_133170.3	789	aGg/aAg																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181441	38181441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	62	397	0	ENST00000396334.3:c.454C>T	p.Pro152Ser	p.P152S	ENST00000396334	NM_002468.4	152	Cca/Tca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584608	52584608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	46	552	0	ENST00000394830.3:c.4405C>A	p.Pro1469Thr	p.P1469T	ENST00000394830	NM_018313.4	1469	Ccc/Acc																																																																														
ATR	545	MSKCC	GRCh37	3	142176561	142176561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	18	414	0	ENST00000350721.4:c.7540C>T	p.Arg2514Cys	p.R2514C	ENST00000350721	NM_001184.3	2514	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	37	331	1				ENST00000310581	NM_198253.2																																																																																
MDC1	9656	MSKCC	GRCh37	6	30671754	30671754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	43	636	0	ENST00000376406.3:c.5206C>T	p.Pro1736Ser	p.P1736S	ENST00000376406	NM_014641.2	1736	Ccc/Tcc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663685	117663685	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	11	387	0	ENST00000368508.3:c.4547T>C	p.Leu1516Pro	p.L1516P	ENST00000368508	NM_002944.2	1516	cTt/cCt																																																																														
MET	4233	MSKCC	GRCh37	7	116411592	116411592	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	12	472	0	ENST00000397752.3:c.2771T>C	p.Ile924Thr	p.I924T	ENST00000397752	NM_000245.2	924	aTa/aCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	9	266	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
EZH2	2146	MSKCC	GRCh37	7	148508776	148508776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	16	408	0	ENST00000320356.2:c.1888G>A	p.Gly630Arg	p.G630R	ENST00000320356	NM_004456.4	630	Ggg/Agg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38173538	38173539	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	12	479	1	ENST00000317025.8:c.1877_1878delinsTT	p.Ser626Phe	p.S626F	ENST00000317025	NM_023034.1	626	tCC/tTT																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030808	69030808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	41	340	0	ENST00000288368.4:c.3350C>T	p.Ser1117Phe	p.S1117F	ENST00000288368	NM_024870.2	1117	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033228	69033228	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	14	448	0	ENST00000288368.4:c.3668G>A	p.Trp1223Ter	p.W1223*	ENST00000288368	NM_024870.2	1223	tGg/tAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471053	8471053	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	24	376	0	ENST00000356435.5:c.3446A>T	p.Lys1149Ile	p.K1149I	ENST00000356435		1149	aAa/aTa																																																																														
TEK	7010	MSKCC	GRCh37	9	27157900	27157900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	74	587	0	ENST00000380036.4:c.124C>T	p.Leu42Phe	p.L42F	ENST00000380036	NM_000459.3	42	Ctc/Ttc																																																																														
TEK	7010	MSKCC	GRCh37	9	27185489	27185489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	31	447	1	ENST00000380036.4:c.1189G>A	p.Asp397Asn	p.D397N	ENST00000380036	NM_000459.3	397	Gac/Aac																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779088	135779089	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	44	399	0	ENST00000298552.3:c.2157_2158delinsTT	p.Leu720Phe	p.L720F	ENST00000298552	NM_001162426.1	719	ctCCtc/ctTTtc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044763	47044764	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	53	370	1	ENST00000329236.7:c.1929_1930delinsTT	p.Pro644Ser	p.P644S	ENST00000329236	NM_001204466.1	643	cgCCca/cgTTca																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860031	152860031	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	44	242	0	ENST00000406277.2:c.397C>T	p.Gln133Ter	p.Q133*	ENST00000406277	NM_152274.4	133	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199514	16199514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	62	478	0	ENST00000375759.3:c.287C>T	p.Ser96Phe	p.S96F	ENST00000375759	NM_015001.2	96	tCc/tTc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68352692	68352692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	45	424	0	ENST00000487270.1:c.559G>A	p.Glu187Lys	p.E187K	ENST00000487270	NM_133509.3	187	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3831298	3831298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	56	378	0	ENST00000262367.5:c.1583C>T	p.Pro528Leu	p.P528L	ENST00000262367	NM_004380.2	528	cCa/cTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347285	89347285	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs202034147		P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	88	619	0	ENST00000301030.4:c.5665A>G	p.Lys1889Glu	p.K1889E	ENST00000301030	NM_001256183.1	1889	Aaa/Gaa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40855800	40855800	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	75	550	0	ENST00000428826.2:c.2056C>T	p.Arg686Ter	p.R686*	ENST00000428826		686	Cga/Tga																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732283	74732283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	55	263	0	ENST00000359995.5:c.626C>T	p.Pro209Leu	p.P209L	ENST00000359995	NM_001195427.1	209	cCc/cTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9520177	9520177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	81	452	0	ENST00000353224.5:c.2092C>T	p.Pro698Ser	p.P698S	ENST00000353224	NM_177990.2	698	Cca/Tca																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31383227	31383227	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148132847		P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	81	435	0	ENST00000328111.2:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000328111	NM_006892.3	380	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420106	41420106	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	37	281	0	ENST00000373198.4:c.215G>A	p.Gly72Glu	p.G72E	ENST00000373198	NM_133170.3	72	gGa/gAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55570044	55570044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	61	375	0	ENST00000288135.5:c.911C>T	p.Thr304Ile	p.T304I	ENST00000288135	NM_000222.2	304	aCc/aTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	76	159	0				ENST00000310581	NM_198253.2																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67593308	67593308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	55	373	0	ENST00000274335.5:c.2054A>G	p.Tyr685Cys	p.Y685C	ENST00000274335		685	tAt/tGt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166850	32166850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	100	634	2	ENST00000375023.3:c.4388G>A	p.Gly1463Glu	p.G1463E	ENST00000375023	NM_004557.3	1463	gGg/gAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	152	391	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	78	297	1	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	78	297	1	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0036240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	78	297	1	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	39	394	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	125	367	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871202	35871202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200772681		P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	41	418	0	ENST00000303115.3:c.424G>A	p.Gly142Arg	p.G142R	ENST00000303115	NM_002185.3	142	Gga/Aga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669525	88669525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	64	384	1	ENST00000360948.2:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000360948	NM_001012338.2	458	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992052	72992052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	74	532	0	ENST00000268489.5:c.1993C>T	p.Arg665Cys	p.R665C	ENST00000268489	NM_006885.3	665	Cgt/Tgt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964501	93964501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	55	489	0	ENST00000369303.4:c.2396C>T	p.Pro799Leu	p.P799L	ENST00000369303	NM_004440.3	799	cCa/cTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	34	214	0				ENST00000310581	NM_198253.2																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115273019	115273019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	56	566	2	ENST00000438362.2:c.1354C>T	p.His452Tyr	p.H452Y	ENST00000438362	NM_001242891.1	452	Cat/Tat																																																																														
LMO1	4004	MSKCC	GRCh37	11	8252036	8252036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	42	546	0	ENST00000335790.3:c.41C>T	p.Ser14Phe	p.S14F	ENST00000335790	NM_002315.2	14	tCc/tTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679747	88679747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	69	505	0	ENST00000360948.2:c.716C>T	p.Pro239Leu	p.P239L	ENST00000360948	NM_001012338.2	239	cCt/cTt																																																																														
CASP8	841	MSKCC	GRCh37	2	202149745	202149745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	81	575	0	ENST00000358485.4:c.1186A>G	p.Thr396Ala	p.T396A	ENST00000358485	NM_001080125.1	396	Aca/Gca																																																																														
CASP8	841	MSKCC	GRCh37	2	202149767	202149767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	83	589	0	ENST00000358485.4:c.1208A>G	p.Lys403Arg	p.K403R	ENST00000358485	NM_001080125.1	403	aAg/aGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385261	41385261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	54	477	0	ENST00000373198.4:c.700G>A	p.Asp234Asn	p.D234N	ENST00000373198	NM_133170.3	234	Gac/Aac																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62325764	62325764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	62	493	0	ENST00000508582.2:c.3104C>T	p.Ala1035Val	p.A1035V	ENST00000508582		1035	gCt/gTt																																																																														
EP300	2033	MSKCC	GRCh37	22	41573279	41573279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201644988		P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	83	668	1	ENST00000263253.7:c.5564C>T	p.Pro1855Leu	p.P1855L	ENST00000263253	NM_001429.3	1855	cCa/cTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250921	153250922	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	22	268	0	ENST00000281708.4:c.1138dup	p.Asp380GlyfsTer2	p.D380Gfs*2	ENST00000281708	NM_033632.3	380	gat/gGat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176666778	176666778	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	36	284	0	ENST00000439151.2:c.4214A>T	p.Gln1405Leu	p.Q1405L	ENST00000439151	NM_022455.4	1405	cAa/cTa																																																																														
BTK	695	MSKCC	GRCh37	X	100608315	100608315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	98	482	0	ENST00000308731.7:c.1775C>T	p.Ser592Phe	p.S592F	ENST00000308731	NM_000061.2	592	tCc/tTc																																																																														
BTK	695	MSKCC	GRCh37	X	100608914	100608914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	77	529	0	ENST00000308731.7:c.1694C>T	p.Pro565Leu	p.P565L	ENST00000308731	NM_000061.2	565	cCa/cTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	44	340	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	35	317	0				ENST00000310581	NM_198253.2																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89259388	89259388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	55	540	0	ENST00000336596.2:c.532G>A	p.Gly178Arg	p.G178R	ENST00000336596	NM_005233.5	178	Gga/Aga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423632	88423632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	46	406	0	ENST00000360948.2:c.2203C>T	p.Arg735Cys	p.R735C	ENST00000360948	NM_001012338.2	735	Cgc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916248	9916248	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	35	386	0	ENST00000330684.3:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000330684	NM_001134407.1	681	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032197	10032197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	63	708	0	ENST00000330684.3:c.626C>T	p.Ser209Phe	p.S209F	ENST00000330684	NM_001134407.1	209	tCc/tTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164850	47164850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	42	327	1	ENST00000409792.3:c.1276C>T	p.His426Tyr	p.H426Y	ENST00000409792	NM_014159.6	426	Cat/Tat																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073970	8073970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	62	445	0	ENST00000377482.5:c.689G>A	p.Gly230Glu	p.G230E	ENST00000377482	NM_018948.3	230	gGa/gAa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41239733	41239733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	95	694	0	ENST00000379561.5:c.617C>T	p.Ser206Leu	p.S206L	ENST00000379561	NM_002015.3	206	tCg/tTg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422107	81422107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	68	511	0	ENST00000298171.2:c.83C>T	p.Pro28Leu	p.P28L	ENST00000298171	NM_000369.2	28	cCc/cTc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289074	33289074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	87	650	0	ENST00000374542.5:c.478C>T	p.Pro160Ser	p.P160S	ENST00000374542	NM_001141970.1	160	Cct/Tct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117679003	117679003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	19	417	0	ENST00000368508.3:c.3818C>T	p.Ser1273Leu	p.S1273L	ENST00000368508	NM_002944.2	1273	tCa/tTa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5022097	5022097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	46	555	1	ENST00000381652.3:c.110C>T	p.Pro37Leu	p.P37L	ENST00000381652	NM_004972.3	37	cCa/cTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	170	410	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367257	50367257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	164	255	0	ENST00000331340.3:c.64G>A	p.Asp22Asn	p.D22N	ENST00000331340	NM_006060.4	22	Gat/Aat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258683	16258683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	245	432	0	ENST00000375759.3:c.5948C>T	p.Ser1983Leu	p.S1983L	ENST00000375759	NM_015001.2	1983	tCg/tTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591116	67591116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	127	262	0	ENST00000274335.5:c.1709T>C	p.Leu570Pro	p.L570P	ENST00000274335		570	cTt/cCt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729162	66729162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	417	636	0	ENST00000307102.5:c.370C>T	p.Pro124Ser	p.P124S	ENST00000307102	NM_002755.3	124	Ccg/Tcg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155180	55155180	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267600187		P-0036794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	281	516	1	ENST00000257290.5:c.2779G>A	p.Glu927Lys	p.E927K	ENST00000257290	NM_006206.4	927	Gag/Aag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715746	18715746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	205	322	0	ENST00000266497.5:c.3577C>T	p.Pro1193Ser	p.P1193S	ENST00000266497		1193	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	155	324	0				ENST00000310581	NM_198253.2																																																																																
ARID2	196528	MSKCC	GRCh37	12	46244838	46244838	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	400	640	2	ENST00000334344.6:c.2932C>G	p.Pro978Ala	p.P978A	ENST00000334344	NM_152641.2	978	Cca/Gca																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549227	21549227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	518	813	1	ENST00000382592.4:c.3049G>A	p.Gly1017Ser	p.G1017S	ENST00000382592	NM_014572.2	1017	Ggt/Agt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120236	70120236	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	417	732	0	ENST00000245479.2:c.1238A>C	p.His413Pro	p.H413P	ENST00000245479	NM_000346.3	413	cAc/cCc																																																																														
KDR	3791	MSKCC	GRCh37	4	55948764	55948764	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	284	620	0	ENST00000263923.4:c.3701T>G	p.Val1234Gly	p.V1234G	ENST00000263923	NM_002253.2	1234	gTg/gGg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222269	53222269	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	195	864	0	ENST00000375401.3:c.4563G>C	p.Glu1521Asp	p.E1521D	ENST00000375401	NM_004187.3	1521	gaG/gaC																																																																														
BRAF	673	MSKCC	GRCh37	7	140453138	140453139	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0036832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	92	347	0	ENST00000288602.6:c.1794_1796dupTAC	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	aca/acTACa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	129	244	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29665053	29665053	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	156	315	0	ENST00000358273.4:c.6715C>T	p.Gln2239Ter	p.Q2239*	ENST00000358273	NM_001042492.2	2239	Caa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	96	149	0				ENST00000310581	NM_198253.2																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123279562	123279562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	158	351	0	ENST00000358487.5:c.870G>A	p.Trp290Ter	p.W290*	ENST00000358487	NM_000141.4	290	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578480	7578482	+	frameshift_variant	Frame_Shift_Del	DEL	TGT	TGT	GG			P-0036862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	222	366	1	ENST00000269305.4:c.448_450delinsCC	p.Thr150ProfsTer20	p.T150Pfs*20	ENST00000269305	NM_001126112.2	150	ACA/CC																																																																														
CASP8	841	MSKCC	GRCh37	2	202149726	202149732	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCCC	GGCCCCC	-			P-0036862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	153	333	0	ENST00000358485.4:c.1167_1173del	p.Ala390SerfsTer4	p.A390Sfs*4	ENST00000358485	NM_001080125.1	389	gaGGCCCCC/ga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488766	212488767	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0036862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	130	274	1	ENST00000342788.4:c.2082_2083delinsAA	p.Val695Met	p.V695M	ENST00000342788	NM_005235.2	694	ttGGtg/ttAAtg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45651283	45651283	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	185	441	0	ENST00000407780.3:c.742A>T	p.Ser248Cys	p.S248C	ENST00000407780	NM_001283052.1	248	Agt/Tgt																																																																														
TET2	54790	MSKCC	GRCh37	4	106155736	106155736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	115	217	0	ENST00000380013.4:c.637G>A	p.Val213Ile	p.V213I	ENST00000380013	NM_001127208.2	213	Gtt/Att																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400027	139400027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	210	335	0	ENST00000277541.6:c.4321C>T	p.Pro1441Ser	p.P1441S	ENST00000277541	NM_017617.3	1441	Ccc/Tcc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	115	578	0	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982080	93982080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	238	500	0	ENST00000369303.4:c.1385C>T	p.Ser462Phe	p.S462F	ENST00000369303	NM_004440.3	462	tCc/tTc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264412	46264412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	123	497	0	ENST00000371998.3:c.1459C>T	p.Arg487Cys	p.R487C	ENST00000371998		487	Cgt/Tgt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441974	6441974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	65	684	1	ENST00000356142.4:c.533C>T	p.Ala178Val	p.A178V	ENST00000356142	NM_018890.3	178	gCg/gTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106156120	106156120	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	80	332	0	ENST00000380013.4:c.1021C>T	p.Gln341Ter	p.Q341*	ENST00000380013	NM_001127208.2	341	Cag/Tag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925427	114925427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	134	590	0	ENST00000543371.1:c.1505C>T	p.Ser502Phe	p.S502F	ENST00000543371	NM_001198531.1	502	tCc/tTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609739	28609739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	142	753	0	ENST00000241453.7:c.1490C>T	p.Ser497Leu	p.S497L	ENST00000241453	NM_004119.2	497	tCg/tTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121892	2121893	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0036873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	378	820	1	ENST00000219476.3:c.2054_2055delinsTT	p.Pro685Leu	p.P685L	ENST00000219476	NM_000548.3	685	cCC/cTT																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110494	8110494	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0036873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	69	419	0	ENST00000585124.1:c.398A>C	p.His133Pro	p.H133P	ENST00000585124	NM_004217.3	133	cAc/cCc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56348448	56348449	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0036873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	70	315	1	ENST00000348428.3:c.256_257delinsAA	p.Gly86Lys	p.G86K	ENST00000348428	NM_006785.3	86	GGa/AAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286765	212286765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	165	440	1	ENST00000342788.4:c.2931G>A	p.Met977Ile	p.M977I	ENST00000342788	NM_005235.2	977	atG/atA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	66	256	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	126	578	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	163	524	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435667	18435667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	38	216	0	ENST00000266497.5:c.652G>A	p.Glu218Lys	p.E218K	ENST00000266497		218	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70344943	70344943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	120	530	0	ENST00000374080.3:c.2173C>T	p.Leu725Phe	p.L725F	ENST00000374080		725	Ctt/Ttt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	307	632	1	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9546620	9546620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	34	458	0	ENST00000353224.5:c.1402G>A	p.Glu468Lys	p.E468K	ENST00000353224	NM_177990.2	468	Gag/Aag																																																																														
ATM	472	MSKCC	GRCh37	11	108198453	108198453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	63	317	0	ENST00000278616.4:c.7057C>T	p.Pro2353Ser	p.P2353S	ENST00000278616	NM_000051.3	2353	Cct/Tct																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652303	48652303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	171	666	0	ENST00000376670.3:c.974G>A	p.Gly325Glu	p.G325E	ENST00000376670	NM_002049.3	325	gGa/gAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245343	46245343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	88	427	0	ENST00000334344.6:c.3437C>T	p.Ser1146Leu	p.S1146L	ENST00000334344	NM_152641.2	1146	tCg/tTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55955873	55955873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	79	361	0	ENST00000263923.4:c.3289G>A	p.Glu1097Lys	p.E1097K	ENST00000263923	NM_002253.2	1097	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987272	2987272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	141	507	0	ENST00000396946.4:c.157G>A	p.Asp53Asn	p.D53N	ENST00000396946	NM_032415.4	53	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101176	41101176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	176	529	0	ENST00000373198.4:c.1180G>A	p.Glu394Lys	p.E394K	ENST00000373198	NM_133170.3	394	Gaa/Aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575116	48575116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	46	327	0	ENST00000342988.3:c.310C>T	p.Leu104Phe	p.L104F	ENST00000342988	NM_005359.5	104	Ctt/Ttt																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139929	50139929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	353	715	1	ENST00000246792.3:c.400G>A	p.Asp134Asn	p.D134N	ENST00000246792	NM_006270.3	134	Gac/Aac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031984	10031984	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185993125		P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	118	603	0	ENST00000330684.3:c.839C>T	p.Ser280Phe	p.S280F	ENST00000330684	NM_001134407.1	280	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211154	36211154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	207	864	2	ENST00000222270.7:c.905C>T	p.Pro302Leu	p.P302L	ENST00000222270	NM_014727.1	302	cCc/cTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247617	123247617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	159	415	0	ENST00000358487.5:c.1874G>A	p.Arg625Gln	p.R625Q	ENST00000358487	NM_000141.4	625	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492925	8492925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	115	514	0	ENST00000356435.5:c.2404G>A	p.Ala802Thr	p.A802T	ENST00000356435		802	Gcc/Acc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522581	176522581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	167	709	0	ENST00000292408.4:c.1678G>A	p.Glu560Lys	p.E560K	ENST00000292408	NM_213647.1	560	Gag/Aag																																																																														
ALK	238	MSKCC	GRCh37	2	29754866	29754866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	130	368	1	ENST00000389048.3:c.1069C>T	p.Pro357Ser	p.P357S	ENST00000389048	NM_004304.4	357	Ccc/Tcc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344458	118344458	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	66	228	0	ENST00000534358.1:c.2584C>T	p.Arg862Ter	p.R862*	ENST00000534358	NM_005933.3	862	Cga/Tga																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204920	128204920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	148	718	0	ENST00000341105.2:c.521C>T	p.Pro174Leu	p.P174L	ENST00000341105	NM_032638.4	174	cCa/cTa																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651181	206651181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	148	685	0	ENST00000367120.3:c.791C>T	p.Pro264Leu	p.P264L	ENST00000367120	NM_014002.3	264	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29665755	29665756	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A	rs1230257170		P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	29	198	0	ENST00000358273.4:c.6854dup	p.Tyr2285Ter	p.Y2285*	ENST00000358273	NM_001042492.2	2285	tac/tAac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40911165	40911165	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	44	318	0	ENST00000373198.4:c.2140G>A	p.Glu714Lys	p.E714K	ENST00000373198	NM_133170.3	714	Gag/Aag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11210192	11210192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	278	482	0	ENST00000361445.4:c.4561T>G	p.Trp1521Gly	p.W1521G	ENST00000361445	NM_004958.3	1521	Tgg/Ggg																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45799099	45799099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	357	717	0	ENST00000372115.3:c.292C>T	p.Pro98Ser	p.P98S	ENST00000372115	NM_001048171.1	98	Cca/Tca																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874280	155874280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	196	437	0	ENST00000368323.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000368323	NM_006912.5	84	gCc/gTc																																																																														
MDM4	4194	MSKCC	GRCh37	1	204515983	204515983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	56	290	0	ENST00000367182.3:c.881C>T	p.Thr294Ile	p.T294I	ENST00000367182	NM_001278516.1	294	aCc/aTc																																																																														
PARP1	142	MSKCC	GRCh37	1	226568840	226568840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	165	625	1	ENST00000366794.5:c.1229C>T	p.Ala410Val	p.A410V	ENST00000366794	NM_001618.3	410	gCc/gTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310839	123310839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	130	543	0	ENST00000358487.5:c.589G>A	p.Glu197Lys	p.E197K	ENST00000358487	NM_000141.4	197	Gag/Aag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534705	18534705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	72	328	0	ENST00000266497.5:c.1763C>T	p.Ser588Phe	p.S588F	ENST00000266497		588	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431049	49431049	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	140	649	0	ENST00000301067.7:c.10090C>T	p.Gln3364Ter	p.Q3364*	ENST00000301067	NM_003482.3	3364	Cag/Tag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121438903	121438903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	173	697	0	ENST00000257555.6:c.1804G>A	p.Asp602Asn	p.D602N	ENST00000257555		602	Gac/Aac																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041742	29041742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	60	354	0	ENST00000282397.4:c.77G>A	p.Gly26Asp	p.G26D	ENST00000282397	NM_002019.4	26	gGt/gAt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610246	81610246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	93	398	0	ENST00000298171.2:c.1844C>T	p.Pro615Leu	p.P615L	ENST00000298171	NM_000369.2	615	cCa/cTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42026784	42026784	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	58	284	0	ENST00000219905.7:c.3908A>G	p.Lys1303Arg	p.K1303R	ENST00000219905	NM_001164273.1	1303	aAa/aGa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	82	312	0	ENST00000268489.5:c.10285C>T	p.Arg3429Cys	p.R3429C	ENST00000268489	NM_006885.3	3429	Cgt/Tgt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346570	89346570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	106	482	0	ENST00000301030.4:c.6380C>T	p.Pro2127Leu	p.P2127L	ENST00000301030	NM_001256183.1	2127	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	125	610	0	ENST00000269305.4:c.281C>T	p.Ser94Leu	p.S94L	ENST00000269305	NM_001126112.2	94	tCa/tTa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138431139	138431139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	48	277	0	ENST00000289153.2:c.1310C>T	p.Pro437Leu	p.P437L	ENST00000289153	NM_006219.2	437	cCt/cTt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133602	55133602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	90	355	0	ENST00000257290.5:c.906G>A	p.Met302Ile	p.M302I	ENST00000257290	NM_006206.4	302	atG/atA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295201	1295201	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	62	202	2				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876205	35876205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	103	475	0	ENST00000303115.3:c.997G>A	p.Glu333Lys	p.E333K	ENST00000303115	NM_002185.3	333	Gaa/Aaa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876469	35876469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	127	544	0	ENST00000303115.3:c.1261C>T	p.Leu421Phe	p.L421F	ENST00000303115	NM_002185.3	421	Ctc/Ttc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522623	176522623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	220	726	0	ENST00000292408.4:c.1720C>T	p.Pro574Ser	p.P574S	ENST00000292408	NM_213647.1	574	Ccc/Tcc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641065	117641065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	62	493	0	ENST00000368508.3:c.5906G>A	p.Gly1969Glu	p.G1969E	ENST00000368508	NM_002944.2	1969	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117707019	117707019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	115	453	0	ENST00000368508.3:c.2131G>A	p.Asp711Asn	p.D711N	ENST00000368508	NM_002944.2	711	Gat/Aat																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001386	150001386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	72	517	0	ENST00000253339.5:c.2218G>A	p.Asp740Asn	p.D740N	ENST00000253339		740	Gat/Aat																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730045	41730045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	121	471	0	ENST00000242208.4:c.484C>T	p.Pro162Ser	p.P162S	ENST00000242208	NM_002192.2	162	Ccc/Tcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55219011	55219011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	76	308	0	ENST00000275493.2:c.584C>T	p.Pro195Leu	p.P195L	ENST00000275493	NM_005228.3	195	cCc/cTc																																																																														
CDK6	1021	MSKCC	GRCh37	7	92247472	92247472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	75	258	0	ENST00000265734.4:c.748C>T	p.Pro250Ser	p.P250S	ENST00000265734	NM_001259.6	250	Ccc/Tcc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545696	106545696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	90	496	0	ENST00000359195.3:c.3173G>A	p.Gly1058Glu	p.G1058E	ENST00000359195	NM_002649.2	1058	gGg/gAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891130	151891130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	98	378	0	ENST00000262189.6:c.4624C>T	p.Pro1542Ser	p.P1542S	ENST00000262189	NM_170606.2	1542	Ccc/Tcc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371875	55371875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	91	133	0	ENST00000297316.4:c.565C>T	p.Pro189Ser	p.P189S	ENST00000297316	NM_022454.3	189	Ccc/Tcc																																																																														
LYN	4067	MSKCC	GRCh37	8	56866531	56866531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	325	624	1	ENST00000519728.1:c.778G>A	p.Glu260Lys	p.E260K	ENST00000519728	NM_002350.3	260	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030835	69030835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	184	307	1	ENST00000288368.4:c.3377G>A	p.Ser1126Asn	p.S1126N	ENST00000288368	NM_024870.2	1126	aGc/aAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465564	8465564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	78	510	0	ENST00000356435.5:c.3616G>A	p.Gly1206Arg	p.G1206R	ENST00000356435		1206	Ggg/Agg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518346	8518346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	68	314	1	ENST00000356435.5:c.1045G>A	p.Glu349Lys	p.E349K	ENST00000356435		349	Gag/Aag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410718	63410718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	122	657	0	ENST00000330258.3:c.2449G>A	p.Asp817Asn	p.D817N	ENST00000330258	NM_152424.3	817	Gat/Aat																																																																														
ATRX	546	MSKCC	GRCh37	X	76938502	76938502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	64	529	0	ENST00000373344.5:c.2246C>T	p.Ser749Phe	p.S749F	ENST00000373344	NM_000489.3	749	tCt/tTt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661764	227661764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	149	630	0	ENST00000305123.5:c.1691G>C	p.Ser564Thr	p.S564T	ENST00000305123	NM_005544.2	564	aGt/aCt																																																																														
FYN	2534	MSKCC	GRCh37	6	111983138	111983138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	17	370	0	ENST00000368678.4:c.1409G>A	p.Arg470Gln	p.R470Q	ENST00000368678		470	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	118	386	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	11	346	0	ENST00000358487.5:c.755C>T	p.Ser252Leu	p.S252L	ENST00000358487	NM_000141.4	252	tCg/tTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979257	93979257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	19	388	0	ENST00000369303.4:c.1571G>A	p.Gly524Glu	p.G524E	ENST00000369303	NM_004440.3	524	gGa/gAa																																																																														
CBL	867	MSKCC	GRCh37	11	119149242	119149242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	28	603	0	ENST00000264033.4:c.1250C>T	p.Pro417Leu	p.P417L	ENST00000264033	NM_005188.3	417	cCt/cTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55961812	55961812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	52	508	1	ENST00000263923.4:c.2749G>A	p.Glu917Lys	p.E917K	ENST00000263923	NM_002253.2	917	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858064	9858064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	33	680	0	ENST00000330684.3:c.3337C>T	p.Pro1113Ser	p.P1113S	ENST00000330684	NM_001134407.1	1113	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7579519	7579520	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0037528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	68	727	0	ENST00000269305.4:c.167_168del	p.Glu56GlyfsTer6	p.E56Gfs*6	ENST00000269305	NM_001126112.2	56	gAA/g																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15995359	15995359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	51	442	0	ENST00000268712.3:c.2834C>T	p.Pro945Leu	p.P945L	ENST00000268712	NM_006311.3	945	cCa/cTa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321487	62321487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	29	743	0	ENST00000508582.2:c.2261C>T	p.Pro754Leu	p.P754L	ENST00000508582		754	cCc/cTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93953224	93953224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	32	601	0	ENST00000369303.4:c.2917C>T	p.His973Tyr	p.H973Y	ENST00000369303	NM_004440.3	973	Cat/Tat																																																																														
ATRX	546	MSKCC	GRCh37	X	76938866	76938866	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	27	753	0	ENST00000373344.5:c.1882G>T	p.Gly628Ter	p.G628*	ENST00000373344	NM_000489.3	628	Gga/Tga																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149436936	149436936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	347	627	0	ENST00000286301.3:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000286301	NM_005211.3	745	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	410	547	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245858	46245858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	218	443	0	ENST00000334344.6:c.3952C>T	p.Gln1318Ter	p.Q1318*	ENST00000334344	NM_152641.2	1318	Cag/Tag																																																																														
GNA11	2767	MSKCC	GRCh37	19	3115012	3115012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			719	793	752	0	ENST00000078429.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000078429	NM_002067.2	183	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	437	762	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9547019	9547019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	199	309	0	ENST00000353224.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000353224	NM_177990.2	335	Cga/Tga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861245	57861245	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	335	562	0	ENST00000228682.2:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000228682	NM_005269.2	348	Cga/Tga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953195	81953195	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187454354		P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	292	391	1	ENST00000359376.3:c.2161G>A	p.Glu721Lys	p.E721K	ENST00000359376	NM_002661.3	721	Gag/Aag																																																																														
PARK2	0	MSKCC	GRCh37	6	162394449	162394449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			120	267	410	0	ENST00000366898.1:c.619G>A	p.Glu207Lys	p.E207K	ENST00000366898	NM_004562.2	207	Gaa/Aaa																																																																														
STK19	8859	MSKCC	GRCh37	6	31940120	31940120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	417	680	0	ENST00000375331.2:c.262G>A	p.Glu88Lys	p.E88K	ENST00000375331	NM_004197.1	88	Gaa/Aaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246058	41246058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			989	385	819	0	ENST00000357654.3:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000357654	NM_007294.3	497	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29670153	29670153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	238	411	0	ENST00000358273.4:c.7189G>A	p.Gly2397Arg	p.G2397R	ENST00000358273	NM_001042492.2	2397	Ggg/Agg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273995	10273995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			760	528	843	1	ENST00000330684.3:c.274G>A	p.Gly92Arg	p.G92R	ENST00000330684	NM_001134407.1	92	Ggg/Agg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25471052	25471052	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			753	618	857	0	ENST00000264709.3:c.709C>T	p.Gln237Ter	p.Q237*	ENST00000264709	NM_175629.2	237	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	689	233	0				ENST00000310581	NM_198253.2																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3824672	3824672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	352	560	1	ENST00000262367.5:c.2181G>A	p.Met727Ile	p.M727I	ENST00000262367	NM_004380.2	727	atG/atA																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274824	123274824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	35	527	0	ENST00000358487.5:c.1094G>A	p.Arg365Lys	p.R365K	ENST00000358487	NM_000141.4	365	aGa/aAa																																																																														
PGR	5241	MSKCC	GRCh37	11	100998952	100998952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	288	479	0	ENST00000325455.5:c.850G>A	p.Glu284Lys	p.E284K	ENST00000325455	NM_001202474.3	284	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344885	118344885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	254	337	0	ENST00000534358.1:c.3011C>T	p.Ser1004Phe	p.S1004F	ENST00000534358	NM_005933.3	1004	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376322	118376322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			198	363	591	0	ENST00000534358.1:c.9715C>T	p.Pro3239Ser	p.P3239S	ENST00000534358	NM_005933.3	3239	Ccc/Tcc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245006	46245006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	430	640	0	ENST00000334344.6:c.3100C>T	p.Gln1034Ter	p.Q1034*	ENST00000334344	NM_152641.2	1034	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446487	49446487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	271	440	0	ENST00000301067.7:c.1118C>T	p.Ser373Leu	p.S373L	ENST00000301067	NM_003482.3	373	tCa/tTa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622469	28622469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	301	645	0	ENST00000241453.7:c.1148G>A	p.Trp383Ter	p.W383*	ENST00000241453	NM_004119.2	383	tGg/tAg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774125	66774125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			939	606	1019	1	ENST00000307102.5:c.601C>T	p.Arg201Cys	p.R201C	ENST00000307102	NM_002755.3	201	Cgt/Tgt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81973550	81973550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			655	378	665	0	ENST00000359376.3:c.3367G>A	p.Glu1123Lys	p.E1123K	ENST00000359376	NM_002661.3	1123	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29654616	29654616	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	186	350	0	ENST00000358273.4:c.5368G>T	p.Glu1790Ter	p.E1790*	ENST00000358273	NM_001042492.2	1790	Gaa/Taa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883218	37883218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			737	765	683	1	ENST00000269571.5:c.3121G>A	p.Gly1041Ser	p.G1041S	ENST00000269571		1041	Ggc/Agc																																																																														
INSR	3643	MSKCC	GRCh37	19	7143096	7143096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			517	500	506	0	ENST00000302850.5:c.2273C>T	p.Ser758Phe	p.S758F	ENST00000302850	NM_000208.2	758	tCt/tTt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220973	36220973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	372	521	1	ENST00000222270.7:c.5023C>T	p.Gln1675Ter	p.Q1675*	ENST00000222270	NM_014727.1	1675	Cag/Tag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919743	50919743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	452	691	0	ENST00000440232.2:c.2911G>A	p.Glu971Lys	p.E971K	ENST00000440232	NM_002691.3	971	Gag/Aag																																																																														
ALK	238	MSKCC	GRCh37	2	29497988	29497988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			663	443	597	0	ENST00000389048.3:c.2018A>G	p.Gln673Arg	p.Q673R	ENST00000389048	NM_004304.4	673	cAg/cGg																																																																														
TET2	54790	MSKCC	GRCh37	4	106155815	106155815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			492	311	540	0	ENST00000380013.4:c.716C>T	p.Ser239Phe	p.S239F	ENST00000380013	NM_001127208.2	239	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539321	187539321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	357	586	0	ENST00000441802.2:c.8419C>T	p.Pro2807Ser	p.P2807S	ENST00000441802	NM_005245.3	2807	Ccg/Tcg																																																																														
TERT	7015	MSKCC	GRCh37	5	1294165	1294165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			625	1716	688	0	ENST00000310581.5:c.836C>T	p.Ala279Val	p.A279V	ENST00000310581	NM_198253.2	279	gCc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295200	1295200	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	99	184	0				ENST00000310581	NM_198253.2																																																																																
DAXX	1616	MSKCC	GRCh37	6	33286925	33286925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			683	885	784	0	ENST00000374542.5:c.2012C>T	p.Ser671Phe	p.S671F	ENST00000374542	NM_001141970.1	671	tCc/tTc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6045603	6045603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	262	341	1	ENST00000265849.7:c.83C>T	p.Ser28Phe	p.S28F	ENST00000265849	NM_000535.5	28	tCt/tTt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729933	41729933	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111379520		P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	450	791	0	ENST00000242208.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000242208	NM_002192.2	199	gGg/gAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467645	50467645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	250	397	0	ENST00000331340.3:c.880G>A	p.Asp294Asn	p.D294N	ENST00000331340	NM_006060.4	294	Gac/Aac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341964	8341964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	247	457	0	ENST00000356435.5:c.4676G>A	p.Arg1559Gln	p.R1559Q	ENST00000356435		1559	cGg/cAg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781158	135781158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	417	749	3	ENST00000298552.3:c.1807C>T	p.Pro603Ser	p.P603S	ENST00000298552	NM_001162426.1	603	Ccg/Tcg																																																																														
MED12	9968	MSKCC	GRCh37	X	70347294	70347295	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0037606-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	367	581	1	ENST00000374080.3:c.2958_2959delinsAT	p.Asn987Tyr	p.N987Y	ENST00000374080		986	aaGAac/aaATac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	281	428	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543871	212543871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	177	450	0	ENST00000342788.4:c.1528G>A	p.Asp510Asn	p.D510N	ENST00000342788	NM_005235.2	510	Gat/Aat																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	312	828	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
STK19	8859	MSKCC	GRCh37	6	31940126	31940126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	293	724	1	ENST00000375331.2:c.268C>T	p.Pro90Ser	p.P90S	ENST00000375331	NM_004197.1	90	Cct/Tct																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037444	12037444	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	176	575	0	ENST00000396373.4:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000396373	NM_001987.4	359	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244613	41244613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	149	663	0	ENST00000357654.3:c.2935C>T	p.Arg979Cys	p.R979C	ENST00000357654	NM_007294.3	979	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	123	340	0				ENST00000310581	NM_198253.2																																																																																
SESN3	143686	MSKCC	GRCh37	11	94911065	94911066	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	118	486	1	ENST00000536441.1:c.1064_1065delinsTT	p.Thr355Ile	p.T355I	ENST00000536441	NM_144665.3	355	aCC/aTT																																																																														
PGR	5241	MSKCC	GRCh37	11	100920735	100920735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	127	557	0	ENST00000325455.5:c.2413C>T	p.Pro805Ser	p.P805S	ENST00000325455	NM_001202474.3	805	Cca/Tca																																																																														
LATS2	26524	MSKCC	GRCh37	13	21620118	21620118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	113	594	0	ENST00000382592.4:c.48del	p.Gln17SerfsTer10	p.Q17Sfs*10	ENST00000382592	NM_014572.2	16	cgG/cg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25459858	25459858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	254	678	1	ENST00000264709.3:c.2425G>A	p.Val809Met	p.V809M	ENST00000264709	NM_175629.2	809	Gtg/Atg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62318996	62318996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	218	632	0	ENST00000508582.2:c.1426G>A	p.Val476Met	p.V476M	ENST00000508582		476	Gtg/Atg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176639138	176639138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	109	544	1	ENST00000439151.2:c.3738C>A	p.Asp1246Glu	p.D1246E	ENST00000439151	NM_022455.4	1246	gaC/gaA																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163834	32163834	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	192	567	0	ENST00000375023.3:c.5392C>T	p.Gln1798Ter	p.Q1798*	ENST00000375023	NM_004557.3	1798	Cag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528349	157528349	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	298	727	0	ENST00000346085.5:c.6074T>A	p.Leu2025Ter	p.L2025*	ENST00000346085	NM_020732.3	2025	tTg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	88	613	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	39	353	0				ENST00000310581	NM_198253.2																																																																																
DOT1L	84444	MSKCC	GRCh37	19	2214564	2214564	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200661860		P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	92	837	0	ENST00000398665.3:c.1892C>T	p.Ser631Leu	p.S631L	ENST00000398665	NM_032482.2	631	tCg/tTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945092	38945092	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769767383		P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	49	359	0	ENST00000357387.3:c.4712C>T	p.Ser1571Leu	p.S1571L	ENST00000357387	NM_152756.3	1571	tCg/tTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918761	32918761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	22	198	0	ENST00000380152.3:c.6908C>T	p.Ser2303Phe	p.S2303F	ENST00000380152		2303	tCc/tTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88428945	88428945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	33	290	0	ENST00000360948.2:c.2155G>A	p.Asp719Asn	p.D719N	ENST00000360948	NM_001012338.2	719	Gat/Aat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522569	106522569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	29	321	0	ENST00000359195.3:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000359195	NM_002649.2	849	cGa/cAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412278	63412278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	96	911	1	ENST00000330258.3:c.889G>A	p.Glu297Lys	p.E297K	ENST00000330258	NM_152424.3	297	Gag/Aag																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497196	149497196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	28	536	2	ENST00000261799.4:c.3122C>T	p.Ser1041Phe	p.S1041F	ENST00000261799	NM_002609.3	1041	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29556852	29556852	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	58	301	0	ENST00000358273.4:c.2851-1G>A		p.X951_splice	ENST00000358273	NM_001042492.2	951																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	69	468	2	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	69	468	2	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499711	8499711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	105	478	0	ENST00000356435.5:c.2258G>A	p.Arg753Lys	p.R753K	ENST00000356435		753	aGg/aAg																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2492096	2492097	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	89	790	0	ENST00000355716.4:c.500dupC	p.Thr169AspfsTer65	p.T169Dfs*65	ENST00000355716	NM_003820.2	165	tgc/tgCc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945795	17945795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	38	706	1	ENST00000458235.1:c.2065C>T	p.Pro689Ser	p.P689S	ENST00000458235	NM_000215.3	689	Ccc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481408	140481408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	31	377	0	ENST00000288602.6:c.1400C>T	p.Ser467Leu	p.S467L	ENST00000288602	NM_004333.4	467	tCa/tTa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120501	94120501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	54	289	0	ENST00000369303.4:c.550C>T	p.Leu184Phe	p.L184F	ENST00000369303	NM_004440.3	184	Ctt/Ttt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892263	9892263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	20	452	0	ENST00000330684.3:c.2227G>A	p.Glu743Lys	p.E743K	ENST00000330684	NM_001134407.1	743	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445451	49445451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	107	850	0	ENST00000301067.7:c.2015C>T	p.Ser672Phe	p.S672F	ENST00000301067	NM_003482.3	672	tCc/tTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819620	81819620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	54	502	0	ENST00000359376.3:c.26C>T	p.Ser9Phe	p.S9F	ENST00000359376	NM_002661.3	9	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046482	69046482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	52	464	0	ENST00000288368.4:c.3955C>T	p.His1319Tyr	p.H1319Y	ENST00000288368	NM_024870.2	1319	Cac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921533	178921533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	47	316	0	ENST00000263967.3:c.1015C>T	p.Leu339Phe	p.L339F	ENST00000263967	NM_006218.2	339	Ctt/Ttt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88678962	88678962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	18	227	0	ENST00000372037.3:c.902C>T	p.Ser301Phe	p.S301F	ENST00000372037	NM_004329.2	301	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68972915	68972915	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs201372935		P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	19	310	0	ENST00000288368.4:c.1240G>A	p.Glu414Lys	p.E414K	ENST00000288368	NM_024870.2	414	Gaa/Aaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70450987	70450987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	43	613	0	ENST00000373644.4:c.5827C>T	p.Pro1943Ser	p.P1943S	ENST00000373644	NM_030625.2	1943	Ccc/Tcc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926252	112926252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	36	443	1	ENST00000351677.2:c.1385G>A	p.Gly462Glu	p.G462E	ENST00000351677	NM_002834.3	462	gGa/gAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133226355	133226355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	44	902	0	ENST00000320574.5:c.3703C>T	p.Leu1235Phe	p.L1235F	ENST00000320574	NM_006231.2	1235	Ctt/Ttt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967560	26967560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	52	343	0	ENST00000381527.3:c.703C>T	p.His235Tyr	p.H235Y	ENST00000381527	NM_001260.1	235	Cac/Tac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631584	28631584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	50	286	0	ENST00000241453.7:c.384G>A	p.Met128Ile	p.M128I	ENST00000241453	NM_004119.2	128	atG/atA																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66735633	66735633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	36	310	0	ENST00000307102.5:c.454G>A	p.Asp152Asn	p.D152N	ENST00000307102	NM_002755.3	152	Gat/Aat																																																																														
BLM	641	MSKCC	GRCh37	15	91354594	91354594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	50	422	0	ENST00000355112.3:c.4034C>T	p.Ser1345Phe	p.S1345F	ENST00000355112	NM_000057.2	1345	tCt/tTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857755	9857755	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	28	481	0	ENST00000330684.3:c.3646A>C	p.Ser1216Arg	p.S1216R	ENST00000330684	NM_001134407.1	1216	Agc/Cgc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819622	81819622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	38	502	0	ENST00000359376.3:c.28C>T	p.Leu10Phe	p.L10F	ENST00000359376	NM_002661.3	10	Ctt/Ttt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686919	37686919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	57	585	0	ENST00000447079.4:c.3823C>T	p.Pro1275Ser	p.P1275S	ENST00000447079	NM_015083.1	1275	Ccg/Tcg																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752455	55752455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	94	905	2	ENST00000284073.2:c.913C>T	p.Gln305Ter	p.Q305*	ENST00000284073	NM_138962.2	305	Cag/Tag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59853772	59853772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147755155		P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	45	325	0	ENST00000259008.2:c.2087C>T	p.Pro696Leu	p.P696L	ENST00000259008	NM_032043.2	696	cCa/cTa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976103	18976104	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	51	743	0	ENST00000262803.5:c.2863_2864delinsTT	p.Pro955Phe	p.P955F	ENST00000262803	NM_002911.3	955	CCt/TTt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216664	36216664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	76	800	1	ENST00000222270.7:c.3830C>T	p.Pro1277Leu	p.P1277L	ENST00000222270	NM_014727.1	1277	cCg/cTg																																																																														
ALK	238	MSKCC	GRCh37	2	29455218	29455218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	63	592	0	ENST00000389048.3:c.2584G>A	p.Glu862Lys	p.E862K	ENST00000389048	NM_004304.4	862	Gag/Aag																																																																														
PAK7	0	MSKCC	GRCh37	20	9560899	9560899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	59	456	0	ENST00000353224.5:c.883C>T	p.Pro295Ser	p.P295S	ENST00000353224	NM_177990.2	295	Ccg/Tcg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735500	40735500	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	39	650	0	ENST00000373198.4:c.3373A>C	p.Asn1125His	p.N1125H	ENST00000373198	NM_133170.3	1125	Aat/Cat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47079248	47079248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	64	480	0	ENST00000409792.3:c.7258C>T	p.Pro2420Ser	p.P2420S	ENST00000409792	NM_014159.6	2420	Cct/Tct																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143326468	143326468	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	37	263	0	ENST00000262992.4:c.146A>G	p.Asp49Gly	p.D49G	ENST00000262992	NM_001101669.1	49	gAt/gGt																																																																														
PIM1	5292	MSKCC	GRCh37	6	37141814	37141814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	68	534	0	ENST00000373509.5:c.889C>T	p.Gln297Ter	p.Q297*	ENST00000373509	NM_002648.3	297	Cag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104660	69104660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	34	537	1	ENST00000288368.4:c.4504G>A	p.Ala1502Thr	p.A1502T	ENST00000288368	NM_024870.2	1502	Gct/Act																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331706	8331706	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	56	420	0	ENST00000356435.5:c.5410C>T	p.Gln1804Ter	p.Q1804*	ENST00000356435		1804	Cag/Tag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321391	1321391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	29	423	0	ENST00000381566.1:c.364C>T	p.Pro122Ser	p.P122S	ENST00000381566		122	Ccg/Tcg																																																																														
ARAF	369	MSKCC	GRCh37	X	47424501	47424501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	60	593	0	ENST00000377045.4:c.421C>T	p.Pro141Ser	p.P141S	ENST00000377045	NM_001654.4	141	Ccc/Tcc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412320	63412320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	83	833	0	ENST00000330258.3:c.847G>A	p.Glu283Lys	p.E283K	ENST00000330258	NM_152424.3	283	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	24	270	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376932	118376932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	22	338	0	ENST00000534358.1:c.10325C>T	p.Ala3442Val	p.A3442V	ENST00000534358	NM_005933.3	3442	gCc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	186	295	1				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	440	361	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	440	361	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	154	259	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530383	187530383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	134	207	0	ENST00000441802.2:c.10160C>T	p.Pro3387Leu	p.P3387L	ENST00000441802	NM_005245.3	3387	cCc/cTc																																																																														
IL10	3586	MSKCC	GRCh37	1	206941988	206941988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	162	141	0	ENST00000423557.1:c.530G>A	p.Arg177Gln	p.R177Q	ENST00000423557	NM_000572.2	177	cGa/cAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561564	9561564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	136	260	0	ENST00000353224.5:c.218G>A	p.Gly73Glu	p.G73E	ENST00000353224	NM_177990.2	73	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579717	7579717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	267	391	0	ENST00000269305.4:c.79C>T	p.Pro27Ser	p.P27S	ENST00000269305	NM_001126112.2	27	Cct/Tct																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047156	77047156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	189	318	0	ENST00000356341.3:c.1388C>T	p.Pro463Leu	p.P463L	ENST00000356341	NM_002576.4	463	cCa/cTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29576097	29576098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	191	260	0	ENST00000358273.4:c.4076dupC	p.Gln1360SerfsTer20	p.Q1360Sfs*20	ENST00000358273	NM_001042492.2	1357	ttc/ttCc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	440	361	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	165	238	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
PARK2	0	MSKCC	GRCh37	6	162394449	162394449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	102	196	0	ENST00000366898.1:c.619G>A	p.Glu207Lys	p.E207K	ENST00000366898	NM_004562.2	207	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046410	69046410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	168	317	0	ENST00000288368.4:c.3883G>A	p.Glu1295Lys	p.E1295K	ENST00000288368	NM_024870.2	1295	Gaa/Aaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097604	11097604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	281	540	1	ENST00000344626.4:c.784C>T	p.Pro262Ser	p.P262S	ENST00000344626	NM_003072.3	262	Ccc/Tcc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813768	50813768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	246	442	0	ENST00000398568.2:c.1322C>T	p.Ser441Phe	p.S441F	ENST00000398568	NM_001042412.1	441	tCt/tTt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679186	88679186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	208	301	1	ENST00000360948.2:c.851G>A	p.Cys284Tyr	p.C284Y	ENST00000360948	NM_001012338.2	284	tGc/tAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344458	118344458	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	104	171	0	ENST00000534358.1:c.2584C>T	p.Arg862Ter	p.R862*	ENST00000534358	NM_005933.3	862	Cga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55961751	55961751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	122	234	0	ENST00000263923.4:c.2810C>T	p.Pro937Leu	p.P937L	ENST00000263923	NM_002253.2	937	cCc/cTc																																																																														
CD274	29126	MSKCC	GRCh37	9	5465594	5465594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	162	126	0	ENST00000381577.3:c.778C>T	p.Arg260Cys	p.R260C	ENST00000381577	NM_014143.3	260	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248710	212248710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	127	264	0	ENST00000342788.4:c.3557C>T	p.Pro1186Leu	p.P1186L	ENST00000342788	NM_005235.2	1186	cCc/cTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681443	30681443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	158	211	0	ENST00000376406.3:c.569C>T	p.Ser190Phe	p.S190F	ENST00000376406	NM_014641.2	190	tCt/tTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770557	40770557	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	129	261	0	ENST00000373198.4:c.2825C>T	p.Ser942Phe	p.S942F	ENST00000373198	NM_133170.3	942	tCc/tTc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306942	65306942	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	138	277	0	ENST00000342505.4:c.2635del	p.Arg879ValfsTer32	p.R879Vfs*32	ENST00000342505	NM_002227.2	879	Cgt/gt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724614	162724615	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	507	296	0	ENST00000367921.3:c.386_387delinsAC	p.Trp129Tyr	p.W129Y	ENST00000367921	NM_006182.2	129	tGG/tAC																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612921	228612921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	355	296	0	ENST00000366696.1:c.106G>T	p.Val36Leu	p.V36L	ENST00000366696	NM_003493.2	36	Gtg/Ttg																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771427	112771427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	236	401	0	ENST00000369452.4:c.1600C>T	p.Pro534Ser	p.P534S	ENST00000369452	NM_007373.3	534	Ccc/Tcc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	442737	442738	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	170	309	1	ENST00000399788.2:c.1568_1569delinsTT	p.Pro523Leu	p.P523L	ENST00000399788	NM_001042603.1	523	cCC/cTT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230569	46230569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	158	255	1	ENST00000334344.6:c.818C>T	p.Pro273Leu	p.P273L	ENST00000334344	NM_152641.2	273	cCt/cTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910578	32910578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	178	227	0	ENST00000380152.3:c.2086G>A	p.Glu696Lys	p.E696K	ENST00000380152		696	Gaa/Aaa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341316	89341316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	110	171	0	ENST00000301030.4:c.7619G>A	p.Arg2540Gln	p.R2540Q	ENST00000301030	NM_001256183.1	2540	cGg/cAg																																																																														
ALK	238	MSKCC	GRCh37	2	29420540	29420540	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	138	190	0	ENST00000389048.3:c.3941C>T	p.Ser1314Phe	p.S1314F	ENST00000389048	NM_004304.4	1314	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713461	40713461	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	232	434	0	ENST00000373198.4:c.4054C>T	p.Gln1352Ter	p.Q1352*	ENST00000373198	NM_133170.3	1352	Cag/Tag																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169999716	169999716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	150	219	0	ENST00000295797.4:c.1027C>T	p.His343Tyr	p.H343Y	ENST00000295797	NM_002740.5	343	Cat/Tat																																																																														
KIT	3815	MSKCC	GRCh37	4	55603375	55603376	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	97	185	0	ENST00000288135.5:c.2731_2732delinsTT	p.Pro911Phe	p.P911F	ENST00000288135	NM_000222.2	911	CCc/TTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672981	30672981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	212	507	0	ENST00000376406.3:c.3979C>T	p.Pro1327Ser	p.P1327S	ENST00000376406	NM_014641.2	1327	Ccc/Tcc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681033	117681034	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	116	247	1	ENST00000368508.3:c.3586_3587delinsAA	p.Gly1196Lys	p.G1196K	ENST00000368508	NM_002944.2	1196	GGa/AAa																																																																														
PARK2	0	MSKCC	GRCh37	6	162864440	162864440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	164	302	0	ENST00000366898.1:c.73C>T	p.Gln25Ter	p.Q25*	ENST00000366898	NM_004562.2	25	Cag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962324	2962324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	486	473	0	ENST00000396946.4:c.2213G>A	p.Trp738Ter	p.W738*	ENST00000396946	NM_032415.4	738	tGg/tAg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38279338	38279338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	311	484	2	ENST00000425967.3:c.1151C>T	p.Ser384Phe	p.S384F	ENST00000425967	NM_001174067.1	384	tCt/tTt																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015067	37015067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	494	375	0	ENST00000358127.4:c.337G>A	p.Glu113Lys	p.E113K	ENST00000358127	NM_001280556.1	113	Gag/Aag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409809	63409809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	171	300	1	ENST00000330258.3:c.3358C>T	p.Leu1120Phe	p.L1120F	ENST00000330258	NM_152424.3	1120	Ctt/Ttt																																																																														
ATRX	546	MSKCC	GRCh37	X	76920137	76920137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	309	252	0	ENST00000373344.5:c.3940G>A	p.Glu1314Lys	p.E1314K	ENST00000373344	NM_000489.3	1314	Gag/Aag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179142	123179142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	323	288	0	ENST00000218089.9:c.591G>A	p.Met197Ile	p.M197I	ENST00000218089	NM_001042749.1	197	atG/atA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0038676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	8	377	0	ENST00000288602.6:c.1798_1799delGTinsAG	p.Val600Arg	p.V600R	ENST00000288602	NM_004333.4	600	GTg/AGg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636143	28636143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	81	515	0	ENST00000241453.7:c.229G>A	p.Glu77Lys	p.E77K	ENST00000241453	NM_004119.2	77	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541097	187541097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	39	333	0	ENST00000441802.2:c.6643T>C	p.Phe2215Leu	p.F2215L	ENST00000441802	NM_005245.3	2215	Ttc/Ctc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058631	72058631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	48	390	0	ENST00000357731.5:c.809G>A	p.Gly270Glu	p.G270E	ENST00000357731	NM_173808.2	270	gGa/gAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544119	18544119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	28	394	0	ENST00000266497.5:c.1936C>T	p.Leu646Phe	p.L646F	ENST00000266497		646	Ctt/Ttt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53231092	53231092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	183	331	0	ENST00000375401.3:c.1810G>A	p.Gly604Ser	p.G604S	ENST00000375401	NM_004187.3	604	Ggc/Agc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864423	57864423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	70	584	0	ENST00000228682.2:c.1900G>A	p.Gly634Arg	p.G634R	ENST00000228682	NM_005269.2	634	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408864	41408864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	68	447	0	ENST00000373198.4:c.562C>T	p.Pro188Ser	p.P188S	ENST00000373198	NM_133170.3	188	Cca/Tca																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955064	17955064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	118	735	2	ENST00000458235.1:c.163G>A	p.Val55Met	p.V55M	ENST00000458235	NM_000215.3	55	Gtg/Atg																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363517	40363517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	74	574	0	ENST00000397332.2:c.712C>T	p.His238Tyr	p.H238Y	ENST00000397332	NM_001033082.2	238	Cat/Tat																																																																														
BCL6	604	MSKCC	GRCh37	3	187443403	187443403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	59	371	0	ENST00000232014.4:c.1723C>T	p.Arg575Cys	p.R575C	ENST00000232014	NM_001130845.1	575	Cgt/Tgt																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182662947	182662947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	50	449	0	ENST00000292782.4:c.715C>T	p.Leu239Phe	p.L239F	ENST00000292782	NM_020640.2	239	Ctt/Ttt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43769857	43769857	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	68	545	1	ENST00000382044.4:c.889C>T	p.Gln297Ter	p.Q297*	ENST00000382044	NM_001141980.1	297	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	132	493	0				ENST00000310581	NM_198253.2																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36935354	36935354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	99	708	2	ENST00000361632.4:c.1373G>A	p.Gly458Asp	p.G458D	ENST00000361632		458	gGc/gAc																																																																														
ATM	472	MSKCC	GRCh37	11	108202705	108202705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	45	365	0	ENST00000278616.4:c.7729G>A	p.Val2577Ile	p.V2577I	ENST00000278616	NM_000051.3	2577	Gta/Ata																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813297	102813297	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	52	451	0	ENST00000307046.8:c.392A>G	p.Lys131Arg	p.K131R	ENST00000307046	NM_001111285.1	131	aAg/aGg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906441	32906441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	31	391	0	ENST00000380152.3:c.826G>A	p.Val276Ile	p.V276I	ENST00000380152		276	Gta/Ata																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524592	103524592	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	40	271	0	ENST00000355739.4:c.2723A>C	p.Asn908Thr	p.N908T	ENST00000355739	NM_000123.3	908	aAt/aCt																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647653	2647653	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	58	556	1	ENST00000342085.4:c.1556C>T	p.Pro519Leu	p.P519L	ENST00000342085	NM_002613.4	519	cCt/cTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944202	81944202	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	106	736	0	ENST00000359376.3:c.1811A>G	p.Asn604Ser	p.N604S	ENST00000359376	NM_002661.3	604	aAc/aGc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357482	89357483	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	70	636	1	ENST00000301030.4:c.335_336delinsTT	p.Ser112Phe	p.S112F	ENST00000301030	NM_001256183.1	112	tCC/tTT																																																																														
MSI2	124540	MSKCC	GRCh37	17	55334894	55334896	+	frameshift_variant	Frame_Shift_Del	DEL	TAC	TAC	CA			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	139	497	0	ENST00000284073.2:c.171_173delinsCA	p.Thr58ArgfsTer18	p.T58Rfs*18	ENST00000284073	NM_138962.2	57	acTACg/acCAg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78867528	78867528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	90	580	0	ENST00000306801.3:c.2264C>A	p.Ser755Tyr	p.S755Y	ENST00000306801	NM_020761.2	755	tCc/tAc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39647353	39647353	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	46	285	0	ENST00000262039.4:c.2525T>C	p.Val842Ala	p.V842A	ENST00000262039	NM_002647.2	842	gTt/gCt																																																																														
CIC	23152	MSKCC	GRCh37	19	42794793	42794793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	152	624	2	ENST00000575354.2:c.1873G>A	p.Gly625Arg	p.G625R	ENST00000575354	NM_015125.3	625	Gga/Aga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023273	31023274	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	47	566	1	ENST00000375687.4:c.2758_2759delinsTT	p.Pro920Leu	p.P920L	ENST00000375687	NM_015338.5	920	CCa/TTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710638	40710638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	192	505	0	ENST00000373198.4:c.4213G>A	p.Gly1405Arg	p.G1405R	ENST00000373198	NM_133170.3	1405	Gga/Aga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980814	40980814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	67	592	0	ENST00000373198.4:c.1672C>T	p.Pro558Ser	p.P558S	ENST00000373198	NM_133170.3	558	Cca/Tca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277898	41277898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	54	348	0	ENST00000349496.5:c.1862T>C	p.Leu621Pro	p.L621P	ENST00000349496	NM_001904.3	621	cTt/cCt																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72873652	72873653	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	47	401	0	ENST00000325599.8:c.649_650delinsTT	p.Pro217Phe	p.P217F	ENST00000325599	NM_018130.2	217	CCt/TTt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191265	185191265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	71	464	0	ENST00000265026.3:c.2146G>A	p.Gly716Ser	p.G716S	ENST00000265026	NM_004721.4	716	Ggc/Agc																																																																														
KIT	3815	MSKCC	GRCh37	4	55594196	55594197	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	424	321	0	ENST00000288135.5:c.1899_1900delinsTT	p.Glu633_Arg634delinsAspTrp	p.E633_R634delinsDW	ENST00000288135	NM_000222.2	633	gaACgg/gaTTgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524912	187524912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	84	640	0	ENST00000441802.2:c.10768T>C	p.Phe3590Leu	p.F3590L	ENST00000441802	NM_005245.3	3590	Ttc/Ctc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532929	187532930	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	67	255	0	ENST00000441802.2:c.9464-1_9464delinsAA		p.X3155_splice	ENST00000441802	NM_005245.3	3155																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515220	31515220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	85	786	1	ENST00000344624.3:c.1165G>A	p.Glu389Lys	p.E389K	ENST00000344624		389	Gaa/Aaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721906	176721906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	52	480	1	ENST00000439151.2:c.7537C>T	p.Leu2513Phe	p.L2513F	ENST00000439151	NM_022455.4	2513	Ctt/Ttt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673242	30673242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	62	630	0	ENST00000376406.3:c.3718C>T	p.Pro1240Ser	p.P1240S	ENST00000376406	NM_014641.2	1240	Cct/Tct																																																																														
STK19	8859	MSKCC	GRCh37	6	31939922	31939922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	102	642	0	ENST00000375331.2:c.149C>T	p.Pro50Leu	p.P50L	ENST00000375331	NM_004197.1	50	cCc/cTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552808	106552808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	77	670	0	ENST00000369096.4:c.773C>T	p.Ser258Phe	p.S258F	ENST00000369096	NM_001198.3	258	tCc/tTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739770	41739770	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	87	674	0	ENST00000242208.4:c.203T>A	p.Leu68Ter	p.L68*	ENST00000242208	NM_002192.2	68	tTg/tAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878137	151878137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	135	529	0	ENST00000262189.6:c.6808G>A	p.Asp2270Asn	p.D2270N	ENST00000262189	NM_170606.2	2270	Gat/Aat																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	87	614	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193099329	193099329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	57	344	0	ENST00000367435.3:c.263G>C	p.Arg88Thr	p.R88T	ENST00000367435	NM_024529.4	88	aGa/aCa																																																																														
PAK7	0	MSKCC	GRCh37	20	9560902	9560902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	69	477	0	ENST00000353224.5:c.880G>A	p.Glu294Lys	p.E294K	ENST00000353224	NM_177990.2	294	Gaa/Aaa																																																																														
BARD1	580	MSKCC	GRCh37	2	215632230	215632230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	36	320	0	ENST00000260947.4:c.1544C>T	p.Ser515Phe	p.S515F	ENST00000260947	NM_000465.2	515	tCc/tTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913357		P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	59	377	0	ENST00000288602.6:c.1405G>A	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Aga																																																																														
MALT1	10892	MSKCC	GRCh37	18	56412976	56412976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	39	381	0	ENST00000348428.3:c.1990C>T	p.Pro664Ser	p.P664S	ENST00000348428	NM_006785.3	664	Ccc/Tcc																																																																														
MAX	4149	MSKCC	GRCh37	14	65543379	65543379	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	68	503	0	ENST00000358664.4:c.298C>T	p.Arg100Cys	p.R100C	ENST00000358664	NM_002382.4	100	Cgt/Tgt																																																																														
PARK2	0	MSKCC	GRCh37	6	161771139	161771139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	73	646	3	ENST00000366898.1:c.1390G>A	p.Asp464Asn	p.D464N	ENST00000366898	NM_004562.2	464	Gac/Aac																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874206	155874206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	92	676	0	ENST00000368323.3:c.325C>T	p.His109Tyr	p.H109Y	ENST00000368323	NM_006912.5	109	Cat/Tat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812299	212812299	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	31	338	0	ENST00000342788.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000342788	NM_005235.2	93	Cag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492939	8492939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	64	523	0	ENST00000356435.5:c.2390C>T	p.Ser797Phe	p.S797F	ENST00000356435		797	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	40	313	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35871203	35871203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	53	301	0	ENST00000303115.3:c.425G>A	p.Gly142Glu	p.G142E	ENST00000303115	NM_002185.3	142	gGa/gAa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123246892	123246892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	73	512	0	ENST00000358487.5:c.2033G>T	p.Arg678Ile	p.R678I	ENST00000358487	NM_000141.4	678	aGa/aTa																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514326	69514326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	146	499	0	ENST00000294312.3:c.355G>A	p.Asp119Asn	p.D119N	ENST00000294312	NM_005117.2	119	Gac/Aac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421672	49421672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	93	761	0	ENST00000301067.7:c.14557G>A	p.Gly4853Ser	p.G4853S	ENST00000301067	NM_003482.3	4853	Ggc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422966	49422966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	88	764	0	ENST00000301067.7:c.14129C>T	p.Ser4710Phe	p.S4710F	ENST00000301067	NM_003482.3	4710	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828702	72828702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	75	610	1	ENST00000268489.5:c.7879G>A	p.Gly2627Ser	p.G2627S	ENST00000268489	NM_006885.3	2627	Ggc/Agc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81939102	81939103	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	53	549	1	ENST00000359376.3:c.1457_1458delinsTT	p.Ser486Phe	p.S486F	ENST00000359376	NM_002661.3	486	tCC/tTT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243479	41243479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	88	576	0	ENST00000357654.3:c.4069G>A	p.Glu1357Lys	p.E1357K	ENST00000357654	NM_007294.3	1357	Gaa/Aaa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213593	36213593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	110	914	1	ENST00000222270.7:c.2695C>T	p.Arg899Trp	p.R899W	ENST00000222270	NM_014727.1	899	Cgg/Tgg																																																																														
INHA	3623	MSKCC	GRCh37	2	220437253	220437253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	127	943	1	ENST00000243786.2:c.157C>T	p.Pro53Ser	p.P53S	ENST00000243786	NM_002191.3	53	Cct/Tct																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256464	46256464	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	65	404	0	ENST00000371998.3:c.692A>C	p.Gln231Pro	p.Q231P	ENST00000371998		231	cAg/cCg																																																																														
KDR	3791	MSKCC	GRCh37	4	55974045	55974045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	76	517	0	ENST00000263923.4:c.1271G>A	p.Gly424Asp	p.G424D	ENST00000263923	NM_002253.2	424	gGt/gAt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681580	30681580	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	60	501	0	ENST00000376406.3:c.517G>A	p.Asp173Asn	p.D173N	ENST00000376406	NM_014641.2	173	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500796	8500796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	46	371	0	ENST00000356435.5:c.2086G>A	p.Gly696Ser	p.G696S	ENST00000356435		696	Ggc/Agc																																																																														
ATRX	546	MSKCC	GRCh37	X	76813116	76813116	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	51	251	0	ENST00000373344.5:c.6505G>A	p.Gly2169Arg	p.G2169R	ENST00000373344	NM_000489.3	2169	Gga/Aga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	778	312	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	133	471	0				ENST00000310581	NM_198253.2																																																																																
ID3	3399	MSKCC	GRCh37	1	23885474	23885474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	30	420	0	ENST00000374561.5:c.337G>A	p.Asp113Asn	p.D113N	ENST00000374561	NM_002167.4	113	Gac/Aac																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885870	111885870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	115	750	2	ENST00000341259.2:c.1492C>T	p.Leu498Phe	p.L498F	ENST00000341259	NM_005475.2	498	Ctt/Ttt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11181312	11181313	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	451	598	1	ENST00000361445.4:c.6923_6924delinsTT	p.Pro2308Leu	p.P2308L	ENST00000361445	NM_004958.3	2308	cCC/cTT																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599253	28599254	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	360	988	0	ENST00000253063.3:c.699_700delinsTT	p.Pro234Ser	p.P234S	ENST00000253063	NM_031459.4	233	ccCCct/ccTTct																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941221	36941221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	298	883	0	ENST00000361632.4:c.118G>A	p.Asp40Asn	p.D40N	ENST00000361632		40	Gat/Aat																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843739	156843739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	1091	1174	0	ENST00000524377.1:c.1165G>A	p.Asp389Asn	p.D389N	ENST00000524377	NM_002529.3	389	Gac/Aac																																																																														
SDHC	6391	MSKCC	GRCh37	1	161326475	161326475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1409	280	896	0	ENST00000367975.2:c.250C>T	p.Leu84Phe	p.L84F	ENST00000367975	NM_003001.3	84	Ctt/Ttt																																																																														
PARP1	142	MSKCC	GRCh37	1	226558140	226558140	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	184	586	0	ENST00000366794.5:c.2149C>T	p.Gln717Ter	p.Q717*	ENST00000366794	NM_001618.3	717	Cag/Tag																																																																														
RET	5979	MSKCC	GRCh37	10	43615100	43615101	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	598	982	2	ENST00000355710.3:c.2514_2515delinsAA	p.Asp839Asn	p.D839N	ENST00000355710	NM_020975.4	838	ctGGac/ctAAac																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239471	123239471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	445	808	0	ENST00000358487.5:c.2366C>T	p.Ser789Phe	p.S789F	ENST00000358487	NM_000141.4	789	tCt/tTt																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195971	102195971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	268	334	0	ENST00000263464.3:c.731G>A	p.Arg244Lys	p.R244K	ENST00000263464	NM_001165.4	244	aGa/aAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343372	118343372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	136	434	0	ENST00000534358.1:c.1498C>T	p.Pro500Ser	p.P500S	ENST00000534358	NM_005933.3	500	Cct/Tct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343804	118343804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	564	541	0	ENST00000534358.1:c.1930C>T	p.Arg644Cys	p.R644C	ENST00000534358	NM_005933.3	644	Cgc/Tgc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374712	118374712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	414	477	0	ENST00000534358.1:c.8105C>T	p.Ser2702Phe	p.S2702F	ENST00000534358	NM_005933.3	2702	tCc/tTc																																																																														
CBL	867	MSKCC	GRCh37	11	119149241	119149242	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	500	636	1	ENST00000264033.4:c.1249_1250delinsAT	p.Pro417Ile	p.P417I	ENST00000264033	NM_005188.3	417	CCt/ATt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	441059	441059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	463	496	0	ENST00000399788.2:c.1699C>T	p.Pro567Ser	p.P567S	ENST00000399788	NM_001042603.1	567	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432401	49432401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	786	1038	0	ENST00000301067.7:c.8738C>T	p.Pro2913Leu	p.P2913L	ENST00000301067	NM_003482.3	2913	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445045	49445046	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	593	796	2	ENST00000301067.7:c.2420_2421delinsTT	p.Ser807Phe	p.S807F	ENST00000301067	NM_003482.3	807	tCC/tTT																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864540	57864540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	307	899	1	ENST00000228682.2:c.2017G>A	p.Gly673Arg	p.G673R	ENST00000228682	NM_005269.2	673	Gga/Aga																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813409	102813409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	205	615	0	ENST00000307046.8:c.280G>A	p.Glu94Lys	p.E94K	ENST00000307046	NM_001111285.1	94	Gag/Aag																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112884091	112884091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	161	575	0	ENST00000351677.2:c.26C>T	p.Pro9Leu	p.P9L	ENST00000351677	NM_002834.3	9	cCa/cTa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589742	28589742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	303	494	0	ENST00000241453.7:c.2638G>A	p.Glu880Lys	p.E880K	ENST00000241453	NM_004119.2	880	Gaa/Aaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28602314	28602314	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	326	567	0	ENST00000241453.7:c.2053+1G>A		p.X685_splice	ENST00000241453	NM_004119.2	685																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919626	28919626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	331	666	2	ENST00000282397.4:c.2311C>T	p.Leu771Phe	p.L771F	ENST00000282397	NM_002019.4	771	Ctc/Ttc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001438	29001438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	231	326	0	ENST00000282397.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000282397	NM_002019.4	432	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041073	29041073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	107	538	0	ENST00000282397.4:c.355G>A	p.Glu119Lys	p.E119K	ENST00000282397	NM_002019.4	119	Gaa/Aaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609655	81609655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	493	764	0	ENST00000298171.2:c.1253G>A	p.Arg418Lys	p.R418K	ENST00000298171	NM_000369.2	418	aGa/aAa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610608	81610608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	273	520	0	ENST00000298171.2:c.2206G>A	p.Glu736Lys	p.E736K	ENST00000298171	NM_000369.2	736	Gaa/Aaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472609	88472609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	330	566	0	ENST00000360948.2:c.1946G>A	p.Gly649Asp	p.G649D	ENST00000360948	NM_001012338.2	649	gGt/gAt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680747	88680748	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	250	760	1	ENST00000360948.2:c.509_510delinsAA	p.Trp170Ter	p.W170*	ENST00000360948	NM_001012338.2	170	tGG/tAA																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99452036	99452036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	501	467	0	ENST00000268035.6:c.1370C>T	p.Ser457Phe	p.S457F	ENST00000268035	NM_000875.3	457	tCc/tTc																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2093621	2093621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	350	1040	1	ENST00000219066.1:c.656C>T	p.Pro219Leu	p.P219L	ENST00000219066	NM_002528.5	219	cCc/cTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900423	3900423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	626	940	1	ENST00000262367.5:c.673C>T	p.Pro225Ser	p.P225S	ENST00000262367	NM_004380.2	225	Ccg/Tcg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857944	9857944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	480	669	1	ENST00000330684.3:c.3457G>A	p.Asp1153Asn	p.D1153N	ENST00000330684	NM_001134407.1	1153	Gat/Aat																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041996	14041996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	127	418	0	ENST00000311895.7:c.2543C>T	p.Pro848Leu	p.P848L	ENST00000311895	NM_005236.2	848	cCc/cTc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56864569	56864569	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	159	478	0	ENST00000308159.5:c.1057C>T	p.Gln353Ter	p.Q353*	ENST00000308159	NM_014669.4	353	Cag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68867302	68867302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	217	638	0	ENST00000261769.5:c.2549C>T	p.Ser850Phe	p.S850F	ENST00000261769	NM_004360.3	850	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993593	72993593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	253	787	0	ENST00000268489.5:c.452C>T	p.Thr151Ile	p.T151I	ENST00000268489	NM_006885.3	151	aCc/aTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81927337	81927338	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	572	897	1	ENST00000359376.3:c.1010_1011delinsAA	p.Arg337Gln	p.R337Q	ENST00000359376	NM_002661.3	337	cGG/cAA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	626	958	1	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108232	8108232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	531	833	1	ENST00000585124.1:c.992C>T	p.Ser331Phe	p.S331F	ENST00000585124	NM_004217.3	331	tCt/tTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29546086	29546086	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	324	582	0	ENST00000358273.4:c.1591C>T	p.Gln531Ter	p.Q531*	ENST00000358273	NM_001042492.2	531	Caa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29592305	29592305	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	218	440	0	ENST00000358273.4:c.4783C>T	p.Gln1595Ter	p.Q1595*	ENST00000358273	NM_001042492.2	1595	Caa/Taa																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369270	40369270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	385	651	1	ENST00000293328.3:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000293328	NM_012448.3	430	Cgt/Tgt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246713	41246713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	321	607	0	ENST00000357654.3:c.835C>T	p.His279Tyr	p.H279Y	ENST00000357654	NM_007294.3	279	Cat/Tat																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805706	46805706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	619	942	0	ENST00000290295.7:c.250G>A	p.Gly84Arg	p.G84R	ENST00000290295	NM_006361.5	84	Gga/Aga																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621008	1621008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	731	1054	2	ENST00000344749.5:c.1052C>T	p.Ser351Phe	p.S351F	ENST00000344749	NM_001136139.2	351	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221039	5221039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	426	705	0	ENST00000357368.4:c.3427C>T	p.Pro1143Ser	p.P1143S	ENST00000357368	NM_002850.3	1143	Cct/Tct																																																																														
INSR	3643	MSKCC	GRCh37	19	7117138	7117138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	578	910	0	ENST00000302850.5:c.4078C>T	p.Pro1360Ser	p.P1360S	ENST00000302850	NM_000208.2	1360	Cct/Tct																																																																														
CARM1	10498	MSKCC	GRCh37	19	11015752	11015752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	349	484	2	ENST00000327064.4:c.346G>A	p.Asp116Asn	p.D116N	ENST00000327064	NM_199141.1	116	Gat/Aat																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350516	15350517	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	670	901	2	ENST00000263377.2:c.3398_3399delinsTT	p.Pro1133Leu	p.P1133L	ENST00000263377	NM_058243.2	1133	cCC/cTT																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353723	15353723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	650	965	0	ENST00000263377.2:c.3157C>T	p.Pro1053Ser	p.P1053S	ENST00000263377	NM_058243.2	1053	Ccc/Tcc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19261496	19261496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	491	719	1	ENST00000162023.5:c.49C>T	p.Arg17Trp	p.R17W	ENST00000162023		17	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216626	36216627	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	530	869	3	ENST00000222270.7:c.3792_3793delinsTT	p.Leu1265Phe	p.L1265F	ENST00000222270	NM_014727.1	1264	caCCtc/caTTtc																																																																														
AXL	558	MSKCC	GRCh37	19	41743975	41743975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	702	1018	0	ENST00000301178.4:c.910C>T	p.Pro304Ser	p.P304S	ENST00000301178	NM_021913.4	304	Cct/Tct																																																																														
AXL	558	MSKCC	GRCh37	19	41758775	41758775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	674	1001	1	ENST00000301178.4:c.1829G>A	p.Arg610Gln	p.R610Q	ENST00000301178	NM_021913.4	610	cGa/cAa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25466778	25466778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	714	682	0	ENST00000264709.3:c.1925G>A	p.Gly642Glu	p.G642E	ENST00000264709	NM_175629.2	642	gGa/gAa																																																																														
REL	5966	MSKCC	GRCh37	2	61128146	61128146	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	275	356	0	ENST00000295025.8:c.322C>T	p.Arg108Ter	p.R108*	ENST00000295025	NM_002908.2	108	Cga/Tga																																																																														
XPO1	7514	MSKCC	GRCh37	2	61726900	61726900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	124	454	0	ENST00000401558.2:c.538G>A	p.Asp180Asn	p.D180N	ENST00000401558	NM_003400.3	180	Gat/Aat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251853	212251853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	238	347	0	ENST00000342788.4:c.3206G>A	p.Gly1069Glu	p.G1069E	ENST00000342788	NM_005235.2	1069	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426665	212426665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	166	629	1	ENST00000342788.4:c.2450C>T	p.Ser817Leu	p.S817L	ENST00000342788	NM_005235.2	817	tCa/tTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426789	212426789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	163	501	0	ENST00000342788.4:c.2326G>A	p.Asp776Asn	p.D776N	ENST00000342788	NM_005235.2	776	Gat/Aat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530085	212530085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	328	339	0	ENST00000342788.4:c.1834C>T	p.Arg612Trp	p.R612W	ENST00000342788	NM_005235.2	612	Cgg/Tgg																																																																														
BARD1	580	MSKCC	GRCh37	2	215632269	215632269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	153	542	1	ENST00000260947.4:c.1505C>T	p.Ala502Val	p.A502V	ENST00000260947	NM_000465.2	502	gCc/gTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9560902	9560902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	182	632	0	ENST00000353224.5:c.880G>A	p.Glu294Lys	p.E294K	ENST00000353224	NM_177990.2	294	Gaa/Aaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561543	9561543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	571	635	0	ENST00000353224.5:c.239C>T	p.Thr80Ile	p.T80I	ENST00000353224	NM_177990.2	80	aCc/aTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561564	9561564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	474	575	0	ENST00000353224.5:c.218G>A	p.Gly73Glu	p.G73E	ENST00000353224	NM_177990.2	73	gGa/gAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739037	40739037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1203	265	710	0	ENST00000373198.4:c.3247G>A	p.Gly1083Ser	p.G1083S	ENST00000373198	NM_133170.3	1083	Ggc/Agc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747103	40747103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	244	709	0	ENST00000373198.4:c.2979G>A	p.Met993Ile	p.M993I	ENST00000373198	NM_133170.3	993	atG/atA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877408	40877408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	843	668	0	ENST00000373198.4:c.2288C>T	p.Thr763Ile	p.T763I	ENST00000373198	NM_133170.3	763	aCc/aTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944527	40944527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	809	609	0	ENST00000373198.4:c.1975G>A	p.Asp659Asn	p.D659N	ENST00000373198	NM_133170.3	659	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514563	41514563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	169	499	0	ENST00000373198.4:c.98C>T	p.Ser33Phe	p.S33F	ENST00000373198	NM_133170.3	33	tCc/tTc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62298863	62298863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1442	332	819	1	ENST00000508582.2:c.728C>T	p.Ala243Val	p.A243V	ENST00000508582		243	gCc/gTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39775521	39775521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	384	733	0	ENST00000288319.7:c.499G>A	p.Glu167Lys	p.E167K	ENST00000288319	NM_182918.3	167	Gaa/Aaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164466	47164467	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	102	371	0	ENST00000409792.3:c.1659_1660delinsTT	p.Arg554Cys	p.R554C	ENST00000409792	NM_014159.6	553	tcCCgt/tcTTgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445106	89445106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	92	372	0	ENST00000336596.2:c.1426G>A	p.Glu476Lys	p.E476K	ENST00000336596	NM_005233.5	476	Gaa/Aaa																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119634978	119634978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	222	314	1	ENST00000316626.5:c.521C>T	p.Ser174Phe	p.S174F	ENST00000316626		174	tCc/tTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960122	134960122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	224	672	0	ENST00000398015.3:c.2479G>A	p.Asp827Asn	p.D827N	ENST00000398015	NM_004441.4	827	Gat/Aat																																																																														
ATR	545	MSKCC	GRCh37	3	142176527	142176527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	153	557	0	ENST00000350721.4:c.7574C>T	p.Pro2525Leu	p.P2525L	ENST00000350721	NM_001184.3	2525	cCt/cTt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191527	185191527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	236	608	1	ENST00000265026.3:c.2408G>A	p.Arg803Gln	p.R803Q	ENST00000265026	NM_004721.4	803	cGa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189455576	189455576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	248	573	1	ENST00000264731.3:c.110G>A	p.Arg37Gln	p.R37Q	ENST00000264731	NM_003722.4	37	cGa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189584549	189584549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	296	482	0	ENST00000264731.3:c.845G>A	p.Gly282Glu	p.G282E	ENST00000264731	NM_003722.4	282	gGa/gAa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806164	1806164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	340	1004	1	ENST00000260795.2:c.1183C>T	p.Leu395Phe	p.L395F	ENST00000260795		395	Ctc/Ttc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146616	55146616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34392012		P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	349	626	0	ENST00000257290.5:c.2290C>T	p.Arg764Cys	p.R764C	ENST00000257290	NM_006206.4	764	Cgt/Tgt																																																																														
KDR	3791	MSKCC	GRCh37	4	55948196	55948196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	137	616	1	ENST00000263923.4:c.3775G>A	p.Asp1259Asn	p.D1259N	ENST00000263923	NM_002253.2	1259	Gac/Aac																																																																														
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	177	567	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968582	55968582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	206	709	0	ENST00000263923.4:c.2081C>T	p.Pro694Leu	p.P694L	ENST00000263923	NM_002253.2	694	cCc/cTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510336	187510336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	109	300	0	ENST00000441802.2:c.13177C>T	p.Pro4393Ser	p.P4393S	ENST00000441802	NM_005245.3	4393	Cct/Tct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530980	187530980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	295	526	1	ENST00000441802.2:c.10043C>T	p.Ala3348Val	p.A3348V	ENST00000441802	NM_005245.3	3348	gCc/gTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539623	187539623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	242	432	0	ENST00000441802.2:c.8117C>T	p.Pro2706Leu	p.P2706L	ENST00000441802	NM_005245.3	2706	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1268746	1268746	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	550	856	5	ENST00000310581.5:c.2471C>T	p.Ser824Phe	p.S824F	ENST00000310581	NM_198253.2	824	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	356	521	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35875645	35875645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201449880		P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	248	386	0	ENST00000303115.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000303115	NM_002185.3	278	Gat/Aat																																																																														
MSH3	4437	MSKCC	GRCh37	5	80064748	80064748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	243	583	0	ENST00000265081.6:c.2179C>T	p.Arg727Ter	p.R727*	ENST00000265081	NM_002439.4	727	Cga/Tga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047190	180047190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	609	847	1	ENST00000261937.6:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000261937	NM_182925.4	842	cGa/cAa																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158577	26158578	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	352	644	1	ENST00000289316.2:c.180_181delinsAA	p.Met60_Gly61delinsIleArg	p.M60_G61delinsIR	ENST00000289316	NM_138720.2	60	atGGgg/atAAgg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680751	30680751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	205	585	0	ENST00000376406.3:c.968C>T	p.Pro323Leu	p.P323L	ENST00000376406	NM_014641.2	323	cCt/cTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169252	32169252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	536	782	0	ENST00000375023.3:c.3781G>A	p.Asp1261Asn	p.D1261N	ENST00000375023	NM_004557.3	1261	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170030	32170030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	690	1073	0	ENST00000375023.3:c.3578G>A	p.Gly1193Asp	p.G1193D	ENST00000375023	NM_004557.3	1193	gGc/gAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188281	32188281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	701	964	0	ENST00000375023.3:c.1060G>A	p.Glu354Lys	p.E354K	ENST00000375023	NM_004557.3	354	Gag/Aag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066762	94066762	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	124	422	0	ENST00000369303.4:c.997T>A	p.Ser333Thr	p.S333T	ENST00000369303	NM_004440.3	333	Tct/Act																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553324	106553324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	422	584	1	ENST00000369096.4:c.1289G>A	p.Ser430Asn	p.S430N	ENST00000369096	NM_001198.3	430	aGc/aAc																																																																														
FYN	2534	MSKCC	GRCh37	6	112029135	112029135	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	122	408	0	ENST00000368678.4:c.433C>T	p.Gln145Ter	p.Q145*	ENST00000368678		145	Cag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622137	117622137	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs142264513		P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	82	355	0	ENST00000368508.3:c.6733G>A	p.Gly2245Ser	p.G2245S	ENST00000368508	NM_002944.2	2245	Ggt/Agt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715330	117715330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	156	312	0	ENST00000368508.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000368508	NM_002944.2	387	Gaa/Aaa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332843	152332843	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	185	529	1	ENST00000206249.3:c.1149G>A	p.Trp383Ter	p.W383*	ENST00000206249	NM_000125.3	383	tgG/tgA																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522299	157522299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	579	746	0	ENST00000346085.5:c.4571C>T	p.Ser1524Leu	p.S1524L	ENST00000346085	NM_020732.3	1524	tCg/tTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984094	2984094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	350	584	0	ENST00000396946.4:c.436G>A	p.Asp146Asn	p.D146N	ENST00000396946	NM_032415.4	146	Gac/Aac																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026826	6026827	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	434	636	1	ENST00000265849.7:c.1569_1570delinsTT	p.Pro524Ser	p.P524S	ENST00000265849	NM_000535.5	523	tcCCca/tcTTca																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	355	467	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946203	13946203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	476	491	0	ENST00000405192.2:c.893G>A	p.Gly298Glu	p.G298E	ENST00000405192	NM_001163147.1	298	gGa/gAa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729763	41729763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	340	462	0	ENST00000242208.4:c.766C>T	p.Leu256Phe	p.L256F	ENST00000242208	NM_002192.2	256	Ctc/Ttc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450363	50450363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	229	600	0	ENST00000331340.3:c.547C>T	p.Arg183Cys	p.R183C	ENST00000331340	NM_006060.4	183	Cgc/Tgc																																																																														
CDK6	1021	MSKCC	GRCh37	7	92252390	92252390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	149	327	1	ENST00000265734.4:c.658C>T	p.Arg220Cys	p.R220C	ENST00000265734	NM_001259.6	220	Cgt/Tgt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508910	106508910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	446	571	0	ENST00000359195.3:c.904G>A	p.Glu302Lys	p.E302K	ENST00000359195	NM_002649.2	302	Gag/Aag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38153446	38153446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	622	523	0	ENST00000317025.8:c.2783C>T	p.Ser928Leu	p.S928L	ENST00000317025	NM_023034.1	928	tCg/tTg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38277160	38277160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	1042	771	0	ENST00000425967.3:c.1268G>A	p.Gly423Glu	p.G423E	ENST00000425967	NM_001174067.1	423	gGg/gAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68989689	68989690	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	303	655	0	ENST00000288368.4:c.1627_1628delinsAA	p.Gly543Lys	p.G543K	ENST00000288368	NM_024870.2	543	GGa/AAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005933	69005933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	254	623	0	ENST00000288368.4:c.2344G>A	p.Asp782Asn	p.D782N	ENST00000288368	NM_024870.2	782	Gat/Aat																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970964	70970964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1344	493	924	0	ENST00000276594.2:c.1297C>T	p.Pro433Ser	p.P433S	ENST00000276594	NM_024504.3	433	Ccc/Tcc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5044504	5044504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	401	436	0	ENST00000381652.3:c.452C>T	p.Ser151Phe	p.S151F	ENST00000381652	NM_004972.3	151	tCt/tTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8339038	8339038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	389	465	1	ENST00000356435.5:c.5263C>T	p.His1755Tyr	p.H1755Y	ENST00000356435		1755	Cac/Tac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486041	8486041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	561	661	0	ENST00000356435.5:c.2776C>T	p.His926Tyr	p.H926Y	ENST00000356435		926	Cac/Tac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517990	8517990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	143	486	0	ENST00000356435.5:c.1401G>A	p.Met467Ile	p.M467I	ENST00000356435		467	atG/atA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518111	8518111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	199	535	0	ENST00000356435.5:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000356435		427	cGa/cAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27190619	27190619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	581	731	0	ENST00000380036.4:c.1420G>A	p.Gly474Arg	p.G474R	ENST00000380036	NM_000459.3	474	Gga/Aga																																																																														
TEK	7010	MSKCC	GRCh37	9	27204953	27204953	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45510599		P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	205	615	0	ENST00000380036.4:c.2254C>T	p.Leu752Phe	p.L752F	ENST00000380036	NM_000459.3	752	Ctt/Ttt																																																																														
PAX5	5079	MSKCC	GRCh37	9	36882004	36882004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	973	789	1	ENST00000358127.4:c.1009C>T	p.Pro337Ser	p.P337S	ENST00000358127	NM_001280556.1	337	Cct/Tct																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101911463	101911463	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	221	232	0	ENST00000374994.4:c.1388C>T	p.Ala463Val	p.A463V	ENST00000374994	NM_004612.2	463	gCc/gTc																																																																														
ABL1	25	MSKCC	GRCh37	9	133759395	133759395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	284	830	1	ENST00000318560.5:c.1718C>T	p.Pro573Leu	p.P573L	ENST00000318560	NM_005157.4	573	cCt/cTt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135801003	135801003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	138	478	0	ENST00000298552.3:c.334C>T	p.Leu112Phe	p.L112F	ENST00000298552	NM_001162426.1	112	Ctt/Ttt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396736	139396736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	853	929	0	ENST00000277541.6:c.5372C>T	p.Ser1791Phe	p.S1791F	ENST00000277541	NM_017617.3	1791	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400119	139400119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	1069	1073	0	ENST00000277541.6:c.4229C>T	p.Pro1410Leu	p.P1410L	ENST00000277541	NM_017617.3	1410	cCc/cTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412337	139412337	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	302	931	0	ENST00000277541.6:c.1308C>G	p.Phe436Leu	p.F436L	ENST00000277541	NM_017617.3	436	ttC/ttG																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923820	39923820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	602	885	0	ENST00000378444.4:c.3271C>T	p.Pro1091Ser	p.P1091S	ENST00000378444	NM_001123385.1	1091	Ccc/Tcc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409829	63409829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	202	601	0	ENST00000330258.3:c.3338G>A	p.Arg1113Lys	p.R1113K	ENST00000330258	NM_152424.3	1113	aGg/aAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411524	63411524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	629	933	1	ENST00000330258.3:c.1643C>T	p.Ser548Phe	p.S548F	ENST00000330258	NM_152424.3	548	tCc/tTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412679	63412679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	661	729	1	ENST00000330258.3:c.488C>T	p.Pro163Leu	p.P163L	ENST00000330258	NM_152424.3	163	cCc/cTc																																																																														
AR	367	MSKCC	GRCh37	X	66765506	66765506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	994	1036	1	ENST00000374690.3:c.518G>A	p.Gly173Asp	p.G173D	ENST00000374690	NM_000044.3	173	gGc/gAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70344992	70344992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	716	650	0	ENST00000374080.3:c.2222C>T	p.Pro741Leu	p.P741L	ENST00000374080		741	cCc/cTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70351928	70351928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	577	625	0	ENST00000374080.3:c.4125G>A	p.Met1375Ile	p.M1375I	ENST00000374080		1375	atG/atA																																																																														
ATRX	546	MSKCC	GRCh37	X	76939496	76939496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	484	677	0	ENST00000373344.5:c.1252C>T	p.Arg418Ter	p.R418*	ENST00000373344	NM_000489.3	418	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76954116	76954116	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	288	364	0	ENST00000373344.5:c.135T>A	p.Asp45Glu	p.D45E	ENST00000373344	NM_000489.3	45	gaT/gaA																																																																														
BTK	695	MSKCC	GRCh37	X	100630211	100630211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	472	618	0	ENST00000308731.7:c.62C>T	p.Ser21Leu	p.S21L	ENST00000308731	NM_000061.2	21	tCa/tTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191747	123191747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	314	472	0	ENST00000218089.9:c.1336G>A	p.Gly446Arg	p.G446R	ENST00000218089	NM_001042749.1	446	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	184	501	0				ENST00000310581	NM_198253.2																																																																																
NF1	4763	MSKCC	GRCh37	17	29508779	29508779	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	220	610	0	ENST00000358273.4:c.706C>T	p.Gln236Ter	p.Q236*	ENST00000358273	NM_001042492.2	236	Cag/Tag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40476813	40476813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	344	762	0	ENST00000264657.5:c.1516G>A	p.Glu506Lys	p.E506K	ENST00000264657	NM_139276.2	506	Gag/Aag																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987076	36987076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	334	719	1	ENST00000354822.5:c.613G>A	p.Glu205Lys	p.E205K	ENST00000354822	NM_001079668.2	205	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49439896	49439896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	399	770	0	ENST00000301067.7:c.4645G>A	p.Glu1549Lys	p.E1549K	ENST00000301067	NM_003482.3	1549	Gaa/Aaa																																																																														
CBL	867	MSKCC	GRCh37	11	119148991	119148991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	319	570	0	ENST00000264033.4:c.1211G>T	p.Cys404Phe	p.C404F	ENST00000264033	NM_005188.3	404	tGt/tTt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724448	162724448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	254	560	0	ENST00000367921.3:c.220C>T	p.Pro74Ser	p.P74S	ENST00000367921	NM_006182.2	74	Cct/Tct																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577469	64577469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	285	624	0	ENST00000337652.1:c.113C>A	p.Ser38Tyr	p.S38Y	ENST00000337652	NM_130803.2	38	tCc/tAc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619823	1619823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	755	773	0	ENST00000344749.5:c.1123C>T	p.Pro375Ser	p.P375S	ENST00000344749	NM_001136139.2	375	Ccc/Tcc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128030488	128030488	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	327	647	0	ENST00000285398.2:c.1780C>T	p.Gln594Ter	p.Q594*	ENST00000285398	NM_000122.1	594	Cag/Tag																																																																														
ERG	2078	MSKCC	GRCh37	21	39755405	39755405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	262	715	0	ENST00000288319.7:c.1360A>G	p.Asn454Asp	p.N454D	ENST00000288319	NM_182918.3	454	Aat/Gat																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927393	49927393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	392	792	0	ENST00000296474.3:c.3911G>T	p.Arg1304Leu	p.R1304L	ENST00000296474	NM_002447.2	1304	cGg/cTg																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858062	152858062	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	278	318	0	ENST00000406277.2:c.553C>T	p.Gln185Ter	p.Q185*	ENST00000406277	NM_152274.4	185	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	214	291	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	252	353	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	252	353	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857524	9857524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	559	446	0	ENST00000330684.3:c.3877G>A	p.Asp1293Asn	p.D1293N	ENST00000330684	NM_001134407.1	1293	Gat/Aat																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859016	57859016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	202	725	0	ENST00000228682.2:c.512G>A	p.Arg171Gln	p.R171Q	ENST00000228682	NM_005269.2	171	cGg/cAg																																																																														
KDR	3791	MSKCC	GRCh37	4	55972913	55972913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	316	575	0	ENST00000263923.4:c.1477G>A	p.Gly493Arg	p.G493R	ENST00000263923	NM_002253.2	493	Gga/Aga																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9787030	9787030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	810	534	1	ENST00000377346.4:c.3061G>A	p.Glu1021Lys	p.E1021K	ENST00000377346	NM_005026.3	1021	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	252	353	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266485	198266485	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	106	279	0	ENST00000335508.6:c.2351T>C	p.Met784Thr	p.M784T	ENST00000335508	NM_012433.2	784	aTg/aCg																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	822	734	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745609	162745609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	137	458	0	ENST00000367921.3:c.2024C>T	p.Ser675Phe	p.S675F	ENST00000367921	NM_006182.2	675	tCc/tTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476403	88476403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	298	473	0	ENST00000360948.2:c.1729C>T	p.Pro577Ser	p.P577S	ENST00000360948	NM_001012338.2	577	Ccc/Tcc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672800	86672800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	88	355	0	ENST00000274376.6:c.2287G>A	p.Glu763Lys	p.E763K	ENST00000274376	NM_002890.2	763	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521067	187521067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	150	401	0	ENST00000441802.2:c.12088C>T	p.Pro4030Ser	p.P4030S	ENST00000441802	NM_005245.3	4030	Ccg/Tcg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38173545	38173545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	303	364	1	ENST00000317025.8:c.1871C>T	p.Ser624Leu	p.S624L	ENST00000317025	NM_023034.1	624	tCa/tTa																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165783	118165783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	238	389	0	ENST00000369448.3:c.293C>T	p.Ala98Val	p.A98V	ENST00000369448	NM_017709.3	98	gCt/gTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510217	120510217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	131	373	0	ENST00000256646.2:c.1292G>A	p.Gly431Glu	p.G431E	ENST00000256646	NM_024408.3	431	gGa/gAa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589385	28589385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	235	421	0	ENST00000241453.7:c.2662C>T	p.Pro888Ser	p.P888S	ENST00000241453	NM_004119.2	888	Cct/Tct																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576180	88576180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	197	650	0	ENST00000360948.2:c.1493C>T	p.Pro498Leu	p.P498L	ENST00000360948	NM_001012338.2	498	cCc/cTc																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349103	11349103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	128	318	0	ENST00000332029.2:c.233G>A	p.Gly78Glu	p.G78E	ENST00000332029	NM_003745.1	78	gGa/gAa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50818352	50818352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	179	277	0	ENST00000398568.2:c.1930C>T	p.Pro644Ser	p.P644S	ENST00000398568	NM_001042412.1	644	Cct/Tct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448342	56448342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	248	797	0	ENST00000407977.2:c.305G>A	p.Gly102Glu	p.G102E	ENST00000407977		102	gGa/gAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790090	40790090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	366	621	0	ENST00000373198.4:c.2641C>G	p.Arg881Gly	p.R881G	ENST00000373198	NM_133170.3	881	Cgg/Ggg																																																																														
TET2	54790	MSKCC	GRCh37	4	106196646	106196646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	278	503	0	ENST00000380013.4:c.4979G>A	p.Arg1660Lys	p.R1660K	ENST00000380013	NM_001127208.2	1660	aGg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1293790	1293790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	288	977	0	ENST00000310581.5:c.1211C>T	p.Pro404Leu	p.P404L	ENST00000310581	NM_198253.2	404	cCc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112173792	112173792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	108	320	0	ENST00000257430.4:c.2501C>T	p.Ser834Phe	p.S834F	ENST00000257430	NM_000038.5	834	tCc/tTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721607	176721607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	163	556	0	ENST00000439151.2:c.7238C>T	p.Ser2413Phe	p.S2413F	ENST00000439151	NM_022455.4	2413	tCt/tTt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056973	180056973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	256	836	1	ENST00000261937.6:c.646C>A	p.Leu216Ile	p.L216I	ENST00000261937	NM_182925.4	216	Ctt/Att																																																																														
BRAF	673	MSKCC	GRCh37	7	140453131	140453136	+	protein_altering_variant	In_Frame_Del	DEL	ATTTCA	ATTTCA	TAT			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	284	433	1	ENST00000288602.6:c.1799_1804delinsATA	p.Val600_Ser602delinsAspThr	p.V600_S602delinsDT	ENST00000288602	NM_004333.4	600	gTGAAATct/gATAct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518308	8518308	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	151	223	0	ENST00000356435.5:c.1083A>T	p.Lys361Asn	p.K361N	ENST00000356435		361	aaA/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76938305	76938305	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	164	263	0	ENST00000373344.5:c.2443T>G	p.Ser815Ala	p.S815A	ENST00000373344	NM_000489.3	815	Tct/Gct																																																																														
BTK	695	MSKCC	GRCh37	X	100615576	100615576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	436	249	0	ENST00000308731.7:c.756G>A	p.Trp252Ter	p.W252*	ENST00000308731	NM_000061.2	252	tgG/tgA																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	110	710	2	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713457	30713457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	92	698	1	ENST00000359013.4:c.857C>T	p.Ala286Val	p.A286V	ENST00000359013	NM_001024847.2	286	gCc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	66	452	0				ENST00000310581	NM_198253.2																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157470057	157470057	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	77	530	0	ENST00000346085.5:c.2851C>T	p.Gln951Ter	p.Q951*	ENST00000346085	NM_020732.3	951	Cag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133209262	133209262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147954675		P-0039629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	146	941	1	ENST00000320574.5:c.6124G>A	p.Gly2042Arg	p.G2042R	ENST00000320574	NM_006231.2	2042	Gga/Aga																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631532	28631532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	57	514	0	ENST00000241453.7:c.436C>T	p.Gln146Ter	p.Q146*	ENST00000241453	NM_004119.2	146	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	291	279	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	208	284	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	282	322	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	282	322	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673725	30673725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78556678		P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	88	476	0	ENST00000376406.3:c.3235C>T	p.Arg1079Cys	p.R1079C	ENST00000376406	NM_014641.2	1079	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	282	322	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29083947	29083947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	40	164	0	ENST00000328354.6:c.1570G>A	p.Glu524Lys	p.E524K	ENST00000328354	NM_007194.3	524	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116435988	116435988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	492	510	0	ENST00000397752.3:c.3983C>T	p.Pro1328Leu	p.P1328L	ENST00000397752	NM_000245.2	1328	cCa/cTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413114	63413114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	158	598	0	ENST00000330258.3:c.53G>A	p.Gly18Glu	p.G18E	ENST00000330258	NM_152424.3	18	gGg/gAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094322	27094322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	105	350	0	ENST00000324856.7:c.3030G>T	p.Lys1010Asn	p.K1010N	ENST00000324856	NM_006015.4	1010	aaG/aaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436532	49436532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	109	494	0	ENST00000301067.7:c.5774T>A	p.Phe1925Tyr	p.F1925Y	ENST00000301067	NM_003482.3	1925	tTt/tAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448350	49448351	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	107	532	0	ENST00000301067.7:c.360_361delinsTT	p.Pro121Ser	p.P121S	ENST00000301067	NM_003482.3	120	ttCCct/ttTTct																																																																														
DICER1	23405	MSKCC	GRCh37	14	95584063	95584063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	134	260	0	ENST00000343455.3:c.1405C>T	p.Pro469Ser	p.P469S	ENST00000343455	NM_177438.2	469	Cca/Tca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537890	212537890	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	90	360	0	ENST00000342788.4:c.1715C>A	p.Pro572Gln	p.P572Q	ENST00000342788	NM_005235.2	572	cCg/cAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161999	47161999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	108	299	0	ENST00000409792.3:c.4127C>T	p.Ser1376Phe	p.S1376F	ENST00000409792	NM_014159.6	1376	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662386	117662386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	143	370	0	ENST00000368508.3:c.4991C>T	p.Ser1664Phe	p.S1664F	ENST00000368508	NM_002944.2	1664	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874418	151874418	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	120	249	0	ENST00000262189.6:c.8120T>C	p.Val2707Ala	p.V2707A	ENST00000262189	NM_170606.2	2707	gTt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	189	672	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161718	47161718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	55	272	0	ENST00000409792.3:c.4408C>T	p.Pro1470Ser	p.P1470S	ENST00000409792	NM_014159.6	1470	Cca/Tca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747137	40747137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	77	496	0	ENST00000373198.4:c.2945C>T	p.Pro982Leu	p.P982L	ENST00000373198	NM_133170.3	982	cCg/cTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37871777	37871777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147382623		P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	158	730	2	ENST00000269571.5:c.1301G>A	p.Arg434Gln	p.R434Q	ENST00000269571		434	cGa/cAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812335	212812335	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	19	256	0	ENST00000342788.4:c.241C>T	p.Arg81Ter	p.R81*	ENST00000342788	NM_005235.2	81	Cga/Tga																																																																														
CBL	867	MSKCC	GRCh37	11	119149260	119149260	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	114	649	2	ENST00000264033.4:c.1268T>A	p.Ile423Asn	p.I423N	ENST00000264033	NM_005188.3	423	aTt/aAt																																																																														
WT1	7490	MSKCC	GRCh37	11	32414262	32414262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144788858		P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	171	467	0	ENST00000332351.3:c.1289G>A	p.Arg430Gln	p.R430Q	ENST00000332351	NM_024426.4	430	cGa/cAa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045755	143045755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	37	464	0	ENST00000262992.4:c.1879G>A	p.Val627Ile	p.V627I	ENST00000262992	NM_001101669.1	627	Gtc/Atc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100312	27100312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	134	697	1	ENST00000324856.7:c.4024C>T	p.Gln1342Ter	p.Q1342*	ENST00000324856	NM_006015.4	1342	Cag/Tag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022562	31022562	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	132	625	0	ENST00000375687.4:c.2047A>G	p.Thr683Ala	p.T683A	ENST00000375687	NM_015338.5	683	Acc/Gcc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931901	68931901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	84	528	0	ENST00000288368.4:c.331C>T	p.His111Tyr	p.H111Y	ENST00000288368	NM_024870.2	111	Cac/Tac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681033	117681033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	81	494	0	ENST00000368508.3:c.3587G>A	p.Gly1196Glu	p.G1196E	ENST00000368508	NM_002944.2	1196	gGa/gAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106196487	106196487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	48	391	0	ENST00000380013.4:c.4820C>T	p.Ser1607Leu	p.S1607L	ENST00000380013	NM_001127208.2	1607	tCa/tTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140482840	140482840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	128	650	0	ENST00000288602.6:c.1295C>T	p.Ser432Leu	p.S432L	ENST00000288602	NM_004333.4	432	tCa/tTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770576	40770576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	97	486	0	ENST00000373198.4:c.2806C>T	p.Arg936Ter	p.R936*	ENST00000373198	NM_133170.3	936	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709176	117709176	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	54	297	0	ENST00000368508.3:c.1781T>A	p.Ile594Asn	p.I594N	ENST00000368508	NM_002944.2	594	aTt/aAt																																																																														
AR	367	MSKCC	GRCh37	X	66765070	66765070	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	152	444	0	ENST00000374690.3:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000374690	NM_000044.3	28	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	78	535	0				ENST00000310581	NM_198253.2																																																																																
ROS1	6098	MSKCC	GRCh37	6	117609672	117609672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	63	353	0	ENST00000368508.3:c.7027G>A	p.Gly2343Arg	p.G2343R	ENST00000368508	NM_002944.2	2343	Gga/Aga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272383	11272383	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	107	502	1	ENST00000361445.4:c.3547C>T	p.Gln1183Ter	p.Q1183*	ENST00000361445	NM_004958.3	1183	Cag/Tag																																																																														
PGR	5241	MSKCC	GRCh37	11	100999053	100999053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1584	84	705	0	ENST00000325455.5:c.749del	p.Gly250GlufsTer51	p.G250Efs*51	ENST00000325455	NM_001202474.3	250	gGa/ga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865183	57865183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	222	939	0	ENST00000228682.2:c.2660C>T	p.Thr887Ile	p.T887I	ENST00000228682	NM_005269.2	887	aCc/aTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133219249	133219249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	139	748	0	ENST00000320574.5:c.4795G>A	p.Glu1599Lys	p.E1599K	ENST00000320574	NM_006231.2	1599	Gaa/Aaa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95579538	95579538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	57	363	0	ENST00000343455.3:c.1931A>G	p.Asp644Gly	p.D644G	ENST00000343455	NM_177438.2	644	gAt/gGt																																																																														
MGA	23269	MSKCC	GRCh37	15	41961580	41961580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	28	549	0	ENST00000219905.7:c.488C>T	p.Pro163Leu	p.P163L	ENST00000219905	NM_001164273.1	163	cCt/cTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845592	72845592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	172	728	0	ENST00000268489.5:c.3748C>T	p.Pro1250Ser	p.P1250S	ENST00000268489	NM_006885.3	1250	Ccc/Tcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562721	29562722	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	78	455	1	ENST00000358273.4:c.3801_3802delinsAA	p.Ala1268Thr	p.A1268T	ENST00000358273	NM_001042492.2	1267	ttGGca/ttAAca																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719250	61719250	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	41	377	0	ENST00000401558.2:c.1807C>T	p.Gln603Ter	p.Q603*	ENST00000401558	NM_003400.3	603	Cag/Tag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663276	227663276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	65	596	1	ENST00000305123.5:c.179C>T	p.Pro60Leu	p.P60L	ENST00000305123	NM_005544.2	60	cCc/cTc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22142599	22142599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	106	512	0	ENST00000215832.6:c.803C>T	p.Pro268Leu	p.P268L	ENST00000215832	NM_002745.4	268	cCa/cTa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799878	72799878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	167	458	0	ENST00000325599.8:c.1291G>A	p.Glu431Lys	p.E431K	ENST00000325599	NM_018130.2	431	Gag/Aag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89457253	89457253	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	80	353	0	ENST00000336596.2:c.1734A>T	p.Glu578Asp	p.E578D	ENST00000336596	NM_005233.5	578	gaA/gaT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480399	89480399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	97	313	0	ENST00000336596.2:c.2236G>A	p.Asp746Asn	p.D746N	ENST00000336596	NM_005233.5	746	Gac/Aac																																																																														
KIT	3815	MSKCC	GRCh37	4	55599339	55599339	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	77	422	0	ENST00000288135.5:c.2465A>T	p.Asn822Ile	p.N822I	ENST00000288135	NM_000222.2	822	aAt/aTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55976834	55976834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	72	530	0	ENST00000263923.4:c.1078C>T	p.Pro360Ser	p.P360S	ENST00000263923	NM_002253.2	360	Cca/Tca																																																																														
APC	324	MSKCC	GRCh37	5	112179156	112179156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	44	339	0	ENST00000257430.4:c.7865C>T	p.Pro2622Leu	p.P2622L	ENST00000257430	NM_000038.5	2622	cCc/cTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979375	93979375	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	41	332	0	ENST00000369303.4:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000369303	NM_004440.3	485	Caa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663616	117663616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	108	502	0	ENST00000368508.3:c.4616C>T	p.Pro1539Leu	p.P1539L	ENST00000368508	NM_002944.2	1539	cCt/cTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710657	117710657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	56	340	0	ENST00000368508.3:c.1615G>A	p.Glu539Lys	p.E539K	ENST00000368508	NM_002944.2	539	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117714445	117714445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	74	385	0	ENST00000368508.3:c.1204G>A	p.Glu402Lys	p.E402K	ENST00000368508	NM_002944.2	402	Gaa/Aaa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13978791	13978791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	145	671	0	ENST00000405192.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000405192	NM_001163147.1	106	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151932999	151932999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	19	84	0	ENST00000262189.6:c.2672C>T	p.Pro891Leu	p.P891L	ENST00000262189	NM_170606.2	891	cCa/cTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132732	152132732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	108	369	0	ENST00000262189.6:c.140C>T	p.Pro47Leu	p.P47L	ENST00000262189	NM_170606.2	47	cCt/cTt																																																																														
NBN	4683	MSKCC	GRCh37	8	90960083	90960083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	46	300	0	ENST00000265433.3:c.1883A>G	p.Glu628Gly	p.E628G	ENST00000265433	NM_002485.4	628	gAa/gGa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340429	8340429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	117	510	0	ENST00000356435.5:c.5167G>A	p.Glu1723Lys	p.E1723K	ENST00000356435		1723	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486341	8486342	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AT			P-0040246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	66	285	0	ENST00000356435.5:c.2475_2476delinsAT	p.Lys826Ter	p.K826*	ENST00000356435		825	ggGAaa/ggATaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103804	47103804	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0043860-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			839	359	509	0	ENST00000409792.3:c.6142A>T	p.Arg2048Ter	p.R2048*	ENST00000409792	NM_014159.6	2048	Aga/Tga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47142950	47142951	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0043860-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			540	172	341	0	ENST00000409792.3:c.5012_5013del	p.Tyr1671TrpfsTer40	p.Y1671Wfs*40	ENST00000409792	NM_014159.6	1671	tAT/t																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	14	288	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	137	303	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
STK40	83931	MSKCC	GRCh37	1	36821031	36821031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	185	527	0	ENST00000373129.3:c.346C>T	p.Arg116Cys	p.R116C	ENST00000373129	NM_032017.1	116	Cgc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	49030394	49030394	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			37	242	275	0	ENST00000267163.4:c.1870del	p.Ser624LeufsTer19	p.S624Lfs*19	ENST00000267163	NM_000321.2	623	aaT/aa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151843698	151843698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	22	365	0	ENST00000262189.6:c.14017C>T	p.Arg4673Cys	p.R4673C	ENST00000262189	NM_170606.2	4673	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874661	151874662	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0045856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	278	384	0	ENST00000262189.6:c.7876_7877del	p.Glu2626ThrfsTer30	p.E2626Tfs*30	ENST00000262189	NM_170606.2	2626	GAa/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	215	723	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0046063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	114	631	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0046063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	114	631	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	76	360	0	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																																																														
RARA	5914	MSKCC	GRCh37	17	38510563	38510563	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	59	679	0	ENST00000254066.5:c.817A>C	p.Ile273Leu	p.I273L	ENST00000254066	NM_000964.3	273	Atc/Ctc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271277	153271277	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0046063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	30	196	1	ENST00000281708.4:c.502-1G>T		p.X168_splice	ENST00000281708	NM_033632.3	168																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087886	27087898	+	frameshift_variant	Frame_Shift_Del	DEL	CCACCTCGGCCAC	CCACCTCGGCCAC	ACG			P-0046063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	114	666	1	ENST00000324856.7:c.2173_2185delinsACG	p.Pro725ThrfsTer14	p.P725Tfs*14	ENST00000324856	NM_006015.4	725	CCACCTCGGCCACcc/ACGcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577591	7577591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	123	319	0	ENST00000269305.4:c.690del	p.Thr231ProfsTer16	p.T231Pfs*16	ENST00000269305	NM_001126112.2	230	acC/ac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287446	46287446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	50	193	1	ENST00000334344.6:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000334344	NM_152641.2	1769	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385239	41385239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	131	430	0	ENST00000373198.4:c.722G>A	p.Arg241His	p.R241H	ENST00000373198	NM_133170.3	241	cGt/cAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48939033	48939034	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	C			P-0046112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	28	90	0	ENST00000267163.4:c.865_866delinsC	p.Lys289GlnfsTer12	p.K289Qfs*12	ENST00000267163	NM_000321.2	289	AAa/Ca																																																																														
ATM	472	MSKCC	GRCh37	11	108203487	108203487	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0046177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			75	185	130	0	ENST00000278616.4:c.7789-2A>T		p.X2597_splice	ENST00000278616	NM_000051.3	2597																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	453	410	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	517	618	0	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT																																																																														
STK11	6794	MSKCC	GRCh37	19	1222992	1222992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	532	633	0	ENST00000326873.7:c.929G>T	p.Arg310Leu	p.R310L	ENST00000326873	NM_000455.4	310	cGg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944448	40944448	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			679	199	592	0	ENST00000373198.4:c.2054A>G	p.Lys685Arg	p.K685R	ENST00000373198	NM_133170.3	685	aAg/aGg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480428	89480428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	148	385	0	ENST00000336596.2:c.2265C>G	p.Asn755Lys	p.N755K	ENST00000336596	NM_005233.5	755	aaC/aaG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0046195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	336	813	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480122	50480122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	72	327	1	ENST00000394963.4:c.356G>A	p.Arg119Gln	p.R119Q	ENST00000394963	NM_003076.4	119	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107195	27107195	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	272	456	0	ENST00000324856.7:c.6806C>A	p.Ser2269Ter	p.S2269*	ENST00000324856	NM_006015.4	2269	tCa/tAa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563278	21563278	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	192	1062	1	ENST00000382592.4:c.641A>G	p.Tyr214Cys	p.Y214C	ENST00000382592	NM_014572.2	214	tAc/tGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624303	89624309	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGTAT	CCTGTAT	-			P-0046195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	22	525	0	ENST00000371953.3:c.79_79+6del		p.X27_splice	ENST00000371953	NM_000314.4	27																																																																															
NKX2-1	7080	MSKCC	GRCh37	14	36987222	36987222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	151	820	0	ENST00000354822.5:c.467C>G	p.Ser156Cys	p.S156C	ENST00000354822	NM_001079668.2	156	tCc/tGc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566248	95566248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	18	347	0	ENST00000343455.3:c.4075C>G	p.Leu1359Val	p.L1359V	ENST00000343455	NM_177438.2	1359	Ctt/Gtt																																																																														
RARA	5914	MSKCC	GRCh37	17	38511532	38511532	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	115	635	0	ENST00000254066.5:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000254066	NM_000964.3	344	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860343	151860343	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	30	403	0	ENST00000262189.6:c.10319A>C	p.Glu3440Ala	p.E3440A	ENST00000262189	NM_170606.2	3440	gAg/gCg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5022075	5022075	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	26	395	0	ENST00000381652.3:c.88A>C	p.Asn30His	p.N30H	ENST00000381652	NM_004972.3	30	Aat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0046198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	13	707	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0046199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	33	626	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0046199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	38	665	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50492776	50492776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	32	424	0	ENST00000394963.4:c.1541A>G	p.Asn514Ser	p.N514S	ENST00000394963	NM_003076.4	514	aAt/aGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0046200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	156	485	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627837	14627837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	341	658	0	ENST00000254322.2:c.233G>A	p.Ser78Asn	p.S78N	ENST00000254322	NM_006145.1	78	aGt/aAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	414	584	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012389	29012389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	32	370	0	ENST00000282397.4:c.482C>T	p.Thr161Met	p.T161M	ENST00000282397	NM_002019.4	161	aCg/aTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	310	439	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870882	12870882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	134	170	0	ENST00000228872.4:c.109G>A	p.Asp37Asn	p.D37N	ENST00000228872	NM_004064.3	37	Gac/Aac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916120	9916120	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	45	300	0	ENST00000330684.3:c.2168+1G>A		p.X723_splice	ENST00000330684	NM_001134407.1	723																																																																															
PTP4A1	7803	MSKCC	GRCh37	6	64289166	64289166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	25	251	0	ENST00000370651.3:c.334C>T	p.Pro112Ser	p.P112S	ENST00000370651	NM_003463.4	112	Cca/Tca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	509	275	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	638	739	2	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	671	820	0	ENST00000171111.5:c.1085G>C	p.Arg362Pro	p.R362P	ENST00000171111	NM_203500.1	362	cGg/cCg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	202	370	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40481581	40481581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	960	459	0	ENST00000264657.5:c.1224C>G	p.Phe408Leu	p.F408L	ENST00000264657	NM_139276.2	408	ttC/ttG																																																																														
STK11	6794	MSKCC	GRCh37	19	1220415	1220415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	771	720	0	ENST00000326873.7:c.508C>T	p.Gln170Ter	p.Q170*	ENST00000326873	NM_000455.4	170	Cag/Tag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87563465	87563465	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs202136187		P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	298	500	0	ENST00000277120.3:c.1853A>G	p.Lys618Arg	p.K618R	ENST00000277120		618	aAg/aGg																																																																														
ATRX	546	MSKCC	GRCh37	X	76812962	76812962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	450	169	1	ENST00000373344.5:c.6659C>T	p.Ser2220Leu	p.S2220L	ENST00000373344	NM_000489.3	2220	tCa/tTa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156693	20156693	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	143	192	0	ENST00000379607.5:c.64G>C	p.Glu22Gln	p.E22Q	ENST00000379607	NM_001412.3	22	Gaa/Caa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876425	35876425	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	389	586	0	ENST00000303115.3:c.1217T>G	p.Leu406Arg	p.L406R	ENST00000303115	NM_002185.3	406	cTt/cGt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858336	9858336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	507	365	1	ENST00000330684.3:c.3065G>A	p.Arg1022His	p.R1022H	ENST00000330684	NM_001134407.1	1022	cGc/cAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523600	106523600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	506	203	0	ENST00000359195.3:c.2752G>A	p.Glu918Lys	p.E918K	ENST00000359195	NM_002649.2	918	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953016	2953016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	324	718	0	ENST00000396946.4:c.2924G>T	p.Arg975Leu	p.R975L	ENST00000396946	NM_032415.4	975	cGg/cTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045491	47045491	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	650	276	0	ENST00000329236.7:c.2224G>T	p.Glu742Ter	p.E742*	ENST00000329236	NM_001204466.1	742	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629391	187629391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	373	564	1	ENST00000441802.2:c.1591C>T	p.Pro531Ser	p.P531S	ENST00000441802	NM_005245.3	531	Cct/Tct																																																																														
TET1	80312	MSKCC	GRCh37	10	70442602	70442602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	454	350	0	ENST00000373644.4:c.4924G>C	p.Glu1642Gln	p.E1642Q	ENST00000373644	NM_030625.2	1642	Gaa/Caa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725089	89725089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	90	82	0	ENST00000371953.3:c.1072G>A	p.Glu358Lys	p.E358K	ENST00000371953	NM_000314.4	358	Gag/Aag																																																																														
PGR	5241	MSKCC	GRCh37	11	100996845	100996845	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	1053	411	0	ENST00000325455.5:c.1682C>A	p.Ser561Ter	p.S561*	ENST00000325455	NM_001202474.3	561	tCa/tAa																																																																														
ATM	472	MSKCC	GRCh37	11	108117762	108117762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	366	184	0	ENST00000278616.4:c.973C>T	p.His325Tyr	p.H325Y	ENST00000278616	NM_000051.3	325	Cat/Tat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544088	18544088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	259	209	0	ENST00000266497.5:c.1905G>C	p.Met635Ile	p.M635I	ENST00000266497		635	atG/atC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445505	49445505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1529	386	603	0	ENST00000301067.7:c.1961C>T	p.Ser654Phe	p.S654F	ENST00000301067	NM_003482.3	654	tCc/tTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95596463	95596463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	116	242	0	ENST00000343455.3:c.505A>G	p.Ile169Val	p.I169V	ENST00000343455	NM_177438.2	169	Att/Gtt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032002	10032002	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	397	580	0	ENST00000330684.3:c.821C>G	p.Ser274Trp	p.S274W	ENST00000330684	NM_001134407.1	274	tCg/tGg																																																																														
RARA	5914	MSKCC	GRCh37	17	38512384	38512384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	212	434	3	ENST00000254066.5:c.1295G>A	p.Arg432Gln	p.R432Q	ENST00000254066	NM_000964.3	432	cGg/cAg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017155	31017155	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	105	219	0	ENST00000375687.4:c.486G>C	p.Lys162Asn	p.K162N	ENST00000375687	NM_015338.5	162	aaG/aaC																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180244	38180244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	1116	680	0	ENST00000396334.3:c.92C>G	p.Ser31Cys	p.S31C	ENST00000396334	NM_002468.4	31	tCc/tGc																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180445	38180445	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	1281	620	0	ENST00000396334.3:c.293C>G	p.Ser98Cys	p.S98C	ENST00000396334	NM_002468.4	98	tCt/tGt																																																																														
TET2	54790	MSKCC	GRCh37	4	106155979	106155979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	338	244	1	ENST00000380013.4:c.880G>A	p.Glu294Lys	p.E294K	ENST00000380013	NM_001127208.2	294	Gag/Aag																																																																														
TET2	54790	MSKCC	GRCh37	4	106162579	106162579	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	149	182	0	ENST00000380013.4:c.3493G>T	p.Glu1165Ter	p.E1165*	ENST00000380013	NM_001127208.2	1165	Gaa/Taa																																																																														
TET2	54790	MSKCC	GRCh37	4	106196946	106196946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	131	166	0	ENST00000380013.4:c.5279C>T	p.Ser1760Phe	p.S1760F	ENST00000380013	NM_001127208.2	1760	tCt/tTt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159120	143159120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	99	274	0	ENST00000262992.4:c.733G>A	p.Asp245Asn	p.D245N	ENST00000262992	NM_001101669.1	245	Gac/Aac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176719030	176719030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	158	242	0	ENST00000439151.2:c.6334G>A	p.Glu2112Lys	p.E2112K	ENST00000439151	NM_022455.4	2112	Gaa/Aaa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032008	26032008	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	354	375	0	ENST00000244661.2:c.281A>C	p.Gln94Pro	p.Q94P	ENST00000244661	NM_003537.3	94	cAg/cCg																																																																														
HGF	3082	MSKCC	GRCh37	7	81392114	81392114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	326	214	0	ENST00000222390.5:c.163C>G	p.Pro55Ala	p.P55A	ENST00000222390	NM_000601.4	55	Cca/Gca																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156740	20156740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0046202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	103	127	0	ENST00000379607.5:c.17G>C	p.Gly6Ala	p.G6A	ENST00000379607	NM_001412.3	6	gGt/gCt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	321	429	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652147	36652148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	233	720	0	ENST00000244741.5:c.270dup	p.Gly91ArgfsTer38	p.G91Rfs*38	ENST00000244741	NM_000389.4	90	gga/ggAa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29107942	29107942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	223	529	0	ENST00000328354.6:c.747G>T	p.Lys249Asn	p.K249N	ENST00000328354	NM_007194.3	249	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	250	622	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	142	354	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg																																																																														
RB1	5925	MSKCC	GRCh37	13	48919336	48919336	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	37	154	0	ENST00000267163.4:c.500+1G>A		p.X167_splice	ENST00000267163	NM_000321.2	167																																																																															
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	130	639	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0046214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1305	208	824	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791527	42791527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	61	687	1	ENST00000575354.2:c.508C>T	p.Arg170Trp	p.R170W	ENST00000575354	NM_015125.3	170	Cgg/Tgg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368424	225368424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	66	306	0	ENST00000264414.4:c.1322T>C	p.Leu441Pro	p.L441P	ENST00000264414	NM_003590.4	441	cTc/cCc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247384	153247384	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	50	167	0	ENST00000281708.4:c.1419-1G>A		p.X473_splice	ENST00000281708	NM_033632.3	473																																																																															
TERT	7015	MSKCC	GRCh37	5	1293592	1293592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	24	843	0	ENST00000310581.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000310581	NM_198253.2	470	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	46	680	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5044464	5044464	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	22	445	1	ENST00000381652.3:c.412C>T	p.Arg138Ter	p.R138*	ENST00000381652	NM_004972.3	138	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224198	36224198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	136	607	0	ENST00000222270.7:c.6748C>T	p.Arg2250Cys	p.R2250C	ENST00000222270	NM_014727.1	2250	Cgc/Tgc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78426120	78426120	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	40	491	1	ENST00000370768.2:c.1405del	p.His469MetfsTer196	p.H469Mfs*196	ENST00000370768	NM_003902.3	469	Cat/at																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518439	204518439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	14	374	0	ENST00000367182.3:c.1102G>T	p.Ala368Ser	p.A368S	ENST00000367182	NM_001278516.1	368	Gct/Tct																																																																														
TET1	80312	MSKCC	GRCh37	10	70432693	70432693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	16	391	0	ENST00000373644.4:c.4715G>T	p.Gly1572Val	p.G1572V	ENST00000373644	NM_030625.2	1572	gGa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425773	49425773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	46	757	0	ENST00000301067.7:c.12715C>T	p.Gln4239Ter	p.Q4239*	ENST00000301067	NM_003482.3	4239	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438279	49438279	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	61	640	0	ENST00000301067.7:c.4990del	p.Ile1664LeufsTer58	p.I1664Lfs*58	ENST00000301067	NM_003482.3	1664	Att/tt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288487	15288487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	17	219	0	ENST00000263388.2:c.4252T>C	p.Ser1418Pro	p.S1418P	ENST00000263388	NM_000435.2	1418	Tcg/Ccg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665553	138665553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	40	311	0	ENST00000330315.3:c.12C>A	p.Ser4Arg	p.S4R	ENST00000330315	NM_023067.3	4	agC/agA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630068	187630068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	35	592	0	ENST00000441802.2:c.914C>A	p.Thr305Lys	p.T305K	ENST00000441802	NM_005245.3	305	aCa/aAa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396929	139396929	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	34	337	0	ENST00000277541.6:c.5179G>T	p.Glu1727Ter	p.E1727*	ENST00000277541	NM_017617.3	1727	Gag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554978	187554979	+	splice_acceptor_variant	Splice_Site	DEL	CT	CT	A			P-0046217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	18	295	0	ENST00000441802.2:c.4184-2_4184-1delinsT		p.X1395_splice	ENST00000441802	NM_005245.3	1395																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	88	744	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
RB1	5925	MSKCC	GRCh37	13	49037866	49037866	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	42	135	0	ENST00000267163.4:c.2107-1G>C		p.X703_splice	ENST00000267163	NM_000321.2	703																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934105	39934105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	35	267	0	ENST00000378444.4:c.494C>T	p.Ala165Val	p.A165V	ENST00000378444	NM_001123385.1	165	gCg/gTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866609	37866609	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	74	608	0	ENST00000269571.5:c.776A>G	p.Asn259Ser	p.N259S	ENST00000269571		259	aAc/aGc																																																																														
STK11	6794	MSKCC	GRCh37	19	1218414	1218414	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	64	487	1	ENST00000326873.7:c.291-2A>T		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																															
RECQL	5965	MSKCC	GRCh37	12	21627910	21627910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	29	336	0	ENST00000421138.2:c.1220G>A	p.Arg407Gln	p.R407Q	ENST00000421138		407	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859627	151859627	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	13	411	0	ENST00000262189.6:c.11035G>T	p.Glu3679Ter	p.E3679*	ENST00000262189	NM_170606.2	3679	Gaa/Taa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264425	16264425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	36	679	1	ENST00000375759.3:c.10628G>T	p.Gly3543Val	p.G3543V	ENST00000375759	NM_015001.2	3543	gGa/gTa																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39325150	39325150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	62	555	0	ENST00000373001.3:c.169G>T	p.Ala57Ser	p.A57S	ENST00000373001	NM_022157.3	57	Gct/Tct																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258030	123258030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	13	442	0	ENST00000358487.5:c.1651C>T	p.Leu551Phe	p.L551F	ENST00000358487	NM_000141.4	551	Ctt/Ttt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230547	46230548	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	35	349	0	ENST00000334344.6:c.799dup	p.Glu267GlyfsTer13	p.E267Gfs*13	ENST00000334344	NM_152641.2	266	tgg/tGgg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748855	43748856	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	94	630	0	ENST00000382044.4:c.1950_1951delinsAT	p.Glu651Ter	p.E651*	ENST00000382044	NM_001141980.1	650	gaGGaa/gaATaa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498525	89498526	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	50	227	0	ENST00000336596.2:c.2496+2dup		p.X832_splice	ENST00000336596	NM_005233.5	832																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430957	181430961	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGG	TCCGG	-			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	50	737	0	ENST00000325404.1:c.809_813del	p.Leu270ArgfsTer38	p.L270Rfs*38	ENST00000325404	NM_003106.3	270	cTCCGG/c																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590496	67590496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	31	167	0	ENST00000274335.5:c.1558G>C	p.Glu520Gln	p.E520Q	ENST00000274335		520	Gaa/Caa																																																																														
PARK2	0	MSKCC	GRCh37	6	161970008	161970008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	14	630	0	ENST00000366898.1:c.961G>A	p.Glu321Lys	p.E321K	ENST00000366898	NM_004562.2	321	Gag/Aag																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250103	110250103	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	70	681	0	ENST00000374672.4:c.572A>G	p.Asn191Ser	p.N191S	ENST00000374672	NM_004235.4	191	aAc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	58	389	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
INHA	3623	MSKCC	GRCh37	2	220437227	220437227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	79	887	1	ENST00000243786.2:c.131C>A	p.Pro44His	p.P44H	ENST00000243786	NM_002191.3	44	cCc/cAc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741539	17741539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	50	359	0	ENST00000250003.3:c.210C>A	p.His70Gln	p.H70Q	ENST00000250003	NM_002478.4	70	caC/caA																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112919968	112919968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	55	516	0	ENST00000351677.2:c.1183G>T	p.Asp395Tyr	p.D395Y	ENST00000351677	NM_002834.3	395	Gac/Tac																																																																														
POLE	5426	MSKCC	GRCh37	12	133201382	133201382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	76	711	0	ENST00000320574.5:c.6762G>T	p.Gln2254His	p.Q2254H	ENST00000320574	NM_006231.2	2254	caG/caT																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103510680	103510680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	30	294	2	ENST00000355739.4:c.584G>T	p.Ser195Ile	p.S195I	ENST00000355739	NM_000123.3	195	aGc/aTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29588745	29588745	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	42	253	0	ENST00000358273.4:c.4595del	p.Gly1532GlufsTer42	p.G1532Efs*42	ENST00000358273	NM_001042492.2	1532	Gga/ga																																																																														
NF1	4763	MSKCC	GRCh37	17	29679433	29679433	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	55	297	0	ENST00000358273.4:c.7615+1G>T		p.X2539_splice	ENST00000358273	NM_001042492.2	2539																																																																															
CUL3	8452	MSKCC	GRCh37	2	225379489	225379489	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	28	302	0	ENST00000264414.4:c.379G>T	p.Asp127Tyr	p.D127Y	ENST00000264414	NM_003590.4	127	Gac/Tac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385147	41385147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	68	768	0	ENST00000373198.4:c.814G>A	p.Asp272Asn	p.D272N	ENST00000373198	NM_133170.3	272	Gat/Aat																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225692	26225692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	148	671	0	ENST00000360408.1:c.310C>A	p.Leu104Ile	p.L104I	ENST00000360408	NM_003532.2	104	Ctt/Att																																																																														
MET	4233	MSKCC	GRCh37	7	116339203	116339203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	68	331	1	ENST00000397752.3:c.65G>T	p.Ser22Ile	p.S22I	ENST00000397752	NM_000245.2	22	aGc/aTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465477	8465477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	18	339	0	ENST00000356435.5:c.3703C>T	p.His1235Tyr	p.H1235Y	ENST00000356435		1235	Cat/Tat																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98218611	98218611	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	90	498	1	ENST00000331920.6:c.3253A>T	p.Ile1085Phe	p.I1085F	ENST00000331920	NM_000264.3	1085	Atc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	184	183	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	215	671	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114920398	114920398	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	212	390	0	ENST00000543371.1:c.1339T>G	p.Cys447Gly	p.C447G	ENST00000543371	NM_001198531.1	447	Tgt/Ggt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	118	603	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443599	52443601	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0046222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	107	523	0	ENST00000460680.1:c.91_93del	p.Glu31del	p.E31del	ENST00000460680	NM_004656.3	31	GAG/-																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864309	57864309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	109	629	0	ENST00000228682.2:c.1786G>A	p.Ala596Thr	p.A596T	ENST00000228682	NM_005269.2	596	Gcc/Acc																																																																														
VHL	7428	MSKCC	GRCh37	3	10183863	10183864	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTA			P-0046222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	91	527	0	ENST00000256474.2:c.334_336dup	p.Tyr112dup	p.Y112dup	ENST00000256474	NM_000551.3	112	agc/agCTAc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184159	123184159	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0046222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	48	253	0	ENST00000218089.9:c.1017+1del		p.K339fs	ENST00000218089	NM_001042749.1	339	aaG/aa																																																																														
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	12	151	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	60	720	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786758	3786758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	32	520	0	ENST00000262367.5:c.4453C>T	p.His1485Tyr	p.H1485Y	ENST00000262367	NM_004380.2	1485	Cat/Tat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412006	63412006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	20	745	0	ENST00000330258.3:c.1161G>C	p.Glu387Asp	p.E387D	ENST00000330258	NM_152424.3	387	gaG/gaC																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	48	234	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027494	48027494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	56	255	0	ENST00000234420.5:c.2372G>A	p.Arg791His	p.R791H	ENST00000234420	NM_000179.2	791	cGt/cAt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	91	385	2	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	30	350	2	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	65	287	0	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																														
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	25	148	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
CBFB	865	MSKCC	GRCh37	16	67063358	67063359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	75	274	0	ENST00000412916.2:c.54dupT	p.Arg19Ter	p.R19*	ENST00000412916		16	-/T																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495415	56495415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	123	606	0	ENST00000267101.3:c.3605G>A	p.Arg1202Gln	p.R1202Q	ENST00000267101	NM_001982.3	1202	cGg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	80	380	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	78	200	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	33	333	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	76	340	0	ENST00000359013.4:c.1657C>A	p.Arg553Ser	p.R553S	ENST00000359013	NM_001024847.2	553	Cgt/Agt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	122	519	2	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788618	3788618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	76	317	0	ENST00000262367.5:c.4336C>A	p.Arg1446Ser	p.R1446S	ENST00000262367	NM_004380.2	1446	Cgc/Agc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119794	70119794	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	121	586	0	ENST00000245479.2:c.800del	p.Pro267LeufsTer12	p.P267Lfs*12	ENST00000245479	NM_000346.3	266	Ccc/cc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	132	730	1	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273944	10273944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	167	782	0	ENST00000330684.3:c.325G>A	p.Val109Ile	p.V109I	ENST00000330684	NM_001134407.1	109	Gta/Ata																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	103	350	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	209	764	13	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	49	511	0	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	123	508	5	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323315	31323315	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	83	420	0	ENST00000412585.2:c.674T>G	p.Leu225Arg	p.L225R	ENST00000412585	NM_005514.6	225	cTg/cGg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663295	227663295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	40	478	3	ENST00000305123.5:c.160C>T	p.Arg54Trp	p.R54W	ENST00000305123	NM_005544.2	54	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216188	36216188	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	52	617	1	ENST00000222270.7:c.3596G>C	p.Gly1199Ala	p.G1199A	ENST00000222270	NM_014727.1	1199	gGc/gCc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258894	16258894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	47	543	3	ENST00000375759.3:c.6164delC	p.Pro2055LeufsTer9	p.P2055Lfs*9	ENST00000375759	NM_015001.2	2053	aaC/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295278	1295278	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	111	455	2				ENST00000310581	NM_198253.2																																																																																
TSC2	7249	MSKCC	GRCh37	16	2136269	2136269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	147	666	0	ENST00000219476.3:c.4738C>T	p.Arg1580Trp	p.R1580W	ENST00000219476	NM_000548.3	1580	Cgg/Tgg																																																																														
LMO1	4004	MSKCC	GRCh37	11	8252034	8252034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	106	559	0	ENST00000335790.3:c.43G>A	p.Val15Ile	p.V15I	ENST00000335790	NM_002315.2	15	Gtc/Atc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58677990	58677990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	56	213	0	ENST00000305921.3:c.215C>T	p.Ala72Val	p.A72V	ENST00000305921	NM_003620.3	72	gCc/gTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76939697	76939697	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	71	409	0	ENST00000373344.5:c.1051G>T	p.Glu351Ter	p.E351*	ENST00000373344	NM_000489.3	351	Gag/Tag																																																																														
STK40	83931	MSKCC	GRCh37	1	36807448	36807448	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	55	645	0	ENST00000373129.3:c.1216A>G	p.Ser406Gly	p.S406G	ENST00000373129	NM_032017.1	406	Agc/Ggc																																																																														
JUN	3725	MSKCC	GRCh37	1	59248325	59248325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	24	183	0	ENST00000371222.2:c.418G>A	p.Ala140Thr	p.A140T	ENST00000371222	NM_002228.3	140	Gca/Aca																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138107	64138107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	41	658	0	ENST00000334205.4:c.2030G>A	p.Gly677Asp	p.G677D	ENST00000334205	NM_003942.2	677	gGc/gAc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577292	64577292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	125	668	0	ENST00000337652.1:c.290T>C	p.Ile97Thr	p.I97T	ENST00000337652	NM_130803.2	97	aTc/aCc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941409	71941409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	117	634	0	ENST00000298229.2:c.1094G>A	p.Arg365His	p.R365H	ENST00000298229	NM_001567.3	365	cGc/cAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377187	118377187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	94	337	0	ENST00000534358.1:c.10580G>A	p.Arg3527Gln	p.R3527Q	ENST00000534358	NM_005933.3	3527	cGg/cAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392843	118392843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	37	379	1	ENST00000534358.1:c.11875C>T	p.Pro3959Ser	p.P3959S	ENST00000534358	NM_005933.3	3959	Ccc/Tcc																																																																														
RB1	5925	MSKCC	GRCh37	13	48955558	48955558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	14	164	0	ENST00000267163.4:c.1674G>A	p.Met558Ile	p.M558I	ENST00000267163	NM_000321.2	558	atG/atA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828234	72828234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	115	546	0	ENST00000268489.5:c.8347G>A	p.Val2783Ile	p.V2783I	ENST00000268489	NM_006885.3	2783	Gtc/Atc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214668	5214668	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	120	714	0	ENST00000357368.4:c.4398del	p.Pro1467ArgfsTer23	p.P1467Rfs*23	ENST00000357368	NM_002850.3	1466	ggG/gg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36215543	36215543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	59	630	0	ENST00000222270.7:c.3340C>A	p.Pro1114Thr	p.P1114T	ENST00000222270	NM_014727.1	1114	Cca/Aca																																																																														
CASP8	841	MSKCC	GRCh37	2	202137387	202137387	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	55	231	0	ENST00000358485.4:c.616del	p.Glu206ArgfsTer14	p.E206Rfs*14	ENST00000358485	NM_001080125.1	205	atG/at																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62305301	62305301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	57	747	0	ENST00000508582.2:c.846G>A	p.Met282Ile	p.M282I	ENST00000508582		282	atG/atA																																																																														
EP300	2033	MSKCC	GRCh37	22	41574852	41574852	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	114	511	0	ENST00000263253.7:c.7137T>A	p.Asn2379Lys	p.N2379K	ENST00000263253	NM_001429.3	2379	aaT/aaA																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626352	12626352	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	69	440	0	ENST00000251849.4:c.1797delT	p.Gln601ArgfsTer39	p.Q601Rfs*39	ENST00000251849	NM_002880.3	599	ttT/tt																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799655	72799655	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	108	518	0	ENST00000325599.8:c.1514T>C	p.Val505Ala	p.V505A	ENST00000325599	NM_018130.2	505	gTt/gCt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946360	2946360	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	64	769	0	ENST00000396946.4:c.3377del	p.Gly1126AlafsTer3	p.G1126Afs*3	ENST00000396946	NM_032415.4	1126	gGc/gc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739593	41739593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	22	303	0	ENST00000242208.4:c.380C>T	p.Ala127Val	p.A127V	ENST00000242208	NM_002192.2	127	gCc/gTc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5089816	5089816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	20	212	0	ENST00000381652.3:c.2714T>C	p.Leu905Pro	p.L905P	ENST00000381652	NM_004972.3	905	cTa/cCa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411771	63411772	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	154	713	0	ENST00000330258.3:c.1395dup	p.Asn466GlnfsTer2	p.N466Qfs*2	ENST00000330258	NM_152424.3	465	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	79	606	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	80	451	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	86	628	0	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044723	47044723	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	110	410	0	ENST00000329236.7:c.1889del	p.His630ProfsTer94	p.H630Pfs*94	ENST00000329236	NM_001204466.1	630	cAc/cc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	208	293	0	ENST00000288135.5:c.1676T>C	p.Val559Ala	p.V559A	ENST00000288135	NM_000222.2	559	gTt/gCt																																																																														
ATM	472	MSKCC	GRCh37	11	108172433	108172433	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	195	281	0	ENST00000278616.4:c.5236G>T	p.Gly1746Ter	p.G1746*	ENST00000278616	NM_000051.3	1746	Gga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112151282	112151282	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	27	230	3	ENST00000257430.4:c.925G>T	p.Gly309Ter	p.G309*	ENST00000257430	NM_000038.5	309	Gga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	301	282	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	144	433	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	967	628	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681030	37681030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	277	372	0	ENST00000447079.4:c.3199C>T	p.Arg1067Ter	p.R1067*	ENST00000447079	NM_015083.1	1067	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118365476	118365476	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	289	160	0	ENST00000534358.1:c.5357C>G	p.Ser1786Ter	p.S1786*	ENST00000534358	NM_005933.3	1786	tCa/tGa																																																																														
RB1	5925	MSKCC	GRCh37	13	49039427	49039427	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	408	414	0	ENST00000267163.4:c.2412del	p.Tyr805IlefsTer5	p.Y805Ifs*5	ENST00000267163	NM_000321.2	804	atC/at																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281987	49281987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	425	391	0	ENST00000282018.3:c.1034G>C	p.Arg345Thr	p.R345T	ENST00000282018	NM_020377.2	345	aGa/aCa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822208	72822208	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	521	619	0	ENST00000268489.5:c.9967A>C	p.Ile3323Leu	p.I3323L	ENST00000268489	NM_006885.3	3323	Atc/Ctc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794653	42794653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	407	742	0	ENST00000575354.2:c.1733C>T	p.Ala578Val	p.A578V	ENST00000575354	NM_015125.3	578	gCt/gTt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741724	145741724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1515	127	766	0	ENST00000428558.2:c.779A>G	p.Glu260Gly	p.E260G	ENST00000428558	NM_004260.3	260	gAg/gGg																																																																														
VHL	7428	MSKCC	GRCh37	3	10183797	10183797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	132	658	0	ENST00000256474.2:c.266T>A	p.Leu89His	p.L89H	ENST00000256474	NM_000551.3	89	cTc/cAc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38631984	38631984	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	67	453	3	ENST00000299084.4:c.470T>C	p.Phe157Ser	p.F157S	ENST00000299084	NM_152594.2	157	tTt/tCt																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42839745	42839751	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCTT	CCAGCTT	-			P-0046235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	146	529	0	ENST00000398585.3:c.1488_1494del	p.Ser497ValfsTer16	p.S497Vfs*16	ENST00000398585	NM_001135099.1	496	acAAGCTGG/ac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164929	47164930	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0046235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	36	211	0	ENST00000409792.3:c.1196_1197del	p.Glu399AlafsTer9	p.E399Afs*9	ENST00000409792	NM_014159.6	399	gAG/g																																																																														
MET	4233	MSKCC	GRCh37	7	116398628	116398628	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	37	321	0	ENST00000397752.3:c.2218G>T	p.Glu740Ter	p.E740*	ENST00000397752	NM_000245.2	740	Gaa/Taa																																																																														
RHEB	6009	MSKCC	GRCh37	7	151174422	151174422	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	89	254	0	ENST00000262187.5:c.272A>C	p.Lys91Thr	p.K91T	ENST00000262187	NM_005614.3	91	aAa/aCa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	522	472	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641144	117641144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	257	526	0	ENST00000368508.3:c.5827G>A	p.Glu1943Lys	p.E1943K	ENST00000368508	NM_002944.2	1943	Gaa/Aaa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99442819	99442819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	321	472	0	ENST00000268035.6:c.1216C>T	p.Arg406Cys	p.R406C	ENST00000268035	NM_000875.3	406	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971149	21971149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	292	402	0	ENST00000304494.5:c.209C>T	p.Pro70Leu	p.P70L	ENST00000304494	NM_000077.4	70	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971149	21971149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	292	402	0	ENST00000304494.5:c.209C>T	p.Pro70Leu	p.P70L	ENST00000304494	NM_000077.4	70	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	143	402	0	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271638	15271639	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	402	867	1	ENST00000263388.2:c.6800_6801delinsTT	p.Ser2267Phe	p.S2267F	ENST00000263388	NM_000435.2	2267	tCC/tTT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	124	394	2				ENST00000310581	NM_198253.2																																																																																
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1326	334	792	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857368	9857368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	139	442	0	ENST00000330684.3:c.4033C>T	p.Pro1345Ser	p.P1345S	ENST00000330684	NM_001134407.1	1345	Ccc/Tcc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528051	157528051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	275	423	0	ENST00000346085.5:c.5776C>T	p.Arg1926Ter	p.R1926*	ENST00000346085	NM_020732.3	1926	Cga/Tga																																																																														
PAX5	5079	MSKCC	GRCh37	9	37002653	37002653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	105	529	0	ENST00000358127.4:c.596G>A	p.Arg199Lys	p.R199K	ENST00000358127	NM_001280556.1	199	aGa/aAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069613	69069613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	120	302	0	ENST00000288368.4:c.4288C>T	p.Gln1430Ter	p.Q1430*	ENST00000288368	NM_024870.2	1430	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088709	27088709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	204	600	0	ENST00000324856.7:c.2318C>T	p.Pro773Leu	p.P773L	ENST00000324856	NM_006015.4	773	cCg/cTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057098	180057098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	141	624	1	ENST00000261937.6:c.521C>T	p.Ser174Leu	p.S174L	ENST00000261937	NM_182925.4	174	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145758	11145758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	89	660	0	ENST00000344626.4:c.4120C>T	p.Arg1374Cys	p.R1374C	ENST00000344626	NM_003072.3	1374	Cgc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258491	16258491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	64	490	0	ENST00000375759.3:c.5756C>T	p.Pro1919Leu	p.P1919L	ENST00000375759	NM_015001.2	1919	cCt/cTt																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39305347	39305348	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	230	438	0	ENST00000373001.3:c.1077_1078delinsTT	p.Arg360Ter	p.R360*	ENST00000373001	NM_022157.3	359	ttCCga/ttTTga																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430776	78430776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	244	432	0	ENST00000370768.2:c.613G>A	p.Gly205Arg	p.G205R	ENST00000370768	NM_003902.3	205	Gga/Aga																																																																														
RET	5979	MSKCC	GRCh37	10	43615027	43615027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	89	631	1	ENST00000355710.3:c.2441G>A	p.Gly814Asp	p.G814D	ENST00000355710	NM_020975.4	814	gGc/gAc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332450	70332450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	25	522	0	ENST00000373644.4:c.355C>T	p.Pro119Ser	p.P119S	ENST00000373644	NM_030625.2	119	Cca/Tca																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263961	104263961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	14	217	0	ENST00000369902.3:c.52C>T	p.Pro18Ser	p.P18S	ENST00000369902	NM_016169.3	18	Cct/Tct																																																																														
PGR	5241	MSKCC	GRCh37	11	100912830	100912830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	28	282	0	ENST00000325455.5:c.2492C>T	p.Pro831Leu	p.P831L	ENST00000325455	NM_001202474.3	831	cCt/cTt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120714	115120714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	207	660	0	ENST00000257566.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000257566	NM_016569.3	98	Gag/Aag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28891725	28891725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	29	463	1	ENST00000282397.4:c.3296C>T	p.Pro1099Leu	p.P1099L	ENST00000282397	NM_002019.4	1099	cCa/cTa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119810	17119810	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	29	580	0	ENST00000285071.4:c.1184T>C	p.Leu395Pro	p.L395P	ENST00000285071	NM_144997.5	395	cTt/cCt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627943	37627943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	304	465	0	ENST00000447079.4:c.1858C>T	p.Pro620Ser	p.P620S	ENST00000447079	NM_015083.1	620	Cca/Tca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223526	36223526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	84	849	0	ENST00000222270.7:c.6076G>A	p.Glu2026Lys	p.E2026K	ENST00000222270	NM_014727.1	2026	Gag/Aag																																																																														
BBC3	27113	MSKCC	GRCh37	19	47731547	47731547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	45	21	0	ENST00000449228.1:c.245C>T	p.Pro82Leu	p.P82L	ENST00000449228	NM_001127240.2	82	cCc/cTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576863	212576863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	135	320	0	ENST00000342788.4:c.1036C>T	p.Gln346Ter	p.Q346*	ENST00000342788	NM_005235.2	346	Cag/Tag																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281779	46281780	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	88	553	0	ENST00000371998.3:c.4226_4227delinsTT	p.Pro1409Leu	p.P1409L	ENST00000371998		1409	cCC/cTT																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651527	52651527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	114	380	0	ENST00000394830.3:c.1569G>A	p.Met523Ile	p.M523I	ENST00000394830	NM_018313.4	523	atG/atA																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670630	134670630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	28	641	0	ENST00000398015.3:c.541G>A	p.Gly181Arg	p.G181R	ENST00000398015	NM_004441.4	181	Gga/Aga																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683483	182683483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	213	288	0	ENST00000292782.4:c.62C>T	p.Ser21Phe	p.S21F	ENST00000292782	NM_020640.2	21	tCt/tTt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806126	1806126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	333	681	0	ENST00000260795.2:c.1145G>A	p.Gly382Asp	p.G382D	ENST00000260795		382	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1293482	1293482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	207	712	0	ENST00000310581.5:c.1519G>A	p.Glu507Lys	p.E507K	ENST00000310581	NM_198253.2	507	Gag/Aag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519492	176519492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	336	701	0	ENST00000292408.4:c.898C>T	p.Pro300Ser	p.P300S	ENST00000292408	NM_213647.1	300	Ccc/Tcc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056640	26056640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	81	148	0	ENST00000343677.2:c.17C>T	p.Pro6Leu	p.P6L	ENST00000343677	NM_005319.3	6	cCt/cTt																																																																														
PIM1	5292	MSKCC	GRCh37	6	37138761	37138761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	221	506	0	ENST00000373509.5:c.194C>T	p.Ala65Val	p.A65V	ENST00000373509	NM_002648.3	65	gCc/gTc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455143	50455143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	23	249	0	ENST00000331340.3:c.690G>A	p.Met230Ile	p.M230I	ENST00000331340	NM_006060.4	230	atG/atA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031702	69031702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	138	398	0	ENST00000288368.4:c.3457G>A	p.Asp1153Asn	p.D1153N	ENST00000288368	NM_024870.2	1153	Gat/Aat																																																																														
SYK	6850	MSKCC	GRCh37	9	93607852	93607852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	126	324	1	ENST00000375746.1:c.554G>A	p.Gly185Glu	p.G185E	ENST00000375746	NM_001174167.1	185	gGa/gAa																																																																														
ABL1	25	MSKCC	GRCh37	9	133760126	133760126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	76	632	0	ENST00000318560.5:c.2449C>T	p.Pro817Ser	p.P817S	ENST00000318560	NM_005157.4	817	Ccc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0046240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	83	311	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	167	614	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971198	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0046240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	95	358	0	ENST00000304494.5:c.160_162delATG	p.Met54del	p.M54del	ENST00000304494	NM_000077.4	54	ATG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971198	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0046240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	95	358	0	ENST00000304494.5:c.160_162delATG	p.Met54del	p.M54del	ENST00000304494	NM_000077.4	54	ATG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971198	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0046240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	95	358	0	ENST00000304494.5:c.160_162delATG	p.Met54del	p.M54del	ENST00000304494	NM_000077.4	54	ATG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	178	675	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	75	316	1	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	78	275	1	ENST00000257430.4:c.4497delA	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245380	153245380	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	267	409	5	ENST00000281708.4:c.1811A>C	p.Lys604Thr	p.K604T	ENST00000281708	NM_033632.3	604	aAa/aCa																																																																														
APC	324	MSKCC	GRCh37	5	112173912	112173912	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	86	300	1	ENST00000257430.4:c.2621C>A	p.Ser874Ter	p.S874*	ENST00000257430	NM_000038.5	874	tCa/tAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828694	72828694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	66	664	1	ENST00000268489.5:c.7887C>A	p.Asn2629Lys	p.N2629K	ENST00000268489	NM_006885.3	2629	aaC/aaA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390150	89390150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	45	315	0	ENST00000336596.2:c.899G>T	p.Gly300Val	p.G300V	ENST00000336596	NM_005233.5	300	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112102108	112102108	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	52	122	1	ENST00000257430.4:c.220+1G>T		p.X74_splice	ENST00000257430	NM_000038.5	74																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	584	824	0	ENST00000269305.4:c.298del	p.Gln100ArgfsTer23	p.Q100Rfs*23	ENST00000269305	NM_001126112.2	100	Cag/ag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27058004	27058004	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	405	601	0	ENST00000324856.7:c.1712C>A	p.Ser571Ter	p.S571*	ENST00000324856	NM_006015.4	571	tCg/tAg																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612790	228612790	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	522	796	0	ENST00000366696.1:c.237T>A	p.Phe79Leu	p.F79L	ENST00000366696	NM_003493.2	79	ttT/ttA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437988	49437988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	259	690	1	ENST00000301067.7:c.5183A>G	p.Asp1728Gly	p.D1728G	ENST00000301067	NM_003482.3	1728	gAc/gGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991861	72991861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	231	626	1	ENST00000268489.5:c.2184C>G	p.Cys728Trp	p.C728W	ENST00000268489	NM_006885.3	728	tgC/tgG																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78599536	78599536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	184	562	0	ENST00000306801.3:c.208G>A	p.Val70Met	p.V70M	ENST00000306801	NM_020761.2	70	Gtg/Atg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298723	15298723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	339	899	0	ENST00000263388.2:c.1575G>C	p.Gln525His	p.Q525H	ENST00000263388	NM_000435.2	525	caG/caC																																																																														
BCL6	604	MSKCC	GRCh37	3	187449717	187449717	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	174	318	0	ENST00000232014.4:c.163G>C	p.Gly55Arg	p.G55R	ENST00000232014	NM_001130845.1	55	Ggc/Cgc																																																																														
TP63	8626	MSKCC	GRCh37	3	189586386	189586386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	123	323	0	ENST00000264731.3:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000264731	NM_003722.4	337	cGa/cTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280034	66280034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	51	221	0	ENST00000273854.3:c.1655G>A	p.Ser552Asn	p.S552N	ENST00000273854	NM_004439.5	552	aGt/aAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609752	117609752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	165	412	0	ENST00000368508.3:c.6947G>T	p.Cys2316Phe	p.C2316F	ENST00000368508	NM_002944.2	2316	tGc/tTc																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540131	23540131	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	88	261	0	ENST00000380871.4:c.272del	p.Ala91GlufsTer46	p.A91Efs*46	ENST00000380871	NM_006167.3	91	gCa/ga																																																																														
ARAF	369	MSKCC	GRCh37	X	47426451	47426451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	265	382	0	ENST00000377045.4:c.794C>T	p.Ser265Leu	p.S265L	ENST00000377045	NM_001654.4	265	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443617	49443618	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0046243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	240	680	2	ENST00000301067.7:c.3753_3754delinsT	p.Arg1252GlufsTer78	p.R1252Efs*78	ENST00000301067	NM_003482.3	1251	gcCCga/gcTga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	84	450	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	88	384	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745588	162745588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	43	558	0	ENST00000367921.3:c.2003G>A	p.Arg668His	p.R668H	ENST00000367921	NM_006182.2	668	cGc/cAc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478103	99478103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	92	582	0	ENST00000268035.6:c.3007C>T	p.Arg1003Trp	p.R1003W	ENST00000268035	NM_000875.3	1003	Cgg/Tgg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26101054	26101054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	191	1055	0	ENST00000435504.4:c.38G>T	p.Trp13Leu	p.W13L	ENST00000435504		13	tGg/tTg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265508	152265508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	172	681	0	ENST00000206249.3:c.961G>C	p.Asp321His	p.D321H	ENST00000206249	NM_000125.3	321	Gat/Cat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411185	63411185	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	163	486	0	ENST00000330258.3:c.1982del	p.Pro661HisfsTer3	p.P661Hfs*3	ENST00000330258	NM_152424.3	661	cCa/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0046246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	736	823	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120464957	120464957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	177	447	0	ENST00000256646.2:c.5115G>T	p.Lys1705Asn	p.K1705N	ENST00000256646	NM_024408.3	1705	aaG/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	77	360	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	143	770	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229189	36229189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	197	636	0	ENST00000222270.7:c.7879G>A	p.Gly2627Arg	p.G2627R	ENST00000222270	NM_014727.1	2627	Ggg/Agg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099458	27099459	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	173	410	0	ENST00000324856.7:c.3697dup	p.Tyr1233LeufsTer11	p.Y1233Lfs*11	ENST00000324856	NM_006015.4	1232	cct/ccTt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672337	86672338	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0046249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	162	301	0	ENST00000274376.6:c.2140_2141del	p.Met714GlyfsTer11	p.M714Gfs*11	ENST00000274376	NM_002890.2	713	tcTAtg/tctg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674290	86674290	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	56	347	0	ENST00000274376.6:c.2422C>T	p.Gln808Ter	p.Q808*	ENST00000274376	NM_002890.2	808	Cag/Tag																																																																														
KIT	3815	MSKCC	GRCh37	4	55593613	55593613	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	231	370	0	ENST00000288135.5:c.1679T>G	p.Val560Gly	p.V560G	ENST00000288135	NM_000222.2	560	gTt/gGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	38	419	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	48	504	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119884	70119884	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	105	664	0	ENST00000245479.2:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000245479	NM_000346.3	296	Cag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589622	67589624	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	22	218	0	ENST00000274335.5:c.1386_1388del	p.Glu462_Tyr463delinsAsp	p.E462_Y463delinsD	ENST00000274335		462	gAATat/gat																																																																														
RASA1	5921	MSKCC	GRCh37	5	86629108	86629108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	22	273	0	ENST00000274376.6:c.853C>T	p.Arg285Ter	p.R285*	ENST00000274376	NM_002890.2	285	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175640	112175640	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	57	321	0	ENST00000257430.4:c.4349del	p.Arg1450GlnfsTer23	p.R1450Qfs*23	ENST00000257430	NM_000038.5	1450	cGa/ca																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593557	48593557	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	33	167	0	ENST00000342988.3:c.1308G>C	p.Lys436Asn	p.K436N	ENST00000342988	NM_005359.5	436	aaG/aaC																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944877	31944877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	83	440	0	ENST00000340398.3:c.224C>T	p.Ala75Val	p.A75V	ENST00000340398	NM_001013699.2	75	gCg/gTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117687	70117688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGTT			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	134	923	0	ENST00000245479.2:c.157_158insGTTGT	p.Phe53CysfsTer10	p.F53Cfs*10	ENST00000245479	NM_000346.3	52	acg/acGTGTTg																																																																														
APC	324	MSKCC	GRCh37	5	112162932	112162933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	40	318	0	ENST00000257430.4:c.1537dup	p.Val513GlyfsTer24	p.V513Gfs*24	ENST00000257430	NM_000038.5	512	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0046253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	205	629	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41568555	41568555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	188	487	0	ENST00000263253.7:c.4505C>T	p.Pro1502Leu	p.P1502L	ENST00000263253	NM_001429.3	1502	cCt/cTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845814	151845814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	215	645	0	ENST00000262189.6:c.13198C>T	p.Arg4400Trp	p.R4400W	ENST00000262189	NM_170606.2	4400	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493468	56493468	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	358	481	0	ENST00000267101.3:c.2876A>C	p.Lys959Thr	p.K959T	ENST00000267101	NM_001982.3	959	aAa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	32	660	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619281	37619281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	38	501	0	ENST00000447079.4:c.957C>A	p.Tyr319Ter	p.Y319*	ENST00000447079	NM_015083.1	319	taC/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	92	361	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0046259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	94	222	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0046259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	268	738	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	52	233	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
CBL	867	MSKCC	GRCh37	11	119168095	119168095	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	87	416	0	ENST00000264033.4:c.2155G>A	p.Ala719Thr	p.A719T	ENST00000264033	NM_005188.3	719	Gca/Aca																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998890	11998890	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0046259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	40	202	0	ENST00000353533.5:c.394-2A>T		p.X132_splice	ENST00000353533	NM_003010.3	132																																																																															
BRCA2	675	MSKCC	GRCh37	13	32937657	32937657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	39	417	0	ENST00000380152.3:c.8318C>T	p.Ser2773Phe	p.S2773F	ENST00000380152		2773	tCt/tTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	364	571	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915007	32915007	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	187	381	0	ENST00000380152.3:c.6515C>G	p.Ser2172Ter	p.S2172*	ENST00000380152		2172	tCa/tGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934864	9934864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	114	450	0	ENST00000330684.3:c.1426G>T	p.Asp476Tyr	p.D476Y	ENST00000330684	NM_001134407.1	476	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577495	7577553	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCA	TGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCA	-			P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	104	766	0	ENST00000269305.4:c.728_782+4del		p.X243_splice	ENST00000269305	NM_001126112.2	243																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933877	78933877	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	159	661	0	ENST00000306801.3:c.3478-1G>A		p.X1160_splice	ENST00000306801	NM_020761.2	1160																																																																															
PAK7	0	MSKCC	GRCh37	20	9547031	9547031	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	71	237	0	ENST00000353224.5:c.991G>T	p.Val331Leu	p.V331L	ENST00000353224	NM_177990.2	331	Gtg/Ttg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5055717	5055720	+	frameshift_variant	Frame_Shift_Del	DEL	AAGC	AAGC	-			P-0046261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	68	261	0	ENST00000381652.3:c.991_994del	p.Ala331ThrfsTer11	p.A331Tfs*11	ENST00000381652	NM_004972.3	329	AAGCaa/aa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	244	437	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28597502	28597502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	65	392	0	ENST00000241453.7:c.2403T>G	p.Phe801Leu	p.F801L	ENST00000241453	NM_004119.2	801	ttT/ttG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151917764	151917764	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	113	70	1	ENST00000262189.6:c.3556C>T	p.Gln1186Ter	p.Q1186*	ENST00000262189	NM_170606.2	1186	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	83	385	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913559	32913559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	101	396	0	ENST00000380152.3:c.5073del	p.Lys1691AsnfsTer15	p.K1691Nfs*15	ENST00000380152		1689	gcA/gc																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	125	372	2	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	462	911	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	86	347	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308382	15308383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	192	943	2	ENST00000263388.2:c.125dup	p.Cys43LeufsTer32	p.C43Lfs*32	ENST00000263388	NM_000435.2	42	cct/ccCt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	89	342	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760264	133760264	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	47	741	1	ENST00000318560.5:c.2591delG	p.Gly864AlafsTer12	p.G864Afs*12	ENST00000318560	NM_005157.4	863	Ggg/gg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	272	1052	2	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652386	206652386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	260	863	0	ENST00000367120.3:c.1093G>A	p.Val365Ile	p.V365I	ENST00000367120	NM_014002.3	365	Gtc/Atc																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	51	281	3	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216380	7216380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	229	785	4	ENST00000380728.2:c.868delC	p.Gln290SerfsTer55	p.Q290Sfs*55	ENST00000380728		290	Cag/ag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347080	89347080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	232	866	1	ENST00000301030.4:c.5870C>T	p.Ala1957Val	p.A1957V	ENST00000301030	NM_001256183.1	1957	gCg/gTg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536939	120536939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	202	715	0	ENST00000229340.5:c.247G>A	p.Gly83Arg	p.G83R	ENST00000229340	NM_006861.6	83	Ggg/Agg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	93	588	2	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	140	620	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	147	486	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627688	37627688	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	190	524	0	ENST00000447079.4:c.1607del	p.Pro536HisfsTer74	p.P536Hfs*74	ENST00000447079	NM_015083.1	535	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	181	630	2	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46602913	46602913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	237	843	1	ENST00000263734.3:c.971C>T	p.Thr324Met	p.T324M	ENST00000263734	NM_001430.4	324	aCg/aTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589609	67589610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	25	205	0	ENST00000274335.5:c.1378dupA	p.Ser460LysfsTer5	p.S460Kfs*5	ENST00000274335		458	gaa/gAaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32931923	32931924	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	52	322	0	ENST00000380152.3:c.7667dup	p.Asn2556LysfsTer10	p.N2556Kfs*10	ENST00000380152		2554	-/A																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519037	103519037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	175	619	0	ENST00000355739.4:c.2375C>T	p.Ala792Val	p.A792V	ENST00000355739	NM_000123.3	792	gCg/gTg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217662	7217662	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	127	474	1	ENST00000380728.2:c.265C>T	p.Gln89Ter	p.Q89*	ENST00000380728		89	Cag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66766196	66766196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	190	276	0	ENST00000374690.3:c.1208C>T	p.Ala403Val	p.A403V	ENST00000374690	NM_000044.3	403	gCg/gTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214714	36214714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	178	823	2	ENST00000222270.7:c.3145del	p.Ala1049ArgfsTer133	p.A1049Rfs*133	ENST00000222270	NM_014727.1	1047	cGg/cg																																																																														
ABL1	25	MSKCC	GRCh37	9	133730186	133730186	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	123	477	0	ENST00000318560.5:c.254-2A>G		p.X85_splice	ENST00000318560	NM_005157.4	85																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98211545	98211545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	229	765	0	ENST00000331920.6:c.3610G>A	p.Val1204Met	p.V1204M	ENST00000331920	NM_000264.3	1204	Gtg/Atg																																																																														
NF2	4771	MSKCC	GRCh37	22	30077585	30077585	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	35	351	0	ENST00000338641.4:c.1736del	p.Lys579SerfsTer20	p.K579Sfs*20	ENST00000338641	NM_000268.3	578	Aaa/aa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94910992	94910992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	151	608	2	ENST00000536441.1:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000536441	NM_144665.3	380	Cgg/Tgg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522596	176522596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	333	1094	1	ENST00000292408.4:c.1693C>T	p.Arg565Trp	p.R565W	ENST00000292408	NM_213647.1	565	Cgg/Tgg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24167563	24167563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	217	668	0	ENST00000263121.7:c.947G>A	p.Arg316Gln	p.R316Q	ENST00000263121	NM_003073.3	316	cGg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285086	15285086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	299	1065	2	ENST00000263388.2:c.4529G>A	p.Arg1510His	p.R1510H	ENST00000263388	NM_000435.2	1510	cGc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11291460	11291460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	166	523	2	ENST00000361445.4:c.2546C>T	p.Ala849Val	p.A849V	ENST00000361445	NM_004958.3	849	gCc/gTc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710650	114710650	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	145	471	0	ENST00000543371.1:c.135A>T	p.Lys45Asn	p.K45N	ENST00000543371	NM_001198531.1	45	aaA/aaT																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201787	102201787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	86	367	0	ENST00000263464.3:c.1139C>A	p.Pro380His	p.P380H	ENST00000263464	NM_001165.4	380	cCt/cAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390331	118390331	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	161	504	0	ENST00000534358.1:c.11147-2A>G		p.X3716_splice	ENST00000534358	NM_005933.3	3716																																																																															
GLI1	2735	MSKCC	GRCh37	12	57861162	57861162	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	179	637	0	ENST00000228682.2:c.959C>A	p.Thr320Lys	p.T320K	ENST00000228682	NM_005269.2	320	aCg/aAg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416854	121416856	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	312	1077	0	ENST00000257555.6:c.287_289del	p.Glu96del	p.E96del	ENST00000257555		95	GAG/-																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647863	3647863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	270	991	0	ENST00000294008.3:c.1301C>T	p.Pro434Leu	p.P434L	ENST00000294008	NM_032444.2	434	cCg/cTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786817	3786817	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	123	412	0	ENST00000262367.5:c.4395-1G>T		p.X1465_splice	ENST00000262367	NM_004380.2	1465																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89354980	89354980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	300	955	0	ENST00000301030.4:c.700G>A	p.Asp234Asn	p.D234N	ENST00000301030	NM_001256183.1	234	Gac/Aac																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30321657	30321657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	37	536	0	ENST00000322652.5:c.1512G>T	p.Gln504His	p.Q504H	ENST00000322652	NM_015355.2	504	caG/caT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10257041	10257041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	176	650	0	ENST00000340748.4:c.2832G>T	p.Glu944Asp	p.E944D	ENST00000340748		944	gaG/gaT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10270332	10270332	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	198	596	0	ENST00000340748.4:c.1232+2T>C		p.X411_splice	ENST00000340748		411																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18274095	18274095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	190	681	0	ENST00000222254.8:c.1313G>T	p.Ser438Ile	p.S438I	ENST00000222254	NM_005027.3	438	aGc/aTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18961041	18961041	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	237	600	0	ENST00000262803.5:c.619C>G	p.Leu207Val	p.L207V	ENST00000262803	NM_002911.3	207	Ctg/Gtg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223931	36223931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	338	1155	0	ENST00000222270.7:c.6481C>T	p.Arg2161Cys	p.R2161C	ENST00000222270	NM_014727.1	2161	Cgc/Tgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467481	25467481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	248	809	1	ENST00000264709.3:c.1595G>T	p.Gly532Val	p.G532V	ENST00000264709	NM_175629.2	532	gGc/gTc																																																																														
ALK	238	MSKCC	GRCh37	2	30143125	30143125	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	232	823	0	ENST00000389048.3:c.401A>C	p.Lys134Thr	p.K134T	ENST00000389048	NM_004304.4	134	aAg/aCg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224510	39224510	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	83	475	1	ENST00000402219.2:c.2848del	p.Arg950AspfsTer7	p.R950Dfs*7	ENST00000402219	NM_005633.3	950	Aga/ga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48023110	48023110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	111	357	0	ENST00000234420.5:c.535G>A	p.Ala179Thr	p.A179T	ENST00000234420	NM_000179.2	179	Gca/Aca																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268324	46268324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	97	367	0	ENST00000371998.3:c.2711G>T	p.Gly904Val	p.G904V	ENST00000371998		904	gGg/gTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41574451	41574451	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	199	748	0	ENST00000263253.7:c.6739del	p.Gln2247ArgfsTer32	p.Q2247Rfs*32	ENST00000263253	NM_001429.3	2246	Ccc/cc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49924904	49924904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	296	895	0	ENST00000296474.3:c.4039G>A	p.Ala1347Thr	p.A1347T	ENST00000296474	NM_002447.2	1347	Gca/Aca																																																																														
KDR	3791	MSKCC	GRCh37	4	55953861	55953861	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	29	507	0	ENST00000263923.4:c.3575T>A	p.Leu1192His	p.L1192H	ENST00000263923	NM_002253.2	1192	cTc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630522	187630522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	210	652	0	ENST00000441802.2:c.460T>C	p.Tyr154His	p.Y154H	ENST00000441802	NM_005245.3	154	Tac/Cac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722372	176722372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	39	483	0	ENST00000439151.2:c.8003G>T	p.Gly2668Val	p.G2668V	ENST00000439151	NM_022455.4	2668	gGg/gTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323093	31323094	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CC	CC	-			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	184	830	0	ENST00000412585.2:c.895_895+1del		p.X299_splice	ENST00000412585	NM_005514.6	299																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324204	31324204	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	413	427	0	ENST00000412585.2:c.359A>G	p.Gln120Arg	p.Q120R	ENST00000412585	NM_005514.6	120	cAg/cGg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821059	32821059	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	643	1146	0	ENST00000354258.4:c.535T>C	p.Trp179Arg	p.W179R	ENST00000354258	NM_000593.5	179	Tgg/Cgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891151	151891151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	159	537	1	ENST00000262189.6:c.4603C>T	p.Pro1535Ser	p.P1535S	ENST00000262189	NM_170606.2	1535	Cca/Tca																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841320	15841320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	28	244	0	ENST00000307771.7:c.1404G>T	p.Arg468Ser	p.R468S	ENST00000307771	NM_005089.3	468	agG/agT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032593	47032593	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	280	432	0	ENST00000329236.7:c.268T>G	p.Ser90Ala	p.S90A	ENST00000329236	NM_001204466.1	90	Tca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	91	434	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0046267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	98	813	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138516	11138516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	93	748	0	ENST00000344626.4:c.3272A>G	p.Lys1091Arg	p.K1091R	ENST00000344626	NM_003072.3	1091	aAa/aGa																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186505634	186505635	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0046267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	81	316	0	ENST00000323963.5:c.1043_1044del	p.Tyr348Ter	p.Y348*	ENST00000323963		348	TAt/t																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859205	151859206	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0046267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	23	356	0	ENST00000262189.6:c.11456_11457del	p.Gly3819AlafsTer26	p.G3819Afs*26	ENST00000262189	NM_170606.2	3819	gGA/g																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873378	151873396	+	frameshift_variant	Frame_Shift_Del	DEL	GTAGAGGCTGTTCTTCTAG	GTAGAGGCTGTTCTTCTAG	-			P-0046267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	62	372	0	ENST00000262189.6:c.9142_9160del	p.Leu3048PhefsTer22	p.L3048Ffs*22	ENST00000262189	NM_170606.2	3048	CTAGAAGAACAGCCTCTACtt/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0046270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	57	376	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	58	891	0	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508535	106508535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	37	398	0	ENST00000359195.3:c.529C>T	p.Arg177Cys	p.R177C	ENST00000359195	NM_002649.2	177	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0046270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	83	625	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434488	110434488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	83	676	1	ENST00000375856.3:c.3913G>A	p.Gly1305Arg	p.G1305R	ENST00000375856	NM_003749.2	1305	Ggg/Agg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929124	44929124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	55	577	0	ENST00000377967.4:c.2224G>A	p.Ala742Thr	p.A742T	ENST00000377967	NM_021140.2	742	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579336	7579336	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	211	654	0	ENST00000269305.4:c.351delG	p.Thr118GlnfsTer5	p.T118Qfs*5	ENST00000269305	NM_001126112.2	117	ggG/gg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662735	117662735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	66	316	0	ENST00000368508.3:c.4730C>A	p.Ser1577Tyr	p.S1577Y	ENST00000368508	NM_002944.2	1577	tCt/tAt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967099	18967099	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	186	728	1	ENST00000262803.5:c.1814A>T	p.Glu605Val	p.E605V	ENST00000262803	NM_002911.3	605	gAg/gTg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1918623	1918623	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	123	348	0	ENST00000382891.5:c.786T>A	p.Tyr262Ter	p.Y262*	ENST00000382891	NM_133335.3	262	taT/taA																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554342	106554342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	106	376	0	ENST00000369096.4:c.1870G>T	p.Val624Leu	p.V624L	ENST00000369096	NM_001198.3	624	Gta/Tta																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163819	152163819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	118	401	0	ENST00000206249.3:c.540G>T	p.Lys180Asn	p.K180N	ENST00000206249	NM_000125.3	180	aaG/aaT																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	62	490	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618596	37618606	+	frameshift_variant	Frame_Shift_Del	DEL	TAGACCGAAGG	TAGACCGAAGG	-			P-0046276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	133	491	0	ENST00000447079.4:c.272_282del	p.Leu91ArgfsTer32	p.L91Rfs*32	ENST00000447079	NM_015083.1	91	cTAGACCGAAGG/c																																																																														
FANCC	2176	MSKCC	GRCh37	9	97912245	97912247	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0046276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	35	498	0	ENST00000289081.3:c.644_646del	p.Leu215del	p.L215del	ENST00000289081	NM_000136.2	215	cTCCag/cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	410	367	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	221	815	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097705	27097706	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0046277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	88	489	0	ENST00000324856.7:c.3296_3297del	p.Cys1099SerfsTer5	p.C1099Sfs*5	ENST00000324856	NM_006015.4	1098	caGTgt/cagt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106566	27106566	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	227	768	0	ENST00000324856.7:c.6177del	p.Asn2059LysfsTer76	p.N2059Kfs*76	ENST00000324856	NM_006015.4	2059	aaC/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	62	294	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577122	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0046279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	67	591	0	ENST00000269305.4:c.816_817delinsAG	p.Arg273Gly	p.R273G	ENST00000269305	NM_001126112.2	272	gtGCgt/gtAGgt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16001787	16001787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	51	313	0	ENST00000268712.3:c.2714C>A	p.Pro905His	p.P905H	ENST00000268712	NM_006311.3	905	cCt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603013	48603014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	34	223	0	ENST00000342988.3:c.1315dup	p.Asp439GlyfsTer55	p.D439Gfs*55	ENST00000342988	NM_005359.5	438	-/G																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163924	47163931	+	frameshift_variant	Frame_Shift_Del	DEL	ATCATCCA	ATCATCCA	-			P-0046279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	33	284	0	ENST00000409792.3:c.2195_2202del	p.Leu732TyrfsTer6	p.L732Yfs*6	ENST00000409792	NM_014159.6	732	tTGGATGAT/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0046280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	673	787	2	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224295	36224295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1908	230	716	0	ENST00000222270.7:c.6845C>A	p.Ser2282Tyr	p.S2282Y	ENST00000222270	NM_014727.1	2282	tCc/tAc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082406	16082406	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	151	776	0	ENST00000281043.3:c.224del	p.Pro75ArgfsTer56	p.P75Rfs*56	ENST00000281043	NM_005378.4	74	Ccc/cc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478594	57478594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	68	351	0	ENST00000371085.3:c.266C>T	p.Ala89Val	p.A89V	ENST00000371085	NM_000516.4	89	gCa/gTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1279546	1279546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	134	891	2	ENST00000310581.5:c.1990G>A	p.Val664Met	p.V664M	ENST00000310581	NM_198253.2	664	Gtg/Atg																																																																														
VHL	7428	MSKCC	GRCh37	3	10183868	10183868	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs5030810		P-0046281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	110	538	0	ENST00000256474.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000256474	NM_000551.3	113	Cga/Tga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2131687	2131691	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCA	CCTCA	-			P-0046281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	157	803	0	ENST00000219476.3:c.3702_3706del	p.Leu1235GlyfsTer3	p.L1235Gfs*3	ENST00000219476	NM_000548.3	1234	gcCCTCAtg/gctg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940198	49940198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	138	682	0	ENST00000296474.3:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000296474	NM_002447.2	282	cGg/cAg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637706	52637706	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	65	279	0	ENST00000394830.3:c.2610del	p.Gln870HisfsTer45	p.Q870Hfs*45	ENST00000394830	NM_018313.4	870	caG/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	343	767	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215908	41215908	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	327	500	0	ENST00000357654.3:c.5135G>A	p.Trp1712Ter	p.W1712*	ENST00000357654	NM_007294.3	1712	tGg/tAg																																																																														
MPL	4352	MSKCC	GRCh37	1	43805797	43805797	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0046282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	270	672	0	ENST00000372470.3:c.853G>C	p.Val285Leu	p.V285L	ENST00000372470	NM_005373.2	285	Gtg/Ctg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964421	93964421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	110	491	0	ENST00000369303.4:c.2476A>G	p.Met826Val	p.M826V	ENST00000369303	NM_004440.3	826	Atg/Gtg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873671	151873671	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	210	588	0	ENST00000262189.6:c.8867del	p.Pro2956LeufsTer3	p.P2956Lfs*3	ENST00000262189	NM_170606.2	2956	cCt/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	31	834	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828998	72828998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	21	699	0	ENST00000268489.5:c.7583T>A	p.Ile2528Asn	p.I2528N	ENST00000268489	NM_006885.3	2528	aTc/aAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627812	37627812	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	59	657	0	ENST00000447079.4:c.1728del	p.Pro577LeufsTer33	p.P577Lfs*33	ENST00000447079	NM_015083.1	576	gTt/gt																																																																														
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0046288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	320	526	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
TP53	7157	MSKCC	GRCh37	17	7579337	7579338	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGAATG			P-0046288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	162	722	0	ENST00000269305.4:c.343_349dup	p.Gly117AlafsTer34	p.G117Afs*34	ENST00000269305	NM_001126112.2	117	ggg/gCATTCTGgg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119634894	119634894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	69	182	0	ENST00000316626.5:c.605G>A	p.Gly202Glu	p.G202E	ENST00000316626		202	gGa/gAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241659	55241659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	84	700	0	ENST00000275493.2:c.2107C>T	p.Leu703Phe	p.L703F	ENST00000275493	NM_005228.3	703	Ctc/Ttc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47144882	47144882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	13	500	0	ENST00000409792.3:c.4871C>T	p.Ser1624Phe	p.S1624F	ENST00000409792	NM_014159.6	1624	tCt/tTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161906	47161907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	11	472	1	ENST00000409792.3:c.4219dup	p.Arg1407LysfsTer8	p.R1407Kfs*8	ENST00000409792	NM_014159.6	1407	agg/aAgg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577477	64577576	+	frameshift_variant	Frame_Shift_Del	DEL	CACCAGGTCCGGCTCCTCTCGGCCCAGCTCGGCAGCAAACAGGCGCACCACGTCGTCGATGGAGCGCAGCGGGAACAGCGTCTTCTGGGCGGCCTTCAGC	CACCAGGTCCGGCTCCTCTCGGCCCAGCTCGGCAGCAAACAGGCGCACCACGTCGTCGATGGAGCGCAGCGGGAACAGCGTCTTCTGGGCGGCCTTCAGC	-			P-0046290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	58	766	0	ENST00000337652.1:c.6_105del	p.Leu3SerfsTer83	p.L3Sfs*83	ENST00000337652	NM_130803.2	2	ggGCTGAAGGCCGCCCAGAAGACGCTGTTCCCGCTGCGCTCCATCGACGACGTGGTGCGCCTGTTTGCTGCCGAGCTGGGCCGAGAGGAGCCGGACCTGGTG/gg																																																																														
ATRX	546	MSKCC	GRCh37	X	76912095	76912095	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	47	239	0	ENST00000373344.5:c.4169del	p.Ser1390MetfsTer100	p.S1390Mfs*100	ENST00000373344	NM_000489.3	1390	aGt/at																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947865	178947865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	21	314	0	ENST00000263967.3:c.2740G>A	p.Gly914Arg	p.G914R	ENST00000263967	NM_006218.2	914	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	101	323	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	376	700	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	118	417	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	42052726	42052726	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	26	394	0	ENST00000219905.7:c.7397G>C	p.Arg2466Pro	p.R2466P	ENST00000219905	NM_001164273.1	2466	cGa/cCa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430001	78430001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	75	254	0	ENST00000370768.2:c.878G>T	p.Arg293Ile	p.R293I	ENST00000370768	NM_003902.3	293	aGa/aTa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026871	71026871	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	15	277	0	ENST00000318789.4:c.1351G>A	p.Asp451Asn	p.D451N	ENST00000318789	NM_032682.5	451	Gat/Aat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945109	44945109	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	74	165	0	ENST00000377967.4:c.3434-1G>A		p.X1145_splice	ENST00000377967	NM_021140.2	1145																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706949	117706949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	194	497	1	ENST00000368508.3:c.2201C>T	p.Thr734Met	p.T734M	ENST00000368508	NM_002944.2	734	aCg/aTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797314	135797314	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	15	286	0	ENST00000298552.3:c.555del	p.Tyr185Ter	p.Y185*	ENST00000298552	NM_001162426.1	185	taC/ta																																																																														
MSH6	2956	MSKCC	GRCh37	2	48023174	48023174	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	183	479	0	ENST00000234420.5:c.599C>G	p.Ser200Ter	p.S200*	ENST00000234420	NM_000179.2	200	tCa/tGa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1805533	1805533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	545	847	1	ENST00000260795.2:c.1045C>T	p.His349Tyr	p.H349Y	ENST00000260795		349	Cat/Tat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245515	46245515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	98	345	0	ENST00000334344.6:c.3609G>A	p.Met1203Ile	p.M1203I	ENST00000334344	NM_152641.2	1203	atG/atA																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245765	46245765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	121	415	1	ENST00000334344.6:c.3859G>A	p.Glu1287Lys	p.E1287K	ENST00000334344	NM_152641.2	1287	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420758	49420758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	268	755	0	ENST00000301067.7:c.14991G>C	p.Gln4997His	p.Q4997H	ENST00000301067	NM_003482.3	4997	caG/caC																																																																														
XPO1	7514	MSKCC	GRCh37	2	61717803	61717803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	108	426	0	ENST00000401558.2:c.1996G>C	p.Asp666His	p.D666H	ENST00000401558	NM_003400.3	666	Gat/Cat																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721108	61721108	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	35	413	0	ENST00000401558.2:c.1166C>G	p.Ser389Cys	p.S389C	ENST00000401558	NM_003400.3	389	tCt/tGt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651994	36651995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	189	951	0	ENST00000244741.5:c.116_117insA	p.Cys41LeufsTer7	p.C41Lfs*7	ENST00000244741	NM_000389.4	39	gcg/gcAg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652154	36652155	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	301	942	0	ENST00000244741.5:c.277dup	p.Arg93LysfsTer36	p.R93Kfs*36	ENST00000244741	NM_000389.4	92	-/A																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157511344	157511344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	24	408	0	ENST00000346085.5:c.3862G>A	p.Val1288Met	p.V1288M	ENST00000346085	NM_020732.3	1288	Gtg/Atg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133922	38133922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	267	765	0	ENST00000317025.8:c.3964G>A	p.Asp1322Asn	p.D1322N	ENST00000317025	NM_023034.1	1322	Gat/Aat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	11	391	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	113	231	0	ENST00000288602.6:c.1781A>C	p.Asp594Ala	p.D594A	ENST00000288602	NM_004333.4	594	gAt/gCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398255	25398255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	137	369	1	ENST00000256078.4:c.64C>A	p.Gln22Lys	p.Q22K	ENST00000256078	NM_033360.2	22	Cag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	100	291	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158402	26158402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	296	774	1	ENST00000289316.2:c.5C>T	p.Pro2Leu	p.P2L	ENST00000289316	NM_138720.2	2	cCt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112173374	112173374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	59	178	0	ENST00000257430.4:c.2083C>T	p.Gln695Ter	p.Q695*	ENST00000257430	NM_000038.5	695	Cag/Tag																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125525140	125525140	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	91	306	0	ENST00000428830.2:c.1356G>C	p.Lys452Asn	p.K452N	ENST00000428830	NM_001114121.2	452	aaG/aaC																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748660	43748661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	185	708	0	ENST00000382044.4:c.2145dup	p.Glu716ArgfsTer9	p.E716Rfs*9	ENST00000382044	NM_001141980.1	715	-/A																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371711	45371711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0046293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	12	274	0	ENST00000262160.6:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000262160	NM_005901.5	427	cGa/cAa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395727	45395727	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	83	304	0	ENST00000262160.6:c.407A>T	p.Asp136Val	p.D136V	ENST00000262160	NM_005901.5	136	gAt/gTt																																																																														
CALR	811	MSKCC	GRCh37	19	13049548	13049548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	346	822	1	ENST00000316448.5:c.55C>T	p.Pro19Ser	p.P19S	ENST00000316448	NM_004343.3	19	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028097	69028097	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	112	434	2	ENST00000288368.4:c.3256T>A	p.Cys1086Ser	p.C1086S	ENST00000288368	NM_024870.2	1086	Tgt/Agt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242478	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAG	AATTAAGAGAAG	CAC			P-0046296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	121	309	0	ENST00000275493.2:c.2237_2248delinsCAC	p.Glu746_Ala750delinsAlaPro	p.E746_A750delinsAP	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGca/gCACca																																																																														
MED12	9968	MSKCC	GRCh37	X	70356394	70356412	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGAGCCCCCCAAAACT	TCCAGAGCCCCCCAAAACT	CGGCTCCAG			P-0046296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	160	679	0	ENST00000374080.3:c.5289_5307delinsCGGCTCCAG	p.Pro1764GlyfsTer48	p.P1764Gfs*48	ENST00000374080		1763	gcTCCAGAGCCCCCCAAAACT/gcCGGCTCCAG																																																																														
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0046298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	21	506	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	227	591	2	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446138	49446138	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	182	870	0	ENST00000301067.7:c.1328del	p.Pro443HisfsTer487	p.P443Hfs*487	ENST00000301067	NM_003482.3	443	cCa/ca																																																																														
ALK	238	MSKCC	GRCh37	2	29416220	29416220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	45	580	1	ENST00000389048.3:c.4733C>A	p.Pro1578His	p.P1578H	ENST00000389048	NM_004304.4	1578	cCt/cAt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129396	152129396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	28	558	0	ENST00000206249.3:c.349C>G	p.Leu117Val	p.L117V	ENST00000206249	NM_000125.3	117	Ctg/Gtg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239915	53239934	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAAGACCATGCCCACGTA	GAGAAGACCATGCCCACGTA	-			P-0046298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	147	615	0	ENST00000375401.3:c.1507_1526del	p.Tyr503SerfsTer7	p.Y503Sfs*7	ENST00000375401	NM_004187.3	503	TACGTGGGCATGGTCTTCTCa/a																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	10	387	1	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																														
SESN1	27244	MSKCC	GRCh37	6	109311998	109311998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	21	355	0	ENST00000436639.2:c.1274G>A	p.Arg425His	p.R425H	ENST00000436639	NM_014454.2	425	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	9	204	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	58	875	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637423	47637423	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	27	482	0	ENST00000233146.2:c.557A>T	p.Asn186Ile	p.N186I	ENST00000233146	NM_000251.2	186	aAt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	76	344	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	143	698	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655318	45655318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	60	932	1	ENST00000407780.3:c.534C>A	p.Ser178Arg	p.S178R	ENST00000407780	NM_001283052.1	178	agC/agA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058568	69058568	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	36	502	0	ENST00000288368.4:c.4212T>A	p.His1404Gln	p.H1404Q	ENST00000288368	NM_024870.2	1404	caT/caA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579315	7579316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	142	592	0	ENST00000269305.4:c.371dupG	p.Cys124TrpfsTer25	p.C124Wfs*25	ENST00000269305	NM_001126112.2	124	tgc/tgGc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678541	88678541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145157285		P-0046322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	63	390	0	ENST00000360948.2:c.995C>T	p.Thr332Met	p.T332M	ENST00000360948	NM_001012338.2	332	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	316	401	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	88	450	0	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55961104	55961104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	400	599	0	ENST00000263923.4:c.2836C>T	p.Arg946Cys	p.R946C	ENST00000263923	NM_002253.2	946	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175548	112175548	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	121	290	0	ENST00000257430.4:c.4260delC	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1419	agC/ag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217842	2217842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	168	638	0	ENST00000398665.3:c.2616C>A	p.Ser872Arg	p.S872R	ENST00000398665	NM_032482.2	872	agC/agA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			912	409	333	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			42	12	58	0				ENST00000310581	NM_198253.2																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106508904	106508904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	213	236	1	ENST00000359195.3:c.898G>A	p.Gly300Arg	p.G300R	ENST00000359195	NM_002649.2	300	Gga/Aga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375426	118375426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	130	379	3	ENST00000534358.1:c.8819G>A	p.Arg2940Gln	p.R2940Q	ENST00000534358	NM_005933.3	2940	cGg/cAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499752	18499752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	281	221	0	ENST00000266497.5:c.1607C>T	p.Pro536Leu	p.P536L	ENST00000266497		536	cCa/cTa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436356	110436356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			75	37	115	0	ENST00000375856.3:c.2045G>A	p.Ser682Asn	p.S682N	ENST00000375856	NM_003749.2	682	aGc/aAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857865	9857865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	283	381	0	ENST00000330684.3:c.3536C>T	p.Ser1179Phe	p.S1179F	ENST00000330684	NM_001134407.1	1179	tCc/tTc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260205	19260205	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	116	336	0	ENST00000162023.5:c.88A>G	p.Lys30Glu	p.K30E	ENST00000162023		30	Aag/Gag																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156720	20156720	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			815	402	529	0	ENST00000379607.5:c.37C>G	p.Arg13Gly	p.R13G	ENST00000379607	NM_001412.3	13	Cgc/Ggc																																																																														
ARAF	369	MSKCC	GRCh37	X	47428164	47428164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			604	221	519	0	ENST00000377045.4:c.1124G>C	p.Arg375Pro	p.R375P	ENST00000377045	NM_001654.4	375	cGg/cCg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002418-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	134	483	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687400	117687400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002418-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	181	567	0	ENST00000368508.3:c.2651C>T	p.Ser884Phe	p.S884F	ENST00000368508	NM_002944.2	884	tCc/tTc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002418-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	106	461	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913407		P-0002437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	84	359	0	ENST00000349496.5:c.133T>G	p.Ser45Ala	p.S45A	ENST00000349496	NM_001904.3	45	Tct/Gct																																																																														
KDR	3791	MSKCC	GRCh37	4	55984939	55984939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	82	416	0	ENST00000263923.4:c.190C>T	p.Pro64Ser	p.P64S	ENST00000263923	NM_002253.2	64	Ccc/Tcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557939	187557939	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	58	386	0	ENST00000441802.2:c.3772G>C	p.Glu1258Gln	p.E1258Q	ENST00000441802	NM_005245.3	1258	Gaa/Caa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			56	16	107	0				ENST00000310581	NM_198253.2																																																																																
RAD50	10111	MSKCC	GRCh37	5	131951729	131951729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	54	309	0	ENST00000265335.6:c.3071T>C	p.Leu1024Ser	p.L1024S	ENST00000265335		1024	tTa/tCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	183	385	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230613	46230613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	47	419	0	ENST00000334344.6:c.862C>T	p.Gln288Ter	p.Q288*	ENST00000334344	NM_152641.2	288	Cag/Tag																																																																														
CDK4	1019	MSKCC	GRCh37	12	58143096	58143096	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	87	208	0	ENST00000257904.6:c.688A>C	p.Ile230Leu	p.I230L	ENST00000257904	NM_000075.3	230	Att/Ctt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476301	88476301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	23	376	0	ENST00000360948.2:c.1831G>A	p.Asp611Asn	p.D611N	ENST00000360948	NM_001012338.2	611	Gac/Aac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89881015	89881015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	71	388	0	ENST00000389301.3:c.196G>T	p.Gly66Cys	p.G66C	ENST00000389301	NM_000135.2	66	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577552	7577552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			161	42	262	0	ENST00000269305.4:c.729G>A	p.Met243Ile	p.M243I	ENST00000269305	NM_001126112.2	243	atG/atA																																																																														
AXL	558	MSKCC	GRCh37	19	41759577	41759577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	27	332	0	ENST00000301178.4:c.2000G>A	p.Arg667Lys	p.R667K	ENST00000301178	NM_021913.4	667	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0004871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	87	335	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814930	139814930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	116	661	1	ENST00000247668.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000247668	NM_021138.3	308	cGg/cAg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120535161	120535161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	187	548	0	ENST00000229340.5:c.494C>T	p.Thr165Met	p.T165M	ENST00000229340	NM_006861.6	165	aCg/aTg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73334782	73334782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	54	240	0	ENST00000377767.4:c.2678C>T	p.Ser893Leu	p.S893L	ENST00000377767	NM_014953.3	893	tCa/tTa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335933	73335933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	79	313	0	ENST00000377767.4:c.2362C>T	p.His788Tyr	p.H788Y	ENST00000377767	NM_014953.3	788	Cat/Tat																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336116	73336116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	101	415	0	ENST00000377767.4:c.2287C>T	p.His763Tyr	p.H763Y	ENST00000377767	NM_014953.3	763	Cat/Tat																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336224	73336224	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	83	306	0	ENST00000377767.4:c.2179C>T	p.Gln727Ter	p.Q727*	ENST00000377767	NM_014953.3	727	Cag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76938407	76938407	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	144	479	0	ENST00000373344.5:c.2341C>T	p.Arg781Ter	p.R781*	ENST00000373344	NM_000489.3	781	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	153	594	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			116	344	382	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			116	344	382	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	268	344	0				ENST00000310581	NM_198253.2																																																																																
KDR	3791	MSKCC	GRCh37	4	55972013	55972013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	130	497	0	ENST00000263923.4:c.1631C>T	p.Ser544Phe	p.S544F	ENST00000263923	NM_002253.2	544	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609907	117609907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	128	574	0	ENST00000368508.3:c.6792G>A	p.Met2264Ile	p.M2264I	ENST00000368508	NM_002944.2	2264	atG/atA																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911604	114911604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	397	622	0	ENST00000543371.1:c.1122G>T	p.Leu374Phe	p.L374F	ENST00000543371	NM_001198531.1	374	ttG/ttT																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202531	67202531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	454	646	0	ENST00000312629.5:c.1340T>C	p.Leu447Pro	p.L447P	ENST00000312629	NM_003952.2	447	cTa/cCa																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110618	8110618	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	167	623	0	ENST00000585124.1:c.274T>G	p.Tyr92Asp	p.Y92D	ENST00000585124	NM_004217.3	92	Tac/Gac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439993	56439993	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	341	717	0	ENST00000407977.2:c.599G>A	p.Trp200Ter	p.W200*	ENST00000407977		200	tGg/tAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653807	89653807	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			110	215	500	1	ENST00000371953.3:c.107del	p.Gly36AspfsTer18	p.G36Dfs*18	ENST00000371953	NM_000314.4	35	atG/at																																																																														
BRAF	673	MSKCC	GRCh37	7	140453145	140453146	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			83	326	529	2	ENST00000288602.6:c.1789_1790delinsTC	p.Leu597Ser	p.L597S	ENST00000288602	NM_004333.4	597	CTa/TCa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			116	344	382	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CYLD	1540	MSKCC	GRCh37	16	50826577	50826577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	92	371	0	ENST00000398568.2:c.2302C>T	p.Pro768Ser	p.P768S	ENST00000398568	NM_001042412.1	768	Cct/Tct																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38178604	38178606	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	104	496	0	ENST00000317025.8:c.1793_1795del	p.Lys598del	p.K598del	ENST00000317025	NM_023034.1	598	aAGAtc/atc																																																																														
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	C			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	228	387	0	ENST00000558401.1:c.3G>C	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atC																																																																														
BRAF	673	MSKCC	GRCh37	7	140501361	140501361	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			78	251	315	0	ENST00000288602.6:c.712-1G>A		p.X238_splice	ENST00000288602	NM_004333.4	238																																																																															
PREX2	80243	MSKCC	GRCh37	8	69005956	69005956	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	223	510	0	ENST00000288368.4:c.2367A>T	p.Glu789Asp	p.E789D	ENST00000288368	NM_024870.2	789	gaA/gaT																																																																														
CENPA	1058	MSKCC	GRCh37	2	27009090	27009092	+	missense_variant	Missense_Mutation	ONP	AGC	AGC	TGT			P-0004933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			61	273	137	0	ENST00000335756.4:c.26_28delinsTGT	p.Lys9_Pro10delinsMetSer	p.K9_P10delinsMS	ENST00000335756	NM_001809.3	9	aAGCcc/aTGTcc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888172	112888172	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			817	159	831	0	ENST00000351677.2:c.188A>G	p.Tyr63Cys	p.Y63C	ENST00000351677	NM_002834.3	63	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	578	785	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198272831	198272843	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTCATTATGTGAC	CTCATTATGTGAC	-			P-0005201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	101	707	0	ENST00000335508.6:c.1118_1130del	p.Gly373ValfsTer2	p.G373Vfs*2	ENST00000335508	NM_012433.2	373	gGTCACATAATGAGt/gt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076902	41076902	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	333	803	1	ENST00000373198.4:c.1518G>A	p.Trp506Ter	p.W506*	ENST00000373198	NM_133170.3	506	tgG/tgA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534341	187534341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			517	400	831	0	ENST00000441802.2:c.9385C>T	p.Pro3129Ser	p.P3129S	ENST00000441802	NM_005245.3	3129	Cct/Tct																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495442	149495442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	263	1194	2	ENST00000261799.4:c.3205G>A	p.Glu1069Lys	p.E1069K	ENST00000261799	NM_002609.3	1069	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710963	117710963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	209	439	0	ENST00000368508.3:c.1309C>T	p.Pro437Ser	p.P437S	ENST00000368508	NM_002944.2	437	Cct/Tct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0005201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	306	650	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151851369	151851369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	731	785	0	ENST00000262189.6:c.12122C>T	p.Pro4041Leu	p.P4041L	ENST00000262189	NM_170606.2	4041	cCt/cTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021821	69021821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	714	755	0	ENST00000288368.4:c.3109C>A	p.Leu1037Met	p.L1037M	ENST00000288368	NM_024870.2	1037	Ctg/Atg																																																																														
TEK	7010	MSKCC	GRCh37	9	27209212	27209212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1332	181	785	0	ENST00000380036.4:c.2669G>A	p.Gly890Glu	p.G890E	ENST00000380036	NM_000459.3	890	gGa/gAa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915952	127915952	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	346	697	1	ENST00000373547.4:c.529C>T	p.Arg177Ter	p.R177*	ENST00000373547	NM_002721.4	177	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005655-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			416	240	282	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005655-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			742	308	456	0	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11300570	11300570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005655-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			731	514	521	1	ENST00000361445.4:c.1576C>T	p.Arg526Cys	p.R526C	ENST00000361445	NM_004958.3	526	Cgt/Tgt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937383	76937383	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005655-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			314	151	582	0	ENST00000373344.5:c.3365del	p.Cys1122LeufsTer8	p.C1122Lfs*8	ENST00000373344	NM_000489.3	1122	tGt/tt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0007232-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	913	690	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692886	89692886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007232-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	184	395	0	ENST00000371953.3:c.370T>A	p.Cys124Ser	p.C124S	ENST00000371953	NM_000314.4	124	Tgt/Agt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244907	46244907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007232-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	40	575	0	ENST00000334344.6:c.3001C>T	p.Pro1001Ser	p.P1001S	ENST00000334344	NM_152641.2	1001	Cct/Tct																																																																														
BTK	695	MSKCC	GRCh37	X	100608306	100608306	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007232-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	25	382	0	ENST00000308731.7:c.1784A>C	p.Lys595Thr	p.K595T	ENST00000308731	NM_000061.2	595	aAg/aCg																																																																														
BARD1	580	MSKCC	GRCh37	2	215610556	215610556	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	44	468	0	ENST00000260947.4:c.1700A>C	p.Asp567Ala	p.D567A	ENST00000260947	NM_000465.2	567	gAt/gCt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747889	41747889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	295	504	2	ENST00000226382.2:c.880G>A	p.Val294Ile	p.V294I	ENST00000226382	NM_003924.3	294	Gtc/Atc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117717385	117717385	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	344	496	0	ENST00000368508.3:c.822A>C	p.Glu274Asp	p.E274D	ENST00000368508	NM_002944.2	274	gaA/gaC																																																																														
ATM	472	MSKCC	GRCh37	11	108235809	108235809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	419	384	0	ENST00000278616.4:c.8851G>T	p.Val2951Phe	p.V2951F	ENST00000278616	NM_000051.3	2951	Gtc/Ttc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46233201	46233201	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1927	375	542	0	ENST00000334344.6:c.1420A>T	p.Ser474Cys	p.S474C	ENST00000334344	NM_152641.2	474	Agt/Tgt																																																																														
ATRX	546	MSKCC	GRCh37	X	76874315	76874316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	878	767	0	ENST00000373344.5:c.5406dup	p.Arg1803ThrfsTer7	p.R1803Tfs*7	ENST00000373344	NM_000489.3	1802	-/A																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007690-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	664	760	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437503	52437522	+	frameshift_variant	Frame_Shift_Del	DEL	AGATCACGGACAGCACGGTT	AGATCACGGACAGCACGGTT	-			P-0007690-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			63	630	612	0	ENST00000460680.1:c.1639_1658del	p.Asn547GlyfsTer13	p.N547Gfs*13	ENST00000460680	NM_004656.3	547	AACCGTGCTGTCCGTGATCTg/g																																																																														
BRAF	673	MSKCC	GRCh37	7	140453145	140453146	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0013389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	740	445	1	ENST00000288602.6:c.1789_1790delinsTC	p.Leu597Ser	p.L597S	ENST00000288602	NM_004333.4	597	CTa/TCa																																																																														
TP63	8626	MSKCC	GRCh37	3	189585683	189585683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	255	509	0	ENST00000264731.3:c.944G>A	p.Gly315Glu	p.G315E	ENST00000264731	NM_003722.4	315	gGg/gAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140501306	140501306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	780	385	0	ENST00000288602.6:c.766T>C	p.Phe256Leu	p.F256L	ENST00000288602	NM_004333.4	256	Ttc/Ctc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310916	123310916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	265	617	4	ENST00000358487.5:c.512C>T	p.Ala171Val	p.A171V	ENST00000358487	NM_000141.4	171	gCg/gTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922006	39922006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	389	476	0	ENST00000378444.4:c.4166A>G	p.Asp1389Gly	p.D1389G	ENST00000378444	NM_001123385.1	1389	gAt/gGt																																																																														
CIC	23152	MSKCC	GRCh37	19	42792120	42792121	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0013389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	118	212	0	ENST00000575354.2:c.924_925delinsTT	p.Pro309Ser	p.P309S	ENST00000575354	NM_015125.3	308	gcCCct/gcTTct																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38944593	38944593	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015717-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2112	290	498	0	ENST00000357387.3:c.4868delT	p.Leu1623Ter	p.L1623*	ENST00000357387	NM_152756.3	1623	tTg/tg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118353185	118353185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015717-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			948	97	465	0	ENST00000534358.1:c.4061C>G	p.Pro1354Arg	p.P1354R	ENST00000534358	NM_005933.3	1354	cCt/cGt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			117	573	449	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39074439	39074439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	201	444	0	ENST00000357387.3:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000357387	NM_152756.3	14	cGa/cAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227888	55227888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	154	262	0	ENST00000275493.2:c.1355C>T	p.Ser452Phe	p.S452F	ENST00000275493	NM_005228.3	452	tCc/tTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692914	89692915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATG			P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			79	169	344	0	ENST00000371953.3:c.400_403dup	p.Ile135AsnfsTer46	p.I135Nfs*46	ENST00000371953	NM_000314.4	133	gta/gtAATGa																																																																														
POLE	5426	MSKCC	GRCh37	12	133218970	133218970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	349	615	0	ENST00000320574.5:c.4966C>T	p.Pro1656Ser	p.P1656S	ENST00000320574	NM_006231.2	1656	Ccc/Tcc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273289	18273289	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	212	383	0	ENST00000222254.8:c.1082T>A	p.Ile361Asn	p.I361N	ENST00000222254	NM_005027.3	361	aTc/aAc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274712	198274712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	206	343	0	ENST00000335508.6:c.686C>T	p.Ser229Phe	p.S229F	ENST00000335508	NM_012433.2	229	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212652797	212652798	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			131	67	323	1	ENST00000342788.4:c.508_509delCCinsTT	p.Pro170Leu	p.P170L	ENST00000342788	NM_005235.2	170	CCa/TTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41543904	41543905	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			644	273	496	0	ENST00000263253.7:c.2195_2196delCTinsTA	p.Pro732Leu	p.P732L	ENST00000263253	NM_001429.3	732	cCT/cTA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39002707	39002707	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	189	307	0	ENST00000357387.3:c.322C>T	p.Arg108Ter	p.R108*	ENST00000357387	NM_152756.3	108	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528050	157528051	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			361	222	414	1	ENST00000346085.5:c.5775_5776delCCinsTT	p.Arg1926Ter	p.R1926*	ENST00000346085	NM_020732.3	1925	agCCga/agTTga																																																																														
BRAF	673	MSKCC	GRCh37	7	140534542	140534542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	201	313	0	ENST00000288602.6:c.371C>T	p.Ser124Phe	p.S124F	ENST00000288602	NM_004333.4	124	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	181	396	1				ENST00000310581	NM_198253.2																																																																																
NSD1	64324	MSKCC	GRCh37	5	176638755	176638755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	148	479	0	ENST00000439151.2:c.3356del	p.Pro1119LeufsTer22	p.P1119Lfs*22	ENST00000439151	NM_022455.4	1119	Cct/ct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	930	504	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851675	63851676	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0016533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	323	583	0	ENST00000279873.7:c.2453_2454delCCinsTT	p.Ala818Val	p.A818V	ENST00000279873	NM_032199.2	818	gCC/gTT																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858558	57858558	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	412	589	0	ENST00000228682.2:c.296T>G	p.Ile99Ser	p.I99S	ENST00000228682	NM_005269.2	99	aTc/aGc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134909	41134909	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	238	340	0	ENST00000379561.5:c.719A>G	p.Asn240Ser	p.N240S	ENST00000379561	NM_002015.3	240	aAt/aGt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858585	9858585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	188	396	0	ENST00000330684.3:c.2816G>A	p.Gly939Glu	p.G939E	ENST00000330684	NM_001134407.1	939	gGg/gAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81962190	81962190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114618894		P-0016533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	255	577	2	ENST00000359376.3:c.2542C>T	p.Leu848Phe	p.L848F	ENST00000359376	NM_002661.3	848	Ctt/Ttt																																																																														
ALK	238	MSKCC	GRCh37	2	29754790	29754790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	164	253	0	ENST00000389048.3:c.1145G>A	p.Gly382Glu	p.G382E	ENST00000389048	NM_004304.4	382	gGg/gAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	87	474	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0016799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	30	410	1				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	71	308	1	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445451	49445451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	157	658	0	ENST00000301067.7:c.2015C>T	p.Ser672Phe	p.S672F	ENST00000301067	NM_003482.3	672	tCc/tTc																																																																														
RB1	5925	MSKCC	GRCh37	13	49033905	49033906	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0016799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	158	444	0	ENST00000267163.4:c.2042_2043delinsAA	p.Trp681Ter	p.W681*	ENST00000267163	NM_000321.2	681	tGG/tAA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	83	383	2	ENST00000269305.4:c.530C>T	p.Pro177Leu	p.P177L	ENST00000269305	NM_001126112.2	177	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			172	31	86	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	166	416	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419900	41419900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	66	318	0	ENST00000373198.4:c.421G>A	p.Val141Ile	p.V141I	ENST00000373198	NM_133170.3	141	Gtc/Atc																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	48	203	2	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
ARAF	369	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	125	530	0	ENST00000377045.4:c.641C>T	p.Ser214Phe	p.S214F	ENST00000377045	NM_001654.4	214	tCc/tTc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904872	101904872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	61	246	0	ENST00000374994.4:c.860C>T	p.Ser287Phe	p.S287F	ENST00000374994	NM_004612.2	287	tCc/tTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435918	110435918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	142	321	0	ENST00000375856.3:c.2483C>T	p.Ser828Phe	p.S828F	ENST00000375856	NM_003749.2	828	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950469	68950469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	150	283	1	ENST00000288368.4:c.781C>T	p.Gln261Ter	p.Q261*	ENST00000288368	NM_024870.2	261	Caa/Taa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28971120	28971120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	58	261	0	ENST00000282397.4:c.1637G>A	p.Arg546Lys	p.R546K	ENST00000282397	NM_002019.4	546	aGa/aAa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39595478	39595478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	65	277	0	ENST00000262039.4:c.1364C>T	p.Ser455Leu	p.S455L	ENST00000262039	NM_002647.2	455	tCa/tTa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967804	18967804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			699	80	437	0	ENST00000262803.5:c.1943T>C	p.Val648Ala	p.V648A	ENST00000262803	NM_002911.3	648	gTt/gCt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518174	187518174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	45	270	0	ENST00000441802.2:c.12520C>T	p.Pro4174Ser	p.P4174S	ENST00000441802	NM_005245.3	4174	Ccg/Tcg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518061	176518061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	36	358	1	ENST00000292408.4:c.559G>A	p.Asp187Asn	p.D187N	ENST00000292408	NM_213647.1	187	Gat/Aat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913259	39913259	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	62	321	0	ENST00000378444.4:c.4856A>G	p.Asn1619Ser	p.N1619S	ENST00000378444	NM_001123385.1	1619	aAc/aGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44910999	44910999	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	33	278	0	ENST00000377967.4:c.700A>G	p.Thr234Ala	p.T234A	ENST00000377967	NM_021140.2	234	Aca/Gca																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410879	63410879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	52	368	0	ENST00000330258.3:c.2288G>A	p.Gly763Glu	p.G763E	ENST00000330258	NM_152424.3	763	gGg/gAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151856147	151856149	+	frameshift_variant	Frame_Shift_Del	DEL	CCC	CCC	T			P-0016853-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	48	237	0	ENST00000262189.6:c.11469_11471delinsA	p.Ala3825SerfsTer20	p.A3825Sfs*20	ENST00000262189	NM_170606.2	3823	ttGGGg/ttAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	407	352	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0017539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	411	254	3				ENST00000310581	NM_198253.2																																																																																
BRCA2	675	MSKCC	GRCh37	13	32945213	32945213	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	449	358	0	ENST00000380152.3:c.8608C>T	p.Gln2870Ter	p.Q2870*	ENST00000380152		2870	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717617	89717618	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	444	308	0	ENST00000371953.3:c.645dup	p.Val216CysfsTer27	p.V216Cfs*27	ENST00000371953	NM_000314.4	214	-/T																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060820	38060820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	780	980	0	ENST00000250448.2:c.1169G>A	p.Gly390Glu	p.G390E	ENST00000250448	NM_004496.3	390	gGg/gAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5229327	5229327	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0017539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	562	610	0	ENST00000357368.4:c.2376T>A	p.Tyr792Ter	p.Y792*	ENST00000357368	NM_002850.3	792	taT/taA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449778	8449778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	461	437	0	ENST00000356435.5:c.3935C>T	p.Ser1312Leu	p.S1312L	ENST00000356435		1312	tCa/tTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29665053	29665053	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017939-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	62	574	0	ENST00000358273.4:c.6715C>T	p.Gln2239Ter	p.Q2239*	ENST00000358273	NM_001042492.2	2239	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0017939-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	87	628	0	ENST00000269305.4:c.993+1G>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
ROS1	6098	MSKCC	GRCh37	6	117631445	117631445	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs190667369		P-0017939-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	38	338	0	ENST00000368508.3:c.6234-1G>A		p.X2078_splice	ENST00000368508	NM_002944.2	2078																																																																															
CBL	867	MSKCC	GRCh37	11	119148914	119148914	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017939-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	205	537	0	ENST00000264033.4:c.1134C>A	p.Phe378Leu	p.F378L	ENST00000264033	NM_005188.3	378	ttC/ttA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221759	36221759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017939-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			873	129	918	1	ENST00000222270.7:c.5428C>T	p.Pro1810Ser	p.P1810S	ENST00000222270	NM_014727.1	1810	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112176891	112176891	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017939-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	65	520	0	ENST00000257430.4:c.5600T>G	p.Phe1867Cys	p.F1867C	ENST00000257430	NM_000038.5	1867	tTt/tGt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508811	106508811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017939-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	86	462	0	ENST00000359195.3:c.805G>A	p.Asp269Asn	p.D269N	ENST00000359195	NM_002649.2	269	Gat/Aat																																																																														
SMO	6608	MSKCC	GRCh37	7	128846366	128846366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017939-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	62	687	2	ENST00000249373.3:c.1202C>T	p.Ala401Val	p.A401V	ENST00000249373	NM_005631.4	401	gCg/gTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485828	8485828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017939-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	22	380	0	ENST00000356435.5:c.2989C>T	p.His997Tyr	p.H997Y	ENST00000356435		997	Cat/Tat																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	169	473	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678055	117678055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	80	342	1	ENST00000368508.3:c.3878C>T	p.Ser1293Phe	p.S1293F	ENST00000368508	NM_002944.2	1293	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	91	267	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577141	7577142	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	233	446	1	ENST00000269305.4:c.796_797delGGinsAA	p.Gly266Lys	p.G266K	ENST00000269305	NM_001126112.2	266	GGa/AAa																																																																														
ATR	545	MSKCC	GRCh37	3	142266707	142266707	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	72	411	0	ENST00000350721.4:c.3217C>T	p.Gln1073Ter	p.Q1073*	ENST00000350721	NM_001184.3	1073	Caa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727179	40727179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	91	317	0	ENST00000373198.4:c.3785C>T	p.Pro1262Leu	p.P1262L	ENST00000373198	NM_133170.3	1262	cCt/cTt																																																																														
NF2	4771	MSKCC	GRCh37	22	30057287	30057287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	150	419	0	ENST00000338641.4:c.769C>T	p.Pro257Ser	p.P257S	ENST00000338641	NM_000268.3	257	Ccg/Tcg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444938	49444938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	39	280	0	ENST00000301067.7:c.2528C>T	p.Ser843Phe	p.S843F	ENST00000301067	NM_003482.3	843	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258908	16258908	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199635467		P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	336	667	0	ENST00000375759.3:c.6173C>T	p.Ala2058Val	p.A2058V	ENST00000375759	NM_015001.2	2058	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087401	27087401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	49	437	0	ENST00000324856.7:c.1975C>T	p.Pro659Ser	p.P659S	ENST00000324856	NM_006015.4	659	Cct/Tct																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699214	117699215	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	35	277	0	ENST00000369458.3:c.426_427delinsTT	p.Leu143Phe	p.L143F	ENST00000369458	NM_024626.3	142	aaCCtt/aaTTtt																																																																														
RET	5979	MSKCC	GRCh37	10	43606776	43606776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	83	529	1	ENST00000355710.3:c.1385C>T	p.Ser462Leu	p.S462L	ENST00000355710	NM_020975.4	462	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431198	49431198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	39	380	0	ENST00000301067.7:c.9941C>T	p.Ser3314Phe	p.S3314F	ENST00000301067	NM_003482.3	3314	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434985	49434985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	73	225	1	ENST00000301067.7:c.6568C>T	p.Pro2190Ser	p.P2190S	ENST00000301067	NM_003482.3	2190	Ccc/Tcc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588594	28588594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	86	313	0	ENST00000241453.7:c.2854G>A	p.Glu952Lys	p.E952K	ENST00000241453	NM_004119.2	952	Gaa/Aaa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73350188	73350188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	50	292	0	ENST00000377767.4:c.697C>T	p.Pro233Ser	p.P233S	ENST00000377767	NM_014953.3	233	Ccc/Tcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788603	3788603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	48	392	0	ENST00000262367.5:c.4351C>T	p.His1451Tyr	p.H1451Y	ENST00000262367	NM_004380.2	1451	Cat/Tat																																																																														
NF1	4763	MSKCC	GRCh37	17	29562664	29562665	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	124	374	0	ENST00000358273.4:c.3744_3745del	p.Arg1250AlafsTer13	p.R1250Afs*13	ENST00000358273	NM_001042492.2	1248	gaTTct/gact																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40457635	40457635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	131	412	0	ENST00000345506.4:c.1388C>T	p.Ser463Phe	p.S463F	ENST00000345506	NM_003152.3	463	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212015	36212015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1320	136	756	0	ENST00000222270.7:c.1766C>T	p.Pro589Leu	p.P589L	ENST00000222270	NM_014727.1	589	cCt/cTt																																																																														
ERF	2077	MSKCC	GRCh37	19	42752886	42752886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	69	651	0	ENST00000222329.4:c.1378C>T	p.Pro460Ser	p.P460S	ENST00000222329	NM_006494.2	460	Cca/Tca																																																																														
SRC	6714	MSKCC	GRCh37	20	36014517	36014517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	101	444	1	ENST00000358208.4:c.290C>T	p.Ser97Phe	p.S97F	ENST00000358208		97	tCt/tTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735455	40735455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	46	460	0	ENST00000373198.4:c.3418G>C	p.Ala1140Pro	p.A1140P	ENST00000373198	NM_133170.3	1140	Gcc/Ccc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1953895	1953895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	124	524	0	ENST00000382891.5:c.2074C>T	p.Leu692Phe	p.L692F	ENST00000382891	NM_133335.3	692	Ctc/Ttc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151628	55151628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	72	500	0	ENST00000257290.5:c.2414G>A	p.Gly805Glu	p.G805E	ENST00000257290	NM_006206.4	805	gGa/gAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968153	55968153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	39	393	0	ENST00000263923.4:c.2177G>A	p.Arg726Lys	p.R726K	ENST00000263923	NM_002253.2	726	aGa/aAa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199931	138199931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	57	217	0	ENST00000237289.4:c.1349C>T	p.Pro450Leu	p.P450L	ENST00000237289	NM_001270507.1	450	cCt/cTt																																																																														
HGF	3082	MSKCC	GRCh37	7	81335688	81335688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	107	386	0	ENST00000222390.5:c.1672G>A	p.Asp558Asn	p.D558N	ENST00000222390	NM_000601.4	558	Gat/Aat																																																																														
HGF	3082	MSKCC	GRCh37	7	81372783	81372783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	74	312	0	ENST00000222390.5:c.751C>T	p.Pro251Ser	p.P251S	ENST00000222390	NM_000601.4	251	Ccc/Tcc																																																																														
NBN	4683	MSKCC	GRCh37	8	90965791	90965791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	64	179	0	ENST00000265433.3:c.1526C>T	p.Ser509Phe	p.S509F	ENST00000265433	NM_002485.4	509	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974683	21974693	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCTCCGAC	CGGCCTCCGAC	-			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	97	347	0	ENST00000304494.5:c.134_144del	p.Gly45AspfsTer71	p.G45Dfs*71	ENST00000304494	NM_000077.4	45	gGTCGGAGGCCG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974683	21974693	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCTCCGAC	CGGCCTCCGAC	-			P-0018679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	97	347	0	ENST00000304494.5:c.134_144del	p.Gly45AspfsTer71	p.G45Dfs*71	ENST00000304494	NM_000077.4	45	gGTCGGAGGCCG/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	142	472	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	105	455	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	105	455	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	105	455	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	208	695	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
BARD1	580	MSKCC	GRCh37	2	215645366	215645366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	129	762	0	ENST00000260947.4:c.1232C>T	p.Pro411Leu	p.P411L	ENST00000260947	NM_000465.2	411	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	71	534	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374251	138374251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	256	760	0	ENST00000289153.2:c.3193C>T	p.Arg1065Trp	p.R1065W	ENST00000289153	NM_006219.2	1065	Cgg/Tgg																																																																														
TP63	8626	MSKCC	GRCh37	3	189584548	189584548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	171	816	0	ENST00000264731.3:c.844G>A	p.Gly282Arg	p.G282R	ENST00000264731	NM_003722.4	282	Gga/Aga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076934	41076934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	509	714	1	ENST00000373198.4:c.1486G>A	p.Gly496Arg	p.G496R	ENST00000373198	NM_133170.3	496	Ggg/Agg																																																																														
NF1	4763	MSKCC	GRCh37	17	29560043	29560043	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	68	437	0	ENST00000358273.4:c.3520C>T	p.Gln1174Ter	p.Q1174*	ENST00000358273	NM_001042492.2	1174	Cag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68972936	68972936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	222	539	2	ENST00000288368.4:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000288368	NM_024870.2	421	Gaa/Aaa																																																																														
POLE	5426	MSKCC	GRCh37	12	133209253	133209253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	205	934	0	ENST00000320574.5:c.6133C>T	p.Pro2045Ser	p.P2045S	ENST00000320574	NM_006231.2	2045	Ccc/Tcc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981887	70981887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	478	853	1	ENST00000276594.2:c.209C>T	p.Pro70Leu	p.P70L	ENST00000276594	NM_024504.3	70	cCc/cTc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780863	9780863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	208	897	0	ENST00000377346.4:c.1585G>A	p.Asp529Asn	p.D529N	ENST00000377346	NM_005026.3	529	Gac/Aac																																																																														
RET	5979	MSKCC	GRCh37	10	43619163	43619163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	155	792	2	ENST00000355710.3:c.2846G>A	p.Gly949Glu	p.G949E	ENST00000355710	NM_020975.4	949	gGa/gAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343846	118343847	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	123	771	1	ENST00000534358.1:c.1972_1973delinsTT	p.Pro658Phe	p.P658F	ENST00000534358	NM_005933.3	658	CCc/TTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431559	49431559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	167	782	1	ENST00000301067.7:c.9580C>T	p.His3194Tyr	p.H3194Y	ENST00000301067	NM_003482.3	3194	Cac/Tac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438639	49438640	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	143	841	1	ENST00000301067.7:c.4850_4851delinsAA	p.Arg1617Gln	p.R1617Q	ENST00000301067	NM_003482.3	1617	cGG/cAA																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487608	56487608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	183	790	1	ENST00000267101.3:c.1541C>T	p.Pro514Leu	p.P514L	ENST00000267101	NM_001982.3	514	cCt/cTt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112915464	112915464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	102	623	0	ENST00000351677.2:c.863C>T	p.Thr288Ile	p.T288I	ENST00000351677	NM_002834.3	288	aCc/aTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121886	2121886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	202	991	0	ENST00000219476.3:c.2048C>T	p.Ser683Phe	p.S683F	ENST00000219476	NM_000548.3	683	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857709	9857709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	103	370	0	ENST00000330684.3:c.3692G>A	p.Arg1231Lys	p.R1231K	ENST00000330684	NM_001134407.1	1231	aGg/aAg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761105	59761105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	60	687	0	ENST00000259008.2:c.3302C>T	p.Pro1101Leu	p.P1101L	ENST00000259008	NM_032043.2	1101	cCa/cTa																																																																														
INSR	3643	MSKCC	GRCh37	19	7166326	7166326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	539	916	1	ENST00000302850.5:c.1700C>T	p.Ser567Phe	p.S567F	ENST00000302850	NM_000208.2	567	tCc/tTc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18277062	18277063	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	443	758	6	ENST00000222254.8:c.1509_1510delinsAA	p.Glu504Lys	p.E504K	ENST00000222254	NM_005027.3	503	aaGGaa/aaAAaa																																																																														
AXL	558	MSKCC	GRCh37	19	41763527	41763527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	191	422	0	ENST00000301178.4:c.2326G>A	p.Asp776Asn	p.D776N	ENST00000301178	NM_021913.4	776	Gat/Aat																																																																														
CIC	23152	MSKCC	GRCh37	19	42795486	42795486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	352	908	0	ENST00000575354.2:c.2566C>T	p.Pro856Ser	p.P856S	ENST00000575354	NM_015125.3	856	Cct/Tct																																																																														
ALK	238	MSKCC	GRCh37	2	29551298	29551298	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	419	843	0	ENST00000389048.3:c.1332G>A	p.Trp444Ter	p.W444*	ENST00000389048	NM_004304.4	444	tgG/tgA																																																																														
ALK	238	MSKCC	GRCh37	2	30142991	30142991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62129830		P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	310	1173	3	ENST00000389048.3:c.535C>T	p.Arg179Cys	p.R179C	ENST00000389048	NM_004304.4	179	Cgc/Tgc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661309	227661309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	379	808	1	ENST00000305123.5:c.2146C>T	p.Pro716Ser	p.P716S	ENST00000305123	NM_005544.2	716	Ccc/Tcc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164551	36164551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	119	472	0	ENST00000300305.3:c.1324C>T	p.Leu442Phe	p.L442F	ENST00000300305		442	Ctc/Ttc																																																																														
MITF	4286	MSKCC	GRCh37	3	69987040	69987040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	59	1062	0	ENST00000352241.4:c.422A>G	p.Gln141Arg	p.Q141R	ENST00000352241	NM_198159.2	141	cAg/cGg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55131100	55131100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	87	623	0	ENST00000257290.5:c.643G>A	p.Asp215Asn	p.D215N	ENST00000257290	NM_006206.4	215	Gat/Aat																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057108	180057108	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	571	827	0	ENST00000261937.6:c.514-3C>T		p.X172_splice	ENST00000261937	NM_182925.4	172																																																																															
CARD11	84433	MSKCC	GRCh37	7	2952994	2952995	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	171	865	1	ENST00000396946.4:c.2945_2946delinsAT	p.Thr982Asn	p.T982N	ENST00000396946	NM_032415.4	982	aCC/aAT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962939	2962939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	199	986	0	ENST00000396946.4:c.1969G>A	p.Gly657Arg	p.G657R	ENST00000396946	NM_032415.4	657	Ggg/Agg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509213	106509213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	203	867	1	ENST00000359195.3:c.1207C>T	p.Pro403Ser	p.P403S	ENST00000359195	NM_002649.2	403	Ccc/Tcc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875085	151875085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	26	163	1	ENST00000262189.6:c.7453C>T	p.Pro2485Ser	p.P2485S	ENST00000262189	NM_170606.2	2485	Cca/Tca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633355	8633355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	91	737	0	ENST00000356435.5:c.314G>A	p.Gly105Glu	p.G105E	ENST00000356435		105	gGa/gAa																																																																														
PAX5	5079	MSKCC	GRCh37	9	36882055	36882055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	212	1039	1	ENST00000358127.4:c.958C>T	p.Pro320Ser	p.P320S	ENST00000358127	NM_001280556.1	320	Ccc/Tcc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779160	135779160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	145	627	1	ENST00000298552.3:c.2086C>T	p.Leu696Phe	p.L696F	ENST00000298552	NM_001162426.1	696	Ctt/Ttt																																																																														
NF1	4763	MSKCC	GRCh37	17	29483033	29483034	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	64	723	0	ENST00000358273.4:c.94dup	p.Thr32AsnfsTer6	p.T32Nfs*6	ENST00000358273	NM_001042492.2	31	-/A																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71161724	71161724	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	82	469	0	ENST00000318789.4:c.245A>T	p.Lys82Ile	p.K82I	ENST00000318789	NM_032682.5	82	aAa/aTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	16	746	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0019066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	29	719	5	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435136	110435136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	130	1126	2	ENST00000375856.3:c.3265G>C	p.Ala1089Pro	p.A1089P	ENST00000375856	NM_003749.2	1089	Gcc/Ccc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52724243	52724243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	127	680	4	ENST00000322088.6:c.1375C>T	p.Arg459Cys	p.R459C	ENST00000322088	NM_014225.5	459	Cgc/Tgc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77066775	77066775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	138	609	0	ENST00000356341.3:c.710G>A	p.Arg237Gln	p.R237Q	ENST00000356341	NM_002576.4	237	cGg/cAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246278	46246278	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	48	598	0	ENST00000334344.6:c.4372T>G	p.Ser1458Ala	p.S1458A	ENST00000334344	NM_152641.2	1458	Tca/Gca																																																																														
B2M	567	MSKCC	GRCh37	15	45007833	45007834	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	72	706	0	ENST00000558401.1:c.285dup	p.Asp96ArgfsTer2	p.D96Rfs*2	ENST00000558401	NM_004048.2	94	gaa/gAaa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89845237	89845237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	102	991	0	ENST00000389301.3:c.1798C>G	p.Arg600Gly	p.R600G	ENST00000389301	NM_000135.2	600	Cgt/Ggt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047923	180047923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	98	1276	0	ENST00000261937.6:c.2252G>A	p.Cys751Tyr	p.C751Y	ENST00000261937	NM_182925.4	751	tGc/tAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019909-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	39	921	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0019909-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	80	1211	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
POLE	5426	MSKCC	GRCh37	12	133238161	133238161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019909-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	36	1063	1	ENST00000320574.5:c.2816C>T	p.Ala939Val	p.A939V	ENST00000320574	NM_006231.2	939	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425470	49425470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019909-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	21	1225	0	ENST00000301067.7:c.13018C>T	p.His4340Tyr	p.H4340Y	ENST00000301067	NM_003482.3	4340	Cat/Tat																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437442	110437442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019909-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	25	1084	2	ENST00000375856.3:c.959C>T	p.Pro320Leu	p.P320L	ENST00000375856	NM_003749.2	320	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857304	9857304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019909-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			212	46	856	0	ENST00000330684.3:c.4097C>T	p.Pro1366Leu	p.P1366L	ENST00000330684	NM_001134407.1	1366	cCt/cTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514519	41514519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019909-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	30	1197	0	ENST00000373198.4:c.142G>T	p.Gly48Trp	p.G48W	ENST00000373198	NM_133170.3	48	Ggg/Tgg																																																																														
TP63	8626	MSKCC	GRCh37	3	189526178	189526178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019909-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	37	1052	1	ENST00000264731.3:c.442C>T	p.Pro148Ser	p.P148S	ENST00000264731	NM_003722.4	148	Ccc/Tcc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1953914	1953914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019909-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	41	1312	0	ENST00000382891.5:c.2093C>T	p.Ser698Phe	p.S698F	ENST00000382891	NM_133335.3	698	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112175547	112175547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019909-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			154	37	581	1	ENST00000257430.4:c.4256G>A	p.Ser1419Asn	p.S1419N	ENST00000257430	NM_000038.5	1419	aGc/aAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709102	117709102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019909-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	30	1093	0	ENST00000368508.3:c.1855C>T	p.Pro619Ser	p.P619S	ENST00000368508	NM_002944.2	619	Cct/Tct																																																																														
TEK	7010	MSKCC	GRCh37	9	27157971	27157971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019909-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	34	1047	1	ENST00000380036.4:c.195G>A	p.Met65Ile	p.M65I	ENST00000380036	NM_000459.3	65	atG/atA																																																																														
ABL1	25	MSKCC	GRCh37	9	133753852	133753852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019909-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	39	1094	1	ENST00000318560.5:c.1321C>T	p.Pro441Ser	p.P441S	ENST00000318560	NM_005157.4	441	Ccg/Tcg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244361	41244361	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	63	1070	0	ENST00000357654.3:c.3187T>A	p.Ser1063Thr	p.S1063T	ENST00000357654	NM_007294.3	1063	Tcc/Acc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485921	8485921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	32	624	0	ENST00000356435.5:c.2896C>T	p.Leu966Phe	p.L966F	ENST00000356435		966	Ctc/Ttc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	44	621	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	44	621	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	292	917	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	285	1049	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152382214	152382214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	200	881	0	ENST00000206249.3:c.1324G>A	p.Gly442Arg	p.G442R	ENST00000206249	NM_000125.3	442	Gga/Aga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849054	156849054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1509	253	1039	1	ENST00000524377.1:c.1946G>A	p.Arg649Gln	p.R649Q	ENST00000524377	NM_002529.3	649	cGg/cAg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372314	55372314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	280	922	0	ENST00000297316.4:c.1004C>T	p.Pro335Leu	p.P335L	ENST00000297316	NM_022454.3	335	cCc/cTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793457	18793457	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202064696		P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	182	637	0	ENST00000266497.5:c.4154C>T	p.Pro1385Leu	p.P1385L	ENST00000266497		1385	cCa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031979	10031979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	140	934	4	ENST00000330684.3:c.844G>A	p.Asp282Asn	p.D282N	ENST00000330684	NM_001134407.1	282	Gat/Aat																																																																														
NUF2	83540	MSKCC	GRCh37	1	163309256	163309256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	162	627	0	ENST00000271452.3:c.595C>T	p.His199Tyr	p.H199Y	ENST00000271452	NM_145697.2	199	Cat/Tat																																																																														
TET1	80312	MSKCC	GRCh37	10	70406568	70406568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	147	945	0	ENST00000373644.4:c.4082C>T	p.Ser1361Leu	p.S1361L	ENST00000373644	NM_030625.2	1361	tCa/tTa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643536	38643536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	238	722	1	ENST00000299084.4:c.1006G>T	p.Val336Leu	p.V336L	ENST00000299084	NM_152594.2	336	Gta/Tta																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250890	99250890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	207	655	0	ENST00000268035.6:c.194C>T	p.Ser65Phe	p.S65F	ENST00000268035	NM_000875.3	65	tCc/tTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942027	81942028	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	74	528	0	ENST00000359376.3:c.1564_1565delinsTT	p.Pro522Phe	p.P522F	ENST00000359376	NM_002661.3	522	CCc/TTc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687061	37687061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	92	671	1	ENST00000447079.4:c.3965C>T	p.Ala1322Val	p.A1322V	ENST00000447079	NM_015083.1	1322	gCc/gTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9538320	9538320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	320	756	1	ENST00000353224.5:c.1678C>T	p.His560Tyr	p.H560Y	ENST00000353224	NM_177990.2	560	Cat/Tat																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256765	46256765	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	87	539	0	ENST00000371998.3:c.821C>T	p.Ser274Leu	p.S274L	ENST00000371998		274	tCa/tTa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588814	52588814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	141	818	0	ENST00000394830.3:c.4214C>T	p.Pro1405Leu	p.P1405L	ENST00000394830	NM_018313.4	1405	cCa/cTa																																																																														
MITF	4286	MSKCC	GRCh37	3	69928495	69928496	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	380	957	3	ENST00000352241.4:c.315_316delinsTT	p.Leu106Phe	p.L106F	ENST00000352241	NM_198159.2	105	acCCtt/acTTtt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803604	1803604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	134	903	0	ENST00000260795.2:c.782C>T	p.Ala261Val	p.A261V	ENST00000260795		261	gCc/gTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509943	187509943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	155	506	0	ENST00000441802.2:c.13570C>T	p.Gln4524Ter	p.Q4524*	ENST00000441802	NM_005245.3	4524	Caa/Taa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120290	94120290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	125	506	0	ENST00000369303.4:c.761G>A	p.Gly254Glu	p.G254E	ENST00000369303	NM_004440.3	254	gGa/gAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223598	55223598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	181	622	0	ENST00000275493.2:c.965G>A	p.Gly322Asp	p.G322D	ENST00000275493	NM_005228.3	322	gGc/gAc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38282199	38282199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	240	825	0	ENST00000425967.3:c.857C>T	p.Pro286Leu	p.P286L	ENST00000425967	NM_001174067.1	286	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295253	+	upstream_gene_variant	5'Flank	ONP	GAGG	GAGG	AAGA			P-0020319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	152	733	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	110	797	3				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	885	1175	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750437	41750437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	170	801	0	ENST00000226382.2:c.191C>T	p.Ser64Phe	p.S64F	ENST00000226382	NM_003924.3	64	tCc/tTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515151	149515151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	257	1024	2	ENST00000261799.4:c.331G>A	p.Asp111Asn	p.D111N	ENST00000261799	NM_002609.3	111	Gat/Aat																																																																														
BLM	641	MSKCC	GRCh37	15	91308637	91308637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	143	587	0	ENST00000355112.3:c.2186C>T	p.Ser729Phe	p.S729F	ENST00000355112	NM_000057.2	729	tCc/tTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157510880	157510880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	193	815	0	ENST00000346085.5:c.3655C>T	p.Pro1219Ser	p.P1219S	ENST00000346085	NM_020732.3	1219	Cct/Tct																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222346	53222346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	310	674	0	ENST00000375401.3:c.4486G>A	p.Glu1496Lys	p.E1496K	ENST00000375401	NM_004187.3	1496	Gaa/Aaa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390106	89390106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	109	486	0	ENST00000336596.2:c.855G>A	p.Met285Ile	p.M285I	ENST00000336596	NM_005233.5	285	atG/atA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248717	212248717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	109	559	0	ENST00000342788.4:c.3550G>A	p.Asp1184Asn	p.D1184N	ENST00000342788	NM_005235.2	1184	Gat/Aat																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612807	228612807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	249	971	1	ENST00000366696.1:c.220G>A	p.Glu74Lys	p.E74K	ENST00000366696	NM_003493.2	74	Gag/Aag																																																																														
HGF	3082	MSKCC	GRCh37	7	81374353	81374353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	124	563	1	ENST00000222390.5:c.709C>T	p.His237Tyr	p.H237Y	ENST00000222390	NM_000601.4	237	Cat/Tat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056165	27056165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	164	739	0	ENST00000324856.7:c.1161G>A	p.Met387Ile	p.M387I	ENST00000324856	NM_006015.4	387	atG/atA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644448	18644448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	178	851	2	ENST00000266497.5:c.2626C>T	p.Leu876Phe	p.L876F	ENST00000266497		876	Ctt/Ttt																																																																														
RB1	5925	MSKCC	GRCh37	13	48955470	48955470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	155	683	0	ENST00000267163.4:c.1586A>T	p.Tyr529Phe	p.Y529F	ENST00000267163	NM_000321.2	529	tAc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032128	10032128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	195	880	0	ENST00000330684.3:c.695C>T	p.Ser232Phe	p.S232F	ENST00000330684	NM_001134407.1	232	tCc/tTc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213209	39213209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	213	1014	0	ENST00000402219.2:c.3758C>T	p.Pro1253Leu	p.P1253L	ENST00000402219	NM_005633.3	1253	cCt/cTt																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45658370	45658370	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	183	825	1	ENST00000407780.3:c.16C>T	p.Pro6Ser	p.P6S	ENST00000407780	NM_001283052.1	6	Cct/Tct																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181977	38181977	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	202	785	1	ENST00000396334.3:c.601C>T	p.Arg201Ter	p.R201*	ENST00000396334	NM_002468.4	201	Cga/Tga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610631	52610631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	162	840	1	ENST00000394830.3:c.3542C>T	p.Pro1181Leu	p.P1181L	ENST00000394830	NM_018313.4	1181	cCc/cTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89457263	89457263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	122	778	0	ENST00000336596.2:c.1744C>T	p.His582Tyr	p.H582Y	ENST00000336596	NM_005233.5	582	Cat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112176390	112176390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	46	346	0	ENST00000257430.4:c.5099C>T	p.Ala1700Val	p.A1700V	ENST00000257430	NM_000038.5	1700	gCt/gTt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149465987	149465987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	251	1130	0	ENST00000286301.3:c.4G>A	p.Gly2Ser	p.G2S	ENST00000286301	NM_005211.3	2	Ggc/Agc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038476	180038476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	239	1078	0	ENST00000261937.6:c.3541G>A	p.Glu1181Lys	p.E1181K	ENST00000261937	NM_182925.4	1181	Gaa/Aaa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172018	32172018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	162	842	0	ENST00000375023.3:c.3014G>A	p.Gly1005Glu	p.G1005E	ENST00000375023	NM_004557.3	1005	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964400	93964400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	121	794	1	ENST00000369303.4:c.2497G>A	p.Gly833Arg	p.G833R	ENST00000369303	NM_004440.3	833	Gga/Aga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150381	157150381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	195	810	1	ENST00000346085.5:c.1563G>A	p.Met521Ile	p.M521I	ENST00000346085	NM_020732.3	521	atG/atA																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467778	50467778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	184	762	0	ENST00000331340.3:c.1013C>T	p.Ser338Phe	p.S338F	ENST00000331340	NM_006060.4	338	tCc/tTc																																																																														
MET	4233	MSKCC	GRCh37	7	116371738	116371738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	128	442	1	ENST00000397752.3:c.1217C>T	p.Ser406Leu	p.S406L	ENST00000397752	NM_000245.2	406	tCa/tTa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98238348	98238348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	149	715	0	ENST00000331920.6:c.1696C>T	p.Pro566Ser	p.P566S	ENST00000331920	NM_000264.3	566	Cca/Tca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	209	657	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	273	871	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216983	2216983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	259	1070	0	ENST00000398665.3:c.2438C>T	p.Pro813Leu	p.P813L	ENST00000398665	NM_032482.2	813	cCc/cTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954933	2954933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	436	1014	0	ENST00000396946.4:c.2777C>T	p.Pro926Leu	p.P926L	ENST00000396946	NM_032415.4	926	cCg/cTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248617	212248617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	120	708	1	ENST00000342788.4:c.3650G>A	p.Gly1217Glu	p.G1217E	ENST00000342788	NM_005235.2	1217	gGa/gAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670754	134670754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	113	625	1	ENST00000398015.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000398015	NM_004441.4	222	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	121	742	3				ENST00000310581	NM_198253.2																																																																																
MUTYH	4595	MSKCC	GRCh37	1	45797706	45797706	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	276	930	0	ENST00000372115.3:c.944T>G	p.Val315Gly	p.V315G	ENST00000372115	NM_001048171.1	315	gTg/gGg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247571	123247571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	86	896	0	ENST00000358487.5:c.1920G>A	p.Met640Ile	p.M640I	ENST00000358487	NM_000141.4	640	atG/atA																																																																														
SESN3	143686	MSKCC	GRCh37	11	94911055	94911055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	76	849	0	ENST00000536441.1:c.1075C>T	p.His359Tyr	p.H359Y	ENST00000536441	NM_144665.3	359	Cat/Tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445937	49445937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	117	1310	1	ENST00000301067.7:c.1529C>T	p.Ser510Leu	p.S510L	ENST00000301067	NM_003482.3	510	tCa/tTa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641338	23641338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	143	945	1	ENST00000261584.4:c.2137C>T	p.Pro713Ser	p.P713S	ENST00000261584	NM_024675.3	713	Cct/Tct																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783766	50783766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	97	767	1	ENST00000398568.2:c.157C>T	p.Arg53Cys	p.R53C	ENST00000398568	NM_001042412.1	53	Cgt/Tgt																																																																														
YES1	7525	MSKCC	GRCh37	18	732954	732954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	44	695	1	ENST00000314574.4:c.1303C>T	p.Pro435Ser	p.P435S	ENST00000314574	NM_005433.3	435	Cca/Tca																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208293	5208293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	169	1049	2	ENST00000357368.4:c.5597C>T	p.Thr1866Ile	p.T1866I	ENST00000357368	NM_002850.3	1866	aCt/aTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097135	11097135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	201	946	1	ENST00000344626.4:c.626C>T	p.Pro209Leu	p.P209L	ENST00000344626	NM_003072.3	209	cCg/cTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670529	134670530	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	84	913	1	ENST00000398015.3:c.440_441delinsTT	p.Ser147Phe	p.S147F	ENST00000398015	NM_004441.4	147	tCC/tTT																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806183	1806183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	99	1042	2	ENST00000260795.2:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000260795		401	cCc/cTc																																																																														
SMO	6608	MSKCC	GRCh37	7	128843318	128843318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1496	112	1148	0	ENST00000249373.3:c.425C>T	p.Pro142Leu	p.P142L	ENST00000249373	NM_005631.4	142	cCc/cTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992980	68992980	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	114	523	0	ENST00000288368.4:c.1786-1G>A		p.X596_splice	ENST00000288368	NM_024870.2	596																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8485939	8485939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	42	508	0	ENST00000356435.5:c.2878G>A	p.Asp960Asn	p.D960N	ENST00000356435		960	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971066	21971066	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	242	703	0	ENST00000304494.5:c.292del	p.His98ThrfsTer48	p.H98Tfs*48	ENST00000304494	NM_000077.4	98	Cac/ac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971066	21971066	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	242	703	0	ENST00000304494.5:c.292del	p.His98ThrfsTer48	p.H98Tfs*48	ENST00000304494	NM_000077.4	98	Cac/ac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971066	21971066	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	242	703	0	ENST00000304494.5:c.292del	p.His98ThrfsTer48	p.H98Tfs*48	ENST00000304494	NM_000077.4	98	Cac/ac																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	107	450	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0020451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	164	734	1	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29576033	29576033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	148	593	0	ENST00000358273.4:c.4006C>T	p.Gln1336Ter	p.Q1336*	ENST00000358273	NM_001042492.2	1336	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108141790	108141790	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	29	444	0	ENST00000278616.4:c.2839-1G>C		p.X947_splice	ENST00000278616	NM_000051.3	947																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880221	+	missense_variant	Missense_Mutation	DNP	TG	TG	GT			P-0020451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	125	695	2	ENST00000269571.5:c.2264_2265delinsGT	p.Leu755Cys	p.L755C	ENST00000269571		755	tTG/tGT																																																																														
APC	324	MSKCC	GRCh37	5	112163650	112163650	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	93	422	0	ENST00000257430.4:c.1573T>G	p.Cys525Gly	p.C525G	ENST00000257430	NM_000038.5	525	Tgc/Ggc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967915	93967915	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	124	621	0	ENST00000369303.4:c.2012A>G	p.Tyr671Cys	p.Y671C	ENST00000369303	NM_004440.3	671	tAc/tGc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	171	688	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189584482	189584482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	132	474	3	ENST00000264731.3:c.778C>T	p.Pro260Ser	p.P260S	ENST00000264731	NM_003722.4	260	Cct/Tct																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052983	180052983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1489	301	1198	0	ENST00000261937.6:c.1307C>T	p.Ser436Leu	p.S436L	ENST00000261937	NM_182925.4	436	tCg/tTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	145	639	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	167	605	0				ENST00000310581	NM_198253.2																																																																																
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	157	579	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812293	212812293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	57	518	0	ENST00000342788.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000342788	NM_005235.2	95	Cgt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923318	9923318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	190	871	1	ENST00000330684.3:c.1969G>A	p.Glu657Lys	p.E657K	ENST00000330684	NM_001134407.1	657	Gaa/Aaa																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748479	43748479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs45533131		P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	163	478	3	ENST00000523873.1:c.433C>T	p.Arg145Ter	p.R145*	ENST00000523873		145	Cga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024491	31024491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	288	833	0	ENST00000375687.4:c.3976C>T	p.Pro1326Ser	p.P1326S	ENST00000375687	NM_015338.5	1326	Cct/Tct																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039893	47039893	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	346	468	0	ENST00000329236.7:c.1002G>A	p.Trp334Ter	p.W334*	ENST00000329236	NM_001204466.1	334	tgG/tgA																																																																														
MED12	9968	MSKCC	GRCh37	X	70354255	70354255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	355	506	0	ENST00000374080.3:c.4666G>A	p.Glu1556Lys	p.E1556K	ENST00000374080		1556	Gag/Aag																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553441	106553441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	136	479	1	ENST00000369096.4:c.1406C>T	p.Ser469Leu	p.S469L	ENST00000369096	NM_001198.3	469	tCg/tTg																																																																														
STK40	83931	MSKCC	GRCh37	1	36820903	36820903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	143	835	0	ENST00000373129.3:c.474C>A	p.Asn158Lys	p.N158K	ENST00000373129	NM_032017.1	158	aaC/aaA																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163742	72163742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	136	995	0	ENST00000357731.5:c.616G>A	p.Glu206Lys	p.E206K	ENST00000357731	NM_173808.2	206	Gaa/Aaa																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612783	228612783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	257	826	1	ENST00000366696.1:c.244G>A	p.Asp82Asn	p.D82N	ENST00000366696	NM_003493.2	82	Gac/Aac																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129815	30129815	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	293	798	0	ENST00000263025.4:c.398T>A	p.Leu133Gln	p.L133Q	ENST00000263025	NM_002746.2	133	cTg/cAg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37646830	37646830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	254	745	0	ENST00000447079.4:c.1952C>T	p.Ser651Leu	p.S651L	ENST00000447079	NM_015083.1	651	tCa/tTa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918212	50918213	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	281	972	2	ENST00000440232.2:c.2529_2530delinsAA	p.Val844Ile	p.V844I	ENST00000440232	NM_002691.3	843	ctGGtc/ctAAtc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085666	16085666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	121	890	1	ENST00000281043.3:c.842C>T	p.Thr281Ile	p.T281I	ENST00000281043	NM_005378.4	281	aCt/aTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266487	41266487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	95	627	0	ENST00000349496.5:c.284G>A	p.Arg95Gln	p.R95Q	ENST00000349496	NM_001904.3	95	cGa/cAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589606	67589606	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	91	546	2	ENST00000274335.5:c.1369C>T	p.Gln457Ter	p.Q457*	ENST00000274335		457	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112178961	112178961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	134	534	0	ENST00000257430.4:c.7670C>T	p.Ser2557Phe	p.S2557F	ENST00000257430	NM_000038.5	2557	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971197	21971197	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	281	680	0	ENST00000304494.5:c.161del	p.Met54ArgfsTer92	p.M54Rfs*92	ENST00000304494	NM_000077.4	54	aTg/ag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971197	21971197	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	281	680	0	ENST00000304494.5:c.161del	p.Met54ArgfsTer92	p.M54Rfs*92	ENST00000304494	NM_000077.4	54	aTg/ag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971197	21971197	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	281	680	0	ENST00000304494.5:c.161del	p.Met54ArgfsTer92	p.M54Rfs*92	ENST00000304494	NM_000077.4	54	aTg/ag																																																																														
AR	367	MSKCC	GRCh37	X	66765014	66765014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	318	458	2	ENST00000374690.3:c.26G>T	p.Arg9Met	p.R9M	ENST00000374690	NM_000044.3	9	aGg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	136	434	0				ENST00000310581	NM_198253.2																																																																																
BRD4	23476	MSKCC	GRCh37	19	15354044	15354044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	165	649	0	ENST00000263377.2:c.2836C>T	p.Pro946Ser	p.P946S	ENST00000263377	NM_058243.2	946	Cct/Tct																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871202	35871202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200772681		P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	142	685	0	ENST00000303115.3:c.424G>A	p.Gly142Arg	p.G142R	ENST00000303115	NM_002185.3	142	Gga/Aga																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813334	102813334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	206	849	1	ENST00000307046.8:c.355C>T	p.Arg119Cys	p.R119C	ENST00000307046	NM_001111285.1	119	Cgc/Tgc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256562	115256562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	209	883	1	ENST00000369535.4:c.149C>T	p.Thr50Ile	p.T50I	ENST00000369535	NM_002524.4	50	aCc/aTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164307	47164307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	140	525	0	ENST00000409792.3:c.1819C>T	p.Pro607Ser	p.P607S	ENST00000409792	NM_014159.6	607	Cct/Tct																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244981	123244981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	231	932	0	ENST00000358487.5:c.2123C>T	p.Pro708Leu	p.P708L	ENST00000358487	NM_000141.4	708	cCc/cTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469964	25469964	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	274	968	0	ENST00000264709.3:c.1078A>G	p.Asn360Asp	p.N360D	ENST00000264709	NM_175629.2	360	Aac/Gac																																																																														
STAT3	6774	MSKCC	GRCh37	17	40477071	40477072	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	176	621	0	ENST00000264657.5:c.1373_1374delinsTT	p.Ser458Phe	p.S458F	ENST00000264657	NM_139276.2	458	tCC/tTT																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	583	1131	2	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920067	1920067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	230	928	2	ENST00000382891.5:c.1127C>T	p.Ser376Phe	p.S376F	ENST00000382891	NM_133335.3	376	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69103983	69103983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	211	1071	3	ENST00000288368.4:c.4373C>T	p.Ser1458Leu	p.S1458L	ENST00000288368	NM_024870.2	1458	tCa/tTa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247617	123247617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	184	813	0	ENST00000358487.5:c.1874G>A	p.Arg625Gln	p.R625Q	ENST00000358487	NM_000141.4	625	cGa/cAa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287286	38287286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	249	1129	2	ENST00000425967.3:c.371C>T	p.Ser124Phe	p.S124F	ENST00000425967	NM_001174067.1	124	tCc/tTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680659	30680659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	558	754	2	ENST00000376406.3:c.1060C>T	p.His354Tyr	p.H354Y	ENST00000376406	NM_014641.2	354	Cat/Tat																																																																														
RET	5979	MSKCC	GRCh37	10	43606776	43606776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	232	1052	2	ENST00000355710.3:c.1385C>T	p.Ser462Leu	p.S462L	ENST00000355710	NM_020975.4	462	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100906	41100906	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	167	813	0	ENST00000373198.4:c.1450G>A	p.Val484Ile	p.V484I	ENST00000373198	NM_133170.3	484	Gtt/Att																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2493236	2493236	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	192	738	0	ENST00000355716.4:c.676A>T	p.Lys226Ter	p.K226*	ENST00000355716	NM_003820.2	226	Aaa/Taa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259321	16259321	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	111	419	0	ENST00000375759.3:c.6586G>T	p.Glu2196Ter	p.E2196*	ENST00000375759	NM_015001.2	2196	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099107	27099107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	202	767	0	ENST00000324856.7:c.3523C>T	p.Pro1175Ser	p.P1175S	ENST00000324856	NM_006015.4	1175	Cca/Tca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099332	27099332	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	257	904	0	ENST00000324856.7:c.3570del	p.Phe1191LeufsTer15	p.F1191Lfs*15	ENST00000324856	NM_006015.4	1190	gCc/gc																																																																														
PGR	5241	MSKCC	GRCh37	11	100933436	100933436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	129	542	0	ENST00000325455.5:c.1954G>A	p.Asp652Asn	p.D652N	ENST00000325455	NM_001202474.3	652	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427078	49427078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	169	684	0	ENST00000301067.7:c.11410C>T	p.Pro3804Ser	p.P3804S	ENST00000301067	NM_003482.3	3804	Cct/Tct																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865614	57865614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	268	1094	1	ENST00000228682.2:c.3091G>A	p.Gly1031Arg	p.G1031R	ENST00000228682	NM_005269.2	1031	Gga/Aga																																																																														
POLE	5426	MSKCC	GRCh37	12	133220093	133220093	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	272	1096	0	ENST00000320574.5:c.4344T>G	p.Asn1448Lys	p.N1448K	ENST00000320574	NM_006231.2	1448	aaT/aaG																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001940	29001940	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	243	833	0	ENST00000282397.4:c.1225A>T	p.Ile409Leu	p.I409L	ENST00000282397	NM_002019.4	409	Ata/Tta																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30095707	30095707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	221	828	0	ENST00000331968.5:c.1781T>C	p.Phe594Ser	p.F594S	ENST00000331968	NM_002742.2	594	tTt/tCt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457421	67457421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	206	900	0	ENST00000327367.4:c.395C>T	p.Thr132Ile	p.T132I	ENST00000327367	NM_005902.3	132	aCa/aTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858025	9858025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	189	848	1	ENST00000330684.3:c.3376C>T	p.Pro1126Ser	p.P1126S	ENST00000330684	NM_001134407.1	1126	Cct/Tct																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041995	14041995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	139	540	0	ENST00000311895.7:c.2542C>T	p.Pro848Ser	p.P848S	ENST00000311895	NM_005236.2	848	Ccc/Tcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29654800	29654800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	177	632	0	ENST00000358273.4:c.5552C>T	p.Pro1851Leu	p.P1851L	ENST00000358273	NM_001042492.2	1851	cCt/cTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41242979	41242979	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	187	799	0	ENST00000357654.3:c.4167T>G	p.Ser1389Arg	p.S1389R	ENST00000357654	NM_007294.3	1389	agT/agG																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435668	56435668	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	219	819	0	ENST00000407977.2:c.1469T>G	p.Val490Gly	p.V490G	ENST00000407977		490	gTc/gGc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78858940	78858940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	159	646	0	ENST00000306801.3:c.1975G>A	p.Val659Ile	p.V659I	ENST00000306801	NM_020761.2	659	Gtc/Atc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39575890	39575890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	170	738	2	ENST00000262039.4:c.823C>T	p.Arg275Trp	p.R275W	ENST00000262039	NM_002647.2	275	Cgg/Tgg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265618	10265618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	208	870	0	ENST00000340748.4:c.1559C>T	p.Ser520Phe	p.S520F	ENST00000340748		520	tCc/tTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905489	50905489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	304	1093	0	ENST00000440232.2:c.617C>T	p.Pro206Leu	p.P206L	ENST00000440232	NM_002691.3	206	cCc/cTc																																																																														
ALK	238	MSKCC	GRCh37	2	29498007	29498007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	215	839	0	ENST00000389048.3:c.1999G>T	p.Gly667Trp	p.G667W	ENST00000389048	NM_004304.4	667	Ggg/Tgg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190738359	190738359	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143554211		P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	135	597	0	ENST00000441310.2:c.2611C>T	p.Arg871Cys	p.R871C	ENST00000441310	NM_000534.4	871	Cgc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537966	212537966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	143	676	0	ENST00000342788.4:c.1639G>A	p.Glu547Lys	p.E547K	ENST00000342788	NM_005235.2	547	Gag/Aag																																																																														
BARD1	580	MSKCC	GRCh37	2	215595166	215595166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	207	813	0	ENST00000260947.4:c.1970C>A	p.Pro657Gln	p.P657Q	ENST00000260947	NM_000465.2	657	cCa/cAa																																																																														
INHA	3623	MSKCC	GRCh37	2	220439544	220439544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	255	949	2	ENST00000243786.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000243786	NM_002191.3	133	Ttc/Ctc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371577	225371578	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	GG	GG	AA			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	116	734	2	ENST00000264414.4:c.1026_1027delinsTT	p.Gln343Ter	p.Q343*	ENST00000264414	NM_003590.4	342	atCCag/atTTag																																																																														
PAK7	0	MSKCC	GRCh37	20	9546651	9546651	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	177	677	0	ENST00000353224.5:c.1371A>C	p.Glu457Asp	p.E457D	ENST00000353224	NM_177990.2	457	gaA/gaC																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877444	40877444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	132	755	0	ENST00000373198.4:c.2252C>T	p.Ser751Phe	p.S751F	ENST00000373198	NM_133170.3	751	tCt/tTt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513297	44513298	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	88	1025	2	ENST00000291552.4:c.637_638delinsAA	p.Gly213Asn	p.G213N	ENST00000291552	NM_006758.2	213	GGt/AAt																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288071	21288071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	95	470	1	ENST00000354336.3:c.316C>T	p.Pro106Ser	p.P106S	ENST00000354336	NM_005207.3	106	Cca/Tca																																																																														
MLH1	4292	MSKCC	GRCh37	3	37059018	37059018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	183	864	0	ENST00000231790.2:c.812C>T	p.Ser271Phe	p.S271F	ENST00000231790	NM_000249.3	271	tCc/tTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670364	134670364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	172	611	2	ENST00000398015.3:c.275C>T	p.Thr92Ile	p.T92I	ENST00000398015	NM_004441.4	92	aCt/aTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55974003	55974003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	220	859	2	ENST00000263923.4:c.1313G>A	p.Gly438Asp	p.G438D	ENST00000263923	NM_002253.2	438	gGc/gAc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873742	35873742	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	106	581	0	ENST00000303115.3:c.698A>T	p.Asn233Ile	p.N233I	ENST00000303115	NM_002185.3	233	aAt/aTt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672539	30672539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	187	789	4	ENST00000376406.3:c.4421C>T	p.Thr1474Ile	p.T1474I	ENST00000376406	NM_014641.2	1474	aCt/aTt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673676	30673676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	213	845	1	ENST00000376406.3:c.3284C>T	p.Ser1095Phe	p.S1095F	ENST00000376406	NM_014641.2	1095	tCc/tTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32165258	32165258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	287	1057	0	ENST00000375023.3:c.4870G>A	p.Ala1624Thr	p.A1624T	ENST00000375023	NM_004557.3	1624	Gcc/Acc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797241	32797241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	254	1048	0	ENST00000374899.4:c.1868G>A	p.Arg623Gln	p.R623Q	ENST00000374899	NM_018833.2	623	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663701	117663701	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	113	431	1	ENST00000368508.3:c.4531C>T	p.Gln1511Ter	p.Q1511*	ENST00000368508	NM_002944.2	1511	Cag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718189	117718189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	153	779	0	ENST00000368508.3:c.668G>A	p.Gly223Glu	p.G223E	ENST00000368508	NM_002944.2	223	gGa/gAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528697	157528697	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	199	812	0	ENST00000346085.5:c.6422G>C	p.Gly2141Ala	p.G2141A	ENST00000346085	NM_020732.3	2141	gGg/gCg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426893	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	156	848	2	ENST00000356142.4:c.85_86delinsAT	p.Pro29Ile	p.P29I	ENST00000356142	NM_018890.3	29	CCt/ATt																																																																														
ABL1	25	MSKCC	GRCh37	9	133759373	133759373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	462	947	0	ENST00000318560.5:c.1697del	p.Pro566LeufsTer19	p.P566Lfs*19	ENST00000318560	NM_005157.4	566	Cct/ct																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779103	135779104	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	321	693	3	ENST00000298552.3:c.2142_2143delinsTT	p.Arg715Trp	p.R715W	ENST00000298552	NM_001162426.1	714	ctCCgg/ctTTgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139392000	139392000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	363	756	0	ENST00000277541.6:c.6191C>T	p.Pro2064Leu	p.P2064L	ENST00000277541	NM_017617.3	2064	cCc/cTc																																																																														
AR	367	MSKCC	GRCh37	X	66765319	66765319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	301	495	0	ENST00000374690.3:c.331G>A	p.Asp111Asn	p.D111N	ENST00000374690	NM_000044.3	111	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	39	623	1				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	191	1058	3	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663222	227663222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	110	912	0	ENST00000305123.5:c.233C>T	p.Ser78Phe	p.S78F	ENST00000305123	NM_005544.2	78	tCc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245404	153245404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	110	1024	2	ENST00000281708.4:c.1787C>T	p.Ser596Phe	p.S596F	ENST00000281708	NM_033632.3	596	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	90	692	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	90	692	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	90	692	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120459136	120459136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	103	1004	0	ENST00000256646.2:c.6209G>A	p.Ser2070Asn	p.S2070N	ENST00000256646	NM_024408.3	2070	aGc/aAc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193218866	193218867	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	36	371	1	ENST00000367435.3:c.1424_1425delinsTT	p.Ala475Val	p.A475V	ENST00000367435	NM_024529.4	475	gCC/gTT																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274651	123274651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	81	633	0	ENST00000358487.5:c.1267C>T	p.Pro423Ser	p.P423S	ENST00000358487	NM_000141.4	423	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443651	49443651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	93	977	0	ENST00000301067.7:c.3720G>A	p.Met1240Ile	p.M1240I	ENST00000301067	NM_003482.3	1240	atG/atA																																																																														
B2M	567	MSKCC	GRCh37	15	45008525	45008525	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T	rs111795848		P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	83	599	0	ENST00000558401.1:c.347-2A>T		p.X116_splice	ENST00000558401	NM_004048.2	116																																																																															
CTCF	10664	MSKCC	GRCh37	16	67670728	67670728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	102	926	0	ENST00000264010.4:c.1973G>A	p.Arg658Lys	p.R658K	ENST00000264010	NM_006565.3	658	aGa/aAa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250753	10250753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	131	1174	0	ENST00000340748.4:c.3727T>C	p.Phe1243Leu	p.F1243L	ENST00000340748		1243	Ttc/Ctc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281179	15281179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	176	1371	1	ENST00000263388.2:c.5077C>T	p.Arg1693Trp	p.R1693W	ENST00000263388	NM_000435.2	1693	Cgg/Tgg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18972832	18972832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	80	775	0	ENST00000262803.5:c.2471C>G	p.Ala824Gly	p.A824G	ENST00000262803	NM_002911.3	824	gCc/gGc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719270	61719270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	123	754	2	ENST00000401558.2:c.1787G>A	p.Arg596His	p.R596H	ENST00000401558	NM_003400.3	596	cGc/cAc																																																																														
NF2	4771	MSKCC	GRCh37	22	30054193	30054193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	91	639	0	ENST00000338641.4:c.615G>A	p.Met205Ile	p.M205I	ENST00000338641	NM_000268.3	205	atG/atA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164811	47164811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	73	565	0	ENST00000409792.3:c.1315C>T	p.Pro439Ser	p.P439S	ENST00000409792	NM_014159.6	439	Cct/Tct																																																																														
KIT	3815	MSKCC	GRCh37	4	55564514	55564515	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	62	627	1	ENST00000288135.5:c.402_403delinsTT	p.Arg135Cys	p.R135C	ENST00000288135	NM_000222.2	134	gtCCgc/gtTTgc																																																																														
APC	324	MSKCC	GRCh37	5	112176915	112176915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	73	627	0	ENST00000257430.4:c.5624C>T	p.Ser1875Phe	p.S1875F	ENST00000257430	NM_000038.5	1875	tCc/tTc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32820818	32820819	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	60	980	0	ENST00000354258.4:c.775_776del	p.Leu259TrpfsTer14	p.L259Wfs*14	ENST00000354258	NM_000593.5	259	CTt/t																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710591	117710591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	91	520	0	ENST00000368508.3:c.1681C>T	p.Pro561Ser	p.P561S	ENST00000368508	NM_002944.2	561	Ccg/Tcg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860094	151860094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143821095		P-0021121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	66	571	0	ENST00000262189.6:c.10568C>T	p.Pro3523Leu	p.P3523L	ENST00000262189	NM_170606.2	3523	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	229	832	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	343	808	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169174	32169174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	944	908	1	ENST00000375023.3:c.3859G>A	p.Glu1287Lys	p.E1287K	ENST00000375023	NM_004557.3	1287	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	313	727	2	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	300	653	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331660	8331660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	273	666	0	ENST00000356435.5:c.5456G>A	p.Gly1819Glu	p.G1819E	ENST00000356435		1819	gGa/gAa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	405	963	0	ENST00000345506.4:c.1096C>T	p.Pro366Ser	p.P366S	ENST00000345506	NM_003152.3	366	Ccc/Tcc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	354	346	0	ENST00000379607.5:c.38G>A	p.Arg13His	p.R13H	ENST00000379607	NM_001412.3	13	cGc/cAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29553539	29553539	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	214	489	2	ENST00000358273.4:c.2088G>A	p.Trp696Ter	p.W696*	ENST00000358273	NM_001042492.2	696	tgG/tgA																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811603	102811603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	307	774	0	ENST00000307046.8:c.581G>A	p.Gly194Glu	p.G194E	ENST00000307046	NM_001111285.1	194	gGa/gAa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12633256	12633256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	763	795	0	ENST00000251849.4:c.1144C>T	p.Pro382Ser	p.P382S	ENST00000251849	NM_002880.3	382	Cca/Tca																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120497	94120497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	188	461	0	ENST00000369303.4:c.554C>T	p.Ala185Val	p.A185V	ENST00000369303	NM_004440.3	185	gCc/gTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514495	149514495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	337	799	0	ENST00000261799.4:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000261799	NM_002609.3	150	cGa/cAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691123	18691123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	265	571	0	ENST00000266497.5:c.3234G>A	p.Met1078Ile	p.M1078I	ENST00000266497		1078	atG/atA																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652390	206652390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	668	894	1	ENST00000367120.3:c.1097C>T	p.Ser366Leu	p.S366L	ENST00000367120	NM_014002.3	366	tCa/tTa																																																																														
PARP1	142	MSKCC	GRCh37	1	226570833	226570833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	331	744	0	ENST00000366794.5:c.1063C>T	p.Arg355Cys	p.R355C	ENST00000366794	NM_001618.3	355	Cgt/Tgt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180519	94180519	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	260	573	0	ENST00000323929.3:c.1649T>A	p.Leu550Ter	p.L550*	ENST00000323929	NM_005591.3	550	tTa/tAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343036	118343036	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	155	321	0	ENST00000534358.1:c.1162G>T	p.Glu388Ter	p.E388*	ENST00000534358	NM_005933.3	388	Gaa/Taa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69218164	69218164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	290	578	0	ENST00000462284.1:c.380C>T	p.Ser127Phe	p.S127F	ENST00000462284	NM_002392.5	127	tCt/tTt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107713	30107713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	307	717	1	ENST00000331968.5:c.967G>A	p.Glu323Lys	p.E323K	ENST00000331968	NM_002742.2	323	Gaa/Aaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422085	81422085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	227	660	0	ENST00000298171.2:c.61G>A	p.Gly21Arg	p.G21R	ENST00000298171	NM_000369.2	21	Gga/Aga																																																																														
BLM	641	MSKCC	GRCh37	15	91347422	91347422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	201	448	0	ENST00000355112.3:c.3584C>T	p.Ser1195Phe	p.S1195F	ENST00000355112	NM_000057.2	1195	tCc/tTc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041834	14041835	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	208	591	1	ENST00000311895.7:c.2381_2382delinsTT	p.His794Leu	p.H794L	ENST00000311895	NM_005236.2	794	cAC/cTT																																																																														
CBFB	865	MSKCC	GRCh37	16	67063634	67063634	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	263	693	0	ENST00000412916.2:c.83A>G	p.Lys28Arg	p.K28R	ENST00000412916		28	aAg/aGg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81891945	81891945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	247	684	0	ENST00000359376.3:c.415C>T	p.Pro139Ser	p.P139S	ENST00000359376	NM_002661.3	139	Ccc/Tcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29679316	29679316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	243	527	0	ENST00000358273.4:c.7499C>T	p.Ser2500Phe	p.S2500F	ENST00000358273	NM_001042492.2	2500	tCt/tTt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965292	25965292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61744557		P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	294	638	1	ENST00000435504.4:c.3914C>T	p.Pro1305Leu	p.P1305L	ENST00000435504		1305	cCc/cTc																																																																														
ALK	238	MSKCC	GRCh37	2	29455261	29455262	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	278	732	0	ENST00000389048.3:c.2540_2541delinsAA	p.Arg847Lys	p.R847K	ENST00000389048	NM_004304.4	847	aGG/aAA																																																																														
CASP8	841	MSKCC	GRCh37	2	202131357	202131357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	195	589	1	ENST00000358485.4:c.325G>A	p.Glu109Lys	p.E109K	ENST00000358485	NM_001080125.1	109	Gaa/Aaa																																																																														
SRC	6714	MSKCC	GRCh37	20	36031630	36031630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	331	966	0	ENST00000358208.4:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000358208		487	Ccg/Tcg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52613068	52613068	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	408	401	0	ENST00000394830.3:c.3458+2T>G		p.X1153_splice	ENST00000394830	NM_018313.4	1153																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200708	128200708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	361	1015	1	ENST00000341105.2:c.1097G>A	p.Gly366Glu	p.G366E	ENST00000341105	NM_032638.4	366	gGg/gAg																																																																														
ATR	545	MSKCC	GRCh37	3	142238554	142238554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	220	411	0	ENST00000350721.4:c.4339C>T	p.Pro1447Ser	p.P1447S	ENST00000350721	NM_001184.3	1447	Cct/Tct																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245429	153245430	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	293	804	1	ENST00000281708.4:c.1761_1762delinsAA	p.Met587_Glu588delinsIleLys	p.M587_E588delinsIK	ENST00000281708	NM_033632.3	587	atGGaa/atAAaa																																																																														
SDHA	6389	MSKCC	GRCh37	5	226049	226049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	93	124	0	ENST00000264932.6:c.508C>T	p.Gln170Ter	p.Q170*	ENST00000264932	NM_004168.2	170	Cag/Tag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526700	31526700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	387	1038	0	ENST00000344624.3:c.340C>T	p.Pro114Ser	p.P114S	ENST00000344624		114	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112174119	112174119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	193	458	0	ENST00000257430.4:c.2828C>T	p.Ser943Leu	p.S943L	ENST00000257430	NM_000038.5	943	tCa/tTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178548	32178548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	252	778	0	ENST00000375023.3:c.2846C>T	p.Pro949Leu	p.P949L	ENST00000375023	NM_004557.3	949	cCc/cTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120465	94120465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	171	430	0	ENST00000369303.4:c.586G>T	p.Val196Phe	p.V196F	ENST00000369303	NM_004440.3	196	Gtt/Ttt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508433	106508433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	82	259	0	ENST00000359195.3:c.427C>T	p.Pro143Ser	p.P143S	ENST00000359195	NM_002649.2	143	Ccc/Tcc																																																																														
LYN	4067	MSKCC	GRCh37	8	56863263	56863264	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	273	820	2	ENST00000519728.1:c.407_408delinsAT	p.Arg136Asn	p.R136N	ENST00000519728	NM_002350.3	136	aGG/aAT																																																																														
PREX2	80243	MSKCC	GRCh37	8	68930141	68930141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	214	484	1	ENST00000288368.4:c.202G>A	p.Glu68Lys	p.E68K	ENST00000288368	NM_024870.2	68	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69050653	69050653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	217	541	0	ENST00000288368.4:c.3988G>A	p.Asp1330Asn	p.D1330N	ENST00000288368	NM_024870.2	1330	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389287	8389287	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	381	870	0	ENST00000356435.5:c.4331G>A	p.Trp1444Ter	p.W1444*	ENST00000356435		1444	tGg/tAg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	129	632	1	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	55	656	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275642	41275642	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	118	702	0	ENST00000349496.5:c.1537T>G	p.Leu513Val	p.L513V	ENST00000349496	NM_001904.3	513	Ttg/Gtg																																																																														
ATR	545	MSKCC	GRCh37	3	142243007	142243007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	34	716	0	ENST00000350721.4:c.3980C>T	p.Thr1327Ile	p.T1327I	ENST00000350721	NM_001184.3	1327	aCa/aTa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80336393	80336393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	163	805	0	ENST00000286548.4:c.926T>G	p.Ile309Ser	p.I309S	ENST00000286548	NM_002072.3	309	aTt/aGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332681	153332684	+	stop_gained	Nonsense_Mutation	DEL	GAGG	GAGG	C			P-0021198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	82	879	1	ENST00000281708.4:c.272_275delinsG	p.Ser91_Ser92delinsTer	p.S91_S92delins*	ENST00000281708	NM_033632.3	91	tCCTCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	212	932	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	190	782	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	190	782	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
TP63	8626	MSKCC	GRCh37	3	189455653	189455653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	140	709	0	ENST00000264731.3:c.187G>A	p.Glu63Lys	p.E63K	ENST00000264731	NM_003722.4	63	Gaa/Aaa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	216	905	1	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984848	9984848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	201	960	0	ENST00000330684.3:c.1117G>A	p.Glu373Lys	p.E373K	ENST00000330684	NM_001134407.1	373	Gaa/Aaa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	719	1537	1	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
TP63	8626	MSKCC	GRCh37	3	189587161	189587161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	206	932	2	ENST00000264731.3:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000264731	NM_003722.4	393	cGa/cAa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482295	87482295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	254	1060	1	ENST00000277120.3:c.1582G>A	p.Glu528Lys	p.E528K	ENST00000277120		528	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	158	740	1				ENST00000310581	NM_198253.2																																																																																
LYN	4067	MSKCC	GRCh37	8	56912075	56912075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	264	1108	4	ENST00000519728.1:c.1303G>A	p.Glu435Lys	p.E435K	ENST00000519728	NM_002350.3	435	Gaa/Aaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612284	189612284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	122	564	1	ENST00000264731.3:c.2036G>A	p.Gly679Glu	p.G679E	ENST00000264731	NM_003722.4	679	gGg/gAg																																																																														
STK40	83931	MSKCC	GRCh37	1	36823857	36823857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	173	603	0	ENST00000373129.3:c.325C>T	p.His109Tyr	p.H109Y	ENST00000373129	NM_032017.1	109	Cac/Tac																																																																														
RFWD2	0	MSKCC	GRCh37	1	175958589	175958589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	337	826	1	ENST00000367669.3:c.1756C>T	p.Arg586Cys	p.R586C	ENST00000367669	NM_022457.5	586	Cgt/Tgt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123245033	123245033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	207	757	0	ENST00000358487.5:c.2071G>A	p.Val691Met	p.V691M	ENST00000358487	NM_000141.4	691	Gtg/Atg																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14317361	14317361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	294	982	0	ENST00000256196.4:c.149C>T	p.Ser50Phe	p.S50F	ENST00000256196		50	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442965	49442965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	291	959	0	ENST00000301067.7:c.3943C>T	p.Arg1315Cys	p.R1315C	ENST00000301067	NM_003482.3	1315	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444081	49444082	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	190	886	2	ENST00000301067.7:c.3289_3290delinsTT	p.Pro1097Leu	p.P1097L	ENST00000301067	NM_003482.3	1097	CCa/TTa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121438916	121438916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	307	1287	0	ENST00000257555.6:c.1817G>A	p.Gly606Asp	p.G606D	ENST00000257555		606	gGc/gAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133236043	133236043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	231	966	1	ENST00000320574.5:c.3113C>T	p.Ser1038Phe	p.S1038F	ENST00000320574	NM_006231.2	1038	tCc/tTc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30095735	30095735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	469	1010	0	ENST00000331968.5:c.1753C>T	p.Pro585Ser	p.P585S	ENST00000331968	NM_002742.2	585	Cct/Tct																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610068	81610068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	139	707	0	ENST00000298171.2:c.1666C>T	p.Pro556Ser	p.P556S	ENST00000298171	NM_000369.2	556	Cct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29670058	29670058	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	191	877	0	ENST00000358273.4:c.7094A>T	p.Asn2365Ile	p.N2365I	ENST00000358273	NM_001042492.2	2365	aAt/aTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29686029	29686029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	167	653	0	ENST00000358273.4:c.8156C>T	p.Ser2719Leu	p.S2719L	ENST00000358273	NM_001042492.2	2719	tCa/tTa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5206820	5206820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	242	1204	0	ENST00000357368.4:c.5812G>A	p.Glu1938Lys	p.E1938K	ENST00000357368	NM_002850.3	1938	Gag/Aag																																																																														
CIC	23152	MSKCC	GRCh37	19	42791269	42791269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	215	933	0	ENST00000575354.2:c.329C>T	p.Pro110Leu	p.P110L	ENST00000575354	NM_015125.3	110	cCc/cTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855907	45855907	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	222	961	0	ENST00000391945.4:c.1903G>A	p.Ala635Thr	p.A635T	ENST00000391945	NM_000400.3	635	Gcg/Acg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912408	50912408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	262	1078	1	ENST00000440232.2:c.1922C>T	p.Pro641Leu	p.P641L	ENST00000440232	NM_002691.3	641	cCc/cTc																																																																														
ALK	238	MSKCC	GRCh37	2	29420520	29420520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	160	734	0	ENST00000389048.3:c.3961G>A	p.Glu1321Lys	p.E1321K	ENST00000389048	NM_004304.4	1321	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	30143140	30143141	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	195	954	1	ENST00000389048.3:c.385_386delinsAA	p.Gly129Asn	p.G129N	ENST00000389048	NM_004304.4	129	GGc/AAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023718	31023718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	449	1051	3	ENST00000375687.4:c.3203G>A	p.Arg1068Gln	p.R1068Q	ENST00000375687	NM_015338.5	1068	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419977	41419977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	186	780	1	ENST00000373198.4:c.344C>T	p.Ser115Phe	p.S115F	ENST00000373198	NM_133170.3	115	tCc/tTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134977871	134977871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	148	708	0	ENST00000398015.3:c.2864G>A	p.Gly955Asp	p.G955D	ENST00000398015	NM_004441.4	955	gGc/gAc																																																																														
TET2	54790	MSKCC	GRCh37	4	106155491	106155491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	188	692	0	ENST00000380013.4:c.392G>A	p.Arg131Lys	p.R131K	ENST00000380013	NM_001127208.2	131	aGa/aAa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672626	30672626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	230	987	2	ENST00000376406.3:c.4334C>A	p.Pro1445His	p.P1445H	ENST00000376406	NM_014641.2	1445	cCt/cAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967993	93967993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	165	739	0	ENST00000369303.4:c.1934G>A	p.Gly645Asp	p.G645D	ENST00000369303	NM_004440.3	645	gGt/gAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268983	55268983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	278	1113	0	ENST00000275493.2:c.3049C>T	p.Leu1017Phe	p.L1017F	ENST00000275493	NM_005228.3	1017	Ctc/Ttc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845580	151845580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	274	1113	2	ENST00000262189.6:c.13432C>T	p.Arg4478Ter	p.R4478*	ENST00000262189	NM_170606.2	4478	Cga/Tga																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38194888	38194888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	269	1085	1	ENST00000317025.8:c.845C>T	p.Pro282Leu	p.P282L	ENST00000317025	NM_023034.1	282	cCt/cTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486022	8486022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	210	841	0	ENST00000356435.5:c.2795C>T	p.Ser932Leu	p.S932L	ENST00000356435		932	tCa/tTa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250277	110250277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	276	1084	0	ENST00000374672.4:c.398C>T	p.Ser133Leu	p.S133L	ENST00000374672	NM_004235.4	133	tCg/tTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44970643	44970643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	188	964	1	ENST00000377967.4:c.4193C>T	p.Ser1398Phe	p.S1398F	ENST00000377967	NM_021140.2	1398	tCc/tTc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222475	53222475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	300	1068	2	ENST00000375401.3:c.4357C>T	p.Arg1453Trp	p.R1453W	ENST00000375401	NM_004187.3	1453	Cgg/Tgg																																																																														
MED12	9968	MSKCC	GRCh37	X	70349664	70349664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	262	1074	0	ENST00000374080.3:c.3826G>A	p.Asp1276Asn	p.D1276N	ENST00000374080		1276	Gat/Aat																																																																														
ATRX	546	MSKCC	GRCh37	X	76972621	76972621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	262	1063	2	ENST00000373344.5:c.120G>A	p.Met40Ile	p.M40I	ENST00000373344	NM_000489.3	40	atG/atA																																																																														
XIAP	331	MSKCC	GRCh37	X	123020122	123020122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	231	1190	1	ENST00000355640.3:c.610G>A	p.Gly204Ser	p.G204S	ENST00000355640		204	Ggt/Agt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	211	701	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0021504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	74	732	0				ENST00000310581	NM_198253.2																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153332694	153332694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	42	780	0	ENST00000281708.4:c.262G>A	p.Asp88Asn	p.D88N	ENST00000281708	NM_033632.3	88	Gat/Aat																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865407	57865407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	121	1161	1	ENST00000228682.2:c.2884G>A	p.Gly962Ser	p.G962S	ENST00000228682	NM_005269.2	962	Ggt/Agt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332691	153332691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	37	788	0	ENST00000281708.4:c.265G>A	p.Glu89Lys	p.E89K	ENST00000281708	NM_033632.3	89	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332819	153332819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	117	858	1	ENST00000281708.4:c.137G>A	p.Arg46Lys	p.R46K	ENST00000281708	NM_033632.3	46	aGa/aAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069124	5069124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	98	732	0	ENST00000381652.3:c.1429C>T	p.Leu477Phe	p.L477F	ENST00000381652	NM_004972.3	477	Ctt/Ttt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410769	63410770	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	101	850	0	ENST00000330258.3:c.2397_2398delinsTT	p.Leu800Phe	p.L800F	ENST00000330258	NM_152424.3	799	aaCCtc/aaTTtc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	45	507	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	55	488	0				ENST00000310581	NM_198253.2																																																																																
PTPRS	5802	MSKCC	GRCh37	19	5244400	5244400	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79388082		P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	92	685	0	ENST00000357368.4:c.1082C>T	p.Ser361Phe	p.S361F	ENST00000357368	NM_002850.3	361	tCc/tTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819206	3819206	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139896431		P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	98	566	0	ENST00000262367.5:c.3029C>T	p.Pro1010Leu	p.P1010L	ENST00000262367	NM_004380.2	1010	cCt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579408	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTG	-			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1292	93	713	0	ENST00000269305.4:c.257_279delCACCAGCCCCCTCCTGGCCCCTG	p.Ala86ValfsTer55	p.A86Vfs*55	ENST00000269305	NM_001126112.2	86	gCACCAGCCCCCTCCTGGCCCCTG/g																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968326	2968326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	62	595	0	ENST00000396946.4:c.1660C>T	p.Pro554Ser	p.P554S	ENST00000396946	NM_032415.4	554	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317926	8317926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	18	463	0	ENST00000356435.5:c.5687C>T	p.Ser1896Phe	p.S1896F	ENST00000356435		1896	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343694	118343694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	47	464	0	ENST00000534358.1:c.1820A>G	p.Lys607Arg	p.K607R	ENST00000534358	NM_005933.3	607	aAg/aGg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022816	12022816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	50	459	0	ENST00000396373.4:c.922C>T	p.His308Tyr	p.H308Y	ENST00000396373	NM_001987.4	308	Cat/Tat																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15938123	15938123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	34	328	0	ENST00000268712.3:c.7091G>A	p.Arg2364Lys	p.R2364K	ENST00000268712	NM_006311.3	2364	aGg/aAg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207648	2207649	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1404	109	635	1	ENST00000398665.3:c.932_933delinsTT	p.Ser311Phe	p.S311F	ENST00000398665	NM_032482.2	311	tCC/tTT																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349589	15349589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1547	102	756	0	ENST00000263377.2:c.3985C>T	p.Arg1329Trp	p.R1329W	ENST00000263377	NM_058243.2	1329	Cgg/Tgg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954260	17954261	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	61	535	2	ENST00000458235.1:c.348_349delinsTT	p.Arg117Cys	p.R117C	ENST00000458235	NM_000215.3	116	caCCgc/caTTgc																																																																														
ALK	238	MSKCC	GRCh37	2	29451801	29451801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	56	715	0	ENST00000389048.3:c.2764G>A	p.Gly922Arg	p.G922R	ENST00000389048	NM_004304.4	922	Gga/Aga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488763	212488763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	22	457	0	ENST00000342788.4:c.2086G>A	p.Glu696Lys	p.E696K	ENST00000342788	NM_005235.2	696	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770621	40770621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	28	450	0	ENST00000373198.4:c.2761G>A	p.Ala921Thr	p.A921T	ENST00000373198	NM_133170.3	921	Gct/Act																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345944	152345944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	48	501	0	ENST00000359321.1:c.626C>T	p.Pro209Leu	p.P209L	ENST00000359321	NM_005431.1	209	cCt/cTt																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194601	29194601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1619	108	805	3	ENST00000240100.2:c.1127C>T	p.Ser376Leu	p.S376L	ENST00000240100	NM_001394.6	376	tCg/tTg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207522	29207522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	68	425	0	ENST00000240100.2:c.274G>A	p.Glu92Lys	p.E92K	ENST00000240100	NM_001394.6	92	Gag/Aag																																																																														
RAD21	5885	MSKCC	GRCh37	8	117870624	117870624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	18	489	1	ENST00000297338.2:c.448G>A	p.Gly150Arg	p.G150R	ENST00000297338	NM_006265.2	150	Ggg/Agg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923058	39923058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	63	621	2	ENST00000378444.4:c.3650G>A	p.Arg1217Gln	p.R1217Q	ENST00000378444	NM_001123385.1	1217	cGa/cAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	244	573	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	34	496	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	49030485	49030485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	62	498	0	ENST00000267163.4:c.1960G>A	p.Val654Met	p.V654M	ENST00000267163	NM_000321.2	654	Gtg/Atg																																																																														
RB1	5925	MSKCC	GRCh37	13	49047494	49047494	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0021737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	74	581	0	ENST00000267163.4:c.2490-2A>G		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
RB1	5925	MSKCC	GRCh37	13	49050953	49050953	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	72	545	0	ENST00000267163.4:c.2637T>G	p.Ile879Met	p.I879M	ENST00000267163	NM_000321.2	879	atT/atG																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40685704	40685704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	73	691	0	ENST00000249776.8:c.857G>A	p.Arg286Lys	p.R286K	ENST00000249776	NM_033286.3	286	aGa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	73	327	0				ENST00000310581	NM_198253.2																																																																																
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	289	552	0	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517879	187517879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	81	520	0	ENST00000441802.2:c.12815C>T	p.Ser4272Phe	p.S4272F	ENST00000441802	NM_005245.3	4272	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246629	46246629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	62	226	0	ENST00000334344.6:c.4723C>T	p.Gln1575Ter	p.Q1575*	ENST00000334344	NM_152641.2	1575	Cag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221981	1221981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	326	654	0	ENST00000326873.7:c.896C>T	p.Ser299Phe	p.S299F	ENST00000326873	NM_000455.4	299	tCc/tTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954916	2954916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	178	559	2	ENST00000396946.4:c.2794C>T	p.Arg932Trp	p.R932W	ENST00000396946	NM_032415.4	932	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976769	2976769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	156	697	0	ENST00000396946.4:c.1243G>A	p.Asp415Asn	p.D415N	ENST00000396946	NM_032415.4	415	Gac/Aac																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858164	152858164	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	178	339	0	ENST00000406277.2:c.451C>T	p.Gln151Ter	p.Q151*	ENST00000406277	NM_152274.4	151	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11293456	11293456	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	164	584	1	ENST00000361445.4:c.2420A>G	p.Gln807Arg	p.Q807R	ENST00000361445	NM_004958.3	807	cAg/cGg																																																																														
STK40	83931	MSKCC	GRCh37	1	36814402	36814402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	186	590	0	ENST00000373129.3:c.638C>G	p.Thr213Ser	p.T213S	ENST00000373129	NM_032017.1	213	aCc/aGc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206658603	206658603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	110	546	0	ENST00000367120.3:c.1576G>A	p.Glu526Lys	p.E526K	ENST00000367120	NM_014002.3	526	Gag/Aag																																																																														
TET1	80312	MSKCC	GRCh37	10	70404737	70404737	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	125	544	0	ENST00000373644.4:c.2251T>A	p.Leu751Met	p.L751M	ENST00000373644	NM_030625.2	751	Ttg/Atg																																																																														
CBL	867	MSKCC	GRCh37	11	119149260	119149260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	179	589	0	ENST00000264033.4:c.1268T>C	p.Ile423Thr	p.I423T	ENST00000264033	NM_005188.3	423	aTt/aCt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435583	18435583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	97	321	0	ENST00000266497.5:c.568G>A	p.Glu190Lys	p.E190K	ENST00000266497		190	Gaa/Aaa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21624511	21624512	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	158	594	1	ENST00000421138.2:c.1517_1518delinsCT	p.Leu506Pro	p.L506P	ENST00000421138		506	cTG/cCT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211635	46211639	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTT	ACTTT	-			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	81	365	0	ENST00000334344.6:c.604_608del	p.Leu202ThrfsTer3	p.L202Tfs*3	ENST00000334344	NM_152641.2	201	ACTTTa/a																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425823	49425824	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	95	483	0	ENST00000301067.7:c.12662_12664dup	p.Gln4221dup	p.Q4221dup	ENST00000301067	NM_003482.3	4221	cta/cAGCta																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528243	103528243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199925057		P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	90	285	0	ENST00000355739.4:c.3551G>A	p.Arg1184Lys	p.R1184K	ENST00000355739	NM_000123.3	1184	aGg/aAg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222318	2222318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	183	580	0	ENST00000326181.6:c.602C>A	p.Pro201His	p.P201H	ENST00000326181	NM_032271.2	201	cCc/cAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639612	3639612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	168	751	1	ENST00000294008.3:c.4027C>T	p.Pro1343Ser	p.P1343S	ENST00000294008	NM_032444.2	1343	Cct/Tct																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639874	3639874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	175	548	0	ENST00000294008.3:c.3765G>A	p.Trp1255Ter	p.W1255*	ENST00000294008	NM_032444.2	1255	tgG/tgA																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	195	775	0	ENST00000294008.3:c.1406C>T	p.Pro469Leu	p.P469L	ENST00000294008	NM_032444.2	469	cCa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857146	9857146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	88	388	1	ENST00000330684.3:c.4255C>T	p.His1419Tyr	p.H1419Y	ENST00000330684	NM_001134407.1	1419	Cac/Tac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984937	9984937	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	113	524	0	ENST00000330684.3:c.1028G>A	p.Trp343Ter	p.W343*	ENST00000330684	NM_001134407.1	343	tGg/tAg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655398	67655398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	164	635	0	ENST00000264010.4:c.1261A>G	p.Thr421Ala	p.T421A	ENST00000264010	NM_006565.3	421	Acc/Gcc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346770	89346771	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	73	373	3	ENST00000301030.4:c.6179_6180delinsTT	p.Ser2060Phe	p.S2060F	ENST00000301030	NM_001256183.1	2060	tCC/tTT																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428351	33428351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	177	583	0	ENST00000335858.7:c.436G>T	p.Gly146Trp	p.G146W	ENST00000335858	NM_133629.2	146	Ggg/Tgg																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33446625	33446625	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	162	497	0	ENST00000335858.7:c.8T>G	p.Val3Gly	p.V3G	ENST00000335858	NM_133629.2	3	gTg/gGg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370313	40370313	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	373	721	0	ENST00000293328.3:c.1025T>G	p.Leu342Arg	p.L342R	ENST00000293328	NM_012448.3	342	cTg/cGg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211776	2211776	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	305	759	2	ENST00000398665.3:c.1492T>C	p.Phe498Leu	p.F498L	ENST00000398665	NM_032482.2	498	Ttc/Ctc																																																																														
INSR	3643	MSKCC	GRCh37	19	7168101	7168101	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	97	415	0	ENST00000302850.5:c.1488A>T	p.Glu496Asp	p.E496D	ENST00000302850	NM_000208.2	496	gaA/gaT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265051	10265051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	194	562	1	ENST00000340748.4:c.1889C>T	p.Thr630Ile	p.T630I	ENST00000340748		630	aCt/aTt																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17389727	17389727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	183	701	0	ENST00000359435.4:c.860C>T	p.Pro287Leu	p.P287L	ENST00000359435	NM_001033549.1	287	cCa/cTa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224710	36224710	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	194	713	0	ENST00000222270.7:c.7097del	p.Pro2366LeufsTer73	p.P2366Lfs*73	ENST00000222270	NM_014727.1	2366	Cct/ct																																																																														
ALK	238	MSKCC	GRCh37	2	29445433	29445433	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	332	606	2	ENST00000389048.3:c.3400C>T	p.Gln1134Ter	p.Q1134*	ENST00000389048	NM_004304.4	1134	Cag/Tag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033489	48033490	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	219	567	2	ENST00000234420.5:c.3793_3794delinsAA	p.Gly1265Lys	p.G1265K	ENST00000234420	NM_000179.2	1265	GGa/AAa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024024	31024024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	163	545	0	ENST00000375687.4:c.3509T>C	p.Leu1170Ser	p.L1170S	ENST00000375687	NM_015338.5	1170	tTa/tCa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183667	10183667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	177	572	2	ENST00000256474.2:c.136G>A	p.Glu46Lys	p.E46K	ENST00000256474	NM_000551.3	46	Gag/Aag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713138	30713138	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	70	304	0	ENST00000359013.4:c.538A>G	p.Thr180Ala	p.T180A	ENST00000359013	NM_001024847.2	180	Acc/Gcc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185169101	185169101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	157	531	0	ENST00000265026.3:c.1196C>T	p.Ser399Phe	p.S399F	ENST00000265026	NM_004721.4	399	tCt/tTt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191506	185191506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	189	649	0	ENST00000265026.3:c.2387G>A	p.Gly796Asp	p.G796D	ENST00000265026	NM_004721.4	796	gGc/gAc																																																																														
TP63	8626	MSKCC	GRCh37	3	189526106	189526106	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	146	548	0	ENST00000264731.3:c.370A>T	p.Ile124Phe	p.I124F	ENST00000264731	NM_003722.4	124	Att/Ttt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803678	1803678	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	184	716	1	ENST00000260795.2:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000260795		286	Cag/Tag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902481	1902481	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	136	551	0	ENST00000382891.5:c.100A>T	p.Lys34Ter	p.K34*	ENST00000382891	NM_133335.3	34	Aag/Tag																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748279	41748279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	136	596	0	ENST00000226382.2:c.490G>T	p.Ala164Ser	p.A164S	ENST00000226382	NM_003924.3	164	Gcg/Tcg																																																																														
KDR	3791	MSKCC	GRCh37	4	55968619	55968619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	154	592	0	ENST00000263923.4:c.2044G>A	p.Glu682Lys	p.E682K	ENST00000263923	NM_002253.2	682	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106156535	106156535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	103	393	0	ENST00000380013.4:c.1436G>A	p.Arg479Lys	p.R479K	ENST00000380013	NM_001127208.2	479	aGg/aAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517878	187517879	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	81	517	3	ENST00000441802.2:c.12815_12816delinsTT	p.Ser4272Phe	p.S4272F	ENST00000441802	NM_005245.3	4272	tCC/tTT																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754325	57754325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	148	465	0	ENST00000274289.3:c.526G>A	p.Val176Met	p.V176M	ENST00000274289	NM_006622.3	176	Gtg/Atg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678001	117678001	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62430836		P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	128	468	0	ENST00000368508.3:c.3932G>A	p.Arg1311Gln	p.R1311Q	ENST00000368508	NM_002944.2	1311	cGa/cAa																																																																														
PARK2	0	MSKCC	GRCh37	6	162683766	162683766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	112	444	0	ENST00000366898.1:c.203A>G	p.His68Arg	p.H68R	ENST00000366898	NM_004562.2	68	cAc/cGc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468170	50468170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	173	448	0	ENST00000331340.3:c.1405G>A	p.Val469Met	p.V469M	ENST00000331340	NM_006060.4	469	Gtg/Atg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371770	55371770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	80	238	0	ENST00000297316.4:c.460G>A	p.Gly154Ser	p.G154S	ENST00000297316	NM_022454.3	154	Ggc/Agc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68981302	68981302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	108	405	0	ENST00000288368.4:c.1374G>C	p.Met458Ile	p.M458I	ENST00000288368	NM_024870.2	458	atG/atC																																																																														
PREX2	80243	MSKCC	GRCh37	8	69009279	69009279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	137	479	0	ENST00000288368.4:c.2396C>T	p.Ala799Val	p.A799V	ENST00000288368	NM_024870.2	799	gCc/gTc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981782	70981782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141129543		P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	188	699	0	ENST00000276594.2:c.314C>T	p.Pro105Leu	p.P105L	ENST00000276594	NM_024504.3	105	cCc/cTc																																																																														
TEK	7010	MSKCC	GRCh37	9	27173262	27173262	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	165	684	0	ENST00000380036.4:c.803G>C	p.Cys268Ser	p.C268S	ENST00000380036	NM_000459.3	268	tGc/tCc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938418	44938418	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	128	276	0	ENST00000377967.4:c.2966T>G	p.Leu989Trp	p.L989W	ENST00000377967	NM_021140.2	989	tTg/tGg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223539	53223539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	122	189	1	ENST00000375401.3:c.3820G>A	p.Glu1274Lys	p.E1274K	ENST00000375401	NM_004187.3	1274	Gag/Aag																																																																														
RECQL	5965	MSKCC	GRCh37	12	21624512	21624512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	158	582	0	ENST00000421138.2:c.1517T>C	p.Leu506Pro	p.L506P	ENST00000421138		506	cTg/cCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	494	797	0				ENST00000310581	NM_198253.2																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50450300	50450300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	387	845	1	ENST00000331340.3:c.484C>T	p.Arg162Trp	p.R162W	ENST00000331340	NM_006060.4	162	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	105	630	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244913	123244913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	480	1201	0	ENST00000358487.5:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000358487	NM_000141.4	731	Gaa/Aaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9560859	9560859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	318	737	0	ENST00000353224.5:c.923C>T	p.Pro308Leu	p.P308L	ENST00000353224	NM_177990.2	308	cCc/cTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716366	18716366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	128	579	0	ENST00000266497.5:c.3713C>T	p.Ser1238Leu	p.S1238L	ENST00000266497		1238	tCa/tTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	618	1101	0	ENST00000304494.5:c.457G>C	p.Asp153His	p.D153H	ENST00000304494	NM_000077.4	153	Gac/Cac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	618	1101	0	ENST00000304494.5:c.457G>C	p.Asp153His	p.D153H	ENST00000304494	NM_000077.4	153	Gac/Cac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	618	1101	0	ENST00000304494.5:c.457G>C	p.Asp153His	p.D153H	ENST00000304494	NM_000077.4	153	Gac/Cac																																																																														
EP300	2033	MSKCC	GRCh37	22	41564491	41564491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	219	555	0	ENST00000263253.7:c.3913C>T	p.Arg1305Cys	p.R1305C	ENST00000263253	NM_001429.3	1305	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106612	27106612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	477	828	0	ENST00000324856.7:c.6223C>T	p.Pro2075Ser	p.P2075S	ENST00000324856	NM_006015.4	2075	Cca/Tca																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46738376	46738376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	324	738	0	ENST00000371975.4:c.1277G>A	p.Arg426Lys	p.R426K	ENST00000371975	NM_003579.3	426	aGg/aAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375593	118375593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	183	453	1	ENST00000534358.1:c.8986C>T	p.His2996Tyr	p.H2996Y	ENST00000534358	NM_005933.3	2996	Cat/Tat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231185	46231186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAAA			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	56	529	0	ENST00000334344.6:c.1106_1107insAAAT	p.Phe369LeufsTer20	p.F369Lfs*20	ENST00000334344	NM_152641.2	369	ttt/tTAAAtt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678341	88678341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	294	843	2	ENST00000360948.2:c.1195C>T	p.Pro399Ser	p.P399S	ENST00000360948	NM_001012338.2	399	Ccc/Tcc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225923	2225923	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	449	986	0	ENST00000326181.6:c.1715T>C	p.Ile572Thr	p.I572T	ENST00000326181	NM_032271.2	572	aTt/aCt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828989	72828989	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	409	938	0	ENST00000268489.5:c.7592A>G	p.Gln2531Arg	p.Q2531R	ENST00000268489	NM_006885.3	2531	cAg/cGg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805378	46805378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	511	1042	1	ENST00000290295.7:c.578C>T	p.Pro193Leu	p.P193L	ENST00000290295	NM_006361.5	193	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285171	15285171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	624	1112	2	ENST00000263388.2:c.4444G>A	p.Gly1482Ser	p.G1482S	ENST00000263388	NM_000435.2	1482	Ggc/Agc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350292	15350292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	366	869	0	ENST00000263377.2:c.3487C>G	p.Arg1163Gly	p.R1163G	ENST00000263377	NM_058243.2	1163	Cgg/Ggg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353921	15353921	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	336	585	2	ENST00000263377.2:c.2959C>T	p.Gln987Ter	p.Q987*	ENST00000263377	NM_058243.2	987	Cag/Tag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945747	17945747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	500	926	0	ENST00000458235.1:c.2113G>A	p.Glu705Lys	p.E705K	ENST00000458235	NM_000215.3	705	Gaa/Aaa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52725407	52725407	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	424	872	0	ENST00000322088.6:c.1574T>C	p.Val525Ala	p.V525A	ENST00000322088	NM_014225.5	525	gTt/gCt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286734	212286734	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	70	504	0	ENST00000342788.4:c.2962C>T	p.Gln988Ter	p.Q988*	ENST00000342788	NM_005235.2	988	Cag/Tag																																																																														
PAK7	0	MSKCC	GRCh37	20	9560860	9560860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	314	740	0	ENST00000353224.5:c.922C>T	p.Pro308Ser	p.P308S	ENST00000353224	NM_177990.2	308	Ccc/Tcc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134885818	134885818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145366861		P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	327	679	2	ENST00000398015.3:c.1729G>A	p.Asp577Asn	p.D577N	ENST00000398015	NM_004441.4	577	Gat/Aat																																																																														
KDR	3791	MSKCC	GRCh37	4	55946319	55946319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	179	385	0	ENST00000263923.4:c.3860C>T	p.Pro1287Leu	p.P1287L	ENST00000263923	NM_002253.2	1287	cCc/cTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149452948	149452948	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	408	825	0	ENST00000286301.3:c.998G>C	p.Gly333Ala	p.G333A	ENST00000286301	NM_005211.3	333	gGt/gCt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969129	93969129	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	128	621	0	ENST00000369303.4:c.1867C>T	p.Gln623Ter	p.Q623*	ENST00000369303	NM_004440.3	623	Caa/Taa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120405	94120405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	127	437	0	ENST00000369303.4:c.646C>T	p.Pro216Ser	p.P216S	ENST00000369303	NM_004440.3	216	Cca/Tca																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459426	50459426	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	79	352	1	ENST00000331340.3:c.716-1G>T		p.X239_splice	ENST00000331340	NM_006060.4	239																																																																															
HGF	3082	MSKCC	GRCh37	7	81355325	81355325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	122	439	0	ENST00000222390.5:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000222390	NM_000601.4	350	cGa/cAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140477800	140477800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	91	794	1	ENST00000288602.6:c.1508G>A	p.Gly503Glu	p.G503E	ENST00000288602	NM_004333.4	503	gGa/gAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5044431	5044431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	127	786	1	ENST00000381652.3:c.379G>A	p.Gly127Ser	p.G127S	ENST00000381652	NM_004972.3	127	Ggc/Agc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404535	8404535	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	76	339	0	ENST00000356435.5:c.4210+2T>G		p.X1404_splice	ENST00000356435		1404																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504363	8504363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	246	788	0	ENST00000356435.5:c.1720G>A	p.Gly574Arg	p.G574R	ENST00000356435		574	Gga/Aga																																																																														
TEK	7010	MSKCC	GRCh37	9	27169504	27169504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	377	843	0	ENST00000380036.4:c.505G>A	p.Glu169Lys	p.E169K	ENST00000380036	NM_000459.3	169	Gaa/Aaa																																																																														
ABL1	25	MSKCC	GRCh37	9	133760006	133760006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	448	1077	2	ENST00000318560.5:c.2329C>T	p.Arg777Ter	p.R777*	ENST00000318560	NM_005157.4	777	Cga/Tga																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	376	818	1	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20159746	20159746	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	308	293	0	ENST00000379607.5:c.13A>G	p.Lys5Glu	p.K5E	ENST00000379607	NM_001412.3	5	Aaa/Gaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176469	123176469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	243	224	0	ENST00000218089.9:c.436C>T	p.Arg146Ter	p.R146*	ENST00000218089	NM_001042749.1	146	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108165788	108165788	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0021844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	226	453	0	ENST00000278616.4:c.4909+2T>C		p.X1637_splice	ENST00000278616	NM_000051.3	1637																																																																															
BAP1	8314	MSKCC	GRCh37	3	52438512	52438537	+	stop_gained	Nonsense_Mutation	DEL	CCTCATAGTCATCCTCATCATCTGAG	CCTCATAGTCATCCTCATCATCTGAG	AC			P-0021844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	272	726	3	ENST00000460680.1:c.1182_1207delinsGT	p.Tyr394_Asp403delinsTer	p.Y394_D403delins*	ENST00000460680	NM_004656.3	394	taCTCAGATGATGAGGATGACTATGAGGat/taGTat																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	347	810	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	335	685	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	120	411	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356251	66356251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	110	787	0	ENST00000273854.3:c.1246C>T	p.Pro416Ser	p.P416S	ENST00000273854	NM_004439.5	416	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0021934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	72	291	1				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108186812	108186812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	158	677	1	ENST00000278616.4:c.6170C>T	p.Ser2057Leu	p.S2057L	ENST00000278616	NM_000051.3	2057	tCa/tTa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727403	66727441	+	inframe_deletion	In_Frame_Del	DEL	TAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCT	TAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCT	-			P-0021934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	101	481	0	ENST00000307102.5:c.120_158delAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCTT	p.Glu41_Phe53del	p.E41_F53del	ENST00000307102	NM_002755.3	40	cTAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCTtt/ctt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024434	16024434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	139	466	0	ENST00000268712.3:c.1784C>T	p.Ala595Val	p.A595V	ENST00000268712	NM_006311.3	595	gCt/gTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845704	151845705	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	139	715	2	ENST00000262189.6:c.13307_13308delCCinsTT	p.Ser4436Phe	p.S4436F	ENST00000262189	NM_170606.2	4436	tCC/tTT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	126	975	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	33	225	1				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9858517	9858517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	24	797	3	ENST00000330684.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000330684	NM_001134407.1	962	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81381541	81381541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	21	397	1	ENST00000222390.5:c.520G>A	p.Glu174Lys	p.E174K	ENST00000222390	NM_000601.4	174	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518111	8518111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	35	621	0	ENST00000356435.5:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000356435		427	cGa/cAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561450	9561450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	99	738	0	ENST00000353224.5:c.332G>A	p.Gly111Glu	p.G111E	ENST00000353224	NM_177990.2	111	gGa/gAa																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313189	30313189	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139792204		P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	33	870	1	ENST00000262643.3:c.883C>T	p.Pro295Ser	p.P295S	ENST00000262643	NM_001238.2	295	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400190	41400190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	31	613	0	ENST00000373198.4:c.569G>A	p.Arg190Lys	p.R190K	ENST00000373198	NM_133170.3	190	aGa/aAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29576033	29576033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	29	717	0	ENST00000358273.4:c.4006C>T	p.Gln1336Ter	p.Q1336*	ENST00000358273	NM_001042492.2	1336	Cag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	29917782	29917782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	106	1030	2	ENST00000389048.3:c.886G>A	p.Glu296Lys	p.E296K	ENST00000389048	NM_004304.4	296	Gag/Aag																																																																														
CYLD	1540	MSKCC	GRCh37	16	50826577	50826577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	20	504	0	ENST00000398568.2:c.2302C>T	p.Pro768Ser	p.P768S	ENST00000398568	NM_001042412.1	768	Cct/Tct																																																																														
ATR	545	MSKCC	GRCh37	3	142215915	142215915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	19	631	0	ENST00000350721.4:c.5678C>T	p.Ser1893Phe	p.S1893F	ENST00000350721	NM_001184.3	1893	tCc/tTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195717	123195717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	28	866	1	ENST00000218089.9:c.1631G>A	p.Gly544Glu	p.G544E	ENST00000218089	NM_001042749.1	544	gGa/gAa																																																																														
STK40	83931	MSKCC	GRCh37	1	36809725	36809725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	51	694	0	ENST00000373129.3:c.880C>T	p.Pro294Ser	p.P294S	ENST00000373129	NM_032017.1	294	Cct/Tct																																																																														
LMO1	4004	MSKCC	GRCh37	11	8252010	8252010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	64	885	0	ENST00000335790.3:c.67G>A	p.Gly23Ser	p.G23S	ENST00000335790	NM_002315.2	23	Ggc/Agc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348727	118348727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	22	427	0	ENST00000534358.1:c.3380C>T	p.Pro1127Leu	p.P1127L	ENST00000534358	NM_005933.3	1127	cCa/cTa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608236	28608236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	20	813	1	ENST00000241453.7:c.1820G>A	p.Arg607Lys	p.R607K	ENST00000241453	NM_004119.2	607	aGa/aAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28913316	28913316	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	49	904	0	ENST00000282397.4:c.2477G>C	p.Arg826Thr	p.R826T	ENST00000282397	NM_002019.4	826	aGa/aCa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43738764	43738764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	18	679	1	ENST00000382044.4:c.2861C>T	p.Thr954Ile	p.T954I	ENST00000382044	NM_001141980.1	954	aCc/aTc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372061	45372061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	27	724	0	ENST00000262160.6:c.1108C>T	p.Pro370Ser	p.P370S	ENST00000262160	NM_005901.5	370	Cct/Tct																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955113	17955114	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	70	1034	1	ENST00000458235.1:c.113_114delCCinsTT	p.Pro38Leu	p.P38L	ENST00000458235	NM_000215.3	38	cCC/cTT																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25536841	25536841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	81	504	0	ENST00000264709.3:c.13C>T	p.Pro5Ser	p.P5S	ENST00000264709	NM_175629.2	5	Ccc/Tcc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274635	198274635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	101	782	0	ENST00000335508.6:c.763G>A	p.Asp255Asn	p.D255N	ENST00000335508	NM_012433.2	255	Gat/Aat																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961514	54961514	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	42	702	0	ENST00000312783.6:c.118A>T	p.Asn40Tyr	p.N40Y	ENST00000312783	NM_198436.1	40	Aat/Tat																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171753	36171759	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTTGTAT	CTTGTAT	-			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	25	469	0	ENST00000300305.3:c.806_812delATACAAG	p.Asp269GlyfsTer40	p.D269Gfs*40	ENST00000300305		269	gATACAAGg/gg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421364	12421364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	34	1042	2	ENST00000287820.6:c.244C>T	p.Pro82Ser	p.P82S	ENST00000287820	NM_015869.4	82	Cca/Tca																																																																														
ATR	545	MSKCC	GRCh37	3	142215312	142215312	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	64	685	0	ENST00000350721.4:c.5789T>G	p.Val1930Gly	p.V1930G	ENST00000350721	NM_001184.3	1930	gTa/gGa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677962	117677962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	30	802	0	ENST00000368508.3:c.3971G>A	p.Arg1324Lys	p.R1324K	ENST00000368508	NM_002944.2	1324	aGg/aAg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528493	157528494	+	missense_variant	Missense_Mutation	DNP	AC	AC	CA			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	44	830	0	ENST00000346085.5:c.6218_6219delACinsCA	p.Asn2073Thr	p.N2073T	ENST00000346085	NM_020732.3	2073	aAC/aCA																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958220	2958220	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	68	737	0	ENST00000396946.4:c.2512G>C	p.Ala838Pro	p.A838P	ENST00000396946	NM_032415.4	838	Gcc/Ccc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962806	2962806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	94	861	0	ENST00000396946.4:c.2102C>T	p.Ala701Val	p.A701V	ENST00000396946	NM_032415.4	701	gCc/gTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984157	2984157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	42	425	0	ENST00000396946.4:c.373G>A	p.Glu125Lys	p.E125K	ENST00000396946	NM_032415.4	125	Gag/Aag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985549	2985549	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	47	813	2	ENST00000396946.4:c.262T>C	p.Tyr88His	p.Y88H	ENST00000396946	NM_032415.4	88	Tat/Cat																																																																														
MET	4233	MSKCC	GRCh37	7	116339863	116339863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	13	720	0	ENST00000397752.3:c.725G>A	p.Arg242Lys	p.R242K	ENST00000397752	NM_000245.2	242	aGa/aAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27212866	27212866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	98	858	1	ENST00000380036.4:c.2848C>T	p.Arg950Trp	p.R950W	ENST00000380036	NM_000459.3	950	Cgg/Tgg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211496	98211496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	78	655	0	ENST00000331920.6:c.3659C>T	p.Ser1220Phe	p.S1220F	ENST00000331920	NM_000264.3	1220	tCc/tTc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44870260	44870260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	25	769	0	ENST00000377967.4:c.439C>T	p.Gln147Ter	p.Q147*	ENST00000377967	NM_021140.2	147	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	77	489	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	278	689	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892299	9892299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	71	439	0	ENST00000330684.3:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000330684	NM_001134407.1	731	Gat/Aat																																																																														
GNA11	2767	MSKCC	GRCh37	19	3115012	3115012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	177	924	3	ENST00000078429.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000078429	NM_002067.2	183	Cgc/Tgc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125764	47125764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	66	446	0	ENST00000409792.3:c.5506C>T	p.Pro1836Ser	p.P1836S	ENST00000409792	NM_014159.6	1836	Ccg/Tcg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211536	46211536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	60	430	0	ENST00000334344.6:c.502G>A	p.Gly168Arg	p.G168R	ENST00000334344	NM_152641.2	168	Gga/Aga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956676	93956676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	109	413	0	ENST00000369303.4:c.2560C>T	p.Arg854Cys	p.R854C	ENST00000369303	NM_004440.3	854	Cgt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244778	46244778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	103	655	3	ENST00000334344.6:c.2872C>T	p.Gln958Ter	p.Q958*	ENST00000334344	NM_152641.2	958	Cag/Tag																																																																														
PAK7	0	MSKCC	GRCh37	20	9561430	9561430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	107	643	1	ENST00000353224.5:c.352G>A	p.Gly118Ser	p.G118S	ENST00000353224	NM_177990.2	118	Ggc/Agc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472433	88472433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	101	545	0	ENST00000360948.2:c.2122G>A	p.Asp708Asn	p.D708N	ENST00000360948	NM_001012338.2	708	Gat/Aat																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946418	2946418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	315	712	0	ENST00000396946.4:c.3319G>A	p.Glu1107Lys	p.E1107K	ENST00000396946	NM_032415.4	1107	Gag/Aag																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675119	40675119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	111	705	2	ENST00000249776.8:c.83C>T	p.Pro28Leu	p.P28L	ENST00000249776	NM_033286.3	28	cCg/cTg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725021	162725021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	154	616	0	ENST00000367921.3:c.493C>T	p.Arg165Trp	p.R165W	ENST00000367921	NM_006182.2	165	Cgg/Tgg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123256051	123256051	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	133	575	1	ENST00000358487.5:c.1858C>T	p.Gln620Ter	p.Q620*	ENST00000358487	NM_000141.4	620	Caa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	406233	406233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	39	500	0	ENST00000399788.2:c.4208C>T	p.Ser1403Phe	p.S1403F	ENST00000399788	NM_001042603.1	1403	tCt/tTt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	495088	495088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	128	489	0	ENST00000399788.2:c.218G>A	p.Arg73Lys	p.R73K	ENST00000399788	NM_001042603.1	73	aGa/aAa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888221	112888221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	105	606	1	ENST00000351677.2:c.237G>T	p.Gln79His	p.Q79H	ENST00000351677	NM_002834.3	79	caG/caT																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610250	81610251	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	137	487	2	ENST00000298171.2:c.1848_1849delinsAT	p.Asp617Tyr	p.D617Y	ENST00000298171	NM_000369.2	616	ggGGac/ggATac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858298	9858298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	89	440	0	ENST00000330684.3:c.3103G>A	p.Asp1035Asn	p.D1035N	ENST00000330684	NM_001134407.1	1035	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984908	9984908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	168	628	0	ENST00000330684.3:c.1057G>A	p.Glu353Lys	p.E353K	ENST00000330684	NM_001134407.1	353	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578392	7578409	+	inframe_deletion	In_Frame_Del	DEL	CATGGTGGGGGCAGCGCC	CATGGTGGGGGCAGCGCC	-			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	214	602	2	ENST00000269305.4:c.521_538del	p.Arg174_Glu180delinsLys	p.R174_E180delinsK	ENST00000269305	NM_001126112.2	174	aGGCGCTGCCCCCACCATGag/aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29541553	29541553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	106	492	0	ENST00000358273.4:c.1477C>T	p.Leu493Phe	p.L493F	ENST00000358273	NM_001042492.2	493	Ctc/Ttc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1646376	1646377	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	235	695	3	ENST00000344749.5:c.122_123delinsTT	p.Ala41Val	p.A41V	ENST00000344749	NM_001136139.2	41	gCC/gTT																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918082	50918082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	105	729	0	ENST00000440232.2:c.2399C>T	p.Pro800Leu	p.P800L	ENST00000440232	NM_002691.3	800	cCa/cTa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965104	25965104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	213	561	1	ENST00000435504.4:c.4102C>T	p.Pro1368Ser	p.P1368S	ENST00000435504		1368	Cct/Tct																																																																														
ALK	238	MSKCC	GRCh37	2	29551240	29551240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55706535		P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	218	659	0	ENST00000389048.3:c.1390G>A	p.Gly464Arg	p.G464R	ENST00000389048	NM_004304.4	464	Gga/Aga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710637	40710637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	231	586	0	ENST00000373198.4:c.4214G>A	p.Gly1405Glu	p.G1405E	ENST00000373198	NM_133170.3	1405	gGa/gAa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449457	149449457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	110	524	1	ENST00000286301.3:c.1489G>A	p.Ala497Thr	p.A497T	ENST00000286301	NM_005211.3	497	Gcc/Acc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517766	176517766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	99	722	0	ENST00000292408.4:c.376G>A	p.Asp126Asn	p.D126N	ENST00000292408	NM_213647.1	126	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188202	32188202	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	177	604	0	ENST00000375023.3:c.1139T>C	p.Leu380Pro	p.L380P	ENST00000375023	NM_004557.3	380	cTc/cCc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157525064	157525065	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	45	460	2	ENST00000346085.5:c.4959_4960delinsAA	p.Trp1653_Ala1654delinsTer	p.W1653_A1654delins*	ENST00000346085	NM_020732.3	1653	tgGGct/tgAAct																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509569	106509569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	154	557	0	ENST00000359195.3:c.1563C>G	p.Asp521Glu	p.D521E	ENST00000359195	NM_002649.2	521	gaC/gaG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878089	151878089	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	169	493	0	ENST00000262189.6:c.6856A>T	p.Thr2286Ser	p.T2286S	ENST00000262189	NM_170606.2	2286	Aca/Tca																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002812	69002812	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	85	271	1	ENST00000288368.4:c.2114-2A>G		p.X705_splice	ENST00000288368	NM_024870.2	705																																																																															
XIAP	331	MSKCC	GRCh37	X	123019961	123019961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	136	320	0	ENST00000355640.3:c.449C>T	p.Ser150Leu	p.S150L	ENST00000355640		150	tCa/tTa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237622	16237622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	131	643	0	ENST00000375759.3:c.1069C>T	p.His357Tyr	p.H357Y	ENST00000375759	NM_015001.2	357	Cat/Tat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257447	16257447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	153	764	0	ENST00000375759.3:c.4712G>A	p.Ser1571Asn	p.S1571N	ENST00000375759	NM_015001.2	1571	aGc/aAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259635	16259636	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	113	744	1	ENST00000375759.3:c.6900_6901delinsGA	p.Ala2301Thr	p.A2301T	ENST00000375759	NM_015001.2	2300	gaAGcc/gaGAcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101168	27101168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	202	873	1	ENST00000324856.7:c.4450C>T	p.Pro1484Ser	p.P1484S	ENST00000324856	NM_006015.4	1484	Ccc/Tcc																																																																														
MPL	4352	MSKCC	GRCh37	1	43804956	43804956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	101	486	2	ENST00000372470.3:c.406C>T	p.Pro136Ser	p.P136S	ENST00000372470	NM_005373.2	136	Ccc/Tcc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	71873232	71873232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	96	611	0	ENST00000357731.5:c.962G>A	p.Gly321Glu	p.G321E	ENST00000357731	NM_173808.2	321	gGa/gAa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72241933	72241933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	103	615	0	ENST00000357731.5:c.457G>A	p.Gly153Arg	p.G153R	ENST00000357731	NM_173808.2	153	Gga/Aga																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115280145	115280145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	144	571	0	ENST00000438362.2:c.487C>T	p.Pro163Ser	p.P163S	ENST00000438362	NM_001242891.1	163	Cca/Tca																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458225	120458225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	181	911	0	ENST00000256646.2:c.7120C>T	p.His2374Tyr	p.H2374Y	ENST00000256646	NM_024408.3	2374	Cat/Tat																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120478110	120478110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	170	676	0	ENST00000256646.2:c.3640C>T	p.Pro1214Ser	p.P1214S	ENST00000256646	NM_024408.3	1214	Cca/Tca																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246493797	246493797	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	121	686	1	ENST00000388985.4:c.379del	p.Tyr127MetfsTer10	p.Y127Mfs*10	ENST00000388985		127	Tat/at																																																																														
RET	5979	MSKCC	GRCh37	10	43613845	43613845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	174	947	0	ENST00000355710.3:c.2309G>A	p.Arg770Gln	p.R770Q	ENST00000355710	NM_020975.4	770	cGa/cAa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852035	63852035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	156	799	1	ENST00000279873.7:c.2813C>T	p.Ser938Phe	p.S938F	ENST00000279873	NM_032199.2	938	tCc/tTc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852712	63852712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	164	832	0	ENST00000279873.7:c.3490C>T	p.Pro1164Ser	p.P1164S	ENST00000279873	NM_032199.2	1164	Cct/Tct																																																																														
TET1	80312	MSKCC	GRCh37	10	70442609	70442609	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	175	746	0	ENST00000373644.4:c.4931T>C	p.Val1644Ala	p.V1644A	ENST00000373644	NM_030625.2	1644	gTt/gCt																																																																														
TET1	80312	MSKCC	GRCh37	10	70446447	70446447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	155	701	0	ENST00000373644.4:c.5387C>T	p.Ser1796Leu	p.S1796L	ENST00000373644	NM_030625.2	1796	tCg/tTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944138	71944139	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	145	826	1	ENST00000298229.2:c.1971_1972delinsTT	p.Pro658Ser	p.P658S	ENST00000298229	NM_001567.3	657	ttCCca/ttTTca																																																																														
CBL	867	MSKCC	GRCh37	11	119146792	119146792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	137	766	1	ENST00000264033.4:c.955C>A	p.Pro319Thr	p.P319T	ENST00000264033	NM_005188.3	319	Cct/Act																																																																														
CCND2	894	MSKCC	GRCh37	12	4409108	4409108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	139	653	1	ENST00000261254.3:c.803G>A	p.Gly268Glu	p.G268E	ENST00000261254	NM_001759.3	268	gGa/gAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435227	18435227	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	83	477	0	ENST00000266497.5:c.212G>A	p.Trp71Ter	p.W71*	ENST00000266497		71	tGg/tAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552663	18552663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	159	958	1	ENST00000266497.5:c.2074C>T	p.Pro692Ser	p.P692S	ENST00000266497		692	Cct/Tct																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644451	18644451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	154	750	1	ENST00000266497.5:c.2629C>T	p.Pro877Ser	p.P877S	ENST00000266497		877	Cct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380196	25380196	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	132	632	0	ENST00000256078.4:c.262A>T	p.Lys88Ter	p.K88*	ENST00000256078	NM_033360.2	88	Aaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433806	49433806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	225	1044	1	ENST00000301067.7:c.7747G>A	p.Ala2583Thr	p.A2583T	ENST00000301067	NM_003482.3	2583	Gcc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443489	49443490	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	126	654	2	ENST00000301067.7:c.3881_3882delinsTT	p.Ser1294Phe	p.S1294F	ENST00000301067	NM_003482.3	1294	tCC/tTT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445532	49445532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	248	926	0	ENST00000301067.7:c.1934C>T	p.Ser645Phe	p.S645F	ENST00000301067	NM_003482.3	645	tCc/tTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008060	29008060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	81	592	1	ENST00000282397.4:c.709C>T	p.Pro237Ser	p.P237S	ENST00000282397	NM_002019.4	237	Cca/Tca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893241	32893241	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	113	504	0	ENST00000380152.3:c.95T>C	p.Phe32Ser	p.F32S	ENST00000380152		32	tTt/tCt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954186	32954186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	128	848	3	ENST00000380152.3:c.9160C>T	p.Pro3054Ser	p.P3054S	ENST00000380152		3054	Ccc/Tcc																																																																														
RB1	5925	MSKCC	GRCh37	13	48881415	48881415	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	76	264	0	ENST00000267163.4:c.138del		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281980	49281980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	186	935	2	ENST00000282018.3:c.1027G>A	p.Glu343Lys	p.E343K	ENST00000282018	NM_020377.2	343	Gaa/Aaa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643705	38643705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	265	922	0	ENST00000299084.4:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000299084	NM_152594.2	392	tCg/tTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420180	88420180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	202	662	1	ENST00000360948.2:c.2506G>A	p.Asp836Asn	p.D836N	ENST00000360948	NM_001012338.2	836	Gac/Aac																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476307	88476307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	252	991	0	ENST00000360948.2:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000360948	NM_001012338.2	609	Gat/Aat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669510	88669510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	195	683	0	ENST00000360948.2:c.1388G>A	p.Gly463Glu	p.G463E	ENST00000360948	NM_001012338.2	463	gGa/gAa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99442836	99442836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	226	748	0	ENST00000268035.6:c.1233G>C	p.Glu411Asp	p.E411D	ENST00000268035	NM_000875.3	411	gaG/gaC																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500435	99500436	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	248	786	1	ENST00000268035.6:c.3868_3869delinsTT	p.Pro1290Leu	p.P1290L	ENST00000268035	NM_000875.3	1290	CCg/TTg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222201	2222202	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	127	802	4	ENST00000326181.6:c.485_486delinsTT	p.Pro162Leu	p.P162L	ENST00000326181	NM_032271.2	162	cCC/cTT																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223352	2223352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	137	831	1	ENST00000326181.6:c.964C>T	p.Leu322Phe	p.L322F	ENST00000326181	NM_032271.2	322	Ctc/Ttc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777879	3777879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	205	1201	2	ENST00000262367.5:c.7169C>T	p.Thr2390Ile	p.T2390I	ENST00000262367	NM_004380.2	2390	aCc/aTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779076	3779076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	153	723	1	ENST00000262367.5:c.5972C>T	p.Pro1991Leu	p.P1991L	ENST00000262367	NM_004380.2	1991	cCg/cTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786787	3786788	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	110	611	3	ENST00000262367.5:c.4423_4424delinsTT	p.Pro1475Phe	p.P1475F	ENST00000262367	NM_004380.2	1475	CCt/TTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830809	3830809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	144	820	0	ENST00000262367.5:c.1747C>T	p.Pro583Ser	p.P583S	ENST00000262367	NM_004380.2	583	Cct/Tct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857368	9857368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	112	637	0	ENST00000330684.3:c.4033C>T	p.Pro1345Ser	p.P1345S	ENST00000330684	NM_001134407.1	1345	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857452	9857452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	107	676	0	ENST00000330684.3:c.3949G>A	p.Glu1317Lys	p.E1317K	ENST00000330684	NM_001134407.1	1317	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828723	72828723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	123	748	2	ENST00000268489.5:c.7858G>A	p.Glu2620Lys	p.E2620K	ENST00000268489	NM_006885.3	2620	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829202	72829202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	189	900	0	ENST00000268489.5:c.7379C>T	p.Pro2460Leu	p.P2460L	ENST00000268489	NM_006885.3	2460	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830907	72830907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	159	665	0	ENST00000268489.5:c.5674G>A	p.Glu1892Lys	p.E1892K	ENST00000268489	NM_006885.3	1892	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993830	72993830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	109	568	0	ENST00000268489.5:c.215C>T	p.Ser72Phe	p.S72F	ENST00000268489	NM_006885.3	72	tCc/tTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346532	89346533	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	151	787	2	ENST00000301030.4:c.6417_6418delinsAT	p.Glu2140Ter	p.E2140*	ENST00000301030	NM_001256183.1	2139	ccGGag/ccATag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	167	809	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965476	15965476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	174	605	0	ENST00000268712.3:c.5330G>A	p.Gly1777Glu	p.G1777E	ENST00000268712	NM_006311.3	1777	gGa/gAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29556313	29556318	+	inframe_deletion	In_Frame_Del	DEL	TTTATG	TTTATG	-			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	127	706	0	ENST00000358273.4:c.2680_2685del	p.Phe894_Met895del	p.F894_M895del	ENST00000358273	NM_001042492.2	894	TTTATG/-																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	164	771	2	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246278	41246278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	186	873	0	ENST00000357654.3:c.1270G>A	p.Gly424Ser	p.G424S	ENST00000357654	NM_007294.3	424	Ggt/Agt																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805745	46805745	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	159	814	1	ENST00000290295.7:c.211C>T	p.Gln71Ter	p.Q71*	ENST00000290295	NM_006361.5	71	Cag/Tag																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752420	55752420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	220	947	1	ENST00000284073.2:c.878C>T	p.Ser293Phe	p.S293F	ENST00000284073	NM_138962.2	293	tCc/tTc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58700953	58700953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	183	900	1	ENST00000305921.3:c.544G>A	p.Gly182Ser	p.G182S	ENST00000305921	NM_003620.3	182	Ggc/Agc																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732897	74732897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	56	169	0	ENST00000359995.5:c.346G>A	p.Gly116Arg	p.G116R	ENST00000359995	NM_001195427.1	116	Gga/Aga																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796041	78796041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	174	827	1	ENST00000306801.3:c.931G>A	p.Glu311Lys	p.E311K	ENST00000306801	NM_020761.2	311	Gaa/Aaa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39537635	39537635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	104	591	0	ENST00000262039.4:c.169C>T	p.Leu57Phe	p.L57F	ENST00000262039	NM_002647.2	57	Ctt/Ttt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45423051	45423051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	121	514	0	ENST00000262160.6:c.77G>A	p.Gly26Glu	p.G26E	ENST00000262160	NM_005901.5	26	gGa/gAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591796	48591796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	88	622	0	ENST00000342988.3:c.959C>T	p.Pro320Leu	p.P320L	ENST00000342988	NM_005359.5	320	cCt/cTt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56409144	56409144	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	90	564	2	ENST00000348428.3:c.1651C>T	p.Arg551Ter	p.R551*	ENST00000348428	NM_006785.3	551	Cga/Tga																																																																														
STK11	6794	MSKCC	GRCh37	19	1220433	1220433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	192	875	0	ENST00000326873.7:c.526G>A	p.Asp176Asn	p.D176N	ENST00000326873	NM_000455.4	176	Gac/Aac																																																																														
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	178	801	2	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094928	11094928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	156	820	0	ENST00000344626.4:c.101C>T	p.Pro34Leu	p.P34L	ENST00000344626	NM_003072.3	34	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292591	15292591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	199	945	1	ENST00000263388.2:c.2588C>T	p.Ser863Leu	p.S863L	ENST00000263388	NM_000435.2	863	tCg/tTg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19258583	19258583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	224	928	1	ENST00000162023.5:c.317C>T	p.Pro106Leu	p.P106L	ENST00000162023		106	cCt/cTt																																																																														
AXL	558	MSKCC	GRCh37	19	41727958	41727958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	124	722	0	ENST00000301178.4:c.583C>T	p.Pro195Ser	p.P195S	ENST00000301178	NM_021913.4	195	Cca/Tca																																																																														
AXL	558	MSKCC	GRCh37	19	41743962	41743963	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	193	1078	3	ENST00000301178.4:c.897_898delinsTT	p.His300Tyr	p.H300Y	ENST00000301178	NM_021913.4	299	ctCCat/ctTTat																																																																														
AXL	558	MSKCC	GRCh37	19	41743975	41743975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	205	1063	0	ENST00000301178.4:c.910C>T	p.Pro304Ser	p.P304S	ENST00000301178	NM_021913.4	304	Cct/Tct																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872382	45872383	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	180	939	2	ENST00000391945.4:c.128_129delinsTT	p.Pro43Leu	p.P43L	ENST00000391945	NM_000400.3	43	cCC/cTT																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085915	16085915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	120	666	2	ENST00000281043.3:c.1091C>T	p.Pro364Leu	p.P364L	ENST00000281043	NM_005378.4	364	cCc/cTc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966166	25966166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	168	851	0	ENST00000435504.4:c.3040C>T	p.Pro1014Ser	p.P1014S	ENST00000435504		1014	Cca/Tca																																																																														
ALK	238	MSKCC	GRCh37	2	29497997	29497997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	139	736	0	ENST00000389048.3:c.2009C>T	p.Ser670Leu	p.S670L	ENST00000389048	NM_004304.4	670	tCa/tTa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222510	39222510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	161	797	1	ENST00000402219.2:c.3100C>T	p.Pro1034Ser	p.P1034S	ENST00000402219	NM_005633.3	1034	Ccc/Tcc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46583396	46583396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	141	784	1	ENST00000263734.3:c.324G>A	p.Met108Ile	p.M108I	ENST00000263734	NM_001430.4	108	atG/atA																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607529	46607529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	199	926	0	ENST00000263734.3:c.1718C>T	p.Pro573Leu	p.P573L	ENST00000263734	NM_001430.4	573	cCa/cTa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209116179	209116179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	131	647	0	ENST00000345146.2:c.97C>T	p.Pro33Ser	p.P33S	ENST00000345146	NM_005896.2	33	Ccc/Tcc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812196	212812196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	80	580	0	ENST00000342788.4:c.380G>A	p.Gly127Glu	p.G127E	ENST00000342788	NM_005235.2	127	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812278	212812278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	117	628	1	ENST00000342788.4:c.298G>A	p.Glu100Lys	p.E100K	ENST00000342788	NM_005235.2	100	Gag/Aag																																																																														
INHA	3623	MSKCC	GRCh37	2	220439806	220439806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142337821		P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	189	847	0	ENST00000243786.2:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000243786	NM_002191.3	220	cGg/cAg																																																																														
PAK7	0	MSKCC	GRCh37	20	9546847	9546847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	139	607	0	ENST00000353224.5:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000353224	NM_177990.2	392	tCg/tTg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39713144	39713144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	85	521	0	ENST00000361337.2:c.550A>G	p.Lys184Glu	p.K184E	ENST00000361337	NM_003286.2	184	Aaa/Gaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739100	40739101	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	133	830	2	ENST00000373198.4:c.3183_3184delinsTT	p.Arg1062Cys	p.R1062C	ENST00000373198	NM_133170.3	1061	ctCCgc/ctTTgc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22123572	22123572	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	186	774	0	ENST00000215832.6:c.1004T>C	p.Leu335Ser	p.L335S	ENST00000215832	NM_002745.4	335	tTg/tCg																																																																														
EP300	2033	MSKCC	GRCh37	22	41513367	41513367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138538553		P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	182	803	1	ENST00000263253.7:c.271C>T	p.Pro91Ser	p.P91S	ENST00000263253	NM_001429.3	91	Cct/Tct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165321	47165321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	110	641	0	ENST00000409792.3:c.805C>T	p.Gln269Ter	p.Q269*	ENST00000409792	NM_014159.6	269	Caa/Taa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932925	49932926	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	218	1109	3	ENST00000296474.3:c.3018_3019delinsTT	p.Pro1007Ser	p.P1007S	ENST00000296474	NM_002447.2	1006	acACcc/acTTcc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247484	71247484	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	162	813	1	ENST00000318789.4:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000318789	NM_032682.5	17	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498489	89498489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	93	485	2	ENST00000336596.2:c.2461G>A	p.Gly821Arg	p.G821R	ENST00000336596	NM_005233.5	821	Gga/Aga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499483	89499483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	120	652	0	ENST00000336596.2:c.2653C>T	p.Pro885Ser	p.P885S	ENST00000336596	NM_005233.5	885	Ccc/Tcc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670708	134670708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	156	806	1	ENST00000398015.3:c.619C>T	p.Pro207Ser	p.P207S	ENST00000398015	NM_004441.4	207	Cca/Tca																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911651	134911651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	103	584	0	ENST00000398015.3:c.2116G>A	p.Asp706Asn	p.D706N	ENST00000398015	NM_004441.4	706	Gat/Aat																																																																														
TP63	8626	MSKCC	GRCh37	3	189590694	189590694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	126	743	0	ENST00000264731.3:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000264731	NM_003722.4	420	tCc/tTc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957750	1957750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	187	1004	0	ENST00000382891.5:c.2716C>T	p.Pro906Ser	p.P906S	ENST00000382891	NM_133335.3	906	Cca/Tca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332805	153332805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	164	801	0	ENST00000281708.4:c.151G>A	p.Glu51Lys	p.E51K	ENST00000281708	NM_033632.3	51	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1293570	1293570	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	175	965	1	ENST00000310581.5:c.1431del	p.Trp478GlyfsTer31	p.W478Gfs*31	ENST00000310581	NM_198253.2	477	ctC/ct																																																																														
TERT	7015	MSKCC	GRCh37	5	1294367	1294368	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	107	500	3	ENST00000310581.5:c.633_634delinsAA	p.Val212Ile	p.V212I	ENST00000310581	NM_198253.2	211	ggGGtc/ggAAtc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	110	411	1				ENST00000310581	NM_198253.2																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31504673	31504673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	170	911	0	ENST00000344624.3:c.1657C>T	p.Pro553Ser	p.P553S	ENST00000344624		553	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112102981	112102981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	107	729	2	ENST00000257430.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000257430	NM_000038.5	106	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112178202	112178202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	117	545	0	ENST00000257430.4:c.6911C>T	p.Ser2304Phe	p.S2304F	ENST00000257430	NM_000038.5	2304	tCt/tTt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505122	149505122	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	191	880	2	ENST00000261799.4:c.1693C>T	p.Arg565Ter	p.R565*	ENST00000261799	NM_002609.3	565	Cga/Tga																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524635	176524636	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	153	964	2	ENST00000292408.4:c.2367_2368delinsAA	p.Gly790Arg	p.G790R	ENST00000292408	NM_213647.1	789	ttGGga/ttAAga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047996	180047996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	160	814	0	ENST00000261937.6:c.2179G>A	p.Ala727Thr	p.A727T	ENST00000261937	NM_182925.4	727	Gcg/Acg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185029	32185029	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	163	882	0	ENST00000375023.3:c.1639C>T	p.Arg547Ter	p.R547*	ENST00000375023	NM_004557.3	547	Cga/Tga																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821503	32821503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	192	747	0	ENST00000354258.4:c.91G>A	p.Gly31Arg	p.G31R	ENST00000354258	NM_000593.5	31	Gga/Aga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288707	33288707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	128	636	0	ENST00000374542.5:c.845C>T	p.Thr282Ile	p.T282I	ENST00000374542	NM_001141970.1	282	aCc/aTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967841	93967841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	147	825	0	ENST00000369303.4:c.2086C>T	p.His696Tyr	p.H696Y	ENST00000369303	NM_004440.3	696	Cat/Tat																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120729	94120729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	104	702	0	ENST00000369303.4:c.322G>A	p.Asp108Asn	p.D108N	ENST00000369303	NM_004440.3	108	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117645507	117645507	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147114498		P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	136	876	1	ENST00000368508.3:c.5629C>T	p.Pro1877Ser	p.P1877S	ENST00000368508	NM_002944.2	1877	Cca/Tca																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199705	138199705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	160	760	0	ENST00000237289.4:c.1123C>T	p.Pro375Ser	p.P375S	ENST00000237289	NM_001270507.1	375	Cct/Tct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527454	157527454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	140	596	1	ENST00000346085.5:c.5179G>A	p.Asp1727Asn	p.D1727N	ENST00000346085	NM_020732.3	1727	Gat/Aat																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468222	50468222	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	185	873	0	ENST00000331340.3:c.1457T>C	p.Phe486Ser	p.F486S	ENST00000331340	NM_006060.4	486	tTc/tCc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508381	106508381	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	218	457	0	ENST00000359195.3:c.375G>A	p.Trp125Ter	p.W125*	ENST00000359195	NM_002649.2	125	tgG/tgA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508575	106508575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	104	473	0	ENST00000359195.3:c.569G>A	p.Ser190Asn	p.S190N	ENST00000359195	NM_002649.2	190	aGc/aAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508642	106508642	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	170	673	0	ENST00000359195.3:c.636G>A	p.Trp212Ter	p.W212*	ENST00000359195	NM_002649.2	212	tgG/tgA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508905	106508905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	93	574	0	ENST00000359195.3:c.899G>A	p.Gly300Glu	p.G300E	ENST00000359195	NM_002649.2	300	gGa/gAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523522	106523522	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	112	551	1	ENST00000359195.3:c.2674C>T	p.Gln892Ter	p.Q892*	ENST00000359195	NM_002649.2	892	Cag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523601	106523601	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	105	501	0	ENST00000359195.3:c.2753A>G	p.Glu918Gly	p.E918G	ENST00000359195	NM_002649.2	918	gAa/gGa																																																																														
MET	4233	MSKCC	GRCh37	7	116403175	116403175	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	112	837	0	ENST00000397752.3:c.2436A>T	p.Gln812His	p.Q812H	ENST00000397752	NM_000245.2	812	caA/caT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	109	661	0	ENST00000288602.6:c.1786G>A	p.Gly596Ser	p.G596S	ENST00000288602	NM_004333.4	596	Ggt/Agt																																																																														
BRAF	673	MSKCC	GRCh37	7	140487360	140487360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507472		P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	155	958	2	ENST00000288602.6:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000288602	NM_004333.4	389	Cgt/Tgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859965	151859965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	96	553	0	ENST00000262189.6:c.10697G>A	p.Ser3566Asn	p.S3566N	ENST00000262189	NM_170606.2	3566	aGc/aAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879256	151879256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	161	684	1	ENST00000262189.6:c.5689C>T	p.Pro1897Ser	p.P1897S	ENST00000262189	NM_170606.2	1897	Cca/Tca																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968102	68968102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	108	780	1	ENST00000288368.4:c.1131G>A	p.Met377Ile	p.M377I	ENST00000288368	NM_024870.2	377	atG/atA																																																																														
PREX2	80243	MSKCC	GRCh37	8	68981273	68981273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	75	464	0	ENST00000288368.4:c.1345G>A	p.Asp449Asn	p.D449N	ENST00000288368	NM_024870.2	449	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69000044	69000044	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	142	681	1	ENST00000288368.4:c.2113G>A	p.Gly705Arg	p.G705R	ENST00000288368	NM_024870.2	705	Gga/Aga																																																																														
PREX2	80243	MSKCC	GRCh37	8	69009388	69009389	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	143	841	0	ENST00000288368.4:c.2505_2506delinsAA	p.Val836Met	p.V836M	ENST00000288368	NM_024870.2	835	gtGGtg/gtAAtg																																																																														
TCEB1	0	MSKCC	GRCh37	8	74858933	74858933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	158	938	0	ENST00000284811.8:c.271C>T	p.Pro91Ser	p.P91S	ENST00000284811		91	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484186	8484186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	141	799	1	ENST00000356435.5:c.3346G>A	p.Gly1116Arg	p.G1116R	ENST00000356435		1116	Ggg/Agg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486196	8486196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	123	555	0	ENST00000356435.5:c.2621C>T	p.Ser874Phe	p.S874F	ENST00000356435		874	tCt/tTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528596	8528596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	116	621	1	ENST00000356435.5:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000356435		179	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636706	8636706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	64	361	0	ENST00000356435.5:c.203G>A	p.Arg68Lys	p.R68K	ENST00000356435		68	aGa/aAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	102	499	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	102	499	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
SYK	6850	MSKCC	GRCh37	9	93636979	93636979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	70	601	1	ENST00000375746.1:c.1029G>A	p.Met343Ile	p.M343I	ENST00000375746	NM_001174167.1	343	atG/atA																																																																														
RXRA	6256	MSKCC	GRCh37	9	137293556	137293556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	147	1054	0	ENST00000481739.1:c.107C>T	p.Ser36Phe	p.S36F	ENST00000481739	NM_002957.4	36	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139408990	139408990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	136	1037	2	ENST00000277541.6:c.2179C>T	p.His727Tyr	p.H727Y	ENST00000277541	NM_017617.3	727	Cac/Tac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412659	139412659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	170	1012	0	ENST00000277541.6:c.1185G>T	p.Lys395Asn	p.K395N	ENST00000277541	NM_017617.3	395	aaG/aaT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417607	139417607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	214	988	0	ENST00000277541.6:c.437C>T	p.Ser146Phe	p.S146F	ENST00000277541	NM_017617.3	146	tCc/tTc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314895	1314895	+	downstream_gene_variant	3'Flank	SNP	T	T	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	101	500	0				ENST00000381566																																																																																	
CRLF2	64109	MSKCC	GRCh37	X	1331502	1331502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	126	807	0	ENST00000381566.1:c.26G>A	p.Gly9Glu	p.G9E	ENST00000381566		9	gGa/gAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224117	53224117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	161	484	0	ENST00000375401.3:c.3434C>A	p.Ser1145Tyr	p.S1145Y	ENST00000375401	NM_004187.3	1145	tCt/tAt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225222	53225222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	145	384	0	ENST00000375401.3:c.2996C>T	p.Pro999Leu	p.P999L	ENST00000375401	NM_004187.3	999	cCa/cTa																																																																														
AR	367	MSKCC	GRCh37	X	66766538	66766538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	174	476	2	ENST00000374690.3:c.1550C>T	p.Pro517Leu	p.P517L	ENST00000374690	NM_000044.3	517	cCc/cTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70340967	70340967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	196	407	0	ENST00000374080.3:c.700G>T	p.Asp234Tyr	p.D234Y	ENST00000374080		234	Gat/Tat																																																																														
BTK	695	MSKCC	GRCh37	X	100612496	100612496	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	112	377	0	ENST00000308731.7:c.1177+1G>A		p.X393_splice	ENST00000308731	NM_000061.2	393																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500436	99500436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	246	786	1	ENST00000268035.6:c.3869C>T	p.Pro1290Leu	p.P1290L	ENST00000268035	NM_000875.3	1290	cCg/cTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	206	503	0	ENST00000344626.4:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000344626	NM_003072.3	1192	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	216	386	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	250	613	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341734	8341734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	194	652	1	ENST00000356435.5:c.4906G>A	p.Glu1636Lys	p.E1636K	ENST00000356435		1636	Gaa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332853	153332853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	260	566	0	ENST00000281708.4:c.103C>T	p.Arg35Cys	p.R35C	ENST00000281708	NM_033632.3	35	Cgt/Tgt																																																																														
MYC	4609	MSKCC	GRCh37	8	128750677	128750678	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	383	567	1	ENST00000377970.2:c.214_215delinsTT	p.Pro72Phe	p.P72F	ENST00000377970	NM_002467.4	72	CCc/TTc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851734	63851734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	280	700	0	ENST00000279873.7:c.2512C>T	p.His838Tyr	p.H838Y	ENST00000279873	NM_032199.2	838	Cat/Tat																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99482482	99482482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	236	628	2	ENST00000268035.6:c.3350G>T	p.Gly1117Val	p.G1117V	ENST00000268035	NM_000875.3	1117	gGa/gTa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639161	3639161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	218	672	1	ENST00000294008.3:c.4478C>T	p.Ser1493Leu	p.S1493L	ENST00000294008	NM_032444.2	1493	tCg/tTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349937	89349937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	312	881	0	ENST00000301030.4:c.3013C>T	p.Pro1005Ser	p.P1005S	ENST00000301030	NM_001256183.1	1005	Cca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579421	7579421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	262	651	1	ENST00000269305.4:c.266C>T	p.Pro89Leu	p.P89L	ENST00000269305	NM_001126112.2	89	cCc/cTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37863384	37863384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	242	603	0	ENST00000269571.5:c.215C>T	p.Ser72Phe	p.S72F	ENST00000269571		72	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725567	117725567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	242	553	0	ENST00000368508.3:c.314C>T	p.Pro105Leu	p.P105L	ENST00000368508	NM_002944.2	105	cCc/cTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069613	69069613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	226	539	1	ENST00000288368.4:c.4288C>T	p.Gln1430Ter	p.Q1430*	ENST00000288368	NM_024870.2	1430	Caa/Taa																																																																														
AR	367	MSKCC	GRCh37	X	66905909	66905909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	203	510	0	ENST00000374690.3:c.1826G>A	p.Arg609Lys	p.R609K	ENST00000374690	NM_000044.3	609	aGg/aAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76875980	76875980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	188	436	0	ENST00000373344.5:c.5155G>A	p.Asp1719Asn	p.D1719N	ENST00000373344	NM_000489.3	1719	Gat/Aat																																																																														
ATRX	546	MSKCC	GRCh37	X	76907783	76907783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	188	390	1	ENST00000373344.5:c.4378G>A	p.Glu1460Lys	p.E1460K	ENST00000373344	NM_000489.3	1460	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	256	486	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	308	747	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197342	94197342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	180	609	0	ENST00000323929.3:c.1162C>T	p.Arg388Trp	p.R388W	ENST00000323929	NM_005591.3	388	Cgg/Tgg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609673	28609673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	123	676	0	ENST00000241453.7:c.1556C>T	p.Ser519Phe	p.S519F	ENST00000241453	NM_004119.2	519	tCc/tTc																																																																														
PARK2	0	MSKCC	GRCh37	6	162206911	162206911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	140	375	0	ENST00000366898.1:c.764C>T	p.Ser255Phe	p.S255F	ENST00000366898	NM_004562.2	255	tCc/tTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500876	149500876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	235	699	0	ENST00000261799.4:c.2354G>A	p.Arg785Lys	p.R785K	ENST00000261799	NM_002609.3	785	aGg/aAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858517	9858517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	94	561	1	ENST00000330684.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000330684	NM_001134407.1	962	Gaa/Aaa																																																																														
STK11	6794	MSKCC	GRCh37	19	1220715	1220715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	328	720	0	ENST00000326873.7:c.733C>T	p.Leu245Phe	p.L245F	ENST00000326873	NM_000455.4	245	Ctc/Ttc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852608	63852608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	115	542	0	ENST00000279873.7:c.3386G>A	p.Gly1129Glu	p.G1129E	ENST00000279873	NM_032199.2	1129	gGa/gAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	320	485	0	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	242	572	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	242	572	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	147	454	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468158	50468158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	538	566	1	ENST00000331340.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331340	NM_006060.4	465	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289974	15289974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	356	861	0	ENST00000263388.2:c.3580C>T	p.Pro1194Ser	p.P1194S	ENST00000263388	NM_000435.2	1194	Ccc/Tcc																																																																														
WT1	7490	MSKCC	GRCh37	11	32421528	32421528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	205	638	0	ENST00000332351.3:c.1064G>A	p.Arg355Lys	p.R355K	ENST00000332351	NM_024426.4	355	aGa/aAa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589808	28589808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	84	537	0	ENST00000241453.7:c.2572G>A	p.Glu858Lys	p.E858K	ENST00000241453	NM_004119.2	858	Gaa/Aaa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457642	67457642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	122	765	0	ENST00000327367.4:c.452C>T	p.Pro151Leu	p.P151L	ENST00000327367	NM_005902.3	151	cCc/cTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18699293	18699293	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	212	467	0	ENST00000266497.5:c.3394C>T	p.Gln1132Ter	p.Q1132*	ENST00000266497		1132	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579717	7579717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	134	669	0	ENST00000269305.4:c.79C>T	p.Pro27Ser	p.P27S	ENST00000269305	NM_001126112.2	27	Cct/Tct																																																																														
PAK7	0	MSKCC	GRCh37	20	9561124	9561124	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	121	389	1	ENST00000353224.5:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000353224	NM_177990.2	220	Cag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3831220	3831220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	187	445	1	ENST00000262367.5:c.1661C>T	p.Ser554Phe	p.S554F	ENST00000262367	NM_004380.2	554	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	242	572	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244913	123244913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	294	931	0	ENST00000358487.5:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000358487	NM_000141.4	731	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408912	41408912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	122	444	1	ENST00000373198.4:c.514G>A	p.Gly172Ser	p.G172S	ENST00000373198	NM_133170.3	172	Ggt/Agt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	95	529	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																														
AR	367	MSKCC	GRCh37	X	66765647	66765647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	336	454	0	ENST00000374690.3:c.659C>T	p.Ser220Phe	p.S220F	ENST00000374690	NM_000044.3	220	tCc/tTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129652	2129652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	116	867	2	ENST00000219476.3:c.3379C>T	p.Arg1127Trp	p.R1127W	ENST00000219476	NM_000548.3	1127	Cgg/Tgg																																																																														
MPL	4352	MSKCC	GRCh37	1	43804359	43804359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	298	552	1	ENST00000372470.3:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000372470	NM_005373.2	120	cGg/cAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964477	93964477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	123	618	0	ENST00000369303.4:c.2420C>T	p.Ala807Val	p.A807V	ENST00000369303	NM_004440.3	807	gCc/gTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29588733	29588733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	97	304	0	ENST00000358273.4:c.4582C>T	p.His1528Tyr	p.H1528Y	ENST00000358273	NM_001042492.2	1528	Cat/Tat																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265314	152265314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	106	325	0	ENST00000206249.3:c.767G>A	p.Arg256Gln	p.R256Q	ENST00000206249	NM_000125.3	256	cGa/cAa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39595510	39595510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	215	410	0	ENST00000262039.4:c.1396C>T	p.Pro466Ser	p.P466S	ENST00000262039	NM_002647.2	466	Cca/Tca																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905494	50905494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	411	948	1	ENST00000440232.2:c.622C>T	p.Pro208Ser	p.P208S	ENST00000440232	NM_002691.3	208	Ccg/Tcg																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1227	234	810	1	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	252	425	0				ENST00000310581	NM_198253.2																																																																																
PREX2	80243	MSKCC	GRCh37	8	68992737	68992737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200411060		P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	296	806	0	ENST00000288368.4:c.1702G>A	p.Glu568Lys	p.E568K	ENST00000288368	NM_024870.2	568	Gaa/Aaa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108091	30108091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80271647		P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	176	608	1	ENST00000331968.5:c.716C>T	p.Ser239Leu	p.S239L	ENST00000331968	NM_002742.2	239	tCg/tTg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965985	18965985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	330	710	0	ENST00000262803.5:c.1478C>T	p.Pro493Leu	p.P493L	ENST00000262803	NM_002911.3	493	cCg/cTg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645919	67645919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	114	612	2	ENST00000264010.4:c.847C>T	p.Arg283Cys	p.R283C	ENST00000264010	NM_006565.3	283	Cgt/Tgt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458273	12458273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	129	650	0	ENST00000287820.6:c.890C>T	p.Pro297Leu	p.P297L	ENST00000287820	NM_015869.4	297	cCc/cTc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444311	50444311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	201	364	2	ENST00000331340.3:c.241G>A	p.Asp81Asn	p.D81N	ENST00000331340	NM_006060.4	81	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877444	40877444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	163	479	0	ENST00000373198.4:c.2252C>T	p.Ser751Phe	p.S751F	ENST00000373198	NM_133170.3	751	tCt/tTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628185	187628185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	218	733	0	ENST00000441802.2:c.2797C>T	p.Arg933Cys	p.R933C	ENST00000441802	NM_005245.3	933	Cgt/Tgt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174907	11174907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	323	697	0	ENST00000361445.4:c.7127C>T	p.Pro2376Leu	p.P2376L	ENST00000361445	NM_004958.3	2376	cCa/cTa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199421	16199421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	77	407	1	ENST00000375759.3:c.194C>T	p.Ser65Leu	p.S65L	ENST00000375759	NM_015001.2	65	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057758	27057758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	186	926	1	ENST00000324856.7:c.1466C>T	p.Pro489Leu	p.P489L	ENST00000324856	NM_006015.4	489	cCa/cTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27093034	27093034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	65	449	0	ENST00000324856.7:c.2965C>T	p.Pro989Ser	p.P989S	ENST00000324856	NM_006015.4	989	Ccc/Tcc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599203	28599203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	146	853	0	ENST00000253063.3:c.649C>T	p.Leu217Phe	p.L217F	ENST00000253063	NM_031459.4	217	Ctc/Ttc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363484	40363484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	124	660	1	ENST00000397332.2:c.745C>T	p.Pro249Ser	p.P249S	ENST00000397332	NM_001033082.2	249	Cct/Tct																																																																														
MPL	4352	MSKCC	GRCh37	1	43803559	43803559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	96	715	0	ENST00000372470.3:c.40C>T	p.Leu14Phe	p.L14F	ENST00000372470	NM_005373.2	14	Ctc/Ttc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115263162	115263162	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	113	499	0	ENST00000438362.2:c.2188C>T	p.Gln730Ter	p.Q730*	ENST00000438362	NM_001242891.1	730	Cag/Tag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458512	120458512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	347	608	1	ENST00000256646.2:c.6833C>T	p.Thr2278Ile	p.T2278I	ENST00000256646	NM_024408.3	2278	aCc/aTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458650	120458650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	104	526	1	ENST00000256646.2:c.6695C>T	p.Ser2232Phe	p.S2232F	ENST00000256646	NM_024408.3	2232	tCt/tTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120471794	120471794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	88	475	0	ENST00000256646.2:c.3697C>T	p.Pro1233Ser	p.P1233S	ENST00000256646	NM_024408.3	1233	Ccc/Tcc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844178	156844178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1194	181	843	2	ENST00000524377.1:c.1181C>T	p.Ser394Phe	p.S394F	ENST00000524377	NM_002529.3	394	tCc/tTc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163318826	163318826	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	123	513	2	ENST00000271452.3:c.1216C>T	p.Gln406Ter	p.Q406*	ENST00000271452	NM_145697.2	406	Caa/Taa																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666617	206666617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	101	663	0	ENST00000367120.3:c.1951C>T	p.His651Tyr	p.H651Y	ENST00000367120	NM_014002.3	651	Cac/Tac																																																																														
IL10	3586	MSKCC	GRCh37	1	206944311	206944311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	109	600	1	ENST00000423557.1:c.319G>A	p.Ala107Thr	p.A107T	ENST00000423557	NM_000572.2	107	Gcg/Acg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097751	8097751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	134	701	0	ENST00000346208.3:c.133G>A	p.Glu45Lys	p.E45K	ENST00000346208		45	Gag/Aag																																																																														
RET	5979	MSKCC	GRCh37	10	43623649	43623649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	219	662	0	ENST00000355710.3:c.3277G>A	p.Asp1093Asn	p.D1093N	ENST00000355710	NM_020975.4	1093	Gat/Aat																																																																														
SUFU	51684	MSKCC	GRCh37	10	104264001	104264001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	289	590	0	ENST00000369902.3:c.92C>T	p.Pro31Leu	p.P31L	ENST00000369902	NM_016169.3	31	cCc/cTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123245042	123245042	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	66	409	1	ENST00000358487.5:c.2062T>A	p.Ser688Thr	p.S688T	ENST00000358487	NM_000141.4	688	Tcc/Acc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123260373	123260373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	111	690	0	ENST00000358487.5:c.1528G>A	p.Glu510Lys	p.E510K	ENST00000358487	NM_000141.4	510	Gag/Aag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123263314	123263314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	153	494	0	ENST00000358487.5:c.1429C>T	p.Pro477Ser	p.P477S	ENST00000358487	NM_000141.4	477	Cca/Tca																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200282	67200282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	242	658	3	ENST00000312629.5:c.590C>T	p.Pro197Leu	p.P197L	ENST00000312629	NM_003952.2	197	cCc/cTc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589816	69589816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	51	112	0	ENST00000168712.1:c.37C>T	p.Pro13Ser	p.P13S	ENST00000168712	NM_002007.2	13	Ccg/Tcg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625447	69625447	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs79472069		P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	248	756	0	ENST00000334134.2:c.346G>A	p.Glu116Lys	p.E116K	ENST00000334134	NM_005247.2	116	Gag/Aag																																																																														
PGR	5241	MSKCC	GRCh37	11	100933211	100933211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	270	598	0	ENST00000325455.5:c.2179C>T	p.Leu727Phe	p.L727F	ENST00000325455	NM_001202474.3	727	Ctt/Ttt																																																																														
ATM	472	MSKCC	GRCh37	11	108173613	108173613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	116	475	0	ENST00000278616.4:c.5353C>T	p.Pro1785Ser	p.P1785S	ENST00000278616	NM_000051.3	1785	Cct/Tct																																																																														
CBL	867	MSKCC	GRCh37	11	119149245	119149245	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	214	644	0	ENST00000264033.4:c.1253T>G	p.Phe418Cys	p.F418C	ENST00000264033	NM_005188.3	418	tTc/tGc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12006405	12006405	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	343	543	0	ENST00000396373.4:c.375del	p.Lys125AsnfsTer84	p.K125Nfs*84	ENST00000396373	NM_001987.4	125	Aaa/aa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125015	46125015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	80	299	1	ENST00000334344.6:c.202C>T	p.Gln68Ter	p.Q68*	ENST00000334344	NM_152641.2	68	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444558	49444558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	220	717	0	ENST00000301067.7:c.2813C>T	p.Pro938Leu	p.P938L	ENST00000301067	NM_003482.3	938	cCa/cTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445686	49445686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	402	1097	0	ENST00000301067.7:c.1780C>T	p.Pro594Ser	p.P594S	ENST00000301067	NM_003482.3	594	Ccg/Tcg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446731	49446731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	244	528	0	ENST00000301067.7:c.1079C>T	p.Ser360Phe	p.S360F	ENST00000301067	NM_003482.3	360	tCc/tTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858615	57858615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	214	694	0	ENST00000228682.2:c.353G>A	p.Gly118Glu	p.G118E	ENST00000228682	NM_005269.2	118	gGa/gAa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858996	57858996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	285	723	0	ENST00000228682.2:c.492G>A	p.Met164Ile	p.M164I	ENST00000228682	NM_005269.2	164	atG/atA																																																																														
TBX3	6926	MSKCC	GRCh37	12	115110031	115110031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	299	857	0	ENST00000257566.3:c.1847C>T	p.Ser616Phe	p.S616F	ENST00000257566	NM_016569.3	616	tCt/tTt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435363	121435386	+	inframe_deletion	In_Frame_Del	DEL	CAGCCGCTGCACCCCTCCTACCAG	CAGCCGCTGCACCCCTCCTACCAG	-			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	201	728	0	ENST00000257555.6:c.1404_1427del	p.His469_Leu476del	p.H469_L476del	ENST00000257555		466	CAGCCGCTGCACCCCTCCTACCAG/-																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893575	28893575	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	82	481	2	ENST00000282397.4:c.3271del	p.Glu1091LysfsTer5	p.E1091Kfs*5	ENST00000282397	NM_002019.4	1091	Gaa/aa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004306	29004306	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	51	357	0	ENST00000282397.4:c.989-2A>T		p.X330_splice	ENST00000282397	NM_002019.4	330																																																																															
BRCA2	675	MSKCC	GRCh37	13	32968947	32968947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	61	514	0	ENST00000380152.3:c.9378G>C	p.Gln3126His	p.Q3126H	ENST00000380152		3126	caG/caC																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762084	43762084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	117	631	0	ENST00000382044.4:c.1361C>T	p.Pro454Leu	p.P454L	ENST00000382044	NM_001141980.1	454	cCt/cTt																																																																														
CD276	80381	MSKCC	GRCh37	15	73996237	73996237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	106	295	0	ENST00000318443.5:c.971C>T	p.Ser324Phe	p.S324F	ENST00000318443	NM_001024736.1	324	tCc/tTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3929883	3929883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	133	668	0	ENST00000262367.5:c.35C>T	p.Pro12Leu	p.P12L	ENST00000262367	NM_004380.2	12	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858037	9858037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	83	628	0	ENST00000330684.3:c.3364G>A	p.Gly1122Ser	p.G1122S	ENST00000330684	NM_001134407.1	1122	Ggt/Agt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831620	72831620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	228	666	0	ENST00000268489.5:c.4961C>T	p.Pro1654Leu	p.P1654L	ENST00000268489	NM_006885.3	1654	cCt/cTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965117	81965117	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11548655		P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	116	618	0	ENST00000359376.3:c.2597G>A	p.Gly866Glu	p.G866E	ENST00000359376	NM_002661.3	866	gGa/gAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81973526	81973526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	188	569	0	ENST00000359376.3:c.3343C>T	p.Pro1115Ser	p.P1115S	ENST00000359376	NM_002661.3	1115	Cca/Tca																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032471	12032471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	153	373	0	ENST00000353533.5:c.907G>A	p.Gly303Ser	p.G303S	ENST00000353533	NM_003010.3	303	Ggc/Agc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562976	29562976	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	106	632	0	ENST00000358273.4:c.3911T>G	p.Leu1304Ter	p.L1304*	ENST00000358273	NM_001042492.2	1304	tTa/tGa																																																																														
NF1	4763	MSKCC	GRCh37	17	29588778	29588778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	133	413	0	ENST00000358273.4:c.4627C>T	p.Leu1543Phe	p.L1543F	ENST00000358273	NM_001042492.2	1543	Ctt/Ttt																																																																														
NF1	4763	MSKCC	GRCh37	17	29663385	29663385	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	149	558	0	ENST00000358273.4:c.6041T>A	p.Phe2014Tyr	p.F2014Y	ENST00000358273	NM_001042492.2	2014	tTc/tAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872643	37872643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	313	923	0	ENST00000269571.5:c.1603C>T	p.Leu535Phe	p.L535F	ENST00000269571		535	Ctt/Ttt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40359693	40359693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	126	609	0	ENST00000293328.3:c.1960C>T	p.Arg654Trp	p.R654W	ENST00000293328	NM_012448.3	654	Cgg/Tgg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40359735	40359735	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	94	470	0	ENST00000293328.3:c.1918T>G	p.Phe640Val	p.F640V	ENST00000293328	NM_012448.3	640	Ttt/Gtt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435024	56435024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	208	667	0	ENST00000407977.2:c.2113G>A	p.Gly705Ser	p.G705S	ENST00000407977		705	Ggc/Agc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436148	56436148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	242	640	1	ENST00000407977.2:c.989G>A	p.Arg330Gln	p.R330Q	ENST00000407977		330	cGa/cAa																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56811539	56811539	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	194	592	0	ENST00000337432.4:c.1087T>A	p.Leu363Met	p.L363M	ENST00000337432	NM_058216.2	363	Ttg/Atg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63531750	63531750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	153	674	0	ENST00000307078.5:c.2231C>T	p.Pro744Leu	p.P744L	ENST00000307078	NM_004655.3	744	cCa/cTa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936846	78936846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	161	537	0	ENST00000306801.3:c.3928C>T	p.His1310Tyr	p.H1310Y	ENST00000306801	NM_020761.2	1310	Cac/Tac																																																																														
INSR	3643	MSKCC	GRCh37	19	7120734	7120734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	238	758	0	ENST00000302850.5:c.3556G>A	p.Glu1186Lys	p.E1186K	ENST00000302850	NM_000208.2	1186	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7166339	7166339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	326	725	0	ENST00000302850.5:c.1687C>T	p.Pro563Ser	p.P563S	ENST00000302850	NM_000208.2	563	Cca/Tca																																																																														
INSR	3643	MSKCC	GRCh37	19	7174720	7174720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	203	559	0	ENST00000302850.5:c.997G>A	p.Gly333Ser	p.G333S	ENST00000302850	NM_000208.2	333	Ggt/Agt																																																																														
INSR	3643	MSKCC	GRCh37	19	7267835	7267835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	163	561	0	ENST00000302850.5:c.173G>A	p.Gly58Glu	p.G58E	ENST00000302850	NM_000208.2	58	gGa/gAa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291043	10291043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	182	569	0	ENST00000340748.4:c.428C>T	p.Ser143Phe	p.S143F	ENST00000340748		143	tCc/tTc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17389744	17389744	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	382	890	1	ENST00000359435.4:c.877A>T	p.Asn293Tyr	p.N293Y	ENST00000359435	NM_001033549.1	293	Aac/Tac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212114	36212114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	444	644	0	ENST00000222270.7:c.1865C>T	p.Pro622Leu	p.P622L	ENST00000222270	NM_014727.1	622	cCc/cTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082808	16082808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	52	145	0	ENST00000281043.3:c.622G>A	p.Ala208Thr	p.A208T	ENST00000281043	NM_005378.4	208	Gcc/Acc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661594	227661594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	246	621	0	ENST00000305123.5:c.1861C>T	p.Pro621Ser	p.P621S	ENST00000305123	NM_005544.2	621	Cca/Tca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944544	40944544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	140	587	0	ENST00000373198.4:c.1958G>A	p.Arg653Gln	p.R653Q	ENST00000373198	NM_133170.3	653	cGg/cAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41818364	41818364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	17	34	0	ENST00000373198.4:c.10C>T	p.Leu4Phe	p.L4F	ENST00000373198	NM_133170.3	4	Ctc/Ttc																																																																														
EP300	2033	MSKCC	GRCh37	22	41551049	41551049	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	130	713	0	ENST00000263253.7:c.3193C>G	p.Leu1065Val	p.L1065V	ENST00000263253	NM_001429.3	1065	Ctt/Gtt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421406	12421406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181976291		P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	112	659	1	ENST00000287820.6:c.286G>A	p.Asp96Asn	p.D96N	ENST00000287820	NM_015869.4	96	Gac/Aac																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928055	49928055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	195	750	0	ENST00000296474.3:c.3673G>A	p.Ala1225Thr	p.A1225T	ENST00000296474	NM_002447.2	1225	Gct/Act																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940441	49940441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	260	770	0	ENST00000296474.3:c.602C>T	p.Ser201Phe	p.S201F	ENST00000296474	NM_002447.2	201	tCc/tTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52685815	52685815	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	156	539	0	ENST00000394830.3:c.657T>A	p.Asp219Glu	p.D219E	ENST00000394830	NM_018313.4	219	gaT/gaA																																																																														
KDR	3791	MSKCC	GRCh37	4	55968556	55968556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	219	580	0	ENST00000263923.4:c.2107G>A	p.Asp703Asn	p.D703N	ENST00000263923	NM_002253.2	703	Gat/Aat																																																																														
KDR	3791	MSKCC	GRCh37	4	55976722	55976722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	95	541	0	ENST00000263923.4:c.1103G>A	p.Gly368Glu	p.G368E	ENST00000263923	NM_002253.2	368	gGa/gAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157568	106157568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	100	387	0	ENST00000380013.4:c.2469G>A	p.Met823Ile	p.M823I	ENST00000380013	NM_001127208.2	823	atG/atA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541735	187541735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	150	420	0	ENST00000441802.2:c.6005C>T	p.Thr2002Ile	p.T2002I	ENST00000441802	NM_005245.3	2002	aCt/aTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1294085	1294085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	152	921	0	ENST00000310581.5:c.916G>A	p.Gly306Ser	p.G306S	ENST00000310581	NM_198253.2	306	Ggc/Agc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871312	35871312	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	45	330	0	ENST00000303115.3:c.534G>C	p.Trp178Cys	p.W178C	ENST00000303115	NM_002185.3	178	tgG/tgC																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945126	38945126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	136	400	1	ENST00000357387.3:c.4678C>T	p.His1560Tyr	p.H1560Y	ENST00000357387	NM_152756.3	1560	Cat/Tat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38947524	38947524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	135	305	0	ENST00000357387.3:c.4156T>C	p.Tyr1386His	p.Y1386H	ENST00000357387	NM_152756.3	1386	Tat/Cat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38959971	38959971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	121	342	1	ENST00000357387.3:c.1961C>A	p.Thr654Asn	p.T654N	ENST00000357387	NM_152756.3	654	aCc/aAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590460	67590460	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	39	253	1	ENST00000274335.5:c.1522T>A	p.Tyr508Asn	p.Y508N	ENST00000274335		508	Tac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112173909	112173909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	135	372	0	ENST00000257430.4:c.2618C>T	p.Ser873Phe	p.S873F	ENST00000257430	NM_000038.5	873	tCt/tTt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497181	149497181	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	69	480	1	ENST00000261799.4:c.3137G>A	p.Ser1046Asn	p.S1046N	ENST00000261799	NM_002609.3	1046	aGc/aAc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149503816	149503816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	178	512	0	ENST00000261799.4:c.2020G>A	p.Gly674Arg	p.G674R	ENST00000261799	NM_002609.3	674	Gga/Aga																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515443	149515443	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	63	453	1	ENST00000261799.4:c.41-2A>T		p.X14_splice	ENST00000261799	NM_002609.3	14																																																																															
NPM1	4869	MSKCC	GRCh37	5	170818741	170818741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	89	440	0	ENST00000296930.5:c.290C>T	p.Pro97Leu	p.P97L	ENST00000296930	NM_002520.6	97	cCa/cTa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176516688	176516688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	161	540	0	ENST00000292408.4:c.85G>A	p.Glu29Lys	p.E29K	ENST00000292408	NM_213647.1	29	Gag/Aag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520267	176520267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	247	699	0	ENST00000292408.4:c.1186C>T	p.His396Tyr	p.H396Y	ENST00000292408	NM_213647.1	396	Cac/Tac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176563026	176563026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	74	487	0	ENST00000439151.2:c.922C>T	p.Pro308Ser	p.P308S	ENST00000439151	NM_022455.4	308	Cca/Tca																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056747	180056747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	277	788	1	ENST00000261937.6:c.765G>A	p.Trp255Ter	p.W255*	ENST00000261937	NM_182925.4	255	tgG/tgA																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058724	180058724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	140	891	0	ENST00000261937.6:c.113C>T	p.Ser38Leu	p.S38L	ENST00000261937	NM_182925.4	38	tCa/tTa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20490545	20490545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	205	551	0	ENST00000346618.3:c.1282C>T	p.Pro428Ser	p.P428S	ENST00000346618	NM_001949.4	428	Ccc/Tcc																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271580	26271581	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	51	372	0	ENST00000305910.3:c.32_33delinsTT	p.Ser11Phe	p.S11F	ENST00000305910	NM_003534.2	11	tCC/tTT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673545	30673545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	261	710	0	ENST00000376406.3:c.3415C>T	p.Pro1139Ser	p.P1139S	ENST00000376406	NM_014641.2	1139	Ccc/Tcc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163452	32163452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	515	712	0	ENST00000375023.3:c.5774C>T	p.Pro1925Leu	p.P1925L	ENST00000375023	NM_004557.3	1925	cCc/cTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188626	32188626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	113	717	1	ENST00000375023.3:c.829C>T	p.Pro277Ser	p.P277S	ENST00000375023	NM_004557.3	277	Cca/Tca																																																																														
PRDM1	639	MSKCC	GRCh37	6	106543578	106543578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	72	323	0	ENST00000369096.4:c.380C>T	p.Pro127Leu	p.P127L	ENST00000369096	NM_001198.3	127	cCt/cTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117630038	117630038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	103	503	0	ENST00000368508.3:c.6488C>T	p.Pro2163Leu	p.P2163L	ENST00000368508	NM_002944.2	2163	cCa/cTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658501	117658501	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	143	532	0	ENST00000368508.3:c.5082G>A	p.Trp1694Ter	p.W1694*	ENST00000368508	NM_002944.2	1694	tgG/tgA																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519277	137519277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	121	507	0	ENST00000367739.4:c.1361C>T	p.Ser454Phe	p.S454F	ENST00000367739	NM_000416.2	454	tCc/tTc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005533	150005533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	130	398	0	ENST00000253339.5:c.692G>A	p.Gly231Glu	p.G231E	ENST00000253339		231	gGa/gAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157510868	157510869	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	186	674	1	ENST00000346085.5:c.3643_3644delinsTT	p.Pro1215Leu	p.P1215L	ENST00000346085	NM_020732.3	1215	CCa/TTa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975376	13975376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	104	537	0	ENST00000405192.2:c.511C>T	p.Pro171Ser	p.P171S	ENST00000405192	NM_001163147.1	171	Cca/Tca																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508071	106508071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	98	184	0	ENST00000359195.3:c.65G>A	p.Arg22Lys	p.R22K	ENST00000359195	NM_002649.2	22	aGg/aAg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513224	106513224	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	235	358	1	ENST00000359195.3:c.2128C>T	p.Gln710Ter	p.Q710*	ENST00000359195	NM_002649.2	710	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860260	151860260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	223	539	1	ENST00000262189.6:c.10402C>T	p.Pro3468Ser	p.P3468S	ENST00000262189	NM_170606.2	3468	Ccc/Tcc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860476	151860476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	104	655	0	ENST00000262189.6:c.10186C>T	p.Gln3396Ter	p.Q3396*	ENST00000262189	NM_170606.2	3396	Caa/Taa																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29197676	29197677	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	263	719	2	ENST00000240100.2:c.517_518delinsTT	p.Pro173Phe	p.P173F	ENST00000240100	NM_001394.6	173	CCc/TTc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38279326	38279326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	384	755	0	ENST00000425967.3:c.1163C>T	p.Thr388Ile	p.T388I	ENST00000425967	NM_001174067.1	388	aCc/aTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956789	68956789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	320	651	0	ENST00000288368.4:c.907G>A	p.Glu303Lys	p.E303K	ENST00000288368	NM_024870.2	303	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995539	68995539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	261	730	0	ENST00000288368.4:c.1943C>T	p.Pro648Leu	p.P648L	ENST00000288368	NM_024870.2	648	cCt/cTt																																																																														
NBN	4683	MSKCC	GRCh37	8	90976638	90976638	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	205	469	0	ENST00000265433.3:c.994G>A	p.Gly332Arg	p.G332R	ENST00000265433	NM_002485.4	332	Gga/Aga																																																																														
NBN	4683	MSKCC	GRCh37	8	90993013	90993013	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	173	541	0	ENST00000265433.3:c.429G>A	p.Trp143Ter	p.W143*	ENST00000265433	NM_002485.4	143	tgG/tgA																																																																														
MYC	4609	MSKCC	GRCh37	8	128751191	128751191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	219	439	0	ENST00000377970.2:c.728A>T	p.Glu243Val	p.E243V	ENST00000377970	NM_002467.4	243	gAg/gTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126726	5126726	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	130	556	0	ENST00000381652.3:c.3334C>T	p.Gln1112Ter	p.Q1112*	ENST00000381652	NM_004972.3	1112	Caa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524996	8524996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	159	401	1	ENST00000356435.5:c.608G>A	p.Gly203Glu	p.G203E	ENST00000356435		203	gGa/gAa																																																																														
SYK	6850	MSKCC	GRCh37	9	93637012	93637013	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	76	499	1	ENST00000375746.1:c.1062_1063delinsTT	p.Pro355Ser	p.P355S	ENST00000375746	NM_001174167.1	354	gaCCcc/gaTTcc																																																																														
SYK	6850	MSKCC	GRCh37	9	93637050	93637050	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199772052		P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	81	505	0	ENST00000375746.1:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000375746	NM_001174167.1	367	cGa/cAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209372	98209372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	219	523	1	ENST00000331920.6:c.4166C>T	p.Pro1389Leu	p.P1389L	ENST00000331920	NM_000264.3	1389	cCt/cTt																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128420073	128420073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	171	627	0	ENST00000265960.3:c.355G>A	p.Glu119Lys	p.E119K	ENST00000265960	NM_001006617.1	119	Gag/Aag																																																																														
ABL1	25	MSKCC	GRCh37	9	133759830	133759830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	197	536	0	ENST00000318560.5:c.2153C>T	p.Ser718Phe	p.S718F	ENST00000318560	NM_005157.4	718	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	154	316	0				ENST00000310581	NM_198253.2																																																																																
NF1	4763	MSKCC	GRCh37	17	29654712	29654712	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	98	503	0	ENST00000358273.4:c.5464C>T	p.Gln1822Ter	p.Q1822*	ENST00000358273	NM_001042492.2	1822	Cag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212293194	212293194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	22	512	0	ENST00000342788.4:c.2658G>A	p.Trp886Ter	p.W886*	ENST00000342788	NM_005235.2	886	tgG/tgA																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88428945	88428945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	11	537	0	ENST00000360948.2:c.2155G>A	p.Asp719Asn	p.D719N	ENST00000360948	NM_001012338.2	719	Gat/Aat																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78866579	78866579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	153	915	1	ENST00000306801.3:c.2152C>T	p.Arg718Cys	p.R718C	ENST00000306801	NM_020761.2	718	Cgt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650671	18650671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	13	523	0	ENST00000266497.5:c.2882G>A	p.Gly961Glu	p.G961E	ENST00000266497		961	gGa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	107	240	0				ENST00000310581	NM_198253.2																																																																																
MYCL	4610	MSKCC	GRCh37	1	40363122	40363122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	47	726	0	ENST00000397332.2:c.1107G>T	p.Arg369Ser	p.R369S	ENST00000397332	NM_001033082.2	369	agG/agT																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100478	8100478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	91	1002	0	ENST00000346208.3:c.452T>C	p.Phe151Ser	p.F151S	ENST00000346208		151	tTc/tCc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104352344	104352346	+	missense_variant	Missense_Mutation	ONP	ACC	ACC	TTT			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	35	634	0	ENST00000369902.3:c.460_462delinsTTT	p.Thr154Phe	p.T154F	ENST00000369902	NM_016169.3	154	ACC/TTT																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487188	56487188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	47	788	0	ENST00000267101.3:c.1334C>T	p.Ser445Phe	p.S445F	ENST00000267101	NM_001982.3	445	tCc/tTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138580	2138580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	106	853	0	ENST00000219476.3:c.5393C>T	p.Ser1798Phe	p.S1798F	ENST00000219476	NM_000548.3	1798	tCc/tTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640719	3640719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	96	884	3	ENST00000294008.3:c.2920C>T	p.Leu974Phe	p.L974F	ENST00000294008	NM_032444.2	974	Ctt/Ttt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857429	9857429	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	61	692	0	ENST00000330684.3:c.3972T>A	p.Phe1324Leu	p.F1324L	ENST00000330684	NM_001134407.1	1324	ttT/ttA																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458482	12458482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	56	931	1	ENST00000287820.6:c.1099G>A	p.Val367Ile	p.V367I	ENST00000287820	NM_015869.4	367	Gtt/Att																																																																														
TP63	8626	MSKCC	GRCh37	3	189455652	189455653	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	20	602	1	ENST00000264731.3:c.186_187delinsAA	p.Glu63Lys	p.E63K	ENST00000264731	NM_003722.4	62	ctGGaa/ctAAaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55964342	55964342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	21	691	0	ENST00000263923.4:c.2471C>T	p.Ala824Val	p.A824V	ENST00000263923	NM_002253.2	824	gCc/gTc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31511181	31511181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	46	1041	1	ENST00000344624.3:c.1393C>T	p.Pro465Ser	p.P465S	ENST00000344624		465	Ccg/Tcg																																																																														
STK19	8859	MSKCC	GRCh37	6	31939778	31939778	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	106	836	0	ENST00000375331.2:c.5A>T	p.Gln2Leu	p.Q2L	ENST00000375331	NM_004197.1	2	cAa/cTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170087	32170087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	174	998	0	ENST00000375023.3:c.3521G>A	p.Gly1174Glu	p.G1174E	ENST00000375023	NM_004557.3	1174	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631300	117631301	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	31	666	1	ENST00000368508.3:c.6377_6378delinsAA	p.Arg2126Gln	p.R2126Q	ENST00000368508	NM_002944.2	2126	cGG/cAA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117679006	117679006	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	27	615	0	ENST00000368508.3:c.3815A>T	p.Asn1272Ile	p.N1272I	ENST00000368508	NM_002944.2	1272	aAt/aTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69039639	69039639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	28	720	0	ENST00000288368.4:c.3751C>A	p.Leu1251Ile	p.L1251I	ENST00000288368	NM_024870.2	1251	Ctt/Att																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	149	355	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0022168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	3295	472	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62294212	62294212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			4458	318	665	0	ENST00000508582.2:c.580C>T	p.Arg194Cys	p.R194C	ENST00000508582		194	Cgc/Tgc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11168338	11168338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	140	403	0	ENST00000361445.4:c.7534G>A	p.Asp2512Asn	p.D2512N	ENST00000361445	NM_004958.3	2512	Gac/Aac																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114135	115114135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	167	594	0	ENST00000257566.3:c.1082G>A	p.Gly361Glu	p.G361E	ENST00000257566	NM_016569.3	361	gGg/gAg																																																																														
PAK7	0	MSKCC	GRCh37	20	9525068	9525068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	125	536	1	ENST00000353224.5:c.1817C>T	p.Thr606Ile	p.T606I	ENST00000353224	NM_177990.2	606	aCt/aTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0023323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	139	616	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	286	705	1	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0023323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	245	483	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	738	751	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557416	95557416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	148	714	0	ENST00000343455.3:c.5558C>T	p.Pro1853Leu	p.P1853L	ENST00000343455	NM_177438.2	1853	cCt/cTt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651335	52651335	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	201	947	1	ENST00000394830.3:c.1761A>G	p.Ile587Met	p.I587M	ENST00000394830	NM_018313.4	587	atA/atG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55224260	55224260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	167	808	0	ENST00000275493.2:c.1041C>G	p.Asp347Glu	p.D347E	ENST00000275493	NM_005228.3	347	gaC/gaG																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123499629	123499629	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	592	1003	0	ENST00000371139.4:c.156T>A	p.Tyr52Ter	p.Y52*	ENST00000371139	NM_001114937.2	52	taT/taA																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643738	38643738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	125	951	1	ENST00000299084.4:c.1208G>T	p.Arg403Leu	p.R403L	ENST00000299084	NM_152594.2	403	cGa/cTa																																																																														
TEK	7010	MSKCC	GRCh37	9	27172734	27172734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	154	694	0	ENST00000380036.4:c.749C>T	p.Thr250Met	p.T250M	ENST00000380036	NM_000459.3	250	aCg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	264	542	0				ENST00000310581	NM_198253.2																																																																																
KIT	3815	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	397	500	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120377	94120377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	206	316	0	ENST00000369303.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000369303	NM_004440.3	225	tCc/tTc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13949269	13949269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	134	285	0	ENST00000405192.2:c.859G>A	p.Glu287Lys	p.E287K	ENST00000405192	NM_001163147.1	287	Gaa/Aaa																																																																														
BLM	641	MSKCC	GRCh37	15	91358483	91358483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	333	540	0	ENST00000355112.3:c.4228C>A	p.Leu1410Ile	p.L1410I	ENST00000355112	NM_000057.2	1410	Ctt/Att																																																																														
TSC2	7249	MSKCC	GRCh37	16	2098753	2098753	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	308	528	0	ENST00000219476.3:c.137G>A	p.Arg46Lys	p.R46K	ENST00000219476	NM_000548.3	46	aGa/aAa																																																																														
ALK	238	MSKCC	GRCh37	2	29606709	29606709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	327	524	0	ENST00000389048.3:c.1171G>A	p.Gly391Arg	p.G391R	ENST00000389048	NM_004304.4	391	Gga/Aga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193117079	193117079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	220	449	0	ENST00000367435.3:c.812C>T	p.Pro271Leu	p.P271L	ENST00000367435	NM_024529.4	271	cCa/cTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243416	46243416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	171	407	1	ENST00000334344.6:c.1769G>A	p.Gly590Glu	p.G590E	ENST00000334344	NM_152641.2	590	gGg/gAg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426640	121426640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	246	523	0	ENST00000257555.6:c.331G>A	p.Asp111Asn	p.D111N	ENST00000257555		111	Gac/Aac																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134445	2134445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	421	814	1	ENST00000219476.3:c.4222G>A	p.Gly1408Ser	p.G1408S	ENST00000219476	NM_000548.3	1408	Ggc/Agc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778338	3778339	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	291	713	2	ENST00000262367.5:c.6709_6710delinsTT	p.Pro2237Phe	p.P2237F	ENST00000262367	NM_004380.2	2237	CCc/TTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576920	7576920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	343	640	1	ENST00000269305.4:c.926C>T	p.Pro309Leu	p.P309L	ENST00000269305	NM_001126112.2	309	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29563041	29563041	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	188	356	0	ENST00000358273.4:c.3974+2T>C		p.X1325_splice	ENST00000358273	NM_001042492.2	1325																																																																															
CD79B	974	MSKCC	GRCh37	17	62007619	62007620	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	678	715	0	ENST00000392795.3:c.246_247dup	p.Met83ArgfsTer9	p.M83Rfs*9	ENST00000392795	NM_001039933.1	83	atg/aGAtg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303293	15303293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	292	1108	0	ENST00000263388.2:c.235G>A	p.Glu79Lys	p.E79K	ENST00000263388	NM_000435.2	79	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221279	36221279	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	415	831	4	ENST00000222270.7:c.5113C>T	p.Arg1705Ter	p.R1705*	ENST00000222270	NM_014727.1	1705	Cga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027757	48027757	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	224	456	0	ENST00000234420.5:c.2635G>C	p.Ala879Pro	p.A879P	ENST00000234420	NM_000179.2	879	Gct/Cct																																																																														
NF2	4771	MSKCC	GRCh37	22	30074200	30074200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	269	560	1	ENST00000338641.4:c.1462C>T	p.Pro488Ser	p.P488S	ENST00000338641	NM_000268.3	488	Cca/Tca																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522726	67522726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	124	264	0	ENST00000274335.5:c.223G>A	p.Glu75Lys	p.E75K	ENST00000274335		75	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681004	117681004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	371	459	0	ENST00000368508.3:c.3616C>T	p.Leu1206Phe	p.L1206F	ENST00000368508	NM_002944.2	1206	Ctt/Ttt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875095	151875095	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	42	72	1	ENST00000262189.6:c.7443A>T	p.Arg2481Ser	p.R2481S	ENST00000262189	NM_170606.2	2481	agA/agT																																																																														
LYN	4067	MSKCC	GRCh37	8	56863343	56863343	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	185	330	0	ENST00000519728.1:c.487G>A	p.Gly163Arg	p.G163R	ENST00000519728	NM_002350.3	163	Gga/Aga																																																																														
AGO2	27161	MSKCC	GRCh37	8	141583012	141583013	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	321	725	1	ENST00000220592.5:c.234_235delinsAA	p.Met78_Val79delinsIleIle	p.M78_V79delinsII	ENST00000220592	NM_012154.3	78	atGGtc/atAAtc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500479	149500490	+	inframe_deletion	In_Frame_Del	DEL	CGCATGATGTCT	CGCATGATGTCT	-			P-0045456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	604	660	0	ENST00000261799.4:c.2547_2558del	p.Ile851_Asp854del	p.I851_D854del	ENST00000261799	NM_002609.3	849	cgAGACATCATGCGg/cgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0045456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	632	543	0	ENST00000269305.4:c.994-2A>G		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
DAXX	1616	MSKCC	GRCh37	6	33288965	33288965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	83	491	0	ENST00000374542.5:c.587C>T	p.Ala196Val	p.A196V	ENST00000374542	NM_001141970.1	196	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535425	187535425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	109	362	0	ENST00000441802.2:c.9149C>G	p.Ala3050Gly	p.A3050G	ENST00000441802	NM_005245.3	3050	gCa/gGa																																																																														
MED12	9968	MSKCC	GRCh37	X	70339242	70339268	+	inframe_deletion	In_Frame_Del	DEL	ATGTAAAACAAGGTTTCAATAACCAGC	ATGTAAAACAAGGTTTCAATAACCAGC	-			P-0045456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	178	528	0	ENST00000374080.3:c.119_145del	p.Asn40_Pro49delinsThr	p.N40_P49delinsT	ENST00000374080		40	aATGTAAAACAAGGTTTCAATAACCAGCct/act																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	77	424	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0045838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	127	626	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098803	178098803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	62	589	0	ENST00000397062.3:c.242G>A	p.Gly81Asp	p.G81D	ENST00000397062	NM_006164.4	81	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692811	89692811	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	42	270	0	ENST00000371953.3:c.295G>T	p.Glu99Ter	p.E99*	ENST00000371953	NM_000314.4	99	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591111	67591137	+	inframe_deletion	In_Frame_Del	DEL	AGACCTTATCCAGCTGAGAAAGACGAG	AGACCTTATCCAGCTGAGAAAGACGAG	-			P-0045838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	32	254	0	ENST00000274335.5:c.1709_1735del	p.Leu570_Asp578del	p.L570_D578del	ENST00000274335		568	ccAGACCTTATCCAGCTGAGAAAGACGAGa/cca																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941880	71941880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	65	785	0	ENST00000298229.2:c.1238A>G	p.Asn413Ser	p.N413S	ENST00000298229	NM_001567.3	413	aAc/aGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211893	36211893	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	96	819	0	ENST00000222270.7:c.1644T>G	p.Asp548Glu	p.D548E	ENST00000222270	NM_014727.1	548	gaT/gaG																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249887	39249904	+	inframe_deletion	In_Frame_Del	DEL	TCCTGTAGCATTGTTACA	TCCTGTAGCATTGTTACA	-			P-0045838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	114	552	0	ENST00000402219.2:c.1665_1682del	p.Asp555_Gln560del	p.D555_Q560del	ENST00000402219	NM_005633.3	555	gaTGTAACAATGCTACAGGAa/gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	35	349	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	102	645	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163823	72163823	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0045968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	28	192	0	ENST00000357731.5:c.536-1G>A		p.X179_splice	ENST00000357731	NM_173808.2	179																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55144096	55144096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	61	335	0	ENST00000257290.5:c.1925T>C	p.Met642Thr	p.M642T	ENST00000257290	NM_006206.4	642	aTg/aCg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44936025	44936027	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	GA			P-0045968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	47	436	0	ENST00000377967.4:c.2786_2788delinsGA	p.Pro929ArgfsTer8	p.P929Rfs*8	ENST00000377967	NM_021140.2	929	cCTCcc/cGAcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	15	538	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	74	343	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	148	612	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	130	473	0	ENST00000361445.4:c.5930C>T	p.Thr1977Ile	p.T1977I	ENST00000361445	NM_004958.3	1977	aCa/aTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	278	376	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175101	112175101	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	19	139	0	ENST00000257430.4:c.3814del	p.Ser1272GlnfsTer16	p.S1272Qfs*16	ENST00000257430	NM_000038.5	1270	tgT/tg																																																																														
APC	324	MSKCC	GRCh37	5	112175908	112175908	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	29	175	0	ENST00000257430.4:c.4617del	p.Glu1540SerfsTer25	p.E1540Sfs*25	ENST00000257430	NM_000038.5	1539	tcA/tc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104356987	104356987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	192	652	1	ENST00000369902.3:c.847G>A	p.Glu283Lys	p.E283K	ENST00000369902	NM_016169.3	283	Gag/Aag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246191	46246191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	48	335	0	ENST00000334344.6:c.4285A>T	p.Ser1429Cys	p.S1429C	ENST00000334344	NM_152641.2	1429	Agc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575096	48575096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	41	306	0	ENST00000342988.3:c.290G>T	p.Arg97Leu	p.R97L	ENST00000342988	NM_005359.5	97	cGt/cTt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591136	67591137	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAG			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	46	280	0	ENST00000274335.5:c.1730_1732dup	p.Arg577_Asp578insGly	p.R577_D578insG	ENST00000274335		577	aga/aGAGga																																																																														
PMS2	5395	MSKCC	GRCh37	7	6031609	6031609	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	25	189	0	ENST00000265849.7:c.983A>T	p.Asp328Val	p.D328V	ENST00000265849	NM_000535.5	328	gAt/gTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	69	387	0	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																																																														
TET2	54790	MSKCC	GRCh37	4	106158451	106158451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	131	204	0	ENST00000380013.4:c.3352A>G	p.Asn1118Asp	p.N1118D	ENST00000380013	NM_001127208.2	1118	Aat/Gat																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412493	80412493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			115	169	336	0	ENST00000286548.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000286548	NM_002072.3	183	cGa/cAa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396497	396497	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000968-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			656	362	810	0	ENST00000262320.3:c.529A>T	p.Ile177Phe	p.I177F	ENST00000262320	NM_003502.3	177	Atc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0009432-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	247	631	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SDHB	6390	MSKCC	GRCh37	1	17355104	17355104	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009432-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	149	321	0	ENST00000375499.3:c.414T>A	p.Asp138Glu	p.D138E	ENST00000375499	NM_003000.2	138	gaT/gaA																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115975	8115975	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009432-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	153	340	0	ENST00000346208.3:c.1321del	p.Ala441ProfsTer34	p.A441Pfs*34	ENST00000346208		441	Gcc/cc																																																																														
RB1	5925	MSKCC	GRCh37	13	48934245	48934279	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGCTCAAAGAACCATATAGTAAGTATTTAATTTA	TTGCTCAAAGAACCATATAGTAAGTATTTAATTTA	-			P-0009432-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	66	222	0	ENST00000267163.4:c.701_718+17del		p.X234_splice	ENST00000267163	NM_000321.2	234																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	227	308	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																														
MGA	23269	MSKCC	GRCh37	15	42019560	42019560	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			131	170	356	0	ENST00000219905.7:c.3613G>T	p.Gly1205Ter	p.G1205*	ENST00000219905	NM_001164273.1	1205	Gga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	352	805	0	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952519	17952520	+	missense_variant	Missense_Mutation	DNP	TG	TG	AC			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	182	610	3	ENST00000458235.1:c.913_914delinsGT	p.Gln305Val	p.Q305V	ENST00000458235	NM_000215.3	305	CAg/GTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15938117	15938117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	22	243	0	ENST00000268712.3:c.7097C>T	p.Thr2366Met	p.T2366M	ENST00000268712	NM_006311.3	2366	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426489	49426489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	408	797	1	ENST00000301067.7:c.11999G>T	p.Gly4000Val	p.G4000V	ENST00000301067	NM_003482.3	4000	gGc/gTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133238115	133238115	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	35	273	0	ENST00000320574.5:c.2862G>C	p.Lys954Asn	p.K954N	ENST00000320574	NM_006231.2	954	aaG/aaC																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061637	38061637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	129	143	0	ENST00000250448.2:c.352G>A	p.Ala118Thr	p.A118T	ENST00000250448	NM_004496.3	118	Gcg/Acg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658546	3658546	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	103	628	0	ENST00000294008.3:c.420G>C	p.Glu140Asp	p.E140D	ENST00000294008	NM_032444.2	140	gaG/gaC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831770	72831770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	75	631	0	ENST00000268489.5:c.4811C>T	p.Ala1604Val	p.A1604V	ENST00000268489	NM_006885.3	1604	gCc/gTc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607721	46607721	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	131	723	0	ENST00000263734.3:c.1910C>G	p.Thr637Ser	p.T637S	ENST00000263734	NM_001430.4	637	aCc/aGc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374354	138374354	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	71	250	0	ENST00000289153.2:c.3090A>C	p.Leu1030Phe	p.L1030F	ENST00000289153	NM_006219.2	1030	ttA/ttC																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969071	93969071	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			85	141	143	0	ENST00000369303.4:c.1924+1G>C		p.X642_splice	ENST00000369303	NM_004440.3	642																																																																															
PREX2	80243	MSKCC	GRCh37	8	68956753	68956753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009789-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			731	258	502	1	ENST00000288368.4:c.871G>T	p.Gly291Ter	p.G291*	ENST00000288368	NM_024870.2	291	Gga/Tga																																																																														
SUFU	51684	MSKCC	GRCh37	10	104309776	104309776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	394	685	0	ENST00000369902.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000369902	NM_016169.3	123	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	967	430	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36421162	36421162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	211	345	0	ENST00000300305.3:c.35C>T	p.Ser12Leu	p.S12L	ENST00000300305		12	tCg/tTg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729175	66729175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	170	716	1	ENST00000307102.5:c.383G>A	p.Gly128Asp	p.G128D	ENST00000307102	NM_002755.3	128	gGc/gAc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852319	63852319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	254	502	0	ENST00000279873.7:c.3097C>T	p.Pro1033Ser	p.P1033S	ENST00000279873	NM_032199.2	1033	Ccc/Tcc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666615	206666615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	506	544	0	ENST00000367120.3:c.1949C>T	p.Ser650Phe	p.S650F	ENST00000367120	NM_014002.3	650	tCt/tTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967173	134967173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	86	349	0	ENST00000398015.3:c.2512G>A	p.Glu838Lys	p.E838K	ENST00000398015	NM_004441.4	838	Gag/Aag																																																																														
TET2	54790	MSKCC	GRCh37	4	106196241	106196241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	150	308	0	ENST00000380013.4:c.4574C>T	p.Ser1525Phe	p.S1525F	ENST00000380013	NM_001127208.2	1525	tCc/tTc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35861010	35861010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	228	438	0	ENST00000303115.3:c.139G>A	p.Glu47Lys	p.E47K	ENST00000303115	NM_002185.3	47	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120501	94120501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	246	404	0	ENST00000369303.4:c.550C>T	p.Leu184Phe	p.L184F	ENST00000369303	NM_004440.3	184	Ctt/Ttt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319853	8319853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	274	464	0	ENST00000356435.5:c.5648G>A	p.Arg1883Gln	p.R1883Q	ENST00000356435		1883	cGa/cAa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250139	110250139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			70	251	545	0	ENST00000374672.4:c.536C>T	p.Pro179Leu	p.P179L	ENST00000374672	NM_004235.4	179	cCc/cTc																																																																														
ATM	472	MSKCC	GRCh37	11	108160419	108160419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	581	563	1	ENST00000278616.4:c.4327C>T	p.His1443Tyr	p.H1443Y	ENST00000278616	NM_000051.3	1443	Cac/Tac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211536	46211536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	205	352	0	ENST00000334344.6:c.502G>A	p.Gly168Arg	p.G168R	ENST00000334344	NM_152641.2	168	Gga/Aga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244380	46244380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	305	528	0	ENST00000334344.6:c.2474C>T	p.Ser825Leu	p.S825L	ENST00000334344	NM_152641.2	825	tCa/tTa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73340179	73340179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	184	310	1	ENST00000377767.4:c.1901C>T	p.Ser634Phe	p.S634F	ENST00000377767	NM_014953.3	634	tCt/tTt																																																																														
MGA	23269	MSKCC	GRCh37	15	42028709	42028709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	170	640	0	ENST00000219905.7:c.4247C>T	p.Thr1416Ile	p.T1416I	ENST00000219905	NM_001164273.1	1416	aCt/aTt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782214	56782214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	248	435	0	ENST00000308159.5:c.55G>A	p.Glu19Lys	p.E19K	ENST00000308159	NM_014669.4	19	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81916938	81916938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	169	546	0	ENST00000359376.3:c.757G>A	p.Glu253Lys	p.E253K	ENST00000359376	NM_002661.3	253	Gaa/Aaa																																																																														
GPS2	2874	MSKCC	GRCh37	17	7218299	7218299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	245	447	0	ENST00000380728.2:c.73G>A	p.Glu25Lys	p.E25K	ENST00000380728		25	Gag/Aag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243954	5243954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	153	470	0	ENST00000357368.4:c.1528G>T	p.Gly510Trp	p.G510W	ENST00000357368	NM_002850.3	510	Ggg/Tgg																																																																														
CIC	23152	MSKCC	GRCh37	19	42793099	42793099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			115	337	665	0	ENST00000575354.2:c.991C>T	p.Pro331Ser	p.P331S	ENST00000575354	NM_015125.3	331	Ccg/Tcg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023135	27023135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			28	11	25	0	ENST00000324856.7:c.245delG	p.Gly82ValfsTer19	p.G82Vfs*19	ENST00000324856	NM_006015.4	81	Ggg/gg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056265	26056266	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	364	572	0	ENST00000343677.2:c.391_392delinsTT	p.Pro131Leu	p.P131L	ENST00000343677	NM_005319.3	131	CCa/TTa																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309968	30309969	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	293	546	1	ENST00000307677.4:c.53_54delinsTT	p.Ser18Phe	p.S18F	ENST00000307677	NM_138578.1	18	tCC/tTT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945102	151945102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			790	95	626	0	ENST00000262189.6:c.2417C>T	p.Ser806Phe	p.S806F	ENST00000262189	NM_170606.2	806	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	148	250	0				ENST00000310581	NM_198253.2																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118347548	118347548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			98	378	436	0	ENST00000534358.1:c.3185C>T	p.Ser1062Phe	p.S1062F	ENST00000534358	NM_005933.3	1062	tCt/tTt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607459	46607459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	223	720	2	ENST00000263734.3:c.1648C>T	p.Arg550Trp	p.R550W	ENST00000263734	NM_001430.4	550	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878038	151878038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			969	214	422	0	ENST00000262189.6:c.6907C>T	p.Pro2303Ser	p.P2303S	ENST00000262189	NM_170606.2	2303	Cca/Tca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884925	151884926	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	C			P-0010596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	624	295	1	ENST00000262189.6:c.4667_4668delinsG	p.Phe1556CysfsTer7	p.F1556Cfs*7	ENST00000262189	NM_170606.2	1556	tTT/tG																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416680	121416680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014808-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			293	77	770	0	ENST00000257555.6:c.109C>T	p.Leu37Phe	p.L37F	ENST00000257555		37	Ctc/Ttc																																																																														
PAK7	0	MSKCC	GRCh37	20	9520126	9520126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014808-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			182	55	335	0	ENST00000353224.5:c.2143C>A	p.Gln715Lys	p.Q715K	ENST00000353224	NM_177990.2	715	Caa/Aaa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131927018	131927018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014808-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			145	46	169	0	ENST00000265335.6:c.1555C>T	p.Arg519Cys	p.R519C	ENST00000265335		519	Cgt/Tgt																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30321008	30321008	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014808-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			167	67	262	0	ENST00000322652.5:c.1418G>C	p.Arg473Thr	p.R473T	ENST00000322652	NM_015355.2	473	aGa/aCa																																																																														
AR	367	MSKCC	GRCh37	X	66765949	66765949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014808-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			215	98	736	0	ENST00000374690.3:c.961G>A	p.Glu321Lys	p.E321K	ENST00000374690	NM_000044.3	321	Gaa/Aaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217372	123217372	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014808-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			190	30	312	0	ENST00000218089.9:c.3026A>C	p.Lys1009Thr	p.K1009T	ENST00000218089	NM_001042749.1	1009	aAa/aCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	238	587	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	337	845	2	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	16	372	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455091	50455091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	84	514	0	ENST00000331340.3:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000331340	NM_006060.4	213	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108143551	108143551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201780199		P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	258	664	0	ENST00000278616.4:c.3256C>T	p.Arg1086Cys	p.R1086C	ENST00000278616	NM_000051.3	1086	Cgc/Tgc																																																																														
INSR	3643	MSKCC	GRCh37	19	7143018	7143018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	130	747	1	ENST00000302850.5:c.2351C>T	p.Ser784Phe	p.S784F	ENST00000302850	NM_000208.2	784	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	106	915	0	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	66	355	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719178	61719178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	68	549	0	ENST00000401558.2:c.1879C>T	p.Pro627Ser	p.P627S	ENST00000401558	NM_003400.3	627	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076862	41076862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	186	526	0	ENST00000373198.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000373198	NM_133170.3	520	Gag/Aag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670708	134670708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	187	697	2	ENST00000398015.3:c.619C>T	p.Pro207Ser	p.P207S	ENST00000398015	NM_004441.4	207	Cca/Tca																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	157	464	0	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729949	41729949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	158	860	0	ENST00000242208.4:c.580G>A	p.Glu194Lys	p.E194K	ENST00000242208	NM_002192.2	194	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101007	41101007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	95	582	1	ENST00000373198.4:c.1349G>A	p.Arg450Gln	p.R450Q	ENST00000373198	NM_133170.3	450	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509768	187509768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	52	249	0	ENST00000441802.2:c.13745C>T	p.Ser4582Phe	p.S4582F	ENST00000441802	NM_005245.3	4582	tCc/tTc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020582	14020582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	89	523	0	ENST00000311895.7:c.553C>T	p.Leu185Phe	p.L185F	ENST00000311895	NM_005236.2	185	Ctt/Ttt																																																																														
BTK	695	MSKCC	GRCh37	X	100611252	100611252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	55	562	0	ENST00000308731.7:c.1354C>T	p.Leu452Phe	p.L452F	ENST00000308731	NM_000061.2	452	Ctt/Ttt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161380	55161380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	115	585	1	ENST00000257290.5:c.3211G>A	p.Asp1071Asn	p.D1071N	ENST00000257290	NM_006206.4	1071	Gac/Aac																																																																														
AR	367	MSKCC	GRCh37	X	66905852	66905852	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	35	465	0	ENST00000374690.3:c.1769G>A	p.Gly590Glu	p.G590E	ENST00000374690	NM_000044.3	590	gGg/gAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467663	50467663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	92	666	0	ENST00000331340.3:c.898G>A	p.Glu300Lys	p.E300K	ENST00000331340	NM_006060.4	300	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41527607	41527607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	91	649	0	ENST00000263253.7:c.1498C>T	p.Pro500Ser	p.P500S	ENST00000263253	NM_001429.3	500	Ccc/Tcc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405216	139405216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	204	773	3	ENST00000277541.6:c.2629C>T	p.Pro877Ser	p.P877S	ENST00000277541	NM_017617.3	877	Ccg/Tcg																																																																														
PAK7	0	MSKCC	GRCh37	20	9538311	9538311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	126	629	0	ENST00000353224.5:c.1687G>A	p.Gly563Arg	p.G563R	ENST00000353224	NM_177990.2	563	Gga/Aga																																																																														
PARK2	0	MSKCC	GRCh37	6	162683747	162683747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	121	701	0	ENST00000366898.1:c.222G>A	p.Trp74Ter	p.W74*	ENST00000366898	NM_004562.2	74	tgG/tgA																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748120	41748120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	95	199	0	ENST00000226382.2:c.649G>A	p.Gly217Arg	p.G217R	ENST00000226382	NM_003924.3	217	Ggg/Agg																																																																														
EP300	2033	MSKCC	GRCh37	22	41523617	41523617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	291	791	1	ENST00000263253.7:c.1033C>T	p.Leu345Phe	p.L345F	ENST00000263253	NM_001429.3	345	Ctt/Ttt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873648	35873648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	90	478	0	ENST00000303115.3:c.604G>A	p.Glu202Lys	p.E202K	ENST00000303115	NM_002185.3	202	Gag/Aag																																																																														
BTK	695	MSKCC	GRCh37	X	100617551	100617551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	95	719	0	ENST00000308731.7:c.518G>A	p.Gly173Glu	p.G173E	ENST00000308731	NM_000061.2	173	gGa/gAa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482607	56482607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	142	854	1	ENST00000267101.3:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000267101	NM_001982.3	355	aCc/aTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169006	32169006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	137	1038	2	ENST00000375023.3:c.4027C>T	p.Pro1343Ser	p.P1343S	ENST00000375023	NM_004557.3	1343	Cct/Tct																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295830	15295830	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	257	897	0	ENST00000263388.2:c.2297G>A	p.Gly766Glu	p.G766E	ENST00000263388	NM_000435.2	766	gGa/gAa																																																																														
ERG	2078	MSKCC	GRCh37	21	39755506	39755506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	78	452	0	ENST00000288319.7:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000288319	NM_182918.3	420	tCc/tTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52649421	52649421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	138	924	0	ENST00000394830.3:c.1870G>A	p.Glu624Lys	p.E624K	ENST00000394830	NM_018313.4	624	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892263	9892263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	245	669	0	ENST00000330684.3:c.2227G>A	p.Glu743Lys	p.E743K	ENST00000330684	NM_001134407.1	743	Gaa/Aaa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181543	32181543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	412	741	0	ENST00000375023.3:c.2242C>T	p.Pro748Ser	p.P748S	ENST00000375023	NM_004557.3	748	Cct/Tct																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508967	106508967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	62	465	0	ENST00000359195.3:c.961G>A	p.Glu321Lys	p.E321K	ENST00000359195	NM_002649.2	321	Gaa/Aaa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115751	8115751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	142	906	1	ENST00000346208.3:c.1097G>A	p.Arg366Gln	p.R366Q	ENST00000346208		366	cGa/cAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650845	37650845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	296	1005	2	ENST00000447079.4:c.2317C>T	p.Arg773Cys	p.R773C	ENST00000447079	NM_015083.1	773	Cgt/Tgt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148506444	148506444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	93	585	1	ENST00000320356.2:c.2068C>T	p.Arg690Cys	p.R690C	ENST00000320356	NM_004456.4	690	Cgt/Tgt																																																																														
HGF	3082	MSKCC	GRCh37	7	81381523	81381523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	177	471	2	ENST00000222390.5:c.538C>T	p.Pro180Ser	p.P180S	ENST00000222390	NM_000601.4	180	Cct/Tct																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022570	12022570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	117	736	0	ENST00000396373.4:c.676G>A	p.Glu226Lys	p.E226K	ENST00000396373	NM_001987.4	226	Gag/Aag																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874197	155874197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	150	761	1	ENST00000368323.3:c.334C>T	p.Arg112Cys	p.R112C	ENST00000368323	NM_006912.5	112	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1294409	1294409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	118	767	0	ENST00000310581.5:c.592G>A	p.Gly198Arg	p.G198R	ENST00000310581	NM_198253.2	198	Gga/Aga																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	202	939	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964488	70964488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	162	770	0	ENST00000276594.2:c.1540G>A	p.Glu514Lys	p.E514K	ENST00000276594	NM_024504.3	514	Gag/Aag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650562	18650562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	68	576	0	ENST00000266497.5:c.2773G>A	p.Asp925Asn	p.D925N	ENST00000266497		925	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69050656	69050656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	53	562	0	ENST00000288368.4:c.3991G>A	p.Glu1331Lys	p.E1331K	ENST00000288368	NM_024870.2	1331	Gaa/Aaa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865536	57865536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	141	822	0	ENST00000228682.2:c.3013G>A	p.Gly1005Arg	p.G1005R	ENST00000228682	NM_005269.2	1005	Gga/Aga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716366	18716366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	230	757	0	ENST00000266497.5:c.3713C>T	p.Ser1238Leu	p.S1238L	ENST00000266497		1238	tCa/tTa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714679	52714679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	250	715	1	ENST00000322088.6:c.437C>T	p.Ser146Leu	p.S146L	ENST00000322088	NM_014225.5	146	tCg/tTg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39575945	39575945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	115	583	0	ENST00000262039.4:c.878G>A	p.Arg293Lys	p.R293K	ENST00000262039	NM_002647.2	293	aGa/aAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177414	56177414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	51	469	0	ENST00000399503.3:c.2387C>T	p.Ser796Phe	p.S796F	ENST00000399503	NM_005921.1	796	tCc/tTc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163317623	163317623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	103	741	0	ENST00000271452.3:c.1019C>T	p.Ser340Leu	p.S340L	ENST00000271452	NM_145697.2	340	tCg/tTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257207	16257207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	112	821	0	ENST00000375759.3:c.4472C>T	p.Pro1491Leu	p.P1491L	ENST00000375759	NM_015001.2	1491	cCa/cTa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36934816	36934816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	129	646	0	ENST00000361632.4:c.1517C>T	p.Pro506Leu	p.P506L	ENST00000361632		506	cCc/cTc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076775	72076775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	126	741	0	ENST00000357731.5:c.722G>A	p.Gly241Asp	p.G241D	ENST00000357731	NM_173808.2	241	gGc/gAc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175831	176175831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	144	434	0	ENST00000367669.3:c.284C>T	p.Pro95Leu	p.P95L	ENST00000367669	NM_022457.5	95	cCc/cTc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981105	201981105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	89	663	0	ENST00000359651.3:c.184G>A	p.Glu62Lys	p.E62K	ENST00000359651		62	Gaa/Aaa																																																																														
FH	2271	MSKCC	GRCh37	1	241672031	241672031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	99	607	0	ENST00000366560.3:c.610C>T	p.His204Tyr	p.H204Y	ENST00000366560	NM_000143.3	204	Cat/Tat																																																																														
RET	5979	MSKCC	GRCh37	10	43613889	43613889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	133	924	0	ENST00000355710.3:c.2353C>T	p.Pro785Ser	p.P785S	ENST00000355710	NM_020975.4	785	Cca/Tca																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852076	63852076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	176	835	2	ENST00000279873.7:c.2854C>T	p.Pro952Ser	p.P952S	ENST00000279873	NM_032199.2	952	Ccc/Tcc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852448	63852448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	106	656	0	ENST00000279873.7:c.3226C>T	p.Pro1076Ser	p.P1076S	ENST00000279873	NM_032199.2	1076	Cct/Tct																																																																														
TET1	80312	MSKCC	GRCh37	10	70442596	70442596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	100	524	0	ENST00000373644.4:c.4918G>A	p.Glu1640Lys	p.E1640K	ENST00000373644	NM_030625.2	1640	Gaa/Aaa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123276929	123276929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200204947		P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	115	615	0	ENST00000358487.5:c.988C>T	p.Arg330Trp	p.R330W	ENST00000358487	NM_000141.4	330	Cgg/Tgg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64574482	64574483	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	272	662	1	ENST00000337652.1:c.927_927+1delinsAA		p.X309_splice	ENST00000337652	NM_130803.2	309																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71939807	71939807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	162	966	1	ENST00000298229.2:c.434C>T	p.Ser145Phe	p.S145F	ENST00000298229	NM_001567.3	145	tCt/tTt																																																																														
PGR	5241	MSKCC	GRCh37	11	100998475	100998475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	285	527	1	ENST00000325455.5:c.1327C>A	p.Pro443Thr	p.P443T	ENST00000325455	NM_001202474.3	443	Ccc/Acc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118359392	118359392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	98	541	1	ENST00000534358.1:c.4396C>T	p.Pro1466Ser	p.P1466S	ENST00000534358	NM_005933.3	1466	Cct/Tct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118371707	118371707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	66	298	0	ENST00000534358.1:c.6164C>T	p.Ser2055Phe	p.S2055F	ENST00000534358	NM_005933.3	2055	tCc/tTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	459851	459851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	133	1121	1	ENST00000399788.2:c.1244C>T	p.Ser415Leu	p.S415L	ENST00000399788	NM_001042603.1	415	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380243	25380243	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	152	925	1	ENST00000256078.4:c.215T>A	p.Met72Lys	p.M72K	ENST00000256078	NM_033360.2	72	aTg/aAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431838	49431838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	228	741	0	ENST00000301067.7:c.9301C>T	p.Pro3101Ser	p.P3101S	ENST00000301067	NM_003482.3	3101	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444013	49444013	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	103	784	0	ENST00000301067.7:c.3358G>T	p.Glu1120Ter	p.E1120*	ENST00000301067	NM_003482.3	1120	Gaa/Taa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865774	57865774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	141	895	0	ENST00000228682.2:c.3251C>T	p.Ala1084Val	p.A1084V	ENST00000228682	NM_005269.2	1084	gCt/gTt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856638	111856639	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	261	411	3	ENST00000341259.2:c.689_690delinsAA	p.Pro230Gln	p.P230Q	ENST00000341259	NM_005475.2	230	cCC/cAA																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557751	21557752	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	135	785	2	ENST00000382592.4:c.2093_2094delinsTT	p.Thr698Ile	p.T698I	ENST00000382592	NM_014572.2	698	aCC/aTT																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631561	28631561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	173	686	0	ENST00000241453.7:c.407C>T	p.Thr136Ile	p.T136I	ENST00000241453	NM_004119.2	136	aCc/aTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28886200	28886200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	80	795	0	ENST00000282397.4:c.3422C>T	p.Pro1141Leu	p.P1141L	ENST00000282397	NM_002019.4	1141	cCa/cTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906817	32906817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	110	999	1	ENST00000380152.3:c.1202C>T	p.Ser401Leu	p.S401L	ENST00000380152		401	tCa/tTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915300	32915300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	72	898	1	ENST00000380152.3:c.6808G>A	p.Gly2270Arg	p.G2270R	ENST00000380152		2270	Gga/Aga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435681	110435681	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	112	768	0	ENST00000375856.3:c.2720A>C	p.Tyr907Ser	p.Y907S	ENST00000375856	NM_003749.2	907	tAc/tCc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987194	36987194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	133	893	0	ENST00000354822.5:c.495G>A	p.Met165Ile	p.M165I	ENST00000354822	NM_001079668.2	165	atG/atA																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606081	81606081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	318	857	1	ENST00000298171.2:c.751G>A	p.Glu251Lys	p.E251K	ENST00000298171	NM_000369.2	251	Gaa/Aaa																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023123	33023123	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	85	566	1	ENST00000300177.4:c.232C>T	p.Gln78Ter	p.Q78*	ENST00000300177	NM_001191322.1	78	Caa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041917	42041917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	92	687	1	ENST00000219905.7:c.6112C>T	p.Pro2038Ser	p.P2038S	ENST00000219905	NM_001164273.1	2038	Cca/Tca																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483966	88483966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	74	665	0	ENST00000360948.2:c.1604G>A	p.Arg535Lys	p.R535K	ENST00000360948	NM_001012338.2	535	aGg/aAg																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096205	2096205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	128	985	0	ENST00000219066.1:c.302C>T	p.Ala101Val	p.A101V	ENST00000219066	NM_002528.5	101	gCc/gTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2100422	2100422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	142	850	0	ENST00000219476.3:c.160C>T	p.Leu54Phe	p.L54F	ENST00000219476	NM_000548.3	54	Ctc/Ttc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134554	2134554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	318	888	0	ENST00000219476.3:c.4331C>T	p.Pro1444Leu	p.P1444L	ENST00000219476	NM_000548.3	1444	cCc/cTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633174	3633174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	329	1081	0	ENST00000294008.3:c.5077G>A	p.Asp1693Asn	p.D1693N	ENST00000294008	NM_032444.2	1693	Gac/Aac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808023	3808024	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	179	543	3	ENST00000262367.5:c.3395_3396delinsTT	p.Pro1132Leu	p.P1132L	ENST00000262367	NM_004380.2	1132	cCC/cTT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934597	9934597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	134	744	0	ENST00000330684.3:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000330684	NM_001134407.1	520	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992447	72992447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	165	1058	1	ENST00000268489.5:c.1598C>T	p.Ser533Phe	p.S533F	ENST00000268489	NM_006885.3	533	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993020	72993020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	166	956	3	ENST00000268489.5:c.1025C>T	p.Pro342Leu	p.P342L	ENST00000268489	NM_006885.3	342	cCa/cTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346759	89346759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	44	463	0	ENST00000301030.4:c.6191C>T	p.Ser2064Phe	p.S2064F	ENST00000301030	NM_001256183.1	2064	tCc/tTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351351	89351351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	133	857	0	ENST00000301030.4:c.1599del	p.Lys533AsnfsTer41	p.K533Nfs*41	ENST00000301030	NM_001256183.1	533	aaG/aa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7976569	7976569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	260	731	1	ENST00000319144.4:c.1823G>A	p.Gly608Glu	p.G608E	ENST00000319144	NM_001139.2	608	gGg/gAg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40872452	40872452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	321	839	0	ENST00000428826.2:c.503C>T	p.Ser168Phe	p.S168F	ENST00000428826		168	tCc/tTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435159	56435159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	154	664	0	ENST00000407977.2:c.1978C>T	p.Pro660Ser	p.P660S	ENST00000407977		660	Ccc/Tcc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45422892	45422892	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	67	328	0	ENST00000262160.6:c.236G>A	p.Ser79Asn	p.S79N	ENST00000262160	NM_005901.5	79	aGc/aAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222744	5222744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	125	721	0	ENST00000357368.4:c.3059C>T	p.Pro1020Leu	p.P1020L	ENST00000357368	NM_002850.3	1020	cCc/cTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5245939	5245939	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	155	944	1	ENST00000357368.4:c.836T>G	p.Met279Arg	p.M279R	ENST00000357368	NM_002850.3	279	aTg/aGg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10270742	10270742	+	splice_region_variant,intron_variant	Splice_Region	DEL	G	G	-			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	48	379	3	ENST00000340748.4:c.996-3del		p.X332_splice	ENST00000340748		332																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281506	15281506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	209	781	0	ENST00000263388.2:c.4867C>T	p.Pro1623Ser	p.P1623S	ENST00000263388	NM_000435.2	1623	Ccg/Tcg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376284	15376284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	108	645	0	ENST00000263377.2:c.730C>T	p.Pro244Ser	p.P244S	ENST00000263377	NM_058243.2	244	Ccc/Tcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216515	36216515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	126	875	0	ENST00000222270.7:c.3778C>T	p.Arg1260Cys	p.R1260C	ENST00000222270	NM_014727.1	1260	Cgt/Tgt																																																																														
CIC	23152	MSKCC	GRCh37	19	42794418	42794418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	150	1246	1	ENST00000575354.2:c.1498C>T	p.Arg500Cys	p.R500C	ENST00000575354	NM_015125.3	500	Cgt/Tgt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905125	50905125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	135	1029	0	ENST00000440232.2:c.407C>T	p.Ser136Phe	p.S136F	ENST00000440232	NM_002691.3	136	tCt/tTt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905566	50905566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	153	871	2	ENST00000440232.2:c.694C>T	p.Arg232Cys	p.R232C	ENST00000440232	NM_002691.3	232	Cgt/Tgt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39285848	39285848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	96	769	0	ENST00000402219.2:c.311C>T	p.Ser104Phe	p.S104F	ENST00000402219	NM_005633.3	104	tCt/tTt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99136609	99136609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	194	554	0	ENST00000074304.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000074304	NM_001134224.1	33	tCt/tTt																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046353	128046353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	102	663	0	ENST00000285398.2:c.910C>T	p.Pro304Ser	p.P304S	ENST00000285398	NM_000122.1	304	Cct/Tct																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634848	158634848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	132	359	1	ENST00000263640.3:c.338C>T	p.Ser113Phe	p.S113F	ENST00000263640	NM_001105.4	113	tCc/tTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198260816	198260816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	87	926	0	ENST00000335508.6:c.3503C>T	p.Ala1168Val	p.A1168V	ENST00000335508	NM_012433.2	1168	gCc/gTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426678	212426678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	145	703	0	ENST00000342788.4:c.2437G>A	p.Asp813Asn	p.D813N	ENST00000342788	NM_005235.2	813	Gat/Aat																																																																														
SRC	6714	MSKCC	GRCh37	20	36030002	36030002	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	102	654	0	ENST00000358208.4:c.1040-3C>T		p.X347_splice	ENST00000358208		347																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40757468	40757468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	128	693	1	ENST00000373198.4:c.2830G>A	p.Asp944Asn	p.D944N	ENST00000373198	NM_133170.3	944	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100906	41100906	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	77	611	0	ENST00000373198.4:c.1450G>A	p.Val484Ile	p.V484I	ENST00000373198	NM_133170.3	484	Gtt/Att																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101088	41101088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	186	658	1	ENST00000373198.4:c.1268C>T	p.Thr423Ile	p.T423I	ENST00000373198	NM_133170.3	423	aCc/aTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101131	41101131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	89	691	1	ENST00000373198.4:c.1225C>T	p.Pro409Ser	p.P409S	ENST00000373198	NM_133170.3	409	Ccc/Tcc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755752	39755752	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	151	502	0	ENST00000288319.7:c.1013A>C	p.Glu338Ala	p.E338A	ENST00000288319	NM_182918.3	338	gAg/gCg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12475621	12475621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	112	612	0	ENST00000287820.6:c.1495G>A	p.Glu499Lys	p.E499K	ENST00000287820	NM_015869.4	499	Gag/Aag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713315	30713315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	150	500	0	ENST00000359013.4:c.715G>C	p.Glu239Gln	p.E239Q	ENST00000359013	NM_001024847.2	239	Gag/Cag																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180354	38180354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	103	857	0	ENST00000396334.3:c.202G>A	p.Asp68Asn	p.D68N	ENST00000396334	NM_002468.4	68	Gac/Aac																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181442	38181442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	78	525	0	ENST00000396334.3:c.455C>T	p.Pro152Leu	p.P152L	ENST00000396334	NM_002468.4	152	cCa/cTa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967251	134967251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	110	686	1	ENST00000398015.3:c.2590G>A	p.Asp864Asn	p.D864N	ENST00000398015	NM_004441.4	864	Gac/Aac																																																																														
ATR	545	MSKCC	GRCh37	3	142279193	142279193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	89	735	0	ENST00000350721.4:c.1453C>T	p.Pro485Ser	p.P485S	ENST00000350721	NM_001184.3	485	Cct/Tct																																																																														
ATR	545	MSKCC	GRCh37	3	142279219	142279219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	86	724	1	ENST00000350721.4:c.1427C>T	p.Ser476Phe	p.S476F	ENST00000350721	NM_001184.3	476	tCc/tTc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146488	185146488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	54	591	0	ENST00000265026.3:c.119C>T	p.Pro40Leu	p.P40L	ENST00000265026	NM_004721.4	40	cCc/cTc																																																																														
BCL6	604	MSKCC	GRCh37	3	187440362	187440362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	196	599	0	ENST00000232014.4:c.2005C>T	p.His669Tyr	p.H669Y	ENST00000232014	NM_001130845.1	669	Cac/Tac																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957879	1957879	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	323	589	0	ENST00000382891.5:c.2845C>T	p.Gln949Ter	p.Q949*	ENST00000382891	NM_133335.3	949	Cag/Tag																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747912	41747912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	110	704	1	ENST00000226382.2:c.857C>T	p.Ser286Leu	p.S286L	ENST00000226382	NM_003924.3	286	tCg/tTg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146605	55146605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	328	785	4	ENST00000257290.5:c.2279C>T	p.Ser760Leu	p.S760L	ENST00000257290	NM_006206.4	760	tCa/tTa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593613	55593613	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	290	685	0	ENST00000288135.5:c.1679T>G	p.Val560Gly	p.V560G	ENST00000288135	NM_000222.2	560	gTt/gGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55595563	55595563	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	197	498	0	ENST00000288135.5:c.2053A>C	p.Lys685Gln	p.K685Q	ENST00000288135	NM_000222.2	685	Aaa/Caa																																																																														
KDR	3791	MSKCC	GRCh37	4	55984968	55984968	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	94	486	0	ENST00000263923.4:c.162-1G>A		p.X54_splice	ENST00000263923	NM_002253.2	54																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356154	66356154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	301	646	0	ENST00000273854.3:c.1343C>A	p.Ser448Tyr	p.S448Y	ENST00000273854	NM_004439.5	448	tCc/tAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361181	66361181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	32	518	0	ENST00000273854.3:c.991G>A	p.Glu331Lys	p.E331K	ENST00000273854	NM_004439.5	331	Gaa/Aaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467497	66467497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	210	369	0	ENST00000273854.3:c.772G>A	p.Val258Met	p.V258M	ENST00000273854	NM_004439.5	258	Gtg/Atg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467499	66467499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	205	370	0	ENST00000273854.3:c.770A>G	p.Glu257Gly	p.E257G	ENST00000273854	NM_004439.5	257	gAa/gGa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541486	187541486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	289	513	0	ENST00000441802.2:c.6254C>T	p.Pro2085Leu	p.P2085L	ENST00000441802	NM_005245.3	2085	cCc/cTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554882	187554882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	106	480	0	ENST00000441802.2:c.4279C>T	p.Leu1427Phe	p.L1427F	ENST00000441802	NM_005245.3	1427	Ctc/Ttc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628376	187628376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	428	799	1	ENST00000441802.2:c.2606C>T	p.Ser869Leu	p.S869L	ENST00000441802	NM_005245.3	869	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295216	1295216	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs35733142		P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	68	426	0				ENST00000310581	NM_198253.2																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31424551	31424551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	155	943	0	ENST00000344624.3:c.3244C>T	p.Pro1082Ser	p.P1082S	ENST00000344624		1082	Cct/Tct																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876381	35876382	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	163	712	2	ENST00000303115.3:c.1173_1174delinsAA	p.Glu392Lys	p.E392K	ENST00000303115	NM_002185.3	391	agGGag/agAAag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876533	35876533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	207	788	0	ENST00000303115.3:c.1325G>A	p.Gly442Glu	p.G442E	ENST00000303115	NM_002185.3	442	gGa/gAa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950392	38950393	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	70	530	2	ENST00000357387.3:c.3557_3558delinsTT	p.Thr1186Ile	p.T1186I	ENST00000357387	NM_152756.3	1186	aCC/aTT																																																																														
MSH3	4437	MSKCC	GRCh37	5	80071535	80071535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	70	481	1	ENST00000265081.6:c.2276C>T	p.Ser759Phe	p.S759F	ENST00000265081	NM_002439.4	759	tCt/tTt																																																																														
APC	324	MSKCC	GRCh37	5	112177569	112177569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	124	553	0	ENST00000257430.4:c.6278C>T	p.Ser2093Phe	p.S2093F	ENST00000257430	NM_000038.5	2093	tCc/tTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149447873	149447873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	158	763	2	ENST00000286301.3:c.1531G>A	p.Asp511Asn	p.D511N	ENST00000286301	NM_005211.3	511	Gat/Aat																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497247	149497247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	227	831	1	ENST00000261799.4:c.3071C>T	p.Pro1024Leu	p.P1024L	ENST00000261799	NM_002609.3	1024	cCc/cTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562973	176562973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	122	802	2	ENST00000439151.2:c.869G>A	p.Gly290Glu	p.G290E	ENST00000439151	NM_022455.4	290	gGa/gAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057603	180057603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	273	828	0	ENST00000261937.6:c.352G>A	p.Ala118Thr	p.A118T	ENST00000261937	NM_182925.4	118	Gca/Aca																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910687	29910687	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	51	1012	0	ENST00000376809.5:c.227T>G	p.Ile76Arg	p.I76R	ENST00000376809	NM_002116.7	76	aTa/aGa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30682885	30682885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	162	847	3	ENST00000376406.3:c.68C>T	p.Ser23Phe	p.S23F	ENST00000376406	NM_014641.2	23	tCc/tTc																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89791019	89791019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	37	142	0	ENST00000336032.3:c.406G>A	p.Gly136Arg	p.G136R	ENST00000336032	NM_006813.2	136	Gga/Aga																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553260	106553260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	230	776	1	ENST00000369096.4:c.1225C>T	p.His409Tyr	p.H409Y	ENST00000369096	NM_001198.3	409	Cac/Tac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638338	117638338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	114	653	2	ENST00000368508.3:c.6103C>T	p.Leu2035Phe	p.L2035F	ENST00000368508	NM_002944.2	2035	Ctt/Ttt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678977	117678977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	62	546	0	ENST00000368508.3:c.3844C>T	p.Pro1282Ser	p.P1282S	ENST00000368508	NM_002944.2	1282	Cct/Tct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683963	117683963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	76	818	0	ENST00000368508.3:c.3184G>A	p.Glu1062Lys	p.E1062K	ENST00000368508	NM_002944.2	1062	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706872	117706872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	212	643	0	ENST00000368508.3:c.2278C>T	p.Leu760Phe	p.L760F	ENST00000368508	NM_002944.2	760	Ctc/Ttc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710542	117710542	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	44	288	0	ENST00000368508.3:c.1730G>A	p.Trp577Ter	p.W577*	ENST00000368508	NM_002944.2	577	tGg/tAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710638	117710638	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	76	508	0	ENST00000368508.3:c.1634T>A	p.Leu545Ter	p.L545*	ENST00000368508	NM_002944.2	545	tTg/tAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710693	117710693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	81	485	0	ENST00000368508.3:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000368508	NM_002944.2	527	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724380	117724380	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	146	809	0	ENST00000368508.3:c.499C>T	p.Arg167Ter	p.R167*	ENST00000368508	NM_002944.2	167	Cga/Tga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004321	150004321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	79	596	1	ENST00000253339.5:c.1904C>T	p.Ser635Phe	p.S635F	ENST00000253339		635	tCt/tTt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468282	50468282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	132	689	1	ENST00000331340.3:c.1517C>T	p.Ser506Leu	p.S506L	ENST00000331340	NM_006060.4	506	tCg/tTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81346551	81346551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	57	448	0	ENST00000222390.5:c.1402C>T	p.Arg468Cys	p.R468C	ENST00000222390	NM_000601.4	468	Cgt/Tgt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508918	106508918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	71	466	0	ENST00000359195.3:c.912C>G	p.His304Gln	p.H304Q	ENST00000359195	NM_002649.2	304	caC/caG																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509810	106509810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	134	723	1	ENST00000359195.3:c.1804G>A	p.Glu602Lys	p.E602K	ENST00000359195	NM_002649.2	602	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526648	106526648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	126	701	1	ENST00000359195.3:c.2941G>A	p.Glu981Lys	p.E981K	ENST00000359195	NM_002649.2	981	Gag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116414965	116414965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	428	975	1	ENST00000397752.3:c.3059C>T	p.Ser1020Leu	p.S1020L	ENST00000397752	NM_000245.2	1020	tCa/tTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140477831	140477831	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	82	784	0	ENST00000288602.6:c.1477C>T	p.Gln493Ter	p.Q493*	ENST00000288602	NM_004333.4	493	Cag/Tag																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346137	152346138	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	216	752	1	ENST00000359321.1:c.432_433delinsTT	p.Leu145Phe	p.L145F	ENST00000359321	NM_005431.1	144	tgCCtt/tgTTtt																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346368	152346368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	175	728	0	ENST00000359321.1:c.202C>T	p.Pro68Ser	p.P68S	ENST00000359321	NM_005431.1	68	Ccc/Tcc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370816	55370816	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	70	509	0	ENST00000297316.4:c.121delG	p.Asp41ThrfsTer2	p.D41Tfs*2	ENST00000297316	NM_022454.3	40	Ggg/gg																																																																														
LYN	4067	MSKCC	GRCh37	8	56863046	56863046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	181	883	2	ENST00000519728.1:c.313C>T	p.Leu105Phe	p.L105F	ENST00000519728	NM_002350.3	105	Ctt/Ttt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005857	69005857	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	123	679	0	ENST00000288368.4:c.2268G>A	p.Trp756Ter	p.W756*	ENST00000288368	NM_024870.2	756	tgG/tgA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020555	69020555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	170	706	1	ENST00000288368.4:c.2927C>T	p.Ser976Phe	p.S976F	ENST00000288368	NM_024870.2	976	tCt/tTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129904	69129904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	157	431	0	ENST00000288368.4:c.4658G>A	p.Gly1553Glu	p.G1553E	ENST00000288368	NM_024870.2	1553	gGa/gAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69143593	69143593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	249	583	0	ENST00000288368.4:c.4801C>T	p.Pro1601Ser	p.P1601S	ENST00000288368	NM_024870.2	1601	Ccc/Tcc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980731	70980731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	190	907	0	ENST00000276594.2:c.737C>T	p.Ser246Phe	p.S246F	ENST00000276594	NM_024504.3	246	tCc/tTc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141572694	141572694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	102	638	0	ENST00000220592.5:c.376C>T	p.Arg126Cys	p.R126C	ENST00000220592	NM_012154.3	126	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460499	8460499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	173	774	0	ENST00000356435.5:c.3787G>A	p.Glu1263Lys	p.E1263K	ENST00000356435		1263	Gaa/Aaa																																																																														
TEK	7010	MSKCC	GRCh37	9	27172652	27172652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	113	734	0	ENST00000380036.4:c.667C>T	p.Leu223Phe	p.L223F	ENST00000380036	NM_000459.3	223	Ctc/Ttc																																																																														
TEK	7010	MSKCC	GRCh37	9	27202829	27202829	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	86	683	0	ENST00000380036.4:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000380036	NM_000459.3	641	Caa/Taa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285785	87285785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	104	664	0	ENST00000277120.3:c.122C>T	p.Ser41Phe	p.S41F	ENST00000277120		41	tCt/tTt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98248088	98248088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	123	780	0	ENST00000331920.6:c.463C>T	p.Pro155Ser	p.P155S	ENST00000331920	NM_000264.3	155	Cct/Tct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390653	139390653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	160	862	1	ENST00000277541.6:c.7538C>T	p.Ser2513Phe	p.S2513F	ENST00000277541	NM_017617.3	2513	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393590	139393590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	126	799	0	ENST00000277541.6:c.6056C>T	p.Ala2019Val	p.A2019V	ENST00000277541	NM_017617.3	2019	gCc/gTc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139804390	139804390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	119	973	1	ENST00000247668.2:c.547C>T	p.Pro183Ser	p.P183S	ENST00000247668	NM_021138.3	183	Ccc/Tcc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932974	39932974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	223	591	1	ENST00000378444.4:c.1625C>T	p.Ser542Leu	p.S542L	ENST00000378444	NM_001123385.1	542	tCa/tTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411992	63411992	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	64	713	0	ENST00000330258.3:c.1175A>T	p.Glu392Val	p.E392V	ENST00000330258	NM_152424.3	392	gAg/gTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412088	63412088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	283	1043	0	ENST00000330258.3:c.1079C>T	p.Ser360Phe	p.S360F	ENST00000330258	NM_152424.3	360	tCc/tTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412448	63412448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	130	965	1	ENST00000330258.3:c.719C>T	p.Ser240Phe	p.S240F	ENST00000330258	NM_152424.3	240	tCt/tTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70349186	70349186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	92	640	1	ENST00000374080.3:c.3598C>T	p.Arg1200Cys	p.R1200C	ENST00000374080		1200	Cgc/Tgc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349538	70349538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	217	575	0	ENST00000374080.3:c.3700G>A	p.Glu1234Lys	p.E1234K	ENST00000374080		1234	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70352994	70352994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	64	808	0	ENST00000374080.3:c.4549G>A	p.Asp1517Asn	p.D1517N	ENST00000374080		1517	Gac/Aac																																																																														
STAG2	10735	MSKCC	GRCh37	X	123156381	123156381	+	splice_region_variant,5_prime_UTR_variant	Splice_Region	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	14	168	0	ENST00000218089.9:c.-97G>A		p.X33_splice	ENST00000218089	NM_001042749.1	33																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195717	123195717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	130	876	0	ENST00000218089.9:c.1631G>A	p.Gly544Glu	p.G544E	ENST00000218089	NM_001042749.1	544	gGa/gAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123227896	123227896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	61	471	0	ENST00000218089.9:c.3607G>A	p.Asp1203Asn	p.D1203N	ENST00000218089	NM_001042749.1	1203	Gat/Aat																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227785	53227786	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0019263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	281	894	0	ENST00000375401.3:c.2402_2403delinsT	p.Ala801ValfsTer15	p.A801Vfs*15	ENST00000375401	NM_004187.3	801	gCC/gT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	365	751	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	147	493	0				ENST00000310581	NM_198253.2																																																																																
PTEN	5728	MSKCC	GRCh37	10	89717715	89717715	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	98	737	0	ENST00000371953.3:c.740T>A	p.Leu247Ter	p.L247*	ENST00000371953	NM_000314.4	247	tTa/tAa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517559	176517571	+	frameshift_variant	Frame_Shift_Del	DEL	AGATTGCCAGCTT	AGATTGCCAGCTT	-			P-0020691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	131	1030	0	ENST00000292408.4:c.260_272del	p.Glu87AlafsTer17	p.E87Afs*17	ENST00000292408	NM_213647.1	87	gAGATTGCCAGCTTc/gc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	45	822	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
TP63	8626	MSKCC	GRCh37	3	189455576	189455576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	41	711	1	ENST00000264731.3:c.110G>A	p.Arg37Gln	p.R37Q	ENST00000264731	NM_003722.4	37	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	25	335	3				ENST00000310581	NM_198253.2																																																																																
MST1R	4486	MSKCC	GRCh37	3	49936310	49936310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	30	579	0	ENST00000296474.3:c.1538C>T	p.Ser513Phe	p.S513F	ENST00000296474	NM_002447.2	513	tCt/tTt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940141	71940141	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	62	866	0	ENST00000298229.2:c.526A>C	p.Asn176His	p.N176H	ENST00000298229	NM_001567.3	176	Aat/Cat																																																																														
MRE11A	0	MSKCC	GRCh37	11	94209566	94209566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	37	451	0	ENST00000323929.3:c.548C>T	p.Ser183Phe	p.S183F	ENST00000323929	NM_005591.3	183	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424971	49424971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	45	816	0	ENST00000301067.7:c.13517C>T	p.Pro4506Leu	p.P4506L	ENST00000301067	NM_003482.3	4506	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	50	1049	0	ENST00000269305.4:c.450_451insT	p.Pro151SerfsTer30	p.P151Sfs*30	ENST00000269305	NM_001126112.2	150	-/T																																																																														
CIC	23152	MSKCC	GRCh37	19	42795512	42795512	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	48	956	10	ENST00000575354.2:c.2592C>G	p.Phe864Leu	p.F864L	ENST00000575354	NM_015125.3	864	ttC/ttG																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128051208	128051208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	54	861	2	ENST00000285398.2:c.115C>T	p.Pro39Ser	p.P39S	ENST00000285398	NM_000122.1	39	Ccc/Tcc																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30253762	30253762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	35	574	0	ENST00000307677.4:c.692G>T	p.Ser231Ile	p.S231I	ENST00000307677	NM_138578.1	231	aGt/aTt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176719091	176719091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	20	353	0	ENST00000439151.2:c.6395C>T	p.Ser2132Phe	p.S2132F	ENST00000439151	NM_022455.4	2132	tCc/tTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730107	41730107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	31	532	0	ENST00000242208.4:c.422C>T	p.Ser141Phe	p.S141F	ENST00000242208	NM_002192.2	141	tCc/tTc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978497	70978497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	25	524	0	ENST00000276594.2:c.1156G>A	p.Gly386Arg	p.G386R	ENST00000276594	NM_024504.3	386	Ggg/Agg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	375	599	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	320	432	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	528	808	2	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518437	204518437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201947927		P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	200	531	0	ENST00000367182.3:c.1100C>T	p.Ser367Leu	p.S367L	ENST00000367182	NM_001278516.1	367	tCg/tTg																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	703	1001	1	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434062	49434063	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	453	857	2	ENST00000301067.7:c.7490_7491delinsAT	p.Ala2497Asp	p.A2497D	ENST00000301067	NM_003482.3	2497	gCC/gAT																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78866553	78866553	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145440027		P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	628	863	0	ENST00000306801.3:c.2126G>A	p.Arg709Gln	p.R709Q	ENST00000306801	NM_020761.2	709	cGa/cAa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262932	46262932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs6094756		P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	465	689	0	ENST00000371998.3:c.1105C>T	p.Leu369Phe	p.L369F	ENST00000371998		369	Ctt/Ttt																																																																														
TET2	54790	MSKCC	GRCh37	4	106158175	106158175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	346	525	0	ENST00000380013.4:c.3076G>A	p.Glu1026Lys	p.E1026K	ENST00000380013	NM_001127208.2	1026	Gag/Aag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93973581	93973581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	322	554	0	ENST00000369303.4:c.1795C>T	p.His599Tyr	p.H599Y	ENST00000369303	NM_004440.3	599	Cat/Tat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686904	117686904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	134	371	1	ENST00000368508.3:c.2813G>A	p.Gly938Glu	p.G938E	ENST00000368508	NM_002944.2	938	gGg/gAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500990	8500990	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	194	547	0	ENST00000356435.5:c.1892A>C	p.Gln631Pro	p.Q631P	ENST00000356435		631	cAa/cCa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	16	570	0	ENST00000304494.5:c.188T>C	p.Leu63Pro	p.L63P	ENST00000304494	NM_000077.4	63	cTg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	16	570	0	ENST00000304494.5:c.188T>C	p.Leu63Pro	p.L63P	ENST00000304494	NM_000077.4	63	cTg/cCg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224562	123224562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	268	734	0	ENST00000218089.9:c.3415del	p.Met1139Ter	p.M1139*	ENST00000218089	NM_001042749.1	1139	Atg/tg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	280	805	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1693	36	946	1	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	125	701	0	ENST00000288135.5:c.2466T>G	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaG																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7989402	7989402	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150641093		P-0022907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	444	1103	0	ENST00000319144.4:c.284G>A	p.Arg95His	p.R95H	ENST00000319144	NM_001139.2	95	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112137020	112137020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	51	587	0	ENST00000257430.4:c.774G>C	p.Glu258Asp	p.E258D	ENST00000257430	NM_000038.5	258	gaG/gaC																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513181	106513181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	315	388	0	ENST00000359195.3:c.2085G>T	p.Leu695Phe	p.L695F	ENST00000359195	NM_002649.2	695	ttG/ttT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202890	16202890	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	33	393	0	ENST00000375759.3:c.598C>T	p.Arg200Ter	p.R200*	ENST00000375759	NM_015001.2	200	Cga/Tga																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699447	117699447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	29	378	0	ENST00000369458.3:c.194C>T	p.Ser65Phe	p.S65F	ENST00000369458	NM_024626.3	65	tCt/tTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862826	9862826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	45	388	1	ENST00000330684.3:c.2477C>T	p.Ala826Val	p.A826V	ENST00000330684	NM_001134407.1	826	gCc/gTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244004	41244004	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	37	446	0	ENST00000357654.3:c.3544C>T	p.Gln1182Ter	p.Q1182*	ENST00000357654	NM_007294.3	1182	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827928	40827928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	60	395	0	ENST00000373198.4:c.2500C>T	p.Arg834Cys	p.R834C	ENST00000373198	NM_133170.3	834	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	29	203	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	61	345	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	21	259	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	119	484	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	83	432	0	ENST00000269305.4:c.724T>G	p.Cys242Gly	p.C242G	ENST00000269305	NM_001126112.2	242	Tgc/Ggc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151625	55151625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	60	398	0	ENST00000257290.5:c.2411G>A	p.Arg804Gln	p.R804Q	ENST00000257290	NM_006206.4	804	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857197	9857197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	23	320	0	ENST00000330684.3:c.4204C>T	p.Arg1402Trp	p.R1402W	ENST00000330684	NM_001134407.1	1402	Cgg/Tgg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912865	50912865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	26	485	0	ENST00000440232.2:c.2096C>T	p.Ser699Phe	p.S699F	ENST00000440232	NM_002691.3	699	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222978	5222978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	52	416	0	ENST00000357368.4:c.2825C>T	p.Ser942Leu	p.S942L	ENST00000357368	NM_002850.3	942	tCg/tTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045030	47045030	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	71	557	0	ENST00000329236.7:c.2121+1G>A		p.X707_splice	ENST00000329236	NM_001204466.1	707																																																																															
CDH1	999	MSKCC	GRCh37	16	68849479	68849479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	75	464	0	ENST00000261769.5:c.1382C>T	p.Pro461Leu	p.P461L	ENST00000261769	NM_004360.3	461	cCt/cTt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178155	56178155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	40	275	0	ENST00000399503.3:c.3128C>T	p.Ser1043Phe	p.S1043F	ENST00000399503	NM_005921.1	1043	tCc/tTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81374365	81374365	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	50	308	0	ENST00000222390.5:c.697C>T	p.Gln233Ter	p.Q233*	ENST00000222390	NM_000601.4	233	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260838	16260895	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCCAGTGAATGTTCTCACCACTCCAGTGAACGCCACGGTGGGCACAGTGAATGCC	GGGGCCAGTGAATGTTCTCACCACTCCAGTGAACGCCACGGTGGGCACAGTGAATGCC	TGT			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	42	364	2	ENST00000375759.3:c.8103_8160delinsTGT	p.Gly2702ValfsTer13	p.G2702Vfs*13	ENST00000375759	NM_015001.2	2701	acGGGGCCAGTGAATGTTCTCACCACTCCAGTGAACGCCACGGTGGGCACAGTGAATGCC/acTGT																																																																														
POLE	5426	MSKCC	GRCh37	12	133226279	133226279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	38	411	0	ENST00000320574.5:c.3779C>T	p.Ala1260Val	p.A1260V	ENST00000320574	NM_006231.2	1260	gCc/gTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42028502	42028502	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	49	325	1	ENST00000219905.7:c.4040A>T	p.Asp1347Val	p.D1347V	ENST00000219905	NM_001164273.1	1347	gAt/gTt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640979	3640979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	76	504	0	ENST00000294008.3:c.2660C>T	p.Ser887Phe	p.S887F	ENST00000294008	NM_032444.2	887	tCt/tTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589833	212589833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	57	431	0	ENST00000342788.4:c.709G>A	p.Gly237Ser	p.G237S	ENST00000342788	NM_005235.2	237	Ggc/Agc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55130094	55130094	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	27	351	0	ENST00000257290.5:c.628G>A	p.Ala210Thr	p.A210T	ENST00000257290	NM_006206.4	210	Gca/Aca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55270265	55270266	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0023794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	33	488	1	ENST00000275493.2:c.3218_3219delinsAT	p.Pro1073His	p.P1073H	ENST00000275493	NM_005228.3	1073	cCC/cAT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	424	614	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	95	431	0				ENST00000310581	NM_198253.2																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8341914	8341914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	150	704	0	ENST00000356435.5:c.4726G>A	p.Glu1576Lys	p.E1576K	ENST00000356435		1576	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408885	41408885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	137	592	1	ENST00000373198.4:c.541G>A	p.Glu181Lys	p.E181K	ENST00000373198	NM_133170.3	181	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812242	212812242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	349	503	0	ENST00000342788.4:c.334G>A	p.Glu112Lys	p.E112K	ENST00000342788	NM_005235.2	112	Gag/Aag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021614	31021614	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	156	628	0	ENST00000375687.4:c.1613A>G	p.Lys538Arg	p.K538R	ENST00000375687	NM_015338.5	538	aAg/aGg																																																																														
ATR	545	MSKCC	GRCh37	3	142241623	142241623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	170	798	0	ENST00000350721.4:c.4213C>T	p.Leu1405Phe	p.L1405F	ENST00000350721	NM_001184.3	1405	Ctt/Ttt																																																																														
TP63	8626	MSKCC	GRCh37	3	189455559	189455559	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	275	806	1	ENST00000264731.3:c.93G>A	p.Trp31Ter	p.W31*	ENST00000264731	NM_003722.4	31	tgG/tgA																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	166	433	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	198	544	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	146	302	0	ENST00000257430.4:c.4348C>G	p.Arg1450Gly	p.R1450G	ENST00000257430	NM_000038.5	1450	Cga/Gga																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	102	525	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	296	638	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843495	3843495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	144	638	0	ENST00000262367.5:c.1108C>G	p.Arg370Gly	p.R370G	ENST00000262367	NM_004380.2	370	Cga/Gga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	570	522	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	177	306	0				ENST00000310581	NM_198253.2																																																																																
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	461	487	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
MET	4233	MSKCC	GRCh37	7	116397762	116397762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	637	599	1	ENST00000397752.3:c.2036G>A	p.Gly679Glu	p.G679E	ENST00000397752	NM_000245.2	679	gGa/gAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42000018	42000018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	339	692	0	ENST00000219905.7:c.2281C>T	p.Pro761Ser	p.P761S	ENST00000219905	NM_001164273.1	761	Cct/Tct																																																																														
JAK1	3716	MSKCC	GRCh37	1	65312344	65312344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	36	548	0	ENST00000342505.4:c.1975C>T	p.Arg659Cys	p.R659C	ENST00000342505	NM_002227.2	659	Cgc/Tgc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137253	64137253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	214	542	1	ENST00000334205.4:c.1685C>T	p.Pro562Leu	p.P562L	ENST00000334205	NM_003942.2	562	cCc/cTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346817	89346817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	140	303	0	ENST00000301030.4:c.6133C>T	p.Pro2045Ser	p.P2045S	ENST00000301030	NM_001256183.1	2045	Ccc/Tcc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980349	7980349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	260	447	0	ENST00000319144.4:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000319144	NM_001139.2	412	Gcc/Acc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209110138	209110138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	237	503	0	ENST00000345146.2:c.425C>T	p.Thr142Ile	p.T142I	ENST00000345146	NM_005896.2	142	aCt/aTt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729981	30729981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	199	387	0	ENST00000359013.4:c.1577C>T	p.Pro526Leu	p.P526L	ENST00000359013	NM_001024847.2	526	cCc/cTc																																																																														
MITF	4286	MSKCC	GRCh37	3	70014113	70014113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	272	488	2	ENST00000352241.4:c.1277G>T	p.Ser426Ile	p.S426I	ENST00000352241	NM_198159.2	426	aGc/aTc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004961	150004961	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	326	478	0	ENST00000253339.5:c.1264T>C	p.Tyr422His	p.Y422H	ENST00000253339		422	Tat/Cat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151935825	151935825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4	16	6	0	ENST00000262189.6:c.2619del	p.Gln873HisfsTer40	p.Q873Hfs*40	ENST00000262189	NM_170606.2	873	caG/ca																																																																														
DICER1	23405	MSKCC	GRCh37	14	95596510	95596510	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	327	301	0	ENST00000343455.3:c.458A>G	p.Tyr153Cys	p.Y153C	ENST00000343455	NM_177438.2	153	tAt/tGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	333	565	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	59	340	0				ENST00000310581	NM_198253.2																																																																																
MAP2K1	5604	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			994	294	726	1	ENST00000307102.5:c.371C>T	p.Pro124Leu	p.P124L	ENST00000307102	NM_002755.3	124	cCg/cTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112250	115112250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			203	93	209	1	ENST00000257566.3:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000257566	NM_016569.3	497	cCc/cTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566827	212566827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	88	323	0	ENST00000342788.4:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000342788	NM_005235.2	452	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100079	27100079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			655	128	617	0	ENST00000324856.7:c.3875C>T	p.Pro1292Leu	p.P1292L	ENST00000324856	NM_006015.4	1292	cCt/cTt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86686692	86686692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	73	470	1	ENST00000274376.6:c.3136G>A	p.Val1046Ile	p.V1046I	ENST00000274376	NM_002890.2	1046	Gtc/Atc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622481	28622481	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			799	224	628	0	ENST00000241453.7:c.1136T>G	p.Ile379Ser	p.I379S	ENST00000241453	NM_004119.2	379	aTc/aGc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966430	25966430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			886	271	652	1	ENST00000435504.4:c.2776C>T	p.Leu926Phe	p.L926F	ENST00000435504		926	Ctt/Ttt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024379	31024380	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			713	170	647	3	ENST00000375687.4:c.3864_3865delinsGT	p.Arg1289Trp	p.R1289W	ENST00000375687	NM_015338.5	1288	ggTCgg/ggGTgg																																																																														
SRC	6714	MSKCC	GRCh37	20	36030005	36030005	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			883	77	710	0	ENST00000358208.4:c.1040G>A	p.Gly347Glu	p.G347E	ENST00000358208		347	gGg/gAg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71161764	71161764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	139	401	0	ENST00000318789.4:c.205C>T	p.Leu69Phe	p.L69F	ENST00000318789	NM_032682.5	69	Ctt/Ttt																																																																														
TERT	7015	MSKCC	GRCh37	5	1255482	1255482	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	117	764	2	ENST00000310581.5:c.3077G>A	p.Trp1026Ter	p.W1026*	ENST00000310581	NM_198253.2	1026	tGg/tAg																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140886	37140886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			760	74	536	0	ENST00000373509.5:c.722C>T	p.Pro241Leu	p.P241L	ENST00000373509	NM_002648.3	241	cCt/cTt																																																																														
FYN	2534	MSKCC	GRCh37	6	111995822	111995822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			614	43	412	0	ENST00000368678.4:c.1276C>T	p.Pro426Ser	p.P426S	ENST00000368678		426	Ccc/Tcc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058557	69058557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			877	322	757	0	ENST00000288368.4:c.4201T>C	p.Phe1401Leu	p.F1401L	ENST00000288368	NM_024870.2	1401	Ttt/Ctt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	95	311	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ATRX	546	MSKCC	GRCh37	X	76909625	76909625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	121	206	0	ENST00000373344.5:c.4280G>A	p.Arg1427His	p.R1427H	ENST00000373344	NM_000489.3	1427	cGt/cAt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	56	208	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																														
ATM	472	MSKCC	GRCh37	11	108203488	108203488	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0029544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	44	165	0	ENST00000278616.4:c.7789-1G>A		p.X2597_splice	ENST00000278616	NM_000051.3	2597																																																																															
MAPK1	5594	MSKCC	GRCh37	22	22162007	22162007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	121	381	0	ENST00000215832.6:c.248T>C	p.Ile83Thr	p.I83T	ENST00000215832	NM_002745.4	83	aTc/aCc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710858	117710858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	81	369	0	ENST00000368508.3:c.1414G>A	p.Asp472Asn	p.D472N	ENST00000368508	NM_002944.2	472	Gac/Aac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673421	30673422	+	missense_variant	Missense_Mutation	DNP	GA	GA	TG			P-0029544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	75	489	0	ENST00000376406.3:c.3538_3539delinsCA	p.Ser1180His	p.S1180H	ENST00000376406	NM_014641.2	1180	TCt/CAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	260	335	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	1490	543	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	211	286	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980811	40980811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	288	576	0	ENST00000373198.4:c.1675G>A	p.Gly559Arg	p.G559R	ENST00000373198	NM_133170.3	559	Ggg/Agg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608264	28608264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	293	513	0	ENST00000241453.7:c.1792G>A	p.Glu598Lys	p.E598K	ENST00000241453	NM_004119.2	598	Gaa/Aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	49039185	49039185	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	211	404	0	ENST00000267163.4:c.2263T>A	p.Phe755Ile	p.F755I	ENST00000267163	NM_000321.2	755	Ttc/Atc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578284	212578284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	207	556	0	ENST00000342788.4:c.973C>T	p.Pro325Ser	p.P325S	ENST00000342788	NM_005235.2	325	Cct/Tct																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120506379	120506379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1634	356	487	0	ENST00000256646.2:c.1733C>T	p.Pro578Leu	p.P578L	ENST00000256646	NM_024408.3	578	cCt/cTt																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202346	138202346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	326	481	0	ENST00000237289.4:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000237289	NM_001270507.1	755	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392013	118392013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	240	397	0	ENST00000534358.1:c.11524C>T	p.His3842Tyr	p.H3842Y	ENST00000534358	NM_005933.3	3842	Cat/Tat																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66782840	66782840	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	254	473	0	ENST00000307102.5:c.1069G>C	p.Val357Leu	p.V357L	ENST00000307102	NM_002755.3	357	Gtt/Ctt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645915	67645916	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	289	493	2	ENST00000264010.4:c.843_844delinsAA	p.Asp282Asn	p.D282N	ENST00000264010	NM_006565.3	281	ttGGat/ttAAat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164451	47164451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	180	274	0	ENST00000409792.3:c.1675C>T	p.Leu559Phe	p.L559F	ENST00000409792	NM_014159.6	559	Ctt/Ttt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245518	153245518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	183	346	0	ENST00000281708.4:c.1673C>T	p.Ser558Phe	p.S558F	ENST00000281708	NM_033632.3	558	tCt/tTt																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997786	149997786	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	292	453	0	ENST00000253339.5:c.2681T>C	p.Leu894Ser	p.L894S	ENST00000253339		894	tTa/tCa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141545667	141545667	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0029950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	397	568	1	ENST00000220592.5:c.2171T>C	p.Val724Ala	p.V724A	ENST00000220592	NM_012154.3	724	gTt/gCt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	114	469	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	34	451	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	251	474	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	251	474	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426738	212426738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			668	53	533	1	ENST00000342788.4:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000342788	NM_005235.2	793	Cag/Tag																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	341	522	1	ENST00000356142.4:c.85C>A	p.Pro29Thr	p.P29T	ENST00000356142	NM_018890.3	29	Cct/Act																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992729	68992729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	155	636	2	ENST00000288368.4:c.1694C>T	p.Ser565Leu	p.S565L	ENST00000288368	NM_024870.2	565	tCg/tTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55972864	55972864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	75	407	0	ENST00000263923.4:c.1526G>A	p.Gly509Glu	p.G509E	ENST00000263923	NM_002253.2	509	gGa/gAa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396785	396785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			647	112	617	0	ENST00000262320.3:c.241C>T	p.Pro81Ser	p.P81S	ENST00000262320	NM_003502.3	81	Cca/Tca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845938	72845938	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	72	380	0	ENST00000268489.5:c.3530-1G>A		p.X1177_splice	ENST00000268489	NM_006885.3	1177																																																																															
NF1	4763	MSKCC	GRCh37	17	29562669	29562669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			561	70	501	0	ENST00000358273.4:c.3749G>A	p.Arg1250Gln	p.R1250Q	ENST00000358273	NM_001042492.2	1250	cGg/cAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028052	48028052	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	105	352	0	ENST00000234420.5:c.2930A>G	p.Tyr977Cys	p.Y977C	ENST00000234420	NM_000179.2	977	tAc/tGc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502450	186502450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	37	333	0	ENST00000323963.5:c.173C>A	p.Ala58Asp	p.A58D	ENST00000323963		58	gCt/gAt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1795668	1795668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			111	19	84	0	ENST00000260795.2:c.7G>A	p.Ala3Thr	p.A3T	ENST00000260795		3	Gcc/Acc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30668348	30668348	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			749	72	650	0	ENST00000376406.3:c.6164T>C	p.Val2055Ala	p.V2055A	ENST00000376406	NM_014641.2	2055	gTt/gCt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528056	157528056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			701	50	486	0	ENST00000346085.5:c.5781C>G	p.Asp1927Glu	p.D1927E	ENST00000346085	NM_020732.3	1927	gaC/gaG																																																																														
LYN	4067	MSKCC	GRCh37	8	56912079	56912079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			841	54	606	0	ENST00000519728.1:c.1307T>C	p.Ile436Thr	p.I436T	ENST00000519728	NM_002350.3	436	aTt/aCt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	122	578	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443731	52443809	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAATCTTCCACGAGCAGGGTGAAGAGGCCTGGGTGGGGCGACAAGAGGAGGGGGTGATGGTCAGGCAGGCGCGTCCCG	GAAATCTTCCACGAGCAGGGTGAAGAGGCCTGGGTGGGGCGACAAGAGGAGGGGGTGATGGTCAGGCAGGCGCGTCCCG	-			P-0031711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	89	572	0	ENST00000460680.1:c.37+49_66del		p.X13_splice	ENST00000460680	NM_004656.3	13																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	90	168	0				ENST00000310581	NM_198253.2																																																																																
ETV1	2115	MSKCC	GRCh37	7	13935508	13935508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	109	275	0	ENST00000405192.2:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000405192	NM_001163147.1	450	Gaa/Aaa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	234	615	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	159	355	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	159	355	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
TET2	54790	MSKCC	GRCh37	4	106193857	106193857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	106	258	1	ENST00000380013.4:c.4319G>A	p.Arg1440Gln	p.R1440Q	ENST00000380013	NM_001127208.2	1440	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140481412	140481412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	151	389	0	ENST00000288602.6:c.1396G>A	p.Gly466Arg	p.G466R	ENST00000288602	NM_004333.4	466	Gga/Aga																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156735	20156735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	160	389	0	ENST00000379607.5:c.22G>A	p.Gly8Arg	p.G8R	ENST00000379607	NM_001412.3	8	Gga/Aga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	159	355	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005901	69005901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	165	446	0	ENST00000288368.4:c.2312C>T	p.Ser771Phe	p.S771F	ENST00000288368	NM_024870.2	771	tCt/tTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992708	68992708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	143	483	0	ENST00000288368.4:c.1673C>T	p.Pro558Leu	p.P558L	ENST00000288368	NM_024870.2	558	cCc/cTc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17387372	17387372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	236	782	0	ENST00000359435.4:c.638C>T	p.Thr213Ile	p.T213I	ENST00000359435	NM_001033549.1	213	aCc/aTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971304	15971304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	166	461	0	ENST00000268712.3:c.4645C>T	p.Pro1549Ser	p.P1549S	ENST00000268712	NM_006311.3	1549	Ccc/Tcc																																																																														
PGR	5241	MSKCC	GRCh37	11	100962562	100962562	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	170	443	0	ENST00000325455.5:c.1835A>C	p.Asp612Ala	p.D612A	ENST00000325455	NM_001202474.3	612	gAt/gCt																																																																														
CDK4	1019	MSKCC	GRCh37	12	58143035	58143035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	223	480	0	ENST00000257904.6:c.749C>T	p.Pro250Leu	p.P250L	ENST00000257904	NM_000075.3	250	cCc/cTc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67670721	67670721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	137	406	0	ENST00000264010.4:c.1966C>T	p.Pro656Ser	p.P656S	ENST00000264010	NM_006565.3	656	Cct/Tct																																																																														
CIC	23152	MSKCC	GRCh37	19	42794727	42794727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	173	522	1	ENST00000575354.2:c.1807C>T	p.Pro603Ser	p.P603S	ENST00000575354	NM_015125.3	603	Ccc/Tcc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825353	134825353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	112	355	0	ENST00000398015.3:c.869A>G	p.Asn290Ser	p.N290S	ENST00000398015	NM_004441.4	290	aAc/aGc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502410	186502410	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201474676		P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	154	398	0	ENST00000323963.5:c.133C>T	p.Leu45Phe	p.L45F	ENST00000323963		45	Ctt/Ttt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522425	187522425	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	283	447	0	ENST00000441802.2:c.11638G>A	p.Glu3880Lys	p.E3880K	ENST00000441802	NM_005245.3	3880	Gag/Aag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31468137	31468137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	150	439	0	ENST00000344624.3:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000344624		759	Cgt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992708	68992709	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	143	488	0	ENST00000288368.4:c.1673_1674delinsTT	p.Pro558Leu	p.P558L	ENST00000288368	NM_024870.2	558	cCC/cTT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507374	8507374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	128	311	0	ENST00000356435.5:c.1604C>T	p.Ser535Phe	p.S535F	ENST00000356435		535	tCt/tTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	141	441	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	23	606	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PAK7	0	MSKCC	GRCh37	20	9520257	9520257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	167	425	0	ENST00000353224.5:c.2012C>T	p.Ser671Leu	p.S671L	ENST00000353224	NM_177990.2	671	tCa/tTa																																																																														
SESN2	83667	MSKCC	GRCh37	1	28601376	28601376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	252	618	0	ENST00000253063.3:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000253063	NM_031459.4	354	cGg/cAg																																																																														
RHOA	387	MSKCC	GRCh37	3	49405914	49405914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	251	604	0	ENST00000418115.1:c.224C>T	p.Pro75Leu	p.P75L	ENST00000418115	NM_001664.2	75	cCa/cTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144595	55144595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	155	498	0	ENST00000257290.5:c.2069G>A	p.Arg690Lys	p.R690K	ENST00000257290	NM_006206.4	690	aGg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	126	293	0				ENST00000310581	NM_198253.2																																																																																
SH2B3	10019	MSKCC	GRCh37	12	111885897	111885897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	284	720	0	ENST00000341259.2:c.1519C>T	p.Pro507Ser	p.P507S	ENST00000341259	NM_005475.2	507	Ccc/Tcc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68331730	68331730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	59	211	0	ENST00000487270.1:c.326C>T	p.Pro109Leu	p.P109L	ENST00000487270	NM_133509.3	109	cCa/cTa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533069	63533069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	225	646	1	ENST00000307078.5:c.1825C>T	p.Pro609Ser	p.P609S	ENST00000307078	NM_004655.3	609	Ccc/Tcc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164481	36164481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	150	385	0	ENST00000300305.3:c.1394A>G	p.Asn465Ser	p.N465S	ENST00000300305		465	aAc/aGc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458429	12458429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	287	764	2	ENST00000287820.6:c.1046G>A	p.Gly349Glu	p.G349E	ENST00000287820	NM_015869.4	349	gGa/gAa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934273	49934273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	233	621	0	ENST00000296474.3:c.2234C>T	p.Ala745Val	p.A745V	ENST00000296474	NM_002447.2	745	gCc/gTc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79966069	79966069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	185	586	0	ENST00000265081.6:c.733G>A	p.Asp245Asn	p.D245N	ENST00000265081	NM_002439.4	245	Gat/Aat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0036844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	307	283	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0036844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	277	385	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
ATR	545	MSKCC	GRCh37	3	142204007	142204007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	350	339	0	ENST00000350721.4:c.6196C>T	p.Arg2066Trp	p.R2066W	ENST00000350721	NM_001184.3	2066	Cgg/Tgg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588611	28588611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	77	372	0	ENST00000241453.7:c.2837A>G	p.Gln946Arg	p.Q946R	ENST00000241453	NM_004119.2	946	cAg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	32	427	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	45	411	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59770824	59770824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45572934		P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	36	276	0	ENST00000259008.2:c.2542C>T	p.Arg848Cys	p.R848C	ENST00000259008	NM_032043.2	848	Cgc/Tgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417634	139417634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	49	499	1	ENST00000277541.6:c.410C>T	p.Ser137Leu	p.S137L	ENST00000277541	NM_017617.3	137	tCg/tTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88428945	88428945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	15	173	0	ENST00000360948.2:c.2155G>A	p.Asp719Asn	p.D719N	ENST00000360948	NM_001012338.2	719	Gat/Aat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933350	39933350	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	48	271	0	ENST00000378444.4:c.1249G>C	p.Asp417His	p.D417H	ENST00000378444	NM_001123385.1	417	Gac/Cac																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31388640	31388640	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	30	338	0	ENST00000328111.2:c.1906-1G>T		p.X636_splice	ENST00000328111	NM_006892.3	636																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045670	26045670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	14	143	0	ENST00000540144.1:c.32C>T	p.Ser11Phe	p.S11F	ENST00000540144	NM_003531.2	11	tCt/tTt																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	54	454	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561211	9561211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	35	309	1	ENST00000353224.5:c.571G>A	p.Asp191Asn	p.D191N	ENST00000353224	NM_177990.2	191	Gat/Aat																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478106	99478106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	32	279	0	ENST00000268035.6:c.3010G>A	p.Glu1004Lys	p.E1004K	ENST00000268035	NM_000875.3	1004	Gaa/Aaa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798597	45798597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	43	448	0	ENST00000372115.3:c.455C>T	p.Ser152Phe	p.S152F	ENST00000372115	NM_001048171.1	152	tCc/tTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11186825	11186825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	31	262	0	ENST00000361445.4:c.6380C>T	p.Ser2127Phe	p.S2127F	ENST00000361445	NM_004958.3	2127	tCc/tTc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980376	201980376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	58	534	1	ENST00000359651.3:c.112G>A	p.Asp38Asn	p.D38N	ENST00000359651		38	Gat/Aat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287474	46287474	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	28	311	0	ENST00000334344.6:c.5333A>C	p.Asn1778Thr	p.N1778T	ENST00000334344	NM_152641.2	1778	aAt/aCt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612228	1612251	+	inframe_deletion	In_Frame_Del	DEL	CAGGATGACCTGCACGGCCTGCTG	CAGGATGACCTGCACGGCCTGCTG	-			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	30	358	0	ENST00000344749.5:c.1768_1791del	p.Gln590_Leu597del	p.Q590_L597del	ENST00000344749	NM_001136139.2	590	CAGCAGGCCGTGCAGGTCATCCTG/-																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123705	11123705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	41	442	0	ENST00000344626.4:c.2355G>T	p.Lys785Asn	p.K785N	ENST00000344626	NM_003072.3	785	aaG/aaT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220898	36220898	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	16	172	0	ENST00000222270.7:c.4948A>C	p.Thr1650Pro	p.T1650P	ENST00000222270	NM_014727.1	1650	Acg/Ccg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966463	25966463	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201545861		P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	50	494	0	ENST00000435504.4:c.2743C>T	p.Pro915Ser	p.P915S	ENST00000435504		915	Cca/Tca																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99179955	99179955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	49	451	0	ENST00000074304.5:c.1898T>C	p.Leu633Pro	p.L633P	ENST00000074304	NM_001134224.1	633	cTg/cCg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661386	227661386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	36	351	0	ENST00000305123.5:c.2069C>T	p.Pro690Leu	p.P690L	ENST00000305123	NM_005544.2	690	cCt/cTt																																																																														
TP63	8626	MSKCC	GRCh37	3	189526169	189526169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	93	385	0	ENST00000264731.3:c.433G>A	p.Ala145Thr	p.A145T	ENST00000264731	NM_003722.4	145	Gcg/Acg																																																																														
TET2	54790	MSKCC	GRCh37	4	106196976	106196976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	27	189	0	ENST00000380013.4:c.5309C>T	p.Pro1770Leu	p.P1770L	ENST00000380013	NM_001127208.2	1770	cCg/cTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249511	153249512	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AC			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	29	374	0	ENST00000281708.4:c.1266_1267delinsGT	p.Gly423Ter	p.G423*	ENST00000281708	NM_033632.3	422	ggTGga/ggGTga																																																																														
APC	324	MSKCC	GRCh37	5	112090591	112090591	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	20	161	0	ENST00000257430.4:c.4G>C	p.Ala2Pro	p.A2P	ENST00000257430	NM_000038.5	2	Gct/Cct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706847	117706847	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	22	190	1	ENST00000368508.3:c.2303T>C	p.Val768Ala	p.V768A	ENST00000368508	NM_002944.2	768	gTg/gCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	23	203	0	ENST00000304494.5:c.164G>A	p.Gly55Asp	p.G55D	ENST00000304494	NM_000077.4	55	gGc/gAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	23	203	0	ENST00000304494.5:c.164G>A	p.Gly55Asp	p.G55D	ENST00000304494	NM_000077.4	55	gGc/gAc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152861508	152861508	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	54	140	0	ENST00000406277.2:c.244G>T	p.Glu82Ter	p.E82*	ENST00000406277	NM_152274.4	82	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579359	7579360	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0037685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	30	425	0	ENST00000269305.4:c.327_328delinsAT	p.Phe109_Arg110delinsLeuCys	p.F109_R110delinsLC	ENST00000269305	NM_001126112.2	109	ttCCgt/ttATgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	98	381	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0039410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	16	326	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0039410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	71	332	0	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0039410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	71	332	0	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222727	5222727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	46	486	1	ENST00000357368.4:c.3076C>T	p.Arg1026Cys	p.R1026C	ENST00000357368	NM_002850.3	1026	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140477813	140477813	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs180177037		P-0039410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	43	406	0	ENST00000288602.6:c.1495A>G	p.Lys499Glu	p.K499E	ENST00000288602	NM_004333.4	499	Aaa/Gaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0039410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	71	332	0	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956771	68956771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	170	642	1	ENST00000288368.4:c.889C>T	p.Arg297Cys	p.R297C	ENST00000288368	NM_024870.2	297	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	31	275	0				ENST00000310581	NM_198253.2																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149504382	149504382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	29	514	0	ENST00000261799.4:c.1820G>A	p.Gly607Asp	p.G607D	ENST00000261799	NM_002609.3	607	gGc/gAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677912	117677912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	25	364	0	ENST00000368508.3:c.4021G>A	p.Ala1341Thr	p.A1341T	ENST00000368508	NM_002944.2	1341	Gct/Act																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44870265	44870265	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0039410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	28	347	0	ENST00000377967.4:c.443+1G>C		p.X148_splice	ENST00000377967	NM_021140.2	148																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			821	110	605	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			422	73	270	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610337	10610337	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			632	196	875	0	ENST00000171111.5:c.373A>T	p.Ile125Phe	p.I125F	ENST00000171111	NM_203500.1	125	Att/Ttt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907161	101907161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			213	38	242	0	ENST00000374994.4:c.1121G>C	p.Gly374Ala	p.G374A	ENST00000374994	NM_004612.2	374	gGa/gCa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123895	46123896	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			288	29	176	0	ENST00000334344.6:c.161_162del	p.Val54AspfsTer11	p.V54Dfs*11	ENST00000334344	NM_152641.2	54	gTC/g																																																																														
WT1	7490	MSKCC	GRCh37	11	32438063	32438063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			533	85	465	0	ENST00000332351.3:c.974C>T	p.Ser325Leu	p.S325L	ENST00000332351	NM_024426.4	325	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577604	7577616	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAACCTAGGAGA	CCAACCTAGGAGA	-			P-0042033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			354	123	432	0	ENST00000269305.4:c.673-8_677del		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	54	213	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	99	277	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	214	520	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099124	27099124	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0044344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	259	328	0	ENST00000324856.7:c.3539+1G>T		p.X1180_splice	ENST00000324856	NM_006015.4	1180																																																																															
TET2	54790	MSKCC	GRCh37	4	106196695	106196695	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	117	353	0	ENST00000380013.4:c.5028T>A	p.His1676Gln	p.H1676Q	ENST00000380013	NM_001127208.2	1676	caT/caA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	160	263	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	225	288	0				ENST00000310581	NM_198253.2																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139409078	139409078	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			998	192	739	0	ENST00000277541.6:c.2091C>G	p.Ile697Met	p.I697M	ENST00000277541	NM_017617.3	697	atC/atG																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641161	23641161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	164	493	0	ENST00000261584.4:c.2314G>A	p.Asp772Asn	p.D772N	ENST00000261584	NM_024675.3	772	Gat/Aat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041720	47041720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	114	415	0	ENST00000329236.7:c.1711C>T	p.Gln571Ter	p.Q571*	ENST00000329236	NM_001204466.1	571	Caa/Taa																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054983	176054983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			675	56	377	0	ENST00000367669.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000367669	NM_022457.5	357	cGa/cAa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46270961	46270961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	106	358	0	ENST00000371998.3:c.3085C>G	p.Leu1029Val	p.L1029V	ENST00000371998		1029	Ctt/Gtt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			702	156	394	0	ENST00000337432.4:c.61C>G	p.Pro21Ala	p.P21A	ENST00000337432	NM_058216.2	21	Cca/Gca																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950005	44950005	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			540	119	340	0	ENST00000377967.4:c.3774G>A	p.Trp1258Ter	p.W1258*	ENST00000377967	NM_021140.2	1258	tgG/tgA																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216714	7216714	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	122	382	0	ENST00000380728.2:c.709C>T	p.Gln237Ter	p.Q237*	ENST00000380728		237	Cag/Tag																																																																														
TP63	8626	MSKCC	GRCh37	3	189607164	189607164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			778	222	567	1	ENST00000264731.3:c.1543G>A	p.Asp515Asn	p.D515N	ENST00000264731	NM_003722.4	515	Gac/Aac																																																																														
ID3	3399	MSKCC	GRCh37	1	23885835	23885835	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34462407		P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	135	407	0	ENST00000374561.5:c.83G>A	p.Arg28Gln	p.R28Q	ENST00000374561	NM_002167.4	28	cGa/cAa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2202742	2202742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			616	169	464	0	ENST00000398665.3:c.751C>T	p.His251Tyr	p.H251Y	ENST00000398665	NM_032482.2	251	Cac/Tac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28644733	28644733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	78	283	0	ENST00000241453.7:c.60G>A	p.Met20Ile	p.M20I	ENST00000241453	NM_004119.2	20	atG/atA																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462171	120462171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	135	415	0	ENST00000256646.2:c.5545G>A	p.Glu1849Lys	p.E1849K	ENST00000256646	NM_024408.3	1849	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879331	151879331	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	103	373	1	ENST00000262189.6:c.5614C>T	p.Gln1872Ter	p.Q1872*	ENST00000262189	NM_170606.2	1872	Cag/Tag																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45657031	45657031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	146	341	0	ENST00000407780.3:c.125G>A	p.Gly42Glu	p.G42E	ENST00000407780	NM_001283052.1	42	gGa/gAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140494200	140494200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	111	621	0	ENST00000288602.6:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000288602	NM_004333.4	350	Gat/Aat																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740204	162740204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			586	143	357	0	ENST00000367921.3:c.1406C>T	p.Ser469Leu	p.S469L	ENST00000367921	NM_006182.2	469	tCg/tTg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517766	176517766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			840	121	549	0	ENST00000292408.4:c.376G>A	p.Asp126Asn	p.D126N	ENST00000292408	NM_213647.1	126	Gat/Aat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100219	157100219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			44	13	35	0	ENST00000346085.5:c.1156G>A	p.Gly386Arg	p.G386R	ENST00000346085	NM_020732.3	386	Ggg/Agg																																																																														
CCND2	894	MSKCC	GRCh37	12	4383225	4383225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	124	320	0	ENST00000261254.3:c.19G>A	p.Glu7Lys	p.E7K	ENST00000261254	NM_001759.3	7	Gag/Aag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	475121	475121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	110	368	0	ENST00000399788.2:c.516C>A	p.Phe172Leu	p.F172L	ENST00000399788	NM_001042603.1	172	ttC/ttA																																																																														
TSC2	7249	MSKCC	GRCh37	16	2106248	2106248	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	162	512	0	ENST00000219476.3:c.648+3C>T		p.X216_splice	ENST00000219476	NM_000548.3	216																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922734	44922734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	101	320	0	ENST00000377967.4:c.1595C>T	p.Ser532Leu	p.S532L	ENST00000377967	NM_021140.2	532	tCa/tTa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115801	8115801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	160	474	0	ENST00000346208.3:c.1147G>A	p.Glu383Lys	p.E383K	ENST00000346208		383	Gag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637723	176637723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			858	91	472	0	ENST00000439151.2:c.2323C>A	p.Gln775Lys	p.Q775K	ENST00000439151	NM_022455.4	775	Caa/Aaa																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881413	111881413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	280	343	0	ENST00000393256.3:c.91G>T	p.Gly31Trp	p.G31W	ENST00000393256	NM_006538.4	31	Ggg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76938646	76938646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	112	396	0	ENST00000373344.5:c.2102G>A	p.Arg701His	p.R701H	ENST00000373344	NM_000489.3	701	cGt/cAt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112131	115112131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	201	531	0	ENST00000257566.3:c.1609G>A	p.Ala537Thr	p.A537T	ENST00000257566	NM_016569.3	537	Gct/Act																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931652	39931652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			759	171	513	0	ENST00000378444.4:c.2947G>A	p.Glu983Lys	p.E983K	ENST00000378444	NM_001123385.1	983	Gaa/Aaa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032111	26032111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	104	320	1	ENST00000244661.2:c.178G>A	p.Glu60Lys	p.E60K	ENST00000244661	NM_003537.3	60	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254713	16254713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	136	467	2	ENST00000375759.3:c.1978G>A	p.Glu660Lys	p.E660K	ENST00000375759	NM_015001.2	660	Gaa/Aaa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935406	36935406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			764	227	656	0	ENST00000361632.4:c.1321G>A	p.Asp441Asn	p.D441N	ENST00000361632		441	Gac/Aac																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843677	156843677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			975	235	732	1	ENST00000524377.1:c.1103G>T	p.Gly368Val	p.G368V	ENST00000524377	NM_002529.3	368	gGc/gTc																																																																														
WT1	7490	MSKCC	GRCh37	11	32439180	32439180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	87	370	0	ENST00000332351.3:c.893C>A	p.Thr298Lys	p.T298K	ENST00000332351	NM_024426.4	298	aCa/aAa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94212886	94212886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	66	296	0	ENST00000323929.3:c.356C>T	p.Ser119Leu	p.S119L	ENST00000323929	NM_005591.3	119	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432609	49432609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			713	206	664	0	ENST00000301067.7:c.8530G>C	p.Glu2844Gln	p.E2844Q	ENST00000301067	NM_003482.3	2844	Gaa/Caa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554373	81554373	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	88	233	0	ENST00000298171.2:c.392+1G>A		p.X131_splice	ENST00000298171	NM_000369.2	131																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14028060	14028060	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	76	196	0	ENST00000311895.7:c.1114G>T	p.Glu372Ter	p.E372*	ENST00000311895	NM_005236.2	372	Gaa/Taa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37646895	37646895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	169	491	0	ENST00000447079.4:c.2017C>T	p.Pro673Ser	p.P673S	ENST00000447079	NM_015083.1	673	Cca/Tca																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244513	41244513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	131	449	0	ENST00000357654.3:c.3035G>T	p.Arg1012Ile	p.R1012I	ENST00000357654	NM_007294.3	1012	aGa/aTa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435240	56435240	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			761	198	609	0	ENST00000407977.2:c.1897T>A	p.Cys633Ser	p.C633S	ENST00000407977		633	Tgc/Agc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761169	59761169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			685	144	437	0	ENST00000259008.2:c.3238G>C	p.Asp1080His	p.D1080H	ENST00000259008	NM_032043.2	1080	Gat/Cat																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73775007	73775007	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	84	287	0	ENST00000254810.4:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000254810	NM_005324.3	56	Cag/Tag																																																																														
PMAIP1	5366	MSKCC	GRCh37	18	57569878	57569878	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	65	197	0	ENST00000316660.6:c.59-1G>C		p.X20_splice	ENST00000316660	NM_021127.2	20																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5244406	5244406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			861	191	657	0	ENST00000357368.4:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000357368	NM_002850.3	359	cCt/cTt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10259674	10259674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	70	310	0	ENST00000340748.4:c.2558C>T	p.Ser853Phe	p.S853F	ENST00000340748		853	tCc/tTc																																																																														
CALR	811	MSKCC	GRCh37	19	13049971	13049971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	67	422	0	ENST00000316448.5:c.115G>A	p.Glu39Lys	p.E39K	ENST00000316448	NM_004343.3	39	Gaa/Aaa																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627326	14627326	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			831	351	643	0	ENST00000254322.2:c.744G>C	p.Lys248Asn	p.K248N	ENST00000254322	NM_006145.1	248	aaG/aaC																																																																														
RRAS	6237	MSKCC	GRCh37	19	50138873	50138873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	262	819	0	ENST00000246792.3:c.617C>A	p.Pro206His	p.P206H	ENST00000246792	NM_006270.3	206	cCc/cAc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222396	39222396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			757	188	528	0	ENST00000402219.2:c.3214G>C	p.Glu1072Gln	p.E1072Q	ENST00000402219	NM_005633.3	1072	Gaa/Caa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249822	39249822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	119	313	0	ENST00000402219.2:c.1747G>A	p.Glu583Lys	p.E583K	ENST00000402219	NM_005633.3	583	Gaa/Aaa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46597021	46597021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	170	367	1	ENST00000263734.3:c.835G>A	p.Glu279Lys	p.E279K	ENST00000263734	NM_001430.4	279	Gaa/Aaa																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22123503	22123503	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	197	340	0	ENST00000215832.6:c.1073A>T	p.Tyr358Phe	p.Y358F	ENST00000215832	NM_002745.4	358	tAc/tTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41537076	41537076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	85	222	0	ENST00000263253.7:c.1903G>T	p.Glu635Ter	p.E635*	ENST00000263253	NM_001429.3	635	Gag/Tag																																																																														
EP300	2033	MSKCC	GRCh37	22	41543888	41543888	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	173	469	0	ENST00000263253.7:c.2182del	p.Arg728GlyfsTer48	p.R728Gfs*48	ENST00000263253	NM_001429.3	727	Ccc/cc																																																																														
VHL	7428	MSKCC	GRCh37	3	10188218	10188218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			548	134	443	0	ENST00000256474.2:c.361G>C	p.Asp121His	p.D121H	ENST00000256474	NM_000551.3	121	Gat/Cat																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437813	52437813	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			651	160	530	0	ENST00000460680.1:c.1348G>C	p.Glu450Gln	p.E450Q	ENST00000460680	NM_004656.3	450	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178943749	178943749	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	57	159	0	ENST00000263967.3:c.2417-1G>A		p.X806_splice	ENST00000263967	NM_006218.2	806																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178943761	178943761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	59	176	0	ENST00000263967.3:c.2428G>C	p.Asp810His	p.D810H	ENST00000263967	NM_006218.2	810	Gat/Cat																																																																														
KDR	3791	MSKCC	GRCh37	4	55962419	55962419	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			518	93	343	0	ENST00000263923.4:c.2705T>C	p.Leu902Pro	p.L902P	ENST00000263923	NM_002253.2	902	cTa/cCa																																																																														
KDR	3791	MSKCC	GRCh37	4	55987277	55987277	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	96	231	0	ENST00000263923.4:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000263923	NM_002253.2	50	Caa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249498	153249498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	129	398	0	ENST00000281708.4:c.1280C>T	p.Ser427Leu	p.S427L	ENST00000281708	NM_033632.3	427	tCa/tTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521484	187521484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	92	304	0	ENST00000441802.2:c.11671G>C	p.Asp3891His	p.D3891H	ENST00000441802	NM_005245.3	3891	Gac/Cac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592042	67592042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	89	185	0	ENST00000274335.5:c.1858G>A	p.Asp620Asn	p.D620N	ENST00000274335		620	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112174337	112174337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	20	186	0	ENST00000257430.4:c.3046G>A	p.Asp1016Asn	p.D1016N	ENST00000257430	NM_000038.5	1016	Gat/Aat																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858334	27858334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	223	413	0	ENST00000359303.2:c.237C>G	p.Phe79Leu	p.F79L	ENST00000359303	NM_003535.2	79	ttC/ttG																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675932	30675932	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			873	231	579	0	ENST00000376406.3:c.2424G>C	p.Gln808His	p.Q808H	ENST00000376406	NM_014641.2	808	caG/caC																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188794	32188794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			888	208	571	0	ENST00000375023.3:c.760G>A	p.Glu254Lys	p.E254K	ENST00000375023	NM_004557.3	254	Gag/Aag																																																																														
TAP1	6890	MSKCC	GRCh37	6	32820183	32820183	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			769	168	446	0	ENST00000354258.4:c.875C>G	p.Ser292Cys	p.S292C	ENST00000354258	NM_000593.5	292	tCc/tGc																																																																														
FYN	2534	MSKCC	GRCh37	6	112041209	112041209	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	224	377	1	ENST00000368678.4:c.46G>T	p.Glu16Ter	p.E16*	ENST00000368678		16	Gag/Tag																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997712	149997712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	88	263	0	ENST00000253339.5:c.2755C>T	p.Pro919Ser	p.P919S	ENST00000253339		919	Cct/Tct																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004316	150004316	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	101	212	0	ENST00000253339.5:c.1909C>T	p.Gln637Ter	p.Q637*	ENST00000253339		637	Caa/Taa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419880	152419880	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	123	334	0	ENST00000206249.3:c.1567G>C	p.Glu523Gln	p.E523Q	ENST00000206249	NM_000125.3	523	Gag/Cag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2951918	2951918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	135	453	0	ENST00000396946.4:c.3032G>C	p.Arg1011Thr	p.R1011T	ENST00000396946	NM_032415.4	1011	aGa/aCa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946060	13946060	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	100	244	0	ENST00000405192.2:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000405192	NM_001163147.1	346	Gaa/Taa																																																																														
BRAF	673	MSKCC	GRCh37	7	140439630	140439630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	118	386	0	ENST00000288602.6:c.2109G>C	p.Glu703Asp	p.E703D	ENST00000288602	NM_004333.4	703	gaG/gaC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860539	151860539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			840	71	436	0	ENST00000262189.6:c.10123C>A	p.Pro3375Thr	p.P3375T	ENST00000262189	NM_170606.2	3375	Cca/Aca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860608	151860608	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			789	55	447	0	ENST00000262189.6:c.10054C>T	p.Gln3352Ter	p.Q3352*	ENST00000262189	NM_170606.2	3352	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879084	151879084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			703	169	381	0	ENST00000262189.6:c.5861C>T	p.Ser1954Phe	p.S1954F	ENST00000262189	NM_170606.2	1954	tCt/tTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945321	151945321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	31	98	0	ENST00000262189.6:c.2198C>A	p.Ser733Tyr	p.S733Y	ENST00000262189	NM_170606.2	733	tCt/tAt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129936	69129936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	77	259	0	ENST00000288368.4:c.4690G>A	p.Asp1564Asn	p.D1564N	ENST00000288368	NM_024870.2	1564	Gat/Aat																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891193	101891193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			204	327	246	0	ENST00000374994.4:c.154G>T	p.Gly52Trp	p.G52W	ENST00000374994	NM_004612.2	52	Ggg/Tgg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135776220	135776220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	112	264	0	ENST00000298552.3:c.2507C>T	p.Ser836Leu	p.S836L	ENST00000298552	NM_001162426.1	836	tCa/tTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139403521	139403521	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			750	158	539	0	ENST00000277541.6:c.2972C>G	p.Ser991Cys	p.S991C	ENST00000277541	NM_017617.3	991	tCc/tGc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922157	39922157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			700	168	540	0	ENST00000378444.4:c.4015G>A	p.Glu1339Lys	p.E1339K	ENST00000378444	NM_001123385.1	1339	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76763958	76763958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	289	507	0	ENST00000373344.5:c.7350C>A	p.Asn2450Lys	p.N2450K	ENST00000373344	NM_000489.3	2450	aaC/aaA																																																																														
ATRX	546	MSKCC	GRCh37	X	76813035	76813035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	118	342	0	ENST00000373344.5:c.6586G>C	p.Glu2196Gln	p.E2196Q	ENST00000373344	NM_000489.3	2196	Gag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	76	531	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
ATM	472	MSKCC	GRCh37	11	108180982	108180982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			102	70	236	0	ENST00000278616.4:c.5858C>T	p.Thr1953Ile	p.T1953I	ENST00000278616	NM_000051.3	1953	aCa/aTa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266714	198266714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	91	501	0	ENST00000335508.6:c.2218G>C	p.Gly740Arg	p.G740R	ENST00000335508	NM_012433.2	740	Gga/Cga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982355	201982355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			923	342	518	0	ENST00000359651.3:c.734G>T	p.Arg245Leu	p.R245L	ENST00000359651		245	cGg/cTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456505	99456505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	40	261	0	ENST00000268035.6:c.1822G>A	p.Ala608Thr	p.A608T	ENST00000268035	NM_000875.3	608	Gct/Act																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641183	3641183	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			861	157	509	0	ENST00000294008.3:c.2456T>C	p.Leu819Ser	p.L819S	ENST00000294008	NM_032444.2	819	tTg/tCg																																																																														
HGF	3082	MSKCC	GRCh37	7	81381551	81381551	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	62	327	0	ENST00000222390.5:c.510A>T	p.Lys170Asn	p.K170N	ENST00000222390	NM_000601.4	170	aaA/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			115	388	512	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114682	73114682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			366	358	321	0	ENST00000356692.5:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000356692		355	Gag/Aag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972633	25972633	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			320	129	316	0	ENST00000435504.4:c.1792C>G	p.Gln598Glu	p.Q598E	ENST00000435504		598	Cag/Gag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984428	201984428	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			542	689	503	0	ENST00000359651.3:c.1093G>T	p.Glu365Ter	p.E365*	ENST00000359651		365	Gag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513224	106513224	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			264	91	260	0	ENST00000359195.3:c.2128C>T	p.Gln710Ter	p.Q710*	ENST00000359195	NM_002649.2	710	Cag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32968832	32968832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			132	60	161	0	ENST00000380152.3:c.9266del	p.Pro3089LeufsTer15	p.P3089Lfs*15	ENST00000380152		3088	gCc/gc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027697	48027697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			204	82	187	0	ENST00000234420.5:c.2575C>T	p.Leu859Phe	p.L859F	ENST00000234420	NM_000179.2	859	Ctt/Ttt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45799185	45799185	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			549	221	516	0	ENST00000372115.3:c.206C>G	p.Ser69Ter	p.S69*	ENST00000372115	NM_001048171.1	69	tCa/tGa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46233186	46233186	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			63	307	248	0	ENST00000334344.6:c.1405G>T	p.Glu469Ter	p.E469*	ENST00000334344	NM_152641.2	469	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427871	49427871	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			464	250	503	0	ENST00000301067.7:c.10719G>C	p.Lys3573Asn	p.K3573N	ENST00000301067	NM_003482.3	3573	aaG/aaC																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514958	103514958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			166	92	226	0	ENST00000355739.4:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000355739	NM_000123.3	487	Ccg/Tcg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249766	39249766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			409	148	322	0	ENST00000402219.2:c.1803C>G	p.Ile601Met	p.I601M	ENST00000402219	NM_005633.3	601	atC/atG																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319885	62319885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044938-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1706	573	696	1	ENST00000508582.2:c.1799G>T	p.Arg600Leu	p.R600L	ENST00000508582		600	cGc/cTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	185	566	2	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	25	341	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0045220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	84	265	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498423	89498423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	46	353	1	ENST00000336596.2:c.2395C>T	p.Arg799Cys	p.R799C	ENST00000336596	NM_005233.5	799	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			189	190	350	1	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349365	73349365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	49	379	0	ENST00000377767.4:c.971A>G	p.Glu324Gly	p.E324G	ENST00000377767	NM_014953.3	324	gAa/gGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578402	7578404	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0045220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	391	891	0	ENST00000269305.4:c.526_528del	p.Cys176del	p.C176del	ENST00000269305	NM_001126112.2	176	TGC/-																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845229	151845229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	240	556	1	ENST00000262189.6:c.13783C>T	p.Arg4595Cys	p.R4595C	ENST00000262189	NM_170606.2	4595	Cgc/Tgc																																																																														
AXL	558	MSKCC	GRCh37	19	41745198	41745198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045220-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	162	824	0	ENST00000301178.4:c.1264C>T	p.Pro422Ser	p.P422S	ENST00000301178	NM_021913.4	422	Ccc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045479-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	10	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0045479-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	10	473	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045479-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	42	751	0	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522598	157522598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	70	410	0	ENST00000346085.5:c.4870C>T	p.Arg1624Ter	p.R1624*	ENST00000346085	NM_020732.3	1624	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	100	576	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44911036	44911037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	20	91	0	ENST00000377967.4:c.738dup	p.Gln247ThrfsTer16	p.Q247Tfs*16	ENST00000377967	NM_021140.2	246	tta/ttAa																																																																														
SUFU	51684	MSKCC	GRCh37	10	104268936	104268936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	82	478	0	ENST00000369902.3:c.193C>T	p.Pro65Ser	p.P65S	ENST00000369902	NM_016169.3	65	Cca/Tca																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117593	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0045691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	51	736	0	ENST00000245479.2:c.61_62delinsA	p.Ala21ThrfsTer40	p.A21Tfs*40	ENST00000245479	NM_000346.3	21	GCc/Ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	35	277	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	30	304	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243482	41243482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	52	530	0	ENST00000357654.3:c.4066C>G	p.Gln1356Glu	p.Q1356E	ENST00000357654	NM_007294.3	1356	Caa/Gaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106412	27106412	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	63	464	0	ENST00000324856.7:c.6023del	p.Leu2008ArgfsTer7	p.L2008Rfs*7	ENST00000324856	NM_006015.4	2008	cTg/cg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878847	117878847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	71	270	0	ENST00000297338.2:c.122T>C	p.Val41Ala	p.V41A	ENST00000297338	NM_006265.2	41	gTg/gCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	66	327	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	59	262	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	59	262	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	59	262	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
FAM58A	0	MSKCC	GRCh37	X	152858119	152858119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			937	75	737	0	ENST00000406277.2:c.496G>A	p.Val166Ile	p.V166I	ENST00000406277	NM_152274.4	166	Gtc/Atc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986595	36986596	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0045911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	21	341	0	ENST00000354822.5:c.1093_1094del	p.Ala365GlnfsTer73	p.A365Qfs*73	ENST00000354822	NM_001079668.2	365	GCc/c																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408924	41408924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	29	296	0	ENST00000373198.4:c.502G>A	p.Val168Ile	p.V168I	ENST00000373198	NM_133170.3	168	Gtc/Atc																																																																														
NBN	4683	MSKCC	GRCh37	8	90965683	90965683	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	31	249	0	ENST00000265433.3:c.1634T>C	p.Leu545Pro	p.L545P	ENST00000265433	NM_002485.4	545	cTa/cCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	11	515	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	558	531	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37680930	37680930	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	336	293	1	ENST00000447079.4:c.3103delC	p.His1035ThrfsTer22	p.H1035Tfs*22	ENST00000447079	NM_015083.1	1033	ctC/ct																																																																														
STAT3	6774	MSKCC	GRCh37	17	40469200	40469200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	33	196	0	ENST00000264657.5:c.2144C>T	p.Pro715Leu	p.P715L	ENST00000264657	NM_139276.2	715	cCa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	316	530	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436052	110436052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	35	830	0	ENST00000375856.3:c.2349C>G	p.Phe783Leu	p.F783L	ENST00000375856	NM_003749.2	783	ttC/ttG																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255496	16255496	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	85	407	0	ENST00000375759.3:c.2761C>G	p.Gln921Glu	p.Q921E	ENST00000375759	NM_015001.2	921	Cag/Gag																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572671	64572671	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0045947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	233	519	0	ENST00000337652.1:c.1201-1G>C		p.X401_splice	ENST00000337652	NM_130803.2	401																																																																															
CDK8	1024	MSKCC	GRCh37	13	26959435	26959435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	39	395	0	ENST00000381527.3:c.602C>G	p.Ala201Gly	p.A201G	ENST00000381527	NM_001260.1	201	gCc/gGc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30396562	30396562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	58	330	0	ENST00000331968.5:c.157C>G	p.Leu53Val	p.L53V	ENST00000331968	NM_002742.2	53	Ctg/Gtg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39535296	39535296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	11	151	0	ENST00000262039.4:c.40G>C	p.Asp14His	p.D14H	ENST00000262039	NM_002647.2	14	Gac/Cac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610084	10610084	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	95	518	0	ENST00000171111.5:c.626T>A	p.Met209Lys	p.M209K	ENST00000171111	NM_203500.1	209	aTg/aAg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99160401	99160401	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	149	474	0	ENST00000074304.5:c.880A>T	p.Ile294Phe	p.I294F	ENST00000074304	NM_001134224.1	294	Att/Ttt																																																																														
TOP1	7150	MSKCC	GRCh37	20	39751847	39751847	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	158	303	0	ENST00000361337.2:c.2208G>A	p.Trp736Ter	p.W736*	ENST00000361337	NM_003286.2	736	tgG/tgA																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32165142	32166164	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGGTTGGGGTTGGCTCCAGCCTCAAGGAGGCGGCGGGCAGCGGTTGGCCGGGAGAATCGGGCAGCCAGGTGCAGGGGGGTCTCCCCAGTGCCCACGGTGTGAGCCTGGGGACAGGCCCCTCCATCCAGCAGAGGTTCCCAGGGCTCAGGACATCCCAACCATGCCCCTTGGAAGGTCCCGGACTGTACTTCCCCACAGCAAACTGCTGACATCAGGGGTGTCACCCCATCTGTTGGTAAGACAGAGTAATGGGTCAATCTAAAGGACACAACAAGGGGGAAGGGACAACATGTAAGCTCAGAGAGAATCAAAACCTGAGGTGTTGGGAAGCTAAGTTCTGGCTCTGTGTGGCTTTAGCCAAGTGACTTTTCTGCTTTTCTCTGACTTCAGTTTCTTCCTCTGTAAAAGGAACCTGCAGCTTAATTCTCTGACATTCCAGGGCAGTGGTTTTCTCTTTTTTTTTTTTTTTTTTCTGAGACGGAGTCTCGCCCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCTCCTCCCAGGTTCACGCCATTCTCCTGCCTTAGCCTCCAGAGCAGCTGGGACTACAGGCTCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCTAGCAGTGGTTTTCTCAAACGAGTCTGGATCAGATTCACCTGAAGGGCTTGTTAAAACAGATTGCCTAACATTTTAAATTCCTGAGTCAGTAGCTCTGTAGTGGAGCCCAATAATTTGCATTTCTGACAAATTCCCAGGTGATGCTGATTTTGCTGTCTGAGGACCACACTTTGAGAATCATTGTTCTAAGGCACTCAGTCTAAAATTATTTCCTCTAGTTCTGATATTAAAGGACTCTCTGATTCTAATAGGGTCAAAGGACTTTT	CTGGTTGGGGTTGGCTCCAGCCTCAAGGAGGCGGCGGGCAGCGGTTGGCCGGGAGAATCGGGCAGCCAGGTGCAGGGGGGTCTCCCCAGTGCCCACGGTGTGAGCCTGGGGACAGGCCCCTCCATCCAGCAGAGGTTCCCAGGGCTCAGGACATCCCAACCATGCCCCTTGGAAGGTCCCGGACTGTACTTCCCCACAGCAAACTGCTGACATCAGGGGTGTCACCCCATCTGTTGGTAAGACAGAGTAATGGGTCAATCTAAAGGACACAACAAGGGGGAAGGGACAACATGTAAGCTCAGAGAGAATCAAAACCTGAGGTGTTGGGAAGCTAAGTTCTGGCTCTGTGTGGCTTTAGCCAAGTGACTTTTCTGCTTTTCTCTGACTTCAGTTTCTTCCTCTGTAAAAGGAACCTGCAGCTTAATTCTCTGACATTCCAGGGCAGTGGTTTTCTCTTTTTTTTTTTTTTTTTTCTGAGACGGAGTCTCGCCCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCTCCTCCCAGGTTCACGCCATTCTCCTGCCTTAGCCTCCAGAGCAGCTGGGACTACAGGCTCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCTAGCAGTGGTTTTCTCAAACGAGTCTGGATCAGATTCACCTGAAGGGCTTGTTAAAACAGATTGCCTAACATTTTAAATTCCTGAGTCAGTAGCTCTGTAGTGGAGCCCAATAATTTGCATTTCTGACAAATTCCCAGGTGATGCTGATTTTGCTGTCTGAGGACCACACTTTGAGAATCATTGTTCTAAGGCACTCAGTCTAAAATTATTTCCTCTAGTTCTGATATTAAAGGACTCTCTGATTCTAATAGGGTCAAAGGACTTTT	-			P-0045947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	249	725	0	ENST00000375023.3:c.4756+34_4986del		p.X1586_splice	ENST00000375023	NM_004557.3	1586																																																																															
MYC	4609	MSKCC	GRCh37	8	128751169	128751169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	253	483	0	ENST00000377970.2:c.706G>T	p.Asp236Tyr	p.D236Y	ENST00000377970	NM_002467.4	236	Gat/Tat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0045949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	21	262	0	ENST00000371953.3:c.801+1G>T		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	151	472	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	242	409	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	242	409	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	242	409	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
NBN	4683	MSKCC	GRCh37	8	90971041	90971041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200297914		P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	65	245	0	ENST00000265433.3:c.1036G>A	p.Val346Met	p.V346M	ENST00000265433	NM_002485.4	346	Gtg/Atg																																																																														
WT1	7490	MSKCC	GRCh37	11	32410611	32410611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	93	380	0	ENST00000332351.3:c.1547C>T	p.Ala516Val	p.A516V	ENST00000332351	NM_024426.4	516	gCg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971178	21971178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	118	336	0	ENST00000361570.3:c.346G>A	p.Gly116Arg	p.G116R	ENST00000361570	NM_058195.3	116	Gga/Aga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2131740	2131740	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	197	635	2	ENST00000219476.3:c.3755C>A	p.Ser1252Ter	p.S1252*	ENST00000219476	NM_000548.3	1252	tCa/tAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1294420	1294420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	266	477	0	ENST00000310581.5:c.581G>A	p.Arg194Gln	p.R194Q	ENST00000310581	NM_198253.2	194	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	242	615	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	50	356	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	21	387	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	130	362	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982016	93982016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	43	211	0	ENST00000369303.4:c.1449A>C	p.Lys483Asn	p.K483N	ENST00000369303	NM_004440.3	483	aaA/aaC																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212652793	212652793	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	21	319	0	ENST00000342788.4:c.513G>A	p.Trp171Ter	p.W171*	ENST00000342788	NM_005235.2	171	tgG/tgA																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931899	68931899	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	135	441	0	ENST00000288368.4:c.329T>G	p.Leu110Arg	p.L110R	ENST00000288368	NM_024870.2	110	cTt/cGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	177	414	0	ENST00000304494.5:c.150+1G>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	177	414	0	ENST00000304494.5:c.150+1G>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
MTOR	2475	MSKCC	GRCh37	1	11314006	11314006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	88	450	0	ENST00000361445.4:c.730G>A	p.Gly244Arg	p.G244R	ENST00000361445	NM_004958.3	244	Gga/Aga																																																																														
FLT1	2321	MSKCC	GRCh37	13	28880873	28880873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	26	476	0	ENST00000282397.4:c.3757C>A	p.Pro1253Thr	p.P1253T	ENST00000282397	NM_002019.4	1253	Ccc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218598	36218598	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	92	600	0	ENST00000222270.7:c.4303-1G>A		p.X1435_splice	ENST00000222270	NM_014727.1	1435																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212652824	212652824	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	23	346	0	ENST00000342788.4:c.482T>C	p.Ile161Thr	p.I161T	ENST00000342788	NM_005235.2	161	aTt/aCt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400088	41400088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	62	337	0	ENST00000373198.4:c.671A>C	p.Lys224Thr	p.K224T	ENST00000373198	NM_133170.3	224	aAg/aCg																																																																														
AR	367	MSKCC	GRCh37	X	66941796	66941796	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	112	204	0	ENST00000374690.3:c.2440T>C	p.Phe814Leu	p.F814L	ENST00000374690	NM_000044.3	814	Ttc/Ctc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541723	187541735	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCCAATAGCAG	TTCCCAATAGCAG	CA			P-0045954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	46	310	1	ENST00000441802.2:c.6005_6017delinsTG	p.Thr2002MetfsTer5	p.T2002Mfs*5	ENST00000441802	NM_005245.3	2002	aCTGCTATTGGGAAt/aTGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	304	699	0	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																														
RB1	5925	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	72	161	0	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38944635	38944635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	172	299	1	ENST00000357387.3:c.4826G>A	p.Arg1609His	p.R1609H	ENST00000357387	NM_152756.3	1609	cGt/cAt																																																																														
ERF	2077	MSKCC	GRCh37	19	42753719	42753719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	295	694	0	ENST00000222329.4:c.545G>T	p.Gly182Val	p.G182V	ENST00000222329	NM_006494.2	182	gGc/gTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133253968	133253968	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	184	448	0	ENST00000320574.5:c.782A>T	p.Asp261Val	p.D261V	ENST00000320574	NM_006231.2	261	gAt/gTt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650720	67650720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	301	512	0	ENST00000264010.4:c.1025G>T	p.Arg342Leu	p.R342L	ENST00000264010	NM_006565.3	342	cGt/cTt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281300	15281351	+	frameshift_variant	Frame_Shift_Del	DEL	GACAGCGCCCGCCACTAGCAGTGGCAGCAGCGGGACGCTGGGTTCTGGAGGC	GACAGCGCCCGCCACTAGCAGTGGCAGCAGCGGGACGCTGGGTTCTGGAGGC	-			P-0045956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	219	678	0	ENST00000263388.2:c.4905_4956del	p.Glu1635AspfsTer53	p.E1635Dfs*53	ENST00000263388	NM_000435.2	1635	gaGCCTCCAGAACCCAGCGTCCCGCTGCTGCCACTGCTAGTGGCGGGCGCTGTC/ga																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64288912	64288912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	245	400	0	ENST00000370651.3:c.308A>G	p.His103Arg	p.H103R	ENST00000370651	NM_003463.4	103	cAt/cGt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146211	38146211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	293	581	0	ENST00000317025.8:c.3295A>G	p.Asn1099Asp	p.N1099D	ENST00000317025	NM_023034.1	1099	Aac/Gac																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978521	70978521	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	155	414	0	ENST00000276594.2:c.1132G>C	p.Val378Leu	p.V378L	ENST00000276594	NM_024504.3	378	Gtg/Ctg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0045957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	276	649	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																														
HGF	3082	MSKCC	GRCh37	7	81372707	81372707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	76	259	0	ENST00000222390.5:c.827C>A	p.Pro276His	p.P276H	ENST00000222390	NM_000601.4	276	cCt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577065	7577065	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	279	604	0	ENST00000269305.4:c.873del	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	291	aaG/aa																																																																														
RET	5979	MSKCC	GRCh37	10	43610123	43610123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	180	547	0	ENST00000355710.3:c.2075C>A	p.Ala692Asp	p.A692D	ENST00000355710	NM_020975.4	692	gCc/gAc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515212	31515212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	383	619	0	ENST00000344624.3:c.1173G>T	p.Glu391Asp	p.E391D	ENST00000344624		391	gaG/gaT																																																																														
HGF	3082	MSKCC	GRCh37	7	81392049	81392049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	37	215	0	ENST00000222390.5:c.228G>T	p.Arg76Ser	p.R76S	ENST00000222390	NM_000601.4	76	agG/agT																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856424	111856424	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	23	124	0	ENST00000341259.2:c.475A>C	p.Thr159Pro	p.T159P	ENST00000341259	NM_005475.2	159	Acc/Ccc																																																																														
CBL	867	MSKCC	GRCh37	11	119148958	119148958	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	35	295	0	ENST00000264033.4:c.1178T>A	p.Ile393Asn	p.I393N	ENST00000264033	NM_005188.3	393	aTt/aAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931648	39931648	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	233	356	0	ENST00000378444.4:c.2951T>A	p.Leu984Gln	p.L984Q	ENST00000378444	NM_001123385.1	984	cTg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	126	518	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	66	418	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428299	33428299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	98	482	0	ENST00000335858.7:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000335858	NM_133629.2	163	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653807	89653807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	71	244	0	ENST00000371953.3:c.105G>A	p.Met35Ile	p.M35I	ENST00000371953	NM_000314.4	35	atG/atA																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368258	45368258	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	76	343	0	ENST00000262160.6:c.1344G>A	p.Trp448Ter	p.W448*	ENST00000262160	NM_005901.5	448	tgG/tgA																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	55	200	0	ENST00000281708.4:c.1634A>T	p.Tyr545Phe	p.Y545F	ENST00000281708	NM_033632.3	545	tAt/tTt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191157	185191157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	71	462	1	ENST00000265026.3:c.2038C>T	p.Arg680Trp	p.R680W	ENST00000265026	NM_004721.4	680	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112173817	112173820	+	frameshift_variant	Frame_Shift_Del	DEL	TAGT	TAGT	-			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	50	276	0	ENST00000257430.4:c.2527_2530del	p.Ser843LeufsTer17	p.S843Lfs*17	ENST00000257430	NM_000038.5	842	gaTAGT/ga																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226252110	226252110	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	15	59	0	ENST00000366813.1:c.58C>G	p.Gln20Glu	p.Q20E	ENST00000366813		20	Caa/Gaa																																																																														
APC	324	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	AGA			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	39	250	0	ENST00000257430.4:c.4479_4480delinsAGA	p.Ser1495LysfsTer19	p.S1495Kfs*19	ENST00000257430	NM_000038.5	1493	acGGaa/acAGAaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140477789	140477790	+	splice_donor_variant	Splice_Site	INS	-	-	CCTGAGTAC			P-0045959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	58	345	0	ENST00000288602.6:c.1510_1517+1dup		p.X504_splice	ENST00000288602	NM_004333.4	504																																																																															
STK11	6794	MSKCC	GRCh37	19	1220715	1220715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	58	543	0	ENST00000326873.7:c.733C>T	p.Leu245Phe	p.L245F	ENST00000326873	NM_000455.4	245	Ctc/Ttc																																																																														
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	36	320	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725522	162725522	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	36	428	0	ENST00000367921.3:c.634C>G	p.Leu212Val	p.L212V	ENST00000367921	NM_006182.2	212	Ctg/Gtg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575505	64575505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	63	565	1	ENST00000337652.1:c.527G>T	p.Arg176Leu	p.R176L	ENST00000337652	NM_130803.2	176	cGg/cTg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221981	1221981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	63	604	1	ENST00000326873.7:c.896C>G	p.Ser299Cys	p.S299C	ENST00000326873	NM_000455.4	299	tCc/tGc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138551	11138551	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	64	565	0	ENST00000344626.4:c.3307T>C	p.Cys1103Arg	p.C1103R	ENST00000344626	NM_003072.3	1103	Tgc/Cgc																																																																														
ALK	238	MSKCC	GRCh37	2	29917722	29917722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	56	554	0	ENST00000389048.3:c.946C>A	p.Pro316Thr	p.P316T	ENST00000389048	NM_004304.4	316	Ccc/Acc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437884	110437884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	15	88	1	ENST00000375856.3:c.517G>T	p.Gly173Cys	p.G173C	ENST00000375856	NM_003749.2	173	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	109	404	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0045965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	92	363	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593613	55593613	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	93	365	0	ENST00000288135.5:c.1679T>A	p.Val560Asp	p.V560D	ENST00000288135	NM_000222.2	560	gTt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	14	284	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	8	575	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225338994	225338994	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	10	349	0	ENST00000264414.4:c.2275G>T	p.Glu759Ter	p.E759*	ENST00000264414	NM_003590.4	759	Gag/Tag																																																																														
CD79B	974	MSKCC	GRCh37	17	62007581	62007581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	39	581	0	ENST00000392795.3:c.286C>T	p.Arg96Cys	p.R96C	ENST00000392795	NM_001039933.1	96	Cgc/Tgc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46254677	46254677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	17	336	0	ENST00000334344.6:c.4867G>C	p.Asp1623His	p.D1623H	ENST00000334344	NM_152641.2	1623	Gat/Cat																																																																														
NF1	4763	MSKCC	GRCh37	17	29482999	29482999	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	16	211	0	ENST00000358273.4:c.61-2A>T		p.X21_splice	ENST00000358273	NM_001042492.2	21																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11101982	11101982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	49	589	0	ENST00000344626.4:c.1402C>A	p.Arg468Ser	p.R468S	ENST00000344626	NM_003072.3	468	Cgc/Agc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25458655	25458655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	32	476	0	ENST00000264709.3:c.2518A>G	p.Ile840Val	p.I840V	ENST00000264709	NM_175629.2	840	Ata/Gta																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873633	35873633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	14	228	0	ENST00000303115.3:c.589C>A	p.Pro197Thr	p.P197T	ENST00000303115	NM_002185.3	197	Ccg/Acg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180638	32180638	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	43	499	0	ENST00000375023.3:c.2489G>C	p.Cys830Ser	p.C830S	ENST00000375023	NM_004557.3	830	tGc/tCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	77	281	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	91	525	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575080	48575080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	37	214	0	ENST00000342988.3:c.274C>T	p.His92Tyr	p.H92Y	ENST00000342988	NM_005359.5	92	Cat/Tat																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464983	120464983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	37	307	0	ENST00000256646.2:c.5089G>A	p.Val1697Ile	p.V1697I	ENST00000256646	NM_024408.3	1697	Gta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445824	49445825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	228	594	0	ENST00000301067.7:c.1641dup	p.Pro548ThrfsTer3	p.P548Tfs*3	ENST00000301067	NM_003482.3	547	-/A																																																																														
POLE	5426	MSKCC	GRCh37	12	133263883	133263883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	44	228	0	ENST00000320574.5:c.19G>A	p.Gly7Arg	p.G7R	ENST00000320574	NM_006231.2	7	Ggg/Agg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45657020	45657020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	59	361	0	ENST00000407780.3:c.136G>A	p.Asp46Asn	p.D46N	ENST00000407780	NM_001283052.1	46	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112175513	112175514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	149	258	0	ENST00000257430.4:c.4224dup	p.Pro1409ThrfsTer14	p.P1409Tfs*14	ENST00000257430	NM_000038.5	1408	gaa/gAaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928223	178928225	+	missense_variant	Missense_Mutation	ONP	CTC	CTC	TTT			P-0045971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	90	287	0	ENST00000263967.3:c.1409_1411delinsTTT	p.Thr470_Pro471delinsIleSer	p.T470_P471delinsIS	ENST00000263967	NM_006218.2	470	aCTCca/aTTTca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	95	459	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	82	565	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
POLE	5426	MSKCC	GRCh37	12	133257747	133257747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	21	438	1	ENST00000320574.5:c.181G>A	p.Gly61Ser	p.G61S	ENST00000320574	NM_006231.2	61	Ggc/Agc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99486220	99486220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	22	558	0	ENST00000268035.6:c.3526G>T	p.Val1176Leu	p.V1176L	ENST00000268035	NM_000875.3	1176	Gtg/Ttg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210809	2210809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	46	412	0	ENST00000398665.3:c.1306C>A	p.Leu436Met	p.L436M	ENST00000398665	NM_032482.2	436	Ctg/Atg																																																																														
BRAF	673	MSKCC	GRCh37	7	140550012	140550012	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0045972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	39	230	0	ENST00000288602.6:c.139G>C	p.Val47Leu	p.V47L	ENST00000288602	NM_004333.4	47	Gtg/Ctg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	211	681	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	48	201	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29527614	29527614	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	116	380	0	ENST00000358273.4:c.1062+1G>A		p.X354_splice	ENST00000358273	NM_001042492.2	354																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118370594	118370594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	33	201	0	ENST00000534358.1:c.6124G>A	p.Asp2042Asn	p.D2042N	ENST00000534358	NM_005933.3	2042	Gac/Aac																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968954	15968967	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGGGTAACCTGG	CTTGGGTAACCTGG	-			P-0045983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	97	423	0	ENST00000268712.3:c.4783_4796del	p.Pro1595SerfsTer17	p.P1595Sfs*17	ENST00000268712	NM_006311.3	1595	CCAGGTTACCCAAGt/t																																																																														
BCL6	604	MSKCC	GRCh37	3	187449641	187449641	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	83	363	0	ENST00000232014.4:c.239del	p.Pro80LeufsTer26	p.P80Lfs*26	ENST00000232014	NM_001130845.1	80	cCt/ct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242758	16242758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	179	391	0	ENST00000375759.3:c.1379G>A	p.Arg460His	p.R460H	ENST00000375759	NM_015001.2	460	cGc/cAc																																																																														
SDHB	6390	MSKCC	GRCh37	1	17371320	17371320	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	201	435	0	ENST00000375499.3:c.136C>T	p.Arg46Ter	p.R46*	ENST00000375499	NM_003000.2	46	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	224	428	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106803	27106804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	239	586	0	ENST00000324856.7:c.6420dup	p.Phe2141LeufsTer9	p.F2141Lfs*9	ENST00000324856	NM_006015.4	2138	-/C																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46725734	46725734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	62	426	0	ENST00000371975.4:c.374del	p.Pro125ArgfsTer2	p.P125Rfs*2	ENST00000371975	NM_003579.3	124	Ccc/cc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162737052	162737052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	179	378	0	ENST00000367921.3:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000367921	NM_006182.2	399	cGg/cAg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456756	32456756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	260	462	0	ENST00000332351.3:c.136G>A	p.Ala46Thr	p.A46T	ENST00000332351	NM_024426.4	46	Gcc/Acc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	146	825	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
PGR	5241	MSKCC	GRCh37	11	100912716	100912716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	163	363	0	ENST00000325455.5:c.2606G>A	p.Arg869His	p.R869H	ENST00000325455	NM_001202474.3	869	cGt/cAt																																																																														
YAP1	10413	MSKCC	GRCh37	11	102033297	102033297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	221	424	0	ENST00000282441.5:c.683C>T	p.Ala228Val	p.A228V	ENST00000282441	NM_001130145.2	228	gCt/gTt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498215	498215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	64	272	1	ENST00000399788.2:c.43C>T	p.Pro15Ser	p.P15S	ENST00000399788	NM_001042603.1	15	Cca/Tca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18524207	18524207	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	34	450	0	ENST00000266497.5:c.1719T>G	p.Asn573Lys	p.N573K	ENST00000266497		573	aaT/aaG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444377	49444378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	181	598	0	ENST00000301067.7:c.2993dup	p.Met999TyrfsTer69	p.M999Yfs*69	ENST00000301067	NM_003482.3	998	cct/ccCt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112610	115112610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	293	676	0	ENST00000257566.3:c.1130C>T	p.Ala377Val	p.A377V	ENST00000257566	NM_016569.3	377	gCc/gTc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	287	737	14	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
POLE	5426	MSKCC	GRCh37	12	133202834	133202834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	255	584	0	ENST00000320574.5:c.6400G>A	p.Asp2134Asn	p.D2134N	ENST00000320574	NM_006231.2	2134	Gat/Aat																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975440	26975440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	140	299	0	ENST00000381527.3:c.1066C>T	p.Arg356Ter	p.R356*	ENST00000381527	NM_001260.1	356	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911073	32911074	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	37	281	0	ENST00000380152.3:c.2588dup	p.Asn863LysfsTer18	p.N863Kfs*18	ENST00000380152		861	caa/cAaa																																																																														
MGA	23269	MSKCC	GRCh37	15	42021395	42021395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	54	265	0	ENST00000219905.7:c.3691T>C	p.Tyr1231His	p.Y1231H	ENST00000219905	NM_001164273.1	1231	Tac/Cac																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707894	43707894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	325	610	0	ENST00000382044.4:c.4987C>T	p.Arg1663Cys	p.R1663C	ENST00000382044	NM_001141980.1	1663	Cgt/Tgt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724657	43724657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	249	596	0	ENST00000382044.4:c.3410G>A	p.Arg1137Gln	p.R1137Q	ENST00000382044	NM_001141980.1	1137	cGg/cAg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748999	43748999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	319	685	0	ENST00000382044.4:c.1807A>G	p.Ser603Gly	p.S603G	ENST00000382044	NM_001141980.1	603	Agt/Ggt																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2090156	2090156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	341	803	0	ENST00000219066.1:c.793G>T	p.Ala265Ser	p.A265S	ENST00000219066	NM_002528.5	265	Gcc/Tcc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121536	2121536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	317	714	0	ENST00000219476.3:c.1865G>A	p.Arg622Gln	p.R622Q	ENST00000219476	NM_000548.3	622	cGg/cAg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	278	534	0	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	173	383	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829700	72829700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	236	577	0	ENST00000268489.5:c.6881G>A	p.Arg2294Gln	p.R2294Q	ENST00000268489	NM_006885.3	2294	cGa/cAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347173	89347173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	253	530	0	ENST00000301030.4:c.5777del	p.Pro1926ArgfsTer37	p.P1926Rfs*37	ENST00000301030	NM_001256183.1	1926	cCg/cg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	122	680	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618570	37618572	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	240	443	0	ENST00000447079.4:c.248_250delTCT	p.Phe83del	p.F83del	ENST00000447079	NM_015083.1	82	acCTTc/acc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	288	685	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533700	63533700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	148	591	0	ENST00000307078.5:c.1454G>A	p.Gly485Asp	p.G485D	ENST00000307078	NM_004655.3	485	gGc/gAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554738	63554738	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	67	352	0	ENST00000307078.5:c.1A>C	p.Met1?	p.M1?	ENST00000307078	NM_004655.3	1	Atg/Ctg																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526447	66526447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	188	385	0	ENST00000358598.2:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000358598	NM_212471.2	335	Cgt/Tgt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39623715	39623715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	114	281	0	ENST00000262039.4:c.2122G>A	p.Ala708Thr	p.A708T	ENST00000262039	NM_002647.2	708	Gca/Aca																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39637885	39637885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200000040		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	155	360	0	ENST00000262039.4:c.2302C>T	p.Arg768Trp	p.R768W	ENST00000262039	NM_002647.2	768	Cgg/Tgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217776	2217777	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	258	630	0	ENST00000398665.3:c.2555_2556del	p.Glu852AlafsTer57	p.E852Afs*57	ENST00000398665	NM_032482.2	850	ctGAga/ctga																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599976	10599976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	298	781	0	ENST00000171111.5:c.1600G>A	p.Val534Met	p.V534M	ENST00000171111	NM_203500.1	534	Gtg/Atg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602358	10602358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	361	726	0	ENST00000171111.5:c.1220C>T	p.Ala407Val	p.A407V	ENST00000171111	NM_203500.1	407	gCc/gTc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11030342	11030344	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	225	492	0	ENST00000327064.4:c.1094_1096del	p.Gly365del	p.G365del	ENST00000327064	NM_199141.1	364	gaAGGa/gaa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967792	18967792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	353	759	2	ENST00000262803.5:c.1931C>T	p.Pro644Leu	p.P644L	ENST00000262803	NM_002911.3	644	cCg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210420	36210420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	91	581	0	ENST00000222270.7:c.413G>A	p.Arg138His	p.R138H	ENST00000222270	NM_014727.1	138	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214082	36214082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	342	788	0	ENST00000222270.7:c.2908C>T	p.Arg970Trp	p.R970W	ENST00000222270	NM_014727.1	970	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214749	36214749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	261	557	0	ENST00000222270.7:c.3175G>A	p.Val1059Met	p.V1059M	ENST00000222270	NM_014727.1	1059	Gtg/Atg																																																																														
AKT2	208	MSKCC	GRCh37	19	40762855	40762855	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	84	576	0	ENST00000392038.2:c.153del	p.Leu52Ter	p.L52*	ENST00000392038	NM_001626.4	51	ccC/cc																																																																														
AXL	558	MSKCC	GRCh37	19	41765717	41765717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	249	569	2	ENST00000301178.4:c.2593C>T	p.Arg865Cys	p.R865C	ENST00000301178	NM_021913.4	865	Cgc/Tgc																																																																														
ERF	2077	MSKCC	GRCh37	19	42752859	42752859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	362	856	0	ENST00000222329.4:c.1405G>A	p.Gly469Ser	p.G469S	ENST00000222329	NM_006494.2	469	Ggc/Agc																																																																														
CIC	23152	MSKCC	GRCh37	19	42796905	42796906	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	366	873	0	ENST00000575354.2:c.3365_3366delTG	p.Val1122GlyfsTer28	p.V1122Gfs*28	ENST00000575354	NM_015125.3	1121	acTGtg/actg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797778	42797778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	124	709	1	ENST00000575354.2:c.3830G>A	p.Arg1277His	p.R1277H	ENST00000575354	NM_015125.3	1277	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52724296	52724297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	62	600	0	ENST00000322088.6:c.1429dup	p.Trp477LeufsTer34	p.W477Lfs*34	ENST00000322088	NM_014225.5	476	-/T																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	262	572	9	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31381402	31381402	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	126	291	0	ENST00000328111.2:c.1126+1G>A		p.X376_splice	ENST00000328111	NM_006892.3	376																																																																															
GNAS	2778	MSKCC	GRCh37	20	57478739	57478739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	133	353	0	ENST00000371085.3:c.325G>A	p.Ala109Thr	p.A109T	ENST00000371085	NM_000516.4	109	Gcc/Acc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	142	374	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
RAF1	5894	MSKCC	GRCh37	3	12650824	12650824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs773801570		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	48	294	1	ENST00000251849.4:c.331C>T	p.Arg111Cys	p.R111C	ENST00000251849	NM_002880.3	111	Cgc/Tgc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	74	193	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	144	263	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509927	187509927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	133	297	0	ENST00000441802.2:c.13586C>T	p.Ala4529Val	p.A4529V	ENST00000441802	NM_005245.3	4529	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540501	187540501	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	41	305	0	ENST00000441802.2:c.7239del	p.Ala2414ProfsTer9	p.A2414Pfs*9	ENST00000441802	NM_005245.3	2413	aaA/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1255459	1255459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	105	813	1	ENST00000310581.5:c.3100C>T	p.Arg1034Cys	p.R1034C	ENST00000310581	NM_198253.2	1034	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1278779	1278779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	262	866	1	ENST00000310581.5:c.2263G>A	p.Val755Ile	p.V755I	ENST00000310581	NM_198253.2	755	Gtc/Atc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31468062	31468062	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	172	375	0	ENST00000344624.3:c.2350T>C	p.Tyr784His	p.Y784H	ENST00000344624		784	Tat/Cat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38963007	38963007	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	22	211	0	ENST00000357387.3:c.1537C>T	p.Arg513Ter	p.R513*	ENST00000357387	NM_152756.3	513	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685331	86685331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	62	110	0	ENST00000274376.6:c.3047G>A	p.Arg1016His	p.R1016H	ENST00000274376	NM_002890.2	1016	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112116587	112116587	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	39	253	0	ENST00000257430.4:c.636del	p.Lys212AsnfsTer7	p.K212Nfs*7	ENST00000257430	NM_000038.5	211	gAa/ga																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149436912	149436912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	262	610	0	ENST00000286301.3:c.2257C>T	p.Arg753Trp	p.R753W	ENST00000286301	NM_005211.3	753	Cgg/Tgg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180051013	180051013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	289	712	0	ENST00000261937.6:c.1470G>T	p.Arg490Ser	p.R490S	ENST00000261937	NM_182925.4	490	agG/agT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168725	32168725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	281	649	0	ENST00000375023.3:c.4198C>T	p.Arg1400Cys	p.R1400C	ENST00000375023	NM_004557.3	1400	Cgc/Tgc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288983	33288983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	89	453	0	ENST00000374542.5:c.569G>A	p.Arg190His	p.R190H	ENST00000374542	NM_001141970.1	190	cGt/cAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955064	93955064	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151105732		P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	57	222	0	ENST00000369303.4:c.2834C>T	p.Thr945Met	p.T945M	ENST00000369303	NM_004440.3	945	aCg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151900081	151900081	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	155	265	0	ENST00000262189.6:c.4030del	p.Ile1344Ter	p.I1344*	ENST00000262189	NM_170606.2	1344	Ata/ta																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372025	55372025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	162	318	2	ENST00000297316.4:c.715G>A	p.Ala239Thr	p.A239T	ENST00000297316	NM_022454.3	239	Gcc/Acc																																																																														
PAX5	5079	MSKCC	GRCh37	9	36840621	36840621	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	240	542	0	ENST00000358127.4:c.1112A>G	p.Tyr371Cys	p.Y371C	ENST00000358127	NM_001280556.1	371	tAt/tGt																																																																														
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	289	675	0	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413100	139413100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	328	699	0	ENST00000277541.6:c.1042G>A	p.Ala348Thr	p.A348T	ENST00000277541	NM_017617.3	348	Gcc/Acc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411822	63411822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	147	760	0	ENST00000330258.3:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000330258	NM_152424.3	449	Gcc/Acc																																																																														
AR	367	MSKCC	GRCh37	X	66766585	66766585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	138	666	1	ENST00000374690.3:c.1597G>A	p.Gly533Arg	p.G533R	ENST00000374690	NM_000044.3	533	Gga/Aga																																																																														
MED12	9968	MSKCC	GRCh37	X	70361128	70361133	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-			P-0045984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	77	604	0	ENST00000374080.3:c.6324_6329del	p.Gln2114_Gln2115del	p.Q2114_Q2115del	ENST00000374080		2106	CAGCAG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0045987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	188	593	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29553422	29553451	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CAAATATATGTCTTCCACCCTTGACTCTCA	CAAATATATGTCTTCCACCCTTGACTCTCA	-			P-0045987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	180	292	0	ENST00000358273.4:c.2002-31_2002-2del		p.X668_splice	ENST00000358273	NM_001042492.2	668																																																																															
ACVR1	90	MSKCC	GRCh37	2	158630662	158630662	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	103	272	0	ENST00000263640.3:c.581C>G	p.Ser194Cys	p.S194C	ENST00000263640	NM_001105.4	194	tCt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	67	320	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ATR	545	MSKCC	GRCh37	3	142272512	142272512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	32	374	0	ENST00000350721.4:c.2603C>T	p.Thr868Ile	p.T868I	ENST00000350721	NM_001184.3	868	aCc/aTc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321349	1321349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	45	448	0	ENST00000381566.1:c.406G>C	p.Val136Leu	p.V136L	ENST00000381566		136	Gtg/Ctg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	58	302	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	207	561	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276250	15276250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	402	605	2	ENST00000263388.2:c.5744G>A	p.Arg1915His	p.R1915H	ENST00000263388	NM_000435.2	1915	cGc/cAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911520	134911520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756316035		P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	179	385	0	ENST00000398015.3:c.1985G>A	p.Arg662His	p.R662H	ENST00000398015	NM_004441.4	662	cGt/cAt																																																																														
MED12	9968	MSKCC	GRCh37	X	70357070	70357070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	208	692	0	ENST00000374080.3:c.5585G>A	p.Arg1862His	p.R1862H	ENST00000374080		1862	cGc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938961	76938961	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	102	395	0	ENST00000373344.5:c.1787C>G	p.Ser596Cys	p.S596C	ENST00000373344	NM_000489.3	596	tCt/tGt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073621	8073621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	274	321	0	ENST00000377482.5:c.1038G>A	p.Met346Ile	p.M346I	ENST00000377482	NM_018948.3	346	atG/atA																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604683	48604683	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	86	271	0	ENST00000342988.3:c.1506del	p.Met503Ter	p.M503*	ENST00000342988	NM_005359.5	502	aGg/ag																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275767	38275767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	54	432	0	ENST00000425967.3:c.1502G>A	p.Arg501His	p.R501H	ENST00000425967	NM_001174067.1	501	cGc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76776321	76776321	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	120	441	0	ENST00000373344.5:c.7145T>A	p.Leu2382His	p.L2382H	ENST00000373344	NM_000489.3	2382	cTt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	44	95	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	54	283	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	13	405	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	191	482	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	94	478	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
MAX	4149	MSKCC	GRCh37	14	65560514	65560514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	139	365	0	ENST00000358664.4:c.83A>G	p.His28Arg	p.H28R	ENST00000358664	NM_002382.4	28	cAt/cGt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	82	549	3	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	36	305	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372092	55372093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	75	332	0	ENST00000297316.4:c.788dup	p.Glu264GlyfsTer101	p.E264Gfs*101	ENST00000297316	NM_022454.3	261	ggc/ggCc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100043	157100043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	14	14	0	ENST00000346085.5:c.980G>C	p.Gly327Ala	p.G327A	ENST00000346085	NM_020732.3	327	gGa/gCa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624294	89624295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	85	303	0	ENST00000371953.3:c.69dupA	p.Asp24ArgfsTer20	p.D24Rfs*20	ENST00000371953	NM_000314.4	23	tta/ttAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	125	350	4	ENST00000264010.4:c.950_951delCA	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	154	868	3	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047942	180047942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138368337		P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	297	830	2	ENST00000261937.6:c.2233C>T	p.Arg745Cys	p.R745C	ENST00000261937	NM_182925.4	745	Cgc/Tgc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	288	780	2	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624290	89624290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	89	297	0	ENST00000371953.3:c.64G>T	p.Asp22Tyr	p.D22Y	ENST00000371953	NM_000314.4	22	Gac/Tac																																																																														
MED12	9968	MSKCC	GRCh37	X	70361098	70361103	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	102	471	1	ENST00000374080.3:c.6303_6308del	p.Gln2114_Gln2115del	p.Q2114_Q2115del	ENST00000374080		2096	CAGCAG/-																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435296	18435296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	37	130	0	ENST00000266497.5:c.281G>A	p.Arg94His	p.R94H	ENST00000266497		94	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653845	89653845	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	23	51	0	ENST00000371953.3:c.143A>G	p.Asn48Ser	p.N48S	ENST00000371953	NM_000314.4	48	aAc/aGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434491	49434491	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	97	814	0	ENST00000301067.7:c.7062del	p.Ala2355ProfsTer29	p.A2355Pfs*29	ENST00000301067	NM_003482.3	2354	ccT/cc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120791128	120791128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	133	673	0	ENST00000257552.2:c.707C>T	p.Ala236Val	p.A236V	ENST00000257552	NM_002442.3	236	gCc/gTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892212	9892212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	154	525	2	ENST00000330684.3:c.2278G>A	p.Gly760Ser	p.G760S	ENST00000330684	NM_001134407.1	760	Ggt/Agt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50820822	50820822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	23	84	0	ENST00000398568.2:c.1997T>C	p.Val666Ala	p.V666A	ENST00000398568	NM_001042412.1	666	gTg/gCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828914	72828914	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	188	505	0	ENST00000268489.5:c.7667del	p.Ala2556GlyfsTer56	p.A2556Gfs*56	ENST00000268489	NM_006885.3	2556	gCg/gg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3121037	3121037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	202	760	1	ENST00000078429.4:c.940G>A	p.Val314Met	p.V314M	ENST00000078429	NM_002067.2	314	Gtg/Atg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128030455	128030455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	167	367	0	ENST00000285398.2:c.1813A>G	p.Ile605Val	p.I605V	ENST00000285398	NM_000122.1	605	Atc/Gtc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685322	86685322	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	49	129	0	ENST00000274376.6:c.3038G>C	p.Ser1013Thr	p.S1013T	ENST00000274376	NM_002890.2	1013	aGt/aCt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864332	151864332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	104	308	0	ENST00000262189.6:c.9649C>T	p.Arg3217Cys	p.R3217C	ENST00000262189	NM_170606.2	3217	Cgt/Tgt																																																																														
SYK	6850	MSKCC	GRCh37	9	93657859	93657859	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	81	412	0	ENST00000375746.1:c.1885T>A	p.Tyr629Asn	p.Y629N	ENST00000375746	NM_001174167.1	629	Tac/Aac																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250028	110250028	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	60	620	0	ENST00000374672.4:c.647A>C	p.Gln216Pro	p.Q216P	ENST00000374672	NM_004235.4	216	cAg/cCg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224226	53224226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	141	746	1	ENST00000375401.3:c.3325G>A	p.Gly1109Ser	p.G1109S	ENST00000375401	NM_004187.3	1109	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0045993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	504	601	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644715	134644715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	271	399	0	ENST00000398015.3:c.116C>T	p.Ala39Val	p.A39V	ENST00000398015	NM_004441.4	39	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	209	656	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																														
JAK1	3716	MSKCC	GRCh37	1	65304151	65304160	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAATCTGA	ACAAATCTGA	-			P-0045994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	98	134	0	ENST00000342505.4:c.2955_2964del	p.Gln986ArgfsTer29	p.Q986Rfs*29	ENST00000342505	NM_002227.2	985	gtTCAGATTTGT/gt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344339	118344368	+	inframe_deletion	In_Frame_Del	DEL	CTCCGGCAGAGCCATTTTCATCAAGTAGTC	CTCCGGCAGAGCCATTTTCATCAAGTAGTC	-			P-0045994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	69	215	0	ENST00000534358.1:c.2467_2496del	p.Pro823_Pro832del	p.P823_P832del	ENST00000534358	NM_005933.3	822	gCTCCGGCAGAGCCATTTTCATCAAGTAGTCct/gct																																																																														
BRCA1	672	MSKCC	GRCh37	17	41209099	41209100	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0045994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	161	428	0	ENST00000357654.3:c.5246_5247del	p.Pro1749GlnfsTer80	p.P1749Qfs*80	ENST00000357654	NM_007294.3	1749	cCA/c																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371756	45371757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	129	162	0	ENST00000262160.6:c.1234dup	p.Cys412LeufsTer28	p.C412Lfs*28	ENST00000262160	NM_005901.5	412	tgc/tTgc																																																																														
BCL2	596	MSKCC	GRCh37	18	60985647	60985647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	10	71	0	ENST00000333681.4:c.253G>T	p.Ala85Ser	p.A85S	ENST00000333681		85	Gcg/Tcg																																																																														
CD274	29126	MSKCC	GRCh37	9	5463115	5463115	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	63	102	0	ENST00000381577.3:c.676A>C	p.Ile226Leu	p.I226L	ENST00000381577	NM_014143.3	226	Atc/Ctc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	978	712	1	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																														
TCF3	6929	MSKCC	GRCh37	19	1620984	1620984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1433	269	870	1	ENST00000344749.5:c.1076C>T	p.Ser359Phe	p.S359F	ENST00000344749	NM_001136139.2	359	tCc/tTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448319	56448319	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	278	646	0	ENST00000407977.2:c.328G>T	p.Glu110Ter	p.E110*	ENST00000407977		110	Gag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911010	32911010	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	109	112	0	ENST00000380152.3:c.2518A>G	p.Met840Val	p.M840V	ENST00000380152		840	Atg/Gtg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076799	72076799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	266	348	0	ENST00000357731.5:c.698G>A	p.Gly233Asp	p.G233D	ENST00000357731	NM_173808.2	233	gGc/gAc																																																																														
SDHD	6392	MSKCC	GRCh37	11	111957641	111957641	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	222	469	0	ENST00000375549.3:c.10C>G	p.Leu4Val	p.L4V	ENST00000375549	NM_003002.3	4	Ctc/Gtc																																																																														
POLE	5426	MSKCC	GRCh37	12	133218967	133218967	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	540	682	0	ENST00000320574.5:c.4969A>G	p.Ile1657Val	p.I1657V	ENST00000320574	NM_006231.2	1657	Att/Gtt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041174	29041174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	151	409	0	ENST00000282397.4:c.254G>C	p.Gly85Ala	p.G85A	ENST00000282397	NM_002019.4	85	gGc/gCc																																																																														
NF1	4763	MSKCC	GRCh37	17	29486062	29486062	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	16	73	0	ENST00000358273.4:c.239A>G	p.Tyr80Cys	p.Y80C	ENST00000358273	NM_001042492.2	80	tAt/tGt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152128	11152130	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	594	474	0	ENST00000344626.4:c.4318_4320del	p.Gln1440del	p.Q1440del	ENST00000344626	NM_003072.3	1439	aAGCag/aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45864787	45864787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	210	601	0	ENST00000391945.4:c.1232C>T	p.Ala411Val	p.A411V	ENST00000391945	NM_000400.3	411	gCc/gTc																																																																														
ALK	238	MSKCC	GRCh37	2	29519882	29519882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	512	475	0	ENST00000389048.3:c.1689C>A	p.Asn563Lys	p.N563K	ENST00000389048	NM_004304.4	563	aaC/aaA																																																																														
SDHA	6389	MSKCC	GRCh37	5	225561	225561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	37	135	0	ENST00000264932.6:c.340A>G	p.Met114Val	p.M114V	ENST00000264932	NM_004168.2	114	Atg/Gtg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94128997	94128997	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	157	304	0	ENST00000369303.4:c.63T>G	p.Phe21Leu	p.F21L	ENST00000369303	NM_004440.3	21	ttT/ttG																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372025	55372025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	497	288	0	ENST00000297316.4:c.715G>T	p.Ala239Ser	p.A239S	ENST00000297316	NM_022454.3	239	Gcc/Tcc																																																																														
BTK	695	MSKCC	GRCh37	X	100608226	100608226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	135	211	0	ENST00000308731.7:c.1864G>C	p.Ala622Pro	p.A622P	ENST00000308731	NM_000061.2	622	Gct/Cct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	39	329	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665163	138665163	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519865		P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	699	514	0	ENST00000330315.3:c.402C>G	p.Cys134Trp	p.C134W	ENST00000330315	NM_023067.3	134	tgC/tgG																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1349	111	881	4	ENST00000346208.3:c.404delC	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																														
NF1	4763	MSKCC	GRCh37	17	29588875	29588875	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	30	186	0	ENST00000358273.4:c.4724G>T	p.Arg1575Met	p.R1575M	ENST00000358273	NM_001042492.2	1575	aGg/aTg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866468	42866468	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs61735790		P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	201	710	0	ENST00000398585.3:c.164A>G	p.His55Arg	p.H55R	ENST00000398585	NM_001135099.1	55	cAt/cGt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	359996	359996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	115	709	0	ENST00000262320.3:c.1093C>T	p.Arg365Trp	p.R365W	ENST00000262320	NM_003502.3	365	Cgg/Tgg																																																																														
BLM	641	MSKCC	GRCh37	15	91304375	91304375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	47	300	0	ENST00000355112.3:c.1772G>T	p.Arg591Leu	p.R591L	ENST00000355112	NM_000057.2	591	cGg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	105	415	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1803117	1803117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	156	713	0	ENST00000260795.2:c.469G>A	p.Glu157Lys	p.E157K	ENST00000260795		157	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878785	151878785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	88	369	0	ENST00000262189.6:c.6160C>G	p.Gln2054Glu	p.Q2054E	ENST00000262189	NM_170606.2	2054	Cag/Gag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239382	123239382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	30	326	0	ENST00000358487.5:c.2455G>T	p.Val819Phe	p.V819F	ENST00000358487	NM_000141.4	819	Gtt/Ttt																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156655	2156655	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	202	648	0	ENST00000434045.2:c.267C>A	p.Cys89Ter	p.C89*	ENST00000434045	NM_001127598.1	89	tgC/tgA																																																																														
ATM	472	MSKCC	GRCh37	11	108115514	108115514	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	22	175	1	ENST00000278616.4:c.663-1G>T		p.X221_splice	ENST00000278616	NM_000051.3	221																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18534755	18534755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	89	359	0	ENST00000266497.5:c.1813G>T	p.Val605Leu	p.V605L	ENST00000266497		605	Gta/Tta																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864309	57864309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	153	621	1	ENST00000228682.2:c.1786G>T	p.Ala596Ser	p.A596S	ENST00000228682	NM_005269.2	596	Gcc/Tcc																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2097785	2097785	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	158	550	0	ENST00000219066.1:c.64A>C	p.Ser22Arg	p.S22R	ENST00000219066	NM_002528.5	22	Agc/Cgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778938	3778938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	125	541	0	ENST00000262367.5:c.6110G>A	p.Arg2037Lys	p.R2037K	ENST00000262367	NM_004380.2	2037	aGg/aAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821611	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCCGCCGCCGCC	GCCGCCGCCGCCGCCGCC	-			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	19	81	0	ENST00000268489.5:c.10564_10581del	p.Gly3522_Gly3527del	p.G3522_G3527del	ENST00000268489	NM_006885.3	3522	GGCGGCGGCGGCGGCGGC/-																																																																														
RARA	5914	MSKCC	GRCh37	17	38487529	38487529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	192	534	1	ENST00000254066.5:c.59C>T	p.Pro20Leu	p.P20L	ENST00000254066	NM_000964.3	20	cCg/cTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243882	41243882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	73	440	0	ENST00000357654.3:c.3666G>T	p.Glu1222Asp	p.E1222D	ENST00000357654	NM_007294.3	1222	gaG/gaT																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435200	56435200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	167	515	0	ENST00000407977.2:c.1937G>T	p.Ser646Ile	p.S646I	ENST00000407977		646	aGc/aTc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858356	59858356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	10	238	0	ENST00000259008.2:c.1639G>A	p.Asp547Asn	p.D547N	ENST00000259008	NM_032043.2	547	Gat/Aat																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733240	74733240	+	start_lost	Translation_Start_Site	SNP	C	C	G			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	81	469	0	ENST00000359995.5:c.3G>C	p.Met1?	p.M1?	ENST00000359995	NM_001195427.1	1	atG/atC																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5245846	5245846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	277	830	0	ENST00000357368.4:c.929C>T	p.Thr310Ile	p.T310I	ENST00000357368	NM_002850.3	310	aCc/aTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098551	11098551	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	397	540	0	ENST00000344626.4:c.1069A>T	p.Lys357Ter	p.K357*	ENST00000344626	NM_003072.3	357	Aag/Tag																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17387354	17387354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	464	851	1	ENST00000359435.4:c.620C>T	p.Pro207Leu	p.P207L	ENST00000359435	NM_001033549.1	207	cCg/cTg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18277036	18277036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	137	404	0	ENST00000222254.8:c.1483G>T	p.Gly495Cys	p.G495C	ENST00000222254	NM_005027.3	495	Ggc/Tgc																																																																														
ALK	238	MSKCC	GRCh37	2	29551215	29551215	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	149	466	0	ENST00000389048.3:c.1414+1G>T		p.X472_splice	ENST00000389048	NM_004304.4	472																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735467	204735467	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	42	381	0	ENST00000302823.3:c.268A>T	p.Met90Leu	p.M90L	ENST00000302823	NM_005214.4	90	Atg/Ttg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793415	242793415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	162	660	0	ENST00000334409.5:c.662T>A	p.Val221Glu	p.V221E	ENST00000334409	NM_005018.2	221	gTg/gAg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023803	31023803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	236	545	0	ENST00000375687.4:c.3288G>T	p.Met1096Ile	p.M1096I	ENST00000375687	NM_015338.5	1096	atG/atT																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62324294	62324294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	166	783	0	ENST00000508582.2:c.2861C>T	p.Ala954Val	p.A954V	ENST00000508582		954	gCc/gTc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421258	12421258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	54	566	0	ENST00000287820.6:c.138C>G	p.Ser46Arg	p.S46R	ENST00000287820	NM_015869.4	46	agC/agG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947808	178947808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	18	204	0	ENST00000263967.3:c.2683G>A	p.Asp895Asn	p.D895N	ENST00000263967	NM_006218.2	895	Gac/Aac																																																																														
TP63	8626	MSKCC	GRCh37	3	189607174	189607174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	186	645	0	ENST00000264731.3:c.1553G>T	p.Gly518Val	p.G518V	ENST00000264731	NM_003722.4	518	gGa/gTa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808380	1808380	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	271	892	0	ENST00000260795.2:c.2138T>C	p.Met713Thr	p.M713T	ENST00000260795		713	aTg/aCg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247306	153247306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	60	264	0	ENST00000281708.4:c.1496G>T	p.Gly499Val	p.G499V	ENST00000281708	NM_033632.3	499	gGt/gTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522567	187522567	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	18	322	0	ENST00000441802.2:c.11496G>C	p.Met3832Ile	p.M3832I	ENST00000441802	NM_005245.3	3832	atG/atC																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38959992	38959992	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	40	162	0	ENST00000357387.3:c.1940A>G	p.Gln647Arg	p.Q647R	ENST00000357387	NM_152756.3	647	cAa/cGa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39074242	39074242	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	176	293	0	ENST00000357387.3:c.68A>T	p.Glu23Val	p.E23V	ENST00000357387	NM_152756.3	23	gAg/gTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	80040407	80040407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	42	375	0	ENST00000265081.6:c.1736G>T	p.Trp579Leu	p.W579L	ENST00000265081	NM_002439.4	579	tGg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112173666	112173666	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	38	253	0	ENST00000257430.4:c.2375A>T	p.Lys792Met	p.K792M	ENST00000257430	NM_000038.5	792	aAg/aTg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924477	131924477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	36	258	0	ENST00000265335.6:c.1150G>C	p.Glu384Gln	p.E384Q	ENST00000265335		384	Gag/Cag																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149513324	149513324	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	87	405	0	ENST00000261799.4:c.760-1G>T		p.X254_splice	ENST00000261799	NM_002609.3	254																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149515222	149515222	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	167	665	0	ENST00000261799.4:c.260T>A	p.Leu87Gln	p.L87Q	ENST00000261799	NM_002609.3	87	cTg/cAg																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26021009	26021009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	41	320	0	ENST00000357647.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000357647	NM_003529.2	98	Gag/Aag																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997759	149997759	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	190	404	0	ENST00000253339.5:c.2708A>T	p.Gln903Leu	p.Q903L	ENST00000253339		903	cAg/cTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508328	106508328	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	74	315	0	ENST00000359195.3:c.322G>T	p.Glu108Ter	p.E108*	ENST00000359195	NM_002649.2	108	Gag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873453	151873453	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	115	356	0	ENST00000262189.6:c.9085C>T	p.Gln3029Ter	p.Q3029*	ENST00000262189	NM_170606.2	3029	Caa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340360	8340360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	74	383	0	ENST00000356435.5:c.5236C>A	p.Leu1746Met	p.L1746M	ENST00000356435		1746	Ctg/Atg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341867	8341867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	29	366	0	ENST00000356435.5:c.4773G>T	p.Gln1591His	p.Q1591H	ENST00000356435		1591	caG/caT																																																																														
ATRX	546	MSKCC	GRCh37	X	76812945	76812945	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	37	146	0	ENST00000373344.5:c.6676A>T	p.Arg2226Trp	p.R2226W	ENST00000373344	NM_000489.3	2226	Agg/Tgg																																																																														
BTK	695	MSKCC	GRCh37	X	100613313	100613313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	68	226	0	ENST00000308731.7:c.1087C>A	p.Gln363Lys	p.Q363K	ENST00000308731	NM_000061.2	363	Cag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29496914	29496916	+	stop_gained	Nonsense_Mutation	ONP	AGG	AGG	TGT			P-0045996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	11	98	0	ENST00000358273.4:c.485_487delinsTGT	p.Gln162_Glu163delinsLeuTer	p.Q162_E163delinsL*	ENST00000358273	NM_001042492.2	162	cAGGaa/cTGTaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0045997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	66	301	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584497	48584497	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0045997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	69	259	0	ENST00000342988.3:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000342988	NM_005359.5	224	Cag/Tag																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939086	36939086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	121	685	1	ENST00000361632.4:c.623C>T	p.Ala208Val	p.A208V	ENST00000361632		208	gCg/gTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438161	56438161	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	139	607	0	ENST00000407977.2:c.832G>T	p.Glu278Ter	p.E278*	ENST00000407977		278	Gag/Tag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0045998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	407	407	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127933377	127933377	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	118	410	0	ENST00000373547.4:c.158A>T	p.Asp53Val	p.D53V	ENST00000373547	NM_002721.4	53	gAt/gTt																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4101022	4101022	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	156	500	0	ENST00000262948.5:c.700A>C	p.Met234Leu	p.M234L	ENST00000262948	NM_030662.3	234	Atg/Ctg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	22	363	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	60	844	1	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	11	235	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487930	56487930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	47	575	0	ENST00000267101.3:c.1661C>T	p.Pro554Leu	p.P554L	ENST00000267101	NM_001982.3	554	cCg/cTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222119	2222119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	41	969	0	ENST00000398665.3:c.2951C>T	p.Thr984Met	p.T984M	ENST00000398665	NM_032482.2	984	aCg/aTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	171	348	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0046018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	356	633	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953258	81953258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	150	285	0	ENST00000359376.3:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000359376	NM_002661.3	742	Cgc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604704	48604704	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	214	354	0	ENST00000342988.3:c.1526G>A	p.Trp509Ter	p.W509*	ENST00000342988	NM_005359.5	509	tGg/tAg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28610073	28610073	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0046018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	274	400	0	ENST00000241453.7:c.1417A>G	p.Asn473Asp	p.N473D	ENST00000241453	NM_004119.2	473	Aac/Gac																																																																														
ATM	472	MSKCC	GRCh37	11	108143437	108143455	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTTTCCCGTAGGCTGATC	CTTTTCCCGTAGGCTGATC	-			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	94	346	0	ENST00000278616.4:c.3154-9_3163del		p.X1052_splice	ENST00000278616	NM_000051.3	1052																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	98	340	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865345	57865345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	262	832	0	ENST00000228682.2:c.2822C>A	p.Ala941Asp	p.A941D	ENST00000228682	NM_005269.2	941	gCt/gAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351648	89351648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	112	727	0	ENST00000301030.4:c.1302G>T	p.Leu434Phe	p.L434F	ENST00000301030	NM_001256183.1	434	ttG/ttT																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435927	56435927	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	130	550	0	ENST00000407977.2:c.1210C>G	p.Arg404Gly	p.R404G	ENST00000407977		404	Cgc/Ggc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	139	695	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597429	10597430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAGGTGTCTGTATCTGGGTCGTAA			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	186	890	0	ENST00000171111.5:c.1749_1773dup	p.Ser592LeufsTer35	p.S592Lfs*35	ENST00000171111	NM_203500.1	591	-/TTACGACCCAGATACAGACACCTGG																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212652869	212652869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	70	319	1	ENST00000342788.4:c.437G>T	p.Gly146Val	p.G146V	ENST00000342788	NM_005235.2	146	gGa/gTa																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683466	182683466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	134	441	0	ENST00000292782.4:c.79G>T	p.Val27Leu	p.V27L	ENST00000292782	NM_020640.2	27	Gta/Tta																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372137	55372137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	97	315	0	ENST00000297316.4:c.827C>A	p.Pro276Gln	p.P276Q	ENST00000297316	NM_022454.3	276	cCa/cAa																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650325	48650325	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184815507		P-0046019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	226	415	0	ENST00000376670.3:c.295G>A	p.Gly99Ser	p.G99S	ENST00000376670	NM_002049.3	99	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	222	599	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SESN3	143686	MSKCC	GRCh37	11	94910901	94910901	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	86	366	0	ENST00000536441.1:c.1229A>G	p.His410Arg	p.H410R	ENST00000536441	NM_144665.3	410	cAc/cGc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224519	53224519	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	165	792	0	ENST00000375401.3:c.3194T>G	p.Leu1065Arg	p.L1065R	ENST00000375401	NM_004187.3	1065	cTg/cGg																																																																														
BTK	695	MSKCC	GRCh37	X	100608872	100608872	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	144	416	0	ENST00000308731.7:c.1736A>T	p.Asp579Val	p.D579V	ENST00000308731	NM_000061.2	579	gAc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	106	677	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
CASP8	841	MSKCC	GRCh37	2	202149922	202149922	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	123	612	0	ENST00000358485.4:c.1363G>T	p.Glu455Ter	p.E455*	ENST00000358485	NM_001080125.1	455	Gag/Tag																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735519	204735519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	52	407	0	ENST00000302823.3:c.320C>A	p.Ser107Tyr	p.S107Y	ENST00000302823	NM_005214.4	107	tCc/tAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827903	40827904	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0046021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	34	475	0	ENST00000373198.4:c.2524_2525delinsTT	p.Ser842Phe	p.S842F	ENST00000373198	NM_133170.3	842	AGt/TTt																																																																														
APC	324	MSKCC	GRCh37	5	112174410	112174410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	33	237	0	ENST00000257430.4:c.3119G>A	p.Arg1040Lys	p.R1040K	ENST00000257430	NM_000038.5	1040	aGg/aAg																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158553	26158553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	59	569	0	ENST00000289316.2:c.156C>A	p.Asp52Glu	p.D52E	ENST00000289316	NM_138720.2	52	gaC/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	13	369	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713789	30713789	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	35	616	0	ENST00000359013.4:c.1189A>T	p.Lys397Ter	p.K397*	ENST00000359013	NM_001024847.2	397	Aag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039612	47039612	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0046023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	24	270	1	ENST00000329236.7:c.830A>T	p.Glu277Val	p.E277V	ENST00000329236	NM_001204466.1	277	gAg/gTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0046026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	102	288	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0046026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	84	269	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	160	643	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0046026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	74	297	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202801	128202801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	168	702	1	ENST00000341105.2:c.919C>T	p.Arg307Trp	p.R307W	ENST00000341105	NM_032638.4	307	Cgg/Tgg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732916	30732917	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAGATGGTGTGTGAGACGTTGACTGAGTGCTGGGACCACGACCCAGAGGCCCGTCTCACA			P-0046026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	16	259	0	ENST00000359013.4:c.1605_1665dup	p.Ala556ProfsTer5	p.A556Pfs*5	ENST00000359013	NM_001024847.2	535	atc/atCCAGATGGTGTGTGAGACGTTGACTGAGTGCTGGGACCACGACCCAGAGGCCCGTCTCACAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	95	435	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	681	1084	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	148	518	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870301	155870301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	156	655	0	ENST00000368323.3:c.538C>T	p.Arg180Trp	p.R180W	ENST00000368323	NM_006912.5	180	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175399	112175399	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	128	334	0	ENST00000257430.4:c.4111del	p.Ser1371ValfsTer44	p.S1371Vfs*44	ENST00000257430	NM_000038.5	1370	Aaa/aa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539727	187539727	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	70	470	0	ENST00000441802.2:c.8013C>G	p.Phe2671Leu	p.F2671L	ENST00000441802	NM_005245.3	2671	ttC/ttG																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412643	139412643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	300	1276	0	ENST00000277541.6:c.1201C>T	p.Pro401Ser	p.P401S	ENST00000277541	NM_017617.3	401	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	243	674	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0046028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	77	347	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	84	652	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112173995	112173995	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	48	365	0	ENST00000257430.4:c.2704G>T	p.Glu902Ter	p.E902*	ENST00000257430	NM_000038.5	902	Gaa/Taa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	278	430	4	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653782	89653782	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0046028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	104	325	0	ENST00000371953.3:c.80A>C	p.Tyr27Ser	p.Y27S	ENST00000371953	NM_000314.4	27	tAt/tCt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112379	115112386	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTCCTC	CGCTCCTC	-			P-0046033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	40	308	0	ENST00000257566.3:c.1354_1361del	p.Glu452GlnfsTer237	p.E452Qfs*237	ENST00000257566	NM_016569.3	452	GAGGAGCGc/c																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0046034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	150	321	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	71	300	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	66	216	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434070	121434070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	159	427	1	ENST00000257555.6:c.961C>T	p.Arg321Cys	p.R321C	ENST00000257555		321	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	52	330	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	101	295	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	164	654	1	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	68	301	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	31	263	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522601	176522601	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	114	659	0	ENST00000292408.4:c.1703delC	p.Pro568GlnfsTer53	p.P568Qfs*53	ENST00000292408	NM_213647.1	566	cgC/cg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638456	176638456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	157	523	1	ENST00000439151.2:c.3056G>A	p.Arg1019His	p.R1019H	ENST00000439151	NM_022455.4	1019	cGc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298579	11298579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	162	474	0	ENST00000361445.4:c.1882C>T	p.Arg628Cys	p.R628C	ENST00000361445	NM_004958.3	628	Cgc/Tgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922048	39922048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	226	326	1	ENST00000378444.4:c.4124G>A	p.Arg1375Gln	p.R1375Q	ENST00000378444	NM_001123385.1	1375	cGg/cAg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	111	309	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	278	526	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																																																														
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	90	223	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713345	30713345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	153	336	0	ENST00000359013.4:c.745C>T	p.Arg249Cys	p.R249C	ENST00000359013	NM_001024847.2	249	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214696	5214696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	219	620	2	ENST00000357368.4:c.4370G>A	p.Cys1457Tyr	p.C1457Y	ENST00000357368	NM_002850.3	1457	tGt/tAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133236017	133236017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	155	480	0	ENST00000320574.5:c.3139G>A	p.Gly1047Arg	p.G1047R	ENST00000320574	NM_006231.2	1047	Ggg/Agg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023290	27023290	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	59	80	0	ENST00000324856.7:c.400del	p.Ala134ArgfsTer98	p.A134Rfs*98	ENST00000324856	NM_006015.4	132	gtG/gt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	72	379	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210697	36210697	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	181	538	0	ENST00000222270.7:c.448C>T	p.Arg150Ter	p.R150*	ENST00000222270	NM_014727.1	150	Cga/Tga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355347	15355347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	137	300	0	ENST00000263377.2:c.2276C>T	p.Pro759Leu	p.P759L	ENST00000263377	NM_058243.2	759	cCg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	236	670	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	139	507	3	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
MGA	23269	MSKCC	GRCh37	15	42042041	42042041	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	72	352	0	ENST00000219905.7:c.6240delA	p.Val2081TrpfsTer21	p.V2081Wfs*21	ENST00000219905	NM_001164273.1	2079	gAa/ga																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463271	25463271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	182	427	1	ENST00000264709.3:c.2222C>T	p.Ala741Val	p.A741V	ENST00000264709	NM_175629.2	741	gCg/gTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42041312	42041312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	108	362	0	ENST00000219905.7:c.5507C>A	p.Ser1836Tyr	p.S1836Y	ENST00000219905	NM_001164273.1	1836	tCt/tAt																																																																														
RHOA	387	MSKCC	GRCh37	3	49399928	49399928	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	138	384	0	ENST00000418115.1:c.408+1G>A		p.X136_splice	ENST00000418115	NM_001664.2	136																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138198252	138198252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	52	201	0	ENST00000237289.4:c.845G>T	p.Arg282Ile	p.R282I	ENST00000237289	NM_001270507.1	282	aGa/aTa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65301104	65301104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	100	206	0	ENST00000342505.4:c.3344C>T	p.Pro1115Leu	p.P1115L	ENST00000342505	NM_002227.2	1115	cCg/cTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88727455	88727455	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	121	423	1	ENST00000360948.2:c.323+1G>A		p.X108_splice	ENST00000360948	NM_001012338.2	108																																																																															
NUP93	9688	MSKCC	GRCh37	16	56782308	56782308	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34670294		P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	81	403	0	ENST00000308159.5:c.149G>A	p.Arg50His	p.R50H	ENST00000308159	NM_014669.4	50	cGc/cAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89383348	89383348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	180	517	0	ENST00000301030.4:c.80G>T	p.Gly27Val	p.G27V	ENST00000301030	NM_001256183.1	27	gGg/gTg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46275980	46275980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	102	383	0	ENST00000371998.3:c.3416T>C	p.Met1139Thr	p.M1139T	ENST00000371998		1139	aTg/aCg																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288162	21288162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	119	337	0	ENST00000354336.3:c.407G>T	p.Gly136Val	p.G136V	ENST00000354336	NM_005207.3	136	gGg/gTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31448657	31448657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	65	344	0	ENST00000344624.3:c.2879C>T	p.Ser960Leu	p.S960L	ENST00000344624		960	tCg/tTg																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158453	26158453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	230	567	0	ENST00000289316.2:c.56T>C	p.Val19Ala	p.V19A	ENST00000289316	NM_138720.2	19	gTg/gCg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324681	31324681	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	343	584	0	ENST00000412585.2:c.127del	p.Glu43SerfsTer16	p.E43Sfs*16	ENST00000412585	NM_005514.6	43	Gag/ag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152382229	152382229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	65	309	0	ENST00000206249.3:c.1339T>C	p.Cys447Arg	p.C447R	ENST00000206249	NM_000125.3	447	Tgc/Cgc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240002	53240002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	160	319	0	ENST00000375401.3:c.1439C>A	p.Pro480Gln	p.P480Q	ENST00000375401	NM_004187.3	480	cCg/cAg																																																																														
AR	367	MSKCC	GRCh37	X	66941758	66941758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	129	237	1	ENST00000374690.3:c.2407del	p.Gln803ArgfsTer6	p.Q803Rfs*6	ENST00000374690	NM_000044.3	801	aCc/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	103	376	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	126	540	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023678	27023678	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	47	276	0	ENST00000324856.7:c.784T>A	p.Ser262Thr	p.S262T	ENST00000324856	NM_006015.4	262	Tcg/Acg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001439	29001439	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	25	228	0	ENST00000282397.4:c.1293C>A	p.Tyr431Ter	p.Y431*	ENST00000282397	NM_002019.4	431	taC/taA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197741	66197741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	45	360	0	ENST00000273854.3:c.2958C>A	p.Phe986Leu	p.F986L	ENST00000273854	NM_004439.5	986	ttC/ttA																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31521236	31521236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	169	368	0	ENST00000344624.3:c.941C>T	p.Ser314Phe	p.S314F	ENST00000344624		314	tCt/tTt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31521282	31521282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	209	457	0	ENST00000344624.3:c.895A>G	p.Arg299Gly	p.R299G	ENST00000344624		299	Aga/Gga																																																																														
HGF	3082	MSKCC	GRCh37	7	81339475	81339475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	31	358	0	ENST00000222390.5:c.1529G>T	p.Ser510Ile	p.S510I	ENST00000222390	NM_000601.4	510	aGt/aTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	10	294	0				ENST00000310581	NM_198253.2																																																																																
RET	5979	MSKCC	GRCh37	10	43604479	43604479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	40	746	0	ENST00000355710.3:c.1064G>T	p.Arg355Met	p.R355M	ENST00000355710	NM_020975.4	355	aGg/aTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602840	10602840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	56	1176	0	ENST00000171111.5:c.738C>G	p.Phe246Leu	p.F246L	ENST00000171111	NM_203500.1	246	ttC/ttG																																																																														
AR	367	MSKCC	GRCh37	X	66765955	66765955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	55	1050	2	ENST00000374690.3:c.967G>A	p.Glu323Lys	p.E323K	ENST00000374690	NM_000044.3	323	Gag/Aag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683824	117683824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	66	512	0	ENST00000368508.3:c.3323C>T	p.Pro1108Leu	p.P1108L	ENST00000368508	NM_002944.2	1108	cCc/cTc																																																																														
PARP1	142	MSKCC	GRCh37	1	226567716	226567716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	32	738	0	ENST00000366794.5:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000366794	NM_001618.3	484	Gag/Aag																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366772	40366772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	23	607	1	ENST00000397332.2:c.425G>T	p.Arg142Leu	p.R142L	ENST00000397332	NM_001033082.2	142	cGg/cTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138106	64138106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	48	1019	0	ENST00000334205.4:c.2029G>T	p.Gly677Cys	p.G677C	ENST00000334205	NM_003942.2	677	Ggc/Tgc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133930	41133931	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	25	557	1	ENST00000379561.5:c.1697_1698delinsCT	p.Leu566Pro	p.L566P	ENST00000379561	NM_002015.3	566	cTG/cCT																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30105543	30105543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	88	689	0	ENST00000331968.5:c.1143G>T	p.Glu381Asp	p.E381D	ENST00000331968	NM_002742.2	381	gaG/gaT																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554362	81554362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	25	322	1	ENST00000298171.2:c.382C>A	p.Leu128Ile	p.L128I	ENST00000298171	NM_000369.2	128	Cta/Ata																																																																														
DICER1	23405	MSKCC	GRCh37	14	95578545	95578545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	19	304	0	ENST00000343455.3:c.2080G>T	p.Val694Leu	p.V694L	ENST00000343455	NM_177438.2	694	Gta/Tta																																																																														
BLM	641	MSKCC	GRCh37	15	91306374	91306374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	26	328	1	ENST00000355112.3:c.2061C>G	p.Ile687Met	p.I687M	ENST00000355112	NM_000057.2	687	atC/atG																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639671	3639671	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	60	1117	0	ENST00000294008.3:c.3968C>G	p.Ser1323Ter	p.S1323*	ENST00000294008	NM_032444.2	1323	tCa/tGa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647443	3647444	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	33	985	0	ENST00000294008.3:c.1619_1620delinsCT	p.Trp540Ser	p.W540S	ENST00000294008	NM_032444.2	540	tGG/tCT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577157	+	splice_acceptor_variant	Splice_Site	DNP	CT	CT	AA			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	29	591	1	ENST00000269305.4:c.783-2_783-1delinsTT		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7980455	7980455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	33	867	2	ENST00000319144.4:c.1128G>T	p.Trp376Cys	p.W376C	ENST00000319144	NM_001139.2	376	tgG/tgT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145602	11145602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	46	845	0	ENST00000344626.4:c.3964G>A	p.Asp1322Asn	p.D1322N	ENST00000344626	NM_003072.3	1322	Gac/Aac																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349602	15349602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	44	1199	0	ENST00000263377.2:c.3972G>T	p.Gln1324His	p.Q1324H	ENST00000263377	NM_058243.2	1324	caG/caT																																																																														
BARD1	580	MSKCC	GRCh37	2	215645753	215645753	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	35	513	0	ENST00000260947.4:c.845T>A	p.Leu282Ter	p.L282*	ENST00000260947	NM_000465.2	282	tTg/tAg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202824	128202824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	47	918	0	ENST00000341105.2:c.896G>T	p.Gly299Val	p.G299V	ENST00000341105	NM_032638.4	299	gGg/gTg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138376575	138376575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	39	567	0	ENST00000289153.2:c.2899G>T	p.Val967Phe	p.V967F	ENST00000289153	NM_006219.2	967	Gtc/Ttc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970923	79970923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	27	556	0	ENST00000265081.6:c.1149G>T	p.Lys383Asn	p.K383N	ENST00000265081	NM_002439.4	383	aaG/aaT																																																																														
HGF	3082	MSKCC	GRCh37	7	81372695	81372695	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	30	349	0	ENST00000222390.5:c.839G>T	p.Trp280Leu	p.W280L	ENST00000222390	NM_000601.4	280	tGg/tTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128843278	128843278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	41	1101	2	ENST00000249373.3:c.385G>T	p.Val129Leu	p.V129L	ENST00000249373	NM_005631.4	129	Gta/Tta																																																																														
PREX2	80243	MSKCC	GRCh37	8	69009386	69009386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	28	571	0	ENST00000288368.4:c.2503G>A	p.Val835Met	p.V835M	ENST00000288368	NM_024870.2	835	Gtg/Atg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923442	36923442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	36	915	0	ENST00000358127.4:c.820C>A	p.Leu274Met	p.L274M	ENST00000358127	NM_001280556.1	274	Ctg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0046050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	186	854	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	232	495	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	128	882	1	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115416	115115416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	157	659	0	ENST00000257566.3:c.910C>T	p.Arg304Trp	p.R304W	ENST00000257566	NM_016569.3	304	Cgg/Tgg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	442718	442718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	258	542	0	ENST00000399788.2:c.1588C>G	p.Pro530Ala	p.P530A	ENST00000399788	NM_001042603.1	530	Cct/Gct																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832885	3832885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	95	456	0	ENST00000262367.5:c.1373G>C	p.Gly458Ala	p.G458A	ENST00000262367	NM_004380.2	458	gGt/gCt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	308	451	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	319	528	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PAK7	0	MSKCC	GRCh37	20	9547022	9547022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	125	303	0	ENST00000353224.5:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000353224	NM_177990.2	334	Gat/Aat																																																																														
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	C			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	302	631	2	ENST00000558401.1:c.1A>C	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Ctg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661726	227661726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	205	812	0	ENST00000305123.5:c.1729G>A	p.Val577Met	p.V577M	ENST00000305123	NM_005544.2	577	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	403	405	2				ENST00000310581	NM_198253.2																																																																																
EZH1	2145	MSKCC	GRCh37	17	40855800	40855800	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	330	550	0	ENST00000428826.2:c.2056C>T	p.Arg686Ter	p.R686*	ENST00000428826		686	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211459	46211469	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGTCAAAGT	TGCGTCAAAGT	-			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	75	155	0	ENST00000334344.6:c.426_436del	p.Arg143TrpfsTer7	p.R143Wfs*7	ENST00000334344	NM_152641.2	142	cTGCGTCAAAGT/c																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56494880	56494881	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	390	625	1	ENST00000267101.3:c.3237_3238delinsTT	p.Arg1080Cys	p.R1080C	ENST00000267101	NM_001982.3	1079	ccCCgt/ccTTgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133219497	133219497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	228	907	3	ENST00000320574.5:c.4637T>C	p.Leu1546Pro	p.L1546P	ENST00000320574	NM_006231.2	1546	cTg/cCg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43720294	43720295	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	306	611	0	ENST00000382044.4:c.3747_3748delinsTA	p.Glu1250Lys	p.E1250K	ENST00000382044	NM_001141980.1	1249	cgGGaa/cgTAaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575077	48575077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	187	328	0	ENST00000342988.3:c.271C>T	p.Pro91Ser	p.P91S	ENST00000342988	NM_005359.5	91	Cct/Tct																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215520	5215520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	389	1031	2	ENST00000357368.4:c.4183C>T	p.Gln1395Ter	p.Q1395*	ENST00000357368	NM_002850.3	1395	Cag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221256	36221257	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	425	845	3	ENST00000222270.7:c.5090_5091delinsTT	p.Pro1697Leu	p.P1697L	ENST00000222270	NM_014727.1	1697	cCC/cTT																																																																														
REL	5966	MSKCC	GRCh37	2	61147221	61147221	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	182	313	1	ENST00000295025.8:c.899T>G	p.Phe300Cys	p.F300C	ENST00000295025	NM_002908.2	300	tTc/tGc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622254	117622254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	133	419	0	ENST00000368508.3:c.6616C>T	p.Pro2206Ser	p.P2206S	ENST00000368508	NM_002944.2	2206	Cct/Tct																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70982083	70982083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	335	764	0	ENST00000276594.2:c.13C>T	p.Arg5Trp	p.R5W	ENST00000276594	NM_024504.3	5	Cgg/Tgg																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032159	26032160	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0046051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	793	532	4	ENST00000244661.2:c.129_130delinsA	p.Pro44ArgfsTer19	p.P44Rfs*19	ENST00000244661	NM_003537.3	43	cgCCcg/cgAcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	261	715	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618952	37618953	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0046054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	124	544	0	ENST00000447079.4:c.629dupA	p.Tyr210Ter	p.Y210*	ENST00000447079	NM_015083.1	210	tac/tAac																																																																														
SRC	6714	MSKCC	GRCh37	20	36031638	36031638	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	164	1034	0	ENST00000358208.4:c.1467G>C	p.Glu489Asp	p.E489D	ENST00000358208		489	gaG/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	33	424	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579362	7579362	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	68	985	0	ENST00000269305.4:c.325T>G	p.Phe109Val	p.F109V	ENST00000269305	NM_001126112.2	109	Ttc/Gtc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603147	48603147	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0046062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	43	459	0	ENST00000342988.3:c.1447+1G>C		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	48	310	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0046064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	78	521	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31493382	31493382	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	35	246	0	ENST00000344624.3:c.1774A>C	p.Ile592Leu	p.I592L	ENST00000344624		592	Ata/Cta																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244269	5244269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	98	802	1	ENST00000357368.4:c.1213G>A	p.Val405Ile	p.V405I	ENST00000357368	NM_002850.3	405	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112175383	112175384	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	57	232	0	ENST00000257430.4:c.4094dup	p.Ala1366CysfsTer9	p.A1366Cfs*9	ENST00000257430	NM_000038.5	1364	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	263	716	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	47	201	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	250	356	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119762	70119763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	312	591	1	ENST00000245479.2:c.768dup	p.Arg257AlafsTer39	p.R257Afs*39	ENST00000245479	NM_000346.3	255	gag/gaGg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	161	434	0	ENST00000342988.3:c.1088G>A	p.Cys363Tyr	p.C363Y	ENST00000342988	NM_005359.5	363	tGt/tAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710564	114710564	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	194	478	0	ENST00000543371.1:c.49G>T	p.Glu17Ter	p.E17*	ENST00000543371	NM_001198531.1	17	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415897	49415897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	32	512	0	ENST00000301067.7:c.16450G>A	p.Glu5484Lys	p.E5484K	ENST00000301067	NM_003482.3	5484	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112174828	112174828	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0046066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	66	190	0	ENST00000257430.4:c.3537T>G	p.Tyr1179Ter	p.Y1179*	ENST00000257430	NM_000038.5	1179	taT/taG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	325	318	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652126	36652139	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGAGGCCGGGAT	GGCGAGGCCGGGAT	-			P-0046069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	383	1009	1	ENST00000244741.5:c.249_262del	p.Arg84ValfsTer40	p.R84Vfs*40	ENST00000244741	NM_000389.4	83	cGGCGAGGCCGGGAT/c																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88671966	88671966	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	14	182	0	ENST00000360948.2:c.1205-1G>A		p.X402_splice	ENST00000360948	NM_001012338.2	402																																																																															
CARD11	84433	MSKCC	GRCh37	7	2976739	2976739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	82	870	0	ENST00000396946.4:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000396946	NM_032415.4	425	Gag/Aag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18964115	18964115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	92	661	2	ENST00000262803.5:c.1112C>T	p.Ala371Val	p.A371V	ENST00000262803	NM_002911.3	371	gCg/gTg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627173	37627173	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	52	376	0	ENST00000447079.4:c.1088C>G	p.Ser363Ter	p.S363*	ENST00000447079	NM_015083.1	363	tCa/tGa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983122	201983123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	68	693	0	ENST00000359651.3:c.971_972insA	p.Met324IlefsTer147	p.M324Ifs*147	ENST00000359651		324	atg/atAg																																																																														
ATM	472	MSKCC	GRCh37	11	108163446	108163446	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	61	578	0	ENST00000278616.4:c.4537C>G	p.Leu1513Val	p.L1513V	ENST00000278616	NM_000051.3	1513	Cta/Gta																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843609	3843610	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0046069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	44	518	0	ENST00000262367.5:c.993_994del	p.Val332GlyfsTer17	p.V332Gfs*17	ENST00000262367	NM_004380.2	331	tcAGtg/tctg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99152591	99152591	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0046069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	41	389	0	ENST00000074304.5:c.388-1G>C		p.X130_splice	ENST00000074304	NM_001134224.1	130																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967238	134967238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	78	732	1	ENST00000398015.3:c.2577C>A	p.Asp859Glu	p.D859E	ENST00000398015	NM_004441.4	859	gaC/gaA																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748123	41748123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	17	229	1	ENST00000226382.2:c.646G>A	p.Gly216Ser	p.G216S	ENST00000226382	NM_003924.3	216	Ggc/Agc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554936	106554936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	33	466	2	ENST00000369096.4:c.2053C>T	p.Arg685Trp	p.R685W	ENST00000369096	NM_001198.3	685	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	65	542	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	140	574	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5265175	5265175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147257283		P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	152	983	0	ENST00000357368.4:c.412G>A	p.Asp138Asn	p.D138N	ENST00000357368	NM_002850.3	138	Gac/Aac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409974	139409974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	194	1176	0	ENST00000277541.6:c.1864G>A	p.Asp622Asn	p.D622N	ENST00000277541	NM_017617.3	622	Gac/Aac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432030	49432030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	225	846	1	ENST00000301067.7:c.9109delC	p.His3037ThrfsTer34	p.H3037Tfs*34	ENST00000301067	NM_003482.3	3037	Cac/ac																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022738	12022738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	115	549	3	ENST00000396373.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000396373	NM_001987.4	282	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099939	27099940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGAC			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	127	824	0	ENST00000324856.7:c.3819_3823dup	p.Pro1275ArgfsTer16	p.P1275Rfs*16	ENST00000324856	NM_006015.4	1273	atg/atGGGACg																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363074	40363074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	105	488	0	ENST00000397332.2:c.1155G>C	p.Gln385His	p.Q385H	ENST00000397332	NM_001033082.2	385	caG/caC																																																																														
ATM	472	MSKCC	GRCh37	11	108224591	108224591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	78	295	0	ENST00000278616.4:c.8770G>A	p.Glu2924Lys	p.E2924K	ENST00000278616	NM_000051.3	2924	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434269	49434269	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	171	1037	0	ENST00000301067.7:c.7284del	p.Pro2429LeufsTer56	p.P2429Lfs*56	ENST00000301067	NM_003482.3	2428	cgG/cg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569978	95569978	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	128	395	0	ENST00000343455.3:c.3755C>G	p.Ser1252Ter	p.S1252*	ENST00000343455	NM_177438.2	1252	tCa/tGa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39644795	39644795	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	35	205	0	ENST00000262039.4:c.2523+1G>A		p.X841_splice	ENST00000262039	NM_002647.2	841																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313373	30313373	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	120	597	1	ENST00000262643.3:c.973G>T	p.Glu325Ter	p.E325*	ENST00000262643	NM_001238.2	325	Gag/Tag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225400309	225400309	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	40	260	0	ENST00000264414.4:c.314T>G	p.Leu105Arg	p.L105R	ENST00000264414	NM_003590.4	105	cTa/cGa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374837	149374837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	116	370	0	ENST00000360632.3:c.257G>T	p.Arg86Leu	p.R86L	ENST00000360632	NM_015472.4	86	cGc/cTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253746	153253746	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	48	309	0	ENST00000281708.4:c.985+2T>A		p.X329_splice	ENST00000281708	NM_033632.3	329																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197082	26197082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	115	495	0	ENST00000356476.2:c.397G>A	p.Gly133Arg	p.G133R	ENST00000356476		133	Ggg/Agg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151868428	151868428	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	41	429	0	ENST00000262189.6:c.9375-1G>A		p.X3125_splice	ENST00000262189	NM_170606.2	3125																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153271233	153271233	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	CAA			P-0046070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	36	236	0	ENST00000281708.4:c.545delinsTTG	p.Ser182PhefsTer58	p.S182Ffs*58	ENST00000281708	NM_033632.3	182	tCt/tTTGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	93	360	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	93	617	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600369	10600369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	64	814	1	ENST00000171111.5:c.1486G>T	p.Glu496Ter	p.E496*	ENST00000171111	NM_203500.1	496	Gag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	42	299	0	ENST00000371953.3:c.487A>T	p.Lys163Ter	p.K163*	ENST00000371953	NM_000314.4	163	Aaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374583	118374583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	38	308	1	ENST00000534358.1:c.7976G>A	p.Arg2659Gln	p.R2659Q	ENST00000534358	NM_005933.3	2659	cGa/cAa																																																																														
MITF	4286	MSKCC	GRCh37	3	69928307	69928307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	41	429	0	ENST00000352241.4:c.127G>T	p.Ala43Ser	p.A43S	ENST00000352241	NM_198159.2	43	Gcc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965654	93965654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	42	356	0	ENST00000369303.4:c.2274C>A	p.Asp758Glu	p.D758E	ENST00000369303	NM_004440.3	758	gaC/gaA																																																																														
SMO	6608	MSKCC	GRCh37	7	128850361	128850361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	52	597	0	ENST00000249373.3:c.1624C>A	p.Leu542Met	p.L542M	ENST00000249373	NM_005631.4	542	Ctg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0046076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	131	692	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	126	412	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																														
MED12	9968	MSKCC	GRCh37	X	70345240	70345240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	157	708	1	ENST00000374080.3:c.2266G>A	p.Val756Ile	p.V756I	ENST00000374080		756	Gta/Ata																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356421	66356421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	114	342	0	ENST00000273854.3:c.1076C>T	p.Ser359Phe	p.S359F	ENST00000273854	NM_004439.5	359	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653827	89653848	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAAGGCGTATACAGGAACAA	TTGAAGGCGTATACAGGAACAA	-			P-0046076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	87	388	0	ENST00000371953.3:c.126_147del	p.Glu43LeufsTer4	p.E43Lfs*4	ENST00000371953	NM_000314.4	42	cTTGAAGGCGTATACAGGAACAAt/ct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249115	55249115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	219	897	1	ENST00000275493.2:c.2413C>T	p.His805Tyr	p.H805Y	ENST00000275493	NM_005228.3	805	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	512	715	1	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039339	49039339	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	284	619	2	ENST00000267163.4:c.2326-2A>T		p.X776_splice	ENST00000267163	NM_000321.2	776																																																																															
TET1	80312	MSKCC	GRCh37	10	70360757	70360757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	211	233	0	ENST00000373644.4:c.1934G>A	p.Arg645Lys	p.R645K	ENST00000373644	NM_030625.2	645	aGg/aAg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115280667	115280667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	246	563	0	ENST00000438362.2:c.364G>T	p.Asp122Tyr	p.D122Y	ENST00000438362	NM_001242891.1	122	Gac/Tac																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115268967	115268967	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	206	514	0	ENST00000438362.2:c.1643A>T	p.Gln548Leu	p.Q548L	ENST00000438362	NM_001242891.1	548	cAg/cTg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117426	4117426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	239	930	1	ENST00000262948.5:c.294G>T	p.Met98Ile	p.M98I	ENST00000262948	NM_030662.3	98	atG/atT																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881563	111881563	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	282	703	0	ENST00000393256.3:c.241A>T	p.Ile81Phe	p.I81F	ENST00000393256	NM_006538.4	81	Atc/Ttc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46255796	46255796	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	220	485	0	ENST00000371998.3:c.408T>G	p.Phe136Leu	p.F136L	ENST00000371998		136	ttT/ttG																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374763	149374763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	214	618	2	ENST00000360632.3:c.331G>T	p.Ala111Ser	p.A111S	ENST00000360632	NM_015472.4	111	Gcg/Tcg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295243	1295243	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	137	378	0				ENST00000310581	NM_198253.2																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106513299	106513299	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	118	327	0	ENST00000359195.3:c.2203del	p.Gln735LysfsTer4	p.Q735Kfs*4	ENST00000359195	NM_002649.2	735	Caa/aa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931822	68931822	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	153	534	0	ENST00000288368.4:c.252T>A	p.His84Gln	p.H84Q	ENST00000288368	NM_024870.2	84	caT/caA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046388	69046388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	201	605	0	ENST00000288368.4:c.3861C>A	p.Asn1287Lys	p.N1287K	ENST00000288368	NM_024870.2	1287	aaC/aaA																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908765	101908765	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	125	270	0	ENST00000374994.4:c.1131-2A>G		p.X377_splice	ENST00000374994	NM_004612.2	377																																																																															
BCOR	54880	MSKCC	GRCh37	X	39937135	39937135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	243	1052	1	ENST00000378444.4:c.48C>A	p.Asn16Lys	p.N16K	ENST00000378444	NM_001123385.1	16	aaC/aaA																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99162467	99162467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	51	514	0	ENST00000074304.5:c.985A>G	p.Lys329Glu	p.K329E	ENST00000074304	NM_001134224.1	329	Aaa/Gaa																																																																														
STK11	6794	MSKCC	GRCh37	19	1207119	1207132	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGACGCTGTGCA	GGAGACGCTGTGCA	-			P-0046080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	230	1061	0	ENST00000326873.7:c.211_224del	p.Thr71GlyfsTer87	p.T71Gfs*87	ENST00000326873	NM_000455.4	69	tcGGAGACGCTGTGCAgg/tcgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41548343	41548343	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	78	386	0	ENST00000263253.7:c.3131C>G	p.Ser1044Ter	p.S1044*	ENST00000263253	NM_001429.3	1044	tCa/tGa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628681	21628681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	84	638	2	ENST00000421138.2:c.1027G>A	p.Ala343Thr	p.A343T	ENST00000421138		343	Gct/Act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	82	514	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501194		P-0046081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	105	741	2	ENST00000269305.4:c.790del	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	264	Cta/ta																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604835	48604835	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0046081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	67	350	0	ENST00000342988.3:c.1657T>G	p.Ter553GlyextTer40	p.*553Gext*40	ENST00000342988	NM_005359.5	553	Tga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	33	515	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028757	47028757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1967	205	751	1	ENST00000329236.7:c.61C>T	p.Arg21Cys	p.R21C	ENST00000329236	NM_001204466.1	21	Cgc/Tgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180055948	180055948	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1554	129	850	0	ENST00000261937.6:c.1037C>G	p.Thr346Arg	p.T346R	ENST00000261937	NM_182925.4	346	aCg/aGg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593588	55593614	+	inframe_deletion	In_Frame_Del	DEL	ATGTATGAAGTACAGTGGAAGGTTGTT	ATGTATGAAGTACAGTGGAAGGTTGTT	-			P-0046084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	111	391	0	ENST00000288135.5:c.1654_1680del	p.Met552_Val560del	p.M552_V560del	ENST00000288135	NM_000222.2	552	ATGTATGAAGTACAGTGGAAGGTTGTT/-																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	570	791	0	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1350	142	640	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	601	499	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																														
MAX	4149	MSKCC	GRCh37	14	65569036	65569036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	79	573	0	ENST00000358664.4:c.22G>A	p.Glu8Lys	p.E8K	ENST00000358664	NM_002382.4	8	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1453	107	635	0	ENST00000267101.3:c.273G>T	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atT																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271395	26271395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	111	673	0	ENST00000305910.3:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000305910	NM_003534.2	73	cGa/cAa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032558	12032558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	167	407	0	ENST00000353533.5:c.994G>A	p.Glu332Lys	p.E332K	ENST00000353533	NM_003010.3	332	Gag/Aag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28908200	28908200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	60	494	0	ENST00000282397.4:c.2555C>A	p.Ser852Ter	p.S852*	ENST00000282397	NM_002019.4	852	tCa/tAa																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022572	12022572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	112	682	0	ENST00000396373.4:c.678G>C	p.Glu226Asp	p.E226D	ENST00000396373	NM_001987.4	226	gaG/gaC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428067	49428067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	318	652	0	ENST00000301067.7:c.10523G>A	p.Arg3508Gln	p.R3508Q	ENST00000301067	NM_003482.3	3508	cGg/cAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133202771	133202771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	288	680	0	ENST00000320574.5:c.6463G>A	p.Glu2155Lys	p.E2155K	ENST00000320574	NM_006231.2	2155	Gag/Aag																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100085	30100085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	501	658	0	ENST00000331968.5:c.1535G>A	p.Ser512Asn	p.S512N	ENST00000331968	NM_002742.2	512	aGc/aAc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020543	14020543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	66	408	0	ENST00000311895.7:c.514G>A	p.Asp172Asn	p.D172N	ENST00000311895	NM_005236.2	172	Gat/Aat																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627158	37627158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	68	370	0	ENST00000447079.4:c.1073G>A	p.Arg358Lys	p.R358K	ENST00000447079	NM_015083.1	358	aGa/aAa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78899247	78899247	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	331	597	0	ENST00000306801.3:c.2886G>C	p.Trp962Cys	p.W962C	ENST00000306801	NM_020761.2	962	tgG/tgC																																																																														
CARM1	10498	MSKCC	GRCh37	19	11022891	11022891	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	94	904	0	ENST00000327064.4:c.590T>C	p.Ile197Thr	p.I197T	ENST00000327064	NM_199141.1	197	aTc/aCc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46266471	46266471	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	42	389	0	ENST00000371998.3:c.2456C>G	p.Ser819Ter	p.S819*	ENST00000371998		819	tCa/tGa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278198	41278198	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	45	340	0	ENST00000349496.5:c.2074G>A	p.Glu692Lys	p.E692K	ENST00000349496	NM_001904.3	692	Gag/Aag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643360	52643360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	69	381	0	ENST00000394830.3:c.2536G>C	p.Glu846Gln	p.E846Q	ENST00000394830	NM_018313.4	846	Gaa/Caa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680487	30680487	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	101	610	0	ENST00000376406.3:c.1232C>G	p.Ser411Ter	p.S411*	ENST00000376406	NM_014641.2	411	tCa/tGa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046418	69046418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	93	546	0	ENST00000288368.4:c.3891G>C	p.Glu1297Asp	p.E1297D	ENST00000288368	NM_024870.2	1297	gaG/gaC																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072585	5072585	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	40	335	0	ENST00000381652.3:c.1735C>G	p.Leu579Val	p.L579V	ENST00000381652	NM_004972.3	579	Ctt/Gtt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024458	31024458	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TT			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	76	660	0	ENST00000375687.4:c.3943delinsTT	p.Gln1315LeufsTer14	p.Q1315Lfs*14	ENST00000375687	NM_015338.5	1315	Cag/TTag																																																																														
RARA	5914	MSKCC	GRCh37	17	38512314	38512319	+	missense_variant	Missense_Mutation	ONP	CTCATC	CTCATC	TTCATT			P-0046091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1278	303	746	0	ENST00000254066.5:c.1225_1230delinsTTCATT	p.Leu409Phe	p.L409F	ENST00000254066	NM_000964.3	409	CTCATC/TTCATT																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0046092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	373	765	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	46	416	0	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41566442	41566442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	46	341	0	ENST00000263253.7:c.4319C>T	p.Pro1440Leu	p.P1440L	ENST00000263253	NM_001429.3	1440	cCa/cTa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0046092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	725	996	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779192	135779192	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	81	369	0	ENST00000298552.3:c.2054C>G	p.Ser685Ter	p.S685*	ENST00000298552	NM_001162426.1	685	tCa/tGa																																																																														
NF1	4763	MSKCC	GRCh37	17	29661952	29661952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	29	382	1	ENST00000358273.4:c.5909G>A	p.Arg1970Lys	p.R1970K	ENST00000358273	NM_001042492.2	1970	aGa/aAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747098	40747098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	11	621	0	ENST00000373198.4:c.2984G>C	p.Trp995Ser	p.W995S	ENST00000373198	NM_133170.3	995	tGg/tCg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12647715	12647715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	73	252	0	ENST00000251849.4:c.665C>T	p.Ser222Phe	p.S222F	ENST00000251849	NM_002880.3	222	tCc/tTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1805482	1805482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	583	868	1	ENST00000260795.2:c.994G>C	p.Glu332Gln	p.E332Q	ENST00000260795		332	Gag/Cag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522640	67522640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	32	327	0	ENST00000274335.5:c.137A>G	p.Gln46Arg	p.Q46R	ENST00000274335		46	cAg/cGg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370865	55370865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	77	733	0	ENST00000297316.4:c.167C>T	p.Ala56Val	p.A56V	ENST00000297316	NM_022454.3	56	gCc/gTc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457279	67457284	+	missense_variant	Missense_Mutation	ONP	CATGTC	CATGTC	TATGTA			P-0046092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	181	866	1	ENST00000327367.4:c.253_258delinsTATGTA	p.His85Tyr	p.H85Y	ENST00000327367	NM_005902.3	85	CATGTC/TATGTA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	357	561	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	357	561	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	418	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	433	767	0	ENST00000269305.4:c.625A>T	p.Arg209Ter	p.R209*	ENST00000269305	NM_001126112.2	209	Aga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	357	561	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243906	41243906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	206	551	0	ENST00000357654.3:c.3642G>T	p.Glu1214Asp	p.E1214D	ENST00000357654	NM_007294.3	1214	gaG/gaT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259176	89259177	+	missense_variant	Missense_Mutation	DNP	AT	AT	TA			P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	35	356	0	ENST00000336596.2:c.320_321delinsTA	p.Asn107Ile	p.N107I	ENST00000336596	NM_005233.5	107	aAT/aTA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836325	151836326	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0046093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	170	495	0	ENST00000262189.6:c.14478_14479dup	p.Phe4827CysfsTer9	p.F4827Cfs*9	ENST00000262189	NM_170606.2	4827	ttc/tGTtc																																																																														
JUN	3725	MSKCC	GRCh37	1	59247878	59247878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	304	885	0	ENST00000371222.2:c.865G>A	p.Ala289Thr	p.A289T	ENST00000371222	NM_002228.3	289	Gct/Act																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202590	67202590	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	282	963	0	ENST00000312629.5:c.1399C>G	p.Pro467Ala	p.P467A	ENST00000312629	NM_003952.2	467	Ccc/Gcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	70	424	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557426	95557426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	96	418	0	ENST00000343455.3:c.5548C>T	p.Pro1850Ser	p.P1850S	ENST00000343455	NM_177438.2	1850	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	270	843	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	206	763	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119945	70119946	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	GTA			P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	158	517	0	ENST00000245479.2:c.948_949insTAG	p.Thr316_Gly317insTer	p.T316_G317ins*	ENST00000245479	NM_000346.3	316	acg/acGTAg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39618806	39618806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	43	234	0	ENST00000262039.4:c.2030C>T	p.Thr677Ile	p.T677I	ENST00000262039	NM_002647.2	677	aCa/aTa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228077	36228077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	278	883	0	ENST00000222270.7:c.7463A>G	p.Tyr2488Cys	p.Y2488C	ENST00000222270	NM_014727.1	2488	tAt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	147	523	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	85	327	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175783	112175786	+	frameshift_variant	Frame_Shift_Del	DEL	GATG	GATG	-			P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	67	317	0	ENST00000257430.4:c.4495_4498del	p.Gly1499PhefsTer7	p.G1499Ffs*7	ENST00000257430	NM_000038.5	1498	GATGga/ga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508164	106508164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	86	343	0	ENST00000359195.3:c.158G>A	p.Ser53Asn	p.S53N	ENST00000359195	NM_002649.2	53	aGc/aAc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372193	55372193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	168	457	0	ENST00000297316.4:c.883G>A	p.Val295Met	p.V295M	ENST00000297316	NM_022454.3	295	Gtg/Atg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412367	63412367	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	268	955	1	ENST00000330258.3:c.800C>A	p.Ser267Ter	p.S267*	ENST00000330258	NM_152424.3	267	tCa/tAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881329	37881329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	751	942	0	ENST00000269571.5:c.2521C>G	p.Leu841Val	p.L841V	ENST00000269571		841	Ctc/Gtc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	756	1056	0	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	302	367	1				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49433896	49433896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	478	1245	0	ENST00000301067.7:c.7657C>T	p.Gln2553Ter	p.Q2553*	ENST00000301067	NM_003482.3	2553	Cag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133257806	133257806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148269473		P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	262	589	1	ENST00000320574.5:c.122C>T	p.Thr41Met	p.T41M	ENST00000320574	NM_006231.2	41	aCg/aTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249511	153249511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	386	553	0	ENST00000281708.4:c.1267G>A	p.Gly423Arg	p.G423R	ENST00000281708	NM_033632.3	423	Gga/Aga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820903	3820903	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	756	895	1	ENST00000262367.5:c.2548C>T	p.Gln850Ter	p.Q850*	ENST00000262367	NM_004380.2	850	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108190691	108190691	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	230	364	0	ENST00000278616.4:c.6358G>T	p.Glu2120Ter	p.E2120*	ENST00000278616	NM_000051.3	2120	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711991	89711991	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	135	378	0	ENST00000371953.3:c.609T>G	p.Ile203Met	p.I203M	ENST00000371953	NM_000314.4	203	atT/atG																																																																														
DICER1	23405	MSKCC	GRCh37	14	95596442	95596442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	95	331	0	ENST00000343455.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000343455	NM_177438.2	176	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37871714	37871714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	309	901	0	ENST00000269571.5:c.1238C>T	p.Ser413Leu	p.S413L	ENST00000269571		413	tCa/tTa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872207	45872207	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	567	841	0	ENST00000391945.4:c.227C>G	p.Thr76Ser	p.T76S	ENST00000391945	NM_000400.3	76	aCt/aGt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47641538	47641538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	124	345	0	ENST00000233146.2:c.923G>C	p.Arg308Thr	p.R308T	ENST00000233146	NM_000251.2	308	aGa/aCa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48025783	48025783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	57	210	0	ENST00000234420.5:c.661G>A	p.Glu221Lys	p.E221K	ENST00000234420	NM_000179.2	221	Gaa/Aaa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321504	62321504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	371	1099	0	ENST00000508582.2:c.2278G>A	p.Asp760Asn	p.D760N	ENST00000508582		760	Gac/Aac																																																																														
TET2	54790	MSKCC	GRCh37	4	106156625	106156625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	167	455	0	ENST00000380013.4:c.1526C>T	p.Ser509Leu	p.S509L	ENST00000380013	NM_001127208.2	509	tCa/tTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637588	176637588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	201	526	0	ENST00000439151.2:c.2188C>G	p.Leu730Val	p.L730V	ENST00000439151	NM_022455.4	730	Ctc/Gtc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289340	33289340	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	502	451	0	ENST00000374542.5:c.212T>G	p.Leu71Arg	p.L71R	ENST00000374542	NM_001141970.1	71	cTt/cGt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509861	106509861	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	230	686	0	ENST00000359195.3:c.1855C>G	p.Gln619Glu	p.Q619E	ENST00000359195	NM_002649.2	619	Caa/Gaa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054709	5054709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	252	327	0	ENST00000381652.3:c.761A>G	p.Tyr254Cys	p.Y254C	ENST00000381652	NM_004972.3	254	tAt/tGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922734	44922734	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	178	255	0	ENST00000377967.4:c.1595C>G	p.Ser532Ter	p.S532*	ENST00000377967	NM_021140.2	532	tCa/tGa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205114	123205114	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	331	242	0	ENST00000218089.9:c.2474T>A	p.Leu825Ter	p.L825*	ENST00000218089	NM_001042749.1	825	tTg/tAg																																																																														
MYC	4609	MSKCC	GRCh37	8	128750639	128750639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	222	739	0	ENST00000377970.2:c.176C>T	p.Ala59Val	p.A59V	ENST00000377970	NM_002467.4	59	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0046098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	774	1099	1	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467829	66467829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	27	337	0	ENST00000273854.3:c.440G>T	p.Cys147Phe	p.C147F	ENST00000273854	NM_004439.5	147	tGt/tTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500923	8500923	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	55	494	0	ENST00000356435.5:c.1959T>A	p.Asp653Glu	p.D653E	ENST00000356435		653	gaT/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	134	396	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47600981	47600981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	98	330	1	ENST00000263735.4:c.219G>A	p.Met73Ile	p.M73I	ENST00000263735	NM_002354.2	73	atG/atA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845871	151845871	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	59	408	1	ENST00000262189.6:c.13141G>T	p.Glu4381Ter	p.E4381*	ENST00000262189	NM_170606.2	4381	Gaa/Taa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864399	57864399	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	122	514	0	ENST00000228682.2:c.1876T>A	p.Tyr626Asn	p.Y626N	ENST00000228682	NM_005269.2	626	Tat/Aat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248492	212248492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	55	310	0	ENST00000342788.4:c.3775C>G	p.Leu1259Val	p.L1259V	ENST00000342788	NM_005235.2	1259	Ctg/Gtg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713418	40713418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	151	468	0	ENST00000373198.4:c.4097C>T	p.Pro1366Leu	p.P1366L	ENST00000373198	NM_133170.3	1366	cCc/cTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637708	52637708	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	123	235	0	ENST00000394830.3:c.2608C>T	p.Gln870Ter	p.Q870*	ENST00000394830	NM_018313.4	870	Cag/Tag																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665118	138665118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	134	343	0	ENST00000330315.3:c.447G>A	p.Met149Ile	p.M149I	ENST00000330315	NM_023067.3	149	atG/atA																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374684	149374684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	135	464	0	ENST00000360632.3:c.410C>T	p.Thr137Ile	p.T137I	ENST00000360632	NM_015472.4	137	aCt/aTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420645	49420645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	286	386	0	ENST00000301067.7:c.15104G>A	p.Cys5035Tyr	p.C5035Y	ENST00000301067	NM_003482.3	5035	tGt/tAt																																																																														
MAX	4149	MSKCC	GRCh37	14	65543268	65543268	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs17852278		P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	184	263	0	ENST00000358664.4:c.409G>T	p.Gly137Cys	p.G137C	ENST00000358664	NM_002382.4	137	Ggc/Tgc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478113	99478113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	216	274	0	ENST00000268035.6:c.3017G>T	p.Gly1006Val	p.G1006V	ENST00000268035	NM_000875.3	1006	gGg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	342	275	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
AURKB	9212	MSKCC	GRCh37	17	8111110	8111110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	177	448	0	ENST00000585124.1:c.97C>A	p.Pro33Thr	p.P33T	ENST00000585124	NM_004217.3	33	Cct/Act																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004725	16004725	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	97	338	0	ENST00000268712.3:c.2529A>T	p.Glu843Asp	p.E843D	ENST00000268712	NM_006311.3	843	gaA/gaT																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068403	26068403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	98	203	0	ENST00000435504.4:c.87G>T	p.Met29Ile	p.M29I	ENST00000435504		29	atG/atT																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371721	225371721	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	45	205	0	ENST00000264414.4:c.884-1G>C		p.X295_splice	ENST00000264414	NM_003590.4	295																																																																															
PAK7	0	MSKCC	GRCh37	20	9560829	9560829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	197	250	0	ENST00000353224.5:c.953A>G	p.Tyr318Cys	p.Y318C	ENST00000353224	NM_177990.2	318	tAc/tGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41565575	41565575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	134	158	0	ENST00000263253.7:c.4241A>G	p.Tyr1414Cys	p.Y1414C	ENST00000263253	NM_001429.3	1414	tAt/tGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540539	187540540	+	stop_gained	Nonsense_Mutation	DNP	CG	CG	AC			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	118	230	1	ENST00000441802.2:c.7200_7201delinsGT	p.Ser2400_Glu2401delinsArgTer	p.S2400_E2401delinsR*	ENST00000441802	NM_005245.3	2400	agCGag/agGTag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31431749	31431749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	130	176	0	ENST00000344624.3:c.3079G>T	p.Gly1027Trp	p.G1027W	ENST00000344624		1027	Ggg/Tgg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871251	35871251	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	46	183	0	ENST00000303115.3:c.473A>T	p.Lys158Met	p.K158M	ENST00000303115	NM_002185.3	158	aAg/aTg																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839969	27839969	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	219	429	0	ENST00000328488.2:c.125A>T	p.Tyr42Phe	p.Y42F	ENST00000328488	NM_003533.2	42	tAc/tTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81358920	81358920	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	135	193	0	ENST00000222390.5:c.1040+1G>A		p.X347_splice	ENST00000222390	NM_000601.4	347																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	224	266	0	ENST00000304494.5:c.150+1G>T		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0046102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	224	266	0	ENST00000304494.5:c.150+1G>T		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	237	236	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099397	27099397	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	235	309	0	ENST00000324856.7:c.3634C>T	p.Gln1212Ter	p.Q1212*	ENST00000324856	NM_006015.4	1212	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	392	450	0	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692949	89692949	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	227	314	0	ENST00000371953.3:c.437del	p.Leu146Ter	p.L146*	ENST00000371953	NM_000314.4	145	Ttt/tt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45799086	45799086	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	330	533	1	ENST00000372115.3:c.305G>T	p.Arg102Leu	p.R102L	ENST00000372115	NM_001048171.1	102	cGg/cTg																																																																														
WT1	7490	MSKCC	GRCh37	11	32410704	32410704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	77	251	0	ENST00000332351.3:c.1454G>T	p.Arg485Leu	p.R485L	ENST00000332351	NM_024426.4	485	cGg/cTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231486	46231486	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	162	154	0	ENST00000334344.6:c.1326C>G	p.Ser442Arg	p.S442R	ENST00000334344	NM_152641.2	442	agC/agG																																																																														
B2M	567	MSKCC	GRCh37	15	45003750	45003759	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCTCCGTG	TCGCTCCGTG	-			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	209	372	0	ENST00000558401.1:c.6_15del	p.Arg3ProfsTer2	p.R3Pfs*2	ENST00000558401	NM_004048.2	2	tcTCGCTCCGTG/tc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25990544	25990544	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	112	281	0	ENST00000435504.4:c.683C>G	p.Ser228Ter	p.S228*	ENST00000435504		228	tCa/tGa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57466824	57466824	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	71	137	0	ENST00000371085.3:c.43G>C	p.Glu15Gln	p.E15Q	ENST00000371085	NM_000516.4	15	Gag/Cag																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435622	149435622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	239	428	0	ENST00000286301.3:c.2521T>C	p.Tyr841His	p.Y841H	ENST00000286301	NM_005211.3	841	Tat/Cat																																																																														
HGF	3082	MSKCC	GRCh37	7	81374409	81374409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	141	200	0	ENST00000222390.5:c.653G>T	p.Ser218Ile	p.S218I	ENST00000222390	NM_000601.4	218	aGt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	17	406	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	341	376	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29661964	29661964	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	217	226	0	ENST00000358273.4:c.5922del	p.Asp1976ThrfsTer3	p.D1976Tfs*3	ENST00000358273	NM_001042492.2	1974	aTt/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1293668	1293668	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	182	633	0	ENST00000310581.5:c.1333C>G	p.Pro445Ala	p.P445A	ENST00000310581	NM_198253.2	445	Ccc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	208	349	0	ENST00000269305.4:c.646G>C	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ctg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129671	11129671	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	287	385	0	ENST00000344626.4:c.2481del	p.Ser828ProfsTer3	p.S828Pfs*3	ENST00000344626	NM_003072.3	826	gCc/gc																																																																														
APC	324	MSKCC	GRCh37	5	112111390	112111390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	55	120	0	ENST00000257430.4:c.487C>T	p.Gln163Ter	p.Q163*	ENST00000257430	NM_000038.5	163	Cag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672767	30672767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	111	347	1	ENST00000376406.3:c.4193G>T	p.Arg1398Ile	p.R1398I	ENST00000376406	NM_014641.2	1398	aGa/aTa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111168	193111168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	162	108	0	ENST00000367435.3:c.701G>C	p.Arg234Pro	p.R234P	ENST00000367435	NM_024529.4	234	cGa/cCa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372403	118372403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	112	241	1	ENST00000534358.1:c.6336G>C	p.Glu2112Asp	p.E2112D	ENST00000534358	NM_005933.3	2112	gaG/gaC																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641506	18641506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	41	154	0	ENST00000266497.5:c.2505C>G	p.Ile835Met	p.I835M	ENST00000266497		835	atC/atG																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856026	111856026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	233	351	0	ENST00000341259.2:c.77G>T	p.Trp26Leu	p.W26L	ENST00000341259	NM_005475.2	26	tGg/tTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562804	95562804	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	59	180	0	ENST00000343455.3:c.4453A>C	p.Lys1485Gln	p.K1485Q	ENST00000343455	NM_177438.2	1485	Aaa/Caa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724623	43724623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	246	430	0	ENST00000382044.4:c.3444G>C	p.Leu1148Phe	p.L1148F	ENST00000382044	NM_001141980.1	1148	ttG/ttC																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43733751	43733751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	108	190	0	ENST00000382044.4:c.3071C>T	p.Ser1024Phe	p.S1024F	ENST00000382044	NM_001141980.1	1024	tCt/tTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831674	72831674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	216	356	0	ENST00000268489.5:c.4907G>A	p.Ser1636Asn	p.S1636N	ENST00000268489	NM_006885.3	1636	aGc/aAc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11999012	11999012	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	87	135	0	ENST00000353533.5:c.513+1G>T		p.X171_splice	ENST00000353533	NM_003010.3	171																																																																															
SPOP	8405	MSKCC	GRCh37	17	47679358	47679358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	181	225	0	ENST00000347630.2:c.849G>C	p.Glu283Asp	p.E283D	ENST00000347630	NM_001007230.1	283	gaG/gaC																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622538	158622538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	301	272	0	ENST00000263640.3:c.961A>G	p.Ile321Val	p.I321V	ENST00000263640	NM_001105.4	321	Ata/Gta																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119595335	119595335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	120	144	0	ENST00000316626.5:c.834G>T	p.Arg278Ser	p.R278S	ENST00000316626		278	agG/agT																																																																														
TP63	8626	MSKCC	GRCh37	3	189526299	189526299	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	91	284	0	ENST00000264731.3:c.563A>T	p.Lys188Met	p.K188M	ENST00000264731	NM_003722.4	188	aAg/aTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189582116	189582117	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	65	262	0	ENST00000264731.3:c.675_676delinsAA	p.Arg226Ser	p.R226S	ENST00000264731	NM_003722.4	225	atCCgc/atAAgc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980496	1980496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151213547		P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	215	530	0	ENST00000382891.5:c.3958C>T	p.Arg1320Trp	p.R1320W	ENST00000382891	NM_133335.3	1320	Cgg/Tgg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133583	55133583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	68	264	0	ENST00000257290.5:c.887C>A	p.Thr296Asn	p.T296N	ENST00000257290	NM_006206.4	296	aCc/aAc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131940638	131940638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	127	187	0	ENST00000265335.6:c.2665G>A	p.Glu889Lys	p.E889K	ENST00000265335		889	Gag/Aag																																																																														
IRF4	3662	MSKCC	GRCh37	6	397235	397235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	112	216	0	ENST00000380956.4:c.620G>T	p.Gly207Val	p.G207V	ENST00000380956	NM_001195286.1	207	gGc/gTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675492	30675492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	272	410	0	ENST00000376406.3:c.2864G>A	p.Ser955Asn	p.S955N	ENST00000376406	NM_014641.2	955	aGc/aAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181023	32181023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	296	455	0	ENST00000375023.3:c.2327G>T	p.Cys776Phe	p.C776F	ENST00000375023	NM_004557.3	776	tGc/tTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157222519	157222519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	287	289	0	ENST00000346085.5:c.1786C>G	p.Gln596Glu	p.Q596E	ENST00000346085	NM_020732.3	596	Cag/Gag																																																																														
PARK2	0	MSKCC	GRCh37	6	162864481	162864481	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	138	218	1	ENST00000366898.1:c.32A>T	p.His11Leu	p.H11L	ENST00000366898	NM_004562.2	11	cAt/cTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949733	151949733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	138	196	0	ENST00000262189.6:c.1367G>C	p.Cys456Ser	p.C456S	ENST00000262189	NM_170606.2	456	tGt/tCt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38315034	38315034	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	222	343	0	ENST00000425967.3:c.30G>C	p.Arg10Ser	p.R10S	ENST00000425967	NM_001174067.1	10	agG/agC																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70971032	70971032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	147	323	0	ENST00000276594.2:c.1229C>A	p.Thr410Asn	p.T410N	ENST00000276594	NM_024504.3	410	aCc/aAc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739643	145739643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1544	357	561	0	ENST00000428558.2:c.1808G>A	p.Cys603Tyr	p.C603Y	ENST00000428558	NM_004260.3	603	tGc/tAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039873	47039873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	314	480	0	ENST00000329236.7:c.982G>A	p.Ala328Thr	p.A328T	ENST00000329236	NM_001204466.1	328	Gcc/Acc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044531	47044531	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	208	448	0	ENST00000329236.7:c.1794C>G	p.Ile598Met	p.I598M	ENST00000329236	NM_001204466.1	598	atC/atG																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467828	50467828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	483	382	0	ENST00000331340.3:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000331340	NM_006060.4	355	Gcg/Acg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579317	7579317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0046110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	679	367	0	ENST00000269305.4:c.370T>C	p.Cys124Arg	p.C124R	ENST00000269305	NM_001126112.2	124	Tgc/Cgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101423	27101423	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	352	283	0	ENST00000324856.7:c.4706del	p.Pro1569HisfsTer43	p.P1569Hfs*43	ENST00000324856	NM_006015.4	1569	Cca/ca																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72241952	72241952	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0046110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	177	166	0	ENST00000357731.5:c.438T>A	p.Asn146Lys	p.N146K	ENST00000357731	NM_173808.2	146	aaT/aaA																																																																														
AKT3	10000	MSKCC	GRCh37	1	243858977	243858977	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	133	211	0	ENST00000263826.5:c.88A>T	p.Lys30Ter	p.K30*	ENST00000263826	NM_005465.4	30	Aag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302276	15302276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	1141	552	0	ENST00000263388.2:c.995G>T	p.Arg332Leu	p.R332L	ENST00000263388	NM_000435.2	332	cGc/cTc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47606137	47606137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	59	191	0	ENST00000263735.4:c.601C>A	p.Gln201Lys	p.Q201K	ENST00000263735	NM_002354.2	201	Caa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	93	188	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	143	462	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	30	119	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	140	559	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669510	88669510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	22	199	1	ENST00000360948.2:c.1388G>A	p.Gly463Glu	p.G463E	ENST00000360948	NM_001012338.2	463	gGa/gAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66242725	66242725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	13	138	0	ENST00000273854.3:c.1847G>A	p.Ser616Asn	p.S616N	ENST00000273854	NM_004439.5	616	aGc/aAc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614584	38614584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	51	258	1	ENST00000299084.4:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000299084	NM_152594.2	117	cGa/cAa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138561	11138561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	37	331	0	ENST00000344626.4:c.3317C>A	p.Thr1106Asn	p.T1106N	ENST00000344626	NM_003072.3	1106	aCc/aAc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26022295	26022295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	171	306	1	ENST00000435504.4:c.362G>A	p.Gly121Asp	p.G121D	ENST00000435504		121	gGc/gAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180049806	180049806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	108	417	0	ENST00000261937.6:c.1582G>A	p.Val528Met	p.V528M	ENST00000261937	NM_182925.4	528	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	175	324	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	121	673	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967794	18967794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	93	896	1	ENST00000262803.5:c.1933G>A	p.Glu645Lys	p.E645K	ENST00000262803	NM_002911.3	645	Gag/Aag																																																																														
ATR	545	MSKCC	GRCh37	3	142257436	142257436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	44	254	0	ENST00000350721.4:c.3613C>T	p.His1205Tyr	p.H1205Y	ENST00000350721	NM_001184.3	1205	Cat/Tat																																																																														
FANCC	2176	MSKCC	GRCh37	9	97864045	97864045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	115	506	0	ENST00000289081.3:c.1621C>T	p.Pro541Ser	p.P541S	ENST00000289081	NM_000136.2	541	Cct/Tct																																																																														
BCOR	54880	MSKCC	GRCh37	X	39935747	39935747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	52	205	0	ENST00000378444.4:c.125G>T	p.Arg42Ile	p.R42I	ENST00000378444	NM_001123385.1	42	aGa/aTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412975	63412975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	103	445	3	ENST00000330258.3:c.192G>T	p.Lys64Asn	p.K64N	ENST00000330258	NM_152424.3	64	aaG/aaT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0046151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	211	459	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	213	378	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207081	1207081	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	354	705	1	ENST00000326873.7:c.169G>T	p.Glu57Ter	p.E57*	ENST00000326873	NM_000455.4	57	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829323	72829323	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0046151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	278	483	0	ENST00000268489.5:c.7258A>C	p.Asn2420His	p.N2420H	ENST00000268489	NM_006885.3	2420	Aat/Cat																																																																														
APC	324	MSKCC	GRCh37	5	112175533	112175533	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	101	213	0	ENST00000257430.4:c.4243del	p.Ser1415ValfsTer4	p.S1415Vfs*4	ENST00000257430	NM_000038.5	1414	gtA/gt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	53	238	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0046153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	41	302	0	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097761	27097762	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0046153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	58	357	0	ENST00000324856.7:c.3351_3352del	p.Phe1118CysfsTer4	p.F1118Cfs*4	ENST00000324856	NM_006015.4	1117	aTC/a																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113304	209113304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	49	258	0	ENST00000345146.2:c.203A>G	p.Asn68Ser	p.N68S	ENST00000345146	NM_005896.2	68	aAt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	268	308	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912029	127912029	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	120	301	1	ENST00000373547.4:c.841G>T	p.Glu281Ter	p.E281*	ENST00000373547	NM_002721.4	281	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248528	212248528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	458	507	0	ENST00000342788.4:c.3739C>A	p.Leu1247Met	p.L1247M	ENST00000342788	NM_005235.2	1247	Ctg/Atg																																																																														
ALK	238	MSKCC	GRCh37	2	30143167	30143167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	486	804	1	ENST00000389048.3:c.359C>A	p.Ala120Asp	p.A120D	ENST00000389048	NM_004304.4	120	gCc/gAc																																																																														
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	245	289	0	ENST00000278616.4:c.6115G>T	p.Glu2039Ter	p.E2039*	ENST00000278616	NM_000051.3	2039	Gaa/Taa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561327	9561327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	72	375	0	ENST00000353224.5:c.455A>G	p.Tyr152Cys	p.Y152C	ENST00000353224	NM_177990.2	152	tAt/tGt																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589519	69589519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	71	127	0	ENST00000168712.1:c.334C>G	p.Arg112Gly	p.R112G	ENST00000168712	NM_002007.2	112	Cgc/Ggc																																																																														
RET	5979	MSKCC	GRCh37	10	43604578	43604578	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	172	805	2	ENST00000355710.3:c.1163T>A	p.Val388Asp	p.V388D	ENST00000355710	NM_020975.4	388	gTc/gAc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28896476	28896476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	120	295	0	ENST00000282397.4:c.2974G>C	p.Glu992Gln	p.E992Q	ENST00000282397	NM_002019.4	992	Gag/Cag																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647134	23647134	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	151	603	0	ENST00000261584.4:c.733del	p.Ala245ArgfsTer34	p.A245Rfs*34	ENST00000261584	NM_024675.3	245	Gcg/cg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56400683	56400683	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	70	248	0	ENST00000348428.3:c.1277T>A	p.Val426Asp	p.V426D	ENST00000348428	NM_006785.3	426	gTc/gAc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46603838	46603838	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	490	603	0	ENST00000263734.3:c.1195G>T	p.Glu399Ter	p.E399*	ENST00000263734	NM_001430.4	399	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0046160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	146	313	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	197	780	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
AR	367	MSKCC	GRCh37	X	66766441	66766441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	47	340	0	ENST00000374690.3:c.1453C>T	p.Arg485Trp	p.R485W	ENST00000374690	NM_000044.3	485	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214792	36214792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	177	770	0	ENST00000222270.7:c.3218G>A	p.Arg1073His	p.R1073H	ENST00000222270	NM_014727.1	1073	cGc/cAc																																																																														
STK40	83931	MSKCC	GRCh37	1	36824346	36824346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	67	541	0	ENST00000373129.3:c.190C>G	p.Gln64Glu	p.Q64E	ENST00000373129	NM_032017.1	64	Cag/Gag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367833	15367833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1233	190	894	0	ENST00000263377.2:c.1493G>A	p.Ser498Asn	p.S498N	ENST00000263377	NM_058243.2	498	aGt/aAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106197518	106197519	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0046160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	15	302	0	ENST00000380013.4:c.5851_5852delinsTT	p.Arg1951Leu	p.R1951L	ENST00000380013	NM_001127208.2	1951	CGg/TTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44896902	44896902	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0046163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	15	71	0	ENST00000377967.4:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000377967	NM_021140.2	208	Caa/Taa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144114	11144114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	99	828	0	ENST00000344626.4:c.3695G>A	p.Gly1232Asp	p.G1232D	ENST00000344626	NM_003072.3	1232	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0046163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	26	338	0				ENST00000310581	NM_198253.2																																																																																
ELF3	1999	MSKCC	GRCh37	1	201981819	201981820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	278	939	0	ENST00000359651.3:c.534dup	p.Tyr179LeufsTer17	p.Y179Lfs*17	ENST00000359651		177	agc/agCc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279586	18279586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	97	735	0	ENST00000222254.8:c.1859G>A	p.Arg620His	p.R620H	ENST00000222254	NM_005027.3	620	cGc/cAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41551066	41551067	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAATCCC			P-0046163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	81	567	0	ENST00000263253.7:c.3211_3217dup	p.Leu1073ArgfsTer18	p.L1073Rfs*18	ENST00000263253	NM_001429.3	1070	-/GAATCCC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55087035	55087035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	103	420	0	ENST00000275493.2:c.65G>T	p.Ser22Ile	p.S22I	ENST00000275493	NM_005228.3	22	aGt/aTt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781116	135781116	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0046163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	59	626	0	ENST00000298552.3:c.1849del	p.His617IlefsTer12	p.H617Ifs*12	ENST00000298552	NM_001162426.1	617	Cat/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	346	649	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0046165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	123	503	0	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251644	212251644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	85	457	0	ENST00000342788.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000342788	NM_005235.2	1139	Cgg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44833925	44833925	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	79	61	0	ENST00000377967.4:c.349C>T	p.Gln117Ter	p.Q117*	ENST00000377967	NM_021140.2	117	Cag/Tag																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978662	70978662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	512	516	0	ENST00000276594.2:c.991G>T	p.Ala331Ser	p.A331S	ENST00000276594	NM_024504.3	331	Gcc/Tcc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78727888	78727888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026158-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			363	68	709	2	ENST00000306801.3:c.733G>A	p.Ala245Thr	p.A245T	ENST00000306801	NM_020761.2	245	Gcc/Acc																																																																														
RET	5979	MSKCC	GRCh37	10	43595943	43595943	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026158-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			394	99	1046	0	ENST00000355710.3:c.110G>T	p.Trp37Leu	p.W37L	ENST00000355710	NM_020975.4	37	tGg/tTg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131976435	131976435	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026158-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			297	124	599	0	ENST00000265335.6:c.3690G>C	p.Leu1230Phe	p.L1230F	ENST00000265335		1230	ttG/ttC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249136	55249136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026158-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			280	150	790	0	ENST00000275493.2:c.2434C>A	p.Gln812Lys	p.Q812K	ENST00000275493	NM_005228.3	812	Cag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0042397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	131	495	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983066	201983066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	377	579	0	ENST00000359651.3:c.915C>A	p.Phe305Leu	p.F305L	ENST00000359651		305	ttC/ttA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	105	188	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	524	553	1	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	416	616	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788618	3788618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	143	277	0	ENST00000262367.5:c.4336C>T	p.Arg1446Cys	p.R1446C	ENST00000262367	NM_004380.2	1446	Cgc/Tgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138480	11138480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	111	464	0	ENST00000344626.4:c.3236C>T	p.Ser1079Leu	p.S1079L	ENST00000344626	NM_003072.3	1079	tCg/tTg																																																																														
AR	367	MSKCC	GRCh37	X	66863144	66863144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	103	249	0	ENST00000374690.3:c.1663C>T	p.Pro555Ser	p.P555S	ENST00000374690	NM_000044.3	555	Cca/Tca																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045756	26045756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	73	406	0	ENST00000540144.1:c.118C>T	p.His40Tyr	p.H40Y	ENST00000540144	NM_003531.2	40	Cat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389278	8389278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	149	379	0	ENST00000356435.5:c.4340G>A	p.Arg1447Gln	p.R1447Q	ENST00000356435		1447	cGg/cAg																																																																														
RB1	5925	MSKCC	GRCh37	13	49027156	49027156	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	125	276	0	ENST00000267163.4:c.1723C>T	p.Gln575Ter	p.Q575*	ENST00000267163	NM_000321.2	575	Caa/Taa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128018835	128018835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	156	416	0	ENST00000285398.2:c.2033G>T	p.Arg678Ile	p.R678I	ENST00000285398	NM_000122.1	678	aGa/aTa																																																																														
MST1	4485	MSKCC	GRCh37	3	49723037	49723037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	35	333	0	ENST00000449682.2:c.1379G>A	p.Arg460Gln	p.R460Q	ENST00000449682	NM_020998.3	460	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29653271	29653271	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	111	200	0	ENST00000358273.4:c.5268+1G>C		p.X1756_splice	ENST00000358273	NM_001042492.2	1756																																																																															
ATM	472	MSKCC	GRCh37	11	108224504	108224504	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	108	231	0	ENST00000278616.4:c.8683G>C	p.Glu2895Gln	p.E2895Q	ENST00000278616	NM_000051.3	2895	Gaa/Caa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101583	27101583	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	238	644	0	ENST00000324856.7:c.4866del	p.Ser1623ArgfsTer3	p.S1623Rfs*3	ENST00000324856	NM_006015.4	1622	gCc/gc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427021	49427022	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCCTGGGGGCCAA			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	323	589	0	ENST00000301067.7:c.11466_11467insTTGGCCCCCAGGGC	p.Pro3823LeufsTer12	p.P3823Lfs*12	ENST00000301067	NM_003482.3	3822	-/TTGGCCCCCAGGGC																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505391	25505391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	227	597	0	ENST00000264709.3:c.367G>C	p.Glu123Gln	p.E123Q	ENST00000264709	NM_175629.2	123	Gag/Cag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652028	36652029	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	656	762	0	ENST00000244741.5:c.152dup	p.Asp52ArgfsTer11	p.D52Rfs*11	ENST00000244741	NM_000389.4	50	-/T																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891214	151891214	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	76	364	0	ENST00000262189.6:c.4541-1G>C		p.X1514_splice	ENST00000262189	NM_170606.2	1514																																																																															
LYN	4067	MSKCC	GRCh37	8	56922487	56922487	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	173	331	0	ENST00000519728.1:c.1357A>G	p.Met453Val	p.M453V	ENST00000519728	NM_002350.3	453	Atg/Gtg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135776158	135776158	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	185	391	1	ENST00000298552.3:c.2569G>T	p.Glu857Ter	p.E857*	ENST00000298552	NM_001162426.1	857	Gag/Tag																																																																														
BTK	695	MSKCC	GRCh37	X	100608963	100608963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	16	224	0	ENST00000308731.7:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000308731	NM_000061.2	549	Gat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	441	399	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	14	240	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0045654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	43	321	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0045654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	55	334	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0045659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	35	295	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940889	49940889	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144338909		P-0045659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	131	698	0	ENST00000296474.3:c.154G>A	p.Gly52Arg	p.G52R	ENST00000296474	NM_002447.2	52	Gga/Aga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	49	295	0	ENST00000371953.3:c.376G>A	p.Ala126Thr	p.A126T	ENST00000371953	NM_000314.4	126	Gct/Act																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589629	67589630	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGATTA			P-0045659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	12	146	0	ENST00000274335.5:c.1393_1398dup	p.Arg465_Leu466dup	p.R465_L466dup	ENST00000274335		465	-/AGATTA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692889	89692889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	43	282	0	ENST00000371953.3:c.373A>G	p.Lys125Glu	p.K125E	ENST00000371953	NM_000314.4	125	Aaa/Gaa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591287	67591288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0045659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	15	250	0	ENST00000274335.5:c.1787_1788dup	p.Trp597SerfsTer66	p.W597Sfs*66	ENST00000274335		595	-/GA																																																																														
EZH2	2146	MSKCC	GRCh37	7	148504777	148504778	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	58	317	0	ENST00000320356.2:c.2216dup	p.Lys740GlufsTer23	p.K740Efs*23	ENST00000320356	NM_004456.4	739	ctg/ctTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	201	509	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	40	199	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120258	70120259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	484	539	0	ENST00000245479.2:c.1261dupA	p.Ser421LysfsTer157	p.S421Kfs*157	ENST00000245479	NM_000346.3	420	-/A																																																																														
ALK	238	MSKCC	GRCh37	2	29917730	29917730	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	132	579	0	ENST00000389048.3:c.938A>C	p.Lys313Thr	p.K313T	ENST00000389048	NM_004304.4	313	aAg/aCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420432	49420432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	177	599	1	ENST00000301067.7:c.15317G>A	p.Arg5106His	p.R5106H	ENST00000301067	NM_003482.3	5106	cGc/cAc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008044	29008044	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	46	298	0	ENST00000282397.4:c.725T>A	p.Leu242Ter	p.L242*	ENST00000282397	NM_002019.4	242	tTa/tAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72863717	72863717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	239	497	0	ENST00000268489.5:c.3490G>A	p.Ala1164Thr	p.A1164T	ENST00000268489	NM_006885.3	1164	Gct/Act																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119936	70119937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	55	385	0	ENST00000245479.2:c.940_941dup	p.Tyr315ProfsTer69	p.Y315Pfs*69	ENST00000245479	NM_000346.3	313	gtc/gtCAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249400	153249400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	84	362	0	ENST00000281708.4:c.1378C>T	p.His460Tyr	p.H460Y	ENST00000281708	NM_033632.3	460	Cat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	208	558	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	97	226	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	81	320	1	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																														
STK11	6794	MSKCC	GRCh37	19	1226617	1226617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	143	418	0	ENST00000326873.7:c.1273C>T	p.Arg425Cys	p.R425C	ENST00000326873	NM_000455.4	425	Cgc/Tgc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729709	41729709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	123	497	0	ENST00000242208.4:c.820G>A	p.Gly274Arg	p.G274R	ENST00000242208	NM_002192.2	274	Gga/Aga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930577	32930577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	48	191	0	ENST00000380152.3:c.7448G>T	p.Ser2483Ile	p.S2483I	ENST00000380152		2483	aGt/aTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201706	66201706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	104	312	0	ENST00000273854.3:c.2796G>C	p.Leu932Phe	p.L932F	ENST00000273854	NM_004439.5	932	ttG/ttC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107125	27107125	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	121	417	0	ENST00000324856.7:c.6736G>T	p.Glu2246Ter	p.E2246*	ENST00000324856	NM_006015.4	2246	Gag/Tag																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	297	279	0	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040707	47040707	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	124	468	0	ENST00000329236.7:c.1108C>T	p.Gln370Ter	p.Q370*	ENST00000329236	NM_001204466.1	370	Cag/Tag																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39322596	39322596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	26	331	0	ENST00000373001.3:c.396G>T	p.Met132Ile	p.M132I	ENST00000373001	NM_022157.3	132	atG/atT																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982134	201982135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	86	560	0	ENST00000359651.3:c.659dup	p.Asp220GlufsTer4	p.D220Efs*4	ENST00000359651		220	gat/gAat																																																																														
ATM	472	MSKCC	GRCh37	11	108186767	108186767	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	68	297	0	ENST00000278616.4:c.6125G>A	p.Trp2042Ter	p.W2042*	ENST00000278616	NM_000051.3	2042	tGg/tAg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060648	38060648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	101	618	0	ENST00000250448.2:c.1341G>T	p.Arg447Ser	p.R447S	ENST00000250448	NM_004496.3	447	agG/agT																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118864	70118864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	89	405	0	ENST00000245479.2:c.436C>A	p.Leu146Met	p.L146M	ENST00000245479	NM_000346.3	146	Ctg/Atg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139802647	139802661	+	inframe_deletion	In_Frame_Del	DEL	GCATTGCCGGGCACC	GCATTGCCGGGCACC	-			P-0045706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	66	423	0	ENST00000247668.2:c.492_506del	p.His165_Pro169del	p.H165_P169del	ENST00000247668	NM_021138.3	164	cgGCATTGCCGGGCACCc/cgc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610292	10610292	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201447398		P-0045709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	130	605	1	ENST00000171111.5:c.418G>A	p.Ala140Thr	p.A140T	ENST00000171111	NM_203500.1	140	Gcc/Acc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128246833	128246833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	122	428	0	ENST00000265960.3:c.1096G>A	p.Asp366Asn	p.D366N	ENST00000265960	NM_001006617.1	366	Gat/Aat																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123246905	123246905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	31	338	1	ENST00000358487.5:c.2020G>A	p.Ala674Thr	p.A674T	ENST00000358487	NM_000141.4	674	Gcc/Acc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990711	7990711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	52	516	0	ENST00000319144.4:c.50G>C	p.Gly17Ala	p.G17A	ENST00000319144	NM_001139.2	17	gGa/gCa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386417	31386417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	50	572	0	ENST00000328111.2:c.1642G>C	p.Ala548Pro	p.A548P	ENST00000328111	NM_006892.3	548	Gcc/Ccc																																																																														
BRAF	673	MSKCC	GRCh37	7	140477830	140477844	+	inframe_deletion	In_Frame_Del	DEL	TGAGGTGTAGGTGCT	TGAGGTGTAGGTGCT	-			P-0045710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	26	363	0	ENST00000288602.6:c.1464_1478del	p.Ala489_Gln493del	p.A489_Q493del	ENST00000288602	NM_004333.4	488	acAGCACCTACACCTCAg/acg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246091283	246091283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	83	270	0	ENST00000388985.4:c.652G>A	p.Gly218Arg	p.G218R	ENST00000388985		218	Ggg/Agg																																																																														
ATM	472	MSKCC	GRCh37	11	108155036	108155036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	88	284	0	ENST00000278616.4:c.3829G>A	p.Glu1277Lys	p.E1277K	ENST00000278616	NM_000051.3	1277	Gag/Aag																																																																														
SDHD	6392	MSKCC	GRCh37	11	111957656	111957656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	201	399	0	ENST00000375549.3:c.25G>A	p.Ala9Thr	p.A9T	ENST00000375549	NM_003002.3	9	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779532	3779532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	307	686	0	ENST00000262367.5:c.5516C>T	p.Pro1839Leu	p.P1839L	ENST00000262367	NM_004380.2	1839	cCc/cTc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89831420	89831420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	186	411	0	ENST00000389301.3:c.2656G>A	p.Glu886Lys	p.E886K	ENST00000389301	NM_000135.2	886	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097264	11097264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	214	511	0	ENST00000344626.4:c.755C>T	p.Pro252Leu	p.P252L	ENST00000344626	NM_003072.3	252	cCt/cTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9523319	9523319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	158	319	0	ENST00000353224.5:c.1918G>A	p.Glu640Lys	p.E640K	ENST00000353224	NM_177990.2	640	Gag/Aag																																																																														
ATR	545	MSKCC	GRCh37	3	142212086	142212086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	285	366	0	ENST00000350721.4:c.5966C>T	p.Thr1989Ile	p.T1989I	ENST00000350721	NM_001184.3	1989	aCc/aTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	119	248	1				ENST00000310581	NM_198253.2																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149439338	149439338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	246	418	0	ENST00000286301.3:c.2057G>A	p.Ser686Asn	p.S686N	ENST00000286301	NM_005211.3	686	aGc/aAc																																																																														
SMO	6608	MSKCC	GRCh37	7	128843351	128843351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	252	531	0	ENST00000249373.3:c.458C>T	p.Pro153Leu	p.P153L	ENST00000249373	NM_005631.4	153	cCc/cTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880094	151880094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	148	312	0	ENST00000262189.6:c.5230G>A	p.Glu1744Lys	p.E1744K	ENST00000262189	NM_170606.2	1744	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	74	271	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858210	9858210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	96	407	1	ENST00000330684.3:c.3191C>T	p.Thr1064Met	p.T1064M	ENST00000330684	NM_001134407.1	1064	aCg/aTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679823	88679823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	47	367	0	ENST00000360948.2:c.640G>A	p.Val214Met	p.V214M	ENST00000360948	NM_001012338.2	214	Gtg/Atg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342401	118342401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	64	188	0	ENST00000534358.1:c.527G>A	p.Arg176His	p.R176H	ENST00000534358	NM_005933.3	176	cGt/cAt																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873757	35873757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	161	434	0	ENST00000216797.5:c.94A>G	p.Ser32Gly	p.S32G	ENST00000216797	NM_020529.2	32	Agc/Ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0045714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	175	369	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0045714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	70	178	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396305	139396305	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	207	577	0	ENST00000277541.6:c.5533C>T	p.Gln1845Ter	p.Q1845*	ENST00000277541	NM_017617.3	1845	Cag/Tag																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056560	26056560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	88	201	0	ENST00000343677.2:c.97C>T	p.Arg33Cys	p.R33C	ENST00000343677	NM_005319.3	33	Cgt/Tgt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462237	120462237	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	30	258	0	ENST00000256646.2:c.5480-1G>T		p.X1827_splice	ENST00000256646	NM_024408.3	1827																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610339	81610339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	25	245	0	ENST00000298171.2:c.1937C>T	p.Ser646Leu	p.S646L	ENST00000298171	NM_000369.2	646	tCa/tTa																																																																														
NF2	4771	MSKCC	GRCh37	22	30070832	30070832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	68	310	0	ENST00000338641.4:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000338641	NM_000268.3	450	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41564814	41564814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	168	355	0	ENST00000263253.7:c.4115G>A	p.Cys1372Tyr	p.C1372Y	ENST00000263253	NM_001429.3	1372	tGc/tAc																																																																														
TCEB1	0	MSKCC	GRCh37	8	74859044	74859044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	37	285	0	ENST00000284811.8:c.160G>C	p.Glu54Gln	p.E54Q	ENST00000284811		54	Gag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	242	350	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652198	36652199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	158	550	0	ENST00000244741.5:c.322dup	p.Glu108GlyfsTer21	p.E108Gfs*21	ENST00000244741	NM_000389.4	107	gag/gaGg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246473	46246473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	176	199	0	ENST00000334344.6:c.4567G>A	p.Asp1523Asn	p.D1523N	ENST00000334344	NM_152641.2	1523	Gat/Aat																																																																														
RAD50	10111	MSKCC	GRCh37	5	131973826	131973826	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	76	322	0	ENST00000265335.6:c.3529G>C	p.Asp1177His	p.D1177H	ENST00000265335		1177	Gat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	118	539	0	ENST00000324856.7:c.6259G>T	p.Gly2087Ter	p.G2087*	ENST00000324856	NM_006015.4	2087	Gga/Tga																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651978	36651979	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	318	616	0	ENST00000244741.5:c.102_103del	p.Cys34Ter	p.C34*	ENST00000244741	NM_000389.4	34	TGt/t																																																																														
FH	2271	MSKCC	GRCh37	1	241665819	241665819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	224	346	0	ENST00000366560.3:c.1160T>C	p.Val387Ala	p.V387A	ENST00000366560	NM_000143.3	387	gTc/gCc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942079	81942079	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	101	519	0	ENST00000359376.3:c.1616A>C	p.Lys539Thr	p.K539T	ENST00000359376	NM_002661.3	539	aAg/aCg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011105	12011105	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	25	249	0	ENST00000353533.5:c.514-2A>C		p.X172_splice	ENST00000353533	NM_003010.3	172																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11094866	11094902	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGGTCCTTCCCCGGGCCCTGGCCCTTCCCCTGGA	GCCAGGTCCTTCCCCGGGCCCTGGCCCTTCCCCTGGA	-			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	114	770	0	ENST00000344626.4:c.43_79del	p.Gly15CysfsTer16	p.G15Cfs*16	ENST00000344626	NM_003072.3	13	cgGCCAGGTCCTTCCCCGGGCCCTGGCCCTTCCCCTGGA/cg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25466791	25466793	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	273	554	0	ENST00000264709.3:c.1910_1912del	p.Leu637_Ser638delinsPro	p.L637_S638delinsP	ENST00000264709	NM_175629.2	637	cTGTct/cct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989511	212989511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	80	270	0	ENST00000342788.4:c.200G>C	p.Ser67Thr	p.S67T	ENST00000342788	NM_005235.2	67	aGc/aCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628658	187628664	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAGCA	TTCAGCA	-			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	472	582	0	ENST00000441802.2:c.2318_2324del	p.Met773LysfsTer16	p.M773Kfs*16	ENST00000441802	NM_005245.3	773	aTGCTGAAa/aa																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64286858	64286858	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	67	339	0	ENST00000370651.3:c.73C>G	p.Pro25Ala	p.P25A	ENST00000370651	NM_003463.4	25	Cca/Gca																																																																														
BTK	695	MSKCC	GRCh37	X	100611791	100611791	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	125	415	0	ENST00000308731.7:c.1330G>C	p.Glu444Gln	p.E444Q	ENST00000308731	NM_000061.2	444	Gaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	342	69	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	173	173	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974675	21974675	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0045743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	87	85	0	ENST00000304494.5:c.150+2T>C		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974675	21974675	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0045743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	87	85	0	ENST00000304494.5:c.150+2T>C		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099315	157099332	+	inframe_deletion	In_Frame_Del	DEL	CCACCACCACCACCATGC	CCACCACCACCACCATGC	-			P-0045748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	23	264	0	ENST00000346085.5:c.267_284del	p.Ala90_His95del	p.A90_H95del	ENST00000346085	NM_020732.3	84	caCCACCACCACCACCATGCc/cac																																																																														
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	38	269	0	ENST00000257430.4:c.4309A>T	p.Lys1437Ter	p.K1437*	ENST00000257430	NM_000038.5	1437	Aaa/Taa																																																																														
PARK2	0	MSKCC	GRCh37	6	162206933	162206933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	13	207	0	ENST00000366898.1:c.742G>A	p.Val248Ile	p.V248I	ENST00000366898	NM_004562.2	248	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	322	478	0	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25462017	25462017	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	199	501	0	ENST00000264709.3:c.2390A>G	p.Asn797Ser	p.N797S	ENST00000264709	NM_175629.2	797	aAc/aGc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346346	73346346	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	148	276	0	ENST00000377767.4:c.1454A>T	p.Asp485Val	p.D485V	ENST00000377767	NM_014953.3	485	gAt/gTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29562648	29562648	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	222	357	0	ENST00000358273.4:c.3728T>C	p.Leu1243Pro	p.L1243P	ENST00000358273	NM_001042492.2	1243	cTg/cCg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082820	16082820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	48	36	0	ENST00000281043.3:c.634G>T	p.Ala212Ser	p.A212S	ENST00000281043	NM_005378.4	212	Gcc/Tcc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039451	49039451	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CG			P-0045749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	225	359	0	ENST00000267163.4:c.2436delinsCG	p.Tyr813ValfsTer2	p.Y813Vfs*2	ENST00000267163	NM_000321.2	812	ccA/ccCG																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644715	134644715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	91	515	1	ENST00000398015.3:c.116C>T	p.Ala39Val	p.A39V	ENST00000398015	NM_004441.4	39	gCg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859593	151859593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	37	470	1	ENST00000262189.6:c.11069C>T	p.Ser3690Leu	p.S3690L	ENST00000262189	NM_170606.2	3690	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	508	557	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043438	180043438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	491	589	0	ENST00000261937.6:c.3148G>A	p.Val1050Met	p.V1050M	ENST00000261937	NM_182925.4	1050	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112175615	112175615	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	151	265	0	ENST00000257430.4:c.4325delC	p.Pro1442LeufsTer31	p.P1442Lfs*31	ENST00000257430	NM_000038.5	1442	Cct/ct																																																																														
TEK	7010	MSKCC	GRCh37	9	27213494	27213494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	107	333	0	ENST00000380036.4:c.2890G>A	p.Asp964Asn	p.D964N	ENST00000380036	NM_000459.3	964	Gat/Aat																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330656	65330656	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	88	213	0	ENST00000342505.4:c.991-1G>A		p.X331_splice	ENST00000342505	NM_002227.2	331																																																																															
BARD1	580	MSKCC	GRCh37	2	215646102	215646102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	74	484	1	ENST00000260947.4:c.496C>T	p.Gln166Ter	p.Q166*	ENST00000260947	NM_000465.2	166	Cag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70353052	70353052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	111	358	0	ENST00000374080.3:c.4607G>A	p.Arg1536Gln	p.R1536Q	ENST00000374080		1536	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	203	327	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	315	618	0	ENST00000269305.4:c.817C>G	p.Arg273Gly	p.R273G	ENST00000269305	NM_001126112.2	273	Cgt/Ggt																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145436	58145436	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	288	414	1	ENST00000257904.6:c.65A>T	p.Lys22Met	p.K22M	ENST00000257904	NM_000075.3	22	aAg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0045921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	137	306	1				ENST00000310581	NM_198253.2																																																																																
XIAP	331	MSKCC	GRCh37	X	123019907	123019907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	91	536	2	ENST00000355640.3:c.395C>T	p.Pro132Leu	p.P132L	ENST00000355640		132	cCa/cTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	42	369	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0045925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	39	264	0				ENST00000310581	NM_198253.2																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156851271	156851271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	65	614	0	ENST00000524377.1:c.2228G>A	p.Gly743Glu	p.G743E	ENST00000524377	NM_002529.3	743	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117714445	117714445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	40	390	1	ENST00000368508.3:c.1204G>A	p.Glu402Lys	p.E402K	ENST00000368508	NM_002944.2	402	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962271	2962271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	94	676	0	ENST00000396946.4:c.2266G>A	p.Glu756Lys	p.E756K	ENST00000396946	NM_032415.4	756	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256242	16256243	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0045925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	34	497	1	ENST00000375759.3:c.3507_3508delinsTT	p.Arg1170Ter	p.R1170*	ENST00000375759	NM_015001.2	1169	taCCga/taTTga																																																																														
RFWD2	0	MSKCC	GRCh37	1	176132120	176132120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	34	332	0	ENST00000367669.3:c.647G>T	p.Gly216Val	p.G216V	ENST00000367669	NM_022457.5	216	gGc/gTc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138155	64138155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	46	602	1	ENST00000334205.4:c.2078C>T	p.Ser693Phe	p.S693F	ENST00000334205	NM_003942.2	693	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448780	49448780	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	70	570	0	ENST00000301067.7:c.79A>C	p.Ser27Arg	p.S27R	ENST00000301067	NM_003482.3	27	Agt/Cgt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5265148	5265148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	55	734	1	ENST00000357368.4:c.439G>A	p.Glu147Lys	p.E147K	ENST00000357368	NM_002850.3	147	Gag/Aag																																																																														
ERG	2078	MSKCC	GRCh37	21	39755437	39755437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	55	547	1	ENST00000288319.7:c.1328C>T	p.Ser443Phe	p.S443F	ENST00000288319	NM_182918.3	443	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0045926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	153	378	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	140	579	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661485	227661485	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	82	611	0	ENST00000305123.5:c.1970T>G	p.Val657Gly	p.V657G	ENST00000305123	NM_005544.2	657	gTg/gGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0045927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	50	406	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505556	25505556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	101	686	0	ENST00000264709.3:c.202G>T	p.Asp68Tyr	p.D68Y	ENST00000264709	NM_175629.2	68	Gac/Tac																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31388718	31388718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	48	481	0	ENST00000328111.2:c.1983G>T	p.Arg661Ser	p.R661S	ENST00000328111	NM_006892.3	661	agG/agT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	308	548	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310883	123310883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	158	462	0	ENST00000358487.5:c.545G>A	p.Gly182Glu	p.G182E	ENST00000358487	NM_000141.4	182	gGg/gAg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936374	78936374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	114	544	1	ENST00000306801.3:c.3806C>T	p.Ala1269Val	p.A1269V	ENST00000306801	NM_020761.2	1269	gCa/gTa																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872509	136872509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	80	212	0	ENST00000241393.3:c.989C>T	p.Ser330Phe	p.S330F	ENST00000241393	NM_003467.2	330	tCc/tTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266123	41266124	+	missense_variant	Missense_Mutation	DNP	TA	TA	AG			P-0046005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	37	264	0	ENST00000349496.5:c.120_121delinsAG	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	40	acTAcc/acAGcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29556193	29556193	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	58	150	1	ENST00000358273.4:c.2560C>T	p.Gln854Ter	p.Q854*	ENST00000358273	NM_001042492.2	854	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	53	327	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	53	327	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974730	21974730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	45	292	0	ENST00000304494.5:c.97G>T	p.Glu33Ter	p.E33*	ENST00000304494	NM_000077.4	33	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	53	327	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
HGF	3082	MSKCC	GRCh37	7	81358987	81358987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	57	383	0	ENST00000222390.5:c.974C>T	p.Pro325Leu	p.P325L	ENST00000222390	NM_000601.4	325	cCa/cTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099026	27099026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	53	403	0	ENST00000324856.7:c.3442C>T	p.Gln1148Ter	p.Q1148*	ENST00000324856	NM_006015.4	1148	Cag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663617	117663617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	42	356	0	ENST00000368508.3:c.4615C>T	p.Pro1539Ser	p.P1539S	ENST00000368508	NM_002944.2	1539	Cct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29653271	29653271	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	16	176	0	ENST00000358273.4:c.5268+1G>T		p.X1756_splice	ENST00000358273	NM_001042492.2	1756																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53223772	53223772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	130	790	0	ENST00000375401.3:c.3587G>C	p.Gly1196Ala	p.G1196A	ENST00000375401	NM_004187.3	1196	gGg/gCg																																																																														
PARK2	0	MSKCC	GRCh37	6	162683754	162683754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	64	445	0	ENST00000366898.1:c.215G>T	p.Arg72Ile	p.R72I	ENST00000366898	NM_004562.2	72	aGa/aTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410145	63410145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	58	649	0	ENST00000330258.3:c.3022C>A	p.Pro1008Thr	p.P1008T	ENST00000330258	NM_152424.3	1008	Cca/Aca																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865090	57865090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	39	776	1	ENST00000228682.2:c.2567C>A	p.Pro856His	p.P856H	ENST00000228682	NM_005269.2	856	cCt/cAt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30396469	30396469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	32	236	0	ENST00000331968.5:c.250A>G	p.Ile84Val	p.I84V	ENST00000331968	NM_002742.2	84	Att/Gtt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45375007	45375007	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	23	293	0	ENST00000262160.6:c.836A>G	p.Tyr279Cys	p.Y279C	ENST00000262160	NM_005901.5	279	tAt/tGt																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480009	50480010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	69	602	0	ENST00000394963.4:c.249dup	p.Asn84GlufsTer47	p.N84Efs*47	ENST00000394963	NM_003076.4	81	-/G																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515247	106515247	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	31	230	1	ENST00000359195.3:c.2390C>A	p.Ala797Glu	p.A797E	ENST00000359195	NM_002649.2	797	gCa/gAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11210204	11210204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	77	450	0	ENST00000361445.4:c.4549G>T	p.Ala1517Ser	p.A1517S	ENST00000361445	NM_004958.3	1517	Gct/Tct																																																																														
SESN2	83667	MSKCC	GRCh37	1	28605730	28605756	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCACTTCCGCCACTCAGAGAAGGTAT	GGCACTTCCGCCACTCAGAGAAGGTAT	-			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	42	411	0	ENST00000253063.3:c.1335_1356+5del		p.X445_splice	ENST00000253063	NM_031459.4	445																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932401	36932401	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	125	647	0	ENST00000361632.4:c.2068A>T	p.Thr690Ser	p.T690S	ENST00000361632		690	Acg/Tcg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206650025	206650025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	81	407	0	ENST00000367120.3:c.545C>T	p.Pro182Leu	p.P182L	ENST00000367120	NM_014002.3	182	cCc/cTc																																																																														
PARP1	142	MSKCC	GRCh37	1	226590060	226590060	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	66	446	0	ENST00000366794.5:c.141del	p.Val48SerfsTer47	p.V48Sfs*47	ENST00000366794	NM_001618.3	47	aaA/aa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64135680	64135680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	82	710	0	ENST00000334205.4:c.1148G>A	p.Gly383Asp	p.G383D	ENST00000334205	NM_003942.2	383	gGt/gAt																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625228	69625228	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	48	739	0	ENST00000334134.2:c.565G>T	p.Glu189Ter	p.E189*	ENST00000334134	NM_005247.2	189	Gag/Tag																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633604	69633604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	11	55	0	ENST00000334134.2:c.98G>T	p.Gly33Val	p.G33V	ENST00000334134	NM_005247.2	33	gGc/gTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420308	88420308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	47	337	0	ENST00000360948.2:c.2378G>T	p.Arg793Leu	p.R793L	ENST00000360948	NM_001012338.2	793	cGa/cTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678625	88678626	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	TT			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	28	300	1	ENST00000360948.2:c.910_911delinsAA	p.Pro304Asn	p.P304N	ENST00000360948	NM_001012338.2	304	CCc/AAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858454	9858454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	46	415	0	ENST00000330684.3:c.2947C>A	p.Gln983Lys	p.Q983K	ENST00000330684	NM_001134407.1	983	Caa/Aaa																																																																														
CDH1	999	MSKCC	GRCh37	16	68849596	68849596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	76	577	0	ENST00000261769.5:c.1499G>T	p.Gly500Val	p.G500V	ENST00000261769	NM_004360.3	500	gGc/gTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351936	89351936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	128	670	1	ENST00000301030.4:c.1014G>T	p.Lys338Asn	p.K338N	ENST00000301030	NM_001256183.1	338	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7579440	7579441	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	AAA			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	89	668	1	ENST00000269305.4:c.246_247delinsTTT	p.Ala83PhefsTer66	p.A83Ffs*66	ENST00000269305	NM_001126112.2	82	ccGGcg/ccTTTcg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627793	37627794	+	missense_variant	Missense_Mutation	DNP	CA	CA	TT			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	84	593	0	ENST00000447079.4:c.1708_1709delinsTT	p.Gln570Leu	p.Q570L	ENST00000447079	NM_015083.1	570	CAg/TTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866352	37866353	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	34	602	0	ENST00000269571.5:c.658dup	p.Cys220LeufsTer15	p.C220Lfs*15	ENST00000269571		219	-/T																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260238	19260238	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	68	488	0	ENST00000162023.5:c.55G>T	p.Val19Leu	p.V19L	ENST00000162023		19	Gtg/Ttg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795088	242795088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	84	801	0	ENST00000334409.5:c.121C>A	p.Leu41Met	p.L41M	ENST00000334409	NM_005018.2	41	Ctg/Atg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713354	40713354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	40	578	0	ENST00000373198.4:c.4161C>A	p.Asp1387Glu	p.D1387E	ENST00000373198	NM_133170.3	1387	gaC/gaA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391198	89391198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	39	334	0	ENST00000336596.2:c.1264C>A	p.Pro422Thr	p.P422T	ENST00000336596	NM_005233.5	422	Cca/Aca																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119720921	119720921	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	70	375	0	ENST00000316626.5:c.254A>G	p.Lys85Arg	p.K85R	ENST00000316626		85	aAg/aGg																																																																														
ATR	545	MSKCC	GRCh37	3	142231111	142231111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	63	308	0	ENST00000350721.4:c.4843G>T	p.Asp1615Tyr	p.D1615Y	ENST00000350721	NM_001184.3	1615	Gac/Tac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356332	66356332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	28	323	0	ENST00000273854.3:c.1165G>T	p.Val389Leu	p.V389L	ENST00000273854	NM_004439.5	389	Gtg/Ttg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143033810	143033811	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	20	288	0	ENST00000262992.4:c.2160_2161delinsAA	p.Leu721Ile	p.L721I	ENST00000262992	NM_001101669.1	720	aaGCtt/aaAAtt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131973868	131973868	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	55	254	0	ENST00000265335.6:c.3571G>T	p.Gly1191Ter	p.G1191*	ENST00000265335		1191	Gga/Tga																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149501453	149501453	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	39	486	0	ENST00000261799.4:c.2334C>A	p.Tyr778Ter	p.Y778*	ENST00000261799	NM_002609.3	778	taC/taA																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522725	176522725	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	43	603	0	ENST00000292408.4:c.1821+1G>C		p.X607_splice	ENST00000292408	NM_213647.1	607																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184966	32184966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	68	592	0	ENST00000375023.3:c.1702G>T	p.Asp568Tyr	p.D568Y	ENST00000375023	NM_004557.3	568	Gac/Tac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502301	157502301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	60	383	0	ENST00000346085.5:c.3334G>T	p.Gly1112Cys	p.G1112C	ENST00000346085	NM_020732.3	1112	Ggt/Tgt																																																																														
PARK2	0	MSKCC	GRCh37	6	161969887	161969887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	32	419	0	ENST00000366898.1:c.1082G>T	p.Gly361Val	p.G361V	ENST00000366898	NM_004562.2	361	gGg/gTg																																																																														
PARK2	0	MSKCC	GRCh37	6	161990389	161990389	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	39	280	0	ENST00000366898.1:c.931C>A	p.Gln311Lys	p.Q311K	ENST00000366898	NM_004562.2	311	Cag/Aag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729391	41729391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	35	509	0	ENST00000242208.4:c.1138G>T	p.Gly380Cys	p.G380C	ENST00000242208	NM_002192.2	380	Ggc/Tgc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508431	106508431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	28	305	0	ENST00000359195.3:c.425C>A	p.Pro142Gln	p.P142Q	ENST00000359195	NM_002649.2	142	cCg/cAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404560	8404560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	22	171	0	ENST00000356435.5:c.4187G>T	p.Arg1396Leu	p.R1396L	ENST00000356435		1396	cGg/cTg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128347847	128347847	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	52	479	0	ENST00000265960.3:c.658G>T	p.Glu220Ter	p.E220*	ENST00000265960	NM_001006617.1	220	Gag/Tag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921436	39921436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	33	463	0	ENST00000378444.4:c.4384G>A	p.Ala1462Thr	p.A1462T	ENST00000378444	NM_001123385.1	1462	Gct/Act																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934420	39934420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	33	393	0	ENST00000378444.4:c.179C>A	p.Thr60Lys	p.T60K	ENST00000378444	NM_001123385.1	60	aCg/aAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028878	47028878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	36	532	0	ENST00000329236.7:c.182C>G	p.Ser61Cys	p.S61C	ENST00000329236	NM_001204466.1	61	tCt/tGt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412850	63412850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	53	642	1	ENST00000330258.3:c.317C>A	p.Pro106His	p.P106H	ENST00000330258	NM_152424.3	106	cCt/cAt																																																																														
AR	367	MSKCC	GRCh37	X	66931521	66931521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	30	407	0	ENST00000374690.3:c.2163G>T	p.Lys721Asn	p.K721N	ENST00000374690	NM_000044.3	721	aaG/aaT																																																																														
MED12	9968	MSKCC	GRCh37	X	70350054	70350054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	35	412	0	ENST00000374080.3:c.4037G>T	p.Arg1346Leu	p.R1346L	ENST00000374080		1346	cGc/cTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76845398	76845398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	21	219	0	ENST00000373344.5:c.6123C>G	p.Ser2041Arg	p.S2041R	ENST00000373344	NM_000489.3	2041	agC/agG																																																																														
ATRX	546	MSKCC	GRCh37	X	76872093	76872093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	18	260	0	ENST00000373344.5:c.5554G>T	p.Asp1852Tyr	p.D1852Y	ENST00000373344	NM_000489.3	1852	Gat/Tat																																																																														
HGF	3082	MSKCC	GRCh37	7	81358986	81358986	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	58	394	0	ENST00000222390.5:c.975del	p.Cys326ValfsTer14	p.C326Vfs*14	ENST00000222390	NM_000601.4	325	ccA/cc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43749707	43749707	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TC			P-0046008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	60	367	0	ENST00000523873.1:c.560delinsTC	p.Cys187PhefsTer17	p.C187Ffs*17	ENST00000523873		187	tGc/tTCc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	257	576	0	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894916	101894916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0046009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	132	247	0	ENST00000374994.4:c.469C>T	p.Arg157Ter	p.R157*	ENST00000374994	NM_004612.2	157	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653817	89653817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	110	266	0	ENST00000371953.3:c.115G>C	p.Ala39Pro	p.A39P	ENST00000371953	NM_000314.4	39	Gca/Cca																																																																														
JAK1	3716	MSKCC	GRCh37	1	65301808	65301809	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0046009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	80	133	0	ENST00000342505.4:c.3230dupA	p.Tyr1077Ter	p.Y1077*	ENST00000342505	NM_002227.2	1077	tac/taAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639962	3639962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0046009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	324	736	0	ENST00000294008.3:c.3677G>A	p.Arg1226Gln	p.R1226Q	ENST00000294008	NM_032444.2	1226	cGg/cAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295725	212295725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	123	389	0	ENST00000342788.4:c.2588G>T	p.Gly863Val	p.G863V	ENST00000342788	NM_005235.2	863	gGg/gTg																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22143007	22143007	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	143	324	0	ENST00000215832.6:c.700C>G	p.Leu234Val	p.L234V	ENST00000215832	NM_002745.4	234	Ctt/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	372	599	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073406	8073406	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0046012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	306	380	0	ENST00000377482.5:c.1253A>G	p.Asn418Ser	p.N418S	ENST00000377482	NM_018948.3	418	aAt/aGt																																																																														
SDHD	6392	MSKCC	GRCh37	11	111959609	111959609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0046012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	370	491	0	ENST00000375549.3:c.188C>A	p.Ser63Tyr	p.S63Y	ENST00000375549	NM_003002.3	63	tCt/tAt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3634858	3634858	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0046012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	254	521	0	ENST00000294008.3:c.4651A>T	p.Lys1551Ter	p.K1551*	ENST00000294008	NM_032444.2	1551	Aag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66218779	66218779	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0046012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	90	163	0	ENST00000273854.3:c.2279C>G	p.Ser760Cys	p.S760C	ENST00000273854	NM_004439.5	760	tCt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0046016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	20	309	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0046016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	58	669	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	26	413	2	ENST00000304494.5:c.235dup	p.Thr79AsnfsTer41	p.T79Nfs*41	ENST00000304494	NM_000077.4	79	acc/aAcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	26	413	2	ENST00000304494.5:c.235dup	p.Thr79AsnfsTer41	p.T79Nfs*41	ENST00000304494	NM_000077.4	79	acc/aAcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0046016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	26	413	2	ENST00000304494.5:c.235dup	p.Thr79AsnfsTer41	p.T79Nfs*41	ENST00000304494	NM_000077.4	79	acc/aAcc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941988	44941988	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0046016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	12	278	0	ENST00000377967.4:c.3238A>T	p.Lys1080Ter	p.K1080*	ENST00000377967	NM_021140.2	1080	Aaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	138	369	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	285	698	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093455	30093455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	134	402	0	ENST00000331968.5:c.1808G>A	p.Arg603His	p.R603H	ENST00000331968	NM_002742.2	603	cGt/cAt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508629	106508629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	222	545	0	ENST00000359195.3:c.623C>T	p.Pro208Leu	p.P208L	ENST00000359195	NM_002649.2	208	cCg/cTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266125	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0026774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	143	394	1	ENST00000349496.5:c.121_122delinsCT	p.Thr41Leu	p.T41L	ENST00000349496	NM_001904.3	41	ACc/CTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0029401-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	69	252	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029401-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	139	435	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798968	45798968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029401-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	133	520	1	ENST00000372115.3:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000372115	NM_001048171.1	112	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0039430-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	41	318	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288645	33288645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039430-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			336	46	381	0	ENST00000374542.5:c.907G>T	p.Gly303Cys	p.G303C	ENST00000374542	NM_001141970.1	303	Ggc/Tgc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039430-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	93	591	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562628	29562628	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0039430-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	64	282	0	ENST00000358273.4:c.3709-1G>A		p.X1237_splice	ENST00000358273	NM_001042492.2	1237																																																																															
STK11	6794	MSKCC	GRCh37	19	1221976	1221976	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039430-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	133	595	0	ENST00000326873.7:c.891G>T	p.Arg297Ser	p.R297S	ENST00000326873	NM_000455.4	297	agG/agT																																																																														
ERF	2077	MSKCC	GRCh37	19	42752723	42752724	+	missense_variant	Missense_Mutation	DNP	CG	CG	AT			P-0039430-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	66	565	1	ENST00000222329.4:c.1540_1541delinsAT	p.Arg514Ile	p.R514I	ENST00000222329	NM_006494.2	514	CGt/ATt																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665329	138665329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039430-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			662	35	588	2	ENST00000330315.3:c.236G>T	p.Gly79Val	p.G79V	ENST00000330315	NM_023067.3	79	gGc/gTc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56183205	56183205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039430-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	26	248	0	ENST00000399503.3:c.4115G>T	p.Gly1372Val	p.G1372V	ENST00000399503	NM_005921.1	1372	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0041962-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			212	473	457	1	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041962-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	103	202	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591101	67591101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041962-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			77	117	185	0	ENST00000274335.5:c.1694G>T	p.Ser565Ile	p.S565I	ENST00000274335		565	aGc/aTc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467993	50467993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041962-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	115	423	1	ENST00000331340.3:c.1228G>A	p.Gly410Ser	p.G410S	ENST00000331340	NM_006060.4	410	Ggt/Agt																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202701	128202701	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0041962-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			855	142	390	0	ENST00000341105.2:c.1017+2T>G		p.X339_splice	ENST00000341105	NM_032638.4	339																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921646	39921646	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0041962-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	73	293	0	ENST00000378444.4:c.4174G>C	p.Val1392Leu	p.V1392L	ENST00000378444	NM_001123385.1	1392	Gtg/Ctg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0044942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	141	561	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	96	323	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	217	476	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	217	476	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821989	72821989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	81	338	0	ENST00000268489.5:c.10186C>A	p.Pro3396Thr	p.P3396T	ENST00000268489	NM_006885.3	3396	Ccc/Acc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910342	29910342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			805	191	660	0	ENST00000376809.5:c.12G>A	p.Met4Ile	p.M4I	ENST00000376809	NM_002116.7	4	atG/atA																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2493197	2493197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145758620		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	555	681	1	ENST00000355716.4:c.637G>A	p.Val213Ile	p.V213I	ENST00000355716	NM_003820.2	213	Gtc/Atc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780827	9780827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	261	790	0	ENST00000377346.4:c.1549C>T	p.Arg517Trp	p.R517W	ENST00000377346	NM_005026.3	517	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257728	16257728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	387	449	0	ENST00000375759.3:c.4993G>A	p.Ala1665Thr	p.A1665T	ENST00000375759	NM_015001.2	1665	Gcg/Acg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262082	16262082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	291	390	0	ENST00000375759.3:c.9347C>T	p.Ala3116Val	p.A3116V	ENST00000375759	NM_015001.2	3116	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089489	27089489	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	568	707	0	ENST00000324856.7:c.2445T>G	p.Tyr815Ter	p.Y815*	ENST00000324856	NM_006015.4	815	taT/taG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100151	27100151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	186	676	0	ENST00000324856.7:c.3947C>T	p.Ser1316Leu	p.S1316L	ENST00000324856	NM_006015.4	1316	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101055	27101055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	616	746	0	ENST00000324856.7:c.4337G>A	p.Arg1446Gln	p.R1446Q	ENST00000324856	NM_006015.4	1446	cGa/cAa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933510	36933510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	703	861	0	ENST00000361632.4:c.1777G>A	p.Ala593Thr	p.A593T	ENST00000361632		593	Gcc/Acc																																																																														
MPL	4352	MSKCC	GRCh37	1	43812205	43812205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	165	574	1	ENST00000372470.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000372470	NM_005373.2	357	cGa/cAa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798467	45798467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	634	732	1	ENST00000372115.3:c.502C>T	p.Arg168Cys	p.R168C	ENST00000372115	NM_001048171.1	168	Cgt/Tgt																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46715735	46715735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	429	526	1	ENST00000371975.4:c.154C>T	p.Arg52Trp	p.R52W	ENST00000371975	NM_003579.3	52	Cgg/Tgg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46725710	46725710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	473	502	1	ENST00000371975.4:c.346G>T	p.Asp116Tyr	p.D116Y	ENST00000371975	NM_003579.3	116	Gat/Tat																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743950	46743950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	416	464	0	ENST00000371975.4:c.2240G>A	p.Arg747His	p.R747H	ENST00000371975	NM_003579.3	747	cGc/cAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310570	65310570	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	97	381	0	ENST00000342505.4:c.2118G>T	p.Glu706Asp	p.E706D	ENST00000342505	NM_002227.2	706	gaG/gaT																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330648	65330648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	66	223	0	ENST00000342505.4:c.998C>T	p.Ser333Phe	p.S333F	ENST00000342505	NM_002227.2	333	tCt/tTt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332824	65332824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	176	284	0	ENST00000342505.4:c.715C>T	p.Arg239Trp	p.R239W	ENST00000342505	NM_002227.2	239	Cgg/Tgg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115261278	115261278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	396	483	0	ENST00000438362.2:c.2443C>T	p.Arg815Cys	p.R815C	ENST00000438362	NM_001242891.1	815	Cgc/Tgc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115280664	115280664	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	96	455	0	ENST00000438362.2:c.367C>T	p.Arg123Ter	p.R123*	ENST00000438362	NM_001242891.1	123	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510802	120510802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	399	427	0	ENST00000256646.2:c.1162G>A	p.Ala388Thr	p.A388T	ENST00000256646	NM_024408.3	388	Gca/Aca																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843535	156843535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	623	723	0	ENST00000524377.1:c.961G>A	p.Val321Met	p.V321M	ENST00000524377	NM_002529.3	321	Gtg/Atg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846300	156846300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150579345		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	735	942	0	ENST00000524377.1:c.1741G>A	p.Glu581Lys	p.E581K	ENST00000524377	NM_002529.3	581	Gag/Aag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849143	156849143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	641	746	0	ENST00000524377.1:c.2035G>A	p.Asp679Asn	p.D679N	ENST00000524377	NM_002529.3	679	Gac/Aac																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849863	156849863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	546	715	0	ENST00000524377.1:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000524377	NM_002529.3	707	Gag/Aag																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746017	162746017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	256	300	0	ENST00000367921.3:c.2140C>T	p.Arg714Ter	p.R714*	ENST00000367921	NM_006182.2	714	Cga/Tga																																																																														
NUF2	83540	MSKCC	GRCh37	1	163306550	163306550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201079271		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	170	317	0	ENST00000271452.3:c.347G>A	p.Arg116Gln	p.R116Q	ENST00000271452	NM_145697.2	116	cGg/cAg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175706	176175706	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	590	683	0	ENST00000367669.3:c.407+2T>C		p.X136_splice	ENST00000367669	NM_022457.5	136																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206647794	206647794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	384	453	0	ENST00000367120.3:c.208C>T	p.Leu70Phe	p.L70F	ENST00000367120	NM_014002.3	70	Ctc/Ttc																																																																														
PARP1	142	MSKCC	GRCh37	1	226551647	226551647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	361	429	0	ENST00000366794.5:c.2783A>G	p.Asn928Ser	p.N928S	ENST00000366794	NM_001618.3	928	aAc/aGc																																																																														
PARP1	142	MSKCC	GRCh37	1	226574031	226574031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201975538		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	317	351	0	ENST00000366794.5:c.830C>T	p.Ser277Leu	p.S277L	ENST00000366794	NM_001618.3	277	tCg/tTg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63829525	63829525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	257	326	1	ENST00000279873.7:c.1168G>A	p.Ala390Thr	p.A390T	ENST00000279873	NM_032199.2	390	Gct/Act																																																																														
TET1	80312	MSKCC	GRCh37	10	70451273	70451273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	137	671	0	ENST00000373644.4:c.6113G>A	p.Arg2038His	p.R2038H	ENST00000373644	NM_030625.2	2038	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690823	89690823	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	99	274	0	ENST00000371953.3:c.230A>G	p.Asp77Gly	p.D77G	ENST00000371953	NM_000314.4	77	gAc/gGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	197	423	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89712007	89712007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	137	196	0	ENST00000371953.3:c.625G>A	p.Gly209Arg	p.G209R	ENST00000371953	NM_000314.4	209	Gga/Aga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720870	89720870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	248	407	0	ENST00000371953.3:c.1021T>G	p.Phe341Val	p.F341V	ENST00000371953	NM_000314.4	341	Ttt/Gtt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114901057	114901057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	362	419	1	ENST00000543371.1:c.667G>A	p.Asp223Asn	p.D223N	ENST00000543371	NM_001198531.1	223	Gac/Aac																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154350	2154350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	850	1062	1	ENST00000434045.2:c.578G>A	p.Arg193His	p.R193H	ENST00000434045	NM_001127598.1	193	cGc/cAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132927	64132927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145356210		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	481	645	1	ENST00000334205.4:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000334205	NM_003942.2	354	cGa/cAa																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588196	69588196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201349393		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	505	652	0	ENST00000168712.1:c.502G>A	p.Ala168Thr	p.A168T	ENST00000168712	NM_002007.2	168	Gcc/Acc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939479	71939479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1583	361	1035	1	ENST00000298229.2:c.334G>A	p.Ala112Thr	p.A112T	ENST00000298229	NM_001567.3	112	Gcc/Acc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940539	71940539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	544	672	0	ENST00000298229.2:c.690G>T	p.Glu230Asp	p.E230D	ENST00000298229	NM_001567.3	230	gaG/gaT																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943672	71943672	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	499	555	0	ENST00000298229.2:c.1715G>T	p.Arg572Met	p.R572M	ENST00000298229	NM_001567.3	572	aGg/aTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946224	71946224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	268	688	0	ENST00000298229.2:c.2480C>T	p.Ser827Phe	p.S827F	ENST00000298229	NM_001567.3	827	tCc/tTc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94917655	94917655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	240	405	0	ENST00000536441.1:c.866G>A	p.Arg289His	p.R289H	ENST00000536441	NM_144665.3	289	cGt/cAt																																																																														
PGR	5241	MSKCC	GRCh37	11	100996849	100996849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	330	450	0	ENST00000325455.5:c.1678G>A	p.Glu560Lys	p.E560K	ENST00000325455	NM_001202474.3	560	Gag/Aag																																																																														
PGR	5241	MSKCC	GRCh37	11	100999705	100999705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1481	120	1043	1	ENST00000325455.5:c.97G>A	p.Ala33Thr	p.A33T	ENST00000325455	NM_001202474.3	33	Gca/Aca																																																																														
YAP1	10413	MSKCC	GRCh37	11	102080255	102080255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	267	361	0	ENST00000282441.5:c.992G>A	p.Arg331Gln	p.R331Q	ENST00000282441	NM_001130145.2	331	cGg/cAg																																																																														
ATM	472	MSKCC	GRCh37	11	108122732	108122732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	67	328	0	ENST00000278616.4:c.1776C>A	p.Ser592Arg	p.S592R	ENST00000278616	NM_000051.3	592	agC/agA																																																																														
ATM	472	MSKCC	GRCh37	11	108127063	108127063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	191	259	0	ENST00000278616.4:c.2246C>A	p.Ala749Asp	p.A749D	ENST00000278616	NM_000051.3	749	gCc/gAc																																																																														
ATM	472	MSKCC	GRCh37	11	108172385	108172385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	163	321	0	ENST00000278616.4:c.5188C>T	p.Arg1730Ter	p.R1730*	ENST00000278616	NM_000051.3	1730	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108175528	108175528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	253	356	0	ENST00000278616.4:c.5623C>T	p.Arg1875Ter	p.R1875*	ENST00000278616	NM_000051.3	1875	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108216630	108216630	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	117	190	0	ENST00000278616.4:c.8579C>A	p.Ser2860Tyr	p.S2860Y	ENST00000278616	NM_000051.3	2860	tCt/tAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373178	118373178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	264	363	0	ENST00000534358.1:c.6571C>T	p.Arg2191Ter	p.R2191*	ENST00000534358	NM_005933.3	2191	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390417	118390417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	497	507	1	ENST00000534358.1:c.11231G>A	p.Arg3744Gln	p.R3744Q	ENST00000534358	NM_005933.3	3744	cGa/cAa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497584	125497584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	125	233	0	ENST00000428830.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000428830	NM_001114121.2	50	Gaa/Aaa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432864	432864	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	363	421	0	ENST00000399788.2:c.2052T>G	p.Phe684Leu	p.F684L	ENST00000399788	NM_001042603.1	684	ttT/ttG																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	227	503	0	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719972	18719972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	24	279	0	ENST00000266497.5:c.3869T>C	p.Val1290Ala	p.V1290A	ENST00000266497		1290	gTa/gCa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246297	46246297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	260	301	0	ENST00000334344.6:c.4391G>A	p.Arg1464His	p.R1464H	ENST00000334344	NM_152641.2	1464	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426528	49426528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	801	927	0	ENST00000301067.7:c.11960C>A	p.Pro3987His	p.P3987H	ENST00000301067	NM_003482.3	3987	cCt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444222	49444222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	797	936	0	ENST00000301067.7:c.3149C>T	p.Ser1050Phe	p.S1050F	ENST00000301067	NM_003482.3	1050	tCc/tTc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480117	50480117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	358	345	0	ENST00000394963.4:c.351A>C	p.Gln117His	p.Q117H	ENST00000394963	NM_003076.4	117	caA/caC																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480121	50480121	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	293	322	0	ENST00000394963.4:c.355C>T	p.Arg119Ter	p.R119*	ENST00000394963	NM_003076.4	119	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493497	56493497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	110	370	0	ENST00000267101.3:c.2905G>A	p.Ala969Thr	p.A969T	ENST00000267101	NM_001982.3	969	Gcc/Acc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863391	57863391	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139792497		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	603	763	1	ENST00000228682.2:c.1486C>T	p.Arg496Cys	p.R496C	ENST00000228682	NM_005269.2	496	Cgc/Tgc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145099	58145099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3211612		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	497	595	0	ENST00000257904.6:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000257904	NM_000075.3	82	cGa/cAa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112891184	112891184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	376	525	1	ENST00000351677.2:c.518G>A	p.Arg173His	p.R173H	ENST00000351677	NM_002834.3	173	cGc/cAc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926915	112926915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	46	455	0	ENST00000351677.2:c.1535G>A	p.Arg512Gln	p.R512Q	ENST00000351677	NM_002834.3	512	cGa/cAa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112939958	112939958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	235	290	0	ENST00000351677.2:c.1610G>T	p.Arg537Met	p.R537M	ENST00000351677	NM_002834.3	537	aGg/aTg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120796847	120796847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1236	258	794	3	ENST00000257552.2:c.412G>A	p.Ala138Thr	p.A138T	ENST00000257552	NM_002442.3	138	Gcc/Acc																																																																														
SETD8	0	MSKCC	GRCh37	12	123875263	123875263	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	28	97	0	ENST00000330479.4:c.219G>T	p.Glu73Asp	p.E73D	ENST00000330479	NM_020382.3	73	gaG/gaT																																																																														
POLE	5426	MSKCC	GRCh37	12	133215787	133215787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	204	631	0	ENST00000320574.5:c.5476C>T	p.Arg1826Trp	p.R1826W	ENST00000320574	NM_006231.2	1826	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	429	534	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																																																														
POLE	5426	MSKCC	GRCh37	12	133252014	133252014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	136	742	1	ENST00000320574.5:c.1196C>T	p.Ala399Val	p.A399V	ENST00000320574	NM_006231.2	399	gCg/gTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133257273	133257273	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	252	337	0	ENST00000320574.5:c.205A>G	p.Thr69Ala	p.T69A	ENST00000320574	NM_006231.2	69	Acc/Gcc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562247	21562247	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143741195		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1490	297	960	0	ENST00000382592.4:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000382592	NM_014572.2	558	Cgc/Tgc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562463	21562463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	287	348	1	ENST00000382592.4:c.1456G>A	p.Ala486Thr	p.A486T	ENST00000382592	NM_014572.2	486	Gcc/Acc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21565498	21565498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	539	673	0	ENST00000382592.4:c.388G>A	p.Glu130Lys	p.E130K	ENST00000382592	NM_014572.2	130	Gag/Aag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877366	28877366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	401	465	0	ENST00000282397.4:c.3955G>A	p.Ala1319Thr	p.A1319T	ENST00000282397	NM_002019.4	1319	Gcg/Acg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964022	28964022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	207	360	0	ENST00000282397.4:c.1880C>T	p.Ser627Phe	p.S627F	ENST00000282397	NM_002019.4	627	tCc/tTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914664	32914664	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	164	399	0	ENST00000380152.3:c.6172T>A	p.Phe2058Ile	p.F2058I	ENST00000380152		2058	Ttt/Att																																																																														
BRCA2	675	MSKCC	GRCh37	13	32931912	32931912	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	143	277	0	ENST00000380152.3:c.7651A>C	p.Lys2551Gln	p.K2551Q	ENST00000380152		2551	Aaa/Caa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133802	41133802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	28	356	0	ENST00000379561.5:c.1826G>A	p.Arg609His	p.R609H	ENST00000379561	NM_002015.3	609	cGc/cAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48916769	48916769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	147	335	0	ENST00000267163.4:c.299G>A	p.Gly100Glu	p.G100E	ENST00000267163	NM_000321.2	100	gGa/gAa																																																																														
RB1	5925	MSKCC	GRCh37	13	49030478	49030479	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	149	234	0	ENST00000267163.4:c.1959dupA	p.Val654SerfsTer14	p.V654Sfs*14	ENST00000267163	NM_000321.2	651	-/A																																																																														
RB1	5925	MSKCC	GRCh37	13	49039374	49039374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	363	569	0	ENST00000267163.4:c.2359C>T	p.Arg787Ter	p.R787*	ENST00000267163	NM_000321.2	787	Cga/Tga																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281656	49281656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	566	671	0	ENST00000282018.3:c.703G>A	p.Glu235Lys	p.E235K	ENST00000282018	NM_020377.2	235	Gaa/Aaa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103510736	103510736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56255799		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	149	300	0	ENST00000355739.4:c.640C>T	p.Arg214Cys	p.R214C	ENST00000355739	NM_000123.3	214	Cgc/Tgc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514688	103514688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	221	337	0	ENST00000355739.4:c.1189G>A	p.Asp397Asn	p.D397N	ENST00000355739	NM_000123.3	397	Gat/Aat																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524750	103524750	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	177	253	0	ENST00000355739.4:c.2879+2T>C		p.X960_splice	ENST00000355739	NM_000123.3	960																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103527789	103527789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	208	269	0	ENST00000355739.4:c.3097G>A	p.Glu1033Lys	p.E1033K	ENST00000355739	NM_000123.3	1033	Gaa/Aaa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436204	110436204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	547	678	0	ENST00000375856.3:c.2197G>A	p.Ala733Thr	p.A733T	ENST00000375856	NM_003749.2	733	Gcc/Acc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436851	110436851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	587	891	0	ENST00000375856.3:c.1550G>A	p.Arg517Gln	p.R517Q	ENST00000375856	NM_003749.2	517	cGa/cAa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437691	110437691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	655	850	1	ENST00000375856.3:c.710C>T	p.Ser237Leu	p.S237L	ENST00000375856	NM_003749.2	237	tCg/tTg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060863	38060863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	652	843	1	ENST00000250448.2:c.1126G>A	p.Ala376Thr	p.A376T	ENST00000250448	NM_004496.3	376	Gca/Aca																																																																														
TSHR	7253	MSKCC	GRCh37	14	81563024	81563024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	76	326	0	ENST00000298171.2:c.587C>T	p.Ala196Val	p.A196V	ENST00000298171	NM_000369.2	196	gCt/gTt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574253	95574253	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149242330		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	151	251	0	ENST00000343455.3:c.2614G>A	p.Ala872Thr	p.A872T	ENST00000343455	NM_177438.2	872	Gct/Act																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590765	95590765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	227	299	0	ENST00000343455.3:c.1144G>A	p.Glu382Lys	p.E382K	ENST00000343455	NM_177438.2	382	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961363	41961363	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	340	371	0	ENST00000219905.7:c.271C>T	p.Arg91Ter	p.R91*	ENST00000219905	NM_001164273.1	91	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42003283	42003283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	229	507	0	ENST00000219905.7:c.2820G>T	p.Lys940Asn	p.K940N	ENST00000219905	NM_001164273.1	940	aaG/aaT																																																																														
MGA	23269	MSKCC	GRCh37	15	42052723	42052723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	139	373	0	ENST00000219905.7:c.7394C>T	p.Thr2465Ile	p.T2465I	ENST00000219905	NM_001164273.1	2465	aCt/aTt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748890	43748890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201785039		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	618	634	0	ENST00000382044.4:c.1916G>A	p.Arg639Gln	p.R639Q	ENST00000382044	NM_001141980.1	639	cGa/cAa																																																																														
CD276	80381	MSKCC	GRCh37	15	74003508	74003508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	507	571	1	ENST00000318443.5:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000318443	NM_001024736.1	527	Gaa/Aaa																																																																														
IDH2	3418	MSKCC	GRCh37	15	90628303	90628303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	711	939	1	ENST00000330062.3:c.1108G>A	p.Ala370Thr	p.A370T	ENST00000330062	NM_002168.2	370	Gcc/Acc																																																																														
BLM	641	MSKCC	GRCh37	15	91292628	91292628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	64	184	0	ENST00000355112.3:c.130G>T	p.Asp44Tyr	p.D44Y	ENST00000355112	NM_000057.2	44	Gat/Tat																																																																														
BLM	641	MSKCC	GRCh37	15	91352442	91352442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	70	301	0	ENST00000355112.3:c.3827C>T	p.Ala1276Val	p.A1276V	ENST00000355112	NM_000057.2	1276	gCg/gTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250962	99250962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	176	566	1	ENST00000268035.6:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000268035	NM_000875.3	89	cGa/cAa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99491879	99491879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	488	707	0	ENST00000268035.6:c.3664C>A	p.Leu1222Ile	p.L1222I	ENST00000268035	NM_000875.3	1222	Ctt/Att																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112563	2112563	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	691	857	0	ENST00000219476.3:c.1323G>A	p.Trp441Ter	p.W441*	ENST00000219476	NM_000548.3	441	tgG/tgA																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223493	2223493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	678	834	0	ENST00000326181.6:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000326181	NM_032271.2	342	Gaa/Aaa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3642782	3642782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	708	840	0	ENST00000294008.3:c.2245C>T	p.Arg749Cys	p.R749C	ENST00000294008	NM_032444.2	749	Cgc/Tgc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647857	3647857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	732	786	0	ENST00000294008.3:c.1307C>T	p.Ala436Val	p.A436V	ENST00000294008	NM_032444.2	436	gCg/gTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647906	3647906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	756	880	0	ENST00000294008.3:c.1258G>A	p.Asp420Asn	p.D420N	ENST00000294008	NM_032444.2	420	Gac/Aac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3827631	3827631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141098117		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	263	328	1	ENST00000262367.5:c.2141G>A	p.Arg714His	p.R714H	ENST00000262367	NM_004380.2	714	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3842080	3842080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	221	255	0	ENST00000262367.5:c.1232C>T	p.Ser411Phe	p.S411F	ENST00000262367	NM_004380.2	411	tCt/tTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843555	3843555	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	471	486	0	ENST00000262367.5:c.1048A>C	p.Lys350Gln	p.K350Q	ENST00000262367	NM_004380.2	350	Aaa/Caa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892299	9892299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	225	368	0	ENST00000330684.3:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000330684	NM_001134407.1	731	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031989	10031990	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	433	612	0	ENST00000330684.3:c.833_834delinsTC	p.Ser278Phe	p.S278F	ENST00000330684	NM_001134407.1	278	tCT/tTC																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032248	10032248	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	404	650	0	ENST00000330684.3:c.575A>G	p.Asp192Gly	p.D192G	ENST00000330684	NM_001134407.1	192	gAc/gGc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274190	10274190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	120	522	1	ENST00000330684.3:c.79G>A	p.Ala27Thr	p.A27T	ENST00000330684	NM_001134407.1	27	Gcg/Acg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029387	14029387	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	101	287	0	ENST00000311895.7:c.1598A>G	p.Glu533Gly	p.E533G	ENST00000311895	NM_005236.2	533	gAa/gGa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041527	14041527	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	288	361	0	ENST00000311895.7:c.2074C>T	p.Arg692Ter	p.R692*	ENST00000311895	NM_005236.2	692	Cga/Tga																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30133325	30133325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	480	552	0	ENST00000263025.4:c.173C>T	p.Ser58Leu	p.S58L	ENST00000263025	NM_002746.2	58	tCg/tTg																																																																														
CBFB	865	MSKCC	GRCh37	16	67116149	67116149	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	331	369	0	ENST00000412916.2:c.433G>T	p.Glu145Ter	p.E145*	ENST00000412916		145	Gag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68847306	68847306	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187906987		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	415	512	0	ENST00000261769.5:c.1228G>A	p.Glu410Lys	p.E410K	ENST00000261769	NM_004360.3	410	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821437	72821437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	145	648	1	ENST00000268489.5:c.10738G>A	p.Asp3580Asn	p.D3580N	ENST00000268489	NM_006885.3	3580	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822234	72822234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	605	739	0	ENST00000268489.5:c.9941G>A	p.Gly3314Asp	p.G3314D	ENST00000268489	NM_006885.3	3314	gGc/gAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828084	72828084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	579	689	1	ENST00000268489.5:c.8497G>A	p.Asp2833Asn	p.D2833N	ENST00000268489	NM_006885.3	2833	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830108	72830108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	492	584	2	ENST00000268489.5:c.6473G>A	p.Arg2158Gln	p.R2158Q	ENST00000268489	NM_006885.3	2158	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	169	384	4	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831456	72831456	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	396	553	0	ENST00000268489.5:c.5125G>T	p.Glu1709Ter	p.E1709*	ENST00000268489	NM_006885.3	1709	Gag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845496	72845496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	473	552	0	ENST00000268489.5:c.3844G>A	p.Val1282Met	p.V1282M	ENST00000268489	NM_006885.3	1282	Gtg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923723	72923723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	525	632	0	ENST00000268489.5:c.3355C>T	p.Arg1119Ter	p.R1119*	ENST00000268489	NM_006885.3	1119	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991896	72991896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	579	638	0	ENST00000268489.5:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000268489	NM_006885.3	717	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992222	72992222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	707	851	1	ENST00000268489.5:c.1823G>A	p.Ser608Asn	p.S608N	ENST00000268489	NM_006885.3	608	aGc/aAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346918	89346918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	352	473	0	ENST00000301030.4:c.6032C>T	p.Ser2011Leu	p.S2011L	ENST00000301030	NM_001256183.1	2011	tCg/tTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347980	89347980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	636	880	3	ENST00000301030.4:c.4970C>T	p.Ser1657Leu	p.S1657L	ENST00000301030	NM_001256183.1	1657	tCg/tTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348674	89348674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	593	693	0	ENST00000301030.4:c.4276G>A	p.Glu1426Lys	p.E1426K	ENST00000301030	NM_001256183.1	1426	Gaa/Aaa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350069	89350069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	735	790	0	ENST00000301030.4:c.2881C>T	p.Arg961Cys	p.R961C	ENST00000301030	NM_001256183.1	961	Cgc/Tgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350432	89350432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	596	732	0	ENST00000301030.4:c.2518C>T	p.Arg840Trp	p.R840W	ENST00000301030	NM_001256183.1	840	Cgg/Tgg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350734	89350734	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146294483		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	138	695	0	ENST00000301030.4:c.2216C>T	p.Ser739Leu	p.S739L	ENST00000301030	NM_001256183.1	739	tCg/tTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89811407	89811407	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	803	926	0	ENST00000389301.3:c.3586G>T	p.Glu1196Ter	p.E1196*	ENST00000389301	NM_000135.2	1196	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	519	584	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	298	704	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	770	942	1	ENST00000269305.4:c.388C>A	p.Leu130Ile	p.L130I	ENST00000269305	NM_001126112.2	130	Ctc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1467	67	786	0	ENST00000269305.4:c.328C>T	p.Arg110Cys	p.R110C	ENST00000269305	NM_001126112.2	110	Cgt/Tgt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7976593	7976593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	623	728	0	ENST00000319144.4:c.1799G>A	p.Arg600Gln	p.R600Q	ENST00000319144	NM_001139.2	600	cGg/cAg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979527	7979527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	521	571	1	ENST00000319144.4:c.1498G>A	p.Asp500Asn	p.D500N	ENST00000319144	NM_001139.2	500	Gat/Aat																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	119	163	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016549	12016549	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	160	214	0	ENST00000353533.5:c.686-1G>T		p.X229_splice	ENST00000353533	NM_003010.3	229																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968255	15968255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	65	294	0	ENST00000268712.3:c.5030G>T	p.Arg1677Ile	p.R1677I	ENST00000268712	NM_006311.3	1677	aGa/aTa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15978896	15978896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	375	490	0	ENST00000268712.3:c.3622G>T	p.Gly1208Cys	p.G1208C	ENST00000268712	NM_006311.3	1208	Ggc/Tgc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15989721	15989721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	256	319	0	ENST00000268712.3:c.3052C>A	p.Leu1018Ile	p.L1018I	ENST00000268712	NM_006311.3	1018	Ctc/Atc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024540	16024540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	417	510	0	ENST00000268712.3:c.1678G>A	p.Glu560Lys	p.E560K	ENST00000268712	NM_006311.3	560	Gaa/Aaa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650878	37650878	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	429	507	0	ENST00000447079.4:c.2350C>T	p.Arg784Ter	p.R784*	ENST00000447079	NM_015083.1	784	Cga/Tga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676267	37676267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	451	521	0	ENST00000447079.4:c.3022C>T	p.Arg1008Trp	p.R1008W	ENST00000447079	NM_015083.1	1008	Cgg/Tgg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40353760	40353760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	260	606	2	ENST00000293328.3:c.2360C>T	p.Ser787Leu	p.S787L	ENST00000293328	NM_012448.3	787	tCg/tTg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40368090	40368090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	550	550	0	ENST00000293328.3:c.1415G>A	p.Gly472Asp	p.G472D	ENST00000293328	NM_012448.3	472	gGc/gAc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40376808	40376808	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	181	521	0	ENST00000293328.3:c.364G>T	p.Glu122Ter	p.E122*	ENST00000293328	NM_012448.3	122	Gaa/Taa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226387	41226387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	414	535	0	ENST00000357654.3:c.4636G>A	p.Asp1546Asn	p.D1546N	ENST00000357654	NM_007294.3	1546	Gat/Aat																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56772505	56772505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	316	468	2	ENST00000337432.4:c.359C>T	p.Thr120Ile	p.T120I	ENST00000337432	NM_058216.2	120	aCa/aTa																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56801452	56801452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	168	324	0	ENST00000337432.4:c.956G>A	p.Arg319Gln	p.R319Q	ENST00000337432	NM_058216.2	319	cGa/cAa																																																																														
CD79B	974	MSKCC	GRCh37	17	62007527	62007527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	627	757	0	ENST00000392795.3:c.340C>T	p.Arg114Trp	p.R114W	ENST00000392795	NM_001039933.1	114	Cgg/Tgg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63545699	63545699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	45	528	1	ENST00000307078.5:c.895G>A	p.Asp299Asn	p.D299N	ENST00000307078	NM_004655.3	299	Gac/Aac																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66522024	66522024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	177	204	0	ENST00000358598.2:c.679G>A	p.Asp227Asn	p.D227N	ENST00000358598	NM_212471.2	227	Gac/Aac																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73775165	73775165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1341	159	738	0	ENST00000254810.4:c.91C>T	p.Pro31Ser	p.P31S	ENST00000254810	NM_005324.3	31	Ccc/Tcc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78599548	78599548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	399	492	0	ENST00000306801.3:c.220G>A	p.Asp74Asn	p.D74N	ENST00000306801	NM_020761.2	74	Gat/Aat																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78681707	78681707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	469	584	0	ENST00000306801.3:c.415C>T	p.Arg139Cys	p.R139C	ENST00000306801	NM_020761.2	139	Cgc/Tgc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796945	78796945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	397	556	1	ENST00000306801.3:c.1058C>T	p.Ala353Val	p.A353V	ENST00000306801	NM_020761.2	353	gCg/gTg																																																																														
YES1	7525	MSKCC	GRCh37	18	751726	751726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	190	324	0	ENST00000314574.4:c.350G>T	p.Arg117Ile	p.R117I	ENST00000314574	NM_005433.3	117	aGa/aTa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39609317	39609317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	182	230	0	ENST00000262039.4:c.1619C>A	p.Ser540Tyr	p.S540Y	ENST00000262039	NM_002647.2	540	tCt/tAt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45396936	45396936	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	161	283	0	ENST00000262160.6:c.237-1G>A		p.X79_splice	ENST00000262160	NM_005901.5	79																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45422958	45422958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	76	321	0	ENST00000262160.6:c.170G>A	p.Arg57Gln	p.R57Q	ENST00000262160	NM_005901.5	57	cGa/cAa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56401614	56401614	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	26	300	2	ENST00000348428.3:c.1475+1G>A		p.X492_splice	ENST00000348428	NM_006785.3	492																																																																															
MALT1	10892	MSKCC	GRCh37	18	56414715	56414715	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	323	507	0	ENST00000348428.3:c.2116A>C	p.Asn706His	p.N706H	ENST00000348428	NM_006785.3	706	Aat/Cat																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615791	1615791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	563	799	3	ENST00000344749.5:c.1480G>A	p.Ala494Thr	p.A494T	ENST00000344749	NM_001136139.2	494	Gcc/Acc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2202775	2202775	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	518	605	0	ENST00000398665.3:c.784G>T	p.Glu262Ter	p.E262*	ENST00000398665	NM_032482.2	262	Gaa/Taa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2213597	2213597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	592	830	1	ENST00000398665.3:c.1617G>T	p.Gln539His	p.Q539H	ENST00000398665	NM_032482.2	539	caG/caT																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216455	2216455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1444	96	879	0	ENST00000398665.3:c.2099C>T	p.Ser700Leu	p.S700L	ENST00000398665	NM_032482.2	700	tCg/tTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226268	2226268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1511	349	1095	1	ENST00000398665.3:c.3748G>A	p.Asp1250Asn	p.D1250N	ENST00000398665	NM_032482.2	1250	Gac/Aac																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226674	2226674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	687	934	1	ENST00000398665.3:c.4154G>A	p.Arg1385His	p.R1385H	ENST00000398665	NM_032482.2	1385	cGc/cAc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3113442	3113442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	595	692	4	ENST00000078429.4:c.436G>A	p.Asp146Asn	p.D146N	ENST00000078429	NM_002067.2	146	Gac/Aac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5206839	5206839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	492	702	0	ENST00000357368.4:c.5793C>A	p.Phe1931Leu	p.F1931L	ENST00000357368	NM_002850.3	1931	ttC/ttA																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208335	5208335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148478353		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	599	727	1	ENST00000357368.4:c.5555C>T	p.Ser1852Leu	p.S1852L	ENST00000357368	NM_002850.3	1852	tCg/tTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210506	5210506	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	180	621	1	ENST00000357368.4:c.5461C>T	p.Arg1821Ter	p.R1821*	ENST00000357368	NM_002850.3	1821	Cga/Tga																																																																														
INSR	3643	MSKCC	GRCh37	19	7172315	7172315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	299	371	0	ENST00000302850.5:c.1254G>T	p.Glu418Asp	p.E418D	ENST00000302850	NM_000208.2	418	gaG/gaT																																																																														
INSR	3643	MSKCC	GRCh37	19	7267389	7267389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	126	454	0	ENST00000302850.5:c.619G>A	p.Glu207Lys	p.E207K	ENST00000302850	NM_000208.2	207	Gaa/Aaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602425	10602425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	877	1008	1	ENST00000171111.5:c.1153G>A	p.Asp385Asn	p.D385N	ENST00000171111	NM_203500.1	385	Gac/Aac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602796	10602796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	849	886	0	ENST00000171111.5:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000171111	NM_203500.1	261	cGg/cAg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610292	10610292	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201447398		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1451	333	873	3	ENST00000171111.5:c.418G>A	p.Ala140Thr	p.A140T	ENST00000171111	NM_203500.1	140	Gcc/Acc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11018786	11018786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	855	854	2	ENST00000327064.4:c.418C>T	p.Arg140Trp	p.R140W	ENST00000327064	NM_199141.1	140	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136115	11136115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	195	649	0	ENST00000344626.4:c.3099G>T	p.Lys1033Asn	p.K1033N	ENST00000344626	NM_003072.3	1033	aaG/aaT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152118	11152118	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	483	558	1	ENST00000344626.4:c.4306G>T	p.Glu1436Ter	p.E1436*	ENST00000344626	NM_003072.3	1436	Gag/Tag																																																																														
CALR	811	MSKCC	GRCh37	19	13050870	13050870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	285	379	0	ENST00000316448.5:c.401C>T	p.Pro134Leu	p.P134L	ENST00000316448	NM_004343.3	134	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302801	15302801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	729	903	2	ENST00000263388.2:c.649G>A	p.Asp217Asn	p.D217N	ENST00000263388	NM_000435.2	217	Gac/Aac																																																																														
CCNE1	898	MSKCC	GRCh37	19	30311638	30311638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	58	307	1	ENST00000262643.3:c.492G>T	p.Glu164Asp	p.E164D	ENST00000262643	NM_001238.2	164	gaG/gaT																																																																														
CCNE1	898	MSKCC	GRCh37	19	30314574	30314574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	425	602	0	ENST00000262643.3:c.1123G>A	p.Ala375Thr	p.A375T	ENST00000262643	NM_001238.2	375	Gca/Aca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212371	36212371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	732	869	1	ENST00000222270.7:c.2122G>A	p.Ala708Thr	p.A708T	ENST00000222270	NM_014727.1	708	Gcc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228564	36228564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	673	732	0	ENST00000222270.7:c.7578C>A	p.Phe2526Leu	p.F2526L	ENST00000222270	NM_014727.1	2526	ttC/ttA																																																																														
AXL	558	MSKCC	GRCh37	19	41744405	41744405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	629	860	1	ENST00000301178.4:c.1025C>T	p.Ala342Val	p.A342V	ENST00000301178	NM_021913.4	342	gCt/gTt																																																																														
AXL	558	MSKCC	GRCh37	19	41754460	41754460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	587	749	1	ENST00000301178.4:c.1579C>T	p.Arg527Trp	p.R527W	ENST00000301178	NM_021913.4	527	Cgg/Tgg																																																																														
AXL	558	MSKCC	GRCh37	19	41765694	41765694	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61737385		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	543	661	0	ENST00000301178.4:c.2570C>T	p.Ala857Val	p.A857V	ENST00000301178	NM_021913.4	857	gCg/gTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867304	45867304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1476	290	978	1	ENST00000391945.4:c.889G>A	p.Ala297Thr	p.A297T	ENST00000391945	NM_000400.3	297	Gcc/Acc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867575	45867575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1546	173	1024	0	ENST00000391945.4:c.733G>A	p.Asp245Asn	p.D245N	ENST00000391945	NM_000400.3	245	Gac/Aac																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714555	52714555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	590	742	0	ENST00000322088.6:c.313C>T	p.Arg105Trp	p.R105W	ENST00000322088	NM_014225.5	105	Cgg/Tgg																																																																														
CENPA	1058	MSKCC	GRCh37	2	27015001	27015001	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs141275453		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	300	308	0	ENST00000335756.4:c.103G>A	p.Ala35Thr	p.A35T	ENST00000335756	NM_001809.3	35	Gct/Act																																																																														
ALK	238	MSKCC	GRCh37	2	29432704	29432704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	88	593	0	ENST00000389048.3:c.3784C>T	p.Pro1262Ser	p.P1262S	ENST00000389048	NM_004304.4	1262	Cct/Tct																																																																														
ALK	238	MSKCC	GRCh37	2	29445257	29445257	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	167	641	0	ENST00000389048.3:c.3468C>A	p.Cys1156Ter	p.C1156*	ENST00000389048	NM_004304.4	1156	tgC/tgA																																																																														
SOS1	6654	MSKCC	GRCh37	2	39214639	39214639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	64	454	0	ENST00000402219.2:c.3485C>T	p.Ala1162Val	p.A1162V	ENST00000402219	NM_005633.3	1162	gCc/gTc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39240688	39240688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	51	328	1	ENST00000402219.2:c.2080C>T	p.Arg694Trp	p.R694W	ENST00000402219	NM_005633.3	694	Cgg/Tgg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46583923	46583923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	331	360	0	ENST00000263734.3:c.430C>A	p.Arg144Ser	p.R144S	ENST00000263734	NM_001430.4	144	Cgt/Agt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47657021	47657021	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146567853		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	214	289	0	ENST00000233146.2:c.1217G>A	p.Arg406Gln	p.R406Q	ENST00000233146	NM_000251.2	406	cGa/cAa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702340	47702340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	204	315	0	ENST00000233146.2:c.1936G>T	p.Asp646Tyr	p.D646Y	ENST00000233146	NM_000251.2	646	Gat/Tat																																																																														
MSH6	2956	MSKCC	GRCh37	2	48025824	48025824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	88	205	0	ENST00000234420.5:c.702G>T	p.Lys234Asn	p.K234N	ENST00000234420	NM_000179.2	234	aaG/aaT																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026606	48026606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	249	323	0	ENST00000234420.5:c.1484G>A	p.Arg495Gln	p.R495Q	ENST00000234420	NM_000179.2	495	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033753	48033753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	140	256	0	ENST00000234420.5:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000234420	NM_000179.2	1322	Gaa/Taa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99189293	99189293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	360	421	0	ENST00000074304.5:c.2549G>A	p.Arg850His	p.R850H	ENST00000074304	NM_001134224.1	850	cGc/cAc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99203982	99203982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	204	329	0	ENST00000074304.5:c.2845C>T	p.Arg949Cys	p.R949C	ENST00000074304	NM_001134224.1	949	Cgc/Tgc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038195	128038195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	336	443	0	ENST00000285398.2:c.1355G>A	p.Arg452Gln	p.R452Q	ENST00000285398	NM_000122.1	452	cGa/cAa																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873098	136873098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	314	392	0	ENST00000241393.3:c.400C>T	p.Arg134Cys	p.R134C	ENST00000241393	NM_003467.2	134	Cgc/Tgc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873483	136873483	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	200	275	0	ENST00000241393.3:c.16-1G>A		p.X6_splice	ENST00000241393	NM_003467.2	6																																																																															
ACVR1	90	MSKCC	GRCh37	2	158622495	158622495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	275	413	0	ENST00000263640.3:c.1004G>A	p.Arg335Gln	p.R335Q	ENST00000263640	NM_001105.4	335	cGa/cAa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190670436	190670436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	74	350	1	ENST00000441310.2:c.374G>A	p.Gly125Asp	p.G125D	ENST00000441310	NM_000534.4	125	gGc/gAc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265106	198265106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	308	342	1	ENST00000335508.6:c.2771G>A	p.Arg924Gln	p.R924Q	ENST00000335508	NM_012433.2	924	cGa/cAa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273249	198273249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	393	467	0	ENST00000335508.6:c.961G>A	p.Asp321Asn	p.D321N	ENST00000335508	NM_012433.2	321	Gat/Aat																																																																														
CASP8	841	MSKCC	GRCh37	2	202131301	202131301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	272	380	0	ENST00000358485.4:c.269C>T	p.Pro90Leu	p.P90L	ENST00000358485	NM_001080125.1	90	cCg/cTg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	184	231	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288934	212288934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	46	362	0	ENST00000342788.4:c.2812C>T	p.Arg938Cys	p.R938C	ENST00000342788	NM_005235.2	938	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812236	212812236	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	179	237	0	ENST00000342788.4:c.340C>T	p.Arg114Ter	p.R114*	ENST00000342788	NM_005235.2	114	Cga/Tga																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368379	225368379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	186	270	0	ENST00000264414.4:c.1367C>A	p.Ser456Tyr	p.S456Y	ENST00000264414	NM_003590.4	456	tCt/tAt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225370789	225370789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	228	343	0	ENST00000264414.4:c.1090C>T	p.Arg364Cys	p.R364C	ENST00000264414	NM_003590.4	364	Cgt/Tgt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225378351	225378351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	126	166	2	ENST00000264414.4:c.544G>A	p.Ala182Thr	p.A182T	ENST00000264414	NM_003590.4	182	Gca/Aca																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660408	227660408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	438	695	0	ENST00000305123.5:c.3047G>A	p.Arg1016Gln	p.R1016Q	ENST00000305123	NM_005544.2	1016	cGa/cAa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662433	227662433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	567	758	0	ENST00000305123.5:c.1022C>T	p.Ser341Leu	p.S341L	ENST00000305123	NM_005544.2	341	tCg/tTg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663328	227663328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	522	591	1	ENST00000305123.5:c.127C>T	p.Arg43Cys	p.R43C	ENST00000305123	NM_005544.2	43	Cgc/Tgc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795004	242795004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1529	133	995	0	ENST00000334409.5:c.205C>T	p.Arg69Cys	p.R69C	ENST00000334409	NM_005018.2	69	Cgc/Tgc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024390	31024390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	482	788	1	ENST00000375687.4:c.3875G>A	p.Gly1292Asp	p.G1292D	ENST00000375687	NM_015338.5	1292	gGt/gAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730916	40730916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	461	570	2	ENST00000373198.4:c.3619C>T	p.Arg1207Cys	p.R1207C	ENST00000373198	NM_133170.3	1207	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747137	40747137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	327	466	0	ENST00000373198.4:c.2945C>T	p.Pro982Leu	p.P982L	ENST00000373198	NM_133170.3	982	cCg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306602	41306602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	483	661	0	ENST00000373198.4:c.1057G>A	p.Asp353Asn	p.D353N	ENST00000373198	NM_133170.3	353	Gat/Aat																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264104	46264104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	213	280	0	ENST00000371998.3:c.1151G>A	p.Gly384Glu	p.G384E	ENST00000371998		384	gGa/gAa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46266401	46266401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	112	240	0	ENST00000371998.3:c.2386G>A	p.Asp796Asn	p.D796N	ENST00000371998		796	Gac/Aac																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268783	46268783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	380	497	1	ENST00000371998.3:c.3068G>A	p.Gly1023Asp	p.G1023D	ENST00000371998		1023	gGc/gAc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46271069	46271069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	77	387	1	ENST00000371998.3:c.3193G>A	p.Asp1065Asn	p.D1065N	ENST00000371998		1065	Gat/Aat																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62297363	62297363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	408	459	0	ENST00000508582.2:c.617G>A	p.Ser206Asn	p.S206N	ENST00000508582		206	aGc/aAc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326726	62326726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	849	1005	0	ENST00000508582.2:c.3617C>T	p.Ser1206Leu	p.S1206L	ENST00000508582		1206	tCg/tTg																																																																														
NF2	4771	MSKCC	GRCh37	22	30035126	30035126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	310	424	0	ENST00000338641.4:c.288C>A	p.Phe96Leu	p.F96L	ENST00000338641	NM_000268.3	96	ttC/ttA																																																																														
NF2	4771	MSKCC	GRCh37	22	30051605	30051605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	208	316	0	ENST00000338641.4:c.539C>A	p.Thr180Asn	p.T180N	ENST00000338641	NM_000268.3	180	aCt/aAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125437	47125437	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	270	360	0	ENST00000409792.3:c.5833G>T	p.Glu1945Ter	p.E1945*	ENST00000409792	NM_014159.6	1945	Gaa/Taa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436312	52436312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	563	729	0	ENST00000460680.1:c.2182C>T	p.Arg728Cys	p.R728C	ENST00000460680	NM_004656.3	728	Cgc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643668	52643668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	337	383	0	ENST00000394830.3:c.2228C>A	p.Ser743Tyr	p.S743Y	ENST00000394830	NM_018313.4	743	tCt/tAt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651334	52651334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	328	413	0	ENST00000394830.3:c.1762G>A	p.Glu588Lys	p.E588K	ENST00000394830	NM_018313.4	588	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651496	52651496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	334	405	1	ENST00000394830.3:c.1600C>T	p.Arg534Ter	p.R534*	ENST00000394830	NM_018313.4	534	Cga/Tga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678727	52678727	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	247	319	0	ENST00000394830.3:c.892C>T	p.Arg298Ter	p.R298*	ENST00000394830	NM_018313.4	298	Cga/Tga																																																																														
MITF	4286	MSKCC	GRCh37	3	69990481	69990481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201247895		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	70	271	0	ENST00000352241.4:c.761C>T	p.Thr254Met	p.T254M	ENST00000352241	NM_198159.2	254	aCg/aTg																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114584	73114584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	129	197	0	ENST00000356692.5:c.965G>A	p.Arg322Lys	p.R322K	ENST00000356692		322	aGa/aAa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138383915	138383915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	295	368	0	ENST00000289153.2:c.2635G>T	p.Asp879Tyr	p.D879Y	ENST00000289153	NM_006219.2	879	Gat/Tat																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	176	248	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138478041	138478041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	83	332	0	ENST00000289153.2:c.145G>A	p.Glu49Lys	p.E49K	ENST00000289153	NM_006219.2	49	Gaa/Aaa																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664546	138664546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	50	277	0	ENST00000330315.3:c.1019C>T	p.Ala340Val	p.A340V	ENST00000330315	NM_023067.3	340	gCg/gTg																																																																														
ATR	545	MSKCC	GRCh37	3	142176456	142176456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	172	231	1	ENST00000350721.4:c.7645C>T	p.Pro2549Ser	p.P2549S	ENST00000350721	NM_001184.3	2549	Cct/Tct																																																																														
TP63	8626	MSKCC	GRCh37	3	189587145	189587145	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	230	340	0	ENST00000264731.3:c.1162A>G	p.Thr388Ala	p.T388A	ENST00000264731	NM_003722.4	388	Aca/Gca																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801497	1801497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	751	949	0	ENST00000260795.2:c.403G>A	p.Glu135Lys	p.E135K	ENST00000260795		135	Gaa/Aaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803630	1803630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	725	865	1	ENST00000260795.2:c.808G>A	p.Asp270Asn	p.D270N	ENST00000260795		270	Gac/Aac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808870	1808870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	756	977	2	ENST00000260795.2:c.2302G>A	p.Glu768Lys	p.E768K	ENST00000260795		768	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808942	1808942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1478	87	882	2	ENST00000260795.2:c.2374G>A	p.Asp792Asn	p.D792N	ENST00000260795		792	Gac/Aac																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902622	1902622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	556	644	0	ENST00000382891.5:c.241G>A	p.Asp81Asn	p.D81N	ENST00000382891	NM_133335.3	81	Gat/Aat																																																																														
WHSC1	0	MSKCC	GRCh37	4	1955099	1955099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	505	670	1	ENST00000382891.5:c.2186G>A	p.Arg729His	p.R729H	ENST00000382891	NM_133335.3	729	cGc/cAc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1959714	1959714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	66	270	0	ENST00000382891.5:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000382891	NM_133335.3	979	cGa/cAa																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748309	41748309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	741	834	0	ENST00000226382.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000226382	NM_003924.3	154	Cgc/Tgc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155180	55155180	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267600187		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	340	489	0	ENST00000257290.5:c.2779G>A	p.Glu927Lys	p.E927K	ENST00000257290	NM_006206.4	927	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55971073	55971073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	324	453	0	ENST00000263923.4:c.1724G>T	p.Arg575Ile	p.R575I	ENST00000263923	NM_002253.2	575	aGa/aTa																																																																														
TET2	54790	MSKCC	GRCh37	4	106156457	106156457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	237	283	0	ENST00000380013.4:c.1358G>A	p.Gly453Asp	p.G453D	ENST00000380013	NM_001127208.2	453	gGt/gAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106193781	106193781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	31	231	0	ENST00000380013.4:c.4243C>T	p.Leu1415Phe	p.L1415F	ENST00000380013	NM_001127208.2	1415	Ctt/Ttt																																																																														
TET2	54790	MSKCC	GRCh37	4	106197025	106197025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	175	246	0	ENST00000380013.4:c.5358G>T	p.Glu1786Asp	p.E1786D	ENST00000380013	NM_001127208.2	1786	gaG/gaT																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143033717	143033717	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	179	283	0	ENST00000262992.4:c.2254G>T	p.Glu752Ter	p.E752*	ENST00000262992	NM_001101669.1	752	Gaa/Taa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143191833	143191833	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	297	396	0	ENST00000262992.4:c.598G>T	p.Asp200Tyr	p.D200Y	ENST00000262992	NM_001101669.1	200	Gat/Tat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258998	153258998	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	109	201	0	ENST00000281708.4:c.817G>T	p.Glu273Ter	p.E273*	ENST00000281708	NM_033632.3	273	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332466	153332466	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	207	268	0	ENST00000281708.4:c.490A>C	p.Lys164Gln	p.K164Q	ENST00000281708	NM_033632.3	164	Aaa/Caa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535417	187535417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	204	442	1	ENST00000441802.2:c.9157C>T	p.Arg3053Cys	p.R3053C	ENST00000441802	NM_005245.3	3053	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	264	321	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540958	187540958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189912205		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	228	304	1	ENST00000441802.2:c.6782C>T	p.Thr2261Met	p.T2261M	ENST00000441802	NM_005245.3	2261	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541765	187541765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	273	393	1	ENST00000441802.2:c.5975C>A	p.Ser1992Tyr	p.S1992Y	ENST00000441802	NM_005245.3	1992	tCc/tAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549725	187549725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199516712		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	201	338	0	ENST00000441802.2:c.4516C>T	p.Arg1506Cys	p.R1506C	ENST00000441802	NM_005245.3	1506	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629648	187629648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	197	538	1	ENST00000441802.2:c.1334C>T	p.Ala445Val	p.A445V	ENST00000441802	NM_005245.3	445	gCg/gTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31423029	31423029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	238	358	0	ENST00000344624.3:c.3284G>A	p.Arg1095Gln	p.R1095Q	ENST00000344624		1095	cGa/cAa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31493364	31493364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	176	270	0	ENST00000344624.3:c.1792G>A	p.Glu598Lys	p.E598K	ENST00000344624		598	Gag/Aag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38963006	38963006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	111	212	0	ENST00000357387.3:c.1538G>A	p.Arg513Gln	p.R513Q	ENST00000357387	NM_152756.3	513	cGa/cAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178394	56178394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	51	269	1	ENST00000399503.3:c.3367G>A	p.Asp1123Asn	p.D1123N	ENST00000399503	NM_005921.1	1123	Gat/Aat																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754240	57754240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	79	308	0	ENST00000274289.3:c.611G>T	p.Arg204Ile	p.R204I	ENST00000274289	NM_006622.3	204	aGa/aTa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86637111	86637111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	31	243	0	ENST00000274376.6:c.1022G>A	p.Arg341Gln	p.R341Q	ENST00000274376	NM_002890.2	341	cGg/cAg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86676375	86676375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	95	160	0	ENST00000274376.6:c.2653T>C	p.Trp885Arg	p.W885R	ENST00000274376	NM_002890.2	885	Tgg/Cgg																																																																														
APC	324	MSKCC	GRCh37	5	112154970	112154970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	110	601	0	ENST00000257430.4:c.1241G>A	p.Arg414His	p.R414H	ENST00000257430	NM_000038.5	414	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112170825	112170825	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	42	469	0	ENST00000257430.4:c.1921A>G	p.Asn641Asp	p.N641D	ENST00000257430	NM_000038.5	641	Aat/Gat																																																																														
RAD50	10111	MSKCC	GRCh37	5	131940521	131940521	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181961360		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	188	253	0	ENST00000265335.6:c.2548C>T	p.Arg850Cys	p.R850C	ENST00000265335		850	Cgt/Tgt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131972883	131972883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	71	214	0	ENST00000265335.6:c.3466C>T	p.Arg1156Cys	p.R1156C	ENST00000265335		1156	Cgt/Tgt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631256	176631256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	239	297	0	ENST00000439151.2:c.1199G>A	p.Arg400Lys	p.R400K	ENST00000439151	NM_022455.4	400	aGa/aAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038418	180038418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	719	900	0	ENST00000261937.6:c.3599C>T	p.Ser1200Leu	p.S1200L	ENST00000261937	NM_182925.4	1200	tCg/tTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048655	180048655	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	643	873	0	ENST00000261937.6:c.1907T>A	p.Leu636His	p.L636H	ENST00000261937	NM_182925.4	636	cTc/cAc																																																																														
IRF4	3662	MSKCC	GRCh37	6	401655	401655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201105575		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	414	573	0	ENST00000380956.4:c.977C>T	p.Ala326Val	p.A326V	ENST00000380956	NM_001195286.1	326	gCg/gTg																																																																														
IRF4	3662	MSKCC	GRCh37	6	401693	401693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	410	594	0	ENST00000380956.4:c.1015C>T	p.Pro339Ser	p.P339S	ENST00000380956	NM_001195286.1	339	Ccc/Tcc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20486949	20486949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188266138		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	165	246	1	ENST00000346618.3:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000346618	NM_001949.4	305	cGa/cAa																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858167	27858167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	315	397	0	ENST00000359303.2:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000359303	NM_003535.2	135	cGa/cAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32189064	32189064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	498	639	0	ENST00000375023.3:c.490C>T	p.Pro164Ser	p.P164S	ENST00000375023	NM_004557.3	164	Cca/Tca																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798543	32798543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	585	677	0	ENST00000374899.4:c.1313G>A	p.Gly438Glu	p.G438E	ENST00000374899	NM_018833.2	438	gGa/gAa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288942	33288942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	389	473	0	ENST00000374542.5:c.610C>T	p.Arg204Trp	p.R204W	ENST00000374542	NM_001141970.1	204	Cgg/Tgg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553111	106553111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	481	585	1	ENST00000369096.4:c.1076C>T	p.Thr359Met	p.T359M	ENST00000369096	NM_001198.3	359	aCg/aTg																																																																														
FYN	2534	MSKCC	GRCh37	6	112020771	112020771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	132	344	0	ENST00000368678.4:c.800C>T	p.Ser267Leu	p.S267L	ENST00000368678		267	tCg/tTg																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137527318	137527318	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	278	490	1	ENST00000367739.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000367739	NM_000416.2	110	Gaa/Taa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099344	157099344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	289	339	0	ENST00000346085.5:c.281A>G	p.His94Arg	p.H94R	ENST00000346085	NM_020732.3	94	cAc/cGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157406006	157406006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	363	432	0	ENST00000346085.5:c.2248C>T	p.Arg750Ter	p.R750*	ENST00000346085	NM_020732.3	750	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517445	157517445	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	340	390	0	ENST00000346085.5:c.4009C>T	p.Arg1337Ter	p.R1337*	ENST00000346085	NM_020732.3	1337	Cga/Tga																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026643	6026643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	799	947	1	ENST00000265849.7:c.1753C>A	p.Leu585Ile	p.L585I	ENST00000265849	NM_000535.5	585	Ctt/Att																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441565	6441565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	68	107	0	ENST00000356142.4:c.412C>A	p.Leu138Ile	p.L138I	ENST00000356142	NM_018890.3	138	Ctt/Att																																																																														
ETV1	2115	MSKCC	GRCh37	7	13940381	13940381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	191	268	0	ENST00000405192.2:c.1125G>T	p.Glu375Asp	p.E375D	ENST00000405192	NM_001163147.1	375	gaG/gaT																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946170	13946170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	310	506	1	ENST00000405192.2:c.926G>A	p.Arg309Gln	p.R309Q	ENST00000405192	NM_001163147.1	309	cGa/cAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50358686	50358686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	136	212	0	ENST00000331340.3:c.29C>T	p.Ser10Phe	p.S10F	ENST00000331340	NM_006060.4	10	tCc/tTc																																																																														
CDK6	1021	MSKCC	GRCh37	7	92244500	92244500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	265	371	0	ENST00000265734.4:c.935C>T	p.Ser312Phe	p.S312F	ENST00000265734	NM_001259.6	312	tCc/tTc																																																																														
MET	4233	MSKCC	GRCh37	7	116395569	116395569	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	207	333	0	ENST00000397752.3:c.1862C>T	p.Thr621Ile	p.T621I	ENST00000397752	NM_000245.2	621	aCa/aTa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148544317	148544317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	360	448	1	ENST00000320356.2:c.74G>A	p.Arg25Gln	p.R25Q	ENST00000320356	NM_004456.4	25	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151841854	151841854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	62	310	1	ENST00000262189.6:c.14287C>T	p.Arg4763Trp	p.R4763W	ENST00000262189	NM_170606.2	4763	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151842335	151842335	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	215	274	0	ENST00000262189.6:c.14077C>T	p.Arg4693Ter	p.R4693*	ENST00000262189	NM_170606.2	4693	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151853013	151853013	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	193	264	0	ENST00000262189.6:c.11942A>G	p.Asn3981Ser	p.N3981S	ENST00000262189	NM_170606.2	3981	aAc/aGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878862	151878862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	145	471	0	ENST00000262189.6:c.6083G>A	p.Arg2028Gln	p.R2028Q	ENST00000262189	NM_170606.2	2028	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884448	151884448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	245	290	0	ENST00000262189.6:c.4907C>T	p.Thr1636Met	p.T1636M	ENST00000262189	NM_170606.2	1636	aCg/aTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38173552	38173552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	286	374	0	ENST00000317025.8:c.1864G>A	p.Glu622Lys	p.E622K	ENST00000317025	NM_023034.1	622	Gag/Aag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187135	38187135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	645	688	0	ENST00000317025.8:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000317025	NM_023034.1	448	Cgg/Tgg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275801	38275801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	511	614	0	ENST00000425967.3:c.1468G>A	p.Gly490Arg	p.G490R	ENST00000425967	NM_001174067.1	490	Ggg/Agg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287397	38287397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145315779		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	569	709	0	ENST00000425967.3:c.260G>A	p.Arg87His	p.R87H	ENST00000425967	NM_001174067.1	87	cGc/cAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129915	69129915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	309	389	1	ENST00000288368.4:c.4669C>T	p.Arg1557Cys	p.R1557C	ENST00000288368	NM_024870.2	1557	Cgt/Tgt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970907	70970907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	368	472	1	ENST00000276594.2:c.1354C>A	p.Leu452Ile	p.L452I	ENST00000276594	NM_024504.3	452	Ctt/Att																																																																														
AGO2	27161	MSKCC	GRCh37	8	141551357	141551357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	796	897	1	ENST00000220592.5:c.1940G>A	p.Arg647His	p.R647H	ENST00000220592	NM_012154.3	647	cGc/cAc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566300	141566300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	216	427	0	ENST00000220592.5:c.1112C>T	p.Ser371Leu	p.S371L	ENST00000220592	NM_012154.3	371	tCg/tTg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738143	145738143	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	794	926	0	ENST00000428558.2:c.2767T>G	p.Leu923Val	p.L923V	ENST00000428558	NM_004260.3	923	Ttg/Gtg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741829	145741829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	648	891	0	ENST00000428558.2:c.674C>T	p.Ser225Leu	p.S225L	ENST00000428558	NM_004260.3	225	tCg/tTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069023	5069023	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	14	177	0	ENST00000381652.3:c.1328G>A	p.Arg443Gln	p.R443Q	ENST00000381652	NM_004972.3	443	cGa/cAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072541	5072541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	154	274	0	ENST00000381652.3:c.1691G>A	p.Arg564Gln	p.R564Q	ENST00000381652	NM_004972.3	564	cGa/cAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078388	5078388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	183	319	0	ENST00000381652.3:c.2075C>A	p.Pro692His	p.P692H	ENST00000381652	NM_004972.3	692	cCt/cAt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090807	5090807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	44	196	0	ENST00000381652.3:c.2955G>T	p.Glu985Asp	p.E985D	ENST00000381652	NM_004972.3	985	gaG/gaT																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126343	5126343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41316003		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	103	230	0	ENST00000381652.3:c.3188G>A	p.Arg1063His	p.R1063H	ENST00000381652	NM_004972.3	1063	cGt/cAt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126757	5126757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	41	336	1	ENST00000381652.3:c.3365G>A	p.Arg1122Gln	p.R1122Q	ENST00000381652	NM_004972.3	1122	cGa/cAa																																																																														
CD274	29126	MSKCC	GRCh37	9	5457399	5457399	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	125	153	0	ENST00000381577.3:c.373C>T	p.Arg125Ter	p.R125*	ENST00000381577	NM_014143.3	125	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465510	8465510	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	297	439	0	ENST00000356435.5:c.3670G>T	p.Glu1224Ter	p.E1224*	ENST00000356435		1224	Gaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521486	8521486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	420	513	0	ENST00000356435.5:c.752G>A	p.Gly251Glu	p.G251E	ENST00000356435		251	gGa/gAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27158023	27158023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	407	536	0	ENST00000380036.4:c.247G>A	p.Ala83Thr	p.A83T	ENST00000380036	NM_000459.3	83	Gct/Act																																																																														
TEK	7010	MSKCC	GRCh37	9	27190581	27190581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	49	513	0	ENST00000380036.4:c.1382C>T	p.Ala461Val	p.A461V	ENST00000380036	NM_000459.3	461	gCt/gTt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342656	87342656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	283	489	1	ENST00000277120.3:c.941C>T	p.Ala314Val	p.A314V	ENST00000277120		314	gCg/gTg																																																																														
SYK	6850	MSKCC	GRCh37	9	93624564	93624564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	355	524	0	ENST00000375746.1:c.655G>A	p.Asp219Asn	p.D219N	ENST00000375746	NM_001174167.1	219	Gac/Aac																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209490	98209490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140417636		P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	593	849	0	ENST00000331920.6:c.4048C>T	p.Arg1350Trp	p.R1350W	ENST00000331920	NM_000264.3	1350	Cgg/Tgg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220519	98220519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	385	483	1	ENST00000331920.6:c.2944C>T	p.Arg982Trp	p.R982W	ENST00000331920	NM_000264.3	982	Cgg/Tgg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98241428	98241428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	314	361	0	ENST00000331920.6:c.1069G>A	p.Ala357Thr	p.A357T	ENST00000331920	NM_000264.3	357	Gcc/Acc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249413	110249413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	928	1078	1	ENST00000374672.4:c.1160C>T	p.Ser387Leu	p.S387L	ENST00000374672	NM_004235.4	387	tCg/tTg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128201272	128201272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	421	541	0	ENST00000265960.3:c.1463C>T	p.Ser488Leu	p.S488L	ENST00000265960	NM_001006617.1	488	tCg/tTg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128347931	128347931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	665	833	0	ENST00000265960.3:c.574C>T	p.Pro192Ser	p.P192S	ENST00000265960	NM_001006617.1	192	Cca/Tca																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772663	135772663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	374	470	0	ENST00000298552.3:c.2883G>T	p.Glu961Asp	p.E961D	ENST00000298552	NM_001162426.1	961	gaG/gaT																																																																														
RXRA	6256	MSKCC	GRCh37	9	137309018	137309018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	738	851	1	ENST00000481739.1:c.625C>T	p.Arg209Trp	p.R209W	ENST00000481739	NM_002957.4	209	Cgg/Tgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396824	139396824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	713	721	2	ENST00000277541.6:c.5284C>T	p.Arg1762Trp	p.R1762W	ENST00000277541	NM_017617.3	1762	Cgg/Tgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404360	139404360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	868	943	0	ENST00000277541.6:c.2794G>A	p.Asp932Asn	p.D932N	ENST00000277541	NM_017617.3	932	Gac/Aac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409801	139409801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	770	928	0	ENST00000277541.6:c.1955C>T	p.Ser652Leu	p.S652L	ENST00000277541	NM_017617.3	652	tCg/tTg																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564084	139564084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1489	180	854	0	ENST00000308874.7:c.224G>A	p.Arg75His	p.R75H	ENST00000308874		75	cGc/cAc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321297	1321297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	401	523	1	ENST00000381566.1:c.458G>A	p.Arg153Gln	p.R153Q	ENST00000381566		153	cGg/cAg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922974	44922974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	408	525	1	ENST00000377967.4:c.1835G>A	p.Arg612Gln	p.R612Q	ENST00000377967	NM_021140.2	612	cGa/cAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969346	44969346	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	198	343	0	ENST00000377967.4:c.4028T>G	p.Phe1343Cys	p.F1343C	ENST00000377967	NM_021140.2	1343	tTt/tGt																																																																														
ARAF	369	MSKCC	GRCh37	X	47428125	47428125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	600	740	0	ENST00000377045.4:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000377045	NM_001654.4	362	cGa/cAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227949	53227949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1331	81	777	1	ENST00000375401.3:c.2365C>T	p.Arg789Cys	p.R789C	ENST00000375401	NM_004187.3	789	Cgc/Tgc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53230752	53230752	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	515	643	1	ENST00000375401.3:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000375401	NM_004187.3	681	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70339575	70339575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	450	492	1	ENST00000374080.3:c.244C>T	p.Arg82Cys	p.R82C	ENST00000374080		82	Cgt/Tgt																																																																														
MED12	9968	MSKCC	GRCh37	X	70344077	70344077	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	623	767	1	ENST00000374080.3:c.1813C>T	p.Arg605Ter	p.R605*	ENST00000374080		605	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70347793	70347793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	388	487	2	ENST00000374080.3:c.3032C>T	p.Ser1011Leu	p.S1011L	ENST00000374080		1011	tCg/tTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76889093	76889093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	124	284	0	ENST00000373344.5:c.4917G>T	p.Glu1639Asp	p.E1639D	ENST00000373344	NM_000489.3	1639	gaG/gaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76940493	76940493	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	145	307	0	ENST00000373344.5:c.600C>A	p.Cys200Ter	p.C200*	ENST00000373344	NM_000489.3	200	tgC/tgA																																																																														
ATRX	546	MSKCC	GRCh37	X	76954062	76954062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0045458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	208	386	0	ENST00000373344.5:c.189G>T	p.Glu63Asp	p.E63D	ENST00000373344	NM_000489.3	63	gaG/gaT																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	233	795	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	68	218	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	159	538	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020768	37020769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	138	474	0	ENST00000358127.4:c.76dupG	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gtt/gGtt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	246	859	11	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852248	63852248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145564601		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	192	554	0	ENST00000279873.7:c.3026C>T	p.Ala1009Val	p.A1009V	ENST00000279873	NM_032199.2	1009	gCg/gTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	312	741	3	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	360	933	4	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225342967	225342967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	51	292	1	ENST00000264414.4:c.2125C>T	p.Arg709Trp	p.R709W	ENST00000264414	NM_003590.4	709	Cgg/Tgg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	29	301	0	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	203	796	0	ENST00000346208.3:c.708dupC	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																																																														
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	85	298	1	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863319	57863319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	260	730	2	ENST00000228682.2:c.1418del	p.Gly473AlafsTer40	p.G473Afs*40	ENST00000228682	NM_005269.2	472	Ggg/gg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	248	730	2	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443617	49443617	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	98	739	1	ENST00000301067.7:c.3754C>T	p.Arg1252Ter	p.R1252*	ENST00000301067	NM_003482.3	1252	Cga/Tga																																																																														
CUL3	8452	MSKCC	GRCh37	2	225378265	225378266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	78	197	0	ENST00000264414.4:c.629dup	p.Leu210PhefsTer20	p.L210Ffs*20	ENST00000264414	NM_003590.4	210	ttg/ttTg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	141	561	0	ENST00000263377.2:c.766delC	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	42	422	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175759	176175760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	256	732	1	ENST00000367669.3:c.355dup	p.Leu119ProfsTer23	p.L119Pfs*23	ENST00000367669	NM_022457.5	119	ctc/cCtc																																																																														
SDHA	6389	MSKCC	GRCh37	5	226016	226016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	35	93	0	ENST00000264932.6:c.475C>T	p.Pro159Ser	p.P159S	ENST00000264932	NM_004168.2	159	Ccg/Tcg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515167	31515169	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	193	575	0	ENST00000344624.3:c.1216_1218delGAA	p.Glu406del	p.E406del	ENST00000344624		406	GAA/-																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981892	70981892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	216	886	0	ENST00000276594.2:c.204del	p.Phe69SerfsTer10	p.F69Sfs*10	ENST00000276594	NM_024504.3	68	ccC/cc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56494872	56494872	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112651994		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	195	521	1	ENST00000267101.3:c.3229C>T	p.Arg1077Trp	p.R1077W	ENST00000267101	NM_001982.3	1077	Cgg/Tgg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47685275	47685275	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	81	288	0	ENST00000347630.2:c.675del	p.Phe225LeufsTer30	p.F225Lfs*30	ENST00000347630	NM_001007230.1	225	ttT/tt																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202555	67202555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201231114		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	292	922	0	ENST00000312629.5:c.1364C>T	p.Pro455Leu	p.P455L	ENST00000312629	NM_003952.2	455	cCg/cTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098037	178098037	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	21	269	0	ENST00000397062.3:c.343T>A	p.Tyr115Asn	p.Y115N	ENST00000397062	NM_006164.4	115	Tac/Aac																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469931	25469931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	210	635	0	ENST00000264709.3:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000264709	NM_175629.2	371	Gag/Aag																																																																														
MPL	4352	MSKCC	GRCh37	1	43804993	43804993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	145	495	0	ENST00000372470.3:c.443G>A	p.Gly148Glu	p.G148E	ENST00000372470	NM_005373.2	148	gGg/gAg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115263266	115263266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	216	641	0	ENST00000438362.2:c.2084G>A	p.Gly695Glu	p.G695E	ENST00000438362	NM_001242891.1	695	gGg/gAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462092	120462092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148613210		P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	229	714	1	ENST00000256646.2:c.5624G>A	p.Arg1875Gln	p.R1875Q	ENST00000256646	NM_024408.3	1875	cGg/cAg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102196288	102196288	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	68	205	0	ENST00000263464.3:c.945G>A	p.Trp315Ter	p.W315*	ENST00000263464	NM_001165.4	315	tgG/tgA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376795	118376795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	140	339	0	ENST00000534358.1:c.10188G>T	p.Gln3396His	p.Q3396H	ENST00000534358	NM_005933.3	3396	caG/caT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446120	49446121	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	75	882	0	ENST00000301067.7:c.1345dup	p.Leu449ProfsTer6	p.L449Pfs*6	ENST00000301067	NM_003482.3	449	ctg/cCtg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914328	32914328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	93	338	0	ENST00000380152.3:c.5836T>C	p.Ser1946Pro	p.S1946P	ENST00000380152		1946	Tca/Cca																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643701	38643701	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	221	563	0	ENST00000299084.4:c.1171T>C	p.Cys391Arg	p.C391R	ENST00000299084	NM_152594.2	391	Tgt/Cgt																																																																														
MGA	23269	MSKCC	GRCh37	15	42042241	42042242	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	116	331	0	ENST00000219905.7:c.6437_6438del	p.Lys2146SerfsTer7	p.K2146Sfs*7	ENST00000219905	NM_001164273.1	2146	AAa/a																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99460036	99460036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	180	348	0	ENST00000268035.6:c.2132C>T	p.Ala711Val	p.A711V	ENST00000268035	NM_000875.3	711	gCc/gTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3645677	3645677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	293	767	0	ENST00000294008.3:c.1942G>A	p.Gly648Ser	p.G648S	ENST00000294008	NM_032444.2	648	Ggc/Agc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032156	10032156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	176	539	0	ENST00000330684.3:c.667C>A	p.His223Asn	p.H223N	ENST00000330684	NM_001134407.1	223	Cac/Aac																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	73	735	0	ENST00000285071.4:c.1283_1285dup	p.Pro428dup	p.P428dup	ENST00000285071	NM_144997.5	428	cac/cCCCac																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760927	59760927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	107	407	0	ENST00000259008.2:c.3480C>A	p.Asn1160Lys	p.N1160K	ENST00000259008	NM_032043.2	1160	aaC/aaA																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271755	15271755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	327	1190	0	ENST00000263388.2:c.6684C>A	p.Ser2228Arg	p.S2228R	ENST00000263388	NM_000435.2	2228	agC/agA																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260136	19260136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	82	735	1	ENST00000162023.5:c.157C>A	p.Arg53Ser	p.R53S	ENST00000162023		53	Cgc/Agc																																																																														
CIC	23152	MSKCC	GRCh37	19	42795322	42795322	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	249	921	0	ENST00000575354.2:c.2402G>C	p.Gly801Ala	p.G801A	ENST00000575354	NM_015125.3	801	gGc/gCc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905183	50905183	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	109	935	1	ENST00000440232.2:c.463+2T>C		p.X155_splice	ENST00000440232	NM_002691.3	155																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242793220	242793220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	274	934	0	ENST00000334409.5:c.857G>T	p.Trp286Leu	p.W286L	ENST00000334409	NM_005018.2	286	tGg/tTg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026821	71026823	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	41	183	0	ENST00000318789.4:c.1399_1401del	p.Pro467del	p.P467del	ENST00000318789	NM_032682.5	467	CCA/-																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31435883	31435883	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	101	317	0	ENST00000344624.3:c.3031A>G	p.Met1011Val	p.M1011V	ENST00000344624		1011	Atg/Gtg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721760	176721760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	130	452	0	ENST00000439151.2:c.7391G>A	p.Arg2464His	p.R2464H	ENST00000439151	NM_022455.4	2464	cGc/cAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453142	140453142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	65	273	0	ENST00000288602.6:c.1793C>T	p.Ala598Val	p.A598V	ENST00000288602	NM_004333.4	598	gCt/gTt																																																																														
FANCC	2176	MSKCC	GRCh37	9	97887441	97887441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	153	429	1	ENST00000289081.3:c.923C>T	p.Ala308Val	p.A308V	ENST00000289081	NM_000136.2	308	gCc/gTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11288735	11288735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	117	419	0	ENST00000361445.4:c.3020C>T	p.Ala1007Val	p.A1007V	ENST00000361445	NM_004958.3	1007	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088659	27088659	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	172	452	0	ENST00000324856.7:c.2272delC	p.Gln758ArgfsTer75	p.Q758Rfs*75	ENST00000324856	NM_006015.4	756	aaC/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101612	27101612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	177	639	1	ENST00000324856.7:c.4899del	p.Met1634Ter	p.M1634*	ENST00000324856	NM_006015.4	1632	Ccc/cc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100430	8100430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	161	661	0	ENST00000346208.3:c.404C>T	p.Pro135Leu	p.P135L	ENST00000346208		135	cCg/cTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717720	89717720	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	104	294	0	ENST00000371953.3:c.745del	p.Val249CysfsTer7	p.V249Cfs*7	ENST00000371953	NM_000314.4	249	Gtg/tg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	78	215	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	99	308	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392850	118392850	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	84	321	0	ENST00000534358.1:c.11882A>G	p.Asn3961Ser	p.N3961S	ENST00000534358	NM_005933.3	3961	aAc/aGc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416994	416994	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	109	285	0	ENST00000399788.2:c.3556A>G	p.Asn1186Asp	p.N1186D	ENST00000399788	NM_001042603.1	1186	Aac/Gac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444809	49444809	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	162	729	0	ENST00000301067.7:c.2657delC	p.Pro886LeufsTer44	p.P886Lfs*44	ENST00000301067	NM_003482.3	886	cCt/ct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	109	434	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445883	49445883	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	251	772	0	ENST00000301067.7:c.1583del	p.Pro528HisfsTer402	p.P528Hfs*402	ENST00000301067	NM_003482.3	528	cCa/ca																																																																														
SETD8	0	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	13	29	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																														
MGA	23269	MSKCC	GRCh37	15	41989044	41989044	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	64	323	2	ENST00000219905.7:c.1840del	p.Arg614GlufsTer7	p.R614Efs*7	ENST00000219905	NM_001164273.1	612	ggA/gg																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	73	407	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	83	262	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	82	336	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	79	298	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	139	483	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	132	608	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435313	56435313	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	129	497	0	ENST00000407977.2:c.1824del	p.Arg609GlyfsTer91	p.R609Gfs*91	ENST00000407977		608	ggG/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492791	56492792	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	152	413	0	ENST00000407977.2:c.147_148del	p.Arg49SerfsTer25	p.R49Sfs*25	ENST00000407977		49	agAGtg/agtg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	84	403	0	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554437	63554438	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	128	457	0	ENST00000307078.5:c.301_302del	p.Arg101GlyfsTer39	p.R101Gfs*39	ENST00000307078	NM_004655.3	101	AGg/g																																																																														
UPF1	5976	MSKCC	GRCh37	19	18966753	18966753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	178	631	0	ENST00000262803.5:c.1564C>A	p.Pro522Thr	p.P522T	ENST00000262803	NM_002911.3	522	Ccg/Acg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228594	36228594	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	515	644	0	ENST00000222270.7:c.7612del	p.Ala2538ProfsTer76	p.A2538Pfs*76	ENST00000222270	NM_014727.1	2536	gaG/ga																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919765	50919765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	565	692	2	ENST00000440232.2:c.2933G>A	p.Arg978His	p.R978H	ENST00000440232	NM_002691.3	978	cGt/cAt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085674	16085674	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	124	417	0	ENST00000281043.3:c.850A>T	p.Lys284Ter	p.K284*	ENST00000281043	NM_005378.4	284	Aag/Tag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467064	25467064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	137	585	1	ENST00000264709.3:c.1811G>A	p.Arg604Gln	p.R604Q	ENST00000264709	NM_175629.2	604	cGg/cAg																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873263	136873263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	82	242	0	ENST00000241393.3:c.235C>T	p.His79Tyr	p.H79Y	ENST00000241393	NM_003467.2	79	Cac/Tac																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266209	198266209	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	76	283	0	ENST00000335508.6:c.2411A>C	p.Asn804Thr	p.N804T	ENST00000335508	NM_012433.2	804	aAc/aCc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735457	40735457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	135	500	0	ENST00000373198.4:c.3416G>A	p.Arg1139Gln	p.R1139Q	ENST00000373198	NM_133170.3	1139	cGg/cAg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478757	57478757	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	90	272	0	ENST00000371085.3:c.348del	p.Val117TrpfsTer16	p.V117Wfs*16	ENST00000371085	NM_000516.4	115	Ccc/cc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176351	24176351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	159	644	0	ENST00000263121.7:c.1142C>T	p.Thr381Met	p.T381M	ENST00000263121	NM_003073.3	381	aCg/aTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	62	244	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37089123	37089125	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	89	294	0	ENST00000231790.2:c.1852_1854delAAG	p.Lys618del	p.K618del	ENST00000231790	NM_000249.3	615	ctGAAg/ctg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	147	457	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
KIT	3815	MSKCC	GRCh37	4	55594212	55594212	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	101	297	0	ENST00000288135.5:c.1915T>A	p.Ser639Thr	p.S639T	ENST00000288135	NM_000222.2	639	Tct/Act																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557909	187557909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	140	359	0	ENST00000441802.2:c.3802C>T	p.Arg1268Trp	p.R1268W	ENST00000441802	NM_005245.3	1268	Cgg/Tgg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	138	460	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	123	659	3	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045990	26045990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	88	303	0	ENST00000540144.1:c.352G>A	p.Val118Ile	p.V118I	ENST00000540144	NM_003531.2	118	Gtc/Atc																																																																														
PIM1	5292	MSKCC	GRCh37	6	37141841	37141841	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	129	351	0	ENST00000373509.5:c.916A>C	p.Ser306Arg	p.S306R	ENST00000373509	NM_002648.3	306	Agc/Cgc																																																																														
FYN	2534	MSKCC	GRCh37	6	112017495	112017495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	88	225	0	ENST00000368678.4:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000368678		340	Gag/Aag																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983228	149983228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	109	459	0	ENST00000253339.5:c.3030delT	p.Phe1010LeufsTer10	p.F1010Lfs*10	ENST00000253339		1010	ttT/tt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	89	352	0	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	75	229	0	ENST00000262189.6:c.427delA	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5066767	5066768	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	49	178	0	ENST00000381652.3:c.1310dup	p.Leu437PhefsTer12	p.L437Ffs*12	ENST00000381652	NM_004972.3	435	tat/taTt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904875	101904875	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	73	209	0	ENST00000374994.4:c.867del	p.Phe289LeufsTer4	p.F289Lfs*4	ENST00000374994	NM_004612.2	288	cTt/ct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417580	139417580	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	212	803	0	ENST00000277541.6:c.464G>C	p.Cys155Ser	p.C155S	ENST00000277541	NM_017617.3	155	tGc/tCc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317421	1317421	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0045713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	140	372	1				ENST00000381566																																																																																	
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121434569		P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	54	469	15	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	171	304	5	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	230	656	13	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	31	126	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	80	204	3	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743762	46743762	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	216	517	7	ENST00000371975.4:c.2052T>G	p.Cys684Trp	p.C684W	ENST00000371975	NM_003579.3	684	tgT/tgG																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170941	99170941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	70	420	6	ENST00000074304.5:c.1570G>A	p.Glu524Lys	p.E524K	ENST00000074304	NM_001134224.1	524	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	302	521	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251991	8251991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	164	691	4	ENST00000335790.3:c.86G>A	p.Arg29His	p.R29H	ENST00000335790	NM_002315.2	29	cGc/cAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859626	57859626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	106	492	0	ENST00000228682.2:c.680G>A	p.Arg227His	p.R227H	ENST00000228682	NM_005269.2	227	cGt/cAt																																																																														
PARK2	0	MSKCC	GRCh37	6	162394444	162394444	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	91	234	0	ENST00000366898.1:c.624T>G	p.Phe208Leu	p.F208L	ENST00000366898	NM_004562.2	208	ttT/ttG																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119966	70120018	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	-			P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	40	304	0	ENST00000245479.2:c.970_1022del	p.Thr324AlafsTer236	p.T324Afs*236	ENST00000245479	NM_000346.3	323	aGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG/a																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681031	37681031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143648695		P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	69	355	0	ENST00000447079.4:c.3200G>A	p.Arg1067Gln	p.R1067Q	ENST00000447079	NM_015083.1	1067	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40979271	40979271	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	86	410	0	ENST00000373198.4:c.1862T>C	p.Val621Ala	p.V621A	ENST00000373198	NM_133170.3	621	gTc/gCc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46271105	46271105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	131	353	0	ENST00000371998.3:c.3229G>A	p.Gly1077Ser	p.G1077S	ENST00000371998		1077	Ggc/Agc																																																																														
ALK	238	MSKCC	GRCh37	2	29445258	29445258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	8	505	0	ENST00000389048.3:c.3467G>T	p.Cys1156Phe	p.C1156F	ENST00000389048	NM_004304.4	1156	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	210	298	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	272	254	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MYC	4609	MSKCC	GRCh37	8	128750684	128750684	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	492	450	0	ENST00000377970.2:c.221C>G	p.Pro74Arg	p.P74R	ENST00000377970	NM_002467.4	74	cCg/cGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	232	342	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	275	386	0	ENST00000269305.4:c.730G>C	p.Gly244Arg	p.G244R	ENST00000269305	NM_001126112.2	244	Ggc/Cgc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66737031	66737031	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	223	318	0	ENST00000307102.5:c.554A>G	p.Lys185Arg	p.K185R	ENST00000307102	NM_002755.3	185	aAg/aGg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922250	39922251	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	94	330	0	ENST00000378444.4:c.3921dup	p.Gln1308SerfsTer18	p.Q1308Sfs*18	ENST00000378444	NM_001123385.1	1307	-/T																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041604	47041604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	40	474	0	ENST00000329236.7:c.1595G>A	p.Gly532Glu	p.G532E	ENST00000329236	NM_001204466.1	532	gGg/gAg																																																																														
XIAP	331	MSKCC	GRCh37	X	123019927	123019927	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	151	457	2	ENST00000355640.3:c.415T>C	p.Tyr139His	p.Y139H	ENST00000355640		139	Tat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	127	239	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	123	401	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038846	47038846	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	161	270	0	ENST00000329236.7:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000329236	NM_001204466.1	208	Caa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968823	15968823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	100	332	0	ENST00000268712.3:c.4927G>T	p.Gly1643Cys	p.G1643C	ENST00000268712	NM_006311.3	1643	Ggt/Tgt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53243870	53243870	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0045845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	125	194	0	ENST00000375401.3:c.1122+1G>A		p.X374_splice	ENST00000375401	NM_004187.3	374																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	165	391	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214612	5214612	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139132124		P-0045847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	197	514	2	ENST00000357368.4:c.4454C>T	p.Ala1485Val	p.A1485V	ENST00000357368	NM_002850.3	1485	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112174437	112174437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	38	152	0	ENST00000257430.4:c.3146G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tGg/tAg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103525619	103525619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	67	196	0	ENST00000355739.4:c.2890C>T	p.Arg964Trp	p.R964W	ENST00000355739	NM_000123.3	964	Cgg/Tgg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0045848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	323	365	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156732	20156732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	131	271	0	ENST00000379607.5:c.25G>C	p.Gly9Arg	p.G9R	ENST00000379607	NM_001412.3	9	Ggt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	32	300	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	34	291	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	65	530	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410072	63410072	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	48	648	0	ENST00000330258.3:c.3095del	p.Pro1032LeufsTer13	p.P1032Lfs*13	ENST00000330258	NM_152424.3	1032	cCt/ct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	50	239	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	97	360	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680721	30680721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61748586		P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	39	346	0	ENST00000376406.3:c.998C>T	p.Ala333Val	p.A333V	ENST00000376406	NM_014641.2	333	gCg/gTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247328	153247328	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	88	178	0	ENST00000281708.4:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000281708	NM_033632.3	492	Cag/Tag																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798968	45798968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	52	459	0	ENST00000372115.3:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000372115	NM_001048171.1	112	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247344	153247344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	31	176	0	ENST00000281708.4:c.1458G>T	p.Trp486Cys	p.W486C	ENST00000281708	NM_033632.3	486	tgG/tgT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602347	10602347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	114	599	0	ENST00000171111.5:c.1231G>A	p.Val411Met	p.V411M	ENST00000171111	NM_203500.1	411	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	42	265	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467491	25467491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	32	467	3	ENST00000264709.3:c.1585G>A	p.Asp529Asn	p.D529N	ENST00000264709	NM_175629.2	529	Gac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101376	27101377	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	G			P-0045857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	49	310	2	ENST00000324856.7:c.4658_4659delinsG	p.Pro1553ArgfsTer12	p.P1553Rfs*12	ENST00000324856	NM_006015.4	1553	cCC/cG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0045858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	24	252	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610486	81610486	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	25	233	0	ENST00000298171.2:c.2084A>C	p.Lys695Thr	p.K695T	ENST00000298171	NM_000369.2	695	aAg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	135	488	0	ENST00000269305.4:c.154del	p.Gln52AsnfsTer71	p.Q52Nfs*71	ENST00000269305	NM_001126112.2	52	Caa/aa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264890	46264890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	25	279	0	ENST00000371998.3:c.1760C>T	p.Ser587Leu	p.S587L	ENST00000371998		587	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	43	252	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	104	461	0	ENST00000326873.7:c.169del	p.Glu57LysfsTer7	p.E57Kfs*7	ENST00000326873	NM_000455.4	55	ctG/ct																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602698	10602698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	90	588	0	ENST00000171111.5:c.880G>T	p.Asp294Tyr	p.D294Y	ENST00000171111	NM_203500.1	294	Gac/Tac																																																																														
TEK	7010	MSKCC	GRCh37	9	27212732	27212732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	76	389	0	ENST00000380036.4:c.2714C>T	p.Ala905Val	p.A905V	ENST00000380036	NM_000459.3	905	gCg/gTg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469530	25469530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	81	520	0	ENST00000264709.3:c.1238del	p.Gly413AlafsTer238	p.G413Afs*238	ENST00000264709	NM_175629.2	413	gGc/gc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138548	11138548	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	83	422	0	ENST00000344626.4:c.3304T>C	p.Phe1102Leu	p.F1102L	ENST00000344626	NM_003072.3	1102	Ttc/Ctc																																																																														
MGA	23269	MSKCC	GRCh37	15	42041722	42041722	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	27	277	0	ENST00000219905.7:c.5917C>T	p.Gln1973Ter	p.Q1973*	ENST00000219905	NM_001164273.1	1973	Cag/Tag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868193	45868193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	367	510	0	ENST00000391945.4:c.497G>C	p.Arg166Pro	p.R166P	ENST00000391945	NM_000400.3	166	cGt/cCt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714542	52714542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	87	441	0	ENST00000322088.6:c.300G>C	p.Glu100Asp	p.E100D	ENST00000322088	NM_014225.5	100	gaG/gaC																																																																														
JAK2	3717	MSKCC	GRCh37	9	5050722	5050722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	66	243	2	ENST00000381652.3:c.505C>T	p.Pro169Ser	p.P169S	ENST00000381652	NM_004972.3	169	Cct/Tct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994225	21994225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	96	452	0	ENST00000361570.3:c.229G>T	p.Ala77Ser	p.A77S	ENST00000361570	NM_058195.3	77	Gcg/Tcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994225	21994225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	96	452	0	ENST00000361570.3:c.229G>T	p.Ala77Ser	p.A77S	ENST00000361570	NM_058195.3	77	Gcg/Tcg																																																																														
MED12	9968	MSKCC	GRCh37	X	70345287	70345289	+	missense_variant	Missense_Mutation	ONP	CAA	CAA	GAG			P-0045860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	27	407	0	ENST00000374080.3:c.2313_2315delinsGAG	p.Ile771_Lys772delinsMetArg	p.I771_K772delinsMR	ENST00000374080		771	atCAAg/atGAGg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65305460	65305460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	151	289	0	ENST00000342505.4:c.2668G>C	p.Glu890Gln	p.E890Q	ENST00000342505	NM_002227.2	890	Gag/Cag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120484280	120484280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	53	274	0	ENST00000256646.2:c.2850G>A	p.Met950Ile	p.M950I	ENST00000256646	NM_024408.3	950	atG/atA																																																																														
NUF2	83540	MSKCC	GRCh37	1	163315571	163315571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	13	228	0	ENST00000271452.3:c.911C>T	p.Ser304Leu	p.S304L	ENST00000271452	NM_145697.2	304	tCa/tTa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193094319	193094319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	74	233	0	ENST00000367435.3:c.209C>T	p.Ser70Phe	p.S70F	ENST00000367435	NM_024529.4	70	tCt/tTt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981500	201981500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	56	381	0	ENST00000359651.3:c.414G>A	p.Trp138Ter	p.W138*	ENST00000359651		138	tgG/tgA																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981507	201981507	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	51	390	0	ENST00000359651.3:c.421G>T	p.Glu141Ter	p.E141*	ENST00000359651		141	Gag/Tag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945363	71945363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	78	466	0	ENST00000298229.2:c.2251G>A	p.Glu751Lys	p.E751K	ENST00000298229	NM_001567.3	751	Gag/Aag																																																																														
PGR	5241	MSKCC	GRCh37	11	100998292	100998292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	19	93	0	ENST00000325455.5:c.1510G>A	p.Ala504Thr	p.A504T	ENST00000325455	NM_001202474.3	504	Gcc/Acc																																																																														
ATM	472	MSKCC	GRCh37	11	108114679	108114679	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	36	130	0	ENST00000278616.4:c.497-1G>C		p.X166_splice	ENST00000278616	NM_000051.3	166																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118343550	118343550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	58	281	0	ENST00000534358.1:c.1676C>T	p.Ser559Leu	p.S559L	ENST00000534358	NM_005933.3	559	tCg/tTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374867	118374867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	15	197	0	ENST00000534358.1:c.8260G>A	p.Glu2754Lys	p.E2754K	ENST00000534358	NM_005933.3	2754	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350198	89350198	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	82	483	0	ENST00000301030.4:c.2752G>C	p.Glu918Gln	p.E918Q	ENST00000301030	NM_001256183.1	918	Gag/Cag																																																																														
NF1	4763	MSKCC	GRCh37	17	29556179	29556179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	18	89	0	ENST00000358273.4:c.2546G>A	p.Gly849Glu	p.G849E	ENST00000358273	NM_001042492.2	849	gGa/gAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627371	37627371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	77	402	0	ENST00000447079.4:c.1286G>C	p.Arg429Thr	p.R429T	ENST00000447079	NM_015083.1	429	aGa/aCa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740678	58740678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	90	325	0	ENST00000305921.3:c.1583G>A	p.Arg528Lys	p.R528K	ENST00000305921	NM_003620.3	528	aGa/aAa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25466782	25466782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	58	411	0	ENST00000264709.3:c.1921G>C	p.Asp641His	p.D641H	ENST00000264709	NM_175629.2	641	Gat/Cat																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249913	39249913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	72	400	0	ENST00000402219.2:c.1656G>T	p.Arg552Ser	p.R552S	ENST00000402219	NM_005633.3	552	agG/agT																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010415	48010415	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	98	289	0	ENST00000234420.5:c.43C>G	p.Pro15Ala	p.P15A	ENST00000234420	NM_000179.2	15	Ccg/Gcg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736181	204736181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	19	216	0	ENST00000302823.3:c.538C>G	p.Leu180Val	p.L180V	ENST00000302823	NM_005214.4	180	Ctc/Gtc																																																																														
SRC	6714	MSKCC	GRCh37	20	36030058	36030058	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	279	420	0	ENST00000358208.4:c.1093C>T	p.Gln365Ter	p.Q365*	ENST00000358208		365	Cag/Tag																																																																														
SRC	6714	MSKCC	GRCh37	20	36030837	36030837	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	169	242	0	ENST00000358208.4:c.1117-1G>A		p.X373_splice	ENST00000358208		373																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24129386	24129386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	55	203	0	ENST00000263121.7:c.30C>A	p.Phe10Leu	p.F10L	ENST00000263121	NM_003073.3	10	ttC/ttA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133488	55133488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	76	289	0	ENST00000257290.5:c.792C>G	p.Ile264Met	p.I264M	ENST00000257290	NM_006206.4	264	atC/atG																																																																														
KDR	3791	MSKCC	GRCh37	4	55968136	55968136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	61	318	0	ENST00000263923.4:c.2194G>A	p.Glu732Lys	p.E732K	ENST00000263923	NM_002253.2	732	Gaa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247175	153247175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	57	215	0	ENST00000281708.4:c.1627A>G	p.Arg543Gly	p.R543G	ENST00000281708	NM_033632.3	543	Aga/Gga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	107	139	1				ENST00000310581	NM_198253.2																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38982103	38982103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	34	216	0	ENST00000357387.3:c.619G>A	p.Gly207Arg	p.G207R	ENST00000357387	NM_152756.3	207	Gga/Aga																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177456	56177456	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	32	262	0	ENST00000399503.3:c.2429C>G	p.Ser810Ter	p.S810*	ENST00000399503	NM_005921.1	810	tCa/tGa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32183067	32183067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	96	458	0	ENST00000375023.3:c.1957G>A	p.Asp653Asn	p.D653N	ENST00000375023	NM_004557.3	653	Gat/Aat																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798510	32798510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	94	414	1	ENST00000374899.4:c.1346G>A	p.Arg449Gln	p.R449Q	ENST00000374899	NM_018833.2	449	cGa/cAa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651978	36651979	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	196	466	0	ENST00000244741.5:c.102_103del	p.Cys34Ter	p.C34*	ENST00000244741	NM_000389.4	34	TGt/t																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652048	36652049	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	385	569	0	ENST00000244741.5:c.171dup	p.Pro58ThrfsTer5	p.P58Tfs*5	ENST00000244741	NM_000389.4	57	aca/acAa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109308755	109308755	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	12	167	0	ENST00000436639.2:c.1648A>G	p.Met550Val	p.M550V	ENST00000436639	NM_014454.2	550	Atg/Gtg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099233	157099233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	64	344	0	ENST00000346085.5:c.170C>T	p.Ser57Leu	p.S57L	ENST00000346085	NM_020732.3	57	tCg/tTg																																																																														
CDK6	1021	MSKCC	GRCh37	7	92247496	92247496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	18	211	0	ENST00000265734.4:c.724G>A	p.Asp242Asn	p.D242N	ENST00000265734	NM_001259.6	242	Gac/Aac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836846	151836846	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	191	324	1	ENST00000262189.6:c.14374G>C	p.Glu4792Gln	p.E4792Q	ENST00000262189	NM_170606.2	4792	Gag/Cag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845956	151845956	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	34	351	0	ENST00000262189.6:c.13056G>A	p.Trp4352Ter	p.W4352*	ENST00000262189	NM_170606.2	4352	tgG/tgA																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187266	38187266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	186	398	0	ENST00000317025.8:c.1211C>T	p.Ser404Phe	p.S404F	ENST00000317025	NM_023034.1	404	tCc/tTc																																																																														
PAX5	5079	MSKCC	GRCh37	9	37034007	37034007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	43	255	1	ENST00000358127.4:c.22C>T	p.Pro8Ser	p.P8S	ENST00000358127	NM_001280556.1	8	Ccg/Tcg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932138	39932138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201595640		P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	177	449	0	ENST00000378444.4:c.2461G>A	p.Val821Met	p.V821M	ENST00000378444	NM_001123385.1	821	Gtg/Atg																																																																														
ATRX	546	MSKCC	GRCh37	X	76778789	76778789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	42	329	0	ENST00000373344.5:c.6790G>A	p.Glu2264Lys	p.E2264K	ENST00000373344	NM_000489.3	2264	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76854957	76854957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	24	398	0	ENST00000373344.5:c.5879C>T	p.Ser1960Leu	p.S1960L	ENST00000373344	NM_000489.3	1960	tCa/tTa																																																																														
XIAP	331	MSKCC	GRCh37	X	123020196	123020196	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	69	388	0	ENST00000355640.3:c.684C>G	p.Phe228Leu	p.F228L	ENST00000355640		228	ttC/ttG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	201	412	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	29	300	1	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	29	300	1	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524968	8524968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	35	201	0	ENST00000356435.5:c.636C>A	p.Ser212Arg	p.S212R	ENST00000356435		212	agC/agA																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149456932	149456932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148357861		P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	87	338	0	ENST00000286301.3:c.796G>A	p.Asp266Asn	p.D266N	ENST00000286301	NM_005211.3	266	Gat/Aat																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488225	56488225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	69	373	1	ENST00000267101.3:c.1744G>T	p.Gly582Trp	p.G582W	ENST00000267101	NM_001982.3	582	Ggg/Tgg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88727487	88727487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	103	416	0	ENST00000360948.2:c.292G>T	p.Asp98Tyr	p.D98Y	ENST00000360948	NM_001012338.2	98	Gac/Tac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790123	40790123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	71	411	2	ENST00000373198.4:c.2608C>T	p.Arg870Cys	p.R870C	ENST00000373198	NM_133170.3	870	Cgc/Tgc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371662	55371662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	30	404	0	ENST00000297316.4:c.352G>A	p.Val118Met	p.V118M	ENST00000297316	NM_022454.3	118	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	29	300	1	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287202	46287202	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	14	220	0	ENST00000334344.6:c.5148-1G>T		p.X1716_splice	ENST00000334344	NM_152641.2	1716																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78921093	78921093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	31	367	1	ENST00000306801.3:c.3207G>T	p.Arg1069Ser	p.R1069S	ENST00000306801	NM_020761.2	1069	agG/agT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575108	48575108	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	51	223	0	ENST00000342988.3:c.302G>T	p.Trp101Leu	p.W101L	ENST00000342988	NM_005359.5	101	tGg/tTg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852308	63852308	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	91	366	0	ENST00000279873.7:c.3088del	p.Ala1030GlnfsTer5	p.A1030Qfs*5	ENST00000279873	NM_032199.2	1029	cGg/cg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270165	66270165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	46	203	0	ENST00000273854.3:c.1717C>A	p.Pro573Thr	p.P573T	ENST00000273854	NM_004439.5	573	Cct/Act																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945081	31945081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	83	372	0	ENST00000340398.3:c.20C>A	p.Thr7Asn	p.T7N	ENST00000340398	NM_001013699.2	7	aCt/aAt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81528511	81528511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	21	212	0	ENST00000298171.2:c.190C>A	p.Leu64Met	p.L64M	ENST00000298171	NM_000369.2	64	Ctg/Atg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356335	66356335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	50	269	0	ENST00000273854.3:c.1162G>T	p.Asp388Tyr	p.D388Y	ENST00000273854	NM_004439.5	388	Gac/Tac																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411091	63411091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	36	191	0	ENST00000330258.3:c.2076G>T	p.Glu692Asp	p.E692D	ENST00000330258	NM_152424.3	692	gaG/gaT																																																																														
IDH2	3418	MSKCC	GRCh37	15	90634797	90634797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	35	320	0	ENST00000330062.3:c.195C>A	p.Phe65Leu	p.F65L	ENST00000330062	NM_002168.2	65	ttC/ttA																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522014	157522014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	32	402	0	ENST00000346085.5:c.4286G>T	p.Arg1429Met	p.R1429M	ENST00000346085	NM_020732.3	1429	aGg/aTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55955906	55955906	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	46	286	0	ENST00000263923.4:c.3256A>T	p.Ser1086Cys	p.S1086C	ENST00000263923	NM_002253.2	1086	Agt/Tgt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462852	120462852	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	27	185	0	ENST00000256646.2:c.5479G>T	p.Asp1827Tyr	p.D1827Y	ENST00000256646	NM_024408.3	1827	Gat/Tat																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156836771	156836771	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	60	443	1	ENST00000524377.1:c.428+1G>T		p.X143_splice	ENST00000524377	NM_002529.3	143																																																																															
NUF2	83540	MSKCC	GRCh37	1	163317592	163317592	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	11	191	0	ENST00000271452.3:c.988G>T	p.Glu330Ter	p.E330*	ENST00000271452	NM_145697.2	330	Gaa/Taa																																																																														
FH	2271	MSKCC	GRCh37	1	241665871	241665871	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	23	235	0	ENST00000366560.3:c.1109-1G>C		p.X370_splice	ENST00000366560	NM_000143.3	370																																																																															
TET1	80312	MSKCC	GRCh37	10	70406117	70406117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	24	328	0	ENST00000373644.4:c.3631G>A	p.Gly1211Arg	p.G1211R	ENST00000373644	NM_030625.2	1211	Ggg/Agg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211474	46211474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	18	157	0	ENST00000334344.6:c.440G>T	p.Gly147Val	p.G147V	ENST00000334344	NM_152641.2	147	gGg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428372	49428372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	80	440	0	ENST00000301067.7:c.10433G>T	p.Ser3478Ile	p.S3478I	ENST00000301067	NM_003482.3	3478	aGt/aTt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863354	57863354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	96	476	0	ENST00000228682.2:c.1449G>T	p.Glu483Asp	p.E483D	ENST00000228682	NM_005269.2	483	gaG/gaT																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112412	115112412	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	88	361	0	ENST00000257566.3:c.1328C>A	p.Ser443Ter	p.S443*	ENST00000257566	NM_016569.3	443	tCg/tAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133249278	133249278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	90	416	0	ENST00000320574.5:c.1621G>T	p.Gly541Trp	p.G541W	ENST00000320574	NM_006231.2	541	Ggg/Tgg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589323	28589323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	28	213	0	ENST00000241453.7:c.2724G>T	p.Met908Ile	p.M908I	ENST00000241453	NM_004119.2	908	atG/atT																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636038	28636038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	63	401	2	ENST00000241453.7:c.334C>A	p.Leu112Met	p.L112M	ENST00000241453	NM_004119.2	112	Ctg/Atg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906807	32906807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	47	397	0	ENST00000380152.3:c.1192C>G	p.Leu398Val	p.L398V	ENST00000380152		398	Cta/Gta																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281089	49281089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	46	391	0	ENST00000282018.3:c.136C>G	p.Leu46Val	p.L46V	ENST00000282018	NM_020377.2	46	Ctg/Gtg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438155	110438155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	27	172	0	ENST00000375856.3:c.246G>T	p.Trp82Cys	p.W82C	ENST00000375856	NM_003749.2	82	tgG/tgT																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68292201	68292201	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	34	204	0	ENST00000487270.1:c.105del	p.Leu36TrpfsTer4	p.L36Wfs*4	ENST00000487270	NM_133509.3	35	ccA/cc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606159	81606159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	43	326	0	ENST00000298171.2:c.829C>T	p.Leu277Phe	p.L277F	ENST00000298171	NM_000369.2	277	Ctt/Ttt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610123	81610123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	45	292	0	ENST00000298171.2:c.1721C>A	p.Thr574Asn	p.T574N	ENST00000298171	NM_000369.2	574	aCc/aAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42059449	42059450	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	51	272	1	ENST00000219905.7:c.9169_9170delinsTT	p.Gly3057Leu	p.G3057L	ENST00000219905	NM_001164273.1	3057	GGg/TTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781320	3781320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	74	539	0	ENST00000262367.5:c.5045G>C	p.Arg1682Pro	p.R1682P	ENST00000262367	NM_004380.2	1682	cGc/cCc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857399	9857399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	38	298	0	ENST00000330684.3:c.4002C>A	p.Ser1334Arg	p.S1334R	ENST00000330684	NM_001134407.1	1334	agC/agA																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029395	14029395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	42	227	1	ENST00000311895.7:c.1606G>T	p.Val536Leu	p.V536L	ENST00000311895	NM_005236.2	536	Gta/Tta																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641301	23641301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	69	413	0	ENST00000261584.4:c.2174C>T	p.Ser725Leu	p.S725L	ENST00000261584	NM_024675.3	725	tCa/tTa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783870	50783870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	37	395	0	ENST00000398568.2:c.261G>T	p.Lys87Asn	p.K87N	ENST00000398568	NM_001042412.1	87	aaG/aaT																																																																														
EZH1	2145	MSKCC	GRCh37	17	40874855	40874855	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	43	348	1	ENST00000428826.2:c.445G>T	p.Glu149Ter	p.E149*	ENST00000428826		149	Gag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602854	10602854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	59	505	0	ENST00000171111.5:c.724G>C	p.Glu242Gln	p.E242Q	ENST00000171111	NM_203500.1	242	Gag/Cag																																																																														
ALK	238	MSKCC	GRCh37	2	29519785	29519785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	56	325	0	ENST00000389048.3:c.1786A>G	p.Met596Val	p.M596V	ENST00000389048	NM_004304.4	596	Atg/Gtg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46588109	46588109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	177	448	1	ENST00000263734.3:c.659C>A	p.Ser220Tyr	p.S220Y	ENST00000263734	NM_001430.4	220	tCc/tAc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286777	212286777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	33	237	1	ENST00000342788.4:c.2919G>T	p.Glu973Asp	p.E973D	ENST00000342788	NM_005235.2	973	gaG/gaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286805	212286805	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	36	216	0	ENST00000342788.4:c.2891G>C	p.Arg964Thr	p.R964T	ENST00000342788	NM_005235.2	964	aGa/aCa																																																																														
INHA	3623	MSKCC	GRCh37	2	220439824	220439824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	98	564	0	ENST00000243786.2:c.677G>T	p.Gly226Val	p.G226V	ENST00000243786	NM_002191.3	226	gGa/gTa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660718	227660718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	200	486	0	ENST00000305123.5:c.2737G>T	p.Val913Leu	p.V913L	ENST00000305123	NM_005544.2	913	Gtg/Ttg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710554	40710554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	69	450	1	ENST00000373198.4:c.4297C>A	p.Arg1433Ser	p.R1433S	ENST00000373198	NM_133170.3	1433	Cgt/Agt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46251026	46251026	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	44	202	0	ENST00000371998.3:c.35C>G	p.Ala12Gly	p.A12G	ENST00000371998		12	gCc/gGc																																																																														
ERG	2078	MSKCC	GRCh37	21	39795449	39795449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144012510		P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	139	426	1	ENST00000288319.7:c.271G>A	p.Gly91Arg	p.G91R	ENST00000288319	NM_182918.3	91	Ggg/Agg																																																																														
NF2	4771	MSKCC	GRCh37	22	30057222	30057222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	73	300	0	ENST00000338641.4:c.704G>C	p.Gly235Ala	p.G235A	ENST00000338641	NM_000268.3	235	gGa/gCa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098342	47098342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	43	292	0	ENST00000409792.3:c.6932C>T	p.Pro2311Leu	p.P2311L	ENST00000409792	NM_014159.6	2311	cCt/cTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163851	47163851	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	29	299	0	ENST00000409792.3:c.2275A>T	p.Lys759Ter	p.K759*	ENST00000409792	NM_014159.6	759	Aaa/Taa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637750	52637750	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	28	211	0	ENST00000394830.3:c.2568-2A>T		p.X856_splice	ENST00000394830	NM_018313.4	856																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55127391	55127392	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	69	343	1	ENST00000257290.5:c.179_180delinsAG	p.Pro60Gln	p.P60Q	ENST00000257290	NM_006206.4	60	cCC/cAG																																																																														
KDR	3791	MSKCC	GRCh37	4	55984770	55984770	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	45	249	0	ENST00000263923.4:c.358+1G>C		p.X120_splice	ENST00000263923	NM_002253.2	120																																																																															
SDHA	6389	MSKCC	GRCh37	5	233622	233622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	27	174	0	ENST00000264932.6:c.926A>G	p.Glu309Gly	p.E309G	ENST00000264932	NM_004168.2	309	gAa/gGa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31449450	31449450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	40	304	0	ENST00000344624.3:c.2759G>T	p.Cys920Phe	p.C920F	ENST00000344624		920	tGt/tTt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56170970	56170970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	18	205	0	ENST00000399503.3:c.1798G>T	p.Gly600Trp	p.G600W	ENST00000399503	NM_005921.1	600	Ggg/Tgg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517519	176517519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	78	530	0	ENST00000292408.4:c.220G>C	p.Ala74Pro	p.A74P	ENST00000292408	NM_213647.1	74	Gca/Cca																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056145	26056145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	62	310	0	ENST00000343677.2:c.512C>A	p.Ala171Asp	p.A171D	ENST00000343677	NM_005319.3	171	gCt/gAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120222	94120222	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	13	181	0	ENST00000369303.4:c.829G>T	p.Glu277Ter	p.E277*	ENST00000369303	NM_004440.3	277	Gaa/Taa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163779	152163779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	48	282	0	ENST00000206249.3:c.500G>T	p.Ser167Ile	p.S167I	ENST00000206249	NM_000125.3	167	aGt/aTt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157454173	157454174	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	38	246	0	ENST00000346085.5:c.2383_2384delinsTT	p.Gly795Phe	p.G795F	ENST00000346085	NM_020732.3	795	GGc/TTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528860	157528860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	73	363	0	ENST00000346085.5:c.6585G>T	p.Met2195Ile	p.M2195I	ENST00000346085	NM_020732.3	2195	atG/atT																																																																														
PARK2	0	MSKCC	GRCh37	6	161969983	161969983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	50	351	0	ENST00000366898.1:c.986G>T	p.Gly329Val	p.G329V	ENST00000366898	NM_004562.2	329	gGc/gTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268081	55268081	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	106	438	0	ENST00000275493.2:c.2921A>T	p.Asp974Val	p.D974V	ENST00000275493	NM_005228.3	974	gAc/gTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81335673	81335673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	17	260	0	ENST00000222390.5:c.1687C>A	p.Gln563Lys	p.Q563K	ENST00000222390	NM_000601.4	563	Cag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116339884	116339884	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	33	294	0	ENST00000397752.3:c.746A>T	p.Tyr249Phe	p.Y249F	ENST00000397752	NM_000245.2	249	tAt/tTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453143	140453143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	28	225	0	ENST00000288602.6:c.1792G>A	p.Ala598Thr	p.A598T	ENST00000288602	NM_004333.4	598	Gct/Act																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151960208	151960208	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	12	124	0	ENST00000262189.6:c.1192G>T	p.Gly398Ter	p.G398*	ENST00000262189	NM_170606.2	398	Gga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012277	152012277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	37	318	0	ENST00000262189.6:c.536G>T	p.Gly179Val	p.G179V	ENST00000262189	NM_170606.2	179	gGa/gTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507389	8507389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	30	228	0	ENST00000356435.5:c.1589C>G	p.Thr530Arg	p.T530R	ENST00000356435		530	aCa/aGa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413240	139413240	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	118	545	0	ENST00000277541.6:c.902T>A	p.Leu301Gln	p.L301Q	ENST00000277541	NM_017617.3	301	cTg/cAg																																																																														
AR	367	MSKCC	GRCh37	X	66765620	66765620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	53	247	0	ENST00000374690.3:c.632C>G	p.Ala211Gly	p.A211G	ENST00000374690	NM_000044.3	211	gCg/gGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	34	277	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	17	306	0	ENST00000371085.3:c.680A>T	p.Gln227Leu	p.Q227L	ENST00000371085	NM_000516.4	227	cAg/cTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	77	189	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	418	352	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	216	390	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444662	78444663	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGA			P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	159	307	0	ENST00000370768.2:c.24_26dup	p.Pro10dup	p.P10dup	ENST00000370768	NM_003902.3	10	ccc/ccTCCc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3841996	3841996	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	151	194	0	ENST00000262367.5:c.1316A>T	p.Lys439Met	p.K439M	ENST00000262367	NM_004380.2	439	aAg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259475	55259475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	455	264	0	ENST00000275493.2:c.2533G>T	p.Val845Leu	p.V845L	ENST00000275493	NM_005228.3	845	Gtg/Ttg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55270181	55270237	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTAACCTTCCCTCATTTCCTCCTGCAGCTGCAAAGCTGTCCCATCAAGGAAGACA	GAGTAACCTTCCCTCATTTCCTCCTGCAGCTGCAAAGCTGTCCCATCAAGGAAGACA	-			P-0045867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	545	414	0	ENST00000275493.2:c.3163-28_3191del		p.X1055_splice	ENST00000275493	NM_005228.3	1055																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	15	213	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	27	275	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	176	554	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0045887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	68	355	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	117	368	0	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																														
PGR	5241	MSKCC	GRCh37	11	100996782	100996782	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	142	403	0	ENST00000325455.5:c.1745T>A	p.Leu582His	p.L582H	ENST00000325455	NM_001202474.3	582	cTt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	115	311	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	210	375	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	145	417	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	88	316	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	73	195	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028619	12028619	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	39	302	0	ENST00000353533.5:c.822A>C	p.Arg274Ser	p.R274S	ENST00000353533	NM_003010.3	274	agA/agC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575162	48575162	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	103	307	0	ENST00000342988.3:c.356T>G	p.Phe119Cys	p.F119C	ENST00000342988	NM_005359.5	119	tTt/tGt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18966012	18966012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	150	495	0	ENST00000262803.5:c.1505C>T	p.Ser502Leu	p.S502L	ENST00000262803	NM_002911.3	502	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	272	473	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317011	11317011	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	175	369	0	ENST00000361445.4:c.483T>A	p.Asn161Lys	p.N161K	ENST00000361445	NM_004958.3	161	aaT/aaA																																																																														
BRCA1	672	MSKCC	GRCh37	17	41276045	41276051	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTAAG	CTCTAAG	-			P-0045890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	151	349	0	ENST00000357654.3:c.63_69del	p.Leu22ValfsTer7	p.L22Vfs*7	ENST00000357654	NM_007294.3	21	atCTTAGAG/at																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8339049	8339049	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0045890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	151	273	0	ENST00000356435.5:c.5254-2A>T		p.X1752_splice	ENST00000356435		1752																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	109	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	206	507	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0045891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	79	247	0	ENST00000257430.4:c.4059_4060del	p.Glu1353AspfsTer21	p.E1353Dfs*21	ENST00000257430	NM_000038.5	1353	gaATtt/gatt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138564	11138564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	169	520	0	ENST00000344626.4:c.3320C>T	p.Ser1107Phe	p.S1107F	ENST00000344626	NM_003072.3	1107	tCc/tTc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114799817	114799817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	131	447	0	ENST00000543371.1:c.484C>T	p.Gln162Ter	p.Q162*	ENST00000543371	NM_001198531.1	162	Cag/Tag																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61213433	61213433	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	58	345	0	ENST00000301761.2:c.391A>G	p.Ile131Val	p.I131V	ENST00000301761	NM_017841.2	131	Ata/Gta																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418397	139418397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	186	540	0	ENST00000277541.6:c.175G>A	p.Asp59Asn	p.D59N	ENST00000277541	NM_017617.3	59	Gac/Aac																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	124	263	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	132	302	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711973	89711975	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0045892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	151	317	0	ENST00000371953.3:c.595_597del	p.Met199del	p.M199del	ENST00000371953	NM_000314.4	197	aaGATg/aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779814	3779814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	203	549	1	ENST00000262367.5:c.5234G>A	p.Trp1745Ter	p.W1745*	ENST00000262367	NM_004380.2	1745	tGg/tAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692945	89692946	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAATA			P-0045892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	129	409	1	ENST00000371953.3:c.433_434insAAAAT	p.Phe145Ter	p.F145*	ENST00000371953	NM_000314.4	143	-/AAATA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692959	89692959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	126	382	0	ENST00000371953.3:c.443C>T	p.Ala148Val	p.A148V	ENST00000371953	NM_000314.4	148	gCa/gTa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650724	67650724	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	273	458	0	ENST00000264010.4:c.1029C>A	p.Tyr343Ter	p.Y343*	ENST00000264010	NM_006565.3	343	taC/taA																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350879	89350879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	298	625	0	ENST00000301030.4:c.2071C>T	p.Arg691Cys	p.R691C	ENST00000301030	NM_001256183.1	691	Cgc/Tgc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589220	67589234	+	inframe_deletion	In_Frame_Del	DEL	AATTAATAAACCACT	AATTAATAAACCACT	-			P-0045892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	89	299	0	ENST00000274335.5:c.1209_1223del	p.Glu403_Tyr408delinsAsp	p.E403_Y408delinsD	ENST00000274335		403	gAATTAATAAACCACTac/gac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590394	67590395	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	31	131	0	ENST00000274335.5:c.1457dup	p.Phe487IlefsTer2	p.F487Ifs*2	ENST00000274335		486	gca/gCca																																																																														
MED12	9968	MSKCC	GRCh37	X	70342629	70342629	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	245	494	0	ENST00000374080.3:c.1390G>T	p.Asp464Tyr	p.D464Y	ENST00000374080		464	Gac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	115	247	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	91	271	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	97	320	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	217	512	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522751	67522751	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	86	223	0	ENST00000274335.5:c.248C>A	p.Ser83Ter	p.S83*	ENST00000274335		83	tCg/tAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435145	18435145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	87	290	0	ENST00000266497.5:c.130G>C	p.Val44Leu	p.V44L	ENST00000266497		44	Gta/Cta																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159161	143159161	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0045894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	41	190	0	ENST00000262992.4:c.692T>G	p.Leu231Ter	p.L231*	ENST00000262992	NM_001101669.1	231	tTa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	190	406	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	47	204	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	18	326	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53231106	53231106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	25	213	1	ENST00000375401.3:c.1796G>A	p.Arg599His	p.R599H	ENST00000375401	NM_004187.3	599	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	41	201	0	ENST00000257430.4:c.3980C>A	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018193	48018193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	101	388	0	ENST00000234420.5:c.388C>T	p.His130Tyr	p.H130Y	ENST00000234420	NM_000179.2	130	Cat/Tat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535316	66535316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	41	401	1	ENST00000273854.3:c.145G>A	p.Ala49Thr	p.A49T	ENST00000273854	NM_004439.5	49	Gca/Aca																																																																														
ALK	238	MSKCC	GRCh37	2	30143404	30143404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	83	349	0	ENST00000389048.3:c.122G>A	p.Arg41Gln	p.R41Q	ENST00000389048	NM_004304.4	41	cGg/cAg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794374	242794374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	144	505	0	ENST00000334409.5:c.568G>A	p.Val190Ile	p.V190I	ENST00000334409	NM_005018.2	190	Gtc/Atc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	88	283	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0045897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	69	244	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0045897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	150	422	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	113	288	1	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692851	89692851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	46	134	0	ENST00000371953.3:c.335T>C	p.Leu112Pro	p.L112P	ENST00000371953	NM_000314.4	112	cTa/cCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	77	363	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106480	27106481	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0045897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	203	476	0	ENST00000324856.7:c.6092dup	p.Tyr2031Ter	p.Y2031*	ENST00000324856	NM_006015.4	2031	tat/tAat																																																																														
NF2	4771	MSKCC	GRCh37	22	30050676	30050676	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150667239		P-0045897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	108	364	2	ENST00000338641.4:c.478C>T	p.Arg160Trp	p.R160W	ENST00000338641	NM_000268.3	160	Cgg/Tgg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729447	41729447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	166	487	0	ENST00000242208.4:c.1082C>T	p.Thr361Met	p.T361M	ENST00000242208	NM_002192.2	361	aCg/aTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692896	89692904	+	inframe_deletion	In_Frame_Del	DEL	GAAAGGGAC	GAAAGGGAC	-			P-0045897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	61	284	1	ENST00000371953.3:c.383_391del	p.Lys128_Arg130del	p.K128_R130del	ENST00000371953	NM_000314.4	127	gGAAAGGGACga/gga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	472207	472208	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0045897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	124	369	1	ENST00000399788.2:c.593_594delinsAT	p.Ser198Asn	p.S198N	ENST00000399788	NM_001042603.1	198	aGC/aAT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829322	72829322	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	199	477	0	ENST00000268489.5:c.7259A>C	p.Asn2420Thr	p.N2420T	ENST00000268489	NM_006885.3	2420	aAt/aCt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502182	157502182	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	190	406	0	ENST00000346085.5:c.3215G>A	p.Trp1072Ter	p.W1072*	ENST00000346085	NM_020732.3	1072	tGg/tAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591891	48591891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936394		P-0045898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	135	428	0	ENST00000342988.3:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000342988	NM_005359.5	352	Gga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	93	325	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0045898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	171	577	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120460349	120460349	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	122	437	0	ENST00000256646.2:c.5966A>C	p.Asn1989Thr	p.N1989T	ENST00000256646	NM_024408.3	1989	aAt/aCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0045900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	80	219	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	166	255	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
STK40	83931	MSKCC	GRCh37	1	36809479	36809479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	53	292	0	ENST00000373129.3:c.986G>T	p.Ser329Ile	p.S329I	ENST00000373129	NM_032017.1	329	aGt/aTt																																																																														
APC	324	MSKCC	GRCh37	5	112173964	112173964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	35	172	0	ENST00000257430.4:c.2673G>T	p.Met891Ile	p.M891I	ENST00000257430	NM_000038.5	891	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0045901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	116	525	1	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	422	636	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900410	3900410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	441	664	0	ENST00000262367.5:c.686del	p.Pro229GlnfsTer15	p.P229Qfs*15	ENST00000262367	NM_004380.2	229	cCa/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0045909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	132	702	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128199873	128199873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780263343		P-0045909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	45	500	0	ENST00000341105.2:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000341105	NM_032638.4	478	Gcc/Acc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81891957	81891957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	24	402	0	ENST00000359376.3:c.427G>A	p.Glu143Lys	p.E143K	ENST00000359376	NM_002661.3	143	Gag/Aag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660789	227660789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	35	535	0	ENST00000305123.5:c.2666A>G	p.Glu889Gly	p.E889G	ENST00000305123	NM_005544.2	889	gAg/gGg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680644	88680644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	117	386	0	ENST00000360948.2:c.613A>G	p.Ser205Gly	p.S205G	ENST00000360948	NM_001012338.2	205	Agt/Ggt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0045508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	617	556	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5258061	5258061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	171	418	1	ENST00000357368.4:c.673C>T	p.Arg225Cys	p.R225C	ENST00000357368	NM_002850.3	225	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	83	660	4	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	57	316	4	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906786	50906786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	103	690	5	ENST00000440232.2:c.1174G>A	p.Val392Met	p.V392M	ENST00000440232	NM_002691.3	392	Gtg/Atg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893340	32893340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	77	340	3	ENST00000380152.3:c.194C>T	p.Pro65Leu	p.P65L	ENST00000380152		65	cCa/cTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638317	117638317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	57	350	0	ENST00000368508.3:c.6124C>T	p.Arg2042Trp	p.R2042W	ENST00000368508	NM_002944.2	2042	Cgg/Tgg																																																																														
MGA	23269	MSKCC	GRCh37	15	41962081	41962082	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	32	397	1	ENST00000219905.7:c.990dup	p.Asp331ArgfsTer9	p.D331Rfs*9	ENST00000219905	NM_001164273.1	330	cga/cgAa																																																																														
APC	324	MSKCC	GRCh37	5	112175587	112175632	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAA	ACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAA	-			P-0045580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	45	356	1	ENST00000257430.4:c.4303_4348del	p.Arg1435GlufsTer23	p.R1435Efs*23	ENST00000257430	NM_000038.5	1432	ccACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAA/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	177	489	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0045625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	340	235	0				ENST00000310581	NM_198253.2																																																																																
ELF3	1999	MSKCC	GRCh37	1	201983076	201983076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	110	566	1	ENST00000359651.3:c.925G>T	p.Glu309Ter	p.E309*	ENST00000359651		309	Gag/Tag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983098	201983098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	205	530	1	ENST00000359651.3:c.947G>T	p.Gly316Val	p.G316V	ENST00000359651		316	gGc/gTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106162567	106162567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	12	229	0	ENST00000380013.4:c.3481A>G	p.Arg1161Gly	p.R1161G	ENST00000380013	NM_001127208.2	1161	Aga/Gga																																																																														
HGF	3082	MSKCC	GRCh37	7	81339467	81339467	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	30	270	0	ENST00000222390.5:c.1537T>A	p.Tyr513Asn	p.Y513N	ENST00000222390	NM_000601.4	513	Tac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44894189	44894190	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0045625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	14	372	0	ENST00000377967.4:c.580_581dup	p.Leu194PhefsTer49	p.L194Ffs*49	ENST00000377967	NM_021140.2	193	gct/gcTTt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292430	15292430	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs150338460		P-0045626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	217	771	0	ENST00000263388.2:c.2749G>C	p.Gly917Arg	p.G917R	ENST00000263388	NM_000435.2	917	Gga/Cga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100096	157100110	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGGCGGCAGCA	GCGGCGGCGGCAGCA	-			P-0045626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	35	21	0	ENST00000346085.5:c.1035_1049del	p.Ala346_Ala350del	p.A346_A350del	ENST00000346085	NM_020732.3	345	GCGGCGGCGGCAGCA/-																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0045627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	60	492	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	29	255	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
STK11	6794	MSKCC	GRCh37	19	1218423	1218423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	25	390	3	ENST00000326873.7:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000326873	NM_000455.4	100	Caa/Taa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178097211	178097211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	26	251	1	ENST00000397062.3:c.503C>T	p.Ser168Phe	p.S168F	ENST00000397062	NM_006164.4	168	tCt/tTt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932275	36932275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	65	645	0	ENST00000361632.4:c.2194G>A	p.Asp732Asn	p.D732N	ENST00000361632		732	Gac/Aac																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246038	41246038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	20	428	0	ENST00000357654.3:c.1510C>T	p.Arg504Cys	p.R504C	ENST00000357654	NM_007294.3	504	Cgt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857250	9857250	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	34	455	0	ENST00000330684.3:c.4151C>G	p.Ser1384Trp	p.S1384W	ENST00000330684	NM_001134407.1	1384	tCg/tGg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246670516	246670516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	31	297	0	ENST00000388985.4:c.4G>C	p.Glu2Gln	p.E2Q	ENST00000388985		2	Gag/Cag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645381	67645381	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	19	309	0	ENST00000264010.4:c.646G>C	p.Glu216Gln	p.E216Q	ENST00000264010	NM_006565.3	216	Gag/Cag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872559	37872559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	44	394	0	ENST00000269571.5:c.1519G>C	p.Glu507Gln	p.E507Q	ENST00000269571		507	Gag/Cag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967829	18967829	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0045627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	71	668	0	ENST00000262803.5:c.1968G>T	p.Gln656His	p.Q656H	ENST00000262803	NM_002911.3	656	caG/caT																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123260385	123260385	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	23	572	0	ENST00000358487.5:c.1516G>C	p.Asp506His	p.D506H	ENST00000358487	NM_000141.4	506	Gac/Cac																																																																														
VHL	7428	MSKCC	GRCh37	3	10183753	10183753	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	70	774	0	ENST00000256474.2:c.222del	p.Ile75SerfsTer84	p.I75Sfs*84	ENST00000256474	NM_000551.3	74	gtC/gt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	176	368	1	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			613	408	1142	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			357	152	443	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257845	19257845	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			586	335	1213	0	ENST00000162023.5:c.541G>T	p.Gly181Cys	p.G181C	ENST00000162023		181	Ggc/Tgc																																																																														
MDM2	4193	MSKCC	GRCh37	12	69222562	69222562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			316	212	308	0	ENST00000462284.1:c.535G>T	p.Asp179Tyr	p.D179Y	ENST00000462284	NM_002392.5	179	Gat/Tat																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610405	10610405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			618	372	1159	0	ENST00000171111.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000171111	NM_203500.1	102	tCa/tTa																																																																														
BBC3	27113	MSKCC	GRCh37	19	47725025	47725025	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199804290		P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			633	383	1246	1	ENST00000449228.1:c.719C>T	p.Ser240Leu	p.S240L	ENST00000449228	NM_001127240.2	240	tCg/tTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230371	46230371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			245	198	266	0	ENST00000334344.6:c.706-1G>C		p.X236_splice	ENST00000334344	NM_152641.2	236																																																																															
HGF	3082	MSKCC	GRCh37	7	81346659	81346659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			272	91	322	0	ENST00000222390.5:c.1294G>T	p.Ala432Ser	p.A432S	ENST00000222390	NM_000601.4	432	Gca/Tca																																																																														
TET2	54790	MSKCC	GRCh37	4	106193820	106193820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			365	159	461	0	ENST00000380013.4:c.4282G>A	p.Glu1428Lys	p.E1428K	ENST00000380013	NM_001127208.2	1428	Gag/Aag																																																																														
EED	8726	MSKCC	GRCh37	11	85961469	85961469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			192	67	185	0	ENST00000263360.6:c.246C>G	p.Phe82Leu	p.F82L	ENST00000263360	NM_003797.3	82	ttC/ttG																																																																														
CCND3	896	MSKCC	GRCh37	6	41909282	41909282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			812	330	987	1	ENST00000372991.4:c.106G>A	p.Glu36Lys	p.E36K	ENST00000372991	NM_001760.3	36	Gag/Aag																																																																														
SDHA	6389	MSKCC	GRCh37	5	235260	235260	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			393	161	499	0	ENST00000264932.6:c.1066G>A	p.Gly356Ser	p.G356S	ENST00000264932	NM_004168.2	356	Ggc/Agc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163282	32163282	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	386	1258	0	ENST00000375023.3:c.5944C>T	p.Gln1982Ter	p.Q1982*	ENST00000375023	NM_004557.3	1982	Caa/Taa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243951	46243951	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			548	173	492	0	ENST00000334344.6:c.2045C>G	p.Ser682Ter	p.S682*	ENST00000334344	NM_152641.2	682	tCa/tGa																																																																														
ALK	238	MSKCC	GRCh37	2	29448360	29448360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			951	452	1211	2	ENST00000389048.3:c.3139G>A	p.Ala1047Thr	p.A1047T	ENST00000389048	NM_004304.4	1047	Gcc/Acc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472459	88472459	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			598	242	771	0	ENST00000360948.2:c.2096del	p.Gly699AlafsTer60	p.G699Afs*60	ENST00000360948	NM_001012338.2	699	gGc/gc																																																																														
NF1	4763	MSKCC	GRCh37	17	29679361	29679361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			489	164	570	1	ENST00000358273.4:c.7544G>T	p.Ser2515Ile	p.S2515I	ENST00000358273	NM_001042492.2	2515	aGt/aTt																																																																														
MET	4233	MSKCC	GRCh37	7	116414999	116414999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			625	260	734	0	ENST00000397752.3:c.3093G>T	p.Met1031Ile	p.M1031I	ENST00000397752	NM_000245.2	1031	atG/atT																																																																														
APC	324	MSKCC	GRCh37	5	112174248	112174248	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			334	109	335	0	ENST00000257430.4:c.2957A>G	p.Tyr986Cys	p.Y986C	ENST00000257430	NM_000038.5	986	tAt/tGt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026786	6026786	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			226	218	413	0	ENST00000265849.7:c.1610A>G	p.Glu537Gly	p.E537G	ENST00000265849	NM_000535.5	537	gAg/gGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087874	27087874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			603	261	743	0	ENST00000324856.7:c.2162-1G>T		p.X721_splice	ENST00000324856	NM_006015.4	721																																																																															
NRAS	4893	MSKCC	GRCh37	1	115251269	115251269	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			391	77	369	0	ENST00000369535.4:c.457G>C	p.Glu153Gln	p.E153Q	ENST00000369535	NM_002524.4	153	Gaa/Caa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725466	162725466	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			782	234	786	0	ENST00000367921.3:c.578C>G	p.Ser193Cys	p.S193C	ENST00000367921	NM_006182.2	193	tCt/tGt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943329	71943329	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			728	260	912	0	ENST00000298229.2:c.1661C>A	p.Ser554Ter	p.S554*	ENST00000298229	NM_001567.3	554	tCa/tAa																																																																														
CBL	867	MSKCC	GRCh37	11	119103173	119103173	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			519	178	559	1	ENST00000264033.4:c.211C>T	p.Gln71Ter	p.Q71*	ENST00000264033	NM_005188.3	71	Cag/Tag																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944797	31944797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			791	223	652	0	ENST00000340398.3:c.304G>T	p.Gly102Cys	p.G102C	ENST00000340398	NM_001013699.2	102	Ggt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420151	49420151	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			979	315	914	0	ENST00000301067.7:c.15598C>G	p.His5200Asp	p.H5200D	ENST00000301067	NM_003482.3	5200	Cat/Gat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445804	49445804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			1344	371	1248	0	ENST00000301067.7:c.1662G>T	p.Leu554Phe	p.L554F	ENST00000301067	NM_003482.3	554	ttG/ttT																																																																														
MDM2	4193	MSKCC	GRCh37	12	69222667	69222667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			545	394	633	0	ENST00000462284.1:c.640G>A	p.Glu214Lys	p.E214K	ENST00000462284	NM_002392.5	214	Gaa/Aaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609802	28609802	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			499	207	574	0	ENST00000241453.7:c.1427A>T	p.Glu476Val	p.E476V	ENST00000241453	NM_004119.2	476	gAa/gTa																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281252	49281252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			653	255	554	1	ENST00000282018.3:c.299G>A	p.Arg100Lys	p.R100K	ENST00000282018	NM_020377.2	100	aGa/aAa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434563	110434563	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			774	268	994	0	ENST00000375856.3:c.3838G>C	p.Asp1280His	p.D1280H	ENST00000375856	NM_003749.2	1280	Gac/Cac																																																																														
DICER1	23405	MSKCC	GRCh37	14	95556976	95556976	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			566	198	625	0	ENST00000343455.3:c.5628del	p.Lys1877ArgfsTer8	p.K1877Rfs*8	ENST00000343455	NM_177438.2	1876	ggG/gg																																																																														
BLM	641	MSKCC	GRCh37	15	91295016	91295016	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			128	42	119	0	ENST00000355112.3:c.800-1G>C		p.X267_splice	ENST00000355112	NM_000057.2	267																																																																															
BLM	641	MSKCC	GRCh37	15	91295091	91295091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			243	93	222	0	ENST00000355112.3:c.874G>C	p.Asp292His	p.D292H	ENST00000355112	NM_000057.2	292	Gat/Cat																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646396	23646396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			591	195	633	0	ENST00000261584.4:c.1471G>T	p.Ala491Ser	p.A491S	ENST00000261584	NM_024675.3	491	Gct/Tct																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89355016	89355016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			863	315	1064	0	ENST00000301030.4:c.664G>T	p.Ala222Ser	p.A222S	ENST00000301030	NM_001256183.1	222	Gct/Tct																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40364008	40364008	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			864	303	1088	0	ENST00000293328.3:c.1674C>G	p.Phe558Leu	p.F558L	ENST00000293328	NM_012448.3	558	ttC/ttG																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56801448	56801448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			373	104	527	0	ENST00000337432.4:c.952G>T	p.Asp318Tyr	p.D318Y	ENST00000337432	NM_058216.2	318	Gac/Tac																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222489	2222489	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			533	330	1174	0	ENST00000398665.3:c.3322del	p.Arg1108GlufsTer43	p.R1108Efs*43	ENST00000398665	NM_032482.2	1107	cgC/cg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5218802	5218802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			483	283	818	0	ENST00000357368.4:c.3931G>A	p.Asp1311Asn	p.D1311N	ENST00000357368	NM_002850.3	1311	Gac/Aac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221766	36221766	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs200571590		P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			885	329	989	0	ENST00000222270.7:c.5435C>T	p.Ser1812Leu	p.S1812L	ENST00000222270	NM_014727.1	1812	tCa/tTa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965250	25965250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			567	182	595	0	ENST00000435504.4:c.3956G>T	p.Ser1319Ile	p.S1319I	ENST00000435504		1319	aGc/aTc																																																																														
CASP8	841	MSKCC	GRCh37	2	202149922	202149922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			646	260	791	0	ENST00000358485.4:c.1363G>A	p.Glu455Lys	p.E455K	ENST00000358485	NM_001080125.1	455	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747109	40747109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			607	197	692	0	ENST00000373198.4:c.2973G>C	p.Trp991Cys	p.W991C	ENST00000373198	NM_133170.3	991	tgG/tgC																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790098	40790098	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs6130063		P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			734	232	896	0	ENST00000373198.4:c.2633G>T	p.Ser878Ile	p.S878I	ENST00000373198	NM_133170.3	878	aGc/aTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827947	40827948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			619	250	781	0	ENST00000373198.4:c.2480_2481insA	p.Thr828HisfsTer9	p.T828Hfs*9	ENST00000373198	NM_133170.3	827	acc/acAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100910	41100910	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			591	208	783	0	ENST00000373198.4:c.1446A>T	p.Glu482Asp	p.E482D	ENST00000373198	NM_133170.3	482	gaA/gaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41818310	41818310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			44	19	42	0	ENST00000373198.4:c.64G>T	p.Gly22Cys	p.G22C	ENST00000373198	NM_133170.3	22	Ggc/Tgc																																																																														
ERG	2078	MSKCC	GRCh37	21	39795478	39795478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			482	166	695	0	ENST00000288319.7:c.242C>A	p.Ser81Tyr	p.S81Y	ENST00000288319	NM_182918.3	81	tCt/tAt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713768	30713768	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			695	264	852	0	ENST00000359013.4:c.1168C>G	p.His390Asp	p.H390D	ENST00000359013	NM_001024847.2	390	Cac/Gac																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143324208	143324208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			291	95	348	0	ENST00000262992.4:c.256-1G>A		p.X86_splice	ENST00000262992	NM_001101669.1	86																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444386	50444386	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			452	166	531	1	ENST00000331340.3:c.316G>T	p.Gly106Ter	p.G106*	ENST00000331340	NM_006060.4	106	Gga/Tga																																																																														
PREX2	80243	MSKCC	GRCh37	8	69000041	69000041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044145-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			921	175	634	0	ENST00000288368.4:c.2110A>G	p.Arg704Gly	p.R704G	ENST00000288368	NM_024870.2	704	Aga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0044379-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	242	634	0	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
HIST3H3	8290	MSKCC	GRCh37	1	228612890	228612890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044379-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			802	597	824	0	ENST00000366696.1:c.137C>A	p.Thr46Lys	p.T46K	ENST00000366696	NM_003493.2	46	aCg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	73	135	0				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10274115	10274115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	104	317	1	ENST00000330684.3:c.154C>T	p.Arg52Ter	p.R52*	ENST00000330684	NM_001134407.1	52	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	182	264	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	182	264	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	182	264	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879583	37879583	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	12019	364	0	ENST00000269571.5:c.1958C>G	p.Ser653Cys	p.S653C	ENST00000269571		653	tCc/tGc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933735	36933735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	236	386	2	ENST00000361632.4:c.1664G>A	p.Gly555Glu	p.G555E	ENST00000361632		555	gGg/gAg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224470	53224470	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	422	155	0	ENST00000375401.3:c.3243G>A	p.Trp1081Ter	p.W1081*	ENST00000375401	NM_004187.3	1081	tgG/tgA																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780711	9780711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	67	270	0	ENST00000377346.4:c.1513G>C	p.Glu505Gln	p.E505Q	ENST00000377346	NM_005026.3	505	Gag/Cag																																																																														
YAP1	10413	MSKCC	GRCh37	11	101985061	101985061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	119	427	0	ENST00000282441.5:c.508G>A	p.Asp170Asn	p.D170N	ENST00000282441	NM_001130145.2	170	Gat/Aat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18443805	18443805	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	49	111	0	ENST00000266497.5:c.778C>G	p.His260Asp	p.H260D	ENST00000266497		260	Cat/Gat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426667	49426667	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	75	194	0	ENST00000301067.7:c.11821C>A	p.Gln3941Lys	p.Q3941K	ENST00000301067	NM_003482.3	3941	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7573964	7573964	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	101	377	0	ENST00000269305.4:c.1063G>C	p.Ala355Pro	p.A355P	ENST00000269305	NM_001126112.2	355	Gct/Cct																																																																														
UPF1	5976	MSKCC	GRCh37	19	18943139	18943139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	41	167	1	ENST00000262803.5:c.121C>A	p.Pro41Thr	p.P41T	ENST00000262803	NM_002911.3	41	Cct/Act																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524125	187524126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	82	323	0	ENST00000441802.2:c.11412_11413dup	p.Cys3805TyrfsTer29	p.C3805Yfs*29	ENST00000441802	NM_005245.3	3805	tgt/tATgt																																																																														
SESN1	27244	MSKCC	GRCh37	6	109315728	109315728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	72	292	0	ENST00000436639.2:c.1057C>G	p.Gln353Glu	p.Q353E	ENST00000436639	NM_014454.2	353	Cag/Gag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845334	151845334	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	239	264	0	ENST00000262189.6:c.13678C>T	p.Gln4560Ter	p.Q4560*	ENST00000262189	NM_170606.2	4560	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0045635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	20	298	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108141986	108141986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	22	365	0	ENST00000278616.4:c.2930G>T	p.Cys977Phe	p.C977F	ENST00000278616	NM_000051.3	977	tGt/tTt																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076754	72076754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	30	446	0	ENST00000357731.5:c.743C>A	p.Ala248Glu	p.A248E	ENST00000357731	NM_173808.2	248	gCa/gAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542258	187542258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	18	337	0	ENST00000441802.2:c.5482G>C	p.Ala1828Pro	p.A1828P	ENST00000441802	NM_005245.3	1828	Gct/Cct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398287	+	missense_variant	Missense_Mutation	ONP	CCAG	CCAG	TCAA			P-0045635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	44	322	0	ENST00000256078.4:c.32_35delinsTTGA	p.Ala11_Gly12delinsValAsp	p.A11_G12delinsVD	ENST00000256078	NM_033360.2	11	gCTGGt/gTTGAt																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	317	481	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	161	431	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	222	597	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
SYK	6850	MSKCC	GRCh37	9	93641221	93641221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	40	304	0	ENST00000375746.1:c.1567G>A	p.Glu523Lys	p.E523K	ENST00000375746	NM_001174167.1	523	Gaa/Aaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70412256	70412256	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	22	169	0	ENST00000373644.4:c.4368-2A>T		p.X1456_splice	ENST00000373644	NM_030625.2	1456																																																																															
PGR	5241	MSKCC	GRCh37	11	100999450	100999450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	235	897	0	ENST00000325455.5:c.352C>A	p.Leu118Met	p.L118M	ENST00000325455	NM_001202474.3	118	Ctg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443670	49443670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	168	683	0	ENST00000301067.7:c.3701G>T	p.Gly1234Val	p.G1234V	ENST00000301067	NM_003482.3	1234	gGg/gTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133220147	133220147	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	168	569	0	ENST00000320574.5:c.4291-1G>T		p.X1431_splice	ENST00000320574	NM_006231.2	1431																																																																															
AXL	558	MSKCC	GRCh37	19	41754479	41754479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	306	680	0	ENST00000301178.4:c.1598G>T	p.Arg533Leu	p.R533L	ENST00000301178	NM_021913.4	533	cGg/cTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023771	31023771	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	207	626	0	ENST00000375687.4:c.3256G>T	p.Glu1086Ter	p.E1086*	ENST00000375687	NM_015338.5	1086	Gag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127281	55127282	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	54	380	0	ENST00000257290.5:c.69_70delinsAA	p.Cys23_Gln24delinsTer	p.C23_Q24delins*	ENST00000257290	NM_006206.4	23	tgCCag/tgAAag																																																																														
TERT	7015	MSKCC	GRCh37	5	1278901	1278901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	192	608	0	ENST00000310581.5:c.2141C>A	p.Thr714Lys	p.T714K	ENST00000310581	NM_198253.2	714	aCg/aAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38942465	38942465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	41	338	0	ENST00000357387.3:c.5068G>A	p.Glu1690Lys	p.E1690K	ENST00000357387	NM_152756.3	1690	Gag/Aag																																																																														
SMO	6608	MSKCC	GRCh37	7	128845471	128845471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	191	664	0	ENST00000249373.3:c.768G>T	p.Trp256Cys	p.W256C	ENST00000249373	NM_005631.4	256	tgG/tgT																																																																														
PREX2	80243	MSKCC	GRCh37	8	68939469	68939469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	35	297	0	ENST00000288368.4:c.454C>T	p.Leu152Phe	p.L152F	ENST00000288368	NM_024870.2	152	Ctt/Ttt																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864337	117864337	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0045636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	73	292	0	ENST00000297338.2:c.1322-2A>T		p.X441_splice	ENST00000297338	NM_006265.2	441																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	177	633	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0045637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	42	225	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944264	81944264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	159	736	0	ENST00000359376.3:c.1873G>A	p.Ala625Thr	p.A625T	ENST00000359376	NM_002661.3	625	Gcc/Acc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201833	66201833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	35	305	0	ENST00000273854.3:c.2669C>T	p.Ala890Val	p.A890V	ENST00000273854	NM_004439.5	890	gCg/gTg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441625	6441625	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	27	571	0	ENST00000356142.4:c.472T>G	p.Tyr158Asp	p.Y158D	ENST00000356142	NM_018890.3	158	Tat/Gat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8338970	8338970	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	77	382	0	ENST00000356435.5:c.5331C>A	p.Tyr1777Ter	p.Y1777*	ENST00000356435		1777	taC/taA																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045143	47045143	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	15	308	0	ENST00000329236.7:c.2150A>G	p.His717Arg	p.H717R	ENST00000329236	NM_001204466.1	717	cAc/cGc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	57	162	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779811	135779811	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	11	261	0	ENST00000298552.3:c.2028G>A	p.Trp676Ter	p.W676*	ENST00000298552	NM_001162426.1	676	tgG/tgA																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637537	52637538	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0045638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	56	242	0	ENST00000394830.3:c.2778_2779delAG	p.Glu927SerfsTer2	p.E927Sfs*2	ENST00000394830	NM_018313.4	926	agAGaa/agaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	263	595	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187141	38187141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	210	718	0	ENST00000317025.8:c.1336G>C	p.Glu446Gln	p.E446Q	ENST00000317025	NM_023034.1	446	Gaa/Caa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0045642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	35	285	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424075	49424075	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	168	696	0	ENST00000301067.7:c.13987del	p.Arg4663GlyfsTer3	p.R4663Gfs*3	ENST00000301067	NM_003482.3	4663	Agg/gg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527913	157527913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	114	484	0	ENST00000346085.5:c.5638G>A	p.Val1880Ile	p.V1880I	ENST00000346085	NM_020732.3	1880	Gtc/Atc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99459340	99459340	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs45451896		P-0045643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	48	340	0	ENST00000268035.6:c.1976G>T	p.Arg659Leu	p.R659L	ENST00000268035	NM_000875.3	659	cGg/cTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256162	41256162	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	88	440	0	ENST00000357654.3:c.418A>T	p.Ser140Cys	p.S140C	ENST00000357654	NM_007294.3	140	Agt/Tgt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46611785	46611785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	93	561	0	ENST00000263734.3:c.2599G>T	p.Asp867Tyr	p.D867Y	ENST00000263734	NM_001430.4	867	Gac/Tac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629834	187629834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	76	546	0	ENST00000441802.2:c.1148A>G	p.Asn383Ser	p.N383S	ENST00000441802	NM_005245.3	383	aAc/aGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157431632	157431635	+	frameshift_variant	Frame_Shift_Del	DEL	GGGA	GGGA	TCC			P-0045643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	64	414	2	ENST00000346085.5:c.2308_2311delinsTCC	p.Gly770SerfsTer12	p.G770Sfs*12	ENST00000346085	NM_020732.3	770	GGGAgc/TCCgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	242	397	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248621	10248621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	45	838	0	ENST00000340748.4:c.4132C>T	p.Arg1378Trp	p.R1378W	ENST00000340748		1378	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	350	862	0	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138137	64138137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	321	842	0	ENST00000334205.4:c.2060C>T	p.Thr687Met	p.T687M	ENST00000334205	NM_003942.2	687	aCg/aTg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075446	8075446	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	54	305	0	ENST00000377482.5:c.126-2A>G		p.X42_splice	ENST00000377482	NM_018948.3	42																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31515270	31515270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	116	690	0	ENST00000344624.3:c.1115G>A	p.Trp372Ter	p.W372*	ENST00000344624		372	tGg/tAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47004897	47004897	+	intron_variant	Intron	SNP	G	G	A			P-0045644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	293	739	0	ENST00000377604.3:c.-126+13G>A		p.*42*	ENST00000377604	NM_001204468.1																																																																																
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0045645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	75	246	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821643	72821645	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0045645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	10	69	0	ENST00000268489.5:c.10530_10532del	p.Gly3512del	p.G3512del	ENST00000268489	NM_006885.3	3510	ggCGGt/ggt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279579	18279579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	43	428	0	ENST00000222254.8:c.1852G>A	p.Glu618Lys	p.E618K	ENST00000222254	NM_005027.3	618	Gag/Aag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061213	38061213	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	44	514	0	ENST00000250448.2:c.776A>C	p.Tyr259Ser	p.Y259S	ENST00000250448	NM_004496.3	259	tAc/tCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	338	586	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	132	361	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788671	3788671	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0045669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	103	311	0	ENST00000262367.5:c.4283del	p.Arg1428LeufsTer31	p.R1428Lfs*31	ENST00000262367	NM_004380.2	1428	cGt/ct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941844	44941853	+	frameshift_variant	Frame_Shift_Del	DEL	TCATAAAGAC	TCATAAAGAC	-			P-0045669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	87	163	0	ENST00000377967.4:c.3168_3177del	p.His1057ThrfsTer23	p.H1057Tfs*23	ENST00000377967	NM_021140.2	1056	caTCATAAAGAC/ca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	493	553	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0045670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	75	626	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	49	436	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	38	335	6	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
CCND1	595	MSKCC	GRCh37	11	69466022	69466022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	313	886	0	ENST00000227507.2:c.860C>T	p.Pro287Leu	p.P287L	ENST00000227507	NM_053056.2	287	cCc/cTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	147	559	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	291	477	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266107	41266107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	59	303	0	ENST00000349496.5:c.104T>G	p.Ile35Ser	p.I35S	ENST00000349496	NM_001904.3	35	aTc/aGc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	210	841	3	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	25	337	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	107	432	3	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25991736	25991736	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	35	280	0	ENST00000435504.4:c.506C>T	p.Ala169Val	p.A169V	ENST00000435504		169	gCg/gTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830902	72830903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	131	550	1	ENST00000268489.5:c.5677_5678dup	p.Asp1894GlyfsTer21	p.D1894Gfs*21	ENST00000268489	NM_006885.3	1893	agg/agAGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	57	695	0	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																														
ATR	545	MSKCC	GRCh37	3	142277511	142277511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	20	291	0	ENST00000350721.4:c.1840G>A	p.Ala614Thr	p.A614T	ENST00000350721	NM_001184.3	614	Gcc/Acc																																																																														
CDH1	999	MSKCC	GRCh37	16	68847249	68847249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	33	415	1	ENST00000261769.5:c.1171G>A	p.Val391Ile	p.V391I	ENST00000261769	NM_004360.3	391	Gtc/Atc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196492	67196492	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	54	493	0	ENST00000312629.5:c.118G>T	p.Glu40Ter	p.E40*	ENST00000312629	NM_003952.2	40	Gag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660541	67660560	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTCATCCAGCATCAGAA	GCCCTCATCCAGCATCAGAA	-			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	162	449	0	ENST00000264010.4:c.1442_1461del	p.Ala481ValfsTer5	p.A481Vfs*5	ENST00000264010	NM_006565.3	481	GCCCTCATCCAGCATCAGAAg/g																																																																														
AXL	558	MSKCC	GRCh37	19	41745144	41745144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	105	695	0	ENST00000301178.4:c.1210G>A	p.Val404Met	p.V404M	ENST00000301178	NM_021913.4	404	Gtg/Atg																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181951	38181951	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	189	509	0	ENST00000396334.3:c.575T>A	p.Ile192Asn	p.I192N	ENST00000396334	NM_002468.4	192	aTc/aAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249483	153249483	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	66	431	0	ENST00000281708.4:c.1295A>G	p.Asn432Ser	p.N432S	ENST00000281708	NM_033632.3	432	aAc/aGc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637807	176637807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	107	505	0	ENST00000439151.2:c.2411del	p.Pro804GlnfsTer3	p.P804Qfs*3	ENST00000439151	NM_022455.4	803	Ccc/cc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016263	150016263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	26	391	0	ENST00000253339.5:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000253339		148	cGa/cAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953070	2953070	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	274	900	0	ENST00000396946.4:c.2870del	p.Asn957ThrfsTer108	p.N957Tfs*108	ENST00000396946	NM_032415.4	957	aAc/ac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	60	474	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0045816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	304	883	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	180	661	0	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053343	37053343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	74	390	0	ENST00000231790.2:c.578C>T	p.Ser193Leu	p.S193L	ENST00000231790	NM_000249.3	193	tCa/tTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045003	47045003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	275	577	0	ENST00000329236.7:c.2095C>T	p.His699Tyr	p.H699Y	ENST00000329236	NM_001204466.1	699	Cac/Tac																																																																														
RB1	5925	MSKCC	GRCh37	13	48934223	48934227	+	frameshift_variant	Frame_Shift_Del	DEL	TATTA	TATTA	-			P-0045816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	136	483	0	ENST00000267163.4:c.678_682del	p.Phe226LeufsTer13	p.F226Lfs*13	ENST00000267163	NM_000321.2	226	ttTATTAaa/ttaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546866	9546866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	132	623	0	ENST00000353224.5:c.1156C>A	p.Pro386Thr	p.P386T	ENST00000353224	NM_177990.2	386	Ccc/Acc																																																																														
TET2	54790	MSKCC	GRCh37	4	106157284	106157284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	37	479	0	ENST00000380013.4:c.2185C>G	p.Gln729Glu	p.Q729E	ENST00000380013	NM_001127208.2	729	Caa/Gaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295311	1295311	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	95	695	0				ENST00000310581	NM_198253.2																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67576382	67576382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	11	316	0	ENST00000274335.5:c.661C>T	p.Gln221Ter	p.Q221*	ENST00000274335		221	Cag/Tag																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575526	64575526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	465	910	0	ENST00000337652.1:c.506C>T	p.Ala169Val	p.A169V	ENST00000337652	NM_130803.2	169	gCc/gTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692994	89693017	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCAGAGACAAAAAGGTAAGTTAT	ACCAGAGACAAAAAGGTAAGTTAT	-			P-0045817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	109	482	0	ENST00000371953.3:c.478_492+9del		p.X160_splice	ENST00000371953	NM_000314.4	160																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72830406	72830406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	111	364	3	ENST00000268489.5:c.6175G>A	p.Ala2059Thr	p.A2059T	ENST00000268489	NM_006885.3	2059	Gcg/Acg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	420092	420092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	197	601	2	ENST00000399788.2:c.3175C>T	p.Arg1059Trp	p.R1059W	ENST00000399788	NM_001042603.1	1059	Cgg/Tgg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120795623	120795628	+	inframe_deletion	In_Frame_Del	DEL	TTGTTG	TTGTTG	-			P-0045819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	290	388	11	ENST00000257552.2:c.525_530del	p.Asn175_Asn176del	p.N175_N176del	ENST00000257552	NM_002442.3	175	aaCAACAAa/aaa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061612	38061612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	315	584	15	ENST00000250448.2:c.377G>T	p.Gly126Val	p.G126V	ENST00000250448	NM_004496.3	126	gGc/gTc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641709	23641709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	120	487	3	ENST00000261584.4:c.1766C>T	p.Thr589Met	p.T589M	ENST00000261584	NM_024675.3	589	aCg/aTg																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186505661	186505661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	106	296	5	ENST00000323963.5:c.1069T>C	p.Tyr357His	p.Y357H	ENST00000323963		357	Tat/Cat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391045	139391055	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCTGCACCA	GGTCTGCACCA	-			P-0045819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	188	1224	6	ENST00000277541.6:c.7136_7146del	p.Leu2379ProfsTer124	p.L2379Pfs*124	ENST00000277541	NM_017617.3	2379	cTGGTGCAGACC/c																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	13	346	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145431	58145431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	19	627	0	ENST00000257904.6:c.70C>T	p.Arg24Cys	p.R24C	ENST00000257904	NM_000075.3	24	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	117	419	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0045821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	19	971	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
MET	4233	MSKCC	GRCh37	7	116340047	116340047	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	76	316	0	ENST00000397752.3:c.909G>C	p.Lys303Asn	p.K303N	ENST00000397752	NM_000245.2	303	aaG/aaC																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980347	201980347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	305	842	0	ENST00000359651.3:c.83C>A	p.Ser28Tyr	p.S28Y	ENST00000359651		28	tCt/tAt																																																																														
CALR	811	MSKCC	GRCh37	19	13049522	13049546	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCCTCGGCCTGGCCGTCGCCGA	GCCTCCTCGGCCTGGCCGTCGCCGA	-			P-0045821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	307	969	0	ENST00000316448.5:c.33_57del	p.Leu12ProfsTer78	p.L12Pfs*78	ENST00000316448	NM_004343.3	10	gGCCTCCTCGGCCTGGCCGTCGCCGAg/gg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46275985	46275985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	176	550	0	ENST00000371998.3:c.3421C>G	p.Gln1141Glu	p.Q1141E	ENST00000371998		1141	Cag/Gag																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754893	57754893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	42	315	0	ENST00000274289.3:c.297G>T	p.Met99Ile	p.M99I	ENST00000274289	NM_006622.3	99	atG/atT																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075605	8075625	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCGGCCATTATGTAGAAA	GGCTCGGCCATTATGTAGAAA	TC			P-0045821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	68	521	2	ENST00000377482.5:c.55_75delinsGA	p.Phe19GlufsTer5	p.F19Efs*5	ENST00000377482	NM_018948.3	19	TTTCTACATAATGGCCGAGCC/GA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	73	397	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63526104	63526104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	196	672	1	ENST00000307078.5:c.2522G>A	p.Arg841Gln	p.R841Q	ENST00000307078	NM_004655.3	841	cGg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	367	891	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	165	984	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143114322	143114322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	105	429	0	ENST00000262992.4:c.1099G>A	p.Gly367Arg	p.G367R	ENST00000262992	NM_001101669.1	367	Gga/Aga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	230	959	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	22	794	1	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100420	8100420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	82	1008	0	ENST00000346208.3:c.394G>A	p.Val132Ile	p.V132I	ENST00000346208		132	Gtc/Atc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	153	812	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532654	63532654	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	200	786	4	ENST00000307078.5:c.1925del	p.Lys642ArgfsTer47	p.K642Rfs*47	ENST00000307078	NM_004655.3	642	aAg/ag																																																																														
CBL	867	MSKCC	GRCh37	11	119142446	119142446	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	82	354	0	ENST00000264033.4:c.445C>T	p.Arg149Ter	p.R149*	ENST00000264033	NM_005188.3	149	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735467	40735467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	165	768	0	ENST00000373198.4:c.3406C>T	p.Arg1136Cys	p.R1136C	ENST00000373198	NM_133170.3	1136	Cgt/Tgt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509082	106509082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144565710		P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	176	710	2	ENST00000359195.3:c.1076G>A	p.Arg359His	p.R359H	ENST00000359195	NM_002649.2	359	cGc/cAc																																																																														
TP63	8626	MSKCC	GRCh37	3	189526170	189526170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	218	708	2	ENST00000264731.3:c.434C>T	p.Ala145Val	p.A145V	ENST00000264731	NM_003722.4	145	gCg/gTg																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	138	563	2	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871060	12871070	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGTGCCTGC	AAGGTGCCTGC	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	88	405	0	ENST00000228872.4:c.295_305delTGCAAGGTGCC	p.Cys99GlyfsTer22	p.C99Gfs*22	ENST00000228872	NM_004064.3	96	aAAGGTGCCTGC/a																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	145	571	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424178	49424178	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	27	420	3	ENST00000301067.7:c.13884delC	p.Thr4629ProfsTer11	p.T4629Pfs*11	ENST00000301067	NM_003482.3	4628	ccC/cc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344955	118344955	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	21	257	1	ENST00000534358.1:c.3086delA	p.Lys1029ArgfsTer65	p.K1029Rfs*65	ENST00000534358	NM_005933.3	1027	ctA/ct																																																																														
BARD1	580	MSKCC	GRCh37	2	215610468	215610468	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	101	362	0	ENST00000260947.4:c.1788delA	p.Lys596AsnfsTer9	p.K596Nfs*9	ENST00000260947	NM_000465.2	596	aaA/aa																																																																														
RARA	5914	MSKCC	GRCh37	17	38511598	38511598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	198	825	0	ENST00000254066.5:c.1096C>T	p.Arg366Trp	p.R366W	ENST00000254066	NM_000964.3	366	Cgg/Tgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69012017	69012017	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	117	621	0	ENST00000288368.4:c.2654T>C	p.Phe885Ser	p.F885S	ENST00000288368	NM_024870.2	885	tTc/tCc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129350	64129350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	99	847	1	ENST00000334205.4:c.782T>C	p.Phe261Ser	p.F261S	ENST00000334205	NM_003942.2	261	tTc/tCc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164839	36164839	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	246	1073	1	ENST00000300305.3:c.1036del	p.Arg346AlafsTer248	p.R346Afs*248	ENST00000300305		346	Cgc/gc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748089	41748089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	10	89	0	ENST00000226382.2:c.680C>T	p.Ala227Val	p.A227V	ENST00000226382	NM_003924.3	227	gCg/gTg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001241	150001241	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	99	524	1	ENST00000253339.5:c.2363del	p.Gly788ValfsTer3	p.G788Vfs*3	ENST00000253339		788	gGt/gt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505431	25505431	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	147	803	0	ENST00000264709.3:c.327delG	p.Gln110ArgfsTer52	p.Q110Rfs*52	ENST00000264709	NM_175629.2	109	ggG/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106805	27106805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	183	792	1	ENST00000324856.7:c.6416C>A	p.Pro2139His	p.P2139H	ENST00000324856	NM_006015.4	2139	cCc/cAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533094	63533094	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	164	859	2	ENST00000307078.5:c.1800del	p.Gly601AlafsTer88	p.G601Afs*88	ENST00000307078	NM_004655.3	600	ccC/cc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115269643	115269643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	58	671	0	ENST00000438362.2:c.1563G>T	p.Lys521Asn	p.K521N	ENST00000438362	NM_001242891.1	521	aaG/aaT																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724540	112724540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	132	586	0	ENST00000369452.4:c.424G>A	p.Val142Met	p.V142M	ENST00000369452	NM_007373.3	142	Gtg/Atg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741651	17741651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	158	615	0	ENST00000250003.3:c.322G>A	p.Ala108Thr	p.A108T	ENST00000250003	NM_002478.4	108	Gcc/Acc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127694	64127694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	212	995	2	ENST00000334205.4:c.187G>A	p.Ala63Thr	p.A63T	ENST00000334205	NM_003942.2	63	Gcc/Acc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118354983	118354983	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	140	488	0	ENST00000534358.1:c.4177del	p.Ile1393PhefsTer28	p.I1393Ffs*28	ENST00000534358	NM_005933.3	1391	cAa/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434747	49434747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	181	1022	0	ENST00000301067.7:c.6806C>A	p.Ser2269Tyr	p.S2269Y	ENST00000301067	NM_003482.3	2269	tCc/tAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57857554	57857554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	120	644	0	ENST00000228682.2:c.84del	p.Ser29ValfsTer49	p.S29Vfs*49	ENST00000228682	NM_005269.2	27	gCc/gc																																																																														
POLE	5426	MSKCC	GRCh37	12	133257788	133257788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	162	672	0	ENST00000320574.5:c.140G>A	p.Arg47Gln	p.R47Q	ENST00000320574	NM_006231.2	47	cGg/cAg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73352456	73352456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	134	525	1	ENST00000377767.4:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000377767	NM_014953.3	150	cGa/cAa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434549	110434549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	175	866	0	ENST00000375856.3:c.3852G>T	p.Trp1284Cys	p.W1284C	ENST00000375856	NM_003749.2	1284	tgG/tgT																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782289	56782289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	147	631	2	ENST00000308159.5:c.130C>T	p.Arg44Cys	p.R44C	ENST00000308159	NM_014669.4	44	Cgt/Tgt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644830	67644830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	143	545	1	ENST00000264010.4:c.95G>A	p.Gly32Asp	p.G32D	ENST00000264010	NM_006565.3	32	gGc/gAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968214	15968214	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	69	278	0	ENST00000268712.3:c.5071A>G	p.Arg1691Gly	p.R1691G	ENST00000268712	NM_006311.3	1691	Agg/Ggg																																																																														
CD79B	974	MSKCC	GRCh37	17	62007581	62007581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	139	823	1	ENST00000392795.3:c.286C>T	p.Arg96Cys	p.R96C	ENST00000392795	NM_001039933.1	96	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231450	5231450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	245	852	1	ENST00000357368.4:c.2026C>T	p.Pro676Ser	p.P676S	ENST00000357368	NM_002850.3	676	Ccg/Tcg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610502	10610502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	93	881	0	ENST00000171111.5:c.208C>A	p.Leu70Met	p.L70M	ENST00000171111	NM_203500.1	70	Ctg/Atg																																																																														
CASP8	841	MSKCC	GRCh37	2	202141624	202141624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	128	423	0	ENST00000358485.4:c.915del	p.Ala306HisfsTer24	p.A306Hfs*24	ENST00000358485	NM_001080125.1	304	gcA/gc																																																																														
EP300	2033	MSKCC	GRCh37	22	41548004	41548004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	68	681	0	ENST00000263253.7:c.2985G>T	p.Glu995Asp	p.E995D	ENST00000263253	NM_001429.3	995	gaG/gaT																																																																														
EP300	2033	MSKCC	GRCh37	22	41572825	41572825	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	66	785	2	ENST00000263253.7:c.5113del	p.Met1705TrpfsTer4	p.M1705Wfs*4	ENST00000263253	NM_001429.3	1704	Aaa/aa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480324	89480325	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	78	306	0	ENST00000336596.2:c.2163dup	p.Gln722SerfsTer36	p.Q722Sfs*36	ENST00000336596	NM_005233.5	721	att/aTtt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31464411	31464411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	175	767	1	ENST00000344624.3:c.2506C>T	p.Arg836Ter	p.R836*	ENST00000344624		836	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696683	176696683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	101	394	0	ENST00000439151.2:c.5384C>T	p.Pro1795Leu	p.P1795L	ENST00000439151	NM_022455.4	1795	cCa/cTa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057308	180057308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	108	885	0	ENST00000261937.6:c.430G>T	p.Asp144Tyr	p.D144Y	ENST00000261937	NM_182925.4	144	Gac/Tac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120774	94120774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	128	534	0	ENST00000369303.4:c.277G>T	p.Gly93Cys	p.G93C	ENST00000369303	NM_004440.3	93	Ggc/Tgc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94124454	94124457	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	68	455	0	ENST00000369303.4:c.126_129del	p.Thr43SerfsTer57	p.T43Sfs*57	ENST00000369303	NM_004440.3	42	caAACA/ca																																																																														
SESN1	27244	MSKCC	GRCh37	6	109308826	109308826	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	53	225	0	ENST00000436639.2:c.1577T>A	p.Val526Asp	p.V526D	ENST00000436639	NM_014454.2	526	gTt/gAt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6442031	6442031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	40	112	1	ENST00000356142.4:c.590G>A	p.Cys197Tyr	p.C197Y	ENST00000356142	NM_018890.3	197	tGc/tAc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367259	50367259	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	109	460	0	ENST00000331340.3:c.66T>A	p.Asp22Glu	p.D22E	ENST00000331340	NM_006060.4	22	gaT/gaA																																																																														
TEK	7010	MSKCC	GRCh37	9	27109591	27109591	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	166	635	0	ENST00000380036.4:c.3G>T	p.Met1?	p.M1?	ENST00000380036	NM_000459.3	1	atG/atT																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781484	135781484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	121	499	0	ENST00000298552.3:c.1481C>T	p.Ala494Val	p.A494V	ENST00000298552	NM_001162426.1	494	gCa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	41	525	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30686313	30686313	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	49	555	0	ENST00000359013.4:c.244A>T	p.Arg82Ter	p.R82*	ENST00000359013	NM_001024847.2	82	Aga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578212	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0045827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	12	811	1	ENST00000269305.4:c.637_638delinsT	p.Arg213TyrfsTer34	p.R213Yfs*34	ENST00000269305	NM_001126112.2	213	CGa/Ta																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	195	465	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	222	647	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																														
BARD1	580	MSKCC	GRCh37	2	215632303	215632303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	169	451	0	ENST00000260947.4:c.1471G>T	p.Gly491Trp	p.G491W	ENST00000260947	NM_000465.2	491	Ggg/Tgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069607	69069607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	28	381	0	ENST00000288368.4:c.4282G>T	p.Glu1428Ter	p.E1428*	ENST00000288368	NM_024870.2	1428	Gaa/Taa																																																																														
CASP8	841	MSKCC	GRCh37	2	202149917	202149917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	123	514	0	ENST00000358485.4:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000358485	NM_001080125.1	453	cCg/cTg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745987	162745987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	131	259	0	ENST00000367921.3:c.2110C>T	p.Leu704Phe	p.L704F	ENST00000367921	NM_006182.2	704	Ctt/Ttt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448631	89448631	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0045831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	96	415	0	ENST00000336596.2:c.1594+1G>C		p.X532_splice	ENST00000336596	NM_005233.5	532																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	401	365	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699369	47699369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	104	380	0	ENST00000347630.2:c.139G>A	p.Glu47Lys	p.E47K	ENST00000347630	NM_001007230.1	47	Gaa/Aaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576184	88576184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	262	663	0	ENST00000360948.2:c.1489G>A	p.Gly497Arg	p.G497R	ENST00000360948	NM_001012338.2	497	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770613	40770613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	155	415	0	ENST00000373198.4:c.2769G>A	p.Trp923Ter	p.W923*	ENST00000373198	NM_133170.3	923	tgG/tgA																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739734	41739734	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	256	644	0	ENST00000242208.4:c.239A>G	p.Lys80Arg	p.K80R	ENST00000242208	NM_002192.2	80	aAg/aGg																																																																														
ALK	238	MSKCC	GRCh37	2	29455225	29455225	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs61754865		P-0045836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	55	693	0	ENST00000389048.3:c.2577G>C	p.Glu859Asp	p.E859D	ENST00000389048	NM_004304.4	859	gaG/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	36	1181	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	292	788	0	ENST00000344626.4:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000344626	NM_003072.3	1192	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	75	445	0				ENST00000310581	NM_198253.2																																																																																
PMS2	5395	MSKCC	GRCh37	7	6048638	6048638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	332	781	0	ENST00000265849.7:c.13G>A	p.Glu5Lys	p.E5K	ENST00000265849	NM_000535.5	5	Gag/Aag																																																																														
FYN	2534	MSKCC	GRCh37	6	111983111	111983111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	137	618	0	ENST00000368678.4:c.1436G>A	p.Gly479Asp	p.G479D	ENST00000368678		479	gGc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426088	49426089	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	599	959	1	ENST00000301067.7:c.12399_12400del	p.Leu4134GlyfsTer33	p.L4134Gfs*33	ENST00000301067	NM_003482.3	4133	ctGCtg/cttg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060709	38060737	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTATTGCAGTGCCTGTTCGTATGCCTT	GAGTATTGCAGTGCCTGTTCGTATGCCTT	-			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	569	1232	0	ENST00000250448.2:c.1252_1280del	p.Lys418AlafsTer130	p.K418Afs*130	ENST00000250448	NM_004496.3	418	AAGGCATACGAACAGGCACTGCAATACTCg/g																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99192832	99192832	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	210	604	0	ENST00000268035.6:c.22G>C	p.Gly8Arg	p.G8R	ENST00000268035	NM_000875.3	8	Ggg/Cgg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830774	3830786	+	frameshift_variant	Frame_Shift_Del	DEL	TTCGTGCCAGCCT	TTCGTGCCAGCCT	-			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	164	537	0	ENST00000262367.5:c.1770_1782del	p.Lys590AsnfsTer11	p.K590Nfs*11	ENST00000262367	NM_004380.2	590	aaAGGCTGGCACGAA/aa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641038	23641038	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	113	713	0	ENST00000261584.4:c.2437A>G	p.Ile813Val	p.I813V	ENST00000261584	NM_024675.3	813	Att/Gtt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897351	78897351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	179	1084	0	ENST00000306801.3:c.2686C>T	p.Pro896Ser	p.P896S	ENST00000306801	NM_020761.2	896	Ccg/Tcg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11030601	11030601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	133	887	0	ENST00000327064.4:c.1155C>A	p.His385Gln	p.H385Q	ENST00000327064	NM_199141.1	385	caC/caA																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953154	17953154	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs200147096		P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	234	1042	0	ENST00000458235.1:c.832G>C	p.Gly278Arg	p.G278R	ENST00000458235	NM_000215.3	278	Ggc/Cgc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860781	45860781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	157	850	1	ENST00000391945.4:c.1328C>T	p.Ala443Val	p.A443V	ENST00000391945	NM_000400.3	443	gCc/gTc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99149925	99149925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	73	687	0	ENST00000074304.5:c.237C>G	p.Phe79Leu	p.F79L	ENST00000074304	NM_001134224.1	79	ttC/ttG																																																																														
CUL3	8452	MSKCC	GRCh37	2	225400359	225400359	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	91	218	0	ENST00000264414.4:c.265-1G>C		p.X89_splice	ENST00000264414	NM_003590.4	89																																																																															
BAP1	8314	MSKCC	GRCh37	3	52440393	52440393	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	208	575	1	ENST00000460680.1:c.660-1G>T		p.X220_splice	ENST00000460680	NM_004656.3	220																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442075	52442075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	500	673	0	ENST00000460680.1:c.274G>C	p.Ala92Pro	p.A92P	ENST00000460680	NM_004656.3	92	Gca/Cca																																																																														
KDR	3791	MSKCC	GRCh37	4	55955572	55955572	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	77	466	0	ENST00000263923.4:c.3373A>C	p.Met1125Leu	p.M1125L	ENST00000263923	NM_002253.2	1125	Atg/Ctg																																																																														
FAM175A	0	MSKCC	GRCh37	4	84384700	84384700	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	93	436	0	ENST00000321945.7:c.743del	p.Asn248ThrfsTer3	p.N248Tfs*3	ENST00000321945	NM_139076.2	248	aAc/ac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542645	187542645	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	225	478	0	ENST00000441802.2:c.5095T>A	p.Tyr1699Asn	p.Y1699N	ENST00000441802	NM_005245.3	1699	Tat/Aat																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751394	57751394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	91	390	0	ENST00000274289.3:c.1597G>A	p.Ala533Thr	p.A533T	ENST00000274289	NM_006622.3	533	Gct/Act																																																																														
MET	4233	MSKCC	GRCh37	7	116398560	116398560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	252	513	1	ENST00000397752.3:c.2150C>T	p.Ser717Leu	p.S717L	ENST00000397752	NM_000245.2	717	tCa/tTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044977	47044977	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	388	1035	0	ENST00000329236.7:c.2069T>A	p.Phe690Tyr	p.F690Y	ENST00000329236	NM_001204466.1	690	tTc/tAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	165	526	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	182	552	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856422	111856422	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	53	294	3	ENST00000341259.2:c.473A>C	p.His158Pro	p.H158P	ENST00000341259	NM_005475.2	158	cAc/cCc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52613209	52613209	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	127	447	1	ENST00000394830.3:c.3319G>T	p.Glu1107Ter	p.E1107*	ENST00000394830	NM_018313.4	1107	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0045875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	122	473	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115261337	115261337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	44	364	0	ENST00000438362.2:c.2384G>A	p.Arg795Gln	p.R795Q	ENST00000438362	NM_001242891.1	795	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29556321	29556322	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0045875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	169	431	0	ENST00000358273.4:c.2688_2689del	p.Asp896GlufsTer9	p.D896Efs*9	ENST00000358273	NM_001042492.2	896	gaTCgg/gagg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	175	335	0				ENST00000310581	NM_198253.2																																																																																
EPHA7	2045	MSKCC	GRCh37	6	94120377	94120377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	156	333	0	ENST00000369303.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000369303	NM_004440.3	225	tCc/tTc																																																																														
B2M	567	MSKCC	GRCh37	15	45007798	45007801	+	frameshift_variant	Frame_Shift_Del	DEL	TCTA	TCTA	-			P-0045876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	195	362	0	ENST00000558401.1:c.248_251delATCT	p.Tyr83SerfsTer19	p.Y83Sfs*19	ENST00000558401	NM_004048.2	82	tTCTAt/tt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115738	8115738	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	205	409	0	ENST00000346208.3:c.1084C>T	p.Gln362Ter	p.Q362*	ENST00000346208		362	Cag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244063	46244064	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0045876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	118	494	0	ENST00000334344.6:c.2157_2158delinsTT	p.Gln720Ter	p.Q720*	ENST00000334344	NM_152641.2	719	atCCag/atTTag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822445	72822445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	455	872	0	ENST00000268489.5:c.9730G>A	p.Glu3244Lys	p.E3244K	ENST00000268489	NM_006885.3	3244	Gaa/Aaa																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108242	8108242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	411	725	1	ENST00000585124.1:c.982C>T	p.Arg328Trp	p.R328W	ENST00000585124	NM_004217.3	328	Cgg/Tgg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983742	15983742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	274	512	0	ENST00000268712.3:c.3380A>G	p.Gln1127Arg	p.Q1127R	ENST00000268712	NM_006311.3	1127	cAa/cGa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730894	40730894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	625	649	0	ENST00000373198.4:c.3641G>A	p.Ser1214Asn	p.S1214N	ENST00000373198	NM_133170.3	1214	aGc/aAc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146601	185146601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	568	564	0	ENST00000265026.3:c.232G>A	p.Asp78Asn	p.D78N	ENST00000265026	NM_004721.4	78	Gac/Aac																																																																														
HGF	3082	MSKCC	GRCh37	7	81332028	81332028	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	326	306	0	ENST00000222390.5:c.2056A>T	p.Met686Leu	p.M686L	ENST00000222390	NM_000601.4	686	Atg/Ttg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509058	106509058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	152	609	2	ENST00000359195.3:c.1052C>T	p.Thr351Ile	p.T351I	ENST00000359195	NM_002649.2	351	aCc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	951	945	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
RB1	5925	MSKCC	GRCh37	13	49033905	49033905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	352	427	0	ENST00000267163.4:c.2042G>A	p.Trp681Ter	p.W681*	ENST00000267163	NM_000321.2	681	tGg/tAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827993	40827993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	282	554	0	ENST00000373198.4:c.2435G>A	p.Gly812Glu	p.G812E	ENST00000373198	NM_133170.3	812	gGa/gAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914236	32914236	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs4987117		P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	211	392	0	ENST00000380152.3:c.5744C>T	p.Thr1915Met	p.T1915M	ENST00000380152		1915	aCg/aTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641144	117641144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	238	637	0	ENST00000368508.3:c.5827G>A	p.Glu1943Lys	p.E1943K	ENST00000368508	NM_002944.2	1943	Gaa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142222283	142222283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	193	319	0	ENST00000350721.4:c.5209C>T	p.His1737Tyr	p.H1737Y	ENST00000350721	NM_001184.3	1737	Cat/Tat																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428227	33428227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	287	608	0	ENST00000335858.7:c.560C>T	p.Ser187Phe	p.S187F	ENST00000335858	NM_133629.2	187	tCc/tTc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22162107	22162107	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	185	370	1	ENST00000215832.6:c.148C>T	p.Arg50Ter	p.R50*	ENST00000215832	NM_002745.4	50	Cga/Tga																																																																														
LYN	4067	MSKCC	GRCh37	8	56912075	56912075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	221	605	0	ENST00000519728.1:c.1303G>A	p.Glu435Lys	p.E435K	ENST00000519728	NM_002350.3	435	Gaa/Aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604769	48604769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	191	398	0	ENST00000342988.3:c.1591C>T	p.Arg531Trp	p.R531W	ENST00000342988	NM_005359.5	531	Cgg/Tgg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244595	41244595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	196	578	0	ENST00000357654.3:c.2953C>T	p.Pro985Ser	p.P985S	ENST00000357654	NM_007294.3	985	Ccc/Tcc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528496	157528496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149978361		P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	207	655	1	ENST00000346085.5:c.6221C>T	p.Ser2074Leu	p.S2074L	ENST00000346085	NM_020732.3	2074	tCg/tTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7117074	7117074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	321	608	0	ENST00000302850.5:c.4142C>T	p.Pro1381Leu	p.P1381L	ENST00000302850	NM_000208.2	1381	cCt/cTt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36265222	36265222	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	40	177	0	ENST00000300305.3:c.97G>A	p.Asp33Asn	p.D33N	ENST00000300305		33	Gat/Aat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261251	16261251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	264	620	2	ENST00000375759.3:c.8516C>T	p.Pro2839Leu	p.P2839L	ENST00000375759	NM_015001.2	2839	cCg/cTg																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439622	51439622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	227	419	0	ENST00000262662.1:c.187C>T	p.Pro63Ser	p.P63S	ENST00000262662		63	Ccc/Tcc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074394	8074394	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	169	398	0	ENST00000377482.5:c.265A>C	p.Lys89Gln	p.K89Q	ENST00000377482	NM_018948.3	89	Aag/Cag																																																																														
SDHC	6391	MSKCC	GRCh37	1	161326502	161326502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	198	408	0	ENST00000367975.2:c.277C>T	p.Pro93Ser	p.P93S	ENST00000367975	NM_003001.3	93	Cct/Tct																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716113	243716113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	179	470	1	ENST00000263826.5:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000263826	NM_005465.4	361	Gaa/Aaa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860059	57860059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	342	869	0	ENST00000228682.2:c.799G>A	p.Glu267Lys	p.E267K	ENST00000228682	NM_005269.2	267	Gag/Aag																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784046	120784047	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	358	1062	1	ENST00000257552.2:c.938_939delinsTT	p.Pro313Leu	p.P313L	ENST00000257552	NM_002442.3	313	cCC/cTT																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784047	120784047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	358	1063	0	ENST00000257552.2:c.938C>T	p.Pro313Leu	p.P313L	ENST00000257552	NM_002442.3	313	cCc/cTc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066945	30066945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	168	363	0	ENST00000331968.5:c.2186G>A	p.Gly729Asp	p.G729D	ENST00000331968	NM_002742.2	729	gGt/gAt																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68878231	68878231	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	148	354	0	ENST00000487270.1:c.944C>G	p.Ser315Ter	p.S315*	ENST00000487270	NM_133509.3	315	tCa/tGa																																																																														
MGA	23269	MSKCC	GRCh37	15	41988707	41988707	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	126	427	0	ENST00000219905.7:c.1499C>G	p.Ser500Cys	p.S500C	ENST00000219905	NM_001164273.1	500	tCt/tGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822400	72822400	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	637	891	0	ENST00000268489.5:c.9775A>C	p.Lys3259Gln	p.K3259Q	ENST00000268489	NM_006885.3	3259	Aag/Cag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991733	72991733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	346	400	0	ENST00000268489.5:c.2312G>A	p.Gly771Glu	p.G771E	ENST00000268489	NM_006885.3	771	gGg/gAg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602385	10602385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	1077	957	0	ENST00000171111.5:c.1193C>T	p.Pro398Leu	p.P398L	ENST00000171111	NM_203500.1	398	cCc/cTc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182122	99182123	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	174	451	1	ENST00000074304.5:c.2187_2188delinsAA	p.Glu730Lys	p.E730K	ENST00000074304	NM_001134224.1	729	ctGGag/ctAAag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182123	99182123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	174	445	0	ENST00000074304.5:c.2188G>A	p.Glu730Lys	p.E730K	ENST00000074304	NM_001134224.1	730	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570061	212570063	+	missense_variant	Missense_Mutation	ONP	TCC	TCC	ATT			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	139	443	0	ENST00000342788.4:c.1178_1180delinsAAT	p.Arg393_Thr394delinsGlnSer	p.R393_T394delinsQS	ENST00000342788	NM_005235.2	393	cGGAca/cAATca																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750686	39750686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	115	269	0	ENST00000361337.2:c.2086G>A	p.Glu696Lys	p.E696K	ENST00000361337	NM_003286.2	696	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41527605	41527605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	249	477	0	ENST00000263253.7:c.1496C>T	p.Ser499Phe	p.S499F	ENST00000263253	NM_001429.3	499	tCt/tTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390904	89390904	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	100	283	0	ENST00000336596.2:c.971-1G>A		p.X324_splice	ENST00000336596	NM_005233.5	324																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528569	89528569	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	133	267	0	ENST00000336596.2:c.2869A>T	p.Thr957Ser	p.T957S	ENST00000336596	NM_005233.5	957	Acc/Tcc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55131181	55131181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	185	446	0	ENST00000257290.5:c.724G>A	p.Val242Met	p.V242M	ENST00000257290	NM_006206.4	242	Gtg/Atg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526432	31526432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	397	864	0	ENST00000344624.3:c.608A>T	p.His203Leu	p.H203L	ENST00000344624		203	cAt/cTt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514352	149514352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	256	538	0	ENST00000261799.4:c.592G>A	p.Glu198Lys	p.E198K	ENST00000261799	NM_002609.3	198	Gag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721562	176721562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	318	630	1	ENST00000439151.2:c.7193C>T	p.Pro2398Leu	p.P2398L	ENST00000439151	NM_022455.4	2398	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725505	117725505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	202	443	0	ENST00000368508.3:c.376G>A	p.Gly126Arg	p.G126R	ENST00000368508	NM_002944.2	126	Gga/Aga																																																																														
PARK2	0	MSKCC	GRCh37	6	162475202	162475202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	142	356	0	ENST00000366898.1:c.539C>T	p.Pro180Leu	p.P180L	ENST00000366898	NM_004562.2	180	cCa/cTa																																																																														
PARK2	0	MSKCC	GRCh37	6	162622286	162622286	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	108	358	0	ENST00000366898.1:c.413-2A>G		p.X138_splice	ENST00000366898	NM_004562.2	138																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50468038	50468038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	294	670	1	ENST00000331340.3:c.1273G>A	p.Gly425Arg	p.G425R	ENST00000331340	NM_006060.4	425	Ggg/Agg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964515	70964516	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	255	680	1	ENST00000276594.2:c.1512_1513delinsTT	p.Arg505Cys	p.R505C	ENST00000276594	NM_024504.3	504	ctCCgc/ctTTgc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981501	70981501	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200062567		P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	351	971	0	ENST00000276594.2:c.595G>A	p.Glu199Lys	p.E199K	ENST00000276594	NM_024504.3	199	Gag/Aag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741476	145741476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1343	420	1068	0	ENST00000428558.2:c.1027C>T	p.Pro343Ser	p.P343S	ENST00000428558	NM_004260.3	343	Cct/Tct																																																																														
NF2	4771	MSKCC	GRCh37	22	30050658	30050673	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GACCCCAGTGTTCACA	GACCCCAGTGTTCACA	TG			P-0045878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	26	491	1	ENST00000338641.4:c.460_475delinsTG	p.Asp154Ter	p.D154*	ENST00000338641	NM_000268.3	154	GACCCCAGTGTTCACAag/TGag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	247	536	1	ENST00000397062.3:c.241G>A	p.Gly81Ser	p.G81S	ENST00000397062	NM_006164.4	81	Ggt/Agt																																																																														
BRAF	673	MSKCC	GRCh37	7	140477854	140477854	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	159	457	0	ENST00000288602.6:c.1454T>G	p.Leu485Trp	p.L485W	ENST00000288602	NM_004333.4	485	tTg/tGg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115831	8115831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	191	650	0	ENST00000346208.3:c.1177C>A	p.Pro393Thr	p.P393T	ENST00000346208		393	Ccg/Acg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221908	1221947	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTGTGCCCAGCTGACAGGCTCCTCGCCGGCTTCTCCTCAG	CTGTGCCCAGCTGACAGGCTCCTCGCCGGCTTCTCCTCAG	-			P-0045880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	212	621	0	ENST00000326873.7:c.863-40_863-1del		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																															
E2F3	1871	MSKCC	GRCh37	6	20480084	20480084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	127	310	0	ENST00000346618.3:c.401G>A	p.Arg134Gln	p.R134Q	ENST00000346618	NM_001949.4	134	cGa/cAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619161	37619162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	212	564	0	ENST00000447079.4:c.839dup	p.Glu281GlyfsTer17	p.E281Gfs*17	ENST00000447079	NM_015083.1	279	-/A																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627610	37627610	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	183	491	0	ENST00000447079.4:c.1525A>T	p.Lys509Ter	p.K509*	ENST00000447079	NM_015083.1	509	Aaa/Taa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412708	63412708	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	240	283	0	ENST00000330258.3:c.459A>T	p.Lys153Asn	p.K153N	ENST00000330258	NM_152424.3	153	aaA/aaT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123202482	123202482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	11	170	0	ENST00000218089.9:c.2334C>G	p.Asn778Lys	p.N778K	ENST00000218089	NM_001042749.1	778	aaC/aaG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0045262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	18	206	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	114	223	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55602719	55602719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	141	347	0	ENST00000288135.5:c.2540C>T	p.Thr847Met	p.T847M	ENST00000288135	NM_000222.2	847	aCg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0045614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	37	576	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830806	72830807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	176	657	0	ENST00000268489.5:c.5774dupG	p.Gly1926TrpfsTer3	p.G1926Wfs*3	ENST00000268489	NM_006885.3	1925	ggt/ggGt																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166541	118166547	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAACG	ACCAACG	-			P-0045614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	76	385	0	ENST00000369448.3:c.1051_1057del	p.Thr351SerfsTer44	p.T351Sfs*44	ENST00000369448	NM_017709.3	351	ACCAACGtc/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	112	583	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	71	286	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048764	180048764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	68	723	1	ENST00000261937.6:c.1798G>A	p.Asp600Asn	p.D600N	ENST00000261937	NM_182925.4	600	Gat/Aat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034441	47034441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	45	552	1	ENST00000329236.7:c.295G>A	p.Val99Ile	p.V99I	ENST00000329236	NM_001204466.1	99	Gtc/Atc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031919	10031919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	52	439	1	ENST00000330684.3:c.904G>A	p.Ala302Thr	p.A302T	ENST00000330684	NM_001134407.1	302	Gct/Act																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575128	48575128	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	25	257	0	ENST00000342988.3:c.322G>T	p.Glu108Ter	p.E108*	ENST00000342988	NM_005359.5	108	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542923	187542923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	31	203	0	ENST00000441802.2:c.4817T>C	p.Ile1606Thr	p.I1606T	ENST00000441802	NM_005245.3	1606	aTt/aCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	41	478	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0045616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	54	396	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123353298	123353298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	52	561	0	ENST00000358487.5:c.34G>T	p.Val12Leu	p.V12L	ENST00000358487	NM_000141.4	12	Gtg/Ttg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138375072	138375072	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	23	352	0	ENST00000289153.2:c.2987A>C	p.His996Pro	p.H996P	ENST00000289153	NM_006219.2	996	cAt/cCt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143324119	143324119	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	14	189	0	ENST00000262992.4:c.344A>G	p.Tyr115Cys	p.Y115C	ENST00000262992	NM_001101669.1	115	tAt/tGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0045617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	161	264	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
ALK	238	MSKCC	GRCh37	2	29456533	29456538	+	inframe_deletion	In_Frame_Del	DEL	AATGCA	AATGCA	-			P-0045617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	89	382	0	ENST00000389048.3:c.2380_2385del	p.Cys794_Ile795del	p.C794_I795del	ENST00000389048	NM_004304.4	794	TGCATT/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	43	263	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	31	420	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0045619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	115	377	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0045619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	94	329	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0045619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	94	329	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0045619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	94	329	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	185	811	1	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562443	95562443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	82	434	0	ENST00000343455.3:c.4814C>G	p.Pro1605Arg	p.P1605R	ENST00000343455	NM_177438.2	1605	cCt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	169	333	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	244	548	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	86	699	1	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934713	49934713	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	278	570	0	ENST00000296474.3:c.2183G>T	p.Arg728Leu	p.R728L	ENST00000296474	NM_002447.2	728	cGg/cTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923710	39923710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	183	662	0	ENST00000378444.4:c.3381C>A	p.Ser1127Arg	p.S1127R	ENST00000378444	NM_001123385.1	1127	agC/agA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965567	15965567	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	51	184	0	ENST00000268712.3:c.5239C>G	p.Arg1747Gly	p.R1747G	ENST00000268712	NM_006311.3	1747	Cga/Gga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910843	114910843	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	127	416	0	ENST00000543371.1:c.962A>G	p.Gln321Arg	p.Q321R	ENST00000543371	NM_001198531.1	321	cAg/cGg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870848	12870854	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTCG	GCCCTCG	-			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	26	228	0	ENST00000228872.4:c.78_84del	p.Ser27AlafsTer13	p.S27Afs*13	ENST00000228872	NM_004064.3	25	aaGCCCTCG/aa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69230515	69230515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	57	269	0	ENST00000462284.1:c.904G>C	p.Glu302Gln	p.E302Q	ENST00000462284	NM_002392.5	302	Gaa/Caa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687519	37687519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	48	316	0	ENST00000447079.4:c.4423C>T	p.Pro1475Ser	p.P1475S	ENST00000447079	NM_015083.1	1475	Cct/Tct																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805384	46805384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	175	765	0	ENST00000290295.7:c.572C>T	p.Pro191Leu	p.P191L	ENST00000290295	NM_006361.5	191	cCa/cTa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610590	10610605	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCTTGCACTCAGTG	CGCCTTGCACTCAGTG	-			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	61	736	0	ENST00000171111.5:c.105_120del	p.Thr36ArgfsTer2	p.T36Rfs*2	ENST00000171111	NM_203500.1	35	tcCACTGAGTGCAAGGCG/tc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38314960	38314960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	174	652	1	ENST00000425967.3:c.104G>A	p.Trp35Ter	p.W35*	ENST00000425967	NM_001174067.1	35	tGg/tAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528761	8528761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	104	329	0	ENST00000356435.5:c.371G>C	p.Gly124Ala	p.G124A	ENST00000356435		124	gGc/gCc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11264678	11264678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	69	562	1	ENST00000361445.4:c.3884C>T	p.Ser1295Leu	p.S1295L	ENST00000361445	NM_004958.3	1295	tCa/tTa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16263968	16263968	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	86	712	0	ENST00000375759.3:c.10337C>G	p.Ser3446Cys	p.S3446C	ENST00000375759	NM_015001.2	3446	tCt/tGt																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46543223	46543223	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	55	387	0	ENST00000262741.5:c.278C>G	p.Ser93Ter	p.S93*	ENST00000262741	NM_003629.3	93	tCa/tGa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115269705	115269705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	31	335	0	ENST00000438362.2:c.1501G>A	p.Glu501Lys	p.E501K	ENST00000438362	NM_001242891.1	501	Gag/Aag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981298	201981298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	92	636	0	ENST00000359651.3:c.377G>C	p.Arg126Pro	p.R126P	ENST00000359651		126	cGa/cCa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94923077	94923077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	46	398	0	ENST00000536441.1:c.391G>C	p.Glu131Gln	p.E131Q	ENST00000536441	NM_144665.3	131	Gaa/Caa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524633	103524633	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	44	288	0	ENST00000355739.4:c.2764C>G	p.Gln922Glu	p.Q922E	ENST00000355739	NM_000123.3	922	Caa/Gaa																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40685693	40685693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	51	382	0	ENST00000249776.8:c.846G>A	p.Met282Ile	p.M282I	ENST00000249776	NM_033286.3	282	atG/atA																																																																														
RAD51	5888	MSKCC	GRCh37	15	41001249	41001249	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	78	339	0	ENST00000267868.3:c.370G>T	p.Glu124Ter	p.E124*	ENST00000267868	NM_002875.4	124	Gaa/Taa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858072	9858072	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	68	444	0	ENST00000330684.3:c.3329C>G	p.Ser1110Ter	p.S1110*	ENST00000330684	NM_001134407.1	1110	tCa/tGa																																																																														
CDH1	999	MSKCC	GRCh37	16	68835581	68835581	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	60	364	1	ENST00000261769.5:c.172G>T	p.Glu58Ter	p.E58*	ENST00000261769	NM_004360.3	58	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822696	72822696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	79	595	0	ENST00000268489.5:c.9479C>T	p.Pro3160Leu	p.P3160L	ENST00000268489	NM_006885.3	3160	cCt/cTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831279	72831279	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	51	404	0	ENST00000268489.5:c.5302C>T	p.Gln1768Ter	p.Q1768*	ENST00000268489	NM_006885.3	1768	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29683534	29683534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	33	234	0	ENST00000358273.4:c.7672G>A	p.Glu2558Lys	p.E2558K	ENST00000358273	NM_001042492.2	2558	Gaa/Aaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097180	11097180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	49	662	0	ENST00000344626.4:c.671C>T	p.Ser224Leu	p.S224L	ENST00000344626	NM_003072.3	224	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	169	580	0	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288514	15288514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	17	82	0	ENST00000263388.2:c.4225G>C	p.Gly1409Arg	p.G1409R	ENST00000263388	NM_000435.2	1409	Ggc/Cgc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794835	42794835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	70	643	0	ENST00000575354.2:c.1915G>A	p.Glu639Lys	p.E639K	ENST00000575354	NM_015125.3	639	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45858941	45858941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	197	554	0	ENST00000391945.4:c.1525G>C	p.Glu509Gln	p.E509Q	ENST00000391945	NM_000400.3	509	Gag/Cag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213369	39213369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	81	504	0	ENST00000402219.2:c.3598G>A	p.Asp1200Asn	p.D1200N	ENST00000402219	NM_005633.3	1200	Gac/Aac																																																																														
PAK7	0	MSKCC	GRCh37	20	9624798	9624798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	44	389	0	ENST00000353224.5:c.179C>T	p.Thr60Ile	p.T60I	ENST00000353224	NM_177990.2	60	aCa/aTa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264413	46264413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	37	315	0	ENST00000371998.3:c.1460G>T	p.Arg487Leu	p.R487L	ENST00000371998		487	cGt/cTt																																																																														
EP300	2033	MSKCC	GRCh37	22	41573437	41573437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	97	658	0	ENST00000263253.7:c.5722C>T	p.Pro1908Ser	p.P1908S	ENST00000263253	NM_001429.3	1908	Cca/Tca																																																																														
ATR	545	MSKCC	GRCh37	3	142178151	142178151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	66	251	0	ENST00000350721.4:c.7267G>C	p.Val2423Leu	p.V2423L	ENST00000350721	NM_001184.3	2423	Gta/Cta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916935	+	inframe_deletion	In_Frame_Del	DEL	GCAACC	GCAACC	-			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	96	349	0	ENST00000263967.3:c.318_323delCAACCG	p.Asn107_Arg108del	p.N107_R108del	ENST00000263967	NM_006218.2	106	gGCAACCgt/ggt																																																																														
KDR	3791	MSKCC	GRCh37	4	55955084	55955084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	58	393	0	ENST00000263923.4:c.3461C>T	p.Ser1154Leu	p.S1154L	ENST00000263923	NM_002253.2	1154	tCa/tTa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143352382	143352382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	64	478	0	ENST00000262992.4:c.31G>A	p.Glu11Lys	p.E11K	ENST00000262992	NM_001101669.1	11	Gaa/Aaa																																																																														
SDHA	6389	MSKCC	GRCh37	5	233727	233727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	85	620	1	ENST00000264932.6:c.1031C>A	p.Ser344Tyr	p.S344Y	ENST00000264932	NM_004168.2	344	tCt/tAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	21	151	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112174218	112174218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	40	268	0	ENST00000257430.4:c.2927G>C	p.Arg976Thr	p.R976T	ENST00000257430	NM_000038.5	976	aGa/aCa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20490417	20490417	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	46	365	0	ENST00000346618.3:c.1154C>G	p.Ser385Ter	p.S385*	ENST00000346618	NM_001949.4	385	tCa/tGa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287884	33287884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	61	529	0	ENST00000374542.5:c.1369G>A	p.Glu457Lys	p.E457K	ENST00000374542	NM_001141970.1	457	Gag/Aag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405796	157405796	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	37	290	0	ENST00000346085.5:c.2038G>A	p.Asp680Asn	p.D680N	ENST00000346085	NM_020732.3	680	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028127	69028127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	74	435	1	ENST00000288368.4:c.3286G>A	p.Asp1096Asn	p.D1096N	ENST00000288368	NM_024870.2	1096	Gat/Aat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135782747	135782748	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	55	316	0	ENST00000298552.3:c.1273_1274del	p.Met425GlyfsTer16	p.M425Gfs*16	ENST00000298552	NM_001162426.1	425	ATg/g																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226021	53226021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	115	410	0	ENST00000375401.3:c.2828G>A	p.Arg943Gln	p.R943Q	ENST00000375401	NM_004187.3	943	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	299	592	0	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc																																																																														
BTK	695	MSKCC	GRCh37	X	100625010	100625010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	283	429	0	ENST00000308731.7:c.367C>T	p.Arg123Trp	p.R123W	ENST00000308731	NM_000061.2	123	Cgg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29683557	29683558	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	168	252	0	ENST00000358273.4:c.7701dupC	p.Lys2568GlnfsTer9	p.K2568Qfs*9	ENST00000358273	NM_001042492.2	2565	-/C																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562908	95562909	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	156	228	0	ENST00000343455.3:c.4348dup	p.Ile1450AsnfsTer6	p.I1450Nfs*6	ENST00000343455	NM_177438.2	1450	atc/aAtc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25462078	25462078	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	251	386	0	ENST00000264709.3:c.2329C>G	p.Pro777Ala	p.P777A	ENST00000264709	NM_175629.2	777	Cct/Gct																																																																														
HGF	3082	MSKCC	GRCh37	7	81392170	81392170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	133	211	1	ENST00000222390.5:c.107G>T	p.Arg36Ile	p.R36I	ENST00000222390	NM_000601.4	36	aGa/aTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0045624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	34	266	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0045624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	24	183	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251991	8251991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	96	672	1	ENST00000335790.3:c.86G>A	p.Arg29His	p.R29H	ENST00000335790	NM_002315.2	29	cGc/cAc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851396	63851396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	66	423	0	ENST00000279873.7:c.2174G>T	p.Arg725Met	p.R725M	ENST00000279873	NM_032199.2	725	aGg/aTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120833	115120833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	114	309	0	ENST00000257566.3:c.173G>A	p.Gly58Asp	p.G58D	ENST00000257566	NM_016569.3	58	gGc/gAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	192	475	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
ALK	238	MSKCC	GRCh37	2	29456522	29456522	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	188	536	0	ENST00000389048.3:c.2396A>G	p.Asn799Ser	p.N799S	ENST00000389048	NM_004304.4	799	aAt/aGt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47035983	47035983	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0045667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	255	643	0	ENST00000329236.7:c.431del	p.Lys144SerfsTer45	p.K144Sfs*45	ENST00000329236	NM_001204466.1	144	Aag/ag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181765	56181765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	13	258	1	ENST00000399503.3:c.3989C>T	p.Ser1330Leu	p.S1330L	ENST00000399503	NM_005921.1	1330	tCg/tTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5238951	5238951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	28	546	1	ENST00000357368.4:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000357368	NM_002850.3	610	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101338	27101348	+	frameshift_variant	Frame_Shift_Del	DEL	CCACGAAGGCT	CCACGAAGGCT	-			P-0045672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	42	982	0	ENST00000324856.7:c.4621_4631del	p.His1541ValfsTer27	p.H1541Vfs*27	ENST00000324856	NM_006015.4	1540	aaCCACGAAGGCTcg/aacg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579482	7579482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	793	737	0	ENST00000269305.4:c.205del	p.Ala69LeufsTer54	p.A69Lfs*54	ENST00000269305	NM_001126112.2	69	Gct/ct																																																																														
XPO1	7514	MSKCC	GRCh37	2	61709603	61709616	+	frameshift_variant	Frame_Shift_Del	DEL	ATGATGTACTTATT	ATGATGTACTTATT	-			P-0045673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	117	228	0	ENST00000401558.2:c.2871_2884del	p.Lys957AsnfsTer8	p.K957Nfs*8	ENST00000401558	NM_003400.3	957	aaAATAAGTACATCATta/aata																																																																														
ACVR1	90	MSKCC	GRCh37	2	158617465	158617465	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	209	415	0	ENST00000263640.3:c.1191T>A	p.Asp397Glu	p.D397E	ENST00000263640	NM_001105.4	397	gaT/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	17	286	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266709	198266709	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0045674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	33	350	0	ENST00000335508.6:c.2223G>T	p.Lys741Asn	p.K741N	ENST00000335508	NM_012433.2	741	aaG/aaT																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	41	429	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	36	423	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0045723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	41	434	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715721	30715721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	32	259	1	ENST00000359013.4:c.1454G>T	p.Arg485Leu	p.R485L	ENST00000359013	NM_001024847.2	485	cGc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	579	465	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1400	39	294	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	79	215	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046357	69046357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	59	379	0	ENST00000288368.4:c.3830C>T	p.Ala1277Val	p.A1277V	ENST00000288368	NM_024870.2	1277	gCc/gTc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916505	39916505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	360	653	1	ENST00000378444.4:c.4498G>A	p.Ala1500Thr	p.A1500T	ENST00000378444	NM_001123385.1	1500	Gcc/Acc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193202184	193202184	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	89	264	0	ENST00000367435.3:c.1216C>T	p.Gln406Ter	p.Q406*	ENST00000367435	NM_024529.4	406	Caa/Taa																																																																														
WT1	7490	MSKCC	GRCh37	11	32450134	32450145	+	inframe_deletion	In_Frame_Del	DEL	GGGCGTCCCGTC	GGGCGTCCCGTC	-			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	72	585	0	ENST00000332351.3:c.667_678del	p.Asp223_Pro226del	p.D223_P226del	ENST00000332351	NM_024426.4	223	GACGGGACGCCC/-																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443985	49443985	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	309	641	0	ENST00000301067.7:c.3386A>T	p.Asp1129Val	p.D1129V	ENST00000301067	NM_003482.3	1129	gAt/gTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913540	32913540	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	182	307	0	ENST00000380152.3:c.5048A>T	p.Gln1683Leu	p.Q1683L	ENST00000380152		1683	cAg/cTg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647038	23647038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	358	547	0	ENST00000261584.4:c.829G>T	p.Asp277Tyr	p.D277Y	ENST00000261584	NM_024675.3	277	Gac/Tac																																																																														
NF1	4763	MSKCC	GRCh37	17	29676220	29676220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	278	259	0	ENST00000358273.4:c.7274del	p.Asn2425IlefsTer7	p.N2425Ifs*7	ENST00000358273	NM_001042492.2	2424	agA/ag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761171	59761171	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	96	437	1	ENST00000259008.2:c.3236T>G	p.Ile1079Ser	p.I1079S	ENST00000259008	NM_032043.2	1079	aTt/aGt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021662	31021662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	229	388	0	ENST00000375687.4:c.1661G>T	p.Ser554Ile	p.S554I	ENST00000375687	NM_015338.5	554	aGt/aTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480475	89480475	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	126	214	0	ENST00000336596.2:c.2312T>C	p.Leu771Pro	p.L771P	ENST00000336596	NM_005233.5	771	cTg/cCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1293677	1293677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2466	464	862	0	ENST00000310581.5:c.1324G>A	p.Asp442Asn	p.D442N	ENST00000310581	NM_198253.2	442	Gac/Aac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528525	157528525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	144	460	0	ENST00000346085.5:c.6250G>C	p.Glu2084Gln	p.E2084Q	ENST00000346085	NM_020732.3	2084	Gag/Cag																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22008835	22008835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	252	530	2	ENST00000276925.6:c.118C>A	p.Pro40Thr	p.P40T	ENST00000276925	NM_004936.3	40	Ccc/Acc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950061	44950061	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	62	339	0	ENST00000377967.4:c.3830T>C	p.Met1277Thr	p.M1277T	ENST00000377967	NM_021140.2	1277	aTg/aCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	32	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	100	564	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	102	703	1	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	21	197	2	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																														
APC	324	MSKCC	GRCh37	5	112175754	112175754	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	26	230	0	ENST00000257430.4:c.4463T>A	p.Leu1488Ter	p.L1488*	ENST00000257430	NM_000038.5	1488	tTa/tAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1293760	1293760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	79	1024	0	ENST00000310581.5:c.1241C>T	p.Pro414Leu	p.P414L	ENST00000310581	NM_198253.2	414	cCg/cTg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26970440	26970441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	12	34	0	ENST00000381527.3:c.815dup	p.Met273AspfsTer3	p.M273Dfs*3	ENST00000381527	NM_001260.1	270	ata/atAa																																																																														
APC	324	MSKCC	GRCh37	5	112174979	112174979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	17	170	0	ENST00000257430.4:c.3688C>T	p.Gln1230Ter	p.Q1230*	ENST00000257430	NM_000038.5	1230	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579702	7579703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	66	489	0	ENST00000269305.4:c.93dup	p.Leu32SerfsTer11	p.L32Sfs*11	ENST00000269305	NM_001126112.2	31	-/T																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662055	227662055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	33	599	0	ENST00000305123.5:c.1400G>T	p.Cys467Phe	p.C467F	ENST00000305123	NM_005544.2	467	tGc/tTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356317	66356317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	19	309	0	ENST00000273854.3:c.1180G>T	p.Ala394Ser	p.A394S	ENST00000273854	NM_004439.5	394	Gca/Tca																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178304	56178304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	22	212	0	ENST00000399503.3:c.3277G>A	p.Asp1093Asn	p.D1093N	ENST00000399503	NM_005921.1	1093	Gac/Aac																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554377	141554377	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	82	807	0	ENST00000220592.5:c.1774A>G	p.Ile592Val	p.I592V	ENST00000220592	NM_012154.3	592	Atc/Gtc																																																																														
EED	8726	MSKCC	GRCh37	11	85961337	85961337	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	46	125	0	ENST00000263360.6:c.115-1G>A		p.X39_splice	ENST00000263360	NM_003797.3	39																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212293167	212293167	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	61	232	0	ENST00000342788.4:c.2685del	p.Lys896AsnfsTer18	p.K896Nfs*18	ENST00000342788	NM_005235.2	895	agG/ag																																																																														
RB1	5925	MSKCC	GRCh37	13	49033890	49033890	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0045730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	289	243	0	ENST00000267163.4:c.2027T>G	p.Leu676Ter	p.L676*	ENST00000267163	NM_000321.2	676	tTa/tGa																																																																														
ATR	545	MSKCC	GRCh37	3	142281890	142281890	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	252	235	0	ENST00000350721.4:c.354del	p.Leu118PhefsTer47	p.L118Ffs*47	ENST00000350721	NM_001184.3	118	ttG/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	12	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0045732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	22	678	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591976	48591976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0045732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	11	196	0	ENST00000342988.3:c.1139G>C	p.Arg380Thr	p.R380T	ENST00000342988	NM_005359.5	380	aGg/aCg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200108	67200108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	104	525	0	ENST00000312629.5:c.495C>G	p.Ile165Met	p.I165M	ENST00000312629	NM_003952.2	165	atC/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	124	590	1	ENST00000269305.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000269305	NM_001126112.2	337	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591890	48591905	+	frameshift_variant	Frame_Shift_Del	DEL	TGGATACGTGGACCCT	TGGATACGTGGACCCT	-			P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	68	349	0	ENST00000342988.3:c.1054_1069del	p.Gly352LeufsTer27	p.G352Lfs*27	ENST00000342988	NM_005359.5	351	gaTGGATACGTGGACCCT/ga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030774	48030774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	47	257	0	ENST00000234420.5:c.3388G>A	p.Val1130Met	p.V1130M	ENST00000234420	NM_000179.2	1130	Gtg/Atg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441217	52441217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	58	340	0	ENST00000460680.1:c.553G>A	p.Gly185Arg	p.G185R	ENST00000460680	NM_004656.3	185	Ggg/Agg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	195	453	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460549	8460549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	80	311	0	ENST00000356435.5:c.3737A>G	p.Tyr1246Cys	p.Y1246C	ENST00000356435		1246	tAc/tGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039881	47039881	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	267	334	0	ENST00000329236.7:c.990del	p.Ala331ArgfsTer76	p.A331Rfs*76	ENST00000329236	NM_001204466.1	330	gcT/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	22	224	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	70	539	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50492536	50492537	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGCT			P-0045739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	69	523	0	ENST00000394963.4:c.1436_1440dup	p.Phe481LeufsTer28	p.F481Lfs*28	ENST00000394963	NM_003076.4	478	cga/cGAGCTga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880987	37880988	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTGATGGCTGCT			P-0045740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	132	510	0	ENST00000269571.5:c.2326_2327insCTGTGATGGCTG	p.Ala775_Gly776insAlaValMetAla	p.A775_G776insAVMA	ENST00000269571		772	-/GTGATGGCTGCT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295260	1295260	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	144	245	0				ENST00000310581	NM_198253.2																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			970	1010	495	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0013435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	597	268	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578443	7578444	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	660	604	2	ENST00000269305.4:c.486_487del	p.Tyr163GlnfsTer17	p.Y163Qfs*17	ENST00000269305	NM_001126112.2	162	atCTac/atac																																																																														
MED12	9968	MSKCC	GRCh37	X	70354688	70354688	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	121	452	0	ENST00000374080.3:c.4853A>C	p.Lys1618Thr	p.K1618T	ENST00000374080		1618	aAg/aCg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28586215	28586388	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GAGCGTTCTGGAGCCCCGAGAGACGCCCCGGGGTTCTAGAAGCTCCCCGGCGGCGCCCAGTCCCGGCTTCATTCGGGCGTCCCTCCGAAACCCACTCGGGTGCACGGGTCGTCGGCGAGCCGCGACCGGGTCCTGGCGCGCACCATGATCGTGGCGGACTCCGAGTGCCGCGCA	GAGCGTTCTGGAGCCCCGAGAGACGCCCCGGGGTTCTAGAAGCTCCCCGGCGGCGCCCAGTCCCGGCTTCATTCGGGCGTCCCTCCGAAACCCACTCGGGTGCACGGGTCGTCGGCGAGCCGCGACCGGGTCCTGGCGCGCACCATGATCGTGGCGGACTCCGAGTGCCGCGCA	-			P-0013435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			89	93	57	0	ENST00000253063.3:c.-140_34del		p.*47*	ENST00000253063	NM_031459.4																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266106	41266147	+	inframe_deletion	In_Frame_Del	DEL	ATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGT	ATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGT	-			P-0013435-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	143	273	0	ENST00000349496.5:c.104_145del	p.Ile35_Gly48del	p.I35_G48del	ENST00000349496	NM_001904.3	35	ATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGT/-																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861913	57861913	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114543757		P-0045398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	208	552	1	ENST00000228682.2:c.1214G>A	p.Arg405Gln	p.R405Q	ENST00000228682	NM_005269.2	405	cGg/cAg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348116	348116	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	286	813	1	ENST00000262320.3:c.1390G>T	p.Glu464Ter	p.E464*	ENST00000262320	NM_003502.3	464	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295199	1295200	+	upstream_gene_variant	5'Flank	INS	-	-	GGAAGGGGAGGGGCTGGGAGGGCCC			P-0045398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	48	293	0				ENST00000310581	NM_198253.2																																																																																
BCL2L11	10018	MSKCC	GRCh37	2	111881594	111881594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	80	217	0	ENST00000393256.3:c.272G>T	p.Arg91Leu	p.R91L	ENST00000393256	NM_006538.4	91	cGa/cTa																																																																														
MSI1	4440	MSKCC	GRCh37	12	120794704	120794718	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCCAGCATGCCGATG	CCCAGCATGCCGATG	-			P-0045566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	59	189	0	ENST00000257552.2:c.639_652+1del		p.X213_splice	ENST00000257552	NM_002442.3	213																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	39	336	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	30	281	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	73	498	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	42	238	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	27	272	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844747	156844747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	100	574	1	ENST00000524377.1:c.1301C>T	p.Thr434Met	p.T434M	ENST00000524377	NM_002529.3	434	aCg/aTg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979563	7979563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	80	500	0	ENST00000319144.4:c.1462C>T	p.Arg488Cys	p.R488C	ENST00000319144	NM_001139.2	488	Cgt/Tgt																																																																														
MGA	23269	MSKCC	GRCh37	15	42021441	42021442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	44	377	0	ENST00000219905.7:c.3744dup	p.Glu1249ArgfsTer25	p.E1249Rfs*25	ENST00000219905	NM_001164273.1	1246	cga/cgAa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417305	139417305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	59	355	0	ENST00000277541.6:c.739C>T	p.Pro247Ser	p.P247S	ENST00000277541	NM_017617.3	247	Cca/Tca																																																																														
TET2	54790	MSKCC	GRCh37	4	106164773	106164773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	57	364	0	ENST00000380013.4:c.3641G>A	p.Arg1214Gln	p.R1214Q	ENST00000380013	NM_001127208.2	1214	cGg/cAg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916463	39916463	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	106	315	0	ENST00000378444.4:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000378444	NM_001123385.1	1514	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893412	32893412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	20	263	1	ENST00000380152.3:c.266C>T	p.Pro89Leu	p.P89L	ENST00000380152		89	cCg/cTg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	62	491	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30264357	30264357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	14	102	0	ENST00000322652.5:c.92T>C	p.Val31Ala	p.V31A	ENST00000322652	NM_015355.2	31	gTg/gCg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275291	41275291	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750554859		P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	43	323	1	ENST00000349496.5:c.1457G>A	p.Arg486His	p.R486H	ENST00000349496	NM_001904.3	486	cGc/cAc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2124366	2124366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	88	703	0	ENST00000219476.3:c.2521G>A	p.Val841Ile	p.V841I	ENST00000219476	NM_000548.3	841	Gtc/Atc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231576	5231576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	52	270	0	ENST00000357368.4:c.1900G>A	p.Ala634Thr	p.A634T	ENST00000357368	NM_002850.3	634	Gcc/Acc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355059	15355059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	52	667	0	ENST00000263377.2:c.2564C>T	p.Ala855Val	p.A855V	ENST00000263377	NM_058243.2	855	gCa/gTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485280	8485280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	42	342	0	ENST00000356435.5:c.3100G>A	p.Val1034Met	p.V1034M	ENST00000356435		1034	Gtg/Atg																																																																														
AR	367	MSKCC	GRCh37	X	66766603	66766603	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	68	287	0	ENST00000374690.3:c.1615C>T	p.Arg539Cys	p.R539C	ENST00000374690	NM_000044.3	539	Cgt/Tgt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5211779	5211779	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	43	477	0	ENST00000357368.4:c.5056C>T	p.Arg1686Trp	p.R1686W	ENST00000357368	NM_002850.3	1686	Cgg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281494	15281494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	27	323	0	ENST00000263388.2:c.4879C>T	p.Arg1627Trp	p.R1627W	ENST00000263388	NM_000435.2	1627	Cgg/Tgg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31468079	31468079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	77	435	0	ENST00000344624.3:c.2333G>A	p.Arg778His	p.R778H	ENST00000344624		778	cGc/cAc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797198	45797198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	106	603	0	ENST00000372115.3:c.1175C>T	p.Ser392Phe	p.S392F	ENST00000372115	NM_001048171.1	392	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211939	36211939	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	103	652	2	ENST00000222270.7:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000222270	NM_014727.1	564	Cga/Tga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123721	11123721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	94	450	0	ENST00000344626.4:c.2371G>A	p.Ala791Thr	p.A791T	ENST00000344626	NM_003072.3	791	Gcg/Acg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11227537	11227537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	83	387	1	ENST00000361445.4:c.4291G>A	p.Gly1431Arg	p.G1431R	ENST00000361445	NM_004958.3	1431	Gga/Aga																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58678049	58678049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	24	177	0	ENST00000305921.3:c.274T>C	p.Cys92Arg	p.C92R	ENST00000305921	NM_003620.3	92	Tgc/Cgc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191157	185191157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	66	383	0	ENST00000265026.3:c.2038C>T	p.Arg680Trp	p.R680W	ENST00000265026	NM_004721.4	680	Cgg/Tgg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532613	63532613	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	99	635	0	ENST00000307078.5:c.1966C>T	p.Arg656Ter	p.R656*	ENST00000307078	NM_004655.3	656	Cga/Tga																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737370	145737370	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34236392		P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	198	671	2	ENST00000428558.2:c.3317G>A	p.Arg1106His	p.R1106H	ENST00000428558	NM_004260.3	1106	cGc/cAc																																																																														
LYN	4067	MSKCC	GRCh37	8	56879458	56879458	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	52	396	0	ENST00000519728.1:c.973+2T>C		p.X325_splice	ENST00000519728	NM_002350.3	325																																																																															
PMS1	5378	MSKCC	GRCh37	2	190717447	190717447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	35	235	0	ENST00000441310.2:c.766G>A	p.Glu256Lys	p.E256K	ENST00000441310	NM_000534.4	256	Gaa/Aaa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671699	30671699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	84	525	0	ENST00000376406.3:c.5261G>T	p.Arg1754Met	p.R1754M	ENST00000376406	NM_014641.2	1754	aGg/aTg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40485736	40485736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	102	387	0	ENST00000264657.5:c.1004G>A	p.Arg335Gln	p.R335Q	ENST00000264657	NM_139276.2	335	cGg/cAg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119706	17119706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	46	424	0	ENST00000285071.4:c.1288G>A	p.Val430Met	p.V430M	ENST00000285071	NM_144997.5	430	Gtg/Atg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350824	15350824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148664288		P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	65	508	0	ENST00000263377.2:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000263377	NM_058243.2	1060	cGc/cAc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295788	212295788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	38	408	0	ENST00000342788.4:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000342788	NM_005235.2	842	cGg/cAg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964415	70964415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	106	406	0	ENST00000276594.2:c.1613G>A	p.Arg538His	p.R538H	ENST00000276594	NM_024504.3	538	cGt/cAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376302	118376302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	41	405	0	ENST00000534358.1:c.9695G>A	p.Arg3232Gln	p.R3232Q	ENST00000534358	NM_005933.3	3232	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108172379	108172379	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	30	303	0	ENST00000278616.4:c.5182A>G	p.Lys1728Glu	p.K1728E	ENST00000278616	NM_000051.3	1728	Aaa/Gaa																																																																														
ABL1	25	MSKCC	GRCh37	9	133759593	133759593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	82	614	0	ENST00000318560.5:c.1916G>A	p.Arg639Gln	p.R639Q	ENST00000318560	NM_005157.4	639	cGa/cAa																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599288	28599288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	46	662	0	ENST00000253063.3:c.734C>T	p.Pro245Leu	p.P245L	ENST00000253063	NM_031459.4	245	cCg/cTg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018201	48018202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	82	515	0	ENST00000234420.5:c.402dup	p.Asp135Ter	p.D135*	ENST00000234420	NM_000179.2	132	-/T																																																																														
MTOR	2475	MSKCC	GRCh37	1	11205026	11205026	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	46	393	0	ENST00000361445.4:c.4763G>A	p.Gly1588Glu	p.G1588E	ENST00000361445	NM_004958.3	1588	gGg/gAg																																																																														
ID3	3399	MSKCC	GRCh37	1	23885905	23885905	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	37	232	0	ENST00000374561.5:c.13A>C	p.Ser5Arg	p.S5R	ENST00000374561	NM_002167.4	5	Agc/Cgc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739328	46739328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	57	398	0	ENST00000371975.4:c.1519G>A	p.Val507Met	p.V507M	ENST00000371975	NM_003579.3	507	Gtg/Atg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65323407	65323407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	67	454	0	ENST00000342505.4:c.1390G>A	p.Val464Met	p.V464M	ENST00000342505	NM_002227.2	464	Gtg/Atg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193121513	193121513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	26	170	0	ENST00000367435.3:c.911C>T	p.Thr304Met	p.T304M	ENST00000367435	NM_024529.4	304	aCg/aTg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456806	32456806	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	33	419	0	ENST00000332351.3:c.86A>C	p.Glu29Ala	p.E29A	ENST00000332351	NM_024426.4	29	gAg/gCg																																																																														
ATM	472	MSKCC	GRCh37	11	108155133	108155133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	35	368	0	ENST00000278616.4:c.3926C>T	p.Ala1309Val	p.A1309V	ENST00000278616	NM_000051.3	1309	gCa/gTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343390	118343390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	37	312	0	ENST00000534358.1:c.1516A>G	p.Thr506Ala	p.T506A	ENST00000534358	NM_005933.3	506	Acc/Gcc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871760	12871760	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	24	92	0	ENST00000228872.4:c.478del	p.Ser160LeufsTer65	p.S160Lfs*65	ENST00000228872	NM_004064.3	159	gaT/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432236	49432236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	120	718	0	ENST00000301067.7:c.8903C>T	p.Pro2968Leu	p.P2968L	ENST00000301067	NM_003482.3	2968	cCg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433742	49433742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	110	786	0	ENST00000301067.7:c.7811G>A	p.Ser2604Asn	p.S2604N	ENST00000301067	NM_003482.3	2604	aGc/aAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858905	57858905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	61	587	0	ENST00000228682.2:c.401G>A	p.Gly134Glu	p.G134E	ENST00000228682	NM_005269.2	134	gGa/gAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112461	115112461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	90	469	0	ENST00000257566.3:c.1279C>T	p.Arg427Trp	p.R427W	ENST00000257566	NM_016569.3	427	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133245434	133245434	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	78	574	0	ENST00000320574.5:c.1886C>G	p.Ala629Gly	p.A629G	ENST00000320574	NM_006231.2	629	gCc/gGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29508740	29508740	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	51	355	0	ENST00000358273.4:c.667T>G	p.Trp223Gly	p.W223G	ENST00000358273	NM_001042492.2	223	Tgg/Ggg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370322	40370322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	110	570	0	ENST00000293328.3:c.1016C>A	p.Pro339His	p.P339H	ENST00000293328	NM_012448.3	339	cCt/cAt																																																																														
MSI2	124540	MSKCC	GRCh37	17	55693418	55693418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	84	563	1	ENST00000284073.2:c.625G>A	p.Ala209Thr	p.A209T	ENST00000284073	NM_138962.2	209	Gcg/Acg																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774127	56774127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	40	366	0	ENST00000337432.4:c.478A>G	p.Thr160Ala	p.T160A	ENST00000337432	NM_058216.2	160	Aca/Gca																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395646	45395646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	21	310	0	ENST00000262160.6:c.488A>G	p.Asn163Ser	p.N163S	ENST00000262160	NM_005901.5	163	aAc/aGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223184	36223184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	135	816	0	ENST00000222270.7:c.5734C>T	p.Arg1912Cys	p.R1912C	ENST00000222270	NM_014727.1	1912	Cgt/Tgt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793391	242793391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	73	677	0	ENST00000334409.5:c.686A>G	p.Gln229Arg	p.Q229R	ENST00000334409	NM_005018.2	229	cAg/cGg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30686326	30686326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	59	253	0	ENST00000359013.4:c.257G>A	p.Cys86Tyr	p.C86Y	ENST00000359013	NM_001024847.2	86	tGt/tAt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026192	71026192	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	35	237	0	ENST00000318789.4:c.1430C>T	p.Ala477Val	p.A477V	ENST00000318789	NM_032682.5	477	gCc/gTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519435	176519435	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	84	633	0	ENST00000292408.4:c.841A>G	p.Ile281Val	p.I281V	ENST00000292408	NM_213647.1	281	Atc/Gtc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001349	150001349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	30	438	0	ENST00000253339.5:c.2255del	p.Ala752ValfsTer14	p.A752Vfs*14	ENST00000253339		752	gCt/gt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884915	151884915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	17	185	0	ENST00000262189.6:c.4678C>T	p.Pro1560Ser	p.P1560S	ENST00000262189	NM_170606.2	1560	Cct/Tct																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372218	55372218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	45	161	0	ENST00000297316.4:c.908C>A	p.Pro303His	p.P303H	ENST00000297316	NM_022454.3	303	cCc/cAc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5089704	5089704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	13	190	0	ENST00000381652.3:c.2602T>C	p.Tyr868His	p.Y868H	ENST00000381652	NM_004972.3	868	Tat/Cat																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15822284	15822284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	13	141	0	ENST00000307771.7:c.363G>T	p.Glu121Asp	p.E121D	ENST00000307771	NM_005089.3	121	gaG/gaT																																																																														
MTOR	2475	MSKCC	GRCh37	1	11177068	11177068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	52	263	1	ENST00000361445.4:c.7009G>A	p.Gly2337Arg	p.G2337R	ENST00000361445	NM_004958.3	2337	Gga/Aga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	15	47	0	ENST00000324856.7:c.413C>G	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tGa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959416	26959416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	60	385	0	ENST00000381527.3:c.583G>T	p.Val195Phe	p.V195F	ENST00000381527	NM_001260.1	195	Gtt/Ttt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437493	110437493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	83	433	0	ENST00000375856.3:c.908G>A	p.Arg303His	p.R303H	ENST00000375856	NM_003749.2	303	cGc/cAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141406	11141406	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	162	459	0	ENST00000344626.4:c.3383G>A	p.Gly1128Glu	p.G1128E	ENST00000344626	NM_003072.3	1128	gGa/gAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220059	36220068	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGAGGCGGGG	GGAGGCGGGG	-			P-0045572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	79	619	0	ENST00000222270.7:c.4780-1_4788del		p.X1594_splice	ENST00000222270	NM_014727.1	1594																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0045572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	124	256	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	121	151	0				ENST00000310581	NM_198253.2																																																																																
ARAF	369	MSKCC	GRCh37	X	47428962	47428962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	86	568	2	ENST00000377045.4:c.1325C>T	p.Thr442Met	p.T442M	ENST00000377045	NM_001654.4	442	aCg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	55	145	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	202	497	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876305	35876305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	113	456	0	ENST00000303115.3:c.1097C>T	p.Ser366Phe	p.S366F	ENST00000303115	NM_002185.3	366	tCc/tTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	250	285	0	ENST00000288602.6:c.1406G>A	p.Gly469Glu	p.G469E	ENST00000288602	NM_004333.4	469	gGa/gAa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729784	41729784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	192	371	0	ENST00000242208.4:c.745G>A	p.Glu249Lys	p.E249K	ENST00000242208	NM_002192.2	249	Gag/Aag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047200	180047200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	170	678	0	ENST00000261937.6:c.2515G>A	p.Glu839Lys	p.E839K	ENST00000261937	NM_182925.4	839	Gaa/Aaa																																																																														
LYN	4067	MSKCC	GRCh37	8	56922655	56922655	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	126	418	0	ENST00000519728.1:c.1525C>T	p.Gln509Ter	p.Q509*	ENST00000519728	NM_002350.3	509	Cag/Tag																																																																														
HGF	3082	MSKCC	GRCh37	7	81372765	81372765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	76	252	0	ENST00000222390.5:c.769G>A	p.Asp257Asn	p.D257N	ENST00000222390	NM_000601.4	257	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500885	8500885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	148	410	0	ENST00000356435.5:c.1997C>T	p.Pro666Leu	p.P666L	ENST00000356435		666	cCt/cTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306763	41306763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	112	385	0	ENST00000373198.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000373198	NM_133170.3	299	gCt/gTt																																																																														
TET1	80312	MSKCC	GRCh37	10	70332264	70332264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	119	274	0	ENST00000373644.4:c.169G>A	p.Asp57Asn	p.D57N	ENST00000373644	NM_030625.2	57	Gat/Aat																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130265	2130265	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	204	730	1	ENST00000219476.3:c.3497C>A	p.Pro1166His	p.P1166H	ENST00000219476	NM_000548.3	1166	cCt/cAt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965968	25965968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	228	585	0	ENST00000435504.4:c.3238C>T	p.Leu1080Phe	p.L1080F	ENST00000435504		1080	Ctc/Ttc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537906	212537906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	151	362	0	ENST00000342788.4:c.1699C>T	p.Leu567Phe	p.L567F	ENST00000342788	NM_005235.2	567	Ctc/Ttc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967210	93967210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	122	298	0	ENST00000369303.4:c.2142G>A	p.Met714Ile	p.M714I	ENST00000369303	NM_004440.3	714	atG/atA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663708	117663708	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	83	223	0	ENST00000368508.3:c.4525-1G>A		p.X1509_splice	ENST00000368508	NM_002944.2	1509																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933821	39933821	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	191	690	0	ENST00000378444.4:c.778T>G	p.Ser260Ala	p.S260A	ENST00000378444	NM_001123385.1	260	Tcc/Gcc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858068	152858068	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	128	512	0	ENST00000406277.2:c.547del	p.Arg183AlafsTer161	p.R183Afs*161	ENST00000406277	NM_152274.4	183	Cgc/gc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	27	182	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	72	333	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366808	40366808	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	31	328	2	ENST00000397332.2:c.389C>A	p.Ser130Ter	p.S130*	ENST00000397332	NM_001033082.2	130	tCg/tAg																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588896	69588896	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	66	369	0	ENST00000168712.1:c.341-1G>T		p.X114_splice	ENST00000168712	NM_002007.2	114																																																																															
FLT3	2322	MSKCC	GRCh37	13	28592649	28592649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	64	333	0	ENST00000241453.7:c.2496G>T	p.Leu832Phe	p.L832F	ENST00000241453	NM_004119.2	832	ttG/ttT																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107971	30107971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	90	379	0	ENST00000331968.5:c.836C>A	p.Thr279Asn	p.T279N	ENST00000331968	NM_002742.2	279	aCc/aAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221227	5221227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	167	467	0	ENST00000357368.4:c.3239G>T	p.Arg1080Leu	p.R1080L	ENST00000357368	NM_002850.3	1080	cGt/cTt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905045	50905045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	34	320	0	ENST00000440232.2:c.327G>T	p.Gln109His	p.Q109H	ENST00000440232	NM_002691.3	109	caG/caT																																																																														
PAK7	0	MSKCC	GRCh37	20	9560843	9560843	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	31	331	0	ENST00000353224.5:c.939C>A	p.Tyr313Ter	p.Y313*	ENST00000353224	NM_177990.2	313	taC/taA																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928631	49928631	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	59	458	0	ENST00000296474.3:c.3643A>G	p.Met1215Val	p.M1215V	ENST00000296474	NM_002447.2	1215	Atg/Gtg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673726	176673726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	23	275	0	ENST00000439151.2:c.4426C>T	p.His1476Tyr	p.H1476Y	ENST00000439151	NM_022455.4	1476	Cat/Tat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622151	117622151	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	39	211	0	ENST00000368508.3:c.6719A>T	p.Asn2240Ile	p.N2240I	ENST00000368508	NM_002944.2	2240	aAt/aTt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935564	13935564	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	37	296	0	ENST00000405192.2:c.1292A>G	p.Asp431Gly	p.D431G	ENST00000405192	NM_001163147.1	431	gAt/gGt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508604	106508604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	56	271	0	ENST00000359195.3:c.598C>A	p.Pro200Thr	p.P200T	ENST00000359195	NM_002649.2	200	Ccg/Acg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47004876	47004876	+	5_prime_UTR_variant	5'UTR	SNP	G	G	C			P-0045575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	107	470	0	ENST00000329236.7:c.-134G>C		p.*45*	ENST00000329236	NM_001204466.1																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49424114	49424114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	158	675	0	ENST00000301067.7:c.13948G>A	p.Glu4650Lys	p.E4650K	ENST00000301067	NM_003482.3	4650	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431339	49431339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	98	492	0	ENST00000301067.7:c.9800C>T	p.Ser3267Leu	p.S3267L	ENST00000301067	NM_003482.3	3267	tCa/tTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858258	9858258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	123	339	0	ENST00000330684.3:c.3143G>T	p.Ser1048Ile	p.S1048I	ENST00000330684	NM_001134407.1	1048	aGc/aTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832607	72832607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	54	205	0	ENST00000268489.5:c.3974C>T	p.Ser1325Leu	p.S1325L	ENST00000268489	NM_006885.3	1325	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579425	7579425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	173	692	1	ENST00000269305.4:c.262del	p.Ala88ProfsTer35	p.A88Pfs*35	ENST00000269305	NM_001126112.2	88	Gcc/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272328	15272328	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	251	948	0	ENST00000263388.2:c.6111C>G	p.His2037Gln	p.H2037Q	ENST00000263388	NM_000435.2	2037	caC/caG																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367984	15367984	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	193	529	0	ENST00000263377.2:c.1342G>C	p.Asp448His	p.D448H	ENST00000263377	NM_058243.2	448	Gat/Cat																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182631	38182631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	76	246	0	ENST00000396334.3:c.784C>T	p.Gln262Ter	p.Q262*	ENST00000396334	NM_002468.4	262	Cag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	106	247	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	142949964	142949964	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	33	333	0	ENST00000262992.4:c.2746G>C	p.Glu916Gln	p.E916Q	ENST00000262992	NM_001101669.1	916	Gag/Cag																																																																														
MSH3	4437	MSKCC	GRCh37	5	79965934	79965934	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	41	229	0	ENST00000265081.6:c.598C>G	p.Leu200Val	p.L200V	ENST00000265081	NM_002439.4	200	Ctc/Gtc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	60	390	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910349	29910349	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	434	832	0	ENST00000376809.5:c.19C>T	p.Arg7Ter	p.R7*	ENST00000376809	NM_002116.7	7	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	140	513	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
SYK	6850	MSKCC	GRCh37	9	93639929	93639929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	25	228	0	ENST00000375746.1:c.1258G>C	p.Glu420Gln	p.E420Q	ENST00000375746	NM_001174167.1	420	Gaa/Caa																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504167	123504167	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	12	216	0	ENST00000371139.4:c.343A>C	p.Thr115Pro	p.T115P	ENST00000371139	NM_001114937.2	115	Aca/Cca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	988	664	2	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0045687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	40	625	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473698	67473698	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	55	585	0	ENST00000327367.4:c.778T>A	p.Phe260Ile	p.F260I	ENST00000327367	NM_005902.3	260	Ttc/Atc																																																																														
PARK2	0	MSKCC	GRCh37	6	161781200	161781200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	31	542	0	ENST00000366898.1:c.1205G>A	p.Arg402His	p.R402H	ENST00000366898	NM_004562.2	402	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	63	289	0				ENST00000310581	NM_198253.2																																																																																
PAK7	0	MSKCC	GRCh37	20	9561547	9561547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	165	370	0	ENST00000353224.5:c.235G>A	p.Glu79Lys	p.E79K	ENST00000353224	NM_177990.2	79	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	129	296	0	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	364	635	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																														
WT1	7490	MSKCC	GRCh37	11	32421568	32421568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	283	481	1	ENST00000332351.3:c.1024G>A	p.Asp342Asn	p.D342N	ENST00000332351	NM_024426.4	342	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	212	488	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	212	488	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	212	488	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	184	252	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468230	50468230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	277	599	0	ENST00000331340.3:c.1465C>T	p.Pro489Ser	p.P489S	ENST00000331340	NM_006060.4	489	Cct/Tct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426722	212426722	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	34	415	0	ENST00000342788.4:c.2393T>G	p.Leu798Arg	p.L798R	ENST00000342788	NM_005235.2	798	cTt/cGt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012441	29012441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55974987		P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	109	424	0	ENST00000282397.4:c.430G>A	p.Glu144Lys	p.E144K	ENST00000282397	NM_002019.4	144	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	176	353	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274352	5274352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	147	376	0	ENST00000357368.4:c.95C>T	p.Pro32Leu	p.P32L	ENST00000357368	NM_002850.3	32	cCc/cTc																																																																														
RET	5979	MSKCC	GRCh37	10	43609951	43609951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	188	748	2	ENST00000355710.3:c.1903C>T	p.Arg635Cys	p.R635C	ENST00000355710	NM_020975.4	635	Cgc/Tgc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422151	81422151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	305	473	1	ENST00000298171.2:c.127G>A	p.Asp43Asn	p.D43N	ENST00000298171	NM_000369.2	43	Gat/Aat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151841835	151841835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	118	234	0	ENST00000262189.6:c.14306G>A	p.Trp4769Ter	p.W4769*	ENST00000262189	NM_170606.2	4769	tGg/tAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391917	139391917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	455	988	1	ENST00000277541.6:c.6274C>T	p.His2092Tyr	p.H2092Y	ENST00000277541	NM_017617.3	2092	Cat/Tat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535353	187535353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	137	339	0	ENST00000441802.2:c.9221C>T	p.Pro3074Leu	p.P3074L	ENST00000441802	NM_005245.3	3074	cCa/cTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913867	32913867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	68	257	0	ENST00000380152.3:c.5375C>T	p.Ser1792Phe	p.S1792F	ENST00000380152		1792	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202696	16202697	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	63	271	0	ENST00000375759.3:c.405-1_405delinsAA		p.X135_splice	ENST00000375759	NM_015001.2	135																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843493	156843493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	267	591	1	ENST00000524377.1:c.919G>T	p.Gly307Trp	p.G307W	ENST00000524377	NM_002529.3	307	Ggg/Tgg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022774	12022774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	187	460	0	ENST00000396373.4:c.880G>A	p.Glu294Lys	p.E294K	ENST00000396373	NM_001987.4	294	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032267	10032267	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	35	451	0	ENST00000330684.3:c.556T>G	p.Phe186Val	p.F186V	ENST00000330684	NM_001134407.1	186	Ttc/Gtc																																																																														
NF1	4763	MSKCC	GRCh37	17	29663463	29663463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	143	325	0	ENST00000358273.4:c.6119C>T	p.Ser2040Phe	p.S2040F	ENST00000358273	NM_001042492.2	2040	tCt/tTt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945424	17945424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	111	560	0	ENST00000458235.1:c.2306C>T	p.Ser769Phe	p.S769F	ENST00000458235	NM_000215.3	769	tCc/tTc																																																																														
INHA	3623	MSKCC	GRCh37	2	220439730	220439730	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144941390		P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	454	897	0	ENST00000243786.2:c.583G>A	p.Val195Met	p.V195M	ENST00000243786	NM_002191.3	195	Gtg/Atg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540059	187540059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	141	321	0	ENST00000441802.2:c.7681G>A	p.Glu2561Lys	p.E2561K	ENST00000441802	NM_005245.3	2561	Gag/Aag																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821569	32821569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	366	836	1	ENST00000354258.4:c.25G>A	p.Gly9Arg	p.G9R	ENST00000354258	NM_000593.5	9	Gga/Aga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985483	2985483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	193	387	0	ENST00000396946.4:c.328G>A	p.Glu110Lys	p.E110K	ENST00000396946	NM_032415.4	110	Gag/Aag																																																																														
HGF	3082	MSKCC	GRCh37	7	81346625	81346625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	106	189	0	ENST00000222390.5:c.1328C>T	p.Pro443Leu	p.P443L	ENST00000222390	NM_000601.4	443	cCa/cTa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508707	106508707	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	269	449	0	ENST00000359195.3:c.701A>C	p.Lys234Thr	p.K234T	ENST00000359195	NM_002649.2	234	aAg/aCg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950485	68950485	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	274	275	2	ENST00000288368.4:c.797T>A	p.Phe266Tyr	p.F266Y	ENST00000288368	NM_024870.2	266	tTt/tAt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5022160	5022160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	121	408	0	ENST00000381652.3:c.173C>T	p.Pro58Leu	p.P58L	ENST00000381652	NM_004972.3	58	cCa/cTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485920	8485921	+	missense_variant	Missense_Mutation	DNP	AG	AG	CA			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	83	308	0	ENST00000356435.5:c.2896_2897delinsTG	p.Leu966Cys	p.L966C	ENST00000356435		966	CTc/TGc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518064	8518064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	106	376	0	ENST00000356435.5:c.1327G>A	p.Glu443Lys	p.E443K	ENST00000356435		443	Gag/Aag																																																																														
TEK	7010	MSKCC	GRCh37	9	27203090	27203090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	130	384	0	ENST00000380036.4:c.2182G>A	p.Glu728Lys	p.E728K	ENST00000380036	NM_000459.3	728	Gaa/Aaa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399241	139399242	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	395	766	2	ENST00000277541.6:c.4901_4902delinsTT	p.Ala1634Val	p.A1634V	ENST00000277541	NM_017617.3	1634	gCC/gTT																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968251	134968251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	99	646	0	ENST00000398015.3:c.2764G>A	p.Ala922Thr	p.A922T	ENST00000398015	NM_004441.4	922	Gcc/Acc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0045692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	46	615	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0045692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	108	534	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50920465	50920465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	69	764	0	ENST00000440232.2:c.3157C>T	p.Arg1053Cys	p.R1053C	ENST00000440232	NM_002691.3	1053	Cgc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76829715	76829715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	19	231	0	ENST00000373344.5:c.6326G>A	p.Arg2109Lys	p.R2109K	ENST00000373344	NM_000489.3	2109	aGa/aAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589591	67589599	+	inframe_deletion	In_Frame_Del	DEL	TATAACACT	TATAACACT	-			P-0045692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	10	53	0	ENST00000274335.5:c.1354_1362del	p.Tyr452_Thr454del	p.Y452_T454del	ENST00000274335		452	TATAACACT/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	59	288	0				ENST00000310581	NM_198253.2																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	75	322	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247328	153247328	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	64	237	1	ENST00000281708.4:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000281708	NM_033632.3	492	Cag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	49	134	0	ENST00000274335.5:c.1126G>C	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Cga																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046482	69046482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	44	369	0	ENST00000288368.4:c.3955C>T	p.His1319Tyr	p.H1319Y	ENST00000288368	NM_024870.2	1319	Cac/Tac																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	162	424	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	231	954	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	81	343	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631301	117631301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199882276		P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	59	359	0	ENST00000368508.3:c.6377G>A	p.Arg2126Gln	p.R2126Q	ENST00000368508	NM_002944.2	2126	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71936089	71936089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	15	124	0	ENST00000298229.2:c.61T>C	p.Trp21Arg	p.W21R	ENST00000298229	NM_001567.3	21	Tgg/Cgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178603	32178603	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201560532		P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	73	783	0	ENST00000375023.3:c.2791G>A	p.Val931Met	p.V931M	ENST00000375023	NM_004557.3	931	Gtg/Atg																																																																														
HGF	3082	MSKCC	GRCh37	7	81334990	81334990	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	349	334	0	ENST00000222390.5:c.1837A>T	p.Ser613Cys	p.S613C	ENST00000222390	NM_000601.4	613	Agt/Tgt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907019	101907019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	39	177	0	ENST00000374994.4:c.979C>G	p.Pro327Ala	p.P327A	ENST00000374994	NM_004612.2	327	Cca/Gca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	429	476	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	96	335	0				ENST00000310581	NM_198253.2																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	83	171	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	181	311	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983120	201983121	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	143	565	0	ENST00000359651.3:c.970dup	p.Met324AsnfsTer147	p.M324Nfs*147	ENST00000359651		323	-/A																																																																														
APC	324	MSKCC	GRCh37	5	112176017	112176017	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	76	167	0	ENST00000257430.4:c.4726G>T	p.Glu1576Ter	p.E1576*	ENST00000257430	NM_000038.5	1576	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624301	89624302	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	136	451	0	ENST00000371953.3:c.75_76insC	p.Thr26HisfsTer18	p.T26Hfs*18	ENST00000371953	NM_000314.4	25	-/C																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611411	28611412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	89	202	0	ENST00000241453.7:c.1219dup	p.Cys407LeufsTer4	p.C407Lfs*4	ENST00000241453	NM_004119.2	407	tgc/tTgc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627804	37627805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	185	549	0	ENST00000447079.4:c.1720dup	p.Ser574LysfsTer67	p.S574Kfs*67	ENST00000447079	NM_015083.1	573	-/A																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021693	69021693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	133	380	0	ENST00000288368.4:c.2981C>T	p.Thr994Ile	p.T994I	ENST00000288368	NM_024870.2	994	aCc/aTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412139	63412142	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0045697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	256	694	0	ENST00000330258.3:c.1025_1028del	p.Asp342AlafsTer21	p.D342Afs*21	ENST00000330258	NM_152424.3	342	gACAGc/gc																																																																														
RB1	5925	MSKCC	GRCh37	13	48878143	48878144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	86	106	0	ENST00000267163.4:c.98dup	p.Glu34ArgfsTer15	p.E34Rfs*15	ENST00000267163	NM_000321.2	32	gac/gaCc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727168	40727168	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	154	496	0	ENST00000373198.4:c.3796G>C	p.Val1266Leu	p.V1266L	ENST00000373198	NM_133170.3	1266	Gtg/Ctg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090744	5090744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	54	140	0	ENST00000381652.3:c.2892G>A	p.Met964Ile	p.M964I	ENST00000381652	NM_004972.3	964	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	97	277	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144096	11144098	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			683	97	521	0	ENST00000344626.4:c.3679_3681delAAG	p.Lys1227del	p.K1227del	ENST00000344626	NM_003072.3	1226	cAGAag/cag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602869	10602869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			716	242	584	0	ENST00000171111.5:c.709C>G	p.Leu237Val	p.L237V	ENST00000171111	NM_203500.1	237	Ctg/Gtg																																																																														
STK11	6794	MSKCC	GRCh37	19	1206984	1206988	+	frameshift_variant	Frame_Shift_Del	DEL	GTTCA	GTTCA	-			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	160	387	0	ENST00000326873.7:c.72_76del	p.Phe25ProfsTer136	p.F25Pfs*136	ENST00000326873	NM_000455.4	24	acGTTCAtc/actc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11186763	11186763	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	154	406	0	ENST00000361445.4:c.6442C>T	p.Gln2148Ter	p.Q2148*	ENST00000361445	NM_004958.3	2148	Cag/Tag																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724577	162724586	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTACAAGA	ATGTACAAGA	-			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			810	135	375	0	ENST00000367921.3:c.349_358del	p.Met117SerfsTer33	p.M117Sfs*33	ENST00000367921	NM_006182.2	117	ATGTACAAGAtc/tc																																																																														
KIT	3815	MSKCC	GRCh37	4	55573302	55573302	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	86	295	0	ENST00000288135.5:c.964A>T	p.Thr322Ser	p.T322S	ENST00000288135	NM_000222.2	322	Aca/Tca																																																																														
HGF	3082	MSKCC	GRCh37	7	81350151	81350151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	157	248	0	ENST00000222390.5:c.1181G>A	p.Gly394Glu	p.G394E	ENST00000222390	NM_000601.4	394	gGg/gAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0045191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	14	39	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	40	64	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577146	7577147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGATTACC			P-0045191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	82	222	0	ENST00000269305.4:c.784_791dup	p.Leu265ValfsTer83	p.L265Vfs*83	ENST00000269305	NM_001126112.2	264	cta/ctGGTAATCTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	15	241	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934575		P-0045224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	28	564	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420499	49420499	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	33	600	0	ENST00000301067.7:c.15250C>G	p.Leu5084Val	p.L5084V	ENST00000301067	NM_003482.3	5084	Ctg/Gtg																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858369	27858369	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	30	507	0	ENST00000359303.2:c.202T>C	p.Phe68Leu	p.F68L	ENST00000359303	NM_003535.2	68	Ttt/Ctt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	354	651	2	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	354	651	2	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	13	301	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588626	28588626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	84	349	0	ENST00000241453.7:c.2822C>T	p.Ser941Leu	p.S941L	ENST00000241453	NM_004119.2	941	tCg/tTg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119325	3119325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	190	737	0	ENST00000078429.4:c.857C>T	p.Ser286Leu	p.S286L	ENST00000078429	NM_002067.2	286	tCg/tTg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18276986	18276986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	224	351	0	ENST00000222254.8:c.1433G>A	p.Arg478His	p.R478H	ENST00000222254	NM_005027.3	478	cGt/cAt																																																																														
NF2	4771	MSKCC	GRCh37	22	30032793	30032794	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	39	310	0	ENST00000338641.4:c.168_169delinsTT	p.Arg57Ter	p.R57*	ENST00000338641	NM_000268.3	56	ctCCga/ctTTga																																																																														
MED12	9968	MSKCC	GRCh37	X	70347217	70347217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	212	281	2	ENST00000374080.3:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000374080		961	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117650567	117650567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	125	385	0	ENST00000368508.3:c.5291G>A	p.Gly1764Glu	p.G1764E	ENST00000368508	NM_002944.2	1764	gGg/gAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715333	117715333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	77	198	0	ENST00000368508.3:c.1156G>A	p.Asp386Asn	p.D386N	ENST00000368508	NM_002944.2	386	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	118	415	2				ENST00000310581	NM_198253.2																																																																																
PREX2	80243	MSKCC	GRCh37	8	68931862	68931862	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200600940		P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	161	447	0	ENST00000288368.4:c.292G>A	p.Glu98Lys	p.E98K	ENST00000288368	NM_024870.2	98	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631445	117631445	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs190667369		P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	37	231	0	ENST00000368508.3:c.6234-1G>A		p.X2078_splice	ENST00000368508	NM_002944.2	2078																																																																															
EED	8726	MSKCC	GRCh37	11	85966300	85966300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	127	228	0	ENST00000263360.6:c.397C>T	p.Arg133Trp	p.R133W	ENST00000263360	NM_003797.3	133	Cgg/Tgg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62324580	62324580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	313	830	1	ENST00000508582.2:c.3008G>A	p.Arg1003Gln	p.R1003Q	ENST00000508582		1003	cGg/cAg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9781643	9781644	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	243	759	3	ENST00000377346.4:c.1953_1954delinsTT	p.Arg652Cys	p.R652C	ENST00000377346	NM_005026.3	651	ctCCgc/ctTTgc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458944	120458944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	262	667	0	ENST00000256646.2:c.6401C>T	p.Ser2134Phe	p.S2134F	ENST00000256646	NM_024408.3	2134	tCt/tTt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243778408	243778409	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	34	260	0	ENST00000263826.5:c.616_617delinsTT	p.Pro206Phe	p.P206F	ENST00000263826	NM_005465.4	206	CCc/TTc																																																																														
RET	5979	MSKCC	GRCh37	10	43606800	43606800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	195	822	0	ENST00000355710.3:c.1409C>T	p.Thr470Ile	p.T470I	ENST00000355710	NM_020975.4	470	aCc/aTc																																																																														
CBL	867	MSKCC	GRCh37	11	119155811	119155811	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	177	481	0	ENST00000264033.4:c.1563+1G>A		p.X521_splice	ENST00000264033	NM_005188.3	521																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431693	49431693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	68	800	0	ENST00000301067.7:c.9446C>T	p.Ser3149Phe	p.S3149F	ENST00000301067	NM_003482.3	3149	tCc/tTc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21565456	21565456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	242	680	0	ENST00000382592.4:c.430C>T	p.Pro144Ser	p.P144S	ENST00000382592	NM_014572.2	144	Ccg/Tcg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944571	32944571	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	161	411	0	ENST00000380152.3:c.8364G>A	p.Trp2788Ter	p.W2788*	ENST00000380152		2788	tgG/tgA																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726696	88726697	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	95	430	1	ENST00000360948.2:c.347_348delinsAA	p.Arg116Gln	p.R116Q	ENST00000360948	NM_001012338.2	116	cGG/cAA																																																																														
BLM	641	MSKCC	GRCh37	15	91346871	91346871	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	122	322	0	ENST00000355112.3:c.3479A>T	p.Tyr1160Phe	p.Y1160F	ENST00000355112	NM_000057.2	1160	tAt/tTt																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2090014	2090014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	335	948	0	ENST00000219066.1:c.850G>A	p.Gly284Ser	p.G284S	ENST00000219066	NM_002528.5	284	Ggc/Agc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830348	72830348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	113	447	1	ENST00000268489.5:c.6233C>T	p.Pro2078Leu	p.P2078L	ENST00000268489	NM_006885.3	2078	cCg/cTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81922807	81922807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	187	354	0	ENST00000359376.3:c.796C>G	p.Arg266Gly	p.R266G	ENST00000359376	NM_002661.3	266	Cgt/Ggt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577101	7577102	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	326	687	0	ENST00000269305.4:c.836_837delinsAA	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGG/gAA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16052787	16052787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	168	247	0	ENST00000268712.3:c.887G>A	p.Arg296Lys	p.R296K	ENST00000268712	NM_006311.3	296	aGa/aAa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63530029	63530029	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	123	359	0	ENST00000307078.5:c.2405+1G>C		p.X802_splice	ENST00000307078	NM_004655.3	802																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627395	1627395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	104	826	0	ENST00000344749.5:c.329C>T	p.Ser110Phe	p.S110F	ENST00000344749	NM_001136139.2	110	tCc/tTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300158	15300158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	358	740	0	ENST00000263388.2:c.1118G>A	p.Gly373Asp	p.G373D	ENST00000263388	NM_000435.2	373	gGc/gAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223611	36223611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	101	1029	0	ENST00000222270.7:c.6161G>T	p.Gly2054Val	p.G2054V	ENST00000222270	NM_014727.1	2054	gGa/gTa																																																																														
ALK	238	MSKCC	GRCh37	2	29519876	29519877	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	167	563	1	ENST00000389048.3:c.1694_1695delinsTT	p.Ser565Phe	p.S565F	ENST00000389048	NM_004304.4	565	tCC/tTT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251637	212251637	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	161	436	0	ENST00000342788.4:c.3422C>G	p.Pro1141Arg	p.P1141R	ENST00000342788	NM_005235.2	1141	cCa/cGa																																																																														
BARD1	580	MSKCC	GRCh37	2	215617193	215617193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	91	196	0	ENST00000260947.4:c.1655C>T	p.Ser552Phe	p.S552F	ENST00000260947	NM_000465.2	552	tCc/tTc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795056	242795057	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	71	972	1	ENST00000334409.5:c.152_153delinsTT	p.Thr51Ile	p.T51I	ENST00000334409	NM_005018.2	51	aCC/aTT																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911664	134911664	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	14	300	0	ENST00000398015.3:c.2129G>A	p.Arg710Lys	p.R710K	ENST00000398015	NM_004441.4	710	aGg/aAg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143226657	143226657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	168	306	0	ENST00000262992.4:c.457G>A	p.Gly153Arg	p.G153R	ENST00000262992	NM_001101669.1	153	Gga/Aga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525038	187525038	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	202	402	0	ENST00000441802.2:c.10642del	p.Leu3548TrpfsTer31	p.L3548Wfs*31	ENST00000441802	NM_005245.3	3548	Ctg/tg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557259	187557259	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	193	419	0	ENST00000441802.2:c.4103T>A	p.Met1368Lys	p.M1368K	ENST00000441802	NM_005245.3	1368	aTg/aAg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753206	57753206	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	93	224	0	ENST00000274289.3:c.810G>T	p.Met270Ile	p.M270I	ENST00000274289	NM_006622.3	270	atG/atT																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522732	67522732	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	124	189	0	ENST00000274335.5:c.229A>T	p.Ile77Phe	p.I77F	ENST00000274335		77	Att/Ttt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685209	86685209	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	80	161	0	ENST00000274376.6:c.2926-1G>A		p.X976_splice	ENST00000274376	NM_002890.2	976																																																																															
HIST1H3J	8356	MSKCC	GRCh37	6	27858336	27858336	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	232	653	0	ENST00000359303.2:c.235T>A	p.Phe79Ile	p.F79I	ENST00000359303	NM_003535.2	79	Ttc/Atc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166270	32166270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	367	672	0	ENST00000375023.3:c.4684C>T	p.Pro1562Ser	p.P1562S	ENST00000375023	NM_004557.3	1562	Cct/Tct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166425	32166425	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	312	651	0	ENST00000375023.3:c.4617+1G>A		p.X1539_splice	ENST00000375023	NM_004557.3	1539																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662375	117662375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	150	389	0	ENST00000368508.3:c.5002G>A	p.Glu1668Lys	p.E1668K	ENST00000368508	NM_002944.2	1668	Gag/Aag																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935565	13935565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	31	340	0	ENST00000405192.2:c.1291G>A	p.Asp431Asn	p.D431N	ENST00000405192	NM_001163147.1	431	Gat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55214409	55214409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	243	472	0	ENST00000275493.2:c.535G>A	p.Asp179Asn	p.D179N	ENST00000275493	NM_005228.3	179	Gac/Aac																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509672	106509672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	163	495	0	ENST00000359195.3:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000359195	NM_002649.2	556	Gag/Aag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38194889	38194889	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs74585221		P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	273	420	1	ENST00000317025.8:c.844C>T	p.Pro282Ser	p.P282S	ENST00000317025	NM_023034.1	282	Cct/Tct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391595	139391595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	328	1012	0	ENST00000277541.6:c.6596C>T	p.Pro2199Leu	p.P2199L	ENST00000277541	NM_017617.3	2199	cCc/cTc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314940	1314940	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	23	431	0				ENST00000381566																																																																																	
KDM5C	8242	MSKCC	GRCh37	X	53226030	53226030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	411	550	0	ENST00000375401.3:c.2819C>T	p.Pro940Leu	p.P940L	ENST00000375401	NM_004187.3	940	cCc/cTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412033	63412033	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	72	315	0	ENST00000330258.3:c.1134T>G	p.Asp378Glu	p.D378E	ENST00000330258	NM_152424.3	378	gaT/gaG																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525040	187525040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	209	412	0	ENST00000441802.2:c.10640C>T	p.Pro3547Leu	p.P3547L	ENST00000441802	NM_005245.3	3547	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	171	696	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519477	176519477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	82	734	0	ENST00000292408.4:c.883G>A	p.Gly295Arg	p.G295R	ENST00000292408	NM_213647.1	295	Gga/Aga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573456	48573456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	18	199	0	ENST00000342988.3:c.40G>T	p.Asp14Tyr	p.D14Y	ENST00000342988	NM_005359.5	14	Gat/Tat																																																																														
ATR	545	MSKCC	GRCh37	3	142218561	142218561	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	33	237	1	ENST00000350721.4:c.5289-1G>T		p.X1763_splice	ENST00000350721	NM_001184.3	1763																																																																															
BCL6	604	MSKCC	GRCh37	3	187446885	187446893	+	inframe_deletion	In_Frame_Del	DEL	CTCCCCGCT	CTCCCCGCT	-			P-0045551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	145	574	0	ENST00000232014.4:c.1300_1308del	p.Ser434_Glu436del	p.S434_E436del	ENST00000232014	NM_001130845.1	434	AGCGGGGAG/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	127	140	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0045552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	220	396	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807889	1807889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	408	602	0	ENST00000260795.2:c.1948A>G	p.Lys650Glu	p.K650E	ENST00000260795		650	Aag/Gag																																																																														
EP300	2033	MSKCC	GRCh37	22	41543942	41543942	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	126	430	0	ENST00000263253.7:c.2233C>G	p.Leu745Val	p.L745V	ENST00000263253	NM_001429.3	745	Ctc/Gtc																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997826	149997826	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	118	480	1	ENST00000253339.5:c.2641del	p.Asp881IlefsTer11	p.D881Ifs*11	ENST00000253339		881	Gat/at																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280804	41280804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	12	333	0	ENST00000349496.5:c.2317C>T	p.Gln773Ter	p.Q773*	ENST00000349496	NM_001904.3	773	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	115	529	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TP53	7157	MSKCC	GRCh37	17	7578488	7578488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	150	718	0	ENST00000269305.4:c.442G>C	p.Asp148His	p.D148H	ENST00000269305	NM_001126112.2	148	Gat/Cat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472600	88472600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	123	384	0	ENST00000360948.2:c.1955G>T	p.Gly652Val	p.G652V	ENST00000360948	NM_001012338.2	652	gGg/gTg																																																																														
BLM	641	MSKCC	GRCh37	15	91346876	91346876	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	85	353	0	ENST00000355112.3:c.3484A>G	p.Asn1162Asp	p.N1162D	ENST00000355112	NM_000057.2	1162	Aat/Gat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488657	212488657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	103	386	0	ENST00000342788.4:c.2192C>A	p.Thr731Lys	p.T731K	ENST00000342788	NM_005235.2	731	aCg/aAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530171	212530171	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	70	271	0	ENST00000342788.4:c.1748T>A	p.Phe583Tyr	p.F583Y	ENST00000342788	NM_005235.2	583	tTt/tAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212615390	212615390	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	113	398	0	ENST00000342788.4:c.596del	p.Gly199AspfsTer10	p.G199Dfs*10	ENST00000342788	NM_005235.2	199	gGa/ga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021820	71021820	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	53	192	0	ENST00000318789.4:c.1538T>A	p.Val513Glu	p.V513E	ENST00000318789	NM_032682.5	513	gTg/gAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104579	69104579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	114	533	0	ENST00000288368.4:c.4423C>T	p.Pro1475Ser	p.P1475S	ENST00000288368	NM_024870.2	1475	Cct/Tct																																																																														
AGO2	27161	MSKCC	GRCh37	8	141570599	141570599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	166	419	0	ENST00000220592.5:c.529G>T	p.Val177Leu	p.V177L	ENST00000220592	NM_012154.3	177	Gtg/Ttg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900200	101900200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	88	298	1	ENST00000374994.4:c.634G>T	p.Gly212Cys	p.G212C	ENST00000374994	NM_004612.2	212	Ggc/Tgc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410004	63410004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	104	471	0	ENST00000330258.3:c.3163G>T	p.Val1055Phe	p.V1055F	ENST00000330258	NM_152424.3	1055	Gtt/Ttt																																																																														
BTK	695	MSKCC	GRCh37	X	100617654	100617654	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	119	496	0	ENST00000308731.7:c.415G>C	p.Val139Leu	p.V139L	ENST00000308731	NM_000061.2	139	Gtt/Ctt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288968	212288970	+	frameshift_variant	Frame_Shift_Del	DEL	CGT	CGT	AG			P-0045553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	88	440	0	ENST00000342788.4:c.2776_2778delinsCT	p.Thr926LeufsTer8	p.T926Lfs*8	ENST00000342788	NM_005235.2	926	ACG/CT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	138	326	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0045554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	94	315	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	173	411	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922694	44922694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	101	241	1	ENST00000377967.4:c.1555C>T	p.Arg519Ter	p.R519*	ENST00000377967	NM_021140.2	519	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089769	27089769	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	74	438	0	ENST00000324856.7:c.2725C>T	p.Gln909Ter	p.Q909*	ENST00000324856	NM_006015.4	909	Caa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	209	239	0	ENST00000371953.3:c.801+1G>A		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057652	27057653	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0045554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	239	406	0	ENST00000324856.7:c.1361dup	p.Tyr454Ter	p.Y454*	ENST00000324856	NM_006015.4	454	tat/tAat																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31368226	31368226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	233	517	0	ENST00000328111.2:c.97G>A	p.Asp33Asn	p.D33N	ENST00000328111	NM_006892.3	33	Gac/Aac																																																																														
MTOR	2475	MSKCC	GRCh37	1	11189845	11189845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	63	412	0	ENST00000361445.4:c.5664C>G	p.Phe1888Leu	p.F1888L	ENST00000361445	NM_004958.3	1888	ttC/ttG																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633161	3633161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	81	706	0	ENST00000294008.3:c.5090C>A	p.Pro1697Gln	p.P1697Q	ENST00000294008	NM_032444.2	1697	cCa/cAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211099	36211099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	120	650	0	ENST00000222270.7:c.850C>G	p.Gln284Glu	p.Q284E	ENST00000222270	NM_014727.1	284	Cag/Gag																																																																														
RAD21	5885	MSKCC	GRCh37	8	117870627	117870629	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0045554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	110	296	0	ENST00000297338.2:c.443_445del	p.Glu148del	p.E148del	ENST00000297338	NM_006265.2	148	gAAGtt/gtt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123229245	123229245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	101	234	0	ENST00000218089.9:c.3729G>T	p.Glu1243Asp	p.E1243D	ENST00000218089	NM_001042749.1	1243	gaG/gaT																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68758694	68758694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	78	182	0	ENST00000487270.1:c.850G>C	p.Glu284Gln	p.E284Q	ENST00000487270	NM_133509.3	284	Gaa/Caa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350358	89350358	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	206	492	0	ENST00000301030.4:c.2592C>G	p.Asp864Glu	p.D864E	ENST00000301030	NM_001256183.1	864	gaC/gaG																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099931	157099931	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	100	221	0	ENST00000346085.5:c.868T>G	p.Tyr290Asp	p.Y290D	ENST00000346085	NM_020732.3	290	Tac/Gac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	61	378	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099226	4099226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	136	589	0	ENST00000262948.5:c.892C>T	p.Pro298Ser	p.P298S	ENST00000262948	NM_030662.3	298	Ccg/Tcg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715643	30715643	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	100	217	0	ENST00000359013.4:c.1376T>G	p.Met459Arg	p.M459R	ENST00000359013	NM_001024847.2	459	aTg/aGg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33290691	33290691	+	5_prime_UTR_variant	5'UTR	SNP	T	T	C			P-0045558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	94	491	0	ENST00000374542.5:c.-105A>G		p.*35*	ENST00000374542	NM_001141970.1																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971178	21971182	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCA	CGCCA	-			P-0045558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	72	306	0	ENST00000304494.5:c.176_180del	p.Val59GlyfsTer59	p.V59Gfs*59	ENST00000304494	NM_000077.4	59	gTGGCG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971178	21971182	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCA	CGCCA	-			P-0045558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	72	306	0	ENST00000304494.5:c.176_180del	p.Val59GlyfsTer59	p.V59Gfs*59	ENST00000304494	NM_000077.4	59	gTGGCG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971178	21971182	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCA	CGCCA	-			P-0045558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	72	306	0	ENST00000304494.5:c.176_180del	p.Val59GlyfsTer59	p.V59Gfs*59	ENST00000304494	NM_000077.4	59	gTGGCG/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	96	155	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	425	405	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579408	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTG	-			P-0045565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	293	652	0	ENST00000269305.4:c.257_279delCACCAGCCCCCTCCTGGCCCCTG	p.Ala86ValfsTer55	p.A86Vfs*55	ENST00000269305	NM_001126112.2	86	gCACCAGCCCCCTCCTGGCCCCTG/g																																																																														
PPARG	5468	MSKCC	GRCh37	3	12475550	12475550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	312	455	0	ENST00000287820.6:c.1424C>T	p.Thr475Met	p.T475M	ENST00000287820	NM_015869.4	475	aCg/aTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045030	47045030	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0045565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	435	356	0	ENST00000329236.7:c.2121+1G>T		p.X707_splice	ENST00000329236	NM_001204466.1	707																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421900	49421900	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	806	581	0	ENST00000301067.7:c.14407del	p.Val4803TrpfsTer5	p.V4803Wfs*5	ENST00000301067	NM_003482.3	4803	Gtg/tg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024559	16024559	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	56	410	0	ENST00000268712.3:c.1659G>C	p.Lys553Asn	p.K553N	ENST00000268712	NM_006311.3	553	aaG/aaC																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139898	50139898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	489	693	1	ENST00000246792.3:c.431C>T	p.Ala144Val	p.A144V	ENST00000246792	NM_006270.3	144	gCa/gTa																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127240	22127240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	286	467	0	ENST00000215832.6:c.888C>G	p.Phe296Leu	p.F296L	ENST00000215832	NM_002745.4	296	ttC/ttG																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458392	12458396	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGA	CTTGA	-			P-0045565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	312	536	0	ENST00000287820.6:c.1014_1018del	p.Asp338GlufsTer25	p.D338Efs*25	ENST00000287820	NM_015869.4	337	CTTGAc/c																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182325	38182325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	48	378	0	ENST00000396334.3:c.761T>C	p.Leu254Pro	p.L254P	ENST00000396334	NM_002468.4	254	cTc/cCc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808923	1808924	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	402	638	0	ENST00000260795.2:c.2356dup	p.Asp786GlyfsTer31	p.D786Gfs*31	ENST00000260795		785	-/G																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521487	8521487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	259	437	0	ENST00000356435.5:c.751G>A	p.Gly251Arg	p.G251R	ENST00000356435		251	Gga/Aga																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858236	59858236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	216	348	0	ENST00000259008.2:c.1759C>T	p.His587Tyr	p.H587Y	ENST00000259008	NM_032043.2	587	Cat/Tat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	214	288	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189526232	189526232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	354	467	0	ENST00000264731.3:c.496C>T	p.Pro166Ser	p.P166S	ENST00000264731	NM_003722.4	166	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	180	338	0	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																														
LYN	4067	MSKCC	GRCh37	8	56912075	56912075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	348	491	0	ENST00000519728.1:c.1303G>A	p.Glu435Lys	p.E435K	ENST00000519728	NM_002350.3	435	Gaa/Aaa																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749455	41749455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	235	334	0	ENST00000226382.2:c.340G>A	p.Glu114Lys	p.E114K	ENST00000226382	NM_003924.3	114	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517867	187517867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	219	296	0	ENST00000441802.2:c.12827C>T	p.Ser4276Phe	p.S4276F	ENST00000441802	NM_005245.3	4276	tCt/tTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002814	69002814	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	120	193	0	ENST00000288368.4:c.2114G>A	p.Gly705Glu	p.G705E	ENST00000288368	NM_024870.2	705	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117630033	117630033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	173	274	0	ENST00000368508.3:c.6493C>T	p.His2165Tyr	p.H2165Y	ENST00000368508	NM_002944.2	2165	Cat/Tat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	135	128	0				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9923386	9923386	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	335	413	0	ENST00000330684.3:c.1901G>A	p.Trp634Ter	p.W634*	ENST00000330684	NM_001134407.1	634	tGg/tAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458414	120458414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	276	436	0	ENST00000256646.2:c.6931C>T	p.Pro2311Ser	p.P2311S	ENST00000256646	NM_024408.3	2311	Cct/Tct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692938	89692938	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	213	443	0	ENST00000371953.3:c.422A>C	p.His141Pro	p.H141P	ENST00000371953	NM_000314.4	141	cAt/cCt																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025635	1025635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	276	474	0	ENST00000358495.3:c.740C>T	p.Ser247Phe	p.S247F	ENST00000358495	NM_134424.2	247	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243549	46243549	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	168	208	0	ENST00000334344.6:c.1903del	p.Ser635HisfsTer12	p.S635Hfs*12	ENST00000334344	NM_152641.2	634	ccT/cc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244124	46244124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	227	364	0	ENST00000334344.6:c.2218C>T	p.Gln740Ter	p.Q740*	ENST00000334344	NM_152641.2	740	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442470	49442471	+	missense_variant	Missense_Mutation	DNP	GA	GA	AC			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	290	537	0	ENST00000301067.7:c.4102_4103delinsGT	p.Ser1368Val	p.S1368V	ENST00000301067	NM_003482.3	1368	TCc/GTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934944	9934944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	148	254	0	ENST00000330684.3:c.1346G>A	p.Gly449Glu	p.G449E	ENST00000330684	NM_001134407.1	449	gGg/gAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81939050	81939050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	242	414	0	ENST00000359376.3:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000359376	NM_002661.3	469	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211876	36211876	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	476	655	0	ENST00000222270.7:c.1630del	p.Arg544GlyfsTer61	p.R544Gfs*61	ENST00000222270	NM_014727.1	543	Ccc/cc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40864868	40864868	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	154	287	0	ENST00000373198.4:c.2399+1G>T		p.X800_splice	ENST00000373198	NM_133170.3	800																																																																															
TET2	54790	MSKCC	GRCh37	4	106157924	106157925	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	137	230	0	ENST00000380013.4:c.2825_2826delinsTT	p.Pro942Leu	p.P942L	ENST00000380013	NM_001127208.2	942	cCC/cTT																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38944608	38944608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	153	321	0	ENST00000357387.3:c.4853G>A	p.Arg1618Lys	p.R1618K	ENST00000357387	NM_152756.3	1618	aGa/aAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681113	117681113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	221	377	0	ENST00000368508.3:c.3507G>A	p.Met1169Ile	p.M1169I	ENST00000368508	NM_002944.2	1169	atG/atA																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528634	157528634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	329	499	0	ENST00000346085.5:c.6359G>A	p.Gly2120Glu	p.G2120E	ENST00000346085	NM_020732.3	2120	gGg/gAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367299	50367299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	237	314	0	ENST00000331340.3:c.106G>A	p.Asp36Asn	p.D36N	ENST00000331340	NM_006060.4	36	Gac/Aac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504354	8504354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	214	383	0	ENST00000356435.5:c.1729C>T	p.Pro577Ser	p.P577S	ENST00000356435		577	Cca/Tca																																																																														
TEK	7010	MSKCC	GRCh37	9	27209163	27209163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	205	375	1	ENST00000380036.4:c.2620G>A	p.Glu874Lys	p.E874K	ENST00000380036	NM_000459.3	874	Gaa/Aaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123182878	123182878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	124	180	0	ENST00000218089.9:c.843A>G	p.Ile281Met	p.I281M	ENST00000218089	NM_001042749.1	281	atA/atG																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211877	36211879	+	frameshift_variant	Frame_Shift_Del	DEL	CCC	CCC	TT			P-0045573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	482	663	1	ENST00000222270.7:c.1628_1630delinsTT	p.Pro543LeufsTer62	p.P543Lfs*62	ENST00000222270	NM_014727.1	543	cCCCgg/cTTgg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740242	162740242	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	93	403	0	ENST00000367921.3:c.1444C>G	p.Gln482Glu	p.Q482E	ENST00000367921	NM_006182.2	482	Cag/Gag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932903	49932903	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	78	683	0	ENST00000296474.3:c.3041G>C	p.Gly1014Ala	p.G1014A	ENST00000296474	NM_002447.2	1014	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578416	7578461	+	protein_altering_variant	In_Frame_Del	DEL	CCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGAC	CCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGAC	G			P-0045578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	270	597	0	ENST00000269305.4:c.469_514delinsC	p.Val157_Val172delinsLeu	p.V157_V172delinsL	ENST00000269305	NM_001126112.2	157	GTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGtt/Ctt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0045581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	36	320	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0045583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	311	635	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	99	415	0	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	84	235	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	158	499	0	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280062	66280062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	54	169	0	ENST00000273854.3:c.1627C>T	p.Arg543Cys	p.R543C	ENST00000273854	NM_004439.5	543	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101492	27101492	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	123	570	0	ENST00000324856.7:c.4777del	p.Arg1593GlyfsTer19	p.R1593Gfs*19	ENST00000324856	NM_006015.4	1592	Ccc/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624305	89624305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0045588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	188	385	0	ENST00000371953.3:c.79T>G	p.Tyr27Asp	p.Y27D	ENST00000371953	NM_000314.4	27	Tat/Gat																																																																														
ATM	472	MSKCC	GRCh37	11	108143318	108143318	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	77	300	0	ENST00000278616.4:c.3137T>G	p.Leu1046Arg	p.L1046R	ENST00000278616	NM_000051.3	1046	cTt/cGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			197	93	361	1				ENST00000310581	NM_198253.2																																																																																
NCOA3	8202	MSKCC	GRCh37	20	46268483	46268483	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			202	176	338	0	ENST00000371998.3:c.2870C>G	p.Ser957Cys	p.S957C	ENST00000371998		957	tCt/tGt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480320	56480320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			350	23	362	0	ENST00000267101.3:c.427C>G	p.Leu143Val	p.L143V	ENST00000267101	NM_001982.3	143	Ctg/Gtg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981495	201981496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			173	236	656	0	ENST00000359651.3:c.409_410insT	p.Ser137MetfsTer5	p.S137Mfs*5	ENST00000359651		137	agt/aTgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440530	49440530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			667	41	675	1	ENST00000301067.7:c.4280G>T	p.Cys1427Phe	p.C1427F	ENST00000301067	NM_003482.3	1427	tGt/tTt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17122524	17122524	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0024340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			258	126	519	0	ENST00000285071.4:c.872-1G>A		p.X291_splice	ENST00000285071	NM_144997.5	291																																																																															
CIC	23152	MSKCC	GRCh37	19	42798200	42798200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			426	216	737	0	ENST00000575354.2:c.4154C>A	p.Ala1385Asp	p.A1385D	ENST00000575354	NM_015125.3	1385	gCc/gAc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967332	25967332	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			195	98	284	0	ENST00000435504.4:c.1874G>C	p.Arg625Thr	p.R625T	ENST00000435504		625	aGa/aCa																																																																														
PAK7	0	MSKCC	GRCh37	20	9624965	9624965	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			288	57	239	0	ENST00000353224.5:c.12G>C	p.Lys4Asn	p.K4N	ENST00000353224	NM_177990.2	4	aaG/aaC																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021799	71021799	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			234	95	277	0	ENST00000318789.4:c.1559A>C	p.His520Pro	p.H520P	ENST00000318789	NM_032682.5	520	cAc/cCc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523095	176523095	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024340-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			351	163	744	0	ENST00000292408.4:c.1859T>G	p.Val620Gly	p.V620G	ENST00000292408	NM_213647.1	620	gTg/gGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295186	1295187	+	upstream_gene_variant	5'Flank	INS	-	-	GGGGCCGCGGAAAGGAAGGGGA			P-0028277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	18	207	0				ENST00000310581	NM_198253.2																																																																																
PRKD1	5587	MSKCC	GRCh37	14	30105536	30105536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	101	568	0	ENST00000331968.5:c.1150G>T	p.Asp384Tyr	p.D384Y	ENST00000331968	NM_002742.2	384	Gat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042069-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			193	49	233	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108186599	108186599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042069-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			112	37	123	0	ENST00000278616.4:c.6056A>G	p.Tyr2019Cys	p.Y2019C	ENST00000278616	NM_000051.3	2019	tAt/tGt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042069-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			458	424	658	0	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175946	176175947	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042069-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			88	17	107	0	ENST00000367669.3:c.168dup	p.Gly57ArgfsTer21	p.G57Rfs*21	ENST00000367669	NM_022457.5	56	-/C																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419973	41419973	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042069-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			494	70	605	0	ENST00000373198.4:c.348C>G	p.Ser116Arg	p.S116R	ENST00000373198	NM_133170.3	116	agC/agG																																																																														
BCL6	604	MSKCC	GRCh37	3	187443418	187443418	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0042069-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			209	121	289	0	ENST00000232014.4:c.1709-1G>A		p.X570_splice	ENST00000232014	NM_001130845.1	570																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143326433	143326433	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042069-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			299	35	350	0	ENST00000262992.4:c.181A>G	p.Thr61Ala	p.T61A	ENST00000262992	NM_001101669.1	61	Aca/Gca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295440	1295440	+	upstream_gene_variant	5'Flank	DEL	G	G	-			P-0042069-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			43	12	46	0				ENST00000310581	NM_198253.2																																																																																
CARD11	84433	MSKCC	GRCh37	7	2974206	2974206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042069-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			527	84	692	0	ENST00000396946.4:c.1399C>A	p.Pro467Thr	p.P467T	ENST00000396946	NM_032415.4	467	Ccc/Acc																																																																														
HGF	3082	MSKCC	GRCh37	7	81399274	81399274	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042069-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			524	102	606	0	ENST00000222390.5:c.14A>T	p.Lys5Ile	p.K5I	ENST00000222390	NM_000601.4	5	aAa/aTa																																																																														
SMO	6608	MSKCC	GRCh37	7	128829065	128829065	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042069-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			57	15	50	0	ENST00000249373.3:c.73G>T	p.Asp25Tyr	p.D25Y	ENST00000249373	NM_005631.4	25	Gac/Tac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	1612	666	0	ENST00000269571.5:c.2326_2327insTGT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTGTgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1279432	1279432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1607	894	881	0	ENST00000310581.5:c.2104C>T	p.Pro702Ser	p.P702S	ENST00000310581	NM_198253.2	702	Ccg/Tcg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966955	25966955	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	187	681	1	ENST00000435504.4:c.2251C>G	p.Gln751Glu	p.Q751E	ENST00000435504		751	Cag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577516	7577517	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			117	644	566	0	ENST00000269305.4:c.764_765del	p.Ile255AsnfsTer8	p.I255Nfs*8	ENST00000269305	NM_001126112.2	255	aTC/a																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660574	67660574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	817	502	0	ENST00000264010.4:c.1474G>C	p.Glu492Gln	p.E492Q	ENST00000264010	NM_006565.3	492	Gag/Cag																																																																														
MSI2	124540	MSKCC	GRCh37	17	55674294	55674294	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	435	344	0	ENST00000284073.2:c.520G>T	p.Glu174Ter	p.E174*	ENST00000284073	NM_138962.2	174	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812163	212812163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			165	108	240	0	ENST00000342788.4:c.413A>G	p.Asn138Ser	p.N138S	ENST00000342788	NM_005235.2	138	aAc/aGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502314	157502314	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			101	400	364	0	ENST00000346085.5:c.3345+2T>G		p.X1115_splice	ENST00000346085	NM_020732.3	1115																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412888	63412888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045267-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	710	686	0	ENST00000330258.3:c.279C>A	p.Ser93Arg	p.S93R	ENST00000330258	NM_152424.3	93	agC/agA																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266091	41266099	+	inframe_deletion	In_Frame_Del	DEL	TACCTGGAC	TACCTGGAC	-			P-0045454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	241	339	0	ENST00000349496.5:c.89_97del	p.Tyr30_Asp32del	p.Y30_D32del	ENST00000349496	NM_001904.3	30	TACCTGGAC/-																																																																														
VHL	7428	MSKCC	GRCh37	3	10188251	10188251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs5030813		P-0045457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	129	485	0	ENST00000256474.2:c.394C>T	p.Gln132Ter	p.Q132*	ENST00000256474	NM_000551.3	132	Caa/Taa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64135964	64135964	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	162	916	0	ENST00000334205.4:c.1225G>T	p.Glu409Ter	p.E409*	ENST00000334205	NM_003942.2	409	Gag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584578	52584579	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	135	619	0	ENST00000394830.3:c.4434dup	p.Ile1479HisfsTer30	p.I1479Hfs*30	ENST00000394830	NM_018313.4	1478	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112175015	112175015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	63	166	0	ENST00000257430.4:c.3724C>T	p.Gln1242Ter	p.Q1242*	ENST00000257430	NM_000038.5	1242	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55228005	55228005	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	26	228	0	ENST00000275493.2:c.1472T>A	p.Ile491Lys	p.I491K	ENST00000275493	NM_005228.3	491	aTa/aAa																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	236	738	0	ENST00000481739.1:c.1280C>A	p.Ser427Tyr	p.S427Y	ENST00000481739	NM_002957.4	427	tCc/tAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18956876	18956876	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	119	645	0	ENST00000262803.5:c.319G>T	p.Glu107Ter	p.E107*	ENST00000262803	NM_002911.3	107	Gaa/Taa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18956882	18956882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	113	628	0	ENST00000262803.5:c.325G>A	p.Glu109Lys	p.E109K	ENST00000262803	NM_002911.3	109	Gaa/Aaa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436687	52436687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	51	595	0	ENST00000460680.1:c.1987G>A	p.Asp663Asn	p.D663N	ENST00000460680	NM_004656.3	663	Gat/Aat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941837	44941837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	68	129	0	ENST00000377967.4:c.3161G>A	p.Arg1054Lys	p.R1054K	ENST00000377967	NM_021140.2	1054	aGa/aAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941830	44941830	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	CA			P-0045462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	49	129	0	ENST00000377967.4:c.3154delinsCA	p.Glu1052GlnfsTer7	p.E1052Qfs*7	ENST00000377967	NM_021140.2	1052	Gaa/CAaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	60	284	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	50	524	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108205807	108205807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	50	376	0	ENST00000278616.4:c.8122G>A	p.Asp2708Asn	p.D2708N	ENST00000278616	NM_000051.3	2708	Gat/Aat																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061393	38061393	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	111	583	0	ENST00000250448.2:c.596G>A	p.Trp199Ter	p.W199*	ENST00000250448	NM_004496.3	199	tGg/tAg																																																																														
AKT1	207	MSKCC	GRCh37	14	105239420	105239420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	66	571	0	ENST00000349310.3:c.967G>C	p.Asp323His	p.D323H	ENST00000349310	NM_001014432.1	323	Gac/Cac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254713	16254713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	60	481	0	ENST00000375759.3:c.1978G>C	p.Glu660Gln	p.E660Q	ENST00000375759	NM_015001.2	660	Gaa/Caa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730909	40730909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201064715		P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	151	598	0	ENST00000373198.4:c.3626G>A	p.Arg1209Gln	p.R1209Q	ENST00000373198	NM_133170.3	1209	cGg/cAg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396856	396856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	64	719	1	ENST00000262320.3:c.170C>T	p.Ser57Leu	p.S57L	ENST00000262320	NM_003502.3	57	tCg/tTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021332	31021332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	123	533	0	ENST00000375687.4:c.1331C>T	p.Ser444Leu	p.S444L	ENST00000375687	NM_015338.5	444	tCa/tTa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495604	56495604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	45	481	0	ENST00000267101.3:c.3794G>A	p.Arg1265Gln	p.R1265Q	ENST00000267101	NM_001982.3	1265	cGg/cAg																																																																														
MPL	4352	MSKCC	GRCh37	1	43805222	43805222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	109	601	0	ENST00000372470.3:c.672G>T	p.Gln224His	p.Q224H	ENST00000372470	NM_005373.2	224	caG/caT																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982095	201982096	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	150	700	0	ENST00000359651.3:c.622dup	p.His208ProfsTer9	p.H208Pfs*9	ENST00000359651		207	tcc/tCcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690843	89690843	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	18	297	0	ENST00000371953.3:c.250A>T	p.Arg84Ter	p.R84*	ENST00000371953	NM_000314.4	84	Aga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108117703	108117703	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	14	185	0	ENST00000278616.4:c.914del	p.Ser305Ter	p.S305*	ENST00000278616	NM_000051.3	305	tCa/ta																																																																														
ATM	472	MSKCC	GRCh37	11	108205818	108205818	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	40	358	0	ENST00000278616.4:c.8133G>C	p.Glu2711Asp	p.E2711D	ENST00000278616	NM_000051.3	2711	gaG/gaC																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360919	118360919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	27	400	0	ENST00000534358.1:c.4651C>G	p.His1551Asp	p.H1551D	ENST00000534358	NM_005933.3	1551	Cat/Gat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118366520	118366520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	23	342	0	ENST00000534358.1:c.5469G>A	p.Met1823Ile	p.M1823I	ENST00000534358	NM_005933.3	1823	atG/atA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907259	32907259	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	57	412	0	ENST00000380152.3:c.1644G>C	p.Gln548His	p.Q548H	ENST00000380152		548	caG/caC																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061479	38061479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	135	524	0	ENST00000250448.2:c.510G>C	p.Lys170Asn	p.K170N	ENST00000250448	NM_004496.3	170	aaG/aaC																																																																														
BLM	641	MSKCC	GRCh37	15	91304065	91304065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	39	491	0	ENST00000355112.3:c.1462G>C	p.Glu488Gln	p.E488Q	ENST00000355112	NM_000057.2	488	Gaa/Caa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99451974	99451974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	78	376	1	ENST00000268035.6:c.1308C>A	p.His436Gln	p.H436Q	ENST00000268035	NM_000875.3	436	caC/caA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965032	15965032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	81	469	0	ENST00000268712.3:c.5564G>A	p.Ser1855Asn	p.S1855N	ENST00000268712	NM_006311.3	1855	aGc/aAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029399	16029399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	14	327	0	ENST00000268712.3:c.1631C>G	p.Ser544Cys	p.S544C	ENST00000268712	NM_006311.3	544	tCc/tGc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17122506	17122506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	96	569	0	ENST00000285071.4:c.889G>C	p.Glu297Gln	p.E297Q	ENST00000285071	NM_144997.5	297	Gaa/Caa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218158	36218158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	93	440	0	ENST00000222270.7:c.4105G>A	p.Glu1369Lys	p.E1369K	ENST00000222270	NM_014727.1	1369	Gag/Aag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99193530	99193530	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	236	727	0	ENST00000074304.5:c.2725G>T	p.Glu909Ter	p.E909*	ENST00000074304	NM_001134224.1	909	Gag/Tag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160630	56160630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	51	293	0	ENST00000399503.3:c.904G>A	p.Glu302Lys	p.E302K	ENST00000399503	NM_005921.1	302	Gag/Aag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180916	32180916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	112	517	2	ENST00000375023.3:c.2434G>A	p.Asp812Asn	p.D812N	ENST00000375023	NM_004557.3	812	Gac/Aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140534572	140534572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	42	323	0	ENST00000288602.6:c.341C>G	p.Ser114Cys	p.S114C	ENST00000288602	NM_004333.4	114	tCt/tGt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5123078	5123078	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	54	393	0	ENST00000381652.3:c.3134A>G	p.Tyr1045Cys	p.Y1045C	ENST00000381652	NM_004972.3	1045	tAt/tGt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101909941	101909941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	12	161	0	ENST00000374994.4:c.1261C>G	p.His421Asp	p.H421D	ENST00000374994	NM_004612.2	421	Cat/Gat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034472	47034475	+	frameshift_variant	Frame_Shift_Del	DEL	GATG	GATG	-			P-0045489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	142	323	0	ENST00000329236.7:c.332_335del	p.Met111LysfsTer77	p.M111Kfs*77	ENST00000329236	NM_001204466.1	109	cGATGg/cg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	45	199	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0045490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	39	391	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166275	32166275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	61	516	1	ENST00000375023.3:c.4679C>T	p.Ala1560Val	p.A1560V	ENST00000375023	NM_004557.3	1560	gCg/gTg																																																																														
RB1	5925	MSKCC	GRCh37	13	49033813	49033837	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATTCCCACAGTGTATCGGCTAGCC	TATTCCCACAGTGTATCGGCTAGCC	-			P-0045490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	29	204	0	ENST00000267163.4:c.1961-8_1977del		p.X654_splice	ENST00000267163	NM_000321.2	654																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41514464	41514464	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	41	380	0	ENST00000373198.4:c.197A>G	p.Asp66Gly	p.D66G	ENST00000373198	NM_133170.3	66	gAc/gGc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458272	12458272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	55	375	0	ENST00000287820.6:c.889C>T	p.Pro297Ser	p.P297S	ENST00000287820	NM_015869.4	297	Ccc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965707	93965707	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	18	248	0	ENST00000369303.4:c.2221G>T	p.Gly741Ter	p.G741*	ENST00000369303	NM_004440.3	741	Gga/Tga																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	194	391	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938394	44938394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	118	138	0	ENST00000377967.4:c.2942T>A	p.Leu981Gln	p.L981Q	ENST00000377967	NM_021140.2	981	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	242	577	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0045495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	137	275	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0045495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	40	656	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0045495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	71	217	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	111	280	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	205	473	0	ENST00000206249.3:c.1609T>G	p.Tyr537Asp	p.Y537D	ENST00000206249	NM_000125.3	537	Tat/Gat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023921	27023922	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0045495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	10	62	0	ENST00000324856.7:c.1027_1028del	p.Ala343SerfsTer56	p.A343Sfs*56	ENST00000324856	NM_006015.4	343	GCa/a																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087963	27087964	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0045495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	116	411	0	ENST00000324856.7:c.2251+1dup		p.-750fs	ENST00000324856	NM_006015.4	750	-/G																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692998	89693051	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGACAAAAAGGTAAGTTATTTTTTGATGTTTTTCCTTTCCTCTTCCTGGATCT	GAGACAAAAAGGTAAGTTATTTTTTGATGTTTTTCCTTTCCTCTTCCTGGATCT	-			P-0045495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	125	299	0	ENST00000371953.3:c.486_492+47del		p.X162_splice	ENST00000371953	NM_000314.4	162																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	138	478	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0045496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	38	303	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	47	267	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	76	439	0	ENST00000269305.4:c.833C>A	p.Pro278His	p.P278H	ENST00000269305	NM_001126112.2	278	cCt/cAt																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39305347	39305347	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	83	350	0	ENST00000373001.3:c.1078C>T	p.Arg360Ter	p.R360*	ENST00000373001	NM_022157.3	360	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	64	311	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	62	249	0				ENST00000310581	NM_198253.2																																																																																
VHL	7428	MSKCC	GRCh37	3	10188248	10188252	+	frameshift_variant	Frame_Shift_Del	DEL	AACCA	AACCA	-			P-0045506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	115	568	0	ENST00000256474.2:c.394_398del	p.Gln132Ter	p.Q132*	ENST00000256474	NM_000551.3	131	AACCAa/a																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940532	49940532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	186	808	1	ENST00000296474.3:c.511C>T	p.Pro171Ser	p.P171S	ENST00000296474	NM_002447.2	171	Ccc/Tcc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52677269	52677269	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	79	443	0	ENST00000394830.3:c.990T>A	p.Tyr330Ter	p.Y330*	ENST00000394830	NM_018313.4	330	taT/taA																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	160	416	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	54	399	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105645	11105645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	357	442	0	ENST00000344626.4:c.1561C>T	p.Arg521Trp	p.R521W	ENST00000344626	NM_003072.3	521	Cgg/Tgg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713171	30713171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	223	311	0	ENST00000359013.4:c.571C>T	p.Gln191Ter	p.Q191*	ENST00000359013	NM_001024847.2	191	Caa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	11	319	0	ENST00000263967.3:c.3061T>A	p.Tyr1021Asn	p.Y1021N	ENST00000263967	NM_006218.2	1021	Tac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971016	21971016	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	16	503	0	ENST00000304494.5:c.342del	p.Val115TrpfsTer31	p.V115Wfs*31	ENST00000304494	NM_000077.4	114	ccC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971016	21971016	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	16	503	0	ENST00000304494.5:c.342del	p.Val115TrpfsTer31	p.V115Wfs*31	ENST00000304494	NM_000077.4	114	ccC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971016	21971016	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	16	503	0	ENST00000304494.5:c.342del	p.Val115TrpfsTer31	p.V115Wfs*31	ENST00000304494	NM_000077.4	114	ccC/cc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260833	16260833	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	417	498	0	ENST00000375759.3:c.8098C>G	p.Leu2700Val	p.L2700V	ENST00000375759	NM_015001.2	2700	Ctt/Gtt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261044	16261044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	321	468	0	ENST00000375759.3:c.8309C>T	p.Ser2770Leu	p.S2770L	ENST00000375759	NM_015001.2	2770	tCa/tTa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56415066	56415066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	209	270	0	ENST00000348428.3:c.2467G>C	p.Glu823Gln	p.E823Q	ENST00000348428	NM_006785.3	823	Gaa/Caa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11095987	11095987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	61	618	0	ENST00000344626.4:c.263del	p.Pro88ArgfsTer6	p.P88Rfs*6	ENST00000344626	NM_003072.3	87	gaC/ga																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652048	36652049	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACCACTGGAGGGTG			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	175	676	0	ENST00000244741.5:c.173_186dup	p.Phe63HisfsTer90	p.F63Hfs*90	ENST00000244741	NM_000389.4	57	aca/acACCACTGGAGGGTGa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778042	135778042	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	23	460	0	ENST00000298552.3:c.2341C>T	p.Gln781Ter	p.Q781*	ENST00000298552	NM_001162426.1	781	Cag/Tag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786058	135786062	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGG	AGAGG	-			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	59	532	0	ENST00000298552.3:c.1159_1163del	p.Pro387GlyfsTer17	p.P387Gfs*17	ENST00000298552	NM_001162426.1	387	CCTCTg/g																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786906	135786907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	25	370	0	ENST00000298552.3:c.962dup	p.Asn321LysfsTer20	p.N321Kfs*20	ENST00000298552	NM_001162426.1	321	aat/aaAt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797265	135797266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	13	212	0	ENST00000298552.3:c.603dup	p.Phe202LeufsTer16	p.F202Lfs*16	ENST00000298552	NM_001162426.1	201	-/C																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797301	135797307	+	frameshift_variant	Frame_Shift_Del	DEL	GATGAAA	GATGAAA	-			P-0045507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	11	216	0	ENST00000298552.3:c.562_568del	p.Phe188AlafsTer20	p.F188Afs*20	ENST00000298552	NM_001162426.1	188	TTTCATCgc/gc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912874	32912874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	104	331	0	ENST00000380152.3:c.4382C>T	p.Ser1461Phe	p.S1461F	ENST00000380152		1461	tCc/tTc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	353	798	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16068445	16068445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	26	91	0	ENST00000268712.3:c.466C>T	p.Pro156Ser	p.P156S	ENST00000268712	NM_006311.3	156	Cca/Tca																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164440	36164440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	83	250	0	ENST00000300305.3:c.1435C>T	p.Pro479Ser	p.P479S	ENST00000300305		479	Ccc/Tcc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162050	47162050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	123	299	0	ENST00000409792.3:c.4076C>T	p.Ser1359Phe	p.S1359F	ENST00000409792	NM_014159.6	1359	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189587167	189587167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	79	319	0	ENST00000264731.3:c.1184C>T	p.Ser395Phe	p.S395F	ENST00000264731	NM_003722.4	395	tCc/tTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	119	349	0	ENST00000288602.6:c.1798_1799delGTinsAG	p.Val600Arg	p.V600R	ENST00000288602	NM_004333.4	600	GTg/AGg																																																																														
PAK7	0	MSKCC	GRCh37	20	9520159	9520159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	82	412	0	ENST00000353224.5:c.2110G>A	p.Gly704Ser	p.G704S	ENST00000353224	NM_177990.2	704	Ggt/Agt																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73775203	73775203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	113	565	0	ENST00000254810.4:c.53G>T	p.Arg18Leu	p.R18L	ENST00000254810	NM_005324.3	18	cGc/cTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612029	189612029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	148	398	0	ENST00000264731.3:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000264731	NM_003722.4	594	cGa/cAa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729162	66729162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	163	537	0	ENST00000307102.5:c.370C>T	p.Pro124Ser	p.P124S	ENST00000307102	NM_002755.3	124	Ccg/Tcg																																																																														
KDR	3791	MSKCC	GRCh37	4	55964332	55964332	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	142	394	0	ENST00000263923.4:c.2481G>A	p.Trp827Ter	p.W827*	ENST00000263923	NM_002253.2	827	tgG/tgA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969150	93969150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	115	320	0	ENST00000369303.4:c.1846G>A	p.Asp616Asn	p.D616N	ENST00000369303	NM_004440.3	616	Gac/Aac																																																																														
MGA	23269	MSKCC	GRCh37	15	41961969	41961969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	173	416	2	ENST00000219905.7:c.877C>T	p.Arg293Cys	p.R293C	ENST00000219905	NM_001164273.1	293	Cgt/Tgt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38314898	38314898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	95	425	0	ENST00000425967.3:c.166C>T	p.Pro56Ser	p.P56S	ENST00000425967	NM_001174067.1	56	Ccg/Tcg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	113	258	0				ENST00000310581	NM_198253.2																																																																																
MEN1	4221	MSKCC	GRCh37	11	64575379	64575379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	268	578	0	ENST00000337652.1:c.653C>T	p.Ala218Val	p.A218V	ENST00000337652	NM_130803.2	218	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433019	49433019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	80	585	1	ENST00000301067.7:c.8352G>A	p.Met2784Ile	p.M2784I	ENST00000301067	NM_003482.3	2784	atG/atA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444261	49444261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	283	734	0	ENST00000301067.7:c.3110C>T	p.Ser1037Phe	p.S1037F	ENST00000301067	NM_003482.3	1037	tCc/tTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28891678	28891678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	192	555	0	ENST00000282397.4:c.3343G>A	p.Glu1115Lys	p.E1115K	ENST00000282397	NM_002019.4	1115	Gaa/Aaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243877	41243877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	119	477	0	ENST00000357654.3:c.3671C>T	p.Pro1224Leu	p.P1224L	ENST00000357654	NM_007294.3	1224	cCc/cTc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78882610	78882610	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	97	423	0	ENST00000306801.3:c.2402-1G>A		p.X801_splice	ENST00000306801	NM_020761.2	801																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11170740	11170740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	298	661	0	ENST00000344626.4:c.4788G>C	p.Lys1596Asn	p.K1596N	ENST00000344626	NM_003072.3	1596	aaG/aaC																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308353	15308354	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	229	677	1	ENST00000263388.2:c.154_155delinsAA	p.Gly52Lys	p.G52K	ENST00000263388	NM_000435.2	52	GGa/AAa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131927092	131927092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	21	215	0	ENST00000265335.6:c.1629A>C	p.Lys543Asn	p.K543N	ENST00000265335		543	aaA/aaC																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032149	26032149	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	143	445	1	ENST00000244661.2:c.140T>C	p.Val47Ala	p.V47A	ENST00000244661	NM_003537.3	47	gTg/gCg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729716	41729717	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	241	467	0	ENST00000242208.4:c.812dup	p.Lys272GlufsTer5	p.K272Efs*5	ENST00000242208	NM_002192.2	271	aag/aaAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030872	69030872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	76	334	0	ENST00000288368.4:c.3414G>A	p.Met1138Ile	p.M1138I	ENST00000288368	NM_024870.2	1138	atG/atA																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737451	145737451	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	130	746	0	ENST00000428558.2:c.3237-1G>A		p.X1079_splice	ENST00000428558	NM_004260.3	1079																																																																															
PDCD1LG2	80380	MSKCC	GRCh37	9	5549434	5549434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	319	485	0	ENST00000397747.3:c.461C>T	p.Ser154Phe	p.S154F	ENST00000397747	NM_025239.3	154	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	246	533	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0045511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	95	273	2	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
PAK7	0	MSKCC	GRCh37	20	9538257	9538257	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	161	344	0	ENST00000353224.5:c.1741C>T	p.Arg581Trp	p.R581W	ENST00000353224	NM_177990.2	581	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175504	112175504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	22	296	0	ENST00000257430.4:c.4213G>A	p.Val1405Ile	p.V1405I	ENST00000257430	NM_000038.5	1405	Gtt/Att																																																																														
RAD50	10111	MSKCC	GRCh37	5	131940587	131940587	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	62	237	0	ENST00000265335.6:c.2614T>C	p.Ser872Pro	p.S872P	ENST00000265335		872	Tct/Cct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	9	384	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	6975	436	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221131	5221131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201447856		P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	191	626	0	ENST00000357368.4:c.3335C>T	p.Thr1112Met	p.T1112M	ENST00000357368	NM_002850.3	1112	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	275	438	0	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266821	198266821	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	319	438	0	ENST00000335508.6:c.2111T>A	p.Ile704Asn	p.I704N	ENST00000335508	NM_012433.2	704	aTc/aAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	7120	544	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																														
JUN	3725	MSKCC	GRCh37	1	59247813	59247815	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	417	638	0	ENST00000371222.2:c.928_930del	p.Gln310del	p.Q310del	ENST00000371222	NM_002228.3	310	CAG/-																																																																														
JAK1	3716	MSKCC	GRCh37	1	65349089	65349089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	108	442	0	ENST00000342505.4:c.76G>A	p.Glu26Lys	p.E26K	ENST00000342505	NM_002227.2	26	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446460	49446460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	156	491	0	ENST00000301067.7:c.1145C>A	p.Thr382Asn	p.T382N	ENST00000301067	NM_003482.3	382	aCt/aAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829145	72829145	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	338	484	0	ENST00000268489.5:c.7436C>A	p.Ser2479Ter	p.S2479*	ENST00000268489	NM_006885.3	2479	tCg/tAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468453	89468453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	60	277	0	ENST00000336596.2:c.1987C>G	p.Gln663Glu	p.Q663E	ENST00000336596	NM_005233.5	663	Cag/Gag																																																																														
KDR	3791	MSKCC	GRCh37	4	55948779	55948779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	84	353	0	ENST00000263923.4:c.3686G>C	p.Arg1229Pro	p.R1229P	ENST00000263923	NM_002253.2	1229	cGa/cCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507365	8507365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	322	279	0	ENST00000356435.5:c.1613C>A	p.Pro538His	p.P538H	ENST00000356435		538	cCt/cAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	203	467	2	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	244	537	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979365	93979365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	49	278	0	ENST00000369303.4:c.1463G>T	p.Arg488Leu	p.R488L	ENST00000369303	NM_004440.3	488	cGg/cTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636758	8636758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	101	370	0	ENST00000356435.5:c.151C>A	p.Pro51Thr	p.P51T	ENST00000356435		51	Cca/Aca																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040945	47040945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	136	408	0	ENST00000329236.7:c.1241C>T	p.Ser414Leu	p.S414L	ENST00000329236	NM_001204466.1	414	tCg/tTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549443	187549443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	73	501	1	ENST00000441802.2:c.4675G>T	p.Ala1559Ser	p.A1559S	ENST00000441802	NM_005245.3	1559	Gcc/Tcc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741336	17741336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	235	582	0	ENST00000250003.3:c.7C>A	p.Leu3Ile	p.L3I	ENST00000250003	NM_002478.4	3	Cta/Ata																																																																														
RARA	5914	MSKCC	GRCh37	17	38510611	38510611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	173	598	0	ENST00000254066.5:c.865G>T	p.Gly289Trp	p.G289W	ENST00000254066	NM_000964.3	289	Ggg/Tgg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557599	21557599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	188	527	0	ENST00000382592.4:c.2246C>T	p.Pro749Leu	p.P749L	ENST00000382592	NM_014572.2	749	cCt/cTt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30132954	30132954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	298	486	0	ENST00000331968.5:c.647G>T	p.Arg216Leu	p.R216L	ENST00000331968	NM_002742.2	216	cGc/cTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679208	88679208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	131	545	0	ENST00000360948.2:c.829G>A	p.Asp277Asn	p.D277N	ENST00000360948	NM_001012338.2	277	Gac/Aac																																																																														
SLX4	84464	MSKCC	GRCh37	16	3651062	3651062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	157	542	0	ENST00000294008.3:c.1081G>C	p.Glu361Gln	p.E361Q	ENST00000294008	NM_032444.2	361	Gag/Cag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662344	67662344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	55	455	0	ENST00000264010.4:c.1590G>C	p.Lys530Asn	p.K530N	ENST00000264010	NM_006565.3	530	aaG/aaC																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349942	89349942	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	178	719	0	ENST00000301030.4:c.3008A>G	p.His1003Arg	p.H1003R	ENST00000301030	NM_001256183.1	1003	cAc/cGc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59934439	59934439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	39	305	0	ENST00000259008.2:c.359G>T	p.Gly120Val	p.G120V	ENST00000259008	NM_032043.2	120	gGc/gTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7117407	7117407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	82	527	0	ENST00000302850.5:c.3809G>T	p.Arg1270Leu	p.R1270L	ENST00000302850	NM_000208.2	1270	cGc/cTc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24133968	24133969	+	missense_variant	Missense_Mutation	DNP	GA	GA	CT			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	30	319	0	ENST00000263121.7:c.119_120delinsCT	p.Arg40Pro	p.R40P	ENST00000263121	NM_003073.3	40	cGA/cCT																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933680	49933680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	188	665	0	ENST00000296474.3:c.2597C>T	p.Pro866Leu	p.P866L	ENST00000296474	NM_002447.2	866	cCc/cTc																																																																														
ATR	545	MSKCC	GRCh37	3	142272239	142272239	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	87	244	0	ENST00000350721.4:c.2635G>A	p.Ala879Thr	p.A879T	ENST00000350721	NM_001184.3	879	Gcc/Acc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356349	66356349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	72	371	0	ENST00000273854.3:c.1148C>A	p.Thr383Asn	p.T383N	ENST00000273854	NM_004439.5	383	aCt/aAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187516891	187516891	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	59	417	0	ENST00000441802.2:c.13090G>T	p.Glu4364Ter	p.E4364*	ENST00000441802	NM_005245.3	4364	Gaa/Taa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752789	57752789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	103	239	0	ENST00000274289.3:c.1139G>T	p.Arg380Ile	p.R380I	ENST00000274289	NM_006622.3	380	aGa/aTa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514541	149514541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	107	433	0	ENST00000261799.4:c.403C>A	p.Leu135Ile	p.L135I	ENST00000261799	NM_002609.3	135	Cta/Ata																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016209	150016209	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	69	283	0	ENST00000253339.5:c.496+1G>T		p.X166_splice	ENST00000253339		166																																																																															
TSC1	7248	MSKCC	GRCh37	9	135771790	135771790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	138	585	0	ENST00000298552.3:c.3327G>T	p.Met1109Ile	p.M1109I	ENST00000298552	NM_001162426.1	1109	atG/atT																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504171	123504171	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	40	188	0	ENST00000371139.4:c.346+1G>A		p.X116_splice	ENST00000371139	NM_001114937.2	116																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	65	336	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	121	707	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998483	100998483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	41	472	0	ENST00000325455.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000325455	NM_001202474.3	440	aCg/aTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	65	526	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	65	526	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	65	526	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	160	330	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	95	268	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	411	539	1	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139774	55139774	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	187	516	0	ENST00000257290.5:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000257290	NM_006206.4	479	Cga/Tga																																																																														
CBL	867	MSKCC	GRCh37	11	119103162	119103162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	62	387	0	ENST00000264033.4:c.200T>C	p.Val67Ala	p.V67A	ENST00000264033	NM_005188.3	67	gTg/gCg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26978147	26978147	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	100	497	0	ENST00000381527.3:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000381527	NM_001260.1	442	Cag/Tag																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374995	45374996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	183	368	0	ENST00000262160.6:c.847_848insC	p.Asn283ThrfsTer38	p.N283Tfs*38	ENST00000262160	NM_005901.5	283	aat/aCat																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71102789	71102789	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	39	258	0	ENST00000318789.4:c.418C>A	p.Gln140Lys	p.Q140K	ENST00000318789	NM_032682.5	140	Cag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175782	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGGA	AGATGGA	-			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	107	249	0	ENST00000257430.4:c.4491_4497del	p.Asp1498PhefsTer7	p.D1498Ffs*7	ENST00000257430	NM_000038.5	1497	ccAGATGGA/cc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979457	2979457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	101	504	0	ENST00000396946.4:c.790G>C	p.Glu264Gln	p.E264Q	ENST00000396946	NM_032415.4	264	Gag/Cag																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652426	48652426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	142	339	0	ENST00000376670.3:c.1097G>T	p.Gly366Val	p.G366V	ENST00000376670	NM_002049.3	366	gGc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	35	356	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	139	568	0	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
APC	324	MSKCC	GRCh37	5	112174745	112174745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	29	289	0	ENST00000257430.4:c.3454C>T	p.Gln1152Ter	p.Q1152*	ENST00000257430	NM_000038.5	1152	Cag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3799648	3799648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	51	361	0	ENST00000262367.5:c.3816del	p.Asn1272LysfsTer4	p.N1272Kfs*4	ENST00000262367	NM_004380.2	1272	aaT/aa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256961	41256961	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	76	442	0	ENST00000357654.3:c.225A>C	p.Glu75Asp	p.E75D	ENST00000357654	NM_007294.3	75	gaA/gaC																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244288	153244288	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	28	257	0	ENST00000281708.4:c.1869T>G	p.His623Gln	p.H623Q	ENST00000281708	NM_033632.3	623	caT/caG																																																																														
APC	324	MSKCC	GRCh37	5	112175274	112175275	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	29	259	0	ENST00000257430.4:c.3983_3984del	p.Gln1328ProfsTer3	p.Q1328Pfs*3	ENST00000257430	NM_000038.5	1328	cAG/c																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540266	23540266	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	69	437	0	ENST00000380871.4:c.137C>G	p.Thr46Arg	p.T46R	ENST00000380871	NM_006167.3	46	aCg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	118	452	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
MGA	23269	MSKCC	GRCh37	15	42054369	42054369	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	59	235	0	ENST00000219905.7:c.7553A>T	p.Tyr2518Phe	p.Y2518F	ENST00000219905	NM_001164273.1	2518	tAt/tTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29550457	29550475	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCAGCTCACAAATGCTTT	TGCAGCTCACAAATGCTTT	A			P-0045528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	41	105	0	ENST00000358273.4:c.1722-5_1735delinsA		p.X574_splice	ENST00000358273	NM_001042492.2	574																																																																															
NF2	4771	MSKCC	GRCh37	22	30032748	30032748	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	192	322	0	ENST00000338641.4:c.123G>A	p.Trp41Ter	p.W41*	ENST00000338641	NM_000268.3	41	tgG/tgA																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441319	52441319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	223	546	0	ENST00000460680.1:c.451del	p.His151ThrfsTer36	p.H151Tfs*36	ENST00000460680	NM_004656.3	151	Cac/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	470	573	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	11	483	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	27	200	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259091	89259091	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	32	321	0	ENST00000336596.2:c.235A>T	p.Asn79Tyr	p.N79Y	ENST00000336596	NM_005233.5	79	Aac/Tac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984058	2984058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	229	572	0	ENST00000396946.4:c.472del	p.Gln158SerfsTer9	p.Q158Sfs*9	ENST00000396946	NM_032415.4	158	Cag/ag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151853293	151853293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	58	393	0	ENST00000262189.6:c.11809G>A	p.Glu3937Lys	p.E3937K	ENST00000262189	NM_170606.2	3937	Gaa/Aaa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411224	63411224	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	145	628	0	ENST00000330258.3:c.1943A>G	p.Glu648Gly	p.E648G	ENST00000330258	NM_152424.3	648	gAg/gGg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	142	82	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0045531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	254	719	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0045531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	146	181	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98238356	98238356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	179	543	0	ENST00000331920.6:c.1688C>T	p.Ala563Val	p.A563V	ENST00000331920	NM_000264.3	563	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7573944	7573944	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	330	660	1	ENST00000269305.4:c.1083delG	p.Ser362AlafsTer8	p.S362Afs*8	ENST00000269305	NM_001126112.2	361	ggG/gg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	97	473	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	50	261	1	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	164	443	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	291	569	0	ENST00000397062.3:c.246A>T	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057673	27057673	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	291	505	0	ENST00000324856.7:c.1383del	p.Tyr462MetfsTer157	p.Y462Mfs*157	ENST00000324856	NM_006015.4	461	Ggg/gg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900239	101900239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	76	359	0	ENST00000374994.4:c.673C>T	p.Arg225Trp	p.R225W	ENST00000374994	NM_004612.2	225	Cgg/Tgg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65335079	65335079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	63	458	0	ENST00000342505.4:c.562G>A	p.Glu188Lys	p.E188K	ENST00000342505	NM_002227.2	188	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	134	476	1	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	37	351	1	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	253	696	12	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	129	265	8	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	168	394	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	224	511	2	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	253	569	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	199	443	0	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1215	105	820	2	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																														
ERG	2078	MSKCC	GRCh37	21	39795422	39795422	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140580933		P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	241	668	0	ENST00000288319.7:c.298G>A	p.Val100Ile	p.V100I	ENST00000288319	NM_182918.3	100	Gtt/Att																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345759	152345760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	65	247	0	ENST00000359321.1:c.810dup	p.Ile271TyrfsTer8	p.I271Yfs*8	ENST00000359321	NM_005431.1	270	-/T																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900661	3900661	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	309	675	0	ENST00000262367.5:c.435delC	p.Ala146LeufsTer6	p.A146Lfs*6	ENST00000262367	NM_004380.2	145	ccC/cc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65312341	65312341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	204	492	0	ENST00000342505.4:c.1978G>A	p.Asp660Asn	p.D660N	ENST00000342505	NM_002227.2	660	Gac/Aac																																																																														
TEK	7010	MSKCC	GRCh37	9	27158026	27158026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	194	558	2	ENST00000380036.4:c.255del	p.Val86LeufsTer31	p.V86Lfs*31	ENST00000380036	NM_000459.3	84	Aaa/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444960	49444960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	274	531	1	ENST00000301067.7:c.2506del	p.Gln836SerfsTer94	p.Q836Sfs*94	ENST00000301067	NM_003482.3	836	Cag/ag																																																																														
CIC	23152	MSKCC	GRCh37	19	42799176	42799176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	259	631	0	ENST00000575354.2:c.4660G>T	p.Ala1554Ser	p.A1554S	ENST00000575354	NM_015125.3	1554	Gca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433394	49433394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	322	606	2	ENST00000301067.7:c.8053C>T	p.Arg2685Ter	p.R2685*	ENST00000301067	NM_003482.3	2685	Cga/Tga																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950344	17950344	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	329	718	1	ENST00000458235.1:c.1383del	p.Leu462CysfsTer3	p.L462Cfs*3	ENST00000458235	NM_000215.3	461	ggG/gg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948755	71948755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	413	782	0	ENST00000298229.2:c.3470del	p.Gly1157AspfsTer45	p.G1157Dfs*45	ENST00000298229	NM_001567.3	1156	cGg/cg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285245	212285245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	96	392	0	ENST00000342788.4:c.3056C>T	p.Ala1019Val	p.A1019V	ENST00000342788	NM_005235.2	1019	gCt/gTt																																																																														
B2M	567	MSKCC	GRCh37	15	45003764	45003764	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	314	530	0	ENST00000558401.1:c.20T>A	p.Leu7Ter	p.L7*	ENST00000558401	NM_004048.2	7	tTa/tAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220899	36220899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	152	272	0	ENST00000222270.7:c.4949C>T	p.Thr1650Met	p.T1650M	ENST00000222270	NM_014727.1	1650	aCg/aTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437401	110437402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	103	310	0	ENST00000375856.3:c.999dup	p.Ser334GlnfsTer205	p.S334Qfs*205	ENST00000375856	NM_003749.2	333	-/C																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115263321	115263321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	218	464	0	ENST00000438362.2:c.2029G>T	p.Val677Phe	p.V677F	ENST00000438362	NM_001242891.1	677	Gtc/Ttc																																																																														
PARP1	142	MSKCC	GRCh37	1	226568817	226568818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	272	595	0	ENST00000366794.5:c.1251dupG	p.Lys418GlufsTer24	p.K418Efs*24	ENST00000366794	NM_001618.3	417	-/G																																																																														
RET	5979	MSKCC	GRCh37	10	43597896	43597898	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	347	723	1	ENST00000355710.3:c.448_450del	p.Phe150del	p.F150del	ENST00000355710	NM_020975.4	148	tcCTTc/tcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692808	89692813	+	inframe_deletion	In_Frame_Del	DEL	CTAGAA	CTAGAA	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	56	253	0	ENST00000371953.3:c.294_299del	p.Glu99_Leu100del	p.E99_L100del	ENST00000371953	NM_000314.4	98	CTAGAA/-																																																																														
POLE	5426	MSKCC	GRCh37	12	133240622	133240622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	238	487	0	ENST00000320574.5:c.2674T>C	p.Tyr892His	p.Y892H	ENST00000320574	NM_006231.2	892	Tac/Cac																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714276	43714276	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	240	643	0	ENST00000382044.4:c.3877del	p.Ser1293ProfsTer74	p.S1293Pfs*74	ENST00000382044	NM_001141980.1	1293	Tcc/cc																																																																														
CD276	80381	MSKCC	GRCh37	15	73995388	73995388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	193	509	0	ENST00000318443.5:c.694C>T	p.His232Tyr	p.H232Y	ENST00000318443	NM_001024736.1	232	Cac/Tac																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138087	2138087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	392	767	1	ENST00000219476.3:c.5107G>A	p.Val1703Met	p.V1703M	ENST00000219476	NM_000548.3	1703	Gtg/Atg																																																																														
CBFB	865	MSKCC	GRCh37	16	67070587	67070587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	129	242	1	ENST00000412916.2:c.211G>A	p.Ala71Thr	p.A71T	ENST00000412916		71	Gcc/Acc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56390436	56390436	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	64	293	0	ENST00000348428.3:c.1175G>C	p.Arg392Pro	p.R392P	ENST00000348428	NM_006785.3	392	cGt/cCt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229049	36229049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	350	607	1	ENST00000222270.7:c.7829G>A	p.Arg2610His	p.R2610H	ENST00000222270	NM_014727.1	2610	cGc/cAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591088	67591105	+	inframe_deletion	In_Frame_Del	DEL	AAACGTATGAACAGCATT	AAACGTATGAACAGCATT	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	70	258	0	ENST00000274335.5:c.1685_1702del	p.Arg562_Lys567del	p.R562_K567del	ENST00000274335		561	AAACGTATGAACAGCATT/-																																																																														
MSH3	4437	MSKCC	GRCh37	5	80168962	80168962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	97	554	0	ENST00000265081.6:c.3158T>C	p.Val1053Ala	p.V1053A	ENST00000265081	NM_002439.4	1053	gTc/gCc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286944	33286944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	157	655	0	ENST00000374542.5:c.1993A>G	p.Thr665Ala	p.T665A	ENST00000374542	NM_001141970.1	665	Acc/Gcc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852018	128852018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	315	798	1	ENST00000249373.3:c.2090C>T	p.Ala697Val	p.A697V	ENST00000249373	NM_005631.4	697	gCc/gTc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205490	38205490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	300	626	0	ENST00000317025.8:c.200C>A	p.Pro67His	p.P67H	ENST00000317025	NM_023034.1	67	cCt/cAt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372487	55372487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	508	840	0	ENST00000297316.4:c.1180del	p.Ala394ProfsTer60	p.A394Pfs*60	ENST00000297316	NM_022454.3	393	Ggg/gg																																																																														
MYC	4609	MSKCC	GRCh37	8	128750638	128750638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	297	609	0	ENST00000377970.2:c.175G>A	p.Ala59Thr	p.A59T	ENST00000377970	NM_002467.4	59	Gcg/Acg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090515	5090515	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	44	274	0	ENST00000381652.3:c.2831A>G	p.His944Arg	p.H944R	ENST00000381652	NM_004972.3	944	cAt/cGt																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249343	110249343	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	364	716	0	ENST00000374672.4:c.1230T>G	p.Ser410Arg	p.S410R	ENST00000374672	NM_004235.4	410	agT/agG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0045534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	232	399	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	125	279	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101712	27101712	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	249	517	0	ENST00000324856.7:c.4993+1G>A		p.X1665_splice	ENST00000324856	NM_006015.4	1665																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27058083	27058083	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	178	364	0	ENST00000324856.7:c.1793del	p.Pro598LeufsTer21	p.P598Lfs*21	ENST00000324856	NM_006015.4	597	ttC/tt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206648338	206649360	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGCCCCTCCCTGTCCCTGCCTCCACCCTCAGACCAGCGGCAGGCCTGGGACAGATGCTGACAGGACTCAGGTGTCTGACTCCTGCTAATCATTCCATTTAAAATTCCAACTTAAAAATTAAACCTAAAAAAGATTGTACACCAATGTTCACAGCAGCATTATTTACAATAGCCAAAAGGTGGAAACATCCTAACTGTGAAAACAAAATGTGGGAGGTACCTAAAATAGAATATTATTCAGTCTTAAAAGGAAAGAAATTCTGACACCTGCTACAACATGGATGGACCTTGATGACATTATGTTAAGTGAAAAAAGCCAGACACAGAAGGACAAATCCTGTATGATTCCACTCATACATTCATAGAAACAGAAAGTACCATGGTGGTTTCCAGTGGCTGGGGGCAGAGGAGAATGAGGAGTTGTTTAATAAGTATGGTTTCAAGTTTGAAGAATGAGGCCGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCCAAGTGGGCGGATCATTTGAGGTTGGGGGTTTGAGACCAGTCTGGCGAACACGGTGAAACCCTGTCTCTACTAAAAAAATACAAAAATTAGCTGGGTGTGGTGGTGCATGCCTGTAGTTCCAGCCACTTGGGAGGCTGAGGCATGAGAATCGATTGAACCTGGGAGGCAGAGATTGCAGTGAGCTGAGATTGCACCACTGTACTCCAGCCTATGTGTCAGAGTGAGACTCTGTCTCCAAAAAAAAAAAAAAAATTGGAGAATGAGAAAAGTTCTAAGATGGATGGTGTGATGGTGGCACAGCAGCGTGGGTGTGCTTAGTGCCAATGAAGTGTACACTTAAAATTGGTTAAAATGGGAAATTTCGTTATGCATATTTTACCACAATTGAACACCTAATCAAAAGAAGTAATACAAAGAGGGGTGCTGCCCTTGAGGACACAGAGCCACCACCCATCTTGGTTTCCTAGAGAATCCAGATGGTACCTCCATACCCTAGTGTCCTTGAGATGCCCCCTA	GTGAGCCCCTCCCTGTCCCTGCCTCCACCCTCAGACCAGCGGCAGGCCTGGGACAGATGCTGACAGGACTCAGGTGTCTGACTCCTGCTAATCATTCCATTTAAAATTCCAACTTAAAAATTAAACCTAAAAAAGATTGTACACCAATGTTCACAGCAGCATTATTTACAATAGCCAAAAGGTGGAAACATCCTAACTGTGAAAACAAAATGTGGGAGGTACCTAAAATAGAATATTATTCAGTCTTAAAAGGAAAGAAATTCTGACACCTGCTACAACATGGATGGACCTTGATGACATTATGTTAAGTGAAAAAAGCCAGACACAGAAGGACAAATCCTGTATGATTCCACTCATACATTCATAGAAACAGAAAGTACCATGGTGGTTTCCAGTGGCTGGGGGCAGAGGAGAATGAGGAGTTGTTTAATAAGTATGGTTTCAAGTTTGAAGAATGAGGCCGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCCAAGTGGGCGGATCATTTGAGGTTGGGGGTTTGAGACCAGTCTGGCGAACACGGTGAAACCCTGTCTCTACTAAAAAAATACAAAAATTAGCTGGGTGTGGTGGTGCATGCCTGTAGTTCCAGCCACTTGGGAGGCTGAGGCATGAGAATCGATTGAACCTGGGAGGCAGAGATTGCAGTGAGCTGAGATTGCACCACTGTACTCCAGCCTATGTGTCAGAGTGAGACTCTGTCTCCAAAAAAAAAAAAAAAATTGGAGAATGAGAAAAGTTCTAAGATGGATGGTGTGATGGTGGCACAGCAGCGTGGGTGTGCTTAGTGCCAATGAAGTGTACACTTAAAATTGGTTAAAATGGGAAATTTCGTTATGCATATTTTACCACAATTGAACACCTAATCAAAAGAAGTAATACAAAGAGGGGTGCTGCCCTTGAGGACACAGAGCCACCACCCATCTTGGTTTCCTAGAGAATCCAGATGGTACCTCCATACCCTAGTGTCCTTGAGATGCCCCCTA	-			P-0045534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	264	469	0	ENST00000367120.3:c.358+1_359-164del		p.X120_splice	ENST00000367120	NM_014002.3	120																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206649667	206649667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	249	567	0	ENST00000367120.3:c.502G>A	p.Glu168Lys	p.E168K	ENST00000367120	NM_014002.3	168	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532695	187532695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	162	404	1	ENST00000441802.2:c.9698G>A	p.Arg3233His	p.R3233H	ENST00000441802	NM_005245.3	3233	cGt/cAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106196738	106196738	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	24	321	0	ENST00000380013.4:c.5071T>G	p.Ser1691Ala	p.S1691A	ENST00000380013	NM_001127208.2	1691	Tct/Gct																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0045536-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	195	310	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48881457	48881457	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045536-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			194	112	119	0	ENST00000267163.4:c.179T>A	p.Leu60Ter	p.L60*	ENST00000267163	NM_000321.2	60	tTa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574005	7574005	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045536-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	459	619	0	ENST00000269305.4:c.1022T>G	p.Phe341Cys	p.F341C	ENST00000269305	NM_001126112.2	341	tTc/tGc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591096	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAACAGCATTAAACCAGACCTTATCCAGCTGAGAAAGAC	GAACAGCATTAAACCAGACCTTATCCAGCTGAGAAAGAC	-			P-0045536-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	22	245	0	ENST00000274335.5:c.1691_1729del	p.Asn564_Thr576del	p.N564_T576del	ENST00000274335		563	atGAACAGCATTAAACCAGACCTTATCCAGCTGAGAAAGACg/atg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242494	+	protein_altering_variant	In_Frame_Del	DEL	TAAGAGAAGCAACATCTCCGAAAGC	TAAGAGAAGCAACATCTCCGAAAGC	CGAGAGA			P-0045536-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2869	157	345	1	ENST00000275493.2:c.2240_2264delinsCGAGAGA	p.Leu747_Ala755delinsSerArgAsp	p.L747_A755delinsSRD	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCCGAAAGCc/tCGAGAGAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	93	504	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524613	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	38	201	0	ENST00000355739.4:c.2750_2751del	p.Lys917IlefsTer12	p.K917Ifs*12	ENST00000355739	NM_000123.3	915	AAa/a																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	protein_altering_variant	In_Frame_Ins	INS	AA	AA	GGGTT			P-0045537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	286	549	6	ENST00000275493.2:c.2311_2312delinsGGGTT	p.Asn771delinsGlyPhe	p.N771delinsGF	ENST00000275493	NM_005228.3	771	AAc/GGGTTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105966	27105966	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	70	405	1	ENST00000324856.7:c.5577del	p.Phe1859LeufsTer24	p.F1859Lfs*24	ENST00000324856	NM_006015.4	1859	ttC/tt																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599975	28599975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	84	560	3	ENST00000253063.3:c.857G>A	p.Arg286His	p.R286H	ENST00000253063	NM_031459.4	286	cGc/cAc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524718	103524718	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	29	249	0	ENST00000355739.4:c.2853del	p.Lys952AsnfsTer30	p.K952Nfs*30	ENST00000355739	NM_000123.3	950	tGg/tg																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366931	40366931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	349	625	2	ENST00000397332.2:c.266G>T	p.Gly89Val	p.G89V	ENST00000397332	NM_001033082.2	89	gGt/gTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444762	49444762	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	354	837	0	ENST00000301067.7:c.2704G>T	p.Glu902Ter	p.E902*	ENST00000301067	NM_003482.3	902	Gag/Tag																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856205	111856205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	369	314	2	ENST00000341259.2:c.256G>T	p.Gly86Cys	p.G86C	ENST00000341259	NM_005475.2	86	Ggc/Tgc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885801	111885801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	547	582	1	ENST00000341259.2:c.1423G>T	p.Val475Phe	p.V475F	ENST00000341259	NM_005475.2	475	Gtc/Ttc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576202	88576202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	247	480	1	ENST00000360948.2:c.1471C>T	p.Pro491Ser	p.P491S	ENST00000360948	NM_001012338.2	491	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	510	469	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664723	138664723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	146	254	1	ENST00000330315.3:c.842C>A	p.Pro281Gln	p.P281Q	ENST00000330315	NM_023067.3	281	cCg/cAg																																																																														
TET2	54790	MSKCC	GRCh37	4	106157875	106157875	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	149	165	0	ENST00000380013.4:c.2776A>C	p.Asn926His	p.N926H	ENST00000380013	NM_001127208.2	926	Aat/Cat																																																																														
MET	4233	MSKCC	GRCh37	7	116371845	116371845	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	168	263	0	ENST00000397752.3:c.1324A>T	p.Ile442Leu	p.I442L	ENST00000397752	NM_000245.2	442	Ata/Tta																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970994	70970994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	340	458	0	ENST00000276594.2:c.1267C>A	p.Pro423Thr	p.P423T	ENST00000276594	NM_024504.3	423	Ccc/Acc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485806	8485807	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	115	194	1	ENST00000356435.5:c.3010_3011delinsAA	p.Pro1004Lys	p.P1004K	ENST00000356435		1004	CCa/AAa																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15833818	15833818	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	564	320	0	ENST00000307771.7:c.576T>G	p.Asn192Lys	p.N192K	ENST00000307771	NM_005089.3	192	aaT/aaG																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841160	15841160	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	464	269	0	ENST00000307771.7:c.1246del	p.Glu416ArgfsTer?	p.E416Rfs*?	ENST00000307771	NM_005089.3	415	cGg/cg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913182	39913182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	178	276	0	ENST00000378444.4:c.4933C>A	p.Pro1645Thr	p.P1645T	ENST00000378444	NM_001123385.1	1645	Ccc/Acc																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504041	123504041	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	123	116	0	ENST00000371139.4:c.217C>G	p.His73Asp	p.H73D	ENST00000371139	NM_001114937.2	73	Cat/Gat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	121	596	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	48941653	48941653	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	80	204	0	ENST00000267163.4:c.963C>G	p.Tyr321Ter	p.Y321*	ENST00000267163	NM_000321.2	321	taC/taG																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	170	403	0	ENST00000269571.5:c.2305G>C	p.Asp769His	p.D769H	ENST00000269571		769	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	208	652	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910587	29910587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	345	1186	1	ENST00000376809.5:c.127G>A	p.Glu43Lys	p.E43K	ENST00000376809	NM_002116.7	43	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105892	27105892	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	402	510	0	ENST00000324856.7:c.5503C>T	p.Gln1835Ter	p.Q1835*	ENST00000324856	NM_006015.4	1835	Cag/Tag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10277291	10277291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	56	673	0	ENST00000340748.4:c.826G>A	p.Glu276Lys	p.E276K	ENST00000340748		276	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	117	390	0				ENST00000310581	NM_198253.2																																																																																
MTOR	2475	MSKCC	GRCh37	1	11264627	11264627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	230	547	2	ENST00000361445.4:c.3935C>T	p.Pro1312Leu	p.P1312L	ENST00000361445	NM_004958.3	1312	cCg/cTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623894	28623894	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	147	420	0	ENST00000241453.7:c.760C>G	p.Gln254Glu	p.Q254E	ENST00000241453	NM_004119.2	254	Cag/Gag																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135286	30135286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	21	336	0	ENST00000331968.5:c.532G>A	p.Glu178Lys	p.E178K	ENST00000331968	NM_002742.2	178	Gaa/Aaa																																																																														
MITF	4286	MSKCC	GRCh37	3	70014103	70014103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	68	523	0	ENST00000352241.4:c.1267G>C	p.Glu423Gln	p.E423Q	ENST00000352241	NM_198159.2	423	Gag/Cag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671985	30671985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	156	675	1	ENST00000376406.3:c.4975G>A	p.Asp1659Asn	p.D1659N	ENST00000376406	NM_014641.2	1659	Gat/Aat																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139804433	139804433	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	226	676	0	ENST00000247668.2:c.590T>A	p.Ile197Asn	p.I197N	ENST00000247668	NM_021138.3	197	aTc/aAc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139804439	139804439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	221	645	0	ENST00000247668.2:c.596G>C	p.Arg199Pro	p.R199P	ENST00000247668	NM_021138.3	199	cGg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577591	7577591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	347	459	0	ENST00000269305.4:c.690del	p.Thr231ProfsTer16	p.T231Pfs*16	ENST00000269305	NM_001126112.2	230	acC/ac																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	51	377	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	94	286	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	91	274	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	36	790	2	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	43	485	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	51	585	0	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967305	25967305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	46	310	0	ENST00000435504.4:c.1901C>T	p.Ser634Leu	p.S634L	ENST00000435504		634	tCg/tTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	94	405	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	43	463	3	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198193	185198193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	49	441	1	ENST00000265026.3:c.2675C>T	p.Thr892Met	p.T892M	ENST00000265026	NM_004721.4	892	aCg/aTg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193202211	193202211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	58	339	0	ENST00000367435.3:c.1247del	p.Gly416AlafsTer12	p.G416Afs*12	ENST00000367435	NM_024529.4	415	Ggg/gg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61726051	61726052	+	splice_region_variant,intron_variant	Splice_Region	DEL	AA	AA	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	30	191	0	ENST00000401558.2:c.591-4_591-3delTT		p.X197_splice	ENST00000401558	NM_003400.3	197																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805731	32805731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	74	605	0	ENST00000374899.4:c.280G>A	p.Val94Ile	p.V94I	ENST00000374899	NM_018833.2	94	Gtc/Atc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022586	31022586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	48	417	0	ENST00000375687.4:c.2071C>A	p.Leu691Ile	p.L691I	ENST00000375687	NM_015338.5	691	Cta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	95	687	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223725	53223725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	79	728	1	ENST00000375401.3:c.3634C>T	p.Arg1212Trp	p.R1212W	ENST00000375401	NM_004187.3	1212	Cgg/Tgg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120471679	120471679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	40	442	0	ENST00000256646.2:c.3812A>G	p.Asn1271Ser	p.N1271S	ENST00000256646	NM_024408.3	1271	aAc/aGc																																																																														
BARD1	580	MSKCC	GRCh37	2	215610467	215610468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	31	310	1	ENST00000260947.4:c.1788dup	p.Tyr597IlefsTer3	p.Y597Ifs*3	ENST00000260947	NM_000465.2	596	-/A																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032092	10032092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201674066		P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	49	456	0	ENST00000330684.3:c.731G>A	p.Arg244His	p.R244H	ENST00000330684	NM_001134407.1	244	cGc/cAc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225400312	225400312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	39	195	0	ENST00000264414.4:c.311C>T	p.Thr104Met	p.T104M	ENST00000264414	NM_003590.4	104	aCg/aTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923037	39923037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	69	559	1	ENST00000378444.4:c.3671C>T	p.Ala1224Val	p.A1224V	ENST00000378444	NM_001123385.1	1224	gCa/gTa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909490	50909490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	93	729	0	ENST00000440232.2:c.1294C>T	p.Arg432Trp	p.R432W	ENST00000440232	NM_002691.3	432	Cgg/Tgg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982996	201982998	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	114	628	0	ENST00000359651.3:c.847_849del	p.Leu283del	p.L283del	ENST00000359651		282	aTCCtc/atc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435258	49435258	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	169	653	1	ENST00000301067.7:c.6295C>T	p.Arg2099Ter	p.R2099*	ENST00000301067	NM_003482.3	2099	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68842662	68842662	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	40	559	0	ENST00000261769.5:c.602delC	p.Pro201LeufsTer14	p.P201Lfs*14	ENST00000261769	NM_004360.3	200	Ccc/cc																																																																														
RARA	5914	MSKCC	GRCh37	17	38510660	38510660	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	74	563	0	ENST00000254066.5:c.914T>A	p.Leu305His	p.L305H	ENST00000254066	NM_000964.3	305	cTc/cAc																																																																														
RARA	5914	MSKCC	GRCh37	17	38512323	38512324	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	41	532	0	ENST00000254066.5:c.1237dup	p.Met413AsnfsTer33	p.M413Nfs*33	ENST00000254066	NM_000964.3	412	gaa/gAaa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40458406	40458406	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	28	157	0	ENST00000345506.4:c.1621A>G	p.Ser541Gly	p.S541G	ENST00000345506	NM_003152.3	541	Agc/Ggc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117800	70117800	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	27	610	0	ENST00000245479.2:c.270del	p.Met91CysfsTer19	p.M91Cfs*19	ENST00000245479	NM_000346.3	90	Ccc/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15297973	15297973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	35	775	0	ENST00000263388.2:c.1783G>A	p.Gly595Ser	p.G595S	ENST00000263388	NM_000435.2	595	Ggc/Agc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349706	15349711	+	inframe_deletion	In_Frame_Del	DEL	GCTGCT	GCTGCT	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	44	652	2	ENST00000263377.2:c.3863_3868del	p.Gln1288_Gln1289del	p.Q1288_Q1289del	ENST00000263377	NM_058243.2	1288	cAGCAGCgc/cgc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209103827	209103827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	55	352	0	ENST00000345146.2:c.1122G>T	p.Lys374Asn	p.K374N	ENST00000345146	NM_005896.2	374	aaG/aaT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675472	30675472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	107	657	1	ENST00000376406.3:c.2884G>A	p.Ala962Thr	p.A962T	ENST00000376406	NM_014641.2	962	Gcc/Acc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741892	145741892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	94	705	0	ENST00000428558.2:c.611C>T	p.Ala204Val	p.A204V	ENST00000428558	NM_004260.3	204	gCc/gTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938413	76938413	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	36	434	0	ENST00000373344.5:c.2335delA	p.Arg779GlyfsTer24	p.R779Gfs*24	ENST00000373344	NM_000489.3	779	Agg/gg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	98	326	0				ENST00000310581	NM_198253.2																																																																																
TCF3	6929	MSKCC	GRCh37	19	1615698	1615698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145878545		P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	137	733	2	ENST00000344749.5:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000344749	NM_001136139.2	525	Cgg/Tgg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28644733	28644733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	18	245	0	ENST00000241453.7:c.60G>A	p.Met20Ile	p.M20I	ENST00000241453	NM_004119.2	20	atG/atA																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981244	201981245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	43	665	0	ENST00000359651.3:c.325dup	p.Glu109GlyfsTer26	p.E109Gfs*26	ENST00000359651		108	gag/gaGg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981874	201981874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	160	707	0	ENST00000359651.3:c.585del	p.Asp195GlufsTer59	p.D195Efs*59	ENST00000359651		195	gaC/ga																																																																														
FH	2271	MSKCC	GRCh37	1	241676910	241676910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	22	272	2	ENST00000366560.3:c.371C>T	p.Ala124Val	p.A124V	ENST00000366560	NM_000143.3	124	gCa/gTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344410	118344410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	20	220	1	ENST00000534358.1:c.2536G>A	p.Glu846Lys	p.E846K	ENST00000534358	NM_005933.3	846	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344830	118344830	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	19	279	0	ENST00000534358.1:c.2956G>T	p.Glu986Ter	p.E986*	ENST00000534358	NM_005933.3	986	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438297	49438297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	43	469	0	ENST00000301067.7:c.4972G>C	p.Glu1658Gln	p.E1658Q	ENST00000301067	NM_003482.3	1658	Gag/Cag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018211	48018211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	131	441	1	ENST00000234420.5:c.406G>A	p.Asp136Asn	p.D136N	ENST00000234420	NM_000179.2	136	Gac/Aac																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997455	149997455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	26	401	0	ENST00000253339.5:c.2824G>A	p.Glu942Lys	p.E942K	ENST00000253339		942	Gaa/Aaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527541	157527541	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	19	333	0	ENST00000346085.5:c.5266G>C	p.Glu1756Gln	p.E1756Q	ENST00000346085	NM_020732.3	1756	Gaa/Caa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527885	157527885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	29	427	0	ENST00000346085.5:c.5610G>C	p.Glu1870Asp	p.E1870D	ENST00000346085	NM_020732.3	1870	gaG/gaC																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528303	157528303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	33	571	0	ENST00000346085.5:c.6028G>A	p.Asp2010Asn	p.D2010N	ENST00000346085	NM_020732.3	2010	Gat/Aat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528900	157528900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	458	0	ENST00000346085.5:c.6625G>A	p.Asp2209Asn	p.D2209N	ENST00000346085	NM_020732.3	2209	Gac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44911001	44911002	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	56	247	0	ENST00000377967.4:c.705_706del	p.Asn236SerfsTer26	p.N236Sfs*26	ENST00000377967	NM_021140.2	234	acAGag/acag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528267	157528269	+	missense_variant	Missense_Mutation	ONP	GAG	GAG	AAA			P-0045548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	26	487	0	ENST00000346085.5:c.5992_5994delinsAAA	p.Glu1998Lys	p.E1998K	ENST00000346085	NM_020732.3	1998	GAG/AAA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0037411-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			138	552	1079	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037411-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			76	435	428	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775614	9775614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037411-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			98	484	1067	1	ENST00000377346.4:c.157G>A	p.Ala53Thr	p.A53T	ENST00000377346	NM_005026.3	53	Gcc/Acc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0037411-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			693	344	1286	14	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																														
APC	324	MSKCC	GRCh37	5	112179566	112179566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037411-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			403	146	478	4	ENST00000257430.4:c.8275C>T	p.Arg2759Cys	p.R2759C	ENST00000257430	NM_000038.5	2759	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	57	231	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RAC2	5880	MSKCC	GRCh37	22	37627415	37627415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	143	615	1	ENST00000249071.6:c.304C>T	p.Arg102Trp	p.R102W	ENST00000249071	NM_002872.4	102	Cgg/Tgg																																																																														
STK11	6794	MSKCC	GRCh37	19	1219343	1219344	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0038685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	108	475	0	ENST00000326873.7:c.396_397del	p.Cys134TrpfsTer28	p.C134Wfs*28	ENST00000326873	NM_000455.4	132	tGC/t																																																																														
APC	324	MSKCC	GRCh37	5	112174205	112174205	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	57	241	0	ENST00000257430.4:c.2915del	p.Gly972ValfsTer8	p.G972Vfs*8	ENST00000257430	NM_000038.5	972	Ggt/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717626	89717632	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCAG	CTGCCAG	-			P-0042711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			121	80	295	1	ENST00000371953.3:c.653_659del	p.Cys218Ter	p.C218*	ENST00000371953	NM_000314.4	217	gtCTGCCAG/gt																																																																														
AR	367	MSKCC	GRCh37	X	66931289	66931289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	55	210	0	ENST00000374690.3:c.1931G>A	p.Gly644Glu	p.G644E	ENST00000374690	NM_000044.3	644	gGa/gAa																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736583	85736583	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	38	180	0	ENST00000370580.1:c.64G>T	p.Glu22Ter	p.E22*	ENST00000370580	NM_003921.4	22	Gaa/Taa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562865	21562865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	81	405	0	ENST00000382592.4:c.1054C>T	p.Arg352Trp	p.R352W	ENST00000382592	NM_014572.2	352	Cgg/Tgg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647254	23647254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	120	555	0	ENST00000261584.4:c.613G>C	p.Glu205Gln	p.E205Q	ENST00000261584	NM_024675.3	205	Gaa/Caa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647455	23647455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	126	470	0	ENST00000261584.4:c.412G>C	p.Glu138Gln	p.E138Q	ENST00000261584	NM_024675.3	138	Gag/Cag																																																																														
RARA	5914	MSKCC	GRCh37	17	38511639	38511639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	107	610	0	ENST00000254066.5:c.1137G>A	p.Met379Ile	p.M379I	ENST00000254066	NM_000964.3	379	atG/atA																																																																														
RARA	5914	MSKCC	GRCh37	17	38511649	38511649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	94	575	0	ENST00000254066.5:c.1147G>A	p.Asp383Asn	p.D383N	ENST00000254066	NM_000964.3	383	Gac/Aac																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246443	41246443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	165	566	0	ENST00000357654.3:c.1105G>C	p.Asp369His	p.D369H	ENST00000357654	NM_007294.3	369	Gat/Cat																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252856	36252856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	75	278	0	ENST00000300305.3:c.506G>C	p.Arg169Thr	p.R169T	ENST00000300305		169	aGa/aCa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442555	52442558	+	frameshift_variant	Frame_Shift_Del	DEL	TAGA	TAGA	-			P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	190	484	0	ENST00000460680.1:c.187_190del	p.Ser63ProfsTer8	p.S63Pfs*8	ENST00000460680	NM_004656.3	63	TCTAcc/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	156	452	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651944	36651947	+	frameshift_variant	Frame_Shift_Del	DEL	CGGC	CGGC	GGA			P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	179	571	1	ENST00000244741.5:c.66_69delinsGGA	p.Phe22LeufsTer9	p.F22Lfs*9	ENST00000244741	NM_000389.4	22	ttCGGC/ttGGA																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651984	36651985	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	237	615	0	ENST00000244741.5:c.108_109del	p.Leu37AsnfsTer10	p.L37Nfs*10	ENST00000244741	NM_000389.4	36	GCg/g																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402728	139402728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	221	703	1	ENST00000277541.6:c.3281G>A	p.Cys1094Tyr	p.C1094Y	ENST00000277541	NM_017617.3	1094	tGc/tAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106144	27106155	+	frameshift_variant	Frame_Shift_Del	DEL	TCTAGCACCTTG	TCTAGCACCTTG	C			P-0043801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	158	461	0	ENST00000324856.7:c.5755_5766delinsC	p.Ser1919HisfsTer6	p.S1919Hfs*6	ENST00000324856	NM_006015.4	1919	TCTAGCACCTTG/C																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0043813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	166	264	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	377	411	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0043813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	160	157	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	47	320	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	200	908	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	502	631	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	502	631	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			747	77	484	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
ALK	238	MSKCC	GRCh37	2	29451860	29451860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	124	670	0	ENST00000389048.3:c.2705G>A	p.Gly902Glu	p.G902E	ENST00000389048	NM_004304.4	902	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	502	631	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340408	8340408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			917	91	561	2	ENST00000356435.5:c.5188C>T	p.Arg1730Trp	p.R1730W	ENST00000356435		1730	Cgg/Tgg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352582	118352582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			763	191	557	1	ENST00000534358.1:c.3787C>T	p.Pro1263Ser	p.P1263S	ENST00000534358	NM_005933.3	1263	Cca/Tca																																																																														
CCND3	896	MSKCC	GRCh37	6	41908239	41908239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1325	146	923	0	ENST00000372991.4:c.283C>G	p.Arg95Gly	p.R95G	ENST00000372991	NM_001760.3	95	Cga/Gga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004402	150004402	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			754	102	475	1	ENST00000253339.5:c.1823A>T	p.Lys608Ile	p.K608I	ENST00000253339		608	aAa/aTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401174	139401174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	99	956	0	ENST00000277541.6:c.3895C>T	p.His1299Tyr	p.H1299Y	ENST00000277541	NM_017617.3	1299	Cac/Tac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139403440	139403441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1464	150	999	0	ENST00000277541.6:c.3052dup	p.Cys1018LeufsTer7	p.C1018Lfs*7	ENST00000277541	NM_017617.3	1018	tgc/tTgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139407917	139407918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGGA			P-0044754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			914	465	869	0	ENST00000277541.6:c.2275_2279dup	p.Cys762ThrfsTer12	p.C762Tfs*12	ENST00000277541	NM_017617.3	760	aac/aaTCCAAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	13	255	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	19	820	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983060	201983060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	87	940	1	ENST00000359651.3:c.909C>A	p.Phe303Leu	p.F303L	ENST00000359651		303	ttC/ttA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212377	36212387	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGTCACCAC	GTGGTCACCAC	-			P-0045356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1367	79	1093	0	ENST00000222270.7:c.2128_2138del	p.Val710SerfsTer3	p.V710Sfs*3	ENST00000222270	NM_014727.1	710	GTGGTCACCACt/t																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	39	346	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	11	510	0	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	43	396	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542201	187542201	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189523191		P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	51	621	0	ENST00000441802.2:c.5539G>A	p.Val1847Ile	p.V1847I	ENST00000441802	NM_005245.3	1847	Gtc/Atc																																																																														
TERT	7015	MSKCC	GRCh37	5	1264586	1264586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	108	1036	0	ENST00000310581.5:c.2776G>A	p.Gly926Ser	p.G926S	ENST00000310581	NM_198253.2	926	Ggc/Agc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	28	543	2	ENST00000375759.3:c.3154delA	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178095	56178095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	50	405	0	ENST00000399503.3:c.3068G>A	p.Arg1023His	p.R1023H	ENST00000399503	NM_005921.1	1023	cGc/cAc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	48	1085	10	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138117	2138117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	56	1230	2	ENST00000219476.3:c.5137C>T	p.Arg1713Cys	p.R1713C	ENST00000219476	NM_000548.3	1713	Cgc/Tgc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610285	10610285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	113	1182	1	ENST00000171111.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000171111	NM_203500.1	142	aCg/aTg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55124955	55124955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	120	929	1	ENST00000257290.5:c.20C>T	p.Ala7Val	p.A7V	ENST00000257290	NM_006206.4	7	gCg/gTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	422358	422358	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	56	450	0	ENST00000399788.2:c.2900C>T	p.Pro967Leu	p.P967L	ENST00000399788	NM_001042603.1	967	cCg/cTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11288751	11288751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	66	744	2	ENST00000361445.4:c.3004C>T	p.Arg1002Ter	p.R1002*	ENST00000361445	NM_004958.3	1002	Cga/Tga																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402834	20402836	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	10	90	0	ENST00000346618.3:c.385_387del	p.Gly129del	p.G129del	ENST00000346618	NM_001949.4	124	aGCGgc/agc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	59	579	1	ENST00000262189.6:c.8389_8390del	p.Lys2797GlyfsTer11	p.K2797Gfs*11	ENST00000262189	NM_170606.2	2797	AAg/g																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391896	139391896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	161	1323	0	ENST00000277541.6:c.6295G>A	p.Asp2099Asn	p.D2099N	ENST00000277541	NM_017617.3	2099	Gac/Aac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061228	38061228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	127	870	0	ENST00000250448.2:c.761del	p.Phe254SerfsTer67	p.F254Sfs*67	ENST00000250448	NM_004496.3	254	tTc/tc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426151	47426151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	29	604	0	ENST00000377045.4:c.671C>T	p.Thr224Met	p.T224M	ENST00000377045	NM_001654.4	224	aCg/aTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571498	95571498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	69	613	1	ENST00000343455.3:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000343455	NM_177438.2	1060	cGc/cAc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141568624	141568624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	51	1050	0	ENST00000220592.5:c.838C>T	p.Arg280Cys	p.R280C	ENST00000220592	NM_012154.3	280	Cgc/Tgc																																																																														
STK40	83931	MSKCC	GRCh37	1	36823851	36823851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	31	578	2	ENST00000373129.3:c.331G>A	p.Gly111Ser	p.G111S	ENST00000373129	NM_032017.1	111	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106171	27106172	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	144	786	0	ENST00000324856.7:c.5782_5783del	p.Lys1928GlufsTer16	p.K1928Efs*16	ENST00000324856	NM_006015.4	1928	AAg/g																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120493446	120493446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	40	518	0	ENST00000256646.2:c.2380G>A	p.Val794Met	p.V794M	ENST00000256646	NM_024408.3	794	Gtg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821821	72821821	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	129	727	0	ENST00000268489.5:c.10354del	p.Leu3452SerfsTer33	p.L3452Sfs*33	ENST00000268489	NM_006885.3	3452	Ctc/tc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795004	242795004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	60	1334	3	ENST00000334409.5:c.205C>T	p.Arg69Cys	p.R69C	ENST00000334409	NM_005018.2	69	Cgc/Tgc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30954249	30954251	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	66	471	0	ENST00000375687.4:c.122_124del	p.Glu41del	p.E41del	ENST00000375687	NM_015338.5	40	gcAGAa/gca																																																																														
MSH3	4437	MSKCC	GRCh37	5	80074643	80074643	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	38	497	0	ENST00000265081.6:c.2423T>C	p.Leu808Pro	p.L808P	ENST00000265081	NM_002439.4	808	cTt/cCt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410121	63410121	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	33	567	0	ENST00000330258.3:c.3046T>C	p.Ser1016Pro	p.S1016P	ENST00000330258	NM_152424.3	1016	Tct/Cct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	87	539	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	276	535	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
AXL	558	MSKCC	GRCh37	19	41748895	41748895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	295	822	1	ENST00000301178.4:c.1420C>T	p.Arg474Trp	p.R474W	ENST00000301178	NM_021913.4	474	Cgg/Tgg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	282	798	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243984	5243984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	358	983	1	ENST00000357368.4:c.1498C>T	p.Arg500Trp	p.R500W	ENST00000357368	NM_002850.3	500	Cgg/Tgg																																																																														
SMO	6608	MSKCC	GRCh37	7	128843242	128843242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	675	991	2	ENST00000249373.3:c.349C>T	p.Arg117Cys	p.R117C	ENST00000249373	NM_005631.4	117	Cgc/Tgc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117878	70117888	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGGCGGC	GCGCAGGCGGC	-			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	187	796	1	ENST00000245479.2:c.353_363del	p.Ala118GlufsTer130	p.A118Efs*130	ENST00000245479	NM_000346.3	116	GCGCAGGCGGCg/g																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575186	48575186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	91	372	0	ENST00000342988.3:c.380G>T	p.Cys127Phe	p.C127F	ENST00000342988	NM_005359.5	127	tGt/tTt																																																																														
APC	324	MSKCC	GRCh37	5	112175784	112175799	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGATTTTCTTGTTC	ATGGATTTTCTTGTTC	-			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	213	359	0	ENST00000257430.4:c.4495_4510del	p.Gly1499ProfsTer3	p.G1499Pfs*3	ENST00000257430	NM_000038.5	1498	gATGGATTTTCTTGTTCa/ga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114799841	114799841	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	299	739	0	ENST00000543371.1:c.508C>T	p.Gln170Ter	p.Q170*	ENST00000543371	NM_001198531.1	170	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	179	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	218	353	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	281	368	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	223	730	1	ENST00000269305.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000269305	NM_001126112.2	196	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	51	222	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302628	15302628	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1418	84	1026	1	ENST00000263388.2:c.730C>T	p.Arg244Ter	p.R244*	ENST00000263388	NM_000435.2	244	Cga/Tga																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200113	128200113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	55	745	1	ENST00000341105.2:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000341105	NM_032638.4	398	Cgg/Tgg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32900414	32900414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	131	408	0	ENST00000380152.3:c.511G>T	p.Val171Leu	p.V171L	ENST00000380152		171	Gtg/Ttg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912173	114912173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	249	635	0	ENST00000543371.1:c.1243C>A	p.Pro415Thr	p.P415T	ENST00000543371	NM_001198531.1	415	Ccc/Acc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17117050	17117050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	288	726	0	ENST00000285071.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000285071	NM_144997.5	553	tgG/tgA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223278	36223278	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1373	345	1215	0	ENST00000222270.7:c.5828C>G	p.Pro1943Arg	p.P1943R	ENST00000222270	NM_014727.1	1943	cCt/cGt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459782	149459782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	100	954	2	ENST00000286301.3:c.425G>A	p.Arg142His	p.R142H	ENST00000286301	NM_005211.3	142	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	465	823	4	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	179	524	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	158	478	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	144	381	1	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	155	442	3	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	132	734	2	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	228	626	5	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517886	187517886	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	36	630	0	ENST00000441802.2:c.12808C>T	p.Arg4270Ter	p.R4270*	ENST00000441802	NM_005245.3	4270	Cga/Tga																																																																														
ABL1	25	MSKCC	GRCh37	9	133729510	133729510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	156	614	4	ENST00000318560.5:c.139C>T	p.Arg47Cys	p.R47C	ENST00000318560	NM_005157.4	47	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	93	394	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	179	752	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	321	943	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	116	716	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	291	752	1	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	149	1022	7	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
FAM175A	0	MSKCC	GRCh37	4	84383999	84383999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150371881		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	57	544	0	ENST00000321945.7:c.853C>T	p.Arg285Trp	p.R285W	ENST00000321945	NM_139076.2	285	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170792	11170792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	155	1003	4	ENST00000344626.4:c.4840C>T	p.Arg1614Trp	p.R1614W	ENST00000344626	NM_003072.3	1614	Cgg/Tgg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	173	841	9	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	190	943	3	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	120	794	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747889	41747889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	154	561	0	ENST00000226382.2:c.880G>A	p.Val294Ile	p.V294I	ENST00000226382	NM_003924.3	294	Gtc/Atc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249029	55249029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	140	822	2	ENST00000275493.2:c.2327G>A	p.Arg776His	p.R776H	ENST00000275493	NM_005228.3	776	cGc/cAc																																																																														
MGA	23269	MSKCC	GRCh37	15	41991141	41991141	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	142	585	0	ENST00000219905.7:c.2092+2T>C		p.X698_splice	ENST00000219905	NM_001164273.1	698																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	130	551	10	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200267	138200267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	131	625	0	ENST00000237289.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000237289	NM_001270507.1	562	cGt/cAt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	306	563	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	86	1163	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	163	1018	1	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286238	66286238	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	83	397	0	ENST00000273854.3:c.1448del	p.Asn483ThrfsTer18	p.N483Tfs*18	ENST00000273854	NM_004439.5	483	aAc/ac																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945726	17945726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	213	956	0	ENST00000458235.1:c.2134G>A	p.Gly712Ser	p.G712S	ENST00000458235	NM_000215.3	712	Ggc/Agc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127460	55127460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	113	541	2	ENST00000257290.5:c.248C>T	p.Thr83Met	p.T83M	ENST00000257290	NM_006206.4	83	aCg/aTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356281	66356282	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	130	630	0	ENST00000273854.3:c.1215_1216del	p.Cys405Ter	p.C405*	ENST00000273854	NM_004439.5	405	tgTGag/tgag																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607487	46607487	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	188	1015	3	ENST00000263734.3:c.1681delC	p.Gln561SerfsTer7	p.Q561Sfs*7	ENST00000263734	NM_001430.4	559	aCc/ac																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118934	70118934	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	71	933	2	ENST00000245479.2:c.506A>G	p.His169Arg	p.H169R	ENST00000245479	NM_000346.3	169	cAc/cGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038781	47038781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	212	1069	1	ENST00000329236.7:c.557G>A	p.Arg186Gln	p.R186Q	ENST00000329236	NM_001204466.1	186	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822330	72822330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	209	1042	1	ENST00000268489.5:c.9845C>T	p.Ala3282Val	p.A3282V	ENST00000268489	NM_006885.3	3282	gCg/gTg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65300294	65300294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	80	358	1	ENST00000342505.4:c.3416G>A	p.Arg1139Gln	p.R1139Q	ENST00000342505	NM_002227.2	1139	cGg/cAg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273060	18273060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	214	1007	0	ENST00000222254.8:c.950C>T	p.Ala317Val	p.A317V	ENST00000222254	NM_005027.3	317	gCc/gTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022792	31022792	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	149	735	0	ENST00000375687.4:c.2277C>A	p.Cys759Ter	p.C759*	ENST00000375687	NM_015338.5	759	tgC/tgA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421701	49421701	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	151	822	2	ENST00000301067.7:c.14528del	p.Lys4843ArgfsTer15	p.K4843Rfs*15	ENST00000301067	NM_003482.3	4843	aAg/ag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310523	65310525	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	130	736	0	ENST00000342505.4:c.2163_2165del	p.Leu722del	p.L722del	ENST00000342505	NM_002227.2	721	ctCCTg/ctg																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117690383	117690383	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	110	585	0	ENST00000369458.3:c.746G>C	p.Ser249Thr	p.S249T	ENST00000369458	NM_024626.3	249	aGt/aCt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156830733	156830733	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	29	105	0	ENST00000524377.1:c.7C>T	p.Arg3Ter	p.R3*	ENST00000524377	NM_002529.3	3	Cga/Tga																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022532	12022532	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	157	866	0	ENST00000396373.4:c.641del	p.Pro214ArgfsTer52	p.P214Rfs*52	ENST00000396373	NM_001987.4	213	tCc/tc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425928	49425928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	221	1039	1	ENST00000301067.7:c.12560G>T	p.Gly4187Val	p.G4187V	ENST00000301067	NM_003482.3	4187	gGg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443547	49443547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	210	851	0	ENST00000301067.7:c.3824C>G	p.Ala1275Gly	p.A1275G	ENST00000301067	NM_003482.3	1275	gCt/gGt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631536	28631536	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	94	478	0	ENST00000241453.7:c.432del	p.Phe144LeufsTer15	p.F144Lfs*15	ENST00000241453	NM_004119.2	144	ttT/tt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032303	10032303	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	131	692	0	ENST00000330684.3:c.520A>G	p.Thr174Ala	p.T174A	ENST00000330684	NM_001134407.1	174	Acc/Gcc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89857944	89857944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	144	665	0	ENST00000389301.3:c.1226A>T	p.Asp409Val	p.D409V	ENST00000389301	NM_000135.2	409	gAc/gTc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40478219	40478219	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	129	510	0	ENST00000264657.5:c.1282-2A>G		p.X428_splice	ENST00000264657	NM_139276.2	428																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117569	70117576	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCAGGA	GAGCAGGA	-			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	150	819	0	ENST00000245479.2:c.39_46del	p.Gln14GlyfsTer235	p.Q14Gfs*235	ENST00000245479	NM_000346.3	13	GAGCAGGAg/g																																																																														
RAF1	5894	MSKCC	GRCh37	3	12633222	12633222	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	90	672	0	ENST00000251849.4:c.1178A>C	p.Glu393Ala	p.E393A	ENST00000251849	NM_002880.3	393	gAg/gCg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250938	153250938	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	58	268	0	ENST00000281708.4:c.1123-1G>A		p.X375_splice	ENST00000281708	NM_033632.3	375																																																																															
TERT	7015	MSKCC	GRCh37	5	1294642	1294642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	180	697	1	ENST00000310581.5:c.359G>A	p.Arg120His	p.R120H	ENST00000310581	NM_198253.2	120	cGc/cAc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323322	31323322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	43	230	0	ENST00000412585.2:c.667G>A	p.Ala223Thr	p.A223T	ENST00000412585	NM_005514.6	223	Gcc/Acc																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997464	149997464	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	158	519	0	ENST00000253339.5:c.2815A>G	p.Ile939Val	p.I939V	ENST00000253339		939	Att/Gtt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859437	151859437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	118	550	0	ENST00000262189.6:c.11225G>A	p.Ser3742Asn	p.S3742N	ENST00000262189	NM_170606.2	3742	aGt/aAt																																																																														
LYN	4067	MSKCC	GRCh37	8	56863271	56863271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	151	635	1	ENST00000519728.1:c.415G>A	p.Ala139Thr	p.A139T	ENST00000519728	NM_002350.3	139	Gca/Aca																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900299	101900299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	95	425	0	ENST00000374994.4:c.733G>A	p.Glu245Lys	p.E245K	ENST00000374994	NM_004612.2	245	Gag/Aag																																																																														
KLF4	9314	MSKCC	GRCh37	9	110251317	110251317	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	144	742	0	ENST00000374672.4:c.20A>G	p.Glu7Gly	p.E7G	ENST00000374672	NM_004235.4	7	gAg/gGg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939696	76939696	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	134	723	0	ENST00000373344.5:c.1052A>T	p.Glu351Val	p.E351V	ENST00000373344	NM_000489.3	351	gAg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	22	535	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	133	976	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	42	128	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																														
HGF	3082	MSKCC	GRCh37	7	81381472	81381472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	57	393	0	ENST00000222390.5:c.589C>T	p.Arg197Cys	p.R197C	ENST00000222390	NM_000601.4	197	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	133	582	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549832	187549832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	45	550	1	ENST00000441802.2:c.4409C>T	p.Ala1470Val	p.A1470V	ENST00000441802	NM_005245.3	1470	gCg/gTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29588751	29588751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	48	290	1	ENST00000358273.4:c.4600C>T	p.Arg1534Ter	p.R1534*	ENST00000358273	NM_001042492.2	1534	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	197	882	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26978094	26978094	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	247	676	1	ENST00000381527.3:c.1271G>A	p.Arg424His	p.R424H	ENST00000381527	NM_001260.1	424	cGt/cAt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	103	497	7	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	159	1044	2	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	126	475	1	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	147	892	7	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905546	50905546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144979965		P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	171	1249	2	ENST00000440232.2:c.674G>A	p.Arg225His	p.R225H	ENST00000440232	NM_002691.3	225	cGt/cAt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99160393	99160393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	150	707	0	ENST00000074304.5:c.872G>A	p.Arg291Gln	p.R291Q	ENST00000074304	NM_001134224.1	291	cGg/cAg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	136	619	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132926	64132926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	131	763	2	ENST00000334205.4:c.1060C>T	p.Arg354Ter	p.R354*	ENST00000334205	NM_003942.2	354	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255142	16255145	+	frameshift_variant	Frame_Shift_Del	DEL	GAGA	GAGA	-			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	55	500	0	ENST00000375759.3:c.2415_2418del	p.Glu805AspfsTer3	p.E805Dfs*3	ENST00000375759	NM_015001.2	803	GAGAga/ga																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523357	176523357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	126	897	1	ENST00000292408.4:c.2014G>A	p.Val672Met	p.V672M	ENST00000292408	NM_213647.1	672	Gtg/Atg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8733794	8733794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	104	663	1	ENST00000356435.5:c.50G>A	p.Arg17His	p.R17H	ENST00000356435		17	cGc/cAc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732957	30732957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	103	528	0	ENST00000359013.4:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000359013	NM_001024847.2	549	Gac/Aac																																																																														
RARA	5914	MSKCC	GRCh37	17	38510560	38510560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	118	656	1	ENST00000254066.5:c.814C>T	p.Arg272Trp	p.R272W	ENST00000254066	NM_000964.3	272	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845477	72845477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	135	668	0	ENST00000268489.5:c.3863C>T	p.Thr1288Met	p.T1288M	ENST00000268489	NM_006885.3	1288	aCg/aTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76813031	76813031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	53	278	0	ENST00000373344.5:c.6590G>A	p.Arg2197His	p.R2197H	ENST00000373344	NM_000489.3	2197	cGt/cAt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420245	88420245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	131	647	0	ENST00000360948.2:c.2441G>A	p.Arg814Gln	p.R814Q	ENST00000360948	NM_001012338.2	814	cGg/cAg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128028956	128028956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	146	738	0	ENST00000285398.2:c.1901G>A	p.Arg634His	p.R634H	ENST00000285398	NM_000122.1	634	cGt/cAt																																																																														
B2M	567	MSKCC	GRCh37	15	45003782	45003782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	166	779	0	ENST00000558401.1:c.38T>C	p.Leu13Pro	p.L13P	ENST00000558401	NM_004048.2	13	cTc/cCc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073616	8073616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	156	581	0	ENST00000377482.5:c.1043C>T	p.Pro348Leu	p.P348L	ENST00000377482	NM_018948.3	348	cCg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439931	56439931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	184	771	0	ENST00000407977.2:c.661C>T	p.Arg221Trp	p.R221W	ENST00000407977		221	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	121	767	3	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433388	49433388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	139	924	0	ENST00000301067.7:c.8059C>T	p.Arg2687Ter	p.R2687*	ENST00000301067	NM_003482.3	2687	Cga/Tga																																																																														
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	110	735	4	ENST00000380036.4:c.1250delC	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832811	3832811	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	124	696	2	ENST00000262367.5:c.1447C>T	p.Arg483Ter	p.R483*	ENST00000262367	NM_004380.2	483	Cga/Tga																																																																														
RXRA	6256	MSKCC	GRCh37	9	137323821	137323821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	156	944	3	ENST00000481739.1:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000481739	NM_002957.4	372	Gcc/Acc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934644	9934644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	85	494	0	ENST00000330684.3:c.1511G>A	p.Arg504Gln	p.R504Q	ENST00000330684	NM_001134407.1	504	cGg/cAg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622369	1622369	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143406385		P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	164	998	0	ENST00000344749.5:c.595G>A	p.Ala199Thr	p.A199T	ENST00000344749	NM_001136139.2	199	Gcc/Acc																																																																														
NF1	4763	MSKCC	GRCh37	17	29585516	29585516	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	19	113	0	ENST00000358273.4:c.4328C>G	p.Ser1443Ter	p.S1443*	ENST00000358273	NM_001042492.2	1443	tCa/tGa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629475	187629475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	128	728	0	ENST00000441802.2:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000441802	NM_005245.3	503	Gca/Aca																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3799627	3799627	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs200782888		P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	27	501	0	ENST00000262367.5:c.3836+1G>A		p.X1279_splice	ENST00000262367	NM_004380.2	1279																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425302	49425302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	171	1004	0	ENST00000301067.7:c.13186C>T	p.Pro4396Ser	p.P4396S	ENST00000301067	NM_003482.3	4396	Cct/Tct																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137186	64137186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	114	741	1	ENST00000334205.4:c.1618G>A	p.Asp540Asn	p.D540N	ENST00000334205	NM_003942.2	540	Gac/Aac																																																																														
CBL	867	MSKCC	GRCh37	11	119170327	119170327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	110	388	0	ENST00000264033.4:c.2557G>A	p.Ala853Thr	p.A853T	ENST00000264033	NM_005188.3	853	Gcc/Acc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279836	46279837	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCAG			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	44	454	6	ENST00000371998.3:c.3786_3791dup	p.Gln1275_Gln1276dup	p.Q1275_Q1276dup	ENST00000371998		1275	-/CAGCAG																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155032	55155032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	92	606	0	ENST00000257290.5:c.2741G>A	p.Arg914Gln	p.R914Q	ENST00000257290	NM_006206.4	914	cGg/cAg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735635	204735635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	102	510	0	ENST00000302823.3:c.436G>A	p.Gly146Arg	p.G146R	ENST00000302823	NM_005214.4	146	Gga/Aga																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345797	152345797	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149186933		P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	111	432	0	ENST00000359321.1:c.773G>A	p.Arg258His	p.R258H	ENST00000359321	NM_005431.1	258	cGt/cAt																																																																														
RET	5979	MSKCC	GRCh37	10	43595972	43595972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	156	993	1	ENST00000355710.3:c.139G>A	p.Gly47Ser	p.G47S	ENST00000355710	NM_020975.4	47	Ggc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	140	921	0	ENST00000301067.7:c.3704G>A	p.Gly1235Asp	p.G1235D	ENST00000301067	NM_003482.3	1235	gGt/gAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444525	49444525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	171	962	0	ENST00000301067.7:c.2846C>T	p.Pro949Leu	p.P949L	ENST00000301067	NM_003482.3	949	cCg/cTg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639666	47639684	+	frameshift_variant	Frame_Shift_Del	DEL	GAATAGTGCTGTATTGCCA	GAATAGTGCTGTATTGCCA	-			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	35	521	0	ENST00000233146.2:c.762_780del	p.Asn254LysfsTer14	p.N254Kfs*14	ENST00000233146	NM_000251.2	253	atGAATAGTGCTGTATTGCCA/at																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247257	153247259	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	74	465	0	ENST00000281708.4:c.1543_1545del	p.Val515del	p.V515del	ENST00000281708	NM_033632.3	515	GTT/-																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149452968	149452968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	188	690	0	ENST00000286301.3:c.978G>T	p.Glu326Asp	p.E326D	ENST00000286301	NM_005211.3	326	gaG/gaT																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518088	176518088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	131	862	0	ENST00000292408.4:c.586C>T	p.Arg196Cys	p.R196C	ENST00000292408	NM_213647.1	196	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638147	176638148	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	85	718	0	ENST00000439151.2:c.2749_2750del	p.Met917AlafsTer2	p.M917Afs*2	ENST00000439151	NM_022455.4	916	gAT/g																																																																														
FLT4	2324	MSKCC	GRCh37	5	180051060	180051060	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	149	752	0	ENST00000261937.6:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000261937	NM_182925.4	475	Cgg/Tgg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555005	106555005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	113	613	0	ENST00000369096.4:c.2122G>T	p.Gly708Trp	p.G708W	ENST00000369096	NM_001198.3	708	Ggg/Tgg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207764	29207764	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	129	614	0	ENST00000240100.2:c.32A>G	p.Asp11Gly	p.D11G	ENST00000240100	NM_001394.6	11	gAc/gGc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146027	38146027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	173	821	0	ENST00000317025.8:c.3479G>T	p.Arg1160Met	p.R1160M	ENST00000317025	NM_023034.1	1160	aGg/aTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965473	68965473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150203239		P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	60	702	1	ENST00000288368.4:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000288368	NM_024870.2	362	cGg/cAg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209526	98209526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	158	976	1	ENST00000331920.6:c.4012C>T	p.Arg1338Cys	p.R1338C	ENST00000331920	NM_000264.3	1338	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	137	267	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	259	455	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	259	455	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1264610	1264610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	225	902	0	ENST00000310581.5:c.2752G>A	p.Ala918Thr	p.A918T	ENST00000310581	NM_198253.2	918	Gct/Act																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	740	532	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
MET	4233	MSKCC	GRCh37	7	116339680	116339680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	580	412	0	ENST00000397752.3:c.542G>A	p.Gly181Glu	p.G181E	ENST00000397752	NM_000245.2	181	gGa/gAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391084	89391084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	643	608	2	ENST00000336596.2:c.1150C>T	p.Pro384Ser	p.P384S	ENST00000336596	NM_005233.5	384	Cct/Tct																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	205	405	0	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285224	198285224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	238	405	0	ENST00000335508.6:c.343C>T	p.Arg115Trp	p.R115W	ENST00000335508	NM_012433.2	115	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376627	8376627	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	228	445	1	ENST00000356435.5:c.4486C>T	p.Arg1496Ter	p.R1496*	ENST00000356435		1496	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411267	63411267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	402	425	0	ENST00000330258.3:c.1900C>T	p.Arg634Cys	p.R634C	ENST00000330258	NM_152424.3	634	Cgt/Tgt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442536	52442536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	277	503	0	ENST00000460680.1:c.209C>T	p.Ser70Phe	p.S70F	ENST00000460680	NM_004656.3	70	tCc/tTc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871196	35871196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	171	360	0	ENST00000303115.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000303115	NM_002185.3	140	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254717	16254717	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	310	529	1	ENST00000375759.3:c.1982G>A	p.Trp661Ter	p.W661*	ENST00000375759	NM_015001.2	661	tGg/tAg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509537	106509537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	751	626	0	ENST00000359195.3:c.1531G>A	p.Glu511Lys	p.E511K	ENST00000359195	NM_002649.2	511	Gag/Aag																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38631980	38631981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	180	516	0	ENST00000299084.4:c.471dup	p.Gln158SerfsTer9	p.Q158Sfs*9	ENST00000299084	NM_152594.2	156	ctt/cTtt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020458	69020458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	337	602	0	ENST00000288368.4:c.2830G>A	p.Glu944Lys	p.E944K	ENST00000288368	NM_024870.2	944	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030850	69030850	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150128151		P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	242	436	0	ENST00000288368.4:c.3392C>T	p.Ser1131Leu	p.S1131L	ENST00000288368	NM_024870.2	1131	tCg/tTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41574718	41574718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	450	875	0	ENST00000263253.7:c.7003C>T	p.Pro2335Ser	p.P2335S	ENST00000263253	NM_001429.3	2335	Cct/Tct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257642	16257643	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	270	545	0	ENST00000375759.3:c.4907_4908delinsTT	p.Ser1636Phe	p.S1636F	ENST00000375759	NM_015001.2	1636	tCC/tTT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343829	118343829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	243	571	0	ENST00000534358.1:c.1955G>A	p.Arg652Gln	p.R652Q	ENST00000534358	NM_005933.3	652	cGa/cAa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623873	28623873	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	173	469	0	ENST00000241453.7:c.781T>A	p.Phe261Ile	p.F261I	ENST00000241453	NM_004119.2	261	Ttt/Att																																																																														
FLT1	2321	MSKCC	GRCh37	13	28971206	28971206	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	141	273	0	ENST00000282397.4:c.1552-1G>A		p.X518_splice	ENST00000282397	NM_002019.4	518																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40682076	40682076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	237	617	0	ENST00000249776.8:c.631G>A	p.Glu211Lys	p.E211K	ENST00000249776	NM_033286.3	211	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68847232	68847232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	127	488	0	ENST00000261769.5:c.1154C>T	p.Pro385Leu	p.P385L	ENST00000261769	NM_004360.3	385	cCt/cTt																																																																														
CD79B	974	MSKCC	GRCh37	17	62007147	62007147	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	392	608	0	ENST00000392795.3:c.535T>A	p.Phe179Ile	p.F179I	ENST00000392795	NM_001039933.1	179	Ttc/Atc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622187	1622187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	456	884	1	ENST00000344749.5:c.688C>T	p.Pro230Ser	p.P230S	ENST00000344749	NM_001136139.2	230	Ccc/Tcc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1632347	1632347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	447	863	1	ENST00000344749.5:c.203C>T	p.Ser68Phe	p.S68F	ENST00000344749	NM_001136139.2	68	tCc/tTc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47707833	47707833	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	187	274	0	ENST00000233146.2:c.2459-2A>T		p.X820_splice	ENST00000233146	NM_000251.2	820																																																																															
PMS1	5378	MSKCC	GRCh37	2	190728905	190728905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	151	316	0	ENST00000441310.2:c.2293C>T	p.His765Tyr	p.H765Y	ENST00000441310	NM_000534.4	765	Cat/Tat																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023548	31023549	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	552	498	0	ENST00000375687.4:c.3033_3034delinsAA	p.Asp1012Asn	p.D1012N	ENST00000375687	NM_015338.5	1011	gaGGac/gaAAac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162863	47162863	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	235	417	1	ENST00000409792.3:c.3263C>A	p.Ser1088Tyr	p.S1088Y	ENST00000409792	NM_014159.6	1088	tCt/tAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390989	89390989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	428	450	1	ENST00000336596.2:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000336596	NM_005233.5	352	gGa/gAa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38982058	38982058	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	134	492	0	ENST00000357387.3:c.664C>T	p.Arg222Ter	p.R222*	ENST00000357387	NM_152756.3	222	Cga/Tga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287329	33287329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1327	323	561	0	ENST00000374542.5:c.1768A>G	p.Arg590Gly	p.R590G	ENST00000374542	NM_001141970.1	590	Agg/Ggg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38172290	38172290	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	78	298	0	ENST00000317025.8:c.2117T>G	p.Ile706Ser	p.I706S	ENST00000317025	NM_023034.1	706	aTt/aGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971061	21971062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGG			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	183	388	0	ENST00000304494.5:c.296_297insCCCG	p.Ala100ProfsTer21	p.A100Pfs*21	ENST00000304494	NM_000077.4	99	cgg/cgCCCGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971061	21971062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGG			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	183	388	0	ENST00000304494.5:c.296_297insCCCG	p.Ala100ProfsTer21	p.A100Pfs*21	ENST00000304494	NM_000077.4	99	cgg/cgCCCGg																																																																														
TEK	7010	MSKCC	GRCh37	9	27220136	27220136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	263	551	0	ENST00000380036.4:c.3193G>A	p.Asp1065Asn	p.D1065N	ENST00000380036	NM_000459.3	1065	Gat/Aat																																																																														
SYK	6850	MSKCC	GRCh37	9	93606258	93606258	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	356	852	1	ENST00000375746.1:c.78A>T	p.Glu26Asp	p.E26D	ENST00000375746	NM_001174167.1	26	gaA/gaT																																																																														
ABL1	25	MSKCC	GRCh37	9	133748257	133748258	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	294	606	0	ENST00000318560.5:c.918_919delinsTT	p.Arg307Trp	p.R307W	ENST00000318560	NM_005157.4	306	acCCgg/acTTgg																																																																														
MPL	4352	MSKCC	GRCh37	1	43804317	43804317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	463	818	0	ENST00000372470.3:c.317C>T	p.Pro106Leu	p.P106L	ENST00000372470	NM_005373.2	106	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	120	487	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0045378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	96	397	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579331	7579331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	139	863	0	ENST00000269305.4:c.356C>G	p.Ala119Gly	p.A119G	ENST00000269305	NM_001126112.2	119	gCc/gGc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164727	36164727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	178	1027	2	ENST00000300305.3:c.1148C>T	p.Pro383Leu	p.P383L	ENST00000300305		383	cCg/cTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68867214	68867214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	56	678	1	ENST00000261769.5:c.2461G>T	p.Asp821Tyr	p.D821Y	ENST00000261769	NM_004360.3	821	Gac/Tac																																																																														
XPO1	7514	MSKCC	GRCh37	2	61712994	61712994	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	52	573	0	ENST00000401558.2:c.2417T>C	p.Ile806Thr	p.I806T	ENST00000401558	NM_003400.3	806	aTa/aCa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693002	89693003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	250	451	0	ENST00000371953.3:c.491dupA	p.Val166SerfsTer14	p.V166Sfs*14	ENST00000371953	NM_000314.4	162	-/A																																																																														
NF1	4763	MSKCC	GRCh37	17	29559198	29559198	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0045380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	157	542	0	ENST00000358273.4:c.3305T>G	p.Leu1102Ter	p.L1102*	ENST00000358273	NM_001042492.2	1102	tTa/tGa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662185	227662185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	757	1092	0	ENST00000305123.5:c.1270G>C	p.Gly424Arg	p.G424R	ENST00000305123	NM_005544.2	424	Ggt/Cgt																																																																														
TET2	54790	MSKCC	GRCh37	4	106156362	106156362	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	176	514	0	ENST00000380013.4:c.1263A>T	p.Glu421Asp	p.E421D	ENST00000380013	NM_001127208.2	421	gaA/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	86	585	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912656		P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2544	316	446	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416976	416976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2038	270	325	0	ENST00000399788.2:c.3574C>T	p.Pro1192Ser	p.P1192S	ENST00000399788	NM_001042603.1	1192	Cct/Tct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1568	252	330	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1568	252	330	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2422	298	503	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390982	89390982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1643	223	288	0	ENST00000336596.2:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000336596	NM_005233.5	350	Gac/Aac																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023408	31023408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2144	257	325	0	ENST00000375687.4:c.2893C>T	p.Arg965Ter	p.R965*	ENST00000375687	NM_015338.5	965	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023754	27023754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1321	226	292	0	ENST00000324856.7:c.860C>T	p.Pro287Leu	p.P287L	ENST00000324856	NM_006015.4	287	cCc/cTc																																																																														
ALK	238	MSKCC	GRCh37	2	29445424	29445424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2833	343	550	0	ENST00000389048.3:c.3409G>A	p.Gly1137Arg	p.G1137R	ENST00000389048	NM_004304.4	1137	Gga/Aga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1568	252	330	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347924	347924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2445	321	672	0	ENST00000262320.3:c.1582G>A	p.Gly528Ser	p.G528S	ENST00000262320	NM_003502.3	528	Ggc/Agc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576273	88576273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1953	216	294	0	ENST00000360948.2:c.1400C>T	p.Pro467Leu	p.P467L	ENST00000360948	NM_001012338.2	467	cCc/cTc																																																																														
AXL	558	MSKCC	GRCh37	19	41743948	41743948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2695	321	624	0	ENST00000301178.4:c.883C>T	p.Arg295Trp	p.R295W	ENST00000301178	NM_021913.4	295	Cgg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41566478	41566478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1620	442	239	0	ENST00000263253.7:c.4355C>T	p.Pro1452Leu	p.P1452L	ENST00000263253	NM_001429.3	1452	cCt/cTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715509	117715509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	104	182	0	ENST00000368508.3:c.980G>A	p.Gly327Glu	p.G327E	ENST00000368508	NM_002944.2	327	gGa/gAa																																																																														
REL	5966	MSKCC	GRCh37	2	61144086	61144086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2058	219	382	0	ENST00000295025.8:c.469C>T	p.Pro157Ser	p.P157S	ENST00000295025	NM_002908.2	157	Cct/Tct																																																																														
NSD1	64324	MSKCC	GRCh37	5	176715855	176715855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2291	255	362	0	ENST00000439151.2:c.6187C>T	p.Leu2063Phe	p.L2063F	ENST00000439151	NM_022455.4	2063	Ctt/Ttt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865537	57865537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2396	307	578	0	ENST00000228682.2:c.3014G>A	p.Gly1005Glu	p.G1005E	ENST00000228682	NM_005269.2	1005	gGa/gAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55124952	55124952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2877	346	445	0	ENST00000257290.5:c.17C>T	p.Pro6Leu	p.P6L	ENST00000257290	NM_006206.4	6	cCg/cTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189604240	189604240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2639	320	396	0	ENST00000264731.3:c.1407G>A	p.Met469Ile	p.M469I	ENST00000264731	NM_003722.4	469	atG/atA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857250	9857250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2399	288	426	1	ENST00000330684.3:c.4151C>T	p.Ser1384Leu	p.S1384L	ENST00000330684	NM_001134407.1	1384	tCg/tTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046405	69046405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2363	275	415	0	ENST00000288368.4:c.3878G>A	p.Ser1293Asn	p.S1293N	ENST00000288368	NM_024870.2	1293	aGc/aAc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937985	36937985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2477	292	662	2	ENST00000361632.4:c.851C>T	p.Pro284Leu	p.P284L	ENST00000361632		284	cCc/cTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670237	134670237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2368	256	346	1	ENST00000398015.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000398015	NM_004441.4	50	Gaa/Aaa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109947	115109947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2044	286	481	0	ENST00000257566.3:c.1931C>T	p.Ser644Phe	p.S644F	ENST00000257566	NM_016569.3	644	tCc/tTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11199414	11199414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2397	361	396	0	ENST00000361445.4:c.5077C>T	p.His1693Tyr	p.H1693Y	ENST00000361445	NM_004958.3	1693	Cac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295198	1295198	+	upstream_gene_variant	5'Flank	SNP	A	A	C			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	112	197	0				ENST00000310581	NM_198253.2																																																																																
MYOD1	4654	MSKCC	GRCh37	11	17742919	17742919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1916	234	546	0	ENST00000250003.3:c.827C>T	p.Ser276Phe	p.S276F	ENST00000250003	NM_002478.4	276	tCt/tTt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346775	89346775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1806	241	342	0	ENST00000301030.4:c.6175C>T	p.Pro2059Ser	p.P2059S	ENST00000301030	NM_001256183.1	2059	Ccc/Tcc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528471	157528471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2277	285	410	0	ENST00000346085.5:c.6196C>T	p.Pro2066Ser	p.P2066S	ENST00000346085	NM_020732.3	2066	Ccc/Tcc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59853910	59853910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1527	189	251	1	ENST00000259008.2:c.1949C>T	p.Thr650Ile	p.T650I	ENST00000259008	NM_032043.2	650	aCc/aTc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783650	50783650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1908	218	311	0	ENST00000398568.2:c.41C>T	p.Pro14Leu	p.P14L	ENST00000398568	NM_001042412.1	14	cCc/cTc																																																																														
MYC	4609	MSKCC	GRCh37	8	128752662	128752662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	306	170	0	ENST00000377970.2:c.823G>A	p.Glu275Lys	p.E275K	ENST00000377970	NM_002467.4	275	Gaa/Aaa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729505	41729505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2380	271	438	0	ENST00000242208.4:c.1024C>T	p.Pro342Ser	p.P342S	ENST00000242208	NM_002192.2	342	Ccc/Tcc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937118	36937118	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2405	285	483	0	ENST00000361632.4:c.1201T>C	p.Ser401Pro	p.S401P	ENST00000361632		401	Tca/Cca																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36938246	36938247	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2575	304	625	0	ENST00000361632.4:c.714_715delinsTT	p.Pro239Ser	p.P239S	ENST00000361632		238	agCCct/agTTct																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115279452	115279452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1884	218	358	1	ENST00000438362.2:c.565C>T	p.Pro189Ser	p.P189S	ENST00000438362	NM_001242891.1	189	Cct/Tct																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984386	201984386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2435	331	468	1	ENST00000359651.3:c.1051G>A	p.Val351Ile	p.V351I	ENST00000359651		351	Gtc/Atc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376055	118376055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1849	271	319	1	ENST00000534358.1:c.9448C>T	p.Pro3150Ser	p.P3150S	ENST00000534358	NM_005933.3	3150	Cct/Tct																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944821	31944822	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2582	271	579	0	ENST00000340398.3:c.279_280delinsAA	p.Glu94Lys	p.E94K	ENST00000340398	NM_001013699.2	93	caGGag/caAAag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444250	49444250	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2905	347	665	0	ENST00000301067.7:c.3121C>T	p.Gln1041Ter	p.Q1041*	ENST00000301067	NM_003482.3	1041	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445878	49445878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2932	345	754	2	ENST00000301067.7:c.1588C>T	p.Pro530Ser	p.P530S	ENST00000301067	NM_003482.3	530	Cct/Tct																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495318	56495318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2555	270	512	0	ENST00000267101.3:c.3508C>T	p.Pro1170Ser	p.P1170S	ENST00000267101	NM_001982.3	1170	Ccc/Tcc																																																																														
RB1	5925	MSKCC	GRCh37	13	48942700	48942700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1537	121	163	0	ENST00000267163.4:c.1087G>T	p.Asp363Tyr	p.D363Y	ENST00000267163	NM_000321.2	363	Gat/Tat																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528102	103528103	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2094	203	223	0	ENST00000355739.4:c.3410_3411delinsTT	p.Pro1137Leu	p.P1137L	ENST00000355739	NM_000123.3	1137	cCC/cTT																																																																														
BLM	641	MSKCC	GRCh37	15	91295161	91295161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1286	116	188	0	ENST00000355112.3:c.944C>T	p.Ser315Phe	p.S315F	ENST00000355112	NM_000057.2	315	tCt/tTt																																																																														
BLM	641	MSKCC	GRCh37	15	91346858	91346858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1472	158	306	0	ENST00000355112.3:c.3466G>A	p.Asp1156Asn	p.D1156N	ENST00000355112	NM_000057.2	1156	Gat/Aat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781318	3781318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2648	346	656	0	ENST00000262367.5:c.5047C>T	p.Arg1683Cys	p.R1683C	ENST00000262367	NM_004380.2	1683	Cgc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857262	9857262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2389	270	404	0	ENST00000330684.3:c.4139G>C	p.Gly1380Ala	p.G1380A	ENST00000330684	NM_001134407.1	1380	gGg/gCg																																																																														
CDH1	999	MSKCC	GRCh37	16	68842665	68842665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2620	329	509	0	ENST00000261769.5:c.601C>T	p.Pro201Ser	p.P201S	ENST00000261769	NM_004360.3	201	Cct/Tct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822630	72822630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2215	286	490	0	ENST00000268489.5:c.9545C>T	p.Thr3182Ile	p.T3182I	ENST00000268489	NM_006885.3	3182	aCc/aTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984526	72984526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2546	304	597	0	ENST00000268489.5:c.3058G>A	p.Glu1020Lys	p.E1020K	ENST00000268489	NM_006885.3	1020	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819620	81819621	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2204	235	375	2	ENST00000359376.3:c.26_27delinsTT	p.Ser9Phe	p.S9F	ENST00000359376	NM_002661.3	9	tCC/tTT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347869	89347869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2057	249	456	0	ENST00000301030.4:c.5081G>A	p.Arg1694Lys	p.R1694K	ENST00000301030	NM_001256183.1	1694	aGg/aAg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15935711	15935712	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2098	239	325	1	ENST00000268712.3:c.7221_7222delinsAA	p.Val2408Met	p.V2408M	ENST00000268712	NM_006311.3	2407	gcGGtg/gcAAtg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983787	15983787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2362	267	328	0	ENST00000268712.3:c.3335C>T	p.Pro1112Leu	p.P1112L	ENST00000268712	NM_006311.3	1112	cCc/cTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864686	37864686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2497	320	517	0	ENST00000269571.5:c.338C>T	p.Ala113Val	p.A113V	ENST00000269571		113	gCc/gTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18943158	18943158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	78	115	0	ENST00000262803.5:c.140C>T	p.Pro47Leu	p.P47L	ENST00000262803	NM_002911.3	47	cCc/cTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211501	36211501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2186	295	421	0	ENST00000222270.7:c.1252C>T	p.Pro418Ser	p.P418S	ENST00000222270	NM_014727.1	418	Cca/Tca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212352	36212353	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2571	296	589	1	ENST00000222270.7:c.2103_2104delinsTT	p.Leu702Phe	p.L702F	ENST00000222270	NM_014727.1	701	caCCtc/caTTtc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794581	42794581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2468	304	648	0	ENST00000575354.2:c.1661C>T	p.Ser554Leu	p.S554L	ENST00000575354	NM_015125.3	554	tCa/tTa																																																																														
CIC	23152	MSKCC	GRCh37	19	42795067	42795067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2648	324	698	0	ENST00000575354.2:c.2147G>A	p.Arg716Gln	p.R716Q	ENST00000575354	NM_015125.3	716	cGg/cAg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966708	25966708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2789	268	452	0	ENST00000435504.4:c.2498C>T	p.Pro833Leu	p.P833L	ENST00000435504		833	cCt/cTt																																																																														
ALK	238	MSKCC	GRCh37	2	29462654	29462654	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3143	343	695	0	ENST00000389048.3:c.2247C>G	p.Asn749Lys	p.N749K	ENST00000389048	NM_004304.4	749	aaC/aaG																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213203	39213203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3357	345	677	0	ENST00000402219.2:c.3764C>T	p.Pro1255Leu	p.P1255L	ENST00000402219	NM_005633.3	1255	cCc/cTc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46588087	46588088	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2857	268	505	1	ENST00000263734.3:c.637_638delinsAA	p.Gly213Asn	p.G213N	ENST00000263734	NM_001430.4	213	GGc/AAc																																																																														
PAK7	0	MSKCC	GRCh37	20	9523256	9523256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2279	288	447	1	ENST00000353224.5:c.1981C>A	p.Pro661Thr	p.P661T	ENST00000353224	NM_177990.2	661	Cca/Aca																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644718	134644718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2561	297	302	0	ENST00000398015.3:c.119C>T	p.Ser40Phe	p.S40F	ENST00000398015	NM_004441.4	40	tCc/tTc																																																																														
ATR	545	MSKCC	GRCh37	3	142259762	142259762	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1805	180	258	0	ENST00000350721.4:c.3565C>G	p.Pro1189Ala	p.P1189A	ENST00000350721	NM_001184.3	1189	Cct/Gct																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170002366	170002367	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	113	147	0	ENST00000295797.4:c.1185_1186delinsCT	p.Asp396Tyr	p.D396Y	ENST00000295797	NM_002740.5	395	acTGac/acCTac																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170011263	170011263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2619	244	376	0	ENST00000295797.4:c.1384C>T	p.Pro462Ser	p.P462S	ENST00000295797	NM_002740.5	462	Cct/Tct																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502871	186502872	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2252	165	322	0	ENST00000323963.5:c.329_330delinsTT	p.Thr110Ile	p.T110I	ENST00000323963		110	aCC/aTT																																																																														
WHSC1	0	MSKCC	GRCh37	4	1976617	1976618	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2483	305	494	0	ENST00000382891.5:c.3400_3401delinsAA	p.Gly1134Lys	p.G1134K	ENST00000382891	NM_133335.3	1134	GGa/AAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542059	187542059	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1852	209	282	0	ENST00000441802.2:c.5681A>G	p.Lys1894Arg	p.K1894R	ENST00000441802	NM_005245.3	1894	aAa/aGa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554979	187554979	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1274	164	189	0	ENST00000441802.2:c.4184-2A>G		p.X1395_splice	ENST00000441802	NM_005245.3	1395																																																																															
TERT	7015	MSKCC	GRCh37	5	1278792	1278793	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2492	293	520	2	ENST00000310581.5:c.2249_2250delinsTT	p.Ala750Val	p.A750V	ENST00000310581	NM_198253.2	750	gCC/gTT																																																																														
TERT	7015	MSKCC	GRCh37	5	1294150	1294150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2391	323	579	0	ENST00000310581.5:c.851C>A	p.Ser284Tyr	p.S284Y	ENST00000310581	NM_198253.2	284	tCt/tAt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520672	176520672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2361	318	638	0	ENST00000292408.4:c.1415C>T	p.Pro472Leu	p.P472L	ENST00000292408	NM_213647.1	472	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706927	117706927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2245	285	354	1	ENST00000368508.3:c.2223C>A	p.His741Gln	p.H741Q	ENST00000368508	NM_002944.2	741	caC/caA																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519482	137519482	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1669	214	230	0	ENST00000367739.4:c.1156C>T	p.Gln386Ter	p.Q386*	ENST00000367739	NM_000416.2	386	Cag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983890	2983890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2667	301	571	0	ENST00000396946.4:c.640G>A	p.Glu214Lys	p.E214K	ENST00000396946	NM_032415.4	214	Gag/Aag																																																																														
SMO	6608	MSKCC	GRCh37	7	128846095	128846095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2705	344	572	0	ENST00000249373.3:c.1025C>T	p.Ser342Phe	p.S342F	ENST00000249373	NM_005631.4	342	tCc/tTc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523549	148523550	+	missense_variant	Missense_Mutation	DNP	AA	AA	TT			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	118	114	0	ENST00000320356.2:c.903_904inv	p.Asn301_Tyr302delinsLysAsn	p.N301_Y302delinsKN	ENST00000320356	NM_004456.4	301	aaTTat/aaAAat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873656	151873656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2216	254	355	0	ENST00000262189.6:c.8882C>T	p.Pro2961Leu	p.P2961L	ENST00000262189	NM_170606.2	2961	cCt/cTt																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878905	117878905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2169	195	284	0	ENST00000297338.2:c.64C>T	p.His22Tyr	p.H22Y	ENST00000297338	NM_006265.2	22	Cat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0045401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	9	381	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0045402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	164	488	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592163	67592164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTAG			P-0045402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	22	151	0	ENST00000274335.5:c.1984_1985+3dup		p.S660fs	ENST00000274335		660	tct/tcTGTAGt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119966	70120018	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	-			P-0045402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	13	323	0	ENST00000245479.2:c.970_1022del	p.Thr324AlafsTer236	p.T324Afs*236	ENST00000245479	NM_000346.3	323	aGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG/a																																																																														
PGR	5241	MSKCC	GRCh37	11	100962554	100962554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	67	489	0	ENST00000325455.5:c.1843C>A	p.Arg615Ser	p.R615S	ENST00000325455	NM_001202474.3	615	Cgc/Agc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912331	32912331	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	36	338	0	ENST00000380152.3:c.3839A>C	p.Asp1280Ala	p.D1280A	ENST00000380152		1280	gAt/gCt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644707	67644748	+	splice_acceptor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	TGTGTTCTCCCTTAATAAAGGCAGGGGAAATGGAAGGTGATG	TGTGTTCTCCCTTAATAAAGGCAGGGGAAATGGAAGGTGATG	-			P-0045402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	36	307	0	ENST00000264010.4:c.-9-20_13del		p.X3_splice	ENST00000264010	NM_006565.3	3																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692956	89692956	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CG			P-0045402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	79	478	0	ENST00000371953.3:c.440delinsCG	p.Lys147ThrfsTer33	p.K147Tfs*33	ENST00000371953	NM_000314.4	147	aAg/aCGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	115	379	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577547	7577548	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0045405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	68	650	1	ENST00000269305.4:c.733_734delinsTT	p.Gly245Phe	p.G245F	ENST00000269305	NM_001126112.2	245	GGc/TTc																																																																														
ATR	545	MSKCC	GRCh37	3	142278106	142278106	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	56	431	0	ENST00000350721.4:c.1719G>C	p.Leu573Phe	p.L573F	ENST00000350721	NM_001184.3	573	ttG/ttC																																																																														
ATM	472	MSKCC	GRCh37	11	108206593	108206593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	165	290	0	ENST00000278616.4:c.8173G>A	p.Asp2725Asn	p.D2725N	ENST00000278616	NM_000051.3	2725	Gat/Aat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435298	18435298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	51	331	0	ENST00000266497.5:c.283G>C	p.Glu95Gln	p.E95Q	ENST00000266497		95	Gaa/Caa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435382	18435382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	47	316	0	ENST00000266497.5:c.367G>C	p.Glu123Gln	p.E123Q	ENST00000266497		123	Gaa/Caa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265452	198265452	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	65	456	0	ENST00000335508.6:c.2705A>C	p.Glu902Ala	p.E902A	ENST00000335508	NM_012433.2	902	gAa/gCa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67569222	67569222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	113	398	1	ENST00000274335.5:c.339G>C	p.Leu113Phe	p.L113F	ENST00000274335		113	ttG/ttC																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528414	157528414	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	223	702	0	ENST00000346085.5:c.6140del	p.Pro2047GlnfsTer52	p.P2047Qfs*52	ENST00000346085	NM_020732.3	2047	Cca/ca																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876392	35876392	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	22	519	2	ENST00000303115.3:c.1184A>C	p.Lys395Thr	p.K395T	ENST00000303115	NM_002185.3	395	aAg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0045411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	75	804	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391007	89391007	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	10	362	0	ENST00000336596.2:c.1074del	p.Phe359SerfsTer12	p.F359Sfs*12	ENST00000336596	NM_005233.5	358	aCc/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	289	468	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
MST1R	4486	MSKCC	GRCh37	3	49924771	49924771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	269	681	1	ENST00000296474.3:c.4172G>A	p.Arg1391Gln	p.R1391Q	ENST00000296474	NM_002447.2	1391	cGg/cAg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198270100	198270100	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	101	284	0	ENST00000335508.6:c.1336A>T	p.Met446Leu	p.M446L	ENST00000335508	NM_012433.2	446	Atg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	393	608	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
RB1	5925	MSKCC	GRCh37	13	49027133	49027133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	62	211	0	ENST00000267163.4:c.1700C>T	p.Ser567Leu	p.S567L	ENST00000267163	NM_000321.2	567	tCa/tTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528611	8528611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201846121		P-0045414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	194	317	0	ENST00000356435.5:c.521G>A	p.Arg174His	p.R174H	ENST00000356435		174	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448391	49448391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	243	608	1	ENST00000301067.7:c.320A>G	p.Glu107Gly	p.E107G	ENST00000301067	NM_003482.3	107	gAg/gGg																																																																														
CASP8	841	MSKCC	GRCh37	2	202136277	202136277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	263	392	0	ENST00000358485.4:c.521C>T	p.Ser174Leu	p.S174L	ENST00000358485	NM_001080125.1	174	tCa/tTa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259152	36259156	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCA	GGGCA	-			P-0045414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	144	618	0	ENST00000300305.3:c.335_339del	p.Leu112HisfsTer24	p.L112Hfs*24	ENST00000300305		112	cTGCCC/c																																																																														
EP300	2033	MSKCC	GRCh37	22	41565544	41565544	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	456	315	0	ENST00000263253.7:c.4211del	p.Phe1404SerfsTer6	p.F1404Sfs*6	ENST00000263253	NM_001429.3	1404	Ttc/tc																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665299	138665299	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	616	713	1	ENST00000330315.3:c.266C>G	p.Pro89Arg	p.P89R	ENST00000330315	NM_023067.3	89	cCg/cGg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918557	44918557	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	266	233	0	ENST00000377967.4:c.1040T>A	p.Leu347Ter	p.L347*	ENST00000377967	NM_021140.2	347	tTg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	272	789	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	105	395	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																														
AR	367	MSKCC	GRCh37	X	66765159	66765185	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	10	170	0	ENST00000374690.3:c.213_239del	p.Gln72_Gln80del	p.Q72_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																														
EP300	2033	MSKCC	GRCh37	22	41565538	41565538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	106	333	0	ENST00000263253.7:c.4204C>G	p.His1402Asp	p.H1402D	ENST00000263253	NM_001429.3	1402	Cat/Gat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922884	44922884	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	136	281	0	ENST00000377967.4:c.1745C>G	p.Ser582Ter	p.S582*	ENST00000377967	NM_021140.2	582	tCa/tGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152009002	152009002	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138740890		P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	24	284	0	ENST00000262189.6:c.620C>G	p.Ser207Cys	p.S207C	ENST00000262189	NM_170606.2	207	tCt/tGt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895698	28895699	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AA			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	30	430	1	ENST00000282397.4:c.3075_3076delinsTT	p.Arg1026Ter	p.R1026*	ENST00000282397	NM_002019.4	1025	gcGAga/gcTTga																																																																														
AKT1	207	MSKCC	GRCh37	14	105238701	105238701	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	120	704	0	ENST00000349310.3:c.1260+1G>T		p.X420_splice	ENST00000349310	NM_001014432.1	420																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632645	3632645	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	255	844	0	ENST00000294008.3:c.5203G>C	p.Glu1735Gln	p.E1735Q	ENST00000294008	NM_032444.2	1735	Gag/Cag																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12013702	12013702	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	115	269	1	ENST00000353533.5:c.644C>A	p.Ala215Glu	p.A215E	ENST00000353533	NM_003010.3	215	gCa/gAa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600000	10600000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	165	813	0	ENST00000171111.5:c.1576G>A	p.Asp526Asn	p.D526N	ENST00000171111	NM_203500.1	526	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714421	40714421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	62	454	0	ENST00000373198.4:c.3976G>A	p.Asp1326Asn	p.D1326N	ENST00000373198	NM_133170.3	1326	Gac/Aac																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155352	185155352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	120	353	0	ENST00000265026.3:c.593G>C	p.Arg198Thr	p.R198T	ENST00000265026	NM_004721.4	198	aGa/aCa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160759	56160759	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	74	270	0	ENST00000399503.3:c.1033C>G	p.Gln345Glu	p.Q345E	ENST00000399503	NM_005921.1	345	Cag/Gag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449739	8449739	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	161	525	0	ENST00000356435.5:c.3974A>C	p.Asn1325Thr	p.N1325T	ENST00000356435		1325	aAc/aCc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966669	44966669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	93	164	0	ENST00000377967.4:c.3893G>A	p.Arg1298Lys	p.R1298K	ENST00000377967	NM_021140.2	1298	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	190	643	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	223	625	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210692	5210692	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	173	644	0	ENST00000357368.4:c.5359C>T	p.Arg1787Trp	p.R1787W	ENST00000357368	NM_002850.3	1787	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244392	5244392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	55	735	0	ENST00000357368.4:c.1090G>A	p.Val364Ile	p.V364I	ENST00000357368	NM_002850.3	364	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112173590	112173590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	75	242	0	ENST00000257430.4:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000257430	NM_000038.5	767	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	109	279	0	ENST00000304494.5:c.242C>A	p.Pro81His	p.P81H	ENST00000304494	NM_000077.4	81	cCc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	109	279	0	ENST00000304494.5:c.242C>A	p.Pro81His	p.P81H	ENST00000304494	NM_000077.4	81	cCc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3824585	3824585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	115	394	0	ENST00000262367.5:c.2268G>A	p.Met756Ile	p.M756I	ENST00000262367	NM_004380.2	756	atG/atA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0045418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	380	286	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578498	7578499	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0045418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	1744	755	0	ENST00000269305.4:c.430_431dup	p.Gln144HisfsTer27	p.Q144Hfs*27	ENST00000269305	NM_001126112.2	144	cag/caCAg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99203953	99203953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	86	214	0	ENST00000074304.5:c.2816G>A	p.Arg939Lys	p.R939K	ENST00000074304	NM_001134224.1	939	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	70	734	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	69	506	0	ENST00000304494.5:c.341C>A	p.Pro114His	p.P114H	ENST00000304494	NM_000077.4	114	cCc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	69	506	0	ENST00000304494.5:c.341C>A	p.Pro114His	p.P114H	ENST00000304494	NM_000077.4	114	cCc/cAc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894876	101894876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	28	276	1	ENST00000374994.4:c.429G>T	p.Leu143Phe	p.L143F	ENST00000374994	NM_004612.2	143	ttG/ttT																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894934	101894934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	28	259	0	ENST00000374994.4:c.487G>A	p.Asp163Asn	p.D163N	ENST00000374994	NM_004612.2	163	Gac/Aac																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894946	101894946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	29	247	0	ENST00000374994.4:c.499G>T	p.Asp167Tyr	p.D167Y	ENST00000374994	NM_004612.2	167	Gat/Tat																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894964	101894964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	26	233	0	ENST00000374994.4:c.517G>C	p.Glu173Gln	p.E173Q	ENST00000374994	NM_004612.2	173	Gag/Cag																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894982	101894982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	24	203	0	ENST00000374994.4:c.535G>A	p.Asp179Asn	p.D179N	ENST00000374994	NM_004612.2	179	Gac/Aac																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894994	101894994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	20	191	0	ENST00000374994.4:c.547G>A	p.Asp183Asn	p.D183N	ENST00000374994	NM_004612.2	183	Gat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	195	501	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448599	89448599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	67	468	0	ENST00000336596.2:c.1563C>A	p.Ser521Arg	p.S521R	ENST00000336596	NM_005233.5	521	agC/agA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	286	660	0	ENST00000269305.4:c.810T>G	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttG																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360602	118360602	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0045468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	39	309	0	ENST00000534358.1:c.4575G>C	p.Trp1525Cys	p.W1525C	ENST00000534358	NM_005933.3	1525	tgG/tgC																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804207	46804207	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	268	719	0	ENST00000290295.7:c.800del	p.Arg267ProfsTer12	p.R267Pfs*12	ENST00000290295	NM_006361.5	267	cGc/cc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349924	70349924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	198	418	0	ENST00000374080.3:c.3907G>A	p.Asp1303Asn	p.D1303N	ENST00000374080		1303	Gac/Aac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163794	47163794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	147	272	0	ENST00000409792.3:c.2332C>T	p.Pro778Ser	p.P778S	ENST00000409792	NM_014159.6	778	Cca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577064	7577070	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTGCG	TCTTGCG	-			P-0045469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	413	687	1	ENST00000269305.4:c.868_874del	p.Arg290LysfsTer53	p.R290Kfs*53	ENST00000269305	NM_001126112.2	290	CGCAAGAaa/aa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	121	363	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	239	552	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	163	406	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	62	228	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	83	267	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	82	309	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856014	45856014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	277	657	2	ENST00000391945.4:c.1892G>A	p.Arg631His	p.R631H	ENST00000391945	NM_000400.3	631	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638456	176638456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	191	535	1	ENST00000439151.2:c.3056G>A	p.Arg1019His	p.R1019H	ENST00000439151	NM_022455.4	1019	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	16	467	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
APC	324	MSKCC	GRCh37	5	112176008	112176008	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	56	183	0	ENST00000257430.4:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000257430	NM_000038.5	1573	Gaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	138	495	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
CDH1	999	MSKCC	GRCh37	16	68845693	68845694	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	173	443	0	ENST00000261769.5:c.944dup	p.Asn315LysfsTer6	p.N315Kfs*6	ENST00000261769	NM_004360.3	313	-/A																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035204	6035207	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	81	298	0	ENST00000265849.7:c.861_864delACAG	p.Arg287SerfsTer19	p.R287Sfs*19	ENST00000265849	NM_000535.5	287	agACAG/ag																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196093	138196093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	111	217	0	ENST00000237289.4:c.407G>A	p.Arg136His	p.R136H	ENST00000237289	NM_001270507.1	136	cGc/cAc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635161	87635161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	125	356	0	ENST00000277120.3:c.2213C>T	p.Pro738Leu	p.P738L	ENST00000277120		738	cCa/cTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845958	151845959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	129	423	0	ENST00000262189.6:c.13053dupA	p.Trp4352MetfsTer17	p.W4352Mfs*17	ENST00000262189	NM_170606.2	4351	-/A																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40368072	40368072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	234	507	1	ENST00000293328.3:c.1433C>T	p.Ala478Val	p.A478V	ENST00000293328	NM_012448.3	478	gCg/gTg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018167	48018167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	187	474	0	ENST00000234420.5:c.362G>A	p.Arg121His	p.R121H	ENST00000234420	NM_000179.2	121	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685280	89685280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	22	132	2	ENST00000371953.3:c.175T>C	p.Ser59Pro	p.S59P	ENST00000371953	NM_000314.4	59	Tca/Cca																																																																														
CIC	23152	MSKCC	GRCh37	19	42797375	42797376	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	290	919	0	ENST00000575354.2:c.3743dup	p.Leu1249ThrfsTer6	p.L1249Tfs*6	ENST00000575354	NM_015125.3	1246	agc/agCc																																																																														
STK40	83931	MSKCC	GRCh37	1	36809530	36809530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	291	791	0	ENST00000373129.3:c.935T>C	p.Val312Ala	p.V312A	ENST00000373129	NM_032017.1	312	gTc/gCc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939827	71939828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	296	878	0	ENST00000298229.2:c.459dup	p.Thr154HisfsTer11	p.T154Hfs*11	ENST00000298229	NM_001567.3	152	gcc/gCcc																																																																														
ATM	472	MSKCC	GRCh37	11	108201106	108201106	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	61	269	0	ENST00000278616.4:c.7473G>A	p.Trp2491Ter	p.W2491*	ENST00000278616	NM_000051.3	2491	tgG/tgA																																																																														
POLE	5426	MSKCC	GRCh37	12	133218374	133218374	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	132	627	0	ENST00000320574.5:c.5237A>G	p.Asn1746Ser	p.N1746S	ENST00000320574	NM_006231.2	1746	aAc/aGc																																																																														
POLE	5426	MSKCC	GRCh37	12	133219564	133219564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	236	595	0	ENST00000320574.5:c.4570C>T	p.Pro1524Ser	p.P1524S	ENST00000320574	NM_006231.2	1524	Ccc/Tcc																																																																														
B2M	567	MSKCC	GRCh37	15	45007666	45007667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	82	193	0	ENST00000558401.1:c.116dup	p.Ser40ValfsTer17	p.S40Vfs*17	ENST00000558401	NM_004048.2	38	gga/ggAa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223320	2223320	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	263	711	0	ENST00000326181.6:c.932A>C	p.Glu311Ala	p.E311A	ENST00000326181	NM_032271.2	311	gAg/gCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831426	72831426	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	67	432	0	ENST00000268489.5:c.5155A>T	p.Ile1719Phe	p.I1719F	ENST00000268489	NM_006885.3	1719	Att/Ttt																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627357	14627357	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	197	564	1	ENST00000254322.2:c.713T>A	p.Val238Asp	p.V238D	ENST00000254322	NM_006145.1	238	gTt/gAt																																																																														
ERF	2077	MSKCC	GRCh37	19	42754011	42754011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	212	587	0	ENST00000222329.4:c.341T>C	p.Val114Ala	p.V114A	ENST00000222329	NM_006494.2	114	gTc/gCc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99136596	99136596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	209	593	0	ENST00000074304.5:c.85A>G	p.Met29Val	p.M29V	ENST00000074304	NM_001134224.1	29	Atg/Gtg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522414	176522414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	260	803	0	ENST00000292408.4:c.1603A>G	p.Asn535Asp	p.N535D	ENST00000292408	NM_213647.1	535	Aac/Gac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139410136	139410136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	247	830	1	ENST00000277541.6:c.1702G>A	p.Asp568Asn	p.D568N	ENST00000277541	NM_017617.3	568	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	523	535	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
RB1	5925	MSKCC	GRCh37	13	48954345	48954345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	78	220	0	ENST00000267163.4:c.1466G>A	p.Cys489Tyr	p.C489Y	ENST00000267163	NM_000321.2	489	tGc/tAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29556864	29556886	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TGATACCAATACTCAATTTGTAG	TGATACCAATACTCAATTTGTAG	CTA			P-0045473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	14	216	0	ENST00000358273.4:c.2862_2884delinsCTA	p.Asp955Ter	p.D955*	ENST00000358273	NM_001042492.2	954	acTGATACCAATACTCAATTTGTAGaa/acCTAaa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746017	162746017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	44	354	0	ENST00000367921.3:c.2140C>T	p.Arg714Ter	p.R714*	ENST00000367921	NM_006182.2	714	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913529		P-0017278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	707	370	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231281	46231281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0017536-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	14	180	0	ENST00000334344.6:c.1121G>T	p.Gly374Val	p.G374V	ENST00000334344	NM_152641.2	374	gGc/gTc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0017937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	58	793	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	78	730	1	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606042	81606042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	52	588	0	ENST00000298171.2:c.712G>C	p.Val238Leu	p.V238L	ENST00000298171	NM_000369.2	238	Gtc/Ctc																																																																														
NF1	4763	MSKCC	GRCh37	17	29592345	29592345	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	51	603	0	ENST00000358273.4:c.4823A>T	p.Tyr1608Phe	p.Y1608F	ENST00000358273	NM_001042492.2	1608	tAt/tTt																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140151	50140151	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148755459		P-0017937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	66	659	0	ENST00000246792.3:c.274G>A	p.Ala92Thr	p.A92T	ENST00000246792	NM_006270.3	92	Gcc/Acc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980565	1980565	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs142054662		P-0017937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	66	696	0	ENST00000382891.5:c.4027C>G	p.Pro1343Ala	p.P1343A	ENST00000382891	NM_133335.3	1343	Cca/Gca																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935522	13935522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	15	314	1	ENST00000405192.2:c.1334C>A	p.Pro445His	p.P445H	ENST00000405192	NM_001163147.1	445	cCc/cAc																																																																														
HGF	3082	MSKCC	GRCh37	7	81334773	81334773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	18	680	0	ENST00000222390.5:c.1943G>A	p.Gly648Glu	p.G648E	ENST00000222390	NM_000601.4	648	gGg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	405	801	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281129	49281129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	18	937	0	ENST00000282018.3:c.176C>G	p.Ser59Cys	p.S59C	ENST00000282018	NM_020377.2	59	tCc/tGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151946981	151946981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	76	575	0	ENST00000262189.6:c.1793C>G	p.Thr598Arg	p.T598R	ENST00000262189	NM_170606.2	598	aCa/aGa																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64289965	64289965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022051-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	102	259	0	ENST00000370651.3:c.408G>C	p.Lys136Asn	p.K136N	ENST00000370651	NM_003463.4	136	aaG/aaC																																																																														
RAC1	5879	MSKCC	GRCh37	7	6442018	6442018	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022051-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	71	126	0	ENST00000356142.4:c.577C>T	p.Arg193Ter	p.R193*	ENST00000356142	NM_018890.3	193	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412427	63412428	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0022903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	81	807	0	ENST00000330258.3:c.739_740delinsAG	p.Pro247Arg	p.P247R	ENST00000330258	NM_152424.3	247	CCa/AGa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225603	2225603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	267	628	1	ENST00000326181.6:c.1606G>A	p.Gly536Ser	p.G536S	ENST00000326181	NM_032271.2	536	Ggc/Agc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257565	19257565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	114	669	1	ENST00000162023.5:c.661G>A	p.Gly221Arg	p.G221R	ENST00000162023		221	Gga/Aga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534392	63534392	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1439	152	728	0	ENST00000307078.5:c.1129A>T	p.Arg377Trp	p.R377W	ENST00000307078	NM_004655.3	377	Agg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296133	15296133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2139	129	762	0	ENST00000263388.2:c.2231G>T	p.Arg744Met	p.R744M	ENST00000263388	NM_000435.2	744	aGg/aTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189455542	189455542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	52	521	1	ENST00000264731.3:c.76C>T	p.Pro26Ser	p.P26S	ENST00000264731	NM_003722.4	26	Cca/Tca																																																																														
MSH3	4437	MSKCC	GRCh37	5	79968560	79968560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	116	435	3	ENST00000265081.6:c.910G>T	p.Val304Leu	p.V304L	ENST00000265081	NM_002439.4	304	Gtg/Ttg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55220314	55220314	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	41	687	0	ENST00000275493.2:c.704A>T	p.Gln235Leu	p.Q235L	ENST00000275493	NM_005228.3	235	cAg/cTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391479	139391479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	70	640	1	ENST00000277541.6:c.6712C>T	p.Pro2238Ser	p.P2238S	ENST00000277541	NM_017617.3	2238	Ccc/Tcc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391679	139391679	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	88	729	0	ENST00000277541.6:c.6512A>T	p.Lys2171Met	p.K2171M	ENST00000277541	NM_017617.3	2171	aAg/aTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70351935	70351935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	92	306	0	ENST00000374080.3:c.4132C>T	p.Leu1378Phe	p.L1378F	ENST00000374080		1378	Ctc/Ttc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	44	992	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29509579	29509579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	28	630	0	ENST00000358273.4:c.784C>T	p.Arg262Cys	p.R262C	ENST00000358273	NM_001042492.2	262	Cgt/Tgt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729445	41729445	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	23	651	1	ENST00000242208.4:c.1084T>C	p.Ser362Pro	p.S362P	ENST00000242208	NM_002192.2	362	Tcc/Ccc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662351	67662351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	197	246	0	ENST00000264010.4:c.1597C>T	p.Arg533Cys	p.R533C	ENST00000264010	NM_006565.3	533	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	117	833	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	50	584	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	56	423	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	48	558	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	48	558	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	48	558	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	1374	879	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	82	806	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2106696	2106696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	107	1077	0	ENST00000219476.3:c.700G>A	p.Glu234Lys	p.E234K	ENST00000219476	NM_000548.3	234	Gag/Aag																																																																														
TOP1	7150	MSKCC	GRCh37	20	39742733	39742733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	85	684	0	ENST00000361337.2:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000361337	NM_003286.2	526	Gag/Cag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591035	67591035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	47	341	0	ENST00000274335.5:c.1628G>A	p.Arg543Lys	p.R543K	ENST00000274335		543	aGa/aAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	68	574	0	ENST00000288602.6:c.1391G>C	p.Gly464Ala	p.G464A	ENST00000288602	NM_004333.4	464	gGa/gCa																																																																														
EED	8726	MSKCC	GRCh37	11	85977198	85977198	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	51	528	0	ENST00000263360.6:c.800C>G	p.Ser267Ter	p.S267*	ENST00000263360	NM_003797.3	267	tCa/tGa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44910953	44910953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	11	204	0	ENST00000377967.4:c.655-1G>C		p.X219_splice	ENST00000377967	NM_021140.2	219																																																																															
JAK1	3716	MSKCC	GRCh37	1	65335148	65335148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	58	641	0	ENST00000342505.4:c.493G>A	p.Asp165Asn	p.D165N	ENST00000342505	NM_002227.2	165	Gat/Aat																																																																														
RET	5979	MSKCC	GRCh37	10	43600594	43600594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	40	822	3	ENST00000355710.3:c.820G>A	p.Ala274Thr	p.A274T	ENST00000355710	NM_020975.4	274	Gcg/Acg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426373	49426373	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	112	1115	0	ENST00000301067.7:c.12115G>C	p.Glu4039Gln	p.E4039Q	ENST00000301067	NM_003482.3	4039	Gag/Cag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716298	52716298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	131	875	0	ENST00000322088.6:c.742C>G	p.Leu248Val	p.L248V	ENST00000322088	NM_014225.5	248	Ctg/Gtg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098775	178098775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	40	755	0	ENST00000397062.3:c.270G>C	p.Gln90His	p.Q90H	ENST00000397062	NM_006164.4	90	caG/caC																																																																														
TOP1	7150	MSKCC	GRCh37	20	39742637	39742637	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	47	491	0	ENST00000361337.2:c.1480G>C	p.Glu494Gln	p.E494Q	ENST00000361337	NM_003286.2	494	Gag/Cag																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430248	181430248	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	44	591	0	ENST00000325404.1:c.100C>G	p.Gln34Glu	p.Q34E	ENST00000325404	NM_003106.3	34	Cag/Gag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659239	86659239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	35	396	0	ENST00000274376.6:c.1528G>A	p.Glu510Lys	p.E510K	ENST00000274376	NM_002890.2	510	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683989	117683989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	87	545	0	ENST00000368508.3:c.3158C>G	p.Pro1053Arg	p.P1053R	ENST00000368508	NM_002944.2	1053	cCa/cGa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031732	69031732	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	82	730	0	ENST00000288368.4:c.3487G>C	p.Glu1163Gln	p.E1163Q	ENST00000288368	NM_024870.2	1163	Gag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0045304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	15	545	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	334	661	2	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905512	50905512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	195	648	1	ENST00000440232.2:c.640G>A	p.Val214Met	p.V214M	ENST00000440232	NM_002691.3	214	Gtg/Atg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061317	38061317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	318	566	1	ENST00000250448.2:c.672C>A	p.Phe224Leu	p.F224L	ENST00000250448	NM_004496.3	224	ttC/ttA																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444375	50444375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	73	293	0	ENST00000331340.3:c.305C>T	p.Ser102Leu	p.S102L	ENST00000331340	NM_006060.4	102	tCg/tTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70406003	70406003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	84	469	2	ENST00000373644.4:c.3517C>T	p.Arg1173Trp	p.R1173W	ENST00000373644	NM_030625.2	1173	Cgg/Tgg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5064902	5064902	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0045408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	44	224	0	ENST00000381652.3:c.1076T>G	p.Leu359Ter	p.L359*	ENST00000381652	NM_004972.3	359	tTa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	717	1121	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37646949	37646949	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	339	827	1	ENST00000447079.4:c.2071A>G	p.Ile691Val	p.I691V	ENST00000447079	NM_015083.1	691	Atc/Gtc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326258	62326258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	400	1195	0	ENST00000508582.2:c.3346C>T	p.Leu1116Phe	p.L1116F	ENST00000508582		1116	Ctc/Ttc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920102	1920102	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	58	1071	0	ENST00000382895.3:c.1162A>T	p.Lys388Ter	p.K388*	ENST00000382895	NM_133330.2	388	Aag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	163	609	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	232	316	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	460	679	1	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115251182	115251182	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	90	372	0	ENST00000369535.4:c.544A>T	p.Met182Leu	p.M182L	ENST00000369535	NM_002524.4	182	Atg/Ttg																																																																														
TET1	80312	MSKCC	GRCh37	10	70426860	70426860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	84	301	0	ENST00000373644.4:c.4520G>T	p.Gly1507Val	p.G1507V	ENST00000373644	NM_030625.2	1507	gGc/gTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375310	15375310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	222	607	0	ENST00000263377.2:c.1117G>A	p.Ala373Thr	p.A373T	ENST00000263377	NM_058243.2	373	Gcc/Acc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680043	30680043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			728	173	512	0	ENST00000376406.3:c.1676C>T	p.Pro559Leu	p.P559L	ENST00000376406	NM_014641.2	559	cCa/cTa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904851	101904851	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045260-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	89	260	0	ENST00000374994.4:c.839C>G	p.Ser280Ter	p.S280*	ENST00000374994	NM_004612.2	280	tCa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	38	518	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	27	566	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0045379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	40	711	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	45	1206	0	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																														
MPL	4352	MSKCC	GRCh37	1	43814571	43814571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	42	973	0	ENST00000372470.3:c.1366C>T	p.Arg456Cys	p.R456C	ENST00000372470	NM_005373.2	456	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	59	359	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	83	571	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	252	863	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874036	151874036	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs138845109		P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	104	469	0	ENST00000262189.6:c.8502A>T	p.Glu2834Asp	p.E2834D	ENST00000262189	NM_170606.2	2834	gaA/gaT																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121541	2121541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	252	1008	0	ENST00000219476.3:c.1870G>A	p.Asp624Asn	p.D624N	ENST00000219476	NM_000548.3	624	Gac/Aac																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66520194	66520194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	92	380	0	ENST00000358598.2:c.478G>T	p.Ala160Ser	p.A160S	ENST00000358598	NM_212471.2	160	Gca/Tca																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031939	26031939	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	44	452	0	ENST00000244661.2:c.350G>C	p.Arg117Pro	p.R117P	ENST00000244661	NM_003537.3	117	cGa/cCa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	97	232	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	208	378	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	328	520	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	91	207	0	ENST00000257430.4:c.3904delC	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846216	156846216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	154	883	1	ENST00000524377.1:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000524377	NM_002529.3	553	Gct/Act																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114905819	114905820	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	194	586	0	ENST00000543371.1:c.839dup	p.Tyr280Ter	p.Y280*	ENST00000543371	NM_001198531.1	280	tac/tAac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579560	7579563	+	frameshift_variant	Frame_Shift_Del	DEL	AATC	AATC	-			P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	249	826	0	ENST00000269305.4:c.124_127del	p.Asp42Ter	p.D42*	ENST00000269305	NM_001126112.2	42	GATTtg/tg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957020	1957020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	69	711	0	ENST00000382891.5:c.2471G>A	p.Arg824Gln	p.R824Q	ENST00000382891	NM_133335.3	824	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	69	623	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	25	320	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0045437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	53	856	1	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845569	63845569	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	22	191	0	ENST00000279873.7:c.1311del	p.Val438TyrfsTer41	p.V438Yfs*41	ENST00000279873	NM_032199.2	436	acA/ac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	979	351	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0045449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	1279	716	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48955535	48955535	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	61	259	0	ENST00000267163.4:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000267163	NM_000321.2	551	Gaa/Taa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	140	366	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857875	9857875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	327	574	0	ENST00000330684.3:c.3526G>A	p.Glu1176Lys	p.E1176K	ENST00000330684	NM_001134407.1	1176	Gag/Aag																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206650147	206650147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	377	695	1	ENST00000367120.3:c.667C>T	p.Pro223Ser	p.P223S	ENST00000367120	NM_014002.3	223	Ccc/Tcc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720950	176720950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	314	515	0	ENST00000439151.2:c.6581C>T	p.Ser2194Phe	p.S2194F	ENST00000439151	NM_022455.4	2194	tCc/tTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522561	106522561	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	170	287	0	ENST00000359195.3:c.2539-1G>A		p.X847_splice	ENST00000359195	NM_002649.2	847																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	21	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	99	995	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0045451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	17	270	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0045451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	17	270	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602328	10602328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	323	821	1	ENST00000171111.5:c.1250G>T	p.Gly417Val	p.G417V	ENST00000171111	NM_203500.1	417	gGg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0045256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	50	638	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0045256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	212	635	0	ENST00000326873.7:c.598-2A>C		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2202722	2202722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	293	623	0	ENST00000398665.3:c.731C>T	p.Ala244Val	p.A244V	ENST00000398665	NM_032482.2	244	gCc/gTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678369	88678370	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0045256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			792	246	772	0	ENST00000360948.2:c.1166_1167delinsT	p.Gln389LeufsTer25	p.Q389Lfs*25	ENST00000360948	NM_001012338.2	389	cAG/cT																																																																														
RB1	5925	MSKCC	GRCh37	13	49030412	49030412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045256-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	218	410	0	ENST00000267163.4:c.1887G>T	p.Glu629Asp	p.E629D	ENST00000267163	NM_000321.2	629	gaG/gaT																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536677	120536677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	150	769	2	ENST00000229340.5:c.415G>A	p.Ala139Thr	p.A139T	ENST00000229340	NM_006861.6	139	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579380	7579380	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	173	738	0	ENST00000269305.4:c.307delT	p.Tyr103ThrfsTer20	p.Y103Tfs*20	ENST00000269305	NM_001126112.2	103	Tac/ac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922695	44922695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	98	429	0	ENST00000377967.4:c.1556delG	p.Arg519HisfsTer29	p.R519Hfs*29	ENST00000377967	NM_021140.2	519	cGa/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	328	810	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752903	57752903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	241	477	0	ENST00000274289.3:c.1025G>A	p.Arg342Lys	p.R342K	ENST00000274289	NM_006622.3	342	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576906	7576906	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	94	822	0	ENST00000269305.4:c.940del	p.Ser314ProfsTer31	p.S314Pfs*31	ENST00000269305	NM_001126112.2	314	Tcc/cc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591121	67591123	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0045287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	158	359	0	ENST00000274335.5:c.1715_1717del	p.Gln572del	p.Q572del	ENST00000274335		572	CAG/-																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0045288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	40	267	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	364577	364577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	108	866	0	ENST00000262320.3:c.985G>A	p.Asp329Asn	p.D329N	ENST00000262320	NM_003502.3	329	Gat/Aat																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912049	127912049	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	24	403	0	ENST00000373547.4:c.821T>C	p.Phe274Ser	p.F274S	ENST00000373547	NM_002721.4	274	tTc/tCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578445	7578446	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	C			P-0045288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	244	811	0	ENST00000269305.4:c.484_485delinsG	p.Ile162AlafsTer8	p.I162Afs*8	ENST00000269305	NM_001126112.2	162	ATc/Gc																																																																														
WT1	7490	MSKCC	GRCh37	11	32456365	32456365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	238	646	1	ENST00000332351.3:c.527G>T	p.Arg176Leu	p.R176L	ENST00000332351	NM_024426.4	176	cGc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	180	500	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAGT			P-0045290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	188	640	0	ENST00000269305.4:c.683_686dup	p.Cys229Ter	p.C229*	ENST00000269305	NM_001126112.2	229	tgt/tgACTGt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793338	242793338	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	237	951	0	ENST00000334409.5:c.739G>T	p.Glu247Ter	p.E247*	ENST00000334409	NM_005018.2	247	Gag/Tag																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665260	138665260	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	38	750	0	ENST00000330315.3:c.305del	p.Ile102ThrfsTer48	p.I102Tfs*48	ENST00000330315	NM_023067.3	102	aTc/ac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971123	21971129	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGAGT	TGAGAGT	-			P-0045290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	232	456	0	ENST00000304494.5:c.229_235del	p.Thr77ProfsTer67	p.T77Pfs*67	ENST00000304494	NM_000077.4	77	ACTCTCAcc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971123	21971129	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGAGT	TGAGAGT	-			P-0045290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	232	456	0	ENST00000304494.5:c.229_235del	p.Thr77ProfsTer67	p.T77Pfs*67	ENST00000304494	NM_000077.4	77	ACTCTCAcc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971123	21971129	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGAGT	TGAGAGT	-			P-0045290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	232	456	0	ENST00000304494.5:c.229_235del	p.Thr77ProfsTer67	p.T77Pfs*67	ENST00000304494	NM_000077.4	77	ACTCTCAcc/cc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	19	588	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	18	386	2	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
MED12	9968	MSKCC	GRCh37	X	70351422	70351422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	86	377	0	ENST00000374080.3:c.4070G>A	p.Arg1357His	p.R1357H	ENST00000374080		1357	cGc/cAc																																																																														
IRF4	3662	MSKCC	GRCh37	6	393211	393211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	37	497	0	ENST00000380956.4:c.59G>T	p.Gly20Val	p.G20V	ENST00000380956	NM_001195286.1	20	gGc/gTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2185914	2185915	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAT			P-0045291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	33	574	0	ENST00000398665.3:c.187_189dup	p.Tyr63dup	p.Y63dup	ENST00000398665	NM_032482.2	63	-/TAT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919327	178919327	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0045291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	14	187	0	ENST00000263967.3:c.812A>G	p.Lys271Arg	p.K271R	ENST00000263967	NM_006218.2	271	aAg/aGg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0045293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	90	638	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98232138	98232138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	29	374	0	ENST00000331920.6:c.1804C>T	p.Arg602Ter	p.R602*	ENST00000331920	NM_000264.3	602	Cga/Tga																																																																														
MALT1	10892	MSKCC	GRCh37	18	56409145	56409145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	31	389	0	ENST00000348428.3:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000348428	NM_006785.3	551	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332595	153332595	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	33	424	0	ENST00000281708.4:c.361G>T	p.Glu121Ter	p.E121*	ENST00000281708	NM_033632.3	121	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	27	262	0				ENST00000310581	NM_198253.2																																																																																
REL	5966	MSKCC	GRCh37	2	61145735	61145736	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TG			P-0045293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	31	302	0	ENST00000295025.8:c.847_848delinsTG	p.Glu283Ter	p.E283*	ENST00000295025	NM_002908.2	283	GAa/TGa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790162	40790162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	37	533	0	ENST00000373198.4:c.2569C>T	p.Leu857Phe	p.L857F	ENST00000373198	NM_133170.3	857	Ctt/Ttt																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502473	186502473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	31	250	0	ENST00000323963.5:c.196C>T	p.Pro66Ser	p.P66S	ENST00000323963		66	Ccc/Tcc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244226	153244226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	38	388	0	ENST00000281708.4:c.1931G>A	p.Gly644Glu	p.G644E	ENST00000281708	NM_033632.3	644	gGa/gAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184929	32184929	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0045293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	31	585	0	ENST00000375023.3:c.1738+1G>A		p.X580_splice	ENST00000375023	NM_004557.3	580																																																																															
KMT2C	58508	MSKCC	GRCh37	7	152009023	152009023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	22	291	0	ENST00000262189.6:c.599C>A	p.Ser200Tyr	p.S200Y	ENST00000262189	NM_170606.2	200	tCt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	125	717	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																														
RET	5979	MSKCC	GRCh37	10	43601957	43601957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	60	774	0	ENST00000355710.3:c.1001G>T	p.Trp334Leu	p.W334L	ENST00000355710	NM_020975.4	334	tGg/tTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46298847	46298847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	48	250	1	ENST00000334344.6:c.5494G>A	p.Glu1832Lys	p.E1832K	ENST00000334344	NM_152641.2	1832	Gaa/Aaa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129169	64129169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	103	826	1	ENST00000334205.4:c.707C>T	p.Ser236Leu	p.S236L	ENST00000334205	NM_003942.2	236	tCg/tTg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193094273	193094273	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	58	325	0	ENST00000367435.3:c.163T>A	p.Tyr55Asn	p.Y55N	ENST00000367435	NM_024529.4	55	Tac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827602	72827602	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	62	556	0	ENST00000268489.5:c.8979G>A	p.Trp2993Ter	p.W2993*	ENST00000268489	NM_006885.3	2993	tgG/tgA																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618822	37618825	+	frameshift_variant	Frame_Shift_Del	DEL	AGCC	AGCC	-			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	328	500	0	ENST00000447079.4:c.499_502del	p.Ala167LysfsTer23	p.A167Kfs*23	ENST00000447079	NM_015083.1	166	gtAGCC/gt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619240	37619240	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	179	457	0	ENST00000447079.4:c.916del	p.Ser306AlafsTer32	p.S306Afs*32	ENST00000447079	NM_015083.1	306	Agc/gc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859288	151859288	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	35	246	0	ENST00000262189.6:c.11374C>T	p.Gln3792Ter	p.Q3792*	ENST00000262189	NM_170606.2	3792	Caa/Taa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061227	38061242	+	protein_altering_variant	In_Frame_Del	DEL	GAACATGTTGCCGGAG	GAACATGTTGCCGGAG	C			P-0045142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	82	698	0	ENST00000250448.2:c.747_762delinsG	p.Asp249_Phe254delinsGlu	p.D249_F254delinsE	ENST00000250448	NM_004496.3	249	gaCTCCGGCAACATGTTC/gaG																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347985	89347986	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0045213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	68	973	0	ENST00000301030.4:c.4964_4965del	p.Lys1655ArgfsTer12	p.K1655Rfs*12	ENST00000301030	NM_001256183.1	1655	aAA/a																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591118	67591135	+	inframe_deletion	In_Frame_Del	DEL	ATCCAGCTGAGAAAGACG	ATCCAGCTGAGAAAGACG	-			P-0045213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	17	286	0	ENST00000274335.5:c.1712_1729del	p.Ile571_Thr576del	p.I571_T576del	ENST00000274335		571	ATCCAGCTGAGAAAGACG/-																																																																														
ABL1	25	MSKCC	GRCh37	9	133760753	133760753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	97	878	2	ENST00000318560.5:c.3076G>A	p.Ala1026Thr	p.A1026T	ENST00000318560	NM_005157.4	1026	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882029		P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	415	787	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	59	255	1	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11300489	11300489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	140	893	0	ENST00000361445.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000361445	NM_004958.3	553	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	66	339	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948799	71948799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1254	269	1037	1	ENST00000298229.2:c.3514del	p.Arg1172AlafsTer30	p.R1172Afs*30	ENST00000298229	NM_001567.3	1171	Ccc/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100093	157100117	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCGGCGGCAGCAGCAGGAG	GCGGCGGCGGCGGCAGCAGCAGGAG	-			P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	24	31	0	ENST00000346085.5:c.1044_1068del	p.Ala350MetfsTer11	p.A350Mfs*11	ENST00000346085	NM_020732.3	344	GCGGCGGCGGCGGCAGCAGCAGGAGgc/gc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981981	70981981	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1693	452	1096	1	ENST00000276594.2:c.115T>C	p.Tyr39His	p.Y39H	ENST00000276594	NM_024504.3	39	Tac/Cac																																																																														
SDHC	6391	MSKCC	GRCh37	1	161298205	161298205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	53	459	1	ENST00000367975.2:c.97A>G	p.Thr33Ala	p.T33A	ENST00000367975	NM_003001.3	33	Acg/Gcg																																																																														
PGR	5241	MSKCC	GRCh37	11	100999279	100999279	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	187	869	0	ENST00000325455.5:c.523A>C	p.Ser175Arg	p.S175R	ENST00000325455	NM_001202474.3	175	Agc/Cgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	175	368	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611370	28611370	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	76	486	0	ENST00000241453.7:c.1261G>T	p.Glu421Ter	p.E421*	ENST00000241453	NM_004119.2	421	Gaa/Taa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130390	29130390	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	70	433	0	ENST00000328354.6:c.319+1G>T		p.X107_splice	ENST00000328354	NM_007194.3	107																																																																															
MST1R	4486	MSKCC	GRCh37	3	49936017	49936017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	87	834	0	ENST00000296474.3:c.1653G>T	p.Met551Ile	p.M551I	ENST00000296474	NM_002447.2	551	atG/atT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356236	66356236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	169	523	0	ENST00000273854.3:c.1261C>A	p.Leu421Met	p.L421M	ENST00000273854	NM_004439.5	421	Ctg/Atg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519707	176519707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	108	700	0	ENST00000292408.4:c.979G>C	p.Asp327His	p.D327H	ENST00000292408	NM_213647.1	327	Gac/Cac																																																																														
FLT4	2324	MSKCC	GRCh37	5	180050998	180050998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	150	831	0	ENST00000261937.6:c.1485G>T	p.Gln495His	p.Q495H	ENST00000261937	NM_182925.4	495	caG/caT																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158689	26158689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	17	130	0	ENST00000289316.2:c.292G>T	p.Ala98Ser	p.A98S	ENST00000289316	NM_138720.2	98	Gcc/Tcc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32171979	32171979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	53	543	0	ENST00000375023.3:c.3053C>T	p.Thr1018Ile	p.T1018I	ENST00000375023	NM_004557.3	1018	aCa/aTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045187	47045187	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	154	585	0	ENST00000329236.7:c.2194G>T	p.Glu732Ter	p.E732*	ENST00000329236	NM_001204466.1	732	Gag/Tag																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	114	563	7	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0045221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	305	818	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0045221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	149	494	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	133	411	0	ENST00000342988.3:c.1607T>G	p.Leu536Arg	p.L536R	ENST00000342988	NM_005359.5	536	cTa/cGa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808853	3808853	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0045221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	81	439	0	ENST00000262367.5:c.3369+2T>G		p.X1123_splice	ENST00000262367	NM_004380.2	1123																																																																															
AXL	558	MSKCC	GRCh37	19	41765717	41765717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	204	663	1	ENST00000301178.4:c.2593C>T	p.Arg865Cys	p.R865C	ENST00000301178	NM_021913.4	865	Cgc/Tgc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	191	483	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	111	330	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	215	354	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495023	56495023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2271188		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	613	656	1	ENST00000267101.3:c.3380G>A	p.Arg1127His	p.R1127H	ENST00000267101	NM_001982.3	1127	cGc/cAc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	258	742	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	56	164	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	190	609	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
APC	324	MSKCC	GRCh37	5	112136980	112136980	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	112	353	0	ENST00000257430.4:c.734C>A	p.Ser245Ter	p.S245*	ENST00000257430	NM_000038.5	245	tCa/tAa																																																																														
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	116	321	1	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	190	429	13	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	370	457	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	185	665	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255142	16255143	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	169	433	4	ENST00000375759.3:c.2417_2418delGA	p.Arg806ThrfsTer14	p.R806Tfs*14	ENST00000375759	NM_015001.2	803	GAg/g																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	286	379	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	144	383	2	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864148	57864148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	460	606	0	ENST00000228682.2:c.1625G>A	p.Arg542His	p.R542H	ENST00000228682	NM_005269.2	542	cGc/cAc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	205	664	14	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821638	72821638	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200561133		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	16	87	0	ENST00000268489.5:c.10537A>G	p.Ser3513Gly	p.S3513G	ENST00000268489	NM_006885.3	3513	Agt/Ggt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753011	57753012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	129	346	5	ENST00000274289.3:c.1004dupT	p.Leu335PhefsTer12	p.L335Ffs*12	ENST00000274289	NM_006622.3	335	ttg/ttTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	116	330	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112175969	112175970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	94	255	0	ENST00000257430.4:c.4682dupA	p.Asp1562GlyfsTer5	p.D1562Gfs*5	ENST00000257430	NM_000038.5	1560	gaa/gAaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	160	431	6	ENST00000264010.4:c.950_951delCA	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793253	33793253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	75	139	0	ENST00000498907.2:c.68delC	p.Pro23ArgfsTer137	p.P23Rfs*137	ENST00000498907	NM_004364.3	23	cCg/cg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	521	582	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	198	580	0	ENST00000263967.3:c.1625A>G	p.Glu542Gly	p.E542G	ENST00000263967	NM_006218.2	542	gAa/gGa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748660	43748661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	275	863	2	ENST00000382044.4:c.2145dup	p.Glu716ArgfsTer9	p.E716Rfs*9	ENST00000382044	NM_001141980.1	715	-/A																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519504	137519505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	147	319	0	ENST00000367739.4:c.1132_1133dupAG	p.Ser378ArgfsTer6	p.S378Rfs*6	ENST00000367739	NM_000416.2	378	agt/agAGt																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323315	31323315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	112	439	0	ENST00000412585.2:c.674T>C	p.Leu225Pro	p.L225P	ENST00000412585	NM_005514.6	225	cTg/cCg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026709	6026709	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	332	765	0	ENST00000265849.7:c.1687C>T	p.Arg563Ter	p.R563*	ENST00000265849	NM_000535.5	563	Cga/Tga																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800429	32800429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	420	940	4	ENST00000374899.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000374899	NM_018833.2	373	cGc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972449	32972449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	236	554	0	ENST00000380152.3:c.9799A>G	p.Lys3267Glu	p.K3267E	ENST00000380152		3267	Aag/Gag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991847	72991847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	253	697	0	ENST00000268489.5:c.2198A>G	p.Tyr733Cys	p.Y733C	ENST00000268489	NM_006885.3	733	tAc/tGc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10254644	10254644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148038464		P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	168	498	0	ENST00000340748.4:c.2866G>A	p.Val956Met	p.V956M	ENST00000340748		956	Gtg/Atg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11032293	11032293	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	213	603	0	ENST00000327064.4:c.1687T>C	p.Ser563Pro	p.S563P	ENST00000327064	NM_199141.1	563	Tcc/Ccc																																																																														
NF2	4771	MSKCC	GRCh37	22	30070926	30070926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	204	573	1	ENST00000338641.4:c.1442A>G	p.Tyr481Cys	p.Y481C	ENST00000338641	NM_000268.3	481	tAc/tGc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280778	41280778	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	57	465	0	ENST00000349496.5:c.2291A>C	p.Asp764Ala	p.D764A	ENST00000349496	NM_001904.3	764	gAt/gCt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430208	181430208	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	117	417	0	ENST00000325404.1:c.60del	p.Gly21AlafsTer25	p.G21Afs*25	ENST00000325404	NM_003106.3	20	ggC/gg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31409260	31409260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	160	446	0	ENST00000344624.3:c.3757A>G	p.Ile1253Val	p.I1253V	ENST00000344624		1253	Att/Gtt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31421429	31421429	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	162	463	1	ENST00000344624.3:c.3475A>C	p.Thr1159Pro	p.T1159P	ENST00000344624		1159	Aca/Cca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	186	331	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	228	537	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39241084	39241084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	51	378	0	ENST00000402219.2:c.1987A>G	p.Ile663Val	p.I663V	ENST00000402219	NM_005633.3	663	Ata/Gta																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739888	41739888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	202	324	1	ENST00000242208.4:c.85C>A	p.His29Asn	p.H29N	ENST00000242208	NM_002192.2	29	Cac/Aac																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112764448	112764448	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	49	359	0	ENST00000369452.4:c.1057C>T	p.Gln353Ter	p.Q353*	ENST00000369452	NM_007373.3	353	Cag/Tag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859028	57859028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	320	548	1	ENST00000228682.2:c.524C>T	p.Pro175Leu	p.P175L	ENST00000228682	NM_005269.2	175	cCa/cTa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14014071	14014071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	83	498	0	ENST00000311895.7:c.49G>C	p.Glu17Gln	p.E17Q	ENST00000311895	NM_005236.2	17	Gag/Cag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	250	441	0	ENST00000344626.4:c.3575G>T	p.Arg1192Leu	p.R1192L	ENST00000344626	NM_003072.3	1192	cGc/cTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218339	36218339	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	202	511	0	ENST00000222270.7:c.4118A>C	p.Asp1373Ala	p.D1373A	ENST00000222270	NM_014727.1	1373	gAt/gCt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219963	36219963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	265	523	0	ENST00000222270.7:c.4765G>T	p.Asp1589Tyr	p.D1589Y	ENST00000222270	NM_014727.1	1589	Gat/Tat																																																																														
ACVR1	90	MSKCC	GRCh37	2	158594047	158594047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	69	253	0	ENST00000263640.3:c.1526G>T	p.Cys509Phe	p.C509F	ENST00000263640	NM_001105.4	509	tGt/tTt																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204732670	204732670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	104	339	0	ENST00000302823.3:c.5C>A	p.Ala2Asp	p.A2D	ENST00000302823	NM_005214.4	2	gCt/gAt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38962450	38962450	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	69	96	0	ENST00000357387.3:c.1682A>G	p.Asn561Ser	p.N561S	ENST00000357387	NM_152756.3	561	aAt/aGt																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137524824	137524824	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	85	237	0	ENST00000367739.4:c.547-2A>G		p.X183_splice	ENST00000367739	NM_000416.2	183																																																																															
MET	4233	MSKCC	GRCh37	7	116414934	116414934	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	176	435	2	ENST00000397752.3:c.3029-1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145736899	145736899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	355	570	4	ENST00000428558.2:c.3542G>A	p.Arg1181Gln	p.R1181Q	ENST00000428558	NM_004260.3	1181	cGa/cAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929245	44929245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	72	241	0	ENST00000377967.4:c.2345C>T	p.Ala782Val	p.A782V	ENST00000377967	NM_021140.2	782	gCc/gTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174416	11174416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	100	629	0	ENST00000361445.4:c.7259C>T	p.Ala2420Val	p.A2420V	ENST00000361445	NM_004958.3	2420	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	16	578	2	ENST00000269305.4:c.559G>A	p.Gly187Ser	p.G187S	ENST00000269305	NM_001126112.2	187	Ggt/Agt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26022338	26022341	+	frameshift_variant	Frame_Shift_Del	DEL	CTGA	CTGA	-			P-0044365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	30	389	0	ENST00000435504.4:c.316_319del	p.Ser106IlefsTer60	p.S106Ifs*60	ENST00000435504		106	TCAGat/at																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249013	55249014	+	protein_altering_variant	In_Frame_Ins	INS	AA	AA	GGGTT			P-0044365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	99	595	0	ENST00000275493.2:c.2311_2312delinsGGGTT	p.Asn771delinsGlyPhe	p.N771delinsGF	ENST00000275493	NM_005228.3	771	AAc/GGGTTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	41	590	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	174	395	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	127	373	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
CASP8	841	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	180	444	0	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	189	502	3	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	179	472	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	262	568	1	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
CDH1	999	MSKCC	GRCh37	16	68849514	68849514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36087757		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	55	658	0	ENST00000261769.5:c.1417G>A	p.Val473Ile	p.V473I	ENST00000261769	NM_004360.3	473	Gtc/Atc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	284	617	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069060	5069060	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	106	402	0	ENST00000381652.3:c.1370del	p.Asn457MetfsTer22	p.N457Mfs*22	ENST00000381652	NM_004972.3	455	acA/ac																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63760023	63760023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	34	429	0	ENST00000279873.7:c.676C>T	p.Arg226Trp	p.R226W	ENST00000279873	NM_032199.2	226	Cgg/Tgg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	73	787	1	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829283	72829283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	278	756	1	ENST00000268489.5:c.7298C>T	p.Ala2433Val	p.A2433V	ENST00000268489	NM_006885.3	2433	gCg/gTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	54	128	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143043366	143043366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199940140		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	123	456	0	ENST00000262992.4:c.2050G>A	p.Val684Ile	p.V684I	ENST00000262992	NM_001101669.1	684	Gtt/Att																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489486	40489486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	293	622	0	ENST00000264657.5:c.764C>T	p.Pro255Leu	p.P255L	ENST00000264657	NM_139276.2	255	cCg/cTg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279860	46279861	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAA	rs753491875		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	29	493	0	ENST00000371998.3:c.3788_3789insACA	p.Gln1276dup	p.Q1276dup	ENST00000371998		1276	-/CAA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520087	106520087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	67	305	0	ENST00000359195.3:c.2515C>T	p.Arg839Cys	p.R839C	ENST00000359195	NM_002649.2	839	Cgc/Tgc																																																																														
CDH1	999	MSKCC	GRCh37	16	68867370	68867370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	265	510	0	ENST00000261769.5:c.2617G>A	p.Ala873Thr	p.A873T	ENST00000261769	NM_004360.3	873	Gct/Act																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435168	56435168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	340	748	3	ENST00000407977.2:c.1969C>T	p.Arg657Trp	p.R657W	ENST00000407977		657	Cgg/Tgg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803111	1803111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	354	704	4	ENST00000260795.2:c.463C>T	p.Arg155Trp	p.R155W	ENST00000260795		155	Cgg/Tgg																																																																														
CD276	80381	MSKCC	GRCh37	15	73996200	73996200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	244	510	0	ENST00000318443.5:c.934G>A	p.Ala312Thr	p.A312T	ENST00000318443	NM_001024736.1	312	Gcc/Acc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564680	86564680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	299	720	0	ENST00000274376.6:c.416delC	p.Pro139LeufsTer35	p.P139Lfs*35	ENST00000274376	NM_002890.2	138	Ccc/cc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	238	609	4	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																														
FYN	2534	MSKCC	GRCh37	6	112020818	112020819	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	225	482	0	ENST00000368678.4:c.752dupC	p.Gln252ThrfsTer7	p.Q252Tfs*7	ENST00000368678		251	cca/ccCa																																																																														
ABL1	25	MSKCC	GRCh37	9	133759781	133759783	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	249	655	0	ENST00000318560.5:c.2111_2113del	p.Glu704del	p.E704del	ENST00000318560	NM_005157.4	702	GAG/-																																																																														
ATRX	546	MSKCC	GRCh37	X	76937603	76937603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	59	409	1	ENST00000373344.5:c.3145del	p.Ile1049Ter	p.I1049*	ENST00000373344	NM_000489.3	1049	Ata/ta																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	302	780	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	228	636	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
B2M	567	MSKCC	GRCh37	15	45007794	45007797	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	80	495	0	ENST00000558401.1:c.244_247del	p.Phe82IlefsTer20	p.F82Ifs*20	ENST00000558401	NM_004048.2	81	TCTTtc/tc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	62	651	1	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	68	302	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	76	523	10	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980558	1980559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs752037034		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	282	698	21	ENST00000382891.5:c.4028dup	p.Glu1344ArgfsTer91	p.E1344Rfs*91	ENST00000382891	NM_133335.3	1340	-/C																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412124	63412124	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	390	963	0	ENST00000330258.3:c.1043del	p.Gly348AlafsTer16	p.G348Afs*16	ENST00000330258	NM_152424.3	348	gGc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578480	7578480	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	449	767	7	ENST00000269305.4:c.450del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	150	acA/ac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	248	623	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738829	145738829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	110	815	0	ENST00000428558.2:c.2236G>A	p.Ala746Thr	p.A746T	ENST00000428558	NM_004260.3	746	Gcg/Acg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426093	47426094	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	261	778	2	ENST00000377045.4:c.619dup	p.Leu207ProfsTer36	p.L207Pfs*36	ENST00000377045	NM_001654.4	205	gcc/gCcc																																																																														
ATR	545	MSKCC	GRCh37	3	142274740	142274741	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	94	399	1	ENST00000350721.4:c.2319_2320delAA	p.Lys773AsnfsTer3	p.K773Nfs*3	ENST00000350721	NM_001184.3	773	aaAAta/aata																																																																														
BCL6	604	MSKCC	GRCh37	3	187447334	187447335	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	306	667	0	ENST00000232014.4:c.858dup	p.Ser287LeufsTer11	p.S287Lfs*11	ENST00000232014	NM_001130845.1	286	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	287	649	0	ENST00000269305.4:c.559+2T>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162704	47162704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142723093		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	131	472	0	ENST00000409792.3:c.3422C>T	p.Pro1141Leu	p.P1141L	ENST00000409792	NM_014159.6	1141	cCg/cTg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46740268	46740268	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs28363243		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	259	528	0	ENST00000371975.4:c.1748T>C	p.Ile583Thr	p.I583T	ENST00000371975	NM_003579.3	583	aTt/aCt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434561	49434562	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	275	704	2	ENST00000301067.7:c.6991dup	p.Leu2331ProfsTer46	p.L2331Pfs*46	ENST00000301067	NM_003482.3	2331	ctg/cCtg																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374711	149374711	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	213	589	0	ENST00000360632.3:c.383del	p.Pro128ArgfsTer5	p.P128Rfs*5	ENST00000360632	NM_015472.4	128	cCg/cg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467987	50467987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	275	561	0	ENST00000331340.3:c.1222C>T	p.Arg408Cys	p.R408C	ENST00000331340	NM_006060.4	408	Cgc/Tgc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022880	12022880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	355	710	0	ENST00000396373.4:c.986C>T	p.Ala329Val	p.A329V	ENST00000396373	NM_001987.4	329	gCc/gTc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264377	46264378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	181	458	0	ENST00000371998.3:c.1427dup	p.Asn476LysfsTer11	p.N476Kfs*11	ENST00000371998		475	cca/ccAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944151	81944151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	268	652	0	ENST00000359376.3:c.1760G>A	p.Arg587Gln	p.R587Q	ENST00000359376	NM_002661.3	587	cGg/cAg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987066	36987066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	293	604	1	ENST00000354822.5:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000354822	NM_001079668.2	208	cGa/cAa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874550	35874550	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	180	500	0	ENST00000303115.3:c.707-1G>A		p.X236_splice	ENST00000303115	NM_002185.3	236																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599937	10599937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	430	668	2	ENST00000171111.5:c.1639G>A	p.Val547Ile	p.V547I	ENST00000171111	NM_203500.1	547	Gta/Ata																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981438	70981438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	385	842	0	ENST00000276594.2:c.658C>A	p.His220Asn	p.H220N	ENST00000276594	NM_024504.3	220	Cac/Aac																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404813	404813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	244	601	0	ENST00000399788.2:c.4381G>A	p.Glu1461Lys	p.E1461K	ENST00000399788	NM_001042603.1	1461	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1294672	1294672	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	192	374	0	ENST00000310581.5:c.329del	p.Gly110AlafsTer18	p.G110Afs*18	ENST00000310581	NM_198253.2	110	gGc/gc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11210190	11210190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	50	525	0	ENST00000361445.4:c.4563G>T	p.Trp1521Cys	p.W1521C	ENST00000361445	NM_004958.3	1521	tgG/tgT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101515	27101516	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	409	781	0	ENST00000324856.7:c.4800_4801del	p.Pro1601Ter	p.P1601*	ENST00000324856	NM_006015.4	1599	acCTct/acct																																																																														
JAK1	3716	MSKCC	GRCh37	1	65309777	65309777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	300	583	0	ENST00000342505.4:c.2373G>T	p.Glu791Asp	p.E791D	ENST00000342505	NM_002227.2	791	gaG/gaT																																																																														
JAK1	3716	MSKCC	GRCh37	1	65312411	65312413	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	217	538	0	ENST00000342505.4:c.1906_1908del	p.Phe636del	p.F636del	ENST00000342505	NM_002227.2	636	TTC/-																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115282416	115282416	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	181	572	0	ENST00000438362.2:c.234del	p.Lys78AsnfsTer3	p.K78Nfs*3	ENST00000438362	NM_001242891.1	78	aaA/aa																																																																														
TET1	80312	MSKCC	GRCh37	10	70333316	70333316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	360	756	1	ENST00000373644.4:c.1221G>T	p.Glu407Asp	p.E407D	ENST00000373644	NM_030625.2	407	gaG/gaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711974	89711974	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	103	385	1	ENST00000371953.3:c.592A>G	p.Met198Val	p.M198V	ENST00000371953	NM_000314.4	198	Atg/Gtg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633581	69633581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	98	155	0	ENST00000334134.2:c.121G>A	p.Gly41Arg	p.G41R	ENST00000334134	NM_005247.2	41	Ggg/Agg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71947023	71947024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	306	816	0	ENST00000298229.2:c.2877dup	p.Arg960GlnfsTer9	p.R960Qfs*9	ENST00000298229	NM_001567.3	958	acc/aCcc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307256	118307256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	126	193	0	ENST00000534358.1:c.29C>T	p.Pro10Leu	p.P10L	ENST00000534358	NM_005933.3	10	cCc/cTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307291	118307293	+	inframe_deletion	In_Frame_Del	DEL	GGG	GGG	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	12	58	0	ENST00000534358.1:c.67_69del	p.Gly23del	p.G23del	ENST00000534358	NM_005933.3	22	GGG/-																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118365442	118365442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	119	394	1	ENST00000534358.1:c.5327del	p.Lys1776SerfsTer47	p.K1776Sfs*47	ENST00000534358	NM_005933.3	1775	Aaa/aa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14016051	14016051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	19	280	1	ENST00000311895.7:c.371C>A	p.Pro124His	p.P124H	ENST00000311895	NM_005236.2	124	cCt/cAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993824	72993824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	168	555	0	ENST00000268489.5:c.221C>A	p.Pro74His	p.P74H	ENST00000268489	NM_006885.3	74	cCc/cAc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89857898	89857904	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCTGG	CAGCTGG	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	325	636	0	ENST00000389301.3:c.1266_1272del	p.Cys422TrpfsTer102	p.C422Wfs*102	ENST00000389301	NM_000135.2	422	tgCCAGCTG/tg																																																																														
RARA	5914	MSKCC	GRCh37	17	38511582	38511582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	336	736	0	ENST00000254066.5:c.1080G>T	p.Lys360Asn	p.K360N	ENST00000254066	NM_000964.3	360	aaG/aaT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245803	41245803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	176	637	0	ENST00000357654.3:c.1745C>T	p.Thr582Met	p.T582M	ENST00000357654	NM_007294.3	582	aCg/aTg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78704382	78704382	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	218	477	0	ENST00000306801.3:c.530T>G	p.Leu177Arg	p.L177R	ENST00000306801	NM_020761.2	177	cTg/cGg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78919559	78919559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	267	504	0	ENST00000306801.3:c.3118G>A	p.Val1040Ile	p.V1040I	ENST00000306801	NM_020761.2	1040	Gta/Ata																																																																														
YES1	7525	MSKCC	GRCh37	18	746034	746034	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	55	478	0	ENST00000314574.4:c.488T>C	p.Met163Thr	p.M163T	ENST00000314574	NM_005433.3	163	aTg/aCg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5207934	5207934	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	307	632	1	ENST00000357368.4:c.5777A>G	p.Glu1926Gly	p.E1926G	ENST00000357368	NM_002850.3	1926	gAg/gGg																																																																														
AXL	558	MSKCC	GRCh37	19	41765647	41765647	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	387	753	2	ENST00000301178.4:c.2528del	p.Pro843GlnfsTer113	p.P843Qfs*113	ENST00000301178	NM_021913.4	841	gaC/ga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967284	25967284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1338721842		P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	240	522	0	ENST00000435504.4:c.1922G>A	p.Arg641His	p.R641H	ENST00000435504		641	cGt/cAt																																																																														
CASP8	841	MSKCC	GRCh37	2	202149569	202149570	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	195	424	0	ENST00000358485.4:c.1014dup	p.Glu339Ter	p.E339*	ENST00000358485	NM_001080125.1	337	cat/caTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467529	66467529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	156	406	0	ENST00000273854.3:c.740T>C	p.Ile247Thr	p.I247T	ENST00000273854	NM_004439.5	247	aTc/aCc																																																																														
APC	324	MSKCC	GRCh37	5	112164590	112164590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	133	295	0	ENST00000257430.4:c.1664C>T	p.Ala555Val	p.A555V	ENST00000257430	NM_000038.5	555	gCa/gTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638434	176638434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	360	746	3	ENST00000439151.2:c.3034C>T	p.Arg1012Cys	p.R1012C	ENST00000439151	NM_022455.4	1012	Cgt/Tgt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32171977	32171977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	297	543	0	ENST00000375023.3:c.3055G>T	p.Gly1019Cys	p.G1019C	ENST00000375023	NM_004557.3	1019	Ggc/Tgc																																																																														
PARK2	0	MSKCC	GRCh37	6	162864416	162864416	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	272	533	2	ENST00000366898.1:c.97C>T	p.Arg33Ter	p.R33*	ENST00000366898	NM_004562.2	33	Cga/Tga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739831	41739831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	233	552	0	ENST00000242208.4:c.142C>T	p.Pro48Ser	p.P48S	ENST00000242208	NM_002192.2	48	Ccc/Tcc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148543631	148543631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	42	481	0	ENST00000320356.2:c.177A>T	p.Glu59Asp	p.E59D	ENST00000320356	NM_004456.4	59	gaA/gaT																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146034	38146034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	402	714	0	ENST00000317025.8:c.3472G>T	p.Gly1158Cys	p.G1158C	ENST00000317025	NM_023034.1	1158	Ggc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970904	21970904	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	364	612	0	ENST00000304494.5:c.454T>G	p.Ser152Ala	p.S152A	ENST00000304494	NM_000077.4	152	Tca/Gca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970904	21970904	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	364	612	0	ENST00000304494.5:c.454T>G	p.Ser152Ala	p.S152A	ENST00000304494	NM_000077.4	152	Tca/Gca																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417382	139417382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	293	678	0	ENST00000277541.6:c.662C>T	p.Pro221Leu	p.P221L	ENST00000277541	NM_017617.3	221	cCc/cTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47004874	47004874	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	267	588	2	ENST00000329236.7:c.-136G>A		p.*46*	ENST00000329236	NM_001204466.1																																																																																
ATRX	546	MSKCC	GRCh37	X	76918934	76918934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	243	652	1	ENST00000373344.5:c.4057G>A	p.Gly1353Arg	p.G1353R	ENST00000373344	NM_000489.3	1353	Gga/Aga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123181270	123181270	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	42	392	1	ENST00000218089.9:c.734A>G	p.Gln245Arg	p.Q245R	ENST00000218089	NM_001042749.1	245	cAa/cGa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525838	148525838	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	35	277	0	ENST00000320356.2:c.619C>T	p.Arg207Ter	p.R207*	ENST00000320356	NM_004456.4	207	Cga/Tga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420191	88420191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	256	456	0	ENST00000360948.2:c.2495C>A	p.Pro832Gln	p.P832Q	ENST00000360948	NM_001012338.2	832	cCa/cAa																																																																														
RFWD2	0	MSKCC	GRCh37	1	176015347	176015347	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	39	336	0	ENST00000367669.3:c.1391A>G	p.Glu464Gly	p.E464G	ENST00000367669	NM_022457.5	464	gAg/gGg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196068	67196068	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	211	630	0	ENST00000312629.5:c.52G>C	p.Glu18Gln	p.E18Q	ENST00000312629	NM_003952.2	18	Gag/Cag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954151	32954151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	32	395	0	ENST00000380152.3:c.9125A>G	p.Asp3042Gly	p.D3042G	ENST00000380152		3042	gAt/gGt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647631	23647632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	30	360	1	ENST00000261584.4:c.235dup	p.Tyr79LeufsTer2	p.Y79Lfs*2	ENST00000261584	NM_024675.3	79	tat/tTat																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533517	63533517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	373	755	1	ENST00000307078.5:c.1637G>A	p.Gly546Asp	p.G546D	ENST00000307078	NM_004655.3	546	gGc/gAc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464432	25464433	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GC			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	428	430	0	ENST00000264709.3:c.2079_2080dup	p.His694ArgfsTer12	p.H694Rfs*12	ENST00000264709	NM_175629.2	694	cat/cGCat																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26055512	26056015	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	AGAGAAAAGAGGCAAAACTTTTAAGTCACAGTAAAGCAAAAAACACAGAATAAGCAACGTCTTCCACCATCCAATTAAATACAGAATGAAAGTCATGTACTAGAAGAACGGACCAACCCGGGAGCAGGGCGGGACTTTTGAAAATTTTTTAGTCCAATCCGGACATCCCTTTAGACTAAGAAACTGGCTCTTGTTTTGCGGTCTTTTCTGCCGTTCACAGGCCTGGGGCGGGACTGCCATCCCAAAACCATCCGCCAGCGAGAAAAGCCTCCGGTCAGGGACCTAGAAGCCGCAATAAAGGTTTAAATGCTGTAACCTCACCACGGCCACTCTCCAACCCCGTCACCCAATTCGTCTGATACCTCAGTAACTCCCATACGACTAACCTTAAGTAACAGGGCAGAACAAGAAAAGGCAGATAGTAAAGAAATTATCCAGCTCTTTTATTGAGATCAGTGGTGGCTCTGAAAAGAGCCTTTTGGGTTTTAGAAGTAGGCGTTCGCC	AGAGAAAAGAGGCAAAACTTTTAAGTCACAGTAAAGCAAAAAACACAGAATAAGCAACGTCTTCCACCATCCAATTAAATACAGAATGAAAGTCATGTACTAGAAGAACGGACCAACCCGGGAGCAGGGCGGGACTTTTGAAAATTTTTTAGTCCAATCCGGACATCCCTTTAGACTAAGAAACTGGCTCTTGTTTTGCGGTCTTTTCTGCCGTTCACAGGCCTGGGGCGGGACTGCCATCCCAAAACCATCCGCCAGCGAGAAAAGCCTCCGGTCAGGGACCTAGAAGCCGCAATAAAGGTTTAAATGCTGTAACCTCACCACGGCCACTCTCCAACCCCGTCACCCAATTCGTCTGATACCTCAGTAACTCCCATACGACTAACCTTAAGTAACAGGGCAGAACAAGAAAAGGCAGATAGTAAAGAAATTATCCAGCTCTTTTATTGAGATCAGTGGTGGCTCTGAAAAGAGCCTTTTGGGTTTTAGAAGTAGGCGTTCGCC	-			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	1	70	0				ENST00000343677	NM_005319.3	214		1/1																																																																													
PMS2	5395	MSKCC	GRCh37	7	6026871	6026871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	644	570	0	ENST00000265849.7:c.1525C>T	p.Pro509Ser	p.P509S	ENST00000265849	NM_000535.5	509	Cca/Tca																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995491	68995491	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	15	464	0	ENST00000288368.4:c.1895T>C	p.Val632Ala	p.V632A	ENST00000288368	NM_024870.2	632	gTc/gCc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430650	80430650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	33	411	0	ENST00000286548.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000286548	NM_002072.3	120	Aag/Gag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342618	87342618	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	128	444	0	ENST00000277120.3:c.903G>C	p.Trp301Cys	p.W301C	ENST00000277120		301	tgG/tgC																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564164	139564164	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	413	926	2	ENST00000308874.7:c.304T>C	p.Cys102Arg	p.C102R	ENST00000308874		102	Tgt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0045263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	94	615	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
STK11	6794	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0045263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	108	760	1	ENST00000326873.7:c.598-2A>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602910	10602910	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	138	781	0	ENST00000171111.5:c.668T>G	p.Leu223Arg	p.L223R	ENST00000171111	NM_203500.1	223	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	872	833	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
SESN1	27244	MSKCC	GRCh37	6	109309846	109309846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	337	651	0	ENST00000436639.2:c.1469G>T	p.Arg490Leu	p.R490L	ENST00000436639	NM_014454.2	490	cGt/cTt																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	250	812	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056181	27056181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	112	712	0	ENST00000324856.7:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000324856	NM_006015.4	393	Cag/Tag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435151	18435151	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183245589		P-0045313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	33	477	0	ENST00000266497.5:c.136G>A	p.Glu46Lys	p.E46K	ENST00000266497		46	Gag/Aag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098884	178099449	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTTTTTTCTGTTTTTCCAGCTCATACTCTTTCCGTCGCTGACTGAAGTCAAATACTTCTCGACTTACTCCAAGATCTATATCTTGCCTCCAAAGTATGTCAATCAAATCCATGTCCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAAATGACAGATACCACATAAATTAATTCACATTATGCCACTGTTGATGGTGGGAAGTGGGGAGATTACAAATACAATCTAAATGAGAACACAGATCCAATGTTCTAGAAGAGCACAGTTAATTCCATTCAATGAATCTATTCATTAAAGACAACAAACAACCTACAAACACATAGCCATCCATTCTAATCACTTGGATCATTAATGATAGGGTGATGGTAGAGGTCACTAAAGGGCAAAGTCACAAATGGTTTGAATGAGAAGAAATCCCACCCTTGTTTAATGGAATATAGAAATTAGAGCAAGCACTCTAAGCCACTGGCTTATATAAGAGAAGTGGGGTCTGGAAAACATTACTGAATACATGGAGTTTTCTTTAAACTTTGCTCAGCAAATATCCAGTTTAT	AGTTTTTTCTGTTTTTCCAGCTCATACTCTTTCCGTCGCTGACTGAAGTCAAATACTTCTCGACTTACTCCAAGATCTATATCTTGCCTCCAAAGTATGTCAATCAAATCCATGTCCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAAATGACAGATACCACATAAATTAATTCACATTATGCCACTGTTGATGGTGGGAAGTGGGGAGATTACAAATACAATCTAAATGAGAACACAGATCCAATGTTCTAGAAGAGCACAGTTAATTCCATTCAATGAATCTATTCATTAAAGACAACAAACAACCTACAAACACATAGCCATCCATTCTAATCACTTGGATCATTAATGATAGGGTGATGGTAGAGGTCACTAAAGGGCAAAGTCACAAATGGTTTGAATGAGAAGAAATCCCACCCTTGTTTAATGGAATATAGAAATTAGAGCAAGCACTCTAAGCCACTGGCTTATATAAGAGAAGTGGGGTCTGGAAAACATTACTGAATACATGGAGTTTTCTTTAAACTTTGCTCAGCAAATATCCAGTTTAT	-			P-0045313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	134	650	0	ENST00000397062.3:c.46-450_161del		p.X16_splice	ENST00000397062	NM_006164.4	16																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713864	30713864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	460	724	0	ENST00000359013.4:c.1264G>C	p.Asp422His	p.D422H	ENST00000359013	NM_001024847.2	422	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0045315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	505	563	1	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720709	89720709	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	116	75	0	ENST00000371953.3:c.860C>A	p.Ser287Ter	p.S287*	ENST00000371953	NM_000314.4	287	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	469	752	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175492	112175493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	214	393	0	ENST00000257430.4:c.4203dup	p.Ala1402CysfsTer7	p.A1402Cfs*7	ENST00000257430	NM_000038.5	1401	att/aTtt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18466993	18466993	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	113	379	0	ENST00000266497.5:c.1132C>T	p.Arg378Ter	p.R378*	ENST00000266497		378	Cga/Tga																																																																														
TOP1	7150	MSKCC	GRCh37	20	39741455	39741455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	163	472	0	ENST00000361337.2:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000361337	NM_003286.2	448	Cgg/Tgg																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793202	33793202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	40	84	0	ENST00000498907.2:c.119C>T	p.Ala40Val	p.A40V	ENST00000498907	NM_004364.3	40	gCg/gTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117868	70117868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	375	500	0	ENST00000245479.2:c.336C>A	p.Phe112Leu	p.F112L	ENST00000245479	NM_000346.3	112	ttC/ttA																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281592	49281593	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1240	128	750	0	ENST00000282018.3:c.639_640insG	p.Phe214ValfsTer72	p.F214Vfs*72	ENST00000282018	NM_020377.2	213	-/G																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	96	437	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566827	212566827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	137	323	0	ENST00000342788.4:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000342788	NM_005235.2	452	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637711	52637711	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	111	434	0	ENST00000394830.3:c.2605C>T	p.Gln869Ter	p.Q869*	ENST00000394830	NM_018313.4	869	Cag/Tag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026184	71026184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	124	355	0	ENST00000318789.4:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000318789	NM_032682.5	480	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	157	351	1				ENST00000310581	NM_198253.2																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176517620	176517620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	253	804	1	ENST00000292408.4:c.321G>A	p.Met107Ile	p.M107I	ENST00000292408	NM_213647.1	107	atG/atA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248702	212248702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	184	447	0	ENST00000342788.4:c.3565C>T	p.His1189Tyr	p.H1189Y	ENST00000342788	NM_005235.2	1189	Cac/Tac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829797	72829797	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	269	680	0	ENST00000268489.5:c.6784G>C	p.Asp2262His	p.D2262H	ENST00000268489	NM_006885.3	2262	Gat/Cat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677899	117677899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	91	410	0	ENST00000368508.3:c.4034C>T	p.Ser1345Phe	p.S1345F	ENST00000368508	NM_002944.2	1345	tCt/tTt																																																																														
XIAP	331	MSKCC	GRCh37	X	123020387	123020387	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0045319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	112	277	0	ENST00000355640.3:c.875T>C	p.Leu292Ser	p.L292S	ENST00000355640		292	tTa/tCa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	16	672	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121791	2121792	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	10	718	0	ENST00000219476.3:c.1959_1960delAG	p.Gly654LeufsTer2	p.G654Lfs*2	ENST00000219476	NM_000548.3	651	ccAGag/ccag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	24	684	1	ENST00000263388.2:c.125delC	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	53	411	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509127	66509127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145126637		P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	14	362	0	ENST00000273854.3:c.200G>A	p.Arg67His	p.R67H	ENST00000273854	NM_004439.5	67	cGc/cAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	29	369	0	ENST00000274335.5:c.1727_1729delCGA	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29579996	29579996	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	32	373	2	ENST00000358273.4:c.4157delA	p.Lys1386ArgfsTer20	p.K1386Rfs*20	ENST00000358273	NM_001042492.2	1384	gAa/ga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508805	106508805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	10	585	0	ENST00000359195.3:c.799G>A	p.Glu267Lys	p.E267K	ENST00000359195	NM_002649.2	267	Gaa/Aaa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	33	715	3	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627501	37627501	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	21	536	1	ENST00000447079.4:c.1421delA	p.Asn474IlefsTer8	p.N474Ifs*8	ENST00000447079	NM_015083.1	472	gtA/gt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863319	57863319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	24	779	1	ENST00000228682.2:c.1418del	p.Gly473AlafsTer40	p.G473Afs*40	ENST00000228682	NM_005269.2	472	Ggg/gg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588798	52588798	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	27	688	1	ENST00000394830.3:c.4230del	p.Pro1411LeufsTer21	p.P1411Lfs*21	ENST00000394830	NM_018313.4	1410	ggG/gg																																																																														
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	12	370	1	ENST00000350721.4:c.5440delA	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	98	701	2	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	27	524	6	ENST00000399788.2:c.3597dupA	p.Gly1200ArgfsTer7	p.G1200Rfs*7	ENST00000399788	NM_001042603.1	1199	-/A																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303220	15303220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	18	822	1	ENST00000263388.2:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000263388	NM_000435.2	103	cGa/cAa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485403	57485403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	17	368	0	ENST00000371085.3:c.985G>A	p.Gly329Arg	p.G329R	ENST00000371085	NM_000516.4	329	Gga/Aga																																																																														
MGA	23269	MSKCC	GRCh37	15	42054541	42054541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	14	384	2	ENST00000219905.7:c.7731delA	p.Asp2578ThrfsTer10	p.D2578Tfs*10	ENST00000219905	NM_001164273.1	2575	agA/ag																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	15	725	0	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																														
MGA	23269	MSKCC	GRCh37	15	42042077	42042077	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	23	563	1	ENST00000219905.7:c.6276delA	p.Ala2093ProfsTer9	p.A2093Pfs*9	ENST00000219905	NM_001164273.1	2091	gAa/ga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366207	15366207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	32	791	0	ENST00000263377.2:c.1948G>A	p.Asp650Asn	p.D650N	ENST00000263377	NM_058243.2	650	Gac/Aac																																																																														
IRF4	3662	MSKCC	GRCh37	6	394902	394902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	10	582	0	ENST00000380956.4:c.298G>A	p.Ala100Thr	p.A100T	ENST00000380956	NM_001195286.1	100	Gct/Act																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	33	606	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	13	832	4	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031919	10031919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	23	735	1	ENST00000330684.3:c.904G>A	p.Ala302Thr	p.A302T	ENST00000330684	NM_001134407.1	302	Gct/Act																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902297	50902297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	15	824	0	ENST00000440232.2:c.193del	p.Val65LeufsTer11	p.V65Lfs*11	ENST00000440232	NM_002691.3	63	gaG/ga																																																																														
APC	324	MSKCC	GRCh37	5	112176395	112176395	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	11	355	0	ENST00000257430.4:c.5104G>T	p.Gly1702Ter	p.G1702*	ENST00000257430	NM_000038.5	1702	Gga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344494	118344495	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	16	300	4	ENST00000534358.1:c.2629_2630del	p.Asp877ProfsTer8	p.D877Pfs*8	ENST00000534358	NM_005933.3	874	AGa/a																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856434	111856434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	17	235	0	ENST00000341259.2:c.489delC	p.Thr165ProfsTer32	p.T165Pfs*32	ENST00000341259	NM_005475.2	162	gCc/gc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866417	37866417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	61	757	0	ENST00000269571.5:c.722C>T	p.Ala241Val	p.A241V	ENST00000269571		241	gCt/gTt																																																																														
MET	4233	MSKCC	GRCh37	7	116340270	116340270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	49	360	0	ENST00000397752.3:c.1132G>A	p.Val378Ile	p.V378I	ENST00000397752	NM_000245.2	378	Gtc/Atc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	79	765	1	ENST00000407977.2:c.349_350delinsA	p.Arg117ThrfsTer41	p.R117Tfs*41	ENST00000407977		117	CGc/Ac																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946749	17946749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	34	778	0	ENST00000458235.1:c.1898A>G	p.Tyr633Cys	p.Y633C	ENST00000458235	NM_000215.3	633	tAc/tGc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001523	150001523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	21	450	0	ENST00000253339.5:c.2081G>A	p.Arg694His	p.R694H	ENST00000253339		694	cGt/cAt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562607	21562607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	22	282	0	ENST00000382592.4:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000382592	NM_014572.2	438	Gcg/Acg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118363835	118363835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	50	583	0	ENST00000534358.1:c.5068G>A	p.Glu1690Lys	p.E1690K	ENST00000534358	NM_005933.3	1690	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879593	151879594	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	10	370	0	ENST00000262189.6:c.5349_5351dup	p.Gln1787dup	p.Q1787dup	ENST00000262189	NM_170606.2	1787	caa/caGCAa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465624	99465624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	22	600	0	ENST00000268035.6:c.2449G>A	p.Ala817Thr	p.A817T	ENST00000268035	NM_000875.3	817	Gcc/Acc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782277	56782277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	30	629	3	ENST00000308159.5:c.118G>A	p.Gly40Arg	p.G40R	ENST00000308159	NM_014669.4	40	Gga/Aga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426237	49426242	+	inframe_deletion	In_Frame_Del	DEL	GGCTGG	GGCTGG	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	48	838	0	ENST00000301067.7:c.12246_12251del	p.Gln4085_Pro4086del	p.Q4085_P4086del	ENST00000301067	NM_003482.3	4082	ccCCAGCCt/cct																																																																														
MSI1	4440	MSKCC	GRCh37	12	120783422	120783422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	30	715	0	ENST00000257552.2:c.1061C>T	p.Ala354Val	p.A354V	ENST00000257552	NM_002442.3	354	gCc/gTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435513	110435513	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	26	464	0	ENST00000375856.3:c.2888del	p.Pro963ArgfsTer17	p.P963Rfs*17	ENST00000375856	NM_003749.2	963	cCg/cg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274064	10274064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	15	762	1	ENST00000330684.3:c.205G>A	p.Val69Met	p.V69M	ENST00000330684	NM_001134407.1	69	Gtg/Atg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865863	56865863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	29	435	0	ENST00000308159.5:c.1195G>A	p.Val399Ile	p.V399I	ENST00000308159	NM_014669.4	399	Gtc/Atc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348062	89348062	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	35	1013	1	ENST00000301030.4:c.4888G>T	p.Gly1630Trp	p.G1630W	ENST00000301030	NM_001256183.1	1630	Ggg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29663905	29663905	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	29	401	0	ENST00000358273.4:c.6400T>C	p.Cys2134Arg	p.C2134R	ENST00000358273	NM_001042492.2	2134	Tgt/Cgt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39629551	39629551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	29	380	0	ENST00000262039.4:c.2245C>A	p.Leu749Ile	p.L749I	ENST00000262039	NM_002647.2	749	Ctt/Att																																																																														
PMAIP1	5366	MSKCC	GRCh37	18	57567417	57567417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	49	527	0	ENST00000316660.6:c.8G>T	p.Gly3Val	p.G3V	ENST00000316660	NM_021127.2	3	gGg/gTg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39285942	39285942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	25	336	0	ENST00000402219.2:c.217C>T	p.Arg73Cys	p.R73C	ENST00000402219	NM_005633.3	73	Cgt/Tgt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99149918	99149918	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	16	585	1	ENST00000074304.5:c.230A>G	p.Gln77Arg	p.Q77R	ENST00000074304	NM_001134224.1	77	cAg/cGg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660165	227660165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	29	713	0	ENST00000305123.5:c.3290G>A	p.Arg1097Gln	p.R1097Q	ENST00000305123	NM_005544.2	1097	cGg/cAg																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961357	54961357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	38	524	0	ENST00000312783.6:c.275T>C	p.Leu92Pro	p.L92P	ENST00000312783	NM_198436.1	92	cTg/cCg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37092010	37092010	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	21	491	0	ENST00000231790.2:c.2138del	p.Lys713SerfsTer70	p.K713Sfs*70	ENST00000231790	NM_000249.3	713	Aag/ag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165647	47165647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	13	526	0	ENST00000409792.3:c.479C>T	p.Thr160Ile	p.T160I	ENST00000409792	NM_014159.6	160	aCc/aTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249501	153249501	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	29	502	0	ENST00000281708.4:c.1277C>A	p.Ser426Ter	p.S426*	ENST00000281708	NM_033632.3	426	tCa/tAa																																																																														
LYN	4067	MSKCC	GRCh37	8	56854492	56854492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	20	508	0	ENST00000519728.1:c.74G>A	p.Arg25His	p.R25H	ENST00000519728	NM_002350.3	25	cGt/cAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914713	39914715	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0045320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	25	308	0	ENST00000378444.4:c.4647_4649del	p.Leu1550del	p.L1550del	ENST00000378444	NM_001123385.1	1549	ctTCTc/ctc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	322	516	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998544	100998544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	48	593	1	ENST00000325455.5:c.1258G>A	p.Gly420Arg	p.G420R	ENST00000325455	NM_001202474.3	420	Ggg/Agg																																																																														
RAD51B	5890	MSKCC	GRCh37	14	69061250	69061250	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	98	119	0	ENST00000487270.1:c.1085A>G	p.Glu362Gly	p.E362G	ENST00000487270	NM_133509.3	362	gAa/gGa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675570	30675570	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	370	594	0	ENST00000376406.3:c.2786A>C	p.Asp929Ala	p.D929A	ENST00000376406	NM_014641.2	929	gAt/gCt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151835938	151835938	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	284	353	0	ENST00000262189.6:c.14586del	p.Phe4862LeufsTer43	p.F4862Lfs*43	ENST00000262189	NM_170606.2	4862	ttT/tt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	14	219	0	ENST00000349496.5:c.98C>A	p.Ser33Tyr	p.S33Y	ENST00000349496	NM_001904.3	33	tCt/tAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043407	180043407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	220	442	0	ENST00000261937.6:c.3179G>A	p.Arg1060Gln	p.R1060Q	ENST00000261937	NM_182925.4	1060	cGg/cAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874980	151874980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	73	147	1	ENST00000262189.6:c.7558G>A	p.Val2520Ile	p.V2520I	ENST00000262189	NM_170606.2	2520	Gta/Ata																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0045344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	68	284	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
APC	324	MSKCC	GRCh37	5	112174490	112174493	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-	rs1267727476		P-0045344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	45	212	0	ENST00000257430.4:c.3202_3205del	p.Ser1068GlyfsTer57	p.S1068Gfs*57	ENST00000257430	NM_000038.5	1067	CAATca/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	143	556	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	119	348	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																														
STAT3	6774	MSKCC	GRCh37	17	40500453	40500453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	110	334	0	ENST00000264657.5:c.82A>G	p.Met28Val	p.M28V	ENST00000264657	NM_139276.2	28	Atg/Gtg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79952308	79952308	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	58	290	0	ENST00000265081.6:c.316C>T	p.Gln106Ter	p.Q106*	ENST00000265081	NM_002439.4	106	Caa/Taa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	26	616	0	ENST00000347630.2:c.259T>G	p.Tyr87Asp	p.Y87D	ENST00000347630	NM_001007230.1	87	Tac/Gac																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0009399-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			407	147	348	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150022928	150022928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009399-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			308	153	384	0	ENST00000253339.5:c.335C>T	p.Ala112Val	p.A112V	ENST00000253339		112	gCt/gTt																																																																														
CDH1	999	MSKCC	GRCh37	16	68835662	68835662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009399-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			425	237	701	0	ENST00000261769.5:c.253G>T	p.Val85Phe	p.V85F	ENST00000261769	NM_004360.3	85	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009399-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			22	538	945	0	ENST00000269305.4:c.309C>G	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taG																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035999-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			642	156	618	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035999-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			252	127	230	0	ENST00000379607.5:c.38G>A	p.Arg13His	p.R13H	ENST00000379607	NM_001412.3	13	cGc/cAc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123171431	123171431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035999-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			292	39	235	0	ENST00000218089.9:c.343C>G	p.Leu115Val	p.L115V	ENST00000218089	NM_001042749.1	115	Ctt/Gtt																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29107969	29107969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035999-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			702	51	478	0	ENST00000328354.6:c.720G>T	p.Arg240Ser	p.R240S	ENST00000328354	NM_007194.3	240	agG/agT																																																																														
MTOR	2475	MSKCC	GRCh37	1	11291075	11291075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	169	578	0	ENST00000361445.4:c.2686C>T	p.Pro896Ser	p.P896S	ENST00000361445	NM_004958.3	896	Cct/Tct																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	460	634	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
MSI1	4440	MSKCC	GRCh37	12	120802537	120802537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	203	735	0	ENST00000257552.2:c.289C>T	p.Pro97Ser	p.P97S	ENST00000257552	NM_002442.3	97	Cct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910431	32910431	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	146	343	0	ENST00000380152.3:c.1939T>G	p.Cys647Gly	p.C647G	ENST00000380152		647	Tgt/Ggt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639302	3639302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	223	937	1	ENST00000294008.3:c.4337C>T	p.Thr1446Ile	p.T1446I	ENST00000294008	NM_032444.2	1446	aCc/aTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923479	9923479	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	127	522	0	ENST00000330684.3:c.1808A>G	p.Lys603Arg	p.K603R	ENST00000330684	NM_001134407.1	603	aAa/aGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274265	10274266	+	start_lost	Translation_Start_Site	DNP	CC	CC	TT			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	40	392	0	ENST00000330684.3:c.3_4delinsAA	p.MetGly1_?2	p.MG1_?2	ENST00000330684	NM_001134407.1	1	atGGgc/atAAgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351926	89351926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	258	1161	0	ENST00000301030.4:c.1024C>T	p.Pro342Ser	p.P342S	ENST00000301030	NM_001256183.1	342	Ccc/Tcc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144102	11144102	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	237	911	0	ENST00000344626.4:c.3683T>G	p.Val1228Gly	p.V1228G	ENST00000344626	NM_003072.3	1228	gTg/gGg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376236	15376236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	207	715	1	ENST00000263377.2:c.778C>T	p.Pro260Ser	p.P260S	ENST00000263377	NM_058243.2	260	Cca/Tca																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52729019	52729019	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	280	699	0	ENST00000322088.6:c.1711C>T	p.Gln571Ter	p.Q571*	ENST00000322088	NM_014225.5	571	Cag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248674	212248674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	118	510	0	ENST00000342788.4:c.3593C>G	p.Ala1198Gly	p.A1198G	ENST00000342788	NM_005235.2	1198	gCc/gGc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561124	9561124	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	96	425	0	ENST00000353224.5:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000353224	NM_177990.2	220	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710658	40710658	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	109	485	0	ENST00000373198.4:c.4194-1G>A		p.X1398_splice	ENST00000373198	NM_133170.3	1398																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096114	71096114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	126	394	0	ENST00000318789.4:c.643C>T	p.Pro215Ser	p.P215S	ENST00000318789	NM_032682.5	215	Ccc/Tcc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156102	106156102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	108	341	0	ENST00000380013.4:c.1003C>T	p.Pro335Ser	p.P335S	ENST00000380013	NM_001127208.2	335	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	89	336	1				ENST00000310581	NM_198253.2																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38950585	38950585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	139	451	0	ENST00000357387.3:c.3365C>T	p.Ser1122Phe	p.S1122F	ENST00000357387	NM_152756.3	1122	tCt/tTt																																																																														
APC	324	MSKCC	GRCh37	5	112177692	112177692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	122	320	0	ENST00000257430.4:c.6401C>T	p.Ser2134Phe	p.S2134F	ENST00000257430	NM_000038.5	2134	tCc/tTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169206	32169206	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	207	916	0	ENST00000375023.3:c.3827A>C	p.Glu1276Ala	p.E1276A	ENST00000375023	NM_004557.3	1276	gAg/gCg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69000042	69000042	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	180	543	0	ENST00000288368.4:c.2111G>A	p.Arg704Lys	p.R704K	ENST00000288368	NM_024870.2	704	aGa/aAa																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5534962	5534962	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	117	583	0	ENST00000397747.3:c.273A>C	p.Gln91His	p.Q91H	ENST00000397747	NM_025239.3	91	caA/caC																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460420	8460420	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	111	291	0	ENST00000356435.5:c.3866T>G	p.Leu1289Arg	p.L1289R	ENST00000356435		1289	cTt/cGt																																																																														
SYK	6850	MSKCC	GRCh37	9	93640026	93640026	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	77	331	1	ENST00000375746.1:c.1355A>C	p.Glu452Ala	p.E452A	ENST00000375746	NM_001174167.1	452	gAa/gCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	222	439	2				ENST00000310581	NM_198253.2																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11123705	11123705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	58	620	0	ENST00000344626.4:c.2355G>C	p.Lys785Asn	p.K785N	ENST00000344626	NM_003072.3	785	aaG/aaC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	24	515	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29107910	29107910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	112	475	0	ENST00000328354.6:c.779C>T	p.Ser260Leu	p.S260L	ENST00000328354	NM_007194.3	260	tCa/tTa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866444	37866444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	777	856	0	ENST00000269571.5:c.749C>T	p.Ser250Phe	p.S250F	ENST00000269571		250	tCt/tTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1343	56	591	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158626	26158626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	102	273	0	ENST00000289316.2:c.229G>A	p.Glu77Lys	p.E77K	ENST00000289316	NM_138720.2	77	Gag/Aag																																																																														
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	133	742	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112175945	112175945	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	22	277	0	ENST00000257430.4:c.4654G>T	p.Glu1552Ter	p.E1552*	ENST00000257430	NM_000038.5	1552	Gag/Tag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	163	239	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216125	7216125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	41	403	1	ENST00000380728.2:c.934C>T	p.Arg312Trp	p.R312W	ENST00000380728		312	Cgg/Tgg																																																																														
NBN	4683	MSKCC	GRCh37	8	90965728	90965728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	45	288	0	ENST00000265433.3:c.1589C>A	p.Ser530Tyr	p.S530Y	ENST00000265433	NM_002485.4	530	tCt/tAt																																																																														
CIC	23152	MSKCC	GRCh37	19	42795066	42795066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	101	909	0	ENST00000575354.2:c.2146C>T	p.Arg716Trp	p.R716W	ENST00000575354	NM_015125.3	716	Cgg/Tgg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115252327	115252327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	130	351	0	ENST00000369535.4:c.313G>C	p.Asp105His	p.D105H	ENST00000369535	NM_002524.4	105	Gac/Cac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373322	118373322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	127	457	0	ENST00000534358.1:c.6715C>G	p.Leu2239Val	p.L2239V	ENST00000534358	NM_005933.3	2239	Ctt/Gtt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992171	72992171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	227	665	0	ENST00000268489.5:c.1874C>T	p.Ser625Phe	p.S625F	ENST00000268489	NM_006885.3	625	tCc/tTc																																																																														
ATM	472	MSKCC	GRCh37	11	108202762	108202762	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	91	350	0	ENST00000278616.4:c.7786G>A	p.Glu2596Lys	p.E2596K	ENST00000278616	NM_000051.3	2596	Gag/Aag																																																																														
RHOA	387	MSKCC	GRCh37	3	49412929	49412929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	130	742	1	ENST00000418115.1:c.94G>A	p.Glu32Lys	p.E32K	ENST00000418115	NM_001664.2	32	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991481	72991481	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	276	757	1	ENST00000268489.5:c.2564C>A	p.Ser855Ter	p.S855*	ENST00000268489	NM_006885.3	855	tCa/tAa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100212	30100212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	149	449	0	ENST00000331968.5:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000331968	NM_002742.2	470	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720711	89720711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	31	125	0	ENST00000371953.3:c.862G>C	p.Glu288Gln	p.E288Q	ENST00000371953	NM_000314.4	288	Gaa/Caa																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981641	101981641	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	22	91	0	ENST00000282441.5:c.62C>G	p.Ser21Trp	p.S21W	ENST00000282441	NM_001130145.2	21	tCg/tGg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102196060	102196060	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	103	298	0	ENST00000263464.3:c.820G>C	p.Glu274Gln	p.E274Q	ENST00000263464	NM_001165.4	274	Gag/Cag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373830	118373830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	99	288	0	ENST00000534358.1:c.7223C>G	p.Ser2408Cys	p.S2408C	ENST00000534358	NM_005933.3	2408	tCt/tGt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623777	28623777	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	113	540	0	ENST00000241453.7:c.877G>C	p.Glu293Gln	p.E293Q	ENST00000241453	NM_004119.2	293	Gag/Cag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32905104	32905104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	106	348	0	ENST00000380152.3:c.730G>C	p.Asp244His	p.D244H	ENST00000380152		244	Gat/Cat																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134335	41134335	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	155	473	0	ENST00000379561.5:c.1293G>C	p.Met431Ile	p.M431I	ENST00000379561	NM_002015.3	431	atG/atC																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436825	110436825	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	68	725	0	ENST00000375856.3:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000375856	NM_003749.2	526	Gag/Cag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66737032	66737032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	144	427	0	ENST00000307102.5:c.555G>C	p.Lys185Asn	p.K185N	ENST00000307102	NM_002755.3	185	aaG/aaC																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2636800	2636800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	251	708	0	ENST00000342085.4:c.1249C>G	p.His417Asp	p.H417D	ENST00000342085	NM_002613.4	417	Cac/Gac																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640024	3640024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	185	857	0	ENST00000294008.3:c.3615G>C	p.Gln1205His	p.Q1205H	ENST00000294008	NM_032444.2	1205	caG/caC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992384	72992384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	306	866	0	ENST00000268489.5:c.1661C>T	p.Ser554Phe	p.S554F	ENST00000268489	NM_006885.3	554	tCt/tTt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348173	89348173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	65	841	0	ENST00000301030.4:c.4777G>C	p.Glu1593Gln	p.E1593Q	ENST00000301030	NM_001256183.1	1593	Gag/Cag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89839793	89839793	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	259	747	0	ENST00000389301.3:c.1901-1G>C		p.X634_splice	ENST00000389301	NM_000135.2	634																																																																															
TP53	7157	MSKCC	GRCh37	17	7579340	7579340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	176	755	0	ENST00000269305.4:c.347C>G	p.Ser116Cys	p.S116C	ENST00000269305	NM_001126112.2	116	tCt/tGt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965012	15965012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	109	546	0	ENST00000268712.3:c.5584G>T	p.Glu1862Ter	p.E1862*	ENST00000268712	NM_006311.3	1862	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29541565	29541565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	64	424	0	ENST00000358273.4:c.1489G>T	p.Val497Leu	p.V497L	ENST00000358273	NM_001042492.2	497	Gtg/Ttg																																																																														
NF1	4763	MSKCC	GRCh37	17	29552123	29552123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	19	202	0	ENST00000358273.4:c.1856G>A	p.Arg619Lys	p.R619K	ENST00000358273	NM_001042492.2	619	aGa/aAa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534323	63534323	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	172	802	0	ENST00000307078.5:c.1198G>A	p.Glu400Lys	p.E400K	ENST00000307078	NM_004655.3	400	Gag/Aag																																																																														
YES1	7525	MSKCC	GRCh37	18	736937	736937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	100	498	0	ENST00000314574.4:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000314574	NM_005433.3	388	Gaa/Aaa																																																																														
YES1	7525	MSKCC	GRCh37	18	743035	743035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	55	628	0	ENST00000314574.4:c.943G>C	p.Glu315Gln	p.E315Q	ENST00000314574	NM_005433.3	315	Gaa/Caa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56363704	56363704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	38	283	0	ENST00000348428.3:c.483C>G	p.Phe161Leu	p.F161L	ENST00000348428	NM_006785.3	161	ttC/ttG																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144122	11144122	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	315	805	0	ENST00000344626.4:c.3703G>C	p.Asp1235His	p.D1235H	ENST00000344626	NM_003072.3	1235	Gac/Cac																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140146	50140146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	396	720	0	ENST00000246792.3:c.279G>C	p.Met93Ile	p.M93I	ENST00000246792	NM_006270.3	93	atG/atC																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25468144	25468144	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	197	837	0	ENST00000264709.3:c.1532G>C	p.Gly511Ala	p.G511A	ENST00000264709	NM_175629.2	511	gGa/gCa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010568	48010568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	202	561	1	ENST00000234420.5:c.196C>T	p.Pro66Ser	p.P66S	ENST00000234420	NM_000179.2	66	Ccg/Tcg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99203966	99203966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	40	405	0	ENST00000074304.5:c.2829G>C	p.Met943Ile	p.M943I	ENST00000074304	NM_001134224.1	943	atG/atC																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273139	198273139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	243	589	0	ENST00000335508.6:c.1071G>C	p.Lys357Asn	p.K357N	ENST00000335508	NM_012433.2	357	aaG/aaC																																																																														
BARD1	580	MSKCC	GRCh37	2	215674278	215674278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	44	588	0	ENST00000260947.4:c.16C>A	p.Gln6Lys	p.Q6K	ENST00000260947	NM_000465.2	6	Cag/Aag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660838	227660838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	55	610	0	ENST00000305123.5:c.2617C>T	p.Arg873Trp	p.R873W	ENST00000305123	NM_005544.2	873	Cgg/Tgg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265016	46265016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	141	530	0	ENST00000371998.3:c.1886C>G	p.Ser629Cys	p.S629C	ENST00000371998		629	tCt/tGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125569	47125569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	107	418	0	ENST00000409792.3:c.5701G>A	p.Glu1901Lys	p.E1901K	ENST00000409792	NM_014159.6	1901	Gaa/Aaa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143067065	143067065	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	90	423	0	ENST00000262992.4:c.1648G>C	p.Glu550Gln	p.E550Q	ENST00000262992	NM_001101669.1	550	Gaa/Caa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38958612	38958612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	43	248	0	ENST00000357387.3:c.2353C>T	p.His785Tyr	p.H785Y	ENST00000357387	NM_152756.3	785	Cat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112174650	112174650	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	113	378	0	ENST00000257430.4:c.3359G>C	p.Gly1120Ala	p.G1120A	ENST00000257430	NM_000038.5	1120	gGa/gCa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131930725	131930725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	140	369	0	ENST00000265335.6:c.1958C>T	p.Ser653Leu	p.S653L	ENST00000265335		653	tCa/tTa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514394	149514394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	140	623	0	ENST00000261799.4:c.550G>C	p.Glu184Gln	p.E184Q	ENST00000261799	NM_002609.3	184	Gag/Cag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679797	30679797	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	112	556	0	ENST00000376406.3:c.1922C>G	p.Ser641Ter	p.S641*	ENST00000376406	NM_014641.2	641	tCa/tGa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652023	36652023	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	234	827	0	ENST00000244741.5:c.145T>C	p.Trp49Arg	p.W49R	ENST00000244741	NM_000389.4	49	Tgg/Cgg																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790729	89790729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	68	828	1	ENST00000336032.3:c.116C>T	p.Pro39Leu	p.P39L	ENST00000336032	NM_006813.2	39	cCg/cTg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026467	6026467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	60	192	0	ENST00000265849.7:c.1929G>C	p.Gln643His	p.Q643H	ENST00000265849	NM_000535.5	643	caG/caC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874923	151874923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	77	317	0	ENST00000262189.6:c.7615C>A	p.Gln2539Lys	p.Q2539K	ENST00000262189	NM_170606.2	2539	Cag/Aag																																																																														
LYN	4067	MSKCC	GRCh37	8	56866422	56866422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	112	586	0	ENST00000519728.1:c.669G>C	p.Glu223Asp	p.E223D	ENST00000519728	NM_002350.3	223	gaG/gaC																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080239	5080239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	62	232	0	ENST00000381652.3:c.2142G>C	p.Glu714Asp	p.E714D	ENST00000381652	NM_004972.3	714	gaG/gaC																																																																														
TEK	7010	MSKCC	GRCh37	9	27197356	27197356	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	123	581	0	ENST00000380036.4:c.1668G>C	p.Gln556His	p.Q556H	ENST00000380036	NM_000459.3	556	caG/caC																																																																														
TSC1	7248	MSKCC	GRCh37	9	135776149	135776149	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	262	450	0	ENST00000298552.3:c.2578G>T	p.Glu860Ter	p.E860*	ENST00000298552	NM_001162426.1	860	Gag/Tag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395206	139395206	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	82	894	0	ENST00000277541.6:c.5732C>G	p.Ser1911Cys	p.S1911C	ENST00000277541	NM_017617.3	1911	tCc/tGc																																																																														
MED12	9968	MSKCC	GRCh37	X	70347754	70347754	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	33	230	0	ENST00000374080.3:c.2993C>G	p.Ser998Ter	p.S998*	ENST00000374080		998	tCa/tGa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200282	123200283	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	121	242	0	ENST00000218089.9:c.2264dup	p.Glu756GlyfsTer29	p.E756Gfs*29	ENST00000218089	NM_001042749.1	754	aca/acAa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	496	618	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	394	631	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681074	117681077	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0045226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	138	554	0	ENST00000368508.3:c.3543_3546delAAGA	p.Arg1182LeufsTer60	p.R1182Lfs*60	ENST00000368508	NM_002944.2	1181	gaAAGA/ga																																																																														
RET	5979	MSKCC	GRCh37	10	43609006	43609006	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	171	718	0	ENST00000355710.3:c.1762G>A	p.Gly588Ser	p.G588S	ENST00000355710	NM_020975.4	588	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	237	471	0	ENST00000269305.4:c.734G>C	p.Gly245Ala	p.G245A	ENST00000269305	NM_001126112.2	245	gGc/gCc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0045233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	231	492	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29546090	29546091	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0045233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	347	421	1	ENST00000358273.4:c.1595_1596delinsCT	p.Leu532Pro	p.L532P	ENST00000358273	NM_001042492.2	532	cTG/cCT																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056647	26056647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	60	145	0	ENST00000343677.2:c.10A>T	p.Thr4Ser	p.T4S	ENST00000343677	NM_005319.3	4	Act/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	50	768	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0045238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	253	914	0	ENST00000269305.4:c.394A>T	p.Lys132Ter	p.K132*	ENST00000269305	NM_001126112.2	132	Aag/Tag																																																																														
MGA	23269	MSKCC	GRCh37	15	42058948	42058948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144386608		P-0045238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	77	418	1	ENST00000219905.7:c.8668G>A	p.Val2890Ile	p.V2890I	ENST00000219905	NM_001164273.1	2890	Gtt/Att																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	173	381	0				ENST00000310581	NM_198253.2																																																																																
NEGR1	257194	MSKCC	GRCh37	1	72400902	72400902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	88	279	0	ENST00000357731.5:c.269G>A	p.Arg90Gln	p.R90Q	ENST00000357731	NM_173808.2	90	cGa/cAa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073562	8073562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	102	377	0	ENST00000377482.5:c.1097G>A	p.Arg366Lys	p.R366K	ENST00000377482	NM_018948.3	366	aGa/aAa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639169	3639169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	169	873	0	ENST00000294008.3:c.4470G>C	p.Glu1490Asp	p.E1490D	ENST00000294008	NM_032444.2	1490	gaG/gaC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827295	72827295	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	118	698	0	ENST00000268489.5:c.9286C>G	p.Gln3096Glu	p.Q3096E	ENST00000268489	NM_006885.3	3096	Cag/Gag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829442	72829442	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0045239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	100	630	0	ENST00000268489.5:c.7139C>G	p.Ser2380Ter	p.S2380*	ENST00000268489	NM_006885.3	2380	tCa/tGa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829754	72829754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	109	683	0	ENST00000268489.5:c.6827C>T	p.Ser2276Phe	p.S2276F	ENST00000268489	NM_006885.3	2276	tCt/tTt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56414755	56414755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	187	624	0	ENST00000348428.3:c.2156G>C	p.Arg719Pro	p.R719P	ENST00000348428	NM_006785.3	719	cGa/cCa																																																																														
AKT2	208	MSKCC	GRCh37	19	40741948	40741948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	142	927	1	ENST00000392038.2:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000392038	NM_001626.4	342	Gag/Aag																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205804	128205804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	134	601	0	ENST00000341105.2:c.71C>T	p.Ser24Leu	p.S24L	ENST00000341105	NM_032638.4	24	tCa/tTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928291	178928291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	94	489	0	ENST00000263967.3:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000263967	NM_006218.2	493	Gaa/Aaa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409473	80409473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	113	426	0	ENST00000286548.4:c.641G>T	p.Arg214Ile	p.R214I	ENST00000286548	NM_002072.3	214	aGa/aTa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409509	80409509	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0045239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	158	579	0	ENST00000286548.4:c.606-1G>C		p.X202_splice	ENST00000286548	NM_002072.3	202																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	28	401	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	27	328	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0045240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	28	618	0	ENST00000269305.4:c.559+1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	11	317	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0045243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	135	667	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	87	644	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112602	115112602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			678	148	902	1	ENST00000257566.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000257566	NM_016569.3	380	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480410	56480410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	82	568	0	ENST00000267101.3:c.517G>A	p.Glu173Lys	p.E173K	ENST00000267101	NM_001982.3	173	Gag/Aag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727571	66727571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	62	352	0	ENST00000307102.5:c.287G>A	p.Arg96Lys	p.R96K	ENST00000307102	NM_002755.3	96	aGa/aAa																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112745494	112745494	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	60	492	0	ENST00000369452.4:c.812A>G	p.Asn271Ser	p.N271S	ENST00000369452	NM_007373.3	271	aAt/aGt																																																																														
CDH1	999	MSKCC	GRCh37	16	68845698	68845698	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	96	659	0	ENST00000261769.5:c.944A>G	p.Asn315Ser	p.N315S	ENST00000261769	NM_004360.3	315	aAt/aGt																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27777862	27777862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	35	299	0	ENST00000369163.2:c.11C>T	p.Thr4Met	p.T4M	ENST00000369163	NM_003536.2	4	aCg/aTg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090669	71090669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	45	265	0	ENST00000318789.4:c.679G>C	p.Glu227Gln	p.E227Q	ENST00000318789	NM_032682.5	227	Gaa/Caa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32171648	32171648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	97	673	1	ENST00000375023.3:c.3130G>A	p.Glu1044Lys	p.E1044K	ENST00000375023	NM_004557.3	1044	Gag/Aag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123210199	123210199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	58	483	0	ENST00000218089.9:c.2551G>A	p.Glu851Lys	p.E851K	ENST00000218089	NM_001042749.1	851	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0043102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			852	249	700	1	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACT			P-0043102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1433	471	740	0	ENST00000275493.2:c.2310_2311insTAC	p.Asp770_Asn771insTyr	p.D770_N771insY	ENST00000275493	NM_005228.3	770	gac/gACTac																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265477	198265477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043102-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	94	466	0	ENST00000335508.6:c.2680G>A	p.Asp894Asn	p.D894N	ENST00000335508	NM_012433.2	894	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	270	798	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
AKT2	208	MSKCC	GRCh37	19	40743901	40743901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	134	722	2	ENST00000392038.2:c.806G>A	p.Arg269Gln	p.R269Q	ENST00000392038	NM_001626.4	269	cGg/cAg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728671	190728672	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0044345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	22	382	0	ENST00000441310.2:c.2064_2065dup	p.Arg689LysfsTer16	p.R689Kfs*16	ENST00000441310	NM_000534.4	687	gaa/gAAaa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728730	190728730	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	18	301	0	ENST00000441310.2:c.2122del	p.Ile708Ter	p.I708*	ENST00000441310	NM_000534.4	706	ttA/tt																																																																														
TET2	54790	MSKCC	GRCh37	4	106194038	106194038	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	71	272	0	ENST00000380013.4:c.4500A>T	p.Lys1500Asn	p.K1500N	ENST00000380013	NM_001127208.2	1500	aaA/aaT																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220334	98220334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	96	437	0	ENST00000331920.6:c.3129C>G	p.Cys1043Trp	p.C1043W	ENST00000331920	NM_000264.3	1043	tgC/tgG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0044694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	131	400	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	444	519	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81954830	81954830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	128	423	0	ENST00000359376.3:c.2263G>A	p.Val755Ile	p.V755I	ENST00000359376	NM_002661.3	755	Gtc/Atc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923045	44923048	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0044694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	191	500	0	ENST00000377967.4:c.1909_1912del	p.Ser637ThrfsTer53	p.S637Tfs*53	ENST00000377967	NM_021140.2	636	CTATct/ct																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981764	201981768	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGA	CCAGA	-			P-0044694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			586	233	653	0	ENST00000359651.3:c.479_483del		p.X160_splice	ENST00000359651		160																																																																															
ELF3	1999	MSKCC	GRCh37	1	201984373	201984374	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCC			P-0044694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			665	312	612	0	ENST00000359651.3:c.1042_1045dup	p.Arg349ProfsTer123	p.R349Pfs*123	ENST00000359651		346	-/GGCC																																																																														
PMS1	5378	MSKCC	GRCh37	2	190732609	190732610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATCCTCGTCTTACAGCGAATG			P-0044694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	64	352	0	ENST00000441310.2:c.2429_2450dup	p.Phe818SerfsTer20	p.F818Sfs*20	ENST00000441310	NM_000534.4	809	-/GATCCTCGTCTTACAGCGAATG																																																																														
TSC1	7248	MSKCC	GRCh37	9	135802682	135802682	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044694-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			94	133	263	0	ENST00000298552.3:c.116del	p.Pro39LeufsTer4	p.P39Lfs*4	ENST00000298552	NM_001162426.1	39	cCt/ct																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0044943-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	126	602	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20159743	20159743	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044943-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	117	620	0	ENST00000379607.5:c.16G>A	p.Gly6Ser	p.G6S	ENST00000379607	NM_001412.3	6	Ggt/Agt																																																																														
CBFB	865	MSKCC	GRCh37	16	67132612	67132612	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0044943-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	111	602	0	ENST00000412916.2:c.496-1G>A		p.X166_splice	ENST00000412916		166																																																																															
RBM10	8241	MSKCC	GRCh37	X	47034471	47034471	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045019-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			628	80	685	0	ENST00000329236.7:c.325C>T	p.Arg109Ter	p.R109*	ENST00000329236	NM_001204466.1	109	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879598	37879599	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCG			P-0045019-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	177	806	0	ENST00000269571.5:c.1973_1974insCCG	p.Val658_Val659insArg	p.V658_V659insR	ENST00000269571		658	gtg/gtCCGg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591900	48591900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045019-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	46	389	1	ENST00000342988.3:c.1063G>T	p.Asp355Tyr	p.D355Y	ENST00000342988	NM_005359.5	355	Gac/Tac																																																																														
NBN	4683	MSKCC	GRCh37	8	90983475	90983475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045019-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	41	227	0	ENST00000265433.3:c.628G>A	p.Val210Ile	p.V210I	ENST00000265433	NM_002485.4	210	Gtt/Att																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	420	330	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465650	8465650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	29	159	0	ENST00000356435.5:c.3530G>A	p.Arg1177His	p.R1177H	ENST00000356435		1177	cGc/cAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119823	70119823	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	280	349	1	ENST00000245479.2:c.825del	p.Ile275MetfsTer4	p.I275Mfs*4	ENST00000245479	NM_000346.3	275	atC/at																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243615	41243615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	71	320	0	ENST00000357654.3:c.3933C>A	p.Asn1311Lys	p.N1311K	ENST00000357654	NM_007294.3	1311	aaC/aaA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228550	36228550	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	107	336	0	ENST00000222270.7:c.7564G>C	p.Asp2522His	p.D2522H	ENST00000222270	NM_014727.1	2522	Gac/Cac																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12043182	12043199	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAAAGTATAAAGAGCTTC	CAAAGTATAAAGAGCTTC	TT			P-0045040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	28	116	1	ENST00000353533.5:c.1067_1084delinsTT	p.Pro356LeufsTer2	p.P356Lfs*2	ENST00000353533	NM_003010.3	356	cCAAAGTATAAAGAGCTTCtg/cTTtg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6414400	6414400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	67	142	0	ENST00000356142.4:c.34G>A	p.Gly12Arg	p.G12R	ENST00000356142	NM_018890.3	12	Gga/Aga																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796894	78796894	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	222	453	0	ENST00000306801.3:c.1007T>A	p.Leu336His	p.L336H	ENST00000306801	NM_020761.2	336	cTc/cAc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123182927	123182927	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	39	145	0	ENST00000218089.9:c.892C>T	p.Arg298Cys	p.R298C	ENST00000218089	NM_001042749.1	298	Cgt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0045104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	18	460	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	24	252	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	13	427	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	296	629	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637326	47637326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	159	712	0	ENST00000233146.2:c.460G>A	p.Ala154Thr	p.A154T	ENST00000233146	NM_000251.2	154	Gca/Aca																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783334	9783334	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	117	530	0	ENST00000377346.4:c.2578A>C	p.Lys860Gln	p.K860Q	ENST00000377346	NM_005026.3	860	Aag/Cag																																																																														
SESN3	143686	MSKCC	GRCh37	11	94922977	94922977	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	98	403	1	ENST00000536441.1:c.491A>G	p.His164Arg	p.H164R	ENST00000536441	NM_144665.3	164	cAt/cGt																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504096	123504096	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	99	418	1	ENST00000371139.4:c.272A>C	p.Asp91Ala	p.D91A	ENST00000371139	NM_001114937.2	91	gAt/gCt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0045106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	54	458	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0045106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	52	286	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39278343	39278343	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	33	545	0	ENST00000402219.2:c.806T>A	p.Met269Lys	p.M269K	ENST00000402219	NM_005633.3	269	aTg/aAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685289	89685290	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0045106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	21	187	0	ENST00000371953.3:c.187_188del	p.Asn63ProfsTer10	p.N63Pfs*10	ENST00000371953	NM_000314.4	62	AAa/a																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589151	67589152	+	inframe_insertion	In_Frame_Ins	INS	-	-	AATCAA			P-0045106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	17	249	0	ENST00000274335.5:c.1143_1148dup	p.Lys382_Ile383dup	p.K382_I383dup	ENST00000274335		382	tta/ttAATCAAa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0045107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	189	528	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005843	69005843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	100	327	0	ENST00000288368.4:c.2254G>A	p.Asp752Asn	p.D752N	ENST00000288368	NM_024870.2	752	Gat/Aat																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441973	52441973	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0045107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	187	383	1	ENST00000460680.1:c.375+1G>A		p.X125_splice	ENST00000460680	NM_004656.3	125																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	35	442	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	143	770	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
RB1	5925	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	34	347	0	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426384	49426384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	140	1043	0	ENST00000301067.7:c.12104C>T	p.Ser4035Leu	p.S4035L	ENST00000301067	NM_003482.3	4035	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434732	49434732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	102	1082	1	ENST00000301067.7:c.6821C>T	p.Ser2274Leu	p.S2274L	ENST00000301067	NM_003482.3	2274	tCg/tTg																																																																														
BBC3	27113	MSKCC	GRCh37	19	47730006	47730006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	35	625	0	ENST00000449228.1:c.383C>T	p.Ser128Leu	p.S128L	ENST00000449228	NM_001127240.2	128	tCa/tTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678559	88678559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	40	442	0	ENST00000360948.2:c.977G>A	p.Arg326His	p.R326H	ENST00000360948	NM_001012338.2	326	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108143494	108143494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	37	414	0	ENST00000278616.4:c.3199G>C	p.Asp1067His	p.D1067H	ENST00000278616	NM_000051.3	1067	Gac/Cac																																																																														
NF2	4771	MSKCC	GRCh37	22	30057329	30057329	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	56	385	1	ENST00000338641.4:c.810+1G>A		p.X270_splice	ENST00000338641	NM_000268.3	270																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432408	49432408	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	88	953	0	ENST00000301067.7:c.8731G>T	p.Glu2911Ter	p.E2911*	ENST00000301067	NM_003482.3	2911	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432543	49432543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	71	877	0	ENST00000301067.7:c.8596G>A	p.Glu2866Lys	p.E2866K	ENST00000301067	NM_003482.3	2866	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434129	49434129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	77	844	0	ENST00000301067.7:c.7424C>T	p.Pro2475Leu	p.P2475L	ENST00000301067	NM_003482.3	2475	cCt/cTt																																																																														
RB1	5925	MSKCC	GRCh37	13	48934189	48934189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	40	339	1	ENST00000267163.4:c.644C>T	p.Ser215Leu	p.S215L	ENST00000267163	NM_000321.2	215	tCa/tTa																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023403	33023403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	78	691	1	ENST00000300177.4:c.512C>T	p.Thr171Ile	p.T171I	ENST00000300177	NM_001191322.1	171	aCa/aTa																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217839	7217839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	68	632	0	ENST00000380728.2:c.172G>C	p.Glu58Gln	p.E58Q	ENST00000380728		58	Gag/Cag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16097838	16097838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	82	428	0	ENST00000268712.3:c.46G>A	p.Glu16Lys	p.E16K	ENST00000268712	NM_006311.3	16	Gaa/Aaa																																																																														
MSI2	124540	MSKCC	GRCh37	17	55334471	55334471	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	30	262	0	ENST00000284073.2:c.75C>G	p.Ile25Met	p.I25M	ENST00000284073	NM_138962.2	25	atC/atG																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296430	15296430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	98	1123	0	ENST00000263388.2:c.2012C>T	p.Ser671Phe	p.S671F	ENST00000263388	NM_000435.2	671	tCc/tTc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61711078	61711078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	50	360	0	ENST00000401558.2:c.2671G>A	p.Asp891Asn	p.D891N	ENST00000401558	NM_003400.3	891	Gat/Aat																																																																														
XPO1	7514	MSKCC	GRCh37	2	61712912	61712912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	22	290	0	ENST00000401558.2:c.2499G>A	p.Met833Ile	p.M833I	ENST00000401558	NM_003400.3	833	atG/atA																																																																														
XPO1	7514	MSKCC	GRCh37	2	61713016	61713016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	34	397	0	ENST00000401558.2:c.2395G>A	p.Glu799Lys	p.E799K	ENST00000401558	NM_003400.3	799	Gaa/Aaa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721199	61721199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	41	352	0	ENST00000401558.2:c.1075G>C	p.Glu359Gln	p.E359Q	ENST00000401558	NM_003400.3	359	Gaa/Caa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024044	31024044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	88	611	0	ENST00000375687.4:c.3529C>G	p.Leu1177Val	p.L1177V	ENST00000375687	NM_015338.5	1177	Ctt/Gtt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747127	40747127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	74	506	0	ENST00000373198.4:c.2955G>C	p.Glu985Asp	p.E985D	ENST00000373198	NM_133170.3	985	gaG/gaC																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968201	134968201	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201702941		P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	96	685	2	ENST00000398015.3:c.2714G>A	p.Arg905His	p.R905H	ENST00000398015	NM_004441.4	905	cGc/cAc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143129620	143129620	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	40	337	0	ENST00000262992.4:c.1030C>G	p.Leu344Val	p.L344V	ENST00000262992	NM_001101669.1	344	Cta/Gta																																																																														
MET	4233	MSKCC	GRCh37	7	116417487	116417487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	30	280	0	ENST00000397752.3:c.3304G>A	p.Gly1102Ser	p.G1102S	ENST00000397752	NM_000245.2	1102	Ggc/Agc																																																																														
BRAF	673	MSKCC	GRCh37	7	140507827	140507827	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	28	389	0	ENST00000288602.6:c.644C>G	p.Ser215Cys	p.S215C	ENST00000288602	NM_004333.4	215	tCc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	117	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581309	48581309	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	41	401	0	ENST00000342988.3:c.613G>T	p.Glu205Ter	p.E205*	ENST00000342988	NM_005359.5	205	Gag/Tag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940995	49940997	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0045137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	33	775	1	ENST00000296474.3:c.46_48del	p.Leu17del	p.L17del	ENST00000296474	NM_002447.2	16	CTG/-																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250782	26250782	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	29	422	0	ENST00000446824.2:c.52C>G	p.Arg18Gly	p.R18G	ENST00000446824	NM_021018.2	18	Cgc/Ggc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	158	357	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307013	65307013	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	135	274	0	ENST00000342505.4:c.2564T>C	p.Ile855Thr	p.I855T	ENST00000342505	NM_002227.2	855	aTt/aCt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967576	26967576	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	24	392	0	ENST00000381527.3:c.719A>T	p.Asp240Val	p.D240V	ENST00000381527	NM_001260.1	240	gAc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	27	325	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0045139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	37	707	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136841	2136841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	40	735	1	ENST00000219476.3:c.4958C>A	p.Ser1653Tyr	p.S1653Y	ENST00000219476	NM_000548.3	1653	tCc/tAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	104	262	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	106	677	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	99	515	0	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	99	515	0	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
ERG	2078	MSKCC	GRCh37	21	39763596	39763596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	36	214	0	ENST00000288319.7:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000288319	NM_182918.3	286	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992447	72992447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	68	626	0	ENST00000268489.5:c.1598C>T	p.Ser533Phe	p.S533F	ENST00000268489	NM_006885.3	533	tCc/tTc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609621	81609621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	46	346	0	ENST00000298171.2:c.1219C>T	p.Pro407Ser	p.P407S	ENST00000298171	NM_000369.2	407	Ccg/Tcg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	77	356	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	99	515	0	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
ATR	545	MSKCC	GRCh37	3	142212117	142212117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	51	289	0	ENST00000350721.4:c.5935G>A	p.Gly1979Ser	p.G1979S	ENST00000350721	NM_001184.3	1979	Ggt/Agt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988249	36988249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	42	474	0	ENST00000354822.5:c.404G>A	p.Arg135Lys	p.R135K	ENST00000354822	NM_001079668.2	135	aGg/aAg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714274	43714288	+	inframe_deletion	In_Frame_Del	DEL	GGAAACTTCAGTTTC	GGAAACTTCAGTTTC	-			P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	60	507	0	ENST00000382044.4:c.3865_3879del	p.Glu1289_Ser1293del	p.E1289_S1293del	ENST00000382044	NM_001141980.1	1289	GAAACTGAAGTTTCC/-																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33433410	33433410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	52	459	0	ENST00000335858.7:c.235C>A	p.Gln79Lys	p.Q79K	ENST00000335858	NM_133629.2	79	Cag/Aag																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264257	46264257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	35	263	0	ENST00000371998.3:c.1304G>T	p.Gly435Val	p.G435V	ENST00000371998		435	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0045143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	504	565	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MGA	23269	MSKCC	GRCh37	15	41988914	41988914	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	293	390	0	ENST00000219905.7:c.1706C>G	p.Ser569Ter	p.S569*	ENST00000219905	NM_001164273.1	569	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	415	611	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	189	363	5	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72863719	72863719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	315	443	0	ENST00000268489.5:c.3488C>A	p.Ala1163Asp	p.A1163D	ENST00000268489	NM_006885.3	1163	gCt/gAt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950443	68950443	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	214	343	0	ENST00000288368.4:c.755T>C	p.Leu252Ser	p.L252S	ENST00000288368	NM_024870.2	252	tTa/tCa																																																																														
MED12	9968	MSKCC	GRCh37	X	70349937	70349937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	441	313	0	ENST00000374080.3:c.3920T>C	p.Leu1307Pro	p.L1307P	ENST00000374080		1307	cTg/cCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0045148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	127	278	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175101	112175101	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	43	140	0	ENST00000257430.4:c.3814del	p.Ser1272GlnfsTer16	p.S1272Qfs*16	ENST00000257430	NM_000038.5	1270	tgT/tg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99179952	99179952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	294	629	0	ENST00000074304.5:c.1895C>T	p.Pro632Leu	p.P632L	ENST00000074304	NM_001134224.1	632	cCg/cTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117906	70117907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	120	494	0	ENST00000245479.2:c.376dup	p.Gln126ProfsTer126	p.Q126Pfs*126	ENST00000245479	NM_000346.3	125	gac/gaCc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989616	212989616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	98	201	0	ENST00000342788.4:c.95C>T	p.Thr32Met	p.T32M	ENST00000342788	NM_005235.2	32	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0045153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	857	667	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	72	159	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437614	52437614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	382	678	4	ENST00000460680.1:c.1547C>T	p.Pro516Leu	p.P516L	ENST00000460680	NM_004656.3	516	cCg/cTg																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99808294	99808294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	144	323	3	ENST00000280892.6:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000280892	NM_001130678.1	132	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	137	545	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	82	451	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	181	614	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	167	634	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	110	349	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65309857	65309857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	123	421	0	ENST00000342505.4:c.2293G>C	p.Glu765Gln	p.E765Q	ENST00000342505	NM_002227.2	765	Gag/Cag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243472	46243472	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	82	330	0	ENST00000334344.6:c.1825C>T	p.Gln609Ter	p.Q609*	ENST00000334344	NM_152641.2	609	Cag/Tag																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664804	138664804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	178	315	2	ENST00000330315.3:c.761C>T	p.Ser254Leu	p.S254L	ENST00000330315	NM_023067.3	254	tCg/tTg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061115	38061115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	66	405	0	ENST00000250448.2:c.874G>A	p.Glu292Lys	p.E292K	ENST00000250448	NM_004496.3	292	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212522509	212522509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	130	365	1	ENST00000342788.4:c.1916C>T	p.Thr639Met	p.T639M	ENST00000342788	NM_005235.2	639	aCg/aTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855787	45855787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	194	793	0	ENST00000391945.4:c.2023G>T	p.Gly675Cys	p.G675C	ENST00000391945	NM_000400.3	675	Ggc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446821	49446821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	120	594	0	ENST00000301067.7:c.989C>T	p.Ser330Leu	p.S330L	ENST00000301067	NM_003482.3	330	tCa/tTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023460	27023479	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGGGGCCTGGAGCCCTAC	GCGGGGGCCTGGAGCCCTAC	-			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	141	672	0	ENST00000324856.7:c.572_591del	p.Gly191AlafsTer202	p.G191Afs*202	ENST00000324856	NM_006015.4	189	gGCGGGGGCCTGGAGCCCTAC/g																																																																														
TET1	80312	MSKCC	GRCh37	10	70451262	70451262	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	212	649	0	ENST00000373644.4:c.6102G>C	p.Glu2034Asp	p.E2034D	ENST00000373644	NM_030625.2	2034	gaG/gaC																																																																														
CDK8	1024	MSKCC	GRCh37	13	26927896	26927896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	102	222	0	ENST00000381527.3:c.335G>A	p.Arg112Lys	p.R112K	ENST00000381527	NM_001260.1	112	aGa/aAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954229	32954229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	155	406	0	ENST00000380152.3:c.9203C>T	p.Ser3068Phe	p.S3068F	ENST00000380152		3068	tCt/tTt																																																																														
RB1	5925	MSKCC	GRCh37	13	48878185	48878185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	54	223	0	ENST00000267163.4:c.137G>C	p.Arg46Thr	p.R46T	ENST00000267163	NM_000321.2	46	aGg/aCg																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871761	35871761	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	172	562	1	ENST00000216797.5:c.745C>T	p.Gln249Ter	p.Q249*	ENST00000216797	NM_020529.2	249	Cag/Tag																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873685	35873705	+	inframe_deletion	In_Frame_Del	DEL	GCTCGAGGCGGATCTCCTGCA	GCTCGAGGCGGATCTCCTGCA	-			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	158	565	0	ENST00000216797.5:c.146_166del	p.Leu49_Glu55del	p.L49_E55del	ENST00000216797	NM_020529.2	49	cTGCAGGAGATCCGCCTCGAGCcg/ccg																																																																														
BLM	641	MSKCC	GRCh37	15	91310228	91310228	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	75	281	0	ENST00000355112.3:c.2282A>C	p.Lys761Thr	p.K761T	ENST00000355112	NM_000057.2	761	aAa/aCa																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348891	11348891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	282	414	1	ENST00000332029.2:c.445G>A	p.Glu149Lys	p.E149K	ENST00000332029	NM_003745.1	149	Gag/Aag																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641505	23641505	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	161	514	0	ENST00000261584.4:c.1970A>C	p.Glu657Ala	p.E657A	ENST00000261584	NM_024675.3	657	gAg/gCg																																																																														
MSI2	124540	MSKCC	GRCh37	17	55674249	55674249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	108	321	0	ENST00000284073.2:c.475G>A	p.Glu159Lys	p.E159K	ENST00000284073	NM_138962.2	159	Gag/Aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492792	56492810	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGATAATAGCTTTCTGT	TCTGATAATAGCTTTCTGT	-			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	125	543	0	ENST00000407977.2:c.129_147del	p.Gln44Ter	p.Q44*	ENST00000407977		43	gaACAGAAAGCTATTATCAGA/ga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11113725	11113725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	216	615	0	ENST00000344626.4:c.1833G>C	p.Gln611His	p.Q611H	ENST00000344626	NM_003072.3	611	caG/caC																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728700	190728700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	142	334	0	ENST00000441310.2:c.2088G>T	p.Met696Ile	p.M696I	ENST00000441310	NM_000534.4	696	atG/atT																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46275955	46275955	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	137	461	0	ENST00000371998.3:c.3391C>T	p.Gln1131Ter	p.Q1131*	ENST00000371998		1131	Caa/Taa																																																																														
EP300	2033	MSKCC	GRCh37	22	41513285	41513291	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTCAG	GCTTCAG	-			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	141	457	0	ENST00000263253.7:c.189_195del	p.Leu64GlnfsTer50	p.L64Qfs*50	ENST00000263253	NM_001429.3	63	caGCTTCAG/ca																																																																														
ATR	545	MSKCC	GRCh37	3	142224066	142224085	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTTTAGAGATGGTTCTGC	TCTTTTAGAGATGGTTCTGC	-			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	96	450	0	ENST00000350721.4:c.5092_5111del	p.Ala1698ThrfsTer4	p.A1698Tfs*4	ENST00000350721	NM_001184.3	1698	GCAGAACCATCTCTAAAAGAa/a																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951953	178951953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	93	324	0	ENST00000263967.3:c.3008C>T	p.Ser1003Leu	p.S1003L	ENST00000263967	NM_006218.2	1003	tCa/tTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247229	153247229	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	133	331	0	ENST00000281708.4:c.1573del	p.Val525CysfsTer31	p.V525Cfs*31	ENST00000281708	NM_033632.3	525	Gtg/tg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526307	31526307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	217	918	1	ENST00000344624.3:c.733C>G	p.Arg245Gly	p.R245G	ENST00000344624		245	Cgg/Ggg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202368	138202368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	125	726	1	ENST00000237289.4:c.2285G>T	p.Cys762Phe	p.C762F	ENST00000237289	NM_001270507.1	762	tGc/tTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528510	157528510	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	81	545	1	ENST00000346085.5:c.6235C>T	p.Gln2079Ter	p.Q2079*	ENST00000346085	NM_020732.3	2079	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874808	151874809	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	78	301	0	ENST00000262189.6:c.7729_7730delinsTT	p.Pro2577Leu	p.P2577L	ENST00000262189	NM_170606.2	2577	CCa/TTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391793	139391793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	194	900	0	ENST00000277541.6:c.6398C>T	p.Pro2133Leu	p.P2133L	ENST00000277541	NM_017617.3	2133	cCc/cTc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821577	32821595	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GCGAGAAGCTCAGCCATTT	GCGAGAAGCTCAGCCATTT	TAA			P-0045155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	211	863	2	ENST00000354258.4:c.-2_17delinsTTA		p.*1*	ENST00000354258	NM_000593.5																																																																																
ABL1	25	MSKCC	GRCh37	9	133738211	133738211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	515	539	1	ENST00000318560.5:c.611C>T	p.Thr204Met	p.T204M	ENST00000318560	NM_005157.4	204	aCg/aTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66218787	66218787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	24	214	0	ENST00000273854.3:c.2271G>T	p.Glu757Asp	p.E757D	ENST00000273854	NM_004439.5	757	gaG/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577494	7577505	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGACCTGGAGT	CTGACCTGGAGT	-			P-0045158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	167	593	0	ENST00000269305.4:c.776_782+5del		p.X259_splice	ENST00000269305	NM_001126112.2	259																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	110	294	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0045160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	83	763	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747137	40747137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	42	378	1	ENST00000373198.4:c.2945C>T	p.Pro982Leu	p.P982L	ENST00000373198	NM_133170.3	982	cCg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023203	27023222	+	frameshift_variant	Frame_Shift_Del	DEL	GAACGGGAACGCGGGCCCTA	GAACGGGAACGCGGGCCCTA	-			P-0045160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	38	198	0	ENST00000324856.7:c.310_329del	p.Asn104AlafsTer6	p.N104Afs*6	ENST00000324856	NM_006015.4	103	tcGAACGGGAACGCGGGCCCTAgg/tcgg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525943	148525944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	43	338	0	ENST00000320356.2:c.513dup	p.Val172CysfsTer11	p.V172Cfs*11	ENST00000320356	NM_004456.4	171	-/T																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435422	18435422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	130	214	0	ENST00000266497.5:c.407C>T	p.Ala136Val	p.A136V	ENST00000266497		136	gCt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0045161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	407	712	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
AXL	558	MSKCC	GRCh37	19	41748863	41748906	+	frameshift_variant	Frame_Shift_Del	DEL	GTGTCCTCATCTTGGCTCTCTTCCTTGTCCACCGGCGAAAGAAG	GTGTCCTCATCTTGGCTCTCTTCCTTGTCCACCGGCGAAAGAAG	-			P-0045161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	238	614	0	ENST00000301178.4:c.1389_1432del	p.Cys463Ter	p.C463*	ENST00000301178	NM_021913.4	463	tGTGTCCTCATCTTGGCTCTCTTCCTTGTCCACCGGCGAAAGAAG/t																																																																														
MET	4233	MSKCC	GRCh37	7	116381038	116381038	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	56	511	0	ENST00000397752.3:c.1660G>C	p.Gly554Arg	p.G554R	ENST00000397752	NM_000245.2	554	Ggg/Cgg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221226	1221226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	233	688	0	ENST00000326873.7:c.749C>T	p.Thr250Met	p.T250M	ENST00000326873	NM_000455.4	250	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	17	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286764	212286764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	20	312	0	ENST00000342788.4:c.2932G>T	p.Ala978Ser	p.A978S	ENST00000342788	NM_005235.2	978	Gct/Tct																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864721	57864721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	40	807	0	ENST00000228682.2:c.2198G>T	p.Gly733Val	p.G733V	ENST00000228682	NM_005269.2	733	gGg/gTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600336	10600336	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	27	570	0	ENST00000171111.5:c.1519C>G	p.Arg507Gly	p.R507G	ENST00000171111	NM_203500.1	507	Cga/Gga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030473	47030473	+	intron_variant	Intron	DEL	G	G	-			P-0045163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	36	955	0	ENST00000329236.7:c.201+1577del		p.*67*	ENST00000329236	NM_001204466.1																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	227	454	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72890221	72890221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	122	373	2	ENST00000325599.8:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000325599	NM_018130.2	154	cGa/cAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9523334	9523334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	157	453	0	ENST00000353224.5:c.1903G>A	p.Glu635Lys	p.E635K	ENST00000353224	NM_177990.2	635	Gaa/Aaa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950309	17950309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	253	709	0	ENST00000458235.1:c.1418C>T	p.Ser473Phe	p.S473F	ENST00000458235	NM_000215.3	473	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257158	16257158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	42	416	1	ENST00000375759.3:c.4423C>T	p.Arg1475Ter	p.R1475*	ENST00000375759	NM_015001.2	1475	Cga/Tga																																																																														
MYC	4609	MSKCC	GRCh37	8	128750695	128750695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	159	586	0	ENST00000377970.2:c.232C>T	p.Pro78Ser	p.P78S	ENST00000377970	NM_002467.4	78	Cct/Tct																																																																														
BLM	641	MSKCC	GRCh37	15	91306259	91306259	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	117	294	0	ENST00000355112.3:c.1946T>A	p.Phe649Tyr	p.F649Y	ENST00000355112	NM_000057.2	649	tTt/tAt																																																																														
MPL	4352	MSKCC	GRCh37	1	43804212	43804212	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	263	413	0	ENST00000372470.3:c.213-1G>A		p.X71_splice	ENST00000372470	NM_005373.2	71																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519347	137519347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	27	270	0	ENST00000367739.4:c.1291C>T	p.Pro431Ser	p.P431S	ENST00000367739	NM_000416.2	431	Ccc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980798	40980798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	252	523	0	ENST00000373198.4:c.1688C>T	p.Ser563Phe	p.S563F	ENST00000373198	NM_133170.3	563	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	119	403	0				ENST00000310581	NM_198253.2																																																																																
PDCD1	5133	MSKCC	GRCh37	2	242795069	242795069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	262	877	0	ENST00000334409.5:c.140G>A	p.Gly47Glu	p.G47E	ENST00000334409	NM_005018.2	47	gGg/gAg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652476	48652476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	125	872	0	ENST00000376670.3:c.1147C>T	p.Pro383Ser	p.P383S	ENST00000376670	NM_002049.3	383	Cct/Tct																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115261281	115261281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	309	459	0	ENST00000438362.2:c.2440C>T	p.Pro814Ser	p.P814S	ENST00000438362	NM_001242891.1	814	Cct/Tct																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64135641	64135641	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	294	806	1	ENST00000334205.4:c.1109A>T	p.His370Leu	p.H370L	ENST00000334205	NM_003942.2	370	cAc/cTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953941	32953941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	106	305	0	ENST00000380152.3:c.9008G>A	p.Gly3003Glu	p.G3003E	ENST00000380152		3003	gGa/gAa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785809	50785809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	65	350	0	ENST00000398568.2:c.799G>A	p.Val267Met	p.V267M	ENST00000398568	NM_001042412.1	267	Gtg/Atg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740873	58740873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	228	406	0	ENST00000305921.3:c.1778C>T	p.Pro593Leu	p.P593L	ENST00000305921	NM_003620.3	593	cCt/cTt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5258054	5258054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	172	524	0	ENST00000357368.4:c.680C>T	p.Ser227Phe	p.S227F	ENST00000357368	NM_002850.3	227	tCc/tTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11113831	11113831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	170	612	0	ENST00000344626.4:c.1939C>T	p.Pro647Ser	p.P647S	ENST00000344626	NM_003072.3	647	Ccg/Tcg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570052	212570052	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	113	304	0	ENST00000342788.4:c.1189G>C	p.Glu397Gln	p.E397Q	ENST00000342788	NM_005235.2	397	Gag/Cag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30664696	30664696	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	61	265	0	ENST00000359013.4:c.100G>T	p.Glu34Ter	p.E34*	ENST00000359013	NM_001024847.2	34	Gaa/Taa																																																																														
TP63	8626	MSKCC	GRCh37	3	189582099	189582099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs754080925		P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	150	442	0	ENST00000264731.3:c.658C>T	p.Pro220Ser	p.P220S	ENST00000264731	NM_003722.4	220	Cct/Tct																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807788	1807788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	98	770	0	ENST00000260795.2:c.1847G>A	p.Arg616Lys	p.R616K	ENST00000260795		616	aGg/aAg																																																																														
TET2	54790	MSKCC	GRCh37	4	106157314	106157314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	102	345	0	ENST00000380013.4:c.2215C>T	p.Pro739Ser	p.P739S	ENST00000380013	NM_001127208.2	739	Cct/Tct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687446	117687446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	35	250	0	ENST00000368508.3:c.2605G>A	p.Asp869Asn	p.D869N	ENST00000368508	NM_002944.2	869	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	68982094	68982094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	78	452	0	ENST00000288368.4:c.1468C>T	p.His490Tyr	p.H490Y	ENST00000288368	NM_024870.2	490	Cat/Tat																																																																														
SYK	6850	MSKCC	GRCh37	9	93641080	93641080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	197	444	0	ENST00000375746.1:c.1426C>T	p.His476Tyr	p.H476Y	ENST00000375746	NM_001174167.1	476	Cat/Tat																																																																														
MED12	9968	MSKCC	GRCh37	X	70352295	70352295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	124	623	0	ENST00000374080.3:c.4322G>T	p.Gly1441Val	p.G1441V	ENST00000374080		1441	gGa/gTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099423	27099438	+	frameshift_variant	Frame_Shift_Del	DEL	GATGGGGCGCATGTCC	GATGGGGCGCATGTCC	AG			P-0045164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	192	488	2	ENST00000324856.7:c.3660_3675delinsAG	p.Met1220IlefsTer3	p.M1220Ifs*3	ENST00000324856	NM_006015.4	1220	atGATGGGGCGCATGTCC/atAG																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188317	32188317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144492578		P-0045166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	368	843	0	ENST00000375023.3:c.1024G>A	p.Val342Met	p.V342M	ENST00000375023	NM_004557.3	342	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416393	49416393	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	216	509	3	ENST00000301067.7:c.16318del	p.Glu5440ArgfsTer16	p.E5440Rfs*16	ENST00000301067	NM_003482.3	5440	Gag/ag																																																																														
CIC	23152	MSKCC	GRCh37	19	42794511	42794511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1696	410	949	1	ENST00000575354.2:c.1591G>T	p.Ala531Ser	p.A531S	ENST00000575354	NM_015125.3	531	Gcc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790075	40790075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	341	649	1	ENST00000373198.4:c.2656C>A	p.Pro886Thr	p.P886T	ENST00000373198	NM_133170.3	886	Ccc/Acc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259412	89259412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	122	447	0	ENST00000336596.2:c.556G>A	p.Val186Ile	p.V186I	ENST00000336596	NM_005233.5	186	Gtt/Att																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39003667	39003667	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	185	293	0	ENST00000357387.3:c.253A>G	p.Ile85Val	p.I85V	ENST00000357387	NM_152756.3	85	Ata/Gta																																																																														
HGF	3082	MSKCC	GRCh37	7	81374429	81374429	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	76	291	2	ENST00000222390.5:c.633C>A	p.Cys211Ter	p.C211*	ENST00000222390	NM_000601.4	211	tgC/tgA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069649	69069649	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	78	368	2	ENST00000288368.4:c.4324A>G	p.Lys1442Glu	p.K1442E	ENST00000288368	NM_024870.2	1442	Aaa/Gaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8733789	8733789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	454	541	0	ENST00000356435.5:c.55G>T	p.Asp19Tyr	p.D19Y	ENST00000356435		19	Gat/Tat																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006089	22006089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1327	915	863	2	ENST00000276925.6:c.314G>T	p.Arg105Leu	p.R105L	ENST00000276925	NM_004936.3	105	cGg/cTg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652350	48652350	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	942	507	4	ENST00000376670.3:c.1021A>T	p.Ser341Cys	p.S341C	ENST00000376670	NM_002049.3	341	Agc/Tgc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728636	190728639	+	missense_variant	Missense_Mutation	ONP	AACC	AACC	CACT			P-0045166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	88	404	0	ENST00000441310.2:c.2024_2027delinsCACT	p.Gln675_Pro676delinsProLeu	p.Q675_P676delinsPL	ENST00000441310	NM_000534.4	675	cAACCa/cCACTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1391	83	944	2	ENST00000269305.4:c.470T>A	p.Val157Asp	p.V157D	ENST00000269305	NM_001126112.2	157	gTc/gAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	251	349	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069931	5069931	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	11	163	0	ENST00000381652.3:c.1520C>G	p.Ser507Ter	p.S507*	ENST00000381652	NM_004972.3	507	tCa/tGa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52685766	52685766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	85	272	0	ENST00000394830.3:c.706A>G	p.Arg236Gly	p.R236G	ENST00000394830	NM_018313.4	236	Agg/Ggg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	71873218	71873218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	122	319	1	ENST00000357731.5:c.976G>A	p.Ala326Thr	p.A326T	ENST00000357731	NM_173808.2	326	Gct/Act																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643737	38643737	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	530	512	1	ENST00000299084.4:c.1207C>T	p.Arg403Ter	p.R403*	ENST00000299084	NM_152594.2	403	Cga/Tga																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608102	28608102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	285	373	0	ENST00000241453.7:c.1864G>C	p.Gly622Arg	p.G622R	ENST00000241453	NM_004119.2	622	Gga/Cga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81939092	81939097	+	inframe_deletion	In_Frame_Del	DEL	ATGTGG	ATGTGG	-			P-0045169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			880	156	443	0	ENST00000359376.3:c.1447_1452del	p.Met483_Trp484del	p.M483_W484del	ENST00000359376	NM_002661.3	483	ATGTGG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7576970	7577335	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAG	ATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAG	-			P-0045169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	272	497	0	ENST00000269305.4:c.782+164_920-44del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212285167	212285167	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0045169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	151	249	0	ENST00000342788.4:c.3134G>C	p.Arg1045Thr	p.R1045T	ENST00000342788	NM_005235.2	1045	aGg/aCg																																																																														
MED12	9968	MSKCC	GRCh37	X	70338641	70338641	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	521	623	0	ENST00000374080.3:c.40del	p.Leu14Ter	p.L14*	ENST00000374080		13	Ccc/cc																																																																														
MET	4233	MSKCC	GRCh37	7	116411888	116411904	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCTCTGTTTTAAGAT	TCTCTCTGTTTTAAGAT	A			P-0045169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	955	621	0	ENST00000397752.3:c.2888-15_2889delinsA		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618691	37618691	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	480	599	0	ENST00000447079.4:c.367del	p.Leu123Ter	p.L123*	ENST00000447079	NM_015083.1	123	Cta/ta																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619348	37619349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0045170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	243	457	0	ENST00000447079.4:c.1025dup	p.Ser343GlufsTer8	p.S343Efs*8	ENST00000447079	NM_015083.1	342	ctg/cTtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0045172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	80	330	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424696	49424696	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	91	689	0	ENST00000301067.7:c.13651T>G	p.Leu4551Val	p.L4551V	ENST00000301067	NM_003482.3	4551	Ttg/Gtg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045104	47045132	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCTCTTGCAGCAAAACCTTGAGATTCAC	CCCTCTTGCAGCAAAACCTTGAGATTCAC	-			P-0045172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	124	579	0	ENST00000329236.7:c.2122-10_2140del		p.X708_splice	ENST00000329236	NM_001204466.1	708																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	124	357	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	69	196	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	38	521	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446208	49446208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	69	729	0	ENST00000301067.7:c.1259-1G>A		p.X420_splice	ENST00000301067	NM_003482.3	420																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11141533	11141534	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	57	735	1	ENST00000344626.4:c.3512_3513del	p.Val1171AspfsTer4	p.V1171Dfs*4	ENST00000344626	NM_003072.3	1170	acTGtg/actg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023165	150023165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	72	498	0	ENST00000253339.5:c.98A>G	p.Glu33Gly	p.E33G	ENST00000253339		33	gAa/gGa																																																																														
MYC	4609	MSKCC	GRCh37	8	128753202	128753202	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0045173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	47	256	0	ENST00000377970.2:c.1363T>G	p.Ter455GluextTer19	p.*455Eext*19	ENST00000377970	NM_002467.4	455	Taa/Gaa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40456394	40456394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	169	795	0	ENST00000345506.4:c.1204G>A	p.Val402Met	p.V402M	ENST00000345506	NM_003152.3	402	Gtg/Atg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	165	364	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	160	672	0	ENST00000344626.4:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000344626	NM_003072.3	1192	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	179	478	1				ENST00000310581	NM_198253.2																																																																																
AURKA	6790	MSKCC	GRCh37	20	54956529	54956529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	96	373	0	ENST00000312783.6:c.665T>C	p.Leu222Pro	p.L222P	ENST00000312783	NM_198436.1	222	cTt/cCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	283	785	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290966	15290966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	161	1162	0	ENST00000263388.2:c.3244G>A	p.Glu1082Lys	p.E1082K	ENST00000263388	NM_000435.2	1082	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290990	15290990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	165	1142	0	ENST00000263388.2:c.3220G>C	p.Glu1074Gln	p.E1074Q	ENST00000263388	NM_000435.2	1074	Gag/Cag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291945	15291945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	144	1187	0	ENST00000263388.2:c.2821G>C	p.Asp941His	p.D941H	ENST00000263388	NM_000435.2	941	Gac/Cac																																																																														
AURKA	6790	MSKCC	GRCh37	20	54956517	54956517	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	93	364	0	ENST00000312783.6:c.677C>A	p.Ser226Ter	p.S226*	ENST00000312783	NM_198436.1	226	tCa/tAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226010	53226011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0045181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	359	1168	0	ENST00000375401.3:c.2837_2838dup	p.Leu947ProfsTer15	p.L947Pfs*15	ENST00000375401	NM_004187.3	946	-/CC																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144049	11144051	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1272	29	879	0	ENST00000344626.4:c.3634_3636del	p.Glu1212del	p.E1212del	ENST00000344626	NM_003072.3	1210	gtGGAg/gtg																																																																														
NBN	4683	MSKCC	GRCh37	8	90990538	90990538	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	12	327	0	ENST00000265433.3:c.494T>A	p.Leu165His	p.L165H	ENST00000265433	NM_002485.4	165	cTc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057907	27057908	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGACG			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1425	21	692	0	ENST00000324856.7:c.1616_1620dup	p.Thr541ArgfsTer80	p.T541Rfs*80	ENST00000324856	NM_006015.4	539	tcg/tCGACGcg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087392	27087392	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	10	634	0	ENST00000324856.7:c.1966G>C	p.Ala656Pro	p.A656P	ENST00000324856	NM_006015.4	656	Gct/Cct																																																																														
STK11	6794	MSKCC	GRCh37	19	1207119	1207120	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1606	20	963	1	ENST00000326873.7:c.207_208delinsTT	p.Glu70Ter	p.E70*	ENST00000326873	NM_000455.4	69	tcGGag/tcTTag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602736	10602736	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1451	38	1017	0	ENST00000171111.5:c.842T>A	p.Leu281Gln	p.L281Q	ENST00000171111	NM_203500.1	281	cTg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296339	15296339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1525	35	1048	0	ENST00000263388.2:c.2103del	p.His701GlnfsTer159	p.H701Qfs*159	ENST00000263388	NM_000435.2	701	caT/ca																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876488	35876488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	20	595	2	ENST00000303115.3:c.1280C>A	p.Thr427Lys	p.T427K	ENST00000303115	NM_002185.3	427	aCa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	214	708	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274172	10274172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	26	606	2	ENST00000330684.3:c.97G>A	p.Ala33Thr	p.A33T	ENST00000330684	NM_001134407.1	33	Gcg/Acg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869501	102869501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	133	468	1	ENST00000307046.8:c.140C>T	p.Thr47Met	p.T47M	ENST00000307046	NM_001111285.1	47	aCg/aTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68847252	68847252	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141864044		P-0045185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	220	484	2	ENST00000261769.5:c.1174G>A	p.Val392Ile	p.V392I	ENST00000261769	NM_004360.3	392	Gta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416084	49416084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	45	600	2	ENST00000301067.7:c.16391C>T	p.Thr5464Met	p.T5464M	ENST00000301067	NM_003482.3	5464	aCg/aTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0045186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	122	395	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	201	452	0				ENST00000310581	NM_198253.2																																																																																
ARID2	196528	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	65	371	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508539	106508539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	58	422	0	ENST00000359195.3:c.533G>A	p.Arg178His	p.R178H	ENST00000359195	NM_002649.2	178	cGt/cAt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11194480	11194480	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	62	626	0	ENST00000361445.4:c.5174A>T	p.Gln1725Leu	p.Q1725L	ENST00000361445	NM_004958.3	1725	cAg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092729	27092729	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	54	372	0	ENST00000324856.7:c.2750A>T	p.Asn917Ile	p.N917I	ENST00000324856	NM_006015.4	917	aAt/aTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120480510	120480510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	62	420	0	ENST00000256646.2:c.3307G>A	p.Val1103Ile	p.V1103I	ENST00000256646	NM_024408.3	1103	Gtc/Atc																																																																														
RB1	5925	MSKCC	GRCh37	13	49027192	49027192	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	49	427	0	ENST00000267163.4:c.1759G>T	p.Glu587Ter	p.E587*	ENST00000267163	NM_000321.2	587	Gaa/Taa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858010	9858010	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	55	565	0	ENST00000330684.3:c.3391G>C	p.Asp1131His	p.D1131H	ENST00000330684	NM_001134407.1	1131	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579494	7579494	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	212	906	0	ENST00000269305.4:c.193del	p.Arg65GlufsTer58	p.R65Efs*58	ENST00000269305	NM_001126112.2	65	Aga/ga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306631	41306632	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	77	770	0	ENST00000373198.4:c.1027_1028delinsAA	p.Pro343Asn	p.P343N	ENST00000373198	NM_133170.3	343	CCc/AAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448564	89448564	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	90	505	0	ENST00000336596.2:c.1528C>G	p.Arg510Gly	p.R510G	ENST00000336596	NM_005233.5	510	Cga/Gga																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55153617	55153617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	64	458	0	ENST00000257290.5:c.2583G>T	p.Trp861Cys	p.W861C	ENST00000257290	NM_006206.4	861	tgG/tgT																																																																														
KIT	3815	MSKCC	GRCh37	4	55573449	55573449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	28	296	0	ENST00000288135.5:c.1111A>G	p.Ile371Val	p.I371V	ENST00000288135	NM_000222.2	371	Atc/Gtc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554978	187554978	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	35	226	0	ENST00000441802.2:c.4184-1G>T		p.X1395_splice	ENST00000441802	NM_005245.3	1395																																																																															
ESR1	2099	MSKCC	GRCh37	6	152382147	152382148	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	31	320	0	ENST00000206249.3:c.1257_1258delinsAT	p.Gly420Cys	p.G420C	ENST00000206249	NM_000125.3	419	gaGGgc/gaATgc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100496	157100496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	19	159	0	ENST00000346085.5:c.1433A>T	p.Asp478Val	p.D478V	ENST00000346085	NM_020732.3	478	gAc/gTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68972979	68972979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	51	386	0	ENST00000288368.4:c.1304G>T	p.Gly435Val	p.G435V	ENST00000288368	NM_024870.2	435	gGa/gTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69136793	69136793	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	82	357	0	ENST00000288368.4:c.4708-1G>T		p.X1570_splice	ENST00000288368	NM_024870.2	1570																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090559	5090559	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	38	292	0	ENST00000381652.3:c.2875C>T	p.Gln959Ter	p.Q959*	ENST00000381652	NM_004972.3	959	Cag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040929	47040929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	124	1157	0	ENST00000329236.7:c.1228del	p.Ala410ProfsTer216	p.A410Pfs*216	ENST00000329236	NM_001204466.1	409	Ggg/gg																																																																														
AR	367	MSKCC	GRCh37	X	66766239	66766239	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	62	593	0	ENST00000374690.3:c.1253del	p.Gly418ValfsTer61	p.G418Vfs*61	ENST00000374690	NM_000044.3	417	gcG/gc																																																																														
ATRX	546	MSKCC	GRCh37	X	76952171	76952172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0045188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	46	319	0	ENST00000373344.5:c.262_263dup	p.Tyr89SerfsTer3	p.Y89Sfs*3	ENST00000373344	NM_000489.3	88	aag/aaAAg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248679	59248679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	163	909	0	ENST00000371222.2:c.64G>C	p.Glu22Gln	p.E22Q	ENST00000371222	NM_002228.3	22	Gag/Cag																																																																														
NF1	4763	MSKCC	GRCh37	17	29654533	29654533	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	44	250	0	ENST00000358273.4:c.5285del	p.Val1762AlafsTer3	p.V1762Afs*3	ENST00000358273	NM_001042492.2	1762	gTc/gc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492910	56492910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	21	262	0	ENST00000407977.2:c.29C>T	p.Ala10Val	p.A10V	ENST00000407977		10	gCt/gTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187516887	187516887	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	48	490	0	ENST00000441802.2:c.13094T>C	p.Val4365Ala	p.V4365A	ENST00000441802	NM_005245.3	4365	gTg/gCg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31422963	31422963	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	67	531	0	ENST00000344624.3:c.3350T>A	p.Ile1117Asn	p.I1117N	ENST00000344624		1117	aTt/aAt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674247	86674248	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	42	337	0	ENST00000274376.6:c.2380dup	p.Ala794GlyfsTer36	p.A794Gfs*36	ENST00000274376	NM_002890.2	793	-/G																																																																														
APC	324	MSKCC	GRCh37	5	112176120	112176126	+	frameshift_variant	Frame_Shift_Del	DEL	GTCAGCT	GTCAGCT	-			P-0045189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	46	405	0	ENST00000257430.4:c.4830_4836del	p.Gln1611LeufsTer37	p.Q1611Lfs*37	ENST00000257430	NM_000038.5	1610	aGTCAGCTg/ag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0045190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	104	215	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967350	134967350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs61736108		P-0045190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	129	413	0	ENST00000398015.3:c.2689G>A	p.Val897Met	p.V897M	ENST00000398015	NM_004441.4	897	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112175219	112175219	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	70	192	1	ENST00000257430.4:c.3928A>T	p.Lys1310Ter	p.K1310*	ENST00000257430	NM_000038.5	1310	Aag/Tag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351178	89351178	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	85	667	0	ENST00000301030.4:c.1772C>G	p.Pro591Arg	p.P591R	ENST00000301030	NM_001256183.1	591	cCa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577545	7577547	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0045190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	201	580	0	ENST00000269305.4:c.734_736del	p.Gly245_Met246delinsVal	p.G245_M246delinsV	ENST00000269305	NM_001126112.2	245	gGCAtg/gtg																																																																														
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	70	198	0	ENST00000257430.4:c.3934G>A	p.Gly1312Arg	p.G1312R	ENST00000257430	NM_000038.5	1312	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	163	510	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	248	826	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
NF2	4771	MSKCC	GRCh37	22	30038233	30038233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	48	394	0	ENST00000338641.4:c.406G>A	p.Glu136Lys	p.E136K	ENST00000338641	NM_000268.3	136	Gag/Aag																																																																														
TET1	80312	MSKCC	GRCh37	10	70432749	70432749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	103	478	0	ENST00000373644.4:c.4771G>T	p.Gly1591Cys	p.G1591C	ENST00000373644	NM_030625.2	1591	Ggt/Tgt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99185116	99185116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	137	360	0	ENST00000074304.5:c.2518G>A	p.Val840Ile	p.V840I	ENST00000074304	NM_001134224.1	840	Gtt/Att																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057318	180057318	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	179	796	0	ENST00000261937.6:c.420C>G	p.Ile140Met	p.I140M	ENST00000261937	NM_182925.4	140	atC/atG																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032006	26032014	+	inframe_deletion	In_Frame_Del	DEL	CCTGCAGCG	CCTGCAGCG	-			P-0045202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	110	411	0	ENST00000244661.2:c.275_283del	p.Ala92_Gln94del	p.A92_Q94del	ENST00000244661	NM_003537.3	92	gCGCTGCAGGag/gag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974751	21974756	+	inframe_deletion	In_Frame_Del	DEL	CTACCC	CTACCC	-			P-0045202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	102	353	0	ENST00000304494.5:c.71_76del	p.Arg24_Glu26delinsGln	p.R24_E26delinsQ	ENST00000304494	NM_000077.4	24	cGGGTAGag/cag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974751	21974756	+	inframe_deletion	In_Frame_Del	DEL	CTACCC	CTACCC	-			P-0045202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	102	353	0	ENST00000304494.5:c.71_76del	p.Arg24_Glu26delinsGln	p.R24_E26delinsQ	ENST00000304494	NM_000077.4	24	cGGGTAGag/cag																																																																														
XIAP	331	MSKCC	GRCh37	X	123034466	123034466	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	118	436	0	ENST00000355640.3:c.1223A>T	p.Glu408Val	p.E408V	ENST00000355640		408	gAg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	76	513	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0045203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	106	747	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030472	47030472	+	intron_variant	Intron	SNP	C	C	T			P-0045203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	198	934	1	ENST00000329236.7:c.201+1575C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56486842	56486842	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	14	503	0	ENST00000267101.3:c.1256G>C	p.Gly419Ala	p.G419A	ENST00000267101	NM_001982.3	419	gGa/gCa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368395	225368395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	103	318	0	ENST00000264414.4:c.1351G>C	p.Glu451Gln	p.E451Q	ENST00000264414	NM_003590.4	451	Gaa/Caa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368404	225368404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	118	322	0	ENST00000264414.4:c.1342G>A	p.Asp448Asn	p.D448N	ENST00000264414	NM_003590.4	448	Gat/Aat																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20152122	20152122	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	96	392	0	ENST00000379607.5:c.208T>G	p.Trp70Gly	p.W70G	ENST00000379607	NM_001412.3	70	Tgg/Ggg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074080	8074081	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	43	334	0	ENST00000377482.5:c.578_579del	p.Tyr193Ter	p.Y193*	ENST00000377482	NM_018948.3	193	tAT/t																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444684	49444684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	411	896	0	ENST00000301067.7:c.2782C>G	p.Gln928Glu	p.Q928E	ENST00000301067	NM_003482.3	928	Cag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579410	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCCAGGAG	GGGGCCAGGAG	-			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	159	870	0	ENST00000269305.4:c.267_277delCTCCTGGCCCC	p.Ser90ValfsTer55	p.S90Vfs*55	ENST00000269305	NM_001126112.2	89	ccCTCCTGGCCCCtg/cctg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227647	36227647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	81	654	0	ENST00000222270.7:c.7216G>A	p.Ala2406Thr	p.A2406T	ENST00000222270	NM_014727.1	2406	Gcc/Acc																																																																														
EP300	2033	MSKCC	GRCh37	22	41548213	41548213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	61	266	0	ENST00000263253.7:c.3001A>G	p.Lys1001Glu	p.K1001E	ENST00000263253	NM_001429.3	1001	Aaa/Gaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952063	178952063	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	109	328	0	ENST00000263967.3:c.3118A>T	p.Met1040Leu	p.M1040L	ENST00000263967	NM_006218.2	1040	Atg/Ttg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	131	512	1				ENST00000310581	NM_198253.2																																																																																
MDC1	9656	MSKCC	GRCh37	6	30675735	30675735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1191	81	821	0	ENST00000376406.3:c.2621C>G	p.Ser874Cys	p.S874C	ENST00000376406	NM_014641.2	874	tCt/tGt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552770	106552770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	133	562	0	ENST00000369096.4:c.735G>C	p.Lys245Asn	p.K245N	ENST00000369096	NM_001198.3	245	aaG/aaC																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402683	139402683	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0045204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	179	835	0	ENST00000277541.6:c.3325+1G>T		p.X1109_splice	ENST00000277541	NM_017617.3	1109																																																																															
MET	4233	MSKCC	GRCh37	7	116411882	116411903	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTTTCTCTCTGTTTTAAGA	TTTCTTTCTCTCTGTTTTAAGA	-			P-0045205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	39	870	0	ENST00000397752.3:c.2888-20_2889del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	11	397	0	ENST00000347630.2:c.305T>C	p.Phe102Ser	p.F102S	ENST00000347630	NM_001007230.1	102	tTc/tCc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517497	176517497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	10	794	0	ENST00000292408.4:c.198G>A	p.Trp66Ter	p.W66*	ENST00000292408	NM_213647.1	66	tgG/tgA																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0045207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	101	509	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518437	204518437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201947927		P-0045207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	43	383	0	ENST00000367182.3:c.1100C>T	p.Ser367Leu	p.S367L	ENST00000367182	NM_001278516.1	367	tCg/tTg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53231106	53231106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	167	293	0	ENST00000375401.3:c.1796G>A	p.Arg599His	p.R599H	ENST00000375401	NM_004187.3	599	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575055	48575055	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	10	222	0	ENST00000342988.3:c.250-1G>A		p.X84_splice	ENST00000342988	NM_005359.5	84																																																																															
TP53	7157	MSKCC	GRCh37	17	7578460	7578474	+	inframe_deletion	In_Frame_Del	DEL	ACGCGGGTGCCGGGC	ACGCGGGTGCCGGGC	-			P-0045207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	171	765	0	ENST00000269305.4:c.456_470del	p.Pro153_Val157del	p.P153_V157del	ENST00000269305	NM_001126112.2	152	ccGCCCGGCACCCGCGTc/ccc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	54	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0045212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	95	669	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584533	48584533	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	49	329	0	ENST00000342988.3:c.706G>T	p.Gly236Ter	p.G236*	ENST00000342988	NM_005359.5	236	Gga/Tga																																																																														
CALR	811	MSKCC	GRCh37	19	13051093	13051093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	58	500	0	ENST00000316448.5:c.529C>G	p.Arg177Gly	p.R177G	ENST00000316448	NM_004343.3	177	Cgg/Ggg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30648412	30648412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	67	527	0	ENST00000359013.4:c.37C>G	p.His13Asp	p.H13D	ENST00000359013	NM_001024847.2	13	Cac/Gac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	53	750	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
BRAF	673	MSKCC	GRCh37	7	140439656	140439656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	22	314	0	ENST00000288602.6:c.2083G>C	p.Glu695Gln	p.E695Q	ENST00000288602	NM_004333.4	695	Gag/Cag																																																																														
PMS1	5378	MSKCC	GRCh37	2	190732584	190732584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	28	380	0	ENST00000441310.2:c.2402G>C	p.Arg801Thr	p.R801T	ENST00000441310	NM_000534.4	801	aGa/aCa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774125	66774125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	48	880	1	ENST00000307102.5:c.601C>T	p.Arg201Cys	p.R201C	ENST00000307102	NM_002755.3	201	Cgt/Tgt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	17	247	0	ENST00000397062.3:c.72G>T	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgT																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813941	50813941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	78	555	0	ENST00000398568.2:c.1495G>A	p.Ala499Thr	p.A499T	ENST00000398568	NM_001042412.1	499	Gct/Act																																																																														
KDM5A	5927	MSKCC	GRCh37	12	406210	406210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	52	302	0	ENST00000399788.2:c.4231C>G	p.Gln1411Glu	p.Q1411E	ENST00000399788	NM_001042603.1	1411	Caa/Gaa																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112745386	112745386	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	29	403	0	ENST00000369452.4:c.704G>T	p.Gly235Val	p.G235V	ENST00000369452	NM_007373.3	235	gGt/gTt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483959	88483959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	78	544	0	ENST00000360948.2:c.1611C>A	p.Asp537Glu	p.D537E	ENST00000360948	NM_001012338.2	537	gaC/gaA																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469630	25469630	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	41	647	0	ENST00000264709.3:c.1138G>T	p.Ala380Ser	p.A380S	ENST00000264709	NM_175629.2	380	Gcg/Tcg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38982012	38982012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	95	372	0	ENST00000357387.3:c.710A>T	p.His237Leu	p.H237L	ENST00000357387	NM_152756.3	237	cAt/cTt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038369	180038369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	25	676	1	ENST00000261937.6:c.3648C>G	p.Asp1216Glu	p.D1216E	ENST00000261937	NM_182925.4	1216	gaC/gaG																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670594	30670594	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	49	559	0	ENST00000376406.3:c.5926G>C	p.Glu1976Gln	p.E1976Q	ENST00000376406	NM_014641.2	1976	Gag/Cag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967225	93967225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	47	330	0	ENST00000369303.4:c.2127A>G	p.Ile709Met	p.I709M	ENST00000369303	NM_004440.3	709	atA/atG																																																																														
TEK	7010	MSKCC	GRCh37	9	27192495	27192495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	57	449	0	ENST00000380036.4:c.1498G>A	p.Glu500Lys	p.E500K	ENST00000380036	NM_000459.3	500	Gag/Aag																																																																														
ABL1	25	MSKCC	GRCh37	9	133759938	133759939	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	35	818	3	ENST00000318560.5:c.2261_2262delinsTT	p.Gly754Val	p.G754V	ENST00000318560	NM_005157.4	754	gGG/gTT																																																																														
MED12	9968	MSKCC	GRCh37	X	70348146	70348146	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0045244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	55	237	0	ENST00000374080.3:c.3210G>T	p.Arg1070Ser	p.R1070S	ENST00000374080		1070	agG/agT																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	367	383	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0045245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	118	720	0	ENST00000269305.4:c.378C>G	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taG																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699372	47699372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	75	333	0	ENST00000347630.2:c.136G>A	p.Glu46Lys	p.E46K	ENST00000347630	NM_001007230.1	46	Gag/Aag																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874287	155874287	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	11	381	0	ENST00000368323.3:c.244T>G	p.Phe82Val	p.F82V	ENST00000368323	NM_006912.5	82	Ttt/Gtt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226367	2226367	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	18	702	0	ENST00000398665.3:c.3847T>G	p.Ser1283Ala	p.S1283A	ENST00000398665	NM_032482.2	1283	Tct/Gct																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873101	136873101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	32	358	0	ENST00000241393.3:c.397G>C	p.Asp133His	p.D133H	ENST00000241393	NM_003467.2	133	Gac/Cac																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30946627	30946627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	87	160	0	ENST00000375687.4:c.49G>T	p.Ala17Ser	p.A17S	ENST00000375687	NM_015338.5	17	Gcg/Tcg																																																																														
ATM	472	MSKCC	GRCh37	11	108186601	108186601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	36	358	0	ENST00000278616.4:c.6058G>T	p.Gly2020Cys	p.G2020C	ENST00000278616	NM_000051.3	2020	Ggc/Tgc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156740	20156740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0045246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	61	367	1	ENST00000379607.5:c.17G>T	p.Gly6Val	p.G6V	ENST00000379607	NM_001412.3	6	gGt/gTt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94212929	94212929	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	27	236	0	ENST00000323929.3:c.315-2A>T		p.X105_splice	ENST00000323929	NM_005591.3	105																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245424	46245424	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	25	358	0	ENST00000334344.6:c.3519del	p.Ile1174Ter	p.I1174*	ENST00000334344	NM_152641.2	1173	aCc/ac																																																																														
MAX	4149	MSKCC	GRCh37	14	65560534	65560534	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	59	327	0	ENST00000358664.4:c.64-1G>T		p.X22_splice	ENST00000358664	NM_002382.4	22																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89371734	89371734	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	55	593	0	ENST00000301030.4:c.106C>G	p.Leu36Val	p.L36V	ENST00000301030	NM_001256183.1	36	Cta/Gta																																																																														
NF1	4763	MSKCC	GRCh37	17	29556445	29556445	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	29	405	0	ENST00000358273.4:c.2812A>T	p.Lys938Ter	p.K938*	ENST00000358273	NM_001042492.2	938	Aag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29557277	29557277	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	21	234	0	ENST00000358273.4:c.2991-1G>T		p.X997_splice	ENST00000358273	NM_001042492.2	997																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1327796	1327796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	54	481	0	ENST00000381566.1:c.85G>A	p.Gly29Arg	p.G29R	ENST00000381566		29	Gga/Aga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0045248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	66	551	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	97	434	2				ENST00000310581	NM_198253.2																																																																																
DDR2	4921	MSKCC	GRCh37	1	162741915	162741915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	35	394	0	ENST00000367921.3:c.1606A>G	p.Asn536Asp	p.N536D	ENST00000367921	NM_006182.2	536	Aac/Gac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653834	89653835	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0045248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	36	342	0	ENST00000371953.3:c.133_134dup	p.Arg47ThrfsTer8	p.R47Tfs*8	ENST00000371953	NM_000314.4	44	-/GT																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226387	2226387	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0045248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	81	757	0	ENST00000326181.6:c.1998+2T>C		p.X666_splice	ENST00000326181	NM_032271.2	666																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212248345	212248345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	21	178	0	ENST00000342788.4:c.3922G>A	p.Val1308Met	p.V1308M	ENST00000342788	NM_005235.2	1308	Gtg/Atg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31395614	31395614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	114	651	0	ENST00000328111.2:c.2467C>T	p.Arg823Cys	p.R823C	ENST00000328111	NM_006892.3	823	Cgt/Tgt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652124	36652125	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0045248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	66	661	0	ENST00000244741.5:c.246_247delinsAT	p.Arg83Trp	p.R83W	ENST00000244741	NM_000389.4	82	ccCCgg/ccATgg																																																																														
HGF	3082	MSKCC	GRCh37	7	81372747	81372747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	54	327	0	ENST00000222390.5:c.787C>T	p.Pro263Ser	p.P263S	ENST00000222390	NM_000601.4	263	Ccc/Tcc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187718	11187718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	271	638	0	ENST00000361445.4:c.6179G>A	p.Arg2060Gln	p.R2060Q	ENST00000361445	NM_004958.3	2060	cGg/cAg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846363	156846363	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	116	744	0	ENST00000524377.1:c.1804C>T	p.Arg602Ter	p.R602*	ENST00000524377	NM_002529.3	602	Cga/Tga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137065	64137065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	52	722	1	ENST00000334205.4:c.1576G>A	p.Val526Met	p.V526M	ENST00000334205	NM_003942.2	526	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	184	394	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	290	748	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118888	70118888	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	255	737	0	ENST00000245479.2:c.461del	p.Phe154SerfsTer29	p.F154Sfs*29	ENST00000245479	NM_000346.3	154	Ttc/tc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591903	48591903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	101	449	0	ENST00000342988.3:c.1066C>T	p.Pro356Ser	p.P356S	ENST00000342988	NM_005359.5	356	Cct/Tct																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593539	48593539	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	48	223	0	ENST00000342988.3:c.1292del	p.Pro431GlnfsTer5	p.P431Qfs*5	ENST00000342988	NM_005359.5	430	taC/ta																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231339	5231339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	115	656	0	ENST00000357368.4:c.2137G>A	p.Val713Ile	p.V713I	ENST00000357368	NM_002850.3	713	Gtc/Atc																																																																														
CIC	23152	MSKCC	GRCh37	19	42792125	42792125	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	91	557	0	ENST00000575354.2:c.929G>T	p.Gly310Val	p.G310V	ENST00000575354	NM_015125.3	310	gGg/gTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797159	42797159	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189391255		P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	170	987	3	ENST00000575354.2:c.3521C>T	p.Pro1174Leu	p.P1174L	ENST00000575354	NM_015125.3	1174	cCg/cTg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198268382	198268382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	94	438	0	ENST00000335508.6:c.1646G>A	p.Arg549His	p.R549H	ENST00000335508	NM_012433.2	549	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	58	326	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175473	112175474	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	82	308	0	ENST00000257430.4:c.4183dup	p.Ser1395LysfsTer3	p.S1395Kfs*3	ENST00000257430	NM_000038.5	1394	-/A																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265445	152265445	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149490424		P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	220	549	0	ENST00000206249.3:c.898C>T	p.Arg300Cys	p.R300C	ENST00000206249	NM_000125.3	300	Cgc/Tgc																																																																														
HGF	3082	MSKCC	GRCh37	7	81381567	81381567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	41	245	1	ENST00000222390.5:c.494C>T	p.Ser165Leu	p.S165L	ENST00000222390	NM_000601.4	165	tCg/tTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257201	16257201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	32	523	0	ENST00000375759.3:c.4466C>G	p.Pro1489Arg	p.P1489R	ENST00000375759	NM_015001.2	1489	cCt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	18	778	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696435	47696435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	75	529	0	ENST00000347630.2:c.388G>A	p.Asp130Asn	p.D130N	ENST00000347630	NM_001007230.1	130	Gac/Aac																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	24	507	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	230	379	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	230	444	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112177791	112177791	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	60	274	0	ENST00000257430.4:c.6500T>G	p.Ile2167Ser	p.I2167S	ENST00000257430	NM_000038.5	2167	aTt/aGt																																																																														
ATRX	546	MSKCC	GRCh37	X	76931738	76931740	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0045251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	133	173	1	ENST00000373344.5:c.3790_3792del	p.Asp1264del	p.D1264del	ENST00000373344	NM_000489.3	1264	GAC/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	59	412	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0045252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	104	494	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246440	41246440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	106	590	0	ENST00000357654.3:c.1108G>A	p.Val370Ile	p.V370I	ENST00000357654	NM_007294.3	370	Gtt/Att																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0045252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	109	592	1	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106983	27106983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	128	491	0	ENST00000324856.7:c.6595delC	p.Leu2199Ter	p.L2199*	ENST00000324856	NM_006015.4	2198	ttC/tt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2164220	2164220	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	31	576	0	ENST00000398665.3:c.37G>C	p.Val13Leu	p.V13L	ENST00000398665	NM_032482.2	13	Gtg/Ctg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	45	220	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0045254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	116	471	0	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984935	9984935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	72	453	0	ENST00000330684.3:c.1030G>A	p.Asp344Asn	p.D344N	ENST00000330684	NM_001134407.1	344	Gat/Aat																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873818	35873818	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	66	312	0	ENST00000216797.5:c.33G>A	p.Trp11Ter	p.W11*	ENST00000216797	NM_020529.2	11	tgG/tgA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830084	72830084	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	119	525	0	ENST00000268489.5:c.6497T>G	p.Ile2166Ser	p.I2166S	ENST00000268489	NM_006885.3	2166	aTt/aGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	31	546	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	66	409	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SUFU	51684	MSKCC	GRCh37	10	104359302	104359302	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	36	603	1	ENST00000369902.3:c.1022+1G>A		p.X341_splice	ENST00000369902	NM_016169.3	341																																																																															
ATM	472	MSKCC	GRCh37	11	108122680	108122680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	55	440	0	ENST00000278616.4:c.1724C>T	p.Ser575Leu	p.S575L	ENST00000278616	NM_000051.3	575	tCa/tTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373931	118373931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	14	359	0	ENST00000534358.1:c.7324G>C	p.Glu2442Gln	p.E2442Q	ENST00000534358	NM_005933.3	2442	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579285	7579358	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGAC	GGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAGTCACAGACTTGGCTGTCCCAGAATGCAAGAAGCCCAGAC	-			P-0045273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	36	481	0	ENST00000269305.4:c.329_375+27del		p.X110_splice	ENST00000269305	NM_001126112.2	110																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212286768	212286768	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	51	409	0	ENST00000342788.4:c.2928G>C	p.Arg976Ser	p.R976S	ENST00000342788	NM_005235.2	976	agG/agC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0045275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	58	949	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	353	695	1	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	286	613	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123229221	123229221	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	18	161	0	ENST00000218089.9:c.3706-1G>A		p.X1236_splice	ENST00000218089	NM_001042749.1	1236																																																																															
ATM	472	MSKCC	GRCh37	11	108192066	108192066	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	83	552	0	ENST00000278616.4:c.6491A>C	p.Glu2164Ala	p.E2164A	ENST00000278616	NM_000051.3	2164	gAg/gCg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39613904	39613904	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	29	419	0	ENST00000262039.4:c.1822A>T	p.Thr608Ser	p.T608S	ENST00000262039	NM_002647.2	608	Aca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	158	415	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	519	847	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	142	467	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	196	305	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	95	230	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944608	40944608	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	172	416	0	ENST00000373198.4:c.1894C>T	p.Arg632Ter	p.R632*	ENST00000373198	NM_133170.3	632	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120502041	120502041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	167	435	0	ENST00000256646.2:c.2000G>A	p.Ser667Asn	p.S667N	ENST00000256646	NM_024408.3	667	aGt/aAt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961328	15961328	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	374	511	0	ENST00000268712.3:c.6061C>T	p.Gln2021Ter	p.Q2021*	ENST00000268712	NM_006311.3	2021	Cag/Tag																																																																														
CALR	811	MSKCC	GRCh37	19	13051056	13051056	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	104	484	0	ENST00000316448.5:c.493-1G>A		p.X165_splice	ENST00000316448	NM_004343.3	165																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138478097	138478097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	230	507	0	ENST00000289153.2:c.89T>C	p.Ile30Thr	p.I30T	ENST00000289153	NM_006219.2	30	aTa/aCa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016325	150016325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	208	419	0	ENST00000253339.5:c.381C>A	p.Asn127Lys	p.N127K	ENST00000253339		127	aaC/aaA																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50479186	50479186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000508-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	66	253	0	ENST00000394963.4:c.34C>T	p.Pro12Ser	p.P12S	ENST00000394963	NM_003076.4	12	Cca/Tca																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	500	509	2	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47004877	47004877	+	5_prime_UTR_variant	5'UTR	SNP	C	C	A			P-0001862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	113	492	0	ENST00000329236.7:c.-133C>A		p.*45*	ENST00000329236	NM_001204466.1																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003963-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1475	237	368	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981761	101981761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			378	146	511	0	ENST00000282441.5:c.182C>G	p.Ser61Trp	p.S61W	ENST00000282441	NM_001130145.2	61	tCg/tGg																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158610	26158610	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			215	86	302	0	ENST00000289316.2:c.213C>G	p.Phe71Leu	p.F71L	ENST00000289316	NM_138720.2	71	ttC/ttG																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165695	118165695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			252	175	283	0	ENST00000369448.3:c.205G>A	p.Val69Ile	p.V69I	ENST00000369448	NM_017709.3	69	Gtc/Atc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164591	47164591	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			68	76	216	0	ENST00000409792.3:c.1535C>G	p.Ser512Ter	p.S512*	ENST00000409792	NM_014159.6	512	tCa/tGa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165153	47165153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			85	81	184	1	ENST00000409792.3:c.973G>T	p.Glu325Ter	p.E325*	ENST00000409792	NM_014159.6	325	Gaa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165678	47165678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			126	182	346	0	ENST00000409792.3:c.448C>T	p.His150Tyr	p.H150Y	ENST00000409792	NM_014159.6	150	Cat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112176386	112176386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			166	89	258	0	ENST00000257430.4:c.5095G>A	p.Glu1699Lys	p.E1699K	ENST00000257430	NM_000038.5	1699	Gag/Aag																																																																														
ATM	472	MSKCC	GRCh37	11	108117778	108117778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			203	97	220	0	ENST00000278616.4:c.989G>T	p.Gly330Val	p.G330V	ENST00000278616	NM_000051.3	330	gGa/gTa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437836	110437836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			282	135	373	0	ENST00000375856.3:c.565C>T	p.Pro189Ser	p.P189S	ENST00000375856	NM_003749.2	189	Ccc/Tcc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68934917	68934917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			255	119	287	0	ENST00000487270.1:c.986C>T	p.Pro329Leu	p.P329L	ENST00000487270	NM_133509.3	329	cCc/cTc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591895	48591895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			118	157	348	0	ENST00000342988.3:c.1058A>G	p.Tyr353Cys	p.Y353C	ENST00000342988	NM_005359.5	353	tAc/tGc																																																																														
AXL	558	MSKCC	GRCh37	19	41749520	41749520	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			317	123	388	0	ENST00000301178.4:c.1446-1G>C		p.X482_splice	ENST00000301178	NM_021913.4	482																																																																															
MSI1	4440	MSKCC	GRCh37	12	120795681	120795681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			378	203	399	0	ENST00000257552.2:c.472G>C	p.Glu158Gln	p.E158Q	ENST00000257552	NM_002442.3	158	Gag/Cag																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158564	26158564	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			390	154	472	0	ENST00000289316.2:c.167C>G	p.Ser56Cys	p.S56C	ENST00000289316	NM_138720.2	56	tCt/tGt																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323253	31323253	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			294	160	419	0	ENST00000412585.2:c.736G>T	p.Glu246Ter	p.E246*	ENST00000412585	NM_005514.6	246	Gag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653843	89653843	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			109	113	188	0	ENST00000371953.3:c.141G>C	p.Arg47Ser	p.R47S	ENST00000371953	NM_000314.4	47	agG/agC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444166	49444166	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			488	251	717	0	ENST00000301067.7:c.3205G>T	p.Glu1069Ter	p.E1069*	ENST00000301067	NM_003482.3	1069	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175859	112175859	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			149	59	157	0	ENST00000257430.4:c.4568G>C	p.Arg1523Thr	p.R1523T	ENST00000257430	NM_000038.5	1523	aGa/aCa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323186	31323186	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004339-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			391	233	533	0	ENST00000412585.2:c.803G>A	p.Trp268Ter	p.W268*	ENST00000412585	NM_005514.6	268	tGg/tAg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243859016	243859016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004411-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	61	251	0	ENST00000263826.5:c.49G>A	p.Glu17Lys	p.E17K	ENST00000263826	NM_005465.4	17	Gaa/Aaa																																																																														
POLE	5426	MSKCC	GRCh37	12	133252690	133252690	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004411-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	86	320	0	ENST00000320574.5:c.1010A>C	p.Glu337Ala	p.E337A	ENST00000320574	NM_006231.2	337	gAa/gCa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81922799	81922799	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004411-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	115	541	0	ENST00000359376.3:c.788A>G	p.Asn263Ser	p.N263S	ENST00000359376	NM_002661.3	263	aAc/aGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0005037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	182	431	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	298	843	6	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106094	8106094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	186	389	0	ENST00000346208.3:c.914G>T	p.Arg305Leu	p.R305L	ENST00000346208		305	cGa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576814	7576883	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGT	GAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGT	-			P-0005037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	154	504	0	ENST00000269305.4:c.963_993+39del		p.X321_splice	ENST00000269305	NM_001126112.2	321																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871029	12871034	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTTC	GAGTTC	AAGTG			P-0005037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	224	456	3	ENST00000228872.4:c.256_261delinsAAGTG	p.Glu86LysfsTer33	p.E86Kfs*33	ENST00000228872	NM_004064.3	86	GAGTTC/AAGTG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005114-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			512	177	445	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259521	55259521	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005114-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			535	181	438	0	ENST00000275493.2:c.2579A>T	p.Lys860Ile	p.K860I	ENST00000275493	NM_005228.3	860	aAa/aTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259542	55259542	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005114-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			523	172	435	0	ENST00000275493.2:c.2600A>C	p.Lys867Thr	p.K867T	ENST00000275493	NM_005228.3	867	aAa/aCa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857538	9857538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005114-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			567	40	325	0	ENST00000330684.3:c.3863G>A	p.Arg1288His	p.R1288H	ENST00000330684	NM_001134407.1	1288	cGt/cAt																																																																														
JUN	3725	MSKCC	GRCh37	1	59248506	59248529	+	inframe_deletion	In_Frame_Del	DEL	CAGGCGCTCCAGCTCGGGCGACGC	CAGGCGCTCCAGCTCGGGCGACGC	-			P-0005114-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			603	130	696	1	ENST00000371222.2:c.214_237del	p.Ala72_Leu79del	p.A72_L79del	ENST00000371222	NM_002228.3	72	GCGTCGCCCGAGCTGGAGCGCCTG/-																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362505	40362505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005114-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			534	72	328	0	ENST00000293328.3:c.1691C>G	p.Pro564Arg	p.P564R	ENST00000293328	NM_012448.3	564	cCa/cGa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259537	55259537	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005114-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			531	170	439	0	ENST00000275493.2:c.2595A>C	p.Glu865Asp	p.E865D	ENST00000275493	NM_005228.3	865	gaA/gaC																																																																														
NBN	4683	MSKCC	GRCh37	8	90949269	90949286	+	inframe_deletion	In_Frame_Del	DEL	GCAAGAGACTCTTCTTTT	GCAAGAGACTCTTCTTTT	-			P-0005114-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			378	20	109	0	ENST00000265433.3:c.2202_2219del	p.Lys735_Ala740del	p.K735_A740del	ENST00000265433	NM_002485.4	734	gcAAAAGAAGAGTCTCTTGCt/gct																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038753	47038753	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005114-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			858	64	606	1	ENST00000329236.7:c.529G>T	p.Asp177Tyr	p.D177Y	ENST00000329236	NM_001204466.1	177	Gat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	72	510	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55955090	55955090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	112	712	1	ENST00000263923.4:c.3455C>T	p.Thr1152Met	p.T1152M	ENST00000263923	NM_002253.2	1152	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	130	776	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729607	41729607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	136	944	6	ENST00000242208.4:c.922C>T	p.Arg308Cys	p.R308C	ENST00000242208	NM_002192.2	308	Cgt/Tgt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687129	37687129	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	136	739	0	ENST00000447079.4:c.4033G>C	p.Glu1345Gln	p.E1345Q	ENST00000447079	NM_015083.1	1345	Gaa/Caa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603128	48603128	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	54	440	0	ENST00000342988.3:c.1429G>T	p.Gly477Ter	p.G477*	ENST00000342988	NM_005359.5	477	Gga/Tga																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30320329	30320330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	118	687	0	ENST00000322652.5:c.1275dup	p.Leu426IlefsTer10	p.L426Ifs*10	ENST00000322652	NM_015355.2	424	caa/cAaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11264672	11264672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	106	436	1	ENST00000361445.4:c.3890C>T	p.Ser1297Leu	p.S1297L	ENST00000361445	NM_004958.3	1297	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099367	27099367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	125	407	2	ENST00000324856.7:c.3604C>T	p.Arg1202Trp	p.R1202W	ENST00000324856	NM_006015.4	1202	Cgg/Tgg																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45795076	45795076	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	134	446	0	ENST00000372115.3:c.1510A>C	p.Ser504Arg	p.S504R	ENST00000372115	NM_001048171.1	504	Agt/Cgt																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72241899	72241899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	147	591	0	ENST00000357731.5:c.491G>T	p.Gly164Val	p.G164V	ENST00000357731	NM_173808.2	164	gGg/gTg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243800978	243800978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	112	488	2	ENST00000263826.5:c.496C>T	p.Arg166Ter	p.R166*	ENST00000263826	NM_005465.4	166	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268784	41268784	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	162	429	0	ENST00000349496.5:c.1022G>C	p.Ser341Thr	p.S341T	ENST00000349496	NM_001904.3	341	aGc/aCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541795	187541795	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	140	454	0	ENST00000441802.2:c.5945A>G	p.Asp1982Gly	p.D1982G	ENST00000441802	NM_005245.3	1982	gAt/gGt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946150	13946150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	346	396	1	ENST00000405192.2:c.946C>T	p.Gln316Ter	p.Q316*	ENST00000405192	NM_001163147.1	316	Cag/Tag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737877	145737877	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200629599		P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	53	328	1	ENST00000428558.2:c.2953G>A	p.Val985Met	p.V985M	ENST00000428558	NM_004260.3	985	Gtg/Atg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739338	145739338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	159	439	2	ENST00000428558.2:c.2032G>A	p.Val678Met	p.V678M	ENST00000428558	NM_004260.3	678	Gtg/Atg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739628	145739628	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	132	408	1	ENST00000428558.2:c.1823A>C	p.His608Pro	p.H608P	ENST00000428558	NM_004260.3	608	cAc/cCc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741542	145741542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	165	476	0	ENST00000428558.2:c.961G>A	p.Gly321Arg	p.G321R	ENST00000428558	NM_004260.3	321	Gga/Aga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98244416	98244416	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	114	379	0	ENST00000331920.6:c.654G>T	p.Gln218His	p.Q218H	ENST00000331920	NM_000264.3	218	caG/caT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343832	118343832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	114	402	0	ENST00000534358.1:c.1958C>T	p.Pro653Leu	p.P653L	ENST00000534358	NM_005933.3	653	cCc/cTc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856128	111856128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	121	273	0	ENST00000341259.2:c.179C>T	p.Ala60Val	p.A60V	ENST00000341259	NM_005475.2	60	gCc/gTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133257863	133257863	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	142	338	0	ENST00000320574.5:c.65A>G	p.Asp22Gly	p.D22G	ENST00000320574	NM_006231.2	22	gAt/gGt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975441	26975441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	108	325	0	ENST00000381527.3:c.1067G>A	p.Arg356Gln	p.R356Q	ENST00000381527	NM_001260.1	356	cGa/cAa																																																																														
MGA	23269	MSKCC	GRCh37	15	41988590	41988590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	190	551	0	ENST00000219905.7:c.1382T>C	p.Leu461Ser	p.L461S	ENST00000219905	NM_001164273.1	461	tTa/tCa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726655	88726655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	97	354	0	ENST00000360948.2:c.389G>A	p.Arg130His	p.R130H	ENST00000360948	NM_001012338.2	130	cGt/cAt																																																																														
BLM	641	MSKCC	GRCh37	15	91293173	91293173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	88	398	0	ENST00000355112.3:c.675G>T	p.Lys225Asn	p.K225N	ENST00000355112	NM_000057.2	225	aaG/aaT																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81954827	81954827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	132	494	0	ENST00000359376.3:c.2260G>A	p.Asp754Asn	p.D754N	ENST00000359376	NM_002661.3	754	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	178	487	1	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864757	37864757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	106	325	0	ENST00000269571.5:c.409C>A	p.Leu137Met	p.L137M	ENST00000269571		137	Ctg/Atg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489486	40489486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	211	509	1	ENST00000264657.5:c.764C>T	p.Pro255Leu	p.P255L	ENST00000264657	NM_139276.2	255	cCg/cTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284969	15284969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	130	350	0	ENST00000263388.2:c.4646C>T	p.Ala1549Val	p.A1549V	ENST00000263388	NM_000435.2	1549	gCg/gTg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478800	57478800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	135	393	0	ENST00000371085.3:c.386A>G	p.Asp129Gly	p.D129G	ENST00000371085	NM_000516.4	129	gAc/gGc																																																																														
AR	367	MSKCC	GRCh37	X	66905965	66905965	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	84	225	0	ENST00000374690.3:c.1882G>T	p.Gly628Ter	p.G628*	ENST00000374690	NM_000044.3	628	Gga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70354958	70354958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	177	253	1	ENST00000374080.3:c.4880G>A	p.Arg1627His	p.R1627H	ENST00000374080		1627	cGc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70357745	70357745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	109	281	0	ENST00000374080.3:c.5996T>C	p.Val1999Ala	p.V1999A	ENST00000374080		1999	gTg/gCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298028	15298029	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	169	467	0	ENST00000263388.2:c.1727dup	p.Thr577HisfsTer46	p.T577Hfs*46	ENST00000263388	NM_000435.2	576	ggc/ggGc																																																																														
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	36	444	1	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	287	438	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	141	481	0	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	141	452	8	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
SYK	6850	MSKCC	GRCh37	9	93606273	93606273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	144	377	4	ENST00000375746.1:c.98delG	p.Gly33AlafsTer2	p.G33Afs*2	ENST00000375746	NM_001174167.1	31	caG/ca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022999	27022999	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	14	32	0	ENST00000324856.7:c.110delG	p.Gly37AlafsTer14	p.G37Afs*14	ENST00000324856	NM_006015.4	35	gcG/gc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074255	8074255	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	176	679	1	ENST00000377482.5:c.404delA	p.Asn135ThrfsTer40	p.N135Tfs*40	ENST00000377482	NM_018948.3	135	aAc/ac																																																																														
APC	324	MSKCC	GRCh37	5	112175101	112175101	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	89	294	0	ENST00000257430.4:c.3814del	p.Ser1272GlnfsTer16	p.S1272Qfs*16	ENST00000257430	NM_000038.5	1270	tgT/tg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244311	41244311	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	93	448	0	ENST00000357654.3:c.3237del	p.Lys1079AsnfsTer2	p.K1079Nfs*2	ENST00000357654	NM_007294.3	1079	aaA/aa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	149	428	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	106	306	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																														
APC	324	MSKCC	GRCh37	5	112102932	112102932	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	112	449	0	ENST00000257430.4:c.271del	p.Met91CysfsTer34	p.M91Cfs*34	ENST00000257430	NM_000038.5	89	tcA/tc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023860	27023861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	44	91	0	ENST00000324856.7:c.971dup	p.Ala325ArgfsTer75	p.A325Rfs*75	ENST00000324856	NM_006015.4	322	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	657	514	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434993	110434993	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	209	347	0	ENST00000375856.3:c.3408C>G	p.Ile1136Met	p.I1136M	ENST00000375856	NM_003749.2	1136	atC/atG																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478103	99478103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	269	483	1	ENST00000268035.6:c.3007C>T	p.Arg1003Trp	p.R1003W	ENST00000268035	NM_000875.3	1003	Cgg/Tgg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40456636	40456636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	397	619	0	ENST00000345506.4:c.1346G>C	p.Ser449Thr	p.S449T	ENST00000345506	NM_003152.3	449	aGt/aCt																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805929	46805929	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	459	503	0	ENST00000290295.7:c.27G>C	p.Leu9Phe	p.L9F	ENST00000290295	NM_006361.5	9	ttG/ttC																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290926	15290926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	82	588	0	ENST00000263388.2:c.3284A>T	p.His1095Leu	p.H1095L	ENST00000263388	NM_000435.2	1095	cAt/cTt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279765	46279765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	422	400	0	ENST00000371998.3:c.3691A>G	p.Arg1231Gly	p.R1231G	ENST00000371998		1231	Aga/Gga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150359	157150359	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0010579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	55	480	0	ENST00000346085.5:c.1543-2A>T		p.X515_splice	ENST00000346085	NM_020732.3	515																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	361	405	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	57	154	0	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112170652	112170652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	180	255	0	ENST00000257430.4:c.1748C>A	p.Ser583Ter	p.S583*	ENST00000257430	NM_000038.5	583	tCa/tAa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193110988	193110988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	41	115	0	ENST00000367435.3:c.521C>G	p.Ser174Cys	p.S174C	ENST00000367435	NM_024529.4	174	tCt/tGt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2977594	2977594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	222	494	0	ENST00000396946.4:c.1090C>T	p.Arg364Cys	p.R364C	ENST00000396946	NM_032415.4	364	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215591	5215591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	262	330	0	ENST00000357368.4:c.4112C>T	p.Pro1371Leu	p.P1371L	ENST00000357368	NM_002850.3	1371	cCg/cTg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784335	9784335	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0012008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	73	408	0	ENST00000377346.4:c.2720T>A	p.Leu907Gln	p.L907Q	ENST00000377346	NM_005026.3	907	cTg/cAg																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363358	40363388	+	frameshift_variant	Frame_Shift_Del	DEL	CTACAGGTGGGGGACTCACAATCTCTTCATC	CTACAGGTGGGGGACTCACAATCTCTTCATC	-			P-0012008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			685	95	592	0	ENST00000397332.2:c.841_871del	p.Asp281LysfsTer20	p.D281Kfs*20	ENST00000397332	NM_001033082.2	281	GATGAAGAGATTGTGAGTCCCCCACCTGTAGaa/aa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435408	121435422	+	inframe_deletion	In_Frame_Del	DEL	CAGAGCCATGTGACC	CAGAGCCATGTGACC	-			P-0012008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			863	83	631	0	ENST00000257555.6:c.1448_1462del	p.His483_Ser487del	p.H483_S487del	ENST00000257555		481	CAGAGCCATGTGACC/-																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10267166	10267166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	129	341	0	ENST00000340748.4:c.1252C>T	p.His418Tyr	p.H418Y	ENST00000340748		418	Cac/Tac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094832	11094842	+	frameshift_variant	Frame_Shift_Del	DEL	CCACTCCAGAC	CCACTCCAGAC	-			P-0012008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			713	144	620	0	ENST00000344626.4:c.9_19del	p.Asp5GlyfsTer23	p.D5Gfs*23	ENST00000344626	NM_003072.3	2	tCCACTCCAGAC/t																																																																														
REL	5966	MSKCC	GRCh37	2	61118833	61118833	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	194	167	0	ENST00000295025.8:c.26A>G	p.Tyr9Cys	p.Y9C	ENST00000295025	NM_002908.2	9	tAt/tGt																																																																														
REL	5966	MSKCC	GRCh37	2	61149000	61149000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	107	393	0	ENST00000295025.8:c.1190G>A	p.Gly397Glu	p.G397E	ENST00000295025	NM_002908.2	397	gGa/gAa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39744029	39744029	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	122	356	0	ENST00000361337.2:c.1657C>G	p.Leu553Val	p.L553V	ENST00000361337	NM_003286.2	553	Cta/Gta																																																																														
TAP1	6890	MSKCC	GRCh37	6	32820905	32820905	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			764	113	680	0	ENST00000354258.4:c.689G>C	p.Gly230Ala	p.G230A	ENST00000354258	NM_000593.5	230	gGa/gCa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141568640	141568640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			780	83	527	0	ENST00000220592.5:c.822G>C	p.Gln274His	p.Q274H	ENST00000220592	NM_012154.3	274	caG/caC																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030436	47030436	+	intron_variant	Intron	SNP	G	G	C			P-0012008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	99	316	0	ENST00000329236.7:c.201+1539G>C		p.*67*	ENST00000329236	NM_001204466.1																																																																																
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013015-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	539	857	1	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
KDR	3791	MSKCC	GRCh37	4	55958804	55958804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013015-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	215	617	0	ENST00000263923.4:c.3049G>C	p.Glu1017Gln	p.E1017Q	ENST00000263923	NM_002253.2	1017	Gag/Cag																																																																														
APC	324	MSKCC	GRCh37	5	112090645	112090645	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013015-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	189	455	0	ENST00000257430.4:c.58A>T	p.Asn20Tyr	p.N20Y	ENST00000257430	NM_000038.5	20	Aac/Tac																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484337	50484338	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0013015-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			586	219	548	0	ENST00000394963.4:c.1097_1098insAA	p.Met366IlefsTer36	p.M366Ifs*36	ENST00000394963	NM_003076.4	366	atg/atAAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952139	178952148	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCATTGAA	ATGCATTGAA	TG			P-0013015-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	431	334	1	ENST00000263967.3:c.3194_3203delinsTG	p.His1065LeufsTer5	p.H1065Lfs*5	ENST00000263967	NM_006218.2	1065	cATGCATTGAAc/cTGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			671	165	682	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0013855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	244	590	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609954	81609954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	95	381	0	ENST00000298171.2:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000298171	NM_000369.2	518	Gag/Aag																																																																														
EED	8726	MSKCC	GRCh37	11	85961442	85961447	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	GAAGTC	GAAGTC	-			P-0013855-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	69	394	0	ENST00000263360.6:c.219_224del	p.Trp73_Ser75delinsTer	p.W73_S75delins*	ENST00000263360	NM_003797.3	73	tgGAAGTCa/tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	783	979	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436940	49436941	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCACTGA			P-0015033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	204	835	0	ENST00000301067.7:c.5562_5563insTCAGTGC	p.Pro1855SerfsTer7	p.P1855Sfs*7	ENST00000301067	NM_003482.3	1854	-/TCAGTGC																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153259016	153259063	+	inframe_deletion	In_Frame_Del	DEL	GTTTTACTTGTGTTGGTTCACAACTATCAATGAGTTCATCTAAAGCAA	GTTTTACTTGTGTTGGTTCACAACTATCAATGAGTTCATCTAAAGCAA	-			P-0015033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	69	426	0	ENST00000281708.4:c.752_799del	p.Leu251_Lys266del	p.L251_K266del	ENST00000281708	NM_033632.3	251	cTTGCTTTAGATGAACTCATTGATAGTTGTGAACCAACACAAGTAAAACat/cat																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858361	27858378	+	inframe_deletion	In_Frame_Del	DEL	GCGCTGAAATGGCAGTTT	GCGCTGAAATGGCAGTTT	-			P-0015033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	168	573	0	ENST00000359303.2:c.193_210del	p.Lys65_Arg70del	p.K65_R70del	ENST00000359303	NM_003535.2	65	AAACTGCCATTTCAGCGC/-																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151848544	151848550	+	frameshift_variant	Frame_Shift_Del	DEL	GATCTTT	GATCTTT	-			P-0015033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	145	581	0	ENST00000262189.6:c.12643_12649del	p.Lys4215Ter	p.K4215*	ENST00000262189	NM_170606.2	4215	AAAGATCtg/tg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738308	145738308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	308	1095	2	ENST00000428558.2:c.2677C>T	p.Pro893Ser	p.P893S	ENST00000428558	NM_004260.3	893	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	521	557	0	ENST00000269305.4:c.1010G>C	p.Arg337Pro	p.R337P	ENST00000269305	NM_001126112.2	337	cGc/cCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948133	178948133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	211	237	0	ENST00000263967.3:c.2905C>A	p.Gln969Lys	p.Q969K	ENST00000263967	NM_006218.2	969	Caa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	184	304	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	323	578	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
YES1	7525	MSKCC	GRCh37	18	739784	739784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	101	484	0	ENST00000314574.4:c.1088G>T	p.Gly363Val	p.G363V	ENST00000314574	NM_005433.3	363	gGa/gTa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228281	53228281	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	289	495	0	ENST00000375401.3:c.2121T>G	p.Cys707Trp	p.C707W	ENST00000375401	NM_004187.3	707	tgT/tgG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	374	616	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	32	380	0	ENST00000371953.3:c.376G>A	p.Ala126Thr	p.A126T	ENST00000371953	NM_000314.4	126	Gct/Act																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105804	27105805	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0018026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	157	318	0	ENST00000324856.7:c.5415_5416delGAinsTT	p.Ile1806Phe	p.I1806F	ENST00000324856	NM_006015.4	1805	ctGAtc/ctTTtc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	427594	427594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	222	429	0	ENST00000399788.2:c.2575C>T	p.Arg859Cys	p.R859C	ENST00000399788	NM_001042603.1	859	Cgt/Tgt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434042	121434089	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGACACTGCTTCCCTCTCCAGGTGTGCGCTATGGACAGCCTGCGAC	CAGGACACTGCTTCCCTCTCCAGGTGTGCGCTATGGACAGCCTGCGAC	-			P-0018026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	202	287	0	ENST00000257555.6:c.956-20_983delGACACTGCTTCCCTCTCCAGGTGTGCGCTATGGACAGCCTGCGACCAG		p.X319_splice	ENST00000257555		319																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15290968	15290969	+	missense_variant	Missense_Mutation	DNP	CA	CA	TG			P-0018026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	63	736	0	ENST00000263388.2:c.3241_3242invTG	p.Cys1081His	p.C1081H	ENST00000263388	NM_000435.2	1081	TGt/CAt																																																																														
ALK	238	MSKCC	GRCh37	2	29450540	29450540	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0018026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	462	464	0	ENST00000389048.3:c.2816-2A>C		p.X939_splice	ENST00000389048	NM_004304.4	939																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444382	50444382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	109	332	0	ENST00000331340.3:c.312G>C	p.Leu104Phe	p.L104F	ENST00000331340	NM_006060.4	104	ttG/ttC																																																																														
HGF	3082	MSKCC	GRCh37	7	81355317	81355327	+	protein_altering_variant	In_Frame_Del	DEL	AATTTTCTCGT	AATTTTCTCGT	CCCTATTG			P-0018026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	82	249	1	ENST00000222390.5:c.1047_1057delACGAGAAAATTinsCAATAGGG	p.Arg350_Tyr353delinsAsnArgAsp	p.R350_Y353delinsNRD	ENST00000222390	NM_000601.4	349	ctACGAGAAAATTac/ctCAATAGGGac																																																																														
BRAF	673	MSKCC	GRCh37	7	140624404	140624427	+	inframe_deletion	In_Frame_Del	DEL	CGGCGCCGGCGCCGGCGCCGGCCT	CGGCGCCGGCGCCGGCGCCGGCCT	-			P-0018026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	16	212	0	ENST00000288602.6:c.77_100delAGGCCGGCGCCGGCGCCGGCGCCG	p.Glu26_Ala33del	p.E26_A33del	ENST00000288602	NM_004333.4	26	gAGGCCGGCGCCGGCGCCGGCGCCGcg/gcg																																																																														
CDH1	999	MSKCC	GRCh37	16	68847283	68847283	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	70	268	0	ENST00000261769.5:c.1205A>T	p.Asp402Val	p.D402V	ENST00000261769	NM_004360.3	402	gAt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	182	231	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
BLM	641	MSKCC	GRCh37	15	91292925	91292942	+	inframe_deletion	In_Frame_Del	DEL	TCTTCACCAGATTCTTTA	TCTTCACCAGATTCTTTA	-			P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	303	306	0	ENST00000355112.3:c.427_444del	p.Ser144_Ser149del	p.S144_S149del	ENST00000355112	NM_000057.2	143	TCTTCACCAGATTCTTTA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	456	360	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42798773	42798773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	326	357	0	ENST00000575354.2:c.4345G>A	p.Val1449Met	p.V1449M	ENST00000575354	NM_015125.3	1449	Gtg/Atg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280813	41280813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	140	140	0	ENST00000349496.5:c.2326T>C	p.Trp776Arg	p.W776R	ENST00000349496	NM_001904.3	776	Tgg/Cgg																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	61	145	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	126	171	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
XIAP	331	MSKCC	GRCh37	X	123026612	123026612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	99	291	2	ENST00000355640.3:c.1088C>A	p.Thr363Asn	p.T363N	ENST00000355640		363	aCt/aAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	119	646	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	38	315	1	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976727	2976727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	179	659	1	ENST00000396946.4:c.1285G>A	p.Val429Ile	p.V429I	ENST00000396946	NM_032415.4	429	Gtc/Atc																																																																														
ATM	472	MSKCC	GRCh37	11	108196917	108196917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	53	574	1	ENST00000278616.4:c.6940C>T	p.Gln2314Ter	p.Q2314*	ENST00000278616	NM_000051.3	2314	Caa/Taa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911591	114911592	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAG			P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	221	839	0	ENST00000543371.1:c.1112_1115dup	p.Cys372Ter	p.C372*	ENST00000543371	NM_001198531.1	370	gct/gcTGAGt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813882	50813882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1264	113	779	0	ENST00000398568.2:c.1436C>G	p.Pro479Arg	p.P479R	ENST00000398568	NM_001042412.1	479	cCt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112174597	112174597	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0027881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	248	644	0	ENST00000257430.4:c.3306C>G	p.Tyr1102Ter	p.Y1102*	ENST00000257430	NM_000038.5	1102	taC/taG																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	364	494	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
CBL	867	MSKCC	GRCh37	11	119155995	119155995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	290	625	1	ENST00000264033.4:c.1660G>T	p.Val554Phe	p.V554F	ENST00000264033	NM_005188.3	554	Gtt/Ttt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926856	112926856	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	95	583	0	ENST00000351677.2:c.1476A>C	p.Lys492Asn	p.K492N	ENST00000351677	NM_002834.3	492	aaA/aaC																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781381	3781381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	292	637	0	ENST00000262367.5:c.4984G>A	p.Asp1662Asn	p.D1662N	ENST00000262367	NM_004380.2	1662	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857363	9857363	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	31	401	2	ENST00000330684.3:c.4038A>T	p.Gln1346His	p.Q1346H	ENST00000330684	NM_001134407.1	1346	caA/caT																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657693	37657715	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTAACATAGTAACCAAATAAGAT	GTAACATAGTAACCAAATAAGAT	-			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	228	377	0	ENST00000447079.4:c.2609+1_2609+23del		p.X870_splice	ENST00000447079	NM_015083.1	870																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198264870	198264870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	87	485	0	ENST00000335508.6:c.2922G>T	p.Leu974Phe	p.L974F	ENST00000335508	NM_012433.2	974	ttG/ttT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187445	32187445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	238	595	0	ENST00000375023.3:c.1434G>T	p.Glu478Asp	p.E478D	ENST00000375023	NM_004557.3	478	gaG/gaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	210	333	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0029338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	278	366	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0029338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	516	532	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112173627	112173627	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0029338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	114	263	0	ENST00000257430.4:c.2336T>A	p.Leu779Ter	p.L779*	ENST00000257430	NM_000038.5	779	tTa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112175765	112175765	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	159	251	0	ENST00000257430.4:c.4474delG	p.Ala1492ProfsTer15	p.A1492Pfs*15	ENST00000257430	NM_000038.5	1492	Gcc/cc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470573	25470573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	161	558	1	ENST00000264709.3:c.901C>T	p.Arg301Trp	p.R301W	ENST00000264709	NM_175629.2	301	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	142	303	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
EP300	2033	MSKCC	GRCh37	22	41536164	41536164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	157	396	0	ENST00000263253.7:c.1781C>T	p.Thr594Met	p.T594M	ENST00000263253	NM_001429.3	594	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	196	537	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	66	238	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	19	561	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	30	112	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	57	287	2	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	172	531	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133202313	133202313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	149	474	1	ENST00000320574.5:c.6575C>T	p.Ala2192Val	p.A2192V	ENST00000320574	NM_006231.2	2192	gCg/gTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440855	52440855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	35	433	0	ENST00000460680.1:c.649G>A	p.Ala217Thr	p.A217T	ENST00000460680	NM_004656.3	217	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	147	408	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TET1	80312	MSKCC	GRCh37	10	70333863	70333863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	85	341	1	ENST00000373644.4:c.1768C>T	p.Arg590Ter	p.R590*	ENST00000373644	NM_030625.2	590	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299832	15299832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	38	524	1	ENST00000263388.2:c.1346G>A	p.Arg449His	p.R449H	ENST00000263388	NM_000435.2	449	cGc/cAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	472142	472142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	146	358	0	ENST00000399788.2:c.659G>A	p.Arg220His	p.R220H	ENST00000399788	NM_001042603.1	220	cGt/cAt																																																																														
AR	367	MSKCC	GRCh37	X	66766276	66766276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	17	158	0	ENST00000374690.3:c.1288G>A	p.Ala430Thr	p.A430T	ENST00000374690	NM_000044.3	430	Gcc/Acc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131927019	131927019	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140333740		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	78	303	0	ENST00000265335.6:c.1556G>A	p.Arg519His	p.R519H	ENST00000265335		519	cGt/cAt																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428326	33428326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	156	436	0	ENST00000335858.7:c.461G>A	p.Arg154His	p.R154H	ENST00000335858	NM_133629.2	154	cGc/cAc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90633818	90633818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	142	520	0	ENST00000330062.3:c.266G>A	p.Arg89His	p.R89H	ENST00000330062	NM_002168.2	89	cGt/cAt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	128	480	0	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98215787	98215787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	174	357	1	ENST00000331920.6:c.3422C>T	p.Ala1141Val	p.A1141V	ENST00000331920	NM_000264.3	1141	gCg/gTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133219579	133219579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	21	372	0	ENST00000320574.5:c.4555C>T	p.Arg1519Cys	p.R1519C	ENST00000320574	NM_006231.2	1519	Cgc/Tgc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435631	149435631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	34	497	2	ENST00000286301.3:c.2512G>A	p.Val838Ile	p.V838I	ENST00000286301	NM_005211.3	838	Gtc/Atc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448564	89448564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	141	426	0	ENST00000336596.2:c.1528C>T	p.Arg510Ter	p.R510*	ENST00000336596	NM_005233.5	510	Cga/Tga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	66	282	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739479	145739479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	140	443	0	ENST00000428558.2:c.1891C>T	p.Arg631Cys	p.R631C	ENST00000428558	NM_004260.3	631	Cgc/Tgc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562477	21562477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	14	128	0	ENST00000382592.4:c.1442C>T	p.Ala481Val	p.A481V	ENST00000382592	NM_014572.2	481	gCg/gTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066534	94066534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	106	342	1	ENST00000369303.4:c.1225G>A	p.Ala409Thr	p.A409T	ENST00000369303	NM_004440.3	409	Gct/Act																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	170	319	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117714409	117714409	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	35	371	0	ENST00000368508.3:c.1240del	p.Ile414LeufsTer14	p.I414Lfs*14	ENST00000368508	NM_002944.2	414	Att/tt																																																																														
NF1	4763	MSKCC	GRCh37	17	29552222	29552222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	125	412	0	ENST00000358273.4:c.1955G>A	p.Arg652His	p.R652H	ENST00000358273	NM_001042492.2	652	cGt/cAt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477160	67477160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	134	389	1	ENST00000327367.4:c.967C>T	p.Arg323Cys	p.R323C	ENST00000327367	NM_005902.3	323	Cgc/Tgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098591	11098591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	165	437	0	ENST00000344626.4:c.1109G>A	p.Arg370His	p.R370H	ENST00000344626	NM_003072.3	370	cGc/cAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95595941	95595941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	101	392	0	ENST00000343455.3:c.602G>A	p.Arg201His	p.R201H	ENST00000343455	NM_177438.2	201	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831953	72831953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	60	580	0	ENST00000268489.5:c.4628G>A	p.Arg1543His	p.R1543H	ENST00000268489	NM_006885.3	1543	cGc/cAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286237	66286238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	89	337	0	ENST00000273854.3:c.1448dup	p.Asn483LysfsTer21	p.N483Kfs*21	ENST00000273854	NM_004439.5	483	aac/aaAc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641487	23641487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	143	564	0	ENST00000261584.4:c.1988G>A	p.Arg663His	p.R663H	ENST00000261584	NM_024675.3	663	cGc/cAc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090524	71090524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	82	276	0	ENST00000318789.4:c.824C>T	p.Ala275Val	p.A275V	ENST00000318789	NM_032682.5	275	gCc/gTc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740840	58740840	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149137187		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	157	417	0	ENST00000305921.3:c.1745G>A	p.Arg582His	p.R582H	ENST00000305921	NM_003620.3	582	cGc/cAc																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	86	293	1	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041518	14041518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	98	328	1	ENST00000311895.7:c.2065C>T	p.Arg689Cys	p.R689C	ENST00000311895	NM_005236.2	689	Cgt/Tgt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	105	472	1	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42839743	42839743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	179	503	1	ENST00000398585.3:c.1496G>A	p.Gly499Asp	p.G499D	ENST00000398585	NM_001135099.1	499	gGt/gAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134230	11134230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	139	485	1	ENST00000344626.4:c.2896C>T	p.Arg966Trp	p.R966W	ENST00000344626	NM_003072.3	966	Cgg/Tgg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134885807	134885807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	113	424	0	ENST00000398015.3:c.1718C>T	p.Ala573Val	p.A573V	ENST00000398015	NM_004441.4	573	gCt/gTt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505508	25505508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	34	472	2	ENST00000264709.3:c.250G>A	p.Ala84Thr	p.A84T	ENST00000264709	NM_175629.2	84	Gcc/Acc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205667	128205667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	111	431	0	ENST00000341105.2:c.208G>A	p.Val70Ile	p.V70I	ENST00000341105	NM_032638.4	70	Gtc/Atc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112422	115112422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	135	395	0	ENST00000257566.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000257566	NM_016569.3	440	Gcc/Acc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955111	17955112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	163	571	0	ENST00000458235.1:c.115dupC	p.Gln39ProfsTer13	p.Q39Pfs*13	ENST00000458235	NM_000215.3	39	cag/cCag																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631917	90631918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	167	482	5	ENST00000330062.3:c.435dupG	p.Thr146AspfsTer126	p.T146Dfs*126	ENST00000330062	NM_002168.2	145	-/G																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228613001	228613001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	95	294	0	ENST00000366696.1:c.26G>A	p.Arg9His	p.R9H	ENST00000366696	NM_003493.2	9	cGc/cAc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481461	20481461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	75	245	0	ENST00000346618.3:c.530C>T	p.Thr177Met	p.T177M	ENST00000346618	NM_001949.4	177	aCg/aTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88671959	88671959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	94	321	1	ENST00000360948.2:c.1211C>T	p.Thr404Met	p.T404M	ENST00000360948	NM_001012338.2	404	aCg/aTg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24167550	24167550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	157	446	1	ENST00000263121.7:c.934G>A	p.Ala312Thr	p.A312T	ENST00000263121	NM_003073.3	312	Gca/Aca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277225	41277225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	20	239	0	ENST00000349496.5:c.1694G>A	p.Arg565His	p.R565H	ENST00000349496	NM_001904.3	565	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101690	27101690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	145	627	1	ENST00000324856.7:c.4972C>T	p.Arg1658Trp	p.R1658W	ENST00000324856	NM_006015.4	1658	Cgg/Tgg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217306	123217306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	169	245	0	ENST00000218089.9:c.2960C>T	p.Pro987Leu	p.P987L	ENST00000218089	NM_001042749.1	987	cCg/cTg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729844	41729844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	79	301	0	ENST00000242208.4:c.685C>T	p.Arg229Trp	p.R229W	ENST00000242208	NM_002192.2	229	Cgg/Tgg																																																																														
PARP1	142	MSKCC	GRCh37	1	226552710	226552710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	102	306	0	ENST00000366794.5:c.2651C>T	p.Ala884Val	p.A884V	ENST00000366794	NM_001618.3	884	gCg/gTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129418	64129418	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	184	535	1	ENST00000334205.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000334205	NM_003942.2	284	Cga/Tga																																																																														
FANCC	2176	MSKCC	GRCh37	9	97912349	97912349	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182879858		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	131	311	2	ENST00000289081.3:c.542C>T	p.Ala181Val	p.A181V	ENST00000289081	NM_000136.2	181	gCg/gTg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18277075	18277075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	132	419	0	ENST00000222254.8:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000222254	NM_005027.3	508	Cgc/Tgc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181431	185181431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	142	395	0	ENST00000265026.3:c.1372C>T	p.Arg458Cys	p.R458C	ENST00000265026	NM_004721.4	458	Cgc/Tgc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911260	29911260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	16	280	1	ENST00000376809.5:c.559A>G	p.Thr187Ala	p.T187A	ENST00000376809	NM_002116.7	187	Acg/Gcg																																																																														
MITF	4286	MSKCC	GRCh37	3	70014298	70014298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142372494		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	135	451	0	ENST00000352241.4:c.1462G>A	p.Gly488Ser	p.G488S	ENST00000352241	NM_198159.2	488	Ggt/Agt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868072	56868072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	26	316	0	ENST00000308159.5:c.1570C>T	p.Arg524Trp	p.R524W	ENST00000308159	NM_014669.4	524	Cgg/Tgg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509661	106509661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	39	444	1	ENST00000359195.3:c.1655G>A	p.Arg552His	p.R552H	ENST00000359195	NM_002649.2	552	cGc/cAc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095913	178095914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	105	352	2	ENST00000397062.3:c.1417dup	p.Ile473AsnfsTer3	p.I473Nfs*3	ENST00000397062	NM_006164.4	473	atc/aAtc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601228	28601228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	151	379	0	ENST00000241453.7:c.2204C>T	p.Ser735Phe	p.S735F	ENST00000241453	NM_004119.2	735	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219934	36219934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	32	534	0	ENST00000222270.7:c.4736G>A	p.Arg1579His	p.R1579H	ENST00000222270	NM_014727.1	1579	cGt/cAt																																																																														
HRAS	3265	MSKCC	GRCh37	11	533839	533839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	56	552	0	ENST00000311189.7:c.217C>T	p.Arg73Cys	p.R73C	ENST00000311189		73	Cgc/Tgc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46727002	46727002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	120	365	1	ENST00000371975.4:c.836G>A	p.Arg279His	p.R279H	ENST00000371975	NM_003579.3	279	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52705201	52705201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	104	287	1	ENST00000322088.6:c.83G>A	p.Arg28His	p.R28H	ENST00000322088	NM_014225.5	28	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939413	71939413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148394356		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	70	582	0	ENST00000298229.2:c.268C>T	p.Arg90Cys	p.R90C	ENST00000298229	NM_001567.3	90	Cgc/Tgc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45396936	45396936	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	22	224	0	ENST00000262160.6:c.237-1G>A		p.X79_splice	ENST00000262160	NM_005901.5	79																																																																															
RET	5979	MSKCC	GRCh37	10	43606811	43606811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	164	576	2	ENST00000355710.3:c.1420C>T	p.Arg474Trp	p.R474W	ENST00000355710	NM_020975.4	474	Cgg/Tgg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86686625	86686626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	81	260	0	ENST00000274376.6:c.3074dup	p.Leu1026AlafsTer20	p.L1026Afs*20	ENST00000274376	NM_002890.2	1023	-/A																																																																														
NF1	4763	MSKCC	GRCh37	17	29550577	29550577	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	88	253	0	ENST00000358273.4:c.1841del	p.Asn614IlefsTer17	p.N614Ifs*17	ENST00000358273	NM_001042492.2	613	Aaa/aa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574405	95574405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	101	239	1	ENST00000343455.3:c.2462G>A	p.Arg821His	p.R821H	ENST00000343455	NM_177438.2	821	cGc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524960	187524960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	168	502	0	ENST00000441802.2:c.10720G>A	p.Val3574Met	p.V3574M	ENST00000441802	NM_005245.3	3574	Gtg/Atg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753276	42753276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	49	563	0	ENST00000222329.4:c.988G>A	p.Ala330Thr	p.A330T	ENST00000222329	NM_006494.2	330	Gcc/Acc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112326	115112326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	60	149	0	ENST00000257566.3:c.1414G>A	p.Ala472Thr	p.A472T	ENST00000257566	NM_016569.3	472	Gcg/Acg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716301	52716301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	51	419	0	ENST00000322088.6:c.745C>T	p.Arg249Cys	p.R249C	ENST00000322088	NM_014225.5	249	Cgc/Tgc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94911882	94911882	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	170	452	0	ENST00000536441.1:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000536441	NM_144665.3	350	Cga/Tga																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520202	176520202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	196	596	1	ENST00000292408.4:c.1121C>T	p.Ala374Val	p.A374V	ENST00000292408	NM_213647.1	374	gCg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836295	151836295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	149	360	1	ENST00000262189.6:c.14510C>T	p.Ala4837Val	p.A4837V	ENST00000262189	NM_170606.2	4837	gCg/gTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712907	43712907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	140	454	0	ENST00000382044.4:c.4277G>A	p.Gly1426Asp	p.G1426D	ENST00000382044	NM_001141980.1	1426	gGc/gAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023326	27023327	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	55	163	0	ENST00000324856.7:c.437dup	p.Ala147SerfsTer253	p.A147Sfs*253	ENST00000324856	NM_006015.4	144	-/C																																																																														
CARM1	10498	MSKCC	GRCh37	19	11032374	11032374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	46	525	0	ENST00000327064.4:c.1768G>A	p.Ala590Thr	p.A590T	ENST00000327064	NM_199141.1	590	Gcc/Acc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164838	36164838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	145	571	0	ENST00000300305.3:c.1037G>A	p.Arg346His	p.R346H	ENST00000300305		346	cGc/cAc																																																																														
ATM	472	MSKCC	GRCh37	11	108205805	108205805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	34	352	0	ENST00000278616.4:c.8120C>T	p.Ser2707Phe	p.S2707F	ENST00000278616	NM_000051.3	2707	tCc/tTc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093411	30093411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201154555		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	126	418	1	ENST00000331968.5:c.1852C>T	p.Arg618Ter	p.R618*	ENST00000331968	NM_002742.2	618	Cga/Tga																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9781907	9781907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	131	503	2	ENST00000377346.4:c.2044C>A	p.Leu682Met	p.L682M	ENST00000377346	NM_005026.3	682	Ctg/Atg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298063	11298063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	123	406	0	ENST00000361445.4:c.2045G>A	p.Arg682His	p.R682H	ENST00000361445	NM_004958.3	682	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260692	16260692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201348264		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	149	506	0	ENST00000375759.3:c.7957G>A	p.Ala2653Thr	p.A2653T	ENST00000375759	NM_015001.2	2653	Gca/Aca																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262304	16262304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	49	176	0	ENST00000375759.3:c.9569C>T	p.Thr3190Ile	p.T3190I	ENST00000375759	NM_015001.2	3190	aCt/aTt																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363267	40363267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	166	421	2	ENST00000397332.2:c.962G>A	p.Arg321His	p.R321H	ENST00000397332	NM_001033082.2	321	cGc/cAc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797401	45797401	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35352891		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	145	530	0	ENST00000372115.3:c.1076C>T	p.Ala359Val	p.A359V	ENST00000372115	NM_001048171.1	359	gCc/gTc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400916	72400916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	92	354	0	ENST00000357731.5:c.255G>A	p.Trp85Ter	p.W85*	ENST00000357731	NM_173808.2	85	tgG/tgA																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166418	118166418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	108	371	1	ENST00000369448.3:c.928C>T	p.Leu310Phe	p.L310F	ENST00000369448	NM_017709.3	310	Ctt/Ttt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120478223	120478223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	96	319	0	ENST00000256646.2:c.3527T>C	p.Val1176Ala	p.V1176A	ENST00000256646	NM_024408.3	1176	gTc/gCc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844722	156844722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	179	597	2	ENST00000524377.1:c.1276G>A	p.Val426Ile	p.V426I	ENST00000524377	NM_002529.3	426	Gtc/Atc																																																																														
FH	2271	MSKCC	GRCh37	1	241683013	241683013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	77	411	0	ENST00000366560.3:c.10G>A	p.Ala4Thr	p.A4T	ENST00000366560	NM_000143.3	4	Gca/Aca																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246093240	246093240	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	110	371	0	ENST00000388985.4:c.532-1G>A		p.X178_splice	ENST00000388985		178																																																																															
TET1	80312	MSKCC	GRCh37	10	70450663	70450663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	119	420	0	ENST00000373644.4:c.5503C>T	p.Pro1835Ser	p.P1835S	ENST00000373644	NM_030625.2	1835	Cca/Tca																																																																														
HRAS	3265	MSKCC	GRCh37	11	532716	532716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	151	545	0	ENST00000311189.7:c.490C>T	p.Arg164Trp	p.R164W	ENST00000311189		164	Cgg/Tgg																																																																														
PGR	5241	MSKCC	GRCh37	11	100933244	100933244	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	37	423	0	ENST00000325455.5:c.2146A>G	p.Thr716Ala	p.T716A	ENST00000325455	NM_001202474.3	716	Aca/Gca																																																																														
ATM	472	MSKCC	GRCh37	11	108098537	108098537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	117	249	0	ENST00000278616.4:c.107A>G	p.Asp36Gly	p.D36G	ENST00000278616	NM_000051.3	36	gAt/gGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362551	118362551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	128	350	0	ENST00000534358.1:c.4912G>A	p.Ala1638Thr	p.A1638T	ENST00000534358	NM_005933.3	1638	Gcc/Acc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	422242	422242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	134	456	1	ENST00000399788.2:c.3016G>A	p.Ala1006Thr	p.A1006T	ENST00000399788	NM_001042603.1	1006	Gct/Act																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231492	46231492	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	83	272	0	ENST00000334344.6:c.1330+2T>C		p.X444_splice	ENST00000334344	NM_152641.2	444																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244743	46244743	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	152	449	0	ENST00000334344.6:c.2837T>A	p.Ile946Asn	p.I946N	ENST00000334344	NM_152641.2	946	aTt/aAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420090	49420090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	25	431	1	ENST00000301067.7:c.15659G>A	p.Arg5220His	p.R5220H	ENST00000301067	NM_003482.3	5220	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420657	49420657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	105	428	0	ENST00000301067.7:c.15092G>A	p.Arg5031His	p.R5031H	ENST00000301067	NM_003482.3	5031	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442973	49442973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	153	436	0	ENST00000301067.7:c.3935G>A	p.Arg1312His	p.R1312H	ENST00000301067	NM_003482.3	1312	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445592	49445592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	153	777	1	ENST00000301067.7:c.1874G>A	p.Arg625His	p.R625H	ENST00000301067	NM_003482.3	625	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447305	49447305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	156	456	0	ENST00000301067.7:c.793C>T	p.Arg265Cys	p.R265C	ENST00000301067	NM_003482.3	265	Cgt/Tgt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856566	111856566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	13	177	0	ENST00000341259.2:c.617C>T	p.Ala206Val	p.A206V	ENST00000341259	NM_005475.2	206	gCc/gTc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856569	111856569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	47	174	0	ENST00000341259.2:c.620A>G	p.Asp207Gly	p.D207G	ENST00000341259	NM_005475.2	207	gAc/gGc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112230	115112230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	83	286	0	ENST00000257566.3:c.1510G>A	p.Ala504Thr	p.A504T	ENST00000257566	NM_016569.3	504	Gcc/Acc																																																																														
SETD8	0	MSKCC	GRCh37	12	123879761	123879761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	18	180	1	ENST00000330479.4:c.457G>A	p.Ala153Thr	p.A153T	ENST00000330479	NM_020382.3	153	Gcc/Acc																																																																														
POLE	5426	MSKCC	GRCh37	12	133250204	133250204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	134	458	0	ENST00000320574.5:c.1316T>C	p.Leu439Pro	p.L439P	ENST00000320574	NM_006231.2	439	cTa/cCa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28903752	28903752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	89	369	0	ENST00000282397.4:c.2707G>A	p.Gly903Arg	p.G903R	ENST00000282397	NM_002019.4	903	Ggg/Agg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434772	110434772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	141	595	0	ENST00000375856.3:c.3629C>T	p.Ala1210Val	p.A1210V	ENST00000375856	NM_003749.2	1210	gCg/gTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435255	110435255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	77	252	0	ENST00000375856.3:c.3146C>T	p.Ala1049Val	p.A1049V	ENST00000375856	NM_003749.2	1049	gCc/gTc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066960	30066960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	90	331	0	ENST00000331968.5:c.2171A>G	p.Lys724Arg	p.K724R	ENST00000331968	NM_002742.2	724	aAa/aGa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986629	36986629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	12	156	0	ENST00000354822.5:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000354822	NM_001079668.2	354	Gca/Aca																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986947	36986947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	163	439	0	ENST00000354822.5:c.742C>T	p.Arg248Cys	p.R248C	ENST00000354822	NM_001079668.2	248	Cgc/Tgc																																																																														
AKT1	207	MSKCC	GRCh37	14	105239893	105239893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	140	428	1	ENST00000349310.3:c.727C>T	p.Arg243Cys	p.R243C	ENST00000349310	NM_001014432.1	243	Cgt/Tgt																																																																														
AKT1	207	MSKCC	GRCh37	14	105243056	105243056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	170	577	1	ENST00000349310.3:c.227G>A	p.Arg76His	p.R76H	ENST00000349310	NM_001014432.1	76	cGc/cAc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707942	43707942	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	196	524	0	ENST00000382044.4:c.4939T>G	p.Ser1647Ala	p.S1647A	ENST00000382044	NM_001141980.1	1647	Tcc/Gcc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457360	67457360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	46	470	0	ENST00000327367.4:c.334G>A	p.Ala112Thr	p.A112T	ENST00000327367	NM_005902.3	112	Gcc/Acc																																																																														
CD276	80381	MSKCC	GRCh37	15	73994796	73994796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	125	460	1	ENST00000318443.5:c.280G>A	p.Ala94Thr	p.A94T	ENST00000318443	NM_001024736.1	94	Gcc/Acc																																																																														
BLM	641	MSKCC	GRCh37	15	91304100	91304101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	47	545	1	ENST00000355112.3:c.1500dup	p.Val501CysfsTer3	p.V501Cfs*3	ENST00000355112	NM_000057.2	499	-/T																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126103	2126103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	202	579	0	ENST00000219476.3:c.2674G>A	p.Val892Ile	p.V892I	ENST00000219476	NM_000548.3	892	Gtc/Atc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223286	2223286	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150194608		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	164	627	0	ENST00000326181.6:c.898G>A	p.Glu300Lys	p.E300K	ENST00000326181	NM_032271.2	300	Gag/Aag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3642800	3642800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	43	566	0	ENST00000294008.3:c.2227G>A	p.Val743Met	p.V743M	ENST00000294008	NM_032444.2	743	Gtg/Atg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778323	3778323	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146514877		P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	104	454	0	ENST00000262367.5:c.6725C>T	p.Pro2242Leu	p.P2242L	ENST00000262367	NM_004380.2	2242	cCg/cTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857848	9857848	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	108	428	0	ENST00000330684.3:c.3553A>G	p.Lys1185Glu	p.K1185E	ENST00000330684	NM_001134407.1	1185	Aaa/Gaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934602	9934602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	112	384	0	ENST00000330684.3:c.1553G>A	p.Arg518His	p.R518H	ENST00000330684	NM_001134407.1	518	cGt/cAt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14042019	14042019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	36	295	0	ENST00000311895.7:c.2566C>T	p.Pro856Ser	p.P856S	ENST00000311895	NM_005236.2	856	Cca/Tca																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30133247	30133247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	155	492	0	ENST00000263025.4:c.251G>A	p.Arg84His	p.R84H	ENST00000263025	NM_002746.2	84	cGc/cAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650683	67650683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	189	415	0	ENST00000264010.4:c.988G>A	p.Ala330Thr	p.A330T	ENST00000264010	NM_006565.3	330	Gcc/Acc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660580	67660580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	178	480	1	ENST00000264010.4:c.1480C>T	p.Arg494Cys	p.R494C	ENST00000264010	NM_006565.3	494	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828486	72828486	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	158	453	0	ENST00000268489.5:c.8095G>T	p.Gly2699Ter	p.G2699*	ENST00000268489	NM_006885.3	2699	Gga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831656	72831656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	28	474	0	ENST00000268489.5:c.4925G>A	p.Ser1642Asn	p.S1642N	ENST00000268489	NM_006885.3	1642	aGc/aAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993822	72993822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	18	385	0	ENST00000268489.5:c.223G>A	p.Ala75Thr	p.A75T	ENST00000268489	NM_006885.3	75	Gcc/Acc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347980	89347980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	189	642	1	ENST00000301030.4:c.4970C>T	p.Ser1657Leu	p.S1657L	ENST00000301030	NM_001256183.1	1657	tCg/tTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348909	89348911	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	175	695	0	ENST00000301030.4:c.4039_4041del	p.Lys1347del	p.K1347del	ENST00000301030	NM_001256183.1	1347	AAG/-																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217012	7217012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	136	368	0	ENST00000380728.2:c.509C>A	p.Ala170Asp	p.A170D	ENST00000380728		170	gCt/gAt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16042379	16042379	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	128	421	0	ENST00000268712.3:c.1295A>C	p.Lys432Thr	p.K432T	ENST00000268712	NM_006311.3	432	aAa/aCa																																																																														
NF1	4763	MSKCC	GRCh37	17	29587387	29587388	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	86	279	0	ENST00000358273.4:c.4436dup	p.Leu1480ProfsTer2	p.L1480Pfs*2	ENST00000358273	NM_001042492.2	1477	-/T																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244952	41244952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	40	547	0	ENST00000357654.3:c.2596C>T	p.Arg866Cys	p.R866C	ENST00000357654	NM_007294.3	866	Cgc/Tgc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245476	41245476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	226	669	0	ENST00000357654.3:c.2072G>T	p.Arg691Ile	p.R691I	ENST00000357654	NM_007294.3	691	aGa/aTa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41251812	41251812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	164	497	1	ENST00000357654.3:c.527C>T	p.Thr176Met	p.T176M	ENST00000357654	NM_007294.3	176	aCg/aTg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763428	59763428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	157	513	0	ENST00000259008.2:c.2674C>T	p.Leu892Phe	p.L892F	ENST00000259008	NM_032043.2	892	Ctt/Ttt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78933909	78933909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	134	479	0	ENST00000306801.3:c.3509C>T	p.Thr1170Met	p.T1170M	ENST00000306801	NM_020761.2	1170	aCg/aTg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110201	3110201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	144	548	0	ENST00000078429.4:c.191G>A	p.Gly64Asp	p.G64D	ENST00000078429	NM_002067.2	64	gGc/gAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244406	5244406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	45	594	0	ENST00000357368.4:c.1076C>A	p.Pro359His	p.P359H	ENST00000357368	NM_002850.3	359	cCt/cAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296433	15296433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	206	696	0	ENST00000263388.2:c.2009G>A	p.Gly670Asp	p.G670D	ENST00000263388	NM_000435.2	670	gGt/gAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298125	15298125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	148	558	0	ENST00000263388.2:c.1631G>A	p.Arg544His	p.R544H	ENST00000263388	NM_000435.2	544	cGc/cAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349877	15349877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	97	367	1	ENST00000263377.2:c.3775C>T	p.Arg1259Cys	p.R1259C	ENST00000263377	NM_058243.2	1259	Cgc/Tgc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354248	15354248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	48	615	0	ENST00000263377.2:c.2632G>A	p.Ala878Thr	p.A878T	ENST00000263377	NM_058243.2	878	Gct/Act																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18276985	18276985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	124	353	0	ENST00000222254.8:c.1432C>T	p.Arg478Cys	p.R478C	ENST00000222254	NM_005027.3	478	Cgt/Tgt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965800	18965800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	169	561	0	ENST00000262803.5:c.1378C>T	p.Pro460Ser	p.P460S	ENST00000262803	NM_002911.3	460	Ccc/Tcc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257423	19257423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	203	713	0	ENST00000162023.5:c.710C>T	p.Ser237Phe	p.S237F	ENST00000162023		237	tCc/tTc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30303919	30303919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	144	426	0	ENST00000262643.3:c.155C>T	p.Thr52Met	p.T52M	ENST00000262643	NM_001238.2	52	aCg/aTg																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792902	33792902	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	16	65	0	ENST00000498907.2:c.419A>G	p.Asp140Gly	p.D140G	ENST00000498907	NM_004364.3	140	gAc/gGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211402	36211402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	61	689	0	ENST00000222270.7:c.1153G>A	p.Ala385Thr	p.A385T	ENST00000222270	NM_014727.1	385	Gct/Act																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214711	36214711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	109	425	0	ENST00000222270.7:c.3137G>A	p.Arg1046His	p.R1046H	ENST00000222270	NM_014727.1	1046	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219692	36219692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	186	534	1	ENST00000222270.7:c.4589C>T	p.Ala1530Val	p.A1530V	ENST00000222270	NM_014727.1	1530	gCg/gTg																																																																														
AXL	558	MSKCC	GRCh37	19	41737106	41737106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	189	536	0	ENST00000301178.4:c.686G>A	p.Arg229His	p.R229H	ENST00000301178	NM_021913.4	229	cGt/cAt																																																																														
CIC	23152	MSKCC	GRCh37	19	42791215	42791215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	166	535	0	ENST00000575354.2:c.275C>A	p.Ala92Asp	p.A92D	ENST00000575354	NM_015125.3	92	gCt/gAt																																																																														
CIC	23152	MSKCC	GRCh37	19	42795541	42795541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	166	588	1	ENST00000575354.2:c.2621G>A	p.Gly874Asp	p.G874D	ENST00000575354	NM_015125.3	874	gGc/gAc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855885	45855885	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	158	563	0	ENST00000391945.4:c.1925A>G	p.Asp642Gly	p.D642G	ENST00000391945	NM_000400.3	642	gAc/gGc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470548	25470548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	173	537	1	ENST00000264709.3:c.926G>A	p.Arg309His	p.R309H	ENST00000264709	NM_175629.2	309	cGc/cAc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607858	46607858	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	144	507	0	ENST00000263734.3:c.2045+2T>C		p.X682_splice	ENST00000263734	NM_001430.4	682																																																																															
MSH2	4436	MSKCC	GRCh37	2	47643569	47643569	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	95	381	0	ENST00000233146.2:c.1076+1G>A		p.X359_splice	ENST00000233146	NM_000251.2	359																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027728	48027728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	65	320	0	ENST00000234420.5:c.2606G>A	p.Cys869Tyr	p.C869Y	ENST00000234420	NM_000179.2	869	tGt/tAt																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96920586	96920586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	30	299	1	ENST00000258439.3:c.394G>A	p.Ala132Thr	p.A132T	ENST00000258439	NM_001193304.2	132	Gcc/Acc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170798	99170798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	111	419	0	ENST00000074304.5:c.1427C>T	p.Ala476Val	p.A476V	ENST00000074304	NM_001134224.1	476	gCt/gTt																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047032	128047032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	129	429	0	ENST00000285398.2:c.703G>A	p.Val235Met	p.V235M	ENST00000285398	NM_000122.1	235	Gtg/Atg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131327	202131327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	36	402	0	ENST00000358485.4:c.295G>A	p.Asp99Asn	p.D99N	ENST00000358485	NM_001080125.1	99	Gat/Aat																																																																														
CASP8	841	MSKCC	GRCh37	2	202136246	202136246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	87	395	1	ENST00000358485.4:c.490C>T	p.Leu164Phe	p.L164F	ENST00000358485	NM_001080125.1	164	Ctc/Ttc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660201	227660201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	148	492	1	ENST00000305123.5:c.3254C>A	p.Ala1085Asp	p.A1085D	ENST00000305123	NM_005544.2	1085	gCc/gAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022390	31022391	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	52	229	0	ENST00000375687.4:c.1879dup	p.Ala627GlyfsTer8	p.A627Gfs*8	ENST00000375687	NM_015338.5	625	-/G																																																																														
SRC	6714	MSKCC	GRCh37	20	36031768	36031768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	113	443	0	ENST00000358208.4:c.1597G>A	p.Gly533Arg	p.G533R	ENST00000358208		533	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877345	40877345	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	100	334	0	ENST00000373198.4:c.2351T>C	p.Met784Thr	p.M784T	ENST00000373198	NM_133170.3	784	aTg/aCg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265129	46265129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	112	348	0	ENST00000371998.3:c.1999G>A	p.Val667Ile	p.V667I	ENST00000371998		667	Gta/Ata																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866397	42866397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	173	612	0	ENST00000398585.3:c.235G>A	p.Ala79Thr	p.A79T	ENST00000398585	NM_001135099.1	79	Gct/Act																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44514879	44514879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	123	340	0	ENST00000291552.4:c.368C>T	p.Ala123Val	p.A123V	ENST00000291552	NM_006758.2	123	gCg/gTg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715729	30715729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	86	267	0	ENST00000359013.4:c.1462G>A	p.Ala488Thr	p.A488T	ENST00000359013	NM_001024847.2	488	Gca/Aca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163989	47163989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	90	280	0	ENST00000409792.3:c.2137G>A	p.Ala713Thr	p.A713T	ENST00000409792	NM_014159.6	713	Gca/Aca																																																																														
MST1	4485	MSKCC	GRCh37	3	49722303	49722303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	21	69	0	ENST00000449682.2:c.1637C>T	p.Thr546Met	p.T546M	ENST00000449682	NM_020998.3	546	aCg/aTg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205093	128205093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	142	541	0	ENST00000341105.2:c.348G>A	p.Trp116Ter	p.W116*	ENST00000341105	NM_032638.4	116	tgG/tgA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952019	178952019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	9	374	0	ENST00000263967.3:c.3074C>T	p.Thr1025Ile	p.T1025I	ENST00000263967	NM_006218.2	1025	aCc/aTc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191161	185191161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	102	346	0	ENST00000265026.3:c.2042G>A	p.Ser681Asn	p.S681N	ENST00000265026	NM_004721.4	681	aGc/aAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803663	1803663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	208	645	0	ENST00000260795.2:c.841G>A	p.Ala281Thr	p.A281T	ENST00000260795		281	Gca/Aca																																																																														
KDR	3791	MSKCC	GRCh37	4	55963921	55963921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	24	311	0	ENST00000263923.4:c.2522G>A	p.Gly841Asp	p.G841D	ENST00000263923	NM_002253.2	841	gGc/gAc																																																																														
KDR	3791	MSKCC	GRCh37	4	55972857	55972858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	79	328	0	ENST00000263923.4:c.1532dup	p.Asn511LysfsTer21	p.N511Kfs*21	ENST00000263923	NM_002253.2	511	aac/aaAc																																																																														
KDR	3791	MSKCC	GRCh37	4	55973936	55973936	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	134	380	0	ENST00000263923.4:c.1380G>A	p.Trp460Ter	p.W460*	ENST00000263923	NM_002253.2	460	tgG/tgA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467764	66467764	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	76	284	0	ENST00000273854.3:c.505A>T	p.Asn169Tyr	p.N169Y	ENST00000273854	NM_004439.5	169	Aac/Tac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535303	66535303	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	136	504	0	ENST00000273854.3:c.158T>C	p.Leu53Pro	p.L53P	ENST00000273854	NM_004439.5	53	cTc/cCc																																																																														
TET2	54790	MSKCC	GRCh37	4	106196936	106196936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	82	262	0	ENST00000380013.4:c.5269C>T	p.His1757Tyr	p.H1757Y	ENST00000380013	NM_001127208.2	1757	Cat/Tat																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159144	143159144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	63	249	0	ENST00000262992.4:c.709A>G	p.Lys237Glu	p.K237E	ENST00000262992	NM_001101669.1	237	Aaa/Gaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253808	153253808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	97	316	0	ENST00000281708.4:c.925C>T	p.Arg309Cys	p.R309C	ENST00000281708	NM_033632.3	309	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542345	187542345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	79	307	0	ENST00000441802.2:c.5395G>A	p.Ala1799Thr	p.A1799T	ENST00000441802	NM_005245.3	1799	Gct/Act																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628454	187628454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	178	525	0	ENST00000441802.2:c.2528A>G	p.Gln843Arg	p.Q843R	ENST00000441802	NM_005245.3	843	cAg/cGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1271300	1271300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	158	481	2	ENST00000310581.5:c.2402C>T	p.Ala801Val	p.A801V	ENST00000310581	NM_198253.2	801	gCc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294643	1294643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	50	411	0	ENST00000310581.5:c.358C>T	p.Arg120Cys	p.R120C	ENST00000310581	NM_198253.2	120	Cgc/Tgc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31472277	31472277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	155	534	0	ENST00000344624.3:c.2134G>A	p.Ala712Thr	p.A712T	ENST00000344624		712	Gcc/Acc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871223	35871223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	98	361	0	ENST00000303115.3:c.445A>G	p.Thr149Ala	p.T149A	ENST00000303115	NM_002185.3	149	Aca/Gca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950189	38950189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	66	426	0	ENST00000357387.3:c.3761G>A	p.Ser1254Asn	p.S1254N	ENST00000357387	NM_152756.3	1254	aGc/aAc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168726	56168727	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	112	307	0	ENST00000399503.3:c.1583dup	p.Leu528PhefsTer13	p.L528Ffs*13	ENST00000399503	NM_005921.1	527	cct/ccTt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751532	57751532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	78	246	0	ENST00000274289.3:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000274289	NM_006622.3	487	Ccg/Tcg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590410	67590411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	82	245	0	ENST00000274335.5:c.1477dup	p.Ile493AsnfsTer3	p.I493Nfs*3	ENST00000274335		491	ata/atAa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449487	149449487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	29	477	1	ENST00000286301.3:c.1459G>A	p.Ala487Thr	p.A487T	ENST00000286301	NM_005211.3	487	Gcc/Acc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509342	149509342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	23	333	0	ENST00000261799.4:c.1557G>T	p.Gln519His	p.Q519H	ENST00000261799	NM_002609.3	519	caG/caT																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519324	176519324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	97	360	1	ENST00000292408.4:c.730C>T	p.Arg244Trp	p.R244W	ENST00000292408	NM_213647.1	244	Cgg/Tgg																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839988	27839988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	24	393	2	ENST00000328488.2:c.106G>A	p.Val36Ile	p.V36I	ENST00000328488	NM_003533.2	36	Gtc/Atc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671238	30671238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	212	561	0	ENST00000376406.3:c.5639G>A	p.Ser1880Asn	p.S1880N	ENST00000376406	NM_014641.2	1880	aGc/aAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166284	32166284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	183	542	0	ENST00000375023.3:c.4670G>A	p.Gly1557Asp	p.G1557D	ENST00000375023	NM_004557.3	1557	gGc/gAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187513	32187513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	205	565	0	ENST00000375023.3:c.1366C>T	p.Pro456Ser	p.P456S	ENST00000375023	NM_004557.3	456	Cct/Tct																																																																														
TAP1	6890	MSKCC	GRCh37	6	32813522	32813522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	28	359	0	ENST00000354258.4:c.2261G>A	p.Arg754His	p.R754H	ENST00000354258	NM_000593.5	754	cGc/cAc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818131	32818131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	169	537	0	ENST00000354258.4:c.1394C>T	p.Ala465Val	p.A465V	ENST00000354258	NM_000593.5	465	gCt/gTt																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43752294	43752294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	27	367	0	ENST00000523873.1:c.694C>T	p.Arg232Trp	p.R232W	ENST00000523873		232	Cgg/Tgg																																																																														
FYN	2534	MSKCC	GRCh37	6	112024168	112024168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	110	370	0	ENST00000368678.4:c.617G>A	p.Arg206His	p.R206H	ENST00000368678		206	cGc/cAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117746738	117746738	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	116	364	0	ENST00000368508.3:c.82A>G	p.Thr28Ala	p.T28A	ENST00000368508	NM_002944.2	28	Aca/Gca																																																																														
PMS2	5395	MSKCC	GRCh37	7	6042169	6042170	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGG			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	62	423	0	ENST00000265849.7:c.448_451dup	p.Arg151ProfsTer22	p.R151Pfs*22	ENST00000265849	NM_000535.5	151	cgc/cCCCCgc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508589	106508589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	24	311	0	ENST00000359195.3:c.583C>T	p.Leu195Phe	p.L195F	ENST00000359195	NM_002649.2	195	Ctc/Ttc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508601	106508601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	90	321	0	ENST00000359195.3:c.595C>T	p.His199Tyr	p.H199Y	ENST00000359195	NM_002649.2	199	Cac/Tac																																																																														
BRAF	673	MSKCC	GRCh37	7	140500228	140500228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	177	422	1	ENST00000288602.6:c.914C>T	p.Ala305Val	p.A305V	ENST00000288602	NM_004333.4	305	gCg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949128	151949128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	149	435	0	ENST00000262189.6:c.1517C>T	p.Thr506Ile	p.T506I	ENST00000262189	NM_170606.2	506	aCt/aTt																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346449	152346449	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	73	284	0	ENST00000359321.1:c.122-1G>A		p.X41_splice	ENST00000359321	NM_005431.1	41																																																																															
PREX2	80243	MSKCC	GRCh37	8	68972929	68972929	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	97	358	0	ENST00000288368.4:c.1254G>A	p.Trp418Ter	p.W418*	ENST00000288368	NM_024870.2	418	tgG/tgA																																																																														
NBN	4683	MSKCC	GRCh37	8	90982685	90982685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	114	316	0	ENST00000265433.3:c.803C>T	p.Thr268Met	p.T268M	ENST00000265433	NM_002485.4	268	aCg/aTg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566042	141566042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	148	408	0	ENST00000220592.5:c.1222G>A	p.Val408Met	p.V408M	ENST00000220592	NM_012154.3	408	Gtg/Atg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5123045	5123045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	39	341	0	ENST00000381652.3:c.3101C>T	p.Ala1034Val	p.A1034V	ENST00000381652	NM_004972.3	1034	gCc/gTc																																																																														
TEK	7010	MSKCC	GRCh37	9	27213494	27213494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	96	431	0	ENST00000380036.4:c.2890G>A	p.Asp964Asn	p.D964N	ENST00000380036	NM_000459.3	964	Gat/Aat																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482202	87482202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	131	488	1	ENST00000277120.3:c.1489C>T	p.Leu497Phe	p.L497F	ENST00000277120		497	Ctc/Ttc																																																																														
SYK	6850	MSKCC	GRCh37	9	93624520	93624520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	113	372	1	ENST00000375746.1:c.611C>T	p.Ala204Val	p.A204V	ENST00000375746	NM_001174167.1	204	gCc/gTc																																																																														
SYK	6850	MSKCC	GRCh37	9	93650842	93650842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	138	376	2	ENST00000375746.1:c.1768C>T	p.Arg590Trp	p.R590W	ENST00000375746	NM_001174167.1	590	Cgg/Tgg																																																																														
FANCC	2176	MSKCC	GRCh37	9	97933362	97933362	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	44	300	0	ENST00000289081.3:c.520C>T	p.Arg174Ter	p.R174*	ENST00000289081	NM_000136.2	174	Cga/Tga																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891187	101891187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	66	328	0	ENST00000374994.4:c.148A>G	p.Thr50Ala	p.T50A	ENST00000374994	NM_004612.2	50	Aca/Gca																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412658	139412658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	185	548	0	ENST00000277541.6:c.1186G>A	p.Ala396Thr	p.A396T	ENST00000277541	NM_017617.3	396	Gcc/Acc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417392	139417392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	45	613	0	ENST00000277541.6:c.652C>T	p.Pro218Ser	p.P218S	ENST00000277541	NM_017617.3	218	Ccc/Tcc																																																																														
AR	367	MSKCC	GRCh37	X	66765298	66765298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	121	273	0	ENST00000374690.3:c.310C>T	p.Pro104Ser	p.P104S	ENST00000374690	NM_000044.3	104	Ccc/Tcc																																																																														
MED12	9968	MSKCC	GRCh37	X	70357450	70357450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	23	288	0	ENST00000374080.3:c.5791A>G	p.Thr1931Ala	p.T1931A	ENST00000374080		1931	Act/Gct																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251922	8251922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	158	488	2	ENST00000335790.3:c.155C>T	p.Ala52Val	p.A52V	ENST00000335790	NM_002315.2	52	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	20	598	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0031216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	80	538	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143985	11143985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	57	622	1	ENST00000344626.4:c.3566G>T	p.Arg1189Leu	p.R1189L	ENST00000344626	NM_003072.3	1189	cGa/cTa																																																																														
MST1	4485	MSKCC	GRCh37	3	49721541	49721541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	60	548	0	ENST00000449682.2:c.2098G>A	p.Ala700Thr	p.A700T	ENST00000449682	NM_020998.3	700	Gca/Aca																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30102152	30102152	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	36	541	1	ENST00000331968.5:c.1315C>T	p.Arg439Trp	p.R439W	ENST00000331968	NM_002742.2	439	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76813076	76813076	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031673-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	114	509	0	ENST00000373344.5:c.6545A>T	p.Lys2182Met	p.K2182M	ENST00000373344	NM_000489.3	2182	aAg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	16	420	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0031809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	19	799	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	23	820	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	11	850	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350772	89350775	+	frameshift_variant	Frame_Shift_Del	DEL	TTTG	TTTG	-	rs886039734		P-0031809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	28	1324	0	ENST00000301030.4:c.2175_2178del	p.Asn725LysfsTer23	p.N725Kfs*23	ENST00000301030	NM_001256183.1	725	aaCAAA/aa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729400	41729400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	26	845	0	ENST00000242208.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000242208	NM_002192.2	377	Cgc/Tgc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797314	135797314	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	23	383	0	ENST00000298552.3:c.555del	p.Tyr185Ter	p.Y185*	ENST00000298552	NM_001162426.1	185	taC/ta																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981271	201981272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	86	1027	0	ENST00000359651.3:c.355dup	p.Asp119GlyfsTer16	p.D119Gfs*16	ENST00000359651		117	ctg/ctGg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670657	134670657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1441537601		P-0031809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	14	1024	0	ENST00000398015.3:c.568C>T	p.Arg190Cys	p.R190C	ENST00000398015	NM_004441.4	190	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	532	380	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0032346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	140	126	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0032346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	140	126	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	455	542	1	ENST00000269305.4:c.464C>A	p.Thr155Asn	p.T155N	ENST00000269305	NM_001126112.2	155	aCc/aAc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61706022	61706022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	386	464	0	ENST00000401558.2:c.3149A>G	p.His1050Arg	p.H1050R	ENST00000401558	NM_003400.3	1050	cAt/cGt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	325	518	0	ENST00000322088.6:c.767C>A	p.Ser256Tyr	p.S256Y	ENST00000322088	NM_014225.5	256	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	433	684	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591259	67591303	+	inframe_deletion	In_Frame_Del	DEL	AAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATG	AAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATG	-			P-0032357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	68	328	0	ENST00000274335.5:c.1761_1805del	p.Lys587_Glu601del	p.K587_E601del	ENST00000274335		586	cAAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATGaa/caa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123202465	123202465	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	139	265	1	ENST00000218089.9:c.2317C>G	p.Gln773Glu	p.Q773E	ENST00000218089	NM_001042749.1	773	Caa/Gaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	90	731	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	58	622	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255887	16255887	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	30	443	0	ENST00000375759.3:c.3152A>C	p.Lys1051Thr	p.K1051T	ENST00000375759	NM_015001.2	1051	aAa/aCa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164659	47164690	+	frameshift_variant	Frame_Shift_Del	DEL	AGAATAGGATGATGTCCTTAGGTCTCTGTAAG	AGAATAGGATGATGTCCTTAGGTCTCTGTAAG	-			P-0032703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	37	470	0	ENST00000409792.3:c.1436_1467del	p.Ser479Ter	p.S479*	ENST00000409792	NM_014159.6	479	tCTTACAGAGACCTAAGGACATCATCCTATTCT/t																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52613194	52613194	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	46	651	0	ENST00000394830.3:c.3334G>T	p.Glu1112Ter	p.E1112*	ENST00000394830	NM_018313.4	1112	Gaa/Taa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157510779	157510800	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCGGGATCCTTGCAAGGCCC	ACTCGGGATCCTTGCAAGGCCC	-			P-0032703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	24	460	0	ENST00000346085.5:c.3556_3577del	p.Ser1186ArgfsTer18	p.S1186Rfs*18	ENST00000346085	NM_020732.3	1185	aACTCGGGATCCTTGCAAGGCCCa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	168	638	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	48	308	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	76	514	1	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
AXL	558	MSKCC	GRCh37	19	41743864	41743864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	77	668	0	ENST00000301178.4:c.799G>A	p.Asp267Asn	p.D267N	ENST00000301178	NM_021913.4	267	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518366	8518366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	28	318	0	ENST00000356435.5:c.1025C>T	p.Thr342Met	p.T342M	ENST00000356435		342	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557750	187557750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	66	340	0	ENST00000441802.2:c.3961G>A	p.Asp1321Asn	p.D1321N	ENST00000441802	NM_005245.3	1321	Gat/Aat																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666366	206666366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	74	552	0	ENST00000367120.3:c.1846G>A	p.Glu616Lys	p.E616K	ENST00000367120	NM_014002.3	616	Gag/Aag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39251196	39251196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	38	695	0	ENST00000402219.2:c.1157G>T	p.Gly386Val	p.G386V	ENST00000402219	NM_005633.3	386	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0033545-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			367	195	385	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
REL	5966	MSKCC	GRCh37	2	61118871	61118871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033545-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			323	91	292	0	ENST00000295025.8:c.64C>T	p.Arg22Cys	p.R22C	ENST00000295025	NM_002908.2	22	Cgt/Tgt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981167	201981167	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033545-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			638	151	995	0	ENST00000359651.3:c.246del	p.Asn83ThrfsTer72	p.N83Tfs*72	ENST00000359651		82	aaG/aa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243828074	243828074	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033545-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			304	75	289	1	ENST00000263826.5:c.284G>T	p.Arg95Met	p.R95M	ENST00000263826	NM_005465.4	95	aGg/aTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604790	+	frameshift_variant	Frame_Shift_Del	DEL	ACG	ACG	T			P-0033545-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			213	89	453	0	ENST00000342988.3:c.1610_1612delinsT	p.Asp537ValfsTer39	p.D537Vfs*39	ENST00000342988	NM_005359.5	537	gACGaa/gTaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	244	497	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	280	567	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	84	509	1	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	10	488	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	55	680	1	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	342	785	0	ENST00000227507.2:c.857C>T	p.Thr286Ile	p.T286I	ENST00000227507	NM_053056.2	286	aCa/aTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	347	646	5	ENST00000358273.4:c.2033delC	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	90	525	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086076	16086076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	228	519	0	ENST00000281043.3:c.1252G>A	p.Ala418Thr	p.A418T	ENST00000281043	NM_005378.4	418	Gcc/Acc																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	107	470	6	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916728	178916728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	78	369	0	ENST00000263967.3:c.115G>A	p.Glu39Lys	p.E39K	ENST00000263967	NM_006218.2	39	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	248	513	1	ENST00000268489.5:c.2287dupG	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	83	187	0	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087437	27087437	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	331	712	0	ENST00000324856.7:c.2011G>T	p.Gly671Ter	p.G671*	ENST00000324856	NM_006015.4	671	Gga/Tga																																																																														
MITF	4286	MSKCC	GRCh37	3	70005612	70005614	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	95	419	0	ENST00000352241.4:c.952_954del	p.Arg318del	p.R318del	ENST00000352241	NM_198159.2	315	cGAAga/cga																																																																														
ARAF	369	MSKCC	GRCh37	X	47426093	47426094	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	276	813	0	ENST00000377045.4:c.619dup	p.Leu207ProfsTer36	p.L207Pfs*36	ENST00000377045	NM_001654.4	205	gcc/gCcc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581272	48581273	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	34	506	0	ENST00000342988.3:c.579_580del	p.Glu193AspfsTer12	p.E193Dfs*12	ENST00000342988	NM_005359.5	192	acAGag/acag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738726	145738726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	398	826	2	ENST00000428558.2:c.2338C>T	p.Arg780Trp	p.R780W	ENST00000428558	NM_004260.3	780	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	368	933	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598212	28598212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	87	734	2	ENST00000253063.3:c.184G>A	p.Glu62Lys	p.E62K	ENST00000253063	NM_031459.4	62	Gag/Aag																																																																														
SESN3	143686	MSKCC	GRCh37	11	94964024	94964024	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	78	215	0	ENST00000536441.1:c.1A>G	p.Met1?	p.M1?	ENST00000536441	NM_144665.3	1	Atg/Gtg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536739	120536739	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	202	621	0	ENST00000229340.5:c.353T>C	p.Val118Ala	p.V118A	ENST00000229340	NM_006861.6	118	gTg/gCg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727528	66727528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	179	514	0	ENST00000307102.5:c.244G>A	p.Val82Met	p.V82M	ENST00000307102	NM_002755.3	82	Gtg/Atg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779365	3779365	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	66	743	1	ENST00000262367.5:c.5683C>T	p.Gln1895Ter	p.Q1895*	ENST00000262367	NM_004380.2	1895	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29585465	29585465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	156	431	1	ENST00000358273.4:c.4280del	p.Leu1427Ter	p.L1427*	ENST00000358273	NM_001042492.2	1426	aTt/at																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884217	37884218	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	50	509	0	ENST00000269571.5:c.3694dupG	p.Ala1232GlyfsTer45	p.A1232Gfs*45	ENST00000269571		1230	cgg/cGgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244326	5244326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	315	812	2	ENST00000357368.4:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000357368	NM_002850.3	386	Cgt/Tgt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278101	18278101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	74	678	0	ENST00000222254.8:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000222254	NM_005027.3	574	cGa/cAa																																																																														
ALK	238	MSKCC	GRCh37	2	29416167	29416167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	256	563	0	ENST00000389048.3:c.4786G>A	p.Ala1596Thr	p.A1596T	ENST00000389048	NM_004304.4	1596	Gct/Act																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99154425	99154426	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	51	471	0	ENST00000074304.5:c.568_569del	p.Val190GlnfsTer10	p.V190Qfs*10	ENST00000074304	NM_001134224.1	189	acTGtc/actc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1955212	1955212	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	241	542	0	ENST00000382891.5:c.2299T>C	p.Cys767Arg	p.C767R	ENST00000382891	NM_133335.3	767	Tgc/Cgc																																																																														
HGF	3082	MSKCC	GRCh37	7	81332000	81332000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	81	315	0	ENST00000222390.5:c.2084G>A	p.Arg695His	p.R695H	ENST00000222390	NM_000601.4	695	cGt/cAt																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412532	80412532	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	29	329	0	ENST00000286548.4:c.509C>A	p.Pro170His	p.P170H	ENST00000286548	NM_002072.3	170	cCt/cAt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217323	123217323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	97	629	0	ENST00000218089.9:c.2977C>T	p.Pro993Ser	p.P993S	ENST00000218089	NM_001042749.1	993	Cca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	28	408	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936768	78936768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	29	775	1	ENST00000306801.3:c.3850G>A	p.Gly1284Arg	p.G1284R	ENST00000306801	NM_020761.2	1284	Gga/Aga																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149512352	149512352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	75	614	0	ENST00000261799.4:c.1088G>T	p.Gly363Val	p.G363V	ENST00000261799	NM_002609.3	363	gGc/gTc																																																																														
AR	367	MSKCC	GRCh37	X	66931258	66931258	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	44	187	0	ENST00000374690.3:c.1900A>C	p.Lys634Gln	p.K634Q	ENST00000374690	NM_000044.3	634	Aaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	368	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	571	699	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67670713	67670713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	295	458	0	ENST00000264010.4:c.1958G>T	p.Gly653Val	p.G653V	ENST00000264010	NM_006565.3	653	gGa/gTa																																																																														
WT1	7490	MSKCC	GRCh37	11	32456396	32456396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	261	611	1	ENST00000332351.3:c.496G>A	p.Gly166Ser	p.G166S	ENST00000332351	NM_024426.4	166	Ggc/Agc																																																																														
MED12	9968	MSKCC	GRCh37	X	70352388	70352388	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	199	338	0	ENST00000374080.3:c.4415G>A	p.Ser1472Asn	p.S1472N	ENST00000374080		1472	aGc/aAc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366683	40366683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	158	314	0	ENST00000397332.2:c.514C>A	p.Pro172Thr	p.P172T	ENST00000397332	NM_001033082.2	172	Ccc/Acc																																																																														
JUN	3725	MSKCC	GRCh37	1	59248692	59248708	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGGCGTTGAGGGCAT	CGAGGCGTTGAGGGCAT	-			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	89	821	0	ENST00000371222.2:c.35_51del	p.Asp12ValfsTer13	p.D12Vfs*13	ENST00000371222	NM_002228.3	12	gATGCCCTCAACGCCTCG/g																																																																														
HIST2H3D	653604	MSKCC	GRCh37	1	149784839	149784839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	89	208	0	ENST00000331491.1:c.398G>T	p.Gly133Val	p.G133V	ENST00000331491	NM_001123375.2	133	gGg/gTg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243727100	243727100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	364	502	0	ENST00000263826.5:c.870T>A	p.Phe290Leu	p.F290L	ENST00000263826	NM_005465.4	290	ttT/ttA																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047238	77047238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	417	549	0	ENST00000356341.3:c.1306G>T	p.Val436Leu	p.V436L	ENST00000356341	NM_002576.4	436	Gtg/Ttg																																																																														
SESN3	143686	MSKCC	GRCh37	11	94917692	94917692	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	208	512	0	ENST00000536441.1:c.829G>T	p.Glu277Ter	p.E277*	ENST00000536441	NM_144665.3	277	Gaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343376	118343376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	198	314	0	ENST00000534358.1:c.1502A>T	p.Glu501Val	p.E501V	ENST00000534358	NM_005933.3	501	gAg/gTg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645388	67645388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	149	283	0	ENST00000264010.4:c.653G>C	p.Gly218Ala	p.G218A	ENST00000264010	NM_006565.3	218	gGc/gCc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351528	89351528	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	493	730	0	ENST00000301030.4:c.1422C>G	p.Asp474Glu	p.D474E	ENST00000301030	NM_001256183.1	474	gaC/gaG																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600006	10600006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	565	679	0	ENST00000171111.5:c.1570G>T	p.Gly524Cys	p.G524C	ENST00000171111	NM_203500.1	524	Ggc/Tgc																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96919628	96919628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	205	531	0	ENST00000258439.3:c.635C>T	p.Ser212Leu	p.S212L	ENST00000258439	NM_001193304.2	212	tCa/tTa																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736160	204736160	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	340	436	1	ENST00000302823.3:c.517G>C	p.Gly173Arg	p.G173R	ENST00000302823	NM_005214.4	173	Ggg/Cgg																																																																														
BARD1	580	MSKCC	GRCh37	2	215645508	215645508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	59	610	1	ENST00000260947.4:c.1090T>C	p.Ser364Pro	p.S364P	ENST00000260947	NM_000465.2	364	Tca/Cca																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46267767	46267767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	244	512	0	ENST00000371998.3:c.2528A>G	p.Gln843Arg	p.Q843R	ENST00000371998		843	cAg/cGg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643711	52643712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	502	591	0	ENST00000394830.3:c.2184dup	p.Val729CysfsTer5	p.V729Cfs*5	ENST00000394830	NM_018313.4	728	-/T																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31451736	31451736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	241	248	0	ENST00000344624.3:c.2586G>A	p.Met862Ile	p.M862I	ENST00000344624		862	atG/atA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38949832	38949832	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	218	315	0	ENST00000357387.3:c.4118C>G	p.Ser1373Cys	p.S1373C	ENST00000357387	NM_152756.3	1373	tCc/tGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527614	157527614	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	81	443	0	ENST00000346085.5:c.5339A>T	p.Gln1780Leu	p.Q1780L	ENST00000346085	NM_020732.3	1780	cAa/cTa																																																																														
HGF	3082	MSKCC	GRCh37	7	81332040	81332040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	169	237	1	ENST00000222390.5:c.2044C>T	p.His682Tyr	p.H682Y	ENST00000222390	NM_000601.4	682	Cat/Tat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129907	69129907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	166	282	0	ENST00000288368.4:c.4661del	p.Leu1554ArgfsTer12	p.L1554Rfs*12	ENST00000288368	NM_024870.2	1554	cTg/cg																																																																														
NBN	4683	MSKCC	GRCh37	8	90967554	90967554	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	104	351	0	ENST00000265433.3:c.1354A>G	p.Thr452Ala	p.T452A	ENST00000265433	NM_002485.4	452	Acc/Gcc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410118	63410118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	534	655	0	ENST00000330258.3:c.3049G>T	p.Gly1017Trp	p.G1017W	ENST00000330258	NM_152424.3	1017	Ggg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	511	755	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38176413	38176413	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	146	536	1	ENST00000317025.8:c.1855G>A	p.Gly619Ser	p.G619S	ENST00000317025	NM_023034.1	619	Ggt/Agt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622301	117622301	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	85	493	0	ENST00000368508.3:c.6570-1G>A		p.X2190_splice	ENST00000368508	NM_002944.2	2190																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	369	564	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0036233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	198	349	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856130	111856130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	164	185	0	ENST00000341259.2:c.181G>A	p.Glu61Lys	p.E61K	ENST00000341259	NM_005475.2	61	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133256790	133256790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	229	469	0	ENST00000320574.5:c.304C>T	p.Pro102Ser	p.P102S	ENST00000320574	NM_006231.2	102	Ccg/Tcg																																																																														
NF1	4763	MSKCC	GRCh37	17	29528111	29528111	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	297	476	0	ENST00000358273.4:c.1120del	p.Asp374IlefsTer2	p.D374Ifs*2	ENST00000358273	NM_001042492.2	373	gtG/gt																																																																														
EZH1	2145	MSKCC	GRCh37	17	40876422	40876423	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	111	552	0	ENST00000428826.2:c.266dup	p.Phe92IlefsTer35	p.F92Ifs*35	ENST00000428826		89	ttc/ttTc																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180225	38180226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	197	459	0	ENST00000396334.3:c.77dup	p.Val27GlyfsTer44	p.V27Gfs*44	ENST00000396334	NM_002468.4	25	gcc/gCcc																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778023	27778023	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	191	431	0	ENST00000369163.2:c.172T>C	p.Ser58Pro	p.S58P	ENST00000369163	NM_003536.2	58	Tcc/Ccc																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			281	28	209	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			180	37	226	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			547	70	519	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			199	24	211	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			632	99	439	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
NF1	4763	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			271	29	295	0	ENST00000358273.4:c.6852_6855delTTAC	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			206	16	224	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123246935	123246935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113014479		P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			424	55	361	0	ENST00000358487.5:c.1990C>T	p.Arg664Trp	p.R664W	ENST00000358487	NM_000141.4	664	Cgg/Tgg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			968	124	709	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099274	4099274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142307980		P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			856	145	753	0	ENST00000262948.5:c.844C>T	p.Pro282Ser	p.P282S	ENST00000262948	NM_030662.3	282	Ccc/Tcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			101	11	70	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332628	65332628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			305	35	312	0	ENST00000342505.4:c.911C>T	p.Ser304Leu	p.S304L	ENST00000342505	NM_002227.2	304	tCg/tTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			865	98	703	2	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298120	15298120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			882	118	744	0	ENST00000263388.2:c.1636G>A	p.Val546Met	p.V546M	ENST00000263388	NM_000435.2	546	Gtg/Atg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933400	39933400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			693	94	588	0	ENST00000378444.4:c.1199del	p.Gly400AlafsTer42	p.G400Afs*42	ENST00000378444	NM_001123385.1	400	gGc/gc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28644740	28644741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			216	13	246	0	ENST00000241453.7:c.52dup	p.Ser18PhefsTer24	p.S18Ffs*24	ENST00000241453	NM_004119.2	18	tct/tTct																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138564	2138564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			914	70	647	0	ENST00000219476.3:c.5377C>T	p.Arg1793Trp	p.R1793W	ENST00000219476	NM_000548.3	1793	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133225525	133225525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			699	81	589	0	ENST00000320574.5:c.4139C>T	p.Ser1380Leu	p.S1380L	ENST00000320574	NM_006231.2	1380	tCg/tTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29527531	29527532	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			436	60	461	0	ENST00000358273.4:c.983_984del	p.Cys328Ter	p.C328*	ENST00000358273	NM_001042492.2	327	cTG/c																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440431	49440431	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			953	119	713	2	ENST00000301067.7:c.4379delC	p.Pro1460HisfsTer46	p.P1460Hfs*46	ENST00000301067	NM_003482.3	1460	cCa/ca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			365	34	425	3	ENST00000262189.6:c.8389_8390del	p.Lys2797GlyfsTer11	p.K2797Gfs*11	ENST00000262189	NM_170606.2	2797	AAg/g																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774194	66774194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	145	935	1	ENST00000307102.5:c.670G>A	p.Val224Met	p.V224M	ENST00000307102	NM_002755.3	224	Gtg/Atg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134569	2134569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			935	60	782	4	ENST00000219476.3:c.4351del	p.Arg1451AlafsTer25	p.R1451Afs*25	ENST00000219476	NM_000548.3	1449	tCc/tc																																																																														
POLE	5426	MSKCC	GRCh37	12	133226017	133226017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			828	120	774	1	ENST00000320574.5:c.3880C>T	p.Arg1294Cys	p.R1294C	ENST00000320574	NM_006231.2	1294	Cgt/Tgt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86682702	86682703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			166	22	169	0	ENST00000274376.6:c.2912dup	p.Leu971PhefsTer3	p.L971Ffs*3	ENST00000274376	NM_002890.2	969	-/T																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220899	36220899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			263	28	257	1	ENST00000222270.7:c.4949C>T	p.Thr1650Met	p.T1650M	ENST00000222270	NM_014727.1	1650	aCg/aTg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998441	100998443	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			476	57	424	0	ENST00000325455.5:c.1359_1361del	p.Ser454del	p.S454del	ENST00000325455	NM_001202474.3	453	tcCTCg/tcg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861829	57861829	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			714	98	546	0	ENST00000228682.2:c.1130G>C	p.Ser377Thr	p.S377T	ENST00000228682	NM_005269.2	377	aGc/aCc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118796	115118797	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			657	85	501	0	ENST00000257566.3:c.544_545del	p.Lys182GlufsTer44	p.K182Efs*44	ENST00000257566	NM_016569.3	182	AAg/g																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43700174	43700174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			493	62	401	0	ENST00000382044.4:c.5713G>A	p.Val1905Met	p.V1905M	ENST00000382044	NM_001141980.1	1905	Gtg/Atg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15935788	15935788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			433	55	308	0	ENST00000268712.3:c.7145A>G	p.Gln2382Arg	p.Q2382R	ENST00000268712	NM_006311.3	2382	cAg/cGg																																																																														
NF2	4771	MSKCC	GRCh37	22	30000013	30000013	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			441	47	395	0	ENST00000338641.4:c.26T>C	p.Met9Thr	p.M9T	ENST00000338641	NM_000268.3	9	aTg/aCg																																																																														
NF2	4771	MSKCC	GRCh37	22	30077457	30077457	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			320	54	304	0	ENST00000338641.4:c.1604T>C	p.Leu535Pro	p.L535P	ENST00000338641	NM_000268.3	535	cTg/cCg																																																																														
TET2	54790	MSKCC	GRCh37	4	106196745	106196745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			366	70	408	0	ENST00000380013.4:c.5078A>G	p.Tyr1693Cys	p.Y1693C	ENST00000380013	NM_001127208.2	1693	tAc/tGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157431605	157431605	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036740-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			563	76	430	0	ENST00000346085.5:c.2282-1G>T		p.X761_splice	ENST00000346085	NM_020732.3	761																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	63	422	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	24	233	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481627	56481627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	80	760	2	ENST00000267101.3:c.662C>T	p.Pro221Leu	p.P221L	ENST00000267101	NM_001982.3	221	cCc/cTc																																																																														
ATM	472	MSKCC	GRCh37	11	108224583	108224583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	28	386	0	ENST00000278616.4:c.8762C>T	p.Thr2921Met	p.T2921M	ENST00000278616	NM_000051.3	2921	aCg/aTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570397	95570397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	36	448	0	ENST00000343455.3:c.3336C>G	p.Asn1112Lys	p.N1112K	ENST00000343455	NM_177438.2	1112	aaC/aaG																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005437	150005437	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144667728		P-0036775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	56	526	0	ENST00000253339.5:c.788C>T	p.Pro263Leu	p.P263L	ENST00000253339		263	cCa/cTa																																																																														
FAM58A	0	MSKCC	GRCh37	X	152864453	152864454	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACC			P-0036775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	11	55	0	ENST00000406277.2:c.69_72dup	p.His25GlyfsTer32	p.H25Gfs*32	ENST00000406277	NM_152274.4	24	-/GGTG																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343093	118343093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	232	449	0	ENST00000534358.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000534358	NM_005933.3	407	Cga/Tga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061241	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACATGTTGCCGGA	GTTCTCGAACATGTTGCCGGA	-			P-0036781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	267	584	0	ENST00000250448.2:c.748_768del	p.Ser250_Asn256del	p.S250_N256del	ENST00000250448	NM_004496.3	250	TCCGGCAACATGTTCGAGAAC/-																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874986	151874993	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATCTT	CTGATCTT	TGC			P-0036781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	68	318	1	ENST00000262189.6:c.7545_7552delinsGCA	p.Arg2516HisfsTer7	p.R2516Hfs*7	ENST00000262189	NM_170606.2	2515	agAAGATCAGta/agGCAta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	552	725	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623120	52623134	+	inframe_deletion	In_Frame_Del	DEL	GATATGTGGTTGTAG	GATATGTGGTTGTAG	-			P-0036830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	168	594	0	ENST00000394830.3:c.2917_2931del	p.Leu973_Ile977del	p.L973_I977del	ENST00000394830	NM_018313.4	973	CTACAACCACATATC/-																																																																														
APC	324	MSKCC	GRCh37	5	112174270	112174271	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0036830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	134	355	20	ENST00000257430.4:c.2982_2983dup	p.Cys995PhefsTer11	p.C995Ffs*11	ENST00000257430	NM_000038.5	993	-/TT																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0036830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	134	385	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
SESN1	27244	MSKCC	GRCh37	6	109319780	109319780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	98	632	0	ENST00000436639.2:c.908G>A	p.Cys303Tyr	p.C303Y	ENST00000436639	NM_014454.2	303	tGt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	217	773	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0037046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	76	344	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40678601	40678601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	241	705	0	ENST00000249776.8:c.343G>C	p.Val115Leu	p.V115L	ENST00000249776	NM_033286.3	115	Gtt/Ctt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0037049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	256	740	1	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068315	30068315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	66	404	0	ENST00000331968.5:c.2084G>C	p.Arg695Pro	p.R695P	ENST00000331968	NM_002742.2	695	cGg/cCg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779461	3779461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	83	843	2	ENST00000262367.5:c.5587C>A	p.Gln1863Lys	p.Q1863K	ENST00000262367	NM_004380.2	1863	Cag/Aag																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719542	190719542	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	102	299	0	ENST00000441310.2:c.1544T>A	p.Val515Glu	p.V515E	ENST00000441310	NM_000534.4	515	gTg/gAg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664910	138664910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	23	157	0	ENST00000330315.3:c.655C>A	p.Gln219Lys	p.Q219K	ENST00000330315	NM_023067.3	219	Cag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721025	176721025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	112	547	0	ENST00000439151.2:c.6656G>T	p.Arg2219Leu	p.R2219L	ENST00000439151	NM_022455.4	2219	cGt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448089	49448089	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0037069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	169	446	0	ENST00000301067.7:c.510+1G>T		p.X170_splice	ENST00000301067	NM_003482.3	170																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061130	38061192	+	inframe_deletion	In_Frame_Del	DEL	CGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGA	CGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGA	-			P-0037069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	146	76	0	ENST00000250448.2:c.797_859del	p.Phe266_Ala287delinsSer	p.F266_A287delinsS	ENST00000250448	NM_004496.3	266	tTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGcc/tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	158	726	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99156051	99156051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	48	594	1	ENST00000074304.5:c.731G>A	p.Arg244Gln	p.R244Q	ENST00000074304	NM_001134224.1	244	cGg/cAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259526	89259526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	65	449	1	ENST00000336596.2:c.670G>T	p.Val224Leu	p.V224L	ENST00000336596	NM_005233.5	224	Gtg/Ttg																																																																														
STK40	83931	MSKCC	GRCh37	1	36820917	36820917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182214010		P-0037070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	109	648	0	ENST00000373129.3:c.460G>A	p.Ala154Thr	p.A154T	ENST00000373129	NM_032017.1	154	Gct/Act																																																																														
RET	5979	MSKCC	GRCh37	10	43615171	43615171	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	67	664	0	ENST00000355710.3:c.2585T>C	p.Met862Thr	p.M862T	ENST00000355710	NM_020975.4	862	aTg/aCg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047314	77047314	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	37	430	0	ENST00000356341.3:c.1230C>G	p.Phe410Leu	p.F410L	ENST00000356341	NM_002576.4	410	ttC/ttG																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985449	2985484	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTACCCACAATGGTGGAGAATCTCCGAGTGGGCTCT	TTACCCACAATGGTGGAGAATCTCCGAGTGGGCTCT	-			P-0037070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	32	354	0	ENST00000396946.4:c.327_358+4del		p.X109_splice	ENST00000396946	NM_032415.4	109																																																																															
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	56	755	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	29	574	1	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	24	716	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	62	815	1	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200218	123200218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	21	310	0	ENST00000218089.9:c.2197G>A	p.Ala733Thr	p.A733T	ENST00000218089	NM_001042749.1	733	Gca/Aca																																																																														
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	37	354	0	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42040967	42040967	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	54	770	0	ENST00000219905.7:c.5345T>G	p.Leu1782Arg	p.L1782R	ENST00000219905	NM_001164273.1	1782	cTt/cGt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729208	66729208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	42	746	0	ENST00000307102.5:c.416T>C	p.Ile139Thr	p.I139T	ENST00000307102	NM_002755.3	139	aTc/aCc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117868	70117868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	24	382	0	ENST00000245479.2:c.336C>A	p.Phe112Leu	p.F112L	ENST00000245479	NM_000346.3	112	ttC/ttA																																																																														
MSH2	4436	MSKCC	GRCh37	2	47635599	47635599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	52	595	0	ENST00000233146.2:c.271G>T	p.Asp91Tyr	p.D91Y	ENST00000233146	NM_000251.2	91	Gat/Tat																																																																														
MST1	4485	MSKCC	GRCh37	3	49723613	49723613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	10	140	0	ENST00000449682.2:c.1029G>T	p.Glu343Asp	p.E343D	ENST00000449682	NM_020998.3	343	gaG/gaT																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114763	73114763	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	11	149	0	ENST00000356692.5:c.1144G>T	p.Glu382Ter	p.E382*	ENST00000356692		382	Gaa/Taa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20490528	20490528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	73	645	0	ENST00000346618.3:c.1265T>G	p.Phe422Cys	p.F422C	ENST00000346618	NM_001949.4	422	tTt/tGt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038531	47038531	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	28	354	0	ENST00000329236.7:c.462G>T	p.Glu154Asp	p.E154D	ENST00000329236	NM_001204466.1	154	gaG/gaT																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247007	53247007	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	39	283	0	ENST00000375401.3:c.493G>T	p.Glu165Ter	p.E165*	ENST00000375401	NM_004187.3	165	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938710	76938710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	27	411	0	ENST00000373344.5:c.2038G>A	p.Glu680Lys	p.E680K	ENST00000373344	NM_000489.3	680	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	143	532	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979529	7979529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	176	694	0	ENST00000319144.4:c.1496G>A	p.Arg499His	p.R499H	ENST00000319144	NM_001139.2	499	cGc/cAc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45375016	45375016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	128	418	0	ENST00000262160.6:c.827C>T	p.Ser276Leu	p.S276L	ENST00000262160	NM_005901.5	276	tCg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0037075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	120	399	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	73	299	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	89	343	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	160	523	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	483	516	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
BARD1	580	MSKCC	GRCh37	2	215657039	215657039	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144856889		P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	104	288	0	ENST00000260947.4:c.346C>T	p.His116Tyr	p.H116Y	ENST00000260947	NM_000465.2	116	Cat/Tat																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178097304	178097304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	149	224	0	ENST00000397062.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000397062	NM_006164.4	137	tCg/tTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	142	232	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	142	232	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	142	232	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602923	10602923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	311	639	0	ENST00000171111.5:c.655G>C	p.Glu219Gln	p.E219Q	ENST00000171111	NM_203500.1	219	Gag/Cag																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732494	74732494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	90	132	0	ENST00000359995.5:c.415C>T	p.Arg139Cys	p.R139C	ENST00000359995	NM_001195427.1	139	Cgc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733217	40733217	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	278	461	1	ENST00000373198.4:c.3589G>T	p.Glu1197Ter	p.E1197*	ENST00000373198	NM_133170.3	1197	Gaa/Taa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021503	31021503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	253	416	0	ENST00000375687.4:c.1502C>G	p.Ser501Cys	p.S501C	ENST00000375687	NM_015338.5	501	tCt/tGt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31409360	31409360	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	98	330	0	ENST00000344624.3:c.3747G>T	p.Leu1249Phe	p.L1249F	ENST00000344624		1249	ttG/ttT																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31409384	31409384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	98	331	0	ENST00000344624.3:c.3723G>A	p.Met1241Ile	p.M1241I	ENST00000344624		1241	atG/atA																																																																														
JAK2	3717	MSKCC	GRCh37	9	5073762	5073762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	192	366	0	ENST00000381652.3:c.1841G>A	p.Gly614Glu	p.G614E	ENST00000381652	NM_004972.3	614	gGa/gAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485880	8485880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	158	320	0	ENST00000356435.5:c.2937G>A	p.Met979Ile	p.M979I	ENST00000356435		979	atG/atA																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625405	69625440	+	inframe_deletion	In_Frame_Del	DEL	CATACGTATTATAGCCCAGCTCGTGGATCCGCTCCA	CATACGTATTATAGCCCAGCTCGTGGATCCGCTCCA	-			P-0037122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	29	701	0	ENST00000334134.2:c.353_388del	p.Val118_Tyr129del	p.V118_Y129del	ENST00000334134	NM_005247.2	118	gTGGAGCGGATCCACGAGCTGGGCTATAATACGTATGcc/gcc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396985	396985	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	54	743	0	ENST00000262320.3:c.41C>G	p.Ala14Gly	p.A14G	ENST00000262320	NM_003502.3	14	gCa/gGa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696748	47696748	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0037122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	20	307	0	ENST00000347630.2:c.201-1G>T		p.X67_splice	ENST00000347630	NM_001007230.1	67																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0037178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	160	391	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
STAT3	6774	MSKCC	GRCh37	17	40485961	40485961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	422	602	0	ENST00000264657.5:c.904C>T	p.Arg302Trp	p.R302W	ENST00000264657	NM_139276.2	302	Cgg/Tgg																																																																														
SDHA	6389	MSKCC	GRCh37	5	228399	228399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	90	499	0	ENST00000264932.6:c.721G>A	p.Asp241Asn	p.D241N	ENST00000264932	NM_004168.2	241	Gac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037181-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			253	28	528	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0037181-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			545	184	978	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037181-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			391	42	523	0	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206650114	206650114	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037181-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			624	184	784	1	ENST00000367120.3:c.634T>C	p.Tyr212His	p.Y212H	ENST00000367120	NM_014002.3	212	Tac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0037196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	313	674	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
MRE11A	0	MSKCC	GRCh37	11	94163118	94163118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	59	494	0	ENST00000323929.3:c.2029C>G	p.Gln677Glu	p.Q677E	ENST00000323929	NM_005591.3	677	Cag/Gag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865189	57865189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	147	740	0	ENST00000228682.2:c.2666C>T	p.Ser889Phe	p.S889F	ENST00000228682	NM_005269.2	889	tCc/tTc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41239900	41240077	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCGGCTGCCCCGCGAGCGGCCCAGCGGCGGCGGGGGGCACCGGCGGGTGCTGCGACAGCGGCCCGGGCGGCGGGGGCTGCGGTGGCGCTGGGTGCAGGCAGCCCGCCTCCGGGCCCTGGAAGTCCCCGCACAGCCCCCCGGTGGCGGCCGCGGCGGCCGCCGCCGCCACCGCCGCC	GCGCGGCTGCCCCGCGAGCGGCCCAGCGGCGGCGGGGGGCACCGGCGGGTGCTGCGACAGCGGCCCGGGCGGCGGGGGCTGCGGTGGCGCTGGGTGCAGGCAGCCCGCCTCCGGGCCCTGGAAGTCCCCGCACAGCCCCCCGGTGGCGGCCGCGGCGGCCGCCGCCGCCACCGCCGCC	-			P-0037196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	247	207	0	ENST00000379561.5:c.273_450del	p.Ala92ArgfsTer182	p.A92Rfs*182	ENST00000379561	NM_002015.3	91	gcGGCGGCGGTGGCGGCGGCGGCCGCCGCGGCCGCCACCGGGGGGCTGTGCGGGGACTTCCAGGGCCCGGAGGCGGGCTGCCTGCACCCAGCGCCACCGCAGCCCCCGCCGCCCGGGCCGCTGTCGCAGCACCCGCCGGTGCCCCCCGCCGCCGCTGGGCCGCTCGCGGGGCAGCCGCGC/gc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37667847	37667847	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	141	471	0	ENST00000447079.4:c.2732A>T	p.Glu911Val	p.E911V	ENST00000447079	NM_015083.1	911	gAa/gTa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48586253	48586253	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	162	497	0	ENST00000342988.3:c.922C>G	p.Leu308Val	p.L308V	ENST00000342988	NM_005359.5	308	Ctt/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	241	595	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	123	358	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42798379	42798379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	97	575	1	ENST00000575354.2:c.4250G>T	p.Arg1417Leu	p.R1417L	ENST00000575354	NM_015125.3	1417	cGc/cTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658481	3658481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140876043		P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	96	658	1	ENST00000294008.3:c.485C>T	p.Thr162Met	p.T162M	ENST00000294008	NM_032444.2	162	aCg/aTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710654	114710655	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	58	360	0	ENST00000543371.1:c.142_143del	p.Leu48SerfsTer3	p.L48Sfs*3	ENST00000543371	NM_001198531.1	47	TCt/t																																																																														
WHSC1	0	MSKCC	GRCh37	4	1940187	1940187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	18	138	0	ENST00000382891.5:c.1684A>G	p.Ile562Val	p.I562V	ENST00000382891	NM_133335.3	562	Atc/Gtc																																																																														
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0037243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	57	339	0	ENST00000257430.4:c.4462_4463dup	p.Leu1488PhefsTer20	p.L1488Ffs*20	ENST00000257430	NM_000038.5	1487	act/acTTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0037291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	48	557	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	9	649	1	ENST00000269305.4:c.328C>T	p.Arg110Cys	p.R110C	ENST00000269305	NM_001126112.2	110	Cgt/Tgt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879657	37879657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	9	674	1	ENST00000269571.5:c.2032C>T	p.Arg678Trp	p.R678W	ENST00000269571		678	Cgg/Tgg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815655	139815655	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	46	559	0	ENST00000247668.2:c.1126A>G	p.Ile376Val	p.I376V	ENST00000247668	NM_021138.3	376	Atc/Gtc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170837	11170837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	172	646	0	ENST00000344626.4:c.4885G>A	p.Asp1629Asn	p.D1629N	ENST00000344626	NM_003072.3	1629	Gat/Aat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199627	16199627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	298	549	0	ENST00000375759.3:c.400G>A	p.Asp134Asn	p.D134N	ENST00000375759	NM_015001.2	134	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023307	27023358	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCGCGGCCGCCTTGCCGCCCCCAGCCTACGGCTTCGGGCAACCCTACGG	CAGCCGCGGCCGCCTTGCCGCCCCCAGCCTACGGCTTCGGGCAACCCTACGG	-			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	53	47	0	ENST00000324856.7:c.414_465del	p.Ala139GlyfsTer76	p.A139Gfs*76	ENST00000324856	NM_006015.4	138	tCAGCCGCGGCCGCCTTGCCGCCCCCAGCCTACGGCTTCGGGCAACCCTACGGc/tc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089463	27089476	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGTGGCTACCCCAG	GGTGGCTACCCCAG	-			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	290	649	0	ENST00000324856.7:c.2420_2433del		p.X807_splice	ENST00000324856	NM_006015.4	807																																																																															
MCL1	4170	MSKCC	GRCh37	1	150551514	150551514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	486	810	1	ENST00000369026.2:c.493C>T	p.Pro165Ser	p.P165S	ENST00000369026	NM_021960.4	165	Ccg/Tcg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012334	176012334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	358	465	0	ENST00000367669.3:c.1600G>A	p.Asp534Asn	p.D534N	ENST00000367669	NM_022457.5	534	Gat/Aat																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982408	201982408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	493	744	0	ENST00000359651.3:c.787G>A	p.Gly263Ser	p.G263S	ENST00000359651		263	Ggc/Agc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982998	201982998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	509	874	0	ENST00000359651.3:c.847C>G	p.Leu283Val	p.L283V	ENST00000359651		283	Ctc/Gtc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975687	26975687	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	289	536	0	ENST00000381527.3:c.1199del	p.Pro400ArgfsTer2	p.P400Rfs*2	ENST00000381527	NM_001260.1	399	Ccc/cc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435277	110435277	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	62	147	0	ENST00000375856.3:c.3124T>C	p.Tyr1042His	p.Y1042H	ENST00000375856	NM_003749.2	1042	Tac/Cac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923397	9923397	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	52	779	0	ENST00000330684.3:c.1890G>C	p.Met630Ile	p.M630I	ENST00000330684	NM_001134407.1	630	atG/atC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831701	72831701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	162	817	0	ENST00000268489.5:c.4880C>T	p.Ala1627Val	p.A1627V	ENST00000268489	NM_006885.3	1627	gCc/gTc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216439	7216439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	430	738	1	ENST00000380728.2:c.809C>T	p.Ser270Phe	p.S270F	ENST00000380728		270	tCt/tTt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855787	45855787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	237	698	1	ENST00000391945.4:c.2023G>T	p.Gly675Cys	p.G675C	ENST00000391945	NM_000400.3	675	Ggc/Tgc																																																																														
ALK	238	MSKCC	GRCh37	2	30143185	30143185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	207	392	0	ENST00000389048.3:c.341C>T	p.Ser114Leu	p.S114L	ENST00000389048	NM_004304.4	114	tCa/tTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989584	212989584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	24	409	0	ENST00000342788.4:c.127G>A	p.Glu43Lys	p.E43K	ENST00000342788	NM_005235.2	43	Gaa/Aaa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225365149	225365149	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	343	621	0	ENST00000264414.4:c.1541C>G	p.Pro514Arg	p.P514R	ENST00000264414	NM_003590.4	514	cCc/cGc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12393110	12393110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	353	721	0	ENST00000287820.6:c.19G>A	p.Asp7Asn	p.D7N	ENST00000287820	NM_015869.4	7	Gat/Aat																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114806	73114806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	25	3	0	ENST00000356692.5:c.1187C>T	p.Ser396Leu	p.S396L	ENST00000356692		396	tCa/tTa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138375052	138375052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	387	612	0	ENST00000289153.2:c.3007C>G	p.Leu1003Val	p.L1003V	ENST00000289153	NM_006219.2	1003	Ctc/Gtc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430354	181430354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	245	365	0	ENST00000325404.1:c.206C>T	p.Ser69Leu	p.S69L	ENST00000325404	NM_003106.3	69	tCg/tTg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562641	176562641	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	188	691	0	ENST00000439151.2:c.537T>A	p.Ser179Arg	p.S179R	ENST00000439151	NM_022455.4	179	agT/agA																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056047	26056047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	281	499	0	ENST00000343677.2:c.610A>G	p.Lys204Glu	p.K204E	ENST00000343677	NM_005319.3	204	Aag/Gag																																																																														
CCND3	896	MSKCC	GRCh37	6	41908153	41908153	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	192	763	0	ENST00000372991.4:c.369A>C	p.Lys123Asn	p.K123N	ENST00000372991	NM_001760.3	123	aaA/aaC																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157470057	157470057	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	109	465	0	ENST00000346085.5:c.2851C>T	p.Gln951Ter	p.Q951*	ENST00000346085	NM_020732.3	951	Cag/Tag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38172288	38172288	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	104	496	0	ENST00000317025.8:c.2119T>C	p.Cys707Arg	p.C707R	ENST00000317025	NM_023034.1	707	Tgt/Cgt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38194966	38194966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	360	588	1	ENST00000317025.8:c.767C>A	p.Ser256Tyr	p.S256Y	ENST00000317025	NM_023034.1	256	tCt/tAt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370837	55370837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	458	285	0	ENST00000297316.4:c.139G>A	p.Glu47Lys	p.E47K	ENST00000297316	NM_022454.3	47	Gag/Aag																																																																														
MYC	4609	MSKCC	GRCh37	8	128750578	128750578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	724	743	0	ENST00000377970.2:c.115T>C	p.Tyr39His	p.Y39H	ENST00000377970	NM_002467.4	39	Tac/Cac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139438531	139438531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	452	825	0	ENST00000277541.6:c.85G>A	p.Glu29Lys	p.E29K	ENST00000277541	NM_017617.3	29	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922669	44922669	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	270	211	0	ENST00000377967.4:c.1530G>A	p.Met510Ile	p.M510I	ENST00000377967	NM_021140.2	510	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	474	668	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111921750	111921750	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185078669		P-0037342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	180	462	0	ENST00000393256.3:c.539G>A	p.Arg180Gln	p.R180Q	ENST00000393256	NM_006538.4	180	cGa/cAa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980453	7980453	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	154	605	1	ENST00000319144.4:c.1130A>T	p.Asp377Val	p.D377V	ENST00000319144	NM_001139.2	377	gAc/gTc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47635635	47635635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	213	596	0	ENST00000233146.2:c.307T>C	p.Tyr103His	p.Y103H	ENST00000233146	NM_000251.2	103	Tat/Cat																																																																														
SRC	6714	MSKCC	GRCh37	20	36024685	36024685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	161	705	0	ENST00000358208.4:c.674G>T	p.Ser225Ile	p.S225I	ENST00000358208		225	aGc/aTc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927399	49927399	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	153	678	0	ENST00000296474.3:c.3905A>T	p.Gln1302Leu	p.Q1302L	ENST00000296474	NM_002447.2	1302	cAg/cTg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460432	149460432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	261	716	0	ENST00000286301.3:c.205C>T	p.Leu69Phe	p.L69F	ENST00000286301	NM_005211.3	69	Ctc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0037369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	118	543	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249020	55249020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	272	394	0	ENST00000275493.2:c.2318A>G	p.His773Arg	p.H773R	ENST00000275493	NM_005228.3	773	cAc/cGc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857875	9857875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	122	549	0	ENST00000330684.3:c.3526G>A	p.Glu1176Lys	p.E1176K	ENST00000330684	NM_001134407.1	1176	Gag/Aag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131927659	131927666	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGAAGA	CTTGAAGA	-			P-0037369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	19	240	0	ENST00000265335.6:c.1728_1735del	p.Glu577AlafsTer3	p.E577Afs*3	ENST00000265335		576	CTTGAAGAc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	32	391	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	41	534	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	47	481	1	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420606	49420606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	41	568	1	ENST00000301067.7:c.15143G>T	p.Arg5048Leu	p.R5048L	ENST00000301067	NM_003482.3	5048	cGt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	701	676	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
MYC	4609	MSKCC	GRCh37	8	128752651	128752653	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0037425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	47	231	0	ENST00000377970.2:c.816_818del	p.Glu272del	p.E272del	ENST00000377970	NM_002467.4	271	cAAGaa/caa																																																																														
NF2	4771	MSKCC	GRCh37	22	30032865	30032869	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTTG	GGTTG	-			P-0037425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	192	276	0	ENST00000338641.4:c.240+2_240+6del		p.X80_splice	ENST00000338641	NM_000268.3	80																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0037460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	535	753	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589738	69589738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	23	95	0	ENST00000168712.1:c.115C>A	p.Leu39Met	p.L39M	ENST00000168712	NM_002007.2	39	Ctg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	379	569	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087346	27087346	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0037462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	218	373	0	ENST00000324856.7:c.1921-1G>C		p.X641_splice	ENST00000324856	NM_006015.4	641																																																																															
NF1	4763	MSKCC	GRCh37	17	29508482	29508482	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	111	301	0	ENST00000358273.4:c.629T>A	p.Leu210Ter	p.L210*	ENST00000358273	NM_001042492.2	210	tTa/tAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29559859	29559859	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	74	252	0	ENST00000358273.4:c.3456A>C	p.Leu1152Phe	p.L1152F	ENST00000358273	NM_001042492.2	1152	ttA/ttC																																																																														
FLT4	2324	MSKCC	GRCh37	5	180041119	180041119	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	198	675	2	ENST00000261937.6:c.3280C>T	p.Gln1094Ter	p.Q1094*	ENST00000261937	NM_182925.4	1094	Cag/Tag																																																																														
FYN	2534	MSKCC	GRCh37	6	112024168	112024168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	137	410	0	ENST00000368678.4:c.617G>T	p.Arg206Leu	p.R206L	ENST00000368678		206	cGc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	138	435	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0037469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	78	286	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942085	81942085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	56	692	3	ENST00000359376.3:c.1622C>T	p.Thr541Met	p.T541M	ENST00000359376	NM_002661.3	541	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100916	27100947	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCAGCAGCAGCAGTTGCCCCCAGCCCAGCC	CCTCAGCAGCAGCAGTTGCCCCCAGCCCAGCC	-			P-0037469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	113	670	0	ENST00000324856.7:c.4200_4231del	p.Gln1401AlafsTer33	p.Q1401Afs*33	ENST00000324856	NM_006015.4	1400	CCTCAGCAGCAGCAGTTGCCCCCAGCCCAGCCc/c																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692778	89692778	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	205	338	0	ENST00000371953.3:c.262del	p.Tyr88IlefsTer11	p.Y88Ifs*11	ENST00000371953	NM_000314.4	88	Tat/at																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376780	31376780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	95	587	2	ENST00000328111.2:c.775C>T	p.Arg259Trp	p.R259W	ENST00000328111	NM_006892.3	259	Cgg/Tgg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589561	67589614	+	inframe_deletion	In_Frame_Del	DEL	ATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAAAA	ATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAAAA	-			P-0037469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	18	126	0	ENST00000274335.5:c.1325_1378del	p.Ile442_Lys459del	p.I442_K459del	ENST00000274335		442	ATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAAAA/-																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589577	67589582	+	inframe_deletion	In_Frame_Del	DEL	AAAAAT	AAAAAT	-			P-0037469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	15	154	0	ENST00000274335.5:c.1340_1345del	p.Lys447_Leu449delinsIle	p.K447_L449delinsI	ENST00000274335		447	aAAAAATta/ata																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929077	44929077	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs2230018		P-0037472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	18	300	1	ENST00000377967.4:c.2177C>A	p.Thr726Lys	p.T726K	ENST00000377967	NM_021140.2	726	aCg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	83	697	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TP53	7157	MSKCC	GRCh37	17	7577600	7577601	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0037478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	226	570	0	ENST00000269305.4:c.680_681del	p.Ser227Ter	p.S227*	ENST00000269305	NM_001126112.2	227	tCT/t																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992592	72992592	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	103	569	1	ENST00000268489.5:c.1453G>T	p.Glu485Ter	p.E485*	ENST00000268489	NM_006885.3	485	Gag/Tag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948759	17948759	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	72	753	0	ENST00000458235.1:c.1683G>C	p.Lys561Asn	p.K561N	ENST00000458235	NM_000215.3	561	aaG/aaC																																																																														
AR	367	MSKCC	GRCh37	X	66765800	66765800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	172	909	1	ENST00000374690.3:c.812C>T	p.Pro271Leu	p.P271L	ENST00000374690	NM_000044.3	271	cCa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	9	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	132	439	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	23	272	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217330	11217330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	183	607	0	ENST00000361445.4:c.4348T>G	p.Tyr1450Asp	p.Y1450D	ENST00000361445	NM_004958.3	1450	Tat/Gat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	289	446	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	378	515	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
CDH1	999	MSKCC	GRCh37	16	68844181	68844181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	342	512	0	ENST00000261769.5:c.769G>T	p.Asp257Tyr	p.D257Y	ENST00000261769	NM_004360.3	257	Gac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	172	280	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223028	41223028	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	426	633	1	ENST00000357654.3:c.4903G>T	p.Glu1635Ter	p.E1635*	ENST00000357654	NM_007294.3	1635	Gag/Tag																																																																														
MGA	23269	MSKCC	GRCh37	15	42000387	42000388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	229	329	0	ENST00000219905.7:c.2406_2407insC	p.Ser803LeufsTer4	p.S803Lfs*4	ENST00000219905	NM_001164273.1	802	-/C																																																																														
NF1	4763	MSKCC	GRCh37	17	29652877	29652898	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGTCTTACTGACTTTAAAG	CCATGTCTTACTGACTTTAAAG	-			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	200	261	1	ENST00000358273.4:c.4879_4900del	p.Val1627IlefsTer9	p.V1627Ifs*9	ENST00000358273	NM_001042492.2	1625	taCCATGTCTTACTGACTTTAAAG/ta																																																																														
WHSC1	0	MSKCC	GRCh37	4	1961340	1961340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	408	486	1	ENST00000382891.5:c.3128C>T	p.Pro1043Leu	p.P1043L	ENST00000382891	NM_133335.3	1043	cCg/cTg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721264	176721264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	215	321	0	ENST00000439151.2:c.6895C>T	p.Leu2299Phe	p.L2299F	ENST00000439151	NM_022455.4	2299	Ctc/Ttc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106524696	106524696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	89	320	0	ENST00000359195.3:c.2857A>G	p.Met953Val	p.M953V	ENST00000359195	NM_002649.2	953	Atg/Gtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	163	488	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	198	622	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	124	380	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112170865	112170865	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	114	360	0	ENST00000257430.4:c.1958+3A>G		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117873	70117873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	192	390	0	ENST00000245479.2:c.341T>C	p.Val114Ala	p.V114A	ENST00000245479	NM_000346.3	114	gTg/gCg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581158	48581158	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	87	265	0	ENST00000342988.3:c.463del	p.Ser155ValfsTer2	p.S155Vfs*2	ENST00000342988	NM_005359.5	154	tcA/tc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250056	39250056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	59	575	0	ENST00000402219.2:c.1513G>C	p.Asp505His	p.D505H	ENST00000402219	NM_005633.3	505	Gat/Cat																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713733	30713733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	71	324	0	ENST00000359013.4:c.1133C>T	p.Ser378Phe	p.S378F	ENST00000359013	NM_001024847.2	378	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0037534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	352	764	1	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																														
RB1	5925	MSKCC	GRCh37	13	48951156	48951156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	104	509	0	ENST00000267163.4:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000267163	NM_000321.2	440	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212615396	212615396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	100	545	0	ENST00000342788.4:c.590G>T	p.Cys197Phe	p.C197F	ENST00000342788	NM_005235.2	197	tGc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524363	187524363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	140	584	0	ENST00000441802.2:c.11317C>T	p.Arg3773Cys	p.R3773C	ENST00000441802	NM_005245.3	3773	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0037620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	132	266	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349640	89349641	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	270	663	14	ENST00000301030.4:c.3309dupA	p.Asp1104ArgfsTer2	p.D1104Rfs*2	ENST00000301030	NM_001256183.1	1103	-/A																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2097822	2097822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	225	380	1	ENST00000219066.1:c.27G>A	p.Met9Ile	p.M9I	ENST00000219066	NM_002528.5	9	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0037624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	415	635	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032111	26032111	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	101	276	0	ENST00000244661.2:c.178G>T	p.Glu60Ter	p.E60*	ENST00000244661	NM_003537.3	60	Gag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170070	32170070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	241	687	0	ENST00000375023.3:c.3538G>A	p.Gly1180Ser	p.G1180S	ENST00000375023	NM_004557.3	1180	Ggc/Agc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68989698	68989698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	67	539	0	ENST00000288368.4:c.1636C>G	p.His546Asp	p.H546D	ENST00000288368	NM_024870.2	546	Cac/Gac																																																																														
RAD52	5893	MSKCC	GRCh37	12	1040408	1040408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	38	610	2	ENST00000358495.3:c.164G>A	p.Arg55His	p.R55H	ENST00000358495	NM_134424.2	55	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	23	636	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	81	687	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
STK40	83931	MSKCC	GRCh37	1	36824418	36824418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	32	562	0	ENST00000373129.3:c.118C>T	p.Arg40Cys	p.R40C	ENST00000373129	NM_032017.1	40	Cgt/Tgt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	37	660	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	44	482	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157525060	157525060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	35	408	0	ENST00000346085.5:c.4955C>T	p.Thr1652Met	p.T1652M	ENST00000346085	NM_020732.3	1652	aCg/aTg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198272772	198272772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	43	682	0	ENST00000335508.6:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000335508	NM_012433.2	397	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	45	752	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	58	561	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																														
BARD1	580	MSKCC	GRCh37	2	215593651	215593651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	44	415	0	ENST00000260947.4:c.2083G>A	p.Val695Ile	p.V695I	ENST00000260947	NM_000465.2	695	Gtc/Atc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	38	367	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944947	31944947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	24	437	0	ENST00000340398.3:c.154C>T	p.Arg52Cys	p.R52C	ENST00000340398	NM_001013699.2	52	Cgt/Tgt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	44	735	2	ENST00000340748.4:c.2152delA	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																														
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	24	523	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277225	41277225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	23	356	0	ENST00000349496.5:c.1694G>A	p.Arg565His	p.R565H	ENST00000349496	NM_001904.3	565	cGc/cAc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	43	429	0	ENST00000374542.5:c.767G>A	p.Arg256His	p.R256H	ENST00000374542	NM_001141970.1	256	cGc/cAc																																																																														
SDHA	6389	MSKCC	GRCh37	5	235390	235390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	41	608	0	ENST00000264932.6:c.1196C>T	p.Pro399Leu	p.P399L	ENST00000264932	NM_004168.2	399	cCg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101138	27101138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	44	648	0	ENST00000324856.7:c.4420C>T	p.Gln1474Ter	p.Q1474*	ENST00000324856	NM_006015.4	1474	Caa/Taa																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732318	74732318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	64	297	0	ENST00000359995.5:c.591G>T	p.Lys197Asn	p.K197N	ENST00000359995	NM_001195427.1	197	aaG/aaT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3801726	3801726	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	52	464	1	ENST00000262367.5:c.3779+1G>A		p.X1260_splice	ENST00000262367	NM_004380.2	1260																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	27	723	2	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717712	89717712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	51	455	0	ENST00000371953.3:c.737C>T	p.Pro246Leu	p.P246L	ENST00000371953	NM_000314.4	246	cCg/cTg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48032123	48032124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	40	465	0	ENST00000234420.5:c.3514dup	p.Arg1172LysfsTer5	p.R1172Kfs*5	ENST00000234420	NM_000179.2	1171	-/A																																																																														
DIS3	22894	MSKCC	GRCh37	13	73352354	73352354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	61	655	0	ENST00000377767.4:c.551C>T	p.Ala184Val	p.A184V	ENST00000377767	NM_014953.3	184	gCc/gTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2978455	2978455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	20	620	0	ENST00000396946.4:c.875G>A	p.Arg292His	p.R292H	ENST00000396946	NM_032415.4	292	cGc/cAc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39278407	39278407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	55	696	2	ENST00000402219.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000402219	NM_005633.3	248	Cgc/Tgc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38139044	38139044	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	81	721	1	ENST00000317025.8:c.3559C>T	p.Arg1187Ter	p.R1187*	ENST00000317025	NM_023034.1	1187	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210754	5210754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	18	671	0	ENST00000357368.4:c.5297G>A	p.Arg1766His	p.R1766H	ENST00000357368	NM_002850.3	1766	cGc/cAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348413	89348413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	20	803	1	ENST00000301030.4:c.4537G>A	p.Val1513Met	p.V1513M	ENST00000301030	NM_001256183.1	1513	Gtg/Atg																																																																														
ALK	238	MSKCC	GRCh37	2	29754886	29754886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	16	464	0	ENST00000389048.3:c.1049C>T	p.Ser350Leu	p.S350L	ENST00000389048	NM_004304.4	350	tCg/tTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720693	89720693	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	38	184	0	ENST00000371953.3:c.844G>T	p.Gly282Ter	p.G282*	ENST00000371953	NM_000314.4	282	Gga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	29445268	29445268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	16	648	0	ENST00000389048.3:c.3457C>T	p.Pro1153Ser	p.P1153S	ENST00000389048	NM_004304.4	1153	Cct/Tct																																																																														
GNA11	2767	MSKCC	GRCh37	19	3120995	3120995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	15	424	0	ENST00000078429.4:c.898C>T	p.Arg300Trp	p.R300W	ENST00000078429	NM_002067.2	300	Cgg/Tgg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615748	1615748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139492270		P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	17	650	0	ENST00000344749.5:c.1523C>T	p.Thr508Met	p.T508M	ENST00000344749	NM_001136139.2	508	aCg/aTg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940370	49940370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	45	607	1	ENST00000296474.3:c.673G>A	p.Ala225Thr	p.A225T	ENST00000296474	NM_002447.2	225	Gcc/Acc																																																																														
CALR	811	MSKCC	GRCh37	19	13054361	13054361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	89	529	0	ENST00000316448.5:c.971G>A	p.Gly324Asp	p.G324D	ENST00000316448	NM_004343.3	324	gGc/gAc																																																																														
MITF	4286	MSKCC	GRCh37	3	70008503	70008503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	25	313	0	ENST00000352241.4:c.1093G>A	p.Ala365Thr	p.A365T	ENST00000352241	NM_198159.2	365	Gca/Aca																																																																														
STK40	83931	MSKCC	GRCh37	1	36826928	36826928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	39	554	0	ENST00000373129.3:c.6G>T	p.Lys2Asn	p.K2N	ENST00000373129	NM_032017.1	2	aaG/aaT																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45796192	45796192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	27	417	0	ENST00000372115.3:c.1472G>A	p.Cys491Tyr	p.C491Y	ENST00000372115	NM_001048171.1	491	tGt/tAt																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748052	72748052	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	27	507	0	ENST00000357731.5:c.126G>A	p.Trp42Ter	p.W42*	ENST00000357731	NM_173808.2	42	tgG/tgA																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115262222	115262222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	51	371	2	ENST00000438362.2:c.2332G>A	p.Ala778Thr	p.A778T	ENST00000438362	NM_001242891.1	778	Gcc/Acc																																																																														
ATM	472	MSKCC	GRCh37	11	108175581	108175581	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	43	340	0	ENST00000278616.4:c.5674+2T>C		p.X1892_splice	ENST00000278616	NM_000051.3	1892																																																																															
CBL	867	MSKCC	GRCh37	11	119170327	119170327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	23	274	1	ENST00000264033.4:c.2557G>A	p.Ala853Thr	p.A853T	ENST00000264033	NM_005188.3	853	Gcc/Acc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644599	21644599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	55	612	0	ENST00000421138.2:c.68T>C	p.Ile23Thr	p.I23T	ENST00000421138		23	aTt/aCt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888240	112888240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	29	511	1	ENST00000351677.2:c.256G>A	p.Gly86Arg	p.G86R	ENST00000351677	NM_002834.3	86	Ggg/Agg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103525652	103525652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	36	443	0	ENST00000355739.4:c.2923G>A	p.Glu975Lys	p.E975K	ENST00000355739	NM_000123.3	975	Gaa/Aaa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061021	38061021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	14	204	0	ENST00000250448.2:c.968C>T	p.Ala323Val	p.A323V	ENST00000250448	NM_004496.3	323	gCg/gTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42035347	42035347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	47	487	0	ENST00000219905.7:c.5189G>A	p.Ser1730Asn	p.S1730N	ENST00000219905	NM_001164273.1	1730	aGt/aAt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3656571	3656571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	39	847	1	ENST00000294008.3:c.664G>A	p.Glu222Lys	p.E222K	ENST00000294008	NM_032444.2	222	Gag/Aag																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984289	7984289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	21	528	0	ENST00000319144.4:c.440G>A	p.Arg147Gln	p.R147Q	ENST00000319144	NM_001139.2	147	cGa/cAa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78599576	78599576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	22	446	0	ENST00000306801.3:c.248G>A	p.Arg83His	p.R83H	ENST00000306801	NM_020761.2	83	cGc/cAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272452	15272452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	40	849	0	ENST00000263388.2:c.5987C>T	p.Ala1996Val	p.A1996V	ENST00000263388	NM_000435.2	1996	gCc/gTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18960942	18960942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	28	640	0	ENST00000262803.5:c.520G>A	p.Gly174Arg	p.G174R	ENST00000262803	NM_002911.3	174	Ggg/Agg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968184	18968184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	25	574	1	ENST00000262803.5:c.2024C>T	p.Ala675Val	p.A675V	ENST00000262803	NM_002911.3	675	gCg/gTg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39214697	39214697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	37	446	0	ENST00000402219.2:c.3427G>T	p.Gly1143Cys	p.G1143C	ENST00000402219	NM_005633.3	1143	Ggc/Tgc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250172	39250172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	65	797	0	ENST00000402219.2:c.1397G>T	p.Gly466Val	p.G466V	ENST00000402219	NM_005633.3	466	gGc/gTc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99163099	99163099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	27	495	0	ENST00000074304.5:c.1105G>T	p.Gly369Cys	p.G369C	ENST00000074304	NM_001134224.1	369	Ggt/Tgt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209104638	209104638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	26	533	2	ENST00000345146.2:c.940C>T	p.Arg314Cys	p.R314C	ENST00000345146	NM_005896.2	314	Cgt/Tgt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259390	36259390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	31	431	2	ENST00000300305.3:c.101C>T	p.Ala34Val	p.A34V	ENST00000300305		34	gCc/gTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41523626	41523626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	32	670	0	ENST00000263253.7:c.1042G>A	p.Ala348Thr	p.A348T	ENST00000263253	NM_001429.3	348	Gct/Act																																																																														
EP300	2033	MSKCC	GRCh37	22	41572910	41572910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	37	650	1	ENST00000263253.7:c.5195G>A	p.Arg1732His	p.R1732H	ENST00000263253	NM_001429.3	1732	cGc/cAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277984	41277984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	21	377	0	ENST00000349496.5:c.1948G>T	p.Gly650Cys	p.G650C	ENST00000349496	NM_001904.3	650	Ggt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259590	89259590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	21	430	0	ENST00000336596.2:c.734G>A	p.Ser245Asn	p.S245N	ENST00000336596	NM_005233.5	245	aGt/aAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89456506	89456506	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs139544432		P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	28	509	0	ENST00000336596.2:c.1682A>G	p.Tyr561Cys	p.Y561C	ENST00000336596	NM_005233.5	561	tAt/tGt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670256	134670256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	17	455	1	ENST00000398015.3:c.167G>A	p.Arg56His	p.R56H	ENST00000398015	NM_004441.4	56	cGc/cAc																																																																														
TP63	8626	MSKCC	GRCh37	3	189582062	189582062	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	42	441	0	ENST00000264731.3:c.621G>T	p.Lys207Asn	p.K207N	ENST00000264731	NM_003722.4	207	aaG/aaT																																																																														
WHSC1	0	MSKCC	GRCh37	4	1961390	1961390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	40	525	0	ENST00000382891.5:c.3178C>T	p.Arg1060Cys	p.R1060C	ENST00000382891	NM_133335.3	1060	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1255462	1255462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	14	625	0	ENST00000310581.5:c.3097C>A	p.Leu1033Met	p.L1033M	ENST00000310581	NM_198253.2	1033	Ctg/Atg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31448689	31448689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	45	627	0	ENST00000344624.3:c.2847G>A	p.Met949Ile	p.M949I	ENST00000344624		949	atG/atA																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56183226	56183226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	33	481	0	ENST00000399503.3:c.4136G>T	p.Ser1379Ile	p.S1379I	ENST00000399503	NM_005921.1	1379	aGc/aTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176687017	176687017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	32	504	0	ENST00000439151.2:c.4994C>T	p.Pro1665Leu	p.P1665L	ENST00000439151	NM_022455.4	1665	cCt/cTt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176710893	176710893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	29	548	1	ENST00000439151.2:c.6115C>T	p.Arg2039Cys	p.R2039C	ENST00000439151	NM_022455.4	2039	Cgt/Tgt																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271234	26271234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	46	427	0	ENST00000305910.3:c.379C>T	p.Leu127Phe	p.L127F	ENST00000305910	NM_003534.2	127	Ctc/Ttc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670650	30670650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	44	440	1	ENST00000376406.3:c.5870G>A	p.Arg1957His	p.R1957H	ENST00000376406	NM_014641.2	1957	cGc/cAc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673128	30673128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	32	648	0	ENST00000376406.3:c.3832G>A	p.Val1278Ile	p.V1278I	ENST00000376406	NM_014641.2	1278	Gtc/Atc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287797	33287797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1545	87	876	2	ENST00000374542.5:c.1456G>T	p.Ala486Ser	p.A486S	ENST00000374542	NM_001141970.1	486	Gca/Tca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683840	117683840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	41	600	1	ENST00000368508.3:c.3307G>A	p.Ala1103Thr	p.A1103T	ENST00000368508	NM_002944.2	1103	Gct/Act																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004998	150004998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	38	533	0	ENST00000253339.5:c.1227G>A	p.Met409Ile	p.M409I	ENST00000253339		409	atG/atA																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528505	157528505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	37	588	0	ENST00000346085.5:c.6230C>T	p.Ser2077Leu	p.S2077L	ENST00000346085	NM_020732.3	2077	tCg/tTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509723	106509723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	24	547	0	ENST00000359195.3:c.1717G>A	p.Glu573Lys	p.E573K	ENST00000359195	NM_002649.2	573	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878670	151878670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	19	523	0	ENST00000262189.6:c.6275A>G	p.Asp2092Gly	p.D2092G	ENST00000262189	NM_170606.2	2092	gAt/gGt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372432	55372432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	55	756	0	ENST00000297316.4:c.1122G>T	p.Glu374Asp	p.E374D	ENST00000297316	NM_022454.3	374	gaG/gaT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460534	8460534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	27	521	0	ENST00000356435.5:c.3752T>C	p.Val1251Ala	p.V1251A	ENST00000356435		1251	gTg/gCg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53243872	53243872	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	33	682	1	ENST00000375401.3:c.1121C>T	p.Ala374Val	p.A374V	ENST00000375401	NM_004187.3	374	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0037810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	624	728	0	ENST00000269305.4:c.672+1G>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807978	3808016	+	frameshift_variant	Frame_Shift_Del	DEL	GTATTGCCCTGTGTCCAGCTTCCGCTTGATGGTGGAGAG	GTATTGCCCTGTGTCCAGCTTCCGCTTGATGGTGGAGAG	A			P-0037810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	122	617	0	ENST00000262367.5:c.3403_3441delinsT	p.Leu1135SerfsTer21	p.L1135Sfs*21	ENST00000262367	NM_004380.2	1135	CTCTCCACCATCAAGCGGAAGCTGGACACAGGGCAATAC/T																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	349	541	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0037860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	158	546	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0037860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	136	345	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439698	51439698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	119	406	0	ENST00000262662.1:c.263C>G	p.Thr88Ser	p.T88S	ENST00000262662		88	aCt/aGt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222174	5222174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	256	601	0	ENST00000357368.4:c.3161G>T	p.Trp1054Leu	p.W1054L	ENST00000357368	NM_002850.3	1054	tGg/tTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210523	36211102	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTAGCCTCTGTCAGTTGCCGAATGTGTTCTGTGTTCAGAGTCCAAGCTAGTCTGGGCAGCGGGGGAAACACACAAGCAAGACTTAGTCCCTGCCCTCCTGGAGCGCCTTCCTCTGTGTGTAGGGCTGGCTTGATCCATCTCCCCACAACTATTCTCCTTTTAGGTCGAGCGCCCCGAGGTCGGGGTCGCAAGCATAAGACGACCCCCCTTCCTCCTCCTCGCCTAGCAGATGTGGCTCCTACCCCCCCAAAGACCCCTGCCCGGAAACGGGGTGAGGAAGGCACAGAACGGATGGTGCAGGCACTGACTGAACTTCTCCGGCGGGCCCAGGCACCCCAAGCACCCCGGAGCCGGGCATGTGAGCCCTCCACCCCCCGGCGGTCTCGGGGACGGCCCCCAGGACGGCCAGCAGGCCCCTGCAGGAGGAAGCAGCAAGCAGTAGTGGTGGCAGAAGCAGCTGTGACAATCCCCAAACCTGAGCCCCCACCTCCTGTGGTTCCAGTGAAACATCAGACTGGCAGCTGGAAATGCAAGGAGGGGCCCGGTCCAGGACCTGGGACCCCCAGGCGTGGAGGACAGT	CTAGCCTCTGTCAGTTGCCGAATGTGTTCTGTGTTCAGAGTCCAAGCTAGTCTGGGCAGCGGGGGAAACACACAAGCAAGACTTAGTCCCTGCCCTCCTGGAGCGCCTTCCTCTGTGTGTAGGGCTGGCTTGATCCATCTCCCCACAACTATTCTCCTTTTAGGTCGAGCGCCCCGAGGTCGGGGTCGCAAGCATAAGACGACCCCCCTTCCTCCTCCTCGCCTAGCAGATGTGGCTCCTACCCCCCCAAAGACCCCTGCCCGGAAACGGGGTGAGGAAGGCACAGAACGGATGGTGCAGGCACTGACTGAACTTCTCCGGCGGGCCCAGGCACCCCAAGCACCCCGGAGCCGGGCATGTGAGCCCTCCACCCCCCGGCGGTCTCGGGGACGGCCCCCAGGACGGCCAGCAGGCCCCTGCAGGAGGAAGCAGCAAGCAGTAGTGGTGGCAGAAGCAGCTGTGACAATCCCCAAACCTGAGCCCCCACCTCCTGTGGTTCCAGTGAAACATCAGACTGGCAGCTGGAAATGCAAGGAGGGGCCCGGTCCAGGACCTGGGACCCCCAGGCGTGGAGGACAGT	-			P-0037881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	195	237	0	ENST00000222270.7:c.436+81_854del		p.X146_splice	ENST00000222270	NM_014727.1	146																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843449	156843449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	236	483	0	ENST00000524377.1:c.875C>T	p.Thr292Met	p.T292M	ENST00000524377	NM_002529.3	292	aCg/aTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416668	416668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	102	284	0	ENST00000399788.2:c.3882G>T	p.Lys1294Asn	p.K1294N	ENST00000399788	NM_001042603.1	1294	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578264	7578268	+	frameshift_variant	Frame_Shift_Del	DEL	GATAA	GATAA	-			P-0037891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	257	529	0	ENST00000269305.4:c.581_585delTTATC	p.Leu194ProfsTer13	p.L194Pfs*13	ENST00000269305	NM_001126112.2	194	cTTATC/c																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972860	25972860	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	87	383	0	ENST00000435504.4:c.1565T>G	p.Val522Gly	p.V522G	ENST00000435504		522	gTt/gGt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39234250	39234250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	114	403	0	ENST00000402219.2:c.2595G>C	p.Leu865Phe	p.L865F	ENST00000402219	NM_005633.3	865	ttG/ttC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084153	47084153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	266	350	0	ENST00000409792.3:c.7136C>G	p.Pro2379Arg	p.P2379R	ENST00000409792	NM_014159.6	2379	cCg/cGg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876227	35876227	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	99	468	0	ENST00000303115.3:c.1019T>C	p.Leu340Pro	p.L340P	ENST00000303115	NM_002185.3	340	cTt/cCt																																																																														
HGF	3082	MSKCC	GRCh37	7	81386621	81386621	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0037891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	46	244	0	ENST00000222390.5:c.368-2A>T		p.X123_splice	ENST00000222390	NM_000601.4	123																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859545	151859560	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTCTACTTCTGAAT	TTGTCTACTTCTGAAT	-			P-0037891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	96	373	0	ENST00000262189.6:c.11102_11117del	p.Asn3701SerfsTer13	p.N3701Sfs*13	ENST00000262189	NM_170606.2	3701	aATTCAGAAGTAGACAAg/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	322	543	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	344	264	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508082	106508082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	48	204	0	ENST00000359195.3:c.76C>T	p.Arg26Cys	p.R26C	ENST00000359195	NM_002649.2	26	Cgc/Tgc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861143	57861143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	331	393	1	ENST00000228682.2:c.940C>T	p.Arg314Cys	p.R314C	ENST00000228682	NM_005269.2	314	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175287	112175288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	136	206	0	ENST00000257430.4:c.3999dup	p.Ser1334IlefsTer8	p.S1334Ifs*8	ENST00000257430	NM_000038.5	1332	-/A																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446069	49446069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	441	694	0	ENST00000301067.7:c.1397G>A	p.Arg466His	p.R466H	ENST00000301067	NM_003482.3	466	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992051	72992051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	105	444	0	ENST00000268489.5:c.1994G>T	p.Arg665Leu	p.R665L	ENST00000268489	NM_006885.3	665	cGt/cTt																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260142	149260142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	86	345	0	ENST00000360632.3:c.751C>T	p.Gln251Ter	p.Q251*	ENST00000360632	NM_015472.4	251	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	301	508	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18975016	18975016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	34	345	3	ENST00000262803.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000262803	NM_002911.3	938	cGg/cAg																																																																														
MAX	4149	MSKCC	GRCh37	14	65543197	65543197	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	10	289	0	ENST00000358664.4:c.480C>G	p.Ser160Arg	p.S160R	ENST00000358664	NM_002382.4	160	agC/agG																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0037919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	22	242	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578194	7578195	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC			P-0037919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	58	780	0	ENST00000269305.4:c.652_654dup	p.Val218dup	p.V218dup	ENST00000269305	NM_001126112.2	218	-/GTG																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267351	41267351	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0037919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	19	193	0	ENST00000349496.5:c.935A>T	p.Lys312Met	p.K312M	ENST00000349496	NM_001904.3	312	aAg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	201	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	213	648	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012389	29012389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	154	481	2	ENST00000282397.4:c.482C>T	p.Thr161Met	p.T161M	ENST00000282397	NM_002019.4	161	aCg/aTg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473732	67473732	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	420	695	0	ENST00000327367.4:c.812T>C	p.Leu271Pro	p.L271P	ENST00000327367	NM_005902.3	271	cTa/cCa																																																																														
RFWD2	0	MSKCC	GRCh37	1	176104188	176104188	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	51	290	0	ENST00000367669.3:c.926A>T	p.Asp309Val	p.D309V	ENST00000367669	NM_022457.5	309	gAt/gTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245379	46245425	+	frameshift_variant	Frame_Shift_Del	DEL	ATAGCCCAGCAACCATTTTCCAAGGGACTTCTGGCAACCAGGTAACC	ATAGCCCAGCAACCATTTTCCAAGGGACTTCTGGCAACCAGGTAACC	-			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	96	427	0	ENST00000334344.6:c.3476_3522del	p.Ser1159AsnfsTer66	p.S1159Nfs*66	ENST00000334344	NM_152641.2	1158	aATAGCCCAGCAACCATTTTCCAAGGGACTTCTGGCAACCAGGTAACC/a																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245427	46245427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	99	424	0	ENST00000334344.6:c.3521T>C	p.Ile1174Thr	p.I1174T	ENST00000334344	NM_152641.2	1174	aTa/aCa																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872564	35872592	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTCTACGAATGCAAGAGAGACCAGAGAA	AGTCTACGAATGCAAGAGAGACCAGAGAA	-			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	57	400	0	ENST00000216797.5:c.337-26_339del		p.X113_splice	ENST00000216797	NM_020529.2	113																																																																															
PREX2	80243	MSKCC	GRCh37	8	69021716	69021716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	163	505	0	ENST00000288368.4:c.3004T>C	p.Ser1002Pro	p.S1002P	ENST00000288368	NM_024870.2	1002	Tct/Cct																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542603	141542603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	447	671	6	ENST00000220592.5:c.2383C>T	p.Arg795Cys	p.R795C	ENST00000220592	NM_012154.3	795	Cgc/Tgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139411796	139411796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	249	1019	3	ENST00000277541.6:c.1483G>A	p.Ala495Thr	p.A495T	ENST00000277541	NM_017617.3	495	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0037923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	76	371	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
AURKA	6790	MSKCC	GRCh37	20	54959348	54959348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	48	309	0	ENST00000312783.6:c.352C>T	p.Gln118Ter	p.Q118*	ENST00000312783	NM_198436.1	118	Cag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028094	69028094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	150	591	2	ENST00000288368.4:c.3253G>A	p.Val1085Ile	p.V1085I	ENST00000288368	NM_024870.2	1085	Gta/Ata																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971300	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCC	CCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCC	-			P-0037923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	54	552	0	ENST00000304494.5:c.151-93_332del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971300	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCC	CCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCC	-			P-0037923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	54	552	0	ENST00000304494.5:c.151-93_332del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971300	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCC	CCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCC	-			P-0037923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	54	552	0	ENST00000304494.5:c.151-93_332del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	316	482	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143985	11143985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	416	654	1	ENST00000344626.4:c.3566G>A	p.Arg1189Gln	p.R1189Q	ENST00000344626	NM_003072.3	1189	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630251	187630251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	160	656	0	ENST00000441802.2:c.731C>T	p.Thr244Met	p.T244M	ENST00000441802	NM_005245.3	244	aCg/aTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120267	70120267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	497	783	1	ENST00000245479.2:c.1269C>A	p.Phe423Leu	p.F423L	ENST00000245479	NM_000346.3	423	ttC/ttA																																																																														
CALR	811	MSKCC	GRCh37	19	13051415	13051415	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	42	593	0	ENST00000316448.5:c.763G>T	p.Glu255Ter	p.E255*	ENST00000316448	NM_004343.3	255	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	123	896	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	62	502	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	22	222	0	ENST00000304494.5:c.281T>C	p.Leu94Pro	p.L94P	ENST00000304494	NM_000077.4	94	cTg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	22	222	0	ENST00000304494.5:c.281T>C	p.Leu94Pro	p.L94P	ENST00000304494	NM_000077.4	94	cTg/cCg																																																																														
SRC	6714	MSKCC	GRCh37	20	36031215	36031215	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	132	940	1	ENST00000358208.4:c.1334A>G	p.Lys445Arg	p.K445R	ENST00000358208		445	aAg/aGg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713825	30713825	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	110	792	1	ENST00000359013.4:c.1225A>T	p.Asn409Tyr	p.N409Y	ENST00000359013	NM_001024847.2	409	Aat/Tat																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004570	150004573	+	frameshift_variant	Frame_Shift_Del	DEL	TAGT	TAGT	-			P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	110	784	0	ENST00000253339.5:c.1652_1655del	p.Asn551IlefsTer96	p.N551Ifs*96	ENST00000253339		551	aACTAt/at																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739873	41739873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	66	544	0	ENST00000242208.4:c.100G>A	p.Asp34Asn	p.D34N	ENST00000242208	NM_002192.2	34	Gac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	10	327	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																														
AKT2	208	MSKCC	GRCh37	19	40743959	40743959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	116	662	0	ENST00000392038.2:c.748G>A	p.Glu250Lys	p.E250K	ENST00000392038	NM_001626.4	250	Gag/Aag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111475	8111482	+	frameshift_variant	Frame_Shift_Del	DEL	CAGACCAC	CAGACCAC	-			P-0038672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	78	581	0	ENST00000346208.3:c.963_970del	p.Gln321HisfsTer28	p.Q321Hfs*28	ENST00000346208		321	CAGACCACc/c																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658809	3658818	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTAAAGTC	CTTTAAAGTC	-			P-0038672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	114	661	0	ENST00000294008.3:c.148_157del	p.Asp50AsnfsTer10	p.D50Nfs*10	ENST00000294008	NM_032444.2	50	GACTTTAAAGaa/aa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622553	158622553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	40	465	0	ENST00000263640.3:c.946C>A	p.Leu316Ile	p.L316I	ENST00000263640	NM_001105.4	316	Ctt/Att																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	107	452	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266501	198266501	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	10	232	0	ENST00000335508.6:c.2335T>C	p.Ser779Pro	p.S779P	ENST00000335508	NM_012433.2	779	Tct/Cct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	75	344	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	59	453	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	138	710	0	ENST00000344626.4:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000344626	NM_003072.3	882	Gaa/Aaa																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	102	582	0	ENST00000330062.3:c.514A>G	p.Arg172Gly	p.R172G	ENST00000330062	NM_002168.2	172	Agg/Ggg																																																																														
APC	324	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	95	232	0	ENST00000257430.4:c.4497delA	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509873	106509873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	90	577	0	ENST00000359195.3:c.1867G>A	p.Asp623Asn	p.D623N	ENST00000359195	NM_002649.2	623	Gat/Aat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134269	11134269	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	111	620	0	ENST00000344626.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000344626	NM_003072.3	979	Cga/Tga																																																																														
TET1	80312	MSKCC	GRCh37	10	70404650	70404650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	52	515	0	ENST00000373644.4:c.2164G>A	p.Val722Met	p.V722M	ENST00000373644	NM_030625.2	722	Gtg/Atg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701191	43701191	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	129	599	0	ENST00000382044.4:c.5504G>C	p.Trp1835Ser	p.W1835S	ENST00000382044	NM_001141980.1	1835	tGg/tCg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412014	63412014	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	101	651	0	ENST00000330258.3:c.1153G>T	p.Glu385Ter	p.E385*	ENST00000330258	NM_152424.3	385	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	423	713	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2090230	2090230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	366	747	2	ENST00000219066.1:c.719C>T	p.Thr240Met	p.T240M	ENST00000219066	NM_002528.5	240	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	387	547	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427582	72427582	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	113	301	0	ENST00000477973.2:c.906C>G	p.Ser303Cys	p.S303C	ENST00000477973	NM_012234.5	303	tCc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	61	358	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	79	402	2	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	33	309	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	140	915	3	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	129	555	2	ENST00000269305.4:c.993G>C	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caC																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539003	187539003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	115	488	1	ENST00000441802.2:c.8737G>T	p.Asp2913Tyr	p.D2913Y	ENST00000441802	NM_005245.3	2913	Gat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112173868	112173870	+	frameshift_variant	Frame_Shift_Del	DEL	TCT	TCT	G			P-0039437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	59	334	0	ENST00000257430.4:c.2577_2579delinsG	p.Leu860ArgfsTer51	p.L860Rfs*51	ENST00000257430	NM_000038.5	859	ggTCTa/ggGa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	164	553	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	123	507	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1327776	1327776	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	86	528	0	ENST00000381566.1:c.105C>G	p.Ile35Met	p.I35M	ENST00000381566		35	atC/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	533	794	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922694	44922694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	96	306	0	ENST00000377967.4:c.1555C>T	p.Arg519Ter	p.R519*	ENST00000377967	NM_021140.2	519	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108160464	108160464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	140	479	0	ENST00000278616.4:c.4372G>A	p.Gly1458Arg	p.G1458R	ENST00000278616	NM_000051.3	1458	Gga/Aga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411602	63411602	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	394	882	0	ENST00000330258.3:c.1565A>T	p.Asp522Val	p.D522V	ENST00000330258	NM_152424.3	522	gAt/gTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	226	647	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	63	245	0				ENST00000310581	NM_198253.2																																																																																
STAT3	6774	MSKCC	GRCh37	17	40474463	40474463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	160	662	0	ENST00000264657.5:c.1938C>A	p.Asn646Lys	p.N646K	ENST00000264657	NM_139276.2	646	aaC/aaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	68	567	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577564	7577564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	360	529	1	ENST00000269305.4:c.717C>A	p.Asn239Lys	p.N239K	ENST00000269305	NM_001126112.2	239	aaC/aaA																																																																														
RET	5979	MSKCC	GRCh37	10	43604643	43604661	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTCCGTGAGCAGGAGGG	CTCTCCGTGAGCAGGAGGG	-			P-0039726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	136	592	0	ENST00000355710.3:c.1231_1249del	p.Ser411AlafsTer36	p.S411Afs*36	ENST00000355710	NM_020975.4	410	CTCTCCGTGAGCAGGAGGGct/ct																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266873	18266873	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	225	327	1	ENST00000222254.8:c.184G>T	p.Glu62Ter	p.E62*	ENST00000222254	NM_005027.3	62	Gag/Tag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131927000	131927000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	104	289	0	ENST00000265335.6:c.1537G>C	p.Asp513His	p.D513H	ENST00000265335		513	Gac/Cac																																																																														
BTK	695	MSKCC	GRCh37	X	100608866	100608866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	120	547	0	ENST00000308731.7:c.1742G>T	p.Trp581Leu	p.W581L	ENST00000308731	NM_000061.2	581	tGg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	47	250	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	70	186	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748595	40748595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	122	446	0	ENST00000373198.4:c.2921G>A	p.Arg974Gln	p.R974Q	ENST00000373198	NM_133170.3	974	cGg/cAg																																																																														
ATM	472	MSKCC	GRCh37	11	108205709	108205709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	65	185	0	ENST00000278616.4:c.8024G>A	p.Gly2675Glu	p.G2675E	ENST00000278616	NM_000051.3	2675	gGa/gAa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878922	117878922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	134	317	0	ENST00000297338.2:c.47A>T	p.Lys16Ile	p.K16I	ENST00000297338	NM_006265.2	16	aAa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	268	670	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	232	587	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	128	272	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81891943	81891943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	104	559	0	ENST00000359376.3:c.413C>T	p.Thr138Met	p.T138M	ENST00000359376	NM_002661.3	138	aCg/aTg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62305417	62305417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	121	709	0	ENST00000508582.2:c.962C>T	p.Pro321Leu	p.P321L	ENST00000508582		321	cCg/cTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715683	18715683	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	48	267	0	ENST00000266497.5:c.3514T>G	p.Leu1172Val	p.L1172V	ENST00000266497		1172	Ttg/Gtg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539768	187539768	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	93	431	0	ENST00000441802.2:c.7972A>G	p.Lys2658Glu	p.K2658E	ENST00000441802	NM_005245.3	2658	Aag/Gag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31410888	31410888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	122	716	0	ENST00000344624.3:c.3632C>T	p.Ala1211Val	p.A1211V	ENST00000344624		1211	gCg/gTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058444	69058444	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0039752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	53	245	0	ENST00000288368.4:c.4088A>T	p.Asn1363Ile	p.N1363I	ENST00000288368	NM_024870.2	1363	aAt/aTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	390	504	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699360	47699360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	164	396	0	ENST00000347630.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000347630	NM_001007230.1	50	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	183	454	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142216018	142216018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	111	315	0	ENST00000350721.4:c.5575G>C	p.Glu1859Gln	p.E1859Q	ENST00000350721	NM_001184.3	1859	Gag/Cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023264	27023267	+	frameshift_variant	Frame_Shift_Del	DEL	GGCG	GGCG	-			P-0039774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	117	147	0	ENST00000324856.7:c.371_374del	p.Gly124ValfsTer107	p.G124Vfs*107	ENST00000324856	NM_006015.4	124	GGCGgt/gt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426581	49426581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	188	809	0	ENST00000301067.7:c.11907G>T	p.Gln3969His	p.Q3969H	ENST00000301067	NM_003482.3	3969	caG/caT																																																																														
FLT1	2321	MSKCC	GRCh37	13	28959099	28959099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	136	360	0	ENST00000282397.4:c.2039T>C	p.Leu680Ser	p.L680S	ENST00000282397	NM_002019.4	680	tTa/tCa																																																																														
SDHA	6389	MSKCC	GRCh37	5	251546	251554	+	inframe_deletion	In_Frame_Del	DEL	AGGAGTCAC	AGGAGTCAC	-			P-0039774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	167	558	0	ENST00000264932.6:c.1757_1765del	p.Lys586_Ser588del	p.K586_S588del	ENST00000264932	NM_004168.2	586	aAGGAGTCACgg/agg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502286	157502286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	150	547	0	ENST00000346085.5:c.3319G>A	p.Val1107Ile	p.V1107I	ENST00000346085	NM_020732.3	1107	Gtc/Atc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268968	55268968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	229	753	0	ENST00000275493.2:c.3034G>A	p.Asp1012Asn	p.D1012N	ENST00000275493	NM_005228.3	1012	Gat/Aat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152007151	152007153	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0039774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	204	378	0	ENST00000262189.6:c.747_749del	p.Cys249del	p.C249del	ENST00000262189	NM_170606.2	249	tgTTGg/tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	109	343	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230597	46230597	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	65	380	0	ENST00000334344.6:c.846A>C	p.Glu282Asp	p.E282D	ENST00000334344	NM_152641.2	282	gaA/gaC																																																																														
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	87	746	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602326	10602326	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	99	774	0	ENST00000171111.5:c.1252del	p.Val418TrpfsTer40	p.V418Wfs*40	ENST00000171111	NM_203500.1	418	Gtg/tg																																																																														
BARD1	580	MSKCC	GRCh37	2	215674221	215674221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	87	706	1	ENST00000260947.4:c.73G>T	p.Ala25Ser	p.A25S	ENST00000260947	NM_000465.2	25	Gcc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066687	94066687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	57	396	1	ENST00000369303.4:c.1072G>T	p.Gly358Trp	p.G358W	ENST00000369303	NM_004440.3	358	Ggg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954983	2954983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	88	569	0	ENST00000396946.4:c.2727G>T	p.Lys909Asn	p.K909N	ENST00000396946	NM_032415.4	909	aaG/aaT																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540370	23540370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	65	504	0	ENST00000380871.4:c.33G>T	p.Glu11Asp	p.E11D	ENST00000380871	NM_006167.3	11	gaG/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	335	770	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426451	47426491	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGGAGGAAGTCCCCACATTCCAAGTCACCAGCAGAGCAG	CGGGGAGGAAGTCCCCACATTCCAAGTCACCAGCAGAGCAG	-			P-0039816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	32	900	0	ENST00000377045.4:c.796_836del	p.Gly266ArgfsTer8	p.G266Rfs*8	ENST00000377045	NM_001654.4	265	tCGGGGAGGAAGTCCCCACATTCCAAGTCACCAGCAGAGCAG/t																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	123	427	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	149	1033	1	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	133	1206	1	ENST00000269305.4:c.405C>A	p.Cys135Ter	p.C135*	ENST00000269305	NM_001126112.2	135	tgC/tgA																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856019	111856019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	103	424	0	ENST00000341259.2:c.70C>T	p.Arg24Trp	p.R24W	ENST00000341259	NM_005475.2	24	Cgg/Tgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70451272	70451272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	78	852	1	ENST00000373644.4:c.6112C>T	p.Arg2038Cys	p.R2038C	ENST00000373644	NM_030625.2	2038	Cgt/Tgt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959109	2959109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1424	91	1024	0	ENST00000396946.4:c.2407G>A	p.Val803Ile	p.V803I	ENST00000396946	NM_032415.4	803	Gtc/Atc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2977594	2977594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1491	116	1019	0	ENST00000396946.4:c.1090C>T	p.Arg364Cys	p.R364C	ENST00000396946	NM_032415.4	364	Cgc/Tgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25468148	25468148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	141	1022	2	ENST00000264709.3:c.1528G>A	p.Val510Ile	p.V510I	ENST00000264709	NM_175629.2	510	Gtt/Att																																																																														
HGF	3082	MSKCC	GRCh37	7	81336606	81336606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	46	344	0	ENST00000222390.5:c.1616G>A	p.Arg539Gln	p.R539Q	ENST00000222390	NM_000601.4	539	cGa/cAa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119791	70119791	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	233	913	0	ENST00000245479.2:c.793C>T	p.Gln265Ter	p.Q265*	ENST00000245479	NM_000346.3	265	Cag/Tag																																																																														
NUF2	83540	MSKCC	GRCh37	1	163315580	163315580	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	30	407	0	ENST00000271452.3:c.920G>C	p.Arg307Thr	p.R307T	ENST00000271452	NM_145697.2	307	aGg/aCg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198260798	198260798	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	107	543	0	ENST00000335508.6:c.3521A>G	p.Glu1174Gly	p.E1174G	ENST00000335508	NM_012433.2	1174	gAa/gGa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109322571	109322571	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	108	765	0	ENST00000436639.2:c.466A>T	p.Ser156Cys	p.S156C	ENST00000436639	NM_014454.2	156	Agt/Tgt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372064	55372064	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	85	377	0	ENST00000297316.4:c.754A>G	p.Ser252Gly	p.S252G	ENST00000297316	NM_022454.3	252	Agc/Ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	129	785	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564447	86564447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	101	710	0	ENST00000274376.6:c.179C>T	p.Thr60Ile	p.T60I	ENST00000274376	NM_002890.2	60	aCt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	806	863	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696435	47696435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	142	529	0	ENST00000347630.2:c.388G>C	p.Asp130His	p.D130H	ENST00000347630	NM_001007230.1	130	Gac/Cac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882362	89882362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	387	585	0	ENST00000389301.3:c.112G>A	p.Glu38Lys	p.E38K	ENST00000389301	NM_000135.2	38	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023903	27023904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	91	91	0	ENST00000324856.7:c.1015dup	p.Ala339GlyfsTer61	p.A339Gfs*61	ENST00000324856	NM_006015.4	337	tgg/tGgg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039906	47039906	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	512	343	0	ENST00000329236.7:c.1014+1G>T		p.X338_splice	ENST00000329236	NM_001204466.1	338																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245376	46245376	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	286	425	0	ENST00000334344.6:c.3470C>G	p.Ser1157Ter	p.S1157*	ENST00000334344	NM_152641.2	1157	tCa/tGa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950465	38950465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	107	392	0	ENST00000357387.3:c.3485C>T	p.Ser1162Leu	p.S1162L	ENST00000357387	NM_152756.3	1162	tCa/tTa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43720290	43720290	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	148	569	0	ENST00000382044.4:c.3752T>C	p.Val1251Ala	p.V1251A	ENST00000382044	NM_001141980.1	1251	gTa/gCa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605131	46605131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	168	710	0	ENST00000263734.3:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000263734	NM_001430.4	450	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258542	16258542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	451	627	0	ENST00000375759.3:c.5807G>A	p.Arg1936Gln	p.R1936Q	ENST00000375759	NM_015001.2	1936	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087894	27087906	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACCCAGTGGC	GCCACCCAGTGGC	-			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	518	613	0	ENST00000324856.7:c.2181_2193del	p.Pro728SerfsTer10	p.P728Sfs*10	ENST00000324856	NM_006015.4	727	cgGCCACCCAGTGGC/cg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105574	27105575	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	359	572	1	ENST00000324856.7:c.5185_5186delinsCT	p.Gly1729Leu	p.G1729L	ENST00000324856	NM_006015.4	1729	GGc/CTc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163306609	163306609	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1335	87	387	0	ENST00000271452.3:c.406G>T	p.Glu136Ter	p.E136*	ENST00000271452	NM_145697.2	136	Gaa/Taa																																																																														
RET	5979	MSKCC	GRCh37	10	43620369	43620369	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	299	600	0	ENST00000355710.3:c.2978A>T	p.Asp993Val	p.D993V	ENST00000355710	NM_020975.4	993	gAc/gTc																																																																														
YAP1	10413	MSKCC	GRCh37	11	102098228	102098228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	320	461	0	ENST00000282441.5:c.1192A>G	p.Thr398Ala	p.T398A	ENST00000282441	NM_001130145.2	398	Aca/Gca																																																																														
RB1	5925	MSKCC	GRCh37	13	49027165	49027172	+	frameshift_variant	Frame_Shift_Del	DEL	GACCGAGA	GACCGAGA	-			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	111	426	0	ENST00000267163.4:c.1732_1739del	p.Asp578ArgfsTer4	p.D578Rfs*4	ENST00000267163	NM_000321.2	578	GACCGAGAa/a																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68758636	68758636	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	231	402	0	ENST00000487270.1:c.792T>G	p.Ser264Arg	p.S264R	ENST00000487270	NM_133509.3	264	agT/agG																																																																														
MGA	23269	MSKCC	GRCh37	15	41989217	41989217	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	298	473	1	ENST00000219905.7:c.2009C>G	p.Ser670Ter	p.S670*	ENST00000219905	NM_001164273.1	670	tCa/tGa																																																																														
BLM	641	MSKCC	GRCh37	15	91292878	91292891	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTAAAGAAATCC	CTGTAAAGAAATCC	-			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	376	529	0	ENST00000355112.3:c.381_394del	p.Val128GlyfsTer10	p.V128Gfs*10	ENST00000355112	NM_000057.2	127	aCTGTAAAGAAATCC/a																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622067	1622067	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	287	831	0	ENST00000344749.5:c.808C>G	p.Gln270Glu	p.Q270E	ENST00000344749	NM_001136139.2	270	Cag/Gag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10257172	10257172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	432	524	0	ENST00000340748.4:c.2701G>A	p.Glu901Lys	p.E901K	ENST00000340748		901	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11095006	11095006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	312	794	0	ENST00000344626.4:c.179G>T	p.Gly60Val	p.G60V	ENST00000344626	NM_003072.3	60	gGg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096076	11096076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	101	731	0	ENST00000344626.4:c.350C>G	p.Ser117Cys	p.S117C	ENST00000344626	NM_003072.3	117	tCc/tGc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262317	46262317	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	254	498	0	ENST00000371998.3:c.901A>C	p.Ile301Leu	p.I301L	ENST00000371998		301	Att/Ctt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278168	41278168	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	185	432	0	ENST00000349496.5:c.2044C>G	p.Leu682Val	p.L682V	ENST00000349496	NM_001904.3	682	Ctc/Gtc																																																																														
MITF	4286	MSKCC	GRCh37	3	69788796	69788796	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	189	395	0	ENST00000352241.4:c.48G>C	p.Glu16Asp	p.E16D	ENST00000352241	NM_198159.2	16	gaG/gaC																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72866475	72866476	+	missense_variant	Missense_Mutation	DNP	AG	AG	CC			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	149	385	0	ENST00000325599.8:c.787_788delinsGG	p.Leu263Gly	p.L263G	ENST00000325599	NM_018130.2	263	CTg/GGg																																																																														
ATR	545	MSKCC	GRCh37	3	142178150	142178150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	66	348	0	ENST00000350721.4:c.7268T>C	p.Val2423Ala	p.V2423A	ENST00000350721	NM_001184.3	2423	gTa/gCa																																																																														
KDR	3791	MSKCC	GRCh37	4	55961823	55961823	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	186	374	0	ENST00000263923.4:c.2738T>C	p.Met913Thr	p.M913T	ENST00000263923	NM_002253.2	913	aTg/aCg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271193	153271193	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	65	238	0	ENST00000281708.4:c.584+1G>T		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																															
MSH3	4437	MSKCC	GRCh37	5	80169025	80169025	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	308	645	0	ENST00000265081.6:c.3221A>G	p.Lys1074Arg	p.K1074R	ENST00000265081	NM_002439.4	1074	aAa/aGa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721879	176721879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	347	567	1	ENST00000439151.2:c.7510G>A	p.Val2504Ile	p.V2504I	ENST00000439151	NM_022455.4	2504	Gtt/Att																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93953195	93953195	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	207	391	0	ENST00000369303.4:c.2946G>C	p.Gln982His	p.Q982H	ENST00000369303	NM_004440.3	982	caG/caC																																																																														
SMO	6608	MSKCC	GRCh37	7	128845083	128845083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	545	839	0	ENST00000249373.3:c.577T>C	p.Cys193Arg	p.C193R	ENST00000249373	NM_005631.4	193	Tgc/Cgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453192	140453192	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	138	275	0	ENST00000288602.6:c.1743T>G	p.Asn581Lys	p.N581K	ENST00000288602	NM_004333.4	581	aaT/aaG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151960110	151960111	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	164	435	0	ENST00000262189.6:c.1289_1290delinsTT	p.Trp430Phe	p.W430F	ENST00000262189	NM_170606.2	430	tGG/tTT																																																																														
AR	367	MSKCC	GRCh37	X	66765235	66765235	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	30	245	0	ENST00000374690.3:c.247A>G	p.Ser83Gly	p.S83G	ENST00000374690	NM_000044.3	83	Agc/Ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	319	710	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29483087	29483087	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	74	474	0	ENST00000358273.4:c.147C>G	p.Tyr49Ter	p.Y49*	ENST00000358273	NM_001042492.2	49	taC/taG																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363363	40363363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	37	727	1	ENST00000397332.2:c.866C>G	p.Pro289Arg	p.P289R	ENST00000397332	NM_001033082.2	289	cCt/cGt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852194	63852212	+	frameshift_variant	Frame_Shift_Del	DEL	GCATGGTCCACCCAATCCT	GCATGGTCCACCCAATCCT	-			P-0040043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	28	537	0	ENST00000279873.7:c.2975_2993del	p.Met992ThrfsTer4	p.M992Tfs*4	ENST00000279873	NM_032199.2	991	gGCATGGTCCACCCAATCCTg/gg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246198	41246198	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	85	459	0	ENST00000357654.3:c.1350del	p.Lys450AsnfsTer3	p.K450Nfs*3	ENST00000357654	NM_007294.3	450	aaA/aa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164946	47164946	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	10	247	0	ENST00000409792.3:c.1180T>C	p.Cys394Arg	p.C394R	ENST00000409792	NM_014159.6	394	Tgt/Cgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	141	351	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	230	464	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	45	227	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	87	227	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087961	27087961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	223	398	0	ENST00000324856.7:c.2248C>T	p.Arg750Ter	p.R750*	ENST00000324856	NM_006015.4	750	Cga/Tga																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001303	29001303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201407326		P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	112	237	0	ENST00000282397.4:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000282397	NM_002019.4	477	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653807	89653807	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	226	308	0	ENST00000371953.3:c.107del	p.Gly36AspfsTer18	p.G36Dfs*18	ENST00000371953	NM_000314.4	35	atG/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088681	27088682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	316	704	0	ENST00000324856.7:c.2296dup	p.Gln766ProfsTer51	p.Q766Pfs*51	ENST00000324856	NM_006015.4	764	tcc/tCcc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593301	67593301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	118	235	0	ENST00000274335.5:c.2047G>A	p.Glu683Lys	p.E683K	ENST00000274335		683	Gag/Aag																																																																														
AKT3	10000	MSKCC	GRCh37	1	243828098	243828098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	161	288	0	ENST00000263826.5:c.260T>A	p.Phe87Tyr	p.F87Y	ENST00000263826	NM_005465.4	87	tTt/tAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442940	49442940	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201530748		P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	87	548	0	ENST00000301067.7:c.3968G>A	p.Gly1323Asp	p.G1323D	ENST00000301067	NM_003482.3	1323	gGt/gAt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384664	31384664	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	76	553	0	ENST00000328111.2:c.1366C>T	p.Gln456Ter	p.Q456*	ENST00000328111	NM_006892.3	456	Cag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356258	66356258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	100	438	0	ENST00000273854.3:c.1239G>T	p.Arg413Ser	p.R413S	ENST00000273854	NM_004439.5	413	agG/agT																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020749	26020749	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	87	188	0	ENST00000357647.3:c.32C>G	p.Ser11Cys	p.S11C	ENST00000357647	NM_003529.2	11	tCt/tGt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591151	67591154	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ATGT	ATGT	C			P-0040058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	124	266	0	ENST00000274335.5:c.1744_1745+2delinsC		p.X582_splice	ENST00000274335		582																																																																															
BRCA2	675	MSKCC	GRCh37	13	32907467	32907467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	153	202	0	ENST00000380152.3:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000380152		618	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0040061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	492	781	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	93	237	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0040061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	18	178	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	195	362	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603041	48603041	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	79	283	0	ENST00000342988.3:c.1342C>T	p.Gln448Ter	p.Q448*	ENST00000342988	NM_005359.5	448	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	374	690	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	124	273	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	399	715	0	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163325224	163325224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	42	287	1	ENST00000271452.3:c.1360G>A	p.Glu454Lys	p.E454K	ENST00000271452	NM_145697.2	454	Gaa/Aaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66218770	66218770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	96	240	0	ENST00000273854.3:c.2288C>G	p.Thr763Arg	p.T763R	ENST00000273854	NM_004439.5	763	aCa/aGa																																																																														
APC	324	MSKCC	GRCh37	5	112173364	112173365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	109	271	0	ENST00000257430.4:c.2075dup	p.Lys693Ter	p.K693*	ENST00000257430	NM_000038.5	691	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112178345	112178345	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	196	366	0	ENST00000257430.4:c.7054A>T	p.Ser2352Cys	p.S2352C	ENST00000257430	NM_000038.5	2352	Agt/Tgt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967221	93967221	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	122	338	0	ENST00000369303.4:c.2131A>C	p.Ile711Leu	p.I711L	ENST00000369303	NM_004440.3	711	Ata/Cta																																																																														
RET	5979	MSKCC	GRCh37	10	43595967	43595967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	121	686	0	ENST00000355710.3:c.134C>T	p.Ala45Val	p.A45V	ENST00000355710	NM_020975.4	45	gCa/gTa																																																																														
ATM	472	MSKCC	GRCh37	11	108199949	108199949	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	118	140	0	ENST00000278616.4:c.7291A>T	p.Lys2431Ter	p.K2431*	ENST00000278616	NM_000051.3	2431	Aaa/Taa																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197348	26197348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	173	334	0	ENST00000356476.2:c.131C>T	p.Pro44Leu	p.P44L	ENST00000356476		44	cCc/cTc																																																																														
CD79B	974	MSKCC	GRCh37	17	62007746	62007748	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTG	CTG	-			P-0040084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	257	284	0	ENST00000392795.3:c.122-3_122-1del		p.X41_splice	ENST00000392795	NM_001039933.1	41																																																																															
BCL6	604	MSKCC	GRCh37	3	187447337	187447337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	292	461	0	ENST00000232014.4:c.856C>T	p.Pro286Ser	p.P286S	ENST00000232014	NM_001130845.1	286	Ccc/Tcc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922968	44922968	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	225	209	0	ENST00000377967.4:c.1829T>G	p.Leu610Arg	p.L610R	ENST00000377967	NM_021140.2	610	cTg/cGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	53	379	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	61	636	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	49	481	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	57	600	1	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123788	11123788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	29	418	0	ENST00000344626.4:c.2438C>T	p.Ser813Leu	p.S813L	ENST00000344626	NM_003072.3	813	tCa/tTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505443	157505443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	40	432	0	ENST00000346085.5:c.3428del	p.Lys1143SerfsTer68	p.K1143Sfs*68	ENST00000346085	NM_020732.3	1142	Aaa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952049	178952049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	37	306	0	ENST00000263967.3:c.3104C>T	p.Ala1035Val	p.A1035V	ENST00000263967	NM_006218.2	1035	gCt/gTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509786	187509786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142057401		P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	33	259	0	ENST00000441802.2:c.13727C>T	p.Thr4576Met	p.T4576M	ENST00000441802	NM_005245.3	4576	aCg/aTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136201	2136201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	46	491	0	ENST00000219476.3:c.4670G>A	p.Ser1557Asn	p.S1557N	ENST00000219476	NM_000548.3	1557	aGc/aAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	46	674	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922306	178922306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	31	300	0	ENST00000263967.3:c.1075G>C	p.Gly359Arg	p.G359R	ENST00000263967	NM_006218.2	359	Ggt/Cgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1255456	1255456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	77	655	4	ENST00000310581.5:c.3103G>A	p.Val1035Ile	p.V1035I	ENST00000310581	NM_198253.2	1035	Gtc/Atc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	50	582	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																														
TET1	80312	MSKCC	GRCh37	10	70412340	70412340	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	30	249	0	ENST00000373644.4:c.4450A>G	p.Ile1484Val	p.I1484V	ENST00000373644	NM_030625.2	1484	Att/Gtt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118347631	118347631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	40	433	0	ENST00000534358.1:c.3268A>G	p.Met1090Val	p.M1090V	ENST00000534358	NM_005933.3	1090	Atg/Gtg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929152	32929152	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	28	458	0	ENST00000380152.3:c.7162A>G	p.Thr2388Ala	p.T2388A	ENST00000380152		2388	Aca/Gca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830071	72830071	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	64	582	1	ENST00000268489.5:c.6510del	p.Ser2171ValfsTer5	p.S2171Vfs*5	ENST00000268489	NM_006885.3	2170	ccC/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831457	72831458	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	43	496	0	ENST00000268489.5:c.5123_5124del	p.Lys1708ArgfsTer65	p.K1708Rfs*65	ENST00000268489	NM_006885.3	1708	aAA/a																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63530121	63530121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	56	569	0	ENST00000307078.5:c.2314G>T	p.Gly772Trp	p.G772W	ENST00000307078	NM_004655.3	772	Ggg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220135	36220136	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	69	682	0	ENST00000222270.7:c.4855_4856del	p.Phe1619ArgfsTer58	p.F1619Rfs*58	ENST00000222270	NM_014727.1	1619	TTc/c																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965845	25965845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	61	550	1	ENST00000435504.4:c.3361G>A	p.Ala1121Thr	p.A1121T	ENST00000435504		1121	Gca/Aca																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274631	198274631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	51	551	1	ENST00000335508.6:c.767C>A	p.Pro256His	p.P256H	ENST00000335508	NM_012433.2	256	cCt/cAt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526210	31526210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	75	745	2	ENST00000344624.3:c.830G>A	p.Arg277His	p.R277H	ENST00000344624		277	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176683985	176683985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	53	430	0	ENST00000439151.2:c.4799G>T	p.Gly1600Val	p.G1600V	ENST00000439151	NM_022455.4	1600	gGg/gTg																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045823	26045823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	31	446	0	ENST00000540144.1:c.185T>C	p.Leu62Pro	p.L62P	ENST00000540144	NM_003531.2	62	cTg/cCg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100243	157100253	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCCGGCTC	GCCGCCGGCTC	-			P-0040122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	21	116	0	ENST00000346085.5:c.1181_1191del	p.Ala394GlyfsTer137	p.A394Gfs*137	ENST00000346085	NM_020732.3	394	GCCGCCGGCTCg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0040154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	471	442	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245948	41245948	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	491	454	1	ENST00000357654.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000357654	NM_007294.3	534	Cag/Tag																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246670488	246670488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	144	355	0	ENST00000388985.4:c.32C>T	p.Thr11Ile	p.T11I	ENST00000388985		11	aCc/aTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268793	98268793	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	222	416	0	ENST00000331920.6:c.290A>C	p.Asn97Thr	p.N97T	ENST00000331920	NM_000264.3	97	aAc/aCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	175	525	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112174580	112174580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	143	325	0	ENST00000257430.4:c.3289G>T	p.Glu1097Ter	p.E1097*	ENST00000257430	NM_000038.5	1097	Gaa/Taa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	14	340	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	139	425	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317267	87317267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	101	335	0	ENST00000277120.3:c.292A>G	p.Ile98Val	p.I98V	ENST00000277120		98	Att/Gtt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457281	67457315	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCATCTACTGCCGCCTGTGGCGATGGCCAGACC	TGTCATCTACTGCCGCCTGTGGCGATGGCCAGACC	-			P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	43	477	0	ENST00000327367.4:c.257_291del	p.Val86AlafsTer13	p.V86Afs*13	ENST00000327367	NM_005902.3	85	caTGTCATCTACTGCCGCCTGTGGCGATGGCCAGACCtg/catg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412313	63412314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	200	602	0	ENST00000330258.3:c.853dup	p.His285ProfsTer2	p.H285Pfs*2	ENST00000330258	NM_152424.3	285	cat/cCat																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	105	410	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	65	272	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	80	210	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
MAX	4149	MSKCC	GRCh37	14	65544703	65544703	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	120	559	1	ENST00000358664.4:c.223C>T	p.Arg75Ter	p.R75*	ENST00000358664	NM_002382.4	75	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	78	385	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396382	396382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200741961		P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	156	662	1	ENST00000262320.3:c.644C>T	p.Ser215Leu	p.S215L	ENST00000262320	NM_003502.3	215	tCg/tTg																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	118	456	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
NF1	4763	MSKCC	GRCh37	17	29552152	29552152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	56	256	0	ENST00000358273.4:c.1885G>A	p.Gly629Arg	p.G629R	ENST00000358273	NM_001042492.2	629	Ggg/Agg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	126	440	2	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	117	591	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154887	2154887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	135	582	2	ENST00000434045.2:c.334G>A	p.Ala112Thr	p.A112T	ENST00000434045	NM_001127598.1	112	Gca/Aca																																																																														
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	109	389	0	ENST00000558401.1:c.1A>T	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Ttg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	112	363	5	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109935	115109935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	148	601	0	ENST00000257566.3:c.1943C>T	p.Pro648Leu	p.P648L	ENST00000257566	NM_016569.3	648	cCg/cTg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523072	25523072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	88	615	0	ENST00000264709.3:c.113G>A	p.Arg38His	p.R38H	ENST00000264709	NM_175629.2	38	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1268701	1268701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	181	743	0	ENST00000310581.5:c.2516C>T	p.Thr839Met	p.T839M	ENST00000310581	NM_198253.2	839	aCg/aTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246488	46246488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	55	225	0	ENST00000334344.6:c.4582G>A	p.Ala1528Thr	p.A1528T	ENST00000334344	NM_152641.2	1528	Gca/Aca																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943789	71943789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	156	652	2	ENST00000298229.2:c.1832G>A	p.Arg611His	p.R611H	ENST00000298229	NM_001567.3	611	cGc/cAc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500450	149500450	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs112566969		P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	110	453	1	ENST00000261799.4:c.2586+1G>A		p.X862_splice	ENST00000261799	NM_002609.3	862																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589609	67589610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	58	139	0	ENST00000274335.5:c.1378dupA	p.Ser460LysfsTer5	p.S460Kfs*5	ENST00000274335		458	gaa/gAaa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864217	57864217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	107	534	0	ENST00000228682.2:c.1694T>C	p.Phe565Ser	p.F565S	ENST00000228682	NM_005269.2	565	tTc/tCc																																																																														
POLE	5426	MSKCC	GRCh37	12	133233757	133233759	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	115	413	0	ENST00000320574.5:c.3545_3547del	p.Lys1182del	p.K1182del	ENST00000320574	NM_006231.2	1182	aAGAtc/atc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15967457	15967457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	134	481	2	ENST00000268712.3:c.5146C>T	p.Arg1716Trp	p.R1716W	ENST00000268712	NM_006311.3	1716	Cgg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637540	52637540	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	37	213	0	ENST00000394830.3:c.2776del	p.Arg926GlufsTer82	p.R926Efs*82	ENST00000394830	NM_018313.4	926	Aga/ga																																																																														
WHSC1	0	MSKCC	GRCh37	4	1977024	1977024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	69	600	2	ENST00000382891.5:c.3518C>T	p.Thr1173Met	p.T1173M	ENST00000382891	NM_133335.3	1173	aCg/aTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149504391	149504391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	124	484	4	ENST00000261799.4:c.1811G>A	p.Arg604His	p.R604H	ENST00000261799	NM_002609.3	604	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097609	27097609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	106	436	0	ENST00000324856.7:c.3199-1G>T		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																																																															
SESN2	83667	MSKCC	GRCh37	1	28598251	28598251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	205	704	1	ENST00000253063.3:c.223C>T	p.Arg75Ter	p.R75*	ENST00000253063	NM_031459.4	75	Cga/Tga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841438	156841438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	130	501	0	ENST00000524377.1:c.744del	p.Leu249Ter	p.L249*	ENST00000524377	NM_002529.3	247	ctG/ct																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746056	162746056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	103	335	0	ENST00000367921.3:c.2179G>A	p.Ala727Thr	p.A727T	ENST00000367921	NM_006182.2	727	Gct/Act																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114799802	114799802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	113	430	0	ENST00000543371.1:c.469C>A	p.Pro157Thr	p.P157T	ENST00000543371	NM_001198531.1	157	Cca/Aca																																																																														
CCND1	595	MSKCC	GRCh37	11	69458649	69458649	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	102	417	0	ENST00000227507.2:c.464T>C	p.Met155Thr	p.M155T	ENST00000227507	NM_053056.2	155	aTg/aCg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498145	498145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	68	442	0	ENST00000399788.2:c.113G>A	p.Arg38His	p.R38H	ENST00000399788	NM_001042603.1	38	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431603	49431603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	145	633	1	ENST00000301067.7:c.9536C>G	p.Thr3179Arg	p.T3179R	ENST00000301067	NM_003482.3	3179	aCa/aGa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445472	49445472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	186	768	1	ENST00000301067.7:c.1994C>T	p.Pro665Leu	p.P665L	ENST00000301067	NM_003482.3	665	cCg/cTg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609330	81609330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	62	226	0	ENST00000298171.2:c.928C>T	p.Arg310Cys	p.R310C	ENST00000298171	NM_000369.2	310	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820591	3820591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	173	604	0	ENST00000262367.5:c.2860G>A	p.Ala954Thr	p.A954T	ENST00000262367	NM_004380.2	954	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900703	3900703	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	148	483	0	ENST00000262367.5:c.393del	p.Ser132AlafsTer20	p.S132Afs*20	ENST00000262367	NM_004380.2	131	ccC/cc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30133172	30133172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	103	383	0	ENST00000263025.4:c.326C>T	p.Ala109Val	p.A109V	ENST00000263025	NM_002746.2	109	gCg/gTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16089881	16089881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	70	290	0	ENST00000268712.3:c.229C>A	p.Pro77Thr	p.P77T	ENST00000268712	NM_006311.3	77	Cca/Aca																																																																														
INSR	3643	MSKCC	GRCh37	19	7170554	7170554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	36	402	0	ENST00000302850.5:c.1477G>A	p.Ala493Thr	p.A493T	ENST00000302850	NM_000208.2	493	Gca/Aca																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602256	10602256	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	139	525	0	ENST00000171111.5:c.1322A>T	p.Glu441Val	p.E441V	ENST00000171111	NM_203500.1	441	gAg/gTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212482	36212482	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	133	681	0	ENST00000222270.7:c.2233C>T	p.Gln745Ter	p.Q745*	ENST00000222270	NM_014727.1	745	Caa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223199	36223199	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	186	848	0	ENST00000222270.7:c.5749A>C	p.Ser1917Arg	p.S1917R	ENST00000222270	NM_014727.1	1917	Agc/Cgc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702166	47702167	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	83	281	0	ENST00000233146.2:c.1763_1764del	p.Tyr588CysfsTer9	p.Y588Cfs*9	ENST00000233146	NM_000251.2	588	TAt/t																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99163081	99163081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	71	432	0	ENST00000074304.5:c.1087C>A	p.Pro363Thr	p.P363T	ENST00000074304	NM_001134224.1	363	Cca/Aca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713406	40713406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	140	590	2	ENST00000373198.4:c.4109G>A	p.Arg1370His	p.R1370H	ENST00000373198	NM_133170.3	1370	cGc/cAc																																																																														
MST1	4485	MSKCC	GRCh37	3	49725012	49725012	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145575614		P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	114	522	0	ENST00000449682.2:c.332G>A	p.Arg111His	p.R111H	ENST00000449682	NM_020998.3	111	cGc/cAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467679	66467679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	60	336	0	ENST00000273854.3:c.590C>T	p.Thr197Ile	p.T197I	ENST00000273854	NM_004439.5	197	aCa/aTa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56183252	56183252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	114	455	0	ENST00000399503.3:c.4162G>T	p.Asp1388Tyr	p.D1388Y	ENST00000399503	NM_005921.1	1388	Gat/Tat																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564656	86564656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	141	607	0	ENST00000274376.6:c.388C>T	p.Pro130Ser	p.P130S	ENST00000274376	NM_002890.2	130	Cca/Tca																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94067982	94067982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	38	250	0	ENST00000369303.4:c.980C>T	p.Ala327Val	p.A327V	ENST00000369303	NM_004440.3	327	gCg/gTg																																																																														
XIAP	331	MSKCC	GRCh37	X	123020315	123020315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	124	483	0	ENST00000355640.3:c.803G>A	p.Arg268Gln	p.R268Q	ENST00000355640		268	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	22	317	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399386	139399386	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201360886		P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	59	913	1	ENST00000277541.6:c.4757G>A	p.Arg1586His	p.R1586H	ENST00000277541	NM_017617.3	1586	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106078	27106078	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	44	582	0	ENST00000324856.7:c.5693delC	p.Pro1898HisfsTer25	p.P1898Hfs*25	ENST00000324856	NM_006015.4	1897	Ccc/cc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	75	835	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	31	340	0	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532710	187532710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1010116749		P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	39	482	0	ENST00000441802.2:c.9683del	p.Pro3228LeufsTer42	p.P3228Lfs*42	ENST00000441802	NM_005245.3	3228	cCt/ct																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354152	15354152	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	47	726	2	ENST00000263377.2:c.2728delC	p.Gln910LysfsTer39	p.Q910Kfs*39	ENST00000263377	NM_058243.2	910	Caa/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088681	27088682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	56	828	1	ENST00000324856.7:c.2296dup	p.Gln766ProfsTer51	p.Q766Pfs*51	ENST00000324856	NM_006015.4	764	tcc/tCcc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44514777	44514777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	36	494	0	ENST00000291552.4:c.470A>G	p.Gln157Arg	p.Q157R	ENST00000291552	NM_006758.2	157	cAg/cGg																																																																														
CDH1	999	MSKCC	GRCh37	16	68847252	68847252	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141864044		P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	48	538	1	ENST00000261769.5:c.1174G>A	p.Val392Ile	p.V392I	ENST00000261769	NM_004360.3	392	Gta/Ata																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72897475	72897475	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	27	480	0	ENST00000325599.8:c.17T>G	p.Phe6Cys	p.F6C	ENST00000325599	NM_018130.2	6	tTc/tGc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955875	55955875	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	29	351	0	ENST00000263923.4:c.3287G>A	p.Trp1096Ter	p.W1096*	ENST00000263923	NM_002253.2	1096	tGg/tAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656263	18656263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	29	486	0	ENST00000266497.5:c.2942G>A	p.Arg981His	p.R981H	ENST00000266497		981	cGc/cAc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061720	38061720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	30	357	2	ENST00000250448.2:c.269C>T	p.Ala90Val	p.A90V	ENST00000250448	NM_004496.3	90	gCg/gTg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716251	52716251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	52	845	0	ENST00000322088.6:c.695C>A	p.Ala232Asp	p.A232D	ENST00000322088	NM_014225.5	232	gCc/gAc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662683	227662683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	60	740	3	ENST00000305123.5:c.772C>T	p.Arg258Trp	p.R258W	ENST00000305123	NM_005544.2	258	Cgg/Tgg																																																																														
SRC	6714	MSKCC	GRCh37	20	36022603	36022603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	64	807	0	ENST00000358208.4:c.476G>A	p.Arg159Gln	p.R159Q	ENST00000358208		159	cGg/cAg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141583024	141583024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200483361		P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	51	717	1	ENST00000220592.5:c.223G>A	p.Val75Met	p.V75M	ENST00000220592	NM_012154.3	75	Gtg/Atg																																																																														
AR	367	MSKCC	GRCh37	X	66765409	66765409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	45	847	0	ENST00000374690.3:c.421G>A	p.Ala141Thr	p.A141T	ENST00000374690	NM_000044.3	141	Gcc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432126	49432126	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	75	753	0	ENST00000301067.7:c.9013G>C	p.Asp3005His	p.D3005H	ENST00000301067	NM_003482.3	3005	Gat/Cat																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435432	121435432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	108	839	0	ENST00000257555.6:c.1465T>C	p.Phe489Leu	p.F489L	ENST00000257555		489	Ttc/Ctc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	198	713	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858359	59858359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	63	391	0	ENST00000259008.2:c.1636G>A	p.Asp546Asn	p.D546N	ENST00000259008	NM_032043.2	546	Gat/Aat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214390	36214390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	220	727	0	ENST00000222270.7:c.3044G>A	p.Arg1015Gln	p.R1015Q	ENST00000222270	NM_014727.1	1015	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010560	48010560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	96	595	0	ENST00000234420.5:c.188C>T	p.Ser63Phe	p.S63F	ENST00000234420	NM_000179.2	63	tCc/tTc																																																																														
REL	5966	MSKCC	GRCh37	2	61147778	61147778	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0040281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	36	261	0	ENST00000295025.8:c.1087+1G>T		p.X363_splice	ENST00000295025	NM_002908.2	363																																																																															
LATS1	9113	MSKCC	GRCh37	6	150023018	150023018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	177	619	0	ENST00000253339.5:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000253339		82	cGa/cAa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784333	9784333	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	128	627	2	ENST00000377346.4:c.2719-1G>A		p.X907_splice	ENST00000377346	NM_005026.3	907																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087961	27087961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	146	590	0	ENST00000324856.7:c.2248C>T	p.Arg750Ter	p.R750*	ENST00000324856	NM_006015.4	750	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	158	589	1	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736557	85736557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	69	295	0	ENST00000370580.1:c.90G>T	p.Glu30Asp	p.E30D	ENST00000370580	NM_003921.4	30	gaG/gaT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510194	120510194	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199565938		P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	135	554	0	ENST00000256646.2:c.1315G>A	p.Ala439Thr	p.A439T	ENST00000256646	NM_024408.3	439	Gcc/Acc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870376	155870376	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	144	594	1	ENST00000368323.3:c.463G>T	p.Glu155Ter	p.E155*	ENST00000368323	NM_006912.5	155	Gaa/Taa																																																																														
PARP1	142	MSKCC	GRCh37	1	226578316	226578316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs193238922		P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	82	633	1	ENST00000366794.5:c.412C>T	p.Arg138Cys	p.R138C	ENST00000366794	NM_001618.3	138	Cgc/Tgc																																																																														
AKT3	10000	MSKCC	GRCh37	1	244006434	244006434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	170	664	0	ENST00000263826.5:c.39G>T	p.Gln13His	p.Q13H	ENST00000263826	NM_005465.4	13	caG/caT																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845627	63845627	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	77	309	0	ENST00000279873.7:c.1366G>T	p.Glu456Ter	p.E456*	ENST00000279873	NM_032199.2	456	Gaa/Taa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851828	63851828	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201944744		P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	224	770	0	ENST00000279873.7:c.2606C>A	p.Ser869Tyr	p.S869Y	ENST00000279873	NM_032199.2	869	tCt/tAt																																																																														
TET1	80312	MSKCC	GRCh37	10	70360773	70360773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	20	246	0	ENST00000373644.4:c.1950G>T	p.Lys650Asn	p.K650N	ENST00000373644	NM_030625.2	650	aaG/aaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	106	537	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720683	89720683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	31	103	0	ENST00000371953.3:c.834C>A	p.Phe278Leu	p.F278L	ENST00000371953	NM_000314.4	278	ttC/ttA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720870	89720870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	137	347	0	ENST00000371953.3:c.1021T>G	p.Phe341Val	p.F341V	ENST00000371953	NM_000314.4	341	Ttt/Gtt																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771467	112771467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	166	624	0	ENST00000369452.4:c.1640G>A	p.Ser547Asn	p.S547N	ENST00000369452	NM_007373.3	547	aGt/aAt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239530	123239530	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	289	1005	0	ENST00000358487.5:c.2307C>A	p.Tyr769Ter	p.Y769*	ENST00000358487	NM_000141.4	769	taC/taA																																																																														
YAP1	10413	MSKCC	GRCh37	11	102098216	102098216	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	139	499	0	ENST00000282441.5:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000282441	NM_001130145.2	394	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108172385	108172385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	74	486	0	ENST00000278616.4:c.5188C>T	p.Arg1730Ter	p.R1730*	ENST00000278616	NM_000051.3	1730	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	431589	431589	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	140	453	0	ENST00000399788.2:c.2420A>C	p.Lys807Thr	p.K807T	ENST00000399788	NM_001042603.1	807	aAa/aCa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658237	18658238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	49	550	0	ENST00000266497.5:c.3047dup	p.Tyr1017LeufsTer17	p.Y1017Lfs*17	ENST00000266497		1014	-/T																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	225	880	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861838	57861838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	176	811	0	ENST00000228682.2:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000228682	NM_005269.2	380	cGa/cAa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69210685	69210685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	37	392	0	ENST00000462284.1:c.268G>T	p.Asp90Tyr	p.D90Y	ENST00000462284	NM_002392.5	90	Gat/Tat																																																																														
SETD8	0	MSKCC	GRCh37	12	123889443	123889443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	40	546	0	ENST00000330479.4:c.670G>A	p.Asp224Asn	p.D224N	ENST00000330479	NM_020382.3	224	Gat/Aat																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	160	714	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28597505	28597505	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	129	525	0	ENST00000241453.7:c.2400A>C	p.Glu800Asp	p.E800D	ENST00000241453	NM_004119.2	800	gaA/gaC																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911751	32911751	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	57	524	0	ENST00000380152.3:c.3259A>G	p.Thr1087Ala	p.T1087A	ENST00000380152		1087	Acc/Gcc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911847	32911847	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	118	554	1	ENST00000380152.3:c.3355G>T	p.Glu1119Ter	p.E1119*	ENST00000380152		1119	Gaa/Taa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347911	73347911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146500302		P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	27	395	0	ENST00000377767.4:c.1150C>T	p.Arg384Cys	p.R384C	ENST00000377767	NM_014953.3	384	Cgc/Tgc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528078	103528078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	143	506	0	ENST00000355739.4:c.3386C>T	p.Ser1129Leu	p.S1129L	ENST00000355739	NM_000123.3	1129	tCg/tTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068866	30068866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	111	547	0	ENST00000331968.5:c.2063C>T	p.Thr688Ile	p.T688I	ENST00000331968	NM_002742.2	688	aCt/aTt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135385	30135385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	117	454	0	ENST00000331968.5:c.433C>T	p.Arg145Cys	p.R145C	ENST00000331968	NM_002742.2	145	Cgt/Tgt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569922	95569922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	38	506	0	ENST00000343455.3:c.3811C>T	p.Leu1271Phe	p.L1271F	ENST00000343455	NM_177438.2	1271	Ctc/Ttc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473664	67473664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	97	797	0	ENST00000327367.4:c.744C>A	p.Phe248Leu	p.F248L	ENST00000327367	NM_005902.3	248	ttC/ttA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3841994	3841994	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	61	381	0	ENST00000262367.5:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000262367	NM_004380.2	440	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858472	9858472	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	154	638	0	ENST00000330684.3:c.2929A>C	p.Asn977His	p.N977H	ENST00000330684	NM_001134407.1	977	Aac/Cac																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650710	67650710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	218	699	0	ENST00000264010.4:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000264010	NM_006565.3	339	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827580	72827580	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	193	727	2	ENST00000268489.5:c.9001G>T	p.Glu3001Ter	p.E3001*	ENST00000268489	NM_006885.3	3001	Gaa/Taa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347828	89347828	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	184	786	0	ENST00000301030.4:c.5122T>C	p.Ser1708Pro	p.S1708P	ENST00000301030	NM_001256183.1	1708	Tcg/Ccg																																																																														
NF1	4763	MSKCC	GRCh37	17	29562747	29562747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	143	529	0	ENST00000358273.4:c.3827G>A	p.Arg1276Gln	p.R1276Q	ENST00000358273	NM_001042492.2	1276	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29654856	29654856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	34	299	0	ENST00000358273.4:c.5608C>T	p.Arg1870Trp	p.R1870W	ENST00000358273	NM_001042492.2	1870	Cgg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	71	437	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30322617	30322617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	120	506	1	ENST00000322652.5:c.1630C>A	p.Leu544Ile	p.L544I	ENST00000322652	NM_015355.2	544	Ctt/Att																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58734107	58734107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	160	789	0	ENST00000305921.3:c.1165G>A	p.Asp389Asn	p.D389N	ENST00000305921	NM_003620.3	389	Gat/Aat																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	151	688	0	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																																																														
BCL2	596	MSKCC	GRCh37	18	60795942	60795942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	204	678	0	ENST00000333681.4:c.636C>A	p.Phe212Leu	p.F212L	ENST00000333681		212	ttC/ttA																																																																														
INSR	3643	MSKCC	GRCh37	19	7122751	7122751	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	174	731	1	ENST00000302850.5:c.3403G>T	p.Glu1135Ter	p.E1135*	ENST00000302850	NM_000208.2	1135	Gag/Tag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965932	18965932	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	185	792	0	ENST00000262803.5:c.1426-1G>A		p.X476_splice	ENST00000262803	NM_002911.3	476																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36216622	36216622	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	176	822	0	ENST00000222270.7:c.3790-2A>G		p.X1264_splice	ENST00000222270	NM_014727.1	1264																																																																															
CD79A	973	MSKCC	GRCh37	19	42383220	42383220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	69	799	0	ENST00000221972.3:c.240C>A	p.Phe80Leu	p.F80L	ENST00000221972	NM_021601.3	80	ttC/ttA																																																																														
CIC	23152	MSKCC	GRCh37	19	42796594	42796594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	38	824	1	ENST00000575354.2:c.3151G>A	p.Ala1051Thr	p.A1051T	ENST00000575354	NM_015125.3	1051	Gcc/Acc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716329	52716329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	184	765	0	ENST00000322088.6:c.773G>A	p.Arg258His	p.R258H	ENST00000322088	NM_014225.5	258	cGc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027594	48027594	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	88	380	0	ENST00000234420.5:c.2472A>C	p.Lys824Asn	p.K824N	ENST00000234420	NM_000179.2	824	aaA/aaC																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	122	593	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158617581	158617581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	97	543	0	ENST00000263640.3:c.1075G>A	p.Val359Ile	p.V359I	ENST00000263640	NM_001105.4	359	Gtc/Atc																																																																														
CASP8	841	MSKCC	GRCh37	2	202136322	202136322	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	137	503	0	ENST00000358485.4:c.566A>C	p.Lys189Thr	p.K189T	ENST00000358485	NM_001080125.1	189	aAa/aCa																																																																														
CASP8	841	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	160	601	0	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251595	212251595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	69	538	0	ENST00000342788.4:c.3464G>A	p.Arg1155Gln	p.R1155Q	ENST00000342788	NM_005235.2	1155	cGa/cAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212293161	212293161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	88	392	0	ENST00000342788.4:c.2691C>A	p.Phe897Leu	p.F897L	ENST00000342788	NM_005235.2	897	ttC/ttA																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259192	36259192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	168	761	1	ENST00000300305.3:c.299C>T	p.Ser100Phe	p.S100F	ENST00000300305		100	tCc/tTc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641252	12641252	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	43	583	0	ENST00000251849.4:c.1046T>G	p.Val349Gly	p.V349G	ENST00000251849	NM_002880.3	349	gTg/gGg																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180292	38180292	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1319438		P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	226	823	0	ENST00000396334.3:c.140C>A	p.Ser47Tyr	p.S47Y	ENST00000396334	NM_002468.4	47	tCt/tAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	113	408	0	ENST00000349496.5:c.109T>C	p.Ser37Pro	p.S37P	ENST00000349496	NM_001904.3	37	Tct/Cct																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	77	418	1	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																														
MITF	4286	MSKCC	GRCh37	3	69788814	69788814	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	99	433	0	ENST00000352241.4:c.66A>C	p.Lys22Asn	p.K22N	ENST00000352241	NM_198159.2	22	aaA/aaC																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119720985	119720985	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	165	591	0	ENST00000316626.5:c.190A>C	p.Asn64His	p.N64H	ENST00000316626		64	Aat/Cat																																																																														
ATR	545	MSKCC	GRCh37	3	142268448	142268448	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs564283952		P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	92	508	1	ENST00000350721.4:c.3044G>A	p.Arg1015Gln	p.R1015Q	ENST00000350721	NM_001184.3	1015	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922363	178922363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	104	436	0	ENST00000263967.3:c.1132T>C	p.Cys378Arg	p.C378R	ENST00000263967	NM_006218.2	378	Tgt/Cgt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430663	181430663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	201	802	1	ENST00000325404.1:c.515G>A	p.Ser172Asn	p.S172N	ENST00000325404	NM_003106.3	172	aGc/aAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55136805	55136805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41279521		P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	39	413	0	ENST00000257290.5:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000257290	NM_006206.4	376	cGa/cAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55953916	55953916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	28	433	0	ENST00000263923.4:c.3520G>T	p.Asp1174Tyr	p.D1174Y	ENST00000263923	NM_002253.2	1174	Gac/Tac																																																																														
TET2	54790	MSKCC	GRCh37	4	106158369	106158369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	66	360	0	ENST00000380013.4:c.3270G>T	p.Lys1090Asn	p.K1090N	ENST00000380013	NM_001127208.2	1090	aaG/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510192	187510192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	167	631	0	ENST00000441802.2:c.13321G>T	p.Asp4441Tyr	p.D4441Y	ENST00000441802	NM_005245.3	4441	Gac/Tac																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31486602	31486602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	89	446	0	ENST00000344624.3:c.1910C>T	p.Pro637Leu	p.P637L	ENST00000344624		637	cCg/cTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	144	364	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	111	419	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637141	176637141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	149	718	0	ENST00000439151.2:c.1741G>T	p.Glu581Ter	p.E581*	ENST00000439151	NM_022455.4	581	Gaa/Taa																																																																														
IRF4	3662	MSKCC	GRCh37	6	405111	405111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	159	652	0	ENST00000380956.4:c.1193G>T	p.Arg398Ile	p.R398I	ENST00000380956	NM_001195286.1	398	aGa/aTa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109315802	109315802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	124	517	0	ENST00000436639.2:c.983C>A	p.Ser328Tyr	p.S328Y	ENST00000436639	NM_014454.2	328	tCt/tAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609759	117609759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	134	585	0	ENST00000368508.3:c.6940G>T	p.Asp2314Tyr	p.D2314Y	ENST00000368508	NM_002944.2	2314	Gat/Tat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647564	117647564	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	112	559	0	ENST00000368508.3:c.5380A>C	p.Asn1794His	p.N1794H	ENST00000368508	NM_002944.2	1794	Aat/Cat																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519589	137519589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	102	462	0	ENST00000367739.4:c.1049C>A	p.Ser350Tyr	p.S350Y	ENST00000367739	NM_000416.2	350	tCt/tAt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152415537	152415537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	139	641	0	ENST00000206249.3:c.1387T>C	p.Ser463Pro	p.S463P	ENST00000206249	NM_000125.3	463	Tcc/Ccc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211097	55211097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	71	561	0	ENST00000275493.2:c.340G>A	p.Glu114Lys	p.E114K	ENST00000275493	NM_005228.3	114	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513160	106513160	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	92	366	0	ENST00000359195.3:c.2064C>A	p.Asn688Lys	p.N688K	ENST00000359195	NM_002649.2	688	aaC/aaA																																																																														
MET	4233	MSKCC	GRCh37	7	116339243	116339243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	118	443	0	ENST00000397752.3:c.105G>T	p.Met35Ile	p.M35I	ENST00000397752	NM_000245.2	35	atG/atT																																																																														
MET	4233	MSKCC	GRCh37	7	116411975	116411975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	208	847	2	ENST00000397752.3:c.2960G>A	p.Arg987Gln	p.R987Q	ENST00000397752	NM_000245.2	987	cGa/cAa																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538874	23538874	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	35	618	0	ENST00000380871.4:c.565G>T	p.Gly189Ter	p.G189*	ENST00000380871	NM_006167.3	189	Gga/Tga																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950493	68950493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	35	459	1	ENST00000288368.4:c.805G>A	p.Asp269Asn	p.D269N	ENST00000288368	NM_024870.2	269	Gat/Aat																																																																														
CD274	29126	MSKCC	GRCh37	9	5457177	5457177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	84	438	0	ENST00000381577.3:c.151G>A	p.Ala51Thr	p.A51T	ENST00000381577	NM_014143.3	51	Gct/Act																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341216	8341216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	39	428	0	ENST00000356435.5:c.5000C>A	p.Pro1667Gln	p.P1667Q	ENST00000356435		1667	cCa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	118	475	0	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27158095	27158095	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	93	685	0	ENST00000380036.4:c.319C>T	p.Arg107Ter	p.R107*	ENST00000380036	NM_000459.3	107	Cga/Tga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342871	87342871	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200996090		P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	112	453	0	ENST00000277120.3:c.1156G>A	p.Asp386Asn	p.D386N	ENST00000277120		386	Gat/Aat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135776149	135776149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	134	605	1	ENST00000298552.3:c.2578G>A	p.Glu860Lys	p.E860K	ENST00000298552	NM_001162426.1	860	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412685	139412694	+	protein_altering_variant	In_Frame_Del	DEL	AGTTGGAGCC	AGTTGGAGCC	G			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	193	969	0	ENST00000277541.6:c.1150_1159delinsC	p.Gly384_Cys387delinsArg	p.G384_C387delinsR	ENST00000277541	NM_017617.3	384	GGCTCCAACTgc/Cgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932732	39932732	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	237	1086	0	ENST00000378444.4:c.1867G>T	p.Glu623Ter	p.E623*	ENST00000378444	NM_001123385.1	623	Gaa/Taa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938415	44938415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	41	509	0	ENST00000377967.4:c.2963C>A	p.Thr988Asn	p.T988N	ENST00000377967	NM_021140.2	988	aCt/aAt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966775	44966775	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	56	673	0	ENST00000377967.4:c.3999T>G	p.Ile1333Met	p.I1333M	ENST00000377967	NM_021140.2	1333	atT/atG																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240792	53240792	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	153	749	0	ENST00000375401.3:c.1288A>C	p.Asn430His	p.N430H	ENST00000375401	NM_004187.3	430	Aat/Cat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410489	63410489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	178	854	0	ENST00000330258.3:c.2678G>T	p.Ser893Ile	p.S893I	ENST00000330258	NM_152424.3	893	aGc/aTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413008	63413008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	244	998	0	ENST00000330258.3:c.159G>T	p.Lys53Asn	p.K53N	ENST00000330258	NM_152424.3	53	aaG/aaT																																																																														
AR	367	MSKCC	GRCh37	X	66765778	66765778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	242	1041	0	ENST00000374690.3:c.790C>T	p.Arg264Trp	p.R264W	ENST00000374690	NM_000044.3	264	Cgg/Tgg																																																																														
MED12	9968	MSKCC	GRCh37	X	70344018	70344018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	156	805	0	ENST00000374080.3:c.1754G>A	p.Arg585Gln	p.R585Q	ENST00000374080		585	cGa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76829806	76829806	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	72	588	0	ENST00000373344.5:c.6235C>T	p.Arg2079Ter	p.R2079*	ENST00000373344	NM_000489.3	2079	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76920242	76920242	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	74	373	0	ENST00000373344.5:c.3835G>T	p.Glu1279Ter	p.E1279*	ENST00000373344	NM_000489.3	1279	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937751	76937751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	58	542	0	ENST00000373344.5:c.2997G>T	p.Lys999Asn	p.K999N	ENST00000373344	NM_000489.3	999	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76939073	76939073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	109	588	0	ENST00000373344.5:c.1675T>C	p.Ser559Pro	p.S559P	ENST00000373344	NM_000489.3	559	Tca/Cca																																																																														
ATM	472	MSKCC	GRCh37	11	108196812	108196812	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	23	253	0	ENST00000278616.4:c.6835A>T	p.Lys2279Ter	p.K2279*	ENST00000278616	NM_000051.3	2279	Aaa/Taa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2124309	2124309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	71	812	0	ENST00000219476.3:c.2464G>A	p.Ala822Thr	p.A822T	ENST00000219476	NM_000548.3	822	Gcg/Acg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470560	25470560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	334	552	1	ENST00000264709.3:c.914G>A	p.Trp305Ter	p.W305*	ENST00000264709	NM_175629.2	305	tGg/tAg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593606	55593650	+	inframe_deletion	In_Frame_Del	DEL	AAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGAC	AAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGAC	-			P-0040359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	100	273	0	ENST00000288135.5:c.1672_1716del	p.Lys558_Asp572del	p.K558_D572del	ENST00000288135	NM_000222.2	558	AAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGAC/-																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30664701	30664701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	92	193	0	ENST00000359013.4:c.105G>A	p.Met35Ile	p.M35I	ENST00000359013	NM_001024847.2	35	atG/atA																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0040618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	334	517	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	484	518	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	933	635	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165557	47165557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	340	476	0	ENST00000409792.3:c.569C>T	p.Pro190Leu	p.P190L	ENST00000409792	NM_014159.6	190	cCg/cTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692950	89692950	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	125	475	0	ENST00000371953.3:c.434T>G	p.Phe145Cys	p.F145C	ENST00000371953	NM_000314.4	145	tTt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	348	608	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878863	151878863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	95	420	0	ENST00000262189.6:c.6082C>T	p.Arg2028Ter	p.R2028*	ENST00000262189	NM_170606.2	2028	Cga/Tga																																																																														
TEK	7010	MSKCC	GRCh37	9	27172710	27172710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	37	483	0	ENST00000380036.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000380036	NM_000459.3	242	tGc/tAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	115	408	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	110	430	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156720	20156720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	139	450	0	ENST00000379607.5:c.37C>T	p.Arg13Cys	p.R13C	ENST00000379607	NM_001412.3	13	Cgc/Tgc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	116	413	1	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	264	575	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	166	498	8	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	94	388	6	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	149	474	6	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027998	48027998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	81	354	0	ENST00000234420.5:c.2876G>A	p.Arg959His	p.R959H	ENST00000234420	NM_000179.2	959	cGc/cAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676268	37676268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	204	611	0	ENST00000447079.4:c.3023G>A	p.Arg1008Gln	p.R1008Q	ENST00000447079	NM_015083.1	1008	cGg/cAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65309887	65309887	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	155	471	0	ENST00000342505.4:c.2263C>T	p.Arg755Ter	p.R755*	ENST00000342505	NM_002227.2	755	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	67	295	0	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																														
ERG	2078	MSKCC	GRCh37	21	39817414	39817414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	58	553	1	ENST00000288319.7:c.149G>A	p.Arg50His	p.R50H	ENST00000288319	NM_182918.3	50	cGc/cAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448565	89448565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	158	602	1	ENST00000336596.2:c.1529G>A	p.Arg510Gln	p.R510Q	ENST00000336596	NM_005233.5	510	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031815	10031815	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	237	665	0	ENST00000330684.3:c.1007+1G>A		p.X336_splice	ENST00000330684	NM_001134407.1	336																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	101	410	0	ENST00000274335.5:c.1746-2A>G		p.X582_splice	ENST00000274335		582																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843599	156843599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	331	925	2	ENST00000524377.1:c.1025G>A	p.Arg342Gln	p.R342Q	ENST00000524377	NM_002529.3	342	cGg/cAg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243778429	243778429	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	78	366	0	ENST00000263826.5:c.596T>C	p.Val199Ala	p.V199A	ENST00000263826	NM_005465.4	199	gTa/gCa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	359	1102	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274773	123274773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	63	638	1	ENST00000358487.5:c.1145G>A	p.Cys382Tyr	p.C382Y	ENST00000358487	NM_000141.4	382	tGc/tAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779650	3779650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	243	948	2	ENST00000262367.5:c.5398C>T	p.Arg1800Trp	p.R1800W	ENST00000262367	NM_004380.2	1800	Cgg/Tgg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106073	8106073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	175	612	2	ENST00000346208.3:c.893G>A	p.Arg298Gln	p.R298Q	ENST00000346208		298	cGg/cAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262346	16262346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201781067		P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	129	343	0	ENST00000375759.3:c.9611C>T	p.Thr3204Met	p.T3204M	ENST00000375759	NM_015001.2	3204	aCg/aTg																																																																														
SYK	6850	MSKCC	GRCh37	9	93636535	93636535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	184	555	0	ENST00000375746.1:c.965C>T	p.Pro322Leu	p.P322L	ENST00000375746	NM_001174167.1	322	cCg/cTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	219	678	0	ENST00000397062.3:c.241G>T	p.Gly81Cys	p.G81C	ENST00000397062	NM_006164.4	81	Ggt/Tgt																																																																														
STK40	83931	MSKCC	GRCh37	1	36807520	36807520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	272	803	0	ENST00000373129.3:c.1144C>T	p.Gln382Ter	p.Q382*	ENST00000373129	NM_032017.1	382	Cag/Tag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120483201	120483201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	150	453	0	ENST00000256646.2:c.3160G>T	p.Gly1054Cys	p.G1054C	ENST00000256646	NM_024408.3	1054	Ggc/Tgc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202492	67202492	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189269522		P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	182	914	0	ENST00000312629.5:c.1301G>A	p.Arg434Gln	p.R434Q	ENST00000312629	NM_003952.2	434	cGg/cAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245297	46245297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	149	525	0	ENST00000334344.6:c.3391C>A	p.Pro1131Thr	p.P1131T	ENST00000334344	NM_152641.2	1131	Cca/Aca																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859016	57859016	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	235	769	0	ENST00000228682.2:c.515del	p.Gly172AspfsTer8	p.G172Dfs*8	ENST00000228682	NM_005269.2	171	cGg/cg																																																																														
POLE	5426	MSKCC	GRCh37	12	133241010	133241010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	206	776	0	ENST00000320574.5:c.2507G>A	p.Cys836Tyr	p.C836Y	ENST00000320574	NM_006231.2	836	tGc/tAc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601312	28601312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	116	481	0	ENST00000241453.7:c.2120G>A	p.Arg707Lys	p.R707K	ENST00000241453	NM_004119.2	707	aGa/aAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655411	67655411	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	157	613	0	ENST00000264010.4:c.1274A>G	p.His425Arg	p.H425R	ENST00000264010	NM_006565.3	425	cAc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579428	7579428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	143	832	1	ENST00000269305.4:c.259C>T	p.Pro87Ser	p.P87S	ENST00000269305	NM_001126112.2	87	Cca/Tca																																																																														
MALT1	10892	MSKCC	GRCh37	18	56390322	56390322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	73	358	0	ENST00000348428.3:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000348428	NM_006785.3	354	cGg/cAg																																																																														
STK11	6794	MSKCC	GRCh37	19	1223108	1223108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	315	902	0	ENST00000326873.7:c.1045G>A	p.Glu349Lys	p.E349K	ENST00000326873	NM_000455.4	349	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211825	36211825	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	366	1109	1	ENST00000222270.7:c.1576C>T	p.Gln526Ter	p.Q526*	ENST00000222270	NM_014727.1	526	Cag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	29446313	29446313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	235	784	0	ENST00000389048.3:c.3254C>T	p.Thr1085Ile	p.T1085I	ENST00000389048	NM_004304.4	1085	aCc/aTc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656952	47656952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	114	382	0	ENST00000233146.2:c.1148G>A	p.Arg383Gln	p.R383Q	ENST00000233146	NM_000251.2	383	cGa/cAa																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881387	111881387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	156	579	0	ENST00000393256.3:c.65C>T	p.Ala22Val	p.A22V	ENST00000393256	NM_006538.4	22	gCg/gTg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128051213	128051213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	240	710	0	ENST00000285398.2:c.110C>A	p.Ala37Glu	p.A37E	ENST00000285398	NM_000122.1	37	gCg/gAg																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873409	136873409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	92	442	0	ENST00000241393.3:c.89G>A	p.Arg30His	p.R30H	ENST00000241393	NM_003467.2	30	cGt/cAt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662227	227662227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	267	845	0	ENST00000305123.5:c.1228C>T	p.Arg410Trp	p.R410W	ENST00000305123	NM_005544.2	410	Cgg/Tgg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157406028	157406028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	137	459	0	ENST00000346085.5:c.2270C>T	p.Ala757Val	p.A757V	ENST00000346085	NM_020732.3	757	gCa/gTa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078434	5078434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	85	409	0	ENST00000381652.3:c.2121G>T	p.Leu707Phe	p.L707F	ENST00000381652	NM_004972.3	707	ttG/ttT																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250170	110250170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	245	815	1	ENST00000374672.4:c.505G>A	p.Gly169Arg	p.G169R	ENST00000374672	NM_004235.4	169	Gga/Aga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227753	53227753	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	121	770	0	ENST00000375401.3:c.2435T>A	p.Leu812Gln	p.L812Q	ENST00000375401	NM_004187.3	812	cTg/cAg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	158	278	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29676154	29676155	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	158	262	0	ENST00000358273.4:c.7208dup	p.Ala2404CysfsTer18	p.A2404Cfs*18	ENST00000358273	NM_001042492.2	2402	-/C																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372071	55372071	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	358	502	0	ENST00000297316.4:c.761C>G	p.Ala254Gly	p.A254G	ENST00000297316	NM_022454.3	254	gCg/gGg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453145	140453146	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0041024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	19	266	0	ENST00000288602.6:c.1789_1790delinsTC	p.Leu597Ser	p.L597S	ENST00000288602	NM_004333.4	597	CTa/TCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	203	469	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	793	817	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0041072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	399	882	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	97	228	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3799626	3799626	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0041072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	66	515	0	ENST00000262367.5:c.3836+2T>G		p.X1279_splice	ENST00000262367	NM_004380.2	1279																																																																															
TP53	7157	MSKCC	GRCh37	17	7579530	7579531	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	317	722	0	ENST00000269305.4:c.156dupA	p.Trp53MetfsTer4	p.W53Mfs*4	ENST00000269305	NM_001126112.2	52	-/A																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417431	139417431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	268	656	0	ENST00000277541.6:c.613G>A	p.Val205Ile	p.V205I	ENST00000277541	NM_017617.3	205	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576923	7576928	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGTGCT	AGTGCT	-			P-0041285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	360	722	0	ENST00000269305.4:c.920-2_923del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660832	227660832	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	195	649	0	ENST00000305123.5:c.2623C>G	p.Arg875Gly	p.R875G	ENST00000305123	NM_005544.2	875	Cga/Gga																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247579	123247579	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	293	617	0	ENST00000358487.5:c.1912A>C	p.Asn638His	p.N638H	ENST00000358487	NM_000141.4	638	Aat/Cat																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350732	15350732	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	213	838	0	ENST00000263377.2:c.3271C>G	p.Pro1091Ala	p.P1091A	ENST00000263377	NM_058243.2	1091	Cct/Gct																																																																														
ALK	238	MSKCC	GRCh37	2	29551323	29551323	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	259	707	0	ENST00000389048.3:c.1307C>A	p.Ala436Asp	p.A436D	ENST00000389048	NM_004304.4	436	gCc/gAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41568503	41568503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0041345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	42	270	0	ENST00000263253.7:c.4453G>C	p.Asp1485His	p.D1485H	ENST00000263253	NM_001429.3	1485	Gat/Cat																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497711	125497711	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	68	283	0	ENST00000428830.2:c.275T>C	p.Leu92Pro	p.L92P	ENST00000428830	NM_001114121.2	92	cTt/cCt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435664	110435687	+	inframe_deletion	In_Frame_Del	DEL	GCTCCGGTGGCAGTGGGTACTCGT	GCTCCGGTGGCAGTGGGTACTCGT	-			P-0041345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	45	449	0	ENST00000375856.3:c.2714_2737del	p.His905_Glu912del	p.H905_E912del	ENST00000375856	NM_003749.2	905	cACGAGTACCCACTGCCACCGGAGCcc/ccc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522515	67522515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	23	155	0	ENST00000274335.5:c.12G>C	p.Glu4Asp	p.E4D	ENST00000274335		4	gaG/gaC																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	78	761	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42840410	42840411	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	134	571	0	ENST00000398585.3:c.1337_1338del	p.Arg446MetfsTer8	p.R446Mfs*8	ENST00000398585	NM_001135099.1	446	aGA/a																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500474	99500474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45475702		P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	44	766	0	ENST00000268035.6:c.3907G>A	p.Val1303Ile	p.V1303I	ENST00000268035	NM_000875.3	1303	Gtc/Atc																																																																														
TP63	8626	MSKCC	GRCh37	3	189582168	189582168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	51	498	1	ENST00000264731.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000264731	NM_003722.4	243	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258894	16258894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	249	937	0	ENST00000375759.3:c.6159C>A	p.Asn2053Lys	p.N2053K	ENST00000375759	NM_015001.2	2053	aaC/aaA																																																																														
MGA	23269	MSKCC	GRCh37	15	42042300	42042301	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	115	642	0	ENST00000219905.7:c.6499_6500del	p.Leu2167GlyfsTer27	p.L2167Gfs*27	ENST00000219905	NM_001164273.1	2165	gaCTct/gact																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372071	55372071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	48	375	2	ENST00000297316.4:c.761C>T	p.Ala254Val	p.A254V	ENST00000297316	NM_022454.3	254	gCg/gTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274018	10274018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	215	905	0	ENST00000330684.3:c.251C>T	p.Thr84Met	p.T84M	ENST00000330684	NM_001134407.1	84	aCg/aTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918548	44918548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	18	257	0	ENST00000377967.4:c.1031C>T	p.Ala344Val	p.A344V	ENST00000377967	NM_021140.2	344	gCt/gTt																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793049	33793049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	25	272	1	ENST00000498907.2:c.272C>T	p.Ala91Val	p.A91V	ENST00000498907	NM_004364.3	91	gCc/gTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905525	50905525	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150010804		P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	52	965	0	ENST00000440232.2:c.653G>A	p.Arg218His	p.R218H	ENST00000440232	NM_002691.3	218	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720965	176720965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	130	535	0	ENST00000439151.2:c.6596G>A	p.Arg2199His	p.R2199H	ENST00000439151	NM_022455.4	2199	cGt/cAt																																																																														
MED12	9968	MSKCC	GRCh37	X	70348536	70348536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	37	292	0	ENST00000374080.3:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000374080		1148	cGc/cAc																																																																														
HGF	3082	MSKCC	GRCh37	7	81374338	81374338	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202185530		P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	64	405	0	ENST00000222390.5:c.724C>T	p.Arg242Trp	p.R242W	ENST00000222390	NM_000601.4	242	Cgg/Tgg																																																																														
MED12	9968	MSKCC	GRCh37	X	70349948	70349948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	77	433	0	ENST00000374080.3:c.3931G>A	p.Val1311Met	p.V1311M	ENST00000374080		1311	Gtg/Atg																																																																														
STK40	83931	MSKCC	GRCh37	1	36809821	36809821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	202	816	0	ENST00000373129.3:c.784G>A	p.Val262Met	p.V262M	ENST00000373129	NM_032017.1	262	Gtg/Atg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104359190	104359190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	36	462	0	ENST00000369902.3:c.911A>G	p.Asp304Gly	p.D304G	ENST00000369902	NM_016169.3	304	gAc/gGc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572203	64572203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	57	433	0	ENST00000337652.1:c.1451G>A	p.Arg484Gln	p.R484Q	ENST00000337652	NM_130803.2	484	cGg/cAg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870962	12870962	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	33	405	0	ENST00000228872.4:c.192delT	p.Gln65ArgfsTer6	p.Q65Rfs*6	ENST00000228872	NM_004064.3	63	gaT/ga																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924325	112924325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	199	863	1	ENST00000351677.2:c.1271C>T	p.Pro424Leu	p.P424L	ENST00000351677	NM_002834.3	424	cCg/cTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646376	3646376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	178	883	0	ENST00000294008.3:c.1702G>A	p.Val568Met	p.V568M	ENST00000294008	NM_032444.2	568	Gtg/Atg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274204	10274204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	44	472	0	ENST00000330684.3:c.65C>T	p.Ala22Val	p.A22V	ENST00000330684	NM_001134407.1	22	gCg/gTg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17127391	17127391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	65	796	0	ENST00000285071.4:c.463A>G	p.Thr155Ala	p.T155A	ENST00000285071	NM_144997.5	155	Acc/Gcc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40353770	40353770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	169	795	0	ENST00000293328.3:c.2350C>T	p.His784Tyr	p.H784Y	ENST00000293328	NM_012448.3	784	Cac/Tac																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936801	78936801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	226	853	0	ENST00000306801.3:c.3883G>A	p.Gly1295Ser	p.G1295S	ENST00000306801	NM_020761.2	1295	Ggc/Agc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56409219	56409219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	112	527	1	ENST00000348428.3:c.1726C>T	p.Arg576Trp	p.R576W	ENST00000348428	NM_006785.3	576	Cgg/Tgg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47636839	47637373	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGTGTGCGCCTGTATTCCCAGCTACTGGGGAGGCTGAAGCAGGAGAATCGATTGAACCCTTGAGGCAGAGGTTGCAGTGAGTTGAGATCGCACCATTGCACTCTAGCCTGGGTGACAGAGCAAGACTTCATCTCAAAAAAAAGAGAAAACATTTTATTAATAAGGTTCATAGAGTTTGGATTTTTCCTTTTTGCTTATAAAATTTTAAAGTATGTTCAAGAGTTTGTTAAATTTTTAAAATTTTATTTTTACTTAGGCTTCTCCTGGCAATCTCTCTCAGTTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTTAAAATGTCCGCAGTTGATGGCCAGAGACAGGTTGGAGTTGGGTATGTGGATTCCATA	CTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGTGTGCGCCTGTATTCCCAGCTACTGGGGAGGCTGAAGCAGGAGAATCGATTGAACCCTTGAGGCAGAGGTTGCAGTGAGTTGAGATCGCACCATTGCACTCTAGCCTGGGTGACAGAGCAAGACTTCATCTCAAAAAAAAGAGAAAACATTTTATTAATAAGGTTCATAGAGTTTGGATTTTTCCTTTTTGCTTATAAAATTTTAAAGTATGTTCAAGAGTTTGTTAAATTTTTAAAATTTTATTTTTACTTAGGCTTCTCCTGGCAATCTCTCTCAGTTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTTAAAATGTCCGCAGTTGATGGCCAGAGACAGGTTGGAGTTGGGTATGTGGATTCCATA	-			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	54	0	0	ENST00000233146.2:c.367-393_508del		p.X123_splice	ENST00000233146	NM_000251.2	123																																																																															
JAK2	3717	MSKCC	GRCh37	9	5090503	5090503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	53	338	0	ENST00000381652.3:c.2819A>G	p.Tyr940Cys	p.Y940C	ENST00000381652	NM_004972.3	940	tAt/tGt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	97	820	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
CDH1	999	MSKCC	GRCh37	16	68847399	68847399	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0041361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	62	685	0	ENST00000261769.5:c.1320+1G>T		p.X440_splice	ENST00000261769	NM_004360.3	440																																																																															
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	247	291	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	312	849	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	128	298	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670357	134670357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	167	522	0	ENST00000398015.3:c.268C>T	p.Arg90Cys	p.R90C	ENST00000398015	NM_004441.4	90	Cgc/Tgc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	245	427	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174438	112174438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	84	323	0	ENST00000257430.4:c.3147G>A	p.Trp1049Ter	p.W1049*	ENST00000257430	NM_000038.5	1049	tgG/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	52	287	0	ENST00000257430.4:c.4497delA	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101438	27101438	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	212	652	0	ENST00000324856.7:c.4724del	p.Pro1575HisfsTer37	p.P1575Hfs*37	ENST00000324856	NM_006015.4	1574	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210710	36210710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	132	801	1	ENST00000222270.7:c.461G>A	p.Arg154His	p.R154H	ENST00000222270	NM_014727.1	154	cGc/cAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41527560	41527560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	205	551	0	ENST00000263253.7:c.1451C>A	p.Pro484His	p.P484H	ENST00000263253	NM_001429.3	484	cCc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0041454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	70	477	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	14	251	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	17	455	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0041457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	17	227	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	37	447	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708054	117708054	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	20	241	0	ENST00000368508.3:c.2123C>T	p.Ser708Leu	p.S708L	ENST00000368508	NM_002944.2	708	tCa/tTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638352	176638353	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	32	410	0	ENST00000439151.2:c.2954_2955del	p.Ser985CysfsTer25	p.S985Cfs*25	ENST00000439151	NM_022455.4	984	gaCTct/gact																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2214555	2214555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	37	472	2	ENST00000398665.3:c.1883G>A	p.Ser628Asn	p.S628N	ENST00000398665	NM_032482.2	628	aGc/aAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42795162	42795162	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	37	533	0	ENST00000575354.2:c.2245del	p.Leu749CysfsTer175	p.L749Cfs*175	ENST00000575354	NM_015125.3	748	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101143	27101145	+	frameshift_variant	Frame_Shift_Del	DEL	CAT	CAT	A			P-0041457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	30	440	0	ENST00000324856.7:c.4425_4427delinsA	p.Asn1475LysfsTer15	p.N1475Kfs*15	ENST00000324856	NM_006015.4	1475	aaCATg/aaAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229345	36229347	+	frameshift_variant	Frame_Shift_Del	DEL	CGC	CGC	A			P-0041457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	25	350	0	ENST00000222270.7:c.8035_8037delinsA	p.Arg2679AsnfsTer5	p.R2679Nfs*5	ENST00000222270	NM_014727.1	2679	CGC/A																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0041519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	37	288	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0041519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	66	669	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	117	617	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	76	854	0	ENST00000298229.2:c.1322delA	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0041519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	47	748	5	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663418	67663418	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	34	396	0	ENST00000264010.4:c.1819G>T	p.Glu607Ter	p.E607*	ENST00000264010	NM_006565.3	607	Gaa/Taa																																																																														
HIST2H3D	653604	MSKCC	GRCh37	1	149784863	149784863	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	26	243	0	ENST00000331491.1:c.374T>C	p.Ile125Thr	p.I125T	ENST00000331491	NM_001123375.2	125	aTc/aCc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466035	69466040	+	inframe_deletion	In_Frame_Del	DEL	GGACGT	GGACGT	-			P-0041519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	55	789	2	ENST00000227507.2:c.877_882del	p.Val293_Asp294del	p.V293_D294del	ENST00000227507	NM_053056.2	291	cgGGACGTg/cgg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1627405	1627405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199628190		P-0041519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	74	829	0	ENST00000344749.5:c.319G>A	p.Ala107Thr	p.A107T	ENST00000344749	NM_001136139.2	107	Gcc/Acc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181776	56181832	+	inframe_deletion	In_Frame_Del	DEL	TTGCTGAGTAAATATGGAGCCTTCAAAGAATCAGTAGTTATTAACTACACTGAACAG	TTGCTGAGTAAATATGGAGCCTTCAAAGAATCAGTAGTTATTAACTACACTGAACAG	-			P-0041519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	24	393	0	ENST00000399503.3:c.4002_4058del	p.Ser1336_Leu1354del	p.S1336_L1354del	ENST00000399503	NM_005921.1	1334	TTGCTGAGTAAATATGGAGCCTTCAAAGAATCAGTAGTTATTAACTACACTGAACAG/-																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15818025	15818025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	31	356	0	ENST00000307771.7:c.152C>G	p.Thr51Ser	p.T51S	ENST00000307771	NM_005089.3	51	aCt/aGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	132	509	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
AXL	558	MSKCC	GRCh37	19	41736935	41736935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	192	935	1	ENST00000301178.4:c.650G>A	p.Arg217His	p.R217H	ENST00000301178	NM_021913.4	217	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	114	358	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	155	597	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	146	703	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	357	953	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	109	356	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845830	72845830	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	189	711	2	ENST00000268489.5:c.3637del	p.Thr1213GlnfsTer31	p.T1213Qfs*31	ENST00000268489	NM_006885.3	1213	Aca/ca																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	80	382	4	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	132	348	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	245	475	1	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																														
SYK	6850	MSKCC	GRCh37	9	93606273	93606273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	182	987	1	ENST00000375746.1:c.98delG	p.Gly33AlafsTer2	p.G33Afs*2	ENST00000375746	NM_001174167.1	31	caG/ca																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612879	228612879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	168	755	0	ENST00000366696.1:c.148C>T	p.Arg50Cys	p.R50C	ENST00000366696	NM_003493.2	50	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	211	1083	3	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	137	617	0	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288789	15288789	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	52	240	0	ENST00000263388.2:c.3950del	p.Pro1317GlnfsTer103	p.P1317Qfs*103	ENST00000263388	NM_000435.2	1317	cCa/ca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221667	36221667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	196	1048	3	ENST00000222270.7:c.5336G>A	p.Arg1779Gln	p.R1779Q	ENST00000222270	NM_014727.1	1779	cGa/cAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209583	98209583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	150	847	0	ENST00000331920.6:c.3955C>T	p.Arg1319Cys	p.R1319C	ENST00000331920	NM_000264.3	1319	Cgc/Tgc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	163	1086	0	ENST00000220592.5:c.1805_1806dup	p.Ala603ProfsTer93	p.A603Pfs*93	ENST00000220592	NM_012154.3	602	-/CC																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212439	5212439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150241840		P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	148	1008	0	ENST00000357368.4:c.4678G>A	p.Val1560Met	p.V1560M	ENST00000357368	NM_002850.3	1560	Gtg/Atg																																																																														
SRC	6714	MSKCC	GRCh37	20	36030841	36030841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	109	481	0	ENST00000358208.4:c.1120G>A	p.Ala374Thr	p.A374T	ENST00000358208		374	Gcc/Acc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625302	69625302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	195	1119	4	ENST00000334134.2:c.491G>A	p.Arg164His	p.R164H	ENST00000334134	NM_005247.2	164	cGc/cAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65344759	65344759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	116	470	0	ENST00000342505.4:c.278G>A	p.Arg93His	p.R93H	ENST00000342505	NM_002227.2	93	cGc/cAc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77070026	77070026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	170	556	2	ENST00000356341.3:c.514C>T	p.Pro172Ser	p.P172S	ENST00000356341	NM_002576.4	172	Cca/Tca																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856274	111856274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	21	50	0	ENST00000341259.2:c.325G>A	p.Gly109Ser	p.G109S	ENST00000341259	NM_005475.2	109	Ggc/Agc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877417	28877417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	190	644	0	ENST00000282397.4:c.3904G>A	p.Glu1302Lys	p.E1302K	ENST00000282397	NM_002019.4	1302	Gaa/Aaa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133730	2133731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGGTTCCTGTGCTGGT			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	127	998	0	ENST00000219476.3:c.3920_3936dup	p.Glu1313ArgfsTer18	p.E1313Rfs*18	ENST00000219476	NM_000548.3	1306	-/GAGGTTCCTGTGCTGGT																																																																														
INSR	3643	MSKCC	GRCh37	19	7117218	7117218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	190	887	0	ENST00000302850.5:c.3998C>T	p.Ser1333Leu	p.S1333L	ENST00000302850	NM_000208.2	1333	tCg/tTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281350	15281350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	175	1038	0	ENST00000263388.2:c.4906C>T	p.Pro1636Ser	p.P1636S	ENST00000263388	NM_000435.2	1636	Cct/Tct																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955212	17955212	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	185	989	0	ENST00000458235.1:c.15T>G	p.Ser5Arg	p.S5R	ENST00000458235	NM_000215.3	5	agT/agG																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44515842	44515842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	138	610	0	ENST00000291552.4:c.211G>A	p.Asp71Asn	p.D71N	ENST00000291552	NM_006758.2	71	Gat/Aat																																																																														
BCL6	604	MSKCC	GRCh37	3	187447627	187447627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	194	951	1	ENST00000232014.4:c.566C>T	p.Ser189Phe	p.S189F	ENST00000232014	NM_001130845.1	189	tCc/tTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680046	30680046	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	148	698	0	ENST00000376406.3:c.1673delG	p.Gly558AspfsTer10	p.G558Dfs*10	ENST00000376406	NM_014641.2	558	gGa/ga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265487	152265487	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	179	712	0	ENST00000206249.3:c.940C>G	p.Gln314Glu	p.Q314E	ENST00000206249	NM_000125.3	314	Cag/Gag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391798	139391799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	190	974	0	ENST00000277541.6:c.6392dup	p.Thr2132HisfsTer136	p.T2132Hfs*136	ENST00000277541	NM_017617.3	2131	ggc/ggGc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223646	53223646	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	256	540	0	ENST00000375401.3:c.3713G>A	p.Trp1238Ter	p.W1238*	ENST00000375401	NM_004187.3	1238	tGg/tAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	12	326	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	21	473	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0041606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	55	487	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576917	7576918	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	G			P-0041606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	91	715	0	ENST00000269305.4:c.928_929delinsC	p.Asn310ProfsTer35	p.N310Pfs*35	ENST00000269305	NM_001126112.2	310	AAc/Cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	58	569	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435391	121435391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	175	1055	1	ENST00000257555.6:c.1424C>T	p.Pro475Leu	p.P475L	ENST00000257555		475	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0041650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	323	1020	2	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	211	824	0	ENST00000269305.4:c.532C>G	p.His178Asp	p.H178D	ENST00000269305	NM_001126112.2	178	Cac/Gac																																																																														
VHL	7428	MSKCC	GRCh37	3	10188215	10188215	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	76	326	0	ENST00000256474.2:c.358A>G	p.Arg120Gly	p.R120G	ENST00000256474	NM_000551.3	120	Aga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	24	474	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	9	297	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	49	533	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920449	114920449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	41	523	0	ENST00000543371.1:c.1390A>G	p.Arg464Gly	p.R464G	ENST00000543371	NM_001198531.1	464	Agg/Ggg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729962	30729962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	68	480	1	ENST00000359013.4:c.1558C>T	p.Arg520Ter	p.R520*	ENST00000359013	NM_001024847.2	520	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489571	56489571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	32	547	0	ENST00000267101.3:c.2036G>A	p.Arg679Gln	p.R679Q	ENST00000267101	NM_001982.3	679	cGa/cAa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780921	9780921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	118	782	1	ENST00000377346.4:c.1643G>A	p.Arg548Gln	p.R548Q	ENST00000377346	NM_005026.3	548	cGg/cAg																																																																														
ATR	545	MSKCC	GRCh37	3	142188271	142188271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202193482		P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	20	314	0	ENST00000350721.4:c.6460G>A	p.Asp2154Asn	p.D2154N	ENST00000350721	NM_001184.3	2154	Gat/Aat																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518013	176518013	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139464025		P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	178	680	0	ENST00000292408.4:c.511C>T	p.Arg171Cys	p.R171C	ENST00000292408	NM_213647.1	171	Cgc/Tgc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031926	26031926	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	34	355	0	ENST00000244661.2:c.363G>C	p.Met121Ile	p.M121I	ENST00000244661	NM_003537.3	121	atG/atC																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32191690	32191691	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAA			P-0041731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	85	722	1	ENST00000375023.3:c.15_16insTTG	p.Leu16dup	p.L16dup	ENST00000375023	NM_004557.3	16	-/TTG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	12	595	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	80	399	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	28	623	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	109	663	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	51	429	2	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	78	261	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	78	261	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	56	320	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	70	415	0	ENST00000241453.7:c.2955_2956delTC	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	40	189	1	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101300	27101300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	41	625	0	ENST00000324856.7:c.4582C>T	p.Arg1528Ter	p.R1528*	ENST00000324856	NM_006015.4	1528	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	34	337	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244454	46244454	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	20	419	0	ENST00000334344.6:c.2552del	p.Pro851HisfsTer4	p.P851Hfs*4	ENST00000334344	NM_152641.2	850	Ccc/cc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	121	682	0	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	84	640	5	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	40	250	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	122	683	4	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351359	89351359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	144	805	1	ENST00000301030.4:c.1591G>A	p.Ala531Thr	p.A531T	ENST00000301030	NM_001256183.1	531	Gcc/Acc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52724244	52724244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	103	386	0	ENST00000322088.6:c.1376G>A	p.Arg459His	p.R459H	ENST00000322088	NM_014225.5	459	cGc/cAc																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	88	433	5	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	360055	360055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	75	598	0	ENST00000262320.3:c.1034delC	p.Pro345HisfsTer69	p.P345Hfs*69	ENST00000262320	NM_003502.3	345	cCa/ca																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562748	21562748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	45	180	0	ENST00000382592.4:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000382592	NM_014572.2	391	Cgc/Tgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914741	39914741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	74	394	1	ENST00000378444.4:c.4621G>A	p.Asp1541Asn	p.D1541N	ENST00000378444	NM_001123385.1	1541	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	78	261	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	75	323	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
BLM	641	MSKCC	GRCh37	15	91310207	91310208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	53	231	0	ENST00000355112.3:c.2268dup	p.Asp757ArgfsTer18	p.D757Rfs*18	ENST00000355112	NM_000057.2	754	tca/tcAa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702581	52702581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	82	309	0	ENST00000394830.3:c.317A>G	p.Tyr106Cys	p.Y106C	ENST00000394830	NM_018313.4	106	tAt/tGt																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910368	29910368	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	91	595	0	ENST00000376809.5:c.38T>G	p.Leu13Arg	p.L13R	ENST00000376809	NM_002116.7	13	cTc/cGc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	84	455	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	133	574	1	ENST00000380036.4:c.1250delC	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620657	52620657	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	87	350	0	ENST00000394830.3:c.3096del	p.Phe1032LeufsTer102	p.F1032Lfs*102	ENST00000394830	NM_018313.4	1032	ttT/tt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023982	31023983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	24	522	0	ENST00000375687.4:c.3473dup	p.Asn1158LysfsTer6	p.N1158Kfs*6	ENST00000375687	NM_015338.5	1156	gga/ggAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	50	404	1	ENST00000262189.6:c.8389_8390del	p.Lys2797GlyfsTer11	p.K2797Gfs*11	ENST00000262189	NM_170606.2	2797	AAg/g																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528375	157528375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	113	662	0	ENST00000346085.5:c.6100C>T	p.Gln2034Ter	p.Q2034*	ENST00000346085	NM_020732.3	2034	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993509	72993509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	89	658	0	ENST00000268489.5:c.536delG	p.Gly179AlafsTer22	p.G179Afs*22	ENST00000268489	NM_006885.3	179	gGc/gc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727403	66727441	+	inframe_deletion	In_Frame_Del	DEL	TAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCT	TAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCT	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	71	382	0	ENST00000307102.5:c.120_158delAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCTT	p.Glu41_Phe53del	p.E41_F53del	ENST00000307102	NM_002755.3	40	cTAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCTtt/ctt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022593	31022593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	81	551	0	ENST00000375687.4:c.2078G>A	p.Arg693Gln	p.R693Q	ENST00000375687	NM_015338.5	693	cGa/cAa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323315	31323315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	24	373	0	ENST00000412585.2:c.674T>C	p.Leu225Pro	p.L225P	ENST00000412585	NM_005514.6	225	cTg/cCg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495375	56495377	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	70	544	0	ENST00000267101.3:c.3573_3575del	p.Glu1191del	p.E1191del	ENST00000267101	NM_001982.3	1189	GAA/-																																																																														
AR	367	MSKCC	GRCh37	X	66765127	66765127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	31	502	0	ENST00000374690.3:c.139G>A	p.Ala47Thr	p.A47T	ENST00000374690	NM_000044.3	47	Gca/Aca																																																																														
ERG	2078	MSKCC	GRCh37	21	39817415	39817415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148089492		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	72	478	1	ENST00000288319.7:c.148C>T	p.Arg50Cys	p.R50C	ENST00000288319	NM_182918.3	50	Cgc/Tgc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704481	117704481	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	46	235	1	ENST00000368508.3:c.2495del	p.Lys832ArgfsTer2	p.K832Rfs*2	ENST00000368508	NM_002944.2	832	aAg/ag																																																																														
PARK2	0	MSKCC	GRCh37	6	161969982	161969983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	47	620	0	ENST00000366898.1:c.986dup	p.Val330ArgfsTer17	p.V330Rfs*17	ENST00000366898	NM_004562.2	329	ggc/ggGc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47079250	47079250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	24	406	0	ENST00000409792.3:c.7256C>A	p.Pro2419His	p.P2419H	ENST00000409792	NM_014159.6	2419	cCt/cAt																																																																														
IRF4	3662	MSKCC	GRCh37	6	393304	393304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	21	429	1	ENST00000380956.4:c.152G>A	p.Arg51His	p.R51H	ENST00000380956	NM_001195286.1	51	cGc/cAc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363406	40363406	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	39	600	1	ENST00000397332.2:c.823del	p.Glu275LysfsTer11	p.E275Kfs*11	ENST00000397332	NM_001033082.2	275	Gaa/aa																																																																														
JUN	3725	MSKCC	GRCh37	1	59247872	59247872	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	176	785	0	ENST00000371222.2:c.871A>T	p.Asn291Tyr	p.N291Y	ENST00000371222	NM_002228.3	291	Aac/Tac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459193	120459193	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192122939		P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	74	493	0	ENST00000256646.2:c.6152G>A	p.Arg2051Gln	p.R2051Q	ENST00000256646	NM_024408.3	2051	cGg/cAg																																																																														
PARP1	142	MSKCC	GRCh37	1	226564883	226564883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	88	416	0	ENST00000366794.5:c.1867G>A	p.Gly623Arg	p.G623R	ENST00000366794	NM_001618.3	623	Ggg/Agg																																																																														
TET1	80312	MSKCC	GRCh37	10	70333282	70333282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	89	583	0	ENST00000373644.4:c.1187C>A	p.Pro396Gln	p.P396Q	ENST00000373644	NM_030625.2	396	cCa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720658	89720659	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	57	220	0	ENST00000371953.3:c.810_811del	p.Met270IlefsTer27	p.M270Ifs*27	ENST00000371953	NM_000314.4	270	aTG/a																																																																														
TBX3	6926	MSKCC	GRCh37	12	115111969	115111969	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	31	618	1	ENST00000257566.3:c.1770+1G>T		p.X590_splice	ENST00000257566	NM_016569.3	590																																																																															
MSI1	4440	MSKCC	GRCh37	12	120796850	120796850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	103	715	0	ENST00000257552.2:c.409G>A	p.Asp137Asn	p.D137N	ENST00000257552	NM_002442.3	137	Gac/Aac																																																																														
POLE	5426	MSKCC	GRCh37	12	133250170	133250170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	30	470	0	ENST00000320574.5:c.1350G>T	p.Glu450Asp	p.E450D	ENST00000320574	NM_006231.2	450	gaG/gaT																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988459	36988459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	21	377	0	ENST00000354822.5:c.194G>T	p.Gly65Val	p.G65V	ENST00000354822	NM_001079668.2	65	gGg/gTg																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68292200	68292200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	64	288	0	ENST00000487270.1:c.104C>T	p.Pro35Leu	p.P35L	ENST00000487270	NM_133509.3	35	cCa/cTa																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68878183	68878183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	56	332	0	ENST00000487270.1:c.896C>T	p.Thr299Ile	p.T299I	ENST00000487270	NM_133509.3	299	aCc/aTc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712798	43712799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	115	709	0	ENST00000382044.4:c.4385dup	p.Leu1462PhefsTer4	p.L1462Ffs*4	ENST00000382044	NM_001141980.1	1462	ttg/ttTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11172464	11172464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	43	633	0	ENST00000344626.4:c.4916G>A	p.Arg1639His	p.R1639H	ENST00000344626	NM_003072.3	1639	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229429	36229429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	77	463	3	ENST00000222270.7:c.8119G>A	p.Ala2707Thr	p.A2707T	ENST00000222270	NM_014727.1	2707	Gcc/Acc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753231	42753231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	118	787	0	ENST00000222329.4:c.1033C>A	p.Pro345Thr	p.P345T	ENST00000222329	NM_006494.2	345	Cct/Act																																																																														
CIC	23152	MSKCC	GRCh37	19	42799172	42799172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	86	732	0	ENST00000575354.2:c.4656C>A	p.Ser1552Arg	p.S1552R	ENST00000575354	NM_015125.3	1552	agC/agA																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919765	50919765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	87	639	0	ENST00000440232.2:c.2933G>A	p.Arg978His	p.R978H	ENST00000440232	NM_002691.3	978	cGt/cAt																																																																														
ALK	238	MSKCC	GRCh37	2	30143237	30143237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	97	341	0	ENST00000389048.3:c.289C>T	p.Pro97Ser	p.P97S	ENST00000389048	NM_004304.4	97	Ccg/Tcg																																																																														
BARD1	580	MSKCC	GRCh37	2	215633979	215633979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	83	290	0	ENST00000260947.4:c.1372G>T	p.Asp458Tyr	p.D458Y	ENST00000260947	NM_000465.2	458	Gac/Tac																																																																														
TOP1	7150	MSKCC	GRCh37	20	39729866	39729868	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	75	354	1	ENST00000361337.2:c.1188_1190del	p.Pro397del	p.P397del	ENST00000361337	NM_003286.2	394	tCTCct/tct																																																																														
ERG	2078	MSKCC	GRCh37	21	39774491	39774491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	28	416	0	ENST00000288319.7:c.661G>A	p.Ala221Thr	p.A221T	ENST00000288319	NM_182918.3	221	Gct/Act																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134884873	134884873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	82	480	0	ENST00000398015.3:c.1649T>C	p.Val550Ala	p.V550A	ENST00000398015	NM_004441.4	550	gTc/gCc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1955237	1955237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	90	392	1	ENST00000382891.5:c.2324C>A	p.Pro775Gln	p.P775Q	ENST00000382891	NM_133335.3	775	cCa/cAa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143067034	143067034	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	56	348	0	ENST00000262992.4:c.1679A>G	p.Lys560Arg	p.K560R	ENST00000262992	NM_001101669.1	560	aAg/aGg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592088	67592088	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	52	247	0	ENST00000274335.5:c.1907del	p.Asn636ThrfsTer26	p.N636Tfs*26	ENST00000274335		635	gAa/ga																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673754	30673754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	94	531	0	ENST00000376406.3:c.3206C>T	p.Pro1069Leu	p.P1069L	ENST00000376406	NM_014641.2	1069	cCc/cTc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199888	138199888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	50	400	0	ENST00000237289.4:c.1306G>A	p.Gly436Arg	p.G436R	ENST00000237289	NM_001270507.1	436	Ggg/Agg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945052	151945052	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	28	407	0	ENST00000262189.6:c.2467A>G	p.Ile823Val	p.I823V	ENST00000262189	NM_170606.2	823	Att/Gtt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994138	21994138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	89	490	0	ENST00000361570.3:c.316G>T	p.Gly106Cys	p.G106C	ENST00000361570	NM_058195.3	106	Ggt/Tgt																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006027	22006027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	128	554	0	ENST00000276925.6:c.376C>T	p.Arg126Cys	p.R126C	ENST00000276925	NM_004936.3	126	Cgc/Tgc																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006137	22006137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	100	417	1	ENST00000276925.6:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000276925	NM_004936.3	89	cGg/cAg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904842	101904842	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	39	247	0	ENST00000374994.4:c.830G>A	p.Trp277Ter	p.W277*	ENST00000374994	NM_004612.2	277	tGg/tAg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	1209	910	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225360671	225360671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	166	261	0	ENST00000264414.4:c.1720G>A	p.Glu574Lys	p.E574K	ENST00000264414	NM_003590.4	574	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	321	500	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123196830	123196830	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	298	212	0	ENST00000218089.9:c.1717C>T	p.Gln573Ter	p.Q573*	ENST00000218089	NM_001042749.1	573	Cag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884028	37884028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	612	807	0	ENST00000269571.5:c.3499C>G	p.Leu1167Val	p.L1167V	ENST00000269571		1167	Ctg/Gtg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111884834	111884834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181079548		P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	221	433	2	ENST00000341259.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000341259	NM_005475.2	308	cGa/cAa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481609	56481609	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	502	656	0	ENST00000267101.3:c.644A>G	p.Asn215Ser	p.N215S	ENST00000267101	NM_001982.3	215	aAt/aGt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	217	625	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	257	480	8	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748660	43748661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	127	789	0	ENST00000382044.4:c.2145dup	p.Glu716ArgfsTer9	p.E716Rfs*9	ENST00000382044	NM_001141980.1	715	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106916	27106917	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	182	570	0	ENST00000324856.7:c.6532dup	p.Asp2178GlyfsTer47	p.D2178Gfs*47	ENST00000324856	NM_006015.4	2176	cag/caGg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205808	128205808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	444	631	0	ENST00000341105.2:c.67G>A	p.Asp23Asn	p.D23N	ENST00000341105	NM_032638.4	23	Gac/Aac																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918843	50918843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	714	891	1	ENST00000440232.2:c.2713G>A	p.Glu905Lys	p.E905K	ENST00000440232	NM_002691.3	905	Gag/Aag																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022989	33022990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	258	473	0	ENST00000300177.4:c.104dup	p.Pro36AlafsTer8	p.P36Afs*8	ENST00000300177	NM_001191322.1	33	atc/atCc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096202	178096202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	231	438	0	ENST00000397062.3:c.1129G>A	p.Glu377Lys	p.E377K	ENST00000397062	NM_006164.4	377	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108214078	108214078	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	103	303	0	ENST00000278616.4:c.8398C>T	p.Gln2800Ter	p.Q2800*	ENST00000278616	NM_000051.3	2800	Cag/Tag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198268359	198268359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	244	429	0	ENST00000335508.6:c.1669G>C	p.Asp557His	p.D557H	ENST00000335508	NM_012433.2	557	Gat/Cat																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204666	128204666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	514	773	0	ENST00000341105.2:c.775G>A	p.Asp259Asn	p.D259N	ENST00000341105	NM_032638.4	259	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	826	436	0				ENST00000310581	NM_198253.2																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198265573	198265573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	152	472	0	ENST00000335508.6:c.2584G>A	p.Glu862Lys	p.E862K	ENST00000335508	NM_012433.2	862	Gaa/Aaa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40854926	40854926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	211	582	0	ENST00000428826.2:c.2152C>T	p.Gln718Ter	p.Q718*	ENST00000428826		718	Caa/Taa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11269500	11269500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	267	450	0	ENST00000361445.4:c.3670G>A	p.Asp1224Asn	p.D1224N	ENST00000361445	NM_004958.3	1224	Gat/Aat																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699531	117699531	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	113	341	0	ENST00000369458.3:c.110T>C	p.Ile37Thr	p.I37T	ENST00000369458	NM_024626.3	37	aTc/aCc																																																																														
RET	5979	MSKCC	GRCh37	10	43598005	43598005	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	58	867	0	ENST00000355710.3:c.553T>C	p.Phe185Leu	p.F185L	ENST00000355710	NM_020975.4	185	Ttc/Ctc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104386958	104386958	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	116	311	0	ENST00000369902.3:c.1323G>C	p.Glu441Asp	p.E441D	ENST00000369902	NM_016169.3	441	gaG/gaC																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719902	18719902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	235	418	0	ENST00000266497.5:c.3799C>A	p.Leu1267Ile	p.L1267I	ENST00000266497		1267	Cta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425526	49425526	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	560	987	1	ENST00000301067.7:c.12962C>A	p.Ser4321Ter	p.S4321*	ENST00000301067	NM_003482.3	4321	tCa/tAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432641	49432641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	157	826	0	ENST00000301067.7:c.8498T>C	p.Met2833Thr	p.M2833T	ENST00000301067	NM_003482.3	2833	aTg/aCg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431484	121431484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	431	714	0	ENST00000257555.6:c.688G>C	p.Glu230Gln	p.E230Q	ENST00000257555		230	Gag/Cag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061633	38061633	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	59	222	0	ENST00000250448.2:c.356A>G	p.Gln119Arg	p.Q119R	ENST00000250448	NM_004496.3	119	cAg/cGg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2221263	2221263	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	104	726	1	ENST00000326181.6:c.349-2A>G		p.X117_splice	ENST00000326181	NM_032271.2	117																																																																															
SLX4	84464	MSKCC	GRCh37	16	3639882	3639882	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	103	755	0	ENST00000294008.3:c.3757A>G	p.Thr1253Ala	p.T1253A	ENST00000294008	NM_032444.2	1253	Acc/Gcc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89337235	89337235	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	233	617	0	ENST00000301030.4:c.7796A>C	p.Asp2599Ala	p.D2599A	ENST00000301030	NM_001256183.1	2599	gAc/gCc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719761	190719761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	157	262	0	ENST00000441310.2:c.1763A>G	p.Gln588Arg	p.Q588R	ENST00000441310	NM_000534.4	588	cAg/cGg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30954199	30954199	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	96	326	0	ENST00000375687.4:c.70T>G	p.Tyr24Asp	p.Y24D	ENST00000375687	NM_015338.5	24	Tac/Gac																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205718	128205718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	543	748	1	ENST00000341105.2:c.157G>T	p.Asp53Tyr	p.D53Y	ENST00000341105	NM_032638.4	53	Gac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112116599	112116599	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	69	317	0	ENST00000257430.4:c.644A>C	p.Gln215Pro	p.Q215P	ENST00000257430	NM_000038.5	215	cAg/cCg																																																																														
MDC1-AS1	106478956	MSKCC	GRCh37	6	30680464	30680464	+	splice_acceptor_variant,non_coding_transcript_variant	Splice_Site	SNP	G	G	C			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	165	519	0	ENST00000442150.1:n.242-1G>C		p.X81_splice	ENST00000442150		81																																																																															
ROS1	6098	MSKCC	GRCh37	6	117665288	117665288	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	53	369	0	ENST00000368508.3:c.4459T>C	p.Tyr1487His	p.Y1487H	ENST00000368508	NM_002944.2	1487	Tac/Cac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151896483	151896483	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	172	345	0	ENST00000262189.6:c.4154del	p.Asn1385IlefsTer15	p.N1385Ifs*15	ENST00000262189	NM_170606.2	1385	aAt/at																																																																														
JAK2	3717	MSKCC	GRCh37	9	5077456	5077456	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	43	218	0	ENST00000381652.3:c.1868T>G	p.Ile623Ser	p.I623S	ENST00000381652	NM_004972.3	623	aTt/aGt																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128305436	128305436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	55	622	0	ENST00000265960.3:c.860A>G	p.His287Arg	p.H287R	ENST00000265960	NM_001006617.1	287	cAt/cGt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035198	6035198	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	CA			P-0042109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	315	454	0	ENST00000265849.7:c.870delinsTG	p.Phe291ValfsTer8	p.F291Vfs*8	ENST00000265849	NM_000535.5	290	ttC/ttTG																																																																														
PTEN	5728	MSKCC	GRCh37	10	89712017	89712017	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0042153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	253	273	0	ENST00000371953.3:c.634+1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88683138	88683138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	541	542	0	ENST00000372037.3:c.1348G>T	p.Val450Leu	p.V450L	ENST00000372037	NM_004329.2	450	Gtg/Ttg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207024	1207024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	90	712	0	ENST00000326873.7:c.112C>G	p.Pro38Ala	p.P38A	ENST00000326873	NM_000455.4	38	Ccg/Gcg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	16	106	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																														
VHL	7428	MSKCC	GRCh37	3	10183787	10183787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	101	871	0	ENST00000256474.2:c.256C>T	p.Pro86Ser	p.P86S	ENST00000256474	NM_000551.3	86	Ccc/Tcc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47142950	47142950	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0042198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	39	469	0	ENST00000409792.3:c.5013del	p.Tyr1671Ter	p.Y1671*	ENST00000409792	NM_014159.6	1671	taT/ta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	96	743	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	66	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	68	236	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244392	5244392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	112	817	0	ENST00000357368.4:c.1090G>A	p.Val364Ile	p.V364I	ENST00000357368	NM_002850.3	364	Gtc/Atc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518366	8518366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	48	307	0	ENST00000356435.5:c.1025C>T	p.Thr342Met	p.T342M	ENST00000356435		342	aCg/aTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945503	17945503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	87	748	3	ENST00000458235.1:c.2227C>T	p.Gln743Ter	p.Q743*	ENST00000458235	NM_000215.3	743	Cag/Tag																																																																														
MST1	4485	MSKCC	GRCh37	3	49723354	49723354	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	49	465	0	ENST00000449682.2:c.1189A>T	p.Ser397Cys	p.S397C	ENST00000449682	NM_020998.3	397	Agc/Tgc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268210	153268211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	30	264	0	ENST00000281708.4:c.596_597dup	p.Val200LeufsTer40	p.V200Lfs*40	ENST00000281708	NM_033632.3	199	-/TT																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119813	70119822	+	protein_altering_variant	In_Frame_Del	DEL	ACGTGGACAT	ACGTGGACAT	G			P-0042225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	97	860	0	ENST00000245479.2:c.815_824delinsG	p.Asp272_Ile275delinsGly	p.D272_I275delinsG	ENST00000245479	NM_000346.3	272	gACGTGGACATc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	134	326	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0042257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	526	421	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716327	52716327	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	395	646	0	ENST00000322088.6:c.771G>C	p.Trp257Cys	p.W257C	ENST00000322088	NM_014225.5	257	tgG/tgC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0042257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	371	896	2	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593367	67593367	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	81	293	0	ENST00000274335.5:c.2113C>T	p.Gln705Ter	p.Q705*	ENST00000274335		705	Cag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589580	67589585	+	inframe_deletion	In_Frame_Del	DEL	AATTAC	AATTAC	-			P-0042257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	24	166	0	ENST00000274335.5:c.1344_1349del	p.Lys448_His450delinsAsn	p.K448_H450delinsN	ENST00000274335		448	aAATTACat/aat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0042335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	153	183	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380282	25380282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	168	384	0	ENST00000256078.4:c.176C>G	p.Ala59Gly	p.A59G	ENST00000256078	NM_033360.2	59	gCa/gGa																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	61	459	0	ENST00000374080.3:c.130G>C	p.Gly44Arg	p.G44R	ENST00000374080		44	Ggt/Cgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859693	151859693	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146298908		P-0042335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	114	273	0	ENST00000262189.6:c.10969G>A	p.Asp3657Asn	p.D3657N	ENST00000262189	NM_170606.2	3657	Gac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106100	27106100	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	285	424	0	ENST00000324856.7:c.5715delA	p.Lys1905AsnfsTer18	p.K1905Nfs*18	ENST00000324856	NM_006015.4	1904	gAa/ga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654659	67654659	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	154	397	0	ENST00000264010.4:c.1148del	p.Leu383CysfsTer12	p.L383Cfs*12	ENST00000264010	NM_006565.3	382	agT/ag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696742	47696742	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0042335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	199	206	0	ENST00000347630.2:c.206T>A	p.Leu69Ter	p.L69*	ENST00000347630	NM_001007230.1	69	tTg/tAg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589609	67589610	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAA			P-0042335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	95	53	0	ENST00000274335.5:c.1376_1378dup	p.Lys459dup	p.K459dup	ENST00000274335		459	gaa/gAAAaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956787	68956787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	203	482	2	ENST00000288368.4:c.905C>T	p.Thr302Met	p.T302M	ENST00000288368	NM_024870.2	302	aCg/aTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717653	89717654	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0042335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	133	308	0	ENST00000371953.3:c.678_679delinsA	p.Ser227ProfsTer29	p.S227Pfs*29	ENST00000371953	NM_000314.4	226	tcCTcc/tcAcc																																																																														
MPL	4352	MSKCC	GRCh37	1	43805683	43805683	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	82	571	1	ENST00000372470.3:c.739C>T	p.Gln247Ter	p.Q247*	ENST00000372470	NM_005373.2	247	Cag/Tag																																																																														
MGA	23269	MSKCC	GRCh37	15	42026741	42026741	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	71	369	0	ENST00000219905.7:c.3865C>G	p.Pro1289Ala	p.P1289A	ENST00000219905	NM_001164273.1	1289	Ccc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0042359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	320	500	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670255	134670255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	279	421	0	ENST00000398015.3:c.166C>T	p.Arg56Cys	p.R56C	ENST00000398015	NM_004441.4	56	Cgc/Tgc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245002	41245002	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	310	494	0	ENST00000357654.3:c.2546A>G	p.Glu849Gly	p.E849G	ENST00000357654	NM_007294.3	849	gAa/gGa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777114	9777114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	181	671	0	ENST00000377346.4:c.878C>T	p.Ala293Val	p.A293V	ENST00000377346	NM_005026.3	293	gCc/gTc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780803	9780803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	149	599	0	ENST00000377346.4:c.1525C>A	p.Leu509Met	p.L509M	ENST00000377346	NM_005026.3	509	Ctg/Atg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780827	9780827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	60	695	1	ENST00000377346.4:c.1549C>T	p.Arg517Trp	p.R517W	ENST00000377346	NM_005026.3	517	Cgg/Tgg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783301	9783301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	45	537	0	ENST00000377346.4:c.2545G>A	p.Ala849Thr	p.A849T	ENST00000377346	NM_005026.3	849	Gcc/Acc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188576	11188576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	88	404	0	ENST00000361445.4:c.5845C>T	p.Pro1949Ser	p.P1949S	ENST00000361445	NM_004958.3	1949	Ccc/Tcc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190747	11190747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	203	649	1	ENST00000361445.4:c.5452C>T	p.Arg1818Cys	p.R1818C	ENST00000361445	NM_004958.3	1818	Cgt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260332	16260332	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	111	452	0	ENST00000375759.3:c.7597A>G	p.Thr2533Ala	p.T2533A	ENST00000375759	NM_015001.2	2533	Acc/Gcc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261146	16261146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	85	404	0	ENST00000375759.3:c.8411C>T	p.Ala2804Val	p.A2804V	ENST00000375759	NM_015001.2	2804	gCg/gTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264376	16264376	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141170345		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	153	640	0	ENST00000375759.3:c.10579G>A	p.Val3527Ile	p.V3527I	ENST00000375759	NM_015001.2	3527	Gtc/Atc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16265348	16265348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	159	664	0	ENST00000375759.3:c.10840G>A	p.Val3614Ile	p.V3614I	ENST00000375759	NM_015001.2	3614	Gtt/Att																																																																														
SDHB	6390	MSKCC	GRCh37	1	17345405	17345405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	29	458	0	ENST00000375499.3:c.814A>G	p.Thr272Ala	p.T272A	ENST00000375499	NM_003000.2	272	Acc/Gcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101611	27101612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	174	717	0	ENST00000324856.7:c.4899dupC	p.Met1634HisfsTer14	p.M1634Hfs*14	ENST00000324856	NM_006015.4	1631	-/C																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	98	428	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																														
SESN2	83667	MSKCC	GRCh37	1	28607291	28607291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	133	491	0	ENST00000253063.3:c.1421C>T	p.Ala474Val	p.A474V	ENST00000253063	NM_031459.4	474	gCc/gTc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797139	45797139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150792276		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	189	806	0	ENST00000372115.3:c.1234C>T	p.Arg412Cys	p.R412C	ENST00000372115	NM_001048171.1	412	Cgt/Tgt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798968	45798968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	52	724	0	ENST00000372115.3:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000372115	NM_001048171.1	112	cGg/cAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65344759	65344759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	80	330	0	ENST00000342505.4:c.278G>A	p.Arg93His	p.R93H	ENST00000342505	NM_002227.2	93	cGc/cAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115252323	115252323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	72	293	0	ENST00000369535.4:c.317C>T	p.Ser106Leu	p.S106L	ENST00000369535	NM_002524.4	106	tCg/tTg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115262240	115262240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	91	328	0	ENST00000438362.2:c.2314C>T	p.Arg772Cys	p.R772C	ENST00000438362	NM_001242891.1	772	Cgc/Tgc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166467	118166467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	81	307	1	ENST00000369448.3:c.977G>A	p.Arg326His	p.R326H	ENST00000369448	NM_017709.3	326	cGc/cAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458783	120458783	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139052054		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	89	533	0	ENST00000256646.2:c.6562G>A	p.Ala2188Thr	p.A2188T	ENST00000256646	NM_024408.3	2188	Gcc/Acc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120471802	120471802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	78	370	0	ENST00000256646.2:c.3689C>T	p.Ala1230Val	p.A1230V	ENST00000256646	NM_024408.3	1230	gCc/gTc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870336	155870336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	106	446	0	ENST00000368323.3:c.503G>A	p.Arg168His	p.R168H	ENST00000368323	NM_006912.5	168	cGc/cAc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740170	162740170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	112	446	0	ENST00000367921.3:c.1372C>T	p.Arg458Cys	p.R458C	ENST00000367921	NM_006182.2	458	Cgc/Tgc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163317716	163317716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	25	227	0	ENST00000271452.3:c.1112G>A	p.Arg371His	p.R371H	ENST00000271452	NM_145697.2	371	cGc/cAc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054920	176054920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	18	334	0	ENST00000367669.3:c.1133G>A	p.Arg378His	p.R378H	ENST00000367669	NM_022457.5	378	cGt/cAt																																																																														
MDM4	4194	MSKCC	GRCh37	1	204512023	204512023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	57	308	0	ENST00000367182.3:c.623G>A	p.Ser208Asn	p.S208N	ENST00000367182	NM_001278516.1	208	aGc/aAc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649566	206649566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	62	564	1	ENST00000367120.3:c.401G>A	p.Arg134His	p.R134H	ENST00000367120	NM_014002.3	134	cGc/cAc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206667312	206667312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	154	590	2	ENST00000367120.3:c.2105G>A	p.Arg702His	p.R702H	ENST00000367120	NM_014002.3	702	cGc/cAc																																																																														
PARP1	142	MSKCC	GRCh37	1	226567817	226567817	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	46	663	0	ENST00000366794.5:c.1349A>G	p.Asn450Ser	p.N450S	ENST00000366794	NM_001618.3	450	aAc/aGc																																																																														
PARP1	142	MSKCC	GRCh37	1	226578316	226578316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs193238922		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	105	462	3	ENST00000366794.5:c.412C>T	p.Arg138Cys	p.R138C	ENST00000366794	NM_001618.3	138	Cgc/Tgc																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612974	228612974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	103	367	0	ENST00000366696.1:c.53G>A	p.Arg18His	p.R18H	ENST00000366696	NM_003493.2	18	cGc/cAc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243736326	243736326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	74	337	0	ENST00000263826.5:c.721C>T	p.Arg241Trp	p.R241W	ENST00000263826	NM_005465.4	241	Cgg/Tgg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246091314	246091314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	55	444	0	ENST00000388985.4:c.621C>A	p.Ser207Arg	p.S207R	ENST00000388985		207	agC/agA																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097653	8097653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	60	225	0	ENST00000346208.3:c.35G>A	p.Ser12Asn	p.S12N	ENST00000346208		12	aGc/aAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115837	8115837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200935603		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	140	579	1	ENST00000346208.3:c.1183G>A	p.Ala395Thr	p.A395T	ENST00000346208		395	Gcc/Acc																																																																														
RET	5979	MSKCC	GRCh37	10	43597831	43597831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	165	749	0	ENST00000355710.3:c.379C>A	p.Leu127Met	p.L127M	ENST00000355710	NM_020975.4	127	Ctg/Atg																																																																														
RET	5979	MSKCC	GRCh37	10	43607597	43607597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	170	793	1	ENST00000355710.3:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000355710	NM_020975.4	525	Cgg/Tgg																																																																														
RET	5979	MSKCC	GRCh37	10	43609108	43609108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	54	782	1	ENST00000355710.3:c.1864C>T	p.Pro622Ser	p.P622S	ENST00000355710	NM_020975.4	622	Ccc/Tcc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332760	70332760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	101	480	1	ENST00000373644.4:c.665G>A	p.Arg222His	p.R222H	ENST00000373644	NM_030625.2	222	cGc/cAc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88677054	88677054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	33	477	0	ENST00000372037.3:c.839C>A	p.Thr280Asn	p.T280N	ENST00000372037	NM_004329.2	280	aCt/aAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624267	89624267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	88	321	0	ENST00000371953.3:c.41G>A	p.Arg14Lys	p.R14K	ENST00000371953	NM_000314.4	14	aGg/aAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	39	376	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104377135	104377135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	65	666	0	ENST00000369902.3:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000369902	NM_016169.3	416	Gcc/Acc																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771563	112771563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	76	386	0	ENST00000369452.4:c.1736G>A	p.Arg579His	p.R579H	ENST00000369452	NM_007373.3	579	cGt/cAt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279549	123279549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	80	698	0	ENST00000358487.5:c.883G>A	p.Glu295Lys	p.E295K	ENST00000358487	NM_000141.4	295	Gaa/Aaa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310860	123310860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147987917		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	35	483	1	ENST00000358487.5:c.568C>T	p.Arg190Trp	p.R190W	ENST00000358487	NM_000141.4	190	Cgg/Tgg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325146	123325146	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199575491		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	145	498	0	ENST00000358487.5:c.182G>A	p.Arg61His	p.R61H	ENST00000358487	NM_000141.4	61	cGc/cAc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	71	228	2	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129418	64129418	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	176	779	2	ENST00000334205.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000334205	NM_003942.2	284	Cga/Tga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137075	64137075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	78	295	1	ENST00000334205.4:c.1586G>A	p.Arg529His	p.R529H	ENST00000334205	NM_003942.2	529	cGc/cAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137357	64137357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	50	649	0	ENST00000334205.4:c.1789G>A	p.Val597Ile	p.V597I	ENST00000334205	NM_003942.2	597	Gtc/Atc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939804	71939804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	179	727	2	ENST00000298229.2:c.431G>A	p.Arg144His	p.R144H	ENST00000298229	NM_001567.3	144	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940586	71940586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	172	640	1	ENST00000298229.2:c.737G>A	p.Arg246His	p.R246H	ENST00000298229	NM_001567.3	246	cGc/cAc																																																																														
EED	8726	MSKCC	GRCh37	11	85961344	85961344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138343311		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	96	157	0	ENST00000263360.6:c.121G>A	p.Ala41Thr	p.A41T	ENST00000263360	NM_003797.3	41	Gct/Act																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197307	94197308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	77	377	0	ENST00000323929.3:c.1196dup	p.Arg400GlnfsTer3	p.R400Qfs*3	ENST00000323929	NM_005591.3	399	ttc/ttTc																																																																														
YAP1	10413	MSKCC	GRCh37	11	102033288	102033288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	171	540	0	ENST00000282441.5:c.674T>C	p.Met225Thr	p.M225T	ENST00000282441	NM_001130145.2	225	aTg/aCg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102196254	102196254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	64	251	1	ENST00000263464.3:c.911C>T	p.Ser304Phe	p.S304F	ENST00000263464	NM_001165.4	304	tCt/tTt																																																																														
ATM	472	MSKCC	GRCh37	11	108098524	108098524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148061139		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	44	187	0	ENST00000278616.4:c.94C>T	p.Arg32Cys	p.R32C	ENST00000278616	NM_000051.3	32	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108121670	108121670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	32	401	0	ENST00000278616.4:c.1478G>A	p.Arg493His	p.R493H	ENST00000278616	NM_000051.3	493	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108143471	108143471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	54	376	0	ENST00000278616.4:c.3176C>T	p.Ala1059Val	p.A1059V	ENST00000278616	NM_000051.3	1059	gCc/gTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373671	118373671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	83	429	0	ENST00000534358.1:c.7064C>T	p.Ala2355Val	p.A2355V	ENST00000534358	NM_005933.3	2355	gCt/gTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373689	118373689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	42	413	0	ENST00000534358.1:c.7082C>T	p.Ser2361Leu	p.S2361L	ENST00000534358	NM_005933.3	2361	tCg/tTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118380737	118380737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	33	366	0	ENST00000534358.1:c.10975C>T	p.Arg3659Trp	p.R3659W	ENST00000534358	NM_005933.3	3659	Cgg/Tgg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392025	118392025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	99	435	1	ENST00000534358.1:c.11536C>A	p.Leu3846Ile	p.L3846I	ENST00000534358	NM_005933.3	3846	Ctt/Att																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497562	125497562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	57	239	1	ENST00000428830.2:c.126G>A	p.Met42Ile	p.M42I	ENST00000428830	NM_001114121.2	42	atG/atA																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416748	416748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	55	242	0	ENST00000399788.2:c.3802G>A	p.Glu1268Lys	p.E1268K	ENST00000399788	NM_001042603.1	1268	Gaa/Aaa																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022880	12022880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	148	615	0	ENST00000396373.4:c.986C>T	p.Ala329Val	p.A329V	ENST00000396373	NM_001987.4	329	gCc/gTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435431	18435431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	56	227	1	ENST00000266497.5:c.416C>T	p.Ser139Phe	p.S139F	ENST00000266497		139	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544061	18544061	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	39	217	0	ENST00000266497.5:c.1878T>A	p.Asp626Glu	p.D626E	ENST00000266497		626	gaT/gaA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552608	18552609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	25	310	0	ENST00000266497.5:c.2023dup	p.Arg675LysfsTer12	p.R675Kfs*12	ENST00000266497		673	-/A																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123879	46123879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	74	240	0	ENST00000334344.6:c.145G>A	p.Gly49Ser	p.G49S	ENST00000334344	NM_152641.2	49	Ggt/Agt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427308	49427308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	104	498	1	ENST00000301067.7:c.11180G>A	p.Arg3727His	p.R3727H	ENST00000301067	NM_003482.3	3727	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431810	49431810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	102	572	0	ENST00000301067.7:c.9329G>A	p.Arg3110His	p.R3110H	ENST00000301067	NM_003482.3	3110	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433357	49433357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	86	630	0	ENST00000301067.7:c.8090G>A	p.Arg2697His	p.R2697H	ENST00000301067	NM_003482.3	2697	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438204	49438204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	52	684	1	ENST00000301067.7:c.5065C>T	p.Arg1689Cys	p.R1689C	ENST00000301067	NM_003482.3	1689	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447880	49447880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	50	573	0	ENST00000301067.7:c.554G>A	p.Arg185His	p.R185H	ENST00000301067	NM_003482.3	185	cGc/cAc																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233239	69233240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	58	264	0	ENST00000462284.1:c.1111dup	p.Thr371AsnfsTer5	p.T371Nfs*5	ENST00000462284	NM_002392.5	368	-/A																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856059	111856059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	85	238	0	ENST00000341259.2:c.110C>T	p.Ala37Val	p.A37V	ENST00000341259	NM_005475.2	37	gCg/gTg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112919959	112919959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	79	371	0	ENST00000351677.2:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000351677	NM_002834.3	392	Gcc/Acc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109974	115109974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	160	653	2	ENST00000257566.3:c.1904G>A	p.Arg635His	p.R635H	ENST00000257566	NM_016569.3	635	cGc/cAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112022	115112022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	194	756	1	ENST00000257566.3:c.1718C>T	p.Ala573Val	p.A573V	ENST00000257566	NM_016569.3	573	gCg/gTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112154	115112154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	137	584	2	ENST00000257566.3:c.1586del	p.Gly529AlafsTer103	p.G529Afs*103	ENST00000257566	NM_016569.3	529	gGc/gc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112230	115112230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	79	242	1	ENST00000257566.3:c.1510G>A	p.Ala504Thr	p.A504T	ENST00000257566	NM_016569.3	504	Gcc/Acc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112610	115112610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	180	753	1	ENST00000257566.3:c.1130C>T	p.Ala377Val	p.A377V	ENST00000257566	NM_016569.3	377	gCc/gTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118737	115118737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	112	500	3	ENST00000257566.3:c.604G>A	p.Val202Ile	p.V202I	ENST00000257566	NM_016569.3	202	Gtc/Atc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118880	115118880	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	72	377	0	ENST00000257566.3:c.461A>G	p.Asp154Gly	p.D154G	ENST00000257566	NM_016569.3	154	gAc/gGc																																																																														
POLE	5426	MSKCC	GRCh37	12	133202283	133202283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	152	741	0	ENST00000320574.5:c.6605C>T	p.Thr2202Met	p.T2202M	ENST00000320574	NM_006231.2	2202	aCg/aTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133225553	133225553	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs151278283		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	50	570	1	ENST00000320574.5:c.4111C>T	p.Arg1371Ter	p.R1371*	ENST00000320574	NM_006231.2	1371	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133250214	133250214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	115	596	0	ENST00000320574.5:c.1306C>T	p.Pro436Ser	p.P436S	ENST00000320574	NM_006231.2	436	Ccc/Tcc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549352	21549352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	94	602	0	ENST00000382592.4:c.2924C>T	p.Ala975Val	p.A975V	ENST00000382592	NM_014572.2	975	gCc/gTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32920978	32920978	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	69	344	1	ENST00000380152.3:c.6952C>T	p.Arg2318Ter	p.R2318*	ENST00000380152		2318	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972786	32972786	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	94	402	0	ENST00000380152.3:c.10136A>G	p.Tyr3379Cys	p.Y3379C	ENST00000380152		3379	tAt/tGt																																																																														
RB1	5925	MSKCC	GRCh37	13	48955573	48955573	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	19	242	0	ENST00000267163.4:c.1689G>A	p.Trp563Ter	p.W563*	ENST00000267163	NM_000321.2	563	tgG/tgA																																																																														
DIS3	22894	MSKCC	GRCh37	13	73351583	73351583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	43	193	0	ENST00000377767.4:c.629G>A	p.Arg210His	p.R210H	ENST00000377767	NM_014953.3	210	cGt/cAt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514451	103514451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	41	207	0	ENST00000355739.4:c.952T>C	p.Ser318Pro	p.S318P	ENST00000355739	NM_000123.3	318	Tct/Cct																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518182	103518182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	40	241	0	ENST00000355739.4:c.2120G>A	p.Arg707Lys	p.R707K	ENST00000355739	NM_000123.3	707	aGg/aAg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519196	103519196	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	54	284	0	ENST00000355739.4:c.2533+1G>A		p.X845_splice	ENST00000355739	NM_000123.3	845																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434905	110434905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	205	702	2	ENST00000375856.3:c.3496G>A	p.Ala1166Thr	p.A1166T	ENST00000375856	NM_003749.2	1166	Gcc/Acc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435004	110435004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	179	496	1	ENST00000375856.3:c.3397G>A	p.Ala1133Thr	p.A1133T	ENST00000375856	NM_003749.2	1133	Gcc/Acc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437401	110437402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	44	189	0	ENST00000375856.3:c.999dup	p.Ser334GlnfsTer205	p.S334Qfs*205	ENST00000375856	NM_003749.2	333	-/C																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093456	30093456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	60	293	0	ENST00000331968.5:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000331968	NM_002742.2	603	Cgt/Tgt																																																																														
RAD51B	5890	MSKCC	GRCh37	14	69061312	69061313	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	26	117	0	ENST00000487270.1:c.1153dup	p.Ter385LeufsTer15	p.*385Lfs*15	ENST00000487270	NM_133509.3	383	att/aTtt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571498	95571498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	86	343	0	ENST00000343455.3:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000343455	NM_177438.2	1060	cGc/cAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574729	95574729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	54	353	0	ENST00000343455.3:c.2368C>T	p.Arg790Trp	p.R790W	ENST00000343455	NM_177438.2	790	Cgg/Tgg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582083	95582083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	68	304	0	ENST00000343455.3:c.1828G>A	p.Val610Ile	p.V610I	ENST00000343455	NM_177438.2	610	Gtt/Att																																																																														
AKT1	207	MSKCC	GRCh37	14	105239893	105239893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	162	602	0	ENST00000349310.3:c.727C>T	p.Arg243Cys	p.R243C	ENST00000349310	NM_001014432.1	243	Cgt/Tgt																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643737	38643737	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	156	634	2	ENST00000299084.4:c.1207C>T	p.Arg403Ter	p.R403*	ENST00000299084	NM_152594.2	403	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42059313	42059313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	32	326	0	ENST00000219905.7:c.9033G>A	p.Met3011Ile	p.M3011I	ENST00000219905	NM_001164273.1	3011	atG/atA																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714099	43714099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139105949		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	195	693	0	ENST00000382044.4:c.4054G>A	p.Ala1352Thr	p.A1352T	ENST00000382044	NM_001141980.1	1352	Gca/Aca																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43720288	43720288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	111	483	0	ENST00000382044.4:c.3754C>T	p.Arg1252Cys	p.R1252C	ENST00000382044	NM_001141980.1	1252	Cgc/Tgc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43739624	43739624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	67	337	0	ENST00000382044.4:c.2776G>A	p.Ala926Thr	p.A926T	ENST00000382044	NM_001141980.1	926	Gca/Aca																																																																														
CD276	80381	MSKCC	GRCh37	15	73996182	73996182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	194	690	0	ENST00000318443.5:c.916G>A	p.Ala306Thr	p.A306T	ENST00000318443	NM_001024736.1	306	Gcc/Acc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631661	90631661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	155	651	0	ENST00000330062.3:c.608G>A	p.Gly203Asp	p.G203D	ENST00000330062	NM_002168.2	203	gGt/gAt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456332	99456332	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	86	411	0	ENST00000268035.6:c.1649A>G	p.Asn550Ser	p.N550S	ENST00000268035	NM_000875.3	550	aAc/aGc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99472802	99472802	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	123	373	0	ENST00000268035.6:c.2798T>C	p.Phe933Ser	p.F933S	ENST00000268035	NM_000875.3	933	tTc/tCc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343707	343707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	196	866	1	ENST00000262320.3:c.1967C>T	p.Thr656Met	p.T656M	ENST00000262320	NM_003502.3	656	aCg/aTg																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2094737	2094737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	201	740	1	ENST00000219066.1:c.443C>T	p.Ala148Val	p.A148V	ENST00000219066	NM_002528.5	148	gCg/gTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121604	2121604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	92	678	0	ENST00000219476.3:c.1933G>A	p.Val645Ile	p.V645I	ENST00000219476	NM_000548.3	645	Gtc/Atc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130244	2130244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	183	758	0	ENST00000219476.3:c.3476G>A	p.Arg1159Gln	p.R1159Q	ENST00000219476	NM_000548.3	1159	cGg/cAg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130321	2130321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	79	716	1	ENST00000219476.3:c.3553G>A	p.Ala1185Thr	p.A1185T	ENST00000219476	NM_000548.3	1185	Gcc/Acc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2213960	2213961	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	149	659	0	ENST00000326181.6:c.45dupG	p.Pro16AlafsTer33	p.P16Afs*33	ENST00000326181	NM_032271.2	13	-/G																																																																														
SLX4	84464	MSKCC	GRCh37	16	3634827	3634827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	51	701	2	ENST00000294008.3:c.4682C>T	p.Thr1561Met	p.T1561M	ENST00000294008	NM_032444.2	1561	aCg/aTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3634834	3634834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	169	656	1	ENST00000294008.3:c.4675C>T	p.Pro1559Ser	p.P1559S	ENST00000294008	NM_032444.2	1559	Ccc/Tcc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639566	3639566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	66	797	0	ENST00000294008.3:c.4073C>T	p.Ala1358Val	p.A1358V	ENST00000294008	NM_032444.2	1358	gCt/gTt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3656543	3656543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	198	705	0	ENST00000294008.3:c.692G>A	p.Cys231Tyr	p.C231Y	ENST00000294008	NM_032444.2	231	tGc/tAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3656568	3656568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	203	701	0	ENST00000294008.3:c.667C>T	p.Arg223Cys	p.R223C	ENST00000294008	NM_032444.2	223	Cgt/Tgt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778708	3778708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139169188		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	137	761	0	ENST00000262367.5:c.6340G>A	p.Gly2114Ser	p.G2114S	ENST00000262367	NM_004380.2	2114	Ggc/Agc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779041	3779041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	134	578	3	ENST00000262367.5:c.6007C>T	p.Pro2003Ser	p.P2003S	ENST00000262367	NM_004380.2	2003	Ccc/Tcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900759	3900759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	126	494	0	ENST00000262367.5:c.337G>A	p.Ala113Thr	p.A113T	ENST00000262367	NM_004380.2	113	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900861	3900861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	98	537	0	ENST00000262367.5:c.235G>A	p.Gly79Ser	p.G79S	ENST00000262367	NM_004380.2	79	Ggc/Agc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020477	14020477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	72	297	2	ENST00000311895.7:c.448C>T	p.Arg150Cys	p.R150C	ENST00000311895	NM_005236.2	150	Cgc/Tgc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14042128	14042128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	65	259	0	ENST00000311895.7:c.2675C>T	p.Ala892Val	p.A892V	ENST00000311895	NM_005236.2	892	gCa/gTa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641369	23641369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	178	728	0	ENST00000261584.4:c.2106A>G	p.Ile702Met	p.I702M	ENST00000261584	NM_024675.3	702	atA/atG																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647553	23647553	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	110	530	0	ENST00000261584.4:c.314A>G	p.Glu105Gly	p.E105G	ENST00000261584	NM_024675.3	105	gAg/gGg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785686	50785686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	115	528	0	ENST00000398568.2:c.676G>A	p.Glu226Lys	p.E226K	ENST00000398568	NM_001042412.1	226	Gaa/Aaa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813941	50813941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	84	457	0	ENST00000398568.2:c.1495G>A	p.Ala499Thr	p.A499T	ENST00000398568	NM_001042412.1	499	Gct/Act																																																																														
CYLD	1540	MSKCC	GRCh37	16	50828327	50828327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	75	326	1	ENST00000398568.2:c.2665G>A	p.Ala889Thr	p.A889T	ENST00000398568	NM_001042412.1	889	Gcc/Acc																																																																														
CDH1	999	MSKCC	GRCh37	16	68835737	68835737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	163	519	0	ENST00000261769.5:c.328T>C	p.Phe110Leu	p.F110L	ENST00000261769	NM_004360.3	110	Ttt/Ctt																																																																														
CDH1	999	MSKCC	GRCh37	16	68842740	68842740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	88	394	0	ENST00000261769.5:c.676G>A	p.Ala226Thr	p.A226T	ENST00000261769	NM_004360.3	226	Gcc/Acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822234	72822234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	45	712	0	ENST00000268489.5:c.9941G>A	p.Gly3314Asp	p.G3314D	ENST00000268489	NM_006885.3	3314	gGc/gAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832176	72832176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	106	414	0	ENST00000268489.5:c.4405G>A	p.Ala1469Thr	p.A1469T	ENST00000268489	NM_006885.3	1469	Gcc/Acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845829	72845830	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	139	524	0	ENST00000268489.5:c.3637dup	p.Thr1213AsnfsTer3	p.T1213Nfs*3	ENST00000268489	NM_006885.3	1213	aca/aAca																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81960745	81960745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	38	528	0	ENST00000359376.3:c.2476G>A	p.Asp826Asn	p.D826N	ENST00000359376	NM_002661.3	826	Gac/Aac																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965192	81965192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	79	560	0	ENST00000359376.3:c.2672A>G	p.Asp891Gly	p.D891G	ENST00000359376	NM_002661.3	891	gAc/gGc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346867	89346867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	48	285	0	ENST00000301030.4:c.6083C>T	p.Pro2028Leu	p.P2028L	ENST00000301030	NM_001256183.1	2028	cCc/cTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347732	89347732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	167	573	1	ENST00000301030.4:c.5218G>A	p.Ala1740Thr	p.A1740T	ENST00000301030	NM_001256183.1	1740	Gcc/Acc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350882	89350882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	177	831	0	ENST00000301030.4:c.2068G>A	p.Asp690Asn	p.D690N	ENST00000301030	NM_001256183.1	690	Gat/Aat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351148	89351148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	130	564	1	ENST00000301030.4:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000301030	NM_001256183.1	601	cGa/cAa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805896	89805896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	46	540	0	ENST00000389301.3:c.4000G>A	p.Ala1334Thr	p.A1334T	ENST00000389301	NM_000135.2	1334	Gct/Act																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216765	7216765	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	82	365	0	ENST00000380728.2:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000380728		220	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579317	7579317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	140	533	0	ENST00000269305.4:c.370T>C	p.Cys124Arg	p.C124R	ENST00000269305	NM_001126112.2	124	Tgc/Cgc																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110189	8110189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	101	535	0	ENST00000585124.1:c.416G>A	p.Arg139His	p.R139H	ENST00000585124	NM_004217.3	139	cGt/cAt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15952271	15952271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150237987		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	139	589	0	ENST00000268712.3:c.6424G>A	p.Val2142Ile	p.V2142I	ENST00000268712	NM_006311.3	2142	Gtc/Atc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965207	15965207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	73	245	0	ENST00000268712.3:c.5389C>T	p.Pro1797Ser	p.P1797S	ENST00000268712	NM_006311.3	1797	Cca/Tca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049855	16049855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	44	233	0	ENST00000268712.3:c.917A>G	p.Lys306Arg	p.K306R	ENST00000268712	NM_006311.3	306	aAa/aGa																																																																														
NF1	4763	MSKCC	GRCh37	17	29557286	29557286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	46	234	0	ENST00000358273.4:c.2999G>A	p.Arg1000His	p.R1000H	ENST00000358273	NM_001042492.2	1000	cGt/cAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29560097	29560097	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	39	248	0	ENST00000358273.4:c.3574G>T	p.Glu1192Ter	p.E1192*	ENST00000358273	NM_001042492.2	1192	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29562689	29562689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	35	413	0	ENST00000358273.4:c.3769C>T	p.Leu1257Phe	p.L1257F	ENST00000358273	NM_001042492.2	1257	Ctc/Ttc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30264510	30264510	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	23	373	0	ENST00000322652.5:c.245A>T	p.Asp82Val	p.D82V	ENST00000322652	NM_015355.2	82	gAc/gTc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30326004	30326005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769517721		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	51	255	0	ENST00000322652.5:c.2208dup	p.Gln737ThrfsTer20	p.Q737Tfs*20	ENST00000322652	NM_015355.2	734	-/A																																																																														
RARA	5914	MSKCC	GRCh37	17	38510717	38510717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	92	501	1	ENST00000254066.5:c.971C>T	p.Ala324Val	p.A324V	ENST00000254066	NM_000964.3	324	gCg/gTg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40353767	40353767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	158	611	0	ENST00000293328.3:c.2353G>A	p.Ala785Thr	p.A785T	ENST00000293328	NM_012448.3	785	Gca/Aca																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40376882	40376882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	61	421	1	ENST00000293328.3:c.290C>T	p.Thr97Met	p.T97M	ENST00000293328	NM_012448.3	97	aCg/aTg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40474434	40474434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	44	427	0	ENST00000264657.5:c.1967G>A	p.Gly656Asp	p.G656D	ENST00000264657	NM_139276.2	656	gGc/gAc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40860050	40860050	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201655400		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	193	641	0	ENST00000428826.2:c.1586G>A	p.Arg529His	p.R529H	ENST00000428826		529	cGc/cAc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40872289	40872289	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	98	514	0	ENST00000428826.2:c.664+2T>C		p.X222_splice	ENST00000428826		222																																																																															
EZH1	2145	MSKCC	GRCh37	17	40872344	40872344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	138	659	0	ENST00000428826.2:c.611A>G	p.Asp204Gly	p.D204G	ENST00000428826		204	gAc/gGc																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804268	46804268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	161	665	0	ENST00000290295.7:c.739C>T	p.Arg247Cys	p.R247C	ENST00000290295	NM_006361.5	247	Cgc/Tgc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699369	47699369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	54	356	0	ENST00000347630.2:c.139G>A	p.Glu47Lys	p.E47K	ENST00000347630	NM_001007230.1	47	Gaa/Aaa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120500	70120500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	249	884	0	ENST00000245479.2:c.1502C>T	p.Pro501Leu	p.P501L	ENST00000245479	NM_000346.3	501	cCc/cTc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78727919	78727919	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	46	483	0	ENST00000306801.3:c.764T>C	p.Ile255Thr	p.I255T	ENST00000306801	NM_020761.2	255	aTc/aCc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78933917	78933917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	160	607	0	ENST00000306801.3:c.3517T>C	p.Ser1173Pro	p.S1173P	ENST00000306801	NM_020761.2	1173	Tcc/Ccc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78933971	78933971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	176	657	0	ENST00000306801.3:c.3571C>T	p.Arg1191Cys	p.R1191C	ENST00000306801	NM_020761.2	1191	Cgc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591960	48591960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	29	294	0	ENST00000342988.3:c.1123G>A	p.Ala375Thr	p.A375T	ENST00000342988	NM_005359.5	375	Gcc/Acc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604739	48604739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	84	363	0	ENST00000342988.3:c.1561A>G	p.Thr521Ala	p.T521A	ENST00000342988	NM_005359.5	521	Aca/Gca																																																																														
STK11	6794	MSKCC	GRCh37	19	1207078	1207078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	175	849	0	ENST00000326873.7:c.166G>A	p.Gly56Arg	p.G56R	ENST00000326873	NM_000455.4	56	Ggg/Agg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207591	2207591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	143	612	0	ENST00000398665.3:c.875G>A	p.Arg292His	p.R292H	ENST00000398665	NM_032482.2	292	cGc/cAc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210815	2210815	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200004531		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	130	472	0	ENST00000398665.3:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000398665	NM_032482.2	438	Gct/Act																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4090706	4090706	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	62	670	0	ENST00000262948.5:c.1093A>G	p.Asn365Asp	p.N365D	ENST00000262948	NM_030662.3	365	Aac/Gac																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4101230	4101230	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	118	706	3	ENST00000262948.5:c.577C>T	p.Arg193Ter	p.R193*	ENST00000262948	NM_030662.3	193	Cga/Tga																																																																														
INSR	3643	MSKCC	GRCh37	19	7125515	7125515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	53	500	1	ENST00000302850.5:c.3037C>T	p.Pro1013Ser	p.P1013S	ENST00000302850	NM_000208.2	1013	Ccg/Tcg																																																																														
INSR	3643	MSKCC	GRCh37	19	7132295	7132295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	38	546	0	ENST00000302850.5:c.2716G>A	p.Ala906Thr	p.A906T	ENST00000302850	NM_000208.2	906	Gct/Act																																																																														
INSR	3643	MSKCC	GRCh37	19	7267574	7267574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	153	680	0	ENST00000302850.5:c.434G>A	p.Arg145His	p.R145H	ENST00000302850	NM_000208.2	145	cGc/cAc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246949	10246949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	200	601	3	ENST00000340748.4:c.4456G>A	p.Asp1486Asn	p.D1486N	ENST00000340748		1486	Gac/Aac																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265415	10265415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	159	677	1	ENST00000340748.4:c.1631G>A	p.Arg544His	p.R544H	ENST00000340748		544	cGc/cAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610306	10610306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	219	789	1	ENST00000171111.5:c.404G>A	p.Arg135His	p.R135H	ENST00000171111	NM_203500.1	135	cGc/cAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610427	10610427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	178	648	0	ENST00000171111.5:c.283G>A	p.Ala95Thr	p.A95T	ENST00000171111	NM_203500.1	95	Gcc/Acc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11032374	11032374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	174	733	0	ENST00000327064.4:c.1768G>A	p.Ala590Thr	p.A590T	ENST00000327064	NM_199141.1	590	Gcc/Acc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097117	11097117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	122	607	2	ENST00000344626.4:c.608C>T	p.Ala203Val	p.A203V	ENST00000344626	NM_003072.3	203	gCg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097672	11097672	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	151	727	0	ENST00000344626.4:c.852G>A	p.Trp284Ter	p.W284*	ENST00000344626	NM_003072.3	284	tgG/tgA																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11118684	11118684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	97	667	0	ENST00000344626.4:c.2108C>T	p.Ala703Val	p.A703V	ENST00000344626	NM_003072.3	703	gCg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132633	11132633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	161	676	0	ENST00000344626.4:c.2849C>T	p.Thr950Ile	p.T950I	ENST00000344626	NM_003072.3	950	aCc/aTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138539	11138539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	65	589	1	ENST00000344626.4:c.3295G>A	p.Val1099Met	p.V1099M	ENST00000344626	NM_003072.3	1099	Gtg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145759	11145759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	139	787	3	ENST00000344626.4:c.4121G>A	p.Arg1374His	p.R1374H	ENST00000344626	NM_003072.3	1374	cGc/cAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272378	15272378	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199620476		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	83	863	1	ENST00000263388.2:c.6061G>A	p.Val2021Met	p.V2021M	ENST00000263388	NM_000435.2	2021	Gtg/Atg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276310	15276310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	60	680	1	ENST00000263388.2:c.5684G>A	p.Arg1895His	p.R1895H	ENST00000263388	NM_000435.2	1895	cGc/cAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281305	15281305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	95	604	0	ENST00000263388.2:c.4951G>A	p.Ala1651Thr	p.A1651T	ENST00000263388	NM_000435.2	1651	Gct/Act																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296155	15296155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	162	828	0	ENST00000263388.2:c.2209G>A	p.Ala737Thr	p.A737T	ENST00000263388	NM_000435.2	737	Gcc/Acc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15297773	15297773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	197	713	0	ENST00000263388.2:c.1867G>A	p.Asp623Asn	p.D623N	ENST00000263388	NM_000435.2	623	Gac/Aac																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349736	15349736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	131	676	0	ENST00000263377.2:c.3838C>T	p.Arg1280Cys	p.R1280C	ENST00000263377	NM_058243.2	1280	Cgt/Tgt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17937713	17937713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	136	485	0	ENST00000458235.1:c.3214G>A	p.Glu1072Lys	p.E1072K	ENST00000458235	NM_000215.3	1072	Gag/Aag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18274154	18274154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	137	626	0	ENST00000222254.8:c.1372C>T	p.Arg458Cys	p.R458C	ENST00000222254	NM_005027.3	458	Cgc/Tgc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257856	19257856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	200	894	1	ENST00000162023.5:c.530C>T	p.Ala177Val	p.A177V	ENST00000162023		177	gCc/gTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210440	36210440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	113	546	0	ENST00000222270.7:c.433C>T	p.Arg145Ter	p.R145*	ENST00000222270	NM_014727.1	145	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212411	36212412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	173	718	0	ENST00000222270.7:c.2162_2163insA	p.His722SerfsTer124	p.H722Sfs*124	ENST00000222270	NM_014727.1	721	cct/ccAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36215906	36215906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	186	689	0	ENST00000222270.7:c.3446G>A	p.Gly1149Asp	p.G1149D	ENST00000222270	NM_014727.1	1149	gGc/gAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216703	36216703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	61	482	2	ENST00000222270.7:c.3869G>A	p.Arg1290His	p.R1290H	ENST00000222270	NM_014727.1	1290	cGc/cAc																																																																														
AXL	558	MSKCC	GRCh37	19	41726691	41726691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	157	691	1	ENST00000301178.4:c.236C>T	p.Ala79Val	p.A79V	ENST00000301178	NM_021913.4	79	gCg/gTg																																																																														
ERF	2077	MSKCC	GRCh37	19	42752649	42752649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	155	586	0	ENST00000222329.4:c.1615G>A	p.Ala539Thr	p.A539T	ENST00000222329	NM_006494.2	539	Gcc/Acc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753836	42753836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	216	870	1	ENST00000222329.4:c.428G>A	p.Arg143His	p.R143H	ENST00000222329	NM_006494.2	143	cGc/cAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794623	42794623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	135	675	2	ENST00000575354.2:c.1703C>T	p.Ala568Val	p.A568V	ENST00000575354	NM_015125.3	568	gCg/gTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794979	42794979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	163	641	1	ENST00000575354.2:c.2059G>A	p.Ala687Thr	p.A687T	ENST00000575354	NM_015125.3	687	Gcc/Acc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905151	50905151	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137953986		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	92	870	1	ENST00000440232.2:c.433G>A	p.Ala145Thr	p.A145T	ENST00000440232	NM_002691.3	145	Gct/Act																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909745	50909745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	204	846	0	ENST00000440232.2:c.1465G>A	p.Val489Met	p.V489M	ENST00000440232	NM_002691.3	489	Gtg/Atg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918798	50918798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	177	852	3	ENST00000440232.2:c.2668G>A	p.Ala890Thr	p.A890T	ENST00000440232	NM_002691.3	890	Gcg/Acg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714687	52714687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	45	651	1	ENST00000322088.6:c.445G>A	p.Gly149Ser	p.G149S	ENST00000322088	NM_014225.5	149	Ggc/Agc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	153	600	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965049	25965049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	109	424	0	ENST00000435504.4:c.4157C>T	p.Ala1386Val	p.A1386V	ENST00000435504		1386	gCg/gTg																																																																														
CENPA	1058	MSKCC	GRCh37	2	27016049	27016049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	112	548	1	ENST00000335756.4:c.325G>A	p.Ala109Thr	p.A109T	ENST00000335756	NM_001809.3	109	Gcc/Acc																																																																														
ALK	238	MSKCC	GRCh37	2	29445273	29445273	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	106	553	0	ENST00000389048.3:c.3452C>T	p.Thr1151Met	p.T1151M	ENST00000389048	NM_004304.4	1151	aCg/aTg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39285891	39285891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	68	392	0	ENST00000402219.2:c.268G>A	p.Ala90Thr	p.A90T	ENST00000402219	NM_005633.3	90	Gcc/Acc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47672741	47672741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	94	474	0	ENST00000233146.2:c.1331G>A	p.Arg444His	p.R444H	ENST00000233146	NM_000251.2	444	cGt/cAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026204	48026204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	72	309	0	ENST00000234420.5:c.1082G>A	p.Arg361His	p.R361H	ENST00000234420	NM_000179.2	361	cGc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030613	48030613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	91	431	2	ENST00000234420.5:c.3227G>A	p.Arg1076His	p.R1076H	ENST00000234420	NM_000179.2	1076	cGc/cAc																																																																														
REL	5966	MSKCC	GRCh37	2	61149023	61149023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	98	338	0	ENST00000295025.8:c.1213G>A	p.Ala405Thr	p.A405T	ENST00000295025	NM_002908.2	405	Gca/Aca																																																																														
REL	5966	MSKCC	GRCh37	2	61149558	61149558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	69	316	0	ENST00000295025.8:c.1748G>A	p.Ser583Asn	p.S583N	ENST00000295025	NM_002908.2	583	aGt/aAt																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96920597	96920597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	88	385	0	ENST00000258439.3:c.383G>A	p.Arg128His	p.R128H	ENST00000258439	NM_001193304.2	128	cGc/cAc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128028933	128028933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	121	555	0	ENST00000285398.2:c.1924C>T	p.Arg642Trp	p.R642W	ENST00000285398	NM_000122.1	642	Cgg/Tgg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098965	178098965	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	43	239	0	ENST00000397062.3:c.80A>C	p.Asp27Ala	p.D27A	ENST00000397062	NM_006164.4	27	gAt/gCt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719556	190719556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	33	162	0	ENST00000441310.2:c.1558C>T	p.Pro520Ser	p.P520S	ENST00000441310	NM_000534.4	520	Cct/Tct																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	42	209	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530055	212530055	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	61	203	0	ENST00000342788.4:c.1864A>G	p.Thr622Ala	p.T622A	ENST00000342788	NM_005235.2	622	Acc/Gcc																																																																														
BARD1	580	MSKCC	GRCh37	2	215645489	215645489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	103	512	1	ENST00000260947.4:c.1109G>A	p.Arg370His	p.R370H	ENST00000260947	NM_000465.2	370	cGt/cAt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225342967	225342967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	77	409	1	ENST00000264414.4:c.2125C>T	p.Arg709Trp	p.R709W	ENST00000264414	NM_003590.4	709	Cgg/Tgg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225370818	225370818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	76	342	1	ENST00000264414.4:c.1061G>A	p.Arg354His	p.R354H	ENST00000264414	NM_003590.4	354	cGc/cAc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371691	225371691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	99	478	0	ENST00000264414.4:c.913C>T	p.Arg305Cys	p.R305C	ENST00000264414	NM_003590.4	305	Cgt/Tgt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662253	227662253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	149	714	0	ENST00000305123.5:c.1202G>A	p.Gly401Asp	p.G401D	ENST00000305123	NM_005544.2	401	gGc/gAc																																																																														
PAK7	0	MSKCC	GRCh37	20	9525054	9525054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	37	383	0	ENST00000353224.5:c.1831G>A	p.Ala611Thr	p.A611T	ENST00000353224	NM_177990.2	611	Gcc/Acc																																																																														
PAK7	0	MSKCC	GRCh37	20	9624936	9624936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	88	316	1	ENST00000353224.5:c.41C>T	p.Pro14Leu	p.P14L	ENST00000353224	NM_177990.2	14	cCg/cTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023920	31023920	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	47	583	0	ENST00000375687.4:c.3405A>C	p.Gln1135His	p.Q1135H	ENST00000375687	NM_015338.5	1135	caA/caC																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374324	31374324	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	126	507	0	ENST00000328111.2:c.323A>G	p.Asn108Ser	p.N108S	ENST00000328111	NM_006892.3	108	aAc/aGc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375211	31375211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147945634		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	177	695	1	ENST00000328111.2:c.608C>T	p.Pro203Leu	p.P203L	ENST00000328111	NM_006892.3	203	cCg/cTg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31388006	31388006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	63	332	0	ENST00000328111.2:c.1807G>A	p.Ala603Thr	p.A603T	ENST00000328111	NM_006892.3	603	Gct/Act																																																																														
SRC	6714	MSKCC	GRCh37	20	36012617	36012617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	78	301	3	ENST00000358208.4:c.61G>A	p.Ala21Thr	p.A21T	ENST00000358208		21	Gcc/Acc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713386	40713386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	141	685	1	ENST00000373198.4:c.4129C>T	p.Arg1377Ter	p.R1377*	ENST00000373198	NM_133170.3	1377	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306640	41306640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	141	654	0	ENST00000373198.4:c.1019T>C	p.Val340Ala	p.V340A	ENST00000373198	NM_133170.3	340	gTc/gCc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54958197	54958197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	74	392	0	ENST00000312783.6:c.410G>A	p.Arg137His	p.R137H	ENST00000312783	NM_198436.1	137	cGc/cAc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62292822	62292822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	74	313	1	ENST00000508582.2:c.274G>A	p.Ala92Thr	p.A92T	ENST00000508582		92	Gct/Act																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62320469	62320469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	137	584	0	ENST00000508582.2:c.1934C>T	p.Ala645Val	p.A645V	ENST00000508582		645	gCg/gTg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62325731	62325731	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201560152		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	122	563	1	ENST00000508582.2:c.3071C>T	p.Thr1024Met	p.T1024M	ENST00000508582		1024	aCg/aTg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42860344	42860344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	68	611	0	ENST00000398585.3:c.533G>A	p.Gly178Asp	p.G178D	ENST00000398585	NM_001135099.1	178	gGc/gAc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44514850	44514850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	114	469	0	ENST00000291552.4:c.397C>T	p.Arg133Cys	p.R133C	ENST00000291552	NM_006758.2	133	Cgt/Tgt																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655272	45655272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	189	699	1	ENST00000407780.3:c.580C>T	p.Arg194Trp	p.R194W	ENST00000407780	NM_001283052.1	194	Cgg/Tgg																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288141	21288141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	93	460	1	ENST00000354336.3:c.386G>A	p.Arg129Gln	p.R129Q	ENST00000354336	NM_005207.3	129	cGg/cAg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121018	29121018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	105	533	2	ENST00000328354.6:c.539G>A	p.Arg180His	p.R180H	ENST00000328354	NM_007194.3	180	cGc/cAc																																																																														
RAC2	5880	MSKCC	GRCh37	22	37627979	37627979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	159	669	1	ENST00000249071.6:c.281G>A	p.Arg94His	p.R94H	ENST00000249071	NM_002872.4	94	cGc/cAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41523587	41523587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	153	489	1	ENST00000263253.7:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000263253	NM_001429.3	335	Cgc/Tgc																																																																														
EP300	2033	MSKCC	GRCh37	22	41526007	41526007	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201341021		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	62	319	0	ENST00000263253.7:c.1282C>T	p.Pro428Ser	p.P428S	ENST00000263253	NM_001429.3	428	Cca/Tca																																																																														
EP300	2033	MSKCC	GRCh37	22	41527619	41527619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	83	366	0	ENST00000263253.7:c.1510C>T	p.Arg504Trp	p.R504W	ENST00000263253	NM_001429.3	504	Cgg/Tgg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458342	12458342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	135	588	1	ENST00000287820.6:c.959C>T	p.Ala320Val	p.A320V	ENST00000287820	NM_015869.4	320	gCt/gTt																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641739	12641739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	132	496	0	ENST00000251849.4:c.902G>A	p.Ser301Asn	p.S301N	ENST00000251849	NM_002880.3	301	aGc/aAc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713667	30713667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	97	478	0	ENST00000359013.4:c.1067G>A	p.Gly356Asp	p.G356D	ENST00000359013	NM_001024847.2	356	gGc/gAc																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180195	38180195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	91	444	0	ENST00000396334.3:c.43G>A	p.Ala15Thr	p.A15T	ENST00000396334	NM_002468.4	15	Gct/Act																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098816	47098816	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	163	643	0	ENST00000409792.3:c.6458A>C	p.Asp2153Ala	p.D2153A	ENST00000409792	NM_014159.6	2153	gAc/gCc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164763	47164763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	60	324	0	ENST00000409792.3:c.1363G>A	p.Ala455Thr	p.A455T	ENST00000409792	NM_014159.6	455	Gca/Aca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165270	47165270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	47	295	0	ENST00000409792.3:c.856A>G	p.Ile286Val	p.I286V	ENST00000409792	NM_014159.6	286	Att/Gtt																																																																														
MST1	4485	MSKCC	GRCh37	3	49723034	49723034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	96	385	0	ENST00000449682.2:c.1382G>A	p.Arg461His	p.R461H	ENST00000449682	NM_020998.3	461	cGc/cAc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932797	49932797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	172	729	0	ENST00000296474.3:c.3074C>T	p.Ala1025Val	p.A1025V	ENST00000296474	NM_002447.2	1025	gCc/gTc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940385	49940385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	98	625	1	ENST00000296474.3:c.658C>T	p.Arg220Cys	p.R220C	ENST00000296474	NM_002447.2	220	Cgt/Tgt																																																																														
MITF	4286	MSKCC	GRCh37	3	70008542	70008542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202020443		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	113	332	0	ENST00000352241.4:c.1132G>A	p.Ala378Thr	p.A378T	ENST00000352241	NM_198159.2	378	Gcc/Acc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528645	89528645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	65	200	0	ENST00000336596.2:c.2945C>T	p.Pro982Leu	p.P982L	ENST00000336596	NM_005233.5	982	cCc/cTc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205019	128205019	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	115	572	0	ENST00000341105.2:c.422A>G	p.Tyr141Cys	p.Y141C	ENST00000341105	NM_032638.4	141	tAc/tGc																																																																														
ATR	545	MSKCC	GRCh37	3	142168414	142168414	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	52	305	0	ENST00000350721.4:c.7792C>T	p.Arg2598Ter	p.R2598*	ENST00000350721	NM_001184.3	2598	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952049	178952049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	76	269	0	ENST00000263967.3:c.3104C>T	p.Ala1035Val	p.A1035V	ENST00000263967	NM_006218.2	1035	gCt/gTt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185183540	185183540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	53	263	0	ENST00000265026.3:c.1394C>T	p.Ala465Val	p.A465V	ENST00000265026	NM_004721.4	465	gCg/gTg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801476	1801476	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200300532		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	129	783	0	ENST00000260795.2:c.382G>A	p.Ala128Thr	p.A128T	ENST00000260795		128	Gct/Act																																																																														
WHSC1	0	MSKCC	GRCh37	4	1959734	1959734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	81	263	0	ENST00000382891.5:c.2956C>T	p.Arg986Cys	p.R986C	ENST00000382891	NM_133335.3	986	Cgc/Tgc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133523	55133523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142492533		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	114	452	1	ENST00000257290.5:c.827C>T	p.Thr276Met	p.T276M	ENST00000257290	NM_006206.4	276	aCg/aTg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133767	55133767	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	100	413	0	ENST00000257290.5:c.980T>C	p.Val327Ala	p.V327A	ENST00000257290	NM_006206.4	327	gTc/gCc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55136805	55136805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41279521		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	42	284	0	ENST00000257290.5:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000257290	NM_006206.4	376	cGa/cAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55597574	55597574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	58	333	0	ENST00000288135.5:c.2222C>A	p.Ser741Tyr	p.S741Y	ENST00000288135	NM_000222.2	741	tCt/tAt																																																																														
KDR	3791	MSKCC	GRCh37	4	55953773	55953773	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	80	378	0	ENST00000263923.4:c.3662+1G>A		p.X1221_splice	ENST00000263923	NM_002253.2	1221																																																																															
KDR	3791	MSKCC	GRCh37	4	55979612	55979612	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	97	441	0	ENST00000263923.4:c.835A>C	p.Thr279Pro	p.T279P	ENST00000263923	NM_002253.2	279	Acc/Ccc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230823	66230824	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	46	359	0	ENST00000273854.3:c.2147dup	p.Gln717AlafsTer8	p.Q717Afs*8	ENST00000273854	NM_004439.5	716	aag/aaAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66242734	66242734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	75	297	0	ENST00000273854.3:c.1838C>T	p.Ala613Val	p.A613V	ENST00000273854	NM_004439.5	613	gCc/gTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280056	66280056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	16	241	0	ENST00000273854.3:c.1633G>T	p.Ala545Ser	p.A545S	ENST00000273854	NM_004439.5	545	Gca/Tca																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467472	66467472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	22	255	1	ENST00000273854.3:c.797C>A	p.Ser266Tyr	p.S266Y	ENST00000273854	NM_004439.5	266	tCt/tAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106155305	106155305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	68	343	0	ENST00000380013.4:c.206G>A	p.Ser69Asn	p.S69N	ENST00000380013	NM_001127208.2	69	aGc/aAc																																																																														
TET2	54790	MSKCC	GRCh37	4	106164916	106164916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	93	308	1	ENST00000380013.4:c.3784C>T	p.Arg1262Trp	p.R1262W	ENST00000380013	NM_001127208.2	1262	Cgg/Tgg																																																																														
TET2	54790	MSKCC	GRCh37	4	106196249	106196249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	38	211	0	ENST00000380013.4:c.4582C>T	p.Pro1528Ser	p.P1528S	ENST00000380013	NM_001127208.2	1528	Ccc/Tcc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143043320	143043320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	81	334	0	ENST00000262992.4:c.2096C>T	p.Ala699Val	p.A699V	ENST00000262992	NM_001101669.1	699	gCc/gTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332496	153332496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138477494		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	78	352	0	ENST00000281708.4:c.460G>A	p.Val154Ile	p.V154I	ENST00000281708	NM_033632.3	154	Gtt/Att																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539527	187539527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	67	323	0	ENST00000441802.2:c.8213T>C	p.Val2738Ala	p.V2738A	ENST00000441802	NM_005245.3	2738	gTc/gCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541826	187541826	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	80	373	0	ENST00000441802.2:c.5914A>T	p.Ser1972Cys	p.S1972C	ENST00000441802	NM_005245.3	1972	Agc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541861	187541861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	38	377	0	ENST00000441802.2:c.5879C>T	p.Ala1960Val	p.A1960V	ENST00000441802	NM_005245.3	1960	gCc/gTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549695	187549695	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	78	364	0	ENST00000441802.2:c.4546A>G	p.Thr1516Ala	p.T1516A	ENST00000441802	NM_005245.3	1516	Act/Gct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630921	187630921	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	46	427	0	ENST00000441802.2:c.61A>G	p.Ser21Gly	p.S21G	ENST00000441802	NM_005245.3	21	Agt/Ggt																																																																														
TERT	7015	MSKCC	GRCh37	5	1268689	1268689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	179	777	0	ENST00000310581.5:c.2528G>A	p.Ser843Asn	p.S843N	ENST00000310581	NM_198253.2	843	aGc/aAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1278755	1278755	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	121	538	0	ENST00000310581.5:c.2286+1G>A		p.X762_splice	ENST00000310581	NM_198253.2	762																																																																															
TERT	7015	MSKCC	GRCh37	5	1278818	1278818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	169	680	0	ENST00000310581.5:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000310581	NM_198253.2	742	Cgt/Tgt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526339	31526339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	218	960	0	ENST00000344624.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000344624		234	cGa/cAa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874605	35874605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	103	422	0	ENST00000303115.3:c.761C>T	p.Ala254Val	p.A254V	ENST00000303115	NM_002185.3	254	gCt/gTt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56152572	56152572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	63	280	0	ENST00000399503.3:c.628C>T	p.Pro210Ser	p.P210S	ENST00000399503	NM_005921.1	210	Cct/Tct																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564738	86564738	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	166	701	0	ENST00000274376.6:c.470A>C	p.Asp157Ala	p.D157A	ENST00000274376	NM_002890.2	157	gAc/gCc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645166	86645166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	25	239	0	ENST00000274376.6:c.1238G>A	p.Gly413Asp	p.G413D	ENST00000274376	NM_002890.2	413	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112173495	112173495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147655929		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	40	268	0	ENST00000257430.4:c.2204C>T	p.Ala735Val	p.A735V	ENST00000257430	NM_000038.5	735	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175814	112175814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	29	225	0	ENST00000257430.4:c.4523C>T	p.Ala1508Val	p.A1508V	ENST00000257430	NM_000038.5	1508	gCt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112176605	112176605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	43	249	0	ENST00000257430.4:c.5314C>T	p.Pro1772Ser	p.P1772S	ENST00000257430	NM_000038.5	1772	Cca/Tca																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915588	131915588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	47	190	0	ENST00000265335.6:c.586C>T	p.Arg196Cys	p.R196C	ENST00000265335		196	Cgt/Tgt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459783	149459783	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147811334		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	144	603	0	ENST00000286301.3:c.424C>T	p.Arg142Cys	p.R142C	ENST00000286301	NM_005211.3	142	Cgt/Tgt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149511596	149511596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	113	593	0	ENST00000261799.4:c.1189C>T	p.Arg397Trp	p.R397W	ENST00000261799	NM_002609.3	397	Cgg/Tgg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176516607	176516607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	181	702	0	ENST00000292408.4:c.4C>T	p.Arg2Trp	p.R2W	ENST00000292408	NM_213647.1	2	Cgg/Tgg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638458	176638458	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	179	649	0	ENST00000439151.2:c.3058A>G	p.Asn1020Asp	p.N1020D	ENST00000439151	NM_022455.4	1020	Aac/Gac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707731	176707731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	121	435	1	ENST00000439151.2:c.5788C>T	p.Arg1930Cys	p.R1930C	ENST00000439151	NM_022455.4	1930	Cgc/Tgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048177	180048177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	178	724	1	ENST00000261937.6:c.2096G>A	p.Cys699Tyr	p.C699Y	ENST00000261937	NM_182925.4	699	tGc/tAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180050993	180050993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	173	772	4	ENST00000261937.6:c.1490C>T	p.Ala497Val	p.A497V	ENST00000261937	NM_182925.4	497	gCc/gTc																																																																														
IRF4	3662	MSKCC	GRCh37	6	394981	394981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	128	465	0	ENST00000380956.4:c.377G>A	p.Arg126Lys	p.R126K	ENST00000380956	NM_001195286.1	126	aGg/aAg																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481454	20481455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	57	244	0	ENST00000346618.3:c.529dup	p.Thr177AsnfsTer4	p.T177Nfs*4	ENST00000346618	NM_001949.4	175	gaa/gAaa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481461	20481461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	38	262	0	ENST00000346618.3:c.530C>T	p.Thr177Met	p.T177M	ENST00000346618	NM_001949.4	177	aCg/aTg																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225435	26225435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	28	245	0	ENST00000360408.1:c.53G>A	p.Arg18His	p.R18H	ENST00000360408	NM_003532.2	18	cGc/cAc																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27777973	27777973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	75	372	0	ENST00000369163.2:c.122G>A	p.Arg41His	p.R41H	ENST00000369163	NM_003536.2	41	cGc/cAc																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858200	27858200	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	98	407	0	ENST00000359303.2:c.371A>G	p.Asp124Gly	p.D124G	ENST00000359303	NM_003535.2	124	gAc/gGc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681477	30681477	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28986464		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	71	352	0	ENST00000376406.3:c.535C>T	p.Arg179Cys	p.R179C	ENST00000376406	NM_014641.2	179	Cgt/Tgt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	76	415	0	ENST00000374542.5:c.767G>A	p.Arg256His	p.R256H	ENST00000374542	NM_001141970.1	256	cGc/cAc																																																																														
PIM1	5292	MSKCC	GRCh37	6	37139232	37139232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	89	467	0	ENST00000373509.5:c.572C>T	p.Ala191Val	p.A191V	ENST00000373509	NM_002648.3	191	gCg/gTg																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43742099	43742099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	176	653	0	ENST00000523873.1:c.88G>A	p.Ala30Thr	p.A30T	ENST00000523873		30	Gca/Aca																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43745233	43745233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	124	559	2	ENST00000523873.1:c.146G>A	p.Arg49His	p.R49H	ENST00000523873		49	cGc/cAc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066471	94066471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	44	244	0	ENST00000369303.4:c.1288C>T	p.Leu430Phe	p.L430F	ENST00000369303	NM_004440.3	430	Ctc/Ttc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553591	106553591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	85	345	0	ENST00000369096.4:c.1556C>T	p.Ala519Val	p.A519V	ENST00000369096	NM_001198.3	519	gCg/gTg																																																																														
SESN1	27244	MSKCC	GRCh37	6	109315715	109315715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	98	533	0	ENST00000436639.2:c.1070C>T	p.Ala357Val	p.A357V	ENST00000436639	NM_014454.2	357	gCt/gTt																																																																														
FYN	2534	MSKCC	GRCh37	6	112017578	112017578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	114	455	0	ENST00000368678.4:c.935C>T	p.Ala312Val	p.A312V	ENST00000368678		312	gCg/gTg																																																																														
FYN	2534	MSKCC	GRCh37	6	112025223	112025223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	108	420	1	ENST00000368678.4:c.526C>T	p.Arg176Cys	p.R176C	ENST00000368678		176	Cgc/Tgc																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519461	137519461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	53	240	1	ENST00000367739.4:c.1177G>A	p.Ala393Thr	p.A393T	ENST00000367739	NM_000416.2	393	Gct/Act																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196958	138196958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	42	208	1	ENST00000237289.4:c.620T>C	p.Ile207Thr	p.I207T	ENST00000237289	NM_001270507.1	207	aTc/aCc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199922	138199922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	91	389	0	ENST00000237289.4:c.1340C>T	p.Ala447Val	p.A447V	ENST00000237289	NM_001270507.1	447	gCg/gTg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004222	150004222	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	47	206	0	ENST00000253339.5:c.2003T>C	p.Met668Thr	p.M668T	ENST00000253339		668	aTg/aCg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954964	2954964	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	185	671	0	ENST00000396946.4:c.2746A>G	p.Asn916Asp	p.N916D	ENST00000396946	NM_032415.4	916	Aac/Gac																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026514	6026514	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	142	556	0	ENST00000265849.7:c.1882C>T	p.Arg628Ter	p.R628*	ENST00000265849	NM_000535.5	628	Cga/Tga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729639	41729639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	111	465	0	ENST00000242208.4:c.890C>T	p.Ala297Val	p.A297V	ENST00000242208	NM_002192.2	297	gCc/gTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739717	41739717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	153	685	0	ENST00000242208.4:c.256G>A	p.Ala86Thr	p.A86T	ENST00000242208	NM_002192.2	86	Gcg/Acg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444275	50444275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	65	282	0	ENST00000331340.3:c.205C>T	p.Arg69Cys	p.R69C	ENST00000331340	NM_006060.4	69	Cgt/Tgt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468020	50468020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	111	520	3	ENST00000331340.3:c.1255G>A	p.Ala419Thr	p.A419T	ENST00000331340	NM_006060.4	419	Gcc/Acc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55240686	55240686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	220	815	0	ENST00000275493.2:c.1930C>T	p.Pro644Ser	p.P644S	ENST00000275493	NM_005228.3	644	Ccg/Tcg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55240786	55240786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	189	837	3	ENST00000275493.2:c.2030G>A	p.Arg677His	p.R677H	ENST00000275493	NM_005228.3	677	cGc/cAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508557	106508557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	67	324	1	ENST00000359195.3:c.551G>A	p.Arg184His	p.R184H	ENST00000359195	NM_002649.2	184	cGc/cAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509082	106509082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144565710		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	155	564	0	ENST00000359195.3:c.1076G>A	p.Arg359His	p.R359H	ENST00000359195	NM_002649.2	359	cGc/cAc																																																																														
MET	4233	MSKCC	GRCh37	7	116381005	116381005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	123	479	0	ENST00000397752.3:c.1627G>A	p.Asp543Asn	p.D543N	ENST00000397752	NM_000245.2	543	Gac/Aac																																																																														
SMO	6608	MSKCC	GRCh37	7	128850915	128850915	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	141	572	0	ENST00000249373.3:c.1762T>C	p.Ser588Pro	p.S588P	ENST00000249373	NM_005631.4	588	Tcc/Ccc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852114	128852114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200751953		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	198	842	3	ENST00000249373.3:c.2186C>T	p.Ala729Val	p.A729V	ENST00000249373	NM_005631.4	729	gCg/gTg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148512114	148512114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	34	378	0	ENST00000320356.2:c.1564G>A	p.Val522Ile	p.V522I	ENST00000320356	NM_004456.4	522	Gtt/Att																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151846197	151846197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	75	415	0	ENST00000262189.6:c.12815C>T	p.Thr4272Met	p.T4272M	ENST00000262189	NM_170606.2	4272	aCg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151853002	151853002	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	35	204	0	ENST00000262189.6:c.11953G>T	p.Glu3985Ter	p.E3985*	ENST00000262189	NM_170606.2	3985	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151856027	151856027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	53	417	1	ENST00000262189.6:c.11591G>A	p.Arg3864His	p.R3864H	ENST00000262189	NM_170606.2	3864	cGc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875037	151875037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	40	165	0	ENST00000262189.6:c.7501C>T	p.Pro2501Ser	p.P2501S	ENST00000262189	NM_170606.2	2501	Cct/Tct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949769	151949769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	57	319	0	ENST00000262189.6:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000262189	NM_170606.2	444	cGg/cAg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187179	38187179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	64	663	0	ENST00000317025.8:c.1298C>A	p.Thr433Asn	p.T433N	ENST00000317025	NM_023034.1	433	aCc/aAc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38283754	38283754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	123	528	1	ENST00000425967.3:c.724G>A	p.Ala242Thr	p.A242T	ENST00000425967	NM_001174067.1	242	Gcc/Acc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372134	55372134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	65	286	3	ENST00000297316.4:c.824G>A	p.Gly275Asp	p.G275D	ENST00000297316	NM_022454.3	275	gGc/gAc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372389	55372389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	201	750	0	ENST00000297316.4:c.1079G>A	p.Arg360His	p.R360H	ENST00000297316	NM_022454.3	360	cGc/cAc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981768	70981768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	221	798	0	ENST00000276594.2:c.328G>A	p.Glu110Lys	p.E110K	ENST00000276594	NM_024504.3	110	Gaa/Aaa																																																																														
NBN	4683	MSKCC	GRCh37	8	90958511	90958511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	81	289	0	ENST00000265433.3:c.1927C>A	p.Leu643Ile	p.L643I	ENST00000265433	NM_002485.4	643	Ctt/Att																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859836	117859836	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	69	207	0	ENST00000297338.2:c.1799T>C	p.Phe600Ser	p.F600S	ENST00000297338	NM_006265.2	600	tTc/tCc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868981	117868981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	63	259	0	ENST00000297338.2:c.718G>A	p.Gly240Ser	p.G240S	ENST00000297338	NM_006265.2	240	Ggt/Agt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741686	145741686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34103564		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	120	719	0	ENST00000428558.2:c.817G>A	p.Ala273Thr	p.A273T	ENST00000428558	NM_004260.3	273	Gca/Aca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449745	8449745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	38	520	0	ENST00000356435.5:c.3968G>A	p.Arg1323His	p.R1323H	ENST00000356435		1323	cGc/cAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465587	8465587	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	108	445	0	ENST00000356435.5:c.3593T>C	p.Val1198Ala	p.V1198A	ENST00000356435		1198	gTc/gCc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507374	8507374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	27	268	0	ENST00000356435.5:c.1604C>A	p.Ser535Tyr	p.S535Y	ENST00000356435		535	tCt/tAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518016	8518016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	60	321	0	ENST00000356435.5:c.1375C>T	p.Pro459Ser	p.P459S	ENST00000356435		459	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518112	8518112	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	79	386	0	ENST00000356435.5:c.1279C>T	p.Arg427Ter	p.R427*	ENST00000356435		427	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528596	8528596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	34	323	0	ENST00000356435.5:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000356435		179	cGa/cAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27203039	27203039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	81	509	0	ENST00000380036.4:c.2131G>A	p.Asp711Asn	p.D711N	ENST00000380036	NM_000459.3	711	Gac/Aac																																																																														
SYK	6850	MSKCC	GRCh37	9	93624558	93624558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	128	497	1	ENST00000375746.1:c.649C>T	p.Arg217Cys	p.R217C	ENST00000375746	NM_001174167.1	217	Cgc/Tgc																																																																														
SYK	6850	MSKCC	GRCh37	9	93636969	93636969	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200994798		P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	74	333	0	ENST00000375746.1:c.1019C>A	p.Ala340Asp	p.A340D	ENST00000375746	NM_001174167.1	340	gCc/gAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239974	98239974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	113	358	0	ENST00000331920.6:c.1358C>A	p.Ala453Asp	p.A453D	ENST00000331920	NM_000264.3	453	gCc/gAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98247997	98247997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	68	397	0	ENST00000331920.6:c.554C>T	p.Ala185Val	p.A185V	ENST00000331920	NM_000264.3	185	gCc/gTc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908828	101908828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	38	378	1	ENST00000374994.4:c.1192C>T	p.Arg398Cys	p.R398C	ENST00000374994	NM_004612.2	398	Cgt/Tgt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908850	101908850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	64	427	0	ENST00000374994.4:c.1214G>A	p.Gly405Asp	p.G405D	ENST00000374994	NM_004612.2	405	gGc/gAc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249413	110249413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	297	897	0	ENST00000374672.4:c.1160C>T	p.Ser387Leu	p.S387L	ENST00000374672	NM_004235.4	387	tCg/tTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760790	133760790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	146	658	0	ENST00000318560.5:c.3113C>T	p.Ala1038Val	p.A1038V	ENST00000318560	NM_005157.4	1038	gCg/gTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395186	139395186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	199	775	1	ENST00000277541.6:c.5752G>A	p.Ala1918Thr	p.A1918T	ENST00000277541	NM_017617.3	1918	Gcc/Acc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396884	139396884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	144	517	1	ENST00000277541.6:c.5224G>A	p.Ala1742Thr	p.A1742T	ENST00000277541	NM_017617.3	1742	Gcc/Acc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400321	139400321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	135	576	0	ENST00000277541.6:c.4027G>A	p.Ala1343Thr	p.A1343T	ENST00000277541	NM_017617.3	1343	Gcc/Acc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139403498	139403498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	208	749	0	ENST00000277541.6:c.2995G>A	p.Val999Met	p.V999M	ENST00000277541	NM_017617.3	999	Gtg/Atg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412365	139412365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	129	602	0	ENST00000277541.6:c.1280G>A	p.Gly427Asp	p.G427D	ENST00000277541	NM_017617.3	427	gGc/gAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412375	139412375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	115	573	1	ENST00000277541.6:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000277541	NM_017617.3	424	Gag/Aag																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139563109	139563109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	144	587	2	ENST00000308874.7:c.181G>A	p.Ala61Thr	p.A61T	ENST00000308874		61	Gcc/Acc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15838375	15838375	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	105	342	0	ENST00000307771.7:c.873G>A	p.Trp291Ter	p.W291*	ENST00000307771	NM_005089.3	291	tgG/tgA																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841306	15841306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	58	399	0	ENST00000307771.7:c.1390C>T	p.Arg464Cys	p.R464C	ENST00000307771	NM_005089.3	464	Cgt/Tgt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916463	39916463	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	134	665	0	ENST00000378444.4:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000378444	NM_001123385.1	1514	Cga/Tga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916493	39916493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	59	739	0	ENST00000378444.4:c.4510G>A	p.Ala1504Thr	p.A1504T	ENST00000378444	NM_001123385.1	1504	Gct/Act																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933871	39933871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	193	745	0	ENST00000378444.4:c.728G>A	p.Arg243His	p.R243H	ENST00000378444	NM_001123385.1	243	cGc/cAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922973	44922973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	147	508	3	ENST00000377967.4:c.1834C>T	p.Arg612Ter	p.R612*	ENST00000377967	NM_021140.2	612	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47035918	47035918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	179	697	0	ENST00000329236.7:c.365G>A	p.Gly122Asp	p.G122D	ENST00000329236	NM_001204466.1	122	gGc/gAc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652476	48652476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	64	742	0	ENST00000376670.3:c.1147C>T	p.Pro383Ser	p.P383S	ENST00000376670	NM_002049.3	383	Cct/Tct																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222460	53222460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	173	792	1	ENST00000375401.3:c.4372C>T	p.Arg1458Trp	p.R1458W	ENST00000375401	NM_004187.3	1458	Cgg/Tgg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226016	53226016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	199	829	1	ENST00000375401.3:c.2833G>A	p.Gly945Ser	p.G945S	ENST00000375401	NM_004187.3	945	Ggc/Agc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53230913	53230913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	150	627	1	ENST00000375401.3:c.1880G>A	p.Arg627His	p.R627H	ENST00000375401	NM_004187.3	627	cGc/cAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410985	63410985	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	50	603	0	ENST00000330258.3:c.2182T>C	p.Phe728Leu	p.F728L	ENST00000330258	NM_152424.3	728	Ttt/Ctt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411777	63411777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	174	811	1	ENST00000330258.3:c.1390G>A	p.Ala464Thr	p.A464T	ENST00000330258	NM_152424.3	464	Gcc/Acc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412185	63412185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	162	794	0	ENST00000330258.3:c.982T>C	p.Cys328Arg	p.C328R	ENST00000330258	NM_152424.3	328	Tgt/Cgt																																																																														
MED12	9968	MSKCC	GRCh37	X	70347241	70347241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	142	562	0	ENST00000374080.3:c.2905C>T	p.Arg969Cys	p.R969C	ENST00000374080		969	Cgc/Tgc																																																																														
MED12	9968	MSKCC	GRCh37	X	70348542	70348542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	172	496	0	ENST00000374080.3:c.3449C>T	p.Ala1150Val	p.A1150V	ENST00000374080		1150	gCt/gTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70349009	70349009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	61	628	3	ENST00000374080.3:c.3521G>A	p.Arg1174His	p.R1174H	ENST00000374080		1174	cGc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937794	76937794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	39	450	0	ENST00000373344.5:c.2954G>A	p.Ser985Asn	p.S985N	ENST00000373344	NM_000489.3	985	aGc/aAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938049	76938049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	84	495	0	ENST00000373344.5:c.2699C>T	p.Thr900Ile	p.T900I	ENST00000373344	NM_000489.3	900	aCc/aTc																																																																														
TEK	7010	MSKCC	GRCh37	9	27183462	27183462	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	72	313	0	ENST00000380036.4:c.1036C>T	p.Gln346Ter	p.Q346*	ENST00000380036	NM_000459.3	346	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	106	419	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0042412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	165	486	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391168	89391168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	633	405	0	ENST00000336596.2:c.1234G>A	p.Val412Ile	p.V412I	ENST00000336596	NM_005233.5	412	Gtt/Att																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244787	46244787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	102	470	0	ENST00000334344.6:c.2881C>T	p.Gln961Ter	p.Q961*	ENST00000334344	NM_152641.2	961	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259169	89259169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	91	267	0	ENST00000336596.2:c.313G>C	p.Asp105His	p.D105H	ENST00000336596	NM_005233.5	105	Gac/Cac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0042412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	2692	483	2	ENST00000269571.5:c.2305G>A	p.Asp769Asn	p.D769N	ENST00000269571		769	Gac/Aac																																																																														
ARAF	369	MSKCC	GRCh37	X	47422455	47422455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	74	569	0	ENST00000377045.4:c.89G>A	p.Arg30His	p.R30H	ENST00000377045	NM_001654.4	30	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094447	27094447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	155	522	0	ENST00000324856.7:c.3155A>G	p.Tyr1052Cys	p.Y1052C	ENST00000324856	NM_006015.4	1052	tAt/tGt																																																																														
RET	5979	MSKCC	GRCh37	10	43610036	43610036	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	74	735	2	ENST00000355710.3:c.1988T>C	p.Phe663Ser	p.F663S	ENST00000355710	NM_020975.4	663	tTt/tCt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991581	72991581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	200	686	0	ENST00000268489.5:c.2464C>G	p.His822Asp	p.H822D	ENST00000268489	NM_006885.3	822	Cac/Gac																																																																														
CALR	811	MSKCC	GRCh37	19	13050363	13050363	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	159	514	0	ENST00000316448.5:c.315T>G	p.Cys105Trp	p.C105W	ENST00000316448	NM_004343.3	105	tgT/tgG																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145736924	145736924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	218	724	0	ENST00000428558.2:c.3517C>T	p.Pro1173Ser	p.P1173S	ENST00000428558	NM_004260.3	1173	Ccg/Tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	20	917	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868185	37868185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	43	843	0	ENST00000269571.5:c.906C>G	p.Asn302Lys	p.N302K	ENST00000269571		302	aaC/aaG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	71	368	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	28	262	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	69	388	1	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	54	278	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	226	1041	0	ENST00000269305.4:c.440T>A	p.Val147Asp	p.V147D	ENST00000269305	NM_001126112.2	147	gTt/gAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535355	66535355	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	63	627	0	ENST00000273854.3:c.106C>T	p.Arg36Ter	p.R36*	ENST00000273854	NM_004439.5	36	Cga/Tga																																																																														
UPF1	5976	MSKCC	GRCh37	19	18958556	18958556	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	61	586	0	ENST00000262803.5:c.375C>A	p.Tyr125Ter	p.Y125*	ENST00000262803	NM_002911.3	125	taC/taA																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149452958	149452958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	717	606	1	ENST00000286301.3:c.988G>A	p.Gly330Ser	p.G330S	ENST00000286301	NM_005211.3	330	Ggc/Agc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002816	69002816	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0042518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	21	243	0	ENST00000288368.4:c.2116A>C	p.Thr706Pro	p.T706P	ENST00000288368	NM_024870.2	706	Act/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	457	589	0	ENST00000269305.4:c.712T>G	p.Cys238Gly	p.C238G	ENST00000269305	NM_001126112.2	238	Tgt/Ggt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAGCAA	-			P-0042519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	112	256	0	ENST00000346085.5:c.369_392del	p.Gln124_Gln131del	p.Q124_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAA/-																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031900	26031900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	33	221	0	ENST00000244661.2:c.389G>A	p.Arg130His	p.R130H	ENST00000244661	NM_003537.3	130	cGc/cAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42797119	42797119	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1460	103	949	1	ENST00000575354.2:c.3481A>T	p.Thr1161Ser	p.T1161S	ENST00000575354	NM_015125.3	1161	Acc/Tcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259514	55259515	+	missense_variant	Missense_Mutation	DNP	CT	CT	AG			P-0042521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	154	576	1	ENST00000275493.2:c.2572_2573inv	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	CTg/AGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039614	47039615	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0042521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	100	635	0	ENST00000329236.7:c.832_833delinsTT	p.Ala278Leu	p.A278L	ENST00000329236	NM_001204466.1	278	GCa/TTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	71	874	1	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	96	780	4	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346884	73346884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	24	349	0	ENST00000377767.4:c.1333del	p.Ser445HisfsTer20	p.S445Hfs*20	ENST00000377767	NM_014953.3	445	Tca/ca																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742463	17742463	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	65	885	0	ENST00000250003.3:c.650delC	p.Pro217ArgfsTer33	p.P217Rfs*33	ENST00000250003	NM_002478.4	215	ggC/gg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	43	491	2	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	36	389	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	84	1035	4	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	32	555	3	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099080	157099080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	27	264	0	ENST00000346085.5:c.17G>C	p.Gly6Ala	p.G6A	ENST00000346085	NM_020732.3	6	gGc/gCc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59926603	59926603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	27	581	0	ENST00000259008.2:c.394del	p.Thr132ProfsTer25	p.T132Pfs*25	ENST00000259008	NM_032043.2	132	Acc/cc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	85	978	1	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	82	1110	5	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	90	944	0	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300836	137300836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	93	1122	1	ENST00000481739.1:c.481C>T	p.Arg161Trp	p.R161W	ENST00000481739	NM_002957.4	161	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100129	27100129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	67	972	1	ENST00000324856.7:c.3925C>T	p.Leu1309Phe	p.L1309F	ENST00000324856	NM_006015.4	1309	Ctc/Ttc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52661290	52661290	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	34	503	1	ENST00000394830.3:c.1540del	p.Ser514ValfsTer5	p.S514Vfs*5	ENST00000394830	NM_018313.4	514	Agt/gt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	33	601	0				ENST00000310581	NM_198253.2																																																																																
BCOR	54880	MSKCC	GRCh37	X	39933839	39933839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	99	523	1	ENST00000378444.4:c.760G>A	p.Gly254Ser	p.G254S	ENST00000378444	NM_001123385.1	254	Ggt/Agt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090446	37090446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	70	675	1	ENST00000231790.2:c.2041G>A	p.Ala681Thr	p.A681T	ENST00000231790	NM_000249.3	681	Gct/Act																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265573	198265573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	63	709	0	ENST00000335508.6:c.2584G>A	p.Glu862Lys	p.E862K	ENST00000335508	NM_012433.2	862	Gaa/Aaa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65305286	65305286	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	32	617	0	ENST00000342505.4:c.2842G>A	p.Gly948Arg	p.G948R	ENST00000342505	NM_002227.2	948	Gga/Aga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981862	201981862	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	87	1198	0	ENST00000359651.3:c.573del	p.Gly192AlafsTer62	p.G192Afs*62	ENST00000359651		191	ccT/cc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118366603	118366603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	49	524	0	ENST00000534358.1:c.5555del	p.Leu1852Ter	p.L1852*	ENST00000534358	NM_005933.3	1851	aTt/at																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443641	49443641	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1064794007		P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	86	945	2	ENST00000301067.7:c.3730del	p.Val1244SerfsTer86	p.V1244Sfs*86	ENST00000301067	NM_003482.3	1244	Gtc/tc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576217	88576217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	72	763	1	ENST00000360948.2:c.1456C>T	p.His486Tyr	p.H486Y	ENST00000360948	NM_001012338.2	486	Cac/Tac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830780	3830780	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	52	671	0	ENST00000262367.5:c.1776G>A	p.Trp592Ter	p.W592*	ENST00000262367	NM_004380.2	592	tgG/tgA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822005	72822005	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	46	520	0	ENST00000268489.5:c.10170del	p.Val3391CysfsTer94	p.V3391Cfs*94	ENST00000268489	NM_006885.3	3390	aaA/aa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346751	89346751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	55	772	0	ENST00000301030.4:c.6199A>G	p.Ser2067Gly	p.S2067G	ENST00000301030	NM_001256183.1	2067	Agc/Ggc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128051247	128051247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	72	917	0	ENST00000285398.2:c.76G>A	p.Glu26Lys	p.E26K	ENST00000285398	NM_000122.1	26	Gaa/Aaa																																																																														
AURKA	6790	MSKCC	GRCh37	20	54945338	54945338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	48	601	0	ENST00000312783.6:c.1088T>C	p.Leu363Pro	p.L363P	ENST00000312783	NM_198436.1	363	cTg/cCg																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22142995	22142995	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	42	581	0	ENST00000215832.6:c.712A>G	p.Asn238Asp	p.N238D	ENST00000215832	NM_002745.4	238	Aac/Gac																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31406984	31406984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	76	890	0	ENST00000344624.3:c.3923G>A	p.Arg1308Lys	p.R1308K	ENST00000344624		1308	aGa/aAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707830	176707830	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	22	435	0	ENST00000439151.2:c.5891del	p.Lys1964ArgfsTer5	p.K1964Rfs*5	ENST00000439151	NM_022455.4	1963	Aaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	451	683	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61197647	61197647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	697	511	0	ENST00000301761.2:c.29C>T	p.Ser10Leu	p.S10L	ENST00000301761	NM_017841.2	10	tCg/tTg																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944956	31944956	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	199	699	0	ENST00000340398.3:c.145C>T	p.Arg49Ter	p.R49*	ENST00000340398	NM_001013699.2	49	Cga/Tga																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699300	117699300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	177	457	0	ENST00000369458.3:c.341C>T	p.Ser114Phe	p.S114F	ENST00000369458	NM_024626.3	114	tCt/tTt																																																																														
CDH1	999	MSKCC	GRCh37	16	68867218	68867218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	193	552	0	ENST00000261769.5:c.2465C>T	p.Pro822Leu	p.P822L	ENST00000261769	NM_004360.3	822	cCc/cTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41523578	41523578	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	215	691	0	ENST00000263253.7:c.995del	p.Pro332GlnfsTer30	p.P332Qfs*30	ENST00000263253	NM_001429.3	332	Cca/ca																																																																														
PREX2	80243	MSKCC	GRCh37	8	69039640	69039640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	166	343	0	ENST00000288368.4:c.3752T>C	p.Leu1251Pro	p.L1251P	ENST00000288368	NM_024870.2	1251	cTt/cCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	256	577	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874547	155874547	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	73	759	3	ENST00000368323.3:c.212T>A	p.Leu71Gln	p.L71Q	ENST00000368323	NM_006912.5	71	cTg/cAg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15365029	15365029	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	101	895	0	ENST00000263377.2:c.2092T>G	p.Phe698Val	p.F698V	ENST00000263377	NM_058243.2	698	Ttc/Gtc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702341	47702341	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	40	551	0	ENST00000233146.2:c.1937A>T	p.Asp646Val	p.D646V	ENST00000233146	NM_000251.2	646	gAt/gTt																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119624701	119624701	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	42	423	0	ENST00000316626.5:c.716-2A>T		p.X239_splice	ENST00000316626		239																																																																															
KIT	3815	MSKCC	GRCh37	4	55564461	55564466	+	inframe_deletion	In_Frame_Del	DEL	CTTTTC	CTTTTC	-			P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	58	548	0	ENST00000288135.5:c.352_357del	p.Phe118_Leu119del	p.F118_L119del	ENST00000288135	NM_000222.2	117	CTTTTC/-																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047932	180047932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1504	82	1167	0	ENST00000261937.6:c.2243G>A	p.Cys748Tyr	p.C748Y	ENST00000261937	NM_182925.4	748	tGc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0042831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	853	1327	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849121	156849121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	213	1264	0	ENST00000524377.1:c.2013G>C	p.Met671Ile	p.M671I	ENST00000524377	NM_002529.3	671	atG/atC																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246078920	246078920	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	358	721	0	ENST00000388985.4:c.725T>C	p.Met242Thr	p.M242T	ENST00000388985		242	aTg/aCg																																																																														
CBL	867	MSKCC	GRCh37	11	119170465	119170484	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTCTCCTGCCCATGTAGC	TCTTCTCCTGCCCATGTAGC	-			P-0042831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	195	505	0	ENST00000264033.4:c.2696_2715del	p.Ser899TyrfsTer15	p.S899Yfs*15	ENST00000264033	NM_005188.3	899	TCTTCTCCTGCCCATGTAGCt/t																																																																														
KDR	3791	MSKCC	GRCh37	4	55958789	55958789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	47	709	1	ENST00000263923.4:c.3064C>T	p.Arg1022Ter	p.R1022*	ENST00000263923	NM_002253.2	1022	Cga/Tga																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199864	138199864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	51	643	0	ENST00000237289.4:c.1282G>C	p.Glu428Gln	p.E428Q	ENST00000237289	NM_001270507.1	428	Gag/Cag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482425	56482425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	68	805	0	ENST00000267101.3:c.973G>C	p.Gly325Arg	p.G325R	ENST00000267101	NM_001982.3	325	Gga/Cga																																																																														
AKT3	10000	MSKCC	GRCh37	1	243809318	243809318	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	40	480	0	ENST00000263826.5:c.306C>G	p.Ile102Met	p.I102M	ENST00000263826	NM_005465.4	102	atC/atG																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404566	8404566	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	33	380	0	ENST00000356435.5:c.4181A>T	p.His1394Leu	p.H1394L	ENST00000356435		1394	cAt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	17	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	49	512	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	73	646	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0043004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	40	493	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ATM	472	MSKCC	GRCh37	11	108115727	108115727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	23	353	0	ENST00000278616.4:c.875C>T	p.Pro292Leu	p.P292L	ENST00000278616	NM_000051.3	292	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	499	639	1	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432741	49432744	+	frameshift_variant	Frame_Shift_Del	DEL	GATA	GATA	-			P-0043038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	372	654	0	ENST00000301067.7:c.8395_8398del	p.Tyr2799SerfsTer51	p.Y2799Sfs*51	ENST00000301067	NM_003482.3	2799	TATCag/ag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862824	9862824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	363	670	0	ENST00000330684.3:c.2479G>A	p.Ala827Thr	p.A827T	ENST00000330684	NM_001134407.1	827	Gcc/Acc																																																																														
ATRX	546	MSKCC	GRCh37	X	76936728	76937405	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCATTACTCCAGAGAAAAGCACTAAACATTGATAAAGAAATTTTGTCATTTACTCAACAAATTTGAGATCCCTGATACTGAATACTAGCAATGTTCAAAATATCTTCCAATGGCAGCATAAAAATAAATAGGGAAACTTTTTTTAATAAACTCCTAAATAATTTTTAAGTGGTATTCTCCTAAGTAGTAACCCTAAATTTGATTAGCTTCAGAGGAAATTAAACAATGTAGTAACTCAAGAGGGGGAAGTACAAATTATGAATTTTTTATTTATTTTTGCATACCTGAAGATTGGCAAAATCCAGTATGTGAAGACAGCACTAAATTTTCAGTCACAGGCTTAATTTTCTGTTCATCGCTGCTTCCCTCACCTATAGAATTCTGATCATCATCTTCTATATCAGAAGAAGATGAGGATGTAATGTCAGCTTGCTTCCTTTTAGTGCTTGTTCTTAGGGAGTTTCTCTTTTTCTCCTTGACAATGACTGCCTTCTTTTTAGATGAAGTTCTTTGCTTCTTCTTTTTATTATCTTCAGAACTTTCCTCAGCATCAGATGATGATGAGCCACTTTGTATTTCCTTAGTATTTCTCTTTGAACTTAAATTTCTTCTTTCCCTCAATTCTATTCTTTTCAGTCTCTTATCAGAAGAGTTACAACCATCTTCTTTCATGGAATA	TCATTACTCCAGAGAAAAGCACTAAACATTGATAAAGAAATTTTGTCATTTACTCAACAAATTTGAGATCCCTGATACTGAATACTAGCAATGTTCAAAATATCTTCCAATGGCAGCATAAAAATAAATAGGGAAACTTTTTTTAATAAACTCCTAAATAATTTTTAAGTGGTATTCTCCTAAGTAGTAACCCTAAATTTGATTAGCTTCAGAGGAAATTAAACAATGTAGTAACTCAAGAGGGGGAAGTACAAATTATGAATTTTTTATTTATTTTTGCATACCTGAAGATTGGCAAAATCCAGTATGTGAAGACAGCACTAAATTTTCAGTCACAGGCTTAATTTTCTGTTCATCGCTGCTTCCCTCACCTATAGAATTCTGATCATCATCTTCTATATCAGAAGAAGATGAGGATGTAATGTCAGCTTGCTTCCTTTTAGTGCTTGTTCTTAGGGAGTTTCTCTTTTTCTCCTTGACAATGACTGCCTTCTTTTTAGATGAAGTTCTTTGCTTCTTCTTTTTATTATCTTCAGAACTTTCCTCAGCATCAGATGATGATGAGCCACTTTGTATTTCCTTAGTATTTCTCTTTGAACTTAAATTTCTTCTTTCCCTCAATTCTATTCTTTTCAGTCTCTTATCAGAAGAGTTACAACCATCTTCTTTCATGGAATA	-			P-0043038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			-1	122	4	0	ENST00000373344.5:c.3343_3736+284del		p.X1115_splice	ENST00000373344	NM_000489.3	1115																																																																															
ATRX	546	MSKCC	GRCh37	X	76938210	76938211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTTTTGTATTTGGAAT			P-0043038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	124	341	0	ENST00000373344.5:c.2521_2537dup	p.Asp846GlufsTer29	p.D846Efs*29	ENST00000373344	NM_000489.3	846	gat/gaATTCCAAATACAAAAGAt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202851	16202851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	135	625	1	ENST00000375759.3:c.559C>T	p.Arg187Trp	p.R187W	ENST00000375759	NM_015001.2	187	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107136	27107137	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	110	552	0	ENST00000324856.7:c.6749_6750del	p.Glu2250ValfsTer27	p.E2250Vfs*27	ENST00000324856	NM_006015.4	2249	tcAGag/tcag																																																																														
STK40	83931	MSKCC	GRCh37	1	36807519	36807519	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	181	780	0	ENST00000373129.3:c.1145A>T	p.Gln382Leu	p.Q382L	ENST00000373129	NM_032017.1	382	cAg/cTg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65301104	65301104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	71	294	0	ENST00000342505.4:c.3344C>T	p.Pro1115Leu	p.P1115L	ENST00000342505	NM_002227.2	1115	cCg/cTg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65304164	65304164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	91	247	0	ENST00000342505.4:c.2951C>T	p.Ala984Val	p.A984V	ENST00000342505	NM_002227.2	984	gCc/gTc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874197	155874197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	188	653	0	ENST00000368323.3:c.334C>T	p.Arg112Cys	p.R112C	ENST00000368323	NM_006912.5	112	Cgt/Tgt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206646635	206646635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	206	1005	1	ENST00000367120.3:c.65G>A	p.Ser22Asn	p.S22N	ENST00000367120	NM_014002.3	22	aGt/aAt																																																																														
FH	2271	MSKCC	GRCh37	1	241669326	241669326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	105	426	0	ENST00000366560.3:c.881C>T	p.Ala294Val	p.A294V	ENST00000366560	NM_000143.3	294	gCt/gTt																																																																														
SUFU	51684	MSKCC	GRCh37	10	104375030	104375030	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79299301		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	136	557	0	ENST00000369902.3:c.1028G>A	p.Arg343His	p.R343H	ENST00000369902	NM_016169.3	343	cGc/cAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920393	114920393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	108	489	0	ENST00000543371.1:c.1334A>C	p.Lys445Thr	p.K445T	ENST00000543371	NM_001198531.1	445	aAg/aCg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925334	114925334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	106	575	0	ENST00000543371.1:c.1412G>A	p.Arg471His	p.R471H	ENST00000543371	NM_001198531.1	471	cGc/cAc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380410	14380410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	26	185	0	ENST00000256196.4:c.7G>A	p.Ala3Thr	p.A3T	ENST00000256196		3	Gcg/Acg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572198	64572198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	149	557	1	ENST00000337652.1:c.1456C>T	p.Arg486Trp	p.R486W	ENST00000337652	NM_130803.2	486	Cgg/Tgg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94203741	94203741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	72	163	0	ENST00000323929.3:c.913C>T	p.Arg305Trp	p.R305W	ENST00000323929	NM_005591.3	305	Cgg/Tgg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376700	118376700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	113	552	1	ENST00000534358.1:c.10093G>A	p.Val3365Ile	p.V3365I	ENST00000534358	NM_005933.3	3365	Gtc/Atc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404740	404740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	76	383	0	ENST00000399788.2:c.4454A>G	p.Glu1485Gly	p.E1485G	ENST00000399788	NM_001042603.1	1485	gAg/gGg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	420116	420116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	125	575	0	ENST00000399788.2:c.3151C>T	p.Arg1051Trp	p.R1051W	ENST00000399788	NM_001042603.1	1051	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420852	49420852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	108	629	0	ENST00000301067.7:c.14897G>T	p.Arg4966Leu	p.R4966L	ENST00000301067	NM_003482.3	4966	cGg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421893	49421893	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	155	751	0	ENST00000301067.7:c.14414A>C	p.Glu4805Ala	p.E4805A	ENST00000301067	NM_003482.3	4805	gAg/gCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433122	49433122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	168	853	2	ENST00000301067.7:c.8249G>T	p.Gly2750Val	p.G2750V	ENST00000301067	NM_003482.3	2750	gGg/gTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	194	924	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
POLE	5426	MSKCC	GRCh37	12	133202740	133202740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs5745068		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	148	661	0	ENST00000320574.5:c.6494G>A	p.Arg2165His	p.R2165H	ENST00000320574	NM_006231.2	2165	cGc/cAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560382	95560382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	142	609	0	ENST00000343455.3:c.5207G>A	p.Arg1736Gln	p.R1736Q	ENST00000343455	NM_177438.2	1736	cGg/cAg																																																																														
MGA	23269	MSKCC	GRCh37	15	42003191	42003191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	152	540	0	ENST00000219905.7:c.2728C>T	p.Arg910Ter	p.R910*	ENST00000219905	NM_001164273.1	910	Cga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749302	43749302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	146	405	1	ENST00000382044.4:c.1504C>T	p.Pro502Ser	p.P502S	ENST00000382044	NM_001141980.1	502	Cca/Tca																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134359	2134359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	204	1007	0	ENST00000219476.3:c.4136C>T	p.Ser1379Leu	p.S1379L	ENST00000219476	NM_000548.3	1379	tCg/tTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916133	9916133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	86	508	0	ENST00000330684.3:c.2156G>A	p.Ser719Asn	p.S719N	ENST00000330684	NM_001134407.1	719	aGc/aAc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868112	56868112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	54	607	0	ENST00000308159.5:c.1610G>A	p.Arg537Gln	p.R537Q	ENST00000308159	NM_014669.4	537	cGg/cAg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660602	67660602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	179	629	0	ENST00000264010.4:c.1502A>G	p.Asp501Gly	p.D501G	ENST00000264010	NM_006565.3	501	gAt/gGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832404	72832404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	91	519	0	ENST00000268489.5:c.4177G>T	p.Val1393Leu	p.V1393L	ENST00000268489	NM_006885.3	1393	Gtg/Ttg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993863	72993863	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	66	592	0	ENST00000268489.5:c.182T>C	p.Leu61Pro	p.L61P	ENST00000268489	NM_006885.3	61	cTc/cCc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348221	89348221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	178	906	1	ENST00000301030.4:c.4729G>A	p.Asp1577Asn	p.D1577N	ENST00000301030	NM_001256183.1	1577	Gac/Aac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348413	89348413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	158	942	1	ENST00000301030.4:c.4537G>A	p.Val1513Met	p.V1513M	ENST00000301030	NM_001256183.1	1513	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	104	857	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118616	17118616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112980409		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	170	511	0	ENST00000285071.4:c.1315G>A	p.Val439Met	p.V439M	ENST00000285071	NM_144997.5	439	Gtg/Atg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40368115	40368115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	161	626	0	ENST00000293328.3:c.1390C>A	p.Leu464Met	p.L464M	ENST00000293328	NM_012448.3	464	Ctg/Atg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119791	70119791	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	177	797	0	ENST00000245479.2:c.793C>T	p.Gln265Ter	p.Q265*	ENST00000245479	NM_000346.3	265	Cag/Tag																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936850	78936850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	97	430	0	ENST00000306801.3:c.3932C>T	p.Pro1311Leu	p.P1311L	ENST00000306801	NM_020761.2	1311	cCg/cTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7119479	7119479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	84	663	0	ENST00000302850.5:c.3775G>A	p.Asp1259Asn	p.D1259N	ENST00000302850	NM_000208.2	1259	Gac/Aac																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247805	10247805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	241	938	0	ENST00000340748.4:c.4397G>A	p.Arg1466His	p.R1466H	ENST00000340748		1466	cGc/cAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600005	10600005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	99	886	0	ENST00000171111.5:c.1571G>A	p.Gly524Asp	p.G524D	ENST00000171111	NM_203500.1	524	gGc/gAc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627496	14627496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	174	610	1	ENST00000254322.2:c.574C>T	p.Pro192Ser	p.P192S	ENST00000254322	NM_006145.1	192	Ccc/Tcc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276311	15276311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	170	803	0	ENST00000263388.2:c.5683C>T	p.Arg1895Cys	p.R1895C	ENST00000263388	NM_000435.2	1895	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212576	36212576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	248	1066	0	ENST00000222270.7:c.2327G>A	p.Arg776Gln	p.R776Q	ENST00000222270	NM_014727.1	776	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228789	36228789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	194	890	0	ENST00000222270.7:c.7688C>T	p.Ala2563Val	p.A2563V	ENST00000222270	NM_014727.1	2563	gCc/gTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42792080	42792080	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141544536		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	142	718	0	ENST00000575354.2:c.884C>T	p.Thr295Met	p.T295M	ENST00000575354	NM_015125.3	295	aCg/aTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796340	42796340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	91	1029	0	ENST00000575354.2:c.2989C>A	p.Leu997Met	p.L997M	ENST00000575354	NM_015125.3	997	Ctg/Atg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797780	42797780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	167	852	0	ENST00000575354.2:c.3832G>A	p.Val1278Ile	p.V1278I	ENST00000575354	NM_015125.3	1278	Gtc/Atc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39283850	39283850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	73	137	0	ENST00000402219.2:c.503C>T	p.Ala168Val	p.A168V	ENST00000402219	NM_005633.3	168	gCt/gTt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48032110	48032111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	71	344	0	ENST00000234420.5:c.3504_3505dup	p.Pro1169HisfsTer16	p.P1169Hfs*16	ENST00000234420	NM_000179.2	1167	ctc/ctCAc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719270	61719270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	119	348	0	ENST00000401558.2:c.1787G>A	p.Arg596His	p.R596H	ENST00000401558	NM_003400.3	596	cGc/cAc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172092	99172092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	135	678	0	ENST00000074304.5:c.1658G>A	p.Arg553Gln	p.R553Q	ENST00000074304	NM_001134224.1	553	cGg/cAg																																																																														
CASP8	841	MSKCC	GRCh37	2	202123055	202123055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	106	530	1	ENST00000358485.4:c.101G>A	p.Gly34Asp	p.G34D	ENST00000358485	NM_001080125.1	34	gGc/gAc																																																																														
CASP8	841	MSKCC	GRCh37	2	202141584	202141584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	43	377	0	ENST00000358485.4:c.872C>A	p.Pro291His	p.P291H	ENST00000358485	NM_001080125.1	291	cCt/cAt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	44	333	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845277	42845277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	164	805	4	ENST00000398585.3:c.985G>A	p.Val329Met	p.V329M	ENST00000398585	NM_001135099.1	329	Gtg/Atg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713435	30713435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	136	624	2	ENST00000359013.4:c.835C>T	p.Arg279Cys	p.R279C	ENST00000359013	NM_001024847.2	279	Cgc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52613079	52613079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	86	393	0	ENST00000394830.3:c.3449G>A	p.Arg1150His	p.R1150H	ENST00000394830	NM_018313.4	1150	cGt/cAt																																																																														
MITF	4286	MSKCC	GRCh37	3	69928358	69928358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	85	468	0	ENST00000352241.4:c.178C>T	p.Arg60Cys	p.R60C	ENST00000352241	NM_198159.2	60	Cgc/Tgc																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427727	72427727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	75	434	0	ENST00000477973.2:c.761G>A	p.Val255Ile	p.V255I	ENST00000477973	NM_012234.5	255	Gtc/Atc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204912	128204912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	220	934	0	ENST00000341105.2:c.529C>T	p.Pro177Ser	p.P177S	ENST00000341105	NM_032638.4	177	Cca/Tca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	130	372	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190816	185190816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	71	787	1	ENST00000265026.3:c.1697C>T	p.Ala566Val	p.A566V	ENST00000265026	NM_004721.4	566	gCa/gTa																																																																														
BCL6	604	MSKCC	GRCh37	3	187447236	187447236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	146	674	5	ENST00000232014.4:c.957delC	p.Asn320MetfsTer4	p.N320Mfs*4	ENST00000232014	NM_001130845.1	319	ccC/cc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1976713	1976713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	124	701	0	ENST00000382891.5:c.3496G>A	p.Val1166Ile	p.V1166I	ENST00000382891	NM_133335.3	1166	Gtc/Atc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524630	187524630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	118	698	1	ENST00000441802.2:c.11050C>T	p.Gln3684Ter	p.Q3684*	ENST00000441802	NM_005245.3	3684	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540211	187540211	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	96	407	0	ENST00000441802.2:c.7529T>C	p.Leu2510Pro	p.L2510P	ENST00000441802	NM_005245.3	2510	cTg/cCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1282628	1282628	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	195	732	0	ENST00000310581.5:c.1685A>G	p.Tyr562Cys	p.Y562C	ENST00000310581	NM_198253.2	562	tAt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1293661	1293661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	80	965	0	ENST00000310581.5:c.1340G>T	p.Arg447Leu	p.R447L	ENST00000310581	NM_198253.2	447	cGc/cTc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526775	31526775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	116	718	1	ENST00000344624.3:c.265G>A	p.Ala89Thr	p.A89T	ENST00000344624		89	Gcg/Acg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161221	56161221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781300314		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	107	329	0	ENST00000399503.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000399503	NM_005921.1	364	Cgg/Tgg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	103	421	0	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	135	258	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	89	252	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176671242	176671242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	98	230	0	ENST00000439151.2:c.4349C>T	p.Ala1450Val	p.A1450V	ENST00000439151	NM_022455.4	1450	gCc/gTc																																																																														
IRF4	3662	MSKCC	GRCh37	6	397231	397231	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	165	441	0	ENST00000380956.4:c.616C>T	p.Gln206Ter	p.Q206*	ENST00000380956	NM_001195286.1	206	Caa/Taa																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839945	27839945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	82	805	0	ENST00000328488.2:c.149G>A	p.Arg50His	p.R50H	ENST00000328488	NM_003533.2	50	cGc/cAc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818245	32818245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	149	740	1	ENST00000354258.4:c.1280C>A	p.Ala427Asp	p.A427D	ENST00000354258	NM_000593.5	427	gCc/gAc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818837	32818837	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	157	788	0	ENST00000354258.4:c.1114C>T	p.Arg372Ter	p.R372*	ENST00000354258	NM_000593.5	372	Cga/Tga																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821091	32821091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	184	984	1	ENST00000354258.4:c.503C>A	p.Pro168Gln	p.P168Q	ENST00000354258	NM_000593.5	168	cCg/cAg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553776	106553776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	37	470	0	ENST00000369096.4:c.1741G>A	p.Ala581Thr	p.A581T	ENST00000369096	NM_001198.3	581	Gcc/Acc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528907	157528907	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	148	600	0	ENST00000346085.5:c.6632A>G	p.Asn2211Ser	p.N2211S	ENST00000346085	NM_020732.3	2211	aAc/aGc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954952	2954952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	62	803	0	ENST00000396946.4:c.2758C>T	p.Arg920Cys	p.R920C	ENST00000396946	NM_032415.4	920	Cgc/Tgc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508836	106508836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	119	568	0	ENST00000359195.3:c.830G>A	p.Arg277Gln	p.R277Q	ENST00000359195	NM_002649.2	277	cGg/cAg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542548	141542548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	124	632	0	ENST00000220592.5:c.2438C>T	p.Ala813Val	p.A813V	ENST00000220592	NM_012154.3	813	gCc/gTc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145736900	145736900	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	191	969	1	ENST00000428558.2:c.3541C>T	p.Arg1181Ter	p.R1181*	ENST00000428558	NM_004260.3	1181	Cga/Tga																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078342	5078342	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	40	114	0	ENST00000381652.3:c.2033del	p.Asn678IlefsTer53	p.N678Ifs*53	ENST00000381652	NM_004972.3	677	Aaa/aa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5123061	5123061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	79	414	0	ENST00000381652.3:c.3117C>A	p.Ser1039Arg	p.S1039R	ENST00000381652	NM_004972.3	1039	agC/agA																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126730	5126730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	59	278	0	ENST00000381652.3:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000381652	NM_004972.3	1113	cGc/cAc																																																																														
TEK	7010	MSKCC	GRCh37	9	27157952	27157952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	103	690	0	ENST00000380036.4:c.176G>T	p.Arg59Met	p.R59M	ENST00000380036	NM_000459.3	59	aGg/aTg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966665	36966665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	85	592	1	ENST00000358127.4:c.661C>T	p.Arg221Trp	p.R221W	ENST00000358127	NM_001280556.1	221	Cgg/Tgg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80336333	80336333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	63	423	0	ENST00000286548.4:c.986C>T	p.Thr329Met	p.T329M	ENST00000286548	NM_002072.3	329	aCg/aTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759416	133759416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	134	879	1	ENST00000318560.5:c.1739C>T	p.Pro580Leu	p.P580L	ENST00000318560	NM_005157.4	580	cCg/cTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396836	139396836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	158	767	0	ENST00000277541.6:c.5272C>T	p.Arg1758Cys	p.R1758C	ENST00000277541	NM_017617.3	1758	Cgc/Tgc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139794916	139794916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	114	598	0	ENST00000247668.2:c.310C>T	p.Pro104Ser	p.P104S	ENST00000247668	NM_021138.3	104	Ccg/Tcg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032572	47032572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	187	401	0	ENST00000329236.7:c.247C>T	p.Arg83Trp	p.R83W	ENST00000329236	NM_001204466.1	83	Cgg/Tgg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220555	123220555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	131	296	1	ENST00000218089.9:c.3212G>A	p.Arg1071Gln	p.R1071Q	ENST00000218089	NM_001042749.1	1071	cGg/cAg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432116	121432116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	142	854	0	ENST00000257555.6:c.863G>C	p.Gly288Ala	p.G288A	ENST00000257555		288	gGg/gCg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226165	2226165	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	24	762	0	ENST00000326181.6:c.1862A>C	p.Tyr621Ser	p.Y621S	ENST00000326181	NM_032271.2	621	tAc/tCc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	142	337	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0043144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	164	399	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	31	120	2	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
ERG	2078	MSKCC	GRCh37	21	39775467	39775467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	112	344	1	ENST00000288319.7:c.553G>A	p.Ala185Thr	p.A185T	ENST00000288319	NM_182918.3	185	Gcc/Acc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711012	114711012	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	80	215	0	ENST00000543371.1:c.238del	p.Arg80GlyfsTer28	p.R80Gfs*28	ENST00000543371	NM_001198531.1	79	tCc/tc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805917	89805917	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	126	452	0	ENST00000389301.3:c.3979C>G	p.His1327Asp	p.H1327D	ENST00000389301	NM_000135.2	1327	Cac/Gac																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988517	36988517	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	275	626	0	ENST00000354822.5:c.136A>T	p.Ile46Phe	p.I46F	ENST00000354822	NM_001079668.2	46	Atc/Ttc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	84	518	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2951838	2951838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199916182		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	178	840	2	ENST00000396946.4:c.3112G>A	p.Ala1038Thr	p.A1038T	ENST00000396946	NM_032415.4	1038	Gcc/Acc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	39	380	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	156	868	5	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
ATRX	546	MSKCC	GRCh37	X	76909629	76909629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	60	562	2	ENST00000373344.5:c.4276C>T	p.Arg1426Ter	p.R1426*	ENST00000373344	NM_000489.3	1426	Cga/Tga																																																																														
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	62	285	6	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																														
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	30	212	2	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	344	704	0	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	46	271	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	36	201	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636143	28636143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	167	681	0	ENST00000241453.7:c.229G>A	p.Glu77Lys	p.E77K	ENST00000241453	NM_004119.2	77	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29556463	29556463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	79	450	0	ENST00000358273.4:c.2835del	p.Phe945LeufsTer9	p.F945Lfs*9	ENST00000358273	NM_001042492.2	944	Ttt/tt																																																																														
RB1	5925	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	51	355	0	ENST00000267163.4:c.1959delA	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435153	110435153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	192	914	0	ENST00000375856.3:c.3248C>T	p.Pro1083Leu	p.P1083L	ENST00000375856	NM_003749.2	1083	cCg/cTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	335	917	1	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	131	763	2	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372389	55372389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	180	996	0	ENST00000297316.4:c.1079G>A	p.Arg360His	p.R360H	ENST00000297316	NM_022454.3	360	cGc/cAc																																																																														
PARK2	0	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	139	588	0	ENST00000366898.1:c.1283delA	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	14	156	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	58	413	0	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343537	343537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	250	1034	1	ENST00000262320.3:c.2137C>T	p.Arg713Cys	p.R713C	ENST00000262320	NM_003502.3	713	Cgt/Tgt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209116262	209116263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs754375602		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	29	314	0	ENST00000345146.2:c.13dup	p.Ile5AsnfsTer13	p.I5Nfs*13	ENST00000345146	NM_005896.2	5	atc/aAtc																																																																														
TP63	8626	MSKCC	GRCh37	3	189526209	189526210	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	173	842	0	ENST00000264731.3:c.480_481delTC	p.Pro161IlefsTer36	p.P161Ifs*36	ENST00000264731	NM_003722.4	158	gCT/g																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713386	40713386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	176	867	0	ENST00000373198.4:c.4129C>T	p.Arg1377Ter	p.R1377*	ENST00000373198	NM_133170.3	1377	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954273	32954273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	68	470	0	ENST00000380152.3:c.9253delA	p.Thr3085GlnfsTer19	p.T3085Qfs*19	ENST00000380152		3083	Aaa/aa																																																																														
REL	5966	MSKCC	GRCh37	2	61149057	61149057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	80	445	0	ENST00000295025.8:c.1247C>G	p.Ala416Gly	p.A416G	ENST00000295025	NM_002908.2	416	gCc/gGc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681120	117681120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	113	507	0	ENST00000368508.3:c.3500delT	p.Leu1167Ter	p.L1167*	ENST00000368508	NM_002944.2	1167	tTa/ta																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	150	681	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098392	11098392	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	153	818	0	ENST00000344626.4:c.914del	p.Pro305ArgfsTer21	p.P305Rfs*21	ENST00000344626	NM_003072.3	304	Ccc/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991697	72991699	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	88	480	5	ENST00000268489.5:c.2346_2348del	p.Ala784del	p.A784del	ENST00000268489	NM_006885.3	782	gcGGCa/gca																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813396	102813396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	167	673	0	ENST00000307046.8:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000307046	NM_001111285.1	98	cGg/cAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956723	68956723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	136	649	0	ENST00000288368.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000288368	NM_024870.2	281	Cgg/Tgg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625110	69625110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	125	830	0	ENST00000334134.2:c.683C>T	p.Ser228Leu	p.S228L	ENST00000334134	NM_005247.2	228	tCg/tTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29661917	29661917	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	78	524	0	ENST00000358273.4:c.5878del	p.Cys1960AlafsTer19	p.C1960Afs*19	ENST00000358273	NM_001042492.2	1958	cgT/cg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197713	66197713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	76	491	0	ENST00000273854.3:c.2986G>A	p.Ala996Thr	p.A996T	ENST00000273854	NM_004439.5	996	Gct/Act																																																																														
FANCA	2175	MSKCC	GRCh37	16	89811469	89811469	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147017625		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	170	775	1	ENST00000389301.3:c.3524C>T	p.Pro1175Leu	p.P1175L	ENST00000389301	NM_000135.2	1175	cCg/cTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678720	52678720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	75	470	0	ENST00000394830.3:c.899G>T	p.Arg300Met	p.R300M	ENST00000394830	NM_018313.4	300	aGg/aTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41533773	41533773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	112	543	0	ENST00000263253.7:c.1739G>A	p.Arg580Gln	p.R580Q	ENST00000263253	NM_001429.3	580	cGa/cAa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432249	432249	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	94	451	0	ENST00000399788.2:c.2274del	p.Asp759IlefsTer2	p.D759Ifs*2	ENST00000399788	NM_001042603.1	758	aaA/aa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933409	39933409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	196	737	3	ENST00000378444.4:c.1190C>T	p.Pro397Leu	p.P397L	ENST00000378444	NM_001123385.1	397	cCg/cTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528284	157528284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	185	817	0	ENST00000346085.5:c.6013del	p.Val2005TrpfsTer16	p.V2005Wfs*16	ENST00000346085	NM_020732.3	2003	aaG/aa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2193766	2193766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	178	652	0	ENST00000398665.3:c.572C>T	p.Pro191Leu	p.P191L	ENST00000398665	NM_032482.2	191	cCg/cTg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687094	37687094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	123	635	1	ENST00000447079.4:c.3998G>A	p.Arg1333His	p.R1333H	ENST00000447079	NM_015083.1	1333	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434351	49434351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	190	1006	2	ENST00000301067.7:c.7202G>A	p.Arg2401His	p.R2401H	ENST00000301067	NM_003482.3	2401	cGc/cAc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136747	2136747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	238	939	4	ENST00000219476.3:c.4864G>A	p.Ala1622Thr	p.A1622T	ENST00000219476	NM_000548.3	1622	Gcc/Acc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922046	39922046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	206	858	0	ENST00000378444.4:c.4126G>T	p.Gly1376Ter	p.G1376*	ENST00000378444	NM_001123385.1	1376	Gga/Tga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729291	41729291	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	81	532	0	ENST00000242208.4:c.1238del	p.Lys413ArgfsTer6	p.K413Rfs*6	ENST00000242208	NM_002192.2	413	aAg/ag																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868076	56868076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141371158		P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	101	574	0	ENST00000308159.5:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000308159	NM_014669.4	525	cGg/cAg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777670	9777670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	189	768	1	ENST00000377346.4:c.1006G>A	p.Asp336Asn	p.D336N	ENST00000377346	NM_005026.3	336	Gac/Aac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256925	16256925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	139	734	0	ENST00000375759.3:c.4190C>T	p.Ala1397Val	p.A1397V	ENST00000375759	NM_015001.2	1397	gCa/gTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70406668	70406668	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	80	624	0	ENST00000373644.4:c.4182T>A	p.Asn1394Lys	p.N1394K	ENST00000373644	NM_030625.2	1394	aaT/aaA																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941900	71941900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	192	906	4	ENST00000298229.2:c.1258G>A	p.Glu420Lys	p.E420K	ENST00000298229	NM_001567.3	420	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133256771	133256771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	88	574	1	ENST00000320574.5:c.323C>T	p.Thr108Ile	p.T108I	ENST00000320574	NM_006231.2	108	aCc/aTc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563261	21563261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	222	1097	0	ENST00000382592.4:c.658G>A	p.Gly220Ser	p.G220S	ENST00000382592	NM_014572.2	220	Ggc/Agc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434623	110434623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	136	925	0	ENST00000375856.3:c.3778G>A	p.Glu1260Lys	p.E1260K	ENST00000375856	NM_003749.2	1260	Gag/Aag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762229	43762231	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	143	820	0	ENST00000382044.4:c.1214_1216del	p.Glu405del	p.E405del	ENST00000382044	NM_001141980.1	405	gAAGga/gga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821686	72821686	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	55	348	1	ENST00000268489.5:c.10489C>A	p.Leu3497Met	p.L3497M	ENST00000268489	NM_006885.3	3497	Ctg/Atg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973698	15973698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	117	518	0	ENST00000268712.3:c.4294C>T	p.Arg1432Trp	p.R1432W	ENST00000268712	NM_006311.3	1432	Cgg/Tgg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733011	74733011	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	62	589	0	ENST00000359995.5:c.232del	p.Ala78ProfsTer154	p.A78Pfs*154	ENST00000359995	NM_001195427.1	78	Gcc/cc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603015	48603015	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	74	342	0	ENST00000342988.3:c.1316A>G	p.Asp439Gly	p.D439G	ENST00000342988	NM_005359.5	439	gAt/gGt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218684	36218684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	190	915	0	ENST00000222270.7:c.4388C>A	p.Ser1463Tyr	p.S1463Y	ENST00000222270	NM_014727.1	1463	tCt/tAt																																																																														
AXL	558	MSKCC	GRCh37	19	41727883	41727883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	193	957	1	ENST00000301178.4:c.508G>T	p.Asp170Tyr	p.D170Y	ENST00000301178	NM_021913.4	170	Gac/Tac																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909748	50909748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	226	1011	0	ENST00000440232.2:c.1468C>T	p.Gln490Ter	p.Q490*	ENST00000440232	NM_002691.3	490	Cag/Tag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47641407	47641407	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	92	392	0	ENST00000233146.2:c.793-1G>T		p.X265_splice	ENST00000233146	NM_000251.2	265																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212483927	212483927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	62	521	0	ENST00000342788.4:c.2276C>A	p.Pro759His	p.P759H	ENST00000342788	NM_005235.2	759	cCc/cAc																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288377	21288377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	196	775	0	ENST00000354336.3:c.622G>A	p.Ala208Thr	p.A208T	ENST00000354336	NM_005207.3	208	Gct/Act																																																																														
EP300	2033	MSKCC	GRCh37	22	41554474	41554474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	114	585	0	ENST00000263253.7:c.3560G>A	p.Arg1187His	p.R1187H	ENST00000263253	NM_001429.3	1187	cGt/cAt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30648424	30648424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	114	739	0	ENST00000359013.4:c.49T>C	p.Trp17Arg	p.W17R	ENST00000359013	NM_001024847.2	17	Tgg/Cgg																																																																														
MITF	4286	MSKCC	GRCh37	3	70014334	70014334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	159	654	2	ENST00000352241.4:c.1498G>A	p.Gly500Arg	p.G500R	ENST00000352241	NM_198159.2	500	Gga/Aga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027015	71027015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	153	607	0	ENST00000318789.4:c.1312C>T	p.Arg438Trp	p.R438W	ENST00000318789	NM_032682.5	438	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948037	178948037	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	35	230	0	ENST00000263967.3:c.2813del	p.Leu938TrpfsTer19	p.L938Wfs*19	ENST00000263967	NM_006218.2	937	Ttt/tt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806558	1806558	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	123	789	0	ENST00000260795.2:c.1274T>C	p.Leu425Pro	p.L425P	ENST00000260795		425	cTg/cCg																																																																														
TET2	54790	MSKCC	GRCh37	4	106156072	106156073	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	76	369	0	ENST00000380013.4:c.978dup	p.Ser327IlefsTer4	p.S327Ifs*4	ENST00000380013	NM_001127208.2	325	caa/cAaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106197289	106197290	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	59	383	0	ENST00000380013.4:c.5625_5626del	p.Ala1876LysfsTer3	p.A1876Kfs*3	ENST00000380013	NM_001127208.2	1874	gaGTgt/gagt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538982	187538982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	111	506	0	ENST00000441802.2:c.8758G>A	p.Ala2920Thr	p.A2920T	ENST00000441802	NM_005245.3	2920	Gcc/Acc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540501	187540501	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	99	433	0	ENST00000441802.2:c.7239del	p.Ala2414ProfsTer9	p.A2414Pfs*9	ENST00000441802	NM_005245.3	2413	aaA/aa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131973793	131973793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	81	318	2	ENST00000265335.6:c.3496C>T	p.Arg1166Trp	p.R1166W	ENST00000265335		1166	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987211	2987211	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	55	490	0	ENST00000396946.4:c.218C>T	p.Ala73Val	p.A73V	ENST00000396946	NM_032415.4	73	gCa/gTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878011	151878014	+	frameshift_variant	Frame_Shift_Del	DEL	AGTC	AGTC	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	96	401	0	ENST00000262189.6:c.6931_6934del	p.Asp2311LeufsTer53	p.D2311Lfs*53	ENST00000262189	NM_170606.2	2311	GACTct/ct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400291	139400291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	217	941	0	ENST00000277541.6:c.4057G>A	p.Gly1353Ser	p.G1353S	ENST00000277541	NM_017617.3	1353	Ggc/Agc																																																																														
ARAF	369	MSKCC	GRCh37	X	47430825	47430825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	197	899	2	ENST00000377045.4:c.1790G>A	p.Cys597Tyr	p.C597Y	ENST00000377045	NM_001654.4	597	tGc/tAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70354996	70354996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	154	818	2	ENST00000374080.3:c.4918C>T	p.Pro1640Ser	p.P1640S	ENST00000374080		1640	Cca/Tca																																																																														
MED12	9968	MSKCC	GRCh37	X	70360687	70360687	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	35	177	0	ENST00000374080.3:c.6247C>T	p.Gln2083Ter	p.Q2083*	ENST00000374080		2083	Cag/Tag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191813	123191813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	57	355	0	ENST00000218089.9:c.1402T>C	p.Phe468Leu	p.F468L	ENST00000218089	NM_001042749.1	468	Ttt/Ctt																																																																														
TET1	80312	MSKCC	GRCh37	10	70406662	70406662	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	76	632	0	ENST00000373644.4:c.4176del	p.Asn1394IlefsTer7	p.N1394Ifs*7	ENST00000373644	NM_030625.2	1392	caG/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	171	676	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	48	348	0	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																														
APC	324	MSKCC	GRCh37	5	112174091	112174094	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	57	385	0	ENST00000257430.4:c.2802_2805delTTAC	p.Tyr935IlefsTer19	p.Y935Ifs*19	ENST00000257430	NM_000038.5	934	ACTTac/ac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259328	89259328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	26	442	0	ENST00000336596.2:c.472G>T	p.Gly158Trp	p.G158W	ENST00000336596	NM_005233.5	158	Ggg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249460	153249460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	96	601	1	ENST00000281708.4:c.1318G>A	p.Asp440Asn	p.D440N	ENST00000281708	NM_033632.3	440	Gat/Aat																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964055	28964055	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	66	507	0	ENST00000282397.4:c.1847C>G	p.Ser616Cys	p.S616C	ENST00000282397	NM_002019.4	616	tCc/tGc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554003	63554003	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	110	534	0	ENST00000307078.5:c.736A>G	p.Thr246Ala	p.T246A	ENST00000307078	NM_004655.3	246	Acc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578491	7578491	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	935	886	0	ENST00000269305.4:c.439delG	p.Val147LeufsTer23	p.V147Lfs*23	ENST00000269305	NM_001126112.2	147	Gtt/tt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593613	55593614	+	missense_variant	Missense_Mutation	DNP	TT	TT	AG			P-0043241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	280	389	0	ENST00000288135.5:c.1679_1680delinsAG	p.Val560Glu	p.V560E	ENST00000288135	NM_000222.2	560	gTT/gAG																																																																														
NF1	4763	MSKCC	GRCh37	17	29665756	29665756	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	141	301	1	ENST00000358273.4:c.6854del	p.Tyr2285SerfsTer6	p.Y2285Sfs*6	ENST00000358273	NM_001042492.2	2285	tAc/tc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250906	153250906	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	141	334	0	ENST00000281708.4:c.1154C>G	p.Thr385Arg	p.T385R	ENST00000281708	NM_033632.3	385	aCa/aGa																																																																														
RHOA	387	MSKCC	GRCh37	3	49412884	49412884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	344	555	0	ENST00000418115.1:c.139G>A	p.Glu47Lys	p.E47K	ENST00000418115	NM_001664.2	47	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44879925	44879925	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs189751539		P-0043298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	305	513	0	ENST00000377967.4:c.514C>T	p.Arg172Ter	p.R172*	ENST00000377967	NM_021140.2	172	Cga/Tga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981277	201981278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	1213	661	0	ENST00000359651.3:c.358dup	p.Gln120ProfsTer15	p.Q120Pfs*15	ENST00000359651		119	gac/gaCc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434346	49434346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	358	724	0	ENST00000301067.7:c.7207C>G	p.Leu2403Val	p.L2403V	ENST00000301067	NM_003482.3	2403	Ctg/Gtg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027105	71027105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	193	475	0	ENST00000318789.4:c.1222A>G	p.Thr408Ala	p.T408A	ENST00000318789	NM_032682.5	408	Acg/Gcg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405123	139405123	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	52	619	0	ENST00000277541.6:c.2722A>G	p.Ile908Val	p.I908V	ENST00000277541	NM_017617.3	908	Atc/Gtc																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564651	139564651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	371	746	0	ENST00000308874.7:c.440G>A	p.Gly147Asp	p.G147D	ENST00000308874		147	gGc/gAc																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139565464	139565464	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	155	309	0	ENST00000308874.7:c.634G>A	p.Glu212Lys	p.E212K	ENST00000308874		212	Gag/Aag																																																																														
ARAF	369	MSKCC	GRCh37	X	47426112	47426112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	281	728	0	ENST00000377045.4:c.632G>A	p.Arg211His	p.R211H	ENST00000377045	NM_001654.4	211	cGc/cAc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	116	648	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	95	290	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682400	52682400	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	43	267	1	ENST00000394830.3:c.773del	p.Asn258MetfsTer25	p.N258Mfs*25	ENST00000394830	NM_018313.4	258	aAt/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023831	27023831	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	59	255	0	ENST00000324856.7:c.941del	p.Gly314AlafsTer49	p.G314Afs*49	ENST00000324856	NM_006015.4	313	Ggg/gg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907261	32907263	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	61	323	0	ENST00000380152.3:c.1650_1652del	p.Glu550del	p.E550del	ENST00000380152		549	aAGGag/aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	123	694	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222334	2222334	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	126	642	0	ENST00000326181.6:c.622del	p.Arg208GlufsTer38	p.R208Efs*38	ENST00000326181	NM_032271.2	206	gaC/ga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859392	151859393	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	50	373	0	ENST00000262189.6:c.11269_11270del	p.Gln3757GlufsTer18	p.Q3757Efs*18	ENST00000262189	NM_170606.2	3757	CAg/g																																																																														
MPL	4352	MSKCC	GRCh37	1	43814616	43814617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	114	432	0	ENST00000372470.3:c.1413dup	p.Gly472ArgfsTer11	p.G472Rfs*11	ENST00000372470	NM_005373.2	471	caa/cAaa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121437094	121437094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	123	549	0	ENST00000257555.6:c.1525G>A	p.Val509Met	p.V509M	ENST00000257555		509	Gtg/Atg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251109	99251109	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	87	513	1	ENST00000268035.6:c.418del	p.Ala140ProfsTer20	p.A140Pfs*20	ENST00000268035	NM_000875.3	138	cGg/cg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843553	3843553	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	77	422	0	ENST00000262367.5:c.1050del	p.Lys350AsnfsTer4	p.K350Nfs*4	ENST00000262367	NM_004380.2	350	aaA/aa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534362	187534362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	115	450	0	ENST00000441802.2:c.9364G>A	p.Ala3122Thr	p.A3122T	ENST00000441802	NM_005245.3	3122	Gcc/Acc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053186	180053186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	101	624	0	ENST00000261937.6:c.1183G>T	p.Gly395Cys	p.G395C	ENST00000261937	NM_182925.4	395	Ggc/Tgc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321357	1321357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	80	492	0	ENST00000381566.1:c.398C>T	p.Ala133Val	p.A133V	ENST00000381566		133	gCa/gTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412595	63412595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	63	246	0	ENST00000330258.3:c.572A>G	p.Glu191Gly	p.E191G	ENST00000330258	NM_152424.3	191	gAg/gGg																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	50	307	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	46	334	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112175645	112175645	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	40	339	0	ENST00000257430.4:c.4354del	p.Val1452TyrfsTer21	p.V1452Yfs*21	ENST00000257430	NM_000038.5	1452	Gta/ta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	80	582	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948712	71948712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	71	712	1	ENST00000298229.2:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000298229	NM_001567.3	1142	Cgc/Tgc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763340	59763340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	47	660	0	ENST00000259008.2:c.2762A>G	p.Tyr921Cys	p.Y921C	ENST00000259008	NM_032043.2	921	tAt/tGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125806	47125808	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0043567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	50	321	0	ENST00000409792.3:c.5462_5464del	p.Leu1821del	p.L1821del	ENST00000409792	NM_014159.6	1821	cTTCca/cca																																																																														
SDHA	6389	MSKCC	GRCh37	5	240484	240484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	61	113	0	ENST00000264932.6:c.1444C>T	p.Pro482Ser	p.P482S	ENST00000264932	NM_004168.2	482	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	136	282	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	63	484	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	39	282	0	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	54	391	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148508727	148508727	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	53	336	0	ENST00000320356.2:c.1937A>T	p.Tyr646Phe	p.Y646F	ENST00000320356	NM_004456.4	646	tAc/tTc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321372	1321372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	68	399	0	ENST00000381566.1:c.383C>T	p.Ser128Leu	p.S128L	ENST00000381566		128	tCg/tTg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023019	150023019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	94	439	0	ENST00000253339.5:c.244C>T	p.Arg82Ter	p.R82*	ENST00000253339		82	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976817	2976817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	86	559	1	ENST00000396946.4:c.1195G>A	p.Glu399Lys	p.E399K	ENST00000396946	NM_032415.4	399	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989487	212989487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	30	307	0	ENST00000342788.4:c.224C>T	p.Ser75Phe	p.S75F	ENST00000342788	NM_005235.2	75	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641054	117641054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	45	437	0	ENST00000368508.3:c.5917G>A	p.Gly1973Arg	p.G1973R	ENST00000368508	NM_002944.2	1973	Gga/Aga																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164686	36164686	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	80	574	1	ENST00000300305.3:c.1189C>T	p.Gln397Ter	p.Q397*	ENST00000300305		397	Caa/Taa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412494	80412494	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	53	297	0	ENST00000286548.4:c.547C>T	p.Arg183Ter	p.R183*	ENST00000286548	NM_002072.3	183	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976787	2976787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	100	580	0	ENST00000396946.4:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000396946	NM_032415.4	409	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779382	3779382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143180774		P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	86	607	0	ENST00000262367.5:c.5666C>T	p.Pro1889Leu	p.P1889L	ENST00000262367	NM_004380.2	1889	cCg/cTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286760	212286760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	38	299	0	ENST00000342788.4:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000342788	NM_005235.2	979	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1279483	1279483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	97	657	0	ENST00000310581.5:c.2053G>A	p.Asp685Asn	p.D685N	ENST00000310581	NM_198253.2	685	Gat/Aat																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524603	176524603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	179	579	0	ENST00000292408.4:c.2335G>A	p.Asp779Asn	p.D779N	ENST00000292408	NM_213647.1	779	Gat/Aat																																																																														
RAD50	10111	MSKCC	GRCh37	5	131930595	131930595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	86	259	0	ENST00000265335.6:c.1828C>T	p.His610Tyr	p.H610Y	ENST00000265335		610	Cat/Tat																																																																														
EP300	2033	MSKCC	GRCh37	22	41547850	41547850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	40	383	0	ENST00000263253.7:c.2831C>T	p.Ala944Val	p.A944V	ENST00000263253	NM_001429.3	944	gCt/gTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76907720	76907720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	59	421	0	ENST00000373344.5:c.4441C>T	p.Arg1481Trp	p.R1481W	ENST00000373344	NM_000489.3	1481	Cgg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29556190	29556190	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	22	97	0	ENST00000358273.4:c.2557C>T	p.Gln853Ter	p.Q853*	ENST00000358273	NM_001042492.2	853	Cag/Tag																																																																														
PARK2	0	MSKCC	GRCh37	6	161781129	161781129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	54	438	0	ENST00000366898.1:c.1276G>A	p.Glu426Lys	p.E426K	ENST00000366898	NM_004562.2	426	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291845	15291845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	70	593	0	ENST00000263388.2:c.2921G>A	p.Gly974Glu	p.G974E	ENST00000263388	NM_000435.2	974	gGg/gAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426786	212426786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	60	378	0	ENST00000342788.4:c.2329C>T	p.His777Tyr	p.H777Y	ENST00000342788	NM_005235.2	777	Cat/Tat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344269	118344269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	40	377	0	ENST00000534358.1:c.2395C>T	p.Pro799Ser	p.P799S	ENST00000534358	NM_005933.3	799	Cct/Tct																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36931999	36931999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	76	510	0	ENST00000361632.4:c.2470G>A	p.Gly824Arg	p.G824R	ENST00000361632		824	Ggg/Agg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424188	49424188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	43	289	0	ENST00000301067.7:c.13874C>T	p.Ser4625Leu	p.S4625L	ENST00000301067	NM_003482.3	4625	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099426	27099427	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	45	450	0	ENST00000324856.7:c.3663_3664delinsTT	p.Met1221_Gly1222delinsIleTrp	p.M1221_G1222delinsIW	ENST00000324856	NM_006015.4	1221	atGGgg/atTTgg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933476	36933476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	80	568	1	ENST00000361632.4:c.1811G>A	p.Ser604Asn	p.S604N	ENST00000361632		604	aGc/aAc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36945084	36945084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	86	528	0	ENST00000361632.4:c.14G>A	p.Gly5Glu	p.G5E	ENST00000361632		5	gGa/gAa																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514263	69514263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	75	566	0	ENST00000294312.3:c.418C>T	p.Arg140Cys	p.R140C	ENST00000294312	NM_005117.2	140	Cgc/Tgc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77085411	77085411	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	46	332	0	ENST00000356341.3:c.440-1G>A		p.X147_splice	ENST00000356341	NM_002576.4	147																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421795	49421795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	109	649	1	ENST00000301067.7:c.14512C>T	p.Pro4838Ser	p.P4838S	ENST00000301067	NM_003482.3	4838	Cct/Tct																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50479208	50479208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	60	272	0	ENST00000394963.4:c.56C>T	p.Ser19Leu	p.S19L	ENST00000394963	NM_003076.4	19	tCa/tTa																																																																														
POLE	5426	MSKCC	GRCh37	12	133209084	133209085	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	42	411	0	ENST00000320574.5:c.6146_6147delinsTT	p.Thr2049Ile	p.T2049I	ENST00000320574	NM_006231.2	2049	aCC/aTT																																																																														
LATS2	26524	MSKCC	GRCh37	13	21565415	21565416	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	62	493	0	ENST00000382592.4:c.470_471delinsTT	p.Ser157Phe	p.S157F	ENST00000382592	NM_014572.2	157	tCC/tTT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713241	43713241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	87	626	0	ENST00000382044.4:c.4232C>T	p.Ser1411Phe	p.S1411F	ENST00000382044	NM_001141980.1	1411	tCt/tTt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639611	3639611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	100	697	0	ENST00000294008.3:c.4028C>T	p.Pro1343Leu	p.P1343L	ENST00000294008	NM_032444.2	1343	cCt/cTt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346270	89346271	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	32	301	0	ENST00000301030.4:c.6679_6680delinsTT	p.Pro2227Leu	p.P2227L	ENST00000301030	NM_001256183.1	2227	CCg/TTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29483074	29483075	+	inframe_insertion	In_Frame_Ins	INS	-	-	TATTTCCAAATACAAGTTTTCTTTGGTTATAAGCGGCCTTAC			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	34	400	0	ENST00000358273.4:c.173_174insTACTATTTCCAAATACAAGTTTTCTTTGGTTATAAGCGGCCT	p.Ile46_Thr59dup	p.I46_T59dup	ENST00000358273	NM_001042492.2	46	aat/aaTATTTCCAAATACAAGTTTTCTTTGGTTATAAGCGGCCTTACt																																																																														
NF1	4763	MSKCC	GRCh37	17	29654520	29654521	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	32	213	0	ENST00000358273.4:c.5272_5273delinsAA	p.Gly1758Asn	p.G1758N	ENST00000358273	NM_001042492.2	1758	GGt/AAt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78857585	78857586	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	53	471	0	ENST00000306801.3:c.1655_1656delinsGT	p.Ala552Gly	p.A552G	ENST00000306801	NM_020761.2	552	gCC/gGT																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897426	78897426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	68	554	1	ENST00000306801.3:c.2761C>T	p.His921Tyr	p.H921Y	ENST00000306801	NM_020761.2	921	Cac/Tac																																																																														
STK11	6794	MSKCC	GRCh37	19	1220464	1220464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	79	623	1	ENST00000326873.7:c.557C>T	p.Thr186Ile	p.T186I	ENST00000326873	NM_000455.4	186	aCc/aTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302911	15302911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	90	641	0	ENST00000263388.2:c.539C>T	p.Ser180Phe	p.S180F	ENST00000263388	NM_000435.2	180	tCc/tTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18961603	18961603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	70	529	0	ENST00000262803.5:c.736C>T	p.Pro246Ser	p.P246S	ENST00000262803	NM_002911.3	246	Ccc/Tcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210736	36210737	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	62	632	0	ENST00000222270.7:c.487_488delinsTT	p.Pro163Phe	p.P163F	ENST00000222270	NM_014727.1	163	CCt/TTt																																																																														
CIC	23152	MSKCC	GRCh37	19	42797201	42797202	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	80	622	1	ENST00000575354.2:c.3563_3564delinsTT	p.Pro1188Leu	p.P1188L	ENST00000575354	NM_015125.3	1188	cCC/cTT																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881552	111881552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	62	483	0	ENST00000393256.3:c.230C>T	p.Ser77Phe	p.S77F	ENST00000393256	NM_006538.4	77	tCc/tTc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24134070	24134070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	50	366	0	ENST00000263121.7:c.221C>T	p.Pro74Leu	p.P74L	ENST00000263121	NM_003073.3	74	cCt/cTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968303	134968303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	60	461	0	ENST00000398015.3:c.2816C>T	p.Ser939Phe	p.S939F	ENST00000398015	NM_004441.4	939	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612233	189612233	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	65	401	0	ENST00000264731.3:c.1985A>G	p.Asn662Ser	p.N662S	ENST00000264731	NM_003722.4	662	aAc/aGc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356231	66356231	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	67	485	0	ENST00000273854.3:c.1266A>T	p.Lys422Asn	p.K422N	ENST00000273854	NM_004439.5	422	aaA/aaT																																																																														
TET2	54790	MSKCC	GRCh37	4	106156402	106156402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	42	334	0	ENST00000380013.4:c.1303C>T	p.His435Tyr	p.H435Y	ENST00000380013	NM_001127208.2	435	Cac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1294115	1294115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	85	668	1	ENST00000310581.5:c.886C>T	p.His296Tyr	p.H296Y	ENST00000310581	NM_198253.2	296	Cac/Tac																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435838	149435838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	66	593	0	ENST00000286301.3:c.2386G>A	p.Asp796Asn	p.D796N	ENST00000286301	NM_005211.3	796	Gac/Aac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675484	30675485	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AC			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	68	574	1	ENST00000376406.3:c.2871_2872delinsGT	p.Asp957_Gln958delinsGluTer	p.D957_Q958delinsE*	ENST00000376406	NM_014641.2	957	gaCCag/gaGTag																																																																														
HGF	3082	MSKCC	GRCh37	7	81359018	81359018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	55	407	0	ENST00000222390.5:c.943G>A	p.Gly315Ser	p.G315S	ENST00000222390	NM_000601.4	315	Ggc/Agc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68993016	68993017	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	25	339	2	ENST00000288368.4:c.1821_1822delinsTA	p.Leu607_Glu608delinsPheLys	p.L607_E608delinsFK	ENST00000288368	NM_024870.2	607	ttAGaa/ttTAaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69032512	69032513	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	60	433	0	ENST00000288368.4:c.3586_3587delinsAA	p.Gly1196Lys	p.G1196K	ENST00000288368	NM_024870.2	1196	GGa/AAa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317565	1317565	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	43	352	0				ENST00000381566																																																																																	
RBM10	8241	MSKCC	GRCh37	X	47041616	47041616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	74	623	0	ENST00000329236.7:c.1607C>T	p.Thr536Ile	p.T536I	ENST00000329236	NM_001204466.1	536	aCc/aTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412214	63412214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	77	672	1	ENST00000330258.3:c.953C>T	p.Ser318Phe	p.S318F	ENST00000330258	NM_152424.3	318	tCc/tTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938035	76938035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	59	546	0	ENST00000373344.5:c.2713A>G	p.Arg905Gly	p.R905G	ENST00000373344	NM_000489.3	905	Aga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	26	218	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0043572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	13	199	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	28	555	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577045	7577046	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	202	709	0	ENST00000269305.4:c.892dup	p.Glu298GlyfsTer8	p.E298Gfs*8	ENST00000269305	NM_001126112.2	298	gag/gGag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628173	187628195	+	frameshift_variant	Frame_Shift_Del	DEL	GGACTTTCACACGATAATTAGGT	GGACTTTCACACGATAATTAGGT	-			P-0043581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	125	603	0	ENST00000441802.2:c.2787_2809del	p.Pro930ArgfsTer18	p.P930Rfs*18	ENST00000441802	NM_005245.3	929	ccACCTAATTATCGTGTGAAAGTCCga/ccga																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	89	230	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	253	507	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	155	257	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PAK7	0	MSKCC	GRCh37	20	9546721	9546721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	122	234	0	ENST00000353224.5:c.1301C>T	p.Ala434Val	p.A434V	ENST00000353224	NM_177990.2	434	gCg/gTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412941	63412941	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	445	625	0	ENST00000330258.3:c.226G>T	p.Gly76Ter	p.G76*	ENST00000330258	NM_152424.3	76	Gga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	230	340	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790072	40790072	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753667		P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	260	467	2	ENST00000373198.4:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000373198	NM_133170.3	887	Gcc/Acc																																																																														
TET1	80312	MSKCC	GRCh37	10	70446192	70446192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	209	286	0	ENST00000373644.4:c.5132A>G	p.Tyr1711Cys	p.Y1711C	ENST00000373644	NM_030625.2	1711	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0043812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	81	573	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
MGA	23269	MSKCC	GRCh37	15	42059395	42059395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	37	301	0	ENST00000219905.7:c.9115G>A	p.Glu3039Lys	p.E3039K	ENST00000219905	NM_001164273.1	3039	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	91	704	0	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186503816	186503816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	54	423	0	ENST00000323963.5:c.493G>A	p.Asp165Asn	p.D165N	ENST00000323963		165	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112176427	112176428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	44	292	0	ENST00000257430.4:c.5138dup	p.Leu1713PhefsTer3	p.L1713Ffs*3	ENST00000257430	NM_000038.5	1712	-/T																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	269	806	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105709	27105709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	64	373	0	ENST00000324856.7:c.5320G>C	p.Glu1774Gln	p.E1774Q	ENST00000324856	NM_006015.4	1774	Gaa/Caa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	304	891	0	ENST00000171111.5:c.779G>T	p.Arg260Leu	p.R260L	ENST00000171111	NM_203500.1	260	cGa/cTa																																																																														
REL	5966	MSKCC	GRCh37	2	61149011	61149011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	139	322	0	ENST00000295025.8:c.1201C>T	p.His401Tyr	p.H401Y	ENST00000295025	NM_002908.2	401	Cat/Tat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106159	27106159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	111	586	0	ENST00000324856.7:c.5770G>A	p.Glu1924Lys	p.E1924K	ENST00000324856	NM_006015.4	1924	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105796	27105796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	53	465	0	ENST00000324856.7:c.5407G>A	p.Glu1803Lys	p.E1803K	ENST00000324856	NM_006015.4	1803	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105614	27105614	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	103	508	0	ENST00000324856.7:c.5225G>C	p.Arg1742Thr	p.R1742T	ENST00000324856	NM_006015.4	1742	aGa/aCa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105727	27105727	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	60	366	0	ENST00000324856.7:c.5338G>C	p.Glu1780Gln	p.E1780Q	ENST00000324856	NM_006015.4	1780	Gaa/Caa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105895	27105895	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	76	528	0	ENST00000324856.7:c.5506G>C	p.Glu1836Gln	p.E1836Q	ENST00000324856	NM_006015.4	1836	Gag/Cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106166	27106166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	108	576	0	ENST00000324856.7:c.5777G>T	p.Gly1926Val	p.G1926V	ENST00000324856	NM_006015.4	1926	gGa/gTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106279	27106279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	99	657	0	ENST00000324856.7:c.5890G>A	p.Glu1964Lys	p.E1964K	ENST00000324856	NM_006015.4	1964	Gag/Aag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100664	8100664	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	225	813	0	ENST00000346208.3:c.638C>G	p.Ser213Trp	p.S213W	ENST00000346208		213	tCg/tGg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435176	18435176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	113	318	0	ENST00000266497.5:c.161A>G	p.Tyr54Cys	p.Y54C	ENST00000266497		54	tAc/tGc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43705394	43705394	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	260	797	0	ENST00000382044.4:c.5228T>G	p.Met1743Arg	p.M1743R	ENST00000382044	NM_001141980.1	1743	aTg/aGg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134529	2134529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	232	906	1	ENST00000219476.3:c.4306G>A	p.Asp1436Asn	p.D1436N	ENST00000219476	NM_000548.3	1436	Gac/Aac																																																																														
EZH1	2145	MSKCC	GRCh37	17	40859977	40859977	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	290	425	0	ENST00000428826.2:c.1659C>G	p.Asp553Glu	p.D553E	ENST00000428826		553	gaC/gaG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306619	41306619	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	218	740	0	ENST00000373198.4:c.1040T>A	p.Leu347Gln	p.L347Q	ENST00000373198	NM_133170.3	347	cTg/cAg																																																																														
NF2	4771	MSKCC	GRCh37	22	30050650	30050650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	145	325	0	ENST00000338641.4:c.452G>T	p.Gly151Val	p.G151V	ENST00000338641	NM_000268.3	151	gGt/gTt																																																																														
ATR	545	MSKCC	GRCh37	3	142269060	142269060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	184	436	0	ENST00000350721.4:c.2890G>T	p.Val964Leu	p.V964L	ENST00000350721	NM_001184.3	964	Gtg/Ttg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535384	66535384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	127	307	0	ENST00000273854.3:c.77C>G	p.Ala26Gly	p.A26G	ENST00000273854	NM_004439.5	26	gCg/gGg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539015	187539015	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	177	490	0	ENST00000441802.2:c.8725A>G	p.Thr2909Ala	p.T2909A	ENST00000441802	NM_005245.3	2909	Acc/Gcc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562666	176562666	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	190	509	0	ENST00000439151.2:c.562C>G	p.Gln188Glu	p.Q188E	ENST00000439151	NM_022455.4	188	Cag/Gag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030317	180030322	+	protein_altering_variant	In_Frame_Del	DEL	CAGGCC	CAGGCC	GAG			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	387	763	5	ENST00000261937.6:c.3962_3967delinsCTC	p.Arg1321_Glu1323delinsProGln	p.R1321_E1323delinsPQ	ENST00000261937	NM_182925.4	1321	cGGCCTGag/cCTCag																																																																														
HGF	3082	MSKCC	GRCh37	7	81346592	81346592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	87	296	0	ENST00000222390.5:c.1361C>G	p.Thr454Arg	p.T454R	ENST00000222390	NM_000601.4	454	aCg/aGg																																																																														
HGF	3082	MSKCC	GRCh37	7	81399214	81399214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	227	576	1	ENST00000222390.5:c.74C>T	p.Ala25Val	p.A25V	ENST00000222390	NM_000601.4	25	gCc/gTc																																																																														
AR	367	MSKCC	GRCh37	X	66766355	66766355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	38	24	0	ENST00000374690.3:c.1367G>T	p.Gly456Val	p.G456V	ENST00000374690	NM_000044.3	456	gGt/gTt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797845	45797845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	191	569	3	ENST00000372115.3:c.884G>A	p.Arg295His	p.R295H	ENST00000372115	NM_001048171.1	295	cGc/cAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65351945	65351945	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	21	317	0	ENST00000342505.4:c.3G>A	p.Met1?	p.M1?	ENST00000342505	NM_002227.2	1	atG/atA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425330	49425360	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTTCTGCTAGGTTGTCTGGGGGATCCCAA	GGTTTCTGCTAGGTTGTCTGGGGGATCCCAA	-			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	244	664	2	ENST00000301067.7:c.13128_13158del	p.Trp4377ArgfsTer16	p.W4377Rfs*16	ENST00000301067	NM_003482.3	4376	ccTTGGGATCCCCCAGACAACCTAGCAGAAACC/cc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061839	38061839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	282	756	6	ENST00000250448.2:c.150G>A	p.Met50Ile	p.M50I	ENST00000250448	NM_004496.3	50	atG/atA																																																																														
PALB2	79728	MSKCC	GRCh37	16	23614896	23614906	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTACACTGA	CAGTACACTGA	-			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	268	456	6	ENST00000261584.4:c.3435_3445del	p.Gln1146ProfsTer7	p.Q1146Pfs*7	ENST00000261584	NM_024675.3	1145	ggTCAGTGTACTGcc/ggcc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546901	9546901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	293	509	8	ENST00000353224.5:c.1121C>T	p.Pro374Leu	p.P374L	ENST00000353224	NM_177990.2	374	cCg/cTg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31369176	31369176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	352	522	6	ENST00000328111.2:c.160C>T	p.Arg54Ter	p.R54*	ENST00000328111	NM_006892.3	54	Cga/Tga																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202825	128202833	+	inframe_deletion	In_Frame_Del	DEL	CACAGTTGA	CACAGTTGA	-			P-0043905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	378	614	6	ENST00000341105.2:c.887_895del	p.Val296_Cys298del	p.V296_C298del	ENST00000341105	NM_032638.4	296	gTCAACTGTGgg/ggg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	232	479	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0045029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	45	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	79	266	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	36	397	0	ENST00000358485.4:c.1245delT	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16245466	16245466	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	148	258	0	ENST00000375759.3:c.1441C>G	p.Leu481Val	p.L481V	ENST00000375759	NM_015001.2	481	Ctg/Gtg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057727	27057727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	388	522	0	ENST00000324856.7:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000324856	NM_006015.4	479	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059176	27059176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	187	347	0	ENST00000324856.7:c.1813C>T	p.Gln605Ter	p.Q605*	ENST00000324856	NM_006015.4	605	Caa/Taa																																																																														
SESN2	83667	MSKCC	GRCh37	1	28607296	28607296	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	40	532	0	ENST00000253063.3:c.1426A>G	p.Thr476Ala	p.T476A	ENST00000253063	NM_031459.4	476	Acc/Gcc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981272	201981272	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	126	763	0	ENST00000359651.3:c.355del	p.Asp119ThrfsTer36	p.D119Tfs*36	ENST00000359651		117	ctG/ct																																																																														
ATM	472	MSKCC	GRCh37	11	108170499	108170499	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	27	251	0	ENST00000278616.4:c.5064A>G	p.Ile1688Met	p.I1688M	ENST00000278616	NM_000051.3	1688	atA/atG																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118370114	118370114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	128	243	0	ENST00000534358.1:c.6058G>C	p.Glu2020Gln	p.E2020Q	ENST00000534358	NM_005933.3	2020	Gaa/Caa																																																																														
RB1	5925	MSKCC	GRCh37	13	49047495	49047495	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	113	135	0	ENST00000267163.4:c.2490-1G>C		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3781353	3781353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	163	766	1	ENST00000262367.5:c.5012C>T	p.Ala1671Val	p.A1671V	ENST00000262367	NM_004380.2	1671	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	316	603	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	61	568	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	338	736	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37865651	37865651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	1788	552	0	ENST00000269571.5:c.520C>T	p.His174Tyr	p.H174Y	ENST00000269571		174	Cac/Tac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	1617	522	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63526161	63526161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	163	500	1	ENST00000307078.5:c.2465G>A	p.Trp822Ter	p.W822*	ENST00000307078	NM_004655.3	822	tGg/tAg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732339	74732356	+	inframe_deletion	In_Frame_Del	DEL	CCTGGACCGAGACCGGGA	CCTGGACCGAGACCGGGA	-			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	49	346	0	ENST00000359995.5:c.553_570del	p.Arg186_Ser191del	p.R186_S191del	ENST00000359995	NM_001195427.1	185	TCCCGGTCTCGGTCCAGG/-																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356272	66356272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	30	431	0	ENST00000273854.3:c.1225G>A	p.Gly409Ser	p.G409S	ENST00000273854	NM_004439.5	409	Ggc/Agc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	590	302	1				ENST00000310581	NM_198253.2																																																																																
ETV1	2115	MSKCC	GRCh37	7	13946126	13946126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	216	376	0	ENST00000405192.2:c.970G>T	p.Asp324Tyr	p.D324Y	ENST00000405192	NM_001163147.1	324	Gac/Tac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039356	47039358	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0045030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	342	339	0	ENST00000329236.7:c.754_756del	p.Ser252del	p.S252del	ENST00000329236	NM_001204466.1	250	TCC/-																																																																														
ERG	2078	MSKCC	GRCh37	21	39775583	39775583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	76	366	0	ENST00000288319.7:c.437C>T	p.Ala146Val	p.A146V	ENST00000288319	NM_182918.3	146	gCg/gTg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625389	69625389	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199801193		P-0045031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	92	771	0	ENST00000334134.2:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000334134	NM_005247.2	135	cGg/cAg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666438	206666438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	153	528	0	ENST00000367120.3:c.1918G>A	p.Glu640Lys	p.E640K	ENST00000367120	NM_014002.3	640	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420218	49420218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	95	605	0	ENST00000301067.7:c.15531G>A	p.Met5177Ile	p.M5177I	ENST00000301067	NM_003482.3	5177	atG/atA																																																																														
FLT1	2321	MSKCC	GRCh37	13	29007971	29007971	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	19	237	0	ENST00000282397.4:c.798G>A	p.Trp266Ter	p.W266*	ENST00000282397	NM_002019.4	266	tgG/tgA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911328	32911328	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	15	371	0	ENST00000380152.3:c.2836G>C	p.Asp946His	p.D946H	ENST00000380152		946	Gat/Cat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913317	32913317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	19	373	1	ENST00000380152.3:c.4825A>G	p.Thr1609Ala	p.T1609A	ENST00000380152		1609	Act/Gct																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121840	2121840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1284	131	856	0	ENST00000219476.3:c.2002G>T	p.Gly668Trp	p.G668W	ENST00000219476	NM_000548.3	668	Ggg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300089	15300089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	209	598	0	ENST00000263388.2:c.1187C>G	p.Ser396Cys	p.S396C	ENST00000263388	NM_000435.2	396	tCt/tGt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940789	49940789	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	114	670	0	ENST00000296474.3:c.254T>C	p.Leu85Pro	p.L85P	ENST00000296474	NM_002447.2	85	cTg/cCg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163438	32163438	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	109	808	0	ENST00000375023.3:c.5788A>T	p.Met1930Leu	p.M1930L	ENST00000375023	NM_004557.3	1930	Atg/Ttg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922063	39922063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1354	105	713	0	ENST00000378444.4:c.4109C>A	p.Pro1370His	p.P1370H	ENST00000378444	NM_001123385.1	1370	cCt/cAt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227814	53227814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	169	614	0	ENST00000375401.3:c.2374G>A	p.Glu792Lys	p.E792K	ENST00000375401	NM_004187.3	792	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	22	308	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	22	682	0	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																															
TBX3	6926	MSKCC	GRCh37	12	115120855	115120855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	24	573	0	ENST00000257566.3:c.151G>A	p.Ala51Thr	p.A51T	ENST00000257566	NM_016569.3	51	Gcg/Acg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332729	70332729	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	28	444	0	ENST00000373644.4:c.634G>C	p.Glu212Gln	p.E212Q	ENST00000373644	NM_030625.2	212	Gag/Cag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914329	32914329	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	10	365	0	ENST00000380152.3:c.5837C>G	p.Ser1946Ter	p.S1946*	ENST00000380152		1946	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577133	7577133	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	43	573	0	ENST00000269305.4:c.805A>T	p.Ser269Cys	p.S269C	ENST00000269305	NM_001126112.2	269	Agc/Tgc																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428015	33428015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	30	572	0	ENST00000335858.7:c.608G>T	p.Gly203Val	p.G203V	ENST00000335858	NM_133629.2	203	gGg/gTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770631	40770631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	19	289	0	ENST00000373198.4:c.2751G>T	p.Glu917Asp	p.E917D	ENST00000373198	NM_133170.3	917	gaG/gaT																																																																														
SESN1	27244	MSKCC	GRCh37	6	109315790	109315790	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	11	427	0	ENST00000436639.2:c.995T>A	p.Val332Asp	p.V332D	ENST00000436639	NM_014454.2	332	gTt/gAt																																																																														
MYC	4609	MSKCC	GRCh37	8	128750711	128750711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	41	663	0	ENST00000377970.2:c.248G>T	p.Gly83Val	p.G83V	ENST00000377970	NM_002467.4	83	gGg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0045033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	147	328	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0045033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	17	345	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604697	48604697	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	149	353	0	ENST00000342988.3:c.1519A>G	p.Lys507Glu	p.K507E	ENST00000342988	NM_005359.5	507	Aaa/Gaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0045033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	105	593	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31395665	31395665	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	153	591	0	ENST00000328111.2:c.2518C>T	p.Arg840Ter	p.R840*	ENST00000328111	NM_006892.3	840	Cga/Tga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152038	11152038	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	113	475	0	ENST00000344626.4:c.4226C>A	p.Ser1409Ter	p.S1409*	ENST00000344626	NM_003072.3	1409	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578466	7578470	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCC	GTGCC	-			P-0045033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	257	713	0	ENST00000269305.4:c.460_464del	p.Gly154ProfsTer25	p.G154Pfs*25	ENST00000269305	NM_001126112.2	154	GGCACc/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	69	428	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114241	115114241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	42	391	0	ENST00000257566.3:c.976G>C	p.Asp326His	p.D326H	ENST00000257566	NM_016569.3	326	Gat/Cat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831944	72831944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	44	432	0	ENST00000268489.5:c.4637A>G	p.Lys1546Arg	p.K1546R	ENST00000268489	NM_006885.3	1546	aAg/aGg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32189025	32189025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	97	506	0	ENST00000375023.3:c.529C>A	p.Gln177Lys	p.Q177K	ENST00000375023	NM_004557.3	177	Cag/Aag																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128230269	128230269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	38	323	0	ENST00000265960.3:c.1327G>A	p.Ala443Thr	p.A443T	ENST00000265960	NM_001006617.1	443	Gct/Act																																																																														
ATM	472	MSKCC	GRCh37	11	108236215	108236215	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	131	403	0	ENST00000278616.4:c.9151G>C	p.Gly3051Arg	p.G3051R	ENST00000278616	NM_000051.3	3051	Gga/Cga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012228	16012228	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0045039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	33	201	0	ENST00000268712.3:c.2056-2A>C		p.X686_splice	ENST00000268712	NM_006311.3	686																																																																															
MYCN	4613	MSKCC	GRCh37	2	16085839	16085839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	104	414	0	ENST00000281043.3:c.1015G>A	p.Val339Met	p.V339M	ENST00000281043	NM_005378.4	339	Gtg/Atg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61726998	61727332	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCAATGTTTGGGCCATTCTTGTTTCAGTATCTAAAACAAGACATGAAATGTTAATCGCACTTCATTTCTCAAAGGCAAATAAAACAAACTTCAAAGAAATTATGTAATGGATAAAGGCAGGAGTAAGGATAAATCACTTTTCATTTTCTCCTCCTTTATTAAAGGAAGAAATGTGCCACCCTCTTCACCCTACTGGGTAGAAAACAAAACACAAAGTCTTTTATCTTAATCACCGCAGGACCCTTTTCAATTATCCTAATGAAAGGTCCAATCCGTCTAATGGGTCTGTCTGTGTATTAGTATCTGCCTGATAGATATGTAGAAATTATTCTA	GGCCAATGTTTGGGCCATTCTTGTTTCAGTATCTAAAACAAGACATGAAATGTTAATCGCACTTCATTTCTCAAAGGCAAATAAAACAAACTTCAAAGAAATTATGTAATGGATAAAGGCAGGAGTAAGGATAAATCACTTTTCATTTTCTCCTCCTTTATTAAAGGAAGAAATGTGCCACCCTCTTCACCCTACTGGGTAGAAAACAAAACACAAAGTCTTTTATCTTAATCACCGCAGGACCCTTTTCAATTATCCTAATGAAAGGTCCAATCCGTCTAATGGGTCTGTCTGTGTATTAGTATCTGCCTGATAGATATGTAGAAATTATTCTA	-			P-0045039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	26	323	0	ENST00000401558.2:c.409-303_440del		p.X137_splice	ENST00000401558	NM_003400.3	137																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690805	89690805	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0045041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	194	173	0	ENST00000371953.3:c.212G>A	p.Cys71Tyr	p.C71Y	ENST00000371953	NM_000314.4	71	tGt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0045041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	668	432	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
STAG2	10735	MSKCC	GRCh37	X	123196835	123196835	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	177	304	0	ENST00000218089.9:c.1722A>T	p.Leu574Phe	p.L574F	ENST00000218089	NM_001042749.1	574	ttA/ttT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	166	502	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
MITF	4286	MSKCC	GRCh37	3	69928358	69928358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	89	345	0	ENST00000352241.4:c.178C>T	p.Arg60Cys	p.R60C	ENST00000352241	NM_198159.2	60	Cgc/Tgc																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805624	46805624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	53	621	1	ENST00000290295.7:c.332C>T	p.Ala111Val	p.A111V	ENST00000290295	NM_006361.5	111	gCg/gTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8375994	8375994	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	29	268	0	ENST00000356435.5:c.4603T>G	p.Leu1535Val	p.L1535V	ENST00000356435		1535	Tta/Gta																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435403	121435403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	24	632	0	ENST00000257555.6:c.1436C>A	p.Pro479His	p.P479H	ENST00000257555		479	cCt/cAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991985	72991985	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	26	422	0	ENST00000268489.5:c.2060A>T	p.Glu687Val	p.E687V	ENST00000268489	NM_006885.3	687	gAg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	88	144	0	ENST00000257430.4:c.3944del	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/ta																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405170	139405170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	105	671	0	ENST00000277541.6:c.2675G>A	p.Arg892His	p.R892H	ENST00000277541	NM_017617.3	892	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0045045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	100	513	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351548	89351548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	68	570	0	ENST00000301030.4:c.1402C>T	p.Arg468Cys	p.R468C	ENST00000301030	NM_001256183.1	468	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112173847	112173848	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0045045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	28	266	2	ENST00000257430.4:c.2556_2557delinsTT	p.Leu852_Glu853delinsPheTer	p.L852_E853delinsF*	ENST00000257430	NM_000038.5	852	ttGGag/ttTTag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411648	63411648	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	91	565	0	ENST00000330258.3:c.1519G>T	p.Glu507Ter	p.E507*	ENST00000330258	NM_152424.3	507	Gag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724379	117724379	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2243380		P-0045047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	82	443	0	ENST00000368508.3:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000368508	NM_002944.2	167	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0045047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	29	229	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	21	287	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858064	9858064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	49	378	0	ENST00000330684.3:c.3337C>T	p.Pro1113Ser	p.P1113S	ENST00000330684	NM_001134407.1	1113	Cct/Tct																																																																														
KDR	3791	MSKCC	GRCh37	4	55979589	55979589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	61	348	0	ENST00000263923.4:c.858G>T	p.Lys286Asn	p.K286N	ENST00000263923	NM_002253.2	286	aaG/aaT																																																																														
WT1	7490	MSKCC	GRCh37	11	32456449	32456449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	41	457	0	ENST00000332351.3:c.443G>T	p.Gly148Val	p.G148V	ENST00000332351	NM_024426.4	148	gGc/gTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42046695	42046695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	34	335	0	ENST00000219905.7:c.7069G>A	p.Glu2357Lys	p.E2357K	ENST00000219905	NM_001164273.1	2357	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579438	7579445	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGGTG	CGCCGGTG	-			P-0045047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	83	588	0	ENST00000269305.4:c.242_249del	p.Thr81SerfsTer65	p.T81Sfs*65	ENST00000269305	NM_001126112.2	81	aCACCGGCG/a																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790094	40790094	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	76	481	0	ENST00000373198.4:c.2637C>A	p.Tyr879Ter	p.Y879*	ENST00000373198	NM_133170.3	879	taC/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	168	296	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	143	448	0	ENST00000269305.4:c.712T>C	p.Cys238Arg	p.C238R	ENST00000269305	NM_001126112.2	238	Tgt/Cgt																																																																														
JUN	3725	MSKCC	GRCh37	1	59248358	59248359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0045049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	147	325	0	ENST00000371222.2:c.384dup	p.Ser129GlnfsTer181	p.S129Qfs*181	ENST00000371222	NM_002228.3	128	-/C																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	105	378	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256510	115256510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	193	513	3	ENST00000369535.4:c.201G>A	p.Met67Ile	p.M67I	ENST00000369535	NM_002524.4	67	atG/atA																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0045054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	161	859	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	176	272	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66765025	66765025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	248	396	0	ENST00000374690.3:c.37C>T	p.Arg13Trp	p.R13W	ENST00000374690	NM_000044.3	13	Cgg/Tgg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376187	225376187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	120	442	0	ENST00000264414.4:c.767C>T	p.Thr256Met	p.T256M	ENST00000264414	NM_003590.4	256	aCg/aTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41566444	41566445	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0045054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	118	340	0	ENST00000263253.7:c.4323_4324dup	p.Glu1442ValfsTer55	p.E1442Vfs*55	ENST00000263253	NM_001429.3	1441	agt/aGTgt																																																																														
MSH3	4437	MSKCC	GRCh37	5	80083427	80083427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	137	579	0	ENST00000265081.6:c.2479C>T	p.His827Tyr	p.H827Y	ENST00000265081	NM_002439.4	827	Cac/Tac																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651894	36651895	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGAT			P-0045054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	405	763	0	ENST00000244741.5:c.18_22dup	p.Val8GlyfsTer25	p.V8Gfs*25	ENST00000244741	NM_000389.4	6	ggg/gGGGATgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	175	269	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	49047507	49047507	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	55	191	0	ENST00000267163.4:c.2501C>G	p.Ser834Ter	p.S834*	ENST00000267163	NM_000321.2	834	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	530	612	1	ENST00000269305.4:c.857A>T	p.Glu286Val	p.E286V	ENST00000269305	NM_001126112.2	286	gAa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577524	7577524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	429	507	0	ENST00000269305.4:c.757del	p.Thr253ProfsTer92	p.T253Pfs*92	ENST00000269305	NM_001126112.2	253	Acc/cc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138903	64138943	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCCAAAGGGGCCCCCCGCCGAGCCAACGGCCCCCTGCCC	CCTCCAAAGGGGCCCCCCGCCGAGCCAACGGCCCCCTGCCC	-			P-0045056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	114	544	0	ENST00000334205.4:c.2272_2312del	p.Ser758LeufsTer32	p.S758Lfs*32	ENST00000334205	NM_003942.2	757	gCCTCCAAAGGGGCCCCCCGCCGAGCCAACGGCCCCCTGCCC/g																																																																														
BARD1	580	MSKCC	GRCh37	2	215645970	215645970	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0045056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	54	372	0	ENST00000260947.4:c.628del	p.Thr210LeufsTer2	p.T210Lfs*2	ENST00000260947	NM_000465.2	210	Act/ct																																																																														
INHA	3623	MSKCC	GRCh37	2	220439683	220439683	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	52	924	0	ENST00000243786.2:c.536T>A	p.Leu179Gln	p.L179Q	ENST00000243786	NM_002191.3	179	cTg/cAg																																																																														
PARK2	0	MSKCC	GRCh37	6	161807891	161807891	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	155	316	0	ENST00000366898.1:c.1102T>A	p.Cys368Ser	p.C368S	ENST00000366898	NM_004562.2	368	Tgt/Agt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0045058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	52	312	0				ENST00000310581	NM_198253.2																																																																																
WT1	7490	MSKCC	GRCh37	11	32410629	32410629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	101	530	0	ENST00000332351.3:c.1529T>C	p.Met510Thr	p.M510T	ENST00000332351	NM_024426.4	510	aTg/aCg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477070	67477070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	78	383	0	ENST00000327367.4:c.877G>A	p.Gly293Ser	p.G293S	ENST00000327367	NM_005902.3	293	Ggc/Agc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044971	47044971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	151	406	0	ENST00000329236.7:c.2063G>A	p.Arg688His	p.R688H	ENST00000329236	NM_001204466.1	688	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0045058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	73	410	1	ENST00000269305.4:c.783-1G>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212568881	212568881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	23	337	0	ENST00000342788.4:c.1237G>A	p.Asp413Asn	p.D413N	ENST00000342788	NM_005235.2	413	Gac/Aac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098427	47098427	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	78	469	0	ENST00000409792.3:c.6847C>T	p.Gln2283Ter	p.Q2283*	ENST00000409792	NM_014159.6	2283	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112179219	112179219	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	64	236	0	ENST00000257430.4:c.7928T>C	p.Leu2643Pro	p.L2643P	ENST00000257430	NM_000038.5	2643	cTa/cCa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401002	139401002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	113	661	1	ENST00000277541.6:c.3991G>A	p.Gly1331Arg	p.G1331R	ENST00000277541	NM_017617.3	1331	Ggg/Agg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	24	561	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	264	526	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	211	553	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48878184	48878240	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGAGCGAGCAGAGCCGCCGTCGCCTCACGCGGGAAGGGCGCCCCGGGTGTGCGT	AGGTGAGCGAGCAGAGCCGCCGTCGCCTCACGCGGGAAGGGCGCCCCGGGTGTGCGT	-			P-0045096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	35	110	0	ENST00000267163.4:c.137+2_137+58del		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59853804	59853804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	29	409	0	ENST00000259008.2:c.2055G>C	p.Gln685His	p.Q685H	ENST00000259008	NM_032043.2	685	caG/caC																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2489243	2489243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	289	709	0	ENST00000355716.4:c.148G>A	p.Gly50Ser	p.G50S	ENST00000355716	NM_003820.2	50	Ggc/Agc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260291	16260291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	237	529	0	ENST00000375759.3:c.7556C>T	p.Pro2519Leu	p.P2519L	ENST00000375759	NM_015001.2	2519	cCc/cTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432368	432368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	48	176	0	ENST00000399788.2:c.2155C>T	p.Arg719Cys	p.R719C	ENST00000399788	NM_001042603.1	719	Cgc/Tgc																																																																														
RAD52	5893	MSKCC	GRCh37	12	1023656	1023657	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	222	552	1	ENST00000358495.3:c.907_908delinsTT	p.Thr303Phe	p.T303F	ENST00000358495	NM_134424.2	303	ACt/TTt																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037463	12037463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	193	471	0	ENST00000396373.4:c.1094C>T	p.Ser365Phe	p.S365F	ENST00000396373	NM_001987.4	365	tCc/tTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114150	115114150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	327	618	0	ENST00000257566.3:c.1067C>T	p.Ala356Val	p.A356V	ENST00000257566	NM_016569.3	356	gCc/gTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28610104	28610104	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	149	528	0	ENST00000241453.7:c.1386G>A	p.Trp462Ter	p.W462*	ENST00000241453	NM_004119.2	462	tgG/tgA																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135385	30135385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	106	451	1	ENST00000331968.5:c.433C>T	p.Arg145Cys	p.R145C	ENST00000331968	NM_002742.2	145	Cgt/Tgt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554338	81554338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	113	377	0	ENST00000298171.2:c.358G>A	p.Asp120Asn	p.D120N	ENST00000298171	NM_000369.2	120	Gat/Aat																																																																														
MGA	23269	MSKCC	GRCh37	15	42028740	42028741	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	169	529	0	ENST00000219905.7:c.4278_4279delinsAA	p.Met1426_Glu1427delinsIleLys	p.M1426_E1427delinsIK	ENST00000219905	NM_001164273.1	1426	atGGag/atAAag																																																																														
CBFB	865	MSKCC	GRCh37	16	67132676	67132676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	137	519	0	ENST00000412916.2:c.559C>T	p.Arg187Cys	p.R187C	ENST00000412916		187	Cgt/Tgt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836354	89836354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	268	618	0	ENST00000389301.3:c.2395C>T	p.Pro799Ser	p.P799S	ENST00000389301	NM_000135.2	799	Cca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577540	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	293	603	2	ENST00000269305.4:c.741_742delinsTT	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	247	aaCCgg/aaTTgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	295	693	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7978952	7978952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139689690		P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	237	481	0	ENST00000319144.4:c.1615G>A	p.Glu539Lys	p.E539K	ENST00000319144	NM_001139.2	539	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29588770	29588770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	126	380	0	ENST00000358273.4:c.4619C>T	p.Ala1540Val	p.A1540V	ENST00000358273	NM_001042492.2	1540	gCa/gTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281256	15281256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	264	696	2	ENST00000263388.2:c.5000G>A	p.Arg1667His	p.R1667H	ENST00000263388	NM_000435.2	1667	cGc/cAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367953	15367954	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	337	669	4	ENST00000263377.2:c.1372_1373delinsTT	p.Pro458Leu	p.P458L	ENST00000263377	NM_058243.2	458	CCg/TTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945686	17945686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	275	690	0	ENST00000458235.1:c.2174C>T	p.Pro725Leu	p.P725L	ENST00000458235	NM_000215.3	725	cCc/cTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18971769	18971769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	292	574	0	ENST00000262803.5:c.2435C>T	p.Ser812Phe	p.S812F	ENST00000262803	NM_002911.3	812	tCc/tTc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257396	19257397	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	271	789	2	ENST00000162023.5:c.736_737delinsAA	p.Gly246Lys	p.G246K	ENST00000162023		246	GGg/AAg																																																																														
AKT2	208	MSKCC	GRCh37	19	40748472	40748472	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	260	702	0	ENST00000392038.2:c.410A>G	p.Glu137Gly	p.E137G	ENST00000392038	NM_001626.4	137	gAa/gGa																																																																														
CIC	23152	MSKCC	GRCh37	19	42790949	42790949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	392	647	2	ENST00000575354.2:c.94G>T	p.Val32Leu	p.V32L	ENST00000575354	NM_015125.3	32	Gtg/Ttg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714673	52714673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	319	663	0	ENST00000322088.6:c.431G>A	p.Arg144His	p.R144H	ENST00000322088	NM_014225.5	144	cGc/cAc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	372	731	0	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170923	99170923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	310	648	0	ENST00000074304.5:c.1552C>A	p.Leu518Met	p.L518M	ENST00000074304	NM_001134224.1	518	Ctg/Atg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096414	178096414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	193	403	0	ENST00000397062.3:c.917G>A	p.Ser306Asn	p.S306N	ENST00000397062	NM_006164.4	306	aGc/aAc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326544	62326544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	338	783	0	ENST00000508582.2:c.3541C>T	p.Pro1181Ser	p.P1181S	ENST00000508582		1181	Cct/Tct																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713274	30713275	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	226	420	0	ENST00000359013.4:c.674_675delinsTT	p.Thr225Ile	p.T225I	ENST00000359013	NM_001024847.2	225	aCC/aTT																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71015054	71015054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	171	352	0	ENST00000318789.4:c.1876C>T	p.Pro626Ser	p.P626S	ENST00000318789	NM_032682.5	626	Cct/Tct																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259220	89259220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	105	381	0	ENST00000336596.2:c.364C>A	p.Leu122Met	p.L122M	ENST00000336596	NM_005233.5	122	Ctg/Atg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390172	89390172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	93	373	0	ENST00000336596.2:c.921G>T	p.Glu307Asp	p.E307D	ENST00000336596	NM_005233.5	307	gaG/gaT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480459	89480460	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	85	386	0	ENST00000336596.2:c.2296_2297delinsAA	p.Gly766Lys	p.G766K	ENST00000336596	NM_005233.5	766	GGa/AAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55153703	55153703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	158	573	0	ENST00000257290.5:c.2669C>T	p.Ser890Phe	p.S890F	ENST00000257290	NM_006206.4	890	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530954	187530954	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	148	413	0	ENST00000441802.2:c.10068+1G>A		p.X3356_splice	ENST00000441802	NM_005245.3	3356																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540918	187540918	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	135	356	0	ENST00000441802.2:c.6822del	p.Asp2274GlufsTer17	p.D2274Efs*17	ENST00000441802	NM_005245.3	2274	gaC/ga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	239	391	0				ENST00000310581	NM_198253.2																																																																																
PLK2	10769	MSKCC	GRCh37	5	57754607	57754607	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	145	374	0	ENST00000274289.3:c.440A>T	p.His147Leu	p.H147L	ENST00000274289	NM_006622.3	147	cAc/cTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518061	176518061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	314	715	0	ENST00000292408.4:c.559G>A	p.Asp187Asn	p.D187N	ENST00000292408	NM_213647.1	187	Gat/Aat																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520185	176520186	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	245	706	1	ENST00000292408.4:c.1104_1105delinsAA	p.Asp369Asn	p.D369N	ENST00000292408	NM_213647.1	368	acGGac/acAAac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665401	176665401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	233	477	0	ENST00000439151.2:c.4085G>A	p.Gly1362Glu	p.G1362E	ENST00000439151	NM_022455.4	1362	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609813	117609813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	150	547	0	ENST00000368508.3:c.6886G>A	p.Glu2296Lys	p.E2296K	ENST00000368508	NM_002944.2	2296	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686853	117686853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	80	479	0	ENST00000368508.3:c.2864C>T	p.Ser955Leu	p.S955L	ENST00000368508	NM_002944.2	955	tCa/tTa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001331	150001332	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	121	565	1	ENST00000253339.5:c.2272_2273delinsAA	p.Ala758Asn	p.A758N	ENST00000253339		758	GCt/AAt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509438	106509438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	185	639	1	ENST00000359195.3:c.1432G>A	p.Gly478Arg	p.G478R	ENST00000359195	NM_002649.2	478	Gga/Aga																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956723	68956723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	27	465	0	ENST00000288368.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000288368	NM_024870.2	281	Cgg/Tgg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738994	145738995	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	277	628	0	ENST00000428558.2:c.2160_2161delinsTT	p.Arg721Ter	p.R721*	ENST00000428558	NM_004260.3	720	ctCCga/ctTTga																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072544	5072544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	66	405	0	ENST00000381652.3:c.1694G>A	p.Arg565Lys	p.R565K	ENST00000381652	NM_004972.3	565	aGa/aAa																																																																														
CD274	29126	MSKCC	GRCh37	9	5456166	5456166	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	48	229	0	ENST00000381577.3:c.52+1G>A		p.X18_splice	ENST00000381577	NM_014143.3	18																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98229512	98229512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	194	479	0	ENST00000331920.6:c.2446C>T	p.Gln816Ter	p.Q816*	ENST00000331920	NM_000264.3	816	Cag/Tag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98240459	98240459	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	307	372	0	ENST00000331920.6:c.1225C>T	p.Gln409Ter	p.Q409*	ENST00000331920	NM_000264.3	409	Cag/Tag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222430	53222431	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0045098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	298	360	0	ENST00000375401.3:c.4401_4402delinsAA	p.Glu1468Lys	p.E1468K	ENST00000375401	NM_004187.3	1467	ggGGag/ggAAag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	21	644	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
BRCA1	672	MSKCC	GRCh37	17	41209148	41209148	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	40	582	0	ENST00000357654.3:c.5198A>C	p.Asp1733Ala	p.D1733A	ENST00000357654	NM_007294.3	1733	gAt/gCt																																																																														
TET2	54790	MSKCC	GRCh37	4	106156949	106156949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	34	517	0	ENST00000380013.4:c.1850G>A	p.Arg617Lys	p.R617K	ENST00000380013	NM_001127208.2	617	aGg/aAg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149453013	149453013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	24	560	0	ENST00000286301.3:c.933G>C	p.Gln311His	p.Q311H	ENST00000286301	NM_005211.3	311	caG/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	715	566	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412059	63412059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	464	371	0	ENST00000330258.3:c.1108G>A	p.Glu370Lys	p.E370K	ENST00000330258	NM_152424.3	370	Gag/Aag																																																																														
BARD1	580	MSKCC	GRCh37	2	215595163	215595163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	217	353	0	ENST00000260947.4:c.1973G>A	p.Arg658His	p.R658H	ENST00000260947	NM_000465.2	658	cGc/cAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361127	66361127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	108	312	0	ENST00000273854.3:c.1045C>T	p.Pro349Ser	p.P349S	ENST00000273854	NM_004439.5	349	Cca/Tca																																																																														
WT1	7490	MSKCC	GRCh37	11	32456593	32456593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	76	66	0	ENST00000332351.3:c.299C>T	p.Ala100Val	p.A100V	ENST00000332351	NM_024426.4	100	gCg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11118695	11118695	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	214	512	0	ENST00000344626.4:c.2119A>T	p.Ile707Phe	p.I707F	ENST00000344626	NM_003072.3	707	Att/Ttt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46588226	46588226	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	185	389	0	ENST00000263734.3:c.776A>G	p.Asp259Gly	p.D259G	ENST00000263734	NM_001430.4	259	gAc/gGc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638721	176638721	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0045101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	489	581	0	ENST00000439151.2:c.3321T>A	p.Asp1107Glu	p.D1107E	ENST00000439151	NM_022455.4	1107	gaT/gaA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0045119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	1239	491	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78428610	78428610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	147	296	0	ENST00000370768.2:c.1189G>A	p.Glu397Lys	p.E397K	ENST00000370768	NM_003902.3	397	Gaa/Aaa																																																																														
AXL	558	MSKCC	GRCh37	19	41754723	41754723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0045119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	220	540	0	ENST00000301178.4:c.1709A>G	p.Lys570Arg	p.K570R	ENST00000301178	NM_021913.4	570	aAg/aGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	38	383	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	14	387	1	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																														
BLM	641	MSKCC	GRCh37	15	91346819	91346819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140387675		P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	32	355	0	ENST00000355112.3:c.3427G>A	p.Glu1143Lys	p.E1143K	ENST00000355112	NM_000057.2	1143	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	58	512	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	38	317	0	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	53	393	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
AURKA	6790	MSKCC	GRCh37	20	54963246	54963246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	30	273	2	ENST00000312783.6:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000312783	NM_198436.1	3	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	32	361	1	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	38	223	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108205756	108205756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	26	316	0	ENST00000278616.4:c.8071C>T	p.Arg2691Cys	p.R2691C	ENST00000278616	NM_000051.3	2691	Cgc/Tgc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81973635	81973635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	62	470	0	ENST00000359376.3:c.3452C>T	p.Ala1151Val	p.A1151V	ENST00000359376	NM_002661.3	1151	gCc/gTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542861	187542861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	42	305	1	ENST00000441802.2:c.4879C>T	p.Arg1627Ter	p.R1627*	ENST00000441802	NM_005245.3	1627	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41513352	41513352	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	47	522	0	ENST00000263253.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000263253	NM_001429.3	86	Cga/Tga																																																																														
CCND2	894	MSKCC	GRCh37	12	4385357	4385357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	36	290	0	ENST00000261254.3:c.382G>A	p.Asp128Asn	p.D128N	ENST00000261254	NM_001759.3	128	Gac/Aac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934222	39934222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	71	593	0	ENST00000378444.4:c.377C>T	p.Pro126Leu	p.P126L	ENST00000378444	NM_001123385.1	126	cCg/cTg																																																																														
BLM	641	MSKCC	GRCh37	15	91290717	91290717	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	33	286	0	ENST00000355112.3:c.95T>G	p.Phe32Cys	p.F32C	ENST00000355112	NM_000057.2	32	tTt/tGt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404911	404911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	58	434	0	ENST00000399788.2:c.4283G>A	p.Arg1428Gln	p.R1428Q	ENST00000399788	NM_001042603.1	1428	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105688	27105688	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	32	319	0	ENST00000324856.7:c.5299G>T	p.Glu1767Ter	p.E1767*	ENST00000324856	NM_006015.4	1767	Gaa/Taa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707863	43707863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	61	542	1	ENST00000382044.4:c.5018G>T	p.Arg1673Ile	p.R1673I	ENST00000382044	NM_001141980.1	1673	aGa/aTa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048821	180048821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	91	577	3	ENST00000261937.6:c.1741G>A	p.Asp581Asn	p.D581N	ENST00000261937	NM_182925.4	581	Gac/Aac																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52712607	52712607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	28	250	0	ENST00000394830.3:c.145G>A	p.Val49Met	p.V49M	ENST00000394830	NM_018313.4	49	Gtg/Atg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624243	89624243	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	24	153	0	ENST00000371953.3:c.17A>C	p.Lys6Thr	p.K6T	ENST00000371953	NM_000314.4	6	aAa/aCa																																																																														
PGR	5241	MSKCC	GRCh37	11	100912693	100912693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	33	291	0	ENST00000325455.5:c.2629C>A	p.Leu877Ile	p.L877I	ENST00000325455	NM_001202474.3	877	Ctt/Att																																																																														
CCND2	894	MSKCC	GRCh37	12	4383277	4383277	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	41	447	0	ENST00000261254.3:c.71A>G	p.Asp24Gly	p.D24G	ENST00000261254	NM_001759.3	24	gAc/gGc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601306	28601306	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	61	382	0	ENST00000241453.7:c.2126A>C	p.Lys709Thr	p.K709T	ENST00000241453	NM_004119.2	709	aAa/aCa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350825	89350825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	80	575	0	ENST00000301030.4:c.2125G>T	p.Glu709Ter	p.E709*	ENST00000301030	NM_001256183.1	709	Gaa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15976820	15976820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	47	433	0	ENST00000268712.3:c.3734G>A	p.Arg1245Lys	p.R1245K	ENST00000268712	NM_006311.3	1245	aGa/aAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164388	47164388	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	29	240	1	ENST00000409792.3:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000409792	NM_014159.6	580	Gaa/Taa																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99808250	99808250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17850950		P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	51	448	0	ENST00000280892.6:c.439G>A	p.Asp147Asn	p.D147N	ENST00000280892	NM_001130678.1	147	Gat/Aat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31431727	31431727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	53	367	3	ENST00000344624.3:c.3101C>T	p.Ser1034Leu	p.S1034L	ENST00000344624		1034	tCg/tTg																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481556	20481556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	38	244	0	ENST00000346618.3:c.625G>A	p.Glu209Lys	p.E209K	ENST00000346618	NM_001949.4	209	Gaa/Aaa																																																																														
BCL6	604	MSKCC	GRCh37	3	187447739	187447739	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	1096	658	0	ENST00000232014.4:c.454C>G	p.Gln152Glu	p.Q152E	ENST00000232014	NM_001130845.1	152	Caa/Gaa																																																																														
B2M	567	MSKCC	GRCh37	15	45007855	45007855	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	167	401	0	ENST00000558401.1:c.302G>C	p.Arg101Pro	p.R101P	ENST00000558401	NM_004048.2	101	cGt/cCt																																																																														
RB1	5925	MSKCC	GRCh37	13	49027244	49027244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0045121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	179	393	0	ENST00000267163.4:c.1811A>G	p.Asp604Gly	p.D604G	ENST00000267163	NM_000321.2	604	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0045121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	374	616	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448479	49448479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	398	640	0	ENST00000301067.7:c.232G>A	p.Gly78Arg	p.G78R	ENST00000301067	NM_003482.3	78	Ggg/Agg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256050	16256050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	281	577	0	ENST00000375759.3:c.3315G>T	p.Lys1105Asn	p.K1105N	ENST00000375759	NM_015001.2	1105	aaG/aaT																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983074	201983074	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	444	700	0	ENST00000359651.3:c.923C>A	p.Ser308Tyr	p.S308Y	ENST00000359651		308	tCc/tAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118366492	118366492	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	263	476	0	ENST00000534358.1:c.5441A>T	p.Asn1814Ile	p.N1814I	ENST00000534358	NM_005933.3	1814	aAc/aTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863437	57863437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	410	651	0	ENST00000228682.2:c.1532C>A	p.Pro511Gln	p.P511Q	ENST00000228682	NM_005269.2	511	cCa/cAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212522543	212522543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	227	329	0	ENST00000342788.4:c.1882C>A	p.Pro628Thr	p.P628T	ENST00000342788	NM_005235.2	628	Ccc/Acc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213808	66213808	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0045121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	244	489	0	ENST00000273854.3:c.2622T>G	p.Tyr874Ter	p.Y874*	ENST00000273854	NM_004439.5	874	taT/taG																																																																														
TET2	54790	MSKCC	GRCh37	4	106196856	106196856	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0045121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	74	395	0	ENST00000380013.4:c.5189A>T	p.Asp1730Val	p.D1730V	ENST00000380013	NM_001127208.2	1730	gAt/gTt																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650733	48650733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	318	300	0	ENST00000376670.3:c.602C>T	p.Ala201Val	p.A201V	ENST00000376670	NM_002049.3	201	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	71	400	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624275	89624275	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	244	354	0	ENST00000371953.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000371953	NM_000314.4	17	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087548	27087548	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	194	580	1	ENST00000324856.7:c.2122C>T	p.Gln708Ter	p.Q708*	ENST00000324856	NM_006015.4	708	Cag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591259	67591261	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0045122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	73	401	0	ENST00000274335.5:c.1759_1761delAAA	p.Lys587del	p.K587del	ENST00000274335		586	cAAAaa/caa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589607	67589607	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0045122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	36	253	0	ENST00000274335.5:c.1370A>C	p.Gln457Pro	p.Q457P	ENST00000274335		457	cAa/cCa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325882	65325882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	185	477	0	ENST00000342505.4:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000342505	NM_002227.2	414	Cgg/Tgg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40444032	40444032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	214	663	0	ENST00000345506.4:c.328C>T	p.Arg110Trp	p.R110W	ENST00000345506	NM_003152.3	110	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0045123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	103	306	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	188	464	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	126	298	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188854	32188854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	198	547	1	ENST00000375023.3:c.700C>T	p.Arg234Trp	p.R234W	ENST00000375023	NM_004557.3	234	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	74	207	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578254	7578254	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	220	516	1	ENST00000269305.4:c.595G>T	p.Gly199Ter	p.G199*	ENST00000269305	NM_001126112.2	199	Gga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022914	27022942	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	-			P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	22	19	0	ENST00000324856.7:c.31_59del	p.Ser11AlafsTer90	p.S11Afs*90	ENST00000324856	NM_006015.4	7	cCCGCCGCCGCCAGCAGCCTGGGCAACCCG/c																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	264	612	2	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119683	70119683	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	192	443	0	ENST00000245479.2:c.686-1G>T		p.X229_splice	ENST00000245479	NM_000346.3	229																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292591	15292591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0045124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	247	513	2	ENST00000263388.2:c.2588C>T	p.Ser863Leu	p.S863L	ENST00000263388	NM_000435.2	863	tCg/tTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16203161	16203161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	158	382	0	ENST00000375759.3:c.869C>T	p.Thr290Ile	p.T290I	ENST00000375759	NM_015001.2	290	aCc/aTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100877	27100877	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	395	500	0	ENST00000324856.7:c.4159G>C	p.Glu1387Gln	p.E1387Q	ENST00000324856	NM_006015.4	1387	Gag/Cag																																																																														
RET	5979	MSKCC	GRCh37	10	43595928	43595928	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	718	575	0	ENST00000355710.3:c.95C>A	p.Ser32Ter	p.S32*	ENST00000355710	NM_020975.4	32	tCg/tAg																																																																														
PGR	5241	MSKCC	GRCh37	11	100933424	100933424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	155	359	0	ENST00000325455.5:c.1966C>G	p.Leu656Val	p.L656V	ENST00000325455	NM_001202474.3	656	Ctc/Gtc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112942537	112942537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	283	350	0	ENST00000351677.2:c.1751G>T	p.Gly584Val	p.G584V	ENST00000351677	NM_002834.3	584	gGc/gTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436201	110436201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	204	403	1	ENST00000375856.3:c.2200G>A	p.Glu734Lys	p.E734K	ENST00000375856	NM_003749.2	734	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	42035119	42035119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	508	617	0	ENST00000219905.7:c.4961C>T	p.Ser1654Phe	p.S1654F	ENST00000219905	NM_001164273.1	1654	tCt/tTt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041025	42041025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	474	546	1	ENST00000219905.7:c.5403C>G	p.Phe1801Leu	p.F1801L	ENST00000219905	NM_001164273.1	1801	ttC/ttG																																																																														
MGA	23269	MSKCC	GRCh37	15	42041388	42041388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	473	525	0	ENST00000219905.7:c.5583C>G	p.Phe1861Leu	p.F1861L	ENST00000219905	NM_001164273.1	1861	ttC/ttG																																																																														
MGA	23269	MSKCC	GRCh37	15	42041582	42041582	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	419	497	0	ENST00000219905.7:c.5777C>G	p.Ser1926Ter	p.S1926*	ENST00000219905	NM_001164273.1	1926	tCa/tGa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041671	42041671	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	368	450	0	ENST00000219905.7:c.5866C>A	p.Pro1956Thr	p.P1956T	ENST00000219905	NM_001164273.1	1956	Cct/Act																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	487	644	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29556253	29556253	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	294	400	1	ENST00000358273.4:c.2620A>T	p.Lys874Ter	p.K874*	ENST00000358273	NM_001042492.2	874	Aag/Tag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71101768	71101768	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	79	197	0	ENST00000318789.4:c.430C>G	p.Gln144Glu	p.Q144E	ENST00000318789	NM_032682.5	144	Caa/Gaa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138376532	138376532	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	180	429	0	ENST00000289153.2:c.2942G>C	p.Arg981Pro	p.R981P	ENST00000289153	NM_006219.2	981	cGg/cCg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672224	86672224	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	133	253	1	ENST00000274376.6:c.2026C>T	p.Gln676Ter	p.Q676*	ENST00000274376	NM_002890.2	676	Cag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670961	30670961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	126	604	2	ENST00000376406.3:c.5785G>A	p.Asp1929Asn	p.D1929N	ENST00000376406	NM_014641.2	1929	Gat/Aat																																																																														
SMO	6608	MSKCC	GRCh37	7	128843411	128843411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147491841		P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	189	437	3	ENST00000249373.3:c.518G>A	p.Arg173His	p.R173H	ENST00000249373	NM_005631.4	173	cGc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949126	151949126	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0045126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	205	416	0	ENST00000262189.6:c.1519C>G	p.Gln507Glu	p.Q507E	ENST00000262189	NM_170606.2	507	Cag/Gag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			403	12	254	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026078	48026078	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188252826		P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			469	7	290	0	ENST00000234420.5:c.956C>T	p.Thr319Met	p.T319M	ENST00000234420	NM_000179.2	319	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			809	5	482	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			977	9	594	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			780	20	478	0	ENST00000301067.7:c.15536G>A	p.Arg5179His	p.R5179H	ENST00000301067	NM_003482.3	5179	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106561	27106561	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			945	5	522	1	ENST00000324856.7:c.6172G>T	p.Glu2058Ter	p.E2058*	ENST00000324856	NM_006015.4	2058	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630125	187630125	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201488687		P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			685	16	391	0	ENST00000441802.2:c.857A>G	p.Asn286Ser	p.N286S	ENST00000441802	NM_005245.3	286	aAt/aGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945478	151945478	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036946-T07-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	6	540	1	ENST00000262189.6:c.2041G>T	p.Glu681Ter	p.E681*	ENST00000262189	NM_170606.2	681	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027245-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			133	420	645	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931471	131931471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027245-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			351	127	420	2	ENST00000265335.6:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000265335		726	Cgt/Tgt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273231	18273231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027245-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			564	230	665	0	ENST00000222254.8:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000222254	NM_005027.3	342	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690806	89690806	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027245-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			66	176	360	0	ENST00000371953.3:c.213T>G	p.Cys71Trp	p.C71W	ENST00000371953	NM_000314.4	71	tgT/tgG																																																																														
NF1	4763	MSKCC	GRCh37	17	29701173	29701184	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	AAGCTTGCTTGC	AAGCTTGCTTGC	-			P-0027245-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			240	73	262	0	ENST00000358273.4:c.8520_*11del		p.*2840*	ENST00000358273	NM_001042492.2	2840																																																																															
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033218-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	343	978	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223227	41223227	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033218-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	448	554	0	ENST00000357654.3:c.4704del	p.Ser1569AlafsTer32	p.S1569Afs*32	ENST00000357654	NM_007294.3	1568	atC/at																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860326	151860326	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033218-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			551	166	503	0	ENST00000262189.6:c.10336A>T	p.Thr3446Ser	p.T3446S	ENST00000262189	NM_170606.2	3446	Aca/Tca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			164	79	476	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7572986	7572986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	77	441	0	ENST00000269305.4:c.1123C>A	p.Gln375Lys	p.Q375K	ENST00000269305	NM_001126112.2	375	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577103	7577103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	115	687	0	ENST00000269305.4:c.835G>A	p.Gly279Arg	p.G279R	ENST00000269305	NM_001126112.2	279	Ggg/Agg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098965	178098965	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	48	252	0	ENST00000397062.3:c.80A>T	p.Asp27Val	p.D27V	ENST00000397062	NM_006164.4	27	gAt/gTt																																																																														
PAK1	5058	MSKCC	GRCh37	11	77066720	77066722	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	TT			P-0039089-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	26	266	0	ENST00000356341.3:c.763_765delinsAA	p.Glu255LysfsTer6	p.E255Kfs*6	ENST00000356341	NM_002576.4	255	GAG/AA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	133	642	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	133	642	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	133	642	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248749	212248749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	41	268	0	ENST00000342788.4:c.3518C>G	p.Ser1173Cys	p.S1173C	ENST00000342788	NM_005235.2	1173	tCt/tGt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399128	139399128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	161	743	0	ENST00000277541.6:c.5015G>A	p.Arg1672His	p.R1672H	ENST00000277541	NM_017617.3	1672	cGc/cAc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14629110	14629110	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	78	390	0	ENST00000254322.2:c.52G>T	p.Glu18Ter	p.E18*	ENST00000254322	NM_006145.1	18	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578232	7578232	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	300	712	0	ENST00000269305.4:c.617delT	p.Leu206TrpfsTer41	p.L206Wfs*41	ENST00000269305	NM_001126112.2	206	tTg/tg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118382708	118382708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	70	337	1	ENST00000534358.1:c.11114C>T	p.Ser3705Leu	p.S3705L	ENST00000534358	NM_005933.3	3705	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416495	49416495	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			643	266	615	0	ENST00000301067.7:c.16216del	p.Ile5406SerfsTer12	p.I5406Sfs*12	ENST00000301067	NM_003482.3	5406	Atc/tc																																																																														
APC	324	MSKCC	GRCh37	5	112174434	112174434	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	59	236	0	ENST00000257430.4:c.3143G>C	p.Arg1048Thr	p.R1048T	ENST00000257430	NM_000038.5	1048	aGa/aCa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131945040	131945040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039885-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			110	26	194	0	ENST00000265335.6:c.2988G>C	p.Lys996Asn	p.K996N	ENST00000265335		996	aaG/aaC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	217	294	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108225575	108225575	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	45	354	0	ENST00000278616.4:c.8824C>T	p.Gln2942Ter	p.Q2942*	ENST00000278616	NM_000051.3	2942	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875055	151875055	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	41	196	0	ENST00000262189.6:c.7483C>T	p.Gln2495Ter	p.Q2495*	ENST00000262189	NM_170606.2	2495	Caa/Taa																																																																														
BLM	641	MSKCC	GRCh37	15	91312408	91312408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	43	296	0	ENST00000355112.3:c.2353G>A	p.Glu785Lys	p.E785K	ENST00000355112	NM_000057.2	785	Gag/Aag																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166279	118166279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	58	353	0	ENST00000369448.3:c.789C>G	p.Ile263Met	p.I263M	ENST00000369448	NM_017709.3	263	atC/atG																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466528	120466528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			801	68	549	0	ENST00000256646.2:c.4591G>A	p.Gly1531Arg	p.G1531R	ENST00000256646	NM_024408.3	1531	Ggg/Agg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426715	49426715	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	79	298	0	ENST00000301067.7:c.11773C>T	p.Gln3925Ter	p.Q3925*	ENST00000301067	NM_003482.3	3925	Caa/Taa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26911703	26911703	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	14	198	0	ENST00000381527.3:c.129-1G>A		p.X43_splice	ENST00000381527	NM_001260.1	43																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256925	41256925	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	72	481	2	ENST00000357654.3:c.261del	p.Ile89SerfsTer30	p.I89Sfs*30	ENST00000357654	NM_007294.3	87	ttG/tt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276837	15276837	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			855	92	720	0	ENST00000263388.2:c.5428G>C	p.Glu1810Gln	p.E1810Q	ENST00000263388	NM_000435.2	1810	Gag/Cag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698192	47698192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	13	228	0	ENST00000233146.2:c.1750A>G	p.Ile584Val	p.I584V	ENST00000233146	NM_000251.2	584	Att/Gtt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719442	190719442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			122	25	241	1	ENST00000441310.2:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000441310	NM_000534.4	482	Gag/Aag																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143029249	143029249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	49	185	0	ENST00000262992.4:c.2371G>A	p.Asp791Asn	p.D791N	ENST00000262992	NM_001101669.1	791	Gat/Aat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922749	44922749	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	98	204	0	ENST00000377967.4:c.1610C>G	p.Ser537Ter	p.S537*	ENST00000377967	NM_021140.2	537	tCa/tGa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039901	47039901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	222	358	0	ENST00000329236.7:c.1010C>A	p.Ser337Ter	p.S337*	ENST00000329236	NM_001204466.1	337	tCa/tAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123210315	123210315	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			64	28	168	0	ENST00000218089.9:c.2667T>A	p.Tyr889Ter	p.Y889*	ENST00000218089	NM_001042749.1	889	taT/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	34	753	1	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	50	888	1	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177068	56177068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	10	284	0	ENST00000399503.3:c.2338G>A	p.Asp780Asn	p.D780N	ENST00000399503	NM_005921.1	780	Gat/Aat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041585	47041585	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	33	395	0	ENST00000329236.7:c.1576C>T	p.Gln526Ter	p.Q526*	ENST00000329236	NM_001204466.1	526	Cag/Tag																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225684	26225686	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0044998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	145	523	0	ENST00000360408.1:c.305_307del	p.Val102del	p.V102del	ENST00000360408	NM_003532.2	101	tTGGtg/ttg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905576	50905576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	224	829	0	ENST00000440232.2:c.704G>A	p.Gly235Asp	p.G235D	ENST00000440232	NM_002691.3	235	gGc/gAc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	47	470	0	ENST00000347630.2:c.305T>C	p.Phe102Ser	p.F102S	ENST00000347630	NM_001007230.1	102	tTc/tCc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779205	3779205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	22	587	0	ENST00000262367.5:c.5843C>T	p.Pro1948Leu	p.P1948L	ENST00000262367	NM_004380.2	1948	cCg/cTg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112940010	112940024	+	inframe_deletion	In_Frame_Del	DEL	TGGAGATCAGAGCCC	TGGAGATCAGAGCCC	-			P-0044899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	83	712	0	ENST00000351677.2:c.1663_1677del	p.Gly555_Pro559del	p.G555_P559del	ENST00000351677	NM_002834.3	554	agTGGAGATCAGAGCCCt/agt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0044900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	46	426	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	56	449	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	56	449	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	56	449	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	237	810	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	214	712	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	174	637	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	101	264	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665015	138665015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	54	152	0	ENST00000330315.3:c.550G>A	p.Asp184Asn	p.D184N	ENST00000330315	NM_023067.3	184	Gac/Aac																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815776	32815776	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	118	686	0	ENST00000354258.4:c.1840C>G	p.Leu614Val	p.L614V	ENST00000354258	NM_000593.5	614	Ctg/Gtg																																																																														
ATRX	546	MSKCC	GRCh37	X	76813029	76813029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	37	224	0	ENST00000373344.5:c.6592C>T	p.His2198Tyr	p.H2198Y	ENST00000373344	NM_000489.3	2198	Cat/Tat																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115272884	115272884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	58	463	0	ENST00000438362.2:c.1489G>A	p.Glu497Lys	p.E497K	ENST00000438362	NM_001242891.1	497	Gag/Aag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100450	8100450	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1547	191	775	0	ENST00000346208.3:c.424T>C	p.Ser142Pro	p.S142P	ENST00000346208		142	Tcg/Ccg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742857	17742857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	200	753	0	ENST00000250003.3:c.765C>G	p.Ile255Met	p.I255M	ENST00000250003	NM_002478.4	255	atC/atG																																																																														
ATM	472	MSKCC	GRCh37	11	108119829	108119829	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	37	175	0	ENST00000278616.4:c.1235G>C	p.Trp412Ser	p.W412S	ENST00000278616	NM_000051.3	412	tGg/tCg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362546	118362546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	178	397	0	ENST00000534358.1:c.4907G>T	p.Arg1636Leu	p.R1636L	ENST00000534358	NM_005933.3	1636	cGa/cTa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29068953	29068953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	41	267	0	ENST00000282397.4:c.28C>A	p.Leu10Met	p.L10M	ENST00000282397	NM_002019.4	10	Ctg/Atg																																																																														
CDH1	999	MSKCC	GRCh37	16	68867272	68867272	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	137	490	0	ENST00000261769.5:c.2519C>G	p.Ser840Cys	p.S840C	ENST00000261769	NM_004360.3	840	tCc/tGc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40858148	40858148	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	820	678	0	ENST00000428826.2:c.1716T>A	p.Cys572Ter	p.C572*	ENST00000428826		572	tgT/tgA																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799528	72799528	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	222	552	0	ENST00000325599.8:c.1641G>C	p.Lys547Asn	p.K547N	ENST00000325599	NM_018130.2	547	aaG/aaC																																																																														
RASA1	5921	MSKCC	GRCh37	5	86658371	86658371	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	36	104	0	ENST00000274376.6:c.1336C>T	p.Gln446Ter	p.Q446*	ENST00000274376	NM_002890.2	446	Caa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670004	86670004	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	59	197	0	ENST00000274376.6:c.1801G>T	p.Glu601Ter	p.E601*	ENST00000274376	NM_002890.2	601	Gaa/Taa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467771	50467771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	380	524	0	ENST00000331340.3:c.1006G>A	p.Gly336Ser	p.G336S	ENST00000331340	NM_006060.4	336	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	235	347	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ATM	472	MSKCC	GRCh37	11	108213974	108213974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	161	323	0	ENST00000278616.4:c.8294G>T	p.Gly2765Val	p.G2765V	ENST00000278616	NM_000051.3	2765	gGt/gTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038858	47038858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	261	734	1	ENST00000329236.7:c.634C>T	p.Gln212Ter	p.Q212*	ENST00000329236	NM_001204466.1	212	Cag/Tag																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115282474	115282474	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	106	441	0	ENST00000438362.2:c.176A>T	p.His59Leu	p.H59L	ENST00000438362	NM_001242891.1	59	cAt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426663	49426689	+	inframe_deletion	In_Frame_Del	DEL	TGTTGAAGCTGCTGCTGCTGTTGCTGC	TGTTGAAGCTGCTGCTGCTGTTGCTGC	-			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	36	418	0	ENST00000301067.7:c.11799_11825del	p.Gln3939_Gln3947del	p.Q3939_Q3947del	ENST00000301067	NM_003482.3	3933	caGCAGCAACAGCAGCAGCAGCTTCAACAa/caa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566216	95566216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	150	540	0	ENST00000343455.3:c.4107G>A	p.Met1369Ile	p.M1369I	ENST00000343455	NM_177438.2	1369	atG/atA																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420335	88420335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	64	420	2	ENST00000360948.2:c.2351C>A	p.Thr784Asn	p.T784N	ENST00000360948	NM_001012338.2	784	aCc/aAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820622	3820622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	181	754	0	ENST00000262367.5:c.2829G>T	p.Gln943His	p.Q943H	ENST00000262367	NM_004380.2	943	caG/caT																																																																														
STK11	6794	MSKCC	GRCh37	19	1207044	1207073	+	inframe_deletion	In_Frame_Del	DEL	GCTCATCGGCAAGTACCTGATGGGGGACCT	GCTCATCGGCAAGTACCTGATGGGGGACCT	-			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	405	725	0	ENST00000326873.7:c.135_164del	p.Ile46_Leu55del	p.I46_L55del	ENST00000326873	NM_000455.4	44	aaGCTCATCGGCAAGTACCTGATGGGGGACCTg/aag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18272816	18272816	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	430	626	0	ENST00000222254.8:c.856A>C	p.Lys286Gln	p.K286Q	ENST00000222254	NM_005027.3	286	Aag/Cag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18974251	18974251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	326	473	1	ENST00000262803.5:c.2605G>T	p.Gly869Cys	p.G869C	ENST00000262803	NM_002911.3	869	Ggc/Tgc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082571	16082571	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	85	377	0	ENST00000281043.3:c.385G>C	p.Ala129Pro	p.A129P	ENST00000281043	NM_005378.4	129	Gcc/Ccc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422375	225422375	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	215	351	0	ENST00000264414.4:c.264+1G>C		p.X88_splice	ENST00000264414	NM_003590.4	88																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434171	12434171	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	118	407	0	ENST00000287820.6:c.539G>C	p.Cys180Ser	p.C180S	ENST00000287820	NM_015869.4	180	tGt/tCt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459846	149459846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	243	691	0	ENST00000286301.3:c.361C>A	p.Gln121Lys	p.Q121K	ENST00000286301	NM_005211.3	121	Cag/Aag																																																																														
ABL1	25	MSKCC	GRCh37	9	133759379	133759379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	369	661	0	ENST00000318560.5:c.1702G>T	p.Val568Leu	p.V568L	ENST00000318560	NM_005157.4	568	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	163	779	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	188	466	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120732	94120732	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	42	421	0	ENST00000369303.4:c.319A>T	p.Arg107Trp	p.R107W	ENST00000369303	NM_004440.3	107	Agg/Tgg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675691	30675691	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	232	909	0	ENST00000376406.3:c.2665A>G	p.Ser889Gly	p.S889G	ENST00000376406	NM_014641.2	889	Agt/Ggt																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	266	706	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	310	654	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	117	819	3	ENST00000291552.4:c.648_653delCGGTGG	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																														
NF2	4771	MSKCC	GRCh37	22	30051652	30051652	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	147	316	0	ENST00000338641.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000338641	NM_000268.3	196	Cga/Tga																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	118	402	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204992	128204992	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	274	758	0	ENST00000341105.2:c.449del	p.Gly150GlufsTer68	p.G150Efs*68	ENST00000341105	NM_032638.4	150	gGa/ga																																																																														
RB1	5925	MSKCC	GRCh37	13	48916840	48916841	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	205	295	0	ENST00000267163.4:c.371_372del	p.Ile124ArgfsTer6	p.I124Rfs*6	ENST00000267163	NM_000321.2	124	ATa/a																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672317	86672317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	171	392	2	ENST00000274376.6:c.2119C>T	p.Arg707Cys	p.R707C	ENST00000274376	NM_002890.2	707	Cgt/Tgt																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39325125	39325125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	237	564	0	ENST00000373001.3:c.194T>C	p.Leu65Pro	p.L65P	ENST00000373001	NM_022157.3	65	cTg/cCg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666693	206666693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	204	680	0	ENST00000367120.3:c.2027G>A	p.Arg676Gln	p.R676Q	ENST00000367120	NM_014002.3	676	cGa/cAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920419	114920419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	214	528	0	ENST00000543371.1:c.1360G>C	p.Asp454His	p.D454H	ENST00000543371	NM_001198531.1	454	Gac/Cac																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992080	11992080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	93	259	0	ENST00000396373.4:c.170A>G	p.Gln57Arg	p.Q57R	ENST00000396373	NM_001987.4	57	cAg/cGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446401	49446401	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	185	645	0	ENST00000301067.7:c.1204A>T	p.Thr402Ser	p.T402S	ENST00000301067	NM_003482.3	402	Acc/Tcc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495517	56495517	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	87	611	0	ENST00000267101.3:c.3707G>C	p.Gly1236Ala	p.G1236A	ENST00000267101	NM_001982.3	1236	gGc/gCc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830549	72830549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	309	586	1	ENST00000268489.5:c.6032C>T	p.Pro2011Leu	p.P2011L	ENST00000268489	NM_006885.3	2011	cCt/cTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244589	41244589	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	291	600	0	ENST00000357654.3:c.2959A>G	p.Lys987Glu	p.K987E	ENST00000357654	NM_007294.3	987	Aag/Gag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247935	10247935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	53	654	0	ENST00000340748.4:c.4267G>A	p.Ala1423Thr	p.A1423T	ENST00000340748		1423	Gcc/Acc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091773	29091773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	75	570	0	ENST00000328354.6:c.1184T>C	p.Val395Ala	p.V395A	ENST00000328354	NM_007194.3	395	gTt/gCt																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664964	138664964	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	112	268	0	ENST00000330315.3:c.601A>T	p.Asn201Tyr	p.N201Y	ENST00000330315	NM_023067.3	201	Aac/Tac																																																																														
PMS2	5395	MSKCC	GRCh37	7	6038807	6038807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	59	622	0	ENST00000265849.7:c.637C>T	p.Pro213Ser	p.P213S	ENST00000265849	NM_000535.5	213	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041714-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	547	771	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73345058	73345058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041714-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	110	261	0	ENST00000377767.4:c.1739G>T	p.Ser580Ile	p.S580I	ENST00000377767	NM_014953.3	580	aGt/aTt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041714-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	271	481	0	ENST00000347630.2:c.393G>T	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgT																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53243966	53243966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041714-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			861	161	335	1	ENST00000375401.3:c.1027G>A	p.Asp343Asn	p.D343N	ENST00000375401	NM_004187.3	343	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002855	69002855	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041714-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1274	82	315	0	ENST00000288368.4:c.2155A>C	p.Ile719Leu	p.I719L	ENST00000288368	NM_024870.2	719	Att/Ctt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247149	53247149	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0041714-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	73	154	0	ENST00000375401.3:c.352-1G>C		p.X118_splice	ENST00000375401	NM_004187.3	118																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0043972-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	51	407	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968597	55968597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34038364		P-0043972-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			788	87	529	0	ENST00000263923.4:c.2066C>T	p.Thr689Met	p.T689M	ENST00000263923	NM_002253.2	689	aCg/aTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038841	47038844	+	frameshift_variant	Frame_Shift_Del	DEL	CCTC	CCTC	-			P-0043972-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	68	367	0	ENST00000329236.7:c.619_622del	p.Ser207LysfsTer23	p.S207Kfs*23	ENST00000329236	NM_001204466.1	206	gCCTCc/gc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	28	472	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061845	38061862	+	inframe_deletion	In_Frame_Del	DEL	CATGTAGGTGTTCATGGA	CATGTAGGTGTTCATGGA	-			P-0044880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	42	678	1	ENST00000250448.2:c.127_144del	p.Ser43_Met48del	p.S43_M48del	ENST00000250448	NM_004496.3	43	TCCATGAACACCTACATG/-																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940157	71940157	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	210	614	0	ENST00000298229.2:c.542T>C	p.Val181Ala	p.V181A	ENST00000298229	NM_001567.3	181	gTc/gCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	344	505	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0017825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	145	375	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435780	56435780	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	202	296	0	ENST00000407977.2:c.1357G>T	p.Glu453Ter	p.E453*	ENST00000407977		453	Gaa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0017825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	44	139	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0017825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	44	139	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257644	16257644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	191	848	0	ENST00000375759.3:c.4909G>A	p.Val1637Ile	p.V1637I	ENST00000375759	NM_015001.2	1637	Gtt/Att																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	159	828	0	ENST00000371953.3:c.70G>T	p.Asp24Tyr	p.D24Y	ENST00000371953	NM_000314.4	24	Gac/Tac																																																																														
PGR	5241	MSKCC	GRCh37	11	100999303	100999303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	211	1083	1	ENST00000325455.5:c.499C>T	p.Arg167Trp	p.R167W	ENST00000325455	NM_001202474.3	167	Cgg/Tgg																																																																														
MGA	23269	MSKCC	GRCh37	15	42028518	42028518	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	191	758	0	ENST00000219905.7:c.4056G>C	p.Leu1352Phe	p.L1352F	ENST00000219905	NM_001164273.1	1352	ttG/ttC																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346759	89346759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	125	618	0	ENST00000301030.4:c.6191C>T	p.Ser2064Phe	p.S2064F	ENST00000301030	NM_001256183.1	2064	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	419	997	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29588778	29588778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	94	513	0	ENST00000358273.4:c.4627C>G	p.Leu1543Val	p.L1543V	ENST00000358273	NM_001042492.2	1543	Ctt/Gtt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37649096	37649096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	182	782	0	ENST00000447079.4:c.2201G>C	p.Gly734Ala	p.G734A	ENST00000447079	NM_015083.1	734	gGa/gCa																																																																														
YES1	7525	MSKCC	GRCh37	18	751775	751775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	134	854	0	ENST00000314574.4:c.301G>C	p.Asp101His	p.D101H	ENST00000314574	NM_005433.3	101	Gat/Cat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218092	36218092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	152	617	0	ENST00000222270.7:c.4039G>A	p.Asp1347Asn	p.D1347N	ENST00000222270	NM_014727.1	1347	Gac/Aac																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027797	48027797	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	162	611	0	ENST00000234420.5:c.2675C>G	p.Ser892Cys	p.S892C	ENST00000234420	NM_000179.2	892	tCt/tGt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589850	212589850	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	184	1080	0	ENST00000342788.4:c.692A>G	p.His231Arg	p.H231R	ENST00000342788	NM_005235.2	231	cAt/cGt																																																																														
EP300	2033	MSKCC	GRCh37	22	41574817	41574817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	205	1015	1	ENST00000263253.7:c.7102G>A	p.Asp2368Asn	p.D2368N	ENST00000263253	NM_001429.3	2368	Gac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	257	738	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185184635	185184635	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	132	519	0	ENST00000265026.3:c.1527G>C	p.Lys509Asn	p.K509N	ENST00000265026	NM_004721.4	509	aaG/aaC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295040	1295040	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	29	158	1	ENST00000310581.5:c.65T>A	p.Leu22Gln	p.L22Q	ENST00000310581	NM_198253.2	22	cTg/cAg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515594	31515594	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	52	619	0	ENST00000344624.3:c.1025A>T	p.Asp342Val	p.D342V	ENST00000344624		342	gAt/gTt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552883	106552883	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1316	230	1058	0	ENST00000369096.4:c.848T>G	p.Phe283Cys	p.F283C	ENST00000369096	NM_001198.3	283	tTt/tGt																																																																														
FYN	2534	MSKCC	GRCh37	6	112035641	112035641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	80	677	0	ENST00000368678.4:c.253A>G	p.Thr85Ala	p.T85A	ENST00000368678		85	Aca/Gca																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030873	69030873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	200	537	0	ENST00000288368.4:c.3415G>A	p.Asp1139Asn	p.D1139N	ENST00000288368	NM_024870.2	1139	Gac/Aac																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101911569	101911569	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	148	777	0	ENST00000374994.4:c.1494G>C	p.Gln498His	p.Q498H	ENST00000374994	NM_004612.2	498	caG/caC																																																																														
FAM58A	0	MSKCC	GRCh37	X	152864439	152864439	+	synonymous_variant	Silent	SNP	C	C	A			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	61	148	0	ENST00000406277.2:c.87G>T	p.Ala29=	p.A29=	ENST00000406277	NM_152274.4	29	gcG/gcT																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023078	150023095	+	frameshift_variant	Frame_Shift_Del	DEL	GGATCTTCGGTTGACATT	GGATCTTCGGTTGACATT	A			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	168	1005	0	ENST00000253339.5:c.168_185delinsT	p.Lys56AsnfsTer15	p.K56Nfs*15	ENST00000253339		56	aaAATGTCAACCGAAGATCCt/aaTt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939269	71939271	+	frameshift_variant	Frame_Shift_Del	DEL	CTG	CTG	T			P-0020591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	225	1060	0	ENST00000298229.2:c.218_220delinsT	p.Pro73LeufsTer24	p.P73Lfs*24	ENST00000298229	NM_001567.3	73	cCTGat/cTat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	296	779	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	440	820	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	496	831	0	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910801	114910801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	161	750	1	ENST00000543371.1:c.920C>T	p.Thr307Met	p.T307M	ENST00000543371	NM_001198531.1	307	aCg/aTg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154444	2154444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	118	729	1	ENST00000434045.2:c.484C>T	p.Pro162Ser	p.P162S	ENST00000434045	NM_001127598.1	162	Ccc/Tcc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	475197	475203	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAAGC	CCCAAGC	-			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	112	911	4	ENST00000399788.2:c.434_440del	p.Arg145HisfsTer12	p.R145Hfs*12	ENST00000399788	NM_001042603.1	145	cGCTTGGGa/ca																																																																														
CCND2	894	MSKCC	GRCh37	12	4383360	4383360	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	258	769	0	ENST00000261254.3:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000261254	NM_001759.3	52	Caa/Taa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2135322	2135322	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	243	720	0	ENST00000219476.3:c.4661A>G	p.Gln1554Arg	p.Q1554R	ENST00000219476	NM_000548.3	1554	cAg/cGg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554420	63554420	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	153	737	0	ENST00000307078.5:c.319A>T	p.Thr107Ser	p.T107S	ENST00000307078	NM_004655.3	107	Acc/Tcc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610094	10610094	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	440	820	0	ENST00000171111.5:c.616T>A	p.Tyr206Asn	p.Y206N	ENST00000171111	NM_203500.1	206	Tac/Aac																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128015220	128015220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	383	668	1	ENST00000285398.2:c.2301G>T	p.Lys767Asn	p.K767N	ENST00000285398	NM_000122.1	767	aaG/aaT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527748	157527760	+	frameshift_variant	Frame_Shift_Del	DEL	GACACCACCGAGC	GACACCACCGAGC	-			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	234	609	0	ENST00000346085.5:c.5473_5485del	p.Asp1825ThrfsTer22	p.D1825Tfs*22	ENST00000346085	NM_020732.3	1825	GACACCACCGAGCac/ac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2949690	2949690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	305	856	0	ENST00000396946.4:c.3254G>T	p.Arg1085Met	p.R1085M	ENST00000396946	NM_032415.4	1085	aGg/aTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81339462	81339463	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	GA			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	164	488	2	ENST00000222390.5:c.1541_1541+1delinsTC		p.X514_splice	ENST00000222390	NM_000601.4	514																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106526602	106526602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	208	589	0	ENST00000359195.3:c.2895C>A	p.Phe965Leu	p.F965L	ENST00000359195	NM_002649.2	965	ttC/ttA																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737126	145737126	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	317	811	1	ENST00000428558.2:c.3440T>A	p.Leu1147Gln	p.L1147Q	ENST00000428558	NM_004260.3	1147	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0021014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1252	123	1142	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	226	1042	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	139	1123	2	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310820	123310820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	116	1065	2	ENST00000358487.5:c.608G>A	p.Arg203His	p.R203H	ENST00000358487	NM_000141.4	203	cGc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76814303	76814306	+	frameshift_variant	Frame_Shift_Del	DEL	ATAA	ATAA	-			P-0021053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	75	649	0	ENST00000373344.5:c.6338_6341del	p.Phe2113SerfsTer9	p.F2113Sfs*9	ENST00000373344	NM_000489.3	2113	tTTATc/tc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483931	212483931	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs182073178		P-0021053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	108	1115	0	ENST00000342788.4:c.2272G>T	p.Gly758Cys	p.G758C	ENST00000342788	NM_005235.2	758	Ggt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108198448	108198448	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	92	856	0	ENST00000278616.4:c.7052A>G	p.Glu2351Gly	p.E2351G	ENST00000278616	NM_000051.3	2351	gAa/gGa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	441034	441034	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	52	767	0	ENST00000399788.2:c.1724A>C	p.Asn575Thr	p.N575T	ENST00000399788	NM_001042603.1	575	aAc/aCc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425085	49425095	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAGTAGCTT	CGGAGTAGCTT	-			P-0021053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	88	1189	0	ENST00000301067.7:c.13393_13403del	p.Lys4465GlyfsTer18	p.K4465Gfs*18	ENST00000301067	NM_003482.3	4465	AAGCTACTCCGg/g																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514746	103514746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	112	614	0	ENST00000355739.4:c.1247C>G	p.Ala416Gly	p.A416G	ENST00000355739	NM_000123.3	416	gCa/gGa																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2636833	2636833	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	52	1152	1	ENST00000342085.4:c.1282T>G	p.Leu428Val	p.L428V	ENST00000342085	NM_002613.4	428	Tta/Gta																																																																														
YES1	7525	MSKCC	GRCh37	18	736963	736963	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0021053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	53	624	0	ENST00000314574.4:c.1138-2A>T		p.X380_splice	ENST00000314574	NM_005433.3	380																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	387	510	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1279522	1279522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1275	217	731	0	ENST00000310581.5:c.2014C>T	p.Arg672Cys	p.R672C	ENST00000310581	NM_198253.2	672	Cgc/Tgc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376135	225376135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	140	424	0	ENST00000264414.4:c.819G>A	p.Met273Ile	p.M273I	ENST00000264414	NM_003590.4	273	atG/atA																																																																														
APC	324	MSKCC	GRCh37	5	112170682	112170682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	96	358	0	ENST00000257430.4:c.1778G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tGg/tAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023073	27023076	+	frameshift_variant	Frame_Shift_Del	DEL	GCCC	GCCC	-			P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	45	74	0	ENST00000324856.7:c.179_182del	p.Gly60AlafsTer40	p.G60Afs*40	ENST00000324856	NM_006015.4	60	gGCCCc/gc																																																																														
TP63	8626	MSKCC	GRCh37	3	189607188	189607188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	175	655	0	ENST00000264731.3:c.1567C>G	p.Gln523Glu	p.Q523E	ENST00000264731	NM_003722.4	523	Cag/Gag																																																																														
HGF	3082	MSKCC	GRCh37	7	81392053	81392053	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043977-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	49	230	0	ENST00000222390.5:c.224C>G	p.Thr75Ser	p.T75S	ENST00000222390	NM_000601.4	75	aCt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0044743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	196	510	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120785275	120785275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	176	539	1	ENST00000257552.2:c.833C>T	p.Ala278Val	p.A278V	ENST00000257552	NM_002442.3	278	gCg/gTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42058462	42058462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	48	348	0	ENST00000219905.7:c.8182C>A	p.Pro2728Thr	p.P2728T	ENST00000219905	NM_001164273.1	2728	Cca/Aca																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602852	10602852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1471	257	760	0	ENST00000171111.5:c.726G>C	p.Glu242Asp	p.E242D	ENST00000171111	NM_203500.1	242	gaG/gaC																																																																														
REL	5966	MSKCC	GRCh37	2	61147720	61147720	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	55	226	0	ENST00000295025.8:c.1030G>C	p.Glu344Gln	p.E344Q	ENST00000295025	NM_002908.2	344	Gag/Cag																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056452	26056453	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCA			P-0044743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	54	246	0	ENST00000343677.2:c.201_204dup	p.Ala69CysfsTer5	p.A69Cfs*5	ENST00000343677	NM_005319.3	68	-/TGCC																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680500	30680500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141963390		P-0044743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	88	487	0	ENST00000376406.3:c.1219G>A	p.Glu407Lys	p.E407K	ENST00000376406	NM_014641.2	407	Gag/Aag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772982	135772983	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AA			P-0044743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	42	210	0	ENST00000298552.3:c.2640_2641delinsTT	p.Met880_Lys881delinsIleTer	p.M880_K881delinsI*	ENST00000298552	NM_001162426.1	880	atGAaa/atTTaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	25	297	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	22	332	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612638	228612638	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146830002		P-0044570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	168	464	0	ENST00000366696.1:c.389G>A	p.Arg130His	p.R130H	ENST00000366696	NM_003493.2	130	cGt/cAt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370318	40370319	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	272	662	0	ENST00000293328.3:c.1019dup	p.Val341GlyfsTer36	p.V341Gfs*36	ENST00000293328	NM_012448.3	340	cag/caAg																																																																														
MGA	23269	MSKCC	GRCh37	15	42042778	42042784	+	stop_gained	Nonsense_Mutation	ONP	GACTACC	GACTACC	AACTAAA			P-0044570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	62	342	0	ENST00000219905.7:c.6973_6979delinsAACTAAA	p.Asp2325_Gln2327delinsAsnTerLys	p.D2325_Q2327delinsN*K	ENST00000219905	NM_001164273.1	2325	GACTACCag/AACTAAAag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349350	89349350	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025912-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			867	183	687	0	ENST00000301030.4:c.3600A>T	p.Lys1200Asn	p.K1200N	ENST00000301030	NM_001256183.1	1200	aaA/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025912-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	350	612	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252941	36252943	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0025912-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			493	73	414	0	ENST00000300305.3:c.419_421del	p.Tyr140del	p.Y140del	ENST00000300305		140	tACTcg/tcg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52696178	52696178	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025912-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			730	67	498	0	ENST00000394830.3:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000394830	NM_018313.4	167	Caa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142186826	142186826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025912-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	49	271	0	ENST00000350721.4:c.6637G>A	p.Gly2213Arg	p.G2213R	ENST00000350721	NM_001184.3	2213	Gga/Aga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025912-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			369	116	290	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526639	106526639	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025912-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	161	383	0	ENST00000359195.3:c.2932A>T	p.Ile978Phe	p.I978F	ENST00000359195	NM_002649.2	978	Att/Ttt																																																																														
TEK	7010	MSKCC	GRCh37	9	27172718	27172718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025912-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	149	453	0	ENST00000380036.4:c.733G>T	p.Gly245Trp	p.G245W	ENST00000380036	NM_000459.3	245	Ggg/Tgg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223540	53223541	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0025912-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	94	421	0	ENST00000375401.3:c.3818_3819del	p.Pro1273ArgfsTer26	p.P1273Rfs*26	ENST00000375401	NM_004187.3	1273	cCC/c																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	408	446	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	149	497	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0044613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	97	270	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	49	373	0	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27840093	27840093	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0044613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	69	217	0	ENST00000328488.2:c.1A>G	p.Met1?	p.M1?	ENST00000328488	NM_003533.2	1	Atg/Gtg																																																																														
SETD8	0	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0044613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	10	38	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522712	67522712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	38	193	0	ENST00000274335.5:c.209C>T	p.Pro70Leu	p.P70L	ENST00000274335		70	cCg/cTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828142	3828142	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	109	348	0	ENST00000262367.5:c.1983A>G	p.Ile661Met	p.I661M	ENST00000262367	NM_004380.2	661	atA/atG																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348022	89348022	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147690079		P-0044613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	50	741	2	ENST00000301030.4:c.4928C>T	p.Pro1643Leu	p.P1643L	ENST00000301030	NM_001256183.1	1643	cCg/cTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591133	+	inframe_deletion	In_Frame_Del	DEL	TGAGAAAGA	TGAGAAAGA	-			P-0044613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	42	251	0	ENST00000274335.5:c.1718_1726del	p.Leu573_Thr576delinsPro	p.L573_T576delinsP	ENST00000274335		573	cTGAGAAAGAcg/ccg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942807	44942807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	21	414	1	ENST00000377967.4:c.3387G>A	p.Met1129Ile	p.M1129I	ENST00000377967	NM_021140.2	1129	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	407	607	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71936091	71936091	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			137	35	90	0	ENST00000298229.2:c.63G>A	p.Trp21Ter	p.W21*	ENST00000298229	NM_001567.3	21	tgG/tgA																																																																														
CASP8	841	MSKCC	GRCh37	2	202149793	202149793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	188	712	0	ENST00000358485.4:c.1234A>G	p.Lys412Glu	p.K412E	ENST00000358485	NM_001080125.1	412	Aaa/Gaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730904	40730904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			827	211	644	0	ENST00000373198.4:c.3631G>C	p.Glu1211Gln	p.E1211Q	ENST00000373198	NM_133170.3	1211	Gag/Cag																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186507023	186507023	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	58	283	0	ENST00000323963.5:c.1189G>T	p.Glu397Ter	p.E397*	ENST00000323963		397	Gag/Tag																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88649951	88649951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	16	687	0	ENST00000372037.3:c.200G>A	p.Cys67Tyr	p.C67Y	ENST00000372037	NM_004329.2	67	tGt/tAt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287465	33287480	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTATGCTGGAGGGG	ATCTATGCTGGAGGGG	-			P-0044178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	22	580	0	ENST00000374542.5:c.1617_1632del	p.Pro540LeufsTer11	p.P540Lfs*11	ENST00000374542	NM_001141970.1	539	gcCCCCTCCAGCATAGAT/gc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575047	64575065	+	protein_altering_variant	In_Frame_Del	DEL	GCGAGTCGGTGTGCAGGTC	GCGAGTCGGTGTGCAGGTC	T			P-0044178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	21	593	0	ENST00000337652.1:c.757_775delinsA	p.Asp253_Leu259delinsMet	p.D253_L259delinsM	ENST00000337652	NM_130803.2	253	GACCTGCACACCGACTCGCtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	91	753	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CD276	80381	MSKCC	GRCh37	15	73994850	73994850	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141119771		P-0044640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	11	116	0	ENST00000318443.5:c.334G>A	p.Val112Met	p.V112M	ENST00000318443	NM_001024736.1	112	Gtg/Atg																																																																														
RB1	5925	MSKCC	GRCh37	13	49033959	49033959	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	76	437	0	ENST00000267163.4:c.2096A>C	p.His699Pro	p.H699P	ENST00000267163	NM_000321.2	699	cAt/cCt																																																																														
NF1	4763	MSKCC	GRCh37	17	29654511	29654592	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCCAGGTTGGTTCTACTGCTGTCCAAGTAACTTCAGCAGAGCGAACAAAAGTCCTAGGGCAATCAGTCTTTCTAAATGACA	TTCCAGGTTGGTTCTACTGCTGTCCAAGTAACTTCAGCAGAGCGAACAAAAGTCCTAGGGCAATCAGTCTTTCTAAATGACA	-			P-0044640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	31	222	0	ENST00000358273.4:c.5269-4_5346del		p.X1757_splice	ENST00000358273	NM_001042492.2	1757																																																																															
CASP8	841	MSKCC	GRCh37	2	202131099	202131355	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTAGTAGTTGCAGTAGCCTTTGATGAACAAGCCAGCAAATGGTACTTTTCTTCCTTATCTGAACATACCATTTATTTTGACTTAGATTATATTCTCCTGCCTTTTAAAAAGATGGACTTCAGCAGAAATCTTTATGATATTGGGGAACAACTGGACAGTGAAGATCTGGCCTCCCTCAAGTTCCTGAGCCTGGACTACATTCCGCAAAGGAAGCAAGAACCCATCAAGGATGCCTTGATGTTATTCCAGAGACTCCA	CTAGTAGTTGCAGTAGCCTTTGATGAACAAGCCAGCAAATGGTACTTTTCTTCCTTATCTGAACATACCATTTATTTTGACTTAGATTATATTCTCCTGCCTTTTAAAAAGATGGACTTCAGCAGAAATCTTTATGATATTGGGGAACAACTGGACAGTGAAGATCTGGCCTCCCTCAAGTTCCTGAGCCTGGACTACATTCCGCAAAGGAAGCAAGAACCCATCAAGGATGCCTTGATGTTATTCCAGAGACTCCA	-			P-0044640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	34	99	0	ENST00000358485.4:c.152-85_323del		p.X51_splice	ENST00000358485	NM_001080125.1	51																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138383922	138383922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	27	469	1	ENST00000289153.2:c.2628C>A	p.Phe876Leu	p.F876L	ENST00000289153	NM_006219.2	876	ttC/ttA																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056320	180056320	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0044640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	27	843	0	ENST00000261937.6:c.924T>G	p.Tyr308Ter	p.Y308*	ENST00000261937	NM_182925.4	308	taT/taG																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	43	564	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0044735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	29	474	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	316	428	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	175	472	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	194	575	1	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	188	540	2	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	184	712	4	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	226	574	1	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954643	17954643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	204	624	1	ENST00000458235.1:c.251del	p.Pro84ArgfsTer63	p.P84Rfs*63	ENST00000458235	NM_000215.3	84	cCg/cg																																																																														
KIT	3815	MSKCC	GRCh37	4	55604640	55604640	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146374006		P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	213	499	0	ENST00000288135.5:c.2848G>A	p.Val950Met	p.V950M	ENST00000288135	NM_000222.2	950	Gtg/Atg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	160	539	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	217	539	6	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645275	67645276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	177	477	0	ENST00000264010.4:c.544dup	p.Glu182GlyfsTer9	p.E182Gfs*9	ENST00000264010	NM_006565.3	180	-/G																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099950	27099950	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	243	513	1	ENST00000324856.7:c.3829C>T	p.Gln1277Ter	p.Q1277*	ENST00000324856	NM_006015.4	1277	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692979	89692979	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	105	393	0	ENST00000371953.3:c.463T>A	p.Tyr155Asn	p.Y155N	ENST00000371953	NM_000314.4	155	Tat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431746	49431748	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	189	575	1	ENST00000301067.7:c.9391_9393del	p.Pro3131del	p.P3131del	ENST00000301067	NM_003482.3	3131	CCT/-																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2090156	2090156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148474733		P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	222	609	2	ENST00000219066.1:c.793G>A	p.Ala265Thr	p.A265T	ENST00000219066	NM_002528.5	265	Gcc/Acc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463271	25463271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	156	430	0	ENST00000264709.3:c.2222C>T	p.Ala741Val	p.A741V	ENST00000264709	NM_175629.2	741	gCg/gTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258581	16258581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	187	430	2	ENST00000375759.3:c.5846G>A	p.Arg1949Gln	p.R1949Q	ENST00000375759	NM_015001.2	1949	cGg/cAg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598813	28598813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	206	605	0	ENST00000253063.3:c.373T>C	p.Cys125Arg	p.C125R	ENST00000253063	NM_031459.4	125	Tgt/Cgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690810	89690813	+	frameshift_variant	Frame_Shift_Del	DEL	GAAA	GAAA	-			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	94	388	0	ENST00000371953.3:c.219_222delAAGA	p.Glu73AspfsTer25	p.E73Dfs*25	ENST00000371953	NM_000314.4	73	GAAAga/ga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865782	57865782	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	212	531	0	ENST00000228682.2:c.3259A>G	p.Asn1087Asp	p.N1087D	ENST00000228682	NM_005269.2	1087	Aac/Gac																																																																														
POLE	5426	MSKCC	GRCh37	12	133254290	133254291	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	161	368	0	ENST00000320574.5:c.593dup	p.Gly199ArgfsTer5	p.G199Rfs*5	ENST00000320574	NM_006231.2	198	ggc/ggGc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944597	32944597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	199	590	0	ENST00000380152.3:c.8390A>G	p.Asp2797Gly	p.D2797G	ENST00000380152		2797	gAc/gGc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632633	3632633	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	249	615	0	ENST00000294008.3:c.5215del	p.Glu1739ArgfsTer18	p.E1739Rfs*18	ENST00000294008	NM_032444.2	1739	Gag/ag																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45396912	45396912	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	104	363	0	ENST00000262160.6:c.260T>G	p.Leu87Arg	p.L87R	ENST00000262160	NM_005901.5	87	cTg/cGg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621901	1621901	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	200	601	1	ENST00000344749.5:c.891del	p.Gly298GlufsTer96	p.G298Efs*96	ENST00000344749	NM_001136139.2	297	ccC/cc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252775	10252775	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	250	535	0	ENST00000340748.4:c.3190T>C	p.Tyr1064His	p.Y1064H	ENST00000340748		1064	Tat/Cat																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610345	10610345	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	238	584	0	ENST00000171111.5:c.365T>C	p.Val122Ala	p.V122A	ENST00000171111	NM_203500.1	122	gTg/gCg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257962	19257962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	279	724	1	ENST00000162023.5:c.424G>A	p.Val142Met	p.V142M	ENST00000162023		142	Gtg/Atg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213276	36213276	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	198	580	2	ENST00000222270.7:c.2473C>T	p.Gln825Ter	p.Q825*	ENST00000222270	NM_014727.1	825	Cag/Tag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99154439	99154439	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	138	424	1	ENST00000074304.5:c.579+2T>C		p.X193_splice	ENST00000074304	NM_001134224.1	193																																																																															
BARD1	580	MSKCC	GRCh37	2	215645286	215645286	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	145	379	0	ENST00000260947.4:c.1312A>G	p.Lys438Glu	p.K438E	ENST00000260947	NM_000465.2	438	Aag/Gag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017219	31017219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140731196		P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	119	283	0	ENST00000375687.4:c.550G>A	p.Val184Met	p.V184M	ENST00000375687	NM_015338.5	184	Gtg/Atg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29099491	29099491	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	73	246	0	ENST00000328354.6:c.908+2T>C		p.X303_splice	ENST00000328354	NM_007194.3	303																																																																															
EP300	2033	MSKCC	GRCh37	22	41527599	41527599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	180	390	0	ENST00000263253.7:c.1490G>A	p.Gly497Glu	p.G497E	ENST00000263253	NM_001429.3	497	gGg/gAg																																																																														
EP300	2033	MSKCC	GRCh37	22	41533747	41533747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	189	490	1	ENST00000263253.7:c.1713G>A	p.Trp571Ter	p.W571*	ENST00000263253	NM_001429.3	571	tgG/tgA																																																																														
EP300	2033	MSKCC	GRCh37	22	41566541	41566541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	143	286	0	ENST00000263253.7:c.4418A>G	p.Lys1473Arg	p.K1473R	ENST00000263253	NM_001429.3	1473	aAg/aGg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164537	47164537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	109	448	1	ENST00000409792.3:c.1589G>A	p.Cys530Tyr	p.C530Y	ENST00000409792	NM_014159.6	530	tGt/tAt																																																																														
KDR	3791	MSKCC	GRCh37	4	55953798	55953798	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	194	534	2	ENST00000263923.4:c.3638A>G	p.His1213Arg	p.H1213R	ENST00000263923	NM_002253.2	1213	cAt/cGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542660	187542660	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	136	465	1	ENST00000441802.2:c.5080C>T	p.Gln1694Ter	p.Q1694*	ENST00000441802	NM_005245.3	1694	Caa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589135	67589136	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	35	291	0	ENST00000274335.5:c.1126_1127del	p.Gly376LysfsTer2	p.G376Kfs*2	ENST00000274335		375	GGg/g																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591126	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	71	279	0	ENST00000274335.5:c.1718_1719del	p.Leu573GlnfsTer28	p.L573Qfs*28	ENST00000274335		573	cTG/c																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524370	176524370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	250	596	0	ENST00000292408.4:c.2231A>G	p.Asp744Gly	p.D744G	ENST00000292408	NM_213647.1	744	gAc/gGc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056287	26056287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	32	478	0	ENST00000343677.2:c.370G>A	p.Gly124Ser	p.G124S	ENST00000343677	NM_005319.3	124	Ggc/Agc																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250649	26250649	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	181	523	0	ENST00000446824.2:c.185T>C	p.Leu62Pro	p.L62P	ENST00000446824	NM_021018.2	62	cTg/cCg																																																																														
SESN1	27244	MSKCC	GRCh37	6	109321776	109321776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	160	567	0	ENST00000436639.2:c.647C>T	p.Ala216Val	p.A216V	ENST00000436639	NM_014454.2	216	gCt/gTt																																																																														
FYN	2534	MSKCC	GRCh37	6	112015592	112015592	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	214	444	0	ENST00000368678.4:c.1250A>G	p.Tyr417Cys	p.Y417C	ENST00000368678		417	tAc/tGc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148506473	148506473	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	93	286	0	ENST00000320356.2:c.2039T>C	p.Val680Ala	p.V680A	ENST00000320356	NM_004456.4	680	gTg/gCg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141570548	141570548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	197	532	1	ENST00000220592.5:c.580G>A	p.Gly194Arg	p.G194R	ENST00000220592	NM_012154.3	194	Ggg/Agg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0033211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	124	252	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0033211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	59	215	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0033211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	110	254	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	111	387	0	ENST00000263967.3:c.333G>C	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	99	578	0	ENST00000263967.3:c.1637A>T	p.Gln546Leu	p.Q546L	ENST00000263967	NM_006218.2	546	cAg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106043	27106044	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	122	405	0	ENST00000324856.7:c.5655dup	p.Glu1886ArgfsTer15	p.E1886Rfs*15	ENST00000324856	NM_006015.4	1885	gca/gcAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653852	89653854	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0033211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	104	380	0	ENST00000371953.3:c.155_157del	p.Asp52del	p.D52del	ENST00000371953	NM_000314.4	50	atTGAt/att																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981098	201981098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	111	598	0	ENST00000359651.3:c.177G>T	p.Trp59Cys	p.W59C	ENST00000359651		59	tgG/tgT																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589171	67589171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	91	239	0	ENST00000274335.5:c.1159G>A	p.Asp387Asn	p.D387N	ENST00000274335		387	Gat/Aat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	116	422	2	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	184	548	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	301	417	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
KDM5A	5927	MSKCC	GRCh37	12	420160	420160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	288	376	0	ENST00000399788.2:c.3107G>A	p.Arg1036His	p.R1036H	ENST00000399788	NM_001042603.1	1036	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692886	89692886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	237	312	0	ENST00000371953.3:c.370T>A	p.Cys124Ser	p.C124S	ENST00000371953	NM_000314.4	124	Tgt/Agt																																																																														
ACVR1	90	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	98	274	0	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720851	89720851	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	151	307	0	ENST00000371953.3:c.1003del	p.Arg335AspfsTer9	p.R335Dfs*9	ENST00000371953	NM_000314.4	334	aaC/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056333	27056334	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	44	345	0	ENST00000324856.7:c.1331dup	p.Leu445ProfsTer178	p.L445Pfs*178	ENST00000324856	NM_006015.4	443	-/G																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106872	27106873	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	368	515	0	ENST00000324856.7:c.6483_6484del	p.Cys2163ProfsTer61	p.C2163Pfs*61	ENST00000324856	NM_006015.4	2161	ccGGtg/cctg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660479	67660480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	136	348	0	ENST00000264010.4:c.1381dup	p.Ser461PhefsTer4	p.S461Ffs*4	ENST00000264010	NM_006565.3	460	cat/caTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581208	48581208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	64	410	1	ENST00000342988.3:c.512C>T	p.Ser171Leu	p.S171L	ENST00000342988	NM_005359.5	171	tCg/tTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10244351	10244351	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	230	577	0	ENST00000340748.4:c.4843A>G	p.Lys1615Glu	p.K1615E	ENST00000340748		1615	Aag/Gag																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085990	16085990	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	253	481	0	ENST00000281043.3:c.1166T>G	p.Leu389Arg	p.L389R	ENST00000281043	NM_005378.4	389	cTg/cGg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672218	86672218	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	54	274	0	ENST00000274376.6:c.2020C>G	p.Arg674Gly	p.R674G	ENST00000274376	NM_002890.2	674	Cgc/Ggc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	45	369	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005636-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			192	339	641	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117626	70117626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005636-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1304	234	591	0	ENST00000245479.2:c.94G>T	p.Gly32Cys	p.G32C	ENST00000245479	NM_000346.3	32	Ggc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291040	15291040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005636-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			920	320	791	1	ENST00000263388.2:c.3170C>T	p.Ala1057Val	p.A1057V	ENST00000263388	NM_000435.2	1057	gCg/gTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195630	123195630	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005636-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			19	52	90	0	ENST00000218089.9:c.1544A>T	p.Asp515Val	p.D515V	ENST00000218089	NM_001042749.1	515	gAt/gTt																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020901	26020901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005636-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			299	135	348	0	ENST00000357647.3:c.184C>T	p.Leu62Phe	p.L62F	ENST00000357647	NM_003529.2	62	Ctt/Ttt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46609156	46609156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005636-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			815	199	705	0	ENST00000263734.3:c.2215C>T	p.Arg739Trp	p.R739W	ENST00000263734	NM_001430.4	739	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56477546	56477546	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005636-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			539	149	430	0	ENST00000267101.3:c.94A>T	p.Thr32Ser	p.T32S	ENST00000267101	NM_001982.3	32	Act/Tct																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864720	57864720	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005636-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			835	231	747	0	ENST00000228682.2:c.2201del	p.Gly734AspfsTer63	p.G734Dfs*63	ENST00000228682	NM_005269.2	733	Ggg/gg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416659	121416682	+	inframe_deletion	In_Frame_Del	DEL	CTGGGTGAGCCGGGGCCCTACCTC	CTGGGTGAGCCGGGGCCCTACCTC	-			P-0005636-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			770	204	651	0	ENST00000257555.6:c.92_115del	p.Gly31_Leu38del	p.G31_L38del	ENST00000257555		30	CTGGGTGAGCCGGGGCCCTACCTC/-																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623771	28623771	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0005636-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			494	111	455	0	ENST00000241453.7:c.882+1G>C		p.X294_splice	ENST00000241453	NM_004119.2	294																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633192	3633192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005636-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1512	306	935	0	ENST00000294008.3:c.5059C>T	p.Pro1687Ser	p.P1687S	ENST00000294008	NM_032444.2	1687	Cct/Tct																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984269	7984269	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005636-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			530	160	534	0	ENST00000319144.4:c.460C>G	p.Pro154Ala	p.P154A	ENST00000319144	NM_001139.2	154	Ccc/Gcc																																																																														
KIT	3815	MSKCC	GRCh37	4	55565865	55565865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005636-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			426	132	448	0	ENST00000288135.5:c.689C>A	p.Thr230Lys	p.T230K	ENST00000288135	NM_000222.2	230	aCa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	110	321	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485926	8485926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	36	339	0	ENST00000356435.5:c.2891C>T	p.Pro964Leu	p.P964L	ENST00000356435		964	cCc/cTc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902592	1902593	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCA			P-0015934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	65	651	0	ENST00000382891.5:c.211_212insGGCA	p.Leu71ArgfsTer19	p.L71Rfs*19	ENST00000382891	NM_133335.3	71	ctg/cGGCAtg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356271	66356271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	97	491	0	ENST00000273854.3:c.1226G>C	p.Gly409Ala	p.G409A	ENST00000273854	NM_004439.5	409	gGc/gCc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554928	106554928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	51	450	0	ENST00000369096.4:c.2045C>T	p.Thr682Ile	p.T682I	ENST00000369096	NM_001198.3	682	aCc/aTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76778753	76778753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	71	381	0	ENST00000373344.5:c.6826G>T	p.Ala2276Ser	p.A2276S	ENST00000373344	NM_000489.3	2276	Gct/Tct																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			329	818	575	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827732	72827732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			272	198	484	1	ENST00000268489.5:c.8849G>A	p.Arg2950His	p.R2950H	ENST00000268489	NM_006885.3	2950	cGc/cAc																																																																														
MET	4233	MSKCC	GRCh37	7	116423407	116423407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28932777		P-0034368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			487	137	263	0	ENST00000397752.3:c.3682G>A	p.Asp1228Asn	p.D1228N	ENST00000397752	NM_000245.2	1228	Gac/Aac																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867291	45867291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			796	140	693	1	ENST00000391945.4:c.902C>T	p.Thr301Met	p.T301M	ENST00000391945	NM_000400.3	301	aCg/aTg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115263331	115263331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			490	99	502	2	ENST00000438362.2:c.2019G>A	p.Met673Ile	p.M673I	ENST00000438362	NM_001242891.1	673	atG/atA																																																																														
INSR	3643	MSKCC	GRCh37	19	7172404	7172404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			382	90	491	0	ENST00000302850.5:c.1165G>A	p.Glu389Lys	p.E389K	ENST00000302850	NM_000208.2	389	Gaa/Aaa																																																																														
BARD1	580	MSKCC	GRCh37	2	215645900	215645900	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			460	220	490	0	ENST00000260947.4:c.698A>C	p.Glu233Ala	p.E233A	ENST00000260947	NM_000465.2	233	gAg/gCg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161825	47161825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			371	71	299	0	ENST00000409792.3:c.4301G>A	p.Gly1434Glu	p.G1434E	ENST00000409792	NM_014159.6	1434	gGa/gAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98240446	98240446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			504	93	381	0	ENST00000331920.6:c.1238A>G	p.Gln413Arg	p.Q413R	ENST00000331920	NM_000264.3	413	cAg/cGg																																																																														
RB1	5925	MSKCC	GRCh37	13	48878117	48878198	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCGCCGCCGCCCCCTCCTGAGGAGGACCCAGAGCAGGACAGCGGCCCGGAGGACCTGCCTCTCGTCAGGTGAGCGAGCAGA	GCCGCCGCCGCCCCCTCCTGAGGAGGACCCAGAGCAGGACAGCGGCCCGGAGGACCTGCCTCTCGTCAGGTGAGCGAGCAGA	-			P-0034368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			98	16	119	0	ENST00000267163.4:c.76_137+20del		p.X26_splice	ENST00000267163	NM_000321.2	26																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035780-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	89	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330522	65330522	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035780-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	127	423	0	ENST00000342505.4:c.1124T>G	p.Ile375Ser	p.I375S	ENST00000342505	NM_002227.2	375	aTt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577134	7577134	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035780-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			743	162	613	0	ENST00000269305.4:c.804del	p.Asn268LysfsTer77	p.N268Kfs*77	ENST00000269305	NM_001126112.2	268	aaC/aa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81925196	81925196	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035780-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			586	94	409	0	ENST00000359376.3:c.986+1G>A		p.X329_splice	ENST00000359376	NM_002661.3	329																																																																															
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			207	31	284	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																														
RET	5979	MSKCC	GRCh37	10	43609952	43609952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	653	1050	0	ENST00000355710.3:c.1904G>A	p.Arg635His	p.R635H	ENST00000355710	NM_020975.4	635	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974744	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			207	49	404	0	ENST00000304494.5:c.52_83del	p.Thr18AlafsTer15	p.T18Afs*15	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTg/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974744	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			207	49	404	0	ENST00000304494.5:c.52_83del	p.Thr18AlafsTer15	p.T18Afs*15	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTg/g																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456347	99456347	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			519	10757	574	0	ENST00000268035.6:c.1664A>G	p.Asp555Gly	p.D555G	ENST00000268035	NM_000875.3	555	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			379	490	735	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
MSI1	4440	MSKCC	GRCh37	12	120791129	120791129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	238	945	2	ENST00000257552.2:c.706G>A	p.Ala236Thr	p.A236T	ENST00000257552	NM_002442.3	236	Gcc/Acc																																																																														
STK40	83931	MSKCC	GRCh37	1	36814333	36814333	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			781	78	694	0	ENST00000373129.3:c.707G>C	p.Ser236Thr	p.S236T	ENST00000373129	NM_032017.1	236	aGc/aCc																																																																														
STK40	83931	MSKCC	GRCh37	1	36823905	36823905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			691	270	715	1	ENST00000373129.3:c.277G>A	p.Glu93Lys	p.E93K	ENST00000373129	NM_032017.1	93	Gag/Aag																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400860	72400860	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			175	222	384	0	ENST00000357731.5:c.311A>C	p.Gln104Pro	p.Q104P	ENST00000357731	NM_173808.2	104	cAg/cCg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88428924	88428924	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			286	336	508	0	ENST00000360948.2:c.2175+1del		p.X725_splice	ENST00000360948	NM_001012338.2	725																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943638	9943639	+	missense_variant	Missense_Mutation	DNP	GC	GC	CA			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			641	113	708	1	ENST00000330684.3:c.1302_1303delinsTG	p.Pro435Ala	p.P435A	ENST00000330684	NM_001134407.1	434	gtGCca/gtTGca																																																																														
CDH1	999	MSKCC	GRCh37	16	68835717	68835717	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			346	296	739	1	ENST00000261769.5:c.308G>A	p.Trp103Ter	p.W103*	ENST00000261769	NM_004360.3	103	tGg/tAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213786	66213786	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201970590		P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			373	105	421	0	ENST00000273854.3:c.2644A>G	p.Met882Val	p.M882V	ENST00000273854	NM_004439.5	882	Atg/Gtg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166260	32166260	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	93	795	0	ENST00000375023.3:c.4694C>A	p.Ala1565Asp	p.A1565D	ENST00000375023	NM_004557.3	1565	gCc/gAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100455	8100460	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCA	GGGCCA	T			P-0036499-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1553	138	932	0	ENST00000346208.3:c.429_434delinsT	p.Gly144ArgfsTer157	p.G144Rfs*157	ENST00000346208		143	ggGGGCCAc/ggTc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163690	72163690	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	86	251	0	ENST00000357731.5:c.667+1G>A		p.X223_splice	ENST00000357731	NM_173808.2	223																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115267931	115267931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	89	338	0	ENST00000438362.2:c.1802G>T	p.Ser601Ile	p.S601I	ENST00000438362	NM_001242891.1	601	aGc/aTc																																																																														
ATM	472	MSKCC	GRCh37	11	108199881	108199881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	89	130	0	ENST00000278616.4:c.7223C>T	p.Ser2408Leu	p.S2408L	ENST00000278616	NM_000051.3	2408	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	178	269	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641744	23641744	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	51	205	0	ENST00000261584.4:c.1731T>G	p.Asn577Lys	p.N577K	ENST00000261584	NM_024675.3	577	aaT/aaG																																																																														
CDH1	999	MSKCC	GRCh37	16	68845733	68845733	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	120	335	0	ENST00000261769.5:c.979A>G	p.Ser327Gly	p.S327G	ENST00000261769	NM_004360.3	327	Agt/Ggt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52729229	52729229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	229	454	0	ENST00000322088.6:c.1765G>T	p.Ala589Ser	p.A589S	ENST00000322088	NM_014225.5	589	Gcc/Tcc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266713	198266713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776846119		P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	158	349	0	ENST00000335508.6:c.2219G>A	p.Gly740Glu	p.G740E	ENST00000335508	NM_012433.2	740	gGa/gAa																																																																														
ERG	2078	MSKCC	GRCh37	21	39755470	39755470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	206	397	2	ENST00000288319.7:c.1295C>A	p.Ala432Glu	p.A432E	ENST00000288319	NM_182918.3	432	gCg/gAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946428	2946428	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	506	656	0	ENST00000396946.4:c.3309C>A	p.Cys1103Ter	p.C1103*	ENST00000396946	NM_032415.4	1103	tgC/tgA																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249873	110249873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	222	580	0	ENST00000374672.4:c.802G>T	p.Gly268Cys	p.G268C	ENST00000374672	NM_004235.4	268	Ggc/Tgc																																																																														
BTK	695	MSKCC	GRCh37	X	100613316	100613316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	174	454	0	ENST00000308731.7:c.1084C>A	p.His362Asn	p.H362N	ENST00000308731	NM_000061.2	362	Cat/Aat																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480557	123480557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	133	445	0	ENST00000371139.4:c.65C>A	p.Ala22Asp	p.A22D	ENST00000371139	NM_001114937.2	22	gCc/gAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157529020	157529027	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	TTATGACA	TTATGACA	-			P-0044414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	22	330	0	ENST00000346085.5:c.6746_*3del		p.*2249*	ENST00000346085	NM_020732.3	2249																																																																															
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0044432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	34	559	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056437	26056437	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	26	338	0	ENST00000343677.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000343677	NM_005319.3	74	Gag/Cag																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871782	35871782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	54	595	0	ENST00000216797.5:c.724G>A	p.Asp242Asn	p.D242N	ENST00000216797	NM_020529.2	242	Gat/Aat																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0044457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	17	538	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201882	67201882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	62	832	0	ENST00000312629.5:c.1082G>A	p.Arg361His	p.R361H	ENST00000312629	NM_003952.2	361	cGc/cAc																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23539027	23539028	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	117	679	0	ENST00000380871.4:c.411dup	p.Glu138ArgfsTer16	p.E138Rfs*16	ENST00000380871	NM_006167.3	137	-/C																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	255	452	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	347	1194	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435386	56435386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	207	1064	3	ENST00000407977.2:c.1751G>A	p.Arg584Gln	p.R584Q	ENST00000407977		584	cGg/cAg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981298	201981298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	90	871	0	ENST00000359651.3:c.377G>C	p.Arg126Pro	p.R126P	ENST00000359651		126	cGa/cCa																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804367	46804367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	175	609	0	ENST00000290295.7:c.640C>T	p.Arg214Cys	p.R214C	ENST00000290295	NM_006361.5	214	Cgt/Tgt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492853	56492853	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	103	461	0	ENST00000407977.2:c.86del	p.Gly29AspfsTer22	p.G29Dfs*22	ENST00000407977		29	gGa/ga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633382	8633382	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	136	513	0	ENST00000356435.5:c.287A>T	p.Tyr96Phe	p.Y96F	ENST00000356435		96	tAt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	109	401	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	170	662	0	ENST00000269305.4:c.721T>C	p.Ser241Pro	p.S241P	ENST00000269305	NM_001126112.2	241	Tcc/Ccc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032156	26032156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	62	482	0	ENST00000244661.2:c.133G>T	p.Gly45Cys	p.G45C	ENST00000244661	NM_003537.3	45	Ggc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444548	49444548	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	186	911	0	ENST00000301067.7:c.2823del	p.Ile942SerfsTer16	p.I942Sfs*16	ENST00000301067	NM_003482.3	941	ccC/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	102	434	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624293	89624293	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	147	579	0	ENST00000371953.3:c.67T>G	p.Leu23Val	p.L23V	ENST00000371953	NM_000314.4	23	Tta/Gta																																																																														
APC	324	MSKCC	GRCh37	5	112154935	112154935	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	217	734	0	ENST00000257430.4:c.1206delT	p.Glu403LysfsTer51	p.E403Kfs*51	ENST00000257430	NM_000038.5	402	cgT/cg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	278	597	1	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690835	89690835	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	89	286	0	ENST00000371953.3:c.242T>G	p.Phe81Cys	p.F81C	ENST00000371953	NM_000314.4	81	tTt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	259	751	0	ENST00000269305.4:c.724T>A	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	Tgc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	221	484	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457389	67457389	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	242	1027	0	ENST00000327367.4:c.363C>A	p.Cys121Ter	p.C121*	ENST00000327367	NM_005902.3	121	tgC/tgA																																																																														
CBFB	865	MSKCC	GRCh37	16	67116155	67116155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	183	617	0	ENST00000412916.2:c.439C>T	p.Arg147Trp	p.R147W	ENST00000412916		147	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	258	851	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246167	41246167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	195	438	0	ENST00000357654.3:c.1381T>C	p.Phe461Leu	p.F461L	ENST00000357654	NM_007294.3	461	Ttt/Ctt																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0044492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	245	372	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	14	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	19	608	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578219	7578220	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	303	545	0	ENST00000269305.4:c.629dup	p.Asn210LysfsTer6	p.N210Kfs*6	ENST00000269305	NM_001126112.2	210	aac/aaAc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990703	7990703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	167	574	0	ENST00000319144.4:c.58G>T	p.Asp20Tyr	p.D20Y	ENST00000319144	NM_001139.2	20	Gac/Tac																																																																														
INSR	3643	MSKCC	GRCh37	19	7267785	7267785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	118	515	0	ENST00000302850.5:c.223G>C	p.Asp75His	p.D75H	ENST00000302850	NM_000208.2	75	Gac/Cac																																																																														
BCL6	604	MSKCC	GRCh37	3	187447106	187447106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	129	536	0	ENST00000232014.4:c.1087C>A	p.Pro363Thr	p.P363T	ENST00000232014	NM_001130845.1	363	Cca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112174182	112174182	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	50	255	0	ENST00000257430.4:c.2891T>A	p.Leu964Ter	p.L964*	ENST00000257430	NM_000038.5	964	tTa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112176021	112176021	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	29	228	1	ENST00000257430.4:c.4731delA	p.Glu1577AspfsTer73	p.E1577Dfs*73	ENST00000257430	NM_000038.5	1577	gAa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0044338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	235	456	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375357	118375357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	31	247	0	ENST00000534358.1:c.8750C>G	p.Ser2917Cys	p.S2917C	ENST00000534358	NM_005933.3	2917	tCt/tGt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255963	16256985	+	inframe_deletion	In_Frame_Del	DEL	TGGCTCAAGGCCCAGCTCAGACCTACAAGCAAGACTGGGAGAACTAGCAGGTGAATCTGTGGAAAATCAAGAAGTCCAATCAAAAAAGCCCATTCCCTCAAAACCACAGCTCAAACAGCTGCAGGTATTAGATGATCAAGGACCAGAGAGAGAAGACGTTAGGAAAAACTATTGCAGTCTTCGTGATGAAACACCTGAACGTAAATCAGGCCAAGAGAAATCACATTCAGTAAATACTGAAGAAAAAATTGGCATTGACATCGATCACACGCAGAGTTACCGAAAACAAATGGAACAGAGTCGTAGGAAACAGCAGATGGAAATGGAAATAGCCAAGTCTGAGAAGTTTGGCAGTCCTAAAAAAGATGTAGATGAATATGAAAGACGTAGCCTCGTTCACGAGGTAGGCAAACCCCCTCAAGATGTCACTGATGACTCTCCTCCTAGCAAAAAGAAAAGGATGGATCATGTCGATTTTGATATCTGCACCAAGCGAGAACGGAATTACAGAAGTTCACGCCAAATCAGCGAAGATTCTGAAAGGACTGGTGGTTCTCCCAGTGTCCGACATGGTTCCTTCCATGAAGATGAGGATCCCATAGGCTCCCCTAGGCTACTGTCAGTAAAAGGGTCTCCTAAAGTAGATGAAAAAGTCCTCCCCTATTCTAACATAACAGTCAGGGAAGAGTCTTTAAAATTTAATCCTTATGATTCTAGCAGGAGAGAACAGATGGCAGATATGGCCAAAATAAAACTATCTGTCTTGAATTCTGAAGATGAACTAAATCGTTGGGACTCTCAGATGAAACAGGATGCTGGCAGATTTGATGTGAGTTTCCCAAACAGCATAATTAAGAGAGATAGCCTTCGAAAAAGGTCTGTACGAGATCTGGAACCTGGTGAGGTGCCTTCTGATTCTGACGAAGATGGTGAACACAAATCCCACTCACCCAGAGCCTCTGCATTATATGAAAGTTCTCGATTGTCTTTTTTATTGAGGGACAGAGAAGACAAGCTACGTGA	TGGCTCAAGGCCCAGCTCAGACCTACAAGCAAGACTGGGAGAACTAGCAGGTGAATCTGTGGAAAATCAAGAAGTCCAATCAAAAAAGCCCATTCCCTCAAAACCACAGCTCAAACAGCTGCAGGTATTAGATGATCAAGGACCAGAGAGAGAAGACGTTAGGAAAAACTATTGCAGTCTTCGTGATGAAACACCTGAACGTAAATCAGGCCAAGAGAAATCACATTCAGTAAATACTGAAGAAAAAATTGGCATTGACATCGATCACACGCAGAGTTACCGAAAACAAATGGAACAGAGTCGTAGGAAACAGCAGATGGAAATGGAAATAGCCAAGTCTGAGAAGTTTGGCAGTCCTAAAAAAGATGTAGATGAATATGAAAGACGTAGCCTCGTTCACGAGGTAGGCAAACCCCCTCAAGATGTCACTGATGACTCTCCTCCTAGCAAAAAGAAAAGGATGGATCATGTCGATTTTGATATCTGCACCAAGCGAGAACGGAATTACAGAAGTTCACGCCAAATCAGCGAAGATTCTGAAAGGACTGGTGGTTCTCCCAGTGTCCGACATGGTTCCTTCCATGAAGATGAGGATCCCATAGGCTCCCCTAGGCTACTGTCAGTAAAAGGGTCTCCTAAAGTAGATGAAAAAGTCCTCCCCTATTCTAACATAACAGTCAGGGAAGAGTCTTTAAAATTTAATCCTTATGATTCTAGCAGGAGAGAACAGATGGCAGATATGGCCAAAATAAAACTATCTGTCTTGAATTCTGAAGATGAACTAAATCGTTGGGACTCTCAGATGAAACAGGATGCTGGCAGATTTGATGTGAGTTTCCCAAACAGCATAATTAAGAGAGATAGCCTTCGAAAAAGGTCTGTACGAGATCTGGAACCTGGTGAGGTGCCTTCTGATTCTGACGAAGATGGTGAACACAAATCCCACTCACCCAGAGCCTCTGCATTATATGAAAGTTCTCGATTGTCTTTTTTATTGAGGGACAGAGAAGACAAGCTACGTGA	-			P-0044338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	176	367	0	ENST00000375759.3:c.3228_4250del	p.Gly1077_Glu1417del	p.G1077_E1417del	ENST00000375759	NM_015001.2	1076	tcTGGCTCAAGGCCCAGCTCAGACCTACAAGCAAGACTGGGAGAACTAGCAGGTGAATCTGTGGAAAATCAAGAAGTCCAATCAAAAAAGCCCATTCCCTCAAAACCACAGCTCAAACAGCTGCAGGTATTAGATGATCAAGGACCAGAGAGAGAAGACGTTAGGAAAAACTATTGCAGTCTTCGTGATGAAACACCTGAACGTAAATCAGGCCAAGAGAAATCACATTCAGTAAATACTGAAGAAAAAATTGGCATTGACATCGATCACACGCAGAGTTACCGAAAACAAATGGAACAGAGTCGTAGGAAACAGCAGATGGAAATGGAAATAGCCAAGTCTGAGAAGTTTGGCAGTCCTAAAAAAGATGTAGATGAATATGAAAGACGTAGCCTCGTTCACGAGGTAGGCAAACCCCCTCAAGATGTCACTGATGACTCTCCTCCTAGCAAAAAGAAAAGGATGGATCATGTCGATTTTGATATCTGCACCAAGCGAGAACGGAATTACAGAAGTTCACGCCAAATCAGCGAAGATTCTGAAAGGACTGGTGGTTCTCCCAGTGTCCGACATGGTTCCTTCCATGAAGATGAGGATCCCATAGGCTCCCCTAGGCTACTGTCAGTAAAAGGGTCTCCTAAAGTAGATGAAAAAGTCCTCCCCTATTCTAACATAACAGTCAGGGAAGAGTCTTTAAAATTTAATCCTTATGATTCTAGCAGGAGAGAACAGATGGCAGATATGGCCAAAATAAAACTATCTGTCTTGAATTCTGAAGATGAACTAAATCGTTGGGACTCTCAGATGAAACAGGATGCTGGCAGATTTGATGTGAGTTTCCCAAACAGCATAATTAAGAGAGATAGCCTTCGAAAAAGGTCTGTACGAGATCTGGAACCTGGTGAGGTGCCTTCTGATTCTGACGAAGATGGTGAACACAAATCCCACTCACCCAGAGCCTCTGCATTATATGAAAGTTCTCGATTGTCTTTTTTATTGAGGGACAGAGAAGACAAGCTACGTGAg/tcg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69210657	69210658	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0044338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	118	220	0	ENST00000462284.1:c.241_242del	p.Val81IlefsTer5	p.V81Ifs*5	ENST00000462284	NM_002392.5	80	atTGta/atta																																																																														
YES1	7525	MSKCC	GRCh37	18	745989	745989	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	157	331	0	ENST00000314574.4:c.533A>C	p.Gln178Pro	p.Q178P	ENST00000314574	NM_005433.3	178	cAa/cCa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965996	25965997	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0044338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	210	461	0	ENST00000435504.4:c.3209_3210del	p.Leu1070HisfsTer69	p.L1070Hfs*69	ENST00000435504		1070	cTC/c																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213191	39213191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	263	566	0	ENST00000402219.2:c.3776C>T	p.Pro1259Leu	p.P1259L	ENST00000402219	NM_005633.3	1259	cCt/cTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518292	187518292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	115	185	0	ENST00000441802.2:c.12402C>A	p.Asn4134Lys	p.N4134K	ENST00000441802	NM_005245.3	4134	aaC/aaA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020236-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			364	349	602	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001231	150001231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020236-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			21	324	461	0	ENST00000253339.5:c.2373G>C	p.Met791Ile	p.M791I	ENST00000253339		791	atG/atC																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0027598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			90	349	396	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	217	239	0	ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa																																																																														
KIT	3815	MSKCC	GRCh37	4	55599322	55599322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	243	478	0	ENST00000288135.5:c.2448C>A	p.Asp816Glu	p.D816E	ENST00000288135	NM_000222.2	816	gaC/gaA																																																																														
KIT	3815	MSKCC	GRCh37	4	55599337	55599339	+	missense_variant	Missense_Mutation	ONP	TAA	TAA	CTT			P-0027598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	197	450	1	ENST00000288135.5:c.2463_2465delinsCTT	p.Asn822Phe	p.N822F	ENST00000288135	NM_000222.2	821	tcTAAt/tcCTTt																																																																														
NPM1	4869	MSKCC	GRCh37	5	170814967	170814967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	39	213	2	ENST00000296930.5:c.15G>T	p.Met5Ile	p.M5I	ENST00000296930	NM_002520.6	5	atG/atT																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032246-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	3090	621	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032246-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			902	62	583	0	ENST00000269305.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000269305	NM_001126112.2	236	Tac/Cac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827724	72827725	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0044377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	529	581	0	ENST00000268489.5:c.8856_8857del	p.Gln2952HisfsTer14	p.Q2952Hfs*14	ENST00000268489	NM_006885.3	2952	caAAtg/catg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212209	5212209	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142364974		P-0044377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	326	677	3	ENST00000357368.4:c.4822C>T	p.Arg1608Trp	p.R1608W	ENST00000357368	NM_002850.3	1608	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	126	360	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	96	630	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	77	658	1	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																																																														
ATRX	546	MSKCC	GRCh37	X	76940008	76940008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	60	560	0	ENST00000373344.5:c.740A>G	p.Asn247Ser	p.N247S	ENST00000373344	NM_000489.3	247	aAc/aGc																																																																														
RFWD2	0	MSKCC	GRCh37	1	175996825	175996825	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	86	392	0	ENST00000367669.3:c.1613-1G>T		p.X538_splice	ENST00000367669	NM_022457.5	538																																																																															
HOXB13	10481	MSKCC	GRCh37	17	46805676	46805676	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1338	96	735	0	ENST00000290295.7:c.280C>G	p.Arg94Gly	p.R94G	ENST00000290295	NM_006361.5	94	Cgg/Ggg																																																																														
ALK	238	MSKCC	GRCh37	2	30143080	30143080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	95	782	0	ENST00000389048.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000389048	NM_004304.4	149	gCg/gTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502626	149502626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	57	358	0	ENST00000261799.4:c.2162C>A	p.Pro721His	p.P721H	ENST00000261799	NM_002609.3	721	cCc/cAc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870205	155870205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	140	379	0	ENST00000368323.3:c.634C>T	p.Arg212Trp	p.R212W	ENST00000368323	NM_006912.5	212	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	192	404	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940241	71940241	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113909227		P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	130	528	2	ENST00000298229.2:c.626G>A	p.Arg209His	p.R209H	ENST00000298229	NM_001567.3	209	cGt/cAt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94212878	94212878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	66	323	0	ENST00000323929.3:c.364G>A	p.Val122Met	p.V122M	ENST00000323929	NM_005591.3	122	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420460	49420460	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	173	522	0	ENST00000301067.7:c.15289C>T	p.Arg5097Ter	p.R5097*	ENST00000301067	NM_003482.3	5097	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422891	49422891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	186	515	0	ENST00000301067.7:c.14204G>A	p.Arg4735Gln	p.R4735Q	ENST00000301067	NM_003482.3	4735	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425896	49425896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	150	615	1	ENST00000301067.7:c.12592C>T	p.Arg4198Ter	p.R4198*	ENST00000301067	NM_003482.3	4198	Cga/Tga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	127	356	1	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3842042	3842042	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	104	315	0	ENST00000262367.5:c.1270C>T	p.Arg424Ter	p.R424*	ENST00000262367	NM_004380.2	424	Cga/Tga																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30133218	30133218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	140	464	0	ENST00000263025.4:c.280C>T	p.Arg94Cys	p.R94C	ENST00000263025	NM_002746.2	94	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	318	503	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110127	8110127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	149	411	1	ENST00000585124.1:c.478G>A	p.Gly160Arg	p.G160R	ENST00000585124	NM_004217.3	160	Ggg/Agg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740836	58740836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	176	400	0	ENST00000305921.3:c.1741C>T	p.Arg581Ter	p.R581*	ENST00000305921	NM_003620.3	581	Cga/Tga																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252721	10252721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	124	525	0	ENST00000340748.4:c.3244C>T	p.Arg1082Cys	p.R1082C	ENST00000340748		1082	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15280905	15280905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	129	483	0	ENST00000263388.2:c.5191C>T	p.Arg1731Trp	p.R1731W	ENST00000263388	NM_000435.2	1731	Cgg/Tgg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703631	47703631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	146	368	0	ENST00000233146.2:c.2131C>T	p.Arg711Ter	p.R711*	ENST00000233146	NM_000251.2	711	Cga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	171	347	12	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47061326	47061326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	105	263	1	ENST00000409792.3:c.7355C>T	p.Ser2452Leu	p.S2452L	ENST00000409792	NM_014159.6	2452	tCg/tTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189582117	189582117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	200	398	0	ENST00000264731.3:c.676C>T	p.Arg226Cys	p.R226C	ENST00000264731	NM_003722.4	226	Cgc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	112	350	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
KDR	3791	MSKCC	GRCh37	4	55958789	55958789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	128	393	0	ENST00000263923.4:c.3064C>T	p.Arg1022Ter	p.R1022*	ENST00000263923	NM_002253.2	1022	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	240	407	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508539	106508539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	69	265	0	ENST00000359195.3:c.533G>A	p.Arg178His	p.R178H	ENST00000359195	NM_002649.2	178	cGt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879229	151879229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	133	413	0	ENST00000262189.6:c.5716C>T	p.Arg1906Ter	p.R1906*	ENST00000262189	NM_170606.2	1906	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636794	8636794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	198	443	0	ENST00000356435.5:c.115G>A	p.Gly39Arg	p.G39R	ENST00000356435		39	Gga/Aga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	343	273	1	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	343	273	1	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	343	273	1	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137293667	137293667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	154	591	1	ENST00000481739.1:c.218G>A	p.Gly73Asp	p.G73D	ENST00000481739	NM_002957.4	73	gGc/gAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	150	301	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244242	5244242	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	37	656	0	ENST00000357368.4:c.1240A>C	p.Ser414Arg	p.S414R	ENST00000357368	NM_002850.3	414	Agc/Cgc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426908	6426908	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	90	348	0	ENST00000356142.4:c.101C>G	p.Pro34Arg	p.P34R	ENST00000356142	NM_018890.3	34	cCt/cGt																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30264500	30264500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	87	325	2	ENST00000322652.5:c.235G>T	p.Val79Phe	p.V79F	ENST00000322652	NM_015355.2	79	Gtc/Ttc																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197419	26197419	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	70	299	0	ENST00000356476.2:c.60G>C	p.Gln20His	p.Q20H	ENST00000356476		20	caG/caC																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547187	106547187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	35	238	0	ENST00000369096.4:c.424G>A	p.Gly142Arg	p.G142R	ENST00000369096	NM_001198.3	142	Ggg/Agg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	149	246	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	135	665	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	95	339	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	232	644	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	38	506	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	158	402	6	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	93	430	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	140	692	4	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	132	300	13	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	339492	339492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	83	754	1	ENST00000262320.3:c.2410G>A	p.Ala804Thr	p.A804T	ENST00000262320	NM_003502.3	804	Gct/Act																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099080	157099080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	28	116	0	ENST00000346085.5:c.17G>C	p.Gly6Ala	p.G6A	ENST00000346085	NM_020732.3	6	gGc/gCc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306550	41306550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	104	553	0	ENST00000373198.4:c.1109C>T	p.Thr370Met	p.T370M	ENST00000373198	NM_133170.3	370	aCg/aTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	115	612	0	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	128	327	6	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																																																														
RARA	5914	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	111	600	5	ENST00000254066.5:c.1319delC	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337684	73337684	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			207	79	259	3	ENST00000377767.4:c.2032delA	p.Ile678PhefsTer59	p.I678Ffs*59	ENST00000377767	NM_014953.3	678	Att/tt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56348561	56348561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	85	320	0	ENST00000348428.3:c.374del	p.Pro125GlnfsTer3	p.P125Qfs*3	ENST00000348428	NM_006785.3	123	agC/ag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349353	73349353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	83	271	0	ENST00000377767.4:c.983G>A	p.Arg328Gln	p.R328Q	ENST00000377767	NM_014953.3	328	cGa/cAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11319442	11319442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	149	591	3	ENST00000361445.4:c.25G>A	p.Ala9Thr	p.A9T	ENST00000361445	NM_004958.3	9	Gcc/Acc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			524	174	491	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			851	130	775	4	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096133	2096133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	132	609	0	ENST00000219066.1:c.374delC	p.Pro125GlnfsTer12	p.P125Qfs*12	ENST00000219066	NM_002528.5	125	cCa/ca																																																																														
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	155	648	5	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	169	818	5	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	129	635	0	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845397	151845397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	353	613	0	ENST00000262189.6:c.13615G>A	p.Val4539Met	p.V4539M	ENST00000262189	NM_170606.2	4539	Gtg/Atg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	300	418	16	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38631981	38631981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	128	506	0	ENST00000299084.4:c.471delT	p.Gln158SerfsTer16	p.Q158Sfs*16	ENST00000299084	NM_152594.2	156	cTt/ct																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226716	2226716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	125	503	0	ENST00000398665.3:c.4196C>A	p.Pro1399His	p.P1399H	ENST00000398665	NM_032482.2	1399	cCc/cAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022358	31022358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	82	372	0	ENST00000375687.4:c.1843G>A	p.Ala615Thr	p.A615T	ENST00000375687	NM_015338.5	615	Gca/Aca																																																																														
KDR	3791	MSKCC	GRCh37	4	55964922	55964922	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199982402		P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	135	396	0	ENST00000263923.4:c.2315C>T	p.Ala772Val	p.A772V	ENST00000263923	NM_002253.2	772	gCg/gTg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202603	67202603	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	123	574	0	ENST00000312629.5:c.1412A>T	p.Lys471Met	p.K471M	ENST00000312629	NM_003952.2	471	aAg/aTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245726	46245726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	92	490	0	ENST00000334344.6:c.3820G>T	p.Gly1274Ter	p.G1274*	ENST00000334344	NM_152641.2	1274	Gga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857995	9857995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	118	553	0	ENST00000330684.3:c.3406G>A	p.Val1136Ile	p.V1136I	ENST00000330684	NM_001134407.1	1136	Gtt/Att																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89354959	89354959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	186	607	2	ENST00000301030.4:c.721G>A	p.Ala241Thr	p.A241T	ENST00000301030	NM_001256183.1	241	Gct/Act																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15976751	15976751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	96	480	0	ENST00000268712.3:c.3803C>T	p.Pro1268Leu	p.P1268L	ENST00000268712	NM_006311.3	1268	cCg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439961	56439962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	183	730	0	ENST00000407977.2:c.630dup	p.Val211CysfsTer48	p.V211Cfs*48	ENST00000407977		210	-/T																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622325	1622325	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	126	680	0	ENST00000344749.5:c.639del	p.Phe214SerfsTer70	p.F214Sfs*70	ENST00000344749	NM_001136139.2	213	ccC/cc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18277996	18277996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	153	622	1	ENST00000222254.8:c.1616G>A	p.Arg539His	p.R539H	ENST00000222254	NM_005027.3	539	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214660	36214660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	119	596	1	ENST00000222270.7:c.3086C>T	p.Pro1029Leu	p.P1029L	ENST00000222270	NM_014727.1	1029	cCc/cTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42797393	42797393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	156	750	0	ENST00000575354.2:c.3755C>A	p.Pro1252His	p.P1252H	ENST00000575354	NM_015125.3	1252	cCt/cAt																																																																														
BBC3	27113	MSKCC	GRCh37	19	47735829	47735829	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			619	128	631	0	ENST00000449228.1:c.31T>C	p.Cys11Arg	p.C11R	ENST00000449228	NM_001127240.2	11	Tgt/Cgt																																																																														
ATR	545	MSKCC	GRCh37	3	142180827	142180827	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	80	379	0	ENST00000350721.4:c.7147A>G	p.Thr2383Ala	p.T2383A	ENST00000350721	NM_001184.3	2383	Act/Gct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542676	187542676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	108	399	0	ENST00000441802.2:c.5064G>A	p.Met1688Ile	p.M1688I	ENST00000441802	NM_005245.3	1688	atG/atA																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755737	57755738	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	152	584	1	ENST00000274289.3:c.49dup	p.Met17AsnfsTer89	p.M17Nfs*89	ENST00000274289	NM_006622.3	17	atg/aAtg																																																																														
TEK	7010	MSKCC	GRCh37	9	27168504	27168504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	100	418	0	ENST00000380036.4:c.376C>T	p.Pro126Ser	p.P126S	ENST00000380036	NM_000459.3	126	Cca/Tca																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400056	139400056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	195	780	1	ENST00000277541.6:c.4292G>A	p.Ser1431Asn	p.S1431N	ENST00000277541	NM_017617.3	1431	aGc/aAc																																																																														
BTK	695	MSKCC	GRCh37	X	100629610	100629610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	79	402	0	ENST00000308731.7:c.154A>G	p.Lys52Glu	p.K52E	ENST00000308731	NM_000061.2	52	Aag/Gag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427251	49427253	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			336	109	659	2	ENST00000301067.7:c.11235_11237del	p.Gln3745del	p.Q3745del	ENST00000301067	NM_003482.3	3745	caGCAc/cac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435845	56435845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	35	564	1	ENST00000407977.2:c.1292G>A	p.Cys431Tyr	p.C431Y	ENST00000407977		431	tGc/tAc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935598	49935598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	39	723	0	ENST00000296474.3:c.1766T>C	p.Leu589Pro	p.L589P	ENST00000296474	NM_002447.2	589	cTg/cCg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31511140	31511140	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0038612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	49	527	0	ENST00000344624.3:c.1432+2T>C		p.X478_splice	ENST00000344624		478																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0044215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	29	446	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	109	746	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577601	7577601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	9	608	0	ENST00000269305.4:c.680C>T	p.Ser227Phe	p.S227F	ENST00000269305	NM_001126112.2	227	tCt/tTt																																																																														
AKT2	208	MSKCC	GRCh37	19	40743980	40743980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	44	623	0	ENST00000392038.2:c.727C>T	p.Arg243Trp	p.R243W	ENST00000392038	NM_001626.4	243	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255170	16255170	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	155	444	0	ENST00000375759.3:c.2439del	p.Val814TrpfsTer44	p.V814Wfs*44	ENST00000375759	NM_015001.2	812	gAa/ga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	156	531	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
JUN	3725	MSKCC	GRCh37	1	59248049	59248052	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	115	450	0	ENST00000371222.2:c.691_694delACAG	p.Thr231CysfsTer29	p.T231Cfs*29	ENST00000371222	NM_002228.3	231	ACAGtg/tg																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551935	150551946	+	inframe_deletion	In_Frame_Del	DEL	GCCGGCCCCCAA	GCCGGCCCCCAA	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	125	426	0	ENST00000369026.2:c.61_72del	p.Leu21_Gly24del	p.L21_G24del	ENST00000369026	NM_021960.4	21	TTGGGGGCCGGC/-																																																																														
PGR	5241	MSKCC	GRCh37	11	100999143	100999143	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	234	747	0	ENST00000325455.5:c.659A>G	p.Glu220Gly	p.E220G	ENST00000325455	NM_001202474.3	220	gAg/gGg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	165	430	8	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	166	395	1	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	248	858	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863467	57863467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	185	562	0	ENST00000228682.2:c.1562G>A	p.Ser521Asn	p.S521N	ENST00000228682	NM_005269.2	521	aGc/aAc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	198	735	15	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
POLE	5426	MSKCC	GRCh37	12	133218430	133218431	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	167	641	0	ENST00000320574.5:c.5180_5181delTG	p.Val1727GlyfsTer57	p.V1727Gfs*57	ENST00000320574	NM_006231.2	1727	gTG/g																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422039	81422040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	108	379	0	ENST00000298171.2:c.17dup	p.Leu6PhefsTer56	p.L6Ffs*56	ENST00000298171	NM_000369.2	5	-/T																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43705410	43705410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	241	875	1	ENST00000382044.4:c.5212G>A	p.Ala1738Thr	p.A1738T	ENST00000382044	NM_001141980.1	1738	Gca/Aca																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727565	66727565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	152	387	0	ENST00000307102.5:c.281T>C	p.Met94Thr	p.M94T	ENST00000307102	NM_002755.3	94	aTg/aCg																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	158	528	3	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465477	99465477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	157	516	0	ENST00000268035.6:c.2302C>T	p.Pro768Ser	p.P768S	ENST00000268035	NM_000875.3	768	Ccg/Tcg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	188	615	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	487	705	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740789	58740789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	203	600	0	ENST00000305921.3:c.1694G>A	p.Ser565Asn	p.S565N	ENST00000305921	NM_003620.3	565	aGt/aAt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	180	535	0	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244358	5244358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	306	788	3	ENST00000357368.4:c.1124C>T	p.Pro375Leu	p.P375L	ENST00000357368	NM_002850.3	375	cCg/cTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	184	739	1	ENST00000340748.4:c.2152delA	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945988	17945988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	308	876	0	ENST00000458235.1:c.1951C>T	p.Arg651Trp	p.R651W	ENST00000458235	NM_000215.3	651	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	288	907	6	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
CIC	23152	MSKCC	GRCh37	19	42797411	42797411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	207	877	0	ENST00000575354.2:c.3773G>A	p.Ser1258Asn	p.S1258N	ENST00000575354	NM_015125.3	1258	aGc/aAc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660306	227660307	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	155	556	0	ENST00000305123.5:c.3148dup	p.Ala1050GlyfsTer31	p.A1050Gfs*31	ENST00000305123	NM_005544.2	1050	gca/gGca																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022485	31022486	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	100	403	0	ENST00000375687.4:c.1973dup	p.Gly659ArgfsTer9	p.G659Rfs*9	ENST00000375687	NM_015338.5	657	gag/gaGg																																																																														
SRC	6714	MSKCC	GRCh37	20	36012725	36012725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1432190943		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	61	92	0	ENST00000358208.4:c.169G>A	p.Ala57Thr	p.A57T	ENST00000358208		57	Gcg/Acg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713673	30713673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	172	502	0	ENST00000359013.4:c.1073T>C	p.Leu358Pro	p.L358P	ENST00000359013	NM_001024847.2	358	cTa/cCa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	234	783	3	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52582242	52582242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	85	227	0	ENST00000394830.3:c.4586G>A	p.Arg1529His	p.R1529H	ENST00000394830	NM_018313.4	1529	cGc/cAc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247426	71247426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200643313		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	177	555	0	ENST00000318789.4:c.107G>A	p.Arg36Gln	p.R36Q	ENST00000318789	NM_032682.5	36	cGg/cAg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119634948	119634948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	112	303	0	ENST00000316626.5:c.551C>T	p.Pro184Leu	p.P184L	ENST00000316626		184	cCg/cTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55964971	55964971	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	22	263	0	ENST00000263923.4:c.2267-1G>T		p.X756_splice	ENST00000263923	NM_002253.2	756																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323147	31323147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	46	712	0	ENST00000412585.2:c.842A>G	p.Tyr281Cys	p.Y281C	ENST00000412585	NM_005514.6	281	tAc/tGc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815698	32815698	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	442	776	1	ENST00000354258.4:c.1918C>T	p.Gln640Ter	p.Q640*	ENST00000354258	NM_000593.5	640	Cag/Tag																																																																														
SMO	6608	MSKCC	GRCh37	7	128845228	128845228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	38	509	0	ENST00000249373.3:c.722C>T	p.Thr241Met	p.T241M	ENST00000249373	NM_005631.4	241	aCg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	249	447	9	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929498	44929498	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	215	558	0	ENST00000377967.4:c.2598del	p.Met866IlefsTer32	p.M866Ifs*32	ENST00000377967	NM_021140.2	866	atG/at																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045483	47045483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	214	632	1	ENST00000329236.7:c.2216G>A	p.Arg739His	p.R739H	ENST00000329236	NM_001204466.1	739	cGt/cAt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412248	63412248	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0044217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	243	935	0	ENST00000330258.3:c.919del	p.Asp307ThrfsTer3	p.D307Tfs*3	ENST00000330258	NM_152424.3	307	Gac/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578259	7578259	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	1017	729	0	ENST00000269305.4:c.590T>A	p.Val197Glu	p.V197E	ENST00000269305	NM_001126112.2	197	gTg/gAg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43720258	43720258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	423	588	0	ENST00000382044.4:c.3784G>A	p.Val1262Met	p.V1262M	ENST00000382044	NM_001141980.1	1262	Gtg/Atg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79965971	79965971	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	400	576	0	ENST00000265081.6:c.635A>G	p.Asn212Ser	p.N212S	ENST00000265081	NM_002439.4	212	aAt/aGt																																																																														
MET	4233	MSKCC	GRCh37	7	116371753	116371753	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201154533		P-0044256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	337	364	1	ENST00000397752.3:c.1232C>T	p.Ala411Val	p.A411V	ENST00000397752	NM_000245.2	411	gCg/gTg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013345-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	367	591	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
RB1	5925	MSKCC	GRCh37	13	48878144	48878144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013345-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			71	64	83	0	ENST00000267163.4:c.96C>A	p.Asp32Glu	p.D32E	ENST00000267163	NM_000321.2	32	gaC/gaA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522461	187522461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013345-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	138	406	0	ENST00000441802.2:c.11602G>T	p.Val3868Phe	p.V3868F	ENST00000441802	NM_005245.3	3868	Gtc/Ttc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013345-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	174	404	5	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289737	15289737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013345-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2769	235	834	0	ENST00000263388.2:c.3734C>T	p.Thr1245Ile	p.T1245I	ENST00000263388	NM_000435.2	1245	aCt/aTt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442567	52442567	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	134	584	1	ENST00000460680.1:c.178C>T	p.Arg60Ter	p.R60*	ENST00000460680	NM_004656.3	60	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41551085	41551085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	111	654	0	ENST00000263253.7:c.3229C>A	p.Gln1077Lys	p.Q1077K	ENST00000263253	NM_001429.3	1077	Caa/Aaa																																																																														
VHL	7428	MSKCC	GRCh37	3	10188297	10188309	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTTGCCAATAT	TTTTTGCCAATAT	-			P-0044191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	104	698	0	ENST00000256474.2:c.440_452del	p.Ile147ThrfsTer8	p.I147Tfs*8	ENST00000256474	NM_000551.3	147	aTTTTTGCCAATATc/ac																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139802576	139802576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	276	1168	2	ENST00000247668.2:c.421G>A	p.Gly141Ser	p.G141S	ENST00000247668	NM_021138.3	141	Ggc/Agc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923606	39923606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	240	483	0	ENST00000378444.4:c.3485G>C	p.Arg1162Pro	p.R1162P	ENST00000378444	NM_001123385.1	1162	cGc/cCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	202	277	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29587511	29587511	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	71	283	0	ENST00000358273.4:c.4557delG	p.Gln1520SerfsTer54	p.Q1520Sfs*54	ENST00000358273	NM_001042492.2	1519	Ggg/gg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601234	28601234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	231	268	0	ENST00000241453.7:c.2198C>T	p.Pro733Leu	p.P733L	ENST00000241453	NM_004119.2	733	cCa/cTa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198281609	198281609	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	292	311	1	ENST00000335508.6:c.522A>T	p.Glu174Asp	p.E174D	ENST00000335508	NM_012433.2	174	gaA/gaT																																																																														
NBN	4683	MSKCC	GRCh37	8	90982787	90982787	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0044253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	110	164	0	ENST00000265433.3:c.703-2A>T		p.X235_splice	ENST00000265433	NM_002485.4	235																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8517949	8517949	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	13	296	0	ENST00000356435.5:c.1442A>T	p.Asn481Ile	p.N481I	ENST00000356435		481	aAc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579480	7579480	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009679-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	411	578	0	ENST00000269305.4:c.207del	p.Ala70LeufsTer53	p.A70Lfs*53	ENST00000269305	NM_001126112.2	69	gcT/gc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016549-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			567	482	657	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016549-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			303	150	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088759	27088759	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016549-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			336	577	664	2	ENST00000324856.7:c.2368C>T	p.Gln790Ter	p.Q790*	ENST00000324856	NM_006015.4	790	Cag/Tag																																																																														
TET1	80312	MSKCC	GRCh37	10	70406235	70406235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016549-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			542	225	627	0	ENST00000373644.4:c.3749C>T	p.Ser1250Leu	p.S1250L	ENST00000373644	NM_030625.2	1250	tCa/tTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29592301	29592301	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016549-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			312	132	329	0	ENST00000358273.4:c.4779del	p.Tyr1594ThrfsTer30	p.Y1594Tfs*30	ENST00000358273	NM_001042492.2	1593	ttC/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	40	328	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	1005	822	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011144	12011144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	202	218	0	ENST00000353533.5:c.551C>T	p.Ser184Leu	p.S184L	ENST00000353533	NM_003010.3	184	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	234	364	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221297	36221297	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	1032	941	1	ENST00000222270.7:c.5131G>C	p.Glu1711Gln	p.E1711Q	ENST00000222270	NM_014727.1	1711	Gag/Cag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482345	56482345	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	224	601	0	ENST00000267101.3:c.893A>T	p.Gln298Leu	p.Q298L	ENST00000267101	NM_001982.3	298	cAa/cTa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95596451	95596451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	124	266	0	ENST00000343455.3:c.517G>T	p.Val173Leu	p.V173L	ENST00000343455	NM_177438.2	173	Gtg/Ttg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797870	42797870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	934	934	0	ENST00000575354.2:c.3922G>C	p.Glu1308Gln	p.E1308Q	ENST00000575354	NM_015125.3	1308	Gag/Cag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248540	212248540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	301	536	0	ENST00000342788.4:c.3727T>C	p.Trp1243Arg	p.W1243R	ENST00000342788	NM_005235.2	1243	Tgg/Cgg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164790	36164790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	1068	1008	0	ENST00000300305.3:c.1085C>G	p.Ser362Trp	p.S362W	ENST00000300305		362	tCg/tGg																																																																														
BCL6	604	MSKCC	GRCh37	3	187444650	187444650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	247	445	0	ENST00000232014.4:c.1577G>T	p.Arg526Leu	p.R526L	ENST00000232014	NM_001130845.1	526	cGc/cTc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957455	1957455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	313	585	0	ENST00000382891.5:c.2554G>T	p.Ala852Ser	p.A852S	ENST00000382891	NM_133335.3	852	Gcc/Tcc																																																																														
KDR	3791	MSKCC	GRCh37	4	55968096	55968096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	196	387	0	ENST00000263923.4:c.2234G>C	p.Cys745Ser	p.C745S	ENST00000263923	NM_002253.2	745	tGt/tCt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508097	106508097	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	240	241	0	ENST00000359195.3:c.91A>T	p.Ser31Cys	p.S31C	ENST00000359195	NM_002649.2	31	Agc/Tgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393635	139393635	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	1034	899	0	ENST00000277541.6:c.6011G>C	p.Arg2004Pro	p.R2004P	ENST00000277541	NM_017617.3	2004	cGc/cCc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	34	120	2	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	59	148	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	109	315	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	345	234	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	156	201	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223796	53223796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	539	308	0	ENST00000375401.3:c.3563G>C	p.Cys1188Ser	p.C1188S	ENST00000375401	NM_004187.3	1188	tGt/tCt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	668	458	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	27	90	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	87	192	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105841	27105841	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	220	320	1	ENST00000324856.7:c.5452C>T	p.Gln1818Ter	p.Q1818*	ENST00000324856	NM_006015.4	1818	Cag/Tag																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	382	492	4	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	329	539	4	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
STK11	6794	MSKCC	GRCh37	19	1207153	1207155	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1414068445		P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1262	435	524	0	ENST00000326873.7:c.250_252del	p.Lys84del	p.K84del	ENST00000326873	NM_000455.4	81	AAG/-																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	263	291	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																														
AC008738.1	0	MSKCC	GRCh37	19	33792755	33792757	+	splice_acceptor_variant,intron_variant,non_coding_transcript_variant	Splice_Site	DEL	GGC	GGC	-	rs781757114		P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	10	51	0	ENST00000425420.2:n.247-4_247-2del		p.X83_splice	ENST00000425420		83																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	181	255	3	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	227	327	8	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130702	29130702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	179	234	2	ENST00000328354.6:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000328354	NM_007194.3	3	cGg/cAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	198	249	0	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223599	53223599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	314	175	0	ENST00000375401.3:c.3760C>T	p.Arg1254Cys	p.R1254C	ENST00000375401	NM_004187.3	1254	Cgc/Tgc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332152	70332153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	92	136	0	ENST00000373644.4:c.65dup	p.Lys23GlufsTer37	p.K23Efs*37	ENST00000373644	NM_030625.2	19	-/A																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905061	50905061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	362	412	2	ENST00000440232.2:c.347delC	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	115	Ccc/cc																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	87	197	0	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123836	46123837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	143	194	2	ENST00000334344.6:c.109dupA	p.Ile37AsnfsTer29	p.I37Nfs*29	ENST00000334344	NM_152641.2	34	-/A																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221765	55221765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	345	490	0	ENST00000275493.2:c.809A>G	p.Tyr270Cys	p.Y270C	ENST00000275493	NM_005228.3	270	tAc/tGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	277	353	0	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	343	410	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213242	39213243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	363	492	3	ENST00000402219.2:c.3724dup	p.Ser1242LysfsTer2	p.S1242Kfs*2	ENST00000402219	NM_005633.3	1242	agt/aAgt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440861	52440861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	364	487	3	ENST00000460680.1:c.643G>A	p.Gly215Ser	p.G215S	ENST00000460680	NM_004656.3	215	Ggc/Agc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	57	85	1	ENST00000262189.6:c.427delA	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																														
ALK	238	MSKCC	GRCh37	2	29451783	29451784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	171	457	0	ENST00000389048.3:c.2781dup	p.Cys928ValfsTer20	p.C928Vfs*20	ENST00000389048	NM_004304.4	927	-/G																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095625	178095625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	55	139	0	ENST00000397062.3:c.1706G>A	p.Arg569His	p.R569H	ENST00000397062	NM_006164.4	569	cGt/cAt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001188	150001188	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	56	153	0	ENST00000253339.5:c.2416C>T	p.Arg806Ter	p.R806*	ENST00000253339		806	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133241894	133241894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	342	398	1	ENST00000320574.5:c.2462G>A	p.Arg821His	p.R821H	ENST00000320574	NM_006231.2	821	cGc/cAc																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73047240	73047240	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	35	144	0	ENST00000356692.5:c.51delG	p.Lys19ArgfsTer14	p.K19Rfs*14	ENST00000356692		16	aGg/ag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115251216	115251216	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	87	215	0	ENST00000369535.4:c.510del	p.Lys170AsnfsTer19	p.K170Nfs*19	ENST00000369535	NM_002524.4	170	aaA/aa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988308	36988309	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	285	303	0	ENST00000354822.5:c.344dup	p.Tyr116LeufsTer323	p.Y116Lfs*323	ENST00000354822	NM_001079668.2	115	ggc/ggGc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128420046	128420047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	76	241	0	ENST00000265960.3:c.381dup	p.Ser128IlefsTer28	p.S128Ifs*28	ENST00000265960	NM_001006617.1	127	-/A																																																																														
MGA	23269	MSKCC	GRCh37	15	42042736	42042736	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	96	187	0	ENST00000219905.7:c.6934del	p.Thr2312LeufsTer23	p.T2312Lfs*23	ENST00000219905	NM_001164273.1	2311	Aaa/aa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190815	11190815	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	233	294	0	ENST00000361445.4:c.5384T>C	p.Val1795Ala	p.V1795A	ENST00000361445	NM_004958.3	1795	gTg/gCg																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45795061	45795061	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	343	443	0	ENST00000372115.3:c.1525del	p.Arg509AlafsTer48	p.R509Afs*48	ENST00000372115	NM_001048171.1	509	Cgc/gc																																																																														
WT1	7490	MSKCC	GRCh37	11	32410725	32410725	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	166	234	0	ENST00000332351.3:c.1433G>A	p.Ser478Asn	p.S478N	ENST00000332351	NM_024426.4	478	aGt/aAt																																																																														
ATM	472	MSKCC	GRCh37	11	108172450	108172450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	48	122	0	ENST00000278616.4:c.5253G>T	p.Glu1751Asp	p.E1751D	ENST00000278616	NM_000051.3	1751	gaG/gaT																																																																														
POLE	5426	MSKCC	GRCh37	12	133245483	133245483	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200471266		P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	340	448	1	ENST00000320574.5:c.1837G>A	p.Val613Ile	p.V613I	ENST00000320574	NM_006231.2	613	Gtt/Att																																																																														
MGA	23269	MSKCC	GRCh37	15	42042098	42042098	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	34	177	0	ENST00000219905.7:c.6293T>C	p.Val2098Ala	p.V2098A	ENST00000219905	NM_001164273.1	2098	gTc/gCc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820686	3820686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1254	502	593	0	ENST00000262367.5:c.2765C>T	p.Ala922Val	p.A922V	ENST00000262367	NM_004380.2	922	gCc/gTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822378	72822378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1552	95	601	0	ENST00000268489.5:c.9797C>T	p.Thr3266Met	p.T3266M	ENST00000268489	NM_006885.3	3266	aCg/aTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868240	37868240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	355	502	0	ENST00000269571.5:c.961G>A	p.Glu321Lys	p.E321K	ENST00000269571		321	Gag/Aag																																																																														
RARA	5914	MSKCC	GRCh37	17	38508727	38508727	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	323	468	0	ENST00000254066.5:c.775A>G	p.Thr259Ala	p.T259A	ENST00000254066	NM_000964.3	259	Acc/Gcc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622310	1622310	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	355	377	0	ENST00000344749.5:c.652+2T>C		p.X218_splice	ENST00000344749	NM_001136139.2	218																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18273911	18273911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	329	447	0	ENST00000222254.8:c.1244C>T	p.Ala415Val	p.A415V	ENST00000222254	NM_005027.3	415	gCc/gTc																																																																														
REL	5966	MSKCC	GRCh37	2	61147239	61147239	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	50	175	0	ENST00000295025.8:c.917A>T	p.Asp306Val	p.D306V	ENST00000295025	NM_002908.2	306	gAt/gTt																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326314	62326314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	398	531	1	ENST00000508582.2:c.3406del	p.Leu1136CysfsTer24	p.L1136Cfs*24	ENST00000508582		1134	ttC/tt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37061831	37061832	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	204	323	0	ENST00000231790.2:c.917dup	p.Asn306LysfsTer8	p.N306Kfs*8	ENST00000231790	NM_000249.3	305	-/A																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169940552	169940552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	313	458	0	ENST00000295797.4:c.95A>G	p.Tyr32Cys	p.Y32C	ENST00000295797	NM_002740.5	32	tAc/tGc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198063	185198063	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	135	201	0	ENST00000265026.3:c.2545A>G	p.Ser849Gly	p.S849G	ENST00000265026	NM_004721.4	849	Agc/Ggc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549406	187549406	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	426	513	0	ENST00000441802.2:c.4712T>C	p.Val1571Ala	p.V1571A	ENST00000441802	NM_005245.3	1571	gTt/gCt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628925	187628925	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	235	289	0	ENST00000441802.2:c.2057A>T	p.Lys686Met	p.K686M	ENST00000441802	NM_005245.3	686	aAg/aTg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751921	57751921	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	287	398	0	ENST00000274289.3:c.1316A>G	p.Gln439Arg	p.Q439R	ENST00000274289	NM_006622.3	439	cAg/cGg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672728	86672728	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	41	93	0	ENST00000274376.6:c.2215T>C	p.Tyr739His	p.Y739H	ENST00000274376	NM_002890.2	739	Tat/Cat																																																																														
APC	324	MSKCC	GRCh37	5	112174049	112174049	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	83	136	0	ENST00000257430.4:c.2758A>G	p.Asn920Asp	p.N920D	ENST00000257430	NM_000038.5	920	Aat/Gat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188914	32188914	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs142208667		P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	683	482	0	ENST00000375023.3:c.640A>G	p.Thr214Ala	p.T214A	ENST00000375023	NM_004557.3	214	Acc/Gcc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32819922	32819922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	828	543	0	ENST00000354258.4:c.988C>T	p.Arg330Cys	p.R330C	ENST00000354258	NM_000593.5	330	Cgc/Tgc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099558	157099558	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	79	120	0	ENST00000346085.5:c.495T>G	p.Ser165Arg	p.S165R	ENST00000346085	NM_020732.3	165	agT/agG																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099581	157099581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	58	78	1	ENST00000346085.5:c.518C>T	p.Pro173Leu	p.P173L	ENST00000346085	NM_020732.3	173	cCc/cTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81331961	81331961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	40	95	0	ENST00000222390.5:c.2123G>A	p.Arg708Gln	p.R708Q	ENST00000222390	NM_000601.4	708	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945037	151945037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	20	172	0	ENST00000262189.6:c.2482C>T	p.Pro828Ser	p.P828S	ENST00000262189	NM_170606.2	828	Cca/Tca																																																																														
SYK	6850	MSKCC	GRCh37	9	93624547	93624547	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	286	413	1	ENST00000375746.1:c.638T>C	p.Val213Ala	p.V213A	ENST00000375746	NM_001174167.1	213	gTg/gCg																																																																														
SYK	6850	MSKCC	GRCh37	9	93627372	93627372	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	136	248	0	ENST00000375746.1:c.839A>C	p.His280Pro	p.H280P	ENST00000375746	NM_001174167.1	280	cAt/cCt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328398	137328398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	419	500	0	ENST00000481739.1:c.1330del	p.Asp444ThrfsTer18	p.D444Tfs*18	ENST00000481739	NM_002957.4	443	Ggg/gg																																																																														
AR	367	MSKCC	GRCh37	X	66766016	66766016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	403	279	0	ENST00000374690.3:c.1028C>G	p.Ser343Cys	p.S343C	ENST00000374690	NM_000044.3	343	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0043942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	164	446	1	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111884756	111884756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148319611		P-0043942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	90	425	1	ENST00000341259.2:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000341259	NM_005475.2	282	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	67	251	0	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25964971	25964971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	60	334	0	ENST00000435504.4:c.4235G>T	p.Gly1412Val	p.G1412V	ENST00000435504		1412	gGc/gTc																																																																														
RET	5979	MSKCC	GRCh37	10	43620411	43620411	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	57	346	0	ENST00000355710.3:c.3020A>G	p.Lys1007Arg	p.K1007R	ENST00000355710	NM_020975.4	1007	aAg/aGg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914584	32914584	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	34	154	0	ENST00000380152.3:c.6092C>G	p.Thr2031Ser	p.T2031S	ENST00000380152		2031	aCt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	93	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098803	178098803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	118	559	0	ENST00000397062.3:c.242G>A	p.Gly81Asp	p.G81D	ENST00000397062	NM_006164.4	81	gGt/gAt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	13	246	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	82	344	0	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098806	178098806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	31	547	0	ENST00000397062.3:c.239C>T	p.Thr80Ile	p.T80I	ENST00000397062	NM_006164.4	80	aCa/aTa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591977	48591977	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	67	249	0	ENST00000342988.3:c.1139+1G>A		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11132621	11132621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	215	847	0	ENST00000344626.4:c.2837C>T	p.Pro946Leu	p.P946L	ENST00000344626	NM_003072.3	946	cCc/cTc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098808	178098808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	120	555	0	ENST00000397062.3:c.237G>C	p.Glu79Asp	p.E79D	ENST00000397062	NM_006164.4	79	gaG/gaC																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651388	52651388	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	110	394	0	ENST00000394830.3:c.1708A>C	p.Ile570Leu	p.I570L	ENST00000394830	NM_018313.4	570	Ata/Cta																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271490	26271491	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	46	424	0	ENST00000305910.3:c.122_123del	p.Arg41LeufsTer19	p.R41Lfs*19	ENST00000305910	NM_003534.2	41	cGC/c																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64288346	64288346	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	10	209	0	ENST00000370651.3:c.110T>G	p.Leu37Arg	p.L37R	ENST00000370651	NM_003463.4	37	cTt/cGt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038564	47038564	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0044116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	144	368	0	ENST00000329236.7:c.493+2T>C		p.X165_splice	ENST00000329236	NM_001204466.1	165																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	27	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577554	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAG	TGCAG	-			P-0044117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	54	704	0	ENST00000269305.4:c.723_727del	p.Cys242GlyfsTer20	p.C242Gfs*20	ENST00000269305	NM_001126112.2	241	tcCTGCAtg/tctg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581162	48581186	+	frameshift_variant	Frame_Shift_Del	DEL	ATGATGGTGAAGGATGAATATGTGC	ATGATGGTGAAGGATGAATATGTGC	-			P-0044117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	21	307	0	ENST00000342988.3:c.470_494del	p.Met157ThrfsTer37	p.M157Tfs*37	ENST00000342988	NM_005359.5	156	ATGATGGTGAAGGATGAATATGTGCat/at																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522658	67522670	+	frameshift_variant	Frame_Shift_Del	DEL	AAATTGGCTGGTT	AAATTGGCTGGTT	-			P-0044117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	16	323	0	ENST00000274335.5:c.159_171del	p.Ile53MetfsTer18	p.I53Mfs*18	ENST00000274335		52	gAAATTGGCTGGTTa/ga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504270	8504270	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0044117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	22	485	0	ENST00000356435.5:c.1813A>C	p.Met605Leu	p.M605L	ENST00000356435		605	Atg/Ctg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652305	48652305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0044117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	48	578	0	ENST00000376670.3:c.976G>A	p.Ala326Thr	p.A326T	ENST00000376670	NM_002049.3	326	Gca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	87	462	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	107	360	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
APC	324	MSKCC	GRCh37	5	112137036	112137036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	147	466	0	ENST00000257430.4:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000257430	NM_000038.5	264	Caa/Taa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627976	37627976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	119	543	3	ENST00000447079.4:c.1891C>T	p.Pro631Ser	p.P631S	ENST00000447079	NM_015083.1	631	Ccc/Tcc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120372	70120372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	779	1363	0	ENST00000245479.2:c.1376del	p.Gly459AlafsTer11	p.G459Afs*11	ENST00000245479	NM_000346.3	458	caG/ca																																																																														
CASP8	841	MSKCC	GRCh37	2	202149911	202149911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	257	708	1	ENST00000358485.4:c.1352A>T	p.Tyr451Phe	p.Y451F	ENST00000358485	NM_001080125.1	451	tAt/tTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162062	47162062	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	66	401	0	ENST00000409792.3:c.4064A>T	p.Lys1355Ile	p.K1355I	ENST00000409792	NM_014159.6	1355	aAa/aTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155209	55155209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	217	546	0	ENST00000257290.5:c.2808G>T	p.Glu936Asp	p.E936D	ENST00000257290	NM_006206.4	936	gaG/gaT																																																																														
APC	324	MSKCC	GRCh37	5	112175432	112175433	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TA			P-0044124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	81	336	1	ENST00000257430.4:c.4141_4142delinsTA	p.Pro1381Ter	p.P1381*	ENST00000257430	NM_000038.5	1381	CCa/TAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0044167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	22	172	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0044167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	28	460	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48881535	48881671	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTATTGGTAAGGATTTTCTTAAAACGTTTTGAAATTTTTTTTTCTCATTTTAAAAACAACTTCAAATCACTATACAAAAATTGAAAGATAGAAAAATATAAAGACAATAAAAGCTAATAATAATTCCATTACCCA	GAGTATTGGTAAGGATTTTCTTAAAACGTTTTGAAATTTTTTTTTCTCATTTTAAAAACAACTTCAAATCACTATACAAAAATTGAAAGATAGAAAAATATAAAGACAATAAAAGCTAATAATAATTCCATTACCCA	-			P-0044176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	82	194	0	ENST00000267163.4:c.260_264+132del		p.X87_splice	ENST00000267163	NM_000321.2	87																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0044055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	45	462	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933782	49933782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	15	577	0	ENST00000296474.3:c.2495G>A	p.Arg832Gln	p.R832Q	ENST00000296474	NM_002447.2	832	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	237	740	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
BTK	695	MSKCC	GRCh37	X	100625055	100625055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	125	702	0	ENST00000308731.7:c.322G>A	p.Glu108Lys	p.E108K	ENST00000308731	NM_000061.2	108	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717731	89717732	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			131	223	585	0	ENST00000371953.3:c.757dupA	p.Ile253AsnfsTer45	p.I253Nfs*45	ENST00000371953	NM_000314.4	252	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7579329	7579330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	412	931	0	ENST00000269305.4:c.357dup	p.Lys120GlnfsTer29	p.K120Qfs*29	ENST00000269305	NM_001126112.2	119	-/C																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099896	27099896	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149538231		P-0004768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	48	843	0	ENST00000324856.7:c.3775C>T	p.Pro1259Ser	p.P1259S	ENST00000324856	NM_006015.4	1259	Ccc/Tcc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743828	46743828	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	86	1019	0	ENST00000371975.4:c.2118G>A	p.Trp706Ter	p.W706*	ENST00000371975	NM_003579.3	706	tgG/tgA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912996	32912996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	25	780	0	ENST00000380152.3:c.4504C>G	p.Gln1502Glu	p.Q1502E	ENST00000380152		1502	Caa/Gaa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045806	180045806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	66	1048	0	ENST00000261937.6:c.2965G>A	p.Glu989Lys	p.E989K	ENST00000261937	NM_182925.4	989	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033719-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	16	275	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0033719-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	20	334	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033719-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			607	36	801	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033719-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	57	432	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033719-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	57	432	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033719-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	57	432	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	110	373	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089730	27089730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	148	467	0	ENST00000324856.7:c.2686G>A	p.Glu896Lys	p.E896K	ENST00000324856	NM_006015.4	896	Gaa/Aaa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134988	41134988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036062-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	55	186	0	ENST00000379561.5:c.640C>A	p.Arg214Ser	p.R214S	ENST00000379561	NM_002015.3	214	Cgt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	139	742	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	33	405	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041178	47041178	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	157	441	0	ENST00000329236.7:c.1374del	p.Lys458AsnfsTer168	p.K458Nfs*168	ENST00000329236	NM_001204466.1	458	Aaa/aa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134598	2134598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	188	993	1	ENST00000219476.3:c.4375C>T	p.Arg1459Ter	p.R1459*	ENST00000219476	NM_000548.3	1459	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482340	56482341	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0043959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	187	540	1	ENST00000267101.3:c.888_889delinsTT	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	296	gtGGat/gtTTat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105897	27105898	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0043959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	163	594	0	ENST00000324856.7:c.5510_5511dup	p.Asp1838LeufsTer46	p.D1838Lfs*46	ENST00000324856	NM_006015.4	1836	-/TT																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716389	18716389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	46	318	0	ENST00000266497.5:c.3736C>T	p.His1246Tyr	p.H1246Y	ENST00000266497		1246	Cac/Tac																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437733	110437733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	177	862	0	ENST00000375856.3:c.668C>T	p.Ala223Val	p.A223V	ENST00000375856	NM_003749.2	223	gCg/gTg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86633679	86633877	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTTACATTTTTCAATATAATACTATCCCTATCCTATTTTGTGGTATATGACTATTCTAATCTCTGTATTTAAAATTTTTAAATTTAATAACTTTAAAATTGCTATTTTCAGTTTCTTAAAAGGAGATATGTTCATTGTTCATAATGAATTAGAAGATGGATGGATGTGGGTTACAAATTTAAGAACAGATGAACAAGG	CCTTACATTTTTCAATATAATACTATCCCTATCCTATTTTGTGGTATATGACTATTCTAATCTCTGTATTTAAAATTTTTAAATTTAATAACTTTAAAATTGCTATTTTCAGTTTCTTAAAAGGAGATATGTTCATTGTTCATAATGAATTAGAAGATGGATGGATGTGGGTTACAAATTTAAGAACAGATGAACAAGG	-			P-0043959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	10	37	0	ENST00000274376.6:c.900-107_991del		p.X300_splice	ENST00000274376	NM_002890.2	300																																																																															
PREX2	80243	MSKCC	GRCh37	8	69143611	69143611	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0043959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	58	319	0	ENST00000288368.4:c.4819T>A	p.Ter1607ArgextTer13	p.*1607Rext*13	ENST00000288368	NM_024870.2	1607	Tga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0043966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	223	810	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	48934218	48934218	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	49	388	0	ENST00000267163.4:c.673del	p.Tyr225IlefsTer39	p.Y225Ifs*39	ENST00000267163	NM_000321.2	225	Tat/at																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859262	151859286	+	frameshift_variant	Frame_Shift_Del	DEL	TGAACAAATACTGCCCTCAGGTTTT	TGAACAAATACTGCCCTCAGGTTTT	-			P-0043966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	27	316	0	ENST00000262189.6:c.11376_11400del	p.Pro3794MetfsTer9	p.P3794Mfs*9	ENST00000262189	NM_170606.2	3792	caAAAACCTGAGGGCAGTATTTGTTCA/ca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	39	292	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	246	551	2	ENST00000269305.4:c.608_609dup	p.Glu204TrpfsTer44	p.E204Wfs*44	ENST00000269305	NM_001126112.2	203	-/TG																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	84	279	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260064	19260064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	458	701	1	ENST00000162023.5:c.229G>A	p.Glu77Lys	p.E77K	ENST00000162023		77	Gag/Aag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066687	94066687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	154	372	1	ENST00000369303.4:c.1072G>T	p.Gly358Trp	p.G358W	ENST00000369303	NM_004440.3	358	Ggg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539725	187539725	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	55	299	0	ENST00000441802.2:c.8015T>G	p.Phe2672Cys	p.F2672C	ENST00000441802	NM_005245.3	2672	tTt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112162919	112162919	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	18	305	0	ENST00000257430.4:c.1523T>A	p.Leu508Ter	p.L508*	ENST00000257430	NM_000038.5	508	tTg/tAg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577290	64577291	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0044031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	450	714	0	ENST00000337652.1:c.291_292del	p.Ile97MetfsTer19	p.I97Mfs*19	ENST00000337652	NM_130803.2	97	atCCga/atga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248356	212248356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	73	208	0	ENST00000342788.4:c.3911G>A	p.Arg1304Gln	p.R1304Q	ENST00000342788	NM_005235.2	1304	cGg/cAg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702661	52702662	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TC	TC	-			P-0044031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	96	207	0	ENST00000394830.3:c.237-1_237del		p.X79_splice	ENST00000394830	NM_018313.4	79																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287355	38287355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	68	648	0	ENST00000425967.3:c.302G>A	p.Arg101Gln	p.R101Q	ENST00000425967	NM_001174067.1	101	cGg/cAg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798741	135798741	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0044031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	116	174	0	ENST00000298552.3:c.502A>T	p.Lys168Ter	p.K168*	ENST00000298552	NM_001162426.1	168	Aaa/Taa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225339003	225339003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0044042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	27	494	1	ENST00000264414.4:c.2266C>T	p.Arg756Ter	p.R756*	ENST00000264414	NM_003590.4	756	Cga/Tga																																																																														
ETV6	2120	MSKCC	GRCh37	12	12006417	12006417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	52	626	0	ENST00000396373.4:c.385C>T	p.Leu129Phe	p.L129F	ENST00000396373	NM_001987.4	129	Ctt/Ttt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868332	45868332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0044042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	50	1107	0	ENST00000391945.4:c.445G>A	p.Asp149Asn	p.D149N	ENST00000391945	NM_000400.3	149	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			30	151	560	0	ENST00000269305.4:c.800G>A	p.Arg267Gln	p.R267Q	ENST00000269305	NM_001126112.2	267	cGg/cAg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001231	150001231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			47	80	415	0	ENST00000253339.5:c.2373G>A	p.Met791Ile	p.M791I	ENST00000253339		791	atG/atA																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224578	53224579	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0014310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			53	149	615	0	ENST00000375401.3:c.3133_3134dup	p.Pro1046ThrfsTer10	p.P1046Tfs*10	ENST00000375401	NM_004187.3	1045	tac/taTAc																																																																														
ATM	472	MSKCC	GRCh37	11	108117715	108117715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			89	24	197	0	ENST00000278616.4:c.926G>C	p.Arg309Thr	p.R309T	ENST00000278616	NM_000051.3	309	aGa/aCa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40874891	40874891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	107	525	0	ENST00000428826.2:c.409G>A	p.Asp137Asn	p.D137N	ENST00000428826		137	Gat/Aat																																																																														
ALK	238	MSKCC	GRCh37	2	29432682	29432682	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	102	599	0	ENST00000389048.3:c.3806G>C	p.Gly1269Ala	p.G1269A	ENST00000389048	NM_004304.4	1269	gGa/gCa																																																																														
ALK	238	MSKCC	GRCh37	2	29445213	29445213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			130	80	569	0	ENST00000389048.3:c.3512T>C	p.Ile1171Thr	p.I1171T	ENST00000389048	NM_004304.4	1171	aTc/aCc																																																																														
ALK	238	MSKCC	GRCh37	2	29446244	29446244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			126	122	574	0	ENST00000389048.3:c.3323T>C	p.Leu1108Pro	p.L1108P	ENST00000389048	NM_004304.4	1108	cTg/cCg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029787-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1335	878	714	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0029787-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			74	981	489	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190345	32190345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029787-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			525	233	746	0	ENST00000375023.3:c.394N>T	p.Arg132Cys	p.R132C	ENST00000375023	NM_004557.3	132	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029787-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1624	661	720	0	ENST00000275493.2:c.2389T>G	p.Cys797Gly	p.C797G	ENST00000275493	NM_005228.3	797	Tgc/Ggc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445088	89445088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029787-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			299	43	401	0	ENST00000336596.2:c.1408T>G	p.Tyr470Asp	p.Y470D	ENST00000336596	NM_005233.5	470	Tac/Gac																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	137	362	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0004654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			841	320	769	0	ENST00000346208.3:c.1002_1003dup	p.Asp335GlyfsTer21	p.D335Gfs*21	ENST00000346208		333	-/GG																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442575	52442575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	275	526	0	ENST00000460680.1:c.170G>A	p.Arg57Gln	p.R57Q	ENST00000460680	NM_004656.3	57	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577084	7577084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010487-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	97	927	0	ENST00000269305.4:c.854A>T	p.Glu285Val	p.E285V	ENST00000269305	NM_001126112.2	285	gAg/gTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0010487-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			808	73	642	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
BCL6	604	MSKCC	GRCh37	3	187442788	187442788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010487-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			727	50	579	0	ENST00000232014.4:c.1918C>T	p.Arg640Trp	p.R640W	ENST00000232014	NM_001130845.1	640	Cgg/Tgg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59924478	59924478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015479-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			142	103	319	0	ENST00000259008.2:c.611C>A	p.Ser204Tyr	p.S204Y	ENST00000259008	NM_032043.2	204	tCc/tAc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225896	2225896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018567-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	55	538	0	ENST00000326181.6:c.1688A>G	p.Tyr563Cys	p.Y563C	ENST00000326181	NM_032271.2	563	tAc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019002-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	43	529	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59861733	59861733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019002-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	31	367	0	ENST00000259008.2:c.1526G>A	p.Gly509Asp	p.G509D	ENST00000259008	NM_032043.2	509	gGt/gAt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053541	37053541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019002-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	42	465	0	ENST00000231790.2:c.628G>A	p.Ala210Thr	p.A210T	ENST00000231790	NM_000249.3	210	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	185	544	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	36	332	0	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68844155	68844155	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	170	525	0	ENST00000261769.5:c.743T>A	p.Ile248Asn	p.I248N	ENST00000261769	NM_004360.3	248	aTt/aAt																																																																														
CBFB	865	MSKCC	GRCh37	16	67100597	67100597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	40	364	0	ENST00000412916.2:c.295G>T	p.Ala99Ser	p.A99S	ENST00000412916		99	Gct/Tct																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469941	25469941	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	73	521	0	ENST00000264709.3:c.1101A>C	p.Lys367Asn	p.K367N	ENST00000264709	NM_175629.2	367	aaA/aaC																																																																														
MED12	9968	MSKCC	GRCh37	X	70350018	70350062	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AGGATGGGGAAAACCCCCAGCGGCAGCGCATAAAGCGCATTCTCC	AGGATGGGGAAAACCCCCAGCGGCAGCGCATAAAGCGCATTCTCC	-			P-0027460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	70	512	0	ENST00000374080.3:c.4004_4047+1del		p.EDGENPQRQRIKRILQdel	ENST00000374080		1334	gAGGATGGGGAAAACCCCCAGCGGCAGCGCATAAAGCGCATTCTCCag/gag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	110	370	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	222	805	1	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48586262	48586262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	111	382	0	ENST00000342988.3:c.931C>T	p.Gln311Ter	p.Q311*	ENST00000342988	NM_005359.5	311	Cag/Tag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73351564	73351564	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	22	203	1	ENST00000377767.4:c.648A>C	p.Glu216Asp	p.E216D	ENST00000377767	NM_014953.3	216	gaA/gaC																																																																														
CASP8	841	MSKCC	GRCh37	2	202149998	202149998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	209	602	0	ENST00000358485.4:c.1439A>T	p.Tyr480Phe	p.Y480F	ENST00000358485	NM_001080125.1	480	tAc/tTc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191455	185191456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	216	759	0	ENST00000265026.3:c.2337dup	p.Glu780Ter	p.E780*	ENST00000265026	NM_004721.4	779	aat/aaTt																																																																														
MSH3	4437	MSKCC	GRCh37	5	80149966	80149966	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	105	346	0	ENST00000265081.6:c.2831A>G	p.Asn944Ser	p.N944S	ENST00000265081	NM_002439.4	944	aAt/aGt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911533	131911533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	78	419	0	ENST00000265335.6:c.278T>C	p.Leu93Pro	p.L93P	ENST00000265335		93	cTt/cCt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860257	151860257	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0029566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	146	463	0	ENST00000262189.6:c.10405delinsTT	p.Leu3469PhefsTer26	p.L3469Ffs*26	ENST00000262189	NM_170606.2	3469	Ctt/TTtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	169	608	1	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573524	48573524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	38	227	0	ENST00000342988.3:c.112del	p.Arg38GlufsTer7	p.R38Efs*7	ENST00000342988	NM_005359.5	36	gcA/gc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211843	36211843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	113	1006	0	ENST00000222270.7:c.1594G>T	p.Val532Leu	p.V532L	ENST00000222270	NM_014727.1	532	Gtg/Ttg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55270306	55270306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	80	818	0	ENST00000275493.2:c.3259C>A	p.Leu1087Ile	p.L1087I	ENST00000275493	NM_005228.3	1087	Ctc/Atc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0035785-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	170	528	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035785-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	204	674	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625159	69625159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035785-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			868	120	707	1	ENST00000334134.2:c.634C>T	p.Arg212Trp	p.R212W	ENST00000334134	NM_005247.2	212	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492794	56492794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035785-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	180	557	0	ENST00000407977.2:c.145A>G	p.Arg49Gly	p.R49G	ENST00000407977		49	Aga/Gga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974744	21974770	+	inframe_deletion	In_Frame_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCG	ACCTCCTCTACCCGACCCCGGGCCGCG	-			P-0035785-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	84	325	0	ENST00000304494.5:c.57_83del	p.Ala20_Val28del	p.A20_V28del	ENST00000304494	NM_000077.4	19	gcCGCGGCCCGGGGTCGGGTAGAGGAGGTg/gcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974744	21974770	+	inframe_deletion	In_Frame_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCG	ACCTCCTCTACCCGACCCCGGGCCGCG	-			P-0035785-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	84	325	0	ENST00000304494.5:c.57_83del	p.Ala20_Val28del	p.A20_V28del	ENST00000304494	NM_000077.4	19	gcCGCGGCCCGGGGTCGGGTAGAGGAGGTg/gcg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262592	16262592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			338	269	528	0	ENST00000375759.3:c.9857C>A	p.Pro3286His	p.P3286H	ENST00000375759	NM_015001.2	3286	cCt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023748	27023748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			150	143	389	0	ENST00000324856.7:c.854G>A	p.Gly285Glu	p.G285E	ENST00000324856	NM_006015.4	285	gGa/gAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101423	27101423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			260	230	517	1	ENST00000324856.7:c.4705C>T	p.Pro1569Ser	p.P1569S	ENST00000324856	NM_006015.4	1569	Cca/Tca																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935268	36935268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			389	311	752	1	ENST00000361632.4:c.1459G>A	p.Gly487Arg	p.G487R	ENST00000361632		487	Ggg/Agg																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166271	118166271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			250	219	389	0	ENST00000369448.3:c.781G>A	p.Glu261Lys	p.E261K	ENST00000369448	NM_017709.3	261	Gaa/Aaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849128	156849128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			903	401	830	0	ENST00000524377.1:c.2020G>A	p.Asp674Asn	p.D674N	ENST00000524377	NM_002529.3	674	Gat/Aat																																																																														
SUFU	51684	MSKCC	GRCh37	10	104377181	104377182	+	missense_variant	Missense_Mutation	DNP	TA	TA	CT			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			497	374	801	0	ENST00000369902.3:c.1292_1293delinsCT	p.Leu431Ser	p.L431S	ENST00000369902	NM_016169.3	431	tTA/tCT																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123256135	123256135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141929882		P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			744	322	655	0	ENST00000358487.5:c.1774C>T	p.Arg592Cys	p.R592C	ENST00000358487	NM_000141.4	592	Cgt/Tgt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123324081	123324081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			597	254	495	1	ENST00000358487.5:c.389C>T	p.Ser130Phe	p.S130F	ENST00000358487	NM_000141.4	130	tCc/tTc																																																																														
ATM	472	MSKCC	GRCh37	11	108141997	108141997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			35	281	431	0	ENST00000278616.4:c.2941C>T	p.Arg981Cys	p.R981C	ENST00000278616	NM_000051.3	981	Cgt/Tgt																																																																														
CBL	867	MSKCC	GRCh37	11	119103398	119103398	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			40	206	377	0	ENST00000264033.4:c.436C>T	p.Gln146Ter	p.Q146*	ENST00000264033	NM_005188.3	146	Cag/Tag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	417041	417041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			246	198	400	0	ENST00000399788.2:c.3509C>T	p.Ala1170Val	p.A1170V	ENST00000399788	NM_001042603.1	1170	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431735	49431735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			297	272	798	1	ENST00000301067.7:c.9404C>T	p.Thr3135Ile	p.T3135I	ENST00000301067	NM_003482.3	3135	aCc/aTc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112892368	112892368	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			269	220	430	0	ENST00000351677.2:c.526G>A	p.Glu176Lys	p.E176K	ENST00000351677	NM_002834.3	176	Gaa/Aaa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112910803	112910803	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			280	261	431	0	ENST00000351677.2:c.812A>T	p.Gln271Leu	p.Q271L	ENST00000351677	NM_002834.3	271	cAa/cTa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601256	28601256	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			284	253	530	0	ENST00000241453.7:c.2176T>C	p.Tyr726His	p.Y726H	ENST00000241453	NM_004119.2	726	Tac/Cac																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964022	28964022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			248	194	445	0	ENST00000282397.4:c.1880C>T	p.Ser627Phe	p.S627F	ENST00000282397	NM_002019.4	627	tCc/tTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005419	29005419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55687105		P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			283	257	345	0	ENST00000282397.4:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000282397	NM_002019.4	281	cGa/cAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012452	29012452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			331	297	552	0	ENST00000282397.4:c.419G>A	p.Ser140Asn	p.S140N	ENST00000282397	NM_002019.4	140	aGt/aAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944632	32944632	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			434	334	572	0	ENST00000380152.3:c.8425T>C	p.Phe2809Leu	p.F2809L	ENST00000380152		2809	Ttc/Ctc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336134	73336134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			162	119	325	1	ENST00000377767.4:c.2269G>A	p.Gly757Arg	p.G757R	ENST00000377767	NM_014953.3	757	Gga/Aga																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569948	95569948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			304	251	435	0	ENST00000343455.3:c.3785C>T	p.Pro1262Leu	p.P1262L	ENST00000343455	NM_177438.2	1262	cCt/cTt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041734	42041734	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			267	269	450	0	ENST00000219905.7:c.5929C>T	p.Gln1977Ter	p.Q1977*	ENST00000219905	NM_001164273.1	1977	Cag/Tag																																																																														
MGA	23269	MSKCC	GRCh37	15	42052602	42052602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			399	333	445	0	ENST00000219905.7:c.7273C>T	p.Arg2425Cys	p.R2425C	ENST00000219905	NM_001164273.1	2425	Cgc/Tgc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713311	43713311	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			574	468	858	0	ENST00000382044.4:c.4162C>G	p.Leu1388Val	p.L1388V	ENST00000382044	NM_001141980.1	1388	Ctt/Gtt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472652	88472652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			233	211	402	0	ENST00000360948.2:c.1903G>A	p.Asp635Asn	p.D635N	ENST00000360948	NM_001012338.2	635	Gat/Aat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476280	88476280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			359	301	624	0	ENST00000360948.2:c.1852G>A	p.Glu618Lys	p.E618K	ENST00000360948	NM_001012338.2	618	Gaa/Aaa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396431	396431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			421	349	745	0	ENST00000262320.3:c.595C>T	p.Pro199Ser	p.P199S	ENST00000262320	NM_003502.3	199	Ccc/Tcc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632744	23632744	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			356	242	561	0	ENST00000261584.4:c.3052G>T	p.Glu1018Ter	p.E1018*	ENST00000261584	NM_024675.3	1018	Gag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671678	67671679	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			350	275	578	0	ENST00000264010.4:c.2087_2088delinsTT	p.Pro696Leu	p.P696L	ENST00000264010	NM_006565.3	696	cCC/cTT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346081	89346081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			45	38	144	0	ENST00000301030.4:c.6869C>T	p.Pro2290Leu	p.P2290L	ENST00000301030	NM_001256183.1	2290	cCc/cTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350869	89350869	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			510	448	842	0	ENST00000301030.4:c.2081T>G	p.Phe694Cys	p.F694C	ENST00000301030	NM_001256183.1	694	tTt/tGt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11958242	11958242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			252	250	382	0	ENST00000353533.5:c.152C>T	p.Pro51Leu	p.P51L	ENST00000353533	NM_003010.3	51	cCa/cTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29554601	29554602	+	missense_variant	Missense_Mutation	DNP	AA	AA	GT			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			277	166	282	0	ENST00000358273.4:c.2386_2387delinsGT	p.Lys796Val	p.K796V	ENST00000358273	NM_001042492.2	796	AAa/GTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29576001	29576001	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			281	251	314	0	ENST00000358273.4:c.3975-1G>A		p.X1325_splice	ENST00000358273	NM_001042492.2	1325																																																																															
NF1	4763	MSKCC	GRCh37	17	29653151	29653151	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			269	183	388	0	ENST00000358273.4:c.5149G>T	p.Glu1717Ter	p.E1717*	ENST00000358273	NM_001042492.2	1717	Gag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864574	37864574	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			181	233	454	0	ENST00000269571.5:c.226G>A	p.Asp76Asn	p.D76N	ENST00000269571		76	Gat/Aat																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59857681	59857681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			358	284	429	0	ENST00000259008.2:c.1876G>A	p.Glu626Lys	p.E626K	ENST00000259008	NM_032043.2	626	Gaa/Aaa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222899	36222899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			307	292	854	0	ENST00000222270.7:c.5528C>T	p.Pro1843Leu	p.P1843L	ENST00000222270	NM_014727.1	1843	cCt/cTt																																																																														
CIC	23152	MSKCC	GRCh37	19	42792107	42792107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			308	217	606	1	ENST00000575354.2:c.911G>A	p.Gly304Asp	p.G304D	ENST00000575354	NM_015125.3	304	gGc/gAc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965017	25965017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			318	240	512	1	ENST00000435504.4:c.4189C>T	p.Pro1397Ser	p.P1397S	ENST00000435504		1397	Cct/Tct																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99185035	99185035	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			354	307	424	1	ENST00000074304.5:c.2437T>C	p.Phe813Leu	p.F813L	ENST00000074304	NM_001134224.1	813	Ttt/Ctt																																																																														
PAK7	0	MSKCC	GRCh37	20	9538275	9538275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			440	321	543	0	ENST00000353224.5:c.1723C>T	p.Leu575Phe	p.L575F	ENST00000353224	NM_177990.2	575	Ctc/Ttc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31015959	31015959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			308	217	457	0	ENST00000375687.4:c.281C>T	p.Pro94Leu	p.P94L	ENST00000375687	NM_015338.5	94	cCa/cTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739115	40739115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			270	209	627	1	ENST00000373198.4:c.3169G>A	p.Glu1057Lys	p.E1057K	ENST00000373198	NM_133170.3	1057	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827900	40827900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			383	316	529	0	ENST00000373198.4:c.2528C>T	p.Ser843Phe	p.S843F	ENST00000373198	NM_133170.3	843	tCt/tTt																																																																														
ERG	2078	MSKCC	GRCh37	21	39817438	39817438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			375	284	563	0	ENST00000288319.7:c.125G>A	p.Gly42Glu	p.G42E	ENST00000288319	NM_182918.3	42	gGa/gAa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42852517	42852517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			357	270	714	0	ENST00000398585.3:c.569G>A	p.Gly190Glu	p.G190E	ENST00000398585	NM_001135099.1	190	gGa/gAa																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655440	45655440	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			312	295	635	0	ENST00000407780.3:c.412T>G	p.Phe138Val	p.F138V	ENST00000407780	NM_001283052.1	138	Ttc/Gtc																																																																														
NF2	4771	MSKCC	GRCh37	22	30035181	30035181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			407	310	544	0	ENST00000338641.4:c.343C>T	p.Gln115Ter	p.Q115*	ENST00000338641	NM_000268.3	115	Caa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259116	89259117	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			513	228	412	0	ENST00000336596.2:c.260_261delinsAT	p.Val87Asp	p.V87D	ENST00000336596	NM_005233.5	87	gTC/gAT																																																																														
TP63	8626	MSKCC	GRCh37	3	189456447	189456447	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			46	538	375	0	ENST00000264731.3:c.208C>T	p.Gln70Ter	p.Q70*	ENST00000264731	NM_003722.4	70	Cag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133586	55133586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			332	271	552	0	ENST00000257290.5:c.890G>A	p.Arg297Lys	p.R297K	ENST00000257290	NM_006206.4	297	aGg/aAg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156489	55156489	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			275	219	430	2	ENST00000257290.5:c.2890A>G	p.Lys964Glu	p.K964E	ENST00000257290	NM_006206.4	964	Aaa/Gaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157485	106157485	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs747398674		P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			201	174	363	0	ENST00000380013.4:c.2386G>A	p.Glu796Lys	p.E796K	ENST00000380013	NM_001127208.2	796	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541439	187541439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			314	212	455	0	ENST00000441802.2:c.6301C>T	p.Arg2101Cys	p.R2101C	ENST00000441802	NM_005245.3	2101	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295230	1295230	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			196	269	372	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			216	276	375	0				ENST00000310581	NM_198253.2																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149435618	149435618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			482	354	615	0	ENST00000286301.3:c.2525G>A	p.Gly842Asp	p.G842D	ENST00000286301	NM_005211.3	842	gGc/gAc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500491	149500491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			436	358	672	0	ENST00000261799.4:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000261799	NM_002609.3	849	cGa/cAa																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250700	26250700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			290	408	540	0	ENST00000446824.2:c.134G>A	p.Gly45Asp	p.G45D	ENST00000446824	NM_021018.2	45	gGt/gAt																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797788	32797788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			594	282	582	1	ENST00000374899.4:c.1714G>A	p.Glu572Lys	p.E572K	ENST00000374899	NM_018833.2	572	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956552	93956552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			204	177	361	0	ENST00000369303.4:c.2684G>A	p.Arg895Gln	p.R895Q	ENST00000369303	NM_004440.3	895	cGa/cAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068097	94068097	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			260	215	383	0	ENST00000369303.4:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000369303	NM_004440.3	289	Caa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725567	117725567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			358	277	470	0	ENST00000368508.3:c.314C>T	p.Pro105Leu	p.P105L	ENST00000368508	NM_002944.2	105	cCc/cTc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6037030	6037030	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			430	453	404	0	ENST00000265849.7:c.730C>T	p.Gln244Ter	p.Q244*	ENST00000265849	NM_000535.5	244	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55220344	55220344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			590	522	590	1	ENST00000275493.2:c.734A>G	p.Glu245Gly	p.E245G	ENST00000275493	NM_005228.3	245	gAg/gGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55232974	55232974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			430	376	360	0	ENST00000275493.2:c.1724G>A	p.Gly575Glu	p.G575E	ENST00000275493	NM_005228.3	575	gGa/gAa																																																																														
HGF	3082	MSKCC	GRCh37	7	81359032	81359032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			782	1217	511	0	ENST00000222390.5:c.929G>A	p.Gly310Glu	p.G310E	ENST00000222390	NM_000601.4	310	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945093	151945093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			473	59	514	0	ENST00000262189.6:c.2426G>A	p.Gly809Glu	p.G809E	ENST00000262189	NM_170606.2	809	gGa/gAa																																																																														
LYN	4067	MSKCC	GRCh37	8	56879289	56879289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			386	306	646	1	ENST00000519728.1:c.806G>A	p.Ser269Asn	p.S269N	ENST00000519728	NM_002350.3	269	aGt/aAt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069575	69069575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			280	281	458	0	ENST00000288368.4:c.4250G>A	p.Gly1417Glu	p.G1417E	ENST00000288368	NM_024870.2	1417	gGa/gAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5055750	5055750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			43	337	358	1	ENST00000381652.3:c.1018C>T	p.Arg340Ter	p.R340*	ENST00000381652	NM_004972.3	340	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524946	8524946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			27	405	398	0	ENST00000356435.5:c.658C>T	p.Pro220Ser	p.P220S	ENST00000356435		220	Cct/Tct																																																																														
TEK	7010	MSKCC	GRCh37	9	27228284	27228284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			31	509	574	0	ENST00000380036.4:c.3281G>A	p.Arg1094Lys	p.R1094K	ENST00000380036	NM_000459.3	1094	aGa/aAa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317533	1317533	+	downstream_gene_variant	3'Flank	SNP	C	C	T	rs199794164		P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			315	187	614	1				ENST00000381566																																																																																	
BCOR	54880	MSKCC	GRCh37	X	39913538	39913538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			14	266	300	0	ENST00000378444.4:c.4790C>T	p.Thr1597Ile	p.T1597I	ENST00000378444	NM_001123385.1	1597	aCt/aTt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223368	53223368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			23	438	378	0	ENST00000375401.3:c.3991C>T	p.Pro1331Ser	p.P1331S	ENST00000375401	NM_004187.3	1331	Cct/Tct																																																																														
ATRX	546	MSKCC	GRCh37	X	76938304	76938304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036733-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			41	318	321	0	ENST00000373344.5:c.2444C>T	p.Ser815Phe	p.S815F	ENST00000373344	NM_000489.3	815	tCt/tTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0037164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2323	85	399	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			713	228	637	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	152	539	1	ENST00000371953.3:c.70G>C	p.Asp24His	p.D24H	ENST00000371953	NM_000314.4	24	Gac/Cac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28936392		P-0037164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	69	322	0	ENST00000342988.3:c.1477G>C	p.Asp493His	p.D493H	ENST00000342988	NM_005359.5	493	Gat/Cat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39935769	39935769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			743	55	448	0	ENST00000378444.4:c.103G>T	p.Asp35Tyr	p.D35Y	ENST00000378444	NM_001123385.1	35	Gat/Tat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244040	46244040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			670	60	455	0	ENST00000334344.6:c.2134G>A	p.Glu712Lys	p.E712K	ENST00000334344	NM_152641.2	712	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042203-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	84	212	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435868	110435868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042203-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	85	340	0	ENST00000375856.3:c.2533C>T	p.Pro845Ser	p.P845S	ENST00000375856	NM_003749.2	845	Cca/Tca																																																																														
STK11	6794	MSKCC	GRCh37	19	1221341	1221341	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0042203-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	60	357	0	ENST00000326873.7:c.862+2T>G		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0042780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	37	50	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711891	89711891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	19	34	0	ENST00000371953.3:c.509G>T	p.Ser170Ile	p.S170I	ENST00000371953	NM_000314.4	170	aGt/aTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821643	72821645	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0043182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	11	118	1	ENST00000268489.5:c.10530_10532del	p.Gly3512del	p.G3512del	ENST00000268489	NM_006885.3	3510	ggCGGt/ggt																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	431	967	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413049	139413049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	303	699	0	ENST00000277541.6:c.1093C>T	p.Arg365Cys	p.R365C	ENST00000277541	NM_017617.3	365	Cgc/Tgc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035204	6035207	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	519	638	0	ENST00000265849.7:c.861_864delACAG	p.Arg287SerfsTer19	p.R287Sfs*19	ENST00000265849	NM_000535.5	287	agACAG/ag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120506303	120506303	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	213	619	0	ENST00000256646.2:c.1809C>G	p.Ile603Met	p.I603M	ENST00000256646	NM_024408.3	603	atC/atG																																																																														
RB1	5925	MSKCC	GRCh37	13	48951082	48951082	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	156	368	0	ENST00000267163.4:c.1244T>A	p.Ile415Lys	p.I415K	ENST00000267163	NM_000321.2	415	aTa/aAa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699332	47699332	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	343	556	0	ENST00000347630.2:c.176C>G	p.Ser59Ter	p.S59*	ENST00000347630	NM_001007230.1	59	tCa/tGa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464507	25464507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	293	865	0	ENST00000264709.3:c.2006C>G	p.Ser669Cys	p.S669C	ENST00000264709	NM_175629.2	669	tCc/tGc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610583	52610583	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	243	570	0	ENST00000394830.3:c.3590A>C	p.Glu1197Ala	p.E1197A	ENST00000394830	NM_018313.4	1197	gAa/gCa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521651	89521651	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	230	665	0	ENST00000336596.2:c.2728A>G	p.Ile910Val	p.I910V	ENST00000336596	NM_005233.5	910	Atc/Gtc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593323	67593323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	61	436	0	ENST00000274335.5:c.2069C>T	p.Ser690Phe	p.S690F	ENST00000274335		690	tCt/tTt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469562	25469562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	171	889	0	ENST00000264709.3:c.1206G>C	p.Gln402His	p.Q402H	ENST00000264709	NM_175629.2	402	caG/caC																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434656	99434656	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	130	834	0	ENST00000268035.6:c.743G>C	p.Cys248Ser	p.C248S	ENST00000268035	NM_000875.3	248	tGt/tCt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845571	72845571	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	96	891	0	ENST00000268489.5:c.3769T>G	p.Cys1257Gly	p.C1257G	ENST00000268489	NM_006885.3	1257	Tgc/Ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578506	7578507	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0043319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	168	1052	0	ENST00000269305.4:c.421_423dup	p.Cys141dup	p.C141dup	ENST00000269305	NM_001126112.2	141	-/TGC																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940757	49940757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	86	766	3	ENST00000296474.3:c.286G>A	p.Ala96Thr	p.A96T	ENST00000296474	NM_002447.2	96	Gct/Act																																																																														
ETV6	2120	MSKCC	GRCh37	12	12038879	12038879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	58	278	0	ENST00000396373.4:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000396373	NM_001987.4	391	tAt/tGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832212	72832212	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	445	0	ENST00000268489.5:c.4369G>T	p.Glu1457Ter	p.E1457*	ENST00000268489	NM_006885.3	1457	Gag/Tag																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42843742	42843827	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGAGGCTTCTGCAGCTTCATCAGCGCAATGTCATTGTTCTTGGTCTTGGAGTCATAATTTGGATGAGAAATCACTTTTTCTACT	TCAGAGGCTTCTGCAGCTTCATCAGCGCAATGTCATTGTTCTTGGTCTTGGAGTCATAATTTGGATGAGAAATCACTTTTTCTACT	-			P-0043416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	92	467	0	ENST00000398585.3:c.1092_1177del	p.Gln364HisfsTer51	p.Q364Hfs*51	ENST00000398585	NM_001135099.1	364	caAGTAGAAAAAGTGATTTCTCATCCAAATTATGACTCCAAGACCAAGAACAATGACATTGCGCTGATGAAGCTGCAGAAGCCTCTGAct/cact																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156742	20156742	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0043422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	44	152	0	ENST00000379607.5:c.17-2A>G		p.X6_splice	ENST00000379607	NM_001412.3	6																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120146	70120146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	53	270	0	ENST00000245479.2:c.1148C>T	p.Thr383Ile	p.T383I	ENST00000245479	NM_000346.3	383	aCc/aTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0043478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	60	632	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
KIT	3815	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	181	359	0	ENST00000288135.5:c.1669T>A	p.Trp557Arg	p.W557R	ENST00000288135	NM_000222.2	557	Tgg/Agg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453395	40453395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	265	713	0	ENST00000345506.4:c.1092G>T	p.Met364Ile	p.M364I	ENST00000345506	NM_003152.3	364	atG/atT																																																																														
TET2	54790	MSKCC	GRCh37	4	106155385	106155385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	61	478	0	ENST00000380013.4:c.286C>T	p.Arg96Cys	p.R96C	ENST00000380013	NM_001127208.2	96	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	58	186	0				ENST00000310581	NM_198253.2																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44938390	44938390	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0043685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	76	99	0	ENST00000377967.4:c.2939-1G>A		p.X980_splice	ENST00000377967	NM_021140.2	980																																																																															
IRF4	3662	MSKCC	GRCh37	6	393303	393303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	39	334	1	ENST00000380956.4:c.151C>T	p.Arg51Cys	p.R51C	ENST00000380956	NM_001195286.1	51	Cgc/Tgc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40367042	40367042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	32	534	0	ENST00000397332.2:c.155C>T	p.Ser52Phe	p.S52F	ENST00000397332	NM_001033082.2	52	tCc/tTc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982992	201982992	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	317	513	0	ENST00000359651.3:c.841G>C	p.Asp281His	p.D281H	ENST00000359651		281	Gac/Cac																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430740	181430740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	122	412	0	ENST00000325404.1:c.592C>T	p.His198Tyr	p.H198Y	ENST00000325404	NM_003106.3	198	Cac/Tac																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983008	201983008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	76	876	0	ENST00000359651.3:c.857C>A	p.Pro286Gln	p.P286Q	ENST00000359651		286	cCg/cAg																																																																														
EED	8726	MSKCC	GRCh37	11	85975286	85975286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	63	275	0	ENST00000263360.6:c.707G>A	p.Arg236Lys	p.R236K	ENST00000263360	NM_003797.3	236	aGa/aAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118369209	118369209	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	77	311	0	ENST00000534358.1:c.5927A>G	p.Tyr1976Cys	p.Y1976C	ENST00000534358	NM_005933.3	1976	tAt/tGt																																																																														
ETV6	2120	MSKCC	GRCh37	12	12006496	12006496	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	43	611	0	ENST00000396373.4:c.463+1G>T		p.X155_splice	ENST00000396373	NM_001987.4	155																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426664	49426664	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	73	443	0	ENST00000301067.7:c.11824C>G	p.Gln3942Glu	p.Q3942E	ENST00000301067	NM_003482.3	3942	Caa/Gaa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56490937	56490937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	66	631	0	ENST00000267101.3:c.2383C>A	p.Leu795Met	p.L795M	ENST00000267101	NM_001982.3	795	Ctg/Atg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26974688	26974688	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	62	375	0	ENST00000381527.3:c.1031+1G>A		p.X344_splice	ENST00000381527	NM_001260.1	344																																																																															
BRCA2	675	MSKCC	GRCh37	13	32905069	32905069	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	18	164	0	ENST00000380152.3:c.695A>G	p.Tyr232Cys	p.Y232C	ENST00000380152		232	tAt/tGt																																																																														
RB1	5925	MSKCC	GRCh37	13	48919281	48919281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	29	99	0	ENST00000267163.4:c.446C>G	p.Ser149Ter	p.S149*	ENST00000267163	NM_000321.2	149	tCa/tGa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436222	110436222	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	26	518	0	ENST00000375856.3:c.2179T>A	p.Tyr727Asn	p.Y727N	ENST00000375856	NM_003749.2	727	Tac/Aac																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643303	38643303	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	43	375	0	ENST00000299084.4:c.773A>G	p.Tyr258Cys	p.Y258C	ENST00000299084	NM_152594.2	258	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	158	667	1	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16046984	16046984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	33	402	0	ENST00000268712.3:c.1109C>T	p.Ser370Leu	p.S370L	ENST00000268712	NM_006311.3	370	tCa/tTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29557918	29557918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	10	94	0	ENST00000358273.4:c.3172G>C	p.Asp1058His	p.D1058H	ENST00000358273	NM_001042492.2	1058	Gat/Cat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	125	671	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245896	41245896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	102	470	0	ENST00000357654.3:c.1652G>A	p.Ser551Asn	p.S551N	ENST00000357654	NM_007294.3	551	aGt/aAt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872197	45872197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	52	666	0	ENST00000391945.4:c.237G>C	p.Glu79Asp	p.E79D	ENST00000391945	NM_000400.3	79	gaG/gaC																																																																														
BBC3	27113	MSKCC	GRCh37	19	47731659	47731660	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	56	242	0	ENST00000449228.1:c.131_132dup	p.Pro45SerfsTer185	p.P45Sfs*185	ENST00000449228	NM_001127240.2	44	-/TC																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719380	190719380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	31	174	0	ENST00000441310.2:c.1382C>T	p.Ser461Phe	p.S461F	ENST00000441310	NM_000534.4	461	tCc/tTc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719828	190719829	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	38	144	0	ENST00000441310.2:c.1831dup	p.Thr611AsnfsTer4	p.T611Nfs*4	ENST00000441310	NM_000534.4	610	-/A																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521422	187521453	+	frameshift_variant	Frame_Shift_Del	DEL	CCACTGCCCATCATTGACCTGAATGCTCTGAA	CCACTGCCCATCATTGACCTGAATGCTCTGAA	-			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	43	456	0	ENST00000441802.2:c.11702_11733del	p.Val3901AlafsTer37	p.V3901Afs*37	ENST00000441802	NM_005245.3	3901	gTTCAGAGCATTCAGGTCAATGATGGGCAGTGG/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	68	382	2				ENST00000310581	NM_198253.2																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38945113	38945114	+	missense_variant	Missense_Mutation	DNP	TC	TC	AG			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	52	312	0	ENST00000357387.3:c.4690_4691delinsCT	p.Glu1564Leu	p.E1564L	ENST00000357387	NM_152756.3	1564	GAa/CTa																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045711	26045711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	30	237	0	ENST00000540144.1:c.73G>A	p.Ala25Thr	p.A25T	ENST00000540144	NM_003531.2	25	Gca/Aca																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672048	30672048	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	58	784	0	ENST00000376406.3:c.4912A>C	p.Thr1638Pro	p.T1638P	ENST00000376406	NM_014641.2	1638	Act/Cct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517346	157517346	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	56	498	0	ENST00000346085.5:c.3910A>C	p.Ser1304Arg	p.S1304R	ENST00000346085	NM_020732.3	1304	Agc/Cgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151902241	151902241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	56	394	0	ENST00000262189.6:c.3911G>A	p.Arg1304Lys	p.R1304K	ENST00000262189	NM_170606.2	1304	aGa/aAa																																																																														
SYK	6850	MSKCC	GRCh37	9	93606412	93606412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	77	796	1	ENST00000375746.1:c.232G>A	p.Gly78Ser	p.G78S	ENST00000375746	NM_001174167.1	78	Ggt/Agt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930262	39930262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	59	340	1	ENST00000378444.4:c.3202G>A	p.Glu1068Lys	p.E1068K	ENST00000378444	NM_001123385.1	1068	Gag/Aag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223533	53223533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	60	323	0	ENST00000375401.3:c.3826G>A	p.Glu1276Lys	p.E1276K	ENST00000375401	NM_004187.3	1276	Gag/Aag																																																																														
MED12	9968	MSKCC	GRCh37	X	70347223	70347223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	119	284	0	ENST00000374080.3:c.2887G>A	p.Asp963Asn	p.D963N	ENST00000374080		963	Gat/Aat																																																																														
STK11	6794	MSKCC	GRCh37	19	1220502	1220502	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0043700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	192	679	0	ENST00000326873.7:c.595G>T	p.Glu199Ter	p.E199*	ENST00000326873	NM_000455.4	199	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440573	49440573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0043700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	144	646	0	ENST00000301067.7:c.4237A>G	p.Ile1413Val	p.I1413V	ENST00000301067	NM_003482.3	1413	Atc/Gtc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95577669	95577669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	109	289	0	ENST00000343455.3:c.2241G>C	p.Gln747His	p.Q747H	ENST00000343455	NM_177438.2	747	caG/caC																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610577	10610592	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGCGTCACCTCCGC	AGGGCGTCACCTCCGC	-			P-0043700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	181	670	0	ENST00000171111.5:c.118_133del	p.Ala40ProfsTer23	p.A40Pfs*23	ENST00000171111	NM_203500.1	40	GCGGAGGTGACGCCCTcc/cc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521763	89521763	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs192800580		P-0043700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	62	220	0	ENST00000336596.2:c.2840C>A	p.Ser947Tyr	p.S947Y	ENST00000336596	NM_005233.5	947	tCc/tAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995555	68995555	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0043700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	73	406	0	ENST00000288368.4:c.1959T>G	p.Asp653Glu	p.D653E	ENST00000288368	NM_024870.2	653	gaT/gaG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	79	346	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0043701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	111	693	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
HGF	3082	MSKCC	GRCh37	7	81350086	81350086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	26	267	0	ENST00000222390.5:c.1246G>T	p.Asp416Tyr	p.D416Y	ENST00000222390	NM_000601.4	416	Gac/Tac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040722	47040723	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	40	389	0	ENST00000329236.7:c.1126dup	p.Leu376ProfsTer64	p.L376Pfs*64	ENST00000329236	NM_001204466.1	375	tcc/tCcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	46	507	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612900	228612900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	140	510	2	ENST00000366696.1:c.127C>T	p.Arg43Trp	p.R43W	ENST00000366696	NM_003493.2	43	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	118	690	3	ENST00000269305.4:c.454C>A	p.Pro152Thr	p.P152T	ENST00000269305	NM_001126112.2	152	Ccg/Acg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148516774	148516774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	26	221	0	ENST00000320356.2:c.913C>T	p.His305Tyr	p.H305Y	ENST00000320356	NM_004456.4	305	Cat/Tat																																																																														
POLE	5426	MSKCC	GRCh37	12	133248799	133248799	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	59	401	0	ENST00000320574.5:c.1794+2T>C		p.X598_splice	ENST00000320574	NM_006231.2	598																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600396	10600396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	108	694	0	ENST00000171111.5:c.1459G>C	p.Ala487Pro	p.A487P	ENST00000171111	NM_203500.1	487	Gct/Cct																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144095	11144095	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	104	663	0	ENST00000344626.4:c.3676C>T	p.Gln1226Ter	p.Q1226*	ENST00000344626	NM_003072.3	1226	Cag/Tag																																																																														
CDK6	1021	MSKCC	GRCh37	7	92404108	92404108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	42	319	0	ENST00000265734.4:c.271G>A	p.Glu91Lys	p.E91K	ENST00000265734	NM_001259.6	91	Gaa/Aaa																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128206818	128206818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	57	330	0	ENST00000265960.3:c.1405G>C	p.Glu469Gln	p.E469Q	ENST00000265960	NM_001006617.1	469	Gaa/Caa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864632	68864632	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0043704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	16	113	0	ENST00000288368.4:c.3G>A	p.Met1?	p.M1?	ENST00000288368	NM_024870.2	1	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0043709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	208	589	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	48939033	48939033	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0043709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	71	171	1	ENST00000267163.4:c.869del	p.Asn290MetfsTer11	p.N290Mfs*11	ENST00000267163	NM_000321.2	289	Aaa/aa																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431650	6431650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	74	497	0	ENST00000356142.4:c.203G>A	p.Arg68His	p.R68H	ENST00000356142	NM_018890.3	68	cGc/cAc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061219	38061243	+	frameshift_variant	Frame_Shift_Del	DEL	CCGTTCTCGAACATGTTGCCGGAGT	CCGTTCTCGAACATGTTGCCGGAGT	-			P-0043709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	461	466	0	ENST00000250448.2:c.746_770del	p.Asp249AlafsTer64	p.D249Afs*64	ENST00000250448	NM_004496.3	249	gACTCCGGCAACATGTTCGAGAACGGc/gc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570263	95570263	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	99	288	0	ENST00000343455.3:c.3470T>G	p.Leu1157Arg	p.L1157R	ENST00000343455	NM_177438.2	1157	cTc/cGc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128015194	128015194	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	55	483	0	ENST00000285398.2:c.2327T>C	p.Leu776Pro	p.L776P	ENST00000285398	NM_000122.1	776	cTc/cCc																																																																														
CDK6	1021	MSKCC	GRCh37	7	92300744	92300744	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	37	219	0	ENST00000265734.4:c.643A>G	p.Arg215Gly	p.R215G	ENST00000265734	NM_001259.6	215	Aga/Gga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342862	87342862	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	112	362	0	ENST00000277120.3:c.1148del	p.Gly383GlufsTer13	p.G383Efs*13	ENST00000277120		383	Gga/ga																																																																														
ABL1	25	MSKCC	GRCh37	9	133750414	133750414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	256	498	0	ENST00000318560.5:c.1245G>C	p.Lys415Asn	p.K415N	ENST00000318560	NM_005157.4	415	aaG/aaC																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	16	285	1	ENST00000347630.2:c.392G>T	p.Trp131Leu	p.W131L	ENST00000347630	NM_001007230.1	131	tGg/tTg																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125507398	125507398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	18	196	0	ENST00000428830.2:c.773A>G	p.Asp258Gly	p.D258G	ENST00000428830	NM_001114121.2	258	gAc/gGc																																																																														
VHL	7428	MSKCC	GRCh37	3	10183872	10183872	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0043724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	112	427	0	ENST00000256474.2:c.340+1G>A		p.X114_splice	ENST00000256474	NM_000551.3	114																																																																															
SESN2	83667	MSKCC	GRCh37	1	28605657	28605657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	36	498	0	ENST00000253063.3:c.1261C>G	p.Leu421Val	p.L421V	ENST00000253063	NM_031459.4	421	Ctc/Gtc																																																																														
ATRX	546	MSKCC	GRCh37	X	76874302	76874302	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	75	504	0	ENST00000373344.5:c.5420T>C	p.Leu1807Pro	p.L1807P	ENST00000373344	NM_000489.3	1807	cTc/cCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0043823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	185	503	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290070	15290070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	375	618	0	ENST00000263388.2:c.3484G>A	p.Asp1162Asn	p.D1162N	ENST00000263388	NM_000435.2	1162	Gat/Aat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932488	39932488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	91	649	0	ENST00000378444.4:c.2111A>T	p.Tyr704Phe	p.Y704F	ENST00000378444	NM_001123385.1	704	tAt/tTt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	67	357	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	57	390	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	64	459	1	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	46	317	0	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																														
ABL1	25	MSKCC	GRCh37	9	133760023	133760024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	106	786	0	ENST00000318560.5:c.2352dup	p.Arg785GlnfsTer7	p.R785Qfs*7	ENST00000318560	NM_005157.4	782	-/C																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	60	321	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
CBFB	865	MSKCC	GRCh37	16	67063359	67063359	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	49	247	0	ENST00000412916.2:c.54del	p.Phe18LeufsTer4	p.F18Lfs*4	ENST00000412916		17	Ttt/tt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988340	36988340	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	53	301	0	ENST00000354822.5:c.313del	p.Val105CysfsTer20	p.V105Cfs*20	ENST00000354822	NM_001079668.2	105	Gtg/tg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106480	27106481	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	124	638	0	ENST00000324856.7:c.6092dup	p.Tyr2031Ter	p.Y2031*	ENST00000324856	NM_006015.4	2031	tat/tAat																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	31	237	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37081709	37081709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	72	494	0	ENST00000231790.2:c.1591G>A	p.Val531Met	p.V531M	ENST00000231790	NM_000249.3	531	Gtg/Atg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	97	753	4	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																														
FAM175A	0	MSKCC	GRCh37	4	84391525	84391525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	24	385	0	ENST00000321945.7:c.307C>T	p.Arg103Cys	p.R103C	ENST00000321945	NM_139076.2	103	Cgt/Tgt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504578	103504578	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	34	353	0	ENST00000355739.4:c.204del	p.Arg69GlufsTer15	p.R69Efs*15	ENST00000355739	NM_000123.3	67	Ttt/tt																																																																														
RFWD2	0	MSKCC	GRCh37	1	175958508	175958508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	57	365	0	ENST00000367669.3:c.1837A>G	p.Ile613Val	p.I613V	ENST00000367669	NM_022457.5	613	Att/Gtt																																																																														
CDK4	1019	MSKCC	GRCh37	12	58143279	58143280	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	29	326	0	ENST00000257904.6:c.640_641del	p.Phe214LeufsTer5	p.F214Lfs*5	ENST00000257904	NM_000075.3	214	TTc/c																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049760	16049760	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	53	420	0	ENST00000268712.3:c.1012del	p.Thr338GlnfsTer65	p.T338Qfs*65	ENST00000268712	NM_006311.3	338	Aca/ca																																																																														
EZH1	2145	MSKCC	GRCh37	17	40879754	40879754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	66	546	0	ENST00000428826.2:c.145G>T	p.Val49Phe	p.V49F	ENST00000428826		49	Gtt/Ttt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573619	48573619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	23	351	0	ENST00000342988.3:c.203C>A	p.Pro68His	p.P68H	ENST00000342988	NM_005359.5	68	cCt/cAt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855584	45855584	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	116	697	1	ENST00000391945.4:c.2073del	p.Lys692SerfsTer17	p.K692Sfs*17	ENST00000391945	NM_000400.3	691	ggG/gg																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907619	111907619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	56	314	0	ENST00000393256.3:c.395-2A>G		p.X132_splice	ENST00000393256	NM_006538.4	132																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591149	67591251	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	TGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGG	TGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGG	-			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	33	339	0	ENST00000274335.5:c.1743_1750del		p.X581_splice	ENST00000274335		581	tTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGG/t																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469946	157469946	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	72	618	0	ENST00000346085.5:c.2740A>G	p.Ser914Gly	p.S914G	ENST00000346085	NM_020732.3	914	Agc/Ggc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900300	101900300	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	32	397	0	ENST00000374994.4:c.734A>G	p.Glu245Gly	p.E245G	ENST00000374994	NM_004612.2	245	gAg/gGg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778081	135778081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	88	550	1	ENST00000298552.3:c.2302C>T	p.Arg768Cys	p.R768C	ENST00000298552	NM_001162426.1	768	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	209	690	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	88	351	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528742	8528742	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1061345		P-0043915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	43	294	0	ENST00000356435.5:c.390G>T	p.Met130Ile	p.M130I	ENST00000356435		130	atG/atT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	554	395	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ALK	238	MSKCC	GRCh37	2	29551335	29551335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	594	501	0	ENST00000389048.3:c.1295G>T	p.Gly432Val	p.G432V	ENST00000389048	NM_004304.4	432	gGc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112116494	112116494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	511	365	0	ENST00000257430.4:c.539T>A	p.Leu180Ter	p.L180*	ENST00000257430	NM_000038.5	180	tTa/tAa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860053	57860053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200444628		P-0005471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	507	711	0	ENST00000228682.2:c.793C>T	p.Arg265Trp	p.R265W	ENST00000228682	NM_005269.2	265	Cgg/Tgg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16068324	16068324	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	52	231	0	ENST00000268712.3:c.587A>G	p.Glu196Gly	p.E196G	ENST00000268712	NM_006311.3	196	gAa/gGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974744	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0005471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	122	213	0	ENST00000304494.5:c.52_83del	p.Thr18AlafsTer15	p.T18Afs*15	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTg/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974744	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0005471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	122	213	0	ENST00000304494.5:c.52_83del	p.Thr18AlafsTer15	p.T18Afs*15	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTg/g																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573573	48573574	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATTGGATTCTTT			P-0005471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	242	478	0	ENST00000342988.3:c.161_173dup	p.Thr59GlyfsTer15	p.T59Gfs*15	ENST00000342988	NM_005359.5	53	gaa/gAATTGGATTCTTTaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	46	250	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
HGF	3082	MSKCC	GRCh37	7	81381472	81381472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	64	642	1	ENST00000222390.5:c.589C>T	p.Arg197Cys	p.R197C	ENST00000222390	NM_000601.4	197	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576888	7576893	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTTG	TCTTTG	C			P-0010532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	106	529	0	ENST00000269305.4:c.953_958delinsG	p.Pro318ArgfsTer17	p.P318Rfs*17	ENST00000269305	NM_001126112.2	318	cCAAAGAag/cGag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0042436-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			761	187	593	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042436-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	58	406	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0043132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	166	579	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0043132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	17	602	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0043132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	73	547	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832031	72832031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144091993		P-0043132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	111	553	0	ENST00000268489.5:c.4550C>T	p.Ser1517Leu	p.S1517L	ENST00000268489	NM_006885.3	1517	tCg/tTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70333162	70333162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0043132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	227	622	0	ENST00000373644.4:c.1067A>G	p.Gln356Arg	p.Q356R	ENST00000373644	NM_030625.2	356	cAg/cGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434106	49434122	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCAGCCTTAAAGGCA	ACCCAGCCTTAAAGGCA	-			P-0043132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	365	612	0	ENST00000301067.7:c.7431_7447del	p.Ala2478SerfsTer22	p.A2478Sfs*22	ENST00000301067	NM_003482.3	2477	gtTGCCTTTAAGGCTGGGTct/gtct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930601	32930601	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	246	369	1	ENST00000380152.3:c.7472A>T	p.Gln2491Leu	p.Q2491L	ENST00000380152		2491	cAg/cTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3799684	3800137	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTTGTTTTAAAATAAGAAAACATGTTTTATTAACTAAAATTTATCTGTTGAGTATAAACTATAGGGTCTCTGGAATGTTATTTTGTAACTAGTTCTTCAAACAAAAAGACATGATGGCCCCTTAAAATCTCAAGTACATGTAATAACGGAATGAACAGAAAATTTAATTTCGTAGAACACTACAATGTCTTTTTCTACATATTCCACTATCATTTCTTTTCCTTCTGTTTTTTCAGAGACAAGGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGACCATGGCTCACTGCAGCCTTAACCTCCTAGGCTCAAGTGATCCTCCTGGGTAGCTGGGACTATAGGCATGCACCACCAGGACTGGCTAATTTTTTGATTTTTTGTGGAGATGAGGGTCTCATTATGTTGCCAAGGCTGAACTCAAACTCACCCCGGTTCTGAGTAGCTGGG	CCTTGTTTTAAAATAAGAAAACATGTTTTATTAACTAAAATTTATCTGTTGAGTATAAACTATAGGGTCTCTGGAATGTTATTTTGTAACTAGTTCTTCAAACAAAAAGACATGATGGCCCCTTAAAATCTCAAGTACATGTAATAACGGAATGAACAGAAAATTTAATTTCGTAGAACACTACAATGTCTTTTTCTACATATTCCACTATCATTTCTTTTCCTTCTGTTTTTTCAGAGACAAGGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGACCATGGCTCACTGCAGCCTTAACCTCCTAGGCTCAAGTGATCCTCCTGGGTAGCTGGGACTATAGGCATGCACCACCAGGACTGGCTAATTTTTTGATTTTTTGTGGAGATGAGGGTCTCATTATGTTGCCAAGGCTGAACTCAAACTCACCCCGGTTCTGAGTAGCTGGG	-			P-0043132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	222	322	0	ENST00000262367.5:c.3780-453_3780del		p.X1260_splice	ENST00000262367	NM_004380.2	1260																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965925	25965925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	132	593	0	ENST00000435504.4:c.3281G>A	p.Gly1094Asp	p.G1094D	ENST00000435504		1094	gGt/gAt																																																																														
BARD1	580	MSKCC	GRCh37	2	215646021	215646021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	39	454	0	ENST00000260947.4:c.577G>A	p.Glu193Lys	p.E193K	ENST00000260947	NM_000465.2	193	Gag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707725	176707725	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0043132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	308	448	0	ENST00000439151.2:c.5782G>T	p.Gly1928Ter	p.G1928*	ENST00000439151	NM_022455.4	1928	Gga/Tga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441282	52441285	+	frameshift_variant	Frame_Shift_Del	DEL	CGCA	CGCA	-			P-0000159-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	20	400	0	ENST00000460680.1:c.485_488delTGCG	p.Val162GlyfsTer24	p.V162Gfs*24	ENST00000460680	NM_004656.3	162	gTGCGg/gg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17127383	17127385	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0000159-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	17	336	0	ENST00000285071.4:c.469_471delTTC	p.Phe157del	p.F157del	ENST00000285071	NM_144997.5	157	TTC/-																																																																														
ATM	472	MSKCC	GRCh37	11	108151750	108151750	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	144	297	0	ENST00000278616.4:c.3431T>A	p.Leu1144Ter	p.L1144*	ENST00000278616	NM_000051.3	1144	tTg/tAg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022460	31022460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	64	188	0	ENST00000375687.4:c.1945G>A	p.Gly649Arg	p.G649R	ENST00000375687	NM_015338.5	649	Gga/Aga																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128051118	128051118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002675-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	27	452	0	ENST00000285398.2:c.205G>A	p.Asp69Asn	p.D69N	ENST00000285398	NM_000122.1	69	Gac/Aac																																																																														
POLE	5426	MSKCC	GRCh37	12	133240637	133240637	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002675-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	189	501	0	ENST00000320574.5:c.2659A>C	p.Lys887Gln	p.K887Q	ENST00000320574	NM_006231.2	887	Aaa/Caa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	25	261	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	43	207	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73774968	73774968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	24	183	0	ENST00000254810.4:c.205C>A	p.Gln69Lys	p.Q69K	ENST00000254810	NM_005324.3	69	Cag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29556888	29556889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAAACCATAGCTATAATGAAGAACTTGCTAGATAATCC			P-0003214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	16	151	0	ENST00000358273.4:c.2923_2924insCCAAACCATAGCTATAATGAAGAACTTGCTAGATAATC	p.His975ProfsTer4	p.H975Pfs*4	ENST00000358273	NM_001042492.2	962	-/CAAACCATAGCTATAATGAAGAACTTGCTAGATAATCC																																																																														
IRF4	3662	MSKCC	GRCh37	6	395006	395007	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0003214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	20	143	0	ENST00000380956.4:c.402_403del	p.Gly135SerfsTer76	p.G135Sfs*76	ENST00000380956	NM_001195286.1	134	aaAGga/aaga																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748278	41748278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	10	277	2	ENST00000226382.2:c.491C>T	p.Ala164Val	p.A164V	ENST00000226382	NM_003924.3	164	gCg/gTg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233216	69233216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4512	447	404	0	ENST00000462284.1:c.1081G>C	p.Glu361Gln	p.E361Q	ENST00000462284	NM_002392.5	361	Gag/Cag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774181	66774182	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	TCT			P-0003898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	25	333	0	ENST00000307102.5:c.657_658delinsTCT	p.Met219IlefsTer67	p.M219Ifs*67	ENST00000307102	NM_002755.3	219	atGGcc/atTCTcc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584575	52584575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	89	257	0	ENST00000394830.3:c.4438C>T	p.Gln1480Ter	p.Q1480*	ENST00000394830	NM_018313.4	1480	Cag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439901	52439901	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	153	211	0	ENST00000460680.1:c.811del	p.Ile271PhefsTer64	p.I271Ffs*64	ENST00000460680	NM_004656.3	271	Att/tt																																																																														
TERT	7015	MSKCC	GRCh37	5	1294171	1294171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	54	105	0	ENST00000310581.5:c.830G>A	p.Arg277Lys	p.R277K	ENST00000310581	NM_198253.2	277	aGa/aAa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724541	162724541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	88	167	0	ENST00000367921.3:c.313C>T	p.Arg105Cys	p.R105C	ENST00000367921	NM_006182.2	105	Cgc/Tgc																																																																														
CIC	23152	MSKCC	GRCh37	19	42793442	42793442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	46	142	0	ENST00000575354.2:c.1244G>A	p.Arg415Gln	p.R415Q	ENST00000575354	NM_015125.3	415	cGg/cAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38952443	38952443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	104	169	0	ENST00000357387.3:c.2982G>T	p.Arg994Ser	p.R994S	ENST00000357387	NM_152756.3	994	agG/agT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184757	32184757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	35	187	0	ENST00000375023.3:c.1826G>T	p.Gly609Val	p.G609V	ENST00000375023	NM_004557.3	609	gGa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579559	7579559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	46	153	0	ENST00000269305.4:c.128delT	p.Leu43Ter	p.L43*	ENST00000269305	NM_001126112.2	43	tTg/tg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575142	48575143	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0004252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	88	193	0	ENST00000342988.3:c.336_337del	p.Lys113IlefsTer7	p.K113Ifs*7	ENST00000342988	NM_005359.5	112	gtTAaa/gtaa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	48	387	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	45	599	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864984	57864984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	37	722	0	ENST00000228682.2:c.2461C>T	p.Pro821Ser	p.P821S	ENST00000228682	NM_005269.2	821	Cca/Tca																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10251517	10251517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	30	467	0	ENST00000340748.4:c.3415C>A	p.Leu1139Met	p.L1139M	ENST00000340748		1139	Ctg/Atg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0005007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	60	301	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	362	417	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911505	131911505	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	89	388	0	ENST00000265335.6:c.250C>G	p.Leu84Val	p.L84V	ENST00000265335		84	Ctg/Gtg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	81	387	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	93	369	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	147	536	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094410	27094413	+	frameshift_variant	Frame_Shift_Del	DEL	AATC	AATC	-			P-0006083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	95	383	0	ENST00000324856.7:c.3118_3121del	p.Asn1040CysfsTer18	p.N1040Cfs*18	ENST00000324856	NM_006015.4	1040	AATCtg/tg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584513	52584516	+	frameshift_variant	Frame_Shift_Del	DEL	TGAG	TGAG	-			P-0006083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	176	524	0	ENST00000394830.3:c.4497_4500del	p.His1499GlnfsTer5	p.H1499Qfs*5	ENST00000394830	NM_018313.4	1499	caCTCA/ca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	90	467	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481601	20481601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	55	598	1	ENST00000346618.3:c.670G>A	p.Val224Ile	p.V224I	ENST00000346618	NM_001949.4	224	Gtt/Att																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655364	45655364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	78	644	0	ENST00000407780.3:c.488G>A	p.Gly163Asp	p.G163D	ENST00000407780	NM_001283052.1	163	gGc/gAc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	144	353	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	249	246	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	249	246	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105918	27105918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	214	346	0	ENST00000324856.7:c.5529del	p.Trp1844GlyfsTer39	p.W1844Gfs*39	ENST00000324856	NM_006015.4	1843	caC/ca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023691	27023692	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AA			P-0006353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	163	388	0	ENST00000324856.7:c.797_798delinsAA	p.Phe266Ter	p.F266*	ENST00000324856	NM_006015.4	266	tTC/tAA																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006450-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			878	168	492	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123900	46123936	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTTAGGCGGATTCGCGAAGGTGAGTGGAAGTTTTA	ACTTTAGGCGGATTCGCGAAGGTGAGTGGAAGTTTTA	-			P-0006450-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			860	85	356	0	ENST00000334344.6:c.167_186+17del		p.X56_splice	ENST00000334344	NM_152641.2	56																																																																															
RASA1	5921	MSKCC	GRCh37	5	86564444	86564445	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0006450-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	113	464	0	ENST00000274376.6:c.177_178dup	p.Thr60LysfsTer14	p.T60Kfs*14	ENST00000274376	NM_002890.2	59	gga/ggAAa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941109	36941109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006450-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	75	533	1	ENST00000361632.4:c.230G>A	p.Arg77His	p.R77H	ENST00000361632		77	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106440	27106467	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCACAAGCACCCAGAACGGAAGCAG	GCACCACAAGCACCCAGAACGGAAGCAG	-			P-0006450-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			746	124	317	0	ENST00000324856.7:c.6058_6085del	p.Lys2020Ter	p.K2020*	ENST00000324856	NM_006015.4	2017	ctGCACCACAAGCACCCAGAACGGAAGCAG/ct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	205	254	0				ENST00000310581	NM_198253.2																																																																																
ERRFI1	54206	MSKCC	GRCh37	1	8074111	8074115	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	AAAAG	AAAAG	TTA			P-0006871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	631	784	1	ENST00000377482.5:c.544_548delinsTAA	p.Leu182Ter	p.L182*	ENST00000377482	NM_018948.3	182	CTTTTa/TAAa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439833	52439834	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	119	454	0	ENST00000460680.1:c.878dup	p.Leu294AlafsTer13	p.L294Afs*13	ENST00000460680	NM_004656.3	293	ccg/ccCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0007016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	19	301	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	10	258	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575195	48575195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	23	293	0	ENST00000342988.3:c.389C>T	p.Pro130Leu	p.P130L	ENST00000342988	NM_005359.5	130	cCa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578397	7578397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	10	251	0	ENST00000269305.4:c.533A>C	p.His178Pro	p.H178P	ENST00000269305	NM_001126112.2	178	cAc/cCc																																																																														
ATR	545	MSKCC	GRCh37	3	142277555	142277555	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	37	289	1	ENST00000350721.4:c.1796T>C	p.Ile599Thr	p.I599T	ENST00000350721	NM_001184.3	599	aTt/aCt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220276	5220276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	32	339	0	ENST00000357368.4:c.3544G>T	p.Glu1182Ter	p.E1182*	ENST00000357368	NM_002850.3	1182	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629206	187629207	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	15	265	0	ENST00000441802.2:c.1775_1776del	p.Ser592CysfsTer3	p.S592Cfs*3	ENST00000441802	NM_005245.3	592	tCT/t																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	94	188	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	110	287	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	302	240	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118355027	118355032	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGGTA	AAGGTA	-			P-0007205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	161	189	0	ENST00000534358.1:c.4218+3_4218+8del		p.X1406_splice	ENST00000534358	NM_005933.3	1406																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	57	222	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105735	27105826	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAAATGATGAGGAGATAGCCTTTTCAGGCAAGGACAAGCCAGCTTCAGAGAATAGTGAGGAGAAGCTGATCAGTAAGTTTGACAAGCTTC	TGAAAATGATGAGGAGATAGCCTTTTCAGGCAAGGACAAGCCAGCTTCAGAGAATAGTGAGGAGAAGCTGATCAGTAAGTTTGACAAGCTTC	-			P-0007213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	198	349	0	ENST00000324856.7:c.5346_5437del	p.Glu1783SerfsTer8	p.E1783Sfs*8	ENST00000324856	NM_006015.4	1782	gtTGAAAATGATGAGGAGATAGCCTTTTCAGGCAAGGACAAGCCAGCTTCAGAGAATAGTGAGGAGAAGCTGATCAGTAAGTTTGACAAGCTTCca/gtca																																																																														
ATM	472	MSKCC	GRCh37	11	108160423	108160426	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0007213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	78	314	0	ENST00000278616.4:c.4335_4338del	p.Phe1445LeufsTer5	p.F1445Lfs*5	ENST00000278616	NM_000051.3	1444	cTGTTt/ct																																																																														
ATM	472	MSKCC	GRCh37	11	108114816	108114817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	85	291	2	ENST00000278616.4:c.640dupT	p.Ser214PhefsTer40	p.S214Ffs*40	ENST00000278616	NM_000051.3	211	-/T																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14028160	14028160	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	289	221	0	ENST00000311895.7:c.1213+1G>T		p.X405_splice	ENST00000311895	NM_005236.2	405																																																																															
ATM	472	MSKCC	GRCh37	11	108114686	108114687	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTCTGTGTACTTCAGGCTCTATCTGAAA			P-0007520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	125	192	0	ENST00000278616.4:c.505_532dup	p.Pro178LeufsTer16	p.P178Lfs*16	ENST00000278616	NM_000051.3	168	ttc/ttCTCTGTGTACTTCAGGCTCTATCTGAAAc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	22	382	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120258	70120259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	12	645	0	ENST00000245479.2:c.1261dupA	p.Ser421LysfsTer157	p.S421Kfs*157	ENST00000245479	NM_000346.3	420	-/A																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540730	187540730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	15	388	0	ENST00000441802.2:c.7010G>A	p.Ser2337Asn	p.S2337N	ENST00000441802	NM_005245.3	2337	aGc/aAc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517769	176517769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	17	546	0	ENST00000292408.4:c.379G>T	p.Asp127Tyr	p.D127Y	ENST00000292408	NM_213647.1	127	Gat/Tat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638354	176638354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	90	340	0	ENST00000439151.2:c.2954C>T	p.Ser985Phe	p.S985F	ENST00000439151	NM_022455.4	985	tCt/tTt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011150	12011150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	223	334	0	ENST00000353533.5:c.557A>G	p.Asp186Gly	p.D186G	ENST00000353533	NM_003010.3	186	gAt/gGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29563039	29563039	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0007703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	223	467	0	ENST00000358273.4:c.3974G>C	p.Arg1325Thr	p.R1325T	ENST00000358273	NM_001042492.2	1325	aGg/aCg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45375032	45375032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	52	263	0	ENST00000262160.6:c.811C>T	p.Pro271Ser	p.P271S	ENST00000262160	NM_005901.5	271	Cct/Tct																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604782	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCT	CAGCT	-			P-0007703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	109	417	0	ENST00000342988.3:c.1601_1605del	p.Gln534ProfsTer41	p.Q534Pfs*41	ENST00000342988	NM_005359.5	534	CAGCTc/c																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	108	293	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872955	136872955	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	211	547	2	ENST00000241393.3:c.543T>A	p.Asp181Glu	p.D181E	ENST00000241393	NM_003467.2	181	gaT/gaA																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441415	52441415	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	106	364	0	ENST00000460680.1:c.437G>A	p.Arg146Lys	p.R146K	ENST00000460680	NM_004656.3	146	aGg/aAg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180051053	180051053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	29	256	0	ENST00000261937.6:c.1430G>A	p.Arg477Gln	p.R477Q	ENST00000261937	NM_182925.4	477	cGg/cAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118371775	118371775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	45	349	0	ENST00000534358.1:c.6232C>T	p.Arg2078Cys	p.R2078C	ENST00000534358	NM_005933.3	2078	Cgt/Tgt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223203	5223203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	24	280	0	ENST00000357368.4:c.2600G>A	p.Arg867His	p.R867H	ENST00000357368	NM_002850.3	867	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	74	443	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089556	27089556	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	50	427	0	ENST00000324856.7:c.2512G>T	p.Gly838Ter	p.G838*	ENST00000324856	NM_006015.4	838	Gga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836292	151836292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	26	195	0	ENST00000262189.6:c.14513C>T	p.Thr4838Met	p.T4838M	ENST00000262189	NM_170606.2	4838	aCg/aTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98240450	98240450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	30	203	0	ENST00000331920.6:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000331920	NM_000264.3	412	Gca/Aca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438067	49438067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	62	313	1	ENST00000301067.7:c.5104C>T	p.Arg1702Ter	p.R1702*	ENST00000301067	NM_003482.3	1702	Cga/Tga																																																																														
STK11	6794	MSKCC	GRCh37	19	1219388	1219388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	34	395	1	ENST00000326873.7:c.440G>A	p.Arg147His	p.R147H	ENST00000326873	NM_000455.4	147	cGt/cAt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5265145	5265145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	48	375	0	ENST00000357368.4:c.442C>T	p.Arg148Trp	p.R148W	ENST00000357368	NM_002850.3	148	Cgg/Tgg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023733	31023733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	38	314	0	ENST00000375687.4:c.3218G>A	p.Arg1073His	p.R1073H	ENST00000375687	NM_015338.5	1073	cGc/cAc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682400	52682400	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	69	425	0	ENST00000394830.3:c.773del	p.Asn258MetfsTer25	p.N258Mfs*25	ENST00000394830	NM_018313.4	258	aAt/at																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157510806	157510806	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	26	324	1	ENST00000346085.5:c.3586del	p.Gln1196SerfsTer15	p.Q1196Sfs*15	ENST00000346085	NM_020732.3	1194	aCc/ac																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	18	357	0	ENST00000345146.2:c.394C>G	p.Arg132Gly	p.R132G	ENST00000345146	NM_005896.2	132	Cgt/Ggt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877840	151877855	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGTGTATCAGTTAC	TCTGTGTATCAGTTAC	-			P-0008286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	143	293	0	ENST00000262189.6:c.7090_7105del	p.Val2364IlefsTer3	p.V2364Ifs*3	ENST00000262189	NM_170606.2	2364	GTAACTGATACACAGAat/at																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074249	8074249	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	313	702	3	ENST00000377482.5:c.410del	p.Pro137LeufsTer38	p.P137Lfs*38	ENST00000377482	NM_018948.3	137	cCt/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0008658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	70	259	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495564	56495564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	234	387	1	ENST00000267101.3:c.3754G>T	p.Ala1252Ser	p.A1252S	ENST00000267101	NM_001982.3	1252	Gca/Tca																																																																														
POLE	5426	MSKCC	GRCh37	12	133244235	133244235	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	213	290	0	ENST00000320574.5:c.2174-1G>T		p.X725_splice	ENST00000320574	NM_006231.2	725																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061028	38061028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	88	269	0	ENST00000250448.2:c.961G>C	p.Glu321Gln	p.E321Q	ENST00000250448	NM_004496.3	321	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0009187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	234	547	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662388	67662388	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	118	726	0	ENST00000264010.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000264010	NM_006565.3	545	tAt/tGt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53230757	53230757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	149	841	1	ENST00000375401.3:c.2036G>A	p.Arg679His	p.R679H	ENST00000375401	NM_004187.3	679	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	140	548	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	77	539	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
RHEB	6009	MSKCC	GRCh37	7	151181857	151181857	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	132	895	1	ENST00000262187.5:c.158A>T	p.Glu53Val	p.E53V	ENST00000262187	NM_005614.3	53	gAa/gTa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584709	48584709	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	96	617	2	ENST00000342988.3:c.788-1G>T		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																															
TP53	7157	MSKCC	GRCh37	17	7577569	7577572	+	frameshift_variant	Frame_Shift_Del	DEL	ACAT	ACAT	-			P-0009191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	108	523	0	ENST00000269305.4:c.709_712del	p.Met237ValfsTer9	p.M237Vfs*9	ENST00000269305	NM_001126112.2	237	ATGTgt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	294	938	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46733212	46733212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	128	918	2	ENST00000371975.4:c.973G>A	p.Gly325Arg	p.G325R	ENST00000371975	NM_003579.3	325	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	18	83	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0009825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	26	280	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602320	10602320	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	87	463	1	ENST00000171111.5:c.1258del	p.Val420SerfsTer38	p.V420Sfs*38	ENST00000171111	NM_203500.1	420	Gtc/tc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198283298	198283298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	85	574	0	ENST00000335508.6:c.430G>A	p.Asp144Asn	p.D144N	ENST00000335508	NM_012433.2	144	Gat/Aat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509880	106509880	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	248	653	0	ENST00000359195.3:c.1874G>C	p.Gly625Ala	p.G625A	ENST00000359195	NM_002649.2	625	gGg/gCg																																																																														
BRAF	673	MSKCC	GRCh37	7	140624473	140624473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	36	87	0	ENST00000288602.6:c.31G>A	p.Gly11Ser	p.G11S	ENST00000288602	NM_004333.4	11	Ggc/Agc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243986	46243986	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	179	742	0	ENST00000334344.6:c.2080C>T	p.Gln694Ter	p.Q694*	ENST00000334344	NM_152641.2	694	Cag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145795	11145795	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	71	477	0	ENST00000344626.4:c.4157A>T	p.Lys1386Met	p.K1386M	ENST00000344626	NM_003072.3	1386	aAg/aTg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464443	25464443	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	68	443	0	ENST00000264709.3:c.2070del	p.Thr691HisfsTer14	p.T691Hfs*14	ENST00000264709	NM_175629.2	690	gtC/gt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40371847	40371848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	72	667	0	ENST00000293328.3:c.563_564insA	p.Leu189AlafsTer30	p.L189Afs*30	ENST00000293328	NM_012448.3	188	ccg/ccAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	47	324	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430419	78430419	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	82	453	0	ENST00000370768.2:c.749T>A	p.Met250Lys	p.M250K	ENST00000370768	NM_003902.3	250	aTg/aAg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98224202	98224202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1171	96	456	0	ENST00000331920.6:c.2639G>T	p.Gly880Val	p.G880V	ENST00000331920	NM_000264.3	880	gGa/gTa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222326	2222326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	82	312	0	ENST00000398665.3:c.3158C>T	p.Ala1053Val	p.A1053V	ENST00000398665	NM_032482.2	1053	gCg/gTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302810	15302810	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	71	236	0	ENST00000263388.2:c.640C>A	p.Gln214Lys	p.Q214K	ENST00000263388	NM_000435.2	214	Cag/Aag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208279	5208280	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1501	130	540	0	ENST00000357368.4:c.5610dup	p.Gly1871TrpfsTer24	p.G1871Wfs*24	ENST00000357368	NM_002850.3	1870	-/T																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	90	160	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	161	298	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1305	44	550	2	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
ATR	545	MSKCC	GRCh37	3	142218472	142218472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	466	415	0	ENST00000350721.4:c.5377G>A	p.Ala1793Thr	p.A1793T	ENST00000350721	NM_001184.3	1793	Gca/Aca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528168	157528168	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	464	351	0	ENST00000346085.5:c.5893A>G	p.Met1965Val	p.M1965V	ENST00000346085	NM_020732.3	1965	Atg/Gtg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67197001	67197001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	481	592	1	ENST00000312629.5:c.244T>C	p.Phe82Leu	p.F82L	ENST00000312629	NM_003952.2	82	Ttc/Ctc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004694	16004694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	1374	675	0	ENST00000268712.3:c.2560G>A	p.Glu854Lys	p.E854K	ENST00000268712	NM_006311.3	854	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577139	7577140	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	1057	551	0	ENST00000269305.4:c.798dup	p.Arg267ThrfsTer5	p.R267Tfs*5	ENST00000269305	NM_001126112.2	266	-/A																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134584	2134586	+	frameshift_variant	Frame_Shift_Del	DEL	GTG	GTG	A			P-0010701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	478	499	0	ENST00000219476.3:c.4361_4363delinsA	p.Ser1454LysfsTer69	p.S1454Kfs*69	ENST00000219476	NM_000548.3	1454	aGTGgc/aAgc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	49	245	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101468	27101468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	85	405	1	ENST00000324856.7:c.4750C>T	p.Gln1584Ter	p.Q1584*	ENST00000324856	NM_006015.4	1584	Cag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	63	273	0	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	113	288	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431635	6431635	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	137	192	0	ENST00000356142.4:c.188A>G	p.Asp63Gly	p.D63G	ENST00000356142	NM_018890.3	63	gAt/gGt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	68	372	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112379	115112379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	106	200	0	ENST00000257566.3:c.1361G>A	p.Arg454His	p.R454H	ENST00000257566	NM_016569.3	454	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106228	27106244	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGCCACCGGAACAT	CAGAGCCACCGGAACAT	-			P-0011032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	190	395	1	ENST00000324856.7:c.5841_5857del	p.Ser1948AspfsTer9	p.S1948Dfs*9	ENST00000324856	NM_006015.4	1947	CAGAGCCACCGGAACATc/c																																																																														
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	64	413	0	ENST00000278616.4:c.6908dupA	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	258	342	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71008411	71008411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	377	589	0	ENST00000318789.4:c.2021A>T	p.Glu674Val	p.E674V	ENST00000318789	NM_032682.5	674	gAg/gTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157256661	157256661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	382	399	0	ENST00000346085.5:c.1988A>G	p.Asn663Ser	p.N663S	ENST00000346085	NM_020732.3	663	aAc/aGc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668635	52668636	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	348	424	0	ENST00000394830.3:c.1283dup	p.Ser429IlefsTer15	p.S429Ifs*15	ENST00000394830	NM_018313.4	428	ata/atTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681049	30681049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	77	209	0	ENST00000376406.3:c.670G>A	p.Glu224Lys	p.E224K	ENST00000376406	NM_014641.2	224	Gaa/Aaa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936768	78936768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	117	442	0	ENST00000306801.3:c.3850G>A	p.Gly1284Arg	p.G1284R	ENST00000306801	NM_020761.2	1284	Gga/Aga																																																																														
RAD50	10111	MSKCC	GRCh37	5	131926976	131926976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	121	293	0	ENST00000265335.6:c.1513A>G	p.Ile505Val	p.I505V	ENST00000265335		505	Ata/Gta																																																																														
BRAF	673	MSKCC	GRCh37	7	140494227	140494227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	109	505	0	ENST00000288602.6:c.1021C>A	p.Pro341Thr	p.P341T	ENST00000288602	NM_004333.4	341	Cca/Aca																																																																														
ATM	472	MSKCC	GRCh37	11	108196125	108196125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	82	282	0	ENST00000278616.4:c.6661G>A	p.Glu2221Lys	p.E2221K	ENST00000278616	NM_000051.3	2221	Gag/Aag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0011223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	137	527	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261023	16261023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	69	408	0	ENST00000375759.3:c.8288C>T	p.Ala2763Val	p.A2763V	ENST00000375759	NM_015001.2	2763	gCa/gTa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018179	48018179	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	98	545	0	ENST00000234420.5:c.374A>G	p.Lys125Arg	p.K125R	ENST00000234420	NM_000179.2	125	aAa/aGa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209103903	209103903	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	88	467	0	ENST00000345146.2:c.1046A>G	p.Asn349Ser	p.N349S	ENST00000345146	NM_005896.2	349	aAt/aGt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056145	26056145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	88	449	0	ENST00000343677.2:c.512C>G	p.Ala171Gly	p.A171G	ENST00000343677	NM_005319.3	171	gCt/gGt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709079	117709079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	123	632	1	ENST00000368508.3:c.1878C>A	p.Phe626Leu	p.F626L	ENST00000368508	NM_002944.2	626	ttC/ttA																																																																														
HGF	3082	MSKCC	GRCh37	7	81355269	81355269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	103	637	0	ENST00000222390.5:c.1105G>T	p.Asp369Tyr	p.D369Y	ENST00000222390	NM_000601.4	369	Gat/Tat																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588124	69588124	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	216	749	1	ENST00000168712.1:c.574C>T	p.Arg192Ter	p.R192*	ENST00000168712	NM_002007.2	192	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877391	40877391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	96	457	0	ENST00000373198.4:c.2305G>T	p.Val769Leu	p.V769L	ENST00000373198	NM_133170.3	769	Gtg/Ttg																																																																														
BTK	695	MSKCC	GRCh37	X	100608301	100608301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	70	718	1	ENST00000308731.7:c.1789C>T	p.Pro597Ser	p.P597S	ENST00000308731	NM_000061.2	597	Cca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579449	7579470	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCTGCTGGTGCAGGGGCCAC	GAGCTGCTGGTGCAGGGGCCAC	-			P-0011223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	100	533	0	ENST00000269305.4:c.217_238del	p.Val73LeufsTer43	p.V73Lfs*43	ENST00000269305	NM_001126112.2	73	GTGGCCCCTGCACCAGCAGCTCct/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	140	667	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464463	25464463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	113	565	0	ENST00000264709.3:c.2050G>A	p.Val684Ile	p.V684I	ENST00000264709	NM_175629.2	684	Gtc/Atc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502477	186502477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	111	504	0	ENST00000323963.5:c.200G>T	p.Cys67Phe	p.C67F	ENST00000323963		67	tGt/tTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55270253	55270253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	149	533	0	ENST00000275493.2:c.3206A>G	p.Tyr1069Cys	p.Y1069C	ENST00000275493	NM_005228.3	1069	tAc/tGc																																																																														
ARAF	369	MSKCC	GRCh37	X	47430346	47430346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	62	453	0	ENST00000377045.4:c.1621G>A	p.Ala541Thr	p.A541T	ENST00000377045	NM_001654.4	541	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579525	7579529	+	frameshift_variant	Frame_Shift_Del	DEL	GAACC	GAACC	-			P-0011329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	289	389	0	ENST00000269305.4:c.158_162del	p.Trp53TyrfsTer2	p.W53Yfs*2	ENST00000269305	NM_001126112.2	53	tGGTTC/t																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989508	212989508	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	132	311	0	ENST00000342788.4:c.203T>A	p.Ile68Asn	p.I68N	ENST00000342788	NM_005235.2	68	aTt/aAt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575572	64575572	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0011394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	66	228	0	ENST00000337652.1:c.461-1G>A		p.X154_splice	ENST00000337652	NM_130803.2	154																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425329	49425329	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	85	530	0	ENST00000301067.7:c.13159C>T	p.Gln4387Ter	p.Q4387*	ENST00000301067	NM_003482.3	4387	Cag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	55	622	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267290	41267290	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	181	421	0	ENST00000349496.5:c.874A>G	p.Lys292Glu	p.K292E	ENST00000349496	NM_001904.3	292	Aaa/Gaa																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176118152	176118152	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	126	337	0	ENST00000367669.3:c.821A>T	p.Asn274Ile	p.N274I	ENST00000367669	NM_022457.5	274	aAt/aTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165924	47165924	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	334	500	1	ENST00000409792.3:c.202C>T	p.Gln68Ter	p.Q68*	ENST00000409792	NM_014159.6	68	Cag/Tag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39937121	39937121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	54	529	1	ENST00000378444.4:c.62G>A	p.Arg21His	p.R21H	ENST00000378444	NM_001123385.1	21	cGc/cAc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011566-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			201	279	315	2	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011566-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			632	222	579	1	ENST00000369535.4:c.37G>A	p.Gly13Ser	p.G13S	ENST00000369535	NM_002524.4	13	Ggt/Agt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023205	27023221	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGGAACGCGGGCCCT	ACGGGAACGCGGGCCCT	-			P-0011566-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			174	100	213	0	ENST00000324856.7:c.312_328delCGGGAACGCGGGCCCTA	p.Asn104LysfsTer7	p.N104Kfs*7	ENST00000324856	NM_006015.4	104	aACGGGAACGCGGGCCCT/a																																																																														
SDHB	6390	MSKCC	GRCh37	1	17349200	17349200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011566-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			356	213	543	1	ENST00000375499.3:c.668G>T	p.Arg223Ile	p.R223I	ENST00000375499	NM_003000.2	223	aGa/aTa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631574	28631574	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011566-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			518	222	561	0	ENST00000241453.7:c.394A>C	p.Lys132Gln	p.K132Q	ENST00000241453	NM_004119.2	132	Aaa/Caa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	890	483	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363313	40363313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	158	362	0	ENST00000397332.2:c.916G>T	p.Asp306Tyr	p.D306Y	ENST00000397332	NM_001033082.2	306	Gat/Tat																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52621370	52621370	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	684	505	0	ENST00000394830.3:c.3047A>G	p.Lys1016Arg	p.K1016R	ENST00000394830	NM_018313.4	1016	aAg/aGg																																																																														
SDHA	6389	MSKCC	GRCh37	5	224569	224569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	607	445	0	ENST00000264932.6:c.245A>G	p.Glu82Gly	p.E82G	ENST00000264932	NM_004168.2	82	gAg/gGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	22	269	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	79	468	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257770	16257770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	18	247	0	ENST00000375759.3:c.5035G>A	p.Val1679Ile	p.V1679I	ENST00000375759	NM_015001.2	1679	Gtc/Atc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668826	52668826	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147499494		P-0012101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	20	265	0	ENST00000394830.3:c.1093C>T	p.Arg365Cys	p.R365C	ENST00000394830	NM_018313.4	365	Cgc/Tgc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18446907	18446909	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0012101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	35	312	0	ENST00000266497.5:c.994_996del	p.His332del	p.H332del	ENST00000266497		331	gATCat/gat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11269466	11269466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	20	646	1	ENST00000361445.4:c.3704G>A	p.Arg1235Gln	p.R1235Q	ENST00000361445	NM_004958.3	1235	cGg/cAg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248461	59248461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			978	100	412	0	ENST00000371222.2:c.282del	p.Thr95ProfsTer9	p.T95Pfs*9	ENST00000371222	NM_002228.3	94	ccC/cc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990724	7990724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	43	495	1	ENST00000319144.4:c.37G>A	p.Asp13Asn	p.D13N	ENST00000319144	NM_001139.2	13	Gac/Aac																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740544	58740545	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0012423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			147	15	709	2	ENST00000305921.3:c.1450_1451del	p.Leu484LysfsTer4	p.L484Kfs*4	ENST00000305921	NM_003620.3	483	acTTta/acta																																																																														
XPO1	7514	MSKCC	GRCh37	2	61729409	61729409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	15	778	0	ENST00000401558.2:c.338C>T	p.Thr113Met	p.T113M	ENST00000401558	NM_003400.3	113	aCg/aTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023109	31023109	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	11	620	0	ENST00000375687.4:c.2594A>G	p.Glu865Gly	p.E865G	ENST00000375687	NM_015338.5	865	gAa/gGa																																																																														
EP300	2033	MSKCC	GRCh37	22	41513329	41513330	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0012423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			189	15	629	0	ENST00000263253.7:c.234_235del	p.His78GlnfsTer11	p.H78Qfs*11	ENST00000263253	NM_001429.3	78	cAT/c																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713546	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0012423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	22	468	0	ENST00000359013.4:c.946_948delAAG	p.Lys316del	p.K316del	ENST00000359013	NM_001024847.2	315	gAGAag/gag																																																																														
TEK	7010	MSKCC	GRCh37	9	27157997	27157997	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012423-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	17	754	0	ENST00000380036.4:c.221T>C	p.Val74Ala	p.V74A	ENST00000380036	NM_000459.3	74	gTt/gCt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	28	429	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0012553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	155	549	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146653	185146653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	71	409	0	ENST00000265026.3:c.284C>T	p.Thr95Met	p.T95M	ENST00000265026	NM_004721.4	95	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557362	187557362	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	39	446	0	ENST00000441802.2:c.4000C>T	p.Gln1334Ter	p.Q1334*	ENST00000441802	NM_005245.3	1334	Caa/Taa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878963	117878963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	89	644	0	ENST00000297338.2:c.6C>G	p.Phe2Leu	p.F2L	ENST00000297338	NM_006265.2	2	ttC/ttG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433575	49433575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	81	816	0	ENST00000301067.7:c.7978G>T	p.Glu2660Ter	p.E2660*	ENST00000301067	NM_003482.3	2660	Gaa/Taa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488222	56488222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	59	572	2	ENST00000267101.3:c.1741G>A	p.Asp581Asn	p.D581N	ENST00000267101	NM_001982.3	581	Gat/Aat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044711	47044711	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	78	383	0	ENST00000329236.7:c.1878del	p.Glu627ArgfsTer97	p.E627Rfs*97	ENST00000329236	NM_001204466.1	626	gCc/gc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0012606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	232	384	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	104	348	2	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0012606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	178	378	0	ENST00000269305.4:c.281C>G	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tGa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509514	149509514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	105	286	0	ENST00000261799.4:c.1385C>G	p.Pro462Arg	p.P462R	ENST00000261799	NM_002609.3	462	cCg/cGg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344629	118344629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1311	158	564	1	ENST00000534358.1:c.2755G>A	p.Glu919Lys	p.E919K	ENST00000534358	NM_005933.3	919	Gaa/Aaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645327	67645327	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	143	379	0	ENST00000264010.4:c.592C>T	p.Gln198Ter	p.Q198*	ENST00000264010	NM_006565.3	198	Cag/Tag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948818	17948818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	171	514	0	ENST00000458235.1:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000458235	NM_000215.3	542	Gag/Cag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435933	56435934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0012606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	149	287	0	ENST00000407977.2:c.1202_1203dup	p.Gln402SerfsTer18	p.Q402Sfs*18	ENST00000407977		401	-/AG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974765	21974788	+	inframe_deletion	In_Frame_Del	DEL	GCCGCGGCCGTGGCCAGCCAGTCA	GCCGCGGCCGTGGCCAGCCAGTCA	-			P-0012606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	147	242	0	ENST00000304494.5:c.39_62del	p.Asp14_Ala21del	p.D14_A21del	ENST00000304494	NM_000077.4	13	gcTGACTGGCTGGCCACGGCCGCGGCc/gcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974765	21974788	+	inframe_deletion	In_Frame_Del	DEL	GCCGCGGCCGTGGCCAGCCAGTCA	GCCGCGGCCGTGGCCAGCCAGTCA	-			P-0012606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	147	242	0	ENST00000304494.5:c.39_62del	p.Asp14_Ala21del	p.D14_A21del	ENST00000304494	NM_000077.4	13	gcTGACTGGCTGGCCACGGCCGCGGCc/gcc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441242	52441243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	167	500	0	ENST00000460680.1:c.527dup	p.Thr177HisfsTer6	p.T177Hfs*6	ENST00000460680	NM_004656.3	176	atc/atTc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	54	421	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366650	40366650	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	15	534	0	ENST00000397332.2:c.547A>C	p.Thr183Pro	p.T183P	ENST00000397332	NM_001033082.2	183	Acc/Ccc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436827	52436827	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	87	756	1	ENST00000460680.1:c.1951A>T	p.Lys651Ter	p.K651*	ENST00000460680	NM_004656.3	651	Aag/Tag																																																																														
AXIN1	8312	MSKCC	GRCh37	16	339555	339555	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	42	744	0	ENST00000262320.3:c.2347A>G	p.Ile783Val	p.I783V	ENST00000262320	NM_003502.3	783	Atc/Gtc																																																																														
ATM	472	MSKCC	GRCh37	11	108160433	108160433	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	21	444	1	ENST00000278616.4:c.4343del	p.Leu1448TyrfsTer3	p.L1448Yfs*3	ENST00000278616	NM_000051.3	1447	agT/ag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30648403	30648403	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	121	449	0	ENST00000359013.4:c.28T>G	p.Trp10Gly	p.W10G	ENST00000359013	NM_001024847.2	10	Tgg/Ggg																																																																														
KDR	3791	MSKCC	GRCh37	4	55964336	55964336	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	199	717	2	ENST00000263923.4:c.2477A>G	p.Lys826Arg	p.K826R	ENST00000263923	NM_002253.2	826	aAa/aGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878685	151878685	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	133	376	2	ENST00000262189.6:c.6260A>T	p.His2087Leu	p.H2087L	ENST00000262189	NM_170606.2	2087	cAt/cTt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39661101	39661101	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0012644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	166	482	0	ENST00000262039.4:c.2664A>G	p.Ter888TrpextTer4	p.*888Wext*4	ENST00000262039	NM_002647.2	888	tgA/tgG																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441976	52441976	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0012666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	228	432	2	ENST00000460680.1:c.373G>T	p.Glu125Ter	p.E125*	ENST00000460680	NM_004656.3	125	Gag/Tag																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564102	139564102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	56	569	1	ENST00000308874.7:c.242C>T	p.Pro81Leu	p.P81L	ENST00000308874		81	cCt/cTt																																																																														
ATM	472	MSKCC	GRCh37	11	108235872	108235872	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	192	498	0	ENST00000278616.4:c.8914C>T	p.Gln2972Ter	p.Q2972*	ENST00000278616	NM_000051.3	2972	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	295	531	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11194514	11194514	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	282	496	0	ENST00000361445.4:c.5140T>G	p.Phe1714Val	p.F1714V	ENST00000361445	NM_004958.3	1714	Ttc/Gtc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181605	32181605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	307	660	0	ENST00000375023.3:c.2180G>A	p.Ser727Asn	p.S727N	ENST00000375023	NM_004557.3	727	aGt/aAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982016	93982016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0012867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	113	544	0	ENST00000369303.4:c.1449A>C	p.Lys483Asn	p.K483N	ENST00000369303	NM_004440.3	483	aaA/aaC																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120657	115120657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	419	886	0	ENST00000257566.3:c.349C>T	p.His117Tyr	p.H117Y	ENST00000257566	NM_016569.3	117	Cac/Tac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53254060	53254060	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	306	313	0	ENST00000375401.3:c.12del	p.Ser5ProfsTer68	p.S5Pfs*68	ENST00000375401	NM_004187.3	4	ggG/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	39	501	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	172	595	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748146	72748146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	213	708	1	ENST00000357731.5:c.32G>A	p.Cys11Tyr	p.C11Y	ENST00000357731	NM_173808.2	11	tGt/tAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591923	48591925	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0013152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	52	571	0	ENST00000342988.3:c.1088_1090del	p.Cys363del	p.C363del	ENST00000342988	NM_005359.5	362	ttTTGt/ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577571	7577571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	29	449	0	ENST00000269305.4:c.710T>A	p.Met237Lys	p.M237K	ENST00000269305	NM_001126112.2	237	aTg/aAg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687142	37687142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	357	592	0	ENST00000447079.4:c.4046G>A	p.Ser1349Asn	p.S1349N	ENST00000447079	NM_015083.1	1349	aGt/aAt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441991	52441993	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0013405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	264	521	2	ENST00000460680.1:c.356_358del	p.Thr119del	p.T119del	ENST00000460680	NM_004656.3	119	aCCAag/aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	53	331	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	1826	538	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46215271	46215271	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	77	326	0	ENST00000334344.6:c.705+1G>T		p.X235_splice	ENST00000334344	NM_152641.2	235																																																																															
CIC	23152	MSKCC	GRCh37	19	42791695	42791695	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0013713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	39	346	0	ENST00000575354.2:c.583-2A>T		p.X195_splice	ENST00000575354	NM_015125.3	195																																																																															
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	176	519	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153259012	153259013	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	273	714	0	ENST00000281708.4:c.802_803delAT	p.Met268AspfsTer18	p.M268Dfs*18	ENST00000281708	NM_033632.3	268	ATg/g																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	205	581	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
HGF	3082	MSKCC	GRCh37	7	81355283	81355283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	332	761	0	ENST00000222390.5:c.1091G>T	p.Trp364Leu	p.W364L	ENST00000222390	NM_000601.4	364	tGg/tTg																																																																														
CASP8	841	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	282	720	0	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435549	56435549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	250	712	0	ENST00000407977.2:c.1588C>T	p.Pro530Ser	p.P530S	ENST00000407977		530	Cct/Tct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	154	423	1	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420184	49420184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	259	579	1	ENST00000301067.7:c.15565G>A	p.Gly5189Arg	p.G5189R	ENST00000301067	NM_003482.3	5189	Gga/Aga																																																																														
CIC	23152	MSKCC	GRCh37	19	42792016	42792016	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	465	700	0	ENST00000575354.2:c.820C>T	p.Arg274Ter	p.R274*	ENST00000575354	NM_015125.3	274	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106731	27106732	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGAGACTGGTCT			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	194	655	0	ENST00000324856.7:c.6343_6355dup	p.Leu2119SerfsTer35	p.L2119Sfs*35	ENST00000324856	NM_006015.4	2114	-/CAGAGACTGGTCT																																																																														
PGR	5241	MSKCC	GRCh37	11	100998835	100998835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	306	815	0	ENST00000325455.5:c.967C>A	p.Leu323Met	p.L323M	ENST00000325455	NM_001202474.3	323	Ctg/Atg																																																																														
CCND2	894	MSKCC	GRCh37	12	4385256	4385256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	250	710	0	ENST00000261254.3:c.281C>T	p.Pro94Leu	p.P94L	ENST00000261254	NM_001759.3	94	cCg/cTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478789	56478789	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	261	665	0	ENST00000267101.3:c.245A>T	p.Glu82Val	p.E82V	ENST00000267101	NM_001982.3	82	gAa/gTa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888294	112888294	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	80	524	0	ENST00000351677.2:c.310T>C	p.Cys104Arg	p.C104R	ENST00000351677	NM_002834.3	104	Tgt/Cgt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2221345	2221347	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	251	724	0	ENST00000326181.6:c.432_434del	p.Thr145del	p.T145del	ENST00000326181	NM_032271.2	143	atCACc/atc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778798	3778798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	222	552	0	ENST00000262367.5:c.6250C>A	p.Gln2084Lys	p.Q2084K	ENST00000262367	NM_004380.2	2084	Cag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347108	89347108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	285	857	0	ENST00000301030.4:c.5842G>A	p.Val1948Ile	p.V1948I	ENST00000301030	NM_001256183.1	1948	Gtt/Att																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347432	89347432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144003224		P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	340	952	2	ENST00000301030.4:c.5518G>A	p.Ala1840Thr	p.A1840T	ENST00000301030	NM_001256183.1	1840	Gcg/Acg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291921	15291921	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	43	696	0	ENST00000263388.2:c.2845C>A	p.Leu949Met	p.L949M	ENST00000263388	NM_000435.2	949	Ctg/Atg																																																																														
CD79A	973	MSKCC	GRCh37	19	42384745	42384745	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	575	858	0	ENST00000221972.3:c.507G>A	p.Trp169Ter	p.W169*	ENST00000221972	NM_021601.3	169	tgG/tgA																																																																														
ALK	238	MSKCC	GRCh37	2	29432703	29432703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	263	754	1	ENST00000389048.3:c.3785C>A	p.Pro1262His	p.P1262H	ENST00000389048	NM_004304.4	1262	cCt/cAt																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634713	158634713	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	344	1015	0	ENST00000263640.3:c.473A>G	p.Asn158Ser	p.N158S	ENST00000263640	NM_001105.4	158	aAt/aGt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806572	1806572	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	193	564	0	ENST00000260795.2:c.1288T>C	p.Ser430Pro	p.S430P	ENST00000260795		430	Tcc/Ccc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509954	187509954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	253	649	1	ENST00000441802.2:c.13559C>T	p.Pro4520Leu	p.P4520L	ENST00000441802	NM_005245.3	4520	cCg/cTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187558038	187558039	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	201	441	0	ENST00000441802.2:c.3672dupC	p.Lys1225GlnfsTer13	p.K1225Qfs*13	ENST00000441802	NM_005245.3	1224	-/C																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519508	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	206	599	0	ENST00000367739.4:c.1130_1133del	p.Glu377ValfsTer5	p.E377Vfs*5	ENST00000367739	NM_000416.2	377	gAGAGt/gt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845609	151845609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	240	607	0	ENST00000262189.6:c.13403C>T	p.Thr4468Met	p.T4468M	ENST00000262189	NM_170606.2	4468	aCg/aTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054856	5054857	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	248	545	0	ENST00000381652.3:c.909_910del	p.His303GlnfsTer4	p.H303Qfs*4	ENST00000381652	NM_004972.3	303	cAT/c																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393401	139393401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	238	677	0	ENST00000277541.6:c.6130G>A	p.Ala2044Thr	p.A2044T	ENST00000277541	NM_017617.3	2044	Gca/Aca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	39	289	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0014238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	35	486	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484595	57484595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	32	371	0	ENST00000371085.3:c.679C>G	p.Gln227Glu	p.Q227E	ENST00000371085	NM_000516.4	227	Cag/Gag																																																																														
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0014432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	76	781	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257312	16257315	+	frameshift_variant	Frame_Shift_Del	DEL	TTGC	TTGC	-			P-0014432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	62	848	0	ENST00000375759.3:c.4579_4582delGCTT	p.Ala1527LeufsTer19	p.A1527Lfs*19	ENST00000375759	NM_015001.2	1526	tTTGCt/tt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105966	27105979	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGAGCAAGACAG	CGAGAGCAAGACAG	-			P-0014432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	55	588	0	ENST00000324856.7:c.5577_5590delCGAGAGCAAGACAG	p.Phe1859LeufsTer37	p.F1859Lfs*37	ENST00000324856	NM_006015.4	1859	ttCGAGAGCAAGACAGag/ttag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0014762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	27	344	1	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437302	52437302	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	26	493	0	ENST00000460680.1:c.1742del	p.Gly581ValfsTer36	p.G581Vfs*36	ENST00000460680	NM_004656.3	581	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	83	487	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																														
TET1	80312	MSKCC	GRCh37	10	70450943	70450943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	64	502	0	ENST00000373644.4:c.5783C>T	p.Thr1928Ile	p.T1928I	ENST00000373644	NM_030625.2	1928	aCt/aTt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273787	18273787	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	60	536	0	ENST00000222254.8:c.1120A>T	p.Asn374Tyr	p.N374Y	ENST00000222254	NM_005027.3	374	Aac/Tac																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855831	45855831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	64	672	3	ENST00000391945.4:c.1979C>T	p.Ala660Val	p.A660V	ENST00000391945	NM_000400.3	660	gCg/gTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483991	212483991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	40	379	0	ENST00000342788.4:c.2212G>A	p.Val738Ile	p.V738I	ENST00000342788	NM_005235.2	738	Gta/Ata																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252952	36252952	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	54	440	0	ENST00000300305.3:c.410A>C	p.Asp137Ala	p.D137A	ENST00000300305		137	gAt/gCt																																																																														
MITF	4286	MSKCC	GRCh37	3	70014074	70014074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	66	535	0	ENST00000352241.4:c.1238A>G	p.Asn413Ser	p.N413S	ENST00000352241	NM_198159.2	413	aAt/aGt																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799636	72799636	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	51	489	0	ENST00000325599.8:c.1533A>C	p.Arg511Ser	p.R511S	ENST00000325599	NM_018130.2	511	agA/agC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	46	449	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	45	487	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715660	30715660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	30	227	0	ENST00000359013.4:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000359013	NM_001024847.2	465	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	213	547	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593395	48593395	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	34	338	0	ENST00000342988.3:c.1146del	p.His382GlnfsTer2	p.H382Qfs*2	ENST00000342988	NM_005359.5	382	caC/ca																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	76	296	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193117054	193117054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	151	431	1	ENST00000367435.3:c.787C>A	p.Arg263Ser	p.R263S	ENST00000367435	NM_024529.4	263	Cgt/Agt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448359	49448359	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	107	645	0	ENST00000301067.7:c.352A>T	p.Ile118Phe	p.I118F	ENST00000301067	NM_003482.3	118	Att/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0015738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	136	1988	1	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89712017	89712017	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	39	731	0	ENST00000371953.3:c.634+1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
ALK	238	MSKCC	GRCh37	2	30143495	30143495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	55	922	0	ENST00000389048.3:c.31C>T	p.Pro11Ser	p.P11S	ENST00000389048	NM_004304.4	11	Ccg/Tcg																																																																														
ABL1	25	MSKCC	GRCh37	9	133755539	133755539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	111	1856	0	ENST00000318560.5:c.1508C>T	p.Ser503Leu	p.S503L	ENST00000318560	NM_005157.4	503	tCa/tTa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031885	26031885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	66	194	0	ENST00000244661.2:c.404G>C	p.Arg135Thr	p.R135T	ENST00000244661	NM_003537.3	135	aGa/aCa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097641	27097641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	225	756	1	ENST00000324856.7:c.3230C>A	p.Ala1077Glu	p.A1077E	ENST00000324856	NM_006015.4	1077	gCa/gAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123836	46123837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	113	320	0	ENST00000334344.6:c.109dupA	p.Ile37AsnfsTer29	p.I37Nfs*29	ENST00000334344	NM_152641.2	34	-/A																																																																														
RB1	5925	MSKCC	GRCh37	13	48878053	48878053	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	72	334	0	ENST00000267163.4:c.5C>G	p.Pro2Arg	p.P2R	ENST00000267163	NM_000321.2	2	cCg/cGg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573545	48573545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	81	355	0	ENST00000342988.3:c.129G>T	p.Leu43Phe	p.L43F	ENST00000342988	NM_005359.5	43	ttG/ttT																																																																														
MALT1	10892	MSKCC	GRCh37	18	56363625	56363625	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	76	396	0	ENST00000348428.3:c.404C>A	p.Ser135Ter	p.S135*	ENST00000348428	NM_006785.3	135	tCa/tAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5050791	5050791	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	169	649	0	ENST00000381652.3:c.574G>T	p.Glu192Ter	p.E192*	ENST00000381652	NM_004972.3	192	Gaa/Taa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411493	63411493	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	176	831	0	ENST00000330258.3:c.1674A>C	p.Glu558Asp	p.E558D	ENST00000330258	NM_152424.3	558	gaA/gaC																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	26	179	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698121	47698121	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	53	405	0	ENST00000233146.2:c.1679A>G	p.Asn560Ser	p.N560S	ENST00000233146	NM_000251.2	560	aAt/aGt																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911081	29911082	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0017268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	163	591	0	ENST00000376809.5:c.383_384dup	p.Ser129GlyfsTer23	p.S129Gfs*23	ENST00000376809	NM_002116.7	127	gtg/gtGGg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0017696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	209	720	1	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	339	711	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0017696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	143	577	2				ENST00000310581	NM_198253.2																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11123789	11123789	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	121	336	0	ENST00000344626.4:c.2438+1G>A		p.X813_splice	ENST00000344626	NM_003072.3	813																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	148	493	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	148	493	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	148	493	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250512	110250512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	135	451	0	ENST00000374672.4:c.163C>A	p.Pro55Thr	p.P55T	ENST00000374672	NM_004235.4	55	Ccc/Acc																																																																														
ATM	472	MSKCC	GRCh37	11	108165783	108165783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	84	489	0	ENST00000278616.4:c.4906C>T	p.Gln1636Ter	p.Q1636*	ENST00000278616	NM_000051.3	1636	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108188140	108188140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	73	590	0	ENST00000278616.4:c.6239A>G	p.Tyr2080Cys	p.Y2080C	ENST00000278616	NM_000051.3	2080	tAt/tGt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588858	52588859	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	132	745	0	ENST00000394830.3:c.4169dup	p.Leu1390PhefsTer6	p.L1390Ffs*6	ENST00000394830	NM_018313.4	1390	ttg/ttTg																																																																														
PARK2	5071	MSKCC	GRCh37	6	162206915	162206915	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	89	529	0	ENST00000366898.1:c.760A>G	p.Asn254Asp	p.N254D	ENST00000366898	NM_004562.2	254	Aac/Gac																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983151	201983324	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGAGCTGGCGGCCAGGACCCTCACGATACAGCCGGACATGGGGACAGGCGCTCACACTCCCACCGCCCTCTTTCTGGCTGCCACTTGGCTTCTTGCAACAGGGCTGAGTCCTTAGAGTGAGGACAACATCTGGGTTGGTCTACTTCATGGATTAAATGACAACATGGAGAA	AGGTGAGCTGGCGGCCAGGACCCTCACGATACAGCCGGACATGGGGACAGGCGCTCACACTCCCACCGCCCTCTTTCTGGCTGCCACTTGGCTTCTTGCAACAGGGCTGAGTCCTTAGAGTGAGGACAACATCTGGGTTGGTCTACTTCATGGATTAAATGACAACATGGAGAA	-			P-0018375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	58	861	0	ENST00000359651.3:c.1001+1_1001+174delGTGAGCTGGCGGCCAGGACCCTCACGATACAGCCGGACATGGGGACAGGCGCTCACACTCCCACCGCCCTCTTTCTGGCTGCCACTTGGCTTCTTGCAACAGGGCTGAGTCCTTAGAGTGAGGACAACATCTGGGTTGGTCTACTTCATGGATTAAATGACAACATGGAGAAAG		p.X334_splice	ENST00000359651		334																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228980	36228980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	70	928	0	ENST00000222270.7:c.7760G>A	p.Arg2587Gln	p.R2587Q	ENST00000222270	NM_014727.1	2587	cGa/cAa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135785929	135786379	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAGGGATAGCAGACGAGCTGGATCGCACCTTCCTGGGGGGTGTGACTGTGGCCTGGGGGAGTGAAATGTGCACGTAGTCATCCGAATGACAGAGTGGGGCTGGAGGAGGAGAGGTTGCTGGGGTTCCCAGAGGAGTTCCTTTTCCACCTGCTTAGAGACAAGGGCAGAACATATATGAACACTGAGCCCAACTATTAGAAAAACTGCCGATTTTTTTTCAGCCTATAACTATTACTATAAATAAAGCTGCTAGAGTTAACTTTCTGGGGATCTAGATCAGTCTCTCTCTTTTTTGTTTTTAGGTTCACTTTACACATTCTGAAAGCCCCAGGGATTTGCAATAAGTGTCAAAAACAAGTTTACAACAGCAAGTGGTCCCTTAGATCTAAAAGAGAGCTCCTCCTGCCATTAAAGGCAGGCCAAAACCAACTAATCAAATCCAACCTAAGA	AGAGGGATAGCAGACGAGCTGGATCGCACCTTCCTGGGGGGTGTGACTGTGGCCTGGGGGAGTGAAATGTGCACGTAGTCATCCGAATGACAGAGTGGGGCTGGAGGAGGAGAGGTTGCTGGGGTTCCCAGAGGAGTTCCTTTTCCACCTGCTTAGAGACAAGGGCAGAACATATATGAACACTGAGCCCAACTATTAGAAAAACTGCCGATTTTTTTTCAGCCTATAACTATTACTATAAATAAAGCTGCTAGAGTTAACTTTCTGGGGATCTAGATCAGTCTCTCTCTTTTTTGTTTTTAGGTTCACTTTACACATTCTGAAAGCCCCAGGGATTTGCAATAAGTGTCAAAAACAAGTTTACAACAGCAAGTGGTCCCTTAGATCTAAAAGAGAGCTCCTCCTGCCATTAAAGGCAGGCCAAAACCAACTAATCAAATCCAACCTAAGA	-			P-0018375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	30	721	0	ENST00000298552.3:c.1141+10_1263+29delTCTTAGGTTGGATTTGATTAGTTGGTTTTGGCCTGCCTTTAATGGCAGGAGGAGCTCTCTTTTAGATCTAAGGGACCACTTGCTGTTGTAAACTTGTTTTTGACACTTATTGCAAATCCCTGGGGCTTTCAGAATGTGTAAAGTGAACCTAAAAACAAAAAAGAGAGAGACTGATCTAGATCCCCAGAAAGTTAACTCTAGCAGCTTTATTTATAGTAATAGTTATAGGCTGAAAAAAAATCGGCAGTTTTTCTAATAGTTGGGCTCAGTGTTCATATATGTTCTGCCCTTGTCTCTAAGCAGGTGGAAAAGGAACTCCTCTGGGAACCCCAGCAACCTCTCCTCCTCCAGCCCCACTCTGTCATTCGGATGACTACGTGCACATTTCACTCCCCCAGGCCACAGTCACACCCCCCAGGAAGGTGCGATCCAGCTCGTCTGCTATCCCTCT		p.X381_splice	ENST00000298552	NM_001162426.1	381																																																																															
TSC1	7248	MSKCC	GRCh37	9	135786465	135786465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	50	956	1	ENST00000298552.3:c.1065G>A	p.Met355Ile	p.M355I	ENST00000298552	NM_001162426.1	355	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	264	474	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	108	243	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
NF2	4771	MSKCC	GRCh37	22	30067824	30067824	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	63	238	0	ENST00000338641.4:c.1009C>T	p.Gln337Ter	p.Q337*	ENST00000338641	NM_000268.3	337	Cag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211118	36211118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200835025		P-0018420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	88	545	0	ENST00000222270.7:c.869G>A	p.Arg290His	p.R290H	ENST00000222270	NM_014727.1	290	cGt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223338	36223338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146177906		P-0018420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	67	603	1	ENST00000222270.7:c.5888C>T	p.Pro1963Leu	p.P1963L	ENST00000222270	NM_014727.1	1963	cCg/cTg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560910	9560910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	57	323	0	ENST00000353224.5:c.872G>A	p.Gly291Glu	p.G291E	ENST00000353224	NM_177990.2	291	gGa/gAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538326	187538326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	130	402	0	ENST00000441802.2:c.8908G>A	p.Glu2970Lys	p.E2970K	ENST00000441802	NM_005245.3	2970	Gaa/Aaa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442542	52442542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	101	940	0	ENST00000460680.1:c.203A>G	p.Asp68Gly	p.D68G	ENST00000460680	NM_004656.3	68	gAt/gGt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867469	35867469	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191585195		P-0019194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	53	778	1	ENST00000303115.3:c.283G>A	p.Glu95Lys	p.E95K	ENST00000303115	NM_002185.3	95	Gag/Aag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984385	201984385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	144	1259	1	ENST00000359651.3:c.1050del	p.Val351SerfsTer96	p.V351Sfs*96	ENST00000359651		350	ctC/ct																																																																														
XPO1	7514	MSKCC	GRCh37	2	61720104	61720104	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	46	1128	0	ENST00000401558.2:c.1330T>C	p.Phe444Leu	p.F444L	ENST00000401558	NM_003400.3	444	Ttc/Ctc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670750	134670750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	27	746	0	ENST00000398015.3:c.661G>A	p.Ala221Thr	p.A221T	ENST00000398015	NM_004441.4	221	Gct/Act																																																																														
JUN	3725	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0019382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	283	1135	0	ENST00000371222.2:c.109_110delAG	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																														
RASA1	5921	MSKCC	GRCh37	5	86676412	86676412	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	83	355	0	ENST00000274376.6:c.2690G>A	p.Ser897Asn	p.S897N	ENST00000274376	NM_002890.2	897	aGt/aAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	232	970	3	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189585638	189585638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	233	820	6	ENST00000264731.3:c.899C>T	p.Thr300Met	p.T300M	ENST00000264731	NM_003722.4	300	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112157614	112157615	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	141	907	0	ENST00000257430.4:c.1335dup	p.Ile446AspfsTer14	p.I446Dfs*14	ENST00000257430	NM_000038.5	445	cag/caGg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131940684	131940689	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AGATAA	AGATAA	-			P-0020128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	126	762	0	ENST00000265335.6:c.2713_2718del	p.Ile905_Lys906del	p.I905_K906del	ENST00000265335		904	gAGATAAag/gag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442567	52442567	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	533	728	0	ENST00000460680.1:c.178C>T	p.Arg60Ter	p.R60*	ENST00000460680	NM_004656.3	60	Cga/Tga																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076751	72076751	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	76	746	0	ENST00000357731.5:c.746G>C	p.Gly249Ala	p.G249A	ENST00000357731	NM_173808.2	249	gGt/gCt																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645693	12645698	+	inframe_deletion	In_Frame_Del	DEL	GATGTC	GATGTC	-			P-0020726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	26	357	0	ENST00000251849.4:c.771_776del	p.Ser259_Thr260del	p.S259_T260del	ENST00000251849	NM_002880.3	257	tcGACATCc/tcc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52696148	52696148	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	19	784	1	ENST00000394830.3:c.528+1G>T		p.X176_splice	ENST00000394830	NM_018313.4	176																																																																															
BAP1	8314	MSKCC	GRCh37	3	52441246	52441246	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	235	674	0	ENST00000460680.1:c.524C>G	p.Pro175Arg	p.P175R	ENST00000460680	NM_004656.3	175	cCt/cGt																																																																														
FYN	2534	MSKCC	GRCh37	6	112041085	112041085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	41	589	0	ENST00000368678.4:c.170G>A	p.Gly57Glu	p.G57E	ENST00000368678		57	gGg/gAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622195	117622195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	75	684	2	ENST00000368508.3:c.6675C>A	p.Ser2225Arg	p.S2225R	ENST00000368508	NM_002944.2	2225	agC/agA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	17	819	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256369	46256369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	141	678	0	ENST00000371998.3:c.597G>A	p.Met199Ile	p.M199I	ENST00000371998		199	atG/atA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974913	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	GCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCA	GCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCA	-			P-0021752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	100	375	0	ENST00000304494.5:c.-87_50delTGGCTGGTCACCAGAGGGTGGGGCGGACCGCGTGCGCTCGGCGGCTGCGGAGAGGGGGAGAGCAGGCAGCGGGCGGCGGGGAGCAGCATGGAGCCGGCGGCGGGGAGCAGCATGGAGCCTTCGGCTGACTGGCTGGC		p.*29fs*	ENST00000304494	NM_000077.4																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974913	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	GCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCA	GCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCA	-			P-0021752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	100	375	0	ENST00000304494.5:c.-87_50delTGGCTGGTCACCAGAGGGTGGGGCGGACCGCGTGCGCTCGGCGGCTGCGGAGAGGGGGAGAGCAGGCAGCGGGCGGCGGGGAGCAGCATGGAGCCGGCGGCGGGGAGCAGCATGGAGCCTTCGGCTGACTGGCTGGC		p.*29fs*	ENST00000304494	NM_000077.4																																																																																
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	97	284	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165910	118165910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	144	388	0	ENST00000369448.3:c.420G>T	p.Gln140His	p.Q140H	ENST00000369448	NM_017709.3	140	caG/caT																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436657	52436673	+	frameshift_variant	Frame_Shift_Del	DEL	CATCGTAGTTGTGGGTC	CATCGTAGTTGTGGGTC	-			P-0022253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	140	657	0	ENST00000460680.1:c.2001_2017del	p.Thr668ValfsTer43	p.T668Vfs*43	ENST00000460680	NM_004656.3	667	agGACCCACAACTACGATGag/agag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	29	376	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	40	604	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	44	782	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0022701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	27	796	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	46	762	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	71	675	1	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
ATM	472	MSKCC	GRCh37	11	108165786	108165786	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	55	419	0	ENST00000278616.4:c.4909G>T	p.Asp1637Tyr	p.D1637Y	ENST00000278616	NM_000051.3	1637	Gat/Tat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390994	89390994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	84	586	1	ENST00000336596.2:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000336596	NM_005233.5	354	Cgg/Tgg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663299	227663301	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0023593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	86	534	0	ENST00000305123.5:c.154_156delAAG	p.Lys52del	p.K52del	ENST00000305123	NM_005544.2	52	AAG/-																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	73	850	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745518	162745518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	47	597	0	ENST00000367921.3:c.1933A>G	p.Ile645Val	p.I645V	ENST00000367921	NM_006182.2	645	Atc/Gtc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880947	134880947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	113	630	0	ENST00000398015.3:c.1510G>C	p.Val504Leu	p.V504L	ENST00000398015	NM_004441.4	504	Gta/Cta																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	81	394	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	57	313	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505396	157505399	+	frameshift_variant	Frame_Shift_Del	DEL	CAAC	CAAC	-			P-0023826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	32	200	0	ENST00000346085.5:c.3382_3385del	p.Asn1128Ter	p.N1128*	ENST00000346085	NM_020732.3	1126	gCAACc/gc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101712	27101712	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0024320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	118	801	0	ENST00000324856.7:c.4993+1G>A		p.X1665_splice	ENST00000324856	NM_006015.4	1665																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88679187	88679187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	82	267	0	ENST00000372037.3:c.1127G>A	p.Cys376Tyr	p.C376Y	ENST00000372037	NM_004329.2	376	tGc/tAc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923646	131923646	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	49	410	0	ENST00000265335.6:c.916G>C	p.Asp306His	p.D306H	ENST00000265335		306	Gac/Cac																																																																														
MET	4233	MSKCC	GRCh37	7	116411926	116412083	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAACTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTTCCAGAAGGTATATTTCAGTTTATTGTTCTGAGAAATACCTATACATA	TACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAACTACAGAAATGGTTTCAAATGAATCTGTAGACTACCGAGCTACTTTTCCAGAAGGTATATTTCAGTTTATTGTTCTGAGAAATACCTATACATA	-			P-0024320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	110	884	0	ENST00000397752.3:c.2914_3028+43del		p.X972_splice	ENST00000397752	NM_000245.2	972																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	352	600	1	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376688	31376688	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	69	332	0	ENST00000328111.2:c.683T>G	p.Leu228Arg	p.L228R	ENST00000328111	NM_006892.3	228	cTc/cGc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	200	418	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087393	27087394	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	364	570	0	ENST00000324856.7:c.1969_1970del	p.Leu657GlufsTer18	p.L657Efs*18	ENST00000324856	NM_006015.4	656	gCT/g																																																																														
PARP1	142	MSKCC	GRCh37	1	226567718	226567719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	255	447	0	ENST00000366794.5:c.1447dup	p.Ala483GlyfsTer9	p.A483Gfs*9	ENST00000366794	NM_001618.3	483	gca/gGca																																																																														
NUF2	83540	MSKCC	GRCh37	1	163309259	163309260	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	79	437	1	ENST00000271452.3:c.604dup	p.Thr202AsnfsTer24	p.T202Nfs*24	ENST00000271452	NM_145697.2	200	caa/cAaa																																																																														
PARP1	142	MSKCC	GRCh37	1	226567710	226567718	+	missense_variant	Missense_Mutation	ONP	TCACCTCTG	TCACCTCTG	CACCTCTGC			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	255	452	1	ENST00000366794.5:c.1448_1456delinsGCAGAGGTG	p.Ala483_Lys486delinsGlyArgGlyGlu	p.A483_K486delinsGRGE	ENST00000366794	NM_001618.3	483	gCAGAGGTGAag/gGCAGAGGTGag																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625086	69625086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	220	404	0	ENST00000334134.2:c.707C>T	p.Ala236Val	p.A236V	ENST00000334134	NM_005247.2	236	gCc/gTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623593	28623593	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	319	540	0	ENST00000241453.7:c.964A>G	p.Arg322Gly	p.R322G	ENST00000241453	NM_004119.2	322	Aga/Gga																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434674	99434674	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	332	606	0	ENST00000268035.6:c.761A>G	p.Tyr254Cys	p.Y254C	ENST00000268035	NM_000875.3	254	tAc/tGc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5273515	5273515	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1222	95	680	0	ENST00000357368.4:c.317A>G	p.Glu106Gly	p.E106G	ENST00000357368	NM_002850.3	106	gAg/gGg																																																																														
INSR	3643	MSKCC	GRCh37	19	7184349	7184349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	351	634	0	ENST00000302850.5:c.952G>A	p.Gly318Arg	p.G318R	ENST00000302850	NM_000208.2	318	Ggg/Agg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99154357	99154357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	234	416	0	ENST00000074304.5:c.499A>G	p.Thr167Ala	p.T167A	ENST00000074304	NM_001134224.1	167	Acc/Gcc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158637067	158637068	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	313	536	1	ENST00000263640.3:c.111_112dupTG	p.Glu38ValfsTer21	p.E38Vfs*21	ENST00000263640	NM_001105.4	38	gaa/gTGaa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437564	52437565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	305	536	0	ENST00000460680.1:c.1596dup	p.Gly533TrpfsTer4	p.G533Wfs*4	ENST00000460680	NM_004656.3	532	-/T																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31449399	31449399	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	268	499	0	ENST00000344624.3:c.2810T>C	p.Met937Thr	p.M937T	ENST00000344624		937	aTg/aCg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715455	117715455	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	283	432	0	ENST00000368508.3:c.1034T>C	p.Ile345Thr	p.I345T	ENST00000368508	NM_002944.2	345	aTa/aCa																																																																														
MET	4233	MSKCC	GRCh37	7	116412523	116412523	+	intron_variant	Intron	DEL	T	T	-			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	543	871	0	ENST00000397752.3:c.3028+483del		p.*1010*	ENST00000397752	NM_000245.2																																																																																
NTRK2	4915	MSKCC	GRCh37	9	87635176	87635176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	243	426	0	ENST00000277120.3:c.2228A>G	p.Tyr743Cys	p.Y743C	ENST00000277120		743	tAc/tGc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	117	225	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73108193	73108193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	35	69	0	ENST00000356692.5:c.293C>T	p.Pro98Leu	p.P98L	ENST00000356692		98	cCt/cTt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	79	288	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610715	52610715	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0024727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	96	320	0	ENST00000394830.3:c.3459-1G>T		p.X1153_splice	ENST00000394830	NM_018313.4	1153																																																																															
PARP1	142	MSKCC	GRCh37	1	226578163	226578163	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs143482147		P-0024727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	51	462	0	ENST00000366794.5:c.565A>G	p.Thr189Ala	p.T189A	ENST00000366794	NM_001618.3	189	Aca/Gca																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	105	479	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	98	367	1	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	266	483	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	165	451	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	126	392	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348846	11348846	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	28	70	0	ENST00000332029.2:c.490del	p.Ala164ProfsTer41	p.A164Pfs*41	ENST00000332029	NM_003745.1	164	Gcc/cc																																																																														
POLE	5426	MSKCC	GRCh37	12	133202313	133202313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	107	484	1	ENST00000320574.5:c.6575C>T	p.Ala2192Val	p.A2192V	ENST00000320574	NM_006231.2	2192	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	103	298	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	103	384	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	107	317	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	41	538	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
PARP1	142	MSKCC	GRCh37	1	226573330	226573330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	38	362	0	ENST00000366794.5:c.886G>A	p.Glu296Lys	p.E296K	ENST00000366794	NM_001618.3	296	Gag/Aag																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	109	394	3	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
BCL6	604	MSKCC	GRCh37	3	187446270	187446270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	108	420	0	ENST00000232014.4:c.1418delC	p.Pro473ArgfsTer117	p.P473Rfs*117	ENST00000232014	NM_001130845.1	473	cCg/cg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799278	88799278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	90	422	0	ENST00000360948.2:c.107G>A	p.Cys36Tyr	p.C36Y	ENST00000360948	NM_001012338.2	36	tGt/tAt																																																																														
WT1	7490	MSKCC	GRCh37	11	32456857	32456857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	41	365	0	ENST00000332351.3:c.35C>T	p.Pro12Leu	p.P12L	ENST00000332351	NM_024426.4	12	cCg/cTg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609778	81609778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	39	289	1	ENST00000298171.2:c.1376C>T	p.Ala459Val	p.A459V	ENST00000298171	NM_000369.2	459	gCg/gTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70446360	70446360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	218	424	0	ENST00000373644.4:c.5300C>T	p.Ala1767Val	p.A1767V	ENST00000373644	NM_030625.2	1767	gCa/gTa																																																																														
CASP8	841	MSKCC	GRCh37	2	202137430	202137431	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	96	304	0	ENST00000358485.4:c.660_661delAA	p.Arg221SerfsTer17	p.R221Sfs*17	ENST00000358485	NM_001080125.1	220	AAa/a																																																																														
TET2	54790	MSKCC	GRCh37	4	106193850	106193850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	91	260	0	ENST00000380013.4:c.4317del	p.Lys1439AsnfsTer9	p.K1439Nfs*9	ENST00000380013	NM_001127208.2	1438	Aaa/aa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	24	388	0	ENST00000357368.4:c.3072dupC	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733223	74733223	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	80	296	0	ENST00000359995.5:c.20del	p.Pro7LeufsTer7	p.P7Lfs*7	ENST00000359995	NM_001195427.1	7	cCt/ct																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721099	61721099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	313	519	1	ENST00000401558.2:c.1175C>T	p.Pro392Leu	p.P392L	ENST00000401558	NM_003400.3	392	cCg/cTg																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33430296	33430296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	129	635	0	ENST00000335858.7:c.379C>T	p.Arg127Trp	p.R127W	ENST00000335858	NM_133629.2	127	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087417	27087417	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	173	600	0	ENST00000324856.7:c.1991C>G	p.Ser664Ter	p.S664*	ENST00000324856	NM_006015.4	664	tCa/tGa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120506209	120506209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	71	249	0	ENST00000256646.2:c.1903C>T	p.Pro635Ser	p.P635S	ENST00000256646	NM_024408.3	635	Cca/Tca																																																																														
AKT3	10000	MSKCC	GRCh37	1	243727080	243727080	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	133	511	0	ENST00000263826.5:c.890T>G	p.Ile297Ser	p.I297S	ENST00000263826	NM_005465.4	297	aTc/aGc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123353300	123353300	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	72	568	0	ENST00000358487.5:c.32T>C	p.Val11Ala	p.V11A	ENST00000358487	NM_000141.4	11	gTc/gCc																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61213523	61213523	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	87	365	0	ENST00000301761.2:c.481C>G	p.Leu161Val	p.L161V	ENST00000301761	NM_017841.2	161	Ctc/Gtc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137788	64137788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	194	702	0	ENST00000334205.4:c.1889A>T	p.Glu630Val	p.E630V	ENST00000334205	NM_003942.2	630	gAg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444933	49444933	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	96	357	2	ENST00000301067.7:c.2533del	p.Arg845GlyfsTer85	p.R845Gfs*85	ENST00000301067	NM_003482.3	845	Cgg/gg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008056	29008056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	74	316	0	ENST00000282397.4:c.713G>A	p.Arg238His	p.R238H	ENST00000282397	NM_002019.4	238	cGc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913953	32913953	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	173	481	0	ENST00000380152.3:c.5465del	p.Asn1822IlefsTer18	p.N1822Ifs*18	ENST00000380152		1821	Aaa/aa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914205	32914205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	169	456	1	ENST00000380152.3:c.5713C>T	p.His1905Tyr	p.H1905Y	ENST00000380152		1905	Cat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929162	32929162	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	138	564	0	ENST00000380152.3:c.7177delA	p.Met2393Ter	p.M2393*	ENST00000380152		2391	gAa/ga																																																																														
AKT1	207	MSKCC	GRCh37	14	105236728	105236728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	130	405	0	ENST00000349310.3:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000349310	NM_001014432.1	465	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843468	3843468	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	51	393	0	ENST00000262367.5:c.1135del	p.Ala379ProfsTer10	p.A379Pfs*10	ENST00000262367	NM_004380.2	379	Gcc/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992108	72992108	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	142	379	0	ENST00000268489.5:c.1937A>T	p.Asp646Val	p.D646V	ENST00000268489	NM_006885.3	646	gAc/gTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29556332	29556332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	134	449	0	ENST00000358273.4:c.2699C>A	p.Ser900Tyr	p.S900Y	ENST00000358273	NM_001042492.2	900	tCc/tAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881120	37881120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	152	503	0	ENST00000269571.5:c.2449C>A	p.Leu817Met	p.L817M	ENST00000269571		817	Ctg/Atg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688714	47688714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	86	342	0	ENST00000347630.2:c.586A>G	p.Asn196Asp	p.N196D	ENST00000347630	NM_001007230.1	196	Aat/Gat																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780623	56780623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	147	652	0	ENST00000337432.4:c.638G>A	p.Cys213Tyr	p.C213Y	ENST00000337432	NM_058216.2	213	tGt/tAt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59853809	59853809	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	137	480	0	ENST00000259008.2:c.2050T>C	p.Cys684Arg	p.C684R	ENST00000259008	NM_032043.2	684	Tgc/Cgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220146	5220146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	60	319	0	ENST00000357368.4:c.3569G>A	p.Arg1190Gln	p.R1190Q	ENST00000357368	NM_002850.3	1190	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210743	36210743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	151	485	0	ENST00000222270.7:c.494G>A	p.Arg165His	p.R165H	ENST00000222270	NM_014727.1	165	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211928	36211928	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	181	639	0	ENST00000222270.7:c.1679C>G	p.Ser560Ter	p.S560*	ENST00000222270	NM_014727.1	560	tCa/tGa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219700	36219700	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	153	624	0	ENST00000222270.7:c.4601del	p.Pro1534HisfsTer112	p.P1534Hfs*112	ENST00000222270	NM_014727.1	1533	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229393	36229393	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	86	397	0	ENST00000222270.7:c.8083G>T	p.Glu2695Ter	p.E2695*	ENST00000222270	NM_014727.1	2695	Gag/Tag																																																																														
CIC	23152	MSKCC	GRCh37	19	42795885	42795886	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	290	553	0	ENST00000575354.2:c.2880dup	p.Ser961GlnfsTer190	p.S961Qfs*190	ENST00000575354	NM_015125.3	958	-/C																																																																														
SOS1	6654	MSKCC	GRCh37	2	39285894	39285894	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	168	541	0	ENST00000402219.2:c.265G>C	p.Asp89His	p.D89H	ENST00000402219	NM_005633.3	89	Gat/Cat																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660004	227660004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	104	390	0	ENST00000305123.5:c.3451C>A	p.Leu1151Met	p.L1151M	ENST00000305123	NM_005544.2	1151	Ctg/Atg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022802	31022802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	101	361	1	ENST00000375687.4:c.2287C>A	p.Pro763Thr	p.P763T	ENST00000375687	NM_015338.5	763	Ccc/Acc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57470684	57470684	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	28	303	0	ENST00000371085.3:c.160del	p.Ser54AlafsTer4	p.S54Afs*4	ENST00000371085	NM_000516.4	53	Aaa/aa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62293880	62293880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	143	528	0	ENST00000508582.2:c.449C>T	p.Thr150Met	p.T150M	ENST00000508582		150	aCg/aTg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935550	49935550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	126	471	0	ENST00000296474.3:c.1814G>C	p.Gly605Ala	p.G605A	ENST00000296474	NM_002447.2	605	gGa/gCa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940567	49940567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	32	393	0	ENST00000296474.3:c.476C>T	p.Ala159Val	p.A159V	ENST00000296474	NM_002447.2	159	gCg/gTg																																																																														
ATR	545	MSKCC	GRCh37	3	142242908	142242909	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	166	580	0	ENST00000350721.4:c.4078dup	p.Glu1360GlyfsTer16	p.E1360Gfs*16	ENST00000350721	NM_001184.3	1360	gaa/gGaa																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683390	182683390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	124	520	0	ENST00000292782.4:c.155T>C	p.Ile52Thr	p.I52T	ENST00000292782	NM_020640.2	52	aTa/aCa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1920154	1920155	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	135	512	0	ENST00000382891.5:c.1217_1218del	p.Cys406Ter	p.C406*	ENST00000382891	NM_133335.3	405	cTG/c																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1980410	1980410	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	185	741	0	ENST00000382891.5:c.3872C>G	p.Pro1291Arg	p.P1291R	ENST00000382891	NM_133335.3	1291	cCt/cGt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289008	33289008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	120	436	1	ENST00000374542.5:c.544C>A	p.Arg182Ser	p.R182S	ENST00000374542	NM_001141970.1	182	Cgt/Agt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93973635	93973635	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	96	405	0	ENST00000369303.4:c.1743-2A>G		p.X581_splice	ENST00000369303	NM_004440.3	581																																																																															
LATS1	9113	MSKCC	GRCh37	6	149983299	149983301	+	inframe_deletion	In_Frame_Del	DEL	TAA	TAA	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	64	598	0	ENST00000253339.5:c.2957_2959del	p.Ile986del	p.I986del	ENST00000253339		986	aTTAaa/aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2951857	2951857	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	113	631	0	ENST00000396946.4:c.3093del	p.Asn1032ThrfsTer33	p.N1032Tfs*33	ENST00000396946	NM_032415.4	1031	ccC/cc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035206	6035206	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	131	476	0	ENST00000265849.7:c.862C>T	p.Gln288Ter	p.Q288*	ENST00000265849	NM_000535.5	288	Cag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526583	106526583	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	99	391	0	ENST00000359195.3:c.2876A>G	p.Asn959Ser	p.N959S	ENST00000359195	NM_002649.2	959	aAc/aGc																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38135870	38135870	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	139	499	0	ENST00000317025.8:c.3821A>T	p.His1274Leu	p.H1274L	ENST00000317025	NM_023034.1	1274	cAc/cTc																																																																														
NBN	4683	MSKCC	GRCh37	8	90995009	90995009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	315	503	0	ENST00000265433.3:c.112G>T	p.Asp38Tyr	p.D38Y	ENST00000265433	NM_002485.4	38	Gat/Tat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934006	39934006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	141	418	3	ENST00000378444.4:c.593G>A	p.Gly198Asp	p.G198D	ENST00000378444	NM_001123385.1	198	gGt/gAt																																																																														
ARAF	369	MSKCC	GRCh37	X	47422682	47422682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	100	435	1	ENST00000377045.4:c.154C>T	p.Arg52Trp	p.R52W	ENST00000377045	NM_001654.4	52	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	92	657	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	137	404	1	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643601	52643602	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0025289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	72	467	0	ENST00000394830.3:c.2293_2294dup	p.Asp766GlufsTer10	p.D766Efs*10	ENST00000394830	NM_018313.4	765	gga/ggGGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	74	621	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94163112	94163112	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	73	579	0	ENST00000323929.3:c.2035C>T	p.Gln679Ter	p.Q679*	ENST00000323929	NM_005591.3	679	Caa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47142993	47142993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	49	574	0	ENST00000409792.3:c.4970C>T	p.Pro1657Leu	p.P1657L	ENST00000409792	NM_014159.6	1657	cCt/cTt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738678	145738678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	68	640	1	ENST00000428558.2:c.2386G>A	p.Glu796Lys	p.E796K	ENST00000428558	NM_004260.3	796	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097621	27097622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	46	437	0	ENST00000324856.7:c.3216dup	p.Trp1073MetfsTer32	p.W1073Mfs*32	ENST00000324856	NM_006015.4	1070	-/A																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	71	270	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610555	52610555	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0025488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	72	405	0	ENST00000394830.3:c.3616+2T>G		p.X1206_splice	ENST00000394830	NM_018313.4	1206																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1249	194	462	0	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631837	90631837	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	128	366	0	ENST00000330062.3:c.516G>C	p.Arg172Ser	p.R172S	ENST00000330062	NM_002168.2	172	agG/agC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	65	498	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891349	101891349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	48	547	1	ENST00000374994.4:c.310G>T	p.Asp104Tyr	p.D104Y	ENST00000374994	NM_004612.2	104	Gac/Tac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44919400	44919400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0025978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	33	155	0	ENST00000377967.4:c.1328A>G	p.Gln443Arg	p.Q443R	ENST00000377967	NM_021140.2	443	cAg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578546	7578564	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGGAGTACTGTAGGAAG	AGGGGAGTACTGTAGGAAG	-			P-0025978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	65	836	0	ENST00000269305.4:c.376-10_384del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151845421	151845421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	59	558	0	ENST00000262189.6:c.13591G>A	p.Glu4531Lys	p.E4531K	ENST00000262189	NM_170606.2	4531	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100871	27100871	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	106	444	1	ENST00000324856.7:c.4153G>T	p.Glu1385Ter	p.E1385*	ENST00000324856	NM_006015.4	1385	Gaa/Taa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2107112	2107112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	84	451	0	ENST00000219476.3:c.781C>T	p.Arg261Trp	p.R261W	ENST00000219476	NM_000548.3	261	Cgg/Tgg																																																																														
KIT	3815	MSKCC	GRCh37	4	55598137	55598142	+	inframe_deletion	In_Frame_Del	DEL	GGGCAT	GGGCAT	-			P-0026216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	74	384	0	ENST00000288135.5:c.2336_2341del	p.Gly779_Met780del	p.G779_M780del	ENST00000288135	NM_000222.2	778	aaGGGCATg/aag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245720	46245720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	63	624	2	ENST00000334344.6:c.3814C>T	p.Arg1272Ter	p.R1272*	ENST00000334344	NM_152641.2	1272	Cga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325878	65325878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	73	630	0	ENST00000342505.4:c.1244T>C	p.Leu415Pro	p.L415P	ENST00000342505	NM_002227.2	415	cTc/cCc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223963	2223963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	72	774	0	ENST00000326181.6:c.1177G>C	p.Val393Leu	p.V393L	ENST00000326181	NM_032271.2	393	Gtg/Ctg																																																																														
INSR	3643	MSKCC	GRCh37	19	7170745	7170745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	69	751	0	ENST00000302850.5:c.1286C>T	p.Ala429Val	p.A429V	ENST00000302850	NM_000208.2	429	gCc/gTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29550550	29550575	+	frameshift_variant	Frame_Shift_Del	DEL	TTGATCTGCAGGAATAAATTTCTTCT	TTGATCTGCAGGAATAAATTTCTTCT	A			P-0026408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	49	583	0	ENST00000358273.4:c.1810_1835delinsA	p.Leu604IlefsTer19	p.L604Ifs*19	ENST00000358273	NM_001042492.2	604	TTGATCTGCAGGAATAAATTTCTTCTt/At																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	128	595	1	ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	100	487	0	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411779	63411779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	137	666	0	ENST00000330258.3:c.1388C>T	p.Ser463Phe	p.S463F	ENST00000330258	NM_152424.3	463	tCc/tTc																																																																														
BCL2	596	MSKCC	GRCh37	18	60985757	60985757	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	43	264	0	ENST00000333681.4:c.143T>C	p.Ile48Thr	p.I48T	ENST00000333681		48	aTc/aCc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120491726	120491726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	85	369	0	ENST00000256646.2:c.2503G>T	p.Ala835Ser	p.A835S	ENST00000256646	NM_024408.3	835	Gct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913422	32913423	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	98	465	0	ENST00000380152.3:c.4935dup	p.Glu1646ArgfsTer20	p.E1646Rfs*20	ENST00000380152		1644	gaa/gAaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913454	32913454	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	235	508	0	ENST00000380152.3:c.4963del	p.Tyr1655ThrfsTer15	p.Y1655Tfs*15	ENST00000380152		1654	tgT/tg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658565	3658565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	120	656	0	ENST00000294008.3:c.401C>T	p.Ala134Val	p.A134V	ENST00000294008	NM_032444.2	134	gCc/gTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032146	10032146	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	92	604	0	ENST00000330684.3:c.677T>C	p.Val226Ala	p.V226A	ENST00000330684	NM_001134407.1	226	gTc/gCc																																																																														
RARA	5914	MSKCC	GRCh37	17	38512413	38512413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	45	535	0	ENST00000254066.5:c.1324G>T	p.Gly442Cys	p.G442C	ENST00000254066	NM_000964.3	442	Ggc/Tgc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475608	40475608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	99	467	1	ENST00000264657.5:c.1636T>C	p.Trp546Arg	p.W546R	ENST00000264657	NM_139276.2	546	Tgg/Cgg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464504	25464504	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	113	558	1	ENST00000264709.3:c.2009T>A	p.Ile670Asn	p.I670N	ENST00000264709	NM_175629.2	670	aTc/aAc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794802	242794802	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	65	408	0	ENST00000334409.5:c.407A>G	p.Glu136Gly	p.E136G	ENST00000334409	NM_005018.2	136	gAg/gGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936988	178936988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	49	384	0	ENST00000263967.3:c.1669T>C	p.Tyr557His	p.Y557H	ENST00000263967	NM_006218.2	557	Tat/Cat																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056221	26056221	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	106	427	0	ENST00000343677.2:c.436A>G	p.Thr146Ala	p.T146A	ENST00000343677	NM_005319.3	146	Act/Gct																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202296	138202296	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	95	465	0	ENST00000237289.4:c.2213A>G	p.His738Arg	p.H738R	ENST00000237289	NM_001270507.1	738	cAt/cGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249119	55249119	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	120	651	0	ENST00000275493.2:c.2417A>G	p.Lys806Arg	p.K806R	ENST00000275493	NM_005228.3	806	aAa/aGa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38279363	38279363	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	146	673	0	ENST00000425967.3:c.1126A>T	p.Asn376Tyr	p.N376Y	ENST00000425967	NM_001174067.1	376	Aac/Tac																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371957	55371957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	89	389	0	ENST00000297316.4:c.647G>A	p.Gly216Asp	p.G216D	ENST00000297316	NM_022454.3	216	gGc/gAc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1325367	1325367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	100	587	1	ENST00000381566.1:c.308C>T	p.Thr103Met	p.T103M	ENST00000381566		103	aCg/aTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135785963	135785964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	26	368	0	ENST00000298552.3:c.1257dupC	p.Arg420GlnfsTer22	p.R420Qfs*22	ENST00000298552	NM_001162426.1	419	-/C																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	24	428	0	ENST00000330062.3:c.515G>T	p.Arg172Met	p.R172M	ENST00000330062	NM_002168.2	172	aGg/aTg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713856	30713856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	47	589	0	ENST00000359013.4:c.1256G>T	p.Cys419Phe	p.C419F	ENST00000359013	NM_001024847.2	419	tGc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023212	27023230	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGGGCCCTAGGCCCGCC	CGCGGGCCCTAGGCCCGCC	-			P-0027385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	25	306	0	ENST00000324856.7:c.319_337del	p.Ala107Ter	p.A107*	ENST00000324856	NM_006015.4	106	aaCGCGGGCCCTAGGCCCGCC/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	89	707	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221322	1221322	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	86	773	0	ENST00000326873.7:c.845T>G	p.Leu282Arg	p.L282R	ENST00000326873	NM_000455.4	282	cTc/cGc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691828	30691829	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	86	641	0	ENST00000359013.4:c.408dup	p.Ile137TyrfsTer20	p.I137Yfs*20	ENST00000359013	NM_001024847.2	135	-/T																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	327	569	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436081	110436081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	62	759	2	ENST00000375856.3:c.2320G>A	p.Ala774Thr	p.A774T	ENST00000375856	NM_003749.2	774	Gcg/Acg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89809315	89809315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	156	483	0	ENST00000389301.3:c.3658C>T	p.Pro1220Ser	p.P1220S	ENST00000389301	NM_000135.2	1220	Ccc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	129	596	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578488	7578488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	239	1008	1	ENST00000269305.4:c.442G>A	p.Asp148Asn	p.D148N	ENST00000269305	NM_001126112.2	148	Gat/Aat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32936806	32936806	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	114	491	0	ENST00000380152.3:c.7954del	p.Val2652CysfsTer5	p.V2652Cfs*5	ENST00000380152		2651	aGg/ag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100411	8100411	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	221	791	0	ENST00000346208.3:c.388del	p.Leu130SerfsTer65	p.L130Sfs*65	ENST00000346208		129	Ccc/cc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727565	66727576	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TGGCCAGAAAGG	TGGCCAGAAAGG	-			P-0028494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	100	348	2	ENST00000307102.5:c.283_291+3del		p.X95_splice	ENST00000307102	NM_002755.3	95																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30686324	30686325	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTGACAACCAGAAATCCTA			P-0028494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	97	524	0	ENST00000359013.4:c.274_275insATGTGACAACCAGAAATCCT	p.Cys92TyrfsTer9	p.C92Yfs*9	ENST00000359013	NM_001024847.2	85	-/TGTGACAACCAGAAATCCTA																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156666	20156666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	191	346	0	ENST00000379607.5:c.91G>A	p.Asp31Asn	p.D31N	ENST00000379607	NM_001412.3	31	Gat/Aat																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	154	624	0	ENST00000330062.3:c.514A>T	p.Arg172Trp	p.R172W	ENST00000330062	NM_002168.2	172	Agg/Tgg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442558	52442562	+	frameshift_variant	Frame_Shift_Del	DEL	AGACC	AGACC	-			P-0028605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	144	645	0	ENST00000460680.1:c.183_187del	p.Lys61AsnfsTer6	p.K61Nfs*6	ENST00000460680	NM_004656.3	61	aaGGTCTct/aact																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053136	180053137	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	140	643	0	ENST00000261937.6:c.1232dup	p.Asn411LysfsTer16	p.N411Kfs*16	ENST00000261937	NM_182925.4	411	aac/aaAc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117869004	117869004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	149	476	0	ENST00000297338.2:c.695A>G	p.Lys232Arg	p.K232R	ENST00000297338	NM_006265.2	232	aAa/aGa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	108	292	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	39	708	1	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
BARD1	580	MSKCC	GRCh37	2	215617178	215617178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	82	231	0	ENST00000260947.4:c.1670G>T	p.Cys557Phe	p.C557F	ENST00000260947	NM_000465.2	557	tGc/tTc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672276	86672277	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	195	454	1	ENST00000274376.6:c.2079dup	p.Ser694LeufsTer9	p.S694Lfs*9	ENST00000274376	NM_002890.2	693	agc/agCc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672379	86672420	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAGGTATTAAATTATTTATCAGTCTTGTTTTTGTTGGAATT	AGAGGTATTAAATTATTTATCAGTCTTGTTTTTGTTGGAATT	-			P-0029312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	104	244	4	ENST00000274376.6:c.2182_2184+39del		p.X728_splice	ENST00000274376	NM_002890.2	728																																																																															
ARID2	196528	MSKCC	GRCh37	12	46243472	46243472	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	187	321	0	ENST00000334344.6:c.1825C>T	p.Gln609Ter	p.Q609*	ENST00000334344	NM_152641.2	609	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579705	7579705	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	190	445	0	ENST00000269305.4:c.91del	p.Val31PhefsTer13	p.V31Ffs*13	ENST00000269305	NM_001126112.2	31	Gtt/tt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930307	39930307	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	102	216	0	ENST00000378444.4:c.3157del	p.Arg1053GlyfsTer2	p.R1053Gfs*2	ENST00000378444	NM_001123385.1	1053	Agg/gg																																																																														
NF1	4763	MSKCC	GRCh37	17	29560089	29560089	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	55	313	0	ENST00000358273.4:c.3567del	p.Gly1190AlafsTer25	p.G1190Afs*25	ENST00000358273	NM_001042492.2	1189	cAa/ca																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672234	86672235	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	143	317	0	ENST00000274376.6:c.2036_2037insT	p.Leu680IlefsTer9	p.L680Ifs*9	ENST00000274376	NM_002890.2	679	cga/cgTa																																																																														
ATM	472	MSKCC	GRCh37	11	108155201	108155201	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs200196781		P-0029955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	58	361	0	ENST00000278616.4:c.3993+1G>A		p.X1331_splice	ENST00000278616	NM_000051.3	1331																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597600	28597600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	70	505	0	ENST00000241453.7:c.2305G>A	p.Glu769Lys	p.E769K	ENST00000241453	NM_004119.2	769	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	42035110	42035110	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	204	595	0	ENST00000219905.7:c.4952C>G	p.Ser1651Cys	p.S1651C	ENST00000219905	NM_001164273.1	1651	tCt/tGt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522553	67522554	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0029955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	76	259	0	ENST00000274335.5:c.51_52del	p.Glu19ArgfsTer4	p.E19Rfs*4	ENST00000274335		17	gAA/g																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400906	72400906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	45	281	0	ENST00000357731.5:c.265C>A	p.Pro89Thr	p.P89T	ENST00000357731	NM_173808.2	89	Cct/Act																																																																														
ATM	472	MSKCC	GRCh37	11	108117838	108117839	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAT			P-0030378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	121	282	0	ENST00000278616.4:c.1051_1054dup	p.Ile352ArgfsTer8	p.I352Rfs*8	ENST00000278616	NM_000051.3	350	gca/gcAGATa																																																																														
STK11	6794	MSKCC	GRCh37	19	1218459	1218459	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	172	467	1	ENST00000326873.7:c.334C>T	p.Gln112Ter	p.Q112*	ENST00000326873	NM_000455.4	112	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	47	512	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931855	39931856	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0030519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	28	312	0	ENST00000378444.4:c.2743_2744del	p.Gly915Ter	p.G915*	ENST00000378444	NM_001123385.1	915	GGt/t																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0043357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	609	749	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179197	123179197	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	53	431	0	ENST00000218089.9:c.646C>T	p.Arg216Ter	p.R216*	ENST00000218089	NM_001042749.1	216	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0031368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			394	116	735	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376234	15376235	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031368-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			467	57	602	0	ENST00000263377.2:c.779dup	p.Pro261ThrfsTer41	p.P261Tfs*41	ENST00000263377	NM_058243.2	260	cca/ccCa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741660	17741660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	68	273	0	ENST00000250003.3:c.331C>G	p.Arg111Gly	p.R111G	ENST00000250003	NM_002478.4	111	Cgc/Ggc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431411	121431411	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	171	546	0	ENST00000257555.6:c.615G>C	p.Lys205Asn	p.K205N	ENST00000257555		205	aaG/aaC																																																																														
LATS2	26524	MSKCC	GRCh37	13	21565464	21565464	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	116	628	0	ENST00000382592.4:c.422A>T	p.Tyr141Phe	p.Y141F	ENST00000382592	NM_014572.2	141	tAc/tTc																																																																														
RB1	5925	MSKCC	GRCh37	13	49030351	49030351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	82	246	0	ENST00000267163.4:c.1826C>A	p.Pro609His	p.P609H	ENST00000267163	NM_000321.2	609	cCt/cAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42003165	42003165	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	257	500	0	ENST00000219905.7:c.2702A>T	p.Gln901Leu	p.Q901L	ENST00000219905	NM_001164273.1	901	cAa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	269	573	0	ENST00000269305.4:c.472del	p.Arg158AlafsTer12	p.R158Afs*12	ENST00000269305	NM_001126112.2	158	Cgc/gc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256900	41256900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	56	431	0	ENST00000357654.3:c.286G>C	p.Asp96His	p.D96H	ENST00000357654	NM_007294.3	96	Gac/Cac																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792609	33792609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	12	14	0	ENST00000498907.2:c.712G>T	p.Ala238Ser	p.A238S	ENST00000498907	NM_004364.3	238	Gcg/Tcg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228164	36228535	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGAGGTCTGGGGTGTGATGCCTGGGTCAGGGCGCCCCTATGAGAGCTCTTGAGGGTGGGAGTTAACTGTAGAGGTTGGAAACTGAGGCCTGGGGAGGAGACACTAGGTCACTTGAAGAGTTATTTCTAGAGTTAGCCAGGCTCCGTGGCTCATGCCTGTAATCCCGCCACTTTGGGAGGCCGAGGCAGGAGGATCGCATGAGCCCAGGAGTTGGAGACCAGCGTAGGCAACATGGCAAAACCCCATCTCTAAAATAAAAATTTAAAAAAGTTATTTCTAGAGCTGACATCAGAAAAATGAACCCCACCCATTTCCCTGTTAGCTCTGTCTTCAACAGTATATTCCTCCTTCCCCTGCTGCCACCTGCA	GGTGAGAGGTCTGGGGTGTGATGCCTGGGTCAGGGCGCCCCTATGAGAGCTCTTGAGGGTGGGAGTTAACTGTAGAGGTTGGAAACTGAGGCCTGGGGAGGAGACACTAGGTCACTTGAAGAGTTATTTCTAGAGTTAGCCAGGCTCCGTGGCTCATGCCTGTAATCCCGCCACTTTGGGAGGCCGAGGCAGGAGGATCGCATGAGCCCAGGAGTTGGAGACCAGCGTAGGCAACATGGCAAAACCCCATCTCTAAAATAAAAATTTAAAAAAGTTATTTCTAGAGCTGACATCAGAAAAATGAACCCCACCCATTTCCCTGTTAGCTCTGTCTTCAACAGTATATTCCTCCTTCCCCTGCTGCCACCTGCA	-			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	98	530	0	ENST00000222270.7:c.7550+2_7551del		p.X2517_splice	ENST00000222270	NM_014727.1	2517																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228640	36228754	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCAGGTATGGAGTGTGAGCTGGGGGGCGGGTGGTGGTCTGGAAGGGTCTTAGAGAGTGAGCAGGGGTGAGAGAGGTCATTCTGAGCACCAGCCTGGGTGACACTGCTGTCCCTC	ACCAGGTATGGAGTGTGAGCTGGGGGGCGGGTGGTGGTCTGGAAGGGTCTTAGAGAGTGAGCAGGGGTGAGAGAGGTCATTCTGAGCACCAGCCTGGGTGACACTGCTGTCCCTC	-			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	96	603	0	ENST00000222270.7:c.7658+1_7659-1del		p.X2553_splice	ENST00000222270	NM_014727.1	2553																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228841	36228959	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGTGAGTGGGGTTGGGGGGGAGGATGCCCCTTGGGTGGACGGACAGGTGCACTGGGTAGGGGGTACTGTCTGGTTTCTGTCCCCCTCCCCCCTGAGTTCCCTGTTCATCCTGCCCTG	CAGGTGAGTGGGGTTGGGGGGGAGGATGCCCCTTGGGTGGACGGACAGGTGCACTGGGTAGGGGGTACTGTCTGGTTTCTGTCCCCCTCCCCCCTGAGTTCCCTGTTCATCCTGCCCTG	-			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	111	583	0	ENST00000222270.7:c.7742+1_7743-1del		p.X2581_splice	ENST00000222270	NM_014727.1	2581																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229091	36229180	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGGGCTCCCAGTGGCTGTGGGAAGACAGTGGGTGAAGCGAGCCTGTCCGCGGGGACAGAGCACCTGATCTCCCCACCTCATCCCTGC	AGGTGGGCTCCCAGTGGCTGTGGGAAGACAGTGGGTGAAGCGAGCCTGTCCGCGGGGACAGAGCACCTGATCTCCCCACCTCATCCCTGC	-			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	82	533	0	ENST00000222270.7:c.7872+2_7873del		p.X2624_splice	ENST00000222270	NM_014727.1	2624																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45864782	45864783	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	133	530	0	ENST00000391945.4:c.1236dup	p.Gly413ArgfsTer10	p.G413Rfs*10	ENST00000391945	NM_000400.3	412	-/A																																																																														
BCL6	604	MSKCC	GRCh37	3	187447079	187447079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	302	568	1	ENST00000232014.4:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000232014	NM_001130845.1	372	Gcc/Acc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630739	187630739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	101	513	0	ENST00000441802.2:c.243C>A	p.Asn81Lys	p.N81K	ENST00000441802	NM_005245.3	81	aaC/aaA																																																																														
MSH3	4437	MSKCC	GRCh37	5	80088622	80088637	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GGAGAACAGGATCAAT	GGAGAACAGGATCAAT	TATTG			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	37	416	2	ENST00000265081.6:c.2614_2629delinsTATTG	p.Gly872TyrfsTer2	p.G872Yfs*2	ENST00000265081	NM_002439.4	872	GGAGAACAGGATCAATat/TATTGat																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056274	26056274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	68	426	0	ENST00000343677.2:c.383C>G	p.Pro128Arg	p.P128R	ENST00000343677	NM_005319.3	128	cCt/cGt																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324452	31324470	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGGGGTCACTCACCGGCCT	CGGGGTCACTCACCGGCCT	-			P-0043222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	18	329	0	ENST00000412585.2:c.338_343+13del		p.X113_splice	ENST00000412585	NM_005514.6	113																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008601-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	478	533	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008601-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	458	705	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008601-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			203	383	487	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670685	86670685	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008601-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	37	185	0	ENST00000274376.6:c.1963G>C	p.Glu655Gln	p.E655Q	ENST00000274376	NM_002890.2	655	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0024836-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			595	174	848	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259903	16259903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024836-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			545	35	806	1	ENST00000375759.3:c.7168C>T	p.Pro2390Ser	p.P2390S	ENST00000375759	NM_015001.2	2390	Ccc/Tcc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785662	50785662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024836-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			491	102	801	1	ENST00000398568.2:c.652G>A	p.Gly218Ser	p.G218S	ENST00000398568	NM_001042412.1	218	Ggt/Agt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251882	153251882	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0024836-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			259	33	521	0	ENST00000281708.4:c.1122+2T>A		p.X374_splice	ENST00000281708	NM_033632.3	374																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153251884	153251884	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024836-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			267	32	526	0	ENST00000281708.4:c.1122G>T	p.Lys374Asn	p.K374N	ENST00000281708	NM_033632.3	374	aaG/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112175564	112175565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0024836-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			278	17	478	0	ENST00000257430.4:c.4275_4276dup	p.Ser1426IlefsTer48	p.S1426Ifs*48	ENST00000257430	NM_000038.5	1425	gat/gATat																																																																														
ALK	238	MSKCC	GRCh37	2	29419698	29419698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024836-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			456	57	596	0	ENST00000389048.3:c.4102C>T	p.His1368Tyr	p.H1368Y	ENST00000389048	NM_004304.4	1368	Cat/Tat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212568860	212568860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024836-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			405	37	673	0	ENST00000342788.4:c.1258C>G	p.Leu420Val	p.L420V	ENST00000342788	NM_005235.2	420	Ctg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027016-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			336	182	350	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027016-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			159	447	555	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0027016-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			286	23	192	0	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027016-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			144	178	377	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0027016-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			148	59	253	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027016-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			127	119	223	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45007752	45007752	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027016-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			230	161	347	1	ENST00000558401.1:c.199G>T	p.Glu67Ter	p.E67*	ENST00000558401	NM_004048.2	67	Gaa/Taa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94908705	94908705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027016-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			633	210	491	0	ENST00000536441.1:c.1349G>A	p.Arg450His	p.R450H	ENST00000536441	NM_144665.3	450	cGc/cAc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374306	31374306	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0027016-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			525	136	394	0	ENST00000328111.2:c.307-2A>G		p.X103_splice	ENST00000328111	NM_006892.3	103																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355847	73355847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027016-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			543	241	464	0	ENST00000377767.4:c.124G>T	p.Ala42Ser	p.A42S	ENST00000377767	NM_014953.3	42	Gcg/Tcg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945791	17945791	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027016-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			529	94	620	0	ENST00000458235.1:c.2069G>A	p.Trp690Ter	p.W690*	ENST00000458235	NM_000215.3	690	tGg/tAg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46277836	46277836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027016-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			546	139	332	0	ENST00000371998.3:c.3634C>A	p.Pro1212Thr	p.P1212T	ENST00000371998		1212	Ccc/Acc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502805	186502805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027016-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			547	112	446	0	ENST00000323963.5:c.263C>T	p.Ala88Val	p.A88V	ENST00000323963		88	gCt/gTt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029340-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	255	228	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
PGR	5241	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029340-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	80	237	0	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599107	28599108	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0029340-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	426	808	0	ENST00000253063.3:c.555_556dup	p.Glu186AlafsTer62	p.E186Afs*62	ENST00000253063	NM_031459.4	185	ggc/gGCgc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252845	10252845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029340-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			736	446	702	1	ENST00000340748.4:c.3120C>A	p.Asn1040Lys	p.N1040K	ENST00000340748		1040	aaC/aaA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426744	212426744	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029340-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			936	168	605	0	ENST00000342788.4:c.2371A>G	p.Thr791Ala	p.T791A	ENST00000342788	NM_005235.2	791	Acc/Gcc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696638	47696638	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042205-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	20	573	0	ENST00000347630.2:c.310T>G	p.Phe104Val	p.F104V	ENST00000347630	NM_001007230.1	104	Ttc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0043037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	330	647	4	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
NRAS	4893	MSKCC	GRCh37	1	115251169	115251179	+	frameshift_variant	Frame_Shift_Del	DEL	CATGGCAATCC	CATGGCAATCC	-			P-0043037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	56	260	0	ENST00000369535.4:c.547_557del	p.Gly183CysfsTer9	p.G183Cfs*9	ENST00000369535	NM_002524.4	183	GGATTGCCATGt/t																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421379	12421379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	76	358	0	ENST00000287820.6:c.259G>T	p.Asp87Tyr	p.D87Y	ENST00000287820	NM_015869.4	87	Gat/Tat																																																																														
AR	367	MSKCC	GRCh37	X	66931313	66931313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	83	512	0	ENST00000374690.3:c.1955C>T	p.Pro652Leu	p.P652L	ENST00000374690	NM_000044.3	652	cCc/cTc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441235	52441235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	99	473	0	ENST00000460680.1:c.535C>T	p.Arg179Trp	p.R179W	ENST00000460680	NM_004656.3	179	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0043145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	15	341	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0043145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	46	655	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	145	389	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0043292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	430	803	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	121	495	2	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106649	27106649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	366	755	0	ENST00000324856.7:c.6260G>A	p.Gly2087Glu	p.G2087E	ENST00000324856	NM_006015.4	2087	gGa/gAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100994	27100994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	157	686	0	ENST00000324856.7:c.4276G>C	p.Asp1426His	p.D1426H	ENST00000324856	NM_006015.4	1426	Gat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105592	27105592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	288	586	1	ENST00000324856.7:c.5203G>A	p.Glu1735Lys	p.E1735K	ENST00000324856	NM_006015.4	1735	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680771	88680771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	142	666	0	ENST00000360948.2:c.486C>A	p.Phe162Leu	p.F162L	ENST00000360948	NM_001012338.2	162	ttC/ttA																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780661	56780661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	101	598	0	ENST00000337432.4:c.676C>T	p.Leu226Phe	p.L226F	ENST00000337432	NM_058216.2	226	Ctt/Ttt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266217	41266217	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0043292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	78	484	0	ENST00000349496.5:c.214C>T	p.Gln72Ter	p.Q72*	ENST00000349496	NM_001904.3	72	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295092	1295092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	13	114	0	ENST00000310581.5:c.13C>T	p.Pro5Ser	p.P5S	ENST00000310581	NM_198253.2	5	Ccc/Tcc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287404	33287404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0043292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	134	590	0	ENST00000374542.5:c.1693C>G	p.Gln565Glu	p.Q565E	ENST00000374542	NM_001141970.1	565	Cag/Gag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950032	44950033	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0043292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	273	308	0	ENST00000377967.4:c.3802_3803dup	p.Pro1269TyrfsTer24	p.P1269Yfs*24	ENST00000377967	NM_021140.2	1267	-/GT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0043295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	428	905	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42041426	42041426	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	189	590	0	ENST00000219905.7:c.5621del	p.Ser1874PhefsTer4	p.S1874Ffs*4	ENST00000219905	NM_001164273.1	1874	tCt/tt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982015	93982015	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0043295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	86	342	1	ENST00000369303.4:c.1449+1G>A		p.X483_splice	ENST00000369303	NM_004440.3	483																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56160760	56160761	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0020360-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			134	276	365	0	ENST00000399503.3:c.1035+1dup		p.Q345fs	ENST00000399503	NM_005921.1	345	cag/caGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020360-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			333	675	993	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	164	583	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	153	928	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911322	32911322	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	202	626	0	ENST00000380152.3:c.2830A>T	p.Lys944Ter	p.K944*	ENST00000380152		944	Aaa/Taa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148508727	148508727	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	61	451	0	ENST00000320356.2:c.1937A>T	p.Tyr646Phe	p.Y646F	ENST00000320356	NM_004456.4	646	tAc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	265	923	0	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286206	66286206	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138678484		P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	127	380	0	ENST00000273854.3:c.1480C>T	p.Arg494Cys	p.R494C	ENST00000273854	NM_004439.5	494	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992838	72992838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	307	799	0	ENST00000268489.5:c.1207C>T	p.Leu403Phe	p.L403F	ENST00000268489	NM_006885.3	403	Ctt/Ttt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068079	94068079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	58	418	0	ENST00000369303.4:c.883C>T	p.Arg295Cys	p.R295C	ENST00000369303	NM_004440.3	295	Cgt/Tgt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678720	52678720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	151	494	0	ENST00000394830.3:c.899G>A	p.Arg300Lys	p.R300K	ENST00000394830	NM_018313.4	300	aGg/aAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106507	27106508	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	114	939	2	ENST00000324856.7:c.6118_6119delinsAA	p.Gly2040Lys	p.G2040K	ENST00000324856	NM_006015.4	2040	GGg/AAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120463021	120463021	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	181	438	0	ENST00000256646.2:c.5311-1G>A		p.X1771_splice	ENST00000256646	NM_024408.3	1771																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30100170	30100170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	215	778	0	ENST00000331968.5:c.1450C>T	p.Pro484Ser	p.P484S	ENST00000331968	NM_002742.2	484	Cct/Tct																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650776	37650776	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	190	654	0	ENST00000447079.4:c.2249-1G>A		p.X750_splice	ENST00000447079	NM_015083.1	750																																																																															
MSI2	124540	MSKCC	GRCh37	17	55704629	55704629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	128	929	1	ENST00000284073.2:c.692C>T	p.Pro231Leu	p.P231L	ENST00000284073	NM_138962.2	231	cCc/cTc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760883	59760883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	110	698	1	ENST00000259008.2:c.3524C>A	p.Thr1175Asn	p.T1175N	ENST00000259008	NM_032043.2	1175	aCt/aAt																																																																														
AXL	558	MSKCC	GRCh37	19	41737181	41737182	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	189	867	2	ENST00000301178.4:c.761_762delinsTT	p.Pro254Leu	p.P254L	ENST00000301178	NM_021913.4	254	cCC/cTT																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45864824	45864825	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	290	1237	2	ENST00000391945.4:c.1194_1195delinsTT	p.Leu399Phe	p.L399F	ENST00000391945	NM_000400.3	398	acCCtc/acTTtc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757435	40757435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	435	825	0	ENST00000373198.4:c.2863G>A	p.Gly955Arg	p.G955R	ENST00000373198	NM_133170.3	955	Gga/Aga																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664806	138664807	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	62	297	1	ENST00000330315.3:c.758_759delinsTT	p.Ala253Val	p.A253V	ENST00000330315	NM_023067.3	253	gCC/gTT																																																																														
KDR	3791	MSKCC	GRCh37	4	55964877	55964877	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	136	487	0	ENST00000263923.4:c.2360G>C	p.Arg787Pro	p.R787P	ENST00000263923	NM_002253.2	787	cGg/cCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530972	187530972	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	224	610	0	ENST00000441802.2:c.10051G>T	p.Glu3351Ter	p.E3351*	ENST00000441802	NM_005245.3	3351	Gag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628661	187628661	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	226	860	0	ENST00000441802.2:c.2321T>G	p.Leu774Arg	p.L774R	ENST00000441802	NM_005245.3	774	cTg/cGg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721187	176721187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	56	472	0	ENST00000439151.2:c.6818G>T	p.Cys2273Phe	p.C2273F	ENST00000439151	NM_022455.4	2273	tGt/tTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117717424	117717424	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	44	361	0	ENST00000368508.3:c.783T>A	p.Phe261Leu	p.F261L	ENST00000368508	NM_002944.2	261	ttT/ttA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718211	117718211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	80	535	0	ENST00000368508.3:c.646G>T	p.Asp216Tyr	p.D216Y	ENST00000368508	NM_002944.2	216	Gat/Tat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5081733	5081733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	76	241	0	ENST00000381652.3:c.2443C>A	p.Leu815Ile	p.L815I	ENST00000381652	NM_004972.3	815	Cta/Ata																																																																														
RXRA	6256	MSKCC	GRCh37	9	137320993	137320993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	252	1114	0	ENST00000481739.1:c.950C>T	p.Ser317Phe	p.S317F	ENST00000481739	NM_002957.4	317	tCc/tTc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15833993	15834015	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GGGAAAGTGATTCAGTTCAAGGT	GGGAAAGTGATTCAGTTCAAGGT	-			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	73	406	0	ENST00000307771.7:c.754_771+5del		p.X252_splice	ENST00000307771	NM_005089.3	252																																																																															
BCOR	54880	MSKCC	GRCh37	X	39932010	39932010	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	252	466	0	ENST00000378444.4:c.2589T>G	p.Ser863Arg	p.S863R	ENST00000378444	NM_001123385.1	863	agT/agG																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396875	139396875	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0043111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	417	817	0	ENST00000277541.6:c.5233del	p.Val1745CysfsTer53	p.V1745Cfs*53	ENST00000277541	NM_017617.3	1745	Gtg/tg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286235	66286235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005323-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	111	183	0	ENST00000273854.3:c.1451G>A	p.Ser484Asn	p.S484N	ENST00000273854	NM_004439.5	484	aGc/aAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710819	117710819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005323-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			154	222	199	0	ENST00000368508.3:c.1453T>C	p.Ser485Pro	p.S485P	ENST00000368508	NM_002944.2	485	Tct/Cct																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450405	50450405	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005323-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	97	233	0	ENST00000331340.3:c.589G>T	p.Val197Phe	p.V197F	ENST00000331340	NM_006060.4	197	Gtt/Ttt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748684	43748684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005323-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	35	437	0	ENST00000382044.4:c.2122C>G	p.Leu708Val	p.L708V	ENST00000382044	NM_001141980.1	708	Ctt/Gtt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374701	118374701	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009948-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			320	119	166	0	ENST00000534358.1:c.8094A>T	p.Glu2698Asp	p.E2698D	ENST00000534358	NM_005933.3	2698	gaA/gaT																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81922859	81922859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009948-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			357	102	213	0	ENST00000359376.3:c.848C>A	p.Pro283His	p.P283H	ENST00000359376	NM_002661.3	283	cCt/cAt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965248	81965248	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009948-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			365	48	262	0	ENST00000359376.3:c.2728A>C	p.Ile910Leu	p.I910L	ENST00000359376	NM_002661.3	910	Att/Ctt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009948-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			392	142	398	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
CCND3	896	MSKCC	GRCh37	6	41909347	41909347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009948-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			327	71	277	0	ENST00000372991.4:c.41G>T	p.Arg14Leu	p.R14L	ENST00000372991	NM_001760.3	14	cGg/cTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009948-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			457	8024	314	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
HGF	3082	MSKCC	GRCh37	7	81381504	81381504	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009948-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			322	32	150	0	ENST00000222390.5:c.557del	p.Gly186AspfsTer27	p.G186Dfs*27	ENST00000222390	NM_000601.4	186	gGa/ga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			336	51	159	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279864	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0022869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	26	99	1	ENST00000371998.3:c.3792_3794delACA	p.Gln1276del	p.Q1276del	ENST00000371998		1264	CAA/-																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189387	56189387	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	139	105	0	ENST00000399503.3:c.4421delC	p.Pro1474LeufsTer16	p.P1474Lfs*16	ENST00000399503	NM_005921.1	1473	atC/at																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197700	123197700	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0022869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	42	76	0	ENST00000218089.9:c.1824T>A	p.His608Gln	p.H608Q	ENST00000218089	NM_001042749.1	608	caT/caA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431811	49431811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022869-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	117	135	0	ENST00000301067.7:c.9328C>T	p.Arg3110Cys	p.R3110C	ENST00000301067	NM_003482.3	3110	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031005-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1460	196	836	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0031005-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	402	885	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242481	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAA	TTAAGAGAAGCAA	C	rs397509368		P-0031005-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	534	604	0	ENST00000275493.2:c.2239_2251delinsC	p.Leu747_Thr751delinsPro	p.L747_T751delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAAca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0042826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	353	1098	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	285	477	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0042829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	356	854	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	413	593	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0042829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	193	347	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164508	47164508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201756643		P-0042829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	212	430	0	ENST00000409792.3:c.1618C>T	p.Arg540Ter	p.R540*	ENST00000409792	NM_014159.6	540	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022914	27022945	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG	CCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG	-			P-0042829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	16	53	0	ENST00000324856.7:c.31_62del	p.Ser11LeufsTer89	p.S11Lfs*89	ENST00000324856	NM_006015.4	7	cCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG/c																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992914	72992914	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	59	1009	0	ENST00000268489.5:c.1131A>C	p.Glu377Asp	p.E377D	ENST00000268489	NM_006885.3	377	gaA/gaC																																																																														
ALK	238	MSKCC	GRCh37	2	29551231	29551231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	146	753	0	ENST00000389048.3:c.1399G>A	p.Glu467Lys	p.E467K	ENST00000389048	NM_004304.4	467	Gag/Aag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	146	735	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193202273	193202273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	60	556	0	ENST00000367435.3:c.1305G>A	p.Met435Ile	p.M435I	ENST00000367435	NM_024529.4	435	atG/atA																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416588	121416588	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	87	758	0	ENST00000257555.6:c.17G>C	p.Ser6Thr	p.S6T	ENST00000257555		6	aGc/aCc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646672	23646672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	29	628	0	ENST00000261584.4:c.1195C>T	p.Pro399Ser	p.P399S	ENST00000261584	NM_024675.3	399	Cct/Tct																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621158	1621168	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGGAGCTG	CCCCGGAGCTG	-			P-0042834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	118	1065	0	ENST00000344749.5:c.978_988del	p.Ser327CysfsTer18	p.S327Cfs*18	ENST00000344749	NM_001136139.2	326	ggCAGCTCCGGGGat/ggat																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609639	81609639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	286	699	1	ENST00000298171.2:c.1237G>T	p.Gly413Cys	p.G413C	ENST00000298171	NM_000369.2	413	Ggc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821140	72821153	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGGCTCGCCGGT	CCGGGCTCGCCGGT	-			P-0042990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	39	742	0	ENST00000268489.5:c.11022_11035del	p.Pro3675GlyfsTer51	p.P3675Gfs*51	ENST00000268489	NM_006885.3	3674	ggACCGGCGAGCCCGGtg/ggtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578520	7578568	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGA	AGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGA	-			P-0042990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	307	990	0	ENST00000269305.4:c.376-14_410del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
E2F3	1871	MSKCC	GRCh37	6	20402565	20402565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	171	365	1	ENST00000346618.3:c.102C>A	p.Asp34Glu	p.D34E	ENST00000346618	NM_001949.4	34	gaC/gaA																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271273	38271273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	307	958	0	ENST00000425967.3:c.2435C>G	p.Pro812Arg	p.P812R	ENST00000425967	NM_001174067.1	812	cCc/cGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0043076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	113	380	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1808636	1808636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	574	975	2	ENST00000260795.2:c.2249G>A	p.Arg750His	p.R750H	ENST00000260795		750	cGt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860470	151860470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0043076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	138	578	0	ENST00000262189.6:c.10192C>T	p.Arg3398Trp	p.R3398W	ENST00000262189	NM_170606.2	3398	Cgg/Tgg																																																																														
SESN1	27244	MSKCC	GRCh37	6	109321716	109321716	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0043205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	183	715	0	ENST00000436639.2:c.707T>A	p.Leu236His	p.L236H	ENST00000436639	NM_014454.2	236	cTt/cAt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412869	63412869	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0043205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	214	868	0	ENST00000330258.3:c.298A>T	p.Ser100Cys	p.S100C	ENST00000330258	NM_152424.3	100	Agt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	268	781	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0001391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	64	376	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0001391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	58	465	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0001391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	121	443	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	104	614	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212587179	212587179	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			540	82	604	0	ENST00000342788.4:c.822A>C	p.Gln274His	p.Q274H	ENST00000342788	NM_005235.2	274	caA/caC																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226351	2226351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	146	857	0	ENST00000326181.6:c.1964G>A	p.Arg655Gln	p.R655Q	ENST00000326181	NM_032271.2	655	cGa/cAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197838	66197838	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	18	328	0	ENST00000273854.3:c.2861A>C	p.Asn954Thr	p.N954T	ENST00000273854	NM_004439.5	954	aAt/aCt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245723	46245723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	84	646	0	ENST00000334344.6:c.3817C>T	p.Arg1273Ter	p.R1273*	ENST00000334344	NM_152641.2	1273	Cga/Tga																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073782	8073782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	101	475	0	ENST00000377482.5:c.877C>T	p.Pro293Ser	p.P293S	ENST00000377482	NM_018948.3	293	Cca/Tca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249520	153249520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	150	596	1	ENST00000281708.4:c.1258C>T	p.His420Tyr	p.H420Y	ENST00000281708	NM_033632.3	420	Cat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112175384	112175384	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	111	361	0	ENST00000257430.4:c.4094del	p.Gly1365ValfsTer50	p.G1365Vfs*50	ENST00000257430	NM_000038.5	1365	Ggt/gt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637069	176637069	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			748	86	763	1	ENST00000439151.2:c.1669A>G	p.Ser557Gly	p.S557G	ENST00000439151	NM_022455.4	557	Agc/Ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005331-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			65	637	618	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	441002	441002	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005331-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	42	306	0	ENST00000399788.2:c.1756T>C	p.Phe586Leu	p.F586L	ENST00000399788	NM_001042603.1	586	Ttc/Ctc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422670	49422670	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005331-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	36	556	0	ENST00000301067.7:c.14323G>T	p.Glu4775Ter	p.E4775*	ENST00000301067	NM_003482.3	4775	Gaa/Taa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70967549	70967549	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005331-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	174	513	0	ENST00000276594.2:c.1474G>C	p.Val492Leu	p.V492L	ENST00000276594	NM_024504.3	492	Gtg/Ctg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			473	133	539	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			153	532	280	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
MAX	4149	MSKCC	GRCh37	14	65569036	65569036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			537	198	639	0	ENST00000358664.4:c.22G>T	p.Glu8Ter	p.E8*	ENST00000358664	NM_002382.4	8	Gag/Tag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467197	25467197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			522	164	657	0	ENST00000264709.3:c.1678G>T	p.Val560Leu	p.V560L	ENST00000264709	NM_175629.2	560	Gtg/Ttg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539493	187539493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			59	164	397	0	ENST00000441802.2:c.8247G>T	p.Glu2749Asp	p.E2749D	ENST00000441802	NM_005245.3	2749	gaG/gaT																																																																														
MED12	9968	MSKCC	GRCh37	X	70344679	70344679	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			633	151	665	0	ENST00000374080.3:c.2040del	p.Lys681SerfsTer30	p.K681Sfs*30	ENST00000374080		680	gaG/ga																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2489207	2489207	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			941	280	1020	0	ENST00000355716.4:c.112G>C	p.Ala38Pro	p.A38P	ENST00000355716	NM_003820.2	38	Gct/Cct																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932152	36932152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			585	222	852	0	ENST00000361632.4:c.2317A>G	p.Thr773Ala	p.T773A	ENST00000361632		773	Act/Gct																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46266444	46266444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			255	180	434	0	ENST00000371998.3:c.2429C>T	p.Ser810Phe	p.S810F	ENST00000371998		810	tCt/tTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096065	11096068	+	frameshift_variant	Frame_Shift_Del	DEL	GGAC	GGAC	-			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			92	233	985	0	ENST00000344626.4:c.339_342del	p.Met113IlefsTer189	p.M113Ifs*189	ENST00000344626	NM_003072.3	113	atGGAC/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			85	677	836	1	ENST00000269305.4:c.718_719delinsTT	p.Ser240Phe	p.S240F	ENST00000269305	NM_001126112.2	240	AGt/TTt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115282336	115282336	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			298	352	520	0	ENST00000438362.2:c.314A>T	p.Asn105Ile	p.N105I	ENST00000438362	NM_001242891.1	105	aAc/aTc																																																																														
MYC	4609	MSKCC	GRCh37	8	128752830	128752830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			955	134	382	0	ENST00000377970.2:c.991C>T	p.Arg331Trp	p.R331W	ENST00000377970	NM_002467.4	331	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151902197	151902197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			912	226	614	0	ENST00000262189.6:c.3955G>A	p.Asp1319Asn	p.D1319N	ENST00000262189	NM_170606.2	1319	Gat/Aat																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300812	137300812	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007788-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			429	246	878	0	ENST00000481739.1:c.457G>T	p.Glu153Ter	p.E153*	ENST00000481739	NM_002957.4	153	Gag/Tag																																																																														
AXL	558	MSKCC	GRCh37	19	41736935	41736935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	68	822	4	ENST00000301178.4:c.650G>A	p.Arg217His	p.R217H	ENST00000301178	NM_021913.4	217	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	105	828	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	201	557	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	47	436	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402577	139402577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	91	943	2	ENST00000277541.6:c.3340C>T	p.Arg1114Cys	p.R1114C	ENST00000277541	NM_017617.3	1114	Cgc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	158	605	9	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932085	39932085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	80	461	0	ENST00000378444.4:c.2514del	p.Lys839SerfsTer17	p.K839Sfs*17	ENST00000378444	NM_001123385.1	838	ccC/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	63	654	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
NBN	4683	MSKCC	GRCh37	8	90958479	90958480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	95	663	0	ENST00000265433.3:c.1958dup	p.Leu654AlafsTer5	p.L654Afs*5	ENST00000265433	NM_002485.4	653	aag/aaAg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2135246	2135246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	79	1025	2	ENST00000219476.3:c.4585C>T	p.Arg1529Trp	p.R1529W	ENST00000219476	NM_000548.3	1529	Cgg/Tgg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	60	986	1	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	75	1002	6	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																														
NF2	4771	MSKCC	GRCh37	22	30050707	30050708	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	81	516	0	ENST00000338641.4:c.514dup	p.Arg172LysfsTer31	p.R172Kfs*31	ENST00000338641	NM_000268.3	170	cca/ccAa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	100	1156	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426774	49426774	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	33	404	3	ENST00000301067.7:c.11714A>T	p.Gln3905Leu	p.Q3905L	ENST00000301067	NM_003482.3	3905	cAg/cTg																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39325183	39325183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	97	1069	0	ENST00000373001.3:c.136G>A	p.Ala46Thr	p.A46T	ENST00000373001	NM_022157.3	46	Gca/Aca																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436584	110436584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	106	1200	2	ENST00000375856.3:c.1817C>T	p.Ser606Leu	p.S606L	ENST00000375856	NM_003749.2	606	tCg/tTg																																																																														
IDH2	3418	MSKCC	GRCh37	15	90645513	90645513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	10	75	0	ENST00000330062.3:c.110G>A	p.Arg37His	p.R37H	ENST00000330062	NM_002168.2	37	cGc/cAc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133780	2133780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	73	915	0	ENST00000219476.3:c.3968C>T	p.Ala1323Val	p.A1323V	ENST00000219476	NM_000548.3	1323	gCg/gTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640449	3640449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142079276		P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	88	1120	1	ENST00000294008.3:c.3190G>A	p.Gly1064Arg	p.G1064R	ENST00000294008	NM_032444.2	1064	Gga/Aga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273995	10273995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	86	1130	2	ENST00000330684.3:c.274G>A	p.Gly92Arg	p.G92R	ENST00000330684	NM_001134407.1	92	Ggg/Agg																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110098	8110098	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	98	605	0	ENST00000585124.1:c.507C>G	p.Ser169Arg	p.S169R	ENST00000585124	NM_004217.3	169	agC/agG																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526083	66526083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	71	574	0	ENST00000358598.2:c.914G>A	p.Arg305His	p.R305H	ENST00000358598	NM_212471.2	305	cGt/cAt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610505	10610505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	94	891	0	ENST00000171111.5:c.205G>A	p.Glu69Lys	p.E69K	ENST00000171111	NM_203500.1	69	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210785	36210785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	88	1144	3	ENST00000222270.7:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000222270	NM_014727.1	179	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214713	36214714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	22	677	1	ENST00000222270.7:c.3145dup	p.Ala1049GlyfsTer39	p.A1049Gfs*39	ENST00000222270	NM_014727.1	1047	cgg/cGgg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797405	42797405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	65	1039	3	ENST00000575354.2:c.3767G>A	p.Arg1256Gln	p.R1256Q	ENST00000575354	NM_015125.3	1256	cGg/cAg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095881	178095881	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	116	658	1	ENST00000397062.3:c.1450A>T	p.Met484Leu	p.M484L	ENST00000397062	NM_006164.4	484	Atg/Ttg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89156918	89156920	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	70	763	0	ENST00000336596.2:c.27_29del	p.Leu11del	p.L11del	ENST00000336596	NM_005233.5	7	aTCCtc/atc																																																																														
KDR	3791	MSKCC	GRCh37	4	55984846	55984846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	91	808	2	ENST00000263923.4:c.283G>A	p.Gly95Arg	p.G95R	ENST00000263923	NM_002253.2	95	Gga/Aga																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181800	56181800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	74	535	1	ENST00000399503.3:c.4024A>G	p.Lys1342Glu	p.K1342E	ENST00000399503	NM_005921.1	1342	Aaa/Gaa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265446	152265446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	57	665	0	ENST00000206249.3:c.899G>A	p.Arg300His	p.R300H	ENST00000206249	NM_000125.3	300	cGc/cAc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431665	6431665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	114	885	2	ENST00000356142.4:c.218C>T	p.Pro73Leu	p.P73L	ENST00000356142	NM_018890.3	73	cCg/cTg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729731	41729731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	60	614	0	ENST00000242208.4:c.798G>T	p.Glu266Asp	p.E266D	ENST00000242208	NM_002192.2	266	gaG/gaT																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29196013	29196014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	84	822	1	ENST00000240100.2:c.584dup	p.Pro196SerfsTer42	p.P196Sfs*42	ENST00000240100	NM_001394.6	195	ggt/ggGt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104706	69104706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	37	756	0	ENST00000288368.4:c.4550T>C	p.Leu1517Pro	p.L1517P	ENST00000288368	NM_024870.2	1517	cTg/cCg																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841048	15841048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	39	383	0	ENST00000307771.7:c.1132C>T	p.Arg378Trp	p.R378W	ENST00000307771	NM_005089.3	378	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	316	768	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920469	134920469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	130	796	0	ENST00000398015.3:c.2284G>A	p.Asp762Asn	p.D762N	ENST00000398015	NM_004441.4	762	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0022928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	383	743	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
HGF	3082	MSKCC	GRCh37	7	81359091	81359091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	18	428	0	ENST00000222390.5:c.870C>A	p.Asp290Glu	p.D290E	ENST00000222390	NM_000601.4	290	gaC/gaA																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266053	41266624	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	ACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTA	ACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTA	-			P-0022928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	68	383	0	ENST00000349496.5:c.52_423del		p.X18_splice	ENST00000349496	NM_001904.3	18	gACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAac/gac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	62	450	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0035830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	36	575	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121796	2121796	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	30	751	0	ENST00000219476.3:c.1958G>C	p.Arg653Thr	p.R653T	ENST00000219476	NM_000548.3	653	aGa/aCa																																																																														
APC	324	MSKCC	GRCh37	5	112173345	112173345	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	84	281	0	ENST00000257430.4:c.2054G>A	p.Trp685Ter	p.W685*	ENST00000257430	NM_000038.5	685	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0036060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	142	478	0	ENST00000269305.4:c.97-2A>G		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198281557	198281557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	98	493	0	ENST00000335508.6:c.574C>A	p.Pro192Thr	p.P192T	ENST00000335508	NM_012433.2	192	Cct/Act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	120	596	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	45	707	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	30	417	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174437	11174437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	80	757	0	ENST00000361445.4:c.7238G>T	p.Ser2413Ile	p.S2413I	ENST00000361445	NM_004958.3	2413	aGt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	113	841	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266472	55266472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	90	738	0	ENST00000275493.2:c.2764G>A	p.Glu922Lys	p.E922K	ENST00000275493	NM_005228.3	922	Gag/Aag																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647745	2647745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	62	708	0	ENST00000342085.4:c.1648C>T	p.His550Tyr	p.H550Y	ENST00000342085	NM_002613.4	550	Cac/Tac																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40442025	40442025	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	34	842	1	ENST00000345506.4:c.270C>A	p.Tyr90Ter	p.Y90*	ENST00000345506	NM_003152.3	90	taC/taA																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117948	70117948	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	144	477	0	ENST00000245479.2:c.416T>C	p.Leu139Pro	p.L139P	ENST00000245479	NM_000346.3	139	cTg/cCg																																																																														
KDR	3791	MSKCC	GRCh37	4	55964968	55964968	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	17	341	0	ENST00000263923.4:c.2269G>T	p.Ala757Ser	p.A757S	ENST00000263923	NM_002253.2	757	Gcc/Tcc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020396	69020396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	25	598	0	ENST00000288368.4:c.2768C>A	p.Ser923Tyr	p.S923Y	ENST00000288368	NM_024870.2	923	tCt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	175	605	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827934	40827934	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61749502		P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	270	495	0	ENST00000373198.4:c.2494G>A	p.Ala832Thr	p.A832T	ENST00000373198	NM_133170.3	832	Gcc/Acc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	55	334	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	274	417	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	138	563	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112175706	112175706	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	202	277	0	ENST00000257430.4:c.4415del	p.Val1472GlufsTer35	p.V1472Efs*35	ENST00000257430	NM_000038.5	1472	gTa/ga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	137	497	0	ENST00000342988.3:c.1067C>G	p.Pro356Arg	p.P356R	ENST00000342988	NM_005359.5	356	cCt/cGt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524637	176524637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	546	838	0	ENST00000292408.4:c.2369G>A	p.Gly790Glu	p.G790E	ENST00000292408	NM_213647.1	790	gGa/gAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356195	66356195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	149	403	0	ENST00000273854.3:c.1302C>A	p.His434Gln	p.H434Q	ENST00000273854	NM_004439.5	434	caC/caA																																																																														
SDHA	6389	MSKCC	GRCh37	5	233677	233678	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	85	275	1	ENST00000264932.6:c.981_982delinsAA	p.Met327_Glu328delinsIleLys	p.M327_E328delinsIK	ENST00000264932	NM_004168.2	327	atGGag/atAAag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55225377	55225377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	100	360	1	ENST00000275493.2:c.1229G>T	p.Trp410Leu	p.W410L	ENST00000275493	NM_005228.3	410	tGg/tTg																																																																														
MET	4233	MSKCC	GRCh37	7	116411874	116411892	+	intron_variant	Intron	DEL	ACAAGCTCTTTCTTTCTCT	ACAAGCTCTTTCTTTCTCT	-			P-0038228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	638	680	0	ENST00000397752.3:c.2888-29_2888-11del		p.*963*	ENST00000397752	NM_000245.2																																																																																
NTRK3	4916	MSKCC	GRCh37	15	88678509	88678509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	89	546	0	ENST00000360948.2:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000360948	NM_001012338.2	343	Cgg/Tgg																																																																														
CD276	80381	MSKCC	GRCh37	15	73996188	73996188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	110	808	0	ENST00000318443.5:c.922G>A	p.Ala308Thr	p.A308T	ENST00000318443	NM_001024736.1	308	Gcc/Acc																																																																														
AR	367	MSKCC	GRCh37	X	66765744	66765744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	144	1083	1	ENST00000374690.3:c.756G>T	p.Glu252Asp	p.E252D	ENST00000374690	NM_000044.3	252	gaG/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038345-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	210	554	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123181346	123181346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038345-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	43	66	0	ENST00000218089.9:c.810G>T	p.Lys270Asn	p.K270N	ENST00000218089	NM_001042749.1	270	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	627	785	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	151	235	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856595	111856595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	20	183	0	ENST00000341259.2:c.646C>T	p.Arg216Cys	p.R216C	ENST00000341259	NM_005475.2	216	Cgc/Tgc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775932	9775932	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	286	700	1	ENST00000377346.4:c.396C>A	p.Cys132Ter	p.C132*	ENST00000377346	NM_005026.3	132	tgC/tgA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829700	72829700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	239	621	0	ENST00000268489.5:c.6881G>A	p.Arg2294Gln	p.R2294Q	ENST00000268489	NM_006885.3	2294	cGa/cAa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56414908	56414908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	113	458	0	ENST00000348428.3:c.2309A>G	p.Asn770Ser	p.N770S	ENST00000348428	NM_006785.3	770	aAt/aGt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177789	56177789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	55	277	0	ENST00000399503.3:c.2762G>A	p.Ser921Asn	p.S921N	ENST00000399503	NM_005921.1	921	aGt/aAt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79952261	79952261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	140	300	0	ENST00000265081.6:c.269C>T	p.Pro90Leu	p.P90L	ENST00000265081	NM_002439.4	90	cCa/cTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522142	157522143	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0038955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	191	570	0	ENST00000346085.5:c.4414_4415del	p.Pro1472LeufsTer37	p.P1472Lfs*37	ENST00000346085	NM_020732.3	1472	CCt/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	267	676	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175760	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	90	303	0	ENST00000257430.4:c.4469del	p.His1490LeufsTer17	p.H1490Lfs*17	ENST00000257430	NM_000038.5	1490	cAt/ct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229393	36229393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	70	581	0	ENST00000222270.7:c.8083G>A	p.Glu2695Lys	p.E2695K	ENST00000222270	NM_014727.1	2695	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112173999	112173999	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	119	281	0	ENST00000257430.4:c.2708del	p.Asp903AlafsTer13	p.D903Afs*13	ENST00000257430	NM_000038.5	903	gAc/gc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128305388	128305388	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	190	694	0	ENST00000265960.3:c.908A>T	p.Glu303Val	p.E303V	ENST00000265960	NM_001006617.1	303	gAa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0042791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	503	638	1	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	240	577	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711947	89711947	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0042791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	309	425	3	ENST00000371953.3:c.565A>T	p.Arg189Ter	p.R189*	ENST00000371953	NM_000314.4	189	Aga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424459	49424463	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCC	CTGCC	-			P-0042791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	493	520	0	ENST00000301067.7:c.13760_13764del	p.Gly4587GlufsTer17	p.G4587Efs*17	ENST00000301067	NM_003482.3	4587	gGGCAG/g																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425363	49425364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	383	662	1	ENST00000301067.7:c.13124dup	p.Pro4376ThrfsTer34	p.P4376Tfs*34	ENST00000301067	NM_003482.3	4375	gga/ggGa																																																																														
POLE	5426	MSKCC	GRCh37	12	133256191	133256191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	329	486	0	ENST00000320574.5:c.470T>C	p.Phe157Ser	p.F157S	ENST00000320574	NM_006231.2	157	tTc/tCc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933481	49933481	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	458	614	1	ENST00000296474.3:c.2709G>C	p.Glu903Asp	p.E903D	ENST00000296474	NM_002447.2	903	gaG/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0042865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	154	1080	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	67	516	0				ENST00000310581	NM_198253.2																																																																																
PPP2R1A	5518	MSKCC	GRCh37	19	52724339	52724339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	49	716	0	ENST00000322088.6:c.1471G>A	p.Gly491Arg	p.G491R	ENST00000322088	NM_014225.5	491	Gga/Aga																																																																														
ETV6	2120	MSKCC	GRCh37	12	12038859	12038859	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0042865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	29	296	0	ENST00000396373.4:c.1153-1G>A		p.X385_splice	ENST00000396373	NM_001987.4	385																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0042865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	84	1065	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106973	27106973	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	45	688	1	ENST00000324856.7:c.6584T>A	p.Leu2195His	p.L2195H	ENST00000324856	NM_006015.4	2195	cTc/cAc																																																																														
RB1	5925	MSKCC	GRCh37	13	49050980	49050981	+	splice_donor_variant	Splice_Site	DEL	GT	GT	-			P-0042865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	24	246	0	ENST00000267163.4:c.2663+1_2663+2del		p.X888_splice	ENST00000267163	NM_000321.2	888																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061558	38061559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	34	445	0	ENST00000250448.2:c.430dup	p.Ala144GlyfsTer83	p.A144Gfs*83	ENST00000250448	NM_004496.3	144	gcg/gGcg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	17	410	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	44	325	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	44	325	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	44	325	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577573	7577573	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	49	526	0	ENST00000269305.4:c.708C>G	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taC/taG																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	13	327	2	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	15	338	0	ENST00000288602.6:c.1786G>A	p.Gly596Ser	p.G596S	ENST00000288602	NM_004333.4	596	Ggt/Agt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368223	45368223	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	31	337	0	ENST00000262160.6:c.1379C>A	p.Ser460Ter	p.S460*	ENST00000262160	NM_005901.5	460	tCa/tAa																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94192710	94192710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	23	360	0	ENST00000323929.3:c.1364G>T	p.Gly455Val	p.G455V	ENST00000323929	NM_005591.3	455	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577568	+	missense_variant	Missense_Mutation	ONP	TAC	TAC	GTA			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	46	541	1	ENST00000269305.4:c.713_715inv	p.Cys238_Asn239delinsLeuHis	p.C238_N239delinsLH	ENST00000269305	NM_001126112.2	238	tGTAac/tTACac																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30253848	30253848	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	68	537	0	ENST00000307677.4:c.606G>C	p.Glu202Asp	p.E202D	ENST00000307677	NM_138578.1	202	gaG/gaC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830933	72830933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	18	549	0	ENST00000268489.5:c.5648A>G	p.Lys1883Arg	p.K1883R	ENST00000268489	NM_006885.3	1883	aAa/aGa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888129	81888129	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	57	496	0	ENST00000359376.3:c.274G>C	p.Glu92Gln	p.E92Q	ENST00000359376	NM_002661.3	92	Gaa/Caa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	142	330	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0042956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	194	713	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473644	67473644	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	149	657	0	ENST00000327367.4:c.724C>T	p.Gln242Ter	p.Q242*	ENST00000327367	NM_005902.3	242	Cag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	20	747	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	68	303	0				ENST00000310581	NM_198253.2																																																																																
MDC1	9656	MSKCC	GRCh37	6	30671529	30671529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	98	727	0	ENST00000376406.3:c.5431C>T	p.Arg1811Cys	p.R1811C	ENST00000376406	NM_014641.2	1811	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0042997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	117	532	1	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578471	7578471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0042997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	184	758	0	ENST00000269305.4:c.459delC	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	153	ccC/cc																																																																														
SRC	6714	MSKCC	GRCh37	20	36012762	36012762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	24	140	0	ENST00000358208.4:c.206C>T	p.Ser69Phe	p.S69F	ENST00000358208		69	tCc/tTc																																																																														
MSI2	124540	MSKCC	GRCh37	17	55607061	55607061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	55	482	0	ENST00000284073.2:c.430G>A	p.Asp144Asn	p.D144N	ENST00000284073	NM_138962.2	144	Gat/Aat																																																																														
REL	5966	MSKCC	GRCh37	2	61148918	61148918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	22	316	0	ENST00000295025.8:c.1108G>A	p.Asp370Asn	p.D370N	ENST00000295025	NM_002908.2	370	Gat/Aat																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280738	41280738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	49	539	0	ENST00000349496.5:c.2251G>A	p.Asp751Asn	p.D751N	ENST00000349496	NM_001904.3	751	Gat/Aat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390906	139390909	+	frameshift_variant	Frame_Shift_Del	DEL	GGTG	GGTG	-			P-0043104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	96	939	0	ENST00000277541.6:c.7282_7285del	p.His2428TrpfsTer6	p.H2428Wfs*6	ENST00000277541	NM_017617.3	2428	CACCtg/tg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820587	44820593	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTTTG	TCTTTTG	-			P-0043104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	68	496	0	ENST00000377967.4:c.286_292del	p.Phe96AsnfsTer2	p.F96Nfs*2	ENST00000377967	NM_021140.2	95	tTCTTTTGt/tt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009024-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	121	314	1	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	60	868	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	130	915	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	191	582	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	191	582	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	191	582	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	696	669	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2225386	2225386	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	99	389	0	ENST00000398665.3:c.3597-1G>A		p.X1199_splice	ENST00000398665	NM_032482.2	1199																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602746	10602746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	800	804	0	ENST00000171111.5:c.832C>T	p.Pro278Ser	p.P278S	ENST00000171111	NM_203500.1	278	Ccg/Tcg																																																																														
STK11	6794	MSKCC	GRCh37	19	1220579	1220579	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			140	706	672	0	ENST00000326873.7:c.598-1G>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																															
MEF2B	100271849	MSKCC	GRCh37	19	19257570	19257570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			607	280	735	2	ENST00000162023.5:c.656G>A	p.Arg219Gln	p.R219Q	ENST00000162023		219	cGa/cAa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514650	103514650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	64	346	0	ENST00000355739.4:c.1151C>T	p.Ser384Leu	p.S384L	ENST00000355739	NM_000123.3	384	tCa/tTa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6048638	6048638	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			969	140	590	0	ENST00000265849.7:c.13G>C	p.Glu5Gln	p.E5Q	ENST00000265849	NM_000535.5	5	Gag/Cag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522726	67522726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			60	243	237	0	ENST00000274335.5:c.223G>T	p.Glu75Ter	p.E75*	ENST00000274335		75	Gaa/Taa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719181	61719181	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	38	294	0	ENST00000401558.2:c.1876C>T	p.Gln626Ter	p.Q626*	ENST00000401558	NM_003400.3	626	Cag/Tag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932930	49932930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			140	664	722	0	ENST00000296474.3:c.3014C>T	p.Ala1005Val	p.A1005V	ENST00000296474	NM_002447.2	1005	gCc/gTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325153	123325153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	102	506	0	ENST00000358487.5:c.175G>A	p.Glu59Lys	p.E59K	ENST00000358487	NM_000141.4	59	Gag/Aag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865206	57865206	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			926	193	697	0	ENST00000228682.2:c.2683G>C	p.Ala895Pro	p.A895P	ENST00000228682	NM_005269.2	895	Gct/Cct																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2221942	2222463	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTCCCCTGAGACCCCCATGTCCTTCCCGGCAGGCTTCTCCTACGCTGGCTCGGTGGCCATCAGCGGGGCCTTGGCGGGCAGCCCGGCCTCTCTCACACCTGGAGCCGAGCCGGCCACCTTGGATGAGTCCTCCAGCTCTGGGAGCCTTTTTGCCACCGTGGGGTCCCGCAGCTCCACGCCACAGCACCCCCTGCTGCTGGCACAGCCCCGGAACTCGCTTCCTGCCTCTCCCGCCCACCAGCTCTCCTCCAGTCCCCGGCTTGGTGGGGCCGCCCAGGGCCCGTTGCCCGAGGCCAGCAAGGGAGACCTGCCCTCCGATTCCGGCTTCTCAGATCCTGAGAGTGAAGCCAAGAGGAGGATTGTGTTCACCATCACCACTGGTGCGGGCAGTGCCAAGCAGTCGCCCTCCAGCAAGCACAGCCCCCTGACCGCCAGCGCCCGTGGGGACTGTGTGCCGAGCCACGGGCAGGACAGTCGCAGGCGCGGCCGGCGGAAGCGAGCATCTGCGGGGACGCCCAGCT	TGTCCCCTGAGACCCCCATGTCCTTCCCGGCAGGCTTCTCCTACGCTGGCTCGGTGGCCATCAGCGGGGCCTTGGCGGGCAGCCCGGCCTCTCTCACACCTGGAGCCGAGCCGGCCACCTTGGATGAGTCCTCCAGCTCTGGGAGCCTTTTTGCCACCGTGGGGTCCCGCAGCTCCACGCCACAGCACCCCCTGCTGCTGGCACAGCCCCGGAACTCGCTTCCTGCCTCTCCCGCCCACCAGCTCTCCTCCAGTCCCCGGCTTGGTGGGGCCGCCCAGGGCCCGTTGCCCGAGGCCAGCAAGGGAGACCTGCCCTCCGATTCCGGCTTCTCAGATCCTGAGAGTGAAGCCAAGAGGAGGATTGTGTTCACCATCACCACTGGTGCGGGCAGTGCCAAGCAGTCGCCCTCCAGCAAGCACAGCCCCCTGACCGCCAGCGCCCGTGGGGACTGTGTGCCGAGCCACGGGCAGGACAGTCGCAGGCGCGGCCGGCGGAAGCGAGCATCTGCGGGGACGCCCAGCT	-			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	186	421	0	ENST00000398665.3:c.2807-31_3297del		p.X936_splice	ENST00000398665	NM_032482.2	936																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204732699	204732699	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	111	371	0	ENST00000302823.3:c.34C>T	p.Gln12Ter	p.Q12*	ENST00000302823	NM_005214.4	12	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1294698	1294698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1222	143	543	0	ENST00000310581.5:c.303C>G	p.Phe101Leu	p.F101L	ENST00000310581	NM_198253.2	101	ttC/ttG																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31410936	31410936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	915	709	0	ENST00000344624.3:c.3584G>T	p.Gly1195Val	p.G1195V	ENST00000344624		1195	gGc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112154951	112154951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	215	543	0	ENST00000257430.4:c.1222C>T	p.His408Tyr	p.H408Y	ENST00000257430	NM_000038.5	408	Cat/Tat																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978565	70978565	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			493	480	551	0	ENST00000276594.2:c.1088T>A	p.Leu363His	p.L363H	ENST00000276594	NM_024504.3	363	cTt/cAt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87636271	87636271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			719	155	605	1	ENST00000277120.3:c.2436G>T	p.Met812Ile	p.M812I	ENST00000277120		812	atG/atT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911571	39911571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025738-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			276	165	582	0	ENST00000378444.4:c.5059G>A	p.Val1687Met	p.V1687M	ENST00000378444	NM_001123385.1	1687	Gtg/Atg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202344	138202344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	221	666	0	ENST00000237289.4:c.2261C>T	p.Pro754Leu	p.P754L	ENST00000237289	NM_001270507.1	754	cCc/cTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434842	110434842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	265	650	0	ENST00000375856.3:c.3559G>A	p.Glu1187Lys	p.E1187K	ENST00000375856	NM_003749.2	1187	Gag/Aag																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588856	69588871	+	frameshift_variant	Frame_Shift_Del	DEL	CTCACCACGCCCCGCT	CTCACCACGCCCCGCT	-			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	83	689	0	ENST00000168712.1:c.365_380del	p.Glu122AlafsTer13	p.E122Afs*13	ENST00000168712	NM_002007.2	122	gAGCGGGGCGTGGTGAGc/gc																																																																														
RB1	5925	MSKCC	GRCh37	13	49027139	49027139	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	35	367	0	ENST00000267163.4:c.1706T>A	p.Leu569Ter	p.L569*	ENST00000267163	NM_000321.2	569	tTa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578554	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTTGTTGAGGGCAGGGGAGTA	CTTGTTGAGGGCAGGGGAGTA	-			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	189	826	0	ENST00000269305.4:c.376_396del	p.Tyr126_Lys132del	p.Y126_K132del	ENST00000269305	NM_001126112.2	126	TACTCCCCTGCCCTCAACAAG/-																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11095976	11095980	+	frameshift_variant	Frame_Shift_Ins	INS	ATGTC	ATGTC	GAGGCA			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	220	841	3	ENST00000344626.4:c.250_254delinsGAGGCA	p.Met84GlufsTer45	p.M84Efs*45	ENST00000344626	NM_003072.3	84	ATGTCg/GAGGCAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919329	178919329	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0041231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	41	216	0	ENST00000263967.3:c.813+1G>C		p.X271_splice	ENST00000263967	NM_006218.2	271																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	570	947	2	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670844	134670844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	223	495	0	ENST00000398015.3:c.755G>A	p.Arg252Gln	p.R252Q	ENST00000398015	NM_004441.4	252	cGa/cAa																																																																														
RB1	5925	MSKCC	GRCh37	13	48923091	48923091	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0042708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	43	311	0	ENST00000267163.4:c.540-1G>A		p.X180_splice	ENST00000267163	NM_000321.2	180																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912120	32912120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	288	793	1	ENST00000380152.3:c.3628G>T	p.Asp1210Tyr	p.D1210Y	ENST00000380152		1210	Gat/Tat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135777994	135777994	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0042708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	285	564	0	ENST00000298552.3:c.2389del	p.Gln797ArgfsTer10	p.Q797Rfs*10	ENST00000298552	NM_001162426.1	797	Cag/ag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135802602	135802602	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	202	389	0	ENST00000298552.3:c.196G>T	p.Glu66Ter	p.E66*	ENST00000298552	NM_001162426.1	66	Gag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	113	373	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	662	636	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942745	68942745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	83	351	0	ENST00000288368.4:c.557G>A	p.Arg186Gln	p.R186Q	ENST00000288368	NM_024870.2	186	cGg/cAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020344	69020344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0042750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	77	325	0	ENST00000288368.4:c.2716T>A	p.Phe906Ile	p.F906I	ENST00000288368	NM_024870.2	906	Ttt/Att																																																																														
SDHA	6389	MSKCC	GRCh37	5	256470	256470	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3211483		P-0042750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1946	132	447	0	ENST00000264932.6:c.1930G>A	p.Val644Met	p.V644M	ENST00000264932	NM_004168.2	644	Gtg/Atg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413171	139413172	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0042859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	181	1218	0	ENST00000277541.6:c.970_971delGT	p.Val324GlnfsTer6	p.V324Qfs*6	ENST00000277541	NM_017617.3	324	GTc/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	171	1039	0	ENST00000269305.4:c.281C>A	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692805	89692805	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	73	394	0	ENST00000371953.3:c.289C>T	p.Gln97Ter	p.Q97*	ENST00000371953	NM_000314.4	97	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426373	49426373	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	157	1286	0	ENST00000301067.7:c.12115G>T	p.Glu4039Ter	p.E4039*	ENST00000301067	NM_003482.3	4039	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445784	49445784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0042859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	282	1346	0	ENST00000301067.7:c.1682T>A	p.Leu561Ter	p.L561*	ENST00000301067	NM_003482.3	561	tTg/tAg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698112	47698112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	22	421	0	ENST00000233146.2:c.1670C>T	p.Thr557Ile	p.T557I	ENST00000233146	NM_000251.2	557	aCt/aTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521052	187521052	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0042859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	84	467	0	ENST00000441802.2:c.12103G>T	p.Gly4035Cys	p.G4035C	ENST00000441802	NM_005245.3	4035	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			612	307	279	0	ENST00000269305.4:c.843C>A	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaA																																																																														
AR	367	MSKCC	GRCh37	X	66765173	66765173	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			323	18	99	1	ENST00000374690.3:c.185A>T	p.Gln62Leu	p.Q62L	ENST00000374690	NM_000044.3	62	cAg/cTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272105	15272105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			702	138	263	0	ENST00000263388.2:c.6334G>A	p.Gly2112Ser	p.G2112S	ENST00000263388	NM_000435.2	2112	Ggt/Agt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729399	41729399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			723	134	172	0	ENST00000242208.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000242208	NM_002192.2	377	cGc/cAc																																																																														
PGR	5241	MSKCC	GRCh37	11	100933337	100933337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			774	124	176	0	ENST00000325455.5:c.2053C>T	p.Pro685Ser	p.P685S	ENST00000325455	NM_001202474.3	685	Cca/Tca																																																																														
EZH1	2145	MSKCC	GRCh37	17	40872362	40872362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			758	138	246	0	ENST00000428826.2:c.593C>T	p.Ser198Leu	p.S198L	ENST00000428826		198	tCa/tTa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998189	169998189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			701	92	152	0	ENST00000295797.4:c.880G>C	p.Glu294Gln	p.E294Q	ENST00000295797	NM_002740.5	294	Gag/Cag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934144	39934144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			780	123	217	0	ENST00000378444.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000378444	NM_001123385.1	152	cCg/cTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123324067	123324067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			609	100	153	0	ENST00000358487.5:c.403G>T	p.Asp135Tyr	p.D135Y	ENST00000358487	NM_000141.4	135	Gat/Tat																																																																														
CUL3	8452	MSKCC	GRCh37	2	225370674	225370674	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			282	41	112	0	ENST00000264414.4:c.1205G>A	p.Gly402Glu	p.G402E	ENST00000264414	NM_003590.4	402	gGg/gAg																																																																														
FYN	2534	MSKCC	GRCh37	6	112024096	112024096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			483	95	152	0	ENST00000368678.4:c.689A>T	p.His230Leu	p.H230L	ENST00000368678		230	cAt/cTt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115280684	115280685	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			485	132	157	0	ENST00000438362.2:c.346dup	p.Glu116GlyfsTer3	p.E116Gfs*3	ENST00000438362	NM_001242891.1	116	gaa/gGaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720850	89720872	+	frameshift_variant	Frame_Shift_Del	DEL	ACCGATACTTTTCTCCAAATTTT	ACCGATACTTTTCTCCAAATTTT	-			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			481	54	129	0	ENST00000371953.3:c.1002_1024del	p.Asn334LysfsTer19	p.N334Kfs*19	ENST00000371953	NM_000314.4	334	aACCGATACTTTTCTCCAAATTTT/a																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426682	49426682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022380-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			339	63	150	0	ENST00000301067.7:c.11806C>T	p.Gln3936Ter	p.Q3936*	ENST00000301067	NM_003482.3	3936	Cag/Tag																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036557-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			680	9207	734	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036557-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	675	1023	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061098	38061098	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036557-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	118	379	0	ENST00000250448.2:c.891del	p.Ser298LeufsTer23	p.S298Lfs*23	ENST00000250448	NM_004496.3	297	ccC/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845939	72845941	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TAA	TAA	-			P-0036557-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			97	189	423	0	ENST00000268489.5:c.3530-4_3530-2del		p.X1177_splice	ENST00000268489	NM_006885.3	1177																																																																															
TCF3	6929	MSKCC	GRCh37	19	1619356	1619366	+	frameshift_variant	Frame_Shift_Del	DEL	AACCTGAGGCC	AACCTGAGGCC	-			P-0036557-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	295	1218	0	ENST00000344749.5:c.1275_1285del	p.Ala426HisfsTer45	p.A426Hfs*45	ENST00000344749	NM_001136139.2	425	ctGGCCTCAGGTTtc/cttc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274548	198274548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	152	783	1	ENST00000335508.6:c.850G>T	p.Ala284Ser	p.A284S	ENST00000335508	NM_012433.2	284	Gca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	246	1008	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	276	821	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
MST1	4485	MSKCC	GRCh37	3	49722906	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0042643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	10	244	1	ENST00000449682.2:c.1421del	p.Pro474GlnfsTer52	p.P474Qfs*52	ENST00000449682	NM_020998.3	474	cCa/ca																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619057	37619057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	58	898	0	ENST00000447079.4:c.733G>T	p.Asp245Tyr	p.D245Y	ENST00000447079	NM_015083.1	245	Gat/Tat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38957774	38957774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004234-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			74	39	219	0	ENST00000357387.3:c.2479C>T	p.Gln827Ter	p.Q827*	ENST00000357387	NM_152756.3	827	Caa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374576	118374576	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012132-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			220	90	457	0	ENST00000534358.1:c.7969A>C	p.Lys2657Gln	p.K2657Q	ENST00000534358	NM_005933.3	2657	Aag/Cag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245513	46245513	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012132-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			211	95	368	0	ENST00000334344.6:c.3607A>G	p.Met1203Val	p.M1203V	ENST00000334344	NM_152641.2	1203	Atg/Gtg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012132-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			65	62	263	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148516743	148516743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012132-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			198	79	432	0	ENST00000320356.2:c.944A>G	p.Asn315Ser	p.N315S	ENST00000320356	NM_004456.4	315	aAc/aGc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121588	2121596	+	frameshift_variant	Frame_Shift_Ins	INS	GTTCAGCCC	GTTCAGCCC	ACTACATGTACGCA			P-0012132-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			560	249	1074	0	ENST00000219476.3:c.1917_1925delinsACTACATGTACGCA	p.Phe640LeufsTer60	p.F640Lfs*60	ENST00000219476	NM_000548.3	639	cgGTTCAGCCCc/cgACTACATGTACGCAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	246	454	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609674	117609674	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	125	447	0	ENST00000368508.3:c.7025A>G	p.Tyr2342Cys	p.Y2342C	ENST00000368508	NM_002944.2	2342	tAt/tGt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	86	256	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061102	38061121	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTTGCGGCTCTCAGGGCC	TCCTTGCGGCTCTCAGGGCC	G			P-0042494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	30	210	0	ENST00000250448.2:c.868_887delinsC	p.Gly290ProfsTer25	p.G290Pfs*25	ENST00000250448	NM_004496.3	290	GGCCCTGAGAGCCGCAAGGAc/Cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	194	307	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	363	542	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	340	667	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	254	390	1	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	254	390	1	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	254	390	1	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951994	178951994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	200	406	0	ENST00000263967.3:c.3049G>C	p.Asp1017His	p.D1017H	ENST00000263967	NM_006218.2	1017	Gat/Cat																																																																														
ATRX	546	MSKCC	GRCh37	X	76938562	76938562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	276	230	0	ENST00000373344.5:c.2186C>T	p.Ser729Leu	p.S729L	ENST00000373344	NM_000489.3	729	tCa/tTa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135796771	135796771	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	134	317	0	ENST00000298552.3:c.716A>T	p.Asp239Val	p.D239V	ENST00000298552	NM_001162426.1	239	gAc/gTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781932	3781932	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	184	427	0	ENST00000262367.5:c.4735C>T	p.Gln1579Ter	p.Q1579*	ENST00000262367	NM_004380.2	1579	Cag/Tag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982105	201982105	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	407	791	0	ENST00000359651.3:c.629C>G	p.Ser210Ter	p.S210*	ENST00000359651		210	tCa/tGa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69103963	69103963	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	228	499	0	ENST00000288368.4:c.4353C>G	p.Phe1451Leu	p.F1451L	ENST00000288368	NM_024870.2	1451	ttC/ttG																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260668	16260668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	323	674	0	ENST00000375759.3:c.7933C>G	p.Gln2645Glu	p.Q2645E	ENST00000375759	NM_015001.2	2645	Caa/Gaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445764	49445764	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	565	1060	1	ENST00000301067.7:c.1702G>T	p.Glu568Ter	p.E568*	ENST00000301067	NM_003482.3	568	Gaa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15942901	15942901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	264	481	0	ENST00000268712.3:c.6801C>G	p.Ile2267Met	p.I2267M	ENST00000268712	NM_006311.3	2267	atC/atG																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554045	63554045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	289	572	0	ENST00000307078.5:c.694G>C	p.Glu232Gln	p.E232Q	ENST00000307078	NM_004655.3	232	Gag/Cag																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733084	74733084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	341	610	0	ENST00000359995.5:c.159G>T	p.Glu53Asp	p.E53D	ENST00000359995	NM_001195427.1	53	gaG/gaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288904	212288904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	163	315	0	ENST00000342788.4:c.2842G>T	p.Asp948Tyr	p.D948Y	ENST00000342788	NM_005235.2	948	Gac/Tac																																																																														
BARD1	580	MSKCC	GRCh37	2	215632287	215632287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	246	571	0	ENST00000260947.4:c.1487C>T	p.Ser496Leu	p.S496L	ENST00000260947	NM_000465.2	496	tCa/tTa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402488	20402488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	290	628	0	ENST00000346618.3:c.25C>G	p.Leu9Val	p.L9V	ENST00000346618	NM_001949.4	9	Ctg/Gtg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6043343	6043343	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	163	366	0	ENST00000265849.7:c.331C>G	p.Leu111Val	p.L111V	ENST00000265849	NM_000535.5	111	Ctg/Gtg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44911033	44911034	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0042502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	155	209	0	ENST00000377967.4:c.735_736del	p.Leu246ThrfsTer16	p.L246Tfs*16	ENST00000377967	NM_021140.2	245	gTC/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0042505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	30	324	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	42	379	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0042505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	45	443	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	85	752	1	ENST00000396946.4:c.1663C>T	p.Arg555Trp	p.R555W	ENST00000396946	NM_032415.4	555	Cgg/Tgg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	47	567	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578201	7578202	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	117	721	0	ENST00000269305.4:c.647_648del	p.Val216GlyfsTer5	p.V216Gfs*5	ENST00000269305	NM_001126112.2	216	gTG/g																																																																														
KDM5A	5927	MSKCC	GRCh37	12	459813	459813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	44	676	1	ENST00000399788.2:c.1282C>T	p.Arg428Trp	p.R428W	ENST00000399788	NM_001042603.1	428	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112176030	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	35	300	0	ENST00000257430.4:c.4741delT	p.Ser1581LeufsTer69	p.S1581Lfs*69	ENST00000257430	NM_000038.5	1580	aTt/at																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619835	1619835	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	158	985	0	ENST00000344749.5:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000344749	NM_001136139.2	371	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173387	112173387	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	30	307	0	ENST00000257430.4:c.2096G>A	p.Trp699Ter	p.W699*	ENST00000257430	NM_000038.5	699	tGg/tAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591911	48591911	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	47	440	0	ENST00000342988.3:c.1074del	p.Gly359GlufsTer25	p.G359Efs*25	ENST00000342988	NM_005359.5	358	ggA/gg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	392	800	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0042672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	95	536	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99491813	99491813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	47	570	1	ENST00000268035.6:c.3598G>A	p.Val1200Ile	p.V1200I	ENST00000268035	NM_000875.3	1200	Gtc/Atc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0042673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	28	498	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040640	47040640	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	106	843	1	ENST00000329236.7:c.1041G>A	p.Trp347Ter	p.W347*	ENST00000329236	NM_001204466.1	347	tgG/tgA																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240974	53240974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	105	585	1	ENST00000375401.3:c.1237G>A	p.Val413Met	p.V413M	ENST00000375401	NM_004187.3	413	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0042676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	11	215	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0042676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	16	191	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	61	816	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	8	315	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1380	283	884	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717699	89717699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	101	539	0	ENST00000371953.3:c.724G>T	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	242	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	176	632	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0042589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	97	405	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			113	184	668	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133202720	133202720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			156	68	469	0	ENST00000320574.5:c.6514G>C	p.Asp2172His	p.D2172H	ENST00000320574	NM_006231.2	2172	Gac/Cac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857152	9857152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			252	150	352	0	ENST00000330684.3:c.4249C>T	p.Arg1417Trp	p.R1417W	ENST00000330684	NM_001134407.1	1417	Cgg/Tgg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200270	67200270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201348433		P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			249	100	584	0	ENST00000312629.5:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000312629	NM_003952.2	193	cGg/cAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259348	11259348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			180	72	532	0	ENST00000361445.4:c.4220G>T	p.Gly1407Val	p.G1407V	ENST00000361445	NM_004958.3	1407	gGc/gTc																																																																														
PARP1	142	MSKCC	GRCh37	1	226552770	226552770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			268	89	515	0	ENST00000366794.5:c.2591C>T	p.Ser864Phe	p.S864F	ENST00000366794	NM_001618.3	864	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212490	5212490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			183	64	520	1	ENST00000357368.4:c.4627G>A	p.Glu1543Lys	p.E1543K	ENST00000357368	NM_002850.3	1543	Gag/Aag																																																																														
ERF	2077	MSKCC	GRCh37	19	42753057	42753057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			345	43	662	0	ENST00000222329.4:c.1207G>A	p.Gly403Ser	p.G403S	ENST00000222329	NM_006494.2	403	Ggt/Agt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242800919	242800919	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			344	97	670	0	ENST00000334409.5:c.72C>G	p.Phe24Leu	p.F24L	ENST00000334409	NM_005018.2	24	ttC/ttG																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024761	31024761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			171	91	473	0	ENST00000375687.4:c.4246G>A	p.Glu1416Lys	p.E1416K	ENST00000375687	NM_015338.5	1416	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385172	41385172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			617	93	661	0	ENST00000373198.4:c.789C>G	p.Ser263Arg	p.S263R	ENST00000373198	NM_133170.3	263	agC/agG																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430884	181430884	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			544	67	807	0	ENST00000325404.1:c.736T>G	p.Ser246Ala	p.S246A	ENST00000325404	NM_003106.3	246	Tcc/Gcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120536	94120536	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			164	79	309	0	ENST00000369303.4:c.515G>C	p.Arg172Thr	p.R172T	ENST00000369303	NM_004440.3	172	aGa/aCa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117700262	117700262	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			282	87	415	0	ENST00000368508.3:c.2557C>G	p.Gln853Glu	p.Q853E	ENST00000368508	NM_002944.2	853	Caa/Gaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012394	152012394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			206	48	248	0	ENST00000262189.6:c.419G>A	p.Gly140Glu	p.G140E	ENST00000262189	NM_170606.2	140	gGg/gAg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87339256	87339256	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			205	79	360	0	ENST00000277120.3:c.838A>T	p.Asn280Tyr	p.N280Y	ENST00000277120		280	Aac/Tac																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781236	135781236	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			162	103	548	0	ENST00000298552.3:c.1729G>T	p.Glu577Ter	p.E577*	ENST00000298552	NM_001162426.1	577	Gag/Tag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399990	139399990	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019351-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			352	25	700	0	ENST00000277541.6:c.4358A>G	p.Glu1453Gly	p.E1453G	ENST00000277541	NM_017617.3	1453	gAg/gGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028850	47028850	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			563	206	647	0	ENST00000329236.7:c.154G>T	p.Glu52Ter	p.E52*	ENST00000329236	NM_001204466.1	52	Gag/Tag																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			559	142	456	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589753	69589753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			77	15	33	0	ENST00000168712.1:c.100G>A	p.Ala34Thr	p.A34T	ENST00000168712	NM_002007.2	34	Gca/Aca																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797837	45797837	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			594	149	446	0	ENST00000372115.3:c.891+1G>T		p.X297_splice	ENST00000372115	NM_001048171.1	297																																																																															
GLI1	2735	MSKCC	GRCh37	12	57865301	57865301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			712	161	630	1	ENST00000228682.2:c.2778G>T	p.Gln926His	p.Q926H	ENST00000228682	NM_005269.2	926	caG/caT																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979548	7979548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			650	187	485	0	ENST00000319144.4:c.1477C>A	p.Leu493Met	p.L493M	ENST00000319144	NM_001139.2	493	Ctg/Atg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271765	15271765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			685	221	670	1	ENST00000263388.2:c.6674G>T	p.Gly2225Val	p.G2225V	ENST00000263388	NM_000435.2	2225	gGg/gTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942204	17942204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			433	94	399	0	ENST00000458235.1:c.2811G>A	p.Met937Ile	p.M937I	ENST00000458235	NM_000215.3	937	atG/atA																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607814	46607814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			750	219	671	0	ENST00000263734.3:c.2003G>T	p.Gly668Val	p.G668V	ENST00000263734	NM_001430.4	668	gGg/gTg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198272801	198272801	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			764	75	425	0	ENST00000335508.6:c.1160G>C	p.Arg387Pro	p.R387P	ENST00000335508	NM_012433.2	387	cGg/cCg																																																																														
BARD1	580	MSKCC	GRCh37	2	215595233	215595233	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			337	65	193	0	ENST00000260947.4:c.1904-1G>T		p.X635_splice	ENST00000260947	NM_000465.2	635																																																																															
BARD1	580	MSKCC	GRCh37	2	215645583	215645583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			618	172	526	0	ENST00000260947.4:c.1015A>G	p.Ser339Gly	p.S339G	ENST00000260947	NM_000465.2	339	Agc/Ggc																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73047250	73047250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			516	139	325	0	ENST00000356692.5:c.57G>T	p.Lys19Asn	p.K19N	ENST00000356692		19	aaG/aaT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217108	66217108	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			406	141	256	0	ENST00000273854.3:c.2507G>A	p.Arg836Lys	p.R836K	ENST00000273854	NM_004439.5	836	aGg/aAg																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225697	26225697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			672	178	465	0	ENST00000360408.1:c.315C>A	p.Phe105Leu	p.F105L	ENST00000360408	NM_003532.2	105	ttC/ttA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956635	93956635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			526	57	282	0	ENST00000369303.4:c.2601G>T	p.Gln867His	p.Q867H	ENST00000369303	NM_004440.3	867	caG/caT																																																																														
AGO2	27161	MSKCC	GRCh37	8	141567234	141567234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020966-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			826	124	699	0	ENST00000220592.5:c.980G>T	p.Cys327Phe	p.C327F	ENST00000220592	NM_012154.3	327	tGt/tTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	158	460	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			64	225	709	5	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112174490	112174493	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-	rs1267727476		P-0034191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	110	330	0	ENST00000257430.4:c.3202_3205del	p.Ser1068GlyfsTer57	p.S1068Gfs*57	ENST00000257430	NM_000038.5	1067	CAATca/ca																																																																														
APC	324	MSKCC	GRCh37	5	112175650	112175651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	154	388	1	ENST00000257430.4:c.4364dup	p.Asn1455LysfsTer2	p.N1455Kfs*2	ENST00000257430	NM_000038.5	1453	-/A																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112283	115112283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			66	64	115	0	ENST00000257566.3:c.1457C>T	p.Thr486Met	p.T486M	ENST00000257566	NM_016569.3	486	aCg/aTg																																																																														
RB1	5925	MSKCC	GRCh37	13	49039183	49039183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	171	418	0	ENST00000267163.4:c.2261T>C	p.Val754Ala	p.V754A	ENST00000267163	NM_000321.2	754	gTa/gCa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222371	2222371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	370	905	0	ENST00000326181.6:c.655C>T	p.Arg219Trp	p.R219W	ENST00000326181	NM_032271.2	219	Cgg/Tgg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732923	30732924	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTGTGTGAGACGTTGACTGAGTGCTGGGACCAC			P-0034191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	77	305	0	ENST00000359013.4:c.1613_1645dup	p.Val538_His548dup	p.V538_H548dup	ENST00000359013	NM_001024847.2	538	-/GTGTGTGAGACGTTGACTGAGTGCTGGGACCAC																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348131	348131	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	223	1006	0	ENST00000262320.3:c.1375C>G	p.Leu459Val	p.L459V	ENST00000262320	NM_003502.3	459	Ctc/Gtc																																																																														
CASP8	841	MSKCC	GRCh37	2	202137387	202137389	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0034191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	137	404	0	ENST00000358485.4:c.616_618del	p.Glu206del	p.E206del	ENST00000358485	NM_001080125.1	205	atGGAg/atg																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0034774-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			337	209	161	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175529	112175530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTAA			P-0034774-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			282	105	258	0	ENST00000257430.4:c.4240_4244dupGTAAG	p.Ser1415ArgfsTer2	p.S1415Rfs*2	ENST00000257430	NM_000038.5	1413	atg/atGGTAAg																																																																														
APC	324	MSKCC	GRCh37	5	112170720	112170720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	360	381	3	ENST00000257430.4:c.1816A>G	p.Ile606Val	p.I606V	ENST00000257430	NM_000038.5	606	Ata/Gta																																																																														
BRCA2	675	MSKCC	GRCh37	13	32936792	32936792	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0042332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	91	348	0	ENST00000380152.3:c.7939del	p.Leu2647Ter	p.L2647*	ENST00000380152		2646	tgC/tg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741583	145741583	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	340	723	0	ENST00000428558.2:c.920C>G	p.Pro307Arg	p.P307R	ENST00000428558	NM_004260.3	307	cCa/cGa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	76	255	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028615	12028615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	60	260	0	ENST00000353533.5:c.818A>G	p.Glu273Gly	p.E273G	ENST00000353533	NM_003010.3	273	gAa/gGa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041743	42041743	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	58	290	0	ENST00000219905.7:c.5938G>T	p.Glu1980Ter	p.E1980*	ENST00000219905	NM_001164273.1	1980	Gaa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47143009	47143010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	93	372	0	ENST00000409792.3:c.4953dup	p.Thr1652TyrfsTer14	p.T1652Yfs*14	ENST00000409792	NM_014159.6	1651	-/T																																																																														
IRF4	3662	MSKCC	GRCh37	6	397186	397186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	82	314	0	ENST00000380956.4:c.571C>T	p.Pro191Ser	p.P191S	ENST00000380956	NM_001195286.1	191	Ccg/Tcg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488669	212488669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	87	318	0	ENST00000342788.4:c.2180G>T	p.Gly727Val	p.G727V	ENST00000342788	NM_005235.2	727	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574029	7574029	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	78	468	0	ENST00000269305.4:c.998G>C	p.Arg333Pro	p.R333P	ENST00000269305	NM_001126112.2	333	cGt/cCt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184591	11184591	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	95	499	0	ENST00000361445.4:c.6626T>A	p.Leu2209Gln	p.L2209Q	ENST00000361445	NM_004958.3	2209	cTg/cAg																																																																														
PARP1	142	MSKCC	GRCh37	1	226564839	226564839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	77	423	0	ENST00000366794.5:c.1911G>T	p.Lys637Asn	p.K637N	ENST00000366794	NM_001618.3	637	aaG/aaT																																																																														
PALB2	79728	MSKCC	GRCh37	16	23635391	23635391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	93	356	1	ENST00000261584.4:c.2773G>T	p.Val925Leu	p.V925L	ENST00000261584	NM_024675.3	925	Gtg/Ttg																																																																														
ATR	545	MSKCC	GRCh37	3	142281586	142281586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	83	388	0	ENST00000350721.4:c.658G>C	p.Val220Leu	p.V220L	ENST00000350721	NM_001184.3	220	Gtg/Ctg																																																																														
TP63	8626	MSKCC	GRCh37	3	189586499	189586499	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	67	300	0	ENST00000264731.3:c.1123A>T	p.Lys375Ter	p.K375*	ENST00000264731	NM_003722.4	375	Aag/Tag																																																																														
PARK2	5071	MSKCC	GRCh37	6	161990445	161990446	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	AA			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	49	332	1	ENST00000366898.1:c.874_875delinsTT	p.Gly292Phe	p.G292F	ENST00000366898	NM_004562.2	292	GGc/TTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55240743	55240743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	151	678	0	ENST00000275493.2:c.1987G>T	p.Gly663Trp	p.G663W	ENST00000275493	NM_005228.3	663	Ggg/Tgg																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15821821	15821821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	21	198	0	ENST00000307771.7:c.214C>A	p.His72Asn	p.H72N	ENST00000307771	NM_005089.3	72	Cat/Aat																																																																														
MED12	9968	MSKCC	GRCh37	X	70344227	70344228	+	missense_variant	Missense_Mutation	DNP	AG	AG	CT			P-0042419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	39	220	0	ENST00000374080.3:c.1963_1964inv	p.Ser655Leu	p.S655L	ENST00000374080		655	AGc/CTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	138	626	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411624	63411624	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	169	726	0	ENST00000330258.3:c.1543C>G	p.Leu515Val	p.L515V	ENST00000330258	NM_152424.3	515	Ctt/Gtt																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14303205	14303205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	93	560	0	ENST00000256196.4:c.470C>T	p.Ser157Leu	p.S157L	ENST00000256196		157	tCa/tTa																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	50	851	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
RB1	5925	MSKCC	GRCh37	13	49037877	49037877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	14	141	0	ENST00000267163.4:c.2117G>T	p.Cys706Phe	p.C706F	ENST00000267163	NM_000321.2	706	tGt/tTt																																																																														
C1orf147	0	MSKCC	GRCh37	1	206666391	206666391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	43	557	0	ENST00000367119.1:c.143A>G	p.Asn48Ser	p.N48S	ENST00000367119		48	aAc/aGc																																																																														
RB1	5925	MSKCC	GRCh37	13	48878124	48878124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	11	31	0	ENST00000267163.4:c.76C>T	p.Pro26Ser	p.P26S	ENST00000267163	NM_000321.2	26	Ccg/Tcg																																																																														
RB1	5925	MSKCC	GRCh37	13	48916829	48916829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	21	145	0	ENST00000267163.4:c.359T>C	p.Leu120Pro	p.L120P	ENST00000267163	NM_000321.2	120	cTa/cCa																																																																														
MAX	4149	MSKCC	GRCh37	14	65560448	65560448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	33	263	0	ENST00000358664.4:c.149T>A	p.Val50Asp	p.V50D	ENST00000358664	NM_002382.4	50	gTc/gAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798753	135798753	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	36	158	0	ENST00000298552.3:c.490T>A	p.Trp164Arg	p.W164R	ENST00000298552	NM_001162426.1	164	Tgg/Agg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593602	55593605	+	protein_altering_variant	In_Frame_Del	DEL	GTGG	GTGG	A			P-0042549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	72	198	0	ENST00000288135.5:c.1668_1671delinsA	p.Trp557del	p.W557del	ENST00000288135	NM_000222.2	556	caGTGG/caA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0042558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	134	496	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	214	677	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622061	1622061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1230	103	986	0	ENST00000344749.5:c.814G>A	p.Glu272Lys	p.E272K	ENST00000344749	NM_001136139.2	272	Gag/Aag																																																																														
AKT2	208	MSKCC	GRCh37	19	40762959	40762959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036501-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			905	204	529	0	ENST00000392038.2:c.49G>A	p.Glu17Lys	p.E17K	ENST00000392038	NM_001626.4	17	Gaa/Aaa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911194	29911201	+	frameshift_variant	Frame_Shift_Del	DEL	CAGATCAC	CAGATCAC	-			P-0036501-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	344	659	0	ENST00000376809.5:c.495_502del	p.Ile166AlafsTer8	p.I166Afs*8	ENST00000376809	NM_002116.7	165	CAGATCACc/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040160-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	419	650	0	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134494	30134494	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040160-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	59	265	1	ENST00000263025.4:c.37G>T	p.Glu13Ter	p.E13*	ENST00000263025	NM_002746.2	13	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416376	49416376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040160-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	49	401	1	ENST00000301067.7:c.16335G>T	p.Glu5445Asp	p.E5445D	ENST00000301067	NM_003482.3	5445	gaG/gaT																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661970	227662245	+	inframe_deletion	In_Frame_Del	DEL	GGTGCAGCGGTGGCCATTGCCACCCCGAGACAAAATGTAGTGACCGTTGGGGGCGGTCAGGGTGGAGGGCCCCTTGCCACCCATGCAGATATAGTTGCTTAGCTCCTCCTCACCGCGGGCTGGTGGGGTGTGGCCCAGGGAATCCGGAGTGACACTGCGGAAGGAACTCCGGAAATCGCAGGGACTGGAGCCATACTCATCCGAGGAGATGAAACCGCCATCGCTGGGGGAACCAGACACCGAAGCACTAGATCGCCGTGGGAAGAGACAATCCGA	GGTGCAGCGGTGGCCATTGCCACCCCGAGACAAAATGTAGTGACCGTTGGGGGCGGTCAGGGTGGAGGGCCCCTTGCCACCCATGCAGATATAGTTGCTTAGCTCCTCCTCACCGCGGGCTGGTGGGGTGTGGCCCAGGGAATCCGGAGTGACACTGCGGAAGGAACTCCGGAAATCGCAGGGACTGGAGCCATACTCATCCGAGGAGATGAAACCGCCATCGCTGGGGGAACCAGACACCGAAGCACTAGATCGCCGTGGGAAGAGACAATCCGA	-			P-0040160-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			694	65	640	0	ENST00000305123.5:c.1210_1485del	p.Ser404_Thr495del	p.S404_T495del	ENST00000305123	NM_005544.2	404	TCGGATTGTCTCTTCCCACGGCGATCTAGTGCTTCGGTGTCTGGTTCCCCCAGCGATGGCGGTTTCATCTCCTCGGATGAGTATGGCTCCAGTCCCTGCGATTTCCGGAGTTCCTTCCGCAGTGTCACTCCGGATTCCCTGGGCCACACCCCACCAGCCCGCGGTGAGGAGGAGCTAAGCAACTATATCTGCATGGGTGGCAAGGGGCCCTCCACCCTGACCGCCCCCAACGGTCACTACATTTTGTCTCGGGGTGGCAATGGCCACCGCTGCACC/-																																																																														
BRAF	673	MSKCC	GRCh37	7	140549937	140549937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040160-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			720	51	357	0	ENST00000288602.6:c.214C>T	p.His72Tyr	p.H72Y	ENST00000288602	NM_004333.4	72	Cat/Tat																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38186916	38186916	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040160-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	115	430	0	ENST00000317025.8:c.1561C>T	p.Gln521Ter	p.Q521*	ENST00000317025	NM_023034.1	521	Caa/Taa																																																																														
LYN	4067	MSKCC	GRCh37	8	56922622	56922622	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62515392		P-0040160-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			687	70	454	0	ENST00000519728.1:c.1492G>A	p.Asp498Asn	p.D498N	ENST00000519728	NM_002350.3	498	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514503	41514509	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAACC	GTGAACC	ATTAA			P-0040160-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			633	68	390	1	ENST00000373198.4:c.152_158delinsTTAAT	p.Gly51ValfsTer7	p.G51Vfs*7	ENST00000373198	NM_133170.3	51	gGGTTCACc/gTTAATc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042240-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	69	485	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ATR	545	MSKCC	GRCh37	3	142297500	142297500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042240-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	63	785	0	ENST00000350721.4:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000350721	NM_001184.3	16	cGg/cAg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731112	162731112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042240-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			713	129	653	0	ENST00000367921.3:c.967G>T	p.Val323Phe	p.V323F	ENST00000367921	NM_006182.2	323	Gtc/Ttc																																																																														
ATM	472	MSKCC	GRCh37	11	108143263	108143263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042240-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	23	142	0	ENST00000278616.4:c.3082C>G	p.Leu1028Val	p.L1028V	ENST00000278616	NM_000051.3	1028	Cta/Gta																																																																														
EP300	2033	MSKCC	GRCh37	22	41564743	41564748	+	inframe_deletion	In_Frame_Del	DEL	GATGGC	GATGGC	-			P-0042240-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			831	64	834	0	ENST00000263253.7:c.4044_4049del	p.Met1349_Ala1350del	p.M1349_A1350del	ENST00000263253	NM_001429.3	1348	gaGATGGCa/gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	178	720	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279631	123279866	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGGCATTTGCCGGCAGTCCGGCTTGGAGGATGGGCCGGTGAGGCGATCGCTCTGGTGGAGAGAGGGAAGAAAGGAGGAGTGGGGATGGGAGAATGAGAGACCAATAAATAAGCTGTGTTGTCCAGAGGGCTGTCAGTGACCTCATGCCAGAAAAGCCTCAAGCCTGCTGGCTGACACCTTTGAAATAACACTGTGGCCCCATGAATAACAGAAACGACTTCAAAGGAGACTGCC	GGAGGCATTTGCCGGCAGTCCGGCTTGGAGGATGGGCCGGTGAGGCGATCGCTCTGGTGGAGAGAGGGAAGAAAGGAGGAGTGGGGATGGGAGAATGAGAGACCAATAAATAAGCTGTGTTGTCCAGAGGGCTGTCAGTGACCTCATGCCAGAAAAGCCTCAAGCCTGCTGGCTGACACCTTTGAAATAACACTGTGGCCCCATGAATAACAGAAACGACTTCAAAGGAGACTGCC	-			P-0021747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	250	636	0	ENST00000358487.5:c.749-183_801del		p.X250_splice	ENST00000358487	NM_000141.4	250																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214479	5214479	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	149	665	0	ENST00000357368.4:c.4507C>T	p.Gln1503Ter	p.Q1503*	ENST00000357368	NM_002850.3	1503	Cag/Tag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023640	31023640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021747-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			841	225	802	0	ENST00000375687.4:c.3125C>A	p.Pro1042Gln	p.P1042Q	ENST00000375687	NM_015338.5	1042	cCa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			118	211	1023	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	278	1289	1	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	152	425	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
RHOA	387	MSKCC	GRCh37	3	49405948	49405948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	233	786	0	ENST00000418115.1:c.190G>A	p.Glu64Lys	p.E64K	ENST00000418115	NM_001664.2	64	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692983	89692983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			97	195	637	0	ENST00000371953.3:c.467G>T	p.Gly156Val	p.G156V	ENST00000371953	NM_000314.4	156	gGg/gTg																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137525554	137525554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	195	719	0	ENST00000367739.4:c.461G>C	p.Gly154Ala	p.G154A	ENST00000367739	NM_000416.2	154	gGa/gCa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107724	30107724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	216	661	0	ENST00000331968.5:c.956A>G	p.Asn319Ser	p.N319S	ENST00000331968	NM_002742.2	319	aAc/aGc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902539	1902539	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	189	917	0	ENST00000382891.5:c.158T>C	p.Leu53Pro	p.L53P	ENST00000382891	NM_133335.3	53	cTc/cCc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876454	35876454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	168	807	0	ENST00000303115.3:c.1246C>G	p.Pro416Ala	p.P416A	ENST00000303115	NM_002185.3	416	Ccc/Gcc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922288	39922289	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0024270-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			34	132	256	0	ENST00000378444.4:c.3883_3884del	p.Leu1296PhefsTer29	p.L1296Ffs*29	ENST00000378444	NM_001123385.1	1295	AGt/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	163	526	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
INSR	3643	MSKCC	GRCh37	19	7184562	7184562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	458	656	0	ENST00000302850.5:c.739G>A	p.Asp247Asn	p.D247N	ENST00000302850	NM_000208.2	247	Gac/Aac																																																																														
RB1	5925	MSKCC	GRCh37	13	49039179	49039179	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	265	449	0	ENST00000267163.4:c.2257del	p.Ile753Ter	p.I753*	ENST00000267163	NM_000321.2	753	Ata/ta																																																																														
MGA	23269	MSKCC	GRCh37	15	42054392	42054392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	41	416	0	ENST00000219905.7:c.7576G>T	p.Ala2526Ser	p.A2526S	ENST00000219905	NM_001164273.1	2526	Gca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578400	+	inframe_deletion	In_Frame_Del	DEL	GGTGGG	GGTGGG	-			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	197	876	1	ENST00000269305.4:c.530_535del	p.Pro177_His178del	p.P177_H178del	ENST00000269305	NM_001126112.2	177	cCCCACCat/cat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630047	187630047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	168	669	0	ENST00000441802.2:c.935G>A	p.Ser312Asn	p.S312N	ENST00000441802	NM_005245.3	312	aGt/aAt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86629124	86629124	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	47	377	0	ENST00000274376.6:c.869A>C	p.Tyr290Ser	p.Y290S	ENST00000274376	NM_002890.2	290	tAc/tCc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139403359	139403359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	198	861	0	ENST00000277541.6:c.3134G>A	p.Cys1045Tyr	p.C1045Y	ENST00000277541	NM_017617.3	1045	tGc/tAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70361078	70361107	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGCAGCAGCAGCAACAGCAACAGCAGCAGC	AGCAGCAGCAGCAACAGCAACAGCAGCAGC	-			P-0009628-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			137	15	189	0	ENST00000374080.3:c.6300_6329del		p.X2100_splice	ENST00000374080		2100																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852680	63852680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009628-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	55	521	0	ENST00000279873.7:c.3458C>T	p.Ser1153Leu	p.S1153L	ENST00000279873	NM_032199.2	1153	tCa/tTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435308	18435308	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009628-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	59	342	0	ENST00000266497.5:c.293G>A	p.Trp98Ter	p.W98*	ENST00000266497		98	tGg/tAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425584	49425584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009628-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	43	828	0	ENST00000301067.7:c.12904C>T	p.Leu4302Phe	p.L4302F	ENST00000301067	NM_003482.3	4302	Ctt/Ttt																																																																														
RAD51	5888	MSKCC	GRCh37	15	41001294	41001294	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009628-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	28	425	0	ENST00000267868.3:c.415A>G	p.Thr139Ala	p.T139A	ENST00000267868	NM_002875.4	139	Acg/Gcg																																																																														
NF1	4763	MSKCC	GRCh37	17	29661889	29661889	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009628-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	62	389	0	ENST00000358273.4:c.5846T>G	p.Met1949Arg	p.M1949R	ENST00000358273	NM_001042492.2	1949	aTg/aGg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739389	145739389	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009628-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			725	53	764	0	ENST00000428558.2:c.1981G>T	p.Glu661Ter	p.E661*	ENST00000428558	NM_004260.3	661	Gag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	236	654	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	187	745	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	57	342	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033300-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	149	599	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61710176	61710177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0033300-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	68	360	0	ENST00000401558.2:c.2726_2727dup	p.Ala910LeufsTer22	p.A910Lfs*22	ENST00000401558	NM_003400.3	909	-/CT																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806092	1806092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033799-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	82	795	0	ENST00000260795.2:c.1111A>T	p.Ser371Cys	p.S371C	ENST00000260795		371	Agt/Tgt																																																																														
RHOA	387	MSKCC	GRCh37	3	49397742	49397742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552757		P-0033799-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	118	439	0	ENST00000418115.1:c.482C>T	p.Ala161Val	p.A161V	ENST00000418115	NM_001664.2	161	gCa/gTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521253	187521253	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033799-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	140	535	0	ENST00000441802.2:c.11902C>T	p.Gln3968Ter	p.Q3968*	ENST00000441802	NM_005245.3	3968	Caa/Taa																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216899	7216899	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033799-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	119	511	1	ENST00000380728.2:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000380728		208	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056181	27056181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033799-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	210	515	0	ENST00000324856.7:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000324856	NM_006015.4	393	Cag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118354897	118354897	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0033799-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	93	277	0	ENST00000534358.1:c.4087-1G>A		p.X1363_splice	ENST00000534358	NM_005933.3	1363																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3807967	3807967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033799-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	77	475	0	ENST00000262367.5:c.3452G>A	p.Trp1151Ter	p.W1151*	ENST00000262367	NM_004380.2	1151	tGg/tAg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56401603	56401603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033799-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	41	256	0	ENST00000348428.3:c.1465G>A	p.Gly489Arg	p.G489R	ENST00000348428	NM_006785.3	489	Gga/Aga																																																																														
EP300	2033	MSKCC	GRCh37	22	41513814	41513814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033799-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	140	448	1	ENST00000263253.7:c.718C>T	p.Gln240Ter	p.Q240*	ENST00000263253	NM_001429.3	240	Cag/Tag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659164	86659164	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0033799-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			49	14	49	0	ENST00000274376.6:c.1454-1G>A		p.X485_splice	ENST00000274376	NM_002890.2	485																																																																															
PIM1	5292	MSKCC	GRCh37	6	37138913	37138913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033799-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	148	517	0	ENST00000373509.5:c.253C>T	p.Arg85Ter	p.R85*	ENST00000373509	NM_002648.3	85	Cga/Tga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918645	44918646	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATGC			P-0033799-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	97	185	0	ENST00000377967.4:c.1131_1135dup	p.Thr379MetfsTer62	p.T379Mfs*62	ENST00000377967	NM_021140.2	376	-/AATGC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039522-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			175	60	445	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039522-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			310	251	841	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55597561	55597561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039522-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			218	62	541	3	ENST00000288135.5:c.2209G>A	p.Asp737Asn	p.D737N	ENST00000288135	NM_000222.2	737	Gac/Aac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374103	118374103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039522-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			335	62	515	0	ENST00000534358.1:c.7496G>T	p.Gly2499Val	p.G2499V	ENST00000534358	NM_005933.3	2499	gGa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	69	455	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220489	1220489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	100	723	0	ENST00000326873.7:c.582C>A	p.Asp194Glu	p.D194E	ENST00000326873	NM_000455.4	194	gaC/gaA																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851295	156851295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	159	819	0	ENST00000524377.1:c.2252C>A	p.Ala751Asp	p.A751D	ENST00000524377	NM_002529.3	751	gCc/gAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937624	32937624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	67	540	0	ENST00000380152.3:c.8285C>T	p.Pro2762Leu	p.P2762L	ENST00000380152		2762	cCt/cTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610601	10610602	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	111	790	0	ENST00000171111.5:c.108dup	p.Glu37Ter	p.E37*	ENST00000171111	NM_203500.1	36	-/T																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39021230	39021230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	43	295	0	ENST00000357387.3:c.106G>A	p.Asp36Asn	p.D36N	ENST00000357387	NM_152756.3	36	Gat/Aat																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316397	14316397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	19	610	0	ENST00000256196.4:c.208G>A	p.Ala70Thr	p.A70T	ENST00000256196		70	Gca/Aca																																																																														
RASA1	5921	MSKCC	GRCh37	5	86682652	86682652	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	52	263	0	ENST00000274376.6:c.2857A>C	p.Met953Leu	p.M953L	ENST00000274376	NM_002890.2	953	Atg/Ctg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932457	39932458	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0040750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	58	1004	0	ENST00000378444.4:c.2141_2142del	p.Val714AspfsTer25	p.V714Dfs*25	ENST00000378444	NM_001123385.1	714	gTG/g																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933176	39933177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	163	916	0	ENST00000378444.4:c.1422dup	p.Val476SerfsTer6	p.V476Sfs*6	ENST00000378444	NM_001123385.1	474	-/C																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918561	44918561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	46	526	0	ENST00000377967.4:c.1045del	p.His349MetfsTer10	p.H349Mfs*10	ENST00000377967	NM_021140.2	348	gaC/ga																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0042437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	207	660	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008878-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	77	551	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PGR	5241	MSKCC	GRCh37	11	100999088	100999088	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008878-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	145	1019	0	ENST00000325455.5:c.714G>C	p.Lys238Asn	p.K238N	ENST00000325455	NM_001202474.3	238	aaG/aaC																																																																														
NF1	4763	MSKCC	GRCh37	17	29576091	29576091	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008878-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	62	685	0	ENST00000358273.4:c.4064C>A	p.Ser1355Ter	p.S1355*	ENST00000358273	NM_001042492.2	1355	tCa/tAa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4123808	4123808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008878-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	48	655	0	ENST00000262948.5:c.65C>T	p.Pro22Leu	p.P22L	ENST00000262948	NM_030662.3	22	cCa/cTa																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308405	30308405	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008878-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			527	66	795	0	ENST00000262643.3:c.419T>G	p.Leu140Arg	p.L140R	ENST00000262643	NM_001238.2	140	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008878-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	80	860	0	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	98	751	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
MET	4233	MSKCC	GRCh37	7	116339566	116339566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35469582		P-0042136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	51	395	0	ENST00000397752.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000397752	NM_000245.2	143	cGa/cAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971047	21971063	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCGCGCCCCGGCCCG	AGCCGCGCCCCGGCCCG	-			P-0042136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	53	665	0	ENST00000304494.5:c.295_311del	p.Arg99GlyfsTer15	p.R99Gfs*15	ENST00000304494	NM_000077.4	99	CGGGCCGGGGCGCGGCTg/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971047	21971063	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCGCGCCCCGGCCCG	AGCCGCGCCCCGGCCCG	-			P-0042136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	53	665	0	ENST00000304494.5:c.295_311del	p.Arg99GlyfsTer15	p.R99Gfs*15	ENST00000304494	NM_000077.4	99	CGGGCCGGGGCGCGGCTg/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971047	21971063	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCGCGCCCCGGCCCG	AGCCGCGCCCCGGCCCG	-			P-0042136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	53	665	0	ENST00000304494.5:c.295_311del	p.Arg99GlyfsTer15	p.R99Gfs*15	ENST00000304494	NM_000077.4	99	CGGGCCGGGGCGCGGCTg/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	161	428	1				ENST00000310581	NM_198253.2																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	163	960	1	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	63	453	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	85	540	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	144	726	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163297	32163297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	168	1073	0	ENST00000375023.3:c.5929G>A	p.Glu1977Lys	p.E1977K	ENST00000375023	NM_004557.3	1977	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	145	644	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	183	899	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068384	26068384	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	305	219	1	ENST00000435504.4:c.106C>T	p.Gln36Ter	p.Q36*	ENST00000435504		36	Caa/Taa																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363243	40363243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	156	704	0	ENST00000397332.2:c.986C>T	p.Ser329Leu	p.S329L	ENST00000397332	NM_001033082.2	329	tCg/tTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627774	187627774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	81	669	0	ENST00000441802.2:c.3208C>T	p.Arg1070Ter	p.R1070*	ENST00000441802	NM_005245.3	1070	Cga/Tga																																																																														
KIT	3815	MSKCC	GRCh37	4	55524236	55524236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	86	690	0	ENST00000288135.5:c.55C>T	p.Arg19Cys	p.R19C	ENST00000288135	NM_000222.2	19	Cgc/Tgc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41228557	41228557	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	105	684	0	ENST00000357654.3:c.4432G>C	p.Glu1478Gln	p.E1478Q	ENST00000357654	NM_007294.3	1478	Gag/Cag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	129	839	0	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774148	56774148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	197	679	1	ENST00000337432.4:c.499G>A	p.Asp167Asn	p.D167N	ENST00000337432	NM_058216.2	167	Gat/Aat																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912158	114912158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	106	715	0	ENST00000543371.1:c.1228C>A	p.His410Asn	p.H410N	ENST00000543371	NM_001198531.1	410	Cat/Aat																																																																														
BRAF	673	MSKCC	GRCh37	7	140477861	140477861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	79	541	0	ENST00000288602.6:c.1447A>G	p.Lys483Glu	p.K483E	ENST00000288602	NM_004333.4	483	Aaa/Gaa																																																																														
BTK	695	MSKCC	GRCh37	X	100608277	100608277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	286	436	0	ENST00000308731.7:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000308731	NM_000061.2	605	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918695	44918695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	161	273	1	ENST00000377967.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000377967	NM_021140.2	393	cGa/cAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942153	81942153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	138	793	1	ENST00000359376.3:c.1690C>T	p.Arg564Trp	p.R564W	ENST00000359376	NM_002661.3	564	Cgg/Tgg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780289	9780289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201282174		P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	181	671	2	ENST00000377346.4:c.1459G>A	p.Ala487Thr	p.A487T	ENST00000377346	NM_005026.3	487	Gcc/Acc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495462	56495462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	153	781	1	ENST00000267101.3:c.3652G>A	p.Glu1218Lys	p.E1218K	ENST00000267101	NM_001982.3	1218	Gag/Aag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976499	18976499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	168	913	0	ENST00000262803.5:c.3149C>T	p.Ser1050Phe	p.S1050F	ENST00000262803	NM_002911.3	1050	tCt/tTt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135785984	135785984	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	307	817	0	ENST00000298552.3:c.1237C>T	p.Gln413Ter	p.Q413*	ENST00000298552	NM_001162426.1	413	Cag/Tag																																																																														
TET2	54790	MSKCC	GRCh37	4	106157603	106157603	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	51	400	0	ENST00000380013.4:c.2504C>G	p.Ser835Ter	p.S835*	ENST00000380013	NM_001127208.2	835	tCa/tGa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374921	149374921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	262	676	0	ENST00000360632.3:c.173C>T	p.Ser58Leu	p.S58L	ENST00000360632	NM_015472.4	58	tCg/tTg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662301	227662301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	113	900	2	ENST00000305123.5:c.1154C>T	p.Ser385Leu	p.S385L	ENST00000305123	NM_005544.2	385	tCg/tTg																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226253394	226253394	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	75	212	0	ENST00000366813.1:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000366813		56	Cag/Tag																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775794	9775794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	275	962	0	ENST00000377346.4:c.337A>G	p.Ile113Val	p.I113V	ENST00000377346	NM_005026.3	113	Atc/Gtc																																																																														
STK40	83931	MSKCC	GRCh37	1	36823935	36823935	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	107	851	0	ENST00000373129.3:c.247G>C	p.Glu83Gln	p.E83Q	ENST00000373129	NM_032017.1	83	Gag/Cag																																																																														
EZH2	2146	MSKCC	GRCh37	7	148508729	148508729	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	154	437	0	ENST00000320356.2:c.1935A>T	p.Glu645Asp	p.E645D	ENST00000320356	NM_004456.4	645	gaA/gaT																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265468	198265468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	72	496	0	ENST00000335508.6:c.2689C>T	p.Leu897Phe	p.L897F	ENST00000335508	NM_012433.2	897	Ctt/Ttt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029427	16029427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	67	305	0	ENST00000268712.3:c.1603G>A	p.Glu535Lys	p.E535K	ENST00000268712	NM_006311.3	535	Gaa/Aaa																																																																														
ID3	3399	MSKCC	GRCh37	1	23885748	23885748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	156	821	1	ENST00000374561.5:c.170G>A	p.Gly57Glu	p.G57E	ENST00000374561	NM_002167.4	57	gGa/gAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100112	27100119	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCCCA	GGGCCCCA	-			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	236	792	0	ENST00000324856.7:c.3908_3915del	p.Gly1303AlafsTer17	p.G1303Afs*17	ENST00000324856	NM_006015.4	1303	gGGGCCCCA/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105761	27105761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	68	573	0	ENST00000324856.7:c.5372C>T	p.Ser1791Leu	p.S1791L	ENST00000324856	NM_006015.4	1791	tCa/tTa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258691	115258691	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	184	442	0	ENST00000369535.4:c.91G>C	p.Glu31Gln	p.E31Q	ENST00000369535	NM_002524.4	31	Gaa/Caa																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226253406	226253406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	70	140	1	ENST00000366813.1:c.178G>A	p.Glu60Lys	p.E60K	ENST00000366813		60	Gaa/Aaa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243801039	243801039	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	44	364	0	ENST00000263826.5:c.435G>C	p.Met145Ile	p.M145I	ENST00000263826	NM_005465.4	145	atG/atC																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63759858	63759858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	66	407	0	ENST00000279873.7:c.511G>A	p.Glu171Lys	p.E171K	ENST00000279873	NM_032199.2	171	Gag/Aag																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63759861	63759861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	69	426	0	ENST00000279873.7:c.514G>A	p.Glu172Lys	p.E172K	ENST00000279873	NM_032199.2	172	Gaa/Aaa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63759933	63759933	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	86	467	0	ENST00000279873.7:c.586G>C	p.Asp196His	p.D196H	ENST00000279873	NM_032199.2	196	Gat/Cat																																																																														
CCND1	595	MSKCC	GRCh37	11	69457945	69457945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3826	1529	651	0	ENST00000227507.2:c.345G>C	p.Glu115Asp	p.E115D	ENST00000227507	NM_053056.2	115	gaG/gaC																																																																														
SESN3	143686	MSKCC	GRCh37	11	94911033	94911033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	118	638	0	ENST00000536441.1:c.1097G>A	p.Arg366Lys	p.R366K	ENST00000536441	NM_144665.3	366	aGa/aAa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94924660	94924660	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	161	869	1	ENST00000536441.1:c.250C>T	p.Gln84Ter	p.Q84*	ENST00000536441	NM_144665.3	84	Cag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352679	118352679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	238	686	0	ENST00000534358.1:c.3884G>A	p.Ser1295Asn	p.S1295N	ENST00000534358	NM_005933.3	1295	aGc/aAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375357	118375357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	75	459	0	ENST00000534358.1:c.8750C>G	p.Ser2917Cys	p.S2917C	ENST00000534358	NM_005933.3	2917	tCt/tGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377021	118377042	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCGTGATCTTGATTCTGCTT	CAGCGTGATCTTGATTCTGCTT	-			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	71	553	0	ENST00000534358.1:c.10417_10438del	p.Arg3473GlyfsTer11	p.R3473Gfs*11	ENST00000534358	NM_005933.3	3472	CAGCGTGATCTTGATTCTGCTTca/ca																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416741	416741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	165	431	1	ENST00000399788.2:c.3809C>T	p.Ser1270Phe	p.S1270F	ENST00000399788	NM_001042603.1	1270	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123683	46123683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	84	448	1	ENST00000334344.6:c.64G>A	p.Glu22Lys	p.E22K	ENST00000334344	NM_152641.2	22	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445305	49445305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	290	1036	3	ENST00000301067.7:c.2161G>A	p.Glu721Lys	p.E721K	ENST00000301067	NM_003482.3	721	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56490547	56490547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	83	628	0	ENST00000267101.3:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000267101	NM_001982.3	731	Gag/Aag																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145395	58145395	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	91	652	0	ENST00000257904.6:c.106A>T	p.Ser36Cys	p.S36C	ENST00000257904	NM_000075.3	36	Agt/Tgt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631565	28631565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	69	448	0	ENST00000241453.7:c.403G>A	p.Glu135Lys	p.E135K	ENST00000241453	NM_004119.2	135	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914937	32914937	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	162	463	0	ENST00000380152.3:c.6445A>G	p.Ile2149Val	p.I2149V	ENST00000380152		2149	Att/Gtt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30047529	30047529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	144	499	0	ENST00000331968.5:c.2472G>A	p.Met824Ile	p.M824I	ENST00000331968	NM_002742.2	824	atG/atA																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871254	35871254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	191	521	0	ENST00000216797.5:c.919G>A	p.Asp307Asn	p.D307N	ENST00000216797	NM_020529.2	307	Gac/Aac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061882	38061882	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	128	977	0	ENST00000250448.2:c.107C>G	p.Ser36Ter	p.S36*	ENST00000250448	NM_004496.3	36	tCa/tGa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43700279	43700279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	229	692	0	ENST00000382044.4:c.5608C>G	p.Arg1870Gly	p.R1870G	ENST00000382044	NM_001141980.1	1870	Cgt/Ggt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138318	2138318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	88	863	1	ENST00000219476.3:c.5251C>T	p.Arg1751Cys	p.R1751C	ENST00000219476	NM_000548.3	1751	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777996	3777996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	152	1082	0	ENST00000262367.5:c.7052C>T	p.Ser2351Phe	p.S2351F	ENST00000262367	NM_004380.2	2351	tCt/tTt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89828376	89828376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	186	658	0	ENST00000389301.3:c.2833G>T	p.Ala945Ser	p.A945S	ENST00000389301	NM_000135.2	945	Gct/Tct																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618709	37618709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	94	795	0	ENST00000447079.4:c.385G>A	p.Glu129Lys	p.E129K	ENST00000447079	NM_015083.1	129	Gaa/Aaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223095	41223095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	115	725	0	ENST00000357654.3:c.4836G>C	p.Gln1612His	p.Q1612H	ENST00000357654	NM_007294.3	1612	caG/caC																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245960	41245960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	88	801	0	ENST00000357654.3:c.1588G>A	p.Glu530Lys	p.E530K	ENST00000357654	NM_007294.3	530	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7267638	7267638	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	476	914	0	ENST00000302850.5:c.370G>C	p.Glu124Gln	p.E124Q	ENST00000302850	NM_000208.2	124	Gag/Cag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276221	15276221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	164	844	0	ENST00000263388.2:c.5773C>T	p.Leu1925Phe	p.L1925F	ENST00000263388	NM_000435.2	1925	Ctc/Ttc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17382425	17382425	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	152	858	0	ENST00000359435.4:c.305C>G	p.Ser102Ter	p.S102*	ENST00000359435	NM_001033549.1	102	tCa/tGa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976501	18976501	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	170	904	3	ENST00000262803.5:c.3151C>T	p.Gln1051Ter	p.Q1051*	ENST00000262803	NM_002911.3	1051	Cag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36217255	36217255	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	151	773	0	ENST00000222270.7:c.4003+1G>T		p.X1335_splice	ENST00000222270	NM_014727.1	1335																																																																															
ALK	238	MSKCC	GRCh37	2	30143029	30143029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	225	935	0	ENST00000389048.3:c.497T>C	p.Leu166Pro	p.L166P	ENST00000389048	NM_004304.4	166	cTc/cCc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99149956	99149956	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	108	678	0	ENST00000074304.5:c.268G>A	p.Glu90Lys	p.E90K	ENST00000074304	NM_001134224.1	90	Gag/Aag																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728529	190728529	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	159	491	0	ENST00000441310.2:c.1917T>G	p.Ile639Met	p.I639M	ENST00000441310	NM_000534.4	639	atT/atG																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274685	198274685	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	117	628	0	ENST00000335508.6:c.713G>C	p.Arg238Pro	p.R238P	ENST00000335508	NM_012433.2	238	cGt/cCt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661793	227661793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	233	943	0	ENST00000305123.5:c.1662G>A	p.Met554Ile	p.M554I	ENST00000305123	NM_005544.2	554	atG/atA																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326798	62326798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	328	1031	0	ENST00000508582.2:c.3689C>T	p.Ser1230Leu	p.S1230L	ENST00000508582		1230	tCa/tTa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130505	29130505	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	133	759	0	ENST00000328354.6:c.205C>T	p.Gln69Ter	p.Q69*	ENST00000328354	NM_007194.3	69	Cag/Tag																																																																														
EP300	2033	MSKCC	GRCh37	22	41531855	41531855	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	91	701	0	ENST00000263253.7:c.1567C>T	p.Gln523Ter	p.Q523*	ENST00000263253	NM_001429.3	523	Caa/Taa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620668	52620668	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	72	452	1	ENST00000394830.3:c.3085G>T	p.Glu1029Ter	p.E1029*	ENST00000394830	NM_018313.4	1029	Gag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52713612	52713612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	123	587	0	ENST00000394830.3:c.116C>T	p.Ser39Phe	p.S39F	ENST00000394830	NM_018313.4	39	tCc/tTc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71096164	71096164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	168	511	0	ENST00000318789.4:c.593C>T	p.Ser198Phe	p.S198F	ENST00000318789	NM_032682.5	198	tCt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921533	178921533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	65	401	0	ENST00000263967.3:c.1015C>G	p.Leu339Val	p.L339V	ENST00000263967	NM_006218.2	339	Ctt/Gtt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181386	185181386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	73	483	0	ENST00000265026.3:c.1327G>A	p.Glu443Lys	p.E443K	ENST00000265026	NM_004721.4	443	Gaa/Aaa																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186506993	186506993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	64	351	0	ENST00000323963.5:c.1159G>A	p.Asp387Asn	p.D387N	ENST00000323963		387	Gac/Aac																																																																														
KIT	3815	MSKCC	GRCh37	4	55595626	55595626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	43	371	0	ENST00000288135.5:c.2116C>T	p.Leu706Phe	p.L706F	ENST00000288135	NM_000222.2	706	Ctt/Ttt																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99850080	99850080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	134	895	0	ENST00000280892.6:c.44G>T	p.Arg15Met	p.R15M	ENST00000280892	NM_001130678.1	15	aGg/aTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106182959	106182959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	94	403	0	ENST00000380013.4:c.3998T>C	p.Met1333Thr	p.M1333T	ENST00000380013	NM_001127208.2	1333	aTg/aCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557758	187557758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	67	440	0	ENST00000441802.2:c.3953G>C	p.Gly1318Ala	p.G1318A	ENST00000441802	NM_005245.3	1318	gGa/gCa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754823	57754823	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	53	321	0	ENST00000274289.3:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000274289	NM_006622.3	123	Caa/Taa																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020917	26020917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143364138		P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	74	477	0	ENST00000357647.3:c.200C>T	p.Pro67Leu	p.P67L	ENST00000357647	NM_003529.2	67	cCt/cTt																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324136	31324136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	59	413	0	ENST00000412585.2:c.427G>A	p.Asp143Asn	p.D143N	ENST00000412585	NM_005514.6	143	Gac/Aac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166219	32166219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	164	866	0	ENST00000375023.3:c.4735G>A	p.Asp1579Asn	p.D1579N	ENST00000375023	NM_004557.3	1579	Gac/Aac																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140795	37140795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	106	612	0	ENST00000373509.5:c.631G>A	p.Glu211Lys	p.E211K	ENST00000373509	NM_002648.3	211	Gag/Aag																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997455	149997455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	119	638	0	ENST00000253339.5:c.2824G>C	p.Glu942Gln	p.E942Q	ENST00000253339		942	Gaa/Caa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742993	145742993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	108	171	0	ENST00000428558.2:c.111G>C	p.Glu37Asp	p.E37D	ENST00000428558	NM_004260.3	37	gaG/gaC																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139407925	139407925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	162	932	0	ENST00000277541.6:c.2272G>A	p.Glu758Lys	p.E758K	ENST00000277541	NM_017617.3	758	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969345	44969403	+	frameshift_variant	Frame_Shift_Del	DEL	TTTGTCACTAATGAGAGTAATTCACGAAAGACCTACATAGTACATTGCCAAGATTGTGC	TTTGTCACTAATGAGAGTAATTCACGAAAGACCTACATAGTACATTGCCAAGATTGTGC	-			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	127	250	0	ENST00000377967.4:c.4027_4085del	p.Phe1343ThrfsTer26	p.F1343Tfs*26	ENST00000377967	NM_021140.2	1343	TTTGTCACTAATGAGAGTAATTCACGAAAGACCTACATAGTACATTGCCAAGATTGTGCa/a																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152853853	152853853	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	53	151	0	ENST00000406277.2:c.711G>C	p.Gln237His	p.Q237H	ENST00000406277	NM_152274.4	237	caG/caC																																																																														
SUFU	51684	MSKCC	GRCh37	10	104352380	104352426	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACAGA	CCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACAGA	-			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	237	723	0	ENST00000369902.3:c.496_542del	p.Pro166GlyfsTer25	p.P166Gfs*25	ENST00000369902	NM_016169.3	166	CCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACAGAg/g																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49441815	49441816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	281	734	2	ENST00000301067.7:c.4168dupG	p.Ala1390GlyfsTer42	p.A1390Gfs*42	ENST00000301067	NM_003482.3	1390	gca/gGca																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371683	89371683	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	409	813	1	ENST00000301030.4:c.157G>T	p.Glu53Ter	p.E53*	ENST00000301030	NM_001256183.1	53	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	327	757	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578446	7578446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	393	824	0	ENST00000269305.4:c.484A>T	p.Ile162Phe	p.I162F	ENST00000269305	NM_001126112.2	162	Atc/Ttc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17116988	17116988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	137	713	0	ENST00000285071.4:c.1721C>A	p.Ala574Asp	p.A574D	ENST00000285071	NM_144997.5	574	gCc/gAc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25471001	25471001	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201097136		P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	383	838	2	ENST00000264709.3:c.760G>A	p.Ala254Thr	p.A254T	ENST00000264709	NM_175629.2	254	Gca/Aca																																																																														
XPO1	7514	MSKCC	GRCh37	2	61724103	61724103	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	182	421	0	ENST00000401558.2:c.799T>C	p.Cys267Arg	p.C267R	ENST00000401558	NM_003400.3	267	Tgc/Cgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541001	187541001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	202	465	0	ENST00000441802.2:c.6739C>T	p.His2247Tyr	p.H2247Y	ENST00000441802	NM_005245.3	2247	Cac/Tac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541526	187541526	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	235	505	0	ENST00000441802.2:c.6214G>T	p.Glu2072Ter	p.E2072*	ENST00000441802	NM_005245.3	2072	Gaa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86629108	86629108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	44	366	0	ENST00000274376.6:c.853C>G	p.Arg285Gly	p.R285G	ENST00000274376	NM_002890.2	285	Cga/Gga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157525044	157525049	+	missense_variant	Missense_Mutation	ONP	CTTTTG	CTTTTG	TTTTTT			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	174	399	0	ENST00000346085.5:c.4939_4944delinsTTTTTT	p.Leu1647_Leu1648delinsPhePhe	p.L1647_L1648delinsFF	ENST00000346085	NM_020732.3	1647	CTTTTG/TTTTTT																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729798	41729798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	129	476	0	ENST00000242208.4:c.731G>T	p.Cys244Phe	p.C244F	ENST00000242208	NM_002192.2	244	tGt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971025	21971026	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	180	469	0	ENST00000304494.5:c.332dup	p.Arg112ProfsTer8	p.R112Pfs*8	ENST00000304494	NM_000077.4	111	ggc/ggGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971025	21971026	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	180	469	0	ENST00000304494.5:c.332dup	p.Arg112ProfsTer8	p.R112Pfs*8	ENST00000304494	NM_000077.4	111	ggc/ggGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971025	21971026	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	180	469	0	ENST00000304494.5:c.332dup	p.Arg112ProfsTer8	p.R112Pfs*8	ENST00000304494	NM_000077.4	111	ggc/ggGc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139820166	139820166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	155	786	0	ENST00000247668.2:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000247668	NM_021138.3	440	cGg/cAg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	12	292	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938646	76938646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	85	467	0	ENST00000373344.5:c.2102G>T	p.Arg701Leu	p.R701L	ENST00000373344	NM_000489.3	701	cGt/cTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	23	464	0	ENST00000371953.3:c.70G>C	p.Asp24His	p.D24H	ENST00000371953	NM_000314.4	24	Gac/Cac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	21	405	0	ENST00000371953.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000371953	NM_000314.4	130	cGa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578247	7578247	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	309	640	0	ENST00000269305.4:c.602delT	p.Leu201CysfsTer46	p.L201Cfs*46	ENST00000269305	NM_001126112.2	201	tTg/tg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916728	178916728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	308	333	0	ENST00000263967.3:c.115G>A	p.Glu39Lys	p.E39K	ENST00000263967	NM_006218.2	39	Gag/Aag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435522	110435522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	108	421	0	ENST00000375856.3:c.2879C>T	p.Ser960Leu	p.S960L	ENST00000375856	NM_003749.2	960	tCa/tTa																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790830	89790830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	256	665	0	ENST00000336032.3:c.217C>T	p.Arg73Cys	p.R73C	ENST00000336032	NM_006813.2	73	Cgc/Tgc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969459	44969459	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	211	411	0	ENST00000377967.4:c.4141G>T	p.Glu1381Ter	p.E1381*	ENST00000377967	NM_021140.2	1381	Gag/Tag																																																																														
FGF3	2248	MSKCC	GRCh37	11	69631165	69631165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	130	669	0	ENST00000334134.2:c.247G>T	p.Val83Leu	p.V83L	ENST00000334134	NM_005247.2	83	Gtg/Ttg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670333	134670333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	91	438	0	ENST00000398015.3:c.244G>A	p.Ala82Thr	p.A82T	ENST00000398015	NM_004441.4	82	Gcc/Acc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139438551	139438551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	128	656	0	ENST00000277541.6:c.65C>T	p.Pro22Leu	p.P22L	ENST00000277541	NM_017617.3	22	cCg/cTg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100523	8100523	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	160	849	0	ENST00000346208.3:c.497C>G	p.Ser166Trp	p.S166W	ENST00000346208		166	tCg/tGg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25994340	25994340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	91	296	1	ENST00000435504.4:c.473C>T	p.Ser158Leu	p.S158L	ENST00000435504		158	tCa/tTa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056703	180056703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	134	660	0	ENST00000261937.6:c.809G>A	p.Gly270Glu	p.G270E	ENST00000261937	NM_182925.4	270	gGg/gAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040779	47040779	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	338	812	1	ENST00000329236.7:c.1180A>T	p.Lys394Ter	p.K394*	ENST00000329236	NM_001204466.1	394	Aaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938146	76938146	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	296	532	0	ENST00000373344.5:c.2602T>A	p.Leu868Met	p.L868M	ENST00000373344	NM_000489.3	868	Ttg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	44	242	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	169	434	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71064794	71064794	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	43	270	0	ENST00000318789.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000318789	NM_032682.5	294	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175672	112175672	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	58	244	0	ENST00000257430.4:c.4381G>T	p.Glu1461Ter	p.E1461*	ENST00000257430	NM_000038.5	1461	Gaa/Taa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28913343	28913343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	214	424	0	ENST00000282397.4:c.2450C>A	p.Ala817Asp	p.A817D	ENST00000282397	NM_002019.4	817	gCc/gAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412002	63412002	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	104	258	0	ENST00000330258.3:c.1165G>T	p.Glu389Ter	p.E389*	ENST00000330258	NM_152424.3	389	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	141	451	0	ENST00000269305.4:c.548C>A	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112174685	112174685	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	22	200	0	ENST00000257430.4:c.3394G>T	p.Glu1132Ter	p.E1132*	ENST00000257430	NM_000038.5	1132	Gaa/Taa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468100	120468100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	78	492	0	ENST00000256646.2:c.4339G>T	p.Ala1447Ser	p.A1447S	ENST00000256646	NM_024408.3	1447	Gcc/Tcc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672122	88672122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	95	430	0	ENST00000372037.3:c.656G>T	p.Gly219Val	p.G219V	ENST00000372037	NM_004329.2	219	gGg/gTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243954	46243954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	60	289	0	ENST00000334344.6:c.2048G>T	p.Arg683Ile	p.R683I	ENST00000334344	NM_152641.2	683	aGa/aTa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223051	5223051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	85	410	0	ENST00000357368.4:c.2752G>T	p.Ala918Ser	p.A918S	ENST00000357368	NM_002850.3	918	Gcc/Tcc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11024633	11024633	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	54	470	0	ENST00000327064.4:c.750G>C	p.Gln250His	p.Q250H	ENST00000327064	NM_199141.1	250	caG/caC																																																																														
AXL	558	MSKCC	GRCh37	19	41744477	41744477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	138	613	0	ENST00000301178.4:c.1097G>T	p.Gly366Val	p.G366V	ENST00000301178	NM_021913.4	366	gGg/gTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41523716	41523716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	128	536	0	ENST00000263253.7:c.1132C>A	p.His378Asn	p.H378N	ENST00000263253	NM_001429.3	378	Cac/Aac																																																																														
TSC1	7248	MSKCC	GRCh37	9	135802624	135802624	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	103	229	0	ENST00000298552.3:c.174G>T	p.Leu58Phe	p.L58F	ENST00000298552	NM_001162426.1	58	ttG/ttT																																																																														
ATRX	546	MSKCC	GRCh37	X	76937428	76937428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	77	163	0	ENST00000373344.5:c.3320G>T	p.Cys1107Phe	p.C1107F	ENST00000373344	NM_000489.3	1107	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	30	503	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	23	354	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	336	352	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	264	570	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557201	187557201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	167	442	0	ENST00000441802.2:c.4161A>G	p.Ile1387Met	p.I1387M	ENST00000441802	NM_005245.3	1387	atA/atG																																																																														
ATM	472	MSKCC	GRCh37	11	108114816	108114817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	208	403	0	ENST00000278616.4:c.640dupT	p.Ser214PhefsTer40	p.S214Ffs*40	ENST00000278616	NM_000051.3	211	-/T																																																																														
POLE	5426	MSKCC	GRCh37	12	133245077	133245077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	334	652	2	ENST00000320574.5:c.2038C>T	p.Arg680Cys	p.R680C	ENST00000320574	NM_006231.2	680	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	23	411	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	8	267	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	92	473	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944812	31944812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	326	595	0	ENST00000340398.3:c.289G>A	p.Glu97Lys	p.E97K	ENST00000340398	NM_001013699.2	97	Gaa/Aaa																																																																														
CD79A	973	MSKCC	GRCh37	19	42384977	42384977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	276	708	2	ENST00000221972.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000221972	NM_021601.3	204	cGg/cAg																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363169	40363169	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2046	248	555	0	ENST00000397332.2:c.1060A>C	p.Ser354Arg	p.S354R	ENST00000397332	NM_001033082.2	354	Agc/Cgc																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250541	26250541	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	239	615	0	ENST00000446824.2:c.293A>G	p.Glu98Gly	p.E98G	ENST00000446824	NM_021018.2	98	gAg/gGg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675831	30675831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	302	726	0	ENST00000376406.3:c.2525G>T	p.Arg842Ile	p.R842I	ENST00000376406	NM_014641.2	842	aGa/aTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680166	30680191	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGTGGAGGCTTGGCTTCTCTCCAG	GTGGTGGAGGCTTGGCTTCTCTCCAG	-			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1226	269	692	0	ENST00000376406.3:c.1528_1553del	p.Leu510SerfsTer60	p.L510Sfs*60	ENST00000376406	NM_014641.2	510	CTGGAGAGAAGCCAAGCCTCCACCACa/a																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128321994	128321995	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATG			P-0042370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	270	711	0	ENST00000265960.3:c.763_765dup	p.His255dup	p.H255dup	ENST00000265960	NM_001006617.1	255	-/CAT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0042371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	20	473	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013674-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	578	848	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169988207	169988207	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0013674-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	170	368	0	ENST00000295797.4:c.451-2A>C		p.X151_splice	ENST00000295797	NM_002740.5	151																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0042030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	33	144	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413049	139413049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	65	697	0	ENST00000277541.6:c.1093C>T	p.Arg365Cys	p.R365C	ENST00000277541	NM_017617.3	365	Cgc/Tgc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12650364	12650364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	26	458	0	ENST00000251849.4:c.482A>G	p.Asn161Ser	p.N161S	ENST00000251849	NM_002880.3	161	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0042032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	693	864	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0042032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	352	303	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0042032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	352	303	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139397742	139397742	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	641	920	2	ENST00000277541.6:c.5059C>T	p.Gln1687Ter	p.Q1687*	ENST00000277541	NM_017617.3	1687	Cag/Tag																																																																														
TET1	80312	MSKCC	GRCh37	10	70451554	70451554	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	549	733	0	ENST00000373644.4:c.6394T>C	p.Tyr2132His	p.Y2132H	ENST00000373644	NM_030625.2	2132	Tat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0010250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	142	839	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100382	27100382	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010250-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			832	68	628	0	ENST00000324856.7:c.4094A>T	p.Gln1365Leu	p.Q1365L	ENST00000324856	NM_006015.4	1365	cAa/cTa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			945	94	698	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			926	85	686	0	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115967	8115968	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			679	71	438	0	ENST00000346208.3:c.1315dup	p.Val439GlyfsTer68	p.V439Gfs*68	ENST00000346208		438	atg/atGg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793345	139793345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	118	779	0	ENST00000247668.2:c.153C>G	p.His51Gln	p.H51Q	ENST00000247668	NM_021138.3	51	caC/caG																																																																														
ARAF	369	MSKCC	GRCh37	X	47429340	47429340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012278-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	116	858	0	ENST00000377045.4:c.1468T>G	p.Ser490Ala	p.S490A	ENST00000377045	NM_001654.4	490	Tca/Gca																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034921-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			966	114	734	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307243	118307243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034921-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	30	230	0	ENST00000534358.1:c.16C>T	p.Arg6Trp	p.R6W	ENST00000534358	NM_005933.3	6	Cgg/Tgg																																																																														
CALR	811	MSKCC	GRCh37	19	13051240	13051240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034921-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	56	513	0	ENST00000316448.5:c.676G>C	p.Asp226His	p.D226H	ENST00000316448	NM_004343.3	226	Gat/Cat																																																																														
CBL	867	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	180	289	0	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																															
ATM	472	MSKCC	GRCh37	11	108172434	108172434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	251	473	1	ENST00000278616.4:c.5237G>T	p.Gly1746Val	p.G1746V	ENST00000278616	NM_000051.3	1746	gGa/gTa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17127420	17127420	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			821	203	720	0	ENST00000285071.4:c.434A>T	p.Asp145Val	p.D145V	ENST00000285071	NM_144997.5	145	gAt/gTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29562738	29562739	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	108	306	0	ENST00000358273.4:c.3822_3823del	p.Phe1275ProfsTer8	p.F1275Pfs*8	ENST00000358273	NM_001042492.2	1273	aCT/a																																																																														
MGA	23269	MSKCC	GRCh37	15	41991260	41991260	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0041695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	384	317	1	ENST00000219905.7:c.2093-2A>C		p.X698_splice	ENST00000219905	NM_001164273.1	698																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81973509	81973510	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGCC			P-0041695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	172	363	0	ENST00000359376.3:c.3328_3332dup	p.Ile1112AlafsTer11	p.I1112Afs*11	ENST00000359376	NM_002661.3	1109	ctc/ctCAGCCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	51	194	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	212	458	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0042217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	85	265	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651558	206651558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	70	399	0	ENST00000367120.3:c.868G>A	p.Ala290Thr	p.A290T	ENST00000367120	NM_014002.3	290	Gcc/Acc																																																																														
RAD51	5888	MSKCC	GRCh37	15	41021011	41021011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	158	351	0	ENST00000267868.3:c.633G>A	p.Met211Ile	p.M211I	ENST00000267868	NM_002875.4	211	atG/atA																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117799	70117800	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	275	341	0	ENST00000245479.2:c.270dup	p.Met91HisfsTer161	p.M91Hfs*161	ENST00000245479	NM_000346.3	89	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	40	911	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979442	2979442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	17	841	0	ENST00000396946.4:c.805C>G	p.Leu269Val	p.L269V	ENST00000396946	NM_032415.4	269	Ctg/Gtg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206665035	206665035	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			204	17	745	0	ENST00000367120.3:c.1788C>A	p.Cys596Ter	p.C596*	ENST00000367120	NM_014002.3	596	tgC/tgA																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251878	8251878	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	44	888	0	ENST00000335790.3:c.199A>T	p.Thr67Ser	p.T67S	ENST00000335790	NM_002315.2	67	Acc/Tcc																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205562	61205562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			86	15	664	1	ENST00000301761.2:c.347G>T	p.Trp116Leu	p.W116L	ENST00000301761	NM_017841.2	116	tGg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136184	11136184	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	27	838	1	ENST00000344626.4:c.3168G>T	p.Glu1056Asp	p.E1056D	ENST00000344626	NM_003072.3	1056	gaG/gaT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138577	11138577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			121	15	929	0	ENST00000344626.4:c.3333C>G	p.Ile1111Met	p.I1111M	ENST00000344626	NM_003072.3	1111	atC/atG																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661909	227661909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	21	1011	1	ENST00000305123.5:c.1546G>T	p.Asp516Tyr	p.D516Y	ENST00000305123	NM_005544.2	516	Gat/Tat																																																																														
TOP1	7150	MSKCC	GRCh37	20	39690115	39690115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			94	17	336	0	ENST00000361337.2:c.140C>T	p.Ser47Phe	p.S47F	ENST00000361337	NM_003286.2	47	tCc/tTc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202232	138202232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	29	768	0	ENST00000237289.4:c.2149G>T	p.Ala717Ser	p.A717S	ENST00000237289	NM_001270507.1	717	Gcc/Tcc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636929	176636929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			81	12	781	0	ENST00000439151.2:c.1529G>T	p.Ser510Ile	p.S510I	ENST00000439151	NM_022455.4	510	aGt/aTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534815	18534815	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			113	12	613	0	ENST00000266497.5:c.1872+1G>T		p.X624_splice	ENST00000266497		624																																																																															
NF1	4763	MSKCC	GRCh37	17	29562750	29562750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			68	11	549	0	ENST00000358273.4:c.3830G>T	p.Gly1277Val	p.G1277V	ENST00000358273	NM_001042492.2	1277	gGc/gTc																																																																														
INHA	3623	MSKCC	GRCh37	2	220439987	220439987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			212	20	1122	0	ENST00000243786.2:c.840C>G	p.Ile280Met	p.I280M	ENST00000243786	NM_002191.3	280	atC/atG																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31395666	31395666	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038098-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	18	749	0	ENST00000328111.2:c.2519G>T	p.Arg840Leu	p.R840L	ENST00000328111	NM_006892.3	840	cGa/cTa																																																																														
RB1	5925	MSKCC	GRCh37	13	48919236	48919236	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0042097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	84	29	0	ENST00000267163.4:c.401T>G	p.Leu134Ter	p.L134*	ENST00000267163	NM_000321.2	134	tTa/tGa																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056331	26056333	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs762045774		P-0042097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	177	308	0	ENST00000343677.2:c.324_326del	p.Asn108del	p.N108del	ENST00000343677	NM_005319.3	108	aaCAAg/aag																																																																														
RHEB	6009	MSKCC	GRCh37	7	151174480	151174480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	96	167	0	ENST00000262187.5:c.214C>G	p.Gln72Glu	p.Q72E	ENST00000262187	NM_005614.3	72	Cag/Gag																																																																														
AGO2	27161	MSKCC	GRCh37	8	141568632	141568632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	616	1043	0	ENST00000220592.5:c.830G>A	p.Arg277Lys	p.R277K	ENST00000220592	NM_012154.3	277	aGg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	183	196	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	47	119	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174406	112174406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	34	82	0	ENST00000257430.4:c.3115G>T	p.Gly1039Ter	p.G1039*	ENST00000257430	NM_000038.5	1039	Gga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	110	254	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609331	81609331	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139286618		P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	55	71	0	ENST00000298171.2:c.929G>A	p.Arg310His	p.R310H	ENST00000298171	NM_000369.2	310	cGc/cAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65300245	65300245	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	25	70	0	ENST00000342505.4:c.3465A>C	p.Ter1155TyrextTer3	p.*1155Yext*3	ENST00000342505	NM_002227.2	1155	taA/taC																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119720895	119720895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	29	86	0	ENST00000316626.5:c.280A>G	p.Lys94Glu	p.K94E	ENST00000316626		94	Aag/Gag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875028	151875028	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0042098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	26	76	0	ENST00000262189.6:c.7510C>T	p.Gln2504Ter	p.Q2504*	ENST00000262189	NM_170606.2	2504	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0042101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	83	420	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	101	521	1	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	105	538	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426177	49426177	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	162	580	0	ENST00000301067.7:c.12311A>C	p.Gln4104Pro	p.Q4104P	ENST00000301067	NM_003482.3	4104	cAa/cCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951962	178951962	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	142	353	0	ENST00000263967.3:c.3017T>G	p.Leu1006Arg	p.L1006R	ENST00000263967	NM_006218.2	1006	cTt/cGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416582	49416582	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	80	413	0	ENST00000301067.7:c.16129A>G	p.Ser5377Gly	p.S5377G	ENST00000301067	NM_003482.3	5377	Agc/Ggc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591891	48591891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936394		P-0042102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	117	323	0	ENST00000342988.3:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000342988	NM_005359.5	352	Gga/Aga																																																																														
AXL	558	MSKCC	GRCh37	19	41743939	41743939	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	78	709	0	ENST00000301178.4:c.874C>A	p.His292Asn	p.H292N	ENST00000301178	NM_021913.4	292	Cat/Aat																																																																														
AR	367	MSKCC	GRCh37	X	66937345	66937345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	45	416	0	ENST00000374690.3:c.2199C>A	p.Asp733Glu	p.D733E	ENST00000374690	NM_000044.3	733	gaC/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0042105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	102	935	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368202	45368202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	39	323	0	ENST00000262160.6:c.1400C>T	p.Ser467Leu	p.S467L	ENST00000262160	NM_005901.5	467	tCa/tTa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400934	72400934	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	31	356	0	ENST00000357731.5:c.237T>G	p.Phe79Leu	p.F79L	ENST00000357731	NM_173808.2	79	ttT/ttG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			164	177	388	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	127	275	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	121	552	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	146	621	0	ENST00000373198.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000373198	NM_133170.3	546	cGg/cAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	18	311	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467993	50467993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	160	654	0	ENST00000331340.3:c.1228G>A	p.Gly410Ser	p.G410S	ENST00000331340	NM_006060.4	410	Ggt/Agt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211939	36211939	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1369	142	1022	0	ENST00000222270.7:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000222270	NM_014727.1	564	Cga/Tga																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72842119	72842119	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042158-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	159	293	0	ENST00000325599.8:c.1129A>C	p.Ile377Leu	p.I377L	ENST00000325599	NM_018130.2	377	Ata/Cta																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0042173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	21	847	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	32	901	1	ENST00000269305.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000269305	NM_001126112.2	337	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	107	468	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0006660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	41	466	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14038623	14038623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	124	481	0	ENST00000311895.7:c.1948G>C	p.Asp650His	p.D650H	ENST00000311895	NM_005236.2	650	Gat/Cat																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020808	26020808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	47	382	0	ENST00000357647.3:c.91C>G	p.Pro31Ala	p.P31A	ENST00000357647	NM_003529.2	31	Ccg/Gcg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246670422	246670422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	83	756	0	ENST00000388985.4:c.98C>G	p.Ser33Trp	p.S33W	ENST00000388985		33	tCg/tGg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65305439	65305439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			651	69	583	0	ENST00000342505.4:c.2689G>A	p.Glu897Lys	p.E897K	ENST00000342505	NM_002227.2	897	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108216597	108216597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	27	305	1	ENST00000278616.4:c.8546G>A	p.Arg2849Gln	p.R2849Q	ENST00000278616	NM_000051.3	2849	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151856106	151856106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006660-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			643	78	517	0	ENST00000262189.6:c.11512C>G	p.Pro3838Ala	p.P3838A	ENST00000262189	NM_170606.2	3838	Cca/Gca																																																																														
FGF3	2248	MSKCC	GRCh37	11	69631129	69631129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014385-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			893	284	756	0	ENST00000334134.2:c.283C>T	p.Arg95Trp	p.R95W	ENST00000334134	NM_005247.2	95	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	29443631	29443631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014385-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			697	415	850	0	ENST00000389048.3:c.3586C>A	p.Leu1196Met	p.L1196M	ENST00000389048	NM_004304.4	1196	Ctg/Atg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149457737	149457737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014385-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	164	816	0	ENST00000286301.3:c.667G>A	p.Val223Met	p.V223M	ENST00000286301	NM_005211.3	223	Gtg/Atg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	134	484	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629919	187629919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	150	670	0	ENST00000441802.2:c.1063G>A	p.Val355Met	p.V355M	ENST00000441802	NM_005245.3	355	Gtg/Atg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349025	89349025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	158	801	0	ENST00000301030.4:c.3925A>G	p.Thr1309Ala	p.T1309A	ENST00000301030	NM_001256183.1	1309	Acg/Gcg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0042047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	160	763	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TSC2	7249	MSKCC	GRCh37	16	2108758	2108758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146854256		P-0042047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	47	660	0	ENST00000219476.3:c.859G>A	p.Glu287Lys	p.E287K	ENST00000219476	NM_000548.3	287	Gag/Aag																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645634	12645634	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0042047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	28	228	0	ENST00000251849.4:c.834+1G>T		p.X278_splice	ENST00000251849	NM_002880.3	278																																																																															
FAT1	2195	MSKCC	GRCh37	4	187517856	187517856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	42	450	0	ENST00000441802.2:c.12838G>A	p.Glu4280Lys	p.E4280K	ENST00000441802	NM_005245.3	4280	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0017326-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			748	44	606	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032594	47032594	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0017326-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			871	101	868	0	ENST00000329236.7:c.269del	p.Ser90Ter	p.S90*	ENST00000329236	NM_001204466.1	90	tCa/ta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	107	729	5	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720857	89720857	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0042015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	16	412	0	ENST00000371953.3:c.1008C>G	p.Tyr336Ter	p.Y336*	ENST00000371953	NM_000314.4	336	taC/taG																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612677	228612677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1278	85	939	1	ENST00000366696.1:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000366696	NM_003493.2	117	cGg/cAg																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564667	139564667	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1465	129	1100	0	ENST00000308874.7:c.456C>A	p.Cys152Ter	p.C152*	ENST00000308874		152	tgC/tgA																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900209	101900209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	56	180	0	ENST00000374994.4:c.643C>T	p.Arg215Ter	p.R215*	ENST00000374994	NM_004612.2	215	Cga/Tga																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891277	101891277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	76	287	0	ENST00000374994.4:c.238C>T	p.Arg80Ter	p.R80*	ENST00000374994	NM_004612.2	80	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68846037	68846037	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0042016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	98	463	0	ENST00000261769.5:c.1009-1G>A		p.X337_splice	ENST00000261769	NM_004360.3	337																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27056230	27056230	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	160	577	0	ENST00000324856.7:c.1226C>A	p.Ser409Ter	p.S409*	ENST00000324856	NM_006015.4	409	tCa/tAa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5207937	5207937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	76	811	0	ENST00000357368.4:c.5774C>A	p.Thr1925Lys	p.T1925K	ENST00000357368	NM_002850.3	1925	aCa/aAa																																																																														
APC	324	MSKCC	GRCh37	5	112175549	112175549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	43	213	0	ENST00000257430.4:c.4258C>T	p.Pro1420Ser	p.P1420S	ENST00000257430	NM_000038.5	1420	Ccc/Tcc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0042024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	153	452	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	511	1099	2	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0042024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	330	792	0	ENST00000269305.4:c.583dupA	p.Ile195AsnfsTer14	p.I195Nfs*14	ENST00000269305	NM_001126112.2	195	atc/aAtc																																																																														
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0042024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	135	268	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385239	41385239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	374	760	0	ENST00000373198.4:c.722G>A	p.Arg241His	p.R241H	ENST00000373198	NM_133170.3	241	cGt/cAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101064	41101064	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0042024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	98	732	0	ENST00000373198.4:c.1292A>C	p.Asn431Thr	p.N431T	ENST00000373198	NM_133170.3	431	aAc/aCc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070335	37070335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0042024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	74	429	0	ENST00000231790.2:c.1470G>T	p.Met490Ile	p.M490I	ENST00000231790	NM_000249.3	490	atG/atT																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	192	672	1	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
TEK	7010	MSKCC	GRCh37	9	27220064	27220064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0042025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	140	534	0	ENST00000380036.4:c.3121G>A	p.Gly1041Arg	p.G1041R	ENST00000380036	NM_000459.3	1041	Ggg/Agg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0042026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	171	346	0				ENST00000310581	NM_198253.2																																																																																
VHL	7428	MSKCC	GRCh37	3	10191481	10191482	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAGAGCGATGCCTCCA			P-0042026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	117	422	0	ENST00000256474.2:c.475_491dup	p.Val165LysfsTer11	p.V165Kfs*11	ENST00000256474	NM_000551.3	158	-/AAAGAGCGATGCCTCCA																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793554	89793554	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0042026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	98	301	0	ENST00000336032.3:c.623A>T	p.Gln208Leu	p.Q208L	ENST00000336032	NM_006813.2	208	cAa/cTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371725	89371728	+	stop_gained	Nonsense_Mutation	ONP	TCTT	TCTT	ACTA			P-0042026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	63	621	0	ENST00000301030.4:c.112_115delinsTAGT	p.Lys38_Thr39delinsTer	p.K38_T39delins*	ENST00000301030	NM_001256183.1	38	AAGAcc/TAGTcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000027-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	16	131	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000056-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	161	123	0				ENST00000310581	NM_198253.2																																																																																
BAP1	8314	MSKCC	GRCh37	3	52442579	52442579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000056-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			617	328	210	0	ENST00000460680.1:c.166C>T	p.Arg56Cys	p.R56C	ENST00000460680	NM_004656.3	56	Cgc/Tgc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517519	176517519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000056-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			871	91	281	0	ENST00000292408.4:c.220G>T	p.Ala74Ser	p.A74S	ENST00000292408	NM_213647.1	74	Gca/Tca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170183	32170183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000056-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	314	245	0	ENST00000375023.3:c.3425A>G	p.Tyr1142Cys	p.Y1142C	ENST00000375023	NM_004557.3	1142	tAc/tGc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652074	36652074	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000056-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1248	88	348	0	ENST00000244741.5:c.196G>T	p.Glu66Ter	p.E66*	ENST00000244741	NM_000389.4	66	Gag/Tag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806092	1806092	+	protein_altering_variant	In_Frame_Ins	INS	A	A	CACT			P-0000056-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			816	370	339	0	ENST00000260795.2:c.1111delinsCACT	p.Ser371delinsHisCys	p.S371delinsHC	ENST00000260795		371	Agt/CACTgt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670264	134670264	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	220	267	0	ENST00000398015.3:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000398015	NM_004441.4	59	Cag/Tag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806225	1806225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	194	327	0	ENST00000260795.2:c.1244C>T	p.Ser415Phe	p.S415F	ENST00000260795		415	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518888	187518888	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	375	444	0	ENST00000441802.2:c.12316G>C	p.Asp4106His	p.D4106H	ENST00000441802	NM_005245.3	4106	Gac/Cac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518921	187518921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	317	392	0	ENST00000441802.2:c.12283G>C	p.Asp4095His	p.D4095H	ENST00000441802	NM_005245.3	4095	Gat/Cat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			18	79	174	0				ENST00000310581	NM_198253.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151949063	151949063	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			654	255	279	2	ENST00000262189.6:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000262189	NM_170606.2	528	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949168	151949168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	192	230	0	ENST00000262189.6:c.1477C>T	p.His493Tyr	p.H493Y	ENST00000262189	NM_170606.2	493	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			96	265	172	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			96	265	172	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			96	265	172	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435083	110435083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	246	195	0	ENST00000375856.3:c.3318G>C	p.Lys1106Asn	p.K1106N	ENST00000375856	NM_003749.2	1106	aaG/aaC																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250890	99250890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	353	329	0	ENST00000268035.6:c.194C>G	p.Ser65Cys	p.S65C	ENST00000268035	NM_000875.3	65	tCc/tGc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89825040	89825040	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	221	316	0	ENST00000389301.3:c.2926G>C	p.Asp976His	p.D976H	ENST00000389301	NM_000135.2	976	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	248	201	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35860998	35861006	+	inframe_deletion	In_Frame_Del	DEL	TATAGCCAG	TATAGCCAG	-			P-0000063-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2481	322	216	0	ENST00000303115.3:c.128_136delATAGCCAGT	p.Tyr43_Gln45del	p.Y43_Q45del	ENST00000303115	NM_002185.3	43	TATAGCCAG/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000065-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1164	188	409	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000065-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	18	148	0				ENST00000310581	NM_198253.2																																																																																
MAP2K1	5604	MSKCC	GRCh37	15	66729153	66729153	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000065-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			529	90	359	0	ENST00000307102.5:c.361T>A	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	121	Tgc/Agc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16046949	16046949	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000065-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1050	147	423	0	ENST00000268712.3:c.1144G>T	p.Glu382Ter	p.E382*	ENST00000268712	NM_006311.3	382	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	53	117	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112178909	112178909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	31	264	0	ENST00000257430.4:c.7618C>T	p.Pro2540Ser	p.P2540S	ENST00000257430	NM_000038.5	2540	Cca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1175	82	360	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883173	37883173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1687	101	427	0	ENST00000269571.5:c.3076C>T	p.Pro1026Ser	p.P1026S	ENST00000269571		1026	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	51	115	0				ENST00000310581	NM_198253.2																																																																																
MTOR	2475	MSKCC	GRCh37	1	11303178	11303178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	69	215	0	ENST00000361445.4:c.1405G>C	p.Ala469Pro	p.A469P	ENST00000361445	NM_004958.3	469	Gcc/Ccc																																																																														
FIP1L1	81608	MSKCC	GRCh37	4	54292041	54292041	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	29	167	0	ENST00000337488.6:c.926G>A	p.Arg309Lys	p.R309K	ENST00000337488	NM_030917.3	309	aGa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1293613	1293613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	136	187	0	ENST00000310581.5:c.1388G>A	p.Gly463Asp	p.G463D	ENST00000310581	NM_198253.2	463	gGc/gAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133252789	133252789	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	100	229	0	ENST00000320574.5:c.911G>A	p.Gly304Asp	p.G304D	ENST00000320574	NM_006231.2	304	gGc/gAc																																																																														
RB1	5925	MSKCC	GRCh37	13	49047507	49047507	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			809	125	404	0	ENST00000267163.4:c.2501C>G	p.Ser834Ter	p.S834*	ENST00000267163	NM_000321.2	834	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577113	7577113	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			827	191	396	0	ENST00000269305.4:c.825T>A	p.Cys275Ter	p.C275*	ENST00000269305	NM_001126112.2	275	tgT/tgA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15960969	15960969	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	118	244	0	ENST00000268712.3:c.6251C>G	p.Ser2084Ter	p.S2084*	ENST00000268712	NM_006311.3	2084	tCa/tGa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40828029	40828029	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	44	136	0	ENST00000373198.4:c.2400-1G>T		p.X800_splice	ENST00000373198	NM_133170.3	800																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44950066	44950066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	145	281	0	ENST00000377967.4:c.3835C>T	p.Arg1279Ter	p.R1279*	ENST00000377967	NM_021140.2	1279	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	69	112	0				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49431787	49431787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	225	229	0	ENST00000301067.7:c.9352G>C	p.Val3118Leu	p.V3118L	ENST00000301067	NM_003482.3	3118	Gtg/Ctg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			674	415	377	1	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
RB1	5925	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	87	220	0	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735466	40735466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182388300		P-0000084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1979	363	327	1	ENST00000373198.4:c.3407G>A	p.Arg1136His	p.R1136H	ENST00000373198	NM_133170.3	1136	cGt/cAt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652061	36652061	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			776	377	309	0	ENST00000244741.5:c.183delT	p.Asp62ThrfsTer86	p.D62Tfs*86	ENST00000244741	NM_000389.4	61	ggT/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579315	7579316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	236	191	0	ENST00000269305.4:c.371dupG	p.Cys124TrpfsTer25	p.C124Wfs*25	ENST00000269305	NM_001126112.2	124	tgc/tgGc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652129	36652137	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCCGGG	GAGGCCGGG	A			P-0000084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			627	204	300	0	ENST00000244741.5:c.251_259delinsA	p.Arg84GlnfsTer2	p.R84Qfs*2	ENST00000244741	NM_000389.4	84	cGAGGCCGGGat/cAat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000085-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			240	15	176	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000085-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			427	22	134	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481806	56481806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000085-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			732	57	330	0	ENST00000267101.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000267101	NM_001982.3	245	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106785	27106785	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000085-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			702	40	282	0	ENST00000324856.7:c.6397delG	p.Asp2133ThrfsTer2	p.D2133Tfs*2	ENST00000324856	NM_006015.4	2132	gtG/gt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	55	238	0				ENST00000310581	NM_198253.2																																																																																
MDC1	9656	MSKCC	GRCh37	6	30672534	30672534	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1046	91	486	0	ENST00000376406.3:c.4426G>T	p.Gly1476Ter	p.G1476*	ENST00000376406	NM_014641.2	1476	Gga/Tga																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741372	145741372	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0000088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1069	213	516	0	ENST00000428558.2:c.1131G>C	p.Gln377His	p.Q377H	ENST00000428558	NM_004260.3	377	caG/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587780066		P-0000088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			670	161	360	0	ENST00000269305.4:c.328del	p.Arg110ValfsTer13	p.R110Vfs*13	ENST00000269305	NM_001126112.2	110	Cgt/gt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254962	16254962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	36	255	0	ENST00000375759.3:c.2227C>G	p.Gln743Glu	p.Q743E	ENST00000375759	NM_015001.2	743	Cag/Gag																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80537193	80537193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	32	217	0	ENST00000286548.4:c.205G>C	p.Asp69His	p.D69H	ENST00000286548	NM_002072.3	69	Gat/Cat																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317111	87317111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	54	406	0	ENST00000277120.3:c.250G>A	p.Glu84Lys	p.E84K	ENST00000277120		84	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427354	49427354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	63	362	0	ENST00000301067.7:c.11134G>C	p.Asp3712His	p.D3712H	ENST00000301067	NM_003482.3	3712	Gat/Cat																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434839	99434839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	27	244	0	ENST00000268035.6:c.926C>T	p.Ser309Leu	p.S309L	ENST00000268035	NM_000875.3	309	tCg/tTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220428	123220428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	147	300	0	ENST00000218089.9:c.3085C>T	p.Gln1029Ter	p.Q1029*	ENST00000218089	NM_001042749.1	1029	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			788	57	439	0	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3801734	3801735	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0000088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	80	446	1	ENST00000262367.5:c.3771_3772delGCinsTT	p.GlnPro1257HisSer	p.QP1257HS	ENST00000262367	NM_004380.2	1257	caGCcc/caTTcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000096-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	136	105	0				ENST00000310581	NM_198253.2																																																																																
RHOA	387	MSKCC	GRCh37	3	49412884	49412884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000096-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	481	399	0	ENST00000418115.1:c.139G>A	p.Glu47Lys	p.E47K	ENST00000418115	NM_001664.2	47	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0000096-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	785	157	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234541	41234541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000096-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			771	290	346	0	ENST00000357654.3:c.4237G>A	p.Glu1413Lys	p.E1413K	ENST00000357654	NM_007294.3	1413	Gaa/Aaa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5246019	5246019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000096-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	103	227	0	ENST00000357368.4:c.756G>C	p.Met252Ile	p.M252I	ENST00000357368	NM_002850.3	252	atG/atC																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942137	17942137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000096-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	313	331	0	ENST00000458235.1:c.2878G>A	p.Glu960Lys	p.E960K	ENST00000458235	NM_000215.3	960	Gag/Aag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041582	47041582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000096-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	486	222	0	ENST00000329236.7:c.1573C>A	p.Gln525Lys	p.Q525K	ENST00000329236	NM_001204466.1	525	Cag/Aag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135782749	135782750	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0000096-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	379	324	0	ENST00000298552.3:c.1271_1272delGA	p.Arg424AsnfsTer17	p.R424Nfs*17	ENST00000298552	NM_001162426.1	424	aGA/a																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929463	44929466	+	frameshift_variant	Frame_Shift_Del	DEL	AATG	AATG	-			P-0000096-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	427	217	3	ENST00000377967.4:c.2563_2566delAATG	p.Asn855GlufsTer11	p.N855Efs*11	ENST00000377967	NM_021140.2	855	AATGga/ga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000149-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			50	56	222	0				ENST00000310581	NM_198253.2																																																																																
ATR	545	MSKCC	GRCh37	3	142217613	142217613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000149-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			158	70	227	1	ENST00000350721.4:c.5384delG	p.Gly1795GlufsTer29	p.G1795Efs*29	ENST00000350721	NM_001184.3	1795	gGa/ga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0000149-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			139	64	527	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181429	38181429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000149-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			159	11	266	0	ENST00000396334.3:c.442G>A	p.Asp148Asn	p.D148N	ENST00000396334	NM_002468.4	148	Gac/Aac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247070	53247070	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000149-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			201	15	725	0	ENST00000375401.3:c.430C>G	p.Pro144Ala	p.P144A	ENST00000375401	NM_004187.3	144	Cca/Gca																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9770648	9770648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			861	76	457	0	ENST00000377346.4:c.135C>G	p.Ile45Met	p.I45M	ENST00000377346	NM_005026.3	45	atC/atG																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78432773	78432773	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1502	147	351	1	ENST00000370768.2:c.303G>C	p.Met101Ile	p.M101I	ENST00000370768	NM_003902.3	101	atG/atC																																																																														
TET2	54790	MSKCC	GRCh37	4	106155746	106155746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1021	101	308	0	ENST00000380013.4:c.647C>G	p.Ser216Cys	p.S216C	ENST00000380013	NM_001127208.2	216	tCt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295243	1295243	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs35550267		P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	37	173	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	42	185	0				ENST00000310581	NM_198253.2																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149505028	149505028	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	40	310	0	ENST00000261799.4:c.1787C>G	p.Pro596Arg	p.P596R	ENST00000261799	NM_002609.3	596	cCg/cGg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099136	157099136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	21	97	1	ENST00000346085.5:c.73C>G	p.Leu25Val	p.L25V	ENST00000346085	NM_020732.3	25	Ctc/Gtc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874550	151874550	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1215	66	298	4	ENST00000262189.6:c.7988C>G	p.Ser2663Ter	p.S2663*	ENST00000262189	NM_170606.2	2663	tCa/tGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151919140	151919140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			814	242	213	10	ENST00000262189.6:c.3445G>A	p.Asp1149Asn	p.D1149N	ENST00000262189	NM_170606.2	1149	Gac/Aac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390892	139390892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	40	266	0	ENST00000277541.6:c.7299C>A	p.Phe2433Leu	p.F2433L	ENST00000277541	NM_017617.3	2433	ttC/ttA																																																																														
CCND2	894	MSKCC	GRCh37	12	4398124	4398124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			795	103	295	0	ENST00000261254.3:c.688G>C	p.Glu230Gln	p.E230Q	ENST00000261254	NM_001759.3	230	Gag/Cag																																																																														
EP300	2033	MSKCC	GRCh37	22	41564521	41564521	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1281	173	440	6	ENST00000263253.7:c.3943C>G	p.His1315Asp	p.H1315D	ENST00000263253	NM_001429.3	1315	Cac/Gac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041720	47041720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	81	180	1	ENST00000329236.7:c.1711C>T	p.Gln571Ter	p.Q571*	ENST00000329236	NM_001204466.1	571	Caa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55984909	55984910	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1215	67	405	0	ENST00000263923.4:c.219_220delGG	p.Arg73SerfsTer5	p.R73Sfs*5	ENST00000263923	NM_002253.2	73	agGGtg/agtg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295209	1295228	+	upstream_gene_variant	5'Flank	DEL	GGGGCTGGGAGGGCCCGGAG	GGGGCTGGGAGGGCCCGGAG	-			P-0000222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	17	118	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			75	70	121	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	107	483	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			59	175	54	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			59	175	54	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	204	382	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261434	16261434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	63	190	0	ENST00000375759.3:c.8699C>T	p.Ser2900Leu	p.S2900L	ENST00000375759	NM_015001.2	2900	tCg/tTg																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695827	117695827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	200	246	0	ENST00000369458.3:c.610G>A	p.Glu204Lys	p.E204K	ENST00000369458	NM_024626.3	204	Gag/Aag																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699504	117699504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	121	143	0	ENST00000369458.3:c.137G>A	p.Gly46Glu	p.G46E	ENST00000369458	NM_024626.3	46	gGg/gAg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25497905	25497905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	85	274	0	ENST00000264709.3:c.544C>T	p.Gln182Ter	p.Q182*	ENST00000264709	NM_175629.2	182	Cag/Tag																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044357	128044357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	200	356	0	ENST00000285398.2:c.1264G>A	p.Glu422Lys	p.E422K	ENST00000285398	NM_000122.1	422	Gag/Aag																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138453532	138453532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			672	117	325	0	ENST00000289153.2:c.916C>T	p.Arg306Ter	p.R306*	ENST00000289153	NM_006219.2	306	Cga/Tga																																																																														
KIT	3815	MSKCC	GRCh37	4	55597518	55597518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	62	288	0	ENST00000288135.5:c.2166G>A	p.Met722Ile	p.M722I	ENST00000288135	NM_000222.2	722	atG/atA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509751	187509751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	28	76	0	ENST00000441802.2:c.13762G>T	p.Val4588Phe	p.V4588F	ENST00000441802	NM_005245.3	4588	Gtc/Ttc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584555	187584555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			493	80	295	0	ENST00000441802.2:c.3478C>T	p.Gln1160Ter	p.Q1160*	ENST00000441802	NM_005245.3	1160	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112103041	112103041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	198	227	0	ENST00000257430.4:c.376G>A	p.Gly126Arg	p.G126R	ENST00000257430	NM_000038.5	126	Gga/Aga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704529	117704529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			748	168	332	0	ENST00000368508.3:c.2447G>A	p.Gly816Glu	p.G816E	ENST00000368508	NM_002944.2	816	gGg/gAg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163755	152163755	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			537	84	259	0	ENST00000206249.3:c.476A>T	p.Gln159Leu	p.Q159L	ENST00000206249	NM_000125.3	159	cAg/cTg																																																																														
PARK2	5071	MSKCC	GRCh37	6	162206831	162206831	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	64	179	0	ENST00000366898.1:c.844C>T	p.Gln282Ter	p.Q282*	ENST00000366898	NM_004562.2	282	Caa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341845	8341845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	499	387	0	ENST00000356435.5:c.4795G>A	p.Glu1599Lys	p.E1599K	ENST00000356435		1599	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507315	8507315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			842	95	327	0	ENST00000356435.5:c.1663G>A	p.Glu555Lys	p.E555K	ENST00000356435		555	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412690	139412690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	140	250	0	ENST00000277541.6:c.1154C>T	p.Ser385Phe	p.S385F	ENST00000277541	NM_017617.3	385	tCc/tTc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138944	64138944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	79	243	0	ENST00000334205.4:c.2311C>T	p.Pro771Ser	p.P771S	ENST00000334205	NM_003942.2	771	Ccc/Tcc																																																																														
ATM	472	MSKCC	GRCh37	11	108137973	108137973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			461	188	251	0	ENST00000278616.4:c.2542G>A	p.Glu848Lys	p.E848K	ENST00000278616	NM_000051.3	848	Gag/Aag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115110029	115110029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	61	139	0	ENST00000257566.3:c.1849G>A	p.Ala617Thr	p.A617T	ENST00000257566	NM_016569.3	617	Gcg/Acg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912145	32912145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	88	266	0	ENST00000380152.3:c.3653G>A	p.Gly1218Asp	p.G1218D	ENST00000380152		1218	gGc/gAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37673806	37673806	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201661022		P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	73	184	0	ENST00000447079.4:c.2960C>T	p.Ser987Phe	p.S987F	ENST00000447079	NM_015083.1	987	tCt/tTt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867298	45867298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			90	148	115	0	ENST00000391945.4:c.895C>T	p.Arg299Trp	p.R299W	ENST00000391945	NM_000400.3	299	Cgg/Tgg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561547	9561547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	59	155	0	ENST00000353224.5:c.235G>A	p.Glu79Lys	p.E79K	ENST00000353224	NM_177990.2	79	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40979281	40979281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	48	148	0	ENST00000373198.4:c.1852G>A	p.Gly618Arg	p.G618R	ENST00000373198	NM_133170.3	618	Gga/Aga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938533	44938533	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	122	161	0	ENST00000377967.4:c.3081A>C	p.Arg1027Ser	p.R1027S	ENST00000377967	NM_021140.2	1027	agA/agC																																																																														
TET1	80312	MSKCC	GRCh37	10	70332249	70332249	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			822	94	506	0	ENST00000373644.4:c.155delT	p.Leu52Ter	p.L52*	ENST00000373644	NM_030625.2	52	Tta/ta																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627748	37627777	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAATACCAGCTCTTCCACAGCAACCA	CCTCCAATACCAGCTCTTCCACAGCAACCA	-			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			784	50	503	0	ENST00000447079.4:c.1667_1696delCAATACCAGCTCTTCCACAGCAACCACCTC	p.Pro556_Pro565del	p.P556_P565del	ENST00000447079	NM_015083.1	555	CCTCCAATACCAGCTCTTCCACAGCAACCA/-																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462370	89462371	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	AGA			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	87	242	0	ENST00000336596.2:c.1842_1843delGGinsAGA	p.Leu616IlefsTer9	p.L616Ifs*9	ENST00000336596	NM_005233.5	614	aaGGaa/aaAGAaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163021	47163023	+	frameshift_variant	Frame_Shift_Del	DEL	ATG	ATG	TA			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	255	341	0	ENST00000409792.3:c.3103_3105delCATinsTA	p.His1035Ter	p.H1035*	ENST00000409792	NM_014159.6	1035	CAT/TA																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023625	31023626	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0000237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	78	339	0	ENST00000375687.4:c.3110_3111delGGinsAA	p.Trp1037Ter	p.W1037*	ENST00000375687	NM_015338.5	1037	tGG/tAA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000240-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	124	203	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000240-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	258	140	0				ENST00000310581	NM_198253.2																																																																																
RASA1	5921	MSKCC	GRCh37	5	86672329	86672329	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	117	194	0	ENST00000274376.6:c.2131C>T	p.Arg711Ter	p.R711*	ENST00000274376	NM_002890.2	711	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	99	118	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	99	118	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	99	118	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	180	298	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487589	56487589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			900	112	322	0	ENST00000267101.3:c.1522G>C	p.Gly508Arg	p.G508R	ENST00000267101	NM_001982.3	508	Gga/Cga																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986893	36986893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	20	134	0	ENST00000354822.5:c.796G>A	p.Gly266Ser	p.G266S	ENST00000354822	NM_001079668.2	266	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	76	260	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123693	11123693	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	118	312	0	ENST00000344626.4:c.2343G>C	p.Met781Ile	p.M781I	ENST00000344626	NM_003072.3	781	atG/atC																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460376	149460376	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	129	330	0	ENST00000286301.3:c.261delT	p.Gly88GlufsTer24	p.G88Efs*24	ENST00000286301	NM_005211.3	87	ccT/cc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914459	32914460	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0000245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	262	241	0	ENST00000380152.3:c.5968_5969delGA	p.Asp1990CysfsTer12	p.D1990Cfs*12	ENST00000380152		1989	tcAGat/tcat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0000268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	45	225	0				ENST00000310581	NM_198253.2																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120458990	120458990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			848	60	399	0	ENST00000256646.2:c.6355C>T	p.Leu2119Phe	p.L2119F	ENST00000256646	NM_024408.3	2119	Ctt/Ttt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61722689	61722689	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			994	56	387	0	ENST00000401558.2:c.948G>C	p.Gln316His	p.Q316H	ENST00000401558	NM_003400.3	316	caG/caC																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362012	118362012	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	24	204	0	ENST00000534358.1:c.4798G>T	p.Glu1600Ter	p.E1600*	ENST00000534358	NM_005933.3	1600	Gag/Tag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66781598	66781598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			931	107	421	0	ENST00000307102.5:c.1006G>C	p.Asp336His	p.D336H	ENST00000307102	NM_002755.3	336	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1280	107	531	0	ENST00000269305.4:c.637C>G	p.Arg213Gly	p.R213G	ENST00000269305	NM_001126112.2	213	Cga/Gga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	140	197	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1315002	1315002	+	downstream_gene_variant	3'Flank	SNP	T	T	C			P-0000280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	48	315	0				ENST00000381566																																																																																	
CRLF2	64109	MSKCC	GRCh37	X	1321289	1321289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	22	197	0	ENST00000381566.1:c.466T>C	p.Phe156Leu	p.F156L	ENST00000381566		156	Ttc/Ctc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295243	1295243	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs35550267		P-0000283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			104	22	158	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023126	27023126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			54	18	53	0	ENST00000324856.7:c.232G>A	p.Glu78Lys	p.E78K	ENST00000324856	NM_006015.4	78	Gag/Aag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729949	30729949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	24	120	0	ENST00000359013.4:c.1545C>G	p.Asn515Lys	p.N515K	ENST00000359013	NM_001024847.2	515	aaC/aaG																																																																														
ATR	545	MSKCC	GRCh37	3	142272687	142272687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			893	204	537	0	ENST00000350721.4:c.2512G>C	p.Glu838Gln	p.E838Q	ENST00000350721	NM_001184.3	838	Gaa/Caa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295242	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0000283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	22	157	0				ENST00000310581	NM_198253.2																																																																																
PARK2	5071	MSKCC	GRCh37	6	161969986	161969986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	62	390	0	ENST00000366898.1:c.983G>T	p.Gly328Val	p.G328V	ENST00000366898	NM_004562.2	328	gGg/gTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493443	56493443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	25	204	0	ENST00000267101.3:c.2851G>C	p.Asp951His	p.D951H	ENST00000267101	NM_001982.3	951	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	53	216	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349886	15349886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	25	89	0	ENST00000263377.2:c.3766C>T	p.Arg1256Trp	p.R1256W	ENST00000263377	NM_058243.2	1256	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000284-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			103	42	200	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
CASP8	841	MSKCC	GRCh37	2	202131514	202131514	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000284-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	32	102	0	ENST00000358485.4:c.482G>A	p.Arg161Lys	p.R161K	ENST00000358485	NM_001080125.1	161	aGg/aAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539564	187539564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000284-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	93	293	0	ENST00000441802.2:c.8176C>T	p.Arg2726Ter	p.R2726*	ENST00000441802	NM_005245.3	2726	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0000284-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	16	206	0				ENST00000310581	NM_198253.2																																																																																
DICER1	23405	MSKCC	GRCh37	14	95570141	95570141	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000284-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	62	337	1	ENST00000343455.3:c.3592C>T	p.Gln1198Ter	p.Q1198*	ENST00000343455	NM_177438.2	1198	Caa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628137	187628161	+	frameshift_variant	Frame_Shift_Del	DEL	ACCACATGATGACGGTTCCTTCTGG	ACCACATGATGACGGTTCCTTCTGG	-			P-0000284-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	32	358	0	ENST00000441802.2:c.2821_2845delCCAGAAGGAACCGTCATCATGTGGT	p.Pro941Ter	p.P941*	ENST00000441802	NM_005245.3	941	CCAGAAGGAACCGTCATCATGTGGTta/ta																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570140	95570141	+	stop_gained,protein_altering_variant	Nonsense_Mutation	INS	-	-	AGCAAA			P-0000284-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	42	338	0	ENST00000343455.3:c.3592_3593insTTTGCT	p.Gln1198delinsLeuCysTer	p.Q1198delinsLC*	ENST00000343455	NM_177438.2	1198	caa/cTTTGCTaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	34	191	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	115	377	0	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551631	150551631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	74	277	0	ENST00000369026.2:c.376C>A	p.Leu126Met	p.L126M	ENST00000369026	NM_021960.4	126	Ctg/Atg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666657	206666657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	215	455	0	ENST00000367120.3:c.1991C>T	p.Ser664Leu	p.S664L	ENST00000367120	NM_014002.3	664	tCg/tTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278117	41278117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			671	143	385	0	ENST00000349496.5:c.1993G>T	p.Asp665Tyr	p.D665Y	ENST00000349496	NM_001904.3	665	Gac/Tac																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643488	52643488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			711	132	479	0	ENST00000394830.3:c.2408C>T	p.Ser803Phe	p.S803F	ENST00000394830	NM_018313.4	803	tCt/tTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468397	89468397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	85	268	0	ENST00000336596.2:c.1931C>T	p.Ser644Leu	p.S644L	ENST00000336596	NM_005233.5	644	tCa/tTa																																																																														
ATR	545	MSKCC	GRCh37	3	142185309	142185309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	103	310	0	ENST00000350721.4:c.6754G>A	p.Glu2252Lys	p.E2252K	ENST00000350721	NM_001184.3	2252	Gaa/Aaa																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84397806	84397806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			696	118	471	0	ENST00000321945.7:c.205C>G	p.Gln69Glu	p.Q69E	ENST00000321945	NM_139076.2	69	Cag/Gag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685259	86685259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	108	233	0	ENST00000274376.6:c.2975C>T	p.Ser992Phe	p.S992F	ENST00000274376	NM_002890.2	992	tCc/tTc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004922	150004922	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	126	399	0	ENST00000253339.5:c.1303C>T	p.Gln435Ter	p.Q435*	ENST00000253339		435	Cag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962804	2962804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	124	257	0	ENST00000396946.4:c.2104G>A	p.Glu702Lys	p.E702K	ENST00000396946	NM_032415.4	702	Gag/Aag																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431634	6431634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	86	213	0	ENST00000356142.4:c.187G>C	p.Asp63His	p.D63H	ENST00000356142	NM_018890.3	63	Gat/Cat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499823	8499823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	93	288	0	ENST00000356435.5:c.2146C>T	p.Arg716Cys	p.R716C	ENST00000356435		716	Cgc/Tgc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29068980	29068980	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	10	93	0	ENST00000282397.4:c.1A>T	p.Met1?	p.M1?	ENST00000282397	NM_002019.4	1	Atg/Ttg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950926	32950926	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	88	262	0	ENST00000380152.3:c.8752G>A	p.Glu2918Lys	p.E2918K	ENST00000380152		2918	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3801779	3801779	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	152	272	0	ENST00000262367.5:c.3727G>T	p.Glu1243Ter	p.E1243*	ENST00000262367	NM_004380.2	1243	Gag/Tag																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14038683	14038683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139782718		P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	58	159	0	ENST00000311895.7:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000311895	NM_005236.2	670	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144101	11144101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	84	389	0	ENST00000344626.4:c.3682G>T	p.Val1228Leu	p.V1228L	ENST00000344626	NM_003072.3	1228	Gtg/Ttg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259229	36259229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	81	276	0	ENST00000300305.3:c.262G>A	p.Glu88Lys	p.E88K	ENST00000300305		88	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938447	44938447	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	489	345	0	ENST00000377967.4:c.2995G>T	p.Glu999Ter	p.E999*	ENST00000377967	NM_021140.2	999	Gaa/Taa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028886	47028886	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	159	141	0	ENST00000329236.7:c.190C>T	p.Gln64Ter	p.Q64*	ENST00000329236	NM_001204466.1	64	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242733	16242733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			807	485	623	0	ENST00000375759.3:c.1354C>A	p.His452Asn	p.H452N	ENST00000375759	NM_015001.2	452	Cat/Aat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812182	212812182	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			999	385	584	0	ENST00000342788.4:c.394C>T	p.Gln132Ter	p.Q132*	ENST00000342788	NM_005235.2	132	Caa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	152	198	0				ENST00000310581	NM_198253.2																																																																																
TET1	80312	MSKCC	GRCh37	10	70451011	70451011	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	47	331	0	ENST00000373644.4:c.5851G>C	p.Asp1951His	p.D1951H	ENST00000373644	NM_030625.2	1951	Gac/Cac																																																																														
TET1	80312	MSKCC	GRCh37	10	70451110	70451110	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	54	349	0	ENST00000373644.4:c.5950G>C	p.Glu1984Gln	p.E1984Q	ENST00000373644	NM_030625.2	1984	Gag/Cag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488324	56488324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143726790		P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	174	277	0	ENST00000267101.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000267101	NM_001982.3	615	Gag/Aag																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14021928	14021928	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			929	137	395	0	ENST00000311895.7:c.628G>T	p.Glu210Ter	p.E210*	ENST00000311895	NM_005236.2	210	Gaa/Taa																																																																														
CBFB	865	MSKCC	GRCh37	16	67063702	67063702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	197	344	0	ENST00000412916.2:c.151G>A	p.Gly51Ser	p.G51S	ENST00000412916		51	Ggc/Agc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619045	37619045	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			985	107	456	0	ENST00000447079.4:c.721T>G	p.Ser241Ala	p.S241A	ENST00000447079	NM_015083.1	241	Tct/Gct																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866444	37866444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			753	99	322	0	ENST00000269571.5:c.749C>T	p.Ser250Phe	p.S250F	ENST00000269571		250	tCt/tTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	475	301	0	ENST00000269571.5:c.829G>C	p.Asp277His	p.D277H	ENST00000269571		277	Gac/Cac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	445	286	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868663	37868663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	382	216	0	ENST00000269571.5:c.1110C>G	p.Ile370Met	p.I370M	ENST00000269571		370	atC/atG																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226371	41226371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1213	141	629	0	ENST00000357654.3:c.4652C>G	p.Ser1551Cys	p.S1551C	ENST00000357654	NM_007294.3	1551	tCt/tGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435317	56435317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200066146		P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	46	158	0	ENST00000407977.2:c.1820C>T	p.Ser607Leu	p.S607L	ENST00000407977		607	tCg/tTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42799105	42799105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	131	181	0	ENST00000575354.2:c.4589G>C	p.Gly1530Ala	p.G1530A	ENST00000575354	NM_015125.3	1530	gGa/gCa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929362	44929362	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	443	349	0	ENST00000377967.4:c.2462C>G	p.Ser821Ter	p.S821*	ENST00000377967	NM_021140.2	821	tCa/tGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101345	27101354	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCGTGGC	GGCTCGTGGC	-			P-0000308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			560	275	594	0	ENST00000324856.7:c.4627_4636delGGCTCGTGGC	p.Gly1543LeufsTer19	p.G1543Lfs*19	ENST00000324856	NM_006015.4	1543	GGCTCGTGGCct/ct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000333-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	308	358	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000333-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			47	51	196	0				ENST00000310581	NM_198253.2																																																																																
DDR2	4921	MSKCC	GRCh37	1	162749914	162749914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			671	116	187	0	ENST00000367921.3:c.2446C>G	p.Gln816Glu	p.Q816E	ENST00000367921	NM_006182.2	816	Caa/Gaa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641222	12641222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	47	415	0	ENST00000251849.4:c.1076C>G	p.Ser359Cys	p.S359C	ENST00000251849	NM_002880.3	359	tCt/tGt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146734	185146734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	25	226	0	ENST00000265026.3:c.365G>A	p.Arg122Lys	p.R122K	ENST00000265026	NM_004721.4	122	aGg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	62	361	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578223	7578223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	89	431	0	ENST00000269305.4:c.626G>A	p.Arg209Lys	p.R209K	ENST00000269305	NM_001126112.2	209	aGa/aAa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41231365	41231365	+	intron_variant	Intron	SNP	C	C	T			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			57	25	48	0	ENST00000357654.3:c.4358-2734G>A		p.*1453*	ENST00000357654	NM_007294.3																																																																																
KEAP1	9817	MSKCC	GRCh37	19	10610279	10610279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	199	327	0	ENST00000171111.5:c.431C>A	p.Ser144Tyr	p.S144Y	ENST00000171111	NM_203500.1	144	tCc/tAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791250	42791250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	150	199	0	ENST00000575354.2:c.310G>A	p.Glu104Lys	p.E104K	ENST00000575354	NM_015125.3	104	Gag/Aag																																																																														
CIC	23152	MSKCC	GRCh37	19	42791373	42791373	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	178	247	0	ENST00000575354.2:c.433G>C	p.Glu145Gln	p.E145Q	ENST00000575354	NM_015125.3	145	Gag/Cag																																																																														
CIC	23152	MSKCC	GRCh37	19	42791790	42791790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	209	230	0	ENST00000575354.2:c.676G>C	p.Asp226His	p.D226H	ENST00000575354	NM_015125.3	226	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7576919	7576919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	103	222	0	ENST00000269305.4:c.927delC	p.Asn310ThrfsTer35	p.N310Tfs*35	ENST00000269305	NM_001126112.2	309	ccC/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576925	7576927	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TGC	TGC	-			P-0000363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	101	219	0	ENST00000269305.4:c.920-1_921delGCA		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000364-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	71	174	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000364-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	230	465	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242667	16242667	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000364-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	325	464	0	ENST00000375759.3:c.1288G>C	p.Asp430His	p.D430H	ENST00000375759	NM_015001.2	430	Gat/Cat																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652171	36652171	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000364-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	232	276	0	ENST00000244741.5:c.293C>A	p.Ser98Ter	p.S98*	ENST00000244741	NM_000389.4	98	tCa/tAa																																																																														
RB1	5925	MSKCC	GRCh37	13	48941643	48941643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000364-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			833	176	332	0	ENST00000267163.4:c.953C>G	p.Ser318Cys	p.S318C	ENST00000267163	NM_000321.2	318	tCt/tGt																																																																														
RB1	5925	MSKCC	GRCh37	13	49033844	49033844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000364-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1094	288	439	0	ENST00000267163.4:c.1981C>T	p.Arg661Trp	p.R661W	ENST00000267163	NM_000321.2	661	Cgg/Tgg																																																																														
RB1	5925	MSKCC	GRCh37	13	49033948	49033948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000364-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			641	170	306	0	ENST00000267163.4:c.2085G>A	p.Met695Ile	p.M695I	ENST00000267163	NM_000321.2	695	atG/atA																																																																														
RB1	5925	MSKCC	GRCh37	13	48919303	48919303	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000364-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			713	159	262	0	ENST00000267163.4:c.468delT	p.Asp156GlufsTer19	p.D156Efs*19	ENST00000267163	NM_000321.2	156	gaT/ga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088807	27088807	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000369-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	26	285	0	ENST00000324856.7:c.2416C>T	p.Gln806Ter	p.Q806*	ENST00000324856	NM_006015.4	806	Caa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	84	118	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682459	52682459	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			485	229	604	0	ENST00000394830.3:c.715-1G>C		p.X239_splice	ENST00000394830	NM_018313.4	239																																																																															
MTOR	2475	MSKCC	GRCh37	1	11227506	11227506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1013	150	672	0	ENST00000361445.4:c.4322G>C	p.Gly1441Ala	p.G1441A	ENST00000361445	NM_004958.3	1441	gGa/gCa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965614	25965614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	48	372	0	ENST00000435504.4:c.3592G>A	p.Glu1198Lys	p.E1198K	ENST00000435504		1198	Gag/Aag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967135	25967135	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	35	258	0	ENST00000435504.4:c.2071C>G	p.Pro691Ala	p.P691A	ENST00000435504		691	Cca/Gca																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257791	198257791	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			875	55	492	0	ENST00000335508.6:c.3661G>C	p.Glu1221Gln	p.E1221Q	ENST00000335508	NM_012433.2	1221	Gag/Cag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52621435	52621435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			730	70	642	0	ENST00000394830.3:c.2982G>C	p.Lys994Asn	p.K994N	ENST00000394830	NM_018313.4	994	aaG/aaC																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474716	138474716	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			950	73	443	0	ENST00000289153.2:c.277G>C	p.Glu93Gln	p.E93Q	ENST00000289153	NM_006219.2	93	Gaa/Caa																																																																														
TET2	54790	MSKCC	GRCh37	4	106164902	106164902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	24	169	0	ENST00000380013.4:c.3770C>T	p.Thr1257Met	p.T1257M	ENST00000380013	NM_001127208.2	1257	aCg/aTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045776	180045776	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	93	409	0	ENST00000261937.6:c.2995C>G	p.Gln999Glu	p.Q999E	ENST00000261937	NM_182925.4	999	Caa/Gaa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152382201	152382201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	54	311	0	ENST00000206249.3:c.1311G>A	p.Met437Ile	p.M437I	ENST00000206249	NM_000125.3	437	atG/atA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273254	55273254	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	39	316	0	ENST00000275493.2:c.3577G>T	p.Glu1193Ter	p.E1193*	ENST00000275493	NM_005228.3	1193	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845871	151845871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			860	55	534	0	ENST00000262189.6:c.13141G>A	p.Glu4381Lys	p.E4381K	ENST00000262189	NM_170606.2	4381	Gaa/Aaa																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006024	22006024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1541	298	333	0	ENST00000276925.6:c.379G>C	p.Asp127His	p.D127H	ENST00000276925	NM_004936.3	127	Gac/Cac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401310	139401310	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			764	65	422	0	ENST00000277541.6:c.3759C>G	p.Cys1253Trp	p.C1253W	ENST00000277541	NM_017617.3	1253	tgC/tgG																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94180574	94180574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	47	382	0	ENST00000323929.3:c.1594C>G	p.Gln532Glu	p.Q532E	ENST00000323929	NM_005591.3	532	Cag/Gag																																																																														
CBL	867	MSKCC	GRCh37	11	119149334	119149334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	31	284	0	ENST00000264033.4:c.1342G>C	p.Glu448Gln	p.E448Q	ENST00000264033	NM_005188.3	448	Gag/Cag																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609381	81609381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			719	173	549	0	ENST00000298171.2:c.979G>A	p.Glu327Lys	p.E327K	ENST00000298171	NM_000369.2	327	Gaa/Aaa																																																																														
BLM	641	MSKCC	GRCh37	15	91303880	91303880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	94	321	1	ENST00000355112.3:c.1277C>T	p.Ser426Leu	p.S426L	ENST00000355112	NM_000057.2	426	tCa/tTa																																																																														
CBFB	865	MSKCC	GRCh37	16	67063709	67063709	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	111	289	0	ENST00000412916.2:c.158C>G	p.Ser53Trp	p.S53W	ENST00000412916		53	tCg/tGg																																																																														
NF1	4763	MSKCC	GRCh37	17	29559126	29559126	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	47	137	0	ENST00000358273.4:c.3233C>G	p.Ser1078Ter	p.S1078*	ENST00000358273	NM_001042492.2	1078	tCa/tGa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222116	2222116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			624	41	517	0	ENST00000398665.3:c.2948C>G	p.Ser983Cys	p.S983C	ENST00000398665	NM_032482.2	983	tCc/tGc																																																																														
AXL	558	MSKCC	GRCh37	19	41727112	41727112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			958	206	485	0	ENST00000301178.4:c.370C>G	p.Gln124Glu	p.Q124E	ENST00000301178	NM_021913.4	124	Cag/Gag																																																																														
EP300	2033	MSKCC	GRCh37	22	41513664	41513664	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	83	261	0	ENST00000263253.7:c.568C>T	p.Gln190Ter	p.Q190*	ENST00000263253	NM_001429.3	190	Caa/Taa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030532	47030532	+	intron_variant	Intron	SNP	C	C	T			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	197	288	0	ENST00000329236.7:c.201+1635C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53222319	53222319	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	65	324	0	ENST00000375401.3:c.4513G>T	p.Glu1505Ter	p.E1505*	ENST00000375401	NM_004187.3	1505	Gag/Tag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222343	53222343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	58	352	0	ENST00000375401.3:c.4489G>C	p.Glu1497Gln	p.E1497Q	ENST00000375401	NM_004187.3	1497	Gag/Cag																																																																														
ATRX	546	MSKCC	GRCh37	X	76953110	76953110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	45	360	0	ENST00000373344.5:c.203C>T	p.Ser68Leu	p.S68L	ENST00000373344	NM_000489.3	68	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000377-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			298	551	318	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																														
EP300	2033	MSKCC	GRCh37	22	41573321	41573321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000377-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			1058	260	442	0	ENST00000263253.7:c.5606C>T	p.Pro1869Leu	p.P1869L	ENST00000263253	NM_001429.3	1869	cCc/cTc																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992106	11992106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000377-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			1514	162	329	0	ENST00000396373.4:c.196G>T	p.Val66Leu	p.V66L	ENST00000396373	NM_001987.4	66	Gta/Tta																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436647	110436647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000377-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			493	200	410	0	ENST00000375856.3:c.1754G>C	p.Arg585Pro	p.R585P	ENST00000375856	NM_003749.2	585	cGg/cCg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942492	17942492	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000377-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			956	201	307	0	ENST00000458235.1:c.2796G>C	p.Gln932His	p.Q932H	ENST00000458235	NM_000215.3	932	caG/caC																																																																														
RUNX1	861	MSKCC	GRCh37	21	36421143	36421143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000377-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			634	181	399	0	ENST00000300305.3:c.54G>A	p.Met18Ile	p.M18I	ENST00000300305		18	atG/atA																																																																														
APC	324	MSKCC	GRCh37	5	112177198	112177208	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTTCTCTCA	GAGTTCTCTCA	-			P-0000377-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			288	18	321	0	ENST00000257430.4:c.5908_5918del	p.Ser1970Ter	p.S1970*	ENST00000257430	NM_000038.5	1969	ctGAGTTCTCTCAgt/ctgt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	472173	472198	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTGCCTGGCTCTGGGGAAGTTTGG	TTGTGCCTGGCTCTGGGGAAGTTTGG	-			P-0000377-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			1314	154	458	0	ENST00000399788.2:c.603_628del	p.Gln202AspfsTer22	p.Q202Dfs*22	ENST00000399788	NM_001042603.1	201	acCCAAACTTCCCCAGAGCCAGGCACAAgg/acgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447340	49447341	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0000377-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			1243	209	409	0	ENST00000301067.7:c.757_758delGGinsTT	p.Gly253Leu	p.G253L	ENST00000301067	NM_003482.3	253	GGg/TTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0000384-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	628	202	0				ENST00000310581	NM_198253.2																																																																																
SPEN	23013	MSKCC	GRCh37	1	16259513	16259513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000384-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	39	204	0	ENST00000375759.3:c.6778G>C	p.Glu2260Gln	p.E2260Q	ENST00000375759	NM_015001.2	2260	Gag/Cag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643513	52643513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000384-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1070	120	488	0	ENST00000394830.3:c.2383G>A	p.Asp795Asn	p.D795N	ENST00000394830	NM_018313.4	795	Gat/Aat																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799677	72799677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000384-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			796	125	480	0	ENST00000325599.8:c.1492G>A	p.Glu498Lys	p.E498K	ENST00000325599	NM_018130.2	498	Gaa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142238561	142238561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000384-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			717	96	387	0	ENST00000350721.4:c.4332G>C	p.Arg1444Ser	p.R1444S	ENST00000350721	NM_001184.3	1444	agG/agC																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108652	8108652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000384-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			827	83	466	2	ENST00000585124.1:c.743G>A	p.Arg248His	p.R248H	ENST00000585124	NM_004217.3	248	cGc/cAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498163	498163	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000384-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1653	376	679	0	ENST00000399788.2:c.95delC	p.Pro32ArgfsTer34	p.P32Rfs*34	ENST00000399788	NM_001042603.1	32	cCg/cg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24143129	24143130	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0000384-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	178	363	1	ENST00000263121.7:c.363-2_363-1delAG		p.X121_splice	ENST00000263121	NM_003073.3	121																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000402-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	29	248	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000410-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	84	223	0				ENST00000310581	NM_198253.2																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153249503	153249503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000410-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	151	295	0	ENST00000281708.4:c.1275G>C	p.Trp425Cys	p.W425C	ENST00000281708	NM_033632.3	425	tgG/tgC																																																																														
FLT4	2324	MSKCC	GRCh37	5	180051053	180051053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000410-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	113	313	0	ENST00000261937.6:c.1430G>A	p.Arg477Gln	p.R477Q	ENST00000261937	NM_182925.4	477	cGg/cAg																																																																														
RB1	5925	MSKCC	GRCh37	13	49030350	49030350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000410-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	260	302	0	ENST00000267163.4:c.1825C>T	p.Pro609Ser	p.P609S	ENST00000267163	NM_000321.2	609	Cct/Tct																																																																														
RB1	5925	MSKCC	GRCh37	13	49037966	49037966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000410-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	303	270	0	ENST00000267163.4:c.2206C>T	p.Gln736Ter	p.Q736*	ENST00000267163	NM_000321.2	736	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	49039365	49039365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000410-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	657	732	0	ENST00000267163.4:c.2350C>T	p.His784Tyr	p.H784Y	ENST00000267163	NM_000321.2	784	Cac/Tac																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659729	227659743	+	inframe_deletion	In_Frame_Del	DEL	CTGACGGTCCTCTGG	CTGACGGTCCTCTGG	-			P-0000410-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	113	477	0	ENST00000305123.5:c.3712_3726delCCAGAGGACCGTCAG	p.Pro1238_Gln1242del	p.P1238_Q1242del	ENST00000305123	NM_005544.2	1238	CCAGAGGACCGTCAG/-																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652134	36652135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000410-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	115	354	0	ENST00000244741.5:c.259dup	p.Asp87GlyfsTer2	p.D87Gfs*2	ENST00000244741	NM_000389.4	86	cgg/cGgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000415-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	45	141	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0000415-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	104	354	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577191	64577206	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGAGGCTGTTCCA	GGCTGAGGCTGTTCCA	-			P-0000415-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			137	50	380	0	ENST00000337652.1:c.376_391delTGGAACAGCCTCAGCC	p.Trp126AlafsTer23	p.W126Afs*23	ENST00000337652	NM_130803.2	126	TGGAACAGCCTCAGCCgc/gc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54958123	54958125	+	frameshift_variant	Frame_Shift_Ins	INS	TAA	TAA	GACT			P-0000415-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	79	402	0	ENST00000312783.6:c.482_484delTTAinsAGTC	p.Leu161GlnfsTer6	p.L161Qfs*6	ENST00000312783	NM_198436.1	161	cTTAaa/cAGTCaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	130	152	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	93	354	0	ENST00000269305.4:c.80delC	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	286	293	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	221	467	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	185	414	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262615	16262615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	126	242	1	ENST00000375759.3:c.9880C>T	p.Gln3294Ter	p.Q3294*	ENST00000375759	NM_015001.2	3294	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	157	263	0	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101212	27101212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	196	356	0	ENST00000324856.7:c.4494G>A	p.Trp1498Ter	p.W1498*	ENST00000324856	NM_006015.4	1498	tgG/tgA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105838	27105838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			586	38	325	0	ENST00000324856.7:c.5449G>A	p.Val1817Ile	p.V1817I	ENST00000324856	NM_006015.4	1817	Gta/Ata																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310517	65310517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	154	326	0	ENST00000342505.4:c.2171G>A	p.Arg724His	p.R724H	ENST00000342505	NM_002227.2	724	cGt/cAt																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551912	150551912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			534	98	304	0	ENST00000369026.2:c.95G>A	p.Gly32Glu	p.G32E	ENST00000369026	NM_021960.4	32	gGa/gAa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843598	156843598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	157	399	3	ENST00000524377.1:c.1024C>T	p.Arg342Trp	p.R342W	ENST00000524377	NM_002529.3	342	Cgg/Tgg																																																																														
IL10	3586	MSKCC	GRCh37	1	206945724	206945724	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	128	241	0	ENST00000423557.1:c.57C>G	p.Ser19Arg	p.S19R	ENST00000423557	NM_000572.2	19	agC/agG																																																																														
PARP1	142	MSKCC	GRCh37	1	226552839	226552839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	164	316	0	ENST00000366794.5:c.2522G>A	p.Arg841His	p.R841H	ENST00000366794	NM_001618.3	841	cGt/cAt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467108	25467108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			311	123	357	0	ENST00000264709.3:c.1767G>T	p.Lys589Asn	p.K589N	ENST00000264709	NM_175629.2	589	aaG/aaT																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965143	25965143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	226	304	0	ENST00000435504.4:c.4063G>T	p.Gly1355Cys	p.G1355C	ENST00000435504		1355	Ggt/Tgt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182192	99182192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	171	320	0	ENST00000074304.5:c.2257G>A	p.Ala753Thr	p.A753T	ENST00000074304	NM_001134224.1	753	Gcc/Acc																																																																														
CASP8	841	MSKCC	GRCh37	2	202137370	202137370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	165	256	0	ENST00000358485.4:c.598G>T	p.Asp200Tyr	p.D200Y	ENST00000358485	NM_001080125.1	200	Gat/Tat																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027093	71027093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200629338		P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	125	199	0	ENST00000318789.4:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000318789	NM_032682.5	412	Gcc/Acc																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72866503	72866503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	283	323	0	ENST00000325599.8:c.760C>T	p.Arg254Ter	p.R254*	ENST00000325599	NM_018130.2	254	Cga/Tga																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72890207	72890207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			734	53	319	0	ENST00000325599.8:c.475C>A	p.Gln159Lys	p.Q159K	ENST00000325599	NM_018130.2	159	Caa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142285059	142285059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			551	301	437	0	ENST00000350721.4:c.196G>A	p.Val66Met	p.V66M	ENST00000350721	NM_001184.3	66	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	241	343	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	291	382	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539936	187539936	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	238	351	0	ENST00000441802.2:c.7804G>T	p.Glu2602Ter	p.E2602*	ENST00000441802	NM_005245.3	2602	Gaa/Taa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149433673	149433673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	149	346	0	ENST00000286301.3:c.2878G>A	p.Ala960Thr	p.A960T	ENST00000286301	NM_005211.3	960	Gcc/Acc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459879	149459879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	108	253	0	ENST00000286301.3:c.328G>A	p.Val110Met	p.V110M	ENST00000286301	NM_005211.3	110	Gtg/Atg																																																																														
NPM1	4869	MSKCC	GRCh37	5	170832372	170832372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	100	186	0	ENST00000296930.5:c.736G>A	p.Asp246Asn	p.D246N	ENST00000296930	NM_002520.6	246	Gac/Aac																																																																														
IRF4	3662	MSKCC	GRCh37	6	401589	401589	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	99	298	0	ENST00000380956.4:c.911T>C	p.Ile304Thr	p.I304T	ENST00000380956	NM_001195286.1	304	aTt/aCt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652158	36652158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	170	295	0	ENST00000244741.5:c.280C>T	p.Arg94Trp	p.R94W	ENST00000244741	NM_000389.4	94	Cgg/Tgg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001304	150001304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	293	464	0	ENST00000253339.5:c.2300G>A	p.Arg767His	p.R767H	ENST00000253339		767	cGt/cAt																																																																														
HGF	3082	MSKCC	GRCh37	7	81381472	81381472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	277	433	0	ENST00000222390.5:c.589C>T	p.Arg197Cys	p.R197C	ENST00000222390	NM_000601.4	197	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	174	274	0	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371722	55371722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	152	186	0	ENST00000297316.4:c.412C>G	p.Arg138Gly	p.R138G	ENST00000297316	NM_022454.3	138	Cgg/Ggg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484308	8484308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			716	62	446	1	ENST00000356435.5:c.3224T>C	p.Leu1075Pro	p.L1075P	ENST00000356435		1075	cTg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971066	21971066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	124	188	0	ENST00000304494.5:c.292C>T	p.His98Tyr	p.H98Y	ENST00000304494	NM_000077.4	98	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971066	21971066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	124	188	0	ENST00000304494.5:c.292C>T	p.His98Tyr	p.H98Y	ENST00000304494	NM_000077.4	98	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971066	21971066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	124	188	0	ENST00000304494.5:c.292C>T	p.His98Tyr	p.H98Y	ENST00000304494	NM_000077.4	98	Cac/Tac																																																																														
SYK	6850	MSKCC	GRCh37	9	93627350	93627350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	176	374	0	ENST00000375746.1:c.817C>T	p.Arg273Cys	p.R273C	ENST00000375746	NM_001174167.1	273	Cgt/Tgt																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248090	110248090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	56	380	0	ENST00000374672.4:c.1382G>A	p.Cys461Tyr	p.C461Y	ENST00000374672	NM_004235.4	461	tGc/tAc																																																																														
TET1	80312	MSKCC	GRCh37	10	70406043	70406043	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	247	422	0	ENST00000373644.4:c.3557T>C	p.Ile1186Thr	p.I1186T	ENST00000373644	NM_030625.2	1186	aTa/aCa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123263395	123263395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	212	364	0	ENST00000358487.5:c.1348C>T	p.Arg450Cys	p.R450C	ENST00000358487	NM_000141.4	450	Cgc/Tgc																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161493	2161493	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	138	395	0	ENST00000434045.2:c.34G>C	p.Ala12Pro	p.A12P	ENST00000434045	NM_001127598.1	12	Gcc/Ccc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136190	64136190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	103	296	0	ENST00000334205.4:c.1349C>T	p.Thr450Met	p.T450M	ENST00000334205	NM_003942.2	450	aCg/aTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118371775	118371775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	194	332	0	ENST00000534358.1:c.6232C>T	p.Arg2078Cys	p.R2078C	ENST00000534358	NM_005933.3	2078	Cgt/Tgt																																																																														
CBL	867	MSKCC	GRCh37	11	119155983	119155983	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202065722		P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	251	449	0	ENST00000264033.4:c.1648C>T	p.Arg550Trp	p.R550W	ENST00000264033	NM_005188.3	550	Cgg/Tgg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12043940	12043940	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	44	300	0	ENST00000396373.4:c.1319A>T	p.Gln440Leu	p.Q440L	ENST00000396373	NM_001987.4	440	cAg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428627	49428627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	151	390	0	ENST00000301067.7:c.10323G>T	p.Gln3441His	p.Q3441H	ENST00000301067	NM_003482.3	3441	caG/caT																																																																														
POLE	5426	MSKCC	GRCh37	12	133210935	133210935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	143	310	0	ENST00000320574.5:c.5841G>T	p.Glu1947Asp	p.E1947D	ENST00000320574	NM_006231.2	1947	gaG/gaT																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589834	28589834	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201923726		P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	108	309	0	ENST00000241453.7:c.2546G>A	p.Arg849His	p.R849H	ENST00000241453	NM_004119.2	849	cGt/cAt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893641	28893641	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	129	305	0	ENST00000282397.4:c.3205G>T	p.Glu1069Ter	p.E1069*	ENST00000282397	NM_002019.4	1069	Gaa/Taa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434482	110434482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	106	173	0	ENST00000375856.3:c.3919G>A	p.Gly1307Arg	p.G1307R	ENST00000375856	NM_003749.2	1307	Ggg/Agg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572013	95572013	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	321	393	0	ENST00000343455.3:c.3093+2T>C		p.X1031_splice	ENST00000343455	NM_177438.2	1031																																																																															
TSC2	7249	MSKCC	GRCh37	16	2130352	2130352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	36	344	0	ENST00000219476.3:c.3584C>T	p.Ala1195Val	p.A1195V	ENST00000219476	NM_000548.3	1195	gCg/gTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857299	9857299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	145	350	0	ENST00000330684.3:c.4102C>A	p.Leu1368Ile	p.L1368I	ENST00000330684	NM_001134407.1	1368	Ctc/Atc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660550	67660550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	43	502	0	ENST00000264010.4:c.1450C>T	p.Gln484Ter	p.Q484*	ENST00000264010	NM_006565.3	484	Cag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15976784	15976784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			574	270	541	0	ENST00000268712.3:c.3770G>T	p.Gly1257Val	p.G1257V	ENST00000268712	NM_006311.3	1257	gGg/gTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	130	225	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
RARA	5914	MSKCC	GRCh37	17	38512362	38512362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	16	234	0	ENST00000254066.5:c.1273G>A	p.Gly425Arg	p.G425R	ENST00000254066	NM_000964.3	425	Gga/Aga																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78681708	78681708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	40	360	0	ENST00000306801.3:c.416G>A	p.Arg139His	p.R139H	ENST00000306801	NM_020761.2	139	cGc/cAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796960	78796960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	177	305	0	ENST00000306801.3:c.1073G>T	p.Arg358Met	p.R358M	ENST00000306801	NM_020761.2	358	aGg/aTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222930	5222930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	98	242	2	ENST00000357368.4:c.2873G>A	p.Arg958His	p.R958H	ENST00000357368	NM_002850.3	958	cGc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244098	5244098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs73545312		P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	142	523	0	ENST00000357368.4:c.1384G>A	p.Val462Ile	p.V462I	ENST00000357368	NM_002850.3	462	Gtc/Atc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15297687	15297687	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	77	335	0	ENST00000263388.2:c.1951+2T>C		p.X651_splice	ENST00000263388	NM_000435.2	651																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303199	15303199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	157	375	0	ENST00000263388.2:c.329G>A	p.Arg110His	p.R110H	ENST00000263388	NM_000435.2	110	cGt/cAt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624804	9624804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	140	268	0	ENST00000353224.5:c.173G>A	p.Cys58Tyr	p.C58Y	ENST00000353224	NM_177990.2	58	tGc/tAc																																																																														
SRC	6714	MSKCC	GRCh37	20	36031597	36031597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	143	336	0	ENST00000358208.4:c.1426G>A	p.Asp476Asn	p.D476N	ENST00000358208		476	Gac/Aac																																																																														
AURKA	6790	MSKCC	GRCh37	20	54948483	54948483	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			658	207	485	0	ENST00000312783.6:c.835G>C	p.Val279Leu	p.V279L	ENST00000312783	NM_198436.1	279	Gta/Cta																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513327	44513327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	184	305	0	ENST00000291552.4:c.608G>A	p.Arg203His	p.R203H	ENST00000291552	NM_006758.2	203	cGt/cAt																																																																														
NF2	4771	MSKCC	GRCh37	22	30000054	30000054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	190	418	0	ENST00000338641.4:c.67A>G	p.Thr23Ala	p.T23A	ENST00000338641	NM_000268.3	23	Acc/Gcc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938475	44938475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	336	511	0	ENST00000377967.4:c.3023C>T	p.Ala1008Val	p.A1008V	ENST00000377967	NM_021140.2	1008	gCa/gTa																																																																														
ARAF	369	MSKCC	GRCh37	X	47429346	47429346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	213	469	0	ENST00000377045.4:c.1474G>A	p.Val492Ile	p.V492I	ENST00000377045	NM_001654.4	492	Gtc/Atc																																																																														
AR	367	MSKCC	GRCh37	X	66765883	66765883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	158	451	0	ENST00000374690.3:c.895G>A	p.Ala299Thr	p.A299T	ENST00000374690	NM_000044.3	299	Gca/Aca																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215372	123215372	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			789	49	415	0	ENST00000218089.9:c.2918T>C	p.Leu973Pro	p.L973P	ENST00000218089	NM_001042749.1	973	cTa/cCa																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363510	40363519	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTGATGGA	TGCTGATGGA	-			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	161	320	0	ENST00000397332.2:c.710_719delTCCATCAGCA	p.Ile237AsnfsTer46	p.I237Nfs*46	ENST00000397332	NM_001033082.2	237	aTCCATCAGCAa/aa																																																																														
CASP8	841	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	221	431	0	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504296	8504297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	44	338	0	ENST00000356435.5:c.1786dupT	p.Ser596PhefsTer8	p.S596Ffs*8	ENST00000356435		596	tct/tTct																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670396	88670396	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	199	401	0	ENST00000360948.2:c.1290delT	p.Phe430LeufsTer5	p.F430Lfs*5	ENST00000360948	NM_001012338.2	430	ttT/tt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760967	59760967	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000448-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			760	72	476	0	ENST00000259008.2:c.3440delA	p.Asn1147MetfsTer3	p.N1147Mfs*3	ENST00000259008	NM_032043.2	1147	aAt/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0000457-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	182	195	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27100375	27100375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000457-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			716	490	417	0	ENST00000324856.7:c.4087C>T	p.Gln1363Ter	p.Q1363*	ENST00000324856	NM_006015.4	1363	Caa/Taa																																																																														
KIT	3815	MSKCC	GRCh37	4	55594094	55594094	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0000457-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	243	430	0	ENST00000288135.5:c.1879+1G>A		p.X627_splice	ENST00000288135	NM_000222.2	627																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618602	37618602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000457-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			686	507	407	0	ENST00000447079.4:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000447079	NM_015083.1	93	cGa/cAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942738	44942752	+	inframe_deletion	In_Frame_Del	DEL	TCCTGCTTTTGTGCG	TCCTGCTTTTGTGCG	-			P-0000457-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	394	574	0	ENST00000377967.4:c.3319_3333delCCTGCTTTTGTGCGT	p.Pro1107_Arg1111del	p.P1107_R1111del	ENST00000377967	NM_021140.2	1106	ctTCCTGCTTTTGTGCGt/ctt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000460-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	41	191	0				ENST00000310581	NM_198253.2																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67591247	67591249	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGT	GGT	-			P-0000460-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	169	243	0	ENST00000274335.5:c.1748_1750delGGT		p.X583_splice	ENST00000274335		583																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0000467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	174	549	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	54	180	0				ENST00000310581	NM_198253.2																																																																																
SPEN	23013	MSKCC	GRCh37	1	16254973	16254973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	83	255	0	ENST00000375759.3:c.2238G>T	p.Arg746Ser	p.R746S	ENST00000375759	NM_015001.2	746	agG/agT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295249	1295249	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0000475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	54	239	0				ENST00000310581	NM_198253.2																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32166836	32166836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	109	325	0	ENST00000375023.3:c.4402C>T	p.Leu1468Phe	p.L1468F	ENST00000375023	NM_004557.3	1468	Ctc/Ttc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166917	32166917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	52	172	0	ENST00000375023.3:c.4321C>T	p.Pro1441Ser	p.P1441S	ENST00000375023	NM_004557.3	1441	Cct/Tct																																																																														
ABL1	25	MSKCC	GRCh37	9	133748322	133748322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	125	484	0	ENST00000318560.5:c.983G>A	p.Arg328Lys	p.R328K	ENST00000318560	NM_005157.4	328	aGg/aAg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557507	21557507	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	140	524	0	ENST00000382592.4:c.2338G>T	p.Glu780Ter	p.E780*	ENST00000382592	NM_014572.2	780	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000506-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	98	157	0				ENST00000310581	NM_198253.2																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3789580	3789580	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0000506-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	340	281	1	ENST00000262367.5:c.4279A>T	p.Arg1427Trp	p.R1427W	ENST00000262367	NM_004380.2	1427	Agg/Tgg																																																																														
CDH1	999	MSKCC	GRCh37	16	68835698	68835698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000506-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	112	483	0	ENST00000261769.5:c.289C>A	p.His97Asn	p.H97N	ENST00000261769	NM_004360.3	97	Cat/Aat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343516	118343522	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCTAC	ACTCTAC	-			P-0000506-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	120	227	0	ENST00000534358.1:c.1643_1649delCTCTACA	p.Thr548LysfsTer17	p.T548Kfs*17	ENST00000534358	NM_005933.3	548	ACTCTACaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			311	115	536	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			673	139	687	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521613	89521613	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0000516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	52	271	0	ENST00000336596.2:c.2691-1G>T		p.X897_splice	ENST00000336596	NM_005233.5	897																																																																															
GATA2	2624	MSKCC	GRCh37	3	128200118	128200118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	73	307	0	ENST00000341105.2:c.1187G>T	p.Arg396Leu	p.R396L	ENST00000341105	NM_032638.4	396	cGg/cTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106193967	106193967	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	54	275	0	ENST00000380013.4:c.4429G>T	p.Glu1477Ter	p.E1477*	ENST00000380013	NM_001127208.2	1477	Gaa/Taa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931460	131931460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	47	224	0	ENST00000265335.6:c.2165A>G	p.Lys722Arg	p.K722R	ENST00000265335		722	aAg/aGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	105	251	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	105	251	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	105	251	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22143028	22143028	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	86	475	0	ENST00000215832.6:c.679A>T	p.Ile227Phe	p.I227F	ENST00000215832	NM_002745.4	227	Atc/Ttc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911520	39911520	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	88	353	0	ENST00000378444.4:c.5110A>C	p.Ser1704Arg	p.S1704R	ENST00000378444	NM_001123385.1	1704	Agt/Cgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000533-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	274	435	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000533-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	30	245	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108224586	108224586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000533-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	116	346	0	ENST00000278616.4:c.8765G>T	p.Gly2922Val	p.G2922V	ENST00000278616	NM_000051.3	2922	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000533-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	67	169	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1303	198	354	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			654	608	294	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794824	242794824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	418	324	0	ENST00000334409.5:c.385G>T	p.Ala129Ser	p.A129S	ENST00000334409	NM_005018.2	129	Gcc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295217	1295217	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	76	120	0				ENST00000310581	NM_198253.2																																																																																
HGF	3082	MSKCC	GRCh37	7	81381563	81381563	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			761	530	480	0	ENST00000222390.5:c.498C>G	p.Ser166Arg	p.S166R	ENST00000222390	NM_000601.4	166	agC/agG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	512	270	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29576117	29576117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2081	582	475	0	ENST00000358273.4:c.4090G>T	p.Val1364Leu	p.V1364L	ENST00000358273	NM_001042492.2	1364	Gtg/Ttg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438255	56438255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1144	424	294	3	ENST00000407977.2:c.738G>T	p.Arg246Ser	p.R246S	ENST00000407977		246	agG/agT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105618	11105618	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	268	279	0	ENST00000344626.4:c.1534G>T	p.Glu512Ter	p.E512*	ENST00000344626	NM_003072.3	512	Gag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101152	41101152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			638	107	167	0	ENST00000373198.4:c.1204C>A	p.Gln402Lys	p.Q402K	ENST00000373198	NM_133170.3	402	Cag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	145	195	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	145	264	2	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393656	139393656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	117	290	0	ENST00000277541.6:c.5990C>T	p.Thr1997Met	p.T1997M	ENST00000277541	NM_017617.3	1997	aCg/aTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16203076	16203076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	197	186	0	ENST00000375759.3:c.784G>T	p.Ala262Ser	p.A262S	ENST00000375759	NM_015001.2	262	Gca/Tca																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468324	120468324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	149	231	0	ENST00000256646.2:c.4115G>A	p.Arg1372Gln	p.R1372Q	ENST00000256646	NM_024408.3	1372	cGg/cAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120506432	120506432	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	178	327	0	ENST00000256646.2:c.1682-2A>C		p.X561_splice	ENST00000256646	NM_024408.3	561																																																																															
DDR2	4921	MSKCC	GRCh37	1	162749986	162749986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	305	386	0	ENST00000367921.3:c.2518C>T	p.Pro840Ser	p.P840S	ENST00000367921	NM_006182.2	840	Ccc/Tcc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243828186	243828186	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	257	299	0	ENST00000263826.5:c.173-1G>A		p.X58_splice	ENST00000263826	NM_005465.4	58																																																																															
ALK	238	MSKCC	GRCh37	2	29416302	29416302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	173	408	0	ENST00000389048.3:c.4651C>T	p.Pro1551Ser	p.P1551S	ENST00000389048	NM_004304.4	1551	Ccg/Tcg																																																																														
ALK	238	MSKCC	GRCh37	2	29450440	29450440	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	149	440	0	ENST00000389048.3:c.2914G>A	p.Val972Met	p.V972M	ENST00000389048	NM_004304.4	972	Gtg/Atg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098815	178098815	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	645	599	0	ENST00000397062.3:c.230A>G	p.Asp77Gly	p.D77G	ENST00000397062	NM_006164.4	77	gAt/gGt																																																																														
CASP8	841	MSKCC	GRCh37	2	202141568	202141568	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	349	447	0	ENST00000358485.4:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000358485	NM_001080125.1	286	Caa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142279214	142279214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	458	420	0	ENST00000350721.4:c.1432G>A	p.Glu478Lys	p.E478K	ENST00000350721	NM_001184.3	478	Gaa/Aaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189526287	189526287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	187	292	0	ENST00000264731.3:c.551C>T	p.Ser184Leu	p.S184L	ENST00000264731	NM_003722.4	184	tCg/tTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106157371	106157371	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	355	221	1	ENST00000380013.4:c.2272C>T	p.Gln758Ter	p.Q758*	ENST00000380013	NM_001127208.2	758	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541114	187541114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	347	270	0	ENST00000441802.2:c.6626C>T	p.Pro2209Leu	p.P2209L	ENST00000441802	NM_005245.3	2209	cCg/cTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38942955	38942955	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			568	526	258	0	ENST00000357387.3:c.5032C>T	p.Gln1678Ter	p.Q1678*	ENST00000357387	NM_152756.3	1678	Caa/Taa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520282	176520282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	99	292	0	ENST00000292408.4:c.1201C>G	p.Arg401Gly	p.R401G	ENST00000292408	NM_213647.1	401	Cgc/Ggc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023057	150023057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	491	563	0	ENST00000253339.5:c.206C>T	p.Pro69Leu	p.P69L	ENST00000253339		69	cCc/cTc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426893	6426893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	454	383	2	ENST00000356142.4:c.86C>T	p.Pro29Leu	p.P29L	ENST00000356142	NM_018890.3	29	cCt/cTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341919	8341919	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	1128	419	0	ENST00000356435.5:c.4721A>C	p.Lys1574Thr	p.K1574T	ENST00000356435		1574	aAg/aCg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485940	8485940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	1035	473	0	ENST00000356435.5:c.2877G>T	p.Arg959Ser	p.R959S	ENST00000356435		959	agG/agT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521469	8521469	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1183	328	359	0	ENST00000356435.5:c.769T>A	p.Cys257Ser	p.C257S	ENST00000356435		257	Tgt/Agt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87339230	87339230	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	333	287	0	ENST00000277120.3:c.812T>G	p.Leu271Arg	p.L271R	ENST00000277120		271	cTt/cGt																																																																														
SYK	6850	MSKCC	GRCh37	9	93637098	93637098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	274	287	0	ENST00000375746.1:c.1148G>A	p.Gly383Glu	p.G383E	ENST00000375746	NM_001174167.1	383	gGa/gAa																																																																														
ABL1	25	MSKCC	GRCh37	9	133750384	133750384	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	281	561	0	ENST00000318560.5:c.1215G>A	p.Trp405Ter	p.W405*	ENST00000318560	NM_005157.4	405	tgG/tgA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391196	139391196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	126	280	0	ENST00000277541.6:c.6995C>T	p.Pro2332Leu	p.P2332L	ENST00000277541	NM_017617.3	2332	cCa/cTa																																																																														
RET	5979	MSKCC	GRCh37	10	43595906	43595906	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	112	443	0	ENST00000355710.3:c.74-1G>A		p.X25_splice	ENST00000355710	NM_020975.4	25																																																																															
TET1	80312	MSKCC	GRCh37	10	70446209	70446209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	318	438	0	ENST00000373644.4:c.5149G>A	p.Asp1717Asn	p.D1717N	ENST00000373644	NM_030625.2	1717	Gat/Aat																																																																														
TET1	80312	MSKCC	GRCh37	10	70451230	70451230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	136	333	1	ENST00000373644.4:c.6070C>T	p.Arg2024Trp	p.R2024W	ENST00000373644	NM_030625.2	2024	Cgg/Tgg																																																																														
LMO1	4004	MSKCC	GRCh37	11	8284891	8284891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	266	569	0	ENST00000335790.3:c.19G>A	p.Glu7Lys	p.E7K	ENST00000335790	NM_002315.2	7	Gag/Aag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246137	46246137	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	345	278	0	ENST00000334344.6:c.4231C>T	p.Gln1411Ter	p.Q1411*	ENST00000334344	NM_152641.2	1411	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431861	49431861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	119	263	1	ENST00000301067.7:c.9278C>T	p.Pro3093Leu	p.P3093L	ENST00000301067	NM_003482.3	3093	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443980	49443980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			311	95	298	0	ENST00000301067.7:c.3391C>T	p.Pro1131Ser	p.P1131S	ENST00000301067	NM_003482.3	1131	Ccg/Tcg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28913332	28913332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	196	507	0	ENST00000282397.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000282397	NM_002019.4	821	Gag/Aag																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012396	29012396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	211	407	0	ENST00000282397.4:c.475C>T	p.Arg159Trp	p.R159W	ENST00000282397	NM_002019.4	159	Cgg/Tgg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930724	32930724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	128	307	0	ENST00000380152.3:c.7595C>T	p.Pro2532Leu	p.P2532L	ENST00000380152		2532	cCc/cTc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514007	103514007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	142	298	0	ENST00000355739.4:c.823G>A	p.Glu275Lys	p.E275K	ENST00000355739	NM_000123.3	275	Gag/Aag																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68353854	68353854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			756	489	387	1	ENST00000487270.1:c.689A>G	p.Glu230Gly	p.E230G	ENST00000487270	NM_133509.3	230	gAa/gGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032038	10032038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	143	578	0	ENST00000330684.3:c.785C>T	p.Ser262Phe	p.S262F	ENST00000330684	NM_001134407.1	262	tCt/tTt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041849	14041849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	351	457	0	ENST00000311895.7:c.2396G>A	p.Arg799Gln	p.R799Q	ENST00000311895	NM_005236.2	799	cGg/cAg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041923	14041923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	145	346	0	ENST00000311895.7:c.2470G>A	p.Asp824Asn	p.D824N	ENST00000311895	NM_005236.2	824	Gat/Aat																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647610	23647610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			620	223	408	0	ENST00000261584.4:c.257C>T	p.Thr86Ile	p.T86I	ENST00000261584	NM_024675.3	86	aCc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	176	484	0	ENST00000269305.4:c.859G>A	p.Glu287Lys	p.E287K	ENST00000269305	NM_001126112.2	287	Gag/Aag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682533	37682533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	82	212	0	ENST00000447079.4:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000447079	NM_015083.1	1242	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747087	40747087	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	270	388	0	ENST00000373198.4:c.2995T>G	p.Ser999Ala	p.S999A	ENST00000373198	NM_133170.3	999	Tcc/Gcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40864896	40864896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	250	337	0	ENST00000373198.4:c.2372G>A	p.Arg791Lys	p.R791K	ENST00000373198	NM_133170.3	791	aGa/aAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41572413	41572413	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	220	348	0	ENST00000263253.7:c.4942C>T	p.Gln1648Ter	p.Q1648*	ENST00000263253	NM_001429.3	1648	Cag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66765779	66765779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	294	733	0	ENST00000374690.3:c.791G>A	p.Arg264Gln	p.R264Q	ENST00000374690	NM_000044.3	264	cGg/cAg																																																																														
AR	367	MSKCC	GRCh37	X	66863145	66863145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			692	448	760	0	ENST00000374690.3:c.1664C>T	p.Pro555Leu	p.P555L	ENST00000374690	NM_000044.3	555	cCa/cTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185190	123185190	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			954	528	549	0	ENST00000218089.9:c.1142A>G	p.Asp381Gly	p.D381G	ENST00000218089	NM_001042749.1	381	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577535	7577536	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	110	262	0	ENST00000269305.4:c.745dupA	p.Arg249LysfsTer15	p.R249Kfs*15	ENST00000269305	NM_001126112.2	249	agg/aAgg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227698	53227711	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGCTCGGGACA	CAGAGCTCGGGACA	-			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	267	646	0	ENST00000375401.3:c.2477_2490delTGTCCCGAGCTCTG	p.Val826GlyfsTer22	p.V826Gfs*22	ENST00000375401	NM_004187.3	826	gTGTCCCGAGCTCTG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971027	21971028	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	670	272	0	ENST00000304494.5:c.330_331delinsAA	p.Trp110_Gly111delinsTer	p.W110_G111delins*	ENST00000304494	NM_000077.4	110	tgGGgc/tgAAgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971027	21971028	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	670	272	0	ENST00000304494.5:c.330_331delinsAA	p.Trp110_Gly111delinsTer	p.W110_G111delins*	ENST00000304494	NM_000077.4	110	tgGGgc/tgAAgc																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233091	69233092	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	134	300	0	ENST00000462284.1:c.956_957delCCinsTT	p.Pro319Leu	p.P319L	ENST00000462284	NM_002392.5	319	cCC/cTT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181931	32181932	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	551	423	0	ENST00000375023.3:c.2122_2123delCCinsTT	p.Pro708Phe	p.P708F	ENST00000375023	NM_004557.3	708	CCc/TTc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38942955	38942955	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	502	258	0	ENST00000357387.3:c.5032delinsTT	p.Gln1678LeufsTer10	p.Q1678Lfs*10	ENST00000357387	NM_152756.3	1678	Caa/TTaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295794	212295795	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	235	388	0	ENST00000342788.4:c.2518_2519delGTinsAG	p.Val840Ser	p.V840S	ENST00000342788	NM_005235.2	840	GTt/AGt																																																																														
POLE	5426	MSKCC	GRCh37	12	133242010	133242011	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0000582-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	178	326	0	ENST00000320574.5:c.2345_2346delCCinsTT	p.Ala782Val	p.A782V	ENST00000320574	NM_006231.2	782	gCC/gTT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000587-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	95	151	0				ENST00000310581	NM_198253.2																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0000587-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	212	332	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662320	227662320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000587-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	55	202	0	ENST00000305123.5:c.1135G>C	p.Ala379Pro	p.A379P	ENST00000305123	NM_005544.2	379	Gct/Cct																																																																														
RB1	5925	MSKCC	GRCh37	13	48934152	48934152	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0000587-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	18	234	0	ENST00000267163.4:c.608-1G>A		p.X203_splice	ENST00000267163	NM_000321.2	203																																																																															
DIS3	22894	MSKCC	GRCh37	13	73343020	73343020	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000587-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			628	174	268	0	ENST00000377767.4:c.1786A>G	p.Arg596Gly	p.R596G	ENST00000377767	NM_014953.3	596	Aga/Gga																																																																														
RB1	5925	MSKCC	GRCh37	13	48934152	48934152	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0000587-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	170	234	0	ENST00000267163.4:c.610delG		p.X204_splice	ENST00000267163	NM_000321.2	204																																																																															
SPEN	23013	MSKCC	GRCh37	1	16259588	16259588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	96	207	0	ENST00000375759.3:c.6853C>T	p.Pro2285Ser	p.P2285S	ENST00000375759	NM_015001.2	2285	Cca/Tca																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165637	118165638	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	160	252	0	ENST00000369448.3:c.147_148delGGinsAA	p.Asp50Asn	p.D50N	ENST00000369448	NM_017709.3	49	aaGGac/aaAAac																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206650148	206650148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	14	239	0	ENST00000367120.3:c.668C>T	p.Pro223Leu	p.P223L	ENST00000367120	NM_014002.3	223	cCc/cTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086142	16086142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	58	230	0	ENST00000281043.3:c.1318C>T	p.Leu440Phe	p.L440F	ENST00000281043	NM_005378.4	440	Ctt/Ttt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589913	212589913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	113	165	0	ENST00000342788.4:c.629G>A	p.Arg210Lys	p.R210K	ENST00000342788	NM_005235.2	210	aGg/aAg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440391	52440391	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	52	179	0	ENST00000460680.1:c.661G>A	p.Glu221Lys	p.E221K	ENST00000460680	NM_004656.3	221	Gag/Aag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588887	52588887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	75	144	0	ENST00000394830.3:c.4141G>A	p.Gly1381Ser	p.G1381S	ENST00000394830	NM_018313.4	1381	Ggt/Agt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71037146	71037146	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	114	207	0	ENST00000318789.4:c.1145C>T	p.Pro382Leu	p.P382L	ENST00000318789	NM_032682.5	382	cCc/cTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156690	55156690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	38	145	0	ENST00000257290.5:c.3091G>A	p.Glu1031Lys	p.E1031K	ENST00000257290	NM_006206.4	1031	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55955617	55955617	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			788	71	447	0	ENST00000263923.4:c.3328A>T	p.Lys1110Ter	p.K1110*	ENST00000263923	NM_002253.2	1110	Aag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			58	11	151	0				ENST00000310581	NM_198253.2																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149500876	149500876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	16	242	0	ENST00000261799.4:c.2354G>A	p.Arg785Lys	p.R785K	ENST00000261799	NM_002609.3	785	aGg/aAg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524625	176524625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			260	36	461	0	ENST00000292408.4:c.2357C>T	p.Pro786Leu	p.P786L	ENST00000292408	NM_213647.1	786	cCc/cTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631175	176631175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			586	53	305	0	ENST00000439151.2:c.1118C>T	p.Ser373Phe	p.S373F	ENST00000439151	NM_022455.4	373	tCt/tTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681160	117681160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			556	155	266	0	ENST00000368508.3:c.3460C>T	p.Pro1154Ser	p.P1154S	ENST00000368508	NM_002944.2	1154	Cct/Tct																																																																														
PARK2	5071	MSKCC	GRCh37	6	161807833	161807833	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	138	379	0	ENST00000366898.1:c.1160C>G	p.Thr387Ser	p.T387S	ENST00000366898	NM_004562.2	387	aCt/aGt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2966373	2966373	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	82	296	0	ENST00000396946.4:c.1807G>A	p.Asp603Asn	p.D603N	ENST00000396946	NM_032415.4	603	Gat/Aat																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			811	219	386	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431659	6431659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	103	206	0	ENST00000356142.4:c.212C>T	p.Ser71Phe	p.S71F	ENST00000356142	NM_018890.3	71	tCc/tTc																																																																														
MET	4233	MSKCC	GRCh37	7	116418947	116418947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	262	293	0	ENST00000397752.3:c.3458C>T	p.Pro1153Leu	p.P1153L	ENST00000397752	NM_000245.2	1153	cCg/cTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080630	5080630	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			933	187	348	2	ENST00000381652.3:c.2381T>G	p.Phe794Cys	p.F794C	ENST00000381652	NM_004972.3	794	tTc/tGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	17	77	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	17	77	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
ATM	472	MSKCC	GRCh37	11	108151820	108151820	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			798	45	310	0	ENST00000278616.4:c.3501C>G	p.Ile1167Met	p.I1167M	ENST00000278616	NM_000051.3	1167	atC/atG																																																																														
CBL	867	MSKCC	GRCh37	11	119149229	119149230	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			696	192	373	0	ENST00000264033.4:c.1237_1238delGGinsAA	p.Gly413Asn	p.G413N	ENST00000264033	NM_005188.3	413	GGt/AAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431198	49431198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	15	323	0	ENST00000301067.7:c.9941C>T	p.Ser3314Phe	p.S3314F	ENST00000301067	NM_003482.3	3314	tCc/tTc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21619894	21619894	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55842804		P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	50	358	0	ENST00000382592.4:c.272C>T	p.Ser91Leu	p.S91L	ENST00000382592	NM_014572.2	91	tCg/tTg																																																																														
RAD51	5888	MSKCC	GRCh37	15	40998441	40998441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			851	231	472	0	ENST00000267868.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000267868	NM_002875.4	98	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3790547	3790547	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	60	252	0	ENST00000262367.5:c.3986T>G	p.Leu1329Arg	p.L1329R	ENST00000262367	NM_004380.2	1329	cTg/cGg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858517	9858517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	144	392	0	ENST00000330684.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000330684	NM_001134407.1	962	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274115	10274115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	62	324	0	ENST00000330684.3:c.154C>T	p.Arg52Ter	p.R52*	ENST00000330684	NM_001134407.1	52	Cga/Tga																																																																														
FANCA	2175	MSKCC	GRCh37	16	89831348	89831348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	95	334	0	ENST00000389301.3:c.2728C>T	p.Leu910Phe	p.L910F	ENST00000389301	NM_000135.2	910	Ctc/Ttc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877197	89877197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138744489		P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	108	237	0	ENST00000389301.3:c.440C>T	p.Ser147Phe	p.S147F	ENST00000389301	NM_000135.2	147	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	64	305	2	ENST00000269305.4:c.993+2T>G		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	26	211	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
NF1	4763	MSKCC	GRCh37	17	29559090	29559090	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			42	42	19	0	ENST00000358273.4:c.3198-1G>A		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																															
RARA	5914	MSKCC	GRCh37	17	38508318	38508321	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTAC	CTAC	TTA			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	123	353	0	ENST00000254066.5:c.626_629delCTACinsTTA	p.Thr209IlefsTer61	p.T209Ifs*61	ENST00000254066	NM_000964.3	209	aCTACg/aTTAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419926	41419926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	196	403	0	ENST00000373198.4:c.395G>A	p.Gly132Glu	p.G132E	ENST00000373198	NM_133170.3	132	gGg/gAg																																																																														
XIAP	331	MSKCC	GRCh37	X	123025123	123025123	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	146	212	0	ENST00000355640.3:c.1013A>T	p.Tyr338Phe	p.Y338F	ENST00000355640		338	tAt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	74	146	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			882	241	626	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	192	273	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	192	273	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	192	273	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851351	156851351	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			998	128	437	0	ENST00000524377.1:c.2308C>T	p.Gln770Ter	p.Q770*	ENST00000524377	NM_002529.3	770	Caa/Taa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641775	12641775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	118	319	0	ENST00000251849.4:c.866C>T	p.Ser289Leu	p.S289L	ENST00000251849	NM_002880.3	289	tCa/tTa																																																																														
ATR	545	MSKCC	GRCh37	3	142255044	142255044	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	79	305	0	ENST00000350721.4:c.3726-1G>T		p.X1242_splice	ENST00000350721	NM_001184.3	1242																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66218789	66218789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	136	523	0	ENST00000273854.3:c.2269G>A	p.Glu757Lys	p.E757K	ENST00000273854	NM_004439.5	757	Gag/Aag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35875642	35875642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			568	200	414	0	ENST00000303115.3:c.829C>T	p.Pro277Ser	p.P277S	ENST00000303115	NM_002185.3	277	Ccc/Tcc																																																																														
IRF4	3662	MSKCC	GRCh37	6	395007	395007	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	91	164	0	ENST00000380956.4:c.403G>C	p.Gly135Arg	p.G135R	ENST00000380956	NM_001195286.1	135	Gga/Cga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129216	152129216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1227	165	816	0	ENST00000206249.3:c.169G>T	p.Gly57Cys	p.G57C	ENST00000206249	NM_000125.3	57	Ggc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486135	8486135	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			759	277	580	2	ENST00000356435.5:c.2682G>C	p.Arg894Ser	p.R894S	ENST00000356435		894	agG/agC																																																																														
ETV6	2120	MSKCC	GRCh37	12	12006459	12006459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			967	211	553	0	ENST00000396373.4:c.427C>G	p.Gln143Glu	p.Q143E	ENST00000396373	NM_001987.4	143	Cag/Gag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918694	32918694	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	97	390	0	ENST00000380152.3:c.6842-1G>T		p.X2281_splice	ENST00000380152		2281																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609877	81609877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			808	230	381	0	ENST00000298171.2:c.1475C>A	p.Pro492His	p.P492H	ENST00000298171	NM_000369.2	492	cCt/cAt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610118	10610118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			770	250	477	0	ENST00000171111.5:c.592G>T	p.Glu198Ter	p.E198*	ENST00000171111	NM_203500.1	198	Gag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276269	15276269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			875	92	408	0	ENST00000263388.2:c.5725G>T	p.Ala1909Ser	p.A1909S	ENST00000263388	NM_000435.2	1909	Gca/Tca																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376260	15376260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	58	210	0	ENST00000263377.2:c.754C>T	p.Pro252Ser	p.P252S	ENST00000263377	NM_058243.2	252	Cca/Tca																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867276	45867276	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			655	42	216	0	ENST00000391945.4:c.917C>G	p.Ala306Gly	p.A306G	ENST00000391945	NM_000400.3	306	gCc/gGc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561430	9561430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			859	111	385	0	ENST00000353224.5:c.352G>T	p.Gly118Cys	p.G118C	ENST00000353224	NM_177990.2	118	Ggc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100966	41100966	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			946	171	351	0	ENST00000373198.4:c.1390delC	p.Leu464CysfsTer27	p.L464Cfs*27	ENST00000373198	NM_133170.3	464	Ctg/tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000621-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	138	474	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000621-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	58	120	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000621-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	58	120	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000621-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	58	120	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258779	115258779	+	start_lost	Translation_Start_Site	SNP	C	C	G			P-0000621-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			630	36	303	0	ENST00000369535.4:c.3G>C	p.Met1?	p.M1?	ENST00000369535	NM_002524.4	1	atG/atC																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	462	193	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	252	174	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	130	69	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11210250	11210250	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	169	199	0	ENST00000361445.4:c.4503G>A	p.Trp1501Ter	p.W1501*	ENST00000361445	NM_004958.3	1501	tgG/tgA																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458573	120458573	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	142	153	0	ENST00000256646.2:c.6772G>T	p.Glu2258Ter	p.E2258*	ENST00000256646	NM_024408.3	2258	Gag/Tag																																																																														
AKT3	10000	MSKCC	GRCh37	1	243809239	243809239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			807	669	439	0	ENST00000263826.5:c.385G>T	p.Gly129Ter	p.G129*	ENST00000263826	NM_005465.4	129	Gga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251842	212251842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	180	110	0	ENST00000342788.4:c.3217G>T	p.Ala1073Ser	p.A1073S	ENST00000342788	NM_005235.2	1073	Gct/Tct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537899	212537899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	323	140	0	ENST00000342788.4:c.1706G>T	p.Cys569Phe	p.C569F	ENST00000342788	NM_005235.2	569	tGc/tTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597406	52597406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	610	424	0	ENST00000394830.3:c.3904G>A	p.Glu1302Lys	p.E1302K	ENST00000394830	NM_018313.4	1302	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643510	52643510	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	446	202	0	ENST00000394830.3:c.2386G>T	p.Glu796Ter	p.E796*	ENST00000394830	NM_018313.4	796	Gag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55130050	55130050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	207	320	0	ENST00000257290.5:c.584G>T	p.Gly195Val	p.G195V	ENST00000257290	NM_006206.4	195	gGa/gTa																																																																														
SDHA	6389	MSKCC	GRCh37	5	218480	218480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	48	18	0	ENST00000264932.6:c.10G>T	p.Val4Phe	p.V4F	ENST00000264932	NM_004168.2	4	Gtc/Ttc																																																																														
SDHA	6389	MSKCC	GRCh37	5	235272	235272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	88	97	0	ENST00000264932.6:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000264932	NM_004168.2	360	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112179761	112179761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	95	106	0	ENST00000257430.4:c.8470G>C	p.Glu2824Gln	p.E2824Q	ENST00000257430	NM_000038.5	2824	Gaa/Caa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508496	106508496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	32	69	0	ENST00000359195.3:c.490G>A	p.Asp164Asn	p.D164N	ENST00000359195	NM_002649.2	164	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971159	21971159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	46	39	0	ENST00000304494.5:c.199G>T	p.Gly67Cys	p.G67C	ENST00000304494	NM_000077.4	67	Ggc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971159	21971159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	46	39	0	ENST00000304494.5:c.199G>T	p.Gly67Cys	p.G67C	ENST00000304494	NM_000077.4	67	Ggc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971159	21971159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	46	39	0	ENST00000304494.5:c.199G>T	p.Gly67Cys	p.G67C	ENST00000304494	NM_000077.4	67	Ggc/Tgc																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923427	36923427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	296	190	0	ENST00000358127.4:c.835G>T	p.Ala279Ser	p.A279S	ENST00000358127	NM_001280556.1	279	Gcc/Tcc																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015041	37015041	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	161	241	0	ENST00000358127.4:c.363G>C	p.Glu121Asp	p.E121D	ENST00000358127	NM_001280556.1	121	gaG/gaC																																																																														
RAD52	5893	MSKCC	GRCh37	12	1040418	1040418	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	399	315	0	ENST00000358495.3:c.154A>T	p.Ile52Leu	p.I52L	ENST00000358495	NM_134424.2	52	Ata/Tta																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435312	49435312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	125	176	0	ENST00000301067.7:c.6241G>A	p.Glu2081Lys	p.E2081K	ENST00000301067	NM_003482.3	2081	Gag/Aag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112123	115112123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	157	268	0	ENST00000257566.3:c.1617G>T	p.Met539Ile	p.M539I	ENST00000257566	NM_016569.3	539	atG/atT																																																																														
POLE	5426	MSKCC	GRCh37	12	133209090	133209090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	112	140	0	ENST00000320574.5:c.6141G>C	p.Met2047Ile	p.M2047I	ENST00000320574	NM_006231.2	2047	atG/atC																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906850	32906850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	357	221	0	ENST00000380152.3:c.1235C>T	p.Pro412Leu	p.P412L	ENST00000380152		412	cCc/cTc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349484	73349484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	193	187	0	ENST00000377767.4:c.852C>G	p.Asn284Lys	p.N284K	ENST00000377767	NM_014953.3	284	aaC/aaG																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3790400	3790400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	124	168	0	ENST00000262367.5:c.4133G>T	p.Arg1378Leu	p.R1378L	ENST00000262367	NM_004380.2	1378	cGg/cTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29679408	29679408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			859	242	263	0	ENST00000358273.4:c.7591C>G	p.Gln2531Glu	p.Q2531E	ENST00000358273	NM_001042492.2	2531	Cag/Gag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243626	41243626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			852	234	355	0	ENST00000357654.3:c.3922G>T	p.Ala1308Ser	p.A1308S	ENST00000357654	NM_007294.3	1308	Gca/Tca																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5207955	5207955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	744	393	0	ENST00000357368.4:c.5756G>A	p.Arg1919Gln	p.R1919Q	ENST00000357368	NM_002850.3	1919	cGg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11106898	11106898	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	430	211	0	ENST00000344626.4:c.1603G>T	p.Glu535Ter	p.E535*	ENST00000344626	NM_003072.3	535	Gag/Tag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867544	45867544	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	534	238	0	ENST00000391945.4:c.764C>G	p.Thr255Ser	p.T255S	ENST00000391945	NM_000400.3	255	aCc/aGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714400	40714400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			709	137	153	0	ENST00000373198.4:c.3997C>A	p.His1333Asn	p.H1333N	ENST00000373198	NM_133170.3	1333	Cac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929446	44929446	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	245	334	0	ENST00000377967.4:c.2546G>T	p.Ser849Ile	p.S849I	ENST00000377967	NM_021140.2	849	aGt/aTt																																																																														
AR	367	MSKCC	GRCh37	X	66766250	66766250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	115	169	0	ENST00000374690.3:c.1262G>T	p.Gly421Val	p.G421V	ENST00000374690	NM_000044.3	421	gGa/gTa																																																																														
MED12	9968	MSKCC	GRCh37	X	70351422	70351422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			666	195	390	0	ENST00000374080.3:c.4070G>T	p.Arg1357Leu	p.R1357L	ENST00000374080		1357	cGc/cTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092740	27092740	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	183	219	1	ENST00000324856.7:c.2765delG	p.Gly922AlafsTer2	p.G922Afs*2	ENST00000324856	NM_006015.4	921	Ggg/gg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004750	150004761	+	inframe_deletion	In_Frame_Del	DEL	GCTGGTGTAATT	GCTGGTGTAATT	-			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	74	170	0	ENST00000253339.5:c.1464_1475delAATTACACCAGC	p.Ile489_Ala492del	p.I489_A492del	ENST00000253339		488	gcAATTACACCAGCt/gct																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347830	347830	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	245	417	0	ENST00000262320.3:c.1676delA	p.Gln559ArgfsTer146	p.Q559Rfs*146	ENST00000262320	NM_003502.3	559	cAg/cg																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961575	54961580	+	inframe_deletion	In_Frame_Del	DEL	AACTGG	AACTGG	-			P-0000671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	70	96	0	ENST00000312783.6:c.52_57delCCAGTT	p.Pro18_Val19del	p.P18_V19del	ENST00000312783	NM_198436.1	18	CCAGTT/-																																																																														
MTOR	2475	MSKCC	GRCh37	1	11186751	11186751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	345	228	0	ENST00000361445.4:c.6454C>T	p.Arg2152Cys	p.R2152C	ENST00000361445	NM_004958.3	2152	Cgc/Tgc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	490	295	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			57	66	170	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	484	470	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950061	38950061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	93	239	0	ENST00000357387.3:c.3889C>T	p.Pro1297Ser	p.P1297S	ENST00000357387	NM_152756.3	1297	Cct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912874	32912874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	100	161	0	ENST00000380152.3:c.4382C>T	p.Ser1461Phe	p.S1461F	ENST00000380152		1461	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944607	40944607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	86	125	0	ENST00000373198.4:c.1895G>A	p.Arg632Gln	p.R632Q	ENST00000373198	NM_133170.3	632	cGa/cAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11206809	11206809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	108	253	0	ENST00000361445.4:c.4610C>T	p.Pro1537Leu	p.P1537L	ENST00000361445	NM_004958.3	1537	cCt/cTt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11264678	11264678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	73	203	0	ENST00000361445.4:c.3884C>T	p.Ser1295Leu	p.S1295L	ENST00000361445	NM_004958.3	1295	tCa/tTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023652	27023652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			612	145	262	0	ENST00000324856.7:c.758C>T	p.Pro253Leu	p.P253L	ENST00000324856	NM_006015.4	253	cCc/cTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057772	27057772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			812	334	428	0	ENST00000324856.7:c.1480C>T	p.Pro494Ser	p.P494S	ENST00000324856	NM_006015.4	494	Cct/Tct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092806	27092806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			586	133	283	2	ENST00000324856.7:c.2827C>T	p.Pro943Ser	p.P943S	ENST00000324856	NM_006015.4	943	Cct/Tct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100091	27100091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	372	325	1	ENST00000324856.7:c.3887C>T	p.Pro1296Leu	p.P1296L	ENST00000324856	NM_006015.4	1296	cCt/cTt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430641	78430641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1344	177	309	0	ENST00000370768.2:c.649G>A	p.Val217Ile	p.V217I	ENST00000370768	NM_003902.3	217	Gtt/Att																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166499	118166499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			96	107	211	0	ENST00000369448.3:c.1009G>A	p.Ala337Thr	p.A337T	ENST00000369448	NM_017709.3	337	Gcc/Acc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120469180	120469180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	131	281	0	ENST00000256646.2:c.3947G>C	p.Gly1316Ala	p.G1316A	ENST00000256646	NM_024408.3	1316	gGa/gCa																																																																														
INSRR	3645	MSKCC	GRCh37	1	156811906	156811906	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	152	359	0	ENST00000368195.3:c.3395G>A	p.Gly1132Glu	p.G1132E	ENST00000368195	NM_014215.2	1132	gGg/gAg																																																																														
PARP1	142	MSKCC	GRCh37	1	226551660	226551660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	163	269	0	ENST00000366794.5:c.2770G>A	p.Val924Ile	p.V924I	ENST00000366794	NM_001618.3	924	Gtt/Att																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086010	16086010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	132	224	0	ENST00000281043.3:c.1186G>A	p.Asp396Asn	p.D396N	ENST00000281043	NM_005378.4	396	Gac/Aac																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086053	16086053	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	79	248	0	ENST00000281043.3:c.1229A>T	p.Glu410Val	p.E410V	ENST00000281043	NM_005378.4	410	gAg/gTg																																																																														
ALK	238	MSKCC	GRCh37	2	29519902	29519902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	134	299	0	ENST00000389048.3:c.1669C>T	p.Arg557Cys	p.R557C	ENST00000389048	NM_004304.4	557	Cgt/Tgt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47635570	47635570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	75	165	1	ENST00000233146.2:c.242G>A	p.Ser81Asn	p.S81N	ENST00000233146	NM_000251.2	81	aGt/aAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018151	48018151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	250	253	0	ENST00000234420.5:c.346G>A	p.Asp116Asn	p.D116N	ENST00000234420	NM_000179.2	116	Gat/Aat																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028262	48028262	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	98	187	0	ENST00000234420.5:c.3140G>A	p.Trp1047Ter	p.W1047*	ENST00000234420	NM_000179.2	1047	tGg/tAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48032756	48032756	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	85	233	0	ENST00000234420.5:c.3557-1G>A		p.X1186_splice	ENST00000234420	NM_000179.2	1186																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212522500	212522500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			147	137	134	0	ENST00000342788.4:c.1925C>T	p.Ser642Phe	p.S642F	ENST00000342788	NM_005235.2	642	tCc/tTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275359	41275359	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	49	127	0	ENST00000349496.5:c.1524+1G>A		p.X508_splice	ENST00000349496	NM_001904.3	508																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71161719	71161719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	559	292	0	ENST00000318789.4:c.250C>T	p.Pro84Ser	p.P84S	ENST00000318789	NM_032682.5	84	Ccc/Tcc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468436	89468436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	99	176	0	ENST00000336596.2:c.1970T>C	p.Val657Ala	p.V657A	ENST00000336596	NM_005233.5	657	gTt/gCt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521763	89521763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	76	136	0	ENST00000336596.2:c.2840C>T	p.Ser947Phe	p.S947F	ENST00000336596	NM_005233.5	947	tCc/tTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911454	134911454	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	97	155	0	ENST00000398015.3:c.1919T>A	p.Leu640Gln	p.L640Q	ENST00000398015	NM_004441.4	640	cTg/cAg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181390	185181390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	258	240	0	ENST00000265026.3:c.1331G>A	p.Gly444Glu	p.G444E	ENST00000265026	NM_004721.4	444	gGa/gAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189455644	189455644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	78	171	0	ENST00000264731.3:c.178G>A	p.Asp60Asn	p.D60N	ENST00000264731	NM_003722.4	60	Gat/Aat																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803570	1803570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			161	195	195	0	ENST00000260795.2:c.748C>T	p.Pro250Ser	p.P250S	ENST00000260795		250	Ccg/Tcg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806207	1806207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	316	417	1	ENST00000260795.2:c.1226C>T	p.Pro409Leu	p.P409L	ENST00000260795		409	cCc/cTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955949	55955949	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	222	287	0	ENST00000263923.4:c.3213G>A	p.Trp1071Ter	p.W1071*	ENST00000263923	NM_002253.2	1071	tgG/tgA																																																																														
KDR	3791	MSKCC	GRCh37	4	55973911	55973911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	61	138	0	ENST00000263923.4:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000263923	NM_002253.2	469	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55980300	55980300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	207	263	0	ENST00000263923.4:c.791C>T	p.Ser264Phe	p.S264F	ENST00000263923	NM_002253.2	264	tCt/tTt																																																																														
TET2	54790	MSKCC	GRCh37	4	106196537	106196537	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	316	272	0	ENST00000380013.4:c.4870C>T	p.Gln1624Ter	p.Q1624*	ENST00000380013	NM_001127208.2	1624	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510207	187510207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	186	253	0	ENST00000441802.2:c.13306C>T	p.Pro4436Ser	p.P4436S	ENST00000441802	NM_005245.3	4436	Cct/Tct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524119	187524119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	113	210	0	ENST00000441802.2:c.11420C>T	p.Ser3807Phe	p.S3807F	ENST00000441802	NM_005245.3	3807	tCt/tTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530363	187530363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	119	280	0	ENST00000441802.2:c.10180G>A	p.Val3394Met	p.V3394M	ENST00000441802	NM_005245.3	3394	Gtg/Atg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532639	187532639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	89	205	0	ENST00000441802.2:c.9754G>A	p.Val3252Met	p.V3252M	ENST00000441802	NM_005245.3	3252	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1294163	1294163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199701877		P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			149	141	294	0	ENST00000310581.5:c.838G>A	p.Glu280Lys	p.E280K	ENST00000310581	NM_198253.2	280	Gaa/Aaa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945092	38945092	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769767383		P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	499	240	0	ENST00000357387.3:c.4712C>T	p.Ser1571Leu	p.S1571L	ENST00000357387	NM_152756.3	1571	tCg/tTg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160597	56160597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	314	175	0	ENST00000399503.3:c.871C>T	p.Pro291Ser	p.P291S	ENST00000399503	NM_005921.1	291	Cct/Tct																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589168	67589168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			784	145	296	0	ENST00000274335.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000274335		386	Cga/Tga																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441110	149441110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			674	303	472	1	ENST00000286301.3:c.1802C>T	p.Ala601Val	p.A601V	ENST00000286301	NM_005211.3	601	gCc/gTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149456854	149456854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	147	287	0	ENST00000286301.3:c.874T>C	p.Phe292Leu	p.F292L	ENST00000286301	NM_005211.3	292	Ttc/Ctc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495486	149495486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	250	344	0	ENST00000261799.4:c.3161C>T	p.Thr1054Ile	p.T1054I	ENST00000261799	NM_002609.3	1054	aCc/aTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149501449	149501449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	289	223	0	ENST00000261799.4:c.2338C>T	p.Pro780Ser	p.P780S	ENST00000261799	NM_002609.3	780	Ccc/Tcc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149501461	149501461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	153	247	0	ENST00000261799.4:c.2326G>A	p.Asp776Asn	p.D776N	ENST00000261799	NM_002609.3	776	Gat/Aat																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149501516	149501516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	322	254	0	ENST00000261799.4:c.2271G>A	p.Met757Ile	p.M757I	ENST00000261799	NM_002609.3	757	atG/atA																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149510160	149510160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	90	175	0	ENST00000261799.4:c.1309C>T	p.Arg437Cys	p.R437C	ENST00000261799	NM_002609.3	437	Cgt/Tgt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176671198	176671198	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	98	280	0	ENST00000439151.2:c.4305C>A	p.Cys1435Ter	p.C1435*	ENST00000439151	NM_022455.4	1435	tgC/tgA																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721157	176721157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	170	153	0	ENST00000439151.2:c.6788C>T	p.Ser2263Leu	p.S2263L	ENST00000439151	NM_022455.4	2263	tCg/tTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057038	180057038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	95	272	0	ENST00000261937.6:c.581C>T	p.Ser194Phe	p.S194F	ENST00000261937	NM_182925.4	194	tCc/tTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679726	30679726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			890	183	361	0	ENST00000376406.3:c.1993G>A	p.Gly665Arg	p.G665R	ENST00000376406	NM_014641.2	665	Gga/Aga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166333	32166333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			641	120	240	0	ENST00000375023.3:c.4621G>A	p.Glu1541Lys	p.E1541K	ENST00000375023	NM_004557.3	1541	Gaa/Aaa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170021	32170021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			614	300	430	1	ENST00000375023.3:c.3587G>A	p.Gly1196Glu	p.G1196E	ENST00000375023	NM_004557.3	1196	gGa/gAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187392	32187392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	51	155	0	ENST00000375023.3:c.1487C>T	p.Thr496Ile	p.T496I	ENST00000375023	NM_004557.3	496	aCc/aTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32189048	32189048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	95	253	0	ENST00000375023.3:c.506G>A	p.Gly169Glu	p.G169E	ENST00000375023	NM_004557.3	169	gGg/gAg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287242	33287242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			573	251	221	0	ENST00000374542.5:c.1855C>T	p.Pro619Ser	p.P619S	ENST00000374542	NM_001141970.1	619	Cct/Tct																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790813	89790813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			617	212	444	0	ENST00000336032.3:c.200G>A	p.Cys67Tyr	p.C67Y	ENST00000336032	NM_006813.2	67	tGt/tAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641051	117641051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	550	350	0	ENST00000368508.3:c.5920G>A	p.Glu1974Lys	p.E1974K	ENST00000368508	NM_002944.2	1974	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662434	117662434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	497	281	0	ENST00000368508.3:c.4943G>A	p.Ser1648Asn	p.S1648N	ENST00000368508	NM_002944.2	1648	aGt/aAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724410	117724410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			65	279	177	0	ENST00000368508.3:c.469C>T	p.Pro157Ser	p.P157S	ENST00000368508	NM_002944.2	157	Ccc/Tcc																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997796	149997796	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	57	211	0	ENST00000253339.5:c.2671C>G	p.Leu891Val	p.L891V	ENST00000253339		891	Ctg/Gtg																																																																														
PARK2	5071	MSKCC	GRCh37	6	162622240	162622240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	234	268	0	ENST00000366898.1:c.457C>T	p.Pro153Ser	p.P153S	ENST00000366898	NM_004562.2	153	Ccc/Tcc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963951	2963951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	329	335	0	ENST00000396946.4:c.1856C>T	p.Ser619Phe	p.S619F	ENST00000396946	NM_032415.4	619	tCc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55238896	55238896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	252	169	0	ENST00000275493.2:c.1909C>T	p.Pro637Ser	p.P637S	ENST00000275493	NM_005228.3	637	Cca/Tca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268989	55268989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	85	248	0	ENST00000275493.2:c.3055C>T	p.Pro1019Ser	p.P1019S	ENST00000275493	NM_005228.3	1019	Cca/Tca																																																																														
HGF	3082	MSKCC	GRCh37	7	81359066	81359066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	556	302	1	ENST00000222390.5:c.895C>T	p.Pro299Ser	p.P299S	ENST00000222390	NM_000601.4	299	Cct/Tct																																																																														
SMO	6608	MSKCC	GRCh37	7	128829258	128829258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	50	213	0	ENST00000249373.3:c.266C>T	p.Ser89Phe	p.S89F	ENST00000249373	NM_005631.4	89	tCc/tTc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148513845	148513845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	113	270	0	ENST00000320356.2:c.1436C>T	p.Ser479Phe	p.S479F	ENST00000320356	NM_004456.4	479	tCt/tTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845246	151845246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	70	155	0	ENST00000262189.6:c.13766C>T	p.Thr4589Ile	p.T4589I	ENST00000262189	NM_170606.2	4589	aCt/aTt																																																																														
NBN	4683	MSKCC	GRCh37	8	90983483	90983483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	134	221	0	ENST00000265433.3:c.620G>A	p.Ser207Asn	p.S207N	ENST00000265433	NM_002485.4	207	aGt/aAt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737576	145737576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	126	271	0	ENST00000428558.2:c.3187G>A	p.Glu1063Lys	p.E1063K	ENST00000428558	NM_004260.3	1063	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8436600	8436600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs888423638		P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	150	278	0	ENST00000356435.5:c.4078G>A	p.Glu1360Lys	p.E1360K	ENST00000356435		1360	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486052	8486052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	240	364	0	ENST00000356435.5:c.2765C>T	p.Pro922Leu	p.P922L	ENST00000356435		922	cCt/cTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	193	171	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	193	171	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87356813	87356813	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs199505477		P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	771	418	0	ENST00000277120.3:c.1166A>G	p.Asn389Ser	p.N389S	ENST00000277120		389	aAc/aGc																																																																														
SYK	6850	MSKCC	GRCh37	9	93650881	93650881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200438123		P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			42	43	119	0	ENST00000375746.1:c.1807G>A	p.Asp603Asn	p.D603N	ENST00000375746	NM_001174167.1	603	Gat/Aat																																																																														
ABL1	25	MSKCC	GRCh37	9	133729515	133729515	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	803	376	0	ENST00000318560.5:c.144G>A	p.Trp48Ter	p.W48*	ENST00000318560	NM_005157.4	48	tgG/tgA																																																																														
ABL1	25	MSKCC	GRCh37	9	133747593	133747593	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	54	188	0	ENST00000318560.5:c.900G>C	p.Gln300His	p.Q300H	ENST00000318560	NM_005157.4	300	caG/caC																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787827	135787827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	83	188	0	ENST00000298552.3:c.755C>T	p.Thr252Ile	p.T252I	ENST00000298552	NM_001162426.1	252	aCt/aTt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135801014	135801014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	457	213	2	ENST00000298552.3:c.323C>T	p.Ser108Phe	p.S108F	ENST00000298552	NM_001162426.1	108	tCt/tTt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390557	139390557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1059	175	507	0	ENST00000277541.6:c.7634C>T	p.Ser2545Phe	p.S2545F	ENST00000277541	NM_017617.3	2545	tCc/tTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653790	89653790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	219	192	0	ENST00000371953.3:c.88C>T	p.Pro30Ser	p.P30S	ENST00000371953	NM_000314.4	30	Cca/Tca																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123260418	123260418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	90	297	0	ENST00000358487.5:c.1483G>A	p.Val495Met	p.V495M	ENST00000358487	NM_000141.4	495	Gtg/Atg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310896	123310896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	187	332	0	ENST00000358487.5:c.532C>T	p.Arg178Cys	p.R178C	ENST00000358487	NM_000141.4	178	Cgc/Tgc																																																																														
WT1	7490	MSKCC	GRCh37	11	32410671	32410671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	393	339	0	ENST00000332351.3:c.1487C>T	p.Ser496Leu	p.S496L	ENST00000332351	NM_024426.4	496	tCa/tTa																																																																														
WT1	7490	MSKCC	GRCh37	11	32439138	32439138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	316	202	0	ENST00000332351.3:c.935G>A	p.Gly312Glu	p.G312E	ENST00000332351	NM_024426.4	312	gGa/gAa																																																																														
ATM	472	MSKCC	GRCh37	11	108204628	108204628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			137	224	139	0	ENST00000278616.4:c.7943C>T	p.Pro2648Leu	p.P2648L	ENST00000278616	NM_000051.3	2648	cCa/cTa																																																																														
ATM	472	MSKCC	GRCh37	11	108216545	108216545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	177	332	0	ENST00000278616.4:c.8494C>T	p.Arg2832Cys	p.R2832C	ENST00000278616	NM_000051.3	2832	Cgt/Tgt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374838	118374838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	76	154	0	ENST00000534358.1:c.8231C>T	p.Pro2744Leu	p.P2744L	ENST00000534358	NM_005933.3	2744	cCa/cTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376488	118376488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	371	302	0	ENST00000534358.1:c.9881C>T	p.Ser3294Phe	p.S3294F	ENST00000534358	NM_005933.3	3294	tCt/tTt																																																																														
CBL	867	MSKCC	GRCh37	11	119170450	119170450	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	302	234	2	ENST00000264033.4:c.2680G>T	p.Glu894Ter	p.E894*	ENST00000264033	NM_005188.3	894	Gaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641526	18641526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	232	227	0	ENST00000266497.5:c.2525G>A	p.Gly842Glu	p.G842E	ENST00000266497		842	gGg/gAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644490	18644490	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs181773550		P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	111	227	0	ENST00000266497.5:c.2668G>A	p.Asp890Asn	p.D890N	ENST00000266497		890	Gat/Aat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715752	18715752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	126	235	0	ENST00000266497.5:c.3583G>A	p.Glu1195Lys	p.E1195K	ENST00000266497		1195	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244227	46244227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	185	185	0	ENST00000334344.6:c.2321C>T	p.Pro774Leu	p.P774L	ENST00000334344	NM_152641.2	774	cCa/cTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245939	46245939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	109	188	0	ENST00000334344.6:c.4033G>A	p.Asp1345Asn	p.D1345N	ENST00000334344	NM_152641.2	1345	Gac/Aac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425562	49425562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			710	197	476	0	ENST00000301067.7:c.12926C>T	p.Pro4309Leu	p.P4309L	ENST00000301067	NM_003482.3	4309	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426484	49426484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			889	258	555	1	ENST00000301067.7:c.12004C>T	p.Pro4002Ser	p.P4002S	ENST00000301067	NM_003482.3	4002	Cca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431026	49431026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	108	281	0	ENST00000301067.7:c.10113G>T	p.Gln3371His	p.Q3371H	ENST00000301067	NM_003482.3	3371	caG/caT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435231	49435231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	190	221	1	ENST00000301067.7:c.6322C>T	p.Pro2108Ser	p.P2108S	ENST00000301067	NM_003482.3	2108	Ccg/Tcg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436961	49436961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	100	262	0	ENST00000301067.7:c.5542G>A	p.Asp1848Asn	p.D1848N	ENST00000301067	NM_003482.3	1848	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445664	49445664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	357	400	0	ENST00000301067.7:c.1802C>T	p.Pro601Leu	p.P601L	ENST00000301067	NM_003482.3	601	cCa/cTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445700	49445700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	402	463	0	ENST00000301067.7:c.1766C>T	p.Pro589Leu	p.P589L	ENST00000301067	NM_003482.3	589	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446157	49446157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	63	122	0	ENST00000301067.7:c.1309G>A	p.Glu437Lys	p.E437K	ENST00000301067	NM_003482.3	437	Gag/Aag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416788	121416788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	231	437	0	ENST00000257555.6:c.217G>A	p.Glu73Lys	p.E73K	ENST00000257555		73	Gag/Aag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21620063	21620063	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	138	412	0	ENST00000382592.4:c.103C>T	p.Gln35Ter	p.Q35*	ENST00000382592	NM_014572.2	35	Cag/Tag																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001305	29001305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	68	217	0	ENST00000282397.4:c.1427C>T	p.Ser476Phe	p.S476F	ENST00000282397	NM_002019.4	476	tCc/tTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32921026	32921026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	118	258	0	ENST00000380152.3:c.7000C>T	p.Pro2334Ser	p.P2334S	ENST00000380152		2334	Ccc/Tcc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32969009	32969009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	162	391	0	ENST00000380152.3:c.9440C>T	p.Ser3147Phe	p.S3147F	ENST00000380152		3147	tCt/tTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972596	32972596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	102	235	0	ENST00000380152.3:c.9946G>A	p.Glu3316Lys	p.E3316K	ENST00000380152		3316	Gaa/Aaa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346841	73346841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	123	206	0	ENST00000377767.4:c.1376T>C	p.Ile459Thr	p.I459T	ENST00000377767	NM_014953.3	459	aTt/aCt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435291	110435291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			40	25	44	0	ENST00000375856.3:c.3110C>T	p.Ala1037Val	p.A1037V	ENST00000375856	NM_003749.2	1037	gCc/gTc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610248	81610248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	60	218	0	ENST00000298171.2:c.1846G>A	p.Gly616Arg	p.G616R	ENST00000298171	NM_000369.2	616	Ggg/Agg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610608	81610608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	228	309	0	ENST00000298171.2:c.2206G>A	p.Glu736Lys	p.E736K	ENST00000298171	NM_000369.2	736	Gaa/Aaa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569702	95569702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	138	207	0	ENST00000343455.3:c.4031C>T	p.Ser1344Leu	p.S1344L	ENST00000343455	NM_177438.2	1344	tCa/tTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476243	88476243	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	142	231	0	ENST00000360948.2:c.1889G>A	p.Arg630Lys	p.R630K	ENST00000360948	NM_001012338.2	630	aGg/aAg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99491879	99491879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	215	349	1	ENST00000268035.6:c.3664C>T	p.Leu1222Phe	p.L1222F	ENST00000268035	NM_000875.3	1222	Ctt/Ttt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943819	9943819	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	86	108	0	ENST00000330684.3:c.1123-1G>A		p.X375_splice	ENST00000330684	NM_001134407.1	375																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7978952	7978952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139689690		P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	241	336	0	ENST00000319144.4:c.1615G>A	p.Glu539Lys	p.E539K	ENST00000319144	NM_001139.2	539	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29508803	29508803	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	89	221	0	ENST00000358273.4:c.730G>A	p.Glu244Lys	p.E244K	ENST00000358273	NM_001042492.2	244	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29654712	29654712	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	303	226	0	ENST00000358273.4:c.5464C>T	p.Gln1822Ter	p.Q1822*	ENST00000358273	NM_001042492.2	1822	Cag/Tag																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33427997	33427997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	129	365	0	ENST00000335858.7:c.626C>T	p.Ala209Val	p.A209V	ENST00000335858	NM_133629.2	209	gCc/gTc																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780590	56780590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			669	501	402	0	ENST00000337432.4:c.605A>T	p.Asp202Val	p.D202V	ENST00000337432	NM_058216.2	202	gAt/gTt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59793418	59793418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	456	357	0	ENST00000259008.2:c.2386C>A	p.Leu796Ile	p.L796I	ENST00000259008	NM_032043.2	796	Cta/Ata																																																																														
CD79B	974	MSKCC	GRCh37	17	62009619	62009619	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	315	359	0	ENST00000392795.3:c.3G>A	p.Met1?	p.M1?	ENST00000392795	NM_001039933.1	1	atG/atA																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117597	70117597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			813	123	332	1	ENST00000245479.2:c.65C>T	p.Pro22Leu	p.P22L	ENST00000245479	NM_000346.3	22	cCc/cTc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897297	78897297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	76	280	0	ENST00000306801.3:c.2632C>T	p.Pro878Ser	p.P878S	ENST00000306801	NM_020761.2	878	Cct/Tct																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2206752	2206752	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	95	305	0	ENST00000398665.3:c.812C>G	p.Pro271Arg	p.P271R	ENST00000398665	NM_032482.2	271	cCc/cGc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2227103	2227103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	24	63	0	ENST00000398665.3:c.4583G>A	p.Gly1528Glu	p.G1528E	ENST00000398665	NM_032482.2	1528	gGg/gAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5245913	5245913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	141	392	0	ENST00000357368.4:c.862G>A	p.Glu288Lys	p.E288K	ENST00000357368	NM_002850.3	288	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281491	15281491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	142	285	0	ENST00000263388.2:c.4882G>A	p.Asp1628Asn	p.D1628N	ENST00000263388	NM_000435.2	1628	Gac/Aac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296473	15296473	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	157	276	0	ENST00000263388.2:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000263388	NM_000435.2	657	Gag/Tag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355266	15355266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	46	46	0	ENST00000263377.2:c.2357C>T	p.Pro786Leu	p.P786L	ENST00000263377	NM_058243.2	786	cCg/cTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17937650	17937650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	87	259	0	ENST00000458235.1:c.3277C>T	p.Pro1093Ser	p.P1093S	ENST00000458235	NM_000215.3	1093	Ccc/Tcc																																																																														
AKT2	208	MSKCC	GRCh37	19	40741836	40741836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	540	330	2	ENST00000392038.2:c.1136C>T	p.Ser379Phe	p.S379F	ENST00000392038	NM_001626.4	379	tCc/tTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538374	9538374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	150	168	0	ENST00000353224.5:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000353224	NM_177990.2	542	Gaa/Aaa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546931	9546931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	108	155	0	ENST00000353224.5:c.1091C>T	p.Ser364Leu	p.S364L	ENST00000353224	NM_177990.2	364	tCg/tTg																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309465	30309465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			819	179	413	0	ENST00000307677.4:c.557G>A	p.Gly186Asp	p.G186D	ENST00000307677	NM_138578.1	186	gGc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730817	40730817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	108	206	0	ENST00000373198.4:c.3718C>T	p.Leu1240Phe	p.L1240F	ENST00000373198	NM_133170.3	1240	Ctt/Ttt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730818	40730818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	123	210	0	ENST00000373198.4:c.3717C>A	p.Phe1239Leu	p.F1239L	ENST00000373198	NM_133170.3	1239	ttC/ttA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40911144	40911144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	259	359	0	ENST00000373198.4:c.2161C>T	p.Arg721Cys	p.R721C	ENST00000373198	NM_133170.3	721	Cgt/Tgt																																																																														
ERG	2078	MSKCC	GRCh37	21	39755572	39755572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	217	280	0	ENST00000288319.7:c.1193C>T	p.Ala398Val	p.A398V	ENST00000288319	NM_182918.3	398	gCc/gTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39775563	39775563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	98	234	0	ENST00000288319.7:c.457C>T	p.Pro153Ser	p.P153S	ENST00000288319	NM_182918.3	153	Cca/Tca																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656818	45656818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	98	260	0	ENST00000407780.3:c.338G>A	p.Cys113Tyr	p.C113Y	ENST00000407780	NM_001283052.1	113	tGc/tAc																																																																														
NF2	4771	MSKCC	GRCh37	22	30064325	30064325	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	88	220	0	ENST00000338641.4:c.889C>G	p.Leu297Val	p.L297V	ENST00000338641	NM_000268.3	297	Ctc/Gtc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923720	39923720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	400	318	2	ENST00000378444.4:c.3371T>C	p.Met1124Thr	p.M1124T	ENST00000378444	NM_001123385.1	1124	aTg/aCg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44936022	44936022	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			144	556	359	0	ENST00000377967.4:c.2783A>G	p.Tyr928Cys	p.Y928C	ENST00000377967	NM_021140.2	928	tAc/tGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938405	44938405	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	353	180	0	ENST00000377967.4:c.2953T>A	p.Ser985Thr	p.S985T	ENST00000377967	NM_021140.2	985	Tct/Act																																																																														
AR	367	MSKCC	GRCh37	X	66766138	66766138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	218	145	0	ENST00000374690.3:c.1150C>T	p.His384Tyr	p.H384Y	ENST00000374690	NM_000044.3	384	Cac/Tac																																																																														
MED12	9968	MSKCC	GRCh37	X	70339298	70339298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	159	179	0	ENST00000374080.3:c.175G>A	p.Ala59Thr	p.A59T	ENST00000374080		59	Gcc/Acc																																																																														
MED12	9968	MSKCC	GRCh37	X	70344677	70344677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	222	240	0	ENST00000374080.3:c.2038G>A	p.Glu680Lys	p.E680K	ENST00000374080		680	Gag/Aag																																																																														
MED12	9968	MSKCC	GRCh37	X	70345525	70345525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	244	324	0	ENST00000374080.3:c.2384C>T	p.Pro795Leu	p.P795L	ENST00000374080		795	cCt/cTt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5050821	5050829	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AACTCTATC	AACTCTATC	-			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	113	163	0	ENST00000381652.3:c.605_613delACTCTATCA	p.Asn202_Ile204del	p.N202_I204del	ENST00000381652	NM_004972.3	202	AACTCTATC/-																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879009	151879010	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	234	183	0	ENST00000262189.6:c.5935_5936delCCinsAT	p.Pro1979Ile	p.P1979I	ENST00000262189	NM_170606.2	1979	CCc/ATc																																																																														
KDR	3791	MSKCC	GRCh37	4	55979539	55979540	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	128	365	0	ENST00000263923.4:c.907_908delGGinsAA	p.Gly303Lys	p.G303K	ENST00000263923	NM_002253.2	303	GGa/AAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47139545	47139546	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0000686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	600	388	0	ENST00000409792.3:c.5041_5042delGGinsAT	p.Gly1681Ile	p.G1681I	ENST00000409792	NM_014159.6	1681	GGa/ATa																																																																														
STK40	83931	MSKCC	GRCh37	1	36814315	36814316	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	47	459	0	ENST00000373129.3:c.724_725delCCinsTT	p.Pro242Phe	p.P242F	ENST00000373129	NM_032017.1	242	CCc/TTc																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695809	117695809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	50	263	0	ENST00000369458.3:c.628G>A	p.Val210Ile	p.V210I	ENST00000369458	NM_024626.3	210	Gtt/Att																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551682	150551682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	23	220	0	ENST00000369026.2:c.325G>A	p.Glu109Lys	p.E109K	ENST00000369026	NM_021960.4	109	Gag/Aag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844786	156844786	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	21	348	0	ENST00000524377.1:c.1340A>G	p.Lys447Arg	p.K447R	ENST00000524377	NM_002529.3	447	aAg/aGg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846310	156846310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	45	465	0	ENST00000524377.1:c.1751C>T	p.Pro584Leu	p.P584L	ENST00000524377	NM_002529.3	584	cCc/cTc																																																																														
PARP1	142	MSKCC	GRCh37	1	226578211	226578211	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147537486		P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	54	376	0	ENST00000366794.5:c.517C>T	p.Arg173Trp	p.R173W	ENST00000366794	NM_001618.3	173	Cgg/Tgg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26101081	26101087	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTCCC	TTTTCCC	AG			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	117	687	0	ENST00000435504.4:c.5_11delGGGAAAAinsCT	p.Arg2ThrfsTer4	p.R2Tfs*4	ENST00000435504		2	aGGGAAAAg/aCTg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027253	48027253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	74	268	0	ENST00000234420.5:c.2131C>T	p.Pro711Ser	p.P711S	ENST00000234420	NM_000179.2	711	Ccc/Tcc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027896	48027896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			556	64	349	0	ENST00000234420.5:c.2774G>A	p.Gly925Glu	p.G925E	ENST00000234420	NM_000179.2	925	gGa/gAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028131	48028131	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			537	187	427	0	ENST00000234420.5:c.3009T>A	p.Cys1003Ter	p.C1003*	ENST00000234420	NM_000179.2	1003	tgT/tgA																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033729	48033729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	56	305	0	ENST00000234420.5:c.3940C>T	p.Gln1314Ter	p.Q1314*	ENST00000234420	NM_000179.2	1314	Caa/Taa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096498	178096498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			780	103	359	0	ENST00000397062.3:c.833A>G	p.Asn278Ser	p.N278S	ENST00000397062	NM_006164.4	278	aAc/aGc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288978	212288979	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			682	78	542	0	ENST00000342788.4:c.2767_2768delGGinsAA	p.Gly923Lys	p.G923K	ENST00000342788	NM_005235.2	923	GGa/AAa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225365132	225365132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			886	115	353	0	ENST00000264414.4:c.1558C>T	p.Pro520Ser	p.P520S	ENST00000264414	NM_003590.4	520	Cca/Tca																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662526	227662526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	39	188	0	ENST00000305123.5:c.929C>T	p.Ala310Val	p.A310V	ENST00000305123	NM_005544.2	310	gCc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			744	64	339	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	48	601	0	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808367	1808367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	35	372	0	ENST00000260795.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000260795		709	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1293592	1293592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	20	320	0	ENST00000310581.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000310581	NM_198253.2	470	cGc/cAc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871292	35871292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	53	293	0	ENST00000303115.3:c.514G>A	p.Glu172Lys	p.E172K	ENST00000303115	NM_002185.3	172	Gaa/Aaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637573	176637573	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	66	312	0	ENST00000439151.2:c.2173A>C	p.Thr725Pro	p.T725P	ENST00000439151	NM_022455.4	725	Acg/Ccg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180039532	180039532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	43	448	0	ENST00000261937.6:c.3511G>A	p.Asp1171Asn	p.D1171N	ENST00000261937	NM_182925.4	1171	Gac/Aac																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048217	180048217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	17	273	0	ENST00000261937.6:c.2056G>A	p.Asp686Asn	p.D686N	ENST00000261937	NM_182925.4	686	Gac/Aac																																																																														
IRF4	3662	MSKCC	GRCh37	6	407570	407570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	91	362	0	ENST00000380956.4:c.1328C>T	p.Ser443Phe	p.S443F	ENST00000380956	NM_001195286.1	443	tCt/tTt																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481478	20481478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	98	347	0	ENST00000346618.3:c.547C>T	p.Leu183Phe	p.L183F	ENST00000346618	NM_001949.4	183	Ctt/Ttt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180653	32180653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	45	332	0	ENST00000375023.3:c.2474C>T	p.Pro825Leu	p.P825L	ENST00000375023	NM_004557.3	825	cCt/cTt																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790687	89790687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			781	118	878	0	ENST00000336032.3:c.74C>T	p.Ser25Phe	p.S25F	ENST00000336032	NM_006813.2	25	tCc/tTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555167	106555167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	45	179	0	ENST00000369096.4:c.2284G>A	p.Val762Met	p.V762M	ENST00000369096	NM_001198.3	762	Gtg/Atg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674249	117674249	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	94	513	0	ENST00000368508.3:c.4225C>T	p.Gln1409Ter	p.Q1409*	ENST00000368508	NM_002944.2	1409	Cag/Tag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005429	150005429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	93	425	0	ENST00000253339.5:c.796C>T	p.Pro266Ser	p.P266S	ENST00000253339		266	Cct/Tct																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023124	150023124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			713	81	574	0	ENST00000253339.5:c.139G>A	p.Ala47Thr	p.A47T	ENST00000253339		47	Gct/Act																																																																														
PARK2	5071	MSKCC	GRCh37	6	161969988	161969988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	104	657	0	ENST00000366898.1:c.981G>A	p.Met327Ile	p.M327I	ENST00000366898	NM_004562.2	327	atG/atA																																																																														
SMO	6608	MSKCC	GRCh37	7	128846164	128846164	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	79	616	0	ENST00000249373.3:c.1094G>A	p.Trp365Ter	p.W365*	ENST00000249373	NM_005631.4	365	tGg/tAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140439617	140439617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	95	382	0	ENST00000288602.6:c.2122C>T	p.Pro708Ser	p.P708S	ENST00000288602	NM_004333.4	708	Ccc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140500180	140500180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	119	269	0	ENST00000288602.6:c.962C>T	p.Pro321Leu	p.P321L	ENST00000288602	NM_004333.4	321	cCc/cTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012235	152012236	+	stop_gained	Nonsense_Mutation	DNP	CT	CT	TA			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	141	469	0	ENST00000262189.6:c.577_578delAGinsTA	p.Arg193Ter	p.R193*	ENST00000262189	NM_170606.2	193	AGa/TAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	49	179	2	ENST00000304494.5:c.244G>A	p.Val82Met	p.V82M	ENST00000304494	NM_000077.4	82	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	49	179	2	ENST00000304494.5:c.244G>A	p.Val82Met	p.V82M	ENST00000304494	NM_000077.4	82	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	49	179	2	ENST00000304494.5:c.244G>A	p.Val82Met	p.V82M	ENST00000304494	NM_000077.4	82	Gtg/Atg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399143	139399143	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	29	355	0	ENST00000277541.6:c.5000A>G	p.Asp1667Gly	p.D1667G	ENST00000277541	NM_017617.3	1667	gAc/gGc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412203	139412204	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	64	324	1	ENST00000277541.6:c.1441_1441+1delGGinsAA		p.X481_splice	ENST00000277541	NM_017617.3	481																																																																															
KDM5A	5927	MSKCC	GRCh37	12	416840	416840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			693	92	453	0	ENST00000399788.2:c.3710C>T	p.Pro1237Leu	p.P1237L	ENST00000399788	NM_001042603.1	1237	cCc/cTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46215212	46215212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	67	299	0	ENST00000334344.6:c.647C>T	p.Ser216Phe	p.S216F	ENST00000334344	NM_152641.2	216	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433394	49433394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	14	208	0	ENST00000301067.7:c.8053C>T	p.Arg2685Ter	p.R2685*	ENST00000301067	NM_003482.3	2685	Cga/Tga																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484046	50484046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	74	439	0	ENST00000394963.4:c.896C>T	p.Pro299Leu	p.P299L	ENST00000394963	NM_003076.4	299	cCc/cTc																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869552	102869552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	25	133	0	ENST00000307046.8:c.89C>T	p.Ser30Leu	p.S30L	ENST00000307046	NM_001111285.1	30	tCg/tTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133242017	133242017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	55	290	2	ENST00000320574.5:c.2339C>T	p.Ser780Leu	p.S780L	ENST00000320574	NM_006231.2	780	tCg/tTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126157	2126157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	38	387	0	ENST00000219476.3:c.2728C>T	p.Pro910Ser	p.P910S	ENST00000219476	NM_000548.3	910	Cct/Tct																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779218	3779218	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			113	11	124	0	ENST00000262367.5:c.5830G>C	p.Ala1944Pro	p.A1944P	ENST00000262367	NM_004380.2	1944	Gcc/Ccc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779622	3779622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	34	276	0	ENST00000262367.5:c.5426A>G	p.Lys1809Arg	p.K1809R	ENST00000262367	NM_004380.2	1809	aAa/aGa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3801767	3801767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	80	338	0	ENST00000262367.5:c.3739G>A	p.Glu1247Lys	p.E1247K	ENST00000262367	NM_004380.2	1247	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68846137	68846137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	58	437	0	ENST00000261769.5:c.1108G>A	p.Asp370Asn	p.D370N	ENST00000261769	NM_004360.3	370	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577123	7577124	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	69	460	0	ENST00000269305.4:c.814_815delGTinsAA	p.Val272Lys	p.V272K	ENST00000269305	NM_001126112.2	272	GTg/AAg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15967400	15967400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	74	473	1	ENST00000268712.3:c.5203G>A	p.Asp1735Asn	p.D1735N	ENST00000268712	NM_006311.3	1735	Gac/Aac																																																																														
RARA	5914	MSKCC	GRCh37	17	38512383	38512383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	26	182	0	ENST00000254066.5:c.1294C>T	p.Arg432Trp	p.R432W	ENST00000254066	NM_000964.3	432	Cgg/Tgg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59820400	59820400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	72	457	0	ENST00000259008.2:c.2353C>T	p.Pro785Ser	p.P785S	ENST00000259008	NM_032043.2	785	Cct/Tct																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136162	11136163	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	35	344	0	ENST00000344626.4:c.3146_3147delCCinsTT	p.Pro1049Leu	p.P1049L	ENST00000344626	NM_003072.3	1049	cCC/cTT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944522	40944523	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	32	341	0	ENST00000373198.4:c.1979_1980delCTinsTC	p.Ser660Phe	p.S660F	ENST00000373198	NM_133170.3	660	tCT/tTC																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164625	36164625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	55	321	0	ENST00000300305.3:c.1250C>T	p.Ser417Phe	p.S417F	ENST00000300305		417	tCc/tTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70344095	70344095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	84	400	0	ENST00000374080.3:c.1831C>T	p.His611Tyr	p.H611Y	ENST00000374080		611	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970915	21970915	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	58	302	0	ENST00000304494.5:c.443del	p.Ala148GlyfsTer45	p.A148Gfs*45	ENST00000304494	NM_000077.4	148	gCg/gg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	23	221	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7579545	7579545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	21	260	0	ENST00000269305.4:c.142delG	p.Asp48ThrfsTer75	p.D48Tfs*75	ENST00000269305	NM_001126112.2	48	Gac/ac																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024637	31024637	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	47	456	0	ENST00000375687.4:c.4127delG	p.Gly1376ValfsTer74	p.G1376Vfs*74	ENST00000375687	NM_015338.5	1374	gtG/gt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000715-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			140	98	168	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0000715-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			521	233	383	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656284	18656284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000715-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			481	226	387	0	ENST00000266497.5:c.2963C>T	p.Pro988Leu	p.P988L	ENST00000266497		988	cCa/cTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044541	47044548	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGATGA	CGAGATGA	-			P-0000715-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			223	209	419	0	ENST00000329236.7:c.1809_1816del	p.Asp603GlufsTer36	p.D603Efs*36	ENST00000329236	NM_001204466.1	602	CGAGATGAc/c																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000717-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			44	21	91	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			670	294	371	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	43	165	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			599	187	406	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430441	181430441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	215	434	0	ENST00000325404.1:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000325404	NM_003106.3	98	cGa/cAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138642	55138642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143344944		P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	120	216	0	ENST00000257290.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000257290	NM_006206.4	440	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	170	271	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			834	22	505	0	ENST00000267101.3:c.310G>C	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ctg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481671	56481671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	132	317	0	ENST00000267101.3:c.706T>C	p.Ser236Pro	p.S236P	ENST00000267101	NM_001982.3	236	Tca/Cca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47079260	47079260	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	42	223	0	ENST00000409792.3:c.7246C>G	p.Gln2416Glu	p.Q2416E	ENST00000409792	NM_014159.6	2416	Cag/Gag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803463	1803463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	24	212	0	ENST00000260795.2:c.732C>A	p.Asp244Glu	p.D244E	ENST00000260795		244	gaC/gaA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	16	130	0				ENST00000310581	NM_198253.2																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50455091	50455091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	41	199	0	ENST00000331340.3:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000331340	NM_006060.4	213	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845772	151845772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	75	297	0	ENST00000262189.6:c.13240G>A	p.Asp4414Asn	p.D4414N	ENST00000262189	NM_170606.2	4414	Gat/Aat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845780	151845780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	76	298	0	ENST00000262189.6:c.13232G>T	p.Gly4411Val	p.G4411V	ENST00000262189	NM_170606.2	4411	gGa/gTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845880	151845880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	103	397	1	ENST00000262189.6:c.13132G>A	p.Glu4378Lys	p.E4378K	ENST00000262189	NM_170606.2	4378	Gaa/Aaa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779187	135779187	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			191	150	195	0	ENST00000298552.3:c.2059G>T	p.Glu687Ter	p.E687*	ENST00000298552	NM_001162426.1	687	Gag/Tag																																																																														
EED	8726	MSKCC	GRCh37	11	85956278	85956278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	46	69	1	ENST00000263360.6:c.7G>A	p.Glu3Lys	p.E3K	ENST00000263360	NM_003797.3	3	Gag/Aag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191099	2191099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	61	481	0	ENST00000398665.3:c.353C>T	p.Ser118Leu	p.S118L	ENST00000398665	NM_032482.2	118	tCg/tTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039347	47039347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	88	229	0	ENST00000329236.7:c.739G>C	p.Ala247Pro	p.A247P	ENST00000329236	NM_001204466.1	247	Gcg/Ccg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207108	1207109	+	frameshift_variant	Frame_Shift_Ins	INS	GT	GT	AGCACC			P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	32	251	0	ENST00000326873.7:c.196_197delinsAGCACC	p.Val66SerfsTer98	p.V66Sfs*98	ENST00000326873	NM_000455.4	66	GTg/AGCACCg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259247	36259248	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	56	184	0	ENST00000300305.3:c.242_243dup	p.Leu82CysfsTer41	p.L82Cfs*41	ENST00000300305		81	-/TG																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922820	44922830	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTGCCCTGG	GCCTGCCCTGG	-			P-0000746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			250	116	240	0	ENST00000377967.4:c.1683_1693del	p.Cys562AlafsTer15	p.C562Afs*15	ENST00000377967	NM_021140.2	561	GCCTGCCCTGGg/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	39	197	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023220	27023220	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	22	321	0	ENST00000324856.7:c.326C>G	p.Pro109Arg	p.P109R	ENST00000324856	NM_006015.4	109	cCt/cGt																																																																														
BARD1	580	MSKCC	GRCh37	2	215674203	215674203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	84	504	0	ENST00000260947.4:c.91C>T	p.Arg31Cys	p.R31C	ENST00000260947	NM_000465.2	31	Cgc/Tgc																																																																														
TP63	8626	MSKCC	GRCh37	3	189526152	189526152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	102	384	1	ENST00000264731.3:c.416C>T	p.Ala139Val	p.A139V	ENST00000264731	NM_003722.4	139	gCg/gTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55948738	55948738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	100	495	0	ENST00000263923.4:c.3727C>G	p.Pro1243Ala	p.P1243A	ENST00000263923	NM_002253.2	1243	Ccg/Gcg																																																																														
KDR	3791	MSKCC	GRCh37	4	55979608	55979608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	59	509	0	ENST00000263923.4:c.839A>G	p.Gln280Arg	p.Q280R	ENST00000263923	NM_002253.2	280	cAg/cGg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007298	143007298	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	74	519	0	ENST00000262992.4:c.2486C>G	p.Thr829Arg	p.T829R	ENST00000262992	NM_001101669.1	829	aCg/aGg																																																																														
SDHA	6389	MSKCC	GRCh37	5	228312	228312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			76	40	97	0	ENST00000264932.6:c.634G>A	p.Asp212Asn	p.D212N	ENST00000264932	NM_004168.2	212	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517911	8517911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	63	464	0	ENST00000356435.5:c.1480G>T	p.Ala494Ser	p.A494S	ENST00000356435		494	Gct/Tct																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117365	115117365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	218	378	0	ENST00000257566.3:c.809C>A	p.Thr270Lys	p.T270K	ENST00000257566	NM_016569.3	270	aCa/aAa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518719	103518719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	37	156	0	ENST00000355739.4:c.2307C>A	p.Phe769Leu	p.F769L	ENST00000355739	NM_000123.3	769	ttC/ttA																																																																														
RBM10	8241	MSKCC	GRCh37	X	47035920	47035920	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	111	352	0	ENST00000329236.7:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000329236	NM_001204466.1	123	Cag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245188	46245188	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	154	273	0	ENST00000334344.6:c.3284del	p.Pro1095LeufsTer61	p.P1095Lfs*61	ENST00000334344	NM_152641.2	1094	agC/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577133	7577150	+	inframe_deletion	In_Frame_Del	DEL	TGTTCCGTCCCAGTAGAT	TGTTCCGTCCCAGTAGAT	-			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	74	496	0	ENST00000269305.4:c.788_805del	p.Asn263_Asn268del	p.N263_N268del	ENST00000269305	NM_001126112.2	263	aATCTACTGGGACGGAACAgc/agc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31385044	31385045	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0000819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	32	302	0	ENST00000328111.2:c.1430dup	p.Tyr477Ter	p.Y477*	ENST00000328111	NM_006892.3	477	tac/tAac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094330	27094330	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	65	174	0	ENST00000324856.7:c.3038A>T	p.Glu1013Val	p.E1013V	ENST00000324856	NM_006015.4	1013	gAg/gTg																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797466	45797466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	76	242	0	ENST00000372115.3:c.1011G>T	p.Gln337His	p.Q337H	ENST00000372115	NM_001048171.1	337	caG/caT																																																																														
DDR2	4921	MSKCC	GRCh37	1	162737071	162737071	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	221	279	0	ENST00000367921.3:c.1215G>T	p.Leu405Phe	p.L405F	ENST00000367921	NM_006182.2	405	ttG/ttT																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967300	25967300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	178	215	2	ENST00000435504.4:c.1906G>A	p.Val636Ile	p.V636I	ENST00000435504		636	Gtc/Atc																																																																														
ALK	238	MSKCC	GRCh37	2	29519873	29519873	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	88	324	0	ENST00000389048.3:c.1698G>C	p.Leu566Phe	p.L566F	ENST00000389048	NM_004304.4	566	ttG/ttC																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251597	212251597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	111	224	0	ENST00000342788.4:c.3462G>T	p.Met1154Ile	p.M1154I	ENST00000342788	NM_005235.2	1154	atG/atT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212587241	212587241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	115	206	0	ENST00000342788.4:c.760G>T	p.Asp254Tyr	p.D254Y	ENST00000342788	NM_005235.2	254	Gac/Tac																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71161758	71161758	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	266	270	0	ENST00000318789.4:c.211C>T	p.Gln71Ter	p.Q71*	ENST00000318789	NM_032682.5	71	Cag/Tag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911585	134911585	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	54	181	0	ENST00000398015.3:c.2050G>T	p.Glu684Ter	p.E684*	ENST00000398015	NM_004441.4	684	Gag/Tag																																																																														
BCL6	604	MSKCC	GRCh37	3	187447122	187447122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	198	216	0	ENST00000232014.4:c.1071G>T	p.Gln357His	p.Q357H	ENST00000232014	NM_001130845.1	357	caG/caT																																																																														
KDR	3791	MSKCC	GRCh37	4	55981071	55981071	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	93	229	0	ENST00000263923.4:c.628C>T	p.Gln210Ter	p.Q210*	ENST00000263923	NM_002253.2	210	Cag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467391	66467391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	85	167	0	ENST00000273854.3:c.878C>A	p.Ala293Glu	p.A293E	ENST00000273854	NM_004439.5	293	gCa/gAa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143033712	143033712	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	354	364	0	ENST00000262992.4:c.2259G>C	p.Gln753His	p.Q753H	ENST00000262992	NM_001101669.1	753	caG/caC																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576362	67576362	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	91	187	0	ENST00000274335.5:c.641A>T	p.Gln214Leu	p.Q214L	ENST00000274335		214	cAa/cTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32171648	32171648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	46	270	0	ENST00000375023.3:c.3130G>C	p.Glu1044Gln	p.E1044Q	ENST00000375023	NM_004557.3	1044	Gag/Cag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004331	150004331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			651	170	459	0	ENST00000253339.5:c.1894C>G	p.Gln632Glu	p.Q632E	ENST00000253339		632	Caa/Gaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81346592	81346592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	158	297	0	ENST00000222390.5:c.1361C>T	p.Thr454Met	p.T454M	ENST00000222390	NM_000601.4	454	aCg/aTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078363	5078363	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	106	204	0	ENST00000381652.3:c.2050G>T	p.Glu684Ter	p.E684*	ENST00000381652	NM_004972.3	684	Gaa/Taa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249612	110249612	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	100	313	0	ENST00000374672.4:c.1063C>G	p.Gln355Glu	p.Q355E	ENST00000374672	NM_004235.4	355	Cag/Gag																																																																														
ABL1	25	MSKCC	GRCh37	9	133747515	133747515	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	55	210	0	ENST00000318560.5:c.823-1G>C		p.X275_splice	ENST00000318560	NM_005157.4	275																																																																															
TET1	80312	MSKCC	GRCh37	10	70405353	70405353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	99	234	0	ENST00000373644.4:c.2867G>C	p.Cys956Ser	p.C956S	ENST00000373644	NM_030625.2	956	tGt/tCt																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154868	2154868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	52	357	0	ENST00000434045.2:c.353G>T	p.Arg118Leu	p.R118L	ENST00000434045	NM_001127598.1	118	cGc/cTc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67198862	67198862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	163	181	0	ENST00000312629.5:c.333G>T	p.Lys111Asn	p.K111N	ENST00000312629	NM_003952.2	111	aaG/aaT																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125499297	125499299	+	missense_variant	Missense_Mutation	ONP	TGG	TGG	GGT			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	102	265	0	ENST00000428830.2:c.366_368delinsGGT	p.His122_Gly123delinsGlnVal	p.H122_G123delinsQV	ENST00000428830	NM_001114121.2	122	caTGGt/caGGTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18439825	18439825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			717	183	281	1	ENST00000266497.5:c.723C>A	p.Ser241Arg	p.S241R	ENST00000266497		241	agC/agA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18473908	18473908	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	138	291	0	ENST00000266497.5:c.1150C>A	p.His384Asn	p.H384N	ENST00000266497		384	Cac/Aac																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945075	31945075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	39	135	0	ENST00000340398.3:c.26G>T	p.Arg9Leu	p.R9L	ENST00000340398	NM_001013699.2	9	cGt/cTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912617	32912617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	130	215	0	ENST00000380152.3:c.4125G>T	p.Glu1375Asp	p.E1375D	ENST00000380152		1375	gaG/gaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915157	32915157	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			806	128	401	0	ENST00000380152.3:c.6665A>C	p.Tyr2222Ser	p.Y2222S	ENST00000380152		2222	tAc/tCc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929041	32929041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	89	241	0	ENST00000380152.3:c.7051G>A	p.Ala2351Thr	p.A2351T	ENST00000380152		2351	Gca/Aca																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590930	95590930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	96	209	0	ENST00000343455.3:c.979A>G	p.Arg327Gly	p.R327G	ENST00000343455	NM_177438.2	327	Aga/Gga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423565	88423565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			493	199	361	0	ENST00000360948.2:c.2270G>T	p.Gly757Val	p.G757V	ENST00000360948	NM_001012338.2	757	gGg/gTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456333	99456333	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	169	173	0	ENST00000268035.6:c.1650C>G	p.Asn550Lys	p.N550K	ENST00000268035	NM_000875.3	550	aaC/aaG																																																																														
TSC2	7249	MSKCC	GRCh37	16	2103346	2103346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	102	214	0	ENST00000219476.3:c.229G>A	p.Ala77Thr	p.A77T	ENST00000219476	NM_000548.3	77	Gca/Aca																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126522	2126522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	119	413	0	ENST00000219476.3:c.2773G>T	p.Asp925Tyr	p.D925Y	ENST00000219476	NM_000548.3	925	Gat/Tat																																																																														
FANCA	2175	MSKCC	GRCh37	16	89831417	89831417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	49	235	0	ENST00000389301.3:c.2659G>A	p.Asp887Asn	p.D887N	ENST00000389301	NM_000135.2	887	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	82	209	0	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45422971	45422971	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			787	232	499	0	ENST00000262160.6:c.157A>G	p.Lys53Glu	p.K53E	ENST00000262160	NM_005901.5	53	Aag/Gag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5218518	5218518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	107	332	0	ENST00000357368.4:c.3961A>T	p.Thr1321Ser	p.T1321S	ENST00000357368	NM_002850.3	1321	Acc/Tcc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278061	18278061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	21	211	0	ENST00000222254.8:c.1681A>G	p.Asn561Asp	p.N561D	ENST00000222254	NM_005027.3	561	Aac/Gac																																																																														
AXL	558	MSKCC	GRCh37	19	41765564	41765564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	77	388	0	ENST00000301178.4:c.2440C>T	p.Gln814Ter	p.Q814*	ENST00000301178	NM_021913.4	814	Cag/Tag																																																																														
CIC	23152	MSKCC	GRCh37	19	42794446	42794446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	183	603	0	ENST00000575354.2:c.1526C>T	p.Pro509Leu	p.P509L	ENST00000575354	NM_015125.3	509	cCa/cTa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317419	1317419	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	72	323	0				ENST00000381566																																																																																	
CRLF2	64109	MSKCC	GRCh37	X	1317481	1317481	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	121	417	0				ENST00000381566																																																																																	
AR	367	MSKCC	GRCh37	X	66766228	66766228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	61	110	0	ENST00000374690.3:c.1240C>A	p.Leu414Met	p.L414M	ENST00000374690	NM_000044.3	414	Ctg/Atg																																																																														
ATRX	546	MSKCC	GRCh37	X	76918888	76918888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	220	370	0	ENST00000373344.5:c.4103G>T	p.Gly1368Val	p.G1368V	ENST00000373344	NM_000489.3	1368	gGc/gTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11114034	11114036	+	frameshift_variant	Frame_Shift_Del	DEL	GTC	GTC	TG			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	73	223	0	ENST00000344626.4:c.1962_1964delinsTG	p.Arg654SerfsTer120	p.R654Sfs*120	ENST00000344626	NM_003072.3	654	agGTCt/agTGt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942528	17942529	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	34	143	0	ENST00000458235.1:c.2759_2760del	p.Arg920ProfsTer47	p.R920Pfs*47	ENST00000458235	NM_000215.3	920	cGC/c																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31387095	31387095	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	72	268	0	ENST00000328111.2:c.1722del	p.Ile575PhefsTer15	p.I575Ffs*15	ENST00000328111	NM_006892.3	574	Ccc/cc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29095894	29095894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000831-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			686	102	435	0	ENST00000328354.6:c.940del	p.Val314TrpfsTer6	p.V314Wfs*6	ENST00000328354	NM_007194.3	314	Gtg/tg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	83	146	0				ENST00000310581	NM_198253.2																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0000877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	72	280	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
PARP1	142	MSKCC	GRCh37	1	226549229	226549229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	119	302	0	ENST00000366794.5:c.2977G>C	p.Asp993His	p.D993H	ENST00000366794	NM_001618.3	993	Gat/Cat																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966652	25966652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	108	253	0	ENST00000435504.4:c.2554G>C	p.Asp852His	p.D852H	ENST00000435504		852	Gat/Cat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420609	49420609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	144	212	0	ENST00000301067.7:c.15140C>T	p.Ala5047Val	p.A5047V	ENST00000301067	NM_003482.3	5047	gCc/gTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48955382	48955382	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0000877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			112	92	144	0	ENST00000267163.4:c.1499-1G>A		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	219	212	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78704381	78704381	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs150208057		P-0000877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			584	125	219	0	ENST00000306801.3:c.529C>G	p.Leu177Val	p.L177V	ENST00000306801	NM_020761.2	177	Ctg/Gtg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420908	49420908	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	160	317	0	ENST00000301067.7:c.14841del	p.Ser4948HisfsTer47	p.S4948Hfs*47	ENST00000301067	NM_003482.3	4947	ccC/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000889-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	296	213	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	47	89	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	76	158	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0000891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	121	206	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620446	52620446	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			711	102	338	0	ENST00000394830.3:c.3307G>C	p.Glu1103Gln	p.E1103Q	ENST00000394830	NM_018313.4	1103	Gaa/Caa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	123	209	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864266	151864266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			735	246	322	0	ENST00000262189.6:c.9715G>A	p.Glu3239Lys	p.E3239K	ENST00000262189	NM_170606.2	3239	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864386	151864386	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	216	333	0	ENST00000262189.6:c.9595G>T	p.Glu3199Ter	p.E3199*	ENST00000262189	NM_170606.2	3199	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427111	49427111	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	175	355	0	ENST00000301067.7:c.11377C>T	p.Gln3793Ter	p.Q3793*	ENST00000301067	NM_003482.3	3793	Caa/Taa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651943	36651944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGCCCC			P-0000891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	85	166	0	ENST00000244741.5:c.71_72insCCGGCCC	p.Val25ArgfsTer13	p.V25Rfs*13	ENST00000244741	NM_000389.4	22	ttc/ttCGGCCCCc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779018	3779018	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	79	131	0	ENST00000262367.5:c.6030del	p.Val2012SerfsTer28	p.V2012Sfs*28	ENST00000262367	NM_004380.2	2010	ggG/gg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808922	1808926	+	frameshift_variant	Frame_Shift_Del	DEL	ACGAC	ACGAC	CCG			P-0000891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	164	454	0	ENST00000260795.2:c.2354_2358delinsCCG	p.Asp785AlafsTer31	p.D785Afs*31	ENST00000260795		785	gACGAC/gCCG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	110	139	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	353	181	0				ENST00000310581	NM_198253.2																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212989592	212989592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	248	311	0	ENST00000342788.4:c.119C>T	p.Ser40Phe	p.S40F	ENST00000342788	NM_005235.2	40	tCt/tTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549764	187549764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1335	292	516	0	ENST00000441802.2:c.4477C>G	p.Leu1493Val	p.L1493V	ENST00000441802	NM_005245.3	1493	Ctg/Gtg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651917	36651917	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	693	237	0	ENST00000244741.5:c.39C>A	p.Cys13Ter	p.C13*	ENST00000244741	NM_000389.4	13	tgC/tgA																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87339176	87339176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	160	356	0	ENST00000277120.3:c.758C>T	p.Thr253Ile	p.T253I	ENST00000277120		253	aCt/aTt																																																																														
ATM	472	MSKCC	GRCh37	11	108098542	108098542	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	210	286	1	ENST00000278616.4:c.112G>T	p.Glu38Ter	p.E38*	ENST00000278616	NM_000051.3	38	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48947596	48947596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	355	437	0	ENST00000267163.4:c.1183C>T	p.Gln395Ter	p.Q395*	ENST00000267163	NM_000321.2	395	Caa/Taa																																																																														
CIC	23152	MSKCC	GRCh37	19	42791024	42791024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1030	176	387	0	ENST00000575354.2:c.169G>A	p.Glu57Lys	p.E57K	ENST00000575354	NM_015125.3	57	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106342	27106343	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	177	293	0	ENST00000324856.7:c.5955dup	p.Asn1986GlnfsTer13	p.N1986Qfs*13	ENST00000324856	NM_006015.4	1985	tcc/tCcc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			735	636	411	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720720	89720721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			55	21	35	0	ENST00000371953.3:c.875dupA	p.Asn292LysfsTer6	p.N292Kfs*6	ENST00000371953	NM_000314.4	291	gaa/gAaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0000895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	249	187	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	500	383	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857371	9857371	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			767	374	397	0	ENST00000330684.3:c.4030T>A	p.Phe1344Ile	p.F1344I	ENST00000330684	NM_001134407.1	1344	Ttc/Atc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733217	40733217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	274	242	1	ENST00000373198.4:c.3589G>A	p.Glu1197Lys	p.E1197K	ENST00000373198	NM_133170.3	1197	Gaa/Aaa																																																																														
B2M	567	MSKCC	GRCh37	15	45003759	45003759	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	512	327	0	ENST00000558401.1:c.16del	p.Ala6ProfsTer2	p.A6Pfs*2	ENST00000558401	NM_004048.2	5	gtG/gt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	30	290	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	162	136	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	385	452	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	416	299	3	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246137	46246137	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	205	255	0	ENST00000334344.6:c.4231C>T	p.Gln1411Ter	p.Q1411*	ENST00000334344	NM_152641.2	1411	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	239	212	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190732639	190732639	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	63	272	0	ENST00000441310.2:c.2457G>C	p.Lys819Asn	p.K819N	ENST00000441310	NM_000534.4	819	aaG/aaC																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266505	198266505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	63	333	0	ENST00000335508.6:c.2331C>A	p.Phe777Leu	p.F777L	ENST00000335508	NM_012433.2	777	ttC/ttA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125496	47125496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			959	59	471	0	ENST00000409792.3:c.5774C>T	p.Ser1925Leu	p.S1925L	ENST00000409792	NM_014159.6	1925	tCa/tTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247244	153247244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			529	123	494	0	ENST00000281708.4:c.1558G>A	p.Asp520Asn	p.D520N	ENST00000281708	NM_033632.3	520	Gat/Aat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247355	153247355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	226	251	0	ENST00000281708.4:c.1447C>T	p.Leu483Phe	p.L483F	ENST00000281708	NM_033632.3	483	Ctt/Ttt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576442	67576442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	269	439	0	ENST00000274335.5:c.721C>T	p.Gln241Ter	p.Q241*	ENST00000274335		241	Cag/Tag																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158626	26158626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	111	70	0	ENST00000289316.2:c.229G>A	p.Glu77Lys	p.E77K	ENST00000289316	NM_138720.2	77	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445737	49445737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			719	436	498	1	ENST00000301067.7:c.1729G>C	p.Glu577Gln	p.E577Q	ENST00000301067	NM_003482.3	577	Gag/Cag																																																																														
MDM2	4193	MSKCC	GRCh37	12	69222581	69222581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			621	49	379	0	ENST00000462284.1:c.554G>C	p.Arg185Pro	p.R185P	ENST00000462284	NM_002392.5	185	cGa/cCa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69230488	69230488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	31	276	0	ENST00000462284.1:c.877G>A	p.Asp293Asn	p.D293N	ENST00000462284	NM_002392.5	293	Gat/Aat																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233330	69233330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	30	248	0	ENST00000462284.1:c.1195G>C	p.Asp399His	p.D399H	ENST00000462284	NM_002392.5	399	Gac/Cac																																																																														
RB1	5925	MSKCC	GRCh37	13	48947563	48947563	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	124	364	0	ENST00000267163.4:c.1150C>T	p.Gln384Ter	p.Q384*	ENST00000267163	NM_000321.2	384	Caa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	49027160	49027160	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	229	449	0	ENST00000267163.4:c.1727C>G	p.Ser576Ter	p.S576*	ENST00000267163	NM_000321.2	576	tCa/tGa																																																																														
BLM	641	MSKCC	GRCh37	15	91303853	91303853	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	96	214	0	ENST00000355112.3:c.1250A>G	p.Asn417Ser	p.N417S	ENST00000355112	NM_000057.2	417	aAt/aGt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222967	5222967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	79	187	1	ENST00000357368.4:c.2836G>A	p.Val946Ile	p.V946I	ENST00000357368	NM_002850.3	946	Gtc/Atc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868136	45868136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	309	422	0	ENST00000391945.4:c.554G>A	p.Arg185Gln	p.R185Q	ENST00000391945	NM_000400.3	185	cGg/cAg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872197	45872197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	331	267	0	ENST00000391945.4:c.237G>T	p.Glu79Asp	p.E79D	ENST00000391945	NM_000400.3	79	gaG/gaT																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22123531	22123531	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	63	619	0	ENST00000215832.6:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000215832	NM_002745.4	349	Gaa/Taa																																																																														
MED12	9968	MSKCC	GRCh37	X	70338697	70338697	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	839	327	0	ENST00000374080.3:c.93G>C	p.Gln31His	p.Q31H	ENST00000374080		31	caG/caC																																																																														
MED12	9968	MSKCC	GRCh37	X	70341434	70341434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	487	230	1	ENST00000374080.3:c.869C>T	p.Ser290Phe	p.S290F	ENST00000374080		290	tCt/tTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781324	3781326	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	331	305	0	ENST00000262367.5:c.5039_5041delCCT	p.Ser1680del	p.S1680del	ENST00000262367	NM_004380.2	1680	tCCTtg/ttg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843486	3843493	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGCTCT	CTTGCTCT	-			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			745	67	342	0	ENST00000262367.5:c.1110_1117del	p.Glu371LysfsTer53	p.E371Kfs*53	ENST00000262367	NM_004380.2	370	cgAGAGCAAGca/cgca																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942770	44942772	+	frameshift_variant	Frame_Shift_Ins	INS	ATC	ATC	TGAT			P-0000908-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			47	366	313	0	ENST00000377967.4:c.3350_3352delinsTGAT	p.Asn1117MetfsTer34	p.N1117Mfs*34	ENST00000377967	NM_021140.2	1117	aATCtt/aTGATtt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			147	30	119	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	16	247	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251754	212251754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	76	199	0	ENST00000342788.4:c.3305T>G	p.Phe1102Cys	p.F1102C	ENST00000342788	NM_005235.2	1102	tTt/tGt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781419	135781419	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	254	224	0	ENST00000298552.3:c.1546C>T	p.Gln516Ter	p.Q516*	ENST00000298552	NM_001162426.1	516	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	203	313	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303221	15303221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	57	340	0	ENST00000263388.2:c.307C>T	p.Arg103Ter	p.R103*	ENST00000263388	NM_000435.2	103	Cga/Tga																																																																														
AXL	558	MSKCC	GRCh37	19	41743883	41743883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	278	432	0	ENST00000301178.4:c.818C>T	p.Ala273Val	p.A273V	ENST00000301178	NM_021913.4	273	gCg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974770	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGT			P-0000916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	41	184	0	ENST00000304494.5:c.52_57dup	p.Thr18_Ala19dup	p.T18_A19dup	ENST00000304494	NM_000077.4	18	-/ACGGCC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974770	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGT			P-0000916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	41	184	0	ENST00000304494.5:c.52_57dup	p.Thr18_Ala19dup	p.T18_A19dup	ENST00000304494	NM_000077.4	18	-/ACGGCC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	60	192	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	241	310	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295229	1295229	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	59	190	0				ENST00000310581	NM_198253.2																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120484148	120484148	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			669	154	311	0	ENST00000256646.2:c.2981+1G>T		p.X994_splice	ENST00000256646	NM_024408.3	994																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741873	162741873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			630	139	234	0	ENST00000367921.3:c.1564G>T	p.Ala522Ser	p.A522S	ENST00000367921	NM_006182.2	522	Gca/Tca																																																																														
PARP1	142	MSKCC	GRCh37	1	226555216	226555216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			753	161	460	0	ENST00000366794.5:c.2371G>A	p.Asp791Asn	p.D791N	ENST00000366794	NM_001618.3	791	Gat/Aat																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967135	25967135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			556	117	275	0	ENST00000435504.4:c.2071C>T	p.Pro691Ser	p.P691S	ENST00000435504		691	Cca/Tca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285210	212285210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			737	110	421	0	ENST00000342788.4:c.3091C>T	p.Pro1031Ser	p.P1031S	ENST00000342788	NM_005235.2	1031	Cca/Tca																																																																														
ATR	545	MSKCC	GRCh37	3	142215937	142215937	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs141429029		P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			741	96	383	0	ENST00000350721.4:c.5656C>T	p.Arg1886Ter	p.R1886*	ENST00000350721	NM_001184.3	1886	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142232396	142232396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	88	270	0	ENST00000350721.4:c.4588C>T	p.Pro1530Ser	p.P1530S	ENST00000350721	NM_001184.3	1530	Cca/Tca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947844	178947844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	131	401	0	ENST00000263967.3:c.2719G>A	p.Ala907Thr	p.A907T	ENST00000263967	NM_006218.2	907	Gct/Act																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185184651	185184651	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			867	191	544	0	ENST00000265026.3:c.1543T>A	p.Tyr515Asn	p.Y515N	ENST00000265026	NM_004721.4	515	Tac/Aac																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190831	185190831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			710	168	383	1	ENST00000265026.3:c.1712G>A	p.Gly571Glu	p.G571E	ENST00000265026	NM_004721.4	571	gGa/gAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231707	66231707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			843	130	468	0	ENST00000273854.3:c.1993G>A	p.Glu665Lys	p.E665K	ENST00000273854	NM_004439.5	665	Gaa/Aaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356161	66356161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			798	135	315	0	ENST00000273854.3:c.1336G>A	p.Gly446Arg	p.G446R	ENST00000273854	NM_004439.5	446	Gga/Aga																																																																														
TET2	54790	MSKCC	GRCh37	4	106194024	106194024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			828	149	308	0	ENST00000380013.4:c.4486C>T	p.Pro1496Ser	p.P1496S	ENST00000380013	NM_001127208.2	1496	Cca/Tca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517930	187517930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			866	111	430	0	ENST00000441802.2:c.12764C>T	p.Ser4255Phe	p.S4255F	ENST00000441802	NM_005245.3	4255	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525029	187525029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	83	247	0	ENST00000441802.2:c.10651T>C	p.Phe3551Leu	p.F3551L	ENST00000441802	NM_005245.3	3551	Ttc/Ctc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590370	67590370	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	99	196	0	ENST00000274335.5:c.1432C>T	p.Gln478Ter	p.Q478*	ENST00000274335		478	Caa/Taa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287262	33287262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	122	308	0	ENST00000374542.5:c.1835C>T	p.Ser612Phe	p.S612F	ENST00000374542	NM_001141970.1	612	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631322	117631322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			953	161	629	0	ENST00000368508.3:c.6356G>A	p.Gly2119Glu	p.G2119E	ENST00000368508	NM_002944.2	2119	gGg/gAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662626	117662626	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			821	129	386	0	ENST00000368508.3:c.4839T>A	p.Phe1613Leu	p.F1613L	ENST00000368508	NM_002944.2	1613	ttT/ttA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	139	224	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	139	224	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399124	139399124	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	84	333	0	ENST00000277541.6:c.5018+1G>A		p.X1673_splice	ENST00000277541	NM_017617.3	1673																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139417641	139417641	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	26	277	0	ENST00000277541.6:c.404-1G>A		p.X135_splice	ENST00000277541	NM_017617.3	135																																																																															
CHEK1	1111	MSKCC	GRCh37	11	125503148	125503148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			826	154	430	0	ENST00000428830.2:c.515C>T	p.Pro172Leu	p.P172L	ENST00000428830	NM_001114121.2	172	cCa/cTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246464	46246464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			782	171	367	0	ENST00000334344.6:c.4558G>A	p.Glu1520Lys	p.E1520K	ENST00000334344	NM_152641.2	1520	Gag/Aag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434076	121434076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			649	193	479	0	ENST00000257555.6:c.967G>A	p.Gly323Arg	p.G323R	ENST00000257555		323	Gga/Aga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436737	110436737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	115	377	0	ENST00000375856.3:c.1664C>T	p.Ser555Phe	p.S555F	ENST00000375856	NM_003749.2	555	tCc/tTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678440	88678440	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	167	552	0	ENST00000360948.2:c.1096A>C	p.Asn366His	p.N366H	ENST00000360948	NM_001012338.2	366	Aac/Cac																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347204	347204	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	138	449	0	ENST00000262320.3:c.1807A>C	p.Lys603Gln	p.K603Q	ENST00000262320	NM_003502.3	603	Aaa/Caa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16068342	16068342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	10	56	0	ENST00000268712.3:c.569G>A	p.Arg190Gln	p.R190Q	ENST00000268712	NM_006311.3	190	cGa/cAa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41251794	41251794	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	281	490	0	ENST00000357654.3:c.545T>C	p.Leu182Ser	p.L182S	ENST00000357654	NM_007294.3	182	tTg/tCg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533791	63533791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	189	295	0	ENST00000307078.5:c.1363C>T	p.Pro455Ser	p.P455S	ENST00000307078	NM_004655.3	455	Cca/Tca																																																																														
INSR	3643	MSKCC	GRCh37	19	7184562	7184562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	87	148	0	ENST00000302850.5:c.739G>A	p.Asp247Asn	p.D247N	ENST00000302850	NM_000208.2	247	Gac/Aac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285130	15285130	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	128	359	0	ENST00000263388.2:c.4485G>A	p.Trp1495Ter	p.W1495*	ENST00000263388	NM_000435.2	1495	tgG/tgA																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288469	15288469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	25	74	0	ENST00000263388.2:c.4270C>T	p.Pro1424Ser	p.P1424S	ENST00000263388	NM_000435.2	1424	Ccc/Tcc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546847	9546847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	161	279	0	ENST00000353224.5:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000353224	NM_177990.2	392	tCg/tTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41521930	41521930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			671	142	531	0	ENST00000263253.7:c.792G>T	p.Gln264His	p.Q264H	ENST00000263253	NM_001429.3	264	caG/caT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922863	39922863	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	170	317	0	ENST00000378444.4:c.3845A>G	p.Gln1282Arg	p.Q1282R	ENST00000378444	NM_001123385.1	1282	cAa/cGa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198087	185198095	+	inframe_deletion	In_Frame_Del	DEL	GATGGAGAA	GATGGAGAA	-			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	82	351	0	ENST00000265026.3:c.2571_2579del	p.Asp857_Glu859del	p.D857_E859del	ENST00000265026	NM_004721.4	857	GATGGAGAA/-																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851784	134851785	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			644	116	335	0	ENST00000398015.3:c.1190_1191delinsAA	p.Trp397Ter	p.W397*	ENST00000398015	NM_004441.4	397	tGG/tAA																																																																														
ABL1	25	MSKCC	GRCh37	9	133760346	133760347	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	90	424	0	ENST00000318560.5:c.2669_2670delinsAA	p.Gly890Glu	p.G890E	ENST00000318560	NM_005157.4	890	gGG/gAA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578289	7578290	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0000919-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	103	371	0	ENST00000269305.4:c.560-1_560delinsAA		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000926-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	35	167	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37866075	37866075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000926-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	61	373	0	ENST00000269571.5:c.584G>A	p.Cys195Tyr	p.C195Y	ENST00000269571		195	tGt/tAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295243	1295243	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs35550267		P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	50	209	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295242	1295242	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			76	49	209	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	69	293	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261778	16261778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			149	46	277	0	ENST00000375759.3:c.9043C>T	p.His3015Tyr	p.H3015Y	ENST00000375759	NM_015001.2	3015	Cat/Tat																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468090	120468090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	91	352	0	ENST00000256646.2:c.4349G>A	p.Trp1450Ter	p.W1450*	ENST00000256646	NM_024408.3	1450	tGg/tAg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156837941	156837941	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	117	379	0	ENST00000524377.1:c.474G>A	p.Trp158Ter	p.W158*	ENST00000524377	NM_002529.3	158	tgG/tgA																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725501	162725501	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	93	383	0	ENST00000367921.3:c.613C>G	p.Pro205Ala	p.P205A	ENST00000367921	NM_006182.2	205	Cct/Gct																																																																														
TET2	54790	MSKCC	GRCh37	4	106193980	106193980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	97	305	0	ENST00000380013.4:c.4442C>T	p.Ser1481Phe	p.S1481F	ENST00000380013	NM_001127208.2	1481	tCc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332580	153332580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			343	125	475	0	ENST00000281708.4:c.376G>A	p.Asp126Asn	p.D126N	ENST00000281708	NM_033632.3	126	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539841	187539841	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	124	455	0	ENST00000441802.2:c.7899T>A	p.Tyr2633Ter	p.Y2633*	ENST00000441802	NM_005245.3	2633	taT/taA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557280	187557280	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	125	389	0	ENST00000441802.2:c.4082C>G	p.Ser1361Ter	p.S1361*	ENST00000441802	NM_005245.3	1361	tCa/tGa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149457716	149457716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	75	321	0	ENST00000286301.3:c.688G>A	p.Asp230Asn	p.D230N	ENST00000286301	NM_005211.3	230	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168695	32168695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143103753		P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	93	405	0	ENST00000375023.3:c.4228C>T	p.Arg1410Cys	p.R1410C	ENST00000375023	NM_004557.3	1410	Cgc/Tgc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553593	106553593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	67	201	0	ENST00000369096.4:c.1558G>A	p.Gly520Arg	p.G520R	ENST00000369096	NM_001198.3	520	Gga/Aga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509747	106509747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	108	350	0	ENST00000359195.3:c.1741G>A	p.Glu581Lys	p.E581K	ENST00000359195	NM_002649.2	581	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845973	151845973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	98	507	0	ENST00000262189.6:c.13039C>T	p.Pro4347Ser	p.P4347S	ENST00000262189	NM_170606.2	4347	Ccg/Tcg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945526	151945526	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	53	118	0	ENST00000262189.6:c.1993G>C	p.Glu665Gln	p.E665Q	ENST00000262189	NM_170606.2	665	Gaa/Caa																																																																														
NBN	4683	MSKCC	GRCh37	8	90965912	90965912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	98	309	0	ENST00000265433.3:c.1405G>A	p.Asp469Asn	p.D469N	ENST00000265433	NM_002485.4	469	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971080	21971080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	92	246	1	ENST00000304494.5:c.278C>A	p.Thr93Lys	p.T93K	ENST00000304494	NM_000077.4	93	aCg/aAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971080	21971080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	92	246	1	ENST00000304494.5:c.278C>A	p.Thr93Lys	p.T93K	ENST00000304494	NM_000077.4	93	aCg/aAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971080	21971080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	92	246	1	ENST00000304494.5:c.278C>A	p.Thr93Lys	p.T93K	ENST00000304494	NM_000077.4	93	aCg/aAg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101911511	101911511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	126	267	0	ENST00000374994.4:c.1436G>A	p.Gly479Glu	p.G479E	ENST00000374994	NM_004612.2	479	gGa/gAa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412245	139412245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			97	262	409	0	ENST00000277541.6:c.1400G>T	p.Cys467Phe	p.C467F	ENST00000277541	NM_017617.3	467	tGc/tTc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850650	63850650	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	74	256	0	ENST00000279873.7:c.1428G>C	p.Glu476Asp	p.E476D	ENST00000279873	NM_032199.2	476	gaG/gaC																																																																														
ATM	472	MSKCC	GRCh37	11	108173667	108173667	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	98	374	0	ENST00000278616.4:c.5407G>C	p.Asp1803His	p.D1803H	ENST00000278616	NM_000051.3	1803	Gac/Cac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246177	46246177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	75	376	0	ENST00000334344.6:c.4271G>A	p.Gly1424Asp	p.G1424D	ENST00000334344	NM_152641.2	1424	gGt/gAt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549022	21549022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	70	209	0	ENST00000382592.4:c.3254C>T	p.Pro1085Leu	p.P1085L	ENST00000382592	NM_014572.2	1085	cCt/cTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001970	29001970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	50	314	0	ENST00000282397.4:c.1195G>A	p.Asp399Asn	p.D399N	ENST00000282397	NM_002019.4	399	Gat/Aat																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465531	99465531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	106	399	0	ENST00000268035.6:c.2356G>A	p.Glu786Lys	p.E786K	ENST00000268035	NM_000875.3	786	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916193	9916193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	106	495	0	ENST00000330684.3:c.2096C>T	p.Pro699Leu	p.P699L	ENST00000330684	NM_001134407.1	699	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	91	444	0	ENST00000269305.4:c.857A>T	p.Glu286Val	p.E286V	ENST00000269305	NM_001126112.2	286	gAa/gTa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15975521	15975521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	95	393	0	ENST00000268712.3:c.3833C>T	p.Pro1278Leu	p.P1278L	ENST00000268712	NM_006311.3	1278	cCc/cTc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30320942	30320942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	149	561	0	ENST00000322652.5:c.1352C>T	p.Pro451Leu	p.P451L	ENST00000322652	NM_015355.2	451	cCt/cTt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896585	78896585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	114	514	0	ENST00000306801.3:c.2582C>T	p.Pro861Leu	p.P861L	ENST00000306801	NM_020761.2	861	cCc/cTc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	74	162	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272236	15272236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	51	228	0	ENST00000263388.2:c.6203G>A	p.Gly2068Glu	p.G2068E	ENST00000263388	NM_000435.2	2068	gGg/gAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295180	15295180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	87	384	0	ENST00000263388.2:c.2492G>A	p.Gly831Glu	p.G831E	ENST00000263388	NM_000435.2	831	gGg/gAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302560	15302560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	76	377	0	ENST00000263388.2:c.798G>A	p.Trp266Ter	p.W266*	ENST00000263388	NM_000435.2	266	tgG/tgA																																																																														
AXL	558	MSKCC	GRCh37	19	41727910	41727910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	117	519	1	ENST00000301178.4:c.535C>T	p.Pro179Ser	p.P179S	ENST00000301178	NM_021913.4	179	Ccc/Tcc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52709301	52709301	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	95	311	0	ENST00000322088.6:c.255C>G	p.Tyr85Ter	p.Y85*	ENST00000322088	NM_014225.5	85	taC/taG																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022326	31022326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	130	490	0	ENST00000375687.4:c.1811C>T	p.Ser604Phe	p.S604F	ENST00000375687	NM_015338.5	604	tCc/tTc																																																																														
SRC	6714	MSKCC	GRCh37	20	36014525	36014525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	37	451	0	ENST00000358208.4:c.298G>C	p.Glu100Gln	p.E100Q	ENST00000358208		100	Gag/Cag																																																																														
TOP1	7150	MSKCC	GRCh37	20	39725870	39725870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	40	290	0	ENST00000361337.2:c.741G>A	p.Met247Ile	p.M247I	ENST00000361337	NM_003286.2	247	atG/atA																																																																														
RB1	5925	MSKCC	GRCh37	13	48923133	48923133	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	245	363	0	ENST00000267163.4:c.581del	p.Ser194PhefsTer7	p.S194Ffs*7	ENST00000267163	NM_000321.2	194	tCt/tt																																																																														
NBN	4683	MSKCC	GRCh37	8	90971009	90971010	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	130	391	0	ENST00000265433.3:c.1067_1068delinsTT	p.Ala356Val	p.A356V	ENST00000265433	NM_002485.4	356	gCC/gTT																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2636819	2636820	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	80	412	0	ENST00000342085.4:c.1268_1269delinsTT	p.Ser423Phe	p.S423F	ENST00000342085	NM_002613.4	423	tCC/tTT																																																																														
TET1	80312	MSKCC	GRCh37	10	70451031	70451032	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0000951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	82	420	0	ENST00000373644.4:c.5871_5872delinsAA	p.Met1957_Glu1958delinsIleLys	p.M1957_E1958delinsIK	ENST00000373644	NM_030625.2	1957	atGGaa/atAAaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1047	158	395	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	38	179	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	258	401	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	75	213	0				ENST00000310581	NM_198253.2																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139411726	139411726	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0001008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	210	416	0	ENST00000277541.6:c.1553C>T	p.Thr518Met	p.T518M	ENST00000277541	NM_017617.3	518	aCg/aTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	184	328	3	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732963	30732963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	292	315	0	ENST00000359013.4:c.1651G>C	p.Glu551Gln	p.E551Q	ENST00000359013	NM_001024847.2	551	Gag/Cag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162705	47162705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			969	237	519	0	ENST00000409792.3:c.3421C>G	p.Pro1141Ala	p.P1141A	ENST00000409792	NM_014159.6	1141	Ccg/Gcg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71015040	71015040	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0001008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	138	278	0	ENST00000318789.4:c.1889+1G>A		p.X630_splice	ENST00000318789	NM_032682.5	630																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539330	187539330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	167	436	0	ENST00000441802.2:c.8410G>A	p.Asp2804Asn	p.D2804N	ENST00000441802	NM_005245.3	2804	Gac/Aac																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39618752	39618752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			984	97	339	0	ENST00000262039.4:c.1976G>A	p.Arg659Gln	p.R659Q	ENST00000262039	NM_002647.2	659	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023629	27023642	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGCCGGCTCCA	GGCTGCCGGCTCCA	-			P-0001008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	300	336	0	ENST00000324856.7:c.735_748delGGCTGCCGGCTCCA	p.Gly248SerfsTer147	p.G248Sfs*147	ENST00000324856	NM_006015.4	245	gcGGCTGCCGGCTCCAag/gcag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	76	404	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			58	50	150	0				ENST00000310581	NM_198253.2																																																																																
RBM10	8241	MSKCC	GRCh37	X	47045667	47045667	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	93	273	0	ENST00000329236.7:c.2314C>T	p.Gln772Ter	p.Q772*	ENST00000329236	NM_001204466.1	772	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	34	147	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0001041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			769	176	618	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	114	178	0				ENST00000310581	NM_198253.2																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178095740	178095740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			888	177	424	0	ENST00000397062.3:c.1591C>G	p.His531Asp	p.H531D	ENST00000397062	NM_006164.4	531	Cat/Gat																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793310	242793310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	130	387	0	ENST00000334409.5:c.767G>A	p.Gly256Glu	p.G256E	ENST00000334409	NM_005018.2	256	gGa/gAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163667	47163667	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	109	427	0	ENST00000409792.3:c.2459C>G	p.Ser820Cys	p.S820C	ENST00000409792	NM_014159.6	820	tCt/tGt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138375113	138375113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	76	268	0	ENST00000289153.2:c.2946C>A	p.Phe982Leu	p.F982L	ENST00000289153	NM_006219.2	982	ttC/ttA																																																																														
ATR	545	MSKCC	GRCh37	3	142176552	142176552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			848	211	509	1	ENST00000350721.4:c.7549C>G	p.His2517Asp	p.H2517D	ENST00000350721	NM_001184.3	2517	Cat/Gat																																																																														
APC	324	MSKCC	GRCh37	5	112174228	112174228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			748	153	517	2	ENST00000257430.4:c.2937G>A	p.Met979Ile	p.M979I	ENST00000257430	NM_000038.5	979	atG/atA																																																																														
APC	324	MSKCC	GRCh37	5	112174691	112174691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	150	400	0	ENST00000257430.4:c.3400G>A	p.Asp1134Asn	p.D1134N	ENST00000257430	NM_000038.5	1134	Gac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112174700	112174700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	150	392	0	ENST00000257430.4:c.3409G>A	p.Asp1137Asn	p.D1137N	ENST00000257430	NM_000038.5	1137	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169174	32169174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			675	97	403	0	ENST00000375023.3:c.3859G>A	p.Glu1287Lys	p.E1287K	ENST00000375023	NM_004557.3	1287	Gaa/Aaa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13978843	13978843	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			595	193	436	1	ENST00000405192.2:c.264C>G	p.Ile88Met	p.I88M	ENST00000405192	NM_001163147.1	88	atC/atG																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362470	118362470	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	119	466	0	ENST00000534358.1:c.4831G>T	p.Glu1611Ter	p.E1611*	ENST00000534358	NM_005933.3	1611	Gag/Tag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500332	99500332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	265	435	0	ENST00000268035.6:c.3765G>A	p.Met1255Ile	p.M1255I	ENST00000268035	NM_000875.3	1255	atG/atA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032271	10032271	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	131	260	0	ENST00000330684.3:c.552C>G	p.Ile184Met	p.I184M	ENST00000330684	NM_001134407.1	184	atC/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577085	+	missense_variant	Missense_Mutation	ONP	CCTC	CCTC	TCTT			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	426	496	0	ENST00000269305.4:c.853_856delinsAAGA	p.Glu285_Glu286delinsLysLys	p.E285_E286delinsKK	ENST00000269305	NM_001126112.2	285	GAGGaa/AAGAaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735497	40735497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			877	89	415	0	ENST00000373198.4:c.3376G>A	p.Glu1126Lys	p.E1126K	ENST00000373198	NM_133170.3	1126	Gaa/Aaa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933127	39933127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	268	283	0	ENST00000378444.4:c.1472G>A	p.Gly491Glu	p.G491E	ENST00000378444	NM_001123385.1	491	gGa/gAa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225346624	225346625	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	98	467	0	ENST00000264414.4:c.2013_2014del	p.Arg671SerfsTer12	p.R671Sfs*12	ENST00000264414	NM_003590.4	671	agAGtc/agtc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922758	44922774	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGCAGCCACAGCTT	GCCAGCAGCCACAGCTT	-			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	152	264	0	ENST00000377967.4:c.1621_1637del	p.Gln541SerfsTer6	p.Q541Sfs*6	ENST00000377967	NM_021140.2	540	gGCCAGCAGCCACAGCTT/g																																																																														
APC	324	MSKCC	GRCh37	5	112174757	112174762	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGAG	GAAGAG	AAAAA			P-0001074-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	95	399	0	ENST00000257430.4:c.3466_3471delinsAAAAA	p.Glu1156LysfsTer9	p.E1156Kfs*9	ENST00000257430	NM_000038.5	1156	GAAGAG/AAAAA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			49	16	92	0				ENST00000310581	NM_198253.2																																																																																
CASP8	841	MSKCC	GRCh37	2	202141586	202141586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			485	47	269	0	ENST00000358485.4:c.874C>T	p.Arg292Trp	p.R292W	ENST00000358485	NM_001080125.1	292	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539564	187539564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	65	253	0	ENST00000441802.2:c.8176C>T	p.Arg2726Ter	p.R2726*	ENST00000441802	NM_005245.3	2726	Cga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	15	84	0	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11300489	11300489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	29	340	0	ENST00000361445.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000361445	NM_004958.3	553	Cgc/Tgc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47600674	47600674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	95	436	0	ENST00000263735.4:c.149C>T	p.Ser50Leu	p.S50L	ENST00000263735	NM_002354.2	50	tCa/tTa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010443	48010443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	25	163	0	ENST00000234420.5:c.71C>T	p.Ser24Leu	p.S24L	ENST00000234420	NM_000179.2	24	tCg/tTg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61726020	61726020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			589	41	280	0	ENST00000401558.2:c.619C>G	p.Gln207Glu	p.Q207E	ENST00000401558	NM_003400.3	207	Caa/Gaa																																																																														
CASP8	841	MSKCC	GRCh37	2	202149817	202149817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	84	310	0	ENST00000358485.4:c.1258C>T	p.Gln420Ter	p.Q420*	ENST00000358485	NM_001080125.1	420	Cag/Tag																																																																														
KIT	3815	MSKCC	GRCh37	4	55561686	55561686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	29	170	0	ENST00000288135.5:c.76C>G	p.Gln26Glu	p.Q26E	ENST00000288135	NM_000222.2	26	Caa/Gaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535344	187535344	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	37	349	0	ENST00000441802.2:c.9229+1G>C		p.X3077_splice	ENST00000441802	NM_005245.3	3077																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628235	187628235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	36	230	0	ENST00000441802.2:c.2747C>T	p.Ser916Leu	p.S916L	ENST00000441802	NM_005245.3	916	tCa/tTa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750550	57750550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	39	305	0	ENST00000274289.3:c.1918G>A	p.Glu640Lys	p.E640K	ENST00000274289	NM_006622.3	640	Gaa/Aaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176710860	176710860	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	41	371	0	ENST00000439151.2:c.6082G>T	p.Glu2028Ter	p.E2028*	ENST00000439151	NM_022455.4	2028	Gaa/Taa																																																																														
MET	4233	MSKCC	GRCh37	7	116339981	116339981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	53	253	0	ENST00000397752.3:c.843C>G	p.Phe281Leu	p.F281L	ENST00000397752	NM_000245.2	281	ttC/ttG																																																																														
ABL1	25	MSKCC	GRCh37	9	133750394	133750394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	33	390	0	ENST00000318560.5:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000318560	NM_005157.4	409	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139410452	139410452	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	38	386	0	ENST00000277541.6:c.1650C>G	p.Tyr550Ter	p.Y550*	ENST00000277541	NM_017617.3	550	taC/taG																																																																														
SUFU	51684	MSKCC	GRCh37	10	104357042	104357042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	26	163	0	ENST00000369902.3:c.902C>T	p.Ser301Phe	p.S301F	ENST00000369902	NM_016169.3	301	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445656	49445656	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	67	329	0	ENST00000301067.7:c.1810G>T	p.Glu604Ter	p.E604*	ENST00000301067	NM_003482.3	604	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445869	49445869	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	70	238	0	ENST00000301067.7:c.1597G>C	p.Glu533Gln	p.E533Q	ENST00000301067	NM_003482.3	533	Gag/Cag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913235	32913235	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	30	235	0	ENST00000380152.3:c.4743G>C	p.Glu1581Asp	p.E1581D	ENST00000380152		1581	gaG/gaC																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15995188	15995188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	85	395	0	ENST00000268712.3:c.3005G>C	p.Arg1002Thr	p.R1002T	ENST00000268712	NM_006311.3	1002	aGa/aCa																																																																														
ATRX	546	MSKCC	GRCh37	X	76920202	76920202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	35	604	0	ENST00000373344.5:c.3875C>T	p.Ser1292Leu	p.S1292L	ENST00000373344	NM_000489.3	1292	tCa/tTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971027	21971028	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	107	116	0	ENST00000304494.5:c.330_331delinsAA	p.Trp110_Gly111delinsTer	p.W110_G111delins*	ENST00000304494	NM_000077.4	110	tgGGgc/tgAAgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971027	21971028	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	107	116	0	ENST00000304494.5:c.330_331delinsAA	p.Trp110_Gly111delinsTer	p.W110_G111delins*	ENST00000304494	NM_000077.4	110	tgGGgc/tgAAgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971027	21971028	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	107	116	0	ENST00000304494.5:c.330_331delinsAA	p.Trp110_Gly111delinsTer	p.W110_G111delins*	ENST00000304494	NM_000077.4	110	tgGGgc/tgAAgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577555	7577556	+	missense_variant	Missense_Mutation	DNP	GC	GC	CG			P-0001082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	66	218	0	ENST00000269305.4:c.725_726delinsCG	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGC/tCG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001099-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	334	286	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001099-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	319	463	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920503	134920503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001099-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	99	455	0	ENST00000398015.3:c.2318C>T	p.Thr773Ile	p.T773I	ENST00000398015	NM_004441.4	773	aCc/aTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971084	21971084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001099-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	68	145	0	ENST00000304494.5:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000304494	NM_000077.4	92	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971084	21971084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001099-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	68	145	0	ENST00000304494.5:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000304494	NM_000077.4	92	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971084	21971084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001099-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	68	145	0	ENST00000304494.5:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000304494	NM_000077.4	92	Gac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001100-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			45	11	84	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001100-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	116	114	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CD274	29126	MSKCC	GRCh37	9	5462893	5462893	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001100-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	151	322	0	ENST00000381577.3:c.454G>T	p.Glu152Ter	p.E152*	ENST00000381577	NM_014143.3	152	Gaa/Taa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929157	44929157	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001100-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	66	271	0	ENST00000377967.4:c.2257C>T	p.Gln753Ter	p.Q753*	ENST00000377967	NM_021140.2	753	Cag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70338683	70338683	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001100-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	51	331	0	ENST00000374080.3:c.79C>G	p.Gln27Glu	p.Q27E	ENST00000374080		27	Cag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577468	7577505	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGT	CCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGT	-			P-0001100-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			90	20	204	0	ENST00000269305.4:c.776_782+31del		p.X259_splice	ENST00000269305	NM_001126112.2	259																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001135-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			157	21	112	0				ENST00000310581	NM_198253.2																																																																																
FUBP1	8880	MSKCC	GRCh37	1	78429945	78429945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001135-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			1037	67	554	0	ENST00000370768.2:c.934A>G	p.Lys312Glu	p.K312E	ENST00000370768	NM_003902.3	312	Aag/Gag																																																																														
RB1	5925	MSKCC	GRCh37	13	49030343	49030343	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001135-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			705	96	336	0	ENST00000267163.4:c.1818T>A	p.Tyr606Ter	p.Y606*	ENST00000267163	NM_000321.2	606	taT/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0001135-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			479	78	340	0	ENST00000269305.4:c.374C>G	p.Thr125Arg	p.T125R	ENST00000269305	NM_001126112.2	125	aCg/aGg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872195	45872195	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001135-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			668	78	463	0	ENST00000391945.4:c.239T>C	p.Ile80Thr	p.I80T	ENST00000391945	NM_000400.3	80	aTt/aCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	120	259	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	165	251	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741661	17741661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	243	304	0	ENST00000250003.3:c.332G>T	p.Arg111Leu	p.R111L	ENST00000250003	NM_002478.4	111	cGc/cTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191212	2191212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	148	480	2	ENST00000398665.3:c.466G>T	p.Asp156Tyr	p.D156Y	ENST00000398665	NM_032482.2	156	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971166	21971167	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	87	84	0	ENST00000304494.5:c.191dup	p.Leu65AlafsTer55	p.L65Afs*55	ENST00000304494	NM_000077.4	64	ctg/ctTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971166	21971167	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	87	84	0	ENST00000304494.5:c.191dup	p.Leu65AlafsTer55	p.L65Afs*55	ENST00000304494	NM_000077.4	64	ctg/ctTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971166	21971167	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	87	84	0	ENST00000304494.5:c.191dup	p.Leu65AlafsTer55	p.L65Afs*55	ENST00000304494	NM_000077.4	64	ctg/ctTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			76	88	270	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0001188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	139	706	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	70	263	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	29	172	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	17	126	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237746	16237746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			529	74	413	0	ENST00000375759.3:c.1193G>A	p.Gly398Glu	p.G398E	ENST00000375759	NM_015001.2	398	gGa/gAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65309899	65309899	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	57	287	0	ENST00000342505.4:c.2252-1G>C		p.X751_splice	ENST00000342505	NM_002227.2	751																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120468088	120468088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	124	383	1	ENST00000256646.2:c.4351G>A	p.Asp1451Asn	p.D1451N	ENST00000256646	NM_024408.3	1451	Gat/Aat																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870314	155870314	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			696	160	719	0	ENST00000368323.3:c.525C>G	p.Phe175Leu	p.F175L	ENST00000368323	NM_006912.5	175	ttC/ttG																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725505	162725505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	216	476	2	ENST00000367921.3:c.617G>C	p.Gly206Ala	p.G206A	ENST00000367921	NM_006182.2	206	gGa/gCa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090083	37090083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	98	461	0	ENST00000231790.2:c.1972C>T	p.Leu658Phe	p.L658F	ENST00000231790	NM_000249.3	658	Ctt/Ttt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247436	71247436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	112	512	0	ENST00000318789.4:c.97C>T	p.Arg33Trp	p.R33W	ENST00000318789	NM_032682.5	33	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916683	178916683	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	194	354	0	ENST00000263967.3:c.70T>A	p.Cys24Ser	p.C24S	ENST00000263967	NM_006218.2	24	Tgt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916810	178916810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			711	177	529	0	ENST00000263967.3:c.197C>T	p.Ser66Phe	p.S66F	ENST00000263967	NM_006218.2	66	tCt/tTt																																																																														
TP63	8626	MSKCC	GRCh37	3	189526119	189526119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	154	467	1	ENST00000264731.3:c.383C>T	p.Ser128Phe	p.S128F	ENST00000264731	NM_003722.4	128	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189604319	189604319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	160	452	0	ENST00000264731.3:c.1486C>T	p.Pro496Ser	p.P496S	ENST00000264731	NM_003722.4	496	Cct/Tct																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143114276	143114276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			560	170	578	0	ENST00000262992.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000262992	NM_001101669.1	382	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187516921	187516921	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	135	591	0	ENST00000441802.2:c.13060C>T	p.Gln4354Ter	p.Q4354*	ENST00000441802	NM_005245.3	4354	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521370	187521370	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	142	512	0	ENST00000441802.2:c.11785C>T	p.Gln3929Ter	p.Q3929*	ENST00000441802	NM_005245.3	3929	Caa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1294703	1294703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	27	71	0	ENST00000310581.5:c.298G>A	p.Gly100Ser	p.G100S	ENST00000310581	NM_198253.2	100	Ggc/Agc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564671	86564671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	145	529	0	ENST00000274376.6:c.403C>T	p.Pro135Ser	p.P135S	ENST00000274376	NM_002890.2	135	Ccc/Tcc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056580	26056580	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	104	198	0	ENST00000343677.2:c.77A>T	p.Lys26Ile	p.K26I	ENST00000343677	NM_005319.3	26	aAa/aTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680770	30680770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	98	565	1	ENST00000376406.3:c.949C>T	p.His317Tyr	p.H317Y	ENST00000376406	NM_014641.2	317	Cat/Tat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117630048	117630048	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			548	142	475	0	ENST00000368508.3:c.6478C>T	p.Gln2160Ter	p.Q2160*	ENST00000368508	NM_002944.2	2160	Cag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953089	2953089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	89	358	0	ENST00000396946.4:c.2851G>A	p.Glu951Lys	p.E951K	ENST00000396946	NM_032415.4	951	Gag/Aag																																																																														
SYK	6850	MSKCC	GRCh37	9	93639995	93639995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	104	250	0	ENST00000375746.1:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000375746	NM_001174167.1	442	Gag/Aag																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250088	110250088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			461	103	435	0	ENST00000374672.4:c.587C>G	p.Ser196Trp	p.S196W	ENST00000374672	NM_004235.4	196	tCg/tGg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396827	139396827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	95	460	0	ENST00000277541.6:c.5281C>T	p.Arg1761Trp	p.R1761W	ENST00000277541	NM_017617.3	1761	Cgg/Tgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399826	139399826	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			485	108	479	0	ENST00000277541.6:c.4522C>T	p.Gln1508Ter	p.Q1508*	ENST00000277541	NM_017617.3	1508	Cag/Tag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239426	123239426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	109	291	0	ENST00000358487.5:c.2411C>T	p.Pro804Leu	p.P804L	ENST00000358487	NM_000141.4	804	cCt/cTt																																																																														
HRAS	3265	MSKCC	GRCh37	11	534232	534232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	113	637	0	ENST00000311189.7:c.91G>A	p.Glu31Lys	p.E31K	ENST00000311189		31	Gaa/Aaa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154851	2154851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	103	625	0	ENST00000434045.2:c.370G>A	p.Glu124Lys	p.E124K	ENST00000434045	NM_001127598.1	124	Gag/Aag																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742918	17742918	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	44	372	0	ENST00000250003.3:c.826T>G	p.Ser276Ala	p.S276A	ENST00000250003	NM_002478.4	276	Tct/Gct																																																																														
ATM	472	MSKCC	GRCh37	11	108196825	108196825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	117	333	0	ENST00000278616.4:c.6848C>T	p.Ser2283Leu	p.S2283L	ENST00000278616	NM_000051.3	2283	tCa/tTa																																																																														
CBL	867	MSKCC	GRCh37	11	119142491	119142491	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			614	138	454	0	ENST00000264033.4:c.490G>C	p.Glu164Gln	p.E164Q	ENST00000264033	NM_005188.3	164	Gaa/Caa																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992208	11992208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			568	579	390	3	ENST00000396373.4:c.298G>A	p.Glu100Lys	p.E100K	ENST00000396373	NM_001987.4	100	Gag/Aag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552630	18552630	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200787716		P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			814	483	548	0	ENST00000266497.5:c.2041C>T	p.Arg681Cys	p.R681C	ENST00000266497		681	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435033	49435033	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	60	179	0	ENST00000301067.7:c.6520C>T	p.Gln2174Ter	p.Q2174*	ENST00000301067	NM_003482.3	2174	Cag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133218844	133218844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	114	507	0	ENST00000320574.5:c.5092G>A	p.Glu1698Lys	p.E1698K	ENST00000320574	NM_006231.2	1698	Gag/Aag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937326	32937326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	106	322	0	ENST00000380152.3:c.7987G>C	p.Glu2663Gln	p.E2663Q	ENST00000380152		2663	Gaa/Caa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518076	103518076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	79	318	0	ENST00000355739.4:c.2014G>A	p.Glu672Lys	p.E672K	ENST00000355739	NM_000123.3	672	Gaa/Aaa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570201	95570201	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			548	133	460	0	ENST00000343455.3:c.3532C>G	p.Leu1178Val	p.L1178V	ENST00000343455	NM_177438.2	1178	Ctt/Gtt																																																																														
BLM	641	MSKCC	GRCh37	15	91293262	91293262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	43	177	0	ENST00000355112.3:c.764G>A	p.Ser255Asn	p.S255N	ENST00000355112	NM_000057.2	255	aGt/aAt																																																																														
CDH1	999	MSKCC	GRCh37	16	68844238	68844238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	82	319	0	ENST00000261769.5:c.826C>T	p.Leu276Phe	p.L276F	ENST00000261769	NM_004360.3	276	Ctt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577070	7577070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	110	595	0	ENST00000269305.4:c.868C>T	p.Arg290Cys	p.R290C	ENST00000269305	NM_001126112.2	290	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	127	608	0	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39706221	39706221	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			627	179	413	0	ENST00000361337.2:c.280-1G>A		p.X94_splice	ENST00000361337	NM_003286.2	94																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42866378	42866378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	57	307	0	ENST00000398585.3:c.254C>T	p.Pro85Leu	p.P85L	ENST00000398585	NM_001135099.1	85	cCc/cTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70341252	70341252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	170	290	0	ENST00000374080.3:c.811G>A	p.Glu271Lys	p.E271K	ENST00000374080		271	Gaa/Aaa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30321638	30321639	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	149	529	0	ENST00000322652.5:c.1493_1494delinsTT	p.Ser498Phe	p.S498F	ENST00000322652	NM_015355.2	498	tCC/tTT																																																																														
KDR	3791	MSKCC	GRCh37	4	55946115	55946116	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	99	451	0	ENST00000263923.4:c.4063_4064delinsTT	p.Pro1355Phe	p.P1355F	ENST00000263923	NM_002253.2	1355	CCt/TTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442967	49442968	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	83	452	0	ENST00000301067.7:c.3940_3941delinsTT	p.Pro1314Phe	p.P1314F	ENST00000301067	NM_003482.3	1314	CCt/TTt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418242	139418243	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	113	594	0	ENST00000277541.6:c.329_330delinsTT	p.Pro110Leu	p.P110L	ENST00000277541	NM_017617.3	110	cCC/cTT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178942532	178942533	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	207	299	2	ENST00000263967.3:c.2339_2340delinsAA	p.Trp780Ter	p.W780*	ENST00000263967	NM_006218.2	780	tGG/tAA																																																																														
ATR	545	MSKCC	GRCh37	3	142215854	142215855	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0001198-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	150	268	0	ENST00000350721.4:c.5738_5738+1delinsAA		p.X1913_splice	ENST00000350721	NM_001184.3	1913																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001223-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	42	245	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0001223-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	43	148	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255467	16255467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001223-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			612	102	462	0	ENST00000375759.3:c.2732C>T	p.Ser911Phe	p.S911F	ENST00000375759	NM_015001.2	911	tCt/tTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256393	16256393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001223-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			574	107	479	0	ENST00000375759.3:c.3658G>A	p.Asp1220Asn	p.D1220N	ENST00000375759	NM_015001.2	1220	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437746	49437746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001223-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			873	162	771	0	ENST00000301067.7:c.5224G>C	p.Glu1742Gln	p.E1742Q	ENST00000301067	NM_003482.3	1742	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437758	49437758	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001223-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	130	661	0	ENST00000301067.7:c.5212G>T	p.Glu1738Ter	p.E1738*	ENST00000301067	NM_003482.3	1738	Gag/Tag																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78820291	78820291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001223-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	135	548	0	ENST00000306801.3:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000306801	NM_020761.2	411	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249012	55249013	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGTTT			P-0001223-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	149	493	0	ENST00000275493.2:c.2310_2311insGGGTTT	p.Asp770_Asn771insGlyPhe	p.D770_N771insGF	ENST00000275493	NM_005228.3	770	-/GGGTTT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001239-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	95	142	0				ENST00000310581	NM_198253.2																																																																																
MTOR	2475	MSKCC	GRCh37	1	11290984	11290984	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	184	359	0	ENST00000361445.4:c.2777C>T	p.Ser926Phe	p.S926F	ENST00000361445	NM_004958.3	926	tCc/tTc																																																																														
SDHB	6390	MSKCC	GRCh37	1	17349134	17349134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	152	335	0	ENST00000375499.3:c.734C>T	p.Thr245Ile	p.T245I	ENST00000375499	NM_003000.2	245	aCc/aTc																																																																														
MPL	4352	MSKCC	GRCh37	1	43812538	43812538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	216	355	0	ENST00000372470.3:c.1241C>T	p.Ser414Leu	p.S414L	ENST00000372470	NM_005373.2	414	tCg/tTg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332875	65332875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	164	258	0	ENST00000342505.4:c.664C>T	p.Pro222Ser	p.P222S	ENST00000342505	NM_002227.2	222	Cca/Tca																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430793	78430793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	308	498	0	ENST00000370768.2:c.596T>C	p.Leu199Ser	p.L199S	ENST00000370768	NM_003902.3	199	tTa/tCa																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699495	117699495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	199	285	0	ENST00000369458.3:c.146G>A	p.Gly49Glu	p.G49E	ENST00000369458	NM_024626.3	49	gGg/gAg																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165825	118165825	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	133	238	0	ENST00000369448.3:c.335T>C	p.Val112Ala	p.V112A	ENST00000369448	NM_017709.3	112	gTt/gCt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651156	206651156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	96	331	0	ENST00000367120.3:c.766C>T	p.Pro256Ser	p.P256S	ENST00000367120	NM_014002.3	256	Ccc/Tcc																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907692	111907692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	226	464	0	ENST00000393256.3:c.466G>A	p.Gly156Arg	p.G156R	ENST00000393256	NM_006538.4	156	Gga/Aga																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128030456	128030457	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	193	694	0	ENST00000285398.2:c.1811_1812delinsTT	p.Thr604Ile	p.T604I	ENST00000285398	NM_000122.1	604	aCC/aTT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295678	212295678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	259	518	0	ENST00000342788.4:c.2635G>A	p.Gly879Arg	p.G879R	ENST00000342788	NM_005235.2	879	Gga/Aga																																																																														
BARD1	580	MSKCC	GRCh37	2	215645525	215645525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	308	465	0	ENST00000260947.4:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000260947	NM_000465.2	358	cCa/cTa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37042536	37042536	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	218	411	0	ENST00000231790.2:c.298C>T	p.Arg100Ter	p.R100*	ENST00000231790	NM_000249.3	100	Cga/Tga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437605	52437605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	130	281	0	ENST00000460680.1:c.1556C>T	p.Pro519Leu	p.P519L	ENST00000460680	NM_004656.3	519	cCc/cTc																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72891509	72891509	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	272	466	1	ENST00000325599.8:c.253T>A	p.Phe85Ile	p.F85I	ENST00000325599	NM_018130.2	85	Ttt/Att																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851626	134851627	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	134	337	2	ENST00000398015.3:c.1032_1033delinsGT	p.Pro345Ser	p.P345S	ENST00000398015	NM_004441.4	344	ccTCca/ccGTca																																																																														
TERT	7015	MSKCC	GRCh37	5	1279500	1279500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			682	91	365	0	ENST00000310581.5:c.2036C>T	p.Ser679Phe	p.S679F	ENST00000310581	NM_198253.2	679	tCt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	328	129	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295253	1295253	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	331	147	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35871199	35871199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	210	369	2	ENST00000303115.3:c.421G>A	p.Glu141Lys	p.E141K	ENST00000303115	NM_002185.3	141	Gaa/Aaa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35875645	35875645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201449880		P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	210	393	1	ENST00000303115.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000303115	NM_002185.3	278	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112177630	112177630	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	179	244	0	ENST00000257430.4:c.6339T>A	p.Ser2113Arg	p.S2113R	ENST00000257430	NM_000038.5	2113	agT/agA																																																																														
APC	324	MSKCC	GRCh37	5	112177800	112177800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	154	270	0	ENST00000257430.4:c.6509C>T	p.Pro2170Leu	p.P2170L	ENST00000257430	NM_000038.5	2170	cCa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112178690	112178690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	267	413	0	ENST00000257430.4:c.7399C>T	p.Pro2467Ser	p.P2467S	ENST00000257430	NM_000038.5	2467	Cca/Tca																																																																														
NPM1	4869	MSKCC	GRCh37	5	170814993	170814993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	143	291	0	ENST00000296930.5:c.41C>T	p.Pro14Leu	p.P14L	ENST00000296930	NM_002520.6	14	cCc/cTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522662	176522662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	136	580	0	ENST00000292408.4:c.1759C>T	p.Pro587Ser	p.P587S	ENST00000292408	NM_213647.1	587	Cca/Tca																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671765	30671765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	103	298	0	ENST00000376406.3:c.5195C>A	p.Ser1732Tyr	p.S1732Y	ENST00000376406	NM_014641.2	1732	tCc/tAc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553761	106553761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	240	332	0	ENST00000369096.4:c.1726G>A	p.Glu576Lys	p.E576K	ENST00000369096	NM_001198.3	576	Gaa/Aaa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555026	106555026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	178	244	0	ENST00000369096.4:c.2143G>A	p.Ala715Thr	p.A715T	ENST00000369096	NM_001198.3	715	Gcg/Acg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677834	117677834	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	195	379	0	ENST00000368508.3:c.4099G>C	p.Gly1367Arg	p.G1367R	ENST00000368508	NM_002944.2	1367	Ggc/Cgc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709162	117709162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	171	263	0	ENST00000368508.3:c.1795G>A	p.Glu599Lys	p.E599K	ENST00000368508	NM_002944.2	599	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117737431	117737431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	287	393	0	ENST00000368508.3:c.218C>T	p.Ala73Val	p.A73V	ENST00000368508	NM_002944.2	73	gCt/gTt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522148	157522148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	97	229	0	ENST00000346085.5:c.4420C>T	p.Pro1474Ser	p.P1474S	ENST00000346085	NM_020732.3	1474	Ccc/Tcc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527985	157527985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	109	188	0	ENST00000346085.5:c.5710C>T	p.Pro1904Ser	p.P1904S	ENST00000346085	NM_020732.3	1904	Ccc/Tcc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026913	6026913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			34	50	78	0	ENST00000265849.7:c.1483G>A	p.Gly495Arg	p.G495R	ENST00000265849	NM_000535.5	495	Ggg/Agg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467858	50467858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	100	265	0	ENST00000331340.3:c.1093G>A	p.Ala365Thr	p.A365T	ENST00000331340	NM_006060.4	365	Gcc/Acc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515160	106515160	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	524	393	1	ENST00000359195.3:c.2303A>G	p.Lys768Arg	p.K768R	ENST00000359195	NM_002649.2	768	aAa/aGa																																																																														
SMO	6608	MSKCC	GRCh37	7	128843285	128843285	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	155	459	0	ENST00000249373.3:c.392T>G	p.Met131Arg	p.M131R	ENST00000249373	NM_005631.4	131	aTg/aGg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845367	151845367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	294	277	0	ENST00000262189.6:c.13645C>T	p.Arg4549Cys	p.R4549C	ENST00000262189	NM_170606.2	4549	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317942	8317942	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	161	234	0	ENST00000356435.5:c.5671G>A	p.Asp1891Asn	p.D1891N	ENST00000356435		1891	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376626	8376626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	161	287	0	ENST00000356435.5:c.4487G>A	p.Arg1496Gln	p.R1496Q	ENST00000356435		1496	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504308	8504308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	174	305	0	ENST00000356435.5:c.1775G>A	p.Gly592Asp	p.G592D	ENST00000356435		592	gGc/gAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518055	8518055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	201	489	0	ENST00000356435.5:c.1336G>A	p.Gly446Arg	p.G446R	ENST00000356435		446	Gga/Aga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			43	132	174	0	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971121	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			43	132	174	0	ENST00000304494.5:c.237_238delinsTT	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	79	acCCga/acTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971121	21971121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	132	174	0	ENST00000361570.3:c.403C>T	p.Pro135Ser	p.P135S	ENST00000361570	NM_058195.3	135	Ccg/Tcg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430683	80430683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	108	234	0	ENST00000286548.4:c.325C>T	p.His109Tyr	p.H109Y	ENST00000286548	NM_002072.3	109	Cat/Tat																																																																														
ABL1	25	MSKCC	GRCh37	9	133748264	133748264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	154	375	0	ENST00000318560.5:c.925C>T	p.Pro309Ser	p.P309S	ENST00000318560	NM_005157.4	309	Ccc/Tcc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	442748	442748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	229	400	0	ENST00000399788.2:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000399788	NM_001042603.1	520	Gag/Aag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	465598	465598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	266	584	2	ENST00000399788.2:c.778G>T	p.Asp260Tyr	p.D260Y	ENST00000399788	NM_001042603.1	260	Gat/Tat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534770	18534770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	221	304	0	ENST00000266497.5:c.1828C>T	p.Pro610Ser	p.P610S	ENST00000266497		610	Cca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420091	49420091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	257	446	0	ENST00000301067.7:c.15658C>T	p.Arg5220Cys	p.R5220C	ENST00000301067	NM_003482.3	5220	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433916	49433916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	81	242	0	ENST00000301067.7:c.7637C>T	p.Ser2546Phe	p.S2546F	ENST00000301067	NM_003482.3	2546	tCc/tTc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888286	112888286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	123	290	0	ENST00000351677.2:c.302C>T	p.Pro101Leu	p.P101L	ENST00000351677	NM_002834.3	101	cCt/cTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28885829	28885829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	107	468	0	ENST00000282397.4:c.3533G>A	p.Gly1178Glu	p.G1178E	ENST00000282397	NM_002019.4	1178	gGa/gAa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	176	357	0	ENST00000307102.5:c.371C>T	p.Pro124Leu	p.P124L	ENST00000307102	NM_002755.3	124	cCg/cTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690635	88690635	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	171	266	0	ENST00000360948.2:c.396-1G>A		p.X132_splice	ENST00000360948	NM_001012338.2	132																																																																															
TSC2	7249	MSKCC	GRCh37	16	2129160	2129160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	161	390	0	ENST00000219476.3:c.3094C>T	p.Arg1032Ter	p.R1032*	ENST00000219476	NM_000548.3	1032	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858259	9858259	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	196	486	0	ENST00000330684.3:c.3142A>G	p.Ser1048Gly	p.S1048G	ENST00000330684	NM_001134407.1	1048	Agc/Ggc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274043	10274043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	154	443	0	ENST00000330684.3:c.226C>G	p.Arg76Gly	p.R76G	ENST00000330684	NM_001134407.1	76	Cgc/Ggc																																																																														
CDH1	999	MSKCC	GRCh37	16	68857452	68857452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	115	345	0	ENST00000261769.5:c.2087G>A	p.Arg696Lys	p.R696K	ENST00000261769	NM_004360.3	696	aGg/aAg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17124889	17124889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	170	319	0	ENST00000285071.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000285071	NM_144997.5	278	cCg/cTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872150	37872150	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			274	157	431	0	ENST00000269571.5:c.1471C>T	p.Gln491Ter	p.Q491*	ENST00000269571		491	Caa/Taa																																																																														
RARA	5914	MSKCC	GRCh37	17	38510612	38510612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	219	525	0	ENST00000254066.5:c.866G>A	p.Gly289Glu	p.G289E	ENST00000254066	NM_000964.3	289	gGg/gAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223230	5223230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			52	88	279	0	ENST00000357368.4:c.2573C>T	p.Thr858Ile	p.T858I	ENST00000357368	NM_002850.3	858	aCc/aTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7143018	7143018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	158	393	0	ENST00000302850.5:c.2351C>T	p.Ser784Phe	p.S784F	ENST00000302850	NM_000208.2	784	tCc/tTc																																																																														
AKT2	208	MSKCC	GRCh37	19	40743950	40743950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	127	433	0	ENST00000392038.2:c.757C>T	p.Arg253Trp	p.R253W	ENST00000392038	NM_001626.4	253	Cgg/Tgg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546761	9546761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	117	271	0	ENST00000353224.5:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000353224	NM_177990.2	421	Gac/Aac																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31387101	31387101	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	195	361	2	ENST00000328111.2:c.1726C>T	p.Arg576Ter	p.R576*	ENST00000328111	NM_006892.3	576	Cga/Tga																																																																														
NF2	4771	MSKCC	GRCh37	22	30032794	30032794	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	420	337	0	ENST00000338641.4:c.169C>T	p.Arg57Ter	p.R57*	ENST00000338641	NM_000268.3	57	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040629	47040629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	178	421	0	ENST00000329236.7:c.1030G>A	p.Glu344Lys	p.E344K	ENST00000329236	NM_001204466.1	344	Gag/Aag																																																																														
ARAF	369	MSKCC	GRCh37	X	47426777	47426777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	137	380	0	ENST00000377045.4:c.1022C>A	p.Ser341Tyr	p.S341Y	ENST00000377045	NM_001654.4	341	tCc/tAc																																																																														
ARAF	369	MSKCC	GRCh37	X	47430329	47430329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	228	814	1	ENST00000377045.4:c.1604C>T	p.Ser535Phe	p.S535F	ENST00000377045	NM_001654.4	535	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29665145	29665145	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	208	244	0	ENST00000358273.4:c.6807del	p.Ile2270PhefsTer10	p.I2270Ffs*10	ENST00000358273	NM_001042492.2	2269	cgT/cg																																																																														
CIC	23152	MSKCC	GRCh37	19	42798452	42798452	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	168	337	0	ENST00000575354.2:c.4323del	p.Thr1442GlnfsTer12	p.T1442Qfs*12	ENST00000575354	NM_015125.3	1441	cgT/cg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	17	201	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	17	201	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	17	201	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	18	507	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag																																																																														
CDC73	79577	MSKCC	GRCh37	1	193117008	193117008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	31	472	0	ENST00000367435.3:c.741G>T	p.Lys247Asn	p.K247N	ENST00000367435	NM_024529.4	247	aaG/aaT																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178511	56178511	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	27	274	0	ENST00000399503.3:c.3484G>T	p.Glu1162Ter	p.E1162*	ENST00000399503	NM_005921.1	1162	Gaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534717	18534717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	48	262	0	ENST00000266497.5:c.1775C>G	p.Ser592Cys	p.S592C	ENST00000266497		592	tCt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398262	25398262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	52	413	0	ENST00000256078.4:c.57G>T	p.Leu19Phe	p.L19F	ENST00000256078	NM_033360.2	19	ttG/ttT																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347864	347864	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	50	705	0	ENST00000262320.3:c.1642G>T	p.Glu548Ter	p.E548*	ENST00000262320	NM_003502.3	548	Gag/Tag																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30322692	30322692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	26	309	0	ENST00000322652.5:c.1705G>A	p.Asp569Asn	p.D569N	ENST00000322652	NM_015355.2	569	Gat/Aat																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603041	48603041	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	19	153	0	ENST00000342988.3:c.1342C>T	p.Gln448Ter	p.Q448*	ENST00000342988	NM_005359.5	448	Cag/Tag																																																																														
INSR	3643	MSKCC	GRCh37	19	7117318	7117318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	26	504	0	ENST00000302850.5:c.3898G>A	p.Glu1300Lys	p.E1300K	ENST00000302850	NM_000208.2	1300	Gag/Aag																																																																														
AKT2	208	MSKCC	GRCh37	19	40745993	40745993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	21	335	0	ENST00000392038.2:c.598G>A	p.Glu200Lys	p.E200K	ENST00000392038	NM_001626.4	200	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106321	27106324	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-			P-0001255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	25	297	0	ENST00000324856.7:c.5932_5935del	p.Ala1978SerfsTer36	p.A1978Sfs*36	ENST00000324856	NM_006015.4	1978	GCCAag/ag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001261-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			38	158	95	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001261-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	267	375	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0001261-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	135	190	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001261-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	171	289	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404381	139404381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001261-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	114	352	0	ENST00000277541.6:c.2773G>A	p.Gly925Ser	p.G925S	ENST00000277541	NM_017617.3	925	Ggc/Agc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625330	69625330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001261-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	120	562	0	ENST00000334134.2:c.463G>T	p.Val155Leu	p.V155L	ENST00000334134	NM_005247.2	155	Gtg/Ttg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662297	67662297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001261-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	102	297	0	ENST00000264010.4:c.1543C>G	p.Arg515Gly	p.R515G	ENST00000264010	NM_006565.3	515	Cgc/Ggc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134252	11134252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001261-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			250	178	394	0	ENST00000344626.4:c.2918G>A	p.Arg973Gln	p.R973Q	ENST00000344626	NM_003072.3	973	cGg/cAg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868112	45868112	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001261-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	118	336	0	ENST00000391945.4:c.578T>C	p.Phe193Ser	p.F193S	ENST00000391945	NM_000400.3	193	tTc/tCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538211	187538212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCGCT			P-0001261-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	209	496	0	ENST00000441802.2:c.9018_9022dup	p.Ile3008LysfsTer3	p.I3008Kfs*3	ENST00000441802	NM_005245.3	3008	ata/aAGCGAta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	825	449	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	497	362	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	190	268	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317419	1317419	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	265	364	0				ENST00000381566																																																																																	
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	585	352	0	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9781895	9781895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	33	303	0	ENST00000377346.4:c.2032C>T	p.His678Tyr	p.H678Y	ENST00000377346	NM_005026.3	678	Cac/Tac																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163896	152163896	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	154	349	0	ENST00000206249.3:c.617A>C	p.Lys206Thr	p.K206T	ENST00000206249	NM_000125.3	206	aAg/aCg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078403	5078403	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	177	303	0	ENST00000381652.3:c.2090T>G	p.Leu697Arg	p.L697R	ENST00000381652	NM_004972.3	697	cTt/cGt																																																																														
RET	5979	MSKCC	GRCh37	10	43600478	43600478	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	84	389	0	ENST00000355710.3:c.704A>G	p.Glu235Gly	p.E235G	ENST00000355710	NM_020975.4	235	gAg/gGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400097	41400097	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			741	170	275	0	ENST00000373198.4:c.662A>C	p.Gln221Pro	p.Q221P	ENST00000373198	NM_133170.3	221	cAg/cCg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589609	67589611	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0001295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	79	225	0	ENST00000274335.5:c.1372_1374del	p.Glu458del	p.E458del	ENST00000274335		458	GAA/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			75	38	131	0				ENST00000310581	NM_198253.2																																																																																
SPEN	23013	MSKCC	GRCh37	1	16242766	16242766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	71	394	0	ENST00000375759.3:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000375759	NM_015001.2	463	Gaa/Aaa																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165965	118165965	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	51	223	0	ENST00000369448.3:c.475A>G	p.Asn159Asp	p.N159D	ENST00000369448	NM_017709.3	159	Aac/Gac																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098974	178098974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	92	281	0	ENST00000397062.3:c.71G>C	p.Trp24Ser	p.W24S	ENST00000397062	NM_006164.4	24	tGg/tCg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	90	270	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871040	12871040	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	64	253	0	ENST00000228872.4:c.267C>G	p.Tyr89Ter	p.Y89*	ENST00000228872	NM_004064.3	89	taC/taG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739073	40739073	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	25	284	0	ENST00000373198.4:c.3211G>C	p.Asp1071His	p.D1071H	ENST00000373198	NM_133170.3	1071	Gac/Cac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	32	110	0				ENST00000310581	NM_198253.2																																																																																
MSH6	2956	MSKCC	GRCh37	2	48026035	48026035	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	43	287	0	ENST00000234420.5:c.913A>C	p.Thr305Pro	p.T305P	ENST00000234420	NM_000179.2	305	Act/Cct																																																																														
APC	324	MSKCC	GRCh37	5	112174558	112174558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			144	32	317	0	ENST00000257430.4:c.3267C>A	p.Phe1089Leu	p.F1089L	ENST00000257430	NM_000038.5	1089	ttC/ttA																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721165	176721165	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	28	207	0	ENST00000439151.2:c.6796A>T	p.Lys2266Ter	p.K2266*	ENST00000439151	NM_022455.4	2266	Aaa/Taa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652323	36652323	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0001324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	88	183	0	ENST00000244741.5:c.445G>A	p.Asp149Asn	p.D149N	ENST00000244741	NM_000389.4	149	Gat/Aat																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630409	90630409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	89	327	0	ENST00000330062.3:c.902C>T	p.Ser301Leu	p.S301L	ENST00000330062	NM_002168.2	301	tCg/tTg																																																																														
BTK	695	MSKCC	GRCh37	X	100611212	100611212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			76	124	155	0	ENST00000308731.7:c.1394C>G	p.Thr465Ser	p.T465S	ENST00000308731	NM_000061.2	465	aCc/aGc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652126	36652141	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGAGGCCGGGATGA	GGCGAGGCCGGGATGA	TC			P-0001324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	43	266	0	ENST00000244741.5:c.248_263delinsTC	p.Arg83LeufsTer41	p.R83Lfs*41	ENST00000244741	NM_000389.4	83	cGGCGAGGCCGGGATGAg/cTCg																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793471	89793471	+	splice_acceptor_variant	Splice_Site	INS	G	G	TCC			P-0001324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	49	159	0	ENST00000336032.3:c.541-1delinsTCC		p.X181_splice	ENST00000336032	NM_006813.2	181																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001354-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	10	97	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652198	36652199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001354-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			730	45	285	0	ENST00000244741.5:c.322dup	p.Glu108GlyfsTer21	p.E108Gfs*21	ENST00000244741	NM_000389.4	107	gag/gaGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001358-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			49	40	190	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001358-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			128	92	431	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0001358-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			155	121	499	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
MDM4	4194	MSKCC	GRCh37	1	204494705	204494705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			594	65	283	0	ENST00000367182.3:c.59C>G	p.Ser20Cys	p.S20C	ENST00000367182	NM_001278516.1	20	tCt/tGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55564570	55564570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	20	303	0	ENST00000288135.5:c.458G>A	p.Gly153Glu	p.G153E	ENST00000288135	NM_000222.2	153	gGg/gAg																																																																														
NPM1	4869	MSKCC	GRCh37	5	170819954	170819954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	40	187	1	ENST00000296930.5:c.496G>T	p.Asp166Tyr	p.D166Y	ENST00000296930	NM_002520.6	166	Gat/Tat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176719042	176719042	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	24	213	0	ENST00000439151.2:c.6346G>T	p.Glu2116Ter	p.E2116*	ENST00000439151	NM_022455.4	2116	Gag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099173	157099173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	22	203	0	ENST00000346085.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000346085	NM_020732.3	37	tCc/tAc																																																																														
HGF	3082	MSKCC	GRCh37	7	81359014	81359014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	81	509	0	ENST00000222390.5:c.947C>A	p.Thr316Asn	p.T316N	ENST00000222390	NM_000601.4	316	aCt/aAt																																																																														
HGF	3082	MSKCC	GRCh37	7	81399208	81399208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	63	172	0	ENST00000222390.5:c.80C>A	p.Pro27His	p.P27H	ENST00000222390	NM_000601.4	27	cCc/cAc																																																																														
RET	5979	MSKCC	GRCh37	10	43604679	43604679	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0001375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	18	227	0	ENST00000355710.3:c.1263+1G>T		p.X421_splice	ENST00000355710	NM_020975.4	421																																																																															
ARID2	196528	MSKCC	GRCh37	12	46285807	46285807	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	84	201	0	ENST00000334344.6:c.5075C>G	p.Ser1692Ter	p.S1692*	ENST00000334344	NM_152641.2	1692	tCa/tGa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777991	3777991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	31	418	0	ENST00000262367.5:c.7057C>T	p.Arg2353Trp	p.R2353W	ENST00000262367	NM_004380.2	2353	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579494	7579494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	12	188	0	ENST00000269305.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000269305	NM_001126112.2	65	Aga/Tga																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317472	1317472	+	downstream_gene_variant	3'Flank	SNP	G	G	T			P-0001375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	48	453	0				ENST00000381566																																																																																	
KEAP1	9817	MSKCC	GRCh37	19	10602901	10602908	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTGGGA	CAGTGGGA	-			P-0001375-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	20	276	0	ENST00000171111.5:c.670_677del	p.Ser224ProfsTer123	p.S224Pfs*123	ENST00000171111	NM_203500.1	224	TCCCACTGc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001392-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	1644	417	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001392-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			29	127	184	0				ENST00000310581	NM_198253.2																																																																																
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001392-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	184	593	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001409-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	101	268	1				ENST00000310581	NM_198253.2																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198267489	198267489	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001409-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	104	336	0	ENST00000335508.6:c.1868A>G	p.Tyr623Cys	p.Y623C	ENST00000335508	NM_012433.2	623	tAt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001453-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			87	130	72	0				ENST00000310581	NM_198253.2																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212251668	212251668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001453-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	182	402	0	ENST00000342788.4:c.3391G>A	p.Asp1131Asn	p.D1131N	ENST00000342788	NM_005235.2	1131	Gac/Aac																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376288	225376288	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001453-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			598	160	450	0	ENST00000264414.4:c.666G>C	p.Gln222His	p.Q222H	ENST00000264414	NM_003590.4	222	caG/caC																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584437	52584437	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0001453-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	69	269	0	ENST00000394830.3:c.4576G>C	p.Ala1526Pro	p.A1526P	ENST00000394830	NM_018313.4	1526	Gct/Cct																																																																														
APC	324	MSKCC	GRCh37	5	112111409	112111409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001453-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	249	415	0	ENST00000257430.4:c.506T>C	p.Ile169Thr	p.I169T	ENST00000257430	NM_000038.5	169	aTa/aCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860620	151860620	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001453-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			827	285	567	0	ENST00000262189.6:c.10042C>A	p.Pro3348Thr	p.P3348T	ENST00000262189	NM_170606.2	3348	Cct/Act																																																																														
ABL1	25	MSKCC	GRCh37	9	133738211	133738211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001453-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	82	385	0	ENST00000318560.5:c.611C>T	p.Thr204Met	p.T204M	ENST00000318560	NM_005157.4	204	aCg/aTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593519	48593519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001453-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	43	314	0	ENST00000342988.3:c.1270G>A	p.Asp424Asn	p.D424N	ENST00000342988	NM_005359.5	424	Gat/Aat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11168953	11168953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001453-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	109	274	0	ENST00000344626.4:c.4447G>A	p.Glu1483Lys	p.E1483K	ENST00000344626	NM_003072.3	1483	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44879961	44879961	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001453-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	350	253	0	ENST00000377967.4:c.550G>C	p.Glu184Gln	p.E184Q	ENST00000377967	NM_021140.2	184	Gag/Cag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247360	153247361	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0001453-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	35	251	0	ENST00000281708.4:c.1441_1442del	p.Ala481HisfsTer3	p.A481Hfs*3	ENST00000281708	NM_033632.3	481	GCc/c																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466293	120466293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	47	372	0	ENST00000256646.2:c.4826C>T	p.Ser1609Phe	p.S1609F	ENST00000256646	NM_024408.3	1609	tCc/tTc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156837913	156837913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			747	50	390	0	ENST00000524377.1:c.446C>T	p.Pro149Leu	p.P149L	ENST00000524377	NM_002529.3	149	cCt/cTt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25990587	25990587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	41	322	0	ENST00000435504.4:c.640G>A	p.Glu214Lys	p.E214K	ENST00000435504		214	Gaa/Aaa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190717435	190717435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	82	463	0	ENST00000441310.2:c.754C>T	p.Leu252Phe	p.L252F	ENST00000441310	NM_000534.4	252	Ctt/Ttt																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735407	204735407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	62	253	0	ENST00000302823.3:c.208C>T	p.Arg70Trp	p.R70W	ENST00000302823	NM_005214.4	70	Cgg/Tgg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248738	212248738	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	60	354	0	ENST00000342788.4:c.3529A>T	p.Asn1177Tyr	p.N1177Y	ENST00000342788	NM_005235.2	1177	Aat/Tat																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670400	134670400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	53	409	0	ENST00000398015.3:c.311G>A	p.Gly104Glu	p.G104E	ENST00000398015	NM_004441.4	104	gGa/gAa																																																																														
ATR	545	MSKCC	GRCh37	3	142188397	142188397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	44	324	1	ENST00000350721.4:c.6334C>T	p.Arg2112Cys	p.R2112C	ENST00000350721	NM_001184.3	2112	Cgt/Tgt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146382	185146382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	42	210	0	ENST00000265026.3:c.13C>T	p.Gln5Ter	p.Q5*	ENST00000265026	NM_004721.4	5	Cag/Tag																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185161310	185161310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	69	500	0	ENST00000265026.3:c.737G>A	p.Arg246Gln	p.R246Q	ENST00000265026	NM_004721.4	246	cGa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189586482	189586482	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	26	159	0	ENST00000264731.3:c.1106A>T	p.Lys369Met	p.K369M	ENST00000264731	NM_003722.4	369	aAg/aTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	54	352	2	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1800980	1800980	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	90	438	1	ENST00000260795.2:c.110-1G>A		p.X37_splice	ENST00000260795		37																																																																															
KDR	3791	MSKCC	GRCh37	4	55948209	55948209	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	46	450	0	ENST00000263923.4:c.3763-1G>A		p.X1255_splice	ENST00000263923	NM_002253.2	1255																																																																															
TET2	54790	MSKCC	GRCh37	4	106162522	106162522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	52	341	0	ENST00000380013.4:c.3436C>T	p.Pro1146Ser	p.P1146S	ENST00000380013	NM_001127208.2	1146	Cct/Tct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557896	187557896	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	96	547	0	ENST00000441802.2:c.3815A>C	p.Tyr1272Ser	p.Y1272S	ENST00000441802	NM_005245.3	1272	tAt/tCt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	39	125	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295253	1295253	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	41	142	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35867535	35867535	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	29	373	0	ENST00000303115.3:c.349A>G	p.Thr117Ala	p.T117A	ENST00000303115	NM_002185.3	117	Acc/Gcc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871292	35871292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	39	339	0	ENST00000303115.3:c.514G>A	p.Glu172Lys	p.E172K	ENST00000303115	NM_002185.3	172	Gaa/Aaa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155705	56155705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	48	280	0	ENST00000399503.3:c.797C>T	p.Ser266Phe	p.S266F	ENST00000399503	NM_005921.1	266	tCt/tTt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505141	149505141	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	87	443	0	ENST00000261799.4:c.1675-1G>A		p.X559_splice	ENST00000261799	NM_002609.3	559																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673367	30673367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			839	112	579	0	ENST00000376406.3:c.3593C>T	p.Thr1198Ile	p.T1198I	ENST00000376406	NM_014641.2	1198	aCc/aTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675160	30675161	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			636	122	457	0	ENST00000376406.3:c.3084_3084+1delinsAA		p.X1028_splice	ENST00000376406	NM_014641.2	1028																																																																															
MDC1	9656	MSKCC	GRCh37	6	30679804	30679804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			613	80	434	0	ENST00000376406.3:c.1915C>T	p.Pro639Ser	p.P639S	ENST00000376406	NM_014641.2	639	Cct/Tct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170217	32170217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	119	274	0	ENST00000375023.3:c.3391C>T	p.Pro1131Ser	p.P1131S	ENST00000375023	NM_004557.3	1131	Cct/Tct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710822	117710822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	54	432	0	ENST00000368508.3:c.1450G>A	p.Gly484Ser	p.G484S	ENST00000368508	NM_002944.2	484	Ggc/Agc																																																																														
PARK2	5071	MSKCC	GRCh37	6	162622275	162622275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	75	364	0	ENST00000366898.1:c.422C>T	p.Ser141Leu	p.S141L	ENST00000366898	NM_004562.2	141	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152009005	152009005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			485	51	343	0	ENST00000262189.6:c.617T>C	p.Val206Ala	p.V206A	ENST00000262189	NM_170606.2	206	gTa/gCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528768	8528768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	54	326	0	ENST00000356435.5:c.364C>T	p.Pro122Ser	p.P122S	ENST00000356435		122	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636794	8636794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	51	407	0	ENST00000356435.5:c.115G>A	p.Gly39Arg	p.G39R	ENST00000356435		39	Gga/Aga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	38	83	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	38	83	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
PAX5	5079	MSKCC	GRCh37	9	36846865	36846866	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	61	378	0	ENST00000358127.4:c.1073_1074delinsAA	p.Trp358Ter	p.W358*	ENST00000358127	NM_001280556.1	358	tGG/tAA																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115783	8115783	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			834	104	739	0	ENST00000346208.3:c.1129A>T	p.Lys377Ter	p.K377*	ENST00000346208		377	Aaa/Taa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852470	63852470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	82	359	0	ENST00000279873.7:c.3248C>T	p.Ser1083Phe	p.S1083F	ENST00000279873	NM_032199.2	1083	tCc/tTc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94194200	94194200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	123	561	0	ENST00000323929.3:c.1228G>A	p.Glu410Lys	p.E410K	ENST00000323929	NM_005591.3	410	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442485	49442485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	69	560	0	ENST00000301067.7:c.4088C>T	p.Thr1363Ile	p.T1363I	ENST00000301067	NM_003482.3	1363	aCc/aTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444514	49444514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	55	224	0	ENST00000301067.7:c.2857C>T	p.Pro953Ser	p.P953S	ENST00000301067	NM_003482.3	953	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446060	49446060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	67	350	0	ENST00000301067.7:c.1406C>T	p.Pro469Leu	p.P469L	ENST00000301067	NM_003482.3	469	cCa/cTa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56477676	56477676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	64	366	0	ENST00000267101.3:c.224C>T	p.Ser75Phe	p.S75F	ENST00000267101	NM_001982.3	75	tCc/tTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115110068	115110068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	36	209	0	ENST00000257566.3:c.1810C>T	p.Pro604Ser	p.P604S	ENST00000257566	NM_016569.3	604	Ccc/Tcc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115110091	115110091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	26	189	0	ENST00000257566.3:c.1787C>T	p.Pro596Leu	p.P596L	ENST00000257566	NM_016569.3	596	cCt/cTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877480	28877480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	49	308	0	ENST00000282397.4:c.3841G>A	p.Glu1281Lys	p.E1281K	ENST00000282397	NM_002019.4	1281	Gag/Aag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465501	99465501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	155	398	1	ENST00000268035.6:c.2326C>T	p.Pro776Ser	p.P776S	ENST00000268035	NM_000875.3	776	Cct/Tct																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347900	347900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			764	154	767	0	ENST00000262320.3:c.1606C>T	p.His536Tyr	p.H536Y	ENST00000262320	NM_003502.3	536	Cac/Tac																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226314	2226314	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			598	93	345	1	ENST00000326181.6:c.1927C>T	p.Gln643Ter	p.Q643*	ENST00000326181	NM_032271.2	643	Cag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807367	3807367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	57	227	0	ENST00000262367.5:c.3620C>T	p.Ser1207Phe	p.S1207F	ENST00000262367	NM_004380.2	1207	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29560175	29560175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	45	263	0	ENST00000358273.4:c.3652C>T	p.Gln1218Ter	p.Q1218*	ENST00000358273	NM_001042492.2	1218	Caa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29670026	29670026	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	70	392	0	ENST00000358273.4:c.7063-1G>A		p.X2355_splice	ENST00000358273	NM_001042492.2	2355																																																																															
CDK12	51755	MSKCC	GRCh37	17	37682333	37682333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	64	467	0	ENST00000447079.4:c.3524C>T	p.Pro1175Leu	p.P1175L	ENST00000447079	NM_015083.1	1175	cCa/cTa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59876557	59876557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	54	456	0	ENST00000259008.2:c.1244T>C	p.Leu415Pro	p.L415P	ENST00000259008	NM_032043.2	415	cTt/cCt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533791	63533791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	75	389	0	ENST00000307078.5:c.1363C>T	p.Pro455Ser	p.P455S	ENST00000307078	NM_004655.3	455	Cca/Tca																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39550301	39550301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	51	408	0	ENST00000262039.4:c.412C>A	p.Gln138Lys	p.Q138K	ENST00000262039	NM_002647.2	138	Caa/Aaa																																																																														
PMAIP1	5366	MSKCC	GRCh37	18	57567469	57567469	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	45	233	0	ENST00000316660.6:c.58+2T>C		p.X20_splice	ENST00000316660	NM_021127.2	20																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222230	2222230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	163	462	0	ENST00000398665.3:c.3062C>T	p.Pro1021Leu	p.P1021L	ENST00000398665	NM_032482.2	1021	cCc/cTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226953	2226953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	32	217	0	ENST00000398665.3:c.4433C>T	p.Pro1478Leu	p.P1478L	ENST00000398665	NM_032482.2	1478	cCc/cTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	171	490	0	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248611	10248611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	138	386	0	ENST00000340748.4:c.4142C>T	p.Ala1381Val	p.A1381V	ENST00000340748		1381	gCc/gTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141523	11141523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			655	50	432	1	ENST00000344626.4:c.3500C>T	p.Ser1167Leu	p.S1167L	ENST00000344626	NM_003072.3	1167	tCg/tTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292570	15292570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	131	308	0	ENST00000263388.2:c.2609C>T	p.Ser870Phe	p.S870F	ENST00000263388	NM_000435.2	870	tCc/tTc																																																																														
AKT2	208	MSKCC	GRCh37	19	40741880	40741880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	169	475	0	ENST00000392038.2:c.1092G>A	p.Met364Ile	p.M364I	ENST00000392038	NM_001626.4	364	atG/atA																																																																														
AXL	558	MSKCC	GRCh37	19	41736898	41736898	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			598	198	548	0	ENST00000301178.4:c.613T>A	p.Cys205Ser	p.C205S	ENST00000301178	NM_021913.4	205	Tgc/Agc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561418	9561418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			493	50	374	0	ENST00000353224.5:c.364G>A	p.Glu122Lys	p.E122K	ENST00000353224	NM_177990.2	122	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40899063	40899063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	86	642	0	ENST00000373198.4:c.2207G>T	p.Gly736Val	p.G736V	ENST00000373198	NM_133170.3	736	gGg/gTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944374	40944374	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	52	317	0	ENST00000373198.4:c.2128A>C	p.Lys710Gln	p.K710Q	ENST00000373198	NM_133170.3	710	Aaa/Caa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306689	41306689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	80	406	0	ENST00000373198.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000373198	NM_133170.3	324	Gaa/Aaa																																																																														
ERG	2078	MSKCC	GRCh37	21	39817359	39817359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			529	45	414	0	ENST00000288319.7:c.204G>A	p.Met68Ile	p.M68I	ENST00000288319	NM_182918.3	68	atG/atA																																																																														
ERG	2078	MSKCC	GRCh37	21	39817382	39817382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	56	402	0	ENST00000288319.7:c.181C>T	p.Pro61Ser	p.P61S	ENST00000288319	NM_182918.3	61	Cca/Tca																																																																														
MED12	9968	MSKCC	GRCh37	X	70357199	70357199	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	89	312	0	ENST00000374080.3:c.5714T>G	p.Val1905Gly	p.V1905G	ENST00000374080		1905	gTg/gGg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	89	355	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	47	111	0				ENST00000310581	NM_198253.2																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0001501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	269	324	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023039	27023039	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	55	25	0	ENST00000324856.7:c.145G>T	p.Glu49Ter	p.E49*	ENST00000324856	NM_006015.4	49	Gaa/Taa																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431640	6431640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			590	253	268	0	ENST00000356142.4:c.193G>A	p.Asp65Asn	p.D65N	ENST00000356142	NM_018890.3	65	Gac/Aac																																																																														
NBN	4683	MSKCC	GRCh37	8	90958409	90958409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			837	111	429	0	ENST00000265433.3:c.2029G>A	p.Asp677Asn	p.D677N	ENST00000265433	NM_002485.4	677	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427975	49427975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	277	544	0	ENST00000301067.7:c.10615C>T	p.Arg3539Trp	p.R3539W	ENST00000301067	NM_003482.3	3539	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447019	49447019	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	194	328	0	ENST00000301067.7:c.925G>T	p.Glu309Ter	p.E309*	ENST00000301067	NM_003482.3	309	Gaa/Taa																																																																														
EP300	2033	MSKCC	GRCh37	22	41574580	41574580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	80	525	2	ENST00000263253.7:c.6865G>T	p.Ala2289Ser	p.A2289S	ENST00000263253	NM_001429.3	2289	Gcc/Tcc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651953	36651974	+	frameshift_variant	Frame_Shift_Del	DEL	GGACAGCGAGCAGCTGAGCCGC	GGACAGCGAGCAGCTGAGCCGC	-			P-0001501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	39	253	0	ENST00000244741.5:c.76_97del	p.Asp26ThrfsTer5	p.D26Tfs*5	ENST00000244741	NM_000389.4	25	gtGGACAGCGAGCAGCTGAGCCGC/gt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652147	36652148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	199	342	0	ENST00000244741.5:c.270dup	p.Gly91ArgfsTer38	p.G91Rfs*38	ENST00000244741	NM_000389.4	90	gga/ggAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426069	49426070	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	116	314	0	ENST00000301067.7:c.12418dup	p.Ser4140PhefsTer28	p.S4140Ffs*28	ENST00000301067	NM_003482.3	4140	tcc/tTcc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651921	36651933	+	protein_altering_variant	In_Frame_Del	DEL	AGCAAGGCCTGCC	AGCAAGGCCTGCC	G			P-0001501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	24	224	0	ENST00000244741.5:c.43_55delinsG	p.Ser15_Arg19delinsGly	p.S15_R19delinsG	ENST00000244741	NM_000389.4	15	AGCAAGGCCTGCCgc/Ggc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	27	91	0				ENST00000310581	NM_198253.2																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153268200	153268200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			710	98	346	0	ENST00000281708.4:c.608C>T	p.Ser203Leu	p.S203L	ENST00000281708	NM_033632.3	203	tCa/tTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681925	30681925	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	20	117	0	ENST00000376406.3:c.172C>T	p.Arg58Ter	p.R58*	ENST00000376406	NM_014641.2	58	Cga/Tga																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192371	138192371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	36	111	0	ENST00000237289.4:c.7G>A	p.Glu3Lys	p.E3K	ENST00000237289	NM_001270507.1	3	Gaa/Aaa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161519	2161519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	117	447	0	ENST00000434045.2:c.8C>T	p.Ser3Phe	p.S3F	ENST00000434045	NM_001127598.1	3	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420670	49420670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	59	218	0	ENST00000301067.7:c.15079C>T	p.Arg5027Ter	p.R5027*	ENST00000301067	NM_003482.3	5027	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133226421	133226421	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	64	441	0	ENST00000320574.5:c.3637G>C	p.Glu1213Gln	p.E1213Q	ENST00000320574	NM_006231.2	1213	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	74	247	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433381	49433381	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	30	203	0	ENST00000301067.7:c.8066del	p.Leu2689ArgfsTer2	p.L2689Rfs*2	ENST00000301067	NM_003482.3	2689	cTg/cg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	30	162	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0001523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	32	353	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131505	202131505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	32	230	0	ENST00000358485.4:c.473C>T	p.Ser158Phe	p.S158F	ENST00000358485	NM_001080125.1	158	tCt/tTt																																																																														
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	156	350	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																														
WT1	7490	MSKCC	GRCh37	11	32417814	32417814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	83	379	0	ENST00000332351.3:c.1238G>A	p.Arg413Lys	p.R413K	ENST00000332351	NM_024426.4	413	aGg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0001530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			113	142	137	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0001530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	542	422	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459710	149459710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	334	363	2	ENST00000286301.3:c.497G>A	p.Arg166Lys	p.R166K	ENST00000286301	NM_005211.3	166	aGg/aAg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735476	204735476	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	361	369	0	ENST00000302823.3:c.277A>T	p.Asn93Tyr	p.N93Y	ENST00000302823	NM_005214.4	93	Aat/Tat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562873	176562873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	515	380	3	ENST00000439151.2:c.769C>T	p.Pro257Ser	p.P257S	ENST00000439151	NM_022455.4	257	Ccc/Tcc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575521	64575521	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	434	336	1	ENST00000337652.1:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000337652	NM_130803.2	171	Cag/Tag																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94194142	94194142	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs141293060		P-0001530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	542	455	2	ENST00000323929.3:c.1286T>C	p.Val429Ala	p.V429A	ENST00000323929	NM_005591.3	429	gTa/gCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425424	49425424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	431	444	0	ENST00000301067.7:c.13064C>T	p.Pro4355Leu	p.P4355L	ENST00000301067	NM_003482.3	4355	cCt/cTt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290187	15290187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	317	354	0	ENST00000263388.2:c.3448C>T	p.Pro1150Ser	p.P1150S	ENST00000263388	NM_000435.2	1150	Cca/Tca																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355050	15355050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	225	186	1	ENST00000263377.2:c.2573C>T	p.Ser858Phe	p.S858F	ENST00000263377	NM_058243.2	858	tCt/tTt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772901	135772902	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	651	416	4	ENST00000298552.3:c.2721dup	p.Arg908ThrfsTer42	p.R908Tfs*42	ENST00000298552	NM_001162426.1	907	-/A																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138507	2138510	+	frameshift_variant	Frame_Shift_Del	DEL	AGCA	AGCA	-			P-0001530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	250	430	0	ENST00000219476.3:c.5321_5324del	p.Ser1774LysfsTer51	p.S1774Kfs*51	ENST00000219476	NM_000548.3	1774	AGCAaa/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0001538-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			214	42	169	0				ENST00000310581	NM_198253.2																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001538-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	128	492	1	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046357	180046357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001538-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	58	271	0	ENST00000261937.6:c.2657C>T	p.Thr886Met	p.T886M	ENST00000261937	NM_182925.4	886	aCg/aTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631594	28631594	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001538-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	54	322	0	ENST00000241453.7:c.374T>A	p.Val125Asp	p.V125D	ENST00000241453	NM_004119.2	125	gTt/gAt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15378269	15378269	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001538-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	120	686	0	ENST00000263377.2:c.517A>G	p.Ile173Val	p.I173V	ENST00000263377	NM_058243.2	173	Ata/Gta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	43	118	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0001557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	198	300	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973259	25973259	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	47	224	0	ENST00000435504.4:c.1166C>G	p.Ser389Cys	p.S389C	ENST00000435504		389	tCt/tGt																																																																														
ATR	545	MSKCC	GRCh37	3	142261571	142261571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	280	353	0	ENST00000350721.4:c.3386G>A	p.Gly1129Asp	p.G1129D	ENST00000350721	NM_001184.3	1129	gGc/gAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917537	178917537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			785	55	322	0	ENST00000263967.3:c.412G>T	p.Asp138Tyr	p.D138Y	ENST00000263967	NM_006218.2	138	Gac/Tac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189874	66189874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	64	371	0	ENST00000273854.3:c.3072A>T	p.Gln1024His	p.Q1024H	ENST00000273854	NM_004439.5	1024	caA/caT																																																																														
HGF	3082	MSKCC	GRCh37	7	81372716	81372716	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	208	340	0	ENST00000222390.5:c.818C>G	p.Thr273Ser	p.T273S	ENST00000222390	NM_000601.4	273	aCt/aGt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59820373	59820373	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0001557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	49	347	0	ENST00000259008.2:c.2379+1G>C		p.X793_splice	ENST00000259008	NM_032043.2	793																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44938389	44938389	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0001557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	199	219	0	ENST00000377967.4:c.2939-2A>T		p.X980_splice	ENST00000377967	NM_021140.2	980																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089694	27089712	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCCCCCACCAGGGGGCA	TGTCCCCCACCAGGGGGCA	-			P-0001557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	24	311	0	ENST00000324856.7:c.2652_2670del	p.Cys884Ter	p.C884*	ENST00000324856	NM_006015.4	884	TGTCCCCCACCAGGGGGCAtg/tg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198288659	198288661	+	missense_variant	Missense_Mutation	ONP	GCC	GCC	AAA			P-0001557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	44	422	0	ENST00000335508.6:c.66_68delinsTTT	p.Lys22_Ala23delinsAsnLeu	p.K22_A23delinsNL	ENST00000335508	NM_012433.2	22	aaGGCa/aaTTTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157256627	157256628	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0001557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	50	380	0	ENST00000346085.5:c.1954_1955delinsTT	p.Arg652Leu	p.R652L	ENST00000346085	NM_020732.3	652	AGa/TTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	113	172	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	779	531	1	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			710	779	575	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057724	27057724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			861	979	710	1	ENST00000324856.7:c.1432C>T	p.Pro478Ser	p.P478S	ENST00000324856	NM_006015.4	478	Cct/Tct																																																																														
JAK1	3716	MSKCC	GRCh37	1	65304216	65304216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			769	938	592	2	ENST00000342505.4:c.2899T>C	p.Tyr967His	p.Y967H	ENST00000342505	NM_002227.2	967	Tat/Cat																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026826	71026826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1314	754	603	0	ENST00000318789.4:c.1396C>T	p.Pro466Ser	p.P466S	ENST00000318789	NM_032682.5	466	Cca/Tca																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119562125	119562125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	944	493	0	ENST00000316626.5:c.1211C>T	p.Pro404Leu	p.P404L	ENST00000316626		404	cCc/cTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612137	189612137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1649	387	552	0	ENST00000264731.3:c.1889C>T	p.Ser630Phe	p.S630F	ENST00000264731	NM_003722.4	630	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612205	189612205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1531	360	516	0	ENST00000264731.3:c.1957C>T	p.Pro653Ser	p.P653S	ENST00000264731	NM_003722.4	653	Cca/Tca																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			670	351	555	0	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047194	180047194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	292	435	0	ENST00000261937.6:c.2521C>T	p.Pro841Ser	p.P841S	ENST00000261937	NM_182925.4	841	Ccc/Tcc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513006	106513006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1199	638	444	0	ENST00000359195.3:c.2020G>A	p.Asp674Asn	p.D674N	ENST00000359195	NM_002649.2	674	Gat/Aat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859534	151859534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145646770		P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1220	752	560	0	ENST00000262189.6:c.11128G>A	p.Glu3710Lys	p.E3710K	ENST00000262189	NM_170606.2	3710	Gaa/Aaa																																																																														
SYK	6850	MSKCC	GRCh37	9	93639976	93639976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			761	112	414	0	ENST00000375746.1:c.1305G>A	p.Met435Ile	p.M435I	ENST00000375746	NM_001174167.1	435	atG/atA																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100543	8100543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	656	545	0	ENST00000346208.3:c.517G>A	p.Ala173Thr	p.A173T	ENST00000346208		173	Gcc/Acc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230717	46230717	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			764	804	632	0	ENST00000334344.6:c.966T>G	p.Ser322Arg	p.S322R	ENST00000334344	NM_152641.2	322	agT/agG																																																																														
POLE	5426	MSKCC	GRCh37	12	133210961	133210961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	592	465	0	ENST00000320574.5:c.5815G>A	p.Asp1939Asn	p.D1939N	ENST00000320574	NM_006231.2	1939	Gac/Aac																																																																														
RAD51	5888	MSKCC	GRCh37	15	41021723	41021723	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1005	460	477	0	ENST00000267868.3:c.665A>C	p.Asp222Ala	p.D222A	ENST00000267868	NM_002875.4	222	gAc/gCc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680721	88680721	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			882	319	500	0	ENST00000360948.2:c.536A>T	p.Glu179Val	p.E179V	ENST00000360948	NM_001012338.2	179	gAg/gTg																																																																														
AXL	558	MSKCC	GRCh37	19	41743864	41743864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	304	501	0	ENST00000301178.4:c.799G>A	p.Asp267Asn	p.D267N	ENST00000301178	NM_021913.4	267	Gat/Aat																																																																														
ERG	2078	MSKCC	GRCh37	21	39755548	39755548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	519	496	0	ENST00000288319.7:c.1217C>T	p.Ser406Leu	p.S406L	ENST00000288319	NM_182918.3	406	tCa/tTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101053	27101054	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1277	187	555	0	ENST00000324856.7:c.4335_4336delinsAT	p.Arg1446Ter	p.R1446*	ENST00000324856	NM_006015.4	1445	cgCCga/cgATga																																																																														
POLE	5426	MSKCC	GRCh37	12	133201525	133201526	+	missense_variant	Missense_Mutation	DNP	CA	CA	GC			P-0001560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	539	457	0	ENST00000320574.5:c.6712_6713delinsGC	p.Cys2238Ala	p.C2238A	ENST00000320574	NM_006231.2	2238	TGc/GCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001578-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			731	295	384	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001578-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	130	139	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001578-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			698	268	367	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46715729	46715729	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001578-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1453	131	590	0	ENST00000371975.4:c.148C>G	p.Pro50Ala	p.P50A	ENST00000371975	NM_003579.3	50	Cct/Gct																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845408	156845408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001578-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1321	132	411	0	ENST00000524377.1:c.1451C>G	p.Ser484Cys	p.S484C	ENST00000524377	NM_002529.3	484	tCt/tGt																																																																														
REL	5966	MSKCC	GRCh37	2	61128147	61128147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001578-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			988	115	325	2	ENST00000295025.8:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000295025	NM_002908.2	108	cGa/cAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61713052	61713052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001578-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1168	141	499	0	ENST00000401558.2:c.2359G>A	p.Asp787Asn	p.D787N	ENST00000401558	NM_003400.3	787	Gat/Aat																																																																														
RET	5979	MSKCC	GRCh37	10	43601999	43601999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001578-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	591	382	0	ENST00000355710.3:c.1043G>A	p.Arg348Gln	p.R348Q	ENST00000355710	NM_020975.4	348	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425847	49425847	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0001578-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	740	373	0	ENST00000301067.7:c.12641T>G	p.Leu4214Ter	p.L4214*	ENST00000301067	NM_003482.3	4214	tTa/tGa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001578-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			707	566	368	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	48941653	48941653	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001578-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			716	413	449	0	ENST00000267163.4:c.963C>G	p.Tyr321Ter	p.Y321*	ENST00000267163	NM_000321.2	321	taC/taG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	63	128	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	207	420	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	162	410	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	155	327	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	132	210	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	132	210	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538374	9538374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	72	295	0	ENST00000353224.5:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000353224	NM_177990.2	542	Gaa/Aaa																																																																														
MPL	4352	MSKCC	GRCh37	1	43804263	43804263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	63	391	0	ENST00000372470.3:c.263G>A	p.Gly88Glu	p.G88E	ENST00000372470	NM_005373.2	88	gGa/gAa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873669	35873669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	110	440	0	ENST00000303115.3:c.625C>T	p.Pro209Ser	p.P209S	ENST00000303115	NM_002185.3	209	Cct/Tct																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553585	106553585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	47	231	0	ENST00000369096.4:c.1550C>T	p.Pro517Leu	p.P517L	ENST00000369096	NM_001198.3	517	cCc/cTc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196107	138196107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	54	375	0	ENST00000237289.4:c.421C>T	p.Arg141Cys	p.R141C	ENST00000237289	NM_001270507.1	141	Cgc/Tgc																																																																														
NBN	4683	MSKCC	GRCh37	8	90971052	90971052	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			964	71	393	0	ENST00000265433.3:c.1025T>A	p.Leu342His	p.L342H	ENST00000265433	NM_002485.4	342	cTt/cAt																																																																														
TET1	80312	MSKCC	GRCh37	10	70446314	70446314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	164	413	0	ENST00000373644.4:c.5254C>T	p.Pro1752Ser	p.P1752S	ENST00000373644	NM_030625.2	1752	Ccc/Tcc																																																																														
ATM	472	MSKCC	GRCh37	11	108204678	108204678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	15	242	0	ENST00000278616.4:c.7993C>T	p.Pro2665Ser	p.P2665S	ENST00000278616	NM_000051.3	2665	Cct/Tct																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112891030	112891030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	133	289	0	ENST00000351677.2:c.364G>A	p.Ala122Thr	p.A122T	ENST00000351677	NM_002834.3	122	Gca/Aca																																																																														
FLT3	2322	MSKCC	GRCh37	13	28610071	28610071	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	124	432	0	ENST00000241453.7:c.1418+1G>A		p.X473_splice	ENST00000241453	NM_004119.2	473																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857197	9857197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	159	452	1	ENST00000330684.3:c.4204C>T	p.Arg1402Trp	p.R1402W	ENST00000330684	NM_001134407.1	1402	Cgg/Tgg																																																																														
AXL	558	MSKCC	GRCh37	19	41743897	41743897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			595	140	380	0	ENST00000301178.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000301178	NM_021913.4	278	Ccc/Tcc																																																																														
AXL	558	MSKCC	GRCh37	19	41765528	41765528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	169	388	0	ENST00000301178.4:c.2404G>A	p.Asp802Asn	p.D802N	ENST00000301178	NM_021913.4	802	Gat/Aat																																																																														
BTK	695	MSKCC	GRCh37	X	100611248	100611248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	92	165	0	ENST00000308731.7:c.1358C>T	p.Ser453Phe	p.S453F	ENST00000308731	NM_000061.2	453	tCc/tTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184066	123184066	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001603-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			104	94	228	0	ENST00000218089.9:c.924C>A	p.Cys308Ter	p.C308*	ENST00000218089	NM_001042749.1	308	tgC/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001621-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	32	182	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001621-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	102	358	1	ENST00000269305.4:c.764T>A	p.Ile255Asn	p.I255N	ENST00000269305	NM_001126112.2	255	aTc/aAc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882959	89882959	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001621-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	51	85	0	ENST00000389301.3:c.65G>A	p.Trp22Ter	p.W22*	ENST00000389301	NM_000135.2	22	tGg/tAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001638-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	131	227	0				ENST00000310581	NM_198253.2																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123247530	123247530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001638-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	333	600	0	ENST00000358487.5:c.1961T>C	p.Ile654Thr	p.I654T	ENST00000358487	NM_000141.4	654	aTa/aCa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106782	27106783	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0001638-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			662	242	570	0	ENST00000324856.7:c.6395_6396del	p.Val2132GlyfsTer17	p.V2132Gfs*17	ENST00000324856	NM_006015.4	2131	aaTGtg/aatg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001641-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	47	164	0				ENST00000310581	NM_198253.2																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120496238	120496238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001641-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	113	589	0	ENST00000256646.2:c.2293C>A	p.Pro765Thr	p.P765T	ENST00000256646	NM_024408.3	765	Cca/Aca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629589	187629589	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001641-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	129	555	0	ENST00000441802.2:c.1393C>T	p.Gln465Ter	p.Q465*	ENST00000441802	NM_005245.3	465	Cag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246410	41246410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001641-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	53	616	0	ENST00000357654.3:c.1138C>G	p.Gln380Glu	p.Q380E	ENST00000357654	NM_007294.3	380	Cag/Gag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	77	156	0				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49433394	49433394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	56	216	0	ENST00000301067.7:c.8053C>T	p.Arg2685Ter	p.R2685*	ENST00000301067	NM_003482.3	2685	Cga/Tga																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			690	159	451	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
REL	5966	MSKCC	GRCh37	2	61145398	61145398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	98	376	1	ENST00000295025.8:c.608A>G	p.Glu203Gly	p.E203G	ENST00000295025	NM_002908.2	203	gAa/gGa																																																																														
CASP8	841	MSKCC	GRCh37	2	202136258	202136258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	144	435	0	ENST00000358485.4:c.502T>C	p.Ser168Pro	p.S168P	ENST00000358485	NM_001080125.1	168	Tca/Cca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			613	123	465	1	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589586	67589591	+	inframe_deletion	In_Frame_Del	DEL	ATGAAT	ATGAAT	-			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	55	336	2	ENST00000274335.5:c.1351_1356del	p.Glu451_Tyr452del	p.E451_Y452del	ENST00000274335		450	cATGAATat/cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974783	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAGT			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	173	211	0	ENST00000304494.5:c.41_44dup	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgg/tgACTGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974782	21974783	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAGT			P-0001680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	173	211	0	ENST00000304494.5:c.41_44dup	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgg/tgACTGg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	319	522	4	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120465373	120465373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	201	437	0	ENST00000256646.2:c.4888C>T	p.Arg1630Cys	p.R1630C	ENST00000256646	NM_024408.3	1630	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438647	49438647	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	169	557	0	ENST00000301067.7:c.4843C>T	p.Arg1615Ter	p.R1615*	ENST00000301067	NM_003482.3	1615	Cga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	29606646	29606646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147102592		P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	183	606	0	ENST00000389048.3:c.1234C>T	p.Arg412Cys	p.R412C	ENST00000389048	NM_004304.4	412	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433394	49433394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	79	310	0	ENST00000301067.7:c.8053C>T	p.Arg2685Ter	p.R2685*	ENST00000301067	NM_003482.3	2685	Cga/Tga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	186	701	1	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214594	5214594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	207	625	0	ENST00000357368.4:c.4472C>T	p.Thr1491Met	p.T1491M	ENST00000357368	NM_002850.3	1491	aCg/aTg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553257	106553257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	60	614	0	ENST00000369096.4:c.1222G>A	p.Ala408Thr	p.A408T	ENST00000369096	NM_001198.3	408	Gct/Act																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495360	149495360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114435947		P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	50	518	2	ENST00000261799.4:c.3287C>T	p.Ala1096Val	p.A1096V	ENST00000261799	NM_002609.3	1096	gCg/gTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11270918	11270918	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	148	531	1	ENST00000361445.4:c.3607C>T	p.Arg1203Ter	p.R1203*	ENST00000361445	NM_004958.3	1203	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11301656	11301656	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	131	488	0	ENST00000361445.4:c.1495C>T	p.Gln499Ter	p.Q499*	ENST00000361445	NM_004958.3	499	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255500	16255500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140341054		P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	191	438	0	ENST00000375759.3:c.2765C>T	p.Thr922Met	p.T922M	ENST00000375759	NM_015001.2	922	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023699	27023699	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	94	356	0	ENST00000324856.7:c.805C>T	p.Gln269Ter	p.Q269*	ENST00000324856	NM_006015.4	269	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097631	27097631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			735	55	612	0	ENST00000324856.7:c.3220C>T	p.Arg1074Trp	p.R1074W	ENST00000324856	NM_006015.4	1074	Cgg/Tgg																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46509485	46509485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	33	434	0	ENST00000262741.5:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000262741	NM_003629.3	416	Gca/Aca																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462051	120462051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	228	527	2	ENST00000256646.2:c.5665C>T	p.Arg1889Trp	p.R1889W	ENST00000256646	NM_024408.3	1889	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	29420492	29420492	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	173	497	0	ENST00000389048.3:c.3989A>G	p.Tyr1330Cys	p.Y1330C	ENST00000389048	NM_004304.4	1330	tAc/tGc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639626	47639626	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	164	493	1	ENST00000233146.2:c.719A>T	p.Asp240Val	p.D240V	ENST00000233146	NM_000251.2	240	gAc/gTc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639661	47639661	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	152	447	1	ENST00000233146.2:c.754C>T	p.Gln252Ter	p.Q252*	ENST00000233146	NM_000251.2	252	Cag/Tag																																																																														
REL	5966	MSKCC	GRCh37	2	61144120	61144120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			703	132	619	0	ENST00000295025.8:c.503C>T	p.Pro168Leu	p.P168L	ENST00000295025	NM_002908.2	168	cCt/cTt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61711081	61711081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	165	443	1	ENST00000401558.2:c.2668G>A	p.Ala890Thr	p.A890T	ENST00000401558	NM_003400.3	890	Gca/Aca																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99149945	99149945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	129	444	0	ENST00000074304.5:c.257C>T	p.Thr86Met	p.T86M	ENST00000074304	NM_001134224.1	86	aCg/aTg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661531	227661531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			900	57	589	0	ENST00000305123.5:c.1924G>A	p.Ala642Thr	p.A642T	ENST00000305123	NM_005544.2	642	Gcc/Acc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793269	242793269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	143	511	0	ENST00000334409.5:c.808G>A	p.Gly270Ser	p.G270S	ENST00000334409	NM_005018.2	270	Ggc/Agc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713688	30713688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	32	336	0	ENST00000359013.4:c.1088C>T	p.Thr363Met	p.T363M	ENST00000359013	NM_001024847.2	363	aCg/aTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436414	52436414	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	119	436	0	ENST00000460680.1:c.2080C>T	p.Gln694Ter	p.Q694*	ENST00000460680	NM_004656.3	694	Cag/Tag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090510	71090510	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			777	163	564	1	ENST00000318789.4:c.838C>T	p.Gln280Ter	p.Q280*	ENST00000318789	NM_032682.5	280	Cag/Tag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	125	325	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749500	41749500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	147	531	2	ENST00000226382.2:c.295C>T	p.Arg99Trp	p.R99W	ENST00000226382	NM_003924.3	99	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630753	187630753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			874	52	749	0	ENST00000441802.2:c.229G>A	p.Gly77Arg	p.G77R	ENST00000441802	NM_005245.3	77	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112176329	112176329	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	59	405	0	ENST00000257430.4:c.5038C>T	p.Gln1680Ter	p.Q1680*	ENST00000257430	NM_000038.5	1680	Cag/Tag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709523	176709523	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	165	541	0	ENST00000439151.2:c.5950C>T	p.Arg1984Ter	p.R1984*	ENST00000439151	NM_022455.4	1984	Cga/Tga																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552918	106552918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			891	63	669	0	ENST00000369096.4:c.883C>A	p.Pro295Thr	p.P295T	ENST00000369096	NM_001198.3	295	Cct/Act																																																																														
EGFR	1956	MSKCC	GRCh37	7	55220349	55220349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	101	334	0	ENST00000275493.2:c.739G>A	p.Asp247Asn	p.D247N	ENST00000275493	NM_005228.3	247	Gac/Aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140501317	140501317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	111	371	0	ENST00000288602.6:c.755G>A	p.Arg252Gln	p.R252Q	ENST00000288602	NM_004333.4	252	cGa/cAa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372044	55372044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	98	281	0	ENST00000297316.4:c.734G>A	p.Cys245Tyr	p.C245Y	ENST00000297316	NM_022454.3	245	tGc/tAc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372405	55372405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	53	623	0	ENST00000297316.4:c.1095G>C	p.Gln365His	p.Q365H	ENST00000297316	NM_022454.3	365	caG/caC																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98248030	98248030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	207	573	0	ENST00000331920.6:c.521C>T	p.Ala174Val	p.A174V	ENST00000331920	NM_000264.3	174	gCg/gTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390539	139390539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			658	152	679	0	ENST00000277541.6:c.7652C>T	p.Pro2551Leu	p.P2551L	ENST00000277541	NM_017617.3	2551	cCg/cTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391986	139391986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	115	452	0	ENST00000277541.6:c.6205G>A	p.Ala2069Thr	p.A2069T	ENST00000277541	NM_017617.3	2069	Gcc/Acc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399889	139399889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	48	581	0	ENST00000277541.6:c.4459T>C	p.Trp1487Arg	p.W1487R	ENST00000277541	NM_017617.3	1487	Tgg/Cgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412321	139412321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	119	458	0	ENST00000277541.6:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000277541	NM_017617.3	442	Cag/Tag																																																																														
TET1	80312	MSKCC	GRCh37	10	70442645	70442645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	201	559	0	ENST00000373644.4:c.4967G>A	p.Arg1656His	p.R1656H	ENST00000373644	NM_030625.2	1656	cGt/cAt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572612	64572612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	175	461	0	ENST00000337652.1:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000337652	NM_130803.2	420	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342391	118342391	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			551	165	548	0	ENST00000534358.1:c.517C>T	p.Arg173Ter	p.R173*	ENST00000534358	NM_005933.3	173	Cga/Tga																																																																														
RAD52	5893	MSKCC	GRCh37	12	1036353	1036353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	62	646	0	ENST00000358495.3:c.425C>T	p.Ala142Val	p.A142V	ENST00000358495	NM_134424.2	142	gCa/gTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230620	46230620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	185	532	0	ENST00000334344.6:c.869C>T	p.Ala290Val	p.A290V	ENST00000334344	NM_152641.2	290	gCa/gTa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112919975	112919975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	98	304	0	ENST00000351677.2:c.1190C>T	p.Thr397Met	p.T397M	ENST00000351677	NM_002834.3	397	aCg/aTg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435408	121435408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	55	612	1	ENST00000257555.6:c.1441C>T	p.Gln481Ter	p.Q481*	ENST00000257555		481	Cag/Tag																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631878	90631878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			589	178	567	0	ENST00000330062.3:c.475C>T	p.Arg159Cys	p.R159C	ENST00000330062	NM_002168.2	159	Cgc/Tgc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251016	99251016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			738	58	613	0	ENST00000268035.6:c.320G>A	p.Arg107His	p.R107H	ENST00000268035	NM_000875.3	107	cGc/cAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	148	615	0	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																															
TSC2	7249	MSKCC	GRCh37	16	2106741	2106741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	120	651	0	ENST00000219476.3:c.745G>A	p.Val249Ile	p.V249I	ENST00000219476	NM_000548.3	249	Gtc/Atc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89862403	89862403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	82	510	0	ENST00000389301.3:c.917C>G	p.Thr306Arg	p.T306R	ENST00000389301	NM_000135.2	306	aCg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577069	7577069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55819519		P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	153	559	0	ENST00000269305.4:c.869G>A	p.Arg290His	p.R290H	ENST00000269305	NM_001126112.2	290	cGc/cAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983316	15983316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			855	57	628	0	ENST00000268712.3:c.3463G>A	p.Val1155Met	p.V1155M	ENST00000268712	NM_006311.3	1155	Gtg/Atg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627715	37627715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			746	54	746	0	ENST00000447079.4:c.1630C>A	p.Pro544Thr	p.P544T	ENST00000447079	NM_015083.1	544	Cct/Act																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63545650	63545650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	184	502	0	ENST00000307078.5:c.944C>T	p.Thr315Met	p.T315M	ENST00000307078	NM_004655.3	315	aCg/aTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119006	70119006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			655	51	584	0	ENST00000245479.2:c.578C>T	p.Thr193Met	p.T193M	ENST00000245479	NM_000346.3	193	aCg/aTg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099262	4099262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	34	615	0	ENST00000262948.5:c.856G>T	p.Gly286Trp	p.G286W	ENST00000262948	NM_030662.3	286	Ggg/Tgg																																																																														
INSR	3643	MSKCC	GRCh37	19	7172376	7172376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	105	561	0	ENST00000302850.5:c.1193G>A	p.Arg398His	p.R398H	ENST00000302850	NM_000208.2	398	cGc/cAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11107000	11107000	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141090393		P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	125	491	0	ENST00000344626.4:c.1705C>T	p.Arg569Trp	p.R569W	ENST00000344626	NM_003072.3	569	Cgg/Tgg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266835	18266835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	22	256	0	ENST00000222254.8:c.146G>A	p.Arg49His	p.R49H	ENST00000222254	NM_005027.3	49	cGc/cAc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375168	31375168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147591633		P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	127	514	1	ENST00000328111.2:c.565G>A	p.Ala189Thr	p.A189T	ENST00000328111	NM_006892.3	189	Gcc/Acc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317461	1317461	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	177	595	0				ENST00000381566																																																																																	
RBM10	8241	MSKCC	GRCh37	X	47006883	47006883	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			719	70	579	0	ENST00000329236.7:c.3G>A	p.Met1?	p.M1?	ENST00000329236	NM_001204466.1	1	atG/atA																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649679	48649679	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150572851		P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	234	691	1	ENST00000376670.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000376670	NM_002049.3	55	Gct/Act																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223743	53223743	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	134	670	0	ENST00000375401.3:c.3616C>T	p.Gln1206Ter	p.Q1206*	ENST00000375401	NM_004187.3	1206	Cag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66905930	66905930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			752	245	618	0	ENST00000374690.3:c.1847G>A	p.Arg616His	p.R616H	ENST00000374690	NM_000044.3	616	cGt/cAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106158447	106158447	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			701	137	472	0	ENST00000380013.4:c.3353del	p.Asn1118IlefsTer19	p.N1118Ifs*19	ENST00000380013	NM_001127208.2	1116	atA/at																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753988	57753988	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	144	438	1	ENST00000274289.3:c.636del	p.Phe212LeufsTer8	p.F212Lfs*8	ENST00000274289	NM_006622.3	212	ttT/tt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637165	176637168	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	131	413	0	ENST00000439151.2:c.1766_1769del	p.Ser589TyrfsTer9	p.S589Yfs*9	ENST00000439151	NM_022455.4	589	TCTTta/ta																																																																														
NBN	4683	MSKCC	GRCh37	8	90965665	90965666	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			827	174	704	0	ENST00000265433.3:c.1651dupA	p.Arg551LysfsTer5	p.R551Kfs*5	ENST00000265433	NM_002485.4	551	agg/aAgg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	475164	475164	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			638	125	604	0	ENST00000399788.2:c.473del	p.Leu158Ter	p.L158*	ENST00000399788	NM_001042603.1	158	tTg/tg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289665	15289665	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	105	626	0	ENST00000263388.2:c.3806del	p.Gly1269ValfsTer3	p.G1269Vfs*3	ENST00000263388	NM_000435.2	1269	gGt/gt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39937164	39937164	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			733	173	727	0	ENST00000378444.4:c.19del	p.Leu7CysfsTer9	p.L7Cfs*9	ENST00000378444	NM_001123385.1	7	Ctg/tg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929383	44929385	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0001703-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1050	67	693	0	ENST00000377967.4:c.2485_2487del	p.Ser829del	p.S829del	ENST00000377967	NM_021140.2	828	cCTTct/cct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001709-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	37	273	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001709-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	91	382	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001709-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	91	382	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001709-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	91	382	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
BRAF	673	MSKCC	GRCh37	7	140624411	140624420	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCCGGCG	GGCGCCGGCG	-			P-0001709-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	34	122	0	ENST00000288602.6:c.84_93del	p.Gly30ProfsTer21	p.G30Pfs*21	ENST00000288602	NM_004333.4	28	ggCGCCGGCGCC/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578491	7578491	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001709-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	45	491	0	ENST00000269305.4:c.439delG	p.Val147LeufsTer23	p.V147Lfs*23	ENST00000269305	NM_001126112.2	147	Gtt/tt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	277	458	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	55	265	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112175930	112175930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	33	343	0	ENST00000257430.4:c.4639G>A	p.Glu1547Lys	p.E1547K	ENST00000257430	NM_000038.5	1547	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112176526	112176526	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	29	427	0	ENST00000257430.4:c.5235G>C	p.Lys1745Asn	p.K1745N	ENST00000257430	NM_000038.5	1745	aaG/aaC																																																																														
APC	324	MSKCC	GRCh37	5	112176587	112176587	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	37	433	0	ENST00000257430.4:c.5296G>C	p.Asp1766His	p.D1766H	ENST00000257430	NM_000038.5	1766	Gat/Cat																																																																														
APC	324	MSKCC	GRCh37	5	112176601	112176601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	34	471	0	ENST00000257430.4:c.5310G>C	p.Lys1770Asn	p.K1770N	ENST00000257430	NM_000038.5	1770	aaG/aaC																																																																														
APC	324	MSKCC	GRCh37	5	112176660	112176660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	51	546	0	ENST00000257430.4:c.5369G>C	p.Arg1790Thr	p.R1790T	ENST00000257430	NM_000038.5	1790	aGa/aCa																																																																														
APC	324	MSKCC	GRCh37	5	112176699	112176699	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	47	476	0	ENST00000257430.4:c.5408G>C	p.Arg1803Thr	p.R1803T	ENST00000257430	NM_000038.5	1803	aGa/aCa																																																																														
APC	324	MSKCC	GRCh37	5	112176719	112176719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	37	418	1	ENST00000257430.4:c.5428G>T	p.Asp1810Tyr	p.D1810Y	ENST00000257430	NM_000038.5	1810	Gat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112176812	112176812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	28	467	0	ENST00000257430.4:c.5521G>C	p.Asp1841His	p.D1841H	ENST00000257430	NM_000038.5	1841	Gat/Cat																																																																														
APC	324	MSKCC	GRCh37	5	112176839	112176839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	38	492	0	ENST00000257430.4:c.5548G>A	p.Glu1850Lys	p.E1850K	ENST00000257430	NM_000038.5	1850	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112177115	112177115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	26	559	0	ENST00000257430.4:c.5824G>C	p.Asp1942His	p.D1942H	ENST00000257430	NM_000038.5	1942	Gac/Cac																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508805	106508805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	63	533	0	ENST00000359195.3:c.799G>A	p.Glu267Lys	p.E267K	ENST00000359195	NM_002649.2	267	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298003	15298003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	51	524	0	ENST00000263388.2:c.1753G>A	p.Glu585Lys	p.E585K	ENST00000263388	NM_000435.2	585	Gaa/Aaa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932018	39932018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	60	325	0	ENST00000378444.4:c.2581C>T	p.Arg861Cys	p.R861C	ENST00000378444	NM_001123385.1	861	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175951	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	22	345	0	ENST00000257430.4:c.4660delG	p.Glu1554LysfsTer11	p.E1554Kfs*11	ENST00000257430	NM_000038.5	1554	Gaa/aa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	684	459	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	179	181	0				ENST00000310581	NM_198253.2																																																																																
PARP1	142	MSKCC	GRCh37	1	226573297	226573297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1232	95	463	0	ENST00000366794.5:c.919G>A	p.Asp307Asn	p.D307N	ENST00000366794	NM_001618.3	307	Gat/Aat																																																																														
CUL3	8452	MSKCC	GRCh37	2	225379489	225379489	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			855	74	327	0	ENST00000264414.4:c.379G>A	p.Asp127Asn	p.D127N	ENST00000264414	NM_003590.4	127	Gac/Aac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259241	89259241	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201357801		P-0001759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	371	433	0	ENST00000336596.2:c.385G>A	p.Asp129Asn	p.D129N	ENST00000336596	NM_005233.5	129	Gat/Aat																																																																														
ETV1	2115	MSKCC	GRCh37	7	14017064	14017064	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			907	273	295	0	ENST00000405192.2:c.223C>G	p.Gln75Glu	p.Q75E	ENST00000405192	NM_001163147.1	75	Cag/Gag																																																																														
TET1	80312	MSKCC	GRCh37	10	70412313	70412313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			816	415	517	0	ENST00000373644.4:c.4423G>C	p.Glu1475Gln	p.E1475Q	ENST00000373644	NM_030625.2	1475	Gaa/Caa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134691	2134691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	168	275	0	ENST00000219476.3:c.4468G>C	p.Glu1490Gln	p.E1490Q	ENST00000219476	NM_000548.3	1490	Gag/Cag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215930	41215930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	351	514	1	ENST00000357654.3:c.5113C>G	p.Leu1705Val	p.L1705V	ENST00000357654	NM_007294.3	1705	Cta/Gta																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53241055	53241055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	470	640	0	ENST00000375401.3:c.1156G>C	p.Glu386Gln	p.E386Q	ENST00000375401	NM_004187.3	386	Gag/Cag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225379349	225379350	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0001759-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1140	71	507	0	ENST00000264414.4:c.518_519delinsAA	p.Arg173Gln	p.R173Q	ENST00000264414	NM_003590.4	173	cGG/cAA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0001764-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	359	602	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
REL	5966	MSKCC	GRCh37	2	61147590	61147590	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001764-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			104	34	114	0	ENST00000295025.8:c.995C>G	p.Ala332Gly	p.A332G	ENST00000295025	NM_002908.2	332	gCc/gGc																																																																														
KIT	3815	MSKCC	GRCh37	4	55564521	55564521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001764-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	62	586	0	ENST00000288135.5:c.409C>A	p.Pro137Thr	p.P137T	ENST00000288135	NM_000222.2	137	Cct/Act																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63759943	63759943	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001764-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			612	75	475	0	ENST00000279873.7:c.596C>G	p.Ser199Cys	p.S199C	ENST00000279873	NM_032199.2	199	tCt/tGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971160	21971165	+	inframe_deletion	In_Frame_Del	DEL	GTGGAG	GTGGAG	-			P-0001764-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	88	174	0	ENST00000304494.5:c.193_198delCTCCAC	p.Leu65_His66del	p.L65_H66del	ENST00000304494	NM_000077.4	65	CTCCAC/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971160	21971165	+	inframe_deletion	In_Frame_Del	DEL	GTGGAG	GTGGAG	-			P-0001764-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	88	174	0	ENST00000304494.5:c.193_198delCTCCAC	p.Leu65_His66del	p.L65_H66del	ENST00000304494	NM_000077.4	65	CTCCAC/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971160	21971165	+	inframe_deletion	In_Frame_Del	DEL	GTGGAG	GTGGAG	-			P-0001764-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	88	174	0	ENST00000304494.5:c.193_198delCTCCAC	p.Leu65_His66del	p.L65_H66del	ENST00000304494	NM_000077.4	65	CTCCAC/-																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	417	335	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			39	49	157	0				ENST00000310581	NM_198253.2																																																																																
PIK3CB	5291	MSKCC	GRCh37	3	138374244	138374244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	132	390	0	ENST00000289153.2:c.3200A>T	p.Asp1067Val	p.D1067V	ENST00000289153	NM_006219.2	1067	gAc/gTc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193121548	193121548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			746	299	345	0	ENST00000367435.3:c.946C>T	p.His316Tyr	p.H316Y	ENST00000367435	NM_024529.4	316	Cat/Tat																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693886	47693886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	224	432	0	ENST00000233146.2:c.1600C>T	p.Arg534Cys	p.R534C	ENST00000233146	NM_000251.2	534	Cgt/Tgt																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119642237	119642237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	134	348	0	ENST00000316626.5:c.460C>T	p.Pro154Ser	p.P154S	ENST00000316626		154	Cct/Tct																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672149	30672149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	66	344	0	ENST00000376406.3:c.4811C>T	p.Ser1604Phe	p.S1604F	ENST00000376406	NM_014641.2	1604	tCc/tTc																																																																														
MET	4233	MSKCC	GRCh37	7	116403120	116403120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	280	343	0	ENST00000397752.3:c.2381C>T	p.Ser794Phe	p.S794F	ENST00000397752	NM_000245.2	794	tCt/tTt																																																																														
CBL	867	MSKCC	GRCh37	11	119156008	119156008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	138	456	0	ENST00000264033.4:c.1673C>T	p.Ser558Phe	p.S558F	ENST00000264033	NM_005188.3	558	tCc/tTc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145431	58145431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	438	315	0	ENST00000257904.6:c.70C>T	p.Arg24Cys	p.R24C	ENST00000257904	NM_000075.3	24	Cgt/Tgt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636182	28636182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	90	318	0	ENST00000241453.7:c.190G>A	p.Gly64Arg	p.G64R	ENST00000241453	NM_004119.2	64	Ggg/Agg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670433	88670433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	219	332	0	ENST00000360948.2:c.1253C>T	p.Pro418Leu	p.P418L	ENST00000360948	NM_001012338.2	418	cCt/cTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892205	9892205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	95	427	0	ENST00000330684.3:c.2285G>A	p.Gly762Glu	p.G762E	ENST00000330684	NM_001134407.1	762	gGa/gAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435653	56435653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	75	199	0	ENST00000407977.2:c.1484C>T	p.Ser495Phe	p.S495F	ENST00000407977		495	tCt/tTt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354124	15354124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001773-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			10	102	104	0	ENST00000263377.2:c.2756C>T	p.Pro919Leu	p.P919L	ENST00000263377	NM_058243.2	919	cCt/cTt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11300550	11300550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	81	413	0	ENST00000361445.4:c.1596G>C	p.Lys532Asn	p.K532N	ENST00000361445	NM_004958.3	532	aaG/aaC																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518315	204518315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	113	472	0	ENST00000367182.3:c.978G>C	p.Leu326Phe	p.L326F	ENST00000367182	NM_001278516.1	326	ttG/ttC																																																																														
XPO1	7514	MSKCC	GRCh37	2	61725918	61725918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	524	418	0	ENST00000401558.2:c.649C>G	p.Gln217Glu	p.Q217E	ENST00000401558	NM_003400.3	217	Caa/Gaa																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881409	111881409	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	408	403	0	ENST00000393256.3:c.87A>T	p.Arg29Ser	p.R29S	ENST00000393256	NM_006538.4	29	agA/agT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			568	4970	227	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	80	149	0				ENST00000310581	NM_198253.2																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157528276	157528276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	102	337	0	ENST00000346085.5:c.6001G>A	p.Glu2001Lys	p.E2001K	ENST00000346085	NM_020732.3	2001	Gag/Aag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126756	5126756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	105	336	0	ENST00000381652.3:c.3364C>T	p.Arg1122Ter	p.R1122*	ENST00000381652	NM_004972.3	1122	Cga/Tga																																																																														
ETV6	2120	MSKCC	GRCh37	12	12038859	12038859	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			658	153	436	0	ENST00000396373.4:c.1153-1G>A		p.X385_splice	ENST00000396373	NM_001987.4	385																																																																															
FLT3	2322	MSKCC	GRCh37	13	28597498	28597498	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	78	503	0	ENST00000241453.7:c.2407G>C	p.Glu803Gln	p.E803Q	ENST00000241453	NM_004119.2	803	Gaa/Caa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99192845	99192845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	391	339	0	ENST00000268035.6:c.35C>T	p.Ser12Leu	p.S12L	ENST00000268035	NM_000875.3	12	tCg/tTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274169	10274169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	77	298	0	ENST00000330684.3:c.100C>G	p.Leu34Val	p.L34V	ENST00000330684	NM_001134407.1	34	Cta/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			103	204	377	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66523994	66523994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	97	265	0	ENST00000358598.2:c.722G>A	p.Arg241Lys	p.R241K	ENST00000358598	NM_212471.2	241	aGa/aAa																																																																														
INSR	3643	MSKCC	GRCh37	19	7143073	7143073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	54	270	0	ENST00000302850.5:c.2296G>A	p.Asp766Asn	p.D766N	ENST00000302850	NM_000208.2	766	Gat/Aat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271774	15271774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	33	274	0	ENST00000263388.2:c.6665C>T	p.Pro2222Leu	p.P2222L	ENST00000263388	NM_000435.2	2222	cCg/cTg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52719914	52719914	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1147	69	354	0	ENST00000322088.6:c.1126G>A	p.Glu376Lys	p.E376K	ENST00000322088	NM_014225.5	376	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41551013	41551013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	345	402	0	ENST00000263253.7:c.3157G>A	p.Glu1053Lys	p.E1053K	ENST00000263253	NM_001429.3	1053	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41573896	41573896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001805-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			666	86	392	0	ENST00000263253.7:c.6181C>A	p.Pro2061Thr	p.P2061T	ENST00000263253	NM_001429.3	2061	Ccc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	262	702	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857784	9857784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145861983		P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	260	727	0	ENST00000330684.3:c.3617G>A	p.Arg1206Gln	p.R1206Q	ENST00000330684	NM_001134407.1	1206	cGa/cAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967065	25967065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	298	608	0	ENST00000435504.4:c.2141G>T	p.Ser714Ile	p.S714I	ENST00000435504		714	aGt/aTt																																																																														
ALK	238	MSKCC	GRCh37	2	29498275	29498275	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	162	465	0	ENST00000389048.3:c.1905C>A	p.Tyr635Ter	p.Y635*	ENST00000389048	NM_004304.4	635	taC/taA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566718	212566718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	243	605	0	ENST00000342788.4:c.1463G>T	p.Arg488Leu	p.R488L	ENST00000342788	NM_005235.2	488	cGg/cTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	135	596	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217236	66217236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	309	554	0	ENST00000273854.3:c.2379C>A	p.Asp793Glu	p.D793E	ENST00000273854	NM_004439.5	793	gaC/gaA																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56111651	56111651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	49	117	0	ENST00000399503.3:c.251C>T	p.Pro84Leu	p.P84L	ENST00000399503	NM_005921.1	84	cCg/cTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389366	8389366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	199	660	0	ENST00000356435.5:c.4252G>T	p.Gly1418Trp	p.G1418W	ENST00000356435		1418	Ggg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	70	105	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	70	105	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	70	105	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109819	115109819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	60	350	0	ENST00000257566.3:c.2059G>C	p.Asp687His	p.D687H	ENST00000257566	NM_016569.3	687	Gac/Cac																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004289	29004289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	172	575	0	ENST00000282397.4:c.1004C>A	p.Thr335Asn	p.T335N	ENST00000282397	NM_002019.4	335	aCt/aAt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81557474	81557474	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			633	139	717	0	ENST00000298171.2:c.454A>G	p.Ile152Val	p.I152V	ENST00000298171	NM_000369.2	152	Ata/Gta																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858060	9858060	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	59	790	0	ENST00000330684.3:c.3341G>C	p.Arg1114Thr	p.R1114T	ENST00000330684	NM_001134407.1	1114	aGa/aCa																																																																														
CD79B	974	MSKCC	GRCh37	17	62007210	62007210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			845	90	510	0	ENST00000392795.3:c.472C>G	p.Leu158Val	p.L158V	ENST00000392795	NM_001039933.1	158	Ctg/Gtg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39637845	39637845	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	47	545	0	ENST00000262039.4:c.2264-2A>T		p.X755_splice	ENST00000262039	NM_002647.2	755																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604710	48604710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			537	128	606	0	ENST00000342988.3:c.1532C>G	p.Pro511Arg	p.P511R	ENST00000342988	NM_005359.5	511	cCg/cGg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610198	10610198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	510	759	0	ENST00000171111.5:c.512G>T	p.Cys171Phe	p.C171F	ENST00000171111	NM_203500.1	171	tGc/tTc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245114	53245114	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	237	732	0	ENST00000375401.3:c.826G>T	p.Glu276Ter	p.E276*	ENST00000375401	NM_004187.3	276	Gag/Tag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200274	123200274	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			808	211	756	0	ENST00000218089.9:c.2253C>G	p.Ser751Arg	p.S751R	ENST00000218089	NM_001042749.1	751	agC/agG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101557	27101558	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0001836-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	131	709	0	ENST00000324856.7:c.4839_4840delinsTT	p.Met1613_Gln1614delinsIleTer	p.M1613_Q1614delinsI*	ENST00000324856	NM_006015.4	1613	atGCag/atTTag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0001841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	236	239	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			932	840	731	0	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213837	66213837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	591	944	0	ENST00000273854.3:c.2593G>A	p.Gly865Arg	p.G865R	ENST00000273854	NM_004439.5	865	Gga/Aga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539927	187539927	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			492	428	577	0	ENST00000441802.2:c.7813A>C	p.Ile2605Leu	p.I2605L	ENST00000441802	NM_005245.3	2605	Atc/Ctc																																																																														
MET	4233	MSKCC	GRCh37	7	116339680	116339680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1548	226	485	1	ENST00000397752.3:c.542G>A	p.Gly181Glu	p.G181E	ENST00000397752	NM_000245.2	181	gGa/gAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680680	88680680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	364	625	0	ENST00000360948.2:c.577G>A	p.Asp193Asn	p.D193N	ENST00000360948	NM_001012338.2	193	Gat/Aat																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2225401	2225401	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			652	499	617	1	ENST00000398665.3:c.3611T>A	p.Ile1204Asn	p.I1204N	ENST00000398665	NM_032482.2	1204	aTt/aAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0001841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			570	1189	627	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001866-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	53	601	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001866-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	47	183	0				ENST00000310581	NM_198253.2																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118307254	118307254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001866-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			59	25	76	0	ENST00000534358.1:c.27C>A	p.Phe9Leu	p.F9L	ENST00000534358	NM_005933.3	9	ttC/ttA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307502	118307502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001866-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	53	469	0	ENST00000534358.1:c.275C>T	p.Ser92Leu	p.S92L	ENST00000534358	NM_005933.3	92	tCg/tTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307508	118307508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001866-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	58	491	0	ENST00000534358.1:c.281C>T	p.Ser94Leu	p.S94L	ENST00000534358	NM_005933.3	94	tCg/tTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001904-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			87	63	215	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001904-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			202	219	488	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001904-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			451	40	492	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001904-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			298	218	470	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638026	176638026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001904-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			231	192	386	0	ENST00000439151.2:c.2626G>A	p.Val876Ile	p.V876I	ENST00000439151	NM_022455.4	876	Gtc/Atc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928992	44928993	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001904-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			249	262	723	0	ENST00000377967.4:c.2093dup	p.His698GlnfsTer32	p.H698Qfs*32	ENST00000377967	NM_021140.2	698	cac/cAac																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209513	98209513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001904-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			177	55	373	2	ENST00000331920.6:c.4025G>T	p.Arg1342Leu	p.R1342L	ENST00000331920	NM_000264.3	1342	cGc/cTc																																																																														
RAD51	5888	MSKCC	GRCh37	15	40990990	40990990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001904-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			693	109	608	0	ENST00000267868.3:c.34G>C	p.Asp12His	p.D12H	ENST00000267868	NM_002875.4	12	Gat/Cat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860394	151860396	+	frameshift_variant	Frame_Shift_Del	DEL	CTT	CTT	AG			P-0001904-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			310	53	406	0	ENST00000262189.6:c.10266_10268delinsCT	p.Gln3422HisfsTer2	p.Q3422Hfs*2	ENST00000262189	NM_170606.2	3422	caAAGa/caCTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453134	140453136	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0001963-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	190	377	0	ENST00000288602.6:c.1799_1801del	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	600	gTGAaa/gaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002002-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	68	525	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002002-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			23	21	153	0				ENST00000310581	NM_198253.2																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25470480	25470480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002002-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			75	46	598	0	ENST00000264709.3:c.994G>A	p.Gly332Arg	p.G332R	ENST00000264709	NM_175629.2	332	Gga/Aga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184126	123184137	+	inframe_deletion	In_Frame_Del	DEL	TTTAAAATATGT	TTTAAAATATGT	-			P-0002002-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			93	69	697	0	ENST00000218089.9:c.985_996del	p.Leu329_Val332del	p.L329_V332del	ENST00000218089	NM_001042749.1	328	taTTTAAAATATGTt/tat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	558	474	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295243	1295243	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs35550267		P-0002018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			10	359	158	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295242	1295242	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0002018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			12	345	152	0				ENST00000310581	NM_198253.2																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123245021	123245021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	218	440	0	ENST00000358487.5:c.2083G>A	p.Glu695Lys	p.E695K	ENST00000358487	NM_000141.4	695	Gag/Aag																																																																														
CBL	867	MSKCC	GRCh37	11	119144588	119144588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	245	480	0	ENST00000264033.4:c.601C>T	p.Pro201Ser	p.P201S	ENST00000264033	NM_005188.3	201	Cct/Tct																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288281	21288281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	576	594	0	ENST00000354336.3:c.526C>T	p.Pro176Ser	p.P176S	ENST00000354336	NM_005207.3	176	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0002021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	295	382	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678508	88678508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183806623		P-0002021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	108	312	0	ENST00000360948.2:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000360948	NM_001012338.2	343	cGg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971087	21971087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	204	208	0	ENST00000304494.5:c.271del	p.Leu91TrpfsTer55	p.L91Wfs*55	ENST00000304494	NM_000077.4	91	Ctg/tg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971087	21971087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	204	208	0	ENST00000304494.5:c.271del	p.Leu91TrpfsTer55	p.L91Wfs*55	ENST00000304494	NM_000077.4	91	Ctg/tg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971087	21971087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	204	208	0	ENST00000304494.5:c.271del	p.Leu91TrpfsTer55	p.L91Wfs*55	ENST00000304494	NM_000077.4	91	Ctg/tg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	11	122	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			783	61	389	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	28	352	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463191	25463191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			711	52	378	1	ENST00000264709.3:c.2302G>A	p.Asp768Asn	p.D768N	ENST00000264709	NM_175629.2	768	Gac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941859	44941862	+	frameshift_variant	Frame_Shift_Del	DEL	AGAT	AGAT	-			P-0002029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			633	86	281	0	ENST00000377967.4:c.3185_3188delATAG	p.Asp1062ValfsTer20	p.D1062Vfs*20	ENST00000377967	NM_021140.2	1061	tcAGAT/tc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	100	279	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	100	279	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	100	279	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	143	383	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371749	55371749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	110	222	1	ENST00000297316.4:c.439C>T	p.Arg147Trp	p.R147W	ENST00000297316	NM_022454.3	147	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432722	49432722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	33	268	0	ENST00000301067.7:c.8417G>C	p.Gly2806Ala	p.G2806A	ENST00000301067	NM_003482.3	2806	gGg/gCg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954605	17954605	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			788	86	357	0	ENST00000458235.1:c.289G>C	p.Val97Leu	p.V97L	ENST00000458235	NM_000215.3	97	Gtc/Ctc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	333	479	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0002068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	109	191	0				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9858356	9858356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	94	351	0	ENST00000330684.3:c.3045G>T	p.Lys1015Asn	p.K1015N	ENST00000330684	NM_001134407.1	1015	aaG/aaT																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480538	123480538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	86	404	0	ENST00000371139.4:c.46G>A	p.Gly16Ser	p.G16S	ENST00000371139	NM_001114937.2	16	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AA			P-0002068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	129	398	0	ENST00000257430.4:c.2804_2805insAA	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAAac																																																																														
APC	324	MSKCC	GRCh37	5	112175779	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGATGGA	TCCAGATGGA	-			P-0002068-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	118	359	0	ENST00000257430.4:c.4489_4498del	p.Pro1497PhefsTer7	p.P1497Ffs*7	ENST00000257430	NM_000038.5	1496	acTCCAGATGGA/ac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	37	165	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	264	268	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532867	187532867	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	374	394	0	ENST00000441802.2:c.9526G>T	p.Glu3176Ter	p.E3176*	ENST00000441802	NM_005245.3	3176	Gaa/Taa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405608	139405608	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	87	334	0	ENST00000277541.6:c.2583G>A	p.Trp861Ter	p.W861*	ENST00000277541	NM_017617.3	861	tgG/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0002076-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	124	159	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0002076-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	300	519	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289269	33289269	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002076-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	283	263	0	ENST00000374542.5:c.283G>C	p.Ala95Pro	p.A95P	ENST00000374542	NM_001141970.1	95	Gcc/Ccc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20148726	20148726	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002076-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	228	420	0	ENST00000379607.5:c.338-1G>A		p.X113_splice	ENST00000379607	NM_001412.3	113																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400056	139400063	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTAGTC	CTGTAGTC	T			P-0002076-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	150	300	0	ENST00000277541.6:c.4285_4292delinsA	p.Asp1429ThrfsTer14	p.D1429Tfs*14	ENST00000277541	NM_017617.3	1429	GACTACAGc/Ac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	25	108	0				ENST00000310581	NM_198253.2																																																																																
SPEN	23013	MSKCC	GRCh37	1	16262087	16262087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	73	129	0	ENST00000375759.3:c.9352C>T	p.His3118Tyr	p.H3118Y	ENST00000375759	NM_015001.2	3118	Cac/Tac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527778	157527778	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	67	260	0	ENST00000346085.5:c.5503G>C	p.Glu1835Gln	p.E1835Q	ENST00000346085	NM_020732.3	1835	Gag/Cag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527847	157527847	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	75	321	0	ENST00000346085.5:c.5572G>C	p.Glu1858Gln	p.E1858Q	ENST00000346085	NM_020732.3	1858	Gag/Cag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459551	50459551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	110	245	2	ENST00000331340.3:c.840G>T	p.Gln280His	p.Q280H	ENST00000331340	NM_006060.4	280	caG/caT																																																																														
SMO	6608	MSKCC	GRCh37	7	128852042	128852042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	298	438	0	ENST00000249373.3:c.2114C>T	p.Pro705Leu	p.P705L	ENST00000249373	NM_005631.4	705	cCt/cTt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135801105	135801105	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	151	294	0	ENST00000298552.3:c.232G>T	p.Glu78Ter	p.E78*	ENST00000298552	NM_001162426.1	78	Gaa/Taa																																																																														
YES1	7525	MSKCC	GRCh37	18	745837	745837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	88	499	0	ENST00000314574.4:c.595C>T	p.Arg199Cys	p.R199C	ENST00000314574	NM_005433.3	199	Cgt/Tgt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271969	18271969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	56	98	0	ENST00000222254.8:c.572C>T	p.Ser191Leu	p.S191L	ENST00000222254	NM_005027.3	191	tCg/tTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044466	47044466	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	253	182	0	ENST00000329236.7:c.1729A>G	p.Met577Val	p.M577V	ENST00000329236	NM_001204466.1	577	Atg/Gtg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	133	306	0	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	133	306	0	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0002109-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			113	11	46	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002109-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			650	84	481	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002109-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			822	183	492	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699369	47699369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002109-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1224	224	557	0	ENST00000347630.2:c.139G>A	p.Glu47Lys	p.E47K	ENST00000347630	NM_001007230.1	47	Gaa/Aaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157510805	157510806	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002109-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			897	260	537	0	ENST00000346085.5:c.3586dup	p.Gln1196ProfsTer14	p.Q1196Pfs*14	ENST00000346085	NM_020732.3	1194	acc/aCcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002141-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	263	320	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002141-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			75	41	78	0				ENST00000310581	NM_198253.2																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31024290	31024290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002141-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	117	406	0	ENST00000375687.4:c.3775C>G	p.Pro1259Ala	p.P1259A	ENST00000375687	NM_015338.5	1259	Cca/Gca																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044973	47044986	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTTCCCCAGCAA	CAGTTCCCCAGCAA	-			P-0002141-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			83	232	188	0	ENST00000329236.7:c.2065_2078del	p.Gln689ArgfsTer18	p.Q689Rfs*18	ENST00000329236	NM_001204466.1	689	CAGTTCCCCAGCAAa/a																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002145-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	49	63	0				ENST00000310581	NM_198253.2																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78866552	78866552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002145-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	281	349	0	ENST00000306801.3:c.2125C>G	p.Arg709Gly	p.R709G	ENST00000306801	NM_020761.2	709	Cga/Gga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302313	15302313	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002145-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	252	366	0	ENST00000263388.2:c.958A>G	p.Thr320Ala	p.T320A	ENST00000263388	NM_000435.2	320	Aca/Gca																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518261	204518261	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1098	193	478	0	ENST00000367182.3:c.924A>T	p.Glu308Asp	p.E308D	ENST00000367182	NM_001278516.1	308	gaA/gaT																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505492	25505492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			978	257	567	1	ENST00000264709.3:c.266C>G	p.Pro89Arg	p.P89R	ENST00000264709	NM_175629.2	89	cCc/cGc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25994400	25994400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			947	242	505	0	ENST00000435504.4:c.413C>A	p.Ser138Tyr	p.S138Y	ENST00000435504		138	tCc/tAc																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158719	26158719	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	48	148	0	ENST00000289316.2:c.322G>C	p.Ala108Pro	p.A108P	ENST00000289316	NM_138720.2	108	Gcc/Ccc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946195	13946195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			817	168	392	0	ENST00000405192.2:c.901C>T	p.Arg301Trp	p.R301W	ENST00000405192	NM_001163147.1	301	Cgg/Tgg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468045	50468045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	143	342	0	ENST00000331340.3:c.1280C>T	p.Ser427Leu	p.S427L	ENST00000331340	NM_006060.4	427	tCg/tTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81386575	81386575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1079	315	550	0	ENST00000222390.5:c.412G>T	p.Gly138Ter	p.G138*	ENST00000222390	NM_000601.4	138	Gga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151917668	151917668	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	136	240	0	ENST00000262189.6:c.3652C>G	p.Gln1218Glu	p.Q1218E	ENST00000262189	NM_170606.2	1218	Cag/Gag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499832	8499832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			767	207	467	0	ENST00000356435.5:c.2137G>T	p.Gly713Cys	p.G713C	ENST00000356435		713	Ggt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	127	192	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	127	192	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	127	192	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
WT1	7490	MSKCC	GRCh37	11	32456810	32456810	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	97	205	0	ENST00000332351.3:c.82C>A	p.Pro28Thr	p.P28T	ENST00000332351	NM_024426.4	28	Cca/Aca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912252	32912252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			867	134	491	0	ENST00000380152.3:c.3760G>A	p.Glu1254Lys	p.E1254K	ENST00000380152		1254	Gag/Aag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138048	2138048	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	225	376	0	ENST00000219476.3:c.5069-1G>C		p.X1690_splice	ENST00000219476	NM_000548.3	1690																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778472	3778472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	239	494	0	ENST00000262367.5:c.6576G>A	p.Met2192Ile	p.M2192I	ENST00000262367	NM_004380.2	2192	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	217	412	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
NF1	4763	MSKCC	GRCh37	17	29509683	29509683	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			761	215	373	0	ENST00000358273.4:c.888G>C	p.Lys296Asn	p.K296N	ENST00000358273	NM_001042492.2	296	aaG/aaC																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226474	41226474	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1012	306	509	0	ENST00000357654.3:c.4549C>G	p.Leu1517Val	p.L1517V	ENST00000357654	NM_007294.3	1517	Ctt/Gtt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034482	47034482	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			930	121	497	0	ENST00000329236.7:c.336A>T	p.Glu112Asp	p.E112D	ENST00000329236	NM_001204466.1	112	gaA/gaT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038529	47038529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			861	150	597	0	ENST00000329236.7:c.460G>T	p.Glu154Ter	p.E154*	ENST00000329236	NM_001204466.1	154	Gag/Tag																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652285	48652285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1052	127	633	0	ENST00000376670.3:c.956C>G	p.Ser319Cys	p.S319C	ENST00000376670	NM_002049.3	319	tCc/tGc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688743	47688744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCG			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1133	274	469	0	ENST00000347630.2:c.553_556dup	p.Leu186ProfsTer5	p.L186Pfs*5	ENST00000347630	NM_001007230.1	186	ctg/cCGGCtg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602290	10602306	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGACGGCATAGATG	CGCCGACGGCATAGATG	-			P-0002163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	158	404	0	ENST00000171111.5:c.1272_1288del	p.His424GlnfsTer15	p.H424Qfs*15	ENST00000171111	NM_203500.1	424	caCATCTATGCCGTCGGCGgc/cagc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	128	130	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0002166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	225	186	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	410	162	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972916	25972916	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	353	383	0	ENST00000435504.4:c.1509G>C	p.Lys503Asn	p.K503N	ENST00000435504		503	aaG/aaC																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3827617	3827617	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	355	373	0	ENST00000262367.5:c.2155C>T	p.Gln719Ter	p.Q719*	ENST00000262367	NM_004380.2	719	Caa/Taa																																																																														
EP300	2033	MSKCC	GRCh37	22	41565532	41565532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	449	464	0	ENST00000263253.7:c.4198A>T	p.Ser1400Cys	p.S1400C	ENST00000263253	NM_001429.3	1400	Agt/Tgt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44894169	44894177	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTGCAGCA	CTTGCAGCA	-			P-0002166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	591	274	1	ENST00000377967.4:c.565-7_566delCTTGCAGCA		p.X189_splice	ENST00000377967	NM_021140.2	189																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039356	47039358	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0002166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			153	399	242	0	ENST00000329236.7:c.754_756del	p.Ser252del	p.S252del	ENST00000329236	NM_001204466.1	250	TCC/-																																																																														
STAG2	10735	MSKCC	GRCh37	X	123199759	123199760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0002166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			113	448	221	0	ENST00000218089.9:c.2059_2060insCA	p.Val687AlafsTer6	p.V687Afs*6	ENST00000218089	NM_001042749.1	687	gta/gCAta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	51	195	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	70	239	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			485	142	299	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120502080	120502080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			706	76	316	0	ENST00000256646.2:c.1961G>T	p.Cys654Phe	p.C654F	ENST00000256646	NM_024408.3	654	tGt/tTt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533841	63533841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	60	313	0	ENST00000307078.5:c.1313T>C	p.Ile438Thr	p.I438T	ENST00000307078	NM_004655.3	438	aTa/aCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584728	187584743	+	frameshift_variant	Frame_Shift_Del	DEL	GTCGATTCACGGTCCA	GTCGATTCACGGTCCA	-			P-0002185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	60	337	0	ENST00000441802.2:c.3290_3305delTGGACCGTGAATCGAC	p.Leu1097ProfsTer6	p.L1097Pfs*6	ENST00000441802	NM_005245.3	1097	cTGGACCGTGAATCGACc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057682	27057682	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1038	572	472	0	ENST00000324856.7:c.1390C>T	p.Gln464Ter	p.Q464*	ENST00000324856	NM_006015.4	464	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100871	27100871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			971	218	321	0	ENST00000324856.7:c.4153G>A	p.Glu1385Lys	p.E1385K	ENST00000324856	NM_006015.4	1385	Gaa/Aaa																																																																														
MPL	4352	MSKCC	GRCh37	1	43814544	43814544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			850	187	269	0	ENST00000372470.3:c.1339G>A	p.Gly447Arg	p.G447R	ENST00000372470	NM_005373.2	447	Ggg/Agg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731205	162731205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			964	175	326	0	ENST00000367921.3:c.1060G>A	p.Asp354Asn	p.D354N	ENST00000367921	NM_006182.2	354	Gat/Aat																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018218	48018218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			911	176	272	0	ENST00000234420.5:c.413C>T	p.Pro138Leu	p.P138L	ENST00000234420	NM_000179.2	138	cCa/cTa																																																																														
ATR	545	MSKCC	GRCh37	3	142232468	142232468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			882	180	242	0	ENST00000350721.4:c.4516C>T	p.Leu1506Phe	p.L1506F	ENST00000350721	NM_001184.3	1506	Ctt/Ttt																																																																														
ATR	545	MSKCC	GRCh37	3	142286983	142286983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			978	174	326	0	ENST00000350721.4:c.73G>A	p.Glu25Lys	p.E25K	ENST00000350721	NM_001184.3	25	Gaa/Aaa																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430396	181430396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1413	210	366	0	ENST00000325404.1:c.248C>T	p.Ser83Leu	p.S83L	ENST00000325404	NM_003106.3	83	tCg/tTg																																																																														
BCL6	604	MSKCC	GRCh37	3	187444632	187444632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1106	156	235	0	ENST00000232014.4:c.1595C>T	p.Ser532Leu	p.S532L	ENST00000232014	NM_001130845.1	532	tCa/tTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247207	153247207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			604	85	377	0	ENST00000281708.4:c.1595C>T	p.Thr532Ile	p.T532I	ENST00000281708	NM_033632.3	532	aCc/aTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	562	148	0				ENST00000310581	NM_198253.2																																																																																
TNFAIP3	7128	MSKCC	GRCh37	6	138199744	138199744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			833	242	361	0	ENST00000237289.4:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000237289	NM_001270507.1	388	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875060	151875060	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	126	120	0	ENST00000262189.6:c.7478C>G	p.Pro2493Arg	p.P2493R	ENST00000262189	NM_170606.2	2493	cCg/cGg																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538982	23538982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	240	352	0	ENST00000380871.4:c.457G>A	p.Glu153Lys	p.E153K	ENST00000380871	NM_006167.3	153	Gaa/Aaa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372080	55372080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	76	126	0	ENST00000297316.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000297316	NM_022454.3	257	tCg/tTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069964	5069964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	124	364	0	ENST00000381652.3:c.1553C>T	p.Ser518Phe	p.S518F	ENST00000381652	NM_004972.3	518	tCt/tTt																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250088	110250088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			765	145	235	0	ENST00000374672.4:c.587C>T	p.Ser196Leu	p.S196L	ENST00000374672	NM_004235.4	196	tCg/tTg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852095	63852095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	138	209	0	ENST00000279873.7:c.2873C>T	p.Ser958Leu	p.S958L	ENST00000279873	NM_032199.2	958	tCa/tTa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572586	64572586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	238	259	0	ENST00000337652.1:c.1285G>A	p.Glu429Lys	p.E429K	ENST00000337652	NM_130803.2	429	Gag/Aag																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518527	69518527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	133	166	0	ENST00000294312.3:c.118G>A	p.Asp40Asn	p.D40N	ENST00000294312	NM_005117.2	40	Gac/Aac																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022388	12022388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1219	266	420	0	ENST00000396373.4:c.494C>G	p.Ser165Cys	p.S165C	ENST00000396373	NM_001987.4	165	tCc/tGc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125035	46125035	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			904	198	358	0	ENST00000334344.6:c.222A>C	p.Glu74Asp	p.E74D	ENST00000334344	NM_152641.2	74	gaA/gaC																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125060	46125060	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			833	196	316	0	ENST00000334344.6:c.247T>C	p.Ser83Pro	p.S83P	ENST00000334344	NM_152641.2	83	Tct/Cct																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245696	46245696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			954	213	336	0	ENST00000334344.6:c.3790G>A	p.Glu1264Lys	p.E1264K	ENST00000334344	NM_152641.2	1264	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911628	32911628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	74	291	0	ENST00000380152.3:c.3136G>C	p.Glu1046Gln	p.E1046Q	ENST00000380152		1046	Gaa/Caa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911711	32911711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			612	91	282	0	ENST00000380152.3:c.3219G>C	p.Gln1073His	p.Q1073H	ENST00000380152		1073	caG/caC																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912756	32912756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	71	265	0	ENST00000380152.3:c.4264G>C	p.Glu1422Gln	p.E1422Q	ENST00000380152		1422	Gag/Cag																																																																														
RB1	5925	MSKCC	GRCh37	13	49033971	49033971	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			731	304	252	0	ENST00000267163.4:c.2106+2T>A		p.X702_splice	ENST00000267163	NM_000321.2	702																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422112	81422112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			842	204	269	0	ENST00000298171.2:c.88G>A	p.Glu30Lys	p.E30K	ENST00000298171	NM_000369.2	30	Gag/Aag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590677	95590677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1200	237	471	0	ENST00000343455.3:c.1232C>T	p.Ser411Leu	p.S411L	ENST00000343455	NM_177438.2	411	tCa/tTa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16005065	16005065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	140	189	1	ENST00000268712.3:c.2189C>T	p.Ala730Val	p.A730V	ENST00000268712	NM_006311.3	730	gCt/gTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29552170	29552170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			787	117	374	0	ENST00000358273.4:c.1903C>T	p.Pro635Ser	p.P635S	ENST00000358273	NM_001042492.2	635	Cct/Tct																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618602	37618602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			894	179	290	0	ENST00000447079.4:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000447079	NM_015083.1	93	cGa/cAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619040	37619040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			845	201	342	0	ENST00000447079.4:c.716G>C	p.Gly239Ala	p.G239A	ENST00000447079	NM_015083.1	239	gGa/gCa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			753	233	296	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
STK11	6794	MSKCC	GRCh37	19	1223117	1223117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			765	235	323	0	ENST00000326873.7:c.1054G>A	p.Asp352Asn	p.D352N	ENST00000326873	NM_000455.4	352	Gac/Aac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11130342	11130342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			828	257	374	0	ENST00000344626.4:c.2581G>A	p.Glu861Lys	p.E861K	ENST00000344626	NM_003072.3	861	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144143	11144143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	180	284	0	ENST00000344626.4:c.3724G>A	p.Glu1242Lys	p.E1242K	ENST00000344626	NM_003072.3	1242	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			743	223	344	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45873797	45873797	+	start_lost	Translation_Start_Site	SNP	A	A	C			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	202	290	0	ENST00000391945.4:c.2T>G	p.Met1?	p.M1?	ENST00000391945	NM_000400.3	1	aTg/aGg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52693404	52693404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			900	189	269	0	ENST00000322088.6:c.55G>A	p.Glu19Lys	p.E19K	ENST00000322088	NM_014225.5	19	Gaa/Aaa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750363	39750363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1001	158	247	0	ENST00000361337.2:c.1978G>A	p.Asp660Asn	p.D660N	ENST00000361337	NM_003286.2	660	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306689	41306689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1105	176	350	0	ENST00000373198.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000373198	NM_133170.3	324	Gaa/Aaa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044550	47044550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	267	180	0	ENST00000329236.7:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000329236	NM_001204466.1	605	Gag/Aag																																																																														
ARAF	369	MSKCC	GRCh37	X	47426513	47426513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	269	196	0	ENST00000377045.4:c.856G>A	p.Asp286Asn	p.D286N	ENST00000377045	NM_001654.4	286	Gat/Aat																																																																														
MED12	9968	MSKCC	GRCh37	X	70357444	70357444	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			608	245	229	0	ENST00000374080.3:c.5785C>T	p.Gln1929Ter	p.Q1929*	ENST00000374080		1929	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	49039452	49039461	+	frameshift_variant	Frame_Shift_Del	DEL	TATAAAATTT	TATAAAATTT	-			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			947	391	326	0	ENST00000267163.4:c.2437_2446del	p.Tyr813GlnfsTer10	p.Y813Qfs*10	ENST00000267163	NM_000321.2	813	TATAAAATTTca/ca																																																																														
AR	367	MSKCC	GRCh37	X	66765308	66765332	+	stop_gained	Nonsense_Mutation	DEL	ACCTGGTCCTGGATGAGGAACAGCA	ACCTGGTCCTGGATGAGGAACAGCA	G			P-0002186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	207	155	0	ENST00000374690.3:c.320_344delinsG	p.Tyr107_Gln115delinsTer	p.Y107_Q115delins*	ENST00000374690	NM_000044.3	107	tACCTGGTCCTGGATGAGGAACAGCAa/tGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0002189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	93	176	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	160	128	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0002212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	203	527	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	32	104	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	48954210	48954210	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			840	317	421	0	ENST00000267163.4:c.1411C>T	p.Gln471Ter	p.Q471*	ENST00000267163	NM_000321.2	471	Caa/Taa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	205	386	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	165	489	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	157	409	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059264	27059264	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	206	401	0	ENST00000324856.7:c.1901C>G	p.Ser634Ter	p.S634*	ENST00000324856	NM_006015.4	634	tCa/tGa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118368735	118368735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			492	244	365	0	ENST00000534358.1:c.5749G>A	p.Asp1917Asn	p.D1917N	ENST00000534358	NM_005933.3	1917	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431549	49431549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	150	386	0	ENST00000301067.7:c.9590C>T	p.Thr3197Ile	p.T3197I	ENST00000301067	NM_003482.3	3197	aCc/aTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755527	39755527	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	106	351	0	ENST00000288319.7:c.1238C>G	p.Ser413Ter	p.S413*	ENST00000288319	NM_182918.3	413	tCa/tGa																																																																														
NF2	4771	MSKCC	GRCh37	22	30061031	30061031	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			657	120	438	0	ENST00000338641.4:c.863C>G	p.Ser288Ter	p.S288*	ENST00000338641	NM_000268.3	288	tCa/tGa																																																																														
EP300	2033	MSKCC	GRCh37	22	41525914	41525914	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	258	437	0	ENST00000263253.7:c.1189C>T	p.Arg397Ter	p.R397*	ENST00000263253	NM_001429.3	397	Cga/Tga																																																																														
XIAP	331	MSKCC	GRCh37	X	123020251	123020251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	337	255	0	ENST00000355640.3:c.739G>A	p.Asp247Asn	p.D247N	ENST00000355640		247	Gat/Aat																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651942	36651942	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	158	331	0	ENST00000244741.5:c.65delT	p.Phe22SerfsTer9	p.F22Sfs*9	ENST00000244741	NM_000389.4	22	Ttc/tc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	59	92	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			877	414	382	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			947	225	483	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
IL10	3586	MSKCC	GRCh37	1	206941988	206941988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			671	279	280	0	ENST00000423557.1:c.530G>A	p.Arg177Gln	p.R177Q	ENST00000423557	NM_000572.2	177	cGa/cAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26029126	26029126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			975	201	458	0	ENST00000435504.4:c.224C>T	p.Pro75Leu	p.P75L	ENST00000435504		75	cCa/cTa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167830	185167830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			710	314	417	0	ENST00000265026.3:c.1153C>T	p.Leu385Phe	p.L385F	ENST00000265026	NM_004721.4	385	Ctt/Ttt																																																																														
TP63	8626	MSKCC	GRCh37	3	189612083	189612083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	258	510	0	ENST00000264731.3:c.1835C>T	p.Ser612Phe	p.S612F	ENST00000264731	NM_003722.4	612	tCc/tTc																																																																														
NPM1	4869	MSKCC	GRCh37	5	170827844	170827844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	322	332	0	ENST00000296930.5:c.584C>T	p.Ser195Phe	p.S195F	ENST00000296930	NM_002520.6	195	tCt/tTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246447	46246447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			833	202	457	0	ENST00000334344.6:c.4541C>T	p.Thr1514Ile	p.T1514I	ENST00000334344	NM_152641.2	1514	aCt/aTt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557476	21557476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			825	352	435	4	ENST00000382592.4:c.2369G>A	p.Arg790Gln	p.R790Q	ENST00000382592	NM_014572.2	790	cGa/cAa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986544	36986544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	170	346	0	ENST00000354822.5:c.1145C>T	p.Ser382Phe	p.S382F	ENST00000354822	NM_001079668.2	382	tCc/tTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574426	95574426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	153	183	0	ENST00000343455.3:c.2441C>T	p.Pro814Leu	p.P814L	ENST00000343455	NM_177438.2	814	cCa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579395	7579395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	221	308	0	ENST00000269305.4:c.292C>T	p.Pro98Ser	p.P98S	ENST00000269305	NM_001126112.2	98	Cct/Tct																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5260824	5260824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	158	265	0	ENST00000357368.4:c.587C>T	p.Pro196Leu	p.P196L	ENST00000357368	NM_002850.3	196	cCg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733211	40733211	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	146	298	0	ENST00000373198.4:c.3595C>T	p.Gln1199Ter	p.Q1199*	ENST00000373198	NM_133170.3	1199	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980844	40980844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	157	325	0	ENST00000373198.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000373198	NM_133170.3	548	Gaa/Aaa																																																																														
AR	367	MSKCC	GRCh37	X	66766595	66766595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			687	215	479	0	ENST00000374690.3:c.1607G>A	p.Gly536Glu	p.G536E	ENST00000374690	NM_000044.3	536	gGg/gAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180395	32180396	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0002353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	151	246	0	ENST00000375023.3:c.2535_2536delinsAA	p.Met845_Asp846delinsIleAsn	p.M845_D846delinsIN	ENST00000375023	NM_004557.3	845	atGGac/atAAac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002367-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	48	494	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002367-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			55	16	153	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002367-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	23	235	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002367-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	23	235	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	184	262	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			746	138	435	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	54	90	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	54	90	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	54	90	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663036	227663036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	101	270	0	ENST00000305123.5:c.419C>T	p.Ser140Phe	p.S140F	ENST00000305123	NM_005544.2	140	tCc/tTc																																																																														
ATR	545	MSKCC	GRCh37	3	142215964	142215964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			815	108	370	0	ENST00000350721.4:c.5629C>G	p.Gln1877Glu	p.Q1877E	ENST00000350721	NM_001184.3	1877	Caa/Gaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636899	176636899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	105	310	0	ENST00000439151.2:c.1499G>C	p.Arg500Thr	p.R500T	ENST00000439151	NM_022455.4	500	aGa/aCa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246748	41246748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1056	129	426	0	ENST00000357654.3:c.800C>T	p.Ser267Leu	p.S267L	ENST00000357654	NM_007294.3	267	tCa/tTa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760719	59760719	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TTG			P-0002403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1115	167	574	0	ENST00000259008.2:c.3688delinsCAA	p.Glu1230GlnfsTer3	p.E1230Qfs*3	ENST00000259008	NM_032043.2	1230	Gaa/CAAaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	147	118	0				ENST00000310581	NM_198253.2																																																																																
MAP2K1	5604	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	338	325	0	ENST00000307102.5:c.371C>T	p.Pro124Leu	p.P124L	ENST00000307102	NM_002755.3	124	cCg/cTg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	150	368	0	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	299	272	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	383	344	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750437	41750437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	343	279	0	ENST00000226382.2:c.191C>T	p.Ser64Phe	p.S64F	ENST00000226382	NM_003924.3	64	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	123	79	0				ENST00000310581	NM_198253.2																																																																																
FLT4	2324	MSKCC	GRCh37	5	180055993	180055993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	113	302	0	ENST00000261937.6:c.992C>T	p.Pro331Leu	p.P331L	ENST00000261937	NM_182925.4	331	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710651	117710651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	198	316	0	ENST00000368508.3:c.1621G>A	p.Gly541Arg	p.G541R	ENST00000368508	NM_002944.2	541	Ggg/Agg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718093	117718093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	139	367	0	ENST00000368508.3:c.764C>T	p.Pro255Leu	p.P255L	ENST00000368508	NM_002944.2	255	cCa/cTa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367321	50367321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	260	224	0	ENST00000331340.3:c.128G>A	p.Gly43Glu	p.G43E	ENST00000331340	NM_006060.4	43	gGa/gAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509235	106509235	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			772	185	349	0	ENST00000359195.3:c.1229G>A	p.Trp410Ter	p.W410*	ENST00000359195	NM_002649.2	410	tGg/tAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500886	8500886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	263	336	0	ENST00000356435.5:c.1996C>T	p.Pro666Ser	p.P666S	ENST00000356435		666	Cct/Tct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	244	165	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	244	165	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417418	139417418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	240	293	0	ENST00000277541.6:c.626C>T	p.Thr209Ile	p.T209I	ENST00000277541	NM_017617.3	209	aCc/aTc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125514094	125514094	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			731	374	391	0	ENST00000428830.2:c.1032T>G	p.Phe344Leu	p.F344L	ENST00000428830	NM_001114121.2	344	ttT/ttG																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591835	48591835	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	292	352	0	ENST00000342988.3:c.998T>C	p.Val333Ala	p.V333A	ENST00000342988	NM_005359.5	333	gTt/gCt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272287	15272287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	110	236	0	ENST00000263388.2:c.6152C>T	p.Pro2051Leu	p.P2051L	ENST00000263388	NM_000435.2	2051	cCt/cTt																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313214	30313214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			616	160	371	0	ENST00000262643.3:c.908C>T	p.Ala303Val	p.A303V	ENST00000262643	NM_001238.2	303	gCc/gTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39772546	39772546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	200	276	0	ENST00000288319.7:c.695C>T	p.Pro232Leu	p.P232L	ENST00000288319	NM_182918.3	232	cCa/cTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41548241	41548241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			584	321	350	0	ENST00000263253.7:c.3029C>T	p.Thr1010Ile	p.T1010I	ENST00000263253	NM_001429.3	1010	aCc/aTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	21	92	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	67	426	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47596714	47596714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	85	240	0	ENST00000263735.4:c.70C>G	p.Gln24Glu	p.Q24E	ENST00000263735	NM_002354.2	24	Cag/Gag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002474-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	25	90	0				ENST00000310581	NM_198253.2																																																																																
KDM5A	5927	MSKCC	GRCh37	12	402100	402100	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002474-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1251	109	512	0	ENST00000399788.2:c.4691A>T	p.Lys1564Met	p.K1564M	ENST00000399788	NM_001042603.1	1564	aAg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			83	32	142	0				ENST00000310581	NM_198253.2																																																																																
VHL	7428	MSKCC	GRCh37	3	10183725	10183725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	120	341	0	ENST00000256474.2:c.194C>T	p.Ser65Leu	p.S65L	ENST00000256474	NM_000551.3	65	tCg/tTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623085	52623085	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0002483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	112	370	0	ENST00000394830.3:c.2965+1G>C		p.X989_splice	ENST00000394830	NM_018313.4	989																																																																															
KDR	3791	MSKCC	GRCh37	4	55976635	55976635	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	95	424	0	ENST00000263923.4:c.1190C>G	p.Thr397Ser	p.T397S	ENST00000263923	NM_002253.2	397	aCt/aGt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89811422	89811422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	49	324	0	ENST00000389301.3:c.3571A>G	p.Ser1191Gly	p.S1191G	ENST00000389301	NM_000135.2	1191	Agc/Ggc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135804235	135804235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	99	318	0	ENST00000298552.3:c.25del	p.Glu9SerfsTer17	p.E9Sfs*17	ENST00000298552	NM_001162426.1	9	Gag/ag																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780815	9780815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	158	321	0	ENST00000377346.4:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000377346	NM_005026.3	513	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258308	16258308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	206	458	1	ENST00000375759.3:c.5573C>T	p.Pro1858Leu	p.P1858L	ENST00000375759	NM_015001.2	1858	cCt/cTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101669	27101669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	230	376	0	ENST00000324856.7:c.4951C>T	p.Pro1651Ser	p.P1651S	ENST00000324856	NM_006015.4	1651	Cct/Tct																																																																														
MPL	4352	MSKCC	GRCh37	1	43805013	43805013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	179	398	0	ENST00000372470.3:c.463G>A	p.Glu155Lys	p.E155K	ENST00000372470	NM_005373.2	155	Gag/Aag																																																																														
MPL	4352	MSKCC	GRCh37	1	43812522	43812522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	182	411	0	ENST00000372470.3:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000372470	NM_005373.2	409	Gag/Aag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510100	120510100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	251	414	0	ENST00000256646.2:c.1409C>T	p.Thr470Ile	p.T470I	ENST00000256646	NM_024408.3	470	aCc/aTc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849083	156849083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	172	398	0	ENST00000524377.1:c.1975G>A	p.Gly659Ser	p.G659S	ENST00000524377	NM_002529.3	659	Ggc/Agc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193104551	193104551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	299	419	0	ENST00000367435.3:c.338C>T	p.Pro113Leu	p.P113L	ENST00000367435	NM_024529.4	113	cCc/cTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082751	16082751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			33	28	43	0	ENST00000281043.3:c.565C>T	p.Pro189Ser	p.P189S	ENST00000281043	NM_005378.4	189	Ccc/Tcc																																																																														
ALK	238	MSKCC	GRCh37	2	29551307	29551307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	176	416	0	ENST00000389048.3:c.1323C>A	p.Phe441Leu	p.F441L	ENST00000389048	NM_004304.4	441	ttC/ttA																																																																														
XPO1	7514	MSKCC	GRCh37	2	61709543	61709543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	264	450	0	ENST00000401558.2:c.2944C>T	p.Leu982Phe	p.L982F	ENST00000401558	NM_003400.3	982	Ctt/Ttt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61726878	61726878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	292	520	0	ENST00000401558.2:c.560C>T	p.Thr187Ile	p.T187I	ENST00000401558	NM_003400.3	187	aCc/aTc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99160374	99160374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	166	356	0	ENST00000074304.5:c.853C>T	p.Pro285Ser	p.P285S	ENST00000074304	NM_001134224.1	285	Cct/Tct																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736133	204736133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	234	479	0	ENST00000302823.3:c.490C>T	p.Leu164Phe	p.L164F	ENST00000302823	NM_005214.4	164	Ctc/Ttc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286761	212286761	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	195	380	2	ENST00000342788.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000342788	NM_005235.2	979	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212568893	212568893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	176	438	0	ENST00000342788.4:c.1225C>T	p.Pro409Ser	p.P409S	ENST00000342788	NM_005235.2	409	Cca/Tca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812340	212812340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	175	288	1	ENST00000342788.4:c.236C>T	p.Ser79Phe	p.S79F	ENST00000342788	NM_005235.2	79	tCt/tTt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713801	30713801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	161	323	0	ENST00000359013.4:c.1201G>T	p.Val401Leu	p.V401L	ENST00000359013	NM_001024847.2	401	Gtg/Ttg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52595830	52595831	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	235	463	1	ENST00000394830.3:c.4084_4085delinsAA	p.Gly1362Lys	p.G1362K	ENST00000394830	NM_018313.4	1362	GGg/AAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498379	89498379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	143	320	0	ENST00000336596.2:c.2351G>A	p.Gly784Glu	p.G784E	ENST00000336596	NM_005233.5	784	gGg/gAg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851706	134851706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	137	336	0	ENST00000398015.3:c.1112C>T	p.Ser371Phe	p.S371F	ENST00000398015	NM_004441.4	371	tCc/tTc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403591	138403591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	267	524	0	ENST00000289153.2:c.2191G>C	p.Val731Leu	p.V731L	ENST00000289153	NM_006219.2	731	Gtg/Ctg																																																																														
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	181	433	0	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55955632	55955632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	167	408	0	ENST00000263923.4:c.3313C>T	p.Pro1105Ser	p.P1105S	ENST00000263923	NM_002253.2	1105	Cca/Tca																																																																														
KDR	3791	MSKCC	GRCh37	4	55972949	55972949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	216	408	0	ENST00000263923.4:c.1441C>T	p.Pro481Ser	p.P481S	ENST00000263923	NM_002253.2	481	Cct/Tct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530398	187530398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	243	460	0	ENST00000441802.2:c.10145C>T	p.Ser3382Leu	p.S3382L	ENST00000441802	NM_005245.3	3382	tCg/tTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557782	187557782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200252550		P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	246	458	0	ENST00000441802.2:c.3929C>T	p.Ser1310Leu	p.S1310L	ENST00000441802	NM_005245.3	1310	tCg/tTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557785	187557785	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	274	462	0	ENST00000441802.2:c.3926T>C	p.Val1309Ala	p.V1309A	ENST00000441802	NM_005245.3	1309	gTt/gCt																																																																														
TERT	7015	MSKCC	GRCh37	5	1254488	1254488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	197	320	0	ENST00000310581.5:c.3290G>A	p.Arg1097Lys	p.R1097K	ENST00000310581	NM_198253.2	1097	aGg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1293683	1293683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	108	232	0	ENST00000310581.5:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000310581	NM_198253.2	440	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	145	181	1				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35867535	35867535	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	146	380	0	ENST00000303115.3:c.349A>G	p.Thr117Ala	p.T117A	ENST00000303115	NM_002185.3	117	Acc/Gcc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876145	35876145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	144	496	0	ENST00000303115.3:c.937G>A	p.Asp313Asn	p.D313N	ENST00000303115	NM_002185.3	313	Gac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112177203	112177203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	218	360	0	ENST00000257430.4:c.5912C>T	p.Ser1971Phe	p.S1971F	ENST00000257430	NM_000038.5	1971	tCt/tTt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131940657	131940657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	253	448	0	ENST00000265335.6:c.2684C>T	p.Ser895Phe	p.S895F	ENST00000265335		895	tCc/tTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441131	149441131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	222	476	0	ENST00000286301.3:c.1781G>A	p.Gly594Glu	p.G594E	ENST00000286301	NM_005211.3	594	gGg/gAg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441313	149441313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	181	427	0	ENST00000286301.3:c.1726G>A	p.Glu576Lys	p.E576K	ENST00000286301	NM_005211.3	576	Gag/Aag																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149450022	149450022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	156	286	0	ENST00000286301.3:c.1195C>T	p.Arg399Ter	p.R399*	ENST00000286301	NM_005211.3	399	Cga/Tga																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497239	149497239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	194	375	0	ENST00000261799.4:c.3079G>A	p.Asp1027Asn	p.D1027N	ENST00000261799	NM_002609.3	1027	Gac/Aac																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515210	149515210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	179	465	1	ENST00000261799.4:c.272C>T	p.Thr91Ile	p.T91I	ENST00000261799	NM_002609.3	91	aCt/aTt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515291	149515291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	178	348	1	ENST00000261799.4:c.191G>A	p.Arg64Gln	p.R64Q	ENST00000261799	NM_002609.3	64	cGg/cAg																																																																														
E2F3	1871	MSKCC	GRCh37	6	20480084	20480084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	201	346	0	ENST00000346618.3:c.401G>A	p.Arg134Gln	p.R134Q	ENST00000346618	NM_001949.4	134	cGa/cAa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20480103	20480103	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	229	400	0	ENST00000346618.3:c.420A>T	p.Glu140Asp	p.E140D	ENST00000346618	NM_001949.4	140	gaA/gaT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672809	30672809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	236	504	0	ENST00000376406.3:c.4151C>T	p.Thr1384Ile	p.T1384I	ENST00000376406	NM_014641.2	1384	aCc/aTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673581	30673581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			696	238	512	0	ENST00000376406.3:c.3379C>T	p.Pro1127Ser	p.P1127S	ENST00000376406	NM_014641.2	1127	Ccc/Tcc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188818	32188818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	158	372	0	ENST00000375023.3:c.736G>A	p.Gly246Arg	p.G246R	ENST00000375023	NM_004557.3	246	Ggg/Agg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553410	106553410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	134	259	0	ENST00000369096.4:c.1375C>T	p.Pro459Ser	p.P459S	ENST00000369096	NM_001198.3	459	Ccc/Tcc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641144	117641144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	201	470	0	ENST00000368508.3:c.5827G>A	p.Glu1943Lys	p.E1943K	ENST00000368508	NM_002944.2	1943	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662691	117662691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	183	407	0	ENST00000368508.3:c.4774C>T	p.Arg1592Cys	p.R1592C	ENST00000368508	NM_002944.2	1592	Cgt/Tgt																																																																														
PARK2	5071	MSKCC	GRCh37	6	161771243	161771243	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	133	308	0	ENST00000366898.1:c.1286G>A	p.Gly429Glu	p.G429E	ENST00000366898	NM_004562.2	429	gGa/gAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962842	2962842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	145	348	0	ENST00000396946.4:c.2066G>A	p.Gly689Glu	p.G689E	ENST00000396946	NM_032415.4	689	gGg/gAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455090	50455090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	173	348	0	ENST00000331340.3:c.637C>T	p.Arg213Ter	p.R213*	ENST00000331340	NM_006060.4	213	Cga/Tga																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467616	50467616	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	95	200	0	ENST00000331340.3:c.851G>A	p.Gly284Glu	p.G284E	ENST00000331340	NM_006060.4	284	gGg/gAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467675	50467675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759124417		P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	159	357	0	ENST00000331340.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000331340	NM_006060.4	304	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467721	50467721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	140	384	0	ENST00000331340.3:c.956T>C	p.Ile319Thr	p.I319T	ENST00000331340	NM_006060.4	319	aTc/aCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223550	55223550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	160	360	0	ENST00000275493.2:c.917C>T	p.Ser306Leu	p.S306L	ENST00000275493	NM_005228.3	306	tCg/tTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227873	55227873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	217	390	0	ENST00000275493.2:c.1340C>T	p.Ser447Phe	p.S447F	ENST00000275493	NM_005228.3	447	tCc/tTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508797	106508797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	207	413	0	ENST00000359195.3:c.791G>A	p.Ser264Asn	p.S264N	ENST00000359195	NM_002649.2	264	aGc/aAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878341	151878341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	218	462	0	ENST00000262189.6:c.6604C>T	p.Pro2202Ser	p.P2202S	ENST00000262189	NM_170606.2	2202	Cca/Tca																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370880	55370880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	101	311	0	ENST00000297316.4:c.182G>A	p.Arg61Gln	p.R61Q	ENST00000297316	NM_022454.3	61	cGa/cAa																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020793	37020793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	181	401	0	ENST00000358127.4:c.52G>A	p.Gly18Arg	p.G18R	ENST00000358127	NM_001280556.1	18	Gga/Aga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342574	87342574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	162	386	0	ENST00000277120.3:c.859C>T	p.Pro287Ser	p.P287S	ENST00000277120		287	Cca/Tca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229611	98229611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	230	405	1	ENST00000331920.6:c.2347C>T	p.Arg783Trp	p.R783W	ENST00000331920	NM_000264.3	783	Cgg/Tgg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759367	133759367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	212	443	0	ENST00000318560.5:c.1690C>T	p.His564Tyr	p.H564Y	ENST00000318560	NM_005157.4	564	Cat/Tat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781460	135781460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	138	335	0	ENST00000298552.3:c.1505G>A	p.Gly502Asp	p.G502D	ENST00000298552	NM_001162426.1	502	gGc/gAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100379	8100379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	141	468	0	ENST00000346208.3:c.353C>T	p.Ser118Phe	p.S118F	ENST00000346208		118	tCc/tTc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64128987	64128988	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	220	386	1	ENST00000334205.4:c.617_618delinsTT	p.Pro206Leu	p.P206L	ENST00000334205	NM_003942.2	206	cCC/cTT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342464	118342464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	262	496	1	ENST00000534358.1:c.590C>T	p.Ser197Phe	p.S197F	ENST00000534358	NM_005933.3	197	tCc/tTc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12006426	12006426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			729	995	501	3	ENST00000396373.4:c.394C>T	p.Pro132Ser	p.P132S	ENST00000396373	NM_001987.4	132	Cca/Tca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435407	18435407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			910	207	445	0	ENST00000266497.5:c.392G>A	p.Gly131Glu	p.G131E	ENST00000266497		131	gGa/gAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491360	18491360	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	602	297	0	ENST00000266497.5:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000266497		425	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691241	18691241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	98	290	0	ENST00000266497.5:c.3352G>A	p.Glu1118Lys	p.E1118K	ENST00000266497		1118	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716344	18716344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			873	234	438	1	ENST00000266497.5:c.3691G>A	p.Glu1231Lys	p.E1231K	ENST00000266497		1231	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	1077	451	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944997	31944997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			759	164	275	0	ENST00000340398.3:c.104G>A	p.Gly35Glu	p.G35E	ENST00000340398	NM_001013699.2	35	gGg/gAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	273	498	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245843	46245843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	225	378	0	ENST00000334344.6:c.3937C>T	p.Gln1313Ter	p.Q1313*	ENST00000334344	NM_152641.2	1313	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424170	49424170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	158	269	0	ENST00000301067.7:c.13892C>T	p.Pro4631Leu	p.P4631L	ENST00000301067	NM_003482.3	4631	cCc/cTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486836	56486836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	273	453	0	ENST00000267101.3:c.1250C>T	p.Thr417Ile	p.T417I	ENST00000267101	NM_001982.3	417	aCc/aTc																																																																														
MDM2	4193	MSKCC	GRCh37	12	69210710	69210710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	217	360	0	ENST00000462284.1:c.293C>T	p.Ser98Phe	p.S98F	ENST00000462284	NM_002392.5	98	tCt/tTt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924330	112924330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	230	420	0	ENST00000351677.2:c.1276C>T	p.His426Tyr	p.H426Y	ENST00000351677	NM_002834.3	426	Cac/Tac																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109863	115109863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			78	109	218	0	ENST00000257566.3:c.2015G>A	p.Gly672Asp	p.G672D	ENST00000257566	NM_016569.3	672	gGc/gAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118751	115118751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	167	496	2	ENST00000257566.3:c.590G>A	p.Trp197Ter	p.W197*	ENST00000257566	NM_016569.3	197	tGg/tAg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416884	121416884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	171	291	0	ENST00000257555.6:c.313G>A	p.Glu105Lys	p.E105K	ENST00000257555		105	Gag/Aag																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001303	29001303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201407326		P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	382	390	1	ENST00000282397.4:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000282397	NM_002019.4	477	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918787	32918787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	449	414	0	ENST00000380152.3:c.6934G>A	p.Asp2312Asn	p.D2312N	ENST00000380152		2312	Gat/Aat																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437106	110437106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			16	43	19	0	ENST00000375856.3:c.1295C>T	p.Ser432Phe	p.S432F	ENST00000375856	NM_003749.2	432	tCc/tTc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986565	36986565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	85	266	0	ENST00000354822.5:c.1124C>T	p.Ser375Phe	p.S375F	ENST00000354822	NM_001079668.2	375	tCc/tTc																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023037	33023037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	142	316	0	ENST00000300177.4:c.146C>T	p.Ser49Leu	p.S49L	ENST00000300177	NM_001191322.1	49	tCg/tTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465483	99465483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	226	500	0	ENST00000268035.6:c.2308G>A	p.Glu770Lys	p.E770K	ENST00000268035	NM_000875.3	770	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892266	9892266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	168	403	3	ENST00000330684.3:c.2224G>A	p.Asp742Asn	p.D742N	ENST00000330684	NM_001134407.1	742	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032069	10032069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868215122		P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	155	458	0	ENST00000330684.3:c.754G>A	p.Asp252Asn	p.D252N	ENST00000330684	NM_001134407.1	252	Gat/Aat																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645286	67645286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	198	393	0	ENST00000264010.4:c.551C>T	p.Pro184Leu	p.P184L	ENST00000264010	NM_006565.3	184	cCa/cTa																																																																														
CDH1	999	MSKCC	GRCh37	16	68849467	68849469	+	missense_variant	Missense_Mutation	ONP	CGA	CGA	TGG			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	204	440	0	ENST00000261769.5:c.1370_1372delinsTGG	p.Thr457_Asn458delinsMetAsp	p.T457_N458delinsMD	ENST00000261769	NM_004360.3	457	aCGAat/aTGGat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	205	423	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	107	260	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984090	7984090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	170	327	0	ENST00000319144.4:c.536G>A	p.Gly179Asp	p.G179D	ENST00000319144	NM_001139.2	179	gGc/gAc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984096	7984096	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	113	313	0	ENST00000319144.4:c.530G>A	p.Trp177Ter	p.W177*	ENST00000319144	NM_001139.2	177	tGg/tAg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17120483	17120483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	136	325	0	ENST00000285071.4:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000285071	NM_144997.5	359	cCt/cTt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17122376	17122376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	143	392	0	ENST00000285071.4:c.1019C>T	p.Pro340Leu	p.P340L	ENST00000285071	NM_144997.5	340	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29657405	29657405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	186	457	0	ENST00000358273.4:c.5701C>T	p.Pro1901Ser	p.P1901S	ENST00000358273	NM_001042492.2	1901	Cct/Tct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435284	56435284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	126	194	1	ENST00000407977.2:c.1853C>T	p.Ala618Val	p.A618V	ENST00000407977		618	gCc/gTc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760790	59760790	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	249	542	0	ENST00000259008.2:c.3617T>G	p.Ile1206Ser	p.I1206S	ENST00000259008	NM_032043.2	1206	aTt/aGt																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519032	66519032	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	266	408	0	ENST00000358598.2:c.313T>A	p.Tyr105Asn	p.Y105N	ENST00000358598	NM_212471.2	105	Tac/Aac																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78919518	78919518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	185	390	0	ENST00000306801.3:c.3077C>T	p.Pro1026Leu	p.P1026L	ENST00000306801	NM_020761.2	1026	cCc/cTc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4102441	4102441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	194	328	0	ENST00000262948.5:c.461C>T	p.Ser154Phe	p.S154F	ENST00000262948	NM_030662.3	154	tCc/tTc																																																																														
AXL	558	MSKCC	GRCh37	19	41743898	41743898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	213	404	0	ENST00000301178.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000301178	NM_021913.4	278	cCc/cTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42795520	42795520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	203	365	0	ENST00000575354.2:c.2600C>T	p.Pro867Leu	p.P867L	ENST00000575354	NM_015125.3	867	cCa/cTa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375076	31375076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	182	347	0	ENST00000328111.2:c.473G>T	p.Trp158Leu	p.W158L	ENST00000328111	NM_006892.3	158	tGg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730850	40730850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	151	351	1	ENST00000373198.4:c.3685G>A	p.Asp1229Asn	p.D1229N	ENST00000373198	NM_133170.3	1229	Gac/Aac																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656822	45656822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			144	351	340	0	ENST00000407780.3:c.334C>T	p.His112Tyr	p.H112Y	ENST00000407780	NM_001283052.1	112	Cac/Tac																																																																														
MED12	9968	MSKCC	GRCh37	X	70349017	70349017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			83	250	234	0	ENST00000374080.3:c.3529C>T	p.Leu1177Phe	p.L1177F	ENST00000374080		1177	Ctt/Ttt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260837	16260837	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	149	278	0	ENST00000375759.3:c.8102del	p.Thr2701ArgfsTer4	p.T2701Rfs*4	ENST00000375759	NM_015001.2	2701	aCg/ag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	170	210	0				ENST00000310581	NM_198253.2																																																																																
CHEK2	11200	MSKCC	GRCh37	22	29121242	29121242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			870	530	557	1	ENST00000328354.6:c.433C>T	p.Arg145Trp	p.R145W	ENST00000328354	NM_007194.3	145	Cgg/Tgg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244997	46244997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	417	574	0	ENST00000334344.6:c.3091C>T	p.Gln1031Ter	p.Q1031*	ENST00000334344	NM_152641.2	1031	Cag/Tag																																																																														
RAF1	5894	MSKCC	GRCh37	3	12629100	12629100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			548	450	434	0	ENST00000251849.4:c.1407G>A	p.Met469Ile	p.M469I	ENST00000251849	NM_002880.3	469	atG/atA																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275290	41275290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113411271		P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			656	226	376	0	ENST00000349496.5:c.1456C>T	p.Arg486Cys	p.R486C	ENST00000349496	NM_001904.3	486	Cgc/Tgc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71102920	71102920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	372	273	0	ENST00000318789.4:c.287C>T	p.Pro96Leu	p.P96L	ENST00000318789	NM_032682.5	96	cCc/cTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133561	55133561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	100	466	0	ENST00000257290.5:c.865G>A	p.Glu289Lys	p.E289K	ENST00000257290	NM_006206.4	289	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549725	187549725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199516712		P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			744	67	429	0	ENST00000441802.2:c.4516C>T	p.Arg1506Cys	p.R1506C	ENST00000441802	NM_005245.3	1506	Cgt/Tgt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631124	176631124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	338	438	0	ENST00000439151.2:c.1067C>T	p.Ser356Phe	p.S356F	ENST00000439151	NM_022455.4	356	tCc/tTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180614	32180615	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	373	478	0	ENST00000375023.3:c.2512_2513delinsAT	p.Gly838Ile	p.G838I	ENST00000375023	NM_004557.3	838	GGa/ATa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190371	32190371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			537	282	389	0	ENST00000375023.3:c.368C>T	p.Pro123Leu	p.P123L	ENST00000375023	NM_004557.3	123	cCt/cTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704527	117704527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			835	225	520	0	ENST00000368508.3:c.2449G>A	p.Glu817Lys	p.E817K	ENST00000368508	NM_002944.2	817	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959055	2959055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	83	369	0	ENST00000396946.4:c.2461C>T	p.Pro821Ser	p.P821S	ENST00000396946	NM_032415.4	821	Cct/Tct																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740797	145740797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	419	453	0	ENST00000428558.2:c.1303C>T	p.Pro435Ser	p.P435S	ENST00000428558	NM_004260.3	435	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485830	8485830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	556	492	0	ENST00000356435.5:c.2987C>T	p.Ala996Val	p.A996V	ENST00000356435		996	gCt/gTt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115709	8115709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	390	413	0	ENST00000346208.3:c.1055G>A	p.Arg352Lys	p.R352K	ENST00000346208		352	aGa/aAa																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202158	67202158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	172	345	0	ENST00000312629.5:c.1261C>T	p.Pro421Ser	p.P421S	ENST00000312629	NM_003952.2	421	Ccc/Tcc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870811	12870811	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	265	193	0	ENST00000228872.4:c.38T>A	p.Leu13Gln	p.L13Q	ENST00000228872	NM_004064.3	13	cTg/cAg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001405	29001405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	156	349	0	ENST00000282397.4:c.1327C>T	p.Leu443Phe	p.L443F	ENST00000282397	NM_002019.4	443	Ctc/Ttc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858184	9858184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	196	559	0	ENST00000330684.3:c.3217G>A	p.Glu1073Lys	p.E1073K	ENST00000330684	NM_001134407.1	1073	Gaa/Aaa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041612	14041612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	223	541	0	ENST00000311895.7:c.2159C>T	p.Pro720Leu	p.P720L	ENST00000311895	NM_005236.2	720	cCa/cTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29679274	29679274	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	349	422	0	ENST00000358273.4:c.7458-1G>A		p.X2486_splice	ENST00000358273	NM_001042492.2	2486																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245197	41245197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	252	546	0	ENST00000357654.3:c.2351C>T	p.Ser784Leu	p.S784L	ENST00000357654	NM_007294.3	784	tCg/tTg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858236	59858236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			882	482	538	2	ENST00000259008.2:c.1759C>T	p.His587Tyr	p.H587Y	ENST00000259008	NM_032043.2	587	Cat/Tat																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2225386	2225386	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			709	197	472	0	ENST00000398665.3:c.3597-1G>A		p.X1199_splice	ENST00000398665	NM_032482.2	1199																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15289973	15289973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	165	474	0	ENST00000263388.2:c.3581C>T	p.Pro1194Leu	p.P1194L	ENST00000263388	NM_000435.2	1194	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292609	15292609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	247	292	0	ENST00000263388.2:c.2570C>T	p.Pro857Leu	p.P857L	ENST00000263388	NM_000435.2	857	cCa/cTa																																																																														
AXL	558	MSKCC	GRCh37	19	41736901	41736901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201799923		P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			701	225	453	0	ENST00000301178.4:c.616G>A	p.Glu206Lys	p.E206K	ENST00000301178	NM_021913.4	206	Gaa/Aaa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45873428	45873428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			656	182	443	0	ENST00000391945.4:c.68C>T	p.Ser23Phe	p.S23F	ENST00000391945	NM_000400.3	23	tCc/tTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561151	9561151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	179	433	0	ENST00000353224.5:c.631G>A	p.Glu211Lys	p.E211K	ENST00000353224	NM_177990.2	211	Gaa/Aaa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561504	9561504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	167	411	0	ENST00000353224.5:c.278C>T	p.Ser93Leu	p.S93L	ENST00000353224	NM_177990.2	93	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306721	41306721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	187	416	0	ENST00000373198.4:c.938C>T	p.Ser313Phe	p.S313F	ENST00000373198	NM_133170.3	313	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578191	7578192	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	345	515	0	ENST00000269305.4:c.657_658delinsTA	p.Tyr220Asn	p.Y220N	ENST00000269305	NM_001126112.2	219	ccCTat/ccTAat																																																																														
INSR	3643	MSKCC	GRCh37	19	7142939	7142940	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0002504-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	113	471	0	ENST00000302850.5:c.2429_2430delinsTT	p.Ser810Phe	p.S810F	ENST00000302850	NM_000208.2	810	tCC/tTT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			66	209	275	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			66	209	275	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			66	209	275	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623777	28623777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	299	585	1	ENST00000241453.7:c.877G>A	p.Glu293Lys	p.E293K	ENST00000241453	NM_004119.2	293	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	41	255	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			833	19	378	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1069	76	472	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
APC	324	MSKCC	GRCh37	5	112174086	112174086	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1000	83	459	0	ENST00000257430.4:c.2795C>G	p.Ser932Ter	p.S932*	ENST00000257430	NM_000038.5	932	tCa/tGa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	463301	463301	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1358	76	658	0	ENST00000399788.2:c.970A>T	p.Ile324Phe	p.I324F	ENST00000399788	NM_001042603.1	324	Att/Ttt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969417	44969417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	118	317	0	ENST00000377967.4:c.4099G>A	p.Gly1367Arg	p.G1367R	ENST00000377967	NM_021140.2	1367	Gga/Aga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120252	70120252	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1028	104	522	1	ENST00000245479.2:c.1254del	p.Ile418MetfsTer52	p.I418Mfs*52	ENST00000245479	NM_000346.3	418	atC/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002540-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1228	105	535	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002584-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	562	142	0				ENST00000310581	NM_198253.2																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50468236	50468236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002584-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			950	126	388	0	ENST00000331340.3:c.1471G>C	p.Glu491Gln	p.E491Q	ENST00000331340	NM_006060.4	491	Gag/Cag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118380662	118380662	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0002584-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			649	223	481	0	ENST00000534358.1:c.10901-1G>C		p.X3634_splice	ENST00000534358	NM_005933.3	3634																																																																															
RB1	5925	MSKCC	GRCh37	13	48947585	48947585	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002584-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	358	621	0	ENST00000267163.4:c.1172C>A	p.Ser391Ter	p.S391*	ENST00000267163	NM_000321.2	391	tCa/tAa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916574	39916574	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0002584-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	34	244	0	ENST00000378444.4:c.4429G>C	p.Glu1477Gln	p.E1477Q	ENST00000378444	NM_001123385.1	1477	Gaa/Caa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040620	47040620	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002584-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	310	259	0	ENST00000329236.7:c.1021C>T	p.Gln341Ter	p.Q341*	ENST00000329236	NM_001204466.1	341	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107147	27107154	+	frameshift_variant	Frame_Shift_Del	DEL	TGTACGAA	TGTACGAA	-			P-0002584-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	222	281	0	ENST00000324856.7:c.6759_6766del	p.Tyr2254ThrfsTer21	p.Y2254Tfs*21	ENST00000324856	NM_006015.4	2253	cTGTACGAA/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7579408	7579460	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	-			P-0002584-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	477	399	0	ENST00000269305.4:c.227_279delCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTG	p.Ala76ValfsTer55	p.A76Vfs*55	ENST00000269305	NM_001126112.2	76	gCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTG/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002586-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	415	256	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002586-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	379	117	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868193	37868193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002586-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			821	905	438	0	ENST00000269571.5:c.914C>G	p.Ser305Cys	p.S305C	ENST00000269571		305	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002586-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	725	536	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934801	9934801	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002586-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			735	364	621	1	ENST00000330684.3:c.1489A>T	p.Ile497Phe	p.I497F	ENST00000330684	NM_001134407.1	497	Atc/Ttc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650748	67650748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002586-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	370	483	0	ENST00000264010.4:c.1053C>G	p.Phe351Leu	p.F351L	ENST00000264010	NM_006565.3	351	ttC/ttG																																																																														
NF1	4763	MSKCC	GRCh37	17	29701051	29701051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002586-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	659	368	0	ENST00000358273.4:c.8398G>A	p.Glu2800Lys	p.E2800K	ENST00000358273	NM_001042492.2	2800	Gaa/Aaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224510	123224511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002586-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	622	352	2	ENST00000218089.9:c.3364dup	p.Thr1122AsnfsTer14	p.T1122Nfs*14	ENST00000218089	NM_001042749.1	1121	-/A																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	40	109	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0002602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	187	348	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044475	47044476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGCC			P-0002602-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	158	285	0	ENST00000329236.7:c.1739_1743dup	p.Arg582GlyfsTer46	p.R582Gfs*46	ENST00000329236	NM_001204466.1	580	tgg/tGGGCCgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	107	93	0				ENST00000310581	NM_198253.2																																																																																
SMARCB1	6598	MSKCC	GRCh37	22	24143260	24143260	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	106	481	0	ENST00000263121.7:c.496del	p.Leu166PhefsTer10	p.L166Ffs*10	ENST00000263121	NM_003073.3	164	ttC/tt																																																																														
MDM4	4194	MSKCC	GRCh37	1	204513805	204513805	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	62	189	0	ENST00000367182.3:c.815A>T	p.Asp272Val	p.D272V	ENST00000367182	NM_001278516.1	272	gAc/gTc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168537	56168537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	135	240	0	ENST00000399503.3:c.1493A>G	p.His498Arg	p.H498R	ENST00000399503	NM_005921.1	498	cAt/cGt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045997	47045997	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0002610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	78	109	0	ENST00000329236.7:c.2558G>T	p.Ter853LeuextTer43	p.*853Lext*43	ENST00000329236	NM_001204466.1	853	tGa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002613-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	19	109	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	41	172	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	15	146	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			733	89	364	1	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11168326	11168326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	29	287	0	ENST00000361445.4:c.7546G>A	p.Asp2516Asn	p.D2516N	ENST00000361445	NM_004958.3	2516	Gat/Aat																																																																														
BARD1	580	MSKCC	GRCh37	2	215645469	215645469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			762	45	414	0	ENST00000260947.4:c.1129G>C	p.Gly377Arg	p.G377R	ENST00000260947	NM_000465.2	377	Ggg/Cgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620683	52620683	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	23	190	0	ENST00000394830.3:c.3070G>C	p.Glu1024Gln	p.E1024Q	ENST00000394830	NM_018313.4	1024	Gaa/Caa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938804	178938804	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	18	102	0	ENST00000263967.3:c.2046G>C	p.Gln682His	p.Q682H	ENST00000263967	NM_006218.2	682	caG/caC																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230801	66230801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	62	376	0	ENST00000273854.3:c.2170G>A	p.Glu724Lys	p.E724K	ENST00000273854	NM_004439.5	724	Gaa/Aaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709505	176709505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			869	56	379	0	ENST00000439151.2:c.5932G>A	p.Glu1978Lys	p.E1978K	ENST00000439151	NM_022455.4	1978	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2974227	2974227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			621	46	312	0	ENST00000396946.4:c.1378C>G	p.Gln460Glu	p.Q460E	ENST00000396946	NM_032415.4	460	Cag/Gag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467780	50467780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	30	288	0	ENST00000331340.3:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000331340	NM_006060.4	339	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55224268	55224268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			756	61	389	0	ENST00000275493.2:c.1049C>G	p.Ser350Cys	p.S350C	ENST00000275493	NM_005228.3	350	tCc/tGc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737576	145737576	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	35	323	0	ENST00000428558.2:c.3187G>C	p.Glu1063Gln	p.E1063Q	ENST00000428558	NM_004260.3	1063	Gag/Cag																																																																														
ATM	472	MSKCC	GRCh37	11	108124579	108124579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	58	318	0	ENST00000278616.4:c.1937C>T	p.Ser646Leu	p.S646L	ENST00000278616	NM_000051.3	646	tCa/tTa																																																																														
CBL	867	MSKCC	GRCh37	11	119167702	119167702	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			875	71	422	0	ENST00000264033.4:c.2111C>G	p.Ser704Cys	p.S704C	ENST00000264033	NM_005188.3	704	tCt/tGt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435484	18435484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			594	38	314	0	ENST00000266497.5:c.469G>C	p.Glu157Gln	p.E157Q	ENST00000266497		157	Gag/Cag																																																																														
CDK8	1024	MSKCC	GRCh37	13	26928012	26928012	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	67	234	0	ENST00000381527.3:c.451G>C	p.Asp151His	p.D151H	ENST00000381527	NM_001260.1	151	Gat/Cat																																																																														
RB1	5925	MSKCC	GRCh37	13	49039161	49039161	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	78	209	0	ENST00000267163.4:c.2239G>T	p.Glu747Ter	p.E747*	ENST00000267163	NM_000321.2	747	Gag/Tag																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2213924	2213924	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			649	47	317	0	ENST00000326181.6:c.3G>A	p.Met1?	p.M1?	ENST00000326181	NM_032271.2	1	atG/atA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973811	15973811	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	70	248	0	ENST00000268712.3:c.4181C>G	p.Ser1394Ter	p.S1394*	ENST00000268712	NM_006311.3	1394	tCa/tGa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243673	41243673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	89	378	0	ENST00000357654.3:c.3875C>T	p.Ser1292Phe	p.S1292F	ENST00000357654	NM_007294.3	1292	tCt/tTt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59861650	59861650	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			996	58	354	0	ENST00000259008.2:c.1609C>G	p.Leu537Val	p.L537V	ENST00000259008	NM_032043.2	537	Ctt/Gtt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11113718	11113718	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			590	35	327	0	ENST00000344626.4:c.1826C>G	p.Thr609Ser	p.T609S	ENST00000344626	NM_003072.3	609	aCc/aGc																																																																														
CIC	23152	MSKCC	GRCh37	19	42793358	42793358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	29	290	0	ENST00000575354.2:c.1160C>G	p.Ser387Cys	p.S387C	ENST00000575354	NM_015125.3	387	tCt/tGt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40709551	40709551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			786	44	437	0	ENST00000373198.4:c.4351G>C	p.Glu1451Gln	p.E1451Q	ENST00000373198	NM_133170.3	1451	Gag/Cag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185061	123185061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	41	231	0	ENST00000218089.9:c.1108C>T	p.Arg370Trp	p.R370W	ENST00000218089	NM_001042749.1	370	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002668-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	138	193	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002668-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	674	305	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099981	27099981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002668-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	105	342	0	ENST00000324856.7:c.3860G>C	p.Arg1287Thr	p.R1287T	ENST00000324856	NM_006015.4	1287	aGa/aCa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067192	37067192	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201673334		P-0002668-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	238	342	0	ENST00000231790.2:c.1103C>T	p.Ser368Leu	p.S368L	ENST00000231790	NM_000249.3	368	tCg/tTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55981514	55981514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002668-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	164	341	0	ENST00000263923.4:c.423C>G	p.Asn141Lys	p.N141K	ENST00000263923	NM_002253.2	141	aaC/aaG																																																																														
LATS1	9113	MSKCC	GRCh37	6	149982921	149982921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002668-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			658	205	320	0	ENST00000253339.5:c.3337G>A	p.Glu1113Lys	p.E1113K	ENST00000253339		1113	Gaa/Aaa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090868	5090868	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002668-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1434	148	241	0	ENST00000381652.3:c.3016G>C	p.Glu1006Gln	p.E1006Q	ENST00000381652	NM_004972.3	1006	Gaa/Caa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426544	49426544	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002668-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	493	427	0	ENST00000301067.7:c.11944C>T	p.Arg3982Ter	p.R3982*	ENST00000301067	NM_003482.3	3982	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	48941720	48941720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002668-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			55	445	215	0	ENST00000267163.4:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000267163	NM_000321.2	344	Cag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3831241	3831241	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002668-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	162	305	0	ENST00000262367.5:c.1640C>G	p.Ser547Ter	p.S547*	ENST00000262367	NM_004380.2	547	tCa/tGa																																																																														
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	182	369	1	ENST00000358273.4:c.1882delT	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	163	406	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692887	89692887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	21	197	0	ENST00000371953.3:c.371G>A	p.Cys124Tyr	p.C124Y	ENST00000371953	NM_000314.4	124	tGt/tAt																																																																														
IRF4	3662	MSKCC	GRCh37	6	407575	407575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	228	410	0	ENST00000380956.4:c.1333C>T	p.Arg445Cys	p.R445C	ENST00000380956	NM_001195286.1	445	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427975	49427975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			741	197	428	0	ENST00000301067.7:c.10615C>T	p.Arg3539Trp	p.R3539W	ENST00000301067	NM_003482.3	3539	Cgg/Tgg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784393	9784393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	199	375	0	ENST00000377346.4:c.2778C>A	p.Asn926Lys	p.N926K	ENST00000377346	NM_005026.3	926	aaC/aaA																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843595	156843595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139875058		P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	231	461	0	ENST00000524377.1:c.1021G>A	p.Val341Met	p.V341M	ENST00000524377	NM_002529.3	341	Gtg/Atg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467037	25467037	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	122	326	0	ENST00000264709.3:c.1838A>T	p.His613Leu	p.H613L	ENST00000264709	NM_175629.2	613	cAc/cTc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26022268	26022268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	222	459	1	ENST00000435504.4:c.389G>A	p.Arg130Lys	p.R130K	ENST00000435504		130	aGg/aAg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660972	227660972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	41	365	0	ENST00000305123.5:c.2483G>A	p.Ser828Asn	p.S828N	ENST00000305123	NM_005544.2	828	aGc/aAc																																																																														
RHOA	387	MSKCC	GRCh37	3	49412913	49412913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	241	436	0	ENST00000418115.1:c.110C>T	p.Thr37Ile	p.T37I	ENST00000418115	NM_001664.2	37	aCa/aTa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441246	52441246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	31	352	1	ENST00000460680.1:c.524C>A	p.Pro175His	p.P175H	ENST00000460680	NM_004656.3	175	cCt/cAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259497	89259497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	175	356	0	ENST00000336596.2:c.641A>G	p.Asp214Gly	p.D214G	ENST00000336596	NM_005233.5	214	gAc/gGc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185161339	185161339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	161	414	0	ENST00000265026.3:c.766C>A	p.Leu256Ile	p.L256I	ENST00000265026	NM_004721.4	256	Cta/Ata																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151595	55151595	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	194	422	0	ENST00000257290.5:c.2381A>T	p.Asp794Val	p.D794V	ENST00000257290	NM_006206.4	794	gAt/gTt																																																																														
KIT	3815	MSKCC	GRCh37	4	55564731	55564731	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	125	270	0	ENST00000288135.5:c.619G>T	p.Ala207Ser	p.A207S	ENST00000288135	NM_000222.2	207	Gcc/Tcc																																																																														
KDR	3791	MSKCC	GRCh37	4	55981203	55981203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	128	326	0	ENST00000263923.4:c.496C>T	p.Pro166Ser	p.P166S	ENST00000263923	NM_002253.2	166	Cca/Tca																																																																														
TET2	54790	MSKCC	GRCh37	4	106193857	106193857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			485	28	346	0	ENST00000380013.4:c.4319G>A	p.Arg1440Gln	p.R1440Q	ENST00000380013	NM_001127208.2	1440	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557879	187557879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	213	469	0	ENST00000441802.2:c.3832G>A	p.Asp1278Asn	p.D1278N	ENST00000441802	NM_005245.3	1278	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1260664	1260664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	201	373	0	ENST00000310581.5:c.2895G>T	p.Lys965Asn	p.K965N	ENST00000310581	NM_198253.2	965	aaG/aaT																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923636	131923636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	110	288	0	ENST00000265335.6:c.906G>T	p.Glu302Asp	p.E302D	ENST00000265335		302	gaG/gaT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187516	32187516	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	145	276	0	ENST00000375023.3:c.1363A>C	p.Thr455Pro	p.T455P	ENST00000375023	NM_004557.3	455	Act/Cct																																																																														
PIM1	5292	MSKCC	GRCh37	6	37138608	37138608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	165	384	0	ENST00000373509.5:c.142G>A	p.Gly48Ser	p.G48S	ENST00000373509	NM_002648.3	48	Ggc/Agc																																																																														
CCND3	896	MSKCC	GRCh37	6	41903728	41903728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	185	351	0	ENST00000372991.4:c.829G>T	p.Gly277Trp	p.G277W	ENST00000372991	NM_001760.3	277	Ggg/Tgg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023045	150023045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	222	445	0	ENST00000253339.5:c.218C>T	p.Thr73Met	p.T73M	ENST00000253339		73	aCg/aTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157222585	157222585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	215	355	0	ENST00000346085.5:c.1852C>T	p.Pro618Ser	p.P618S	ENST00000346085	NM_020732.3	618	Ccg/Tcg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367344	50367344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	156	191	0	ENST00000331340.3:c.151A>G	p.Arg51Gly	p.R51G	ENST00000331340	NM_006060.4	51	Aga/Gga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285764	87285764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	200	441	0	ENST00000277120.3:c.101C>T	p.Thr34Met	p.T34M	ENST00000277120		34	aCg/aTg																																																																														
SYK	6850	MSKCC	GRCh37	9	93607851	93607851	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	138	379	0	ENST00000375746.1:c.553G>T	p.Gly185Ter	p.G185*	ENST00000375746	NM_001174167.1	185	Gga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404214	139404214	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	175	277	0	ENST00000277541.6:c.2940T>A	p.Cys980Ter	p.C980*	ENST00000277541	NM_017617.3	980	tgT/tgA																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741576	17741576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	126	129	3	ENST00000250003.3:c.247G>A	p.Ala83Thr	p.A83T	ENST00000250003	NM_002478.4	83	Gcg/Acg																																																																														
YAP1	10413	MSKCC	GRCh37	11	102098220	102098220	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	161	287	0	ENST00000282441.5:c.1184A>G	p.Asp395Gly	p.D395G	ENST00000282441	NM_001130145.2	395	gAt/gGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343634	118343634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	146	283	0	ENST00000534358.1:c.1760C>A	p.Pro587His	p.P587H	ENST00000534358	NM_005933.3	587	cCt/cAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344619	118344619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	206	414	0	ENST00000534358.1:c.2745G>T	p.Lys915Asn	p.K915N	ENST00000534358	NM_005933.3	915	aaG/aaT																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025645	1025645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	139	316	0	ENST00000358495.3:c.730C>A	p.Leu244Met	p.L244M	ENST00000358495	NM_134424.2	244	Ctg/Atg																																																																														
CCND2	894	MSKCC	GRCh37	12	4383294	4383294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	42	342	0	ENST00000261254.3:c.88C>A	p.Leu30Met	p.L30M	ENST00000261254	NM_001759.3	30	Ctg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438725	49438725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	341	333	0	ENST00000301067.7:c.4765G>T	p.Gly1589Cys	p.G1589C	ENST00000301067	NM_003482.3	1589	Ggt/Tgt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929168	32929168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	294	467	0	ENST00000380152.3:c.7178T>C	p.Met2393Thr	p.M2393T	ENST00000380152		2393	aTg/aCg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	142	391	0	ENST00000330684.3:c.4021A>G	p.Ser1341Gly	p.S1341G	ENST00000330684	NM_001134407.1	1341	Agc/Ggc																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110498	8110498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	29	284	0	ENST00000585124.1:c.394C>A	p.Leu132Met	p.L132M	ENST00000585124	NM_004217.3	132	Ctg/Atg																																																																														
NF1	4763	MSKCC	GRCh37	17	29562747	29562747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	188	353	0	ENST00000358273.4:c.3827G>A	p.Arg1276Gln	p.R1276Q	ENST00000358273	NM_001042492.2	1276	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29654674	29654674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			548	36	386	0	ENST00000358273.4:c.5426C>T	p.Pro1809Leu	p.P1809L	ENST00000358273	NM_001042492.2	1809	cCg/cTg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63530035	63530035	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	193	381	0	ENST00000307078.5:c.2400T>A	p.Asn800Lys	p.N800K	ENST00000307078	NM_004655.3	800	aaT/aaA																																																																														
STK11	6794	MSKCC	GRCh37	19	1206955	1206955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	97	236	0	ENST00000326873.7:c.43G>A	p.Gly15Ser	p.G15S	ENST00000326873	NM_000455.4	15	Ggc/Agc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119228	3119228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	175	425	0	ENST00000078429.4:c.760C>A	p.Leu254Met	p.L254M	ENST00000078429	NM_002067.2	254	Ctg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105557	11105557	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	186	373	2	ENST00000344626.4:c.1473A>T	p.Arg491Ser	p.R491S	ENST00000344626	NM_003072.3	491	agA/agT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152139	11152139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	208	388	4	ENST00000344626.4:c.4327C>T	p.Arg1443Cys	p.R1443C	ENST00000344626	NM_003072.3	1443	Cgc/Tgc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39744945	39744945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	36	376	0	ENST00000361337.2:c.1735G>T	p.Asp579Tyr	p.D579Y	ENST00000361337	NM_003286.2	579	Gat/Tat																																																																														
GNAS	2778	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	101	242	0	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	35	380	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44921916	44921916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	218	428	0	ENST00000377967.4:c.1450A>G	p.Arg484Gly	p.R484G	ENST00000377967	NM_021140.2	484	Aga/Gga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006867	47006867	+	5_prime_UTR_variant	5'UTR	SNP	G	G	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	231	423	1	ENST00000329236.7:c.-14G>T		p.*5*	ENST00000329236	NM_001204466.1																																																																																
RBM10	8241	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	145	363	2	ENST00000329236.7:c.201+1688T>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																
ALK	238	MSKCC	GRCh37	2	29446222	29446223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	188	337	2	ENST00000389048.3:c.3344dup	p.Asn1115LysfsTer18	p.N1115Kfs*18	ENST00000389048	NM_004304.4	1115	aac/aaAc																																																																														
ATR	545	MSKCC	GRCh37	3	142268379	142268380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	156	349	0	ENST00000350721.4:c.3112dup	p.Ser1038PhefsTer11	p.S1038Ffs*11	ENST00000350721	NM_001184.3	1038	tct/tTct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534473	187534473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	160	271	0	ENST00000441802.2:c.9253delC	p.Asp3086IlefsTer30	p.D3086Ifs*30	ENST00000441802	NM_005245.3	3085	Ctt/tt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259555	55259557	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	122	245	0	ENST00000275493.2:c.2615_2617del	p.Glu872del	p.E872del	ENST00000275493	NM_005228.3	871	gcAGAa/gca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874012	151874013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	43	459	1	ENST00000262189.6:c.8525dup	p.Asn2842LysfsTer2	p.N2842Kfs*2	ENST00000262189	NM_170606.2	2842	aat/aaAt																																																																														
SYK	6850	MSKCC	GRCh37	9	93607816	93607817	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	151	378	0	ENST00000375746.1:c.522_523del	p.Arg175GlyfsTer4	p.R175Gfs*4	ENST00000375746	NM_001174167.1	173	aTC/a																																																																														
FANCC	2176	MSKCC	GRCh37	9	97912207	97912208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	190	344	0	ENST00000289081.3:c.683dup	p.Leu228PhefsTer24	p.L228Ffs*24	ENST00000289081	NM_000136.2	228	ttg/ttTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274647	123274648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	138	314	0	ENST00000358487.5:c.1270dup	p.Leu424ProfsTer10	p.L424Pfs*10	ENST00000358487	NM_000141.4	424	ctg/cCtg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	167	442	3	ENST00000434045.2:c.686delC	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992227	11992229	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	109	268	0	ENST00000396373.4:c.320_322del	p.Pro107del	p.P107del	ENST00000396373	NM_001987.4	106	tCTCct/tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433979	49433979	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	250	266	0	ENST00000301067.7:c.7574del	p.Gly2525ValfsTer18	p.G2525Vfs*18	ENST00000301067	NM_003482.3	2525	gGt/gt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448407	49448408	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			612	172	386	0	ENST00000301067.7:c.303dup	p.Ser102GlufsTer6	p.S102Efs*6	ENST00000301067	NM_003482.3	101	-/G																																																																														
POLE	5426	MSKCC	GRCh37	12	133238183	133238184	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	170	433	0	ENST00000320574.5:c.2793dup	p.Glu932Ter	p.E932*	ENST00000320574	NM_006231.2	931	-/T																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647483	23647483	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	150	387	1	ENST00000261584.4:c.384del	p.His130ThrfsTer47	p.H130Tfs*47	ENST00000261584	NM_024675.3	128	ttT/tt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	159	331	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39623699	39623700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	180	331	0	ENST00000262039.4:c.2112dup	p.Arg705Ter	p.R705*	ENST00000262039	NM_002647.2	702	-/T																																																																														
AXL	558	MSKCC	GRCh37	19	41727909	41727909	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	206	430	0	ENST00000301178.4:c.538del	p.Leu180TrpfsTer18	p.L180Wfs*18	ENST00000301178	NM_021913.4	178	gtC/gt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913179	39913179	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002671-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	218	418	2	ENST00000378444.4:c.4936delC	p.Leu1646SerfsTer28	p.L1646Sfs*28	ENST00000378444	NM_001123385.1	1646	Ctc/tc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0002674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	276	197	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40730889	40730889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			657	139	247	0	ENST00000373198.4:c.3646G>T	p.Gly1216Trp	p.G1216W	ENST00000373198	NM_133170.3	1216	Ggg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	166	280	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	166	280	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578360	7578373	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGCTGCTCACCAT	CAGCTGCTCACCAT	-			P-0002674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	142	240	0	ENST00000269305.4:c.557_559+11del		p.X186_splice	ENST00000269305	NM_001126112.2	186																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	38	152	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27024032	27024032	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			39	10	26	0	ENST00000324856.7:c.1137+1G>A		p.X379_splice	ENST00000324856	NM_006015.4	379																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27097658	27097658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	98	311	0	ENST00000324856.7:c.3247G>T	p.Gly1083Cys	p.G1083C	ENST00000324856	NM_006015.4	1083	Ggc/Tgc																																																																														
MPL	4352	MSKCC	GRCh37	1	43812580	43812580	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	81	299	0	ENST00000372470.3:c.1283C>G	p.Thr428Arg	p.T428R	ENST00000372470	NM_005373.2	428	aCa/aGa																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176175826	176175826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	95	115	0	ENST00000367669.3:c.289G>T	p.Ala97Ser	p.A97S	ENST00000367669	NM_022457.5	97	Gcc/Tcc																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665045	138665045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			26	32	22	0	ENST00000330315.3:c.520G>A	p.Gly174Ser	p.G174S	ENST00000330315	NM_023067.3	174	Ggc/Agc																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683669	162683669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	278	286	0	ENST00000366898.1:c.300G>T	p.Gln100His	p.Q100H	ENST00000366898	NM_004562.2	100	caG/caT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55269467	55269467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	187	294	0	ENST00000275493.2:c.3154A>G	p.Arg1052Gly	p.R1052G	ENST00000275493	NM_005228.3	1052	Aga/Gga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508619	106508619	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	128	197	0	ENST00000359195.3:c.613A>G	p.Lys205Glu	p.K205E	ENST00000359195	NM_002649.2	205	Aag/Gag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685272	89685272	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	111	175	0	ENST00000371953.3:c.167T>G	p.Phe56Cys	p.F56C	ENST00000371953	NM_000314.4	56	tTt/tGt																																																																														
POLE	5426	MSKCC	GRCh37	12	133256226	133256226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	71	241	0	ENST00000320574.5:c.435G>T	p.Leu145Phe	p.L145F	ENST00000320574	NM_006231.2	145	ttG/ttT																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222216	2222216	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	275	374	0	ENST00000326181.6:c.500A>C	p.Lys167Thr	p.K167T	ENST00000326181	NM_032271.2	167	aAa/aCa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492721	56492721	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	185	324	2	ENST00000407977.2:c.218C>G	p.Ala73Gly	p.A73G	ENST00000407977		73	gCt/gGt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306757	41306757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	95	196	0	ENST00000373198.4:c.902G>T	p.Gly301Val	p.G301V	ENST00000373198	NM_133170.3	301	gGg/gTg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317431	1317431	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			89	143	235	0				ENST00000381566																																																																																	
CARD11	84433	MSKCC	GRCh37	7	2968239	2968239	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	191	307	0	ENST00000396946.4:c.1747del	p.His583IlefsTer17	p.H583Ifs*17	ENST00000396946	NM_032415.4	583	Cat/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7577091	7577091	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002689-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	200	356	0	ENST00000269305.4:c.847del	p.Arg283AlafsTer62	p.R283Afs*62	ENST00000269305	NM_001126112.2	283	Cgc/gc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	61	283	0				ENST00000310581	NM_198253.2																																																																																
SPEN	23013	MSKCC	GRCh37	1	16264491	16264491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	97	438	0	ENST00000375759.3:c.10694G>A	p.Arg3565Gln	p.R3565Q	ENST00000375759	NM_015001.2	3565	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087558	27087558	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			788	117	576	0	ENST00000324856.7:c.2132C>G	p.Ser711Ter	p.S711*	ENST00000324856	NM_006015.4	711	tCa/tGa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461597	138461597	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			827	94	532	0	ENST00000289153.2:c.424G>C	p.Asp142His	p.D142H	ENST00000289153	NM_006219.2	142	Gat/Cat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724314	117724314	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			698	104	469	0	ENST00000368508.3:c.565C>G	p.His189Asp	p.H189D	ENST00000368508	NM_002944.2	189	Cat/Gat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884356	151884356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	76	499	0	ENST00000262189.6:c.4999G>A	p.Glu1667Lys	p.E1667K	ENST00000262189	NM_170606.2	1667	Gaa/Aaa																																																																														
CCND1	595	MSKCC	GRCh37	11	69456203	69456203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			844	115	600	0	ENST00000227507.2:c.122C>T	p.Ser41Leu	p.S41L	ENST00000227507	NM_053056.2	41	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108165783	108165783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	84	461	0	ENST00000278616.4:c.4906C>T	p.Gln1636Ter	p.Q1636*	ENST00000278616	NM_000051.3	1636	Cag/Tag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38064117	38064117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	64	506	0	ENST00000250448.2:c.61G>C	p.Asp21His	p.D21H	ENST00000250448	NM_004496.3	21	Gac/Cac																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67358517	67358517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	36	361	0	ENST00000327367.4:c.25C>T	p.Pro9Ser	p.P9S	ENST00000327367	NM_005902.3	9	Ccc/Tcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786117	3786117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1022	158	817	0	ENST00000262367.5:c.4648G>C	p.Glu1550Gln	p.E1550Q	ENST00000262367	NM_004380.2	1550	Gaa/Caa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687288	37687288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			924	140	607	0	ENST00000447079.4:c.4192C>T	p.Pro1398Ser	p.P1398S	ENST00000447079	NM_015083.1	1398	Cca/Tca																																																																														
CIC	23152	MSKCC	GRCh37	19	42791010	42791010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			800	124	509	0	ENST00000575354.2:c.155C>A	p.Ser52Tyr	p.S52Y	ENST00000575354	NM_015125.3	52	tCc/tAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566488	41566488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1078	81	685	0	ENST00000263253.7:c.4365G>C	p.Gln1455His	p.Q1455H	ENST00000263253	NM_001429.3	1455	caG/caC																																																																														
ATRX	546	MSKCC	GRCh37	X	76938391	76938391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			515	67	463	0	ENST00000373344.5:c.2357C>T	p.Ser786Phe	p.S786F	ENST00000373344	NM_000489.3	786	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	43	450	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	53	456	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
ATRX	546	MSKCC	GRCh37	X	76778738	76778738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			19	19	296	0	ENST00000373344.5:c.6841G>T	p.Glu2281Ter	p.E2281*	ENST00000373344	NM_000489.3	2281	Gag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	51	439	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11308032	11308032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	63	519	0	ENST00000361445.4:c.960G>T	p.Gln320His	p.Q320H	ENST00000361445	NM_004958.3	320	caG/caT																																																																														
ALK	238	MSKCC	GRCh37	2	30143132	30143132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	33	444	0	ENST00000389048.3:c.394G>T	p.Val132Leu	p.V132L	ENST00000389048	NM_004304.4	132	Gtg/Ttg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198260781	198260781	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	46	464	0	ENST00000335508.6:c.3538A>T	p.Arg1180Ter	p.R1180*	ENST00000335508	NM_012433.2	1180	Aga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691796	30691796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	28	497	0	ENST00000359013.4:c.373G>T	p.Val125Phe	p.V125F	ENST00000359013	NM_001024847.2	125	Gtt/Ttt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259587	89259587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	15	340	0	ENST00000336596.2:c.731G>A	p.Cys244Tyr	p.C244Y	ENST00000336596	NM_005233.5	244	tGc/tAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524922	187524922	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	40	517	0	ENST00000441802.2:c.10758G>C	p.Met3586Ile	p.M3586I	ENST00000441802	NM_005245.3	3586	atG/atC																																																																														
APC	324	MSKCC	GRCh37	5	112103068	112103068	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	25	396	0	ENST00000257430.4:c.403G>T	p.Glu135Ter	p.E135*	ENST00000257430	NM_000038.5	135	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112173860	112173860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			36	29	446	0	ENST00000257430.4:c.2569G>C	p.Gly857Arg	p.G857R	ENST00000257430	NM_000038.5	857	Gga/Cga																																																																														
HGF	3082	MSKCC	GRCh37	7	81335697	81335697	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			52	14	469	0	ENST00000222390.5:c.1663G>T	p.Gly555Ter	p.G555*	ENST00000222390	NM_000601.4	555	Gga/Tga																																																																														
NBN	4683	MSKCC	GRCh37	8	90970984	90970984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	23	485	0	ENST00000265433.3:c.1093G>C	p.Ala365Pro	p.A365P	ENST00000265433	NM_002485.4	365	Gct/Cct																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738392	145738392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	78	437	0	ENST00000428558.2:c.2593G>A	p.Glu865Lys	p.E865K	ENST00000428558	NM_004260.3	865	Gaa/Aaa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249766	110249766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	53	296	0	ENST00000374672.4:c.909C>A	p.His303Gln	p.H303Q	ENST00000374672	NM_004235.4	303	caC/caA																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156596	2156596	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			82	29	365	0	ENST00000434045.2:c.325+1G>T		p.X109_splice	ENST00000434045	NM_001127598.1	109																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18715776	18715776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	30	508	1	ENST00000266497.5:c.3607A>G	p.Arg1203Gly	p.R1203G	ENST00000266497		1203	Agg/Ggg																																																																														
RB1	5925	MSKCC	GRCh37	13	48954316	48954316	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	16	381	0	ENST00000267163.4:c.1437C>G	p.Asp479Glu	p.D479E	ENST00000267163	NM_000321.2	479	gaC/gaG																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434986	110434986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	39	316	0	ENST00000375856.3:c.3415G>T	p.Asp1139Tyr	p.D1139Y	ENST00000375856	NM_003749.2	1139	Gac/Tac																																																																														
DICER1	23405	MSKCC	GRCh37	14	95599651	95599651	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	23	382	0	ENST00000343455.3:c.144+1G>T		p.X48_splice	ENST00000343455	NM_177438.2	48																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99500550	99500550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	49	371	0	ENST00000268035.6:c.3983G>T	p.Gly1328Val	p.G1328V	ENST00000268035	NM_000875.3	1328	gGc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	36	444	0	ENST00000269305.4:c.309C>A	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taA																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	140	428	0	ENST00000171111.5:c.815G>C	p.Arg272Pro	p.R272P	ENST00000171111	NM_203500.1	272	cGc/cCc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105651	11105651	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			59	121	413	0	ENST00000344626.4:c.1567G>T	p.Glu523Ter	p.E523*	ENST00000344626	NM_003072.3	523	Gag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271758	15271758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	30	347	0	ENST00000263388.2:c.6681C>A	p.His2227Gln	p.H2227Q	ENST00000263388	NM_000435.2	2227	caC/caA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			25	46	160	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			25	46	160	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			25	46	160	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039826	47039847	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCCAATGAAGGCAGTCGCAT	CCTCCAATGAAGGCAGTCGCAT	-			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			37	44	282	0	ENST00000329236.7:c.936_957del	p.Ser313ValfsTer87	p.S313Vfs*87	ENST00000329236	NM_001204466.1	312	gCCTCCAATGAAGGCAGTCGCATc/gc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039856	47039872	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCTGTGGCCAGCACT	CCTCTGTGGCCAGCACT	-			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			38	49	250	0	ENST00000329236.7:c.965_981del	p.Ala322GlyfsTer37	p.A322Gfs*37	ENST00000329236	NM_001204466.1	322	gCCTCTGTGGCCAGCACT/g																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039877	47039884	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCTGCG	TTGCTGCG	C			P-0002758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	49	213	0	ENST00000329236.7:c.986_993delinsC	p.Ile329ThrfsTer76	p.I329Tfs*76	ENST00000329236	NM_001204466.1	329	aTTGCTGCG/aC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	170	227	2				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			795	33	546	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	38	531	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1049	408	381	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	641	531	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	53	354	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356289	66356289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			112	493	447	0	ENST00000273854.3:c.1208G>C	p.Gly403Ala	p.G403A	ENST00000273854	NM_004439.5	403	gGt/gCt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268084	153268084	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	624	333	0	ENST00000281708.4:c.724C>T	p.Gln242Ter	p.Q242*	ENST00000281708	NM_033632.3	242	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629902	187629902	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			776	55	416	0	ENST00000441802.2:c.1080C>G	p.Phe360Leu	p.F360L	ENST00000441802	NM_005245.3	360	ttC/ttG																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288774	33288774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	113	276	0	ENST00000374542.5:c.778C>T	p.Arg260Cys	p.R260C	ENST00000374542	NM_001141970.1	260	Cgt/Tgt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725487	117725487	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	36	396	0	ENST00000368508.3:c.394C>G	p.Gln132Glu	p.Q132E	ENST00000368508	NM_002944.2	132	Cag/Gag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012290	152012290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			798	42	610	0	ENST00000262189.6:c.523G>A	p.Asp175Asn	p.D175N	ENST00000262189	NM_170606.2	175	Gac/Aac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420049	49420049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	117	493	0	ENST00000301067.7:c.15700G>A	p.Glu5234Lys	p.E5234K	ENST00000301067	NM_003482.3	5234	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	49030486	49030486	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			103	357	239	0	ENST00000267163.4:c.1960+1G>T		p.X654_splice	ENST00000267163	NM_000321.2	654																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209086	41209086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1074	87	581	0	ENST00000357654.3:c.5260G>C	p.Glu1754Gln	p.E1754Q	ENST00000357654	NM_007294.3	1754	Gaa/Caa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652121	36652122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	351	347	0	ENST00000244741.5:c.247dupC	p.Arg83ProfsTer6	p.R83Pfs*6	ENST00000244741	NM_000389.4	81	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002801-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	155	202	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172065	99172065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002801-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	82	188	1	ENST00000074304.5:c.1631G>A	p.Arg544His	p.R544H	ENST00000074304	NM_001134224.1	544	cGt/cAt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149456904	149456904	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002801-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			586	136	346	0	ENST00000286301.3:c.824A>G	p.Asn275Ser	p.N275S	ENST00000286301	NM_005211.3	275	aAc/aGc																																																																														
HGF	3082	MSKCC	GRCh37	7	81358978	81358978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002801-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	117	339	0	ENST00000222390.5:c.983G>A	p.Arg328His	p.R328H	ENST00000222390	NM_000601.4	328	cGt/cAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002801-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	63	69	0	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002801-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	63	69	0	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002801-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	63	69	0	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002801-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	134	351	0	ENST00000342988.3:c.1055G>C	p.Gly352Ala	p.G352A	ENST00000342988	NM_005359.5	352	gGa/gCa																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308068	30308068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002801-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2333	438	338	0	ENST00000262643.3:c.205G>A	p.Ala69Thr	p.A69T	ENST00000262643	NM_001238.2	69	Gca/Aca																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31379483	31379483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002801-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			584	331	322	0	ENST00000328111.2:c.890C>T	p.Ser297Phe	p.S297F	ENST00000328111	NM_006892.3	297	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	21	351	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971198	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0002830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	14	97	0	ENST00000304494.5:c.160_162delATG	p.Met54del	p.M54del	ENST00000304494	NM_000077.4	54	ATG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971198	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0002830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	14	97	0	ENST00000304494.5:c.160_162delATG	p.Met54del	p.M54del	ENST00000304494	NM_000077.4	54	ATG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971198	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0002830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	14	97	0	ENST00000304494.5:c.160_162delATG	p.Met54del	p.M54del	ENST00000304494	NM_000077.4	54	ATG/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	128	132	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0002875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	147	367	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267698	198267698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	84	266	0	ENST00000335508.6:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000335508	NM_012433.2	594	cGa/cAa																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2588120	2588120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			30	17	23	0	ENST00000342085.4:c.7A>G	p.Arg3Gly	p.R3G	ENST00000342085	NM_002613.4	3	Agg/Ggg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002888-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	71	219	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108202641	108202642	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTTTGTTTATTATACTGGCCTTAGCAAATGCAA			P-0002888-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	100	389	0	ENST00000278616.4:c.7668_7701dup	p.Arg2568PhefsTer14	p.R2568Ffs*14	ENST00000278616	NM_000051.3	2555	-/ACTTTGTTTATTATACTGGCCTTAGCAAATGCAA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002906-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	86	464	0				ENST00000310581	NM_198253.2																																																																																
NSD1	64324	MSKCC	GRCh37	5	176638440	176638440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002906-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	206	1090	0	ENST00000439151.2:c.3040G>T	p.Asp1014Tyr	p.D1014Y	ENST00000439151	NM_022455.4	1014	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002906-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	151	1058	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12043200	12043200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0002906-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	127	1158	0	ENST00000353533.5:c.1085T>C	p.Leu362Pro	p.L362P	ENST00000353533	NM_003010.3	362	cTg/cCg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135804181	135804187	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTCAC	CTGTCAC	-			P-0002906-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	152	988	0	ENST00000298552.3:c.73_79del	p.Val25LeufsTer16	p.V25Lfs*16	ENST00000298552	NM_001162426.1	25	GTGACAGct/ct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002910-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			584	122	344	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002910-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			224	54	139	0				ENST00000310581	NM_198253.2																																																																																
ALK	238	MSKCC	GRCh37	2	29498019	29498019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002910-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	218	681	0	ENST00000389048.3:c.1987G>C	p.Glu663Gln	p.E663Q	ENST00000389048	NM_004304.4	663	Gag/Cag																																																																														
FYN	2534	MSKCC	GRCh37	6	112020745	112020745	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002910-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	232	757	1	ENST00000368678.4:c.826C>T	p.Gln276Ter	p.Q276*	ENST00000368678		276	Cag/Tag																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871029	12871029	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002910-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			479	127	283	0	ENST00000228872.4:c.256G>T	p.Glu86Ter	p.E86*	ENST00000228872	NM_004064.3	86	Gag/Tag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336064	73336064	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002910-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			502	114	317	0	ENST00000377767.4:c.2339G>C	p.Arg780Thr	p.R780T	ENST00000377767	NM_014953.3	780	aGa/aCa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95598909	95598909	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002910-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			664	132	439	0	ENST00000343455.3:c.250C>T	p.Gln84Ter	p.Q84*	ENST00000343455	NM_177438.2	84	Cag/Tag																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865884	56865884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002910-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	255	729	0	ENST00000308159.5:c.1216G>A	p.Val406Met	p.V406M	ENST00000308159	NM_014669.4	406	Gtg/Atg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933311	39933311	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002910-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			922	176	646	0	ENST00000378444.4:c.1288C>T	p.Gln430Ter	p.Q430*	ENST00000378444	NM_001123385.1	430	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	99	182	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	119	170	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	288	291	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031970	26031970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	151	223	0	ENST00000244661.2:c.319G>A	p.Asp107Asn	p.D107N	ENST00000244661	NM_003537.3	107	Gac/Aac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373178	118373178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			623	316	518	1	ENST00000534358.1:c.6571C>T	p.Arg2191Ter	p.R2191*	ENST00000534358	NM_005933.3	2191	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087404	27087404	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	421	489	1	ENST00000324856.7:c.1978G>T	p.Gly660Ter	p.G660*	ENST00000324856	NM_006015.4	660	Gga/Tga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440372	52440372	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	218	244	0	ENST00000460680.1:c.680G>C	p.Arg227Pro	p.R227P	ENST00000460680	NM_004656.3	227	cGc/cCc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440379	52440379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	236	220	0	ENST00000460680.1:c.673G>A	p.Asp225Asn	p.D225N	ENST00000460680	NM_004656.3	225	Gac/Aac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806089	1806089	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	274	428	2	ENST00000260795.2:c.1108G>T	p.Gly370Cys	p.G370C	ENST00000260795		370	Ggc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721577	176721577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	278	454	2	ENST00000439151.2:c.7208C>T	p.Ser2403Leu	p.S2403L	ENST00000439151	NM_022455.4	2403	tCa/tTa																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056283	26056283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	283	477	0	ENST00000343677.2:c.374G>A	p.Gly125Glu	p.G125E	ENST00000343677	NM_005319.3	125	gGa/gAa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850987	63850987	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	30	344	0	ENST00000279873.7:c.1765G>T	p.Glu589Ter	p.E589*	ENST00000279873	NM_032199.2	589	Gaa/Taa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279606	123279606	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	90	349	0	ENST00000358487.5:c.826T>A	p.Phe276Ile	p.F276I	ENST00000358487	NM_000141.4	276	Ttt/Att																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30264333	30264333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			65	18	53	1	ENST00000322652.5:c.68G>A	p.Gly23Asp	p.G23D	ENST00000322652	NM_015355.2	23	gGc/gAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657668	37657668	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			641	175	386	0	ENST00000447079.4:c.2585G>C	p.Cys862Ser	p.C862S	ENST00000447079	NM_015083.1	862	tGt/tCt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872213	45872213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	274	430	1	ENST00000391945.4:c.221C>T	p.Ser74Leu	p.S74L	ENST00000391945	NM_000400.3	74	tCa/tTa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950067	44950067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1211	147	630	0	ENST00000377967.4:c.3836G>A	p.Arg1279Gln	p.R1279Q	ENST00000377967	NM_021140.2	1279	cGa/cAa																																																																														
REL	5966	MSKCC	GRCh37	2	61144055	61144077	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGGTGAGACTGTGTTTTCAAG	TGTGGTGAGACTGTGTTTTCAAG	-			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	255	411	0	ENST00000295025.8:c.439_461del	p.Val147PhefsTer4	p.V147Ffs*4	ENST00000295025	NM_002908.2	146	aaTGTGGTGAGACTGTGTTTTCAAGtt/aatt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44733136	44733183	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCGTTAACGAGTAAACTGTGTCTGTCTCCACAGCCGCCTCTTTGGGT	AGCGTTAACGAGTAAACTGTGTCTGTCTCCACAGCCGCCTCTTTGGGT	-			P-0002953-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			534	312	430	1	ENST00000377967.4:c.162-34_175del		p.X54_splice	ENST00000377967	NM_021140.2	54																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002967-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			78	86	190	0				ENST00000310581	NM_198253.2																																																																																
CTCF	10664	MSKCC	GRCh37	16	67645156	67645156	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002967-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	82	401	0	ENST00000264010.4:c.421G>T	p.Glu141Ter	p.E141*	ENST00000264010	NM_006565.3	141	Gaa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004856	16004856	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002967-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			161	19	416	0	ENST00000268712.3:c.2398C>T	p.Gln800Ter	p.Q800*	ENST00000268712	NM_006311.3	800	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			932	116	588	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
WT1	7490	MSKCC	GRCh37	11	32456789	32456789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	34	240	0	ENST00000332351.3:c.103G>T	p.Asp35Tyr	p.D35Y	ENST00000332351	NM_024426.4	35	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380238	25380238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			892	128	612	0	ENST00000256078.4:c.220A>G	p.Thr74Ala	p.T74A	ENST00000256078	NM_033360.2	74	Act/Gct																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987085	36987085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	37	381	0	ENST00000354822.5:c.604C>G	p.Gln202Glu	p.Q202E	ENST00000354822	NM_001079668.2	202	Cag/Gag																																																																														
CDH1	999	MSKCC	GRCh37	16	68771319	68771319	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	36	240	0	ENST00000261769.5:c.1A>T	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	Atg/Ttg																																																																														
STK11	6794	MSKCC	GRCh37	19	1220698	1220698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	98	536	2	ENST00000326873.7:c.716G>C	p.Trp239Ser	p.W239S	ENST00000326873	NM_000455.4	239	tGg/tCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971192	21971192	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	13	145	0	ENST00000304494.5:c.166del	p.Ser56AlafsTer90	p.S56Afs*90	ENST00000304494	NM_000077.4	56	Agc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971192	21971192	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	13	145	0	ENST00000304494.5:c.166del	p.Ser56AlafsTer90	p.S56Afs*90	ENST00000304494	NM_000077.4	56	Agc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971192	21971192	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	13	145	0	ENST00000304494.5:c.166del	p.Ser56AlafsTer90	p.S56Afs*90	ENST00000304494	NM_000077.4	56	Agc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	640	394	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	374	220	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40747084	40747084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			970	369	461	2	ENST00000373198.4:c.2998G>A	p.Ala1000Thr	p.A1000T	ENST00000373198	NM_133170.3	1000	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106732	27106732	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	586	497	0	ENST00000324856.7:c.6343C>T	p.Gln2115Ter	p.Q2115*	ENST00000324856	NM_006015.4	2115	Cag/Tag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703616	47703616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	120	557	0	ENST00000233146.2:c.2116G>A	p.Asp706Asn	p.D706N	ENST00000233146	NM_000251.2	706	Gac/Aac																																																																														
MSH2	4436	MSKCC	GRCh37	2	47710037	47710037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			843	98	468	0	ENST00000233146.2:c.2754G>T	p.Lys918Asn	p.K918N	ENST00000233146	NM_000251.2	918	aaG/aaT																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159039	143159039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	56	553	0	ENST00000262992.4:c.814C>T	p.His272Tyr	p.H272Y	ENST00000262992	NM_001101669.1	272	Cac/Tac																																																																														
PMS2	5395	MSKCC	GRCh37	7	6036981	6036981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			786	405	563	0	ENST00000265849.7:c.779C>G	p.Ser260Cys	p.S260C	ENST00000265849	NM_000535.5	260	tCc/tGc																																																																														
RB1	5925	MSKCC	GRCh37	13	48954378	48954378	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0002991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	447	397	0	ENST00000267163.4:c.1498+1G>T		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																															
BLM	641	MSKCC	GRCh37	15	91312695	91312695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			774	369	590	0	ENST00000355112.3:c.2434A>G	p.Lys812Glu	p.K812E	ENST00000355112	NM_000057.2	812	Aaa/Gaa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42860398	42860398	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			966	132	525	0	ENST00000398585.3:c.479C>G	p.Ser160Ter	p.S160*	ENST00000398585	NM_001135099.1	160	tCa/tGa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123210224	123210224	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	313	296	0	ENST00000218089.9:c.2576A>G	p.His859Arg	p.H859R	ENST00000218089	NM_001042749.1	859	cAc/cGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425675	49425680	+	inframe_deletion	In_Frame_Del	DEL	TGTCTG	TGTCTG	-			P-0002991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	234	392	0	ENST00000301067.7:c.12808_12813del	p.Gln4270_Thr4271del	p.Q4270_T4271del	ENST00000301067	NM_003482.3	4270	CAGACA/-																																																																														
MTOR	2475	MSKCC	GRCh37	1	11300507	11300507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	107	390	0	ENST00000361445.4:c.1639C>T	p.Leu547Phe	p.L547F	ENST00000361445	NM_004958.3	547	Ctt/Ttt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120529649	120529649	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			696	242	345	1	ENST00000256646.2:c.808C>T	p.Gln270Ter	p.Q270*	ENST00000256646	NM_024408.3	270	Cag/Tag																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551502	150551502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	242	400	0	ENST00000369026.2:c.505G>A	p.Glu169Lys	p.E169K	ENST00000369026	NM_021960.4	169	Gag/Aag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849035	156849035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	143	358	0	ENST00000524377.1:c.1927G>A	p.Gly643Ser	p.G643S	ENST00000524377	NM_002529.3	643	Ggt/Agt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085914	16085914	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143438192		P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	59	269	0	ENST00000281043.3:c.1090C>T	p.Pro364Ser	p.P364S	ENST00000281043	NM_005378.4	364	Ccc/Tcc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026813	48026813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			570	178	335	0	ENST00000234420.5:c.1691C>T	p.Ser564Leu	p.S564L	ENST00000234420	NM_000179.2	564	tCa/tTa																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204732676	204732676	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	108	325	0	ENST00000302823.3:c.11T>C	p.Leu4Pro	p.L4P	ENST00000302823	NM_005214.4	4	cTt/cCt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280750	41280750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	71	289	1	ENST00000349496.5:c.2263G>T	p.Asp755Tyr	p.D755Y	ENST00000349496	NM_001904.3	755	Gat/Tat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163221	47163221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	207	398	0	ENST00000409792.3:c.2905A>T	p.Ile969Leu	p.I969L	ENST00000409792	NM_014159.6	969	Ata/Tta																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670816	134670816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	85	199	0	ENST00000398015.3:c.727G>A	p.Asp243Asn	p.D243N	ENST00000398015	NM_004441.4	243	Gat/Aat																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825322	134825322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	92	342	0	ENST00000398015.3:c.838G>A	p.Glu280Lys	p.E280K	ENST00000398015	NM_004441.4	280	Gaa/Aaa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417834	138417834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			695	136	404	2	ENST00000289153.2:c.1685G>A	p.Arg562Gln	p.R562Q	ENST00000289153	NM_006219.2	562	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178943827	178943827	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	150	260	0	ENST00000263967.3:c.2494C>T	p.Arg832Ter	p.R832*	ENST00000263967	NM_006218.2	832	Cga/Tga																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167790	185167790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	116	433	0	ENST00000265026.3:c.1113C>A	p.His371Gln	p.H371Q	ENST00000265026	NM_004721.4	371	caC/caA																																																																														
FIP1L1	81608	MSKCC	GRCh37	4	54292044	54292044	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	91	233	0	ENST00000337488.6:c.929T>G	p.Leu310Ter	p.L310*	ENST00000337488	NM_030917.3	310	tTa/tGa																																																																														
KDR	3791	MSKCC	GRCh37	4	55953837	55953837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	83	369	0	ENST00000263923.4:c.3599C>T	p.Ser1200Phe	p.S1200F	ENST00000263923	NM_002253.2	1200	tCc/tTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467644	66467644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202165566		P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	84	324	0	ENST00000273854.3:c.625G>A	p.Gly209Arg	p.G209R	ENST00000273854	NM_004439.5	209	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	50	165	0				ENST00000310581	NM_198253.2																																																																																
FLT4	2324	MSKCC	GRCh37	5	180039520	180039520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	80	405	0	ENST00000261937.6:c.3523G>T	p.Gly1175Cys	p.G1175C	ENST00000261937	NM_182925.4	1175	Ggc/Tgc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554840	106554840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	90	243	0	ENST00000369096.4:c.1957C>T	p.His653Tyr	p.H653Y	ENST00000369096	NM_001198.3	653	Cat/Tat																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137527335	137527335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	146	346	0	ENST00000367739.4:c.311C>T	p.Ala104Val	p.A104V	ENST00000367739	NM_000416.2	104	gCc/gTc																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683653	162683653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	35	345	0	ENST00000366898.1:c.316G>A	p.Asp106Asn	p.D106N	ENST00000366898	NM_004562.2	106	Gac/Aac																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450244	50450244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	142	311	1	ENST00000331340.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000331340	NM_006060.4	143	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55233033	55233033	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			723	108	302	0	ENST00000275493.2:c.1783T>G	p.Cys595Gly	p.C595G	ENST00000275493	NM_005228.3	595	Tgc/Ggc																																																																														
HGF	3082	MSKCC	GRCh37	7	81381497	81381498	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			619	106	418	0	ENST00000222390.5:c.563_564delinsAA	p.Trp188Ter	p.W188*	ENST00000222390	NM_000601.4	188	tGG/tAA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499755	8499755	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			939	83	397	0	ENST00000356435.5:c.2214T>A	p.Asn738Lys	p.N738K	ENST00000356435		738	aaT/aaA																																																																														
SYK	6850	MSKCC	GRCh37	9	93606404	93606404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	73	302	0	ENST00000375746.1:c.224C>T	p.Ala75Val	p.A75V	ENST00000375746	NM_001174167.1	75	gCc/gTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396531	139396532	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	184	292	0	ENST00000277541.6:c.5393_5394delinsTA	p.Lys1798Ile	p.K1798I	ENST00000277541	NM_017617.3	1798	aAG/aTA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413049	139413049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	220	302	0	ENST00000277541.6:c.1093C>T	p.Arg365Cys	p.R365C	ENST00000277541	NM_017617.3	365	Cgc/Tgc																																																																														
TET1	80312	MSKCC	GRCh37	10	70441156	70441156	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			654	81	339	0	ENST00000373644.4:c.4825G>A	p.Glu1609Lys	p.E1609K	ENST00000373644	NM_030625.2	1609	Gaa/Aaa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156738	2156738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	87	329	0	ENST00000434045.2:c.184G>A	p.Gly62Arg	p.G62R	ENST00000434045	NM_001127598.1	62	Ggg/Agg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118367017	118367017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	266	361	2	ENST00000534358.1:c.5599C>T	p.Pro1867Ser	p.P1867S	ENST00000534358	NM_005933.3	1867	Ccc/Tcc																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945063	31945063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	61	204	0	ENST00000340398.3:c.38G>A	p.Gly13Asp	p.G13D	ENST00000340398	NM_001013699.2	13	gGt/gAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416638	49416638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	55	213	0	ENST00000301067.7:c.16073C>T	p.Thr5358Ile	p.T5358I	ENST00000301067	NM_003482.3	5358	aCc/aTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425449	49425449	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	109	402	0	ENST00000301067.7:c.13039C>T	p.Gln4347Ter	p.Q4347*	ENST00000301067	NM_003482.3	4347	Cag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488252	56488252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	61	353	0	ENST00000267101.3:c.1771C>T	p.His591Tyr	p.H591Y	ENST00000267101	NM_001982.3	591	Cat/Tat																																																																														
MDM2	4193	MSKCC	GRCh37	12	69203058	69203058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	189	324	0	ENST00000462284.1:c.85G>A	p.Glu29Lys	p.E29K	ENST00000462284	NM_002392.5	29	Gaa/Aaa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112942555	112942555	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	240	309	0	ENST00000351677.2:c.1769A>G	p.Lys590Arg	p.K590R	ENST00000351677	NM_002834.3	590	aAa/aGa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21555605	21555605	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	161	352	0	ENST00000382592.4:c.2665G>T	p.Gly889Trp	p.G889W	ENST00000382592	NM_014572.2	889	Ggg/Tgg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589732	28589732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	166	347	0	ENST00000241453.7:c.2648C>T	p.Ser883Leu	p.S883L	ENST00000241453	NM_004119.2	883	tCa/tTa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335641	73335641	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	138	282	0	ENST00000377767.4:c.2530G>T	p.Gly844Ter	p.G844*	ENST00000377767	NM_014953.3	844	Gga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435246	110435246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	55	99	0	ENST00000375856.3:c.3155C>T	p.Thr1052Ile	p.T1052I	ENST00000375856	NM_003749.2	1052	aCc/aTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574706	95574706	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	100	344	0	ENST00000343455.3:c.2391T>G	p.Asp797Glu	p.D797E	ENST00000343455	NM_177438.2	797	gaT/gaG																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130270	2130270	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	196	390	0	ENST00000219476.3:c.3502A>T	p.Lys1168Ter	p.K1168*	ENST00000219476	NM_000548.3	1168	Aag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	126	403	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885956	59885956	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28997569		P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	99	311	0	ENST00000259008.2:c.790C>T	p.Arg264Trp	p.R264W	ENST00000259008	NM_032043.2	264	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5258104	5258104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	193	381	0	ENST00000357368.4:c.630C>G	p.Asp210Glu	p.D210E	ENST00000357368	NM_002850.3	210	gaC/gaG																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138521	11138521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	196	419	1	ENST00000344626.4:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000344626	NM_003072.3	1093	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281566	15281566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	242	408	0	ENST00000263388.2:c.4807G>A	p.Asp1603Asn	p.D1603N	ENST00000263388	NM_000435.2	1603	Gat/Aat																																																																														
SRC	6714	MSKCC	GRCh37	20	36031693	36031693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	191	435	0	ENST00000358208.4:c.1522G>A	p.Glu508Lys	p.E508K	ENST00000358208		508	Gag/Aag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933871	39933871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	113	182	1	ENST00000378444.4:c.728G>A	p.Arg243His	p.R243H	ENST00000378444	NM_001123385.1	243	cGc/cAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030467	47030467	+	intron_variant	Intron	SNP	G	G	A			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	216	203	0	ENST00000329236.7:c.201+1570G>A		p.*67*	ENST00000329236	NM_001204466.1																																																																																
TP53	7157	MSKCC	GRCh37	17	7577077	7577082	+	inframe_deletion	In_Frame_Del	DEL	CTCTTC	CTCTTC	-			P-0002998-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			560	111	382	0	ENST00000269305.4:c.856_861del	p.Glu286_Glu287del	p.E286_E287del	ENST00000269305	NM_001126112.2	286	GAAGAG/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003000-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	38	274	0				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9858085	9858085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003000-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			865	105	646	0	ENST00000330684.3:c.3316C>G	p.Leu1106Val	p.L1106V	ENST00000330684	NM_001134407.1	1106	Ctg/Gtg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938565	44938565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003000-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	74	279	0	ENST00000377967.4:c.3113A>G	p.Tyr1038Cys	p.Y1038C	ENST00000377967	NM_021140.2	1038	tAc/tGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938577	44938577	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003000-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	73	261	0	ENST00000377967.4:c.3125C>G	p.Ser1042Ter	p.S1042*	ENST00000377967	NM_021140.2	1042	tCa/tGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023778	27023778	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003000-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	56	390	0	ENST00000324856.7:c.884del	p.Leu295ProfsTer68	p.L295Pfs*68	ENST00000324856	NM_006015.4	295	cTc/cc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061765	38061766	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003000-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			534	56	401	0	ENST00000250448.2:c.223dup	p.Ala75GlyfsTer152	p.A75Gfs*152	ENST00000250448	NM_004496.3	75	gcc/gGcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	46	393	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0003008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	33	295	0	ENST00000269305.4:c.920-1G>C		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121432137	121432137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	42	369	0	ENST00000257555.6:c.884C>T	p.Pro295Leu	p.P295L	ENST00000257555		295	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCGGGTGAGAGTGGCG	GGGTCGGGTGAGAGTGGCG	-			P-0003008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	22	214	0	ENST00000304494.5:c.225_243del	p.Ala76CysfsTer64	p.A76Cfs*64	ENST00000304494	NM_000077.4	75	ccCGCCACTCTCACCCGACCC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCGGGTGAGAGTGGCG	GGGTCGGGTGAGAGTGGCG	-			P-0003008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	22	214	0	ENST00000304494.5:c.225_243del	p.Ala76CysfsTer64	p.A76Cfs*64	ENST00000304494	NM_000077.4	75	ccCGCCACTCTCACCCGACCC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCGGGTGAGAGTGGCG	GGGTCGGGTGAGAGTGGCG	-			P-0003008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	22	214	0	ENST00000304494.5:c.225_243del	p.Ala76CysfsTer64	p.A76Cfs*64	ENST00000304494	NM_000077.4	75	ccCGCCACTCTCACCCGACCC/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	26	146	0				ENST00000310581	NM_198253.2																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50467699	50467699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			769	61	449	0	ENST00000331340.3:c.934G>A	p.Asp312Asn	p.D312N	ENST00000331340	NM_006060.4	312	Gac/Aac																																																																														
PAK7	57144	MSKCC	GRCh37	20	9547031	9547031	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	17	141	0	ENST00000353224.5:c.991G>A	p.Val331Met	p.V331M	ENST00000353224	NM_177990.2	331	Gtg/Atg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411927	63411927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			671	44	755	0	ENST00000330258.3:c.1240C>A	p.Gln414Lys	p.Q414K	ENST00000330258	NM_152424.3	414	Caa/Aaa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729086	66729103	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AATTCATCTGGAGATCAA	AATTCATCTGGAGATCAA	-			P-0003010-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			818	114	535	0	ENST00000307102.5:c.295_312del	p.Ile99_Lys104del	p.I99_K104del	ENST00000307102	NM_002755.3	98	ctAATTCATCTGGAGATCAAa/cta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	67	129	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	213	242	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	207	437	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188183	11188183	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	123	137	0	ENST00000361445.4:c.5911G>A	p.Ala1971Thr	p.A1971T	ENST00000361445	NM_004958.3	1971	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057691	27057691	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	274	319	0	ENST00000324856.7:c.1399C>T	p.Gln467Ter	p.Q467*	ENST00000324856	NM_006015.4	467	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100291	27100291	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	186	237	0	ENST00000324856.7:c.4005-2A>G		p.X1335_splice	ENST00000324856	NM_006015.4	1335																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156843424	156843424	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	67	107	0	ENST00000524377.1:c.851-1G>T		p.X284_splice	ENST00000524377	NM_002529.3	284																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128018834	128018834	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	207	484	1	ENST00000285398.2:c.2034A>T	p.Arg678Ser	p.R678S	ENST00000285398	NM_000122.1	678	agA/agT																																																																														
CUL3	8452	MSKCC	GRCh37	2	225339027	225339027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	147	569	0	ENST00000264414.4:c.2242C>T	p.Leu748Phe	p.L748F	ENST00000264414	NM_003590.4	748	Ctt/Ttt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661591	227661591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	220	421	2	ENST00000305123.5:c.1864G>A	p.Val622Met	p.V622M	ENST00000305123	NM_005544.2	622	Gtg/Atg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662438	117662438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	134	536	0	ENST00000368508.3:c.4939G>A	p.Glu1647Lys	p.E1647K	ENST00000368508	NM_002944.2	1647	Gag/Aag																																																																														
PMS2	5395	MSKCC	GRCh37	7	6048638	6048638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	209	249	0	ENST00000265849.7:c.13G>A	p.Glu5Lys	p.E5K	ENST00000265849	NM_000535.5	5	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877954	151877954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	156	264	1	ENST00000262189.6:c.6991G>A	p.Glu2331Lys	p.E2331K	ENST00000262189	NM_170606.2	2331	Gag/Aag																																																																														
NBN	4683	MSKCC	GRCh37	8	90967728	90967728	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	110	320	0	ENST00000265433.3:c.1180A>G	p.Arg394Gly	p.R394G	ENST00000265433	NM_002485.4	394	Aga/Gga																																																																														
FANCC	2176	MSKCC	GRCh37	9	97876927	97876927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	220	478	0	ENST00000289081.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000289081	NM_000136.2	380	Gaa/Aaa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400009	139400009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	174	202	0	ENST00000277541.6:c.4339G>A	p.Glu1447Lys	p.E1447K	ENST00000277541	NM_017617.3	1447	Gag/Aag																																																																														
TET1	80312	MSKCC	GRCh37	10	70405476	70405476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	175	444	0	ENST00000373644.4:c.2990C>T	p.Ser997Leu	p.S997L	ENST00000373644	NM_030625.2	997	tCa/tTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392067	118392067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	164	335	0	ENST00000534358.1:c.11578G>A	p.Glu3860Lys	p.E3860K	ENST00000534358	NM_005933.3	3860	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448443	49448443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	169	293	2	ENST00000301067.7:c.268G>A	p.Asp90Asn	p.D90N	ENST00000301067	NM_003482.3	90	Gat/Aat																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495489	56495489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	203	264	0	ENST00000267101.3:c.3679G>A	p.Val1227Met	p.V1227M	ENST00000267101	NM_001982.3	1227	Gtg/Atg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495511	56495511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	225	261	0	ENST00000267101.3:c.3701C>T	p.Ser1234Phe	p.S1234F	ENST00000267101	NM_001982.3	1234	tCt/tTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133219495	133219495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	172	295	0	ENST00000320574.5:c.4639C>A	p.Pro1547Thr	p.P1547T	ENST00000320574	NM_006231.2	1547	Cca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577599	7577599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	151	153	0	ENST00000269305.4:c.682G>C	p.Asp228His	p.D228H	ENST00000269305	NM_001126112.2	228	Gac/Cac																																																																														
NF1	4763	MSKCC	GRCh37	17	29683495	29683495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	123	235	0	ENST00000358273.4:c.7633G>C	p.Asp2545His	p.D2545H	ENST00000358273	NM_001042492.2	2545	Gat/Cat																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223325	2223325	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	162	214	0	ENST00000398665.3:c.3436C>G	p.Pro1146Ala	p.P1146A	ENST00000398665	NM_032482.2	1146	Ccg/Gcg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872219	45872219	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	187	191	0	ENST00000391945.4:c.215A>G	p.Tyr72Cys	p.Y72C	ENST00000391945	NM_000400.3	72	tAc/tGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877454	40877454	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	134	278	0	ENST00000373198.4:c.2242A>T	p.Thr748Ser	p.T748S	ENST00000373198	NM_133170.3	748	Acc/Tcc																																																																														
EP300	2033	MSKCC	GRCh37	22	41525934	41525934	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	196	317	0	ENST00000263253.7:c.1209G>A	p.Trp403Ter	p.W403*	ENST00000263253	NM_001429.3	403	tgG/tgA																																																																														
BTK	695	MSKCC	GRCh37	X	100608892	100608892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	252	332	0	ENST00000308731.7:c.1716C>A	p.Ser572Arg	p.S572R	ENST00000308731	NM_000061.2	572	agC/agA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372571	118372575	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTA	AGGTA	-			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	174	266	0	ENST00000534358.1:c.6505_6505+4del		p.X2169_splice	ENST00000534358	NM_005933.3	2169																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56481903	56481905	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0003024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	188	316	0	ENST00000267101.3:c.833_835del	p.Thr278del	p.T278del	ENST00000267101	NM_001982.3	277	caCACc/cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	56	295	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	75	188	0				ENST00000310581	NM_198253.2																																																																																
ASXL2	55252	MSKCC	GRCh37	2	26101054	26101054	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1287	268	760	0	ENST00000435504.4:c.38G>A	p.Trp13Ter	p.W13*	ENST00000435504		13	tGg/tAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488700	212488700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			882	140	649	0	ENST00000342788.4:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000342788	NM_005235.2	717	Gag/Aag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440328	52440328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			711	101	495	0	ENST00000460680.1:c.724G>T	p.Glu242Ter	p.E242*	ENST00000460680	NM_004656.3	242	Gag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442078	52442078	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	89	387	0	ENST00000460680.1:c.271T>C	p.Cys91Arg	p.C91R	ENST00000460680	NM_004656.3	91	Tgt/Cgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538904	187538904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			879	279	678	0	ENST00000441802.2:c.8836G>A	p.Asp2946Asn	p.D2946N	ENST00000441802	NM_005245.3	2946	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163252	32163252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1135	322	838	0	ENST00000375023.3:c.5974G>C	p.Glu1992Gln	p.E1992Q	ENST00000375023	NM_004557.3	1992	Gaa/Caa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287254	38287254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55642501		P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			827	230	628	0	ENST00000425967.3:c.403G>A	p.Val135Ile	p.V135I	ENST00000425967	NM_001174067.1	135	Gta/Ata																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370709	55370709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	67	221	0	ENST00000297316.4:c.11C>A	p.Pro4Gln	p.P4Q	ENST00000297316	NM_022454.3	4	cCg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	77	316	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	77	316	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	77	316	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
RB1	5925	MSKCC	GRCh37	13	49039240	49039240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			712	221	576	0	ENST00000267163.4:c.2318C>T	p.Ser773Phe	p.S773F	ENST00000267163	NM_000321.2	773	tCc/tTc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039392	49039392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			819	284	890	0	ENST00000267163.4:c.2377C>T	p.Pro793Ser	p.P793S	ENST00000267163	NM_000321.2	793	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			749	280	639	0	ENST00000269305.4:c.811G>C	p.Glu271Gln	p.E271Q	ENST00000269305	NM_001126112.2	271	Gag/Cag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15995180	15995180	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			993	267	652	1	ENST00000268712.3:c.3013G>T	p.Glu1005Ter	p.E1005*	ENST00000268712	NM_006311.3	1005	Gaa/Taa																																																																														
ERG	2078	MSKCC	GRCh37	21	39763632	39763632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003029-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	186	505	0	ENST00000288319.7:c.820C>G	p.Gln274Glu	p.Q274E	ENST00000288319	NM_182918.3	274	Caa/Gaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0003051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	24	160	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	105	344	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	77	270	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	77	270	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	77	270	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418394	49418394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	136	300	0	ENST00000301067.7:c.16019G>A	p.Arg5340Gln	p.R5340Q	ENST00000301067	NM_003482.3	5340	cGa/cAa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146844	185146844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	28	182	0	ENST00000265026.3:c.475G>A	p.Asp159Asn	p.D159N	ENST00000265026	NM_004721.4	159	Gat/Aat																																																																														
BRAF	673	MSKCC	GRCh37	7	140534507	140534507	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	45	416	0	ENST00000288602.6:c.406T>C	p.Ser136Pro	p.S136P	ENST00000288602	NM_004333.4	136	Tca/Cca																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575126	64575126	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	35	344	0	ENST00000337652.1:c.696C>G	p.Tyr232Ter	p.Y232*	ENST00000337652	NM_130803.2	232	taC/taG																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396908	396908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	137	467	3	ENST00000262320.3:c.118G>A	p.Ala40Thr	p.A40T	ENST00000262320	NM_003502.3	40	Gcc/Acc																																																																														
INSR	3643	MSKCC	GRCh37	19	7267680	7267680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	81	347	0	ENST00000302850.5:c.328C>T	p.Arg110Trp	p.R110W	ENST00000302850	NM_000208.2	110	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	43	95	0				ENST00000310581	NM_198253.2																																																																																
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	218	350	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	304	377	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11291032	11291032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	329	489	0	ENST00000361445.4:c.2729G>A	p.Arg910Gln	p.R910Q	ENST00000361445	NM_004958.3	910	cGg/cAg																																																																														
MPL	4352	MSKCC	GRCh37	1	43804373	43804373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	190	303	0	ENST00000372470.3:c.373C>T	p.Leu125Phe	p.L125F	ENST00000372470	NM_005373.2	125	Ctc/Ttc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728809	190728809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	292	260	0	ENST00000441310.2:c.2197C>T	p.Pro733Ser	p.P733S	ENST00000441310	NM_000534.4	733	Cct/Tct																																																																														
RAF1	5894	MSKCC	GRCh37	3	12632463	12632463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	215	329	0	ENST00000251849.4:c.1204C>A	p.His402Asn	p.H402N	ENST00000251849	NM_002880.3	402	Cat/Aat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47079233	47079233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	282	358	0	ENST00000409792.3:c.7273C>T	p.Pro2425Ser	p.P2425S	ENST00000409792	NM_014159.6	2425	Cca/Tca																																																																														
TP63	8626	MSKCC	GRCh37	3	189586386	189586386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	110	158	0	ENST00000264731.3:c.1010G>A	p.Arg337Gln	p.R337Q	ENST00000264731	NM_003722.4	337	cGa/cAa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149452997	149452997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	243	398	0	ENST00000286301.3:c.949G>A	p.Glu317Lys	p.E317K	ENST00000286301	NM_005211.3	317	Gag/Aag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518079	176518079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	205	389	0	ENST00000292408.4:c.577G>A	p.Gly193Arg	p.G193R	ENST00000292408	NM_213647.1	193	Ggg/Agg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675456	30675456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	267	407	0	ENST00000376406.3:c.2900C>T	p.Pro967Leu	p.P967L	ENST00000376406	NM_014641.2	967	cCa/cTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273086	55273086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	278	483	0	ENST00000275493.2:c.3409G>A	p.Glu1137Lys	p.E1137K	ENST00000275493	NM_005228.3	1137	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878073	151878073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	183	236	0	ENST00000262189.6:c.6872C>T	p.Ser2291Phe	p.S2291F	ENST00000262189	NM_170606.2	2291	tCc/tTc																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	461	661	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653814	89653814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	601	311	0	ENST00000371953.3:c.112C>T	p.Pro38Ser	p.P38S	ENST00000371953	NM_000314.4	38	Cct/Tct																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134688	41134688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	357	676	0	ENST00000379561.5:c.940C>T	p.Arg314Cys	p.R314C	ENST00000379561	NM_002015.3	314	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829143	72829143	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	269	554	0	ENST00000268489.5:c.7438T>G	p.Leu2480Val	p.L2480V	ENST00000268489	NM_006885.3	2480	Ttg/Gtg																																																																														
INSR	3643	MSKCC	GRCh37	19	7167992	7167992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	227	372	0	ENST00000302850.5:c.1597T>C	p.Phe533Leu	p.F533L	ENST00000302850	NM_000208.2	533	Ttc/Ctc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944407	40944407	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	202	388	0	ENST00000373198.4:c.2095A>T	p.Lys699Ter	p.K699*	ENST00000373198	NM_133170.3	699	Aaa/Taa																																																																														
MED12	9968	MSKCC	GRCh37	X	70356757	70356757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	345	628	0	ENST00000374080.3:c.5429G>A	p.Gly1810Asp	p.G1810D	ENST00000374080		1810	gGc/gAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0003078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	100	99	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0003078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	100	99	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0003078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	100	99	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
AKT3	10000	MSKCC	GRCh37	1	243778438	243778438	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	174	304	0	ENST00000263826.5:c.587A>C	p.Glu196Ala	p.E196A	ENST00000263826	NM_005465.4	196	gAa/gCa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265427	152265427	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	113	202	0	ENST00000206249.3:c.880A>C	p.Ser294Arg	p.S294R	ENST00000206249	NM_000125.3	294	Agc/Cgc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729892	41729892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	315	518	0	ENST00000242208.4:c.637G>A	p.Ala213Thr	p.A213T	ENST00000242208	NM_002192.2	213	Gct/Act																																																																														
LMO1	4004	MSKCC	GRCh37	11	8252018	8252018	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	166	273	0	ENST00000335790.3:c.59A>G	p.Lys20Arg	p.K20R	ENST00000335790	NM_002315.2	20	aAg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	205	241	0	ENST00000269305.4:c.737T>A	p.Met246Lys	p.M246K	ENST00000269305	NM_001126112.2	246	aTg/aAg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221332	1221361	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTGAAAGGTGGGAGCCTCATCCCTCTGCC	GCTGAAAGGTGGGAGCCTCATCCCTCTGCC	-			P-0003078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	35	214	0	ENST00000326873.7:c.855_862+22delGCTGAAAGGTGGGAGCCTCATCCCTCTGCC		p.X285_splice	ENST00000326873	NM_000455.4	285																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922789	44922790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	283	179	0	ENST00000377967.4:c.1652dup	p.Ser552Ter	p.S552*	ENST00000377967	NM_021140.2	550	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	13	197	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																														
ALK	238	MSKCC	GRCh37	2	29606696	29606696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	95	262	0	ENST00000389048.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000389048	NM_004304.4	395	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	93	170	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974685	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	88	259	0	ENST00000304494.5:c.142_143delinsTT	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	CCg/TTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974685	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	88	259	0	ENST00000304494.5:c.142_143delinsTT	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	CCg/TTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120484378	120484378	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	96	229	0	ENST00000256646.2:c.2753-1G>A		p.X918_splice	ENST00000256646	NM_024408.3	918																																																																															
RFWD2	64326	MSKCC	GRCh37	1	175957434	175957434	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	161	326	0	ENST00000367669.3:c.1962T>A	p.Tyr654Ter	p.Y654*	ENST00000367669	NM_022457.5	654	taT/taA																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085671	16085671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	100	269	0	ENST00000281043.3:c.847G>A	p.Glu283Lys	p.E283K	ENST00000281043	NM_005378.4	283	Gag/Aag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182526	99182526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	99	238	0	ENST00000074304.5:c.2329C>T	p.Pro777Ser	p.P777S	ENST00000074304	NM_001134224.1	777	Ccg/Tcg																																																																														
CASP8	841	MSKCC	GRCh37	2	202149562	202149562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	162	244	0	ENST00000358485.4:c.1003G>A	p.Glu335Lys	p.E335K	ENST00000358485	NM_001080125.1	335	Gag/Aag																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735565	204735565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	75	128	0	ENST00000302823.3:c.366G>A	p.Met122Ile	p.M122I	ENST00000302823	NM_005214.4	122	atG/atA																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732963	30732963	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	193	204	2	ENST00000359013.4:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000359013	NM_001024847.2	551	Gag/Tag																																																																														
ATR	545	MSKCC	GRCh37	3	142168287	142168287	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	130	189	0	ENST00000350721.4:c.7919G>A	p.Trp2640Ter	p.W2640*	ENST00000350721	NM_001184.3	2640	tGg/tAg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430921	181430921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	121	298	0	ENST00000325404.1:c.773C>T	p.Ser258Phe	p.S258F	ENST00000325404	NM_003106.3	258	tCc/tTc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750440	41750440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	92	207	0	ENST00000226382.2:c.188G>A	p.Gly63Glu	p.G63E	ENST00000226382	NM_003924.3	63	gGa/gAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156546	55156546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	129	256	0	ENST00000257290.5:c.2947G>A	p.Asp983Asn	p.D983N	ENST00000257290	NM_006206.4	983	Gac/Aac																																																																														
KDR	3791	MSKCC	GRCh37	4	55980402	55980402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	133	311	0	ENST00000263923.4:c.689C>T	p.Pro230Leu	p.P230L	ENST00000263923	NM_002253.2	230	cCg/cTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231742	66231742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	117	250	0	ENST00000273854.3:c.1958C>T	p.Pro653Leu	p.P653L	ENST00000273854	NM_004439.5	653	cCa/cTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510195	187510195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	112	240	0	ENST00000441802.2:c.13318G>A	p.Glu4440Lys	p.E4440K	ENST00000441802	NM_005245.3	4440	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1294346	1294346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	63	120	0	ENST00000310581.5:c.655C>T	p.Pro219Ser	p.P219S	ENST00000310581	NM_198253.2	219	Ccg/Tcg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755615	57755615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	78	188	0	ENST00000274289.3:c.172C>T	p.His58Tyr	p.H58Y	ENST00000274289	NM_006622.3	58	Cac/Tac																																																																														
RASA1	5921	MSKCC	GRCh37	5	86658485	86658485	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	84	143	0	ENST00000274376.6:c.1450A>T	p.Lys484Ter	p.K484*	ENST00000274376	NM_002890.2	484	Aag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170313	32170313	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201260854		P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	70	155	0	ENST00000375023.3:c.3295G>A	p.Gly1099Arg	p.G1099R	ENST00000375023	NM_004557.3	1099	Gga/Aga																																																																														
PIM1	5292	MSKCC	GRCh37	6	37139054	37139056	+	missense_variant	Missense_Mutation	ONP	TTC	TTC	CTT			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	83	211	0	ENST00000373509.5:c.394_396delinsCTT	p.Phe132Leu	p.F132L	ENST00000373509	NM_002648.3	132	TTC/CTT																																																																														
FYN	2534	MSKCC	GRCh37	6	112041150	112041151	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	147	384	0	ENST00000368678.4:c.104_105delinsTT	p.Thr35Ile	p.T35I	ENST00000368678		35	aCC/aTT																																																																														
PMS2	5395	MSKCC	GRCh37	7	6031606	6031606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	66	90	0	ENST00000265849.7:c.986C>T	p.Ser329Leu	p.S329L	ENST00000265849	NM_000535.5	329	tCa/tTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55233037	55233037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	135	257	0	ENST00000275493.2:c.1787C>T	p.Pro596Leu	p.P596L	ENST00000275493	NM_005228.3	596	cCg/cTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877885	151877885	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	122	176	0	ENST00000262189.6:c.7060C>T	p.Gln2354Ter	p.Q2354*	ENST00000262189	NM_170606.2	2354	Caa/Taa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399183	139399183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	121	169	0	ENST00000277541.6:c.4960C>T	p.Pro1654Ser	p.P1654S	ENST00000277541	NM_017617.3	1654	Cct/Tct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401167	139401168	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	152	178	0	ENST00000277541.6:c.3901_3901+1delinsAA		p.X1301_splice	ENST00000277541	NM_017617.3	1301																																																																															
RET	5979	MSKCC	GRCh37	10	43597810	43597810	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	158	322	0	ENST00000355710.3:c.358A>T	p.Thr120Ser	p.T120S	ENST00000355710	NM_020975.4	120	Acc/Tcc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852261	63852261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	103	195	0	ENST00000279873.7:c.3039G>T	p.Lys1013Asn	p.K1013N	ENST00000279873	NM_032199.2	1013	aaG/aaT																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910762	114910762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	192	466	0	ENST00000543371.1:c.881C>T	p.Pro294Leu	p.P294L	ENST00000543371	NM_001198531.1	294	cCt/cTt																																																																														
HRAS	3265	MSKCC	GRCh37	11	533782	533782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	103	291	0	ENST00000311189.7:c.274G>A	p.Asp92Asn	p.D92N	ENST00000311189		92	Gac/Aac																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125514523	125514523	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	134	219	0	ENST00000428830.2:c.1218A>C	p.Lys406Asn	p.K406N	ENST00000428830	NM_001114121.2	406	aaA/aaC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425665	49425665	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	69	199	0	ENST00000301067.7:c.12823C>T	p.Gln4275Ter	p.Q4275*	ENST00000301067	NM_003482.3	4275	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436362	49436362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	88	260	0	ENST00000301067.7:c.5849C>T	p.Ser1950Phe	p.S1950F	ENST00000301067	NM_003482.3	1950	tCc/tTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118758	115118758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	129	282	0	ENST00000257566.3:c.583G>A	p.Glu195Lys	p.E195K	ENST00000257566	NM_016569.3	195	Gaa/Aaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578275	28578275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	119	247	0	ENST00000241453.7:c.2896C>T	p.Pro966Ser	p.P966S	ENST00000241453	NM_004119.2	966	Cct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972504	32972504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	136	272	0	ENST00000380152.3:c.9854C>T	p.Pro3285Leu	p.P3285L	ENST00000380152		3285	cCc/cTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678460	88678460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	127	285	0	ENST00000360948.2:c.1076C>T	p.Ser359Phe	p.S359F	ENST00000360948	NM_001012338.2	359	tCc/tTc																																																																														
CDH1	999	MSKCC	GRCh37	16	68863600	68863600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	161	237	0	ENST00000261769.5:c.2339C>T	p.Pro780Leu	p.P780L	ENST00000261769	NM_004360.3	780	cCt/cTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821598	72821598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	26	80	0	ENST00000268489.5:c.10577G>A	p.Gly3526Asp	p.G3526D	ENST00000268489	NM_006885.3	3526	gGc/gAc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882954	89882954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	19	37	0	ENST00000389301.3:c.70G>A	p.Glu24Lys	p.E24K	ENST00000389301	NM_000135.2	24	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579314	7579314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	76	170	0	ENST00000269305.4:c.373A>C	p.Thr125Pro	p.T125P	ENST00000269305	NM_001126112.2	125	Acg/Ccg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974826	15974826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	147	314	0	ENST00000268712.3:c.4049C>T	p.Ser1350Phe	p.S1350F	ENST00000268712	NM_006311.3	1350	tCc/tTc																																																																														
RARA	5914	MSKCC	GRCh37	17	38487505	38487505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	90	287	0	ENST00000254066.5:c.35G>A	p.Gly12Glu	p.G12E	ENST00000254066	NM_000964.3	12	gGg/gAg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763487	59763487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	88	183	0	ENST00000259008.2:c.2615C>T	p.Ser872Leu	p.S872L	ENST00000259008	NM_032043.2	872	tCa/tTa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1620984	1620984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	105	307	0	ENST00000344749.5:c.1076C>T	p.Ser359Phe	p.S359F	ENST00000344749	NM_001136139.2	359	tCc/tTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302667	15302667	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	97	286	0	ENST00000263388.2:c.691C>T	p.Gln231Ter	p.Q231*	ENST00000263388	NM_000435.2	231	Cag/Tag																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792783	33792783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	16	56	0	ENST00000498907.2:c.538C>T	p.Pro180Ser	p.P180S	ENST00000498907	NM_004364.3	180	Cct/Tct																																																																														
CIC	23152	MSKCC	GRCh37	19	42797401	42797401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	75	201	0	ENST00000575354.2:c.3763G>A	p.Glu1255Lys	p.E1255K	ENST00000575354	NM_015125.3	1255	Gag/Aag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31016187	31016187	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	146	313	0	ENST00000375687.4:c.433C>G	p.Leu145Val	p.L145V	ENST00000375687	NM_015338.5	145	Ctt/Gtt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021634	31021634	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137920574		P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	87	145	0	ENST00000375687.4:c.1633C>T	p.Arg545Cys	p.R545C	ENST00000375687	NM_015338.5	545	Cgt/Tgt																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288356	21288357	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	144	333	0	ENST00000354336.3:c.601_602delinsTT	p.Pro201Leu	p.P201L	ENST00000354336	NM_005207.3	201	CCa/TTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41572822	41572822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	183	316	0	ENST00000263253.7:c.5107C>T	p.His1703Tyr	p.H1703Y	ENST00000263253	NM_001429.3	1703	Cac/Tac																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096521	178096526	+	inframe_deletion	In_Frame_Del	DEL	TGAGTT	TGAGTT	-			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	104	239	0	ENST00000397062.3:c.805_810del	p.Asn269_Ser270del	p.N269_S270del	ENST00000397062	NM_006164.4	269	AACTCA/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0003104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	26	73	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	183	75	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41275074	41275074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	57	275	0	ENST00000349496.5:c.1240A>G	p.Ile414Val	p.I414V	ENST00000349496	NM_001904.3	414	Ata/Gta																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967819	93967819	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0003131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	52	325	0	ENST00000369303.4:c.2108G>C	p.Arg703Thr	p.R703T	ENST00000369303	NM_004440.3	703	aGa/aCa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123276860	123276860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	110	300	0	ENST00000358487.5:c.1057C>A	p.His353Asn	p.H353N	ENST00000358487	NM_000141.4	353	Cac/Aac																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981761	101981761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	145	224	0	ENST00000282441.5:c.182C>G	p.Ser61Trp	p.S61W	ENST00000282441	NM_001130145.2	61	tCg/tGg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877314	28877314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	49	145	0	ENST00000282397.4:c.4007C>T	p.Pro1336Leu	p.P1336L	ENST00000282397	NM_002019.4	1336	cCa/cTa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37882031	37882031	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1790	214	274	0	ENST00000269571.5:c.2797G>C	p.Asp933His	p.D933H	ENST00000269571		933	Gac/Cac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023646	27023650	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCT	CGCCT	-			P-0003131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	154	214	0	ENST00000324856.7:c.753_757del	p.Pro252LeufsTer146	p.P252Lfs*146	ENST00000324856	NM_006015.4	251	cCGCCT/c																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0003225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	295	318	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0003225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	165	88	0				ENST00000310581	NM_198253.2																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	109	243	0	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106196627	106196627	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	101	292	0	ENST00000380013.4:c.4960C>T	p.Gln1654Ter	p.Q1654*	ENST00000380013	NM_001127208.2	1654	Cag/Tag																																																																														
SMO	6608	MSKCC	GRCh37	7	128852284	128852284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	271	207	0	ENST00000249373.3:c.2356G>A	p.Asp786Asn	p.D786N	ENST00000249373	NM_005631.4	786	Gac/Aac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589333	28589333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	606	277	1	ENST00000241453.7:c.2714G>A	p.Gly905Glu	p.G905E	ENST00000241453	NM_004119.2	905	gGa/gAa																																																																														
BLM	641	MSKCC	GRCh37	15	91310143	91310143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	122	276	0	ENST00000355112.3:c.2197C>T	p.Pro733Ser	p.P733S	ENST00000355112	NM_000057.2	733	Cca/Tca																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39638005	39638005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	90	194	0	ENST00000262039.4:c.2422C>T	p.His808Tyr	p.H808Y	ENST00000262039	NM_002647.2	808	Cac/Tac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044523	47044523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	207	273	0	ENST00000329236.7:c.1786C>A	p.Gln596Lys	p.Q596K	ENST00000329236	NM_001204466.1	596	Cag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	85	78	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	302	155	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440372	52440372	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	226	227	0	ENST00000460680.1:c.680G>C	p.Arg227Pro	p.R227P	ENST00000460680	NM_004656.3	227	cGc/cCc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105745	27105745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	217	262	0	ENST00000324856.7:c.5356G>A	p.Glu1786Lys	p.E1786K	ENST00000324856	NM_006015.4	1786	Gag/Aag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651338	52651338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	263	408	0	ENST00000394830.3:c.1758G>A	p.Met586Ile	p.M586I	ENST00000394830	NM_018313.4	586	atG/atA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549884	187549884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	194	240	0	ENST00000441802.2:c.4357C>T	p.Arg1453Cys	p.R1453C	ENST00000441802	NM_005245.3	1453	Cgt/Tgt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26971348	26971348	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	154	297	0	ENST00000381527.3:c.919A>G	p.Lys307Glu	p.K307E	ENST00000381527	NM_001260.1	307	Aaa/Gaa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465606	99465606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	238	203	0	ENST00000268035.6:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000268035	NM_000875.3	811	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348815	89348815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	485	648	0	ENST00000301030.4:c.4135G>C	p.Asp1379His	p.D1379H	ENST00000301030	NM_001256183.1	1379	Gat/Cat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348926	89348926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	425	534	0	ENST00000301030.4:c.4024G>A	p.Glu1342Lys	p.E1342K	ENST00000301030	NM_001256183.1	1342	Gag/Aag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534347	63534347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	361	335	0	ENST00000307078.5:c.1174G>C	p.Glu392Gln	p.E392Q	ENST00000307078	NM_004655.3	392	Gag/Cag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143985	11143985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	274	262	0	ENST00000344626.4:c.3566G>A	p.Arg1189Gln	p.R1189Q	ENST00000344626	NM_003072.3	1189	cGa/cAa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484414	57484414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	303	310	0	ENST00000371085.3:c.595C>T	p.Arg199Cys	p.R199C	ENST00000371085	NM_000516.4	199	Cgc/Tgc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485737	57485737	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	275	274	0	ENST00000371085.3:c.1039-1G>A		p.X347_splice	ENST00000371085	NM_000516.4	347																																																																															
STAG2	10735	MSKCC	GRCh37	X	123196830	123196830	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	290	235	0	ENST00000218089.9:c.1717C>T	p.Gln573Ter	p.Q573*	ENST00000218089	NM_001042749.1	573	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	73	136	0				ENST00000310581	NM_198253.2																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	222	396	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	236	424	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	311	383	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178097304	178097304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	148	279	0	ENST00000397062.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000397062	NM_006164.4	137	tCg/tTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42795082	42795082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	321	478	0	ENST00000575354.2:c.2162C>G	p.Ser721Cys	p.S721C	ENST00000575354	NM_015125.3	721	tCc/tGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256093	16256093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	200	395	0	ENST00000375759.3:c.3358G>C	p.Asp1120His	p.D1120H	ENST00000375759	NM_015001.2	1120	Gat/Cat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256416	16256416	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	261	415	0	ENST00000375759.3:c.3681G>C	p.Lys1227Asn	p.K1227N	ENST00000375759	NM_015001.2	1227	aaG/aaC																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25459815	25459815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	294	417	0	ENST00000264709.3:c.2468G>A	p.Arg823Lys	p.R823K	ENST00000264709	NM_175629.2	823	aGg/aAg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146625	185146625	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	198	330	0	ENST00000265026.3:c.256C>T	p.Gln86Ter	p.Q86*	ENST00000265026	NM_004721.4	86	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112176306	112176306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	189	347	1	ENST00000257430.4:c.5015G>T	p.Gly1672Val	p.G1672V	ENST00000257430	NM_000038.5	1672	gGa/gTa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520724	176520724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	261	373	0	ENST00000292408.4:c.1467G>A	p.Met489Ile	p.M489I	ENST00000292408	NM_213647.1	489	atG/atA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437700	49437700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	362	662	0	ENST00000301067.7:c.5270G>C	p.Arg1757Pro	p.R1757P	ENST00000301067	NM_003482.3	1757	cGa/cCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437731	49437731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	294	562	0	ENST00000301067.7:c.5239G>A	p.Glu1747Lys	p.E1747K	ENST00000301067	NM_003482.3	1747	Gaa/Aaa																																																																														
BLM	641	MSKCC	GRCh37	15	91292688	91292688	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	182	364	0	ENST00000355112.3:c.190G>C	p.Asp64His	p.D64H	ENST00000355112	NM_000057.2	64	Gat/Cat																																																																														
BLM	641	MSKCC	GRCh37	15	91292785	91292785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	169	409	0	ENST00000355112.3:c.287G>T	p.Gly96Val	p.G96V	ENST00000355112	NM_000057.2	96	gGa/gTa																																																																														
BLM	641	MSKCC	GRCh37	15	91292800	91292800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	156	399	0	ENST00000355112.3:c.302G>C	p.Arg101Thr	p.R101T	ENST00000355112	NM_000057.2	101	aGa/aCa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368266	45368266	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	214	455	0	ENST00000262160.6:c.1336C>G	p.Leu446Val	p.L446V	ENST00000262160	NM_005901.5	446	Cta/Gta																																																																														
CIC	23152	MSKCC	GRCh37	19	42795260	42795260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	199	328	0	ENST00000575354.2:c.2340C>G	p.Phe780Leu	p.F780L	ENST00000575354	NM_015125.3	780	ttC/ttG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100915	41100915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	258	343	0	ENST00000373198.4:c.1441G>A	p.Glu481Lys	p.E481K	ENST00000373198	NM_133170.3	481	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0003331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	15	70	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	33	163	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	33	163	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CASP8	841	MSKCC	GRCh37	2	202137412	202137412	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	46	226	1	ENST00000358485.4:c.640G>T	p.Gly214Ter	p.G214*	ENST00000358485	NM_001080125.1	214	Gga/Tga																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403510	138403510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	43	372	0	ENST00000289153.2:c.2272C>A	p.Leu758Met	p.L758M	ENST00000289153	NM_006219.2	758	Ctg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	119	418	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687163	37687163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	46	272	0	ENST00000447079.4:c.4067G>A	p.Arg1356Gln	p.R1356Q	ENST00000447079	NM_015083.1	1356	cGa/cAa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918736	50918736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	26	293	0	ENST00000440232.2:c.2606C>T	p.Ser869Leu	p.S869L	ENST00000440232	NM_002691.3	869	tCg/tTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022440	31022440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	29	111	0	ENST00000375687.4:c.1925G>A	p.Gly642Glu	p.G642E	ENST00000375687	NM_015338.5	642	gGa/gAa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023357	31023357	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	47	206	0	ENST00000375687.4:c.2842G>T	p.Glu948Ter	p.E948*	ENST00000375687	NM_015338.5	948	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	29	90	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	50	181	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	49033844	49033844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	86	455	1	ENST00000267163.4:c.1981C>T	p.Arg661Trp	p.R661W	ENST00000267163	NM_000321.2	661	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	242	421	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	92	662	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670652	134670652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	95	529	0	ENST00000398015.3:c.563C>T	p.Ser188Phe	p.S188F	ENST00000398015	NM_004441.4	188	tCt/tTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55964866	55964866	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	60	336	1	ENST00000263923.4:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000263923	NM_002253.2	791	Cgg/Tgg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77043802	77043802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	84	555	0	ENST00000356341.3:c.1524G>C	p.Lys508Asn	p.K508N	ENST00000356341	NM_002576.4	508	aaG/aaC																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133959	41133959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	96	701	0	ENST00000379561.5:c.1669C>T	p.Gln557Ter	p.Q557*	ENST00000379561	NM_002015.3	557	Caa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828782	72828782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	99	774	0	ENST00000268489.5:c.7799C>G	p.Ser2600Ter	p.S2600*	ENST00000268489	NM_006885.3	2600	tCa/tGa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	76	433	0	ENST00000245479.2:c.791G>A	p.Arg264Lys	p.R264K	ENST00000245479	NM_000346.3	264	aGa/aAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42795601	42795601	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	78	441	0	ENST00000575354.2:c.2681C>G	p.Ser894Cys	p.S894C	ENST00000575354	NM_015125.3	894	tCc/tGc																																																																														
CIC	23152	MSKCC	GRCh37	19	42796616	42796616	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	60	233	0	ENST00000575354.2:c.3173C>G	p.Ser1058Ter	p.S1058*	ENST00000575354	NM_015125.3	1058	tCa/tGa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226052	53226052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	79	290	0	ENST00000375401.3:c.2797G>A	p.Glu933Lys	p.E933K	ENST00000375401	NM_004187.3	933	Gag/Aag																																																																														
AR	367	MSKCC	GRCh37	X	66765924	66765924	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	80	269	0	ENST00000374690.3:c.936C>G	p.Phe312Leu	p.F312L	ENST00000374690	NM_000044.3	312	ttC/ttG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	102	104	0				ENST00000310581	NM_198253.2																																																																																
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	167	217	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	441	270	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432459	49432459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	354	250	0	ENST00000301067.7:c.8680C>T	p.Pro2894Ser	p.P2894S	ENST00000301067	NM_003482.3	2894	Ccg/Tcg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36931998	36931998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	935	445	0	ENST00000361632.4:c.2471G>A	p.Gly824Glu	p.G824E	ENST00000361632		824	gGg/gAg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12653457	12653457	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	334	255	0	ENST00000251849.4:c.312A>C	p.Glu104Asp	p.E104D	ENST00000251849	NM_002880.3	104	gaA/gaC																																																																														
TP63	8626	MSKCC	GRCh37	3	189587175	189587175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	117	230	0	ENST00000264731.3:c.1192G>A	p.Asp398Asn	p.D398N	ENST00000264731	NM_003722.4	398	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971123	21971123	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	38	94	0	ENST00000304494.5:c.235A>G	p.Thr79Ala	p.T79A	ENST00000304494	NM_000077.4	79	Acc/Gcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971123	21971123	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	38	94	0	ENST00000304494.5:c.235A>G	p.Thr79Ala	p.T79A	ENST00000304494	NM_000077.4	79	Acc/Gcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971123	21971123	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	38	94	0	ENST00000304494.5:c.235A>G	p.Thr79Ala	p.T79A	ENST00000304494	NM_000077.4	79	Acc/Gcc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347168	347168	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	385	390	0	ENST00000262320.3:c.1843G>C	p.Ala615Pro	p.A615P	ENST00000262320	NM_003502.3	615	Gcc/Ccc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2100461	2100461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	294	276	0	ENST00000219476.3:c.199G>T	p.Val67Phe	p.V67F	ENST00000219476	NM_000548.3	67	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	196	137	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211101	2211101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	301	307	0	ENST00000398665.3:c.1355C>T	p.Ala452Val	p.A452V	ENST00000398665	NM_032482.2	452	gCc/gTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289974	15289974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	338	348	0	ENST00000263388.2:c.3580C>T	p.Pro1194Ser	p.P1194S	ENST00000263388	NM_000435.2	1194	Ccc/Tcc																																																																														
CIC	23152	MSKCC	GRCh37	19	42796310	42796310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	393	371	0	ENST00000575354.2:c.2959C>T	p.Pro987Ser	p.P987S	ENST00000575354	NM_015125.3	987	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730823	40730823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	247	244	0	ENST00000373198.4:c.3712C>T	p.Pro1238Ser	p.P1238S	ENST00000373198	NM_133170.3	1238	Ccc/Tcc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44833931	44833931	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	276	340	0	ENST00000377967.4:c.355T>C	p.Tyr119His	p.Y119H	ENST00000377967	NM_021140.2	119	Tac/Cac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971106	21971116	+	frameshift_variant	Frame_Shift_Del	DEL	GTCGTGCACGG	GTCGTGCACGG	-			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	36	97	0	ENST00000304494.5:c.242_252del	p.Pro81ArgfsTer35	p.P81Rfs*35	ENST00000304494	NM_000077.4	81	cCCGTGCACGAC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971106	21971116	+	frameshift_variant	Frame_Shift_Del	DEL	GTCGTGCACGG	GTCGTGCACGG	-			P-0003358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	36	97	0	ENST00000304494.5:c.242_252del	p.Pro81ArgfsTer35	p.P81Rfs*35	ENST00000304494	NM_000077.4	81	cCCGTGCACGAC/c																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	79	92	0				ENST00000310581	NM_198253.2																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	53	93	0	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	301	370	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
PARP1	142	MSKCC	GRCh37	1	226566970	226566970	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	266	346	0	ENST00000366794.5:c.1618G>C	p.Glu540Gln	p.E540Q	ENST00000366794	NM_001618.3	540	Gaa/Caa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976506	25976506	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	249	328	0	ENST00000435504.4:c.1039G>T	p.Glu347Ter	p.E347*	ENST00000435504		347	Gag/Tag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068384	26068384	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	229	366	2	ENST00000435504.4:c.106C>T	p.Gln36Ter	p.Q36*	ENST00000435504		36	Caa/Taa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098930	178098930	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	207	358	0	ENST00000397062.3:c.115T>G	p.Phe39Val	p.F39V	ENST00000397062	NM_006164.4	39	Ttc/Gtc																																																																														
BCL6	604	MSKCC	GRCh37	3	187447772	187447772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	177	185	0	ENST00000232014.4:c.421G>A	p.Glu141Lys	p.E141K	ENST00000232014	NM_001130845.1	141	Gaa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250867	153250867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	192	393	0	ENST00000281708.4:c.1193C>T	p.Ser398Phe	p.S398F	ENST00000281708	NM_033632.3	398	tCt/tTt																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032138	26032138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	327	458	0	ENST00000244661.2:c.151G>A	p.Glu51Lys	p.E51K	ENST00000244661	NM_003537.3	51	Gag/Aag																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793802	89793802	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	149	260	0	ENST00000336032.3:c.871A>G	p.Ser291Gly	p.S291G	ENST00000336032	NM_006813.2	291	Agt/Ggt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	227	306	0	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859516	151859516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	227	339	0	ENST00000262189.6:c.11146G>A	p.Glu3716Lys	p.E3716K	ENST00000262189	NM_170606.2	3716	Gaa/Aaa																																																																														
MYC	4609	MSKCC	GRCh37	8	128751118	128751118	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	260	406	0	ENST00000377970.2:c.655T>G	p.Ser219Ala	p.S219A	ENST00000377970	NM_002467.4	219	Tcg/Gcg																																																																														
SYK	6850	MSKCC	GRCh37	9	93606461	93606461	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	205	343	1	ENST00000375746.1:c.281A>G	p.Gln94Arg	p.Q94R	ENST00000375746	NM_001174167.1	94	cAg/cGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431936	49431936	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	263	392	0	ENST00000301067.7:c.9203A>G	p.Glu3068Gly	p.E3068G	ENST00000301067	NM_003482.3	3068	gAg/gGg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885541	111885541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	489	638	1	ENST00000341259.2:c.1318C>A	p.His440Asn	p.H440N	ENST00000341259	NM_005475.2	440	Cac/Aac																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114208	115114208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	340	452	0	ENST00000257566.3:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000257566	NM_016569.3	337	Gat/Aat																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075130	16075130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	152	212	0	ENST00000268712.3:c.422C>T	p.Ala141Val	p.A141V	ENST00000268712	NM_006311.3	141	gCa/gTa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860619	45860619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	336	439	0	ENST00000391945.4:c.1388C>A	p.Pro463Gln	p.P463Q	ENST00000391945	NM_000400.3	463	cCg/cAg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252865	36252865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	209	259	0	ENST00000300305.3:c.497G>A	p.Arg166Gln	p.R166Q	ENST00000300305		166	cGa/cAa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175874	24175874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	196	305	0	ENST00000263121.7:c.1102C>T	p.Gln368Ter	p.Q368*	ENST00000263121	NM_003073.3	368	Cag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76891528	76891528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	327	232	0	ENST00000373344.5:c.4577C>T	p.Ala1526Val	p.A1526V	ENST00000373344	NM_000489.3	1526	gCt/gTt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67569798	67569847	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCTCCAGCAACCTGGCAGAATTACGACAGCTTCTTGATTGTGGTGAGT	GAGCTCCAGCAACCTGGCAGAATTACGACAGCTTCTTGATTGTGGTGAGT	-			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	81	216	0	ENST00000274335.5:c.460_502+7del		p.X154_splice	ENST00000274335		154																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3831243	3831246	+	frameshift_variant	Frame_Shift_Del	DEL	AATC	AATC	-			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	159	301	0	ENST00000262367.5:c.1635_1638del	p.Leu545PhefsTer16	p.L545Ffs*16	ENST00000262367	NM_004380.2	545	ttGATT/tt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115972	8115973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	46	176	0	ENST00000346208.3:c.1320dup	p.Ala441ArgfsTer66	p.A441Rfs*66	ENST00000346208		440	acc/aCcc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499412	89499413	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0003362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	215	357	0	ENST00000336596.2:c.2582_2583delinsCT	p.Trp861Ser	p.W861S	ENST00000336596	NM_005233.5	861	tGG/tCT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	19	79	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	10	146	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	19	142	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982463	25982463	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	42	279	0	ENST00000435504.4:c.827C>G	p.Ser276Cys	p.S276C	ENST00000435504		276	tCc/tGc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462608	40462608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	45	399	0	ENST00000345506.4:c.2306G>A	p.Arg769His	p.R769H	ENST00000345506	NM_003152.3	769	cGc/cAc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41197781	41197781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	74	380	0	ENST00000357654.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000357654	NM_007294.3	1836	Gag/Aag																																																																														
MALT1	10892	MSKCC	GRCh37	18	56376666	56376666	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	74	526	0	ENST00000348428.3:c.706C>T	p.Gln236Ter	p.Q236*	ENST00000348428	NM_006785.3	236	Caa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108127026	108127029	+	frameshift_variant	Frame_Shift_Ins	INS	GAAG	GAAG	AAAAA			P-0003370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	53	273	0	ENST00000278616.4:c.2209_2212delinsAAAAA	p.Glu737LysfsTer6	p.E737Kfs*6	ENST00000278616	NM_000051.3	737	GAAGag/AAAAAag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	259	354	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	40	155	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	40	155	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	40	155	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	32	91	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0003373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	114	413	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455075	50455075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	60	338	0	ENST00000331340.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000331340	NM_006060.4	208	Cga/Tga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729636	41729636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	209	662	0	ENST00000242208.4:c.893G>A	p.Arg298Gln	p.R298Q	ENST00000242208	NM_002192.2	298	cGg/cAg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647224	23647224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	55	453	0	ENST00000261584.4:c.643G>C	p.Glu215Gln	p.E215Q	ENST00000261584	NM_024675.3	215	Gaa/Caa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246271	41246271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	112	476	0	ENST00000357654.3:c.1277C>T	p.Ser426Leu	p.S426L	ENST00000357654	NM_007294.3	426	tCa/tTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41565601	41565601	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	95	318	1	ENST00000263253.7:c.4267G>T	p.Glu1423Ter	p.E1423*	ENST00000263253	NM_001429.3	1423	Gaa/Taa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651926	36651926	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	56	221	0	ENST00000244741.5:c.49delG	p.Ala17ProfsTer14	p.A17Pfs*14	ENST00000244741	NM_000389.4	16	aaG/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	29	31	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	186	400	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681655	30681655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	172	286	0	ENST00000376406.3:c.442G>A	p.Glu148Lys	p.E148K	ENST00000376406	NM_014641.2	148	Gaa/Aaa																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176175855	176175855	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	12	31	0	ENST00000367669.3:c.260C>G	p.Ser87Cys	p.S87C	ENST00000367669	NM_022457.5	87	tCc/tGc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681483	30681483	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	158	386	0	ENST00000376406.3:c.529G>T	p.Glu177Ter	p.E177*	ENST00000376406	NM_014641.2	177	Gaa/Taa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001284	150001284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	68	366	0	ENST00000253339.5:c.2320G>C	p.Asp774His	p.D774H	ENST00000253339		774	Gat/Cat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341213	8341213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	113	278	0	ENST00000356435.5:c.5003G>A	p.Cys1668Tyr	p.C1668Y	ENST00000356435		1668	tGt/tAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343285	118343285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	57	224	0	ENST00000534358.1:c.1411C>G	p.Gln471Glu	p.Q471E	ENST00000534358	NM_005933.3	471	Caa/Gaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343655	118343655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	59	210	0	ENST00000534358.1:c.1781C>T	p.Ser594Leu	p.S594L	ENST00000534358	NM_005933.3	594	tCa/tTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18443932	18443932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	67	229	0	ENST00000266497.5:c.905A>G	p.His302Arg	p.H302R	ENST00000266497		302	cAt/cGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3794927	3794927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	80	351	0	ENST00000262367.5:c.3950G>A	p.Arg1317Lys	p.R1317K	ENST00000262367	NM_004380.2	1317	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	132	388	0	ENST00000269305.4:c.856G>C	p.Glu286Gln	p.E286Q	ENST00000269305	NM_001126112.2	286	Gaa/Caa																																																																														
NF1	4763	MSKCC	GRCh37	17	29554556	29554556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	48	247	0	ENST00000358273.4:c.2341C>A	p.His781Asn	p.H781N	ENST00000358273	NM_001042492.2	781	Cat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	91	386	0	ENST00000269305.4:c.592del	p.Glu198LysfsTer49	p.E198Kfs*49	ENST00000269305	NM_001126112.2	198	Gaa/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	10	66	0				ENST00000310581	NM_198253.2																																																																																
RAC1	5879	MSKCC	GRCh37	7	6431635	6431635	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	22	246	0	ENST00000356142.4:c.188A>T	p.Asp63Val	p.D63V	ENST00000356142	NM_018890.3	63	gAt/gTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	19	442	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480320	56480320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	29	360	0	ENST00000267101.3:c.427C>A	p.Leu143Met	p.L143M	ENST00000267101	NM_001982.3	143	Ctg/Atg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11288973	11288973	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	22	267	0	ENST00000361445.4:c.2782G>A	p.Asp928Asn	p.D928N	ENST00000361445	NM_004958.3	928	Gac/Aac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257698	16257698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	32	448	0	ENST00000375759.3:c.4963G>C	p.Glu1655Gln	p.E1655Q	ENST00000375759	NM_015001.2	1655	Gag/Cag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198264988	198264988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	35	427	0	ENST00000335508.6:c.2889G>C	p.Lys963Asn	p.K963N	ENST00000335508	NM_012433.2	963	aaG/aaC																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	40	416	0	ENST00000335508.6:c.2704G>C	p.Glu902Gln	p.E902Q	ENST00000335508	NM_012433.2	902	Gaa/Caa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125716	47125716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	39	517	0	ENST00000409792.3:c.5554C>T	p.His1852Tyr	p.H1852Y	ENST00000409792	NM_014159.6	1852	Cat/Tat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518840	187518840	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	27	439	0	ENST00000441802.2:c.12364G>C	p.Glu4122Gln	p.E4122Q	ENST00000441802	NM_005245.3	4122	Gaa/Caa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436602	49436602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	34	470	0	ENST00000301067.7:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000301067	NM_003482.3	1902	Gaa/Aaa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091123	29091123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	26	409	0	ENST00000328354.6:c.1367C>T	p.Ser456Leu	p.S456L	ENST00000328354	NM_007194.3	456	tCa/tTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045494	47045494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	37	257	0	ENST00000329236.7:c.2227C>T	p.Arg743Cys	p.R743C	ENST00000329236	NM_001204466.1	743	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101357	27101385	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCATGGCACACGCCAGCCCCCATATGG	TCCCATGGCACACGCCAGCCCCCATATGG	-			P-0003404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	28	477	0	ENST00000324856.7:c.4643_4671del	p.His1548LeufsTer14	p.H1548Lfs*14	ENST00000324856	NM_006015.4	1547	TCCCATGGCACACGCCAGCCCCCATATGGt/t																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			33	28	190	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	134	558	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258277	16258277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	102	590	0	ENST00000375759.3:c.5542G>A	p.Asp1848Asn	p.D1848N	ENST00000375759	NM_015001.2	1848	Gac/Aac																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652044	36652044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	176	434	0	ENST00000244741.5:c.166G>A	p.Glu56Lys	p.E56K	ENST00000244741	NM_000389.4	56	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29683508	29683508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	129	386	0	ENST00000358273.4:c.7646C>T	p.Ser2549Leu	p.S2549L	ENST00000358273	NM_001042492.2	2549	tCa/tTa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872823	37872823	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	133	522	0	ENST00000269571.5:c.1702C>G	p.Gln568Glu	p.Q568E	ENST00000269571		568	Cag/Gag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879604	37879604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	115	439	0	ENST00000269571.5:c.1979G>A	p.Gly660Asp	p.G660D	ENST00000269571		660	gGc/gAc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121076	29121076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	129	566	1	ENST00000328354.6:c.481G>C	p.Glu161Gln	p.E161Q	ENST00000328354	NM_007194.3	161	Gaa/Caa																																																																														
MED12	9968	MSKCC	GRCh37	X	70349924	70349924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	119	331	0	ENST00000374080.3:c.3907G>C	p.Asp1303His	p.D1303H	ENST00000374080		1303	Gac/Cac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	156	247	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	43	65	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	42	134	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	168	472	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041618	47041619	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0003651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	202	263	0	ENST00000329236.7:c.1610dup	p.Tyr537Ter	p.Y537*	ENST00000329236	NM_001204466.1	537	tat/tAat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	47	310	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	22	122	0				ENST00000310581	NM_198253.2																																																																																
NPM1	4869	MSKCC	GRCh37	5	170814993	170814993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	45	144	0	ENST00000296930.5:c.41C>T	p.Pro14Leu	p.P14L	ENST00000296930	NM_002520.6	14	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	57	89	0				ENST00000310581	NM_198253.2																																																																																
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	16	248	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154760	2154760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143785521		P-0003681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	228	301	0	ENST00000434045.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000434045	NM_001127598.1	154	cCg/cTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	43	86	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	110	168	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222163	53222163	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	70	165	0	ENST00000375401.3:c.4669C>T	p.Gln1557Ter	p.Q1557*	ENST00000375401	NM_004187.3	1557	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097687	27097687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	170	338	0	ENST00000324856.7:c.3276G>C	p.Leu1092Phe	p.L1092F	ENST00000324856	NM_006015.4	1092	ttG/ttC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845367	151845367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	135	265	0	ENST00000262189.6:c.13645C>A	p.Arg4549Ser	p.R4549S	ENST00000262189	NM_170606.2	4549	Cgc/Agc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807374	3807374	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	133	273	0	ENST00000262367.5:c.3613G>T	p.Glu1205Ter	p.E1205*	ENST00000262367	NM_004380.2	1205	Gag/Tag																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091821	29091821	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	99	182	2	ENST00000328354.6:c.1136C>G	p.Ser379Cys	p.S379C	ENST00000328354	NM_007194.3	379	tCt/tGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969371	44969372	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0003682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	164	402	0	ENST00000377967.4:c.4054_4055del	p.Lys1352AspfsTer36	p.K1352Dfs*36	ENST00000377967	NM_021140.2	1351	cgAAag/cgag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431662	49431662	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	111	315	0	ENST00000301067.7:c.9477del	p.Ser3159ArgfsTer2	p.S3159Rfs*2	ENST00000301067	NM_003482.3	3159	agC/ag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	54	90	0				ENST00000310581	NM_198253.2																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118375566	118375566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	213	313	0	ENST00000534358.1:c.8959A>G	p.Thr2987Ala	p.T2987A	ENST00000534358	NM_005933.3	2987	Act/Gct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	74	99	0				ENST00000310581	NM_198253.2																																																																																
MAPK1	5594	MSKCC	GRCh37	22	22160227	22160227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	70	357	0	ENST00000215832.6:c.404G>A	p.Arg135Lys	p.R135K	ENST00000215832	NM_002745.4	135	aGa/aAa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45873425	45873425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	188	388	0	ENST00000391945.4:c.71A>G	p.Tyr24Cys	p.Y24C	ENST00000391945	NM_000400.3	24	tAc/tGc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265540	198265540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	162	451	0	ENST00000335508.6:c.2617G>A	p.Glu873Lys	p.E873K	ENST00000335508	NM_012433.2	873	Gag/Aag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298001	11298001	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	213	451	0	ENST00000361445.4:c.2107C>G	p.Gln703Glu	p.Q703E	ENST00000361445	NM_004958.3	703	Cag/Gag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458525	120458525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	30	312	0	ENST00000256646.2:c.6820C>G	p.Pro2274Ala	p.P2274A	ENST00000256646	NM_024408.3	2274	Cca/Gca																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128051636	128051636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	55	313	0	ENST00000285398.2:c.22G>A	p.Asp8Asn	p.D8N	ENST00000285398	NM_000122.1	8	Gac/Aac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578331	212578331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	40	457	0	ENST00000342788.4:c.926C>G	p.Pro309Arg	p.P309R	ENST00000342788	NM_005235.2	309	cCt/cGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540924	187540924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	103	220	0	ENST00000441802.2:c.6816A>G	p.Ile2272Met	p.I2272M	ENST00000441802	NM_005245.3	2272	atA/atG																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670918	30670918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	132	427	0	ENST00000376406.3:c.5828G>C	p.Arg1943Pro	p.R1943P	ENST00000376406	NM_014641.2	1943	cGg/cCg																																																																														
CDK6	1021	MSKCC	GRCh37	7	92462487	92462487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	63	445	0	ENST00000265734.4:c.151G>A	p.Glu51Lys	p.E51K	ENST00000265734	NM_001259.6	51	Gag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545662	106545662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	76	421	0	ENST00000359195.3:c.3139G>A	p.Asp1047Asn	p.D1047N	ENST00000359195	NM_002649.2	1047	Gac/Aac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152027735	152027735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	97	602	0	ENST00000262189.6:c.340G>A	p.Glu114Lys	p.E114K	ENST00000262189	NM_170606.2	114	Gag/Aag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87549103	87549103	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	233	331	0	ENST00000277120.3:c.1660A>G	p.Ile554Val	p.I554V	ENST00000277120		554	Att/Gtt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060925	38060925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	45	222	0	ENST00000250448.2:c.1064C>T	p.Ser355Leu	p.S355L	ENST00000250448	NM_004496.3	355	tCa/tTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29576024	29576024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	54	368	0	ENST00000358273.4:c.3997G>A	p.Glu1333Lys	p.E1333K	ENST00000358273	NM_001042492.2	1333	Gag/Aag																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58734131	58734131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	83	717	0	ENST00000305921.3:c.1189G>A	p.Asp397Asn	p.D397N	ENST00000305921	NM_003620.3	397	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980923	40980923	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	17	199	0	ENST00000373198.4:c.1563C>G	p.Ile521Met	p.I521M	ENST00000373198	NM_133170.3	521	atC/atG																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20153875	20153875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	90	140	0	ENST00000379607.5:c.185G>A	p.Arg62Lys	p.R62K	ENST00000379607	NM_001412.3	62	aGa/aAa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913186	39913186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	30	202	0	ENST00000378444.4:c.4929G>T	p.Glu1643Asp	p.E1643D	ENST00000378444	NM_001123385.1	1643	gaG/gaT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412848	63412848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	21	242	0	ENST00000330258.3:c.319G>A	p.Glu107Lys	p.E107K	ENST00000330258	NM_152424.3	107	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0003792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	160	133	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	273	372	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
INSR	3643	MSKCC	GRCh37	19	7184342	7184342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138528064		P-0003792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	57	313	1	ENST00000302850.5:c.959C>T	p.Thr320Met	p.T320M	ENST00000302850	NM_000208.2	320	aCg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			22	18	61	0				ENST00000310581	NM_198253.2																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106508919	106508919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	37	105	0	ENST00000359195.3:c.913G>A	p.Val305Met	p.V305M	ENST00000359195	NM_002649.2	305	Gtg/Atg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335803	73335803	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	50	192	0	ENST00000377767.4:c.2492C>G	p.Ser831Ter	p.S831*	ENST00000377767	NM_014953.3	831	tCa/tGa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	819	343	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	67	89	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	284	391	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719306	190719306	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	165	285	0	ENST00000441310.2:c.1308T>A	p.Phe436Leu	p.F436L	ENST00000441310	NM_000534.4	436	ttT/ttA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158225	47158225	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	138	318	0	ENST00000409792.3:c.4474C>T	p.Arg1492Ter	p.R1492*	ENST00000409792	NM_014159.6	1492	Cga/Tga																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547225	106547225	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	208	223	2	ENST00000369096.4:c.462G>C	p.Glu154Asp	p.E154D	ENST00000369096	NM_001198.3	154	gaG/gaC																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455144	50455144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	184	218	0	ENST00000331340.3:c.691G>A	p.Gly231Ser	p.G231S	ENST00000331340	NM_006060.4	231	Ggc/Agc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	56	159	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	56	159	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	56	159	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250980	99250980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	134	360	0	ENST00000268035.6:c.284G>A	p.Ser95Asn	p.S95N	ENST00000268035	NM_000875.3	95	aGc/aAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29541520	29541520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	171	274	0	ENST00000358273.4:c.1444A>G	p.Thr482Ala	p.T482A	ENST00000358273	NM_001042492.2	482	Aca/Gca																																																																														
EP300	2033	MSKCC	GRCh37	22	41543906	41543906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	203	409	0	ENST00000263253.7:c.2197C>T	p.Leu733Phe	p.L733F	ENST00000263253	NM_001429.3	733	Ctt/Ttt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180036925	180036926	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	67	367	0	ENST00000261937.6:c.3786_3787del	p.Thr1263AspfsTer22	p.T1263Dfs*22	ENST00000261937	NM_182925.4	1262	ccAAcg/cccg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738247	145738247	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	39	278	0	ENST00000428558.2:c.2738del	p.Leu913TrpfsTer35	p.L913Wfs*35	ENST00000428558	NM_004260.3	913	tTg/tg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187712	11187712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	185	301	2	ENST00000361445.4:c.6185C>T	p.Pro2062Leu	p.P2062L	ENST00000361445	NM_004958.3	2062	cCc/cTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255772	16255772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	126	144	0	ENST00000375759.3:c.3037C>T	p.Arg1013Cys	p.R1013C	ENST00000375759	NM_015001.2	1013	Cgc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260038	16260038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	241	190	0	ENST00000375759.3:c.7303C>T	p.Pro2435Ser	p.P2435S	ENST00000375759	NM_015001.2	2435	Ccc/Tcc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932837	36932837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	473	327	0	ENST00000361632.4:c.2034G>A	p.Met678Ile	p.M678I	ENST00000361632		678	atG/atA																																																																														
MPL	4352	MSKCC	GRCh37	1	43805719	43805719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	272	254	0	ENST00000372470.3:c.775G>A	p.Glu259Lys	p.E259K	ENST00000372470	NM_005373.2	259	Gaa/Aaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843739	156843739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	420	325	0	ENST00000524377.1:c.1165G>A	p.Asp389Asn	p.D389N	ENST00000524377	NM_002529.3	389	Gac/Aac																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872696	136872696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	76	377	0	ENST00000241393.3:c.802G>A	p.Glu268Lys	p.E268K	ENST00000241393	NM_003467.2	268	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286826	212286826	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	132	196	0	ENST00000342788.4:c.2870G>A	p.Trp957Ter	p.W957*	ENST00000342788	NM_005235.2	957	tGg/tAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295674	212295674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	142	273	0	ENST00000342788.4:c.2639G>A	p.Gly880Glu	p.G880E	ENST00000342788	NM_005235.2	880	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543810	212543810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	145	216	0	ENST00000342788.4:c.1589G>A	p.Arg530Lys	p.R530K	ENST00000342788	NM_005235.2	530	aGg/aAg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12647784	12647784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	151	270	0	ENST00000251849.4:c.596C>T	p.Ser199Phe	p.S199F	ENST00000251849	NM_002880.3	199	tCc/tTc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713315	30713315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	279	187	0	ENST00000359013.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000359013	NM_001024847.2	239	Gag/Aag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067153	37067153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	209	148	0	ENST00000231790.2:c.1064C>T	p.Pro355Leu	p.P355L	ENST00000231790	NM_000249.3	355	cCc/cTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390982	89390982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	167	290	0	ENST00000336596.2:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000336596	NM_005233.5	350	Gac/Aac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480459	89480459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	299	216	0	ENST00000336596.2:c.2296G>A	p.Gly766Arg	p.G766R	ENST00000336596	NM_005233.5	766	Gga/Aga																																																																														
ATR	545	MSKCC	GRCh37	3	142272485	142272485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	333	326	0	ENST00000350721.4:c.2630G>A	p.Gly877Glu	p.G877E	ENST00000350721	NM_001184.3	877	gGa/gAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178943776	178943776	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	148	231	0	ENST00000263967.3:c.2443C>T	p.Gln815Ter	p.Q815*	ENST00000263967	NM_006218.2	815	Caa/Taa																																																																														
TP63	8626	MSKCC	GRCh37	3	189349307	189349307	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	113	189	0	ENST00000264731.3:c.3G>T	p.Met1?	p.M1?	ENST00000264731	NM_003722.4	1	atG/atT																																																																														
KDR	3791	MSKCC	GRCh37	4	55972086	55972086	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	870	204	0	ENST00000263923.4:c.1558C>T	p.Gln520Ter	p.Q520*	ENST00000263923	NM_002253.2	520	Caa/Taa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280071	66280071	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	314	251	0	ENST00000273854.3:c.1618A>G	p.Ile540Val	p.I540V	ENST00000273854	NM_004439.5	540	Att/Gtt																																																																														
TERT	7015	MSKCC	GRCh37	5	1264708	1264708	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	220	223	0	ENST00000310581.5:c.2655-1G>A		p.X885_splice	ENST00000310581	NM_198253.2	885																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	188	54	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295253	1295253	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	200	61	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38950622	38950622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	634	365	0	ENST00000357387.3:c.3328C>T	p.Arg1110Cys	p.R1110C	ENST00000357387	NM_152756.3	1110	Cgt/Tgt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177540	56177540	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	311	267	1	ENST00000399503.3:c.2513T>C	p.Leu838Ser	p.L838S	ENST00000399503	NM_005921.1	838	tTa/tCa																																																																														
APC	324	MSKCC	GRCh37	5	112175550	112175550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	254	219	0	ENST00000257430.4:c.4259C>T	p.Pro1420Leu	p.P1420L	ENST00000257430	NM_000038.5	1420	cCc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112176558	112176558	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	116	192	0	ENST00000257430.4:c.5267C>G	p.Ser1756Cys	p.S1756C	ENST00000257430	NM_000038.5	1756	tCt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112179155	112179155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	214	163	0	ENST00000257430.4:c.7864C>T	p.Pro2622Ser	p.P2622S	ENST00000257430	NM_000038.5	2622	Ccc/Tcc																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197211	26197212	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	347	493	0	ENST00000356476.2:c.267_268delinsAA	p.Val90Met	p.V90M	ENST00000356476		89	gcGGtg/gcAAtg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671501	30671501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	164	281	0	ENST00000376406.3:c.5459C>T	p.Ser1820Leu	p.S1820L	ENST00000376406	NM_014641.2	1820	tCa/tTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679714	30679714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	192	298	0	ENST00000376406.3:c.2005C>T	p.Pro669Ser	p.P669S	ENST00000376406	NM_014641.2	669	Ccc/Tcc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32171977	32171977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	117	153	0	ENST00000375023.3:c.3055G>A	p.Gly1019Ser	p.G1019S	ENST00000375023	NM_004557.3	1019	Ggc/Agc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967200	93967200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	195	337	0	ENST00000369303.4:c.2152G>A	p.Ala718Thr	p.A718T	ENST00000369303	NM_004440.3	718	Gcc/Acc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967960	93967960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	387	380	0	ENST00000369303.4:c.1967G>A	p.Gly656Glu	p.G656E	ENST00000369303	NM_004440.3	656	gGg/gAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94067995	94067995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	360	309	0	ENST00000369303.4:c.967C>T	p.Pro323Ser	p.P323S	ENST00000369303	NM_004440.3	323	Cca/Tca																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554856	106554856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	227	177	0	ENST00000369096.4:c.1973C>T	p.Pro658Leu	p.P658L	ENST00000369096	NM_001198.3	658	cCa/cTa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2969703	2969704	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	118	177	0	ENST00000396946.4:c.1575_1576delinsAA	p.Gly526Arg	p.G526R	ENST00000396946	NM_032415.4	525	aaGGgg/aaAAgg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729949	41729949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	405	349	0	ENST00000242208.4:c.580G>A	p.Glu194Lys	p.E194K	ENST00000242208	NM_002192.2	194	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268944	55268944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	119	262	0	ENST00000275493.2:c.3010G>A	p.Glu1004Lys	p.E1004K	ENST00000275493	NM_005228.3	1004	Gaa/Aaa																																																																														
SMO	6608	MSKCC	GRCh37	7	128848618	128848618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	145	235	0	ENST00000249373.3:c.1283C>T	p.Ser428Phe	p.S428F	ENST00000249373	NM_005631.4	428	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860908	151860908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	90	106	0	ENST00000262189.6:c.9754C>T	p.Arg3252Cys	p.R3252C	ENST00000262189	NM_170606.2	3252	Cgt/Tgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874644	151874644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1636	161	214	0	ENST00000262189.6:c.7894C>T	p.Gln2632Ter	p.Q2632*	ENST00000262189	NM_170606.2	2632	Caa/Taa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370867	55370867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	101	165	0	ENST00000297316.4:c.169G>A	p.Gly57Arg	p.G57R	ENST00000297316	NM_022454.3	57	Ggg/Agg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741839	145741839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	193	258	0	ENST00000428558.2:c.664C>T	p.Pro222Ser	p.P222S	ENST00000428558	NM_004260.3	222	Cct/Tct																																																																														
JAK2	3717	MSKCC	GRCh37	9	5044462	5044462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	366	324	0	ENST00000381652.3:c.410C>T	p.Ser137Phe	p.S137F	ENST00000381652	NM_004972.3	137	tCt/tTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484293	8484293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	304	268	0	ENST00000356435.5:c.3239C>T	p.Ser1080Leu	p.S1080L	ENST00000356435		1080	tCa/tTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	172	99	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	172	99	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396479	139396479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	148	298	0	ENST00000277541.6:c.5446G>A	p.Glu1816Lys	p.E1816K	ENST00000277541	NM_017617.3	1816	Gag/Aag																																																																														
RET	5979	MSKCC	GRCh37	10	43615107	43615107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	303	282	0	ENST00000355710.3:c.2521C>T	p.Pro841Ser	p.P841S	ENST00000355710	NM_020975.4	841	Ccg/Tcg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123246929	123246929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	308	255	0	ENST00000358487.5:c.1996C>T	p.Pro666Ser	p.P666S	ENST00000358487	NM_000141.4	666	Cca/Tca																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156615	2156615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	262	228	0	ENST00000434045.2:c.307G>A	p.Asp103Asn	p.D103N	ENST00000434045	NM_001127598.1	103	Gac/Aac																																																																														
PGR	5241	MSKCC	GRCh37	11	100912737	100912737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	203	354	0	ENST00000325455.5:c.2585G>A	p.Gly862Glu	p.G862E	ENST00000325455	NM_001202474.3	862	gGa/gAa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195542	102195542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	205	410	0	ENST00000263464.3:c.302C>T	p.Ser101Phe	p.S101F	ENST00000263464	NM_001165.4	101	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344594	118344594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	150	281	0	ENST00000534358.1:c.2720C>T	p.Pro907Leu	p.P907L	ENST00000534358	NM_005933.3	907	cCt/cTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	162	259	0	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245926	46245926	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	153	199	0	ENST00000334344.6:c.4020C>G	p.Asn1340Lys	p.N1340K	ENST00000334344	NM_152641.2	1340	aaC/aaG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443961	49443961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	107	170	0	ENST00000301067.7:c.3410C>T	p.Pro1137Leu	p.P1137L	ENST00000301067	NM_003482.3	1137	cCt/cTt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36989294	36989294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	111	194	1	ENST00000354822.5:c.41C>T	p.Ala14Val	p.A14V	ENST00000354822	NM_001079668.2	14	gCc/gTc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68352607	68352608	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	154	239	0	ENST00000487270.1:c.474_475delinsTT	p.Arg159Cys	p.R159C	ENST00000487270	NM_133509.3	158	tcCCgt/tcTTgt																																																																														
AKT1	207	MSKCC	GRCh37	14	105241439	105241439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	121	272	0	ENST00000349310.3:c.541C>T	p.Leu181Phe	p.L181F	ENST00000349310	NM_001014432.1	181	Ctc/Ttc																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022992	33022992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	144	346	0	ENST00000300177.4:c.101C>T	p.Pro34Leu	p.P34L	ENST00000300177	NM_001191322.1	34	cCc/cTc																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023091	33023091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	139	297	0	ENST00000300177.4:c.200C>T	p.Ala67Val	p.A67V	ENST00000300177	NM_001191322.1	67	gCc/gTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121831	2121832	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	77	149	0	ENST00000219476.3:c.1993_1994delinsTT	p.Pro665Phe	p.P665F	ENST00000219476	NM_000548.3	665	CCt/TTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819312	3819312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	103	159	2	ENST00000262367.5:c.2923C>T	p.Pro975Ser	p.P975S	ENST00000262367	NM_004380.2	975	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858390	9858390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	127	185	0	ENST00000330684.3:c.3011C>T	p.Ser1004Phe	p.S1004F	ENST00000330684	NM_001134407.1	1004	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858484	9858484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	156	248	1	ENST00000330684.3:c.2917G>A	p.Asp973Asn	p.D973N	ENST00000330684	NM_001134407.1	973	Gat/Aat																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216997	7216998	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	CA			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	485	355	0	ENST00000380728.2:c.523_524delinsTG	p.Pro175Ter	p.P175*	ENST00000380728		175	CCa/TGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	291	224	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16089934	16089934	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	14	215	0	ENST00000268712.3:c.176A>C	p.Gln59Pro	p.Q59P	ENST00000268712	NM_006311.3	59	cAa/cCa																																																																														
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	578	225	2	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58677926	58677926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	487	204	0	ENST00000305921.3:c.151C>T	p.Pro51Ser	p.P51S	ENST00000305921	NM_003620.3	51	Ccg/Tcg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615785	1615785	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201250905		P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	310	345	0	ENST00000344749.5:c.1486G>A	p.Glu496Lys	p.E496K	ENST00000344749	NM_001136139.2	496	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272140	15272140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	48	65	0	ENST00000263388.2:c.6299C>T	p.Ser2100Leu	p.S2100L	ENST00000263388	NM_000435.2	2100	tCg/tTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276618	15276618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	157	164	0	ENST00000263388.2:c.5647G>A	p.Asp1883Asn	p.D1883N	ENST00000263388	NM_000435.2	1883	Gat/Aat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276770	15276770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	129	192	0	ENST00000263388.2:c.5495G>A	p.Gly1832Glu	p.G1832E	ENST00000263388	NM_000435.2	1832	gGg/gAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289871	15289871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	95	177	0	ENST00000263388.2:c.3683G>T	p.Gly1228Val	p.G1228V	ENST00000263388	NM_000435.2	1228	gGa/gTa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354179	15354179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	70	47	0	ENST00000263377.2:c.2701C>T	p.Pro901Ser	p.P901S	ENST00000263377	NM_058243.2	901	Cca/Tca																																																																														
CIC	23152	MSKCC	GRCh37	19	42794515	42794515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	326	311	0	ENST00000575354.2:c.1595C>T	p.Pro532Leu	p.P532L	ENST00000575354	NM_015125.3	532	cCa/cTa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716352	52716352	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	241	186	0	ENST00000322088.6:c.796A>T	p.Lys266Ter	p.K266*	ENST00000322088	NM_014225.5	266	Aag/Tag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9543580	9543580	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	183	275	0	ENST00000353224.5:c.1574T>A	p.Phe525Tyr	p.F525Y	ENST00000353224	NM_177990.2	525	tTt/tAt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561520	9561520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	210	127	0	ENST00000353224.5:c.262G>A	p.Asp88Asn	p.D88N	ENST00000353224	NM_177990.2	88	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730877	40730877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	262	162	0	ENST00000373198.4:c.3658C>T	p.Arg1220Trp	p.R1220W	ENST00000373198	NM_133170.3	1220	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790114	40790114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	196	150	0	ENST00000373198.4:c.2617G>A	p.Asp873Asn	p.D873N	ENST00000373198	NM_133170.3	873	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980844	40980844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	131	214	0	ENST00000373198.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000373198	NM_133170.3	548	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419969	41419969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	315	246	0	ENST00000373198.4:c.352G>A	p.Gly118Arg	p.G118R	ENST00000373198	NM_133170.3	118	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420103	41420103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	71	120	0	ENST00000373198.4:c.218C>T	p.Ser73Phe	p.S73F	ENST00000373198	NM_133170.3	73	tCt/tTt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231836	36231836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	103	158	0	ENST00000300305.3:c.548C>T	p.Pro183Leu	p.P183L	ENST00000300305		183	cCa/cTa																																																																														
ERG	2078	MSKCC	GRCh37	21	39795371	39795371	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	127	264	0	ENST00000288319.7:c.349A>G	p.Asn117Asp	p.N117D	ENST00000288319	NM_182918.3	117	Aac/Gac																																																																														
EP300	2033	MSKCC	GRCh37	22	41545939	41545939	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	440	285	0	ENST00000263253.7:c.2554C>T	p.Gln852Ter	p.Q852*	ENST00000263253	NM_001429.3	852	Cag/Tag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1331449	1331449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	148	318	0	ENST00000381566.1:c.79G>A	p.Ala27Thr	p.A27T	ENST00000381566		27	Gca/Aca																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410331	63410331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	149	153	0	ENST00000330258.3:c.2836C>T	p.Leu946Phe	p.L946F	ENST00000330258	NM_152424.3	946	Ctt/Ttt																																																																														
AR	367	MSKCC	GRCh37	X	66765082	66765082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	125	166	1	ENST00000374690.3:c.94G>A	p.Glu32Lys	p.E32K	ENST00000374690	NM_000044.3	32	Gaa/Aaa																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649643	206649653	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGCCCGGGA	GCTGCCCGGGA	-			P-0003871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	103	134	0	ENST00000367120.3:c.482_492del	p.Ala161GlyfsTer2	p.A161Gfs*2	ENST00000367120	NM_014002.3	160	GCTGCCCGGGAg/g																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	325	473	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	110	170	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40864896	40864896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	175	562	0	ENST00000373198.4:c.2372G>A	p.Arg791Lys	p.R791K	ENST00000373198	NM_133170.3	791	aGa/aAa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896585	78896585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	168	496	0	ENST00000306801.3:c.2582C>T	p.Pro861Leu	p.P861L	ENST00000306801	NM_020761.2	861	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	191	303	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	191	303	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067192	37067192	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201673334		P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	163	507	0	ENST00000231790.2:c.1103C>T	p.Ser368Leu	p.S368L	ENST00000231790	NM_000249.3	368	tCg/tTg																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032098	26032098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	747	848	3	ENST00000244661.2:c.191G>A	p.Arg64Gln	p.R64Q	ENST00000244661	NM_003537.3	64	cGg/cAg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681619	30681619	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	374	559	1	ENST00000376406.3:c.478C>T	p.Gln160Ter	p.Q160*	ENST00000376406	NM_014641.2	160	Cag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180964	32180964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	141	400	0	ENST00000375023.3:c.2386G>A	p.Gly796Ser	p.G796S	ENST00000375023	NM_004557.3	796	Ggc/Agc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332141	70332141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	195	550	0	ENST00000373644.4:c.46G>A	p.Glu16Lys	p.E16K	ENST00000373644	NM_030625.2	16	Gaa/Aaa																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94219136	94219136	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	361	431	0	ENST00000323929.3:c.268C>T	p.Gln90Ter	p.Q90*	ENST00000323929	NM_005591.3	90	Cag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913257	32913257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	493	757	0	ENST00000380152.3:c.4765C>G	p.Pro1589Ala	p.P1589A	ENST00000380152		1589	Cca/Gca																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641355	23641355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	155	587	1	ENST00000261584.4:c.2120C>T	p.Pro707Leu	p.P707L	ENST00000261584	NM_024675.3	707	cCt/cTt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15935782	15935782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	137	381	0	ENST00000268712.3:c.7151C>T	p.Pro2384Leu	p.P2384L	ENST00000268712	NM_006311.3	2384	cCt/cTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11130318	11130318	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	293	565	0	ENST00000344626.4:c.2557T>C	p.Phe853Leu	p.F853L	ENST00000344626	NM_003072.3	853	Ttc/Ctc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30312978	30312978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	275	583	0	ENST00000262643.3:c.781G>A	p.Asp261Asn	p.D261N	ENST00000262643	NM_001238.2	261	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743912	40743912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	281	422	0	ENST00000373198.4:c.3083G>A	p.Gly1028Glu	p.G1028E	ENST00000373198	NM_133170.3	1028	gGa/gAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225979	53225979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	90	621	0	ENST00000375401.3:c.2870G>C	p.Gly957Ala	p.G957A	ENST00000375401	NM_004187.3	957	gGt/gCt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860076	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	310	601	0	ENST00000228682.2:c.815_816delinsAA	p.Trp272Ter	p.W272*	ENST00000228682	NM_005269.2	272	tGG/tAA																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68301904	68301905	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	122	393	0	ENST00000487270.1:c.306_307delinsTT	p.Leu103Phe	p.L103F	ENST00000487270	NM_133509.3	102	tcCCtc/tcTTtc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	36	133	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	55	99	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	107	148	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	107	148	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	107	148	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	416	422	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
CDC73	79577	MSKCC	GRCh37	1	193107258	193107258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	49	183	0	ENST00000367435.3:c.467G>A	p.Arg156His	p.R156H	ENST00000367435	NM_024529.4	156	cGt/cAt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651292	52651292	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	173	271	0	ENST00000394830.3:c.1804G>T	p.Glu602Ter	p.E602*	ENST00000394830	NM_018313.4	602	Gag/Tag																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94194197	94194197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	102	313	0	ENST00000323929.3:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000323929	NM_005591.3	411	Gag/Aag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696713	47696713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	128	259	0	ENST00000347630.2:c.235G>A	p.Glu79Lys	p.E79K	ENST00000347630	NM_001007230.1	79	Gaa/Aaa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561457	9561457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	116	187	0	ENST00000353224.5:c.325G>C	p.Asp109His	p.D109H	ENST00000353224	NM_177990.2	109	Gat/Cat																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907684	111907687	+	frameshift_variant	Frame_Shift_Del	DEL	GGCG	GGCG	-			P-0003889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	141	241	0	ENST00000393256.3:c.458_461del	p.Arg153LeufsTer16	p.R153Lfs*16	ENST00000393256	NM_006538.4	153	cGGCGt/ct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	31	93	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	124	252	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518072	69518073	+	missense_variant	Missense_Mutation	DNP	AC	AC	GA			P-0003928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	92	327	0	ENST00000294312.3:c.292_293delinsTC	p.Val98Ser	p.V98S	ENST00000294312	NM_005117.2	98	GTg/TCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	48	165	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578523	7578523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	134	239	0	ENST00000269305.4:c.407A>C	p.Gln136Pro	p.Q136P	ENST00000269305	NM_001126112.2	136	cAa/cCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			827	131	487	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	148	192	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	148	192	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	148	192	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	723	366	0	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662151	227662151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	339	360	0	ENST00000305123.5:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000305123	NM_005544.2	435	cCc/cTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199342	16199342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			723	264	433	0	ENST00000375759.3:c.115C>T	p.Pro39Ser	p.P39S	ENST00000375759	NM_015001.2	39	Ccc/Tcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089494	27089494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	155	430	0	ENST00000324856.7:c.2450C>T	p.Ala817Val	p.A817V	ENST00000324856	NM_006015.4	817	gCc/gTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52663032	52663032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	405	342	0	ENST00000394830.3:c.1321G>A	p.Glu441Lys	p.E441K	ENST00000394830	NM_018313.4	441	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508905	106508905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	129	198	0	ENST00000359195.3:c.899G>A	p.Gly300Glu	p.G300E	ENST00000359195	NM_002649.2	300	gGa/gAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523609	106523609	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	124	187	0	ENST00000359195.3:c.2760+1G>A		p.X920_splice	ENST00000359195	NM_002649.2	920																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38282044	38282044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			874	298	486	0	ENST00000425967.3:c.1012T>C	p.Tyr338His	p.Y338H	ENST00000425967	NM_001174067.1	338	Tat/Cat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139410160	139410160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	110	178	0	ENST00000277541.6:c.1678G>A	p.Gly560Arg	p.G560R	ENST00000277541	NM_017617.3	560	Ggg/Agg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77054969	77054969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			799	531	428	0	ENST00000356341.3:c.893T>A	p.Ile298Asn	p.I298N	ENST00000356341	NM_002576.4	298	aTt/aAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437700	49437700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1026	177	609	0	ENST00000301067.7:c.5270G>A	p.Arg1757Gln	p.R1757Q	ENST00000301067	NM_003482.3	1757	cGa/cAa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	360056	360056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			751	213	545	0	ENST00000262320.3:c.1033C>T	p.Pro345Ser	p.P345S	ENST00000262320	NM_003502.3	345	Cca/Tca																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647605	23647605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			771	219	445	0	ENST00000261584.4:c.262C>T	p.Leu88Phe	p.L88F	ENST00000261584	NM_024675.3	88	Ctt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577608	7577608	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	41	206	0	ENST00000269305.4:c.673G>A	p.Val225Ile	p.V225I	ENST00000269305	NM_001126112.2	225	Gtt/Att																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021472	31021472	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			639	283	349	0	ENST00000375687.4:c.1471C>T	p.Gln491Ter	p.Q491*	ENST00000375687	NM_015338.5	491	Cag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76944333	76944333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	340	350	0	ENST00000373344.5:c.572C>T	p.Ser191Leu	p.S191L	ENST00000373344	NM_000489.3	191	tCa/tTa																																																																														
MPL	4352	MSKCC	GRCh37	1	43804297	43804298	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	225	401	0	ENST00000372470.3:c.297_298delinsAA	p.Glu100Lys	p.E100K	ENST00000372470	NM_005373.2	99	gaGGaa/gaAAaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189607201	189607202	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	447	387	0	ENST00000264731.3:c.1580_1581delinsTT	p.Pro527Leu	p.P527L	ENST00000264731	NM_003722.4	527	cCC/cTT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962280	2962281	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			889	202	399	0	ENST00000396946.4:c.2256_2257delinsAA	p.Val753Ile	p.V753I	ENST00000396946	NM_032415.4	752	aaGGtc/aaAAtc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436145	110436146	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	227	443	0	ENST00000375856.3:c.2255_2256delinsTT	p.Ser752Phe	p.S752F	ENST00000375856	NM_003749.2	752	tCC/tTT																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570046	95570047	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			803	223	438	0	ENST00000343455.3:c.3686_3687delinsTT	p.Pro1229Leu	p.P1229L	ENST00000343455	NM_177438.2	1229	cCC/cTT																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022534	12022535	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			812	116	494	0	ENST00000396373.4:c.640_641delinsTT	p.Pro214Leu	p.P214L	ENST00000396373	NM_001987.4	214	CCg/TTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508280	106508281	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	125	93	0	ENST00000359195.3:c.274_275delinsAA	p.Gly92Lys	p.G92K	ENST00000359195	NM_002649.2	92	GGa/AAa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561060	9561061	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	195	273	0	ENST00000353224.5:c.721_722delinsAA	p.Gly241Lys	p.G241K	ENST00000353224	NM_177990.2	241	GGg/AAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	28	214	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37879604	37879604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	65	308	0	ENST00000269571.5:c.1979G>A	p.Gly660Asp	p.G660D	ENST00000269571		660	gGc/gAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55240710	55240710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	87	559	0	ENST00000275493.2:c.1954G>A	p.Gly652Arg	p.G652R	ENST00000275493	NM_005228.3	652	Ggg/Agg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59793312	59793312	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			996	153	476	0	ENST00000259008.2:c.2492G>A	p.Arg831Lys	p.R831K	ENST00000259008	NM_032043.2	831	aGa/aAa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372104	45372104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1039	167	486	0	ENST00000262160.6:c.1065C>G	p.Ile355Met	p.I355M	ENST00000262160	NM_005901.5	355	atC/atG																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969327	44969327	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	213	266	0	ENST00000377967.4:c.4009G>T	p.Glu1337Ter	p.E1337*	ENST00000377967	NM_021140.2	1337	Gag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030637	47030641	+	intron_variant	Intron	DEL	CAGGC	CAGGC	-			P-0003955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	59	224	0	ENST00000329236.7:c.201+1740_201+1744delCAGGC		p.*67*	ENST00000329236	NM_001204466.1																																																																																
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	102	224	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0003970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	41	79	0				ENST00000310581	NM_198253.2																																																																																
AXIN1	8312	MSKCC	GRCh37	16	341287	341289	+	stop_gained	Nonsense_Mutation	ONP	CCT	CCT	ACC			P-0003970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	65	301	0	ENST00000262320.3:c.2195_2197delinsGGT	p.Gln732_Glu733delinsArgTer	p.Q732_E733delinsR*	ENST00000262320	NM_003502.3	732	cAGGag/cGGTag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	17	145	0				ENST00000310581	NM_198253.2																																																																																
CBL	867	MSKCC	GRCh37	11	119170283	119170283	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs144191570		P-0003990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	64	332	0	ENST00000264033.4:c.2513G>T	p.Gly838Val	p.G838V	ENST00000264033	NM_005188.3	838	gGc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	79	400	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	36	445	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175706	112175706	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	49	323	0	ENST00000257430.4:c.4415del	p.Val1472GlufsTer35	p.V1472Efs*35	ENST00000257430	NM_000038.5	1472	gTa/ga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0004008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	15	194	0				ENST00000310581	NM_198253.2																																																																																
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11552761		P-0004008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	75	726	0	ENST00000418115.1:c.50G>C	p.Gly17Ala	p.G17A	ENST00000418115	NM_001664.2	17	gGa/gCa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787716	135787716	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0004008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	107	666	0	ENST00000298552.3:c.866C>G	p.Ser289Ter	p.S289*	ENST00000298552	NM_001162426.1	289	tCa/tGa																																																																														
ATM	472	MSKCC	GRCh37	11	108192044	108192044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	100	567	0	ENST00000278616.4:c.6469G>C	p.Glu2157Gln	p.E2157Q	ENST00000278616	NM_000051.3	2157	Gag/Cag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138552	11138552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	142	684	2	ENST00000344626.4:c.3308G>A	p.Cys1103Tyr	p.C1103Y	ENST00000344626	NM_003072.3	1103	tGc/tAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923027	44923027	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004008-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	167	295	0	ENST00000377967.4:c.1888G>T	p.Glu630Ter	p.E630*	ENST00000377967	NM_021140.2	630	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004012-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	25	204	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41268802	41268802	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004012-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			966	139	546	0	ENST00000349496.5:c.1040T>C	p.Leu347Pro	p.L347P	ENST00000349496	NM_001904.3	347	cTa/cCa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0004048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	217	240	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0004048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	32	108	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	51	60	0				ENST00000310581	NM_198253.2																																																																																
LATS1	9113	MSKCC	GRCh37	6	150004922	150004922	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	176	377	0	ENST00000253339.5:c.1303C>T	p.Gln435Ter	p.Q435*	ENST00000253339		435	Cag/Tag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468265	120468265	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	93	119	0	ENST00000256646.2:c.4174C>T	p.Gln1392Ter	p.Q1392*	ENST00000256646	NM_024408.3	1392	Cag/Tag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807518	1807518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	196	266	0	ENST00000260795.2:c.1687C>G	p.Leu563Val	p.L563V	ENST00000260795		563	Ctg/Gtg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651883	36651883	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	308	190	0	ENST00000244741.5:c.5C>G	p.Ser2Ter	p.S2*	ENST00000244741	NM_000389.4	2	tCa/tGa																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441986	6441986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	304	195	0	ENST00000356142.4:c.545G>A	p.Arg182Gln	p.R182Q	ENST00000356142	NM_018890.3	182	cGa/cAa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729970	41729970	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	354	523	1	ENST00000242208.4:c.559G>C	p.Asp187His	p.D187H	ENST00000242208	NM_002192.2	187	Gac/Cac																																																																														
WT1	7490	MSKCC	GRCh37	11	32456475	32456475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	57	98	0	ENST00000332351.3:c.417C>A	p.Phe139Leu	p.F139L	ENST00000332351	NM_024426.4	139	ttC/ttA																																																																														
PAK1	5058	MSKCC	GRCh37	11	77103400	77103400	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	244	478	0	ENST00000356341.3:c.166C>T	p.Arg56Ter	p.R56*	ENST00000356341	NM_002576.4	56	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907447	32907447	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	284	349	0	ENST00000380152.3:c.1832C>G	p.Ser611Ter	p.S611*	ENST00000380152		611	tCa/tGa																																																																														
INSR	3643	MSKCC	GRCh37	19	7122892	7122892	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	202	352	0	ENST00000302850.5:c.3367G>A	p.Glu1123Lys	p.E1123K	ENST00000302850	NM_000208.2	1123	Gag/Aag																																																																														
CIC	23152	MSKCC	GRCh37	19	42794857	42794857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	125	189	0	ENST00000575354.2:c.1937G>C	p.Arg646Thr	p.R646T	ENST00000575354	NM_015125.3	646	aGa/aCa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57480495	57480495	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	163	186	0	ENST00000371085.3:c.490G>T	p.Glu164Ter	p.E164*	ENST00000371085	NM_000516.4	164	Gaa/Taa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175882	24175882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	150	212	0	ENST00000263121.7:c.1110G>T	p.Arg370Ser	p.R370S	ENST00000263121	NM_003073.3	370	agG/agT																																																																														
NF2	4771	MSKCC	GRCh37	22	30067931	30067965	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCACTGGTGATTTCTGAGGGGCTGGGGTTCCAGG	AGCACTGGTGATTTCTGAGGGGCTGGGGTTCCAGG	-			P-0004056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	137	260	0	ENST00000338641.4:c.1118_1122+30del		p.X373_splice	ENST00000338641	NM_000268.3	373																																																																															
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	413	238	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	2731	326	0	ENST00000269571.5:c.829G>C	p.Asp277His	p.D277H	ENST00000269571		277	Gac/Cac																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645687	12645687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	163	296	0	ENST00000251849.4:c.782C>G	p.Pro261Arg	p.P261R	ENST00000251849	NM_002880.3	261	cCt/cGt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782398	9782398	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	138	184	0	ENST00000377346.4:c.2331C>G	p.Ile777Met	p.I777M	ENST00000377346	NM_005026.3	777	atC/atG																																																																														
STK40	83931	MSKCC	GRCh37	1	36809557	36809557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	66	275	0	ENST00000373129.3:c.908C>T	p.Thr303Ile	p.T303I	ENST00000373129	NM_032017.1	303	aCc/aTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32945178	32945178	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	50	357	0	ENST00000380152.3:c.8573A>G	p.Gln2858Arg	p.Q2858R	ENST00000380152		2858	cAa/cGa																																																																														
NF1	4763	MSKCC	GRCh37	17	29490269	29490269	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	146	397	0	ENST00000358273.4:c.354C>A	p.Cys118Ter	p.C118*	ENST00000358273	NM_001042492.2	118	tgC/tgA																																																																														
RB1	5925	MSKCC	GRCh37	13	48934162	48934163	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	71	216	0	ENST00000267163.4:c.618dup	p.Gln207ThrfsTer5	p.Q207Tfs*5	ENST00000267163	NM_000321.2	206	tta/ttAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295167	1295168	+	upstream_gene_variant	5'Flank	INS	TC	TC	AATG			P-0004064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			9	71	32	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971173	21971173	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	38	84	0	ENST00000304494.5:c.185T>C	p.Leu62Pro	p.L62P	ENST00000304494	NM_000077.4	62	cTg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971173	21971173	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	38	84	0	ENST00000304494.5:c.185T>C	p.Leu62Pro	p.L62P	ENST00000304494	NM_000077.4	62	cTg/cCg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732318	74732318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1358	241	831	0	ENST00000359995.5:c.591G>C	p.Lys197Asn	p.K197N	ENST00000359995	NM_001195427.1	197	aaG/aaC																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128036886	128036886	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	157	422	1	ENST00000285398.2:c.1593C>G	p.Ile531Met	p.I531M	ENST00000285398	NM_000122.1	531	atC/atG																																																																														
CASP8	841	MSKCC	GRCh37	2	202149568	202149568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	166	288	0	ENST00000358485.4:c.1009C>T	p.His337Tyr	p.H337Y	ENST00000358485	NM_001080125.1	337	Cat/Tat																																																																														
CASP8	841	MSKCC	GRCh37	2	202150021	202150021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	81	163	1	ENST00000358485.4:c.1462C>A	p.Leu488Met	p.L488M	ENST00000358485	NM_001080125.1	488	Ctg/Atg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212522478	212522478	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	82	230	0	ENST00000342788.4:c.1946+1G>T		p.X649_splice	ENST00000342788	NM_005235.2	649																																																																															
INHA	3623	MSKCC	GRCh37	2	220439989	220439989	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1438	94	743	1	ENST00000243786.2:c.842T>C	p.Val281Ala	p.V281A	ENST00000243786	NM_002191.3	281	gTg/gCg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225370756	225370756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	64	219	0	ENST00000264414.4:c.1123G>C	p.Glu375Gln	p.E375Q	ENST00000264414	NM_003590.4	375	Gag/Cag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391067	89391067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	98	326	1	ENST00000336596.2:c.1133C>A	p.Pro378Gln	p.P378Q	ENST00000336596	NM_005233.5	378	cCa/cAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391078	89391078	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	142	337	0	ENST00000336596.2:c.1144T>A	p.Phe382Ile	p.F382I	ENST00000336596	NM_005233.5	382	Ttc/Atc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499449	89499449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	48	289	0	ENST00000336596.2:c.2619G>T	p.Gln873His	p.Q873H	ENST00000336596	NM_005233.5	873	caG/caT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637265	176637265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	61	213	0	ENST00000439151.2:c.1865G>C	p.Cys622Ser	p.C622S	ENST00000439151	NM_022455.4	622	tGc/tCc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710911	117710911	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	51	199	0	ENST00000368508.3:c.1361C>G	p.Thr454Arg	p.T454R	ENST00000368508	NM_002944.2	454	aCg/aGg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878235	151878235	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	122	207	1	ENST00000262189.6:c.6710C>G	p.Ser2237Ter	p.S2237*	ENST00000262189	NM_170606.2	2237	tCa/tGa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371732	55371732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	72	205	0	ENST00000297316.4:c.422G>T	p.Arg141Leu	p.R141L	ENST00000297316	NM_022454.3	141	cGg/cTg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740421	145740421	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	41	152	0	ENST00000428558.2:c.1519G>T	p.Gly507Cys	p.G507C	ENST00000428558	NM_004260.3	507	Ggc/Tgc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054734	5054734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	109	263	2	ENST00000381652.3:c.786G>T	p.Gln262His	p.Q262H	ENST00000381652	NM_004972.3	262	caG/caT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521513	8521513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	38	212	0	ENST00000356435.5:c.725C>A	p.Pro242His	p.P242H	ENST00000356435		242	cCc/cAc																																																																														
RET	5979	MSKCC	GRCh37	10	43607562	43607562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	48	177	0	ENST00000355710.3:c.1538C>A	p.Ala513Glu	p.A513E	ENST00000355710	NM_020975.4	513	gCg/gAg																																																																														
RET	5979	MSKCC	GRCh37	10	43615128	43615128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	152	468	0	ENST00000355710.3:c.2542A>G	p.Met848Val	p.M848V	ENST00000355710	NM_020975.4	848	Atg/Gtg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114901057	114901057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	192	731	0	ENST00000543371.1:c.667G>T	p.Asp223Tyr	p.D223Y	ENST00000543371	NM_001198531.1	223	Gac/Tac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448329	49448329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	215	437	0	ENST00000301067.7:c.382C>T	p.His128Tyr	p.H128Y	ENST00000301067	NM_003482.3	128	Cac/Tac																																																																														
MDM2	4193	MSKCC	GRCh37	12	69229702	69229702	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	29	181	0	ENST00000462284.1:c.778C>G	p.Leu260Val	p.L260V	ENST00000462284	NM_002392.5	260	Ctc/Gtc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112277	115112277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	60	69	0	ENST00000257566.3:c.1463C>G	p.Ala488Gly	p.A488G	ENST00000257566	NM_016569.3	488	gCg/gGg																																																																														
MGA	23269	MSKCC	GRCh37	15	42005460	42005460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1215	207	801	0	ENST00000219905.7:c.3196C>T	p.Arg1066Cys	p.R1066C	ENST00000219905	NM_001164273.1	1066	Cgc/Tgc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630687	90630687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	62	314	0	ENST00000330062.3:c.799C>G	p.Gln267Glu	p.Q267E	ENST00000330062	NM_002168.2	267	Cag/Gag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273994	10273994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	79	389	0	ENST00000330684.3:c.275G>T	p.Gly92Val	p.G92V	ENST00000330684	NM_001134407.1	92	gGg/gTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984742	72984742	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	89	693	0	ENST00000268489.5:c.2842G>T	p.Ala948Ser	p.A948S	ENST00000268489	NM_006885.3	948	Gcc/Tcc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17129588	17129588	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	219	350	0	ENST00000285071.4:c.298A>T	p.Lys100Ter	p.K100*	ENST00000285071	NM_144997.5	100	Aaa/Taa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440752	56440752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	109	319	1	ENST00000407977.2:c.466G>T	p.Gly156Trp	p.G156W	ENST00000407977		156	Ggg/Tgg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372040	45372040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	126	184	0	ENST00000262160.6:c.1129C>T	p.Pro377Ser	p.P377S	ENST00000262160	NM_005901.5	377	Cca/Tca																																																																														
INSR	3643	MSKCC	GRCh37	19	7184585	7184585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	33	116	0	ENST00000302850.5:c.716G>T	p.Cys239Phe	p.C239F	ENST00000302850	NM_000208.2	239	tGc/tTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123671	11123671	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	211	275	0	ENST00000344626.4:c.2321A>T	p.Asn774Ile	p.N774I	ENST00000344626	NM_003072.3	774	aAc/aTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905546	50905546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144979965		P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	191	725	0	ENST00000440232.2:c.674G>A	p.Arg225His	p.R225H	ENST00000440232	NM_002691.3	225	cGt/cAt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905999	50905999	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	72	455	0	ENST00000440232.2:c.970+1G>T		p.X324_splice	ENST00000440232	NM_002691.3	324																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52728969	52728969	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	47	255	0	ENST00000322088.6:c.1662-1G>T		p.X554_splice	ENST00000322088	NM_014225.5	554																																																																															
ERG	2078	MSKCC	GRCh37	21	39817420	39817420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	120	266	0	ENST00000288319.7:c.143G>T	p.Ser48Ile	p.S48I	ENST00000288319	NM_182918.3	48	aGc/aTc																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288212	21288212	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1722	165	418	1	ENST00000354336.3:c.457A>G	p.Ile153Val	p.I153V	ENST00000354336	NM_005207.3	153	Ata/Gta																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24143223	24143223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	284	426	0	ENST00000263121.7:c.455A>G	p.Asn152Ser	p.N152S	ENST00000263121	NM_003073.3	152	aAc/aGc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314981	1314981	+	downstream_gene_variant	3'Flank	SNP	G	G	C			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	117	302	0				ENST00000381566																																																																																	
RBM10	8241	MSKCC	GRCh37	X	47044922	47044922	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	87	163	0	ENST00000329236.7:c.2014G>T	p.Glu672Ter	p.E672*	ENST00000329236	NM_001204466.1	672	Gag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70351459	70351459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	40	216	0	ENST00000374080.3:c.4107G>C	p.Gln1369His	p.Q1369H	ENST00000374080		1369	caG/caC																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747067	40747067	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	102	287	0	ENST00000373198.4:c.3015del	p.Thr1006GlnfsTer9	p.T1006Qfs*9	ENST00000373198	NM_133170.3	1005	gtC/gt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288917	212288917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	59	238	0	ENST00000342788.4:c.2829del	p.Ile944SerfsTer15	p.I944Sfs*15	ENST00000342788	NM_005235.2	943	ccC/cc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001410	29001410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	75	148	0	ENST00000282397.4:c.1322del	p.Pro441ArgfsTer12	p.P441Rfs*12	ENST00000282397	NM_002019.4	441	cCg/cg																																																																														
MET	4233	MSKCC	GRCh37	7	116339968	116339969	+	missense_variant	Missense_Mutation	DNP	GA	GA	CT			P-0004114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	44	300	0	ENST00000397752.3:c.830_831delinsCT	p.Arg277Thr	p.R277T	ENST00000397752	NM_000245.2	277	aGA/aCT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	42	99	0				ENST00000310581	NM_198253.2																																																																																
VHL	7428	MSKCC	GRCh37	3	10188214	10188214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	155	221	0	ENST00000256474.2:c.357C>A	p.Phe119Leu	p.F119L	ENST00000256474	NM_000551.3	119	ttC/ttA																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367867	15367867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	149	174	0	ENST00000263377.2:c.1459G>A	p.Asp487Asn	p.D487N	ENST00000263377	NM_058243.2	487	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	33	108	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	146	157	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
EP300	2033	MSKCC	GRCh37	22	41565523	41565523	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	74	299	1	ENST00000263253.7:c.4189T>C	p.Tyr1397His	p.Y1397H	ENST00000263253	NM_001429.3	1397	Tac/Cac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	34	93	0				ENST00000310581	NM_198253.2																																																																																
CEBPA	1050	MSKCC	GRCh37	19	33792447	33792447	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	118	458	0	ENST00000498907.2:c.874A>C	p.Asn292His	p.N292H	ENST00000498907	NM_004364.3	292	Aac/Cac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223610	53223610	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	72	311	0	ENST00000375401.3:c.3749C>A	p.Ser1250Ter	p.S1250*	ENST00000375401	NM_004187.3	1250	tCa/tAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	141	49	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	151	106	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	270	89	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	270	89	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	473	249	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483868	88483868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	444	215	1	ENST00000360948.2:c.1702C>T	p.Leu568Phe	p.L568F	ENST00000360948	NM_001012338.2	568	Ctt/Ttt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223371	2223371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	617	355	0	ENST00000398665.3:c.3482A>G	p.Asp1161Gly	p.D1161G	ENST00000398665	NM_032482.2	1161	gAc/gGc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652036	36652037	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGTCACCGAGAC			P-0004257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	360	243	0	ENST00000244741.5:c.159_170dup	p.Val54_Thr57dup	p.V54_T57dup	ENST00000244741	NM_000389.4	54	ttt/ttTGTCACCGAGACt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373157	118373157	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	624	324	0	ENST00000534358.1:c.6551del	p.Pro2184LeufsTer29	p.P2184Lfs*29	ENST00000534358	NM_005933.3	2184	Cct/ct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929443	44929449	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGTGG	ACAGTGG	-			P-0004257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	678	389	0	ENST00000377967.4:c.2543_2549del	p.His848ArgfsTer17	p.H848Rfs*17	ENST00000377967	NM_021140.2	848	cACAGTGGg/cg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182152	99182152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	45	280	0	ENST00000074304.5:c.2217G>C	p.Leu739Phe	p.L739F	ENST00000074304	NM_001134224.1	739	ttG/ttC																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755620	57755620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	88	212	1	ENST00000274289.3:c.167C>T	p.Pro56Leu	p.P56L	ENST00000274289	NM_006622.3	56	cCt/cTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	27	51	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	27	51	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	27	51	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420164	49420164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	60	273	0	ENST00000301067.7:c.15585G>C	p.Gln5195His	p.Q5195H	ENST00000301067	NM_003482.3	5195	caG/caC																																																																														
EP300	2033	MSKCC	GRCh37	22	41523581	41523581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	116	263	0	ENST00000263253.7:c.997G>C	p.Glu333Gln	p.E333Q	ENST00000263253	NM_001429.3	333	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574023	7574023	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	159	337	0	ENST00000269305.4:c.1004delG	p.Arg335LeufsTer10	p.R335Lfs*10	ENST00000269305	NM_001126112.2	335	cGt/ct																																																																														
STK11	6794	MSKCC	GRCh37	19	1220377	1220378	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0004286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	93	208	0	ENST00000326873.7:c.470_471delinsAT	p.Phe157Tyr	p.F157Y	ENST00000326873	NM_000455.4	157	tTC/tAT																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165761	118165761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	31	348	0	ENST00000369448.3:c.271C>A	p.Leu91Met	p.L91M	ENST00000369448	NM_017709.3	91	Ctg/Atg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225343000	225343000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	104	750	0	ENST00000264414.4:c.2092G>A	p.Asp698Asn	p.D698N	ENST00000264414	NM_003590.4	698	Gac/Aac																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	45	393	1	ENST00000359013.4:c.449A>G	p.Glu150Gly	p.E150G	ENST00000359013	NM_001024847.2	150	gAa/gGa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164828	47164828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	73	419	0	ENST00000409792.3:c.1298G>A	p.Arg433His	p.R433H	ENST00000409792	NM_014159.6	433	cGc/cAc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651369	52651369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	103	640	0	ENST00000394830.3:c.1727G>A	p.Arg576His	p.R576H	ENST00000394830	NM_018313.4	576	cGc/cAc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204848	128204848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	91	594	0	ENST00000341105.2:c.593C>T	p.Ala198Val	p.A198V	ENST00000341105	NM_032638.4	198	gCg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	94	725	1	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921446	178921446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	65	599	0	ENST00000263967.3:c.928C>T	p.Arg310Cys	p.R310C	ENST00000263967	NM_006218.2	310	Cgc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	45	248	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1805516	1805516	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	114	570	0	ENST00000260795.2:c.1028A>T	p.Asn343Ile	p.N343I	ENST00000260795		343	aAt/aTt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807288	1807288	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	79	467	0	ENST00000260795.2:c.1537G>A	p.Asp513Asn	p.D513N	ENST00000260795		513	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112179084	112179084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	74	384	0	ENST00000257430.4:c.7793C>T	p.Thr2598Ile	p.T2598I	ENST00000257430	NM_000038.5	2598	aCc/aTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638491	176638491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	102	511	0	ENST00000439151.2:c.3091C>T	p.Arg1031Ter	p.R1031*	ENST00000439151	NM_022455.4	1031	Cga/Tga																																																																														
IRF4	3662	MSKCC	GRCh37	6	395910	395910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	69	484	0	ENST00000380956.4:c.467C>T	p.Thr156Met	p.T156M	ENST00000380956	NM_001195286.1	156	aCg/aTg																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748552	43748552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	85	624	1	ENST00000523873.1:c.506C>T	p.Ala169Val	p.A169V	ENST00000523873		169	gCc/gTc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152420091	152420091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	52	296	0	ENST00000206249.3:c.1778C>T	p.Ala593Val	p.A593V	ENST00000206249	NM_000125.3	593	gCc/gTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527695	157527695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	62	382	0	ENST00000346085.5:c.5420G>T	p.Gly1807Val	p.G1807V	ENST00000346085	NM_020732.3	1807	gGg/gTg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148543650	148543650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	71	461	0	ENST00000320356.2:c.158C>T	p.Thr53Met	p.T53M	ENST00000320356	NM_004456.4	53	aCg/aTg																																																																														
SYK	6850	MSKCC	GRCh37	9	93657821	93657821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	79	431	0	ENST00000375746.1:c.1847G>T	p.Arg616Met	p.R616M	ENST00000375746	NM_001174167.1	616	aGg/aTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133730335	133730335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	74	412	1	ENST00000318560.5:c.401G>A	p.Arg134His	p.R134H	ENST00000318560	NM_005157.4	134	cGc/cAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391404	139391404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	73	358	0	ENST00000277541.6:c.6787C>T	p.Arg2263Trp	p.R2263W	ENST00000277541	NM_017617.3	2263	Cgg/Tgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396253	139396253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	96	505	0	ENST00000277541.6:c.5585C>T	p.Pro1862Leu	p.P1862L	ENST00000277541	NM_017617.3	1862	cCg/cTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404312	139404312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	89	517	0	ENST00000277541.6:c.2842G>A	p.Glu948Lys	p.E948K	ENST00000277541	NM_017617.3	948	Gag/Aag																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139794922	139794922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	127	701	1	ENST00000247668.2:c.316G>A	p.Val106Ile	p.V106I	ENST00000247668	NM_021138.3	106	Gtc/Atc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279681	123279681	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	44	187	0	ENST00000358487.5:c.751C>T	p.Arg251Ter	p.R251*	ENST00000358487	NM_000141.4	251	Cga/Tga																																																																														
LMO1	4004	MSKCC	GRCh37	11	8252028	8252028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	58	401	0	ENST00000335790.3:c.49C>T	p.Pro17Ser	p.P17S	ENST00000335790	NM_002315.2	17	Ccc/Tcc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138825	64138825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	82	412	2	ENST00000334205.4:c.2192G>A	p.Arg731Gln	p.R731Q	ENST00000334205	NM_003942.2	731	cGg/cAg																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944913	31944913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	49	320	0	ENST00000340398.3:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000340398	NM_001013699.2	63	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420688	49420688	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	68	330	1	ENST00000301067.7:c.15061C>T	p.Arg5021Ter	p.R5021*	ENST00000301067	NM_003482.3	5021	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436599	49436599	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	96	528	0	ENST00000301067.7:c.5707C>T	p.Arg1903Ter	p.R1903*	ENST00000301067	NM_003482.3	1903	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49441822	49441822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	108	503	1	ENST00000301067.7:c.4162C>T	p.Arg1388Trp	p.R1388W	ENST00000301067	NM_003482.3	1388	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	123	604	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56494908	56494908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	82	396	0	ENST00000267101.3:c.3265C>T	p.Arg1089Trp	p.R1089W	ENST00000267101	NM_001982.3	1089	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495034	56495034	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150312718		P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	91	451	0	ENST00000267101.3:c.3391G>A	p.Ala1131Thr	p.A1131T	ENST00000267101	NM_001982.3	1131	Gcc/Acc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924336	112924336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	99	455	0	ENST00000351677.2:c.1282G>A	p.Val428Met	p.V428M	ENST00000351677	NM_002834.3	428	Gtg/Atg																																																																														
POLE	5426	MSKCC	GRCh37	12	133214706	133214706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	68	374	0	ENST00000320574.5:c.5572C>T	p.Arg1858Cys	p.R1858C	ENST00000320574	NM_006231.2	1858	Cgc/Tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133237718	133237718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	83	536	0	ENST00000320574.5:c.2897C>T	p.Ala966Val	p.A966V	ENST00000320574	NM_006231.2	966	gCt/gTt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563294	21563294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	78	515	0	ENST00000382592.4:c.625C>T	p.Arg209Trp	p.R209W	ENST00000382592	NM_014572.2	209	Cgg/Tgg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134142	41134142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144907712		P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	101	669	0	ENST00000379561.5:c.1486G>A	p.Val496Ile	p.V496I	ENST00000379561	NM_002015.3	496	Gtc/Atc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437493	110437493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	43	325	0	ENST00000375856.3:c.908G>A	p.Arg303His	p.R303H	ENST00000375856	NM_003749.2	303	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438250	110438250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	15	57	0	ENST00000375856.3:c.151C>T	p.Arg51Cys	p.R51C	ENST00000375856	NM_003749.2	51	Cgc/Tgc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609940	81609940	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142814218		P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	66	385	1	ENST00000298171.2:c.1538C>T	p.Thr513Met	p.T513M	ENST00000298171	NM_000369.2	513	aCg/aTg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2221594	2221594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	111	501	3	ENST00000326181.6:c.463G>A	p.Ala155Thr	p.A155T	ENST00000326181	NM_032271.2	155	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3790455	3790455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	100	518	0	ENST00000262367.5:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000262367	NM_004380.2	1360	Cga/Tga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843495	3843495	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	107	502	0	ENST00000262367.5:c.1108C>T	p.Arg370Ter	p.R370*	ENST00000262367	NM_004380.2	370	Cga/Tga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662303	67662303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	74	475	0	ENST00000264010.4:c.1549C>A	p.His517Asn	p.H517N	ENST00000264010	NM_006565.3	517	Cac/Aac																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663349	67663349	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	91	446	0	ENST00000264010.4:c.1750G>T	p.Glu584Ter	p.E584*	ENST00000264010	NM_006565.3	584	Gag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993996	72993996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	102	641	0	ENST00000268489.5:c.49G>A	p.Gly17Ser	p.G17S	ENST00000268489	NM_006885.3	17	Ggt/Agt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346507	89346507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	99	680	0	ENST00000301030.4:c.6443C>A	p.Ala2148Asp	p.A2148D	ENST00000301030	NM_001256183.1	2148	gCc/gAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346820	89346820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	60	440	0	ENST00000301030.4:c.6130G>A	p.Val2044Ile	p.V2044I	ENST00000301030	NM_001256183.1	2044	Gtc/Atc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351994	89351994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	115	775	1	ENST00000301030.4:c.956C>T	p.Thr319Met	p.T319M	ENST00000301030	NM_001256183.1	319	aCg/aTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805074	89805074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74977201		P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	80	411	2	ENST00000389301.3:c.4303G>A	p.Ala1435Thr	p.A1435T	ENST00000389301	NM_000135.2	1435	Gcc/Acc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7978988	7978988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199545653		P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	100	554	0	ENST00000319144.4:c.1579G>A	p.Val527Met	p.V527M	ENST00000319144	NM_001139.2	527	Gtg/Atg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17120493	17120493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	50	379	0	ENST00000285071.4:c.1066C>A	p.Leu356Met	p.L356M	ENST00000285071	NM_144997.5	356	Ctg/Atg																																																																														
RARA	5914	MSKCC	GRCh37	17	38487510	38487510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	70	462	0	ENST00000254066.5:c.40G>A	p.Gly14Arg	p.G14R	ENST00000254066	NM_000964.3	14	Ggg/Agg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533844	63533844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	65	418	0	ENST00000307078.5:c.1310C>T	p.Thr437Met	p.T437M	ENST00000307078	NM_004655.3	437	aCg/aTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276250	15276250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	110	538	2	ENST00000263388.2:c.5744G>A	p.Arg1915His	p.R1915H	ENST00000263388	NM_000435.2	1915	cGc/cAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281232	15281232	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	88	479	0	ENST00000263388.2:c.5024G>A	p.Trp1675Ter	p.W1675*	ENST00000263388	NM_000435.2	1675	tGg/tAg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18272814	18272814	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	137	532	0	ENST00000222254.8:c.854A>G	p.Glu285Gly	p.E285G	ENST00000222254	NM_005027.3	285	gAg/gGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944593	40944593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	60	290	0	ENST00000373198.4:c.1909C>T	p.Arg637Trp	p.R637W	ENST00000373198	NM_133170.3	637	Cgg/Tgg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121018	29121018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	109	681	2	ENST00000328354.6:c.539G>A	p.Arg180His	p.R180H	ENST00000328354	NM_007194.3	180	cGc/cAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410102	63410102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	92	291	0	ENST00000330258.3:c.3065G>A	p.Arg1022His	p.R1022H	ENST00000330258	NM_152424.3	1022	cGt/cAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76874315	76874315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	89	356	0	ENST00000373344.5:c.5407C>T	p.Arg1803Cys	p.R1803C	ENST00000373344	NM_000489.3	1803	Cgt/Tgt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197044	123197044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	67	315	0	ENST00000218089.9:c.1810C>T	p.Arg604Ter	p.R604*	ENST00000218089	NM_001042749.1	604	Cga/Tga																																																																														
KIT	3815	MSKCC	GRCh37	4	55595549	55595550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	50	514	0	ENST00000288135.5:c.2045dup	p.Leu682PhefsTer6	p.L682Ffs*6	ENST00000288135	NM_000222.2	680	aat/aaTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	49	123	0				ENST00000310581	NM_198253.2																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50467675	50467675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759124417		P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	100	281	0	ENST00000331340.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000331340	NM_006060.4	304	Gaa/Aaa																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166421	118166421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	82	308	0	ENST00000369448.3:c.931C>T	p.Arg311Cys	p.R311C	ENST00000369448	NM_017709.3	311	Cgc/Tgc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120484375	120484375	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	55	208	0	ENST00000256646.2:c.2755C>T	p.Pro919Ser	p.P919S	ENST00000256646	NM_024408.3	919	Cct/Tct																																																																														
AKT3	10000	MSKCC	GRCh37	1	243668576	243668576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	80	249	0	ENST00000263826.5:c.1415C>T	p.Ser472Phe	p.S472F	ENST00000263826	NM_005465.4	472	tCc/tTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356251	66356251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	63	250	0	ENST00000273854.3:c.1246C>T	p.Pro416Ser	p.P416S	ENST00000273854	NM_004439.5	416	Ccc/Tcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534467	187534467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	67	211	0	ENST00000441802.2:c.9259C>T	p.Arg3087Cys	p.R3087C	ENST00000441802	NM_005245.3	3087	Cgt/Tgt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638974	176638974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	80	272	0	ENST00000439151.2:c.3574C>T	p.Pro1192Ser	p.P1192S	ENST00000439151	NM_022455.4	1192	Cct/Tct																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288278	33288278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	123	311	0	ENST00000374542.5:c.1130C>T	p.Ser377Phe	p.S377F	ENST00000374542	NM_001141970.1	377	tCc/tTc																																																																														
FYN	2534	MSKCC	GRCh37	6	111983093	111983093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	71	424	0	ENST00000368678.4:c.1454C>T	p.Pro485Leu	p.P485L	ENST00000368678		485	cCg/cTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81386535	81386535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	60	342	0	ENST00000222390.5:c.452C>T	p.Pro151Leu	p.P151L	ENST00000222390	NM_000601.4	151	cCc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	207	235	0	ENST00000288602.6:c.1790T>A	p.Leu597Gln	p.L597Q	ENST00000288602	NM_004333.4	597	cTa/cAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140494149	140494149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	208	373	0	ENST00000288602.6:c.1099C>T	p.Pro367Ser	p.P367S	ENST00000288602	NM_004333.4	367	Ccc/Tcc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229649	98229649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	66	221	0	ENST00000331920.6:c.2309G>A	p.Arg770Gln	p.R770Q	ENST00000331920	NM_000264.3	770	cGa/cAa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325105	123325105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	64	374	0	ENST00000358487.5:c.223G>A	p.Asp75Asn	p.D75N	ENST00000358487	NM_000141.4	75	Gat/Aat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118359419	118359419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	102	266	0	ENST00000534358.1:c.4423T>C	p.Cys1475Arg	p.C1475R	ENST00000534358	NM_005933.3	1475	Tgt/Cgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793483	18793483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	67	338	0	ENST00000266497.5:c.4180G>A	p.Glu1394Lys	p.E1394K	ENST00000266497		1394	Gaa/Aaa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632749	23632749	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	59	296	0	ENST00000261584.4:c.3047T>A	p.Phe1016Tyr	p.F1016Y	ENST00000261584	NM_024675.3	1016	tTt/tAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351379	89351379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	123	531	0	ENST00000301030.4:c.1571C>T	p.Ser524Leu	p.S524L	ENST00000301030	NM_001256183.1	524	tCg/tTg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118607	17118607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	115	264	0	ENST00000285071.4:c.1324C>T	p.His442Tyr	p.H442Y	ENST00000285071	NM_144997.5	442	Cac/Tac																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226673	2226673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	88	212	0	ENST00000398665.3:c.4153C>T	p.Arg1385Cys	p.R1385C	ENST00000398665	NM_032482.2	1385	Cgc/Tgc																																																																														
INSR	3643	MSKCC	GRCh37	19	7267673	7267673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	81	174	0	ENST00000302850.5:c.335C>T	p.Ser112Leu	p.S112L	ENST00000302850	NM_000208.2	112	tCa/tTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47004909	47004909	+	intron_variant	Intron	SNP	G	G	A			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	104	275	0	ENST00000329236.7:c.-126+25G>A		p.*42*	ENST00000329236	NM_001204466.1																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266093	41266096	+	frameshift_variant	Frame_Shift_Del	DEL	CCTG	CCTG	-			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	76	292	0	ENST00000349496.5:c.90_93del	p.Tyr30Ter	p.Y30*	ENST00000349496	NM_001904.3	30	taCCTG/ta																																																																														
BRAF	673	MSKCC	GRCh37	7	140453131	140453132	+	missense_variant	Missense_Mutation	DNP	AT	AT	TA			P-0004348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	192	258	0	ENST00000288602.6:c.1803_1804delinsTA	p.Lys601_Ser602delinsAsnThr	p.K601_S602delinsNT	ENST00000288602	NM_004333.4	601	aaATct/aaTAct																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023076	150023076	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs187759014		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	192	652	0	ENST00000253339.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000253339		63	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	125	524	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920469	134920469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	224	560	1	ENST00000398015.3:c.2284G>A	p.Asp762Asn	p.D762N	ENST00000398015	NM_004441.4	762	Gac/Aac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170136	32170136	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	229	485	0	ENST00000375023.3:c.3472C>T	p.Arg1158Ter	p.R1158*	ENST00000375023	NM_004557.3	1158	Cga/Tga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2120487	2120487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	503	590	1	ENST00000219476.3:c.1747G>A	p.Ala583Thr	p.A583T	ENST00000219476	NM_000548.3	583	Gcc/Acc																																																																														
MED12	9968	MSKCC	GRCh37	X	70342421	70342421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	238	489	0	ENST00000374080.3:c.1312C>T	p.Arg438Cys	p.R438C	ENST00000374080		438	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231539	5231539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	163	415	0	ENST00000357368.4:c.1937C>T	p.Thr646Met	p.T646M	ENST00000357368	NM_002850.3	646	aCg/aTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	65	187	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41566507	41566507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	265	622	2	ENST00000263253.7:c.4384C>T	p.Arg1462Ter	p.R1462*	ENST00000263253	NM_001429.3	1462	Cga/Tga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193119485	193119485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	203	525	0	ENST00000367435.3:c.880G>A	p.Asp294Asn	p.D294N	ENST00000367435	NM_024529.4	294	Gat/Aat																																																																														
CBL	867	MSKCC	GRCh37	11	119149251	119149251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	261	671	0	ENST00000264033.4:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000264033	NM_005188.3	420	cGa/cAa																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	242	508	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	226	469	1	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845243	151845243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	207	418	0	ENST00000262189.6:c.13769G>A	p.Arg4590His	p.R4590H	ENST00000262189	NM_170606.2	4590	cGc/cAc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500303	99500303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61740868		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	216	473	0	ENST00000268035.6:c.3736C>T	p.Arg1246Cys	p.R1246C	ENST00000268035	NM_000875.3	1246	Cgc/Tgc																																																																														
NF1	4763	MSKCC	GRCh37	17	29490382	29490382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	185	474	0	ENST00000358273.4:c.467G>A	p.Arg156His	p.R156H	ENST00000358273	NM_001042492.2	156	cGc/cAc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	143	505	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137522064	137522064	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	344	370	0	ENST00000367739.4:c.815A>C	p.Lys272Thr	p.K272T	ENST00000367739	NM_000416.2	272	aAa/aCa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	149	397	0	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	187	500	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037474	12037474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	200	449	0	ENST00000396373.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000396373	NM_001987.4	369	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	144	535	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200387	138200387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	152	305	0	ENST00000237289.4:c.1805C>T	p.Thr602Met	p.T602M	ENST00000237289	NM_001270507.1	602	aCg/aTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128845086	128845086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	243	583	0	ENST00000249373.3:c.580G>A	p.Glu194Lys	p.E194K	ENST00000249373	NM_005631.4	194	Gaa/Aaa																																																																														
CDK4	1019	MSKCC	GRCh37	12	58142372	58142372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	219	467	0	ENST00000257904.6:c.848G>A	p.Arg283Gln	p.R283Q	ENST00000257904	NM_000075.3	283	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	213	419	1	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573563	48573564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	129	419	1	ENST00000342988.3:c.153dupA	p.Asp52ArgfsTer2	p.D52Rfs*2	ENST00000342988	NM_005359.5	49	-/A																																																																														
GNAS	2778	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	193	399	2	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119631622	119631622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	109	597	0	ENST00000316626.5:c.644C>T	p.Ser215Leu	p.S215L	ENST00000316626		215	tCg/tTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149512376	149512376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	188	431	2	ENST00000261799.4:c.1064G>A	p.Arg355His	p.R355H	ENST00000261799	NM_002609.3	355	cGc/cAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554008	63554008	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199798353		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	291	604	0	ENST00000307078.5:c.731C>T	p.Ser244Leu	p.S244L	ENST00000307078	NM_004655.3	244	tCg/tTg																																																																														
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	237	438	0	ENST00000558401.1:c.1A>T	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Ttg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060694	38060694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	251	687	3	ENST00000250448.2:c.1295C>T	p.Thr432Met	p.T432M	ENST00000250448	NM_004496.3	432	aCg/aTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15935782	15935782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	205	438	0	ENST00000268712.3:c.7151C>T	p.Pro2384Leu	p.P2384L	ENST00000268712	NM_006311.3	2384	cCt/cTt																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2491363	2491363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	171	462	0	ENST00000355716.4:c.406G>A	p.Ala136Thr	p.A136T	ENST00000355716	NM_003820.2	136	Gcc/Acc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782144	9782144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	186	455	1	ENST00000377346.4:c.2167G>A	p.Ala723Thr	p.A723T	ENST00000377346	NM_005026.3	723	Gcc/Acc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298671	11298671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	151	369	0	ENST00000361445.4:c.1790A>G	p.His597Arg	p.H597R	ENST00000361445	NM_004958.3	597	cAc/cGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237761	16237761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	164	461	0	ENST00000375759.3:c.1208G>A	p.Gly403Asp	p.G403D	ENST00000375759	NM_015001.2	403	gGc/gAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254594	16254594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	198	690	0	ENST00000375759.3:c.1859G>A	p.Arg620Gln	p.R620Q	ENST00000375759	NM_015001.2	620	cGa/cAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256105	16256105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	249	561	0	ENST00000375759.3:c.3370C>T	p.Pro1124Ser	p.P1124S	ENST00000375759	NM_015001.2	1124	Cca/Tca																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257116	16257116	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	197	553	0	ENST00000375759.3:c.4381A>C	p.Asn1461His	p.N1461H	ENST00000375759	NM_015001.2	1461	Aat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27093043	27093043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	206	529	0	ENST00000324856.7:c.2974G>T	p.Glu992Ter	p.E992*	ENST00000324856	NM_006015.4	992	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27102139	27102139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	279	529	1	ENST00000324856.7:c.5065G>T	p.Asp1689Tyr	p.D1689Y	ENST00000324856	NM_006015.4	1689	Gat/Tat																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36934852	36934852	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	261	618	0	ENST00000361632.4:c.1481T>C	p.Ile494Thr	p.I494T	ENST00000361632		494	aTc/aCc																																																																														
MPL	4352	MSKCC	GRCh37	1	43817921	43817921	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	268	585	0	ENST00000372470.3:c.1600G>T	p.Asp534Tyr	p.D534Y	ENST00000372470	NM_005373.2	534	Gac/Tac																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46724361	46724361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	270	668	0	ENST00000371975.4:c.214G>T	p.Ala72Ser	p.A72S	ENST00000371975	NM_003579.3	72	Gca/Tca																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46733226	46733226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	261	682	0	ENST00000371975.4:c.987G>T	p.Gln329His	p.Q329H	ENST00000371975	NM_003579.3	329	caG/caT																																																																														
JAK1	3716	MSKCC	GRCh37	1	65305346	65305346	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	290	696	0	ENST00000342505.4:c.2782A>T	p.Ile928Phe	p.I928F	ENST00000342505	NM_002227.2	928	Atc/Ttc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307158	65307158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	219	555	1	ENST00000342505.4:c.2530G>T	p.Asp844Tyr	p.D844Y	ENST00000342505	NM_002227.2	844	Gac/Tac																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332628	65332628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	221	642	0	ENST00000342505.4:c.911C>T	p.Ser304Leu	p.S304L	ENST00000342505	NM_002227.2	304	tCg/tTg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748011	72748011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151324323		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	289	778	0	ENST00000357731.5:c.167C>T	p.Ala56Val	p.A56V	ENST00000357731	NM_173808.2	56	gCg/gTg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748038	72748038	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	285	770	0	ENST00000357731.5:c.140A>G	p.Asn47Ser	p.N47S	ENST00000357731	NM_173808.2	47	aAc/aGc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	148	577	0	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120467936	120467936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	260	576	1	ENST00000256646.2:c.4503G>T	p.Lys1501Asn	p.K1501N	ENST00000256646	NM_024408.3	1501	aaG/aaT																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846217	156846217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	216	483	0	ENST00000524377.1:c.1658C>A	p.Ala553Asp	p.A553D	ENST00000524377	NM_002529.3	553	gCt/gAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162735830	162735830	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	229	627	0	ENST00000367921.3:c.1139C>A	p.Ser380Tyr	p.S380Y	ENST00000367921	NM_006182.2	380	tCt/tAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162743362	162743362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	170	460	0	ENST00000367921.3:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000367921	NM_006182.2	611	cGa/cAa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162743387	162743387	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	157	366	2	ENST00000367921.3:c.1856+1G>A		p.X619_splice	ENST00000367921	NM_006182.2	619																																																																															
IL10	3586	MSKCC	GRCh37	1	206945619	206945619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	252	488	0	ENST00000423557.1:c.162C>A	p.Phe54Leu	p.F54L	ENST00000423557	NM_000572.2	54	ttC/ttA																																																																														
PARP1	142	MSKCC	GRCh37	1	226578214	226578214	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	238	548	0	ENST00000366794.5:c.514T>G	p.Phe172Val	p.F172V	ENST00000366794	NM_001618.3	172	Ttc/Gtc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716138	243716138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	163	601	0	ENST00000263826.5:c.1056G>T	p.Glu352Asp	p.E352D	ENST00000263826	NM_005465.4	352	gaG/gaT																																																																														
AKT3	10000	MSKCC	GRCh37	1	243736287	243736287	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	180	541	1	ENST00000263826.5:c.760G>T	p.Glu254Ter	p.E254*	ENST00000263826	NM_005465.4	254	Gaa/Taa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243828116	243828116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	206	547	0	ENST00000263826.5:c.242C>T	p.Thr81Ile	p.T81I	ENST00000263826	NM_005465.4	81	aCt/aTt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25466788	25466788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	232	545	0	ENST00000264709.3:c.1915C>A	p.Leu639Ile	p.L639I	ENST00000264709	NM_175629.2	639	Ctc/Atc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25498407	25498407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	228	472	0	ENST00000264709.3:c.454G>A	p.Glu152Lys	p.E152K	ENST00000264709	NM_175629.2	152	Gaa/Aaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25964963	25964963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	266	478	2	ENST00000435504.4:c.4243G>A	p.Ala1415Thr	p.A1415T	ENST00000435504		1415	Gct/Act																																																																														
ALK	238	MSKCC	GRCh37	2	29519761	29519761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	182	436	0	ENST00000389048.3:c.1810T>C	p.Ser604Pro	p.S604P	ENST00000389048	NM_004304.4	604	Tct/Cct																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47601060	47601060	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149274310		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	225	474	0	ENST00000263735.4:c.298G>A	p.Asp100Asn	p.D100N	ENST00000263735	NM_002354.2	100	Gat/Aat																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702266	47702266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	194	586	0	ENST00000233146.2:c.1862G>A	p.Arg621Gln	p.R621Q	ENST00000233146	NM_000251.2	621	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010582	48010582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	158	331	0	ENST00000234420.5:c.210G>T	p.Lys70Asn	p.K70N	ENST00000234420	NM_000179.2	70	aaG/aaT																																																																														
MSH6	2956	MSKCC	GRCh37	2	48023108	48023108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	317	710	0	ENST00000234420.5:c.533G>A	p.Arg178His	p.R178H	ENST00000234420	NM_000179.2	178	cGt/cAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026763	48026763	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	169	436	0	ENST00000234420.5:c.1641A>C	p.Glu547Asp	p.E547D	ENST00000234420	NM_000179.2	547	gaA/gaC																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027751	48027751	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	201	597	0	ENST00000234420.5:c.2629G>T	p.Glu877Ter	p.E877*	ENST00000234420	NM_000179.2	877	Gaa/Taa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634746	158634746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	303	764	1	ENST00000263640.3:c.440G>A	p.Arg147Gln	p.R147Q	ENST00000263640	NM_001105.4	147	cGa/cAa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	208	452	0	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190670399	190670399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	181	578	0	ENST00000441310.2:c.337G>A	p.Ala113Thr	p.A113T	ENST00000441310	NM_000534.4	113	Gct/Act																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266573	198266573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	184	523	0	ENST00000335508.6:c.2263C>T	p.Pro755Ser	p.P755S	ENST00000335508	NM_012433.2	755	Cct/Tct																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736118	204736118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	226	627	1	ENST00000302823.3:c.475G>T	p.Asp159Tyr	p.D159Y	ENST00000302823	NM_005214.4	159	Gat/Tat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248498	212248498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	255	616	2	ENST00000342788.4:c.3769G>T	p.Asp1257Tyr	p.D1257Y	ENST00000342788	NM_005235.2	1257	Gac/Tac																																																																														
BARD1	580	MSKCC	GRCh37	2	215593560	215593560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	245	449	0	ENST00000260947.4:c.2174G>T	p.Arg725Ile	p.R725I	ENST00000260947	NM_000465.2	725	aGa/aTa																																																																														
BARD1	580	MSKCC	GRCh37	2	215657048	215657048	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	164	507	0	ENST00000260947.4:c.337A>C	p.Asn113His	p.N113H	ENST00000260947	NM_000465.2	113	Aat/Cat																																																																														
BARD1	580	MSKCC	GRCh37	2	215657051	215657051	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	175	506	2	ENST00000260947.4:c.334C>T	p.Arg112Ter	p.R112*	ENST00000260947	NM_000465.2	112	Cga/Tga																																																																														
INHA	3623	MSKCC	GRCh37	2	220439482	220439482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	284	596	0	ENST00000243786.2:c.335G>T	p.Arg112Ile	p.R112I	ENST00000243786	NM_002191.3	112	aGa/aTa																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242800986	242800986	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	210	545	0	ENST00000334409.5:c.5A>G	p.Gln2Arg	p.Q2R	ENST00000334409	NM_005018.2	2	cAg/cGg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626689	12626689	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	247	595	0	ENST00000251849.4:c.1600T>G	p.Tyr534Asp	p.Y534D	ENST00000251849	NM_002880.3	534	Tat/Gat																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30733088	30733088	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	181	361	0	ENST00000359013.4:c.1776A>C	p.Lys592Asn	p.K592N	ENST00000359013	NM_001024847.2	592	aaA/aaC																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180402	38180402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	224	508	0	ENST00000396334.3:c.250A>G	p.Thr84Ala	p.T84A	ENST00000396334	NM_002468.4	84	Act/Gct																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182283	38182283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	248	562	0	ENST00000396334.3:c.719A>G	p.Tyr240Cys	p.Y240C	ENST00000396334	NM_002468.4	240	tAc/tGc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266527	41266527	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	228	571	0	ENST00000349496.5:c.324G>T	p.Gln108His	p.Q108H	ENST00000349496	NM_001904.3	108	caG/caT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47079168	47079168	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	263	604	0	ENST00000409792.3:c.7338A>C	p.Glu2446Asp	p.E2446D	ENST00000409792	NM_014159.6	2446	gaA/gaC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098912	47098912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	226	503	1	ENST00000409792.3:c.6362G>A	p.Arg2121His	p.R2121H	ENST00000409792	NM_014159.6	2121	cGc/cAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164133	47164133	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	129	470	0	ENST00000409792.3:c.1993A>C	p.Ser665Arg	p.S665R	ENST00000409792	NM_014159.6	665	Agt/Cgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165174	47165174	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	215	488	0	ENST00000409792.3:c.952T>G	p.Phe318Val	p.F318V	ENST00000409792	NM_014159.6	318	Ttt/Gtt																																																																														
RHOA	387	MSKCC	GRCh37	3	49405966	49405966	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	287	613	0	ENST00000418115.1:c.172T>C	p.Trp58Arg	p.W58R	ENST00000418115	NM_001664.2	58	Tgg/Cgg																																																																														
MST1	4485	MSKCC	GRCh37	3	49721541	49721541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	147	489	0	ENST00000449682.2:c.2098G>A	p.Ala700Thr	p.A700T	ENST00000449682	NM_020998.3	700	Gca/Aca																																																																														
MST1	4485	MSKCC	GRCh37	3	49721854	49721854	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	68	150	0	ENST00000449682.2:c.1909T>G	p.Leu637Val	p.L637V	ENST00000449682	NM_020998.3	637	Ttg/Gtg																																																																														
MST1	4485	MSKCC	GRCh37	3	49725191	49725191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	106	234	1	ENST00000449682.2:c.234G>T	p.Met78Ile	p.M78I	ENST00000449682	NM_020998.3	78	atG/atT																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936370	49936370	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	329	845	0	ENST00000296474.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000296474	NM_002447.2	493	gAc/gGc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940813	49940813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	318	795	3	ENST00000296474.3:c.230G>A	p.Arg77His	p.R77H	ENST00000296474	NM_002447.2	77	cGc/cAc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439281	52439281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143891879		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	154	344	0	ENST00000460680.1:c.961G>A	p.Ala321Thr	p.A321T	ENST00000460680	NM_004656.3	321	Gca/Aca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584803	52584803	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	291	711	0	ENST00000394830.3:c.4319T>C	p.Val1440Ala	p.V1440A	ENST00000394830	NM_018313.4	1440	gTa/gCa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620542	52620542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	306	567	0	ENST00000394830.3:c.3211C>T	p.Arg1071Cys	p.R1071C	ENST00000394830	NM_018313.4	1071	Cgc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643843	52643843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	208	553	1	ENST00000394830.3:c.2053C>A	p.Leu685Met	p.L685M	ENST00000394830	NM_018313.4	685	Ctg/Atg																																																																														
MITF	4286	MSKCC	GRCh37	3	69987025	69987025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	296	677	1	ENST00000352241.4:c.407G>A	p.Arg136Gln	p.R136Q	ENST00000352241	NM_198159.2	136	cGg/cAg																																																																														
MITF	4286	MSKCC	GRCh37	3	69990453	69990453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	175	446	0	ENST00000352241.4:c.733A>G	p.Met245Val	p.M245V	ENST00000352241	NM_198159.2	245	Atg/Gtg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71019954	71019954	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	187	389	0	ENST00000318789.4:c.1655A>G	p.Asn552Ser	p.N552S	ENST00000318789	NM_032682.5	552	aAc/aGc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021809	71021809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	170	482	0	ENST00000318789.4:c.1549C>A	p.Leu517Ile	p.L517I	ENST00000318789	NM_032682.5	517	Ctt/Att																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026112	71026112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	186	540	0	ENST00000318789.4:c.1510C>T	p.Arg504Cys	p.R504C	ENST00000318789	NM_032682.5	504	Cgc/Tgc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71096171	71096171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	205	413	1	ENST00000318789.4:c.586C>T	p.Leu196Phe	p.L196F	ENST00000318789	NM_032682.5	196	Ctc/Ttc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71161721	71161721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	278	647	1	ENST00000318789.4:c.248C>T	p.Ser83Phe	p.S83F	ENST00000318789	NM_032682.5	83	tCt/tTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259135	89259135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	176	499	0	ENST00000336596.2:c.279G>T	p.Gln93His	p.Q93H	ENST00000336596	NM_005233.5	93	caG/caT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259223	89259223	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	176	466	0	ENST00000336596.2:c.367T>C	p.Tyr123His	p.Y123H	ENST00000336596	NM_005233.5	123	Tac/Cac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259538	89259538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	141	462	0	ENST00000336596.2:c.682G>T	p.Gly228Trp	p.G228W	ENST00000336596	NM_005233.5	228	Ggg/Tgg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391154	89391154	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	188	467	0	ENST00000336596.2:c.1220T>G	p.Phe407Cys	p.F407C	ENST00000336596	NM_005233.5	407	tTt/tGt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89457231	89457231	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	91	443	0	ENST00000336596.2:c.1712A>C	p.Lys571Thr	p.K571T	ENST00000336596	NM_005233.5	571	aAg/aCg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670219	134670219	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	226	450	0	ENST00000398015.3:c.130G>T	p.Glu44Ter	p.E44*	ENST00000398015	NM_004441.4	44	Gaa/Taa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670615	134670615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	241	671	0	ENST00000398015.3:c.526G>A	p.Ala176Thr	p.A176T	ENST00000398015	NM_004441.4	176	Gct/Act																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670844	134670844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	95	203	1	ENST00000398015.3:c.755G>A	p.Arg252Gln	p.R252Q	ENST00000398015	NM_004441.4	252	cGa/cAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134884813	134884813	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	168	373	0	ENST00000398015.3:c.1589A>G	p.Asp530Gly	p.D530G	ENST00000398015	NM_004441.4	530	gAt/gGt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898789	134898789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	194	554	0	ENST00000398015.3:c.1847T>C	p.Val616Ala	p.V616A	ENST00000398015	NM_004441.4	616	gTa/gCa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967270	134967270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	233	580	0	ENST00000398015.3:c.2609G>A	p.Arg870Gln	p.R870Q	ENST00000398015	NM_004441.4	870	cGg/cAg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138382870	138382870	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	187	494	0	ENST00000289153.2:c.2674G>T	p.Asp892Tyr	p.D892Y	ENST00000289153	NM_006219.2	892	Gat/Tat																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417853	138417853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	216	571	0	ENST00000289153.2:c.1666G>T	p.Asp556Tyr	p.D556Y	ENST00000289153	NM_006219.2	556	Gat/Tat																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138431116	138431116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	217	523	0	ENST00000289153.2:c.1333G>A	p.Val445Ile	p.V445I	ENST00000289153	NM_006219.2	445	Gtt/Att																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138452213	138452213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	232	550	0	ENST00000289153.2:c.1040A>G	p.Glu347Gly	p.E347G	ENST00000289153	NM_006219.2	347	gAa/gGa																																																																														
ATR	545	MSKCC	GRCh37	3	142188288	142188288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1470834016		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	178	544	0	ENST00000350721.4:c.6443G>A	p.Arg2148Gln	p.R2148Q	ENST00000350721	NM_001184.3	2148	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142188945	142188945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	163	580	0	ENST00000350721.4:c.6302C>A	p.Ala2101Glu	p.A2101E	ENST00000350721	NM_001184.3	2101	gCa/gAa																																																																														
ATR	545	MSKCC	GRCh37	3	142259767	142259767	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	143	476	0	ENST00000350721.4:c.3560A>G	p.Asp1187Gly	p.D1187G	ENST00000350721	NM_001184.3	1187	gAt/gGt																																																																														
TP63	8626	MSKCC	GRCh37	3	189586472	189586472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	156	312	0	ENST00000264731.3:c.1096G>A	p.Asp366Asn	p.D366N	ENST00000264731	NM_003722.4	366	Gac/Aac																																																																														
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	211	458	2	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133483	55133483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	255	595	0	ENST00000257290.5:c.787G>T	p.Glu263Ter	p.E263*	ENST00000257290	NM_006206.4	263	Gaa/Taa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138572	55138572	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	208	471	0	ENST00000257290.5:c.1249A>G	p.Ile417Val	p.I417V	ENST00000257290	NM_006206.4	417	Att/Gtt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156535	55156535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	239	537	0	ENST00000257290.5:c.2936G>A	p.Arg979His	p.R979H	ENST00000257290	NM_006206.4	979	cGc/cAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55597538	55597538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	149	544	0	ENST00000288135.5:c.2186C>A	p.Ser729Tyr	p.S729Y	ENST00000288135	NM_000222.2	729	tCt/tAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55602667	55602667	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	157	446	0	ENST00000288135.5:c.2488C>T	p.Arg830Ter	p.R830*	ENST00000288135	NM_000222.2	830	Cga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55970834	55970834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	243	600	0	ENST00000263923.4:c.1963G>A	p.Val655Met	p.V655M	ENST00000263923	NM_002253.2	655	Gtg/Atg																																																																														
KDR	3791	MSKCC	GRCh37	4	55980368	55980368	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	179	687	1	ENST00000263923.4:c.723G>T	p.Lys241Asn	p.K241N	ENST00000263923	NM_002253.2	241	aaG/aaT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197717	66197717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	134	509	0	ENST00000273854.3:c.2982G>T	p.Met994Ile	p.M994I	ENST00000273854	NM_004439.5	994	atG/atT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201756	66201756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	239	598	0	ENST00000273854.3:c.2746C>G	p.Gln916Glu	p.Q916E	ENST00000273854	NM_004439.5	916	Cag/Gag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213915	66213915	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	136	551	0	ENST00000273854.3:c.2515A>G	p.Lys839Glu	p.K839E	ENST00000273854	NM_004439.5	839	Aaa/Gaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467716	66467716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	193	538	0	ENST00000273854.3:c.553G>A	p.Glu185Lys	p.E185K	ENST00000273854	NM_004439.5	185	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106155850	106155850	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	206	515	1	ENST00000380013.4:c.751G>C	p.Ala251Pro	p.A251P	ENST00000380013	NM_001127208.2	251	Gcc/Ccc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156424	106156424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	251	639	0	ENST00000380013.4:c.1325A>G	p.Asn442Ser	p.N442S	ENST00000380013	NM_001127208.2	442	aAc/aGc																																																																														
TET2	54790	MSKCC	GRCh37	4	106180832	106180832	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	182	545	1	ENST00000380013.4:c.3860T>G	p.Phe1287Cys	p.F1287C	ENST00000380013	NM_001127208.2	1287	tTt/tGt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159104	143159104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	127	662	0	ENST00000262992.4:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000262992	NM_001101669.1	250	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268182	153268182	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	189	491	0	ENST00000281708.4:c.626T>G	p.Phe209Cys	p.F209C	ENST00000281708	NM_033632.3	209	tTt/tGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332915	153332915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200698994		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	172	454	0	ENST00000281708.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000281708	NM_033632.3	14	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517921	187517921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	213	578	0	ENST00000441802.2:c.12773C>T	p.Pro4258Leu	p.P4258L	ENST00000441802	NM_005245.3	4258	cCg/cTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522466	187522466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	219	807	0	ENST00000441802.2:c.11597C>T	p.Ala3866Val	p.A3866V	ENST00000441802	NM_005245.3	3866	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549912	187549912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	153	397	0	ENST00000441802.2:c.4329C>A	p.Phe1443Leu	p.F1443L	ENST00000441802	NM_005245.3	1443	ttC/ttA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628637	187628637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199928348		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	229	554	0	ENST00000441802.2:c.2345G>A	p.Arg782His	p.R782H	ENST00000441802	NM_005245.3	782	cGt/cAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630661	187630661	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	219	641	0	ENST00000441802.2:c.321T>G	p.Ile107Met	p.I107M	ENST00000441802	NM_005245.3	107	atT/atG																																																																														
SDHA	6389	MSKCC	GRCh37	5	224478	224478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	63	56	0	ENST00000264932.6:c.154T>C	p.Ser52Pro	p.S52P	ENST00000264932	NM_004168.2	52	Tct/Cct																																																																														
TERT	7015	MSKCC	GRCh37	5	1278815	1278815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	181	510	1	ENST00000310581.5:c.2227C>T	p.Arg743Trp	p.R743W	ENST00000310581	NM_198253.2	743	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295298	1295298	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	125	322	0				ENST00000310581	NM_198253.2																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56161265	56161265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	163	411	0	ENST00000399503.3:c.1134A>C	p.Lys378Asn	p.K378N	ENST00000399503	NM_005921.1	378	aaA/aaC																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56179422	56179422	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	229	561	0	ENST00000399503.3:c.3735A>C	p.Lys1245Asn	p.K1245N	ENST00000399503	NM_005921.1	1245	aaA/aaC																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750594	57750594	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	159	397	1	ENST00000274289.3:c.1874T>C	p.Phe625Ser	p.F625S	ENST00000274289	NM_006622.3	625	tTc/tCc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753015	57753015	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	185	606	0	ENST00000274289.3:c.1001T>G	p.Phe334Cys	p.F334C	ENST00000274289	NM_006622.3	334	tTt/tGt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576407	67576407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	178	559	0	ENST00000274335.5:c.686C>T	p.Ser229Leu	p.S229L	ENST00000274335		229	tCg/tTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589558	67589558	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	121	415	0	ENST00000274335.5:c.1321A>C	p.Asn441His	p.N441H	ENST00000274335		441	Aat/Cat																																																																														
RASA1	5921	MSKCC	GRCh37	5	86665697	86665697	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	127	516	0	ENST00000274376.6:c.1678G>T	p.Glu560Ter	p.E560*	ENST00000274376	NM_002890.2	560	Gaa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670690	86670690	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	144	394	0	ENST00000274376.6:c.1968A>G	p.Ile656Met	p.I656M	ENST00000274376	NM_002890.2	656	atA/atG																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685209	86685209	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	203	466	0	ENST00000274376.6:c.2926-1G>T		p.X976_splice	ENST00000274376	NM_002890.2	976																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	212	400	0	ENST00000257430.4:c.4199C>T	p.Ser1400Leu	p.S1400L	ENST00000257430	NM_000038.5	1400	tCg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112176828	112176828	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	180	574	0	ENST00000257430.4:c.5537A>G	p.Tyr1846Cys	p.Y1846C	ENST00000257430	NM_000038.5	1846	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112178682	112178682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	245	614	0	ENST00000257430.4:c.7391C>A	p.Ser2464Tyr	p.S2464Y	ENST00000257430	NM_000038.5	2464	tCt/tAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131925404	131925404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	135	336	0	ENST00000265335.6:c.1327A>C	p.Ile443Leu	p.I443L	ENST00000265335		443	Att/Ctt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131944865	131944865	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	150	452	0	ENST00000265335.6:c.2886G>T	p.Glu962Asp	p.E962D	ENST00000265335		962	gaG/gaT																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149456995	149456995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	141	324	1	ENST00000286301.3:c.733G>A	p.Ala245Thr	p.A245T	ENST00000286301	NM_005211.3	245	Gca/Aca																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509442	149509442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	225	631	0	ENST00000261799.4:c.1457A>G	p.Glu486Gly	p.E486G	ENST00000261799	NM_002609.3	486	gAg/gGg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638875	176638875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	310	623	0	ENST00000439151.2:c.3475C>T	p.Arg1159Trp	p.R1159W	ENST00000439151	NM_022455.4	1159	Cgg/Tgg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056376	180056376	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	244	555	0	ENST00000261937.6:c.868G>T	p.Glu290Ter	p.E290*	ENST00000261937	NM_182925.4	290	Gaa/Taa																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158491	26158491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	209	359	0	ENST00000289316.2:c.94C>T	p.Arg32Cys	p.R32C	ENST00000289316	NM_138720.2	32	Cgc/Tgc																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858261	27858261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	298	805	0	ENST00000359303.2:c.310C>A	p.Leu104Ile	p.L104I	ENST00000359303	NM_003535.2	104	Ctc/Atc																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858492	27858492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	280	733	0	ENST00000359303.2:c.79C>T	p.Arg27Cys	p.R27C	ENST00000359303	NM_003535.2	27	Cgc/Tgc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681476	30681476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	206	610	0	ENST00000376406.3:c.536G>A	p.Arg179His	p.R179H	ENST00000376406	NM_014641.2	179	cGt/cAt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163530	32163530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	179	478	0	ENST00000375023.3:c.5696G>T	p.Ser1899Ile	p.S1899I	ENST00000375023	NM_004557.3	1899	aGc/aTc																																																																														
PIM1	5292	MSKCC	GRCh37	6	37138919	37138919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	193	386	0	ENST00000373509.5:c.259C>T	p.Pro87Ser	p.P87S	ENST00000373509	NM_002648.3	87	Ccc/Tcc																																																																														
CCND3	896	MSKCC	GRCh37	6	41903835	41903835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	142	289	0	ENST00000372991.4:c.722G>A	p.Arg241Gln	p.R241Q	ENST00000372991	NM_001760.3	241	cGg/cAg																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43745233	43745233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	322	790	5	ENST00000523873.1:c.146G>A	p.Arg49His	p.R49H	ENST00000523873		49	cGc/cAc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43746655	43746655	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	322	742	2	ENST00000523873.1:c.422A>G	p.Lys141Arg	p.K141R	ENST00000523873		141	aAa/aGa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120557	94120557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	316	833	0	ENST00000369303.4:c.494T>C	p.Met165Thr	p.M165T	ENST00000369303	NM_004440.3	165	aTg/aCg																																																																														
FYN	2534	MSKCC	GRCh37	6	112017478	112017478	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	231	523	0	ENST00000368678.4:c.1033+2T>C		p.X345_splice	ENST00000368678		345																																																																															
FYN	2534	MSKCC	GRCh37	6	112017660	112017660	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	260	598	0	ENST00000368678.4:c.854-1G>A		p.X285_splice	ENST00000368678		285																																																																															
ROS1	6098	MSKCC	GRCh37	6	117717414	117717414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	205	590	0	ENST00000368508.3:c.793G>A	p.Ala265Thr	p.A265T	ENST00000368508	NM_002944.2	265	Gca/Aca																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001477	150001477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	146	473	1	ENST00000253339.5:c.2127G>T	p.Lys709Asn	p.K709N	ENST00000253339		709	aaG/aaT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976790	2976790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	267	764	1	ENST00000396946.4:c.1222C>T	p.Arg408Cys	p.R408C	ENST00000396946	NM_032415.4	408	Cgc/Tgc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026391	6026391	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	151	268	0	ENST00000265849.7:c.2005A>C	p.Ser669Arg	p.S669R	ENST00000265849	NM_000535.5	669	Agt/Cgt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6043355	6043355	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188006077		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	74	176	0	ENST00000265849.7:c.319C>T	p.Arg107Trp	p.R107W	ENST00000265849	NM_000535.5	107	Cgg/Tgg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450336	50450336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	221	490	0	ENST00000331340.3:c.520A>G	p.Lys174Glu	p.K174E	ENST00000331340	NM_006060.4	174	Aaa/Gaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227930	55227930	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	224	657	0	ENST00000275493.2:c.1397A>C	p.Asn466Thr	p.N466T	ENST00000275493	NM_005228.3	466	aAc/aCc																																																																														
HGF	3082	MSKCC	GRCh37	7	81392146	81392146	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	134	570	0	ENST00000222390.5:c.131A>C	p.Lys44Thr	p.K44T	ENST00000222390	NM_000601.4	44	aAa/aCa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508768	106508768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	227	473	0	ENST00000359195.3:c.762G>T	p.Lys254Asn	p.K254N	ENST00000359195	NM_002649.2	254	aaG/aaT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526650	106526650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	208	556	1	ENST00000359195.3:c.2943G>T	p.Glu981Asp	p.E981D	ENST00000359195	NM_002649.2	981	gaG/gaT																																																																														
MET	4233	MSKCC	GRCh37	7	116435767	116435767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	234	571	0	ENST00000397752.3:c.3857A>G	p.Asp1286Gly	p.D1286G	ENST00000397752	NM_000245.2	1286	gAc/gGc																																																																														
MET	4233	MSKCC	GRCh37	7	116436176	116436176	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	150	316	0	ENST00000397752.3:c.4171T>C	p.Ter1391GlnextTer2	p.*1391Qext*2	ENST00000397752	NM_000245.2	1391	Tag/Cag																																																																														
SMO	6608	MSKCC	GRCh37	7	128850335	128850335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	218	491	0	ENST00000249373.3:c.1598G>T	p.Ser533Ile	p.S533I	ENST00000249373	NM_005631.4	533	aGc/aTc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525868	148525868	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	219	661	0	ENST00000320356.2:c.589G>T	p.Glu197Ter	p.E197*	ENST00000320356	NM_004456.4	197	Gaa/Taa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148526829	148526829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	143	645	1	ENST00000320356.2:c.475G>A	p.Gly159Arg	p.G159R	ENST00000320356	NM_004456.4	159	Ggg/Agg																																																																														
RHEB	6009	MSKCC	GRCh37	7	151167701	151167701	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	180	539	0	ENST00000262187.5:c.418T>C	p.Ser140Pro	p.S140P	ENST00000262187	NM_005614.3	140	Tct/Cct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859338	151859338	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	237	517	0	ENST00000262189.6:c.11324A>C	p.Glu3775Ala	p.E3775A	ENST00000262189	NM_170606.2	3775	gAa/gCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860599	151860599	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	246	589	0	ENST00000262189.6:c.10063A>C	p.Ile3355Leu	p.I3355L	ENST00000262189	NM_170606.2	3355	Att/Ctt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874251	151874251	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	172	540	0	ENST00000262189.6:c.8287G>T	p.Glu2763Ter	p.E2763*	ENST00000262189	NM_170606.2	2763	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874709	151874709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139770288		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	228	454	2	ENST00000262189.6:c.7829G>A	p.Arg2610Gln	p.R2610Q	ENST00000262189	NM_170606.2	2610	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879228	151879228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200152380		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	223	607	0	ENST00000262189.6:c.5717G>A	p.Arg1906Gln	p.R1906Q	ENST00000262189	NM_170606.2	1906	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151948016	151948016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	208	604	1	ENST00000262189.6:c.1657G>T	p.Asp553Tyr	p.D553Y	ENST00000262189	NM_170606.2	553	Gat/Tat																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345963	152345963	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	346	809	0	ENST00000359321.1:c.607T>G	p.Ser203Ala	p.S203A	ENST00000359321	NM_005431.1	203	Tcg/Gcg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090520	5090520	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	148	525	0	ENST00000381652.3:c.2836G>T	p.Glu946Ter	p.E946*	ENST00000381652	NM_004972.3	946	Gaa/Taa																																																																														
CD274	29126	MSKCC	GRCh37	9	5467842	5467842	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	238	497	1	ENST00000381577.3:c.853A>G	p.Thr285Ala	p.T285A	ENST00000381577	NM_014143.3	285	Aca/Gca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484349	8484349	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	185	556	0	ENST00000356435.5:c.3183A>C	p.Glu1061Asp	p.E1061D	ENST00000356435		1061	gaA/gaC																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499694	8499694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	211	536	0	ENST00000356435.5:c.2275C>T	p.Pro759Ser	p.P759S	ENST00000356435		759	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500788	8500788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	210	425	0	ENST00000356435.5:c.2094G>T	p.Glu698Asp	p.E698D	ENST00000356435		698	gaG/gaT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507432	8507432	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	107	374	0	ENST00000356435.5:c.1546C>T	p.Pro516Ser	p.P516S	ENST00000356435		516	Cca/Tca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528596	8528596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	235	599	1	ENST00000356435.5:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000356435		179	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633358	8633358	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	166	682	0	ENST00000356435.5:c.311T>C	p.Val104Ala	p.V104A	ENST00000356435		104	gTg/gCg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37002659	37002659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	159	405	0	ENST00000358127.4:c.590G>A	p.Arg197His	p.R197H	ENST00000358127	NM_001280556.1	197	cGc/cAc																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015022	37015022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	213	429	0	ENST00000358127.4:c.382A>G	p.Thr128Ala	p.T128A	ENST00000358127	NM_001280556.1	128	Acc/Gcc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285847	87285847	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	245	614	0	ENST00000277120.3:c.184A>C	p.Ser62Arg	p.S62R	ENST00000277120		62	Agt/Cgt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87325682	87325682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	159	570	0	ENST00000277120.3:c.559G>A	p.Ala187Thr	p.A187T	ENST00000277120		187	Gca/Aca																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482309	87482309	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	267	663	0	ENST00000277120.3:c.1596C>A	p.Tyr532Ter	p.Y532*	ENST00000277120		532	taC/taA																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570282	87570282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	184	403	0	ENST00000277120.3:c.2022G>T	p.Gln674His	p.Q674H	ENST00000277120		674	caG/caT																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87636204	87636204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	198	460	0	ENST00000277120.3:c.2369G>A	p.Arg790Gln	p.R790Q	ENST00000277120		790	cGa/cAa																																																																														
FANCC	2176	MSKCC	GRCh37	9	97897776	97897776	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	151	446	0	ENST00000289081.3:c.695T>G	p.Ile232Ser	p.I232S	ENST00000289081	NM_000136.2	232	aTt/aGt																																																																														
FANCC	2176	MSKCC	GRCh37	9	97912218	97912218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	254	565	0	ENST00000289081.3:c.673G>A	p.Glu225Lys	p.E225K	ENST00000289081	NM_000136.2	225	Gag/Aag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229475	98229475	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	265	665	0	ENST00000331920.6:c.2483A>G	p.Asn828Ser	p.N828S	ENST00000331920	NM_000264.3	828	aAc/aGc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894916	101894916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	261	618	0	ENST00000374994.4:c.469C>T	p.Arg157Ter	p.R157*	ENST00000374994	NM_004612.2	157	Cga/Tga																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915943	127915943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	261	756	0	ENST00000373547.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000373547	NM_002721.4	180	Gaa/Aaa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781234	135781234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	329	837	0	ENST00000298552.3:c.1731G>T	p.Glu577Asp	p.E577D	ENST00000298552	NM_001162426.1	577	gaG/gaT																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797298	135797298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	190	493	0	ENST00000298552.3:c.571C>T	p.Leu191Phe	p.L191F	ENST00000298552	NM_001162426.1	191	Ctt/Ttt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797313	135797313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	162	441	0	ENST00000298552.3:c.556G>A	p.Ala186Thr	p.A186T	ENST00000298552	NM_001162426.1	186	Gca/Aca																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139566734	139566734	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144969763		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	223	603	0	ENST00000308874.7:c.818C>T	p.Ser273Leu	p.S273L	ENST00000308874		273	tCg/tTg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814824	139814824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	295	797	0	ENST00000247668.2:c.817G>A	p.Glu273Lys	p.E273K	ENST00000247668	NM_021138.3	273	Gag/Aag																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814912	139814912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	284	824	0	ENST00000247668.2:c.905C>T	p.Ala302Val	p.A302V	ENST00000247668	NM_021138.3	302	gCc/gTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100573	8100573	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	198	475	0	ENST00000346208.3:c.547T>C	p.Cys183Arg	p.C183R	ENST00000346208		183	Tgc/Cgc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100768	8100768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	162	391	0	ENST00000346208.3:c.742G>A	p.Gly248Arg	p.G248R	ENST00000346208		248	Gga/Aga																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106013	8106013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	189	369	0	ENST00000346208.3:c.833G>A	p.Gly278Asp	p.G278D	ENST00000346208		278	gGc/gAc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845621	63845621	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	125	289	0	ENST00000279873.7:c.1360G>T	p.Glu454Ter	p.E454*	ENST00000279873	NM_032199.2	454	Gaa/Taa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332272	70332272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	297	732	0	ENST00000373644.4:c.177G>T	p.Lys59Asn	p.K59N	ENST00000373644	NM_030625.2	59	aaG/aaT																																																																														
TET1	80312	MSKCC	GRCh37	10	70406042	70406042	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	168	603	0	ENST00000373644.4:c.3556A>C	p.Ile1186Leu	p.I1186L	ENST00000373644	NM_030625.2	1186	Ata/Cta																																																																														
TET1	80312	MSKCC	GRCh37	10	70406089	70406089	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	160	561	2	ENST00000373644.4:c.3603T>G	p.Phe1201Leu	p.F1201L	ENST00000373644	NM_030625.2	1201	ttT/ttG																																																																														
HRAS	3265	MSKCC	GRCh37	11	534248	534248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	274	584	0	ENST00000311189.7:c.75G>T	p.Gln25His	p.Q25H	ENST00000311189		25	caG/caT																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514124	69514124	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	252	555	0	ENST00000294312.3:c.557A>G	p.Asp186Gly	p.D186G	ENST00000294312	NM_005117.2	186	gAc/gGc																																																																														
EED	8726	MSKCC	GRCh37	11	85968618	85968618	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	178	547	0	ENST00000263360.6:c.614T>G	p.Leu205Arg	p.L205R	ENST00000263360	NM_003797.3	205	cTt/cGt																																																																														
EED	8726	MSKCC	GRCh37	11	85975226	85975226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	91	430	0	ENST00000263360.6:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000263360	NM_003797.3	216	cGa/cAa																																																																														
EED	8726	MSKCC	GRCh37	11	85977189	85977189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	136	500	0	ENST00000263360.6:c.791G>T	p.Arg264Met	p.R264M	ENST00000263360	NM_003797.3	264	aGg/aTg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195662	102195662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	309	855	0	ENST00000263464.3:c.422C>A	p.Ser141Tyr	p.S141Y	ENST00000263464	NM_001165.4	141	tCt/tAt																																																																														
ATM	472	MSKCC	GRCh37	11	108099982	108099982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	133	366	0	ENST00000278616.4:c.263C>T	p.Ala88Val	p.A88V	ENST00000278616	NM_000051.3	88	gCc/gTc																																																																														
ATM	472	MSKCC	GRCh37	11	108126964	108126964	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	198	490	0	ENST00000278616.4:c.2147T>C	p.Val716Ala	p.V716A	ENST00000278616	NM_000051.3	716	gTc/gCc																																																																														
ATM	472	MSKCC	GRCh37	11	108141873	108141873	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	214	484	0	ENST00000278616.4:c.2921C>T	p.Ser974Phe	p.S974F	ENST00000278616	NM_000051.3	974	tCc/tTc																																																																														
ATM	472	MSKCC	GRCh37	11	108141989	108141989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	149	406	0	ENST00000278616.4:c.2933C>A	p.Ser978Tyr	p.S978Y	ENST00000278616	NM_000051.3	978	tCt/tAt																																																																														
ATM	472	MSKCC	GRCh37	11	108153564	108153564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	183	509	0	ENST00000278616.4:c.3704C>A	p.Pro1235His	p.P1235H	ENST00000278616	NM_000051.3	1235	cCt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108196874	108196874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	147	482	0	ENST00000278616.4:c.6897C>A	p.Phe2299Leu	p.F2299L	ENST00000278616	NM_000051.3	2299	ttC/ttA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118368660	118368660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	178	385	0	ENST00000534358.1:c.5674C>T	p.Arg1892Cys	p.R1892C	ENST00000534358	NM_005933.3	1892	Cgt/Tgt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118371736	118371736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	202	446	1	ENST00000534358.1:c.6193C>T	p.Arg2065Cys	p.R2065C	ENST00000534358	NM_005933.3	2065	Cgc/Tgc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390362	118390362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	249	546	0	ENST00000534358.1:c.11176C>T	p.Leu3726Phe	p.L3726F	ENST00000534358	NM_005933.3	3726	Ctc/Ttc																																																																														
CBL	867	MSKCC	GRCh37	11	119077282	119077282	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	263	546	2	ENST00000264033.4:c.155A>C	p.Asp52Ala	p.D52A	ENST00000264033	NM_005188.3	52	gAc/gCc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497662	125497662	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	142	432	0	ENST00000428830.2:c.226G>T	p.Glu76Ter	p.E76*	ENST00000428830	NM_001114121.2	76	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	422237	422237	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	233	592	0	ENST00000399788.2:c.3021A>C	p.Lys1007Asn	p.K1007N	ENST00000399788	NM_001042603.1	1007	aaA/aaC																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435061	18435061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	91	483	0	ENST00000266497.5:c.46G>A	p.Glu16Lys	p.E16K	ENST00000266497		16	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25368397	25368397	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	158	574	0	ENST00000256078.4:c.548T>A	p.Ile183Asn	p.I183N	ENST00000256078	NM_033360.2	183	aTt/aAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46240651	46240651	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	100	378	0	ENST00000334344.6:c.1511T>C	p.Val504Ala	p.V504A	ENST00000334344	NM_152641.2	504	gTt/gCt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243909	46243909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	187	592	0	ENST00000334344.6:c.2003C>A	p.Ser668Tyr	p.S668Y	ENST00000334344	NM_152641.2	668	tCt/tAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246235	46246235	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	216	585	0	ENST00000334344.6:c.4329T>G	p.Ser1443Arg	p.S1443R	ENST00000334344	NM_152641.2	1443	agT/agG																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285869	46285869	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	133	442	0	ENST00000334344.6:c.5137T>C	p.Ser1713Pro	p.S1713P	ENST00000334344	NM_152641.2	1713	Tct/Cct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416447	49416447	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	230	564	1	ENST00000301067.7:c.16264A>C	p.Met5422Leu	p.M5422L	ENST00000301067	NM_003482.3	5422	Atg/Ctg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426001	49426001	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	270	590	0	ENST00000301067.7:c.12487C>A	p.Pro4163Thr	p.P4163T	ENST00000301067	NM_003482.3	4163	Ccc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426648	49426648	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	142	309	0	ENST00000301067.7:c.11840A>C	p.Gln3947Pro	p.Q3947P	ENST00000301067	NM_003482.3	3947	cAg/cCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427503	49427503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	195	529	0	ENST00000301067.7:c.10985T>C	p.Met3662Thr	p.M3662T	ENST00000301067	NM_003482.3	3662	aTg/aCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446445	49446445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	171	377	0	ENST00000301067.7:c.1160C>A	p.Ala387Asp	p.A387D	ENST00000301067	NM_003482.3	387	gCt/gAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446735	49446735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	192	443	2	ENST00000301067.7:c.1075C>A	p.Arg359Ser	p.R359S	ENST00000301067	NM_003482.3	359	Cgc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49449076	49449076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	267	592	0	ENST00000301067.7:c.32A>G	p.Lys11Arg	p.K11R	ENST00000301067	NM_003482.3	11	aAa/aGa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69210629	69210629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	200	577	0	ENST00000462284.1:c.212G>A	p.Arg71Gln	p.R71Q	ENST00000462284	NM_002392.5	71	cGa/cAa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233440	69233440	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	202	535	1	ENST00000462284.1:c.1305T>G	p.Ser435Arg	p.S435R	ENST00000462284	NM_002392.5	435	agT/agG																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885212	111885212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	268	757	0	ENST00000341259.2:c.1100G>A	p.Gly367Asp	p.G367D	ENST00000341259	NM_005475.2	367	gGc/gAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114125	115114125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	175	502	0	ENST00000257566.3:c.1092C>A	p.Asn364Lys	p.N364K	ENST00000257566	NM_016569.3	364	aaC/aaA																																																																														
POLE	5426	MSKCC	GRCh37	12	133219113	133219113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	210	546	1	ENST00000320574.5:c.4931C>T	p.Ser1644Leu	p.S1644L	ENST00000320574	NM_006231.2	1644	tCg/tTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133236037	133236037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	224	518	0	ENST00000320574.5:c.3119C>A	p.Ser1040Tyr	p.S1040Y	ENST00000320574	NM_006231.2	1040	tCt/tAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	228	566	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588592	28588592	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	211	614	0	ENST00000241453.7:c.2856A>T	p.Glu952Asp	p.E952D	ENST00000241453	NM_004119.2	952	gaA/gaT																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601376	28601376	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	157	453	0	ENST00000241453.7:c.2056C>T	p.Pro686Ser	p.P686S	ENST00000241453	NM_004119.2	686	Cca/Tca																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622581	28622581	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	82	279	0	ENST00000241453.7:c.1037-1G>T		p.X346_splice	ENST00000241453	NM_004119.2	346																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001410	29001410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	154	353	0	ENST00000282397.4:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000282397	NM_002019.4	441	cCg/cTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906796	32906796	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	144	709	0	ENST00000380152.3:c.1181A>G	p.Glu394Gly	p.E394G	ENST00000380152		394	gAa/gGa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912606	32912606	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	167	887	0	ENST00000380152.3:c.4114T>G	p.Phe1372Val	p.F1372V	ENST00000380152		1372	Ttt/Gtt																																																																														
RB1	5925	MSKCC	GRCh37	13	48951156	48951156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	124	408	0	ENST00000267163.4:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000267163	NM_000321.2	440	Gaa/Aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	48953748	48953748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	229	551	0	ENST00000267163.4:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000267163	NM_000321.2	451	Cgc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	49030456	49030456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	137	408	0	ENST00000267163.4:c.1931C>A	p.Ser644Tyr	p.S644Y	ENST00000267163	NM_000321.2	644	tCt/tAt																																																																														
RB1	5925	MSKCC	GRCh37	13	49030483	49030483	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	151	313	0	ENST00000267163.4:c.1958A>C	p.Lys653Thr	p.K653T	ENST00000267163	NM_000321.2	653	aAa/aCa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73345058	73345058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	145	383	0	ENST00000377767.4:c.1739G>T	p.Ser580Ile	p.S580I	ENST00000377767	NM_014953.3	580	aGt/aTt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514697	103514697	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	154	284	0	ENST00000355739.4:c.1198G>T	p.Asp400Tyr	p.D400Y	ENST00000355739	NM_000123.3	400	Gat/Tat																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515141	103515141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	203	431	0	ENST00000355739.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000355739	NM_000123.3	548	Gaa/Aaa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434991	110434991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	117	296	1	ENST00000375856.3:c.3410G>A	p.Arg1137His	p.R1137H	ENST00000375856	NM_003749.2	1137	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436187	110436187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	144	404	0	ENST00000375856.3:c.2214G>T	p.Glu738Asp	p.E738D	ENST00000375856	NM_003749.2	738	gaG/gaT																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436492	110436492	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	197	497	0	ENST00000375856.3:c.1909A>C	p.Ile637Leu	p.I637L	ENST00000375856	NM_003749.2	637	Atc/Ctc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061256	38061256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	202	528	0	ENST00000250448.2:c.733A>G	p.Thr245Ala	p.T245A	ENST00000250448	NM_004496.3	245	Acg/Gcg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610234	81610234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	224	491	0	ENST00000298171.2:c.1832C>T	p.Pro611Leu	p.P611L	ENST00000298171	NM_000369.2	611	cCg/cTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95556920	95556920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	219	508	0	ENST00000343455.3:c.5684G>A	p.Arg1895Gln	p.R1895Q	ENST00000343455	NM_177438.2	1895	cGa/cAa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557540	95557540	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	222	622	0	ENST00000343455.3:c.5527G>T	p.Glu1843Ter	p.E1843*	ENST00000343455	NM_177438.2	1843	Gaa/Taa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570433	95570433	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	128	255	0	ENST00000343455.3:c.3300A>C	p.Lys1100Asn	p.K1100N	ENST00000343455	NM_177438.2	1100	aaA/aaC																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590627	95590627	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	271	806	0	ENST00000343455.3:c.1282G>T	p.Glu428Ter	p.E428*	ENST00000343455	NM_177438.2	428	Gag/Tag																																																																														
AKT1	207	MSKCC	GRCh37	14	105236731	105236731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	234	589	2	ENST00000349310.3:c.1390G>A	p.Glu464Lys	p.E464K	ENST00000349310	NM_001014432.1	464	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	42003323	42003323	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	301	807	0	ENST00000219905.7:c.2860T>G	p.Phe954Val	p.F954V	ENST00000219905	NM_001164273.1	954	Ttt/Gtt																																																																														
MGA	23269	MSKCC	GRCh37	15	42005410	42005410	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	322	845	0	ENST00000219905.7:c.3146A>C	p.Asn1049Thr	p.N1049T	ENST00000219905	NM_001164273.1	1049	aAt/aCt																																																																														
MGA	23269	MSKCC	GRCh37	15	42042485	42042485	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	242	918	0	ENST00000219905.7:c.6680A>C	p.Lys2227Thr	p.K2227T	ENST00000219905	NM_001164273.1	2227	aAa/aCa																																																																														
MGA	23269	MSKCC	GRCh37	15	42052578	42052578	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	297	819	0	ENST00000219905.7:c.7249G>T	p.Glu2417Ter	p.E2417*	ENST00000219905	NM_001164273.1	2417	Gaa/Taa																																																																														
B2M	567	MSKCC	GRCh37	15	45007794	45007794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	197	440	0	ENST00000558401.1:c.241T>C	p.Ser81Pro	p.S81P	ENST00000558401	NM_004048.2	81	Tct/Cct																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88727487	88727487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	197	511	0	ENST00000360948.2:c.292G>T	p.Asp98Tyr	p.D98Y	ENST00000360948	NM_001012338.2	98	Gac/Tac																																																																														
BLM	641	MSKCC	GRCh37	15	91292798	91292798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	182	621	1	ENST00000355112.3:c.300G>T	p.Gln100His	p.Q100H	ENST00000355112	NM_000057.2	100	caG/caT																																																																														
BLM	641	MSKCC	GRCh37	15	91293253	91293253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	105	290	1	ENST00000355112.3:c.755C>T	p.Ala252Val	p.A252V	ENST00000355112	NM_000057.2	252	gCt/gTt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99192862	99192862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	213	561	0	ENST00000268035.6:c.52T>C	p.Phe18Leu	p.F18L	ENST00000268035	NM_000875.3	18	Ttt/Ctt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99442819	99442819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	217	437	0	ENST00000268035.6:c.1216C>T	p.Arg406Cys	p.R406C	ENST00000268035	NM_000875.3	406	Cgc/Tgc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456289	99456289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	172	424	1	ENST00000268035.6:c.1606A>G	p.Thr536Ala	p.T536A	ENST00000268035	NM_000875.3	536	Aca/Gca																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99486151	99486151	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	183	372	0	ENST00000268035.6:c.3458-1G>T		p.X1153_splice	ENST00000268035	NM_000875.3	1153																																																																															
AXIN1	8312	MSKCC	GRCh37	16	343685	343685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	269	670	0	ENST00000262320.3:c.1989G>T	p.Glu663Asp	p.E663D	ENST00000262320	NM_003502.3	663	gaG/gaT																																																																														
TSC2	7249	MSKCC	GRCh37	16	2098712	2098712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	252	513	0	ENST00000219476.3:c.96G>T	p.Glu32Asp	p.E32D	ENST00000219476	NM_000548.3	32	gaG/gaT																																																																														
TSC2	7249	MSKCC	GRCh37	16	2100479	2100479	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	213	498	0	ENST00000219476.3:c.217T>A	p.Phe73Ile	p.F73I	ENST00000219476	NM_000548.3	73	Ttt/Att																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121909	2121909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	184	495	0	ENST00000219476.3:c.2071C>T	p.Arg691Cys	p.R691C	ENST00000219476	NM_000548.3	691	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789684	3789684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	258	610	0	ENST00000262367.5:c.4175G>A	p.Arg1392Gln	p.R1392Q	ENST00000262367	NM_004380.2	1392	cGa/cAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832822	3832822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	248	550	0	ENST00000262367.5:c.1436G>T	p.Ser479Ile	p.S479I	ENST00000262367	NM_004380.2	479	aGc/aTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857464	9857464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	209	473	0	ENST00000330684.3:c.3937C>T	p.Leu1313Phe	p.L1313F	ENST00000330684	NM_001134407.1	1313	Ctc/Ttc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14024573	14024573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	160	497	0	ENST00000311895.7:c.799C>T	p.Arg267Cys	p.R267C	ENST00000311895	NM_005236.2	267	Cgc/Tgc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029576	14029576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	126	204	0	ENST00000311895.7:c.1787C>T	p.Ala596Val	p.A596V	ENST00000311895	NM_005236.2	596	gCg/gTg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23649442	23649442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	204	601	0	ENST00000261584.4:c.57G>T	p.Glu19Asp	p.E19D	ENST00000261584	NM_024675.3	19	gaG/gaT																																																																														
CBFB	865	MSKCC	GRCh37	16	67132671	67132671	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	235	609	0	ENST00000412916.2:c.554A>C	p.Lys185Thr	p.K185T	ENST00000412916		185	aAa/aCa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650710	67650710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	276	620	0	ENST00000264010.4:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000264010	NM_006565.3	339	Cgg/Tgg																																																																														
CDH1	999	MSKCC	GRCh37	16	68842445	68842445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	169	555	0	ENST00000261769.5:c.506G>A	p.Gly169Asp	p.G169D	ENST00000261769	NM_004360.3	169	gGc/gAc																																																																														
CDH1	999	MSKCC	GRCh37	16	68863571	68863571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	262	515	0	ENST00000261769.5:c.2310C>A	p.Ser770Arg	p.S770R	ENST00000261769	NM_004360.3	770	agC/agA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821909	72821909	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	210	549	0	ENST00000268489.5:c.10266A>C	p.Glu3422Asp	p.E3422D	ENST00000268489	NM_006885.3	3422	gaA/gaC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827964	72827964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	330	839	0	ENST00000268489.5:c.8617G>A	p.Glu2873Lys	p.E2873K	ENST00000268489	NM_006885.3	2873	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828699	72828699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	315	874	2	ENST00000268489.5:c.7882G>A	p.Glu2628Lys	p.E2628K	ENST00000268489	NM_006885.3	2628	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832615	72832615	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	210	495	0	ENST00000268489.5:c.3968-2A>G		p.X1323_splice	ENST00000268489	NM_006885.3	1323																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72993579	72993579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	304	697	1	ENST00000268489.5:c.466G>A	p.Ala156Thr	p.A156T	ENST00000268489	NM_006885.3	156	Gcc/Acc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888121	81888121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	309	734	0	ENST00000359376.3:c.266G>A	p.Arg89His	p.R89H	ENST00000359376	NM_002661.3	89	cGc/cAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944259	81944259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	278	716	2	ENST00000359376.3:c.1868G>A	p.Arg623His	p.R623H	ENST00000359376	NM_002661.3	623	cGc/cAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953133	81953133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	301	745	0	ENST00000359376.3:c.2099G>A	p.Arg700Gln	p.R700Q	ENST00000359376	NM_002661.3	700	cGg/cAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969848	81969848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	304	736	1	ENST00000359376.3:c.2917G>A	p.Asp973Asn	p.D973N	ENST00000359376	NM_002661.3	973	Gac/Aac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346993	89346993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	217	535	0	ENST00000301030.4:c.5957G>T	p.Arg1986Ile	p.R1986I	ENST00000301030	NM_001256183.1	1986	aGa/aTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348665	89348665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	339	937	3	ENST00000301030.4:c.4285G>T	p.Asp1429Tyr	p.D1429Y	ENST00000301030	NM_001256183.1	1429	Gat/Tat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349450	89349450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	355	894	1	ENST00000301030.4:c.3500C>A	p.Ser1167Tyr	p.S1167Y	ENST00000301030	NM_001256183.1	1167	tCt/tAt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979495	7979495	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	226	496	0	ENST00000319144.4:c.1530G>T	p.Glu510Asp	p.E510D	ENST00000319144	NM_001139.2	510	gaG/gaT																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108653	8108653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	270	551	0	ENST00000585124.1:c.742C>T	p.Arg248Cys	p.R248C	ENST00000585124	NM_004217.3	248	Cgc/Tgc																																																																														
AURKB	9212	MSKCC	GRCh37	17	8109883	8109883	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs146905713		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	278	612	0	ENST00000585124.1:c.612A>C	p.Glu204Asp	p.E204D	ENST00000585124	NM_004217.3	204	gaA/gaC																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12013730	12013730	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	168	408	0	ENST00000353533.5:c.672A>C	p.Lys224Asn	p.K224N	ENST00000353533	NM_003010.3	224	aaA/aaC																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15938151	15938151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	271	654	0	ENST00000268712.3:c.7063T>C	p.Ser2355Pro	p.S2355P	ENST00000268712	NM_006311.3	2355	Tct/Cct																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961900	15961900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	207	398	0	ENST00000268712.3:c.5895G>T	p.Arg1965Ser	p.R1965S	ENST00000268712	NM_006311.3	1965	agG/agT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971393	15971393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	234	484	0	ENST00000268712.3:c.4556C>T	p.Ser1519Leu	p.S1519L	ENST00000268712	NM_006311.3	1519	tCg/tTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973567	15973567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	240	469	0	ENST00000268712.3:c.4425T>G	p.Ile1475Met	p.I1475M	ENST00000268712	NM_006311.3	1475	atT/atG																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024364	16024364	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	197	379	0	ENST00000268712.3:c.1852+2T>C		p.X618_splice	ENST00000268712	NM_006311.3	618																																																																															
NF1	4763	MSKCC	GRCh37	17	29528141	29528141	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	157	559	0	ENST00000358273.4:c.1149C>A	p.Cys383Ter	p.C383*	ENST00000358273	NM_001042492.2	383	tgC/tgA																																																																														
NF1	4763	MSKCC	GRCh37	17	29528490	29528490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	170	716	0	ENST00000358273.4:c.1247G>A	p.Arg416Gln	p.R416Q	ENST00000358273	NM_001042492.2	416	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29560198	29560198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	138	334	0	ENST00000358273.4:c.3675G>T	p.Met1225Ile	p.M1225I	ENST00000358273	NM_001042492.2	1225	atG/atT																																																																														
NF1	4763	MSKCC	GRCh37	17	29586102	29586102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	107	464	0	ENST00000358273.4:c.4385G>A	p.Arg1462Gln	p.R1462Q	ENST00000358273	NM_001042492.2	1462	cGg/cAg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370280	40370280	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143171571		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	265	804	2	ENST00000293328.3:c.1058G>A	p.Arg353His	p.R353H	ENST00000293328	NM_012448.3	353	cGc/cAc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40460196	40460196	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	250	722	1	ENST00000345506.4:c.1907C>T	p.Pro636Leu	p.P636L	ENST00000345506	NM_003152.3	636	cCg/cTg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40481655	40481655	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	339	809	1	ENST00000264657.5:c.1150T>G	p.Phe384Val	p.F384V	ENST00000264657	NM_139276.2	384	Ttt/Gtt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246754	41246754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	185	583	0	ENST00000357654.3:c.794C>A	p.Ser265Tyr	p.S265Y	ENST00000357654	NM_007294.3	265	tCt/tAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435452	56435452	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	167	500	0	ENST00000407977.2:c.1685T>G	p.Phe562Cys	p.F562C	ENST00000407977		562	tTc/tGc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533932	63533932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	116	308	0	ENST00000307078.5:c.1222G>A	p.Glu408Lys	p.E408K	ENST00000307078	NM_004655.3	408	Gag/Aag																																																																														
YES1	7525	MSKCC	GRCh37	18	743329	743329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	201	635	1	ENST00000314574.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000314574	NM_005433.3	271	Gaa/Aaa																																																																														
YES1	7525	MSKCC	GRCh37	18	745711	745711	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	136	438	0	ENST00000314574.4:c.721A>G	p.Thr241Ala	p.T241A	ENST00000314574	NM_005433.3	241	Aca/Gca																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39575929	39575929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	108	503	0	ENST00000262039.4:c.862C>T	p.Pro288Ser	p.P288S	ENST00000262039	NM_002647.2	288	Ccc/Tcc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45391501	45391501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	113	458	0	ENST00000262160.6:c.659C>T	p.Thr220Met	p.T220M	ENST00000262160	NM_005901.5	220	aCg/aTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573650	48573650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	79	261	1	ENST00000342988.3:c.234G>T	p.Leu78Phe	p.L78F	ENST00000342988	NM_005359.5	78	ttG/ttT																																																																														
MALT1	10892	MSKCC	GRCh37	18	56412904	56412904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	189	545	1	ENST00000348428.3:c.1918G>T	p.Asp640Tyr	p.D640Y	ENST00000348428	NM_006785.3	640	Gat/Tat																																																																														
MALT1	10892	MSKCC	GRCh37	18	56414797	56414797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	301	807	0	ENST00000348428.3:c.2198C>T	p.Ser733Phe	p.S733F	ENST00000348428	NM_006785.3	733	tCt/tTt																																																																														
BCL2	596	MSKCC	GRCh37	18	60795873	60795873	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	221	518	0	ENST00000333681.4:c.705T>G	p.Tyr235Ter	p.Y235*	ENST00000333681		235	taT/taG																																																																														
TCF3	6929	MSKCC	GRCh37	19	1632366	1632366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202212254		P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	274	590	0	ENST00000344749.5:c.184G>A	p.Gly62Ser	p.G62S	ENST00000344749	NM_001136139.2	62	Ggc/Agc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222493	2222493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	108	273	0	ENST00000398665.3:c.3325G>T	p.Ala1109Ser	p.A1109S	ENST00000398665	NM_032482.2	1109	Gcc/Tcc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226775	2226775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	166	430	0	ENST00000398665.3:c.4255G>A	p.Asp1419Asn	p.D1419N	ENST00000398665	NM_032482.2	1419	Gac/Aac																																																																														
GNA11	2767	MSKCC	GRCh37	19	3094690	3094690	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	82	336	0	ENST00000078429.4:c.41A>C	p.Glu14Ala	p.E14A	ENST00000078429	NM_002067.2	14	gAg/gCg																																																																														
INSR	3643	MSKCC	GRCh37	19	7142931	7142931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	269	556	2	ENST00000302850.5:c.2438G>A	p.Arg813Gln	p.R813Q	ENST00000302850	NM_000208.2	813	cGa/cAa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291166	10291166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	247	714	0	ENST00000340748.4:c.305A>G	p.Glu102Gly	p.E102G	ENST00000340748		102	gAa/gGa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11107179	11107179	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	225	502	1	ENST00000344626.4:c.1771A>C	p.Asn591His	p.N591H	ENST00000344626	NM_003072.3	591	Aat/Cat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132552	11132552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	228	649	0	ENST00000344626.4:c.2768C>T	p.Ala923Val	p.A923V	ENST00000344626	NM_003072.3	923	gCg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132617	11132617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	248	560	3	ENST00000344626.4:c.2833G>A	p.Ala945Thr	p.A945T	ENST00000344626	NM_003072.3	945	Gca/Aca																																																																														
CALR	811	MSKCC	GRCh37	19	13054624	13054624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	344	758	0	ENST00000316448.5:c.1151A>G	p.Asp384Gly	p.D384G	ENST00000316448	NM_004343.3	384	gAc/gGc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298770	15298770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	192	454	0	ENST00000263388.2:c.1528G>A	p.Glu510Lys	p.E510K	ENST00000263388	NM_000435.2	510	Gaa/Aaa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955206	17955206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	200	439	0	ENST00000458235.1:c.21G>T	p.Glu7Asp	p.E7D	ENST00000458235	NM_000215.3	7	gaG/gaT																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260201	19260201	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	191	471	0	ENST00000162023.5:c.92A>C	p.Lys31Thr	p.K31T	ENST00000162023		31	aAg/aCg																																																																														
AXL	558	MSKCC	GRCh37	19	41736905	41736905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	215	582	0	ENST00000301178.4:c.620C>T	p.Ala207Val	p.A207V	ENST00000301178	NM_021913.4	207	gCc/gTc																																																																														
AXL	558	MSKCC	GRCh37	19	41754717	41754717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	203	570	1	ENST00000301178.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000301178	NM_021913.4	568	aCg/aTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42793550	42793550	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	215	458	0	ENST00000575354.2:c.1352A>C	p.Asp451Ala	p.D451A	ENST00000575354	NM_015125.3	451	gAt/gCt																																																																														
CIC	23152	MSKCC	GRCh37	19	42794015	42794015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	237	558	0	ENST00000575354.2:c.1376G>A	p.Gly459Asp	p.G459D	ENST00000575354	NM_015125.3	459	gGc/gAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42796574	42796574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	159	366	0	ENST00000575354.2:c.3131C>T	p.Ser1044Leu	p.S1044L	ENST00000575354	NM_015125.3	1044	tCg/tTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860924	45860924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	223	546	0	ENST00000391945.4:c.1271G>T	p.Arg424Ile	p.R424I	ENST00000391945	NM_000400.3	424	aGa/aTa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906366	50906366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	226	622	2	ENST00000440232.2:c.1027C>T	p.Arg343Cys	p.R343C	ENST00000440232	NM_002691.3	343	Cgc/Tgc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716335	52716335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	200	485	0	ENST00000322088.6:c.779G>A	p.Arg260His	p.R260H	ENST00000322088	NM_014225.5	260	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52729023	52729023	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	231	488	0	ENST00000322088.6:c.1715A>G	p.Asp572Gly	p.D572G	ENST00000322088	NM_014225.5	572	gAt/gGt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019139	31019139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	263	577	0	ENST00000375687.4:c.734A>G	p.Asn245Ser	p.N245S	ENST00000375687	NM_015338.5	245	aAc/aGc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022418	31022418	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	114	300	0	ENST00000375687.4:c.1903G>T	p.Glu635Ter	p.E635*	ENST00000375687	NM_015338.5	635	Gag/Tag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31025100	31025100	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	184	383	0	ENST00000375687.4:c.4585G>T	p.Gly1529Ter	p.G1529*	ENST00000375687	NM_015338.5	1529	Gga/Tga																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31389213	31389213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	199	353	0	ENST00000328111.2:c.2126A>G	p.Asp709Gly	p.D709G	ENST00000328111	NM_006892.3	709	gAc/gGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944415	40944415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	193	551	0	ENST00000373198.4:c.2087C>A	p.Ser696Tyr	p.S696Y	ENST00000373198	NM_133170.3	696	tCt/tAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306602	41306602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	244	556	0	ENST00000373198.4:c.1057G>A	p.Asp353Asn	p.D353N	ENST00000373198	NM_133170.3	353	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514513	41514513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	218	613	0	ENST00000373198.4:c.148A>G	p.Asn50Asp	p.N50D	ENST00000373198	NM_133170.3	50	Aat/Gat																																																																														
AURKA	6790	MSKCC	GRCh37	20	54963246	54963246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	219	509	1	ENST00000312783.6:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000312783	NM_198436.1	3	cGa/cAa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484406	57484406	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	237	603	0	ENST00000371085.3:c.587A>G	p.Asp196Gly	p.D196G	ENST00000371085	NM_000516.4	196	gAc/gGc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164440	36164440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	57	103	0	ENST00000300305.3:c.1435C>T	p.Pro479Ser	p.P479S	ENST00000300305		479	Ccc/Tcc																																																																														
CRKL	1399	MSKCC	GRCh37	22	21304014	21304014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	212	530	0	ENST00000354336.3:c.793A>G	p.Lys265Glu	p.K265E	ENST00000354336	NM_005207.3	265	Aaa/Gaa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29092906	29092906	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	236	709	0	ENST00000328354.6:c.1078G>T	p.Glu360Ter	p.E360*	ENST00000328354	NM_007194.3	360	Gag/Tag																																																																														
NF2	4771	MSKCC	GRCh37	22	30090776	30090776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	260	593	0	ENST00000338641.4:c.1773C>A	p.Phe591Leu	p.F591L	ENST00000338641	NM_000268.3	591	ttC/ttA																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317422	1317422	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	243	540	0				ENST00000381566																																																																																	
ZRSR2	8233	MSKCC	GRCh37	X	15827398	15827398	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	181	461	0	ENST00000307771.7:c.514T>A	p.Cys172Ser	p.C172S	ENST00000307771	NM_005089.3	172	Tgt/Agt																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841040	15841040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	302	863	0	ENST00000307771.7:c.1124G>T	p.Ser375Ile	p.S375I	ENST00000307771	NM_005089.3	375	aGc/aTc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841178	15841178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	195	602	0	ENST00000307771.7:c.1262G>A	p.Arg421Gln	p.R421Q	ENST00000307771	NM_005089.3	421	cGa/cAa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923726	39923726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	301	673	0	ENST00000378444.4:c.3365C>T	p.Ser1122Leu	p.S1122L	ENST00000378444	NM_001123385.1	1122	tCg/tTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932139	39932139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	267	620	0	ENST00000378444.4:c.2460C>A	p.Asn820Lys	p.N820K	ENST00000378444	NM_001123385.1	820	aaC/aaA																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933673	39933673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	186	583	0	ENST00000378444.4:c.926A>G	p.Asn309Ser	p.N309S	ENST00000378444	NM_001123385.1	309	aAc/aGc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39937104	39937104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	222	593	2	ENST00000378444.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000378444	NM_001123385.1	27	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938548	44938548	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	190	627	0	ENST00000377967.4:c.3096T>G	p.Ile1032Met	p.I1032M	ENST00000377967	NM_021140.2	1032	atT/atG																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942809	44942809	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	244	814	0	ENST00000377967.4:c.3389A>G	p.Asn1130Ser	p.N1130S	ENST00000377967	NM_021140.2	1130	aAc/aGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038745	47038745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	161	374	0	ENST00000329236.7:c.521C>T	p.Thr174Met	p.T174M	ENST00000329236	NM_001204466.1	174	aCg/aTg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53241016	53241016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	312	759	1	ENST00000375401.3:c.1195G>A	p.Glu399Lys	p.E399K	ENST00000375401	NM_004187.3	399	Gag/Aag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246390	53246390	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	307	681	1	ENST00000375401.3:c.592C>T	p.Arg198Ter	p.R198*	ENST00000375401	NM_004187.3	198	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409914	63409914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	277	686	1	ENST00000330258.3:c.3253C>A	p.Pro1085Thr	p.P1085T	ENST00000330258	NM_152424.3	1085	Cct/Act																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410481	63410481	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	280	633	0	ENST00000330258.3:c.2686C>A	p.Leu896Ile	p.L896I	ENST00000330258	NM_152424.3	896	Ctc/Atc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411603	63411603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	271	732	0	ENST00000330258.3:c.1564G>T	p.Asp522Tyr	p.D522Y	ENST00000330258	NM_152424.3	522	Gat/Tat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411759	63411759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	278	728	0	ENST00000330258.3:c.1408G>T	p.Gly470Cys	p.G470C	ENST00000330258	NM_152424.3	470	Ggt/Tgt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412430	63412430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	293	814	0	ENST00000330258.3:c.737C>T	p.Ser246Phe	p.S246F	ENST00000330258	NM_152424.3	246	tCt/tTt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412964	63412964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	275	758	0	ENST00000330258.3:c.203C>A	p.Thr68Asn	p.T68N	ENST00000330258	NM_152424.3	68	aCt/aAt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413051	63413051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	318	784	1	ENST00000330258.3:c.116G>A	p.Gly39Glu	p.G39E	ENST00000330258	NM_152424.3	39	gGa/gAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70345972	70345972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	271	750	0	ENST00000374080.3:c.2509T>C	p.Ser837Pro	p.S837P	ENST00000374080		837	Tca/Cca																																																																														
MED12	9968	MSKCC	GRCh37	X	70357481	70357481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	230	659	0	ENST00000374080.3:c.5822C>T	p.Ser1941Phe	p.S1941F	ENST00000374080		1941	tCc/tTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70360668	70360668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	56	126	0	ENST00000374080.3:c.6228G>T	p.Gln2076His	p.Q2076H	ENST00000374080		2076	caG/caT																																																																														
ATRX	546	MSKCC	GRCh37	X	76855205	76855205	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	166	749	0	ENST00000373344.5:c.5782A>G	p.Thr1928Ala	p.T1928A	ENST00000373344	NM_000489.3	1928	Aca/Gca																																																																														
ATRX	546	MSKCC	GRCh37	X	76888698	76888698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	127	609	0	ENST00000373344.5:c.5131C>A	p.Pro1711Thr	p.P1711T	ENST00000373344	NM_000489.3	1711	Cca/Aca																																																																														
ATRX	546	MSKCC	GRCh37	X	76937828	76937828	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	145	803	0	ENST00000373344.5:c.2920A>G	p.Ser974Gly	p.S974G	ENST00000373344	NM_000489.3	974	Agc/Ggc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937891	76937891	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	127	618	0	ENST00000373344.5:c.2857A>G	p.Thr953Ala	p.T953A	ENST00000373344	NM_000489.3	953	Aca/Gca																																																																														
ATRX	546	MSKCC	GRCh37	X	76938330	76938330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	137	663	1	ENST00000373344.5:c.2418G>T	p.Lys806Asn	p.K806N	ENST00000373344	NM_000489.3	806	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76938710	76938710	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	122	698	0	ENST00000373344.5:c.2038G>T	p.Glu680Ter	p.E680*	ENST00000373344	NM_000489.3	680	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76954080	76954080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	174	768	0	ENST00000373344.5:c.171G>A	p.Met57Ile	p.M57I	ENST00000373344	NM_000489.3	57	atG/atA																																																																														
STAG2	10735	MSKCC	GRCh37	X	123156522	123156522	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	193	663	0	ENST00000218089.9:c.44+1G>T		p.X15_splice	ENST00000218089	NM_001042749.1	15																																																																															
STAG2	10735	MSKCC	GRCh37	X	123179058	123179058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	127	697	0	ENST00000218089.9:c.507G>T	p.Lys169Asn	p.K169N	ENST00000218089	NM_001042749.1	169	aaG/aaT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195187	123195187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	147	560	0	ENST00000218089.9:c.1530G>T	p.Glu510Asp	p.E510D	ENST00000218089	NM_001042749.1	510	gaG/gaT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195719	123195719	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	152	656	0	ENST00000218089.9:c.1633A>C	p.Lys545Gln	p.K545Q	ENST00000218089	NM_001042749.1	545	Aaa/Caa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123210314	123210314	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	153	521	0	ENST00000218089.9:c.2666A>G	p.Tyr889Cys	p.Y889C	ENST00000218089	NM_001042749.1	889	tAt/tGt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217381	123217381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	204	613	0	ENST00000218089.9:c.3035G>A	p.Arg1012Gln	p.R1012Q	ENST00000218089	NM_001042749.1	1012	cGa/cAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224443	123224443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	248	684	5	ENST00000218089.9:c.3296G>T	p.Ser1099Ile	p.S1099I	ENST00000218089	NM_001042749.1	1099	aGt/aTt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123229241	123229241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	270	629	0	ENST00000218089.9:c.3725G>A	p.Arg1242Gln	p.R1242Q	ENST00000218089	NM_001042749.1	1242	cGa/cAa																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480521	123480521	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	210	485	0	ENST00000371139.4:c.29A>C	p.Lys10Thr	p.K10T	ENST00000371139	NM_001114937.2	10	aAa/aCa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771860	135771861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	247	598	0	ENST00000298552.3:c.3256dup	p.Ser1086LysfsTer13	p.S1086Kfs*13	ENST00000298552	NM_001162426.1	1086	agc/aAgc																																																																														
TET2	54790	MSKCC	GRCh37	4	106158364	106158365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	229	610	0	ENST00000380013.4:c.3269dup	p.Thr1091AspfsTer13	p.T1091Dfs*13	ENST00000380013	NM_001127208.2	1089	gaa/gAaa																																																																														
STK11	6794	MSKCC	GRCh37	19	1218483	1218486	+	stop_gained	Nonsense_Mutation	ONP	GAAG	GAAG	AAAT			P-0004379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	189	511	0	ENST00000326873.7:c.358_361delinsAAAT	p.Glu120_Glu121delinsLysTer	p.E120_E121delinsK*	ENST00000326873	NM_000455.4	120	GAAGag/AAATag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	138	105	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0004404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	203	407	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446429	49446432	+	frameshift_variant	Frame_Shift_Del	DEL	GCAT	GCAT	-			P-0004404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	257	286	0	ENST00000301067.7:c.1173_1176del	p.Cys392LysfsTer9	p.C392Kfs*9	ENST00000301067	NM_003482.3	391	gcATGC/gc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	40	76	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0004419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	41	183	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	89	298	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198262733	198262733	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	73	218	0	ENST00000335508.6:c.3242T>C	p.Phe1081Ser	p.F1081S	ENST00000335508	NM_012433.2	1081	tTt/tCt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295674	212295674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	59	284	0	ENST00000342788.4:c.2639G>A	p.Gly880Glu	p.G880E	ENST00000342788	NM_005235.2	880	gGa/gAa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682361	52682361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	76	267	0	ENST00000394830.3:c.812A>G	p.Lys271Arg	p.K271R	ENST00000394830	NM_018313.4	271	aAg/aGg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138384011	138384011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	93	308	2	ENST00000289153.2:c.2539C>T	p.Arg847Cys	p.R847C	ENST00000289153	NM_006219.2	847	Cgc/Tgc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955063	55955063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	92	285	0	ENST00000263923.4:c.3482G>A	p.Gly1161Glu	p.G1161E	ENST00000263923	NM_002253.2	1161	gGa/gAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217214	66217214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	80	318	0	ENST00000273854.3:c.2401C>T	p.Leu801Phe	p.L801F	ENST00000273854	NM_004439.5	801	Ctt/Ttt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	13	126	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295254	1295254	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	12	138	0				ENST00000310581	NM_198253.2																																																																																
MDC1	9656	MSKCC	GRCh37	6	30671931	30671931	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	48	285	0	ENST00000376406.3:c.5029C>T	p.Gln1677Ter	p.Q1677*	ENST00000376406	NM_014641.2	1677	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692891	89692891	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	37	119	0	ENST00000371953.3:c.375A>C	p.Lys125Asn	p.K125N	ENST00000371953	NM_000314.4	125	aaA/aaC																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248601	8248601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	36	263	0	ENST00000335790.3:c.286C>T	p.Pro96Ser	p.P96S	ENST00000335790	NM_002315.2	96	Cca/Tca																																																																														
PGR	5241	MSKCC	GRCh37	11	100998537	100998537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	27	255	0	ENST00000325455.5:c.1265C>T	p.Pro422Leu	p.P422L	ENST00000325455	NM_001202474.3	422	cCg/cTg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527895	103527895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	65	223	1	ENST00000355739.4:c.3203C>T	p.Ser1068Leu	p.S1068L	ENST00000355739	NM_000123.3	1068	tCa/tTa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570311	95570311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	46	186	0	ENST00000343455.3:c.3422C>T	p.Ser1141Phe	p.S1141F	ENST00000343455	NM_177438.2	1141	tCc/tTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624936	9624936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	54	307	0	ENST00000353224.5:c.41C>T	p.Pro14Leu	p.P14L	ENST00000353224	NM_177990.2	14	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	130	710	2	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
TP63	8626	MSKCC	GRCh37	3	189582127	189582127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	99	593	0	ENST00000264731.3:c.686C>A	p.Pro229His	p.P229H	ENST00000264731	NM_003722.4	229	cCt/cAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	10	416	2	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089777	27089777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	23	150	0	ENST00000324856.7:c.2732+1G>T		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120471797	120471797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	113	595	0	ENST00000256646.2:c.3694G>T	p.Gly1232Cys	p.G1232C	ENST00000256646	NM_024408.3	1232	Ggt/Tgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162475	47162475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	115	591	1	ENST00000409792.3:c.3651G>T	p.Trp1217Cys	p.W1217C	ENST00000409792	NM_014159.6	1217	tgG/tgT																																																																														
MITF	4286	MSKCC	GRCh37	3	69987154	69987154	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	38	459	0	ENST00000352241.4:c.536A>T	p.Asn179Ile	p.N179I	ENST00000352241	NM_198159.2	179	aAc/aTc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71064805	71064805	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	52	419	0	ENST00000318789.4:c.870-1G>A		p.X290_splice	ENST00000318789	NM_032682.5	290																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55133830	55133830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	120	560	0	ENST00000257290.5:c.1043C>T	p.Ser348Phe	p.S348F	ENST00000257290	NM_006206.4	348	tCc/tTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149499098	149499098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	40	456	0	ENST00000261799.4:c.2730C>A	p.Asn910Lys	p.N910K	ENST00000261799	NM_002609.3	910	aaC/aaA																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517564	176517564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	39	563	1	ENST00000292408.4:c.265G>T	p.Ala89Ser	p.A89S	ENST00000292408	NM_213647.1	89	Gcc/Tcc																																																																														
IRF4	3662	MSKCC	GRCh37	6	394849	394849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	30	374	0	ENST00000380956.4:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000380956	NM_001195286.1	82	cGa/cAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185804	32185804	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	73	532	1	ENST00000375023.3:c.1592T>A	p.Leu531Gln	p.L531Q	ENST00000375023	NM_004557.3	531	cTg/cAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969077	93969077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	109	802	0	ENST00000369303.4:c.1919G>A	p.Gly640Asp	p.G640D	ENST00000369303	NM_004440.3	640	gGt/gAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979365	93979365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	137	723	2	ENST00000369303.4:c.1463G>T	p.Arg488Leu	p.R488L	ENST00000369303	NM_004440.3	488	cGg/cTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946330	2946330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	95	664	0	ENST00000396946.4:c.3407A>G	p.Lys1136Arg	p.K1136R	ENST00000396946	NM_032415.4	1136	aAg/aGg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739826	41739826	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	173	875	0	ENST00000242208.4:c.147C>G	p.Asn49Lys	p.N49K	ENST00000242208	NM_002192.2	49	aaC/aaG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248995	55248995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	73	433	0	ENST00000275493.2:c.2293G>T	p.Val765Leu	p.V765L	ENST00000275493	NM_005228.3	765	Gtg/Ttg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508361	106508361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	50	139	0	ENST00000359195.3:c.355C>A	p.Leu119Met	p.L119M	ENST00000359195	NM_002649.2	119	Ctg/Atg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507423	8507423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	40	419	0	ENST00000356435.5:c.1555C>A	p.Pro519Thr	p.P519T	ENST00000356435		519	Cca/Aca																																																																														
PGR	5241	MSKCC	GRCh37	11	100998708	100998708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	70	905	0	ENST00000325455.5:c.1094C>A	p.Pro365His	p.P365H	ENST00000325455	NM_001202474.3	365	cCc/cAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	465691	465691	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	30	543	0	ENST00000399788.2:c.685G>C	p.Asp229His	p.D229H	ENST00000399788	NM_001042603.1	229	Gat/Cat																																																																														
KDM5A	5927	MSKCC	GRCh37	12	472265	472265	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	85	417	0	ENST00000399788.2:c.538-2A>T		p.X180_splice	ENST00000399788	NM_001042603.1	180																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432333	49432333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	102	585	0	ENST00000301067.7:c.8806G>A	p.Ala2936Thr	p.A2936T	ENST00000301067	NM_003482.3	2936	Gcc/Acc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582900	95582900	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	75	586	0	ENST00000343455.3:c.1642C>T	p.Gln548Ter	p.Q548*	ENST00000343455	NM_177438.2	548	Caa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	41989148	41989148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	94	871	0	ENST00000219905.7:c.1940G>T	p.Gly647Val	p.G647V	ENST00000219905	NM_001164273.1	647	gGg/gTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119764	70119764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	57	586	0	ENST00000245479.2:c.766G>T	p.Gly256Trp	p.G256W	ENST00000245479	NM_000346.3	256	Ggg/Tgg																																																																														
STK11	6794	MSKCC	GRCh37	19	1223048	1223048	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	81	543	0	ENST00000326873.7:c.985A>T	p.Lys329Ter	p.K329*	ENST00000326873	NM_000455.4	329	Aag/Tag																																																																														
INSR	3643	MSKCC	GRCh37	19	7126655	7126655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	32	422	0	ENST00000302850.5:c.2953G>T	p.Asp985Tyr	p.D985Y	ENST00000302850	NM_000208.2	985	Gat/Tat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039347	47039347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	83	442	1	ENST00000329236.7:c.739G>T	p.Ala247Ser	p.A247S	ENST00000329236	NM_001204466.1	247	Gcg/Tcg																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504136	123504136	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	50	272	0	ENST00000371139.4:c.312del	p.Lys105SerfsTer13	p.K105Sfs*13	ENST00000371139	NM_001114937.2	104	aaG/aa																																																																														
ALK	238	MSKCC	GRCh37	2	29519850	29519851	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	62	608	0	ENST00000389048.3:c.1720_1721delinsAT	p.Gly574Met	p.G574M	ENST00000389048	NM_004304.4	574	GGg/ATg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661835	227661836	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	31	278	0	ENST00000305123.5:c.1619_1620delinsT	p.Pro540LeufsTer15	p.P540Lfs*15	ENST00000305123	NM_005544.2	540	cCG/cT																																																																														
INSR	3643	MSKCC	GRCh37	19	7128878	7128879	+	stop_gained	Nonsense_Mutation	DNP	AG	AG	TA			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	30	559	0	ENST00000302850.5:c.2929_2930delinsTA	p.Leu977Ter	p.L977*	ENST00000302850	NM_000208.2	977	CTa/TAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231413	46231413	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	GGTGCTAT			P-0004442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	92	461	0	ENST00000334344.6:c.1253delinsGGTGCTAT	p.Thr418ArgfsTer45	p.T418Rfs*45	ENST00000334344	NM_152641.2	418	aCa/aGGTGCTATa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645693	12645693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	259	357	0	ENST00000251849.4:c.776C>T	p.Ser259Phe	p.S259F	ENST00000251849	NM_002880.3	259	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	318	559	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55972949	55972949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	284	486	0	ENST00000263923.4:c.1441C>T	p.Pro481Ser	p.P481S	ENST00000263923	NM_002253.2	481	Cct/Tct																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741760	145741760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	254	418	0	ENST00000428558.2:c.743G>A	p.Arg248His	p.R248H	ENST00000428558	NM_004260.3	248	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	103	158	0				ENST00000310581	NM_198253.2																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50450324	50450324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	250	413	0	ENST00000331340.3:c.508G>A	p.Glu170Lys	p.E170K	ENST00000331340	NM_006060.4	170	Gag/Aag																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935438	36935438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	326	601	0	ENST00000361632.4:c.1289C>T	p.Pro430Leu	p.P430L	ENST00000361632		430	cCa/cTa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	329	426	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
ALK	238	MSKCC	GRCh37	2	30142996	30142996	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	326	463	0	ENST00000389048.3:c.530G>A	p.Trp177Ter	p.W177*	ENST00000389048	NM_004304.4	177	tGg/tAg																																																																														
INHA	3623	MSKCC	GRCh37	2	220439964	220439964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	366	694	0	ENST00000243786.2:c.817G>A	p.Glu273Lys	p.E273K	ENST00000243786	NM_002191.3	273	Gag/Aag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37050356	37050356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	271	506	0	ENST00000231790.2:c.505C>T	p.Pro169Ser	p.P169S	ENST00000231790	NM_000249.3	169	Cca/Tca																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437704	52437704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	340	626	0	ENST00000460680.1:c.1457C>T	p.Pro486Leu	p.P486L	ENST00000460680	NM_004656.3	486	cCc/cTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528644	89528644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147992008		P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	273	302	0	ENST00000336596.2:c.2944C>T	p.Pro982Ser	p.P982S	ENST00000336596	NM_005233.5	982	Ccc/Tcc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143044547	143044547	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	269	433	0	ENST00000262992.4:c.1915T>C	p.Phe639Leu	p.F639L	ENST00000262992	NM_001101669.1	639	Ttt/Ctt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541302	187541302	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	334	583	0	ENST00000441802.2:c.6438A>T	p.Leu2146Phe	p.L2146F	ENST00000441802	NM_005245.3	2146	ttA/ttT																																																																														
TERT	7015	MSKCC	GRCh37	5	1294766	1294766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			35	23	35	0	ENST00000310581.5:c.235G>A	p.Glu79Lys	p.E79K	ENST00000310581	NM_198253.2	79	Gag/Aag																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056167	26056167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	289	382	0	ENST00000343677.2:c.490G>A	p.Ala164Thr	p.A164T	ENST00000343677	NM_005319.3	164	Gcc/Acc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099762	157099762	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	138	194	0	ENST00000346085.5:c.699C>G	p.Tyr233Ter	p.Y233*	ENST00000346085	NM_020732.3	233	taC/taG																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367317	50367317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	273	295	0	ENST00000331340.3:c.124G>A	p.Gly42Arg	p.G42R	ENST00000331340	NM_006060.4	42	Gga/Aga																																																																														
MET	4233	MSKCC	GRCh37	7	116339856	116339856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	353	489	0	ENST00000397752.3:c.718G>A	p.Glu240Lys	p.E240K	ENST00000397752	NM_000245.2	240	Gag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116340007	116340007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	333	342	0	ENST00000397752.3:c.869C>T	p.Ser290Phe	p.S290F	ENST00000397752	NM_000245.2	290	tCc/tTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453125	140453125	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	239	400	0	ENST00000288602.6:c.1810T>G	p.Trp604Gly	p.W604G	ENST00000288602	NM_004333.4	604	Tgg/Ggg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879469	151879469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	257	404	0	ENST00000262189.6:c.5476C>T	p.His1826Tyr	p.H1826Y	ENST00000262189	NM_170606.2	1826	Cat/Tat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5050778	5050778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	277	395	0	ENST00000381652.3:c.561G>A	p.Met187Ile	p.M187I	ENST00000381652	NM_004972.3	187	atG/atA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390650	139390650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	276	462	0	ENST00000277541.6:c.7541C>T	p.Pro2514Leu	p.P2514L	ENST00000277541	NM_017617.3	2514	cCt/cTt																																																																														
ETV6	2120	MSKCC	GRCh37	12	12043937	12043937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	296	366	0	ENST00000396373.4:c.1316C>T	p.Ser439Phe	p.S439F	ENST00000396373	NM_001987.4	439	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435673	18435673	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	147	271	0	ENST00000266497.5:c.658A>T	p.Thr220Ser	p.T220S	ENST00000266497		220	Aca/Tca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793468	18793468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	245	490	0	ENST00000266497.5:c.4165G>A	p.Asp1389Asn	p.D1389N	ENST00000266497		1389	Gac/Aac																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856364	111856364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	56	78	0	ENST00000341259.2:c.415C>T	p.Arg139Cys	p.R139C	ENST00000341259	NM_005475.2	139	Cgc/Tgc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608264	28608264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	630	574	0	ENST00000241453.7:c.1792G>A	p.Glu598Lys	p.E598K	ENST00000241453	NM_004119.2	598	Gaa/Aaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28610098	28610098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	316	497	0	ENST00000241453.7:c.1392G>A	p.Trp464Ter	p.W464*	ENST00000241453	NM_004119.2	464	tgG/tgA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95578533	95578533	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	271	522	0	ENST00000343455.3:c.2092T>G	p.Cys698Gly	p.C698G	ENST00000343455	NM_177438.2	698	Tgc/Ggc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020582	14020582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	238	449	0	ENST00000311895.7:c.553C>T	p.Leu185Phe	p.L185F	ENST00000311895	NM_005236.2	185	Ctt/Ttt																																																																														
CDH1	999	MSKCC	GRCh37	16	68855909	68855909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	248	405	0	ENST00000261769.5:c.1717C>T	p.Pro573Ser	p.P573S	ENST00000261769	NM_004360.3	573	Cca/Tca																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348929	89348929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	320	709	0	ENST00000301030.4:c.4021C>T	p.Pro1341Ser	p.P1341S	ENST00000301030	NM_001256183.1	1341	Cct/Tct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436175	56436175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	388	372	1	ENST00000407977.2:c.962C>T	p.Ser321Leu	p.S321L	ENST00000407977		321	tCa/tTa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554645	63554645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	193	227	0	ENST00000307078.5:c.94G>A	p.Glu32Lys	p.E32K	ENST00000307078	NM_004655.3	32	Gag/Aag																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78857768	78857768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	164	319	0	ENST00000306801.3:c.1838C>T	p.Pro613Leu	p.P613L	ENST00000306801	NM_020761.2	613	cCc/cTc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395781	45395781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	183	368	0	ENST00000262160.6:c.353C>T	p.Ser118Phe	p.S118F	ENST00000262160	NM_005901.5	118	tCc/tTc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42842607	42842607	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	288	472	0	ENST00000398585.3:c.1250G>A	p.Trp417Ter	p.W417*	ENST00000398585	NM_001135099.1	417	tGg/tAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	20	179	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	80	541	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557629	95557629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	85	562	2	ENST00000343455.3:c.5438A>G	p.Glu1813Gly	p.E1813G	ENST00000343455	NM_177438.2	1813	gAg/gGg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	49	369	0	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642495	117642495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs9489124		P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	103	851	0	ENST00000368508.3:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000368508	NM_002944.2	1902	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965706	93965706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	108	807	0	ENST00000369303.4:c.2222G>A	p.Gly741Glu	p.G741E	ENST00000369303	NM_004440.3	741	gGa/gAa																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46509388	46509388	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	78	511	0	ENST00000262741.5:c.1343T>C	p.Leu448Pro	p.L448P	ENST00000262741	NM_003629.3	448	cTt/cCt																																																																														
ALK	238	MSKCC	GRCh37	2	29443613	29443613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	44	385	0	ENST00000389048.3:c.3604G>A	p.Gly1202Arg	p.G1202R	ENST00000389048	NM_004304.4	1202	Gga/Aga																																																																														
ALK	238	MSKCC	GRCh37	2	29455170	29455170	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	77	472	0	ENST00000389048.3:c.2632G>A	p.Gly878Ser	p.G878S	ENST00000389048	NM_004304.4	878	Ggt/Agt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167794	185167794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	56	563	0	ENST00000265026.3:c.1117C>T	p.Pro373Ser	p.P373S	ENST00000265026	NM_004721.4	373	Cca/Tca																																																																														
BCL6	604	MSKCC	GRCh37	3	187447336	187447336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	46	299	0	ENST00000232014.4:c.857C>T	p.Pro286Leu	p.P286L	ENST00000232014	NM_001130845.1	286	cCc/cTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449577	149449577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	47	453	0	ENST00000286301.3:c.1369G>T	p.Val457Phe	p.V457F	ENST00000286301	NM_005211.3	457	Gtc/Ttc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722087	176722087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	46	345	0	ENST00000439151.2:c.7718C>T	p.Ser2573Phe	p.S2573F	ENST00000439151	NM_022455.4	2573	tCc/tTc																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127920529	127920529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	87	738	1	ENST00000373547.4:c.370G>A	p.Gly124Arg	p.G124R	ENST00000373547	NM_002721.4	124	Gga/Aga																																																																														
TET1	80312	MSKCC	GRCh37	10	70333233	70333233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	70	549	0	ENST00000373644.4:c.1138G>A	p.Gly380Ser	p.G380S	ENST00000373644	NM_030625.2	380	Ggt/Agt																																																																														
ATM	472	MSKCC	GRCh37	11	108124735	108124735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	69	405	0	ENST00000278616.4:c.2093C>T	p.Ser698Leu	p.S698L	ENST00000278616	NM_000051.3	698	tCa/tTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344107	118344107	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	55	342	0	ENST00000534358.1:c.2233C>T	p.Arg745Ter	p.R745*	ENST00000534358	NM_005933.3	745	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445991	49445991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	58	434	0	ENST00000301067.7:c.1475C>T	p.Ser492Leu	p.S492L	ENST00000301067	NM_003482.3	492	tCg/tTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28891705	28891705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	54	595	0	ENST00000282397.4:c.3316G>A	p.Asp1106Asn	p.D1106N	ENST00000282397	NM_002019.4	1106	Gat/Aat																																																																														
NF1	4763	MSKCC	GRCh37	17	29553573	29553573	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	46	224	0	ENST00000358273.4:c.2122T>G	p.Ser708Ala	p.S708A	ENST00000358273	NM_001042492.2	708	Tcc/Gcc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561396	9561396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	38	321	0	ENST00000353224.5:c.386C>T	p.Ser129Phe	p.S129F	ENST00000353224	NM_177990.2	129	tCc/tTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024546	31024546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	40	392	0	ENST00000375687.4:c.4031C>T	p.Ser1344Phe	p.S1344F	ENST00000375687	NM_015338.5	1344	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770581	40770581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	47	404	0	ENST00000373198.4:c.2801A>G	p.Lys934Arg	p.K934R	ENST00000373198	NM_133170.3	934	aAg/aGg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939417	76939417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	84	751	0	ENST00000373344.5:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000373344	NM_000489.3	444	cGa/cAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266122	41266136	+	inframe_deletion	In_Frame_Del	DEL	CTACCACAGCTCCTT	CTACCACAGCTCCTT	-			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	91	463	0	ENST00000349496.5:c.121_135delACCACAGCTCCTTCT	p.Thr41_Ser45del	p.T41_S45del	ENST00000349496	NM_001904.3	40	aCTACCACAGCTCCTTct/act																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55131094	55131095	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0004518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	59	459	0	ENST00000257290.5:c.637_638delinsAT	p.Glu213Met	p.E213M	ENST00000257290	NM_006206.4	213	GAg/ATg																																																																														
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	595	543	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965415	25965415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	229	391	1	ENST00000435504.4:c.3791A>G	p.Asp1264Gly	p.D1264G	ENST00000435504		1264	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112174529	112174529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	211	332	0	ENST00000257430.4:c.3238G>T	p.Glu1080Ter	p.E1080*	ENST00000257430	NM_000038.5	1080	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971105	21971105	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	133	174	0	ENST00000304494.5:c.253G>C	p.Ala85Pro	p.A85P	ENST00000304494	NM_000077.4	85	Gct/Cct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971105	21971105	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	133	174	0	ENST00000304494.5:c.253G>C	p.Ala85Pro	p.A85P	ENST00000304494	NM_000077.4	85	Gct/Cct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971105	21971105	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	133	174	0	ENST00000304494.5:c.253G>C	p.Ala85Pro	p.A85P	ENST00000304494	NM_000077.4	85	Gct/Cct																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134434	2134434	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	294	459	0	ENST00000219476.3:c.4211A>C	p.Lys1404Thr	p.K1404T	ENST00000219476	NM_000548.3	1404	aAg/aCg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39629498	39629498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	519	357	0	ENST00000262039.4:c.2192G>A	p.Gly731Glu	p.G731E	ENST00000262039	NM_002647.2	731	gGa/gAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123227945	123227945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	230	225	1	ENST00000218089.9:c.3656T>C	p.Ile1219Thr	p.I1219T	ENST00000218089	NM_001042749.1	1219	aTt/aCt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021808	71021828	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGATTATGACGCACTGCATTC	AGATTATGACGCACTGCATTC	-			P-0004617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	202	349	0	ENST00000318789.4:c.1531-1_1550del		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074183	8074183	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1337	220	680	0	ENST00000377482.5:c.476C>G	p.Ser159Cys	p.S159C	ENST00000377482	NM_018948.3	159	tCt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105761	27105761	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	331	450	0	ENST00000324856.7:c.5372C>A	p.Ser1791Ter	p.S1791*	ENST00000324856	NM_006015.4	1791	tCa/tAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107204	27107204	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			768	270	283	0	ENST00000324856.7:c.6815C>A	p.Ser2272Ter	p.S2272*	ENST00000324856	NM_006015.4	2272	tCa/tAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			775	120	445	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
ATR	545	MSKCC	GRCh37	3	142215252	142215252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			635	394	374	0	ENST00000350721.4:c.5849C>T	p.Ser1950Leu	p.S1950L	ENST00000350721	NM_001184.3	1950	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			253	126	80	0				ENST00000310581	NM_198253.2																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139401246	139401246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1289	423	457	0	ENST00000277541.6:c.3823C>A	p.Pro1275Thr	p.P1275T	ENST00000277541	NM_017617.3	1275	Ccc/Acc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362022	118362022	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			474	172	323	0	ENST00000534358.1:c.4808C>G	p.Ser1603Ter	p.S1603*	ENST00000534358	NM_005933.3	1603	tCa/tGa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431919	49431919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			890	257	308	0	ENST00000301067.7:c.9220G>C	p.Glu3074Gln	p.E3074Q	ENST00000301067	NM_003482.3	3074	Gaa/Caa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432408	49432408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			778	283	264	0	ENST00000301067.7:c.8731G>A	p.Glu2911Lys	p.E2911K	ENST00000301067	NM_003482.3	2911	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432473	49432473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	419	423	1	ENST00000301067.7:c.8666G>A	p.Gly2889Glu	p.G2889E	ENST00000301067	NM_003482.3	2889	gGa/gAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440476	49440476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			941	342	341	0	ENST00000301067.7:c.4334G>C	p.Cys1445Ser	p.C1445S	ENST00000301067	NM_003482.3	1445	tGt/tCt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	324	496	0	ENST00000267101.3:c.273G>A	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atA																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114163	115114163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			996	494	487	0	ENST00000257566.3:c.1054G>A	p.Ala352Thr	p.A352T	ENST00000257566	NM_016569.3	352	Gct/Act																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39620703	39620703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			670	229	392	0	ENST00000262039.4:c.2101C>G	p.Gln701Glu	p.Q701E	ENST00000262039	NM_002647.2	701	Cag/Gag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11101829	11101829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			980	337	460	0	ENST00000344626.4:c.1249C>T	p.Arg417Cys	p.R417C	ENST00000344626	NM_003072.3	417	Cgc/Tgc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52722950	52722950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			905	285	383	0	ENST00000322088.6:c.1135G>A	p.Glu379Lys	p.E379K	ENST00000322088	NM_014225.5	379	Gag/Aag																																																																														
BTK	695	MSKCC	GRCh37	X	100613313	100613313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			811	295	520	0	ENST00000308731.7:c.1087C>G	p.Gln363Glu	p.Q363E	ENST00000308731	NM_000061.2	363	Cag/Gag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651987	36651988	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	348	447	0	ENST00000244741.5:c.110dupT	p.Met38AsnfsTer10	p.M38Nfs*10	ENST00000244741	NM_000389.4	37	cta/cTta																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060774	38060775	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1636	558	610	0	ENST00000250448.2:c.1214dup	p.Met406HisfsTer9	p.M406Hfs*9	ENST00000250448	NM_004496.3	405	ctc/ctTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004622-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			176	89	174	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0004622-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			62	248	218	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25978935	25978935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004622-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			558	299	465	0	ENST00000435504.4:c.988G>A	p.Glu330Lys	p.E330K	ENST00000435504		330	Gaa/Aaa																																																																														
BARD1	580	MSKCC	GRCh37	2	215593651	215593651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004622-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			434	262	395	0	ENST00000260947.4:c.2083G>A	p.Val695Ile	p.V695I	ENST00000260947	NM_000465.2	695	Gtc/Atc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942761	44942761	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004622-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			666	367	557	0	ENST00000377967.4:c.3341C>G	p.Ser1114Ter	p.S1114*	ENST00000377967	NM_021140.2	1114	tCa/tGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106141	27106171	+	frameshift_variant	Frame_Shift_Del	DEL	CGGTCTAGCACCTTGACCGAGGATGGAGCTA	CGGTCTAGCACCTTGACCGAGGATGGAGCTA	-			P-0004622-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			392	268	357	0	ENST00000324856.7:c.5752_5782del	p.Ser1919ValfsTer27	p.S1919Vfs*27	ENST00000324856	NM_006015.4	1918	CGGTCTAGCACCTTGACCGAGGATGGAGCTAag/ag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651963	36651966	+	frameshift_variant	Frame_Shift_Del	DEL	CAGC	CAGC	-			P-0004622-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			302	193	293	0	ENST00000244741.5:c.85_88del	p.Gln29Ter	p.Q29*	ENST00000244741	NM_000389.4	29	CAGCtg/tg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797313	135797313	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004622-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			144	246	335	0	ENST00000298552.3:c.556del	p.Ala186HisfsTer24	p.A186Hfs*24	ENST00000298552	NM_001162426.1	186	Gca/ca																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63829469	63829469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004622-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			403	213	313	1	ENST00000279873.7:c.1112G>A	p.Arg371His	p.R371H	ENST00000279873	NM_032199.2	371	cGc/cAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	113	403	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	51	147	0				ENST00000310581	NM_198253.2																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25469540	25469540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	46	489	0	ENST00000264709.3:c.1228G>T	p.Ala410Ser	p.A410S	ENST00000264709	NM_175629.2	410	Gcc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	113	325	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	47	128	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	100	134	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38982093	38982093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	143	311	0	ENST00000357387.3:c.629C>T	p.Thr210Ile	p.T210I	ENST00000357387	NM_152756.3	210	aCc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	197	461	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444358	49444358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	49	275	0	ENST00000301067.7:c.3013C>T	p.Pro1005Ser	p.P1005S	ENST00000301067	NM_003482.3	1005	Cca/Tca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692841	89692841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	38	139	0	ENST00000371953.3:c.325G>T	p.Asp109Tyr	p.D109Y	ENST00000371953	NM_000314.4	109	Gac/Tac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	37	543	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176105633	176105633	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	49	537	0	ENST00000367669.3:c.882G>C	p.Lys294Asn	p.K294N	ENST00000367669	NM_022457.5	294	aaG/aaC																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259406	89259406	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	81	517	1	ENST00000336596.2:c.550C>T	p.Gln184Ter	p.Q184*	ENST00000336596	NM_005233.5	184	Caa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390213	89390213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	41	391	0	ENST00000336596.2:c.962C>T	p.Ala321Val	p.A321V	ENST00000336596	NM_005233.5	321	gCt/gTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538226	187538226	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	31	512	0	ENST00000441802.2:c.9008T>A	p.Phe3003Tyr	p.F3003Y	ENST00000441802	NM_005245.3	3003	tTc/tAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295321	1295321	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	23	320	0				ENST00000310581	NM_198253.2																																																																																
IRF4	3662	MSKCC	GRCh37	6	394981	394981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	20	268	0	ENST00000380956.4:c.377G>C	p.Arg126Thr	p.R126T	ENST00000380956	NM_001195286.1	126	aGg/aCg																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032045	26032045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	67	718	0	ENST00000244661.2:c.244G>C	p.Asp82His	p.D82H	ENST00000244661	NM_003537.3	82	Gat/Cat																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129208	152129208	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	41	475	0	ENST00000206249.3:c.161A>G	p.Tyr54Cys	p.Y54C	ENST00000206249	NM_000125.3	54	tAc/tGc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575444	64575444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	28	519	0	ENST00000337652.1:c.588G>T	p.Glu196Asp	p.E196D	ENST00000337652	NM_130803.2	196	gaG/gaT																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94180417	94180417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	51	509	0	ENST00000323929.3:c.1751C>T	p.Ser584Leu	p.S584L	ENST00000323929	NM_005591.3	584	tCa/tTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118359450	118359450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	32	459	0	ENST00000534358.1:c.4454G>A	p.Cys1485Tyr	p.C1485Y	ENST00000534358	NM_005933.3	1485	tGt/tAt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402137	402137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	91	634	0	ENST00000399788.2:c.4654G>T	p.Ala1552Ser	p.A1552S	ENST00000399788	NM_001042603.1	1552	Gcc/Tcc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	438026	438026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	74	426	0	ENST00000399788.2:c.1943G>A	p.Arg648Gln	p.R648Q	ENST00000399788	NM_001042603.1	648	cGa/cAa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562826	21562826	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	22	227	0	ENST00000382592.4:c.1093A>T	p.Thr365Ser	p.T365S	ENST00000382592	NM_014572.2	365	Acc/Tcc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240171	41240171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	15	93	0	ENST00000379561.5:c.179C>T	p.Ser60Leu	p.S60L	ENST00000379561	NM_002015.3	60	tCg/tTg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987117	36987117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	63	256	0	ENST00000354822.5:c.572G>C	p.Arg191Pro	p.R191P	ENST00000354822	NM_001079668.2	191	cGc/cCc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473783	67473783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	48	364	0	ENST00000327367.4:c.863G>A	p.Arg288Lys	p.R288K	ENST00000327367	NM_005902.3	288	aGa/aAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576096	88576096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	36	418	1	ENST00000360948.2:c.1577C>A	p.Pro526Gln	p.P526Q	ENST00000360948	NM_001012338.2	526	cCg/cAg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347067	347067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	28	508	0	ENST00000262320.3:c.1944G>C	p.Arg648Ser	p.R648S	ENST00000262320	NM_003502.3	648	agG/agC																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024521	16024521	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	34	514	0	ENST00000268712.3:c.1697A>T	p.Gln566Leu	p.Q566L	ENST00000268712	NM_006311.3	566	cAa/cTa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2180733	2180733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	57	444	0	ENST00000398665.3:c.103C>T	p.His35Tyr	p.H35Y	ENST00000398665	NM_032482.2	35	Cat/Tat																																																																														
INSR	3643	MSKCC	GRCh37	19	7117203	7117203	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	53	500	0	ENST00000302850.5:c.4013A>G	p.Glu1338Gly	p.E1338G	ENST00000302850	NM_000208.2	1338	gAg/gGg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52705255	52705255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	69	488	0	ENST00000322088.6:c.137G>A	p.Arg46Lys	p.R46K	ENST00000322088	NM_014225.5	46	aGg/aAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827958	40827958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	23	385	0	ENST00000373198.4:c.2470G>T	p.Asp824Tyr	p.D824Y	ENST00000373198	NM_133170.3	824	Gac/Tac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980906	40980906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	22	272	0	ENST00000373198.4:c.1580G>T	p.Gly527Val	p.G527V	ENST00000373198	NM_133170.3	527	gGc/gTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755416	39755416	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	22	373	0	ENST00000288319.7:c.1349A>T	p.Asn450Ile	p.N450I	ENST00000288319	NM_182918.3	450	aAc/aTc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1315012	1315012	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	26	394	0				ENST00000381566																																																																																	
ATRX	546	MSKCC	GRCh37	X	76938272	76938272	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	92	558	0	ENST00000373344.5:c.2476A>T	p.Lys826Ter	p.K826*	ENST00000373344	NM_000489.3	826	Aag/Tag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950424	17950438	+	inframe_deletion	In_Frame_Del	DEL	TGGGGCTGCGCCGGA	TGGGGCTGCGCCGGA	-			P-0004687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	26	329	0	ENST00000458235.1:c.1289_1303del	p.Ile430_Pro434del	p.I430_P434del	ENST00000458235	NM_000215.3	430	aTCCGGCGCAGCCCCAca/aca																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783259	9783259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	61	468	0	ENST00000377346.4:c.2503G>A	p.Ala835Thr	p.A835T	ENST00000377346	NM_005026.3	835	Gcc/Acc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784985	9784985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	77	337	0	ENST00000377346.4:c.2988G>T	p.Gln996His	p.Q996H	ENST00000377346	NM_005026.3	996	caG/caT																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190834	11190834	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	49	144	0	ENST00000361445.4:c.5365G>A	p.Ala1789Thr	p.A1789T	ENST00000361445	NM_004958.3	1789	Gcc/Acc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298078	11298078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	41	349	1	ENST00000361445.4:c.2030C>T	p.Ala677Val	p.A677V	ENST00000361445	NM_004958.3	677	gCg/gTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11313967	11313967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	63	608	0	ENST00000361445.4:c.769C>T	p.Arg257Trp	p.R257W	ENST00000361445	NM_004958.3	257	Cgg/Tgg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11318574	11318574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	55	512	1	ENST00000361445.4:c.239C>T	p.Ala80Val	p.A80V	ENST00000361445	NM_004958.3	80	gCc/gTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11318628	11318628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	123	450	1	ENST00000361445.4:c.185G>A	p.Arg62His	p.R62H	ENST00000361445	NM_004958.3	62	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202788	16202788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	50	505	0	ENST00000375759.3:c.496G>A	p.Asp166Asn	p.D166N	ENST00000375759	NM_015001.2	166	Gat/Aat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16203034	16203034	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	116	320	0	ENST00000375759.3:c.742T>C	p.Ser248Pro	p.S248P	ENST00000375759	NM_015001.2	248	Tcc/Ccc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255718	16255718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	85	311	1	ENST00000375759.3:c.2983G>T	p.Ala995Ser	p.A995S	ENST00000375759	NM_015001.2	995	Gca/Tca																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264452	16264452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	49	470	0	ENST00000375759.3:c.10655G>A	p.Arg3552Lys	p.R3552K	ENST00000375759	NM_015001.2	3552	aGg/aAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264470	16264470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	117	412	0	ENST00000375759.3:c.10673C>T	p.Thr3558Met	p.T3558M	ENST00000375759	NM_015001.2	3558	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056166	27056166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	138	395	0	ENST00000324856.7:c.1162G>A	p.Gly388Ser	p.G388S	ENST00000324856	NM_006015.4	388	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	109	393	1	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087877	27087877	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	151	398	0	ENST00000324856.7:c.2164A>G	p.Asn722Asp	p.N722D	ENST00000324856	NM_006015.4	722	Aac/Gac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088672	27088672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	146	518	0	ENST00000324856.7:c.2281C>T	p.Gln761Ter	p.Q761*	ENST00000324856	NM_006015.4	761	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	47	389	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																														
STK40	83931	MSKCC	GRCh37	1	36807378	36807378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	82	377	0	ENST00000373129.3:c.1286C>T	p.Ala429Val	p.A429V	ENST00000373129	NM_032017.1	429	gCg/gTg																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363385	40363385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	112	370	0	ENST00000397332.2:c.844G>A	p.Glu282Lys	p.E282K	ENST00000397332	NM_001033082.2	282	Gaa/Aaa																																																																														
MPL	4352	MSKCC	GRCh37	1	43803903	43803903	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs142565191		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	70	279	0	ENST00000372470.3:c.212+1G>A		p.X71_splice	ENST00000372470	NM_005373.2	71																																																																															
PIK3R3	8503	MSKCC	GRCh37	1	46543206	46543206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	129	552	0	ENST00000262741.5:c.295G>A	p.Asp99Asn	p.D99N	ENST00000262741	NM_003629.3	99	Gat/Aat																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46736354	46736354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	96	471	1	ENST00000371975.4:c.1066C>T	p.His356Tyr	p.H356Y	ENST00000371975	NM_003579.3	356	Cat/Tat																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439637	51439637	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	135	382	1	ENST00000262662.1:c.202C>T	p.Arg68Ter	p.R68*	ENST00000262662		68	Cga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65301830	65301830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	106	421	0	ENST00000342505.4:c.3209C>A	p.Thr1070Asn	p.T1070N	ENST00000342505	NM_002227.2	1070	aCt/aAt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78422373	78422373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	59	237	1	ENST00000370768.2:c.1589C>T	p.Thr530Met	p.T530M	ENST00000370768	NM_003902.3	530	aCg/aTg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115252306	115252306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	157	555	0	ENST00000369535.4:c.334G>A	p.Val112Met	p.V112M	ENST00000369535	NM_002524.4	112	Gtg/Atg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464896	120464896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	89	326	1	ENST00000256646.2:c.5176C>T	p.Arg1726Cys	p.R1726C	ENST00000256646	NM_024408.3	1726	Cgt/Tgt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466595	120466595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	43	390	2	ENST00000256646.2:c.4524C>A	p.Tyr1508Ter	p.Y1508*	ENST00000256646	NM_024408.3	1508	taC/taA																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843623	156843623	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	125	563	0	ENST00000524377.1:c.1049A>G	p.Gln350Arg	p.Q350R	ENST00000524377	NM_002529.3	350	cAg/cGg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849054	156849054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	122	416	0	ENST00000524377.1:c.1946G>A	p.Arg649Gln	p.R649Q	ENST00000524377	NM_002529.3	649	cGg/cAg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162722971	162722971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	151	521	1	ENST00000367921.3:c.169G>A	p.Ala57Thr	p.A57T	ENST00000367921	NM_006182.2	57	Gct/Act																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724990	162724990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	153	519	0	ENST00000367921.3:c.462C>A	p.Asp154Glu	p.D154E	ENST00000367921	NM_006182.2	154	gaC/gaA																																																																														
DDR2	4921	MSKCC	GRCh37	1	162737052	162737052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	154	543	1	ENST00000367921.3:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000367921	NM_006182.2	399	cGg/cAg																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518580	204518580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	108	379	0	ENST00000367182.3:c.1243G>A	p.Asp415Asn	p.D415N	ENST00000367182	NM_001278516.1	415	Gat/Aat																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666635	206666635	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	153	479	0	ENST00000367120.3:c.1969C>T	p.Arg657Ter	p.R657*	ENST00000367120	NM_014002.3	657	Cga/Tga																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612777	228612777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1444	77	840	1	ENST00000366696.1:c.250C>T	p.Arg84Cys	p.R84C	ENST00000366696	NM_003493.2	84	Cgc/Tgc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243859016	243859016	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	47	292	0	ENST00000263826.5:c.49G>T	p.Glu17Ter	p.E17*	ENST00000263826	NM_005465.4	17	Gaa/Taa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469038	25469038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	49	440	0	ENST00000264709.3:c.1420C>T	p.Arg474Cys	p.R474C	ENST00000264709	NM_175629.2	474	Cgc/Tgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469533	25469533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	57	518	0	ENST00000264709.3:c.1235G>A	p.Gly412Glu	p.G412E	ENST00000264709	NM_175629.2	412	gGg/gAg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25973193	25973193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	123	370	0	ENST00000435504.4:c.1232C>T	p.Ser411Phe	p.S411F	ENST00000435504		411	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	29462691	29462691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	46	353	0	ENST00000389048.3:c.2210C>T	p.Ser737Leu	p.S737L	ENST00000389048	NM_004304.4	737	tCg/tTg																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47602435	47602435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	160	476	0	ENST00000263735.4:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000263735	NM_002354.2	163	cGg/cAg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47657061	47657061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	83	358	0	ENST00000233146.2:c.1257G>T	p.Gln419His	p.Q419H	ENST00000233146	NM_000251.2	419	caG/caT																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026962	48026962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	111	464	0	ENST00000234420.5:c.1840T>C	p.Ser614Pro	p.S614P	ENST00000234420	NM_000179.2	614	Tcc/Ccc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027552	48027552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	42	268	1	ENST00000234420.5:c.2430G>T	p.Glu810Asp	p.E810D	ENST00000234420	NM_000179.2	810	gaG/gaT																																																																														
REL	5966	MSKCC	GRCh37	2	61118870	61118870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	99	450	0	ENST00000295025.8:c.63G>A	p.Met21Ile	p.M21I	ENST00000295025	NM_002908.2	21	atG/atA																																																																														
REL	5966	MSKCC	GRCh37	2	61149242	61149242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	120	334	0	ENST00000295025.8:c.1432C>T	p.Pro478Ser	p.P478S	ENST00000295025	NM_002908.2	478	Cca/Tca																																																																														
REL	5966	MSKCC	GRCh37	2	61149251	61149251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	119	326	0	ENST00000295025.8:c.1441G>A	p.Asp481Asn	p.D481N	ENST00000295025	NM_002908.2	481	Gat/Aat																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99163079	99163079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	111	379	0	ENST00000074304.5:c.1085C>T	p.Ala362Val	p.A362V	ENST00000074304	NM_001134224.1	362	gCg/gTg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172124	99172124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	98	381	0	ENST00000074304.5:c.1690C>A	p.Pro564Thr	p.P564T	ENST00000074304	NM_001134224.1	564	Ccc/Acc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182538	99182538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	101	337	0	ENST00000074304.5:c.2341G>A	p.Ala781Thr	p.A781T	ENST00000074304	NM_001134224.1	781	Gcc/Acc																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111921764	111921764	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	123	386	0	ENST00000393256.3:c.553C>T	p.Arg185Ter	p.R185*	ENST00000393256	NM_006538.4	185	Cga/Tga																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111921765	111921765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	147	379	0	ENST00000393256.3:c.554G>A	p.Arg185Gln	p.R185Q	ENST00000393256	NM_006538.4	185	cGa/cAa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044465	128044465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	128	449	1	ENST00000285398.2:c.1156G>A	p.Asp386Asn	p.D386N	ENST00000285398	NM_000122.1	386	Gac/Aac																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046290	128046290	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	62	438	1	ENST00000285398.2:c.973C>T	p.Arg325Ter	p.R325*	ENST00000285398	NM_000122.1	325	Cga/Tga																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047329	128047329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	157	451	0	ENST00000285398.2:c.593G>A	p.Arg198His	p.R198H	ENST00000285398	NM_000122.1	198	cGc/cAc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872812	136872812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1360	79	686	0	ENST00000241393.3:c.686C>T	p.Ser229Phe	p.S229F	ENST00000241393	NM_003467.2	229	tCc/tTc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634770	158634770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	179	660	0	ENST00000263640.3:c.416C>T	p.Ala139Val	p.A139V	ENST00000263640	NM_001105.4	139	gCc/gTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273294	198273294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	83	328	1	ENST00000335508.6:c.916C>T	p.His306Tyr	p.H306Y	ENST00000335508	NM_012433.2	306	Cat/Tat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285173	198285173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	43	420	0	ENST00000335508.6:c.394C>T	p.Arg132Cys	p.R132C	ENST00000335508	NM_012433.2	132	Cgt/Tgt																																																																														
CASP8	841	MSKCC	GRCh37	2	202141631	202141631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	131	450	0	ENST00000358485.4:c.919C>T	p.Arg307Trp	p.R307W	ENST00000358485	NM_001080125.1	307	Cgg/Tgg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735317	204735317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	27	189	0	ENST00000302823.3:c.118G>A	p.Val40Met	p.V40M	ENST00000302823	NM_005214.4	40	Gtg/Atg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989546	212989546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	171	462	0	ENST00000342788.4:c.165C>A	p.Asn55Lys	p.N55K	ENST00000342788	NM_005235.2	55	aaC/aaA																																																																														
CUL3	8452	MSKCC	GRCh37	2	225342921	225342921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	90	485	0	ENST00000264414.4:c.2171C>T	p.Ala724Val	p.A724V	ENST00000264414	NM_003590.4	724	gCg/gTg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422491	225422491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	119	512	0	ENST00000264414.4:c.149G>T	p.Ser50Ile	p.S50I	ENST00000264414	NM_003590.4	50	aGt/aTt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422574	225422574	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	49	261	0	ENST00000264414.4:c.67-1G>T		p.X23_splice	ENST00000264414	NM_003590.4	23																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713834	30713834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	103	348	0	ENST00000359013.4:c.1234G>A	p.Val412Met	p.V412M	ENST00000359013	NM_001024847.2	412	Gtg/Atg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070390	37070390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	66	413	0	ENST00000231790.2:c.1525C>A	p.Leu509Ile	p.L509I	ENST00000231790	NM_000249.3	509	Ctc/Atc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090431	37090431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	124	422	0	ENST00000231790.2:c.2026C>T	p.Leu676Phe	p.L676F	ENST00000231790	NM_000249.3	676	Ctc/Ttc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125211	47125211	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	110	384	0	ENST00000409792.3:c.6059A>G	p.Lys2020Arg	p.K2020R	ENST00000409792	NM_014159.6	2020	aAg/aGg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163010	47163010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	136	544	0	ENST00000409792.3:c.3116C>T	p.Ser1039Phe	p.S1039F	ENST00000409792	NM_014159.6	1039	tCt/tTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164328	47164328	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	61	430	0	ENST00000409792.3:c.1798T>A	p.Leu600Ile	p.L600I	ENST00000409792	NM_014159.6	600	Tta/Ata																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442575	52442575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	96	263	0	ENST00000460680.1:c.170G>A	p.Arg57Gln	p.R57Q	ENST00000460680	NM_004656.3	57	cGg/cAg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52582108	52582108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	75	444	0	ENST00000394830.3:c.4720C>T	p.Arg1574Cys	p.R1574C	ENST00000394830	NM_018313.4	1574	Cgc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52696207	52696207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1223	183	674	1	ENST00000394830.3:c.470C>T	p.Ala157Val	p.A157V	ENST00000394830	NM_018313.4	157	gCa/gTa																																																																														
MITF	4286	MSKCC	GRCh37	3	70008521	70008521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	104	375	0	ENST00000352241.4:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000352241	NM_198159.2	371	Cga/Tga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026105	71026105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	104	399	0	ENST00000318789.4:c.1517C>T	p.Ala506Val	p.A506V	ENST00000318789	NM_032682.5	506	gCg/gTg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71064716	71064716	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	98	338	0	ENST00000318789.4:c.958T>G	p.Phe320Val	p.F320V	ENST00000318789	NM_032682.5	320	Ttc/Gtc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71096170	71096170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	107	341	1	ENST00000318789.4:c.587T>C	p.Leu196Pro	p.L196P	ENST00000318789	NM_032682.5	196	cTc/cCc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71096192	71096192	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	93	334	0	ENST00000318789.4:c.565C>T	p.Gln189Ter	p.Q189*	ENST00000318789	NM_032682.5	189	Cag/Tag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247519	71247519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	92	346	0	ENST00000318789.4:c.14C>A	p.Ser5Tyr	p.S5Y	ENST00000318789	NM_032682.5	5	tCt/tAt																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72861878	72861878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201983708		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	120	460	2	ENST00000325599.8:c.1004G>A	p.Arg335His	p.R335H	ENST00000325599	NM_018130.2	335	cGc/cAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259111	89259111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	79	411	0	ENST00000336596.2:c.255C>A	p.Asn85Lys	p.N85K	ENST00000336596	NM_005233.5	85	aaC/aaA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259184	89259184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	83	356	0	ENST00000336596.2:c.328C>T	p.Pro110Ser	p.P110S	ENST00000336596	NM_005233.5	110	Cca/Tca																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391214	89391214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	32	193	0	ENST00000336596.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000336596	NM_005233.5	427	gCg/gTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499405	89499405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	132	432	0	ENST00000336596.2:c.2575G>A	p.Asp859Asn	p.D859N	ENST00000336596	NM_005233.5	859	Gac/Aac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521666	89521666	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	122	466	0	ENST00000336596.2:c.2743A>G	p.Thr915Ala	p.T915A	ENST00000336596	NM_005233.5	915	Aca/Gca																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880859	134880859	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	58	420	1	ENST00000398015.3:c.1423-1G>T		p.X475_splice	ENST00000398015	NM_004441.4	475																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911520	134911520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756316035		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	42	281	0	ENST00000398015.3:c.1985G>A	p.Arg662His	p.R662H	ENST00000398015	NM_004441.4	662	cGt/cAt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967308	134967308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201143675		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	185	412	0	ENST00000398015.3:c.2647C>T	p.Arg883Trp	p.R883W	ENST00000398015	NM_004441.4	883	Cgg/Tgg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417933	138417933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	104	315	0	ENST00000289153.2:c.1586G>A	p.Arg529Gln	p.R529Q	ENST00000289153	NM_006219.2	529	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	38	701	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921483	178921483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	148	514	1	ENST00000263967.3:c.965C>T	p.Thr322Ile	p.T322I	ENST00000263967	NM_006218.2	322	aCa/aTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951965	178951965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	96	479	0	ENST00000263967.3:c.3020G>A	p.Gly1007Asp	p.G1007D	ENST00000263967	NM_006218.2	1007	gGc/gAc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185183540	185183540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	143	415	0	ENST00000265026.3:c.1394C>T	p.Ala465Val	p.A465V	ENST00000265026	NM_004721.4	465	gCg/gTg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185184657	185184657	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs56408536		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1128	179	605	0	ENST00000265026.3:c.1549C>T	p.Arg517Ter	p.R517*	ENST00000265026	NM_004721.4	517	Cga/Tga																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198306	185198306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	77	248	0	ENST00000265026.3:c.2788C>T	p.Arg930Cys	p.R930C	ENST00000265026	NM_004721.4	930	Cgt/Tgt																																																																														
TP63	8626	MSKCC	GRCh37	3	189586503	189586503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs143591434		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	62	179	0	ENST00000264731.3:c.1127G>A	p.Arg376His	p.R376H	ENST00000264731	NM_003722.4	376	cGc/cAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1795672	1795672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	22	89	0	ENST00000260795.2:c.11C>A	p.Pro4His	p.P4H	ENST00000260795		4	cCt/cAt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803121	1803121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	42	420	1	ENST00000260795.2:c.473G>A	p.Arg158Gln	p.R158Q	ENST00000260795		158	cGg/cAg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	75	248	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	49	477	0	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806228	1806228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	107	381	3	ENST00000260795.2:c.1247G>A	p.Arg416His	p.R416H	ENST00000260795		416	cGc/cAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133759	55133759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	158	622	0	ENST00000257290.5:c.972G>T	p.Leu324Phe	p.L324F	ENST00000257290	NM_006206.4	324	ttG/ttT																																																																														
KIT	3815	MSKCC	GRCh37	4	55594182	55594182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	98	347	0	ENST00000288135.5:c.1885G>A	p.Ala629Thr	p.A629T	ENST00000288135	NM_000222.2	629	Gcc/Acc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213873	66213873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	136	599	0	ENST00000273854.3:c.2557C>T	p.Arg853Ter	p.R853*	ENST00000273854	NM_004439.5	853	Cga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467490	66467490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	196	414	0	ENST00000273854.3:c.779G>A	p.Gly260Asp	p.G260D	ENST00000273854	NM_004439.5	260	gGc/gAc																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84391500	84391500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	20	194	0	ENST00000321945.7:c.332C>T	p.Thr111Met	p.T111M	ENST00000321945	NM_139076.2	111	aCg/aTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106156858	106156858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	151	546	1	ENST00000380013.4:c.1759C>T	p.Pro587Ser	p.P587S	ENST00000380013	NM_001127208.2	587	Cca/Tca																																																																														
TET2	54790	MSKCC	GRCh37	4	106190905	106190905	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	38	237	0	ENST00000380013.4:c.4182+1G>A		p.X1394_splice	ENST00000380013	NM_001127208.2	1394																																																																															
TET2	54790	MSKCC	GRCh37	4	106196648	106196648	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	127	466	0	ENST00000380013.4:c.4981T>G	p.Tyr1661Asp	p.Y1661D	ENST00000380013	NM_001127208.2	1661	Tat/Gat																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045844	143045844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	101	336	0	ENST00000262992.4:c.1790G>A	p.Arg597Gln	p.R597Q	ENST00000262992	NM_001101669.1	597	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	55	306	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187531056	187531056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	121	455	1	ENST00000441802.2:c.9967G>A	p.Val3323Ile	p.V3323I	ENST00000441802	NM_005245.3	3323	Gtt/Att																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532552	187532552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	175	422	0	ENST00000441802.2:c.9841G>T	p.Asp3281Tyr	p.D3281Y	ENST00000441802	NM_005245.3	3281	Gat/Tat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539195	187539195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	140	524	0	ENST00000441802.2:c.8545G>A	p.Asp2849Asn	p.D2849N	ENST00000441802	NM_005245.3	2849	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541475	187541477	+	missense_variant	Missense_Mutation	ONP	CGG	CGG	TGA			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	129	492	0	ENST00000441802.2:c.6263_6265delinsTCA	p.Ala2088_Val2089delinsValIle	p.A2088_V2089delinsVI	ENST00000441802	NM_005245.3	2088	gCCGtt/gTCAtt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549323	187549323	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	126	464	0	ENST00000441802.2:c.4795T>C	p.Tyr1599His	p.Y1599H	ENST00000441802	NM_005245.3	1599	Tac/Cac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549707	187549707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	184	346	0	ENST00000441802.2:c.4534G>A	p.Gly1512Ser	p.G1512S	ENST00000441802	NM_005245.3	1512	Ggc/Agc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187560875	187560875	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	125	422	0	ENST00000441802.2:c.3642+1G>T		p.X1214_splice	ENST00000441802	NM_005245.3	1214																																																																															
FAT1	2195	MSKCC	GRCh37	4	187627774	187627774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	170	536	1	ENST00000441802.2:c.3208C>T	p.Arg1070Ter	p.R1070*	ENST00000441802	NM_005245.3	1070	Cga/Tga																																																																														
SDHA	6389	MSKCC	GRCh37	5	225663	225663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	52	255	0	ENST00000264932.6:c.442G>A	p.Ala148Thr	p.A148T	ENST00000264932	NM_004168.2	148	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1279510	1279510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	46	398	1	ENST00000310581.5:c.2026C>A	p.Leu676Met	p.L676M	ENST00000310581	NM_198253.2	676	Ctg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1294463	1294463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	44	168	0	ENST00000310581.5:c.538G>A	p.Ala180Thr	p.A180T	ENST00000310581	NM_198253.2	180	Gct/Act																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873627	35873627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	126	379	0	ENST00000303115.3:c.583C>A	p.Leu195Ile	p.L195I	ENST00000303115	NM_002185.3	195	Ctc/Atc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38944623	38944623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	69	447	0	ENST00000357387.3:c.4838G>A	p.Arg1613His	p.R1613H	ENST00000357387	NM_152756.3	1613	cGc/cAc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38952450	38952450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	78	388	0	ENST00000357387.3:c.2975C>A	p.Ala992Asp	p.A992D	ENST00000357387	NM_152756.3	992	gCt/gAt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38958911	38958911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	99	269	0	ENST00000357387.3:c.2201A>C	p.Lys734Thr	p.K734T	ENST00000357387	NM_152756.3	734	aAa/aCa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38967451	38967451	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200672374		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	50	420	1	ENST00000357387.3:c.1139G>A	p.Arg380His	p.R380H	ENST00000357387	NM_152756.3	380	cGt/cAt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155603	56155603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	121	332	0	ENST00000399503.3:c.695C>T	p.Ser232Phe	p.S232F	ENST00000399503	NM_005921.1	232	tCt/tTt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56184159	56184159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	96	401	0	ENST00000399503.3:c.4364C>T	p.Ser1455Phe	p.S1455F	ENST00000399503	NM_005921.1	1455	tCc/tTc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750420	57750420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	129	446	0	ENST00000274289.3:c.2048G>T	p.Arg683Ile	p.R683I	ENST00000274289	NM_006622.3	683	aGa/aTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67569243	67569243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	98	362	1	ENST00000274335.5:c.360G>T	p.Glu120Asp	p.E120D	ENST00000274335		120	gaG/gaT																																																																														
RASA1	5921	MSKCC	GRCh37	5	86648982	86648982	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	67	315	0	ENST00000274376.6:c.1262A>G	p.Asp421Gly	p.D421G	ENST00000274376	NM_002890.2	421	gAc/gGc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497347	149497347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140261309		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	90	389	0	ENST00000261799.4:c.2971C>T	p.Arg991Cys	p.R991C	ENST00000261799	NM_002609.3	991	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562478	176562478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	162	535	0	ENST00000439151.2:c.374C>T	p.Ala125Val	p.A125V	ENST00000439151	NM_022455.4	125	gCt/gTt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637762	176637762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	110	469	0	ENST00000439151.2:c.2362C>T	p.Arg788Ter	p.R788*	ENST00000439151	NM_022455.4	788	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675313	176675313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	106	325	0	ENST00000439151.2:c.4629G>T	p.Glu1543Asp	p.E1543D	ENST00000439151	NM_022455.4	1543	gaG/gaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707683	176707683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	135	392	0	ENST00000439151.2:c.5740C>T	p.Arg1914Cys	p.R1914C	ENST00000439151	NM_022455.4	1914	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721049	176721049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	92	352	0	ENST00000439151.2:c.6680C>T	p.Pro2227Leu	p.P2227L	ENST00000439151	NM_022455.4	2227	cCg/cTg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721130	176721130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	101	266	0	ENST00000439151.2:c.6761C>A	p.Pro2254His	p.P2254H	ENST00000439151	NM_022455.4	2254	cCt/cAt																																																																														
IRF4	3662	MSKCC	GRCh37	6	394888	394888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	38	320	0	ENST00000380956.4:c.284C>T	p.Thr95Met	p.T95M	ENST00000380956	NM_001195286.1	95	aCg/aTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672428	30672428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	113	380	0	ENST00000376406.3:c.4532C>T	p.Thr1511Ile	p.T1511I	ENST00000376406	NM_014641.2	1511	aCa/aTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188203	32188203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	113	363	0	ENST00000375023.3:c.1138C>A	p.Leu380Ile	p.L380I	ENST00000375023	NM_004557.3	380	Ctc/Atc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652078	36652078	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45548832		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	121	412	1	ENST00000244741.5:c.200G>A	p.Arg67His	p.R67H	ENST00000244741	NM_000389.4	67	cGt/cAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974378	93974378	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	88	653	1	ENST00000369303.4:c.1676C>A	p.Ala559Asp	p.A559D	ENST00000369303	NM_004440.3	559	gCt/gAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120861	94120861	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	166	670	0	ENST00000369303.4:c.190A>C	p.Asn64His	p.N64H	ENST00000369303	NM_004440.3	64	Aac/Cac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94129031	94129031	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	146	663	0	ENST00000369303.4:c.29G>A	p.Trp10Ter	p.W10*	ENST00000369303	NM_004440.3	10	tGg/tAg																																																																														
FYN	2534	MSKCC	GRCh37	6	111995759	111995759	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	188	643	0	ENST00000368678.4:c.1339T>C	p.Trp447Arg	p.W447R	ENST00000368678		447	Tgg/Cgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708958	117708958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	47	409	0	ENST00000368508.3:c.1999A>G	p.Thr667Ala	p.T667A	ENST00000368508	NM_002944.2	667	Act/Gct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157525060	157525060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	178	520	2	ENST00000346085.5:c.4955C>T	p.Thr1652Met	p.T1652M	ENST00000346085	NM_020732.3	1652	aCg/aTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528608	157528608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	175	368	0	ENST00000346085.5:c.6333C>A	p.Phe2111Leu	p.F2111L	ENST00000346085	NM_020732.3	2111	ttC/ttA																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683697	162683697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	127	454	0	ENST00000366898.1:c.272C>T	p.Ala91Val	p.A91V	ENST00000366898	NM_004562.2	91	gCg/gTg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739938	41739938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	68	620	0	ENST00000242208.4:c.35C>T	p.Ala12Val	p.A12V	ENST00000242208	NM_002192.2	12	gCa/gTa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450315	50450315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	112	419	0	ENST00000331340.3:c.499C>T	p.His167Tyr	p.H167Y	ENST00000331340	NM_006060.4	167	Cat/Tat																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467738	50467738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	119	414	0	ENST00000331340.3:c.973G>A	p.Glu325Lys	p.E325K	ENST00000331340	NM_006060.4	325	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55087046	55087046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	26	209	0	ENST00000275493.2:c.76G>A	p.Glu26Lys	p.E26K	ENST00000275493	NM_005228.3	26	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266502	55266502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	186	441	0	ENST00000275493.2:c.2794C>T	p.Arg932Cys	p.R932C	ENST00000275493	NM_005228.3	932	Cgc/Tgc																																																																														
HGF	3082	MSKCC	GRCh37	7	81335067	81335067	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	42	314	0	ENST00000222390.5:c.1760C>T	p.Pro587Leu	p.P587L	ENST00000222390	NM_000601.4	587	cCt/cTt																																																																														
HGF	3082	MSKCC	GRCh37	7	81359020	81359020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	59	532	0	ENST00000222390.5:c.941G>A	p.Arg314Lys	p.R314K	ENST00000222390	NM_000601.4	314	aGg/aAg																																																																														
HGF	3082	MSKCC	GRCh37	7	81372695	81372695	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	117	489	0	ENST00000222390.5:c.839G>A	p.Trp280Ter	p.W280*	ENST00000222390	NM_000601.4	280	tGg/tAg																																																																														
HGF	3082	MSKCC	GRCh37	7	81392036	81392036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	87	468	0	ENST00000222390.5:c.241C>T	p.Pro81Ser	p.P81S	ENST00000222390	NM_000601.4	81	Cca/Tca																																																																														
HGF	3082	MSKCC	GRCh37	7	81399269	81399269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	82	258	0	ENST00000222390.5:c.19C>A	p.Leu7Met	p.L7M	ENST00000222390	NM_000601.4	7	Ctg/Atg																																																																														
MET	4233	MSKCC	GRCh37	7	116411699	116411699	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	67	336	0	ENST00000397752.3:c.2878C>T	p.Gln960Ter	p.Q960*	ENST00000397752	NM_000245.2	960	Caa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845415	151845415	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	56	408	1	ENST00000262189.6:c.13597C>T	p.Arg4533Ter	p.R4533*	ENST00000262189	NM_170606.2	4533	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151849994	151849994	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	117	311	0	ENST00000262189.6:c.12322C>T	p.Arg4108Ter	p.R4108*	ENST00000262189	NM_170606.2	4108	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875048	151875048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	83	326	0	ENST00000262189.6:c.7490G>A	p.Arg2497His	p.R2497H	ENST00000262189	NM_170606.2	2497	cGc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945085	151945085	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	21	174	0	ENST00000262189.6:c.2434A>G	p.Met812Val	p.M812V	ENST00000262189	NM_170606.2	812	Atg/Gtg																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346419	152346419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	164	658	0	ENST00000359321.1:c.151G>A	p.Gly51Arg	p.G51R	ENST00000359321	NM_005431.1	51	Gga/Aga																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274856	38274856	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	120	466	0	ENST00000425967.3:c.1724T>C	p.Ile575Thr	p.I575T	ENST00000425967	NM_001174067.1	575	aTc/aCc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38283643	38283643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186746130		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	169	504	0	ENST00000425967.3:c.835G>A	p.Val279Met	p.V279M	ENST00000425967	NM_001174067.1	279	Gtg/Atg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285882	38285882	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	57	509	0	ENST00000425967.3:c.529A>G	p.Thr177Ala	p.T177A	ENST00000425967	NM_001174067.1	177	Acc/Gcc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370933	55370933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	39	357	0	ENST00000297316.4:c.235G>A	p.Ala79Thr	p.A79T	ENST00000297316	NM_022454.3	79	Gct/Act																																																																														
NBN	4683	MSKCC	GRCh37	8	90994984	90994984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	44	384	0	ENST00000265433.3:c.137C>T	p.Ala46Val	p.A46V	ENST00000265433	NM_002485.4	46	gCt/gTt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737090	145737090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	47	352	0	ENST00000428558.2:c.3476C>T	p.Ala1159Val	p.A1159V	ENST00000428558	NM_004260.3	1159	gCt/gTt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739479	145739479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	79	282	3	ENST00000428558.2:c.1891C>T	p.Arg631Cys	p.R631C	ENST00000428558	NM_004260.3	631	Cgc/Tgc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5055753	5055753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	89	457	0	ENST00000381652.3:c.1021G>A	p.Val341Ile	p.V341I	ENST00000381652	NM_004972.3	341	Gtt/Att																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069110	5069110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	114	470	4	ENST00000381652.3:c.1415G>T	p.Ser472Ile	p.S472I	ENST00000381652	NM_004972.3	472	aGc/aTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8338983	8338983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	124	515	2	ENST00000356435.5:c.5318C>T	p.Pro1773Leu	p.P1773L	ENST00000356435		1773	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8339013	8339013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	43	473	0	ENST00000356435.5:c.5288C>T	p.Ser1763Phe	p.S1763F	ENST00000356435		1763	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971037	21971037	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	99	277	0	ENST00000361570.3:c.487C>T	p.Arg163Ter	p.R163*	ENST00000361570	NM_058195.3	163	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971037	21971037	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	99	277	0	ENST00000361570.3:c.487C>T	p.Arg163Ter	p.R163*	ENST00000361570	NM_058195.3	163	Cga/Tga																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966674	36966674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	89	303	0	ENST00000358127.4:c.652G>A	p.Asp218Asn	p.D218N	ENST00000358127	NM_001280556.1	218	Gac/Aac																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80336391	80336391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	93	267	0	ENST00000286548.4:c.928C>A	p.Leu310Met	p.L310M	ENST00000286548	NM_002072.3	310	Ctg/Atg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87475991	87475991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	104	473	0	ENST00000277120.3:c.1433G>A	p.Arg478Lys	p.R478K	ENST00000277120		478	aGa/aAa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570254	87570254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	86	197	0	ENST00000277120.3:c.1994C>T	p.Thr665Met	p.T665M	ENST00000277120		665	aCg/aTg																																																																														
SYK	6850	MSKCC	GRCh37	9	93606409	93606409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	37	346	0	ENST00000375746.1:c.229G>A	p.Ala77Thr	p.A77T	ENST00000375746	NM_001174167.1	77	Gcc/Acc																																																																														
SYK	6850	MSKCC	GRCh37	9	93639972	93639972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	45	365	1	ENST00000375746.1:c.1301G>A	p.Arg434Gln	p.R434Q	ENST00000375746	NM_001174167.1	434	cGg/cAg																																																																														
SYK	6850	MSKCC	GRCh37	9	93657854	93657854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	113	358	0	ENST00000375746.1:c.1880G>A	p.Arg627His	p.R627H	ENST00000375746	NM_001174167.1	627	cGc/cAc																																																																														
FANCC	2176	MSKCC	GRCh37	9	97897683	97897683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	129	515	3	ENST00000289081.3:c.788C>A	p.Ser263Tyr	p.S263Y	ENST00000289081	NM_000136.2	263	tCc/tAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220314	98220314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	83	301	1	ENST00000331920.6:c.3149C>T	p.Pro1050Leu	p.P1050L	ENST00000331920	NM_000264.3	1050	cCc/cTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229429	98229429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	161	598	0	ENST00000331920.6:c.2529G>A	p.Met843Ile	p.M843I	ENST00000331920	NM_000264.3	843	atG/atA																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127911992	127911992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	134	613	0	ENST00000373547.4:c.878G>A	p.Arg293His	p.R293H	ENST00000373547	NM_002721.4	293	cGt/cAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393635	139393635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	46	391	0	ENST00000277541.6:c.6011G>A	p.Arg2004His	p.R2004H	ENST00000277541	NM_017617.3	2004	cGc/cAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396275	139396275	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	116	537	0	ENST00000277541.6:c.5563A>G	p.Met1855Val	p.M1855V	ENST00000277541	NM_017617.3	1855	Atg/Gtg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139397682	139397682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	82	354	0	ENST00000277541.6:c.5119G>A	p.Ala1707Thr	p.A1707T	ENST00000277541	NM_017617.3	1707	Gcc/Acc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139410064	139410064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	113	379	0	ENST00000277541.6:c.1774C>T	p.Arg592Cys	p.R592C	ENST00000277541	NM_017617.3	592	Cgc/Tgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139411813	139411813	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	119	492	0	ENST00000277541.6:c.1466T>C	p.Val489Ala	p.V489A	ENST00000277541	NM_017617.3	489	gTc/gCc																																																																														
RET	5979	MSKCC	GRCh37	10	43601893	43601893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	93	430	0	ENST00000355710.3:c.937C>T	p.Arg313Trp	p.R313W	ENST00000355710	NM_020975.4	313	Cgg/Tgg																																																																														
RET	5979	MSKCC	GRCh37	10	43606814	43606814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	97	342	0	ENST00000355710.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000355710	NM_020975.4	475	Cgg/Tgg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852457	63852457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	111	392	0	ENST00000279873.7:c.3235C>T	p.Pro1079Ser	p.P1079S	ENST00000279873	NM_032199.2	1079	Cca/Tca																																																																														
TET1	80312	MSKCC	GRCh37	10	70411641	70411641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	70	484	0	ENST00000373644.4:c.4315C>T	p.His1439Tyr	p.H1439Y	ENST00000373644	NM_030625.2	1439	Cac/Tac																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681434	88681434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	86	277	0	ENST00000372037.3:c.1324C>T	p.Arg442Cys	p.R442C	ENST00000372037	NM_004329.2	442	Cgt/Tgt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910824	114910824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1319	188	774	1	ENST00000543371.1:c.943G>T	p.Val315Phe	p.V315F	ENST00000543371	NM_001198531.1	315	Gtc/Ttc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123260450	123260450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	42	360	0	ENST00000358487.5:c.1451G>A	p.Gly484Asp	p.G484D	ENST00000358487	NM_000141.4	484	gGc/gAc																																																																														
HRAS	3265	MSKCC	GRCh37	11	533838	533838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	139	471	0	ENST00000311189.7:c.218G>A	p.Arg73His	p.R73H	ENST00000311189		73	cGc/cAc																																																																														
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	17	345	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248580	8248580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	117	463	0	ENST00000335790.3:c.307C>T	p.Arg103Trp	p.R103W	ENST00000335790	NM_002315.2	103	Cgg/Tgg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741577	17741577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	26	205	1	ENST00000250003.3:c.248C>T	p.Ala83Val	p.A83V	ENST00000250003	NM_002478.4	83	gCg/gTg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456425	32456425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	32	312	0	ENST00000332351.3:c.467G>A	p.Cys156Tyr	p.C156Y	ENST00000332351	NM_024426.4	156	tGc/tAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136070	64136070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	26	200	0	ENST00000334205.4:c.1331G>A	p.Arg444His	p.R444H	ENST00000334205	NM_003942.2	444	cGc/cAc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571919	64571919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1280	202	735	0	ENST00000337652.1:c.1735G>A	p.Ala579Thr	p.A579T	ENST00000337652	NM_130803.2	579	Gcc/Acc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77103400	77103400	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	132	566	0	ENST00000356341.3:c.166C>T	p.Arg56Ter	p.R56*	ENST00000356341	NM_002576.4	56	Cga/Tga																																																																														
PGR	5241	MSKCC	GRCh37	11	100998235	100998235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	84	327	0	ENST00000325455.5:c.1567C>A	p.Leu523Ile	p.L523I	ENST00000325455	NM_001202474.3	523	Ctc/Atc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201802	102201802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	68	655	0	ENST00000263464.3:c.1154C>T	p.Ala385Val	p.A385V	ENST00000263464	NM_001165.4	385	gCc/gTc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102206865	102206865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138752976		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1391	207	792	1	ENST00000263464.3:c.1493C>T	p.Thr498Met	p.T498M	ENST00000263464	NM_001165.4	498	aCg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108170456	108170456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	111	407	0	ENST00000278616.4:c.5021G>A	p.Cys1674Tyr	p.C1674Y	ENST00000278616	NM_000051.3	1674	tGc/tAc																																																																														
ATM	472	MSKCC	GRCh37	11	108180936	108180936	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	100	458	0	ENST00000278616.4:c.5812T>C	p.Tyr1938His	p.Y1938H	ENST00000278616	NM_000051.3	1938	Tat/Cat																																																																														
ATM	472	MSKCC	GRCh37	11	108198407	108198407	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	129	394	0	ENST00000278616.4:c.7011T>G	p.Cys2337Trp	p.C2337W	ENST00000278616	NM_000051.3	2337	tgT/tgG																																																																														
SDHD	6392	MSKCC	GRCh37	11	111959611	111959611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	102	319	0	ENST00000375549.3:c.190C>T	p.Leu64Phe	p.L64F	ENST00000375549	NM_003002.3	64	Ctc/Ttc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118369112	118369112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	101	361	0	ENST00000534358.1:c.5830G>A	p.Ala1944Thr	p.A1944T	ENST00000534358	NM_005933.3	1944	Gcc/Acc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552618	18552618	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	135	427	0	ENST00000266497.5:c.2029T>G	p.Leu677Val	p.L677V	ENST00000266497		677	Tta/Gta																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650629	18650629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	66	402	0	ENST00000266497.5:c.2840G>A	p.Gly947Asp	p.G947D	ENST00000266497		947	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398207	25398207	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	89	449	0	ENST00000256078.4:c.111+1G>A		p.X37_splice	ENST00000256078	NM_033360.2	37																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944829	31944829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	162	644	1	ENST00000340398.3:c.272C>T	p.Ala91Val	p.A91V	ENST00000340398	NM_001013699.2	91	gCg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418699	49418699	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	87	353	0	ENST00000301067.7:c.15815C>G	p.Ala5272Gly	p.A5272G	ENST00000301067	NM_003482.3	5272	gCt/gGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420108	49420108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	131	490	0	ENST00000301067.7:c.15641G>A	p.Arg5214His	p.R5214H	ENST00000301067	NM_003482.3	5214	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425124	49425124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	146	513	0	ENST00000301067.7:c.13364G>A	p.Arg4455His	p.R4455H	ENST00000301067	NM_003482.3	4455	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433319	49433319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	116	279	0	ENST00000301067.7:c.8128G>A	p.Ala2710Thr	p.A2710T	ENST00000301067	NM_003482.3	2710	Gct/Act																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434444	49434444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	64	225	0	ENST00000301067.7:c.7109G>A	p.Arg2370His	p.R2370H	ENST00000301067	NM_003482.3	2370	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437701	49437701	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	235	591	2	ENST00000301067.7:c.5269C>T	p.Arg1757Ter	p.R1757*	ENST00000301067	NM_003482.3	1757	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443758	49443758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	50	450	0	ENST00000301067.7:c.3613G>A	p.Val1205Ile	p.V1205I	ENST00000301067	NM_003482.3	1205	Gtt/Att																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448200	49448200	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	137	425	0	ENST00000301067.7:c.401-1G>T		p.X134_splice	ENST00000301067	NM_003482.3	134																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49448713	49448713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	132	426	3	ENST00000301067.7:c.146C>A	p.Pro49His	p.P49H	ENST00000301067	NM_003482.3	49	cCc/cAc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480110	50480110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	103	322	0	ENST00000394963.4:c.344C>T	p.Ala115Val	p.A115V	ENST00000394963	NM_003076.4	115	gCg/gTg																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50482386	50482386	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	125	449	0	ENST00000394963.4:c.737A>G	p.Lys246Arg	p.K246R	ENST00000394963	NM_003076.4	246	aAa/aGa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489541	56489541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	94	411	0	ENST00000267101.3:c.2006G>A	p.Arg669His	p.R669H	ENST00000267101	NM_001982.3	669	cGc/cAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861940	57861940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	71	614	0	ENST00000228682.2:c.1241C>T	p.Pro414Leu	p.P414L	ENST00000228682	NM_005269.2	414	cCc/cTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864622	57864622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1242	189	623	1	ENST00000228682.2:c.2099C>T	p.Ala700Val	p.A700V	ENST00000228682	NM_005269.2	700	gCt/gTt																																																																														
CDK4	1019	MSKCC	GRCh37	12	58143000	58143000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	101	392	0	ENST00000257904.6:c.784C>T	p.Pro262Ser	p.P262S	ENST00000257904	NM_000075.3	262	Cct/Tct																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416800	121416800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	108	525	0	ENST00000257555.6:c.229G>A	p.Asp77Asn	p.D77N	ENST00000257555		77	Gat/Aat																																																																														
POLE	5426	MSKCC	GRCh37	12	133214643	133214643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	92	376	0	ENST00000320574.5:c.5635C>T	p.Arg1879Cys	p.R1879C	ENST00000320574	NM_006231.2	1879	Cgt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133214646	133214646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199979862		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	136	381	1	ENST00000320574.5:c.5632C>T	p.Arg1878Cys	p.R1878C	ENST00000320574	NM_006231.2	1878	Cgc/Tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133226041	133226041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	113	346	0	ENST00000320574.5:c.3856C>T	p.Arg1286Cys	p.R1286C	ENST00000320574	NM_006231.2	1286	Cgc/Tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133248860	133248860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116260568		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	196	429	0	ENST00000320574.5:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000320574	NM_006231.2	579	Cgc/Tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133250213	133250213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	183	491	1	ENST00000320574.5:c.1307C>A	p.Pro436His	p.P436H	ENST00000320574	NM_006231.2	436	cCc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133256623	133256623	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	118	519	1	ENST00000320574.5:c.340C>T	p.Arg114Ter	p.R114*	ENST00000320574	NM_006231.2	114	Cga/Tga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562477	21562477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	26	54	0	ENST00000382592.4:c.1442C>T	p.Ala481Val	p.A481V	ENST00000382592	NM_014572.2	481	gCg/gTg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967513	26967513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	105	452	0	ENST00000381527.3:c.656C>A	p.Ala219Asp	p.A219D	ENST00000381527	NM_001260.1	219	gCt/gAt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28592707	28592707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	115	416	0	ENST00000241453.7:c.2438C>T	p.Ala813Val	p.A813V	ENST00000241453	NM_004119.2	813	gCc/gTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28896980	28896980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	111	493	1	ENST00000282397.4:c.2900C>T	p.Ala967Val	p.A967V	ENST00000282397	NM_002019.4	967	gCg/gTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28931793	28931793	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	111	443	0	ENST00000282397.4:c.2146C>A	p.Leu716Met	p.L716M	ENST00000282397	NM_002019.4	716	Ctg/Atg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906958	32906958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	40	297	0	ENST00000380152.3:c.1343G>A	p.Arg448His	p.R448H	ENST00000380152		448	cGt/cAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911711	32911711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	138	821	2	ENST00000380152.3:c.3219G>T	p.Gln1073His	p.Q1073H	ENST00000380152		1073	caG/caT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913023	32913023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	131	807	1	ENST00000380152.3:c.4531G>A	p.Glu1511Lys	p.E1511K	ENST00000380152		1511	Gaa/Aaa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134123	41134123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	263	632	0	ENST00000379561.5:c.1505C>T	p.Ser502Leu	p.S502L	ENST00000379561	NM_002015.3	502	tCg/tTg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349479	73349479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	90	420	0	ENST00000377767.4:c.857C>A	p.Ala286Asp	p.A286D	ENST00000377767	NM_014953.3	286	gCt/gAt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103498677	103498677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	103	457	0	ENST00000355739.4:c.61G>A	p.Ala21Thr	p.A21T	ENST00000355739	NM_000123.3	21	Gcg/Acg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504571	103504571	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	116	563	0	ENST00000355739.4:c.192A>C	p.Lys64Asn	p.K64N	ENST00000355739	NM_000123.3	64	aaA/aaC																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103508412	103508412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	96	293	0	ENST00000355739.4:c.478G>A	p.Glu160Lys	p.E160K	ENST00000355739	NM_000123.3	160	Gaa/Aaa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436706	110436706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	98	334	0	ENST00000375856.3:c.1695G>T	p.Gln565His	p.Q565H	ENST00000375856	NM_003749.2	565	caG/caT																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438184	110438184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	27	153	0	ENST00000375856.3:c.217C>T	p.Leu73Phe	p.L73F	ENST00000375856	NM_003749.2	73	Ctc/Ttc																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872524	35872524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	247	605	2	ENST00000216797.5:c.379G>A	p.Ala127Thr	p.A127T	ENST00000216797	NM_020529.2	127	Gct/Act																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986503	36986503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	45	449	0	ENST00000354822.5:c.1186C>A	p.Leu396Ile	p.L396I	ENST00000354822	NM_001079668.2	396	Cta/Ata																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987144	36987144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	31	216	0	ENST00000354822.5:c.545A>G	p.Asn182Ser	p.N182S	ENST00000354822	NM_001079668.2	182	aAc/aGc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569756	95569756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	45	410	1	ENST00000343455.3:c.3977C>T	p.Ala1326Val	p.A1326V	ENST00000343455	NM_177438.2	1326	gCc/gTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570213	95570213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	123	438	0	ENST00000343455.3:c.3520G>T	p.Ala1174Ser	p.A1174S	ENST00000343455	NM_177438.2	1174	Gca/Tca																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574771	95574771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	130	468	0	ENST00000343455.3:c.2326G>A	p.Val776Ile	p.V776I	ENST00000343455	NM_177438.2	776	Gtt/Att																																																																														
AKT1	207	MSKCC	GRCh37	14	105246427	105246427	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	131	436	1	ENST00000349310.3:c.173C>T	p.Ala58Val	p.A58V	ENST00000349310	NM_001014432.1	58	gCg/gTg																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022941	33022941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	164	675	0	ENST00000300177.4:c.50C>T	p.Thr17Ile	p.T17I	ENST00000300177	NM_001191322.1	17	aCc/aTc																																																																														
MGA	23269	MSKCC	GRCh37	15	41961108	41961108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	153	586	0	ENST00000219905.7:c.16C>T	p.Gln6Ter	p.Q6*	ENST00000219905	NM_001164273.1	6	Cag/Tag																																																																														
MGA	23269	MSKCC	GRCh37	15	41991139	41991139	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	163	549	0	ENST00000219905.7:c.2092G>T	p.Gly698Cys	p.G698C	ENST00000219905	NM_001164273.1	698	Ggt/Tgt																																																																														
B2M	567	MSKCC	GRCh37	15	45007743	45007743	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	113	426	1	ENST00000558401.1:c.190G>T	p.Glu64Ter	p.E64*	ENST00000558401	NM_004048.2	64	Gag/Tag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66777400	66777400	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	142	478	0	ENST00000307102.5:c.766A>C	p.Met256Leu	p.M256L	ENST00000307102	NM_002755.3	256	Atg/Ctg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423587	88423587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	124	480	0	ENST00000360948.2:c.2248G>A	p.Glu750Lys	p.E750K	ENST00000360948	NM_001012338.2	750	Gag/Aag																																																																														
BLM	641	MSKCC	GRCh37	15	91354465	91354465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	95	319	0	ENST00000355112.3:c.3905C>T	p.Ser1302Phe	p.S1302F	ENST00000355112	NM_000057.2	1302	tCc/tTc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434791	99434791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	42	397	0	ENST00000268035.6:c.878C>T	p.Ser293Phe	p.S293F	ENST00000268035	NM_000875.3	293	tCc/tTc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99442709	99442709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	113	355	0	ENST00000268035.6:c.1106A>G	p.Asn369Ser	p.N369S	ENST00000268035	NM_000875.3	369	aAc/aGc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478173	99478173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	114	390	0	ENST00000268035.6:c.3077C>A	p.Pro1026His	p.P1026H	ENST00000268035	NM_000875.3	1026	cCt/cAt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478237	99478237	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	101	259	0	ENST00000268035.6:c.3141T>G	p.Phe1047Leu	p.F1047L	ENST00000268035	NM_000875.3	1047	ttT/ttG																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2213953	2213953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	119	520	1	ENST00000326181.6:c.32G>A	p.Arg11His	p.R11H	ENST00000326181	NM_032271.2	11	cGc/cAc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2221579	2221579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	115	449	0	ENST00000326181.6:c.448T>C	p.Phe150Leu	p.F150L	ENST00000326181	NM_032271.2	150	Ttc/Ctc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222281	2222281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	54	490	0	ENST00000326181.6:c.565C>T	p.Arg189Trp	p.R189W	ENST00000326181	NM_032271.2	189	Cgg/Tgg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778852	3778852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	94	281	0	ENST00000262367.5:c.6196G>A	p.Ala2066Thr	p.A2066T	ENST00000262367	NM_004380.2	2066	Gct/Act																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788668	3788668	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	95	437	0	ENST00000262367.5:c.4286T>C	p.Val1429Ala	p.V1429A	ENST00000262367	NM_004380.2	1429	gTg/gCg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3823855	3823855	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117910358		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	107	404	0	ENST00000262367.5:c.2360C>T	p.Ala787Val	p.A787V	ENST00000262367	NM_004380.2	787	gCg/gTg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14024666	14024666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	204	532	0	ENST00000311895.7:c.892C>A	p.Leu298Ile	p.L298I	ENST00000311895	NM_005236.2	298	Ctc/Atc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647440	23647440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	140	509	1	ENST00000261584.4:c.427C>A	p.Leu143Met	p.L143M	ENST00000261584	NM_024675.3	143	Ctg/Atg																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30133204	30133204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	176	578	0	ENST00000263025.4:c.294G>T	p.Glu98Asp	p.E98D	ENST00000263025	NM_002746.2	98	gaG/gaT																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645069	67645069	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	142	446	0	ENST00000264010.4:c.334G>T	p.Glu112Ter	p.E112*	ENST00000264010	NM_006565.3	112	Gaa/Taa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663385	67663385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	125	437	0	ENST00000264010.4:c.1786C>T	p.Arg596Cys	p.R596C	ENST00000264010	NM_006565.3	596	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821772	72821772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1050	70	582	0	ENST00000268489.5:c.10403G>A	p.Arg3468His	p.R3468H	ENST00000268489	NM_006885.3	3468	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829973	72829973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	241	670	1	ENST00000268489.5:c.6608G>A	p.Arg2203His	p.R2203H	ENST00000268489	NM_006885.3	2203	cGt/cAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830695	72830695	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1266	215	818	0	ENST00000268489.5:c.5886G>T	p.Glu1962Asp	p.E1962D	ENST00000268489	NM_006885.3	1962	gaG/gaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831701	72831701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1172	177	691	0	ENST00000268489.5:c.4880C>T	p.Ala1627Val	p.A1627V	ENST00000268489	NM_006885.3	1627	gCc/gTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831764	72831764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1282	187	783	0	ENST00000268489.5:c.4817G>A	p.Ser1606Asn	p.S1606N	ENST00000268489	NM_006885.3	1606	aGc/aAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993849	72993849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	86	407	0	ENST00000268489.5:c.196G>A	p.Ala66Thr	p.A66T	ENST00000268489	NM_006885.3	66	Gcg/Acg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972509	81972509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1113	172	624	1	ENST00000359376.3:c.3302C>T	p.Thr1101Met	p.T1101M	ENST00000359376	NM_002661.3	1101	aCg/aTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346153	89346153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	63	252	0	ENST00000301030.4:c.6797C>T	p.Ala2266Val	p.A2266V	ENST00000301030	NM_001256183.1	2266	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7572957	7572957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	148	533	0	ENST00000269305.4:c.1152G>A	p.Met384Ile	p.M384I	ENST00000269305	NM_001126112.2	384	atG/atA																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979661	7979661	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	66	283	0	ENST00000319144.4:c.1364G>A	p.Gly455Asp	p.G455D	ENST00000319144	NM_001139.2	455	gGc/gAc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979663	7979663	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	118	284	0	ENST00000319144.4:c.1363-1G>T		p.X455_splice	ENST00000319144	NM_001139.2	455																																																																															
AURKB	9212	MSKCC	GRCh37	17	8110098	8110098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	114	265	0	ENST00000585124.1:c.507C>A	p.Ser169Arg	p.S169R	ENST00000585124	NM_004217.3	169	agC/agA																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028632	12028632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	217	485	2	ENST00000353533.5:c.835G>A	p.Ala279Thr	p.A279T	ENST00000353533	NM_003010.3	279	Gca/Aca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983936	15983936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	91	393	0	ENST00000268712.3:c.3283G>A	p.Glu1095Lys	p.E1095K	ENST00000268712	NM_006311.3	1095	Gaa/Aaa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131277	17131277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	149	522	1	ENST00000285071.4:c.175C>T	p.Arg59Cys	p.R59C	ENST00000285071	NM_144997.5	59	Cgt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29586148	29586148	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	27	281	0	ENST00000358273.4:c.4430+1G>A		p.X1477_splice	ENST00000358273	NM_001042492.2	1477																																																																															
NF1	4763	MSKCC	GRCh37	17	29654636	29654636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	141	495	0	ENST00000358273.4:c.5388G>T	p.Glu1796Asp	p.E1796D	ENST00000358273	NM_001042492.2	1796	gaG/gaT																																																																														
NF1	4763	MSKCC	GRCh37	17	29663821	29663821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	115	534	0	ENST00000358273.4:c.6316G>A	p.Val2106Ile	p.V2106I	ENST00000358273	NM_001042492.2	2106	Gtt/Att																																																																														
NF1	4763	MSKCC	GRCh37	17	29677303	29677303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	105	499	0	ENST00000358273.4:c.7424C>A	p.Thr2475Lys	p.T2475K	ENST00000358273	NM_001042492.2	2475	aCa/aAa																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33430286	33430286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	168	565	0	ENST00000335858.7:c.389G>A	p.Gly130Asp	p.G130D	ENST00000335858	NM_133629.2	130	gGc/gAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37673787	37673787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	96	362	0	ENST00000447079.4:c.2941C>T	p.Arg981Cys	p.R981C	ENST00000447079	NM_015083.1	981	Cgt/Tgt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37873620	37873620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	143	522	2	ENST00000269571.5:c.1785C>A	p.Phe595Leu	p.F595L	ENST00000269571		595	ttC/ttA																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879858	37879858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	108	362	1	ENST00000269571.5:c.2153C>T	p.Thr718Met	p.T718M	ENST00000269571		718	aCg/aTg																																																																														
RARA	5914	MSKCC	GRCh37	17	38512383	38512383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	55	246	2	ENST00000254066.5:c.1294C>T	p.Arg432Trp	p.R432W	ENST00000254066	NM_000964.3	432	Cgg/Tgg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362303	40362303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1183	157	596	0	ENST00000293328.3:c.1792G>A	p.Val598Ile	p.V598I	ENST00000293328	NM_012448.3	598	Gta/Ata																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375543	40375543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1357	79	727	0	ENST00000293328.3:c.407C>T	p.Ala136Val	p.A136V	ENST00000293328	NM_012448.3	136	gCc/gTc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40461470	40461470	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	190	682	0	ENST00000345506.4:c.2190C>A	p.Cys730Ter	p.C730*	ENST00000345506	NM_003152.3	730	tgC/tgA																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475607	40475607	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	73	645	0	ENST00000264657.5:c.1637G>A	p.Trp546Ter	p.W546*	ENST00000264657	NM_139276.2	546	tGg/tAg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223109	41223109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	142	531	1	ENST00000357654.3:c.4822G>A	p.Ala1608Thr	p.A1608T	ENST00000357654	NM_007294.3	1608	Gca/Aca																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245027	41245027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	115	546	1	ENST00000357654.3:c.2521C>T	p.Arg841Trp	p.R841W	ENST00000357654	NM_007294.3	841	Cgg/Tgg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256241	41256241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	131	422	0	ENST00000357654.3:c.339C>A	p.Asn113Lys	p.N113K	ENST00000357654	NM_007294.3	113	aaC/aaA																																																																														
MAP3K14	0	MSKCC	GRCh37	17	43364731	43364731	+	splice_acceptor_variant,non_coding_transcript_variant	Splice_Site	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	160	587	1	ENST00000344686.2:n.436-1G>T		p.X146_splice	ENST00000344686		146																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677876	47677876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	123	304	1	ENST00000347630.2:c.989C>T	p.Ser330Leu	p.S330L	ENST00000347630	NM_001007230.1	330	tCg/tTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56434959	56434959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	59	450	0	ENST00000407977.2:c.2178G>T	p.Trp726Cys	p.W726C	ENST00000407977		726	tgG/tgT																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56772411	56772411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	156	536	0	ENST00000337432.4:c.265G>A	p.Glu89Lys	p.E89K	ENST00000337432	NM_058216.2	89	Gaa/Aaa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63530136	63530136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	158	523	0	ENST00000307078.5:c.2299A>G	p.Thr767Ala	p.T767A	ENST00000307078	NM_004655.3	767	Act/Gct																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534394	63534394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	52	404	0	ENST00000307078.5:c.1127C>T	p.Ser376Leu	p.S376L	ENST00000307078	NM_004655.3	376	tCg/tTg																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519051	66519051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	89	334	0	ENST00000358598.2:c.332C>T	p.Ala111Val	p.A111V	ENST00000358598	NM_212471.2	111	gCa/gTa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119903	70119903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	119	344	0	ENST00000245479.2:c.905G>A	p.Gly302Asp	p.G302D	ENST00000245479	NM_000346.3	302	gGc/gAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78599593	78599593	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	31	241	0	ENST00000306801.3:c.265G>A	p.Asp89Asn	p.D89N	ENST00000306801	NM_020761.2	89	Gat/Aat																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78681708	78681708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	65	418	1	ENST00000306801.3:c.416G>A	p.Arg139His	p.R139H	ENST00000306801	NM_020761.2	139	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575689	48575689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	103	353	0	ENST00000342988.3:c.449G>A	p.Ser150Asn	p.S150N	ENST00000342988	NM_005359.5	150	aGt/aAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581204	48581204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	128	517	0	ENST00000342988.3:c.508C>G	p.Pro170Ala	p.P170A	ENST00000342988	NM_005359.5	170	Cca/Gca																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	139	421	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593519	48593519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	37	307	0	ENST00000342988.3:c.1270G>T	p.Asp424Tyr	p.D424Y	ENST00000342988	NM_005359.5	424	Gat/Tat																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210837	2210837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	63	242	0	ENST00000398665.3:c.1334C>T	p.Ala445Val	p.A445V	ENST00000398665	NM_032482.2	445	gCg/gTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226346	2226346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	138	455	0	ENST00000398665.3:c.3826C>T	p.Arg1276Trp	p.R1276W	ENST00000398665	NM_032482.2	1276	Cgg/Tgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226637	2226637	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	114	354	1	ENST00000398665.3:c.4117C>A	p.Leu1373Met	p.L1373M	ENST00000398665	NM_032482.2	1373	Ctg/Atg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208010	5208010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	125	548	0	ENST00000357368.4:c.5701C>T	p.Arg1901Trp	p.R1901W	ENST00000357368	NM_002850.3	1901	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208016	5208016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	119	517	0	ENST00000357368.4:c.5695C>T	p.Arg1899Trp	p.R1899W	ENST00000357368	NM_002850.3	1899	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208051	5208051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	109	429	1	ENST00000357368.4:c.5660C>T	p.Thr1887Met	p.T1887M	ENST00000357368	NM_002850.3	1887	aCg/aTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5218798	5218798	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	130	405	0	ENST00000357368.4:c.3935G>T	p.Ser1312Ile	p.S1312I	ENST00000357368	NM_002850.3	1312	aGt/aTt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222993	5222993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	71	262	0	ENST00000357368.4:c.2810C>T	p.Ala937Val	p.A937V	ENST00000357368	NM_002850.3	937	gCg/gTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244342	5244342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	134	498	0	ENST00000357368.4:c.1140G>T	p.Glu380Asp	p.E380D	ENST00000357368	NM_002850.3	380	gaG/gaT																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274277	5274277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	61	458	0	ENST00000357368.4:c.170C>T	p.Thr57Met	p.T57M	ENST00000357368	NM_002850.3	57	aCg/aTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5286129	5286129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	193	456	0	ENST00000357368.4:c.23G>T	p.Gly8Val	p.G8V	ENST00000357368	NM_002850.3	8	gGc/gTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7267389	7267389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	115	428	0	ENST00000302850.5:c.619G>A	p.Glu207Lys	p.E207K	ENST00000302850	NM_000208.2	207	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7267410	7267410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	139	422	1	ENST00000302850.5:c.598G>A	p.Val200Ile	p.V200I	ENST00000302850	NM_000208.2	200	Gtc/Atc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247805	10247805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	121	552	1	ENST00000340748.4:c.4397G>A	p.Arg1466His	p.R1466H	ENST00000340748		1466	cGc/cAc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10284582	10284582	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	126	452	0	ENST00000340748.4:c.601-1G>T		p.X201_splice	ENST00000340748		201																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602281	10602281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	110	344	0	ENST00000171111.5:c.1297G>A	p.Gly433Ser	p.G433S	ENST00000171111	NM_203500.1	433	Ggc/Agc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134234	11134234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	152	450	1	ENST00000344626.4:c.2900G>A	p.Arg967His	p.R967H	ENST00000344626	NM_003072.3	967	cGt/cAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138521	11138521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	212	494	0	ENST00000344626.4:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000344626	NM_003072.3	1093	Cga/Tga																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14628978	14628978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	65	543	0	ENST00000254322.2:c.184G>A	p.Glu62Lys	p.E62K	ENST00000254322	NM_006145.1	62	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15297751	15297751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	144	540	0	ENST00000263388.2:c.1889C>T	p.Thr630Ile	p.T630I	ENST00000263388	NM_000435.2	630	aCc/aTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349666	15349666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200976853		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	56	201	1	ENST00000263377.2:c.3908C>T	p.Ala1303Val	p.A1303V	ENST00000263377	NM_058243.2	1303	gCg/gTg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15379802	15379802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	178	517	0	ENST00000263377.2:c.337C>T	p.Arg113Cys	p.R113C	ENST00000263377	NM_058243.2	113	Cgc/Tgc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17937659	17937659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144968714		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	117	377	0	ENST00000458235.1:c.3268G>A	p.Ala1090Thr	p.A1090T	ENST00000458235	NM_000215.3	1090	Gcc/Acc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943711	17943711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	105	260	0	ENST00000458235.1:c.2378C>A	p.Pro793His	p.P793H	ENST00000458235	NM_000215.3	793	cCt/cAt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945948	17945948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	162	464	1	ENST00000458235.1:c.1991C>T	p.Pro664Leu	p.P664L	ENST00000458235	NM_000215.3	664	cCg/cTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945969	17945969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	47	439	0	ENST00000458235.1:c.1970G>A	p.Arg657Gln	p.R657Q	ENST00000458235	NM_000215.3	657	cGg/cAg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266888	18266888	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	56	256	0	ENST00000222254.8:c.199C>T	p.Arg67Ter	p.R67*	ENST00000222254	NM_005027.3	67	Cga/Tga																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278050	18278050	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	103	407	0	ENST00000222254.8:c.1670A>G	p.Asp557Gly	p.D557G	ENST00000222254	NM_005027.3	557	gAc/gGc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279682	18279682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	68	199	0	ENST00000222254.8:c.1955G>A	p.Arg652Gln	p.R652Q	ENST00000222254	NM_005027.3	652	cGg/cAg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257985	19257985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	85	331	0	ENST00000162023.5:c.401C>A	p.Ala134Asp	p.A134D	ENST00000162023		134	gCt/gAt																																																																														
CIC	23152	MSKCC	GRCh37	19	42788884	42788884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	40	346	0	ENST00000575354.2:c.28C>T	p.Pro10Ser	p.P10S	ENST00000575354	NM_015125.3	10	Ccc/Tcc																																																																														
CIC	23152	MSKCC	GRCh37	19	42795838	42795838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	64	431	0	ENST00000575354.2:c.2827C>T	p.Pro943Ser	p.P943S	ENST00000575354	NM_015125.3	943	Cca/Tca																																																																														
CIC	23152	MSKCC	GRCh37	19	42795858	42795858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	133	436	0	ENST00000575354.2:c.2847C>A	p.Phe949Leu	p.F949L	ENST00000575354	NM_015125.3	949	ttC/ttA																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902658	50902658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	183	588	1	ENST00000440232.2:c.233G>A	p.Arg78His	p.R78H	ENST00000440232	NM_002691.3	78	cGc/cAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905516	50905516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	67	618	1	ENST00000440232.2:c.644C>T	p.Ala215Val	p.A215V	ENST00000440232	NM_002691.3	215	gCg/gTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906421	50906421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	157	492	0	ENST00000440232.2:c.1082C>T	p.Ala361Val	p.A361V	ENST00000440232	NM_002691.3	361	gCc/gTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910662	50910662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	132	555	1	ENST00000440232.2:c.1765C>T	p.Pro589Ser	p.P589S	ENST00000440232	NM_002691.3	589	Ccc/Tcc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918111	50918111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	59	611	0	ENST00000440232.2:c.2428G>A	p.Ala810Thr	p.A810T	ENST00000440232	NM_002691.3	810	Gcg/Acg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918759	50918759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	56	538	0	ENST00000440232.2:c.2629G>A	p.Asp877Asn	p.D877N	ENST00000440232	NM_002691.3	877	Gat/Aat																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624942	9624942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	50	430	1	ENST00000353224.5:c.35C>T	p.Ser12Phe	p.S12F	ENST00000353224	NM_177990.2	12	tCt/tTt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017813	31017813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	130	427	0	ENST00000375687.4:c.675G>T	p.Gln225His	p.Q225H	ENST00000375687	NM_015338.5	225	caG/caT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023964	31023964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	151	442	0	ENST00000375687.4:c.3449G>A	p.Gly1150Glu	p.G1150E	ENST00000375687	NM_015338.5	1150	gGa/gAa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31372580	31372580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	101	378	0	ENST00000328111.2:c.221G>A	p.Gly74Asp	p.G74D	ENST00000328111	NM_006892.3	74	gGc/gAc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31389203	31389203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	78	305	1	ENST00000328111.2:c.2116G>A	p.Asp706Asn	p.D706N	ENST00000328111	NM_006892.3	706	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790093	40790093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	76	299	2	ENST00000373198.4:c.2638C>A	p.Pro880Thr	p.P880T	ENST00000373198	NM_133170.3	880	Ccc/Acc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256699	46256699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	176	663	2	ENST00000371998.3:c.755G>A	p.Arg252His	p.R252H	ENST00000371998		252	cGc/cAc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268699	46268699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	188	624	0	ENST00000371998.3:c.2984C>T	p.Ala995Val	p.A995V	ENST00000371998		995	gCt/gTt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268767	46268767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1309	76	631	0	ENST00000371998.3:c.3052G>A	p.Glu1018Lys	p.E1018K	ENST00000371998		1018	Gaa/Aaa																																																																														
AURKA	6790	MSKCC	GRCh37	20	54945623	54945623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	55	161	0	ENST00000312783.6:c.947G>A	p.Gly316Glu	p.G316E	ENST00000312783	NM_198436.1	316	gGa/gAa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485816	57485816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	51	426	0	ENST00000371085.3:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000371085	NM_000516.4	373	Cgc/Tgc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485819	57485819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	127	426	0	ENST00000371085.3:c.1120C>T	p.Arg374Cys	p.R374C	ENST00000371085	NM_000516.4	374	Cgt/Tgt																																																																														
ERG	2078	MSKCC	GRCh37	21	39762950	39762950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	59	434	0	ENST00000288319.7:c.886C>T	p.Leu296Phe	p.L296F	ENST00000288319	NM_182918.3	296	Ctt/Ttt																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42842584	42842584	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147233451		P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	144	451	1	ENST00000398585.3:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000398585	NM_001135099.1	425	Gag/Aag																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42852526	42852526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	59	504	0	ENST00000398585.3:c.560G>A	p.Arg187His	p.R187H	ENST00000398585	NM_001135099.1	187	cGc/cAc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22221630	22221630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	21	193	0	ENST00000215832.6:c.101G>A	p.Gly34Asp	p.G34D	ENST00000215832	NM_002745.4	34	gGc/gAc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24167557	24167557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	67	230	0	ENST00000263121.7:c.941G>A	p.Ser314Asn	p.S314N	ENST00000263121	NM_003073.3	314	aGc/aAc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130561	29130561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	52	384	0	ENST00000328354.6:c.149G>A	p.Ser50Asn	p.S50N	ENST00000328354	NM_007194.3	50	aGc/aAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41513733	41513733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	57	437	0	ENST00000263253.7:c.637G>A	p.Gly213Arg	p.G213R	ENST00000263253	NM_001429.3	213	Gga/Aga																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314919	1314919	+	downstream_gene_variant	3'Flank	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	173	511	0				ENST00000381566																																																																																	
BCOR	54880	MSKCC	GRCh37	X	39921573	39921573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	58	541	1	ENST00000378444.4:c.4247C>T	p.Pro1416Leu	p.P1416L	ENST00000378444	NM_001123385.1	1416	cCa/cTa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930896	39930896	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	64	645	0	ENST00000378444.4:c.3045C>A	p.Tyr1015Ter	p.Y1015*	ENST00000378444	NM_001123385.1	1015	taC/taA																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933007	39933007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	140	484	1	ENST00000378444.4:c.1592C>T	p.Ala531Val	p.A531V	ENST00000378444	NM_001123385.1	531	gCa/gTa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732929	44732929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	76	314	0	ENST00000377967.4:c.132G>T	p.Glu44Asp	p.E44D	ENST00000377967	NM_021140.2	44	gaG/gaT																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820622	44820622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	110	582	1	ENST00000377967.4:c.319G>A	p.Glu107Lys	p.E107K	ENST00000377967	NM_021140.2	107	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922920	44922920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	213	621	1	ENST00000377967.4:c.1781G>A	p.Gly594Asp	p.G594D	ENST00000377967	NM_021140.2	594	gGc/gAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966766	44966766	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	136	547	0	ENST00000377967.4:c.3990C>A	p.Tyr1330Ter	p.Y1330*	ENST00000377967	NM_021140.2	1330	taC/taA																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040710	47040710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	137	553	0	ENST00000329236.7:c.1111G>A	p.Gly371Ser	p.G371S	ENST00000329236	NM_001204466.1	371	Ggc/Agc																																																																														
ARAF	369	MSKCC	GRCh37	X	47428232	47428232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	197	525	0	ENST00000377045.4:c.1192G>A	p.Asp398Asn	p.D398N	ENST00000377045	NM_001654.4	398	Gac/Aac																																																																														
ARAF	369	MSKCC	GRCh37	X	47429307	47429307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	58	536	0	ENST00000377045.4:c.1435C>T	p.Arg479Cys	p.R479C	ENST00000377045	NM_001654.4	479	Cgt/Tgt																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650858	48650858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	158	547	1	ENST00000376670.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000376670	NM_002049.3	243	Cgg/Tgg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246405	53246405	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	162	555	3	ENST00000375401.3:c.577C>A	p.His193Asn	p.H193N	ENST00000375401	NM_004187.3	193	Cac/Aac																																																																														
MED12	9968	MSKCC	GRCh37	X	70345277	70345277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	149	467	2	ENST00000374080.3:c.2303G>A	p.Arg768His	p.R768H	ENST00000374080		768	cGc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70348181	70348181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	156	517	0	ENST00000374080.3:c.3245C>T	p.Thr1082Ile	p.T1082I	ENST00000374080		1082	aCc/aTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70357220	70357220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	98	347	3	ENST00000374080.3:c.5735G>A	p.Arg1912His	p.R1912H	ENST00000374080		1912	cGc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76854981	76854981	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	137	790	0	ENST00000373344.5:c.5855T>C	p.Val1952Ala	p.V1952A	ENST00000373344	NM_000489.3	1952	gTt/gCt																																																																														
BTK	695	MSKCC	GRCh37	X	100611252	100611252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	110	322	0	ENST00000308731.7:c.1354C>T	p.Leu452Phe	p.L452F	ENST00000308731	NM_000061.2	452	Ctt/Ttt																																																																														
XIAP	331	MSKCC	GRCh37	X	123025113	123025113	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1128	167	588	2	ENST00000355640.3:c.1003G>T	p.Gly335Ter	p.G335*	ENST00000355640		335	Gga/Tga																																																																														
XIAP	331	MSKCC	GRCh37	X	123034385	123034385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	124	533	0	ENST00000355640.3:c.1142G>A	p.Arg381Gln	p.R381Q	ENST00000355640		381	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026278	48026278	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	114	310	0	ENST00000234420.5:c.1157del	p.Pro386LeufsTer25	p.P386Lfs*25	ENST00000234420	NM_000179.2	386	Cct/ct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911321	32911322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	149	783	0	ENST00000380152.3:c.2835dup	p.Asp946ArgfsTer13	p.D946Rfs*13	ENST00000380152		943	-/A																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922695	44922695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	227	515	1	ENST00000377967.4:c.1556delG	p.Arg519HisfsTer29	p.R519Hfs*29	ENST00000377967	NM_021140.2	519	cGa/ca																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0004700-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			546	495	588	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0004700-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			439	156	326	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295201	1295201	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0004700-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			327	123	234	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41385271	41385271	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004700-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			578	222	487	2	ENST00000373198.4:c.690G>A	p.Trp230Ter	p.W230*	ENST00000373198	NM_133170.3	230	tgG/tgA																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260581	16260581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004700-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			503	416	496	0	ENST00000375759.3:c.7846C>T	p.Pro2616Ser	p.P2616S	ENST00000375759	NM_015001.2	2616	Ccc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94129019	94129019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	52	753	0	ENST00000369303.4:c.41G>A	p.Cys14Tyr	p.C14Y	ENST00000369303	NM_004440.3	14	tGc/tAc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17951092	17951092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	103	552	0	ENST00000458235.1:c.1201C>G	p.Leu401Val	p.L401V	ENST00000458235	NM_000215.3	401	Ctc/Gtc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685242	89685284	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTTTTTGTTTGTTTGTTTTGTTTTAAGGTTTTTGGATTCAAA	GCTTTTTGTTTGTTTGTTTTGTTTTAAGGTTTTTGGATTCAAA	-			P-0004735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	11	144	0	ENST00000371953.3:c.165-26_181del		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																															
BRCA2	675	MSKCC	GRCh37	13	32910422	32910422	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	95	709	0	ENST00000380152.3:c.1933del	p.Arg645GlufsTer15	p.R645Efs*15	ENST00000380152		644	Aaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576848	7576851	+	splice_donor_variant,intron_variant	Splice_Site	DEL	AGTA	AGTA	-			P-0004735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	41	488	0	ENST00000269305.4:c.993+2_993+5del		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
XPO1	7514	MSKCC	GRCh37	2	61712950	61712950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	66	560	0	ENST00000401558.2:c.2461C>G	p.Gln821Glu	p.Q821E	ENST00000401558	NM_003400.3	821	Caa/Gaa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	29	273	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																														
MYC	4609	MSKCC	GRCh37	8	128750684	128750684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	62	440	0	ENST00000377970.2:c.221C>T	p.Pro74Leu	p.P74L	ENST00000377970	NM_002467.4	74	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	38	290	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	38	290	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	38	290	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829423	72829423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	91	645	0	ENST00000268489.5:c.7158G>A	p.Met2386Ile	p.M2386I	ENST00000268489	NM_006885.3	2386	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	88	542	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925484	114925486	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0004742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	90	622	0	ENST00000543371.1:c.1562_1564del	p.Leu521_Lys522delinsGln	p.L521_K522delinsQ	ENST00000543371	NM_001198531.1	521	cTGAag/cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	135	249	0				ENST00000310581	NM_198253.2																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	426	680	2	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	846	602	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	483	426	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	304	394	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	304	394	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	304	394	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	455	1034	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			22	112	175	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552758	106552758	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	225	757	2	ENST00000369096.4:c.723G>C	p.Lys241Asn	p.K241N	ENST00000369096	NM_001198.3	241	aaG/aaC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974787	21974787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	115	191	0	ENST00000304494.5:c.40G>A	p.Asp14Asn	p.D14N	ENST00000304494	NM_000077.4	14	Gac/Aac																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074169	8074169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	492	923	0	ENST00000377482.5:c.490C>G	p.Leu164Val	p.L164V	ENST00000377482	NM_018948.3	164	Ctg/Gtg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259760	16259760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	369	598	0	ENST00000375759.3:c.7025G>A	p.Arg2342Gln	p.R2342Q	ENST00000375759	NM_015001.2	2342	cGa/cAa																																																																														
STK40	83931	MSKCC	GRCh37	1	36808989	36808989	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	118	636	0	ENST00000373129.3:c.1065G>C	p.Met355Ile	p.M355I	ENST00000373129	NM_032017.1	355	atG/atC																																																																														
JUN	3725	MSKCC	GRCh37	1	59248409	59248409	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	92	399	1	ENST00000371222.2:c.334G>C	p.Glu112Gln	p.E112Q	ENST00000371222	NM_002228.3	112	Gag/Cag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965437	25965437	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	384	605	0	ENST00000435504.4:c.3769G>C	p.Asp1257His	p.D1257H	ENST00000435504		1257	Gat/Cat																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965581	25965581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	302	502	0	ENST00000435504.4:c.3625G>A	p.Asp1209Asn	p.D1209N	ENST00000435504		1209	Gac/Aac																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966396	25966396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	443	671	1	ENST00000435504.4:c.2810G>A	p.Gly937Glu	p.G937E	ENST00000435504		937	gGa/gAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966716	25966716	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	307	522	0	ENST00000435504.4:c.2490G>C	p.Glu830Asp	p.E830D	ENST00000435504		830	gaG/gaC																																																																														
BARD1	580	MSKCC	GRCh37	2	215646225	215646225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	176	227	0	ENST00000260947.4:c.373G>C	p.Glu125Gln	p.E125Q	ENST00000260947	NM_000465.2	125	Gaa/Caa																																																																														
RHOA	387	MSKCC	GRCh37	3	49405945	49405945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	186	709	0	ENST00000418115.1:c.193G>T	p.Asp65Tyr	p.D65Y	ENST00000418115	NM_001664.2	65	Gat/Tat																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940753	49940753	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	191	802	0	ENST00000296474.3:c.290G>C	p.Gly97Ala	p.G97A	ENST00000296474	NM_002447.2	97	gGa/gCa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623143	52623143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	227	594	0	ENST00000394830.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000394830	NM_018313.4	970	Gag/Aag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623266	52623266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	153	394	1	ENST00000394830.3:c.2785G>A	p.Glu929Lys	p.E929K	ENST00000394830	NM_018313.4	929	Gaa/Aaa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72890267	72890267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	207	626	0	ENST00000325599.8:c.415G>C	p.Glu139Gln	p.E139Q	ENST00000325599	NM_018130.2	139	Gaa/Caa																																																																														
ATR	545	MSKCC	GRCh37	3	142269119	142269119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	420	447	0	ENST00000350721.4:c.2831G>C	p.Ser944Thr	p.S944T	ENST00000350721	NM_001184.3	944	aGt/aCt																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84388672	84388672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	297	526	0	ENST00000321945.7:c.616G>C	p.Asp206His	p.D206H	ENST00000321945	NM_139076.2	206	Gat/Cat																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520273	176520273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	70	271	1	ENST00000292408.4:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000292408	NM_213647.1	398	Cgg/Tgg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176662842	176662842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	313	517	0	ENST00000439151.2:c.3817C>T	p.Arg1273Cys	p.R1273C	ENST00000439151	NM_022455.4	1273	Cgc/Tgc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32189097	32189097	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	127	411	2	ENST00000375023.3:c.457C>T	p.Gln153Ter	p.Q153*	ENST00000375023	NM_004557.3	153	Cag/Tag																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971307	13971307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	173	545	0	ENST00000405192.2:c.622C>A	p.Arg208Ser	p.R208S	ENST00000405192	NM_001163147.1	208	Cgt/Agt																																																																														
HGF	3082	MSKCC	GRCh37	7	81399283	81399283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	133	554	0	ENST00000222390.5:c.5G>C	p.Trp2Ser	p.W2S	ENST00000222390	NM_000601.4	2	tGg/tCg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787841	135787841	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	288	421	0	ENST00000298552.3:c.741G>A	p.Trp247Ter	p.W247*	ENST00000298552	NM_001162426.1	247	tgG/tgA																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911614	114911614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	230	721	0	ENST00000543371.1:c.1132G>A	p.Ala378Thr	p.A378T	ENST00000543371	NM_001198531.1	378	Gcg/Acg																																																																														
ATM	472	MSKCC	GRCh37	11	108155060	108155060	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	240	459	0	ENST00000278616.4:c.3853G>C	p.Asp1285His	p.D1285H	ENST00000278616	NM_000051.3	1285	Gac/Cac																																																																														
CCND2	894	MSKCC	GRCh37	12	4387980	4387980	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	160	613	0	ENST00000261254.3:c.466C>G	p.Pro156Ala	p.P156A	ENST00000261254	NM_001759.3	156	Cct/Gct																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992190	11992190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	342	512	0	ENST00000396373.4:c.280C>T	p.Leu94Phe	p.L94F	ENST00000396373	NM_001987.4	94	Ctc/Ttc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434181	49434181	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	196	686	0	ENST00000301067.7:c.7372C>T	p.Gln2458Ter	p.Q2458*	ENST00000301067	NM_003482.3	2458	Cag/Tag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73334699	73334699	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	330	467	0	ENST00000377767.4:c.2761C>T	p.Gln921Ter	p.Q921*	ENST00000377767	NM_014953.3	921	Cag/Tag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570392	95570392	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	113	356	0	ENST00000343455.3:c.3341C>G	p.Ser1114Cys	p.S1114C	ENST00000343455	NM_177438.2	1114	tCt/tGt																																																																														
BLM	641	MSKCC	GRCh37	15	91341444	91341444	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	414	693	0	ENST00000355112.3:c.3235G>C	p.Asp1079His	p.D1079H	ENST00000355112	NM_000057.2	1079	Gac/Cac																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99482565	99482565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	111	546	1	ENST00000268035.6:c.3433G>A	p.Glu1145Lys	p.E1145K	ENST00000268035	NM_000875.3	1145	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786769	3786769	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	250	660	0	ENST00000262367.5:c.4442A>G	p.Asp1481Gly	p.D1481G	ENST00000262367	NM_004380.2	1481	gAt/gGt																																																																														
CDH1	999	MSKCC	GRCh37	16	68842388	68842388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	262	684	0	ENST00000261769.5:c.449G>A	p.Arg150Lys	p.R150K	ENST00000261769	NM_004360.3	150	aGa/aAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627206	37627206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	373	560	0	ENST00000447079.4:c.1121G>A	p.Arg374Lys	p.R374K	ENST00000447079	NM_015083.1	374	aGa/aAa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462551	40462551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	353	670	2	ENST00000345506.4:c.2249G>A	p.Gly750Glu	p.G750E	ENST00000345506	NM_003152.3	750	gGa/gAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604685	48604685	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	58	432	0	ENST00000342988.3:c.1507A>T	p.Met503Leu	p.M503L	ENST00000342988	NM_005359.5	503	Atg/Ttg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10244905	10244905	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	299	654	0	ENST00000340748.4:c.4804G>C	p.Glu1602Gln	p.E1602Q	ENST00000340748		1602	Gag/Cag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602754	10602754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	404	686	0	ENST00000171111.5:c.824C>T	p.Ser275Leu	p.S275L	ENST00000171111	NM_203500.1	275	tCg/tTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41573521	41573521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	344	575	1	ENST00000263253.7:c.5806G>A	p.Ala1936Thr	p.A1936T	ENST00000263253	NM_001429.3	1936	Gcg/Acg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938423	44938423	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	518	393	0	ENST00000377967.4:c.2971G>T	p.Glu991Ter	p.E991*	ENST00000377967	NM_021140.2	991	Gaa/Taa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123164952	123164952	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	451	345	0	ENST00000218089.9:c.265A>T	p.Lys89Ter	p.K89*	ENST00000218089	NM_001042749.1	89	Aaa/Taa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819280	3819281	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0004755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	186	513	0	ENST00000262367.5:c.2954_2955delinsAA	p.Ser985Ter	p.S985*	ENST00000262367	NM_004380.2	985	tCC/tAA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	258	158	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0004765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	422	194	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	312	157	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	312	157	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	312	157	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107125	27107125	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	150	176	0	ENST00000324856.7:c.6736G>T	p.Glu2246Ter	p.E2246*	ENST00000324856	NM_006015.4	2246	Gag/Tag																																																																														
PARP1	142	MSKCC	GRCh37	1	226576430	226576430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	143	284	0	ENST00000366794.5:c.644G>C	p.Gly215Ala	p.G215A	ENST00000366794	NM_001618.3	215	gGa/gCa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71050155	71050155	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	167	251	0	ENST00000318789.4:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000318789	NM_032682.5	344	Caa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16062127	16062127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	237	302	0	ENST00000268712.3:c.679C>T	p.Pro227Ser	p.P227S	ENST00000268712	NM_006311.3	227	Cct/Tct																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59857624	59857624	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0004765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	170	240	0	ENST00000259008.2:c.1933C>T	p.Gln645Ter	p.Q645*	ENST00000259008	NM_032043.2	645	Cag/Tag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797356	135797356	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	219	207	0	ENST00000298552.3:c.513del	p.His171GlnfsTer39	p.H171Qfs*39	ENST00000298552	NM_001162426.1	171	caC/ca																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651970	36651971	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	644	277	0	ENST00000244741.5:c.94dup	p.Arg32ProfsTer4	p.R32Pfs*4	ENST00000244741	NM_000389.4	31	agc/agCc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	18	246	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	533552	533552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	37	395	0	ENST00000311189.7:c.351G>C	p.Lys117Asn	p.K117N	ENST00000311189		117	aaG/aaC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	178	113	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0004800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	216	256	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20148727	20148727	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0004800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	204	90	0	ENST00000379607.5:c.338-2A>T		p.X113_splice	ENST00000379607	NM_001412.3	113																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134851693	134851693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	55	400	0	ENST00000398015.3:c.1099C>T	p.Arg367Cys	p.R367C	ENST00000398015	NM_004441.4	367	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928226	178928226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	49	346	0	ENST00000263967.3:c.1412C>T	p.Pro471Leu	p.P471L	ENST00000263967	NM_006218.2	471	cCa/cTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	172	300	0				ENST00000310581	NM_198253.2																																																																																
RASA1	5921	MSKCC	GRCh37	5	86672738	86672738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	61	378	0	ENST00000274376.6:c.2225C>T	p.Ser742Leu	p.S742L	ENST00000274376	NM_002890.2	742	tCa/tTa																																																																														
IRF4	3662	MSKCC	GRCh37	6	407526	407526	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	87	419	0	ENST00000380956.4:c.1284C>G	p.Tyr428Ter	p.Y428*	ENST00000380956	NM_001195286.1	428	taC/taG																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045678	26045679	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	91	693	0	ENST00000540144.1:c.40_41delinsAA	p.Gly14Asn	p.G14N	ENST00000540144	NM_003531.2	14	GGc/AAc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680835	30680835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	68	518	0	ENST00000376406.3:c.884C>T	p.Pro295Leu	p.P295L	ENST00000376406	NM_014641.2	295	cCt/cTt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120563	94120563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1320	80	610	0	ENST00000369303.4:c.488G>A	p.Arg163Lys	p.R163K	ENST00000369303	NM_004440.3	163	aGa/aAa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553404	106553404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	49	213	1	ENST00000369096.4:c.1369C>T	p.Pro457Ser	p.P457S	ENST00000369096	NM_001198.3	457	Ccc/Tcc																																																																														
HGF	3082	MSKCC	GRCh37	7	81374403	81374403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	60	454	0	ENST00000222390.5:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000222390	NM_000601.4	220	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151849913	151849913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	64	395	0	ENST00000262189.6:c.12403G>A	p.Gly4135Ser	p.G4135S	ENST00000262189	NM_170606.2	4135	Ggt/Agt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372004	55372004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	97	272	0	ENST00000297316.4:c.694C>T	p.Pro232Ser	p.P232S	ENST00000297316	NM_022454.3	232	Ccc/Tcc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741464	145741464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	121	538	1	ENST00000428558.2:c.1039C>T	p.Arg347Cys	p.R347C	ENST00000428558	NM_004260.3	347	Cgc/Tgc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126433	5126433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	170	318	0	ENST00000381652.3:c.3278G>A	p.Gly1093Glu	p.G1093E	ENST00000381652	NM_004972.3	1093	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	147	317	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	147	317	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TET1	80312	MSKCC	GRCh37	10	70332242	70332242	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	66	680	0	ENST00000373644.4:c.147A>C	p.Leu49Phe	p.L49F	ENST00000373644	NM_030625.2	49	ttA/ttC																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243226	123243226	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	68	600	0	ENST00000358487.5:c.2287C>G	p.Leu763Val	p.L763V	ENST00000358487	NM_000141.4	763	Ctc/Gtc																																																																														
WT1	7490	MSKCC	GRCh37	11	32414302	32414302	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	52	289	0	ENST00000332351.3:c.1250-1G>T		p.X417_splice	ENST00000332351	NM_024426.4	417																																																																															
SH2B3	10019	MSKCC	GRCh37	12	111856050	111856051	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	41	340	0	ENST00000341259.2:c.101_102delinsTT	p.Ala34Val	p.A34V	ENST00000341259	NM_005475.2	34	gCC/gTT																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434498	121434498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	76	450	0	ENST00000257555.6:c.1262C>T	p.Ser421Phe	p.S421F	ENST00000257555		421	tCc/tTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	56	457	0	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478614	99478614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	68	404	0	ENST00000268035.6:c.3256G>A	p.Asp1086Asn	p.D1086N	ENST00000268035	NM_000875.3	1086	Gat/Aat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346822	89346822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	54	467	0	ENST00000301030.4:c.6128C>T	p.Ala2043Val	p.A2043V	ENST00000301030	NM_001256183.1	2043	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	57	488	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	65	491	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579442	7579442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	40	396	0	ENST00000269305.4:c.245C>T	p.Pro82Leu	p.P82L	ENST00000269305	NM_001126112.2	82	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579580	7579580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	52	320	0	ENST00000269305.4:c.107C>T	p.Pro36Leu	p.P36L	ENST00000269305	NM_001126112.2	36	cCg/cTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15960910	15960910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	56	409	0	ENST00000268712.3:c.6310G>A	p.Glu2104Lys	p.E2104K	ENST00000268712	NM_006311.3	2104	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29483080	29483080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	46	501	0	ENST00000358273.4:c.140C>T	p.Ser47Phe	p.S47F	ENST00000358273	NM_001042492.2	47	tCc/tTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794470	42794471	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	82	490	1	ENST00000575354.2:c.1550_1551delinsTT	p.Pro517Leu	p.P517L	ENST00000575354	NM_015125.3	517	cCC/cTT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30946621	30946621	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	44	196	0	ENST00000375687.4:c.43G>C	p.Glu15Gln	p.E15Q	ENST00000375687	NM_015338.5	15	Gag/Cag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748610	40748610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	70	452	0	ENST00000373198.4:c.2906G>A	p.Gly969Glu	p.G969E	ENST00000373198	NM_133170.3	969	gGa/gAa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164717	36164718	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	116	414	0	ENST00000300305.3:c.1157_1158delinsTT	p.Pro386Leu	p.P386L	ENST00000300305		386	cCC/cTT																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314925	1314925	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0004831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	50	542	0				ENST00000381566																																																																																	
ERRFI1	54206	MSKCC	GRCh37	1	8073427	8073427	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	394	1358	0	ENST00000377482.5:c.1232T>G	p.Phe411Cys	p.F411C	ENST00000377482	NM_018948.3	411	tTt/tGt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073435	8073435	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	417	1354	0	ENST00000377482.5:c.1224A>C	p.Glu408Asp	p.E408D	ENST00000377482	NM_018948.3	408	gaA/gaC																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074126	8074126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	401	1252	2	ENST00000377482.5:c.533A>G	p.Asp178Gly	p.D178G	ENST00000377482	NM_018948.3	178	gAt/gGt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782177	9782177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	143	521	0	ENST00000377346.4:c.2200C>A	p.Pro734Thr	p.P734T	ENST00000377346	NM_005026.3	734	Cca/Aca																																																																														
MTOR	2475	MSKCC	GRCh37	1	11307888	11307888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	297	896	0	ENST00000361445.4:c.1104G>T	p.Glu368Asp	p.E368D	ENST00000361445	NM_004958.3	368	gaG/gaT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259962	16259962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	262	920	3	ENST00000375759.3:c.7227G>T	p.Glu2409Asp	p.E2409D	ENST00000375759	NM_015001.2	2409	gaG/gaT																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363069	40363069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	197	600	0	ENST00000397332.2:c.1160G>T	p.Arg387Ile	p.R387I	ENST00000397332	NM_001033082.2	387	aGa/aTa																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521530	46521530	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	277	871	1	ENST00000262741.5:c.878A>C	p.Lys293Thr	p.K293T	ENST00000262741	NM_003629.3	293	aAa/aCa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46733260	46733260	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	246	759	0	ENST00000371975.4:c.1021T>G	p.Phe341Val	p.F341V	ENST00000371975	NM_003579.3	341	Ttt/Gtt																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733503	85733503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	309	1203	1	ENST00000370580.1:c.509C>A	p.Ser170Tyr	p.S170Y	ENST00000370580	NM_003921.4	170	tCt/tAt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851255	156851255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	251	899	1	ENST00000524377.1:c.2212G>A	p.Asp738Asn	p.D738N	ENST00000524377	NM_002529.3	738	Gac/Aac																																																																														
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	151	459	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193104720	193104720	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	142	504	0	ENST00000367435.3:c.423+1G>A		p.X141_splice	ENST00000367435	NM_024529.4	141																																																																															
CDC73	79577	MSKCC	GRCh37	1	193111048	193111048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	156	611	1	ENST00000367435.3:c.581G>T	p.Arg194Ile	p.R194I	ENST00000367435	NM_024529.4	194	aGa/aTa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111186	193111186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	133	593	1	ENST00000367435.3:c.719G>A	p.Ser240Asn	p.S240N	ENST00000367435	NM_024529.4	240	aGc/aAc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716043	243716043	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	140	520	0	ENST00000263826.5:c.1151A>G	p.Asp384Gly	p.D384G	ENST00000263826	NM_005465.4	384	gAt/gGt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243727102	243727102	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	144	582	0	ENST00000263826.5:c.868T>G	p.Phe290Val	p.F290V	ENST00000263826	NM_005465.4	290	Ttt/Gtt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243778426	243778426	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	145	540	0	ENST00000263826.5:c.599T>G	p.Leu200Ter	p.L200*	ENST00000263826	NM_005465.4	200	tTa/tGa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085942	16085942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	176	511	2	ENST00000281043.3:c.1118G>A	p.Arg373Gln	p.R373Q	ENST00000281043	NM_005378.4	373	cGa/cAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	151	574	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																														
ALK	238	MSKCC	GRCh37	2	29430047	29430047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	228	803	0	ENST00000389048.3:c.3928A>G	p.Thr1310Ala	p.T1310A	ENST00000389048	NM_004304.4	1310	Aca/Gca																																																																														
ALK	238	MSKCC	GRCh37	2	29455275	29455275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	213	601	0	ENST00000389048.3:c.2527G>A	p.Gly843Arg	p.G843R	ENST00000389048	NM_004304.4	843	Gga/Aga																																																																														
ALK	238	MSKCC	GRCh37	2	29940455	29940455	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138686378		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	167	791	5	ENST00000389048.3:c.776G>A	p.Arg259His	p.R259H	ENST00000389048	NM_004304.4	259	cGc/cAc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47690242	47690242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	196	737	0	ENST00000233146.2:c.1459G>T	p.Asp487Tyr	p.D487Y	ENST00000233146	NM_000251.2	487	Gac/Tac																																																																														
XPO1	7514	MSKCC	GRCh37	2	61720080	61720080	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	149	507	0	ENST00000401558.2:c.1354A>C	p.Asn452His	p.N452H	ENST00000401558	NM_003400.3	452	Aat/Cat																																																																														
BARD1	580	MSKCC	GRCh37	2	215645665	215645665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	169	531	0	ENST00000260947.4:c.933G>T	p.Lys311Asn	p.K311N	ENST00000260947	NM_000465.2	311	aaG/aaT																																																																														
VHL	7428	MSKCC	GRCh37	3	10183595	10183595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	306	912	0	ENST00000256474.2:c.64G>A	p.Glu22Lys	p.E22K	ENST00000256474	NM_000551.3	22	Gag/Aag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37050324	37050324	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	195	724	0	ENST00000231790.2:c.473A>G	p.Asn158Ser	p.N158S	ENST00000231790	NM_000249.3	158	aAc/aGc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268762	41268762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	207	714	1	ENST00000349496.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000349496	NM_001904.3	334	Gaa/Aaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163233	47163233	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	171	687	0	ENST00000409792.3:c.2893G>T	p.Glu965Ter	p.E965*	ENST00000409792	NM_014159.6	965	Gaa/Taa																																																																														
MST1	4485	MSKCC	GRCh37	3	49724685	49724685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	163	620	0	ENST00000449682.2:c.504G>T	p.Glu168Asp	p.E168D	ENST00000449682	NM_020998.3	168	gaG/gaT																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026984	71026984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	133	390	0	ENST00000318789.4:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000318789	NM_032682.5	448	tCg/tTg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71050190	71050190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	150	392	1	ENST00000318789.4:c.995C>T	p.Ala332Val	p.A332V	ENST00000318789	NM_032682.5	332	gCg/gTg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72891469	72891469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	187	515	0	ENST00000325599.8:c.293G>T	p.Arg98Ile	p.R98I	ENST00000325599	NM_018130.2	98	aGa/aTa																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664792	138664792	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	16	46	0	ENST00000330315.3:c.773A>G	p.Tyr258Cys	p.Y258C	ENST00000330315	NM_023067.3	258	tAc/tGc																																																																														
ATR	545	MSKCC	GRCh37	3	142224146	142224146	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	139	473	0	ENST00000350721.4:c.5032-1G>T		p.X1678_splice	ENST00000350721	NM_001184.3	1678																																																																															
ATR	545	MSKCC	GRCh37	3	142269003	142269003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	212	723	0	ENST00000350721.4:c.2947G>A	p.Asp983Asn	p.D983N	ENST00000350721	NM_001184.3	983	Gac/Aac																																																																														
ATR	545	MSKCC	GRCh37	3	142281484	142281484	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	202	633	0	ENST00000350721.4:c.760G>T	p.Glu254Ter	p.E254*	ENST00000350721	NM_001184.3	254	Gaa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142281952	142281952	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	50	269	1	ENST00000350721.4:c.293-1G>T		p.X98_splice	ENST00000350721	NM_001184.3	98																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	243	973	1	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	94	350	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189584500	189584500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	192	652	2	ENST00000264731.3:c.796C>T	p.Arg266Ter	p.R266*	ENST00000264731	NM_003722.4	266	Cga/Tga																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55131106	55131106	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	263	691	1	ENST00000257290.5:c.649G>T	p.Glu217Ter	p.E217*	ENST00000257290	NM_006206.4	217	Gaa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	230	692	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230870	66230870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	147	574	0	ENST00000273854.3:c.2101G>A	p.Glu701Lys	p.E701K	ENST00000273854	NM_004439.5	701	Gaa/Aaa																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84393430	84393430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	144	482	0	ENST00000321945.7:c.227C>A	p.Ser76Tyr	p.S76Y	ENST00000321945	NM_139076.2	76	tCt/tAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106162525	106162525	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	131	494	1	ENST00000380013.4:c.3439T>G	p.Phe1147Val	p.F1147V	ENST00000380013	NM_001127208.2	1147	Ttt/Gtt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332718	153332718	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	179	530	0	ENST00000281708.4:c.238A>C	p.Asn80His	p.N80H	ENST00000281708	NM_033632.3	80	Aac/Cac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557284	187557284	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	243	705	1	ENST00000441802.2:c.4078G>T	p.Glu1360Ter	p.E1360*	ENST00000441802	NM_005245.3	1360	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584696	187584696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144526682		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	290	834	4	ENST00000441802.2:c.3337G>A	p.Asp1113Asn	p.D1113N	ENST00000441802	NM_005245.3	1113	Gat/Aat																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873734	35873734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	160	553	0	ENST00000303115.3:c.690G>T	p.Glu230Asp	p.E230D	ENST00000303115	NM_002185.3	230	gaG/gaT																																																																														
IL7R	3575	MSKCC	GRCh37	5	35875685	35875685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	198	671	0	ENST00000303115.3:c.872G>T	p.Arg291Ile	p.R291I	ENST00000303115	NM_002185.3	291	aGa/aTa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950600	38950600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	217	869	0	ENST00000357387.3:c.3350G>A	p.Gly1117Glu	p.G1117E	ENST00000357387	NM_152756.3	1117	gGa/gAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56152491	56152491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	193	622	0	ENST00000399503.3:c.547C>T	p.Arg183Ter	p.R183*	ENST00000399503	NM_005921.1	183	Cga/Tga																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56184180	56184180	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	138	446	0	ENST00000399503.3:c.4385T>G	p.Phe1462Cys	p.F1462C	ENST00000399503	NM_005921.1	1462	tTt/tGt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752839	57752839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	131	475	2	ENST00000274289.3:c.1089C>A	p.Phe363Leu	p.F363L	ENST00000274289	NM_006622.3	363	ttC/ttA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67575550	67575550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	148	403	0	ENST00000274335.5:c.623C>A	p.Ser208Tyr	p.S208Y	ENST00000274335		208	tCt/tAt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86629147	86629147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	165	495	0	ENST00000274376.6:c.892G>T	p.Glu298Ter	p.E298*	ENST00000274376	NM_002890.2	298	Gaa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645121	86645121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	160	445	0	ENST00000274376.6:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000274376	NM_002890.2	398	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86649000	86649000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	155	519	0	ENST00000274376.6:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000274376	NM_002890.2	427	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112175876	112175876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	196	542	0	ENST00000257430.4:c.4585C>T	p.Gln1529Ter	p.Q1529*	ENST00000257430	NM_000038.5	1529	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112177788	112177788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	153	504	0	ENST00000257430.4:c.6497G>A	p.Arg2166Gln	p.R2166Q	ENST00000257430	NM_000038.5	2166	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	180	519	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	203	679	1	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112178541	112178541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	165	540	0	ENST00000257430.4:c.7250C>A	p.Ser2417Tyr	p.S2417Y	ENST00000257430	NM_000038.5	2417	tCt/tAt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176666761	176666761	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	214	672	0	ENST00000439151.2:c.4197T>G	p.Asn1399Lys	p.N1399K	ENST00000439151	NM_022455.4	1399	aaT/aaG																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673782	176673782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	209	680	0	ENST00000439151.2:c.4482G>T	p.Glu1494Asp	p.E1494D	ENST00000439151	NM_022455.4	1494	gaG/gaT																																																																														
IRF4	3662	MSKCC	GRCh37	6	401711	401711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	237	640	0	ENST00000380956.4:c.1033G>A	p.Asp345Asn	p.D345N	ENST00000380956	NM_001195286.1	345	Gac/Aac																																																																														
IRF4	3662	MSKCC	GRCh37	6	405111	405111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	222	731	0	ENST00000380956.4:c.1193G>T	p.Arg398Ile	p.R398I	ENST00000380956	NM_001195286.1	398	aGa/aTa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967895	93967895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	269	1016	0	ENST00000369303.4:c.2032G>T	p.Asp678Tyr	p.D678Y	ENST00000369303	NM_004440.3	678	Gac/Tac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979246	93979246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	261	1047	0	ENST00000369303.4:c.1582C>T	p.Pro528Ser	p.P528S	ENST00000369303	NM_004440.3	528	Ccc/Tcc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715366	117715366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	151	538	0	ENST00000368508.3:c.1123G>T	p.Asp375Tyr	p.D375Y	ENST00000368508	NM_002944.2	375	Gat/Tat																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202210	138202210	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	228	596	0	ENST00000237289.4:c.2127A>C	p.Gln709His	p.Q709H	ENST00000237289	NM_001270507.1	709	caA/caC																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265319	152265319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	176	614	0	ENST00000206249.3:c.772G>T	p.Asp258Tyr	p.D258Y	ENST00000206249	NM_000125.3	258	Gac/Tac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157525044	157525044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	241	773	0	ENST00000346085.5:c.4939C>A	p.Leu1647Ile	p.L1647I	ENST00000346085	NM_020732.3	1647	Ctt/Att																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729604	41729604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	305	1065	2	ENST00000242208.4:c.925C>T	p.Arg309Trp	p.R309W	ENST00000242208	NM_002192.2	309	Cgg/Tgg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444401	50444401	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	170	469	0	ENST00000331340.3:c.331C>T	p.Arg111Ter	p.R111*	ENST00000331340	NM_006060.4	111	Cga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509539	106509539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	235	615	1	ENST00000359195.3:c.1533G>T	p.Glu511Asp	p.E511D	ENST00000359195	NM_002649.2	511	gaG/gaT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152027816	152027816	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	202	565	0	ENST00000262189.6:c.259G>T	p.Glu87Ter	p.E87*	ENST00000262189	NM_170606.2	87	Gaa/Taa																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346008	152346008	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139219364		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	336	1152	0	ENST00000359321.1:c.562C>T	p.Arg188Cys	p.R188C	ENST00000359321	NM_005431.1	188	Cgc/Tgc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5050761	5050761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	153	534	0	ENST00000381652.3:c.544G>A	p.Ala182Thr	p.A182T	ENST00000381652	NM_004972.3	182	Gca/Aca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449814	8449814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	150	458	1	ENST00000356435.5:c.3899G>T	p.Arg1300Ile	p.R1300I	ENST00000356435		1300	aGa/aTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484149	8484149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	194	681	0	ENST00000356435.5:c.3383T>G	p.Leu1128Arg	p.L1128R	ENST00000356435		1128	cTg/cGg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	129	450	2	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633380	8633380	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	160	722	1	ENST00000356435.5:c.289G>T	p.Glu97Ter	p.E97*	ENST00000356435		97	Gaa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974825	21974825	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	31	109	0	ENST00000304494.5:c.2T>C	p.Met1?	p.M1?	ENST00000304494	NM_000077.4	1	aTg/aCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974825	21974825	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	31	109	0	ENST00000304494.5:c.2T>C	p.Met1?	p.M1?	ENST00000304494	NM_000077.4	1	aTg/aCg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342596	87342596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	153	564	2	ENST00000277120.3:c.881C>A	p.Ser294Tyr	p.S294Y	ENST00000277120		294	tCt/tAt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570366	87570366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	284	956	2	ENST00000277120.3:c.2106G>T	p.Glu702Asp	p.E702D	ENST00000277120		702	gaG/gaT																																																																														
FANCC	2176	MSKCC	GRCh37	9	98011564	98011564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	169	524	0	ENST00000289081.3:c.10G>T	p.Asp4Tyr	p.D4Y	ENST00000289081	NM_000136.2	4	Gat/Tat																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98232138	98232138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	184	577	0	ENST00000331920.6:c.1804C>T	p.Arg602Ter	p.R602*	ENST00000331920	NM_000264.3	602	Cga/Tga																																																																														
TET1	80312	MSKCC	GRCh37	10	70333850	70333850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	210	664	2	ENST00000373644.4:c.1755G>T	p.Lys585Asn	p.K585N	ENST00000373644	NM_030625.2	585	aaG/aaT																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672037	88672037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	87	340	1	ENST00000372037.3:c.571C>T	p.Arg191Cys	p.R191C	ENST00000372037	NM_004329.2	191	Cgt/Tgt																																																																														
SUFU	51684	MSKCC	GRCh37	10	104377097	104377097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	245	969	0	ENST00000369902.3:c.1208A>G	p.Asp403Gly	p.D403G	ENST00000369902	NM_016169.3	403	gAc/gGc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589651	69589651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	93	288	0	ENST00000168712.1:c.202G>A	p.Ala68Thr	p.A68T	ENST00000168712	NM_002007.2	68	Gcc/Acc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102198863	102198863	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	264	944	0	ENST00000263464.3:c.1032+2T>C		p.X344_splice	ENST00000263464	NM_001165.4	344																																																																															
ATM	472	MSKCC	GRCh37	11	108115673	108115673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	149	447	0	ENST00000278616.4:c.821C>A	p.Ser274Tyr	p.S274Y	ENST00000278616	NM_000051.3	274	tCt/tAt																																																																														
ATM	472	MSKCC	GRCh37	11	108115717	108115717	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	119	387	0	ENST00000278616.4:c.865A>C	p.Ile289Leu	p.I289L	ENST00000278616	NM_000051.3	289	Atc/Ctc																																																																														
ATM	472	MSKCC	GRCh37	11	108153581	108153581	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	95	450	0	ENST00000278616.4:c.3721T>G	p.Tyr1241Asp	p.Y1241D	ENST00000278616	NM_000051.3	1241	Tac/Gac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344036	118344036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	167	488	0	ENST00000534358.1:c.2162G>A	p.Arg721Gln	p.R721Q	ENST00000534358	NM_005933.3	721	cGa/cAa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	420091	420091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	243	697	0	ENST00000399788.2:c.3176G>A	p.Arg1059Gln	p.R1059Q	ENST00000399788	NM_001042603.1	1059	cGg/cAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18446950	18446950	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	99	431	0	ENST00000266497.5:c.1034+1G>T		p.X345_splice	ENST00000266497		345																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18499648	18499648	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	230	728	0	ENST00000266497.5:c.1503T>G	p.Phe501Leu	p.F501L	ENST00000266497		501	ttT/ttG																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285685	46285685	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	119	459	0	ENST00000334344.6:c.5045T>G	p.Phe1682Cys	p.F1682C	ENST00000334344	NM_152641.2	1682	tTt/tGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418670	49418670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	262	789	0	ENST00000301067.7:c.15844C>T	p.Arg5282Ter	p.R5282*	ENST00000301067	NM_003482.3	5282	Cga/Tga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859665	57859665	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	360	1277	0	ENST00000228682.2:c.719A>G	p.Asp240Gly	p.D240G	ENST00000228682	NM_005269.2	240	gAt/gGt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861838	57861838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	437	1338	0	ENST00000228682.2:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000228682	NM_005269.2	380	cGa/cAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115392	115115392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	237	772	0	ENST00000257566.3:c.934G>T	p.Glu312Ter	p.E312*	ENST00000257566	NM_016569.3	312	Gaa/Taa																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536873	120536873	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	308	1240	0	ENST00000229340.5:c.313G>T	p.Glu105Ter	p.E105*	ENST00000229340	NM_006861.6	105	Gaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	287	797	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21553895	21553895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	363	903	1	ENST00000382592.4:c.2707C>A	p.Leu903Ile	p.L903I	ENST00000382592	NM_014572.2	903	Ctc/Atc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134988	41134988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	359	1073	1	ENST00000379561.5:c.640C>T	p.Arg214Cys	p.R214C	ENST00000379561	NM_002015.3	214	Cgt/Tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	48881438	48881438	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	112	481	0	ENST00000267163.4:c.160G>T	p.Glu54Ter	p.E54*	ENST00000267163	NM_000321.2	54	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48916843	48916843	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	99	402	0	ENST00000267163.4:c.373G>T	p.Glu125Ter	p.E125*	ENST00000267163	NM_000321.2	125	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48955481	48955481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	176	604	0	ENST00000267163.4:c.1597G>A	p.Glu533Lys	p.E533K	ENST00000267163	NM_000321.2	533	Gaa/Aaa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566237	95566237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	136	512	0	ENST00000343455.3:c.4086G>T	p.Lys1362Asn	p.K1362N	ENST00000343455	NM_177438.2	1362	aaG/aaT																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729175	66729175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	273	700	0	ENST00000307102.5:c.383G>A	p.Gly128Asp	p.G128D	ENST00000307102	NM_002755.3	128	gGc/gAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476262	88476262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	171	637	0	ENST00000360948.2:c.1870G>T	p.Asp624Tyr	p.D624Y	ENST00000360948	NM_001012338.2	624	Gac/Tac																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680780	88680780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	201	669	0	ENST00000360948.2:c.477G>T	p.Gln159His	p.Q159H	ENST00000360948	NM_001012338.2	159	caG/caT																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434589	99434589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	203	572	0	ENST00000268035.6:c.676G>A	p.Glu226Lys	p.E226K	ENST00000268035	NM_000875.3	226	Gag/Aag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134992	2134992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	301	1051	1	ENST00000219476.3:c.4534G>A	p.Asp1512Asn	p.D1512N	ENST00000219476	NM_000548.3	1512	Gac/Aac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857401	9857401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	162	656	0	ENST00000330684.3:c.4000A>G	p.Ser1334Gly	p.S1334G	ENST00000330684	NM_001134407.1	1334	Agc/Ggc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858276	9858276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	198	657	0	ENST00000330684.3:c.3125G>T	p.Arg1042Met	p.R1042M	ENST00000330684	NM_001134407.1	1042	aGg/aTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858544	9858544	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	250	772	0	ENST00000330684.3:c.2857G>T	p.Glu953Ter	p.E953*	ENST00000330684	NM_001134407.1	953	Gag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923465	9923465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	236	718	0	ENST00000330684.3:c.1822C>A	p.Leu608Ile	p.L608I	ENST00000330684	NM_001134407.1	608	Ctt/Att																																																																														
CDH1	999	MSKCC	GRCh37	16	68857307	68857307	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	182	510	1	ENST00000261769.5:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000261769	NM_004360.3	648	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822178	72822178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	365	1196	0	ENST00000268489.5:c.9997C>A	p.Gln3333Lys	p.Q3333K	ENST00000268489	NM_006885.3	3333	Cag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832339	72832339	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	356	1227	0	ENST00000268489.5:c.4242A>C	p.Glu1414Asp	p.E1414D	ENST00000268489	NM_006885.3	1414	gaA/gaC																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350710	89350710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138898373		P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	425	1537	3	ENST00000301030.4:c.2240C>T	p.Ser747Leu	p.S747L	ENST00000301030	NM_001256183.1	747	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	653	958	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16040679	16040679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	197	648	0	ENST00000268712.3:c.1455G>T	p.Glu485Asp	p.E485D	ENST00000268712	NM_006311.3	485	gaG/gaT																																																																														
CD79B	974	MSKCC	GRCh37	17	62006623	62006623	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	206	775	0	ENST00000392795.3:c.656T>G	p.Val219Gly	p.V219G	ENST00000392795	NM_001039933.1	219	gTg/gGg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554264	63554264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	257	798	0	ENST00000307078.5:c.475G>T	p.Asp159Tyr	p.D159Y	ENST00000307078	NM_004655.3	159	Gat/Tat																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554343	63554343	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	271	824	0	ENST00000307078.5:c.396A>C	p.Lys132Asn	p.K132N	ENST00000307078	NM_004655.3	132	aaA/aaC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593465	48593465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	188	573	2	ENST00000342988.3:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000342988	NM_005359.5	406	Gcg/Acg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	253	598	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																														
BCL2	596	MSKCC	GRCh37	18	60795942	60795942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	271	763	3	ENST00000333681.4:c.636C>A	p.Phe212Leu	p.F212L	ENST00000333681		212	ttC/ttA																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626925	14626925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	338	1228	0	ENST00000254322.2:c.850G>A	p.Val284Ile	p.V284I	ENST00000254322	NM_006145.1	284	Gta/Ata																																																																														
AXL	558	MSKCC	GRCh37	19	41726544	41726544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	201	662	0	ENST00000301178.4:c.89C>T	p.Thr30Met	p.T30M	ENST00000301178	NM_021913.4	30	aCg/aTg																																																																														
AXL	558	MSKCC	GRCh37	19	41748909	41748909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	228	847	1	ENST00000301178.4:c.1434G>T	p.Glu478Asp	p.E478D	ENST00000301178	NM_021913.4	478	gaG/gaT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023264	31023264	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	257	868	0	ENST00000375687.4:c.2749G>T	p.Glu917Ter	p.E917*	ENST00000375687	NM_015338.5	917	Gaa/Taa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39725906	39725906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	161	482	0	ENST00000361337.2:c.777C>A	p.Phe259Leu	p.F259L	ENST00000361337	NM_003286.2	259	ttC/ttA																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1327744	1327744	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	299	835	0	ENST00000381566.1:c.137G>A	p.Trp46Ter	p.W46*	ENST00000381566		46	tGg/tAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411783	63411783	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	336	630	0	ENST00000330258.3:c.1384G>T	p.Glu462Ter	p.E462*	ENST00000330258	NM_152424.3	462	Gaa/Taa																																																																														
AR	367	MSKCC	GRCh37	X	66765820	66765820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	267	435	2	ENST00000374690.3:c.832G>A	p.Ala278Thr	p.A278T	ENST00000374690	NM_000044.3	278	Gct/Act																																																																														
MED12	9968	MSKCC	GRCh37	X	70348535	70348535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	326	499	1	ENST00000374080.3:c.3442C>T	p.Arg1148Cys	p.R1148C	ENST00000374080		1148	Cgc/Tgc																																																																														
BTK	695	MSKCC	GRCh37	X	100617205	100617205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	284	435	0	ENST00000308731.7:c.544C>T	p.Arg182Trp	p.R182W	ENST00000308731	NM_000061.2	182	Cgg/Tgg																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94226073	94226073	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	31	102	0	ENST00000323929.3:c.-105-1G>T		p.X35_splice	ENST00000323929	NM_005591.3	35																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004876-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			169	35	226	0				ENST00000310581	NM_198253.2																																																																																
GLI1	2735	MSKCC	GRCh37	12	57865272	57865272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004876-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			434	101	592	0	ENST00000228682.2:c.2749G>T	p.Asp917Tyr	p.D917Y	ENST00000228682	NM_005269.2	917	Gat/Tat																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335818	73335818	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004876-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			301	68	335	0	ENST00000377767.4:c.2477A>G	p.Tyr826Cys	p.Y826C	ENST00000377767	NM_014953.3	826	tAt/tGt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2103416	2103416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004876-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			244	49	347	1	ENST00000219476.3:c.299C>T	p.Ala100Val	p.A100V	ENST00000219476	NM_000548.3	100	gCg/gTg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733170	74733170	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004876-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			433	108	444	0	ENST00000359995.5:c.73A>T	p.Thr25Ser	p.T25S	ENST00000359995	NM_001195427.1	25	Acc/Tcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092967	27092980	+	frameshift_variant	Frame_Shift_Del	DEL	GATGATGGGCCTTG	GATGATGGGCCTTG	-			P-0004876-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			338	81	423	0	ENST00000324856.7:c.2899_2912del	p.Met967GlyfsTer35	p.M967Gfs*35	ENST00000324856	NM_006015.4	966	gaGATGATGGGCCTTGgg/gagg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162335	47162342	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGAGAA	TGAGAGAA	-			P-0004876-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			226	52	274	0	ENST00000409792.3:c.3784_3791del	p.Phe1262ArgfsTer11	p.F1262Rfs*11	ENST00000409792	NM_014159.6	1262	TTCTCTCAa/a																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266129	41266130	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCTCCT			P-0004876-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			386	81	367	0	ENST00000349496.5:c.127_132dup	p.Ala43_Pro44dup	p.A43_P44dup	ENST00000349496	NM_001904.3	43	-/GCTCCT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	175	546	4	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	204	651	2	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851645	134851645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	125	425	2	ENST00000398015.3:c.1051C>T	p.Arg351Trp	p.R351W	ENST00000398015	NM_004441.4	351	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295386	1295386	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	10	142	0				ENST00000310581	NM_198253.2																																																																																
PRDM1	639	MSKCC	GRCh37	6	106553611	106553611	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	56	150	0	ENST00000369096.4:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000369096	NM_001198.3	526	Gaa/Caa																																																																														
RARA	5914	MSKCC	GRCh37	17	38511656	38511656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1808	123	430	0	ENST00000254066.5:c.1154G>A	p.Arg385Gln	p.R385Q	ENST00000254066	NM_000964.3	385	cGa/cAa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101911542	101911542	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	139	444	0	ENST00000374994.4:c.1467del	p.Thr491HisfsTer56	p.T491Hfs*56	ENST00000374994	NM_004612.2	489	aaG/aa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56171029	56171030	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	101	320	0	ENST00000399503.3:c.1858dup	p.Ser620LysfsTer26	p.S620Kfs*26	ENST00000399503	NM_005921.1	619	-/A																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0004997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	86	215	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0004997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	77	231	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
RHOA	387	MSKCC	GRCh37	3	49412940	49412940	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	210	413	0	ENST00000418115.1:c.83A>G	p.Asp28Gly	p.D28G	ENST00000418115	NM_001664.2	28	gAc/gGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860608	151860608	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	155	334	0	ENST00000262189.6:c.10054C>T	p.Gln3352Ter	p.Q3352*	ENST00000262189	NM_170606.2	3352	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427240	49427240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	138	254	0	ENST00000301067.7:c.11248C>A	p.Gln3750Lys	p.Q3750K	ENST00000301067	NM_003482.3	3750	Cag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431175	49431175	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	162	418	0	ENST00000301067.7:c.9964C>T	p.Gln3322Ter	p.Q3322*	ENST00000301067	NM_003482.3	3322	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431790	49431790	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	128	272	0	ENST00000301067.7:c.9349G>T	p.Glu3117Ter	p.E3117*	ENST00000301067	NM_003482.3	3117	Gag/Tag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44937715	44937715	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	116	154	0	ENST00000377967.4:c.2903C>G	p.Thr968Arg	p.T968R	ENST00000377967	NM_021140.2	968	aCa/aGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	43	174	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	47	78	0	ENST00000324856.7:c.413C>G	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tGa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	223	358	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073487	8073487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	209	598	0	ENST00000377482.5:c.1172C>A	p.Ser391Ter	p.S391*	ENST00000377482	NM_018948.3	391	tCa/tAa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178097266	178097266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	77	402	0	ENST00000397062.3:c.448C>T	p.His150Tyr	p.H150Y	ENST00000397062	NM_006164.4	150	Cac/Tac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242436	55242436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	106	307	0	ENST00000275493.2:c.2206G>A	p.Glu736Lys	p.E736K	ENST00000275493	NM_005228.3	736	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55260483	55260483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	121	435	0	ENST00000275493.2:c.2650G>A	p.Glu884Lys	p.E884K	ENST00000275493	NM_005228.3	884	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	42053981	42053981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	103	536	0	ENST00000219905.7:c.7443G>C	p.Leu2481Phe	p.L2481F	ENST00000219905	NM_001164273.1	2481	ttG/ttC																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843558	3843558	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	104	363	0	ENST00000262367.5:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000262367	NM_004380.2	349	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	123	311	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0005143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	145	370	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097631	27097631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	250	515	0	ENST00000324856.7:c.3220C>T	p.Arg1074Trp	p.R1074W	ENST00000324856	NM_006015.4	1074	Cgg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165020	47165020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	226	413	0	ENST00000409792.3:c.1106C>A	p.Ser369Tyr	p.S369Y	ENST00000409792	NM_014159.6	369	tCt/tAt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786956	135786956	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	160	388	0	ENST00000298552.3:c.914-1G>A		p.X305_splice	ENST00000298552	NM_001162426.1	305																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770626	40770626	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	119	429	0	ENST00000373198.4:c.2756A>G	p.Gln919Arg	p.Q919R	ENST00000373198	NM_133170.3	919	cAg/cGg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176461	123176465	+	frameshift_variant	Frame_Shift_Del	DEL	AGATA	AGATA	-			P-0005143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	313	301	0	ENST00000218089.9:c.429_433del	p.Glu143AspfsTer6	p.E143Dfs*6	ENST00000218089	NM_001042749.1	143	gAGATA/g																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820754	3820775	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAGTCTGCCCGGAAGACGAC	GGGAGTCTGCCCGGAAGACGAC	-			P-0005143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	164	605	0	ENST00000262367.5:c.2676_2697del	p.Ser893ProfsTer27	p.S893Pfs*27	ENST00000262367	NM_004380.2	892	gtGTCGTCTTCCGGGCAGACTCCC/gt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255210	16255210	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	101	545	0	ENST00000375759.3:c.2475A>T	p.Lys825Asn	p.K825N	ENST00000375759	NM_015001.2	825	aaA/aaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248766	212248766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	37	245	1	ENST00000342788.4:c.3501G>T	p.Glu1167Asp	p.E1167D	ENST00000342788	NM_005235.2	1167	gaG/gaT																																																																														
RHOA	387	MSKCC	GRCh37	3	49405948	49405948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	58	490	0	ENST00000418115.1:c.190G>A	p.Glu64Lys	p.E64K	ENST00000418115	NM_001664.2	64	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971057	21971057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	286	292	0	ENST00000304494.5:c.301G>T	p.Gly101Trp	p.G101W	ENST00000304494	NM_000077.4	101	Ggg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971057	21971057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	286	292	0	ENST00000304494.5:c.301G>T	p.Gly101Trp	p.G101W	ENST00000304494	NM_000077.4	101	Ggg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971057	21971057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	286	292	0	ENST00000304494.5:c.301G>T	p.Gly101Trp	p.G101W	ENST00000304494	NM_000077.4	101	Ggg/Tgg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650633	18650633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	83	403	0	ENST00000266497.5:c.2844G>T	p.Leu948Phe	p.L948F	ENST00000266497		948	ttG/ttT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440047	49440047	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	129	445	0	ENST00000301067.7:c.4579G>T	p.Glu1527Ter	p.E1527*	ENST00000301067	NM_003482.3	1527	Gaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133201552	133201552	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	229	391	0	ENST00000320574.5:c.6686A>C	p.Glu2229Ala	p.E2229A	ENST00000320574	NM_006231.2	2229	gAg/gCg																																																																														
RB1	5925	MSKCC	GRCh37	13	49039195	49039195	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	65	444	0	ENST00000267163.4:c.2273C>A	p.Ser758Ter	p.S758*	ENST00000267163	NM_000321.2	758	tCg/tAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679729	88679729	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	30	476	0	ENST00000360948.2:c.734T>G	p.Val245Gly	p.V245G	ENST00000360948	NM_001012338.2	245	gTc/gGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993506	72993506	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	179	540	0	ENST00000268489.5:c.539A>T	p.Lys180Met	p.K180M	ENST00000268489	NM_006885.3	180	aAg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	83	378	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59820466	59820466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	83	405	0	ENST00000259008.2:c.2287G>T	p.Gly763Cys	p.G763C	ENST00000259008	NM_032043.2	763	Ggt/Tgt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560934	9560934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	26	416	0	ENST00000353224.5:c.848G>T	p.Arg283Leu	p.R283L	ENST00000353224	NM_177990.2	283	cGg/cTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	70	469	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	55	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78433847	78433848	+	splice_donor_variant	Splice_Site	DEL	AC	AC	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	70	418	0	ENST00000370768.2:c.250+1_250+2del		p.X84_splice	ENST00000370768	NM_003902.3	84																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	38	119	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2977554	2977554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	142	374	0	ENST00000396946.4:c.1130G>A	p.Arg377Gln	p.R377Q	ENST00000396946	NM_032415.4	377	cGg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	40	294	0	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	44	319	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680655	88680655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142726068		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	74	539	1	ENST00000360948.2:c.602G>A	p.Arg201His	p.R201H	ENST00000360948	NM_001012338.2	201	cGc/cAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803616	1803616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	49	291	1	ENST00000260795.2:c.794C>T	p.Ala265Val	p.A265V	ENST00000260795		265	gCg/gTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434745	110434745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	47	289	0	ENST00000375856.3:c.3656C>T	p.Pro1219Leu	p.P1219L	ENST00000375856	NM_003749.2	1219	cCg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420108	49420108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	80	516	1	ENST00000301067.7:c.15641G>A	p.Arg5214His	p.R5214H	ENST00000301067	NM_003482.3	5214	cGc/cAc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937914	36937914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	90	606	0	ENST00000361632.4:c.922C>T	p.Arg308Cys	p.R308C	ENST00000361632		308	Cgc/Tgc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652386	206652386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	87	473	0	ENST00000367120.3:c.1093G>A	p.Val365Ile	p.V365I	ENST00000367120	NM_014002.3	365	Gtc/Atc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243828079	243828079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	67	441	0	ENST00000263826.5:c.279G>T	p.Glu93Asp	p.E93D	ENST00000263826	NM_005465.4	93	gaG/gaT																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630499	47630499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	48	340	0	ENST00000233146.2:c.169G>A	p.Val57Met	p.V57M	ENST00000233146	NM_000251.2	57	Gtg/Atg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038196	128038196	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs150954655		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	72	481	2	ENST00000285398.2:c.1354C>T	p.Arg452Ter	p.R452*	ENST00000285398	NM_000122.1	452	Cga/Tga																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198270162	198270162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	75	439	0	ENST00000335508.6:c.1274G>A	p.Arg425Gln	p.R425Q	ENST00000335508	NM_012433.2	425	cGa/cAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212652872	212652872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	45	396	0	ENST00000342788.4:c.434G>A	p.Gly145Asp	p.G145D	ENST00000342788	NM_005235.2	145	gGt/gAt																																																																														
INHA	3623	MSKCC	GRCh37	2	220439724	220439724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201577506		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	84	589	2	ENST00000243786.2:c.577G>A	p.Val193Ile	p.V193I	ENST00000243786	NM_002191.3	193	Gtc/Atc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528572	89528572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	64	448	4	ENST00000336596.2:c.2872G>A	p.Val958Met	p.V958M	ENST00000336596	NM_005233.5	958	Gtg/Atg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924382	131924382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	56	314	0	ENST00000265335.6:c.1055G>A	p.Arg352His	p.R352H	ENST00000265335		352	cGt/cAt																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271533	26271533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1368	145	914	1	ENST00000305910.3:c.80G>A	p.Arg27Gln	p.R27Q	ENST00000305910	NM_003534.2	27	cGg/cAg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129373	152129373	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	60	315	0	ENST00000206249.3:c.326T>C	p.Met109Thr	p.M109T	ENST00000206249	NM_000125.3	109	aTg/aCg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2951852	2951852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	66	433	0	ENST00000396946.4:c.3098C>T	p.Ala1033Val	p.A1033V	ENST00000396946	NM_032415.4	1033	gCg/gTg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730040	41730040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	188	711	1	ENST00000242208.4:c.489G>T	p.Lys163Asn	p.K163N	ENST00000242208	NM_002192.2	163	aaG/aaT																																																																														
MET	4233	MSKCC	GRCh37	7	116415000	116415000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	66	524	0	ENST00000397752.3:c.3094T>C	p.Ser1032Pro	p.S1032P	ENST00000397752	NM_000245.2	1032	Tcc/Ccc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860343	151860343	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	48	529	0	ENST00000262189.6:c.10319A>C	p.Glu3440Ala	p.E3440A	ENST00000262189	NM_170606.2	3440	gAg/gCg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100420	8100420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	78	444	0	ENST00000346208.3:c.394G>A	p.Val132Ile	p.V132I	ENST00000346208		132	Gtc/Atc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742934	17742934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	57	267	0	ENST00000250003.3:c.842G>A	p.Arg281His	p.R281H	ENST00000250003	NM_002478.4	281	cGc/cAc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94170371	94170371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	48	413	0	ENST00000323929.3:c.1898G>A	p.Arg633Gln	p.R633Q	ENST00000323929	NM_005591.3	633	cGa/cAa																																																																														
PGR	5241	MSKCC	GRCh37	11	100998199	100998199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	56	347	0	ENST00000325455.5:c.1603C>T	p.Pro535Ser	p.P535S	ENST00000325455	NM_001202474.3	535	Ccg/Tcg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111886063	111886063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	184	611	1	ENST00000341259.2:c.1685G>A	p.Arg562Gln	p.R562Q	ENST00000341259	NM_005475.2	562	cGg/cAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133220437	133220437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	56	391	1	ENST00000320574.5:c.4276G>A	p.Val1426Ile	p.V1426I	ENST00000320574	NM_006231.2	1426	Gta/Ata																																																																														
POLE	5426	MSKCC	GRCh37	12	133257858	133257858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	158	485	0	ENST00000320574.5:c.70G>A	p.Gly24Ser	p.G24S	ENST00000320574	NM_006231.2	24	Ggc/Agc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347237	89347237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	89	496	0	ENST00000301030.4:c.5713G>T	p.Gly1905Trp	p.G1905W	ENST00000301030	NM_001256183.1	1905	Ggg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29533316	29533316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	86	466	1	ENST00000358273.4:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000358273	NM_001042492.2	440	cGa/cAa																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370307	40370307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	105	885	0	ENST00000293328.3:c.1031C>T	p.Thr344Ile	p.T344I	ENST00000293328	NM_012448.3	344	aCc/aTc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40486062	40486062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	109	631	0	ENST00000264657.5:c.803C>T	p.Thr268Met	p.T268M	ENST00000264657	NM_139276.2	268	aCg/aTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120253	70120253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	105	557	0	ENST00000245479.2:c.1255G>A	p.Ala419Thr	p.A419T	ENST00000245479	NM_000346.3	419	Gcc/Acc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3121145	3121145	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	94	437	0	ENST00000078429.4:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000078429	NM_002067.2	350	Cag/Tag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244223	5244223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199851847		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	67	349	0	ENST00000357368.4:c.1259G>A	p.Arg420His	p.R420H	ENST00000357368	NM_002850.3	420	cGc/cAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602571	10602571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	79	416	0	ENST00000171111.5:c.1007G>A	p.Arg336Gln	p.R336Q	ENST00000171111	NM_203500.1	336	cGa/cAa																																																																														
AKT2	208	MSKCC	GRCh37	19	40739787	40739787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	84	427	0	ENST00000392038.2:c.1438C>A	p.Arg480Ser	p.R480S	ENST00000392038	NM_001626.4	480	Cgc/Agc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9547019	9547019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	45	175	0	ENST00000353224.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000353224	NM_177990.2	335	Cga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220401	123220401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	110	253	0	ENST00000218089.9:c.3058G>A	p.Val1020Ile	p.V1020I	ENST00000218089	NM_001042749.1	1020	Gtt/Att																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	20	140	0	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049853	16049853	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	49	393	0	ENST00000268712.3:c.919del	p.Ile307SerfsTer19	p.I307Sfs*19	ENST00000268712	NM_006311.3	307	Atc/tc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	85	602	1	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910590	29910590	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	54	241	0	ENST00000376809.5:c.133delC	p.Arg45AlafsTer32	p.R45Afs*32	ENST00000376809	NM_002116.7	44	Ccc/cc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21553861	21553861	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	63	543	3	ENST00000382592.4:c.2741delT	p.Leu914TrpfsTer10	p.L914Wfs*10	ENST00000382592	NM_014572.2	914	tTg/tg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096044	11096044	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	62	415	0	ENST00000344626.4:c.321del	p.Pro109ArgfsTer194	p.P109Rfs*194	ENST00000344626	NM_003072.3	106	atG/at																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874990	151874992	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	92	446	0	ENST00000262189.6:c.7546_7548del	p.Arg2516del	p.R2516del	ENST00000262189	NM_170606.2	2516	AGA/-																																																																														
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	82	595	4	ENST00000355112.3:c.3651delA	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448304	56448304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	62	271	0	ENST00000407977.2:c.343del	p.Ala115ProfsTer43	p.A115Pfs*43	ENST00000407977		115	Gcc/cc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430901	181430901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	72	572	0	ENST00000325404.1:c.758del	p.Pro253LeufsTer21	p.P253Lfs*21	ENST00000325404	NM_003106.3	251	agC/ag																																																																														
BCL6	604	MSKCC	GRCh37	3	187446270	187446270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	38	293	0	ENST00000232014.4:c.1418delC	p.Pro473ArgfsTer117	p.P473Rfs*117	ENST00000232014	NM_001130845.1	473	cCg/cg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732910	44732910	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	43	225	0	ENST00000377967.4:c.117del	p.Ser40AlafsTer2	p.S40Afs*2	ENST00000377967	NM_021140.2	38	tCc/tc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151856099	151856100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	64	542	0	ENST00000262189.6:c.11518dup	p.Thr3840AsnfsTer6	p.T3840Nfs*6	ENST00000262189	NM_170606.2	3840	aca/aAca																																																																														
MGA	23269	MSKCC	GRCh37	15	42021441	42021442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	62	757	2	ENST00000219905.7:c.3744dup	p.Glu1249ArgfsTer25	p.E1249Rfs*25	ENST00000219905	NM_001164273.1	1246	cga/cgAa																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145358	58145360	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0005197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	90	444	1	ENST00000257904.6:c.141_143del	p.Gly48del	p.G48del	ENST00000257904	NM_000075.3	47	ggAGGc/ggc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255734	16255734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	138	453	1	ENST00000375759.3:c.2999C>T	p.Pro1000Leu	p.P1000L	ENST00000375759	NM_015001.2	1000	cCa/cTa																																																																														
STK40	83931	MSKCC	GRCh37	1	36823931	36823931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144341018		P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	206	560	0	ENST00000373129.3:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000373129	NM_032017.1	84	cGg/cAg																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166268	118166268	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	34	440	0	ENST00000369448.3:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000369448	NM_017709.3	260	Cag/Tag																																																																														
IL10	3586	MSKCC	GRCh37	1	206945747	206945747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	125	399	0	ENST00000423557.1:c.34C>T	p.Leu12Phe	p.L12F	ENST00000423557	NM_000572.2	12	Ctc/Ttc																																																																														
FH	2271	MSKCC	GRCh37	1	241667525	241667525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	91	386	0	ENST00000366560.3:c.925C>T	p.Pro309Ser	p.P309S	ENST00000366560	NM_000143.3	309	Ccg/Tcg																																																																														
ALK	238	MSKCC	GRCh37	2	30143167	30143167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	136	304	0	ENST00000389048.3:c.359C>T	p.Ala120Val	p.A120V	ENST00000389048	NM_004304.4	120	gCc/gTc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47606125	47606125	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	81	459	0	ENST00000263735.4:c.589C>T	p.Gln197Ter	p.Q197*	ENST00000263735	NM_002354.2	197	Caa/Taa																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881333	111881333	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	165	459	1	ENST00000393256.3:c.11A>C	p.Gln4Pro	p.Q4P	ENST00000393256	NM_006538.4	4	cAa/cCa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128050212	128050212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	137	476	0	ENST00000285398.2:c.445C>T	p.Pro149Ser	p.P149S	ENST00000285398	NM_000122.1	149	Cct/Tct																																																																														
BARD1	580	MSKCC	GRCh37	2	215645501	215645501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	93	512	0	ENST00000260947.4:c.1097C>T	p.Pro366Leu	p.P366L	ENST00000260947	NM_000465.2	366	cCt/cTt																																																																														
ATR	545	MSKCC	GRCh37	3	142178199	142178199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	43	322	0	ENST00000350721.4:c.7219C>T	p.Arg2407Cys	p.R2407C	ENST00000350721	NM_001184.3	2407	Cgc/Tgc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167812	185167812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	110	484	0	ENST00000265026.3:c.1135C>T	p.Pro379Ser	p.P379S	ENST00000265026	NM_004721.4	379	Cct/Tct																																																																														
TP63	8626	MSKCC	GRCh37	3	189526280	189526280	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	75	347	0	ENST00000264731.3:c.544C>T	p.Gln182Ter	p.Q182*	ENST00000264731	NM_003722.4	182	Cag/Tag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803097	1803097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	166	422	0	ENST00000260795.2:c.449C>T	p.Ala150Val	p.A150V	ENST00000260795		150	gCc/gTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138618	55138618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	100	451	0	ENST00000257290.5:c.1295C>T	p.Thr432Met	p.T432M	ENST00000257290	NM_006206.4	432	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554978	187554978	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	73	392	2	ENST00000441802.2:c.4184-1G>T		p.X1395_splice	ENST00000441802	NM_005245.3	1395																																																																															
TERT	7015	MSKCC	GRCh37	5	1280367	1280367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	207	434	0	ENST00000310581.5:c.1856C>T	p.Ser619Phe	p.S619F	ENST00000310581	NM_198253.2	619	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1282608	1282608	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	198	475	0	ENST00000310581.5:c.1705C>T	p.Gln569Ter	p.Q569*	ENST00000310581	NM_198253.2	569	Caa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	64	135	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35871205	35871205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	95	433	0	ENST00000303115.3:c.427G>A	p.Ala143Thr	p.A143T	ENST00000303115	NM_002185.3	143	Gcc/Acc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876347	35876347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	77	427	0	ENST00000303115.3:c.1139C>T	p.Pro380Leu	p.P380L	ENST00000303115	NM_002185.3	380	cCt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112178211	112178211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	81	462	1	ENST00000257430.4:c.6920C>T	p.Ser2307Leu	p.S2307L	ENST00000257430	NM_000038.5	2307	tCg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112178502	112178503	+	missense_variant	Missense_Mutation	DNP	TG	TG	GA			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	78	443	0	ENST00000257430.4:c.7211_7212delinsGA	p.Met2404Arg	p.M2404R	ENST00000257430	NM_000038.5	2404	aTG/aGA																																																																														
NPM1	4869	MSKCC	GRCh37	5	170818714	170818715	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	78	334	0	ENST00000296930.5:c.263_264delinsTT	p.Ser88Phe	p.S88F	ENST00000296930	NM_002520.6	88	tCC/tTT																																																																														
IRF4	3662	MSKCC	GRCh37	6	393183	393183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	164	325	0	ENST00000380956.4:c.31G>A	p.Glu11Lys	p.E11K	ENST00000380956	NM_001195286.1	11	Gag/Aag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979257	93979257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	94	687	0	ENST00000369303.4:c.1571G>A	p.Gly524Glu	p.G524E	ENST00000369303	NM_004440.3	524	gGa/gAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100465	157100465	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			33	17	23	0	ENST00000346085.5:c.1402C>T	p.Gln468Ter	p.Q468*	ENST00000346085	NM_020732.3	468	Cag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522149	157522149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	91	380	0	ENST00000346085.5:c.4421C>T	p.Pro1474Leu	p.P1474L	ENST00000346085	NM_020732.3	1474	cCc/cTc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6045628	6045628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	39	123	0	ENST00000265849.7:c.58C>T	p.Arg20Trp	p.R20W	ENST00000265849	NM_000535.5	20	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273131	55273131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	124	478	1	ENST00000275493.2:c.3454G>A	p.Asp1152Asn	p.D1152N	ENST00000275493	NM_005228.3	1152	Gac/Aac																																																																														
HGF	3082	MSKCC	GRCh37	7	81335633	81335633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	58	411	0	ENST00000222390.5:c.1727G>A	p.Gly576Glu	p.G576E	ENST00000222390	NM_000601.4	576	gGa/gAa																																																																														
MET	4233	MSKCC	GRCh37	7	116340007	116340007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	46	381	0	ENST00000397752.3:c.869C>T	p.Ser290Phe	p.S290F	ENST00000397752	NM_000245.2	290	tCc/tTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140500213	140500213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	146	457	0	ENST00000288602.6:c.929C>T	p.Thr310Ile	p.T310I	ENST00000288602	NM_004333.4	310	aCt/aTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874754	151874754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	186	368	0	ENST00000262189.6:c.7784C>T	p.Pro2595Leu	p.P2595L	ENST00000262189	NM_170606.2	2595	cCc/cTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877914	151877914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	84	402	0	ENST00000262189.6:c.7031C>T	p.Ser2344Phe	p.S2344F	ENST00000262189	NM_170606.2	2344	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151944989	151944989	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	20	137	0	ENST00000262189.6:c.2530C>G	p.Gln844Glu	p.Q844E	ENST00000262189	NM_170606.2	844	Cag/Gag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742016	145742016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	180	363	0	ENST00000428558.2:c.487C>T	p.Pro163Ser	p.P163S	ENST00000428558	NM_004260.3	163	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319890	8319890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	55	456	0	ENST00000356435.5:c.5611G>A	p.Asp1871Asn	p.D1871N	ENST00000356435		1871	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8375972	8375972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	74	592	0	ENST00000356435.5:c.4625A>G	p.Asn1542Ser	p.N1542S	ENST00000356435		1542	aAc/aGc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485905	8485905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	80	553	0	ENST00000356435.5:c.2912T>C	p.Leu971Pro	p.L971P	ENST00000356435		971	cTt/cCt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500757	8500757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	92	311	0	ENST00000356435.5:c.2125G>A	p.Asp709Asn	p.D709N	ENST00000356435		709	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	129	227	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	129	227	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87359899	87359899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	23	481	0	ENST00000277120.3:c.1207G>C	p.Ala403Pro	p.A403P	ENST00000277120		403	Gca/Cca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209264	98209264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	182	505	0	ENST00000331920.6:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000331920	NM_000264.3	1425	tCg/tTg																																																																														
RET	5979	MSKCC	GRCh37	10	43615101	43615101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	167	528	0	ENST00000355710.3:c.2515G>A	p.Asp839Asn	p.D839N	ENST00000355710	NM_020975.4	839	Gac/Aac																																																																														
TET1	80312	MSKCC	GRCh37	10	70404804	70404804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	84	406	1	ENST00000373644.4:c.2318C>T	p.Ser773Leu	p.S773L	ENST00000373644	NM_030625.2	773	tCa/tTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70451522	70451522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	99	534	0	ENST00000373644.4:c.6362C>T	p.Ser2121Phe	p.S2121F	ENST00000373644	NM_030625.2	2121	tCc/tTc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104352359	104352359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	130	491	0	ENST00000369902.3:c.475G>A	p.Asp159Asn	p.D159N	ENST00000369902	NM_016169.3	159	Gac/Aac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925598	114925598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	178	712	2	ENST00000543371.1:c.1676C>T	p.Pro559Leu	p.P559L	ENST00000543371	NM_001198531.1	559	cCc/cTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243282	123243282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	103	487	0	ENST00000358487.5:c.2231C>T	p.Pro744Leu	p.P744L	ENST00000358487	NM_000141.4	744	cCc/cTc																																																																														
PGR	5241	MSKCC	GRCh37	11	100922195	100922195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	48	659	0	ENST00000325455.5:c.2317G>A	p.Gly773Arg	p.G773R	ENST00000325455	NM_001202474.3	773	Ggg/Agg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195542	102195542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	51	716	0	ENST00000263464.3:c.302C>T	p.Ser101Phe	p.S101F	ENST00000263464	NM_001165.4	101	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352592	118352592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	73	571	0	ENST00000534358.1:c.3797C>T	p.Pro1266Leu	p.P1266L	ENST00000534358	NM_005933.3	1266	cCc/cTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402232	402232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	125	564	0	ENST00000399788.2:c.4559G>A	p.Gly1520Glu	p.G1520E	ENST00000399788	NM_001042603.1	1520	gGa/gAa																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037487	12037487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	130	336	0	ENST00000396373.4:c.1118C>T	p.Pro373Leu	p.P373L	ENST00000396373	NM_001987.4	373	cCc/cTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644429	18644429	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	56	467	0	ENST00000266497.5:c.2607A>C	p.Gln869His	p.Q869H	ENST00000266497		869	caA/caC																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18699293	18699293	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	63	507	0	ENST00000266497.5:c.3394C>T	p.Gln1132Ter	p.Q1132*	ENST00000266497		1132	Caa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793399	18793399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	77	513	0	ENST00000266497.5:c.4096G>A	p.Glu1366Lys	p.E1366K	ENST00000266497		1366	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	76	525	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433358	49433358	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	111	266	0	ENST00000301067.7:c.8089C>G	p.Arg2697Gly	p.R2697G	ENST00000301067	NM_003482.3	2697	Cgc/Ggc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438254	49438254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	160	444	0	ENST00000301067.7:c.5015C>T	p.Pro1672Leu	p.P1672L	ENST00000301067	NM_003482.3	1672	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443710	49443710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	177	510	0	ENST00000301067.7:c.3661C>T	p.Pro1221Ser	p.P1221S	ENST00000301067	NM_003482.3	1221	Cct/Tct																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416767	121416767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	154	447	0	ENST00000257555.6:c.196G>A	p.Glu66Lys	p.E66K	ENST00000257555		66	Gag/Aag																																																																														
FLT3	2322	MSKCC	GRCh37	13	28610098	28610098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	91	530	0	ENST00000241453.7:c.1392G>A	p.Trp464Ter	p.W464*	ENST00000241453	NM_004119.2	464	tgG/tgA																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001922	29001922	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	56	530	0	ENST00000282397.4:c.1243T>C	p.Phe415Leu	p.F415L	ENST00000282397	NM_002019.4	415	Ttt/Ctt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81558939	81558939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	66	387	1	ENST00000298171.2:c.532G>A	p.Glu178Lys	p.E178K	ENST00000298171	NM_000369.2	178	Gaa/Aaa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572480	95572480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	69	458	1	ENST00000343455.3:c.2885C>T	p.Ser962Phe	p.S962F	ENST00000343455	NM_177438.2	962	tCc/tTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42058306	42058306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	106	668	0	ENST00000219905.7:c.8026C>T	p.Pro2676Ser	p.P2676S	ENST00000219905	NM_001164273.1	2676	Cct/Tct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858615	9858615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	121	607	1	ENST00000330684.3:c.2786C>T	p.Ser929Phe	p.S929F	ENST00000330684	NM_001134407.1	929	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031882	10031882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	62	567	0	ENST00000330684.3:c.941C>T	p.Pro314Leu	p.P314L	ENST00000330684	NM_001134407.1	314	cCc/cTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346411	89346411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	234	576	2	ENST00000301030.4:c.6539C>T	p.Ser2180Phe	p.S2180F	ENST00000301030	NM_001256183.1	2180	tCc/tTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351259	89351259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	213	719	0	ENST00000301030.4:c.1691C>T	p.Ser564Phe	p.S564F	ENST00000301030	NM_001256183.1	564	tCt/tTt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89352506	89352506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	204	606	1	ENST00000301030.4:c.833C>A	p.Thr278Lys	p.T278K	ENST00000301030	NM_001256183.1	278	aCg/aAg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357487	89357487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	211	644	0	ENST00000301030.4:c.331C>T	p.Leu111Phe	p.L111F	ENST00000301030	NM_001256183.1	111	Ctc/Ttc																																																																														
NF1	4763	MSKCC	GRCh37	17	29541468	29541468	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	20	106	0	ENST00000358273.4:c.1393-1G>A		p.X465_splice	ENST00000358273	NM_001042492.2	465																																																																															
NF1	4763	MSKCC	GRCh37	17	29562628	29562628	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	93	475	0	ENST00000358273.4:c.3709-1G>A		p.X1237_splice	ENST00000358273	NM_001042492.2	1237																																																																															
CDK12	51755	MSKCC	GRCh37	17	37646923	37646923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	151	578	2	ENST00000447079.4:c.2045C>T	p.Pro682Leu	p.P682L	ENST00000447079	NM_015083.1	682	cCc/cTc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40481442	40481442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	154	644	0	ENST00000264657.5:c.1267C>G	p.Arg423Gly	p.R423G	ENST00000264657	NM_139276.2	423	Cga/Gga																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740467	58740467	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	106	656	0	ENST00000305921.3:c.1372C>T	p.Arg458Ter	p.R458*	ENST00000305921	NM_003620.3	458	Cga/Tga																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66511674	66511674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	86	457	0	ENST00000358598.2:c.134G>C	p.Arg45Thr	p.R45T	ENST00000358598	NM_212471.2	45	aGa/aCa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622407	1622407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	174	342	0	ENST00000344749.5:c.557C>T	p.Pro186Leu	p.P186L	ENST00000344749	NM_001136139.2	186	cCa/cTa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222278	2222278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	251	524	0	ENST00000398665.3:c.3110C>T	p.Pro1037Leu	p.P1037L	ENST00000398665	NM_032482.2	1037	cCt/cTt																																																																														
INSR	3643	MSKCC	GRCh37	19	7174716	7174716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	139	396	0	ENST00000302850.5:c.1001C>T	p.Pro334Leu	p.P334L	ENST00000302850	NM_000208.2	334	cCc/cTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7184355	7184355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	175	554	0	ENST00000302850.5:c.946C>T	p.Pro316Ser	p.P316S	ENST00000302850	NM_000208.2	316	Ccc/Tcc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281144	15281144	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	164	500	2	ENST00000263388.2:c.5112G>A	p.Met1704Ile	p.M1704I	ENST00000263388	NM_000435.2	1704	atG/atA																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281203	15281203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	192	518	2	ENST00000263388.2:c.5053G>A	p.Asp1685Asn	p.D1685N	ENST00000263388	NM_000435.2	1685	Gac/Aac																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523352	9523352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	64	450	0	ENST00000353224.5:c.1885C>T	p.Leu629Phe	p.L629F	ENST00000353224	NM_177990.2	629	Ctc/Ttc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546826	9546826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	62	333	0	ENST00000353224.5:c.1196C>T	p.Ser399Phe	p.S399F	ENST00000353224	NM_177990.2	399	tCc/tTc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39721218	39721218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	90	382	0	ENST00000361337.2:c.721T>C	p.Tyr241His	p.Y241H	ENST00000361337	NM_003286.2	241	Tat/Cat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747117	40747117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	115	477	0	ENST00000373198.4:c.2965G>A	p.Asp989Asn	p.D989N	ENST00000373198	NM_133170.3	989	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420032	41420032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	112	535	0	ENST00000373198.4:c.289G>A	p.Glu97Lys	p.E97K	ENST00000373198	NM_133170.3	97	Gag/Aag																																																																														
AURKA	6790	MSKCC	GRCh37	20	54958207	54958207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	118	381	0	ENST00000312783.6:c.400G>A	p.Glu134Lys	p.E134K	ENST00000312783	NM_198436.1	134	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231156	46231228	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTACAAAATGTCTAATGTCAAGGGATAGATTTTTAAAGATGAGAGGTGAGTTTTCACTGAAGTATTTACTTTC	TTACAAAATGTCTAATGTCAAGGGATAGATTTTTAAAGATGAGAGGTGAGTTTTCACTGAAGTATTTACTTTC	-			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	67	417	1	ENST00000334344.6:c.1077_1120+29del		p.X359_splice	ENST00000334344	NM_152641.2	359																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5273568	5273569	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0005228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	161	399	0	ENST00000357368.4:c.263_264delinsA	p.Gly88GlufsTer4	p.G88Efs*4	ENST00000357368	NM_002850.3	88	gGG/gA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0005232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	67	95	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	158	170	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790690	89790690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	225	419	0	ENST00000336032.3:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000336032	NM_006813.2	26	cGa/cAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367318	50367318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	163	302	2	ENST00000331340.3:c.125G>T	p.Gly42Val	p.G42V	ENST00000331340	NM_006060.4	42	gGa/gTa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961225	41961225	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	224	557	1	ENST00000219905.7:c.133C>T	p.Gln45Ter	p.Q45*	ENST00000219905	NM_001164273.1	45	Cag/Tag																																																																														
MGA	23269	MSKCC	GRCh37	15	41961591	41961591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	229	574	0	ENST00000219905.7:c.499C>G	p.His167Asp	p.H167D	ENST00000219905	NM_001164273.1	167	Cat/Gat																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663425	67663425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	171	401	0	ENST00000264010.4:c.1826C>T	p.Ser609Phe	p.S609F	ENST00000264010	NM_006565.3	609	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630479	187630480	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0005232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	155	443	1	ENST00000441802.2:c.502_503del	p.Ile168ArgfsTer21	p.I168Rfs*21	ENST00000441802	NM_005245.3	168	ATc/c																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	77	463	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0005260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	13	152	0				ENST00000310581	NM_198253.2																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212566827	212566827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	92	475	0	ENST00000342788.4:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000342788	NM_005235.2	452	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120360	94120360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	118	661	0	ENST00000369303.4:c.691C>T	p.Arg231Ter	p.R231*	ENST00000369303	NM_004440.3	231	Cga/Tga																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553653	106553653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	49	432	4	ENST00000369096.4:c.1618G>A	p.Ala540Thr	p.A540T	ENST00000369096	NM_001198.3	540	Gcc/Acc																																																																														
RAB35	11021	MSKCC	GRCh37	12	120541715	120541715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	32	662	1	ENST00000229340.5:c.142C>T	p.Arg48Trp	p.R48W	ENST00000229340	NM_006861.6	48	Cgg/Tgg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7989448	7989448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	24	465	0	ENST00000319144.4:c.238G>A	p.Asp80Asn	p.D80N	ENST00000319144	NM_001139.2	80	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733280	40733280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	51	445	0	ENST00000373198.4:c.3526C>T	p.Arg1176Cys	p.R1176C	ENST00000373198	NM_133170.3	1176	Cgt/Tgt																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815572	139815573	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0005260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	28	662	0	ENST00000247668.2:c.1043_1044del	p.Ser348TyrfsTer71	p.S348Yfs*71	ENST00000247668	NM_021138.3	348	tCC/t																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711875	89711899	+	stop_gained,frameshift_variant,splice_region_variant	Nonsense_Mutation	DEL	GGAGTAACTATTCCCAGTCAGAGGC	GGAGTAACTATTCCCAGTCAGAGGC	TA			P-0005260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	59	371	0	ENST00000371953.3:c.493_517delinsTA	p.Gly165Ter	p.G165*	ENST00000371953	NM_000314.4	165	GGAGTAACTATTCCCAGTCAGAGGCgc/TAgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971188	21971190	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	AA			P-0005260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	59	186	0	ENST00000304494.5:c.168_170delinsTT	p.Ala57SerfsTer89	p.A57Sfs*89	ENST00000304494	NM_000077.4	56	agCGCc/agTTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971188	21971190	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	AA			P-0005260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	59	186	0	ENST00000304494.5:c.168_170delinsTT	p.Ala57SerfsTer89	p.A57Sfs*89	ENST00000304494	NM_000077.4	56	agCGCc/agTTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971188	21971190	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	AA			P-0005260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	59	186	0	ENST00000304494.5:c.168_170delinsTT	p.Ala57SerfsTer89	p.A57Sfs*89	ENST00000304494	NM_000077.4	56	agCGCc/agTTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	28	253	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	49	208	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162737119	162737119	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	45	434	0	ENST00000367921.3:c.1263G>C	p.Trp421Cys	p.W421C	ENST00000367921	NM_006182.2	421	tgG/tgC																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52675997	52675997	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	56	433	0	ENST00000394830.3:c.1060G>C	p.Glu354Gln	p.E354Q	ENST00000394830	NM_018313.4	354	Gaa/Caa																																																																														
AKT1	207	MSKCC	GRCh37	14	105243010	105243010	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	67	374	0	ENST00000349310.3:c.273G>C	p.Glu91Asp	p.E91D	ENST00000349310	NM_001014432.1	91	gaG/gaC																																																																														
AKT1	207	MSKCC	GRCh37	14	105243094	105243094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	46	363	0	ENST00000349310.3:c.189G>A	p.Met63Ile	p.M63I	ENST00000349310	NM_001014432.1	63	atG/atA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057961	27057962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	78	284	0	ENST00000324856.7:c.1670dup	p.Ser558ValfsTer65	p.S558Vfs*65	ENST00000324856	NM_006015.4	557	cag/cAag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006805	47006806	+	5_prime_UTR_variant	5'UTR	INS	-	-	G			P-0005263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	88	435	0	ENST00000329236.7:c.-71dup		p.*24*	ENST00000329236	NM_001204466.1																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	33	251	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0005293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	211	590	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20148727	20148727	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0005293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	163	541	0	ENST00000379607.5:c.338-2A>T		p.X113_splice	ENST00000379607	NM_001412.3	113																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	18	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	52	238	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	71	130	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	12	478	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	110	550	0	ENST00000358487.5:c.1647T>G	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaG																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923035	44923035	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	149	202	0	ENST00000377967.4:c.1896G>A	p.Trp632Ter	p.W632*	ENST00000377967	NM_021140.2	632	tgG/tgA																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175957470	175957470	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	126	506	0	ENST00000367669.3:c.1926A>C	p.Glu642Asp	p.E642D	ENST00000367669	NM_022457.5	642	gaA/gaC																																																																														
CASP8	841	MSKCC	GRCh37	2	202131303	202131303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	93	463	1	ENST00000358485.4:c.271C>T	p.Gln91Ter	p.Q91*	ENST00000358485	NM_001080125.1	91	Caa/Taa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662172	227662172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	187	515	0	ENST00000305123.5:c.1283C>T	p.Ser428Leu	p.S428L	ENST00000305123	NM_005544.2	428	tCg/tTg																																																																														
ATR	545	MSKCC	GRCh37	3	142231104	142231104	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	91	278	0	ENST00000350721.4:c.4850T>A	p.Met1617Lys	p.M1617K	ENST00000350721	NM_001184.3	1617	aTg/aAg																																																																														
ATR	545	MSKCC	GRCh37	3	142241574	142241574	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	70	337	0	ENST00000350721.4:c.4262T>G	p.Ile1421Ser	p.I1421S	ENST00000350721	NM_001184.3	1421	aTt/aGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55602775	55602775	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	47	351	1	ENST00000288135.5:c.2596G>C	p.Gly866Arg	p.G866R	ENST00000288135	NM_000222.2	866	Gga/Cga																																																																														
APC	324	MSKCC	GRCh37	5	112178680	112178680	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	88	435	0	ENST00000257430.4:c.7389A>T	p.Glu2463Asp	p.E2463D	ENST00000257430	NM_000038.5	2463	gaA/gaT																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056316	180056316	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	132	645	2	ENST00000261937.6:c.928T>C	p.Cys310Arg	p.C310R	ENST00000261937	NM_182925.4	310	Tgc/Cgc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651906	36651906	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	135	328	0	ENST00000244741.5:c.28C>T	p.Gln10Ter	p.Q10*	ENST00000244741	NM_000389.4	10	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453139	140453139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	107	377	1	ENST00000288602.6:c.1796C>T	p.Thr599Ile	p.T599I	ENST00000288602	NM_004333.4	599	aCa/aTa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117875482	117875482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	25	675	0	ENST00000297338.2:c.161G>T	p.Arg54Leu	p.R54L	ENST00000297338	NM_006265.2	54	cGg/cTg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80646099	80646099	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			25	13	33	0	ENST00000286548.4:c.53C>G	p.Ala18Gly	p.A18G	ENST00000286548	NM_002072.3	18	gCc/gGc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589794	69589794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	12	64	0	ENST00000168712.1:c.59T>C	p.Leu20Pro	p.L20P	ENST00000168712	NM_002007.2	20	cTg/cCg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243430	46243430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	99	509	0	ENST00000334344.6:c.1783C>T	p.His595Tyr	p.H595Y	ENST00000334344	NM_152641.2	595	Cat/Tat																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118949	115118949	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	68	231	0	ENST00000257566.3:c.392G>A	p.Arg131Gln	p.R131Q	ENST00000257566	NM_016569.3	131	cGa/cAa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060652	38060652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	253	645	0	ENST00000250448.2:c.1337C>T	p.Thr446Ile	p.T446I	ENST00000250448	NM_004496.3	446	aCc/aTc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641282	23641282	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	73	424	0	ENST00000261584.4:c.2193A>C	p.Leu731Phe	p.L731F	ENST00000261584	NM_024675.3	731	ttA/ttC																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81971404	81971404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	172	545	0	ENST00000359376.3:c.3094G>C	p.Gly1032Arg	p.G1032R	ENST00000359376	NM_002661.3	1032	Ggg/Cgg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15960988	15960988	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	129	521	0	ENST00000268712.3:c.6232A>C	p.Thr2078Pro	p.T2078P	ENST00000268712	NM_006311.3	2078	Act/Cct																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864639	37864639	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	183	511	0	ENST00000269571.5:c.291G>C	p.Gln97His	p.Q97H	ENST00000269571		97	caG/caC																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492784	56492784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	110	438	0	ENST00000407977.2:c.155C>T	p.Pro52Leu	p.P52L	ENST00000407977		52	cCc/cTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533036	63533036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	31	512	0	ENST00000307078.5:c.1858T>C	p.Trp620Arg	p.W620R	ENST00000307078	NM_004655.3	620	Tgg/Cgg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207153	1207153	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	115	440	0	ENST00000326873.7:c.241A>C	p.Lys81Gln	p.K81Q	ENST00000326873	NM_000455.4	81	Aag/Cag																																																																														
STK11	6794	MSKCC	GRCh37	19	1207159	1207159	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	116	423	0	ENST00000326873.7:c.247A>G	p.Lys83Glu	p.K83E	ENST00000326873	NM_000455.4	83	Aag/Gag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856356	45856356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	199	533	0	ENST00000391945.4:c.1816G>C	p.Glu606Gln	p.E606Q	ENST00000391945	NM_000400.3	606	Gag/Cag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523292	9523292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	136	482	0	ENST00000353224.5:c.1945C>G	p.Leu649Val	p.L649V	ENST00000353224	NM_177990.2	649	Ctc/Gtc																																																																														
CRKL	1399	MSKCC	GRCh37	22	21272281	21272281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	124	348	0	ENST00000354336.3:c.59C>T	p.Ser20Phe	p.S20F	ENST00000354336	NM_005207.3	20	tCt/tTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937891	76937891	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	72	240	0	ENST00000373344.5:c.2857A>C	p.Thr953Pro	p.T953P	ENST00000373344	NM_000489.3	953	Aca/Cca																																																																														
MGA	23269	MSKCC	GRCh37	15	42005513	42005535	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAAGAAAAGTTGTACTTGTTA	GAAAAGAAAAGTTGTACTTGTTA	-			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	151	765	3	ENST00000219905.7:c.3249_3271del	p.Lys1084ArgfsTer6	p.K1084Rfs*6	ENST00000219905	NM_001164273.1	1083	ttGAAAAGAAAAGTTGTACTTGTTAaa/ttaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230670	46230671	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	118	535	0	ENST00000334344.6:c.920dup	p.Ala308SerfsTer2	p.A308Sfs*2	ENST00000334344	NM_152641.2	307	gca/gCca																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	121	282	2	ENST00000346208.3:c.708dupC	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																																																														
CALR	811	MSKCC	GRCh37	19	13050410	13050425	+	frameshift_variant	Frame_Shift_Del	DEL	ACATGCACGGAGACTC	ACATGCACGGAGACTC	-			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	45	695	0	ENST00000316448.5:c.363_378del	p.Asp121GlufsTer31	p.D121Efs*31	ENST00000316448	NM_004343.3	121	gACATGCACGGAGACTCa/ga																																																																														
MGA	23269	MSKCC	GRCh37	15	42000019	42000020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	124	722	0	ENST00000219905.7:c.2287dup	p.Trp763LeufsTer12	p.W763Lfs*12	ENST00000219905	NM_001164273.1	761	cct/ccTt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31385045	31385046	+	missense_variant	Missense_Mutation	DNP	AC	AC	TG			P-0005359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	166	469	0	ENST00000328111.2:c.1430_1431delinsTG	p.Tyr477Leu	p.Y477L	ENST00000328111	NM_006892.3	477	tAC/tTG																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171657	36171657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	264	558	0	ENST00000300305.3:c.908C>T	p.Ser303Leu	p.S303L	ENST00000300305		303	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	139	268	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	393	683	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	269	564	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	218	419	1	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95583017	95583017	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	77	274	0	ENST00000343455.3:c.1525C>T	p.Arg509Ter	p.R509*	ENST00000343455	NM_177438.2	509	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	218	437	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860254	151860254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	319	709	0	ENST00000262189.6:c.10408C>T	p.Gln3470Ter	p.Q3470*	ENST00000262189	NM_170606.2	3470	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29592251	29592251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	116	433	1	ENST00000358273.4:c.4729C>T	p.Gln1577Ter	p.Q1577*	ENST00000358273	NM_001042492.2	1577	Cag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244872	46244872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	316	686	0	ENST00000334344.6:c.2966C>T	p.Ser989Leu	p.S989L	ENST00000334344	NM_152641.2	989	tCg/tTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28592680	28592680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	115	618	2	ENST00000241453.7:c.2465G>A	p.Gly822Glu	p.G822E	ENST00000241453	NM_004119.2	822	gGg/gAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344210	118344210	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201960342		P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	192	341	0	ENST00000534358.1:c.2336C>T	p.Ser779Leu	p.S779L	ENST00000534358	NM_005933.3	779	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108168019	108168019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	217	356	0	ENST00000278616.4:c.4915C>T	p.Pro1639Ser	p.P1639S	ENST00000278616	NM_000051.3	1639	Ccg/Tcg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509235	106509235	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	524	629	0	ENST00000359195.3:c.1229G>A	p.Trp410Ter	p.W410*	ENST00000359195	NM_002649.2	410	tGg/tAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341196	8341196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	148	576	1	ENST00000356435.5:c.5020C>T	p.Arg1674Cys	p.R1674C	ENST00000356435		1674	Cgc/Tgc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747879	41747879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	129	490	0	ENST00000226382.2:c.890C>T	p.Ser297Leu	p.S297L	ENST00000226382	NM_003924.3	297	tCg/tTg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321372	1321372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	253	537	4	ENST00000381566.1:c.383C>T	p.Ser128Leu	p.S128L	ENST00000381566		128	tCg/tTg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729949	41729949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	590	911	1	ENST00000242208.4:c.580G>A	p.Glu194Lys	p.E194K	ENST00000242208	NM_002192.2	194	Gaa/Aaa																																																																														
RARA	5914	MSKCC	GRCh37	17	38508290	38508290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	124	609	0	ENST00000254066.5:c.598C>T	p.Pro200Ser	p.P200S	ENST00000254066	NM_000964.3	200	Cct/Tct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199342	16199342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	346	705	0	ENST00000375759.3:c.115C>T	p.Pro39Ser	p.P39S	ENST00000375759	NM_015001.2	39	Ccc/Tcc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16247393	16247393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	205	530	0	ENST00000375759.3:c.1664C>T	p.Ala555Val	p.A555V	ENST00000375759	NM_015001.2	555	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107174	27107174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	215	353	0	ENST00000324856.7:c.6785C>T	p.Ser2262Leu	p.S2262L	ENST00000324856	NM_006015.4	2262	tCg/tTg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937211	36937211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	217	826	0	ENST00000361632.4:c.1108G>A	p.Gly370Ser	p.G370S	ENST00000361632		370	Ggt/Agt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797519	45797519	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	133	549	0	ENST00000372115.3:c.958C>T	p.Pro320Ser	p.P320S	ENST00000372115	NM_001048171.1	320	Ccc/Tcc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076796	72076796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	300	619	2	ENST00000357731.5:c.701C>T	p.Thr234Ile	p.T234I	ENST00000357731	NM_173808.2	234	aCc/aTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120471724	120471724	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	269	570	0	ENST00000256646.2:c.3767T>A	p.Phe1256Tyr	p.F1256Y	ENST00000256646	NM_024408.3	1256	tTt/tAt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120484374	120484374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	196	416	0	ENST00000256646.2:c.2756C>T	p.Pro919Leu	p.P919L	ENST00000256646	NM_024408.3	919	cCt/cTt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843734	156843734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	307	694	2	ENST00000524377.1:c.1160C>T	p.Pro387Leu	p.P387L	ENST00000524377	NM_002529.3	387	cCc/cTc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740290	162740290	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	196	332	1	ENST00000367921.3:c.1492G>T	p.Glu498Ter	p.E498*	ENST00000367921	NM_006182.2	498	Gag/Tag																																																																														
CDC73	79577	MSKCC	GRCh37	1	193099331	193099331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	226	450	0	ENST00000367435.3:c.265C>T	p.Pro89Ser	p.P89S	ENST00000367435	NM_024529.4	89	Cct/Tct																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666444	206666444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	342	401	0	ENST00000367120.3:c.1924C>T	p.Leu642Phe	p.L642F	ENST00000367120	NM_014002.3	642	Ctc/Ttc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666674	206666674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	376	522	0	ENST00000367120.3:c.2008C>T	p.Pro670Ser	p.P670S	ENST00000367120	NM_014002.3	670	Cct/Tct																																																																														
ALK	238	MSKCC	GRCh37	2	29462610	29462610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	147	639	0	ENST00000389048.3:c.2291A>G	p.Asn764Ser	p.N764S	ENST00000389048	NM_004304.4	764	aAc/aGc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570052	212570052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	223	471	0	ENST00000342788.4:c.1189G>A	p.Glu397Lys	p.E397K	ENST00000342788	NM_005235.2	397	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570054	212570054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	202	478	0	ENST00000342788.4:c.1187G>A	p.Arg396Lys	p.R396K	ENST00000342788	NM_005235.2	396	aGa/aAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812235	212812235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	242	502	2	ENST00000342788.4:c.341G>A	p.Arg114Gln	p.R114Q	ENST00000342788	NM_005235.2	114	cGa/cAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812335	212812335	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	189	387	1	ENST00000342788.4:c.241C>T	p.Arg81Ter	p.R81*	ENST00000342788	NM_005235.2	81	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713514	30713514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	231	480	0	ENST00000359013.4:c.914C>T	p.Pro305Leu	p.P305L	ENST00000359013	NM_001024847.2	305	cCc/cTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164832	47164832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	244	501	1	ENST00000409792.3:c.1294C>T	p.Arg432Cys	p.R432C	ENST00000409792	NM_014159.6	432	Cgt/Tgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164873	47164873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	231	489	2	ENST00000409792.3:c.1253C>T	p.Ser418Phe	p.S418F	ENST00000409792	NM_014159.6	418	tCc/tTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165057	47165057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	227	418	1	ENST00000409792.3:c.1069C>T	p.Pro357Ser	p.P357S	ENST00000409792	NM_014159.6	357	Cct/Tct																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498375	89498375	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	203	436	0	ENST00000336596.2:c.2347G>A	p.Gly783Arg	p.G783R	ENST00000336596	NM_005233.5	783	Gga/Aga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960038	134960038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	258	585	2	ENST00000398015.3:c.2395C>T	p.Arg799Cys	p.R799C	ENST00000398015	NM_004441.4	799	Cgc/Tgc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138453507	138453507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	157	612	1	ENST00000289153.2:c.941C>T	p.Pro314Leu	p.P314L	ENST00000289153	NM_006219.2	314	cCa/cTa																																																																														
ATR	545	MSKCC	GRCh37	3	142281895	142281895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	184	371	1	ENST00000350721.4:c.349C>T	p.His117Tyr	p.H117Y	ENST00000350721	NM_001184.3	117	Cat/Tat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928318	178928318	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	226	451	0	ENST00000263967.3:c.1504C>T	p.Arg502Ter	p.R502*	ENST00000263967	NM_006218.2	502	Cga/Tga																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146487	185146487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	139	512	0	ENST00000265026.3:c.118C>T	p.Pro40Ser	p.P40S	ENST00000265026	NM_004721.4	40	Ccc/Tcc																																																																														
BCL6	604	MSKCC	GRCh37	3	187449654	187449654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	174	581	2	ENST00000232014.4:c.226C>T	p.Pro76Ser	p.P76S	ENST00000232014	NM_001130845.1	76	Cct/Tct																																																																														
TP63	8626	MSKCC	GRCh37	3	189586442	189586442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	227	538	1	ENST00000264731.3:c.1066G>A	p.Glu356Lys	p.E356K	ENST00000264731	NM_003722.4	356	Gaa/Aaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1795723	1795723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	99	308	0	ENST00000260795.2:c.62C>T	p.Ser21Phe	p.S21F	ENST00000260795		21	tCc/tTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151558	55151558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	275	540	1	ENST00000257290.5:c.2344C>T	p.Leu782Phe	p.L782F	ENST00000257290	NM_006206.4	782	Ctt/Ttt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152108	55152108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	313	588	0	ENST00000257290.5:c.2540C>T	p.Ser847Leu	p.S847L	ENST00000257290	NM_006206.4	847	tCg/tTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55976861	55976861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	300	547	0	ENST00000263923.4:c.1051C>T	p.Pro351Ser	p.P351S	ENST00000263923	NM_002253.2	351	Cct/Tct																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332853	153332853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	228	457	0	ENST00000281708.4:c.103C>T	p.Arg35Cys	p.R35C	ENST00000281708	NM_033632.3	35	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542804	187542804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	298	609	1	ENST00000441802.2:c.4936C>T	p.Pro1646Ser	p.P1646S	ENST00000441802	NM_005245.3	1646	Cca/Tca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628110	187628110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	306	629	3	ENST00000441802.2:c.2872C>T	p.Gln958Ter	p.Q958*	ENST00000441802	NM_005245.3	958	Cag/Tag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35861023	35861023	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138482569		P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	318	546	0	ENST00000303115.3:c.152C>T	p.Ser51Leu	p.S51L	ENST00000303115	NM_002185.3	51	tCg/tTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945785	38945785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	187	443	0	ENST00000357387.3:c.4441C>T	p.His1481Tyr	p.H1481Y	ENST00000357387	NM_152756.3	1481	Cac/Tac																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519328	176519328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	148	299	0	ENST00000292408.4:c.734C>T	p.Ser245Phe	p.S245F	ENST00000292408	NM_213647.1	245	tCc/tTc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056287	180056287	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	324	627	0	ENST00000261937.6:c.957T>G	p.Phe319Leu	p.F319L	ENST00000261937	NM_182925.4	319	ttT/ttG																																																																														
IRF4	3662	MSKCC	GRCh37	6	401508	401508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	127	490	0	ENST00000380956.4:c.830C>T	p.Ser277Phe	p.S277F	ENST00000380956	NM_001195286.1	277	tCc/tTc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20480133	20480133	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	169	653	0	ENST00000346618.3:c.450A>T	p.Leu150Phe	p.L150F	ENST00000346618	NM_001949.4	150	ttA/ttT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673130	30673130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	190	332	0	ENST00000376406.3:c.3830C>T	p.Ser1277Phe	p.S1277F	ENST00000376406	NM_014641.2	1277	tCt/tTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163318	32163318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	235	718	0	ENST00000375023.3:c.5908C>T	p.Pro1970Ser	p.P1970S	ENST00000375023	NM_004557.3	1970	Cct/Tct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955086	93955086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	181	773	1	ENST00000369303.4:c.2812G>A	p.Glu938Lys	p.E938K	ENST00000369303	NM_004440.3	938	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066501	94066501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	202	890	2	ENST00000369303.4:c.1258G>A	p.Gly420Arg	p.G420R	ENST00000369303	NM_004440.3	420	Gga/Aga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120326	94120326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	176	690	4	ENST00000369303.4:c.725C>T	p.Ala242Val	p.A242V	ENST00000369303	NM_004440.3	242	gCg/gTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120845	94120845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	412	854	0	ENST00000369303.4:c.206G>A	p.Arg69Gln	p.R69Q	ENST00000369303	NM_004440.3	69	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662342	117662342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	266	488	0	ENST00000368508.3:c.5035C>T	p.Pro1679Ser	p.P1679S	ENST00000368508	NM_002944.2	1679	Cca/Tca																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468168	50468168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	227	486	0	ENST00000331340.3:c.1403G>A	p.Arg468Gln	p.R468Q	ENST00000331340	NM_006060.4	468	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140494214	140494214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	344	709	0	ENST00000288602.6:c.1034C>T	p.Pro345Leu	p.P345L	ENST00000288602	NM_004333.4	345	cCc/cTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878271	151878271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	429	569	0	ENST00000262189.6:c.6674C>T	p.Pro2225Leu	p.P2225L	ENST00000262189	NM_170606.2	2225	cCa/cTa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372497	55372497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	286	518	0	ENST00000297316.4:c.1187C>T	p.Ser396Phe	p.S396F	ENST00000297316	NM_022454.3	396	tCc/tTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341914	8341914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	246	529	0	ENST00000356435.5:c.4726G>A	p.Glu1576Lys	p.E1576K	ENST00000356435		1576	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8375935	8375935	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	211	470	1	ENST00000356435.5:c.4661+1G>A		p.X1554_splice	ENST00000356435		1554																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8375967	8375967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	269	587	1	ENST00000356435.5:c.4630C>T	p.Pro1544Ser	p.P1544S	ENST00000356435		1544	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518034	8518034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	255	636	1	ENST00000356435.5:c.1357G>A	p.Val453Ile	p.V453I	ENST00000356435		453	Gtt/Att																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8527351	8527351	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	240	427	0	ENST00000356435.5:c.544T>G	p.Ser182Ala	p.S182A	ENST00000356435		182	Tct/Gct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971018	21971018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	282	389	1	ENST00000304494.5:c.340C>T	p.Pro114Ser	p.P114S	ENST00000304494	NM_000077.4	114	Ccc/Tcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971018	21971018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	282	389	1	ENST00000304494.5:c.340C>T	p.Pro114Ser	p.P114S	ENST00000304494	NM_000077.4	114	Ccc/Tcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971018	21971018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	282	389	1	ENST00000304494.5:c.340C>T	p.Pro114Ser	p.P114S	ENST00000304494	NM_000077.4	114	Ccc/Tcc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231296	98231296	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	116	412	0	ENST00000331920.6:c.1987C>T	p.Gln663Ter	p.Q663*	ENST00000331920	NM_000264.3	663	Cag/Tag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100426	8100426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	310	573	0	ENST00000346208.3:c.400C>T	p.Pro134Ser	p.P134S	ENST00000346208		134	Ccc/Tcc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63816982	63816982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	207	490	0	ENST00000279873.7:c.953G>A	p.Arg318Lys	p.R318K	ENST00000279873	NM_032199.2	318	aGg/aAg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852319	63852319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	275	480	0	ENST00000279873.7:c.3097C>T	p.Pro1033Ser	p.P1033S	ENST00000279873	NM_032199.2	1033	Ccc/Tcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711993	89711993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	159	217	0	ENST00000371953.3:c.611C>T	p.Pro204Leu	p.P204L	ENST00000371953	NM_000314.4	204	cCa/cTa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123256067	123256067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	321	709	0	ENST00000358487.5:c.1842G>A	p.Met614Ile	p.M614I	ENST00000358487	NM_000141.4	614	atG/atA																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123276902	123276902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	304	558	0	ENST00000358487.5:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000358487	NM_000141.4	339	Gaa/Aaa																																																																														
PGR	5241	MSKCC	GRCh37	11	100909854	100909854	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	169	382	0	ENST00000325455.5:c.2795A>G	p.Lys932Arg	p.K932R	ENST00000325455	NM_001202474.3	932	aAa/aGa																																																																														
PGR	5241	MSKCC	GRCh37	11	100920685	100920685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	377	706	0	ENST00000325455.5:c.2463G>A	p.Met821Ile	p.M821I	ENST00000325455	NM_001202474.3	821	atG/atA																																																																														
PGR	5241	MSKCC	GRCh37	11	100922293	100922293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149186732		P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	336	601	0	ENST00000325455.5:c.2219G>A	p.Arg740Gln	p.R740Q	ENST00000325455	NM_001202474.3	740	cGa/cAa																																																																														
CBL	867	MSKCC	GRCh37	11	119170460	119170460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	181	383	2	ENST00000264033.4:c.2690C>T	p.Ser897Phe	p.S897F	ENST00000264033	NM_005188.3	897	tCc/tTc																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992110	11992110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	215	435	1	ENST00000396373.4:c.200C>T	p.Ala67Val	p.A67V	ENST00000396373	NM_001987.4	67	gCc/gTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435469	18435469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	190	454	0	ENST00000266497.5:c.454G>A	p.Asp152Asn	p.D152N	ENST00000266497		152	Gat/Aat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18473956	18473956	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	92	465	0	ENST00000266497.5:c.1198A>T	p.Lys400Ter	p.K400*	ENST00000266497		400	Aaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691178	18691178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	208	536	0	ENST00000266497.5:c.3289G>A	p.Glu1097Lys	p.E1097K	ENST00000266497		1097	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800915	18800915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	251	596	0	ENST00000266497.5:c.4291C>T	p.Pro1431Ser	p.P1431S	ENST00000266497		1431	Cca/Tca																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945093	31945093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	218	467	0	ENST00000340398.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000340398	NM_001013699.2	3	cGa/cAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46254648	46254648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	376	679	0	ENST00000334344.6:c.4838C>T	p.Ser1613Phe	p.S1613F	ENST00000334344	NM_152641.2	1613	tCt/tTt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57857533	57857533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	468	624	1	ENST00000228682.2:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000228682	NM_005269.2	20	cGg/cAg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57857808	57857808	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	503	730	0	ENST00000228682.2:c.127C>T	p.Gln43Ter	p.Q43*	ENST00000228682	NM_005269.2	43	Caa/Taa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864555	57864555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	537	804	0	ENST00000228682.2:c.2032C>T	p.Pro678Ser	p.P678S	ENST00000228682	NM_005269.2	678	Cct/Tct																																																																														
TBX3	6926	MSKCC	GRCh37	12	115111971	115111971	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	76	275	0	ENST00000257566.3:c.1769A>C	p.Gln590Pro	p.Q590P	ENST00000257566	NM_016569.3	590	cAg/cCg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434154	121434154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	225	568	0	ENST00000257555.6:c.1045C>T	p.His349Tyr	p.H349Y	ENST00000257555		349	Cac/Tac																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434164	121434164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	199	553	0	ENST00000257555.6:c.1055C>T	p.Ser352Phe	p.S352F	ENST00000257555		352	tCc/tTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133209315	133209315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	229	593	0	ENST00000320574.5:c.6071C>T	p.Pro2024Leu	p.P2024L	ENST00000320574	NM_006231.2	2024	cCc/cTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133240618	133240618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	296	623	1	ENST00000320574.5:c.2678C>T	p.Pro893Leu	p.P893L	ENST00000320574	NM_006231.2	893	cCa/cTa																																																																														
POLE	5426	MSKCC	GRCh37	12	133245062	133245062	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116326665		P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	169	356	0	ENST00000320574.5:c.2053C>T	p.Arg685Trp	p.R685W	ENST00000320574	NM_006231.2	685	Cgg/Tgg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28963953	28963953	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	120	626	1	ENST00000282397.4:c.1949A>T	p.Lys650Met	p.K650M	ENST00000282397	NM_002019.4	650	aAg/aTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914949	32914949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	230	892	0	ENST00000380152.3:c.6457C>T	p.Pro2153Ser	p.P2153S	ENST00000380152		2153	Cca/Tca																																																																														
DIS3	22894	MSKCC	GRCh37	13	73351584	73351584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	139	571	0	ENST00000377767.4:c.628C>T	p.Arg210Cys	p.R210C	ENST00000377767	NM_014953.3	210	Cgt/Tgt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554350	81554350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	460	613	0	ENST00000298171.2:c.370G>A	p.Glu124Lys	p.E124K	ENST00000298171	NM_000369.2	124	Gag/Aag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574813	95574813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	120	479	1	ENST00000343455.3:c.2284C>T	p.Pro762Ser	p.P762S	ENST00000343455	NM_177438.2	762	Ccc/Tcc																																																																														
MGA	23269	MSKCC	GRCh37	15	41988752	41988752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	484	892	0	ENST00000219905.7:c.1544C>T	p.Ser515Phe	p.S515F	ENST00000219905	NM_001164273.1	515	tCc/tTc																																																																														
MGA	23269	MSKCC	GRCh37	15	41991076	41991076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	322	608	0	ENST00000219905.7:c.2029C>T	p.His677Tyr	p.H677Y	ENST00000219905	NM_001164273.1	677	Cat/Tat																																																																														
MGA	23269	MSKCC	GRCh37	15	42028529	42028529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	502	909	3	ENST00000219905.7:c.4067C>T	p.Ser1356Phe	p.S1356F	ENST00000219905	NM_001164273.1	1356	tCc/tTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88428945	88428945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	256	481	0	ENST00000360948.2:c.2155G>A	p.Asp719Asn	p.D719N	ENST00000360948	NM_001012338.2	719	Gat/Aat																																																																														
BLM	641	MSKCC	GRCh37	15	91337538	91337538	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	148	458	0	ENST00000355112.3:c.3161T>A	p.Phe1054Tyr	p.F1054Y	ENST00000355112	NM_000057.2	1054	tTt/tAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779191	3779191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	113	239	0	ENST00000262367.5:c.5857C>T	p.Pro1953Ser	p.P1953S	ENST00000262367	NM_004380.2	1953	Cct/Tct																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786758	3786758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	366	699	0	ENST00000262367.5:c.4453C>T	p.His1485Tyr	p.H1485Y	ENST00000262367	NM_004380.2	1485	Cat/Tat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900356	3900356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	343	561	2	ENST00000262367.5:c.740C>T	p.Ser247Phe	p.S247F	ENST00000262367	NM_004380.2	247	tCc/tTc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7978979	7978979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	291	623	0	ENST00000319144.4:c.1588G>A	p.Asp530Asn	p.D530N	ENST00000319144	NM_001139.2	530	Gat/Aat																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687306	37687306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	149	558	0	ENST00000447079.4:c.4210C>T	p.Arg1404Cys	p.R1404C	ENST00000447079	NM_015083.1	1404	Cgt/Tgt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881024	37881024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	517	569	0	ENST00000269571.5:c.2353C>T	p.Leu785Phe	p.L785F	ENST00000269571		785	Ctt/Ttt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369273	40369273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	216	848	3	ENST00000293328.3:c.1285C>T	p.Arg429Cys	p.R429C	ENST00000293328	NM_012448.3	429	Cgt/Tgt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40376844	40376844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1214	295	1122	1	ENST00000293328.3:c.328C>T	p.Arg110Cys	p.R110C	ENST00000293328	NM_012448.3	110	Cgc/Tgc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58701074	58701074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	824	1079	1	ENST00000305921.3:c.665C>T	p.Pro222Leu	p.P222L	ENST00000305921	NM_003620.3	222	cCc/cTc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120026	70120026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	13	46	0	ENST00000245479.2:c.1028C>T	p.Pro343Leu	p.P343L	ENST00000245479	NM_000346.3	343	cCg/cTg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936290	78936290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	171	674	1	ENST00000306801.3:c.3722C>T	p.Pro1241Leu	p.P1241L	ENST00000306801	NM_020761.2	1241	cCc/cTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098480	11098480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	153	277	1	ENST00000344626.4:c.998C>T	p.Pro333Leu	p.P333L	ENST00000344626	NM_003072.3	333	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296353	15296353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	234	539	0	ENST00000263388.2:c.2089C>T	p.His697Tyr	p.H697Y	ENST00000263388	NM_000435.2	697	Cat/Tat																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273857	18273857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	335	693	0	ENST00000222254.8:c.1190C>T	p.Ser397Phe	p.S397F	ENST00000222254	NM_005027.3	397	tCc/tTc																																																																														
AXL	558	MSKCC	GRCh37	19	41765783	41765783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	123	242	0	ENST00000301178.4:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000301178	NM_021913.4	887	Gcc/Acc																																																																														
CIC	23152	MSKCC	GRCh37	19	42799020	42799020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	285	484	0	ENST00000575354.2:c.4504C>T	p.Pro1502Ser	p.P1502S	ENST00000575354	NM_015125.3	1502	Ccc/Tcc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45873796	45873796	+	start_lost,splice_region_variant	Translation_Start_Site	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	94	362	0	ENST00000391945.4:c.3G>A	p.Met1?	p.M1?	ENST00000391945	NM_000400.3	1	atG/atA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560791	9560791	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	104	392	0	ENST00000353224.5:c.990+1G>A		p.X330_splice	ENST00000353224	NM_177990.2	330																																																																															
SRC	6714	MSKCC	GRCh37	20	36028577	36028577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	343	653	0	ENST00000358208.4:c.919C>T	p.Pro307Ser	p.P307S	ENST00000358208		307	Cca/Tca																																																																														
TOP1	7150	MSKCC	GRCh37	20	39725977	39725977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	157	314	0	ENST00000361337.2:c.848G>A	p.Arg283Lys	p.R283K	ENST00000361337	NM_003286.2	283	aGa/aAa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39728792	39728792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	105	480	0	ENST00000361337.2:c.1072C>T	p.Pro358Ser	p.P358S	ENST00000361337	NM_003286.2	358	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713475	40713475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	214	467	0	ENST00000373198.4:c.4040G>C	p.Gly1347Ala	p.G1347A	ENST00000373198	NM_133170.3	1347	gGt/gCt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733359	40733359	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	87	305	0	ENST00000373198.4:c.3448-1G>A		p.X1150_splice	ENST00000373198	NM_133170.3	1150																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41076954	41076954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	222	585	0	ENST00000373198.4:c.1466C>T	p.Pro489Leu	p.P489L	ENST00000373198	NM_133170.3	489	cCt/cTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101134	41101134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	204	408	0	ENST00000373198.4:c.1222G>A	p.Glu408Lys	p.E408K	ENST00000373198	NM_133170.3	408	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408867	41408867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	176	677	0	ENST00000373198.4:c.559C>T	p.His187Tyr	p.H187Y	ENST00000373198	NM_133170.3	187	Cat/Tat																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171685	36171685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	152	634	1	ENST00000300305.3:c.880C>T	p.Pro294Ser	p.P294S	ENST00000300305		294	Cct/Tct																																																																														
EP300	2033	MSKCC	GRCh37	22	41573257	41573257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	208	414	0	ENST00000263253.7:c.5542C>T	p.Pro1848Ser	p.P1848S	ENST00000263253	NM_001429.3	1848	Cct/Tct																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317548	1317548	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	245	563	0				ENST00000381566																																																																																	
XIAP	331	MSKCC	GRCh37	X	123040927	123040927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	78	112	0	ENST00000355640.3:c.1390C>T	p.Pro464Ser	p.P464S	ENST00000355640		464	Cct/Tct																																																																														
CDC73	79577	MSKCC	GRCh37	1	193094261	193094262	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	115	539	0	ENST00000367435.3:c.151_152delinsTT	p.Pro51Phe	p.P51F	ENST00000367435	NM_024529.4	51	CCc/TTc																																																																														
MET	4233	MSKCC	GRCh37	7	116411630	116411631	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	263	590	0	ENST00000397752.3:c.2809_2810delinsAA	p.Gly937Asn	p.G937N	ENST00000397752	NM_000245.2	937	GGt/AAt																																																																														
NF2	4771	MSKCC	GRCh37	22	30050704	30050706	+	missense_variant	Missense_Mutation	ONP	TTC	TTC	CTA			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	200	425	0	ENST00000338641.4:c.506_508delinsCTA	p.Leu169_Pro170delinsProThr	p.L169_P170delinsPT	ENST00000338641	NM_000268.3	169	cTTCca/cCTAca																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043899	180043900	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TA			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	243	660	1	ENST00000261937.6:c.3096_3096+1delinsTA		p.X1032_splice	ENST00000261937	NM_182925.4	1032																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420909	49420910	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	209	254	0	ENST00000301067.7:c.14839_14840delinsTT	p.Pro4947Phe	p.P4947F	ENST00000301067	NM_003482.3	4947	CCc/TTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29652837	29652838	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0005366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	283	395	0	ENST00000358273.4:c.4836-1_4836delinsAA		p.X1612_splice	ENST00000358273	NM_001042492.2	1612																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78430402	78430402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	243	442	1	ENST00000370768.2:c.766C>T	p.Arg256Cys	p.R256C	ENST00000370768	NM_003902.3	256	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251821	212251821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	148	398	1	ENST00000342788.4:c.3238C>T	p.Pro1080Ser	p.P1080S	ENST00000342788	NM_005235.2	1080	Ccc/Tcc																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72891539	72891539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	190	348	1	ENST00000325599.8:c.223C>T	p.Arg75Cys	p.R75C	ENST00000325599	NM_018130.2	75	Cgc/Tgc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259301	89259301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	228	491	0	ENST00000336596.2:c.445G>A	p.Asp149Asn	p.D149N	ENST00000336596	NM_005233.5	149	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	58	160	0				ENST00000310581	NM_198253.2																																																																																
EGFR	1956	MSKCC	GRCh37	7	55219001	55219001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	258	507	0	ENST00000275493.2:c.574C>T	p.Pro192Ser	p.P192S	ENST00000275493	NM_005228.3	192	Cca/Tca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	369	363	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499793	8499793	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	249	449	0	ENST00000356435.5:c.2176A>T	p.Thr726Ser	p.T726S	ENST00000356435		726	Aca/Tca																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850622	63850622	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	193	310	0	ENST00000279873.7:c.1400T>A	p.Val467Asp	p.V467D	ENST00000279873	NM_032199.2	467	gTt/gAt																																																																														
WT1	7490	MSKCC	GRCh37	11	32410723	32410723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	200	362	0	ENST00000332351.3:c.1435G>A	p.Glu479Lys	p.E479K	ENST00000332351	NM_024426.4	479	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108216484	108216484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	226	435	0	ENST00000278616.4:c.8433G>T	p.Lys2811Asn	p.K2811N	ENST00000278616	NM_000051.3	2811	aaG/aaT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10254658	10254658	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	125	272	0	ENST00000340748.4:c.2852A>G	p.Lys951Arg	p.K951R	ENST00000340748		951	aAg/aGg																																																																														
CIC	23152	MSKCC	GRCh37	19	42795751	42795751	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	209	375	0	ENST00000575354.2:c.2740T>G	p.Ser914Ala	p.S914A	ENST00000575354	NM_015125.3	914	Tca/Gca																																																																														
ERG	2078	MSKCC	GRCh37	21	39755678	39755678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	220	456	0	ENST00000288319.7:c.1087G>A	p.Asp363Asn	p.D363N	ENST00000288319	NM_182918.3	363	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	39	468	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	123	1128	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	126	1461	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	251	1138	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
BCL6	604	MSKCC	GRCh37	3	187447088	187447088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	170	787	1	ENST00000232014.4:c.1105G>T	p.Asp369Tyr	p.D369Y	ENST00000232014	NM_001130845.1	369	Gac/Tac																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372343	55372343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	145	775	2	ENST00000297316.4:c.1033G>A	p.Gly345Ser	p.G345S	ENST00000297316	NM_022454.3	345	Ggc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427012	49427012	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	43	870	1	ENST00000301067.7:c.11476C>T	p.Gln3826Ter	p.Q3826*	ENST00000301067	NM_003482.3	3826	Cag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66765496	66765496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	166	613	2	ENST00000374690.3:c.508A>G	p.Thr170Ala	p.T170A	ENST00000374690	NM_000044.3	170	Act/Gct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942739	44942739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	143	782	2	ENST00000377967.4:c.3320delC	p.Pro1107LeufsTer13	p.P1107Lfs*13	ENST00000377967	NM_021140.2	1107	Cct/ct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	86	110	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	4441	218	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984762	72984762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	197	387	0	ENST00000268489.5:c.2822C>T	p.Ser941Leu	p.S941L	ENST00000268489	NM_006885.3	941	tCg/tTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	221	170	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	221	170	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	221	170	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074066	8074066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1437	238	448	0	ENST00000377482.5:c.593G>A	p.Arg198Lys	p.R198K	ENST00000377482	NM_018948.3	198	aGg/aAg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267360	198267360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	192	283	1	ENST00000335508.6:c.1997A>T	p.Lys666Met	p.K666M	ENST00000335508	NM_012433.2	666	aAg/aTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643951	52643951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	151	151	0	ENST00000394830.3:c.1945C>T	p.Pro649Ser	p.P649S	ENST00000394830	NM_018313.4	649	Cct/Tct																																																																														
SDHA	6389	MSKCC	GRCh37	5	235435	235435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	182	224	0	ENST00000264932.6:c.1241C>T	p.Pro414Leu	p.P414L	ENST00000264932	NM_004168.2	414	cCc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112176515	112176515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	209	203	0	ENST00000257430.4:c.5224C>T	p.Arg1742Cys	p.R1742C	ENST00000257430	NM_000038.5	1742	Cgt/Tgt																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778008	27778008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1361	600	490	1	ENST00000369163.2:c.157C>T	p.Arg53Cys	p.R53C	ENST00000369163	NM_003536.2	53	Cgc/Tgc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729934	41729934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	434	407	0	ENST00000242208.4:c.595G>A	p.Gly199Arg	p.G199R	ENST00000242208	NM_002192.2	199	Ggg/Agg																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514334	69514334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	225	212	1	ENST00000294312.3:c.347C>T	p.Ser116Leu	p.S116L	ENST00000294312	NM_005117.2	116	tCg/tTg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625194	69625194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	284	254	0	ENST00000334134.2:c.599G>A	p.Arg200Lys	p.R200K	ENST00000334134	NM_005247.2	200	aGa/aAa																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047261	77047261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	413	338	0	ENST00000356341.3:c.1283C>T	p.Pro428Leu	p.P428L	ENST00000356341	NM_002576.4	428	cCa/cTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245237	46245237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	303	205	0	ENST00000334344.6:c.3331G>A	p.Val1111Met	p.V1111M	ENST00000334344	NM_152641.2	1111	Gtg/Atg																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68331727	68331727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	206	147	0	ENST00000487270.1:c.323G>A	p.Gly108Asp	p.G108D	ENST00000487270	NM_133509.3	108	gGt/gAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777966	3777966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	127	281	0	ENST00000262367.5:c.7082C>T	p.Ser2361Phe	p.S2361F	ENST00000262367	NM_004380.2	2361	tCc/tTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532589	63532589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	170	169	0	ENST00000307078.5:c.1990G>A	p.Gly664Arg	p.G664R	ENST00000307078	NM_004655.3	664	Ggg/Agg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258397	16258406	+	frameshift_variant	Frame_Shift_Del	DEL	GAACATCCCG	GAACATCCCG	TACATCCCA			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	328	283	0	ENST00000375759.3:c.5662_5671delinsTACATCCCA	p.Glu1888TyrfsTer17	p.E1888Yfs*17	ENST00000375759	NM_015001.2	1888	GAACATCCCGaa/TACATCCCAaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629514	187629515	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	238	245	0	ENST00000441802.2:c.1467_1468delinsTT	p.Pro490Ser	p.P490S	ENST00000441802	NM_005245.3	489	gaCCct/gaTTct																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250857	10250858	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	207	214	0	ENST00000340748.4:c.3622_3623delinsAA	p.Gly1208Asn	p.G1208N	ENST00000340748		1208	GGc/AAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	84	160	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	30	258	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ATM	472	MSKCC	GRCh37	11	108178641	108178641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	99	255	0	ENST00000278616.4:c.5692C>T	p.Arg1898Ter	p.R1898*	ENST00000278616	NM_000051.3	1898	Cga/Tga																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94194197	94194197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	110	417	0	ENST00000323929.3:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000323929	NM_005591.3	411	Gag/Aag																																																																														
MYCL	4610	MSKCC	GRCh37	1	40367486	40367486	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	19	50	0	ENST00000397332.2:c.75G>A	p.Trp25Ter	p.W25*	ENST00000397332	NM_001033082.2	25	tgG/tgA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55140764	55140764	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	142	461	0	ENST00000257290.5:c.1625T>A	p.Leu542His	p.L542H	ENST00000257290	NM_006206.4	542	cTt/cAt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652015	36652015	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	299	406	0	ENST00000244741.5:c.137G>C	p.Arg46Pro	p.R46P	ENST00000244741	NM_000389.4	46	cGt/cCt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066519	94066519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	110	744	0	ENST00000369303.4:c.1240G>A	p.Glu414Lys	p.E414K	ENST00000369303	NM_004440.3	414	Gaa/Aaa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787737	135787737	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	282	525	0	ENST00000298552.3:c.845C>G	p.Ser282Ter	p.S282*	ENST00000298552	NM_001162426.1	282	tCa/tGa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851261	63851261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	167	352	0	ENST00000279873.7:c.2039C>G	p.Ser680Cys	p.S680C	ENST00000279873	NM_032199.2	680	tCt/tGt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544129	18544129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	141	547	0	ENST00000266497.5:c.1946C>G	p.Pro649Arg	p.P649R	ENST00000266497		649	cCa/cGa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434997	49434997	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	27	112	0	ENST00000301067.7:c.6556G>T	p.Glu2186Ter	p.E2186*	ENST00000301067	NM_003482.3	2186	Gag/Tag																																																																														
CDK8	1024	MSKCC	GRCh37	13	26828820	26828820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	168	441	0	ENST00000381527.3:c.42G>T	p.Glu14Asp	p.E14D	ENST00000381527	NM_001260.1	14	gaG/gaT																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129448	30129448	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	195	570	0	ENST00000263025.4:c.580G>C	p.Glu194Gln	p.E194Q	ENST00000263025	NM_002746.2	194	Gag/Cag																																																																														
NUP93	9688	MSKCC	GRCh37	16	56867273	56867273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	51	605	0	ENST00000308159.5:c.1492G>C	p.Glu498Gln	p.E498Q	ENST00000308159	NM_014669.4	498	Gag/Cag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245601	41245601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	143	517	0	ENST00000357654.3:c.1947G>T	p.Glu649Asp	p.E649D	ENST00000357654	NM_007294.3	649	gaG/gaT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245606	41245606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	140	516	1	ENST00000357654.3:c.1942G>A	p.Glu648Lys	p.E648K	ENST00000357654	NM_007294.3	648	Gaa/Aaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246800	41246800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	153	495	0	ENST00000357654.3:c.748G>A	p.Glu250Lys	p.E250K	ENST00000357654	NM_007294.3	250	Gag/Aag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53231092	53231092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	44	338	0	ENST00000375401.3:c.1810G>A	p.Gly604Ser	p.G604S	ENST00000375401	NM_004187.3	604	Ggc/Agc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185004	123185004	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	170	256	0	ENST00000218089.9:c.1051C>G	p.Leu351Val	p.L351V	ENST00000218089	NM_001042749.1	351	Cta/Gta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	22	102	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	26	269	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209110083	209110083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	39	258	0	ENST00000345146.2:c.480C>G	p.Asp160Glu	p.D160E	ENST00000345146	NM_005896.2	160	gaC/gaG																																																																														
BCL6	604	MSKCC	GRCh37	3	187443346	187443346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	23	204	0	ENST00000232014.4:c.1780C>G	p.Arg594Gly	p.R594G	ENST00000232014	NM_001130845.1	594	Cga/Gga																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732535	74732535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	29	172	0	ENST00000359995.5:c.374G>A	p.Arg125His	p.R125H	ENST00000359995	NM_001195427.1	125	cGt/cAt																																																																														
ALK	238	MSKCC	GRCh37	2	30143462	30143462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	10	77	0	ENST00000389048.3:c.64G>A	p.Gly22Arg	p.G22R	ENST00000389048	NM_004304.4	22	Ggg/Agg																																																																														
FANCC	2176	MSKCC	GRCh37	9	97887428	97887428	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	157	253	0	ENST00000289081.3:c.936A>G	p.Ile312Met	p.I312M	ENST00000289081	NM_000136.2	312	atA/atG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106937	27106937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	38	197	1	ENST00000324856.7:c.6548G>A	p.Arg2183His	p.R2183H	ENST00000324856	NM_006015.4	2183	cGt/cAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026344	48026344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	28	196	0	ENST00000234420.5:c.1222C>T	p.Pro408Ser	p.P408S	ENST00000234420	NM_000179.2	408	Cct/Tct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157519989	157519989	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	72	292	1	ENST00000346085.5:c.4058C>A	p.Ser1353Ter	p.S1353*	ENST00000346085	NM_020732.3	1353	tCg/tAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468236	50468236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	28	201	0	ENST00000331340.3:c.1471G>A	p.Glu491Lys	p.E491K	ENST00000331340	NM_006060.4	491	Gag/Aag																																																																														
ATM	472	MSKCC	GRCh37	11	108216608	108216608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	23	184	0	ENST00000278616.4:c.8557A>G	p.Thr2853Ala	p.T2853A	ENST00000278616	NM_000051.3	2853	Acg/Gcg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	495065	495065	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	47	264	0	ENST00000399788.2:c.241G>A	p.Glu81Lys	p.E81K	ENST00000399788	NM_001042603.1	81	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866359	37866359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	50	185	0	ENST00000269571.5:c.664G>T	p.Gly222Cys	p.G222C	ENST00000269571		222	Ggt/Tgt																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73774771	73774771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	60	195	0	ENST00000254810.4:c.316G>A	p.Glu106Lys	p.E106K	ENST00000254810	NM_005324.3	106	Gaa/Aaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129670	11129670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	79	267	1	ENST00000344626.4:c.2476G>A	p.Ala826Thr	p.A826T	ENST00000344626	NM_003072.3	826	Gcc/Acc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923060	44923060	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	20	127	0	ENST00000377967.4:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000377967	NM_021140.2	641	Cag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030637	47030637	+	intron_variant	Intron	SNP	C	C	T			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	69	144	0	ENST00000329236.7:c.201+1740C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3789656	3789714	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCTCAAAAGCAAACAGAGCTTTGGTTCGATATGGGAAAGATTCAGACATTTCCCCAG	TTCCTCAAAAGCAAACAGAGCTTTGGTTCGATATGGGAAAGATTCAGACATTTCCCCAG	-			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	44	302	0	ENST00000262367.5:c.4145_4203del	p.Ser1382TyrfsTer2	p.S1382Yfs*2	ENST00000262367	NM_004380.2	1382	tCTGGGGAAATGTCTGAATCTTTCCCATATCGAACCAAAGCTCTGTTTGCTTTTGAGGAA/t																																																																														
CUL3	8452	MSKCC	GRCh37	2	225360616	225360616	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	32	278	0	ENST00000264414.4:c.1775del	p.Leu592CysfsTer8	p.L592Cfs*8	ENST00000264414	NM_003590.4	592	tTg/tg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953322	17953336	+	inframe_deletion	In_Frame_Del	DEL	GCAGGGCTCTGCGCA	GCAGGGCTCTGCGCA	-			P-0005427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	38	270	0	ENST00000458235.1:c.650_664del	p.Val217_Arg222delinsGly	p.V217_R222delinsG	ENST00000458235	NM_000215.3	217	gTGCGCAGAGCCCTGCgc/ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	157	603	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	49026177	49026875	+	intron_variant	Intron	DEL	AATTTTTTCAAAAAATAAGCTCCTGGATTCATTGATTTTTTAAGGGTTTTTTGTGTCTCTGTCTCCTTCAGTTCTGCTCTGATCTTGGTTATTTTTTGTCTTCTGCTAGCTTTGGGGTTTGTTTGCTCTTTGAACTGGTTTTAGTATCAATATTGTACTAGCTTCATAAAATGAGATGAGGAATGTTTCTAGTTTTTCCATTCCAGGAAGAAAATCTGAGTAAAAGTGGAATTATCTGTCCCTTGAATGTTTGGTAGAATTTACTGGTAAAACCAAATGAGCTTGATGTTTTATTTATGGGAAGATTTTAAATTATTGATTCAAATTATTTAATAGTTGCAGGACTATGTAAGTTATTTTATTTCTTTTTTATTGAGTTTTGGTAATTTGTATTTTTGTAGTAATTTTCCACTTGGTCTACGTTTTCCAATTTATTGATATAAAATTATTCATAATAATTCCCTATTATCTTTTTAATCTTTGTGATTTTGTCCCATTTTTCATACCTAATACTGCCTATCTATCTCTTTTCTTTATCTTGATCAATCTGACTGGAGATTTGTTAGTTATTTCAAAGAATCCATTTTTGGCTTTGTTGACCAAACTGTGTTTTATCTTTGTTTTCAGTTTCATTAAGTTCTGCTCATGTCTTCATTTCTTTCTCTCCACTTTCTTCGTTTTTTTTCTGTCTTTCCTCCT	AATTTTTTCAAAAAATAAGCTCCTGGATTCATTGATTTTTTAAGGGTTTTTTGTGTCTCTGTCTCCTTCAGTTCTGCTCTGATCTTGGTTATTTTTTGTCTTCTGCTAGCTTTGGGGTTTGTTTGCTCTTTGAACTGGTTTTAGTATCAATATTGTACTAGCTTCATAAAATGAGATGAGGAATGTTTCTAGTTTTTCCATTCCAGGAAGAAAATCTGAGTAAAAGTGGAATTATCTGTCCCTTGAATGTTTGGTAGAATTTACTGGTAAAACCAAATGAGCTTGATGTTTTATTTATGGGAAGATTTTAAATTATTGATTCAAATTATTTAATAGTTGCAGGACTATGTAAGTTATTTTATTTCTTTTTTATTGAGTTTTGGTAATTTGTATTTTTGTAGTAATTTTCCACTTGGTCTACGTTTTCCAATTTATTGATATAAAATTATTCATAATAATTCCCTATTATCTTTTTAATCTTTGTGATTTTGTCCCATTTTTCATACCTAATACTGCCTATCTATCTCTTTTCTTTATCTTGATCAATCTGACTGGAGATTTGTTAGTTATTTCAAAGAATCCATTTTTGGCTTTGTTGACCAAACTGTGTTTTATCTTTGTTTTCAGTTTCATTAAGTTCTGCTCATGTCTTCATTTCTTTCTCTCCACTTTCTTCGTTTTTTTTCTGTCTTTCCTCCT	-			P-0005473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			0	88	1	0	ENST00000267163.4:c.1696-950_1696-252delTTTTTTCAAAAAATAAGCTCCTGGATTCATTGATTTTTTAAGGGTTTTTTGTGTCTCTGTCTCCTTCAGTTCTGCTCTGATCTTGGTTATTTTTTGTCTTCTGCTAGCTTTGGGGTTTGTTTGCTCTTTGAACTGGTTTTAGTATCAATATTGTACTAGCTTCATAAAATGAGATGAGGAATGTTTCTAGTTTTTCCATTCCAGGAAGAAAATCTGAGTAAAAGTGGAATTATCTGTCCCTTGAATGTTTGGTAGAATTTACTGGTAAAACCAAATGAGCTTGATGTTTTATTTATGGGAAGATTTTAAATTATTGATTCAAATTATTTAATAGTTGCAGGACTATGTAAGTTATTTTATTTCTTTTTTATTGAGTTTTGGTAATTTGTATTTTTGTAGTAATTTTCCACTTGGTCTACGTTTTCCAATTTATTGATATAAAATTATTCATAATAATTCCCTATTATCTTTTTAATCTTTGTGATTTTGTCCCATTTTTCATACCTAATACTGCCTATCTATCTCTTTTCTTTATCTTGATCAATCTGACTGGAGATTTGTTAGTTATTTCAAAGAATCCATTTTTGGCTTTGTTGACCAAACTGTGTTTTATCTTTGTTTTCAGTTTCATTAAGTTCTGCTCATGTCTTCATTTCTTTCTCTCCACTTTCTTCGTTTTTTTTCTGTCTTTCCTCCTAA		p.*566*	ENST00000267163	NM_000321.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	308	301	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0005493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	433	250	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0005493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	703	379	0	ENST00000269305.4:c.993+2T>G		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
HGF	3082	MSKCC	GRCh37	7	81331980	81331980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	457	451	0	ENST00000222390.5:c.2104C>T	p.Arg702Cys	p.R702C	ENST00000222390	NM_000601.4	702	Cgt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800948	18800948	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	49	350	0	ENST00000266497.5:c.4324A>T	p.Asn1442Tyr	p.N1442Y	ENST00000266497		1442	Aac/Tac																																																																														
FLCN	201163	MSKCC	GRCh37	17	17117084	17117084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	476	401	0	ENST00000285071.4:c.1625C>T	p.Ser542Phe	p.S542F	ENST00000285071	NM_144997.5	542	tCc/tTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560913	9560913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	609	498	2	ENST00000353224.5:c.869C>T	p.Ser290Leu	p.S290L	ENST00000353224	NM_177990.2	290	tCg/tTg																																																																														
RB1	5925	MSKCC	GRCh37	13	49039373	49039374	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AT			P-0005493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	237	484	0	ENST00000267163.4:c.2358_2359delinsAT	p.Arg787Ter	p.R787*	ENST00000267163	NM_000321.2	786	ccTCga/ccATga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	33	232	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27107180	27107180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	39	285	0	ENST00000324856.7:c.6791C>T	p.Ser2264Leu	p.S2264L	ENST00000324856	NM_006015.4	2264	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	108	571	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	109	596	0	ENST00000269305.4:c.811G>C	p.Glu271Gln	p.E271Q	ENST00000269305	NM_001126112.2	271	Gag/Cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107135	27107135	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	45	234	0	ENST00000324856.7:c.6746C>G	p.Ser2249Ter	p.S2249*	ENST00000324856	NM_006015.4	2249	tCa/tGa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492922	8492922	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	48	557	0	ENST00000356435.5:c.2407T>G	p.Tyr803Asp	p.Y803D	ENST00000356435		803	Tac/Gac																																																																														
MAX	4149	MSKCC	GRCh37	14	65569028	65569028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	62	507	0	ENST00000358664.4:c.30G>C	p.Glu10Asp	p.E10D	ENST00000358664	NM_002382.4	10	gaG/gaC																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216076	7216076	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0005497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1424	168	760	0	ENST00000380728.2:c.983G>C	p.Ter328SerextTer?	p.*328Sext*?	ENST00000380728		328	tGa/tCa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462108	120462108	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	193	567	0	ENST00000256646.2:c.5608C>T	p.Gln1870Ter	p.Q1870*	ENST00000256646	NM_024408.3	1870	Cag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	29543748	29543748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	237	421	0	ENST00000389048.3:c.1415G>A	p.Arg472Gln	p.R472Q	ENST00000389048	NM_004304.4	472	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917531	178917531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	251	394	1	ENST00000263967.3:c.406G>A	p.Val136Ile	p.V136I	ENST00000263967	NM_006218.2	136	Gta/Ata																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806185	1806185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	76	656	0	ENST00000260795.2:c.1204C>T	p.Pro402Ser	p.P402S	ENST00000260795		402	Ccc/Tcc																																																																														
KDR	3791	MSKCC	GRCh37	4	55963934	55963934	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	67	332	0	ENST00000263923.4:c.2510-1G>A		p.X837_splice	ENST00000263923	NM_002253.2	837																																																																															
KDR	3791	MSKCC	GRCh37	4	55980297	55980297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	83	405	0	ENST00000263923.4:c.794C>T	p.Ser265Leu	p.S265L	ENST00000263923	NM_002253.2	265	tCg/tTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356251	66356251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	139	421	1	ENST00000273854.3:c.1246C>T	p.Pro416Ser	p.P416S	ENST00000273854	NM_004439.5	416	Ccc/Tcc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467434	66467434	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	50	390	0	ENST00000273854.3:c.835G>T	p.Glu279Ter	p.E279*	ENST00000273854	NM_004439.5	279	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539090	187539090	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	85	487	0	ENST00000441802.2:c.8650C>T	p.Gln2884Ter	p.Q2884*	ENST00000441802	NM_005245.3	2884	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630411	187630411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	159	492	2	ENST00000441802.2:c.571C>T	p.Arg191Ter	p.R191*	ENST00000441802	NM_005245.3	191	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	192	392	1				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295230	1295230	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	51	394	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876184	35876184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	313	502	0	ENST00000303115.3:c.976G>A	p.Asp326Asn	p.D326N	ENST00000303115	NM_002185.3	326	Gat/Aat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38962591	38962591	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	154	367	0	ENST00000357387.3:c.1664T>G	p.Leu555Arg	p.L555R	ENST00000357387	NM_152756.3	555	cTt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112177485	112177485	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112487226		P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	82	422	0	ENST00000257430.4:c.6194C>T	p.Pro2065Leu	p.P2065L	ENST00000257430	NM_000038.5	2065	cCc/cTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149501478	149501478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	406	661	0	ENST00000261799.4:c.2309A>G	p.Asn770Ser	p.N770S	ENST00000261799	NM_002609.3	770	aAc/aGc																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271483	26271483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1588	719	1325	1	ENST00000305910.3:c.130C>T	p.Pro44Ser	p.P44S	ENST00000305910	NM_003534.2	44	Ccc/Tcc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678023	117678023	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	198	542	0	ENST00000368508.3:c.3910A>C	p.Ile1304Leu	p.I1304L	ENST00000368508	NM_002944.2	1304	Att/Ctt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517317	157517317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	197	549	0	ENST00000346085.5:c.3881C>T	p.Pro1294Leu	p.P1294L	ENST00000346085	NM_020732.3	1294	cCc/cTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2957001	2957001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	151	347	0	ENST00000396946.4:c.2626G>A	p.Glu876Lys	p.E876K	ENST00000396946	NM_032415.4	876	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873725	151873726	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	134	332	0	ENST00000262189.6:c.8812_8813delinsTT	p.Pro2938Leu	p.P2938L	ENST00000262189	NM_170606.2	2938	CCa/TTa																																																																														
MYC	4609	MSKCC	GRCh37	8	128752773	128752773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	167	294	0	ENST00000377970.2:c.934C>T	p.Leu312Phe	p.L312F	ENST00000377970	NM_002467.4	312	Ctc/Ttc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080255	5080256	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	113	418	0	ENST00000381652.3:c.2158_2159delinsTT	p.Pro720Leu	p.P720L	ENST00000381652	NM_004972.3	720	CCa/TTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	81	153	1	ENST00000304494.5:c.171_172delinsAT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcATga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	81	153	1	ENST00000304494.5:c.171_172delinsAT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcATga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971187	21971187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	81	152	0	ENST00000361570.3:c.337C>A	p.Pro113Thr	p.P113T	ENST00000361570	NM_058195.3	113	Ccg/Acg																																																																														
SYK	6850	MSKCC	GRCh37	9	93606259	93606259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	215	629	1	ENST00000375746.1:c.79G>A	p.Asp27Asn	p.D27N	ENST00000375746	NM_001174167.1	27	Gat/Aat																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209556	98209556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	134	328	1	ENST00000331920.6:c.3982G>A	p.Glu1328Lys	p.E1328K	ENST00000331920	NM_000264.3	1328	Gaa/Aaa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101909953	101909953	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	120	316	0	ENST00000374994.4:c.1273C>T	p.Gln425Ter	p.Q425*	ENST00000374994	NM_004612.2	425	Caa/Taa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400334	139400334	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	25	95	0	ENST00000277541.6:c.4015-1G>A		p.X1339_splice	ENST00000277541	NM_017617.3	1339																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412375	139412375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	186	378	0	ENST00000277541.6:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000277541	NM_017617.3	424	Gag/Aag																																																																														
SUFU	51684	MSKCC	GRCh37	10	104309758	104309758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	290	638	1	ENST00000369902.3:c.349G>A	p.Gly117Ser	p.G117S	ENST00000369902	NM_016169.3	117	Ggc/Agc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047156	77047157	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	200	665	0	ENST00000356341.3:c.1387_1388delinsTT	p.Pro463Leu	p.P463L	ENST00000356341	NM_002576.4	463	CCa/TTa																																																																														
PGR	5241	MSKCC	GRCh37	11	100922258	100922258	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	186	861	0	ENST00000325455.5:c.2254C>T	p.Gln752Ter	p.Q752*	ENST00000325455	NM_001202474.3	752	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108213988	108213988	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	146	369	0	ENST00000278616.4:c.8308T>G	p.Cys2770Gly	p.C2770G	ENST00000278616	NM_000051.3	2770	Tgc/Ggc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022624	12022624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	130	495	0	ENST00000396373.4:c.730C>T	p.His244Tyr	p.H244Y	ENST00000396373	NM_001987.4	244	Cac/Tac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910809	32910809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	965	998	5	ENST00000380152.3:c.2317C>T	p.Pro773Ser	p.P773S	ENST00000380152		773	Cct/Tct																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061733	38061733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	49	314	0	ENST00000250448.2:c.256C>T	p.Pro86Ser	p.P86S	ENST00000250448	NM_004496.3	86	Ccg/Tcg																																																																														
RAD51	5888	MSKCC	GRCh37	15	41011031	41011031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1424	148	883	0	ENST00000267868.3:c.464G>A	p.Gly155Glu	p.G155E	ENST00000267868	NM_002875.4	155	gGa/gAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42002918	42002918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1190	118	814	3	ENST00000219905.7:c.2455C>T	p.Arg819Cys	p.R819C	ENST00000219905	NM_001164273.1	819	Cgt/Tgt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041699	42041699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1361	166	911	0	ENST00000219905.7:c.5894C>T	p.Ser1965Phe	p.S1965F	ENST00000219905	NM_001164273.1	1965	tCc/tTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679778	88679778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	79	682	0	ENST00000360948.2:c.685A>G	p.Ile229Val	p.I229V	ENST00000360948	NM_001012338.2	229	Atc/Gtc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858007	9858007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	69	481	1	ENST00000330684.3:c.3394C>T	p.Pro1132Ser	p.P1132S	ENST00000330684	NM_001134407.1	1132	Cca/Tca																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858306	9858306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	113	349	0	ENST00000330684.3:c.3095C>T	p.Ser1032Phe	p.S1032F	ENST00000330684	NM_001134407.1	1032	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992907	72992907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1401	357	1022	1	ENST00000268489.5:c.1138C>T	p.Pro380Ser	p.P380S	ENST00000268489	NM_006885.3	380	Cca/Tca																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836429	89836429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	72	336	0	ENST00000389301.3:c.2320C>T	p.Pro774Ser	p.P774S	ENST00000389301	NM_000135.2	774	Ccg/Tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1315	138	681	1	ENST00000269305.4:c.1009C>A	p.Arg337Ser	p.R337S	ENST00000269305	NM_001126112.2	337	Cgc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	281	603	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30315429	30315429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	277	618	0	ENST00000322652.5:c.1114C>T	p.Pro372Ser	p.P372S	ENST00000322652	NM_015355.2	372	Cct/Tct																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40371841	40371842	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	346	870	0	ENST00000293328.3:c.569_570delinsTT	p.Ala190Val	p.A190V	ENST00000293328	NM_012448.3	190	gCC/gTT																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119306	3119306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	241	724	1	ENST00000078429.4:c.838G>A	p.Glu280Lys	p.E280K	ENST00000078429	NM_002067.2	280	Gag/Aag																																																																														
GNA11	2767	MSKCC	GRCh37	19	3121094	3121094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	112	684	0	ENST00000078429.4:c.997G>T	p.Asp333Tyr	p.D333Y	ENST00000078429	NM_002067.2	333	Gac/Tac																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10266565	10266565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	236	619	0	ENST00000340748.4:c.1408G>A	p.Asp470Asn	p.D470N	ENST00000340748		470	Gat/Aat																																																																														
CIC	23152	MSKCC	GRCh37	19	42791313	42791313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	70	538	0	ENST00000575354.2:c.373C>T	p.Pro125Ser	p.P125S	ENST00000575354	NM_015125.3	125	Ccc/Tcc																																																																														
BBC3	27113	MSKCC	GRCh37	19	47729947	47729947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	95	332	0	ENST00000449228.1:c.442G>A	p.Gly148Ser	p.G148S	ENST00000449228	NM_001127240.2	148	Ggc/Agc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520176	9520176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	90	557	0	ENST00000353224.5:c.2093C>T	p.Pro698Leu	p.P698L	ENST00000353224	NM_177990.2	698	cCa/cTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306532	41306532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	141	371	0	ENST00000373198.4:c.1127C>T	p.Pro376Leu	p.P376L	ENST00000373198	NM_133170.3	376	cCc/cTc																																																																														
CRKL	1399	MSKCC	GRCh37	22	21272275	21272275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	185	400	1	ENST00000354336.3:c.53C>T	p.Pro18Leu	p.P18L	ENST00000354336	NM_005207.3	18	cCg/cTg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29090022	29090022	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	21	95	0	ENST00000328354.6:c.1459C>T	p.Gln487Ter	p.Q487*	ENST00000328354	NM_007194.3	487	Cag/Tag																																																																														
EP300	2033	MSKCC	GRCh37	22	41569631	41569632	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	188	392	0	ENST00000263253.7:c.4622_4623delinsTT	p.Thr1541Ile	p.T1541I	ENST00000263253	NM_001429.3	1541	aCC/aTT																																																																														
EP300	2033	MSKCC	GRCh37	22	41573483	41573483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	211	494	0	ENST00000263253.7:c.5768C>T	p.Pro1923Leu	p.P1923L	ENST00000263253	NM_001429.3	1923	cCt/cTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911441	39911441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	114	416	0	ENST00000378444.4:c.5189C>T	p.Thr1730Met	p.T1730M	ENST00000378444	NM_001123385.1	1730	aCg/aTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412803	63412803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	194	365	0	ENST00000330258.3:c.364G>A	p.Glu122Lys	p.E122K	ENST00000330258	NM_152424.3	122	Gag/Aag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412823	63412823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	162	325	0	ENST00000330258.3:c.344G>A	p.Gly115Asp	p.G115D	ENST00000330258	NM_152424.3	115	gGc/gAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467342	66467421	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGAGGCAAACTCTTACCTTGACAGGTGCCATTTTTCTCTTCATATCCTGCCTTGCACATGCATTTCCCGATGGGCACCA	TGGAGGCAAACTCTTACCTTGACAGGTGCCATTTTTCTCTTCATATCCTGCCTTGCACATGCATTTCCCGATGGGCACCA	AG			P-0005509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	39	230	0	ENST00000273854.3:c.848_910+17delinsCT		p.X283_splice	ENST00000273854	NM_004439.5	283																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			979	169	368	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	376	646	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1356	236	683	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	203	601	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
RB1	5925	MSKCC	GRCh37	13	49047494	49047494	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			606	188	449	0	ENST00000267163.4:c.2490-2A>G		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
JAK1	3716	MSKCC	GRCh37	1	65301800	65301800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			947	677	555	0	ENST00000342505.4:c.3239C>T	p.Ser1080Leu	p.S1080L	ENST00000342505	NM_002227.2	1080	tCa/tTa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193091386	193091386	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	214	575	0	ENST00000367435.3:c.56T>C	p.Val19Ala	p.V19A	ENST00000367435	NM_024529.4	19	gTg/gCg																																																																														
CASP8	841	MSKCC	GRCh37	2	202151199	202151199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			815	332	569	0	ENST00000358485.4:c.1499C>T	p.Thr500Ile	p.T500I	ENST00000358485	NM_001080125.1	500	aCc/aTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1266579	1266579	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1829	137	517	2	ENST00000310581.5:c.2654G>A	p.Arg885Lys	p.R885K	ENST00000310581	NM_198253.2	885	aGg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295270	1295270	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1345	215	462	0				ENST00000310581	NM_198253.2																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176522644	176522644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	184	624	0	ENST00000292408.4:c.1741G>A	p.Glu581Lys	p.E581K	ENST00000292408	NM_213647.1	581	Gag/Aag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444266	50444266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	71	516	0	ENST00000331340.3:c.196G>A	p.Glu66Lys	p.E66K	ENST00000331340	NM_006060.4	66	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249056	55249056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	199	547	0	ENST00000275493.2:c.2354C>G	p.Thr785Ser	p.T785S	ENST00000275493	NM_005228.3	785	aCc/aGc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80343465	80343465	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			779	168	450	1	ENST00000286548.4:c.854A>G	p.Tyr285Cys	p.Y285C	ENST00000286548	NM_002072.3	285	tAt/tGt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891163	101891163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			570	84	495	0	ENST00000374994.4:c.124A>G	p.Thr42Ala	p.T42A	ENST00000374994	NM_004612.2	42	Aca/Gca																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250047	110250047	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			682	56	387	0	ENST00000374672.4:c.628C>G	p.Pro210Ala	p.P210A	ENST00000374672	NM_004235.4	210	Ccg/Gcg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870988	12870988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	489	469	0	ENST00000228872.4:c.215G>A	p.Gly72Asp	p.G72D	ENST00000228872	NM_004064.3	72	gGc/gAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133240597	133240597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	242	588	0	ENST00000320574.5:c.2699T>C	p.Met900Thr	p.M900T	ENST00000320574	NM_006231.2	900	aTg/aCg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436469	110436469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	246	647	0	ENST00000375856.3:c.1932C>A	p.Ser644Arg	p.S644R	ENST00000375856	NM_003749.2	644	agC/agA																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348160	89348160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1294	176	839	0	ENST00000301030.4:c.4790G>T	p.Arg1597Leu	p.R1597L	ENST00000301030	NM_001256183.1	1597	cGc/cTc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990655	7990655	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	230	600	0	ENST00000319144.4:c.106C>T	p.Gln36Ter	p.Q36*	ENST00000319144	NM_001139.2	36	Cag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676207	37676207	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			993	155	588	0	ENST00000447079.4:c.2964-2A>T		p.X988_splice	ENST00000447079	NM_015083.1	988																																																																															
BRCA1	672	MSKCC	GRCh37	17	41228521	41228521	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			929	140	649	0	ENST00000357654.3:c.4468G>C	p.Glu1490Gln	p.E1490Q	ENST00000357654	NM_007294.3	1490	Gaa/Caa																																																																														
INSR	3643	MSKCC	GRCh37	19	7141810	7141810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	358	669	0	ENST00000302850.5:c.2560G>T	p.Val854Phe	p.V854F	ENST00000302850	NM_000208.2	854	Gtt/Ttt																																																																														
AXL	558	MSKCC	GRCh37	19	41765555	41765555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	337	597	0	ENST00000301178.4:c.2431C>T	p.Pro811Ser	p.P811S	ENST00000301178	NM_021913.4	811	Cct/Tct																																																																														
SRC	6714	MSKCC	GRCh37	20	36031762	36031762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			678	433	526	0	ENST00000358208.4:c.1591C>A	p.Gln531Lys	p.Q531K	ENST00000358208		531	Cag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514453	41514453	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			717	329	543	1	ENST00000373198.4:c.208C>G	p.Pro70Ala	p.P70A	ENST00000373198	NM_133170.3	70	Ccc/Gcc																																																																														
RB1	5925	MSKCC	GRCh37	13	49037952	49037982	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCCTCATGCTGTTCAGGAGGTAGGTAATTT	TTCCTCATGCTGTTCAGGAGGTAGGTAATTT	-			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			771	67	701	0	ENST00000267163.4:c.2193_2211+12del		p.X731_splice	ENST00000267163	NM_000321.2	731																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138452279	138452279	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			819	58	335	0	ENST00000289153.2:c.974A>T	p.His325Leu	p.H325L	ENST00000289153	NM_006219.2	325	cAt/cTt																																																																														
ERG	2078	MSKCC	GRCh37	21	39755587	39755587	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	72	524	0	ENST00000288319.7:c.1178A>G	p.His393Arg	p.H393R	ENST00000288319	NM_182918.3	393	cAc/cGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	72	202	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0005574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	88	335	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041043	47041043	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0005574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	155	430	0	ENST00000329236.7:c.1339C>T	p.Gln447Ter	p.Q447*	ENST00000329236	NM_001204466.1	447	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	314	464	1	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
DDR2	4921	MSKCC	GRCh37	1	162735790	162735790	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	129	437	0	ENST00000367921.3:c.1100-1G>A		p.X367_splice	ENST00000367921	NM_006182.2	367																																																																															
KIT	3815	MSKCC	GRCh37	4	55569976	55569976	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	107	408	0	ENST00000288135.5:c.843A>C	p.Arg281Ser	p.R281S	ENST00000288135	NM_000222.2	281	agA/agC																																																																														
POLD1	5424	MSKCC	GRCh37	19	50920502	50920502	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	69	560	0	ENST00000440232.2:c.3194T>G	p.Leu1065Arg	p.L1065R	ENST00000440232	NM_002691.3	1065	cTg/cGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653772	89653781	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	AAGTACTCAG	AAGTACTCAG	-			P-0005588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	143	243	0	ENST00000371953.3:c.80-9_80del		p.X27_splice	ENST00000371953	NM_000314.4	27																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	266	278	0				ENST00000310581	NM_198253.2																																																																																
FOXP1	27086	MSKCC	GRCh37	3	71247525	71247525	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	112	245	1	ENST00000318789.4:c.8A>T	p.Gln3Leu	p.Q3L	ENST00000318789	NM_032682.5	3	cAa/cTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874395	151874395	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	167	425	0	ENST00000262189.6:c.8143G>T	p.Glu2715Ter	p.E2715*	ENST00000262189	NM_170606.2	2715	Gaa/Taa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699383	47699383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	227	489	0	ENST00000347630.2:c.125G>A	p.Ser42Asn	p.S42N	ENST00000347630	NM_001007230.1	42	aGc/aAc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793265	33793265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	112	269	0	ENST00000498907.2:c.56T>A	p.Leu19Gln	p.L19Q	ENST00000498907	NM_004364.3	19	cTg/cAg																																																																														
CENPA	1058	MSKCC	GRCh37	2	27009121	27009133	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGACCCCGACC	CCCGACCCCGACC	-			P-0005692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	53	259	0	ENST00000335756.4:c.61_73del	p.Thr21AlafsTer9	p.T21Afs*9	ENST00000335756	NM_001809.3	19	agCCCGACCCCGACC/ag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061137	38061197	+	protein_altering_variant	In_Frame_Del	DEL	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	T			P-0005692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	201	112	0	ENST00000250448.2:c.792_852delinsA	p.Arg265_Gly284del	p.R265_G284del	ENST00000250448	NM_004496.3	264	aaGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGC/aaA																																																																														
RAD50	10111	MSKCC	GRCh37	5	131925318	131925324	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTAGAA	TTTAGAA	-			P-0005692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	97	248	0	ENST00000265335.6:c.1246-4_1248del		p.X416_splice	ENST00000265335		416																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	119	366	0				ENST00000310581	NM_198253.2																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156841505	156841505	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145222195		P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	242	1289	1	ENST00000524377.1:c.808G>A	p.Asp270Asn	p.D270N	ENST00000524377	NM_002529.3	270	Gat/Aat																																																																														
EZH2	2146	MSKCC	GRCh37	7	148508728	148508728	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	412	1201	0	ENST00000320356.2:c.1936T>A	p.Tyr646Asn	p.Y646N	ENST00000320356	NM_004456.4	646	Tac/Aac																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729949	41729949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	287	1725	1	ENST00000242208.4:c.580G>A	p.Glu194Lys	p.E194K	ENST00000242208	NM_002192.2	194	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120845	94120845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	192	1499	1	ENST00000369303.4:c.206G>A	p.Arg69Gln	p.R69Q	ENST00000369303	NM_004440.3	69	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29556193	29556193	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	157	461	2	ENST00000358273.4:c.2560C>T	p.Gln854Ter	p.Q854*	ENST00000358273	NM_001042492.2	854	Cag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	29416634	29416634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	253	926	0	ENST00000389048.3:c.4319C>T	p.Ala1440Val	p.A1440V	ENST00000389048	NM_004304.4	1440	gCc/gTc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641217	12641217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	251	1331	3	ENST00000251849.4:c.1081G>A	p.Gly361Arg	p.G361R	ENST00000251849	NM_002880.3	361	Gga/Aga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623250	52623250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	194	820	0	ENST00000394830.3:c.2801C>T	p.Ser934Phe	p.S934F	ENST00000394830	NM_018313.4	934	tCc/tTc																																																																														
ATR	545	MSKCC	GRCh37	3	142238564	142238564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	271	966	0	ENST00000350721.4:c.4329G>A	p.Trp1443Ter	p.W1443*	ENST00000350721	NM_001184.3	1443	tgG/tgA																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191374	185191374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	225	980	0	ENST00000265026.3:c.2255G>A	p.Gly752Glu	p.G752E	ENST00000265026	NM_004721.4	752	gGg/gAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189607225	189607225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	170	1257	0	ENST00000264731.3:c.1604C>T	p.Ser535Phe	p.S535F	ENST00000264731	NM_003722.4	535	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189607257	189607257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	150	1140	0	ENST00000264731.3:c.1636G>A	p.Asp546Asn	p.D546N	ENST00000264731	NM_003722.4	546	Gat/Aat																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873724	35873724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148165103		P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	148	1038	3	ENST00000303115.3:c.680G>A	p.Arg227Lys	p.R227K	ENST00000303115	NM_002185.3	227	aGa/aAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721964	176721964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	229	853	0	ENST00000439151.2:c.7595C>T	p.Ser2532Leu	p.S2532L	ENST00000439151	NM_022455.4	2532	tCa/tTa																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056608	26056608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	126	388	0	ENST00000343677.2:c.49A>G	p.Lys17Glu	p.K17E	ENST00000343677	NM_005319.3	17	Aag/Gag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708106	117708106	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	174	1161	0	ENST00000368508.3:c.2071T>A	p.Leu691Ile	p.L691I	ENST00000368508	NM_002944.2	691	Tta/Ata																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975505	13975505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	133	547	0	ENST00000405192.2:c.382C>T	p.Pro128Ser	p.P128S	ENST00000405192	NM_001163147.1	128	Cca/Tca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211055	55211055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	356	1231	0	ENST00000275493.2:c.298C>T	p.Pro100Ser	p.P100S	ENST00000275493	NM_005228.3	100	Cct/Tct																																																																														
HGF	3082	MSKCC	GRCh37	7	81374393	81374393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	125	1141	2	ENST00000222390.5:c.669G>A	p.Met223Ile	p.M223I	ENST00000222390	NM_000601.4	223	atG/atA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500963	8500963	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141920894		P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	131	1146	2	ENST00000356435.5:c.1919G>A	p.Gly640Asp	p.G640D	ENST00000356435		640	gGc/gAc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94201013	94201013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	186	1098	0	ENST00000323929.3:c.1064C>T	p.Ser355Phe	p.S355F	ENST00000323929	NM_005591.3	355	tCt/tTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343285	118343285	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	139	843	0	ENST00000534358.1:c.1411C>T	p.Gln471Ter	p.Q471*	ENST00000534358	NM_005933.3	471	Caa/Taa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566145	95566145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	167	692	0	ENST00000343455.3:c.4178A>G	p.Asn1393Ser	p.N1393S	ENST00000343455	NM_177438.2	1393	aAc/aGc																																																																														
CD276	80381	MSKCC	GRCh37	15	73996135	73996135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	307	1163	0	ENST00000318443.5:c.869C>T	p.Thr290Ile	p.T290I	ENST00000318443	NM_001024736.1	290	aCc/aTc																																																																														
CASP8	841	MSKCC	GRCh37	2	202139637	202139637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	233	1197	0	ENST00000358485.4:c.799del	p.Ile267SerfsTer21	p.I267Sfs*21	ENST00000358485	NM_001080125.1	266	acA/ac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393567	139393567	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	243	968	1	ENST00000277541.6:c.6079del	p.Leu2027TrpfsTer12	p.L2027Wfs*12	ENST00000277541	NM_017617.3	2027	Ctg/tg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	140	335	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	9	518	2	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			201	38	335	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			232	99	335	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			301	148	439	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170135	32170135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			424	50	481	0	ENST00000375023.3:c.3473G>A	p.Arg1158Gln	p.R1158Q	ENST00000375023	NM_004557.3	1158	cGa/cAa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907098	101907098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			363	133	468	1	ENST00000374994.4:c.1058G>T	p.Gly353Val	p.G353V	ENST00000374994	NM_004612.2	353	gGa/gTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727077	40727077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			668	38	500	0	ENST00000373198.4:c.3887A>T	p.Glu1296Val	p.E1296V	ENST00000373198	NM_133170.3	1296	gAg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112173765	112173781	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTGAATACTACAGTG	ATTTGAATACTACAGTG	-			P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			331	62	406	0	ENST00000257430.4:c.2474_2490del	p.Tyr825PhefsTer13	p.Y825Ffs*13	ENST00000257430	NM_000038.5	825	tATTTGAATACTACAGTG/t																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023137	150023141	+	frameshift_variant	Frame_Shift_Del	DEL	AGATA	AGATA	-			P-0005776-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			498	102	567	0	ENST00000253339.5:c.122_126del	p.Leu41Ter	p.L41*	ENST00000253339		41	tTATCT/t																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	46	204	0				ENST00000310581	NM_198253.2																																																																																
ARID2	196528	MSKCC	GRCh37	12	46245843	46245843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	190	395	0	ENST00000334344.6:c.3937C>T	p.Gln1313Ter	p.Q1313*	ENST00000334344	NM_152641.2	1313	Caa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29528489	29528489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	218	427	0	ENST00000358273.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000358273	NM_001042492.2	416	Cga/Tga																																																																														
MET	4233	MSKCC	GRCh37	7	116339680	116339680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	293	288	0	ENST00000397752.3:c.542G>A	p.Gly181Glu	p.G181E	ENST00000397752	NM_000245.2	181	gGa/gAa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032215	26032215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	284	435	0	ENST00000244661.2:c.74C>T	p.Ala25Val	p.A25V	ENST00000244661	NM_003537.3	25	gCt/gTt																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076812	72076812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	144	393	0	ENST00000357731.5:c.685G>A	p.Glu229Lys	p.E229K	ENST00000357731	NM_173808.2	229	Gaa/Aaa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939048	36939048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	208	629	1	ENST00000361632.4:c.661C>T	p.Pro221Ser	p.P221S	ENST00000361632		221	Ccc/Tcc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65313277	65313277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	214	503	2	ENST00000342505.4:c.1837G>A	p.Glu613Lys	p.E613K	ENST00000342505	NM_002227.2	613	Gaa/Aaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841545	156841545	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	131	332	0	ENST00000524377.1:c.848C>T	p.Ser283Phe	p.S283F	ENST00000524377	NM_002529.3	283	tCc/tTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086130	16086130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	126	345	3	ENST00000281043.3:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000281043	NM_005378.4	436	Gag/Aag																																																																														
ALK	238	MSKCC	GRCh37	2	29497971	29497971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	147	407	0	ENST00000389048.3:c.2035C>T	p.Pro679Ser	p.P679S	ENST00000389048	NM_004304.4	679	Cct/Tct																																																																														
MSH2	4436	MSKCC	GRCh37	2	47705547	47705547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	245	471	0	ENST00000233146.2:c.2347C>T	p.His783Tyr	p.H783Y	ENST00000233146	NM_000251.2	783	Cat/Tat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248683	212248683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	137	374	0	ENST00000342788.4:c.3584C>T	p.Pro1195Leu	p.P1195L	ENST00000342788	NM_005235.2	1195	cCa/cTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537981	212537981	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	243	331	0	ENST00000342788.4:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000342788	NM_005235.2	542	Gaa/Aaa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259389	89259389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	205	634	1	ENST00000336596.2:c.533G>A	p.Gly178Glu	p.G178E	ENST00000336596	NM_005233.5	178	gGa/gAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445074	89445074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	164	426	0	ENST00000336596.2:c.1394G>A	p.Gly465Glu	p.G465E	ENST00000336596	NM_005233.5	465	gGg/gAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528606	89528606	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	164	368	0	ENST00000336596.2:c.2906T>A	p.Ile969Asn	p.I969N	ENST00000336596	NM_005233.5	969	aTt/aAt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749400	41749400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	65	286	0	ENST00000226382.2:c.395C>T	p.Ala132Val	p.A132V	ENST00000226382	NM_003924.3	132	gCc/gTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106155629	106155629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	136	327	0	ENST00000380013.4:c.530C>T	p.Pro177Leu	p.P177L	ENST00000380013	NM_001127208.2	177	cCa/cTa																																																																														
CCND3	896	MSKCC	GRCh37	6	41908113	41908113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	233	388	0	ENST00000372991.4:c.409T>G	p.Leu137Val	p.L137V	ENST00000372991	NM_001760.3	137	Ttg/Gtg																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793766	89793766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	160	265	0	ENST00000336032.3:c.835T>C	p.Tyr279His	p.Y279H	ENST00000336032	NM_006813.2	279	Tat/Cat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677869	117677869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	154	352	2	ENST00000368508.3:c.4064C>T	p.Ala1355Val	p.A1355V	ENST00000368508	NM_002944.2	1355	gCc/gTc																																																																														
SYK	6850	MSKCC	GRCh37	9	93641194	93641194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	142	361	1	ENST00000375746.1:c.1540G>A	p.Gly514Arg	p.G514R	ENST00000375746	NM_001174167.1	514	Gga/Aga																																																																														
SYK	6850	MSKCC	GRCh37	9	93650908	93650908	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	100	278	0	ENST00000375746.1:c.1834G>A	p.Asp612Asn	p.D612N	ENST00000375746	NM_001174167.1	612	Gat/Aat																																																																														
TET1	80312	MSKCC	GRCh37	10	70441204	70441204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	169	409	0	ENST00000373644.4:c.4873C>T	p.Pro1625Ser	p.P1625S	ENST00000373644	NM_030625.2	1625	Cca/Tca																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64135691	64135691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151034403		P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	119	409	0	ENST00000334205.4:c.1159C>T	p.Arg387Trp	p.R387W	ENST00000334205	NM_003942.2	387	Cgg/Tgg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200421	67200421	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	236	294	0	ENST00000312629.5:c.617-2A>C		p.X206_splice	ENST00000312629	NM_003952.2	206																																																																															
SDHD	6392	MSKCC	GRCh37	11	111957636	111957636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	219	536	0	ENST00000375549.3:c.5C>T	p.Ala2Val	p.A2V	ENST00000375549	NM_003002.3	2	gCg/gTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133219243	133219243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	116	439	1	ENST00000320574.5:c.4801C>T	p.Pro1601Ser	p.P1601S	ENST00000320574	NM_006231.2	1601	Cct/Tct																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008066	29008066	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	152	367	0	ENST00000282397.4:c.703A>G	p.Ser235Gly	p.S235G	ENST00000282397	NM_002019.4	235	Agc/Ggc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95577779	95577779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	248	441	0	ENST00000343455.3:c.2131C>T	p.His711Tyr	p.H711Y	ENST00000343455	NM_177438.2	711	Cat/Tat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423581	88423581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	320	476	0	ENST00000360948.2:c.2254G>A	p.Asp752Asn	p.D752N	ENST00000360948	NM_001012338.2	752	Gat/Aat																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134458	30134458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	115	404	0	ENST00000263025.4:c.73C>T	p.Pro25Ser	p.P25S	ENST00000263025	NM_002746.2	25	Ccg/Tcg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827750	72827750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	202	573	1	ENST00000268489.5:c.8831C>T	p.Pro2944Leu	p.P2944L	ENST00000268489	NM_006885.3	2944	cCt/cTt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980052	7980052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	109	397	0	ENST00000319144.4:c.1285C>T	p.Pro429Ser	p.P429S	ENST00000319144	NM_001139.2	429	Ccc/Tcc																																																																														
CD79B	974	MSKCC	GRCh37	17	62008701	62008701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	359	431	0	ENST00000392795.3:c.115C>T	p.Pro39Ser	p.P39S	ENST00000392795	NM_001039933.1	39	Ccc/Tcc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244295	5244295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	174	443	1	ENST00000357368.4:c.1187C>T	p.Ser396Leu	p.S396L	ENST00000357368	NM_002850.3	396	tCg/tTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7166264	7166264	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	186	501	2	ENST00000302850.5:c.1762C>T	p.Gln588Ter	p.Q588*	ENST00000302850	NM_000208.2	588	Cag/Tag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10266562	10266562	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	189	481	0	ENST00000340748.4:c.1411G>T	p.Gly471Ter	p.G471*	ENST00000340748		471	Gga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292483	15292483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	152	480	1	ENST00000263388.2:c.2696G>A	p.Gly899Asp	p.G899D	ENST00000263388	NM_000435.2	899	gGc/gAc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17947943	17947943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	78	386	0	ENST00000458235.1:c.1781G>A	p.Gly594Glu	p.G594E	ENST00000458235	NM_000215.3	594	gGa/gAa																																																																														
BBC3	27113	MSKCC	GRCh37	19	47729959	47729959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	92	171	0	ENST00000449228.1:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000449228	NM_001127240.2	144	Cag/Tag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546886	9546886	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	130	440	0	ENST00000353224.5:c.1136A>C	p.Lys379Thr	p.K379T	ENST00000353224	NM_177990.2	379	aAa/aCa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39728736	39728736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	125	246	0	ENST00000361337.2:c.1016G>A	p.Gly339Glu	p.G339E	ENST00000361337	NM_003286.2	339	gGa/gAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980850	40980850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	106	415	0	ENST00000373198.4:c.1636C>T	p.Arg546Trp	p.R546W	ENST00000373198	NM_133170.3	546	Cgg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41527607	41527607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	164	432	0	ENST00000263253.7:c.1498C>T	p.Pro500Ser	p.P500S	ENST00000263253	NM_001429.3	500	Ccc/Tcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971174	21971187	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCGCCACTCGG	GCTCCGCCACTCGG	-			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	120	129	0	ENST00000304494.5:c.171_184del	p.Arg58AlafsTer57	p.R58Afs*57	ENST00000304494	NM_000077.4	57	gcCCGAGTGGCGGAGCtg/gctg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971174	21971187	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCGCCACTCGG	GCTCCGCCACTCGG	-			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	120	129	0	ENST00000304494.5:c.171_184del	p.Arg58AlafsTer57	p.R58Afs*57	ENST00000304494	NM_000077.4	57	gcCCGAGTGGCGGAGCtg/gctg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971174	21971187	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCGCCACTCGG	GCTCCGCCACTCGG	-			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	120	129	0	ENST00000304494.5:c.171_184del	p.Arg58AlafsTer57	p.R58Afs*57	ENST00000304494	NM_000077.4	57	gcCCGAGTGGCGGAGCtg/gctg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287463	46287472	+	frameshift_variant	Frame_Shift_Del	DEL	AATATTAAAA	AATATTAAAA	-			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	150	328	0	ENST00000334344.6:c.5328_5337del	p.Lys1777ValfsTer11	p.K1777Vfs*11	ENST00000334344	NM_152641.2	1774	ttAATATTAAAA/tt																																																																														
NF1	4763	MSKCC	GRCh37	17	29585361	29585362	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	130	334	0	ENST00000358273.4:c.4174-1_4174delinsAA		p.X1392_splice	ENST00000358273	NM_001042492.2	1392																																																																															
APC	324	MSKCC	GRCh37	5	112178261	112178262	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	184	383	0	ENST00000257430.4:c.6970_6971delinsTT	p.Pro2324Phe	p.P2324F	ENST00000257430	NM_000038.5	2324	CCt/TTt																																																																														
HRAS	3265	MSKCC	GRCh37	11	534285	534286	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	180	351	0	ENST00000311189.7:c.37_38delGGinsAA	p.Gly13Asn	p.G13N	ENST00000311189		13	GGt/AAt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794359	242794359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005970-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			391	572	480	0	ENST00000334409.5:c.583G>A	p.Ala195Thr	p.A195T	ENST00000334409	NM_005018.2	195	Gcc/Acc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478803	57478803	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005970-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			877	271	340	0	ENST00000371085.3:c.389A>G	p.Tyr130Cys	p.Y130C	ENST00000371085	NM_000516.4	130	tAc/tGc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650870	48650870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005970-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			820	351	265	0	ENST00000376670.3:c.739C>T	p.Arg247Cys	p.R247C	ENST00000376670	NM_002049.3	247	Cgc/Tgc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220632	1220632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005970-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			717	299	414	1	ENST00000326873.7:c.650C>T	p.Pro217Leu	p.P217L	ENST00000326873	NM_000455.4	217	cCg/cTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244890	41244891	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0005970-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			858	82	364	1	ENST00000357654.3:c.2657_2658del	p.Ser886CysfsTer16	p.S886Cfs*16	ENST00000357654	NM_007294.3	886	tCT/t																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557001	95557370	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	CTGTAAAAAATCCAAACAGCTTGAATTAGAAGTCAGAAGTATTTATTATCATTGTCAATCAGCATTTAGTGTGCACTCTCAGGCCAGGAGTCCCATGTATAAGCTGACACCACACAAAGGAAACACGCGTTACGACTTACTGCAATTGCATACCCCCGACAGACAGGGCTGCCGTCTAGTCTTTATTACAGCATTATTTCATAAAAACAGAAGGAAAAAAGAGAAGTCAATCAGATTACAAACAGAAATCTGACAACAGCACACCACAGTGTAAATATTTTTCAGAATCATTAGTTTACAATATCTTTGTGAACTTTTCCCCTTTGATGTTTTTAAGTTAATGTTTTTTCCATGTACATTTTTTGCTTAC	CTGTAAAAAATCCAAACAGCTTGAATTAGAAGTCAGAAGTATTTATTATCATTGTCAATCAGCATTTAGTGTGCACTCTCAGGCCAGGAGTCCCATGTATAAGCTGACACCACACAAAGGAAACACGCGTTACGACTTACTGCAATTGCATACCCCCGACAGACAGGGCTGCCGTCTAGTCTTTATTACAGCATTATTTCATAAAAACAGAAGGAAAAAAGAGAAGTCAATCAGATTACAAACAGAAATCTGACAACAGCACACCACAGTGTAAATATTTTTCAGAATCATTAGTTTACAATATCTTTGTGAACTTTTCCCCTTTGATGTTTTTAAGTTAATGTTTTTTCCATGTACATTTTTTGCTTAC	-			P-0005970-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			694	108	258	0	ENST00000343455.3:c.5603+1_5604-1del		p.X1868_splice	ENST00000343455	NM_177438.2	1868																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557447	95557539	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	CTGCAATCAAAATGAAAGAATAATATGAATAATATCTCTGAAGTTGTTTTTAATTTTGTGGGTTTTTTTCTTTCTAAAGGGAGCCAACAATAC	CTGCAATCAAAATGAAAGAATAATATGAATAATATCTCTGAAGTTGTTTTTAATTTTGTGGGTTTTTTTCTTTCTAAAGGGAGCCAACAATAC	-			P-0005970-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			698	138	228	1	ENST00000343455.3:c.5527+1_5528-1del		p.X1843_splice	ENST00000343455	NM_177438.2	1843																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56770132	56770132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	365	459	1	ENST00000337432.4:c.128C>T	p.Pro43Leu	p.P43L	ENST00000337432	NM_058216.2	43	cCc/cTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	211	561	0	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	236	433	1	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317572	1317572	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	216	332	0				ENST00000381566																																																																																	
ERG	2078	MSKCC	GRCh37	21	39762961	39762961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	182	501	0	ENST00000288319.7:c.875C>T	p.Pro292Leu	p.P292L	ENST00000288319	NM_182918.3	292	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	82	337	0				ENST00000310581	NM_198253.2																																																																																
FLT1	2321	MSKCC	GRCh37	13	28891705	28891705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	130	612	1	ENST00000282397.4:c.3316G>A	p.Asp1106Asn	p.D1106N	ENST00000282397	NM_002019.4	1106	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076902	41076902	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	210	572	1	ENST00000373198.4:c.1518G>A	p.Trp506Ter	p.W506*	ENST00000373198	NM_133170.3	506	tgG/tgA																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199343	16199343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	289	591	1	ENST00000375759.3:c.116C>T	p.Pro39Leu	p.P39L	ENST00000375759	NM_015001.2	39	cCc/cTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256144	16256144	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138355680		P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	282	640	0	ENST00000375759.3:c.3409C>T	p.Arg1137Cys	p.R1137C	ENST00000375759	NM_015001.2	1137	Cgt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259577	16259577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	216	415	0	ENST00000375759.3:c.6842C>T	p.Ser2281Phe	p.S2281F	ENST00000375759	NM_015001.2	2281	tCt/tTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261878	16261878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	167	266	0	ENST00000375759.3:c.9143C>T	p.Thr3048Met	p.T3048M	ENST00000375759	NM_015001.2	3048	aCg/aTg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965601	25965601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	140	478	1	ENST00000435504.4:c.3605C>T	p.Ser1202Phe	p.S1202F	ENST00000435504		1202	tCc/tTc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47672740	47672740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	136	603	1	ENST00000233146.2:c.1330C>T	p.Arg444Cys	p.R444C	ENST00000233146	NM_000251.2	444	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295786	212295786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	164	512	0	ENST00000342788.4:c.2527G>A	p.Asp843Asn	p.D843N	ENST00000342788	NM_005235.2	843	Gat/Aat																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52692265	52692265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	263	652	0	ENST00000394830.3:c.595C>T	p.Pro199Ser	p.P199S	ENST00000394830	NM_018313.4	199	Cca/Tca																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522586	176522586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	374	492	0	ENST00000292408.4:c.1683C>G	p.Phe561Leu	p.F561L	ENST00000292408	NM_213647.1	561	ttC/ttG																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636877	176636877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	207	468	0	ENST00000439151.2:c.1477C>T	p.Pro493Ser	p.P493S	ENST00000439151	NM_022455.4	493	Cct/Tct																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665396	176665396	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	127	535	0	ENST00000439151.2:c.4080A>T	p.Glu1360Asp	p.E1360D	ENST00000439151	NM_022455.4	1360	gaA/gaT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965719	93965719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	223	748	1	ENST00000369303.4:c.2209G>A	p.Gly737Arg	p.G737R	ENST00000369303	NM_004440.3	737	Gga/Aga																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455063	50455063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	192	519	0	ENST00000331340.3:c.610G>A	p.Gly204Arg	p.G204R	ENST00000331340	NM_006060.4	204	Gga/Aga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509625	106509625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	374	568	1	ENST00000359195.3:c.1619G>A	p.Gly540Glu	p.G540E	ENST00000359195	NM_002649.2	540	gGg/gAg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87549095	87549095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	225	522	0	ENST00000277120.3:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000277120		551	cGa/cAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231374	98231374	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	222	422	0	ENST00000331920.6:c.1909A>G	p.Thr637Ala	p.T637A	ENST00000331920	NM_000264.3	637	Acc/Gcc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115729	8115729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	306	640	0	ENST00000346208.3:c.1075G>A	p.Glu359Lys	p.E359K	ENST00000346208		359	Gaa/Aaa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851569	63851569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	168	285	0	ENST00000279873.7:c.2347C>T	p.Pro783Ser	p.P783S	ENST00000279873	NM_032199.2	783	Ccc/Tcc																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514163	69514163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	338	600	0	ENST00000294312.3:c.518C>T	p.Pro173Leu	p.P173L	ENST00000294312	NM_005117.2	173	cCa/cTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425385	49425385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	310	676	0	ENST00000301067.7:c.13103C>T	p.Thr4368Ile	p.T4368I	ENST00000301067	NM_003482.3	4368	aCc/aTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433727	49433727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	374	648	0	ENST00000301067.7:c.7826C>T	p.Pro2609Leu	p.P2609L	ENST00000301067	NM_003482.3	2609	cCa/cTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434853	49434853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	322	581	0	ENST00000301067.7:c.6700C>T	p.Pro2234Ser	p.P2234S	ENST00000301067	NM_003482.3	2234	Ccc/Tcc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929332	32929332	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	301	844	0	ENST00000380152.3:c.7342A>G	p.Lys2448Glu	p.K2448E	ENST00000380152		2448	Aag/Gag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336181	73336181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	91	593	0	ENST00000377767.4:c.2222G>A	p.Arg741Lys	p.R741K	ENST00000377767	NM_014953.3	741	aGa/aAa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528253	103528253	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	17	88	0	ENST00000355739.4:c.3561A>T	p.Ter1187TyrextTer8	p.*1187Yext*8	ENST00000355739	NM_000123.3	1187	taA/taT																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569706	95569706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	191	371	0	ENST00000343455.3:c.4027C>T	p.Leu1343Phe	p.L1343F	ENST00000343455	NM_177438.2	1343	Ctt/Ttt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117779	70117779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	473	639	0	ENST00000245479.2:c.247G>A	p.Gly83Ser	p.G83S	ENST00000245479	NM_000346.3	83	Ggc/Agc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145743	11145743	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199962502		P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	462	642	1	ENST00000344626.4:c.4105C>T	p.Arg1369Cys	p.R1369C	ENST00000344626	NM_003072.3	1369	Cgt/Tgt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560985	9560985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	265	470	1	ENST00000353224.5:c.797G>A	p.Arg266Lys	p.R266K	ENST00000353224	NM_177990.2	266	aGg/aAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419857	41419857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	284	530	0	ENST00000373198.4:c.464C>T	p.Thr155Ile	p.T155I	ENST00000373198	NM_133170.3	155	aCt/aTt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281191	46281191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	364	791	0	ENST00000371998.3:c.3988A>G	p.Ser1330Gly	p.S1330G	ENST00000371998		1330	Agt/Ggt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410907	63410907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	245	333	0	ENST00000330258.3:c.2260C>T	p.Pro754Ser	p.P754S	ENST00000330258	NM_152424.3	754	Cca/Tca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702537	52702538	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	171	469	0	ENST00000394830.3:c.360dup	p.Asn121Ter	p.N121*	ENST00000394830	NM_018313.4	120	-/T																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256561	115256562	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	146	477	0	ENST00000369535.4:c.149_150delinsTT	p.Thr50Ile	p.T50I	ENST00000369535	NM_002524.4	50	aCC/aTT																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514219	69514220	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	328	633	0	ENST00000294312.3:c.461_462delinsTT	p.Tyr154Phe	p.Y154F	ENST00000294312	NM_005117.2	154	tAC/tTT																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420213	88420214	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	220	557	1	ENST00000360948.2:c.2472_2473delinsTT	p.His825Tyr	p.H825Y	ENST00000360948	NM_001012338.2	824	ctCCat/ctTTat																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041539	14041540	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	247	534	0	ENST00000311895.7:c.2086_2087delinsTT	p.Pro696Leu	p.P696L	ENST00000311895	NM_005236.2	696	CCa/TTa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877399	89877400	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0006034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	303	507	0	ENST00000389301.3:c.363_364delinsTA	p.Gly122Arg	p.G122R	ENST00000389301	NM_000135.2	121	gtGGga/gtTAga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	151	396	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	226	267	0				ENST00000310581	NM_198253.2																																																																																
SMO	6608	MSKCC	GRCh37	7	128845466	128845466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	233	412	0	ENST00000249373.3:c.763G>A	p.Asp255Asn	p.D255N	ENST00000249373	NM_005631.4	255	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	91	322	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	182	442	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266709	198266709	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	135	389	0	ENST00000335508.6:c.2223G>T	p.Lys741Asn	p.K741N	ENST00000335508	NM_012433.2	741	aaG/aaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	64	318	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0006097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	66	365	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	409	970	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	191	466	0	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900371	101900371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	247	331	0	ENST00000374994.4:c.805G>A	p.Asp269Asn	p.D269N	ENST00000374994	NM_004612.2	269	Gac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941858	44941858	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	419	429	0	ENST00000377967.4:c.3182C>G	p.Ser1061Ter	p.S1061*	ENST00000377967	NM_021140.2	1061	tCa/tGa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123202503	123202504	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	360	314	0	ENST00000218089.9:c.2356dup	p.Gln786ProfsTer8	p.Q786Pfs*8	ENST00000218089	NM_001042749.1	785	-/C																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923425	9923426	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0006097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	127	770	0	ENST00000330684.3:c.1861_1862inv	p.Asn621Phe	p.N621F	ENST00000330684	NM_001134407.1	621	AAt/TTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	146	236	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	152	432	2	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0006129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	166	348	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923060	44923060	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0006129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	74	128	0	ENST00000377967.4:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000377967	NM_021140.2	641	Cag/Tag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65300340	65300340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	42	203	0	ENST00000342505.4:c.3370G>A	p.Val1124Ile	p.V1124I	ENST00000342505	NM_002227.2	1124	Gtt/Att																																																																														
APC	324	MSKCC	GRCh37	5	112174040	112174040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	123	367	0	ENST00000257430.4:c.2749G>A	p.Asp917Asn	p.D917N	ENST00000257430	NM_000038.5	917	Gat/Aat																																																																														
BLM	641	MSKCC	GRCh37	15	91292929	91292929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	95	296	0	ENST00000355112.3:c.431C>T	p.Ser144Leu	p.S144L	ENST00000355112	NM_000057.2	144	tCa/tTa																																																																														
CDH1	999	MSKCC	GRCh37	16	68857394	68857394	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	149	430	1	ENST00000261769.5:c.2029C>T	p.Gln677Ter	p.Q677*	ENST00000261769	NM_004360.3	677	Caa/Taa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0006142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	213	296	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	48	291	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151960145	151960145	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	202	443	2	ENST00000262189.6:c.1255C>T	p.Gln419Ter	p.Q419*	ENST00000262189	NM_170606.2	419	Caa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0006142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	247	279	1				ENST00000310581	NM_198253.2																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178095680	178095680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	307	531	1	ENST00000397062.3:c.1651C>T	p.His551Tyr	p.H551Y	ENST00000397062	NM_006164.4	551	Cac/Tac																																																																														
ATM	472	MSKCC	GRCh37	11	108121544	108121544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	100	428	0	ENST00000278616.4:c.1352G>A	p.Arg451His	p.R451H	ENST00000278616	NM_000051.3	451	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603120	48603120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	49	370	0	ENST00000342988.3:c.1421C>T	p.Ser474Leu	p.S474L	ENST00000342988	NM_005359.5	474	tCa/tTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023664	27023673	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCCGCCTC	CCTCCGCCTC	-			P-0006142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	261	344	0	ENST00000324856.7:c.771_780del	p.Ser258ArgfsTer102	p.S258Rfs*102	ENST00000324856	NM_006015.4	257	gCCTCCGCCTCc/gc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446027	49446027	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	648	586	0	ENST00000301067.7:c.1439del	p.Pro480LeufsTer450	p.P480Lfs*450	ENST00000301067	NM_003482.3	480	cCt/ct																																																																														
MTOR	2475	MSKCC	GRCh37	1	11319334	11319334	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			300	78	554	0	ENST00000361445.4:c.133C>T	p.Gln45Ter	p.Q45*	ENST00000361445	NM_004958.3	45	Cag/Tag																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745569	162745569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			251	95	485	1	ENST00000367921.3:c.1984C>T	p.Leu662Phe	p.L662F	ENST00000367921	NM_006182.2	662	Ctc/Ttc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085957	16085957	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			165	53	491	1	ENST00000281043.3:c.1133A>G	p.Glu378Gly	p.E378G	ENST00000281043	NM_005378.4	378	gAg/gGg																																																																														
ALK	238	MSKCC	GRCh37	2	29498327	29498327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			208	22	620	0	ENST00000389048.3:c.1853G>A	p.Gly618Glu	p.G618E	ENST00000389048	NM_004304.4	618	gGa/gAa																																																																														
ALK	238	MSKCC	GRCh37	2	29940471	29940471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			283	32	680	0	ENST00000389048.3:c.760C>T	p.Pro254Ser	p.P254S	ENST00000389048	NM_004304.4	254	Cct/Tct																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630407	47630407	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			223	68	592	0	ENST00000233146.2:c.77T>C	p.Met26Thr	p.M26T	ENST00000233146	NM_000251.2	26	aTg/aCg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637434	47637434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			244	96	599	0	ENST00000233146.2:c.568C>T	p.Leu190Phe	p.L190F	ENST00000233146	NM_000251.2	190	Ctc/Ttc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30686266	30686266	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			384	84	487	0	ENST00000359013.4:c.197A>T	p.Asn66Ile	p.N66I	ENST00000359013	NM_001024847.2	66	aAc/aTc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713513	30713513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			257	78	432	4	ENST00000359013.4:c.913C>T	p.Pro305Ser	p.P305S	ENST00000359013	NM_001024847.2	305	Ccc/Tcc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713519	30713519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			261	76	432	1	ENST00000359013.4:c.919G>A	p.Glu307Lys	p.E307K	ENST00000359013	NM_001024847.2	307	Gag/Aag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713601	30713601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202168735		P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			296	87	396	0	ENST00000359013.4:c.1001C>T	p.Thr334Met	p.T334M	ENST00000359013	NM_001024847.2	334	aCg/aTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437777	52437777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			366	117	894	0	ENST00000460680.1:c.1384C>T	p.Pro462Ser	p.P462S	ENST00000460680	NM_004656.3	462	Cct/Tct																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403565	138403565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			337	85	674	0	ENST00000289153.2:c.2217G>T	p.Lys739Asn	p.K739N	ENST00000289153	NM_006219.2	739	aaG/aaT																																																																														
ATR	545	MSKCC	GRCh37	3	142222283	142222283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			227	83	380	0	ENST00000350721.4:c.5209C>T	p.His1737Tyr	p.H1737Y	ENST00000350721	NM_001184.3	1737	Cat/Tat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916642	178916642	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			397	161	862	0	ENST00000263967.3:c.29T>G	p.Leu10Arg	p.L10R	ENST00000263967	NM_006218.2	10	cTg/cGg																																																																														
TP63	8626	MSKCC	GRCh37	3	189612184	189612184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			296	68	604	0	ENST00000264731.3:c.1936C>T	p.Leu646Phe	p.L646F	ENST00000264731	NM_003722.4	646	Ctc/Ttc																																																																														
KDR	3791	MSKCC	GRCh37	4	55971017	55971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			339	32	666	0	ENST00000263923.4:c.1780C>T	p.His594Tyr	p.H594Y	ENST00000263923	NM_002253.2	594	Cat/Tat																																																																														
TERT	7015	MSKCC	GRCh37	5	1294057	1294057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			369	27	765	1	ENST00000310581.5:c.944G>A	p.Arg315His	p.R315H	ENST00000310581	NM_198253.2	315	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			89	94	290	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			283	161	564	0	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495375	149495375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			219	83	504	0	ENST00000261799.4:c.3272A>G	p.Asp1091Gly	p.D1091G	ENST00000261799	NM_002609.3	1091	gAt/gGt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166244	32166245	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			290	89	702	0	ENST00000375023.3:c.4709_4710delinsTT	p.Pro1570Leu	p.P1570L	ENST00000375023	NM_004557.3	1570	cCC/cTT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181896	32181896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			250	61	708	0	ENST00000375023.3:c.2158G>A	p.Gly720Ser	p.G720S	ENST00000375023	NM_004557.3	720	Ggc/Agc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641054	117641054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			277	77	573	0	ENST00000368508.3:c.5917G>A	p.Gly1973Arg	p.G1973R	ENST00000368508	NM_002944.2	1973	Gga/Aga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004308	150004308	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			350	123	671	1	ENST00000253339.5:c.1917T>A	p.Phe639Leu	p.F639L	ENST00000253339		639	ttT/ttA																																																																														
PARK2	5071	MSKCC	GRCh37	6	162622218	162622218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			268	95	550	0	ENST00000366898.1:c.479G>A	p.Gly160Glu	p.G160E	ENST00000366898	NM_004562.2	160	gGa/gAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985560	2985561	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			260	114	402	0	ENST00000396946.4:c.250_251delinsAA	p.Gly84Lys	p.G84K	ENST00000396946	NM_032415.4	84	GGg/AAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50358670	50358670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			215	65	238	1	ENST00000331340.3:c.13G>A	p.Glu5Lys	p.E5K	ENST00000331340	NM_006060.4	5	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55269017	55269018	+	missense_variant	Missense_Mutation	DNP	CC	CC	TG			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			214	100	438	0	ENST00000275493.2:c.3083_3084delinsTG	p.Ser1028Leu	p.S1028L	ENST00000275493	NM_005228.3	1028	tCC/tTG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151851484	151851484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			206	173	581	0	ENST00000262189.6:c.12007C>T	p.Pro4003Ser	p.P4003S	ENST00000262189	NM_170606.2	4003	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317921	8317921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			269	49	628	0	ENST00000356435.5:c.5692C>T	p.Arg1898Cys	p.R1898C	ENST00000356435		1898	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341941	8341941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			241	44	385	0	ENST00000356435.5:c.4699G>A	p.Asp1567Asn	p.D1567N	ENST00000356435		1567	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485926	8485926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			280	70	684	1	ENST00000356435.5:c.2891C>T	p.Pro964Leu	p.P964L	ENST00000356435		964	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485962	8485962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			288	74	720	0	ENST00000356435.5:c.2855C>T	p.Thr952Ile	p.T952I	ENST00000356435		952	aCc/aTc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570260	87570260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			152	56	410	0	ENST00000277120.3:c.2000C>T	p.Ser667Leu	p.S667L	ENST00000277120		667	tCg/tTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399994	139399994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			271	67	569	1	ENST00000277541.6:c.4354C>T	p.Pro1452Ser	p.P1452S	ENST00000277541	NM_017617.3	1452	Ccc/Tcc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137784	64137784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			239	134	757	1	ENST00000334205.4:c.1885C>T	p.Arg629Cys	p.R629C	ENST00000334205	NM_003942.2	629	Cgc/Tgc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125514026	125514026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			311	66	622	0	ENST00000428830.2:c.964C>T	p.Arg322Cys	p.R322C	ENST00000428830	NM_001114121.2	322	Cgc/Tgc																																																																														
RAD52	5893	MSKCC	GRCh37	12	1039289	1039289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11571421		P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			250	156	595	0	ENST00000358495.3:c.208C>T	p.Arg70Trp	p.R70W	ENST00000358495	NM_134424.2	70	Cgg/Tgg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435169	18435169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			436	87	648	0	ENST00000266497.5:c.154C>T	p.Pro52Ser	p.P52S	ENST00000266497		52	Cca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434663	49434663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			248	52	502	1	ENST00000301067.7:c.6890C>T	p.Pro2297Leu	p.P2297L	ENST00000301067	NM_003482.3	2297	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444788	49444789	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			271	66	665	0	ENST00000301067.7:c.2677_2678delinsTT	p.Pro893Phe	p.P893F	ENST00000301067	NM_003482.3	893	CCc/TTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444797	49444797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			265	59	657	0	ENST00000301067.7:c.2669C>T	p.Ser890Phe	p.S890F	ENST00000301067	NM_003482.3	890	tCc/tTc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145425	58145425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			346	114	499	0	ENST00000257904.6:c.76C>T	p.Pro26Ser	p.P26S	ENST00000257904	NM_000075.3	26	Ccc/Tcc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622502	28622502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			249	37	497	0	ENST00000241453.7:c.1115G>A	p.Arg372Lys	p.R372K	ENST00000241453	NM_004119.2	372	aGg/aAg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28626813	28626813	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			166	18	422	0	ENST00000241453.7:c.485-2A>G		p.X162_splice	ENST00000241453	NM_004119.2	162																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912123	32912123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			433	117	1133	0	ENST00000380152.3:c.3631G>A	p.Glu1211Lys	p.E1211K	ENST00000380152		1211	Gaa/Aaa																																																																														
AKT1	207	MSKCC	GRCh37	14	105238774	105238775	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			196	59	580	0	ENST00000349310.3:c.1187_1188delinsTT	p.Ser396Phe	p.S396F	ENST00000349310	NM_001014432.1	396	tCC/tTT																																																																														
MGA	23269	MSKCC	GRCh37	15	42052689	42052689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			277	125	875	0	ENST00000219905.7:c.7360C>T	p.His2454Tyr	p.H2454Y	ENST00000219905	NM_001164273.1	2454	Cat/Tat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670452	88670452	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143617169		P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			244	57	590	0	ENST00000360948.2:c.1234G>A	p.Glu412Lys	p.E412K	ENST00000360948	NM_001012338.2	412	Gaa/Aaa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467827	99467827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			244	162	668	0	ENST00000268035.6:c.2696G>A	p.Gly899Glu	p.G899E	ENST00000268035	NM_000875.3	899	gGg/gAg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500550	99500550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			211	142	523	1	ENST00000268035.6:c.3983G>A	p.Gly1328Asp	p.G1328D	ENST00000268035	NM_000875.3	1328	gGc/gAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354414	354414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201609463		P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			233	61	663	1	ENST00000262320.3:c.1144C>T	p.Arg382Cys	p.R382C	ENST00000262320	NM_003502.3	382	Cgc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857524	9857524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			134	44	363	2	ENST00000330684.3:c.3877G>A	p.Asp1293Asn	p.D1293N	ENST00000330684	NM_001134407.1	1293	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032279	10032279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			188	41	448	0	ENST00000330684.3:c.544G>A	p.Glu182Lys	p.E182K	ENST00000330684	NM_001134407.1	182	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579717	7579717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			130	72	591	0	ENST00000269305.4:c.79C>T	p.Pro27Ser	p.P27S	ENST00000269305	NM_001126112.2	27	Cct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29701036	29701036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			193	12	330	0	ENST00000358273.4:c.8383G>A	p.Asp2795Asn	p.D2795N	ENST00000358273	NM_001042492.2	2795	Gac/Aac																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369299	40369299	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			317	105	825	0	ENST00000293328.3:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000293328	NM_012448.3	420	tCc/tTc																																																																														
YES1	7525	MSKCC	GRCh37	18	745842	745842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			266	65	418	1	ENST00000314574.4:c.590C>T	p.Ser197Phe	p.S197F	ENST00000314574	NM_005433.3	197	tCt/tTt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118990	3118990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			214	31	677	0	ENST00000078429.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000078429	NM_002067.2	225	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222924	5222925	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			185	29	453	0	ENST00000357368.4:c.2878_2879delinsAA	p.Gly960Lys	p.G960K	ENST00000357368	NM_002850.3	960	GGg/AAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5240214	5240214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			138	53	505	0	ENST00000357368.4:c.1700G>A	p.Arg567Gln	p.R567Q	ENST00000357368	NM_002850.3	567	cGg/cAg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10249209	10249209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			271	42	630	0	ENST00000340748.4:c.3973C>T	p.Pro1325Ser	p.P1325S	ENST00000340748		1325	Cct/Tct																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10279006	10279007	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			284	69	612	0	ENST00000340748.4:c.754_755delinsTT	p.Pro252Leu	p.P252L	ENST00000340748		252	CCa/TTa																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257552	19257552	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			127	64	563	0	ENST00000162023.5:c.674C>T	p.Ser225Phe	p.S225F	ENST00000162023		225	tCc/tTc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383635	42383636	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			382	62	825	0	ENST00000221972.3:c.410_411delinsAA	p.Gly137Glu	p.G137E	ENST00000221972	NM_021601.3	137	gGG/gAA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523348	9523348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			275	51	582	1	ENST00000353224.5:c.1889G>A	p.Gly630Glu	p.G630E	ENST00000353224	NM_177990.2	630	gGg/gAg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023853	31023853	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			295	61	534	0	ENST00000375687.4:c.3338A>G	p.Gln1113Arg	p.Q1113R	ENST00000375687	NM_015338.5	1113	cAg/cGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40899090	40899090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			240	56	810	0	ENST00000373198.4:c.2180C>T	p.Pro727Leu	p.P727L	ENST00000373198	NM_133170.3	727	cCa/cTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514563	41514563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			222	44	420	0	ENST00000373198.4:c.98C>T	p.Ser33Phe	p.S33F	ENST00000373198	NM_133170.3	33	tCc/tTc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314906	1314906	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			205	67	648	0				ENST00000381566																																																																																	
BCOR	54880	MSKCC	GRCh37	X	39930342	39930342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			98	60	323	0	ENST00000378444.4:c.3122C>T	p.Ser1041Phe	p.S1041F	ENST00000378444	NM_001123385.1	1041	tCc/tTc																																																																														
AR	367	MSKCC	GRCh37	X	66766249	66766249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			55	33	231	0	ENST00000374690.3:c.1261G>A	p.Gly421Arg	p.G421R	ENST00000374690	NM_000044.3	421	Gga/Aga																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025629	1025660	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACGGCGGATGAGCTCAGGCTTCTGCATGAGAG	ACGGCGGATGAGCTCAGGCTTCTGCATGAGAG	-			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			197	125	526	0	ENST00000358495.3:c.726-11_746del		p.X242_splice	ENST00000358495	NM_134424.2	242																																																																															
TET1	80312	MSKCC	GRCh37	10	70404595	70404614	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCATCGAGGTGGAGAAGT	AGGCATCGAGGTGGAGAAGT	G			P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			317	98	723	0	ENST00000373644.4:c.2109_2128delinsG	p.Ile705HisfsTer8	p.I705Hfs*8	ENST00000373644	NM_030625.2	703	acAGGCATCGAGGTGGAGAAGTgg/acGgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0006155-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			346	46	758	1	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	159	365	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	164	280	0				ENST00000310581	NM_198253.2																																																																																
CD274	29126	MSKCC	GRCh37	9	5463007	5463007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	145	422	0	ENST00000381577.3:c.568C>G	p.Leu190Val	p.L190V	ENST00000381577	NM_014143.3	190	Ctt/Gtt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0006192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	182	378	0				ENST00000310581	NM_198253.2																																																																																
SPEN	23013	MSKCC	GRCh37	1	16202896	16202896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	645	593	0	ENST00000375759.3:c.604G>A	p.Glu202Lys	p.E202K	ENST00000375759	NM_015001.2	202	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248773	212248773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	330	253	0	ENST00000342788.4:c.3494C>T	p.Pro1165Leu	p.P1165L	ENST00000342788	NM_005235.2	1165	cCa/cTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566709	212566709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	563	360	2	ENST00000342788.4:c.1472G>A	p.Arg491Lys	p.R491K	ENST00000342788	NM_005235.2	491	aGa/aAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549439	187549439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	1160	490	0	ENST00000441802.2:c.4679C>G	p.Pro1560Arg	p.P1560R	ENST00000441802	NM_005245.3	1560	cCg/cGg																																																																														
PGR	5241	MSKCC	GRCh37	11	100933397	100933397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	837	721	0	ENST00000325455.5:c.1993G>A	p.Glu665Lys	p.E665K	ENST00000325455	NM_001202474.3	665	Gaa/Aaa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15989718	15989718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	547	386	0	ENST00000268712.3:c.3055C>T	p.Pro1019Ser	p.P1019S	ENST00000268712	NM_006311.3	1019	Cct/Tct																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210675	2210675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	335	613	1	ENST00000398665.3:c.1172C>T	p.Pro391Leu	p.P391L	ENST00000398665	NM_032482.2	391	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0006194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	890	404	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	431	429	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178097233	178097233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	151	638	0	ENST00000397062.3:c.481C>G	p.Gln161Glu	p.Q161E	ENST00000397062	NM_006164.4	161	Cag/Gag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225346669	225346669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	284	571	0	ENST00000264414.4:c.1969C>T	p.His657Tyr	p.H657Y	ENST00000264414	NM_003590.4	657	Cat/Tat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843416	3843416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	166	438	1	ENST00000262367.5:c.1187C>A	p.Thr396Lys	p.T396K	ENST00000262367	NM_004380.2	396	aCg/aAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29490346	29490346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	151	538	0	ENST00000358273.4:c.431C>G	p.Ser144Cys	p.S144C	ENST00000358273	NM_001042492.2	144	tCt/tGt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076933	41076933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	151	571	0	ENST00000373198.4:c.1487G>T	p.Gly496Val	p.G496V	ENST00000373198	NM_133170.3	496	gGg/gTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797271	135797272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	504	597	0	ENST00000298552.3:c.597dup	p.Val200ArgfsTer18	p.V200Rfs*18	ENST00000298552	NM_001162426.1	199	-/C																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	379	350	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	292	484	0	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48941653	48941653	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	112	301	0	ENST00000267163.4:c.963C>G	p.Tyr321Ter	p.Y321*	ENST00000267163	NM_000321.2	321	taC/taG																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	94	261	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856640	111856640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	180	286	0	ENST00000341259.2:c.691G>A	p.Asp231Asn	p.D231N	ENST00000341259	NM_005475.2	231	Gat/Aat																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856356	45856356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	287	514	0	ENST00000391945.4:c.1816G>C	p.Glu606Gln	p.E606Q	ENST00000391945	NM_000400.3	606	Gag/Cag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78432598	78432598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	158	264	0	ENST00000370768.2:c.385G>C	p.Glu129Gln	p.E129Q	ENST00000370768	NM_003902.3	129	Gaa/Caa																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	265	347	3	ENST00000368323.3:c.270G>T	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atT																																																																														
VHL	7428	MSKCC	GRCh37	3	10183659	10183659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	271	512	1	ENST00000256474.2:c.128C>T	p.Ser43Phe	p.S43F	ENST00000256474	NM_000551.3	43	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55946214	55946214	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	227	495	0	ENST00000263923.4:c.3965A>C	p.Glu1322Ala	p.E1322A	ENST00000263923	NM_002253.2	1322	gAg/gCg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285798	87285798	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	260	477	0	ENST00000277120.3:c.135C>A	p.Cys45Ter	p.C45*	ENST00000277120		45	tgC/tgA																																																																														
KDM5A	5927	MSKCC	GRCh37	12	442781	442781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	153	319	0	ENST00000399788.2:c.1525C>T	p.His509Tyr	p.H509Y	ENST00000399788	NM_001042603.1	509	Cat/Tat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46298815	46298815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	133	360	0	ENST00000334344.6:c.5462C>A	p.Thr1821Lys	p.T1821K	ENST00000334344	NM_152641.2	1821	aCa/aAa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56490296	56490296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	129	335	0	ENST00000267101.3:c.2065C>T	p.Pro689Ser	p.P689S	ENST00000267101	NM_001982.3	689	Cct/Tct																																																																														
RB1	5925	MSKCC	GRCh37	13	49037866	49037866	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	74	322	0	ENST00000267163.4:c.2107-1G>A		p.X703_splice	ENST00000267163	NM_000321.2	703																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99465586	99465586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	142	297	0	ENST00000268035.6:c.2411A>G	p.His804Arg	p.H804R	ENST00000268035	NM_000875.3	804	cAc/cGc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788662	3788662	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	395	426	0	ENST00000262367.5:c.4292T>G	p.Ile1431Ser	p.I1431S	ENST00000262367	NM_004380.2	1431	aTt/aGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991796	72991796	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1357	298	599	0	ENST00000268489.5:c.2249A>G	p.His750Arg	p.H750R	ENST00000268489	NM_006885.3	750	cAt/cGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29490318	29490318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	116	411	0	ENST00000358273.4:c.403C>T	p.Arg135Trp	p.R135W	ENST00000358273	NM_001042492.2	135	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866707	37866707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	233	396	0	ENST00000269571.5:c.874G>C	p.Gly292Arg	p.G292R	ENST00000269571		292	Ggc/Cgc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1327792	1327792	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	203	367	0	ENST00000381566.1:c.89T>A	p.Val30Glu	p.V30E	ENST00000381566		30	gTa/gAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44833957	44833957	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	169	645	1	ENST00000377967.4:c.381G>A	p.Trp127Ter	p.W127*	ENST00000377967	NM_021140.2	127	tgG/tgA																																																																														
AR	367	MSKCC	GRCh37	X	66766040	66766040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	247	502	1	ENST00000374690.3:c.1052G>A	p.Gly351Glu	p.G351E	ENST00000374690	NM_000044.3	351	gGa/gAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427029	49427040	+	inframe_deletion	In_Frame_Del	DEL	GGGCCCAAAGCT	GGGCCCAAAGCT	-			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	155	322	0	ENST00000301067.7:c.11448_11459del	p.Ala3817_Pro3820del	p.A3817_P3820del	ENST00000301067	NM_003482.3	3816	ggAGCTTTGGGCCCc/ggc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023753	27023753	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	616	453	0	ENST00000324856.7:c.862del	p.Gln288SerfsTer75	p.Q288Sfs*75	ENST00000324856	NM_006015.4	287	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023728	27023749	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCTCCGCGGCCGGCGGGGGA	CCCCTCCGCGGCCGGCGGGGGA	-			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	600	453	0	ENST00000324856.7:c.834_855del	p.Pro279LeufsTer77	p.P279Lfs*77	ENST00000324856	NM_006015.4	278	ggCCCCTCCGCGGCCGGCGGGGGA/gg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118363844	118363845	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCCACCAGTTCTTACTGAGGTC			P-0006209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	121	480	0	ENST00000534358.1:c.5079_5101dup	p.Ser1701IlefsTer17	p.S1701Ifs*17	ENST00000534358	NM_005933.3	1693	gat/gATCCACCAGTTCTTACTGAGGTCat																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0006218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	70	361	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	49	376	0				ENST00000310581	NM_198253.2																																																																																
TRAF7	84231	MSKCC	GRCh37	16	2225306	2225306	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	62	541	1	ENST00000326181.6:c.1391G>A	p.Trp464Ter	p.W464*	ENST00000326181	NM_032271.2	464	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	66	468	0	ENST00000269305.4:c.775G>A	p.Asp259Asn	p.D259N	ENST00000269305	NM_001126112.2	259	Gac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44833923	44833924	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	67	335	0	ENST00000377967.4:c.349dup	p.Gln117ProfsTer9	p.Q117Pfs*9	ENST00000377967	NM_021140.2	116	tac/taCc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224554	123224555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	25	402	0	ENST00000218089.9:c.3408dup	p.Ser1137Ter	p.S1137*	ENST00000218089	NM_001042749.1	1136	gat/gaTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105635	27105636	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0006218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	32	659	0	ENST00000324856.7:c.5247_5248dup	p.Phe1750CysfsTer21	p.F1750Cfs*21	ENST00000324856	NM_006015.4	1749	agg/agGTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039668	47039668	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			20	94	381	0	ENST00000329236.7:c.887del	p.Gly296AlafsTer111	p.G296Afs*111	ENST00000329236	NM_001204466.1	296	Ggc/gc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	65	591	0				ENST00000310581	NM_198253.2																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	20	594	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	46	667	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	43	683	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29090022	29090022	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	14	167	0	ENST00000328354.6:c.1459C>T	p.Gln487Ter	p.Q487*	ENST00000328354	NM_007194.3	487	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255721	16255721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	62	565	1	ENST00000375759.3:c.2986G>A	p.Glu996Lys	p.E996K	ENST00000375759	NM_015001.2	996	Gaa/Aaa																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733534	85733534	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	144	1166	0	ENST00000370580.1:c.478T>A	p.Ser160Thr	p.S160T	ENST00000370580	NM_003921.4	160	Tcc/Acc																																																																														
ATR	545	MSKCC	GRCh37	3	142242909	142242909	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	80	738	1	ENST00000350721.4:c.4078G>C	p.Glu1360Gln	p.E1360Q	ENST00000350721	NM_001184.3	1360	Gaa/Caa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295193	1295193	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	40	384	0				ENST00000310581	NM_198253.2																																																																																
MDC1	9656	MSKCC	GRCh37	6	30675515	30675515	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	126	874	0	ENST00000376406.3:c.2841G>C	p.Gln947His	p.Q947H	ENST00000376406	NM_014641.2	947	caG/caC																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675551	30675551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	152	1100	0	ENST00000376406.3:c.2805G>C	p.Glu935Asp	p.E935D	ENST00000376406	NM_014641.2	935	gaG/gaC																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075194	16075194	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	114	586	0	ENST00000268712.3:c.358C>T	p.Gln120Ter	p.Q120*	ENST00000268712	NM_006311.3	120	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29586058	29586058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	99	452	0	ENST00000358273.4:c.4341G>C	p.Gln1447His	p.Q1447H	ENST00000358273	NM_001042492.2	1447	caG/caC																																																																														
MALT1	10892	MSKCC	GRCh37	18	56409177	56409177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	52	1015	3	ENST00000348428.3:c.1684G>A	p.Asp562Asn	p.D562N	ENST00000348428	NM_006785.3	562	Gat/Aat																																																																														
AXL	558	MSKCC	GRCh37	19	41743882	41743882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	52	876	0	ENST00000301178.4:c.817G>C	p.Ala273Pro	p.A273P	ENST00000301178	NM_021913.4	273	Gcg/Ccg																																																																														
EP300	2033	MSKCC	GRCh37	22	41551100	41551100	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	110	781	1	ENST00000263253.7:c.3244C>T	p.Gln1082Ter	p.Q1082*	ENST00000263253	NM_001429.3	1082	Cag/Tag																																																																														
EP300	2033	MSKCC	GRCh37	22	41574304	41574304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	151	902	4	ENST00000263253.7:c.6589G>A	p.Ala2197Thr	p.A2197T	ENST00000263253	NM_001429.3	2197	Gca/Aca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089465	27089468	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGGC	TGGC	-			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	88	538	0	ENST00000324856.7:c.2422_2425del	p.Gly808ThrfsTer24	p.G808Tfs*24	ENST00000324856	NM_006015.4	807	ggTGGC/gg																																																																														
CASP8	841	MSKCC	GRCh37	2	202137403	202137413	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGGAGAAGG	CTGGGAGAAGG	-			P-0006233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	86	533	0	ENST00000358485.4:c.631_641del	p.Leu211LysfsTer24	p.L211Kfs*24	ENST00000358485	NM_001080125.1	211	CTGGGAGAAGGa/a																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	246	524	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	192	408	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0006312-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			361	244	212	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006312-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			413	253	258	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913288	32913288	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs149759218		P-0006312-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			893	441	597	0	ENST00000380152.3:c.4796A>G	p.Asn1599Ser	p.N1599S	ENST00000380152		1599	aAt/aGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554837	187554837	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006312-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			777	122	266	0	ENST00000441802.2:c.4323+1G>A		p.X1441_splice	ENST00000441802	NM_005245.3	1441																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11118599	11118599	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006312-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			506	96	244	1	ENST00000344626.4:c.2023C>T	p.Gln675Ter	p.Q675*	ENST00000344626	NM_003072.3	675	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971694	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTA	GCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTA	-			P-0006312-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			77	86	51	0	ENST00000304494.5:c.151-487_203del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971694	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTA	GCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTA	-			P-0006312-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			77	86	51	0	ENST00000304494.5:c.151-487_203del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971694	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTA	GCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTA	-			P-0006312-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			77	86	51	0	ENST00000304494.5:c.151-487_203del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
TET1	80312	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	355	513	2	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	302	325	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1235	373	356	0	ENST00000263388.2:c.125delC	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126730	5126730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	276	406	0	ENST00000381652.3:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000381652	NM_004972.3	1113	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434352	49434352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1302	382	411	0	ENST00000301067.7:c.7201C>T	p.Arg2401Cys	p.R2401C	ENST00000301067	NM_003482.3	2401	Cgc/Tgc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375045	31375045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	309	302	0	ENST00000328111.2:c.442C>T	p.Arg148Trp	p.R148W	ENST00000328111	NM_006892.3	148	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	357	325	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	426	416	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44911017	44911017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	422	263	0	ENST00000377967.4:c.718C>T	p.Gln240Ter	p.Q240*	ENST00000377967	NM_021140.2	240	Caa/Taa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225365174	225365174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	298	345	1	ENST00000264414.4:c.1516C>T	p.Arg506Trp	p.R506W	ENST00000264414	NM_003590.4	506	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262742	16262742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	147	153	1	ENST00000375759.3:c.10007G>A	p.Arg3336Gln	p.R3336Q	ENST00000375759	NM_015001.2	3336	cGg/cAg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844744	156844744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1226	997	586	0	ENST00000524377.1:c.1298C>A	p.Ser433Tyr	p.S433Y	ENST00000524377	NM_002529.3	433	tCt/tAt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703506	47703506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	257	431	0	ENST00000233146.2:c.2006G>A	p.Gly669Asp	p.G669D	ENST00000233146	NM_000251.2	669	gGc/gAc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248666	212248666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	197	456	0	ENST00000342788.4:c.3601G>A	p.Glu1201Lys	p.E1201K	ENST00000342788	NM_005235.2	1201	Gag/Aag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225362541	225362541	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	271	362	0	ENST00000264414.4:c.1636C>T	p.Arg546Ter	p.R546*	ENST00000264414	NM_003590.4	546	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937446	178937446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	194	227	0	ENST00000263967.3:c.1834C>T	p.Arg612Ter	p.R612*	ENST00000263967	NM_006218.2	612	Cga/Tga																																																																														
BCL6	604	MSKCC	GRCh37	3	187447244	187447244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1451	314	321	1	ENST00000232014.4:c.949G>A	p.Glu317Lys	p.E317K	ENST00000232014	NM_001130845.1	317	Gag/Aag																																																																														
TP63	8626	MSKCC	GRCh37	3	189586436	189586436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	208	340	0	ENST00000264731.3:c.1060G>T	p.Ala354Ser	p.A354S	ENST00000264731	NM_003722.4	354	Gcg/Tcg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139725	55139725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	312	378	0	ENST00000257290.5:c.1386G>T	p.Trp462Cys	p.W462C	ENST00000257290	NM_006206.4	462	tgG/tgT																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155196	55155196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	331	398	0	ENST00000257290.5:c.2795G>A	p.Cys932Tyr	p.C932Y	ENST00000257290	NM_006206.4	932	tGc/tAc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143043366	143043366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199940140		P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	202	327	2	ENST00000262992.4:c.2050G>A	p.Val684Ile	p.V684I	ENST00000262992	NM_001101669.1	684	Gtt/Att																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143067150	143067150	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	184	267	0	ENST00000262992.4:c.1564-1G>C		p.X522_splice	ENST00000262992	NM_001101669.1	522																																																																															
FAT1	2195	MSKCC	GRCh37	4	187540125	187540125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	287	435	0	ENST00000441802.2:c.7615A>G	p.Arg2539Gly	p.R2539G	ENST00000441802	NM_005245.3	2539	Aga/Gga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295220	1295220	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	262	177	0				ENST00000310581	NM_198253.2																																																																																
ROS1	6098	MSKCC	GRCh37	6	117642456	117642456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	283	448	0	ENST00000368508.3:c.5743G>A	p.Gly1915Arg	p.G1915R	ENST00000368508	NM_002944.2	1915	Gga/Aga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528886	157528886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	326	405	0	ENST00000346085.5:c.6611C>T	p.Ala2204Val	p.A2204V	ENST00000346085	NM_020732.3	2204	gCc/gTc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6038867	6038867	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1275	344	409	0	ENST00000265849.7:c.577A>G	p.Ile193Val	p.I193V	ENST00000265849	NM_000535.5	193	Atc/Gtc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55224321	55224321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1253	370	376	1	ENST00000275493.2:c.1102G>T	p.Asp368Tyr	p.D368Y	ENST00000275493	NM_005228.3	368	Gat/Tat																																																																														
MET	4233	MSKCC	GRCh37	7	116412020	116412020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	211	332	0	ENST00000397752.3:c.3005A>G	p.Asp1002Gly	p.D1002G	ENST00000397752	NM_000245.2	1002	gAc/gGc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98240375	98240375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	139	366	0	ENST00000331920.6:c.1309G>A	p.Val437Ile	p.V437I	ENST00000331920	NM_000264.3	437	Gtc/Atc																																																																														
ABL1	25	MSKCC	GRCh37	9	133759955	133759955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	449	542	0	ENST00000318560.5:c.2278C>T	p.Pro760Ser	p.P760S	ENST00000318560	NM_005157.4	760	Ccg/Tcg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401074	139401074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	319	405	1	ENST00000277541.6:c.3919G>A	p.Val1307Ile	p.V1307I	ENST00000277541	NM_017617.3	1307	Gtc/Atc																																																																														
RET	5979	MSKCC	GRCh37	10	43617418	43617418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1584	202	456	0	ENST00000355710.3:c.2755G>T	p.Ala919Ser	p.A919S	ENST00000355710	NM_020975.4	919	Gca/Tca																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202585	67202585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	329	353	1	ENST00000312629.5:c.1394G>A	p.Arg465His	p.R465H	ENST00000312629	NM_003952.2	465	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425793	49425793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	296	321	0	ENST00000301067.7:c.12695A>G	p.Gln4232Arg	p.Q4232R	ENST00000301067	NM_003482.3	4232	cAg/cGg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813361	102813361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	411	425	0	ENST00000307046.8:c.328G>A	p.Ala110Thr	p.A110T	ENST00000307046	NM_001111285.1	110	Gca/Aca																																																																														
TSC2	7249	MSKCC	GRCh37	16	2114301	2114301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	381	429	0	ENST00000219476.3:c.1472C>T	p.Ser491Leu	p.S491L	ENST00000219476	NM_000548.3	491	tCg/tTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779158	3779158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	243	259	1	ENST00000262367.5:c.5890C>T	p.Arg1964Cys	p.R1964C	ENST00000262367	NM_004380.2	1964	Cgt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892162	9892162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	230	465	2	ENST00000330684.3:c.2328C>A	p.Asp776Glu	p.D776E	ENST00000330684	NM_001134407.1	776	gaC/gaA																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646702	23646702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	295	408	0	ENST00000261584.4:c.1165C>T	p.Leu389Phe	p.L389F	ENST00000261584	NM_024675.3	389	Ctt/Ttt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830751	72830751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1470	558	554	0	ENST00000268489.5:c.5830G>A	p.Ala1944Thr	p.A1944T	ENST00000268489	NM_006885.3	1944	Gcc/Acc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110536	4110536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	351	369	0	ENST00000262948.5:c.421G>A	p.Gly141Arg	p.G141R	ENST00000262948	NM_030662.3	141	Ggg/Agg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231350	5231350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	317	311	0	ENST00000357368.4:c.2126C>T	p.Ser709Leu	p.S709L	ENST00000357368	NM_002850.3	709	tCg/tTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602692	10602692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1693	415	387	0	ENST00000171111.5:c.886C>T	p.Arg296Cys	p.R296C	ENST00000171111	NM_203500.1	296	Cgc/Tgc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602748	10602748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	770	399	0	ENST00000171111.5:c.830C>T	p.Thr277Met	p.T277M	ENST00000171111	NM_203500.1	277	aCg/aTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15311597	15311597	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	118	120	0	ENST00000263388.2:c.118+2T>C		p.X40_splice	ENST00000263388	NM_000435.2	40																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18279287	18279287	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	338	350	0	ENST00000222254.8:c.1739G>T	p.Trp580Leu	p.W580L	ENST00000222254	NM_005027.3	580	tGg/tTg																																																																														
AXL	558	MSKCC	GRCh37	19	41727073	41727073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2794	451	509	1	ENST00000301178.4:c.331G>A	p.Asp111Asn	p.D111N	ENST00000301178	NM_021913.4	111	Gac/Aac																																																																														
CD79A	973	MSKCC	GRCh37	19	42383113	42383113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2896	380	556	0	ENST00000221972.3:c.133A>G	p.Ser45Gly	p.S45G	ENST00000221972	NM_021601.3	45	Agc/Ggc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022656	31022656	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1338	372	478	0	ENST00000375687.4:c.2141C>A	p.Ser714Tyr	p.S714Y	ENST00000375687	NM_015338.5	714	tCc/tAc																																																																														
SRC	6714	MSKCC	GRCh37	20	36031750	36031750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1155	365	410	0	ENST00000358208.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000358208		527	Gag/Aag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916463	39916463	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	211	262	1	ENST00000378444.4:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000378444	NM_001123385.1	1514	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410336	63410336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	241	268	1	ENST00000330258.3:c.2831G>T	p.Ser944Ile	p.S944I	ENST00000330258	NM_152424.3	944	aGt/aTt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410585	63410585	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	484	285	0	ENST00000330258.3:c.2582G>C	p.Gly861Ala	p.G861A	ENST00000330258	NM_152424.3	861	gGc/gCc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411699	63411699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	403	240	0	ENST00000330258.3:c.1468G>C	p.Val490Leu	p.V490L	ENST00000330258	NM_152424.3	490	Gtc/Ctc																																																																														
AR	367	MSKCC	GRCh37	X	66766312	66766314	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	160	115	0	ENST00000374690.3:c.1328_1330del	p.Glu443del	p.E443del	ENST00000374690	NM_000044.3	442	GAA/-																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	299	442	13	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564408	86564408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	338	377	0	ENST00000274376.6:c.144del	p.Tyr49IlefsTer24	p.Y49Ifs*24	ENST00000274376	NM_002890.2	47	gCc/gc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541344	187541345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	202	399	0	ENST00000441802.2:c.6395dup	p.Leu2132PhefsTer3	p.L2132Ffs*3	ENST00000441802	NM_005245.3	2132	ttg/ttTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584580	187584581	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1307	340	456	0	ENST00000441802.2:c.3452dup	p.Asn1151LysfsTer4	p.N1151Kfs*4	ENST00000441802	NM_005245.3	1151	aat/aaAt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430251	181430251	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1462	91	254	0	ENST00000325404.1:c.107del	p.Asn36ThrfsTer10	p.N36Tfs*10	ENST00000325404	NM_003106.3	35	Aaa/aa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204706	128204706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2446	221	565	0	ENST00000341105.2:c.735del	p.Ile246SerfsTer80	p.I246Sfs*80	ENST00000341105	NM_032638.4	245	ccC/cc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47707974	47707975	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0006368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1300	306	438	2	ENST00000233146.2:c.2598_2599delinsTT	p.Met866_Glu867delinsIleTer	p.M866_E867delinsI*	ENST00000233146	NM_000251.2	866	atGGaa/atTTaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	179	564	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	216	556	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367321	50367321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	218	512	1	ENST00000331340.3:c.128G>A	p.Gly43Glu	p.G43E	ENST00000331340	NM_006060.4	43	gGa/gAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459558	50459558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	188	456	0	ENST00000331340.3:c.847C>T	p.Leu283Phe	p.L283F	ENST00000331340	NM_006060.4	283	Ctt/Ttt																																																																														
NF1	4763	MSKCC	GRCh37	17	29509639	29509639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	169	790	2	ENST00000358273.4:c.844C>T	p.Gln282Ter	p.Q282*	ENST00000358273	NM_001042492.2	282	Cag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679714	30679714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1339	348	820	0	ENST00000376406.3:c.2005C>T	p.Pro669Ser	p.P669S	ENST00000376406	NM_014641.2	669	Ccc/Tcc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317422	1317422	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	258	762	0				ENST00000381566																																																																																	
ALK	238	MSKCC	GRCh37	2	29473981	29473981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	299	664	2	ENST00000389048.3:c.2194G>A	p.Asp732Asn	p.D732N	ENST00000389048	NM_004304.4	732	Gac/Aac																																																																														
HRAS	3265	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	231	651	0	ENST00000311189.7:c.38G>A	p.Gly13Asp	p.G13D	ENST00000311189		13	gGt/gAt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937219	36937219	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140159756		P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	388	1146	3	ENST00000361632.4:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000361632		367	cGg/cAg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274554	198274554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	324	767	1	ENST00000335508.6:c.844G>A	p.Gly282Arg	p.G282R	ENST00000335508	NM_012433.2	282	Gga/Aga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165695	47165695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	296	785	0	ENST00000409792.3:c.431T>C	p.Phe144Ser	p.F144S	ENST00000409792	NM_014159.6	144	tTt/tCt																																																																														
MST1	4485	MSKCC	GRCh37	3	49723339	49723339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	85	271	1	ENST00000449682.2:c.1204G>A	p.Gly402Ser	p.G402S	ENST00000449682	NM_020998.3	402	Ggt/Agt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133740	55133740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	238	850	0	ENST00000257290.5:c.953A>G	p.Lys318Arg	p.K318R	ENST00000257290	NM_006206.4	318	aAa/aGa																																																																														
TET2	54790	MSKCC	GRCh37	4	106193899	106193899	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	185	750	0	ENST00000380013.4:c.4361T>G	p.Val1454Gly	p.V1454G	ENST00000380013	NM_001127208.2	1454	gTc/gGc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517828	187517828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	244	690	1	ENST00000441802.2:c.12866C>T	p.Pro4289Leu	p.P4289L	ENST00000441802	NM_005245.3	4289	cCc/cTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629322	187629322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	300	809	1	ENST00000441802.2:c.1660C>T	p.Leu554Phe	p.L554F	ENST00000441802	NM_005245.3	554	Ctt/Ttt																																																																														
TERT	7015	MSKCC	GRCh37	5	1294061	1294061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1577	277	834	3	ENST00000310581.5:c.940C>T	p.Pro314Ser	p.P314S	ENST00000310581	NM_198253.2	314	Cca/Tca																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671591	30671591	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1325	322	952	0	ENST00000376406.3:c.5369A>T	p.Lys1790Met	p.K1790M	ENST00000376406	NM_014641.2	1790	aAg/aTg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166330	32166330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1313	305	789	0	ENST00000375023.3:c.4624G>A	p.Glu1542Lys	p.E1542K	ENST00000375023	NM_004557.3	1542	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959064	2959064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	230	684	0	ENST00000396946.4:c.2452C>T	p.Arg818Trp	p.R818W	ENST00000396946	NM_032415.4	818	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151849988	151849988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	250	704	0	ENST00000262189.6:c.12328C>T	p.Pro4110Ser	p.P4110S	ENST00000262189	NM_170606.2	4110	Cct/Tct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152007097	152007097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	275	718	0	ENST00000262189.6:c.803C>T	p.Pro268Leu	p.P268L	ENST00000262189	NM_170606.2	268	cCa/cTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404342	139404342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	312	904	2	ENST00000277541.6:c.2812C>T	p.Arg938Trp	p.R938W	ENST00000277541	NM_017617.3	938	Cgg/Tgg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416803	121416803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	367	1081	0	ENST00000257555.6:c.232G>A	p.Gly78Arg	p.G78R	ENST00000257555		78	Ggg/Agg																																																																														
POLE	5426	MSKCC	GRCh37	12	133245005	133245005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	291	768	2	ENST00000320574.5:c.2110G>A	p.Ala704Thr	p.A704T	ENST00000320574	NM_006231.2	704	Gct/Act																																																																														
FLT3	2322	MSKCC	GRCh37	13	28610104	28610104	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	227	901	1	ENST00000241453.7:c.1386G>A	p.Trp462Ter	p.W462*	ENST00000241453	NM_004119.2	462	tgG/tgA																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001422	29001422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	94	563	3	ENST00000282397.4:c.1310C>T	p.Ser437Leu	p.S437L	ENST00000282397	NM_002019.4	437	tCg/tTg																																																																														
RB1	5925	MSKCC	GRCh37	13	49039185	49039185	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	177	698	0	ENST00000267163.4:c.2263T>A	p.Phe755Ile	p.F755I	ENST00000267163	NM_000321.2	755	Ttc/Atc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81558899	81558899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	145	657	1	ENST00000298171.2:c.492G>A	p.Met164Ile	p.M164I	ENST00000298171	NM_000369.2	164	atG/atA																																																																														
CDH1	999	MSKCC	GRCh37	16	68849430	68849430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	233	673	1	ENST00000261769.5:c.1333G>A	p.Glu445Lys	p.E445K	ENST00000261769	NM_004360.3	445	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942171	81942171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	393	992	1	ENST00000359376.3:c.1708C>T	p.Pro570Ser	p.P570S	ENST00000359376	NM_002661.3	570	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	236	788	1	ENST00000269305.4:c.994-2A>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78866579	78866579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	204	598	0	ENST00000306801.3:c.2152C>T	p.Arg718Cys	p.R718C	ENST00000306801	NM_020761.2	718	Cgt/Tgt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246822	10246822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	202	673	0	ENST00000340748.4:c.4583C>T	p.Thr1528Ile	p.T1528I	ENST00000340748		1528	aCc/aTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353866	15353866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	81	534	0	ENST00000263377.2:c.3014C>T	p.Ser1005Phe	p.S1005F	ENST00000263377	NM_058243.2	1005	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713347	40713347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	204	648	0	ENST00000373198.4:c.4168G>A	p.Glu1390Lys	p.E1390K	ENST00000373198	NM_133170.3	1390	Gag/Aag																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156695	20156695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	313	384	1	ENST00000379607.5:c.62C>T	p.Ser21Phe	p.S21F	ENST00000379607	NM_001412.3	21	tCt/tTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932638	39932638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	412	566	0	ENST00000378444.4:c.1961C>T	p.Pro654Leu	p.P654L	ENST00000378444	NM_001123385.1	654	cCc/cTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70344134	70344134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	350	463	0	ENST00000374080.3:c.1870C>T	p.Leu624Phe	p.L624F	ENST00000374080		624	Ctt/Ttt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405712	139405737	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACACGTGGCACCTGCGGGAAGGAGA	CACACGTGGCACCTGCGGGAAGGAGA	-			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	196	603	0	ENST00000277541.6:c.2468-14_2479del		p.X823_splice	ENST00000277541	NM_017617.3	823																																																																															
RB1	5925	MSKCC	GRCh37	13	48955494	48955555	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACATCGAATC	AAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACATCGAATC	-			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	60	825	0	ENST00000267163.4:c.1611_1672del	p.Lys537AsnfsTer14	p.K537Nfs*14	ENST00000267163	NM_000321.2	537	aAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACATCGAATC/a																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8501047	8501048	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	105	424	0	ENST00000356435.5:c.1834_1835delinsTT	p.Pro612Phe	p.P612F	ENST00000356435		612	CCt/TTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	175	438	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	73	228	0				ENST00000310581	NM_198253.2																																																																																
SPEN	23013	MSKCC	GRCh37	1	16247377	16247377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	140	395	1	ENST00000375759.3:c.1648C>T	p.Arg550Cys	p.R550C	ENST00000375759	NM_015001.2	550	Cgc/Tgc																																																																														
STK40	83931	MSKCC	GRCh37	1	36826837	36826837	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	241	798	0	ENST00000373129.3:c.97G>T	p.Gly33Ter	p.G33*	ENST00000373129	NM_032017.1	33	Gga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459307	120459307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	69	190	0	ENST00000256646.2:c.6038C>T	p.Pro2013Leu	p.P2013L	ENST00000256646	NM_024408.3	2013	cCt/cTt																																																																														
HIST2H3D	653604	MSKCC	GRCh37	1	149784830	149784830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	147	644	0	ENST00000331491.1:c.407C>T	p.Ala136Val	p.A136V	ENST00000331491	NM_001123375.2	136	gCc/gTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085635	16085635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	105	597	0	ENST00000281043.3:c.811G>A	p.Glu271Lys	p.E271K	ENST00000281043	NM_005378.4	271	Gaa/Aaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125767	47125767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	68	416	0	ENST00000409792.3:c.5503C>T	p.Pro1835Ser	p.P1835S	ENST00000409792	NM_014159.6	1835	Cct/Tct																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668786	52668786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	102	563	0	ENST00000394830.3:c.1133C>T	p.Ser378Phe	p.S378F	ENST00000394830	NM_018313.4	378	tCc/tTc																																																																														
ATR	545	MSKCC	GRCh37	3	142241581	142241581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	113	534	0	ENST00000350721.4:c.4255T>C	p.Tyr1419His	p.Y1419H	ENST00000350721	NM_001184.3	1419	Tat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952025	178952025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	86	613	0	ENST00000263967.3:c.3080C>T	p.Ala1027Val	p.A1027V	ENST00000263967	NM_006218.2	1027	gCc/gTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151632	55151633	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	108	647	0	ENST00000257290.5:c.2418_2419delinsAA	p.Met806_Glu807delinsIleLys	p.M806_E807delinsIK	ENST00000257290	NM_006206.4	806	atGGag/atAAag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630459	187630459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	140	821	0	ENST00000441802.2:c.523G>T	p.Asp175Tyr	p.D175Y	ENST00000441802	NM_005245.3	175	Gat/Tat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	188	517	0				ENST00000310581	NM_198253.2																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149497196	149497196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	130	473	0	ENST00000261799.4:c.3122C>T	p.Ser1041Phe	p.S1041F	ENST00000261799	NM_002609.3	1041	tCc/tTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553236	106553236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	144	494	0	ENST00000369096.4:c.1201G>C	p.Ala401Pro	p.A401P	ENST00000369096	NM_001198.3	401	Gct/Cct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641177	117641177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1503	240	1139	1	ENST00000368508.3:c.5794G>A	p.Glu1932Lys	p.E1932K	ENST00000368508	NM_002944.2	1932	Gag/Aag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642516	117642516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	230	1010	0	ENST00000368508.3:c.5683G>A	p.Gly1895Arg	p.G1895R	ENST00000368508	NM_002944.2	1895	Ggg/Agg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004247	150004247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	118	656	0	ENST00000253339.5:c.1978C>T	p.Arg660Cys	p.R660C	ENST00000253339		660	Cgt/Tgt																																																																														
SMO	6608	MSKCC	GRCh37	7	128850250	128850250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	137	776	3	ENST00000249373.3:c.1513C>T	p.Pro505Ser	p.P505S	ENST00000249373	NM_005631.4	505	Cct/Tct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	188	488	1	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	188	488	1	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852355	63852355	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	134	638	2	ENST00000279873.7:c.3133A>T	p.Lys1045Ter	p.K1045*	ENST00000279873	NM_032199.2	1045	Aag/Tag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132833	64132833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	159	830	1	ENST00000334205.4:c.967C>T	p.Arg323Cys	p.R323C	ENST00000334205	NM_003942.2	323	Cgc/Tgc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94192621	94192621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	108	606	1	ENST00000323929.3:c.1453C>T	p.Leu485Phe	p.L485F	ENST00000323929	NM_005591.3	485	Ctt/Ttt																																																																														
SDHD	6392	MSKCC	GRCh37	11	111958656	111958656	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	52	392	0	ENST00000375549.3:c.128G>A	p.Trp43Ter	p.W43*	ENST00000375549	NM_003002.3	43	tGg/tAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344839	118344839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139989306		P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	147	740	2	ENST00000534358.1:c.2965C>T	p.Leu989Phe	p.L989F	ENST00000534358	NM_005933.3	989	Ctc/Ttc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373333	118373333	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	130	780	0	ENST00000534358.1:c.6726T>G	p.Ser2242Arg	p.S2242R	ENST00000534358	NM_005933.3	2242	agT/agG																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376479	118376479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	68	556	0	ENST00000534358.1:c.9872G>A	p.Arg3291Lys	p.R3291K	ENST00000534358	NM_005933.3	3291	aGa/aAa																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025614	1025614	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	196	616	0	ENST00000358495.3:c.761C>G	p.Thr254Arg	p.T254R	ENST00000358495	NM_134424.2	254	aCg/aGg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245843	46245843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	118	606	0	ENST00000334344.6:c.3937C>T	p.Gln1313Ter	p.Q1313*	ENST00000334344	NM_152641.2	1313	Caa/Taa																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885338	111885338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	142	617	1	ENST00000341259.2:c.1226G>A	p.Gly409Glu	p.G409E	ENST00000341259	NM_005475.2	409	gGg/gAg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112892443	112892443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	111	637	0	ENST00000351677.2:c.601C>T	p.Pro201Ser	p.P201S	ENST00000351677	NM_002834.3	201	Cct/Tct																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609785	28609785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	49	460	0	ENST00000241453.7:c.1444G>T	p.Val482Phe	p.V482F	ENST00000241453	NM_004119.2	482	Gtc/Ttc																																																																														
MGA	23269	MSKCC	GRCh37	15	42034753	42034753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	114	842	0	ENST00000219905.7:c.4595C>T	p.Pro1532Leu	p.P1532L	ENST00000219905	NM_001164273.1	1532	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	206	778	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	232	680	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215384	41215384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	140	627	1	ENST00000357654.3:c.5159C>T	p.Thr1720Ile	p.T1720I	ENST00000357654	NM_007294.3	1720	aCc/aTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2213939	2213939	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	159	591	0	ENST00000398665.3:c.1751A>C	p.Gln584Pro	p.Q584P	ENST00000398665	NM_032482.2	584	cAg/cCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300201	15300201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	192	892	0	ENST00000263388.2:c.1075C>T	p.Pro359Ser	p.P359S	ENST00000263388	NM_000435.2	359	Ccc/Tcc																																																																														
AKT2	208	MSKCC	GRCh37	19	40741806	40741806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	142	518	0	ENST00000392038.2:c.1166C>T	p.Pro389Leu	p.P389L	ENST00000392038	NM_001626.4	389	cCc/cTc																																																																														
AXL	558	MSKCC	GRCh37	19	41749535	41749535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	154	769	0	ENST00000301178.4:c.1460C>T	p.Pro487Leu	p.P487L	ENST00000301178	NM_021913.4	487	cCa/cTa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023394	31023395	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	66	471	1	ENST00000375687.4:c.2879_2880delinsAA	p.Trp960Ter	p.W960*	ENST00000375687	NM_015338.5	960	tGG/tAA																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484610	57484610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	73	404	0	ENST00000371085.3:c.694C>T	p.Arg232Cys	p.R232C	ENST00000371085	NM_000516.4	232	Cgc/Tgc																																																																														
NF2	4771	MSKCC	GRCh37	22	30032742	30032742	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	45	531	0	ENST00000338641.4:c.117G>A	p.Met39Ile	p.M39I	ENST00000338641	NM_000268.3	39	atG/atA																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317580	1317580	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0006571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	66	360	0				ENST00000381566																																																																																	
SPEN	23013	MSKCC	GRCh37	1	16260569	16260569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	489	417	0	ENST00000375759.3:c.7834C>T	p.Pro2612Ser	p.P2612S	ENST00000375759	NM_015001.2	2612	Cca/Tca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099897	27099897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	207	429	1	ENST00000324856.7:c.3776C>T	p.Pro1259Leu	p.P1259L	ENST00000324856	NM_006015.4	1259	cCc/cTc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	789	402	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746023	162746023	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	301	459	0	ENST00000367921.3:c.2146T>G	p.Cys716Gly	p.C716G	ENST00000367921	NM_006182.2	716	Tgt/Ggt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652458	206652458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	196	296	0	ENST00000367120.3:c.1165G>A	p.Gly389Arg	p.G389R	ENST00000367120	NM_014002.3	389	Ggg/Agg																																																																														
ALK	238	MSKCC	GRCh37	2	30142996	30142996	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	265	441	1	ENST00000389048.3:c.530G>A	p.Trp177Ter	p.W177*	ENST00000389048	NM_004304.4	177	tGg/tAg																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47606908	47606908	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	251	342	0	ENST00000263735.4:c.658G>A	p.Val220Ile	p.V220I	ENST00000263735	NM_002354.2	220	Gtt/Att																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026182	48026182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	256	457	0	ENST00000234420.5:c.1060G>A	p.Gly354Arg	p.G354R	ENST00000234420	NM_000179.2	354	Gga/Aga																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182556	99182556	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	325	380	0	ENST00000074304.5:c.2359C>T	p.Gln787Ter	p.Q787*	ENST00000074304	NM_001134224.1	787	Cag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543810	212543810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	192	347	0	ENST00000342788.4:c.1589G>T	p.Arg530Met	p.R530M	ENST00000342788	NM_005235.2	530	aGg/aTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570064	212570064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	229	403	0	ENST00000342788.4:c.1177C>T	p.Arg393Trp	p.R393W	ENST00000342788	NM_005235.2	393	Cgg/Tgg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30686341	30686341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	186	351	0	ENST00000359013.4:c.272C>T	p.Ser91Phe	p.S91F	ENST00000359013	NM_001024847.2	91	tCc/tTc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713823	30713823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	371	377	0	ENST00000359013.4:c.1223C>T	p.Ser408Phe	p.S408F	ENST00000359013	NM_001024847.2	408	tCc/tTc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37038192	37038193	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	462	442	0	ENST00000231790.2:c.199_200delinsAA	p.Gly67Lys	p.G67K	ENST00000231790	NM_000249.3	67	GGg/AAg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439835	52439835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	241	455	0	ENST00000460680.1:c.877C>T	p.Pro293Ser	p.P293S	ENST00000460680	NM_004656.3	293	Ccg/Tcg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643834	52643834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	215	368	2	ENST00000394830.3:c.2062C>T	p.Pro688Ser	p.P688S	ENST00000394830	NM_018313.4	688	Ccc/Tcc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259557	89259557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	152	317	0	ENST00000336596.2:c.701C>T	p.Ser234Phe	p.S234F	ENST00000336596	NM_005233.5	234	tCt/tTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898705	134898705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	387	408	2	ENST00000398015.3:c.1763C>T	p.Ser588Phe	p.S588F	ENST00000398015	NM_004441.4	588	tCc/tTc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185161405	185161405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	234	497	0	ENST00000265026.3:c.832C>T	p.Arg278Cys	p.R278C	ENST00000265026	NM_004721.4	278	Cgt/Tgt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143324207	143324208	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	517	247	0	ENST00000262992.4:c.256-1_256delinsAA		p.X86_splice	ENST00000262992	NM_001101669.1	86																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	179	232	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35860953	35860953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs200803157		P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	156	322	1	ENST00000303115.3:c.83-1G>A		p.X28_splice	ENST00000303115	NM_002185.3	28																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874635	35874635	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	438	479	1	ENST00000303115.3:c.791G>A	p.Trp264Ter	p.W264*	ENST00000303115	NM_002185.3	264	tGg/tAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950105	38950105	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	184	407	1	ENST00000357387.3:c.3845C>A	p.Ser1282Ter	p.S1282*	ENST00000357387	NM_152756.3	1282	tCa/tAa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460362	149460362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	177	420	0	ENST00000286301.3:c.275G>A	p.Gly92Glu	p.G92E	ENST00000286301	NM_005211.3	92	gGa/gAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030251	180030251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	152	448	1	ENST00000261937.6:c.4033G>A	p.Glu1345Lys	p.E1345K	ENST00000261937	NM_182925.4	1345	Gag/Aag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169935	32169935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142477287		P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	811	469	0	ENST00000375023.3:c.3673C>T	p.Arg1225Trp	p.R1225W	ENST00000375023	NM_004557.3	1225	Cgg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185817	32185817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	224	463	0	ENST00000375023.3:c.1579G>A	p.Asp527Asn	p.D527N	ENST00000375023	NM_004557.3	527	Gat/Aat																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965756	93965756	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	221	535	0	ENST00000369303.4:c.2173-1G>A		p.X725_splice	ENST00000369303	NM_004440.3	725																																																																															
ROS1	6098	MSKCC	GRCh37	6	117630035	117630035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	249	462	0	ENST00000368508.3:c.6491C>T	p.Ala2164Val	p.A2164V	ENST00000368508	NM_002944.2	2164	gCt/gTt																																																																														
PARK2	5071	MSKCC	GRCh37	6	161781195	161781195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	183	515	0	ENST00000366898.1:c.1210G>A	p.Glu404Lys	p.E404K	ENST00000366898	NM_004562.2	404	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2972204	2972204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	392	353	0	ENST00000396946.4:c.1535C>T	p.Ser512Phe	p.S512F	ENST00000396946	NM_032415.4	512	tCc/tTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81388017	81388017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	439	436	0	ENST00000222390.5:c.358G>A	p.Glu120Lys	p.E120K	ENST00000222390	NM_000601.4	120	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508025	106508025	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	342	370	0	ENST00000359195.3:c.19A>G	p.Lys7Glu	p.K7E	ENST00000359195	NM_002649.2	7	Aaa/Gaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508721	106508721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	493	378	0	ENST00000359195.3:c.715G>A	p.Asp239Asn	p.D239N	ENST00000359195	NM_002649.2	239	Gac/Aac																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370927	55370927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	308	367	0	ENST00000297316.4:c.229G>A	p.Val77Met	p.V77M	ENST00000297316	NM_022454.3	77	Gtg/Atg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126751	5126751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	207	449	0	ENST00000381652.3:c.3359C>T	p.Ala1120Val	p.A1120V	ENST00000381652	NM_004972.3	1120	gCt/gTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376681	8376681	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	162	410	0	ENST00000356435.5:c.4432G>T	p.Gly1478Ter	p.G1478*	ENST00000356435		1478	Gga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518183	8518184	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	128	344	0	ENST00000356435.5:c.1207_1208delinsTT	p.Pro403Phe	p.P403F	ENST00000356435		403	CCt/TTt																																																																														
SYK	6850	MSKCC	GRCh37	9	93636974	93636974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	187	333	1	ENST00000375746.1:c.1024C>T	p.Pro342Ser	p.P342S	ENST00000375746	NM_001174167.1	342	Ccc/Tcc																																																																														
RET	5979	MSKCC	GRCh37	10	43601881	43601881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	284	435	1	ENST00000355710.3:c.925G>A	p.Glu309Lys	p.E309K	ENST00000355710	NM_020975.4	309	Gag/Aag																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845508	63845508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	433	404	0	ENST00000279873.7:c.1247C>T	p.Pro416Leu	p.P416L	ENST00000279873	NM_032199.2	416	cCc/cTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244981	123244981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	406	511	1	ENST00000358487.5:c.2123C>T	p.Pro708Leu	p.P708L	ENST00000358487	NM_000141.4	708	cCc/cTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123298174	123298174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	199	493	0	ENST00000358487.5:c.680G>A	p.Gly227Glu	p.G227E	ENST00000358487	NM_000141.4	227	gGa/gAa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573229	64573229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	181	470	3	ENST00000337652.1:c.1078C>T	p.Arg360Trp	p.R360W	ENST00000337652	NM_130803.2	360	Cgg/Tgg																																																																														
PGR	5241	MSKCC	GRCh37	11	100999411	100999411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	381	549	0	ENST00000325455.5:c.391C>T	p.Pro131Ser	p.P131S	ENST00000325455	NM_001202474.3	131	Cct/Tct																																																																														
BIRC3	330	MSKCC	GRCh37	11	102206738	102206738	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	655	634	0	ENST00000263464.3:c.1366C>T	p.Gln456Ter	p.Q456*	ENST00000263464	NM_001165.4	456	Caa/Taa																																																																														
CBL	867	MSKCC	GRCh37	11	119169209	119169209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	293	314	0	ENST00000264033.4:c.2393C>T	p.Ser798Phe	p.S798F	ENST00000264033	NM_005188.3	798	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425268	49425268	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	398	367	0	ENST00000301067.7:c.13220T>G	p.Val4407Gly	p.V4407G	ENST00000301067	NM_003482.3	4407	gTg/gGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445935	49445935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	536	611	1	ENST00000301067.7:c.1531C>T	p.Pro511Ser	p.P511S	ENST00000301067	NM_003482.3	511	Cct/Tct																																																																														
MDM2	4193	MSKCC	GRCh37	12	69218392	69218392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	480	486	0	ENST00000462284.1:c.484C>T	p.Pro162Ser	p.P162S	ENST00000462284	NM_002392.5	162	Cca/Tca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906409	32906409	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	397	384	0	ENST00000380152.3:c.794G>A	p.Gly265Glu	p.G265E	ENST00000380152		265	gGa/gAa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467875	99467875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	34	438	0	ENST00000268035.6:c.2744C>T	p.Ser915Leu	p.S915L	ENST00000268035	NM_000875.3	915	tCg/tTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862896	9862896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	195	424	2	ENST00000330684.3:c.2407G>A	p.Glu803Lys	p.E803K	ENST00000330684	NM_001134407.1	803	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916172	9916172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	163	401	0	ENST00000330684.3:c.2117C>T	p.Thr706Ile	p.T706I	ENST00000330684	NM_001134407.1	706	aCc/aTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934811	9934811	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	259	592	0	ENST00000330684.3:c.1479G>A	p.Trp493Ter	p.W493*	ENST00000330684	NM_001134407.1	493	tgG/tgA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992916	72992916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	265	657	0	ENST00000268489.5:c.1129G>A	p.Glu377Lys	p.E377K	ENST00000268489	NM_006885.3	377	Gaa/Aaa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346129	89346129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	189	242	0	ENST00000301030.4:c.6821C>T	p.Pro2274Leu	p.P2274L	ENST00000301030	NM_001256183.1	2274	cCc/cTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346532	89346532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	144	575	0	ENST00000301030.4:c.6418G>A	p.Glu2140Lys	p.E2140K	ENST00000301030	NM_001256183.1	2140	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	403	455	1	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108545	8108545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140224531		P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	458	365	0	ENST00000585124.1:c.850C>T	p.Arg284Cys	p.R284C	ENST00000585124	NM_004217.3	284	Cgc/Tgc																																																																														
NF1	4763	MSKCC	GRCh37	17	29576045	29576045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	293	496	0	ENST00000358273.4:c.4018C>T	p.Leu1340Phe	p.L1340F	ENST00000358273	NM_001042492.2	1340	Ctt/Ttt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760691	59760691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	239	470	0	ENST00000259008.2:c.3716C>T	p.Ser1239Phe	p.S1239F	ENST00000259008	NM_032043.2	1239	tCc/tTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210737	2210737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	241	493	0	ENST00000398665.3:c.1234G>A	p.Gly412Arg	p.G412R	ENST00000398665	NM_032482.2	412	Ggg/Agg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10283839	10283839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	189	427	0	ENST00000340748.4:c.647C>T	p.Pro216Leu	p.P216L	ENST00000340748		216	cCg/cTg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18280025	18280025	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	150	224	0	ENST00000222254.8:c.2108A>G	p.Gln703Arg	p.Q703R	ENST00000222254	NM_005027.3	703	cAg/cGg																																																																														
CIC	23152	MSKCC	GRCh37	19	42798235	42798235	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	249	353	0	ENST00000575354.2:c.4189T>A	p.Ser1397Thr	p.S1397T	ENST00000575354	NM_015125.3	1397	Tcc/Acc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546683	9546683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	584	463	1	ENST00000353224.5:c.1339G>A	p.Glu447Lys	p.E447K	ENST00000353224	NM_177990.2	447	Gaa/Aaa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561450	9561450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	208	446	0	ENST00000353224.5:c.332G>A	p.Gly111Glu	p.G111E	ENST00000353224	NM_177990.2	111	gGa/gAa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561477	9561477	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	190	377	1	ENST00000353224.5:c.305A>T	p.Lys102Ile	p.K102I	ENST00000353224	NM_177990.2	102	aAa/aTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40738999	40738999	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	151	373	0	ENST00000373198.4:c.3285A>C	p.Glu1095Asp	p.E1095D	ENST00000373198	NM_133170.3	1095	gaA/gaC																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419992	41419992	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	192	503	0	ENST00000373198.4:c.329C>G	p.Ser110Cys	p.S110C	ENST00000373198	NM_133170.3	110	tCc/tGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420005	41420005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	193	503	0	ENST00000373198.4:c.316C>T	p.His106Tyr	p.H106Y	ENST00000373198	NM_133170.3	106	Cat/Tat																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484260	57484261	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	650	345	0	ENST00000371085.3:c.574_575delinsTT	p.Pro192Leu	p.P192L	ENST00000371085	NM_000516.4	192	CCg/TTg																																																																														
ERG	2078	MSKCC	GRCh37	21	39795396	39795396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	199	458	0	ENST00000288319.7:c.324G>A	p.Met108Ile	p.M108I	ENST00000288319	NM_182918.3	108	atG/atA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918292	44918292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	243	226	0	ENST00000377967.4:c.917C>T	p.Ser306Phe	p.S306F	ENST00000377967	NM_021140.2	306	tCt/tTt																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044578	128044585	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGACTT	AGGGACTT	-			P-0006621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	391	417	0	ENST00000285398.2:c.1036_1043del	p.Lys346GlyfsTer37	p.K346Gfs*37	ENST00000285398	NM_000122.1	346	AAGTCCCTg/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	213	361	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971199	21971199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	21	191	0	ENST00000304494.5:c.159G>A	p.Met53Ile	p.M53I	ENST00000304494	NM_000077.4	53	atG/atA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971199	21971199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	21	191	0	ENST00000304494.5:c.159G>A	p.Met53Ile	p.M53I	ENST00000304494	NM_000077.4	53	atG/atA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971199	21971199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	21	191	0	ENST00000304494.5:c.159G>A	p.Met53Ile	p.M53I	ENST00000304494	NM_000077.4	53	atG/atA																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	32	440	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73774771	73774771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	202	385	2	ENST00000254810.4:c.316G>A	p.Glu106Lys	p.E106K	ENST00000254810	NM_005324.3	106	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108160488	108160488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	201	482	0	ENST00000278616.4:c.4396C>T	p.Arg1466Ter	p.R1466*	ENST00000278616	NM_000051.3	1466	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41568590	41568590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	198	545	0	ENST00000263253.7:c.4540G>A	p.Glu1514Lys	p.E1514K	ENST00000263253	NM_001429.3	1514	Gaa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272398	11272398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	229	368	0	ENST00000361445.4:c.3532T>C	p.Ser1178Pro	p.S1178P	ENST00000361445	NM_004958.3	1178	Tct/Cct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16245993	16245993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	189	502	1	ENST00000375759.3:c.1616G>A	p.Arg539Gln	p.R539Q	ENST00000375759	NM_015001.2	539	cGa/cAa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36934832	36934832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	363	670	0	ENST00000361632.4:c.1501G>A	p.Glu501Lys	p.E501K	ENST00000361632		501	Gag/Aag																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113380	209113380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	141	286	0	ENST00000345146.2:c.127G>A	p.Asp43Asn	p.D43N	ENST00000345146	NM_005896.2	43	Gat/Aat																																																																														
MST1	4485	MSKCC	GRCh37	3	49721992	49721992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	11	122	0	ENST00000449682.2:c.1867G>A	p.Glu623Lys	p.E623K	ENST00000449682	NM_020998.3	623	Gag/Aag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89156901	89156901	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	218	398	0	ENST00000336596.2:c.3G>A	p.Met1?	p.M1?	ENST00000336596	NM_005233.5	1	atG/atA																																																																														
ATR	545	MSKCC	GRCh37	3	142266619	142266619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	37	520	1	ENST00000350721.4:c.3305C>T	p.Ser1102Phe	p.S1102F	ENST00000350721	NM_001184.3	1102	tCc/tTc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191307	185191307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	150	300	1	ENST00000265026.3:c.2188G>A	p.Asp730Asn	p.D730N	ENST00000265026	NM_004721.4	730	Gac/Aac																																																																														
TET2	54790	MSKCC	GRCh37	4	106193757	106193757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	124	299	0	ENST00000380013.4:c.4219G>T	p.Gly1407Ter	p.G1407*	ENST00000380013	NM_001127208.2	1407	Gga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629533	187629533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	50	426	0	ENST00000441802.2:c.1449G>A	p.Met483Ile	p.M483I	ENST00000441802	NM_005245.3	483	atG/atA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592024	67592024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	219	410	1	ENST00000274335.5:c.1840G>A	p.Glu614Lys	p.E614K	ENST00000274335		614	Gaa/Aaa																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045930	26045930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1385	386	867	0	ENST00000540144.1:c.292G>A	p.Glu98Lys	p.E98K	ENST00000540144	NM_003531.2	98	Gag/Aag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527754	157527754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	212	336	0	ENST00000346085.5:c.5479A>C	p.Thr1827Pro	p.T1827P	ENST00000346085	NM_020732.3	1827	Acc/Ccc																																																																														
HGF	3082	MSKCC	GRCh37	7	81334798	81334798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	87	420	0	ENST00000222390.5:c.1918G>A	p.Glu640Lys	p.E640K	ENST00000222390	NM_000601.4	640	Gag/Aag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5089800	5089800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	179	464	0	ENST00000381652.3:c.2698G>A	p.Glu900Lys	p.E900K	ENST00000381652	NM_004972.3	900	Gaa/Aaa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400012	139400012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	221	459	0	ENST00000277541.6:c.4336G>A	p.Glu1446Lys	p.E1446K	ENST00000277541	NM_017617.3	1446	Gag/Aag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244999	123244999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150015885		P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	185	465	1	ENST00000358487.5:c.2105C>T	p.Ser702Leu	p.S702L	ENST00000358487	NM_000141.4	702	tCg/tTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123246893	123246893	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	276	603	0	ENST00000358487.5:c.2032A>G	p.Arg678Gly	p.R678G	ENST00000358487	NM_000141.4	678	Aga/Gga																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258035	123258035	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	248	630	0	ENST00000358487.5:c.1646A>C	p.Asn549Thr	p.N549T	ENST00000358487	NM_000141.4	549	aAt/aCt																																																																														
TIMM8B	26521	MSKCC	GRCh37	11	111957432	111957432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	20	47	0	ENST00000541231.1:c.61G>A	p.Glu21Lys	p.E21K	ENST00000541231		21	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433560	49433560	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	311	549	0	ENST00000301067.7:c.7993C>T	p.Gln2665Ter	p.Q2665*	ENST00000301067	NM_003482.3	2665	Cag/Tag																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872475	35872475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	344	573	0	ENST00000216797.5:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000216797	NM_020529.2	143	cGa/cAa																																																																														
MGA	23269	MSKCC	GRCh37	15	41988466	41988466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	255	790	0	ENST00000219905.7:c.1258G>A	p.Asp420Asn	p.D420N	ENST00000219905	NM_001164273.1	420	Gat/Aat																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619165	37619165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	258	505	1	ENST00000447079.4:c.841G>A	p.Glu281Lys	p.E281K	ENST00000447079	NM_015083.1	281	Gag/Aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492817	56492817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	254	369	1	ENST00000407977.2:c.122C>T	p.Ser41Leu	p.S41L	ENST00000407977		41	tCa/tTa																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14629035	14629035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	188	405	0	ENST00000254322.2:c.127G>A	p.Glu43Lys	p.E43K	ENST00000254322	NM_006145.1	43	Gag/Aag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355117	15355117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	230	544	1	ENST00000263377.2:c.2506C>T	p.Pro836Ser	p.P836S	ENST00000263377	NM_058243.2	836	Ccc/Tcc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872374	45872374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	256	512	0	ENST00000391945.4:c.137C>G	p.Thr46Ser	p.T46S	ENST00000391945	NM_000400.3	46	aCc/aGc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933338	39933338	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	174	649	0	ENST00000378444.4:c.1261G>C	p.Gly421Arg	p.G421R	ENST00000378444	NM_001123385.1	421	Ggc/Cgc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820527	44820527	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	92	415	0	ENST00000377967.4:c.226-2A>T		p.X76_splice	ENST00000377967	NM_021140.2	76																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44937684	44937684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	99	480	0	ENST00000377967.4:c.2872C>T	p.Gln958Ter	p.Q958*	ENST00000377967	NM_021140.2	958	Caa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153259041	153259044	+	frameshift_variant	Frame_Shift_Del	DEL	ATCA	ATCA	-			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	97	434	0	ENST00000281708.4:c.771_774del	p.Asp258ValfsTer7	p.D258Vfs*7	ENST00000281708	NM_033632.3	257	atTGAT/at																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100393	8100402	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACGGCT	CACCACGGCT	-			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1050	153	626	0	ENST00000346208.3:c.368_377del	p.His123ProfsTer69	p.H123Pfs*69	ENST00000346208		123	CACCACGGCTcc/cc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253806	153253808	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	C			P-0006645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	100	413	0	ENST00000281708.4:c.925_927delinsG	p.Arg309ValfsTer7	p.R309Vfs*7	ENST00000281708	NM_033632.3	309	CGC/G																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	182	243	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	480	433	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577469	64577469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	849	379	0	ENST00000337652.1:c.113C>T	p.Ser38Phe	p.S38F	ENST00000337652	NM_130803.2	38	tCc/tTc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098815	178098815	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	495	466	0	ENST00000397062.3:c.230A>T	p.Asp77Val	p.D77V	ENST00000397062	NM_006164.4	77	gAt/gTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55987291	55987291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	314	360	0	ENST00000263923.4:c.134C>A	p.Ala45Asp	p.A45D	ENST00000263923	NM_002253.2	45	gCt/gAt																																																																														
SDHA	6389	MSKCC	GRCh37	5	236645	236645	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	333	368	0	ENST00000264932.6:c.1363A>C	p.Asn455His	p.N455H	ENST00000264932	NM_004168.2	455	Aac/Cac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342935	118342935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	895	423	0	ENST00000534358.1:c.1061G>C	p.Arg354Thr	p.R354T	ENST00000534358	NM_005933.3	354	aGg/aCg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89335037	89335037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	109	253	0	ENST00000301030.4:c.7841C>T	p.Ala2614Val	p.A2614V	ENST00000301030	NM_001256183.1	2614	gCg/gTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	193	274	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	138	249	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	34	198	0				ENST00000310581	NM_198253.2																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44923060	44923060	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0006705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	68	351	0	ENST00000377967.4:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000377967	NM_021140.2	641	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	17	509	0	ENST00000269305.4:c.848G>A	p.Arg283His	p.R283H	ENST00000269305	NM_001126112.2	283	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100928	27100928	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	60	414	0	ENST00000324856.7:c.4210C>T	p.Gln1404Ter	p.Q1404*	ENST00000324856	NM_006015.4	1404	Cag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662339	67662339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201123106		P-0006705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	63	456	0	ENST00000264010.4:c.1585G>A	p.Asp529Asn	p.D529N	ENST00000264010	NM_006565.3	529	Gat/Aat																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216753	7216753	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	101	700	0	ENST00000380728.2:c.670C>G	p.Gln224Glu	p.Q224E	ENST00000380728		224	Cag/Gag																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216947	7216947	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	77	613	0	ENST00000380728.2:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000380728		192	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578240	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AG			P-0006705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	84	524	0	ENST00000269305.4:c.609_610delinsCT	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	203	gtGGag/gtCTag																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075675	8075675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	167	586	1	ENST00000377482.5:c.5C>T	p.Ser2Leu	p.S2L	ENST00000377482	NM_018948.3	2	tCa/tTa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257733	16257734	+	missense_variant	Missense_Mutation	DNP	TT	TT	CA			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	248	500	0	ENST00000375759.3:c.4998_4999delinsCA	p.Leu1667Met	p.L1667M	ENST00000375759	NM_015001.2	1666	ccTTtg/ccCAtg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16263838	16263838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183490080		P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	499	677	0	ENST00000375759.3:c.10207C>T	p.Arg3403Cys	p.R3403C	ENST00000375759	NM_015001.2	3403	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024029	27024029	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	69	139	0	ENST00000324856.7:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000324856	NM_006015.4	379	Cag/Tag																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551844	150551844	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	148	122	0	ENST00000369026.2:c.163G>T	p.Ala55Ser	p.A55S	ENST00000369026	NM_021960.4	55	Gcg/Tcg																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226253416	226253416	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	84	95	0	ENST00000366813.1:c.188T>G	p.Ile63Ser	p.I63S	ENST00000366813		63	aTt/aGt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470597	25470597	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	335	520	0	ENST00000264709.3:c.877G>C	p.Gly293Arg	p.G293R	ENST00000264709	NM_175629.2	293	Ggg/Cgg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729940	30729940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	309	479	1	ENST00000359013.4:c.1536G>A	p.Met512Ile	p.M512I	ENST00000359013	NM_001024847.2	512	atG/atA																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940061	49940061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	546	782	2	ENST00000296474.3:c.982C>T	p.Pro328Ser	p.P328S	ENST00000296474	NM_002447.2	328	Cca/Tca																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204825	128204825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	423	719	1	ENST00000341105.2:c.616G>A	p.Glu206Lys	p.E206K	ENST00000341105	NM_032638.4	206	Gag/Aag																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664804	138664804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	43	52	0	ENST00000330315.3:c.761C>T	p.Ser254Leu	p.S254L	ENST00000330315	NM_023067.3	254	tCg/tTg																																																																														
ATR	545	MSKCC	GRCh37	3	142279171	142279171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	246	641	2	ENST00000350721.4:c.1475G>A	p.Gly492Glu	p.G492E	ENST00000350721	NM_001184.3	492	gGa/gAa																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430962	181430962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	248	584	0	ENST00000325404.1:c.814G>A	p.Asp272Asn	p.D272N	ENST00000325404	NM_003106.3	272	Gac/Aac																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138567	55138567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	54	418	0	ENST00000257290.5:c.1244C>T	p.Ser415Leu	p.S415L	ENST00000257290	NM_006206.4	415	tCa/tTa																																																																														
KIT	3815	MSKCC	GRCh37	4	55564512	55564512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	260	413	1	ENST00000288135.5:c.400G>A	p.Val134Ile	p.V134I	ENST00000288135	NM_000222.2	134	Gtc/Atc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247165	153247165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	82	468	0	ENST00000281708.4:c.1637C>T	p.Ser546Leu	p.S546L	ENST00000281708	NM_033632.3	546	tCa/tTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247328	153247328	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	161	513	0	ENST00000281708.4:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000281708	NM_033632.3	492	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524519	187524519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	186	598	0	ENST00000441802.2:c.11161G>A	p.Asp3721Asn	p.D3721N	ENST00000441802	NM_005245.3	3721	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	188	225	1				ENST00000310581	NM_198253.2																																																																																
HIST1H3D	8351	MSKCC	GRCh37	6	26197189	26197189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1444	747	1185	0	ENST00000356476.2:c.290G>A	p.Cys97Tyr	p.C97Y	ENST00000356476		97	tGc/tAc																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197472	26197472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	575	891	1	ENST00000356476.2:c.7C>T	p.Arg3Cys	p.R3C	ENST00000356476		3	Cgt/Tgt																																																																														
CCND3	896	MSKCC	GRCh37	6	41904302	41904302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	187	357	0	ENST00000372991.4:c.706G>A	p.Glu236Lys	p.E236K	ENST00000372991	NM_001760.3	236	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662438	117662438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	179	594	0	ENST00000368508.3:c.4939G>A	p.Glu1647Lys	p.E1647K	ENST00000368508	NM_002944.2	1647	Gag/Aag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709171	117709171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	150	454	0	ENST00000368508.3:c.1786G>A	p.Glu596Lys	p.E596K	ENST00000368508	NM_002944.2	596	Gaa/Aaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502191	157502191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	282	478	4	ENST00000346085.5:c.3224G>A	p.Arg1075Gln	p.R1075Q	ENST00000346085	NM_020732.3	1075	cGa/cAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2974182	2974182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	445	696	0	ENST00000396946.4:c.1423G>A	p.Asp475Asn	p.D475N	ENST00000396946	NM_032415.4	475	Gac/Aac																																																																														
RAC1	5879	MSKCC	GRCh37	7	6439797	6439797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	311	525	0	ENST00000356142.4:c.323C>T	p.Ser108Leu	p.S108L	ENST00000356142	NM_018890.3	108	tCa/tTa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730093	41730093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	528	985	0	ENST00000242208.4:c.436G>A	p.Asp146Asn	p.D146N	ENST00000242208	NM_002192.2	146	Gac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55260462	55260462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	364	624	0	ENST00000275493.2:c.2629C>G	p.Pro877Ala	p.P877A	ENST00000275493	NM_005228.3	877	Cct/Gct																																																																														
BRAF	673	MSKCC	GRCh37	7	140476832	140476832	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	86	675	0	ENST00000288602.6:c.1574T>C	p.Leu525Pro	p.L525P	ENST00000288602	NM_004333.4	525	cTg/cCg																																																																														
RHEB	6009	MSKCC	GRCh37	7	151188058	151188058	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	60	901	0	ENST00000262187.5:c.95T>C	p.Val32Ala	p.V32A	ENST00000262187	NM_005614.3	32	gTg/gCg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859555	151859555	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	92	581	0	ENST00000262189.6:c.11107G>C	p.Glu3703Gln	p.E3703Q	ENST00000262189	NM_170606.2	3703	Gaa/Caa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287247	38287247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	404	697	0	ENST00000425967.3:c.410G>A	p.Ser137Asn	p.S137N	ENST00000425967	NM_001174067.1	137	aGc/aAc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868953	117868953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	245	683	0	ENST00000297338.2:c.746C>T	p.Ser249Phe	p.S249F	ENST00000297338	NM_006265.2	249	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994138	21994138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	355	572	0	ENST00000361570.3:c.316G>A	p.Gly106Ser	p.G106S	ENST00000361570	NM_058195.3	106	Ggt/Agt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994138	21994138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	355	572	0	ENST00000361570.3:c.316G>A	p.Gly106Ser	p.G106S	ENST00000361570	NM_058195.3	106	Ggt/Agt																																																																														
FANCC	2176	MSKCC	GRCh37	9	97887418	97887418	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	289	613	0	ENST00000289081.3:c.946C>T	p.Gln316Ter	p.Q316*	ENST00000289081	NM_000136.2	316	Cag/Tag																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101909944	101909944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	154	396	0	ENST00000374994.4:c.1264G>A	p.Glu422Lys	p.E422K	ENST00000374994	NM_004612.2	422	Gaa/Aaa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136035	64136035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	170	391	0	ENST00000334205.4:c.1296G>C	p.Gln432His	p.Q432H	ENST00000334205	NM_003942.2	432	caG/caC																																																																														
EED	8726	MSKCC	GRCh37	11	85975286	85975286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	236	660	1	ENST00000263360.6:c.707G>A	p.Arg236Lys	p.R236K	ENST00000263360	NM_003797.3	236	aGa/aAa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	493286	493286	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	325	609	2	ENST00000399788.2:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000399788	NM_001042603.1	93	Caa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133215820	133215820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	381	626	0	ENST00000320574.5:c.5443G>A	p.Asp1815Asn	p.D1815N	ENST00000320574	NM_006231.2	1815	Gac/Aac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953937	32953937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	179	474	0	ENST00000380152.3:c.9004G>A	p.Glu3002Lys	p.E3002K	ENST00000380152		3002	Gaa/Aaa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240137	41240137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	65	136	0	ENST00000379561.5:c.213G>A	p.Met71Ile	p.M71I	ENST00000379561	NM_002015.3	71	atG/atA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060925	38060925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	254	315	0	ENST00000250448.2:c.1064C>T	p.Ser355Leu	p.S355L	ENST00000250448	NM_004496.3	355	tCa/tTa																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68301827	68301827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	139	609	0	ENST00000487270.1:c.229G>A	p.Asp77Asn	p.D77N	ENST00000487270	NM_133509.3	77	Gat/Aat																																																																														
AKT1	207	MSKCC	GRCh37	14	105242030	105242030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	428	675	1	ENST00000349310.3:c.394G>A	p.Glu132Lys	p.E132K	ENST00000349310	NM_001014432.1	132	Gaa/Aaa																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023126	33023126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	424	806	0	ENST00000300177.4:c.235G>A	p.Glu79Lys	p.E79K	ENST00000300177	NM_001191322.1	79	Gag/Aag																																																																														
BLM	641	MSKCC	GRCh37	15	91304419	91304419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	140	484	0	ENST00000355112.3:c.1816G>A	p.Asp606Asn	p.D606N	ENST00000355112	NM_000057.2	606	Gac/Aac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843447	3843447	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	449	561	1	ENST00000262367.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000262367	NM_004380.2	386	Cga/Tga																																																																														
PALB2	79728	MSKCC	GRCh37	16	23614877	23614877	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	90	668	0	ENST00000261584.4:c.3464C>G	p.Ser1155Cys	p.S1155C	ENST00000261584	NM_024675.3	1155	tCt/tGt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346067	89346067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	50	78	0	ENST00000301030.4:c.6883G>A	p.Glu2295Lys	p.E2295K	ENST00000301030	NM_001256183.1	2295	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346466	89346466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	129	727	3	ENST00000301030.4:c.6484C>A	p.Pro2162Thr	p.P2162T	ENST00000301030	NM_001256183.1	2162	Cct/Act																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882362	89882362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	371	522	0	ENST00000389301.3:c.112G>A	p.Glu38Lys	p.E38K	ENST00000389301	NM_000135.2	38	Gaa/Aaa																																																																														
RARA	5914	MSKCC	GRCh37	17	38512450	38512450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	300	432	1	ENST00000254066.5:c.1361G>A	p.Arg454Lys	p.R454K	ENST00000254066	NM_000964.3	454	aGa/aAa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40456623	40456623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	538	801	0	ENST00000345506.4:c.1333G>A	p.Glu445Lys	p.E445K	ENST00000345506	NM_003152.3	445	Gag/Aag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599926	10599926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	132	599	1	ENST00000171111.5:c.1650G>A	p.Met550Ile	p.M550I	ENST00000171111	NM_203500.1	550	atG/atA																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367789	15367789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	315	490	1	ENST00000263377.2:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000263377	NM_058243.2	513	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860556	45860556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	449	684	0	ENST00000391945.4:c.1451C>T	p.Thr484Met	p.T484M	ENST00000391945	NM_000400.3	484	aCg/aTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735428	40735428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1351	98	624	0	ENST00000373198.4:c.3445G>A	p.Glu1149Lys	p.E1149K	ENST00000373198	NM_133170.3	1149	Gag/Aag																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866486	42866486	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28532009		P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	566	767	0	ENST00000398585.3:c.146G>A	p.Gly49Glu	p.G49E	ENST00000398585	NM_001135099.1	49	gGa/gAa																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	337	640	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872191	45872199	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAATCTC	CTCAATCTC	GCCTT			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	291	570	0	ENST00000391945.4:c.235_243delinsAAGGC	p.Glu79LysfsTer4	p.E79Kfs*4	ENST00000391945	NM_000400.3	79	GAGATTGAG/AAGGC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100937	27100955	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCCCAGCCCCAGCCTG	CCAGCCCAGCCCCAGCCTG	-			P-0006714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	404	543	2	ENST00000324856.7:c.4225_4243del	p.Gln1409SerfsTer66	p.Q1409Sfs*66	ENST00000324856	NM_006015.4	1407	CCAGCCCAGCCCCAGCCTGcc/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	161	178	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	369	485	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	196	461	0	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29654535	29654535	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	399	459	0	ENST00000358273.4:c.5287C>T	p.Gln1763Ter	p.Q1763*	ENST00000358273	NM_001042492.2	1763	Caa/Taa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560464	95560464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	188	276	0	ENST00000343455.3:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000343455	NM_177438.2	1709	Gat/Aat																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015003	37015003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	516	332	0	ENST00000358127.4:c.401C>T	p.Ser134Phe	p.S134F	ENST00000358127	NM_001280556.1	134	tCc/tTc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933744	49933744	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	616	676	0	ENST00000296474.3:c.2533C>T	p.Arg845Ter	p.R845*	ENST00000296474	NM_002447.2	845	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142226846	142226846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	249	515	0	ENST00000350721.4:c.4958G>A	p.Arg1653Gln	p.R1653Q	ENST00000350721	NM_001184.3	1653	cGa/cAa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713742	30713742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	329	379	0	ENST00000359013.4:c.1142G>C	p.Arg381Pro	p.R381P	ENST00000359013	NM_001024847.2	381	cGg/cCg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935006	49935006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	730	747	0	ENST00000296474.3:c.1993G>A	p.Gly665Ser	p.G665S	ENST00000296474	NM_002447.2	665	Ggc/Agc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251912	153251912	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	236	560	0	ENST00000281708.4:c.1094G>A	p.Trp365Ter	p.W365*	ENST00000281708	NM_033632.3	365	tGg/tAg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707785	176707785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	217	491	0	ENST00000439151.2:c.5842C>T	p.Arg1948Cys	p.R1948C	ENST00000439151	NM_022455.4	1948	Cgc/Tgc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138198257	138198257	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	254	394	0	ENST00000237289.4:c.850G>T	p.Glu284Ter	p.E284*	ENST00000237289	NM_001270507.1	284	Gaa/Taa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467680	50467680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	415	518	1	ENST00000331340.3:c.915G>A	p.Met305Ile	p.M305I	ENST00000331340	NM_006060.4	305	atG/atA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873738	151873738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	277	391	0	ENST00000262189.6:c.8800C>T	p.Pro2934Ser	p.P2934S	ENST00000262189	NM_170606.2	2934	Cca/Tca																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275887	38275887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	422	459	0	ENST00000425967.3:c.1382C>T	p.Ser461Phe	p.S461F	ENST00000425967	NM_001174067.1	461	tCt/tTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8338945	8338945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	373	576	0	ENST00000356435.5:c.5356G>A	p.Glu1786Lys	p.E1786K	ENST00000356435		1786	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720876	89720876	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	88	222	0	ENST00000371953.3:c.1026+1G>T		p.X342_splice	ENST00000371953	NM_000314.4	342																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123298166	123298166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	398	492	0	ENST00000358487.5:c.688A>G	p.Thr230Ala	p.T230A	ENST00000358487	NM_000141.4	230	Acc/Gcc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243840	46243840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	132	321	0	ENST00000334344.6:c.1934C>T	p.Thr645Ile	p.T645I	ENST00000334344	NM_152641.2	645	aCc/aTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495421	56495421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	583	630	0	ENST00000267101.3:c.3611G>A	p.Arg1204Lys	p.R1204K	ENST00000267101	NM_001982.3	1204	aGa/aAa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95595842	95595842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	149	402	0	ENST00000343455.3:c.701C>T	p.Ala234Val	p.A234V	ENST00000343455	NM_177438.2	234	gCt/gTt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868132	56868132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	454	704	0	ENST00000308159.5:c.1630C>T	p.Pro544Ser	p.P544S	ENST00000308159	NM_014669.4	544	Cca/Tca																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655455	67655455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	240	549	0	ENST00000264010.4:c.1318C>T	p.Pro440Ser	p.P440S	ENST00000264010	NM_006565.3	440	Ccc/Tcc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993437	72993437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	539	754	0	ENST00000268489.5:c.608C>T	p.Ser203Phe	p.S203F	ENST00000268489	NM_006885.3	203	tCc/tTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929463	81929463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	508	617	1	ENST00000359376.3:c.1124C>G	p.Thr375Arg	p.T375R	ENST00000359376	NM_002661.3	375	aCg/aGg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866435	37866435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	468	459	0	ENST00000269571.5:c.740C>T	p.Pro247Leu	p.P247L	ENST00000269571		247	cCc/cTc																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73775203	73775203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	475	565	1	ENST00000254810.4:c.53G>T	p.Arg18Leu	p.R18L	ENST00000254810	NM_005324.3	18	cGc/cTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274344	5274344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	152	332	0	ENST00000357368.4:c.103T>C	p.Phe35Leu	p.F35L	ENST00000357368	NM_002850.3	35	Ttt/Ctt																																																																														
CIC	23152	MSKCC	GRCh37	19	42794781	42794781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	489	473	1	ENST00000575354.2:c.1861C>T	p.Pro621Ser	p.P621S	ENST00000575354	NM_015125.3	621	Ccc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101130	41101130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	340	407	0	ENST00000373198.4:c.1226C>T	p.Pro409Leu	p.P409L	ENST00000373198	NM_133170.3	409	cCc/cTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028803	47028803	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	309	544	0	ENST00000329236.7:c.107A>G	p.Tyr36Cys	p.Y36C	ENST00000329236	NM_001204466.1	36	tAc/tGc																																																																														
ATRX	546	MSKCC	GRCh37	X	76872111	76872111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	145	703	0	ENST00000373344.5:c.5536C>T	p.Leu1846Phe	p.L1846F	ENST00000373344	NM_000489.3	1846	Ctc/Ttc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123181291	123181291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	310	684	1	ENST00000218089.9:c.755G>A	p.Arg252Gln	p.R252Q	ENST00000218089	NM_001042749.1	252	cGg/cAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169149	32169150	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	364	446	0	ENST00000375023.3:c.3883_3884delinsTT	p.Pro1295Phe	p.P1295F	ENST00000375023	NM_004557.3	1295	CCc/TTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411383	63411384	+	missense_variant	Missense_Mutation	DNP	GC	GC	CA			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	238	510	0	ENST00000330258.3:c.1783_1784delinsTG	p.Ala595Cys	p.A595C	ENST00000330258	NM_152424.3	595	GCc/TGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028800	47028803	+	missense_variant	Missense_Mutation	ONP	ACTA	ACTA	GCTG			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1146	308	560	0	ENST00000329236.7:c.104_107delinsGCTG	p.Asp35_Tyr36delinsGlyCys	p.D35_Y36delinsGC	ENST00000329236	NM_001204466.1	35	gACTAc/gGCTGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971093	21971094	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	360	233	0	ENST00000304494.5:c.264_265delinsAA	p.Gly89Ser	p.G89S	ENST00000304494	NM_000077.4	88	gaGGgc/gaAAgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971093	21971094	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	360	233	0	ENST00000304494.5:c.264_265delinsAA	p.Gly89Ser	p.G89S	ENST00000304494	NM_000077.4	88	gaGGgc/gaAAgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971093	21971094	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	360	233	0	ENST00000304494.5:c.264_265delinsAA	p.Gly89Ser	p.G89S	ENST00000304494	NM_000077.4	88	gaGGgc/gaAAgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	154	411	1				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40730916	40730916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	93	450	1	ENST00000373198.4:c.3619C>T	p.Arg1207Cys	p.R1207C	ENST00000373198	NM_133170.3	1207	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106658	27106658	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	486	552	0	ENST00000324856.7:c.6269A>C	p.His2090Pro	p.H2090P	ENST00000324856	NM_006015.4	2090	cAc/cCc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528611	8528611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201846121		P-0006800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	105	862	2	ENST00000356435.5:c.521G>A	p.Arg174His	p.R174H	ENST00000356435		174	cGt/cAt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285754	87285754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	117	793	3	ENST00000277120.3:c.91G>A	p.Ala31Thr	p.A31T	ENST00000277120		31	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786817	3786817	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	169	498	0	ENST00000262367.5:c.4395-1G>T		p.X1465_splice	ENST00000262367	NM_004380.2	1465																																																																															
NF1	4763	MSKCC	GRCh37	17	29562982	29562982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	133	817	2	ENST00000358273.4:c.3917G>A	p.Arg1306Gln	p.R1306Q	ENST00000358273	NM_001042492.2	1306	cGa/cAa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302381	15302381	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	144	842	0	ENST00000263388.2:c.890G>C	p.Gly297Ala	p.G297A	ENST00000263388	NM_000435.2	297	gGc/gCc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877433	40877433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	82	651	1	ENST00000373198.4:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000373198	NM_133170.3	755	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	113	324	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	36	241	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0006902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	156	274	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	341	414	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0006902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	168	282	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
MAX	4149	MSKCC	GRCh37	14	65569036	65569036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	330	426	2	ENST00000358664.4:c.22G>A	p.Glu8Lys	p.E8K	ENST00000358664	NM_002382.4	8	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806555	1806555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	195	315	0	ENST00000260795.2:c.1271C>T	p.Ser424Phe	p.S424F	ENST00000260795		424	tCc/tTc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937918	36937918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	358	535	0	ENST00000361632.4:c.918G>C	p.Gln306His	p.Q306H	ENST00000361632		306	caG/caC																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678626	88678626	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	87	163	0	ENST00000360948.2:c.910C>A	p.Pro304Thr	p.P304T	ENST00000360948	NM_001012338.2	304	Ccc/Acc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197026	123197026	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	337	255	1	ENST00000218089.9:c.1792G>T	p.Glu598Ter	p.E598*	ENST00000218089	NM_001042749.1	598	Gaa/Taa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900369	3900369	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	245	445	0	ENST00000262367.5:c.727del	p.Leu243Ter	p.L243*	ENST00000262367	NM_004380.2	243	Cta/ta																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006922-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			327	283	390	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006922-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			57	59	271	1				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	177	318	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	34	637	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574004	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1305	91	749	1	ENST00000269305.4:c.1023_1024delCCinsTT	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	341	ttCCga/ttTTga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435258	110435258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	19	130	0	ENST00000375856.3:c.3143C>T	p.Ser1048Leu	p.S1048L	ENST00000375856	NM_003749.2	1048	tCg/tTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98212145	98212145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1223	86	729	0	ENST00000331920.6:c.3527C>T	p.Ser1176Phe	p.S1176F	ENST00000331920	NM_000264.3	1176	tCt/tTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488718	212488718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	40	625	0	ENST00000342788.4:c.2131C>T	p.Arg711Cys	p.R711C	ENST00000342788	NM_005235.2	711	Cgt/Tgt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851588	134851588	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	59	561	0	ENST00000398015.3:c.994A>T	p.Ile332Phe	p.I332F	ENST00000398015	NM_004441.4	332	Atc/Ttc																																																																														
ATR	545	MSKCC	GRCh37	3	142268985	142268985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	75	693	1	ENST00000350721.4:c.2965C>T	p.Arg989Cys	p.R989C	ENST00000350721	NM_001184.3	989	Cgt/Tgt																																																																														
SDHA	6389	MSKCC	GRCh37	5	235387	235387	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	532	501	0	ENST00000264932.6:c.1193A>T	p.Glu398Val	p.E398V	ENST00000264932	NM_004168.2	398	gAg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295255	1295255	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	209	379	2				ENST00000310581	NM_198253.2																																																																																
PMS2	5395	MSKCC	GRCh37	7	6029582	6029582	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	52	509	0	ENST00000265849.7:c.993C>G	p.Cys331Trp	p.C331W	ENST00000265849	NM_000535.5	331	tgC/tgG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259427	55259427	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	57	468	0	ENST00000275493.2:c.2485G>T	p.Glu829Ter	p.E829*	ENST00000275493	NM_005228.3	829	Gag/Tag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069154	5069154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	71	521	0	ENST00000381652.3:c.1459C>T	p.Arg487Cys	p.R487C	ENST00000381652	NM_004972.3	487	Cgc/Tgc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652281	48652281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	66	494	4	ENST00000376670.3:c.952G>A	p.Gly318Ser	p.G318S	ENST00000376670	NM_002049.3	318	Ggc/Agc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894985	101894985	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1331	79	552	0	ENST00000374994.4:c.539delT	p.Leu180Ter	p.L180*	ENST00000374994	NM_004612.2	180	Tta/ta																																																																														
SDHA	6389	MSKCC	GRCh37	5	235403	235404	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	462	495	0	ENST00000264932.6:c.1209_1210delinsTT	p.Pro404Ser	p.P404S	ENST00000264932	NM_004168.2	403	ctCCcc/ctTTcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55225404	55225405	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	61	574	3	ENST00000275493.2:c.1256_1257delinsTT	p.Ala419Val	p.A419V	ENST00000275493	NM_005228.3	419	gCC/gTT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971016	21971017	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	94	345	0	ENST00000304494.5:c.341_342delCCinsTT	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCC/cTT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971016	21971017	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	94	345	0	ENST00000304494.5:c.341_342delCCinsTT	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCC/cTT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971016	21971017	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	95	354	0	ENST00000304494.5:c.341_342delCCinsTT	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCC/cTT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	313	365	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CCND2	894	MSKCC	GRCh37	12	4388008	4388008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	130	415	1	ENST00000261254.3:c.494G>A	p.Arg165His	p.R165H	ENST00000261254	NM_001759.3	165	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428626	49428626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	167	500	1	ENST00000301067.7:c.10324G>A	p.Gly3442Ser	p.G3442S	ENST00000301067	NM_003482.3	3442	Ggc/Agc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54948464	54948464	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	111	378	2	ENST00000312783.6:c.854G>T	p.Arg285Met	p.R285M	ENST00000312783	NM_198436.1	285	aGg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7572928	7572929	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	CA	CA	-			P-0006953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	154	470	0	ENST00000269305.4:c.1180_1181del	p.Ter394ThrfsTer76	p.*394Tfs*76	ENST00000269305	NM_001126112.2	394	TGa/a																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0006983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	294	310	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347843	89347843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	440	551	0	ENST00000301030.4:c.5107G>A	p.Val1703Met	p.V1703M	ENST00000301030	NM_001256183.1	1703	Gtg/Atg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350485	15350485	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200957651		P-0006983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	127	240	1	ENST00000263377.2:c.3430G>A	p.Val1144Ile	p.V1144I	ENST00000263377	NM_058243.2	1144	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112175232	112175232	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	335	305	0	ENST00000257430.4:c.3942del	p.Arg1314SerfsTer7	p.R1314Sfs*7	ENST00000257430	NM_000038.5	1314	aGg/ag																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4101279	4101280	+	splice_acceptor_variant	Splice_Site	DEL	CT	CT	-			P-0006983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	128	402	0	ENST00000262948.5:c.529-2_529-1del		p.X177_splice	ENST00000262948	NM_030662.3	177																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	205	325	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	517	356	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056286	27056286	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	352	329	0	ENST00000324856.7:c.1282C>T	p.Gln428Ter	p.Q428*	ENST00000324856	NM_006015.4	428	Cag/Tag																																																																														
BCL6	604	MSKCC	GRCh37	3	187447377	187447377	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	39	235	0	ENST00000232014.4:c.816T>A	p.Asp272Glu	p.D272E	ENST00000232014	NM_001130845.1	272	gaT/gaA																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786425	135786425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	298	505	0	ENST00000298552.3:c.1105C>G	p.Leu369Val	p.L369V	ENST00000298552	NM_001162426.1	369	Ctg/Gtg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786931	135786931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	254	403	0	ENST00000298552.3:c.938C>G	p.Ser313Cys	p.S313C	ENST00000298552	NM_001162426.1	313	tCc/tGc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651992	36652012	+	inframe_deletion	In_Frame_Del	DEL	GGCGGGCTGCATCCAGGAGGC	GGCGGGCTGCATCCAGGAGGC	-			P-0007002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	338	351	2	ENST00000244741.5:c.114_134del	p.Met38_Ala45delinsIle	p.M38_A45delinsI	ENST00000244741	NM_000389.4	38	atGGCGGGCTGCATCCAGGAGGCc/atc																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651943	36651944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGCA			P-0007002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	315	286	0	ENST00000244741.5:c.69_70insACGGC	p.Pro24ThrfsTer9	p.P24Tfs*9	ENST00000244741	NM_000389.4	22	ttc/ttCGGCAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026638	48026642	+	missense_variant	Missense_Mutation	ONP	GATAG	GATAG	CATAA			P-0007002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	70	298	0	ENST00000234420.5:c.1516_1520delinsCATAA	p.Asp506_Arg507delinsHisLys	p.D506_R507delinsHK	ENST00000234420	NM_000179.2	506	GATAGa/CATAAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	536	491	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	317	321	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	49047495	49047495	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	121	149	0	ENST00000267163.4:c.2490-1G>A		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
H3F3A	3020	MSKCC	GRCh37	1	226253367	226253367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	144	146	0	ENST00000366813.1:c.139G>A	p.Val47Met	p.V47M	ENST00000366813		47	Gtg/Atg																																																																														
KDR	3791	MSKCC	GRCh37	4	55948174	55948174	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	262	327	0	ENST00000263923.4:c.3797C>G	p.Ser1266Ter	p.S1266*	ENST00000263923	NM_002253.2	1266	tCa/tGa																																																																														
KDR	3791	MSKCC	GRCh37	4	55955568	55955568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	435	432	0	ENST00000263923.4:c.3377G>A	p.Arg1126Lys	p.R1126K	ENST00000263923	NM_002253.2	1126	aGg/aAg																																																																														
RB1	5925	MSKCC	GRCh37	13	48941685	48941694	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCAAGATT	ATGCAAGATT	-			P-0007017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	152	168	0	ENST00000267163.4:c.997_1006del	p.Ala333PhefsTer13	p.A333Ffs*13	ENST00000267163	NM_000321.2	332	gATGCAAGATTa/ga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105637	27105638	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0007017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	544	462	0	ENST00000324856.7:c.5248_5249del	p.Phe1750GlnfsTer5	p.F1750Qfs*5	ENST00000324856	NM_006015.4	1750	TTc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	155	384	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	86	525	0	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979391	2979391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	231	377	0	ENST00000396946.4:c.856A>G	p.Ile286Val	p.I286V	ENST00000396946	NM_032415.4	286	Atc/Gtc																																																																														
RET	5979	MSKCC	GRCh37	10	43620429	43620429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	113	482	0	ENST00000355710.3:c.3038G>A	p.Arg1013Lys	p.R1013K	ENST00000355710	NM_020975.4	1013	aGa/aAa																																																																														
SUFU	51684	MSKCC	GRCh37	10	104357048	104357048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	103	387	0	ENST00000369902.3:c.908A>C	p.Lys303Thr	p.K303T	ENST00000369902	NM_016169.3	303	aAa/aCa																																																																														
ATM	472	MSKCC	GRCh37	11	108128226	108128226	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	102	464	2	ENST00000278616.4:c.2269G>T	p.Gly757Ter	p.G757*	ENST00000278616	NM_000051.3	757	Gga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108201096	108201096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	96	329	0	ENST00000278616.4:c.7463G>A	p.Cys2488Tyr	p.C2488Y	ENST00000278616	NM_000051.3	2488	tGt/tAt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030470	47030470	+	intron_variant	Intron	SNP	G	G	T			P-0007044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	158	557	2	ENST00000329236.7:c.201+1573G>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
RAC1	5879	MSKCC	GRCh37	7	6426860	6426860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	131	456	0	ENST00000356142.4:c.53G>A	p.Cys18Tyr	p.C18Y	ENST00000356142	NM_018890.3	18	tGc/tAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	173	440	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	169	401	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39550422	39550423	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	71	279	1	ENST00000262039.4:c.531+9dupA		p.X177_splice	ENST00000262039	NM_002647.2	177																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	137	257	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	139	305	0	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
ABL1	25	MSKCC	GRCh37	9	133760106	133760106	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229071		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	27	422	0	ENST00000318560.5:c.2429C>T	p.Pro810Leu	p.P810L	ENST00000318560	NM_005157.4	810	cCg/cTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332272	70332273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	169	684	1	ENST00000373644.4:c.184dupA	p.Thr62AsnfsTer4	p.T62Nfs*4	ENST00000373644	NM_030625.2	59	-/A																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	19	122	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	183	368	7	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	178	379	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271190	38271190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	101	263	0	ENST00000425967.3:c.2518C>T	p.Arg840Ter	p.R840*	ENST00000425967	NM_001174067.1	840	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	62	380	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																														
CIC	23152	MSKCC	GRCh37	19	42795016	42795016	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150818299		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	192	411	0	ENST00000575354.2:c.2096C>T	p.Ala699Val	p.A699V	ENST00000575354	NM_015125.3	699	gCg/gTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	230	415	3	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443613	52443613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	212	365	0	ENST00000460680.1:c.79delG	p.Val27CysfsTer45	p.V27Cfs*45	ENST00000460680	NM_004656.3	27	Gtg/tg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	45	511	0	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	115	264	0	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	88	240	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578397	7578398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	131	309	0	ENST00000269305.4:c.532dupC	p.His178ProfsTer3	p.H178Pfs*3	ENST00000269305	NM_001126112.2	178	cac/cCac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	34	80	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	189	455	5	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	134	381	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	37	448	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	231	804	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	160	358	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	253	726	1	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136799	2136799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	101	568	0	ENST00000219476.3:c.4916G>A	p.Arg1639His	p.R1639H	ENST00000219476	NM_000548.3	1639	cGc/cAc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	191	457	5	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223240	41223240	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	142	320	0	ENST00000357654.3:c.4691T>C	p.Leu1564Pro	p.L1564P	ENST00000357654	NM_007294.3	1564	cTg/cCg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	245	520	3	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	263	593	6	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	152	405	3	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851255	156851255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	49	500	2	ENST00000524377.1:c.2212G>A	p.Asp738Asn	p.D738N	ENST00000524377	NM_002529.3	738	Gac/Aac																																																																														
CASP8	841	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	213	456	2	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430901	181430901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	192	582	1	ENST00000325404.1:c.758del	p.Pro253LeufsTer21	p.P253Lfs*21	ENST00000325404	NM_003106.3	251	agC/ag																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	183	461	6	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463298	25463300	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	26	328	0	ENST00000264709.3:c.2193_2195delCTT	p.Phe732del	p.F732del	ENST00000264709	NM_175629.2	731	ttCTTt/ttt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514608	103514608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	171	368	1	ENST00000355739.4:c.1109G>A	p.Arg370His	p.R370H	ENST00000355739	NM_000123.3	370	cGt/cAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931471	131931471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	129	292	2	ENST00000265335.6:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000265335		726	Cgt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484261	57484261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	138	288	6	ENST00000371085.3:c.575C>T	p.Pro192Leu	p.P192L	ENST00000371085	NM_000516.4	192	cCg/cTg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285913	38285914	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCA			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	200	516	2	ENST00000425967.3:c.495_497dupTGA	p.Asp166dup	p.D166dup	ENST00000425967	NM_001174067.1	166	gac/gaTGAc																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736165	204736166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	157	536	0	ENST00000302823.3:c.529dupT	p.Tyr177LeufsTer2	p.Y177Lfs*2	ENST00000302823	NM_005214.4	174	-/T																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533938	63533939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	92	195	0	ENST00000307078.5:c.1214_1215dup	p.Gly406ArgfsTer53	p.G406Rfs*53	ENST00000307078	NM_004655.3	405	-/AG																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933400	39933400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	168	487	0	ENST00000378444.4:c.1199del	p.Gly400AlafsTer42	p.G400Afs*42	ENST00000378444	NM_001123385.1	400	gGc/gc																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494651	2494651	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	242	492	2	ENST00000355716.4:c.791T>C	p.Val264Ala	p.V264A	ENST00000355716	NM_003820.2	264	gTc/gCc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777114	9777114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	198	472	2	ENST00000377346.4:c.878C>A	p.Ala293Asp	p.A293D	ENST00000377346	NM_005026.3	293	gCc/gAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259672	11259672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	221	422	3	ENST00000361445.4:c.4033C>T	p.Leu1345Phe	p.L1345F	ENST00000361445	NM_004958.3	1345	Ctc/Ttc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258016	16258016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	149	374	0	ENST00000375759.3:c.5281A>G	p.Lys1761Glu	p.K1761E	ENST00000375759	NM_015001.2	1761	Aaa/Gaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089512	27089512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	103	498	0	ENST00000324856.7:c.2468A>G	p.Tyr823Cys	p.Y823C	ENST00000324856	NM_006015.4	823	tAc/tGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094396	27094396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	194	367	2	ENST00000324856.7:c.3104C>T	p.Ala1035Val	p.A1035V	ENST00000324856	NM_006015.4	1035	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106327	27106327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	197	391	2	ENST00000324856.7:c.5938C>T	p.Arg1980Cys	p.R1980C	ENST00000324856	NM_006015.4	1980	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107132	27107132	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	136	200	0	ENST00000324856.7:c.6743A>T	p.His2248Leu	p.H2248L	ENST00000324856	NM_006015.4	2248	cAc/cTc																																																																														
MPL	4352	MSKCC	GRCh37	1	43803817	43803817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs148434485		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	157	599	0	ENST00000372470.3:c.127C>T	p.Arg43Ter	p.R43*	ENST00000372470	NM_005373.2	43	Cga/Tga																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45799143	45799143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	217	511	1	ENST00000372115.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000372115	NM_001048171.1	83	cGa/cAa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78421008	78421008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	173	314	0	ENST00000370768.2:c.1712A>G	p.Gln571Arg	p.Q571R	ENST00000370768	NM_003902.3	571	cAg/cGg																																																																														
PARP1	142	MSKCC	GRCh37	1	226564969	226564969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	163	428	2	ENST00000366794.5:c.1781C>T	p.Thr594Met	p.T594M	ENST00000366794	NM_001618.3	594	aCg/aTg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028226	48028226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	202	522	0	ENST00000234420.5:c.3104G>A	p.Arg1035Gln	p.R1035Q	ENST00000234420	NM_000179.2	1035	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030679	48030679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	152	451	0	ENST00000234420.5:c.3293G>A	p.Cys1098Tyr	p.C1098Y	ENST00000234420	NM_000179.2	1098	tGc/tAc																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907671	111907671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	207	521	1	ENST00000393256.3:c.445G>A	p.Ala149Thr	p.A149T	ENST00000393256	NM_006538.4	149	Gcc/Acc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038136	128038136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	229	419	2	ENST00000285398.2:c.1414C>T	p.Arg472Cys	p.R472C	ENST00000285398	NM_000122.1	472	Cgc/Tgc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198270084	198270084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	196	433	0	ENST00000335508.6:c.1352G>A	p.Arg451Gln	p.R451Q	ENST00000335508	NM_012433.2	451	cGa/cAa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285851	198285851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	138	368	0	ENST00000335508.6:c.202G>A	p.Asp68Asn	p.D68N	ENST00000335508	NM_012433.2	68	Gat/Aat																																																																														
RAF1	5894	MSKCC	GRCh37	3	12650368	12650368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	171	396	1	ENST00000251849.4:c.478C>T	p.Leu160Phe	p.L160F	ENST00000251849	NM_002880.3	160	Ctc/Ttc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162920	47162920	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	169	452	2	ENST00000409792.3:c.3206T>C	p.Val1069Ala	p.V1069A	ENST00000409792	NM_014159.6	1069	gTt/gCt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940819	49940819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	419	706	4	ENST00000296474.3:c.224G>A	p.Arg75His	p.R75H	ENST00000296474	NM_002447.2	75	cGc/cAc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682380	52682380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	99	501	1	ENST00000394830.3:c.793C>T	p.Pro265Ser	p.P265S	ENST00000394830	NM_018313.4	265	Cct/Tct																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417882	138417882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	168	349	3	ENST00000289153.2:c.1637C>A	p.Pro546His	p.P546H	ENST00000289153	NM_006219.2	546	cCc/cAc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190762	185190762	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	125	288	0	ENST00000265026.3:c.1644-1G>T		p.X548_splice	ENST00000265026	NM_004721.4	548																																																																															
FGFR3	2261	MSKCC	GRCh37	4	1801241	1801241	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199740841		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	121	353	3	ENST00000260795.2:c.370C>T	p.Arg124Trp	p.R124W	ENST00000260795		124	Cgg/Tgg																																																																														
KIT	3815	MSKCC	GRCh37	4	55524239	55524239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	140	487	4	ENST00000288135.5:c.58G>A	p.Val20Ile	p.V20I	ENST00000288135	NM_000222.2	20	Gtc/Atc																																																																														
KDR	3791	MSKCC	GRCh37	4	55968100	55968100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	177	427	0	ENST00000263923.4:c.2230G>T	p.Gly744Cys	p.G744C	ENST00000263923	NM_002253.2	744	Ggc/Tgc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66218785	66218785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	95	497	0	ENST00000273854.3:c.2273A>G	p.Asn758Ser	p.N758S	ENST00000273854	NM_004439.5	758	aAt/aGt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467842	66467842	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	185	425	0	ENST00000273854.3:c.427G>T	p.Gly143Ter	p.G143*	ENST00000273854	NM_004439.5	143	Gga/Tga																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384712	84384712	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	96	343	0	ENST00000321945.7:c.731T>C	p.Val244Ala	p.V244A	ENST00000321945	NM_139076.2	244	gTa/gCa																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84391501	84391501	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	33	145	0	ENST00000321945.7:c.331A>G	p.Thr111Ala	p.T111A	ENST00000321945	NM_139076.2	111	Acg/Gcg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538277	187538277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	119	407	1	ENST00000441802.2:c.8957G>T	p.Arg2986Met	p.R2986M	ENST00000441802	NM_005245.3	2986	aGg/aTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38953624	38953624	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199645898		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	81	299	0	ENST00000357387.3:c.2729G>A	p.Arg910His	p.R910H	ENST00000357387	NM_152756.3	910	cGt/cAt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672801	86672801	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	164	353	0	ENST00000274376.6:c.2288A>G	p.Glu763Gly	p.E763G	ENST00000274376	NM_002890.2	763	gAa/gGa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672859	86672859	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	62	229	1	ENST00000274376.6:c.2344+2T>C		p.X782_splice	ENST00000274376	NM_002890.2	782																																																																															
APC	324	MSKCC	GRCh37	5	112151246	112151246	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	242	509	0	ENST00000257430.4:c.889A>G	p.Thr297Ala	p.T297A	ENST00000257430	NM_000038.5	297	Aca/Gca																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459822	149459822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	160	438	0	ENST00000286301.3:c.385C>T	p.Leu129Phe	p.L129F	ENST00000286301	NM_005211.3	129	Ctc/Ttc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509421	149509421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	92	529	2	ENST00000261799.4:c.1478G>A	p.Ser493Asn	p.S493N	ENST00000261799	NM_002609.3	493	aGc/aAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057276	180057276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	134	470	2	ENST00000261937.6:c.462G>A	p.Met154Ile	p.M154I	ENST00000261937	NM_182925.4	154	atG/atA																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250754	26250754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	322	895	2	ENST00000446824.2:c.80G>A	p.Arg27His	p.R27H	ENST00000446824	NM_021018.2	27	cGc/cAc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30668387	30668387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	221	630	2	ENST00000376406.3:c.6125G>A	p.Cys2042Tyr	p.C2042Y	ENST00000376406	NM_014641.2	2042	tGc/tAc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288846	33288846	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	149	228	2	ENST00000374542.5:c.706T>G	p.Phe236Val	p.F236V	ENST00000374542	NM_001141970.1	236	Ttt/Gtt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068015	94068015	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	228	676	3	ENST00000369303.4:c.947A>G	p.Tyr316Cys	p.Y316C	ENST00000369303	NM_004440.3	316	tAt/tGt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687384	117687384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	178	419	3	ENST00000368508.3:c.2667G>A	p.Met889Ile	p.M889I	ENST00000368508	NM_002944.2	889	atG/atA																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971366	13971366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	41	369	0	ENST00000405192.2:c.563G>A	p.Arg188His	p.R188H	ENST00000405192	NM_001163147.1	188	cGc/cAc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468059	50468059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	114	309	1	ENST00000331340.3:c.1294C>T	p.His432Tyr	p.H432Y	ENST00000331340	NM_006060.4	432	Cac/Tac																																																																														
SMO	6608	MSKCC	GRCh37	7	128852243	128852243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149170801		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	45	444	1	ENST00000249373.3:c.2315G>A	p.Arg772His	p.R772H	ENST00000249373	NM_005631.4	772	cGc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845414	151845414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	200	361	0	ENST00000262189.6:c.13598G>A	p.Arg4533Gln	p.R4533Q	ENST00000262189	NM_170606.2	4533	cGa/cAa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737414	145737414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	115	276	1	ENST00000428558.2:c.3273G>T	p.Gln1091His	p.Q1091H	ENST00000428558	NM_004260.3	1091	caG/caT																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739038	145739038	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	227	420	1	ENST00000428558.2:c.2117A>G	p.Tyr706Cys	p.Y706C	ENST00000428558	NM_004260.3	706	tAc/tGc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87359921	87359921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	42	485	1	ENST00000277120.3:c.1229C>T	p.Thr410Ile	p.T410I	ENST00000277120		410	aCc/aTc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760739	133760739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	191	518	0	ENST00000318560.5:c.3062G>A	p.Arg1021Gln	p.R1021Q	ENST00000318560	NM_005157.4	1021	cGg/cAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391913	139391913	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	241	578	1	ENST00000277541.6:c.6278T>C	p.Met2093Thr	p.M2093T	ENST00000277541	NM_017617.3	2093	aTg/aCg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395287	139395287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	107	216	2	ENST00000277541.6:c.5651C>T	p.Pro1884Leu	p.P1884L	ENST00000277541	NM_017617.3	1884	cCg/cTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137232	64137232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	232	518	1	ENST00000334205.4:c.1664C>T	p.Ala555Val	p.A555V	ENST00000334205	NM_003942.2	555	gCg/gTg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633614	69633614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	30	67	1	ENST00000334134.2:c.88G>T	p.Gly30Cys	p.G30C	ENST00000334134	NM_005247.2	30	Ggc/Tgc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94180576	94180576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	134	523	0	ENST00000323929.3:c.1592C>A	p.Ser531Tyr	p.S531Y	ENST00000323929	NM_005591.3	531	tCt/tAt																																																																														
BIRC3	330	MSKCC	GRCh37	11	102196012	102196012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	391	688	1	ENST00000263464.3:c.772C>T	p.Arg258Cys	p.R258C	ENST00000263464	NM_001165.4	258	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108100001	108100001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	96	306	0	ENST00000278616.4:c.282G>A	p.Met94Ile	p.M94I	ENST00000278616	NM_000051.3	94	atG/atA																																																																														
KDM5A	5927	MSKCC	GRCh37	12	493279	493279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	136	454	0	ENST00000399788.2:c.284C>A	p.Ala95Glu	p.A95E	ENST00000399788	NM_001042603.1	95	gCa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398228	25398228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	155	370	1	ENST00000256078.4:c.91G>A	p.Glu31Lys	p.E31K	ENST00000256078	NM_033360.2	31	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420871	49420871	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	179	470	3	ENST00000301067.7:c.14878C>T	p.Arg4960Ter	p.R4960*	ENST00000301067	NM_003482.3	4960	Cga/Tga																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50492501	50492501	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	173	404	0	ENST00000394963.4:c.1397T>C	p.Met466Thr	p.M466T	ENST00000394963	NM_003076.4	466	aTg/aCg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435424	121435424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	95	481	0	ENST00000257555.6:c.1457A>G	p.Gln486Arg	p.Q486R	ENST00000257555		486	cAg/cGg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608473	28608473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	73	475	1	ENST00000241453.7:c.1669G>T	p.Val557Phe	p.V557F	ENST00000241453	NM_004119.2	557	Gtt/Ttt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636175	28636175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	196	468	1	ENST00000241453.7:c.197C>T	p.Ala66Val	p.A66V	ENST00000241453	NM_004119.2	66	gCg/gTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910543	32910543	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	132	700	0	ENST00000380152.3:c.2051A>G	p.Gln684Arg	p.Q684R	ENST00000380152		684	cAg/cGg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972653	32972653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	110	330	1	ENST00000380152.3:c.10003G>A	p.Glu3335Lys	p.E3335K	ENST00000380152		3335	Gaa/Aaa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134151	41134151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	238	688	2	ENST00000379561.5:c.1477G>T	p.Gly493Cys	p.G493C	ENST00000379561	NM_002015.3	493	Ggc/Tgc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41239857	41239857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	201	515	1	ENST00000379561.5:c.493T>C	p.Tyr165His	p.Y165H	ENST00000379561	NM_002015.3	165	Tac/Cac																																																																														
DIS3	22894	MSKCC	GRCh37	13	73345226	73345226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	146	453	2	ENST00000377767.4:c.1663G>A	p.Val555Met	p.V555M	ENST00000377767	NM_014953.3	555	Gtg/Atg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524735	103524735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	133	350	1	ENST00000355739.4:c.2866G>A	p.Asp956Asn	p.D956N	ENST00000355739	NM_000123.3	956	Gac/Aac																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435138	110435138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	183	342	0	ENST00000375856.3:c.3263C>T	p.Ala1088Val	p.A1088V	ENST00000375856	NM_003749.2	1088	gCg/gTg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986922	36986922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	35	296	0	ENST00000354822.5:c.767A>G	p.Gln256Arg	p.Q256R	ENST00000354822	NM_001079668.2	256	cAg/cGg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95596439	95596439	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	171	363	0	ENST00000343455.3:c.529T>C	p.Cys177Arg	p.C177R	ENST00000343455	NM_177438.2	177	Tgt/Cgt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99482542	99482542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	196	516	1	ENST00000268035.6:c.3410C>T	p.Ala1137Val	p.A1137V	ENST00000268035	NM_000875.3	1137	gCt/gTt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2120493	2120493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	220	512	2	ENST00000219476.3:c.1753C>T	p.Arg585Cys	p.R585C	ENST00000219476	NM_000548.3	585	Cgt/Tgt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225955	2225955	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	123	366	1	ENST00000326181.6:c.1746+1G>A		p.X582_splice	ENST00000326181	NM_032271.2	582																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778516	3778516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	157	701	1	ENST00000262367.5:c.6532C>T	p.His2178Tyr	p.H2178Y	ENST00000262367	NM_004380.2	2178	Cac/Tac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779017	3779017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	67	284	0	ENST00000262367.5:c.6031C>T	p.Pro2011Ser	p.P2011S	ENST00000262367	NM_004380.2	2011	Ccc/Tcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788590	3788590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	140	497	0	ENST00000262367.5:c.4364T>A	p.Ile1455Asn	p.I1455N	ENST00000262367	NM_004380.2	1455	aTt/aAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858775	9858775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	110	295	0	ENST00000330684.3:c.2626A>G	p.Ile876Val	p.I876V	ENST00000330684	NM_001134407.1	876	Att/Gtt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836327	89836327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	239	537	1	ENST00000389301.3:c.2422C>T	p.Pro808Ser	p.P808S	ENST00000389301	NM_000135.2	808	Cct/Tct																																																																														
FANCA	2175	MSKCC	GRCh37	16	89858392	89858392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	211	487	1	ENST00000389301.3:c.1168C>A	p.Leu390Ile	p.L390I	ENST00000389301	NM_000135.2	390	Ctc/Atc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17117001	17117001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	180	481	1	ENST00000285071.4:c.1708C>T	p.Arg570Cys	p.R570C	ENST00000285071	NM_144997.5	570	Cgc/Tgc																																																																														
NF1	4763	MSKCC	GRCh37	17	29528119	29528119	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	134	363	0	ENST00000358273.4:c.1127T>C	p.Met376Thr	p.M376T	ENST00000358273	NM_001042492.2	376	aTg/aCg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804180	46804180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	258	621	0	ENST00000290295.7:c.827C>T	p.Ala276Val	p.A276V	ENST00000290295	NM_006361.5	276	gCc/gTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134201	11134201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	49	401	0	ENST00000344626.4:c.2867T>C	p.Leu956Pro	p.L956P	ENST00000344626	NM_003072.3	956	cTg/cCg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145789	11145789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	173	521	1	ENST00000344626.4:c.4151C>T	p.Thr1384Met	p.T1384M	ENST00000344626	NM_003072.3	1384	aCg/aTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289660	15289660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	213	622	2	ENST00000263388.2:c.3811C>A	p.Leu1271Met	p.L1271M	ENST00000263388	NM_000435.2	1271	Ctg/Atg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349600	15349600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	154	370	2	ENST00000263377.2:c.3974G>T	p.Arg1325Met	p.R1325M	ENST00000263377	NM_058243.2	1325	aGg/aTg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18276988	18276988	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	206	405	2	ENST00000222254.8:c.1435A>G	p.Thr479Ala	p.T479A	ENST00000222254	NM_005027.3	479	Act/Gct																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867091	45867091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	148	306	0	ENST00000391945.4:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000391945	NM_000400.3	343	cGg/cAg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867145	45867145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	97	338	0	ENST00000391945.4:c.974C>T	p.Thr325Met	p.T325M	ENST00000391945	NM_000400.3	325	aCg/aTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867491	45867491	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	71	379	1	ENST00000391945.4:c.815+2T>C		p.X272_splice	ENST00000391945	NM_000400.3	272																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31385069	31385069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	192	498	3	ENST00000328111.2:c.1454G>A	p.Arg485Gln	p.R485Q	ENST00000328111	NM_006892.3	485	cGa/cAa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46275913	46275913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	203	739	1	ENST00000371998.3:c.3349G>A	p.Ala1117Thr	p.A1117T	ENST00000371998		1117	Gca/Aca																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42843873	42843873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	71	445	0	ENST00000398585.3:c.1046C>T	p.Ala349Val	p.A349V	ENST00000398585	NM_001135099.1	349	gCg/gTg																																																																														
NF2	4771	MSKCC	GRCh37	22	30070869	30070869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	212	511	0	ENST00000338641.4:c.1385G>A	p.Arg462His	p.R462H	ENST00000338641	NM_000268.3	462	cGc/cAc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222384	53222384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	154	529	5	ENST00000375401.3:c.4448G>A	p.Arg1483Gln	p.R1483Q	ENST00000375401	NM_004187.3	1483	cGg/cAg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227807	53227807	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	213	527	2	ENST00000375401.3:c.2381T>C	p.Leu794Pro	p.L794P	ENST00000375401	NM_004187.3	794	cTg/cCg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245008	53245008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	91	635	2	ENST00000375401.3:c.932G>A	p.Arg311Lys	p.R311K	ENST00000375401	NM_004187.3	311	aGg/aAg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246988	53246988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	180	570	0	ENST00000375401.3:c.512C>T	p.Ala171Val	p.A171V	ENST00000375401	NM_004187.3	171	gCc/gTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412806	63412806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	157	544	1	ENST00000330258.3:c.361C>T	p.Pro121Ser	p.P121S	ENST00000330258	NM_152424.3	121	Cct/Tct																																																																														
AR	367	MSKCC	GRCh37	X	66766208	66766208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	100	272	2	ENST00000374690.3:c.1220G>A	p.Arg407His	p.R407H	ENST00000374690	NM_000044.3	407	cGc/cAc																																																																														
AR	367	MSKCC	GRCh37	X	66766426	66766426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	38	176	0	ENST00000374690.3:c.1438C>A	p.Pro480Thr	p.P480T	ENST00000374690	NM_000044.3	480	Ccc/Acc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938174	76938174	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	49	531	0	ENST00000373344.5:c.2574del	p.Gly859GlufsTer10	p.G859Efs*10	ENST00000373344	NM_000489.3	858	aaA/aa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698141	47698145	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAC	AAAAC	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	70	460	1	ENST00000233146.2:c.1700_1704del	p.Lys567ArgfsTer3	p.K567Rfs*3	ENST00000233146	NM_000251.2	567	AAAACa/a																																																																														
ERG	2078	MSKCC	GRCh37	21	39775476	39775477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	147	395	0	ENST00000288319.7:c.543dup	p.Ser182GlnfsTer26	p.S182Qfs*26	ENST00000288319	NM_182918.3	181	-/C																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436011	110436011	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	71	316	2	ENST00000375856.3:c.2390del	p.Gly797AlafsTer30	p.G797Afs*30	ENST00000375856	NM_003749.2	797	gGc/gc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588798	52588798	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	178	458	4	ENST00000394830.3:c.4230del	p.Pro1411LeufsTer21	p.P1411Lfs*21	ENST00000394830	NM_018313.4	1410	ggG/gg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295203	1295204	+	upstream_gene_variant	5'Flank	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	72	246	0				ENST00000310581	NM_198253.2																																																																																
PIK3R3	8503	MSKCC	GRCh37	1	46531806	46531807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	149	502	0	ENST00000262741.5:c.540dupA	p.Leu181ThrfsTer13	p.L181Tfs*13	ENST00000262741	NM_003629.3	180	-/A																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420988	49420989	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	85	442	0	ENST00000301067.7:c.14760dup	p.Ala4922GlyfsTer10	p.A4922Gfs*10	ENST00000301067	NM_003482.3	4920	-/C																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	158	406	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771987	135771988	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs118203743		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	34	148	1	ENST00000298552.3:c.3127_3129dup	p.Ser1043dup	p.S1043dup	ENST00000298552	NM_001162426.1	1043	-/AGC																																																																														
IDH1	3417	MSKCC	GRCh37	2	209116262	209116263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs754375602		P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	84	327	0	ENST00000345146.2:c.13dup	p.Ile5AsnfsTer13	p.I5Nfs*13	ENST00000345146	NM_005896.2	5	atc/aAtc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5216758	5216758	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	48	479	0	ENST00000357368.4:c.4069del	p.Leu1357SerfsTer59	p.L1357Sfs*59	ENST00000357368	NM_002850.3	1357	Ctc/tc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23635362	23635363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	36	451	0	ENST00000261584.4:c.2800_2801dup	p.Ala935Ter	p.A935*	ENST00000261584	NM_024675.3	934	gta/gtGTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828228	72828228	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	193	792	1	ENST00000268489.5:c.8353del	p.Leu2785SerfsTer4	p.L2785Sfs*4	ENST00000268489	NM_006885.3	2785	Ctc/tc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443668	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	184	457	0	ENST00000301067.7:c.3703_3704del	p.Gly1235TrpfsTer14	p.G1235Wfs*14	ENST00000301067	NM_003482.3	1235	GGt/t																																																																														
BRCA1	672	MSKCC	GRCh37	17	41247906	41247907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	142	500	0	ENST00000357654.3:c.626dup	p.Gln210SerfsTer6	p.Q210Sfs*6	ENST00000357654	NM_007294.3	209	cct/ccCt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11273523	11273524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	181	494	2	ENST00000361445.4:c.3217dup	p.Gln1073ProfsTer13	p.Q1073Pfs*13	ENST00000361445	NM_004958.3	1073	cag/cCag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	128	419	0	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020764	37020764	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	148	531	1	ENST00000358127.4:c.81del	p.Phe27LeufsTer2	p.F27Lfs*2	ENST00000358127	NM_001280556.1	27	ttT/tt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287213	33287213	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	218	316	1	ENST00000374542.5:c.1884delC	p.Cys629AlafsTer16	p.C629Afs*16	ENST00000374542	NM_001141970.1	628	ccC/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426786	49426788	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	83	245	0	ENST00000301067.7:c.11700_11702del	p.Gln3905del	p.Q3905del	ENST00000301067	NM_003482.3	3900	ctTCAg/ctg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528592	157528594	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	138	328	0	ENST00000346085.5:c.6320_6322del	p.Arg2107del	p.R2107del	ENST00000346085	NM_020732.3	2106	aGTCgt/agt																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84383944	84383944	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	87	371	0	ENST00000321945.7:c.908del	p.Asn303IlefsTer17	p.N303Ifs*17	ENST00000321945	NM_139076.2	303	aAt/at																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945008	31945008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	75	646	0	ENST00000340398.3:c.93delC	p.Ser32LeufsTer5	p.S32Lfs*5	ENST00000340398	NM_001013699.2	31	ccC/cc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660807	227660808	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	74	331	1	ENST00000305123.5:c.2645_2647dupAGC	p.Gln882dup	p.Q882dup	ENST00000305123	NM_005544.2	882	ccc/cAGCcc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18272109	18272123	+	inframe_deletion	In_Frame_Del	DEL	CCGGCGCTGGAGCCA	CCGGCGCTGGAGCCA	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	26	33	0	ENST00000222254.8:c.622_636del	p.Ala208_Pro212del	p.A208_P212del	ENST00000222254	NM_005027.3	207	CCGGCGCTGGAGCCA/-																																																																														
JUN	3725	MSKCC	GRCh37	1	59247894	59247894	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	493	563	1	ENST00000371222.2:c.849del	p.Val284Ter	p.V284*	ENST00000371222	NM_002228.3	283	aaA/aa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630434	187630435	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	223	570	3	ENST00000441802.2:c.547dup	p.Glu183GlyfsTer7	p.E183Gfs*7	ENST00000441802	NM_005245.3	183	gaa/gGaa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133737	41133738	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	216	738	0	ENST00000379561.5:c.1890dup	p.Asn631Ter	p.N631*	ENST00000379561	NM_002015.3	630	-/T																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56170949	56170949	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	78	368	0	ENST00000399503.3:c.1780del	p.Ala594ProfsTer62	p.A594Pfs*62	ENST00000399503	NM_005921.1	593	Ggg/gg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190819	185190819	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	84	460	0	ENST00000265026.3:c.1703delC	p.Pro568LeufsTer39	p.P568Lfs*39	ENST00000265026	NM_004721.4	567	tCc/tc																																																																														
AR	367	MSKCC	GRCh37	X	66765489	66765489	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	64	448	1	ENST00000374690.3:c.503del	p.Gly168AlafsTer7	p.G168Afs*7	ENST00000374690	NM_000044.3	167	ctG/ct																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18524120	18524120	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	76	380	1	ENST00000266497.5:c.1635del	p.Glu548LysfsTer2	p.E548Kfs*2	ENST00000266497		544	aaT/aa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641388	18641389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	72	239	0	ENST00000266497.5:c.2393dup	p.Asn798LysfsTer5	p.N798Kfs*5	ENST00000266497		796	cta/ctAa																																																																														
INSR	3643	MSKCC	GRCh37	19	7119460	7119461	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	AG			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	136	437	0	ENST00000302850.5:c.3793_3794insCT	p.Val1265AlafsTer16	p.V1265Afs*16	ENST00000302850	NM_000208.2	1265	gtc/gCTtc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243444	46243444	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	200	609	0	ENST00000334344.6:c.1800del	p.Lys600AsnfsTer47	p.K600Nfs*47	ENST00000334344	NM_152641.2	599	gtA/gt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928976	44928976	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	303	695	2	ENST00000377967.4:c.2080del	p.Ala694LeufsTer21	p.A694Lfs*21	ENST00000377967	NM_021140.2	692	caG/ca																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103513936	103513936	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	170	536	0	ENST00000355739.4:c.755del	p.Lys252ArgfsTer3	p.K252Rfs*3	ENST00000355739	NM_000123.3	251	cAa/ca																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	157	385	1	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024636	31024637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	155	518	0	ENST00000375687.4:c.4127dup	p.Pro1377SerfsTer3	p.P1377Sfs*3	ENST00000375687	NM_015338.5	1374	gtg/gtGg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271331	18271331	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	221	480	0	ENST00000222254.8:c.377del	p.Pro126LeufsTer4	p.P126Lfs*4	ENST00000222254	NM_005027.3	125	Ccc/cc																																																																														
CIC	23152	MSKCC	GRCh37	19	42797204	42797205	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	29	359	0	ENST00000575354.2:c.3570dup	p.Ser1191ValfsTer3	p.S1191Vfs*3	ENST00000575354	NM_015125.3	1189	gtg/gtGg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191141	2191141	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	223	521	3	ENST00000398665.3:c.399delC	p.Glu134ArgfsTer14	p.E134Rfs*14	ENST00000398665	NM_032482.2	132	tCc/tc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627306	37627307	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	187	481	0	ENST00000447079.4:c.1221_1222insTGC	p.Ala407_Ala408insCys	p.A407_A408insC	ENST00000447079	NM_015083.1	407	-/TGC																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202148	67202148	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	146	379	4	ENST00000312629.5:c.1255del	p.Arg419GlyfsTer75	p.R419Gfs*75	ENST00000312629	NM_003952.2	417	agC/ag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118380758	118380758	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	183	495	1	ENST00000534358.1:c.11001del	p.Lys3667AsnfsTer30	p.K3667Nfs*30	ENST00000534358	NM_005933.3	3666	Aaa/aa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852611	63852611	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	174	320	1	ENST00000279873.7:c.3393del	p.Phe1131LeufsTer20	p.F1131Lfs*20	ENST00000279873	NM_032199.2	1130	aTt/at																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527651	157527652	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	207	428	2	ENST00000346085.5:c.5381dup	p.Asn1795GlufsTer7	p.N1795Efs*7	ENST00000346085	NM_020732.3	1792	-/A																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027151	71027152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	221	384	0	ENST00000318789.4:c.1175_1176insGA	p.Lys393ThrfsTer23	p.K393Tfs*23	ENST00000318789	NM_032682.5	392	tcc/tcGAc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085825	16085825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	52	444	0	ENST00000281043.3:c.1005del	p.Ser336LeufsTer15	p.S336Lfs*15	ENST00000281043	NM_005378.4	334	gCc/gc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523008	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	198	541	1	ENST00000264709.3:c.175_176dup	p.Val60ArgfsTer13	p.V60Rfs*13	ENST00000264709	NM_175629.2	59	ccg/ccCCg																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2488147	2488147	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	237	435	4	ENST00000355716.4:c.48del	p.Thr18ProfsTer4	p.T18Pfs*4	ENST00000355716	NM_003820.2	15	aCc/ac																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211550	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0007147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	169	390	8	ENST00000331920.6:c.3605_3606delinsT	p.Pro1202LeufsTer53	p.P1202Lfs*53	ENST00000331920	NM_000264.3	1202	cCC/cT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0007238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	324	189	2				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0007238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	435	401	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225342959	225342959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	278	424	0	ENST00000264414.4:c.2133G>A	p.Met711Ile	p.M711I	ENST00000264414	NM_003590.4	711	atG/atA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	50	193	2				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1763	292	774	2	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	153	450	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	86	333	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682533	37682533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	107	354	1	ENST00000447079.4:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000447079	NM_015083.1	1242	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295253	1295253	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	43	209	0				ENST00000310581	NM_198253.2																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139413214	139413214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	42	348	0	ENST00000277541.6:c.928G>A	p.Gly310Arg	p.G310R	ENST00000277541	NM_017617.3	310	Ggg/Agg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024227751		P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	31	161	0	ENST00000305123.5:c.109G>A	p.Glu37Lys	p.E37K	ENST00000305123	NM_005544.2	37	Gag/Aag																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056413	26056413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	89	200	0	ENST00000343677.2:c.244C>T	p.Leu82Phe	p.L82F	ENST00000343677	NM_005319.3	82	Ctt/Ttt																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133979	41133979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149675484		P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1476	378	700	0	ENST00000379561.5:c.1649C>T	p.Ser550Leu	p.S550L	ENST00000379561	NM_002015.3	550	tCg/tTg																																																																														
ALK	238	MSKCC	GRCh37	2	29498327	29498327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	95	346	1	ENST00000389048.3:c.1853G>A	p.Gly618Glu	p.G618E	ENST00000389048	NM_004304.4	618	gGa/gAa																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514302	69514302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	81	346	0	ENST00000294312.3:c.379C>T	p.Arg127Cys	p.R127C	ENST00000294312	NM_005117.2	127	Cgc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257873	16257873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	54	122	0	ENST00000375759.3:c.5138C>T	p.Ala1713Val	p.A1713V	ENST00000375759	NM_015001.2	1713	gCc/gTc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243800912	243800912	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	90	471	1	ENST00000263826.5:c.561+1G>A		p.X187_splice	ENST00000263826	NM_005465.4	187																																																																															
INPP4A	3631	MSKCC	GRCh37	2	99182196	99182196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	92	379	0	ENST00000074304.5:c.2261C>T	p.Ser754Phe	p.S754F	ENST00000074304	NM_001134224.1	754	tCc/tTc																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881600	111881600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	145	403	0	ENST00000393256.3:c.278C>T	p.Ser93Phe	p.S93F	ENST00000393256	NM_006538.4	93	tCc/tTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198270079	198270079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	101	394	0	ENST00000335508.6:c.1357A>G	p.Met453Val	p.M453V	ENST00000335508	NM_012433.2	453	Atg/Gtg																																																																														
BCL6	604	MSKCC	GRCh37	3	187447207	187447207	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	50	295	0	ENST00000232014.4:c.986T>C	p.Val329Ala	p.V329A	ENST00000232014	NM_001130845.1	329	gTt/gCt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55153703	55153703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	108	417	0	ENST00000257290.5:c.2669C>T	p.Ser890Phe	p.S890F	ENST00000257290	NM_006206.4	890	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955640	55955640	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	100	426	0	ENST00000263923.4:c.3305G>A	p.Gly1102Asp	p.G1102D	ENST00000263923	NM_002253.2	1102	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1260701	1260701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	82	325	0	ENST00000310581.5:c.2858C>T	p.Ser953Phe	p.S953F	ENST00000310581	NM_198253.2	953	tCc/tTc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591262	67591262	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	121	341	0	ENST00000274335.5:c.1760A>T	p.Lys587Ile	p.K587I	ENST00000274335		587	aAa/aTa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149437127	149437127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	102	413	0	ENST00000286301.3:c.2161G>A	p.Asp721Asn	p.D721N	ENST00000286301	NM_005211.3	721	Gac/Aac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099499	157099499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	104	276	1	ENST00000346085.5:c.436G>A	p.Gly146Ser	p.G146S	ENST00000346085	NM_020732.3	146	Ggc/Agc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836345	151836345	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	98	208	0	ENST00000262189.6:c.14461-1G>A		p.X4821_splice	ENST00000262189	NM_170606.2	4821																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151882713	151882713	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	55	113	0	ENST00000262189.6:c.5012G>A	p.Trp1671Ter	p.W1671*	ENST00000262189	NM_170606.2	1671	tGg/tAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884347	151884347	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	91	334	1	ENST00000262189.6:c.5008G>A	p.Asp1670Asn	p.D1670N	ENST00000262189	NM_170606.2	1670	Gat/Aat																																																																														
TCEB1	6921	MSKCC	GRCh37	8	74858992	74858992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	30	86	0	ENST00000284811.8:c.212C>T	p.Ser71Leu	p.S71L	ENST00000284811		71	tCg/tTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518163	8518163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	125	397	0	ENST00000356435.5:c.1228A>G	p.Thr410Ala	p.T410A	ENST00000356435		410	Aca/Gca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528722	8528722	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	135	395	0	ENST00000356435.5:c.410T>C	p.Val137Ala	p.V137A	ENST00000356435		137	gTt/gCt																																																																														
SYK	6850	MSKCC	GRCh37	9	93606539	93606539	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	91	293	0	ENST00000375746.1:c.359T>C	p.Phe120Ser	p.F120S	ENST00000375746	NM_001174167.1	120	tTt/tCt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395134	139395134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	69	371	0	ENST00000277541.6:c.5804C>T	p.Ala1935Val	p.A1935V	ENST00000277541	NM_017617.3	1935	gCc/gTc																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154784	2154784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	125	522	0	ENST00000434045.2:c.437C>T	p.Ser146Phe	p.S146F	ENST00000434045	NM_001127598.1	146	tCc/tTc																																																																														
ATM	472	MSKCC	GRCh37	11	108196887	108196887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	88	350	0	ENST00000278616.4:c.6910G>A	p.Glu2304Lys	p.E2304K	ENST00000278616	NM_000051.3	2304	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342518	118342518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	141	507	0	ENST00000534358.1:c.644C>T	p.Ser215Phe	p.S215F	ENST00000534358	NM_005933.3	215	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420493	49420493	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	62	265	0	ENST00000301067.7:c.15256C>T	p.Arg5086Ter	p.R5086*	ENST00000301067	NM_003482.3	5086	Cga/Tga																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813350	102813350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	99	416	0	ENST00000307046.8:c.339G>T	p.Lys113Asn	p.K113N	ENST00000307046	NM_001111285.1	113	aaG/aaT																																																																														
POLE	5426	MSKCC	GRCh37	12	133226445	133226445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	110	337	1	ENST00000320574.5:c.3613C>T	p.Pro1205Ser	p.P1205S	ENST00000320574	NM_006231.2	1205	Ccg/Tcg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347954	347954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	71	429	0	ENST00000262320.3:c.1552C>T	p.Pro518Ser	p.P518S	ENST00000262320	NM_003502.3	518	Ccc/Tcc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020568	14020568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	84	412	1	ENST00000311895.7:c.539G>A	p.Arg180Lys	p.R180K	ENST00000311895	NM_005236.2	180	aGa/aAa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7983140	7983140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	150	399	0	ENST00000319144.4:c.874G>A	p.Asp292Asn	p.D292N	ENST00000319144	NM_001139.2	292	Gac/Aac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872772	37872772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	88	313	0	ENST00000269571.5:c.1651C>T	p.Pro551Ser	p.P551S	ENST00000269571		551	Ccc/Tcc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740453	58740453	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	145	698	0	ENST00000305921.3:c.1358C>G	p.Ser453Ter	p.S453*	ENST00000305921	NM_003620.3	453	tCa/tGa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1632393	1632393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	70	376	1	ENST00000344749.5:c.157C>T	p.Arg53Trp	p.R53W	ENST00000344749	NM_001136139.2	53	Cgg/Tgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2185874	2185874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	119	527	2	ENST00000398665.3:c.146C>T	p.Pro49Leu	p.P49L	ENST00000398665	NM_032482.2	49	cCg/cTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600434	10600434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	68	459	3	ENST00000171111.5:c.1421C>T	p.Ala474Val	p.A474V	ENST00000171111	NM_203500.1	474	gCc/gTc																																																																														
NF2	4771	MSKCC	GRCh37	22	30077558	30077558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	62	372	0	ENST00000338641.4:c.1705G>A	p.Gly569Ser	p.G569S	ENST00000338641	NM_000268.3	569	Ggt/Agt																																																																														
EP300	2033	MSKCC	GRCh37	22	41568555	41568555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	148	466	0	ENST00000263253.7:c.4505C>T	p.Pro1502Leu	p.P1502L	ENST00000263253	NM_001429.3	1502	cCt/cTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468040	120468042	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	151	490	0	ENST00000256646.2:c.4397_4399del	p.Cys1466del	p.C1466del	ENST00000256646	NM_024408.3	1466	tGCTcc/tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442494	49442494	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	128	394	0	ENST00000301067.7:c.4079del	p.Met1360SerfsTer16	p.M1360Sfs*16	ENST00000301067	NM_003482.3	1360	aTg/ag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400312	139400313	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	19	72	0	ENST00000277541.6:c.4035_4036del	p.Cys1345Ter	p.C1345*	ENST00000277541	NM_017617.3	1345	tgTGag/tgag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965188	25965189	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	74	318	0	ENST00000435504.4:c.4017_4018delinsAA	p.Met1339_Asp1340delinsIleAsn	p.M1339_D1340delinsIN	ENST00000435504		1339	atGGac/atAAac																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198288569	198288570	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1280	82	456	0	ENST00000335508.6:c.157_158delinsAA	p.Gly53Lys	p.G53K	ENST00000335508	NM_012433.2	53	GGa/AAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195699	123195700	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0007277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	250	326	1	ENST00000218089.9:c.1613_1614delinsAT	p.Pro538His	p.P538H	ENST00000218089	NM_001042749.1	538	cCC/cAT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0007280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	94	287	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	192	293	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	132	192	0				ENST00000310581	NM_198253.2																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	240	389	1	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	179	236	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911593	114911593	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	620	980	0	ENST00000543371.1:c.1111G>C	p.Glu371Gln	p.E371Q	ENST00000543371	NM_001198531.1	371	Gag/Cag																																																																														
PAK1	5058	MSKCC	GRCh37	11	77043802	77043802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	407	664	0	ENST00000356341.3:c.1524G>C	p.Lys508Asn	p.K508N	ENST00000356341	NM_002576.4	508	aaG/aaC																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779811	135779811	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	360	445	0	ENST00000298552.3:c.2028G>A	p.Trp676Ter	p.W676*	ENST00000298552	NM_001162426.1	676	tgG/tgA																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894839	101894840	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGA			P-0007285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	218	392	0	ENST00000374994.4:c.393_396dup	p.Pro133TrpfsTer30	p.P133Wfs*30	ENST00000374994	NM_004612.2	131	gct/gcTGGAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373832	118373833	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TA			P-0007285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	234	323	0	ENST00000534358.1:c.7225_7226delinsTA	p.Gly2409Ter	p.G2409*	ENST00000534358	NM_005933.3	2409	GGa/TAa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	72	508	0	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	30	234	0				ENST00000310581	NM_198253.2																																																																																
VHL	7428	MSKCC	GRCh37	3	10188252	10188252	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	92	603	0	ENST00000256474.2:c.397delA	p.Thr133LeufsTer26	p.T133Lfs*26	ENST00000256474	NM_000551.3	132	cAa/ca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	83	469	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	45	334	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	194	220	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0007517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	1035	541	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
INSR	3643	MSKCC	GRCh37	19	7128865	7128865	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0007517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	216	420	0	ENST00000302850.5:c.2943G>C	p.Lys981Asn	p.K981N	ENST00000302850	NM_000208.2	981	aaG/aaC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426015	49426015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	480	425	0	ENST00000301067.7:c.12473C>T	p.Pro4158Leu	p.P4158L	ENST00000301067	NM_003482.3	4158	cCc/cTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346771	89346771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	474	416	1	ENST00000301030.4:c.6179C>T	p.Ser2060Phe	p.S2060F	ENST00000301030	NM_001256183.1	2060	tCc/tTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243029	41243029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	515	535	0	ENST00000357654.3:c.4117G>A	p.Glu1373Lys	p.E1373K	ENST00000357654	NM_007294.3	1373	Gag/Aag																																																																														
ATM	472	MSKCC	GRCh37	11	108123566	108123567	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0007517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	186	460	0	ENST00000278616.4:c.1827_1828del	p.Lys610AsnfsTer11	p.K610Nfs*11	ENST00000278616	NM_000051.3	609	GAg/g																																																																														
ATM	472	MSKCC	GRCh37	11	108158372	108158374	+	inframe_deletion	In_Frame_Del	DEL	TTA	TTA	-			P-0007517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	270	465	0	ENST00000278616.4:c.4041_4043del	p.Leu1348del	p.L1348del	ENST00000278616	NM_000051.3	1347	TTA/-																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0007525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	97	263	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	57	313	1	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060594	38060618	+	frameshift_variant	Frame_Shift_Del	DEL	GGAATACACACCTTGGTAGTACGCC	GGAATACACACCTTGGTAGTACGCC	-			P-0007525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	44	378	0	ENST00000250448.2:c.1371_1395del	p.Ala458AspfsTer4	p.A458Dfs*4	ENST00000250448	NM_004496.3	457	ccGGCGTACTACCAAGGTGTGTATTCC/cc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597494	52597497	+	frameshift_variant	Frame_Shift_Del	DEL	AGGA	AGGA	-			P-0007525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	16	234	0	ENST00000394830.3:c.3813_3816del	p.Pro1272ArgfsTer15	p.P1272Rfs*15	ENST00000394830	NM_018313.4	1271	gtTCCT/gt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52595775	52595781	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CTATTTA	CTATTTA	-			P-0007525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	30	303	0	ENST00000394830.3:c.4132+2_4132+8del		p.X1378_splice	ENST00000394830	NM_018313.4	1378																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0007528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	144	517	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	68	237	0				ENST00000310581	NM_198253.2																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53223427	53223427	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	140	575	0	ENST00000375401.3:c.3932T>G	p.Leu1311Arg	p.L1311R	ENST00000375401	NM_004187.3	1311	cTc/cGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	52	220	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	500	659	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857284	9857284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	147	493	0	ENST00000330684.3:c.4117G>A	p.Asp1373Asn	p.D1373N	ENST00000330684	NM_001134407.1	1373	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	146	407	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	146	407	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980844	40980844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	119	456	0	ENST00000373198.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000373198	NM_133170.3	548	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514563	41514563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	97	324	0	ENST00000373198.4:c.98C>T	p.Ser33Phe	p.S33F	ENST00000373198	NM_133170.3	33	tCc/tTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789685	3789685	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	148	487	0	ENST00000262367.5:c.4174C>T	p.Arg1392Ter	p.R1392*	ENST00000262367	NM_004380.2	1392	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11319334	11319334	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	176	462	0	ENST00000361445.4:c.133C>T	p.Gln45Ter	p.Q45*	ENST00000361445	NM_004958.3	45	Cag/Tag																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166500	118166500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	137	384	0	ENST00000369448.3:c.1010C>T	p.Ala337Val	p.A337V	ENST00000369448	NM_017709.3	337	gCc/gTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458828	120458828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	129	405	0	ENST00000256646.2:c.6517C>T	p.Pro2173Ser	p.P2173S	ENST00000256646	NM_024408.3	2173	Cct/Tct																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120509023	120509023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	169	449	0	ENST00000256646.2:c.1543C>T	p.Arg515Cys	p.R515C	ENST00000256646	NM_024408.3	515	Cgt/Tgt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982427	25982427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	159	504	0	ENST00000435504.4:c.863A>G	p.Asn288Ser	p.N288S	ENST00000435504		288	aAc/aGc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266711	198266711	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	128	387	0	ENST00000335508.6:c.2221A>T	p.Lys741Ter	p.K741*	ENST00000335508	NM_012433.2	741	Aag/Tag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49939998	49939998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1359	216	794	1	ENST00000296474.3:c.1045G>A	p.Val349Ile	p.V349I	ENST00000296474	NM_002447.2	349	Gtc/Atc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670282	134670282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	126	438	0	ENST00000398015.3:c.193G>A	p.Glu65Lys	p.E65K	ENST00000398015	NM_004441.4	65	Gag/Aag																																																																														
TP63	8626	MSKCC	GRCh37	3	189526316	189526316	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	40	202	0	ENST00000264731.3:c.579+1G>A		p.X193_splice	ENST00000264731	NM_003722.4	193																																																																															
TP63	8626	MSKCC	GRCh37	3	189607246	189607246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	55	511	0	ENST00000264731.3:c.1625C>T	p.Pro542Leu	p.P542L	ENST00000264731	NM_003722.4	542	cCg/cTg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144683	55144683	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	52	350	1	ENST00000257290.5:c.2156+1G>A		p.X719_splice	ENST00000257290	NM_006206.4	719																																																																															
TERT	7015	MSKCC	GRCh37	5	1293431	1293431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	77	239	0	ENST00000310581.5:c.1570C>T	p.Pro524Ser	p.P524S	ENST00000310581	NM_198253.2	524	Cca/Tca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38966798	38966798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	138	453	0	ENST00000357387.3:c.1244G>A	p.Ser415Asn	p.S415N	ENST00000357387	NM_152756.3	415	aGt/aAt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86658378	86658378	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	52	364	0	ENST00000274376.6:c.1343A>G	p.Gln448Arg	p.Q448R	ENST00000274376	NM_002890.2	448	cAa/cGa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674234	86674234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	104	328	0	ENST00000274376.6:c.2366G>C	p.Arg789Pro	p.R789P	ENST00000274376	NM_002890.2	789	cGa/cCa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651937	36651937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	80	286	1	ENST00000244741.5:c.59G>A	p.Arg20His	p.R20H	ENST00000244741	NM_000389.4	20	cGc/cAc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946448	2946448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	117	458	0	ENST00000396946.4:c.3289G>A	p.Glu1097Lys	p.E1097K	ENST00000396946	NM_032415.4	1097	Gag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116397737	116397737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	147	591	0	ENST00000397752.3:c.2011G>A	p.Gly671Ser	p.G671S	ENST00000397752	NM_000245.2	671	Ggt/Agt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148524338	148524338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	139	373	0	ENST00000320356.2:c.646C>T	p.Arg216Trp	p.R216W	ENST00000320356	NM_004456.4	216	Cgg/Tgg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737690	145737690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	60	337	0	ENST00000428558.2:c.3073G>A	p.Gly1025Arg	p.G1025R	ENST00000428558	NM_004260.3	1025	Ggg/Agg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485252	8485252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	247	539	0	ENST00000356435.5:c.3128A>G	p.Asn1043Ser	p.N1043S	ENST00000356435		1043	aAt/aGt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244913	123244913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	138	557	0	ENST00000358487.5:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000358487	NM_000141.4	731	Gaa/Aaa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201933	102201933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1526	1726	865	2	ENST00000263464.3:c.1285G>A	p.Glu429Lys	p.E429K	ENST00000263464	NM_001165.4	429	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374387	118374387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	133	433	0	ENST00000534358.1:c.7780C>T	p.Leu2594Phe	p.L2594F	ENST00000534358	NM_005933.3	2594	Ctt/Ttt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864682	57864682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	391	865	0	ENST00000228682.2:c.2159C>T	p.Pro720Leu	p.P720L	ENST00000228682	NM_005269.2	720	cCc/cTc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111855978	111855978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	312	584	0	ENST00000341259.2:c.29C>T	p.Ser10Leu	p.S10L	ENST00000341259	NM_005475.2	10	tCg/tTg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924327	112924327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	241	566	0	ENST00000351677.2:c.1273G>A	p.Asp425Asn	p.D425N	ENST00000351677	NM_002834.3	425	Gac/Aac																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549055	21549055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	95	300	0	ENST00000382592.4:c.3221C>T	p.Ser1074Phe	p.S1074F	ENST00000382592	NM_014572.2	1074	tCt/tTt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527880	103527880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	75	451	0	ENST00000355739.4:c.3188C>T	p.Thr1063Ile	p.T1063I	ENST00000355739	NM_000123.3	1063	aCc/aTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437740	110437740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	146	531	2	ENST00000375856.3:c.661C>A	p.Leu221Met	p.L221M	ENST00000375856	NM_003749.2	221	Ctg/Atg																																																																														
MGA	23269	MSKCC	GRCh37	15	41988838	41988838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1623	340	1035	0	ENST00000219905.7:c.1630C>T	p.Pro544Ser	p.P544S	ENST00000219905	NM_001164273.1	544	Ccc/Tcc																																																																														
MGA	23269	MSKCC	GRCh37	15	42003035	42003035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1657	171	1011	0	ENST00000219905.7:c.2572C>T	p.Pro858Ser	p.P858S	ENST00000219905	NM_001164273.1	858	Ccc/Tcc																																																																														
MGA	23269	MSKCC	GRCh37	15	42003036	42003036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1664	173	1011	0	ENST00000219905.7:c.2573C>T	p.Pro858Leu	p.P858L	ENST00000219905	NM_001164273.1	858	cCc/cTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42003340	42003340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1454	304	863	0	ENST00000219905.7:c.2877G>T	p.Leu959Phe	p.L959F	ENST00000219905	NM_001164273.1	959	ttG/ttT																																																																														
BLM	641	MSKCC	GRCh37	15	91328178	91328178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	100	469	0	ENST00000355112.3:c.2690C>T	p.Ser897Phe	p.S897F	ENST00000355112	NM_000057.2	897	tCc/tTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3831253	3831253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	114	443	0	ENST00000262367.5:c.1628C>T	p.Pro543Leu	p.P543L	ENST00000262367	NM_004380.2	543	cCa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934887	9934887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	167	591	2	ENST00000330684.3:c.1403C>T	p.Ser468Phe	p.S468F	ENST00000330684	NM_001134407.1	468	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845640	72845640	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354034		P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1337	165	845	0	ENST00000268489.5:c.3700G>A	p.Asp1234Asn	p.D1234N	ENST00000268489	NM_006885.3	1234	Gat/Aat																																																																														
NF1	4763	MSKCC	GRCh37	17	29554566	29554566	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	136	416	0	ENST00000358273.4:c.2351G>A	p.Trp784Ter	p.W784*	ENST00000358273	NM_001042492.2	784	tGg/tAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439925	56439925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	79	230	0	ENST00000407977.2:c.667C>T	p.Arg223Cys	p.R223C	ENST00000407977		223	Cgc/Tgc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58678020	58678020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	98	365	1	ENST00000305921.3:c.245C>T	p.Ala82Val	p.A82V	ENST00000305921	NM_003620.3	82	gCc/gTc																																																																														
YES1	7525	MSKCC	GRCh37	18	751751	751751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	128	400	0	ENST00000314574.4:c.325G>A	p.Asp109Asn	p.D109N	ENST00000314574	NM_005433.3	109	Gac/Aac																																																																														
CIC	23152	MSKCC	GRCh37	19	42799135	42799135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	73	334	0	ENST00000575354.2:c.4619C>T	p.Pro1540Leu	p.P1540L	ENST00000575354	NM_015125.3	1540	cCc/cTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50920463	50920463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	120	518	0	ENST00000440232.2:c.3155C>T	p.Ser1052Leu	p.S1052L	ENST00000440232	NM_002691.3	1052	tCg/tTg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624810	9624810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	83	349	0	ENST00000353224.5:c.167C>T	p.Pro56Leu	p.P56L	ENST00000353224	NM_177990.2	56	cCt/cTt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624811	9624811	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	83	353	1	ENST00000353224.5:c.166C>A	p.Pro56Thr	p.P56T	ENST00000353224	NM_177990.2	56	Cct/Act																																																																														
TOP1	7150	MSKCC	GRCh37	20	39690106	39690106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	134	286	1	ENST00000361337.2:c.131G>A	p.Arg44Gln	p.R44Q	ENST00000361337	NM_003286.2	44	cGg/cAg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279780	46279780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	93	406	0	ENST00000371998.3:c.3706C>T	p.His1236Tyr	p.H1236Y	ENST00000371998		1236	Cat/Tat																																																																														
EP300	2033	MSKCC	GRCh37	22	41545060	41545060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	193	520	0	ENST00000263253.7:c.2260C>T	p.Arg754Cys	p.R754C	ENST00000263253	NM_001429.3	754	Cgt/Tgt																																																																														
YES1	7525	MSKCC	GRCh37	18	756613	756614	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0007544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	93	521	1	ENST00000314574.4:c.214_215delinsAA	p.Gly72Lys	p.G72K	ENST00000314574	NM_005433.3	72	GGa/AAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254623	16254623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	487	402	0	ENST00000375759.3:c.1888C>T	p.Arg630Cys	p.R630C	ENST00000375759	NM_015001.2	630	Cgt/Tgt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65311195	65311195	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			35	330	264	0	ENST00000342505.4:c.2115+1G>T		p.X705_splice	ENST00000342505	NM_002227.2	705																																																																															
ALK	238	MSKCC	GRCh37	2	29443616	29443616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	350	266	0	ENST00000389048.3:c.3601G>A	p.Gly1201Arg	p.G1201R	ENST00000389048	NM_004304.4	1201	Ggg/Agg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582446	119582446	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	136	107	0	ENST00000316626.5:c.955C>T	p.Arg319Ter	p.R319*	ENST00000316626		319	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142178211	142178211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	205	184	0	ENST00000350721.4:c.7207G>A	p.Gly2403Arg	p.G2403R	ENST00000350721	NM_001184.3	2403	Gga/Aga																																																																														
TP63	8626	MSKCC	GRCh37	3	189455608	189455608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	355	287	1	ENST00000264731.3:c.142G>A	p.Glu48Lys	p.E48K	ENST00000264731	NM_003722.4	48	Gaa/Aaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66468018	66468018	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			15	149	139	0	ENST00000273854.3:c.251A>G	p.Glu84Gly	p.E84G	ENST00000273854	NM_004439.5	84	gAa/gGa																																																																														
TET2	54790	MSKCC	GRCh37	4	106156829	106156829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	316	257	0	ENST00000380013.4:c.1730C>T	p.Ser577Phe	p.S577F	ENST00000380013	NM_001127208.2	577	tCc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244235	153244235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	338	295	1	ENST00000281708.4:c.1922C>T	p.Ser641Leu	p.S641L	ENST00000281708	NM_033632.3	641	tCa/tTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510243	187510243	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			25	224	297	0	ENST00000441802.2:c.13270T>A	p.Tyr4424Asn	p.Y4424N	ENST00000441802	NM_005245.3	4424	Tat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	142	204	0				ENST00000310581	NM_198253.2																																																																																
FLT4	2324	MSKCC	GRCh37	5	180050945	180050945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	405	270	0	ENST00000261937.6:c.1538G>T	p.Gly513Val	p.G513V	ENST00000261937	NM_182925.4	513	gGa/gTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725456	117725456	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	323	310	0	ENST00000368508.3:c.425G>A	p.Trp142Ter	p.W142*	ENST00000368508	NM_002944.2	142	tGg/tAg																																																																														
HGF	3082	MSKCC	GRCh37	7	81355222	81355222	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	269	245	0	ENST00000222390.5:c.1152T>A	p.Asp384Glu	p.D384E	ENST00000222390	NM_000601.4	384	gaT/gaA																																																																														
RET	5979	MSKCC	GRCh37	10	43596032	43596032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			23	293	255	0	ENST00000355710.3:c.199C>T	p.Arg67Cys	p.R67C	ENST00000355710	NM_020975.4	67	Cgc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653814	89653815	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			29	321	212	0	ENST00000371953.3:c.112_113delinsTT	p.Pro38Phe	p.P38F	ENST00000371953	NM_000314.4	38	CCt/TTt																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	800	259	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432121	121432121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			18	593	276	0	ENST00000257555.6:c.868C>T	p.Pro290Ser	p.P290S	ENST00000257555		290	Ccc/Tcc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68934907	68934907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	448	315	0	ENST00000487270.1:c.976C>T	p.Pro326Ser	p.P326S	ENST00000487270	NM_133509.3	326	Cct/Tct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827217	72827217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	535	547	2	ENST00000268489.5:c.9364C>T	p.Pro3122Ser	p.P3122S	ENST00000268489	NM_006885.3	3122	Cct/Tct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993798	72993798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	403	449	4	ENST00000268489.5:c.247G>A	p.Glu83Lys	p.E83K	ENST00000268489	NM_006885.3	83	Gaa/Aaa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032480	12032480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	188	208	0	ENST00000353533.5:c.916C>T	p.Pro306Ser	p.P306S	ENST00000353533	NM_003010.3	306	Cct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	376	292	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354156	15354157	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	161	80	0	ENST00000263377.2:c.2723_2724delinsTT	p.Pro908Leu	p.P908L	ENST00000263377	NM_058243.2	908	cCC/cTT																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366366	15366366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	194	167	0	ENST00000263377.2:c.1789C>T	p.Pro597Ser	p.P597S	ENST00000263377	NM_058243.2	597	Ccc/Tcc																																																																														
AKT2	208	MSKCC	GRCh37	19	40741870	40741870	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144444132		P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	319	270	0	ENST00000392038.2:c.1102C>T	p.Arg368Cys	p.R368C	ENST00000392038	NM_001626.4	368	Cgc/Tgc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538374	9538374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	252	195	0	ENST00000353224.5:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000353224	NM_177990.2	542	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023493	31023493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	593	238	0	ENST00000375687.4:c.2978G>A	p.Ser993Asn	p.S993N	ENST00000375687	NM_015338.5	993	aGt/aAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408912	41408912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	320	278	0	ENST00000373198.4:c.514G>A	p.Gly172Ser	p.G172S	ENST00000373198	NM_133170.3	172	Ggt/Agt																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961474	54961474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	180	147	0	ENST00000312783.6:c.158C>T	p.Ser53Phe	p.S53F	ENST00000312783	NM_198436.1	53	tCt/tTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76776936	76776936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	481	496	0	ENST00000373344.5:c.7016C>A	p.Thr2339Lys	p.T2339K	ENST00000373344	NM_000489.3	2339	aCa/aAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76907828	76907828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	205	200	0	ENST00000373344.5:c.4333G>A	p.Glu1445Lys	p.E1445K	ENST00000373344	NM_000489.3	1445	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971135	21971226	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAAT	GGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAAT	-			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	54	82	0	ENST00000304494.5:c.151-19_223del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971135	21971226	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAAT	GGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAAT	-			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	54	82	0	ENST00000304494.5:c.151-19_223del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971135	21971226	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAAT	GGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAAT	-			P-0007561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	54	82	0	ENST00000304494.5:c.151-19_223del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	103	213	0				ENST00000310581	NM_198253.2																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	470	453	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
CASP8	841	MSKCC	GRCh37	2	202151270	202151270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	87	666	0	ENST00000358485.4:c.1570C>T	p.Gln524Ter	p.Q524*	ENST00000358485	NM_001080125.1	524	Cag/Tag																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519502	137519502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	328	355	0	ENST00000367739.4:c.1136C>T	p.Ser379Phe	p.S379F	ENST00000367739	NM_000416.2	379	tCt/tTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486121	8486121	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	260	471	0	ENST00000356435.5:c.2696A>C	p.Asn899Thr	p.N899T	ENST00000356435		899	aAc/aCc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778060	135778060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	343	487	0	ENST00000298552.3:c.2323C>A	p.Leu775Ile	p.L775I	ENST00000298552	NM_001162426.1	775	Ctc/Atc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343460	118343460	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	216	294	0	ENST00000534358.1:c.1586G>C	p.Arg529Thr	p.R529T	ENST00000534358	NM_005933.3	529	aGa/aCa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343477	118343477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	218	292	0	ENST00000534358.1:c.1603G>C	p.Glu535Gln	p.E535Q	ENST00000534358	NM_005933.3	535	Gag/Cag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343586	118343586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	228	304	0	ENST00000534358.1:c.1712C>A	p.Pro571Gln	p.P571Q	ENST00000534358	NM_005933.3	571	cCa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344204	118344204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	259	313	0	ENST00000534358.1:c.2330C>G	p.Ser777Cys	p.S777C	ENST00000534358	NM_005933.3	777	tCt/tGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344230	118344230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	197	258	0	ENST00000534358.1:c.2356C>A	p.Pro786Thr	p.P786T	ENST00000534358	NM_005933.3	786	Cct/Act																																																																														
RB1	5925	MSKCC	GRCh37	13	48881414	48881414	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	211	258	0	ENST00000267163.4:c.138-2A>G		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786766	3786766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	351	483	0	ENST00000262367.5:c.4445A>G	p.Tyr1482Cys	p.Y1482C	ENST00000262367	NM_004380.2	1482	tAc/tGc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369458	40369458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	210	873	0	ENST00000293328.3:c.1194C>G	p.Asn398Lys	p.N398K	ENST00000293328	NM_012448.3	398	aaC/aaG																																																																														
CASP8	841	MSKCC	GRCh37	2	202149808	202149812	+	stop_gained	Nonsense_Mutation	ONP	CAGGC	CAGGC	TAGGT			P-0007656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	42	380	0	ENST00000358485.4:c.1249_1253delinsTAGGT	p.Gln417_Ala418delinsTer	p.Q417_A418delins*	ENST00000358485	NM_001080125.1	417	CAGGCt/TAGGTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	451	356	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	212	232	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	849	421	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485397	57485397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	145	327	1	ENST00000371085.3:c.979G>A	p.Glu327Lys	p.E327K	ENST00000371085	NM_000516.4	327	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	398	483	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261577	16261577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	338	318	0	ENST00000375759.3:c.8842G>T	p.Val2948Phe	p.V2948F	ENST00000375759	NM_015001.2	2948	Gtc/Ttc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330586	65330586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	221	623	0	ENST00000342505.4:c.1060G>A	p.Glu354Lys	p.E354K	ENST00000342505	NM_002227.2	354	Gag/Aag																																																																														
ATR	545	MSKCC	GRCh37	3	142241667	142241667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	155	380	0	ENST00000350721.4:c.4169C>T	p.Ser1390Leu	p.S1390L	ENST00000350721	NM_001184.3	1390	tCa/tTa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046343	180046343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	95	282	0	ENST00000261937.6:c.2671C>A	p.Arg891Ser	p.R891S	ENST00000261937	NM_182925.4	891	Cgc/Agc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6029578	6029578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	286	480	0	ENST00000265849.7:c.997G>A	p.Asp333Asn	p.D333N	ENST00000265849	NM_000535.5	333	Gat/Aat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069037	5069037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	171	391	0	ENST00000381652.3:c.1342G>A	p.Glu448Lys	p.E448K	ENST00000381652	NM_004972.3	448	Gaa/Aaa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571883	64571883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1354	647	891	2	ENST00000337652.1:c.1771C>T	p.Gln591Ter	p.Q591*	ENST00000337652	NM_130803.2	591	Cag/Tag																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202594	67202594	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	302	463	1	ENST00000312629.5:c.1403C>G	p.Ser468Ter	p.S468*	ENST00000312629	NM_003952.2	468	tCa/tGa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574226	95574226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	326	363	1	ENST00000343455.3:c.2641C>A	p.Leu881Ile	p.L881I	ENST00000343455	NM_177438.2	881	Ctt/Att																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138300	2138300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	412	413	1	ENST00000219476.3:c.5233C>T	p.Arg1745Cys	p.R1745C	ENST00000219476	NM_000548.3	1745	Cgc/Tgc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868636	37868636	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	930	434	0	ENST00000269571.5:c.1083C>G	p.Ile361Met	p.I361M	ENST00000269571		361	atC/atG																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369481	40369481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	1267	664	0	ENST00000293328.3:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000293328	NM_012448.3	391	Gat/Aat																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52719895	52719895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	809	456	0	ENST00000322088.6:c.1107C>A	p.Phe369Leu	p.F369L	ENST00000322088	NM_014225.5	369	ttC/ttA																																																																														
EP300	2033	MSKCC	GRCh37	22	41568656	41568656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	288	352	1	ENST00000263253.7:c.4606G>A	p.Glu1536Lys	p.E1536K	ENST00000263253	NM_001429.3	1536	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41568668	41568668	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0007658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	230	291	0	ENST00000263253.7:c.4617+1G>C		p.X1539_splice	ENST00000263253	NM_001429.3	1539																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	29	236	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	536	890	1	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	373	536	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117759	115117759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	360	504	0	ENST00000257566.3:c.676G>A	p.Asp226Asn	p.D226N	ENST00000257566	NM_016569.3	226	Gat/Aat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390342	118390342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	304	439	0	ENST00000534358.1:c.11156G>A	p.Gly3719Asp	p.G3719D	ENST00000534358	NM_005933.3	3719	gGt/gAt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118812	115118812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	367	468	0	ENST00000257566.3:c.529G>A	p.Asp177Asn	p.D177N	ENST00000257566	NM_016569.3	177	Gac/Aac																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437385	110437385	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	32	76	0	ENST00000375856.3:c.1016T>G	p.Val339Gly	p.V339G	ENST00000375856	NM_003749.2	339	gTg/gGg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949967	44949967	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	328	242	0	ENST00000377967.4:c.3737-1G>T		p.X1246_splice	ENST00000377967	NM_021140.2	1246																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	INS	-	-	GGGGCTGGGCTGGGAGGGCCCGGAA			P-0007682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	33	232	0				ENST00000310581	NM_198253.2																																																																																
CEBPA	1050	MSKCC	GRCh37	19	33792738	33792739	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	80	65	0	ENST00000498907.2:c.582dup	p.His195AlafsTer126	p.H195Afs*126	ENST00000498907	NM_004364.3	194	-/G																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3794941	3794944	+	frameshift_variant	Frame_Shift_Del	DEL	CAAG	CAAG	-			P-0007682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	328	488	0	ENST00000262367.5:c.3933_3936del	p.Cys1311Ter	p.C1311*	ENST00000262367	NM_004380.2	1311	tgCTTG/tg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			362	101	268	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			766	38	366	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			659	142	461	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100081	157100092	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGGCGGCC	GCGGCGGCGGCC	-			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			71	21	41	0	ENST00000346085.5:c.1029_1040del	p.Ala347_Ala350del	p.A347_A350del	ENST00000346085	NM_020732.3	340	GCGGCGGCGGCC/-																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			772	235	540	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681461	30681461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			687	142	458	0	ENST00000376406.3:c.551C>T	p.Ser184Leu	p.S184L	ENST00000376406	NM_014641.2	184	tCa/tTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527328	157527328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			481	67	329	0	ENST00000346085.5:c.5053G>A	p.Glu1685Lys	p.E1685K	ENST00000346085	NM_020732.3	1685	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41547874	41547874	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			871	55	464	0	ENST00000263253.7:c.2855C>G	p.Ser952Ter	p.S952*	ENST00000263253	NM_001429.3	952	tCa/tGa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907194	32907194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			848	69	430	0	ENST00000380152.3:c.1579C>G	p.Pro527Ala	p.P527A	ENST00000380152		527	Cca/Gca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247369	153247369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			462	111	231	0	ENST00000281708.4:c.1433C>T	p.Ser478Phe	p.S478F	ENST00000281708	NM_033632.3	478	tCt/tTt																																																																														
RYBP	23429	MSKCC	GRCh37	3	72428532	72428532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			676	115	398	0	ENST00000477973.2:c.470C>T	p.Gln158Ter	p.Q158*	ENST00000477973	NM_012234.5	158	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151919142	151919142	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			499	109	325	0	ENST00000262189.6:c.3443C>A	p.Ser1148Ter	p.S1148*	ENST00000262189	NM_170606.2	1148	tCa/tAa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482185	87482185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			593	114	451	0	ENST00000277120.3:c.1472A>G	p.Asp491Gly	p.D491G	ENST00000277120		491	gAt/gGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900894	3900894	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			700	171	564	0	ENST00000262367.5:c.202A>T	p.Lys68Ter	p.K68*	ENST00000262367	NM_004380.2	68	Aaa/Taa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39637883	39637883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			546	137	387	0	ENST00000262039.4:c.2300G>A	p.Gly767Asp	p.G767D	ENST00000262039	NM_002647.2	767	gGt/gAt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31368262	31368262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			538	127	333	0	ENST00000328111.2:c.133G>A	p.Glu45Lys	p.E45K	ENST00000328111	NM_006892.3	45	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41565505	41565505	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			569	156	347	0	ENST00000263253.7:c.4173-2A>G		p.X1391_splice	ENST00000263253	NM_001429.3	1391																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533500	63533526	+	inframe_deletion	In_Frame_Del	DEL	AGCAGTAATACTCGCTGCCCCCAGGGC	AGCAGTAATACTCGCTGCCCCCAGGGC	-			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			678	124	475	1	ENST00000307078.5:c.1628_1654del	p.Cys543_Cys551del	p.C543_C551del	ENST00000307078	NM_004655.3	543	tGCCCTGGGGGCAGCGAGTATTACTGCTac/tac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092709	27092721	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGGCCGCCAGGC	TAGGCCGCCAGGC	-			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			565	123	367	0	ENST00000324856.7:c.2733-1_2744del		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63852148	63852148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			609	54	326	0	ENST00000279873.7:c.2927del	p.Gly976GlufsTer6	p.G976Efs*6	ENST00000279873	NM_032199.2	976	Gga/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436408	49436408	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			833	47	439	0	ENST00000301067.7:c.5803C>G	p.Leu1935Val	p.L1935V	ENST00000301067	NM_003482.3	1935	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			539	63	312	1	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29095846	29095846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			831	76	556	0	ENST00000328354.6:c.988C>T	p.Gln330Ter	p.Q330*	ENST00000328354	NM_007194.3	330	Cag/Tag																																																																														
KDR	3791	MSKCC	GRCh37	4	55976584	55976584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			824	79	528	0	ENST00000263923.4:c.1241C>T	p.Ser414Phe	p.S414F	ENST00000263923	NM_002253.2	414	tCt/tTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244227	153244227	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			837	98	475	0	ENST00000281708.4:c.1930G>T	p.Gly644Ter	p.G644*	ENST00000281708	NM_033632.3	644	Gga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399456	139399456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007755-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			746	70	461	0	ENST00000277541.6:c.4687G>C	p.Glu1563Gln	p.E1563Q	ENST00000277541	NM_017617.3	1563	Gag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0007777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	203	338	0				ENST00000310581	NM_198253.2																																																																																
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	435	639	2	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588170	67588183	+	frameshift_variant	Frame_Shift_Del	DEL	TACTGGGGAGATAT	TACTGGGGAGATAT	G			P-0007777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	33	272	0	ENST00000274335.5:c.1000_1013delTACTGGGGAGATATinsG	p.Tyr334AlafsTer6	p.Y334Afs*6	ENST00000274335		334	TACTGGGGAGATATc/Gc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	153	395	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	32	163	0				ENST00000310581	NM_198253.2																																																																																
TET1	80312	MSKCC	GRCh37	10	70450939	70450939	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	109	256	5	ENST00000373644.4:c.5779T>G	p.Ser1927Ala	p.S1927A	ENST00000373644	NM_030625.2	1927	Tcc/Gcc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9787030	9787030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	391	524	0	ENST00000377346.4:c.3061G>A	p.Glu1021Lys	p.E1021K	ENST00000377346	NM_005026.3	1021	Gaa/Aaa																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551831	150551831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	96	139	0	ENST00000369026.2:c.176G>A	p.Gly59Glu	p.G59E	ENST00000369026	NM_021960.4	59	gGa/gAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972819	25972819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	382	613	0	ENST00000435504.4:c.1606C>T	p.Pro536Ser	p.P536S	ENST00000435504		536	Cca/Tca																																																																														
REL	5966	MSKCC	GRCh37	2	61149642	61149642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	127	140	0	ENST00000295025.8:c.1832C>T	p.Ser611Phe	p.S611F	ENST00000295025	NM_002908.2	611	tCc/tTc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61726011	61726011	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	380	411	0	ENST00000401558.2:c.628C>T	p.Gln210Ter	p.Q210*	ENST00000401558	NM_003400.3	210	Cag/Tag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99136602	99136602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	229	352	0	ENST00000074304.5:c.91G>A	p.Gly31Ser	p.G31S	ENST00000074304	NM_001134224.1	31	Ggc/Agc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248527	212248527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	360	668	0	ENST00000342788.4:c.3740T>C	p.Leu1247Pro	p.L1247P	ENST00000342788	NM_005235.2	1247	cTg/cCg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285309	212285309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	295	446	0	ENST00000342788.4:c.2992C>T	p.Pro998Ser	p.P998S	ENST00000342788	NM_005235.2	998	Cca/Tca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	334	437	1	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
RHOA	387	MSKCC	GRCh37	3	49412884	49412884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	517	673	2	ENST00000418115.1:c.139G>A	p.Glu47Lys	p.E47K	ENST00000418115	NM_001664.2	47	Gag/Aag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437161	52437161	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	320	476	0	ENST00000460680.1:c.1883C>A	p.Ser628Ter	p.S628*	ENST00000460680	NM_004656.3	628	tCa/tAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873104	134873104	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202048188		P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	252	358	0	ENST00000398015.3:c.1408C>T	p.Arg470Trp	p.R470W	ENST00000398015	NM_004441.4	470	Cgg/Tgg																																																																														
TP63	8626	MSKCC	GRCh37	3	189612146	189612146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	348	493	0	ENST00000264731.3:c.1898C>T	p.Thr633Ile	p.T633I	ENST00000264731	NM_003722.4	633	aCc/aTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	124	454	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	322	510	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249511	153249511	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	298	373	0	ENST00000281708.4:c.1267G>T	p.Gly423Ter	p.G423*	ENST00000281708	NM_033632.3	423	Gga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629322	187629322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	314	538	0	ENST00000441802.2:c.1660C>T	p.Leu554Phe	p.L554F	ENST00000441802	NM_005245.3	554	Ctt/Ttt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	145	266	1				ENST00000310581	NM_198253.2																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149512361	149512361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	231	386	0	ENST00000261799.4:c.1079C>T	p.Ser360Phe	p.S360F	ENST00000261799	NM_002609.3	360	tCc/tTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517504	176517504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	295	462	0	ENST00000292408.4:c.205G>A	p.Glu69Lys	p.E69K	ENST00000292408	NM_213647.1	69	Gag/Aag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673571	30673571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	543	874	0	ENST00000376406.3:c.3389C>T	p.Ser1130Phe	p.S1130F	ENST00000376406	NM_014641.2	1130	tCc/tTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188182	32188182	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	157	269	0	ENST00000375023.3:c.1159G>A	p.Gly387Arg	p.G387R	ENST00000375023	NM_004557.3	387	Gga/Aga																																																																														
CCND3	896	MSKCC	GRCh37	6	41903789	41903790	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	211	427	0	ENST00000372991.4:c.767_768delinsAA	p.Arg256Lys	p.R256K	ENST00000372991	NM_001760.3	256	aGG/aAA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120633	94120633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	454	956	1	ENST00000369303.4:c.418G>A	p.Glu140Lys	p.E140K	ENST00000369303	NM_004440.3	140	Gaa/Aaa																																																																														
RAC1	5879	MSKCC	GRCh37	7	6439797	6439797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	392	515	0	ENST00000356142.4:c.323C>T	p.Ser108Leu	p.S108L	ENST00000356142	NM_018890.3	108	tCa/tTa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515213	106515213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	320	421	0	ENST00000359195.3:c.2356C>T	p.Pro786Ser	p.P786S	ENST00000359195	NM_002649.2	786	Cca/Tca																																																																														
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913357		P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	325	439	2	ENST00000288602.6:c.1405G>A	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Aga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860668	151860668	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	345	553	1	ENST00000262189.6:c.9994T>A	p.Leu3332Ile	p.L3332I	ENST00000262189	NM_170606.2	3332	Tta/Ata																																																																														
RAD21	5885	MSKCC	GRCh37	8	117869692	117869692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	495	692	1	ENST00000297338.2:c.502C>T	p.Arg168Cys	p.R168C	ENST00000297338	NM_006265.2	168	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341925	8341925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	278	458	0	ENST00000356435.5:c.4715G>A	p.Arg1572Lys	p.R1572K	ENST00000356435		1572	aGa/aAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	90	109	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	90	109	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	89	107	0	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
ABL1	25	MSKCC	GRCh37	9	133759397	133759397	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	464	732	1	ENST00000318560.5:c.1720C>T	p.Arg574Ter	p.R574*	ENST00000318560	NM_005157.4	574	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390617	139390617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	388	649	1	ENST00000277541.6:c.7574C>T	p.Pro2525Leu	p.P2525L	ENST00000277541	NM_017617.3	2525	cCg/cTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391370	139391370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	251	417	1	ENST00000277541.6:c.6821C>T	p.Ser2274Phe	p.S2274F	ENST00000277541	NM_017617.3	2274	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396743	139396743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	200	312	0	ENST00000277541.6:c.5365G>C	p.Glu1789Gln	p.E1789Q	ENST00000277541	NM_017617.3	1789	Gag/Cag																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672067	88672068	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	71	159	0	ENST00000372037.3:c.601_602delinsTT	p.Pro201Leu	p.P201L	ENST00000372037	NM_004329.2	201	CCa/TTa																																																																														
SUFU	51684	MSKCC	GRCh37	10	104375057	104375057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	230	419	1	ENST00000369902.3:c.1055C>T	p.Ser352Phe	p.S352F	ENST00000369902	NM_016169.3	352	tCc/tTc																																																																														
ATM	472	MSKCC	GRCh37	11	108158421	108158421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	239	271	0	ENST00000278616.4:c.4088C>T	p.Thr1363Ile	p.T1363I	ENST00000278616	NM_000051.3	1363	aCt/aTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344314	118344314	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	146	184	1	ENST00000534358.1:c.2440C>T	p.Gln814Ter	p.Q814*	ENST00000534358	NM_005933.3	814	Cag/Tag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109942	115109942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	180	298	0	ENST00000257566.3:c.1936C>T	p.Pro646Ser	p.P646S	ENST00000257566	NM_016569.3	646	Ccg/Tcg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26974660	26974660	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	331	450	0	ENST00000381527.3:c.1004T>C	p.Phe335Ser	p.F335S	ENST00000381527	NM_001260.1	335	tTc/tCc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436941	110436941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	54	108	0	ENST00000375856.3:c.1460C>T	p.Ser487Phe	p.S487F	ENST00000375856	NM_003749.2	487	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858754	9858754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	225	337	0	ENST00000330684.3:c.2647C>T	p.Pro883Ser	p.P883S	ENST00000330684	NM_001134407.1	883	Cca/Tca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821176	72821176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	492	886	0	ENST00000268489.5:c.10999G>A	p.Asp3667Asn	p.D3667N	ENST00000268489	NM_006885.3	3667	Gat/Aat																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929529	81929529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	467	806	0	ENST00000359376.3:c.1190C>T	p.Ser397Leu	p.S397L	ENST00000359376	NM_002661.3	397	tCg/tTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29553539	29553540	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	AC			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	182	307	2	ENST00000358273.4:c.2088_2089delinsAC	p.Trp696_Asn697delinsTer	p.W696_N697delins*	ENST00000358273	NM_001042492.2	696	tgGAac/tgACac																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	488	688	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
RARA	5914	MSKCC	GRCh37	17	38511566	38511566	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	314	459	0	ENST00000254066.5:c.1064T>A	p.Leu355Gln	p.L355Q	ENST00000254066	NM_000964.3	355	cTg/cAg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243973	41243974	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	315	435	0	ENST00000357654.3:c.3574_3575delinsTT	p.Pro1192Phe	p.P1192F	ENST00000357654	NM_007294.3	1192	CCt/TTt																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73775182	73775182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	499	722	0	ENST00000254810.4:c.74C>T	p.Ala25Val	p.A25V	ENST00000254810	NM_005324.3	25	gCc/gTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5219368	5219369	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	317	471	3	ENST00000357368.4:c.3875_3876delinsTT	p.Ala1292Val	p.A1292V	ENST00000357368	NM_002850.3	1292	gCC/gTT																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257552	19257552	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	264	433	0	ENST00000162023.5:c.674C>T	p.Ser225Phe	p.S225F	ENST00000162023		225	tCc/tTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41573672	41573672	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144626200		P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	327	461	3	ENST00000263253.7:c.5957C>T	p.Pro1986Leu	p.P1986L	ENST00000263253	NM_001429.3	1986	cCg/cTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440923	52440950	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTAGTGGAGACCAAGACAAGGAATCAG	CCTAGTGGAGACCAAGACAAGGAATCAG	-			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	192	390	0	ENST00000460680.1:c.581-27_581del		p.X194_splice	ENST00000460680	NM_004656.3	194																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	256	361	2	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73352351	73352351	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	367	667	0	ENST00000377767.4:c.554del	p.Ile185LysfsTer14	p.I185Kfs*14	ENST00000377767	NM_014953.3	185	aTa/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	121	144	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	502	392	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	161	217	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	161	217	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	95	176	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	161	217	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120467939	120467939	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	59	401	0	ENST00000256646.2:c.4500C>G	p.Ser1500Arg	p.S1500R	ENST00000256646	NM_024408.3	1500	agC/agG																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113154	209113154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	236	372	0	ENST00000345146.2:c.353C>T	p.Pro118Leu	p.P118L	ENST00000345146	NM_005896.2	118	cCc/cTc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713796	30713796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	165	228	0	ENST00000359013.4:c.1196C>T	p.Pro399Leu	p.P399L	ENST00000359013	NM_001024847.2	399	cCc/cTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55561705	55561705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	177	215	0	ENST00000288135.5:c.95G>A	p.Gly32Glu	p.G32E	ENST00000288135	NM_000222.2	32	gGg/gAg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865269	57865269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	321	447	0	ENST00000228682.2:c.2746G>A	p.Glu916Lys	p.E916K	ENST00000228682	NM_005269.2	916	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005401	29005401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	94	363	0	ENST00000282397.4:c.860C>T	p.Ser287Phe	p.S287F	ENST00000282397	NM_002019.4	287	tCc/tTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281346	15281346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	109	192	0	ENST00000263388.2:c.4910C>T	p.Pro1637Leu	p.P1637L	ENST00000263388	NM_000435.2	1637	cCa/cTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	95	176	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	140	187	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	403	560	2	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	332	449	0	ENST00000269305.4:c.577C>A	p.His193Asn	p.H193N	ENST00000269305	NM_001126112.2	193	Cat/Aat																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651893	36651894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	231	274	0	ENST00000244741.5:c.19dup	p.Asp7GlyfsTer29	p.D7Gfs*29	ENST00000244741	NM_000389.4	5	-/G																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928858	49928858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	203	725	0	ENST00000296474.3:c.3508C>A	p.Leu1170Ile	p.L1170I	ENST00000296474	NM_002447.2	1170	Ctc/Atc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211137	55211137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	94	421	0	ENST00000275493.2:c.380C>A	p.Ala127Glu	p.A127E	ENST00000275493	NM_005228.3	127	gCa/gAa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2227045	2227045	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	125	121	0	ENST00000398665.3:c.4525C>A	p.His1509Asn	p.H1509N	ENST00000398665	NM_032482.2	1509	Cac/Aac																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31395599	31395599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1835	154	429	3	ENST00000328111.2:c.2452G>A	p.Val818Met	p.V818M	ENST00000328111	NM_006892.3	818	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	11	305	1				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751886972		P-0008062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	34	344	1	ENST00000373198.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000373198	NM_133170.3	413	gCg/gTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257776	16257776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	30	267	0	ENST00000375759.3:c.5041G>A	p.Glu1681Lys	p.E1681K	ENST00000375759	NM_015001.2	1681	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106158116	106158116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	44	482	0	ENST00000380013.4:c.3017T>C	p.Val1006Ala	p.V1006A	ENST00000380013	NM_001127208.2	1006	gTa/gCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434090	49434090	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	32	255	1	ENST00000301067.7:c.7463C>A	p.Ser2488Ter	p.S2488*	ENST00000301067	NM_003482.3	2488	tCg/tAg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942757	44942758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	373	702	0	ENST00000377967.4:c.3338dup	p.Ser1114IlefsTer37	p.S1114Ifs*37	ENST00000377967	NM_021140.2	1113	gta/gTta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	117	434	0	ENST00000269305.4:c.712del	p.Cys238ValfsTer9	p.C238Vfs*9	ENST00000269305	NM_001126112.2	238	Tgt/gt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185170	123185170	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	75	508	0	ENST00000218089.9:c.1123del	p.Ile375LeufsTer4	p.I375Lfs*4	ENST00000218089	NM_001042749.1	374	agA/ag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	330	248	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0008073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	178	339	0				ENST00000310581	NM_198253.2																																																																																
JAK1	3716	MSKCC	GRCh37	1	65309884	65309884	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	234	369	0	ENST00000342505.4:c.2266A>T	p.Ile756Phe	p.I756F	ENST00000342505	NM_002227.2	756	Atc/Ttc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441140	149441140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	313	531	0	ENST00000286301.3:c.1772G>A	p.Gly591Glu	p.G591E	ENST00000286301	NM_005211.3	591	gGa/gAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425421	49425421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	328	524	0	ENST00000301067.7:c.13067G>A	p.Gly4356Glu	p.G4356E	ENST00000301067	NM_003482.3	4356	gGg/gAg																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873698	35873698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	357	502	0	ENST00000216797.5:c.153G>C	p.Glu51Asp	p.E51D	ENST00000216797	NM_020529.2	51	gaG/gaC																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873756	35873756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	342	481	1	ENST00000216797.5:c.95G>A	p.Ser32Asn	p.S32N	ENST00000216797	NM_020529.2	32	aGc/aAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878364	151878380	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGGTGTAACAAACAA	ACAGGTGTAACAAACAA	-			P-0008073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	341	451	0	ENST00000262189.6:c.6565_6581del	p.Leu2189AsnfsTer7	p.L2189Nfs*7	ENST00000262189	NM_170606.2	2189	TTGTTTGTTACACCTGTa/a																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	192	308	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	273	384	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779715	3779715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	139	307	0	ENST00000262367.5:c.5333C>T	p.Ser1778Leu	p.S1778L	ENST00000262367	NM_004380.2	1778	tCg/tTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793483	18793483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	78	480	0	ENST00000266497.5:c.4180G>A	p.Glu1394Lys	p.E1394K	ENST00000266497		1394	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295230	1295230	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	190	315	0				ENST00000310581	NM_198253.2																																																																																
SPEN	23013	MSKCC	GRCh37	1	16262001	16262001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	63	208	0	ENST00000375759.3:c.9266C>T	p.Ser3089Phe	p.S3089F	ENST00000375759	NM_015001.2	3089	tCc/tTc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363635	40363635	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	109	261	0	ENST00000397332.2:c.594A>C	p.Glu198Asp	p.E198D	ENST00000397332	NM_001033082.2	198	gaA/gaC																																																																														
PARP1	142	MSKCC	GRCh37	1	226578130	226578130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	228	351	0	ENST00000366794.5:c.598C>T	p.Pro200Ser	p.P200S	ENST00000366794	NM_001618.3	200	Cca/Tca																																																																														
FH	2271	MSKCC	GRCh37	1	241667351	241667351	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	181	788	0	ENST00000366560.3:c.1099A>T	p.Ile367Phe	p.I367F	ENST00000366560	NM_000143.3	367	Atc/Ttc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660801	227660801	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	167	339	0	ENST00000305123.5:c.2654T>A	p.Leu885Gln	p.L885Q	ENST00000305123	NM_005544.2	885	cTg/cAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691947	30691947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	59	288	0	ENST00000359013.4:c.524C>T	p.Ser175Leu	p.S175L	ENST00000359013	NM_001024847.2	175	tCa/tTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947223	178947223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	125	382	0	ENST00000263967.3:c.2659G>A	p.Gly887Arg	p.G887R	ENST00000263967	NM_006218.2	887	Gga/Aga																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127391	55127391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	68	592	0	ENST00000257290.5:c.179C>T	p.Pro60Leu	p.P60L	ENST00000257290	NM_006206.4	60	cCc/cTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532819	187532819	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	104	627	0	ENST00000441802.2:c.9574C>T	p.Gln3192Ter	p.Q3192*	ENST00000441802	NM_005245.3	3192	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112111328	112111328	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	15	242	0	ENST00000257430.4:c.425C>G	p.Ser142Ter	p.S142*	ENST00000257430	NM_000038.5	142	tCa/tGa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131977973	131977973	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	57	447	0	ENST00000265335.6:c.3856T>C	p.Phe1286Leu	p.F1286L	ENST00000265335		1286	Ttc/Ctc																																																																														
IRF4	3662	MSKCC	GRCh37	6	394923	394923	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	143	362	1	ENST00000380956.4:c.319T>A	p.Phe107Ile	p.F107I	ENST00000380956	NM_001195286.1	107	Ttt/Att																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964515	93964515	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	75	581	0	ENST00000369303.4:c.2383-1G>A		p.X795_splice	ENST00000369303	NM_004440.3	795																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066482	94066482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	200	826	2	ENST00000369303.4:c.1277G>A	p.Arg426Gln	p.R426Q	ENST00000369303	NM_004440.3	426	cGa/cAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954934	2954934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	311	602	0	ENST00000396946.4:c.2776C>T	p.Pro926Ser	p.P926S	ENST00000396946	NM_032415.4	926	Ccg/Tcg																																																																														
HGF	3082	MSKCC	GRCh37	7	81346574	81346574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	102	594	0	ENST00000222390.5:c.1379C>T	p.Pro460Leu	p.P460L	ENST00000222390	NM_000601.4	460	cCt/cTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331661	8331661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	240	749	0	ENST00000356435.5:c.5455G>A	p.Gly1819Arg	p.G1819R	ENST00000356435		1819	Gga/Aga																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409487	80409487	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	9	349	0	ENST00000286548.4:c.627A>C	p.Gln209His	p.Q209H	ENST00000286548	NM_002072.3	209	caA/caC																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742814	17742814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	384	448	0	ENST00000250003.3:c.722G>A	p.Gly241Glu	p.G241E	ENST00000250003	NM_002478.4	241	gGg/gAg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998991	100998991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	388	601	0	ENST00000325455.5:c.811G>A	p.Glu271Lys	p.E271K	ENST00000325455	NM_001202474.3	271	Gaa/Aaa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195282	102195282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	141	987	1	ENST00000263464.3:c.42G>A	p.Met14Ile	p.M14I	ENST00000263464	NM_001165.4	14	atG/atA																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245343	46245343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	157	479	1	ENST00000334344.6:c.3437C>T	p.Ser1146Leu	p.S1146L	ENST00000334344	NM_152641.2	1146	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435233	49435233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	183	250	0	ENST00000301067.7:c.6320C>T	p.Pro2107Leu	p.P2107L	ENST00000301067	NM_003482.3	2107	cCc/cTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864423	57864423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	322	776	1	ENST00000228682.2:c.1900G>A	p.Gly634Arg	p.G634R	ENST00000228682	NM_005269.2	634	Ggg/Agg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563270	21563270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	324	486	2	ENST00000382592.4:c.649C>T	p.Pro217Ser	p.P217S	ENST00000382592	NM_014572.2	217	Ccc/Tcc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906780	32906780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	28	771	0	ENST00000380152.3:c.1165C>T	p.Pro389Ser	p.P389S	ENST00000380152		389	Ccg/Tcg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913830	32913830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	49	997	0	ENST00000380152.3:c.5338G>A	p.Glu1780Lys	p.E1780K	ENST00000380152		1780	Gaa/Aaa																																																																														
B2M	567	MSKCC	GRCh37	15	45007620	45007620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	27	275	0	ENST00000558401.1:c.68-1G>A		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472600	88472600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	225	449	0	ENST00000360948.2:c.1955G>A	p.Gly652Glu	p.G652E	ENST00000360948	NM_001012338.2	652	gGg/gAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934585	9934585	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	195	636	0	ENST00000330684.3:c.1570T>G	p.Phe524Val	p.F524V	ENST00000330684	NM_001134407.1	524	Ttc/Gtc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351541	89351541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1288	425	1023	0	ENST00000301030.4:c.1409G>A	p.Gly470Glu	p.G470E	ENST00000301030	NM_001256183.1	470	gGa/gAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351737	89351737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1256	366	1170	1	ENST00000301030.4:c.1213C>T	p.Arg405Cys	p.R405C	ENST00000301030	NM_001256183.1	405	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40709551	40709551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1197	216	863	0	ENST00000373198.4:c.4351G>A	p.Glu1451Lys	p.E1451K	ENST00000373198	NM_133170.3	1451	Gag/Aag																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164451	36164451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	74	149	0	ENST00000300305.3:c.1424C>T	p.Ala475Val	p.A475V	ENST00000300305		475	gCc/gTc																																																																														
BTK	695	MSKCC	GRCh37	X	100608325	100608325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	67	375	0	ENST00000308731.7:c.1765G>A	p.Glu589Lys	p.E589K	ENST00000308731	NM_000061.2	589	Gaa/Aaa																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201492	67201493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	317	538	0	ENST00000312629.5:c.934dup	p.Ile312AsnfsTer10	p.I312Nfs*10	ENST00000312629	NM_003952.2	311	-/A																																																																														
NF1	4763	MSKCC	GRCh37	17	29556122	29556123	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	49	185	0	ENST00000358273.4:c.2492_2493del	p.Thr831ArgfsTer33	p.T831Rfs*33	ENST00000358273	NM_001042492.2	830	gAC/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971097	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	271	273	0	ENST00000304494.5:c.261_262delinsAA	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	87	cgGGag/cgAAag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971097	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	271	273	0	ENST00000304494.5:c.261_262delinsAA	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	87	cgGGag/cgAAag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971097	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	271	273	0	ENST00000304494.5:c.261_262delinsAA	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	87	cgGGag/cgAAag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71161718	71161719	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	105	628	0	ENST00000318789.4:c.250_251delinsTT	p.Pro84Phe	p.P84F	ENST00000318789	NM_032682.5	84	CCc/TTc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631826	90631827	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	187	437	0	ENST00000330062.3:c.526_527delinsAA	p.Gly176Asn	p.G176N	ENST00000330062	NM_002168.2	176	GGc/AAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427428	49427429	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	180	595	0	ENST00000301067.7:c.11059_11060delinsAA	p.Gly3687Asn	p.G3687N	ENST00000301067	NM_003482.3	3687	GGt/AAt																																																																														
TET1	80312	MSKCC	GRCh37	10	70450712	70450713	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	97	485	0	ENST00000373644.4:c.5552_5553delinsTT	p.Ser1851Phe	p.S1851F	ENST00000373644	NM_030625.2	1851	tCC/tTT																																																																														
POLE	5426	MSKCC	GRCh37	12	133225530	133225531	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0008080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	225	519	0	ENST00000320574.5:c.4133_4134delinsAA	p.Gly1378Glu	p.G1378E	ENST00000320574	NM_006231.2	1378	gGT/gAA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	25	232	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	35	288	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52705256	52705256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	53	472	0	ENST00000322088.6:c.138G>T	p.Arg46Ser	p.R46S	ENST00000322088	NM_014225.5	46	agG/agT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	368	452	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	213	261	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108170575	108170576	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0008103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	458	445	0	ENST00000278616.4:c.5140_5141del	p.Met1714AlafsTer6	p.M1714Afs*6	ENST00000278616	NM_000051.3	1714	ATg/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	107	341	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	204	563	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16263754	16263754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	138	394	0	ENST00000375759.3:c.10123G>A	p.Gly3375Ser	p.G3375S	ENST00000375759	NM_015001.2	3375	Ggt/Agt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	193	486	4	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	66	264	1	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	38	330	3	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443613	52443613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	91	390	0	ENST00000460680.1:c.79delG	p.Val27CysfsTer45	p.V27Cfs*45	ENST00000460680	NM_004656.3	27	Gtg/tg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14026115	14026116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	112	586	0	ENST00000311895.7:c.1081dup	p.Met361AsnfsTer4	p.M361Nfs*4	ENST00000311895	NM_005236.2	359	gaa/gAaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914070	32914070	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	148	930	0	ENST00000380152.3:c.5583delA	p.Val1862Ter	p.V1862*	ENST00000380152		1860	Aaa/aa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771923	135771923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	110	323	0	ENST00000298552.3:c.3194C>T	p.Thr1065Met	p.T1065M	ENST00000298552	NM_001162426.1	1065	aCg/aTg																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	51	549	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737107	145737109	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	142	490	0	ENST00000428558.2:c.3457_3459delGAG	p.Glu1153del	p.E1153del	ENST00000428558	NM_004260.3	1153	GAG/-																																																																														
MITF	4286	MSKCC	GRCh37	3	70008501	70008501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147148433		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	146	400	1	ENST00000352241.4:c.1091G>A	p.Arg364His	p.R364H	ENST00000352241	NM_198159.2	364	cGc/cAc																																																																														
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	136	385	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444378	49444378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	111	334	1	ENST00000301067.7:c.2993del	p.Pro998LeufsTer2	p.P998Lfs*2	ENST00000301067	NM_003482.3	998	cCt/ct																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615698	1615698	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1412	100	899	0	ENST00000344749.5:c.1573delC	p.Arg525GlyfsTer18	p.R525Gfs*18	ENST00000344749	NM_001136139.2	525	Cgg/gg																																																																														
ATM	472	MSKCC	GRCh37	11	108114842	108114842	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145355104		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	80	442	1	ENST00000278616.4:c.659C>T	p.Ala220Val	p.A220V	ENST00000278616	NM_000051.3	220	gCg/gTg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	202	575	4	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339093	65339093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	177	536	0	ENST00000342505.4:c.443C>A	p.Pro148His	p.P148H	ENST00000342505	NM_002227.2	148	cCt/cAt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430832	78430832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	168	454	0	ENST00000370768.2:c.557C>T	p.Ala186Val	p.A186V	ENST00000370768	NM_003902.3	186	gCa/gTa																																																																														
ALK	238	MSKCC	GRCh37	2	29450539	29450539	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	47	419	0	ENST00000389048.3:c.2816-1G>T		p.X939_splice	ENST00000389048	NM_004304.4	939																																																																															
BARD1	580	MSKCC	GRCh37	2	215646041	215646041	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	48	485	0	ENST00000260947.4:c.557G>C	p.Ser186Thr	p.S186T	ENST00000260947	NM_000465.2	186	aGt/aCt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37081727	37081727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	203	480	0	ENST00000231790.2:c.1609C>T	p.Gln537Ter	p.Q537*	ENST00000231790	NM_000249.3	537	Cag/Tag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934752	49934752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	215	593	1	ENST00000296474.3:c.2144G>T	p.Arg715Leu	p.R715L	ENST00000296474	NM_002447.2	715	cGg/cTg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49939835	49939835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1190	241	773	0	ENST00000296474.3:c.1208C>T	p.Ser403Leu	p.S403L	ENST00000296474	NM_002447.2	403	tCg/tTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55595603	55595603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	78	393	0	ENST00000288135.5:c.2093C>A	p.Ala698Glu	p.A698E	ENST00000288135	NM_000222.2	698	gCa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112178790	112178790	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	56	540	0	ENST00000257430.4:c.7499A>G	p.Gln2500Arg	p.Q2500R	ENST00000257430	NM_000038.5	2500	cAg/cGg																																																																														
APC	324	MSKCC	GRCh37	5	112178936	112178936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199539353		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	108	419	0	ENST00000257430.4:c.7645C>T	p.Arg2549Cys	p.R2549C	ENST00000257430	NM_000038.5	2549	Cgt/Tgt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509322	149509322	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	33	307	0	ENST00000261799.4:c.1577A>G	p.His526Arg	p.H526R	ENST00000261799	NM_002609.3	526	cAc/cGc																																																																														
NPM1	4869	MSKCC	GRCh37	5	170827167	170827167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	48	556	0	ENST00000296930.5:c.535G>A	p.Asp179Asn	p.D179N	ENST00000296930	NM_002520.6	179	Gat/Aat																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741800	145741800	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	196	434	1	ENST00000428558.2:c.703C>T	p.Gln235Ter	p.Q235*	ENST00000428558	NM_004260.3	235	Cag/Tag																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900201	101900201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	128	638	2	ENST00000374994.4:c.635G>A	p.Gly212Asp	p.G212D	ENST00000374994	NM_004612.2	212	gGc/gAc																																																																														
ABL1	25	MSKCC	GRCh37	9	133729594	133729594	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	178	576	0	ENST00000318560.5:c.223A>G	p.Ser75Gly	p.S75G	ENST00000318560	NM_005157.4	75	Agt/Ggt																																																																														
RET	5979	MSKCC	GRCh37	10	43601873	43601873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	159	422	0	ENST00000355710.3:c.917C>T	p.Ala306Val	p.A306V	ENST00000355710	NM_020975.4	306	gCa/gTa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63759873	63759873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	53	474	0	ENST00000279873.7:c.526G>A	p.Val176Met	p.V176M	ENST00000279873	NM_032199.2	176	Gtg/Atg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123246907	123246907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	170	630	0	ENST00000358487.5:c.2018A>G	p.Glu673Gly	p.E673G	ENST00000358487	NM_000141.4	673	gAa/gGa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375594	118375594	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs191446381		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	48	326	0	ENST00000534358.1:c.8987A>G	p.His2996Arg	p.H2996R	ENST00000534358	NM_005933.3	2996	cAt/cGt																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484069	50484069	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	163	518	1	ENST00000394963.4:c.919A>T	p.Ile307Phe	p.I307F	ENST00000394963	NM_003076.4	307	Atc/Ttc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489085	56489085	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	54	504	0	ENST00000267101.3:c.1904T>A	p.Val635Glu	p.V635E	ENST00000267101	NM_001982.3	635	gTg/gAg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856019	111856019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	58	393	0	ENST00000341259.2:c.70C>T	p.Arg24Trp	p.R24W	ENST00000341259	NM_005475.2	24	Cgg/Tgg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856116	111856116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	173	401	0	ENST00000341259.2:c.167C>T	p.Ala56Val	p.A56V	ENST00000341259	NM_005475.2	56	gCg/gTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562282	21562282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	45	469	0	ENST00000382592.4:c.1637C>T	p.Ala546Val	p.A546V	ENST00000382592	NM_014572.2	546	gCg/gTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563444	21563444	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	188	543	0	ENST00000382592.4:c.476-1G>T		p.X159_splice	ENST00000382592	NM_014572.2	159																																																																															
RB1	5925	MSKCC	GRCh37	13	48878068	48878068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	50	135	0	ENST00000267163.4:c.20G>A	p.Arg7Gln	p.R7Q	ENST00000267163	NM_000321.2	7	cGa/cAa																																																																														
RAD51	5888	MSKCC	GRCh37	15	40993338	40993338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145617142		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	151	565	0	ENST00000267868.3:c.164C>T	p.Ala55Val	p.A55V	ENST00000267868	NM_002875.4	55	gCg/gTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99472849	99472849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	174	512	1	ENST00000268035.6:c.2845G>A	p.Gly949Arg	p.G949R	ENST00000268035	NM_000875.3	949	Gga/Aga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112583	2112583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	290	435	0	ENST00000219476.3:c.1343T>C	p.Leu448Pro	p.L448P	ENST00000219476	NM_000548.3	448	cTg/cCg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857151	9857151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	165	602	0	ENST00000330684.3:c.4250G>A	p.Arg1417Gln	p.R1417Q	ENST00000330684	NM_001134407.1	1417	cGg/cAg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662450	67662450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	199	594	0	ENST00000264010.4:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000264010	NM_006565.3	566	Cgt/Tgt																																																																														
CDH1	999	MSKCC	GRCh37	16	68842703	68842703	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	170	615	1	ENST00000261769.5:c.639G>A	p.Trp213Ter	p.W213*	ENST00000261769	NM_004360.3	213	tgG/tgA																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805956	89805956	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	106	329	1	ENST00000389301.3:c.3940A>G	p.Arg1314Gly	p.R1314G	ENST00000389301	NM_000135.2	1314	Agg/Ggg																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428245	33428245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	127	454	1	ENST00000335858.7:c.542C>T	p.Ala181Val	p.A181V	ENST00000335858	NM_133629.2	181	gCg/gTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37863341	37863341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	181	596	0	ENST00000269571.5:c.172G>A	p.Gly58Arg	p.G58R	ENST00000269571		58	Gga/Aga																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40354428	40354428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	224	946	0	ENST00000293328.3:c.2167G>A	p.Ala723Thr	p.A723T	ENST00000293328	NM_012448.3	723	Gcc/Acc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	101	361	3	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439930	56439930	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2285990		P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	92	254	0	ENST00000407977.2:c.662G>A	p.Arg221Gln	p.R221Q	ENST00000407977		221	cGg/cAg																																																																														
CTD-2561B21.3	0	MSKCC	GRCh37	17	78935208	78935208	+	splice_donor_variant,non_coding_transcript_variant	Splice_Site	SNP	A	A	G			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	42	449	1	ENST00000571591.1:n.304+2T>C		p.X102_splice	ENST00000571591		102																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281256	15281256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	134	289	0	ENST00000263388.2:c.5000G>A	p.Arg1667His	p.R1667H	ENST00000263388	NM_000435.2	1667	cGc/cAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15379824	15379824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	62	576	1	ENST00000263377.2:c.315G>T	p.Met105Ile	p.M105I	ENST00000263377	NM_058243.2	105	atG/atT																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918720	50918720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	141	374	1	ENST00000440232.2:c.2590G>A	p.Ala864Thr	p.A864T	ENST00000440232	NM_002691.3	864	Gca/Aca																																																																														
PAK7	57144	MSKCC	GRCh37	20	9543608	9543608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	188	560	1	ENST00000353224.5:c.1546G>A	p.Gly516Ser	p.G516S	ENST00000353224	NM_177990.2	516	Ggc/Agc																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309666	30309666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	54	432	0	ENST00000307677.4:c.356C>T	p.Ala119Val	p.A119V	ENST00000307677	NM_138578.1	119	gCa/gTa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923083	39923083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	64	410	0	ENST00000378444.4:c.3625C>T	p.Arg1209Cys	p.R1209C	ENST00000378444	NM_001123385.1	1209	Cgc/Tgc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030463	47030463	+	intron_variant	Intron	SNP	C	C	T			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	236	315	0	ENST00000329236.7:c.201+1566C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
SETD2	29072	MSKCC	GRCh37	3	47163711	47163712	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	34	466	0	ENST00000409792.3:c.2414_2415del	p.Cys805Ter	p.C805*	ENST00000409792	NM_014159.6	805	tGT/t																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448295	56448296	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	103	232	0	ENST00000407977.2:c.351_352insAC	p.Pro118ThrfsTer41	p.P118Tfs*41	ENST00000407977		117	-/AC																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983227	149983228	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	112	507	0	ENST00000253339.5:c.3030dupT	p.Lys1011Ter	p.K1011*	ENST00000253339		1010	-/T																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63553979	63553980	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	185	524	0	ENST00000307078.5:c.759_760del	p.Lys253AsnfsTer15	p.K253Nfs*15	ENST00000307078	NM_004655.3	253	aaAAct/aact																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500894	8500894	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	115	464	0	ENST00000356435.5:c.1988del	p.Leu663TrpfsTer25	p.L663Wfs*25	ENST00000356435		663	tTg/tg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151848015	151848017	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	114	469	0	ENST00000262189.6:c.12742_12744del	p.Ser4248del	p.S4248del	ENST00000262189	NM_170606.2	4248	TCA/-																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199761	138199763	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	161	564	0	ENST00000237289.4:c.1183_1185del	p.Phe395del	p.F395del	ENST00000237289	NM_001270507.1	393	ccCTTc/ccc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64128984	64128984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	197	490	0	ENST00000334205.4:c.618del	p.Glu207LysfsTer26	p.E207Kfs*26	ENST00000334205	NM_003942.2	205	gCc/gc																																																																														
EP300	2033	MSKCC	GRCh37	22	41533685	41533689	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTC	CCCTC	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	162	543	0	ENST00000263253.7:c.1653_1657del	p.Ser552GlyfsTer63	p.S552Gfs*63	ENST00000263253	NM_001429.3	551	CCCTCc/c																																																																														
EP300	2033	MSKCC	GRCh37	22	41489075	41489076	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	124	400	0	ENST00000263253.7:c.70_71del	p.Ser24GlyfsTer14	p.S24Gfs*14	ENST00000263253	NM_001429.3	23	CTc/c																																																																														
BLM	641	MSKCC	GRCh37	15	91310207	91310208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	97	715	0	ENST00000355112.3:c.2268dup	p.Asp757ArgfsTer18	p.D757Rfs*18	ENST00000355112	NM_000057.2	754	tca/tcAa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569765	95569765	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	124	416	2	ENST00000343455.3:c.3968del	p.Leu1323Ter	p.L1323*	ENST00000343455	NM_177438.2	1323	tTa/ta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	50	240	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	150	542	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	245	604	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	226	342	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	226	342	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	168	491	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
CASP8	841	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	127	327	1	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539648	187539648	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	136	621	0	ENST00000441802.2:c.8092del	p.Met2698CysfsTer25	p.M2698Cfs*25	ENST00000441802	NM_005245.3	2698	Atg/tg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584734	187584735	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0008214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	117	482	0	ENST00000441802.2:c.3297_3298dup	p.Glu1100ValfsTer9	p.E1100Vfs*9	ENST00000441802	NM_005245.3	1100	gaa/gTGaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	69	179	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40980844	40980844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	302	387	0	ENST00000373198.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000373198	NM_133170.3	548	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	181	251	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043938	180043938	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	105	567	0	ENST00000261937.6:c.3058C>T	p.Gln1020Ter	p.Q1020*	ENST00000261937	NM_182925.4	1020	Cag/Tag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436175	56436175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	195	342	1	ENST00000407977.2:c.962C>T	p.Ser321Leu	p.S321L	ENST00000407977		321	tCa/tTa																																																																														
ABL1	25	MSKCC	GRCh37	9	133760520	133760520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1240583398		P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	98	513	0	ENST00000318560.5:c.2843C>T	p.Pro948Leu	p.P948L	ENST00000318560	NM_005157.4	948	cCc/cTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164832	47164832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	100	351	0	ENST00000409792.3:c.1294C>T	p.Arg432Cys	p.R432C	ENST00000409792	NM_014159.6	432	Cgt/Tgt																																																																														
TET1	80312	MSKCC	GRCh37	10	70450891	70450891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	155	264	0	ENST00000373644.4:c.5731C>T	p.Pro1911Ser	p.P1911S	ENST00000373644	NM_030625.2	1911	Ccc/Tcc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658412	117658412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	99	466	0	ENST00000368508.3:c.5171C>T	p.Ser1724Leu	p.S1724L	ENST00000368508	NM_002944.2	1724	tCa/tTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059246	27059246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	380	518	0	ENST00000324856.7:c.1883T>C	p.Met628Thr	p.M628T	ENST00000324856	NM_006015.4	628	aTg/aCg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156837991	156837991	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	216	389	0	ENST00000524377.1:c.524T>G	p.Leu175Arg	p.L175R	ENST00000524377	NM_002529.3	175	cTg/cGg																																																																														
SDHC	6391	MSKCC	GRCh37	1	161310389	161310389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	399	607	0	ENST00000367975.2:c.185C>G	p.Ser62Cys	p.S62C	ENST00000367975	NM_003001.3	62	tCt/tGt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725511	162725511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	508	423	0	ENST00000367921.3:c.623C>T	p.Ser208Phe	p.S208F	ENST00000367921	NM_006182.2	208	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	29543641	29543641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	97	405	0	ENST00000389048.3:c.1522G>A	p.Asp508Asn	p.D508N	ENST00000389048	NM_004304.4	508	Gat/Aat																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735386	204735386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	97	238	0	ENST00000302823.3:c.187C>T	p.Pro63Ser	p.P63S	ENST00000302823	NM_005214.4	63	Cca/Tca																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141026	55141026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	105	410	3	ENST00000257290.5:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000257290	NM_006206.4	558	Cgc/Tgc																																																																														
TET2	54790	MSKCC	GRCh37	4	106155962	106155962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	105	237	1	ENST00000380013.4:c.863C>T	p.Pro288Leu	p.P288L	ENST00000380013	NM_001127208.2	288	cCa/cTa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35860954	35860954	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	186	243	0	ENST00000303115.3:c.83G>A	p.Gly28Glu	p.G28E	ENST00000303115	NM_002185.3	28	gGa/gAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178656	32178656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	255	379	0	ENST00000375023.3:c.2738C>T	p.Ser913Phe	p.S913F	ENST00000375023	NM_004557.3	913	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068121	94068121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149408123		P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	163	630	1	ENST00000369303.4:c.841C>T	p.Arg281Cys	p.R281C	ENST00000369303	NM_004440.3	281	Cgt/Tgt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94128987	94128987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	156	596	1	ENST00000369303.4:c.73G>A	p.Gly25Arg	p.G25R	ENST00000369303	NM_004440.3	25	Ggg/Agg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681028	117681028	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	105	392	0	ENST00000368508.3:c.3592T>C	p.Tyr1198His	p.Y1198H	ENST00000368508	NM_002944.2	1198	Tat/Cat																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729961	41729961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1809	422	945	0	ENST00000242208.4:c.568G>A	p.Glu190Lys	p.E190K	ENST00000242208	NM_002192.2	190	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81386512	81386512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	108	378	1	ENST00000222390.5:c.475G>A	p.Glu159Lys	p.E159K	ENST00000222390	NM_000601.4	159	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116340334	116340334	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	80	168	0	ENST00000397752.3:c.1196A>T	p.Asn399Ile	p.N399I	ENST00000397752	NM_000245.2	399	aAt/aTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878983	151878983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	239	340	0	ENST00000262189.6:c.5962C>T	p.Pro1988Ser	p.P1988S	ENST00000262189	NM_170606.2	1988	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340437	8340437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	265	403	0	ENST00000356435.5:c.5159C>T	p.Pro1720Leu	p.P1720L	ENST00000356435		1720	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484355	8484355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	61	350	0	ENST00000356435.5:c.3177G>A	p.Met1059Ile	p.M1059I	ENST00000356435		1059	atG/atA																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771963	135771963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	127	182	0	ENST00000298552.3:c.3154C>T	p.Pro1052Ser	p.P1052S	ENST00000298552	NM_001162426.1	1052	Cca/Tca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374147	118374147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	239	428	0	ENST00000534358.1:c.7540G>A	p.Glu2514Lys	p.E2514K	ENST00000534358	NM_005933.3	2514	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375983	118375983	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	259	440	0	ENST00000534358.1:c.9376G>T	p.Gly3126Ter	p.G3126*	ENST00000534358	NM_005933.3	3126	Gga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392816	118392816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	297	445	0	ENST00000534358.1:c.11848C>T	p.Pro3950Ser	p.P3950S	ENST00000534358	NM_005933.3	3950	Ccc/Tcc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793369	18793369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	87	459	0	ENST00000266497.5:c.4066C>T	p.Pro1356Ser	p.P1356S	ENST00000266497		1356	Cca/Tca																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488276	56488276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	195	437	1	ENST00000267101.3:c.1795C>T	p.Pro599Ser	p.P599S	ENST00000267101	NM_001982.3	599	Cca/Tca																																																																														
RB1	5925	MSKCC	GRCh37	13	48937088	48937088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	143	297	0	ENST00000267163.4:c.856G>A	p.Asp286Asn	p.D286N	ENST00000267163	NM_000321.2	286	Gat/Aat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349954	89349954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	356	915	0	ENST00000301030.4:c.2996C>T	p.Pro999Leu	p.P999L	ENST00000301030	NM_001256183.1	999	cCg/cTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29663800	29663800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1060500382		P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	285	411	1	ENST00000358273.4:c.6295C>T	p.His2099Tyr	p.H2099Y	ENST00000358273	NM_001042492.2	2099	Cat/Tat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880225	37880225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	127	640	1	ENST00000269571.5:c.2269G>A	p.Glu757Lys	p.E757K	ENST00000269571		757	Gaa/Aaa																																																																														
SRC	6714	MSKCC	GRCh37	20	36012614	36012614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	270	311	0	ENST00000358208.4:c.58C>T	p.Pro20Ser	p.P20S	ENST00000358208		20	Ccc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306800	41306800	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	170	145	0	ENST00000373198.4:c.860-1G>A		p.X287_splice	ENST00000373198	NM_133170.3	287																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41420050	41420050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	303	330	0	ENST00000373198.4:c.271C>T	p.Leu91Phe	p.L91F	ENST00000373198	NM_133170.3	91	Ctc/Ttc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961315	54961315	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	215	303	0	ENST00000312783.6:c.317C>T	p.Pro106Leu	p.P106L	ENST00000312783	NM_198436.1	106	cCt/cTt																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130427	29130427	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	210	382	0	ENST00000328354.6:c.283C>T	p.Arg95Ter	p.R95*	ENST00000328354	NM_007194.3	95	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987421	2987422	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	783	320	0	ENST00000396946.4:c.8-1_8delinsAA		p.X3_splice	ENST00000396946	NM_032415.4	3																																																																															
PAK7	57144	MSKCC	GRCh37	20	9546674	9546675	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	190	414	0	ENST00000353224.5:c.1347_1348delinsAA	p.Ala450Thr	p.A450T	ENST00000353224	NM_177990.2	449	ttGGcc/ttAAcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	49	228	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0008240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	39	212	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845367	151845367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	155	372	0	ENST00000262189.6:c.13645C>T	p.Arg4549Cys	p.R4549C	ENST00000262189	NM_170606.2	4549	Cgc/Tgc																																																																														
HGF	3082	MSKCC	GRCh37	7	81336625	81336625	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	227	583	0	ENST00000222390.5:c.1597C>T	p.Arg533Ter	p.R533*	ENST00000222390	NM_000601.4	533	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012370	152012370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	236	552	2	ENST00000262189.6:c.443G>T	p.Gly148Val	p.G148V	ENST00000262189	NM_170606.2	148	gGa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440398	49440398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	114	369	1	ENST00000301067.7:c.4412G>A	p.Cys1471Tyr	p.C1471Y	ENST00000301067	NM_003482.3	1471	tGc/tAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11135079	11135079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	48	358	0	ENST00000344626.4:c.3046G>A	p.Val1016Met	p.V1016M	ENST00000344626	NM_003072.3	1016	Gtg/Atg																																																																														
ERG	2078	MSKCC	GRCh37	21	39774536	39774536	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	196	578	0	ENST00000288319.7:c.616G>C	p.Asp206His	p.D206H	ENST00000288319	NM_182918.3	206	Gat/Cat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3842090	3842090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	140	387	0	ENST00000262367.5:c.1222del	p.His408IlefsTer26	p.H408Ifs*26	ENST00000262367	NM_004380.2	408	Cat/at																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	322	493	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			556	418	303	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			307	709	335	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
PAK7	57144	MSKCC	GRCh37	20	9547022	9547022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			182	260	114	0	ENST00000353224.5:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000353224	NM_177990.2	334	Gat/Aat																																																																														
ALK	238	MSKCC	GRCh37	2	29498004	29498004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			826	643	576	0	ENST00000389048.3:c.2002G>A	p.Glu668Lys	p.E668K	ENST00000389048	NM_004304.4	668	Gaa/Aaa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			883	528	408	0	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			400	671	508	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189456447	189456447	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			982	329	418	0	ENST00000264731.3:c.208C>T	p.Gln70Ter	p.Q70*	ENST00000264731	NM_003722.4	70	Cag/Tag																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			976	798	699	1	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185775	32185775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	295	384	0	ENST00000375023.3:c.1621C>T	p.Pro541Ser	p.P541S	ENST00000375023	NM_004557.3	541	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			825	445	445	1	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78866579	78866579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			719	270	351	0	ENST00000306801.3:c.2152C>T	p.Arg718Cys	p.R718C	ENST00000306801	NM_020761.2	718	Cgt/Tgt																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94203678	94203678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			446	381	411	0	ENST00000323929.3:c.976C>T	p.Pro326Ser	p.P326S	ENST00000323929	NM_005591.3	326	Cct/Tct																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469086	25469086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			852	302	460	0	ENST00000264709.3:c.1372C>T	p.Arg458Trp	p.R458W	ENST00000264709	NM_175629.2	458	Cgg/Tgg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073598	8073598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1162	460	676	0	ENST00000377482.5:c.1061C>T	p.Pro354Leu	p.P354L	ENST00000377482	NM_018948.3	354	cCt/cTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			850	326	506	1	ENST00000324856.7:c.2291C>T	p.Ser764Phe	p.S764F	ENST00000324856	NM_006015.4	764	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106805	27106805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			713	110	325	0	ENST00000324856.7:c.6416C>T	p.Pro2139Leu	p.P2139L	ENST00000324856	NM_006015.4	2139	cCc/cTc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649701	206649701	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			511	154	184	0	ENST00000367120.3:c.536A>T	p.Tyr179Phe	p.Y179F	ENST00000367120	NM_014002.3	179	tAc/tTc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965761	25965761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			797	287	359	0	ENST00000435504.4:c.3445C>T	p.Arg1149Cys	p.R1149C	ENST00000435504		1149	Cgt/Tgt																																																																														
ALK	238	MSKCC	GRCh37	2	29416469	29416469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			955	331	553	0	ENST00000389048.3:c.4484C>T	p.Ser1495Phe	p.S1495F	ENST00000389048	NM_004304.4	1495	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	29474031	29474031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			716	605	472	0	ENST00000389048.3:c.2144G>A	p.Gly715Glu	p.G715E	ENST00000389048	NM_004304.4	715	gGg/gAg																																																																														
ALK	238	MSKCC	GRCh37	2	29754827	29754827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			545	400	344	0	ENST00000389048.3:c.1108G>A	p.Glu370Lys	p.E370K	ENST00000389048	NM_004304.4	370	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286791	212286791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			532	440	422	0	ENST00000342788.4:c.2905G>A	p.Glu969Lys	p.E969K	ENST00000342788	NM_005235.2	969	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288993	212288993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			887	304	552	0	ENST00000342788.4:c.2753G>A	p.Gly918Glu	p.G918E	ENST00000342788	NM_005235.2	918	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812181	212812181	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			795	280	418	0	ENST00000342788.4:c.395A>T	p.Gln132Leu	p.Q132L	ENST00000342788	NM_005235.2	132	cAa/cTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468357	89468357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			589	119	225	0	ENST00000336596.2:c.1891G>A	p.Glu631Lys	p.E631K	ENST00000336596	NM_005233.5	631	Gaa/Aaa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468522	89468522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			936	206	360	0	ENST00000336596.2:c.2056G>A	p.Glu686Lys	p.E686K	ENST00000336596	NM_005233.5	686	Gaa/Aaa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413734	138413734	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			547	175	265	0	ENST00000289153.2:c.1786C>T	p.Gln596Ter	p.Q596*	ENST00000289153	NM_006219.2	596	Cag/Tag																																																																														
ATR	545	MSKCC	GRCh37	3	142277609	142277609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			400	272	257	0	ENST00000350721.4:c.1742C>T	p.Ser581Leu	p.S581L	ENST00000350721	NM_001184.3	581	tCa/tTa																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182681705	182681705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			888	300	364	2	ENST00000292782.4:c.353C>T	p.Ser118Phe	p.S118F	ENST00000292782	NM_020640.2	118	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189456474	189456474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			884	497	416	0	ENST00000264731.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000264731	NM_003722.4	79	Gaa/Aaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189607164	189607164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			688	694	445	0	ENST00000264731.3:c.1543G>A	p.Asp515Asn	p.D515N	ENST00000264731	NM_003722.4	515	Gac/Aac																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749412	41749412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			614	235	272	0	ENST00000226382.2:c.383G>T	p.Arg128Leu	p.R128L	ENST00000226382	NM_003924.3	128	cGg/cTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518864	187518864	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			698	260	483	0	ENST00000441802.2:c.12340C>T	p.Gln4114Ter	p.Q4114*	ENST00000441802	NM_005245.3	4114	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295252	1295252	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			848	202	350	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112177697	112177697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			730	166	274	0	ENST00000257430.4:c.6406C>T	p.Leu2136Phe	p.L2136F	ENST00000257430	NM_000038.5	2136	Ctt/Ttt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523630	176523630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			956	707	568	1	ENST00000292408.4:c.2041G>A	p.Glu681Lys	p.E681K	ENST00000292408	NM_213647.1	681	Gag/Aag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030334	180030334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1251	318	489	1	ENST00000261937.6:c.3950G>A	p.Gly1317Glu	p.G1317E	ENST00000261937	NM_182925.4	1317	gGg/gAg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048115	180048115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			908	219	327	0	ENST00000261937.6:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000261937	NM_182925.4	720	Gaa/Aaa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052916	180052916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			800	516	335	0	ENST00000261937.6:c.1374G>A	p.Trp458Ter	p.W458*	ENST00000261937	NM_182925.4	458	tgG/tgA																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671595	30671595	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1300	531	442	1	ENST00000376406.3:c.5365C>T	p.Gln1789Ter	p.Q1789*	ENST00000376406	NM_014641.2	1789	Caa/Taa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673796	30673796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1269	92	294	0	ENST00000376406.3:c.3164C>T	p.Ser1055Phe	p.S1055F	ENST00000376406	NM_014641.2	1055	tCt/tTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187435	32187435	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1499	285	424	0	ENST00000375023.3:c.1444C>T	p.Gln482Ter	p.Q482*	ENST00000375023	NM_004557.3	482	Cag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662618	117662618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			334	644	538	0	ENST00000368508.3:c.4847G>A	p.Gly1616Glu	p.G1616E	ENST00000368508	NM_002944.2	1616	gGa/gAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953091	2953091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			527	368	249	1	ENST00000396946.4:c.2849C>T	p.Pro950Leu	p.P950L	ENST00000396946	NM_032415.4	950	cCt/cTt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2977561	2977561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			983	303	396	0	ENST00000396946.4:c.1123G>A	p.Val375Met	p.V375M	ENST00000396946	NM_032415.4	375	Gtg/Atg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459447	50459447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			823	171	303	0	ENST00000331340.3:c.736C>T	p.His246Tyr	p.H246Y	ENST00000331340	NM_006060.4	246	Cac/Tac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55240686	55240686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	265	424	0	ENST00000275493.2:c.1930C>T	p.Pro644Ser	p.P644S	ENST00000275493	NM_005228.3	644	Ccg/Tcg																																																																														
MET	4233	MSKCC	GRCh37	7	116436150	116436150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			798	150	274	0	ENST00000397752.3:c.4145G>A	p.Arg1382Gln	p.R1382Q	ENST00000397752	NM_000245.2	1382	cGa/cAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140494160	140494160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1340	310	498	1	ENST00000288602.6:c.1088C>T	p.Ser363Phe	p.S363F	ENST00000288602	NM_004333.4	363	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874661	151874661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	215	384	2	ENST00000262189.6:c.7877A>G	p.Glu2626Gly	p.E2626G	ENST00000262189	NM_170606.2	2626	gAa/gGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877824	151877824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	226	429	1	ENST00000262189.6:c.7121C>T	p.Ala2374Val	p.A2374V	ENST00000262189	NM_170606.2	2374	gCc/gTc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635173	87635173	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			475	340	312	0	ENST00000277120.3:c.2225T>C	p.Met742Thr	p.M742T	ENST00000277120		742	aTg/aCg																																																																														
RET	5979	MSKCC	GRCh37	10	43597873	43597873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	87	552	0	ENST00000355710.3:c.421G>A	p.Gly141Ser	p.G141S	ENST00000355710	NM_020975.4	141	Ggc/Agc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375003	118375003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			610	171	322	1	ENST00000534358.1:c.8396C>T	p.Ser2799Phe	p.S2799F	ENST00000534358	NM_005933.3	2799	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656259	18656259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201569993		P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			607	286	396	0	ENST00000266497.5:c.2938C>T	p.His980Tyr	p.H980Y	ENST00000266497		980	Cat/Tat																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56491687	56491687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			285	438	300	0	ENST00000267101.3:c.2579C>T	p.Pro860Leu	p.P860L	ENST00000267101	NM_001982.3	860	cCt/cTt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519190	103519190	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			761	147	316	0	ENST00000355739.4:c.2528A>G	p.Gln843Arg	p.Q843R	ENST00000355739	NM_000123.3	843	cAa/cGa																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68292234	68292234	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			929	221	431	0	ENST00000487270.1:c.138T>G	p.Tyr46Ter	p.Y46*	ENST00000487270	NM_133509.3	46	taT/taG																																																																														
MGA	23269	MSKCC	GRCh37	15	42021422	42021422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1710	423	631	0	ENST00000219905.7:c.3718C>T	p.Arg1240Ter	p.R1240*	ENST00000219905	NM_001164273.1	1240	Cga/Tga																																																																														
BLM	641	MSKCC	GRCh37	15	91304071	91304071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1411	315	534	0	ENST00000355112.3:c.1468C>T	p.Pro490Ser	p.P490S	ENST00000355112	NM_000057.2	490	Cct/Tct																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467191	99467191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1415	308	516	0	ENST00000268035.6:c.2572C>T	p.Pro858Ser	p.P858S	ENST00000268035	NM_000875.3	858	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857703	9857703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			748	207	408	1	ENST00000330684.3:c.3698C>T	p.Pro1233Leu	p.P1233L	ENST00000330684	NM_001134407.1	1233	cCc/cTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346223	89346223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			584	201	323	0	ENST00000301030.4:c.6727C>T	p.Pro2243Ser	p.P2243S	ENST00000301030	NM_001256183.1	2243	Ccc/Tcc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346733	89346733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			616	399	462	0	ENST00000301030.4:c.6217C>T	p.Pro2073Ser	p.P2073S	ENST00000301030	NM_001256183.1	2073	Ccg/Tcg																																																																														
NF1	4763	MSKCC	GRCh37	17	29665053	29665053	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			150	398	210	0	ENST00000358273.4:c.6715C>T	p.Gln2239Ter	p.Q2239*	ENST00000358273	NM_001042492.2	2239	Caa/Taa																																																																														
STK11	6794	MSKCC	GRCh37	19	1207178	1207178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			674	184	366	0	ENST00000326873.7:c.266C>T	p.Pro89Leu	p.P89L	ENST00000326873	NM_000455.4	89	cCc/cTc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220485	1220485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			663	265	408	0	ENST00000326873.7:c.578C>T	p.Ser193Phe	p.S193F	ENST00000326873	NM_000455.4	193	tCc/tTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355048	15355048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			515	136	190	0	ENST00000263377.2:c.2575C>T	p.Pro859Ser	p.P859S	ENST00000263377	NM_058243.2	859	Cct/Tct																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278032	18278032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			442	316	346	0	ENST00000222254.8:c.1652C>T	p.Ser551Leu	p.S551L	ENST00000222254	NM_005027.3	551	tCg/tTg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31387068	31387068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			873	602	336	0	ENST00000328111.2:c.1693C>T	p.Pro565Ser	p.P565S	ENST00000328111	NM_006892.3	565	Cct/Tct																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264737	46264737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1773	459	625	0	ENST00000371998.3:c.1607C>T	p.Ser536Phe	p.S536F	ENST00000371998		536	tCc/tTc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24167590	24167590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			560	260	170	0	ENST00000263121.7:c.974C>T	p.Thr325Ile	p.T325I	ENST00000263121	NM_003073.3	325	aCc/aTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41573068	41573068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			946	434	339	2	ENST00000263253.7:c.5353C>T	p.Leu1785Phe	p.L1785F	ENST00000263253	NM_001429.3	1785	Ctc/Ttc																																																																														
AR	367	MSKCC	GRCh37	X	66937368	66937368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			738	357	585	0	ENST00000374690.3:c.2222C>T	p.Ser741Phe	p.S741F	ENST00000374690	NM_000044.3	741	tCc/tTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95577759	95577802	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCCCAACTGGCATCAAATGGTCATCCAGTTCGCCTAACAAAT	TTTCCCAACTGGCATCAAATGGTCATCCAGTTCGCCTAACAAAT	-			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	164	574	0	ENST00000343455.3:c.2117-9_2151del		p.X706_splice	ENST00000343455	NM_177438.2	706																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180939	32180940	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1271	122	327	1	ENST00000375023.3:c.2410_2411delinsAA	p.Gly804Lys	p.G804K	ENST00000375023	NM_004557.3	804	GGa/AAa																																																																														
SYK	6850	MSKCC	GRCh37	9	93639903	93639904	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			769	41	331	0	ENST00000375746.1:c.1232_1233delinsTT	p.Pro411Leu	p.P411L	ENST00000375746	NM_001174167.1	411	cCC/cTT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101027	41101028	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	212	340	0	ENST00000373198.4:c.1328_1329delinsTT	p.Thr443Ile	p.T443I	ENST00000373198	NM_133170.3	443	aCC/aTT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246816	10246817	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0008246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			637	175	275	0	ENST00000340748.4:c.4588_4589delinsTT	p.Pro1530Phe	p.P1530F	ENST00000340748		1530	CCc/TTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	215	236	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0008248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	231	476	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	220	238	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	220	238	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	220	238	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
BARD1	580	MSKCC	GRCh37	2	215646042	215646042	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs16852741		P-0008248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	141	481	1	ENST00000260947.4:c.556A>G	p.Ser186Gly	p.S186G	ENST00000260947	NM_000465.2	186	Agt/Ggt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628521	187628521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	328	594	0	ENST00000441802.2:c.2461G>T	p.Glu821Ter	p.E821*	ENST00000441802	NM_005245.3	821	Gag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671702	30671702	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0008248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	133	479	0	ENST00000376406.3:c.5258C>G	p.Ser1753Ter	p.S1753*	ENST00000376406	NM_014641.2	1753	tCa/tGa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979549	7979549	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	188	508	0	ENST00000319144.4:c.1476C>A	p.Asp492Glu	p.D492E	ENST00000319144	NM_001139.2	492	gaC/gaA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16040688	16040688	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	168	533	0	ENST00000268712.3:c.1446G>C	p.Lys482Asn	p.K482N	ENST00000268712	NM_006311.3	482	aaG/aaC																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022583	31022583	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	189	460	0	ENST00000375687.4:c.2068G>C	p.Asp690His	p.D690H	ENST00000375687	NM_015338.5	690	Gat/Cat																																																																														
FLT1	2321	MSKCC	GRCh37	13	28913374	28913374	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	206	607	0	ENST00000282397.4:c.2419del	p.Asp807MetfsTer54	p.D807Mfs*54	ENST00000282397	NM_002019.4	807	Gat/at																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139397656	139397656	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	266	368	0	ENST00000277541.6:c.5145del	p.Tyr1716ThrfsTer82	p.Y1716Tfs*82	ENST00000277541	NM_017617.3	1715	ccC/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	54	253	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	299	368	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6414399	6414399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	112	241	0	ENST00000356142.4:c.33C>A	p.Asp11Glu	p.D11E	ENST00000356142	NM_018890.3	11	gaC/gaA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	46	229	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	46	229	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	46	229	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651893	36651894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	45	248	0	ENST00000244741.5:c.19dup	p.Asp7GlyfsTer29	p.D7Gfs*29	ENST00000244741	NM_000389.4	5	-/G																																																																														
RAD50	10111	MSKCC	GRCh37	5	131927016	131927016	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	44	463	0	ENST00000265335.6:c.1553T>A	p.Leu518Gln	p.L518Q	ENST00000265335		518	cTg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0008311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	48	323	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	62	258	1				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36651906	36651906	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	67	389	0	ENST00000244741.5:c.28C>T	p.Gln10Ter	p.Q10*	ENST00000244741	NM_000389.4	10	Cag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039844	47039844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	10	264	0	ENST00000329236.7:c.953G>A	p.Arg318His	p.R318H	ENST00000329236	NM_001204466.1	318	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089676	27089676	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	39	500	0	ENST00000324856.7:c.2632C>T	p.Gln878Ter	p.Q878*	ENST00000324856	NM_006015.4	878	Cag/Tag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164103	47164103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	23	439	0	ENST00000409792.3:c.2023G>A	p.Gly675Arg	p.G675R	ENST00000409792	NM_014159.6	675	Gga/Aga																																																																														
RAD50	10111	MSKCC	GRCh37	5	131944830	131944830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	10	403	2	ENST00000265335.6:c.2851G>T	p.Val951Phe	p.V951F	ENST00000265335		951	Gtt/Ttt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	406298	406298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	52	650	0	ENST00000399788.2:c.4143C>G	p.Ile1381Met	p.I1381M	ENST00000399788	NM_001042603.1	1381	atC/atG																																																																														
RAD51	5888	MSKCC	GRCh37	15	41011093	41011093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	62	676	0	ENST00000267868.3:c.526G>C	p.Glu176Gln	p.E176Q	ENST00000267868	NM_002875.4	176	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	325	435	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	120	382	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	78	448	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012474	29012474	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	131	340	1	ENST00000282397.4:c.397A>T	p.Arg133Ter	p.R133*	ENST00000282397	NM_002019.4	133	Aga/Tga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554008	63554008	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199798353		P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	364	460	0	ENST00000307078.5:c.731C>T	p.Ser244Leu	p.S244L	ENST00000307078	NM_004655.3	244	tCg/tTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	55	231	0				ENST00000310581	NM_198253.2																																																																																
CASP8	841	MSKCC	GRCh37	2	202149778	202149778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	117	506	0	ENST00000358485.4:c.1219C>T	p.Leu407Phe	p.L407F	ENST00000358485	NM_001080125.1	407	Ctt/Ttt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259389	89259389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	221	639	1	ENST00000336596.2:c.533G>A	p.Gly178Glu	p.G178E	ENST00000336596	NM_005233.5	178	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112116491	112116491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	88	325	0	ENST00000257430.4:c.536C>T	p.Ser179Phe	p.S179F	ENST00000257430	NM_000038.5	179	tCc/tTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272521	11272521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	107	322	0	ENST00000361445.4:c.3409G>A	p.Glu1137Lys	p.E1137K	ENST00000361445	NM_004958.3	1137	Gag/Aag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78432421	78432421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	122	533	0	ENST00000370768.2:c.430C>T	p.Pro144Ser	p.P144S	ENST00000370768	NM_003902.3	144	Cca/Tca																																																																														
AKT3	10000	MSKCC	GRCh37	1	243708900	243708900	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs12083401		P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	58	370	0	ENST00000263826.5:c.1164-1G>A		p.X388_splice	ENST00000263826	NM_005465.4	388																																																																															
CASP8	841	MSKCC	GRCh37	2	202151208	202151208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	120	485	0	ENST00000358485.4:c.1508C>T	p.Thr503Ile	p.T503I	ENST00000358485	NM_001080125.1	503	aCt/aTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259488	89259488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	169	469	0	ENST00000336596.2:c.632T>A	p.Met211Lys	p.M211K	ENST00000336596	NM_005233.5	211	aTg/aAg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808989	1808989	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	50	206	0	ENST00000260795.2:c.2421A>G	p.Ter807TrpextTer101	p.*807Wext*101	ENST00000260795		807	tgA/tgG																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213822	66213822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	111	625	0	ENST00000273854.3:c.2608G>A	p.Glu870Lys	p.E870K	ENST00000273854	NM_004439.5	870	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964429	93964429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	123	713	0	ENST00000369303.4:c.2468G>A	p.Gly823Glu	p.G823E	ENST00000369303	NM_004440.3	823	gGa/gAa																																																																														
HGF	3082	MSKCC	GRCh37	7	81358987	81358987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	111	537	1	ENST00000222390.5:c.974C>T	p.Pro325Leu	p.P325L	ENST00000222390	NM_000601.4	325	cCa/cTa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508316	106508316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	48	133	0	ENST00000359195.3:c.310G>A	p.Gly104Arg	p.G104R	ENST00000359195	NM_002649.2	104	Ggg/Agg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545750	106545750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	114	503	0	ENST00000359195.3:c.3227G>A	p.Arg1076Lys	p.R1076K	ENST00000359195	NM_002649.2	1076	aGa/aAa																																																																														
SMO	6608	MSKCC	GRCh37	7	128846173	128846173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	178	516	0	ENST00000249373.3:c.1103C>T	p.Pro368Leu	p.P368L	ENST00000249373	NM_005631.4	368	cCc/cTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151855959	151855959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	123	455	0	ENST00000262189.6:c.11659C>T	p.His3887Tyr	p.H3887Y	ENST00000262189	NM_170606.2	3887	Cac/Tac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341168	8341168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	265	541	0	ENST00000356435.5:c.5048C>T	p.Ser1683Phe	p.S1683F	ENST00000356435		1683	tCc/tTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504347	8504347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	77	409	0	ENST00000356435.5:c.1736G>A	p.Ser579Asn	p.S579N	ENST00000356435		579	aGc/aAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518130	8518130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	276	362	1	ENST00000356435.5:c.1261C>T	p.Pro421Ser	p.P421S	ENST00000356435		421	Ccg/Tcg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908883	101908883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	293	429	0	ENST00000374994.4:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000374994	NM_004612.2	416	tCc/tTc																																																																														
RET	5979	MSKCC	GRCh37	10	43607664	43607664	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	105	406	0	ENST00000355710.3:c.1640A>G	p.Asp547Gly	p.D547G	ENST00000355710	NM_020975.4	547	gAt/gGt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243279	123243279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	136	523	1	ENST00000358487.5:c.2234C>T	p.Ser745Phe	p.S745F	ENST00000358487	NM_000141.4	745	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118359373	118359373	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	119	444	0	ENST00000534358.1:c.4377T>G	p.Cys1459Trp	p.C1459W	ENST00000534358	NM_005933.3	1459	tgT/tgG																																																																														
RAD52	5893	MSKCC	GRCh37	12	1036339	1036339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	210	493	2	ENST00000358495.3:c.439G>A	p.Val147Met	p.V147M	ENST00000358495	NM_134424.2	147	Gtg/Atg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906615	32906615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	88	455	1	ENST00000380152.3:c.1000C>T	p.His334Tyr	p.H334Y	ENST00000380152		334	Cat/Tat																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515276	103515276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	78	430	1	ENST00000355739.4:c.1777C>T	p.Pro593Ser	p.P593S	ENST00000355739	NM_000123.3	593	Cct/Tct																																																																														
MGA	23269	MSKCC	GRCh37	15	42058340	42058340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	72	693	0	ENST00000219905.7:c.8060C>T	p.Thr2687Ile	p.T2687I	ENST00000219905	NM_001164273.1	2687	aCc/aTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819709	81819709	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1201	245	644	4	ENST00000359376.3:c.115G>T	p.Glu39Ter	p.E39*	ENST00000359376	NM_002661.3	39	Gag/Tag																																																																														
RARA	5914	MSKCC	GRCh37	17	38512473	38512473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	256	338	0	ENST00000254066.5:c.1384C>T	p.Pro462Ser	p.P462S	ENST00000254066	NM_000964.3	462	Ccg/Tcg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980867	40980867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	190	422	0	ENST00000373198.4:c.1619G>A	p.Gly540Glu	p.G540E	ENST00000373198	NM_133170.3	540	gGg/gAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980879	40980879	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs192708116		P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	201	387	1	ENST00000373198.4:c.1607C>T	p.Ser536Leu	p.S536L	ENST00000373198	NM_133170.3	536	tCg/tTg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262806	46262806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	257	714	1	ENST00000371998.3:c.979C>T	p.His327Tyr	p.H327Y	ENST00000371998		327	Cat/Tat																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45651307	45651307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	163	633	0	ENST00000407780.3:c.718G>A	p.Asp240Asn	p.D240N	ENST00000407780	NM_001283052.1	240	Gac/Aac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413049	139413050	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	457	395	1	ENST00000277541.6:c.1092_1093delinsTT	p.Arg365Cys	p.R365C	ENST00000277541	NM_017617.3	364	ggCCgc/ggTTgc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376145	118376147	+	missense_variant	Missense_Mutation	ONP	ATC	ATC	TTT			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	51	351	0	ENST00000534358.1:c.9538_9540delinsTTT	p.Ile3180Phe	p.I3180F	ENST00000534358	NM_005933.3	3180	ATC/TTT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230693	+	frameshift_variant	Frame_Shift_Del	DEL	CGT	CGT	TG			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	119	618	0	ENST00000334344.6:c.940_942delinsTG	p.Arg314CysfsTer14	p.R314Cfs*14	ENST00000334344	NM_152641.2	314	CGT/TG																																																																														
NF1	4763	MSKCC	GRCh37	17	29562742	29562743	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	183	486	1	ENST00000358273.4:c.3822_3823delinsTA	p.Phe1275Ile	p.F1275I	ENST00000358273	NM_001042492.2	1274	ctCTtc/ctTAtc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554001	63554002	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	319	459	0	ENST00000307078.5:c.737_738delinsTT	p.Thr246Ile	p.T246I	ENST00000307078	NM_004655.3	246	aCC/aTT																																																																														
STK11	6794	MSKCC	GRCh37	19	1220608	1220609	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	147	478	0	ENST00000326873.7:c.626_627delinsTT	p.Thr209Ile	p.T209I	ENST00000326873	NM_000455.4	209	aCC/aTT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	69	378	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	46	355	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10270693	10270693	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0008433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	56	487	1	ENST00000340748.4:c.1041+1G>T		p.X347_splice	ENST00000340748		347																																																																															
BRCA2	675	MSKCC	GRCh37	13	32914933	32914934	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs80359589		P-0008433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	104	660	0	ENST00000380152.3:c.6443_6444del	p.Ser2148TyrfsTer2	p.S2148Yfs*2	ENST00000380152		2147	caCTct/cact																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	33	314	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	61	457	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532627	63532627	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs74006838		P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	65	341	1	ENST00000307078.5:c.1952C>T	p.Ser651Leu	p.S651L	ENST00000307078	NM_004655.3	651	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	58	494	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719635	190719635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	19	426	0	ENST00000441310.2:c.1637G>A	p.Cys546Tyr	p.C546Y	ENST00000441310	NM_000534.4	546	tGt/tAt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663157	227663157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	76	530	0	ENST00000305123.5:c.298G>A	p.Glu100Lys	p.E100K	ENST00000305123	NM_005544.2	100	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112111384	112111384	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	20	510	1	ENST00000257430.4:c.481C>T	p.Gln161Ter	p.Q161*	ENST00000257430	NM_000038.5	161	Caa/Taa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637822	176637822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	49	590	1	ENST00000439151.2:c.2422G>A	p.Glu808Lys	p.E808K	ENST00000439151	NM_022455.4	808	Gag/Aag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913197	32913197	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	59	858	0	ENST00000380152.3:c.4705T>A	p.Tyr1569Asn	p.Y1569N	ENST00000380152		1569	Tac/Aac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346892	89346892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	48	363	0	ENST00000301030.4:c.6058G>A	p.Ala2020Thr	p.A2020T	ENST00000301030	NM_001256183.1	2020	Gcc/Acc																																																																														
NF2	4771	MSKCC	GRCh37	22	30057288	30057288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	68	500	0	ENST00000338641.4:c.770C>A	p.Pro257Gln	p.P257Q	ENST00000338641	NM_000268.3	257	cCg/cAg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060409	38061028	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	TTGCACTGGGGGAAAGGTTGTGCATGAAAAATGAAATAAAAATAGTTGTTGGGATTTTATTATGCTGTTGACGGTTTGGTTTGTGTGGTTTTGTTTGCTGTTGATTTTTTCTCTCTTGCTACCAGCATGGCTATGCCAGACAAACCCCCCAGTCCCGGGAGCTAGGAAGTGTTTAGGACGGGTCTGGAATACACACCTTGGTAGTACGCCGGCTCCAGGGCTGAGGGCTCGATGGGGCTCCTGGTGGTCACCGAGGCGCTGCCTAGAGGCAGGCTGGCGGGCAACGTAGAGCCGTAAGGCGAGTATTGCAGTGCCTGTTCGTATGCCTTGAAGTCCAGCTTATGCTGCTGCTCCGAGGAGGACATGAGGTTGTTGATGGAGAACGGGTGGTTGAAGGAGTAGTGGGGGTCCCCTTTCAGGTGCAGCTGGGACTCGTGGGGTGCCAAGCCGTGTGCCGGGTGAGAGGCGGGCACAGAGGCCAGCGCCCCGGGCCCGGAGCTTATGGGGGGCGCAGTTGAGGAGGCTGGAGTCTTCAACTCCGAGGCGCCCCCTGTCGCCGTCGCCCCACTGTGGTCCAGAGTCTGGGGGCTGGCGGCGGGCCCGGGGGCCGGCGCGCCCTC	TTGCACTGGGGGAAAGGTTGTGCATGAAAAATGAAATAAAAATAGTTGTTGGGATTTTATTATGCTGTTGACGGTTTGGTTTGTGTGGTTTTGTTTGCTGTTGATTTTTTCTCTCTTGCTACCAGCATGGCTATGCCAGACAAACCCCCCAGTCCCGGGAGCTAGGAAGTGTTTAGGACGGGTCTGGAATACACACCTTGGTAGTACGCCGGCTCCAGGGCTGAGGGCTCGATGGGGCTCCTGGTGGTCACCGAGGCGCTGCCTAGAGGCAGGCTGGCGGGCAACGTAGAGCCGTAAGGCGAGTATTGCAGTGCCTGTTCGTATGCCTTGAAGTCCAGCTTATGCTGCTGCTCCGAGGAGGACATGAGGTTGTTGATGGAGAACGGGTGGTTGAAGGAGTAGTGGGGGTCCCCTTTCAGGTGCAGCTGGGACTCGTGGGGTGCCAAGCCGTGTGCCGGGTGAGAGGCGGGCACAGAGGCCAGCGCCCCGGGCCCGGAGCTTATGGGGGGCGCAGTTGAGGAGGCTGGAGTCTTCAACTCCGAGGCGCCCCCTGTCGCCGTCGCCCCACTGTGGTCCAGAGTCTGGGGGCTGGCGGCGGGCCCGGGGGCCGGCGCGCCCTC	-			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	19	59	0	ENST00000250448.2:c.961_*161delGAGGGCGCGCCGGCCCCCGGGCCCGCCGCCAGCCCCCAGACTCTGGACCACAGTGGGGCGACGGCGACAGGGGGCGCCTCGGAGTTGAAGACTCCAGCCTCCTCAACTGCGCCCCCCATAAGCTCCGGGCCCGGGGCGCTGGCCTCTGTGCCCGCCTCTCACCCGGCACACGGCTTGGCACCCCACGAGTCCCAGCTGCACCTGAAAGGGGACCCCCACTACTCCTTCAACCACCCGTTCTCCATCAACAACCTCATGTCCTCCTCGGAGCAGCAGCATAAGCTGGACTTCAAGGCATACGAACAGGCACTGCAATACTCGCCTTACGGCTCTACGTTGCCCGCCAGCCTGCCTCTAGGCAGCGCCTCGGTGACCACCAGGAGCCCCATCGAGCCCTCAGCCCTGGAGCCGGCGTACTACCAAGGTGTGTATTCCAGACCCGTCCTAAACACTTCCTAGCTCCCGGGACTGGGGGGTTTGTCTGGCATAGCCATGCTGGTAGCAAGAGAGAAAAAATCAACAGCAAACAAAACCACACAAACCAAACCGTCAACAGCATAATAAAATCCCAACAACTATTTTTATTTCATTTTTCATGCACAACCTTTCCCCCAGTGCAA		p.*321fs*	ENST00000250448	NM_004496.3	321																																																																															
NSD1	64324	MSKCC	GRCh37	5	176694589	176694593	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCC	TGCCC	-			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	36	553	0	ENST00000439151.2:c.5176_5180del	p.Pro1726CysfsTer5	p.P1726Cfs*5	ENST00000439151	NM_022455.4	1725	TGCCCt/t																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023270	27023274	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGG	GGCGG	-			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	53	290	0	ENST00000324856.7:c.376_380del	p.Gly126GlnfsTer272	p.G126Qfs*272	ENST00000324856	NM_006015.4	126	GGCGGc/c																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244510	41244511	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	27	646	0	ENST00000357654.3:c.3037_3038del	p.Glu1013AsnfsTer4	p.E1013Nfs*4	ENST00000357654	NM_007294.3	1013	GAa/a																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441312	52441328	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAGGTGGCGTGGCTC	GGGAGGTGGCGTGGCTC	-			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	74	549	0	ENST00000460680.1:c.442_458del	p.Glu148Ter	p.E148*	ENST00000460680	NM_004656.3	148	GAGCCACGCCACCTCCCt/t																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440884	52440885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	129	529	0	ENST00000460680.1:c.619dup	p.Arg207ProfsTer36	p.R207Pfs*36	ENST00000460680	NM_004656.3	207	cgg/cCgg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256687	19256688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	65	518	0	ENST00000162023.5:c.1025dup	p.Leu343ProfsTer?	p.L343Pfs*?	ENST00000162023		342	ctc/ctTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696608	176696619	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAGCTGAGA	GGCCAGCTGAGA	C			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	35	411	0	ENST00000439151.2:c.5309_5320delinsC	p.Trp1770SerfsTer12	p.W1770Sfs*12	ENST00000439151	NM_022455.4	1770	tGGCCAGCTGAGAtc/tCtc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867570	45867571	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0008439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	55	469	0	ENST00000391945.4:c.737_738delinsTT	p.Ser246Phe	p.S246F	ENST00000391945	NM_000400.3	246	tCC/tTT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874261	151874261	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0008470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	289	310	0	ENST00000262189.6:c.8277T>G	p.Tyr2759Ter	p.Y2759*	ENST00000262189	NM_170606.2	2759	taT/taG																																																																														
WT1	7490	MSKCC	GRCh37	11	32410657	32410657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	138	442	0	ENST00000332351.3:c.1501C>T	p.Arg501Cys	p.R501C	ENST00000332351	NM_024426.4	501	Cgc/Tgc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22221703	22221703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	51	128	0	ENST00000215832.6:c.28G>A	p.Gly10Ser	p.G10S	ENST00000215832	NM_002745.4	10	Ggc/Agc																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495642	72495662	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTACCTGGTGGAGGTGCCTT	AGTACCTGGTGGAGGTGCCTT	-			P-0008470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	52	247	0	ENST00000477973.2:c.408_423+5delAAGGCACCTCCACCAGGTACT		p.X136_splice	ENST00000477973	NM_012234.5	136																																																																															
MTOR	2475	MSKCC	GRCh37	1	11188989	11188989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	82	702	0	ENST00000361445.4:c.5734G>A	p.Asp1912Asn	p.D1912N	ENST00000361445	NM_004958.3	1912	Gat/Aat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259672	11259672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	81	472	0	ENST00000361445.4:c.4033C>T	p.Leu1345Phe	p.L1345F	ENST00000361445	NM_004958.3	1345	Ctc/Ttc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16245520	16245520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	234	584	0	ENST00000375759.3:c.1495G>A	p.Glu499Lys	p.E499K	ENST00000375759	NM_015001.2	499	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255809	16255809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	180	437	0	ENST00000375759.3:c.3074G>A	p.Arg1025Lys	p.R1025K	ENST00000375759	NM_015001.2	1025	aGa/aAa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933511	36933512	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	161	925	1	ENST00000361632.4:c.1775_1776delinsTT	p.Pro592Leu	p.P592L	ENST00000361632		592	cCC/cTT																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937232	36937232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	158	916	2	ENST00000361632.4:c.1087G>A	p.Glu363Lys	p.E363K	ENST00000361632		363	Gaa/Aaa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937938	36937938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	130	926	1	ENST00000361632.4:c.898G>A	p.Ala300Thr	p.A300T	ENST00000361632		300	Gcc/Acc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78435633	78435633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	206	644	1	ENST00000370768.2:c.187C>A	p.Gln63Lys	p.Q63K	ENST00000370768	NM_003902.3	63	Caa/Aaa																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166491	118166491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	147	488	0	ENST00000369448.3:c.1001C>T	p.Ser334Phe	p.S334F	ENST00000369448	NM_017709.3	334	tCc/tTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468429	120468429	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	104	262	0	ENST00000256646.2:c.4010T>A	p.Phe1337Tyr	p.F1337Y	ENST00000256646	NM_024408.3	1337	tTt/tAt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120471703	120471704	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	189	493	1	ENST00000256646.2:c.3787_3788delinsAA	p.Gly1263Lys	p.G1263K	ENST00000256646	NM_024408.3	1263	GGa/AAa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510184	120510184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	217	517	0	ENST00000256646.2:c.1325G>C	p.Cys442Ser	p.C442S	ENST00000256646	NM_024408.3	442	tGt/tCt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740171	162740171	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189206909		P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	227	587	0	ENST00000367921.3:c.1373G>A	p.Arg458His	p.R458H	ENST00000367921	NM_006182.2	458	cGc/cAc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193119485	193119485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	211	547	1	ENST00000367435.3:c.880G>A	p.Asp294Asn	p.D294N	ENST00000367435	NM_024529.4	294	Gat/Aat																																																																														
PARP1	142	MSKCC	GRCh37	1	226566868	226566868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	147	654	1	ENST00000366794.5:c.1720C>T	p.Leu574Phe	p.L574F	ENST00000366794	NM_001618.3	574	Ctt/Ttt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243708891	243708891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	147	458	0	ENST00000263826.5:c.1172G>A	p.Gly391Glu	p.G391E	ENST00000263826	NM_005465.4	391	gGa/gAa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243777040	243777040	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	135	457	1	ENST00000263826.5:c.629C>T	p.Ser210Phe	p.S210F	ENST00000263826	NM_005465.4	210	tCc/tTc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99160452	99160452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	113	503	0	ENST00000074304.5:c.931G>A	p.Asp311Asn	p.D311N	ENST00000074304	NM_001134224.1	311	Gac/Aac																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273304	198273304	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	102	386	0	ENST00000335508.6:c.906T>G	p.Asp302Glu	p.D302E	ENST00000335508	NM_012433.2	302	gaT/gaG																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285794	198285794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	171	417	0	ENST00000335508.6:c.259C>T	p.Pro87Ser	p.P87S	ENST00000335508	NM_012433.2	87	Cct/Tct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251614	212251614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	249	489	0	ENST00000342788.4:c.3445G>A	p.Gly1149Ser	p.G1149S	ENST00000342788	NM_005235.2	1149	Ggt/Agt																																																																														
BARD1	580	MSKCC	GRCh37	2	215609815	215609815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	288	699	0	ENST00000260947.4:c.1879G>T	p.Gly627Ter	p.G627*	ENST00000260947	NM_000465.2	627	Gga/Tga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084111	47084111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	153	559	1	ENST00000409792.3:c.7178C>T	p.Pro2393Leu	p.P2393L	ENST00000409792	NM_014159.6	2393	cCc/cTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588782	52588782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	162	523	0	ENST00000394830.3:c.4246C>T	p.Leu1416Phe	p.L1416F	ENST00000394830	NM_018313.4	1416	Ctt/Ttt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637657	52637657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	178	728	0	ENST00000394830.3:c.2659C>T	p.Leu887Phe	p.L887F	ENST00000394830	NM_018313.4	887	Ctt/Ttt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480383	89480383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	211	538	0	ENST00000336596.2:c.2220G>A	p.Met740Ile	p.M740I	ENST00000336596	NM_005233.5	740	atG/atA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498507	89498507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	216	496	0	ENST00000336596.2:c.2479G>A	p.Glu827Lys	p.E827K	ENST00000336596	NM_005233.5	827	Gag/Aag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499335	89499336	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	164	482	0	ENST00000336596.2:c.2505_2506delinsGA	p.Ala836Thr	p.A836T	ENST00000336596	NM_005233.5	835	aaAGct/aaGAct																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880912	134880912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	228	603	0	ENST00000398015.3:c.1475G>A	p.Arg492Lys	p.R492K	ENST00000398015	NM_004441.4	492	aGg/aAg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138426012	138426012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	279	591	0	ENST00000289153.2:c.1519C>T	p.Pro507Ser	p.P507S	ENST00000289153	NM_006219.2	507	Ccc/Tcc																																																																														
ATR	545	MSKCC	GRCh37	3	142279217	142279217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	174	607	0	ENST00000350721.4:c.1429C>T	p.Leu477Phe	p.L477F	ENST00000350721	NM_001184.3	477	Ctt/Ttt																																																																														
KIT	3815	MSKCC	GRCh37	4	55561794	55561794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	145	512	0	ENST00000288135.5:c.184G>A	p.Gly62Ser	p.G62S	ENST00000288135	NM_000222.2	62	Ggc/Agc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955556	55955556	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	174	847	0	ENST00000263923.4:c.3389A>C	p.Tyr1130Ser	p.Y1130S	ENST00000263923	NM_002253.2	1130	tAt/tCt																																																																														
KDR	3791	MSKCC	GRCh37	4	55984833	55984833	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	158	681	1	ENST00000263923.4:c.296G>T	p.Gly99Val	p.G99V	ENST00000263923	NM_002253.2	99	gGa/gTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213909	66213909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	192	580	0	ENST00000273854.3:c.2521C>T	p.Pro841Ser	p.P841S	ENST00000273854	NM_004439.5	841	Cca/Tca																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231698	66231698	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	238	614	0	ENST00000273854.3:c.2002A>C	p.Lys668Gln	p.K668Q	ENST00000273854	NM_004439.5	668	Aag/Cag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231707	66231707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	191	609	0	ENST00000273854.3:c.1993G>A	p.Glu665Lys	p.E665K	ENST00000273854	NM_004439.5	665	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106196229	106196229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	175	435	0	ENST00000380013.4:c.4562T>A	p.Val1521Asp	p.V1521D	ENST00000380013	NM_001127208.2	1521	gTc/gAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524771	187524771	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	197	498	0	ENST00000441802.2:c.10909G>T	p.Glu3637Ter	p.E3637*	ENST00000441802	NM_005245.3	3637	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	44	495	1				ENST00000310581	NM_198253.2																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56177752	56177752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	165	460	0	ENST00000399503.3:c.2725G>A	p.Glu909Lys	p.E909K	ENST00000399503	NM_005921.1	909	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112177491	112177491	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	148	487	0	ENST00000257430.4:c.6200A>T	p.Asn2067Ile	p.N2067I	ENST00000257430	NM_000038.5	2067	aAt/aTt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149436936	149436936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	106	587	0	ENST00000286301.3:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000286301	NM_005211.3	745	Gag/Aag																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158404	26158404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	166	414	0	ENST00000289316.2:c.7G>A	p.Glu3Lys	p.E3K	ENST00000289316	NM_138720.2	3	Gaa/Aaa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168916	32168916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	154	777	0	ENST00000375023.3:c.4117G>A	p.Glu1373Lys	p.E1373K	ENST00000375023	NM_004557.3	1373	Gag/Aag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172106	32172106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	295	741	0	ENST00000375023.3:c.2926C>T	p.Pro976Ser	p.P976S	ENST00000375023	NM_004557.3	976	Ccc/Tcc																																																																														
FYN	2534	MSKCC	GRCh37	6	112029210	112029210	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	174	786	0	ENST00000368678.4:c.358T>A	p.Trp120Arg	p.W120R	ENST00000368678		120	Tgg/Agg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609658	117609658	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	128	430	0	ENST00000368508.3:c.7041T>A	p.Asp2347Glu	p.D2347E	ENST00000368508	NM_002944.2	2347	gaT/gaA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642495	117642495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs9489124		P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	284	911	2	ENST00000368508.3:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000368508	NM_002944.2	1902	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662757	117662757	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	144	331	0	ENST00000368508.3:c.4708T>A	p.Ser1570Thr	p.S1570T	ENST00000368508	NM_002944.2	1570	Tca/Aca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683798	117683798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	168	455	1	ENST00000368508.3:c.3349G>A	p.Gly1117Ser	p.G1117S	ENST00000368508	NM_002944.2	1117	Ggc/Agc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710582	117710582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	216	468	0	ENST00000368508.3:c.1690C>T	p.Leu564Phe	p.L564F	ENST00000368508	NM_002944.2	564	Ctt/Ttt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005321	150005321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	187	773	0	ENST00000253339.5:c.904C>T	p.Pro302Ser	p.P302S	ENST00000253339		302	Cca/Tca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979406	2979406	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	1261	568	0	ENST00000396946.4:c.841C>T	p.Gln281Ter	p.Q281*	ENST00000396946	NM_032415.4	281	Cag/Tag																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971172	13971172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	2171	442	0	ENST00000405192.2:c.757C>T	p.Pro253Ser	p.P253S	ENST00000405192	NM_001163147.1	253	Cct/Tct																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520000	106520000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	134	608	0	ENST00000359195.3:c.2428C>T	p.Pro810Ser	p.P810S	ENST00000359195	NM_002649.2	810	Cca/Tca																																																																														
SMO	6608	MSKCC	GRCh37	7	128845452	128845452	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	102	495	0	ENST00000249373.3:c.749C>T	p.Ala250Val	p.A250V	ENST00000249373	NM_005631.4	250	gCc/gTc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511121	148511121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	116	447	0	ENST00000320356.2:c.1781G>A	p.Gly594Glu	p.G594E	ENST00000320356	NM_004456.4	594	gGa/gAa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738652	145738653	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	62	312	0	ENST00000428558.2:c.2411_2412delinsAA	p.Arg804Gln	p.R804Q	ENST00000428558	NM_004260.3	804	cGG/cAA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	229	787	1	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	229	787	1	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391189	139391190	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	59	371	0	ENST00000277541.6:c.7001_7002delinsTT	p.Pro2334Leu	p.P2334L	ENST00000277541	NM_017617.3	2334	cCC/cTT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396940	139396940	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	14	177	0	ENST00000277541.6:c.5168G>A	p.Ser1723Asn	p.S1723N	ENST00000277541	NM_017617.3	1723	aGt/aAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396941	139396941	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	14	175	0	ENST00000277541.6:c.5168-1G>A		p.X1723_splice	ENST00000277541	NM_017617.3	1723																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409853	139409853	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	101	371	0	ENST00000277541.6:c.1904-1G>A		p.X635_splice	ENST00000277541	NM_017617.3	635																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139802672	139802672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	62	554	1	ENST00000247668.2:c.517G>A	p.Ala173Thr	p.A173T	ENST00000247668	NM_021138.3	173	Gca/Aca																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106076	8106076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	96	343	0	ENST00000346208.3:c.896C>T	p.Pro299Leu	p.P299L	ENST00000346208		299	cCc/cTc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850891	63850891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	177	432	0	ENST00000279873.7:c.1669C>T	p.Pro557Ser	p.P557S	ENST00000279873	NM_032199.2	557	Cct/Tct																																																																														
TET1	80312	MSKCC	GRCh37	10	70451027	70451027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	109	380	0	ENST00000373644.4:c.5867C>T	p.Pro1956Leu	p.P1956L	ENST00000373644	NM_030625.2	1956	cCa/cTa																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047156	77047157	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	199	676	0	ENST00000356341.3:c.1387_1388delinsAT	p.Pro463Ile	p.P463I	ENST00000356341	NM_002576.4	463	CCa/ATa																																																																														
PGR	5241	MSKCC	GRCh37	11	100909900	100909901	+	missense_variant	Missense_Mutation	DNP	AT	AT	GA			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	175	742	0	ENST00000325455.5:c.2748_2749delinsTC	p.Gln916His	p.Q916H	ENST00000325455	NM_001202474.3	916	caATta/caTCta																																																																														
PGR	5241	MSKCC	GRCh37	11	100998271	100998271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	93	338	0	ENST00000325455.5:c.1531C>T	p.Leu511Phe	p.L511F	ENST00000325455	NM_001202474.3	511	Ctc/Ttc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118366590	118366590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	150	477	1	ENST00000534358.1:c.5539C>T	p.Pro1847Ser	p.P1847S	ENST00000534358	NM_005933.3	1847	Cct/Tct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373911	118373911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	178	696	0	ENST00000534358.1:c.7304C>T	p.Ser2435Phe	p.S2435F	ENST00000534358	NM_005933.3	2435	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793456	18793456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	194	670	2	ENST00000266497.5:c.4153C>T	p.Pro1385Ser	p.P1385S	ENST00000266497		1385	Cca/Tca																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944944	31944944	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144139961		P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	94	479	0	ENST00000340398.3:c.157C>T	p.Arg53Cys	p.R53C	ENST00000340398	NM_001013699.2	53	Cgt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230439	46230440	+	splice_donor_variant	Splice_Site	DNP	GT	GT	AC			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	183	480	1	ENST00000334344.6:c.772+1_772+2inv		p.X258_splice	ENST00000334344	NM_152641.2	258																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427920	49427920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	198	743	1	ENST00000301067.7:c.10670C>T	p.Pro3557Leu	p.P3557L	ENST00000301067	NM_003482.3	3557	cCa/cTa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493718	56493718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	200	664	0	ENST00000267101.3:c.3034G>A	p.Asp1012Asn	p.D1012N	ENST00000267101	NM_001982.3	1012	Gac/Aac																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495026	56495026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	144	469	0	ENST00000267101.3:c.3383G>A	p.Gly1128Glu	p.G1128E	ENST00000267101	NM_001982.3	1128	gGa/gAa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563128	21563128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	96	508	0	ENST00000382592.4:c.791C>T	p.Pro264Leu	p.P264L	ENST00000382592	NM_014572.2	264	cCc/cTc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134835	41134835	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	285	989	2	ENST00000379561.5:c.793A>G	p.Lys265Glu	p.K265E	ENST00000379561	NM_002015.3	265	Aag/Gag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251244	99251244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	200	585	1	ENST00000268035.6:c.548C>T	p.Pro183Leu	p.P183L	ENST00000268035	NM_000875.3	183	cCa/cTa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2106705	2106705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	144	702	0	ENST00000219476.3:c.709C>T	p.Pro237Ser	p.P237S	ENST00000219476	NM_000548.3	237	Ccg/Tcg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807367	3807367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	111	443	0	ENST00000262367.5:c.3620C>T	p.Ser1207Phe	p.S1207F	ENST00000262367	NM_004380.2	1207	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858003	9858003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	154	648	0	ENST00000330684.3:c.3398C>T	p.Pro1133Leu	p.P1133L	ENST00000330684	NM_001134407.1	1133	cCc/cTc																																																																														
CBFB	865	MSKCC	GRCh37	16	67100651	67100651	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	199	747	2	ENST00000412916.2:c.349C>T	p.Gln117Ter	p.Q117*	ENST00000412916		117	Caa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992399	72992399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	153	1111	0	ENST00000268489.5:c.1646C>T	p.Ser549Phe	p.S549F	ENST00000268489	NM_006885.3	549	tCt/tTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81957138	81957138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	196	775	1	ENST00000359376.3:c.2356G>A	p.Asp786Asn	p.D786N	ENST00000359376	NM_002661.3	786	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577085	+	missense_variant	Missense_Mutation	ONP	CCTC	CCTC	TCTT			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	278	666	1	ENST00000269305.4:c.853_856delinsAAGA	p.Glu285_Glu286delinsLysLys	p.E285_E286delinsKK	ENST00000269305	NM_001126112.2	285	GAGGaa/AAGAaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579418	7579418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	78	473	0	ENST00000269305.4:c.269C>T	p.Ser90Phe	p.S90F	ENST00000269305	NM_001126112.2	90	tCc/tTc																																																																														
RARA	5914	MSKCC	GRCh37	17	38487485	38487485	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	84	476	0	ENST00000254066.5:c.15C>G	p.Ser5Arg	p.S5R	ENST00000254066	NM_000964.3	5	agC/agG																																																																														
STK11	6794	MSKCC	GRCh37	19	1223169	1223169	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	84	410	0	ENST00000326873.7:c.1106C>T	p.Pro369Leu	p.P369L	ENST00000326873	NM_000455.4	369	cCc/cTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210743	5210743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	90	583	0	ENST00000357368.4:c.5308G>A	p.Glu1770Lys	p.E1770K	ENST00000357368	NM_002850.3	1770	Gag/Aag																																																																														
INSR	3643	MSKCC	GRCh37	19	7267773	7267773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	67	391	0	ENST00000302850.5:c.235C>T	p.Pro79Ser	p.P79S	ENST00000302850	NM_000208.2	79	Ccc/Tcc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281227	15281227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	83	627	0	ENST00000263388.2:c.5029C>T	p.Pro1677Ser	p.P1677S	ENST00000263388	NM_000435.2	1677	Cct/Tct																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289677	15289677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138092938		P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	92	674	1	ENST00000263388.2:c.3794C>T	p.Pro1265Leu	p.P1265L	ENST00000263388	NM_000435.2	1265	cCg/cTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296150	15296150	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	63	562	0	ENST00000263388.2:c.2214T>A	p.Cys738Ter	p.C738*	ENST00000263388	NM_000435.2	738	tgT/tgA																																																																														
CIC	23152	MSKCC	GRCh37	19	42796963	42796963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	139	613	0	ENST00000575354.2:c.3421C>T	p.Pro1141Ser	p.P1141S	ENST00000575354	NM_015125.3	1141	Cct/Tct																																																																														
CIC	23152	MSKCC	GRCh37	19	42799311	42799311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	15	151	0	ENST00000575354.2:c.4795C>T	p.Pro1599Ser	p.P1599S	ENST00000575354	NM_015125.3	1599	Cca/Tca																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867755	45867756	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	148	666	0	ENST00000391945.4:c.644_645delinsTT	p.Pro215Leu	p.P215L	ENST00000391945	NM_000400.3	215	cCC/cTT																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560894	9560894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	190	674	0	ENST00000353224.5:c.888G>A	p.Met296Ile	p.M296I	ENST00000353224	NM_177990.2	296	atG/atA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560902	9560902	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	171	640	1	ENST00000353224.5:c.880G>T	p.Glu294Ter	p.E294*	ENST00000353224	NM_177990.2	294	Gaa/Taa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023751	31023751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	103	488	0	ENST00000375687.4:c.3236C>T	p.Ser1079Phe	p.S1079F	ENST00000375687	NM_015338.5	1079	tCc/tTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41523617	41523617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	162	609	0	ENST00000263253.7:c.1033C>T	p.Leu345Phe	p.L345F	ENST00000263253	NM_001429.3	345	Ctt/Ttt																																																																														
EP300	2033	MSKCC	GRCh37	22	41574622	41574622	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144787962		P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	175	842	0	ENST00000263253.7:c.6907C>T	p.Leu2303Phe	p.L2303F	ENST00000263253	NM_001429.3	2303	Ctc/Ttc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932524	39932524	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	102	325	0	ENST00000378444.4:c.2075T>G	p.Phe692Cys	p.F692C	ENST00000378444	NM_001123385.1	692	tTt/tGt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120465387	120465397	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAAGACTTT	AGAAAGACTTT	-			P-0008480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	126	383	0	ENST00000256646.2:c.4864_4874del	p.Lys1622GlyfsTer3	p.K1622Gfs*3	ENST00000256646	NM_024408.3	1622	AAAGTCTTTCTg/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	87	235	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0008528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	210	283	0				ENST00000310581	NM_198253.2																																																																																
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	128	281	0	ENST00000281708.4:c.1436G>C	p.Arg479Pro	p.R479P	ENST00000281708	NM_033632.3	479	cGa/cCa																																																																														
POLE	5426	MSKCC	GRCh37	12	133220437	133220437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	207	355	1	ENST00000320574.5:c.4276G>A	p.Val1426Ile	p.V1426I	ENST00000320574	NM_006231.2	1426	Gta/Ata																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631294	176631294	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0008528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	224	522	1	ENST00000439151.2:c.1236+1G>T		p.X412_splice	ENST00000439151	NM_022455.4	412																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435896	49435896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	367	595	0	ENST00000301067.7:c.6085C>T	p.Pro2029Ser	p.P2029S	ENST00000301067	NM_003482.3	2029	Cct/Tct																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480404	56480404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	221	390	0	ENST00000267101.3:c.511G>A	p.Asp171Asn	p.D171N	ENST00000267101	NM_001982.3	171	Gat/Aat																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480410	56480410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	212	388	0	ENST00000267101.3:c.517G>A	p.Glu173Lys	p.E173K	ENST00000267101	NM_001982.3	173	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777933	3777933	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2045	445	734	0	ENST00000262367.5:c.7115C>G	p.Ser2372Trp	p.S2372W	ENST00000262367	NM_004380.2	2372	tCg/tGg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			883	192	428	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			368	67	267	0				ENST00000310581	NM_198253.2																																																																																
ASXL1	171023	MSKCC	GRCh37	20	31023598	31023598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200702600		P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			782	189	545	0	ENST00000375687.4:c.3083C>T	p.Ser1028Leu	p.S1028L	ENST00000375687	NM_015338.5	1028	tCg/tTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7143018	7143018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			497	100	291	0	ENST00000302850.5:c.2351C>T	p.Ser784Phe	p.S784F	ENST00000302850	NM_000208.2	784	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			751	357	360	0	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651115	206651115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			815	168	482	1	ENST00000367120.3:c.725C>T	p.Pro242Leu	p.P242L	ENST00000367120	NM_014002.3	242	cCg/cTg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467675	50467675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759124417		P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			639	116	352	0	ENST00000331340.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000331340	NM_006060.4	304	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718277	117718277	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			349	154	235	0	ENST00000368508.3:c.580C>T	p.Pro194Ser	p.P194S	ENST00000368508	NM_002944.2	194	Cct/Tct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			194	42	136	0	ENST00000304494.5:c.188T>A	p.Leu63Gln	p.L63Q	ENST00000304494	NM_000077.4	63	cTg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			194	42	136	0	ENST00000304494.5:c.188T>A	p.Leu63Gln	p.L63Q	ENST00000304494	NM_000077.4	63	cTg/cAg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146527	185146527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35961174		P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			614	148	355	1	ENST00000265026.3:c.158G>A	p.Arg53Gln	p.R53Q	ENST00000265026	NM_004721.4	53	cGa/cAa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560894	9560894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			843	159	447	0	ENST00000353224.5:c.888G>A	p.Met296Ile	p.M296I	ENST00000353224	NM_177990.2	296	atG/atA																																																																														
STK40	83931	MSKCC	GRCh37	1	36809757	36809757	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			539	314	335	0	ENST00000373129.3:c.848T>C	p.Phe283Ser	p.F283S	ENST00000373129	NM_032017.1	283	tTc/tCc																																																																														
MPL	4352	MSKCC	GRCh37	1	43804262	43804262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			779	399	428	0	ENST00000372470.3:c.262G>A	p.Gly88Arg	p.G88R	ENST00000372470	NM_005373.2	88	Gga/Aga																																																																														
FH	2271	MSKCC	GRCh37	1	241665789	241665789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			913	326	437	0	ENST00000366560.3:c.1190G>A	p.Gly397Glu	p.G397E	ENST00000366560	NM_000143.3	397	gGa/gAa																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881467	111881467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			701	127	328	1	ENST00000393256.3:c.145G>A	p.Gly49Arg	p.G49R	ENST00000393256	NM_006538.4	49	Gga/Aga																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873426	136873426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1317	584	807	0	ENST00000241393.3:c.72G>A	p.Met24Ile	p.M24I	ENST00000241393	NM_003467.2	24	atG/atA																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662133	227662133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			701	148	450	0	ENST00000305123.5:c.1322C>T	p.Ser441Phe	p.S441F	ENST00000305123	NM_005544.2	441	tCc/tTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52662960	52662960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			863	185	376	0	ENST00000394830.3:c.1393C>T	p.Pro465Ser	p.P465S	ENST00000394830	NM_018313.4	465	Ccc/Tcc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71015158	71015158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			708	142	359	0	ENST00000318789.4:c.1772G>A	p.Gly591Glu	p.G591E	ENST00000318789	NM_032682.5	591	gGa/gAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163765	32163765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			552	129	310	0	ENST00000375023.3:c.5461G>A	p.Gly1821Arg	p.G1821R	ENST00000375023	NM_004557.3	1821	Ggg/Agg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724395	117724395	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			525	243	367	0	ENST00000368508.3:c.484A>C	p.Thr162Pro	p.T162P	ENST00000368508	NM_002944.2	162	Act/Cct																																																																														
MET	4233	MSKCC	GRCh37	7	116397761	116397761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			877	184	517	0	ENST00000397752.3:c.2035G>A	p.Gly679Arg	p.G679R	ENST00000397752	NM_000245.2	679	Gga/Aga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152027719	152027719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	235	602	1	ENST00000262189.6:c.356C>T	p.Ser119Phe	p.S119F	ENST00000262189	NM_170606.2	119	tCc/tTc																																																																														
PGR	5241	MSKCC	GRCh37	11	100922301	100922301	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			871	185	464	0	ENST00000325455.5:c.2213-2A>G		p.X738_splice	ENST00000325455	NM_001202474.3	738																																																																															
BIRC3	330	MSKCC	GRCh37	11	102199653	102199653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			631	101	338	0	ENST00000263464.3:c.1058G>A	p.Gly353Glu	p.G353E	ENST00000263464	NM_001165.4	353	gGa/gAa																																																																														
CBL	867	MSKCC	GRCh37	11	119149260	119149260	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	240	503	0	ENST00000264033.4:c.1268T>A	p.Ile423Asn	p.I423N	ENST00000264033	NM_005188.3	423	aTt/aAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658340	18658340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			611	106	375	0	ENST00000266497.5:c.3145C>T	p.His1049Tyr	p.H1049Y	ENST00000266497		1049	Cat/Tat																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431337	121431337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			436	77	245	0	ENST00000257555.6:c.541G>A	p.Gly181Arg	p.G181R	ENST00000257555		181	Ggg/Agg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549277	21549277	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	251	641	1	ENST00000382592.4:c.2999C>A	p.Ser1000Ter	p.S1000*	ENST00000382592	NM_014572.2	1000	tCg/tAg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240226	41240226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			209	64	138	1	ENST00000379561.5:c.124C>T	p.Pro42Ser	p.P42S	ENST00000379561	NM_002015.3	42	Ccg/Tcg																																																																														
RB1	5925	MSKCC	GRCh37	13	48955446	48955446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			670	161	327	0	ENST00000267163.4:c.1562T>C	p.Leu521Pro	p.L521P	ENST00000267163	NM_000321.2	521	cTt/cCt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779076	3779076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			384	100	273	1	ENST00000262367.5:c.5972C>T	p.Pro1991Leu	p.P1991L	ENST00000262367	NM_004380.2	1991	cCg/cTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347176	89347176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			757	176	610	1	ENST00000301030.4:c.5774C>T	p.Pro1925Leu	p.P1925L	ENST00000301030	NM_001256183.1	1925	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29657450	29657450	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62070718		P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			666	366	360	0	ENST00000358273.4:c.5746G>A	p.Ala1916Thr	p.A1916T	ENST00000358273	NM_001042492.2	1916	Gca/Aca																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428227	33428227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			878	116	395	0	ENST00000335858.7:c.560C>T	p.Ser187Phe	p.S187F	ENST00000335858	NM_133629.2	187	tCc/tTc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627971	37627971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			829	416	501	0	ENST00000447079.4:c.1886C>T	p.Pro629Leu	p.P629L	ENST00000447079	NM_015083.1	629	cCt/cTt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45871950	45871950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			785	187	420	0	ENST00000391945.4:c.298G>A	p.Glu100Lys	p.E100K	ENST00000391945	NM_000400.3	100	Gag/Aag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561130	9561130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			560	125	338	0	ENST00000353224.5:c.652G>A	p.Glu218Lys	p.E218K	ENST00000353224	NM_177990.2	218	Gag/Aag																																																																														
ERG	2078	MSKCC	GRCh37	21	39817402	39817402	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			741	178	334	0	ENST00000288319.7:c.161A>C	p.Gln54Pro	p.Q54P	ENST00000288319	NM_182918.3	54	cAg/cCg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911535	39911535	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140145812		P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			973	228	586	0	ENST00000378444.4:c.5095C>T	p.Arg1699Trp	p.R1699W	ENST00000378444	NM_001123385.1	1699	Cgg/Tgg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044701	47044701	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			748	205	561	2	ENST00000329236.7:c.1867G>A	p.Gly623Arg	p.G623R	ENST00000329236	NM_001204466.1	623	Gga/Aga																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649619	48649619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			880	208	669	0	ENST00000376670.3:c.103C>T	p.Pro35Ser	p.P35S	ENST00000376670	NM_002049.3	35	Ccc/Tcc																																																																														
AR	367	MSKCC	GRCh37	X	66765835	66765835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			824	166	553	1	ENST00000374690.3:c.847C>T	p.Pro283Ser	p.P283S	ENST00000374690	NM_000044.3	283	Cct/Tct																																																																														
ATRX	546	MSKCC	GRCh37	X	76912128	76912128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			908	209	539	0	ENST00000373344.5:c.4136C>T	p.Ser1379Leu	p.S1379L	ENST00000373344	NM_000489.3	1379	tCa/tTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938172	76938172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	195	630	1	ENST00000373344.5:c.2576G>A	p.Gly859Glu	p.G859E	ENST00000373344	NM_000489.3	859	gGa/gAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087539	27087540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			930	157	416	0	ENST00000324856.7:c.2116_2117dup	p.Ala707LeufsTer36	p.A707Lfs*36	ENST00000324856	NM_006015.4	705	agt/aGTgt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911609	32911609	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	212	730	0	ENST00000380152.3:c.3117del	p.Thr1040LeufsTer3	p.T1040Lfs*3	ENST00000380152		1039	ccT/cc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5216745	5216746	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			818	171	554	0	ENST00000357368.4:c.4081_4082delinsAA	p.Gly1361Lys	p.G1361K	ENST00000357368	NM_002850.3	1361	GGg/AAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272104	15272105	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			178	31	132	1	ENST00000263388.2:c.6334_6335delinsAA	p.Gly2112Asn	p.G2112N	ENST00000263388	NM_000435.2	2112	GGt/AAt																																																																														
CIC	23152	MSKCC	GRCh37	19	42796544	42796545	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			526	99	296	0	ENST00000575354.2:c.3101_3102delinsGT	p.Pro1034Arg	p.P1034R	ENST00000575354	NM_015125.3	1034	cCC/cGT																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760807	59760808	+	missense_variant	Missense_Mutation	DNP	AT	AT	GA			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			824	469	532	0	ENST00000259008.2:c.3599_3600delinsTC	p.His1200Leu	p.H1200L	ENST00000259008	NM_032043.2	1200	cAT/cTC																																																																														
NF1	4763	MSKCC	GRCh37	17	29586097	29586100	+	frameshift_variant	Frame_Shift_Del	DEL	TATG	TATG	ACT			P-0008557-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			593	267	324	0	ENST00000358273.4:c.4380_4383delinsACT	p.His1460GlnfsTer9	p.H1460Qfs*9	ENST00000358273	NM_001042492.2	1460	caTATG/caACT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	218	312	0				ENST00000310581	NM_198253.2																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	557	585	0	ENST00000267101.3:c.310G>C	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ctg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787845	135787845	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0008575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	275	209	0	ENST00000298552.3:c.738-1G>A		p.X246_splice	ENST00000298552	NM_001162426.1	246																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008672-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	192	497	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008672-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			145	117	327	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0008672-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			63	142	480	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0008672-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			63	142	480	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0008672-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	157	676	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0008672-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			63	142	480	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008705-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	209	551	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008705-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	499	564	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670404	88670404	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008705-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	135	374	0	ENST00000360948.2:c.1282G>C	p.Asp428His	p.D428H	ENST00000360948	NM_001012338.2	428	Gac/Cac																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81960701	81960701	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008705-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	220	568	0	ENST00000359376.3:c.2432A>G	p.Tyr811Cys	p.Y811C	ENST00000359376	NM_002661.3	811	tAt/tGt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69011990	69011990	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008705-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			821	267	728	0	ENST00000288368.4:c.2627T>G	p.Val876Gly	p.V876G	ENST00000288368	NM_024870.2	876	gTg/gGg																																																																														
MCL1	4170	MSKCC	GRCh37	1	150549855	150549855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	64	338	0	ENST00000369026.2:c.1049G>A	p.Arg350Lys	p.R350K	ENST00000369026	NM_021960.4	350	aGa/aAa																																																																														
ALK	238	MSKCC	GRCh37	2	29940459	29940459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	53	457	0	ENST00000389048.3:c.772C>T	p.His258Tyr	p.H258Y	ENST00000389048	NM_004304.4	258	Cat/Tat																																																																														
ALK	238	MSKCC	GRCh37	2	29940515	29940515	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	75	662	0	ENST00000389048.3:c.716A>G	p.Asp239Gly	p.D239G	ENST00000389048	NM_004304.4	239	gAt/gGt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178097161	178097161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	40	356	0	ENST00000397062.3:c.553G>C	p.Glu185Gln	p.E185Q	ENST00000397062	NM_006164.4	185	Gag/Cag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225342959	225342959	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	188	654	0	ENST00000264414.4:c.2133G>C	p.Met711Ile	p.M711I	ENST00000264414	NM_003590.4	711	atG/atC																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403538	138403538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	323	612	0	ENST00000289153.2:c.2244G>C	p.Gln748His	p.Q748H	ENST00000289153	NM_006219.2	748	caG/caC																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968287	2968287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	130	502	0	ENST00000396946.4:c.1699C>T	p.Pro567Ser	p.P567S	ENST00000396946	NM_032415.4	567	Ccc/Tcc																																																																														
MET	4233	MSKCC	GRCh37	7	116339198	116339198	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	235	449	0	ENST00000397752.3:c.60G>C	p.Gln20His	p.Q20H	ENST00000397752	NM_000245.2	20	caG/caC																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528720	8528720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	29	446	0	ENST00000356435.5:c.412G>C	p.Glu138Gln	p.E138Q	ENST00000356435		138	Gag/Cag																																																																														
SYK	6850	MSKCC	GRCh37	9	93636499	93636499	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	165	604	0	ENST00000375746.1:c.929A>T	p.Gln310Leu	p.Q310L	ENST00000375746	NM_001174167.1	310	cAa/cTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332811	70332811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	177	490	0	ENST00000373644.4:c.716C>T	p.Ser239Phe	p.S239F	ENST00000373644	NM_030625.2	239	tCc/tTc																																																																														
TET1	80312	MSKCC	GRCh37	10	70426919	70426919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	117	450	0	ENST00000373644.4:c.4579C>T	p.Leu1527Phe	p.L1527F	ENST00000373644	NM_030625.2	1527	Ctt/Ttt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435987	110435987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	31	218	0	ENST00000375856.3:c.2414C>G	p.Ser805Cys	p.S805C	ENST00000375856	NM_003749.2	805	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	390	622	0	ENST00000269305.4:c.826G>T	p.Ala276Ser	p.A276S	ENST00000269305	NM_001126112.2	276	Gcc/Tcc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370320	40370320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	110	1004	0	ENST00000293328.3:c.1018C>G	p.Gln340Glu	p.Q340E	ENST00000293328	NM_012448.3	340	Cag/Gag																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4094487	4094487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	218	396	0	ENST00000262948.5:c.1056G>T	p.Lys352Asn	p.K352N	ENST00000262948	NM_030662.3	352	aaG/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549427	187549461	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGTGAACCACGGGGCGTGGTCATTCGTGTCGCT	GCGGTGAACCACGGGGCGTGGTCATTCGTGTCGCT	-			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	207	415	0	ENST00000441802.2:c.4657_4691del	p.Ser1553PhefsTer9	p.S1553Ffs*9	ENST00000441802	NM_005245.3	1553	AGCGACACGAATGACCACGCCCCGTGGTTCACCGCt/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7577101	7577101	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	374	611	1	ENST00000269305.4:c.837del	p.Arg280GlufsTer65	p.R280Efs*65	ENST00000269305	NM_001126112.2	279	ggG/gg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295162	1295164	+	5_prime_UTR_variant	5'UTR	ONP	GAA	GAA	TAT			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	31	149	0				ENST00000310581	NM_198253.2																																																																																
IRS2	8660	MSKCC	GRCh37	13	110435525	110435526	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0008715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	25	113	0	ENST00000375856.3:c.2875_2876delinsT	p.Gly959SerfsTer21	p.G959Sfs*21	ENST00000375856	NM_003749.2	959	GGc/Tc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	56	313	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	100	666	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	78	190	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	78	190	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867535	35867535	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	58	394	0	ENST00000303115.3:c.349A>G	p.Thr117Ala	p.T117A	ENST00000303115	NM_002185.3	117	Acc/Gcc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877480	28877480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	70	258	0	ENST00000282397.4:c.3841G>A	p.Glu1281Lys	p.E1281K	ENST00000282397	NM_002019.4	1281	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857500	9857500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	36	346	0	ENST00000330684.3:c.3901G>A	p.Glu1301Lys	p.E1301K	ENST00000330684	NM_001134407.1	1301	Gag/Aag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624936	9624936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	58	577	0	ENST00000353224.5:c.41C>T	p.Pro14Leu	p.P14L	ENST00000353224	NM_177990.2	14	cCg/cTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210675	2210675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	79	549	0	ENST00000398665.3:c.1172C>T	p.Pro391Leu	p.P391L	ENST00000398665	NM_032482.2	391	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433373	49433373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	42	224	0	ENST00000301067.7:c.8074C>T	p.Arg2692Trp	p.R2692W	ENST00000301067	NM_003482.3	2692	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254813	16254813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	86	557	0	ENST00000375759.3:c.2078G>A	p.Arg693Lys	p.R693K	ENST00000375759	NM_015001.2	693	aGg/aAg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932010	36932010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	62	899	1	ENST00000361632.4:c.2459C>T	p.Pro820Leu	p.P820L	ENST00000361632		820	cCc/cTc																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165951	118165951	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	47	272	0	ENST00000369448.3:c.461T>G	p.Leu154Arg	p.L154R	ENST00000369448	NM_017709.3	154	cTg/cGg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193205417	193205417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	133	404	0	ENST00000367435.3:c.1348C>T	p.Pro450Ser	p.P450S	ENST00000367435	NM_024529.4	450	Cct/Tct																																																																														
XPO1	7514	MSKCC	GRCh37	2	61709653	61709653	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	154	382	0	ENST00000401558.2:c.2834T>G	p.Ile945Ser	p.I945S	ENST00000401558	NM_003400.3	945	aTt/aGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47059223	47059223	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	72	297	0	ENST00000409792.3:c.7438C>T	p.Gln2480Ter	p.Q2480*	ENST00000409792	NM_014159.6	2480	Cag/Tag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933972	49933972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	135	603	3	ENST00000296474.3:c.2439+1G>A		p.X813_splice	ENST00000296474	NM_002447.2	813																																																																															
TP63	8626	MSKCC	GRCh37	3	189455560	189455560	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	30	455	0	ENST00000264731.3:c.94A>T	p.Lys32Ter	p.K32*	ENST00000264731	NM_003722.4	32	Aaa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55955873	55955873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	87	480	0	ENST00000263923.4:c.3289G>A	p.Glu1097Lys	p.E1097K	ENST00000263923	NM_002253.2	1097	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55961109	55961109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	81	432	0	ENST00000263923.4:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000263923	NM_002253.2	944	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549794	187549794	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	89	427	0	ENST00000441802.2:c.4447C>T	p.Gln1483Ter	p.Q1483*	ENST00000441802	NM_005245.3	1483	Cag/Tag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950762	38950762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	35	341	0	ENST00000357387.3:c.3188A>G	p.Asp1063Gly	p.D1063G	ENST00000357387	NM_152756.3	1063	gAt/gGt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057684	180057684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	69	662	0	ENST00000261937.6:c.271C>T	p.Pro91Ser	p.P91S	ENST00000261937	NM_182925.4	91	Ccc/Tcc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2972169	2972169	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	217	476	0	ENST00000396946.4:c.1570G>A	p.Ala524Thr	p.A524T	ENST00000396946	NM_032415.4	524	Gcc/Acc																																																																														
MET	4233	MSKCC	GRCh37	7	116397806	116397806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	137	735	0	ENST00000397752.3:c.2080G>A	p.Gly694Arg	p.G694R	ENST00000397752	NM_000245.2	694	Gga/Aga																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275836	38275836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	118	374	0	ENST00000425967.3:c.1433C>T	p.Ser478Leu	p.S478L	ENST00000425967	NM_001174067.1	478	tCa/tTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317936	8317936	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	76	374	0	ENST00000356435.5:c.5677T>A	p.Tyr1893Asn	p.Y1893N	ENST00000356435		1893	Tat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319913	8319913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	116	448	0	ENST00000356435.5:c.5588G>A	p.Arg1863Lys	p.R1863K	ENST00000356435		1863	aGa/aAa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102206810	102206810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	125	954	1	ENST00000263464.3:c.1438G>A	p.Asp480Asn	p.D480N	ENST00000263464	NM_001165.4	480	Gat/Aat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285682	46285682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	66	403	0	ENST00000334344.6:c.5042C>T	p.Ser1681Phe	p.S1681F	ENST00000334344	NM_152641.2	1681	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428045	49428045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	41	236	0	ENST00000301067.7:c.10545C>A	p.Phe3515Leu	p.F3515L	ENST00000301067	NM_003482.3	3515	ttC/ttA																																																																														
FLT3	2322	MSKCC	GRCh37	13	28592630	28592630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	65	670	0	ENST00000241453.7:c.2515G>A	p.Asp839Asn	p.D839N	ENST00000241453	NM_004119.2	839	Gat/Aat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472598	88472598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	92	436	0	ENST00000360948.2:c.1957C>T	p.Leu653Phe	p.L653F	ENST00000360948	NM_001012338.2	653	Ctc/Ttc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81960694	81960694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	137	782	0	ENST00000359376.3:c.2425G>A	p.Gly809Arg	p.G809R	ENST00000359376	NM_002661.3	809	Gga/Aga																																																																														
AURKB	9212	MSKCC	GRCh37	17	8111154	8111154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	51	379	1	ENST00000585124.1:c.53C>T	p.Pro18Leu	p.P18L	ENST00000585124	NM_004217.3	18	cCa/cTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29553597	29553597	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	55	288	0	ENST00000358273.4:c.2146G>T	p.Glu716Ter	p.E716*	ENST00000358273	NM_001042492.2	716	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29585404	29585404	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	49	446	2	ENST00000358273.4:c.4216G>T	p.Gly1406Ter	p.G1406*	ENST00000358273	NM_001042492.2	1406	Gga/Tga																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362461	40362461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	90	891	0	ENST00000293328.3:c.1735G>A	p.Glu579Lys	p.E579K	ENST00000293328	NM_012448.3	579	Gaa/Aaa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39644793	39644793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	64	355	0	ENST00000262039.4:c.2522A>C	p.Lys841Thr	p.K841T	ENST00000262039	NM_002647.2	841	aAg/aCg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223146	5223146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	89	505	0	ENST00000357368.4:c.2657C>T	p.Ser886Phe	p.S886F	ENST00000357368	NM_002850.3	886	tCc/tTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624930	9624930	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	60	623	1	ENST00000353224.5:c.47A>T	p.Asn16Ile	p.N16I	ENST00000353224	NM_177990.2	16	aAc/aTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019446	31019446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	80	321	0	ENST00000375687.4:c.943C>T	p.His315Tyr	p.H315Y	ENST00000375687	NM_015338.5	315	Cat/Tat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039826	47039826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	83	726	0	ENST00000329236.7:c.935C>T	p.Ala312Val	p.A312V	ENST00000329236	NM_001204466.1	312	gCc/gTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165282	47165283	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	32	473	0	ENST00000409792.3:c.843dupA	p.Glu282ArgfsTer9	p.E282Rfs*9	ENST00000409792	NM_014159.6	281	-/A																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690574	88690576	+	missense_variant	Missense_Mutation	ONP	AAG	AAG	GAA			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	96	335	0	ENST00000360948.2:c.454_456delinsTTC	p.Leu152Phe	p.L152F	ENST00000360948	NM_001012338.2	152	CTT/TTC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	78	190	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0008733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	249	518	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0008733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	257	594	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106771	27106771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	246	485	0	ENST00000324856.7:c.6382C>T	p.Gln2128Ter	p.Q2128*	ENST00000324856	NM_006015.4	2128	Cag/Tag																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289244	33289244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	504	455	0	ENST00000374542.5:c.308C>G	p.Ala103Gly	p.A103G	ENST00000374542	NM_001141970.1	103	gCg/gGg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453987	140453987	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0008733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	142	453	0	ENST00000288602.6:c.1741A>G	p.Asn581Asp	p.N581D	ENST00000288602	NM_004333.4	581	Aat/Gat																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852320	63852320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	281	445	0	ENST00000279873.7:c.3098C>T	p.Pro1033Leu	p.P1033L	ENST00000279873	NM_032199.2	1033	cCc/cTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499730	18499730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	154	333	0	ENST00000266497.5:c.1585G>A	p.Val529Met	p.V529M	ENST00000266497		529	Gtg/Atg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948844	17948844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	379	672	0	ENST00000458235.1:c.1598C>T	p.Thr533Ile	p.T533I	ENST00000458235	NM_000215.3	533	aCc/aTc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737824	145737825	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0008733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	179	423	0	ENST00000428558.2:c.3005_3006del	p.Ser1002CysfsTer30	p.S1002Cfs*30	ENST00000428558	NM_004260.3	1002	tCT/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			154	22	485	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			60	20	318	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			60	20	318	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			60	20	318	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579408	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTG	-			P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			77	23	427	0	ENST00000269305.4:c.257_279delCACCAGCCCCCTCCTGGCCCCTG	p.Ala86ValfsTer55	p.A86Vfs*55	ENST00000269305	NM_001126112.2	86	gCACCAGCCCCCTCCTGGCCCCTG/g																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026531	48026531	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			120	35	574	0	ENST00000234420.5:c.1409C>G	p.Ser470Ter	p.S470*	ENST00000234420	NM_000179.2	470	tCa/tGa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048728	180048728	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			54	16	472	1	ENST00000261937.6:c.1834A>T	p.Asn612Tyr	p.N612Y	ENST00000261937	NM_182925.4	612	Aac/Tac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342496	118342496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			125	33	639	0	ENST00000534358.1:c.622G>C	p.Asp208His	p.D208H	ENST00000534358	NM_005933.3	208	Gat/Cat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911684	32911687	+	frameshift_variant	Frame_Shift_Del	DEL	AATT	AATT	-			P-0008780-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			170	31	936	1	ENST00000380152.3:c.3195_3198del	p.Asn1066LeufsTer10	p.N1066Lfs*10	ENST00000380152		1064	tcAATT/tc																																																																														
REL	5966	MSKCC	GRCh37	2	61147615	61147615	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0008784-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			467	47	207	0	ENST00000295025.8:c.1018+2T>C		p.X340_splice	ENST00000295025	NM_002908.2	340																																																																															
NPM1	4869	MSKCC	GRCh37	5	170817081	170817081	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008784-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			324	35	440	0	ENST00000296930.5:c.85T>G	p.Tyr29Asp	p.Y29D	ENST00000296930	NM_002520.6	29	Tat/Gat																																																																														
RHEB	6009	MSKCC	GRCh37	7	151181846	151181846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008784-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			217	12	645	0	ENST00000262187.5:c.169C>T	p.Gln57Ter	p.Q57*	ENST00000262187	NM_005614.3	57	Caa/Taa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008784-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			99	13	264	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778455	3778455	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008784-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			384	22	438	0	ENST00000262367.5:c.6593T>A	p.Leu2198Gln	p.L2198Q	ENST00000262367	NM_004380.2	2198	cTg/cAg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750375	39750375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008784-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			153	11	371	0	ENST00000361337.2:c.1990G>A	p.Asp664Asn	p.D664N	ENST00000361337	NM_003286.2	664	Gac/Aac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	G			P-0008784-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			831	109	515	1	ENST00000329236.7:c.201+1688T>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																
RBM10	8241	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	A			P-0008784-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			890	50	516	0	ENST00000329236.7:c.201+1688T>A		p.*67*	ENST00000329236	NM_001204466.1																																																																																
BAP1	8314	MSKCC	GRCh37	3	52441322	52441339	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGGCTCGGGCCTGGGGA	GTGGCTCGGGCCTGGGGA	C			P-0008784-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			308	51	506	0	ENST00000460680.1:c.438-7_448delinsG		p.X146_splice	ENST00000460680	NM_004656.3	146																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	55	192	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	182	173	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	171	159	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716156	243716156	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	141	410	0	ENST00000263826.5:c.1038C>G	p.Phe346Leu	p.F346L	ENST00000263826	NM_005465.4	346	ttC/ttG																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440359	52440359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	132	208	1	ENST00000460680.1:c.693G>T	p.Met231Ile	p.M231I	ENST00000460680	NM_004656.3	231	atG/atT																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441262	52441262	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	302	320	0	ENST00000460680.1:c.508T>C	p.Phe170Leu	p.F170L	ENST00000460680	NM_004656.3	170	Ttt/Ctt																																																																														
FYN	2534	MSKCC	GRCh37	6	112017552	112017552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	101	492	1	ENST00000368678.4:c.961G>A	p.Asp321Asn	p.D321N	ENST00000368678		321	Gac/Aac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151866283	151866283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	31	290	0	ENST00000262189.6:c.9505C>T	p.Pro3169Ser	p.P3169S	ENST00000262189	NM_170606.2	3169	Cca/Tca																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80336422	80336422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	44	198	0	ENST00000286548.4:c.897G>C	p.Gln299His	p.Q299H	ENST00000286548	NM_002072.3	299	caG/caC																																																																														
ATM	472	MSKCC	GRCh37	11	108139268	108139268	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55723361		P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	144	332	1	ENST00000278616.4:c.2770C>T	p.Arg924Trp	p.R924W	ENST00000278616	NM_000051.3	924	Cgg/Tgg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3823915	3823915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	223	279	0	ENST00000262367.5:c.2300C>A	p.Ser767Tyr	p.S767Y	ENST00000262367	NM_004380.2	767	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578270	7578270	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	262	301	0	ENST00000269305.4:c.579T>A	p.His193Gln	p.H193Q	ENST00000269305	NM_001126112.2	193	caT/caA																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245465	41245465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	47	492	1	ENST00000357654.3:c.2083G>A	p.Asp695Asn	p.D695N	ENST00000357654	NM_007294.3	695	Gat/Aat																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	113	329	1	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41574216	41574216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	234	351	0	ENST00000263253.7:c.6501G>C	p.Gln2167His	p.Q2167H	ENST00000263253	NM_001429.3	2167	caG/caC																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412773	63412773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	261	204	0	ENST00000330258.3:c.394A>G	p.Ser132Gly	p.S132G	ENST00000330258	NM_152424.3	132	Agt/Ggt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929322	44929325	+	frameshift_variant	Frame_Shift_Del	DEL	CATA	CATA	-			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	247	233	0	ENST00000377967.4:c.2424_2427del	p.His808GlnfsTer58	p.H808Qfs*58	ENST00000377967	NM_021140.2	808	CATAca/ca																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045540	47045540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	238	165	0	ENST00000329236.7:c.2274del	p.Lys759SerfsTer10	p.K759Sfs*10	ENST00000329236	NM_001204466.1	758	aGg/ag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652043	36652044	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGACACCACTGGAGG			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	96	246	0	ENST00000244741.5:c.167_182dup	p.Phe63ThrfsTer5	p.F63Tfs*5	ENST00000244741	NM_000389.4	55	-/GAGACACCACTGGAGG																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588173	69588173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	641	441	0	ENST00000168712.1:c.525delC	p.Gly176AlafsTer6	p.G176Afs*6	ENST00000168712	NM_002007.2	175	ccC/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	129	209	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38942984	38942984	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77464125		P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	319	450	0	ENST00000357387.3:c.5003C>T	p.Pro1668Leu	p.P1668L	ENST00000357387	NM_152756.3	1668	cCg/cTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245843	46245843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	245	482	0	ENST00000334344.6:c.3937C>T	p.Gln1313Ter	p.Q1313*	ENST00000334344	NM_152641.2	1313	Caa/Taa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	206	481	1	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662582	117662582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	138	487	0	ENST00000368508.3:c.4883G>A	p.Gly1628Glu	p.G1628E	ENST00000368508	NM_002944.2	1628	gGa/gAa																																																																														
MYC	4609	MSKCC	GRCh37	8	128753194	128753194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	394	261	0	ENST00000377970.2:c.1355C>T	p.Ser452Phe	p.S452F	ENST00000377970	NM_002467.4	452	tCt/tTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601310	28601310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	349	525	0	ENST00000241453.7:c.2122G>A	p.Glu708Lys	p.E708K	ENST00000241453	NM_004119.2	708	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295786	212295786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	186	568	0	ENST00000342788.4:c.2527G>A	p.Asp843Asn	p.D843N	ENST00000342788	NM_005235.2	843	Gat/Aat																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123298225	123298225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	211	304	1	ENST00000358487.5:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000358487	NM_000141.4	210	cGa/cAa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975495	13975495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	167	254	0	ENST00000405192.2:c.392G>A	p.Gly131Glu	p.G131E	ENST00000405192	NM_001163147.1	131	gGa/gAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008201	29008201	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	379	399	1	ENST00000282397.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000282397	NM_002019.4	224	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543829	212543829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	304	399	1	ENST00000342788.4:c.1570C>T	p.Arg524Cys	p.R524C	ENST00000342788	NM_005235.2	524	Cgc/Tgc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027385	48027385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	159	452	0	ENST00000234420.5:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000234420	NM_000179.2	755	Gaa/Aaa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61753575	61753575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	370	493	0	ENST00000401558.2:c.208T>C	p.Ser70Pro	p.S70P	ENST00000401558	NM_003400.3	70	Tct/Cct																																																																														
RAF1	5894	MSKCC	GRCh37	3	12627263	12627263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	361	527	0	ENST00000251849.4:c.1453G>A	p.Gly485Arg	p.G485R	ENST00000251849	NM_002880.3	485	Gga/Aga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277237	41277237	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	180	428	0	ENST00000349496.5:c.1706T>C	p.Ile569Thr	p.I569T	ENST00000349496	NM_001904.3	569	aTa/aCa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940148	49940148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	417	569	4	ENST00000296474.3:c.895G>A	p.Asp299Asn	p.D299N	ENST00000296474	NM_002447.2	299	Gac/Aac																																																																														
RYBP	23429	MSKCC	GRCh37	3	72428194	72428194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	250	520	0	ENST00000477973.2:c.696C>T	p.Ser233Leu	p.S233L	ENST00000477973	NM_012234.5	233	tCa/tTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55140786	55140786	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	303	431	0	ENST00000257290.5:c.1647G>A	p.Trp549Ter	p.W549*	ENST00000257290	NM_006206.4	549	tgG/tgA																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874636	35874636	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	239	540	0	ENST00000303115.3:c.792G>A	p.Trp264Ter	p.W264*	ENST00000303115	NM_002185.3	264	tgG/tgA																																																																														
RASA1	5921	MSKCC	GRCh37	5	86633834	86633834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	605	547	0	ENST00000274376.6:c.943G>A	p.Asp315Asn	p.D315N	ENST00000274376	NM_002890.2	315	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674329	117674329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	220	366	0	ENST00000368508.3:c.4145G>A	p.Gly1382Glu	p.G1382E	ENST00000368508	NM_002944.2	1382	gGa/gAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985534	2985534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	310	507	0	ENST00000396946.4:c.277G>A	p.Glu93Lys	p.E93K	ENST00000396946	NM_032415.4	93	Gag/Aag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741225	145741225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	694	492	0	ENST00000428558.2:c.1181G>A	p.Gly394Asp	p.G394D	ENST00000428558	NM_004260.3	394	gGt/gAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449832	8449832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	126	303	0	ENST00000356435.5:c.3881G>A	p.Arg1294Lys	p.R1294K	ENST00000356435		1294	aGg/aAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518342	8518342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	176	269	0	ENST00000356435.5:c.1049C>T	p.Pro350Leu	p.P350L	ENST00000356435		350	cCt/cTt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123298199	123298199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	276	410	0	ENST00000358487.5:c.655G>A	p.Glu219Lys	p.E219K	ENST00000358487	NM_000141.4	219	Gaa/Aaa																																																																														
PGR	5241	MSKCC	GRCh37	11	100999512	100999512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	408	740	0	ENST00000325455.5:c.290G>A	p.Gly97Glu	p.G97E	ENST00000325455	NM_001202474.3	97	gGa/gAa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434077	121434077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	351	492	0	ENST00000257555.6:c.968G>A	p.Gly323Glu	p.G323E	ENST00000257555		323	gGa/gAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133240616	133240616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	396	476	1	ENST00000320574.5:c.2680G>A	p.Gly894Ser	p.G894S	ENST00000320574	NM_006231.2	894	Ggc/Agc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472522	88472522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55890138		P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	381	472	0	ENST00000360948.2:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000360948	NM_001012338.2	678	cGa/cAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476382	88476382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	215	306	0	ENST00000360948.2:c.1750G>A	p.Asp584Asn	p.D584N	ENST00000360948	NM_001012338.2	584	Gat/Aat																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99454591	99454591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	366	458	1	ENST00000268035.6:c.1510C>T	p.Arg504Cys	p.R504C	ENST00000268035	NM_000875.3	504	Cgc/Tgc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222317	2222317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	520	415	1	ENST00000326181.6:c.601C>T	p.Pro201Ser	p.P201S	ENST00000326181	NM_032271.2	201	Ccc/Tcc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81914540	81914540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	514	742	0	ENST00000359376.3:c.674C>T	p.Ser225Leu	p.S225L	ENST00000359376	NM_002661.3	225	tCg/tTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29528054	29528054	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	122	88	0	ENST00000358273.4:c.1063-1G>A		p.X355_splice	ENST00000358273	NM_001042492.2	355																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868193	37868193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	585	421	0	ENST00000269571.5:c.914C>T	p.Ser305Phe	p.S305F	ENST00000269571		305	tCt/tTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581232	48581232	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	274	520	0	ENST00000342988.3:c.536T>G	p.Ile179Ser	p.I179S	ENST00000342988	NM_005359.5	179	aTt/aGt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355272	15355272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	56	94	0	ENST00000263377.2:c.2351C>T	p.Ser784Phe	p.S784F	ENST00000263377	NM_058243.2	784	tCc/tTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794445	42794445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	449	649	1	ENST00000575354.2:c.1525C>T	p.Pro509Ser	p.P509S	ENST00000575354	NM_015125.3	509	Cca/Tca																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024077	31024077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	310	407	0	ENST00000375687.4:c.3562C>T	p.Leu1188Phe	p.L1188F	ENST00000375687	NM_015338.5	1188	Ctt/Ttt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790090	40790090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	211	298	0	ENST00000373198.4:c.2641C>T	p.Arg881Trp	p.R881W	ENST00000373198	NM_133170.3	881	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514518	41514518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	311	447	0	ENST00000373198.4:c.143G>A	p.Gly48Glu	p.G48E	ENST00000373198	NM_133170.3	48	gGg/gAg																																																																														
AR	367	MSKCC	GRCh37	X	66863224	66863224	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	250	477	0	ENST00000374690.3:c.1743G>C	p.Lys581Asn	p.K581N	ENST00000374690	NM_000044.3	581	aaG/aaC																																																																														
AR	367	MSKCC	GRCh37	X	66942680	66942680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	487	692	2	ENST00000374690.3:c.2461G>A	p.Gly821Arg	p.G821R	ENST00000374690	NM_000044.3	821	Ggg/Agg																																																																														
MED12	9968	MSKCC	GRCh37	X	70349933	70349933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	386	601	1	ENST00000374080.3:c.3916G>A	p.Asp1306Asn	p.D1306N	ENST00000374080		1306	Gac/Aac																																																																														
ATRX	546	MSKCC	GRCh37	X	76953090	76953090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	232	704	0	ENST00000373344.5:c.223G>A	p.Gly75Arg	p.G75R	ENST00000373344	NM_000489.3	75	Gga/Aga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224587	123224587	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	268	607	0	ENST00000218089.9:c.3440A>T	p.Glu1147Val	p.E1147V	ENST00000218089	NM_001042749.1	1147	gAa/gTa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225342972	225342972	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	305	641	0	ENST00000264414.4:c.2120del	p.Ile707LysfsTer4	p.I707Kfs*4	ENST00000264414	NM_003590.4	707	aTa/aa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2972201	2972202	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	244	378	0	ENST00000396946.4:c.1537_1538delinsTT	p.Pro513Phe	p.P513F	ENST00000396946	NM_032415.4	513	CCc/TTc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511039	148511103	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTGTTGCTCACCTTTTTGGAGCCCCGCTGAATACTGCAGTTCTTGCAGGACACATTTTTACTGT	CTTGTTGCTCACCTTTTTGGAGCCCCGCTGAATACTGCAGTTCTTGCAGGACACATTTTTACTGT	G			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	162	242	0	ENST00000320356.2:c.1799_1851+12delinsC		p.X600_splice	ENST00000320356	NM_004456.4	600																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52705250	52705251	+	stop_gained	Nonsense_Mutation	DNP	TG	TG	GT			P-0008857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	345	534	1	ENST00000322088.6:c.132_133delinsGT	p.Glu45Ter	p.E45*	ENST00000322088	NM_014225.5	44	gtTGaa/gtGTaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	165	329	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	50	264	0				ENST00000310581	NM_198253.2																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89259265	89259265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	71	355	0	ENST00000336596.2:c.409G>C	p.Glu137Gln	p.E137Q	ENST00000336596	NM_005233.5	137	Gag/Cag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541502	187541502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	163	549	1	ENST00000441802.2:c.6238G>T	p.Val2080Leu	p.V2080L	ENST00000441802	NM_005245.3	2080	Gtg/Ttg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180055895	180055895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	403	464	0	ENST00000261937.6:c.1090C>T	p.Pro364Ser	p.P364S	ENST00000261937	NM_182925.4	364	Ccc/Tcc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522329	157522329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	137	416	1	ENST00000346085.5:c.4601G>A	p.Arg1534His	p.R1534H	ENST00000346085	NM_020732.3	1534	cGc/cAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404954	404954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	82	361	0	ENST00000399788.2:c.4240A>G	p.Ser1414Gly	p.S1414G	ENST00000399788	NM_001042603.1	1414	Agc/Ggc																																																																														
AR	367	MSKCC	GRCh37	X	66765710	66765710	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	325	543	0	ENST00000374690.3:c.722A>G	p.Lys241Arg	p.K241R	ENST00000374690	NM_000044.3	241	aAg/aGg																																																																														
ATRX	546	MSKCC	GRCh37	X	76763896	76763896	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	191	511	0	ENST00000373344.5:c.7412C>G	p.Pro2471Arg	p.P2471R	ENST00000373344	NM_000489.3	2471	cCa/cGa																																																																														
BTK	695	MSKCC	GRCh37	X	100625036	100625036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	218	538	0	ENST00000308731.7:c.341T>C	p.Phe114Ser	p.F114S	ENST00000308731	NM_000061.2	114	tTc/tCc																																																																														
BCL6	604	MSKCC	GRCh37	3	187447317	187447317	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	230	254	0	ENST00000232014.4:c.876delC	p.Tyr293ThrfsTer31	p.Y293Tfs*31	ENST00000232014	NM_001130845.1	292	ccC/cc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098964	178098966	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	160	296	0	ENST00000397062.3:c.79_81del	p.Asp27del	p.D27del	ENST00000397062	NM_006164.4	27	GAT/-																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786055	135786055	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	99	389	0	ENST00000298552.3:c.1166del	p.Gly389GlufsTer51	p.G389Efs*51	ENST00000298552	NM_001162426.1	389	gGa/ga																																																																														
STK11	6794	MSKCC	GRCh37	19	1220659	1220660	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0008871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	447	445	0	ENST00000326873.7:c.677_678del	p.Asn226ArgfsTer39	p.N226Rfs*39	ENST00000326873	NM_000455.4	226	aAC/a																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			13	397	275	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	470	411	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			9	300	196	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			9	300	196	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			9	300	196	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968287	2968287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	613	422	1	ENST00000396946.4:c.1699C>T	p.Pro567Ser	p.P567S	ENST00000396946	NM_032415.4	567	Ccc/Tcc																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699367	117699367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	652	430	0	ENST00000369458.3:c.274G>A	p.Glu92Lys	p.E92K	ENST00000369458	NM_024626.3	92	Gag/Aag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668691	52668691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	397	493	0	ENST00000394830.3:c.1228C>T	p.His410Tyr	p.H410Y	ENST00000394830	NM_018313.4	410	Cat/Tat																																																																														
TP63	8626	MSKCC	GRCh37	3	189586431	189586431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			11	364	220	0	ENST00000264731.3:c.1055G>A	p.Arg352Lys	p.R352K	ENST00000264731	NM_003722.4	352	aGg/aAg																																																																														
KDR	3791	MSKCC	GRCh37	4	55968633	55968633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200338299		P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	424	380	0	ENST00000263923.4:c.2030C>T	p.Thr677Met	p.T677M	ENST00000263923	NM_002253.2	677	aCg/aTg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188974	32188974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	995	528	0	ENST00000375023.3:c.580G>A	p.Asp194Asn	p.D194N	ENST00000375023	NM_004557.3	194	Gat/Aat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390999	139390999	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	546	358	2	ENST00000277541.6:c.7192C>T	p.Gln2398Ter	p.Q2398*	ENST00000277541	NM_017617.3	2398	Cag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373404	118373404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			6	437	323	0	ENST00000534358.1:c.6797C>T	p.Ser2266Phe	p.S2266F	ENST00000534358	NM_005933.3	2266	tCt/tTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28626698	28626698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	482	346	1	ENST00000241453.7:c.598G>A	p.Asp200Asn	p.D200N	ENST00000241453	NM_004119.2	200	Gat/Aat																																																																														
AR	367	MSKCC	GRCh37	X	66931393	66931393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	740	621	0	ENST00000374690.3:c.2035G>A	p.Glu679Lys	p.E679K	ENST00000374690	NM_000044.3	679	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692815	89692815	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			7	251	162	0	ENST00000371953.3:c.300del	p.Ile101SerfsTer12	p.I101Sfs*12	ENST00000371953	NM_000314.4	100	cTt/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7579357	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	ACG	ACG	CA			P-0008912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	510	376	0	ENST00000269305.4:c.328_330delinsTG	p.Arg110CysfsTer13	p.R110Cfs*13	ENST00000269305	NM_001126112.2	110	CGT/TG																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210741	2210741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1186	227	657	5	ENST00000398665.3:c.1238G>A	p.Arg413His	p.R413H	ENST00000398665	NM_032482.2	413	cGc/cAc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661658	227661658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	73	389	2	ENST00000305123.5:c.1797C>A	p.His599Gln	p.H599Q	ENST00000305123	NM_005544.2	599	caC/caA																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911075	29911075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1445	106	657	1	ENST00000376809.5:c.374G>A	p.Cys125Tyr	p.C125Y	ENST00000376809	NM_002116.7	125	tGc/tAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37671998	37671999	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATACACAAAGAT			P-0008928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	113	688	0	ENST00000447079.4:c.2784_2785insTACACAAAGATA	p.Glu928_Leu929insTyrThrLysIle	p.E928_L929insYTKI	ENST00000447079	NM_015083.1	928	gaa/gaATACACAAAGATa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	80	187	0				ENST00000310581	NM_198253.2																																																																																
ROS1	6098	MSKCC	GRCh37	6	117641144	117641144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	415	750	1	ENST00000368508.3:c.5827G>A	p.Glu1943Lys	p.E1943K	ENST00000368508	NM_002944.2	1943	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55956205	55956205	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148668147		P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	150	518	4	ENST00000263923.4:c.3110C>T	p.Ser1037Leu	p.S1037L	ENST00000263923	NM_002253.2	1037	tCg/tTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663590	117663590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	248	588	1	ENST00000368508.3:c.4642G>A	p.Glu1548Lys	p.E1548K	ENST00000368508	NM_002944.2	1548	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	429	567	1	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	438	403	0	ENST00000369535.4:c.37G>A	p.Gly13Ser	p.G13S	ENST00000369535	NM_002524.4	13	Ggt/Agt																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873223	136873223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	658	784	0	ENST00000241393.3:c.275C>T	p.Pro92Leu	p.P92L	ENST00000241393	NM_003467.2	92	cCc/cTc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158626993	158626993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	204	730	0	ENST00000263640.3:c.677G>A	p.Ser226Asn	p.S226N	ENST00000263640	NM_001105.4	226	aGc/aAc																																																																														
TP63	8626	MSKCC	GRCh37	3	189582195	189582195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	385	340	0	ENST00000264731.3:c.754G>A	p.Glu252Lys	p.E252K	ENST00000264731	NM_003722.4	252	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518291	187518291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	96	94	0	ENST00000441802.2:c.12403C>T	p.Pro4135Ser	p.P4135S	ENST00000441802	NM_005245.3	4135	Cct/Tct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120545	94120545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	431	881	0	ENST00000369303.4:c.506C>G	p.Thr169Ser	p.T169S	ENST00000369303	NM_004440.3	169	aCt/aGt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522454	157522454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	350	517	0	ENST00000346085.5:c.4726C>T	p.Pro1576Ser	p.P1576S	ENST00000346085	NM_020732.3	1576	Ccg/Tcg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509849	106509849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	437	580	0	ENST00000359195.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000359195	NM_002649.2	615	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116409720	116409720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	164	322	0	ENST00000397752.3:c.2605G>A	p.Ala869Thr	p.A869T	ENST00000397752	NM_000245.2	869	Gca/Aca																																																																														
MET	4233	MSKCC	GRCh37	7	116411950	116411950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	198	425	0	ENST00000397752.3:c.2935C>T	p.His979Tyr	p.H979Y	ENST00000397752	NM_000245.2	979	Cat/Tat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878329	151878329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	416	501	1	ENST00000262189.6:c.6616C>T	p.Pro2206Ser	p.P2206S	ENST00000262189	NM_170606.2	2206	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8375969	8375969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	239	465	0	ENST00000356435.5:c.4628C>T	p.Pro1543Leu	p.P1543L	ENST00000356435		1543	cCt/cTt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402567	139402567	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	235	344	0	ENST00000277541.6:c.3350A>C	p.Gln1117Pro	p.Q1117P	ENST00000277541	NM_017617.3	1117	cAg/cCg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572643	64572643	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	234	330	0	ENST00000337652.1:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000337652	NM_130803.2	410	Cag/Tag																																																																														
CBL	867	MSKCC	GRCh37	11	119148890	119148890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	352	291	0	ENST00000264033.4:c.1110A>C	p.Leu370Phe	p.L370F	ENST00000264033	NM_005188.3	370	ttA/ttC																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865602	57865602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	295	765	2	ENST00000228682.2:c.3079C>T	p.Pro1027Ser	p.P1027S	ENST00000228682	NM_005269.2	1027	Cct/Tct																																																																														
POLE	5426	MSKCC	GRCh37	12	133225576	133225576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	193	434	0	ENST00000320574.5:c.4088C>T	p.Pro1363Leu	p.P1363L	ENST00000320574	NM_006231.2	1363	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031816	10031816	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	157	244	0	ENST00000330684.3:c.1007C>T	p.Pro336Leu	p.P336L	ENST00000330684	NM_001134407.1	336	cCa/cTa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618635	37618635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	376	391	1	ENST00000447079.4:c.311G>T	p.Arg104Leu	p.R104L	ENST00000447079	NM_015083.1	104	cGg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435498	56435498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	175	481	0	ENST00000407977.2:c.1639C>T	p.His547Tyr	p.H547Y	ENST00000407977		547	Cat/Tat																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581238	48581238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	163	510	0	ENST00000342988.3:c.542C>T	p.Thr181Ile	p.T181I	ENST00000342988	NM_005359.5	181	aCc/aTc																																																																														
AXL	558	MSKCC	GRCh37	19	41759589	41759589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	463	568	1	ENST00000301178.4:c.2012G>A	p.Arg671Gln	p.R671Q	ENST00000301178	NM_021913.4	671	cGg/cAg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374369	31374369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	429	545	0	ENST00000328111.2:c.368C>T	p.Ser123Phe	p.S123F	ENST00000328111	NM_006892.3	123	tCc/tTc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46267787	46267787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	664	863	0	ENST00000371998.3:c.2548C>T	p.Pro850Ser	p.P850S	ENST00000371998		850	Cct/Tct																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961460	54961460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	132	259	0	ENST00000312783.6:c.172C>T	p.Pro58Ser	p.P58S	ENST00000312783	NM_198436.1	58	Cct/Tct																																																																														
EP300	2033	MSKCC	GRCh37	22	41543879	41543879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	608	563	2	ENST00000263253.7:c.2170C>T	p.Pro724Ser	p.P724S	ENST00000263253	NM_001429.3	724	Cct/Tct																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649608	48649608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	564	336	0	ENST00000376670.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000376670	NM_002049.3	31	gGg/gAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412094	63412094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	773	485	0	ENST00000330258.3:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000330258	NM_152424.3	358	cGa/cAa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742111	145742112	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	69	196	0	ENST00000428558.2:c.391_392delinsAA	p.Gly131Lys	p.G131K	ENST00000428558	NM_004260.3	131	GGa/AAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918761	32918762	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	236	569	1	ENST00000380152.3:c.6908_6909delCCinsTT	p.Ser2303Phe	p.S2303F	ENST00000380152		2303	tCC/tTT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295253	+	upstream_gene_variant	5'Flank	ONP	GAGG	GAGG	AAGA			P-0008942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	135	309	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0008963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	12	388	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578318	212578318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	206	420	1	ENST00000342788.4:c.939G>A	p.Met313Ile	p.M313I	ENST00000342788	NM_005235.2	313	atG/atA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	86	186	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	154	270	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148514980	148514980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	242	544	0	ENST00000320356.2:c.1229C>T	p.Ser410Leu	p.S410L	ENST00000320356	NM_004456.4	410	tCg/tTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0008963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	145	420	1	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0008963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	145	420	1	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98218623	98218623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	105	282	0	ENST00000331920.6:c.3241G>A	p.Val1081Met	p.V1081M	ENST00000331920	NM_000264.3	1081	Gtg/Atg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729175	66729175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	25	316	0	ENST00000307102.5:c.383G>A	p.Gly128Asp	p.G128D	ENST00000307102	NM_002755.3	128	gGc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944419	40944419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	210	569	0	ENST00000373198.4:c.2083C>T	p.Leu695Phe	p.L695F	ENST00000373198	NM_133170.3	695	Ctc/Ttc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0008968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	265	357	3				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0008968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	394	275	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942017	44942017	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			46	317	313	0	ENST00000377967.4:c.3268del	p.Leu1090TyrfsTer14	p.L1090Yfs*14	ENST00000377967	NM_021140.2	1089	gaC/ga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0008972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	119	308	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0008972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	67	219	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	21	333	0	ENST00000269305.4:c.700T>A	p.Tyr234Asn	p.Y234N	ENST00000269305	NM_001126112.2	234	Tac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	32	336	0	ENST00000269305.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000269305	NM_001126112.2	236	Tac/Cac																																																																														
PARP1	142	MSKCC	GRCh37	1	226552812	226552812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	48	401	0	ENST00000366794.5:c.2549C>T	p.Pro850Leu	p.P850L	ENST00000366794	NM_001618.3	850	cCc/cTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399396	139399396	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	59	264	0	ENST00000277541.6:c.4747G>T	p.Glu1583Ter	p.E1583*	ENST00000277541	NM_017617.3	1583	Gag/Tag																																																																														
BLM	641	MSKCC	GRCh37	15	91304487	91304487	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0008972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	28	220	0	ENST00000355112.3:c.1882+2T>G		p.X628_splice	ENST00000355112	NM_000057.2	628																																																																															
MED12	9968	MSKCC	GRCh37	X	70349993	70349993	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	40	219	0	ENST00000374080.3:c.3976T>C	p.Tyr1326His	p.Y1326H	ENST00000374080		1326	Tat/Cat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	259	315	0				ENST00000310581	NM_198253.2																																																																																
EZH2	2146	MSKCC	GRCh37	7	148508728	148508728	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	310	454	0	ENST00000320356.2:c.1936T>A	p.Tyr646Asn	p.Y646N	ENST00000320356	NM_004456.4	646	Tac/Aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	147	333	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
NF1	4763	MSKCC	GRCh37	17	29528489	29528489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	497	565	0	ENST00000358273.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000358273	NM_001042492.2	416	Cga/Tga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	219	512	3	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																														
AR	367	MSKCC	GRCh37	X	66766427	66766427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	100	89	0	ENST00000374690.3:c.1439C>T	p.Pro480Leu	p.P480L	ENST00000374690	NM_000044.3	480	cCc/cTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81374403	81374403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	174	452	0	ENST00000222390.5:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000222390	NM_000601.4	220	cGa/cAa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36931984	36931984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	428	687	0	ENST00000361632.4:c.2485G>A	p.Gly829Arg	p.G829R	ENST00000361632		829	Ggg/Agg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721087	61721087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	168	382	0	ENST00000401558.2:c.1187G>A	p.Gly396Glu	p.G396E	ENST00000401558	NM_003400.3	396	gGa/gAa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247418	71247418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	282	383	0	ENST00000318789.4:c.115G>A	p.Gly39Arg	p.G39R	ENST00000318789	NM_032682.5	39	Gga/Aga																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427729	72427729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	225	329	0	ENST00000477973.2:c.759A>G	p.Asn254Ser	p.N254S	ENST00000477973	NM_012234.5	254	aAc/aGc																																																																														
TP63	8626	MSKCC	GRCh37	3	189584536	189584536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	161	496	0	ENST00000264731.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000264731	NM_003722.4	278	Gat/Aat																																																																														
TET2	54790	MSKCC	GRCh37	4	106156790	106156790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	234	413	1	ENST00000380013.4:c.1691G>T	p.Trp564Leu	p.W564L	ENST00000380013	NM_001127208.2	564	tGg/tTg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143191904	143191904	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	284	471	0	ENST00000262992.4:c.527T>C	p.Val176Ala	p.V176A	ENST00000262992	NM_001101669.1	176	gTt/gCt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295204	1295204	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs2735943		P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	86	249	0				ENST00000310581	NM_198253.2																																																																																
NSD1	64324	MSKCC	GRCh37	5	176721147	176721147	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	249	184	0	ENST00000439151.2:c.6778C>T	p.Gln2260Ter	p.Q2260*	ENST00000439151	NM_022455.4	2260	Cag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178597	32178597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	235	404	0	ENST00000375023.3:c.2797C>T	p.Pro933Ser	p.P933S	ENST00000375023	NM_004557.3	933	Cca/Tca																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287449	33287449	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	176	303	0	ENST00000374542.5:c.1648G>T	p.Glu550Ter	p.E550*	ENST00000374542	NM_001141970.1	550	Gaa/Taa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157511234	157511234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	244	397	1	ENST00000346085.5:c.3752G>A	p.Arg1251Gln	p.R1251Q	ENST00000346085	NM_020732.3	1251	cGg/cAg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814845	139814845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	411	684	2	ENST00000247668.2:c.838G>A	p.Ala280Thr	p.A280T	ENST00000247668	NM_021138.3	280	Gcc/Acc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505344	125505344	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	304	494	0	ENST00000428830.2:c.634A>T	p.Ser212Cys	p.S212C	ENST00000428830	NM_001114121.2	212	Agt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133233836	133233836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	275	502	0	ENST00000320574.5:c.3468C>G	p.Asn1156Lys	p.N1156K	ENST00000320574	NM_006231.2	1156	aaC/aaG																																																																														
MGA	23269	MSKCC	GRCh37	15	41961522	41961522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	424	821	1	ENST00000219905.7:c.430C>T	p.Pro144Ser	p.P144S	ENST00000219905	NM_001164273.1	144	Cct/Tct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	249	446	1	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831953	72831953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	385	830	0	ENST00000268489.5:c.4628G>C	p.Arg1543Pro	p.R1543P	ENST00000268489	NM_006885.3	1543	cGc/cCc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215370	41215370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	266	530	0	ENST00000357654.3:c.5173G>A	p.Glu1725Lys	p.E1725K	ENST00000357654	NM_007294.3	1725	Gaa/Aaa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47677874	47677874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	172	317	0	ENST00000347630.2:c.991G>A	p.Asp331Asn	p.D331N	ENST00000347630	NM_001007230.1	331	Gat/Aat																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953411	17953411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	129	325	0	ENST00000458235.1:c.575C>T	p.Ala192Val	p.A192V	ENST00000458235	NM_000215.3	192	gCc/gTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560970	9560970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	239	416	0	ENST00000353224.5:c.812C>T	p.Ser271Leu	p.S271L	ENST00000353224	NM_177990.2	271	tCg/tTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023295	31023295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	246	456	0	ENST00000375687.4:c.2780G>A	p.Gly927Glu	p.G927E	ENST00000375687	NM_015338.5	927	gGa/gAa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024491	31024491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	223	387	0	ENST00000375687.4:c.3976C>T	p.Pro1326Ser	p.P1326S	ENST00000375687	NM_015338.5	1326	Cct/Tct																																																																														
TOP1	7150	MSKCC	GRCh37	20	39706268	39706268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	255	412	0	ENST00000361337.2:c.326G>T	p.Gly109Val	p.G109V	ENST00000361337	NM_003286.2	109	gGc/gTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755557	39755557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	252	418	0	ENST00000288319.7:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000288319	NM_182918.3	403	cCc/cTc																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504147	123504147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	208	243	0	ENST00000371139.4:c.323C>T	p.Ala108Val	p.A108V	ENST00000371139	NM_001114937.2	108	gCt/gTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29528461	29528462	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	265	555	1	ENST00000358273.4:c.1218_1219del	p.Phe406LeufsTer22	p.F406Lfs*22	ENST00000358273	NM_001042492.2	406	ttTCac/ttac																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247516	71247517	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	221	350	0	ENST00000318789.4:c.16_17delinsAA	p.Gly6Lys	p.G6K	ENST00000318789	NM_032682.5	6	GGg/AAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47147519	47147519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	205	412	0	ENST00000409792.3:c.4807C>T	p.His1603Tyr	p.H1603Y	ENST00000409792	NM_014159.6	1603	Cat/Tat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	179	286	2				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0008975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	314	477	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20148727	20148727	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0008975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	277	233	0	ENST00000379607.5:c.338-2A>T		p.X113_splice	ENST00000379607	NM_001412.3	113																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101358	27101358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	605	438	1	ENST00000324856.7:c.4640C>T	p.Ser1547Phe	p.S1547F	ENST00000324856	NM_006015.4	1547	tCc/tTc																																																																														
MPL	4352	MSKCC	GRCh37	1	43812246	43812246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	635	447	0	ENST00000372470.3:c.1111G>A	p.Ala371Thr	p.A371T	ENST00000372470	NM_005373.2	371	Gcc/Acc																																																																														
MPL	4352	MSKCC	GRCh37	1	43817888	43817888	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	267	405	0	ENST00000372470.3:c.1567A>G	p.Arg523Gly	p.R523G	ENST00000372470	NM_005373.2	523	Aga/Gga																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25459872	25459872	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	335	399	1	ENST00000264709.3:c.2411C>T	p.Pro804Leu	p.P804L	ENST00000264709	NM_175629.2	804	cCg/cTg																																																																														
ALK	238	MSKCC	GRCh37	2	29446322	29446322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1615	378	652	0	ENST00000389048.3:c.3245A>G	p.Lys1082Arg	p.K1082R	ENST00000389048	NM_004304.4	1082	aAg/aGg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99136555	99136555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	263	404	0	ENST00000074304.5:c.44G>T	p.Arg15Leu	p.R15L	ENST00000074304	NM_001134224.1	15	cGt/cTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537918	212537918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	510	384	0	ENST00000342788.4:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000342788	NM_005235.2	563	Gaa/Aaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125764	47125764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	267	354	0	ENST00000409792.3:c.5506C>T	p.Pro1836Ser	p.P1836S	ENST00000409792	NM_014159.6	1836	Ccg/Tcg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47155370	47155370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	147	523	0	ENST00000409792.3:c.4711C>T	p.Pro1571Ser	p.P1571S	ENST00000409792	NM_014159.6	1571	Cct/Tct																																																																														
MST1R	4486	MSKCC	GRCh37	3	49929248	49929248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	460	581	2	ENST00000296474.3:c.3295G>A	p.Gly1099Arg	p.G1099R	ENST00000296474	NM_002447.2	1099	Gga/Aga																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430309	181430309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	175	221	0	ENST00000325404.1:c.161G>A	p.Gly54Glu	p.G54E	ENST00000325404	NM_003106.3	54	gGg/gAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189584548	189584548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	389	477	0	ENST00000264731.3:c.844G>A	p.Gly282Arg	p.G282R	ENST00000264731	NM_003722.4	282	Gga/Aga																																																																														
KDR	3791	MSKCC	GRCh37	4	55961101	55961101	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	303	479	0	ENST00000263923.4:c.2839C>T	p.Gln947Ter	p.Q947*	ENST00000263923	NM_002253.2	947	Caa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55962398	55962398	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	67	413	0	ENST00000263923.4:c.2726G>A	p.Gly909Glu	p.G909E	ENST00000263923	NM_002253.2	909	gGa/gAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968583	55968583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	98	467	0	ENST00000263923.4:c.2080C>T	p.Pro694Ser	p.P694S	ENST00000263923	NM_002253.2	694	Ccc/Tcc																																																																														
TET2	54790	MSKCC	GRCh37	4	106155778	106155778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	256	358	0	ENST00000380013.4:c.679G>A	p.Glu227Lys	p.E227K	ENST00000380013	NM_001127208.2	227	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630059	187630059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	298	430	0	ENST00000441802.2:c.923C>T	p.Ser308Phe	p.S308F	ENST00000441802	NM_005245.3	308	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630386	187630386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	326	499	0	ENST00000441802.2:c.596C>T	p.Pro199Leu	p.P199L	ENST00000441802	NM_005245.3	199	cCa/cTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1264601	1264601	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	309	480	0	ENST00000310581.5:c.2761C>T	p.Gln921Ter	p.Q921*	ENST00000310581	NM_198253.2	921	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295201	1295201	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	78	127	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	250	159	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112116491	112116491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	181	266	0	ENST00000257430.4:c.536C>T	p.Ser179Phe	p.S179F	ENST00000257430	NM_000038.5	179	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112170771	112170771	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	715	529	0	ENST00000257430.4:c.1867C>G	p.Arg623Gly	p.R623G	ENST00000257430	NM_000038.5	623	Cgg/Ggg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170079	32170079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	237	431	0	ENST00000375023.3:c.3529G>A	p.Gly1177Arg	p.G1177R	ENST00000375023	NM_004557.3	1177	Ggg/Agg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066678	94066678	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1631	483	621	0	ENST00000369303.4:c.1081A>T	p.Asn361Tyr	p.N361Y	ENST00000369303	NM_004440.3	361	Aac/Tac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609759	117609759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1548	336	491	0	ENST00000368508.3:c.6940G>A	p.Asp2314Asn	p.D2314N	ENST00000368508	NM_002944.2	2314	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662627	117662627	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1603	301	469	0	ENST00000368508.3:c.4838T>A	p.Phe1613Tyr	p.F1613Y	ENST00000368508	NM_002944.2	1613	tTt/tAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687430	117687430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	462	375	1	ENST00000368508.3:c.2621A>T	p.Glu874Val	p.E874V	ENST00000368508	NM_002944.2	874	gAa/gTa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202299	138202299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	479	277	0	ENST00000237289.4:c.2216C>T	p.Pro739Leu	p.P739L	ENST00000237289	NM_001270507.1	739	cCc/cTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522556	157522556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1262	308	431	2	ENST00000346085.5:c.4828C>T	p.Pro1610Ser	p.P1610S	ENST00000346085	NM_020732.3	1610	Cct/Tct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527357	157527357	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	633	431	0	ENST00000346085.5:c.5082T>G	p.Ile1694Met	p.I1694M	ENST00000346085	NM_020732.3	1694	atT/atG																																																																														
HGF	3082	MSKCC	GRCh37	7	81392179	81392179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	204	357	0	ENST00000222390.5:c.98G>T	p.Arg33Met	p.R33M	ENST00000222390	NM_000601.4	33	aGg/aTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486281	8486281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	213	333	0	ENST00000356435.5:c.2536C>T	p.Pro846Ser	p.P846S	ENST00000356435		846	Ccg/Tcg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966611	36966611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	503	452	1	ENST00000358127.4:c.715C>T	p.Arg239Cys	p.R239C	ENST00000358127	NM_001280556.1	239	Cgc/Tgc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894928	101894928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	698	514	0	ENST00000374994.4:c.481G>A	p.Glu161Lys	p.E161K	ENST00000374994	NM_004612.2	161	Gaa/Aaa																																																																														
RET	5979	MSKCC	GRCh37	10	43615538	43615538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	215	341	0	ENST00000355710.3:c.2617C>T	p.Arg873Trp	p.R873W	ENST00000355710	NM_020975.4	873	Cgg/Tgg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851953	63851953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	179	259	0	ENST00000279873.7:c.2731C>T	p.Pro911Ser	p.P911S	ENST00000279873	NM_032199.2	911	Ccc/Tcc																																																																														
TET1	80312	MSKCC	GRCh37	10	70446314	70446314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	402	580	0	ENST00000373644.4:c.5254C>T	p.Pro1752Ser	p.P1752S	ENST00000373644	NM_030625.2	1752	Ccc/Tcc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201807	102201807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	366	628	0	ENST00000263464.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000263464	NM_001165.4	387	Gaa/Aaa																																																																														
CBL	867	MSKCC	GRCh37	11	119167741	119167741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	264	375	0	ENST00000264033.4:c.2150C>T	p.Ser717Leu	p.S717L	ENST00000264033	NM_005188.3	717	tCa/tTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18443862	18443862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	224	529	0	ENST00000266497.5:c.835C>T	p.Pro279Ser	p.P279S	ENST00000266497		279	Ccg/Tcg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691098	18691098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	196	369	0	ENST00000266497.5:c.3209C>T	p.Ala1070Val	p.A1070V	ENST00000266497		1070	gCt/gTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432452	49432452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	336	530	0	ENST00000301067.7:c.8687C>T	p.Pro2896Leu	p.P2896L	ENST00000301067	NM_003482.3	2896	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434469	49434469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	212	280	2	ENST00000301067.7:c.7084C>T	p.Pro2362Ser	p.P2362S	ENST00000301067	NM_003482.3	2362	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434936	49434936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	152	224	0	ENST00000301067.7:c.6617C>T	p.Pro2206Leu	p.P2206L	ENST00000301067	NM_003482.3	2206	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445394	49445394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	181	223	0	ENST00000301067.7:c.2072C>T	p.Pro691Leu	p.P691L	ENST00000301067	NM_003482.3	691	cCa/cTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445991	49445991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	336	508	1	ENST00000301067.7:c.1475C>T	p.Ser492Leu	p.S492L	ENST00000301067	NM_003482.3	492	tCg/tTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863272	57863272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	409	603	2	ENST00000228682.2:c.1367G>A	p.Gly456Glu	p.G456E	ENST00000228682	NM_005269.2	456	gGg/gAg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416809	121416809	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs76845985		P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	358	521	4	ENST00000257555.6:c.238G>T	p.Asp80Tyr	p.D80Y	ENST00000257555		80	Gac/Tac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636143	28636143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	287	446	0	ENST00000241453.7:c.229G>A	p.Glu77Lys	p.E77K	ENST00000241453	NM_004119.2	77	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28885782	28885782	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	275	492	0	ENST00000282397.4:c.3580T>G	p.Phe1194Val	p.F1194V	ENST00000282397	NM_002019.4	1194	Ttc/Gtc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893575	28893575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	536	442	0	ENST00000282397.4:c.3271G>A	p.Glu1091Lys	p.E1091K	ENST00000282397	NM_002019.4	1091	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857900	9857900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	284	383	0	ENST00000330684.3:c.3501G>A	p.Met1167Ile	p.M1167I	ENST00000330684	NM_001134407.1	1167	atG/atA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857935	9857935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	290	362	0	ENST00000330684.3:c.3466G>A	p.Glu1156Lys	p.E1156K	ENST00000330684	NM_001134407.1	1156	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	567	367	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271682	15271682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1316	293	510	0	ENST00000263388.2:c.6757G>A	p.Glu2253Lys	p.E2253K	ENST00000263388	NM_000435.2	2253	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272089	15272089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	197	134	1	ENST00000263388.2:c.6350C>T	p.Ser2117Phe	p.S2117F	ENST00000263388	NM_000435.2	2117	tCc/tTc																																																																														
AXL	558	MSKCC	GRCh37	19	41727079	41727079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1210	820	525	0	ENST00000301178.4:c.337G>A	p.Gly113Arg	p.G113R	ENST00000301178	NM_021913.4	113	Gga/Aga																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546725	9546725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	447	314	0	ENST00000353224.5:c.1297C>T	p.Arg433Trp	p.R433W	ENST00000353224	NM_177990.2	433	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827909	40827909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	360	441	1	ENST00000373198.4:c.2519C>T	p.Ser840Phe	p.S840F	ENST00000373198	NM_133170.3	840	tCt/tTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944591	40944592	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	122	273	0	ENST00000373198.4:c.1910_1911delinsAA	p.Arg637Gln	p.R637Q	ENST00000373198	NM_133170.3	637	cGG/cAA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306689	41306689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	260	368	0	ENST00000373198.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000373198	NM_133170.3	324	Gaa/Aaa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268728	46268728	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1627	393	658	0	ENST00000371998.3:c.3013A>T	p.Asn1005Tyr	p.N1005Y	ENST00000371998		1005	Aac/Tac																																																																														
ERG	2078	MSKCC	GRCh37	21	39763629	39763629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	80	364	0	ENST00000288319.7:c.823C>T	p.Pro275Ser	p.P275S	ENST00000288319	NM_182918.3	275	Cca/Tca																																																																														
BTK	695	MSKCC	GRCh37	X	100617194	100617194	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	789	569	1	ENST00000308731.7:c.555A>T	p.Lys185Asn	p.K185N	ENST00000308731	NM_000061.2	185	aaA/aaT																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504128	123504128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	289	478	0	ENST00000371139.4:c.304G>T	p.Val102Phe	p.V102F	ENST00000371139	NM_001114937.2	102	Gtt/Ttt																																																																														
NF1	4763	MSKCC	GRCh37	17	29496919	29496919	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	520	363	0	ENST00000358273.4:c.491del	p.Leu164Ter	p.L164*	ENST00000358273	NM_001042492.2	164	Tta/ta																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	516	307	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	117	267	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35874551	35874551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs201084372		P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	276	435	0	ENST00000303115.3:c.707G>A	p.Gly236Glu	p.G236E	ENST00000303115	NM_002185.3	236	gGg/gAg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	157	392	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693002	89693003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	239	212	0	ENST00000371953.3:c.491dupA	p.Val166SerfsTer14	p.V166Sfs*14	ENST00000371953	NM_000314.4	162	-/A																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32182001	32182001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	369	437	0	ENST00000375023.3:c.2053G>A	p.Gly685Arg	p.G685R	ENST00000375023	NM_004557.3	685	Ggg/Agg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964429	93964429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	235	602	0	ENST00000369303.4:c.2468G>A	p.Gly823Glu	p.G823E	ENST00000369303	NM_004440.3	823	gGa/gAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189587161	189587161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	392	323	0	ENST00000264731.3:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000264731	NM_003722.4	393	cGa/cAa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016292	150016292	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	483	500	0	ENST00000253339.5:c.414T>G	p.Ile138Met	p.I138M	ENST00000253339		138	atT/atG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970939	21970939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			16	11	400	0	ENST00000304494.5:c.419G>A	p.Ser140Asn	p.S140N	ENST00000304494	NM_000077.4	140	aGt/aAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970939	21970939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			16	11	400	0	ENST00000304494.5:c.419G>A	p.Ser140Asn	p.S140N	ENST00000304494	NM_000077.4	140	aGt/aAt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87549125	87549125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	163	394	0	ENST00000277120.3:c.1682G>A	p.Gly561Asp	p.G561D	ENST00000277120		561	gGc/gAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576198	88576198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768882070		P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	133	220	0	ENST00000360948.2:c.1475C>T	p.Ser492Leu	p.S492L	ENST00000360948	NM_001012338.2	492	tCg/tTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45858091	45858091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	158	408	0	ENST00000391945.4:c.1562G>A	p.Gly521Glu	p.G521E	ENST00000391945	NM_000400.3	521	gGg/gAg																																																																														
NF2	4771	MSKCC	GRCh37	22	30069340	30069340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	372	321	0	ENST00000338641.4:c.1205C>T	p.Ala402Val	p.A402V	ENST00000338641	NM_000268.3	402	gCc/gTc																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56772495	56772495	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	328	330	0	ENST00000337432.4:c.350del	p.Leu117Ter	p.L117*	ENST00000337432	NM_058216.2	117	Tta/ta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	185	239	0				ENST00000310581	NM_198253.2																																																																																
ARID2	196528	MSKCC	GRCh37	12	46211585	46211585	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	333	459	0	ENST00000334344.6:c.551C>G	p.Ser184Ter	p.S184*	ENST00000334344	NM_152641.2	184	tCa/tGa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921440	39921462	+	frameshift_variant	Frame_Shift_Del	DEL	CTTATTGACAATAAGTCTCCGTG	CTTATTGACAATAAGTCTCCGTG	-			P-0009174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	302	255	0	ENST00000378444.4:c.4358_4380delCACGGAGACTTATTGTCAATAAG	p.Ala1453GlufsTer16	p.A1453Efs*16	ENST00000378444	NM_001123385.1	1453	gCACGGAGACTTATTGTCAATAAG/g																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0009177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	262	537	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158630630	158630630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1591	167	774	1	ENST00000263640.3:c.613G>A	p.Ala205Thr	p.A205T	ENST00000263640	NM_001105.4	205	Gct/Act																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0009177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	138	176	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0009177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	170	280	0				ENST00000310581	NM_198253.2																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11097608	11097608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1381	338	636	0	ENST00000344626.4:c.788C>T	p.Pro263Leu	p.P263L	ENST00000344626	NM_003072.3	263	cCa/cTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757428	40757428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	224	488	0	ENST00000373198.4:c.2870C>T	p.Pro957Leu	p.P957L	ENST00000373198	NM_133170.3	957	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579314	7579315	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0009177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	194	357	0	ENST00000269305.4:c.371_372dup	p.Thr125AlafsTer46	p.T125Afs*46	ENST00000269305	NM_001126112.2	124	-/GC																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571838	64571839	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0009177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1505	483	852	0	ENST00000337652.1:c.1815_1816del	p.Ser606PhefsTer77	p.S606Ffs*77	ENST00000337652	NM_130803.2	605	ctGTct/ctct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	19	66	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	19	66	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	59	219	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138944	64138944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	36	147	0	ENST00000334205.4:c.2311C>T	p.Pro771Ser	p.P771S	ENST00000334205	NM_003942.2	771	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578289	7578289	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	44	164	0	ENST00000269305.4:c.560G>A	p.Gly187Asp	p.G187D	ENST00000269305	NM_001126112.2	187	gGt/gAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292570	15292570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	33	155	1	ENST00000263388.2:c.2609C>T	p.Ser870Phe	p.S870F	ENST00000263388	NM_000435.2	870	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416417	49416417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	21	179	1	ENST00000301067.7:c.16294C>T	p.Arg5432Trp	p.R5432W	ENST00000301067	NM_003482.3	5432	Cgg/Tgg																																																																														
TP63	8626	MSKCC	GRCh37	3	189590732	189590732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	66	209	0	ENST00000264731.3:c.1297G>A	p.Glu433Lys	p.E433K	ENST00000264731	NM_003722.4	433	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	41	122	0				ENST00000310581	NM_198253.2																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	50	152	0	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	85	351	0	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458612	120458612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	52	134	0	ENST00000256646.2:c.6733C>T	p.His2245Tyr	p.H2245Y	ENST00000256646	NM_024408.3	2245	Cat/Tat																																																																														
RIT1	6016	MSKCC	GRCh37	1	155880249	155880249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	45	163	0	ENST00000368323.3:c.155C>T	p.Pro52Leu	p.P52L	ENST00000368323	NM_006912.5	52	cCc/cTc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846241	156846241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	45	170	0	ENST00000524377.1:c.1682C>T	p.Ala561Val	p.A561V	ENST00000524377	NM_002529.3	561	gCt/gTt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26029123	26029123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	132	224	0	ENST00000435504.4:c.227G>A	p.Gly76Asp	p.G76D	ENST00000435504		76	gGt/gAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426738	212426738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	21	144	0	ENST00000342788.4:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000342788	NM_005235.2	793	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259578	89259578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	22	89	0	ENST00000336596.2:c.722G>A	p.Arg241Lys	p.R241K	ENST00000336596	NM_005233.5	241	aGg/aAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480430	89480430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	32	209	0	ENST00000336596.2:c.2267G>A	p.Ser756Asn	p.S756N	ENST00000336596	NM_005233.5	756	aGt/aAt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461594	138461594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	43	164	0	ENST00000289153.2:c.427C>T	p.Pro143Ser	p.P143S	ENST00000289153	NM_006219.2	143	Cct/Tct																																																																														
ATR	545	MSKCC	GRCh37	3	142215886	142215886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	65	177	1	ENST00000350721.4:c.5707C>T	p.Leu1903Phe	p.L1903F	ENST00000350721	NM_001184.3	1903	Ctc/Ttc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916813	178916813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	122	364	1	ENST00000263967.3:c.200C>T	p.Ser67Phe	p.S67F	ENST00000263967	NM_006218.2	67	tCt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927441	178927441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	85	189	0	ENST00000263967.3:c.1204C>T	p.Leu402Phe	p.L402F	ENST00000263967	NM_006218.2	402	Ctt/Ttt																																																																														
KDR	3791	MSKCC	GRCh37	4	55984966	55984966	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	45	141	0	ENST00000263923.4:c.163G>A	p.Gly55Arg	p.G55R	ENST00000263923	NM_002253.2	55	Gga/Aga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286274	66286274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143584300		P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	43	153	0	ENST00000273854.3:c.1412C>T	p.Pro471Leu	p.P471L	ENST00000273854	NM_004439.5	471	cCa/cTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467448	66467448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	21	123	0	ENST00000273854.3:c.821T>A	p.Met274Lys	p.M274K	ENST00000273854	NM_004439.5	274	aTg/aAg																																																																														
TET2	54790	MSKCC	GRCh37	4	106157597	106157597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	48	229	0	ENST00000380013.4:c.2498C>T	p.Ser833Phe	p.S833F	ENST00000380013	NM_001127208.2	833	tCt/tTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541040	187541040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	18	117	1	ENST00000441802.2:c.6700G>A	p.Gly2234Arg	p.G2234R	ENST00000441802	NM_005245.3	2234	Gga/Aga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38962607	38962607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	50	182	0	ENST00000357387.3:c.1648C>T	p.Leu550Phe	p.L550F	ENST00000357387	NM_152756.3	550	Ctt/Ttt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696688	176696688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	33	192	0	ENST00000439151.2:c.5389C>T	p.Leu1797Phe	p.L1797F	ENST00000439151	NM_022455.4	1797	Ctc/Ttc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681552	117681552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	66	243	0	ENST00000368508.3:c.3398C>A	p.Ser1133Tyr	p.S1133Y	ENST00000368508	NM_002944.2	1133	tCt/tAt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508037	106508037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	11	89	0	ENST00000359195.3:c.31G>A	p.Val11Met	p.V11M	ENST00000359195	NM_002649.2	11	Gtg/Atg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482208	87482208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	52	199	0	ENST00000277120.3:c.1495C>T	p.His499Tyr	p.H499Y	ENST00000277120		499	Cac/Tac																																																																														
FANCC	2176	MSKCC	GRCh37	9	98011453	98011453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	66	201	0	ENST00000289081.3:c.121T>C	p.Phe41Leu	p.F41L	ENST00000289081	NM_000136.2	41	Ttc/Ctc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139802585	139802585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	81	259	0	ENST00000247668.2:c.430C>T	p.Arg144Cys	p.R144C	ENST00000247668	NM_021138.3	144	Cgc/Tgc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104268951	104268951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	71	255	0	ENST00000369902.3:c.208T>C	p.Tyr70His	p.Y70H	ENST00000369902	NM_016169.3	70	Tat/Cat																																																																														
CBL	867	MSKCC	GRCh37	11	119077306	119077306	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	72	223	0	ENST00000264033.4:c.179G>A	p.Trp60Ter	p.W60*	ENST00000264033	NM_005188.3	60	tGg/tAg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12006438	12006438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	28	253	1	ENST00000396373.4:c.406C>T	p.Pro136Ser	p.P136S	ENST00000396373	NM_001987.4	136	Cct/Tct																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856415	111856415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	46	132	0	ENST00000341259.2:c.466G>A	p.Ala156Thr	p.A156T	ENST00000341259	NM_005475.2	156	Gcg/Acg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906773	32906773	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	63	252	0	ENST00000380152.3:c.1158A>C	p.Glu386Asp	p.E386D	ENST00000380152		386	gaA/gaC																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606063	81606063	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189506473		P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	53	205	0	ENST00000298171.2:c.733G>A	p.Gly245Ser	p.G245S	ENST00000298171	NM_000369.2	245	Ggc/Agc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610464	81610464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	44	209	0	ENST00000298171.2:c.2062G>A	p.Asp688Asn	p.D688N	ENST00000298171	NM_000369.2	688	Gat/Aat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476286	88476286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	50	164	0	ENST00000360948.2:c.1846G>A	p.Val616Ile	p.V616I	ENST00000360948	NM_001012338.2	616	Gtc/Atc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	359974	359974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	51	270	0	ENST00000262320.3:c.1115C>T	p.Pro372Leu	p.P372L	ENST00000262320	NM_003502.3	372	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857076	9857076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	44	190	0	ENST00000330684.3:c.4325C>T	p.Pro1442Leu	p.P1442L	ENST00000330684	NM_001134407.1	1442	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821158	72821158	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	57	301	0	ENST00000268489.5:c.11017G>C	p.Asp3673His	p.D3673H	ENST00000268489	NM_006885.3	3673	Gac/Cac																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30322710	30322710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	52	208	0	ENST00000322652.5:c.1723C>T	p.Arg575Cys	p.R575C	ENST00000322652	NM_015355.2	575	Cgt/Tgt																																																																														
BCL2	596	MSKCC	GRCh37	18	60795940	60795940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	31	152	0	ENST00000333681.4:c.638C>T	p.Ser213Phe	p.S213F	ENST00000333681		213	tCc/tTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211121	2211121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	19	197	0	ENST00000398665.3:c.1375C>T	p.Pro459Ser	p.P459S	ENST00000398665	NM_032482.2	459	Ccg/Tcg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296139	15296139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	38	178	0	ENST00000263388.2:c.2225C>T	p.Pro742Leu	p.P742L	ENST00000263388	NM_000435.2	742	cCg/cTg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257880	19257880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	47	236	0	ENST00000162023.5:c.506C>T	p.Pro169Leu	p.P169L	ENST00000162023		169	cCc/cTc																																																																														
BBC3	27113	MSKCC	GRCh37	19	47725025	47725025	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199804290		P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	21	231	0	ENST00000449228.1:c.719C>T	p.Ser240Leu	p.S240L	ENST00000449228	NM_001127240.2	240	tCg/tTg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523329	9523329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	40	221	0	ENST00000353224.5:c.1908G>A	p.Met636Ile	p.M636I	ENST00000353224	NM_177990.2	636	atG/atA																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023214	31023214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	49	212	0	ENST00000375687.4:c.2699C>T	p.Pro900Leu	p.P900L	ENST00000375687	NM_015338.5	900	cCc/cTc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46252712	46252712	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	73	320	0	ENST00000371998.3:c.141A>C	p.Glu47Asp	p.E47D	ENST00000371998		47	gaA/gaC																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913268	39913268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	72	102	0	ENST00000378444.4:c.4847T>C	p.Val1616Ala	p.V1616A	ENST00000378444	NM_001123385.1	1616	gTt/gCt																																																																														
ATRX	546	MSKCC	GRCh37	X	76778858	76778858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	103	165	0	ENST00000373344.5:c.6721C>T	p.Leu2241Phe	p.L2241F	ENST00000373344	NM_000489.3	2241	Ctt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579351	7579351	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	31	138	0	ENST00000269305.4:c.336del	p.Phe113SerfsTer10	p.F113Sfs*10	ENST00000269305	NM_001126112.2	112	ggC/gg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659924	227659924	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	58	276	0	ENST00000305123.5:c.3531del	p.Asn1178ThrfsTer3	p.N1178Tfs*3	ENST00000305123	NM_005544.2	1177	ctT/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056220	27056221	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	73	170	0	ENST00000324856.7:c.1216_1217delinsAC	p.Gly406Thr	p.G406T	ENST00000324856	NM_006015.4	406	GGa/ACa																																																																														
PARP1	142	MSKCC	GRCh37	1	226570780	226570781	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	28	107	0	ENST00000366794.5:c.1115_1116delinsTT	p.Ser372Phe	p.S372F	ENST00000366794	NM_001618.3	372	tCC/tTT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405868	157405869	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	52	143	0	ENST00000346085.5:c.2110_2111delinsAA	p.Gly704Lys	p.G704K	ENST00000346085	NM_020732.3	704	GGg/AAg																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345844	152345845	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	133	324	0	ENST00000359321.1:c.725_726delinsTT	p.Ser242Phe	p.S242F	ENST00000359321	NM_005431.1	242	tCC/tTT																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128008	30128009	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	48	251	0	ENST00000263025.4:c.1120_1121delinsAA	p.Gly374Lys	p.G374K	ENST00000263025	NM_002746.2	374	GGa/AAa																																																																														
CD79B	974	MSKCC	GRCh37	17	62007607	62007608	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	26	173	0	ENST00000392795.3:c.259_260delinsTT	p.Pro87Phe	p.P87F	ENST00000392795	NM_001039933.1	87	CCc/TTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296139	15296140	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	40	173	2	ENST00000263388.2:c.2224_2225delinsTT	p.Pro742Leu	p.P742L	ENST00000263388	NM_000435.2	742	CCg/TTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144036	11144037	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	14	160	0	ENST00000344626.4:c.3617_3618delinsTT	p.Thr1206Ile	p.T1206I	ENST00000344626	NM_003072.3	1206	aCC/aTT																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375495	15375496	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	52	234	0	ENST00000263377.2:c.931_932delinsTT	p.Pro311Leu	p.P311L	ENST00000263377	NM_058243.2	311	CCg/TTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42793058	42793059	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	10	140	0	ENST00000575354.2:c.950_951delinsTT	p.Ser317Phe	p.S317F	ENST00000575354	NM_015125.3	317	tCC/tTT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0009189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	19	66	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	70	117	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	70	117	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	41	128	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	161	377	3	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	76	349	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	88	375	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	71	185	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	101	333	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1087	65	453	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268045	55268045	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144496976		P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	124	471	1	ENST00000275493.2:c.2885G>A	p.Arg962His	p.R962H	ENST00000275493	NM_005228.3	962	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107200	27107200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	78	296	0	ENST00000324856.7:c.6811G>A	p.Val2271Ile	p.V2271I	ENST00000324856	NM_006015.4	2271	Gtt/Att																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120508181	120508181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	328	342	0	ENST00000256646.2:c.1576G>A	p.Gly526Arg	p.G526R	ENST00000256646	NM_024408.3	526	Ggg/Agg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845922	156845922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	262	509	2	ENST00000524377.1:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000524377	NM_002529.3	518	Gag/Aag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967246	25967246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	105	313	0	ENST00000435504.4:c.1960G>A	p.Ala654Thr	p.A654T	ENST00000435504		654	Gcc/Acc																																																																														
ALK	238	MSKCC	GRCh37	2	29519805	29519805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	204	350	0	ENST00000389048.3:c.1766G>A	p.Gly589Asp	p.G589D	ENST00000389048	NM_004304.4	589	gGc/gAc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138478026	138478026	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	112	448	0	ENST00000289153.2:c.160T>A	p.Tyr54Asn	p.Y54N	ENST00000289153	NM_006219.2	54	Tat/Aat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55153705	55153705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	80	403	0	ENST00000257290.5:c.2671C>T	p.Leu891Phe	p.L891F	ENST00000257290	NM_006206.4	891	Ctt/Ttt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518900	187518900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	76	421	1	ENST00000441802.2:c.12304G>A	p.Gly4102Arg	p.G4102R	ENST00000441802	NM_005245.3	4102	Gga/Aga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056748	180056748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	93	505	0	ENST00000261937.6:c.764G>A	p.Trp255Ter	p.W255*	ENST00000261937	NM_182925.4	255	tGg/tAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120779	94120779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	483	611	0	ENST00000369303.4:c.272C>T	p.Ser91Phe	p.S91F	ENST00000369303	NM_004440.3	91	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117630029	117630029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	272	408	0	ENST00000368508.3:c.6497C>T	p.Ser2166Phe	p.S2166F	ENST00000368508	NM_002944.2	2166	tCc/tTc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265520	152265520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	133	242	0	ENST00000206249.3:c.973C>T	p.Pro325Ser	p.P325S	ENST00000206249	NM_000125.3	325	Ccg/Tcg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431653	6431653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	51	274	0	ENST00000356142.4:c.206C>T	p.Pro69Leu	p.P69L	ENST00000356142	NM_018890.3	69	cCc/cTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273083	55273083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	226	325	0	ENST00000275493.2:c.3406C>G	p.Pro1136Ala	p.P1136A	ENST00000275493	NM_005228.3	1136	Ccc/Gcc																																																																														
SMO	6608	MSKCC	GRCh37	7	128829225	128829225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	92	308	0	ENST00000249373.3:c.233G>A	p.Cys78Tyr	p.C78Y	ENST00000249373	NM_005631.4	78	tGc/tAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879120	151879120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	84	363	0	ENST00000262189.6:c.5825C>T	p.Thr1942Ile	p.T1942I	ENST00000262189	NM_170606.2	1942	aCa/aTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485972	8485972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	133	479	0	ENST00000356435.5:c.2845G>A	p.Gly949Ser	p.G949S	ENST00000356435		949	Ggc/Agc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80537195	80537195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	58	182	0	ENST00000286548.4:c.203C>T	p.Ser68Phe	p.S68F	ENST00000286548	NM_002072.3	68	tCt/tTt																																																																														
ABL1	25	MSKCC	GRCh37	9	133760096	133760096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	335	324	0	ENST00000318560.5:c.2419G>A	p.Gly807Ser	p.G807S	ENST00000318560	NM_005157.4	807	Ggc/Agc																																																																														
PGR	5241	MSKCC	GRCh37	11	100909932	100909932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	391	523	1	ENST00000325455.5:c.2717C>T	p.Pro906Leu	p.P906L	ENST00000325455	NM_001202474.3	906	cCa/cTa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426835	121426835	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	73	266	0	ENST00000257555.6:c.526C>T	p.Gln176Ter	p.Q176*	ENST00000257555		176	Cag/Tag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563266	21563266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	106	368	0	ENST00000382592.4:c.653G>A	p.Gly218Glu	p.G218E	ENST00000382592	NM_014572.2	218	gGa/gAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913641	32913641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	133	559	0	ENST00000380152.3:c.5149G>A	p.Glu1717Lys	p.E1717K	ENST00000380152		1717	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	42059287	42059287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1457	117	535	1	ENST00000219905.7:c.9007G>T	p.Ala3003Ser	p.A3003S	ENST00000219905	NM_001164273.1	3003	Gca/Tca																																																																														
CD276	80381	MSKCC	GRCh37	15	73994617	73994617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	76	282	0	ENST00000318443.5:c.101C>T	p.Pro34Leu	p.P34L	ENST00000318443	NM_001024736.1	34	cCt/cTt																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129372	30129372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	96	426	0	ENST00000263025.4:c.656C>T	p.Ser219Phe	p.S219F	ENST00000263025	NM_002746.2	219	tCc/tTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094856	11094856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	123	476	0	ENST00000344626.4:c.29G>A	p.Gly10Glu	p.G10E	ENST00000344626	NM_003072.3	10	gGa/gAa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525018	9525018	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	92	296	0	ENST00000353224.5:c.1867G>A	p.Glu623Lys	p.E623K	ENST00000353224	NM_177990.2	623	Gag/Aag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561223	9561223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	82	364	1	ENST00000353224.5:c.559C>T	p.Pro187Ser	p.P187S	ENST00000353224	NM_177990.2	187	Cct/Tct																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650406	48650406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	127	290	1	ENST00000376670.3:c.376G>A	p.Gly126Arg	p.G126R	ENST00000376670	NM_002049.3	126	Gga/Aga																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108230	8108231	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	101	357	0	ENST00000585124.1:c.993_994del	p.Arg332GlufsTer31	p.R332Efs*31	ENST00000585124	NM_004217.3	331	tcTCgg/tcgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401813	139401813	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	137	412	0	ENST00000277541.6:c.3587del	p.Gly1196AlafsTer249	p.G1196Afs*249	ENST00000277541	NM_017617.3	1196	gGc/gc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	85	324	3	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843498	156843514	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGGCACCGTCTCTGC	GCCGGCACCGTCTCTGC	-			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	208	363	0	ENST00000524377.1:c.926_942del	p.Pro309LeufsTer10	p.P309Lfs*10	ENST00000524377	NM_002529.3	308	caGCCGGCACCGTCTCTGCgc/cagc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698102	47698119	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGCAAATTGACTTCTTTA	AGCAAATTGACTTCTTTA	-			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	131	319	0	ENST00000233146.2:c.1662-1_1678del		p.X554_splice	ENST00000233146	NM_000251.2	554																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412380	139412381	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	211	200	0	ENST00000277541.6:c.1264_1265delinsTT	p.Pro422Phe	p.P422F	ENST00000277541	NM_017617.3	422	CCc/TTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524144	187524147	+	frameshift_variant	Frame_Shift_Del	DEL	ACGG	ACGG	CAA			P-0009258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	277	358	0	ENST00000441802.2:c.11392_11395delinsTTG	p.Pro3798LeufsTer35	p.P3798Lfs*35	ENST00000441802	NM_005245.3	3798	CCGTgc/TTGgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	93	145	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	37	254	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	93	191	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949758	151949758	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	408	452	0	ENST00000262189.6:c.1342C>T	p.Gln448Ter	p.Q448*	ENST00000262189	NM_170606.2	448	Cag/Tag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098966	178098966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	76	318	0	ENST00000397062.3:c.79G>T	p.Asp27Tyr	p.D27Y	ENST00000397062	NM_006164.4	27	Gat/Tat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518173	187518173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	237	412	3	ENST00000441802.2:c.12521C>T	p.Pro4174Leu	p.P4174L	ENST00000441802	NM_005245.3	4174	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175555	112175555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	249	466	0	ENST00000257430.4:c.4264G>A	p.Asp1422Asn	p.D1422N	ENST00000257430	NM_000038.5	1422	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168740	32168740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1367	154	488	0	ENST00000375023.3:c.4183G>A	p.Asp1395Asn	p.D1395N	ENST00000375023	NM_004557.3	1395	Gac/Aac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674222	117674222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	132	594	1	ENST00000368508.3:c.4252G>A	p.Val1418Ile	p.V1418I	ENST00000368508	NM_002944.2	1418	Gtt/Att																																																																														
RAD21	5885	MSKCC	GRCh37	8	117866632	117866632	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1518	551	763	0	ENST00000297338.2:c.1013G>C	p.Arg338Thr	p.R338T	ENST00000297338	NM_006265.2	338	aGa/aCa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402720	139402720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	107	382	0	ENST00000277541.6:c.3289C>T	p.Pro1097Ser	p.P1097S	ENST00000277541	NM_017617.3	1097	Ccc/Tcc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413085	139413085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	260	470	0	ENST00000277541.6:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000277541	NM_017617.3	353	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434240	49434240	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1398	299	686	0	ENST00000301067.7:c.7313C>G	p.Ser2438Ter	p.S2438*	ENST00000301067	NM_003482.3	2438	tCa/tGa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865540	57865540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1524	173	678	0	ENST00000228682.2:c.3017G>A	p.Gly1006Asp	p.G1006D	ENST00000228682	NM_005269.2	1006	gGc/gAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95597845	95597845	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	88	410	0	ENST00000343455.3:c.438+1G>T		p.X146_splice	ENST00000343455	NM_177438.2	146																																																																															
B2M	567	MSKCC	GRCh37	15	45003787	45003787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	200	476	0	ENST00000558401.1:c.43C>T	p.Leu15Phe	p.L15F	ENST00000558401	NM_004048.2	15	Ctt/Ttt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99472879	99472879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	109	458	0	ENST00000268035.6:c.2875C>T	p.His959Tyr	p.H959Y	ENST00000268035	NM_000875.3	959	Cat/Tat																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475330	40475330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1375	717	729	0	ENST00000264657.5:c.1696G>C	p.Asp566His	p.D566H	ENST00000264657	NM_139276.2	566	Gac/Cac																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22221634	22221634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	116	266	0	ENST00000215832.6:c.97G>C	p.Glu33Gln	p.E33Q	ENST00000215832	NM_002745.4	33	Gag/Cag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971154	21971188	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGG	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGG	-			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	100	169	0	ENST00000304494.5:c.170_204delCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCG	p.Ala57GlyfsTer51	p.A57Gfs*51	ENST00000304494	NM_000077.4	57	gCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971154	21971188	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGG	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGG	-			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	100	169	0	ENST00000304494.5:c.170_204delCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCG	p.Ala57GlyfsTer51	p.A57Gfs*51	ENST00000304494	NM_000077.4	57	gCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971154	21971188	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGG	CGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGG	-			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	100	169	0	ENST00000304494.5:c.170_204delCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCG	p.Ala57GlyfsTer51	p.A57Gfs*51	ENST00000304494	NM_000077.4	57	gCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCG/g																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412496	139412716	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGGGCACCCCCTGAAGCCAGAATCGACTTCTCATCGGTTCTGGGGCCAGGCTGCCACCCCCACCTGGCCGCACCCCCTGTGCTGGCACCTACCCAGCGAGCACTCATCCACGTCCTGGCTGCAGGCCGGGCCCGTGTACCCCGAGGGGCAGGTGCAGATGGCCTTGCCATTGACAGGGTTGGTGTCGCAGTTGGAGCCCTCGTTACAGGGGTTGCTGATG	CTGGGCACCCCCTGAAGCCAGAATCGACTTCTCATCGGTTCTGGGGCCAGGCTGCCACCCCCACCTGGCCGCACCCCCTGTGCTGGCACCTACCCAGCGAGCACTCATCCACGTCCTGGCTGCAGGCCGGGCCCGTGTACCCCGAGGGGCAGGTGCAGATGGCCTTGCCATTGACAGGGTTGGTGTCGCAGTTGGAGCCCTCGTTACAGGGGTTGCTGATG	-			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	64	115	0	ENST00000277541.6:c.1128_1255+93del		p.X376_splice	ENST00000277541	NM_017617.3	376																																																																															
BCL2L11	10018	MSKCC	GRCh37	2	111881608	111881609	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	216	448	0	ENST00000393256.3:c.287dupA	p.Tyr96Ter	p.Y96*	ENST00000393256	NM_006538.4	96	tat/tAat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151851469	151851469	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1275	281	489	0	ENST00000262189.6:c.12022delG	p.Glu4008ArgfsTer6	p.E4008Rfs*6	ENST00000262189	NM_170606.2	4008	Gag/ag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	530	280	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0009292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	663	291	0				ENST00000310581	NM_198253.2																																																																																
PHOX2B	8929	MSKCC	GRCh37	4	41748206	41748206	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	104	491	0	ENST00000226382.2:c.563A>C	p.Lys188Thr	p.K188T	ENST00000226382	NM_003924.3	188	aAg/aCg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460581	149460581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	188	206	0	ENST00000286301.3:c.56G>C	p.Gly19Ala	p.G19A	ENST00000286301	NM_005211.3	19	gGa/gCa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915886	127915886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	427	639	2	ENST00000373547.4:c.595C>T	p.Pro199Ser	p.P199S	ENST00000373547	NM_002721.4	199	Cct/Tct																																																																														
WT1	7490	MSKCC	GRCh37	11	32414232	32414232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	549	494	0	ENST00000332351.3:c.1319G>A	p.Arg440Lys	p.R440K	ENST00000332351	NM_024426.4	440	aGa/aAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993158	72993158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	300	742	0	ENST00000268489.5:c.887C>T	p.Ser296Leu	p.S296L	ENST00000268489	NM_006885.3	296	tCg/tTg																																																																														
RB1	5925	MSKCC	GRCh37	13	49030442	49030443	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	AT			P-0009292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	734	243	0	ENST00000267163.4:c.1917_1918delinsAT	p.Lys640Ter	p.K640*	ENST00000267163	NM_000321.2	639	caGAag/caATag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579472	7579475	+	frameshift_variant	Frame_Shift_Del	DEL	GGGG	GGGG	CGA			P-0009292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	351	261	0	ENST00000269305.4:c.212_215delinsTCG	p.Pro71LeufsTer52	p.P71Lfs*52	ENST00000269305	NM_001126112.2	71	cCCCCc/cTCGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0009308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	165	176	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0009308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	300	379	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	504	572	1	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	216	190	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	161	143	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	161	143	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	161	143	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	323	512	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	12	7	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	372	496	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
BLM	641	MSKCC	GRCh37	15	91312725	91312725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	457	570	1	ENST00000355112.3:c.2464C>T	p.Pro822Ser	p.P822S	ENST00000355112	NM_000057.2	822	Cct/Tct																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874636	35874636	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	352	530	2	ENST00000303115.3:c.792G>A	p.Trp264Ter	p.W264*	ENST00000303115	NM_002185.3	264	tgG/tgA																																																																														
SPEN	23013	MSKCC	GRCh37	1	16245996	16245996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	401	484	0	ENST00000375759.3:c.1619A>G	p.Tyr540Cys	p.Y540C	ENST00000375759	NM_015001.2	540	tAt/tGt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259481	16259481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	115	254	0	ENST00000375759.3:c.6746C>T	p.Pro2249Leu	p.P2249L	ENST00000375759	NM_015001.2	2249	cCc/cTc																																																																														
RHOA	387	MSKCC	GRCh37	3	49405872	49405872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	501	600	0	ENST00000418115.1:c.266C>T	p.Pro89Leu	p.P89L	ENST00000418115	NM_001664.2	89	cCt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112176150	112176150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	213	519	0	ENST00000257430.4:c.4859C>T	p.Ser1620Leu	p.S1620L	ENST00000257430	NM_000038.5	1620	tCa/tTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266434	55266434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	357	542	1	ENST00000275493.2:c.2726C>T	p.Thr909Ile	p.T909I	ENST00000275493	NM_005228.3	909	aCc/aTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515196	106515196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	303	426	0	ENST00000359195.3:c.2339C>T	p.Pro780Leu	p.P780L	ENST00000359195	NM_002649.2	780	cCc/cTc																																																																														
CCND1	595	MSKCC	GRCh37	11	69462881	69462881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4827	499	514	0	ENST00000227507.2:c.694T>C	p.Phe232Leu	p.F232L	ENST00000227507	NM_053056.2	232	Ttc/Ctc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118353140	118353140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	417	675	1	ENST00000534358.1:c.4016C>T	p.Pro1339Leu	p.P1339L	ENST00000534358	NM_005933.3	1339	cCa/cTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499655	18499655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	357	614	0	ENST00000266497.5:c.1510G>A	p.Asp504Asn	p.D504N	ENST00000266497		504	Gat/Aat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245288	46245288	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	252	311	0	ENST00000334344.6:c.3382C>T	p.Gln1128Ter	p.Q1128*	ENST00000334344	NM_152641.2	1128	Cag/Tag																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811762	102811762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	336	494	0	ENST00000307046.8:c.422A>G	p.Asn141Ser	p.N141S	ENST00000307046	NM_001111285.1	141	aAc/aGc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590938	95590938	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	207	327	0	ENST00000343455.3:c.971T>G	p.Met324Arg	p.M324R	ENST00000343455	NM_177438.2	324	aTg/aGg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66777374	66777374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	453	599	0	ENST00000307102.5:c.740G>A	p.Trp247Ter	p.W247*	ENST00000307102	NM_002755.3	247	tGg/tAg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59853794	59853794	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	421	619	1	ENST00000259008.2:c.2065C>T	p.Gln689Ter	p.Q689*	ENST00000259008	NM_032043.2	689	Caa/Taa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59937198	59937198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	368	568	0	ENST00000259008.2:c.164C>T	p.Ala55Val	p.A55V	ENST00000259008	NM_032043.2	55	gCc/gTc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3120989	3120989	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	141	228	0	ENST00000078429.4:c.892C>T	p.Pro298Ser	p.P298S	ENST00000078429	NM_002067.2	298	Ccc/Tcc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303241	15303241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	269	487	1	ENST00000263388.2:c.287C>T	p.Ser96Leu	p.S96L	ENST00000263388	NM_000435.2	96	tCa/tTa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349616	15349616	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	150	357	0	ENST00000263377.2:c.3958A>T	p.Met1320Leu	p.M1320L	ENST00000263377	NM_058243.2	1320	Atg/Ttg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953858	17953858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	299	392	0	ENST00000458235.1:c.544G>A	p.Gly182Arg	p.G182R	ENST00000458235	NM_000215.3	182	Gga/Aga																																																																														
TOP1	7150	MSKCC	GRCh37	20	39746874	39746874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	168	216	0	ENST00000361337.2:c.1888T>C	p.Cys630Arg	p.C630R	ENST00000361337	NM_003286.2	630	Tgt/Cgt																																																																														
EP300	2033	MSKCC	GRCh37	22	41521893	41521893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	321	548	0	ENST00000263253.7:c.755C>T	p.Pro252Leu	p.P252L	ENST00000263253	NM_001429.3	252	cCt/cTt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66736993	66736994	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	264	338	0	ENST00000307102.5:c.517-1_517delinsAA		p.X173_splice	ENST00000307102	NM_002755.3	173																																																																															
NF1	4763	MSKCC	GRCh37	17	29422354	29422355	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0009311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	370	462	0	ENST00000358273.4:c.27_28delinsAA	p.Trp9_Val10delinsTer	p.W9_V10delins*	ENST00000358273	NM_001042492.2	9	tgGGtc/tgAAtc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	35	141	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	100	376	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914037	32914037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1194	192	941	1	ENST00000380152.3:c.5545G>A	p.Gly1849Ser	p.G1849S	ENST00000380152		1849	Ggt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	97	412	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	116	382	0	ENST00000171111.5:c.959G>T	p.Arg320Leu	p.R320L	ENST00000171111	NM_203500.1	320	cGg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971180	21971180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	41	126	0	ENST00000304494.5:c.178delG	p.Ala60ArgfsTer86	p.A60Rfs*86	ENST00000304494	NM_000077.4	60	Gcg/cg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971180	21971180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	41	126	0	ENST00000304494.5:c.178delG	p.Ala60ArgfsTer86	p.A60Rfs*86	ENST00000304494	NM_000077.4	60	Gcg/cg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971180	21971180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	41	126	0	ENST00000304494.5:c.178delG	p.Ala60ArgfsTer86	p.A60Rfs*86	ENST00000304494	NM_000077.4	60	Gcg/cg																																																																														
SDHB	6390	MSKCC	GRCh37	1	17354353	17354353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	94	385	0	ENST00000375499.3:c.431G>T	p.Ser144Ile	p.S144I	ENST00000375499	NM_003000.2	144	aGc/aTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001915	29001915	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	77	481	0	ENST00000282397.4:c.1250A>C	p.Asn417Thr	p.N417T	ENST00000282397	NM_002019.4	417	aAc/aCc																																																																														
STK11	6794	MSKCC	GRCh37	19	1207009	1207009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	89	304	0	ENST00000326873.7:c.97G>T	p.Glu33Ter	p.E33*	ENST00000326873	NM_000455.4	33	Gag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11130288	11130309	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTTTGTCCCCCAGCTCCGGA	GCCTTTGTCCCCCAGCTCCGGA	-			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	101	422	0	ENST00000344626.4:c.2528_2549del	p.Ala843ValfsTer8	p.A843Vfs*8	ENST00000344626	NM_003072.3	843	GCCTTTGTCCCCCAGCTCCGGAgt/gt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039434	47039443	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCGTGGTGA	ATCGTGGTGA	-			P-0009379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	111	194	0	ENST00000329236.7:c.826_828+7del		p.X276_splice	ENST00000329236	NM_001204466.1	276																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	42	210	1				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	46	277	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	349	409	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	86	344	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480469	89480469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	83	411	1	ENST00000336596.2:c.2306G>A	p.Arg769His	p.R769H	ENST00000336596	NM_005233.5	769	cGt/cAt																																																																														
ALK	238	MSKCC	GRCh37	2	29462683	29462683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	86	375	0	ENST00000389048.3:c.2218G>A	p.Gly740Arg	p.G740R	ENST00000389048	NM_004304.4	740	Gga/Aga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562787	21562787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	73	167	3	ENST00000382592.4:c.1132C>T	p.Arg378Trp	p.R378W	ENST00000382592	NM_014572.2	378	Cgg/Tgg																																																																														
CIC	23152	MSKCC	GRCh37	19	42792096	42792096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	41	251	0	ENST00000575354.2:c.900G>A	p.Met300Ile	p.M300I	ENST00000575354	NM_015125.3	300	atG/atA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	345	308	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96920640	96920640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	246	392	0	ENST00000258439.3:c.340G>C	p.Asp114His	p.D114H	ENST00000258439	NM_001193304.2	114	Gat/Cat																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99156116	99156116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	153	260	0	ENST00000074304.5:c.796C>G	p.Leu266Val	p.L266V	ENST00000074304	NM_001134224.1	266	Cta/Gta																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157488319	157488319	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	244	163	0	ENST00000346085.5:c.3025G>T	p.Ala1009Ser	p.A1009S	ENST00000346085	NM_020732.3	1009	Gca/Tca																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729633	41729633	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	887	611	1	ENST00000242208.4:c.896A>T	p.Gln299Leu	p.Q299L	ENST00000242208	NM_002192.2	299	cAg/cTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5029838	5029838	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	108	443	0	ENST00000381652.3:c.282C>G	p.Ile94Met	p.I94M	ENST00000381652	NM_004972.3	94	atC/atG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	266	169	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	266	169	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772709	135772709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	629	504	0	ENST00000298552.3:c.2837G>A	p.Ser946Asn	p.S946N	ENST00000298552	NM_001162426.1	946	aGc/aAc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998747	100998747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	670	532	1	ENST00000325455.5:c.1055C>A	p.Pro352Gln	p.P352Q	ENST00000325455	NM_001202474.3	352	cCg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416417	49416417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	206	357	0	ENST00000301067.7:c.16294C>T	p.Arg5432Trp	p.R5432W	ENST00000301067	NM_003482.3	5432	Cgg/Tgg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001417	29001417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	80	256	0	ENST00000282397.4:c.1315C>A	p.Pro439Thr	p.P439T	ENST00000282397	NM_002019.4	439	Cca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	654	506	1	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	627	502	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032487	12032487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	239	265	0	ENST00000353533.5:c.923C>T	p.Pro308Leu	p.P308L	ENST00000353533	NM_003010.3	308	cCa/cTa																																																																														
YES1	7525	MSKCC	GRCh37	18	743332	743332	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	536	442	0	ENST00000314574.4:c.808T>A	p.Trp270Arg	p.W270R	ENST00000314574	NM_005433.3	270	Tgg/Agg																																																																														
BTK	695	MSKCC	GRCh37	X	100611065	100611065	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	150	276	1	ENST00000308731.7:c.1541C>A	p.Ser514Ter	p.S514*	ENST00000308731	NM_000061.2	514	tCa/tAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123181269	123181269	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	396	267	0	ENST00000218089.9:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000218089	NM_001042749.1	245	Caa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	245	139	0	ENST00000304494.5:c.151delG	p.Val51SerfsTer2	p.V51Sfs*2	ENST00000304494	NM_000077.4	51	Gtc/tc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971207	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	245	139	0	ENST00000304494.5:c.151delG	p.Val51SerfsTer2	p.V51Sfs*2	ENST00000304494	NM_000077.4	51	Gtc/tc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662629	117662649	+	inframe_deletion	In_Frame_Del	DEL	TTCACTTTGTCTTAGAGGAGT	TTCACTTTGTCTTAGAGGAGT	-			P-0009468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	63	425	0	ENST00000368508.3:c.4816_4836del	p.Thr1606_Glu1612del	p.T1606_E1612del	ENST00000368508	NM_002944.2	1606	ACTCCTCTAAGACAAAGTGAA/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	470	266	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579475	7579475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	128	218	0	ENST00000269305.4:c.212C>T	p.Pro71Leu	p.P71L	ENST00000269305	NM_001126112.2	71	cCc/cTc																																																																														
ALK	238	MSKCC	GRCh37	2	29474022	29474022	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	166	311	0	ENST00000389048.3:c.2153G>C	p.Gly718Ala	p.G718A	ENST00000389048	NM_004304.4	718	gGc/gCc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120831	115120831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	144	209	1	ENST00000257566.3:c.175G>A	p.Ala59Thr	p.A59T	ENST00000257566	NM_016569.3	59	Gcc/Acc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030574	47030574	+	intron_variant	Intron	SNP	G	G	A			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	94	263	0	ENST00000329236.7:c.201+1677G>A		p.*67*	ENST00000329236	NM_001204466.1																																																																																
GATA1	2623	MSKCC	GRCh37	X	48652238	48652239	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	136	420	0	ENST00000376670.3:c.909_910insT	p.Thr304TyrfsTer40	p.T304Yfs*40	ENST00000376670	NM_002049.3	303	-/T																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230388	46230388	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	205	298	0	ENST00000334344.6:c.723del	p.Asp242MetfsTer50	p.D242Mfs*50	ENST00000334344	NM_152641.2	241	gTt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579469	7579470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0009476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	100	219	0	ENST00000269305.4:c.216_217dup	p.Val73AlafsTer51	p.V73Afs*51	ENST00000269305	NM_001126112.2	73	gtg/gCGtg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	35	211	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	18	417	0	ENST00000349496.5:c.109T>C	p.Ser37Pro	p.S37P	ENST00000349496	NM_001904.3	37	Tct/Cct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	27	129	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0009510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	61	496	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469144	25469144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	246	565	5	ENST00000264709.3:c.1314del	p.Asp438GlufsTer213	p.D438Efs*213	ENST00000264709	NM_175629.2	438	gaC/ga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	480	400	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	235	373	0				ENST00000310581	NM_198253.2																																																																																
MDM4	4194	MSKCC	GRCh37	1	204518532	204518532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	551	336	0	ENST00000367182.3:c.1195C>T	p.His399Tyr	p.H399Y	ENST00000367182	NM_001278516.1	399	Cac/Tac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259231	89259231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	404	357	0	ENST00000336596.2:c.375G>A	p.Met125Ile	p.M125I	ENST00000336596	NM_005233.5	125	atG/atA																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874641	35874641	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	660	610	0	ENST00000303115.3:c.797A>T	p.Lys266Ile	p.K266I	ENST00000303115	NM_002185.3	266	aAa/aTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724370	117724370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	519	459	1	ENST00000368508.3:c.509G>T	p.Trp170Leu	p.W170L	ENST00000368508	NM_002944.2	170	tGg/tTg																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205220	61205220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	454	473	2	ENST00000301761.2:c.160C>T	p.Pro54Ser	p.P54S	ENST00000301761	NM_017841.2	54	Cca/Tca																																																																														
POLE	5426	MSKCC	GRCh37	12	133212489	133212489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	256	526	0	ENST00000320574.5:c.5800C>T	p.His1934Tyr	p.H1934Y	ENST00000320574	NM_006231.2	1934	Cac/Tac																																																																														
MGA	23269	MSKCC	GRCh37	15	42003234	42003234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1294	887	804	2	ENST00000219905.7:c.2771C>A	p.Ser924Ter	p.S924*	ENST00000219905	NM_001164273.1	924	tCa/tAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81973616	81973616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1205	812	725	0	ENST00000359376.3:c.3433C>T	p.Pro1145Ser	p.P1145S	ENST00000359376	NM_002661.3	1145	Ccc/Tcc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980462	7980462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	478	456	2	ENST00000319144.4:c.1121C>T	p.Ser374Phe	p.S374F	ENST00000319144	NM_001139.2	374	tCt/tTt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231792	36231792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	547	535	1	ENST00000300305.3:c.592G>A	p.Asp198Asn	p.D198N	ENST00000300305		198	Gat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211110	55211111	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	650	505	0	ENST00000275493.2:c.353_354delinsTT	p.Ala118Val	p.A118V	ENST00000275493	NM_005228.3	118	gCC/gTT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097628	11097629	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	450	596	0	ENST00000344626.4:c.808_809delinsTT	p.Pro270Phe	p.P270F	ENST00000344626	NM_003072.3	270	CCc/TTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	69	127	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	560	366	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878538	151878538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	582	328	0	ENST00000262189.6:c.6407G>A	p.Gly2136Glu	p.G2136E	ENST00000262189	NM_170606.2	2136	gGa/gAa																																																																														
ABL1	25	MSKCC	GRCh37	9	133759841	133759841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	149	302	0	ENST00000318560.5:c.2164G>A	p.Val722Ile	p.V722I	ENST00000318560	NM_005157.4	722	Gtt/Att																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858202	9858202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	180	517	0	ENST00000330684.3:c.3199C>T	p.Arg1067Trp	p.R1067W	ENST00000330684	NM_001134407.1	1067	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	360	242	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024497	16024497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	494	496	0	ENST00000268712.3:c.1721C>T	p.Thr574Ile	p.T574I	ENST00000268712	NM_006311.3	574	aCt/aTt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302860	15302860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	195	281	0	ENST00000263388.2:c.590C>T	p.Pro197Leu	p.P197L	ENST00000263388	NM_000435.2	197	cCc/cTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217305	123217305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	401	231	0	ENST00000218089.9:c.2959C>T	p.Pro987Ser	p.P987S	ENST00000218089	NM_001042749.1	987	Ccg/Tcg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0009540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	163	397	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	76	137	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0009540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	241	441	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0009563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	89	260	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	540	574	3	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5286147	5286147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202019323		P-0009563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	193	495	1	ENST00000357368.4:c.5C>T	p.Ala2Val	p.A2V	ENST00000357368	NM_002850.3	2	gCg/gTg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29095918	29095918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	285	608	0	ENST00000328354.6:c.916G>A	p.Gly306Arg	p.G306R	ENST00000328354	NM_007194.3	306	Ggg/Agg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	138	161	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	138	161	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	138	161	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343531	343531	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	298	809	1	ENST00000262320.3:c.2143G>T	p.Glu715Ter	p.E715*	ENST00000262320	NM_003502.3	715	Gag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256236	41256236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	246	657	0	ENST00000357654.3:c.344C>T	p.Pro115Leu	p.P115L	ENST00000357654	NM_007294.3	115	cCt/cTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	86	122	0	ENST00000304494.5:c.235dup	p.Thr79AsnfsTer41	p.T79Nfs*41	ENST00000304494	NM_000077.4	79	acc/aAcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	86	122	0	ENST00000304494.5:c.235dup	p.Thr79AsnfsTer41	p.T79Nfs*41	ENST00000304494	NM_000077.4	79	acc/aAcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	86	122	0	ENST00000304494.5:c.235dup	p.Thr79AsnfsTer41	p.T79Nfs*41	ENST00000304494	NM_000077.4	79	acc/aAcc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858982	57858982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	442	725	0	ENST00000228682.2:c.478G>T	p.Ala160Ser	p.A160S	ENST00000228682	NM_005269.2	160	Gcc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009605-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	79	92	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	533262	533462	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCCGGGAGACTTACAGCGCGAGGGGCCGCTGGGTCACATGGGTCCCGGGGGGTCCCAGAGGGTCCCGGAGCTGGAGCTAGAGCCAGAGCGGCTGCCCTGTGTCAAGGGAGAGGGTCAGTGAGTGCTGCTCCCTGGCTGGGGCGGGGCGGGGCGGGTCCCTGGCTAGCTGTGGGGTGGAGAGCTGCCTCACCTGCCGGGTC	TCCCGGGAGACTTACAGCGCGAGGGGCCGCTGGGTCACATGGGTCCCGGGGGGTCCCAGAGGGTCCCGGAGCTGGAGCTAGAGCCAGAGCGGCTGCCCTGTGTCAAGGGAGAGGGTCAGTGAGTGCTGCTCCCTGGCTGGGGCGGGGCGGGGCGGGTCCCTGGCTAGCTGTGGGGTGGAGAGCTGCCTCACCTGCCGGGTC	-			P-0009605-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	162	227	0	ENST00000311189.7:c.441_450+191del		p.X147_splice	ENST00000311189		147																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057947	27057948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009605-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	260	324	0	ENST00000324856.7:c.1656dupA	p.Gln553ThrfsTer70	p.Q553Tfs*70	ENST00000324856	NM_006015.4	552	tca/tcAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	25	292	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	90	838	1	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30322731	30322731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	68	685	0	ENST00000322652.5:c.1744G>C	p.Asp582His	p.D582H	ENST00000322652	NM_015355.2	582	Gat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	224	337	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	303	264	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593525	48593525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	180	274	0	ENST00000342988.3:c.1276G>T	p.Val426Phe	p.V426F	ENST00000342988	NM_005359.5	426	Gtt/Ttt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912582	32912583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1263	659	653	0	ENST00000380152.3:c.4091dup	p.Cys1365MetfsTer3	p.C1365Mfs*3	ENST00000380152		1364	ata/aTta																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685257	89685269	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GTTTTGTTTTAAG	GTTTTGTTTTAAG	-			P-0009647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	155	185	0	ENST00000371953.3:c.165-8_169delGTTTTAAGGTTTT		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	534	319	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	94	212	0				ENST00000310581	NM_198253.2																																																																																
EPHA5	2044	MSKCC	GRCh37	4	66356152	66356152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	72	350	0	ENST00000273854.3:c.1345G>C	p.Asp449His	p.D449H	ENST00000273854	NM_004439.5	449	Gac/Cac																																																																														
KDM5A	5927	MSKCC	GRCh37	12	406210	406210	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	51	367	0	ENST00000399788.2:c.4231C>T	p.Gln1411Ter	p.Q1411*	ENST00000399788	NM_001042603.1	1411	Caa/Taa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346339	73346339	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	90	378	0	ENST00000377767.4:c.1461C>G	p.Asp487Glu	p.D487E	ENST00000377767	NM_014953.3	487	gaC/gaG																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39570469	39570469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	63	462	1	ENST00000262039.4:c.665G>T	p.Arg222Leu	p.R222L	ENST00000262039	NM_002647.2	222	cGa/cTa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933893	39933893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	110	563	0	ENST00000378444.4:c.706C>A	p.Pro236Thr	p.P236T	ENST00000378444	NM_001123385.1	236	Cca/Aca																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006816	47006816	+	5_prime_UTR_variant	5'UTR	DEL	G	G	-			P-0009737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	213	433	0	ENST00000329236.7:c.-63delG		p.*21*	ENST00000329236	NM_001204466.1																																																																																
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	126	349	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	266	628	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	176	472	1	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189586386	189586386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	99	258	2	ENST00000264731.3:c.1010G>A	p.Arg337Gln	p.R337Q	ENST00000264731	NM_003722.4	337	cGa/cAa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314906	1314906	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	222	665	0				ENST00000381566																																																																																	
NOTCH4	4855	MSKCC	GRCh37	6	32187419	32187419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	206	576	0	ENST00000375023.3:c.1460G>A	p.Gly487Glu	p.G487E	ENST00000375023	NM_004557.3	487	gGa/gAa																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166104	118166104	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	237	582	0	ENST00000369448.3:c.614A>C	p.His205Pro	p.H205P	ENST00000369448	NM_017709.3	205	cAc/cCc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610700	52610700	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	191	508	0	ENST00000394830.3:c.3473G>A	p.Trp1158Ter	p.W1158*	ENST00000394830	NM_018313.4	1158	tGg/tAg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873054	134873054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	202	557	1	ENST00000398015.3:c.1358C>T	p.Ser453Leu	p.S453L	ENST00000398015	NM_004441.4	453	tCa/tTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168988	32168988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1078	319	867	3	ENST00000375023.3:c.4045G>A	p.Glu1349Lys	p.E1349K	ENST00000375023	NM_004557.3	1349	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518406	8518406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	60	208	0	ENST00000356435.5:c.985C>T	p.Pro329Ser	p.P329S	ENST00000356435		329	Cct/Tct																																																																														
MGA	23269	MSKCC	GRCh37	15	41961379	41961379	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1371	360	1194	1	ENST00000219905.7:c.287T>A	p.Ile96Asn	p.I96N	ENST00000219905	NM_001164273.1	96	aTt/aAt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15943778	15943778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	220	588	0	ENST00000268712.3:c.6710A>T	p.Asn2237Ile	p.N2237I	ENST00000268712	NM_006311.3	2237	aAt/aTt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56402553	56402553	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	171	507	1	ENST00000348428.3:c.1595T>C	p.Val532Ala	p.V532A	ENST00000348428	NM_006785.3	532	gTt/gCt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5229512	5229512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	37	121	0	ENST00000357368.4:c.2339C>T	p.Ala780Val	p.A780V	ENST00000357368	NM_002850.3	780	gCc/gTc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31389138	31389138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	227	599	0	ENST00000328111.2:c.2051C>T	p.Pro684Leu	p.P684L	ENST00000328111	NM_006892.3	684	cCc/cTc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090825	5090827	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	180	646	1	ENST00000381652.3:c.2973_2975del	p.Lys991_Ile992delinsAsn	p.K991_I992delinsN	ENST00000381652	NM_004972.3	991	aaAATt/aat																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350488	15350489	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	156	273	0	ENST00000263377.2:c.3426_3427delinsTT	p.Pro1143Ser	p.P1143S	ENST00000263377	NM_058243.2	1142	gcCCcc/gcTTcc																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165922	118165923	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	154	435	0	ENST00000369448.3:c.432_433delinsAA	p.Val145Ile	p.V145I	ENST00000369448	NM_017709.3	144	aaGGtt/aaAAtt																																																																														
TET2	54790	MSKCC	GRCh37	4	106196463	106196463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	99	629	0	ENST00000380013.4:c.4796C>T	p.Ser1599Phe	p.S1599F	ENST00000380013	NM_001127208.2	1599	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246137	46246137	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	57	421	0	ENST00000334344.6:c.4231C>T	p.Gln1411Ter	p.Q1411*	ENST00000334344	NM_152641.2	1411	Caa/Taa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892266	9892266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	58	426	0	ENST00000330684.3:c.2224G>A	p.Asp742Asn	p.D742N	ENST00000330684	NM_001134407.1	742	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	69	256	1				ENST00000310581	NM_198253.2																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149515250	149515250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	59	570	0	ENST00000261799.4:c.232G>A	p.Asp78Asn	p.D78N	ENST00000261799	NM_002609.3	78	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518111	8518111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	59	393	1	ENST00000356435.5:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000356435		427	cGa/cAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81904539	81904539	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201294738		P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1277	85	605	1	ENST00000359376.3:c.647C>T	p.Ser216Leu	p.S216L	ENST00000359376	NM_002661.3	216	tCg/tTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123298225	123298225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	42	305	0	ENST00000358487.5:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000358487	NM_000141.4	210	cGa/cAa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120480488	120480488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	56	429	2	ENST00000256646.2:c.3329C>T	p.Ser1110Phe	p.S1110F	ENST00000256646	NM_024408.3	1110	tCc/tTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497215	149497215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	44	370	0	ENST00000261799.4:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000261799	NM_002609.3	1035	Gag/Aag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677858	117677858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	53	404	0	ENST00000368508.3:c.4075G>A	p.Glu1359Lys	p.E1359K	ENST00000368508	NM_002944.2	1359	Gag/Aag																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80537213	80537213	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	34	203	0	ENST00000286548.4:c.185T>A	p.Ile62Asn	p.I62N	ENST00000286548	NM_002072.3	62	aTc/aAc																																																																														
SYK	6850	MSKCC	GRCh37	9	93606289	93606289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	70	570	0	ENST00000375746.1:c.109G>A	p.Gly37Arg	p.G37R	ENST00000375746	NM_001174167.1	37	Ggg/Agg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274803	123274803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	68	435	1	ENST00000358487.5:c.1115C>T	p.Ser372Phe	p.S372F	ENST00000358487	NM_000141.4	372	tCc/tTc																																																																														
WT1	7490	MSKCC	GRCh37	11	32410666	32410666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	114	628	0	ENST00000332351.3:c.1492G>A	p.Glu498Lys	p.E498K	ENST00000332351	NM_024426.4	498	Gaa/Aaa																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025621	1025621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	48	532	0	ENST00000358495.3:c.754G>A	p.Glu252Lys	p.E252K	ENST00000358495	NM_134424.2	252	Gag/Aag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491450	18491450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	63	443	0	ENST00000266497.5:c.1363G>A	p.Glu455Lys	p.E455K	ENST00000266497		455	Gaa/Aaa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134015	41134015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1685	117	1023	0	ENST00000379561.5:c.1613C>T	p.Pro538Leu	p.P538L	ENST00000379561	NM_002015.3	538	cCc/cTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004636	16004636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	97	565	0	ENST00000268712.3:c.2618C>T	p.Pro873Leu	p.P873L	ENST00000268712	NM_006311.3	873	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1184	75	546	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39584423	39584423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	83	526	0	ENST00000262039.4:c.1088C>T	p.Ser363Phe	p.S363F	ENST00000262039	NM_002647.2	363	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743942	40743942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	45	337	0	ENST00000373198.4:c.3053G>A	p.Arg1018Gln	p.R1018Q	ENST00000373198	NM_133170.3	1018	cGa/cAa																																																																														
AR	367	MSKCC	GRCh37	X	66863144	66863144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	112	419	0	ENST00000374690.3:c.1663C>T	p.Pro555Ser	p.P555S	ENST00000374690	NM_000044.3	555	Cca/Tca																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429355	78429356	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1198	85	542	1	ENST00000370768.2:c.1085_1086dup	p.Arg363ValfsTer29	p.R363Vfs*29	ENST00000370768	NM_003902.3	362	-/GT																																																																														
JAK1	3716	MSKCC	GRCh37	1	65344727	65344728	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	52	395	0	ENST00000342505.4:c.309_310delinsGT	p.Arg104Trp	p.R104W	ENST00000342505	NM_002227.2	103	ctCCgg/ctGTgg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888303	112888304	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	45	353	0	ENST00000351677.2:c.319_320delinsTT	p.Pro107Phe	p.P107F	ENST00000351677	NM_002834.3	107	CCt/TTt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11273601	11273601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	64	207	0	ENST00000361445.4:c.3140C>T	p.Ser1047Leu	p.S1047L	ENST00000361445	NM_004958.3	1047	tCa/tTa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298094	11298094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	64	211	0	ENST00000361445.4:c.2014C>T	p.Arg672Cys	p.R672C	ENST00000361445	NM_004958.3	672	Cgc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259967	16259967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	158	474	0	ENST00000375759.3:c.7232C>T	p.Ser2411Leu	p.S2411L	ENST00000375759	NM_015001.2	2411	tCg/tTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262078	16262078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	32	118	0	ENST00000375759.3:c.9343G>A	p.Glu3115Lys	p.E3115K	ENST00000375759	NM_015001.2	3115	Gaa/Aaa																																																																														
SDHB	6390	MSKCC	GRCh37	1	17350563	17350563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	63	295	1	ENST00000375499.3:c.547C>T	p.Leu183Phe	p.L183F	ENST00000375499	NM_003000.2	183	Ctc/Ttc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932851	36932851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1349	160	569	0	ENST00000361632.4:c.2020G>A	p.Val674Met	p.V674M	ENST00000361632		674	Gtg/Atg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78433860	78433860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	84	422	0	ENST00000370768.2:c.239C>T	p.Pro80Leu	p.P80L	ENST00000370768	NM_003902.3	80	cCt/cTt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115252203	115252203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	121	405	0	ENST00000369535.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000369535	NM_002524.4	146	gCc/gTc																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695728	117695728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	86	326	0	ENST00000369458.3:c.709G>A	p.Asp237Asn	p.D237N	ENST00000369458	NM_024626.3	237	Gat/Aat																																																																														
INSRR	3645	MSKCC	GRCh37	1	156812021	156812021	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	25	148	0	ENST00000368195.3:c.3280C>T	p.Gln1094Ter	p.Q1094*	ENST00000368195	NM_014215.2	1094	Caa/Taa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838333	156838333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148324672		P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	101	440	0	ENST00000524377.1:c.611C>T	p.Ser204Leu	p.S204L	ENST00000524377	NM_002529.3	204	tCg/tTg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846306	156846306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	199	471	1	ENST00000524377.1:c.1747C>T	p.Arg583Cys	p.R583C	ENST00000524377	NM_002529.3	583	Cgc/Tgc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851429	156851429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	34	265	0	ENST00000524377.1:c.2386G>A	p.Gly796Ser	p.G796S	ENST00000524377	NM_002529.3	796	Ggc/Agc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965154	25965154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	90	325	0	ENST00000435504.4:c.4052C>T	p.Ser1351Phe	p.S1351F	ENST00000435504		1351	tCt/tTt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966913	25966913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	114	479	0	ENST00000435504.4:c.2293C>T	p.Pro765Ser	p.P765S	ENST00000435504		765	Cct/Tct																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25991701	25991701	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	109	347	0	ENST00000435504.4:c.541C>T	p.Gln181Ter	p.Q181*	ENST00000435504		181	Caa/Taa																																																																														
ALK	238	MSKCC	GRCh37	2	29455223	29455223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	133	486	0	ENST00000389048.3:c.2579G>A	p.Arg860Lys	p.R860K	ENST00000389048	NM_004304.4	860	aGa/aAa																																																																														
ALK	238	MSKCC	GRCh37	2	29473989	29473989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	106	460	0	ENST00000389048.3:c.2186C>T	p.Pro729Leu	p.P729L	ENST00000389048	NM_004304.4	729	cCa/cTa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639666	47639666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	74	322	0	ENST00000233146.2:c.759G>A	p.Met253Ile	p.M253I	ENST00000233146	NM_000251.2	253	atG/atA																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622475	158622475	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1438	199	613	1	ENST00000263640.3:c.1024A>T	p.Ile342Phe	p.I342F	ENST00000263640	NM_001105.4	342	Att/Ttt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096626	178096626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	66	270	0	ENST00000397062.3:c.705G>A	p.Met235Ile	p.M235I	ENST00000397062	NM_006164.4	235	atG/atA																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113095	209113095	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	71	289	0	ENST00000345146.2:c.412C>T	p.Gln138Ter	p.Q138*	ENST00000345146	NM_005896.2	138	Caa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248420	212248420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	91	351	0	ENST00000342788.4:c.3847G>A	p.Glu1283Lys	p.E1283K	ENST00000342788	NM_005235.2	1283	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537975	212537975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	114	307	0	ENST00000342788.4:c.1630C>T	p.Arg544Trp	p.R544W	ENST00000342788	NM_005235.2	544	Cgg/Tgg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566827	212566827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	144	345	0	ENST00000342788.4:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000342788	NM_005235.2	452	Gaa/Aaa																																																																														
BARD1	580	MSKCC	GRCh37	2	215632279	215632279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	126	442	0	ENST00000260947.4:c.1495C>T	p.His499Tyr	p.H499Y	ENST00000260947	NM_000465.2	499	Cac/Tac																																																																														
INHA	3623	MSKCC	GRCh37	2	220439812	220439812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	141	648	1	ENST00000243786.2:c.665G>A	p.Arg222Lys	p.R222K	ENST00000243786	NM_002191.3	222	aGa/aAa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067242	37067242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	166	405	0	ENST00000231790.2:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000231790	NM_000249.3	385	Cgt/Tgt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936406	49936406	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1572	279	660	0	ENST00000296474.3:c.1442A>G	p.Asn481Ser	p.N481S	ENST00000296474	NM_002447.2	481	aAc/aGc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52613080	52613080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	104	273	0	ENST00000394830.3:c.3448C>T	p.Arg1150Cys	p.R1150C	ENST00000394830	NM_018313.4	1150	Cgt/Tgt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52677351	52677351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	43	265	0	ENST00000394830.3:c.908C>T	p.Ser303Phe	p.S303F	ENST00000394830	NM_018313.4	303	tCc/tTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259197	89259197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	110	304	0	ENST00000336596.2:c.341G>A	p.Gly114Glu	p.G114E	ENST00000336596	NM_005233.5	114	gGa/gAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259244	89259244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	110	312	0	ENST00000336596.2:c.388G>A	p.Asp130Asn	p.D130N	ENST00000336596	NM_005233.5	130	Gat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	116	325	0	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259388	89259388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1392	142	516	0	ENST00000336596.2:c.532G>A	p.Gly178Arg	p.G178R	ENST00000336596	NM_005233.5	178	Gga/Aga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259629	89259629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	48	142	0	ENST00000336596.2:c.773C>T	p.Ser258Phe	p.S258F	ENST00000336596	NM_005233.5	258	tCc/tTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390157	89390157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	95	391	0	ENST00000336596.2:c.906G>A	p.Met302Ile	p.M302I	ENST00000336596	NM_005233.5	302	atG/atA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445067	89445067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	142	354	0	ENST00000336596.2:c.1387C>T	p.Pro463Ser	p.P463S	ENST00000336596	NM_005233.5	463	Cct/Tct																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499372	89499372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	157	327	0	ENST00000336596.2:c.2542G>A	p.Asp848Asn	p.D848N	ENST00000336596	NM_005233.5	848	Gac/Aac																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119642331	119642331	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	52	192	0	ENST00000316626.5:c.367-1G>A		p.X123_splice	ENST00000316626		123																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670531	134670531	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	111	401	0	ENST00000398015.3:c.442C>T	p.Gln148Ter	p.Q148*	ENST00000398015	NM_004441.4	148	Cag/Tag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134885807	134885807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	89	317	0	ENST00000398015.3:c.1718C>T	p.Ala573Val	p.A573V	ENST00000398015	NM_004441.4	573	gCt/gTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968274	134968275	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	83	454	0	ENST00000398015.3:c.2787_2788delinsAA	p.Asp930Asn	p.D930N	ENST00000398015	NM_004441.4	929	agGGac/agAAac																																																																														
ATR	545	MSKCC	GRCh37	3	142176561	142176561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	72	436	1	ENST00000350721.4:c.7540C>T	p.Arg2514Cys	p.R2514C	ENST00000350721	NM_001184.3	2514	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916653	178916653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	121	599	0	ENST00000263967.3:c.40C>T	p.His14Tyr	p.H14Y	ENST00000263967	NM_006218.2	14	Cac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921495	178921496	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	81	335	0	ENST00000263967.3:c.977_978delinsTT	p.Ser326Phe	p.S326F	ENST00000263967	NM_006218.2	326	tCC/tTT																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190956	185190956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1724	211	725	0	ENST00000265026.3:c.1837G>A	p.Glu613Lys	p.E613K	ENST00000265026	NM_004721.4	613	Gaa/Aaa																																																																														
BCL6	604	MSKCC	GRCh37	3	187446273	187446273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	71	260	0	ENST00000232014.4:c.1415C>T	p.Pro472Leu	p.P472L	ENST00000232014	NM_001130845.1	472	cCc/cTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189587161	189587161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	75	353	0	ENST00000264731.3:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000264731	NM_003722.4	393	cGa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189604245	189604245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	143	416	0	ENST00000264731.3:c.1412G>A	p.Ser471Asn	p.S471N	ENST00000264731	NM_003722.4	471	aGc/aAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803732	1803732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	105	376	0	ENST00000260795.2:c.910C>T	p.Pro304Ser	p.P304S	ENST00000260795		304	Ccc/Tcc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127262	55127262	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	66	233	0	ENST00000257290.5:c.50G>A	p.Gly17Glu	p.G17E	ENST00000257290	NM_006206.4	17	gGg/gAg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55130014	55130014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	109	430	2	ENST00000257290.5:c.548C>T	p.Thr183Ile	p.T183I	ENST00000257290	NM_006206.4	183	aCt/aTt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138563	55138563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	83	276	0	ENST00000257290.5:c.1240C>T	p.Pro414Ser	p.P414S	ENST00000257290	NM_006206.4	414	Cct/Tct																																																																														
KIT	3815	MSKCC	GRCh37	4	55564552	55564552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	105	360	0	ENST00000288135.5:c.440C>T	p.Ser147Phe	p.S147F	ENST00000288135	NM_000222.2	147	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955863	55955863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868047715		P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	92	389	0	ENST00000263923.4:c.3299C>T	p.Ser1100Phe	p.S1100F	ENST00000263923	NM_002253.2	1100	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55956127	55956127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	92	421	1	ENST00000263923.4:c.3188G>A	p.Gly1063Glu	p.G1063E	ENST00000263923	NM_002253.2	1063	gGa/gAa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007403	143007403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	71	254	0	ENST00000262992.4:c.2381C>T	p.Ser794Leu	p.S794L	ENST00000262992	NM_001101669.1	794	tCa/tTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557368	187557368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	77	244	2	ENST00000441802.2:c.3994C>T	p.Arg1332Cys	p.R1332C	ENST00000441802	NM_005245.3	1332	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1268645	1268645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	164	444	2	ENST00000310581.5:c.2572C>T	p.Arg858Trp	p.R858W	ENST00000310581	NM_198253.2	858	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295204	1295204	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs2735943		P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	18	156	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	65	203	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295334	1295334	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	34	306	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35867411	35867412	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	36	233	0	ENST00000303115.3:c.225_226delinsAA	p.Ala76Thr	p.A76T	ENST00000303115	NM_002185.3	75	ggGGcc/ggAAcc																																																																														
APC	324	MSKCC	GRCh37	5	112154777	112154777	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	154	324	0	ENST00000257430.4:c.1048T>A	p.Ser350Thr	p.S350T	ENST00000257430	NM_000038.5	350	Tct/Act																																																																														
APC	324	MSKCC	GRCh37	5	112154847	112154847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	91	363	1	ENST00000257430.4:c.1118C>T	p.Ser373Phe	p.S373F	ENST00000257430	NM_000038.5	373	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112179365	112179365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	235	404	0	ENST00000257430.4:c.8074C>T	p.Pro2692Ser	p.P2692S	ENST00000257430	NM_000038.5	2692	Cca/Tca																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149452904	149452904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1250	150	577	0	ENST00000286301.3:c.1042G>A	p.Glu348Lys	p.E348K	ENST00000286301	NM_005211.3	348	Gag/Aag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520680	176520680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	92	406	0	ENST00000292408.4:c.1423G>A	p.Glu475Lys	p.E475K	ENST00000292408	NM_213647.1	475	Gag/Aag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056973	180056973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1113	142	530	0	ENST00000261937.6:c.646C>T	p.Leu216Phe	p.L216F	ENST00000261937	NM_182925.4	216	Ctt/Ttt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057702	180057702	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202063909		P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	135	462	1	ENST00000261937.6:c.253G>A	p.Glu85Lys	p.E85K	ENST00000261937	NM_182925.4	85	Gag/Aag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170141	32170141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	95	358	0	ENST00000375023.3:c.3467G>A	p.Gly1156Asp	p.G1156D	ENST00000375023	NM_004557.3	1156	gGc/gAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170292	32170293	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	137	265	0	ENST00000375023.3:c.3315_3316delinsTT	p.Pro1106Ser	p.P1106S	ENST00000375023	NM_004557.3	1105	tcCCct/tcTTct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170328	32170328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	109	316	0	ENST00000375023.3:c.3280C>T	p.His1094Tyr	p.H1094Y	ENST00000375023	NM_004557.3	1094	Cat/Tat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181950	32181950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1275	109	435	0	ENST00000375023.3:c.2104C>T	p.His702Tyr	p.H702Y	ENST00000375023	NM_004557.3	702	Cat/Tat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188244	32188244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	132	437	0	ENST00000375023.3:c.1097C>T	p.Pro366Leu	p.P366L	ENST00000375023	NM_004557.3	366	cCg/cTg																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43742121	43742121	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1705	174	684	0	ENST00000523873.1:c.110A>G	p.His37Arg	p.H37R	ENST00000523873		37	cAt/cGt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955046	93955046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	156	476	0	ENST00000369303.4:c.2852C>T	p.Ser951Phe	p.S951F	ENST00000369303	NM_004440.3	951	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955074	93955074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	115	564	0	ENST00000369303.4:c.2824G>A	p.Asp942Asn	p.D942N	ENST00000369303	NM_004440.3	942	Gat/Aat																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965756	93965756	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	149	469	0	ENST00000369303.4:c.2173-1G>A		p.X725_splice	ENST00000369303	NM_004440.3	725																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93967228	93967228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	94	420	0	ENST00000369303.4:c.2124G>A	p.Met708Ile	p.M708I	ENST00000369303	NM_004440.3	708	atG/atA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068105	94068105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1373	281	616	0	ENST00000369303.4:c.857C>T	p.Ser286Phe	p.S286F	ENST00000369303	NM_004440.3	286	tCt/tTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117680982	117680982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	99	255	0	ENST00000368508.3:c.3638C>T	p.Ser1213Phe	p.S1213F	ENST00000368508	NM_002944.2	1213	tCt/tTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681547	117681547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151330473		P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	113	451	0	ENST00000368508.3:c.3403G>A	p.Gly1135Arg	p.G1135R	ENST00000368508	NM_002944.2	1135	Ggg/Agg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686895	117686895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	132	355	0	ENST00000368508.3:c.2822C>T	p.Ser941Phe	p.S941F	ENST00000368508	NM_002944.2	941	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687290	117687290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	120	442	0	ENST00000368508.3:c.2761G>A	p.Ala921Thr	p.A921T	ENST00000368508	NM_002944.2	921	Gcc/Acc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117714396	117714396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	169	378	0	ENST00000368508.3:c.1253C>T	p.Ser418Leu	p.S418L	ENST00000368508	NM_002944.2	418	tCa/tTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724328	117724328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	174	384	0	ENST00000368508.3:c.551C>T	p.Pro184Leu	p.P184L	ENST00000368508	NM_002944.2	184	cCc/cTc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196933	138196933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	80	298	0	ENST00000237289.4:c.595C>T	p.Leu199Phe	p.L199F	ENST00000237289	NM_001270507.1	199	Ctt/Ttt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201873	152201873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	78	291	0	ENST00000206249.3:c.727C>T	p.Arg243Cys	p.R243C	ENST00000206249	NM_000125.3	243	Cgt/Tgt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265635	152265635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	34	136	0	ENST00000206249.3:c.1088G>A	p.Arg363Lys	p.R363K	ENST00000206249	NM_000125.3	363	aGg/aAg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152415558	152415558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1162	260	495	0	ENST00000206249.3:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000206249	NM_000125.3	470	Gaa/Aaa																																																																														
PARK2	5071	MSKCC	GRCh37	6	162206855	162206855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	139	335	0	ENST00000366898.1:c.820G>A	p.Asp274Asn	p.D274N	ENST00000366898	NM_004562.2	274	Gat/Aat																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946316	2946316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	186	373	0	ENST00000396946.4:c.3421G>A	p.Glu1141Lys	p.E1141K	ENST00000396946	NM_032415.4	1141	Gag/Aag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962857	2962858	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	124	382	1	ENST00000396946.4:c.2050_2051delinsAA	p.Gly684Lys	p.G684K	ENST00000396946	NM_032415.4	684	GGg/AAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963866	2963866	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	211	451	0	ENST00000396946.4:c.1940+1G>A		p.X647_splice	ENST00000396946	NM_032415.4	647																																																																															
CARD11	84433	MSKCC	GRCh37	7	2968280	2968280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	113	416	1	ENST00000396946.4:c.1706G>A	p.Gly569Glu	p.G569E	ENST00000396946	NM_032415.4	569	gGa/gAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987272	2987272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	99	341	0	ENST00000396946.4:c.157G>A	p.Asp53Asn	p.D53N	ENST00000396946	NM_032415.4	53	Gat/Aat																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444401	50444401	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	68	205	0	ENST00000331340.3:c.331C>T	p.Arg111Ter	p.R111*	ENST00000331340	NM_006060.4	111	Cga/Tga																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450267	50450267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	92	327	0	ENST00000331340.3:c.451G>A	p.Gly151Arg	p.G151R	ENST00000331340	NM_006060.4	151	Ggg/Agg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450292	50450292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	199	373	0	ENST00000331340.3:c.476A>G	p.Asn159Ser	p.N159S	ENST00000331340	NM_006060.4	159	aAc/aGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210078	55210078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	258	483	0	ENST00000275493.2:c.188G>A	p.Gly63Glu	p.G63E	ENST00000275493	NM_005228.3	63	gGg/gAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211097	55211097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	197	418	0	ENST00000275493.2:c.340G>A	p.Glu114Lys	p.E114K	ENST00000275493	NM_005228.3	114	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55224495	55224495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	131	424	2	ENST00000275493.2:c.1177G>A	p.Asp393Asn	p.D393N	ENST00000275493	NM_005228.3	393	Gat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273092	55273092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	102	375	0	ENST00000275493.2:c.3415C>T	p.Leu1139Phe	p.L1139F	ENST00000275493	NM_005228.3	1139	Ctc/Ttc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508922	106508922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	53	184	0	ENST00000359195.3:c.916G>A	p.Val306Ile	p.V306I	ENST00000359195	NM_002649.2	306	Gta/Ata																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509747	106509747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	109	344	0	ENST00000359195.3:c.1741G>A	p.Glu581Lys	p.E581K	ENST00000359195	NM_002649.2	581	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526694	106526694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	181	312	0	ENST00000359195.3:c.2987G>A	p.Gly996Glu	p.G996E	ENST00000359195	NM_002649.2	996	gGa/gAa																																																																														
MET	4233	MSKCC	GRCh37	7	116380130	116380130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	91	458	0	ENST00000397752.3:c.1519G>A	p.Gly507Arg	p.G507R	ENST00000397752	NM_000245.2	507	Ggg/Agg																																																																														
SMO	6608	MSKCC	GRCh37	7	128846127	128846127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1484	187	574	1	ENST00000249373.3:c.1057C>T	p.Leu353Phe	p.L353F	ENST00000249373	NM_005631.4	353	Ctc/Ttc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845367	151845367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	53	318	1	ENST00000262189.6:c.13645C>T	p.Arg4549Cys	p.R4549C	ENST00000262189	NM_170606.2	4549	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860446	151860446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	197	468	0	ENST00000262189.6:c.10216G>A	p.Glu3406Lys	p.E3406K	ENST00000262189	NM_170606.2	3406	Gaa/Aaa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372314	55372314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	69	230	0	ENST00000297316.4:c.1004C>T	p.Pro335Leu	p.P335L	ENST00000297316	NM_022454.3	335	cCc/cTc																																																																														
TCEB1	6921	MSKCC	GRCh37	8	74859038	74859038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	23	72	0	ENST00000284811.8:c.166G>A	p.Glu56Lys	p.E56K	ENST00000284811		56	Gaa/Aaa																																																																														
CD274	29126	MSKCC	GRCh37	9	5457240	5457240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	251	285	0	ENST00000381577.3:c.214G>A	p.Glu72Lys	p.E72K	ENST00000381577	NM_014143.3	72	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8375966	8375966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	323	421	0	ENST00000356435.5:c.4631C>T	p.Pro1544Leu	p.P1544L	ENST00000356435		1544	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471007	8471007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	101	430	0	ENST00000356435.5:c.3492G>A	p.Met1164Ile	p.M1164I	ENST00000356435		1164	atG/atA																																																																														
PAX5	5079	MSKCC	GRCh37	9	37006508	37006508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	103	405	0	ENST00000358127.4:c.437C>T	p.Pro146Leu	p.P146L	ENST00000358127	NM_001280556.1	146	cCa/cTa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87549127	87549127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	318	424	1	ENST00000277120.3:c.1684G>A	p.Glu562Lys	p.E562K	ENST00000277120		562	Gaa/Aaa																																																																														
SYK	6850	MSKCC	GRCh37	9	93629443	93629443	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	105	368	0	ENST00000375746.1:c.877A>C	p.Ile293Leu	p.I293L	ENST00000375746	NM_001174167.1	293	Atc/Ctc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98242835	98242835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	301	394	0	ENST00000331920.6:c.782C>T	p.Pro261Leu	p.P261L	ENST00000331920	NM_000264.3	261	cCt/cTt																																																																														
ABL1	25	MSKCC	GRCh37	9	133755949	133755949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	291	363	0	ENST00000318560.5:c.1576C>T	p.Pro526Ser	p.P526S	ENST00000318560	NM_005157.4	526	Cca/Tca																																																																														
ABL1	25	MSKCC	GRCh37	9	133760025	133760025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	381	493	0	ENST00000318560.5:c.2348C>T	p.Pro783Leu	p.P783L	ENST00000318560	NM_005157.4	783	cCc/cTc																																																																														
RET	5979	MSKCC	GRCh37	10	43596017	43596017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	74	352	0	ENST00000355710.3:c.184G>A	p.Glu62Lys	p.E62K	ENST00000355710	NM_020975.4	62	Gag/Aag																																																																														
RET	5979	MSKCC	GRCh37	10	43604664	43604664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	81	290	0	ENST00000355710.3:c.1249C>T	p.Arg417Cys	p.R417C	ENST00000355710	NM_020975.4	417	Cgc/Tgc																																																																														
TET1	80312	MSKCC	GRCh37	10	70333410	70333410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	109	472	0	ENST00000373644.4:c.1315C>T	p.Pro439Ser	p.P439S	ENST00000373644	NM_030625.2	439	Cca/Tca																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244913	123244913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	102	452	1	ENST00000358487.5:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000358487	NM_000141.4	731	Gaa/Aaa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244982	123244982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	128	464	1	ENST00000358487.5:c.2122C>T	p.Pro708Ser	p.P708S	ENST00000358487	NM_000141.4	708	Ccc/Tcc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123276865	123276865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	119	402	0	ENST00000358487.5:c.1052C>T	p.Ser351Phe	p.S351F	ENST00000358487	NM_000141.4	351	tCc/tTc																																																																														
HRAS	3265	MSKCC	GRCh37	11	533476	533476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	143	378	0	ENST00000311189.7:c.427G>A	p.Glu143Lys	p.E143K	ENST00000311189		143	Gag/Aag																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518524	69518524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	117	174	0	ENST00000294312.3:c.121C>T	p.Pro41Ser	p.P41S	ENST00000294312	NM_005117.2	41	Ccc/Tcc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77043867	77043867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1323	310	574	0	ENST00000356341.3:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000356341	NM_002576.4	487	Cca/Tca																																																																														
PGR	5241	MSKCC	GRCh37	11	100912815	100912815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	232	492	0	ENST00000325455.5:c.2507G>A	p.Arg836Gln	p.R836Q	ENST00000325455	NM_001202474.3	836	cGa/cAa																																																																														
PGR	5241	MSKCC	GRCh37	11	100962530	100962530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1312	140	499	0	ENST00000325455.5:c.1867C>T	p.Arg623Cys	p.R623C	ENST00000325455	NM_001202474.3	623	Cgc/Tgc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195301	102195301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1573	173	675	0	ENST00000263464.3:c.61G>A	p.Glu21Lys	p.E21K	ENST00000263464	NM_001165.4	21	Gaa/Aaa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102196078	102196078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	137	525	0	ENST00000263464.3:c.838G>A	p.Gly280Ser	p.G280S	ENST00000263464	NM_001165.4	280	Ggt/Agt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343772	118343772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	109	449	0	ENST00000534358.1:c.1898C>T	p.Ser633Phe	p.S633F	ENST00000534358	NM_005933.3	633	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373238	118373238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	250	464	0	ENST00000534358.1:c.6631C>T	p.Arg2211Trp	p.R2211W	ENST00000534358	NM_005933.3	2211	Cgg/Tgg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	394804	394804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	112	322	0	ENST00000399788.2:c.4891G>A	p.Gly1631Ser	p.G1631S	ENST00000399788	NM_001042603.1	1631	Ggc/Agc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432886	432886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	56	345	0	ENST00000399788.2:c.2030C>T	p.Ser677Leu	p.S677L	ENST00000399788	NM_001042603.1	677	tCa/tTa																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022532	12022532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	102	433	1	ENST00000396373.4:c.638C>T	p.Ser213Phe	p.S213F	ENST00000396373	NM_001987.4	213	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719980	18719980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	66	310	0	ENST00000266497.5:c.3877G>A	p.Glu1293Lys	p.E1293K	ENST00000266497		1293	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431588	49431588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	84	304	0	ENST00000301067.7:c.9551C>T	p.Ser3184Phe	p.S3184F	ENST00000301067	NM_003482.3	3184	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433782	49433782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	141	468	1	ENST00000301067.7:c.7771G>A	p.Gly2591Ser	p.G2591S	ENST00000301067	NM_003482.3	2591	Ggc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438191	49438191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	316	512	0	ENST00000301067.7:c.5078G>T	p.Arg1693Leu	p.R1693L	ENST00000301067	NM_003482.3	1693	cGg/cTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858941	57858941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1395	395	744	1	ENST00000228682.2:c.437C>T	p.Ser146Leu	p.S146L	ENST00000228682	NM_005269.2	146	tCg/tTg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811603	102811603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	288	577	0	ENST00000307046.8:c.581G>A	p.Gly194Glu	p.G194E	ENST00000307046	NM_001111285.1	194	gGa/gAa																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811643	102811643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	334	614	0	ENST00000307046.8:c.541G>A	p.Glu181Lys	p.E181K	ENST00000307046	NM_001111285.1	181	Gag/Aag																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111855975	111855975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	234	475	0	ENST00000341259.2:c.26C>T	p.Ser9Phe	p.S9F	ENST00000341259	NM_005475.2	9	tCc/tTc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856031	111856031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	113	414	0	ENST00000341259.2:c.82G>A	p.Glu28Lys	p.E28K	ENST00000341259	NM_005475.2	28	Gag/Aag																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856444	111856445	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	59	179	0	ENST00000341259.2:c.495_496delinsTT	p.Pro166Ser	p.P166S	ENST00000341259	NM_005475.2	165	acCCcc/acTTcc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117387	115117387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	84	454	0	ENST00000257566.3:c.787C>T	p.Leu263Phe	p.L263F	ENST00000257566	NM_016569.3	263	Ctc/Ttc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120753	115120753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	196	425	0	ENST00000257566.3:c.253G>A	p.Ala85Thr	p.A85T	ENST00000257566	NM_016569.3	85	Gcg/Acg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120761	115120762	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	168	398	0	ENST00000257566.3:c.244_245delinsAA	p.Gly82Lys	p.G82K	ENST00000257566	NM_016569.3	82	GGg/AAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133233952	133233952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	104	349	0	ENST00000320574.5:c.3442C>T	p.Pro1148Ser	p.P1148S	ENST00000320574	NM_006231.2	1148	Cct/Tct																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895622	28895622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	101	482	0	ENST00000282397.4:c.3152C>T	p.Pro1051Leu	p.P1051L	ENST00000282397	NM_002019.4	1051	cCc/cTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001416	29001416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	68	244	0	ENST00000282397.4:c.1316C>T	p.Pro439Leu	p.P439L	ENST00000282397	NM_002019.4	439	cCa/cTa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005401	29005401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	74	350	0	ENST00000282397.4:c.860C>T	p.Ser287Phe	p.S287F	ENST00000282397	NM_002019.4	287	tCc/tTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041237	29041237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	113	344	0	ENST00000282397.4:c.191C>T	p.Pro64Leu	p.P64L	ENST00000282397	NM_002019.4	64	cCt/cTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041243	29041243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	217	313	0	ENST00000282397.4:c.185C>T	p.Ser62Phe	p.S62F	ENST00000282397	NM_002019.4	62	tCt/tTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041725	29041725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	198	344	0	ENST00000282397.4:c.94C>T	p.Pro32Ser	p.P32S	ENST00000282397	NM_002019.4	32	Cct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911404	32911404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1393	123	722	0	ENST00000380152.3:c.2912T>C	p.Leu971Ser	p.L971S	ENST00000380152		971	tTa/tCa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914707	32914707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	150	731	1	ENST00000380152.3:c.6215C>T	p.Ser2072Phe	p.S2072F	ENST00000380152		2072	tCc/tTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937323	32937323	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	70	271	0	ENST00000380152.3:c.7984A>G	p.Thr2662Ala	p.T2662A	ENST00000380152		2662	Acg/Gcg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133889	41133889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1374	136	559	0	ENST00000379561.5:c.1739C>T	p.Ser580Phe	p.S580F	ENST00000379561	NM_002015.3	580	tCc/tTc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988507	36988508	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	199	408	0	ENST00000354822.5:c.145_146delinsTT	p.Pro49Phe	p.P49F	ENST00000354822	NM_001079668.2	49	CCc/TTc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609525	81609525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	211	381	0	ENST00000298171.2:c.1123G>A	p.Glu375Lys	p.E375K	ENST00000298171	NM_000369.2	375	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961408	41961408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1446	208	690	0	ENST00000219905.7:c.316C>T	p.Pro106Ser	p.P106S	ENST00000219905	NM_001164273.1	106	Cct/Tct																																																																														
MGA	23269	MSKCC	GRCh37	15	41962143	41962143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1087	147	543	1	ENST00000219905.7:c.1051G>A	p.Glu351Lys	p.E351K	ENST00000219905	NM_001164273.1	351	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	41989031	41989031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1422	144	720	1	ENST00000219905.7:c.1823C>T	p.Pro608Leu	p.P608L	ENST00000219905	NM_001164273.1	608	cCa/cTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42034965	42034965	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1487	158	646	0	ENST00000219905.7:c.4807C>T	p.Gln1603Ter	p.Q1603*	ENST00000219905	NM_001164273.1	1603	Caa/Taa																																																																														
CD276	80381	MSKCC	GRCh37	15	73995367	73995367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	38	154	0	ENST00000318443.5:c.673C>T	p.Pro225Ser	p.P225S	ENST00000318443	NM_001024736.1	225	Ccc/Tcc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472522	88472522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55890138		P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	106	455	2	ENST00000360948.2:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000360948	NM_001012338.2	678	cGa/cAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476298	88476298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	93	376	0	ENST00000360948.2:c.1834C>T	p.Pro612Ser	p.P612S	ENST00000360948	NM_001012338.2	612	Ccc/Tcc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576273	88576273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	52	133	1	ENST00000360948.2:c.1400C>T	p.Pro467Leu	p.P467L	ENST00000360948	NM_001012338.2	467	cCc/cTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680722	88680722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	99	415	0	ENST00000360948.2:c.535G>A	p.Glu179Lys	p.E179K	ENST00000360948	NM_001012338.2	179	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726680	88726680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	101	375	0	ENST00000360948.2:c.364G>A	p.Ala122Thr	p.A122T	ENST00000360948	NM_001012338.2	122	Gcc/Acc																																																																														
BLM	641	MSKCC	GRCh37	15	91312725	91312725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	128	456	1	ENST00000355112.3:c.2464C>T	p.Pro822Ser	p.P822S	ENST00000355112	NM_000057.2	822	Cct/Tct																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500417	99500417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	108	435	0	ENST00000268035.6:c.3850G>A	p.Glu1284Lys	p.E1284K	ENST00000268035	NM_000875.3	1284	Gag/Aag																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343579	343580	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1302	165	597	0	ENST00000262320.3:c.2094_2095delinsTT	p.Pro699Ser	p.P699S	ENST00000262320	NM_003502.3	698	caCCca/caTTca																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129399	2129399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	89	382	1	ENST00000219476.3:c.3254C>T	p.Ser1085Leu	p.S1085L	ENST00000219476	NM_000548.3	1085	tCg/tTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2131787	2131787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	126	376	0	ENST00000219476.3:c.3802C>T	p.Arg1268Cys	p.R1268C	ENST00000219476	NM_000548.3	1268	Cgc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857481	9857481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	88	280	0	ENST00000330684.3:c.3920C>T	p.Pro1307Leu	p.P1307L	ENST00000330684	NM_001134407.1	1307	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857805	9857805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	145	563	2	ENST00000330684.3:c.3596C>T	p.Pro1199Leu	p.P1199L	ENST00000330684	NM_001134407.1	1199	cCg/cTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892182	9892182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	123	500	0	ENST00000330684.3:c.2308C>T	p.Pro770Ser	p.P770S	ENST00000330684	NM_001134407.1	770	Cct/Tct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923318	9923318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	81	340	0	ENST00000330684.3:c.1969G>A	p.Glu657Lys	p.E657K	ENST00000330684	NM_001134407.1	657	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9928010	9928010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	114	423	1	ENST00000330684.3:c.1729G>A	p.Glu577Lys	p.E577K	ENST00000330684	NM_001134407.1	577	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032087	10032087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	130	435	0	ENST00000330684.3:c.736C>T	p.Leu246Phe	p.L246F	ENST00000330684	NM_001134407.1	246	Ctt/Ttt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273979	10273979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	120	478	0	ENST00000330684.3:c.290G>A	p.Gly97Asp	p.G97D	ENST00000330684	NM_001134407.1	97	gGc/gAc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041554	14041554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	97	337	0	ENST00000311895.7:c.2101C>G	p.Arg701Gly	p.R701G	ENST00000311895	NM_005236.2	701	Cgt/Ggt																																																																														
CDH1	999	MSKCC	GRCh37	16	68849500	68849501	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	106	415	0	ENST00000261769.5:c.1403_1404delinsTT	p.Thr468Ile	p.T468I	ENST00000261769	NM_004360.3	468	aCC/aTT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821349	72821349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	124	476	0	ENST00000268489.5:c.10826C>T	p.Ser3609Phe	p.S3609F	ENST00000268489	NM_006885.3	3609	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821433	72821433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1544	146	831	0	ENST00000268489.5:c.10742C>T	p.Pro3581Leu	p.P3581L	ENST00000268489	NM_006885.3	3581	cCt/cTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992148	72992148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	169	579	0	ENST00000268489.5:c.1897G>A	p.Glu633Lys	p.E633K	ENST00000268489	NM_006885.3	633	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993718	72993718	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	130	504	0	ENST00000268489.5:c.327A>T	p.Arg109Ser	p.R109S	ENST00000268489	NM_006885.3	109	agA/agT																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942197	81942197	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1185	129	463	1	ENST00000359376.3:c.1733+1G>A		p.X578_splice	ENST00000359376	NM_002661.3	578																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89347176	89347176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	123	568	0	ENST00000301030.4:c.5774C>T	p.Pro1925Leu	p.P1925L	ENST00000301030	NM_001256183.1	1925	cCc/cTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357215	89357215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1351	180	628	0	ENST00000301030.4:c.419C>T	p.Pro140Leu	p.P140L	ENST00000301030	NM_001256183.1	140	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	214	560	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16005024	16005024	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	76	276	0	ENST00000268712.3:c.2230C>T	p.Arg744Ter	p.R744*	ENST00000268712	NM_006311.3	744	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29556367	29556367	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	252	341	0	ENST00000358273.4:c.2734C>T	p.Gln912Ter	p.Q912*	ENST00000358273	NM_001042492.2	912	Caa/Taa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37649017	37649017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	195	291	0	ENST00000447079.4:c.2122C>T	p.Arg708Cys	p.R708C	ENST00000447079	NM_015083.1	708	Cgt/Tgt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696356	47696356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	75	348	0	ENST00000347630.2:c.467C>T	p.Thr156Ile	p.T156I	ENST00000347630	NM_001007230.1	156	aCc/aTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436016	56436016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	153	266	0	ENST00000407977.2:c.1121C>T	p.Pro374Leu	p.P374L	ENST00000407977		374	cCc/cTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439904	56439904	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	75	278	0	ENST00000407977.2:c.687+1G>A		p.X229_splice	ENST00000407977		229																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740416	58740416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777279856		P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	242	612	0	ENST00000305921.3:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000305921	NM_003620.3	441	Cgt/Tgt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78914311	78914311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	244	351	0	ENST00000306801.3:c.2935G>A	p.Asp979Asn	p.D979N	ENST00000306801	NM_020761.2	979	Gac/Aac																																																																														
YES1	7525	MSKCC	GRCh37	18	743272	743272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188857712		P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	111	582	2	ENST00000314574.4:c.868G>A	p.Glu290Lys	p.E290K	ENST00000314574	NM_005433.3	290	Gaa/Aaa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39570433	39570433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	39	305	0	ENST00000262039.4:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000262039	NM_002647.2	210	cGa/cAa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39573250	39573250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	75	409	0	ENST00000262039.4:c.731C>T	p.Ser244Phe	p.S244F	ENST00000262039	NM_002647.2	244	tCt/tTt																																																																														
INSR	3643	MSKCC	GRCh37	19	7117201	7117201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	123	482	1	ENST00000302850.5:c.4015G>A	p.Glu1339Lys	p.E1339K	ENST00000302850	NM_000208.2	1339	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144531	11144531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	91	385	0	ENST00000344626.4:c.3863C>T	p.Pro1288Leu	p.P1288L	ENST00000344626	NM_003072.3	1288	cCa/cTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272266	15272266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	115	243	0	ENST00000263388.2:c.6173C>T	p.Ser2058Leu	p.S2058L	ENST00000263388	NM_000435.2	2058	tCg/tTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272332	15272332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	148	279	0	ENST00000263388.2:c.6107C>T	p.Pro2036Leu	p.P2036L	ENST00000263388	NM_000435.2	2036	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281353	15281353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	47	179	0	ENST00000263388.2:c.4903G>A	p.Glu1635Lys	p.E1635K	ENST00000263388	NM_000435.2	1635	Gag/Aag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355342	15355342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	16	84	0	ENST00000263377.2:c.2281C>T	p.Pro761Ser	p.P761S	ENST00000263377	NM_058243.2	761	Ccc/Tcc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945795	17945795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	104	355	0	ENST00000458235.1:c.2065C>T	p.Pro689Ser	p.P689S	ENST00000458235	NM_000215.3	689	Ccc/Tcc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946779	17946779	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	238	419	0	ENST00000458235.1:c.1868G>A	p.Trp623Ter	p.W623*	ENST00000458235	NM_000215.3	623	tGg/tAg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952561	17952561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	64	285	0	ENST00000458235.1:c.872C>T	p.Pro291Leu	p.P291L	ENST00000458235	NM_000215.3	291	cCc/cTc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793175	33793175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	66	192	0	ENST00000498907.2:c.146C>T	p.Pro49Leu	p.P49L	ENST00000498907	NM_004364.3	49	cCg/cTg																																																																														
AXL	558	MSKCC	GRCh37	19	41736932	41736933	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	108	370	0	ENST00000301178.4:c.647_648delinsTT	p.Ser216Phe	p.S216F	ENST00000301178	NM_021913.4	216	tCC/tTT																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867256	45867256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	44	186	0	ENST00000391945.4:c.937G>A	p.Glu313Lys	p.E313K	ENST00000391945	NM_000400.3	313	Gaa/Aaa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910288	50910288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1602	158	684	0	ENST00000440232.2:c.1543G>A	p.Asp515Asn	p.D515N	ENST00000440232	NM_002691.3	515	Gat/Aat																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523292	9523292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	127	474	0	ENST00000353224.5:c.1945C>T	p.Leu649Phe	p.L649F	ENST00000353224	NM_177990.2	649	Ctc/Ttc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538263	9538263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	113	411	0	ENST00000353224.5:c.1735G>A	p.Asp579Asn	p.D579N	ENST00000353224	NM_177990.2	579	Gat/Aat																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561090	9561090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	71	268	0	ENST00000353224.5:c.692C>T	p.Ser231Leu	p.S231L	ENST00000353224	NM_177990.2	231	tCa/tTa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561257	9561257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	74	295	0	ENST00000353224.5:c.525G>A	p.Met175Ile	p.M175I	ENST00000353224	NM_177990.2	175	atG/atA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	75	291	0	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624949	9624949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	64	305	0	ENST00000353224.5:c.28G>A	p.Glu10Lys	p.E10K	ENST00000353224	NM_177990.2	10	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017196	31017196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	186	387	0	ENST00000375687.4:c.527C>T	p.Pro176Leu	p.P176L	ENST00000375687	NM_015338.5	176	cCt/cTt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386282	31386282	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	95	406	0	ENST00000328111.2:c.1507T>A	p.Cys503Ser	p.C503S	ENST00000328111	NM_006892.3	503	Tgc/Agc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40864884	40864884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	149	455	0	ENST00000373198.4:c.2384C>T	p.Ser795Phe	p.S795F	ENST00000373198	NM_133170.3	795	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076934	41076934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	163	391	0	ENST00000373198.4:c.1486G>A	p.Gly496Arg	p.G496R	ENST00000373198	NM_133170.3	496	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385271	41385271	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	106	299	0	ENST00000373198.4:c.690G>A	p.Trp230Ter	p.W230*	ENST00000373198	NM_133170.3	230	tgG/tgA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514563	41514563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	117	304	0	ENST00000373198.4:c.98C>T	p.Ser33Phe	p.S33F	ENST00000373198	NM_133170.3	33	tCc/tTc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264412	46264412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1629	189	644	0	ENST00000371998.3:c.1459C>T	p.Arg487Cys	p.R487C	ENST00000371998		487	Cgt/Tgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44515829	44515829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	61	406	0	ENST00000291552.4:c.224A>G	p.Gln75Arg	p.Q75R	ENST00000291552	NM_006758.2	75	cAg/cGg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655368	45655368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	268	433	0	ENST00000407780.3:c.484A>G	p.Asn162Asp	p.N162D	ENST00000407780	NM_001283052.1	162	Aac/Gac																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121013	29121013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	238	442	1	ENST00000328354.6:c.544C>T	p.Pro182Ser	p.P182S	ENST00000328354	NM_007194.3	182	Cct/Tct																																																																														
EP300	2033	MSKCC	GRCh37	22	41546183	41546183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	54	99	0	ENST00000263253.7:c.2798C>T	p.Pro933Leu	p.P933L	ENST00000263253	NM_001429.3	933	cCt/cTt																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314897	1314897	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	104	411	0				ENST00000381566																																																																																	
CRLF2	64109	MSKCC	GRCh37	X	1325361	1325361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	121	422	2	ENST00000381566.1:c.314C>T	p.Pro105Leu	p.P105L	ENST00000381566		105	cCc/cTc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44970630	44970630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	146	269	0	ENST00000377967.4:c.4180C>T	p.Pro1394Ser	p.P1394S	ENST00000377967	NM_021140.2	1394	Cct/Tct																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410525	63410525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	73	311	0	ENST00000330258.3:c.2642G>A	p.Arg881Gln	p.R881Q	ENST00000330258	NM_152424.3	881	cGa/cAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413030	63413030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	287	354	0	ENST00000330258.3:c.137C>T	p.Ser46Leu	p.S46L	ENST00000330258	NM_152424.3	46	tCa/tTa																																																																														
AR	367	MSKCC	GRCh37	X	66863246	66863246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	91	169	0	ENST00000374690.3:c.1765G>A	p.Glu589Lys	p.E589K	ENST00000374690	NM_000044.3	589	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974743	21974747	+	frameshift_variant	Frame_Shift_Del	DEL	CACCT	CACCT	GTG			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	95	244	0	ENST00000304494.5:c.80_84delinsCAC	p.Glu27AlafsTer16	p.E27Afs*16	ENST00000304494	NM_000077.4	27	gAGGTG/gCAC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974743	21974747	+	frameshift_variant	Frame_Shift_Del	DEL	CACCT	CACCT	GTG			P-0009752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	95	244	0	ENST00000304494.5:c.80_84delinsCAC	p.Glu27AlafsTer16	p.E27Afs*16	ENST00000304494	NM_000077.4	27	gAGGTG/gCAC																																																																														
PARP1	142	MSKCC	GRCh37	1	226570788	226570788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	208	312	0	ENST00000366794.5:c.1108C>T	p.Pro370Ser	p.P370S	ENST00000366794	NM_001618.3	370	Ccg/Tcg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295699	212295699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	131	422	0	ENST00000342788.4:c.2614G>A	p.Glu872Lys	p.E872K	ENST00000342788	NM_005235.2	872	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	735	699	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807901	1807901	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	259	388	2	ENST00000260795.2:c.1959+1G>A		p.X653_splice	ENST00000260795		653																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	582	309	0				ENST00000310581	NM_198253.2																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8486346	8486346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	65	117	1	ENST00000356435.5:c.2471C>T	p.Pro824Leu	p.P824L	ENST00000356435		824	cCa/cTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	107	138	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	107	138	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391527	139391527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	592	524	1	ENST00000277541.6:c.6664C>T	p.Pro2222Ser	p.P2222S	ENST00000277541	NM_017617.3	2222	Ccg/Tcg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401377	139401377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	793	317	0	ENST00000277541.6:c.3692C>T	p.Pro1231Leu	p.P1231L	ENST00000277541	NM_017617.3	1231	cCc/cTc																																																																														
RET	5979	MSKCC	GRCh37	10	43615064	43615064	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	298	502	1	ENST00000355710.3:c.2478C>A	p.Tyr826Ter	p.Y826*	ENST00000355710	NM_020975.4	826	taC/taA																																																																														
ATM	472	MSKCC	GRCh37	11	108183205	108183205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	119	408	0	ENST00000278616.4:c.5986G>A	p.Glu1996Lys	p.E1996K	ENST00000278616	NM_000051.3	1996	Gaa/Aaa																																																																														
CBL	867	MSKCC	GRCh37	11	119156031	119156032	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	321	559	1	ENST00000264033.4:c.1696_1697delinsTT	p.Pro566Phe	p.P566F	ENST00000264033	NM_005188.3	566	CCt/TTt																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945066	31945066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	318	536	0	ENST00000340398.3:c.35C>T	p.Thr12Ile	p.T12I	ENST00000340398	NM_001013699.2	12	aCc/aTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49449105	49449105	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	203	396	0	ENST00000301067.7:c.3G>A	p.Met1?	p.M1?	ENST00000301067	NM_003482.3	1	atG/atA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32890664	32890664	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	168	317	0	ENST00000380152.3:c.67G>A	p.Asp23Asn	p.D23N	ENST00000380152		23	Gat/Aat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347716	89347717	+	missense_variant	Missense_Mutation	DNP	GA	GA	AC			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	346	710	1	ENST00000301030.4:c.5233_5234delinsGT	p.Ser1745Val	p.S1745V	ENST00000301030	NM_001256183.1	1745	TCc/GTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	244	370	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577085	+	missense_variant	Missense_Mutation	ONP	CCTC	CCTC	TCTT			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	619	516	0	ENST00000269305.4:c.853_856delinsAAGA	p.Glu285_Glu286delinsLysLys	p.E285_E286delinsKK	ENST00000269305	NM_001126112.2	285	GAGGaa/AAGAaa																																																																														
AXL	558	MSKCC	GRCh37	19	41745133	41745133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	306	605	2	ENST00000301178.4:c.1199C>T	p.Ser400Phe	p.S400F	ENST00000301178	NM_021913.4	400	tCc/tTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41527520	41527520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	279	416	0	ENST00000263253.7:c.1411C>T	p.Leu471Phe	p.L471F	ENST00000263253	NM_001429.3	471	Ctt/Ttt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540491	187540523	+	inframe_deletion	In_Frame_Del	DEL	CATCATAGGCTTTTACACAGGTCACGAAATGCC	CATCATAGGCTTTTACACAGGTCACGAAATGCC	-			P-0009795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	33	252	0	ENST00000441802.2:c.7217_7249del	p.Gly2406_Asp2416del	p.G2406_D2416del	ENST00000441802	NM_005245.3	2406	gGGCATTTCGTGACCTGTGTAAAAGCCTATGATGca/gca																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31379479	31379479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145632647		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	53	525	0	ENST00000328111.2:c.886G>A	p.Val296Ile	p.V296I	ENST00000328111	NM_006892.3	296	Gtc/Atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	55	486	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	36	408	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	47	478	1	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	24	67	1				ENST00000310581	NM_198253.2																																																																																
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	58	257	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	42	397	1	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	42	374	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78935196	78935196	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	63	412	0	ENST00000306801.3:c.3608G>A	p.Arg1203His	p.R1203H	ENST00000306801	NM_020761.2	1203	cGc/cAc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125499299	125499299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	29	424	2	ENST00000428830.2:c.368G>T	p.Gly123Val	p.G123V	ENST00000428830	NM_001114121.2	123	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	108	117	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	108	117	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	43	365	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680656	88680656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	35	481	0	ENST00000360948.2:c.601C>T	p.Arg201Cys	p.R201C	ENST00000360948	NM_001012338.2	201	Cgc/Tgc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225603	2225603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	83	354	2	ENST00000326181.6:c.1606G>A	p.Gly536Ser	p.G536S	ENST00000326181	NM_032271.2	536	Ggc/Agc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864656	37864656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	51	574	0	ENST00000269571.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000269571		103	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862749	9862749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150316865		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	17	454	0	ENST00000330684.3:c.2554G>A	p.Val852Met	p.V852M	ENST00000330684	NM_001134407.1	852	Gtg/Atg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	19	226	2	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	54	290	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	108	117	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780062	9780062	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	77	415	0	ENST00000377346.4:c.1326G>A	p.Trp442Ter	p.W442*	ENST00000377346	NM_005026.3	442	tgG/tgA																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459254	120459254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	44	263	0	ENST00000256646.2:c.6091G>T	p.Asp2031Tyr	p.D2031Y	ENST00000256646	NM_024408.3	2031	Gac/Tac																																																																														
ALK	238	MSKCC	GRCh37	2	29446220	29446220	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	30	485	1	ENST00000389048.3:c.3347T>C	p.Ile1116Thr	p.I1116T	ENST00000389048	NM_004304.4	1116	aTc/aCc																																																																														
REL	5966	MSKCC	GRCh37	2	61149221	61149221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	14	333	0	ENST00000295025.8:c.1411G>A	p.Gly471Arg	p.G471R	ENST00000295025	NM_002908.2	471	Gga/Aga																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663429	227663429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	39	122	0	ENST00000305123.5:c.26G>A	p.Gly9Asp	p.G9D	ENST00000305123	NM_005544.2	9	gGc/gAc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185184670	185184670	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188669013		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	29	634	1	ENST00000265026.3:c.1562G>A	p.Arg521His	p.R521H	ENST00000265026	NM_004721.4	521	cGt/cAt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435832	149435832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	42	492	0	ENST00000286301.3:c.2392G>A	p.Gly798Arg	p.G798R	ENST00000286301	NM_005211.3	798	Ggg/Agg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910553	29910553	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	16	118	0	ENST00000376809.5:c.93T>A	p.Tyr31Ter	p.Y31*	ENST00000376809	NM_002116.7	31	taT/taA																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730074	41730074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	24	958	1	ENST00000242208.4:c.455G>A	p.Arg152His	p.R152H	ENST00000242208	NM_002192.2	152	cGt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836804	151836804	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	28	532	0	ENST00000262189.6:c.14416C>T	p.Arg4806Ter	p.R4806*	ENST00000262189	NM_170606.2	4806	Cga/Tga																																																																														
RET	5979	MSKCC	GRCh37	10	43600600	43600600	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139213499		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	94	455	2	ENST00000355710.3:c.826G>A	p.Val276Ile	p.V276I	ENST00000355710	NM_020975.4	276	Gtc/Atc																																																																														
ATM	472	MSKCC	GRCh37	11	108129731	108129731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	18	471	0	ENST00000278616.4:c.2395G>A	p.Ala799Thr	p.A799T	ENST00000278616	NM_000051.3	799	Gca/Aca																																																																														
CBL	867	MSKCC	GRCh37	11	119145624	119145624	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	40	487	0	ENST00000264033.4:c.830T>C	p.Val277Ala	p.V277A	ENST00000264033	NM_005188.3	277	gTg/gCg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	443551	443551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	21	411	1	ENST00000399788.2:c.1346C>A	p.Pro449His	p.P449H	ENST00000399788	NM_001042603.1	449	cCt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445808	49445808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	72	715	1	ENST00000301067.7:c.1658C>A	p.Pro553His	p.P553H	ENST00000301067	NM_003482.3	553	cCt/cAt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549019	21549019	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	41	209	0	ENST00000382592.4:c.3257T>C	p.Val1086Ala	p.V1086A	ENST00000382592	NM_014572.2	1086	gTg/gCg																																																																														
RB1	5925	MSKCC	GRCh37	13	49030384	49030384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	49	332	0	ENST00000267163.4:c.1859C>T	p.Thr620Met	p.T620M	ENST00000267163	NM_000321.2	620	aCg/aTg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987207	36987207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	40	157	0	ENST00000354822.5:c.482C>T	p.Pro161Leu	p.P161L	ENST00000354822	NM_001079668.2	161	cCg/cTg																																																																														
MGA	23269	MSKCC	GRCh37	15	41988445	41988445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	26	847	1	ENST00000219905.7:c.1237G>A	p.Val413Ile	p.V413I	ENST00000219905	NM_001164273.1	413	Gta/Ata																																																																														
BLM	641	MSKCC	GRCh37	15	91347568	91347568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	22	435	0	ENST00000355112.3:c.3730G>A	p.Val1244Ile	p.V1244I	ENST00000355112	NM_000057.2	1244	Gtc/Atc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348061	348061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	76	306	0	ENST00000262320.3:c.1445C>A	p.Pro482His	p.P482H	ENST00000262320	NM_003502.3	482	cCt/cAt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133798	2133798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45517323		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	62	337	0	ENST00000219476.3:c.3986G>A	p.Arg1329His	p.R1329H	ENST00000219476	NM_000548.3	1329	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984685	72984685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	62	735	1	ENST00000268489.5:c.2899G>A	p.Val967Met	p.V967M	ENST00000268489	NM_006885.3	967	Gtg/Atg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534326	63534326	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	91	484	0	ENST00000307078.5:c.1195C>T	p.Arg399Ter	p.R399*	ENST00000307078	NM_004655.3	399	Cga/Tga																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222056	2222056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	84	502	0	ENST00000398665.3:c.2888C>T	p.Ala963Val	p.A963V	ENST00000398665	NM_032482.2	963	gCc/gTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7120688	7120688	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28933086		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	12	634	3	ENST00000302850.5:c.3602G>A	p.Arg1201Gln	p.R1201Q	ENST00000302850	NM_000208.2	1201	cGg/cAg																																																																														
INSR	3643	MSKCC	GRCh37	19	7163043	7163043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	25	431	0	ENST00000302850.5:c.2029G>A	p.Gly677Arg	p.G677R	ENST00000302850	NM_000208.2	677	Ggg/Agg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291588	15291588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	82	534	1	ENST00000263388.2:c.3046G>A	p.Val1016Ile	p.V1016I	ENST00000263388	NM_000435.2	1016	Gtc/Atc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912399	50912399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	91	652	0	ENST00000440232.2:c.1913T>C	p.Ile638Thr	p.I638T	ENST00000440232	NM_002691.3	638	aTc/aCc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024474	31024474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	43	433	1	ENST00000375687.4:c.3959C>T	p.Ala1320Val	p.A1320V	ENST00000375687	NM_015338.5	1320	gCg/gTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877385	40877385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	13	337	1	ENST00000373198.4:c.2311G>A	p.Ala771Thr	p.A771T	ENST00000373198	NM_133170.3	771	Gct/Act																																																																														
EP300	2033	MSKCC	GRCh37	22	41573156	41573156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	62	318	0	ENST00000263253.7:c.5441G>A	p.Arg1814Gln	p.R1814Q	ENST00000263253	NM_001429.3	1814	cGg/cAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028820	47028820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	84	299	3	ENST00000329236.7:c.124C>T	p.Arg42Cys	p.R42C	ENST00000329236	NM_001204466.1	42	Cgt/Tgt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410553	63410553	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	61	372	0	ENST00000330258.3:c.2614T>C	p.Tyr872His	p.Y872H	ENST00000330258	NM_152424.3	872	Tac/Cac																																																																														
JAK3	3718	MSKCC	GRCh37	19	17941419	17941420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	25	291	0	ENST00000458235.1:c.2988dup	p.Glu997ArgfsTer45	p.E997Rfs*45	ENST00000458235	NM_000215.3	996	-/C																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	23	482	2	ENST00000409792.3:c.843delA	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	39	823	0	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878069	151878070	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			35	13	338	0	ENST00000262189.6:c.6875dup	p.Ser2293IlefsTer5	p.S2293Ifs*5	ENST00000262189	NM_170606.2	2292	cca/ccCa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932110	39932111	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0009858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	42	258	0	ENST00000378444.4:c.2488_2489del	p.Ser830CysfsTer6	p.S830Cfs*6	ENST00000378444	NM_001123385.1	830	AGt/t																																																																														
RB1	5925	MSKCC	GRCh37	13	48954210	48954210	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	139	366	0	ENST00000267163.4:c.1411C>T	p.Gln471Ter	p.Q471*	ENST00000267163	NM_000321.2	471	Caa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	97	190	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38991102	38991102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	198	388	0	ENST00000357387.3:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000357387	NM_152756.3	178	Caa/Taa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	40	300	0	ENST00000318789.4:c.1531-1G>A		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966275	25966275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	223	395	1	ENST00000435504.4:c.2931G>A	p.Met977Ile	p.M977I	ENST00000435504		977	atG/atA																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795073	242795073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	201	491	0	ENST00000334409.5:c.136G>A	p.Glu46Lys	p.E46K	ENST00000334409	NM_005018.2	46	Gaa/Aaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808865	1808865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	314	584	0	ENST00000260795.2:c.2297C>T	p.Pro766Leu	p.P766L	ENST00000260795		766	cCt/cTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510225	187510225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	59	426	0	ENST00000441802.2:c.13288G>A	p.Asp4430Asn	p.D4430N	ENST00000441802	NM_005245.3	4430	Gac/Aac																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056443	26056443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	85	154	0	ENST00000343677.2:c.214G>A	p.Asp72Asn	p.D72N	ENST00000343677	NM_005319.3	72	Gat/Aat																																																																														
FYN	2534	MSKCC	GRCh37	6	112024200	112024200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1155	356	633	0	ENST00000368678.4:c.585G>A	p.Met195Ile	p.M195I	ENST00000368678		195	atG/atA																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137525611	137525611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	170	409	0	ENST00000367739.4:c.404G>A	p.Arg135Lys	p.R135K	ENST00000367739	NM_000416.2	135	aGa/aAa																																																																														
HGF	3082	MSKCC	GRCh37	7	81388032	81388032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	258	476	0	ENST00000222390.5:c.343G>A	p.Glu115Lys	p.E115K	ENST00000222390	NM_000601.4	115	Gaa/Aaa																																																																														
SMO	6608	MSKCC	GRCh37	7	128852057	128852057	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	234	409	0	ENST00000249373.3:c.2129A>T	p.Gln710Leu	p.Q710L	ENST00000249373	NM_005631.4	710	cAg/cTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135796814	135796814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	229	427	0	ENST00000298552.3:c.673G>A	p.Glu225Lys	p.E225K	ENST00000298552	NM_001162426.1	225	Gag/Aag																																																																														
TET1	80312	MSKCC	GRCh37	10	70432753	70432753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	284	475	0	ENST00000373644.4:c.4775G>A	p.Arg1592Lys	p.R1592K	ENST00000373644	NM_030625.2	1592	aGa/aAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15938102	15938102	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	225	428	0	ENST00000268712.3:c.7112G>A	p.Trp2371Ter	p.W2371*	ENST00000268712	NM_006311.3	2371	tGg/tAg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968195	15968195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	292	458	5	ENST00000268712.3:c.5090C>A	p.Ser1697Tyr	p.S1697Y	ENST00000268712	NM_006311.3	1697	tCc/tAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004687	16004687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	333	583	1	ENST00000268712.3:c.2567G>A	p.Arg856Lys	p.R856K	ENST00000268712	NM_006311.3	856	aGa/aAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012190	16012190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	188	425	0	ENST00000268712.3:c.2092C>T	p.Gln698Ter	p.Q698*	ENST00000268712	NM_006311.3	698	Caa/Taa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29120995	29120995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	303	490	0	ENST00000328354.6:c.562G>A	p.Glu188Lys	p.E188K	ENST00000328354	NM_007194.3	188	Gaa/Aaa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130673	29130673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	129	277	0	ENST00000328354.6:c.37C>A	p.His13Asn	p.H13N	ENST00000328354	NM_007194.3	13	Cat/Aat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039859	47039859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	216	426	0	ENST00000329236.7:c.968C>T	p.Ser323Phe	p.S323F	ENST00000329236	NM_001204466.1	323	tCt/tTt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123229252	123229252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	319	514	1	ENST00000218089.9:c.3736G>A	p.Glu1246Lys	p.E1246K	ENST00000218089	NM_001042749.1	1246	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	90	147	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	93	195	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	323	538	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651946	36651947	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	271	310	0	ENST00000244741.5:c.71dup	p.Val25SerfsTer11	p.V25Sfs*11	ENST00000244741	NM_000389.4	23	ggc/ggCc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246638	46246638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	87	206	0	ENST00000334344.6:c.4732C>T	p.Gln1578Ter	p.Q1578*	ENST00000334344	NM_152641.2	1578	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427932	49427932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	302	553	0	ENST00000301067.7:c.10658G>A	p.Gly3553Asp	p.G3553D	ENST00000301067	NM_003482.3	3553	gGc/gAc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226387	41226387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	225	600	0	ENST00000357654.3:c.4636G>T	p.Asp1546Tyr	p.D1546Y	ENST00000357654	NM_007294.3	1546	Gat/Tat																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115947	8115948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0009876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	109	216	0	ENST00000346208.3:c.1294_1295dup	p.His434ThrfsTer42	p.H434Tfs*42	ENST00000346208		431	-/CC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	197	408	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0009878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	305	654	1	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
CDH1	999	MSKCC	GRCh37	16	68771360	68771360	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	177	206	0	ENST00000261769.5:c.42del	p.Leu15CysfsTer41	p.L15Cfs*41	ENST00000261769	NM_004360.3	14	ctG/ct																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115809	8115809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1478	454	719	0	ENST00000346208.3:c.1158del	p.Lys387ArgfsTer17	p.K387Rfs*17	ENST00000346208		385	ttC/tt																																																																														
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	DEL	GT	GT	-			P-0009878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	106	198	2	ENST00000412916.2:c.165+1_165+2del		p.X55_splice	ENST00000412916		55																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419924	+	missense_variant	Missense_Mutation	DNP	AT	AT	CA			P-0009878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	205	347	0	ENST00000206249.3:c.1610_1611delinsCA	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAT/tCA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	251	330	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	123	299	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108186815	108186815	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	399	656	0	ENST00000278616.4:c.6173C>G	p.Ser2058Ter	p.S2058*	ENST00000278616	NM_000051.3	2058	tCa/tGa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	142950023	142950023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	401	594	0	ENST00000262992.4:c.2687G>C	p.Arg896Thr	p.R896T	ENST00000262992	NM_001101669.1	896	aGa/aCa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139392001	139392001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	169	415	1	ENST00000277541.6:c.6190C>T	p.Pro2064Ser	p.P2064S	ENST00000277541	NM_017617.3	2064	Ccc/Tcc																																																																														
MGA	23269	MSKCC	GRCh37	15	42035343	42035343	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1384	77	809	0	ENST00000219905.7:c.5185G>C	p.Gly1729Arg	p.G1729R	ENST00000219905	NM_001164273.1	1729	Ggg/Cgg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56402549	56402549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	107	571	0	ENST00000348428.3:c.1591G>A	p.Glu531Lys	p.E531K	ENST00000348428	NM_006785.3	531	Gaa/Aaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138491	11138491	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	331	545	1	ENST00000344626.4:c.3247G>T	p.Glu1083Ter	p.E1083*	ENST00000344626	NM_003072.3	1083	Gag/Tag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53241016	53241016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	135	416	0	ENST00000375401.3:c.1195G>C	p.Glu399Gln	p.E399Q	ENST00000375401	NM_004187.3	399	Gag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	143	101	0				ENST00000310581	NM_198253.2																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	441	507	0	ENST00000335508.6:c.2704G>C	p.Glu902Gln	p.E902Q	ENST00000335508	NM_012433.2	902	Gaa/Caa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183559	10183559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	216	403	0	ENST00000256474.2:c.28G>A	p.Glu10Lys	p.E10K	ENST00000256474	NM_000551.3	10	Gag/Aag																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783211	9783211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	488	429	1	ENST00000377346.4:c.2455G>A	p.Gly819Arg	p.G819R	ENST00000377346	NM_005026.3	819	Ggg/Agg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057862	27057862	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	686	668	0	ENST00000324856.7:c.1570C>T	p.Gln524Ter	p.Q524*	ENST00000324856	NM_006015.4	524	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057868	27057868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	629	650	0	ENST00000324856.7:c.1576C>T	p.Pro526Ser	p.P526S	ENST00000324856	NM_006015.4	526	Cca/Tca																																																																														
STK40	83931	MSKCC	GRCh37	1	36808977	36808977	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	66	596	0	ENST00000373129.3:c.1077T>A	p.Asp359Glu	p.D359E	ENST00000373129	NM_032017.1	359	gaT/gaA																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067161	37067161	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	538	403	0	ENST00000231790.2:c.1072G>T	p.Glu358Ter	p.E358*	ENST00000231790	NM_000249.3	358	Gag/Tag																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149440521	149440521	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	227	379	0	ENST00000286301.3:c.1873G>C	p.Asp625His	p.D625H	ENST00000286301	NM_005211.3	625	Gat/Cat																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523692	148523692	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	43	449	0	ENST00000320356.2:c.761G>C	p.Gly254Ala	p.G254A	ENST00000320356	NM_004456.4	254	gGc/gCc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152008922	152008922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	389	489	0	ENST00000262189.6:c.700C>T	p.Pro234Ser	p.P234S	ENST00000262189	NM_170606.2	234	Cca/Tca																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807919	3807919	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	253	436	0	ENST00000262367.5:c.3500A>G	p.Tyr1167Cys	p.Y1167C	ENST00000262367	NM_004380.2	1167	tAt/tGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821110	72821110	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	400	826	0	ENST00000268489.5:c.11065A>T	p.Lys3689Ter	p.K3689*	ENST00000268489	NM_006885.3	3689	Aag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881111	37881111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	249	558	1	ENST00000269571.5:c.2440C>T	p.Arg814Cys	p.R814C	ENST00000269571		814	Cgc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76939241	76939241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	624	675	0	ENST00000373344.5:c.1507C>G	p.Gln503Glu	p.Q503E	ENST00000373344	NM_000489.3	503	Caa/Gaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262298	16262298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	61	124	0	ENST00000375759.3:c.9563C>T	p.Pro3188Leu	p.P3188L	ENST00000375759	NM_015001.2	3188	cCc/cTc																																																																														
STK40	83931	MSKCC	GRCh37	1	36807399	36807399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	286	389	0	ENST00000373129.3:c.1265C>T	p.Ser422Phe	p.S422F	ENST00000373129	NM_032017.1	422	tCc/tTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468348	120468348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	152	189	0	ENST00000256646.2:c.4091C>T	p.Pro1364Leu	p.P1364L	ENST00000256646	NM_024408.3	1364	cCc/cTc																																																																														
BARD1	580	MSKCC	GRCh37	2	215645876	215645876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	314	665	0	ENST00000260947.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000260947	NM_000465.2	241	tCc/tTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275254	41275254	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	192	276	0	ENST00000349496.5:c.1420C>T	p.Arg474Ter	p.R474*	ENST00000349496	NM_001904.3	474	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271243	153271243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	195	430	0	ENST00000281708.4:c.535C>T	p.Arg179Cys	p.R179C	ENST00000281708	NM_033632.3	179	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	175	225	0				ENST00000310581	NM_198253.2																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67575535	67575535	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	221	346	0	ENST00000274335.5:c.608A>G	p.Tyr203Cys	p.Y203C	ENST00000274335		203	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112174658	112174658	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	322	536	3	ENST00000257430.4:c.3367C>T	p.Gln1123Ter	p.Q1123*	ENST00000257430	NM_000038.5	1123	Caa/Taa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515291	149515291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	244	385	2	ENST00000261799.4:c.191G>A	p.Arg64Gln	p.R64Q	ENST00000261799	NM_002609.3	64	cGg/cAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467675	50467675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759124417		P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	198	368	0	ENST00000331340.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000331340	NM_006060.4	304	Gaa/Aaa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	381	765	2	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	463298	463298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	317	552	2	ENST00000399788.2:c.973C>T	p.Pro325Ser	p.P325S	ENST00000399788	NM_001042603.1	325	Cct/Tct																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025596	1025596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	282	424	1	ENST00000358495.3:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000358495	NM_134424.2	260	cGg/cAg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2221265	2221265	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	260	461	0	ENST00000326181.6:c.349G>A	p.Glu117Lys	p.E117K	ENST00000326181	NM_032271.2	117	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788618	3788619	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	224	510	0	ENST00000262367.5:c.4335_4336delinsTT	p.Arg1446Cys	p.R1446C	ENST00000262367	NM_004380.2	1445	ctCCgc/ctTTgc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59870968	59870968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	194	545	1	ENST00000259008.2:c.1463C>T	p.Pro488Leu	p.P488L	ENST00000259008	NM_032043.2	488	cCc/cTc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226023	53226024	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	362	323	0	ENST00000375401.3:c.2825_2826delinsTT	p.Ala942Val	p.A942V	ENST00000375401	NM_004187.3	942	gCC/gTT																																																																														
BTK	695	MSKCC	GRCh37	X	100626668	100626668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	342	282	0	ENST00000308731.7:c.262G>A	p.Glu88Lys	p.E88K	ENST00000308731	NM_000061.2	88	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151935825	151935825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			13	10	13	0	ENST00000262189.6:c.2619del	p.Gln873HisfsTer40	p.Q873Hfs*40	ENST00000262189	NM_170606.2	873	caG/ca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98232189	98232190	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	234	399	0	ENST00000331920.6:c.1752_1753insA	p.Phe585IlefsTer42	p.F585Ifs*42	ENST00000331920	NM_000264.3	584	-/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	345	356	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	172	239	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649565	206649565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	46	268	1	ENST00000367120.3:c.400C>T	p.Arg134Cys	p.R134C	ENST00000367120	NM_014002.3	134	Cgc/Tgc																																																																														
IL10	3586	MSKCC	GRCh37	1	206943231	206943231	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	302	352	0	ENST00000423557.1:c.387T>G	p.Phe129Leu	p.F129L	ENST00000423557	NM_000572.2	129	ttT/ttG																																																																														
ATR	545	MSKCC	GRCh37	3	142275369	142275369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	250	309	0	ENST00000350721.4:c.1934G>C	p.Arg645Thr	p.R645T	ENST00000350721	NM_001184.3	645	aGa/aCa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983804	15983804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	355	398	0	ENST00000268712.3:c.3318G>T	p.Lys1106Asn	p.K1106N	ENST00000268712	NM_006311.3	1106	aaG/aaT																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59853857	59853857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	358	613	0	ENST00000259008.2:c.2002G>A	p.Glu668Lys	p.E668K	ENST00000259008	NM_032043.2	668	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41531841	41531841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	461	539	0	ENST00000263253.7:c.1553G>C	p.Gly518Ala	p.G518A	ENST00000263253	NM_001429.3	518	gGa/gCa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317539	1317539	+	downstream_gene_variant	3'Flank	SNP	C	C	G			P-0009941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	409	564	0				ENST00000381566																																																																																	
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009992-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	92	102	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0009992-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	154	540	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	99	150	2				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0010033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	135	301	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420871	49420871	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	283	421	0	ENST00000301067.7:c.14878C>T	p.Arg4960Ter	p.R4960*	ENST00000301067	NM_003482.3	4960	Cga/Tga																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612735	228612735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	923	906	2	ENST00000366696.1:c.292G>A	p.Glu98Lys	p.E98K	ENST00000366696	NM_003493.2	98	Gag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631279	176631279	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	39	572	1	ENST00000439151.2:c.1222G>T	p.Gly408Ter	p.G408*	ENST00000439151	NM_022455.4	408	Gga/Tga																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481581	20481581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	70	466	1	ENST00000346618.3:c.650G>T	p.Arg217Met	p.R217M	ENST00000346618	NM_001949.4	217	aGg/aTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673189	30673189	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	251	398	0	ENST00000376406.3:c.3771C>G	p.Asp1257Glu	p.D1257E	ENST00000376406	NM_014641.2	1257	gaC/gaG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891591	151891591	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	216	446	0	ENST00000262189.6:c.4441C>T	p.Arg1481Ter	p.R1481*	ENST00000262189	NM_170606.2	1481	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432174	49432174	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	286	445	0	ENST00000301067.7:c.8965G>T	p.Glu2989Ter	p.E2989*	ENST00000301067	NM_003482.3	2989	Gag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	179	411	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0010059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	49	465	0				ENST00000310581	NM_198253.2																																																																																
MTOR	2475	MSKCC	GRCh37	1	11217299	11217299	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	99	673	0	ENST00000361445.4:c.4379T>C	p.Leu1460Pro	p.L1460P	ENST00000361445	NM_004958.3	1460	cTt/cCt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	246	324	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0010103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	239	398	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120461152	120461152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	329	315	0	ENST00000256646.2:c.5806G>T	p.Asp1936Tyr	p.D1936Y	ENST00000256646	NM_024408.3	1936	Gat/Tat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151900075	151900075	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	74	494	0	ENST00000262189.6:c.4036A>T	p.Lys1346Ter	p.K1346*	ENST00000262189	NM_170606.2	1346	Aag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786797	3786797	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	405	406	0	ENST00000262367.5:c.4414T>C	p.Trp1472Arg	p.W1472R	ENST00000262367	NM_004380.2	1472	Tgg/Cgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427439	49427482	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTTGCTGCTGTTGGGCCAGAGCTGTATTAAGGAAGGGGCCAC	CTGTTGCTGCTGTTGGGCCAGAGCTGTATTAAGGAAGGGGCCAC	-			P-0010103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	319	512	0	ENST00000301067.7:c.11006_11049del	p.Gly3669AlafsTer29	p.G3669Afs*29	ENST00000301067	NM_003482.3	3669	gGTGGCCCCTTCCTTAATACAGCTCTGGCCCAACAGCAGCAACAG/g																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874712	151874712	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	311	417	0	ENST00000262189.6:c.7826del	p.Arg2609HisfsTer38	p.R2609Hfs*38	ENST00000262189	NM_170606.2	2609	cGa/ca																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652088	36652098	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTGGCCTGC	CCTTGGCCTGC	-			P-0010103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	384	431	0	ENST00000244741.5:c.212_222del	p.Leu71GlnfsTer14	p.L71Qfs*14	ENST00000244741	NM_000389.4	70	ggCCTTGGCCTGCcc/ggcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	140	392	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	60	216	0				ENST00000310581	NM_198253.2																																																																																
CDKN2C	1031	MSKCC	GRCh37	1	51439696	51439696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	113	430	0	ENST00000262662.1:c.261G>C	p.Gln87His	p.Q87H	ENST00000262662		87	caG/caC																																																																														
DAXX	1616	MSKCC	GRCh37	6	33290691	33290691	+	5_prime_UTR_variant	5'UTR	SNP	T	T	A			P-0010111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	191	522	0	ENST00000374542.5:c.-105A>T		p.*35*	ENST00000374542	NM_001141970.1																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15272335	15272335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	34	340	0	ENST00000263388.2:c.6104G>A	p.Gly2035Asp	p.G2035D	ENST00000263388	NM_000435.2	2035	gGt/gAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	287	358	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	171	151	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	327	193	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579692	7579719	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCCTTACCAGAACGTTGTTTTCAGGAA	GTCCTTACCAGAACGTTGTTTTCAGGAA	-			P-0010148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	801	540	0	ENST00000269305.4:c.77_96+8del		p.X26_splice	ENST00000269305	NM_001126112.2	26																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	243	369	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	60	221	0				ENST00000310581	NM_198253.2																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25463237	25463237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	36	481	0	ENST00000264709.3:c.2256C>G	p.Phe752Leu	p.F752L	ENST00000264709	NM_175629.2	752	ttC/ttG																																																																														
PARK2	5071	MSKCC	GRCh37	6	161781201	161781201	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55830907		P-0010220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	51	502	0	ENST00000366898.1:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000366898	NM_004562.2	402	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	106	176	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	106	176	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	106	176	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	283	410	2	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158636926	158636926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	346	681	3	ENST00000263640.3:c.254C>T	p.Pro85Leu	p.P85L	ENST00000263640	NM_001105.4	85	cCg/cTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412279	139412279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	51	558	0	ENST00000277541.6:c.1366T>C	p.Cys456Arg	p.C456R	ENST00000277541	NM_017617.3	456	Tgc/Cgc																																																																														
NF1	4763	MSKCC	GRCh37	17	29592318	29592318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	300	495	0	ENST00000358273.4:c.4796C>G	p.Ser1599Cys	p.S1599C	ENST00000358273	NM_001042492.2	1599	tCc/tGc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266861	18266861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	21	189	0	ENST00000222254.8:c.172C>A	p.Pro58Thr	p.P58T	ENST00000222254	NM_005027.3	58	Ccc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	208	205	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1279	462	448	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609673	28609673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	360	460	0	ENST00000241453.7:c.1556C>T	p.Ser519Phe	p.S519F	ENST00000241453	NM_004119.2	519	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	368	426	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702588	52702588	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	497	416	1	ENST00000394830.3:c.310G>T	p.Glu104Ter	p.E104*	ENST00000394830	NM_018313.4	104	Gaa/Taa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99169254	99169254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	373	549	0	ENST00000074304.5:c.1184C>T	p.Ser395Leu	p.S395L	ENST00000074304	NM_001134224.1	395	tCa/tTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391126	89391126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	400	394	1	ENST00000336596.2:c.1192G>A	p.Asp398Asn	p.D398N	ENST00000336596	NM_005233.5	398	Gac/Aac																																																																														
RAD50	10111	MSKCC	GRCh37	5	131973805	131973805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	419	387	0	ENST00000265335.6:c.3508G>A	p.Asp1170Asn	p.D1170N	ENST00000265335		1170	Gat/Aat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786061	135786061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	345	409	0	ENST00000298552.3:c.1160C>T	p.Pro387Leu	p.P387L	ENST00000298552	NM_001162426.1	387	cCt/cTt																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200309	67200309	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	243	341	0	ENST00000312629.5:c.616+1G>T		p.X206_splice	ENST00000312629	NM_003952.2	206																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495016	56495016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	175	415	0	ENST00000267101.3:c.3373C>T	p.Arg1125Trp	p.R1125W	ENST00000267101	NM_001982.3	1125	Cgg/Tgg																																																																														
MGA	23269	MSKCC	GRCh37	15	42058975	42058975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	571	651	1	ENST00000219905.7:c.8695C>T	p.Pro2899Ser	p.P2899S	ENST00000219905	NM_001164273.1	2899	Ccc/Tcc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128249	30128249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	573	698	0	ENST00000263025.4:c.983C>T	p.Pro328Leu	p.P328L	ENST00000263025	NM_002746.2	328	cCc/cTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70352280	70352280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	605	330	0	ENST00000374080.3:c.4307C>T	p.Pro1436Leu	p.P1436L	ENST00000374080		1436	cCc/cTc																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158401	26158402	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0010232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	318	339	0	ENST00000289316.2:c.4_5delinsTT	p.Pro2Phe	p.P2F	ENST00000289316	NM_138720.2	2	CCt/TTt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	681	370	0	ENST00000369535.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000369535	NM_002524.4	13	Ggt/Tgt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	199	382	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295672	212295672	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	334	467	0	ENST00000342788.4:c.2641A>T	p.Lys881Ter	p.K881*	ENST00000342788	NM_005235.2	881	Aag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	290	489	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119545685	119545685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	372	320	0	ENST00000316626.5:c.1252C>A	p.Arg418Ser	p.R418S	ENST00000316626		418	Cgt/Agt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	122	103	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876293	35876293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	48	392	0	ENST00000303115.3:c.1085G>A	p.Gly362Glu	p.G362E	ENST00000303115	NM_002185.3	362	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964510	93964510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	62	560	0	ENST00000369303.4:c.2387G>A	p.Gly796Glu	p.G796E	ENST00000369303	NM_004440.3	796	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974338	93974338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	707	663	1	ENST00000369303.4:c.1716G>A	p.Met572Ile	p.M572I	ENST00000369303	NM_004440.3	572	atG/atA																																																																														
ESR1	2099	MSKCC	GRCh37	6	152420081	152420081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	61	401	0	ENST00000206249.3:c.1768G>A	p.Gly590Ser	p.G590S	ENST00000206249	NM_000125.3	590	Ggt/Agt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971208	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	79	108	0	ENST00000304494.5:c.151-1_151delinsAA		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971208	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	79	108	0	ENST00000304494.5:c.151-1_151delinsAA		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971208	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	79	108	0	ENST00000304494.5:c.151-1_151delinsAA		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610581	81610581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	316	491	1	ENST00000298171.2:c.2179G>A	p.Glu727Lys	p.E727K	ENST00000298171	NM_000369.2	727	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88428957	88428957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	249	553	0	ENST00000360948.2:c.2143C>T	p.Pro715Ser	p.P715S	ENST00000360948	NM_001012338.2	715	Cca/Tca																																																																														
BLM	641	MSKCC	GRCh37	15	91312713	91312713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	666	583	0	ENST00000355112.3:c.2452C>T	p.Arg818Cys	p.R818C	ENST00000355112	NM_000057.2	818	Cgc/Tgc																																																																														
NF1	4763	MSKCC	GRCh37	17	29528489	29528489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	289	637	0	ENST00000358273.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000358273	NM_001042492.2	416	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29663730	29663730	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	585	547	0	ENST00000358273.4:c.6225G>A	p.Trp2075Ter	p.W2075*	ENST00000358273	NM_001042492.2	2075	tgG/tgA																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234556	41234556	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	530	515	0	ENST00000357654.3:c.4222C>T	p.Gln1408Ter	p.Q1408*	ENST00000357654	NM_007294.3	1408	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827922	40827922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	263	503	1	ENST00000373198.4:c.2506G>A	p.Asp836Asn	p.D836N	ENST00000373198	NM_133170.3	836	Gat/Aat																																																																														
ATRX	546	MSKCC	GRCh37	X	76891508	76891508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	445	365	0	ENST00000373344.5:c.4597A>G	p.Ile1533Val	p.I1533V	ENST00000373344	NM_000489.3	1533	Ata/Gta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	41	287	0				ENST00000310581	NM_198253.2																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118374921	118374921	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	40	899	0	ENST00000534358.1:c.8314A>G	p.Lys2772Glu	p.K2772E	ENST00000534358	NM_005933.3	2772	Aag/Gag																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374979	45374980	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	TAC			P-0010388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	12	605	0	ENST00000262160.6:c.863_864insGTA	p.Glu288_Thr289insTer	p.E288_T289ins*	ENST00000262160	NM_005901.5	288	gaa/gaGTAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	100	310	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	128	233	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	66	89	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	66	89	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	295	417	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807889	1807889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	215	370	0	ENST00000260795.2:c.1948A>G	p.Lys650Glu	p.K650E	ENST00000260795		650	Aag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	324	456	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	110	132	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298764	15298764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	273	361	1	ENST00000263388.2:c.1534G>A	p.Ala512Thr	p.A512T	ENST00000263388	NM_000435.2	512	Gcc/Acc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	188	291	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416497	49416497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	321	406	0	ENST00000301067.7:c.16214G>A	p.Arg5405His	p.R5405H	ENST00000301067	NM_003482.3	5405	cGt/cAt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	448	772	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636818	8636818	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146973770		P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	291	443	0	ENST00000356435.5:c.91G>A	p.Val31Ile	p.V31I	ENST00000356435		31	Gtt/Att																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1448	592	1109	4	ENST00000301030.4:c.4382_4384delAGA	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069154	5069154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	138	428	1	ENST00000381652.3:c.1459C>T	p.Arg487Cys	p.R487C	ENST00000381652	NM_004972.3	487	Cgc/Tgc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132861	64132861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	211	593	3	ENST00000334205.4:c.995C>T	p.Ala332Val	p.A332V	ENST00000334205	NM_003942.2	332	gCg/gTg																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494650	2494650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	237	426	1	ENST00000355716.4:c.790G>A	p.Val264Ile	p.V264I	ENST00000355716	NM_003820.2	264	Gtc/Atc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	79	262	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693919	47693919	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	160	603	0	ENST00000233146.2:c.1633C>T	p.Gln545Ter	p.Q545*	ENST00000233146	NM_000251.2	545	Cag/Tag																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363490	40363490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	308	415	0	ENST00000397332.2:c.739C>G	p.Arg247Gly	p.R247G	ENST00000397332	NM_001033082.2	247	Cgt/Ggt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45796900	45796900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	241	404	0	ENST00000372115.3:c.1388C>T	p.Thr463Met	p.T463M	ENST00000372115	NM_001048171.1	463	aCg/aTg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78426104	78426104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	155	442	0	ENST00000370768.2:c.1421C>A	p.Pro474His	p.P474H	ENST00000370768	NM_003902.3	474	cCt/cAt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120461130	120461130	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	178	306	0	ENST00000256646.2:c.5828A>G	p.Asp1943Gly	p.D1943G	ENST00000256646	NM_024408.3	1943	gAt/gGt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849917	156849917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	208	384	0	ENST00000524377.1:c.2173A>G	p.Lys725Glu	p.K725E	ENST00000524377	NM_002529.3	725	Aag/Gag																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175958588	175958588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	180	429	0	ENST00000367669.3:c.1757G>A	p.Arg586His	p.R586H	ENST00000367669	NM_022457.5	586	cGt/cAt																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612818	228612818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	663	848	0	ENST00000366696.1:c.209G>A	p.Arg70Gln	p.R70Q	ENST00000366696	NM_003493.2	70	cGg/cAg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693913	47693913	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	175	606	0	ENST00000233146.2:c.1627G>T	p.Asp543Tyr	p.D543Y	ENST00000233146	NM_000251.2	543	Gat/Tat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198260807	198260807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	97	367	0	ENST00000335508.6:c.3512C>T	p.Pro1171Leu	p.P1171L	ENST00000335508	NM_012433.2	1171	cCg/cTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47155453	47155453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	204	447	0	ENST00000409792.3:c.4628G>A	p.Arg1543Gln	p.R1543Q	ENST00000409792	NM_014159.6	1543	cGg/cAg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138375112	138375112	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138462760		P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	294	281	0	ENST00000289153.2:c.2947C>T	p.Arg983Cys	p.R983C	ENST00000289153	NM_006219.2	983	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539177	187539177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	225	441	0	ENST00000441802.2:c.8563G>T	p.Glu2855Ter	p.E2855*	ENST00000441802	NM_005245.3	2855	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542357	187542357	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	158	393	0	ENST00000441802.2:c.5383C>T	p.Arg1795Ter	p.R1795*	ENST00000441802	NM_005245.3	1795	Cga/Tga																																																																														
RAD50	10111	MSKCC	GRCh37	5	131953827	131953827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	161	406	0	ENST00000265335.6:c.3230G>A	p.Arg1077Gln	p.R1077Q	ENST00000265335		1077	cGa/cAa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149457730	149457730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	241	411	0	ENST00000286301.3:c.674C>T	p.Ser225Leu	p.S225L	ENST00000286301	NM_005211.3	225	tCa/tTa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149516594	149516594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150173975		P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	275	340	1	ENST00000261799.4:c.17C>T	p.Ala6Val	p.A6V	ENST00000261799	NM_002609.3	6	gCg/gTg																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839952	27839952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1296	298	1053	2	ENST00000328488.2:c.142G>A	p.Ala48Thr	p.A48T	ENST00000328488	NM_003533.2	48	Gcc/Acc																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839979	27839979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	263	924	0	ENST00000328488.2:c.115C>T	p.Pro39Ser	p.P39S	ENST00000328488	NM_003533.2	39	Ccc/Tcc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004255	150004255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	258	690	0	ENST00000253339.5:c.1970G>A	p.Arg657His	p.R657H	ENST00000253339		657	cGt/cAt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004463	150004463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	182	587	0	ENST00000253339.5:c.1762C>T	p.Pro588Ser	p.P588S	ENST00000253339		588	Ccc/Tcc																																																																														
MYC	4609	MSKCC	GRCh37	8	128753187	128753187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	143	221	1	ENST00000377970.2:c.1348C>T	p.Arg450Trp	p.R450W	ENST00000377970	NM_002467.4	450	Cgg/Tgg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742477	145742477	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	80	336	0	ENST00000428558.2:c.311A>T	p.Asp104Val	p.D104V	ENST00000428558	NM_004260.3	104	gAc/gTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393659	139393659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	227	340	1	ENST00000277541.6:c.5987C>T	p.Thr1996Met	p.T1996M	ENST00000277541	NM_017617.3	1996	aCg/aTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395129	139395129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	384	527	0	ENST00000277541.6:c.5809C>T	p.Arg1937Cys	p.R1937C	ENST00000277541	NM_017617.3	1937	Cgc/Tgc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814803	139814803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1253	290	782	0	ENST00000247668.2:c.796T>C	p.Ser266Pro	p.S266P	ENST00000247668	NM_021138.3	266	Tca/Cca																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88635834	88635834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	165	524	0	ENST00000372037.3:c.59G>A	p.Arg20His	p.R20H	ENST00000372037	NM_004329.2	20	cGt/cAt																																																																														
WT1	7490	MSKCC	GRCh37	11	32417913	32417913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147241955		P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	137	371	0	ENST00000332351.3:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000332351	NM_024426.4	380	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446070	49446070	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201512665		P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	406	607	3	ENST00000301067.7:c.1396C>T	p.Arg466Cys	p.R466C	ENST00000301067	NM_003482.3	466	Cgc/Tgc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50481161	50481161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	300	484	1	ENST00000394963.4:c.547C>T	p.Arg183Ter	p.R183*	ENST00000394963	NM_003076.4	183	Cga/Tga																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856400	111856400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	59	124	2	ENST00000341259.2:c.451G>A	p.Ala151Thr	p.A151T	ENST00000341259	NM_005475.2	151	Gcc/Acc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112536	115112536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	227	367	0	ENST00000257566.3:c.1204G>A	p.Glu402Lys	p.E402K	ENST00000257566	NM_016569.3	402	Gag/Aag																																																																														
RAD51	5888	MSKCC	GRCh37	15	41021807	41021807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	424	561	2	ENST00000267868.3:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000267868	NM_002875.4	250	cGg/cAg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457330	67457330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	244	516	0	ENST00000327367.4:c.304G>A	p.Glu102Lys	p.E102K	ENST00000327367	NM_005902.3	102	Gag/Aag																																																																														
IDH2	3418	MSKCC	GRCh37	15	90634846	90634846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	280	333	0	ENST00000330062.3:c.146C>T	p.Pro49Leu	p.P49L	ENST00000330062	NM_002168.2	49	cCc/cTc																																																																														
CDH1	999	MSKCC	GRCh37	16	68842747	68842747	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	261	511	0	ENST00000261769.5:c.683A>G	p.Tyr228Cys	p.Y228C	ENST00000261769	NM_004360.3	228	tAc/tGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984651	72984651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	534	790	1	ENST00000268489.5:c.2933C>T	p.Ala978Val	p.A978V	ENST00000268489	NM_006885.3	978	gCg/gTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271870	15271870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	93	168	1	ENST00000263388.2:c.6569C>T	p.Ala2190Val	p.A2190V	ENST00000263388	NM_000435.2	2190	gCg/gTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855529	45855529	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141808167		P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	366	539	0	ENST00000391945.4:c.2128G>A	p.Val710Met	p.V710M	ENST00000391945	NM_000400.3	710	Gtg/Atg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906838	50906838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	404	678	2	ENST00000440232.2:c.1226G>A	p.Arg409Gln	p.R409Q	ENST00000440232	NM_002691.3	409	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919915	50919915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	362	566	2	ENST00000440232.2:c.3002G>A	p.Gly1001Asp	p.G1001D	ENST00000440232	NM_002691.3	1001	gGc/gAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022377	31022377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	99	237	0	ENST00000375687.4:c.1862C>T	p.Ala621Val	p.A621V	ENST00000375687	NM_015338.5	621	gCt/gTt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023343	31023343	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	172	303	0	ENST00000375687.4:c.2828A>T	p.Asp943Val	p.D943V	ENST00000375687	NM_015338.5	943	gAt/gTt																																																																														
EP300	2033	MSKCC	GRCh37	22	41574866	41574866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	200	364	0	ENST00000263253.7:c.7151A>G	p.Asn2384Ser	p.N2384S	ENST00000263253	NM_001429.3	2384	aAc/aGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030479	47030479	+	intron_variant	Intron	SNP	G	G	A	rs139829599		P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	349	527	2	ENST00000329236.7:c.201+1582G>A		p.*67*	ENST00000329236	NM_001204466.1																																																																																
RBM10	8241	MSKCC	GRCh37	X	47045133	47045133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	275	570	0	ENST00000329236.7:c.2140C>T	p.Arg714Trp	p.R714W	ENST00000329236	NM_001204466.1	714	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76764047	76764047	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	365	719	1	ENST00000373344.5:c.7261C>T	p.Gln2421Ter	p.Q2421*	ENST00000373344	NM_000489.3	2421	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108196255	108196256	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	130	302	0	ENST00000278616.4:c.6794dup	p.Lys2266GlnfsTer7	p.K2266Qfs*7	ENST00000278616	NM_000051.3	2264	act/acTt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	368	745	2	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
YES1	7525	MSKCC	GRCh37	18	745962	745963	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	46	404	0	ENST00000314574.4:c.559_560delAG	p.Ser187Ter	p.S187*	ENST00000314574	NM_005433.3	187	AGt/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7572991	7572991	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	367	667	2	ENST00000269305.4:c.1118delA	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	373	aAg/ag																																																																														
APC	324	MSKCC	GRCh37	5	112174413	112174414	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	89	294	0	ENST00000257430.4:c.3123_3124del	p.Pro1043PhefsTer4	p.P1043Ffs*4	ENST00000257430	NM_000038.5	1041	cAA/c																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401764	139401765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	290	430	0	ENST00000277541.6:c.3635dup	p.Thr1213HisfsTer7	p.T1213Hfs*7	ENST00000277541	NM_017617.3	1212	ggc/ggGc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47672796	47672796	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	139	460	0	ENST00000233146.2:c.1386+1del		p.Q462fs	ENST00000233146	NM_000251.2	462	caG/ca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620706	52620707	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	G			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	58	170	0	ENST00000394830.3:c.3049-3dupC		p.X1017_splice	ENST00000394830	NM_018313.4	1017																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53224522	53224523	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0010420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	417	735	0	ENST00000375401.3:c.3190_3191delinsAA	p.Gly1064Lys	p.G1064K	ENST00000375401	NM_004187.3	1064	GGg/AAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	117	289	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	80	228	0				ENST00000310581	NM_198253.2																																																																																
ERCC4	2072	MSKCC	GRCh37	16	14015913	14015913	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	93	244	0	ENST00000311895.7:c.233T>C	p.Ile78Thr	p.I78T	ENST00000311895	NM_005236.2	78	aTa/aCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	51	150	0				ENST00000310581	NM_198253.2																																																																																
STAG2	10735	MSKCC	GRCh37	X	123220428	123220428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	259	360	1	ENST00000218089.9:c.3085C>T	p.Gln1029Ter	p.Q1029*	ENST00000218089	NM_001042749.1	1029	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	126	380	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	129	96	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	129	96	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	129	96	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265579	198265579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	255	463	0	ENST00000335508.6:c.2578G>A	p.Glu860Lys	p.E860K	ENST00000335508	NM_012433.2	860	Gaa/Aaa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075194	16075194	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	85	315	0	ENST00000268712.3:c.358C>T	p.Gln120Ter	p.Q120*	ENST00000268712	NM_006311.3	120	Cag/Tag																																																																														
PARP1	142	MSKCC	GRCh37	1	226589926	226589926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	68	200	0	ENST00000366794.5:c.275G>A	p.Gly92Glu	p.G92E	ENST00000366794	NM_001618.3	92	gGa/gAa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40500444	40500444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	125	671	3	ENST00000264657.5:c.91C>T	p.Arg31Trp	p.R31W	ENST00000264657	NM_139276.2	31	Cgg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918553	44918553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	306	310	0	ENST00000377967.4:c.1036C>T	p.Gln346Ter	p.Q346*	ENST00000377967	NM_021140.2	346	Caa/Taa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46724370	46724370	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138566817		P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	159	778	0	ENST00000371975.4:c.223C>T	p.Arg75Ter	p.R75*	ENST00000371975	NM_003579.3	75	Cga/Tga																																																																														
IL10	3586	MSKCC	GRCh37	1	206944335	206944335	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	97	464	0	ENST00000423557.1:c.295G>T	p.Glu99Ter	p.E99*	ENST00000423557	NM_000572.2	99	Gag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	30143185	30143185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	72	149	0	ENST00000389048.3:c.341C>T	p.Ser114Leu	p.S114L	ENST00000389048	NM_004304.4	114	tCa/tTa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183655	10183655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	78	505	0	ENST00000256474.2:c.124G>A	p.Glu42Lys	p.E42K	ENST00000256474	NM_000551.3	42	Gag/Aag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935554	49935554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	264	973	0	ENST00000296474.3:c.1810G>A	p.Glu604Lys	p.E604K	ENST00000296474	NM_002447.2	604	Gag/Aag																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799631	72799631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	220	483	0	ENST00000325599.8:c.1538C>T	p.Thr513Ile	p.T513I	ENST00000325599	NM_018130.2	513	aCa/aTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540140	187540140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	94	581	0	ENST00000441802.2:c.7600G>C	p.Asp2534His	p.D2534H	ENST00000441802	NM_005245.3	2534	Gac/Cac																																																																														
FLT1	2321	MSKCC	GRCh37	13	28891642	28891642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	127	476	0	ENST00000282397.4:c.3379C>T	p.Pro1127Ser	p.P1127S	ENST00000282397	NM_002019.4	1127	Cct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29560130	29560130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	88	389	0	ENST00000358273.4:c.3607G>A	p.Asp1203Asn	p.D1203N	ENST00000358273	NM_001042492.2	1203	Gat/Aat																																																																														
STAT3	6774	MSKCC	GRCh37	17	40497663	40497663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	102	622	0	ENST00000264657.5:c.286G>C	p.Glu96Gln	p.E96Q	ENST00000264657	NM_139276.2	96	Gag/Cag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40497671	40497671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	95	594	0	ENST00000264657.5:c.278G>A	p.Arg93Lys	p.R93K	ENST00000264657	NM_139276.2	93	aGg/aAg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45858949	45858949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	45	400	0	ENST00000391945.4:c.1517C>T	p.Ser506Phe	p.S506F	ENST00000391945	NM_000400.3	506	tCc/tTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867698	45867698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	119	502	0	ENST00000391945.4:c.702C>A	p.Asp234Glu	p.D234E	ENST00000391945	NM_000400.3	234	gaC/gaA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44879955	44879955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	225	377	0	ENST00000377967.4:c.544G>A	p.Asp182Asn	p.D182N	ENST00000377967	NM_021140.2	182	Gac/Aac																																																																														
ATRX	546	MSKCC	GRCh37	X	76919028	76919029	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010496-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	208	367	0	ENST00000373344.5:c.3962dup	p.Asn1321LysfsTer3	p.N1321Kfs*3	ENST00000373344	NM_000489.3	1321	aat/aaAt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545585	106545585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	122	287	0	ENST00000359195.3:c.3062G>A	p.Arg1021His	p.R1021H	ENST00000359195	NM_002649.2	1021	cGt/cAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	152	374	2	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	97	244	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	170	496	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112177049	112177049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	131	418	0	ENST00000257430.4:c.5758C>T	p.Arg1920Ter	p.R1920*	ENST00000257430	NM_000038.5	1920	Cga/Tga																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748309	41748309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	101	319	0	ENST00000226382.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000226382	NM_003924.3	154	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295253	1295253	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	84	336	0				ENST00000310581	NM_198253.2																																																																																
MSH6	2956	MSKCC	GRCh37	2	48027541	48027541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	115	246	0	ENST00000234420.5:c.2419G>A	p.Glu807Lys	p.E807K	ENST00000234420	NM_000179.2	807	Gaa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142281802	142281802	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	155	346	0	ENST00000350721.4:c.442G>T	p.Glu148Ter	p.E148*	ENST00000350721	NM_001184.3	148	Gaa/Taa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20483060	20483060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	117	300	0	ENST00000346618.3:c.793G>A	p.Glu265Lys	p.E265K	ENST00000346618	NM_001949.4	265	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	106	282	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515141	103515141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	125	284	0	ENST00000355739.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000355739	NM_000123.3	548	Gaa/Aaa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99442819	99442819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	121	442	0	ENST00000268035.6:c.1216C>T	p.Arg406Cys	p.R406C	ENST00000268035	NM_000875.3	406	Cgc/Tgc																																																																														
ATR	545	MSKCC	GRCh37	3	142281952	142281952	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	58	128	0	ENST00000350721.4:c.293-1G>T		p.X98_splice	ENST00000350721	NM_001184.3	98																																																																															
REL	5966	MSKCC	GRCh37	2	61149129	61149129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144119768		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	84	406	0	ENST00000295025.8:c.1319C>T	p.Ser440Leu	p.S440L	ENST00000295025	NM_002908.2	440	tCg/tTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772842	135772842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1113	195	513	0	ENST00000298552.3:c.2781G>T	p.Lys927Asn	p.K927N	ENST00000298552	NM_001162426.1	927	aaG/aaT																																																																														
ATR	545	MSKCC	GRCh37	3	142178199	142178199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	95	319	0	ENST00000350721.4:c.7219C>T	p.Arg2407Cys	p.R2407C	ENST00000350721	NM_001184.3	2407	Cgc/Tgc																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945093	31945093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	154	503	0	ENST00000340398.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000340398	NM_001013699.2	3	cGa/cAa																																																																														
YES1	7525	MSKCC	GRCh37	18	751726	751726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	109	340	0	ENST00000314574.4:c.350G>T	p.Arg117Ile	p.R117I	ENST00000314574	NM_005433.3	117	aGa/aTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517847	187517847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202133523		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	171	459	1	ENST00000441802.2:c.12847G>A	p.Glu4283Lys	p.E4283K	ENST00000441802	NM_005245.3	4283	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893668	28893668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	71	207	0	ENST00000282397.4:c.3178C>T	p.Arg1060Ter	p.R1060*	ENST00000282397	NM_002019.4	1060	Cga/Tga																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417901	138417901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	122	287	0	ENST00000289153.2:c.1618G>T	p.Glu540Ter	p.E540*	ENST00000289153	NM_006219.2	540	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380289	25380289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	124	297	0	ENST00000256078.4:c.169G>A	p.Asp57Asn	p.D57N	ENST00000256078	NM_033360.2	57	Gac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	107	348	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950648	38950648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776074870		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	178	553	3	ENST00000357387.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000357387	NM_152756.3	1101	tCg/tTg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	200	465	1	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108198396	108198396	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	106	298	0	ENST00000278616.4:c.7000T>G	p.Tyr2334Asp	p.Y2334D	ENST00000278616	NM_000051.3	2334	Tac/Gac																																																																														
MPL	4352	MSKCC	GRCh37	1	43812205	43812205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	159	436	1	ENST00000372470.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000372470	NM_005373.2	357	cGa/cAa																																																																														
MPL	4352	MSKCC	GRCh37	1	43812585	43812585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	127	323	1	ENST00000372470.3:c.1288G>A	p.Glu430Lys	p.E430K	ENST00000372470	NM_005373.2	430	Gaa/Aaa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459064	120459064	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	80	373	0	ENST00000256646.2:c.6281T>G	p.Leu2094Arg	p.L2094R	ENST00000256646	NM_024408.3	2094	cTg/cGg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843506	156843506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	43	365	0	ENST00000524377.1:c.932C>T	p.Pro311Leu	p.P311L	ENST00000524377	NM_002529.3	311	cCg/cTg																																																																														
IL10	3586	MSKCC	GRCh37	1	206945644	206945644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	153	448	0	ENST00000423557.1:c.137A>G	p.Asp46Gly	p.D46G	ENST00000423557	NM_000572.2	46	gAt/gGt																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226253490	226253490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	223	404	0	ENST00000366813.1:c.262G>A	p.Ala88Thr	p.A88T	ENST00000366813		88	Gca/Aca																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967281	25967281	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	71	470	0	ENST00000435504.4:c.1925T>G	p.Phe642Cys	p.F642C	ENST00000435504		642	tTt/tGt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967318	25967318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	152	456	1	ENST00000435504.4:c.1888C>T	p.Pro630Ser	p.P630S	ENST00000435504		630	Ccg/Tcg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158630671	158630671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1363	91	570	0	ENST00000263640.3:c.572G>A	p.Gly191Glu	p.G191E	ENST00000263640	NM_001105.4	191	gGa/gAa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719551	190719551	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	113	312	0	ENST00000441310.2:c.1553T>G	p.Leu518Ter	p.L518*	ENST00000441310	NM_000534.4	518	tTa/tGa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190742037	190742037	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	132	300	0	ENST00000441310.2:c.2674T>G	p.Leu892Val	p.L892V	ENST00000441310	NM_000534.4	892	Tta/Gta																																																																														
VHL	7428	MSKCC	GRCh37	3	10191638	10191638	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	103	268	0	ENST00000256474.2:c.631A>G	p.Met211Val	p.M211V	ENST00000256474	NM_000551.3	211	Atg/Gtg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090474	37090474	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	82	285	0	ENST00000231790.2:c.2069A>G	p.Tyr690Cys	p.Y690C	ENST00000231790	NM_000249.3	690	tAc/tGc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125569	47125569	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	176	457	0	ENST00000409792.3:c.5701G>T	p.Glu1901Ter	p.E1901*	ENST00000409792	NM_014159.6	1901	Gaa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163588	47163588	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	87	261	0	ENST00000409792.3:c.2538A>C	p.Lys846Asn	p.K846N	ENST00000409792	NM_014159.6	846	aaA/aaC																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702662	52702662	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	67	193	0	ENST00000394830.3:c.237-1G>T		p.X79_splice	ENST00000394830	NM_018313.4	79																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202732	128202732	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	92	350	1	ENST00000341105.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000341105	NM_032638.4	330	Cga/Tga																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433485	138433485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	105	311	0	ENST00000289153.2:c.1127A>C	p.Lys376Thr	p.K376T	ENST00000289153	NM_006219.2	376	aAa/aCa																																																																														
ATR	545	MSKCC	GRCh37	3	142261519	142261519	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	115	258	0	ENST00000350721.4:c.3438A>C	p.Glu1146Asp	p.E1146D	ENST00000350721	NM_001184.3	1146	gaA/gaC																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55140704	55140704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	122	359	0	ENST00000257290.5:c.1565G>A	p.Arg522His	p.R522H	ENST00000257290	NM_006206.4	522	cGt/cAt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156491	55156491	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	104	346	0	ENST00000257290.5:c.2892A>C	p.Lys964Asn	p.K964N	ENST00000257290	NM_006206.4	964	aaA/aaC																																																																														
KDR	3791	MSKCC	GRCh37	4	55956184	55956184	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	124	427	0	ENST00000263923.4:c.3131T>C	p.Ile1044Thr	p.I1044T	ENST00000263923	NM_002253.2	1044	aTc/aCc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467866	66467866	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56375573		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	95	373	3	ENST00000273854.3:c.403C>T	p.Arg135Trp	p.R135W	ENST00000273854	NM_004439.5	135	Cgg/Tgg																																																																														
TET2	54790	MSKCC	GRCh37	4	106196497	106196497	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	129	366	0	ENST00000380013.4:c.4830T>G	p.Asn1610Lys	p.N1610K	ENST00000380013	NM_001127208.2	1610	aaT/aaG																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143094843	143094843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	78	482	0	ENST00000262992.4:c.1301C>A	p.Ser434Tyr	p.S434Y	ENST00000262992	NM_001101669.1	434	tCt/tAt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143129648	143129648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	143	397	0	ENST00000262992.4:c.1002G>T	p.Glu334Asp	p.E334D	ENST00000262992	NM_001101669.1	334	gaG/gaT																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253762	153253762	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	40	236	0	ENST00000281708.4:c.971A>C	p.Lys324Thr	p.K324T	ENST00000281708	NM_033632.3	324	aAa/aCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541982	187541982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	132	350	0	ENST00000441802.2:c.5758G>A	p.Glu1920Lys	p.E1920K	ENST00000441802	NM_005245.3	1920	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542896	187542896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	127	296	0	ENST00000441802.2:c.4844T>C	p.Val1615Ala	p.V1615A	ENST00000441802	NM_005245.3	1615	gTc/gCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627960	187627960	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	176	436	0	ENST00000441802.2:c.3022A>C	p.Lys1008Gln	p.K1008Q	ENST00000441802	NM_005245.3	1008	Aag/Cag																																																																														
SDHA	6389	MSKCC	GRCh37	5	226103	226103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	84	252	1	ENST00000264932.6:c.562C>T	p.Arg188Trp	p.R188W	ENST00000264932	NM_004168.2	188	Cgg/Tgg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576462	67576462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	172	375	0	ENST00000274335.5:c.741C>A	p.Phe247Leu	p.F247L	ENST00000274335		247	ttC/ttA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	96	260	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670009	86670009	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	77	280	0	ENST00000274376.6:c.1806A>C	p.Glu602Asp	p.E602D	ENST00000274376	NM_002890.2	602	gaA/gaC																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672759	86672759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	125	331	0	ENST00000274376.6:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000274376	NM_002890.2	749	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685312	86685312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	90	163	0	ENST00000274376.6:c.3028C>T	p.Arg1010Ter	p.R1010*	ENST00000274376	NM_002890.2	1010	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174878	112174878	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	120	288	0	ENST00000257430.4:c.3587C>A	p.Ser1196Ter	p.S1196*	ENST00000257430	NM_000038.5	1196	tCa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112176843	112176843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	100	473	1	ENST00000257430.4:c.5552G>A	p.Gly1851Glu	p.G1851E	ENST00000257430	NM_000038.5	1851	gGa/gAa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931456	131931456	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	108	289	0	ENST00000265335.6:c.2161A>C	p.Lys721Gln	p.K721Q	ENST00000265335		721	Aaa/Caa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131977992	131977992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	134	365	0	ENST00000265335.6:c.3875A>G	p.Asn1292Ser	p.N1292S	ENST00000265335		1292	aAc/aGc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149434869	149434869	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	155	460	0	ENST00000286301.3:c.2585A>G	p.Asn862Ser	p.N862S	ENST00000286301	NM_005211.3	862	aAc/aGc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495496	149495496	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	198	631	1	ENST00000261799.4:c.3151G>T	p.Glu1051Ter	p.E1051*	ENST00000261799	NM_002609.3	1051	Gaa/Taa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038451	180038451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	125	395	0	ENST00000261937.6:c.3566G>A	p.Arg1189His	p.R1189H	ENST00000261937	NM_182925.4	1189	cGc/cAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048632	180048632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	74	241	0	ENST00000261937.6:c.1930G>A	p.Ala644Thr	p.A644T	ENST00000261937	NM_182925.4	644	Gcg/Acg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911140	29911140	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	130	337	0	ENST00000376809.5:c.439T>G	p.Tyr147Asp	p.Y147D	ENST00000376809	NM_002116.7	147	Tac/Gac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955110	93955110	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1167	158	648	1	ENST00000369303.4:c.2788G>T	p.Glu930Ter	p.E930*	ENST00000369303	NM_004440.3	930	Gaa/Taa																																																																														
FYN	2534	MSKCC	GRCh37	6	112017629	112017629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1339	234	695	0	ENST00000368678.4:c.884T>C	p.Ile295Thr	p.I295T	ENST00000368678		295	aTa/aCa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677889	117677889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	143	457	0	ENST00000368508.3:c.4044G>T	p.Glu1348Asp	p.E1348D	ENST00000368508	NM_002944.2	1348	gaG/gaT																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138197159	138197159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	130	393	0	ENST00000237289.4:c.661G>T	p.Gly221Cys	p.G221C	ENST00000237289	NM_001270507.1	221	Ggt/Tgt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163911	152163911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	124	398	0	ENST00000206249.3:c.632G>T	p.Arg211Ile	p.R211I	ENST00000206249	NM_000125.3	211	aGa/aTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100550	157100550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	98	339	2	ENST00000346085.5:c.1487G>T	p.Arg496Met	p.R496M	ENST00000346085	NM_020732.3	496	aGg/aTg																																																																														
PARK2	5071	MSKCC	GRCh37	6	161771199	161771199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	46	218	0	ENST00000366898.1:c.1330G>A	p.Glu444Lys	p.E444K	ENST00000366898	NM_004562.2	444	Gag/Aag																																																																														
PARK2	5071	MSKCC	GRCh37	6	162206867	162206867	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	53	329	0	ENST00000366898.1:c.808A>G	p.Thr270Ala	p.T270A	ENST00000366898	NM_004562.2	270	Aca/Gca																																																																														
PARK2	5071	MSKCC	GRCh37	6	162206879	162206879	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	52	312	0	ENST00000366898.1:c.796T>G	p.Leu266Val	p.L266V	ENST00000366898	NM_004562.2	266	Tta/Gta																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729551	41729551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1236	217	757	0	ENST00000242208.4:c.978C>A	p.Phe326Leu	p.F326L	ENST00000242208	NM_002192.2	326	ttC/ttA																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459493	50459493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	114	302	0	ENST00000331340.3:c.782C>A	p.Ser261Tyr	p.S261Y	ENST00000331340	NM_006060.4	261	tCt/tAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273279	55273279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201717672		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	111	209	0	ENST00000275493.2:c.3602C>T	p.Ala1201Val	p.A1201V	ENST00000275493	NM_005228.3	1201	gCg/gTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs759145490		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	111	339	1	ENST00000222390.5:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000222390	NM_000601.4	424	Cgt/Tgt																																																																														
HGF	3082	MSKCC	GRCh37	7	81388115	81388115	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	71	324	0	ENST00000222390.5:c.260T>G	p.Phe87Cys	p.F87C	ENST00000222390	NM_000601.4	87	tTt/tGt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508631	106508631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	44	228	0	ENST00000359195.3:c.625G>A	p.Glu209Lys	p.E209K	ENST00000359195	NM_002649.2	209	Gag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116340177	116340177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200074800		P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	123	316	1	ENST00000397752.3:c.1039G>A	p.Ala347Thr	p.A347T	ENST00000397752	NM_000245.2	347	Gca/Aca																																																																														
MET	4233	MSKCC	GRCh37	7	116403290	116403290	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	178	458	0	ENST00000397752.3:c.2551T>C	p.Ser851Pro	p.S851P	ENST00000397752	NM_000245.2	851	Tca/Cca																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511095	148511095	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	89	197	0	ENST00000320356.2:c.1807A>C	p.Asn603His	p.N603H	ENST00000320356	NM_004456.4	603	Aat/Cat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132852	152132852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	84	279	0	ENST00000262189.6:c.20A>G	p.Lys7Arg	p.K7R	ENST00000262189	NM_170606.2	7	aAg/aGg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372550	55372550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	70	172	0	ENST00000297316.4:c.1240G>A	p.Val414Met	p.V414M	ENST00000297316	NM_022454.3	414	Gtg/Atg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739866	145739866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	128	464	2	ENST00000428558.2:c.1664C>T	p.Ser555Leu	p.S555L	ENST00000428558	NM_004260.3	555	tCg/tTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080561	5080561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	128	386	0	ENST00000381652.3:c.2312A>G	p.Gln771Arg	p.Q771R	ENST00000381652	NM_004972.3	771	cAg/cGg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98212216	98212216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	77	200	2	ENST00000331920.6:c.3456C>A	p.Phe1152Leu	p.F1152L	ENST00000331920	NM_000264.3	1152	ttC/ttA																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229458	98229458	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	157	517	0	ENST00000331920.6:c.2500T>G	p.Leu834Val	p.L834V	ENST00000331920	NM_000264.3	834	Ttg/Gtg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229682	98229682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	55	179	0	ENST00000331920.6:c.2276G>A	p.Gly759Asp	p.G759D	ENST00000331920	NM_000264.3	759	gGc/gAc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907037	101907037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	90	244	0	ENST00000374994.4:c.997G>T	p.Asp333Tyr	p.D333Y	ENST00000374994	NM_004612.2	333	Gat/Tat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781510	135781510	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	260	758	0	ENST00000298552.3:c.1455A>C	p.Glu485Asp	p.E485D	ENST00000298552	NM_001162426.1	485	gaA/gaC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	39	99	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274782	123274782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	155	383	1	ENST00000358487.5:c.1136C>A	p.Ala379Asp	p.A379D	ENST00000358487	NM_000141.4	379	gCc/gAc																																																																														
EED	8726	MSKCC	GRCh37	11	85989557	85989557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	145	400	0	ENST00000263360.6:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000263360	NM_003797.3	439	cGa/cAa																																																																														
EED	8726	MSKCC	GRCh37	11	85989563	85989563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	137	373	2	ENST00000263360.6:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000263360	NM_003797.3	441	cGa/cAa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201872	102201872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1463	234	728	1	ENST00000263464.3:c.1224G>T	p.Glu408Asp	p.E408D	ENST00000263464	NM_001165.4	408	gaG/gaT																																																																														
ATM	472	MSKCC	GRCh37	11	108106523	108106523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	120	284	0	ENST00000278616.4:c.458G>A	p.Arg153Lys	p.R153K	ENST00000278616	NM_000051.3	153	aGa/aAa																																																																														
ATM	472	MSKCC	GRCh37	11	108121669	108121669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	173	542	1	ENST00000278616.4:c.1477C>T	p.Arg493Cys	p.R493C	ENST00000278616	NM_000051.3	493	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108155088	108155088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	127	321	0	ENST00000278616.4:c.3881T>G	p.Ile1294Ser	p.I1294S	ENST00000278616	NM_000051.3	1294	aTt/aGt																																																																														
ATM	472	MSKCC	GRCh37	11	108202198	108202198	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	90	278	0	ENST00000278616.4:c.7543A>C	p.Lys2515Gln	p.K2515Q	ENST00000278616	NM_000051.3	2515	Aaa/Caa																																																																														
ATM	472	MSKCC	GRCh37	11	108202688	108202688	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	67	308	0	ENST00000278616.4:c.7712T>G	p.Phe2571Cys	p.F2571C	ENST00000278616	NM_000051.3	2571	tTt/tGt																																																																														
CBL	867	MSKCC	GRCh37	11	119142539	119142539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	157	399	1	ENST00000264033.4:c.538C>T	p.Arg180Trp	p.R180W	ENST00000264033	NM_005188.3	180	Cgg/Tgg																																																																														
CBL	867	MSKCC	GRCh37	11	119170272	119170272	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	119	333	0	ENST00000264033.4:c.2502A>C	p.Glu834Asp	p.E834D	ENST00000264033	NM_005188.3	834	gaA/gaC																																																																														
KDM5A	5927	MSKCC	GRCh37	12	406326	406326	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	153	399	0	ENST00000399788.2:c.4115A>C	p.Asn1372Thr	p.N1372T	ENST00000399788	NM_001042603.1	1372	aAt/aCt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419031	419031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	56	320	1	ENST00000399788.2:c.3316G>A	p.Asp1106Asn	p.D1106N	ENST00000399788	NM_001042603.1	1106	Gac/Aac																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18496264	18496264	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	72	288	0	ENST00000266497.5:c.1399T>G	p.Phe467Val	p.F467V	ENST00000266497		467	Ttt/Gtt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552634	18552634	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	143	511	0	ENST00000266497.5:c.2045T>C	p.Phe682Ser	p.F682S	ENST00000266497		682	tTc/tCc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230399	46230399	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	130	397	0	ENST00000334344.6:c.733G>T	p.Glu245Ter	p.E245*	ENST00000334344	NM_152641.2	245	Gaa/Taa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46298771	46298771	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	135	380	0	ENST00000334344.6:c.5418A>C	p.Glu1806Asp	p.E1806D	ENST00000334344	NM_152641.2	1806	gaA/gaC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435768	49435768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	153	357	0	ENST00000301067.7:c.6115T>C	p.Ser2039Pro	p.S2039P	ENST00000301067	NM_003482.3	2039	Tca/Cca																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865135	57865135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1516	313	763	0	ENST00000228682.2:c.2612A>G	p.Asp871Gly	p.D871G	ENST00000228682	NM_005269.2	871	gAt/gGt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865767	57865767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1226	238	657	0	ENST00000228682.2:c.3244A>G	p.Asn1082Asp	p.N1082D	ENST00000228682	NM_005269.2	1082	Aac/Gac																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112915793	112915793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	50	306	0	ENST00000351677.2:c.1066A>G	p.Thr356Ala	p.T356A	ENST00000351677	NM_002834.3	356	Aca/Gca																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	121	412	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26974624	26974624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	107	314	0	ENST00000381527.3:c.968G>A	p.Arg323Gln	p.R323Q	ENST00000381527	NM_001260.1	323	cGa/cAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964163	28964163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	115	387	0	ENST00000282397.4:c.1739A>G	p.Asn580Ser	p.N580S	ENST00000282397	NM_002019.4	580	aAc/aGc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913081	32913081	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1560	239	716	0	ENST00000380152.3:c.4589A>C	p.Lys1530Thr	p.K1530T	ENST00000380152		1530	aAa/aCa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95578514	95578514	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	90	248	0	ENST00000343455.3:c.2111A>C	p.Lys704Thr	p.K704T	ENST00000343455	NM_177438.2	704	aAa/aCa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961914	41961914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1411	249	674	0	ENST00000219905.7:c.822G>T	p.Lys274Asn	p.K274N	ENST00000219905	NM_001164273.1	274	aaG/aaT																																																																														
BLM	641	MSKCC	GRCh37	15	91308604	91308604	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1181	141	475	0	ENST00000355112.3:c.2153C>A	p.Ser718Ter	p.S718*	ENST00000355112	NM_000057.2	718	tCa/tAa																																																																														
BLM	641	MSKCC	GRCh37	15	91337508	91337508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	150	385	0	ENST00000355112.3:c.3131A>G	p.Tyr1044Cys	p.Y1044C	ENST00000355112	NM_000057.2	1044	tAc/tGc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3831292	3831292	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	121	319	0	ENST00000262367.5:c.1589A>G	p.Asn530Ser	p.N530S	ENST00000262367	NM_004380.2	530	aAc/aGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822708	72822708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1449	267	815	1	ENST00000268489.5:c.9467G>A	p.Ser3156Asn	p.S3156N	ENST00000268489	NM_006885.3	3156	aGc/aAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350096	89350096	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1286	229	738	0	ENST00000301030.4:c.2854A>C	p.Lys952Gln	p.K952Q	ENST00000301030	NM_001256183.1	952	Aag/Cag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351286	89351286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1488	275	768	0	ENST00000301030.4:c.1664C>A	p.Ser555Tyr	p.S555Y	ENST00000301030	NM_001256183.1	555	tCt/tAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89354962	89354962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1390	243	727	3	ENST00000301030.4:c.718G>A	p.Asp240Asn	p.D240N	ENST00000301030	NM_001256183.1	240	Gac/Aac																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961052	15961052	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	109	240	0	ENST00000268712.3:c.6169-1G>A		p.X2057_splice	ENST00000268712	NM_006311.3	2057																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15983990	15983990	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	164	341	0	ENST00000268712.3:c.3229G>T	p.Glu1077Ter	p.E1077*	ENST00000268712	NM_006311.3	1077	Gaa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012219	16012219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	114	254	0	ENST00000268712.3:c.2063G>A	p.Arg688Gln	p.R688Q	ENST00000268712	NM_006311.3	688	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29556062	29556062	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	89	199	0	ENST00000358273.4:c.2429A>G	p.Lys810Arg	p.K810R	ENST00000358273	NM_001042492.2	810	aAg/aGg																																																																														
NF1	4763	MSKCC	GRCh37	17	29701150	29701150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	76	301	0	ENST00000358273.4:c.8497A>G	p.Asn2833Asp	p.N2833D	ENST00000358273	NM_001042492.2	2833	Aat/Gat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866710	37866710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	112	302	0	ENST00000269571.5:c.877G>A	p.Ala293Thr	p.A293T	ENST00000269571		293	Gcc/Acc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78866640	78866640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	84	237	0	ENST00000306801.3:c.2213C>A	p.Ser738Tyr	p.S738Y	ENST00000306801	NM_020761.2	738	tCt/tAt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39575856	39575856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	63	213	2	ENST00000262039.4:c.789G>T	p.Glu263Asp	p.E263D	ENST00000262039	NM_002647.2	263	gaG/gaT																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117512	4117512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	35	164	1	ENST00000262948.5:c.208G>A	p.Asp70Asn	p.D70N	ENST00000262948	NM_030662.3	70	Gat/Aat																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208357	5208357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	121	402	0	ENST00000357368.4:c.5533C>T	p.Pro1845Ser	p.P1845S	ENST00000357368	NM_002850.3	1845	Ccg/Tcg																																																																														
INSR	3643	MSKCC	GRCh37	19	7172404	7172404	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	125	391	0	ENST00000302850.5:c.1165G>T	p.Glu389Ter	p.E389*	ENST00000302850	NM_000208.2	389	Gaa/Taa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375108	31375108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	76	267	0	ENST00000328111.2:c.505G>A	p.Asp169Asn	p.D169N	ENST00000328111	NM_006892.3	169	Gac/Aac																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31394046	31394046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	92	266	0	ENST00000328111.2:c.2333C>T	p.Ser778Leu	p.S778L	ENST00000328111	NM_006892.3	778	tCg/tTg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39725922	39725922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	66	226	0	ENST00000361337.2:c.793G>A	p.Asp265Asn	p.D265N	ENST00000361337	NM_003286.2	265	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747132	40747132	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	94	268	1	ENST00000373198.4:c.2950C>T	p.Gln984Ter	p.Q984*	ENST00000373198	NM_133170.3	984	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944523	40944523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	103	369	0	ENST00000373198.4:c.1979C>A	p.Ser660Tyr	p.S660Y	ENST00000373198	NM_133170.3	660	tCt/tAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44515623	44515623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	64	374	0	ENST00000291552.4:c.273G>T	p.Glu91Asp	p.E91D	ENST00000291552	NM_006758.2	91	gaG/gaT																																																																														
EP300	2033	MSKCC	GRCh37	22	41565543	41565543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	189	461	0	ENST00000263253.7:c.4209C>A	p.Phe1403Leu	p.F1403L	ENST00000263253	NM_001429.3	1403	ttC/ttA																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921639	39921639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	150	172	0	ENST00000378444.4:c.4181T>C	p.Val1394Ala	p.V1394A	ENST00000378444	NM_001123385.1	1394	gTc/gCc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39935784	39935784	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	207	250	0	ENST00000378444.4:c.88A>G	p.Lys30Glu	p.K30E	ENST00000378444	NM_001123385.1	30	Aaa/Gaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76875925	76875925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	176	269	2	ENST00000373344.5:c.5210C>A	p.Ser1737Tyr	p.S1737Y	ENST00000373344	NM_000489.3	1737	tCt/tAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906535	32906536	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	114	423	0	ENST00000380152.3:c.925dup	p.Ser309PhefsTer6	p.S309Ffs*6	ENST00000380152		307	agt/agTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	87	164	1				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	121	491	2	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	112	438	1	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060925	38060925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	51	277	0	ENST00000250448.2:c.1064C>T	p.Ser355Leu	p.S355L	ENST00000250448	NM_004496.3	355	tCa/tTa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703632	47703632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138465383		P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	110	597	0	ENST00000233146.2:c.2132G>A	p.Arg711Gln	p.R711Q	ENST00000233146	NM_000251.2	711	cGa/cAa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441477	52441477	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	149	350	0	ENST00000460680.1:c.376-1G>A		p.X126_splice	ENST00000460680	NM_004656.3	126																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101186	27101186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	140	349	0	ENST00000324856.7:c.4468G>A	p.Glu1490Lys	p.E1490K	ENST00000324856	NM_006015.4	1490	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29685536	29685536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	118	391	0	ENST00000358273.4:c.8009C>A	p.Ser2670Ter	p.S2670*	ENST00000358273	NM_001042492.2	2670	tCa/tAa																																																																														
HIST2H3D	653604	MSKCC	GRCh37	1	149784830	149784830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	566	635	0	ENST00000331491.1:c.407C>T	p.Ala136Val	p.A136V	ENST00000331491	NM_001123375.2	136	gCc/gTc																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045930	26045930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	1127	1223	1	ENST00000540144.1:c.292G>A	p.Glu98Lys	p.E98K	ENST00000540144	NM_003531.2	98	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100384	27100384	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	175	397	0	ENST00000324856.7:c.4096C>T	p.Gln1366Ter	p.Q1366*	ENST00000324856	NM_006015.4	1366	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101181	27101181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	137	341	0	ENST00000324856.7:c.4463C>T	p.Ser1488Leu	p.S1488L	ENST00000324856	NM_006015.4	1488	tCa/tTa																																																																														
MCL1	4170	MSKCC	GRCh37	1	150550857	150550857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	219	249	0	ENST00000369026.2:c.799C>T	p.Leu267Phe	p.L267F	ENST00000369026	NM_021960.4	267	Ctc/Ttc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463248	25463248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	161	458	0	ENST00000264709.3:c.2245C>T	p.Arg749Cys	p.R749C	ENST00000264709	NM_175629.2	749	Cgc/Tgc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265468	198265468	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	220	531	0	ENST00000335508.6:c.2689C>G	p.Leu897Val	p.L897V	ENST00000335508	NM_012433.2	897	Ctt/Gtt																																																																														
KDR	3791	MSKCC	GRCh37	4	55987340	55987340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	99	354	0	ENST00000263923.4:c.85C>G	p.Leu29Val	p.L29V	ENST00000263923	NM_002253.2	29	Ctt/Gtt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495394	149495394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	180	435	0	ENST00000261799.4:c.3253G>A	p.Glu1085Lys	p.E1085K	ENST00000261799	NM_002609.3	1085	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401013	139401013	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	145	578	0	ENST00000277541.6:c.3980A>G	p.Asn1327Ser	p.N1327S	ENST00000277541	NM_017617.3	1327	aAc/aGc																																																																														
PGR	5241	MSKCC	GRCh37	11	100999192	100999192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	238	605	1	ENST00000325455.5:c.610C>A	p.His204Asn	p.H204N	ENST00000325455	NM_001202474.3	204	Cac/Aac																																																																														
ATM	472	MSKCC	GRCh37	11	108199839	108199839	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	244	432	0	ENST00000278616.4:c.7181C>G	p.Ser2394Ter	p.S2394*	ENST00000278616	NM_000051.3	2394	tCa/tGa																																																																														
POLE	5426	MSKCC	GRCh37	12	133253212	133253212	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	159	425	0	ENST00000320574.5:c.829G>C	p.Glu277Gln	p.E277Q	ENST00000320574	NM_006231.2	277	Gag/Cag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518174	103518174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	75	337	0	ENST00000355739.4:c.2112C>A	p.Asn704Lys	p.N704K	ENST00000355739	NM_000123.3	704	aaC/aaA																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422137	81422137	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	117	375	0	ENST00000298171.2:c.113G>C	p.Arg38Thr	p.R38T	ENST00000298171	NM_000369.2	38	aGa/aCa																																																																														
MGA	23269	MSKCC	GRCh37	15	41988785	41988785	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	157	1085	0	ENST00000219905.7:c.1577C>G	p.Ser526Ter	p.S526*	ENST00000219905	NM_001164273.1	526	tCa/tGa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99473513	99473513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	148	305	0	ENST00000268035.6:c.2935G>C	p.Glu979Gln	p.E979Q	ENST00000268035	NM_000875.3	979	Gag/Cag																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226298	2226298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	319	406	0	ENST00000326181.6:c.1911G>C	p.Gln637His	p.Q637H	ENST00000326181	NM_032271.2	637	caG/caC																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650719	67650719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	466	523	0	ENST00000264010.4:c.1024C>T	p.Arg342Cys	p.R342C	ENST00000264010	NM_006565.3	342	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828191	72828191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1403	193	1226	2	ENST00000268489.5:c.8390G>T	p.Arg2797Ile	p.R2797I	ENST00000268489	NM_006885.3	2797	aGa/aTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829005	72829005	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	1032	1326	1	ENST00000268489.5:c.7576C>T	p.Gln2526Ter	p.Q2526*	ENST00000268489	NM_006885.3	2526	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831165	72831165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	848	994	0	ENST00000268489.5:c.5416G>C	p.Glu1806Gln	p.E1806Q	ENST00000268489	NM_006885.3	1806	Gag/Cag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831659	72831659	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	690	947	0	ENST00000268489.5:c.4922A>G	p.Asn1641Ser	p.N1641S	ENST00000268489	NM_006885.3	1641	aAc/aGc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350674	89350674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	1083	1558	0	ENST00000301030.4:c.2276G>A	p.Arg759Lys	p.R759K	ENST00000301030	NM_001256183.1	759	aGa/aAa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89869695	89869695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	529	705	0	ENST00000389301.3:c.764G>A	p.Arg255Lys	p.R255K	ENST00000389301	NM_000135.2	255	aGa/aAa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761214	59761214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	212	738	1	ENST00000259008.2:c.3193G>A	p.Gly1065Arg	p.G1065R	ENST00000259008	NM_032043.2	1065	Gga/Aga																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2213956	2213956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	89	209	0	ENST00000398665.3:c.1768C>T	p.Arg590Cys	p.R590C	ENST00000398665	NM_032482.2	590	Cgc/Tgc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18274178	18274178	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	146	313	0	ENST00000222254.8:c.1396G>C	p.Glu466Gln	p.E466Q	ENST00000222254	NM_005027.3	466	Gag/Cag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44894227	44894227	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	167	625	1	ENST00000377967.4:c.616G>T	p.Glu206Ter	p.E206*	ENST00000377967	NM_021140.2	206	Gaa/Taa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410467	63410467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	137	673	0	ENST00000330258.3:c.2700G>T	p.Glu900Asp	p.E900D	ENST00000330258	NM_152424.3	900	gaG/gaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76776973	76776973	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	57	628	0	ENST00000373344.5:c.6979C>G	p.Leu2327Val	p.L2327V	ENST00000373344	NM_000489.3	2327	Ctc/Gtc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276289	15276301	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCATCCAAGT	CGGGCATCCAAGT	-			P-0010531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	138	362	0	ENST00000263388.2:c.5693_5705del	p.Asp1898AlafsTer9	p.D1898Afs*9	ENST00000263388	NM_000435.2	1898	gACTTGGATGCCCGc/gc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	100	332	0				ENST00000310581	NM_198253.2																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8499657	8499657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	143	410	0	ENST00000356435.5:c.2312C>T	p.Ala771Val	p.A771V	ENST00000356435		771	gCt/gTt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	159	473	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106822	27106822	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	192	443	1	ENST00000324856.7:c.6433G>T	p.Glu2145Ter	p.E2145*	ENST00000324856	NM_006015.4	2145	Gag/Tag																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056584	26056584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	134	197	0	ENST00000343677.2:c.73G>A	p.Ala25Thr	p.A25T	ENST00000343677	NM_005319.3	25	Gcc/Acc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55260477	55260477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	43	572	1	ENST00000275493.2:c.2644G>A	p.Ala882Thr	p.A882T	ENST00000275493	NM_005228.3	882	Gca/Aca																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258800	115258800	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0010754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	23	292	0	ENST00000369535.4:c.-17-2A>G		p.X6_splice	ENST00000369535	NM_002524.4	6																																																																															
GATA3	2625	MSKCC	GRCh37	10	8111503	8111509	+	frameshift_variant	Frame_Shift_Del	DEL	GGAATGC	GGAATGC	TG			P-0010754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	410	571	0	ENST00000346208.3:c.989_995delinsTG	p.Arg330MetfsTer20	p.R330Mfs*20	ENST00000346208		330	aGGAATGCc/aTGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	69	275	0				ENST00000310581	NM_198253.2																																																																																
TSHR	7253	MSKCC	GRCh37	14	81609916	81609916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	46	410	0	ENST00000298171.2:c.1514G>A	p.Ser505Asn	p.S505N	ENST00000298171	NM_000369.2	505	aGc/aAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733210	40733210	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0010762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	42	413	0	ENST00000373198.4:c.3596A>G	p.Gln1199Arg	p.Q1199R	ENST00000373198	NM_133170.3	1199	cAg/cGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	94	157	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	412	366	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056291	180056291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199942873		P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	259	487	0	ENST00000261937.6:c.953G>A	p.Arg318Gln	p.R318Q	ENST00000261937	NM_182925.4	318	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100312	27100312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	503	466	0	ENST00000324856.7:c.4024C>T	p.Gln1342Ter	p.Q1342*	ENST00000324856	NM_006015.4	1342	Cag/Tag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120497738	120497738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	165	310	0	ENST00000256646.2:c.2144C>T	p.Pro715Leu	p.P715L	ENST00000256646	NM_024408.3	715	cCc/cTc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12629107	12629107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	206	275	0	ENST00000251849.4:c.1400G>A	p.Arg467Lys	p.R467K	ENST00000251849	NM_002880.3	467	aGa/aAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266486	41266486	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	207	340	0	ENST00000349496.5:c.283C>G	p.Arg95Gly	p.R95G	ENST00000349496	NM_001904.3	95	Cga/Gga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739837	41739837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	238	549	0	ENST00000242208.4:c.136G>A	p.Asp46Asn	p.D46N	ENST00000242208	NM_002192.2	46	Gat/Aat																																																																														
SMO	6608	MSKCC	GRCh37	7	128846172	128846172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	255	514	0	ENST00000249373.3:c.1102C>T	p.Pro368Ser	p.P368S	ENST00000249373	NM_005631.4	368	Ccc/Tcc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101910005	101910005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	106	358	0	ENST00000374994.4:c.1325G>A	p.Arg442Lys	p.R442K	ENST00000374994	NM_004612.2	442	aGa/aAa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572171	64572171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	177	361	0	ENST00000337652.1:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000337652	NM_130803.2	495	Gag/Aag																																																																														
CCND1	595	MSKCC	GRCh37	11	69457939	69457939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	274	496	0	ENST00000227507.2:c.339G>A	p.Met113Ile	p.M113I	ENST00000227507	NM_053056.2	113	atG/atA																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514308	69514308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142959398		P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	179	386	0	ENST00000294312.3:c.373G>A	p.Glu125Lys	p.E125K	ENST00000294312	NM_005117.2	125	Gag/Aag																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518531	69518531	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	58	127	0	ENST00000294312.3:c.114G>A	p.Trp38Ter	p.W38*	ENST00000294312	NM_005117.2	38	tgG/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378633	25378633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	94	366	0	ENST00000256078.4:c.365C>T	p.Ser122Phe	p.S122F	ENST00000256078	NM_033360.2	122	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422997	49422997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	143	416	0	ENST00000301067.7:c.14098G>A	p.Asp4700Asn	p.D4700N	ENST00000301067	NM_003482.3	4700	Gat/Aat																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493661	56493661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	130	346	0	ENST00000267101.3:c.2977C>T	p.His993Tyr	p.H993Y	ENST00000267101	NM_001982.3	993	Cat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912750	32912750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1195	159	616	0	ENST00000380152.3:c.4258G>A	p.Asp1420Asn	p.D1420N	ENST00000380152		1420	Gat/Aat																																																																														
AXL	558	MSKCC	GRCh37	19	41744443	41744443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	238	546	0	ENST00000301178.4:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000301178	NM_021913.4	355	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860910	45860910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	85	506	1	ENST00000391945.4:c.1285G>A	p.Ala429Thr	p.A429T	ENST00000391945	NM_000400.3	429	Gcc/Acc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566453	41566453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	81	491	0	ENST00000263253.7:c.4330G>A	p.Asp1444Asn	p.D1444N	ENST00000263253	NM_001429.3	1444	Gat/Aat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47004912	47004912	+	intron_variant	Intron	SNP	G	G	T			P-0010841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	53	329	0	ENST00000329236.7:c.-126+28G>T		p.*42*	ENST00000329236	NM_001204466.1																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37880998	37880998	+	protein_altering_variant	In_Frame_Ins	INS	G	G	TTGT			P-0010841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	134	451	0	ENST00000269571.5:c.2327delinsTTGT	p.Gly776delinsValVal	p.G776delinsVV	ENST00000269571		776	gGt/gTTGTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			15	27	290	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	141	503	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
FH	2271	MSKCC	GRCh37	1	241671997	241671999	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0010900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	122	417	0	ENST00000366560.3:c.642_644del	p.Leu214_His215delinsPhe	p.L214_H215delinsF	ENST00000366560	NM_000143.3	214	ttACAt/ttt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	166	259	0				ENST00000310581	NM_198253.2																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134920412	134920412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	341	628	0	ENST00000398015.3:c.2227C>T	p.Arg743Trp	p.R743W	ENST00000398015	NM_004441.4	743	Cgg/Tgg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9547022	9547022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	74	150	0	ENST00000353224.5:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000353224	NM_177990.2	334	Gat/Aat																																																																														
WT1	7490	MSKCC	GRCh37	11	32413577	32413577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	223	422	0	ENST00000332351.3:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000332351	NM_024426.4	458	cGa/cAa																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612735	228612735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	577	1195	1	ENST00000366696.1:c.292G>A	p.Glu98Lys	p.E98K	ENST00000366696	NM_003493.2	98	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248786	212248786	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	59	216	0	ENST00000342788.4:c.3482-1G>A		p.X1161_splice	ENST00000342788	NM_005235.2	1161																																																																															
INHA	3623	MSKCC	GRCh37	2	220439974	220439974	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	470	951	0	ENST00000243786.2:c.827G>C	p.Trp276Ser	p.W276S	ENST00000243786	NM_002191.3	276	tGg/tCg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280013	66280013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	170	405	0	ENST00000273854.3:c.1676C>T	p.Thr559Ile	p.T559I	ENST00000273854	NM_004439.5	559	aCc/aTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140487372	140487372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	221	945	0	ENST00000288602.6:c.1153G>A	p.Asp385Asn	p.D385N	ENST00000288602	NM_004333.4	385	Gac/Aac																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435626	18435626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	75	395	0	ENST00000266497.5:c.611C>T	p.Ser204Phe	p.S204F	ENST00000266497		204	tCt/tTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435633	18435633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	74	382	0	ENST00000266497.5:c.618G>T	p.Met206Ile	p.M206I	ENST00000266497		206	atG/atT																																																																														
FLT1	2321	MSKCC	GRCh37	13	28908165	28908165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	261	564	0	ENST00000282397.4:c.2590A>G	p.Lys864Glu	p.K864E	ENST00000282397	NM_002019.4	864	Aaa/Gaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28963948	28963948	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	163	617	0	ENST00000282397.4:c.1954G>T	p.Glu652Ter	p.E652*	ENST00000282397	NM_002019.4	652	Gaa/Taa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347919	73347919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	84	381	0	ENST00000377767.4:c.1142C>T	p.Pro381Leu	p.P381L	ENST00000377767	NM_014953.3	381	cCt/cTt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479765	67479765	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	328	587	1	ENST00000327367.4:c.1072C>T	p.Gln358Ter	p.Q358*	ENST00000327367	NM_005902.3	358	Cag/Tag																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374408	31374408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	394	691	0	ENST00000328111.2:c.407C>A	p.Ser136Tyr	p.S136Y	ENST00000328111	NM_006892.3	136	tCc/tAc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866465	42866465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	422	915	1	ENST00000398585.3:c.167G>A	p.Gly56Glu	p.G56E	ENST00000398585	NM_001135099.1	56	gGa/gAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76776960	76776960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	157	728	0	ENST00000373344.5:c.6992G>A	p.Gly2331Glu	p.G2331E	ENST00000373344	NM_000489.3	2331	gGa/gAa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78435620	78435620	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	272	631	0	ENST00000370768.2:c.200del	p.Leu67Ter	p.L67*	ENST00000370768	NM_003902.3	67	tTa/ta																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481403	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0010915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	241	530	0	ENST00000288602.6:c.1405_1406delinsTC	p.Gly469Ser	p.G469S	ENST00000288602	NM_004333.4	469	GGa/TCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	190	439	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																														
POLE	5426	MSKCC	GRCh37	12	133248872	133248872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	53	389	0	ENST00000320574.5:c.1723G>A	p.Glu575Lys	p.E575K	ENST00000320574	NM_006231.2	575	Gag/Aag																																																																														
BARD1	580	MSKCC	GRCh37	2	215634032	215634032	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	133	384	0	ENST00000260947.4:c.1319A>G	p.Asp440Gly	p.D440G	ENST00000260947	NM_000465.2	440	gAc/gGc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441252	52441252	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	215	428	0	ENST00000460680.1:c.518A>C	p.Tyr173Ser	p.Y173S	ENST00000460680	NM_004656.3	173	tAt/tCt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190800	185190800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	155	444	0	ENST00000265026.3:c.1681G>C	p.Glu561Gln	p.E561Q	ENST00000265026	NM_004721.4	561	Gaa/Caa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38991061	38991061	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	121	291	0	ENST00000357387.3:c.573C>G	p.Ile191Met	p.I191M	ENST00000357387	NM_152756.3	191	atC/atG																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636777	176636777	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	141	382	0	ENST00000439151.2:c.1377C>G	p.Asp459Glu	p.D459E	ENST00000439151	NM_022455.4	459	gaC/gaG																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249386	110249386	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	373	645	0	ENST00000374672.4:c.1187A>T	p.His396Leu	p.H396L	ENST00000374672	NM_004235.4	396	cAc/cTc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127703	64127703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	45	312	0	ENST00000334205.4:c.196G>C	p.Val66Leu	p.V66L	ENST00000334205	NM_003942.2	66	Gtg/Ctg																																																																														
PGR	5241	MSKCC	GRCh37	11	100999597	100999597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	166	648	0	ENST00000325455.5:c.205C>G	p.Pro69Ala	p.P69A	ENST00000325455	NM_001202474.3	69	Ccc/Gcc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344419	118344419	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	43	238	0	ENST00000534358.1:c.2545A>T	p.Arg849Ter	p.R849*	ENST00000534358	NM_005933.3	849	Aga/Tga																																																																														
FLT3	2322	MSKCC	GRCh37	13	28602348	28602348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	185	476	0	ENST00000241453.7:c.2020A>C	p.Ile674Leu	p.I674L	ENST00000241453	NM_004119.2	674	Att/Ctt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2135234	2135234	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	116	369	0	ENST00000219476.3:c.4573C>T	p.Gln1525Ter	p.Q1525*	ENST00000219476	NM_000548.3	1525	Cag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032264	10032264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	90	292	1	ENST00000330684.3:c.559G>A	p.Val187Ile	p.V187I	ENST00000330684	NM_001134407.1	187	Gtc/Atc																																																																														
ERG	2078	MSKCC	GRCh37	21	39775440	39775440	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	89	385	0	ENST00000288319.7:c.580T>C	p.Tyr194His	p.Y194H	ENST00000288319	NM_182918.3	194	Tac/Cac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929448	44929449	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	232	518	0	ENST00000377967.4:c.2548_2549insT	p.Gly850ValfsTer6	p.G850Vfs*6	ENST00000377967	NM_021140.2	850	ggg/gTgg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201973	102201987	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTATGTAGATTTATT	GTATGTAGATTTATT	-			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	66	524	0	ENST00000263464.3:c.1324+1_1324+15del		p.X442_splice	ENST00000263464	NM_001165.4	442																																																																															
BIRC3	330	MSKCC	GRCh37	11	102201966	102201967	+	protein_altering_variant	In_Frame_Ins	INS	GA	GA	TCCTTATTTCATATAGG			P-0010938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	90	557	0	ENST00000263464.3:c.1318_1319delinsTCCTTATTTCATATAGG	p.Glu440delinsSerLeuPheHisIleGly	p.E440delinsSLFHIG	ENST00000263464	NM_001165.4	440	GAa/TCCTTATTTCATATAGGa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	148	345	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	112	186	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	51	305	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	195	249	0				ENST00000310581	NM_198253.2																																																																																
ARID2	196528	MSKCC	GRCh37	12	46245858	46245858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	76	390	1	ENST00000334344.6:c.3952C>T	p.Gln1318Ter	p.Q1318*	ENST00000334344	NM_152641.2	1318	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112103020	112103020	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	203	375	0	ENST00000257430.4:c.355C>G	p.Pro119Ala	p.P119A	ENST00000257430	NM_000038.5	119	Cca/Gca																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197187	26197187	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1977	295	1056	0	ENST00000356476.2:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000356476		98	Gag/Cag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680695	30680695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	144	544	0	ENST00000376406.3:c.1024C>T	p.Pro342Ser	p.P342S	ENST00000376406	NM_014641.2	342	Cca/Tca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246290	46246290	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	105	335	1	ENST00000334344.6:c.4384C>T	p.Gln1462Ter	p.Q1462*	ENST00000334344	NM_152641.2	1462	Cag/Tag																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610074	81610074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	103	450	0	ENST00000298171.2:c.1672G>A	p.Val558Met	p.V558M	ENST00000298171	NM_000369.2	558	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0011011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	128	399	1				ENST00000310581	NM_198253.2																																																																																
RHOA	387	MSKCC	GRCh37	3	49412884	49412884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1393	80	655	1	ENST00000418115.1:c.139G>A	p.Glu47Lys	p.E47K	ENST00000418115	NM_001664.2	47	Gag/Aag																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	223	500	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	527	170	1				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0011033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	799	565	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044502	47044502	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	200	528	0	ENST00000329236.7:c.1765G>C	p.Glu589Gln	p.E589Q	ENST00000329236	NM_001204466.1	589	Gaa/Caa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	366	599	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0011081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	19	242	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0011081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	366	283	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803121	1803121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	474	690	1	ENST00000260795.2:c.473G>A	p.Arg158Gln	p.R158Q	ENST00000260795		158	cGg/cAg																																																																														
ALK	238	MSKCC	GRCh37	2	29432743	29432743	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	326	538	1	ENST00000389048.3:c.3745G>A	p.Asp1249Asn	p.D1249N	ENST00000389048	NM_004304.4	1249	Gac/Aac																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024849	31024849	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3171366		P-0011081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	587	478	0	ENST00000375687.4:c.4334C>T	p.Ser1445Phe	p.S1445F	ENST00000375687	NM_015338.5	1445	tCt/tTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266049	41266050	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0011081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	218	380	0	ENST00000349496.5:c.46_47delinsTT	p.Pro16Leu	p.P16L	ENST00000349496	NM_001904.3	16	CCa/TTa																																																																														
RB1	5925	MSKCC	GRCh37	13	49030439	49030440	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0011081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	276	165	0	ENST00000267163.4:c.1914_1915delinsTT	p.Gln639Ter	p.Q639*	ENST00000267163	NM_000321.2	638	acCCag/acTTag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579473	7579474	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0011081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	292	544	0	ENST00000269305.4:c.213_214delinsTT	p.Pro72Ser	p.P72S	ENST00000269305	NM_001126112.2	71	ccCCcc/ccTTcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	32	302	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	77	666	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0011083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	59	272	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0011083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	30	719	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635188	87635188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	53	470	1	ENST00000277120.3:c.2240C>T	p.Thr747Met	p.T747M	ENST00000277120		747	aCg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295247	1295247	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0011083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	45	646	1				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112179290	112179290	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	36	255	0	ENST00000257430.4:c.7999A>G	p.Asn2667Asp	p.N2667D	ENST00000257430	NM_000038.5	2667	Aac/Gac																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924414	112924414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	46	507	0	ENST00000351677.2:c.1360C>T	p.Pro454Ser	p.P454S	ENST00000351677	NM_002834.3	454	Ccg/Tcg																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504070	123504070	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	22	171	1	ENST00000371139.4:c.246T>A	p.Asn82Lys	p.N82K	ENST00000371139	NM_001114937.2	82	aaT/aaA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0011106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	168	455	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	70	289	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	191	251	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0011128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	23	577	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	383	558	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	47	577	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755713	57755713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	63	457	0	ENST00000274289.3:c.74G>T	p.Gly25Val	p.G25V	ENST00000274289	NM_006622.3	25	gGt/gTt																																																																														
MYC	4609	MSKCC	GRCh37	8	128753169	128753169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	200	329	0	ENST00000377970.2:c.1330C>T	p.His444Tyr	p.H444Y	ENST00000377970	NM_002467.4	444	Cac/Tac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061700	38061702	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0011128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	16	175	0	ENST00000250448.2:c.287_289del	p.Met96del	p.M96del	ENST00000250448	NM_004496.3	96	aTGAct/act																																																																														
ATM	472	MSKCC	GRCh37	11	108100043	108100050	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AAACAGAA	AAACAGAA	-			P-0011128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	22	245	0	ENST00000278616.4:c.324_331del	p.Asn109SerfsTer3	p.N109Sfs*3	ENST00000278616	NM_000051.3	108	gcAAACAGAAga/gcga																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78414907	78414914	+	frameshift_variant	Frame_Shift_Del	DEL	CTATAATA	CTATAATA	-			P-0011128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	298	521	0	ENST00000370768.2:c.1852_1859del	p.Tyr618ThrfsTer62	p.Y618Tfs*62	ENST00000370768	NM_003902.3	618	TATTATAGa/a																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	223	240	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0011160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	312	508	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
NBN	4683	MSKCC	GRCh37	8	90958459	90958459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	93	416	1	ENST00000265433.3:c.1979G>T	p.Arg660Ile	p.R660I	ENST00000265433	NM_002485.4	660	aGa/aTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	449	263	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	272	273	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	437	417	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	265	238	1	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	265	238	1	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868419	117868419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1206	409	480	0	ENST00000297338.2:c.923C>T	p.Pro308Leu	p.P308L	ENST00000297338	NM_006265.2	308	cCt/cTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	265	238	1	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005419	29005419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55687105		P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	232	317	0	ENST00000282397.4:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000282397	NM_002019.4	281	cGa/cAa																																																																														
ALK	238	MSKCC	GRCh37	2	29451861	29451861	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	404	572	0	ENST00000389048.3:c.2704G>T	p.Gly902Ter	p.G902*	ENST00000389048	NM_004304.4	902	Gga/Tga																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932979	49932979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	548	569	1	ENST00000296474.3:c.2965C>T	p.Leu989Phe	p.L989F	ENST00000296474	NM_002447.2	989	Ctt/Ttt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390203	89390203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	419	441	0	ENST00000336596.2:c.952C>T	p.Pro318Ser	p.P318S	ENST00000336596	NM_005233.5	318	Cca/Tca																																																																														
IRF4	3662	MSKCC	GRCh37	6	407552	407552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	385	419	0	ENST00000380956.4:c.1310C>T	p.Pro437Leu	p.P437L	ENST00000380956	NM_001195286.1	437	cCa/cTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499706	8499706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	352	375	0	ENST00000356435.5:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000356435		755	Gaa/Aaa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528069	103528069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	289	229	0	ENST00000355739.4:c.3377C>T	p.Ala1126Val	p.A1126V	ENST00000355739	NM_000123.3	1126	gCt/gTt																																																																														
MGA	23269	MSKCC	GRCh37	15	41988652	41988652	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	622	576	0	ENST00000219905.7:c.1444A>C	p.Lys482Gln	p.K482Q	ENST00000219905	NM_001164273.1	482	Aag/Cag																																																																														
MED12	9968	MSKCC	GRCh37	X	70339286	70339286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	358	518	0	ENST00000374080.3:c.163G>A	p.Glu55Lys	p.E55K	ENST00000374080		55	Gag/Aag																																																																														
MED12	9968	MSKCC	GRCh37	X	70345548	70345548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	502	609	1	ENST00000374080.3:c.2407G>A	p.Asp803Asn	p.D803N	ENST00000374080		803	Gac/Aac																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274507	198274508	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	262	434	0	ENST00000335508.6:c.890_891delinsTT	p.Pro297Leu	p.P297L	ENST00000335508	NM_012433.2	297	cCC/cTT																																																																														
MET	4233	MSKCC	GRCh37	7	116397762	116397763	+	missense_variant	Missense_Mutation	DNP	GA	GA	AG			P-0011216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	654	483	1	ENST00000397752.3:c.2036_2037delinsAG	p.Gly679Glu	p.G679E	ENST00000397752	NM_000245.2	679	gGA/gAG																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	199	737	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	72	293	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	93	286	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	260	801	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	181	581	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	237	638	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	247	762	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956964	2956964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	181	581	1	ENST00000396946.4:c.2663G>A	p.Arg888His	p.R888H	ENST00000396946	NM_032415.4	888	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	167	530	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	200	544	7	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	195	682	1	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1461	408	1315	8	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
APC	324	MSKCC	GRCh37	5	112164611	112164611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	131	464	2	ENST00000257430.4:c.1685C>T	p.Thr562Met	p.T562M	ENST00000257430	NM_000038.5	562	aCg/aTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	296	599	0	ENST00000378444.4:c.3621delA	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351359	89351359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1392	403	1287	4	ENST00000301030.4:c.1591G>A	p.Ala531Thr	p.A531T	ENST00000301030	NM_001256183.1	531	Gcc/Acc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524834	187524834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	247	721	0	ENST00000441802.2:c.10846G>A	p.Val3616Ile	p.V3616I	ENST00000441802	NM_005245.3	3616	Gta/Ata																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	32	402	1	ENST00000331920.6:c.114delG	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140891	37140891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	232	799	0	ENST00000373509.5:c.727G>A	p.Glu243Lys	p.E243K	ENST00000373509	NM_002648.3	243	Gag/Aag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57474036	57474036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750429818		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	96	338	0	ENST00000371085.3:c.253G>A	p.Asp85Asn	p.D85N	ENST00000371085	NM_000516.4	85	Gat/Aat																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367798	15367798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	202	660	0	ENST00000263377.2:c.1528C>T	p.Arg510Trp	p.R510W	ENST00000263377	NM_058243.2	510	Cgg/Tgg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	238	791	0	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	341244	341244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	275	764	2	ENST00000262320.3:c.2240C>T	p.Ala747Val	p.A747V	ENST00000262320	NM_003502.3	747	gCg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444809	49444809	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	101	749	0	ENST00000301067.7:c.2657delC	p.Pro886LeufsTer44	p.P886Lfs*44	ENST00000301067	NM_003482.3	886	cCt/ct																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463266	25463266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	187	586	0	ENST00000264709.3:c.2227C>T	p.Pro743Ser	p.P743S	ENST00000264709	NM_175629.2	743	Ccc/Tcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057761	27057761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1390	420	1254	1	ENST00000324856.7:c.1469C>A	p.Pro490Gln	p.P490Q	ENST00000324856	NM_006015.4	490	cCg/cAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65303750	65303750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	275	733	0	ENST00000342505.4:c.3005G>A	p.Arg1002Gln	p.R1002Q	ENST00000342505	NM_002227.2	1002	cGg/cAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466468	120466468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	176	853	2	ENST00000256646.2:c.4651G>A	p.Val1551Ile	p.V1551I	ENST00000256646	NM_024408.3	1551	Gta/Ata																																																																														
XPO1	7514	MSKCC	GRCh37	2	61729157	61729157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	179	767	0	ENST00000401558.2:c.382G>A	p.Gly128Arg	p.G128R	ENST00000401558	NM_003400.3	128	Gga/Aga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162236	47162236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	62	733	0	ENST00000409792.3:c.3890G>A	p.Arg1297His	p.R1297H	ENST00000409792	NM_014159.6	1297	cGt/cAt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026838	71026838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138415721		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	129	588	2	ENST00000318789.4:c.1384G>A	p.Ala462Thr	p.A462T	ENST00000318789	NM_032682.5	462	Gca/Aca																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185184673	185184673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	91	1029	1	ENST00000265026.3:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000265026	NM_004721.4	522	cCt/cTt																																																																														
FIP1L1	81608	MSKCC	GRCh37	4	54292106	54292106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	114	457	0	ENST00000337488.6:c.991C>T	p.Arg331Trp	p.R331W	ENST00000337488	NM_030917.3	331	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247195	153247195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	221	779	0	ENST00000281708.4:c.1607C>T	p.Thr536Met	p.T536M	ENST00000281708	NM_033632.3	536	aCg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295339	1295339	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	125	508	2				ENST00000310581	NM_198253.2																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149440532	149440532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	180	571	3	ENST00000286301.3:c.1862C>T	p.Thr621Met	p.T621M	ENST00000286301	NM_005211.3	621	aCg/aTg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721031	176721031	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	71	699	0	ENST00000439151.2:c.6662A>G	p.Tyr2221Cys	p.Y2221C	ENST00000439151	NM_022455.4	2221	tAt/tGt																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910533	29910533	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	50	451	0	ENST00000376809.5:c.74-1G>A		p.X25_splice	ENST00000376809	NM_002116.7	25																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32180969	32180969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	235	745	0	ENST00000375023.3:c.2381C>T	p.Ala794Val	p.A794V	ENST00000375023	NM_004557.3	794	gCc/gTc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138198219	138198219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	84	376	0	ENST00000237289.4:c.812G>A	p.Arg271Gln	p.R271Q	ENST00000237289	NM_001270507.1	271	cGa/cAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55229303	55229303	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	164	857	0	ENST00000275493.2:c.1610A>T	p.Asp537Val	p.D537V	ENST00000275493	NM_005228.3	537	gAc/gTc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859816	117859816	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1212	301	1018	0	ENST00000297338.2:c.1819C>T	p.Gln607Ter	p.Q607*	ENST00000297338	NM_006265.2	607	Caa/Taa																																																																														
RAD52	5893	MSKCC	GRCh37	12	1036341	1036341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	245	877	2	ENST00000358495.3:c.437C>T	p.Ala146Val	p.A146V	ENST00000358495	NM_134424.2	146	gCg/gTg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037451	12037451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	261	721	0	ENST00000396373.4:c.1082A>G	p.Glu361Gly	p.E361G	ENST00000396373	NM_001987.4	361	gAg/gGg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528104	103528104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140930348		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	167	443	1	ENST00000355739.4:c.3412G>A	p.Val1138Met	p.V1138M	ENST00000355739	NM_000123.3	1138	Gtg/Atg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435750	110435750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	40	140	0	ENST00000375856.3:c.2651G>A	p.Arg884His	p.R884H	ENST00000375856	NM_003749.2	884	cGc/cAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42058345	42058345	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	340	1128	0	ENST00000219905.7:c.8065A>G	p.Arg2689Gly	p.R2689G	ENST00000219905	NM_001164273.1	2689	Agg/Ggg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774216	66774216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	210	730	0	ENST00000307102.5:c.692C>T	p.Ser231Leu	p.S231L	ENST00000307102	NM_002755.3	231	tCg/tTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779382	3779382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143180774		P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	235	686	0	ENST00000262367.5:c.5666C>T	p.Pro1889Leu	p.P1889L	ENST00000262367	NM_004380.2	1889	cCg/cTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827613	72827613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	335	1159	2	ENST00000268489.5:c.8968G>A	p.Val2990Ile	p.V2990I	ENST00000268489	NM_006885.3	2990	Gtt/Att																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131232	17131232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	312	902	1	ENST00000285071.4:c.220C>A	p.Pro74Thr	p.P74T	ENST00000285071	NM_144997.5	74	Ccg/Acg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30264354	30264354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	129	228	4	ENST00000322652.5:c.89C>T	p.Ala30Val	p.A30V	ENST00000322652	NM_015355.2	30	gCg/gTg																																																																														
MAP3K14	0	MSKCC	GRCh37	17	43344772	43344772	+	splice_donor_variant,non_coding_transcript_variant	Splice_Site	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	312	781	0	ENST00000344686.2:n.2432+1G>A		p.X811_splice	ENST00000344686		811																																																																															
BCL2	596	MSKCC	GRCh37	18	60985358	60985358	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	129	865	0	ENST00000333681.4:c.542T>C	p.Leu181Pro	p.L181P	ENST00000333681		181	cTg/cCg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222225	5222225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	184	670	1	ENST00000357368.4:c.3110C>T	p.Pro1037Leu	p.P1037L	ENST00000357368	NM_002850.3	1037	cCc/cTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5273473	5273473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	296	838	0	ENST00000357368.4:c.359C>T	p.Ala120Val	p.A120V	ENST00000357368	NM_002850.3	120	gCc/gTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250425	10250425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	218	713	2	ENST00000340748.4:c.3827G>A	p.Arg1276His	p.R1276H	ENST00000340748		1276	cGc/cAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144026	11144026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	234	723	0	ENST00000344626.4:c.3607C>T	p.Arg1203Cys	p.R1203C	ENST00000344626	NM_003072.3	1203	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288835	15288835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	121	246	3	ENST00000263388.2:c.3904G>A	p.Val1302Ile	p.V1302I	ENST00000263388	NM_000435.2	1302	Gtc/Atc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299808	15299808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	202	701	1	ENST00000263388.2:c.1370G>A	p.Cys457Tyr	p.C457Y	ENST00000263388	NM_000435.2	457	tGt/tAt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271908	18271908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	57	548	0	ENST00000222254.8:c.511G>T	p.Ala171Ser	p.A171S	ENST00000222254	NM_005027.3	171	Gct/Tct																																																																														
ERG	2078	MSKCC	GRCh37	21	39755574	39755574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	235	623	0	ENST00000288319.7:c.1191G>T	p.Gln397His	p.Q397H	ENST00000288319	NM_182918.3	397	caG/caT																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53230805	53230805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	327	459	1	ENST00000375401.3:c.1988C>T	p.Ala663Val	p.A663V	ENST00000375401	NM_004187.3	663	gCg/gTg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29095848	29095849	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	275	799	0	ENST00000328354.6:c.985dup	p.Tyr329LeufsTer12	p.Y329Lfs*12	ENST00000328354	NM_007194.3	329	tac/tTac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828285	72828286	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	351	1213	0	ENST00000268489.5:c.8295dup	p.Asp2766Ter	p.D2766*	ENST00000268489	NM_006885.3	2765	-/T																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433903	49433903	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	205	683	0	ENST00000301067.7:c.7650del	p.Val2551SerfsTer32	p.V2551Sfs*32	ENST00000301067	NM_003482.3	2550	ccT/cc																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495765	72495765	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	193	679	0	ENST00000477973.2:c.305del	p.Arg103AspfsTer33	p.R103Dfs*33	ENST00000477973	NM_012234.5	103	Aga/ga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965348	25965348	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	211	648	0	ENST00000435504.4:c.3858del	p.Glu1287SerfsTer37	p.E1287Sfs*37	ENST00000435504		1286	ccC/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692825	89692826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	61	197	0	ENST00000371953.3:c.313dup	p.Cys105LeufsTer2	p.C105Lfs*2	ENST00000371953	NM_000314.4	103	-/T																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945961	17945961	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	70	919	0	ENST00000458235.1:c.1978del	p.Ala660LeufsTer10	p.A660Lfs*10	ENST00000458235	NM_000215.3	660	Gct/ct																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966176	25966179	+	frameshift_variant	Frame_Shift_Del	DEL	TCTC	TCTC	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	213	849	0	ENST00000435504.4:c.3027_3030del	p.Glu1009AspfsTer35	p.E1009Dfs*35	ENST00000435504		1009	gaGAGA/ga																																																																														
MST1	4485	MSKCC	GRCh37	3	49722906	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	29	190	0	ENST00000449682.2:c.1421del	p.Pro474GlnfsTer52	p.P474Qfs*52	ENST00000449682	NM_020998.3	474	cCa/ca																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119794	70119794	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	257	746	0	ENST00000245479.2:c.800del	p.Pro267LeufsTer12	p.P267Lfs*12	ENST00000245479	NM_000346.3	266	Ccc/cc																																																																														
RHEB	6009	MSKCC	GRCh37	7	151164251	151164252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	150	409	0	ENST00000262187.5:c.508dup	p.Met170AsnfsTer31	p.M170Nfs*31	ENST00000262187	NM_005614.3	170	atg/aAtg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639608	47639608	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	143	590	0	ENST00000233146.2:c.701del	p.Thr234LysfsTer12	p.T234Kfs*12	ENST00000233146	NM_000251.2	234	aCa/aa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905324	50905324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	323	1152	0	ENST00000440232.2:c.537del	p.Arg180GlyfsTer3	p.R180Gfs*3	ENST00000440232	NM_002691.3	178	Ggg/gg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630471	47630473	+	frameshift_variant	Frame_Shift_Del	DEL	CGA	CGA	TT			P-0011226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	254	599	0	ENST00000233146.2:c.141_143delinsTT	p.Glu48TrpfsTer16	p.E48Wfs*16	ENST00000233146	NM_000251.2	47	ggCGAg/ggTTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	38	331	1				ENST00000310581	NM_198253.2																																																																																
CDC73	79577	MSKCC	GRCh37	1	193111029	193111029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	83	224	0	ENST00000367435.3:c.562A>G	p.Lys188Glu	p.K188E	ENST00000367435	NM_024529.4	188	Aaa/Gaa																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652331	48652331	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	318	476	0	ENST00000376670.3:c.1002T>A	p.Phe334Leu	p.F334L	ENST00000376670	NM_002049.3	334	ttT/ttA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	47	233	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0011387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	142	446	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	128	614	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001390	150001390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	155	555	0	ENST00000253339.5:c.2214G>C	p.Lys738Asn	p.K738N	ENST00000253339		738	aaG/aaC																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518106	103518106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	115	356	1	ENST00000355739.4:c.2044G>A	p.Glu682Lys	p.E682K	ENST00000355739	NM_000123.3	682	Gaa/Aaa																																																																														
BLM	641	MSKCC	GRCh37	15	91293213	91293213	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200756519		P-0011387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	56	247	0	ENST00000355112.3:c.715G>C	p.Asp239His	p.D239H	ENST00000355112	NM_000057.2	239	Gat/Cat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788662	3788662	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	111	402	0	ENST00000262367.5:c.4292T>A	p.Ile1431Asn	p.I1431N	ENST00000262367	NM_004380.2	1431	aTt/aAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27098992	27098992	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0011387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	98	366	0	ENST00000324856.7:c.3410del	p.Gly1137AspfsTer24	p.G1137Dfs*24	ENST00000324856	NM_006015.4	1136	gcG/gc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0011519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	273	341	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577113	7577113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	350	554	0	ENST00000269305.4:c.825T>G	p.Cys275Trp	p.C275W	ENST00000269305	NM_001126112.2	275	tgT/tgG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	90	145	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	201	494	0	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	33	236	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	33	236	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	33	236	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521483	46521483	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	61	624	2	ENST00000262741.5:c.925C>T	p.Arg309Ter	p.R309*	ENST00000262741	NM_003629.3	309	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971125	21971126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGTGGCGGGGTC			P-0011568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	23	233	0	ENST00000304494.5:c.220_232dup	p.Leu78ArgfsTer46	p.L78Rfs*46	ENST00000304494	NM_000077.4	78	ctc/cGACCCCGCCACTCtc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971125	21971126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGTGGCGGGGTC			P-0011568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	23	233	0	ENST00000304494.5:c.220_232dup	p.Leu78ArgfsTer46	p.L78Rfs*46	ENST00000304494	NM_000077.4	78	ctc/cGACCCCGCCACTCtc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	137	337	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	67	269	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936103	178936103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	56	185	0	ENST00000263967.3:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000263967	NM_006218.2	549	Gat/Aat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	80	243	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	207	547	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
CDK8	1024	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	40	416	0	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76909629	76909629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1329	76	808	0	ENST00000373344.5:c.4276C>T	p.Arg1426Ter	p.R1426*	ENST00000373344	NM_000489.3	1426	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045676	47045676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	109	382	0	ENST00000329236.7:c.2323C>T	p.Arg775Trp	p.R775W	ENST00000329236	NM_001204466.1	775	Cgg/Tgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417596	139417596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	61	522	0	ENST00000277541.6:c.448G>A	p.Ala150Thr	p.A150T	ENST00000277541	NM_017617.3	150	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	45	351	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108172385	108172385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	90	319	1	ENST00000278616.4:c.5188C>T	p.Arg1730Ter	p.R1730*	ENST00000278616	NM_000051.3	1730	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	106	380	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12013719	12013719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	101	291	0	ENST00000353533.5:c.661G>T	p.Glu221Ter	p.E221*	ENST00000353533	NM_003010.3	221	Gaa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	42021428	42021428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	256	743	1	ENST00000219905.7:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000219905	NM_001164273.1	1242	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	181	494	1	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181765	56181765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	46	326	1	ENST00000399503.3:c.3989C>T	p.Ser1330Leu	p.S1330L	ENST00000399503	NM_005921.1	1330	tCg/tTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112412	115112412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	36	315	0	ENST00000257566.3:c.1328C>T	p.Ser443Leu	p.S443L	ENST00000257566	NM_016569.3	443	tCg/tTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912007	32912007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1422	106	785	0	ENST00000380152.3:c.3515C>T	p.Ser1172Leu	p.S1172L	ENST00000380152		1172	tCg/tTg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570366	87570366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1210	68	613	1	ENST00000277120.3:c.2106G>T	p.Glu702Asp	p.E702D	ENST00000277120		702	gaG/gaT																																																																														
ATM	472	MSKCC	GRCh37	11	108098533	108098533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	63	197	0	ENST00000278616.4:c.103C>T	p.Arg35Ter	p.R35*	ENST00000278616	NM_000051.3	35	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828552	72828552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1530	167	842	2	ENST00000268489.5:c.8029G>A	p.Glu2677Lys	p.E2677K	ENST00000268489	NM_006885.3	2677	Gag/Aag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464916	120464916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	47	302	0	ENST00000256646.2:c.5156G>A	p.Arg1719Gln	p.R1719Q	ENST00000256646	NM_024408.3	1719	cGa/cAa																																																																														
RHEB	6009	MSKCC	GRCh37	7	151167676	151167676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	86	358	0	ENST00000262187.5:c.443C>A	p.Ser148Tyr	p.S148Y	ENST00000262187	NM_005614.3	148	tCt/tAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543829	212543829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	55	347	0	ENST00000342788.4:c.1570C>T	p.Arg524Cys	p.R524C	ENST00000342788	NM_005235.2	524	Cgc/Tgc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94224031	94224031	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116679717		P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	60	448	0	ENST00000323929.3:c.121G>A	p.Asp41Asn	p.D41N	ENST00000323929	NM_005591.3	41	Gat/Aat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55136804	55136804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	118	334	1	ENST00000257290.5:c.1126C>T	p.Arg376Ter	p.R376*	ENST00000257290	NM_006206.4	376	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29527462	29527462	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76015786		P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	90	312	0	ENST00000358273.4:c.911G>A	p.Arg304Gln	p.R304Q	ENST00000358273	NM_001042492.2	304	cGa/cAa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1210	374	843	0	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48941654	48941654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	29	291	0	ENST00000267163.4:c.964G>A	p.Glu322Lys	p.E322K	ENST00000267163	NM_000321.2	322	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261766	16261766	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	134	319	0	ENST00000375759.3:c.9031C>T	p.Arg3011Ter	p.R3011*	ENST00000375759	NM_015001.2	3011	Cga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65300295	65300295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	42	254	0	ENST00000342505.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000342505	NM_002227.2	1139	Cgg/Tgg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65300313	65300313	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	25	245	0	ENST00000342505.4:c.3397G>T	p.Glu1133Ter	p.E1133*	ENST00000342505	NM_002227.2	1133	Gaa/Taa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65344804	65344804	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	64	359	0	ENST00000342505.4:c.233T>C	p.Phe78Ser	p.F78S	ENST00000342505	NM_002227.2	78	tTt/tCt																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176145073	176145073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	54	502	0	ENST00000367669.3:c.538A>G	p.Ile180Val	p.I180V	ENST00000367669	NM_022457.5	180	Att/Gtt																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612764	228612764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1660	92	952	1	ENST00000366696.1:c.263C>T	p.Ser88Leu	p.S88L	ENST00000366696	NM_003493.2	88	tCg/tTg																																																																														
FH	2271	MSKCC	GRCh37	1	241669390	241669390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	49	410	0	ENST00000366560.3:c.817G>A	p.Ala273Thr	p.A273T	ENST00000366560	NM_000143.3	273	Gca/Aca																																																																														
AKT3	10000	MSKCC	GRCh37	1	243828129	243828129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	54	472	0	ENST00000263826.5:c.229C>A	p.Leu77Ile	p.L77I	ENST00000263826	NM_005465.4	77	Ctc/Atc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47607082	47607082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	125	527	0	ENST00000263735.4:c.832G>A	p.Ala278Thr	p.A278T	ENST00000263735	NM_002354.2	278	Gca/Aca																																																																														
REL	5966	MSKCC	GRCh37	2	61128173	61128173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	26	234	0	ENST00000295025.8:c.349G>A	p.Glu117Lys	p.E117K	ENST00000295025	NM_002908.2	117	Gaa/Aaa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99193602	99193602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	64	228	0	ENST00000074304.5:c.2797C>T	p.Arg933Cys	p.R933C	ENST00000074304	NM_001134224.1	933	Cgc/Tgc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99203950	99203950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	116	317	0	ENST00000074304.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000074304	NM_001134224.1	938	cGa/cAa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713506	30713506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	35	264	0	ENST00000359013.4:c.906G>T	p.Lys302Asn	p.K302N	ENST00000359013	NM_001024847.2	302	aaG/aaT																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277225	41277225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	53	376	1	ENST00000349496.5:c.1694G>A	p.Arg565His	p.R565H	ENST00000349496	NM_001904.3	565	cGc/cAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125370	47125370	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143991928		P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1273	69	642	1	ENST00000409792.3:c.5900G>A	p.Gly1967Asp	p.G1967D	ENST00000409792	NM_014159.6	1967	gGc/gAc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119634999	119634999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	53	339	0	ENST00000316626.5:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000316626		167	cGa/cAa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205733	128205733	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	105	623	0	ENST00000341105.2:c.142T>G	p.Phe48Val	p.F48V	ENST00000341105	NM_032638.4	48	Ttc/Gtc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916861	178916861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1329	315	937	0	ENST00000263967.3:c.248T>C	p.Phe83Ser	p.F83S	ENST00000263967	NM_006218.2	83	tTt/tCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921533	178921533	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1428379257		P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	72	325	1	ENST00000263967.3:c.1015C>A	p.Leu339Ile	p.L339I	ENST00000263967	NM_006218.2	339	Ctt/Att																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185169106	185169106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	238	579	3	ENST00000265026.3:c.1201C>T	p.Arg401Trp	p.R401W	ENST00000265026	NM_004721.4	401	Cgg/Tgg																																																																														
KDR	3791	MSKCC	GRCh37	4	55955592	55955592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	102	637	0	ENST00000263923.4:c.3353G>A	p.Arg1118Gln	p.R1118Q	ENST00000263923	NM_002253.2	1118	cGa/cAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356309	66356309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	50	359	0	ENST00000273854.3:c.1188G>T	p.Lys396Asn	p.K396N	ENST00000273854	NM_004439.5	396	aaG/aaT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467575	66467575	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	131	404	1	ENST00000273854.3:c.694A>G	p.Lys232Glu	p.K232E	ENST00000273854	NM_004439.5	232	Aaa/Gaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157539	106157539	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192553789		P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	111	404	0	ENST00000380013.4:c.2440C>T	p.Arg814Cys	p.R814C	ENST00000380013	NM_001127208.2	814	Cgt/Tgt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003277	143003277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	63	379	0	ENST00000262992.4:c.2549C>T	p.Ser850Leu	p.S850L	ENST00000262992	NM_001101669.1	850	tCg/tTg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007319	143007319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	108	309	1	ENST00000262992.4:c.2465A>G	p.Glu822Gly	p.E822G	ENST00000262992	NM_001101669.1	822	gAa/gGa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143043280	143043280	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	138	407	0	ENST00000262992.4:c.2135+1G>A		p.X712_splice	ENST00000262992	NM_001101669.1	712																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539097	187539097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	61	438	0	ENST00000441802.2:c.8643C>A	p.Asp2881Glu	p.D2881E	ENST00000441802	NM_005245.3	2881	gaC/gaA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628440	187628440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	153	362	1	ENST00000441802.2:c.2542G>A	p.Asp848Asn	p.D848N	ENST00000441802	NM_005245.3	848	Gat/Aat																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670124	86670124	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	96	332	0	ENST00000274376.6:c.1921G>T	p.Glu641Ter	p.E641*	ENST00000274376	NM_002890.2	641	Gag/Tag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675635	86675635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	26	235	0	ENST00000274376.6:c.2571G>T	p.Glu857Asp	p.E857D	ENST00000274376	NM_002890.2	857	gaG/gaT																																																																														
RAD50	10111	MSKCC	GRCh37	5	131894980	131894980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	103	245	0	ENST00000265335.6:c.134T>C	p.Ile45Thr	p.I45T	ENST00000265335		45	aTc/aCc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636744	176636744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	152	450	2	ENST00000439151.2:c.1344G>T	p.Lys448Asn	p.K448N	ENST00000439151	NM_022455.4	448	aaG/aaT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066648	94066648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1221	272	778	1	ENST00000369303.4:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000369303	NM_004440.3	371	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642470	117642470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	247	733	1	ENST00000368508.3:c.5729G>A	p.Arg1910Gln	p.R1910Q	ENST00000368508	NM_002944.2	1910	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117679091	117679091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	39	312	0	ENST00000368508.3:c.3730G>A	p.Glu1244Lys	p.E1244K	ENST00000368508	NM_002944.2	1244	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81331962	81331962	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201768315		P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	39	425	0	ENST00000222390.5:c.2122C>T	p.Arg708Ter	p.R708*	ENST00000222390	NM_000601.4	708	Cga/Tga																																																																														
HGF	3082	MSKCC	GRCh37	7	81334816	81334816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	31	346	0	ENST00000222390.5:c.1900C>A	p.Leu634Ile	p.L634I	ENST00000222390	NM_000601.4	634	Ctc/Atc																																																																														
HGF	3082	MSKCC	GRCh37	7	81374415	81374415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	38	365	1	ENST00000222390.5:c.647G>T	p.Gly216Val	p.G216V	ENST00000222390	NM_000601.4	216	gGg/gTg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148512615	148512615	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	103	263	0	ENST00000320356.2:c.1529A>C	p.Lys510Thr	p.K510T	ENST00000320356	NM_004456.4	510	aAg/aCg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151848562	151848562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	60	494	1	ENST00000262189.6:c.12631C>T	p.Arg4211Trp	p.R4211W	ENST00000262189	NM_170606.2	4211	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151849886	151849886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	144	443	2	ENST00000262189.6:c.12430C>A	p.Leu4144Ile	p.L4144I	ENST00000262189	NM_170606.2	4144	Ctc/Atc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879166	151879166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	50	531	0	ENST00000262189.6:c.5779A>G	p.Thr1927Ala	p.T1927A	ENST00000262189	NM_170606.2	1927	Aca/Gca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884870	151884870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	129	361	0	ENST00000262189.6:c.4723A>C	p.Asn1575His	p.N1575H	ENST00000262189	NM_170606.2	1575	Aat/Cat																																																																														
RET	5979	MSKCC	GRCh37	10	43597849	43597849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	282	765	2	ENST00000355710.3:c.397C>T	p.Arg133Cys	p.R133C	ENST00000355710	NM_020975.4	133	Cgt/Tgt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850777	63850777	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	206	486	2	ENST00000279873.7:c.1555G>T	p.Glu519Ter	p.E519*	ENST00000279873	NM_032199.2	519	Gaa/Taa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851773	63851773	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	156	488	0	ENST00000279873.7:c.2551G>T	p.Glu851Ter	p.E851*	ENST00000279873	NM_032199.2	851	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653824	89653824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	82	342	0	ENST00000371953.3:c.122G>A	p.Arg41Lys	p.R41K	ENST00000371953	NM_000314.4	41	aGa/aAa																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588164	69588164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1212	279	780	2	ENST00000168712.1:c.534C>A	p.Phe178Leu	p.F178L	ENST00000168712	NM_002007.2	178	ttC/ttA																																																																														
ATM	472	MSKCC	GRCh37	11	108150330	108150330	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	43	231	0	ENST00000278616.4:c.3397G>T	p.Glu1133Ter	p.E1133*	ENST00000278616	NM_000051.3	1133	Gaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372512	118372512	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	257	639	0	ENST00000534358.1:c.6445C>T	p.Arg2149Ter	p.R2149*	ENST00000534358	NM_005933.3	2149	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287441	46287441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	96	316	0	ENST00000334344.6:c.5300A>G	p.His1767Arg	p.H1767R	ENST00000334344	NM_152641.2	1767	cAc/cGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428709	49428709	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	94	453	0	ENST00000301067.7:c.10241A>C	p.Lys3414Thr	p.K3414T	ENST00000301067	NM_003482.3	3414	aAa/aCa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	159	536	1	ENST00000267101.3:c.273G>T	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atT																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493772	56493772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	60	460	5	ENST00000267101.3:c.3088G>A	p.Ala1030Thr	p.A1030T	ENST00000267101	NM_001982.3	1030	Gcc/Acc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864432	57864432	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	200	692	0	ENST00000228682.2:c.1909C>G	p.Arg637Gly	p.R637G	ENST00000228682	NM_005269.2	637	Cgg/Ggg																																																																														
POLE	5426	MSKCC	GRCh37	12	133212495	133212495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	67	388	1	ENST00000320574.5:c.5794C>T	p.Arg1932Cys	p.R1932C	ENST00000320574	NM_006231.2	1932	Cgt/Tgt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623876	28623876	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	96	343	0	ENST00000241453.7:c.778T>G	p.Leu260Val	p.L260V	ENST00000241453	NM_004119.2	260	Tta/Gta																																																																														
FLT1	2321	MSKCC	GRCh37	13	28883012	28883012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	203	539	0	ENST00000282397.4:c.3688G>T	p.Glu1230Ter	p.E1230*	ENST00000282397	NM_002019.4	1230	Gaa/Taa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347911	73347911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146500302		P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	130	362	0	ENST00000377767.4:c.1150C>T	p.Arg384Cys	p.R384C	ENST00000377767	NM_014953.3	384	Cgc/Tgc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582053	95582053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	52	482	1	ENST00000343455.3:c.1858G>A	p.Asp620Asn	p.D620N	ENST00000343455	NM_177438.2	620	Gat/Aat																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14024709	14024709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	42	339	0	ENST00000311895.7:c.935C>T	p.Ser312Phe	p.S312F	ENST00000311895	NM_005236.2	312	tCt/tTt																																																																														
CBFB	865	MSKCC	GRCh37	16	67100694	67100694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	164	491	0	ENST00000412916.2:c.392G>A	p.Arg131Gln	p.R131Q	ENST00000412916		131	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645255	67645255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	178	446	0	ENST00000264010.4:c.520G>A	p.Glu174Lys	p.E174K	ENST00000264010	NM_006565.3	174	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992936	72992936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1451	136	843	1	ENST00000268489.5:c.1109G>A	p.Gly370Asp	p.G370D	ENST00000268489	NM_006885.3	370	gGc/gAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349058	89349058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1533	106	864	2	ENST00000301030.4:c.3892G>A	p.Asp1298Asn	p.D1298N	ENST00000301030	NM_001256183.1	1298	Gat/Aat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357135	89357135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1540	91	814	0	ENST00000301030.4:c.499C>T	p.Arg167Cys	p.R167C	ENST00000301030	NM_001256183.1	167	Cgt/Tgt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7983233	7983233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	87	585	0	ENST00000319144.4:c.781G>A	p.Asp261Asn	p.D261N	ENST00000319144	NM_001139.2	261	Gac/Aac																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40368066	40368066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1432	95	753	0	ENST00000293328.3:c.1439C>T	p.Ala480Val	p.A480V	ENST00000293328	NM_012448.3	480	gCc/gTc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368218	45368218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	81	478	2	ENST00000262160.6:c.1384C>T	p.Arg462Cys	p.R462C	ENST00000262160	NM_005901.5	462	Cgt/Tgt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1625592	1625592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1288	75	717	0	ENST00000344749.5:c.482C>T	p.Ala161Val	p.A161V	ENST00000344749	NM_001136139.2	161	gCg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138509	11138509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	174	527	0	ENST00000344626.4:c.3265C>A	p.Leu1089Ile	p.L1089I	ENST00000344626	NM_003072.3	1089	Ctt/Att																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302801	15302801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	39	262	0	ENST00000263388.2:c.649G>A	p.Asp217Asn	p.D217N	ENST00000263388	NM_000435.2	217	Gac/Aac																																																																														
CIC	23152	MSKCC	GRCh37	19	42797910	42797910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	107	529	2	ENST00000575354.2:c.3962G>A	p.Arg1321His	p.R1321H	ENST00000575354	NM_015125.3	1321	cGc/cAc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281219	46281219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1294	81	771	0	ENST00000371998.3:c.4016G>T	p.Arg1339Ile	p.R1339I	ENST00000371998		1339	aGa/aTa																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22123600	22123600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	76	446	0	ENST00000215832.6:c.976G>A	p.Glu326Lys	p.E326K	ENST00000215832	NM_002745.4	326	Gaa/Aaa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317499	1317499	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1250	105	779	0				ENST00000381566																																																																																	
BCOR	54880	MSKCC	GRCh37	X	39932948	39932948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	61	505	2	ENST00000378444.4:c.1651G>A	p.Asp551Asn	p.D551N	ENST00000378444	NM_001123385.1	551	Gat/Aat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411980	63411980	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	76	923	1	ENST00000330258.3:c.1187A>T	p.Glu396Val	p.E396V	ENST00000330258	NM_152424.3	396	gAg/gTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70345910	70345910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	126	622	0	ENST00000374080.3:c.2447G>A	p.Arg816Gln	p.R816Q	ENST00000374080		816	cGa/cAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70346191	70346191	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1309	108	779	1	ENST00000374080.3:c.2542G>A	p.Val848Ile	p.V848I	ENST00000374080		848	Gtc/Atc																																																																														
ATRX	546	MSKCC	GRCh37	X	76829806	76829806	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	66	572	1	ENST00000373344.5:c.6235C>T	p.Arg2079Ter	p.R2079*	ENST00000373344	NM_000489.3	2079	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76918943	76918943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1423	95	768	0	ENST00000373344.5:c.4048G>A	p.Gly1350Arg	p.G1350R	ENST00000373344	NM_000489.3	1350	Gga/Aga																																																																														
ATRX	546	MSKCC	GRCh37	X	76938065	76938065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	166	503	1	ENST00000373344.5:c.2683G>A	p.Val895Ile	p.V895I	ENST00000373344	NM_000489.3	895	Gtt/Att																																																																														
BTK	695	MSKCC	GRCh37	X	100617634	100617634	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	186	602	1	ENST00000308731.7:c.435C>A	p.Cys145Ter	p.C145*	ENST00000308731	NM_000061.2	145	tgC/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	29	130	0				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10273946	10273946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	94	469	1	ENST00000330684.3:c.323C>T	p.Ala108Val	p.A108V	ENST00000330684	NM_001134407.1	108	gCc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	224	236	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	541	364	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	587	524	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949069	151949069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	229	333	0	ENST00000262189.6:c.1576C>T	p.Arg526Cys	p.R526C	ENST00000262189	NM_170606.2	526	Cgt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528644	89528644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147992008		P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	335	233	0	ENST00000336596.2:c.2944C>T	p.Pro982Ser	p.P982S	ENST00000336596	NM_005233.5	982	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434664	49434664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	200	389	1	ENST00000301067.7:c.6889C>T	p.Pro2297Ser	p.P2297S	ENST00000301067	NM_003482.3	2297	Cct/Tct																																																																														
BTK	695	MSKCC	GRCh37	X	100611144	100611144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	266	214	0	ENST00000308731.7:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000308731	NM_000061.2	488	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486824	56486824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	630	498	0	ENST00000267101.3:c.1238C>T	p.Ser413Phe	p.S413F	ENST00000267101	NM_001982.3	413	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	29474038	29474038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	279	500	1	ENST00000389048.3:c.2137G>A	p.Glu713Lys	p.E713K	ENST00000389048	NM_004304.4	713	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537974	212537974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	336	297	0	ENST00000342788.4:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000342788	NM_005235.2	544	cGg/cAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212568872	212568872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	210	357	0	ENST00000342788.4:c.1246G>T	p.Val416Phe	p.V416F	ENST00000342788	NM_005235.2	416	Gtt/Ttt																																																																														
TP63	8626	MSKCC	GRCh37	3	189455576	189455576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	188	283	0	ENST00000264731.3:c.110G>A	p.Arg37Gln	p.R37Q	ENST00000264731	NM_003722.4	37	cGa/cAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163672	32163672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	289	212	0	ENST00000375023.3:c.5554C>T	p.Pro1852Ser	p.P1852S	ENST00000375023	NM_004557.3	1852	Ccg/Tcg																																																																														
HGF	3082	MSKCC	GRCh37	7	81335602	81335602	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	349	291	0	ENST00000222390.5:c.1757+1G>A		p.X586_splice	ENST00000222390	NM_000601.4	586																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38277071	38277071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	186	315	0	ENST00000425967.3:c.1357C>T	p.Pro453Ser	p.P453S	ENST00000425967	NM_001174067.1	453	Cct/Tct																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370799	55370799	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	206	221	0	ENST00000297316.4:c.101A>G	p.Glu34Gly	p.E34G	ENST00000297316	NM_022454.3	34	gAg/gGg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87366935	87366935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	331	583	1	ENST00000277120.3:c.1331G>A	p.Gly444Glu	p.G444E	ENST00000277120		444	gGa/gAa																																																																														
RET	5979	MSKCC	GRCh37	10	43612046	43612046	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	351	657	0	ENST00000355710.3:c.2151G>A	p.Trp717Ter	p.W717*	ENST00000355710	NM_020975.4	717	tgG/tgA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342715	118342715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	405	307	0	ENST00000534358.1:c.841C>T	p.Leu281Phe	p.L281F	ENST00000534358	NM_005933.3	281	Ctc/Ttc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18466994	18466994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	351	276	2	ENST00000266497.5:c.1133G>A	p.Arg378Gln	p.R378Q	ENST00000266497		378	cGa/cAa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622446	28622446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	377	303	0	ENST00000241453.7:c.1171C>T	p.Pro391Ser	p.P391S	ENST00000241453	NM_004119.2	391	Cct/Tct																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284946	15284946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	351	334	0	ENST00000263388.2:c.4669C>T	p.Pro1557Ser	p.P1557S	ENST00000263388	NM_000435.2	1557	Cct/Tct																																																																														
MTOR	2475	MSKCC	GRCh37	1	11303192	11303193	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	403	350	0	ENST00000361445.4:c.1390_1391delinsTT	p.Pro464Phe	p.P464F	ENST00000361445	NM_004958.3	464	CCc/TTc																																																																														
AKT2	208	MSKCC	GRCh37	19	40747932	40747933	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	247	391	0	ENST00000392038.2:c.485_486delinsTT	p.Thr162Ile	p.T162I	ENST00000392038	NM_001626.4	162	aCC/aTT																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518724	176518725	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	323	290	1	ENST00000292408.4:c.642_643delinsAA	p.Val215Met	p.V215M	ENST00000292408	NM_213647.1	214	gtGGtg/gtAAtg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845482	151845484	+	missense_variant	Missense_Mutation	ONP	TCC	TCC	CCT			P-0012080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	177	375	1	ENST00000262189.6:c.13528_13530delinsAGG	p.Gly4510Arg	p.G4510R	ENST00000262189	NM_170606.2	4510	GGA/AGG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	104	365	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579525	7579525	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	425	483	2	ENST00000269305.4:c.162del	p.Phe54LeufsTer69	p.F54Lfs*69	ENST00000269305	NM_001126112.2	54	ttC/tt																																																																														
RB1	5925	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	326	492	3	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729610	162729610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	313	329	0	ENST00000367921.3:c.696G>C	p.Leu232Phe	p.L232F	ENST00000367921	NM_006182.2	232	ttG/ttC																																																																														
INHA	3623	MSKCC	GRCh37	2	220437275	220437275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	687	755	0	ENST00000243786.2:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000243786	NM_002191.3	60	cGa/cAa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783346	9783346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	250	473	2	ENST00000377346.4:c.2590C>A	p.Pro864Thr	p.P864T	ENST00000377346	NM_005026.3	864	Ccg/Acg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464459	25464459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	439	456	0	ENST00000264709.3:c.2054G>T	p.Gly685Val	p.G685V	ENST00000264709	NM_175629.2	685	gGg/gTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134977915	134977915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	300	578	0	ENST00000398015.3:c.2908C>A	p.His970Asn	p.H970N	ENST00000398015	NM_004441.4	970	Cat/Aat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197692	66197692	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	165	301	0	ENST00000273854.3:c.3007G>T	p.Glu1003Ter	p.E1003*	ENST00000273854	NM_004439.5	1003	Gag/Tag																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149457755	149457755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	154	401	0	ENST00000286301.3:c.649G>T	p.Gly217Trp	p.G217W	ENST00000286301	NM_005211.3	217	Ggg/Tgg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729696	41729696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	656	856	1	ENST00000242208.4:c.833G>T	p.Gly278Val	p.G278V	ENST00000242208	NM_002192.2	278	gGg/gTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128845547	128845547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	251	472	0	ENST00000249373.3:c.844C>A	p.Leu282Met	p.L282M	ENST00000249373	NM_005631.4	282	Ctg/Atg																																																																														
SMO	6608	MSKCC	GRCh37	7	128851482	128851482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	269	509	0	ENST00000249373.3:c.1807T>A	p.Leu603Met	p.L603M	ENST00000249373	NM_005631.4	603	Ttg/Atg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389333	8389333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	590	631	0	ENST00000356435.5:c.4285C>A	p.Gln1429Lys	p.Q1429K	ENST00000356435		1429	Cag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507336	8507336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	312	565	0	ENST00000356435.5:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000356435		548	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528755	8528755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	405	407	0	ENST00000356435.5:c.377C>A	p.Pro126His	p.P126H	ENST00000356435		126	cCt/cAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636758	8636758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	209	334	0	ENST00000356435.5:c.151C>T	p.Pro51Ser	p.P51S	ENST00000356435		51	Cca/Tca																																																																														
PAX5	5079	MSKCC	GRCh37	9	36882067	36882067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	229	522	0	ENST00000358127.4:c.946C>A	p.Pro316Thr	p.P316T	ENST00000358127	NM_001280556.1	316	Cct/Act																																																																														
TET1	80312	MSKCC	GRCh37	10	70332949	70332949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	337	634	0	ENST00000373644.4:c.854C>G	p.Ser285Cys	p.S285C	ENST00000373644	NM_030625.2	285	tCt/tGt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127755	64127755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	133	267	0	ENST00000334205.4:c.248G>T	p.Arg83Leu	p.R83L	ENST00000334205	NM_003942.2	83	cGc/cTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861159	57861159	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	305	704	0	ENST00000228682.2:c.956A>G	p.Lys319Arg	p.K319R	ENST00000228682	NM_005269.2	319	aAg/aGg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436473	110436473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	233	497	0	ENST00000375856.3:c.1928C>G	p.Ser643Cys	p.S643C	ENST00000375856	NM_003749.2	643	tCc/tGc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678622	88678622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	170	174	0	ENST00000360948.2:c.914C>A	p.Pro305Gln	p.P305Q	ENST00000360948	NM_001012338.2	305	cCa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992463	72992463	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	331	852	2	ENST00000268489.5:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000268489	NM_006885.3	528	Caa/Taa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89857888	89857888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	167	380	1	ENST00000389301.3:c.1282G>T	p.Val428Phe	p.V428F	ENST00000389301	NM_000135.2	428	Gtc/Ttc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47679227	47679227	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	818	358	0	ENST00000347630.2:c.980A>T	p.Tyr327Phe	p.Y327F	ENST00000347630	NM_001007230.1	327	tAt/tTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602520	10602520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	328	345	0	ENST00000171111.5:c.1058T>C	p.Leu353Pro	p.L353P	ENST00000171111	NM_203500.1	353	cTc/cCc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105646	11105646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	436	340	0	ENST00000344626.4:c.1562G>T	p.Arg521Leu	p.R521L	ENST00000344626	NM_003072.3	521	cGg/cTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152033	11152033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	354	269	1	ENST00000344626.4:c.4221G>T	p.Lys1407Asn	p.K1407N	ENST00000344626	NM_003072.3	1407	aaG/aaT																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546751	9546751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	285	285	0	ENST00000353224.5:c.1271C>A	p.Pro424His	p.P424H	ENST00000353224	NM_177990.2	424	cCc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076889	41076889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	259	535	1	ENST00000373198.4:c.1531G>A	p.Glu511Lys	p.E511K	ENST00000373198	NM_133170.3	511	Gag/Aag																																																																														
NF2	4771	MSKCC	GRCh37	22	30000025	30000025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	215	504	0	ENST00000338641.4:c.38C>A	p.Ser13Tyr	p.S13Y	ENST00000338641	NM_000268.3	13	tCt/tAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41537133	41537133	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	240	423	0	ENST00000263253.7:c.1960A>T	p.Lys654Ter	p.K654*	ENST00000263253	NM_001429.3	654	Aag/Tag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918349	44918349	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	242	424	0	ENST00000377967.4:c.974G>T	p.Gly325Val	p.G325V	ENST00000377967	NM_021140.2	325	gGt/gTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006764	47006764	+	5_prime_UTR_variant	5'UTR	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	816	545	1	ENST00000329236.7:c.-117C>A		p.*39*	ENST00000329236	NM_001204466.1																																																																																
RBM10	8241	MSKCC	GRCh37	X	47035965	47035965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1358	300	648	0	ENST00000329236.7:c.412G>A	p.Glu138Lys	p.E138K	ENST00000329236	NM_001204466.1	138	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76875944	76875944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	397	628	0	ENST00000373344.5:c.5191G>T	p.Val1731Phe	p.V1731F	ENST00000373344	NM_000489.3	1731	Gtt/Ttt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937284	76937284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	292	474	0	ENST00000373344.5:c.3464C>T	p.Ser1155Leu	p.S1155L	ENST00000373344	NM_000489.3	1155	tCa/tTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535432	66535432	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	92	219	0	ENST00000273854.3:c.29del	p.Gly10AspfsTer52	p.G10Dfs*52	ENST00000273854	NM_004439.5	10	gGa/ga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280094	66280095	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0012082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	232	406	0	ENST00000273854.3:c.1594_1595delinsAA	p.Pro532Lys	p.P532K	ENST00000273854	NM_004439.5	532	CCa/AAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	105	263	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	179	470	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0012183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	224	595	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480320	56480320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	293	656	0	ENST00000267101.3:c.427C>A	p.Leu143Met	p.L143M	ENST00000267101	NM_001982.3	143	Ctg/Atg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100093	27100093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	364	971	0	ENST00000324856.7:c.3889G>C	p.Glu1297Gln	p.E1297Q	ENST00000324856	NM_006015.4	1297	Gag/Cag																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287404	33287404	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	324	716	0	ENST00000374542.5:c.1693C>T	p.Gln565Ter	p.Q565*	ENST00000374542	NM_001141970.1	565	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108106537	108106537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	187	447	0	ENST00000278616.4:c.472G>A	p.Glu158Lys	p.E158K	ENST00000278616	NM_000051.3	158	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969496	44969496	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0012183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	298	475	0	ENST00000377967.4:c.4176+2T>G		p.X1392_splice	ENST00000377967	NM_021140.2	1392																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195076	123195076	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0012183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	263	274	0	ENST00000218089.9:c.1419del	p.Leu473PhefsTer20	p.L473Ffs*20	ENST00000218089	NM_001042749.1	473	ttA/tt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	76	411	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	290	575	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	148	504	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	148	504	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060574	38060574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	294	1007	2	ENST00000250448.2:c.1415C>T	p.Ser472Phe	p.S472F	ENST00000250448	NM_004496.3	472	tCc/tTc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78426086	78426086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	180	669	0	ENST00000370768.2:c.1439C>T	p.Pro480Leu	p.P480L	ENST00000370768	NM_003902.3	480	cCa/cTa																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206658359	206658359	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	104	393	0	ENST00000367120.3:c.1453G>T	p.Glu485Ter	p.E485*	ENST00000367120	NM_014002.3	485	Gag/Tag																																																																														
ATR	545	MSKCC	GRCh37	3	142212108	142212108	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	297	558	0	ENST00000350721.4:c.5944T>A	p.Leu1982Ile	p.L1982I	ENST00000350721	NM_001184.3	1982	Tta/Ata																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964399	93964399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	210	917	0	ENST00000369303.4:c.2498G>A	p.Gly833Glu	p.G833E	ENST00000369303	NM_004440.3	833	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686799	117686799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	157	593	1	ENST00000368508.3:c.2918C>T	p.Pro973Leu	p.P973L	ENST00000368508	NM_002944.2	973	cCt/cTt																																																																														
HGF	3082	MSKCC	GRCh37	7	81335657	81335657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	310	609	1	ENST00000222390.5:c.1703C>T	p.Ser568Phe	p.S568F	ENST00000222390	NM_000601.4	568	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139408960	139408960	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	258	368	1	ENST00000277541.6:c.2207+2T>A		p.X736_splice	ENST00000277541	NM_017617.3	736																																																																															
RET	5979	MSKCC	GRCh37	10	43596088	43596088	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	153	588	0	ENST00000355710.3:c.255G>A	p.Trp85Ter	p.W85*	ENST00000355710	NM_020975.4	85	tgG/tgA																																																																														
RET	5979	MSKCC	GRCh37	10	43619187	43619187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	143	753	1	ENST00000355710.3:c.2870C>T	p.Pro957Leu	p.P957L	ENST00000355710	NM_020975.4	957	cCt/cTt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852673	63852673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	160	528	0	ENST00000279873.7:c.3451G>A	p.Gly1151Arg	p.G1151R	ENST00000279873	NM_032199.2	1151	Gga/Aga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432086	121432086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	196	737	0	ENST00000257555.6:c.833G>A	p.Arg278Gln	p.R278Q	ENST00000257555		278	cGg/cAg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89352046	89352046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	255	1047	0	ENST00000301030.4:c.904G>A	p.Glu302Lys	p.E302K	ENST00000301030	NM_001256183.1	302	Gag/Aag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40491346	40491346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	196	707	0	ENST00000264657.5:c.454C>T	p.Arg152Trp	p.R152W	ENST00000264657	NM_139276.2	152	Cgg/Tgg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78599536	78599536	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	97	672	0	ENST00000306801.3:c.208G>C	p.Val70Leu	p.V70L	ENST00000306801	NM_020761.2	70	Gtg/Ctg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400191	41400191	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	106	398	0	ENST00000373198.4:c.569-1G>A		p.X190_splice	ENST00000373198	NM_133170.3	190																																																																															
NF2	4771	MSKCC	GRCh37	22	30054212	30054212	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	366	716	1	ENST00000338641.4:c.634C>T	p.Gln212Ter	p.Q212*	ENST00000338641	NM_000268.3	212	Cag/Tag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021671	31021671	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	75	312	0	ENST00000375687.4:c.1671del	p.Glu558LysfsTer145	p.E558Kfs*145	ENST00000375687	NM_015338.5	557	aCc/ac																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149510150	149510150	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	175	652	0	ENST00000261799.4:c.1319del	p.Gly440AlafsTer41	p.G440Afs*41	ENST00000261799	NM_002609.3	440	gGc/gc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468033	120468033	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	163	796	0	ENST00000256646.2:c.4406del	p.Pro1469HisfsTer84	p.P1469Hfs*84	ENST00000256646	NM_024408.3	1469	cCa/ca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521998	157521999	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	125	610	0	ENST00000346085.5:c.4270_4271delinsTT	p.Pro1424Leu	p.P1424L	ENST00000346085	NM_020732.3	1424	CCg/TTg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553707	106553708	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	121	438	0	ENST00000369096.4:c.1672_1673delinsAA	p.Gly558Asn	p.G558N	ENST00000369096	NM_001198.3	558	GGc/AAc																																																																														
KDR	3791	MSKCC	GRCh37	4	55948767	55948768	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	111	472	0	ENST00000263923.4:c.3697_3698delinsTT	p.Pro1233Phe	p.P1233F	ENST00000263923	NM_002253.2	1233	CCt/TTt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137785	64137785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	160	774	2	ENST00000334205.4:c.1886G>A	p.Arg629His	p.R629H	ENST00000334205	NM_003942.2	629	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	378	711	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735579	204735579	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	91	379	0	ENST00000302823.3:c.380A>G	p.Tyr127Cys	p.Y127C	ENST00000302823	NM_005214.4	127	tAc/tGc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012207	16012207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	62	418	0	ENST00000268712.3:c.2075A>T	p.Glu692Val	p.E692V	ENST00000268712	NM_006311.3	692	gAa/gTa																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66525112	66525112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	127	287	0	ENST00000358598.2:c.871G>T	p.Glu291Ter	p.E291*	ENST00000358598	NM_212471.2	291	Gag/Tag																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42843850	42843850	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	114	607	0	ENST00000398585.3:c.1069A>C	p.Met357Leu	p.M357L	ENST00000398585	NM_001135099.1	357	Atg/Ctg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971067	21971074	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCACCA	CAGCACCA	-			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	145	362	0	ENST00000304494.5:c.284_291del	p.Val95AlafsTer22	p.V95Afs*22	ENST00000304494	NM_000077.4	95	gTGGTGCTG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971067	21971074	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCACCA	CAGCACCA	-			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	145	362	0	ENST00000304494.5:c.284_291del	p.Val95AlafsTer22	p.V95Afs*22	ENST00000304494	NM_000077.4	95	gTGGTGCTG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971067	21971074	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCACCA	CAGCACCA	-			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	145	362	0	ENST00000304494.5:c.284_291del	p.Val95AlafsTer22	p.V95Afs*22	ENST00000304494	NM_000077.4	95	gTGGTGCTG/g																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098943	178098948	+	inframe_deletion	In_Frame_Del	DEL	TCGACT	TCGACT	-			P-0012241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	42	489	0	ENST00000397062.3:c.97_102del	p.Ser33_Arg34del	p.S33_R34del	ENST00000397062	NM_006164.4	33	AGTCGA/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0012247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	76	389	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	34	520	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	12	603	2	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	103	256	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	103	256	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610253	10610253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	27	680	0	ENST00000171111.5:c.457C>T	p.Leu153Phe	p.L153F	ENST00000171111	NM_203500.1	153	Ctc/Ttc																																																																														
CASP8	841	MSKCC	GRCh37	2	202151270	202151270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	20	620	0	ENST00000358485.4:c.1570C>T	p.Gln524Ter	p.Q524*	ENST00000358485	NM_001080125.1	524	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295230	1295230	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0012247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	70	310	0				ENST00000310581	NM_198253.2																																																																																
RPS6KA4	8986	MSKCC	GRCh37	11	64129160	64129160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	26	437	0	ENST00000334205.4:c.698C>A	p.Thr233Lys	p.T233K	ENST00000334205	NM_003942.2	233	aCg/aAg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58734152	58734152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	18	819	0	ENST00000305921.3:c.1210C>T	p.Gln404Ter	p.Q404*	ENST00000305921	NM_003620.3	404	Caa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739109	40739109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	11	372	0	ENST00000373198.4:c.3175C>T	p.Arg1059Trp	p.R1059W	ENST00000373198	NM_133170.3	1059	Cgg/Tgg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11168271	11168271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	81	564	0	ENST00000361445.4:c.7601C>T	p.Ser2534Phe	p.S2534F	ENST00000361445	NM_004958.3	2534	tCc/tTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190649	11190649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	89	604	1	ENST00000361445.4:c.5550G>T	p.Glu1850Asp	p.E1850D	ENST00000361445	NM_004958.3	1850	gaG/gaT																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076812	72076812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	79	462	0	ENST00000357731.5:c.685G>A	p.Glu229Lys	p.E229K	ENST00000357731	NM_173808.2	229	Gaa/Aaa																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733342	85733342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	180	905	0	ENST00000370580.1:c.670C>T	p.Pro224Ser	p.P224S	ENST00000370580	NM_003921.4	224	Ccc/Tcc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510712	120510712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	78	538	0	ENST00000256646.2:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000256646	NM_024408.3	418	Gaa/Aaa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731104	162731104	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	109	781	0	ENST00000367921.3:c.959T>C	p.Phe320Ser	p.F320S	ENST00000367921	NM_006182.2	320	tTc/tCc																																																																														
IL10	3586	MSKCC	GRCh37	1	206944290	206944290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	82	544	0	ENST00000423557.1:c.340G>A	p.Glu114Lys	p.E114K	ENST00000423557	NM_000572.2	114	Gag/Aag																																																																														
AKT3	10000	MSKCC	GRCh37	1	243800946	243800946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	78	537	0	ENST00000263826.5:c.528G>A	p.Met176Ile	p.M176I	ENST00000263826	NM_005465.4	176	atG/atA																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25978936	25978936	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	66	447	0	ENST00000435504.4:c.987T>A	p.Asn329Lys	p.N329K	ENST00000435504		329	aaT/aaA																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634710	158634710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	67	830	1	ENST00000263640.3:c.476C>T	p.Pro159Leu	p.P159L	ENST00000263640	NM_001105.4	159	cCc/cTc																																																																														
CASP8	841	MSKCC	GRCh37	2	202137456	202137456	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	32	451	0	ENST00000358485.4:c.684G>C	p.Lys228Asn	p.K228N	ENST00000358485	NM_001080125.1	228	aaG/aaC																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426738	212426738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	40	487	0	ENST00000342788.4:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000342788	NM_005235.2	793	Cag/Tag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663031	227663031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	32	439	0	ENST00000305123.5:c.424C>T	p.Leu142Phe	p.L142F	ENST00000305123	NM_005544.2	142	Ctt/Ttt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468516	89468516	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	78	356	0	ENST00000336596.2:c.2050C>T	p.Arg684Ter	p.R684*	ENST00000336596	NM_005233.5	684	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528591	89528591	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	70	422	0	ENST00000336596.2:c.2891A>T	p.Lys964Met	p.K964M	ENST00000336596	NM_005233.5	964	aAg/aTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968180	134968180	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	117	580	0	ENST00000398015.3:c.2693C>A	p.Pro898His	p.P898H	ENST00000398015	NM_004441.4	898	cCt/cAt																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665083	182665083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	56	600	0	ENST00000292782.4:c.643C>T	p.Leu215Phe	p.L215F	ENST00000292782	NM_020640.2	215	Ctt/Ttt																																																																														
BCL6	604	MSKCC	GRCh37	3	187446273	187446273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	99	396	0	ENST00000232014.4:c.1415C>T	p.Pro472Leu	p.P472L	ENST00000232014	NM_001130845.1	472	cCc/cTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55946137	55946137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	79	538	0	ENST00000263923.4:c.4042G>A	p.Gly1348Arg	p.G1348R	ENST00000263923	NM_002253.2	1348	Ggg/Agg																																																																														
KDR	3791	MSKCC	GRCh37	4	55981166	55981166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	58	580	0	ENST00000263923.4:c.533C>T	p.Ser178Phe	p.S178F	ENST00000263923	NM_002253.2	178	tCc/tTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286179	66286179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	87	544	0	ENST00000273854.3:c.1507G>A	p.Glu503Lys	p.E503K	ENST00000273854	NM_004439.5	503	Gaa/Aaa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007331	143007331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	38	350	0	ENST00000262992.4:c.2453G>A	p.Arg818Lys	p.R818K	ENST00000262992	NM_001101669.1	818	aGa/aAa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143114250	143114250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	50	537	1	ENST00000262992.4:c.1171G>A	p.Glu391Lys	p.E391K	ENST00000262992	NM_001101669.1	391	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540784	187540784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	62	446	0	ENST00000441802.2:c.6956C>T	p.Ser2319Leu	p.S2319L	ENST00000441802	NM_005245.3	2319	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	29	226	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38982010	38982010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	57	399	0	ENST00000357387.3:c.712C>T	p.Pro238Ser	p.P238S	ENST00000357387	NM_152756.3	238	Cca/Tca																																																																														
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	42	275	0	ENST00000257430.4:c.4634C>T	p.Ser1545Leu	p.S1545L	ENST00000257430	NM_000038.5	1545	tCa/tTa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058731	180058731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	45	500	1	ENST00000261937.6:c.106G>A	p.Glu36Lys	p.E36K	ENST00000261937	NM_182925.4	36	Gag/Aag																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288203	33288203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	79	438	0	ENST00000374542.5:c.1205C>T	p.Ser402Phe	p.S402F	ENST00000374542	NM_001141970.1	402	tCt/tTt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120701	94120701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	168	923	1	ENST00000369303.4:c.350G>A	p.Gly117Glu	p.G117E	ENST00000369303	NM_004440.3	117	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658372	117658372	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	144	794	1	ENST00000368508.3:c.5211A>T	p.Glu1737Asp	p.E1737D	ENST00000368508	NM_002944.2	1737	gaA/gaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686839	117686839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	33	494	0	ENST00000368508.3:c.2878G>A	p.Gly960Arg	p.G960R	ENST00000368508	NM_002944.2	960	Gga/Aga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710834	117710834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	126	608	0	ENST00000368508.3:c.1438A>G	p.Thr480Ala	p.T480A	ENST00000368508	NM_002944.2	480	Aca/Gca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959220	2959220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	103	563	0	ENST00000396946.4:c.2296G>A	p.Glu766Lys	p.E766K	ENST00000396946	NM_032415.4	766	Gag/Aag																																																																														
PMS2	5395	MSKCC	GRCh37	7	6031637	6031637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	52	345	0	ENST00000265849.7:c.955C>T	p.Pro319Ser	p.P319S	ENST00000265849	NM_000535.5	319	Cca/Tca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55272964	55272964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	49	434	0	ENST00000275493.2:c.3287C>T	p.Ser1096Phe	p.S1096F	ENST00000275493	NM_005228.3	1096	tCc/tTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81388011	81388011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	70	572	0	ENST00000222390.5:c.364A>G	p.Lys122Glu	p.K122E	ENST00000222390	NM_000601.4	122	Aaa/Gaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508631	106508631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	41	377	0	ENST00000359195.3:c.625G>A	p.Glu209Lys	p.E209K	ENST00000359195	NM_002649.2	209	Gag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116403149	116403150	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	40	348	1	ENST00000397752.3:c.2410_2411delinsTT	p.Pro804Phe	p.P804F	ENST00000397752	NM_000245.2	804	CCt/TTt																																																																														
MET	4233	MSKCC	GRCh37	7	116418866	116418867	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	53	441	0	ENST00000397752.3:c.3377_3378delinsTT	p.Thr1126Ile	p.T1126I	ENST00000397752	NM_000245.2	1126	aCC/aTT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151876952	151876952	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	49	465	0	ENST00000262189.6:c.7409T>C	p.Val2470Ala	p.V2470A	ENST00000262189	NM_170606.2	2470	gTt/gCt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372491	55372491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	80	594	1	ENST00000297316.4:c.1181C>T	p.Ala394Val	p.A394V	ENST00000297316	NM_022454.3	394	gCc/gTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504281	8504281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	60	384	0	ENST00000356435.5:c.1802C>T	p.Ser601Leu	p.S601L	ENST00000356435		601	tCa/tTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	58	383	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	58	383	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98244479	98244480	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	39	303	0	ENST00000331920.6:c.590_591delinsAA	p.Trp197Ter	p.W197*	ENST00000331920	NM_000264.3	197	tGG/tAA																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912061	127912061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	125	781	1	ENST00000373547.4:c.809C>T	p.Ser270Leu	p.S270L	ENST00000373547	NM_002721.4	270	tCg/tTg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870826	12870826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	43	202	0	ENST00000228872.4:c.53C>T	p.Ala18Val	p.A18V	ENST00000228872	NM_004064.3	18	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432459	49432459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	81	734	1	ENST00000301067.7:c.8680C>T	p.Pro2894Ser	p.P2894S	ENST00000301067	NM_003482.3	2894	Ccg/Tcg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481857	56481857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	80	643	0	ENST00000267101.3:c.785C>T	p.Pro262Leu	p.P262L	ENST00000267101	NM_001982.3	262	cCt/cTt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856190	111856190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	27	368	0	ENST00000341259.2:c.241G>A	p.Asp81Asn	p.D81N	ENST00000341259	NM_005475.2	81	Gac/Aac																																																																														
POLE	5426	MSKCC	GRCh37	12	133220545	133220545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	28	323	0	ENST00000320574.5:c.4168C>T	p.Arg1390Cys	p.R1390C	ENST00000320574	NM_006231.2	1390	Cgc/Tgc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557570	21557570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	83	608	1	ENST00000382592.4:c.2275C>T	p.Arg759Trp	p.R759W	ENST00000382592	NM_014572.2	759	Cgg/Tgg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557740	21557740	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	107	621	1	ENST00000382592.4:c.2105A>T	p.Lys702Met	p.K702M	ENST00000382592	NM_014572.2	702	aAg/aTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950923	32950923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	58	384	0	ENST00000380152.3:c.8749C>T	p.Leu2917Phe	p.L2917F	ENST00000380152		2917	Ctt/Ttt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2122905	2122905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	73	638	0	ENST00000219476.3:c.2276G>A	p.Arg759Lys	p.R759K	ENST00000219476	NM_000548.3	759	aGa/aAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857865	9857865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	91	590	0	ENST00000330684.3:c.3536C>T	p.Ser1179Phe	p.S1179F	ENST00000330684	NM_001134407.1	1179	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858097	9858097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	119	671	0	ENST00000330684.3:c.3304G>A	p.Glu1102Lys	p.E1102K	ENST00000330684	NM_001134407.1	1102	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858428	9858429	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	61	584	0	ENST00000330684.3:c.2972_2973delinsTT	p.Ser991Phe	p.S991F	ENST00000330684	NM_001134407.1	991	tCC/tTT																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641169	23641169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	63	459	0	ENST00000261584.4:c.2306T>C	p.Leu769Pro	p.L769P	ENST00000261584	NM_024675.3	769	cTt/cCt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641758	23641758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	45	392	1	ENST00000261584.4:c.1717C>T	p.Leu573Phe	p.L573F	ENST00000261584	NM_024675.3	573	Ctt/Ttt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827964	72827964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	102	998	1	ENST00000268489.5:c.8617G>A	p.Glu2873Lys	p.E2873K	ENST00000268489	NM_006885.3	2873	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829383	72829383	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	113	919	1	ENST00000268489.5:c.7198A>T	p.Asn2400Tyr	p.N2400Y	ENST00000268489	NM_006885.3	2400	Aat/Tat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831852	72831853	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	133	1061	1	ENST00000268489.5:c.4728_4729delinsTT	p.Leu1577Phe	p.L1577F	ENST00000268489	NM_006885.3	1576	gcCCtt/gcTTtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	46	408	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577143	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	56	648	0	ENST00000269305.4:c.795_796delinsAA	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	265	ctGGga/ctAAga																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980495	7980495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	57	448	0	ENST00000319144.4:c.1088G>A	p.Gly363Glu	p.G363E	ENST00000319144	NM_001139.2	363	gGg/gAg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16056660	16056660	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	45	579	0	ENST00000268712.3:c.782T>C	p.Val261Ala	p.V261A	ENST00000268712	NM_006311.3	261	gTt/gCt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17124889	17124889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	43	499	0	ENST00000285071.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000285071	NM_144997.5	278	cCg/cTg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30302675	30302675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	21	215	0	ENST00000322652.5:c.766C>T	p.Arg256Cys	p.R256C	ENST00000322652	NM_015355.2	256	Cgt/Tgt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41228592	41228592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	48	562	0	ENST00000357654.3:c.4397G>T	p.Ser1466Ile	p.S1466I	ENST00000357654	NM_007294.3	1466	aGc/aTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440903	56440903	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151209912		P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	89	559	1	ENST00000407977.2:c.434G>A	p.Arg145Gln	p.R145Q	ENST00000407977		145	cGa/cAa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936356	78936356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	63	506	0	ENST00000306801.3:c.3788C>T	p.Pro1263Leu	p.P1263L	ENST00000306801	NM_020761.2	1263	cCc/cTc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1632377	1632377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	84	696	0	ENST00000344749.5:c.173C>T	p.Ser58Phe	p.S58F	ENST00000344749	NM_001136139.2	58	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221165	5221165	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	73	555	0	ENST00000357368.4:c.3301A>C	p.Asn1101His	p.N1101H	ENST00000357368	NM_002850.3	1101	Aat/Cat																																																																														
INSR	3643	MSKCC	GRCh37	19	7120695	7120695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	82	684	0	ENST00000302850.5:c.3595C>T	p.Pro1199Ser	p.P1199S	ENST00000302850	NM_000208.2	1199	Cct/Tct																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145605	11145605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	36	314	0	ENST00000344626.4:c.3967C>T	p.Arg1323Cys	p.R1323C	ENST00000344626	NM_003072.3	1323	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302860	15302860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	47	371	0	ENST00000263388.2:c.590C>T	p.Pro197Leu	p.P197L	ENST00000263388	NM_000435.2	197	cCc/cTc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273811	18273811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	91	677	1	ENST00000222254.8:c.1144C>T	p.His382Tyr	p.H382Y	ENST00000222254	NM_005027.3	382	Cac/Tac																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021250	31021250	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	43	413	0	ENST00000375687.4:c.1249C>T	p.Arg417Ter	p.R417*	ENST00000375687	NM_015338.5	417	Cga/Tga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485823	57485823	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	101	485	0	ENST00000371085.3:c.1124T>G	p.Val375Gly	p.V375G	ENST00000371085	NM_000516.4	375	gTg/gGg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42860422	42860422	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs142988104		P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	34	481	0	ENST00000398585.3:c.455A>G	p.Asn152Ser	p.N152S	ENST00000398585	NM_001135099.1	152	aAc/aGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41533689	41533690	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	76	557	0	ENST00000263253.7:c.1655_1656delinsTT	p.Ser552Phe	p.S552F	ENST00000263253	NM_001429.3	552	tCC/tTT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	533	604	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	187	448	0				ENST00000310581	NM_198253.2																																																																																
TNFRSF14	8764	MSKCC	GRCh37	1	2493144	2493144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	303	692	0	ENST00000355716.4:c.584G>A	p.Gly195Glu	p.G195E	ENST00000355716	NM_003820.2	195	gGg/gAg																																																																														
MST1	4485	MSKCC	GRCh37	3	49725304	49725304	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	200	497	0	ENST00000449682.2:c.121C>T	p.Gln41Ter	p.Q41*	ENST00000449682	NM_020998.3	41	Caa/Taa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859812	117859812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	962	1011	0	ENST00000297338.2:c.1823C>G	p.Ala608Gly	p.A608G	ENST00000297338	NM_006265.2	608	gCt/gGt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850952	63850952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	302	634	0	ENST00000279873.7:c.1730C>T	p.Ser577Phe	p.S577F	ENST00000279873	NM_032199.2	577	tCc/tTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964193	28964193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	242	583	0	ENST00000282397.4:c.1709G>A	p.Gly570Glu	p.G570E	ENST00000282397	NM_002019.4	570	gGa/gAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351092	89351092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	465	1088	1	ENST00000301030.4:c.1858C>T	p.Pro620Ser	p.P620S	ENST00000301030	NM_001256183.1	620	Ccc/Tcc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40447644	40447644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	461	950	0	ENST00000345506.4:c.383C>T	p.Ser128Phe	p.S128F	ENST00000345506	NM_003152.3	128	tCt/tTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226479	41226479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	369	787	1	ENST00000357654.3:c.4544G>A	p.Gly1515Glu	p.G1515E	ENST00000357654	NM_007294.3	1515	gGg/gAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373502	118373537	+	inframe_deletion	In_Frame_Del	DEL	TTGGTGTCCAAGAGCTCCTCTTTAAAGGGAGAGAAG	TTGGTGTCCAAGAGCTCCTCTTTAAAGGGAGAGAAG	-			P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	51	640	0	ENST00000534358.1:c.6895_6930del	p.Leu2299_Lys2310del	p.L2299_K2310del	ENST00000534358	NM_005933.3	2299	TTGGTGTCCAAGAGCTCCTCTTTAAAGGGAGAGAAG/-																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373541	118373541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	46	659	0	ENST00000534358.1:c.6936del	p.Val2313CysfsTer2	p.V2313Cfs*2	ENST00000534358	NM_005933.3	2312	Aaa/aa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852273	63852274	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	216	522	0	ENST00000279873.7:c.3051_3052delinsAA	p.Asp1018Asn	p.D1018N	ENST00000279873	NM_032199.2	1017	gaGGat/gaAAat																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9770535	9770536	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	331	813	0	ENST00000377346.4:c.22_23delinsTT	p.Pro8Phe	p.P8F	ENST00000377346	NM_005026.3	8	CCc/TTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	106	616	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812293	212812293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	67	452	3	ENST00000342788.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000342788	NM_005235.2	95	Cgt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	83	441	1	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576891	7576891	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	83	451	1	ENST00000269305.4:c.955A>T	p.Lys319Ter	p.K319*	ENST00000269305	NM_001126112.2	319	Aag/Tag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017196	31017196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	85	519	0	ENST00000375687.4:c.527C>T	p.Pro176Leu	p.P176L	ENST00000375687	NM_015338.5	176	cCt/cTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211536	46211536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	63	544	0	ENST00000334344.6:c.502G>A	p.Gly168Arg	p.G168R	ENST00000334344	NM_152641.2	168	Gga/Aga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120478229	120478229	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	56	309	0	ENST00000256646.2:c.3523-2A>T		p.X1175_splice	ENST00000256646	NM_024408.3	1175																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178938922	178938922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	23	192	0	ENST00000263967.3:c.2164G>A	p.Glu722Lys	p.E722K	ENST00000263967	NM_006218.2	722	Gag/Aag																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182681834	182681834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	57	360	0	ENST00000292782.4:c.224C>T	p.Pro75Leu	p.P75L	ENST00000292782	NM_020640.2	75	cCt/cTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630852	187630852	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	123	598	1	ENST00000441802.2:c.130C>T	p.Gln44Ter	p.Q44*	ENST00000441802	NM_005245.3	44	Cag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502208	157502208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	91	374	0	ENST00000346085.5:c.3241G>A	p.Glu1081Lys	p.E1081K	ENST00000346085	NM_020732.3	1081	Gaa/Aaa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739828	41739828	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	126	754	0	ENST00000242208.4:c.145A>G	p.Asn49Asp	p.N49D	ENST00000242208	NM_002192.2	49	Aac/Gac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845727	151845727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	100	585	0	ENST00000262189.6:c.13285C>T	p.His4429Tyr	p.H4429Y	ENST00000262189	NM_170606.2	4429	Cac/Tac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402743	139402743	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	78	370	0	ENST00000277541.6:c.3266G>A	p.Trp1089Ter	p.W1089*	ENST00000277541	NM_017617.3	1089	tGg/tAg																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518116	69518116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	100	536	0	ENST00000294312.3:c.249G>T	p.Lys83Asn	p.K83N	ENST00000294312	NM_005117.2	83	aaG/aaT																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518124	69518124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	100	498	0	ENST00000294312.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000294312	NM_005117.2	81	Gag/Aag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562634	21562634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	23	141	0	ENST00000382592.4:c.1285C>T	p.Pro429Ser	p.P429S	ENST00000382592	NM_014572.2	429	Ccc/Tcc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66679692	66679692	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	100	549	1	ENST00000307102.5:c.7A>T	p.Lys3Ter	p.K3*	ENST00000307102	NM_002755.3	3	Aag/Tag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99486244	99486244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	74	479	0	ENST00000268035.6:c.3550C>T	p.Leu1184Phe	p.L1184F	ENST00000268035	NM_000875.3	1184	Ctc/Ttc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858163	9858163	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	114	645	0	ENST00000330684.3:c.3238C>A	p.His1080Asn	p.H1080N	ENST00000330684	NM_001134407.1	1080	Cac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993368	72993368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1250	131	843	1	ENST00000268489.5:c.677C>T	p.Pro226Leu	p.P226L	ENST00000268489	NM_006885.3	226	cCc/cTc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462598	40462598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1306	130	761	2	ENST00000345506.4:c.2296G>A	p.Glu766Lys	p.E766K	ENST00000345506	NM_003152.3	766	Gaa/Aaa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696381	47696381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	67	453	1	ENST00000347630.2:c.442G>A	p.Gly148Arg	p.G148R	ENST00000347630	NM_001007230.1	148	Ggg/Agg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017764	31017764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	74	413	0	ENST00000375687.4:c.626C>T	p.Ser209Phe	p.S209F	ENST00000375687	NM_015338.5	209	tCt/tTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510216	187510217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCGATGTCGTAGCCTCCAGGGTAATAGTCCG			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	55	508	0	ENST00000441802.2:c.13265_13296dup	p.Ser4433ArgfsTer65	p.S4433Rfs*65	ENST00000441802	NM_005245.3	4432	-/CGGACTATTACCCTGGAGGCTACGACATCGAA																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870972	12870973	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	68	375	0	ENST00000228872.4:c.201_202del	p.His67GlnfsTer57	p.H67Qfs*57	ENST00000228872	NM_004064.3	67	CAc/c																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123836	46123837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	45	218	0	ENST00000334344.6:c.109dupA	p.Ile37AsnfsTer29	p.I37Nfs*29	ENST00000334344	NM_152641.2	34	-/A																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288503	15288504	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	35	123	0	ENST00000263388.2:c.4235_4236delinsAA	p.Trp1412Ter	p.W1412*	ENST00000263388	NM_000435.2	1412	tGG/tAA																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347968	89347969	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1399	127	844	0	ENST00000301030.4:c.4981_4982delinsTT	p.Pro1661Leu	p.P1661L	ENST00000301030	NM_001256183.1	1661	CCa/TTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413064	139413066	+	frameshift_variant	Frame_Shift_Del	DEL	CGC	CGC	TG			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	61	476	0	ENST00000277541.6:c.1076_1078delinsCA	p.Cys359SerfsTer272	p.C359Sfs*272	ENST00000277541	NM_017617.3	359	tGCGag/tCAag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971179	21971181	+	missense_variant	Missense_Mutation	ONP	GCC	GCC	TTT			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	17	135	0	ENST00000304494.5:c.177_179delinsAAA	p.Ala60Lys	p.A60K	ENST00000304494	NM_000077.4	59	gtGGCg/gtAAAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971179	21971181	+	missense_variant	Missense_Mutation	ONP	GCC	GCC	TTT			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	17	135	0	ENST00000304494.5:c.177_179delinsAAA	p.Ala60Lys	p.A60K	ENST00000304494	NM_000077.4	59	gtGGCg/gtAAAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971179	21971181	+	missense_variant	Missense_Mutation	ONP	GCC	GCC	TTT			P-0012333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	19	133	1	ENST00000304494.5:c.177_179delinsAAA	p.Ala60Lys	p.A60K	ENST00000304494	NM_000077.4	59	gtGGCg/gtAAAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	334	660	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	47	249	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	247	850	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	126	360	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	126	360	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	126	360	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248677	10248677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	47	452	1	ENST00000340748.4:c.4076C>T	p.Ser1359Leu	p.S1359L	ENST00000340748		1359	tCg/tTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41513437	41513437	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	93	766	0	ENST00000263253.7:c.341G>C	p.Gly114Ala	p.G114A	ENST00000263253	NM_001429.3	114	gGa/gCa																																																																														
MED12	9968	MSKCC	GRCh37	X	70352735	70352735	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	275	1139	0	ENST00000374080.3:c.4456C>G	p.Leu1486Val	p.L1486V	ENST00000374080		1486	Cta/Gta																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470573	25470573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	74	651	1	ENST00000264709.3:c.901C>T	p.Arg301Trp	p.R301W	ENST00000264709	NM_175629.2	301	Cgg/Tgg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30321697	30321697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	87	688	0	ENST00000322652.5:c.1552G>A	p.Gly518Arg	p.G518R	ENST00000322652	NM_015355.2	518	Gga/Aga																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552891	106552891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1240	96	903	4	ENST00000369096.4:c.856C>T	p.Arg286Cys	p.R286C	ENST00000369096	NM_001198.3	286	Cgt/Tgt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317111	87317111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	80	529	0	ENST00000277120.3:c.250G>A	p.Glu84Lys	p.E84K	ENST00000277120		84	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157132	106157132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	58	564	1	ENST00000380013.4:c.2033G>A	p.Gly678Asp	p.G678D	ENST00000380013	NM_001127208.2	678	gGc/gAc																																																																														
ATM	472	MSKCC	GRCh37	11	108175528	108175528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	71	552	1	ENST00000278616.4:c.5623C>T	p.Arg1875Ter	p.R1875*	ENST00000278616	NM_000051.3	1875	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	48	371	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126157	2126157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	98	648	2	ENST00000219476.3:c.2728C>T	p.Pro910Ser	p.P910S	ENST00000219476	NM_000548.3	910	Cct/Tct																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432068	121432068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	71	705	1	ENST00000257555.6:c.815G>A	p.Arg272His	p.R272H	ENST00000257555		272	cGc/cAc																																																																														
AXL	558	MSKCC	GRCh37	19	41743883	41743883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	104	791	3	ENST00000301178.4:c.818C>T	p.Ala273Val	p.A273V	ENST00000301178	NM_021913.4	273	gCg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	71	589	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303028	15303028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	52	411	1	ENST00000263388.2:c.422G>A	p.Arg141His	p.R141H	ENST00000263388	NM_000435.2	141	cGc/cAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121076	11121076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	70	657	1	ENST00000344626.4:c.2143G>A	p.Asp715Asn	p.D715N	ENST00000344626	NM_003072.3	715	Gat/Aat																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289271	33289271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	59	463	1	ENST00000374542.5:c.281G>A	p.Arg94His	p.R94H	ENST00000374542	NM_001141970.1	94	cGt/cAt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15950396	15950396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201721277		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	65	645	0	ENST00000268712.3:c.6548G>A	p.Arg2183His	p.R2183H	ENST00000268712	NM_006311.3	2183	cGc/cAc																																																																														
TP63	8626	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	74	605	0	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001366	29001366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	73	529	1	ENST00000282397.4:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000282397	NM_002019.4	456	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	145	1089	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933151	39933151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	62	699	0	ENST00000378444.4:c.1448C>T	p.Pro483Leu	p.P483L	ENST00000378444	NM_001123385.1	483	cCg/cTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16247377	16247377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	47	357	1	ENST00000375759.3:c.1648C>T	p.Arg550Cys	p.R550C	ENST00000375759	NM_015001.2	550	Cgc/Tgc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740215	162740215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	60	581	0	ENST00000367921.3:c.1417C>T	p.Arg473Cys	p.R473C	ENST00000367921	NM_006182.2	473	Cgc/Tgc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28597507	28597507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	86	693	0	ENST00000241453.7:c.2398G>A	p.Glu800Lys	p.E800K	ENST00000241453	NM_004119.2	800	Gaa/Aaa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430668	80430668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	43	361	0	ENST00000286548.4:c.340C>T	p.Arg114Ter	p.R114*	ENST00000286548	NM_002072.3	114	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	77	593	1	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
NF1	4763	MSKCC	GRCh37	17	29528141	29528141	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	110	713	0	ENST00000358273.4:c.1149C>A	p.Cys383Ter	p.C383*	ENST00000358273	NM_001042492.2	383	tgC/tgA																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132552	11132552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	81	646	1	ENST00000344626.4:c.2768C>T	p.Ala923Val	p.A923V	ENST00000344626	NM_003072.3	923	gCg/gTg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164440	36164440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	27	135	0	ENST00000300305.3:c.1435C>T	p.Pro479Ser	p.P479S	ENST00000300305		479	Ccc/Tcc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797890	45797890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146044717		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	54	646	1	ENST00000372115.3:c.839G>A	p.Arg280His	p.R280H	ENST00000372115	NM_001048171.1	280	cGc/cAc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876230	35876230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	55	563	3	ENST00000303115.3:c.1022G>T	p.Gly341Val	p.G341V	ENST00000303115	NM_002185.3	341	gGa/gTa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028632	12028632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	70	624	1	ENST00000353533.5:c.835G>A	p.Ala279Thr	p.A279T	ENST00000353533	NM_003010.3	279	Gca/Aca																																																																														
EP300	2033	MSKCC	GRCh37	22	41566522	41566522	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	101	730	0	ENST00000263253.7:c.4399T>C	p.Tyr1467His	p.Y1467H	ENST00000263253	NM_001429.3	1467	Tac/Cac																																																																														
AR	367	MSKCC	GRCh37	X	66937326	66937326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	80	740	4	ENST00000374690.3:c.2180G>A	p.Arg727His	p.R727H	ENST00000374690	NM_000044.3	727	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101353	27101353	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	82	666	0	ENST00000324856.7:c.4635G>A	p.Trp1545Ter	p.W1545*	ENST00000324856	NM_006015.4	1545	tgG/tgA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280068	66280068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	56	631	0	ENST00000273854.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000273854	NM_004439.5	541	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405905	157405905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	58	515	0	ENST00000346085.5:c.2147C>T	p.Ala716Val	p.A716V	ENST00000346085	NM_020732.3	716	gCg/gTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520087	106520087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	55	395	0	ENST00000359195.3:c.2515C>T	p.Arg839Cys	p.R839C	ENST00000359195	NM_002649.2	839	Cgc/Tgc																																																																														
IRF4	3662	MSKCC	GRCh37	6	393357	393357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	54	449	1	ENST00000380956.4:c.205G>A	p.Ala69Thr	p.A69T	ENST00000380956	NM_001195286.1	69	Gcg/Acg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350291	15350291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	81	664	1	ENST00000263377.2:c.3488G>A	p.Arg1163Gln	p.R1163Q	ENST00000263377	NM_058243.2	1163	cGg/cAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29654553	29654553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	71	587	2	ENST00000358273.4:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000358273	NM_001042492.2	1769	Cga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123182928	123182928	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	75	631	0	ENST00000218089.9:c.893G>A	p.Arg298His	p.R298H	ENST00000218089	NM_001042749.1	298	cGt/cAt																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022390	12022390	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142603082		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1280	78	914	1	ENST00000396373.4:c.496G>A	p.Val166Met	p.V166M	ENST00000396373	NM_001987.4	166	Gtg/Atg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671451	30671451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	97	753	0	ENST00000376406.3:c.5509G>A	p.Val1837Met	p.V1837M	ENST00000376406	NM_014641.2	1837	Gtg/Atg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674234	86674234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	40	384	0	ENST00000274376.6:c.2366G>A	p.Arg789Gln	p.R789Q	ENST00000274376	NM_002890.2	789	cGa/cAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435777	56435777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1055597951		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	36	340	1	ENST00000407977.2:c.1360C>T	p.Arg454Cys	p.R454C	ENST00000407977		454	Cgc/Tgc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81939042	81939042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	96	981	0	ENST00000359376.3:c.1397T>C	p.Val466Ala	p.V466A	ENST00000359376	NM_002661.3	466	gTc/gCc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289660	33289660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	50	508	0	ENST00000374542.5:c.43G>A	p.Glu15Lys	p.E15K	ENST00000374542	NM_001141970.1	15	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106156729	106156729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	64	555	0	ENST00000380013.4:c.1630C>T	p.Arg544Ter	p.R544*	ENST00000380013	NM_001127208.2	544	Cga/Tga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346918	89346918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	40	481	0	ENST00000301030.4:c.6032C>T	p.Ser2011Leu	p.S2011L	ENST00000301030	NM_001256183.1	2011	tCg/tTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760559	133760559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	104	754	4	ENST00000318560.5:c.2882C>T	p.Pro961Leu	p.P961L	ENST00000318560	NM_005157.4	961	cCg/cTg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181425	185181425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1435276633		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	58	668	1	ENST00000265026.3:c.1366C>T	p.Arg456Ter	p.R456*	ENST00000265026	NM_004721.4	456	Cga/Tga																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775729	9775729	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	74	578	0	ENST00000377346.4:c.272A>G	p.Asp91Gly	p.D91G	ENST00000377346	NM_005026.3	91	gAc/gGc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780939	9780939	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	65	611	0	ENST00000377346.4:c.1661A>G	p.Lys554Arg	p.K554R	ENST00000377346	NM_005026.3	554	aAg/aGg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190608	11190608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	61	569	0	ENST00000361445.4:c.5591C>T	p.Pro1864Leu	p.P1864L	ENST00000361445	NM_004958.3	1864	cCg/cTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11307730	11307730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1087	75	606	2	ENST00000361445.4:c.1177C>A	p.Leu393Ile	p.L393I	ENST00000361445	NM_004958.3	393	Ctt/Att																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202870	16202870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	94	650	0	ENST00000375759.3:c.578G>A	p.Arg193His	p.R193H	ENST00000375759	NM_015001.2	193	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255940	16255940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	35	371	0	ENST00000375759.3:c.3205C>A	p.Leu1069Ile	p.L1069I	ENST00000375759	NM_015001.2	1069	Ctt/Att																																																																														
ID3	3399	MSKCC	GRCh37	1	23885861	23885861	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	96	755	0	ENST00000374561.5:c.57A>C	p.Glu19Asp	p.E19D	ENST00000374561	NM_002167.4	19	gaA/gaC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089641	27089641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	73	612	0	ENST00000324856.7:c.2597G>A	p.Arg866Gln	p.R866Q	ENST00000324856	NM_006015.4	866	cGg/cAg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156837904	156837904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41267427		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	71	618	0	ENST00000524377.1:c.437C>T	p.Ser146Leu	p.S146L	ENST00000524377	NM_002529.3	146	tCg/tTg																																																																														
PARP1	142	MSKCC	GRCh37	1	226552710	226552710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	87	429	0	ENST00000366794.5:c.2651C>T	p.Ala884Val	p.A884V	ENST00000366794	NM_001618.3	884	gCg/gTg																																																																														
FH	2271	MSKCC	GRCh37	1	241675374	241675374	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	74	770	0	ENST00000366560.3:c.448A>C	p.Asn150His	p.N150H	ENST00000366560	NM_000143.3	150	Aat/Cat																																																																														
FH	2271	MSKCC	GRCh37	1	241675399	241675399	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	66	698	2	ENST00000366560.3:c.423G>A	p.Trp141Ter	p.W141*	ENST00000366560	NM_000143.3	141	tgG/tgA																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716177	243716177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	78	648	1	ENST00000263826.5:c.1017G>T	p.Met339Ile	p.M339I	ENST00000263826	NM_005465.4	339	atG/atT																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25462062	25462062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	66	543	0	ENST00000264709.3:c.2345C>T	p.Ala782Val	p.A782V	ENST00000264709	NM_175629.2	782	gCc/gTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463209	25463209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	88	653	1	ENST00000264709.3:c.2284G>A	p.Gly762Ser	p.G762S	ENST00000264709	NM_175629.2	762	Ggc/Agc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523072	25523072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	92	637	0	ENST00000264709.3:c.113G>A	p.Arg38His	p.R38H	ENST00000264709	NM_175629.2	38	cGc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026437	48026437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	85	664	1	ENST00000234420.5:c.1315G>A	p.Asp439Asn	p.D439N	ENST00000234420	NM_000179.2	439	Gat/Aat																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027511	48027511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	62	367	0	ENST00000234420.5:c.2389G>T	p.Asp797Tyr	p.D797Y	ENST00000234420	NM_000179.2	797	Gac/Tac																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719525	61719525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	78	614	2	ENST00000401558.2:c.1658G>A	p.Arg553His	p.R553H	ENST00000401558	NM_003400.3	553	cGt/cAt																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907726	111907726	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	101	734	0	ENST00000393256.3:c.498+2T>C		p.X166_splice	ENST00000393256	NM_006538.4	166																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128050319	128050319	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	75	623	0	ENST00000285398.2:c.338T>C	p.Val113Ala	p.V113A	ENST00000285398	NM_000122.1	113	gTg/gCg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158627021	158627021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	95	758	0	ENST00000263640.3:c.649G>T	p.Gly217Cys	p.G217C	ENST00000263640	NM_001105.4	217	Ggc/Tgc																																																																														
CASP8	841	MSKCC	GRCh37	2	202136245	202136245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	73	636	0	ENST00000358485.4:c.489G>A	p.Met163Ile	p.M163I	ENST00000358485	NM_001080125.1	163	atG/atA																																																																														
CASP8	841	MSKCC	GRCh37	2	202137422	202137422	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	43	500	0	ENST00000358485.4:c.650A>G	p.Asp217Gly	p.D217G	ENST00000358485	NM_001080125.1	217	gAc/gGc																																																																														
CASP8	841	MSKCC	GRCh37	2	202149658	202149658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	65	651	2	ENST00000358485.4:c.1099G>T	p.Asp367Tyr	p.D367Y	ENST00000358485	NM_001080125.1	367	Gac/Tac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495213	212495213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	60	591	0	ENST00000342788.4:c.2053G>A	p.Ala685Thr	p.A685T	ENST00000342788	NM_005235.2	685	Gcc/Acc																																																																														
BARD1	580	MSKCC	GRCh37	2	215645780	215645780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	69	668	1	ENST00000260947.4:c.818G>A	p.Gly273Glu	p.G273E	ENST00000260947	NM_000465.2	273	gGa/gAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275669	41275669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	70	593	4	ENST00000349496.5:c.1564G>A	p.Ala522Thr	p.A522T	ENST00000349496	NM_001904.3	522	Gca/Aca																																																																														
MST1	4485	MSKCC	GRCh37	3	49723149	49723149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	97	700	2	ENST00000449682.2:c.1267G>A	p.Glu423Lys	p.E423K	ENST00000449682	NM_020998.3	423	Gaa/Aaa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438525	52438525	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	74	598	0	ENST00000460680.1:c.1194G>T	p.Glu398Asp	p.E398D	ENST00000460680	NM_004656.3	398	gaG/gaT																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021790	71021790	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	77	628	0	ENST00000318789.4:c.1568T>G	p.Phe523Cys	p.F523C	ENST00000318789	NM_032682.5	523	tTt/tGt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259089	89259089	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	43	475	0	ENST00000336596.2:c.233A>G	p.Gln78Arg	p.Q78R	ENST00000336596	NM_005233.5	78	cAa/cGa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390072	89390072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	56	530	1	ENST00000336596.2:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000336596	NM_005233.5	274	cGa/cAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462305	89462305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	43	439	1	ENST00000336596.2:c.1777C>T	p.Leu593Phe	p.L593F	ENST00000336596	NM_005233.5	593	Ctc/Ttc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498447	89498447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	66	606	0	ENST00000336596.2:c.2419G>A	p.Val807Ile	p.V807I	ENST00000336596	NM_005233.5	807	Gta/Ata																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205721	128205721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	79	751	0	ENST00000341105.2:c.154C>A	p.Leu52Ile	p.L52I	ENST00000341105	NM_032638.4	52	Ctc/Atc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134977925	134977925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	92	779	2	ENST00000398015.3:c.2918G>T	p.Arg973Met	p.R973M	ENST00000398015	NM_004441.4	973	aGg/aTg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138456643	138456643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	87	814	2	ENST00000289153.2:c.707G>A	p.Gly236Glu	p.G236E	ENST00000289153	NM_006219.2	236	gGg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947119	178947119	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199943173		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	81	548	1	ENST00000263967.3:c.2555G>A	p.Arg852Gln	p.R852Q	ENST00000263967	NM_006218.2	852	cGa/cAa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185183609	185183609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	79	601	0	ENST00000265026.3:c.1463C>T	p.Ala488Val	p.A488V	ENST00000265026	NM_004721.4	488	gCc/gTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801473	1801473	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	58	575	0	ENST00000260795.2:c.380-1G>A		p.X127_splice	ENST00000260795		127																																																																															
KIT	3815	MSKCC	GRCh37	4	55589771	55589771	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	84	577	0	ENST00000288135.5:c.1253A>G	p.Tyr418Cys	p.Y418C	ENST00000288135	NM_000222.2	418	tAc/tGc																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84391389	84391389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	83	540	2	ENST00000321945.7:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000321945	NM_139076.2	148	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244119	153244119	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	60	647	0	ENST00000281708.4:c.2038A>G	p.Thr680Ala	p.T680A	ENST00000281708	NM_033632.3	680	Aca/Gca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509963	187509963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	65	544	1	ENST00000441802.2:c.13550C>T	p.Ala4517Val	p.A4517V	ENST00000441802	NM_005245.3	4517	gCc/gTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187558040	187558040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	40	435	0	ENST00000441802.2:c.3671C>T	p.Pro1224Leu	p.P1224L	ENST00000441802	NM_005245.3	1224	cCc/cTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187558064	187558064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	31	371	0	ENST00000441802.2:c.3647C>A	p.Thr1216Asn	p.T1216N	ENST00000441802	NM_005245.3	1216	aCt/aAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628206	187628206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	67	510	0	ENST00000441802.2:c.2776A>G	p.Thr926Ala	p.T926A	ENST00000441802	NM_005245.3	926	Aca/Gca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628323	187628323	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	43	336	0	ENST00000441802.2:c.2659C>A	p.Leu887Met	p.L887M	ENST00000441802	NM_005245.3	887	Ctg/Atg																																																																														
SDHA	6389	MSKCC	GRCh37	5	224586	224586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	52	534	0	ENST00000264932.6:c.262G>A	p.Ala88Thr	p.A88T	ENST00000264932	NM_004168.2	88	Gca/Aca																																																																														
TERT	7015	MSKCC	GRCh37	5	1282656	1282656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	76	628	0	ENST00000310581.5:c.1657G>A	p.Val553Ile	p.V553I	ENST00000310581	NM_198253.2	553	Gtc/Atc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38946647	38946647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	41	386	0	ENST00000357387.3:c.4322A>G	p.Asp1441Gly	p.D1441G	ENST00000357387	NM_152756.3	1441	gAt/gGt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189422	56189422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	74	668	0	ENST00000399503.3:c.4454C>T	p.Ala1485Val	p.A1485V	ENST00000399503	NM_005921.1	1485	gCt/gTt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750426	57750426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	64	638	0	ENST00000274289.3:c.2042T>C	p.Leu681Ser	p.L681S	ENST00000274289	NM_006622.3	681	tTa/tCa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590445	67590445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	70	497	2	ENST00000274335.5:c.1507C>T	p.Arg503Trp	p.R503W	ENST00000274335		503	Cgg/Tgg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628365	86628365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	56	529	0	ENST00000274376.6:c.734G>A	p.Arg245His	p.R245H	ENST00000274376	NM_002890.2	245	cGt/cAt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86633825	86633825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	68	628	1	ENST00000274376.6:c.934G>T	p.Glu312Ter	p.E312*	ENST00000274376	NM_002890.2	312	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112177045	112177045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	113	886	0	ENST00000257430.4:c.5754A>G	p.Ile1918Met	p.I1918M	ENST00000257430	NM_000038.5	1918	atA/atG																																																																														
RAD50	10111	MSKCC	GRCh37	5	131939138	131939138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	68	582	1	ENST00000265335.6:c.2354C>T	p.Ala785Val	p.A785V	ENST00000265335		785	gCc/gTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520201	176520201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	57	607	2	ENST00000292408.4:c.1120G>A	p.Ala374Thr	p.A374T	ENST00000292408	NM_213647.1	374	Gcg/Acg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707645	176707645	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	57	504	0	ENST00000439151.2:c.5702A>G	p.Asp1901Gly	p.D1901G	ENST00000439151	NM_022455.4	1901	gAt/gGt																																																																														
CCND3	896	MSKCC	GRCh37	6	41908248	41908248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	64	529	2	ENST00000372991.4:c.274G>A	p.Val92Ile	p.V92I	ENST00000372991	NM_001760.3	92	Gtc/Atc																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793605	89793605	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	72	472	0	ENST00000336032.3:c.674T>C	p.Ile225Thr	p.I225T	ENST00000336032	NM_006813.2	225	aTc/aCc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547235	106547235	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	34	386	0	ENST00000369096.4:c.472T>G	p.Trp158Gly	p.W158G	ENST00000369096	NM_001198.3	158	Tgg/Ggg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715794	117715794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	65	563	0	ENST00000368508.3:c.964T>C	p.Tyr322His	p.Y322H	ENST00000368508	NM_002944.2	322	Tac/Cac																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137525500	137525500	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	109	765	0	ENST00000367739.4:c.515A>G	p.Tyr172Cys	p.Y172C	ENST00000367739	NM_000416.2	172	tAc/tGc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975484	13975484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	29	345	0	ENST00000405192.2:c.403T>C	p.Ser135Pro	p.S135P	ENST00000405192	NM_001163147.1	135	Tcc/Ccc																																																																														
BRAF	673	MSKCC	GRCh37	7	140494170	140494170	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	86	688	3	ENST00000288602.6:c.1078C>T	p.Arg360Ter	p.R360*	ENST00000288602	NM_004333.4	360	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836296	151836296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	58	392	1	ENST00000262189.6:c.14509G>A	p.Ala4837Thr	p.A4837T	ENST00000262189	NM_170606.2	4837	Gcg/Acg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845355	151845355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	61	503	0	ENST00000262189.6:c.13657C>T	p.Leu4553Phe	p.L4553F	ENST00000262189	NM_170606.2	4553	Ctc/Ttc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132842	152132842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	37	552	0	ENST00000262189.6:c.30G>T	p.Glu10Asp	p.E10D	ENST00000262189	NM_170606.2	10	gaG/gaT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341730	8341730	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41281783		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	96	713	3	ENST00000356435.5:c.4910C>T	p.Thr1637Met	p.T1637M	ENST00000356435		1637	aCg/aTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376624	8376624	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	85	648	0	ENST00000356435.5:c.4489A>G	p.Thr1497Ala	p.T1497A	ENST00000356435		1497	Aca/Gca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239048	98239048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	86	519	0	ENST00000331920.6:c.1595C>T	p.Pro532Leu	p.P532L	ENST00000331920	NM_000264.3	532	cCt/cTt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400035	139400035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61751541		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	60	598	0	ENST00000277541.6:c.4313G>A	p.Arg1438His	p.R1438H	ENST00000277541	NM_017617.3	1438	cGc/cAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400303	139400303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	26	205	0	ENST00000277541.6:c.4045G>A	p.Ala1349Thr	p.A1349T	ENST00000277541	NM_017617.3	1349	Gct/Act																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405624	139405624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	56	701	1	ENST00000277541.6:c.2567T>C	p.Val856Ala	p.V856A	ENST00000277541	NM_017617.3	856	gTc/gCc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139411801	139411801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	94	707	0	ENST00000277541.6:c.1478A>G	p.Glu493Gly	p.E493G	ENST00000277541	NM_017617.3	493	gAg/gGg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106003	8106003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	44	481	1	ENST00000346208.3:c.823C>T	p.Arg275Trp	p.R275W	ENST00000346208		275	Cgg/Tgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70333885	70333885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	56	462	0	ENST00000373644.4:c.1790G>A	p.Cys597Tyr	p.C597Y	ENST00000373644	NM_030625.2	597	tGc/tAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910798	114910798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1443	84	1074	2	ENST00000543371.1:c.917C>T	p.Thr306Met	p.T306M	ENST00000543371	NM_001198531.1	306	aCg/aTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274752	123274752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	72	685	2	ENST00000358487.5:c.1166C>T	p.Ala389Val	p.A389V	ENST00000358487	NM_000141.4	389	gCc/gTc																																																																														
CCND1	595	MSKCC	GRCh37	11	69458697	69458697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	123	678	1	ENST00000227507.2:c.512C>T	p.Ala171Val	p.A171V	ENST00000227507	NM_053056.2	171	gCg/gTg																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588824	69588824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	83	708	2	ENST00000168712.1:c.412G>A	p.Ala138Thr	p.A138T	ENST00000168712	NM_002007.2	138	Gcc/Acc																																																																														
ATM	472	MSKCC	GRCh37	11	108115753	108115753	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	38	265	0	ENST00000278616.4:c.901G>T	p.Gly301Cys	p.G301C	ENST00000278616	NM_000051.3	301	Ggt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108196951	108196951	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs200940211		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	50	377	0	ENST00000278616.4:c.6974C>T	p.Ala2325Val	p.A2325V	ENST00000278616	NM_000051.3	2325	gCg/gTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374394	118374394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	74	643	0	ENST00000534358.1:c.7787T>C	p.Val2596Ala	p.V2596A	ENST00000534358	NM_005933.3	2596	gTa/gCa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374740	118374740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	65	626	0	ENST00000534358.1:c.8133G>T	p.Gln2711His	p.Q2711H	ENST00000534358	NM_005933.3	2711	caG/caT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375201	118375201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	49	571	0	ENST00000534358.1:c.8594C>T	p.Ala2865Val	p.A2865V	ENST00000534358	NM_005933.3	2865	gCt/gTt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497566	125497566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	48	260	0	ENST00000428830.2:c.130C>T	p.Arg44Cys	p.R44C	ENST00000428830	NM_001114121.2	44	Cgt/Tgt																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992143	11992143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	55	525	0	ENST00000396373.4:c.233C>T	p.Ser78Phe	p.S78F	ENST00000396373	NM_001987.4	78	tCt/tTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230719	46230719	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	71	652	0	ENST00000334344.6:c.968A>G	p.His323Arg	p.H323R	ENST00000334344	NM_152641.2	323	cAt/cGt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46242652	46242652	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	51	418	0	ENST00000334344.6:c.1614T>G	p.Cys538Trp	p.C538W	ENST00000334344	NM_152641.2	538	tgT/tgG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425454	49425454	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	77	865	0	ENST00000301067.7:c.13034A>C	p.Lys4345Thr	p.K4345T	ENST00000301067	NM_003482.3	4345	aAa/aCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425534	49425534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1306	90	1009	0	ENST00000301067.7:c.12954G>T	p.Lys4318Asn	p.K4318N	ENST00000301067	NM_003482.3	4318	aaG/aaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431915	49431915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	51	596	0	ENST00000301067.7:c.9224C>T	p.Ser3075Leu	p.S3075L	ENST00000301067	NM_003482.3	3075	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447304	49447304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201231484		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	57	589	2	ENST00000301067.7:c.794G>A	p.Arg265His	p.R265H	ENST00000301067	NM_003482.3	265	cGt/cAt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863395	57863395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	102	933	3	ENST00000228682.2:c.1490G>A	p.Arg497His	p.R497H	ENST00000228682	NM_005269.2	497	cGc/cAc																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869493	102869493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	44	348	0	ENST00000307046.8:c.148C>T	p.Pro50Ser	p.P50S	ENST00000307046	NM_001111285.1	50	Ccg/Tcg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112891064	112891064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	57	476	1	ENST00000351677.2:c.398G>A	p.Gly133Asp	p.G133D	ENST00000351677	NM_002834.3	133	gGt/gAt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115419	115115419	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1176	64	795	0	ENST00000257566.3:c.907T>G	p.Phe303Val	p.F303V	ENST00000257566	NM_016569.3	303	Ttc/Gtc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117745	115117745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	51	674	2	ENST00000257566.3:c.690G>A	p.Trp230Ter	p.W230*	ENST00000257566	NM_016569.3	230	tgG/tgA																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536842	120536842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	89	793	2	ENST00000229340.5:c.344G>A	p.Arg115Gln	p.R115Q	ENST00000229340	NM_006861.6	115	cGa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133218828	133218828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	63	623	0	ENST00000320574.5:c.5108G>A	p.Cys1703Tyr	p.C1703Y	ENST00000320574	NM_006231.2	1703	tGt/tAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133226444	133226444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	71	536	0	ENST00000320574.5:c.3614C>T	p.Pro1205Leu	p.P1205L	ENST00000320574	NM_006231.2	1205	cCg/cTg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26923286	26923286	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	89	685	0	ENST00000381527.3:c.282G>A	p.Trp94Ter	p.W94*	ENST00000381527	NM_001260.1	94	tgG/tgA																																																																														
FLT3	2322	MSKCC	GRCh37	13	28626733	28626733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	80	682	1	ENST00000241453.7:c.563G>T	p.Ser188Ile	p.S188I	ENST00000241453	NM_004119.2	188	aGc/aTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911312	32911312	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	87	1028	0	ENST00000380152.3:c.2820A>C	p.Gln940His	p.Q940H	ENST00000380152		940	caA/caC																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436081	110436081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	54	589	0	ENST00000375856.3:c.2320G>A	p.Ala774Thr	p.A774T	ENST00000375856	NM_003749.2	774	Gcg/Acg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610002	81610002	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150602845		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	58	384	3	ENST00000298171.2:c.1600C>T	p.Arg534Cys	p.R534C	ENST00000298171	NM_000369.2	534	Cgc/Tgc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574047	95574047	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	56	412	0	ENST00000343455.3:c.2702A>T	p.Glu901Val	p.E901V	ENST00000343455	NM_177438.2	901	gAg/gTg																																																																														
MGA	23269	MSKCC	GRCh37	15	41961741	41961741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1294	115	1003	2	ENST00000219905.7:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000219905	NM_001164273.1	217	Caa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	41988517	41988517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1322	93	1011	1	ENST00000219905.7:c.1309G>A	p.Glu437Lys	p.E437K	ENST00000219905	NM_001164273.1	437	Gaa/Aaa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477106	67477106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	68	659	1	ENST00000327367.4:c.913G>A	p.Ala305Thr	p.A305T	ENST00000327367	NM_005902.3	305	Gca/Aca																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690572	88690572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	50	581	0	ENST00000360948.2:c.458G>A	p.Arg153Gln	p.R153Q	ENST00000360948	NM_001012338.2	153	cGg/cAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900734	3900734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	35	352	0	ENST00000262367.5:c.362G>T	p.Ser121Ile	p.S121I	ENST00000262367	NM_004380.2	121	aGc/aTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032000	10032000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	108	866	1	ENST00000330684.3:c.823G>A	p.Gly275Arg	p.G275R	ENST00000330684	NM_001134407.1	275	Gga/Aga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273944	10273944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	86	806	0	ENST00000330684.3:c.325G>A	p.Val109Ile	p.V109I	ENST00000330684	NM_001134407.1	109	Gta/Ata																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020496	14020496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	89	639	0	ENST00000311895.7:c.467A>G	p.Asn156Ser	p.N156S	ENST00000311895	NM_005236.2	156	aAc/aGc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81902892	81902892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1288	86	844	0	ENST00000359376.3:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000359376	NM_002661.3	185	Gat/Tat																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81968073	81968073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1336	73	928	3	ENST00000359376.3:c.2779G>A	p.Ala927Thr	p.A927T	ENST00000359376	NM_002661.3	927	Gcc/Acc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15942780	15942780	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	74	842	1	ENST00000268712.3:c.6922C>T	p.Arg2308Ter	p.R2308*	ENST00000268712	NM_006311.3	2308	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15950263	15950263	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	93	724	0	ENST00000268712.3:c.6679+2T>C		p.X2227_splice	ENST00000268712	NM_006311.3	2227																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435252	56435252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	30	258	1	ENST00000407977.2:c.1885G>A	p.Ala629Thr	p.A629T	ENST00000407977		629	Gcc/Acc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438142	56438142	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	79	783	0	ENST00000407977.2:c.849+2T>C		p.X283_splice	ENST00000407977		283																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876485	59876485	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs753214212		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	84	562	0	ENST00000259008.2:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000259008	NM_032043.2	439	cGa/cAa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59926510	59926510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	62	627	0	ENST00000259008.2:c.487C>T	p.Pro163Ser	p.P163S	ENST00000259008	NM_032043.2	163	Ccc/Tcc																																																																														
CD79B	974	MSKCC	GRCh37	17	62007580	62007580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	95	789	1	ENST00000392795.3:c.287G>A	p.Arg96His	p.R96H	ENST00000392795	NM_001039933.1	96	cGc/cAc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39647367	39647367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	67	671	0	ENST00000262039.4:c.2539C>T	p.Arg847Cys	p.R847C	ENST00000262039	NM_002647.2	847	Cgc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604809	48604809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	60	541	2	ENST00000342988.3:c.1631C>T	p.Pro544Leu	p.P544L	ENST00000342988	NM_005359.5	544	cCg/cTg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56376660	56376660	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	107	926	0	ENST00000348428.3:c.700A>G	p.Thr234Ala	p.T234A	ENST00000348428	NM_006785.3	234	Act/Gct																																																																														
STK11	6794	MSKCC	GRCh37	19	1220595	1220595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	59	593	0	ENST00000326873.7:c.613G>A	p.Ala205Thr	p.A205T	ENST00000326873	NM_000455.4	205	Gcg/Acg																																																																														
INSR	3643	MSKCC	GRCh37	19	7132181	7132181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	72	643	2	ENST00000302850.5:c.2830G>A	p.Val944Met	p.V944M	ENST00000302850	NM_000208.2	944	Gtg/Atg																																																																														
INSR	3643	MSKCC	GRCh37	19	7184559	7184559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	37	283	0	ENST00000302850.5:c.742G>A	p.Asp248Asn	p.D248N	ENST00000302850	NM_000208.2	248	Gac/Aac																																																																														
INSR	3643	MSKCC	GRCh37	19	7267491	7267491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	87	674	3	ENST00000302850.5:c.517G>A	p.Val173Met	p.V173M	ENST00000302850	NM_000208.2	173	Gtg/Atg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265723	10265723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	87	726	0	ENST00000340748.4:c.1454A>G	p.Glu485Gly	p.E485G	ENST00000340748		485	gAa/gGa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145690	11145690	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	88	612	0	ENST00000344626.4:c.4052A>G	p.Asp1351Gly	p.D1351G	ENST00000344626	NM_003072.3	1351	gAc/gGc																																																																														
CALR	811	MSKCC	GRCh37	19	13051453	13051453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1362	101	980	1	ENST00000316448.5:c.801G>T	p.Gln267His	p.Q267H	ENST00000316448	NM_004343.3	267	caG/caT																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14628999	14628999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	105	789	1	ENST00000254322.2:c.163C>A	p.Leu55Ile	p.L55I	ENST00000254322	NM_006145.1	55	Ctc/Atc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308375	15308375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	69	622	0	ENST00000263388.2:c.133G>A	p.Asp45Asn	p.D45N	ENST00000263388	NM_000435.2	45	Gac/Aac																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349933	15349933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	43	448	0	ENST00000263377.2:c.3719C>T	p.Ala1240Val	p.A1240V	ENST00000263377	NM_058243.2	1240	gCc/gTc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17941356	17941356	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	60	481	0	ENST00000458235.1:c.3052T>C	p.Tyr1018His	p.Y1018H	ENST00000458235	NM_000215.3	1018	Tac/Cac																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278092	18278092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	76	610	0	ENST00000222254.8:c.1712G>A	p.Arg571His	p.R571H	ENST00000222254	NM_005027.3	571	cGc/cAc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260070	19260070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	83	552	1	ENST00000162023.5:c.223C>T	p.Pro75Ser	p.P75S	ENST00000162023		75	Ccc/Tcc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872372	45872372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	78	715	2	ENST00000391945.4:c.139G>A	p.Gly47Arg	p.G47R	ENST00000391945	NM_000400.3	47	Ggg/Agg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905951	50905951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	107	837	1	ENST00000440232.2:c.923C>T	p.Ala308Val	p.A308V	ENST00000440232	NM_002691.3	308	gCg/gTg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520141	9520141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	71	576	1	ENST00000353224.5:c.2128G>A	p.Val710Ile	p.V710I	ENST00000353224	NM_177990.2	710	Gtc/Atc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022547	31022547	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	51	493	0	ENST00000375687.4:c.2032A>G	p.Arg678Gly	p.R678G	ENST00000375687	NM_015338.5	678	Agg/Ggg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39742763	39742763	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	84	753	1	ENST00000361337.2:c.1606A>G	p.Arg536Gly	p.R536G	ENST00000361337	NM_003286.2	536	Aga/Gga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710554	40710554	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746059787		P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	65	558	1	ENST00000373198.4:c.4297C>T	p.Arg1433Cys	p.R1433C	ENST00000373198	NM_133170.3	1433	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385222	41385222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	74	645	0	ENST00000373198.4:c.739C>T	p.Arg247Cys	p.R247C	ENST00000373198	NM_133170.3	247	Cgc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400186	41400186	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	36	463	0	ENST00000373198.4:c.573A>C	p.Lys191Asn	p.K191N	ENST00000373198	NM_133170.3	191	aaA/aaC																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256409	46256409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	124	940	1	ENST00000371998.3:c.637G>A	p.Ala213Thr	p.A213T	ENST00000371998		213	Gcc/Acc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54945543	54945543	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	83	659	0	ENST00000312783.6:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000312783	NM_198436.1	343	Cgg/Tgg																																																																														
AURKA	6790	MSKCC	GRCh37	20	54948585	54948585	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	59	595	0	ENST00000312783.6:c.733T>C	p.Ser245Pro	p.S245P	ENST00000312783	NM_198436.1	245	Tct/Cct																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961466	54961466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	35	256	0	ENST00000312783.6:c.166C>T	p.Arg56Cys	p.R56C	ENST00000312783	NM_198436.1	56	Cgc/Tgc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42848513	42848513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	80	762	1	ENST00000398585.3:c.829C>T	p.Arg277Cys	p.R277C	ENST00000398585	NM_001135099.1	277	Cgc/Tgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922175	39922175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1427	125	889	2	ENST00000378444.4:c.3997C>A	p.Leu1333Met	p.L1333M	ENST00000378444	NM_001123385.1	1333	Ctg/Atg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030475	47030475	+	intron_variant	Intron	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	79	718	3	ENST00000329236.7:c.201+1578C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
RBM10	8241	MSKCC	GRCh37	X	47045552	47045552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	70	447	0	ENST00000329236.7:c.2285G>A	p.Gly762Asp	p.G762D	ENST00000329236	NM_001204466.1	762	gGc/gAc																																																																														
ARAF	369	MSKCC	GRCh37	X	47428973	47428973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1282	176	879	2	ENST00000377045.4:c.1336G>A	p.Gly446Ser	p.G446S	ENST00000377045	NM_001654.4	446	Ggt/Agt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222456	53222456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	137	644	0	ENST00000375401.3:c.4376G>A	p.Arg1459Gln	p.R1459Q	ENST00000375401	NM_004187.3	1459	cGg/cAg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223601	53223601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	100	428	0	ENST00000375401.3:c.3758C>T	p.Pro1253Leu	p.P1253L	ENST00000375401	NM_004187.3	1253	cCg/cTg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53230914	53230914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	46	518	0	ENST00000375401.3:c.1879C>T	p.Arg627Cys	p.R627C	ENST00000375401	NM_004187.3	627	Cgc/Tgc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53244991	53244991	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1372	108	910	0	ENST00000375401.3:c.949A>C	p.Ser317Arg	p.S317R	ENST00000375401	NM_004187.3	317	Agc/Cgc																																																																														
MED12	9968	MSKCC	GRCh37	X	70345283	70345283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	111	738	2	ENST00000374080.3:c.2309C>T	p.Ala770Val	p.A770V	ENST00000374080		770	gCc/gTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76829740	76829740	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	98	897	0	ENST00000373344.5:c.6301G>T	p.Glu2101Ter	p.E2101*	ENST00000373344	NM_000489.3	2101	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76874395	76874395	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	75	812	1	ENST00000373344.5:c.5327T>A	p.Phe1776Tyr	p.F1776Y	ENST00000373344	NM_000489.3	1776	tTc/tAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76889062	76889062	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	86	833	0	ENST00000373344.5:c.4948A>G	p.Lys1650Glu	p.K1650E	ENST00000373344	NM_000489.3	1650	Aag/Gag																																																																														
ATRX	546	MSKCC	GRCh37	X	76938830	76938830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	92	819	2	ENST00000373344.5:c.1918G>A	p.Val640Ile	p.V640I	ENST00000373344	NM_000489.3	640	Gtt/Att																																																																														
ATRX	546	MSKCC	GRCh37	X	76938967	76938967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	106	972	0	ENST00000373344.5:c.1781C>T	p.Ser594Phe	p.S594F	ENST00000373344	NM_000489.3	594	tCc/tTc																																																																														
BTK	695	MSKCC	GRCh37	X	100615101	100615101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	106	921	1	ENST00000308731.7:c.814G>A	p.Ala272Thr	p.A272T	ENST00000308731	NM_000061.2	272	Gca/Aca																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215302	123215302	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	132	896	3	ENST00000218089.9:c.2848G>T	p.Glu950Ter	p.E950*	ENST00000218089	NM_001042749.1	950	Gaa/Taa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217323	123217323	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	78	828	0	ENST00000218089.9:c.2977C>G	p.Pro993Ala	p.P993A	ENST00000218089	NM_001042749.1	993	Cca/Gca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	191	524	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508361	106508361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	32	185	0	ENST00000359195.3:c.355C>A	p.Leu119Met	p.L119M	ENST00000359195	NM_002649.2	119	Ctg/Atg																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494306	2494306	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	231	607	1	ENST00000355716.4:c.697G>A	p.Asp233Asn	p.D233N	ENST00000355716	NM_003820.2	233	Gat/Aat																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518496	204518496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	56	426	0	ENST00000367182.3:c.1159G>C	p.Asp387His	p.D387H	ENST00000367182	NM_001278516.1	387	Gat/Cat																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518731	204518731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	59	411	0	ENST00000367182.3:c.1394G>A	p.Arg465Lys	p.R465K	ENST00000367182	NM_001278516.1	465	aGa/aAa																																																																														
REL	5966	MSKCC	GRCh37	2	61149399	61149399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	230	563	0	ENST00000295025.8:c.1589C>A	p.Pro530Gln	p.P530Q	ENST00000295025	NM_002908.2	530	cCa/cAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134977861	134977861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	99	472	1	ENST00000398015.3:c.2854C>A	p.Leu952Met	p.L952M	ENST00000398015	NM_004441.4	952	Ctg/Atg																																																																														
TP63	8626	MSKCC	GRCh37	3	189608590	189608590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	173	605	0	ENST00000264731.3:c.1665G>T	p.Arg555Ser	p.R555S	ENST00000264731	NM_003722.4	555	agG/agT																																																																														
TP63	8626	MSKCC	GRCh37	3	189612133	189612133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	134	574	1	ENST00000264731.3:c.1885G>T	p.Gly629Cys	p.G629C	ENST00000264731	NM_003722.4	629	Ggc/Tgc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141031	55141031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	109	511	0	ENST00000257290.5:c.1677G>T	p.Trp559Cys	p.W559C	ENST00000257290	NM_006206.4	559	tgG/tgT																																																																														
KDR	3791	MSKCC	GRCh37	4	55968064	55968064	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	69	347	1	ENST00000263923.4:c.2266G>A	p.Gly756Ser	p.G756S	ENST00000263923	NM_002253.2	756	Ggt/Agt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230794	66230794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	65	575	0	ENST00000273854.3:c.2177G>T	p.Ser726Ile	p.S726I	ENST00000273854	NM_004439.5	726	aGt/aTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540407	187540407	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	71	325	0	ENST00000441802.2:c.7333G>C	p.Gly2445Arg	p.G2445R	ENST00000441802	NM_005245.3	2445	Ggg/Cgg																																																																														
APC	324	MSKCC	GRCh37	5	112177784	112177784	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	98	315	0	ENST00000257430.4:c.6493C>G	p.Pro2165Ala	p.P2165A	ENST00000257430	NM_000038.5	2165	Cca/Gca																																																																														
NSD1	64324	MSKCC	GRCh37	5	176694713	176694713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	63	687	0	ENST00000439151.2:c.5297G>A	p.Arg1766Gln	p.R1766Q	ENST00000439151	NM_022455.4	1766	cGa/cAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169072	32169072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	167	604	0	ENST00000375023.3:c.3961C>A	p.Leu1321Met	p.L1321M	ENST00000375023	NM_004557.3	1321	Ctg/Atg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528747	157528747	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	92	516	0	ENST00000346085.5:c.6472A>T	p.Asn2158Tyr	p.N2158Y	ENST00000346085	NM_020732.3	2158	Aac/Tac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518366	8518366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	78	267	1	ENST00000356435.5:c.1025C>T	p.Thr342Met	p.T342M	ENST00000356435		342	aCg/aTg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923375	36923375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	209	532	0	ENST00000358127.4:c.887C>G	p.Pro296Arg	p.P296R	ENST00000358127	NM_001280556.1	296	cCg/cGg																																																																														
EED	8726	MSKCC	GRCh37	11	85963262	85963262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	138	482	0	ENST00000263360.6:c.340G>T	p.Ala114Ser	p.A114S	ENST00000263360	NM_003797.3	114	Gca/Tca																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201946	102201946	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1234	137	785	0	ENST00000263464.3:c.1298A>T	p.Glu433Val	p.E433V	ENST00000263464	NM_001165.4	433	gAa/gTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472427	88472427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	135	523	0	ENST00000360948.2:c.2128T>C	p.Tyr710His	p.Y710H	ENST00000360948	NM_001012338.2	710	Tac/Cac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900443	3900443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	83	613	0	ENST00000262367.5:c.653G>C	p.Arg218Thr	p.R218T	ENST00000262367	NM_004380.2	218	aGa/aCa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900455	3900455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	87	649	0	ENST00000262367.5:c.641G>T	p.Gly214Val	p.G214V	ENST00000262367	NM_004380.2	214	gGg/gTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969851	81969851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	309	757	1	ENST00000359376.3:c.2920C>T	p.Leu974Phe	p.L974F	ENST00000359376	NM_002661.3	974	Ctc/Ttc																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805924	46805924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	151	676	0	ENST00000290295.7:c.32G>A	p.Gly11Glu	p.G11E	ENST00000290295	NM_006361.5	11	gGa/gAa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699321	47699321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	96	541	0	ENST00000347630.2:c.187G>C	p.Asp63His	p.D63H	ENST00000347630	NM_001007230.1	63	Gat/Cat																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245051	53245051	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	251	832	1	ENST00000375401.3:c.889G>T	p.Glu297Ter	p.E297*	ENST00000375401	NM_004187.3	297	Gag/Tag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245127	53245127	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	225	735	0	ENST00000375401.3:c.813del	p.Val272TrpfsTer2	p.V272Wfs*2	ENST00000375401	NM_004187.3	271	gtA/gt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	64	230	0	ENST00000304494.5:c.204_205delinsTT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcTTag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	64	230	0	ENST00000304494.5:c.204_205delinsTT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcTTag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	61	221	0	ENST00000304494.5:c.204_205delinsTT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcTTag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602487	10602488	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	232	444	0	ENST00000171111.5:c.1090_1091delinsTT	p.Gly364Phe	p.G364F	ENST00000171111	NM_203500.1	364	GGc/TTc																																																																														
SMO	6608	MSKCC	GRCh37	7	128845597	128845598	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0012400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	310	444	0	ENST00000249373.3:c.894_895delinsAT	p.Asp298_Gly299delinsGluCys	p.D298_G299delinsEC	ENST00000249373	NM_005631.4	298	gaTGgc/gaATgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	109	201	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0012417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	250	592	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	191	439	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	69	328	0				ENST00000310581	NM_198253.2																																																																																
KDM5C	8242	MSKCC	GRCh37	X	53226187	53226187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	182	516	3	ENST00000375401.3:c.2662C>T	p.Arg888Cys	p.R888C	ENST00000375401	NM_004187.3	888	Cgt/Tgt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467669	50467669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	154	473	0	ENST00000331340.3:c.904G>A	p.Glu302Lys	p.E302K	ENST00000331340	NM_006060.4	302	Gag/Aag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560902	9560902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	172	638	0	ENST00000353224.5:c.880G>A	p.Glu294Lys	p.E294K	ENST00000353224	NM_177990.2	294	Gaa/Aaa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693886	47693886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	198	695	0	ENST00000233146.2:c.1600C>T	p.Arg534Cys	p.R534C	ENST00000233146	NM_000251.2	534	Cgt/Tgt																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321372	1321372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	98	549	0	ENST00000381566.1:c.383C>T	p.Ser128Leu	p.S128L	ENST00000381566		128	tCg/tTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376322	118376322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1482	187	944	0	ENST00000534358.1:c.9715C>T	p.Pro3239Ser	p.P3239S	ENST00000534358	NM_005933.3	3239	Ccc/Tcc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076784	72076784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	171	776	0	ENST00000357731.5:c.713G>A	p.Gly238Glu	p.G238E	ENST00000357731	NM_173808.2	238	gGa/gAa																																																																														
ATM	472	MSKCC	GRCh37	11	108163486	108163486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	147	565	0	ENST00000278616.4:c.4577C>T	p.Pro1526Leu	p.P1526L	ENST00000278616	NM_000051.3	1526	cCc/cTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665379	176665379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	186	504	1	ENST00000439151.2:c.4063C>T	p.Pro1355Ser	p.P1355S	ENST00000439151	NM_022455.4	1355	Ccc/Tcc																																																																														
IRF4	3662	MSKCC	GRCh37	6	397187	397187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	156	566	1	ENST00000380956.4:c.572C>T	p.Pro191Leu	p.P191L	ENST00000380956	NM_001195286.1	191	cCg/cTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94124437	94124437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	101	832	0	ENST00000369303.4:c.146C>T	p.Ser49Phe	p.S49F	ENST00000369303	NM_004440.3	49	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260456	16260456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201347979		P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	88	325	0	ENST00000375759.3:c.7721C>T	p.Pro2574Leu	p.P2574L	ENST00000375759	NM_015001.2	2574	cCg/cTg																																																																														
PARP1	142	MSKCC	GRCh37	1	226570880	226570880	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	61	239	0	ENST00000366794.5:c.1016T>G	p.Phe339Cys	p.F339C	ENST00000366794	NM_001618.3	339	tTc/tGc																																																																														
INHA	3623	MSKCC	GRCh37	2	220439922	220439922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1168	265	781	0	ENST00000243786.2:c.775C>T	p.His259Tyr	p.H259Y	ENST00000243786	NM_002191.3	259	Cat/Tat																																																																														
KDR	3791	MSKCC	GRCh37	4	55970899	55970899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	145	636	0	ENST00000263923.4:c.1898C>T	p.Ser633Phe	p.S633F	ENST00000263923	NM_002253.2	633	tCc/tTc																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250770	26250770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1443	267	950	4	ENST00000446824.2:c.64G>A	p.Ala22Thr	p.A22T	ENST00000446824	NM_021018.2	22	Gcc/Acc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178701	32178701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	170	474	0	ENST00000375023.3:c.2693C>T	p.Ser898Phe	p.S898F	ENST00000375023	NM_004557.3	898	tCt/tTt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741491	145741491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1234	164	725	0	ENST00000428558.2:c.1012C>T	p.Pro338Ser	p.P338S	ENST00000428558	NM_004260.3	338	Ccc/Tcc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342852	87342852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	63	348	0	ENST00000277120.3:c.1137G>A	p.Met379Ile	p.M379I	ENST00000277120		379	atG/atA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	71	322	1	ENST00000371953.3:c.376G>A	p.Ala126Thr	p.A126T	ENST00000371953	NM_000314.4	126	Gct/Act																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993785	72993785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	118	709	2	ENST00000268489.5:c.260C>T	p.Ser87Phe	p.S87F	ENST00000268489	NM_006885.3	87	tCc/tTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76889146	76889146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1333	236	754	0	ENST00000373344.5:c.4864G>A	p.Ala1622Thr	p.A1622T	ENST00000373344	NM_000489.3	1622	Gcg/Acg																																																																														
ATRX	546	MSKCC	GRCh37	X	76937453	76937453	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	151	579	0	ENST00000373344.5:c.3295A>C	p.Lys1099Gln	p.K1099Q	ENST00000373344	NM_000489.3	1099	Aag/Cag																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78681752	78681753	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	114	583	0	ENST00000306801.3:c.460_461delinsAA	p.Gly154Lys	p.G154K	ENST00000306801	NM_020761.2	154	GGg/AAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730905	40730906	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	87	336	1	ENST00000373198.4:c.3629_3630delinsTT	p.Pro1210Leu	p.P1210L	ENST00000373198	NM_133170.3	1210	cCC/cTT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	178	265	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	74	235	0				ENST00000310581	NM_198253.2																																																																																
RBM10	8241	MSKCC	GRCh37	X	47032529	47032529	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0012595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	165	419	0	ENST00000329236.7:c.205del	p.Arg69ValfsTer16	p.R69Vfs*16	ENST00000329236	NM_001204466.1	68	atC/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	232	363	0				ENST00000310581	NM_198253.2																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604775	48604775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	278	568	0	ENST00000342988.3:c.1597C>T	p.Leu533Phe	p.L533F	ENST00000342988	NM_005359.5	533	Ctc/Ttc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971202	21971608	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATC	CATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATC	-			P-0012696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	45	205	0	ENST00000304494.5:c.151-401_156del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971202	21971608	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATC	CATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATC	-			P-0012696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	45	205	0	ENST00000304494.5:c.151-401_156del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971202	21971608	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATC	CATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATC	-			P-0012696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	45	205	0	ENST00000304494.5:c.151-401_156del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
TCF3	6929	MSKCC	GRCh37	19	1621035	1621035	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	144	862	2	ENST00000344749.5:c.1025del	p.Pro342ArgfsTer52	p.P342Rfs*52	ENST00000344749	NM_001136139.2	342	cCg/cg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578165	7578188	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCAAACCAGACCTCAGGCGGCTC	TGCAAACCAGACCTCAGGCGGCTC	-			P-0012696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	400	647	0	ENST00000269305.4:c.661_672+12del		p.X221_splice	ENST00000269305	NM_001126112.2	221																																																																															
MET	4233	MSKCC	GRCh37	7	116411658	116411662	+	protein_altering_variant	In_Frame_Del	DEL	TATTA	TATTA	AT			P-0012696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	626	543	0	ENST00000397752.3:c.2837_2841delinsAT	p.Leu946_Leu947delinsTyr	p.L946_L947delinsY	ENST00000397752	NM_000245.2	946	tTATTA/tAT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	77	352	0				ENST00000310581	NM_198253.2																																																																																
MITF	4286	MSKCC	GRCh37	3	69998274	69998274	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	212	524	0	ENST00000352241.4:c.835A>G	p.Asn279Asp	p.N279D	ENST00000352241	NM_198159.2	279	Aac/Gac																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023151	150023151	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	220	666	0	ENST00000253339.5:c.112C>G	p.Leu38Val	p.L38V	ENST00000253339		38	Ctt/Gtt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520029	106520029	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	181	522	0	ENST00000359195.3:c.2457T>A	p.Asp819Glu	p.D819E	ENST00000359195	NM_002649.2	819	gaT/gaA																																																																														
FANCC	2176	MSKCC	GRCh37	9	97864057	97864057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	91	640	2	ENST00000289081.3:c.1609G>A	p.Gly537Ser	p.G537S	ENST00000289081	NM_000136.2	537	Ggc/Agc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40368064	40368064	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	220	806	0	ENST00000293328.3:c.1441A>G	p.Thr481Ala	p.T481A	ENST00000293328	NM_012448.3	481	Act/Gct																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602767	10602767	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	148	488	0	ENST00000171111.5:c.811G>C	p.Val271Leu	p.V271L	ENST00000171111	NM_203500.1	271	Gtg/Ctg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482736	67482757	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCTATTTCTTACAGGAGACAG	CCCTATTTCTTACAGGAGACAG	-			P-0012709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	140	527	0	ENST00000327367.4:c.1155-15_1161del		p.X385_splice	ENST00000327367	NM_005902.3	385																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	182	410	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	63	152	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	102	182	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	74	589	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	153	599	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	196	592	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916728	178916728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1527	123	893	0	ENST00000263967.3:c.115G>A	p.Glu39Lys	p.E39K	ENST00000263967	NM_006218.2	39	Gag/Aag																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288194	33288194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	73	432	0	ENST00000374542.5:c.1214C>G	p.Ser405Cys	p.S405C	ENST00000374542	NM_001141970.1	405	tCt/tGt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850981	63850981	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	40	507	0	ENST00000279873.7:c.1759G>T	p.Glu587Ter	p.E587*	ENST00000279873	NM_032199.2	587	Gaa/Taa																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67198863	67198863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	43	514	0	ENST00000312629.5:c.334G>C	p.Asp112His	p.D112H	ENST00000312629	NM_003952.2	112	Gac/Cac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374271	118374271	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	55	691	0	ENST00000534358.1:c.7664C>G	p.Ser2555Ter	p.S2555*	ENST00000534358	NM_005933.3	2555	tCa/tGa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448360	49448360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	56	659	0	ENST00000301067.7:c.351G>C	p.Gln117His	p.Q117H	ENST00000301067	NM_003482.3	117	caG/caC																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562625	21562625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	24	142	1	ENST00000382592.4:c.1294G>A	p.Val432Met	p.V432M	ENST00000382592	NM_014572.2	432	Gtg/Atg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838163	89838163	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	85	699	0	ENST00000389301.3:c.2074G>T	p.Glu692Ter	p.E692*	ENST00000389301	NM_000135.2	692	Gag/Tag																																																																														
GNA11	2767	MSKCC	GRCh37	19	3121063	3121063	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	81	680	0	ENST00000078429.4:c.966G>C	p.Lys322Asn	p.K322N	ENST00000078429	NM_002067.2	322	aaG/aaC																																																																														
RB1	5925	MSKCC	GRCh37	13	49039379	49039379	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	312	798	0	ENST00000267163.4:c.2366del	p.Pro789LeufsTer21	p.P789Lfs*21	ENST00000267163	NM_000321.2	788	agC/ag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105668	27105669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	176	611	0	ENST00000324856.7:c.5282dup	p.Gly1762TrpfsTer11	p.G1762Wfs*11	ENST00000324856	NM_006015.4	1760	gag/gaGg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188865	32188865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138205668		P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	140	588	1	ENST00000375023.3:c.689G>A	p.Arg230His	p.R230H	ENST00000375023	NM_004557.3	230	cGt/cAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	46	614	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55980345	55980345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1172	66	826	0	ENST00000263923.4:c.746G>T	p.Arg249Ile	p.R249I	ENST00000263923	NM_002253.2	249	aGa/aTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970966	21970966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	86	558	0	ENST00000304494.5:c.392G>C	p.Arg131Pro	p.R131P	ENST00000304494	NM_000077.4	131	cGc/cCc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970966	21970966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	86	558	0	ENST00000304494.5:c.392G>C	p.Arg131Pro	p.R131P	ENST00000304494	NM_000077.4	131	cGc/cCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	200	578	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458630	120458630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	90	490	0	ENST00000256646.2:c.6715G>C	p.Gly2239Arg	p.G2239R	ENST00000256646	NM_024408.3	2239	Gga/Cga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510838	120510838	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	61	436	0	ENST00000256646.2:c.1126G>C	p.Asp376His	p.D376H	ENST00000256646	NM_024408.3	376	Gat/Cat																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612754	228612754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1382	286	1238	1	ENST00000366696.1:c.273G>T	p.Met91Ile	p.M91I	ENST00000366696	NM_003493.2	91	atG/atT																																																																														
BARD1	580	MSKCC	GRCh37	2	215645996	215645996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	151	638	2	ENST00000260947.4:c.602G>T	p.Arg201Ile	p.R201I	ENST00000260947	NM_000465.2	201	aGa/aTa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204752	128204752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1363	155	1005	2	ENST00000341105.2:c.689G>T	p.Arg230Leu	p.R230L	ENST00000341105	NM_032638.4	230	cGc/cTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880952	134880952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	90	605	1	ENST00000398015.3:c.1515G>T	p.Gln505His	p.Q505H	ENST00000398015	NM_004441.4	505	caG/caT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295322	1295322	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	108	502	0				ENST00000310581	NM_198253.2																																																																																
PLK2	10769	MSKCC	GRCh37	5	57754599	57754599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	91	677	0	ENST00000274289.3:c.448G>A	p.Glu150Lys	p.E150K	ENST00000274289	NM_006622.3	150	Gag/Aag																																																																														
PARK2	5071	MSKCC	GRCh37	6	162475134	162475134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	109	792	0	ENST00000366898.1:c.607G>T	p.Gly203Trp	p.G203W	ENST00000366898	NM_004562.2	203	Ggg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878107	151878107	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	125	508	0	ENST00000262189.6:c.6838G>C	p.Gly2280Arg	p.G2280R	ENST00000262189	NM_170606.2	2280	Gga/Cga																																																																														
PAX5	5079	MSKCC	GRCh37	9	36840597	36840597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	81	606	0	ENST00000358127.4:c.1136C>A	p.Ala379Asp	p.A379D	ENST00000358127	NM_001280556.1	379	gCc/gAc																																																																														
WT1	7490	MSKCC	GRCh37	11	32450138	32450138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	74	551	0	ENST00000332351.3:c.674C>A	p.Thr225Lys	p.T225K	ENST00000332351	NM_024426.4	225	aCg/aAg																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518619	69518619	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	44	260	0	ENST00000294312.3:c.26A>T	p.His9Leu	p.H9L	ENST00000294312	NM_005117.2	9	cAc/cTc																																																																														
PGR	5241	MSKCC	GRCh37	11	100922228	100922228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	150	941	0	ENST00000325455.5:c.2284G>T	p.Gly762Cys	p.G762C	ENST00000325455	NM_001202474.3	762	Ggt/Tgt																																																																														
PGR	5241	MSKCC	GRCh37	11	100999530	100999530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1376	170	1000	1	ENST00000325455.5:c.272A>T	p.Glu91Val	p.E91V	ENST00000325455	NM_001202474.3	91	gAa/gTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342614	118342614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	152	817	0	ENST00000534358.1:c.740G>A	p.Gly247Glu	p.G247E	ENST00000534358	NM_005933.3	247	gGa/gAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109812	115109812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	41	531	0	ENST00000257566.3:c.2066G>T	p.Gly689Val	p.G689V	ENST00000257566	NM_016569.3	689	gGc/gTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112113	115112113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	202	712	0	ENST00000257566.3:c.1627C>A	p.Leu543Met	p.L543M	ENST00000257566	NM_016569.3	543	Ctg/Atg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120752	115120752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	53	643	0	ENST00000257566.3:c.254C>A	p.Ala85Glu	p.A85E	ENST00000257566	NM_016569.3	85	gCg/gAg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28624281	28624281	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	105	815	1	ENST00000241453.7:c.693C>A	p.Cys231Ter	p.C231*	ENST00000241453	NM_004119.2	231	tgC/tgA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060976	38060976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	70	347	0	ENST00000250448.2:c.1013G>T	p.Ser338Ile	p.S338I	ENST00000250448	NM_004496.3	338	aGt/aTt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572537	95572537	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	101	387	0	ENST00000343455.3:c.2828A>C	p.His943Pro	p.H943P	ENST00000343455	NM_177438.2	943	cAt/cCt																																																																														
B2M	567	MSKCC	GRCh37	15	45007815	45007815	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	120	558	2	ENST00000558401.1:c.262A>T	p.Thr88Ser	p.T88S	ENST00000558401	NM_004048.2	88	Act/Tct																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476354	88476354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	270	679	0	ENST00000360948.2:c.1778C>T	p.Thr593Ile	p.T593I	ENST00000360948	NM_001012338.2	593	aCc/aTc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99442834	99442834	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	72	546	0	ENST00000268035.6:c.1231G>T	p.Glu411Ter	p.E411*	ENST00000268035	NM_000875.3	411	Gag/Tag																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347721	347721	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	133	458	0	ENST00000262320.3:c.1784+1G>T		p.X595_splice	ENST00000262320	NM_003502.3	595																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31016052	31016052	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1302	134	848	0	ENST00000375687.4:c.373+1G>T		p.X125_splice	ENST00000375687	NM_015338.5	125																																																																															
STK11	6794	MSKCC	GRCh37	19	1218442	1218442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	206	701	0	ENST00000326873.7:c.318del	p.His107ThrfsTer22	p.H107Tfs*22	ENST00000326873	NM_000455.4	106	cGg/cg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230669	46230670	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	229	788	0	ENST00000334344.6:c.918_919delinsCT	p.Leu306_Ala307delinsPheSer	p.L306_A307delinsFS	ENST00000334344	NM_152641.2	306	ttGGca/ttCTca																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120483272	120483273	+	synonymous_variant	Silent	DNP	CT	CT	GA			P-0012817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	75	508	0	ENST00000256646.2:c.3088_3089delinsTC	p.Ser1030=	p.S1030=	ENST00000256646	NM_024408.3	1030	AGc/TCc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	128	444	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	53	190	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012884-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	247	390	0				ENST00000310581	NM_198253.2																																																																																
INPP4A	3631	MSKCC	GRCh37	2	99149885	99149885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012884-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	173	541	0	ENST00000074304.5:c.197G>A	p.Ser66Asn	p.S66N	ENST00000074304	NM_001134224.1	66	aGt/aAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0012947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	308	497	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	301	554	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	203	354	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	203	354	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	203	354	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023895	27023895	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	180	263	2	ENST00000324856.7:c.1001C>A	p.Ser334Ter	p.S334*	ENST00000324856	NM_006015.4	334	tCg/tAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100201	27100201	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	235	504	0	ENST00000324856.7:c.3997C>T	p.Gln1333Ter	p.Q1333*	ENST00000324856	NM_006015.4	1333	Cag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251725	212251725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144311212		P-0012947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	255	621	1	ENST00000342788.4:c.3334C>T	p.Arg1112Cys	p.R1112C	ENST00000342788	NM_005235.2	1112	Cgc/Tgc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127727	64127727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	217	428	0	ENST00000334205.4:c.220C>T	p.Gln74Ter	p.Q74*	ENST00000334205	NM_003942.2	74	Cag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134260	11134260	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	344	698	0	ENST00000344626.4:c.2926T>A	p.Leu976Met	p.L976M	ENST00000344626	NM_003072.3	976	Ttg/Atg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317428	1317428	+	downstream_gene_variant	3'Flank	SNP	C	C	T	rs200254974		P-0012947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	376	855	0				ENST00000381566																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	60	463	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	27	263	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	145	604	1	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	122	703	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	49	469	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
CUL3	8452	MSKCC	GRCh37	2	225379350	225379350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	77	595	1	ENST00000264414.4:c.518G>A	p.Arg173Gln	p.R173Q	ENST00000264414	NM_003590.4	173	cGg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145644	11145644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	132	439	1	ENST00000344626.4:c.4006C>T	p.Arg1336Cys	p.R1336C	ENST00000344626	NM_003072.3	1336	Cgc/Tgc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133561	55133561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	112	580	0	ENST00000257290.5:c.865G>A	p.Glu289Lys	p.E289K	ENST00000257290	NM_006206.4	289	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	79	447	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55220275	55220275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	159	639	1	ENST00000275493.2:c.665G>A	p.Arg222His	p.R222H	ENST00000275493	NM_005228.3	222	cGc/cAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139397768	139397768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	91	411	0	ENST00000277541.6:c.5033T>C	p.Leu1678Pro	p.L1678P	ENST00000277541	NM_017617.3	1678	cTg/cCg																																																																														
ATM	472	MSKCC	GRCh37	11	108098419	108098419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	53	285	0	ENST00000278616.4:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000278616	NM_000051.3	23	cGa/cAa																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111921737	111921737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	131	643	0	ENST00000393256.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000393256	NM_006538.4	176	Gaa/Aaa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	150	430	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439834	52439834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	177	614	0	ENST00000460680.1:c.878C>T	p.Pro293Leu	p.P293L	ENST00000460680	NM_004656.3	293	cCg/cTg																																																																														
RHOA	387	MSKCC	GRCh37	3	49412922	49412922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	209	867	0	ENST00000418115.1:c.101A>G	p.Tyr34Cys	p.Y34C	ENST00000418115	NM_001664.2	34	tAt/tGt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11300570	11300570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	165	650	1	ENST00000361445.4:c.1576C>T	p.Arg526Cys	p.R526C	ENST00000361445	NM_004958.3	526	Cgt/Tgt																																																																														
RHOA	387	MSKCC	GRCh37	3	49397700	49397700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	164	721	1	ENST00000418115.1:c.524C>T	p.Thr175Met	p.T175M	ENST00000418115	NM_001664.2	175	aCg/aTg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198193	185198193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	155	613	1	ENST00000265026.3:c.2675C>T	p.Thr892Met	p.T892M	ENST00000265026	NM_004721.4	892	aCg/aTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	200	403	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121438954	121438954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	219	879	1	ENST00000257555.6:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000257555		619	Gag/Aag																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	217	1140	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321351	1321351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	164	650	1	ENST00000381566.1:c.404C>T	p.Thr135Met	p.T135M	ENST00000381566		135	aCg/aTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274018	10274018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	206	676	1	ENST00000330684.3:c.251C>T	p.Thr84Met	p.T84M	ENST00000330684	NM_001134407.1	84	aCg/aTg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120541651	120541651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1380	254	1019	2	ENST00000229340.5:c.206G>A	p.Arg69His	p.R69H	ENST00000229340	NM_006861.6	69	cGc/cAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468186	120468186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	122	450	0	ENST00000256646.2:c.4253C>T	p.Pro1418Leu	p.P1418L	ENST00000256646	NM_024408.3	1418	cCc/cTc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525838	148525838	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	79	464	0	ENST00000320356.2:c.619C>T	p.Arg207Ter	p.R207*	ENST00000320356	NM_004456.4	207	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317043	11317043	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	171	683	0	ENST00000361445.4:c.451C>T	p.Arg151Ter	p.R151*	ENST00000361445	NM_004958.3	151	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056142	27056142	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	109	359	0	ENST00000324856.7:c.1138C>A	p.Pro380Thr	p.P380T	ENST00000324856	NM_006015.4	380	Cca/Aca																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46736387	46736387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	158	590	3	ENST00000371975.4:c.1099G>A	p.Ala367Thr	p.A367T	ENST00000371975	NM_003579.3	367	Gct/Act																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330624	65330624	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	147	605	0	ENST00000342505.4:c.1022T>G	p.Leu341Arg	p.L341R	ENST00000342505	NM_002227.2	341	cTg/cGg																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166512	118166512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	142	553	0	ENST00000369448.3:c.1022T>C	p.Leu341Pro	p.L341P	ENST00000369448	NM_017709.3	341	cTg/cCg																																																																														
MDM4	4194	MSKCC	GRCh37	1	204512028	204512028	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	65	477	0	ENST00000367182.3:c.628T>C	p.Tyr210His	p.Y210H	ENST00000367182	NM_001278516.1	210	Tat/Cat																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649643	206649643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	114	473	0	ENST00000367120.3:c.478G>A	p.Ala160Thr	p.A160T	ENST00000367120	NM_014002.3	160	Gct/Act																																																																														
ACVR1	90	MSKCC	GRCh37	2	158594066	158594066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	178	863	1	ENST00000263640.3:c.1507G>A	p.Asp503Asn	p.D503N	ENST00000263640	NM_001105.4	503	Gac/Aac																																																																														
CASP8	841	MSKCC	GRCh37	2	202131422	202131422	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	103	495	0	ENST00000358485.4:c.390A>T	p.Arg130Ser	p.R130S	ENST00000358485	NM_001080125.1	130	agA/agT																																																																														
CASP8	841	MSKCC	GRCh37	2	202151298	202151298	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	182	713	0	ENST00000358485.4:c.1598T>G	p.Leu533Arg	p.L533R	ENST00000358485	NM_001080125.1	533	cTt/cGt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251788	212251788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	43	438	0	ENST00000342788.4:c.3271G>A	p.Ala1091Thr	p.A1091T	ENST00000342788	NM_005235.2	1091	Gct/Act																																																																														
CUL3	8452	MSKCC	GRCh37	2	225339038	225339038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	123	631	1	ENST00000264414.4:c.2231G>A	p.Arg744His	p.R744H	ENST00000264414	NM_003590.4	744	cGt/cAt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225346713	225346713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	103	599	0	ENST00000264414.4:c.1925G>A	p.Arg642Gln	p.R642Q	ENST00000264414	NM_003590.4	642	cGg/cAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278079	41278079	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	109	700	0	ENST00000349496.5:c.1955C>T	p.Ala652Val	p.A652V	ENST00000349496	NM_001904.3	652	gCg/gTg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928015	49928015	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1259	269	953	0	ENST00000296474.3:c.3713A>G	p.Tyr1238Cys	p.Y1238C	ENST00000296474	NM_002447.2	1238	tAc/tGc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181825	56181825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	127	532	0	ENST00000399503.3:c.4049C>T	p.Thr1350Ile	p.T1350I	ENST00000399503	NM_005921.1	1350	aCt/aTt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753945	57753945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	63	565	0	ENST00000274289.3:c.679G>A	p.Ala227Thr	p.A227T	ENST00000274289	NM_006622.3	227	Gca/Aca																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520205	176520205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	135	545	0	ENST00000292408.4:c.1124C>T	p.Ser375Leu	p.S375L	ENST00000292408	NM_213647.1	375	tCg/tTg																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225591	26225591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1757	319	1395	1	ENST00000360408.1:c.209G>A	p.Arg70His	p.R70H	ENST00000360408	NM_003532.2	70	cGc/cAc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29913029	29913029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	179	634	0	ENST00000376809.5:c.1064G>A	p.Gly355Asp	p.G355D	ENST00000376809	NM_002116.7	355	gGc/gAc																																																																														
FYN	2534	MSKCC	GRCh37	6	112025267	112025267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	194	942	1	ENST00000368678.4:c.482G>A	p.Arg161Gln	p.R161Q	ENST00000368678		161	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725529	117725529	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	103	575	0	ENST00000368508.3:c.352C>T	p.Arg118Ter	p.R118*	ENST00000368508	NM_002944.2	118	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517428	157517428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	134	516	0	ENST00000346085.5:c.3992A>G	p.Tyr1331Cys	p.Y1331C	ENST00000346085	NM_020732.3	1331	tAt/tGt																																																																														
HGF	3082	MSKCC	GRCh37	7	81339463	81339463	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	175	636	1	ENST00000222390.5:c.1541G>A	p.Arg514Lys	p.R514K	ENST00000222390	NM_000601.4	514	aGa/aAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879276	151879276	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146455116		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	246	543	0	ENST00000262189.6:c.5669G>A	p.Arg1890Gln	p.R1890Q	ENST00000262189	NM_170606.2	1890	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891099	151891099	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	73	392	0	ENST00000262189.6:c.4655A>G	p.Asn1552Ser	p.N1552S	ENST00000262189	NM_170606.2	1552	aAt/aGt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64128672	64128672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	181	604	0	ENST00000334205.4:c.529C>A	p.Leu177Ile	p.L177I	ENST00000334205	NM_003942.2	177	Ctc/Atc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129418	64129418	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	147	609	1	ENST00000334205.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000334205	NM_003942.2	284	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416066	49416066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	241	867	0	ENST00000301067.7:c.16409C>A	p.Ala5470Asp	p.A5470D	ENST00000301067	NM_003482.3	5470	gCc/gAc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481841	56481841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	195	646	0	ENST00000267101.3:c.769C>T	p.Pro257Ser	p.P257S	ENST00000267101	NM_001982.3	257	Cct/Tct																																																																														
POLE	5426	MSKCC	GRCh37	12	133233742	133233742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	191	652	2	ENST00000320574.5:c.3562A>G	p.Thr1188Ala	p.T1188A	ENST00000320574	NM_006231.2	1188	Acc/Gcc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134490	41134490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1489	294	1210	0	ENST00000379561.5:c.1138C>A	p.Leu380Ile	p.L380I	ENST00000379561	NM_002015.3	380	Ctt/Att																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435297	110435297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	60	156	0	ENST00000375856.3:c.3104C>T	p.Pro1035Leu	p.P1035L	ENST00000375856	NM_003749.2	1035	cCg/cTg																																																																														
BLM	641	MSKCC	GRCh37	15	91333922	91333922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	107	568	1	ENST00000355112.3:c.2867C>T	p.Pro956Leu	p.P956L	ENST00000355112	NM_000057.2	956	cCg/cTg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	364637	364637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	149	593	0	ENST00000262320.3:c.925G>A	p.Gly309Ser	p.G309S	ENST00000262320	NM_003502.3	309	Ggc/Agc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641058	23641058	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45464991		P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	169	646	0	ENST00000261584.4:c.2417C>T	p.Pro806Leu	p.P806L	ENST00000261584	NM_024675.3	806	cCg/cTg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612344	1612344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1349	198	918	1	ENST00000344749.5:c.1675G>A	p.Val559Met	p.V559M	ENST00000344749	NM_001136139.2	559	Gtg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11101853	11101853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	157	565	0	ENST00000344626.4:c.1273C>T	p.Arg425Trp	p.R425W	ENST00000344626	NM_003072.3	425	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11118686	11118686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	205	766	0	ENST00000344626.4:c.2110C>T	p.Arg704Trp	p.R704W	ENST00000344626	NM_003072.3	704	Cgg/Tgg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15379801	15379801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	209	711	1	ENST00000263377.2:c.338G>A	p.Arg113His	p.R113H	ENST00000263377	NM_058243.2	113	cGc/cAc																																																																														
AXL	558	MSKCC	GRCh37	19	41725365	41725365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	86	600	0	ENST00000301178.4:c.68C>T	p.Ala23Val	p.A23V	ENST00000301178	NM_021913.4	23	gCg/gTg																																																																														
AXL	558	MSKCC	GRCh37	19	41762430	41762430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	230	696	1	ENST00000301178.4:c.2110C>T	p.Arg704Cys	p.R704C	ENST00000301178	NM_021913.4	704	Cgc/Tgc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52722957	52722957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	159	545	0	ENST00000322088.6:c.1142G>A	p.Arg381Gln	p.R381Q	ENST00000322088	NM_014225.5	381	cGg/cAg																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30253759	30253759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	146	721	2	ENST00000307677.4:c.695G>A	p.Arg232Gln	p.R232Q	ENST00000307677	NM_138578.1	232	cGg/cAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727085	40727085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	156	581	3	ENST00000373198.4:c.3879G>A	p.Met1293Ile	p.M1293I	ENST00000373198	NM_133170.3	1293	atG/atA																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485136	57485136	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	62	420	0	ENST00000371085.3:c.970G>T	p.Ala324Ser	p.A324S	ENST00000371085	NM_000516.4	324	Gct/Tct																																																																														
EP300	2033	MSKCC	GRCh37	22	41574436	41574436	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	129	587	0	ENST00000263253.7:c.6721C>T	p.Gln2241Ter	p.Q2241*	ENST00000263253	NM_001429.3	2241	Cag/Tag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222450	53222450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	169	354	0	ENST00000375401.3:c.4382G>A	p.Arg1461Gln	p.R1461Q	ENST00000375401	NM_004187.3	1461	cGg/cAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412408	63412408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	39	538	2	ENST00000330258.3:c.759G>A	p.Met253Ile	p.M253I	ENST00000330258	NM_152424.3	253	atG/atA																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412628	63412628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	144	342	2	ENST00000330258.3:c.539G>A	p.Arg180Gln	p.R180Q	ENST00000330258	NM_152424.3	180	cGg/cAg																																																																														
MED12	9968	MSKCC	GRCh37	X	70339230	70339230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	238	420	0	ENST00000374080.3:c.107T>C	p.Leu36Pro	p.L36P	ENST00000374080		36	cTg/cCg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931825	39931826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	179	354	0	ENST00000378444.4:c.2773dup	p.Cys925LeufsTer21	p.C925Lfs*21	ENST00000378444	NM_001123385.1	925	tgt/tTgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29580009	29580010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	36	298	0	ENST00000358273.4:c.4170dup	p.Ser1391IlefsTer4	p.S1391Ifs*4	ENST00000358273	NM_001042492.2	1388	-/A																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	272	441	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	113	498	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	181	414	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	322	514	1	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858016	9858016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	163	762	0	ENST00000330684.3:c.3385C>T	p.His1129Tyr	p.H1129Y	ENST00000330684	NM_001134407.1	1129	Cac/Tac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486082	8486082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	236	734	0	ENST00000356435.5:c.2735C>T	p.Ser912Phe	p.S912F	ENST00000356435		912	tCc/tTc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225449690	225449690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	381	691	1	ENST00000264414.4:c.37G>A	p.Asp13Asn	p.D13N	ENST00000264414	NM_003590.4	13	Gac/Aac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158132	47158132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	342	702	2	ENST00000409792.3:c.4567C>T	p.Arg1523Cys	p.R1523C	ENST00000409792	NM_014159.6	1523	Cgt/Tgt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89858388	89858388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	187	729	0	ENST00000389301.3:c.1172C>T	p.Ser391Phe	p.S391F	ENST00000389301	NM_000135.2	391	tCc/tTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533874	63533874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	215	472	0	ENST00000307078.5:c.1280C>T	p.Pro427Leu	p.P427L	ENST00000307078	NM_004655.3	427	cCc/cTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2220202	2220202	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	126	721	0	ENST00000398665.3:c.2787C>G	p.Ser929Arg	p.S929R	ENST00000398665	NM_032482.2	929	agC/agG																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271810	15271810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	151	377	0	ENST00000263388.2:c.6629C>T	p.Pro2210Leu	p.P2210L	ENST00000263388	NM_000435.2	2210	cCt/cTt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281227	46281227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	349	982	0	ENST00000371998.3:c.4024C>T	p.Pro1342Ser	p.P1342S	ENST00000371998		1342	Ccc/Tcc																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166570	118166571	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0013025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	230	401	0	ENST00000369448.3:c.1080_1081delinsTT	p.Pro361Ser	p.P361S	ENST00000369448	NM_017709.3	360	gcCCct/gcTTct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	58	370	0				ENST00000310581	NM_198253.2																																																																																
ZRSR2	8233	MSKCC	GRCh37	X	15818003	15818003	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	67	225	1	ENST00000307771.7:c.130C>T	p.Gln44Ter	p.Q44*	ENST00000307771	NM_005089.3	44	Cag/Tag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	260	703	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	54	300	0				ENST00000310581	NM_198253.2																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123276902	123276902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	230	758	0	ENST00000358487.5:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000358487	NM_000141.4	339	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985561	2985561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	142	596	0	ENST00000396946.4:c.250G>A	p.Gly84Arg	p.G84R	ENST00000396946	NM_032415.4	84	Ggg/Agg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16263844	16263844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	214	853	0	ENST00000375759.3:c.10213C>T	p.Pro3405Ser	p.P3405S	ENST00000375759	NM_015001.2	3405	Cca/Tca																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376109	225376109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	301	785	1	ENST00000264414.4:c.845C>A	p.Ser282Tyr	p.S282Y	ENST00000264414	NM_003590.4	282	tCt/tAt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430576	181430576	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	44	347	0	ENST00000325404.1:c.428T>C	p.Val143Ala	p.V143A	ENST00000325404	NM_003106.3	143	gTc/gCc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967957	93967957	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	306	1098	0	ENST00000369303.4:c.1970A>T	p.Lys657Ile	p.K657I	ENST00000369303	NM_004440.3	657	aAa/aTa																																																																														
PARK2	5071	MSKCC	GRCh37	6	162475143	162475143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	250	787	2	ENST00000366898.1:c.598C>T	p.His200Tyr	p.H200Y	ENST00000366898	NM_004562.2	200	Cac/Tac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2949718	2949718	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	142	875	0	ENST00000396946.4:c.3226A>C	p.Ile1076Leu	p.I1076L	ENST00000396946	NM_032415.4	1076	Atc/Ctc																																																																														
BRAF	673	MSKCC	GRCh37	7	140482879	140482879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	251	694	0	ENST00000288602.6:c.1256C>T	p.Ser419Phe	p.S419F	ENST00000288602	NM_004333.4	419	tCt/tTt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097635	8097635	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	57	296	0	ENST00000346208.3:c.17A>C	p.Asp6Ala	p.D6A	ENST00000346208		6	gAc/gCc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343150	118343150	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	209	722	0	ENST00000534358.1:c.1276C>G	p.Arg426Gly	p.R426G	ENST00000534358	NM_005933.3	426	Cgg/Ggg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534795	18534795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	176	667	0	ENST00000266497.5:c.1853C>T	p.Pro618Leu	p.P618L	ENST00000266497		618	cCa/cTa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66777494	66777494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	132	522	0	ENST00000307102.5:c.860C>T	p.Pro287Leu	p.P287L	ENST00000307102	NM_002755.3	287	cCa/cTa																																																																														
BLM	641	MSKCC	GRCh37	15	91337577	91337577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	139	352	0	ENST00000355112.3:c.3200G>T	p.Cys1067Phe	p.C1067F	ENST00000355112	NM_000057.2	1067	tGt/tTt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897363	78897363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	196	799	0	ENST00000306801.3:c.2698G>A	p.Asp900Asn	p.D900N	ENST00000306801	NM_020761.2	900	Gac/Aac																																																																														
INSR	3643	MSKCC	GRCh37	19	7122625	7122625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	147	512	0	ENST00000302850.5:c.3529G>A	p.Asp1177Asn	p.D1177N	ENST00000302850	NM_000208.2	1177	Gac/Aac																																																																														
CD79A	973	MSKCC	GRCh37	19	42383312	42383312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	275	977	0	ENST00000221972.3:c.332G>A	p.Gly111Asp	p.G111D	ENST00000221972	NM_021601.3	111	gGc/gAc																																																																														
AR	367	MSKCC	GRCh37	X	66863199	66863199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	193	487	1	ENST00000374690.3:c.1718G>A	p.Gly573Glu	p.G573E	ENST00000374690	NM_000044.3	573	gGa/gAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106261	27106261	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	178	577	0	ENST00000324856.7:c.5872del	p.Glu1958AsnfsTer57	p.E1958Nfs*57	ENST00000324856	NM_006015.4	1958	Gaa/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	39	414	0				ENST00000310581	NM_198253.2																																																																																
IRS1	3667	MSKCC	GRCh37	2	227660532	227660532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	106	331	0	ENST00000305123.5:c.2923A>G	p.Ile975Val	p.I975V	ENST00000305123	NM_005544.2	975	Att/Gtt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	61	301	1				ENST00000310581	NM_198253.2																																																																																
TRAF7	84231	MSKCC	GRCh37	16	2220642	2220642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1343	91	664	2	ENST00000326181.6:c.259G>A	p.Asp87Asn	p.D87N	ENST00000326181	NM_032271.2	87	Gac/Aac																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103506159	103506160	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	43	331	0	ENST00000355739.4:c.318dup	p.Glu107ArgfsTer23	p.E107Rfs*23	ENST00000355739	NM_000123.3	106	aca/acAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	173	453	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	351	576	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	302	490	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162050	47162050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	239	485	1	ENST00000409792.3:c.4076C>T	p.Ser1359Phe	p.S1359F	ENST00000409792	NM_014159.6	1359	tCc/tTc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65348960	65348960	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	134	261	0	ENST00000342505.4:c.205C>T	p.Arg69Cys	p.R69C	ENST00000342505	NM_002227.2	69	Cgt/Tgt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518061	103518061	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	503	428	0	ENST00000355739.4:c.1999C>T	p.Gln667Ter	p.Q667*	ENST00000355739	NM_000123.3	667	Caa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248617	212248617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	356	611	0	ENST00000342788.4:c.3650G>A	p.Gly1217Glu	p.G1217E	ENST00000342788	NM_005235.2	1217	gGa/gAa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12627202	12627202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	295	522	0	ENST00000251849.4:c.1514C>A	p.Pro505His	p.P505H	ENST00000251849	NM_002880.3	505	cCt/cAt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442536	52442536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	228	344	0	ENST00000460680.1:c.209C>T	p.Ser70Phe	p.S70F	ENST00000460680	NM_004656.3	70	tCc/tTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801157	1801157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	238	484	0	ENST00000260795.2:c.286G>A	p.Val96Met	p.V96M	ENST00000260795		96	Gtg/Atg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729478	41729478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	482	988	0	ENST00000242208.4:c.1051G>A	p.Glu351Lys	p.E351K	ENST00000242208	NM_002192.2	351	Gag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508553	106508553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	64	168	0	ENST00000359195.3:c.547C>T	p.Pro183Ser	p.P183S	ENST00000359195	NM_002649.2	183	Ccg/Tcg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024150	31024150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	315	521	1	ENST00000375687.4:c.3635C>T	p.Ser1212Phe	p.S1212F	ENST00000375687	NM_015338.5	1212	tCc/tTc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156741	20156741	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0013180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	220	259	0	ENST00000379607.5:c.17-1G>A		p.X6_splice	ENST00000379607	NM_001412.3	6																																																																															
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	54	672	2	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	26	406	0				ENST00000310581	NM_198253.2																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8341914	8341914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	296	739	1	ENST00000356435.5:c.4726G>A	p.Glu1576Lys	p.E1576K	ENST00000356435		1576	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993828	72993828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	96	927	0	ENST00000268489.5:c.217G>A	p.Glu73Lys	p.E73K	ENST00000268489	NM_006885.3	73	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412203	139412204	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	62	686	0	ENST00000277541.6:c.1441_1441+1delGGinsAA		p.X481_splice	ENST00000277541	NM_017617.3	481																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212537918	212537918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	74	693	1	ENST00000342788.4:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000342788	NM_005235.2	563	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724328	117724328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	64	776	0	ENST00000368508.3:c.551C>T	p.Pro184Leu	p.P184L	ENST00000368508	NM_002944.2	184	cCc/cTc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22162107	22162107	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	63	535	0	ENST00000215832.6:c.148C>T	p.Arg50Ter	p.R50*	ENST00000215832	NM_002745.4	50	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11297959	11297959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	99	760	5	ENST00000361445.4:c.2149C>T	p.Arg717Ter	p.R717*	ENST00000361445	NM_004958.3	717	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099843	27099843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	67	586	0	ENST00000324856.7:c.3722G>A	p.Gly1241Glu	p.G1241E	ENST00000324856	NM_006015.4	1241	gGg/gAg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	71873250	71873250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	84	1002	2	ENST00000357731.5:c.944C>T	p.Pro315Leu	p.P315L	ENST00000357731	NM_173808.2	315	cCa/cTa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162688856	162688856	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	146	692	0	ENST00000367921.3:c.3G>A	p.Met1?	p.M1?	ENST00000367921	NM_006182.2	1	atG/atA																																																																														
CDC73	79577	MSKCC	GRCh37	1	193091415	193091415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	67	852	1	ENST00000367435.3:c.85G>A	p.Glu29Lys	p.E29K	ENST00000367435	NM_024529.4	29	Gag/Aag																																																																														
PARP1	142	MSKCC	GRCh37	1	226570772	226570772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	116	489	0	ENST00000366794.5:c.1124C>T	p.Ser375Leu	p.S375L	ENST00000366794	NM_001618.3	375	tCg/tTg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25991682	25991682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	58	636	0	ENST00000435504.4:c.560C>T	p.Ser187Phe	p.S187F	ENST00000435504		187	tCc/tTc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158630700	158630700	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	111	857	1	ENST00000263640.3:c.544-1G>T		p.X182_splice	ENST00000263640	NM_001105.4	182																																																																															
IDH1	3417	MSKCC	GRCh37	2	209116178	209116178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	48	903	2	ENST00000345146.2:c.98C>T	p.Pro33Leu	p.P33L	ENST00000345146	NM_005896.2	33	cCc/cTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164526	47164526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	111	769	1	ENST00000409792.3:c.1600C>T	p.Pro534Ser	p.P534S	ENST00000409792	NM_014159.6	534	Cct/Tct																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138402603	138402603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	79	856	0	ENST00000289153.2:c.2342C>T	p.Ser781Phe	p.S781F	ENST00000289153	NM_006219.2	781	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524902	187524902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	90	908	0	ENST00000441802.2:c.10778C>T	p.Ser3593Phe	p.S3593F	ENST00000441802	NM_005245.3	3593	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534412	187534412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	67	808	0	ENST00000441802.2:c.9314G>A	p.Arg3105Lys	p.R3105K	ENST00000441802	NM_005245.3	3105	aGa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295198	1295198	+	upstream_gene_variant	5'Flank	SNP	A	A	C			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	24	358	0				ENST00000310581	NM_198253.2																																																																																
FLT4	2324	MSKCC	GRCh37	5	180047966	180047966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	91	770	0	ENST00000261937.6:c.2209C>G	p.Arg737Gly	p.R737G	ENST00000261937	NM_182925.4	737	Cgc/Ggc																																																																														
FYN	2534	MSKCC	GRCh37	6	112041043	112041043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1423	129	1308	0	ENST00000368678.4:c.212C>T	p.Ser71Phe	p.S71F	ENST00000368678		71	tCt/tTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704548	117704548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	69	910	0	ENST00000368508.3:c.2428G>A	p.Glu810Lys	p.E810K	ENST00000368508	NM_002944.2	810	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891655	151891655	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	40	365	0	ENST00000262189.6:c.4379-2A>G		p.X1460_splice	ENST00000262189	NM_170606.2	1460																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139401303	139401303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	97	836	0	ENST00000277541.6:c.3766C>T	p.Pro1256Ser	p.P1256S	ENST00000277541	NM_017617.3	1256	Ccg/Tcg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793298	139793298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1410	116	1110	0	ENST00000247668.2:c.106G>C	p.Ala36Pro	p.A36P	ENST00000247668	NM_021138.3	36	Gcc/Ccc																																																																														
RET	5979	MSKCC	GRCh37	10	43619154	43619154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	99	874	0	ENST00000355710.3:c.2837C>T	p.Thr946Ile	p.T946I	ENST00000355710	NM_020975.4	946	aCc/aTc																																																																														
WT1	7490	MSKCC	GRCh37	11	32438045	32438045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	1714	733	2	ENST00000332351.3:c.992G>A	p.Gly331Glu	p.G331E	ENST00000332351	NM_024426.4	331	gGg/gAg																																																																														
PGR	5241	MSKCC	GRCh37	11	100933369	100933369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1377	101	1253	0	ENST00000325455.5:c.2021C>T	p.Thr674Ile	p.T674I	ENST00000325455	NM_001202474.3	674	aCt/aTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245162	46245162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	57	676	0	ENST00000334344.6:c.3256C>T	p.Pro1086Ser	p.P1086S	ENST00000334344	NM_152641.2	1086	Ccc/Tcc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285566	46285566	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	84	489	0	ENST00000334344.6:c.4926G>A	p.Trp1642Ter	p.W1642*	ENST00000334344	NM_152641.2	1642	tgG/tgA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428255	49428255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	176	699	3	ENST00000301067.7:c.10445G>A	p.Arg3482Gln	p.R3482Q	ENST00000301067	NM_003482.3	3482	cGg/cAg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28896448	28896448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	88	775	0	ENST00000282397.4:c.3002C>T	p.Ser1001Phe	p.S1001F	ENST00000282397	NM_002019.4	1001	tCt/tTt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434766	110434766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	98	700	0	ENST00000375856.3:c.3635C>T	p.Pro1212Leu	p.P1212L	ENST00000375856	NM_003749.2	1212	cCt/cTt																																																																														
MGA	23269	MSKCC	GRCh37	15	41961687	41961687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1529	86	1350	3	ENST00000219905.7:c.595C>T	p.Arg199Cys	p.R199C	ENST00000219905	NM_001164273.1	199	Cgt/Tgt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500553	99500553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	39	672	0	ENST00000268035.6:c.3986C>T	p.Pro1329Leu	p.P1329L	ENST00000268035	NM_000875.3	1329	cCc/cTc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222541	2222541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	217	971	0	ENST00000326181.6:c.735G>A	p.Met245Ile	p.M245I	ENST00000326181	NM_032271.2	245	atG/atA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858186	9858186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	211	998	0	ENST00000330684.3:c.3215G>A	p.Arg1072Lys	p.R1072K	ENST00000330684	NM_001134407.1	1072	aGg/aAg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56872940	56872940	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1515	117	1205	0	ENST00000308159.5:c.2095T>C	p.Phe699Leu	p.F699L	ENST00000308159	NM_014669.4	699	Ttt/Ctt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81941318	81941318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	104	1018	1	ENST00000359376.3:c.1496C>T	p.Ala499Val	p.A499V	ENST00000359376	NM_002661.3	499	gCc/gTc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877132	89877132	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	64	617	0	ENST00000389301.3:c.505G>C	p.Glu169Gln	p.E169Q	ENST00000389301	NM_000135.2	169	Gaa/Caa																																																																														
NF1	4763	MSKCC	GRCh37	17	29548880	29548880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	62	572	0	ENST00000358273.4:c.1654C>G	p.Leu552Val	p.L552V	ENST00000358273	NM_001042492.2	552	Ctt/Gtt																																																																														
INSR	3643	MSKCC	GRCh37	19	7267503	7267503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	139	883	0	ENST00000302850.5:c.505G>C	p.Asp169His	p.D169H	ENST00000302850	NM_000208.2	169	Gat/Cat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145629	11145629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	50	566	0	ENST00000344626.4:c.3991C>T	p.Pro1331Ser	p.P1331S	ENST00000344626	NM_003072.3	1331	Ccc/Tcc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42860333	42860333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	102	928	1	ENST00000398585.3:c.544G>A	p.Glu182Lys	p.E182K	ENST00000398585	NM_001135099.1	182	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41572841	41572841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1183	93	920	0	ENST00000263253.7:c.5126G>A	p.Gly1709Asp	p.G1709D	ENST00000263253	NM_001429.3	1709	gGc/gAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938082	76938082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	94	418	0	ENST00000373344.5:c.2666C>G	p.Ser889Cys	p.S889C	ENST00000373344	NM_000489.3	889	tCt/tGt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6042169	6042170	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	266	881	0	ENST00000265849.7:c.451dup	p.Arg151ProfsTer21	p.R151Pfs*21	ENST00000265849	NM_000535.5	151	cgc/cCgc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562633	21562634	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	42	250	0	ENST00000382592.4:c.1285_1286delinsTT	p.Pro429Phe	p.P429F	ENST00000382592	NM_014572.2	429	CCc/TTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534429	63534430	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	134	613	1	ENST00000307078.5:c.1091_1092delinsTT	p.Pro364Leu	p.P364L	ENST00000307078	NM_004655.3	364	cCC/cTT																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308147	30308148	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	61	719	0	ENST00000262643.3:c.284_285delinsAA	p.Arg95Gln	p.R95Q	ENST00000262643	NM_001238.2	95	cGG/cAA																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671744	67671745	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	53	605	1	ENST00000264010.4:c.2153_2154delinsTT	p.Pro718Leu	p.P718L	ENST00000264010	NM_006565.3	718	cCC/cTT																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56111496	56111497	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	20	181	1	ENST00000399503.3:c.96_97delinsAA	p.Ala33Thr	p.A33T	ENST00000399503	NM_005921.1	32	aaGGcg/aaAAcg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15942917	15942918	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	53	780	0	ENST00000268712.3:c.6784_6785delinsAA	p.Gly2262Lys	p.G2262K	ENST00000268712	NM_006311.3	2262	GGg/AAg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784030	9784031	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0013218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1210	66	914	0	ENST00000377346.4:c.2598_2599delinsAA	p.Ala867Thr	p.A867T	ENST00000377346	NM_005026.3	866	gaGGcc/gaAAcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	380	381	0	ENST00000269305.4:c.532C>G	p.His178Asp	p.H178D	ENST00000269305	NM_001126112.2	178	Cac/Gac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	865	575	1	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	743	536	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793298	242793298	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	262	573	0	ENST00000334409.5:c.779C>G	p.Ser260Ter	p.S260*	ENST00000334409	NM_005018.2	260	tCa/tGa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535408	66535408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	151	177	2	ENST00000273854.3:c.53G>T	p.Gly18Val	p.G18V	ENST00000273854	NM_004439.5	18	gGc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295226	1295226	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	292	198	0				ENST00000310581	NM_198253.2																																																																																
NSD1	64324	MSKCC	GRCh37	5	176562585	176562585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	219	331	0	ENST00000439151.2:c.481G>T	p.Asp161Tyr	p.D161Y	ENST00000439151	NM_022455.4	161	Gat/Tat																																																																														
MED12	9968	MSKCC	GRCh37	X	70342647	70342647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	420	818	2	ENST00000374080.3:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000374080		470	Cgc/Tgc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0013274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	283	725	2	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0013274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	112	229	0				ENST00000310581	NM_198253.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151949698	151949698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	300	772	1	ENST00000262189.6:c.1402C>T	p.Pro468Ser	p.P468S	ENST00000262189	NM_170606.2	468	Ccc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486082	8486082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	258	820	0	ENST00000356435.5:c.2735C>T	p.Ser912Phe	p.S912F	ENST00000356435		912	tCc/tTc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	248	573	0	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt																																																																														
RB1	5925	MSKCC	GRCh37	13	48881523	48881523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	163	619	0	ENST00000267163.4:c.245C>T	p.Ser82Leu	p.S82L	ENST00000267163	NM_000321.2	82	tCa/tTa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520156	9520156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	268	653	0	ENST00000353224.5:c.2113C>T	p.Pro705Ser	p.P705S	ENST00000353224	NM_177990.2	705	Cca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579408	7579414	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGC	CAGGGGC	-			P-0013274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	183	548	2	ENST00000269305.4:c.273_279del	p.Trp91CysfsTer30	p.W91Cfs*30	ENST00000269305	NM_001126112.2	91	tgGCCCCTG/tg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	57	255	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0013318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	287	511	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161957	47161957	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	97	406	0	ENST00000409792.3:c.4169C>A	p.Ser1390Ter	p.S1390*	ENST00000409792	NM_014159.6	1390	tCa/tAa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876359	35876359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	79	406	0	ENST00000303115.3:c.1151C>A	p.Ser384Tyr	p.S384Y	ENST00000303115	NM_002185.3	384	tCt/tAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046367	180046367	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0013318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	56	404	0	ENST00000261937.6:c.2648-1G>A		p.X883_splice	ENST00000261937	NM_182925.4	883																																																																															
WT1	7490	MSKCC	GRCh37	11	32414251	32414251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	143	535	0	ENST00000332351.3:c.1300C>T	p.Arg434Cys	p.R434C	ENST00000332351	NM_024426.4	434	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108137897	108137897	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	105	403	1	ENST00000278616.4:c.2467-1G>T		p.X823_splice	ENST00000278616	NM_000051.3	823																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81902827	81902827	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1471	191	738	0	ENST00000359376.3:c.488T>A	p.Leu163His	p.L163H	ENST00000359376	NM_002661.3	163	cTc/cAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	217	489	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	29	318	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	42	163	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	42	163	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244997	46244997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1186	152	739	0	ENST00000334344.6:c.3091C>T	p.Gln1031Ter	p.Q1031*	ENST00000334344	NM_152641.2	1031	Cag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266134	41266136	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	106	502	0	ENST00000349496.5:c.133_135delTCT	p.Ser45del	p.S45del	ENST00000349496	NM_001904.3	44	cCTTct/cct																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412470	63412470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1285	156	931	0	ENST00000330258.3:c.697G>A	p.Asp233Asn	p.D233N	ENST00000330258	NM_152424.3	233	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	43	164	0	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713470	40713470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	82	424	0	ENST00000373198.4:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000373198	NM_133170.3	1349	Cgt/Tgt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856664	111856664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	120	404	0	ENST00000341259.2:c.715C>T	p.Leu239Phe	p.L239F	ENST00000341259	NM_005475.2	239	Ctc/Ttc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141020	55141020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	46	537	0	ENST00000257290.5:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000257290	NM_006206.4	556	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	30143518	30143518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	27	106	0	ENST00000389048.3:c.8C>T	p.Ala3Val	p.A3V	ENST00000389048	NM_004304.4	3	gCc/gTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106162534	106162534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	61	448	1	ENST00000380013.4:c.3448C>T	p.His1150Tyr	p.H1150Y	ENST00000380013	NM_001127208.2	1150	Cat/Tat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549391	187549391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	95	656	0	ENST00000441802.2:c.4727C>T	p.Ala1576Val	p.A1576V	ENST00000441802	NM_005245.3	1576	gCc/gTc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876461	35876461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	44	492	0	ENST00000303115.3:c.1253C>T	p.Pro418Leu	p.P418L	ENST00000303115	NM_002185.3	418	cCa/cTa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123260433	123260433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	87	500	0	ENST00000358487.5:c.1468G>A	p.Gly490Ser	p.G490S	ENST00000358487	NM_000141.4	490	Ggt/Agt																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625223	69625223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	138	605	1	ENST00000334134.2:c.570G>A	p.Met190Ile	p.M190I	ENST00000334134	NM_005247.2	190	atG/atA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552663	18552663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	104	694	0	ENST00000266497.5:c.2074C>T	p.Pro692Ser	p.P692S	ENST00000266497		692	Cct/Tct																																																																														
AR	367	MSKCC	GRCh37	X	66937413	66937413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1078	140	730	0	ENST00000374690.3:c.2267C>T	p.Thr756Ile	p.T756I	ENST00000374690	NM_000044.3	756	aCc/aTc																																																																														
XIAP	331	MSKCC	GRCh37	X	123020155	123020155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	175	744	0	ENST00000355640.3:c.643C>T	p.Arg215Cys	p.R215C	ENST00000355640		215	Cgt/Tgt																																																																														
B2M	567	MSKCC	GRCh37	15	45007643	45007799	+	frameshift_variant	Frame_Shift_Del	DEL	CTCACGTCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTC	CTCACGTCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTC	-			P-0013343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	62	357	0	ENST00000558401.1:c.90_246del	p.Ser31IlefsTer20	p.S31Ifs*20	ENST00000558401	NM_004048.2	30	taCTCACGTCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTC/ta																																																																														
SDHA	6389	MSKCC	GRCh37	5	240484	240484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	40	181	0	ENST00000264932.6:c.1444C>T	p.Pro482Ser	p.P482S	ENST00000264932	NM_004168.2	482	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	61	110	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	448	558	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			14	154	157	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			14	154	157	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027081	71027081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	391	421	0	ENST00000318789.4:c.1246C>T	p.Pro416Ser	p.P416S	ENST00000318789	NM_032682.5	416	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	62	75	0				ENST00000310581	NM_198253.2																																																																																
IKZF1	10320	MSKCC	GRCh37	7	50467675	50467675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759124417		P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	99	499	0	ENST00000331340.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000331340	NM_006060.4	304	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434663	49434663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	369	567	0	ENST00000301067.7:c.6890C>T	p.Pro2297Leu	p.P2297L	ENST00000301067	NM_003482.3	2297	cCt/cTt																																																																														
CBL	867	MSKCC	GRCh37	11	119149241	119149241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	503	704	0	ENST00000264033.4:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000264033	NM_005188.3	417	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445530	49445530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	627	453	0	ENST00000301067.7:c.1936C>T	p.Pro646Ser	p.P646S	ENST00000301067	NM_003482.3	646	Ccc/Tcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971187	21971188	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	157	167	0	ENST00000304494.5:c.170_171delinsTT	p.Ala57Val	p.A57V	ENST00000304494	NM_000077.4	57	gCC/gTT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261061	16261061	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	254	325	0	ENST00000375759.3:c.8326A>T	p.Arg2776Ter	p.R2776*	ENST00000375759	NM_015001.2	2776	Aga/Tga																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182744	38182744	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	452	582	1	ENST00000396334.3:c.897G>A	p.Trp299Ter	p.W299*	ENST00000396334	NM_002468.4	299	tgG/tgA																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643923	52643923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	108	378	0	ENST00000394830.3:c.1973T>C	p.Met658Thr	p.M658T	ENST00000394830	NM_018313.4	658	aTg/aCg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289058	33289058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	564	601	0	ENST00000374542.5:c.494C>T	p.Ser165Phe	p.S165F	ENST00000374542	NM_001141970.1	165	tCc/tTc																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514332	69514332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1525	141	421	0	ENST00000294312.3:c.349G>A	p.Glu117Lys	p.E117K	ENST00000294312	NM_005117.2	117	Gag/Aag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573933	18573933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	63	455	0	ENST00000266497.5:c.2251G>A	p.Asp751Asn	p.D751N	ENST00000266497		751	Gat/Aat																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610525	81610525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	216	553	0	ENST00000298171.2:c.2123G>A	p.Gly708Glu	p.G708E	ENST00000298171	NM_000369.2	708	gGg/gAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969953	81969953	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	438	810	1	ENST00000359376.3:c.3022C>T	p.Gln1008Ter	p.Q1008*	ENST00000359376	NM_002661.3	1008	Cag/Tag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10257168	10257168	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	294	337	0	ENST00000340748.4:c.2705T>G	p.Met902Arg	p.M902R	ENST00000340748		902	aTg/aGg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10277330	10277330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	254	756	0	ENST00000340748.4:c.787G>T	p.Asp263Tyr	p.D263Y	ENST00000340748		263	Gac/Tac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141561	11141561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	182	531	1	ENST00000344626.4:c.3538C>T	p.Pro1180Ser	p.P1180S	ENST00000344626	NM_003072.3	1180	Cct/Tct																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017770	31017770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	126	461	1	ENST00000375687.4:c.632C>T	p.Ala211Val	p.A211V	ENST00000375687	NM_015338.5	211	gCc/gTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980730	40980730	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	39	351	0	ENST00000373198.4:c.1756A>G	p.Ile586Val	p.I586V	ENST00000373198	NM_133170.3	586	Att/Gtt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923819	39923819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	268	435	3	ENST00000378444.4:c.3272C>T	p.Pro1091Leu	p.P1091L	ENST00000378444	NM_001123385.1	1091	cCc/cTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974373	93974373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	186	866	0	ENST00000369303.4:c.1681del	p.Val561LeufsTer3	p.V561Lfs*3	ENST00000369303	NM_004440.3	561	Gtt/tt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	104	209	1				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	723	528	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	190	631	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935280	36935280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	311	842	2	ENST00000361632.4:c.1447G>A	p.Gly483Arg	p.G483R	ENST00000361632		483	Ggg/Agg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675205	30675205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	219	564	1	ENST00000376406.3:c.3040G>T	p.Ala1014Ser	p.A1014S	ENST00000376406	NM_014641.2	1014	Gct/Tct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647515	117647515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	230	586	0	ENST00000368508.3:c.5429C>T	p.Ser1810Phe	p.S1810F	ENST00000368508	NM_002944.2	1810	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970906	21970906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	189	452	0	ENST00000304494.5:c.452C>T	p.Pro151Leu	p.P151L	ENST00000304494	NM_000077.4	151	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970906	21970906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	189	452	0	ENST00000304494.5:c.452C>T	p.Pro151Leu	p.P151L	ENST00000304494	NM_000077.4	151	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971106	21971106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	92	144	0	ENST00000304494.5:c.252C>A	p.Asp84Glu	p.D84E	ENST00000304494	NM_000077.4	84	gaC/gaA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971106	21971106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	92	144	0	ENST00000304494.5:c.252C>A	p.Asp84Glu	p.D84E	ENST00000304494	NM_000077.4	84	gaC/gaA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971163	21971163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	117	137	0	ENST00000361570.3:c.361C>T	p.Pro121Ser	p.P121S	ENST00000361570	NM_058195.3	121	Cca/Tca																																																																														
PAK1	5058	MSKCC	GRCh37	11	77054863	77054863	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	219	629	0	ENST00000356341.3:c.998+1G>A		p.X333_splice	ENST00000356341	NM_002576.4	333																																																																															
TSHR	7253	MSKCC	GRCh37	14	81422152	81422152	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	218	416	0	ENST00000298171.2:c.128A>G	p.Asp43Gly	p.D43G	ENST00000298171	NM_000369.2	43	gAt/gGt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472433	88472433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	162	454	0	ENST00000360948.2:c.2122G>A	p.Asp708Asn	p.D708N	ENST00000360948	NM_001012338.2	708	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21968235	21968237	+	missense_variant	Missense_Mutation	ONP	GGG	GGG	AGA			P-0013448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	128	318	0	ENST00000304494.5:c.462_464delinsTCT	p.Pro155Leu	p.P155L	ENST00000304494	NM_000077.4	154	atCCCc/atTCTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	274	178	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	274	178	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0013593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	1100	550	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	274	178	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937711	36937711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	438	803	2	ENST00000361632.4:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000361632		343	Cgg/Tgg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986514	36986514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	282	684	0	ENST00000354822.5:c.1175G>T	p.Cys392Phe	p.C392F	ENST00000354822	NM_001079668.2	392	tGc/tTc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615769	1615769	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1439	461	1031	4	ENST00000344749.5:c.1502A>T	p.Glu501Val	p.E501V	ENST00000344749	NM_001136139.2	501	gAg/gTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794699	42794699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	311	593	0	ENST00000575354.2:c.1779G>A	p.Met593Ile	p.M593I	ENST00000575354	NM_015125.3	593	atG/atA																																																																														
TERT	7015	MSKCC	GRCh37	5	1279465	1279465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1394	339	525	2	ENST00000310581.5:c.2071C>T	p.Arg691Cys	p.R691C	ENST00000310581	NM_198253.2	691	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	265	476	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	124	144	0				ENST00000310581	NM_198253.2																																																																																
MEN1	4221	MSKCC	GRCh37	11	64573747	64573747	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	251	496	0	ENST00000337652.1:c.1021G>T	p.Glu341Ter	p.E341*	ENST00000337652	NM_130803.2	341	Gaa/Taa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562324	21562324	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	34	349	0	ENST00000382592.4:c.1595A>T	p.Asp532Val	p.D532V	ENST00000382592	NM_014572.2	532	gAc/gTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554551	63554551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	64	400	0	ENST00000307078.5:c.188G>A	p.Gly63Glu	p.G63E	ENST00000307078	NM_004655.3	63	gGg/gAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11107001	11107001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	85	474	1	ENST00000344626.4:c.1706G>A	p.Arg569Gln	p.R569Q	ENST00000344626	NM_003072.3	569	cGg/cAg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267710	198267710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	124	418	1	ENST00000335508.6:c.1769G>T	p.Arg590Ile	p.R590I	ENST00000335508	NM_012433.2	590	aGa/aTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	79	226	0				ENST00000310581	NM_198253.2																																																																																
HIST1H3E	8353	MSKCC	GRCh37	6	26225608	26225608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1892	278	1207	1	ENST00000360408.1:c.226G>T	p.Ala76Ser	p.A76S	ENST00000360408	NM_003532.2	76	Gct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486028	8486028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	201	638	1	ENST00000356435.5:c.2789C>A	p.Thr930Asn	p.T930N	ENST00000356435		930	aCc/aAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045190	47045190	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	166	518	1	ENST00000329236.7:c.2196+1G>T		p.X732_splice	ENST00000329236	NM_001204466.1	732																																																																															
KDR	3791	MSKCC	GRCh37	4	55961109	55961110	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0013653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	147	507	0	ENST00000263923.4:c.2830_2831delinsA	p.Arg944AsnfsTer16	p.R944Nfs*16	ENST00000263923	NM_002253.2	944	CGa/Aa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	362	552	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	140	337	1				ENST00000310581	NM_198253.2																																																																																
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	138	511	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0013765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	156	374	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877330	40877330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	139	366	0	ENST00000373198.4:c.2366G>A	p.Arg789Lys	p.R789K	ENST00000373198	NM_133170.3	789	aGg/aAg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029554	14029554	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147105770		P-0013765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	98	285	0	ENST00000311895.7:c.1765C>T	p.Arg589Trp	p.R589W	ENST00000311895	NM_005236.2	589	Cgg/Tgg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546655	9546655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	300	810	0	ENST00000353224.5:c.1367G>A	p.Gly456Glu	p.G456E	ENST00000353224	NM_177990.2	456	gGg/gAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2949781	2949781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	215	588	0	ENST00000396946.4:c.3163G>A	p.Glu1055Lys	p.E1055K	ENST00000396946	NM_032415.4	1055	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	259	535	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54948558	54948558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	108	542	0	ENST00000312783.6:c.760C>T	p.His254Tyr	p.H254Y	ENST00000312783	NM_198436.1	254	Cat/Tat																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176175826	176175826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	19	221	0	ENST00000367669.3:c.289G>T	p.Ala97Ser	p.A97S	ENST00000367669	NM_022457.5	97	Gcc/Tcc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125514457	125514457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	62	489	0	ENST00000428830.2:c.1152G>T	p.Leu384Phe	p.L384F	ENST00000428830	NM_001114121.2	384	ttG/ttT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	50	464	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	50	464	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
PARP1	142	MSKCC	GRCh37	1	226567800	226567800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	74	550	0	ENST00000366794.5:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000366794	NM_001618.3	456	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55953864	55953864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	91	582	0	ENST00000263923.4:c.3572G>A	p.Gly1191Glu	p.G1191E	ENST00000263923	NM_002253.2	1191	gGa/gAa																																																																														
STK40	83931	MSKCC	GRCh37	1	36808989	36808989	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	75	688	0	ENST00000373129.3:c.1065G>C	p.Met355Ile	p.M355I	ENST00000373129	NM_032017.1	355	atG/atC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	50	464	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811604	102811604	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1197	163	808	0	ENST00000307046.8:c.580G>T	p.Gly194Ter	p.G194*	ENST00000307046	NM_001111285.1	194	Gga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134977861	134977861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	129	510	0	ENST00000398015.3:c.2854C>A	p.Leu952Met	p.L952M	ENST00000398015	NM_004441.4	952	Ctg/Atg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9781644	9781644	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	193	427	0	ENST00000377346.4:c.1954C>G	p.Arg652Gly	p.R652G	ENST00000377346	NM_005026.3	652	Cgc/Ggc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106741	27106741	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	235	560	0	ENST00000324856.7:c.6352G>C	p.Val2118Leu	p.V2118L	ENST00000324856	NM_006015.4	2118	Gtc/Ctc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366634	40366634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	113	475	0	ENST00000397332.2:c.563G>T	p.Gly188Val	p.G188V	ENST00000397332	NM_001033082.2	188	gGg/gTg																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46597608	46597608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	50	576	0	ENST00000262741.5:c.17G>T	p.Trp6Leu	p.W6L	ENST00000262741	NM_003629.3	6	tGg/tTg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400952	72400952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	608	889	1	ENST00000357731.5:c.219C>A	p.Asn73Lys	p.N73K	ENST00000357731	NM_173808.2	73	aaC/aaA																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462998	120462998	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	56	552	0	ENST00000256646.2:c.5333C>G	p.Ser1778Ter	p.S1778*	ENST00000256646	NM_024408.3	1778	tCa/tGa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464978	120464978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	43	389	0	ENST00000256646.2:c.5094C>G	p.Ile1698Met	p.I1698M	ENST00000256646	NM_024408.3	1698	atC/atG																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120483192	120483192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	89	419	0	ENST00000256646.2:c.3169G>T	p.Gly1057Trp	p.G1057W	ENST00000256646	NM_024408.3	1057	Ggg/Tgg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745946	162745946	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	50	605	0	ENST00000367921.3:c.2069T>C	p.Met690Thr	p.M690T	ENST00000367921	NM_006182.2	690	aTg/aCg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651522	206651522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	50	384	0	ENST00000367120.3:c.832G>T	p.Val278Leu	p.V278L	ENST00000367120	NM_014002.3	278	Gtg/Ttg																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612810	228612810	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	263	986	0	ENST00000366696.1:c.217C>G	p.Arg73Gly	p.R73G	ENST00000366696	NM_003493.2	73	Cgc/Ggc																																																																														
FH	2271	MSKCC	GRCh37	1	241671907	241671907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	93	454	0	ENST00000366560.3:c.734G>T	p.Gly245Val	p.G245V	ENST00000366560	NM_000143.3	245	gGg/gTg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243727087	243727087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	137	559	0	ENST00000263826.5:c.883G>A	p.Glu295Lys	p.E295K	ENST00000263826	NM_005465.4	295	Gaa/Aaa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106098	8106098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	57	329	0	ENST00000346208.3:c.918G>T	p.Arg306Ser	p.R306S	ENST00000346208		306	agG/agT																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111484	8111484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	49	639	0	ENST00000346208.3:c.970A>G	p.Thr324Ala	p.T324A	ENST00000346208		324	Aca/Gca																																																																														
TET1	80312	MSKCC	GRCh37	10	70441155	70441155	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	130	438	0	ENST00000373644.4:c.4825-1G>T		p.X1609_splice	ENST00000373644	NM_030625.2	1609																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711933	89711933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	77	461	0	ENST00000371953.3:c.551A>G	p.Asn184Ser	p.N184S	ENST00000371953	NM_000314.4	184	aAt/aGt																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741834	17741834	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	20	165	0	ENST00000250003.3:c.505G>C	p.Ala169Pro	p.A169P	ENST00000250003	NM_002478.4	169	Gcc/Ccc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742458	17742458	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	62	557	0	ENST00000250003.3:c.640A>T	p.Ser214Cys	p.S214C	ENST00000250003	NM_002478.4	214	Agc/Tgc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17743018	17743018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	105	416	0	ENST00000250003.3:c.926C>G	p.Ala309Gly	p.A309G	ENST00000250003	NM_002478.4	309	gCg/gGg																																																																														
WT1	7490	MSKCC	GRCh37	11	32438071	32438071	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	133	522	0	ENST00000332351.3:c.966C>A	p.Ser322Arg	p.S322R	ENST00000332351	NM_024426.4	322	agC/agA																																																																														
PGR	5241	MSKCC	GRCh37	11	100912834	100912834	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	93	548	0	ENST00000325455.5:c.2489-1G>T		p.X830_splice	ENST00000325455	NM_001202474.3	830																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374220	118374220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	80	651	0	ENST00000534358.1:c.7613C>T	p.Ser2538Phe	p.S2538F	ENST00000534358	NM_005933.3	2538	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715720	18715720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	149	567	0	ENST00000266497.5:c.3551C>G	p.Pro1184Arg	p.P1184R	ENST00000266497		1184	cCt/cGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427080	49427080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	70	423	0	ENST00000301067.7:c.11408G>T	p.Gly3803Val	p.G3803V	ENST00000301067	NM_003482.3	3803	gGc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434883	49434883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	126	568	0	ENST00000301067.7:c.6670G>T	p.Gly2224Trp	p.G2224W	ENST00000301067	NM_003482.3	2224	Ggg/Tgg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864253	57864253	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	63	796	0	ENST00000228682.2:c.1730C>G	p.Ser577Cys	p.S577C	ENST00000228682	NM_005269.2	577	tCc/tGc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112919909	112919909	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	70	215	0	ENST00000351677.2:c.1124A>T	p.Tyr375Phe	p.Y375F	ENST00000351677	NM_002834.3	375	tAt/tTt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112490	115112490	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	74	439	0	ENST00000257566.3:c.1250del	p.Phe417SerfsTer215	p.F417Sfs*215	ENST00000257566	NM_016569.3	417	tTc/tc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431442	121431442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	122	508	0	ENST00000257555.6:c.646C>A	p.Gln216Lys	p.Q216K	ENST00000257555		216	Cag/Aag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432181	121432181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	29	457	0	ENST00000257555.6:c.928C>A	p.Pro310Thr	p.P310T	ENST00000257555		310	Cct/Act																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563047	21563047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	60	488	2	ENST00000382592.4:c.872C>T	p.Thr291Met	p.T291M	ENST00000382592	NM_014572.2	291	aCg/aTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28963941	28963941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	61	683	1	ENST00000282397.4:c.1961C>A	p.Thr654Lys	p.T654K	ENST00000282397	NM_002019.4	654	aCa/aAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32890647	32890647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	59	356	1	ENST00000380152.3:c.50C>G	p.Thr17Arg	p.T17R	ENST00000380152		17	aCa/aGa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041335	42041335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	258	878	0	ENST00000219905.7:c.5530G>T	p.Ala1844Ser	p.A1844S	ENST00000219905	NM_001164273.1	1844	Gct/Tct																																																																														
MGA	23269	MSKCC	GRCh37	15	42041984	42041984	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	195	848	0	ENST00000219905.7:c.6179A>C	p.Gln2060Pro	p.Q2060P	ENST00000219905	NM_001164273.1	2060	cAa/cCa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472574	88472574	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	139	541	0	ENST00000360948.2:c.1981A>T	p.Ser661Cys	p.S661C	ENST00000360948	NM_001012338.2	661	Agt/Tgt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472667	88472667	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	16	262	0	ENST00000360948.2:c.1890-2A>T		p.X630_splice	ENST00000360948	NM_001012338.2	630																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670433	88670433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	51	604	1	ENST00000360948.2:c.1253C>A	p.Pro418His	p.P418H	ENST00000360948	NM_001012338.2	418	cCt/cAt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799332	88799332	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	57	620	0	ENST00000360948.2:c.53T>A	p.Leu18Gln	p.L18Q	ENST00000360948	NM_001012338.2	18	cTg/cAg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434796	99434796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	114	448	0	ENST00000268035.6:c.883G>T	p.Gly295Trp	p.G295W	ENST00000268035	NM_000875.3	295	Ggg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857591	9857591	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	92	582	0	ENST00000330684.3:c.3810C>G	p.Asp1270Glu	p.D1270E	ENST00000330684	NM_001134407.1	1270	gaC/gaG																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934820	9934820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	79	796	0	ENST00000330684.3:c.1470C>A	p.Asn490Lys	p.N490K	ENST00000330684	NM_001134407.1	490	aaC/aaA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934900	9934900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	73	527	0	ENST00000330684.3:c.1390C>G	p.Leu464Val	p.L464V	ENST00000330684	NM_001134407.1	464	Ctg/Gtg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646791	23646791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	167	722	0	ENST00000261584.4:c.1076G>T	p.Ser359Ile	p.S359I	ENST00000261584	NM_024675.3	359	aGt/aTt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654599	67654599	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	120	623	3	ENST00000264010.4:c.1087-1G>T		p.X363_splice	ENST00000264010	NM_006565.3	363																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81929422	81929422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	178	777	1	ENST00000359376.3:c.1083G>T	p.Trp361Cys	p.W361C	ENST00000359376	NM_002661.3	361	tgG/tgT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346628	89346628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	144	590	0	ENST00000301030.4:c.6322G>T	p.Gly2108Cys	p.G2108C	ENST00000301030	NM_001256183.1	2108	Ggc/Tgc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980312	7980312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	30	339	0	ENST00000319144.4:c.1271A>G	p.Tyr424Cys	p.Y424C	ENST00000319144	NM_001139.2	424	tAc/tGc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984214	7984214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	149	602	0	ENST00000319144.4:c.515C>A	p.Pro172His	p.P172H	ENST00000319144	NM_001139.2	172	cCc/cAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983722	15983722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	74	389	0	ENST00000268712.3:c.3400G>T	p.Gly1134Cys	p.G1134C	ENST00000268712	NM_006311.3	1134	Ggt/Tgt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40379606	40379606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1579	102	1005	2	ENST00000293328.3:c.226G>T	p.Val76Leu	p.V76L	ENST00000293328	NM_012448.3	76	Gtg/Ttg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804398	46804398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	67	508	0	ENST00000290295.7:c.609C>G	p.Ser203Arg	p.S203R	ENST00000290295	NM_006361.5	203	agC/agG																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58725428	58725428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1328	148	670	0	ENST00000305921.3:c.1002G>T	p.Glu334Asp	p.E334D	ENST00000305921	NM_003620.3	334	gaG/gaT																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59876658	59876658	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	112	282	0	ENST00000259008.2:c.1143G>C	p.Met381Ile	p.M381I	ENST00000259008	NM_032043.2	381	atG/atC																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885986	59885986	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	116	511	1	ENST00000259008.2:c.760A>T	p.Lys254Ter	p.K254*	ENST00000259008	NM_032043.2	254	Aag/Tag																																																																														
CD79B	974	MSKCC	GRCh37	17	62007249	62007249	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	50	462	0	ENST00000392795.3:c.434-1G>T		p.X145_splice	ENST00000392795	NM_001039933.1	145																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63533913	63533913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	63	285	0	ENST00000307078.5:c.1241G>T	p.Arg414Leu	p.R414L	ENST00000307078	NM_004655.3	414	cGg/cTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119034	70119035	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	71	471	0	ENST00000245479.2:c.606_607delinsAT	p.Ile203Phe	p.I203F	ENST00000245479	NM_000346.3	202	gcCAtc/gcATtc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119697	70119697	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1190	75	654	0	ENST00000245479.2:c.701del	p.Pro234HisfsTer19	p.P234Hfs*19	ENST00000245479	NM_000346.3	233	ggC/gg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733239	74733239	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	74	554	1	ENST00000359995.5:c.4A>T	p.Ser2Cys	p.S2C	ENST00000359995	NM_001195427.1	2	Agc/Tgc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39576695	39576695	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	111	339	0	ENST00000262039.4:c.984+1G>T		p.X328_splice	ENST00000262039	NM_002647.2	328																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39607485	39607485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	128	592	0	ENST00000262039.4:c.1563G>T	p.Met521Ile	p.M521I	ENST00000262039	NM_002647.2	521	atG/atT																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222937	5222937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	64	389	1	ENST00000357368.4:c.2866G>A	p.Ala956Thr	p.A956T	ENST00000357368	NM_002850.3	956	Gcc/Acc																																																																														
INSR	3643	MSKCC	GRCh37	19	7117192	7117192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	111	644	1	ENST00000302850.5:c.4024G>T	p.Gly1342Cys	p.G1342C	ENST00000302850	NM_000208.2	1342	Ggc/Tgc																																																																														
INSR	3643	MSKCC	GRCh37	19	7141781	7141781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	132	696	0	ENST00000302850.5:c.2589G>T	p.Glu863Asp	p.E863D	ENST00000302850	NM_000208.2	863	gaG/gaT																																																																														
INSR	3643	MSKCC	GRCh37	19	7142937	7142937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	97	602	2	ENST00000302850.5:c.2432G>T	p.Gly811Val	p.G811V	ENST00000302850	NM_000208.2	811	gGc/gTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272206	15272206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	98	283	0	ENST00000263388.2:c.6233G>T	p.Arg2078Leu	p.R2078L	ENST00000263388	NM_000435.2	2078	cGg/cTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15278138	15278138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	155	683	2	ENST00000263388.2:c.5284G>T	p.Val1762Leu	p.V1762L	ENST00000263388	NM_000435.2	1762	Gtg/Ttg																																																																														
CCNE1	898	MSKCC	GRCh37	19	30303465	30303465	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	39	148	0	ENST00000262643.3:c.3G>T	p.Met1?	p.M1?	ENST00000262643	NM_001238.2	1	atG/atT																																																																														
AXL	558	MSKCC	GRCh37	19	41765760	41765760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	75	375	0	ENST00000301178.4:c.2636C>A	p.Pro879His	p.P879H	ENST00000301178	NM_021913.4	879	cCt/cAt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905378	50905378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	70	873	0	ENST00000440232.2:c.586G>A	p.Glu196Lys	p.E196K	ENST00000440232	NM_002691.3	196	Gag/Aag																																																																														
ALK	238	MSKCC	GRCh37	2	29420448	29420448	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	171	668	0	ENST00000389048.3:c.4033G>C	p.Gly1345Arg	p.G1345R	ENST00000389048	NM_004304.4	1345	Gga/Cga																																																																														
ALK	238	MSKCC	GRCh37	2	29430115	29430115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	124	581	1	ENST00000389048.3:c.3860G>T	p.Gly1287Val	p.G1287V	ENST00000389048	NM_004304.4	1287	gGc/gTc																																																																														
ALK	238	MSKCC	GRCh37	2	29551338	29551338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	59	486	0	ENST00000389048.3:c.1292C>A	p.Pro431Gln	p.P431Q	ENST00000389048	NM_004304.4	431	cCa/cAa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99156092	99156092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	62	540	0	ENST00000074304.5:c.772G>T	p.Val258Leu	p.V258L	ENST00000074304	NM_001134224.1	258	Gtg/Ttg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735327	204735327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	74	260	0	ENST00000302823.3:c.128C>T	p.Pro43Leu	p.P43L	ENST00000302823	NM_005214.4	43	cCt/cTt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661203	227661203	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	125	580	0	ENST00000305123.5:c.2252A>G	p.Tyr751Cys	p.Y751C	ENST00000305123	NM_005544.2	751	tAc/tGc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561133	9561133	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	170	578	0	ENST00000353224.5:c.649T>A	p.Trp217Arg	p.W217R	ENST00000353224	NM_177990.2	217	Tgg/Agg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31368200	31368200	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	100	567	0	ENST00000328111.2:c.71A>C	p.Asn24Thr	p.N24T	ENST00000328111	NM_006892.3	24	aAc/aCc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376663	31376663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	40	430	0	ENST00000328111.2:c.658G>T	p.Gly220Trp	p.G220W	ENST00000328111	NM_006892.3	220	Ggg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743858	40743858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	295	563	0	ENST00000373198.4:c.3137del	p.Arg1046ProfsTer54	p.R1046Pfs*54	ENST00000373198	NM_133170.3	1046	cGc/cc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743887	40743887	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	103	626	0	ENST00000373198.4:c.3108A>T	p.Glu1036Asp	p.E1036D	ENST00000373198	NM_133170.3	1036	gaA/gaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944384	40944384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	56	665	1	ENST00000373198.4:c.2118G>T	p.Gln706His	p.Q706H	ENST00000373198	NM_133170.3	706	caG/caT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076937	41076937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	86	633	1	ENST00000373198.4:c.1483G>T	p.Gly495Trp	p.G495W	ENST00000373198	NM_133170.3	495	Ggg/Tgg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262333	46262333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1385	118	818	2	ENST00000371998.3:c.917G>T	p.Ser306Ile	p.S306I	ENST00000371998		306	aGt/aTt																																																																														
ERG	2078	MSKCC	GRCh37	21	39755614	39755614	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	88	615	0	ENST00000288319.7:c.1151A>G	p.Lys384Arg	p.K384R	ENST00000288319	NM_182918.3	384	aAg/aGg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42840434	42840434	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	81	492	0	ENST00000398585.3:c.1314G>C	p.Lys438Asn	p.K438N	ENST00000398585	NM_001135099.1	438	aaG/aaC																																																																														
EP300	2033	MSKCC	GRCh37	22	41562664	41562664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	67	377	0	ENST00000263253.7:c.3868G>T	p.Ala1290Ser	p.A1290S	ENST00000263253	NM_001429.3	1290	Gct/Tct																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641226	12641226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	84	750	0	ENST00000251849.4:c.1072G>T	p.Gly358Cys	p.G358C	ENST00000251849	NM_002880.3	358	Ggc/Tgc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30664712	30664712	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	81	393	0	ENST00000359013.4:c.116A>G	p.Lys39Arg	p.K39R	ENST00000359013	NM_001024847.2	39	aAa/aGa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713423	30713423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	108	431	0	ENST00000359013.4:c.823G>C	p.Val275Leu	p.V275L	ENST00000359013	NM_001024847.2	275	Gtg/Ctg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729969	30729969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200958264		P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	63	389	0	ENST00000359013.4:c.1565G>A	p.Arg522Gln	p.R522Q	ENST00000359013	NM_001024847.2	522	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164121	47164121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	46	359	1	ENST00000409792.3:c.2005A>T	p.Ile669Leu	p.I669L	ENST00000409792	NM_014159.6	669	Ata/Tta																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643881	52643881	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	98	483	0	ENST00000394830.3:c.2015A>T	p.Tyr672Phe	p.Y672F	ENST00000394830	NM_018313.4	672	tAt/tTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644668	134644669	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	115	389	1	ENST00000398015.3:c.69_70delinsTT	p.Met23_Asp24delinsIleTyr	p.M23_D24delinsIY	ENST00000398015	NM_004441.4	23	atGGac/atTTac																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670492	134670492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	111	516	0	ENST00000398015.3:c.403C>T	p.Leu135Phe	p.L135F	ENST00000398015	NM_004441.4	135	Ctc/Ttc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851693	134851693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	94	464	0	ENST00000398015.3:c.1099C>A	p.Arg367Ser	p.R367S	ENST00000398015	NM_004441.4	367	Cgc/Agc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134881021	134881021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	53	348	0	ENST00000398015.3:c.1584C>A	p.Asp528Glu	p.D528E	ENST00000398015	NM_004441.4	528	gaC/gaA																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134884836	134884836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	45	580	0	ENST00000398015.3:c.1612C>A	p.Gln538Lys	p.Q538K	ENST00000398015	NM_004441.4	538	Cag/Aag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134977881	134977881	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	47	562	0	ENST00000398015.3:c.2875del	p.Ala959GlnfsTer8	p.A959Qfs*8	ENST00000398015	NM_004441.4	958	ttG/tt																																																																														
ATR	545	MSKCC	GRCh37	3	142184020	142184020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	135	591	0	ENST00000350721.4:c.6960G>T	p.Lys2320Asn	p.K2320N	ENST00000350721	NM_001184.3	2320	aaG/aaT																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430989	181430989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	285	515	0	ENST00000325404.1:c.841G>C	p.Ala281Pro	p.A281P	ENST00000325404	NM_003106.3	281	Gcc/Ccc																																																																														
BCL6	604	MSKCC	GRCh37	3	187446986	187446986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	158	660	0	ENST00000232014.4:c.1207C>T	p.Leu403Phe	p.L403F	ENST00000232014	NM_001130845.1	403	Ctt/Ttt																																																																														
BCL6	604	MSKCC	GRCh37	3	187447002	187447002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	159	676	0	ENST00000232014.4:c.1191G>T	p.Gln397His	p.Q397H	ENST00000232014	NM_001130845.1	397	caG/caT																																																																														
BCL6	604	MSKCC	GRCh37	3	187447175	187447175	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	121	487	0	ENST00000232014.4:c.1018C>T	p.Gln340Ter	p.Q340*	ENST00000232014	NM_001130845.1	340	Cag/Tag																																																																														
TP63	8626	MSKCC	GRCh37	3	189590764	189590764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	194	533	1	ENST00000264731.3:c.1329C>A	p.His443Gln	p.H443Q	ENST00000264731	NM_003722.4	443	caC/caA																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806204	1806204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	69	621	0	ENST00000260795.2:c.1223C>G	p.Ser408Cys	p.S408C	ENST00000260795		408	tCc/tGc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129889	55129889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	720	707	0	ENST00000257290.5:c.423G>T	p.Glu141Asp	p.E141D	ENST00000257290	NM_006206.4	141	gaG/gaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55955115	55955115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	140	542	2	ENST00000263923.4:c.3430C>A	p.His1144Asn	p.H1144N	ENST00000263923	NM_002253.2	1144	Cac/Aac																																																																														
KDR	3791	MSKCC	GRCh37	4	55968166	55968167	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	799	642	2	ENST00000263923.4:c.2163_2164delinsAT	p.Asn721_Leu722delinsLysPhe	p.N721_L722delinsKF	ENST00000263923	NM_002253.2	721	aaCCtc/aaATtc																																																																														
KDR	3791	MSKCC	GRCh37	4	55976822	55976822	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1235	132	542	0	ENST00000263923.4:c.1090T>C	p.Trp364Arg	p.W364R	ENST00000263923	NM_002253.2	364	Tgg/Cgg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045914	143045914	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	44	383	0	ENST00000262992.4:c.1721-1G>C		p.X574_splice	ENST00000262992	NM_001101669.1	574																																																																															
TERT	7015	MSKCC	GRCh37	5	1293710	1293710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	41	308	1	ENST00000310581.5:c.1291C>A	p.Pro431Thr	p.P431T	ENST00000310581	NM_198253.2	431	Ccc/Acc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874550	35874550	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	71	714	0	ENST00000303115.3:c.707-1G>T		p.X236_splice	ENST00000303115	NM_002185.3	236																																																																															
IL7R	3575	MSKCC	GRCh37	5	35876335	35876335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	142	432	1	ENST00000303115.3:c.1127C>A	p.Ala376Glu	p.A376E	ENST00000303115	NM_002185.3	376	gCa/gAa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950170	38950170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	54	468	0	ENST00000357387.3:c.3780T>A	p.Ser1260Arg	p.S1260R	ENST00000357387	NM_152756.3	1260	agT/agA																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449755	149449755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	89	407	0	ENST00000286301.3:c.1309C>T	p.His437Tyr	p.H437Y	ENST00000286301	NM_005211.3	437	Cac/Tac																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460427	149460427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	189	749	1	ENST00000286301.3:c.210C>A	p.Ser70Arg	p.S70R	ENST00000286301	NM_005211.3	70	agC/agA																																																																														
NPM1	4869	MSKCC	GRCh37	5	170832307	170832307	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	120	661	0	ENST00000296930.5:c.671G>T	p.Gly224Val	p.G224V	ENST00000296930	NM_002520.6	224	gGa/gTa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481448	20481448	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	98	400	0	ENST00000346618.3:c.517C>G	p.Pro173Ala	p.P173A	ENST00000346618	NM_001949.4	173	Ccc/Gcc																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158413	26158413	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	60	452	0	ENST00000289316.2:c.16A>T	p.Lys6Ter	p.K6*	ENST00000289316	NM_138720.2	6	Aag/Tag																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197206	26197206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2168	134	1146	0	ENST00000356476.2:c.273G>A	p.Met91Ile	p.M91I	ENST00000356476		91	atG/atA																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778180	27778180	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1921	270	1316	0	ENST00000369163.2:c.329T>A	p.Leu110Gln	p.L110Q	ENST00000369163	NM_003536.2	110	cTg/cAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178643	32178643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	97	567	0	ENST00000375023.3:c.2751C>G	p.His917Gln	p.H917Q	ENST00000375023	NM_004557.3	917	caC/caG																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32183037	32183037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	120	593	1	ENST00000375023.3:c.1987G>T	p.Asp663Tyr	p.D663Y	ENST00000375023	NM_004557.3	663	Gac/Tac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32183123	32183123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	93	626	0	ENST00000375023.3:c.1901G>T	p.Cys634Phe	p.C634F	ENST00000375023	NM_004557.3	634	tGc/tTc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287163	33287163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	55	465	0	ENST00000374542.5:c.1934G>T	p.Gly645Val	p.G645V	ENST00000374542	NM_001141970.1	645	gGa/gTa																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997777	149997777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	59	524	0	ENST00000253339.5:c.2690G>T	p.Arg897Ile	p.R897I	ENST00000253339		897	aGa/aTa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005729	150005729	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	54	229	0	ENST00000253339.5:c.497-1G>A		p.X166_splice	ENST00000253339		166																																																																															
CARD11	84433	MSKCC	GRCh37	7	2959038	2959038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	137	427	1	ENST00000396946.4:c.2478C>A	p.Asp826Glu	p.D826E	ENST00000396946	NM_032415.4	826	gaC/gaA																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962825	2962825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	119	520	0	ENST00000396946.4:c.2083del	p.Val695SerfsTer21	p.V695Sfs*21	ENST00000396946	NM_032415.4	695	Gtc/tc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729898	41729898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	201	820	1	ENST00000242208.4:c.631G>A	p.Val211Ile	p.V211I	ENST00000242208	NM_002192.2	211	Gta/Ata																																																																														
HGF	3082	MSKCC	GRCh37	7	81334974	81334974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	85	515	0	ENST00000222390.5:c.1853G>T	p.Gly618Val	p.G618V	ENST00000222390	NM_000601.4	618	gGc/gTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81355224	81355224	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	134	593	0	ENST00000222390.5:c.1150G>T	p.Asp384Tyr	p.D384Y	ENST00000222390	NM_000601.4	384	Gat/Tat																																																																														
HGF	3082	MSKCC	GRCh37	7	81372688	81372688	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	286	575	0	ENST00000222390.5:c.846C>G	p.Tyr282Ter	p.Y282*	ENST00000222390	NM_000601.4	282	taC/taG																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508232	106508232	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	30	243	0	ENST00000359195.3:c.226C>G	p.Leu76Val	p.L76V	ENST00000359195	NM_002649.2	76	Ctg/Gtg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508730	106508730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	41	474	0	ENST00000359195.3:c.724G>T	p.Gly242Cys	p.G242C	ENST00000359195	NM_002649.2	242	Ggc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140449179	140449179	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	26	220	0	ENST00000288602.6:c.1900A>T	p.Ser634Cys	p.S634C	ENST00000288602	NM_004333.4	634	Agc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140550008	140550008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	140	461	0	ENST00000288602.6:c.143G>A	p.Trp48Ter	p.W48*	ENST00000288602	NM_004333.4	48	tGg/tAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859850	151859850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	51	529	0	ENST00000262189.6:c.10812G>C	p.Lys3604Asn	p.K3604N	ENST00000262189	NM_170606.2	3604	aaG/aaC																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371914	55371914	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	16	160	0	ENST00000297316.4:c.604C>A	p.His202Asn	p.H202N	ENST00000297316	NM_022454.3	202	Cac/Aac																																																																														
TCEB1	6921	MSKCC	GRCh37	8	74868154	74868154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	10	74	0	ENST00000284811.8:c.140G>T	p.Ser47Ile	p.S47I	ENST00000284811		47	aGt/aTt																																																																														
NBN	4683	MSKCC	GRCh37	8	90965495	90965495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	94	537	0	ENST00000265433.3:c.1822G>T	p.Val608Leu	p.V608L	ENST00000265433	NM_002485.4	608	Gta/Tta																																																																														
MYC	4609	MSKCC	GRCh37	8	128751253	128751253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	47	212	0	ENST00000377970.2:c.790A>C	p.Ser264Arg	p.S264R	ENST00000377970	NM_002467.4	264	Agc/Cgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340344	8340344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	59	500	0	ENST00000356435.5:c.5252G>T	p.Arg1751Ile	p.R1751I	ENST00000356435		1751	aGa/aTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8436679	8436679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	210	444	0	ENST00000356435.5:c.3999C>A	p.Ser1333Arg	p.S1333R	ENST00000356435		1333	agC/agA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528611	8528611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	92	734	0	ENST00000356435.5:c.521G>T	p.Arg174Leu	p.R174L	ENST00000356435		174	cGt/cTt																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015121	37015121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	118	699	0	ENST00000358127.4:c.283G>T	p.Val95Leu	p.V95L	ENST00000358127	NM_001280556.1	95	Gtg/Ttg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98215871	98215871	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143781513		P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	98	411	0	ENST00000331920.6:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000331920	NM_000264.3	1113	cGc/cAc																																																																														
ABL1	25	MSKCC	GRCh37	9	133759456	133759456	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	201	765	1	ENST00000318560.5:c.1779A>T	p.Lys593Asn	p.K593N	ENST00000318560	NM_005157.4	593	aaA/aaT																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815572	139815572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	72	775	0	ENST00000247668.2:c.1043C>G	p.Ser348Cys	p.S348C	ENST00000247668	NM_021138.3	348	tCc/tGc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317481	1317481	+	downstream_gene_variant	3'Flank	SNP	C	C	G			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	74	832	0				ENST00000381566																																																																																	
GATA1	2623	MSKCC	GRCh37	X	48650286	48650286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	235	637	1	ENST00000376670.3:c.256G>T	p.Gly86Trp	p.G86W	ENST00000376670	NM_002049.3	86	Ggg/Tgg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652543	48652543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	47	350	0	ENST00000376670.3:c.1214C>T	p.Thr405Ile	p.T405I	ENST00000376670	NM_002049.3	405	aCt/aTt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411818	63411818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	102	909	0	ENST00000330258.3:c.1349C>A	p.Pro450His	p.P450H	ENST00000330258	NM_152424.3	450	cCt/cAt																																																																														
AR	367	MSKCC	GRCh37	X	66765529	66765529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	113	643	1	ENST00000374690.3:c.541C>A	p.Leu181Ile	p.L181I	ENST00000374690	NM_000044.3	181	Ctt/Att																																																																														
MED12	9968	MSKCC	GRCh37	X	70344011	70344011	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	97	780	2	ENST00000374080.3:c.1747G>A	p.Asp583Asn	p.D583N	ENST00000374080		583	Gac/Aac																																																																														
MED12	9968	MSKCC	GRCh37	X	70346243	70346243	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	84	776	0	ENST00000374080.3:c.2594A>T	p.Tyr865Phe	p.Y865F	ENST00000374080		865	tAc/tTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70347811	70347811	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	273	791	0	ENST00000374080.3:c.3050G>T	p.Trp1017Leu	p.W1017L	ENST00000374080		1017	tGg/tTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70352041	70352041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	75	753	0	ENST00000374080.3:c.4238C>A	p.Thr1413Asn	p.T1413N	ENST00000374080		1413	aCc/aAc																																																																														
XIAP	331	MSKCC	GRCh37	X	123020041	123020041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	65	677	4	ENST00000355640.3:c.529G>T	p.Ala177Ser	p.A177S	ENST00000355640		177	Gct/Tct																																																																														
XIAP	331	MSKCC	GRCh37	X	123022475	123022475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	231	837	0	ENST00000355640.3:c.884G>T	p.Gly295Val	p.G295V	ENST00000355640		295	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0013782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	97	449	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	261	600	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	258	300	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	258	300	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	226	600	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	258	300	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
MYC	4609	MSKCC	GRCh37	8	128750518	128750518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	198	679	0	ENST00000377970.2:c.55A>G	p.Asn19Asp	p.N19D	ENST00000377970	NM_002467.4	19	Aac/Gac																																																																														
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013808-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			117	449	327	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258207	16258207	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013808-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			737	381	792	0	ENST00000375759.3:c.5474del	p.Lys1825ArgfsTer9	p.K1825Rfs*9	ENST00000375759	NM_015001.2	1824	tcA/tc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945173	44945173	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013808-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			106	348	351	0	ENST00000377967.4:c.3497G>A	p.Trp1166Ter	p.W1166*	ENST00000377967	NM_021140.2	1166	tGg/tAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	85	691	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	54	684	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	43	719	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	47	220	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	47	220	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	47	220	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604764	48604765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	96	862	2	ENST00000342988.3:c.1587dup	p.His530ThrfsTer47	p.H530Tfs*47	ENST00000342988	NM_005359.5	529	tta/ttAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357060	89357060	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	33	1089	0	ENST00000301030.4:c.574del	p.Ala192GlnfsTer36	p.A192Qfs*36	ENST00000301030	NM_001256183.1	192	Gca/ca																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983210	149983210	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	60	721	0	ENST00000253339.5:c.3048del	p.Ser1017ValfsTer3	p.S1017Vfs*3	ENST00000253339		1016	tcC/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	142	545	0	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	16	114	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	16	114	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	16	114	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	536	727	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	321	807	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	28	266	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	28	266	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	28	266	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729606	41729606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	337	977	2	ENST00000242208.4:c.923G>A	p.Arg308His	p.R308H	ENST00000242208	NM_002192.2	308	cGt/cAt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199373	16199373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	78	805	1	ENST00000375759.3:c.146C>T	p.Ala49Val	p.A49V	ENST00000375759	NM_015001.2	49	gCc/gTc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432182	121432182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	82	530	1	ENST00000257555.6:c.929C>A	p.Pro310His	p.P310H	ENST00000257555		310	cCt/cAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120311	94120311	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	234	913	0	ENST00000369303.4:c.740G>C	p.Arg247Thr	p.R247T	ENST00000369303	NM_004440.3	247	aGg/aCg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	189	509	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670358	134670358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	296	509	2	ENST00000398015.3:c.269G>A	p.Arg90His	p.R90H	ENST00000398015	NM_004441.4	90	cGc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11186829	11186829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	157	485	1	ENST00000361445.4:c.6376G>T	p.Val2126Phe	p.V2126F	ENST00000361445	NM_004958.3	2126	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	252	363	0	ENST00000269305.4:c.559+2T>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7990714	7990714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147784568		P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	442	661	1	ENST00000319144.4:c.47C>T	p.Ser16Leu	p.S16L	ENST00000319144	NM_001139.2	16	tCg/tTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023324	31023324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	511	457	0	ENST00000375687.4:c.2809C>T	p.Pro937Ser	p.P937S	ENST00000375687	NM_015338.5	937	Cct/Tct																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467875	66467875	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	173	588	0	ENST00000273854.3:c.394T>G	p.Phe132Val	p.F132V	ENST00000273854	NM_004439.5	132	Ttt/Gtt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971203	21971209	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	ATGACCT	ATGACCT	-			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	56	142	0	ENST00000304494.5:c.151-2_155delAGGTCAT		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971203	21971209	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	ATGACCT	ATGACCT	-			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	56	142	0	ENST00000304494.5:c.151-2_155delAGGTCAT		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971203	21971209	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	ATGACCT	ATGACCT	-			P-0014021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	56	142	0	ENST00000304494.5:c.151-2_155delAGGTCAT		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	41	283	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	129	627	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444514	49444514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	93	371	0	ENST00000301067.7:c.2857C>T	p.Pro953Ser	p.P953S	ENST00000301067	NM_003482.3	953	Cct/Tct																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123298174	123298174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	93	567	1	ENST00000358487.5:c.680G>A	p.Gly227Glu	p.G227E	ENST00000358487	NM_000141.4	227	gGa/gAa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9547004	9547004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	50	233	0	ENST00000353224.5:c.1018C>T	p.Leu340Phe	p.L340F	ENST00000353224	NM_177990.2	340	Ctc/Ttc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499706	8499706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	107	533	0	ENST00000356435.5:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000356435		755	Gaa/Aaa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729162	66729162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	131	616	0	ENST00000307102.5:c.370C>T	p.Pro124Ser	p.P124S	ENST00000307102	NM_002755.3	124	Ccg/Tcg																																																																														
PARK2	5071	MSKCC	GRCh37	6	162394367	162394367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144032774		P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	126	659	0	ENST00000366898.1:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000366898	NM_004562.2	234	cGg/cAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317148	11317148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	139	696	0	ENST00000361445.4:c.346C>T	p.Pro116Ser	p.P116S	ENST00000361445	NM_004958.3	116	Ccc/Tcc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649538	206649538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	127	332	2	ENST00000367120.3:c.373C>T	p.His125Tyr	p.H125Y	ENST00000367120	NM_014002.3	125	Cac/Tac																																																																														
RET	5979	MSKCC	GRCh37	10	43604659	43604659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	79	465	0	ENST00000355710.3:c.1244G>A	p.Arg415Lys	p.R415K	ENST00000355710	NM_020975.4	415	aGg/aAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118371862	118371862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	87	454	1	ENST00000534358.1:c.6319G>A	p.Glu2107Lys	p.E2107K	ENST00000534358	NM_005933.3	2107	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377246	118377246	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	142	645	0	ENST00000534358.1:c.10639C>T	p.Gln3547Ter	p.Q3547*	ENST00000534358	NM_005933.3	3547	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	48916840	48916840	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	92	331	0	ENST00000267163.4:c.370A>T	p.Ile124Leu	p.I124L	ENST00000267163	NM_000321.2	124	Ata/Tta																																																																														
MGA	23269	MSKCC	GRCh37	15	42034932	42034932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	225	895	0	ENST00000219905.7:c.4774C>T	p.Pro1592Ser	p.P1592S	ENST00000219905	NM_001164273.1	1592	Cct/Tct																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349267	89349267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	277	1325	0	ENST00000301030.4:c.3683C>A	p.Ser1228Tyr	p.S1228Y	ENST00000301030	NM_001256183.1	1228	tCc/tAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676303	37676303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	149	700	1	ENST00000447079.4:c.3058C>T	p.Leu1020Phe	p.L1020F	ENST00000447079	NM_015083.1	1020	Ctt/Ttt																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40458440	40458440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	124	571	0	ENST00000345506.4:c.1655C>T	p.Ser552Phe	p.S552F	ENST00000345506	NM_003152.3	552	tCc/tTc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1623954	1623954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	116	892	3	ENST00000344749.5:c.545C>T	p.Ser182Phe	p.S182F	ENST00000344749	NM_001136139.2	182	tCc/tTc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158594128	158594128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	200	826	1	ENST00000263640.3:c.1445C>T	p.Pro482Leu	p.P482L	ENST00000263640	NM_001105.4	482	cCa/cTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385215	41385215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	79	601	0	ENST00000373198.4:c.746C>T	p.Ser249Leu	p.S249L	ENST00000373198	NM_133170.3	249	tCa/tTa																																																																														
ERG	2078	MSKCC	GRCh37	21	39755685	39755685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	86	621	0	ENST00000288319.7:c.1080G>A	p.Met360Ile	p.M360I	ENST00000288319	NM_182918.3	360	atG/atA																																																																														
KDR	3791	MSKCC	GRCh37	4	55960978	55960978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	76	388	0	ENST00000263923.4:c.2962G>A	p.Glu988Lys	p.E988K	ENST00000263923	NM_002253.2	988	Gaa/Aaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176687067	176687067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	131	608	0	ENST00000439151.2:c.5044C>T	p.Leu1682Phe	p.L1682F	ENST00000439151	NM_022455.4	1682	Ctt/Ttt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725524	117725524	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	125	530	1	ENST00000368508.3:c.357G>A	p.Trp119Ter	p.W119*	ENST00000368508	NM_002944.2	119	tgG/tgA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845547	151845547	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	105	557	0	ENST00000262189.6:c.13465A>G	p.Ile4489Val	p.I4489V	ENST00000262189	NM_170606.2	4489	Att/Gtt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	245	396	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	289	418	1				ENST00000310581	NM_198253.2																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212812335	212812335	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	120	330	1	ENST00000342788.4:c.241C>T	p.Arg81Ter	p.R81*	ENST00000342788	NM_005235.2	81	Cga/Tga																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59924472	59924472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	404	637	1	ENST00000259008.2:c.617C>T	p.Ser206Leu	p.S206L	ENST00000259008	NM_032043.2	206	tCg/tTg																																																																														
INHA	3623	MSKCC	GRCh37	2	220440145	220440145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	659	1026	0	ENST00000243786.2:c.998G>A	p.Gly333Glu	p.G333E	ENST00000243786	NM_002191.3	333	gGg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720851	89720852	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	133	196	0	ENST00000371953.3:c.1002_1003delCCinsTT	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	334	aaCCga/aaTTga																																																																														
YAP1	10413	MSKCC	GRCh37	11	102100580	102100580	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	155	486	0	ENST00000282441.5:c.1424A>T	p.Gln475Leu	p.Q475L	ENST00000282441	NM_001130145.2	475	cAg/cTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42054479	42054479	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	533	859	1	ENST00000219905.7:c.7663T>C	p.Ser2555Pro	p.S2555P	ENST00000219905	NM_001164273.1	2555	Tct/Cct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858319	9858319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	112	388	0	ENST00000330684.3:c.3082C>A	p.Gln1028Lys	p.Q1028K	ENST00000330684	NM_001134407.1	1028	Cag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100057	11100057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	526	653	1	ENST00000344626.4:c.1183G>A	p.Asp395Asn	p.D395N	ENST00000344626	NM_003072.3	395	Gat/Aat																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856063	45856063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	415	505	0	ENST00000391945.4:c.1843G>A	p.Gly615Arg	p.G615R	ENST00000391945	NM_000400.3	615	Ggg/Agg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909451	50909451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	661	991	0	ENST00000440232.2:c.1255C>T	p.Pro419Ser	p.P419S	ENST00000440232	NM_002691.3	419	Cct/Tct																																																																														
PAK7	57144	MSKCC	GRCh37	20	9543656	9543656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	340	481	0	ENST00000353224.5:c.1498G>A	p.Asp500Asn	p.D500N	ENST00000353224	NM_177990.2	500	Gat/Aat																																																																														
ERG	2078	MSKCC	GRCh37	21	39755755	39755755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	228	304	0	ENST00000288319.7:c.1010G>A	p.Gly337Glu	p.G337E	ENST00000288319	NM_182918.3	337	gGg/gAg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138382857	138382857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	337	452	0	ENST00000289153.2:c.2687G>A	p.Arg896Gln	p.R896Q	ENST00000289153	NM_006219.2	896	cGa/cAa																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197121	26197121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	1838	1597	0	ENST00000356476.2:c.358A>T	p.Ile120Phe	p.I120F	ENST00000356476		120	Atc/Ttc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508506	106508506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	84	122	0	ENST00000359195.3:c.500A>G	p.Asn167Ser	p.N167S	ENST00000359195	NM_002649.2	167	aAc/aGc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742552	145742552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	632	375	1	ENST00000428558.2:c.236G>T	p.Gly79Val	p.G79V	ENST00000428558	NM_004260.3	79	gGg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	266	256	0	ENST00000304494.5:c.204_205delGGinsAT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcATag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	266	256	0	ENST00000304494.5:c.204_205delGGinsAT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcATag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0014159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	266	256	0	ENST00000304494.5:c.204_205delGGinsAT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcATag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	348	396	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	282	367	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	110	196	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	110	196	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	110	196	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246382	41246382	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	100	650	0	ENST00000357654.3:c.1166G>C	p.Ser389Thr	p.S389T	ENST00000357654	NM_007294.3	389	aGt/aCt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153259089	153259089	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	58	374	0	ENST00000281708.4:c.727-1G>A		p.X243_splice	ENST00000281708	NM_033632.3	243																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56179357	56179357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	123	338	0	ENST00000399503.3:c.3670C>G	p.Pro1224Ala	p.P1224A	ENST00000399503	NM_005921.1	1224	Cca/Gca																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411734	63411734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	278	455	0	ENST00000330258.3:c.1433G>T	p.Gly478Val	p.G478V	ENST00000330258	NM_152424.3	478	gGa/gTa																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	274	440	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	477	805	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	436	730	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916193	9916193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	322	620	0	ENST00000330684.3:c.2096C>T	p.Pro699Leu	p.P699L	ENST00000330684	NM_001134407.1	699	cCc/cTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10267111	10267111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	445	629	0	ENST00000340748.4:c.1307C>T	p.Ser436Phe	p.S436F	ENST00000340748		436	tCt/tTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623625	28623625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	845	519	0	ENST00000241453.7:c.932G>A	p.Arg311Gln	p.R311Q	ENST00000241453	NM_004119.2	311	cGg/cAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11316127	11316151	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTCCCTCACGGATGGCCTGTTTG	AGCTCCCTCACGGATGGCCTGTTTG	-			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	342	684	0	ENST00000361445.4:c.603_627del	p.Lys202Ter	p.K202*	ENST00000361445	NM_004958.3	201	ccCAAACAGGCCATCCGTGAGGGAGCT/cc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260726	16260726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	349	599	2	ENST00000375759.3:c.7991C>T	p.Pro2664Leu	p.P2664L	ENST00000375759	NM_015001.2	2664	cCg/cTg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939474	36939474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	557	940	0	ENST00000361632.4:c.376C>T	p.Pro126Ser	p.P126S	ENST00000361632		126	Ccc/Tcc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279680	123279680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	323	308	0	ENST00000358487.5:c.752G>A	p.Arg251Gln	p.R251Q	ENST00000358487	NM_000141.4	251	cGa/cAa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251243	99251243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	793	708	0	ENST00000268035.6:c.547C>T	p.Pro183Ser	p.P183S	ENST00000268035	NM_000875.3	183	Cca/Tca																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467150	99467150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	267	454	1	ENST00000268035.6:c.2531C>T	p.Pro844Leu	p.P844L	ENST00000268035	NM_000875.3	844	cCt/cTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781459	3781459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	193	443	1	ENST00000262367.5:c.4906C>T	p.His1636Tyr	p.H1636Y	ENST00000262367	NM_004380.2	1636	Cac/Tac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89833560	89833561	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	467	514	0	ENST00000389301.3:c.2589_2590delinsTT	p.Leu864Phe	p.L864F	ENST00000389301	NM_000135.2	863	ggCCtt/ggTTtt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622332	1622332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	720	1193	0	ENST00000344749.5:c.632C>T	p.Pro211Leu	p.P211L	ENST00000344749	NM_001136139.2	211	cCc/cTc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379682	17379683	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	374	755	0	ENST00000359435.4:c.67_68delinsTT	p.Pro23Phe	p.P23F	ENST00000359435	NM_001033549.1	23	CCt/TTt																																																																														
CIC	23152	MSKCC	GRCh37	19	42797756	42797756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	576	1038	0	ENST00000575354.2:c.3808C>T	p.Pro1270Ser	p.P1270S	ENST00000575354	NM_015125.3	1270	Ccc/Tcc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028189	48028189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	265	405	0	ENST00000234420.5:c.3067G>A	p.Glu1023Lys	p.E1023K	ENST00000234420	NM_000179.2	1023	Gaa/Aaa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99204001	99204001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	235	409	0	ENST00000074304.5:c.2864C>T	p.Ser955Phe	p.S955F	ENST00000074304	NM_001134224.1	955	tCc/tTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546670	9546670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	192	360	0	ENST00000353224.5:c.1352A>G	p.Asn451Ser	p.N451S	ENST00000353224	NM_177990.2	451	aAc/aGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419978	41419978	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	302	647	0	ENST00000373198.4:c.343T>G	p.Ser115Ala	p.S115A	ENST00000373198	NM_133170.3	115	Tcc/Gcc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55130049	55130049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	418	783	1	ENST00000257290.5:c.583G>A	p.Gly195Arg	p.G195R	ENST00000257290	NM_006206.4	195	Gga/Aga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871196	35871196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	186	344	1	ENST00000303115.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000303115	NM_002185.3	140	Cgg/Tgg																																																																														
STK19	8859	MSKCC	GRCh37	6	31940160	31940160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1697	662	1126	1	ENST00000375331.2:c.302C>T	p.Pro101Leu	p.P101L	ENST00000375331	NM_004197.1	101	cCc/cTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979393	2979393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	361	553	0	ENST00000396946.4:c.854C>T	p.Ser285Phe	p.S285F	ENST00000396946	NM_032415.4	285	tCc/tTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739609	41739609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	343	626	1	ENST00000242208.4:c.364G>A	p.Glu122Lys	p.E122K	ENST00000242208	NM_002192.2	122	Gag/Aag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317520	1317520	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	469	972	0				ENST00000381566																																																																																	
KMT2B	9757	MSKCC	GRCh37	19	36211270	36211270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1442	1051	1806	0	ENST00000222270.7:c.1021C>T	p.Gln341Ter	p.Q341*	ENST00000222270	NM_014727.1	341	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1328	116	623	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	73	525	0				ENST00000310581	NM_198253.2																																																																																
AXL	558	MSKCC	GRCh37	19	41743897	41743897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1828	148	923	2	ENST00000301178.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000301178	NM_021913.4	278	Ccc/Tcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562746	29562746	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	77	355	0	ENST00000358273.4:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000358273	NM_001042492.2	1276	Cga/Tga																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518755	204518755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	36	222	0	ENST00000367182.3:c.1418C>T	p.Ser473Leu	p.S473L	ENST00000367182	NM_001278516.1	473	tCa/tTa																																																																														
SUFU	51684	MSKCC	GRCh37	10	104375132	104375132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1398	77	590	1	ENST00000369902.3:c.1130C>T	p.Ser377Phe	p.S377F	ENST00000369902	NM_016169.3	377	tCc/tTc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1509	109	663	0	ENST00000345506.4:c.1096C>T	p.Pro366Ser	p.P366S	ENST00000345506	NM_003152.3	366	Ccc/Tcc																																																																														
HGF	3082	MSKCC	GRCh37	7	81381520	81381520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	50	315	1	ENST00000222390.5:c.541C>T	p.Arg181Ter	p.R181*	ENST00000222390	NM_000601.4	181	Cga/Tga																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9778780	9778780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	81	411	0	ENST00000377346.4:c.1049G>A	p.Gly350Asp	p.G350D	ENST00000377346	NM_005026.3	350	gGc/gAc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163315501	163315501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	56	416	0	ENST00000271452.3:c.841G>A	p.Asp281Asn	p.D281N	ENST00000271452	NM_145697.2	281	Gac/Aac																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94204779	94204779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	41	366	2	ENST00000323929.3:c.806C>T	p.Ser269Leu	p.S269L	ENST00000323929	NM_005591.3	269	tCa/tTa																																																																														
CBL	867	MSKCC	GRCh37	11	119155953	119155953	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1510	125	638	0	ENST00000264033.4:c.1618C>T	p.Arg540Ter	p.R540*	ENST00000264033	NM_005188.3	540	Cga/Tga																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926882	112926882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1281	108	541	0	ENST00000351677.2:c.1502G>A	p.Arg501Lys	p.R501K	ENST00000351677	NM_002834.3	501	aGg/aAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965173	81965173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1321	84	564	1	ENST00000359376.3:c.2653C>T	p.Pro885Ser	p.P885S	ENST00000359376	NM_002661.3	885	Ccg/Tcg																																																																														
NF1	4763	MSKCC	GRCh37	17	29661976	29661976	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	63	450	0	ENST00000358273.4:c.5933T>G	p.Leu1978Arg	p.L1978R	ENST00000358273	NM_001042492.2	1978	cTg/cGg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732314	74732314	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	63	296	0	ENST00000359995.5:c.595G>T	p.Glu199Ter	p.E199*	ENST00000359995	NM_001195427.1	199	Gaa/Taa																																																																														
INSR	3643	MSKCC	GRCh37	19	7120662	7120662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1660	118	722	0	ENST00000302850.5:c.3628G>A	p.Asp1210Asn	p.D1210N	ENST00000302850	NM_000208.2	1210	Gat/Aat																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375340	15375340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1226	102	484	0	ENST00000263377.2:c.1087G>A	p.Glu363Lys	p.E363K	ENST00000263377	NM_058243.2	363	Gag/Aag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18277956	18277956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	93	524	0	ENST00000222254.8:c.1576G>A	p.Glu526Lys	p.E526K	ENST00000222254	NM_005027.3	526	Gag/Aag																																																																														
CD79A	973	MSKCC	GRCh37	19	42383644	42383644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	81	580	0	ENST00000221972.3:c.419C>T	p.Thr140Ile	p.T140I	ENST00000221972	NM_021601.3	140	aCc/aTc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966381	25966381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1630	124	693	0	ENST00000435504.4:c.2825C>T	p.Pro942Leu	p.P942L	ENST00000435504		942	cCa/cTa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213365	39213365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1614	146	678	1	ENST00000402219.2:c.3602G>A	p.Arg1201Gln	p.R1201Q	ENST00000402219	NM_005633.3	1201	cGg/cAg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866409	42866409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1662	121	821	0	ENST00000398585.3:c.223G>A	p.Glu75Lys	p.E75K	ENST00000398585	NM_001135099.1	75	Gag/Aag																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167723	185167723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	74	491	0	ENST00000265026.3:c.1046G>A	p.Gly349Glu	p.G349E	ENST00000265026	NM_004721.4	349	gGa/gAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157165	106157165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	87	390	0	ENST00000380013.4:c.2066C>T	p.Ser689Phe	p.S689F	ENST00000380013	NM_001127208.2	689	tCc/tTc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33290672	33290672	+	5_prime_UTR_variant	5'UTR	SNP	C	C	G	rs202133870		P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1540	117	570	0	ENST00000374542.5:c.-86G>C		p.*29*	ENST00000374542	NM_001141970.1																																																																																
ROS1	6098	MSKCC	GRCh37	6	117737444	117737444	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	66	380	0	ENST00000368508.3:c.205C>T	p.Gln69Ter	p.Q69*	ENST00000368508	NM_002944.2	69	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859804	151859804	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	50	241	0	ENST00000262189.6:c.10858A>T	p.Lys3620Ter	p.K3620*	ENST00000262189	NM_170606.2	3620	Aag/Tag																																																																														
SYK	6850	MSKCC	GRCh37	9	93641056	93641056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	48	357	0	ENST00000375746.1:c.1402G>A	p.Asp468Asn	p.D468N	ENST00000375746	NM_001174167.1	468	Gat/Aat																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197800	123197800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	48	227	1	ENST00000218089.9:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000218089	NM_001042749.1	642	Gaa/Aaa																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94204760	94204761	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0014392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	26	322	0	ENST00000323929.3:c.824_825delCCinsTT	p.Ser275Phe	p.S275F	ENST00000323929	NM_005591.3	275	tCC/tTT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	50	215	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	652	477	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	322	288	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	322	288	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	38	315	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554840	187554840	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	443	259	0	ENST00000441802.2:c.4321C>T	p.Gln1441Ter	p.Q1441*	ENST00000441802	NM_005245.3	1441	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	287	569	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433896	49433896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	139	690	1	ENST00000301067.7:c.7657C>T	p.Gln2553Ter	p.Q2553*	ENST00000301067	NM_003482.3	2553	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057874	27057874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	175	623	0	ENST00000324856.7:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000324856	NM_006015.4	528	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	322	288	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433827	49433827	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	126	781	0	ENST00000301067.7:c.7726C>G	p.Gln2576Glu	p.Q2576E	ENST00000301067	NM_003482.3	2576	Caa/Gaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446052	49446052	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	165	986	0	ENST00000301067.7:c.1414G>T	p.Glu472Ter	p.E472*	ENST00000301067	NM_003482.3	472	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448143	49448144	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	96	431	1	ENST00000301067.7:c.456_457delinsAA	p.Glu153Lys	p.E153K	ENST00000301067	NM_003482.3	152	caGGag/caAAag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448455	49448455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	105	522	1	ENST00000301067.7:c.256G>A	p.Glu86Lys	p.E86K	ENST00000301067	NM_003482.3	86	Gag/Aag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86669981	86669981	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	50	243	0	ENST00000274376.6:c.1778T>C	p.Val593Ala	p.V593A	ENST00000274376	NM_002890.2	593	gTc/gCc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68999979	68999979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	102	458	0	ENST00000288368.4:c.2048C>T	p.Ser683Leu	p.S683L	ENST00000288368	NM_024870.2	683	tCa/tTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123210293	123210294	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	248	181	0	ENST00000218089.9:c.2646dup	p.Ala883CysfsTer12	p.A883Cfs*12	ENST00000218089	NM_001042749.1	882	gct/gcTt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111461	8111462	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	364	465	0	ENST00000346208.3:c.947_948delinsAT	p.Ser316Tyr	p.S316Y	ENST00000346208		316	tCC/tAT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717687	89717687	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	295	428	0	ENST00000371953.3:c.713delT	p.Phe238SerfsTer18	p.F238Sfs*18	ENST00000371953	NM_000314.4	238	Ttc/tc																																																																														
WT1	7490	MSKCC	GRCh37	11	32417917	32417917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	458	509	0	ENST00000332351.3:c.1135G>T	p.Val379Leu	p.V379L	ENST00000332351	NM_024426.4	379	Gta/Tta																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827327	72827327	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	578	603	0	ENST00000268489.5:c.9254A>C	p.Lys3085Thr	p.K3085T	ENST00000268489	NM_006885.3	3085	aAa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	533	489	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
CARM1	10498	MSKCC	GRCh37	19	10982593	10982593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	129	154	0	ENST00000327064.4:c.215A>G	p.Tyr72Cys	p.Y72C	ENST00000327064	NM_199141.1	72	tAc/tGc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276654	15276654	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	620	609	0	ENST00000263388.2:c.5611T>C	p.Ser1871Pro	p.S1871P	ENST00000263388	NM_000435.2	1871	Tca/Cca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288874	15288874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	314	322	0	ENST00000263388.2:c.3865G>T	p.Val1289Leu	p.V1289L	ENST00000263388	NM_000435.2	1289	Gtg/Ttg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942536	17942536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	570	581	0	ENST00000458235.1:c.2752C>A	p.Arg918Ser	p.R918S	ENST00000458235	NM_000215.3	918	Cgc/Agc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965748	25965748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1790	673	605	2	ENST00000435504.4:c.3458G>A	p.Ser1153Asn	p.S1153N	ENST00000435504		1153	aGc/aAc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	215	283	0	ENST00000397062.3:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000397062	NM_006164.4	29	Gat/Tat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259428	89259428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	693	454	1	ENST00000336596.2:c.572C>T	p.Ala191Val	p.A191V	ENST00000336596	NM_005233.5	191	gCc/gTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259462	89259463	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	610	437	0	ENST00000336596.2:c.606_607delinsAA	p.Cys202_Pro203delinsTer	p.C202_P203delins*	ENST00000336596	NM_005233.5	202	tgCCca/tgAAca																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189389	56189389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	450	464	0	ENST00000399503.3:c.4421C>T	p.Pro1474Leu	p.P1474L	ENST00000399503	NM_005921.1	1474	cCt/cTt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505107	149505107	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1656	578	602	0	ENST00000261799.4:c.1708G>T	p.Glu570Ter	p.E570*	ENST00000261799	NM_002609.3	570	Gag/Tag																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798510	32798510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	608	571	0	ENST00000374899.4:c.1346G>T	p.Arg449Leu	p.R449L	ENST00000374899	NM_018833.2	449	cGa/cTa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068124	94068124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	242	259	0	ENST00000369303.4:c.838G>T	p.Gly280Cys	p.G280C	ENST00000369303	NM_004440.3	280	Ggc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453088	140453088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	645	388	0	ENST00000288602.6:c.1847C>A	p.Ser616Tyr	p.S616Y	ENST00000288602	NM_004333.4	616	tCc/tAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970988	21970988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	1161	539	0	ENST00000304494.5:c.370C>G	p.Arg124Gly	p.R124G	ENST00000304494	NM_000077.4	124	Cgc/Ggc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970988	21970988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	1161	539	0	ENST00000304494.5:c.370C>G	p.Arg124Gly	p.R124G	ENST00000304494	NM_000077.4	124	Cgc/Ggc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	750	440	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	750	440	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971199	21971199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	786	445	0	ENST00000304494.5:c.159G>A	p.Met53Ile	p.M53I	ENST00000304494	NM_000077.4	53	atG/atA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971199	21971199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	786	445	0	ENST00000304494.5:c.159G>A	p.Met53Ile	p.M53I	ENST00000304494	NM_000077.4	53	atG/atA																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045189	47045189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	487	474	0	ENST00000329236.7:c.2196G>T	p.Glu732Asp	p.E732D	ENST00000329236	NM_001204466.1	732	gaG/gaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0014671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	58	428	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0014671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	105	815	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	43	331	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152009026	152009026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	55	307	0	ENST00000262189.6:c.596del	p.Arg199HisfsTer7	p.R199Hfs*7	ENST00000262189	NM_170606.2	199	cGa/ca																																																																														
CASP8	841	MSKCC	GRCh37	2	202149593	202149593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	54	443	0	ENST00000358485.4:c.1034A>G	p.Asp345Gly	p.D345G	ENST00000358485	NM_001080125.1	345	gAc/gGc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712899	43712899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	83	633	1	ENST00000382044.4:c.4285G>T	p.Asp1429Tyr	p.D1429Y	ENST00000382044	NM_001141980.1	1429	Gac/Tac																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217607	7217607	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0014671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	62	377	0	ENST00000380728.2:c.317+3G>A		p.X106_splice	ENST00000380728		106																																																																															
GNA11	2767	MSKCC	GRCh37	19	3121057	3121071	+	inframe_deletion	In_Frame_Del	DEL	CGACAAGATCATCTA	CGACAAGATCATCTA	-			P-0014671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	91	815	0	ENST00000078429.4:c.961_975del	p.Asp321_Tyr325del	p.D321_Y325del	ENST00000078429	NM_002067.2	320	agCGACAAGATCATCTAc/agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	803	601	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	328	595	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa																																																																														
NF1	4763	MSKCC	GRCh37	17	29683977	29683977	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	378	490	0	ENST00000358273.4:c.7739-1G>A		p.X2580_splice	ENST00000358273	NM_001042492.2	2580																																																																															
ROS1	6098	MSKCC	GRCh37	6	117642470	117642470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	322	538	0	ENST00000368508.3:c.5729G>A	p.Arg1910Gln	p.R1910Q	ENST00000368508	NM_002944.2	1910	cGa/cAa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123324013	123324013	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	312	492	0	ENST00000358487.5:c.454+3A>G		p.X152_splice	ENST00000358487	NM_000141.4	152																																																																															
RB1	5925	MSKCC	GRCh37	13	48936978	48936978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	859	468	0	ENST00000267163.4:c.746C>T	p.Ser249Leu	p.S249L	ENST00000267163	NM_000321.2	249	tCa/tTa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	595	675	0	ENST00000269571.5:c.829G>A	p.Asp277Asn	p.D277N	ENST00000269571		277	Gac/Aac																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622378	1622378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	364	708	1	ENST00000344749.5:c.586G>T	p.Asp196Tyr	p.D196Y	ENST00000344749	NM_001136139.2	196	Gat/Tat																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645036	86645036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	133	270	0	ENST00000274376.6:c.1108C>T	p.Gln370Ter	p.Q370*	ENST00000274376	NM_002890.2	370	Caa/Taa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172076	32172076	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	349	662	0	ENST00000375023.3:c.2956A>C	p.Lys986Gln	p.K986Q	ENST00000375023	NM_004557.3	986	Aaa/Caa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117650519	117650519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	273	573	1	ENST00000368508.3:c.5339G>A	p.Arg1780Lys	p.R1780K	ENST00000368508	NM_002944.2	1780	aGa/aAa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390600	139390600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	483	832	1	ENST00000277541.6:c.7591G>A	p.Asp2531Asn	p.D2531N	ENST00000277541	NM_017617.3	2531	Gac/Aac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030650	47030650	+	intron_variant	Intron	SNP	A	A	T			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	295	678	0	ENST00000329236.7:c.201+1753A>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
ARAF	369	MSKCC	GRCh37	X	47426390	47426390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	305	547	1	ENST00000377045.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000377045	NM_001654.4	245	Ggt/Agt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	66	570	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	152	816	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70333555	70333555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150689919		P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	193	566	1	ENST00000373644.4:c.1460C>T	p.Ser487Leu	p.S487L	ENST00000373644	NM_030625.2	487	tCa/tTa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495394	149495394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	99	852	0	ENST00000261799.4:c.3253G>A	p.Glu1085Lys	p.E1085K	ENST00000261799	NM_002609.3	1085	Gag/Aag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609861	117609861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	126	726	0	ENST00000368508.3:c.6838G>A	p.Glu2280Lys	p.E2280K	ENST00000368508	NM_002944.2	2280	Gaa/Aaa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120506379	120506379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	278	596	0	ENST00000256646.2:c.1733C>T	p.Pro578Leu	p.P578L	ENST00000256646	NM_024408.3	578	cCt/cTt																																																																														
RET	5979	MSKCC	GRCh37	10	43597840	43597840	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	96	1009	0	ENST00000355710.3:c.388A>C	p.Thr130Pro	p.T130P	ENST00000355710	NM_020975.4	130	Aca/Cca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426330	49426330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	274	1150	0	ENST00000301067.7:c.12158C>T	p.Thr4053Ile	p.T4053I	ENST00000301067	NM_003482.3	4053	aCt/aTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133201326	133201326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	90	838	0	ENST00000320574.5:c.6818C>T	p.Thr2273Ile	p.T2273I	ENST00000320574	NM_006231.2	2273	aCc/aTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28919608	28919608	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	145	792	0	ENST00000282397.4:c.2329delA	p.Thr777ProfsTer7	p.T777Pfs*7	ENST00000282397	NM_002019.4	777	Acc/cc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914800	32914800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	196	545	1	ENST00000380152.3:c.6308C>T	p.Ser2103Leu	p.S2103L	ENST00000380152		2103	tCa/tTa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36989255	36989255	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	74	692	3	ENST00000354822.5:c.77+3G>A		p.X26_splice	ENST00000354822	NM_001079668.2	26																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609780	81609780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	73	360	1	ENST00000298171.2:c.1378G>A	p.Asp460Asn	p.D460N	ENST00000298171	NM_000369.2	460	Gat/Aat																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67358500	67358500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	52	259	0	ENST00000327367.4:c.8C>T	p.Ser3Phe	p.S3F	ENST00000327367	NM_005902.3	3	tCc/tTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476309	88476309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	148	817	2	ENST00000360948.2:c.1823G>A	p.Gly608Asp	p.G608D	ENST00000360948	NM_001012338.2	608	gGc/gAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679272	88679272	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	132	585	0	ENST00000360948.2:c.766-1G>A		p.X256_splice	ENST00000360948	NM_001012338.2	256																																																																															
CYLD	1540	MSKCC	GRCh37	16	50783806	50783806	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	185	731	0	ENST00000398568.2:c.197A>T	p.Lys66Met	p.K66M	ENST00000398568	NM_001042412.1	66	aAg/aTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829181	72829181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	84	714	1	ENST00000268489.5:c.7400C>T	p.Pro2467Leu	p.P2467L	ENST00000268489	NM_006885.3	2467	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991678	72991679	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	52	342	2	ENST00000268489.5:c.2366_2367delCCinsTT	p.Ser789Phe	p.S789F	ENST00000268489	NM_006885.3	789	tCC/tTT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357102	89357102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	102	733	0	ENST00000301030.4:c.532C>T	p.Arg178Cys	p.R178C	ENST00000301030	NM_001256183.1	178	Cgc/Tgc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836660	89836660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	246	983	0	ENST00000389301.3:c.2230C>T	p.Pro744Ser	p.P744S	ENST00000389301	NM_000135.2	744	Ccc/Tcc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604760	48604760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	185	570	0	ENST00000342988.3:c.1582C>T	p.His528Tyr	p.H528Y	ENST00000342988	NM_005359.5	528	Cac/Tac																																																																														
INSR	3643	MSKCC	GRCh37	19	7166225	7166225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	154	737	0	ENST00000302850.5:c.1801G>A	p.Asp601Asn	p.D601N	ENST00000302850	NM_000208.2	601	Gat/Aat																																																																														
AXL	558	MSKCC	GRCh37	19	41744494	41744494	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	112	918	0	ENST00000301178.4:c.1114C>T	p.Gln372Ter	p.Q372*	ENST00000301178	NM_021913.4	372	Caa/Taa																																																																														
ALK	238	MSKCC	GRCh37	2	29449788	29449788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	220	1181	2	ENST00000389048.3:c.3067G>A	p.Val1023Met	p.V1023M	ENST00000389048	NM_004304.4	1023	Gtg/Atg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560824	9560824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	65	559	2	ENST00000353224.5:c.958C>T	p.Arg320Cys	p.R320C	ENST00000353224	NM_177990.2	320	Cgc/Tgc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22123602	22123602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	173	528	0	ENST00000215832.6:c.974C>T	p.Ala325Val	p.A325V	ENST00000215832	NM_002745.4	325	gCc/gTc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12633256	12633256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	238	705	0	ENST00000251849.4:c.1144C>T	p.Pro382Ser	p.P382S	ENST00000251849	NM_002880.3	382	Cca/Tca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52692222	52692222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	169	432	0	ENST00000394830.3:c.638C>T	p.Ser213Phe	p.S213F	ENST00000394830	NM_018313.4	213	tCt/tTt																																																																														
BCL6	604	MSKCC	GRCh37	3	187446947	187446947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	148	785	1	ENST00000232014.4:c.1246C>T	p.Pro416Ser	p.P416S	ENST00000232014	NM_001130845.1	416	Cca/Tca																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149510181	149510181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	155	742	2	ENST00000261799.4:c.1288G>A	p.Gly430Arg	p.G430R	ENST00000261799	NM_002609.3	430	Ggg/Agg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803044	32803044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	240	807	0	ENST00000374899.4:c.832G>A	p.Val278Met	p.V278M	ENST00000374899	NM_018833.2	278	Gtg/Atg																																																																														
MET	4233	MSKCC	GRCh37	7	116403208	116403208	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	286	672	0	ENST00000397752.3:c.2469A>C	p.Leu823Phe	p.L823F	ENST00000397752	NM_000245.2	823	ttA/ttC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874131	151874131	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	161	420	0	ENST00000262189.6:c.8407A>T	p.Thr2803Ser	p.T2803S	ENST00000262189	NM_170606.2	2803	Act/Tct																																																																														
NBN	4683	MSKCC	GRCh37	8	90970983	90970983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	140	402	0	ENST00000265433.3:c.1094C>T	p.Ala365Val	p.A365V	ENST00000265433	NM_002485.4	365	gCt/gTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486104	8486104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	83	581	0	ENST00000356435.5:c.2713G>A	p.Glu905Lys	p.E905K	ENST00000356435		905	Gag/Aag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87475970	87475970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	266	1089	0	ENST00000277120.3:c.1412G>A	p.Gly471Glu	p.G471E	ENST00000277120		471	gGa/gAa																																																																														
RXRA	6256	MSKCC	GRCh37	9	137325995	137325995	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	147	1051	2	ENST00000481739.1:c.1183A>G	p.Lys395Glu	p.K395E	ENST00000481739	NM_002957.4	395	Aag/Gag																																																																														
AR	367	MSKCC	GRCh37	X	66765332	66765333	+	missense_variant	Missense_Mutation	DNP	AA	AA	TC			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	69	524	0	ENST00000374690.3:c.344_345delAAinsTC	p.Gln115Leu	p.Q115L	ENST00000374690	NM_000044.3	115	cAA/cTC																																																																														
AR	367	MSKCC	GRCh37	X	66765332	66765332	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	69	524	0	ENST00000374690.3:c.344A>T	p.Gln115Leu	p.Q115L	ENST00000374690	NM_000044.3	115	cAa/cTa																																																																														
AR	367	MSKCC	GRCh37	X	66765333	66765333	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	69	519	0	ENST00000374690.3:c.345A>C	p.Gln115His	p.Q115H	ENST00000374690	NM_000044.3	115	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	1126	1007	2	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5240314	5240314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	1027	1060	2	ENST00000357368.4:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000357368	NM_002850.3	534	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	496	655	1				ENST00000310581	NM_198253.2																																																																																
CRLF2	64109	MSKCC	GRCh37	X	1317422	1317422	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	661	789	0				ENST00000381566																																																																																	
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	544	757	0	ENST00000288602.6:c.1798_1799delGTinsAG	p.Val600Arg	p.V600R	ENST00000288602	NM_004333.4	600	GTg/AGg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254623	16254623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	273	836	0	ENST00000375759.3:c.1888C>T	p.Arg630Cys	p.R630C	ENST00000375759	NM_015001.2	630	Cgt/Tgt																																																																														
CASP8	841	MSKCC	GRCh37	2	202131301	202131301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	446	762	0	ENST00000358485.4:c.269C>T	p.Pro90Leu	p.P90L	ENST00000358485	NM_001080125.1	90	cCg/cTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66242749	66242749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	300	744	0	ENST00000273854.3:c.1823C>T	p.Ser608Phe	p.S608F	ENST00000273854	NM_004439.5	608	tCc/tTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085995	16085995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	334	766	2	ENST00000281043.3:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000281043	NM_005378.4	391	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108203609	108203609	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	196	422	0	ENST00000278616.4:c.7909C>T	p.Gln2637Ter	p.Q2637*	ENST00000278616	NM_000051.3	2637	Cag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638349	117638349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	185	767	2	ENST00000368508.3:c.6092G>A	p.Gly2031Glu	p.G2031E	ENST00000368508	NM_002944.2	2031	gGa/gAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453127	140453127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	621	774	0	ENST00000288602.6:c.1808G>A	p.Arg603Gln	p.R603Q	ENST00000288602	NM_004333.4	603	cGa/cAa																																																																														
FANCC	2176	MSKCC	GRCh37	9	98009731	98009731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	288	679	0	ENST00000289081.3:c.233C>T	p.Pro78Leu	p.P78L	ENST00000289081	NM_000136.2	78	cCt/cTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68939478	68939478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139157434		P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	258	654	2	ENST00000288368.4:c.463C>T	p.Arg155Trp	p.R155W	ENST00000288368	NM_024870.2	155	Cgg/Tgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68934283	68934283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	175	745	1	ENST00000288368.4:c.349C>T	p.Arg117Cys	p.R117C	ENST00000288368	NM_024870.2	117	Cgt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261553	16261553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	375	785	1	ENST00000375759.3:c.8818C>T	p.Pro2940Ser	p.P2940S	ENST00000375759	NM_015001.2	2940	Cct/Tct																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498712	246498712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	269	818	0	ENST00000388985.4:c.293C>T	p.Pro98Leu	p.P98L	ENST00000388985		98	cCt/cTt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100355	8100355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	853	1005	0	ENST00000346208.3:c.329C>T	p.Ser110Phe	p.S110F	ENST00000346208		110	tCc/tTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279657	123279657	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	376	486	0	ENST00000358487.5:c.775C>T	p.Gln259Ter	p.Q259*	ENST00000358487	NM_000141.4	259	Caa/Taa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310941	123310941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	397	515	0	ENST00000358487.5:c.487G>A	p.Glu163Lys	p.E163K	ENST00000358487	NM_000141.4	163	Gaa/Aaa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948385	71948385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138023922		P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	1044	1180	2	ENST00000298229.2:c.3097C>T	p.Arg1033Cys	p.R1033C	ENST00000298229	NM_001567.3	1033	Cgt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715780	18715780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	128	552	1	ENST00000266497.5:c.3611C>T	p.Ser1204Leu	p.S1204L	ENST00000266497		1204	tCg/tTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243824	46243824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	336	358	0	ENST00000334344.6:c.1918C>T	p.Pro640Ser	p.P640S	ENST00000334344	NM_152641.2	640	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433904	49433904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	537	1095	0	ENST00000301067.7:c.7649C>T	p.Pro2550Leu	p.P2550L	ENST00000301067	NM_003482.3	2550	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444737	49444737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	562	1208	1	ENST00000301067.7:c.2729C>T	p.Pro910Leu	p.P910L	ENST00000301067	NM_003482.3	910	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444809	49444809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	618	1145	0	ENST00000301067.7:c.2657C>T	p.Pro886Leu	p.P886L	ENST00000301067	NM_003482.3	886	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445613	49445613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	736	1421	3	ENST00000301067.7:c.1853C>T	p.Ser618Phe	p.S618F	ENST00000301067	NM_003482.3	618	tCc/tTc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856455	111856455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	364	519	0	ENST00000341259.2:c.506C>T	p.Ala169Val	p.A169V	ENST00000341259	NM_005475.2	169	gCt/gTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609637	28609637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	299	594	0	ENST00000241453.7:c.1592C>T	p.Ser531Phe	p.S531F	ENST00000241453	NM_004119.2	531	tCt/tTt																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675103	40675103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	360	1002	1	ENST00000249776.8:c.67G>A	p.Asp23Asn	p.D23N	ENST00000249776	NM_033286.3	23	Gat/Aat																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729162	66729163	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	328	828	1	ENST00000307102.5:c.370_371delCCinsTT	p.Pro124Leu	p.P124L	ENST00000307102	NM_002755.3	124	CCg/TTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133719	2133719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	744	858	0	ENST00000219476.3:c.3907G>A	p.Gly1303Arg	p.G1303R	ENST00000219476	NM_000548.3	1303	Gga/Aga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857368	9857368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	424	611	0	ENST00000330684.3:c.4033C>T	p.Pro1345Ser	p.P1345S	ENST00000330684	NM_001134407.1	1345	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857725	9857725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	426	521	0	ENST00000330684.3:c.3676G>A	p.Gly1226Ser	p.G1226S	ENST00000330684	NM_001134407.1	1226	Ggc/Agc																																																																														
CDH1	999	MSKCC	GRCh37	16	68835740	68835740	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	850	857	0	ENST00000261769.5:c.331T>C	p.Ser111Pro	p.S111P	ENST00000261769	NM_004360.3	111	Tcc/Ccc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346895	89346895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	256	310	1	ENST00000301030.4:c.6055C>T	p.Pro2019Ser	p.P2019S	ENST00000301030	NM_001256183.1	2019	Ccc/Tcc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118919	3118919	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	842	876	2	ENST00000078429.4:c.606-3C>T		p.X202_splice	ENST00000078429	NM_002067.2	202																																																																															
ALK	238	MSKCC	GRCh37	2	29416472	29416472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	968	991	2	ENST00000389048.3:c.4481G>A	p.Gly1494Glu	p.G1494E	ENST00000389048	NM_004304.4	1494	gGa/gAa																																																																														
REL	5966	MSKCC	GRCh37	2	61144086	61144086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	177	916	2	ENST00000295025.8:c.469C>T	p.Pro157Ser	p.P157S	ENST00000295025	NM_002908.2	157	Cct/Tct																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265501	198265501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	267	876	0	ENST00000335508.6:c.2656C>T	p.His886Tyr	p.H886Y	ENST00000335508	NM_012433.2	886	Cat/Tat																																																																														
CASP8	841	MSKCC	GRCh37	2	202131228	202131228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	410	611	0	ENST00000358485.4:c.196C>T	p.Leu66Phe	p.L66F	ENST00000358485	NM_001080125.1	66	Ctt/Ttt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543860	212543860	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	322	755	0	ENST00000342788.4:c.1539G>A	p.Trp513Ter	p.W513*	ENST00000342788	NM_005235.2	513	tgG/tgA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561325	9561325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	537	534	1	ENST00000353224.5:c.457G>A	p.Gly153Arg	p.G153R	ENST00000353224	NM_177990.2	153	Gga/Aga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385227	41385227	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	895	740	1	ENST00000373198.4:c.734A>T	p.His245Leu	p.H245L	ENST00000373198	NM_133170.3	245	cAc/cTc																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149243843	149243844	+	missense_variant	Missense_Mutation	DNP	TG	TG	GT			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	1188	896	3	ENST00000360632.3:c.974_975delCAinsAC	p.Thr325Asn	p.T325N	ENST00000360632	NM_015472.4	325	aCA/aAC																																																																														
KDR	3791	MSKCC	GRCh37	4	55955547	55955547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	173	832	0	ENST00000263923.4:c.3398C>T	p.Pro1133Leu	p.P1133L	ENST00000263923	NM_002253.2	1133	cCa/cTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540046	187540046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	190	603	0	ENST00000441802.2:c.7694C>T	p.Ser2565Leu	p.S2565L	ENST00000441802	NM_005245.3	2565	tCa/tTa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552813	106552813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	395	1150	0	ENST00000369096.4:c.778C>T	p.Pro260Ser	p.P260S	ENST00000369096	NM_001198.3	260	Ccc/Tcc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609828	117609828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	264	909	0	ENST00000368508.3:c.6871C>T	p.Pro2291Ser	p.P2291S	ENST00000368508	NM_002944.2	2291	Cct/Tct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151851528	151851528	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	269	398	0	ENST00000262189.6:c.11963T>A	p.Ile3988Lys	p.I3988K	ENST00000262189	NM_170606.2	3988	aTa/aAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151853320	151853320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	394	634	2	ENST00000262189.6:c.11782G>A	p.Gly3928Arg	p.G3928R	ENST00000262189	NM_170606.2	3928	Gga/Aga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860563	151860563	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199597064		P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	554	710	0	ENST00000262189.6:c.10099C>T	p.Pro3367Ser	p.P3367S	ENST00000262189	NM_170606.2	3367	Cca/Tca																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38279347	38279347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	454	1126	0	ENST00000425967.3:c.1142C>T	p.Ser381Phe	p.S381F	ENST00000425967	NM_001174067.1	381	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968173	68968173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	263	993	0	ENST00000288368.4:c.1202G>A	p.Arg401Lys	p.R401K	ENST00000288368	NM_024870.2	401	aGa/aAa																																																																														
MYC	4609	MSKCC	GRCh37	8	128753098	128753098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	265	627	0	ENST00000377970.2:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000377970	NM_002467.4	420	tCc/tTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209632	98209633	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	529	677	0	ENST00000331920.6:c.3905_3906delCCinsTT	p.Pro1302Leu	p.P1302L	ENST00000331920	NM_000264.3	1302	cCC/cTT																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98215901	98215901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	764	886	0	ENST00000331920.6:c.3308C>T	p.Ala1103Val	p.A1103V	ENST00000331920	NM_000264.3	1103	gCc/gTc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250158	110250158	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	746	871	0	ENST00000374672.4:c.517T>A	p.Tyr173Asn	p.Y173N	ENST00000374672	NM_004235.4	173	Tat/Aat																																																																														
RET	5979	MSKCC	GRCh37	10	43595967	43595968	+	missense_variant	Missense_Mutation	DNP	CA	CA	GG			P-0015261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	795	963	0	ENST00000355710.3:c.134_135delCAinsGG	p.Ala45Gly	p.A45G	ENST00000355710	NM_020975.4	45	gCA/gGG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	76	496	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	102	471	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	97	553	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271969	18271969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	67	319	0	ENST00000222254.8:c.572C>T	p.Ser191Leu	p.S191L	ENST00000222254	NM_005027.3	191	tCg/tTg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430425	181430425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	125	653	1	ENST00000325404.1:c.277G>A	p.Glu93Lys	p.E93K	ENST00000325404	NM_003106.3	93	Gag/Aag																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431634	6431634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	93	423	0	ENST00000356142.4:c.187G>A	p.Asp63Asn	p.D63N	ENST00000356142	NM_018890.3	63	Gat/Aat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16203058	16203058	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	101	395	0	ENST00000375759.3:c.766C>T	p.Gln256Ter	p.Q256*	ENST00000375759	NM_015001.2	256	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023214	27023226	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCCCTAGGCC	CGGGCCCTAGGCC	-			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	45	411	0	ENST00000324856.7:c.322_334del	p.Gly108ProfsTer2	p.G108Pfs*2	ENST00000324856	NM_006015.4	107	gCGGGCCCTAGGCCc/gc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094360	27094360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	90	400	0	ENST00000324856.7:c.3068G>A	p.Trp1023Ter	p.W1023*	ENST00000324856	NM_006015.4	1023	tGg/tAg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743805	46743806	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	79	508	0	ENST00000371975.4:c.2095_2096del	p.Cys699HisfsTer12	p.C699Hfs*12	ENST00000371975	NM_003579.3	699	TGc/c																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78433858	78433858	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	45	300	0	ENST00000370768.2:c.241C>T	p.Gln81Ter	p.Q81*	ENST00000370768	NM_003902.3	81	Caa/Taa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115262243	115262243	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	114	490	1	ENST00000438362.2:c.2311C>T	p.Gln771Ter	p.Q771*	ENST00000438362	NM_001242891.1	771	Cag/Tag																																																																														
MCL1	4170	MSKCC	GRCh37	1	150550890	150550890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	99	353	0	ENST00000369026.2:c.766G>A	p.Asp256Asn	p.D256N	ENST00000369026	NM_021960.4	256	Gac/Aac																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981761	101981761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	122	542	0	ENST00000282441.5:c.182C>T	p.Ser61Leu	p.S61L	ENST00000282441	NM_001130145.2	61	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108225575	108225575	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	81	360	0	ENST00000278616.4:c.8824C>T	p.Gln2942Ter	p.Q2942*	ENST00000278616	NM_000051.3	2942	Cag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118371719	118371719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	43	196	1	ENST00000534358.1:c.6176G>A	p.Trp2059Ter	p.W2059*	ENST00000534358	NM_005933.3	2059	tGg/tAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415878	49415878	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	66	346	0	ENST00000301067.7:c.16469A>G	p.Lys5490Arg	p.K5490R	ENST00000301067	NM_003482.3	5490	aAa/aGa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56477621	56477621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	105	523	0	ENST00000267101.3:c.169G>A	p.Glu57Lys	p.E57K	ENST00000267101	NM_001982.3	57	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495496	56495496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	88	498	0	ENST00000267101.3:c.3686C>T	p.Ser1229Leu	p.S1229L	ENST00000267101	NM_001982.3	1229	tCa/tTa																																																																														
POLE	5426	MSKCC	GRCh37	12	133215887	133215887	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	40	259	0	ENST00000320574.5:c.5379-3C>T		p.X1793_splice	ENST00000320574	NM_006231.2	1793																																																																															
POLE	5426	MSKCC	GRCh37	12	133226101	133226101	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	69	463	0	ENST00000320574.5:c.3796G>A	p.Glu1266Lys	p.E1266K	ENST00000320574	NM_006231.2	1266	Gag/Aag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912262	32912262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	86	442	0	ENST00000380152.3:c.3770C>T	p.Pro1257Leu	p.P1257L	ENST00000380152		1257	cCa/cTa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103506193	103506193	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	100	430	0	ENST00000355739.4:c.351A>C	p.Gln117His	p.Q117H	ENST00000355739	NM_000123.3	117	caA/caC																																																																														
IDH2	3418	MSKCC	GRCh37	15	90645507	90645507	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	10	52	0	ENST00000330062.3:c.115+1G>A		p.X39_splice	ENST00000330062	NM_002168.2	39																																																																															
TSC2	7249	MSKCC	GRCh37	16	2098710	2098710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	79	578	0	ENST00000219476.3:c.94G>A	p.Glu32Lys	p.E32K	ENST00000219476	NM_000548.3	32	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29559158	29559158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs9907627		P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	113	370	0	ENST00000358273.4:c.3265G>A	p.Glu1089Lys	p.E1089K	ENST00000358273	NM_001042492.2	1089	Gaa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864665	37864665	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	97	566	0	ENST00000269571.5:c.317A>G	p.Gln106Arg	p.Q106R	ENST00000269571		106	cAg/cGg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096885	11096885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	127	812	0	ENST00000344626.4:c.376G>C	p.Gly126Arg	p.G126R	ENST00000344626	NM_003072.3	126	Ggc/Cgc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860620	45860620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	112	684	0	ENST00000391945.4:c.1387C>T	p.Pro463Ser	p.P463S	ENST00000391945	NM_000400.3	463	Ccg/Tcg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442569	52442569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	89	427	1	ENST00000460680.1:c.176G>C	p.Arg59Pro	p.R59P	ENST00000460680	NM_004656.3	59	cGg/cCg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72861879	72861879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	118	511	0	ENST00000325599.8:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000325599	NM_018130.2	335	Cgc/Tgc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430778	181430778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	130	687	0	ENST00000325404.1:c.630G>A	p.Met210Ile	p.M210I	ENST00000325404	NM_003106.3	210	atG/atA																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502386	186502386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	68	268	0	ENST00000323963.5:c.109G>A	p.Asp37Asn	p.D37N	ENST00000323963		37	Gat/Aat																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1953841	1953841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	84	543	0	ENST00000382891.5:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000382891	NM_133335.3	674	Gag/Aag																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384656	84384656	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	94	435	0	ENST00000321945.7:c.787C>T	p.Gln263Ter	p.Q263*	ENST00000321945	NM_139076.2	263	Cag/Tag																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081670	143081670	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	86	292	0	ENST00000262992.4:c.1404T>G	p.Ser468Arg	p.S468R	ENST00000262992	NM_001101669.1	468	agT/agG																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526232	31526232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	120	683	0	ENST00000344624.3:c.808G>A	p.Asp270Asn	p.D270N	ENST00000344624		270	Gac/Aac																																																																														
RAD50	10111	MSKCC	GRCh37	5	131925500	131925500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	74	323	0	ENST00000265335.6:c.1423C>T	p.Leu475Phe	p.L475F	ENST00000265335		475	Ctt/Ttt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562378	176562378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	102	513	0	ENST00000439151.2:c.274G>A	p.Asp92Asn	p.D92N	ENST00000439151	NM_022455.4	92	Gat/Aat																																																																														
FYN	2534	MSKCC	GRCh37	6	111983048	111983048	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	94	534	0	ENST00000368678.4:c.1499G>A	p.Trp500Ter	p.W500*	ENST00000368678		500	tGg/tAg																																																																														
HGF	3082	MSKCC	GRCh37	7	81335614	81335614	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201395847		P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	65	374	0	ENST00000222390.5:c.1746G>A	p.Met582Ile	p.M582I	ENST00000222390	NM_000601.4	582	atG/atA																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38189089	38189089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	168	414	0	ENST00000317025.8:c.925C>T	p.His309Tyr	p.H309Y	ENST00000317025	NM_023034.1	309	Cat/Tat																																																																														
MYC	4609	MSKCC	GRCh37	8	128750937	128750937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	152	356	3	ENST00000377970.2:c.474G>T	p.Lys158Asn	p.K158N	ENST00000377970	NM_002467.4	158	aaG/aaT																																																																														
AGO2	27161	MSKCC	GRCh37	8	141582921	141582921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1226	99	561	4	ENST00000220592.5:c.326G>A	p.Gly109Glu	p.G109E	ENST00000220592	NM_012154.3	109	gGg/gAg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923484	36923484	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	83	573	0	ENST00000358127.4:c.781-3C>T		p.X261_splice	ENST00000358127	NM_001280556.1	261																																																																															
PPP6C	5537	MSKCC	GRCh37	9	127915831	127915831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	79	343	1	ENST00000373547.4:c.650G>A	p.Gly217Glu	p.G217E	ENST00000373547	NM_002721.4	217	gGa/gAa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135782757	135782757	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	57	258	0	ENST00000298552.3:c.1264G>A	p.Glu422Lys	p.E422K	ENST00000298552	NM_001162426.1	422	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922704	44922704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	77	162	0	ENST00000377967.4:c.1565G>A	p.Gly522Glu	p.G522E	ENST00000377967	NM_021140.2	522	gGa/gAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939951	76939951	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	110	248	0	ENST00000373344.5:c.797A>T	p.Tyr266Phe	p.Y266F	ENST00000373344	NM_000489.3	266	tAc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	47	448	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	98	487	0				ENST00000310581	NM_198253.2																																																																																
NFKBIA	4792	MSKCC	GRCh37	14	35873756	35873756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	71	596	0	ENST00000216797.5:c.95G>A	p.Ser32Asn	p.S32N	ENST00000216797	NM_020529.2	32	aGc/aAc																																																																														
STK11	6794	MSKCC	GRCh37	19	1207009	1207009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	63	567	0	ENST00000326873.7:c.97G>T	p.Glu33Ter	p.E33*	ENST00000326873	NM_000455.4	33	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023439	27023448	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCGCTGCA	CAGCGCTGCA	-			P-0015271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	50	571	0	ENST00000324856.7:c.545_554delCAGCGCTGCA	p.Ala182GlyfsTer47	p.A182Gfs*47	ENST00000324856	NM_006015.4	182	gCAGCGCTGCAg/gg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256258	41256259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	35	281	0	ENST00000357654.3:c.321dup	p.Ala108CysfsTer6	p.A108Cfs*6	ENST00000357654	NM_007294.3	107	-/T																																																																														
CUL3	8452	MSKCC	GRCh37	2	225346798	225346798	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0015271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	29	236	0	ENST00000264414.4:c.1843-3C>A		p.X615_splice	ENST00000264414	NM_003590.4	615																																																																															
PPARG	5468	MSKCC	GRCh37	3	12434139	12434139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	30	300	0	ENST00000287820.6:c.507G>T	p.Leu169Phe	p.L169F	ENST00000287820	NM_015869.4	169	ttG/ttT																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434148	12434148	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	31	337	0	ENST00000287820.6:c.516C>G	p.Ile172Met	p.I172M	ENST00000287820	NM_015869.4	172	atC/atG																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591142	67591154	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CAATACTTGATGT	CAATACTTGATGT	-			P-0015271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	42	237	0	ENST00000274335.5:c.1735_1745+2delCAATACTTGATGT		p.X579_splice	ENST00000274335		579																																																																															
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	203	340	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	426	684	2	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413637	138413637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	309	579	0	ENST00000289153.2:c.1883G>A	p.Arg628Gln	p.R628Q	ENST00000289153	NM_006219.2	628	cGa/cAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	91	625	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	690	797	4	ENST00000263388.2:c.125delC	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	420	774	3	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	468	958	0	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126730	5126730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	304	613	0	ENST00000381652.3:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000381652	NM_004972.3	1113	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	215	419	1	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157511329	157511329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	230	428	0	ENST00000346085.5:c.3851delG	p.Gly1284GlufsTer2	p.G1284Efs*2	ENST00000346085	NM_020732.3	1283	Ggg/gg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	408	678	1	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52712580	52712580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	371	668	1	ENST00000394830.3:c.172C>T	p.Arg58Ter	p.R58*	ENST00000394830	NM_018313.4	58	Cga/Tga																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370236	40370236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764965457		P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	215	832	15	ENST00000293328.3:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000293328	NM_012448.3	368	Cag/ag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210837	2210837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	545	473	0	ENST00000398665.3:c.1334C>T	p.Ala445Val	p.A445V	ENST00000398665	NM_032482.2	445	gCg/gTg																																																																														
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	387	681	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306638	41306638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	347	772	2	ENST00000373198.4:c.1021G>A	p.Asp341Asn	p.D341N	ENST00000373198	NM_133170.3	341	Gac/Aac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	388	900	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729603	41729603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	280	538	1	ENST00000242208.4:c.926G>A	p.Arg309Gln	p.R309Q	ENST00000242208	NM_002192.2	309	cGg/cAg																																																																														
MST1	4485	MSKCC	GRCh37	3	49723126	49723128	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	395	702	0	ENST00000449682.2:c.1288_1290delGAG	p.Glu430del	p.E430del	ENST00000449682	NM_020998.3	430	GAG/-																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	338	643	1	ENST00000318789.4:c.1240delC	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg																																																																														
ATR	545	MSKCC	GRCh37	3	142232477	142232477	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	279	424	2	ENST00000350721.4:c.4507C>T	p.Arg1503Ter	p.R1503*	ENST00000350721	NM_001184.3	1503	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438211	49438211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	428	793	0	ENST00000301067.7:c.5058delA	p.Lys1686AsnfsTer36	p.K1686Nfs*36	ENST00000301067	NM_003482.3	1686	aaA/aa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143191881	143191881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184155869		P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	303	641	1	ENST00000262992.4:c.550G>A	p.Val184Met	p.V184M	ENST00000262992	NM_001101669.1	184	Gtg/Atg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	527	845	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2493111	2493111	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	198	399	0	ENST00000355716.4:c.552-1G>A		p.X184_splice	ENST00000355716	NM_003820.2	184																																																																															
SESN2	83667	MSKCC	GRCh37	1	28599234	28599234	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	428	801	2	ENST00000253063.3:c.685delC	p.Gln229ArgfsTer18	p.Q229Rfs*18	ENST00000253063	NM_031459.4	227	gCc/gc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120461100	120461100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	283	648	0	ENST00000256646.2:c.5858G>A	p.Arg1953His	p.R1953H	ENST00000256646	NM_024408.3	1953	cGc/cAc																																																																														
FH	2271	MSKCC	GRCh37	1	241671943	241671943	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28933069		P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	120	747	1	ENST00000366560.3:c.698G>A	p.Arg233His	p.R233H	ENST00000366560	NM_000143.3	233	cGt/cAt																																																																														
RET	5979	MSKCC	GRCh37	10	43606856	43606856	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs9282834		P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	376	876	5	ENST00000355710.3:c.1465G>A	p.Asp489Asn	p.D489N	ENST00000355710	NM_020975.4	489	Gac/Aac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941430	71941430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	132	870	1	ENST00000298229.2:c.1115G>A	p.Arg372His	p.R372H	ENST00000298229	NM_001567.3	372	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434811	49434811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	568	947	3	ENST00000301067.7:c.6742C>T	p.Arg2248Cys	p.R2248C	ENST00000301067	NM_003482.3	2248	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435706	49435706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	349	668	0	ENST00000301067.7:c.6177delC	p.Tyr2060ThrfsTer34	p.Y2060Tfs*34	ENST00000301067	NM_003482.3	2059	ccC/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436109	49436109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	135	303	1	ENST00000301067.7:c.5872C>T	p.Arg1958Cys	p.R1958C	ENST00000301067	NM_003482.3	1958	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445673	49445673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	558	1126	3	ENST00000301067.7:c.1793G>A	p.Arg598His	p.R598H	ENST00000301067	NM_003482.3	598	cGt/cAt																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50492742	50492742	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	341	636	0	ENST00000394963.4:c.1507C>T	p.Arg503Ter	p.R503*	ENST00000394963	NM_003076.4	503	Cga/Tga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864195	57864195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	264	494	0	ENST00000228682.2:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000228682	NM_005269.2	558	Cgc/Tgc																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869534	102869534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	315	687	1	ENST00000307046.8:c.107C>T	p.Ala36Val	p.A36V	ENST00000307046	NM_001111285.1	36	gCg/gTg																																																																														
SETD8	387893	MSKCC	GRCh37	12	123889576	123889576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	182	262	2	ENST00000330479.4:c.803C>T	p.Thr268Met	p.T268M	ENST00000330479	NM_020382.3	268	aCg/aTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99472873	99472873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	310	640	0	ENST00000268035.6:c.2869G>A	p.Val957Ile	p.V957I	ENST00000268035	NM_000875.3	957	Gtc/Atc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2125838	2125838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	448	940	3	ENST00000219476.3:c.2584G>A	p.Ala862Thr	p.A862T	ENST00000219476	NM_000548.3	862	Gcg/Acg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2127694	2127694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	307	588	2	ENST00000219476.3:c.2933G>A	p.Arg978His	p.R978H	ENST00000219476	NM_000548.3	978	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779773	3779773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	354	751	0	ENST00000262367.5:c.5275C>T	p.Pro1759Ser	p.P1759S	ENST00000262367	NM_004380.2	1759	Cca/Tca																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3842075	3842075	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	289	511	0	ENST00000262367.5:c.1237C>T	p.Arg413Ter	p.R413*	ENST00000262367	NM_004380.2	413	Cga/Tga																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622383	1622383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1435	109	881	2	ENST00000344749.5:c.581G>A	p.Gly194Asp	p.G194D	ENST00000344749	NM_001136139.2	194	gGc/gAc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11019828	11019828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	833	739	0	ENST00000327064.4:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000327064	NM_199141.1	168	cGg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272527	15272528	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	G			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	84	570	0	ENST00000263388.2:c.5914-3dupC		p.X1972_splice	ENST00000263388	NM_000435.2	1972																																																																															
SOS1	6654	MSKCC	GRCh37	2	39233665	39233665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	61	490	0	ENST00000402219.2:c.2679A>G	p.Ile893Met	p.I893M	ENST00000402219	NM_005633.3	893	atA/atG																																																																														
MSH2	4436	MSKCC	GRCh37	2	47705600	47705606	+	frameshift_variant	Frame_Shift_Del	DEL	ACATGTC	ACATGTC	-			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	281	526	0	ENST00000233146.2:c.2403_2409delTGTCACA	p.His801GlnfsTer9	p.H801Qfs*9	ENST00000233146	NM_000251.2	800	ctACATGTC/ct																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026524	48026524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	311	512	0	ENST00000234420.5:c.1402C>T	p.Arg468Cys	p.R468C	ENST00000234420	NM_000179.2	468	Cgt/Tgt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279991	46279991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	144	910	1	ENST00000371998.3:c.3917C>T	p.Pro1306Leu	p.P1306L	ENST00000371998		1306	cCg/cTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620706	52620707	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	G			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	99	299	0	ENST00000394830.3:c.3049-3dupC		p.X1017_splice	ENST00000394830	NM_018313.4	1017																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71021784	71021784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	257	427	0	ENST00000318789.4:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000318789	NM_032682.5	525	cGa/cAa																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73113216	73113216	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	44	126	0	ENST00000356692.5:c.561del	p.Met188Ter	p.M188*	ENST00000356692		186	gCc/gc																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260150	149260150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	278	565	0	ENST00000360632.3:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000360632	NM_015472.4	248	cGa/cAa																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99806134	99806134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	112	161	0	ENST00000280892.6:c.538G>T	p.Gly180Cys	p.G180C	ENST00000280892	NM_001130678.1	180	Ggt/Tgt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673702	176673702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	301	497	1	ENST00000439151.2:c.4402C>T	p.Pro1468Ser	p.P1468S	ENST00000439151	NM_022455.4	1468	Cca/Tca																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673711	176673711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	321	517	0	ENST00000439151.2:c.4411C>T	p.Arg1471Ter	p.R1471*	ENST00000439151	NM_022455.4	1471	Cga/Tga																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553441	106553441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	180	320	0	ENST00000369096.4:c.1406C>T	p.Ser469Leu	p.S469L	ENST00000369096	NM_001198.3	469	tCg/tTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100172	157100172	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	109	161	0	ENST00000346085.5:c.1114delC	p.Arg372GlyfsTer7	p.R372Gfs*7	ENST00000346085	NM_020732.3	370	tCc/tc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151851508	151851508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	231	475	2	ENST00000262189.6:c.11983C>T	p.Arg3995Ter	p.R3995*	ENST00000262189	NM_170606.2	3995	Cga/Tga																																																																														
JAK2	3717	MSKCC	GRCh37	9	5050833	5050833	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	383	639	0	ENST00000381652.3:c.614+2T>C		p.X205_splice	ENST00000381652	NM_004972.3	205																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465603	8465603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	372	735	0	ENST00000356435.5:c.3577G>A	p.Ala1193Thr	p.A1193T	ENST00000356435		1193	Gcc/Acc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250034	110250034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	258	609	0	ENST00000374672.4:c.641C>T	p.Pro214Leu	p.P214L	ENST00000374672	NM_004235.4	214	cCg/cTg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127911968	127911968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	318	541	0	ENST00000373547.4:c.902C>T	p.Thr301Met	p.T301M	ENST00000373547	NM_002721.4	301	aCg/aTg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652464	48652464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	470	458	0	ENST00000376670.3:c.1135C>A	p.Leu379Ile	p.L379I	ENST00000376670	NM_002049.3	379	Ctc/Atc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223340	53223340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	444	362	0	ENST00000375401.3:c.4019G>A	p.Ser1340Asn	p.S1340N	ENST00000375401	NM_004187.3	1340	aGt/aAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	204	431	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	112	298	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	112	298	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	62	270	0				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	10032038	10032038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	114	541	0	ENST00000330684.3:c.785C>T	p.Ser262Phe	p.S262F	ENST00000330684	NM_001134407.1	262	tCt/tTt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	11	24	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295253	1295253	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	35	279	0				ENST00000310581	NM_198253.2																																																																																
FLT1	2321	MSKCC	GRCh37	13	29001438	29001438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	90	258	0	ENST00000282397.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000282397	NM_002019.4	432	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	73	283	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174420	11174420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	226	578	0	ENST00000361445.4:c.7255G>A	p.Glu2419Lys	p.E2419K	ENST00000361445	NM_004958.3	2419	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	112	298	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151876977	151876977	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	50	369	0	ENST00000262189.6:c.7384C>T	p.Gln2462Ter	p.Q2462*	ENST00000262189	NM_170606.2	2462	Cag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319902	8319902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	132	354	0	ENST00000356435.5:c.5599G>A	p.Glu1867Lys	p.E1867K	ENST00000356435		1867	Gaa/Aaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70405491	70405491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	108	538	0	ENST00000373644.4:c.3005C>T	p.Ser1002Leu	p.S1002L	ENST00000373644	NM_030625.2	1002	tCa/tTa																																																																														
ATM	472	MSKCC	GRCh37	11	108155094	108155094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	148	445	0	ENST00000278616.4:c.3887C>T	p.Pro1296Leu	p.P1296L	ENST00000278616	NM_000051.3	1296	cCt/cTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133210860	133210861	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	113	526	0	ENST00000320574.5:c.5915_5916delTGinsAT	p.Val1972Asp	p.V1972D	ENST00000320574	NM_006231.2	1972	gTG/gAT																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582133	95582133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	136	289	0	ENST00000343455.3:c.1778C>T	p.Ser593Leu	p.S593L	ENST00000343455	NM_177438.2	593	tCg/tTg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246552	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	28	394	0	ENST00000349310.3:c.48_49delGGinsAA	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	16	ggGGag/ggAAag																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805399	46805399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	108	659	0	ENST00000290295.7:c.557G>A	p.Gly186Glu	p.G186E	ENST00000290295	NM_006361.5	186	gGa/gAa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15383840	15383840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	88	488	0	ENST00000263377.2:c.71C>T	p.Ser24Phe	p.S24F	ENST00000263377	NM_058243.2	24	tCc/tTc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172227	99172227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	56	505	0	ENST00000074304.5:c.1793C>T	p.Pro598Leu	p.P598L	ENST00000074304	NM_001134224.1	598	cCc/cTc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793268	242793268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	52	544	1	ENST00000334409.5:c.809G>A	p.Gly270Asp	p.G270D	ENST00000334409	NM_005018.2	270	gGc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40828008	40828008	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	85	286	0	ENST00000373198.4:c.2420A>C	p.Lys807Thr	p.K807T	ENST00000373198	NM_133170.3	807	aAg/aCg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514558	41514558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	113	517	1	ENST00000373198.4:c.103G>A	p.Asp35Asn	p.D35N	ENST00000373198	NM_133170.3	35	Gat/Aat																																																																														
TP63	8626	MSKCC	GRCh37	3	189526275	189526275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	165	445	1	ENST00000264731.3:c.539C>T	p.Ser180Phe	p.S180F	ENST00000264731	NM_003722.4	180	tCc/tTc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38964910	38964910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	49	254	0	ENST00000357387.3:c.1384C>T	p.Pro462Ser	p.P462S	ENST00000357387	NM_152756.3	462	Ccc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974318	93974318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	125	440	0	ENST00000369303.4:c.1736G>A	p.Gly579Glu	p.G579E	ENST00000369303	NM_004440.3	579	gGg/gAg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016251	150016251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	65	426	0	ENST00000253339.5:c.455C>T	p.Ala152Val	p.A152V	ENST00000253339		152	gCt/gTt																																																																														
PARK2	5071	MSKCC	GRCh37	6	161771213	161771213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	151	452	1	ENST00000366898.1:c.1316C>T	p.Pro439Leu	p.P439L	ENST00000366898	NM_004562.2	439	cCc/cTc																																																																														
MET	4233	MSKCC	GRCh37	7	116397711	116397711	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	190	452	0	ENST00000397752.3:c.1985T>A	p.Ile662Asn	p.I662N	ENST00000397752	NM_000245.2	662	aTt/aAt																																																																														
MET	4233	MSKCC	GRCh37	7	116435749	116435749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	183	426	0	ENST00000397752.3:c.3839G>A	p.Gly1280Glu	p.G1280E	ENST00000397752	NM_000245.2	1280	gGa/gAa																																																																														
MET	4233	MSKCC	GRCh37	7	116436044	116436044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	154	456	1	ENST00000397752.3:c.4039G>A	p.Glu1347Lys	p.E1347K	ENST00000397752	NM_000245.2	1347	Gag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116436096	116436096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	195	358	0	ENST00000397752.3:c.4091C>T	p.Pro1364Leu	p.P1364L	ENST00000397752	NM_000245.2	1364	cCg/cTg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523680	148523680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	66	302	0	ENST00000320356.2:c.773C>T	p.Pro258Leu	p.P258L	ENST00000320356	NM_004456.4	258	cCt/cTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931862	68931862	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200600940		P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	215	670	0	ENST00000288368.4:c.292G>A	p.Glu98Lys	p.E98K	ENST00000288368	NM_024870.2	98	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939021	76939021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	143	265	0	ENST00000373344.5:c.1727C>T	p.Ser576Leu	p.S576L	ENST00000373344	NM_000489.3	576	tCa/tTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435667	18435667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	59	174	0	ENST00000266497.5:c.652G>A	p.Glu218Lys	p.E218K	ENST00000266497		218	Gaa/Aaa																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	295	356	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
TP63	8626	MSKCC	GRCh37	3	189526119	189526119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	200	506	0	ENST00000264731.3:c.383C>T	p.Ser128Phe	p.S128F	ENST00000264731	NM_003722.4	128	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	109	358	0	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636143	28636143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	1181	399	0	ENST00000241453.7:c.229G>A	p.Glu77Lys	p.E77K	ENST00000241453	NM_004119.2	77	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984848	9984848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	158	400	1	ENST00000330684.3:c.1117G>A	p.Glu373Lys	p.E373K	ENST00000330684	NM_001134407.1	373	Gaa/Aaa																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22221708	22221709	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCG			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	10	85	0	ENST00000215832.6:c.20_22dupCGG	p.Ala7dup	p.A7dup	ENST00000215832	NM_002745.4	7	ggc/gCGGgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	600	289	0				ENST00000310581	NM_198253.2																																																																																
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	294	261	1	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907674	111907674	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	771	282	0	ENST00000393256.3:c.448C>T	p.Gln150Ter	p.Q150*	ENST00000393256	NM_006538.4	150	Caa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507308	8507308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	201	256	1	ENST00000356435.5:c.1670G>A	p.Gly557Glu	p.G557E	ENST00000356435		557	gGa/gAa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867256	45867256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	308	589	0	ENST00000391945.4:c.937G>A	p.Glu313Lys	p.E313K	ENST00000391945	NM_000400.3	313	Gaa/Aaa																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664880	138664880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	115	92	0	ENST00000330315.3:c.685G>A	p.Ala229Thr	p.A229T	ENST00000330315	NM_023067.3	229	Gct/Act																																																																														
CBL	867	MSKCC	GRCh37	11	119148875	119148876	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	205	249	2	ENST00000264033.4:c.1096-1_1096delGGinsAA		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679835	88679835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	131	256	0	ENST00000360948.2:c.628C>T	p.Pro210Ser	p.P210S	ENST00000360948	NM_001012338.2	210	Cct/Tct																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164691	36164691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	314	595	2	ENST00000300305.3:c.1184C>T	p.Pro395Leu	p.P395L	ENST00000300305		395	cCg/cTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255076	16255076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	289	395	0	ENST00000375759.3:c.2341C>T	p.Arg781Cys	p.R781C	ENST00000375759	NM_015001.2	781	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099457	27099457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	283	322	0	ENST00000324856.7:c.3694C>T	p.Pro1232Ser	p.P1232S	ENST00000324856	NM_006015.4	1232	Cct/Tct																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846300	156846300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150579345		P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	895	565	0	ENST00000524377.1:c.1741G>A	p.Glu581Lys	p.E581K	ENST00000524377	NM_002529.3	581	Gag/Aag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46242654	46242654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	138	254	1	ENST00000334344.6:c.1616C>T	p.Ser539Phe	p.S539F	ENST00000334344	NM_152641.2	539	tCt/tTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133254204	133254204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	414	383	1	ENST00000320574.5:c.680C>T	p.Pro227Leu	p.P227L	ENST00000320574	NM_006231.2	227	cCc/cTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893351	32893351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	763	490	0	ENST00000380152.3:c.205C>T	p.Pro69Ser	p.P69S	ENST00000380152		69	Cca/Tca																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41239911	41239911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	76	119	0	ENST00000379561.5:c.439G>A	p.Gly147Arg	p.G147R	ENST00000379561	NM_002015.3	147	Ggg/Agg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222591	2222592	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	208	449	1	ENST00000326181.6:c.785_786delinsTT	p.Ser262Phe	p.S262F	ENST00000326181	NM_032271.2	262	tCC/tTT																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30133232	30133232	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	206	420	0	ENST00000263025.4:c.266T>A	p.Ile89Asn	p.I89N	ENST00000263025	NM_002746.2	89	aTc/aAc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89837041	89837041	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	550	574	0	ENST00000389301.3:c.2153C>T	p.Ala718Val	p.A718V	ENST00000389301	NM_000135.2	718	gCt/gTt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15964858	15964858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	494	403	0	ENST00000268712.3:c.5738C>T	p.Ser1913Phe	p.S1913F	ENST00000268712	NM_006311.3	1913	tCc/tTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097222	11097222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	238	484	0	ENST00000344626.4:c.713C>T	p.Pro238Leu	p.P238L	ENST00000344626	NM_003072.3	238	cCc/cTc																																																																														
BBC3	27113	MSKCC	GRCh37	19	47725011	47725011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	669	693	0	ENST00000449228.1:c.733C>T	p.Leu245Phe	p.L245F	ENST00000449228	NM_001127240.2	245	Ctc/Ttc																																																																														
ALK	238	MSKCC	GRCh37	2	29917772	29917772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	1255	496	0	ENST00000389048.3:c.896C>T	p.Ser299Phe	p.S299F	ENST00000389048	NM_004304.4	299	tCc/tTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198269819	198269819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	528	461	0	ENST00000335508.6:c.1520G>A	p.Gly507Glu	p.G507E	ENST00000335508	NM_012433.2	507	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286822	212286822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	219	307	0	ENST00000342788.4:c.2874G>A	p.Met958Ile	p.M958I	ENST00000342788	NM_005235.2	958	atG/atA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624780	9624780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	112	294	0	ENST00000353224.5:c.197C>T	p.Pro66Leu	p.P66L	ENST00000353224	NM_177990.2	66	cCt/cTt																																																																														
SRC	6714	MSKCC	GRCh37	20	36030956	36030956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	222	510	0	ENST00000358208.4:c.1235G>A	p.Arg412Gln	p.R412Q	ENST00000358208		412	cGg/cAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100905	41100905	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	144	373	1	ENST00000373198.4:c.1450+1G>A		p.X484_splice	ENST00000373198	NM_133170.3	484																																																																															
SETD2	29072	MSKCC	GRCh37	3	47125739	47125739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	152	267	0	ENST00000409792.3:c.5531C>T	p.Ser1844Phe	p.S1844F	ENST00000409792	NM_014159.6	1844	tCt/tTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163935	47163935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	204	194	0	ENST00000409792.3:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000409792	NM_014159.6	731	Gac/Aac																																																																														
ATR	545	MSKCC	GRCh37	3	142231286	142231287	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	407	376	0	ENST00000350721.4:c.4667dup	p.His1558AlafsTer2	p.H1558Afs*2	ENST00000350721	NM_001184.3	1556	cta/ctTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139822	55139822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	191	377	0	ENST00000257290.5:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000257290	NM_006206.4	495	Gag/Aag																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143114327	143114328	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	211	301	0	ENST00000262992.4:c.1093_1094delinsTT	p.Thr365Phe	p.T365F	ENST00000262992	NM_001101669.1	365	ACt/TTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332745	153332745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	151	334	0	ENST00000281708.4:c.211G>A	p.Asp71Asn	p.D71N	ENST00000281708	NM_033632.3	71	Gat/Aat																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965575	93965575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	109	346	0	ENST00000369303.4:c.2353G>A	p.Asp785Asn	p.D785N	ENST00000369303	NM_004440.3	785	Gat/Aat																																																																														
FYN	2534	MSKCC	GRCh37	6	112041061	112041061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	202	351	0	ENST00000368678.4:c.194G>A	p.Gly65Glu	p.G65E	ENST00000368678		65	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631443	117631443	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	80	260	0	ENST00000368508.3:c.6235G>A	p.Asp2079Asn	p.D2079N	ENST00000368508	NM_002944.2	2079	Gat/Aat																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005032	150005032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	104	302	0	ENST00000253339.5:c.1193C>T	p.Ser398Leu	p.S398L	ENST00000253339		398	tCg/tTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505553	157505554	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	54	173	2	ENST00000346085.5:c.3534_3535delinsTT	p.Gln1179Ter	p.Q1179*	ENST00000346085	NM_020732.3	1178	ctCCag/ctTTag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522553	157522553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	297	686	0	ENST00000346085.5:c.4825C>T	p.Pro1609Ser	p.P1609S	ENST00000346085	NM_020732.3	1609	Cct/Tct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878231	151878231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	597	486	0	ENST00000262189.6:c.6714G>A	p.Met2238Ile	p.M2238I	ENST00000262189	NM_170606.2	2238	atG/atA																																																																														
PREX2	80243	MSKCC	GRCh37	8	68972943	68972943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	125	344	0	ENST00000288368.4:c.1268G>A	p.Gly423Glu	p.G423E	ENST00000288368	NM_024870.2	423	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCGGGTGAGAGTGGCG			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	221	306	0	ENST00000304494.5:c.225_243dup	p.Val82ArgfsTer44	p.V82Rfs*44	ENST00000304494	NM_000077.4	81	-/CGCCACTCTCACCCGACCC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCGGGTGAGAGTGGCG			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	221	306	0	ENST00000304494.5:c.225_243dup	p.Val82ArgfsTer44	p.V82Rfs*44	ENST00000304494	NM_000077.4	81	-/CGCCACTCTCACCCGACCC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCGGGTGAGAGTGGCG			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	221	306	0	ENST00000304494.5:c.225_243dup	p.Val82ArgfsTer44	p.V82Rfs*44	ENST00000304494	NM_000077.4	81	-/CGCCACTCTCACCCGACCC																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139802645	139802645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	686	444	0	ENST00000247668.2:c.490C>T	p.Arg164Trp	p.R164W	ENST00000247668	NM_021138.3	164	Cgg/Tgg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913140	39913141	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	106	147	2	ENST00000378444.4:c.4974_4975delinsAA	p.Gly1659Arg	p.G1659R	ENST00000378444	NM_001123385.1	1658	caGGgg/caAAgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76829748	76829748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	134	292	0	ENST00000373344.5:c.6293G>A	p.Trp2098Ter	p.W2098*	ENST00000373344	NM_000489.3	2098	tGg/tAg																																																																														
MST1	4485	MSKCC	GRCh37	3	49726078	49726078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			10	28	12	0	ENST00000449682.2:c.47G>A	p.Gly16Glu	p.G16E	ENST00000449682	NM_020998.3	16	gGg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	408	515	0				ENST00000310581	NM_198253.2																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123310896	123310896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	178	425	0	ENST00000358487.5:c.532C>T	p.Arg178Cys	p.R178C	ENST00000358487	NM_000141.4	178	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	130	328	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542356	187542356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56790426		P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	292	335	1	ENST00000441802.2:c.5384G>A	p.Arg1795Gln	p.R1795Q	ENST00000441802	NM_005245.3	1795	cGa/cAa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926248	112926248	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	371	481	0	ENST00000351677.2:c.1381G>A	p.Ala461Thr	p.A461T	ENST00000351677	NM_002834.3	461	Gct/Act																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189427	56189427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	504	627	0	ENST00000399503.3:c.4459C>T	p.Arg1487Cys	p.R1487C	ENST00000399503	NM_005921.1	1487	Cgt/Tgt																																																																														
TP63	8626	MSKCC	GRCh37	3	189455576	189455576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	450	648	1	ENST00000264731.3:c.110G>A	p.Arg37Gln	p.R37Q	ENST00000264731	NM_003722.4	37	cGa/cAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140477859	140477859	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	482	604	0	ENST00000288602.6:c.1449A>C	p.Lys483Asn	p.K483N	ENST00000288602	NM_004333.4	483	aaA/aaC																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45799165	45799165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	546	744	0	ENST00000372115.3:c.226G>C	p.Val76Leu	p.V76L	ENST00000372115	NM_001048171.1	76	Gta/Cta																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510247	120510247	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	309	350	0	ENST00000256646.2:c.1265-3C>T		p.X422_splice	ENST00000256646	NM_024408.3	422																																																																															
TET1	80312	MSKCC	GRCh37	10	70404656	70404656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	601	752	0	ENST00000373644.4:c.2170G>A	p.Gly724Arg	p.G724R	ENST00000373644	NM_030625.2	724	Gga/Aga																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112769526	112769526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	254	760	0	ENST00000369452.4:c.1478T>C	p.Leu493Pro	p.L493P	ENST00000369452	NM_007373.3	493	cTt/cCt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425559	49425559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	676	1003	0	ENST00000301067.7:c.12929C>T	p.Pro4310Leu	p.P4310L	ENST00000301067	NM_003482.3	4310	cCa/cTa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112891115	112891115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	419	727	0	ENST00000351677.2:c.449del	p.Ser150LeufsTer18	p.S150Lfs*18	ENST00000351677	NM_002834.3	150	tCt/tt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435883	110435883	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	402	599	0	ENST00000375856.3:c.2518G>T	p.Glu840Ter	p.E840*	ENST00000375856	NM_003749.2	840	Gag/Tag																																																																														
AKT1	207	MSKCC	GRCh37	14	105239911	105239911	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	410	624	0	ENST00000349310.3:c.709T>C	p.Phe237Leu	p.F237L	ENST00000349310	NM_001014432.1	237	Ttc/Ctc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643498	38643498	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	544	606	0	ENST00000299084.4:c.968C>A	p.Ser323Ter	p.S323*	ENST00000299084	NM_152594.2	323	tCa/tAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781423	3781423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	449	555	0	ENST00000262367.5:c.4942C>T	p.Pro1648Ser	p.P1648S	ENST00000262367	NM_004380.2	1648	Ccc/Tcc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59934498	59934498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	397	398	0	ENST00000259008.2:c.300G>A	p.Met100Ile	p.M100I	ENST00000259008	NM_032043.2	100	atG/atA																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66520180	66520180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	418	486	0	ENST00000358598.2:c.464C>T	p.Ser155Leu	p.S155L	ENST00000358598	NM_212471.2	155	tCg/tTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226749	2226749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	811	835	0	ENST00000398665.3:c.4229C>T	p.Ala1410Val	p.A1410V	ENST00000398665	NM_032482.2	1410	gCc/gTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211154	36211154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	710	1134	1	ENST00000222270.7:c.905C>T	p.Pro302Leu	p.P302L	ENST00000222270	NM_014727.1	302	cCc/cTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198260837	198260837	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	409	598	0	ENST00000335508.6:c.3482T>G	p.Met1161Arg	p.M1161R	ENST00000335508	NM_012433.2	1161	aTg/aGg																																																																														
NF2	4771	MSKCC	GRCh37	22	30077591	30077591	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	755	518	0	ENST00000338641.4:c.1737+1G>A		p.X579_splice	ENST00000338641	NM_000268.3	579																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620532	52620532	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	471	575	0	ENST00000394830.3:c.3221C>G	p.Ser1074Cys	p.S1074C	ENST00000394830	NM_018313.4	1074	tCt/tGt																																																																														
TET2	54790	MSKCC	GRCh37	4	106180912	106180912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	300	378	0	ENST00000380013.4:c.3940G>A	p.Asp1314Asn	p.D1314N	ENST00000380013	NM_001127208.2	1314	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1294063	1294064	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	645	1096	1	ENST00000310581.5:c.937_938delinsTT	p.Pro313Leu	p.P313L	ENST00000310581	NM_198253.2	313	CCa/TTa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80160645	80160645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	453	684	0	ENST00000265081.6:c.3014C>T	p.Thr1005Ile	p.T1005I	ENST00000265081	NM_002439.4	1005	aCc/aTc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86665638	86665638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	98	306	0	ENST00000274376.6:c.1619G>A	p.Cys540Tyr	p.C540Y	ENST00000274376	NM_002890.2	540	tGt/tAt																																																																														
STK19	8859	MSKCC	GRCh37	6	31940145	31940145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1672	712	891	0	ENST00000375331.2:c.287C>T	p.Ser96Phe	p.S96F	ENST00000375331	NM_004197.1	96	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066683	94066683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	436	618	3	ENST00000369303.4:c.1076G>A	p.Gly359Glu	p.G359E	ENST00000369303	NM_004440.3	359	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120269	94120269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	238	296	1	ENST00000369303.4:c.782G>A	p.Gly261Glu	p.G261E	ENST00000369303	NM_004440.3	261	gGa/gAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450240	50450240	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	347	387	0	ENST00000331340.3:c.424G>A	p.Glu142Lys	p.E142K	ENST00000331340	NM_006060.4	142	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211104	55211104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	406	573	2	ENST00000275493.2:c.347C>T	p.Ser116Phe	p.S116F	ENST00000275493	NM_005228.3	116	tCc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242415	55242415	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	379	523	0	ENST00000275493.2:c.2185G>A	p.Gly729Arg	p.G729R	ENST00000275493	NM_005228.3	729	Gga/Aga																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38189043	38189043	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	641	754	2	ENST00000317025.8:c.971A>T	p.Glu324Val	p.E324V	ENST00000317025	NM_023034.1	324	gAa/gTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129903	69129903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	683	365	1	ENST00000288368.4:c.4657G>A	p.Gly1553Arg	p.G1553R	ENST00000288368	NM_024870.2	1553	Gga/Aga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228211	53228211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	594	362	0	ENST00000375401.3:c.2191C>T	p.Leu731Phe	p.L731F	ENST00000375401	NM_004187.3	731	Ctt/Ttt																																																																														
ATRX	546	MSKCC	GRCh37	X	76939662	76939663	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	414	357	0	ENST00000373344.5:c.1085_1086delinsTT	p.Thr362Ile	p.T362I	ENST00000373344	NM_000489.3	362	aCC/aTT																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968282	18968284	+	missense_variant	Missense_Mutation	ONP	CTC	CTC	TTT			P-0015407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	679	832	1	ENST00000262803.5:c.2122_2124delinsTTT	p.Leu708Phe	p.L708F	ENST00000262803	NM_002911.3	708	CTC/TTT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16203032	16203032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	369	658	0	ENST00000375759.3:c.740C>T	p.Ser247Leu	p.S247L	ENST00000375759	NM_015001.2	247	tCa/tTa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933436	36933436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	350	751	0	ENST00000361632.4:c.1851G>A	p.Met617Ile	p.M617I	ENST00000361632		617	atG/atA																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256556	115256556	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	293	685	0	ENST00000369535.4:c.155T>G	p.Leu52Trp	p.L52W	ENST00000369535	NM_002524.4	52	tTg/tGg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258682	115258682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	212	406	0	ENST00000369535.4:c.100C>T	p.Pro34Ser	p.P34S	ENST00000369535	NM_002524.4	34	Ccc/Tcc																																																																														
FH	2271	MSKCC	GRCh37	1	241675412	241675412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	175	471	0	ENST00000366560.3:c.410C>T	p.Pro137Leu	p.P137L	ENST00000366560	NM_000143.3	137	cCt/cTt																																																																														
TET1	80312	MSKCC	GRCh37	10	70441204	70441204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	200	665	0	ENST00000373644.4:c.4873C>T	p.Pro1625Ser	p.P1625S	ENST00000373644	NM_030625.2	1625	Cca/Tca																																																																														
TET1	80312	MSKCC	GRCh37	10	70441243	70441243	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	136	513	0	ENST00000373644.4:c.4912C>T	p.Gln1638Ter	p.Q1638*	ENST00000373644	NM_030625.2	1638	Cag/Tag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123256129	123256129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	203	742	0	ENST00000358487.5:c.1780C>T	p.Pro594Ser	p.P594S	ENST00000358487	NM_000141.4	594	Cct/Tct																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948253	71948253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	513	1029	0	ENST00000298229.2:c.2965C>T	p.Leu989Phe	p.L989F	ENST00000298229	NM_001567.3	989	Ctt/Ttt																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981755	101981756	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	298	653	2	ENST00000282441.5:c.176_177delinsAA	p.Gly59Glu	p.G59E	ENST00000282441	NM_001130145.2	59	gGG/gAA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344563	118344564	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	111	591	2	ENST00000534358.1:c.2689_2690delinsGT	p.Ser897Val	p.S897V	ENST00000534358	NM_005933.3	897	TCa/GTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373125	118373125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	161	405	0	ENST00000534358.1:c.6518C>T	p.Pro2173Leu	p.P2173L	ENST00000534358	NM_005933.3	2173	cCa/cTa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865281	57865281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	357	773	4	ENST00000228682.2:c.2758G>A	p.Ala920Thr	p.A920T	ENST00000228682	NM_005269.2	920	Gcc/Acc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109876	115109876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	440	712	1	ENST00000257566.3:c.2002G>A	p.Gly668Arg	p.G668R	ENST00000257566	NM_016569.3	668	Ggg/Agg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601298	28601298	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	230	669	1	ENST00000241453.7:c.2134A>T	p.Arg712Trp	p.R712W	ENST00000241453	NM_004119.2	712	Agg/Tgg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041266	29041267	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	154	466	1	ENST00000282397.4:c.162-1_162delinsAA		p.X54_splice	ENST00000282397	NM_002019.4	54																																																																															
BRCA2	675	MSKCC	GRCh37	13	32920978	32920978	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	145	500	2	ENST00000380152.3:c.6952C>T	p.Arg2318Ter	p.R2318*	ENST00000380152		2318	Cga/Tga																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609774	81609774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	136	416	0	ENST00000298171.2:c.1372T>C	p.Phe458Leu	p.F458L	ENST00000298171	NM_000369.2	458	Ttt/Ctt																																																																														
MGA	23269	MSKCC	GRCh37	15	42042616	42042616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	144	626	0	ENST00000219905.7:c.6811C>T	p.Gln2271Ter	p.Q2271*	ENST00000219905	NM_001164273.1	2271	Cag/Tag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472466	88472466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	191	685	0	ENST00000360948.2:c.2089G>A	p.Asp697Asn	p.D697N	ENST00000360948	NM_001012338.2	697	Gac/Aac																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130373	2130373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	334	647	0	ENST00000219476.3:c.3605C>T	p.Pro1202Leu	p.P1202L	ENST00000219476	NM_000548.3	1202	cCc/cTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778852	3778852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	162	710	2	ENST00000262367.5:c.6196G>A	p.Ala2066Thr	p.A2066T	ENST00000262367	NM_004380.2	2066	Gct/Act																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857097	9857097	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	156	340	0	ENST00000330684.3:c.4304A>G	p.Lys1435Arg	p.K1435R	ENST00000330684	NM_001134407.1	1435	aAg/aGg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857788	9857788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	283	494	1	ENST00000330684.3:c.3613G>A	p.Glu1205Lys	p.E1205K	ENST00000330684	NM_001134407.1	1205	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943643	9943643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	370	610	1	ENST00000330684.3:c.1298C>T	p.Thr433Ile	p.T433I	ENST00000330684	NM_001134407.1	433	aCc/aTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984911	9984911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	343	683	0	ENST00000330684.3:c.1054G>A	p.Glu352Lys	p.E352K	ENST00000330684	NM_001134407.1	352	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273921	10273921	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	390	881	0	ENST00000330684.3:c.348C>G	p.Ile116Met	p.I116M	ENST00000330684	NM_001134407.1	116	atC/atG																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029456	14029456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	281	507	0	ENST00000311895.7:c.1667C>T	p.Pro556Leu	p.P556L	ENST00000311895	NM_005236.2	556	cCg/cTg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647500	23647500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	273	661	1	ENST00000261584.4:c.367G>A	p.Asp123Asn	p.D123N	ENST00000261584	NM_024675.3	123	Gac/Aac																																																																														
CDH1	999	MSKCC	GRCh37	16	68845688	68845688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	480	811	0	ENST00000261769.5:c.934C>T	p.Pro312Ser	p.P312S	ENST00000261769	NM_004360.3	312	Cct/Tct																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346963	89346963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	206	409	0	ENST00000301030.4:c.5987C>T	p.Pro1996Leu	p.P1996L	ENST00000301030	NM_001256183.1	1996	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	385	638	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																														
NF1	4763	MSKCC	GRCh37	17	29576010	29576010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	248	458	1	ENST00000358273.4:c.3983C>T	p.Pro1328Leu	p.P1328L	ENST00000358273	NM_001042492.2	1328	cCa/cTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29592318	29592318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	197	488	0	ENST00000358273.4:c.4796C>T	p.Ser1599Phe	p.S1599F	ENST00000358273	NM_001042492.2	1599	tCc/tTc																																																																														
CD79B	974	MSKCC	GRCh37	17	62006651	62006651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	203	725	1	ENST00000392795.3:c.628G>A	p.Asp210Asn	p.D210N	ENST00000392795	NM_001039933.1	210	Gac/Aac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604750	48604750	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	178	592	1	ENST00000342988.3:c.1572G>A	p.Trp524Ter	p.W524*	ENST00000342988	NM_005359.5	524	tgG/tgA																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4090613	4090613	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	345	540	0	ENST00000262948.5:c.1186A>T	p.Thr396Ser	p.T396S	ENST00000262948	NM_030662.3	396	Acg/Tcg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271823	15271823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	392	846	1	ENST00000263388.2:c.6616G>A	p.Glu2206Lys	p.E2206K	ENST00000263388	NM_000435.2	2206	Gag/Aag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353893	15353893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	302	654	1	ENST00000263377.2:c.2987C>T	p.Pro996Leu	p.P996L	ENST00000263377	NM_058243.2	996	cCc/cTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375489	15375489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	470	827	0	ENST00000263377.2:c.938C>T	p.Pro313Leu	p.P313L	ENST00000263377	NM_058243.2	313	cCc/cTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224250	36224250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	380	710	0	ENST00000222270.7:c.6800G>A	p.Gly2267Glu	p.G2267E	ENST00000222270	NM_014727.1	2267	gGg/gAg																																																																														
ALK	238	MSKCC	GRCh37	2	29449925	29449925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	587	1106	1	ENST00000389048.3:c.2930G>A	p.Gly977Glu	p.G977E	ENST00000389048	NM_004304.4	977	gGg/gAg																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47596663	47596663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	255	474	0	ENST00000263735.4:c.19C>T	p.Leu7Phe	p.L7F	ENST00000263735	NM_002354.2	7	Ctc/Ttc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033348	48033348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	197	510	0	ENST00000234420.5:c.3652G>A	p.Gly1218Ser	p.G1218S	ENST00000234420	NM_000179.2	1218	Ggt/Agt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190708778	190708778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	268	603	0	ENST00000441310.2:c.671C>T	p.Ser224Phe	p.S224F	ENST00000441310	NM_000534.4	224	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285273	212285273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	199	605	0	ENST00000342788.4:c.3028G>A	p.Glu1010Lys	p.E1010K	ENST00000342788	NM_005235.2	1010	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295732	212295732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	259	644	0	ENST00000342788.4:c.2581G>A	p.Asp861Asn	p.D861N	ENST00000342788	NM_005235.2	861	Gat/Aat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566827	212566827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	185	365	0	ENST00000342788.4:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000342788	NM_005235.2	452	Gaa/Aaa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561085	9561085	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	182	378	0	ENST00000353224.5:c.697C>T	p.Gln233Ter	p.Q233*	ENST00000353224	NM_177990.2	233	Caa/Taa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561504	9561504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	315	570	0	ENST00000353224.5:c.278C>T	p.Ser93Leu	p.S93L	ENST00000353224	NM_177990.2	93	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076868	41076868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	206	538	0	ENST00000373198.4:c.1552C>T	p.Leu518Phe	p.L518F	ENST00000373198	NM_133170.3	518	Ctc/Ttc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100959	41100959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	280	605	0	ENST00000373198.4:c.1397A>G	p.Asn466Ser	p.N466S	ENST00000373198	NM_133170.3	466	aAc/aGc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44514870	44514870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	292	546	0	ENST00000291552.4:c.377C>T	p.Ala126Val	p.A126V	ENST00000291552	NM_006758.2	126	gCt/gTt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37042498	37042498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	290	689	0	ENST00000231790.2:c.260C>T	p.Ser87Phe	p.S87F	ENST00000231790	NM_000249.3	87	tCc/tTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275658	41275658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	298	512	0	ENST00000349496.5:c.1553C>T	p.Ala518Val	p.A518V	ENST00000349496	NM_001904.3	518	gCc/gTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164529	47164529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	175	503	0	ENST00000409792.3:c.1597C>T	p.Pro533Ser	p.P533S	ENST00000409792	NM_014159.6	533	Ccc/Tcc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164823	47164823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	204	390	2	ENST00000409792.3:c.1303C>T	p.His435Tyr	p.H435Y	ENST00000409792	NM_014159.6	435	Cat/Tat																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898764	134898764	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185655852		P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	216	432	0	ENST00000398015.3:c.1822C>T	p.Arg608Trp	p.R608W	ENST00000398015	NM_004441.4	608	Cgg/Tgg																																																																														
TP63	8626	MSKCC	GRCh37	3	189455608	189455608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	321	758	2	ENST00000264731.3:c.142G>A	p.Glu48Lys	p.E48K	ENST00000264731	NM_003722.4	48	Gaa/Aaa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902463	1902463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	413	706	0	ENST00000382891.5:c.82C>T	p.Leu28Phe	p.L28F	ENST00000382891	NM_133335.3	28	Ctc/Ttc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902725	1902725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	458	897	0	ENST00000382891.5:c.344C>T	p.Thr115Ile	p.T115I	ENST00000382891	NM_133335.3	115	aCc/aTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139853	55139853	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	302	440	0	ENST00000257290.5:c.1514A>G	p.Asn505Ser	p.N505S	ENST00000257290	NM_006206.4	505	aAt/aGt																																																																														
KDR	3791	MSKCC	GRCh37	4	55964429	55964429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	212	547	0	ENST00000263923.4:c.2384G>A	p.Gly795Glu	p.G795E	ENST00000263923	NM_002253.2	795	gGg/gAg																																																																														
SDHA	6389	MSKCC	GRCh37	5	224614	224615	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	134	394	3	ENST00000264932.6:c.290_291delinsAA	p.Arg97Lys	p.R97K	ENST00000264932	NM_004168.2	97	aGG/aAA																																																																														
TERT	7015	MSKCC	GRCh37	5	1293875	1293875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	512	1031	0	ENST00000310581.5:c.1126C>T	p.Pro376Ser	p.P376S	ENST00000310581	NM_198253.2	376	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295230	1295230	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	159	554	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	290	646	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35873748	35873748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	120	399	0	ENST00000303115.3:c.704C>T	p.Ser235Leu	p.S235L	ENST00000303115	NM_002185.3	235	tCa/tTa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38959932	38959932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	85	354	0	ENST00000357387.3:c.2000C>T	p.Ser667Phe	p.S667F	ENST00000357387	NM_152756.3	667	tCt/tTt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720994	176720994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	149	598	2	ENST00000439151.2:c.6625G>A	p.Gly2209Arg	p.G2209R	ENST00000439151	NM_022455.4	2209	Ggg/Agg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057759	180057759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	297	536	0	ENST00000261937.6:c.196G>A	p.Glu66Lys	p.E66K	ENST00000261937	NM_182925.4	66	Gag/Aag																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778167	27778167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	246	549	0	ENST00000369163.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000369163	NM_003536.2	106	Gag/Aag																																																																														
STK19	8859	MSKCC	GRCh37	6	31940127	31940127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	471	937	0	ENST00000375331.2:c.269C>T	p.Pro90Leu	p.P90L	ENST00000375331	NM_004197.1	90	cCt/cTt																																																																														
STK19	8859	MSKCC	GRCh37	6	31948532	31948532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	89	162	0	ENST00000375331.2:c.1003C>T	p.Leu335Phe	p.L335F	ENST00000375331	NM_004197.1	335	Ctc/Ttc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169171	32169171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	391	714	0	ENST00000375023.3:c.3862G>A	p.Asp1288Asn	p.D1288N	ENST00000375023	NM_004557.3	1288	Gat/Aat																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553473	106553473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	223	320	0	ENST00000369096.4:c.1438C>A	p.Gln480Lys	p.Q480K	ENST00000369096	NM_001198.3	480	Cag/Aag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152415701	152415701	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	235	453	0	ENST00000206249.3:c.1551G>A	p.Met517Ile	p.M517I	ENST00000206249	NM_000125.3	517	atG/atA																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522622	157522623	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	333	708	2	ENST00000346085.5:c.4894_4894+1delinsAA		p.X1632_splice	ENST00000346085	NM_020732.3	1632																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979468	2979468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	340	766	2	ENST00000396946.4:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000396946	NM_032415.4	260	cGg/cAg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	633	559	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
GTF2I	2969	MSKCC	GRCh37	7	74133216	74133216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	252	461	1	ENST00000324896.4:c.899C>T	p.Pro300Leu	p.P300L	ENST00000324896	NM_032999.3	300	cCt/cTt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545813	106545813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	177	509	1	ENST00000359195.3:c.3290G>A	p.Gly1097Glu	p.G1097E	ENST00000359195	NM_002649.2	1097	gGa/gAa																																																																														
NBN	4683	MSKCC	GRCh37	8	90983463	90983463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	91	471	0	ENST00000265433.3:c.640G>A	p.Gly214Arg	p.G214R	ENST00000265433	NM_002485.4	214	Gga/Aga																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737543	145737543	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	343	698	0	ENST00000428558.2:c.3220T>G	p.Phe1074Val	p.F1074V	ENST00000428558	NM_004260.3	1074	Ttc/Gtc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8497265	8497265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	221	581	0	ENST00000356435.5:c.2326G>A	p.Glu776Lys	p.E776K	ENST00000356435		776	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971089	21971089	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	172	563	0	ENST00000304494.5:c.269T>C	p.Phe90Ser	p.F90S	ENST00000304494	NM_000077.4	90	tTc/tCc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971089	21971089	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	172	563	0	ENST00000304494.5:c.269T>C	p.Phe90Ser	p.F90S	ENST00000304494	NM_000077.4	90	tTc/tCc																																																																														
SYK	6850	MSKCC	GRCh37	9	93624600	93624600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	185	721	1	ENST00000375746.1:c.691G>A	p.Gly231Arg	p.G231R	ENST00000375746	NM_001174167.1	231	Gga/Aga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914651	39914651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	387	339	0	ENST00000378444.4:c.4711C>T	p.His1571Tyr	p.H1571Y	ENST00000378444	NM_001123385.1	1571	Cac/Tac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928957	44928957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	354	327	0	ENST00000377967.4:c.2057C>T	p.Pro686Leu	p.P686L	ENST00000377967	NM_021140.2	686	cCt/cTt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70982038	70982038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	399	870	0	ENST00000276594.2:c.58G>A	p.Glu20Lys	p.E20K	ENST00000276594	NM_024504.3	20	Gag/Aag																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62322295	62322295	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	394	828	4	ENST00000508582.2:c.2623G>T	p.Glu875Ter	p.E875*	ENST00000508582		875	Gag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262669	16262669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138432235		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	124	365	0	ENST00000375759.3:c.9934C>T	p.Arg3312Cys	p.R3312C	ENST00000375759	NM_015001.2	3312	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023135	27023135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	50	122	0	ENST00000324856.7:c.245delG	p.Gly82ValfsTer19	p.G82Vfs*19	ENST00000324856	NM_006015.4	81	Ggg/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	144	478	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	89	335	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	117	474	3	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156830874	156830874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	173	619	0	ENST00000524377.1:c.148T>C	p.Cys50Arg	p.C50R	ENST00000524377	NM_002529.3	50	Tgc/Cgc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193117069	193117069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	172	417	1	ENST00000367435.3:c.802C>T	p.Arg268Ter	p.R268*	ENST00000367435	NM_024529.4	268	Cga/Tga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982373	201982373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1217	167	681	1	ENST00000359651.3:c.752G>A	p.Arg251Gln	p.R251Q	ENST00000359651		251	cGa/cAa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982989	201982989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	248	791	4	ENST00000359651.3:c.838C>T	p.Arg280Trp	p.R280W	ENST00000359651		280	Cgg/Tgg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652386	206652386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	247	627	0	ENST00000367120.3:c.1093G>A	p.Val365Ile	p.V365I	ENST00000367120	NM_014002.3	365	Gtc/Atc																																																																														
FH	2271	MSKCC	GRCh37	1	241676971	241676971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	171	564	0	ENST00000366560.3:c.310G>A	p.Ala104Thr	p.A104T	ENST00000366560	NM_000143.3	104	Gct/Act																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	116	436	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717745	89717745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	179	406	0	ENST00000371953.3:c.770T>C	p.Phe257Ser	p.F257S	ENST00000371953	NM_000314.4	257	tTc/tCc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	56	360	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																														
WT1	7490	MSKCC	GRCh37	11	32417879	32417880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	142	624	1	ENST00000332351.3:c.1172dup	p.Met392HisfsTer9	p.M392Hfs*9	ENST00000332351	NM_024426.4	391	ttc/ttTc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	213	840	5	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
ATM	472	MSKCC	GRCh37	11	108098609	108098609	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	89	237	0	ENST00000278616.4:c.183delT	p.Phe61LeufsTer15	p.F61Lfs*15	ENST00000278616	NM_000051.3	60	gTt/gt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118391551	118391551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	97	414	0	ENST00000534358.1:c.11464C>T	p.Arg3822Cys	p.R3822C	ENST00000534358	NM_005933.3	3822	Cgc/Tgc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419038	419042	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTT	CTTTT	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	138	659	0	ENST00000399788.2:c.3305_3309del	p.Glu1102GlyfsTer9	p.E1102Gfs*9	ENST00000399788	NM_001042603.1	1102	gAAAAG/g																																																																														
ETV6	2120	MSKCC	GRCh37	12	12043918	12043918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	123	509	0	ENST00000396373.4:c.1297C>T	p.Arg433Cys	p.R433C	ENST00000396373	NM_001987.4	433	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	187	605	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	131	552	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243382	46243382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	30	300	0	ENST00000334344.6:c.1735A>G	p.Thr579Ala	p.T579A	ENST00000334344	NM_152641.2	579	Aca/Gca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	244	704	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	141	605	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863293	57863293	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200730656		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	124	569	1	ENST00000228682.2:c.1388G>A	p.Ser463Asn	p.S463N	ENST00000228682	NM_005269.2	463	aGt/aAt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856166	111856166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	117	540	1	ENST00000341259.2:c.217C>T	p.Arg73Cys	p.R73C	ENST00000341259	NM_005475.2	73	Cgc/Tgc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885286	111885286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	147	429	2	ENST00000341259.2:c.1174C>T	p.Arg392Trp	p.R392W	ENST00000341259	NM_005475.2	392	Cgg/Tgg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120535147	120535147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	166	474	0	ENST00000229340.5:c.508C>T	p.Arg170Ter	p.R170*	ENST00000229340	NM_006861.6	170	Cga/Tga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557912	21557912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	178	414	1	ENST00000382592.4:c.1933C>T	p.Arg645Trp	p.R645W	ENST00000382592	NM_014572.2	645	Cgg/Tgg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134628	41134628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	391	382	1	ENST00000379561.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000379561	NM_002015.3	334	Gaa/Aaa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068315	30068315	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141649026		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	83	331	0	ENST00000331968.5:c.2084G>A	p.Arg695Gln	p.R695Q	ENST00000331968	NM_002742.2	695	cGg/cAg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30396643	30396643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	36	147	0	ENST00000331968.5:c.76G>A	p.Ala26Thr	p.A26T	ENST00000331968	NM_002742.2	26	Gca/Aca																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610503	81610503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137908024		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	77	397	0	ENST00000298171.2:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000298171	NM_000369.2	701	Cgc/Tgc																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022990	33022990	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	152	458	1	ENST00000300177.4:c.104delC	p.Pro35ArgfsTer49	p.P35Rfs*49	ENST00000300177	NM_001191322.1	33	atC/at																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631917	90631918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	149	729	5	ENST00000330062.3:c.435dupG	p.Thr146AspfsTer126	p.T146Dfs*126	ENST00000330062	NM_002168.2	145	-/G																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478614	99478614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	131	506	0	ENST00000268035.6:c.3256G>A	p.Asp1086Asn	p.D1086N	ENST00000268035	NM_000875.3	1086	Gat/Aat																																																																														
AXIN1	8312	MSKCC	GRCh37	16	338166	338166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	194	711	0	ENST00000262320.3:c.2545G>A	p.Val849Ile	p.V849I	ENST00000262320	NM_003502.3	849	Gtc/Atc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354437	354437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	127	623	0	ENST00000262320.3:c.1121C>T	p.Thr374Met	p.T374M	ENST00000262320	NM_003502.3	374	aCg/aTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129377	2129377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	149	598	1	ENST00000219476.3:c.3232C>T	p.Arg1078Trp	p.R1078W	ENST00000219476	NM_000548.3	1078	Cgg/Tgg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646322	3646322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	240	772	0	ENST00000294008.3:c.1756G>A	p.Ala586Thr	p.A586T	ENST00000294008	NM_032444.2	586	Gct/Act																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14014191	14014191	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	124	369	0	ENST00000311895.7:c.169T>A	p.Cys57Ser	p.C57S	ENST00000311895	NM_005236.2	57	Tgc/Agc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23649272	23649272	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs202194596		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	103	309	0	ENST00000261584.4:c.110G>A	p.Arg37His	p.R37H	ENST00000261584	NM_024675.3	37	cGt/cAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992437	72992437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	230	828	1	ENST00000268489.5:c.1608G>A	p.Met536Ile	p.M536I	ENST00000268489	NM_006885.3	536	atG/atA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993143	72993143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	252	723	1	ENST00000268489.5:c.902C>T	p.Ala301Val	p.A301V	ENST00000268489	NM_006885.3	301	gCg/gTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81891957	81891957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	104	429	0	ENST00000359376.3:c.427G>A	p.Glu143Lys	p.E143K	ENST00000359376	NM_002661.3	143	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346792	89346792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	117	314	1	ENST00000301030.4:c.6158C>T	p.Ala2053Val	p.A2053V	ENST00000301030	NM_001256183.1	2053	gCg/gTg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30321689	30321689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	220	712	0	ENST00000322652.5:c.1544G>A	p.Ser515Asn	p.S515N	ENST00000322652	NM_015355.2	515	aGt/aAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	166	658	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489466	40489466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	200	515	1	ENST00000264657.5:c.784C>T	p.Arg262Trp	p.R262W	ENST00000264657	NM_139276.2	262	Cgg/Tgg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40497641	40497641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	215	553	0	ENST00000264657.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000264657	NM_139276.2	103	cGg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	478	596	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CD79B	974	MSKCC	GRCh37	17	62007455	62007455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	95	409	0	ENST00000392795.3:c.412G>A	p.Gly138Ser	p.G138S	ENST00000392795	NM_001039933.1	138	Ggc/Agc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132522	11132522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	201	616	1	ENST00000344626.4:c.2738C>T	p.Pro913Leu	p.P913L	ENST00000344626	NM_003072.3	913	cCg/cTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11135088	11135088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	232	752	0	ENST00000344626.4:c.3055A>G	p.Thr1019Ala	p.T1019A	ENST00000344626	NM_003072.3	1019	Act/Gct																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349666	15349666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200976853		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	164	491	0	ENST00000263377.2:c.3908C>T	p.Ala1303Val	p.A1303V	ENST00000263377	NM_058243.2	1303	gCg/gTg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18971636	18971636	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	193	548	0	ENST00000262803.5:c.2302A>G	p.Thr768Ala	p.T768A	ENST00000262803	NM_002911.3	768	Acc/Gcc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19258521	19258521	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	213	751	0	ENST00000162023.5:c.379C>T	p.Arg127Ter	p.R127*	ENST00000162023		127	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211460	36211460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	278	897	2	ENST00000222270.7:c.1211C>T	p.Pro404Leu	p.P404L	ENST00000222270	NM_014727.1	404	cCg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222828	36222828	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	234	752	4	ENST00000222270.7:c.5462del	p.Pro1821HisfsTer74	p.P1821Hfs*74	ENST00000222270	NM_014727.1	1819	gaC/ga																																																																														
ERF	2077	MSKCC	GRCh37	19	42752691	42752691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	223	600	1	ENST00000222329.4:c.1573C>A	p.Leu525Ile	p.L525I	ENST00000222329	NM_006494.2	525	Ctc/Atc																																																																														
ERF	2077	MSKCC	GRCh37	19	42754595	42754595	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	176	646	2	ENST00000222329.4:c.145C>T	p.Gln49Ter	p.Q49*	ENST00000222329	NM_006494.2	49	Cag/Tag																																																																														
CIC	23152	MSKCC	GRCh37	19	42791513	42791513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	137	626	3	ENST00000575354.2:c.494C>T	p.Pro165Leu	p.P165L	ENST00000575354	NM_015125.3	165	cCg/cTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42792047	42792047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	123	566	0	ENST00000575354.2:c.851C>T	p.Thr284Met	p.T284M	ENST00000575354	NM_015125.3	284	aCg/aTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868341	45868341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	228	767	0	ENST00000391945.4:c.436T>C	p.Tyr146His	p.Y146H	ENST00000391945	NM_000400.3	146	Tac/Cac																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910264	50910264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	207	665	2	ENST00000440232.2:c.1519C>T	p.Arg507Cys	p.R507C	ENST00000440232	NM_002691.3	507	Cgc/Tgc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	167	550	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	233	831	7	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25536799	25536799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	226	623	3	ENST00000264709.3:c.55C>T	p.Arg19Trp	p.R19W	ENST00000264709	NM_175629.2	19	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	30143052	30143052	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	221	785	1	ENST00000389048.3:c.474del	p.Glu160ArgfsTer26	p.E160Rfs*26	ENST00000389048	NM_004304.4	158	ccC/cc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46602891	46602891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	214	630	1	ENST00000263734.3:c.949G>A	p.Val317Met	p.V317M	ENST00000263734	NM_001430.4	317	Gtg/Atg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703653	47703653	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	139	475	0	ENST00000233146.2:c.2154del	p.Gln718HisfsTer2	p.Q718Hfs*2	ENST00000233146	NM_000251.2	718	cAa/ca																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026020	48026020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	179	436	1	ENST00000234420.5:c.898C>T	p.Arg300Trp	p.R300W	ENST00000234420	NM_000179.2	300	Cgg/Tgg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	110	510	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	48	582	0	ENST00000358485.4:c.1245delT	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812259	212812259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	143	423	2	ENST00000342788.4:c.317G>A	p.Arg106His	p.R106H	ENST00000342788	NM_005235.2	106	cGt/cAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306584	41306584	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	121	654	1	ENST00000373198.4:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000373198	NM_133170.3	359	Cga/Tga																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	197	478	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42851212	42851212	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	131	368	0	ENST00000398585.3:c.684-3del		p.X228_splice	ENST00000398585	NM_001135099.1	228																																																																															
RAC2	5880	MSKCC	GRCh37	22	37627348	37627348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	309	969	0	ENST00000249071.6:c.371A>C	p.Asp124Ala	p.D124A	ENST00000249071	NM_002872.4	124	gAc/gCc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421349	12421349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	269	749	0	ENST00000287820.6:c.229C>T	p.His77Tyr	p.H77Y	ENST00000287820	NM_015869.4	77	Cat/Tat																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	153	509	2	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12632469	12632469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	127	500	0	ENST00000251849.4:c.1198A>G	p.Thr400Ala	p.T400A	ENST00000251849	NM_002880.3	400	Aca/Gca																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	140	403	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935036	49935036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	157	693	2	ENST00000296474.3:c.1963G>A	p.Val655Ile	p.V655I	ENST00000296474	NM_002447.2	655	Gtc/Atc																																																																														
MITF	4286	MSKCC	GRCh37	3	69928380	69928380	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	106	321	0	ENST00000352241.4:c.200A>G	p.Gln67Arg	p.Q67R	ENST00000352241	NM_198159.2	67	cAg/cGg																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73108281	73108281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	43	151	0	ENST00000356692.5:c.381G>T	p.Lys127Asn	p.K127N	ENST00000356692		127	aaG/aaT																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170009727	170009727	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	78	265	0	ENST00000295797.4:c.1289A>G	p.Tyr430Cys	p.Y430C	ENST00000295797	NM_002740.5	430	tAt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	149	390	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430901	181430901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	164	713	0	ENST00000325404.1:c.758del	p.Pro253LeufsTer21	p.P253Lfs*21	ENST00000325404	NM_003106.3	251	agC/ag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156664	55156664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	147	449	0	ENST00000257290.5:c.3065T>C	p.Leu1022Pro	p.L1022P	ENST00000257290	NM_006206.4	1022	cTg/cCg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	99	408	0	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	173	470	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534439	187534441	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	92	431	0	ENST00000441802.2:c.9285_9287del	p.Leu3096del	p.L3096del	ENST00000441802	NM_005245.3	3095	ctTCTc/ctc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630266	187630266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	78	535	0	ENST00000441802.2:c.716G>A	p.Ser239Asn	p.S239N	ENST00000441802	NM_005245.3	239	aGc/aAc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	243	570	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175510	112175510	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	95	353	0	ENST00000257430.4:c.4219A>G	p.Ser1407Gly	p.S1407G	ENST00000257430	NM_000038.5	1407	Agt/Ggt																																																																														
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	97	326	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048668	180048668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	206	571	3	ENST00000261937.6:c.1894C>T	p.Arg632Cys	p.R632C	ENST00000261937	NM_182925.4	632	Cgc/Tgc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800564	32800564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	156	708	1	ENST00000374899.4:c.983C>T	p.Ala328Val	p.A328V	ENST00000374899	NM_018833.2	328	gCg/gTg																																																																														
CCND3	896	MSKCC	GRCh37	6	41903706	41903706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	132	576	0	ENST00000372991.4:c.851C>T	p.Pro284Leu	p.P284L	ENST00000372991	NM_001760.3	284	cCt/cTt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967244	93967244	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	47	284	0	ENST00000369303.4:c.2111-3del		p.X704_splice	ENST00000369303	NM_004440.3	704																																																																															
ROS1	6098	MSKCC	GRCh37	6	117706974	117706974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	164	589	0	ENST00000368508.3:c.2176G>A	p.Val726Ile	p.V726I	ENST00000368508	NM_002944.2	726	Gtt/Att																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129201	152129201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	213	653	0	ENST00000206249.3:c.154T>C	p.Tyr52His	p.Y52H	ENST00000206249	NM_000125.3	52	Tac/Cac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157510806	157510806	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	129	505	2	ENST00000346085.5:c.3586del	p.Gln1196SerfsTer15	p.Q1196Sfs*15	ENST00000346085	NM_020732.3	1194	aCc/ac																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	121	357	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
SMO	6608	MSKCC	GRCh37	7	128851987	128851987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	124	660	1	ENST00000249373.3:c.2059C>T	p.Pro687Ser	p.P687S	ENST00000249373	NM_005631.4	687	Ccg/Tcg																																																																														
RHEB	6009	MSKCC	GRCh37	7	151168649	151168649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	194	516	0	ENST00000262187.5:c.318G>T	p.Met106Ile	p.M106I	ENST00000262187	NM_005614.3	106	atG/atT																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285869	38285869	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	195	646	0	ENST00000425967.3:c.541+1G>A		p.X181_splice	ENST00000425967	NM_001174067.1	181																																																																															
PRDM14	63978	MSKCC	GRCh37	8	70982031	70982031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	207	717	0	ENST00000276594.2:c.65G>C	p.Ser22Thr	p.S22T	ENST00000276594	NM_024504.3	22	aGc/aCc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878926	117878926	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	127	422	0	ENST00000297338.2:c.43G>C	p.Ala15Pro	p.A15P	ENST00000297338	NM_006265.2	15	Gcc/Ccc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737415	145737415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	170	616	0	ENST00000428558.2:c.3272A>G	p.Gln1091Arg	p.Q1091R	ENST00000428558	NM_004260.3	1091	cAg/cGg																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006224	22006224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	151	508	0	ENST00000276925.6:c.179G>A	p.Arg60His	p.R60H	ENST00000276925	NM_004936.3	60	cGc/cAc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87322805	87322805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	103	477	2	ENST00000277120.3:c.406C>T	p.Arg136Cys	p.R136C	ENST00000277120		136	Cgt/Tgt																																																																														
SYK	6850	MSKCC	GRCh37	9	93624552	93624552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	144	623	0	ENST00000375746.1:c.643C>T	p.His215Tyr	p.H215Y	ENST00000375746	NM_001174167.1	215	Cac/Tac																																																																														
SYK	6850	MSKCC	GRCh37	9	93624623	93624623	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	138	434	2	ENST00000375746.1:c.714G>A	p.Trp238Ter	p.W238*	ENST00000375746	NM_001174167.1	238	tgG/tgA																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900239	101900239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	132	492	0	ENST00000374994.4:c.673C>T	p.Arg225Trp	p.R225W	ENST00000374994	NM_004612.2	225	Cgg/Tgg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137293514	137293514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55836231		P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	203	773	0	ENST00000481739.1:c.65C>T	p.Pro22Leu	p.P22L	ENST00000481739	NM_002957.4	22	cCg/cTg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	180	306	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228063	53228063	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	200	320	0	ENST00000375401.3:c.2251T>C	p.Tyr751His	p.Y751H	ENST00000375401	NM_004187.3	751	Tat/Cat																																																																														
MPL	4352	MSKCC	GRCh37	1	43805076	43805076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	300	787	1	ENST00000372470.3:c.526C>T	p.Pro176Ser	p.P176S	ENST00000372470	NM_005373.2	176	Ccc/Tcc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	520	477	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850751	63850751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	223	538	0	ENST00000279873.7:c.1529C>T	p.Ser510Phe	p.S510F	ENST00000279873	NM_032199.2	510	tCc/tTc																																																																														
WT1	7490	MSKCC	GRCh37	11	32421568	32421568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	250	607	0	ENST00000332351.3:c.1024G>A	p.Asp342Asn	p.D342N	ENST00000332351	NM_024426.4	342	Gat/Aat																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137784	64137784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	922	982	0	ENST00000334205.4:c.1885C>T	p.Arg629Cys	p.R629C	ENST00000334205	NM_003942.2	629	Cgc/Tgc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572003	64572003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	852	822	1	ENST00000337652.1:c.1651C>T	p.Pro551Ser	p.P551S	ENST00000337652	NM_130803.2	551	Ccg/Tcg																																																																														
PGR	5241	MSKCC	GRCh37	11	100999777	100999777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	47	673	0	ENST00000325455.5:c.25C>T	p.Pro9Ser	p.P9S	ENST00000325455	NM_001202474.3	9	Ccc/Tcc																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945093	31945093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	334	481	0	ENST00000340398.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000340398	NM_001013699.2	3	cGa/cAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211590	46211590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	363	330	0	ENST00000334344.6:c.556G>A	p.Glu186Lys	p.E186K	ENST00000334344	NM_152641.2	186	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28959151	28959151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	303	359	1	ENST00000282397.4:c.1987C>T	p.Leu663Phe	p.L663F	ENST00000282397	NM_002019.4	663	Ctc/Ttc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133907	41133907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	298	274	0	ENST00000379561.5:c.1721C>T	p.Ala574Val	p.A574V	ENST00000379561	NM_002015.3	574	gCc/gTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857020	9857020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	160	258	0	ENST00000330684.3:c.4381G>A	p.Glu1461Lys	p.E1461K	ENST00000330684	NM_001134407.1	1461	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992340	72992340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148894513		P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1254	384	1021	0	ENST00000268489.5:c.1705C>T	p.Arg569Cys	p.R569C	ENST00000268489	NM_006885.3	569	Cgt/Tgt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81939102	81939102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	409	517	0	ENST00000359376.3:c.1457C>T	p.Ser486Phe	p.S486F	ENST00000359376	NM_002661.3	486	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577052	7577055	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GAGG	GAGG	TA			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	659	726	2	ENST00000269305.4:c.883_886delinsTA	p.Pro295Ter	p.P295*	ENST00000269305	NM_001126112.2	295	CCTCac/TAac																																																																														
NF1	4763	MSKCC	GRCh37	17	29556463	29556463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	186	329	0	ENST00000358273.4:c.2835del	p.Phe945LeufsTer9	p.F945Lfs*9	ENST00000358273	NM_001042492.2	944	Ttt/tt																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	458	542	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29677308	29677308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	243	358	0	ENST00000358273.4:c.7429C>T	p.Pro2477Ser	p.P2477S	ENST00000358273	NM_001042492.2	2477	Ccc/Tcc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686902	37686902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	481	536	0	ENST00000447079.4:c.3806C>T	p.Pro1269Leu	p.P1269L	ENST00000447079	NM_015083.1	1269	cCc/cTc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936856	78936856	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	320	412	0	ENST00000306801.3:c.3938G>A	p.Trp1313Ter	p.W1313*	ENST00000306801	NM_020761.2	1313	tGg/tAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5219479	5219479	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	434	656	0	ENST00000357368.4:c.3766-1G>A		p.X1256_splice	ENST00000357368	NM_002850.3	1256																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5222732	5222732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	595	717	0	ENST00000357368.4:c.3071C>T	p.Pro1024Leu	p.P1024L	ENST00000357368	NM_002850.3	1024	cCc/cTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7184562	7184562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	418	502	2	ENST00000302850.5:c.739G>A	p.Asp247Asn	p.D247N	ENST00000302850	NM_000208.2	247	Gac/Aac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145669	11145669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	588	848	0	ENST00000344626.4:c.4031C>T	p.Pro1344Leu	p.P1344L	ENST00000344626	NM_003072.3	1344	cCc/cTc																																																																														
AKT2	208	MSKCC	GRCh37	19	40741243	40741243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	569	689	1	ENST00000392038.2:c.1190C>T	p.Pro397Leu	p.P397L	ENST00000392038	NM_001626.4	397	cCc/cTc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966664	25966664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	492	508	0	ENST00000435504.4:c.2542C>T	p.His848Tyr	p.H848Y	ENST00000435504		848	Cat/Tat																																																																														
ALK	238	MSKCC	GRCh37	2	29416689	29416689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	330	397	0	ENST00000389048.3:c.4264C>T	p.Pro1422Ser	p.P1422S	ENST00000389048	NM_004304.4	1422	Cct/Tct																																																																														
ACVR1	90	MSKCC	GRCh37	2	158626984	158626985	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	363	517	1	ENST00000263640.3:c.685_686delinsAA	p.Gly229Lys	p.G229K	ENST00000263640	NM_001105.4	229	GGg/AAg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190660562	190660562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	348	389	0	ENST00000441310.2:c.200C>T	p.Pro67Leu	p.P67L	ENST00000441310	NM_000534.4	67	cCt/cTt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190732614	190732614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	427	494	0	ENST00000441310.2:c.2432C>T	p.Pro811Leu	p.P811L	ENST00000441310	NM_000534.4	811	cCt/cTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251853	212251854	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	230	335	0	ENST00000342788.4:c.3205_3206delinsAA	p.Gly1069Lys	p.G1069K	ENST00000342788	NM_005235.2	1069	GGa/AAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566709	212566709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	129	282	0	ENST00000342788.4:c.1472G>A	p.Arg491Lys	p.R491K	ENST00000342788	NM_005235.2	491	aGa/aAa																																																																														
INHA	3623	MSKCC	GRCh37	2	220439805	220439805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	516	616	0	ENST00000243786.2:c.658C>T	p.Arg220Trp	p.R220W	ENST00000243786	NM_002191.3	220	Cgg/Tgg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793371	242793372	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	623	952	1	ENST00000334409.5:c.705_706delinsAC	p.Glu236Gln	p.E236Q	ENST00000334409	NM_005018.2	235	ccGGag/ccACag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710603	40710603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	269	688	1	ENST00000373198.4:c.4248G>A	p.Met1416Ile	p.M1416I	ENST00000373198	NM_133170.3	1416	atG/atA																																																																														
ERG	2078	MSKCC	GRCh37	21	39795392	39795392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	295	742	0	ENST00000288319.7:c.328G>A	p.Glu110Lys	p.E110K	ENST00000288319	NM_182918.3	110	Gag/Aag																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656750	45656750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	229	583	0	ENST00000407780.3:c.406G>A	p.Ala136Thr	p.A136T	ENST00000407780	NM_001283052.1	136	Gca/Aca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTTCAGAAATACTTT			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	118	452	0	ENST00000394830.3:c.3564_3565insAAAGTATTTCTGAAAA	p.Glu1189LysfsTer11	p.E1189Kfs*11	ENST00000394830	NM_018313.4	1188	-/AAAGTATTTCTGAAAA																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52676009	52676009	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	297	787	0	ENST00000394830.3:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000394830	NM_018313.4	350	Caa/Taa																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119721033	119721033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	269	514	0	ENST00000316626.5:c.142C>T	p.Pro48Ser	p.P48S	ENST00000316626		48	Cca/Tca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921563	178921563	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	115	262	0	ENST00000263967.3:c.1045C>T	p.Arg349Ter	p.R349*	ENST00000263967	NM_006218.2	349	Cga/Tga																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198228	185198228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	249	534	1	ENST00000265026.3:c.2710G>A	p.Asp904Asn	p.D904N	ENST00000265026	NM_004721.4	904	Gat/Aat																																																																														
TP63	8626	MSKCC	GRCh37	3	189612176	189612176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	260	583	0	ENST00000264731.3:c.1928G>A	p.Arg643Gln	p.R643Q	ENST00000264731	NM_003722.4	643	cGa/cAa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902520	1902520	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	263	662	0	ENST00000382891.5:c.139T>C	p.Phe47Leu	p.F47L	ENST00000382891	NM_133335.3	47	Ttc/Ctc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1961207	1961207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	189	463	0	ENST00000382891.5:c.2995C>T	p.Pro999Ser	p.P999S	ENST00000382891	NM_133335.3	999	Cct/Tct																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139865	55139865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	179	421	0	ENST00000257290.5:c.1526C>T	p.Ala509Val	p.A509V	ENST00000257290	NM_006206.4	509	gCt/gTt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55153692	55153692	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	206	486	1	ENST00000257290.5:c.2658G>A	p.Trp886Ter	p.W886*	ENST00000257290	NM_006206.4	886	tgG/tgA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161408	55161410	+	missense_variant	Missense_Mutation	ONP	CTT	CTT	TTC			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	188	493	0	ENST00000257290.5:c.3239_3241delinsTTC	p.Ser1080_Ser1081delinsPhePro	p.S1080_S1081delinsFP	ENST00000257290	NM_006206.4	1080	tCTTca/tTTCca																																																																														
TET2	54790	MSKCC	GRCh37	4	106193820	106193820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	159	421	0	ENST00000380013.4:c.4282G>A	p.Glu1428Lys	p.E1428K	ENST00000380013	NM_001127208.2	1428	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245341	153245341	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	201	487	1	ENST00000281708.4:c.1850T>A	p.Leu617Ter	p.L617*	ENST00000281708	NM_033632.3	617	tTg/tAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521300	187521300	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	280	724	0	ENST00000441802.2:c.11855T>G	p.Phe3952Cys	p.F3952C	ENST00000441802	NM_005245.3	3952	tTt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1260656	1260656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	292	785	1	ENST00000310581.5:c.2903G>A	p.Arg968Lys	p.R968K	ENST00000310581	NM_198253.2	968	aGg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295204	1295204	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs2735943		P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	146	462	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	170	496	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876352	35876352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	243	557	0	ENST00000303115.3:c.1144C>T	p.Leu382Phe	p.L382F	ENST00000303115	NM_002185.3	382	Ctc/Ttc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576482	67576482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	186	413	0	ENST00000274335.5:c.761C>T	p.Ser254Phe	p.S254F	ENST00000274335		254	tCc/tTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515196	149515197	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	292	779	2	ENST00000261799.4:c.285_286delinsAA	p.Gly96Arg	p.G96R	ENST00000261799	NM_002609.3	95	acGGga/acAAga																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518103	176518103	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	213	617	0	ENST00000292408.4:c.601C>T	p.Arg201Trp	p.R201W	ENST00000292408	NM_213647.1	201	Cgg/Tgg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665454	176665454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	185	399	1	ENST00000439151.2:c.4138G>A	p.Glu1380Lys	p.E1380K	ENST00000439151	NM_022455.4	1380	Gaa/Aaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176715855	176715855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	267	604	0	ENST00000439151.2:c.6187C>T	p.Leu2063Phe	p.L2063F	ENST00000439151	NM_022455.4	2063	Ctt/Ttt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721567	176721567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	245	682	0	ENST00000439151.2:c.7198C>T	p.Pro2400Ser	p.P2400S	ENST00000439151	NM_022455.4	2400	Ccc/Tcc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056796	180056796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	327	757	3	ENST00000261937.6:c.716C>T	p.Ser239Leu	p.S239L	ENST00000261937	NM_182925.4	239	tCg/tTg																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271372	26271372	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	365	372	0	ENST00000305910.3:c.241A>C	p.Thr81Pro	p.T81P	ENST00000305910	NM_003534.2	81	Aca/Cca																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672381	30672381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	358	423	0	ENST00000376406.3:c.4579C>T	p.Pro1527Ser	p.P1527S	ENST00000376406	NM_014641.2	1527	Cct/Tct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180376	32180376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	287	701	0	ENST00000375023.3:c.2555C>T	p.Pro852Leu	p.P852L	ENST00000375023	NM_004557.3	852	cCc/cTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185817	32185817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	281	776	0	ENST00000375023.3:c.1579G>A	p.Asp527Asn	p.D527N	ENST00000375023	NM_004557.3	527	Gat/Aat																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536140	106536140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	342	306	0	ENST00000369096.4:c.107C>T	p.Thr36Ile	p.T36I	ENST00000369096	NM_001198.3	36	aCc/aTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609906	117609906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	500	544	0	ENST00000368508.3:c.6793G>A	p.Glu2265Lys	p.E2265K	ENST00000368508	NM_002944.2	2265	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641177	117641177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	268	736	0	ENST00000368508.3:c.5794G>A	p.Glu1932Lys	p.E1932K	ENST00000368508	NM_002944.2	1932	Gag/Aag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662759	117662759	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141448347		P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	280	294	0	ENST00000368508.3:c.4706G>A	p.Arg1569Gln	p.R1569Q	ENST00000368508	NM_002944.2	1569	cGg/cAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677934	117677934	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	470	455	1	ENST00000368508.3:c.3999A>T	p.Glu1333Asp	p.E1333D	ENST00000368508	NM_002944.2	1333	gaA/gaT																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467675	50467675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759124417		P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	507	689	0	ENST00000331340.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000331340	NM_006060.4	304	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468099	50468099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	341	415	1	ENST00000331340.3:c.1334C>T	p.Ser445Leu	p.S445L	ENST00000331340	NM_006060.4	445	tCg/tTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515195	106515195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	440	548	0	ENST00000359195.3:c.2338C>T	p.Pro780Ser	p.P780S	ENST00000359195	NM_002649.2	780	Ccc/Tcc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523546	106523546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	540	451	0	ENST00000359195.3:c.2698G>A	p.Gly900Arg	p.G900R	ENST00000359195	NM_002649.2	900	Gga/Aga																																																																														
MET	4233	MSKCC	GRCh37	7	116436159	116436159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	411	360	0	ENST00000397752.3:c.4154C>T	p.Ser1385Phe	p.S1385F	ENST00000397752	NM_000245.2	1385	tCc/tTc																																																																														
LYN	4067	MSKCC	GRCh37	8	56863023	56863023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	216	497	0	ENST00000519728.1:c.290G>A	p.Gly97Glu	p.G97E	ENST00000519728	NM_002350.3	97	gGa/gAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486242	8486242	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	317	387	0	ENST00000356435.5:c.2575A>C	p.Lys859Gln	p.K859Q	ENST00000356435		859	Aaa/Caa																																																																														
FANCC	2176	MSKCC	GRCh37	9	97912316	97912316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	476	563	0	ENST00000289081.3:c.575C>T	p.Thr192Ile	p.T192I	ENST00000289081	NM_000136.2	192	aCc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	116	434	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	G			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	180	297	1	ENST00000329236.7:c.201+1688T>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																
BAP1	8314	MSKCC	GRCh37	3	52440379	52440379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	180	320	1	ENST00000460680.1:c.673G>A	p.Asp225Asn	p.D225N	ENST00000460680	NM_004656.3	225	Gac/Aac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270177	66270177	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	36	322	0	ENST00000273854.3:c.1705C>T	p.Gln569Ter	p.Q569*	ENST00000273854	NM_004439.5	569	Caa/Taa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115262336	115262336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	88	402	0	ENST00000438362.2:c.2218G>A	p.Asp740Asn	p.D740N	ENST00000438362	NM_001242891.1	740	Gat/Aat																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651642	206651642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1521	130	742	0	ENST00000367120.3:c.952C>A	p.Gln318Lys	p.Q318K	ENST00000367120	NM_014002.3	318	Cag/Aag																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741925	17741925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	46	185	0	ENST00000250003.3:c.596C>T	p.Ala199Val	p.A199V	ENST00000250003	NM_002478.4	199	gCg/gTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132921	64132922	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	223	575	0	ENST00000334205.4:c.1060dup	p.Arg354ProfsTer16	p.R354Pfs*16	ENST00000334205	NM_003942.2	352	gac/gaCc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784063	120784064	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	133	771	3	ENST00000257552.2:c.921_922delinsAA	p.Phe307_Leu308delinsLeuMet	p.F307_L308delinsLM	ENST00000257552	NM_002442.3	307	ttCCtg/ttAAtg																																																																														
STK11	6794	MSKCC	GRCh37	19	1218415	1218415	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs112675807		P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	236	524	0	ENST00000326873.7:c.291-1G>C		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610081	10610081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	248	605	0	ENST00000171111.5:c.629A>T	p.His210Leu	p.H210L	ENST00000171111	NM_203500.1	210	cAt/cTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145811	11145811	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	178	474	0	ENST00000344626.4:c.4170+3A>G		p.X1390_splice	ENST00000344626	NM_003072.3	1390																																																																															
CUL3	8452	MSKCC	GRCh37	2	225360680	225360680	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	35	261	0	ENST00000264414.4:c.1711G>C	p.Asp571His	p.D571H	ENST00000264414	NM_003590.4	571	Gat/Cat																																																																														
KIT	3815	MSKCC	GRCh37	4	55599361	55599361	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	78	341	0	ENST00000288135.5:c.2484+3G>A		p.X828_splice	ENST00000288135	NM_000222.2	828																																																																															
KDR	3791	MSKCC	GRCh37	4	55991459	55991459	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	78	510	0	ENST00000263923.4:c.2T>C	p.Met1?	p.M1?	ENST00000263923	NM_002253.2	1	aTg/aCg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149512455	149512455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	177	380	1	ENST00000261799.4:c.985G>A	p.Glu329Lys	p.E329K	ENST00000261799	NM_002609.3	329	Gag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509275	106509275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	177	437	0	ENST00000359195.3:c.1269G>T	p.Leu423Phe	p.L423F	ENST00000359195	NM_002649.2	423	ttG/ttT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520081	106520081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	78	259	0	ENST00000359195.3:c.2509G>C	p.Asp837His	p.D837H	ENST00000359195	NM_002649.2	837	Gat/Cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105511	27105511	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	134	197	0	ENST00000324856.7:c.5125-3T>C		p.X1709_splice	ENST00000324856	NM_006015.4	1709																																																																															
MPL	4352	MSKCC	GRCh37	1	43804298	43804298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	201	296	0	ENST00000372470.3:c.298G>A	p.Glu100Lys	p.E100K	ENST00000372470	NM_005373.2	100	Gaa/Aaa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100321	8100321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	188	424	1	ENST00000346208.3:c.295G>A	p.Gly99Ser	p.G99S	ENST00000346208		99	Ggc/Agc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106097	8106097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	183	293	1	ENST00000346208.3:c.917G>A	p.Arg306Lys	p.R306K	ENST00000346208		306	aGg/aAg																																																																														
RET	5979	MSKCC	GRCh37	10	43606880	43606880	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	264	485	0	ENST00000355710.3:c.1489C>T	p.Gln497Ter	p.Q497*	ENST00000355710	NM_020975.4	497	Cag/Tag																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112769112	112769112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	126	305	0	ENST00000369452.4:c.1391C>T	p.Pro464Leu	p.P464L	ENST00000369452	NM_007373.3	464	cCa/cTa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123246896	123246896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	172	303	0	ENST00000358487.5:c.2029G>A	p.Asp677Asn	p.D677N	ENST00000358487	NM_000141.4	677	Gat/Aat																																																																														
WT1	7490	MSKCC	GRCh37	11	32421568	32421568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	166	290	0	ENST00000332351.3:c.1024G>A	p.Asp342Asn	p.D342N	ENST00000332351	NM_024426.4	342	Gat/Aat																																																																														
PGR	5241	MSKCC	GRCh37	11	100933358	100933358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	171	284	0	ENST00000325455.5:c.2032G>A	p.Gly678Ser	p.G678S	ENST00000325455	NM_001202474.3	678	Ggt/Agt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344908	118344908	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	108	155	0	ENST00000534358.1:c.3034C>T	p.Gln1012Ter	p.Q1012*	ENST00000534358	NM_005933.3	1012	Cag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352643	118352643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	140	315	0	ENST00000534358.1:c.3848C>T	p.Ser1283Phe	p.S1283F	ENST00000534358	NM_005933.3	1283	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390479	118390479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	153	267	0	ENST00000534358.1:c.11293G>T	p.Gly3765Cys	p.G3765C	ENST00000534358	NM_005933.3	3765	Ggc/Tgc																																																																														
CBL	867	MSKCC	GRCh37	11	119103248	119103248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147438359		P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	148	296	0	ENST00000264033.4:c.286C>T	p.Arg96Cys	p.R96C	ENST00000264033	NM_005188.3	96	Cgt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491450	18491450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	125	279	0	ENST00000266497.5:c.1363G>A	p.Glu455Lys	p.E455K	ENST00000266497		455	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650671	18650671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	84	181	1	ENST00000266497.5:c.2882G>A	p.Gly961Glu	p.G961E	ENST00000266497		961	gGa/gAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650676	18650676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	84	181	0	ENST00000266497.5:c.2887G>A	p.Asp963Asn	p.D963N	ENST00000266497		963	Gac/Aac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246513	46246513	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	99	155	0	ENST00000334344.6:c.4607T>G	p.Val1536Gly	p.V1536G	ENST00000334344	NM_152641.2	1536	gTt/gGt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120777	115120777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	188	335	0	ENST00000257566.3:c.229C>T	p.Pro77Ser	p.P77S	ENST00000257566	NM_016569.3	77	Ccg/Tcg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120789189	120789189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	147	326	0	ENST00000257552.2:c.748C>T	p.Arg250Trp	p.R250W	ENST00000257552	NM_002442.3	250	Cgg/Tgg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28959144	28959144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	100	182	0	ENST00000282397.4:c.1994G>A	p.Arg665Gln	p.R665Q	ENST00000282397	NM_002019.4	665	cGa/cAa																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	614	480	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42005558	42005558	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	337	377	0	ENST00000219905.7:c.3294T>A	p.His1098Gln	p.H1098Q	ENST00000219905	NM_001164273.1	1098	caT/caA																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43766957	43766957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	178	158	2	ENST00000382044.4:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000382044	NM_001141980.1	365	tCa/tTa																																																																														
BLM	641	MSKCC	GRCh37	15	91312682	91312682	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	138	149	0	ENST00000355112.3:c.2421T>A	p.Phe807Leu	p.F807L	ENST00000355112	NM_000057.2	807	ttT/ttA																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99459204	99459204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	232	420	1	ENST00000268035.6:c.1840C>T	p.Pro614Ser	p.P614S	ENST00000268035	NM_000875.3	614	Ccc/Tcc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396238	396239	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	182	361	0	ENST00000262320.3:c.787_788delinsTT	p.Pro263Phe	p.P263F	ENST00000262320	NM_003502.3	263	CCc/TTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857454	9857454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	132	257	0	ENST00000330684.3:c.3947G>A	p.Arg1316Lys	p.R1316K	ENST00000330684	NM_001134407.1	1316	aGg/aAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857878	9857878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	122	298	1	ENST00000330684.3:c.3523G>A	p.Glu1175Lys	p.E1175K	ENST00000330684	NM_001134407.1	1175	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892205	9892205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	177	335	0	ENST00000330684.3:c.2285G>A	p.Gly762Glu	p.G762E	ENST00000330684	NM_001134407.1	762	gGa/gAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943730	9943730	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	143	336	0	ENST00000330684.3:c.1211A>G	p.Asn404Ser	p.N404S	ENST00000330684	NM_001134407.1	404	aAc/aGc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029000	14029000	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	45	85	0	ENST00000311895.7:c.1214-3C>T		p.X405_splice	ENST00000311895	NM_005236.2	405																																																																															
MAPK3	5595	MSKCC	GRCh37	16	30129794	30129794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	164	315	0	ENST00000263025.4:c.419A>G	p.Asn140Ser	p.N140S	ENST00000263025	NM_002746.2	140	aAt/aGt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50784085	50784085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	158	353	0	ENST00000398568.2:c.476C>T	p.Ser159Phe	p.S159F	ENST00000398568	NM_001042412.1	159	tCc/tTc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663412	67663412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	124	221	0	ENST00000264010.4:c.1813A>G	p.Lys605Glu	p.K605E	ENST00000264010	NM_006565.3	605	Aag/Gag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81962179	81962179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	163	321	0	ENST00000359376.3:c.2531C>T	p.Pro844Leu	p.P844L	ENST00000359376	NM_002661.3	844	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	456	483	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29576001	29576001	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	204	197	0	ENST00000358273.4:c.3975-1G>A		p.X1325_splice	ENST00000358273	NM_001042492.2	1325																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30264440	30264440	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	327	395	0	ENST00000322652.5:c.175T>A	p.Ser59Thr	p.S59T	ENST00000322652	NM_015355.2	59	Tcc/Acc																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805762	46805762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	292	357	0	ENST00000290295.7:c.194C>T	p.Pro65Leu	p.P65L	ENST00000290295	NM_006361.5	65	cCa/cTa																																																																														
MSI2	124540	MSKCC	GRCh37	17	55693370	55693370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	448	426	0	ENST00000284073.2:c.577C>T	p.Pro193Ser	p.P193S	ENST00000284073	NM_138962.2	193	Cca/Tca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435556	56435557	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	279	377	0	ENST00000407977.2:c.1580_1581delinsTT	p.Thr527Ile	p.T527I	ENST00000407977		527	aCC/aTT																																																																														
CD79B	974	MSKCC	GRCh37	17	62007576	62007576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	342	416	1	ENST00000392795.3:c.291G>A	p.Met97Ile	p.M97I	ENST00000392795	NM_001039933.1	97	atG/atA																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796989	78796989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	251	221	0	ENST00000306801.3:c.1102C>T	p.Pro368Ser	p.P368S	ENST00000306801	NM_020761.2	368	Ccg/Tcg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231585	5231585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	101	167	3	ENST00000357368.4:c.1891C>T	p.Arg631Cys	p.R631C	ENST00000357368	NM_002850.3	631	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218449	36218449	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	155	346	0	ENST00000222270.7:c.4228C>T	p.Gln1410Ter	p.Q1410*	ENST00000222270	NM_014727.1	1410	Cag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223013	36223013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	268	515	0	ENST00000222270.7:c.5642C>T	p.Ser1881Phe	p.S1881F	ENST00000222270	NM_014727.1	1881	tCc/tTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42796979	42796979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145102151		P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1376	273	535	1	ENST00000575354.2:c.3437C>T	p.Pro1146Leu	p.P1146L	ENST00000575354	NM_015125.3	1146	cCa/cTa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45858059	45858059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	238	507	1	ENST00000391945.4:c.1594C>T	p.Pro532Ser	p.P532S	ENST00000391945	NM_000400.3	532	Cct/Tct																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505478	25505478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	156	272	0	ENST00000264709.3:c.280G>A	p.Glu94Lys	p.E94K	ENST00000264709	NM_175629.2	94	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570097	212570097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	242	246	0	ENST00000342788.4:c.1144G>A	p.Glu382Lys	p.E382K	ENST00000342788	NM_005235.2	382	Gaa/Aaa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525080	9525080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	158	327	0	ENST00000353224.5:c.1805C>T	p.Ser602Leu	p.S602L	ENST00000353224	NM_177990.2	602	tCa/tTa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546608	9546608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	190	269	0	ENST00000353224.5:c.1414G>A	p.Gly472Arg	p.G472R	ENST00000353224	NM_177990.2	472	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40864896	40864896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	119	278	0	ENST00000373198.4:c.2372G>A	p.Arg791Lys	p.R791K	ENST00000373198	NM_133170.3	791	aGa/aAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100959	41100959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	158	274	0	ENST00000373198.4:c.1397A>G	p.Asn466Ser	p.N466S	ENST00000373198	NM_133170.3	466	aAc/aGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408905	41408905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	149	260	0	ENST00000373198.4:c.521C>T	p.Pro174Leu	p.P174L	ENST00000373198	NM_133170.3	174	cCt/cTt																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319954	62319954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	118	301	0	ENST00000508582.2:c.1868C>T	p.Ser623Phe	p.S623F	ENST00000508582		623	tCc/tTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41546048	41546048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	240	415	0	ENST00000263253.7:c.2663C>T	p.Pro888Leu	p.P888L	ENST00000263253	NM_001429.3	888	cCa/cTa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932624	49932624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	202	358	0	ENST00000296474.3:c.3247C>T	p.His1083Tyr	p.H1083Y	ENST00000296474	NM_002447.2	1083	Cac/Tac																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443756	52443756	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	159	346	0	ENST00000460680.1:c.41T>C	p.Leu14Pro	p.L14P	ENST00000460680	NM_004656.3	14	cTc/cCc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71102882	71102882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	113	174	0	ENST00000318789.4:c.325C>T	p.Pro109Ser	p.P109S	ENST00000318789	NM_032682.5	109	Ccc/Tcc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461413	138461413	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	76	171	0	ENST00000289153.2:c.608T>G	p.Phe203Cys	p.F203C	ENST00000289153	NM_006219.2	203	tTt/tGt																																																																														
ATR	545	MSKCC	GRCh37	3	142238575	142238575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	85	143	0	ENST00000350721.4:c.4318C>T	p.His1440Tyr	p.H1440Y	ENST00000350721	NM_001184.3	1440	Cac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	106	232	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TP63	8626	MSKCC	GRCh37	3	189582106	189582106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	170	332	0	ENST00000264731.3:c.665G>A	p.Gly222Glu	p.G222E	ENST00000264731	NM_003722.4	222	gGa/gAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	110	273	0	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748170	41748170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	159	358	0	ENST00000226382.2:c.599C>T	p.Pro200Leu	p.P200L	ENST00000226382	NM_003924.3	200	cCc/cTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155180	55155180	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267600187		P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	160	253	0	ENST00000257290.5:c.2779G>A	p.Glu927Lys	p.E927K	ENST00000257290	NM_006206.4	927	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55979597	55979597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	186	327	0	ENST00000263923.4:c.850G>A	p.Glu284Lys	p.E284K	ENST00000263923	NM_002253.2	284	Gag/Aag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66242749	66242749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	123	260	0	ENST00000273854.3:c.1823C>T	p.Ser608Phe	p.S608F	ENST00000273854	NM_004439.5	608	tCc/tTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156493	106156493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	161	252	0	ENST00000380013.4:c.1394C>T	p.Pro465Leu	p.P465L	ENST00000380013	NM_001127208.2	465	cCa/cTa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143350355	143350355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	78	196	0	ENST00000262992.4:c.107C>T	p.Pro36Leu	p.P36L	ENST00000262992	NM_001101669.1	36	cCa/cTa																																																																														
SDHA	6389	MSKCC	GRCh37	5	225663	225665	+	frameshift_variant	Frame_Shift_Del	DEL	GCC	GCC	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	85	484	0	ENST00000264932.6:c.442_444delinsT	p.Ala148CysfsTer13	p.A148Cfs*13	ENST00000264932	NM_004168.2	148	GCC/T																																																																														
TERT	7015	MSKCC	GRCh37	5	1254587	1254587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	238	361	0	ENST00000310581.5:c.3191C>T	p.Pro1064Leu	p.P1064L	ENST00000310581	NM_198253.2	1064	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1260660	1260660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	226	373	0	ENST00000310581.5:c.2899G>A	p.Gly967Arg	p.G967R	ENST00000310581	NM_198253.2	967	Ggg/Agg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	153	276	1				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	163	302	0				ENST00000310581	NM_198253.2																																																																																
PLK2	10769	MSKCC	GRCh37	5	57753379	57753379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	118	219	0	ENST00000274289.3:c.745C>T	p.Pro249Ser	p.P249S	ENST00000274289	NM_006622.3	249	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112177484	112177485	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	100	205	0	ENST00000257430.4:c.6193_6194delinsTT	p.Pro2065Phe	p.P2065F	ENST00000257430	NM_000038.5	2065	CCc/TTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149511632	149511632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	144	267	0	ENST00000261799.4:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000261799	NM_002609.3	385	Cgc/Tgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052995	180052995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	238	607	0	ENST00000261937.6:c.1295C>T	p.Pro432Leu	p.P432L	ENST00000261937	NM_182925.4	432	cCc/cTc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056403	180056403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149373386		P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	160	316	0	ENST00000261937.6:c.841G>A	p.Glu281Lys	p.E281K	ENST00000261937	NM_182925.4	281	Gag/Aag																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	257	445	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184737	32184737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	222	372	0	ENST00000375023.3:c.1846C>T	p.Pro616Ser	p.P616S	ENST00000375023	NM_004557.3	616	Ccc/Tcc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800433	32800433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1352	300	549	0	ENST00000374899.4:c.1114G>A	p.Glu372Lys	p.E372K	ENST00000374899	NM_018833.2	372	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956509	93956509	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	84	124	0	ENST00000369303.4:c.2726+1G>A		p.X909_splice	ENST00000369303	NM_004440.3	909																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93979219	93979219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	81	193	0	ENST00000369303.4:c.1609G>A	p.Glu537Lys	p.E537K	ENST00000369303	NM_004440.3	537	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068003	94068003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	118	175	0	ENST00000369303.4:c.959C>T	p.Pro320Leu	p.P320L	ENST00000369303	NM_004440.3	320	cCa/cTa																																																																														
FYN	2534	MSKCC	GRCh37	6	112017478	112017478	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	121	182	0	ENST00000368678.4:c.1033+2T>C		p.X345_splice	ENST00000368678		345																																																																															
ROS1	6098	MSKCC	GRCh37	6	117630069	117630069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	94	218	0	ENST00000368508.3:c.6457G>A	p.Glu2153Lys	p.E2153K	ENST00000368508	NM_002944.2	2153	Gag/Aag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117645530	117645530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	129	253	0	ENST00000368508.3:c.5606G>A	p.Gly1869Glu	p.G1869E	ENST00000368508	NM_002944.2	1869	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662625	117662625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	160	321	0	ENST00000368508.3:c.4840C>T	p.Pro1614Ser	p.P1614S	ENST00000368508	NM_002944.2	1614	Cca/Tca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681046	117681046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	169	284	0	ENST00000368508.3:c.3574G>A	p.Asp1192Asn	p.D1192N	ENST00000368508	NM_002944.2	1192	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724305	117724305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	149	296	0	ENST00000368508.3:c.574G>A	p.Gly192Arg	p.G192R	ENST00000368508	NM_002944.2	192	Gga/Aga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265323	152265323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	131	167	0	ENST00000206249.3:c.776G>A	p.Arg259Gln	p.R259Q	ENST00000206249	NM_000125.3	259	cGa/cAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522148	157522148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	169	302	1	ENST00000346085.5:c.4420C>T	p.Pro1474Ser	p.P1474S	ENST00000346085	NM_020732.3	1474	Ccc/Tcc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976791	2976791	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	623	437	0	ENST00000396946.4:c.1221C>G	p.Ile407Met	p.I407M	ENST00000396946	NM_032415.4	407	atC/atG																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729952	41729952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	144	330	1	ENST00000242208.4:c.577G>A	p.Glu193Lys	p.E193K	ENST00000242208	NM_002192.2	193	Gag/Aag																																																																														
HGF	3082	MSKCC	GRCh37	7	81381466	81381466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	104	181	0	ENST00000222390.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000222390	NM_000601.4	199	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508609	106508609	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	109	260	0	ENST00000359195.3:c.603G>A	p.Trp201Ter	p.W201*	ENST00000359195	NM_002649.2	201	tgG/tgA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509015	106509015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	143	263	0	ENST00000359195.3:c.1009G>A	p.Glu337Lys	p.E337K	ENST00000359195	NM_002649.2	337	Gag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515145	106515145	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	163	261	0	ENST00000359195.3:c.2288T>G	p.Val763Gly	p.V763G	ENST00000359195	NM_002649.2	763	gTt/gGt																																																																														
MET	4233	MSKCC	GRCh37	7	116395557	116395557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	122	235	0	ENST00000397752.3:c.1850G>A	p.Ser617Asn	p.S617N	ENST00000397752	NM_000245.2	617	aGc/aAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860052	151860052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	94	177	0	ENST00000262189.6:c.10610G>A	p.Gly3537Glu	p.G3537E	ENST00000262189	NM_170606.2	3537	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874538	151874538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	132	178	0	ENST00000262189.6:c.8000C>T	p.Pro2667Leu	p.P2667L	ENST00000262189	NM_170606.2	2667	cCg/cTg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29197680	29197680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	195	483	2	ENST00000240100.2:c.514C>T	p.Pro172Ser	p.P172S	ENST00000240100	NM_001394.6	172	Ccc/Tcc																																																																														
LYN	4067	MSKCC	GRCh37	8	56882275	56882275	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	134	278	0	ENST00000519728.1:c.974-1G>A		p.X325_splice	ENST00000519728	NM_002350.3	325																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046410	69046410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	152	314	0	ENST00000288368.4:c.3883G>A	p.Glu1295Lys	p.E1295K	ENST00000288368	NM_024870.2	1295	Gaa/Aaa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5065040	5065040	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	134	213	0	ENST00000381652.3:c.1214C>T	p.Ser405Leu	p.S405L	ENST00000381652	NM_004972.3	405	tCg/tTg																																																																														
TEK	7010	MSKCC	GRCh37	9	27158095	27158095	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	344	378	0	ENST00000380036.4:c.319C>T	p.Arg107Ter	p.R107*	ENST00000380036	NM_000459.3	107	Cga/Tga																																																																														
TEK	7010	MSKCC	GRCh37	9	27169586	27169586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	221	406	1	ENST00000380036.4:c.587G>A	p.Gly196Glu	p.G196E	ENST00000380036	NM_000459.3	196	gGa/gAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27209131	27209131	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	184	316	0	ENST00000380036.4:c.2588A>T	p.Lys863Ile	p.K863I	ENST00000380036	NM_000459.3	863	aAa/aTa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932584	39932584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	264	232	0	ENST00000378444.4:c.2015C>T	p.Ser672Phe	p.S672F	ENST00000378444	NM_001123385.1	672	tCc/tTc																																																																														
BTK	695	MSKCC	GRCh37	X	100615568	100615568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	143	150	0	ENST00000308731.7:c.764G>A	p.Arg255Gln	p.R255Q	ENST00000308731	NM_000061.2	255	cGa/cAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115110032	115110032	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1290	251	457	0	ENST00000257566.3:c.1846T>G	p.Ser616Ala	p.S616A	ENST00000257566	NM_016569.3	616	Tct/Gct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261757	16261757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	185	342	0	ENST00000375759.3:c.9022C>T	p.Pro3008Ser	p.P3008S	ENST00000375759	NM_015001.2	3008	Cca/Tca																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	200	470	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193107257	193107257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	91	171	0	ENST00000367435.3:c.466C>T	p.Arg156Cys	p.R156C	ENST00000367435	NM_024529.4	156	Cgt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	128	316	1	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416713	121416713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	242	488	0	ENST00000257555.6:c.142G>A	p.Glu48Lys	p.E48K	ENST00000257555		48	Gag/Aag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964193	28964193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	95	213	0	ENST00000282397.4:c.1709G>A	p.Gly570Glu	p.G570E	ENST00000282397	NM_002019.4	570	gGa/gAa																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281662	49281662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	288	459	2	ENST00000282018.3:c.709G>A	p.Gly237Arg	p.G237R	ENST00000282018	NM_020377.2	237	Ggg/Agg																																																																														
CDH1	999	MSKCC	GRCh37	16	68853251	68853251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	228	396	0	ENST00000261769.5:c.1634G>A	p.Arg545Gln	p.R545Q	ENST00000261769	NM_004360.3	545	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828347	72828347	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	173	305	0	ENST00000268489.5:c.8234T>C	p.Leu2745Pro	p.L2745P	ENST00000268489	NM_006885.3	2745	cTa/cCa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868409	45868409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	266	519	0	ENST00000391945.4:c.368C>T	p.Pro123Leu	p.P123L	ENST00000391945	NM_000400.3	123	cCc/cTc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42860440	42860440	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	146	306	0	ENST00000398585.3:c.437T>A	p.Met146Lys	p.M146K	ENST00000398585	NM_001135099.1	146	aTg/aAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163813	47163814	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	108	236	0	ENST00000409792.3:c.2312_2313delCCinsTT	p.Ser771Phe	p.S771F	ENST00000409792	NM_014159.6	771	tCC/tTT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509084	66509085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	69	231	0	ENST00000273854.3:c.242dupA	p.Asn81LysfsTer8	p.N81Kfs*8	ENST00000273854	NM_004439.5	81	aat/aaAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	171	378	1				ENST00000310581	NM_198253.2																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31407023	31407023	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	110	411	0	ENST00000344624.3:c.3884C>G	p.Ala1295Gly	p.A1295G	ENST00000344624		1295	gCc/gGc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968229	2968229	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	474	530	1	ENST00000396946.4:c.1754+3G>A		p.X585_splice	ENST00000396946	NM_032415.4	585																																																																															
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	298	330	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	136	225	1	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	205	344	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	205	344	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	205	344	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76889178	76889178	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	223	202	0	ENST00000373344.5:c.4832T>C	p.Val1611Ala	p.V1611A	ENST00000373344	NM_000489.3	1611	gTt/gCt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163814	47163814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	103	236	0	ENST00000409792.3:c.2312C>T	p.Ser771Phe	p.S771F	ENST00000409792	NM_014159.6	771	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857974	9857974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61758996		P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	223	436	0	ENST00000330684.3:c.3427G>A	p.Glu1143Lys	p.E1143K	ENST00000330684	NM_001134407.1	1143	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	292	489	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	41419837	41419837	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	151	267	0	ENST00000373198.4:c.484C>T	p.Gln162Ter	p.Q162*	ENST00000373198	NM_133170.3	162	Cag/Tag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873724	35873724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148165103		P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	121	254	0	ENST00000303115.3:c.680G>A	p.Arg227Lys	p.R227K	ENST00000303115	NM_002185.3	227	aGa/aAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248683	212248683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	119	290	0	ENST00000342788.4:c.3584C>T	p.Pro1195Leu	p.P1195L	ENST00000342788	NM_005235.2	1195	cCa/cTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41521893	41521893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	230	592	0	ENST00000263253.7:c.755C>T	p.Pro252Leu	p.P252L	ENST00000263253	NM_001429.3	252	cCt/cTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	337	459	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417602	139417602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	360	763	0	ENST00000277541.6:c.442C>T	p.Pro148Ser	p.P148S	ENST00000277541	NM_017617.3	148	Ccc/Tcc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131930595	131930595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	91	262	0	ENST00000265335.6:c.1828C>T	p.His610Tyr	p.H610Y	ENST00000265335		610	Cat/Tat																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94163118	94163119	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	131	385	0	ENST00000323929.3:c.2028_2029delCCinsTT	p.Gln677Ter	p.Q677*	ENST00000323929	NM_005591.3	676	tcCCag/tcTTag																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40364030	40364030	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	483	561	0	ENST00000293328.3:c.1652T>C	p.Leu551Pro	p.L551P	ENST00000293328	NM_012448.3	551	cTg/cCg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087515	27087516	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	205	545	1	ENST00000324856.7:c.2089_2090delCCinsTT	p.Pro697Leu	p.P697L	ENST00000324856	NM_006015.4	697	CCg/TTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087519	27087519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	277	544	1	ENST00000324856.7:c.2093C>T	p.Ser698Phe	p.S698F	ENST00000324856	NM_006015.4	698	tCc/tTc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599278	28599278	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	341	684	0	ENST00000253063.3:c.724A>C	p.Ser242Arg	p.S242R	ENST00000253063	NM_031459.4	242	Agc/Cgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339094	65339094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	183	377	0	ENST00000342505.4:c.442C>T	p.Pro148Ser	p.P148S	ENST00000342505	NM_002227.2	148	Cct/Tct																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745609	162745609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	182	387	0	ENST00000367921.3:c.2024C>T	p.Ser675Phe	p.S675F	ENST00000367921	NM_006182.2	675	tCc/tTc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573174	64573174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	276	559	0	ENST00000337652.1:c.1133C>A	p.Pro378His	p.P378H	ENST00000337652	NM_130803.2	378	cCc/cAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432368	432368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	81	185	1	ENST00000399788.2:c.2155C>T	p.Arg719Cys	p.R719C	ENST00000399788	NM_001042603.1	719	Cgc/Tgc																																																																														
MDM2	4193	MSKCC	GRCh37	12	69230464	69230464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	136	336	0	ENST00000462284.1:c.853A>G	p.Thr285Ala	p.T285A	ENST00000462284	NM_002392.5	285	Act/Gct																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120984	115120984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	205	446	0	ENST00000257566.3:c.22C>T	p.Pro8Ser	p.P8S	ENST00000257566	NM_016569.3	8	Ccg/Tcg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005342	29005342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	155	465	0	ENST00000282397.4:c.919G>A	p.Gly307Arg	p.G307R	ENST00000282397	NM_002019.4	307	Gga/Aga																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119008	3119009	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	237	569	1	ENST00000078429.4:c.692_693delCCinsTT	p.Ala231Val	p.A231V	ENST00000078429	NM_002067.2	231	gCC/gTT																																																																														
CARM1	10498	MSKCC	GRCh37	19	11015753	11015753	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	138	301	0	ENST00000327064.4:c.346+1G>A		p.X116_splice	ENST00000327064	NM_199141.1	116																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271975	15271976	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	202	566	1	ENST00000263388.2:c.6463_6464delGGinsAA	p.Gly2155Lys	p.G2155K	ENST00000263388	NM_000435.2	2155	GGa/AAa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945785	17945785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	191	499	0	ENST00000458235.1:c.2075C>T	p.Ala692Val	p.A692V	ENST00000458235	NM_000215.3	692	gCc/gTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219686	36219686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	283	565	0	ENST00000222270.7:c.4583C>T	p.Pro1528Leu	p.P1528L	ENST00000222270	NM_014727.1	1528	cCc/cTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589823	212589823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	182	352	0	ENST00000342788.4:c.719G>A	p.Gly240Glu	p.G240E	ENST00000342788	NM_005235.2	240	gGa/gAa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46276009	46276009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	251	504	2	ENST00000371998.3:c.3445C>T	p.Pro1149Ser	p.P1149S	ENST00000371998		1149	Cct/Tct																																																																														
RAC2	5880	MSKCC	GRCh37	22	37628034	37628034	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	215	417	0	ENST00000249071.6:c.226G>A	p.Asp76Asn	p.D76N	ENST00000249071	NM_002872.4	76	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295274	1295274	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	263	558	0				ENST00000310581	NM_198253.2																																																																																
HIST1H3G	8355	MSKCC	GRCh37	6	26271349	26271350	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	159	326	0	ENST00000305910.3:c.263_264delCCinsTT	p.Ser88Phe	p.S88F	ENST00000305910	NM_003534.2	88	tCC/tTT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674155	117674155	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	202	377	0	ENST00000368508.3:c.4319C>T	p.Pro1440Leu	p.P1440L	ENST00000368508	NM_002944.2	1440	cCa/cTa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946418	2946418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	303	636	0	ENST00000396946.4:c.3319G>A	p.Glu1107Lys	p.E1107K	ENST00000396946	NM_032415.4	1107	Gag/Aag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976769	2976769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	236	606	0	ENST00000396946.4:c.1243G>A	p.Asp415Asn	p.D415N	ENST00000396946	NM_032415.4	415	Gac/Aac																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729673	41729673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	179	400	0	ENST00000242208.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000242208	NM_002192.2	286	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68972936	68972936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	161	326	0	ENST00000288368.4:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000288368	NM_024870.2	421	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028013	69028013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	126	363	0	ENST00000288368.4:c.3172C>T	p.Pro1058Ser	p.P1058S	ENST00000288368	NM_024870.2	1058	Cct/Tct																																																																														
TEK	7010	MSKCC	GRCh37	9	27213479	27213479	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	101	251	0	ENST00000380036.4:c.2878-3C>T		p.X960_splice	ENST00000380036	NM_000459.3	960																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259054	153259056	+	missense_variant	Missense_Mutation	ONP	TCT	TCT	ACA			P-0015526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	55	166	0	ENST00000281708.4:c.759_761delAGAinsTGT	p.LeuAsp253PheVal	p.LD253FV	ENST00000281708	NM_033632.3	253	ttAGAt/ttTGTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	118	324	0				ENST00000310581	NM_198253.2																																																																																
MAP2K1	5604	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	12	835	0	ENST00000307102.5:c.371C>G	p.Pro124Arg	p.P124R	ENST00000307102	NM_002755.3	124	cCg/cGg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	176	507	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	16	665	0	ENST00000256078.4:c.351A>C	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaC																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	156	680	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88428957	88428957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	62	533	0	ENST00000360948.2:c.2143C>T	p.Pro715Ser	p.P715S	ENST00000360948	NM_001012338.2	715	Cca/Tca																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46726977	46726977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	181	690	0	ENST00000371975.4:c.811C>T	p.Leu271Phe	p.L271F	ENST00000371975	NM_003579.3	271	Ctc/Ttc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781326	3781326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	116	928	0	ENST00000262367.5:c.5039C>T	p.Ser1680Phe	p.S1680F	ENST00000262367	NM_004380.2	1680	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892206	9892206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	50	700	0	ENST00000330684.3:c.2284G>A	p.Gly762Arg	p.G762R	ENST00000330684	NM_001134407.1	762	Gga/Aga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554006	63554006	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62640028		P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	58	613	1	ENST00000307078.5:c.733C>T	p.Pro245Ser	p.P245S	ENST00000307078	NM_004655.3	245	Cca/Tca																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591143	67591151	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AATACTTGA	AATACTTGA	-			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	68	534	0	ENST00000274335.5:c.1736_1744del	p.Gln579_Met582delinsLeu	p.Q579_M582delinsL	ENST00000274335		579	cAATACTTGAtg/ctg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523709	176523709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	75	713	3	ENST00000292408.4:c.2120G>A	p.Arg707Gln	p.R707Q	ENST00000292408	NM_213647.1	707	cGg/cAg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638416	176638416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	107	833	1	ENST00000439151.2:c.3016C>T	p.Pro1006Ser	p.P1006S	ENST00000439151	NM_022455.4	1006	Cct/Tct																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671967	30671967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	76	908	0	ENST00000376406.3:c.4993C>T	p.Pro1665Ser	p.P1665S	ENST00000376406	NM_014641.2	1665	Ccc/Tcc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681955	30681955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	54	287	0	ENST00000376406.3:c.142C>T	p.Pro48Ser	p.P48S	ENST00000376406	NM_014641.2	48	Cca/Tca																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969090	93969090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	55	366	0	ENST00000369303.4:c.1906G>A	p.Glu636Lys	p.E636K	ENST00000369303	NM_004440.3	636	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971060	21971063	+	frameshift_variant	Frame_Shift_Ins	INS	CCCG	CCCG	TCCCC			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	112	244	0	ENST00000304494.5:c.295_298delinsGGGGA	p.Arg99GlyfsTer21	p.R99Gfs*21	ENST00000304494	NM_000077.4	99	CGGGcc/GGGGAcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971060	21971063	+	frameshift_variant	Frame_Shift_Ins	INS	CCCG	CCCG	TCCCC			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	112	244	0	ENST00000304494.5:c.295_298delinsGGGGA	p.Arg99GlyfsTer21	p.R99Gfs*21	ENST00000304494	NM_000077.4	99	CGGGcc/GGGGAcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971060	21971063	+	frameshift_variant	Frame_Shift_Ins	INS	CCCG	CCCG	TCCCC			P-0015544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	112	244	0	ENST00000304494.5:c.295_298delinsGGGGA	p.Arg99GlyfsTer21	p.R99Gfs*21	ENST00000304494	NM_000077.4	99	CGGGcc/GGGGAcc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	66	238	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
MED12	9968	MSKCC	GRCh37	X	70346188	70346188	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	371	369	0	ENST00000374080.3:c.2542-3C>G		p.X848_splice	ENST00000374080		848																																																																															
ID3	3399	MSKCC	GRCh37	1	23885731	23885731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	110	392	0	ENST00000374561.5:c.187C>G	p.Gln63Glu	p.Q63E	ENST00000374561	NM_002167.4	63	Cag/Gag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392792	118392792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	62	358	0	ENST00000534358.1:c.11824G>A	p.Glu3942Lys	p.E3942K	ENST00000534358	NM_005933.3	3942	Gaa/Aaa																																																																														
CBL	867	MSKCC	GRCh37	11	119145657	119145657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	71	226	0	ENST00000264033.4:c.863C>G	p.Pro288Arg	p.P288R	ENST00000264033	NM_005188.3	288	cCt/cGt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32968900	32968900	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	61	258	3	ENST00000380152.3:c.9331G>T	p.Glu3111Ter	p.E3111*	ENST00000380152		3111	Gag/Tag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476251	88476251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	126	406	0	ENST00000360948.2:c.1881G>T	p.Lys627Asn	p.K627N	ENST00000360948	NM_001012338.2	627	aaG/aaT																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56770022	56770022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	58	294	0	ENST00000337432.4:c.18C>A	p.Phe6Leu	p.F6L	ENST00000337432	NM_058216.2	6	ttC/ttA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735501	40735501	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	65	418	0	ENST00000373198.4:c.3372G>C	p.Glu1124Asp	p.E1124D	ENST00000373198	NM_133170.3	1124	gaG/gaC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877802	151877802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	70	164	0	ENST00000262189.6:c.7143G>C	p.Leu2381Phe	p.L2381F	ENST00000262189	NM_170606.2	2381	ttG/ttC																																																																														
LYN	4067	MSKCC	GRCh37	8	56910902	56910902	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	68	284	0	ENST00000519728.1:c.1051-3C>T		p.X351_splice	ENST00000519728	NM_002350.3	351																																																																															
MET	4233	MSKCC	GRCh37	7	116412033	116412046	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCCAGAAGGTA	TTTTCCAGAAGGTA	G			P-0015590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	443	480	0	ENST00000397752.3:c.3018_3028+3delinsG		p.X1006_splice	ENST00000397752	NM_000245.2	1006																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	188	516	1				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1224	279	592	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG																																																																														
CASP8	841	MSKCC	GRCh37	2	202137620	202137620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0015660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	279	457	0	ENST00000358485.4:c.728-1G>C		p.X243_splice	ENST00000358485	NM_001080125.1	243																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81953195	81953195	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187454354		P-0015660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	130	337	0	ENST00000359376.3:c.2161G>A	p.Glu721Lys	p.E721K	ENST00000359376	NM_002661.3	721	Gag/Aag																																																																														
STK40	83931	MSKCC	GRCh37	1	36809854	36809854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1274	257	534	0	ENST00000373129.3:c.751C>T	p.Arg251Cys	p.R251C	ENST00000373129	NM_032017.1	251	Cgt/Tgt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724943	162724943	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0015660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	52	271	0	ENST00000367921.3:c.418-3C>G		p.X140_splice	ENST00000367921	NM_006182.2	140																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72923773	72923773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1248	210	501	0	ENST00000268489.5:c.3305A>G	p.Asn1102Ser	p.N1102S	ENST00000268489	NM_006885.3	1102	aAc/aGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29527726	29528203	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAAGTTCATAGGACTTGCTTTTGTTGTTACTGTGTTCATCAGCCTAAATGGACTGAGAATATGAAGAAAACACCATTTTCTTAAATAAGCATAAATATACAGACTTGGGTTTAAAATAATGTGGCAATTAGGGCCTGAAATGAACCTATATATGGTATAGGAAGAATTGTATCAGACTGATGAACCACAGTATGGGTGCTTTGTGCTTCTTCTGGCAGCTGGATTTTACTGCCATTTGTGTGGGTAATGTGTTGATGTTATTACATGTTAGTAAAGAAATACTGCATGGGTATTTAAAGGCTTTTGTTTTCTGTTGGGGTTTTTATAGAACCTGCTTTTTAATCCAAGTAAGCCATTCTCAAGAGGCAGTCAGCCTGCAGATGTGGATCTAATGATTGACTGCCTTGTTTCTTGCTTTCGTATAAGCCCTCACAACAACCAACACTTTAAGGTGAGAGCATTGGTTTTTATCTAACT	ATAAGTTCATAGGACTTGCTTTTGTTGTTACTGTGTTCATCAGCCTAAATGGACTGAGAATATGAAGAAAACACCATTTTCTTAAATAAGCATAAATATACAGACTTGGGTTTAAAATAATGTGGCAATTAGGGCCTGAAATGAACCTATATATGGTATAGGAAGAATTGTATCAGACTGATGAACCACAGTATGGGTGCTTTGTGCTTCTTCTGGCAGCTGGATTTTACTGCCATTTGTGTGGGTAATGTGTTGATGTTATTACATGTTAGTAAAGAAATACTGCATGGGTATTTAAAGGCTTTTGTTTTCTGTTGGGGTTTTTATAGAACCTGCTTTTTAATCCAAGTAAGCCATTCTCAAGAGGCAGTCAGCCTGCAGATGTGGATCTAATGATTGACTGCCTTGTTTCTTGCTTTCGTATAAGCCCTCACAACAACCAACACTTTAAGGTGAGAGCATTGGTTTTTATCTAACT	-			P-0015660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	13	61	0	ENST00000358273.4:c.1062+116_1185+29del		p.X354_splice	ENST00000358273	NM_001042492.2	354																																																																															
NF1	4763	MSKCC	GRCh37	17	29554305	29554305	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1544	141	744	0	ENST00000358273.4:c.2321C>G	p.Thr774Ser	p.T774S	ENST00000358273	NM_001042492.2	774	aCt/aGt																																																																														
RHOA	387	MSKCC	GRCh37	3	49412958	49412958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1571	524	695	0	ENST00000418115.1:c.65T>C	p.Leu22Pro	p.L22P	ENST00000418115	NM_001664.2	22	cTc/cCc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612198	189612198	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	377	521	0	ENST00000264731.3:c.1950C>G	p.Ile650Met	p.I650M	ENST00000264731	NM_003722.4	650	atC/atG																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	662	676	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	441	695	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930238	39930238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202065982		P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	221	549	0	ENST00000378444.4:c.3226G>A	p.Glu1076Lys	p.E1076K	ENST00000378444	NM_001123385.1	1076	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	511	525	1				ENST00000310581	NM_198253.2																																																																																
CBL	867	MSKCC	GRCh37	11	119170256	119170256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	168	269	0	ENST00000264033.4:c.2486G>A	p.Arg829Gln	p.R829Q	ENST00000264033	NM_005188.3	829	cGg/cAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11288834	11288834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	342	486	0	ENST00000361445.4:c.2921C>T	p.Ala974Val	p.A974V	ENST00000361445	NM_004958.3	974	gCc/gTc																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39305335	39305335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	686	730	0	ENST00000373001.3:c.1090C>T	p.His364Tyr	p.H364Y	ENST00000373001	NM_022157.3	364	Cat/Tat																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838378	156838378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	397	805	0	ENST00000524377.1:c.656G>A	p.Gly219Glu	p.G219E	ENST00000524377	NM_002529.3	219	gGg/gAg																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612627	228612627	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	722	493	0	ENST00000366696.1:c.400G>T	p.Glu134Ter	p.E134*	ENST00000366696	NM_003493.2	134	Gag/Tag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89871799	89871799	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	378	597	0	ENST00000389301.3:c.598C>T	p.His200Tyr	p.H200Y	ENST00000389301	NM_000135.2	200	Cat/Tat																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533660	63533661	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	381	574	1	ENST00000307078.5:c.1493_1494delCCinsTT	p.Pro498Leu	p.P498L	ENST00000307078	NM_004655.3	498	cCC/cTT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219891	36219891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	331	615	1	ENST00000222270.7:c.4693C>T	p.Gln1565Ter	p.Q1565*	ENST00000222270	NM_014727.1	1565	Cag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528649	157528649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	444	721	0	ENST00000346085.5:c.6374C>T	p.Pro2125Leu	p.P2125L	ENST00000346085	NM_020732.3	2125	cCa/cTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992737	68992737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200411060		P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	493	678	0	ENST00000288368.4:c.1702G>A	p.Glu568Lys	p.E568K	ENST00000288368	NM_024870.2	568	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	402	462	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	402	462	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	402	462	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76764050	76764050	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	319	655	0	ENST00000373344.5:c.7258C>T	p.Gln2420Ter	p.Q2420*	ENST00000373344	NM_000489.3	2420	Cag/Tag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217276	123217276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	151	458	0	ENST00000218089.9:c.2930G>A	p.Gly977Asp	p.G977D	ENST00000218089	NM_001042749.1	977	gGc/gAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	176	617	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	176	617	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	176	617	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	134	670	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656969	47656969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	39	443	0	ENST00000233146.2:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000233146	NM_000251.2	389	Cga/Tga																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88649939	88649939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	32	806	1	ENST00000372037.3:c.188G>T	p.Cys63Phe	p.C63F	ENST00000372037	NM_004329.2	63	tGc/tTc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120806883	120806883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	11	114	0	ENST00000257552.2:c.12C>A	p.Asp4Glu	p.D4E	ENST00000257552	NM_002442.3	4	gaC/gaA																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467430	25467430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	46	582	0	ENST00000264709.3:c.1646G>T	p.Cys549Phe	p.C549F	ENST00000264709	NM_175629.2	549	tGc/tTc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054887	5054887	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0015724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	56	473	0	ENST00000381652.3:c.936+3A>C		p.X312_splice	ENST00000381652	NM_004972.3	312																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	30	533	0				ENST00000310581	NM_198253.2																																																																																
ERCC3	2071	MSKCC	GRCh37	2	128044357	128044357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	67	567	0	ENST00000285398.2:c.1264G>A	p.Glu422Lys	p.E422K	ENST00000285398	NM_000122.1	422	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	49039365	49039365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	40	813	0	ENST00000267163.4:c.2350C>T	p.His784Tyr	p.H784Y	ENST00000267163	NM_000321.2	784	Cac/Tac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	243	667	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	43	755	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
RB1	5925	MSKCC	GRCh37	13	49039501	49039501	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	34	558	0	ENST00000267163.4:c.2486C>G	p.Ser829Ter	p.S829*	ENST00000267163	NM_000321.2	829	tCa/tGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106159	27106159	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	38	568	2	ENST00000324856.7:c.5770G>T	p.Glu1924Ter	p.E1924*	ENST00000324856	NM_006015.4	1924	Gag/Tag																																																																														
SUFU	51684	MSKCC	GRCh37	10	104375101	104375101	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	37	656	0	ENST00000369902.3:c.1099G>C	p.Glu367Gln	p.E367Q	ENST00000369902	NM_016169.3	367	Gag/Cag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911652	32911652	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	22	478	0	ENST00000380152.3:c.3160G>C	p.Asp1054His	p.D1054H	ENST00000380152		1054	Gat/Cat																																																																														
RB1	5925	MSKCC	GRCh37	13	49039131	49039131	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	21	234	0	ENST00000267163.4:c.2212-3C>G		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670427	88670427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	28	468	2	ENST00000360948.2:c.1259C>T	p.Thr420Ile	p.T420I	ENST00000360948	NM_001012338.2	420	aCt/aTt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45858001	45858001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	89	675	0	ENST00000391945.4:c.1652C>T	p.Ser551Phe	p.S551F	ENST00000391945	NM_000400.3	551	tCc/tTc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739099	145739099	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	16	452	0	ENST00000428558.2:c.2059-3C>G		p.X687_splice	ENST00000428558	NM_004260.3	687																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98218654	98218654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	31	483	0	ENST00000331920.6:c.3210G>A	p.Met1070Ile	p.M1070I	ENST00000331920	NM_000264.3	1070	atG/atA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928935	44928935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	38	275	1	ENST00000377967.4:c.2035C>T	p.Gln679Ter	p.Q679*	ENST00000377967	NM_021140.2	679	Cag/Tag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651923	36651928	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGGC	CAAGGC	TG			P-0015773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	42	553	0	ENST00000244741.5:c.45_50delCAAGGCinsTG	p.Lys16AlafsTer14	p.K16Afs*14	ENST00000244741	NM_000389.4	15	agCAAGGCc/agTGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16245968	16245968	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	222	513	0	ENST00000375759.3:c.1591C>T	p.Gln531Ter	p.Q531*	ENST00000375759	NM_015001.2	531	Cag/Tag																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163724	72163724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	209	789	0	ENST00000357731.5:c.634C>T	p.Pro212Ser	p.P212S	ENST00000357731	NM_173808.2	212	Cca/Tca																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205125	61205125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	312	739	0	ENST00000301761.2:c.65T>C	p.Leu22Ser	p.L22S	ENST00000301761	NM_017841.2	22	tTg/tCg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577204	64577204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	355	869	0	ENST00000337652.1:c.378G>A	p.Trp126Ter	p.W126*	ENST00000337652	NM_130803.2	126	tgG/tgA																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588235	69588235	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2062	208	457	0	ENST00000168712.1:c.463T>C	p.Cys155Arg	p.C155R	ENST00000168712	NM_002007.2	155	Tgc/Cgc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589776	69589776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	48	61	0	ENST00000168712.1:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000168712	NM_002007.2	26	cGa/cAa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66735666	66735666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	180	606	0	ENST00000307102.5:c.487G>A	p.Glu163Lys	p.E163K	ENST00000307102	NM_002755.3	163	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857296	9857296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	268	637	0	ENST00000330684.3:c.4105C>T	p.His1369Tyr	p.H1369Y	ENST00000330684	NM_001134407.1	1369	Cac/Tac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858456	9858456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	211	575	0	ENST00000330684.3:c.2945G>A	p.Gly982Glu	p.G982E	ENST00000330684	NM_001134407.1	982	gGa/gAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923375	9923375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	277	647	0	ENST00000330684.3:c.1912G>A	p.Ala638Thr	p.A638T	ENST00000330684	NM_001134407.1	638	Gct/Act																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934887	9934887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	243	707	1	ENST00000330684.3:c.1403C>T	p.Ser468Phe	p.S468F	ENST00000330684	NM_001134407.1	468	tCc/tTc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032534	12032534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	171	498	0	ENST00000353533.5:c.970G>A	p.Asp324Asn	p.D324N	ENST00000353533	NM_003010.3	324	Gat/Aat																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66511589	66511589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	246	505	0	ENST00000358598.2:c.49G>A	p.Glu17Lys	p.E17K	ENST00000358598	NM_212471.2	17	Gaa/Aaa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39584480	39584480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	271	396	0	ENST00000262039.4:c.1147del	p.Arg383GlyfsTer11	p.R383Gfs*11	ENST00000262039	NM_002647.2	382	gCc/gc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2199896	2199896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	350	864	0	ENST00000398665.3:c.665A>G	p.Asp222Gly	p.D222G	ENST00000398665	NM_032482.2	222	gAt/gGt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211154	36211154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1375	498	1202	4	ENST00000222270.7:c.905C>T	p.Pro302Leu	p.P302L	ENST00000222270	NM_014727.1	302	cCc/cTc																																																																														
ALK	238	MSKCC	GRCh37	2	29432704	29432704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	286	653	0	ENST00000389048.3:c.3784C>T	p.Pro1262Ser	p.P1262S	ENST00000389048	NM_004304.4	1262	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714462	40714462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	287	631	1	ENST00000373198.4:c.3935C>T	p.Ser1312Phe	p.S1312F	ENST00000373198	NM_133170.3	1312	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076940	41076940	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	210	658	1	ENST00000373198.4:c.1480C>T	p.Gln494Ter	p.Q494*	ENST00000373198	NM_133170.3	494	Caa/Taa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645693	12645693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	154	336	0	ENST00000251849.4:c.776C>T	p.Ser259Phe	p.S259F	ENST00000251849	NM_002880.3	259	tCc/tTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52613071	52613071	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	218	467	0	ENST00000394830.3:c.3457A>G	p.Arg1153Gly	p.R1153G	ENST00000394830	NM_018313.4	1153	Aga/Gga																																																																														
MITF	4286	MSKCC	GRCh37	3	69998265	69998265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	380	769	0	ENST00000352241.4:c.826A>G	p.Thr276Ala	p.T276A	ENST00000352241	NM_198159.2	276	Acc/Gcc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	209	565	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
KDR	3791	MSKCC	GRCh37	4	55964973	55964973	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	118	328	0	ENST00000263923.4:c.2267-3C>T		p.X756_splice	ENST00000263923	NM_002253.2	756																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	202	358	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35875648	35875648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	207	631	1	ENST00000303115.3:c.835C>T	p.His279Tyr	p.H279Y	ENST00000303115	NM_002185.3	279	Cat/Tat																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522522	67522522	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	93	254	0	ENST00000274335.5:c.19C>T	p.Gln7Ter	p.Q7*	ENST00000274335		7	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112173580	112173581	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	C			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	120	469	0	ENST00000257430.4:c.2289_2290delinsC	p.Glu763AspfsTer2	p.E763Dfs*2	ENST00000257430	NM_000038.5	763	gaATta/gaCta																																																																														
APC	324	MSKCC	GRCh37	5	112174437	112174439	+	stop_gained	Nonsense_Mutation	ONP	GGG	GGG	AGA			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	104	368	0	ENST00000257430.4:c.3146_3148delinsAGA	p.Trp1049_Ala1050delinsTer	p.W1049_A1050delins*	ENST00000257430	NM_000038.5	1049	tGGGca/tAGAca																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805518	32805518	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	404	1085	0	ENST00000374899.4:c.493G>A	p.Gly165Ser	p.G165S	ENST00000374899	NM_018833.2	165	Ggt/Agt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287962	33287962	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	210	481	0	ENST00000374542.5:c.1291T>G	p.Ser431Ala	p.S431A	ENST00000374542	NM_001141970.1	431	Tcc/Gcc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663590	117663590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	162	804	0	ENST00000368508.3:c.4642G>A	p.Glu1548Lys	p.E1548K	ENST00000368508	NM_002944.2	1548	Gag/Aag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963922	2963922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	358	856	1	ENST00000396946.4:c.1885G>A	p.Asp629Asn	p.D629N	ENST00000396946	NM_032415.4	629	Gat/Aat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509648	106509648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	351	672	2	ENST00000359195.3:c.1642C>T	p.Pro548Ser	p.P548S	ENST00000359195	NM_002649.2	548	Ccc/Tcc																																																																														
MET	4233	MSKCC	GRCh37	7	116412739	116412739	+	intron_variant	Intron	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	276	1145	0	ENST00000397752.3:c.3028+696C>T		p.*1010*	ENST00000397752	NM_000245.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151879365	151879366	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	239	546	2	ENST00000262189.6:c.5579_5580delinsTT	p.Ser1860Phe	p.S1860F	ENST00000262189	NM_170606.2	1860	tCC/tTT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484306	8484306	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	249	718	0	ENST00000356435.5:c.3226A>G	p.Lys1076Glu	p.K1076E	ENST00000356435		1076	Aag/Gag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517893	8517893	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200333683		P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	121	434	0	ENST00000356435.5:c.1498G>A	p.Asp500Asn	p.D500N	ENST00000356435		500	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970896	21970896	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	452	931	0	ENST00000304494.5:c.457+5G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970896	21970896	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	452	931	0	ENST00000304494.5:c.457+5G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
TEK	7010	MSKCC	GRCh37	9	27172691	27172692	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	293	785	3	ENST00000380036.4:c.706_707delinsAT	p.Asp236Ile	p.D236I	ENST00000380036	NM_000459.3	236	GAt/ATt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135776157	135776157	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	352	701	0	ENST00000298552.3:c.2570A>T	p.Glu857Val	p.E857V	ENST00000298552	NM_001162426.1	857	gAg/gTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006782	47006782	+	5_prime_UTR_variant	5'UTR	SNP	C	C	A			P-0015827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	307	701	0	ENST00000329236.7:c.-99C>A		p.*33*	ENST00000329236	NM_001204466.1																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	48	317	0				ENST00000310581	NM_198253.2																																																																																
PAK7	57144	MSKCC	GRCh37	20	9561418	9561418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	86	473	0	ENST00000353224.5:c.364G>A	p.Glu122Lys	p.E122K	ENST00000353224	NM_177990.2	122	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980844	40980844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	113	579	1	ENST00000373198.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000373198	NM_133170.3	548	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001438	29001438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	54	256	0	ENST00000282397.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000282397	NM_002019.4	432	Gaa/Aaa																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983275	149983275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	88	568	0	ENST00000253339.5:c.2983C>T	p.Arg995Cys	p.R995C	ENST00000253339		995	Cgc/Tgc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11169376	11169376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	165	588	0	ENST00000361445.4:c.7499T>A	p.Ile2500Asn	p.I2500N	ENST00000361445	NM_004958.3	2500	aTt/aAt																																																																														
CBL	867	MSKCC	GRCh37	11	119149241	119149241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	90	596	0	ENST00000264033.4:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000264033	NM_005188.3	417	Cct/Tct																																																																														
IL10	3586	MSKCC	GRCh37	1	206945657	206945657	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	91	567	0	ENST00000423557.1:c.124C>T	p.Arg42Ter	p.R42*	ENST00000423557	NM_000572.2	42	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8338945	8338945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	71	530	0	ENST00000356435.5:c.5356G>A	p.Glu1786Lys	p.E1786K	ENST00000356435		1786	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	29451917	29451917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	103	664	0	ENST00000389048.3:c.2648G>A	p.Trp883Ter	p.W883*	ENST00000389048	NM_004304.4	883	tGg/tAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166769	32166769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	132	727	0	ENST00000375023.3:c.4469G>A	p.Arg1490Gln	p.R1490Q	ENST00000375023	NM_004557.3	1490	cGg/cAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	90	515	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560970	9560970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	55	359	0	ENST00000353224.5:c.812C>T	p.Ser271Leu	p.S271L	ENST00000353224	NM_177990.2	271	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306560	41306560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	106	549	0	ENST00000373198.4:c.1099G>A	p.Glu367Lys	p.E367K	ENST00000373198	NM_133170.3	367	Gag/Aag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641528	18641528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	77	504	0	ENST00000266497.5:c.2527G>A	p.Glu843Lys	p.E843K	ENST00000266497		843	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	29754929	29754929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	95	580	0	ENST00000389048.3:c.1006C>T	p.Pro336Ser	p.P336S	ENST00000389048	NM_004304.4	336	Ccg/Tcg																																																																														
MPL	4352	MSKCC	GRCh37	1	43805779	43805779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	214	658	0	ENST00000372470.3:c.835G>A	p.Asp279Asn	p.D279N	ENST00000372470	NM_005373.2	279	Gac/Aac																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165834	118165834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	62	388	1	ENST00000369448.3:c.344C>T	p.Ser115Phe	p.S115F	ENST00000369448	NM_017709.3	115	tCc/tTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462171	120462171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	172	557	0	ENST00000256646.2:c.5545G>A	p.Glu1849Lys	p.E1849K	ENST00000256646	NM_024408.3	1849	Gaa/Aaa																																																																														
RET	5979	MSKCC	GRCh37	10	43604647	43604648	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	96	571	2	ENST00000355710.3:c.1232_1233delCCinsTT	p.Ser411Phe	p.S411F	ENST00000355710	NM_020975.4	411	tCC/tTT																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851834	63851834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	118	671	0	ENST00000279873.7:c.2612C>T	p.Pro871Leu	p.P871L	ENST00000279873	NM_032199.2	871	cCt/cTt																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771428	112771428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	110	743	0	ENST00000369452.4:c.1601C>T	p.Pro534Leu	p.P534L	ENST00000369452	NM_007373.3	534	cCc/cTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18473955	18473955	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	42	380	0	ENST00000266497.5:c.1197G>A	p.Trp399Ter	p.W399*	ENST00000266497		399	tgG/tgA																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285845	46285845	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	100	524	0	ENST00000334344.6:c.5113C>G	p.Pro1705Ala	p.P1705A	ENST00000334344	NM_152641.2	1705	Cca/Gca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431588	49431588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	115	554	0	ENST00000301067.7:c.9551C>T	p.Ser3184Phe	p.S3184F	ENST00000301067	NM_003482.3	3184	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434841	49434841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	171	889	2	ENST00000301067.7:c.6712C>T	p.Pro2238Ser	p.P2238S	ENST00000301067	NM_003482.3	2238	Ccc/Tcc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623860	28623860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	76	557	0	ENST00000241453.7:c.794G>A	p.Gly265Glu	p.G265E	ENST00000241453	NM_004119.2	265	gGg/gAg																																																																														
MGA	23269	MSKCC	GRCh37	15	42042365	42042365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	114	705	0	ENST00000219905.7:c.6560T>C	p.Val2187Ala	p.V2187A	ENST00000219905	NM_001164273.1	2187	gTt/gCt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680737	88680737	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	132	613	0	ENST00000360948.2:c.520T>C	p.Trp174Arg	p.W174R	ENST00000360948	NM_001012338.2	174	Tgg/Cgg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50826538	50826538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	51	342	0	ENST00000398568.2:c.2263C>T	p.Arg755Ter	p.R755*	ENST00000398568	NM_001042412.1	755	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	108	623	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
NF1	4763	MSKCC	GRCh37	17	29667658	29667658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	69	431	0	ENST00000358273.4:c.7057G>A	p.Asp2353Asn	p.D2353N	ENST00000358273	NM_001042492.2	2353	Gac/Aac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5225776	5225776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	145	665	0	ENST00000357368.4:c.2456C>T	p.Ala819Val	p.A819V	ENST00000357368	NM_002850.3	819	gCt/gTt																																																																														
AXL	558	MSKCC	GRCh37	19	41726639	41726640	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	130	733	1	ENST00000301178.4:c.184_185delGGinsAA	p.Gly62Lys	p.G62K	ENST00000301178	NM_021913.4	62	GGa/AAa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505403	25505403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	69	485	0	ENST00000264709.3:c.355G>A	p.Glu119Lys	p.E119K	ENST00000264709	NM_175629.2	119	Gag/Aag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39216420	39216420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	75	570	1	ENST00000402219.2:c.3382C>T	p.His1128Tyr	p.H1128Y	ENST00000402219	NM_005633.3	1128	Cat/Tat																																																																														
CASP8	841	MSKCC	GRCh37	2	202136259	202136259	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	170	545	0	ENST00000358485.4:c.503C>G	p.Ser168Ter	p.S168*	ENST00000358485	NM_001080125.1	168	tCa/tGa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520166	9520166	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	96	498	0	ENST00000353224.5:c.2103A>T	p.Lys701Asn	p.K701N	ENST00000353224	NM_177990.2	701	aaA/aaT																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546774	9546774	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	52	238	0	ENST00000353224.5:c.1248G>A	p.Trp416Ter	p.W416*	ENST00000353224	NM_177990.2	416	tgG/tgA																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46251019	46251019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	72	488	0	ENST00000371998.3:c.28C>T	p.Pro10Ser	p.P10S	ENST00000371998		10	Cca/Tca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668757	52668757	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	69	579	0	ENST00000394830.3:c.1162C>T	p.Gln388Ter	p.Q388*	ENST00000394830	NM_018313.4	388	Cag/Tag																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190828	185190828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	120	768	1	ENST00000265026.3:c.1709C>T	p.Ser570Phe	p.S570F	ENST00000265026	NM_004721.4	570	tCc/tTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144682	55144682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	52	470	1	ENST00000257290.5:c.2156G>A	p.Ser719Asn	p.S719N	ENST00000257290	NM_006206.4	719	aGc/aAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146590	55146590	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139465754		P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	86	545	0	ENST00000257290.5:c.2264C>T	p.Ser755Phe	p.S755F	ENST00000257290	NM_006206.4	755	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540950	187540950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	54	359	1	ENST00000441802.2:c.6790C>A	p.His2264Asn	p.H2264N	ENST00000441802	NM_005245.3	2264	Cat/Aat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515295	31515295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	95	629	0	ENST00000344624.3:c.1090C>T	p.Arg364Cys	p.R364C	ENST00000344624		364	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112173699	112173699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	53	400	0	ENST00000257430.4:c.2408C>A	p.Thr803Asn	p.T803N	ENST00000257430	NM_000038.5	803	aCc/aAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048652	180048652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	127	589	0	ENST00000261937.6:c.1910G>A	p.Ser637Asn	p.S637N	ENST00000261937	NM_182925.4	637	aGc/aAc																																																																														
IRF4	3662	MSKCC	GRCh37	6	398937	398937	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	79	345	0	ENST00000380956.4:c.745+2T>G		p.X249_splice	ENST00000380956	NM_001195286.1	249																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32169853	32169853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	122	602	0	ENST00000375023.3:c.3755C>G	p.Thr1252Ser	p.T1252S	ENST00000375023	NM_004557.3	1252	aCt/aGt																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748581	43748581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139206878		P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	72	400	0	ENST00000523873.1:c.535C>T	p.Pro179Ser	p.P179S	ENST00000523873		179	Cct/Tct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686811	117686811	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	63	590	0	ENST00000368508.3:c.2906G>A	p.Trp969Ter	p.W969*	ENST00000368508	NM_002944.2	969	tGg/tAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227888	55227889	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	82	492	1	ENST00000275493.2:c.1355_1356delCCinsTT	p.Ser452Phe	p.S452F	ENST00000275493	NM_005228.3	452	tCC/tTT																																																																														
PREX2	80243	MSKCC	GRCh37	8	69103983	69103983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	96	714	0	ENST00000288368.4:c.4373C>T	p.Ser1458Leu	p.S1458L	ENST00000288368	NM_024870.2	1458	tCa/tTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319884	8319884	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	59	453	0	ENST00000356435.5:c.5617T>A	p.Phe1873Ile	p.F1873I	ENST00000356435		1873	Ttc/Atc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484354	8484354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145574906		P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	52	446	0	ENST00000356435.5:c.3178G>A	p.Val1060Ile	p.V1060I	ENST00000356435		1060	Gta/Ata																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499699	8499699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	80	570	2	ENST00000356435.5:c.2270G>A	p.Gly757Asp	p.G757D	ENST00000356435		757	gGt/gAt																																																																														
TEK	7010	MSKCC	GRCh37	9	27209116	27209116	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	68	508	1	ENST00000380036.4:c.2576-3C>T		p.X859_splice	ENST00000380036	NM_000459.3	859																																																																															
CRLF2	64109	MSKCC	GRCh37	X	1325398	1325398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	85	579	2	ENST00000381566.1:c.277G>A	p.Asp93Asn	p.D93N	ENST00000381566		93	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	83	426	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	248	774	1	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	281	972	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932747	49932747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	233	997	4	ENST00000296474.3:c.3124G>A	p.Asp1042Asn	p.D1042N	ENST00000296474	NM_002447.2	1042	Gat/Aat																																																																														
AXL	558	MSKCC	GRCh37	19	41743903	41743903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	199	935	0	ENST00000301178.4:c.838G>A	p.Glu280Lys	p.E280K	ENST00000301178	NM_021913.4	280	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261338	16261338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	225	664	0	ENST00000375759.3:c.8603C>T	p.Ser2868Phe	p.S2868F	ENST00000375759	NM_015001.2	2868	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29556367	29556367	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	245	563	1	ENST00000358273.4:c.2734C>T	p.Gln912Ter	p.Q912*	ENST00000358273	NM_001042492.2	912	Caa/Taa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357483	89357483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	203	774	0	ENST00000301030.4:c.335C>T	p.Ser112Phe	p.S112F	ENST00000301030	NM_001256183.1	112	tCc/tTc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429758	78429758	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	111	331	0	ENST00000370768.2:c.1030C>T	p.Arg344Ter	p.R344*	ENST00000370768	NM_003902.3	344	Cga/Tga																																																																														
HRAS	3265	MSKCC	GRCh37	11	534288	534289	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	160	674	3	ENST00000311189.7:c.34_35delinsAA	p.Gly12Asn	p.G12N	ENST00000311189		12	GGc/AAc																																																																														
ATM	472	MSKCC	GRCh37	11	108115630	108115631	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	205	556	0	ENST00000278616.4:c.778_779delinsTT	p.Pro260Phe	p.P260F	ENST00000278616	NM_000051.3	260	CCc/TTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481358	56481358	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	212	720	1	ENST00000267101.3:c.548-3C>T		p.X183_splice	ENST00000267101	NM_001982.3	183																																																																															
GLI1	2735	MSKCC	GRCh37	12	57863247	57863247	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	82	636	0	ENST00000228682.2:c.1342T>C	p.Cys448Arg	p.C448R	ENST00000228682	NM_005269.2	448	Tgc/Cgc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863415	57863415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	217	823	0	ENST00000228682.2:c.1510G>A	p.Asp504Asn	p.D504N	ENST00000228682	NM_005269.2	504	Gac/Aac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864879	57864879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	206	793	0	ENST00000228682.2:c.2356C>T	p.His786Tyr	p.H786Y	ENST00000228682	NM_005269.2	786	Cac/Tac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28592623	28592623	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	124	660	0	ENST00000241453.7:c.2522A>G	p.Asn841Ser	p.N841S	ENST00000241453	NM_004119.2	841	aAc/aGc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95597967	95597967	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	142	394	0	ENST00000343455.3:c.317T>C	p.Val106Ala	p.V106A	ENST00000343455	NM_177438.2	106	gTt/gCt																																																																														
MGA	23269	MSKCC	GRCh37	15	42028727	42028727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	208	609	0	ENST00000219905.7:c.4265C>T	p.Ser1422Phe	p.S1422F	ENST00000219905	NM_001164273.1	1422	tCc/tTc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707915	43707915	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	230	937	1	ENST00000382044.4:c.4966C>T	p.Arg1656Ter	p.R1656*	ENST00000382044	NM_001141980.1	1656	Cga/Tga																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836386	89836386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	145	538	0	ENST00000389301.3:c.2363C>T	p.Ala788Val	p.A788V	ENST00000389301	NM_000135.2	788	gCc/gTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562745	29562746	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	155	562	1	ENST00000358273.4:c.3825_3826delinsTT	p.Arg1276Ter	p.R1276*	ENST00000358273	NM_001042492.2	1275	ttCCga/ttTTga																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78617569	78617570	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	183	557	1	ENST00000306801.3:c.307_308delinsAA	p.Gly103Asn	p.G103N	ENST00000306801	NM_020761.2	103	GGt/AAt																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257606	19257606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	212	773	7	ENST00000162023.5:c.620G>A	p.Arg207Gln	p.R207Q	ENST00000162023		207	cGg/cAg																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140324	50140324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	244	661	0	ENST00000246792.3:c.217G>A	p.Asp73Asn	p.D73N	ENST00000246792	NM_006270.3	73	Gat/Aat																																																																														
ALK	238	MSKCC	GRCh37	2	29456476	29456476	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	221	820	0	ENST00000389048.3:c.2442G>A	p.Trp814Ter	p.W814*	ENST00000389048	NM_004304.4	814	tgG/tgA																																																																														
ALK	238	MSKCC	GRCh37	2	30143460	30143461	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	53	197	1	ENST00000389048.3:c.65_66delinsAA	p.Gly22Glu	p.G22E	ENST00000389048	NM_004304.4	22	gGG/gAA																																																																														
TOP1	7150	MSKCC	GRCh37	20	39751885	39751885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56111014		P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	239	687	1	ENST00000361337.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000361337	NM_003286.2	749	cGg/cAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445070	89445070	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	50	658	0	ENST00000336596.2:c.1390A>C	p.Asn464His	p.N464H	ENST00000336596	NM_005233.5	464	Aat/Cat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509949	187509949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	87	472	0	ENST00000441802.2:c.13564G>T	p.Gly4522Trp	p.G4522W	ENST00000441802	NM_005245.3	4522	Ggg/Tgg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177939	56177939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	164	638	0	ENST00000399503.3:c.2912C>T	p.Pro971Leu	p.P971L	ENST00000399503	NM_005921.1	971	cCt/cTt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460576	149460576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	196	671	2	ENST00000286301.3:c.61C>T	p.Pro21Ser	p.P21S	ENST00000286301	NM_005211.3	21	Cca/Tca																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672302	30672302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	198	745	0	ENST00000376406.3:c.4658C>T	p.Ser1553Phe	p.S1553F	ENST00000376406	NM_014641.2	1553	tCt/tTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453156	+	missense_variant	Missense_Mutation	DNP	CA	CA	TT			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	152	596	1	ENST00000288602.6:c.1779_1780delinsAA	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	593	ggTGat/ggAAat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860518	151860518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	166	619	0	ENST00000262189.6:c.10144C>T	p.Arg3382Trp	p.R3382W	ENST00000262189	NM_170606.2	3382	Cgg/Tgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046421	69046421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	176	759	0	ENST00000288368.4:c.3894G>A	p.Met1298Ile	p.M1298I	ENST00000288368	NM_024870.2	1298	atG/atA																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978703	70978703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	345	755	0	ENST00000276594.2:c.950G>A	p.Gly317Glu	p.G317E	ENST00000276594	NM_024504.3	317	gGa/gAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341139	8341139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	340	698	0	ENST00000356435.5:c.5077G>A	p.Gly1693Arg	p.G1693R	ENST00000356435		1693	Gga/Aga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87339172	87339172	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	460	575	0	ENST00000277120.3:c.754A>G	p.Ile252Val	p.I252V	ENST00000277120		252	Ata/Gta																																																																														
SYK	6850	MSKCC	GRCh37	9	93637010	93637010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	212	587	2	ENST00000375746.1:c.1060G>A	p.Asp354Asn	p.D354N	ENST00000375746	NM_001174167.1	354	Gac/Aac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401796	139401796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	443	825	1	ENST00000277541.6:c.3604C>T	p.Pro1202Ser	p.P1202S	ENST00000277541	NM_017617.3	1202	Ccc/Tcc																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152858164	152858164	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	261	506	0	ENST00000406277.2:c.451C>T	p.Gln151Ter	p.Q151*	ENST00000406277	NM_152274.4	151	Cag/Tag																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149238709	149238711	+	missense_variant	Missense_Mutation	ONP	GTC	GTC	TTT			P-0015832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	276	869	2	ENST00000360632.3:c.1084_1086delinsAAA	p.Asp362Lys	p.D362K	ENST00000360632	NM_015472.4	362	GAC/AAA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			325	26	213	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			645	130	493	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221981	1221981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			933	134	610	0	ENST00000326873.7:c.896C>T	p.Ser299Phe	p.S299F	ENST00000326873	NM_000455.4	299	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94124437	94124437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			663	69	525	0	ENST00000369303.4:c.146C>T	p.Ser49Phe	p.S49F	ENST00000369303	NM_004440.3	49	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112128185	112128185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			920	121	586	1	ENST00000257430.4:c.688C>T	p.Arg230Cys	p.R230C	ENST00000257430	NM_000038.5	230	Cgt/Tgt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95556921	95556921	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			889	120	555	0	ENST00000343455.3:c.5683C>T	p.Arg1895Ter	p.R1895*	ENST00000343455	NM_177438.2	1895	Cga/Tga																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317520	1317520	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	151	746	0				ENST00000381566																																																																																	
MSI1	4440	MSKCC	GRCh37	12	120800928	120800928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			732	177	667	0	ENST00000257552.2:c.320G>A	p.Arg107Gln	p.R107Q	ENST00000257552	NM_002442.3	107	cGa/cAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881009	37881009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			783	151	742	0	ENST00000269571.5:c.2338C>T	p.Pro780Ser	p.P780S	ENST00000269571		780	Cca/Tca																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966462	25966462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			867	100	581	0	ENST00000435504.4:c.2744C>T	p.Pro915Leu	p.P915L	ENST00000435504		915	cCa/cTa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561234	9561234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			720	133	448	0	ENST00000353224.5:c.548C>T	p.Ser183Phe	p.S183F	ENST00000353224	NM_177990.2	183	tCt/tTt																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62320915	62320915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	164	847	0	ENST00000508582.2:c.2011C>T	p.Pro671Ser	p.P671S	ENST00000508582		671	Ccg/Tcg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656786	45656786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			827	123	629	1	ENST00000407780.3:c.370G>A	p.Glu124Lys	p.E124K	ENST00000407780	NM_001283052.1	124	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41546089	41546089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			916	134	603	0	ENST00000263253.7:c.2704C>T	p.Pro902Ser	p.P902S	ENST00000263253	NM_001429.3	902	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485307	8485307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			775	115	574	1	ENST00000356435.5:c.3073C>T	p.His1025Tyr	p.H1025Y	ENST00000356435		1025	Cat/Tat																																																																														
ATRX	546	MSKCC	GRCh37	X	76907743	76907743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			438	139	294	0	ENST00000373344.5:c.4418C>T	p.Pro1473Leu	p.P1473L	ENST00000373344	NM_000489.3	1473	cCt/cTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29562791	29562791	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			494	75	356	0	ENST00000358273.4:c.3870+1G>A		p.X1290_splice	ENST00000358273	NM_001042492.2	1290																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400679	56400679	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			618	87	429	0	ENST00000348428.3:c.1273A>G	p.Met425Val	p.M425V	ENST00000348428	NM_006785.3	425	Atg/Gtg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906474	50906474	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			958	123	752	0	ENST00000440232.2:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000440232	NM_002691.3	379	Cag/Tag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525024	9525024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			768	109	519	0	ENST00000353224.5:c.1861G>A	p.Gly621Arg	p.G621R	ENST00000353224	NM_177990.2	621	Ggg/Agg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624897	9624897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			766	117	541	1	ENST00000353224.5:c.80C>T	p.Pro27Leu	p.P27L	ENST00000353224	NM_177990.2	27	cCa/cTa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131953835	131953835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			761	118	495	0	ENST00000265335.6:c.3238G>A	p.Gly1080Ser	p.G1080S	ENST00000265335		1080	Ggt/Agt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974312	93974312	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			721	116	534	0	ENST00000369303.4:c.1742G>A	p.Arg581Lys	p.R581K	ENST00000369303	NM_004440.3	581	aGg/aAg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265590	152265590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			600	93	457	0	ENST00000206249.3:c.1043A>G	p.Asn348Ser	p.N348S	ENST00000206249	NM_000125.3	348	aAc/aGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528477	157528477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			677	112	511	1	ENST00000346085.5:c.6202C>T	p.Pro2068Ser	p.P2068S	ENST00000346085	NM_020732.3	2068	Cca/Tca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98248125	98248125	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015881-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			890	116	556	0	ENST00000331920.6:c.426T>A	p.Tyr142Ter	p.Y142*	ENST00000331920	NM_000264.3	142	taT/taA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	148	385	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	213	549	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562459	95562459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	94	331	0	ENST00000343455.3:c.4798G>A	p.Glu1600Lys	p.E1600K	ENST00000343455	NM_177438.2	1600	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295180	15295180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	340	757	1	ENST00000263388.2:c.2492G>A	p.Gly831Glu	p.G831E	ENST00000263388	NM_000435.2	831	gGg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971121	21971121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	172	423	0	ENST00000361570.3:c.403C>T	p.Pro135Ser	p.P135S	ENST00000361570	NM_058195.3	135	Ccg/Tcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971121	21971121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	172	423	0	ENST00000361570.3:c.403C>T	p.Pro135Ser	p.P135S	ENST00000361570	NM_058195.3	135	Ccg/Tcg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986544	36986544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	201	680	0	ENST00000354822.5:c.1145C>T	p.Ser382Phe	p.S382F	ENST00000354822	NM_001079668.2	382	tCc/tTc																																																																														
PGR	5241	MSKCC	GRCh37	11	100912815	100912815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	132	367	0	ENST00000325455.5:c.2507G>A	p.Arg836Gln	p.R836Q	ENST00000325455	NM_001202474.3	836	cGa/cAa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431425	121431425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	182	546	1	ENST00000257555.6:c.629C>T	p.Ser210Phe	p.S210F	ENST00000257555		210	tCc/tTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7267773	7267773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	263	550	0	ENST00000302850.5:c.235C>T	p.Pro79Ser	p.P79S	ENST00000302850	NM_000208.2	79	Ccc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979257	93979257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	117	352	1	ENST00000369303.4:c.1571G>A	p.Gly524Glu	p.G524E	ENST00000369303	NM_004440.3	524	gGa/gAa																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683748	162683748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	154	508	1	ENST00000366898.1:c.221G>A	p.Trp74Ter	p.W74*	ENST00000366898	NM_004562.2	74	tGg/tAg																																																																														
AXL	558	MSKCC	GRCh37	19	41736934	41736934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	72	543	0	ENST00000301178.4:c.649C>T	p.Arg217Cys	p.R217C	ENST00000301178	NM_021913.4	217	Cgc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	49027167	49027168	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	114	415	1	ENST00000267163.4:c.1734_1735delCCinsTT	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	578	gaCCga/gaTTga																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143226689	143226689	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs149208667		P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	99	274	0	ENST00000262992.4:c.425G>A	p.Arg142Gln	p.R142Q	ENST00000262992	NM_001101669.1	142	cGa/cAa																																																																														
ALK	238	MSKCC	GRCh37	2	29754979	29754979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	132	475	1	ENST00000389048.3:c.956C>T	p.Ser319Phe	p.S319F	ENST00000389048	NM_004304.4	319	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087521	27087521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	186	527	1	ENST00000324856.7:c.2095C>T	p.Pro699Ser	p.P699S	ENST00000324856	NM_006015.4	699	Cct/Tct																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120465361	120465361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	154	390	0	ENST00000256646.2:c.4900C>T	p.Gln1634Ter	p.Q1634*	ENST00000256646	NM_024408.3	1634	Caa/Taa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074204	8074205	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	81	338	2	ENST00000377482.5:c.454_455delinsTT	p.Pro152Phe	p.P152F	ENST00000377482	NM_018948.3	152	CCt/TTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261476	16261477	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	162	450	0	ENST00000375759.3:c.8741_8742delinsTT	p.Pro2914Leu	p.P2914L	ENST00000375759	NM_015001.2	2914	cCC/cTT																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599091	28599091	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	163	526	0	ENST00000253063.3:c.538-1G>A		p.X180_splice	ENST00000253063	NM_031459.4	180																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36938134	36938134	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	206	528	0	ENST00000361632.4:c.827A>T	p.Glu276Val	p.E276V	ENST00000361632		276	gAa/gTa																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695860	117695860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	241	581	0	ENST00000369458.3:c.577G>A	p.Glu193Lys	p.E193K	ENST00000369458	NM_024626.3	193	Gaa/Aaa																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695889	117695889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	160	557	1	ENST00000369458.3:c.548C>T	p.Ser183Phe	p.S183F	ENST00000369458	NM_024626.3	183	tCc/tTc																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699409	117699409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	168	509	0	ENST00000369458.3:c.232G>A	p.Gly78Ser	p.G78S	ENST00000369458	NM_024626.3	78	Ggc/Agc																																																																														
MDM4	4194	MSKCC	GRCh37	1	204507356	204507356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	152	462	0	ENST00000367182.3:c.431C>T	p.Ser144Phe	p.S144F	ENST00000367182	NM_001278516.1	144	tCc/tTc																																																																														
PARP1	142	MSKCC	GRCh37	1	226555928	226555929	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	161	476	1	ENST00000366794.5:c.2248_2249delinsTT	p.Pro750Leu	p.P750L	ENST00000366794	NM_001618.3	750	CCg/TTg																																																																														
FH	2271	MSKCC	GRCh37	1	241667524	241667524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	95	214	1	ENST00000366560.3:c.926C>T	p.Pro309Leu	p.P309L	ENST00000366560	NM_000143.3	309	cCg/cTg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243675628	243675628	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	102	262	0	ENST00000263826.5:c.1352A>T	p.Lys451Ile	p.K451I	ENST00000263826	NM_005465.4	451	aAa/aTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653834	89653836	+	frameshift_variant	Frame_Shift_Del	DEL	CGT	CGT	TG			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	103	399	1	ENST00000371953.3:c.132_134delinsTG	p.Val45AspfsTer9	p.V45Dfs*9	ENST00000371953	NM_000314.4	44	ggCGTa/ggTGa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910755	114910755	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	146	404	0	ENST00000543371.1:c.876-2A>C		p.X292_splice	ENST00000543371	NM_001198531.1	292																																																																															
YAP1	10413	MSKCC	GRCh37	11	102100657	102100657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	92	202	0	ENST00000282441.5:c.1501C>T	p.Leu501Phe	p.L501F	ENST00000282441	NM_001130145.2	501	Ctt/Ttt																																																																														
ATM	472	MSKCC	GRCh37	11	108142079	108142079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	170	460	0	ENST00000278616.4:c.3023C>T	p.Ser1008Phe	p.S1008F	ENST00000278616	NM_000051.3	1008	tCt/tTt																																																																														
CBL	867	MSKCC	GRCh37	11	119149405	119149406	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	111	366	0	ENST00000264033.4:c.1413_1414delinsAA	p.Glu472Lys	p.E472K	ENST00000264033	NM_005188.3	471	aaGGaa/aaAAaa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21629845	21629845	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	128	468	0	ENST00000421138.2:c.949G>T	p.Gly317Ter	p.G317*	ENST00000421138		317	Gga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243466	46243467	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	126	403	0	ENST00000334344.6:c.1819_1820delinsTT	p.Pro607Phe	p.P607F	ENST00000334344	NM_152641.2	607	CCc/TTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434564	49434564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	200	485	0	ENST00000301067.7:c.6989C>T	p.Pro2330Leu	p.P2330L	ENST00000301067	NM_003482.3	2330	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444070	49444070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	145	383	2	ENST00000301067.7:c.3301C>T	p.Leu1101Phe	p.L1101F	ENST00000301067	NM_003482.3	1101	Ctt/Ttt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865536	57865537	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	201	558	1	ENST00000228682.2:c.3013_3014delinsAA	p.Gly1005Lys	p.G1005K	ENST00000228682	NM_005269.2	1005	GGa/AAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115110013	115110013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	192	766	1	ENST00000257566.3:c.1865C>T	p.Ser622Leu	p.S622L	ENST00000257566	NM_016569.3	622	tCg/tTg																																																																														
SETD8	387893	MSKCC	GRCh37	12	123879672	123879673	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	17	159	0	ENST00000330479.4:c.368_369delinsGA	p.Pro123Arg	p.P123R	ENST00000330479	NM_020382.3	123	cCC/cGA																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336239	73336240	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	72	235	0	ENST00000377767.4:c.2163_2164delinsAA	p.Ala722Thr	p.A722T	ENST00000377767	NM_014953.3	721	ttGGct/ttAAct																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422150	81422151	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	123	466	2	ENST00000298171.2:c.126_127delinsAA	p.Asp43Asn	p.D43N	ENST00000298171	NM_000369.2	42	aaGGat/aaAAat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562638	95562638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	124	329	0	ENST00000343455.3:c.4619G>A	p.Gly1540Glu	p.G1540E	ENST00000343455	NM_177438.2	1540	gGa/gAa																																																																														
AKT1	207	MSKCC	GRCh37	14	105242038	105242038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	198	628	0	ENST00000349310.3:c.386C>T	p.Ser129Leu	p.S129L	ENST00000349310	NM_001014432.1	129	tCa/tTa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479850	67479850	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	174	388	0	ENST00000327367.4:c.1154+3C>T		p.X385_splice	ENST00000327367	NM_005902.3	385																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88476403	88476403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	142	336	1	ENST00000360948.2:c.1729C>T	p.Pro577Ser	p.P577S	ENST00000360948	NM_001012338.2	577	Ccc/Tcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786816	3786817	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	78	277	0	ENST00000262367.5:c.4395-1_4395delinsAA		p.X1465_splice	ENST00000262367	NM_004380.2	1465																																																																															
CYLD	1540	MSKCC	GRCh37	16	50784103	50784103	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	133	411	0	ENST00000398568.2:c.494T>C	p.Val165Ala	p.V165A	ENST00000398568	NM_001042412.1	165	gTt/gCt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813663	50813663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	195	569	0	ENST00000398568.2:c.1217C>T	p.Ser406Leu	p.S406L	ENST00000398568	NM_001042412.1	406	tCa/tTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829095	72829095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	170	394	0	ENST00000268489.5:c.7486C>T	p.Gln2496Ter	p.Q2496*	ENST00000268489	NM_006885.3	2496	Cag/Tag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805962	89805962	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	123	390	0	ENST00000389301.3:c.3935-1G>A		p.X1312_splice	ENST00000389301	NM_000135.2	1312																																																																															
FANCA	2175	MSKCC	GRCh37	16	89816244	89816244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	173	558	0	ENST00000389301.3:c.3133G>A	p.Glu1045Lys	p.E1045K	ENST00000389301	NM_000135.2	1045	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577146	7577170	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGATTACCACTACTCAGGATAGGA	TAGATTACCACTACTCAGGATAGGA	-			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	177	522	0	ENST00000269305.4:c.783-15_792del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15968969	15968969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	112	371	0	ENST00000268712.3:c.4781C>T	p.Thr1594Ile	p.T1594I	ENST00000268712	NM_006311.3	1594	aCt/aTt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369203	40369203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	189	495	0	ENST00000293328.3:c.1355G>A	p.Gly452Glu	p.G452E	ENST00000293328	NM_012448.3	452	gGa/gAa																																																																														
BCL2	596	MSKCC	GRCh37	18	60985422	60985423	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	199	566	2	ENST00000333681.4:c.477_478delinsAA	p.Glu160Lys	p.E160K	ENST00000333681		159	gtGGag/gtAAag																																																																														
STK11	6794	MSKCC	GRCh37	19	1226549	1226549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	261	649	0	ENST00000326873.7:c.1205C>T	p.Thr402Ile	p.T402I	ENST00000326873	NM_000455.4	402	aCc/aTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5219985	5219986	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	230	606	1	ENST00000357368.4:c.3729_3730delinsTT	p.Leu1244Phe	p.L1244F	ENST00000357368	NM_002850.3	1243	gtCCtc/gtTTtc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292550	15292550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	354	655	0	ENST00000263388.2:c.2629C>T	p.Pro877Ser	p.P877S	ENST00000263388	NM_000435.2	877	Cct/Tct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212363	36212363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	191	585	1	ENST00000222270.7:c.2114C>T	p.Pro705Leu	p.P705L	ENST00000222270	NM_014727.1	705	cCt/cTt																																																																														
AXL	558	MSKCC	GRCh37	19	41765671	41765672	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	163	586	1	ENST00000301178.4:c.2547_2548delinsTA	p.Lys849_Asp850delinsAsnAsn	p.K849_D850delinsNN	ENST00000301178	NM_021913.4	849	aaGGat/aaTAat																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25497937	25497937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	175	403	1	ENST00000264709.3:c.512G>A	p.Arg171Gln	p.R171Q	ENST00000264709	NM_175629.2	171	cGg/cAg																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96919762	96919763	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	153	462	2	ENST00000258439.3:c.500_501delinsTT	p.Ser167Phe	p.S167F	ENST00000258439	NM_001193304.2	167	tCC/tTT																																																																														
CASP8	841	MSKCC	GRCh37	2	202137382	202137382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	91	288	0	ENST00000358485.4:c.610G>A	p.Glu204Lys	p.E204K	ENST00000358485	NM_001080125.1	204	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426789	212426789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	139	318	0	ENST00000342788.4:c.2326G>A	p.Asp776Asn	p.D776N	ENST00000342788	NM_005235.2	776	Gat/Aat																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660482	227660483	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	102	353	0	ENST00000305123.5:c.2972_2973delinsTT	p.Thr991Ile	p.T991I	ENST00000305123	NM_005544.2	991	aCC/aTT																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660999	227660999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	133	350	0	ENST00000305123.5:c.2456G>A	p.Gly819Glu	p.G819E	ENST00000305123	NM_005544.2	819	gGa/gAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41489064	41489064	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	139	414	0	ENST00000263253.7:c.56C>G	p.Ser19Ter	p.S19*	ENST00000263253	NM_001429.3	19	tCa/tGa																																																																														
EP300	2033	MSKCC	GRCh37	22	41566485	41566486	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	80	460	2	ENST00000263253.7:c.4362_4363delinsTT	p.Gln1455Ter	p.Q1455*	ENST00000263253	NM_001429.3	1454	gaCCag/gaTTag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280636	41280636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	273	453	1	ENST00000349496.5:c.2149C>T	p.Arg717Cys	p.R717C	ENST00000349496	NM_001904.3	717	Cgt/Tgt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588805	52588805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	292	504	0	ENST00000394830.3:c.4223C>T	p.Pro1408Leu	p.P1408L	ENST00000394830	NM_018313.4	1408	cCt/cTt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71037150	71037150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	167	260	0	ENST00000318789.4:c.1141C>T	p.Gln381Ter	p.Q381*	ENST00000318789	NM_032682.5	381	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259078	89259079	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	167	279	1	ENST00000336596.2:c.222_223delinsAA	p.Met74_Asp75delinsIleAsn	p.M74_D75delinsIN	ENST00000336596	NM_005233.5	74	atGGac/atAAac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807135	1807135	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	208	631	0	ENST00000260795.2:c.1466C>G	p.Ala489Gly	p.A489G	ENST00000260795		489	gCg/gGg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139861	55139861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	113	311	1	ENST00000257290.5:c.1522G>A	p.Gly508Arg	p.G508R	ENST00000257290	NM_006206.4	508	Gga/Aga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530473	187530473	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	71	267	0	ENST00000441802.2:c.10070T>G	p.Val3357Gly	p.V3357G	ENST00000441802	NM_005245.3	3357	gTt/gGt																																																																														
MSH3	4437	MSKCC	GRCh37	5	80169042	80169043	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	144	501	3	ENST00000265081.6:c.3238_3239delinsAA	p.Gly1080Lys	p.G1080K	ENST00000265081	NM_002439.4	1080	GGa/AAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659171	86659171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	44	117	0	ENST00000274376.6:c.1460G>A	p.Gly487Glu	p.G487E	ENST00000274376	NM_002890.2	487	gGa/gAa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138197274	138197274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	105	220	0	ENST00000237289.4:c.776C>T	p.Pro259Leu	p.P259L	ENST00000237289	NM_001270507.1	259	cCc/cTc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202323	138202324	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	149	471	0	ENST00000237289.4:c.2240_2241delinsTT	p.Ala747Val	p.A747V	ENST00000237289	NM_001270507.1	747	gCC/gTT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508970	106508970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	119	337	0	ENST00000359195.3:c.964G>A	p.Glu322Lys	p.E322K	ENST00000359195	NM_002649.2	322	Gag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513383	106513383	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	101	261	0	ENST00000359195.3:c.2287G>A	p.Val763Ile	p.V763I	ENST00000359195	NM_002649.2	763	Gtt/Att																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874719	151874719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	116	363	0	ENST00000262189.6:c.7819C>T	p.Pro2607Ser	p.P2607S	ENST00000262189	NM_170606.2	2607	Ccc/Tcc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271782	38271782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	311	506	0	ENST00000425967.3:c.2167G>A	p.Glu723Lys	p.E723K	ENST00000425967	NM_001174067.1	723	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499843	8499844	+	splice_region_variant,intron_variant	Splice_Region	DNP	GG	GG	AA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	104	350	3	ENST00000356435.5:c.2129-4_2129-3delinsTT		p.X710_splice	ENST00000356435		710																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8500913	8500913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	147	392	0	ENST00000356435.5:c.1969G>A	p.Asp657Asn	p.D657N	ENST00000356435		657	Gac/Aac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518043	8518043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	120	355	0	ENST00000356435.5:c.1348G>A	p.Gly450Arg	p.G450R	ENST00000356435		450	Gga/Aga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633459	8633459	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	91	273	0	ENST00000356435.5:c.211-1G>A		p.X71_splice	ENST00000356435		71																																																																															
ABL1	25	MSKCC	GRCh37	9	133750355	133750355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	211	476	0	ENST00000318560.5:c.1186C>T	p.His396Tyr	p.H396Y	ENST00000318560	NM_005157.4	396	Cat/Tat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391285	139391286	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	253	747	1	ENST00000277541.6:c.6905_6906delinsAT	p.Thr2302Asn	p.T2302N	ENST00000277541	NM_017617.3	2302	aCC/aAT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418372	139418373	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	210	692	3	ENST00000277541.6:c.199_200delinsTT	p.Pro67Phe	p.P67F	ENST00000277541	NM_017617.3	67	CCc/TTc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932645	39932645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	279	343	1	ENST00000378444.4:c.1954C>T	p.Pro652Ser	p.P652S	ENST00000378444	NM_001123385.1	652	Ccc/Tcc																																																																														
ATRX	546	MSKCC	GRCh37	X	76776282	76776282	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	226	295	0	ENST00000373344.5:c.7184T>G	p.Leu2395Trp	p.L2395W	ENST00000373344	NM_000489.3	2395	tTg/tGg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	283	632	1	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	171	529	0				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9858517	9858517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	216	484	1	ENST00000330684.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000330684	NM_001134407.1	962	Gaa/Aaa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170021	32170021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	162	718	2	ENST00000375023.3:c.3587G>A	p.Gly1196Glu	p.G1196E	ENST00000375023	NM_004557.3	1196	gGa/gAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	72	488	0	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498379	89498379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	46	243	0	ENST00000336596.2:c.2351G>A	p.Gly784Glu	p.G784E	ENST00000336596	NM_005233.5	784	gGg/gAg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	247	676	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979257	93979257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	145	499	0	ENST00000369303.4:c.1571G>A	p.Gly524Glu	p.G524E	ENST00000369303	NM_004440.3	524	gGa/gAa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146499	185146499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35266179		P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	216	512	0	ENST00000265026.3:c.130G>A	p.Glu44Lys	p.E44K	ENST00000265026	NM_004721.4	44	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	211	551	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94124437	94124437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	143	516	2	ENST00000369303.4:c.146C>T	p.Ser49Phe	p.S49F	ENST00000369303	NM_004440.3	49	tCc/tTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81372669	81372669	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	58	273	1	ENST00000222390.5:c.865G>A	p.Ala289Thr	p.A289T	ENST00000222390	NM_000601.4	289	Gct/Act																																																																														
MPL	4352	MSKCC	GRCh37	1	43805052	43805052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs6088		P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	297	674	4	ENST00000372470.3:c.502G>A	p.Glu168Lys	p.E168K	ENST00000372470	NM_005373.2	168	Gaa/Aaa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149440464	149440464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	241	681	1	ENST00000286301.3:c.1930G>A	p.Glu644Lys	p.E644K	ENST00000286301	NM_005211.3	644	Gag/Aag																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939191	36939191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	273	668	0	ENST00000361632.4:c.518C>T	p.Ser173Phe	p.S173F	ENST00000361632		173	tCc/tTc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948777	71948778	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	286	783	3	ENST00000298229.2:c.3489_3490delCCinsTT	p.Arg1164Trp	p.R1164W	ENST00000298229	NM_001567.3	1163	ggCCgg/ggTTgg																																																																														
ATM	472	MSKCC	GRCh37	11	108117818	108117818	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	97	537	1	ENST00000278616.4:c.1029A>T	p.Glu343Asp	p.E343D	ENST00000278616	NM_000051.3	343	gaA/gaT																																																																														
ATM	472	MSKCC	GRCh37	11	108151894	108151894	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	52	345	0	ENST00000278616.4:c.3575A>C	p.Lys1192Thr	p.K1192T	ENST00000278616	NM_000051.3	1192	aAg/aCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444933	49444933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	242	616	1	ENST00000301067.7:c.2533C>T	p.Arg845Trp	p.R845W	ENST00000301067	NM_003482.3	845	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495418	56495419	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	140	692	2	ENST00000267101.3:c.3608_3609delGGinsAA	p.Arg1203Lys	p.R1203K	ENST00000267101	NM_001982.3	1203	aGG/aAA																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437349	110437350	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TA			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	92	150	2	ENST00000375856.3:c.1051_1052delCCinsTA	p.Pro351Ter	p.P351*	ENST00000375856	NM_003749.2	351	CCg/TAg																																																																														
MGA	23269	MSKCC	GRCh37	15	41989144	41989144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	222	590	1	ENST00000219905.7:c.1936C>T	p.Pro646Ser	p.P646S	ENST00000219905	NM_001164273.1	646	Cct/Tct																																																																														
MGA	23269	MSKCC	GRCh37	15	42003311	42003311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	232	601	0	ENST00000219905.7:c.2848C>T	p.Gln950Ter	p.Q950*	ENST00000219905	NM_001164273.1	950	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828995	72828995	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	287	724	0	ENST00000268489.5:c.7586C>G	p.Pro2529Arg	p.P2529R	ENST00000268489	NM_006885.3	2529	cCc/cGc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37649074	37649074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	112	553	0	ENST00000447079.4:c.2179T>C	p.Phe727Leu	p.F727L	ENST00000447079	NM_015083.1	727	Ttt/Ctt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231358	5231359	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	262	641	1	ENST00000357368.4:c.2117_2118delCCinsTT	p.Pro706Leu	p.P706L	ENST00000357368	NM_002850.3	706	cCC/cTT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019202	31019202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	248	600	0	ENST00000375687.4:c.797C>T	p.Ala266Val	p.A266V	ENST00000375687	NM_015338.5	266	gCc/gTc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713891	30713891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	103	526	0	ENST00000359013.4:c.1291C>T	p.Pro431Ser	p.P431S	ENST00000359013	NM_001024847.2	431	Cct/Tct																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259233	89259233	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	97	450	0	ENST00000336596.2:c.377A>T	p.Glu126Val	p.E126V	ENST00000336596	NM_005233.5	126	gAg/gTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968279	134968279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	141	606	1	ENST00000398015.3:c.2792G>A	p.Ser931Asn	p.S931N	ENST00000398015	NM_004441.4	931	aGc/aAc																																																																														
ATR	545	MSKCC	GRCh37	3	142268354	142268354	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	53	437	0	ENST00000350721.4:c.3138delA	p.Asp1047MetfsTer3	p.D1047Mfs*3	ENST00000350721	NM_001184.3	1046	aaA/aa																																																																														
TP63	8626	MSKCC	GRCh37	3	189587139	189587139	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	107	525	0	ENST00000264731.3:c.1156C>T	p.Gln386Ter	p.Q386*	ENST00000264731	NM_003722.4	386	Cag/Tag																																																																														
KIT	3815	MSKCC	GRCh37	4	55598145	55598146	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	156	485	0	ENST00000288135.5:c.2342_2343delCTinsTA	p.Ala781Val	p.A781V	ENST00000288135	NM_000222.2	781	gCT/gTA																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258970	153258970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	72	279	0	ENST00000281708.4:c.845C>T	p.Ser282Leu	p.S282L	ENST00000281708	NM_033632.3	282	tCa/tTa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867441	35867441	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	62	417	0	ENST00000303115.3:c.255C>G	p.Phe85Leu	p.F85L	ENST00000303115	NM_002185.3	85	ttC/ttG																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753370	57753370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	75	465	0	ENST00000274289.3:c.754C>T	p.Leu252Phe	p.L252F	ENST00000274289	NM_006622.3	252	Ctc/Ttc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721024	176721024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	89	445	0	ENST00000439151.2:c.6655C>T	p.Arg2219Cys	p.R2219C	ENST00000439151	NM_022455.4	2219	Cgt/Tgt																																																																														
STK19	8859	MSKCC	GRCh37	6	31946722	31946722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	281	672	0	ENST00000375331.2:c.610G>A	p.Gly204Ser	p.G204S	ENST00000375331	NM_004197.1	204	Ggc/Agc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798412	32798412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	295	630	2	ENST00000374899.4:c.1444G>A	p.Asp482Asn	p.D482N	ENST00000374899	NM_018833.2	482	Gac/Aac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662624	117662624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	198	542	0	ENST00000368508.3:c.4841C>T	p.Pro1614Leu	p.P1614L	ENST00000368508	NM_002944.2	1614	cCa/cTa																																																																														
HGF	3082	MSKCC	GRCh37	7	81332037	81332037	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	139	412	1	ENST00000222390.5:c.2047A>G	p.Lys683Glu	p.K683E	ENST00000222390	NM_000601.4	683	Aaa/Gaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140500166	140500166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	195	836	0	ENST00000288602.6:c.976A>G	p.Ile326Val	p.I326V	ENST00000288602	NM_004333.4	326	Att/Gtt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845196	151845196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	216	518	0	ENST00000262189.6:c.13816G>A	p.Asp4606Asn	p.D4606N	ENST00000262189	NM_170606.2	4606	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69032438	69032438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	175	678	1	ENST00000288368.4:c.3512C>T	p.Ser1171Leu	p.S1171L	ENST00000288368	NM_024870.2	1171	tCa/tTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971187	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCTGC	GGCGCTGC	-			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	191	438	0	ENST00000304494.5:c.164_171delGCAGCGCC	p.Gly55AlafsTer62	p.G55Afs*62	ENST00000304494	NM_000077.4	55	gGCAGCGCC/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971187	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCTGC	GGCGCTGC	-			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	191	438	0	ENST00000304494.5:c.164_171delGCAGCGCC	p.Gly55AlafsTer62	p.G55Afs*62	ENST00000304494	NM_000077.4	55	gGCAGCGCC/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971187	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCTGC	GGCGCTGC	-			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	191	438	0	ENST00000304494.5:c.164_171delGCAGCGCC	p.Gly55AlafsTer62	p.G55Afs*62	ENST00000304494	NM_000077.4	55	gGCAGCGCC/g																																																																														
SYK	6850	MSKCC	GRCh37	9	93636502	93636502	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199612745		P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	124	465	0	ENST00000375746.1:c.932G>A	p.Gly311Glu	p.G311E	ENST00000375746	NM_001174167.1	311	gGg/gAg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249666	110249666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	162	903	1	ENST00000374672.4:c.1009C>T	p.Pro337Ser	p.P337S	ENST00000374672	NM_004235.4	337	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	345	453	0				ENST00000310581	NM_198253.2																																																																																
PAK7	57144	MSKCC	GRCh37	20	9560947	9560947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	92	340	0	ENST00000353224.5:c.835C>A	p.Gln279Lys	p.Q279K	ENST00000353224	NM_177990.2	279	Cag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480320	56480320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	136	341	0	ENST00000267101.3:c.427C>A	p.Leu143Met	p.L143M	ENST00000267101	NM_001982.3	143	Ctg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	163	442	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	163	442	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	163	442	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	292	473	0	ENST00000269305.4:c.775G>C	p.Asp259His	p.D259H	ENST00000269305	NM_001126112.2	259	Gac/Cac																																																																														
TSC2	7249	MSKCC	GRCh37	16	2120523	2120523	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	417	734	1	ENST00000219476.3:c.1783C>T	p.Gln595Ter	p.Q595*	ENST00000219476	NM_000548.3	595	Cag/Tag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807335	1807335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	329	740	0	ENST00000260795.2:c.1584G>A	p.Met528Ile	p.M528I	ENST00000260795		528	atG/atA																																																																														
RHOA	387	MSKCC	GRCh37	3	49397710	49397710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	182	574	1	ENST00000418115.1:c.514G>A	p.Glu172Lys	p.E172K	ENST00000418115	NM_001664.2	172	Gaa/Aaa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721082	61721082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	626	424	0	ENST00000401558.2:c.1192C>G	p.Gln398Glu	p.Q398E	ENST00000401558	NM_003400.3	398	Caa/Gaa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52722950	52722950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	144	453	0	ENST00000322088.6:c.1135G>C	p.Glu379Gln	p.E379Q	ENST00000322088	NM_014225.5	379	Gag/Cag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004922	150004922	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	59	372	0	ENST00000253339.5:c.1303C>G	p.Gln435Glu	p.Q435E	ENST00000253339		435	Cag/Gag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16235913	16235913	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	139	443	0	ENST00000375759.3:c.979G>C	p.Glu327Gln	p.E327Q	ENST00000375759	NM_015001.2	327	Gaa/Caa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437694	49437694	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	281	688	0	ENST00000301067.7:c.5276G>C	p.Arg1759Pro	p.R1759P	ENST00000301067	NM_003482.3	1759	cGc/cCc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426823	121426823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	51	441	0	ENST00000257555.6:c.514G>C	p.Glu172Gln	p.E172Q	ENST00000257555		172	Gag/Cag																																																																														
TSHR	7253	MSKCC	GRCh37	14	81558955	81558955	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	117	380	1	ENST00000298171.2:c.545+3G>A		p.X182_splice	ENST00000298171	NM_000369.2	182																																																																															
MGA	23269	MSKCC	GRCh37	15	42054409	42054409	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	63	420	0	ENST00000219905.7:c.7593G>C	p.Lys2531Asn	p.K2531N	ENST00000219905	NM_001164273.1	2531	aaG/aaC																																																																														
TSC2	7249	MSKCC	GRCh37	16	2124305	2124305	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	358	718	0	ENST00000219476.3:c.2460C>G	p.Ile820Met	p.I820M	ENST00000219476	NM_000548.3	820	atC/atG																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130277	2130277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	400	628	0	ENST00000219476.3:c.3509C>T	p.Ser1170Leu	p.S1170L	ENST00000219476	NM_000548.3	1170	tCa/tTa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646399	23646399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	65	512	0	ENST00000261584.4:c.1468C>T	p.Pro490Ser	p.P490S	ENST00000261584	NM_024675.3	490	Ccc/Tcc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646419	23646419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	64	548	0	ENST00000261584.4:c.1448C>T	p.Ser483Leu	p.S483L	ENST00000261584	NM_024675.3	483	tCa/tTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991329	72991329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	58	416	0	ENST00000268489.5:c.2716C>G	p.Leu906Val	p.L906V	ENST00000268489	NM_006885.3	906	Cta/Gta																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348371	89348371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	617	634	3	ENST00000301030.4:c.4579G>A	p.Asp1527Asn	p.D1527N	ENST00000301030	NM_001256183.1	1527	Gat/Aat																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016580	12016580	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	218	350	0	ENST00000353533.5:c.716G>C	p.Arg239Thr	p.R239T	ENST00000353533	NM_003010.3	239	aGa/aCa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244746	41244746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	80	588	0	ENST00000357654.3:c.2802G>C	p.Gln934His	p.Q934H	ENST00000357654	NM_007294.3	934	caG/caC																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58725336	58725336	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	244	498	0	ENST00000305921.3:c.910C>T	p.Gln304Ter	p.Q304*	ENST00000305921	NM_003620.3	304	Cag/Tag																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732993	74732993	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	174	381	0	ENST00000359995.5:c.250G>T	p.Glu84Ter	p.E84*	ENST00000359995	NM_001195427.1	84	Gag/Tag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207606	2207606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	166	565	1	ENST00000398665.3:c.890C>T	p.Ser297Leu	p.S297L	ENST00000398665	NM_032482.2	297	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152004	11152004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	145	478	0	ENST00000344626.4:c.4192G>A	p.Glu1398Lys	p.E1398K	ENST00000344626	NM_003072.3	1398	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152030	11152030	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	165	517	0	ENST00000344626.4:c.4218G>C	p.Gln1406His	p.Q1406H	ENST00000344626	NM_003072.3	1406	caG/caC																																																																														
XPO1	7514	MSKCC	GRCh37	2	61753572	61753572	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	484	435	0	ENST00000401558.2:c.211C>T	p.Gln71Ter	p.Q71*	ENST00000401558	NM_003400.3	71	Cag/Tag																																																																														
IDH1	3417	MSKCC	GRCh37	2	209104608	209104609	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	122	448	1	ENST00000345146.2:c.969_970delinsAA	p.Glu324Lys	p.E324K	ENST00000345146	NM_005896.2	323	caGGag/caAAag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024332	31024332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	264	461	0	ENST00000375687.4:c.3817C>T	p.Arg1273Cys	p.R1273C	ENST00000375687	NM_015338.5	1273	Cgt/Tgt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164885	36164885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	156	595	0	ENST00000300305.3:c.990C>A	p.Phe330Leu	p.F330L	ENST00000300305		330	ttC/ttA																																																																														
EP300	2033	MSKCC	GRCh37	22	41560083	41560083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	118	405	0	ENST00000263253.7:c.3755G>C	p.Arg1252Thr	p.R1252T	ENST00000263253	NM_001429.3	1252	aGa/aCa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183655	10183655	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	161	650	0	ENST00000256474.2:c.124G>C	p.Glu42Gln	p.E42Q	ENST00000256474	NM_000551.3	42	Gag/Cag																																																																														
ATR	545	MSKCC	GRCh37	3	142185282	142185282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	270	446	0	ENST00000350721.4:c.6781C>A	p.Pro2261Thr	p.P2261T	ENST00000350721	NM_001184.3	2261	Cct/Act																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170016856	170016856	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	165	502	0	ENST00000295797.4:c.1661C>G	p.Ser554Cys	p.S554C	ENST00000295797	NM_002740.5	554	tCt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947127	178947127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	87	362	0	ENST00000263967.3:c.2563C>T	p.His855Tyr	p.H855Y	ENST00000263967	NM_006218.2	855	Cac/Tac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539822	187539822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	127	349	0	ENST00000441802.2:c.7918G>A	p.Glu2640Lys	p.E2640K	ENST00000441802	NM_005245.3	2640	Gaa/Aaa																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045858	26045858	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	291	312	0	ENST00000540144.1:c.220G>T	p.Glu74Ter	p.E74*	ENST00000540144	NM_003531.2	74	Gaa/Taa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94067976	94067976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	25	267	0	ENST00000369303.4:c.986C>T	p.Thr329Ile	p.T329I	ENST00000369303	NM_004440.3	329	aCa/aTa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419954	152419954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	67	450	0	ENST00000206249.3:c.1641C>A	p.His547Gln	p.H547Q	ENST00000206249	NM_000125.3	547	caC/caA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884514	151884514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	52	425	0	ENST00000262189.6:c.4841C>G	p.Ser1614Cys	p.S1614C	ENST00000262189	NM_170606.2	1614	tCt/tGt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370951	55370951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	356	649	0	ENST00000297316.4:c.253C>T	p.Arg85Trp	p.R85W	ENST00000297316	NM_022454.3	85	Cgg/Tgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69136801	69136801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	127	421	0	ENST00000288368.4:c.4715G>C	p.Arg1572Thr	p.R1572T	ENST00000288368	NM_024870.2	1572	aGa/aCa																																																																														
FANCC	2176	MSKCC	GRCh37	9	97873849	97873849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	152	687	0	ENST00000289081.3:c.1225G>C	p.Glu409Gln	p.E409Q	ENST00000289081	NM_000136.2	409	Gag/Cag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179180	123179180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	124	211	0	ENST00000218089.9:c.629C>T	p.Ser210Leu	p.S210L	ENST00000218089	NM_001042749.1	210	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	111	463	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	136	759	4	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918502	44918502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	28	145	0	ENST00000377967.4:c.985C>T	p.Gln329Ter	p.Q329*	ENST00000377967	NM_021140.2	329	Cag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	117	561	1	ENST00000267101.3:c.273G>A	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atA																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740727	58740727	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	75	526	0	ENST00000305921.3:c.1636delC	p.Leu546Ter	p.L546*	ENST00000305921	NM_003620.3	544	ggC/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	94	417	0	ENST00000263967.3:c.316G>T	p.Gly106Cys	p.G106C	ENST00000263967	NM_006218.2	106	Ggc/Tgc																																																																														
INSR	3643	MSKCC	GRCh37	19	7122904	7122904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	71	581	1	ENST00000302850.5:c.3355C>T	p.Arg1119Trp	p.R1119W	ENST00000302850	NM_000208.2	1119	Cgg/Tgg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777098	9777098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	152	667	0	ENST00000377346.4:c.862G>A	p.Glu288Lys	p.E288K	ENST00000377346	NM_005026.3	288	Gag/Aag																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112764462	112764462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	72	471	0	ENST00000369452.4:c.1071C>G	p.Ile357Met	p.I357M	ENST00000369452	NM_007373.3	357	atC/atG																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64135716	64135716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	60	546	0	ENST00000334205.4:c.1184G>A	p.Arg395Lys	p.R395K	ENST00000334205	NM_003942.2	395	aGg/aAg																																																																														
ATM	472	MSKCC	GRCh37	11	108123635	108123635	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	38	269	0	ENST00000278616.4:c.1894G>C	p.Glu632Gln	p.E632Q	ENST00000278616	NM_000051.3	632	Gaa/Caa																																																																														
POLE	5426	MSKCC	GRCh37	12	133238273	133238273	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	64	306	0	ENST00000320574.5:c.2707-3C>T		p.X903_splice	ENST00000320574	NM_006231.2	903																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549277	21549277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	73	677	0	ENST00000382592.4:c.2999C>T	p.Ser1000Leu	p.S1000L	ENST00000382592	NM_014572.2	1000	tCg/tTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950806	32950806	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	38	316	0	ENST00000380152.3:c.8633-1G>C		p.X2878_splice	ENST00000380152		2878																																																																															
TSC2	7249	MSKCC	GRCh37	16	2098753	2098753	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	105	452	0	ENST00000219476.3:c.137G>A	p.Arg46Lys	p.R46K	ENST00000219476	NM_000548.3	46	aGa/aAa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640873	3640873	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	58	635	0	ENST00000294008.3:c.2766G>C	p.Lys922Asn	p.K922N	ENST00000294008	NM_032444.2	922	aaG/aaC																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349032	11349033	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	53	479	0	ENST00000332029.2:c.303_304delinsAT	p.Phe101Leu	p.F101L	ENST00000332029	NM_003745.1	101	ttCCtg/ttATtg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16021315	16021315	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	48	233	0	ENST00000268712.3:c.1942del	p.Ala648GlnfsTer120	p.A648Qfs*120	ENST00000268712	NM_006311.3	648	Gca/ca																																																																														
NF1	4763	MSKCC	GRCh37	17	29550464	29550464	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	50	211	0	ENST00000358273.4:c.1724C>T	p.Ser575Leu	p.S575L	ENST00000358273	NM_001042492.2	575	tCa/tTa																																																																														
INSR	3643	MSKCC	GRCh37	19	7132319	7132319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	44	336	0	ENST00000302850.5:c.2692C>G	p.Leu898Val	p.L898V	ENST00000302850	NM_000208.2	898	Ctc/Gtc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138571	11138571	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	147	671	0	ENST00000344626.4:c.3327G>C	p.Met1109Ile	p.M1109I	ENST00000344626	NM_003072.3	1109	atG/atC																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289922	15289922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	153	664	0	ENST00000263388.2:c.3632C>T	p.Ser1211Leu	p.S1211L	ENST00000263388	NM_000435.2	1211	tCa/tTa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967070	18967070	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	50	651	0	ENST00000262803.5:c.1785C>G	p.Tyr595Ter	p.Y595*	ENST00000262803	NM_002911.3	595	taC/taG																																																																														
CIC	23152	MSKCC	GRCh37	19	42794572	42794572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	162	693	0	ENST00000575354.2:c.1652C>T	p.Ser551Leu	p.S551L	ENST00000575354	NM_015125.3	551	tCa/tTa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39744019	39744019	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	35	315	1	ENST00000361337.2:c.1647G>T	p.Lys549Asn	p.K549N	ENST00000361337	NM_003286.2	549	aaG/aaT																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417896	138417896	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	69	437	0	ENST00000289153.2:c.1623C>G	p.Ile541Met	p.I541M	ENST00000289153	NM_006219.2	541	atC/atG																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652126	36652136	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGAGGCCGG	GGCGAGGCCGG	-			P-0015966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	118	526	0	ENST00000244741.5:c.249_259del	p.Arg84Ter	p.R84*	ENST00000244741	NM_000389.4	83	cGGCGAGGCCGG/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	413	654	2	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41543904	41543904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	321	604	1	ENST00000263253.7:c.2195C>T	p.Pro732Leu	p.P732L	ENST00000263253	NM_001429.3	732	cCt/cTt																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72241861	72241861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	133	297	0	ENST00000357731.5:c.529C>A	p.Pro177Thr	p.P177T	ENST00000357731	NM_173808.2	177	Cca/Aca																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120471694	120471694	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	133	406	0	ENST00000256646.2:c.3797A>T	p.Asn1266Ile	p.N1266I	ENST00000256646	NM_024408.3	1266	aAc/aTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720663	89720663	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	147	220	0	ENST00000371953.3:c.814delC	p.His272ThrfsTer4	p.H272Tfs*4	ENST00000371953	NM_000314.4	272	Cac/ac																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94201062	94201062	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	39	268	0	ENST00000323929.3:c.1018-3G>C		p.X340_splice	ENST00000323929	NM_005591.3	340																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443821	49443821	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	95	621	0	ENST00000301067.7:c.3550G>T	p.Glu1184Ter	p.E1184*	ENST00000301067	NM_003482.3	1184	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918784	32918784	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	134	415	0	ENST00000380152.3:c.6931C>G	p.Pro2311Ala	p.P2311A	ENST00000380152		2311	Cca/Gca																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777863	3777863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	494	819	0	ENST00000262367.5:c.7185A>G	p.Ile2395Met	p.I2395M	ENST00000262367	NM_004380.2	2395	atA/atG																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778671	3778671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	141	510	0	ENST00000262367.5:c.6377G>A	p.Gly2126Asp	p.G2126D	ENST00000262367	NM_004380.2	2126	gGc/gAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3801796	3801796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	300	483	0	ENST00000262367.5:c.3710G>A	p.Cys1237Tyr	p.C1237Y	ENST00000262367	NM_004380.2	1237	tGt/tAt																																																																														
CALR	811	MSKCC	GRCh37	19	13051704	13051704	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	241	392	0	ENST00000316448.5:c.960+3G>A		p.X320_splice	ENST00000316448	NM_004343.3	320																																																																															
REL	5966	MSKCC	GRCh37	2	61145544	61145544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	34	352	0	ENST00000295025.8:c.656G>A	p.Arg219His	p.R219H	ENST00000295025	NM_002908.2	219	cGt/cAt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99136407	99136407	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	72	126	0	ENST00000074304.5:c.-103-2A>T		p.X35_splice	ENST00000074304	NM_001134224.1	35																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872474	136872474	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	130	193	0	ENST00000241393.3:c.1024A>T	p.Thr342Ser	p.T342S	ENST00000241393	NM_003467.2	342	Act/Tct																																																																														
AURKA	6790	MSKCC	GRCh37	20	54948528	54948528	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	169	471	0	ENST00000312783.6:c.790C>G	p.Leu264Val	p.L264V	ENST00000312783	NM_198436.1	264	Ctt/Gtt																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319369	62319369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	226	681	0	ENST00000508582.2:c.1633G>A	p.Asp545Asn	p.D545N	ENST00000508582		545	Gat/Aat																																																																														
EP300	2033	MSKCC	GRCh37	22	41556729	41556729	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	187	355	0	ENST00000263253.7:c.3671+3A>T		p.X1224_splice	ENST00000263253	NM_001429.3	1224																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52597510	52597510	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	190	297	0	ENST00000394830.3:c.3801-1G>A		p.X1267_splice	ENST00000394830	NM_018313.4	1267																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134825421	134825421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	187	506	0	ENST00000398015.3:c.937G>T	p.Asp313Tyr	p.D313Y	ENST00000398015	NM_004441.4	313	Gac/Tac																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430401	181430401	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	282	677	0	ENST00000325404.1:c.253A>G	p.Thr85Ala	p.T85A	ENST00000325404	NM_003106.3	85	Acg/Gcg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139821	55139821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	238	412	0	ENST00000257290.5:c.1482G>T	p.Glu494Asp	p.E494D	ENST00000257290	NM_006206.4	494	gaG/gaT																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873615	35873615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	318	283	0	ENST00000303115.3:c.571C>A	p.Leu191Met	p.L191M	ENST00000303115	NM_002185.3	191	Ctg/Atg																																																																														
IRF4	3662	MSKCC	GRCh37	6	393345	393345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	227	396	1	ENST00000380956.4:c.193G>A	p.Glu65Lys	p.E65K	ENST00000380956	NM_001195286.1	65	Gag/Aag																																																																														
PARK2	5071	MSKCC	GRCh37	6	162206801	162206801	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	277	435	0	ENST00000366898.1:c.871+3A>T		p.X291_splice	ENST00000366898	NM_004562.2	291																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8339019	8339019	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	98	381	1	ENST00000356435.5:c.5282A>T	p.Glu1761Val	p.E1761V	ENST00000356435		1761	gAa/gTa																																																																														
TEK	7010	MSKCC	GRCh37	9	27213569	27213569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	296	498	0	ENST00000380036.4:c.2965C>G	p.Gln989Glu	p.Q989E	ENST00000380036	NM_000459.3	989	Caa/Gaa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399932	139399932	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	414	713	0	ENST00000277541.6:c.4416C>G	p.Cys1472Trp	p.C1472W	ENST00000277541	NM_017617.3	1472	tgC/tgG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	43	476	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	97	563	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	108	444	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	108	444	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205070	128205070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	55	647	0	ENST00000341105.2:c.371C>T	p.Thr124Met	p.T124M	ENST00000341105	NM_032638.4	124	aCg/aTg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131498	202131498	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	45	403	0	ENST00000358485.4:c.466C>G	p.Gln156Glu	p.Q156E	ENST00000358485	NM_001080125.1	156	Caa/Gaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41545855	41545855	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	67	890	0	ENST00000263253.7:c.2470C>T	p.Gln824Ter	p.Q824*	ENST00000263253	NM_001429.3	824	Caa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	108	444	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84391389	84391389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	69	584	0	ENST00000321945.7:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000321945	NM_139076.2	148	cGa/cAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41556727	41556727	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	28	327	0	ENST00000263253.7:c.3671+1G>A		p.X1224_splice	ENST00000263253	NM_001429.3	1224																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120512171	120512172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	44	358	0	ENST00000256646.2:c.1070dup	p.Ala358GlyfsTer20	p.A358Gfs*20	ENST00000256646	NM_024408.3	357	gtg/gtTg																																																																														
RET	5979	MSKCC	GRCh37	10	43615038	43615038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	37	573	2	ENST00000355710.3:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000355710	NM_020975.4	818	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	42058783	42058783	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	14	228	0	ENST00000219905.7:c.8503C>G	p.Gln2835Glu	p.Q2835E	ENST00000219905	NM_001164273.1	2835	Caa/Gaa																																																																														
BLM	641	MSKCC	GRCh37	15	91303846	91303846	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	24	262	0	ENST00000355112.3:c.1243G>C	p.Asp415His	p.D415H	ENST00000355112	NM_000057.2	415	Gat/Cat																																																																														
BLM	641	MSKCC	GRCh37	15	91304278	91304278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	37	386	0	ENST00000355112.3:c.1675G>A	p.Asp559Asn	p.D559N	ENST00000355112	NM_000057.2	559	Gat/Aat																																																																														
SLX4	84464	MSKCC	GRCh37	16	3651097	3651097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	49	748	0	ENST00000294008.3:c.1046G>C	p.Arg349Thr	p.R349T	ENST00000294008	NM_032444.2	349	aGa/aCa																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66518894	66518894	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	21	284	0	ENST00000358598.2:c.178-3C>T		p.X60_splice	ENST00000358598	NM_212471.2	60																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11098450	11098450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	47	444	0	ENST00000344626.4:c.968C>T	p.Ser323Leu	p.S323L	ENST00000344626	NM_003072.3	323	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11172481	11172481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	85	643	2	ENST00000344626.4:c.4933G>A	p.Glu1645Lys	p.E1645K	ENST00000344626	NM_003072.3	1645	Gaa/Aaa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213005	39213005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	64	730	1	ENST00000402219.2:c.3962G>A	p.Arg1321Lys	p.R1321K	ENST00000402219	NM_005633.3	1321	aGa/aAa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017186	31017186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	48	422	0	ENST00000375687.4:c.517G>T	p.Val173Phe	p.V173F	ENST00000375687	NM_015338.5	173	Gtc/Ttc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048626	180048626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	40	561	0	ENST00000261937.6:c.1936G>C	p.Glu646Gln	p.E646Q	ENST00000261937	NM_182925.4	646	Gag/Cag																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324156	31324156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	37	449	0	ENST00000412585.2:c.407G>A	p.Gly136Glu	p.G136E	ENST00000412585	NM_005514.6	136	gGg/gAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963907	2963907	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	50	617	0	ENST00000396946.4:c.1900G>T	p.Glu634Ter	p.E634*	ENST00000396946	NM_032415.4	634	Gag/Tag																																																																														
MET	4233	MSKCC	GRCh37	7	116436122	116436122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	54	418	0	ENST00000397752.3:c.4117G>T	p.Asp1373Tyr	p.D1373Y	ENST00000397752	NM_000245.2	1373	Gat/Tat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845538	151845538	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	41	638	0	ENST00000262189.6:c.13474C>T	p.Gln4492Ter	p.Q4492*	ENST00000262189	NM_170606.2	4492	Caa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152009018	152009018	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	30	305	0	ENST00000262189.6:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000262189	NM_170606.2	202	Cag/Tag																																																																														
NBN	4683	MSKCC	GRCh37	8	90960111	90960111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	23	209	0	ENST00000265433.3:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000265433	NM_002485.4	619	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	126	545	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	98	680	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361249	66361249	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	38	394	0	ENST00000273854.3:c.923G>T	p.Gly308Val	p.G308V	ENST00000273854	NM_004439.5	308	gGg/gTg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88659854	88659854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	137	405	0	ENST00000372037.3:c.501G>A	p.Met167Ile	p.M167I	ENST00000372037	NM_004329.2	167	atG/atA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438067	49438067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	101	705	1	ENST00000301067.7:c.5104C>T	p.Arg1702Ter	p.R1702*	ENST00000301067	NM_003482.3	1702	Cga/Tga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966270	25966270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	39	598	0	ENST00000435504.4:c.2936C>T	p.Thr979Met	p.T979M	ENST00000435504		979	aCg/aTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248358	212248358	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	19	294	1	ENST00000342788.4:c.3909C>A	p.His1303Gln	p.H1303Q	ENST00000342788	NM_005235.2	1303	caC/caA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286767	212286767	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	136	612	0	ENST00000342788.4:c.2929A>G	p.Met977Val	p.M977V	ENST00000342788	NM_005235.2	977	Atg/Gtg																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186505638	186505649	+	inframe_deletion	In_Frame_Del	DEL	ATCTACCTACCA	ATCTACCTACCA	-			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	77	432	0	ENST00000323963.5:c.1049_1060del	p.Leu350_Asn353del	p.L350_N353del	ENST00000323963		349	gATCTACCTACCAat/gat																																																																														
TET2	54790	MSKCC	GRCh37	4	106156642	106156642	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	62	562	0	ENST00000380013.4:c.1543A>G	p.Asn515Asp	p.N515D	ENST00000380013	NM_001127208.2	515	Aac/Gac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554872	187554872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	48	493	0	ENST00000441802.2:c.4289A>G	p.Glu1430Gly	p.E1430G	ENST00000441802	NM_005245.3	1430	gAg/gGg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180040017	180040017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	169	906	2	ENST00000261937.6:c.3425C>A	p.Pro1142His	p.P1142H	ENST00000261937	NM_182925.4	1142	cCc/cAc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982022	93982022	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	97	371	0	ENST00000369303.4:c.1443C>G	p.Tyr481Ter	p.Y481*	ENST00000369303	NM_004440.3	481	taC/taG																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068033	94068033	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	127	513	0	ENST00000369303.4:c.929G>C	p.Cys310Ser	p.C310S	ENST00000369303	NM_004440.3	310	tGt/tCt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674206	117674206	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	213	765	0	ENST00000368508.3:c.4268C>G	p.Ala1423Gly	p.A1423G	ENST00000368508	NM_002944.2	1423	gCc/gGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	272	460	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	272	460	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	272	460	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
BCOR	54880	MSKCC	GRCh37	X	39922118	39922118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	113	885	0	ENST00000378444.4:c.4054G>T	p.Asp1352Tyr	p.D1352Y	ENST00000378444	NM_001123385.1	1352	Gac/Tac																																																																														
ATRX	546	MSKCC	GRCh37	X	76813032	76813032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	96	719	0	ENST00000373344.5:c.6589C>G	p.Arg2197Gly	p.R2197G	ENST00000373344	NM_000489.3	2197	Cgt/Ggt																																																																														
ATRX	546	MSKCC	GRCh37	X	76888770	76888770	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	92	673	0	ENST00000373344.5:c.5059A>T	p.Arg1687Ter	p.R1687*	ENST00000373344	NM_000489.3	1687	Aga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76939306	76939306	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	92	672	0	ENST00000373344.5:c.1442A>T	p.Glu481Val	p.E481V	ENST00000373344	NM_000489.3	481	gAg/gTg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073899	8073899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	110	359	0	ENST00000377482.5:c.760G>T	p.Ala254Ser	p.A254S	ENST00000377482	NM_018948.3	254	Gct/Tct																																																																														
MTOR	2475	MSKCC	GRCh37	1	11189004	11189004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	148	437	0	ENST00000361445.4:c.5719C>A	p.Leu1907Ile	p.L1907I	ENST00000361445	NM_004958.3	1907	Ctc/Atc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272449	11272449	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	188	492	0	ENST00000361445.4:c.3481C>T	p.Arg1161Ter	p.R1161*	ENST00000361445	NM_004958.3	1161	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11293466	11293466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	145	546	1	ENST00000361445.4:c.2410G>A	p.Glu804Lys	p.E804K	ENST00000361445	NM_004958.3	804	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242643	16242643	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	154	536	0	ENST00000375759.3:c.1264T>G	p.Phe422Val	p.F422V	ENST00000375759	NM_015001.2	422	Ttt/Gtt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257551	16257551	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	146	421	0	ENST00000375759.3:c.4816G>T	p.Glu1606Ter	p.E1606*	ENST00000375759	NM_015001.2	1606	Gag/Tag																																																																														
SDHB	6390	MSKCC	GRCh37	1	17354250	17354250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	85	363	0	ENST00000375499.3:c.534G>T	p.Glu178Asp	p.E178D	ENST00000375499	NM_003000.2	178	gaG/gaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099430	27099430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	148	566	1	ENST00000324856.7:c.3667C>T	p.Arg1223Cys	p.R1223C	ENST00000324856	NM_006015.4	1223	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	327	517	1	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
STK40	83931	MSKCC	GRCh37	1	36807474	36807474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	187	573	0	ENST00000373129.3:c.1190G>T	p.Ser397Ile	p.S397I	ENST00000373129	NM_032017.1	397	aGc/aTc																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39322565	39322565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	147	532	0	ENST00000373001.3:c.427G>T	p.Val143Phe	p.V143F	ENST00000373001	NM_022157.3	143	Gtc/Ttc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40367484	40367484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	35	47	0	ENST00000397332.2:c.77G>A	p.Ser26Asn	p.S26N	ENST00000397332	NM_001033082.2	26	aGc/aAc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46531777	46531777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	102	412	0	ENST00000262741.5:c.570G>T	p.Glu190Asp	p.E190D	ENST00000262741	NM_003629.3	190	gaG/gaT																																																																														
JAK1	3716	MSKCC	GRCh37	1	65303660	65303660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	180	568	0	ENST00000342505.4:c.3095A>C	p.Lys1032Thr	p.K1032T	ENST00000342505	NM_002227.2	1032	aAg/aCg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65304240	65304240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	119	417	0	ENST00000342505.4:c.2875C>A	p.Leu959Met	p.L959M	ENST00000342505	NM_002227.2	959	Ctg/Atg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65311309	65311309	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	113	400	0	ENST00000342505.4:c.2002G>T	p.Glu668Ter	p.E668*	ENST00000342505	NM_002227.2	668	Gag/Tag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65352023	65352023	+	splice_region_variant,5_prime_UTR_variant	Splice_Region	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	51	209	0	ENST00000342505.4:c.-76G>A		p.X26_splice	ENST00000342505	NM_002227.2	26																																																																															
NEGR1	257194	MSKCC	GRCh37	1	72058499	72058499	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	118	394	3	ENST00000357731.5:c.940+1G>A		p.X314_splice	ENST00000357731	NM_173808.2	314																																																																															
FUBP1	8880	MSKCC	GRCh37	1	78429757	78429757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	59	285	0	ENST00000370768.2:c.1031G>A	p.Arg344Gln	p.R344Q	ENST00000370768	NM_003902.3	344	cGa/cAa																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736573	85736573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	70	206	0	ENST00000370580.1:c.74G>A	p.Arg25His	p.R25H	ENST00000370580	NM_003921.4	25	cGt/cAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256514	115256514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	36	561	1	ENST00000369535.4:c.197C>T	p.Ala66Val	p.A66V	ENST00000369535	NM_002524.4	66	gCc/gTc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115263192	115263192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	172	528	0	ENST00000438362.2:c.2158C>T	p.Arg720Cys	p.R720C	ENST00000438362	NM_001242891.1	720	Cgc/Tgc																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699453	117699453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	34	459	0	ENST00000369458.3:c.188A>G	p.Lys63Arg	p.K63R	ENST00000369458	NM_024626.3	63	aAa/aGa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466499	120466499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	138	620	0	ENST00000256646.2:c.4620G>T	p.Glu1540Asp	p.E1540D	ENST00000256646	NM_024408.3	1540	gaG/gaT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120508112	120508112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	126	398	2	ENST00000256646.2:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000256646	NM_024408.3	549	Gat/Aat																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874539	155874539	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	219	680	0	ENST00000368323.3:c.220T>A	p.Leu74Met	p.L74M	ENST00000368323	NM_006912.5	74	Ttg/Atg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156848943	156848943	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	171	615	0	ENST00000524377.1:c.1835C>G	p.Ala612Gly	p.A612G	ENST00000524377	NM_002529.3	612	gCt/gGt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724610	162724610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	163	465	0	ENST00000367921.3:c.382C>T	p.Arg128Cys	p.R128C	ENST00000367921	NM_006182.2	128	Cgc/Tgc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745503	162745503	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	113	485	0	ENST00000367921.3:c.1918C>A	p.Leu640Ile	p.L640I	ENST00000367921	NM_006182.2	640	Cta/Ata																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176175723	176175723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	290	876	0	ENST00000367669.3:c.392G>T	p.Ser131Ile	p.S131I	ENST00000367669	NM_022457.5	131	aGc/aTc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193181526	193181526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	110	465	0	ENST00000367435.3:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000367435	NM_024529.4	358	cGa/cAa																																																																														
FH	2271	MSKCC	GRCh37	1	241661231	241661231	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	153	580	0	ENST00000366560.3:c.1430A>C	p.Lys477Thr	p.K477T	ENST00000366560	NM_000143.3	477	aAa/aCa																																																																														
FH	2271	MSKCC	GRCh37	1	241680541	241680541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	132	492	0	ENST00000366560.3:c.208G>A	p.Ala70Thr	p.A70T	ENST00000366560	NM_000143.3	70	Gcc/Acc																																																																														
FH	2271	MSKCC	GRCh37	1	241680598	241680598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	118	373	0	ENST00000366560.3:c.151C>T	p.Arg51Trp	p.R51W	ENST00000366560	NM_000143.3	51	Cgg/Tgg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246518379	246518379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	133	357	0	ENST00000388985.4:c.182G>A	p.Arg61Gln	p.R61Q	ENST00000388985		61	cGa/cAa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100283	8100283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	141	538	1	ENST00000346208.3:c.257G>A	p.Arg86His	p.R86H	ENST00000346208		86	cGc/cAc																																																																														
RET	5979	MSKCC	GRCh37	10	43596057	43596057	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142641173		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	40	651	0	ENST00000355710.3:c.224C>T	p.Thr75Met	p.T75M	ENST00000355710	NM_020975.4	75	aCg/aTg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63829541	63829541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	121	376	0	ENST00000279873.7:c.1184G>A	p.Arg395His	p.R395H	ENST00000279873	NM_032199.2	395	cGc/cAc																																																																														
TET1	80312	MSKCC	GRCh37	10	70404865	70404865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	95	467	0	ENST00000373644.4:c.2379C>A	p.Phe793Leu	p.F793L	ENST00000373644	NM_030625.2	793	ttC/ttA																																																																														
TET1	80312	MSKCC	GRCh37	10	70432730	70432730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	36	544	0	ENST00000373644.4:c.4752C>A	p.Tyr1584Ter	p.Y1584*	ENST00000373644	NM_030625.2	1584	taC/taA																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681437	88681437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35619497		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	197	628	0	ENST00000372037.3:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000372037	NM_004329.2	443	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	145	514	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692920	89692920	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	128	557	0	ENST00000371953.3:c.404T>G	p.Ile135Arg	p.I135R	ENST00000371953	NM_000314.4	135	aTa/aGa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710629	114710629	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	174	542	0	ENST00000543371.1:c.114G>T	p.Glu38Asp	p.E38D	ENST00000543371	NM_001198531.1	38	gaG/gaT																																																																														
LMO1	4004	MSKCC	GRCh37	11	8246189	8246189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	156	522	1	ENST00000335790.3:c.445G>T	p.Gly149Cys	p.G149C	ENST00000335790	NM_002315.2	149	Ggc/Tgc																																																																														
WT1	7490	MSKCC	GRCh37	11	32456866	32456866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	120	525	0	ENST00000332351.3:c.26T>C	p.Val9Ala	p.V9A	ENST00000332351	NM_024426.4	9	gTc/gCc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67197051	67197051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	131	470	0	ENST00000312629.5:c.294G>A	p.Met98Ile	p.M98I	ENST00000312629	NM_003952.2	98	atG/atA																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202604	67202604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	187	537	0	ENST00000312629.5:c.1413G>T	p.Lys471Asn	p.K471N	ENST00000312629	NM_003952.2	471	aaG/aaT																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94170395	94170395	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	77	277	0	ENST00000323929.3:c.1874A>C	p.Lys625Thr	p.K625T	ENST00000323929	NM_005591.3	625	aAa/aCa																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	101	455	2	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
YAP1	10413	MSKCC	GRCh37	11	102080254	102080254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193100333		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	145	445	0	ENST00000282441.5:c.991C>T	p.Arg331Trp	p.R331W	ENST00000282441	NM_001130145.2	331	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108114842	108114842	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145355104		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	92	412	0	ENST00000278616.4:c.659C>T	p.Ala220Val	p.A220V	ENST00000278616	NM_000051.3	220	gCg/gTg																																																																														
ATM	472	MSKCC	GRCh37	11	108159816	108159816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	29	124	0	ENST00000278616.4:c.4222C>A	p.Leu1408Ile	p.L1408I	ENST00000278616	NM_000051.3	1408	Ctt/Att																																																																														
ATM	472	MSKCC	GRCh37	11	108190753	108190753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	104	496	0	ENST00000278616.4:c.6420C>A	p.Phe2140Leu	p.F2140L	ENST00000278616	NM_000051.3	2140	ttC/ttA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342507	118342507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	87	252	0	ENST00000534358.1:c.633G>T	p.Lys211Asn	p.K211N	ENST00000534358	NM_005933.3	211	aaG/aaT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342641	118342641	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	93	335	0	ENST00000534358.1:c.767T>G	p.Ile256Ser	p.I256S	ENST00000534358	NM_005933.3	256	aTt/aGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343093	118343093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	109	344	1	ENST00000534358.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000534358	NM_005933.3	407	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343805	118343805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	144	481	3	ENST00000534358.1:c.1931G>A	p.Arg644His	p.R644H	ENST00000534358	NM_005933.3	644	cGc/cAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343933	118343933	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	94	338	0	ENST00000534358.1:c.2059A>T	p.Arg687Trp	p.R687W	ENST00000534358	NM_005933.3	687	Agg/Tgg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118347602	118347602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	154	537	1	ENST00000534358.1:c.3239G>A	p.Gly1080Asp	p.G1080D	ENST00000534358	NM_005933.3	1080	gGc/gAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372512	118372512	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	176	631	2	ENST00000534358.1:c.6445C>T	p.Arg2149Ter	p.R2149*	ENST00000534358	NM_005933.3	2149	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377160	118377160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	131	425	0	ENST00000534358.1:c.10553C>A	p.Ser3518Tyr	p.S3518Y	ENST00000534358	NM_005933.3	3518	tCt/tAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118380810	118380810	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	83	331	0	ENST00000534358.1:c.11048A>C	p.Gln3683Pro	p.Q3683P	ENST00000534358	NM_005933.3	3683	cAg/cCg																																																																														
CBL	867	MSKCC	GRCh37	11	119144724	119144724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	85	321	1	ENST00000264033.4:c.737G>A	p.Arg246Gln	p.R246Q	ENST00000264033	NM_005188.3	246	cGa/cAa																																																																														
CBL	867	MSKCC	GRCh37	11	119170354	119170354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	114	351	0	ENST00000264033.4:c.2584G>A	p.Glu862Lys	p.E862K	ENST00000264033	NM_005188.3	862	Gag/Aag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402275	402275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	179	630	1	ENST00000399788.2:c.4516C>T	p.Arg1506Trp	p.R1506W	ENST00000399788	NM_001042603.1	1506	Cgg/Tgg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	406212	406212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	80	343	0	ENST00000399788.2:c.4229C>A	p.Ser1410Tyr	p.S1410Y	ENST00000399788	NM_001042603.1	1410	tCt/tAt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	418983	418983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	166	740	1	ENST00000399788.2:c.3364G>T	p.Asp1122Tyr	p.D1122Y	ENST00000399788	NM_001042603.1	1122	Gat/Tat																																																																														
KDM5A	5927	MSKCC	GRCh37	12	464374	464374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	150	538	1	ENST00000399788.2:c.820G>A	p.Ala274Thr	p.A274T	ENST00000399788	NM_001042603.1	274	Gca/Aca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18466940	18466940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	156	526	0	ENST00000266497.5:c.1079C>A	p.Ser360Tyr	p.S360Y	ENST00000266497		360	tCt/tAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793366	18793366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	73	355	0	ENST00000266497.5:c.4063C>A	p.Leu1355Ile	p.L1355I	ENST00000266497		1355	Ctc/Atc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21630748	21630748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	92	372	0	ENST00000421138.2:c.856C>A	p.Leu286Ile	p.L286I	ENST00000421138		286	Cta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427369	49427369	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	189	600	1	ENST00000301067.7:c.11119C>T	p.Arg3707Ter	p.R3707*	ENST00000301067	NM_003482.3	3707	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435243	49435243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	183	685	2	ENST00000301067.7:c.6310C>A	p.Leu2104Ile	p.L2104I	ENST00000301067	NM_003482.3	2104	Ctc/Atc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480629	50480629	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	143	427	0	ENST00000394963.4:c.499G>T	p.Asp167Tyr	p.D167Y	ENST00000394963	NM_003076.4	167	Gat/Tat																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	234	627	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58143065	58143065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	212	639	0	ENST00000257904.6:c.719G>A	p.Arg240Gln	p.R240Q	ENST00000257904	NM_000075.3	240	cGa/cAa																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869539	102869539	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	202	502	0	ENST00000307046.8:c.102C>A	p.Tyr34Ter	p.Y34*	ENST00000307046	NM_001111285.1	34	taC/taA																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112891035	112891035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	90	323	0	ENST00000351677.2:c.369G>T	p.Glu123Asp	p.E123D	ENST00000351677	NM_002834.3	123	gaG/gaT																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120640	115120640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	225	789	0	ENST00000257566.3:c.366G>T	p.Glu122Asp	p.E122D	ENST00000257566	NM_016569.3	122	gaG/gaT																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120675	115120675	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	59	750	1	ENST00000257566.3:c.331G>T	p.Glu111Ter	p.E111*	ENST00000257566	NM_016569.3	111	Gaa/Taa																																																																														
SETD8	387893	MSKCC	GRCh37	12	123879656	123879656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	100	286	0	ENST00000330479.4:c.352G>T	p.Asp118Tyr	p.D118Y	ENST00000330479	NM_020382.3	118	Gac/Tac																																																																														
POLE	5426	MSKCC	GRCh37	12	133249847	133249847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	145	475	0	ENST00000320574.5:c.1376C>A	p.Ser459Tyr	p.S459Y	ENST00000320574	NM_006231.2	459	tCt/tAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133257255	133257255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	151	497	1	ENST00000320574.5:c.223G>T	p.Asp75Tyr	p.D75Y	ENST00000320574	NM_006231.2	75	Gat/Tat																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563383	21563383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	275	814	2	ENST00000382592.4:c.536C>T	p.Ser179Leu	p.S179L	ENST00000382592	NM_014572.2	179	tCg/tTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622526	28622526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	102	424	0	ENST00000241453.7:c.1091A>G	p.Tyr364Cys	p.Y364C	ENST00000241453	NM_004119.2	364	tAt/tGt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623571	28623571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	152	404	0	ENST00000241453.7:c.986C>T	p.Thr329Ile	p.T329I	ENST00000241453	NM_004119.2	329	aCt/aTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636086	28636086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	133	539	1	ENST00000241453.7:c.286G>A	p.Asp96Asn	p.D96N	ENST00000241453	NM_004119.2	96	Gac/Aac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32899248	32899248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	95	368	0	ENST00000380152.3:c.352C>T	p.Arg118Cys	p.R118C	ENST00000380152		118	Cgc/Tgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32903598	32903598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	100	392	0	ENST00000380152.3:c.650C>T	p.Ser217Phe	p.S217F	ENST00000380152		217	tCt/tTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906750	32906750	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	154	627	1	ENST00000380152.3:c.1135G>T	p.Gly379Ter	p.G379*	ENST00000380152		379	Gga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907384	32907384	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	96	392	0	ENST00000380152.3:c.1769T>G	p.Phe590Cys	p.F590C	ENST00000380152		590	tTt/tGt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911909	32911909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	125	539	0	ENST00000380152.3:c.3417G>T	p.Lys1139Asn	p.K1139N	ENST00000380152		1139	aaG/aaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912750	32912753	+	missense_variant	Missense_Mutation	ONP	GATT	GATT	TATG			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	83	334	0	ENST00000380152.3:c.4258_4261delinsTATG	p.Asp1420_Phe1421delinsTyrVal	p.D1420_F1421delinsYV	ENST00000380152		1420	GATTtt/TATGtt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918761	32918761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	79	310	0	ENST00000380152.3:c.6908C>T	p.Ser2303Phe	p.S2303F	ENST00000380152		2303	tCc/tTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32920979	32920979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	109	436	1	ENST00000380152.3:c.6953G>A	p.Arg2318Gln	p.R2318Q	ENST00000380152		2318	cGa/cAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972900	32972900	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	70	303	0	ENST00000380152.3:c.10250A>G	p.Tyr3417Cys	p.Y3417C	ENST00000380152		3417	tAt/tGt																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133773	41133773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	85	346	0	ENST00000379561.5:c.1855C>T	p.Arg619Trp	p.R619W	ENST00000379561	NM_002015.3	619	Cgg/Tgg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133851	41133851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	79	286	0	ENST00000379561.5:c.1777C>A	p.Leu593Ile	p.L593I	ENST00000379561	NM_002015.3	593	Ctc/Atc																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281497	49281497	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201906229		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	133	574	0	ENST00000282018.3:c.544G>A	p.Gly182Ser	p.G182S	ENST00000282018	NM_020377.2	182	Ggc/Agc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336276	73336276	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	44	183	0	ENST00000377767.4:c.2128-1G>T		p.X710_splice	ENST00000377767	NM_014953.3	710																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504542	103504542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	101	313	0	ENST00000355739.4:c.163C>A	p.Leu55Ile	p.L55I	ENST00000355739	NM_000123.3	55	Ctt/Att																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514775	103514775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	124	416	0	ENST00000355739.4:c.1276G>A	p.Glu426Lys	p.E426K	ENST00000355739	NM_000123.3	426	Gag/Aag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103525652	103525652	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	122	417	0	ENST00000355739.4:c.2923G>T	p.Glu975Ter	p.E975*	ENST00000355739	NM_000123.3	975	Gaa/Taa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609390	81609390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	155	420	0	ENST00000298171.2:c.988C>A	p.Leu330Met	p.L330M	ENST00000298171	NM_000369.2	330	Ctg/Atg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562618	95562618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	133	356	1	ENST00000343455.3:c.4639G>A	p.Asp1547Asn	p.D1547N	ENST00000343455	NM_177438.2	1547	Gac/Aac																																																																														
DICER1	23405	MSKCC	GRCh37	14	95563044	95563044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	64	217	0	ENST00000343455.3:c.4213G>T	p.Asp1405Tyr	p.D1405Y	ENST00000343455	NM_177438.2	1405	Gac/Tac																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643599	38643599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	161	490	0	ENST00000299084.4:c.1069G>T	p.Asp357Tyr	p.D357Y	ENST00000299084	NM_152594.2	357	Gac/Tac																																																																														
RAD51	5888	MSKCC	GRCh37	15	40998435	40998435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	173	671	4	ENST00000267868.3:c.286C>T	p.Arg96Trp	p.R96W	ENST00000267868	NM_002875.4	96	Cgg/Tgg																																																																														
MGA	23269	MSKCC	GRCh37	15	41988654	41988654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	103	383	0	ENST00000219905.7:c.1446G>T	p.Lys482Asn	p.K482N	ENST00000219905	NM_001164273.1	482	aaG/aaT																																																																														
MGA	23269	MSKCC	GRCh37	15	42050032	42050032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	83	325	0	ENST00000219905.7:c.7186C>T	p.Arg2396Ter	p.R2396*	ENST00000219905	NM_001164273.1	2396	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42053997	42053997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	99	487	0	ENST00000219905.7:c.7459C>A	p.Leu2487Ile	p.L2487I	ENST00000219905	NM_001164273.1	2487	Ctc/Atc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701231	43701231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	230	622	0	ENST00000382044.4:c.5464C>A	p.Leu1822Met	p.L1822M	ENST00000382044	NM_001141980.1	1822	Ctg/Atg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724594	43724594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	253	766	0	ENST00000382044.4:c.3473G>A	p.Gly1158Glu	p.G1158E	ENST00000382044	NM_001141980.1	1158	gGa/gAa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66777506	66777506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	29	530	2	ENST00000307102.5:c.872G>T	p.Arg291Met	p.R291M	ENST00000307102	NM_002755.3	291	aGg/aTg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477106	67477106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	170	552	2	ENST00000327367.4:c.913G>A	p.Ala305Thr	p.A305T	ENST00000327367	NM_005902.3	305	Gca/Aca																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680783	88680783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	201	562	0	ENST00000360948.2:c.474G>T	p.Glu158Asp	p.E158D	ENST00000360948	NM_001012338.2	158	gaG/gaT																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631934	90631934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	29	650	1	ENST00000330062.3:c.419G>T	p.Arg140Leu	p.R140L	ENST00000330062	NM_002168.2	140	cGg/cTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99486166	99486166	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	131	392	0	ENST00000268035.6:c.3472C>T	p.Arg1158Ter	p.R1158*	ENST00000268035	NM_000875.3	1158	Cga/Tga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2104303	2104303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	149	421	0	ENST00000219476.3:c.343C>T	p.Arg115Cys	p.R115C	ENST00000219476	NM_000548.3	115	Cgt/Tgt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2122887	2122887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	223	621	0	ENST00000219476.3:c.2258C>T	p.Ala753Val	p.A753V	ENST00000219476	NM_000548.3	753	gCc/gTc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225841	2225841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	156	587	1	ENST00000326181.6:c.1633G>A	p.Asp545Asn	p.D545N	ENST00000326181	NM_032271.2	545	Gac/Aac																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639116	3639116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112694849		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	222	654	0	ENST00000294008.3:c.4523C>T	p.Ser1508Leu	p.S1508L	ENST00000294008	NM_032444.2	1508	tCg/tTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641146	3641146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	348	893	2	ENST00000294008.3:c.2493G>T	p.Glu831Asp	p.E831D	ENST00000294008	NM_032444.2	831	gaG/gaT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858688	9858688	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	121	384	0	ENST00000330684.3:c.2713T>A	p.Ser905Thr	p.S905T	ENST00000330684	NM_001134407.1	905	Tcc/Acc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984919	9984919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	177	607	0	ENST00000330684.3:c.1046C>T	p.Ser349Phe	p.S349F	ENST00000330684	NM_001134407.1	349	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274136	10274136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	149	500	1	ENST00000330684.3:c.133G>T	p.Asp45Tyr	p.D45Y	ENST00000330684	NM_001134407.1	45	Gac/Tac																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349128	11349128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	129	347	0	ENST00000332029.2:c.208G>A	p.Ala70Thr	p.A70T	ENST00000332029	NM_003745.1	70	Gcc/Acc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029225	14029225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	105	311	1	ENST00000311895.7:c.1436C>A	p.Ser479Tyr	p.S479Y	ENST00000311895	NM_005236.2	479	tCt/tAt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041557	14041557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	151	424	1	ENST00000311895.7:c.2104C>T	p.Arg702Trp	p.R702W	ENST00000311895	NM_005236.2	702	Cgg/Tgg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23637624	23637624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	260	661	0	ENST00000261584.4:c.2681T>C	p.Val894Ala	p.V894A	ENST00000261584	NM_024675.3	894	gTa/gCa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646338	23646338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	166	576	0	ENST00000261584.4:c.1529G>T	p.Arg510Ile	p.R510I	ENST00000261584	NM_024675.3	510	aGa/aTa																																																																														
CDH1	999	MSKCC	GRCh37	16	68857512	68857512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	117	373	0	ENST00000261769.5:c.2147G>T	p.Gly716Val	p.G716V	ENST00000261769	NM_004360.3	716	gGa/gTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821530	72821530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	229	396	0	ENST00000268489.5:c.10645G>A	p.Glu3549Lys	p.E3549K	ENST00000268489	NM_006885.3	3549	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828204	72828204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	165	550	0	ENST00000268489.5:c.8377G>A	p.Glu2793Lys	p.E2793K	ENST00000268489	NM_006885.3	2793	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828503	72828503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	188	519	0	ENST00000268489.5:c.8078G>A	p.Arg2693Gln	p.R2693Q	ENST00000268489	NM_006885.3	2693	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993335	72993335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	276	690	0	ENST00000268489.5:c.710G>A	p.Arg237Gln	p.R237Q	ENST00000268489	NM_006885.3	237	cGa/cAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81954827	81954827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	118	552	1	ENST00000359376.3:c.2260G>A	p.Asp754Asn	p.D754N	ENST00000359376	NM_002661.3	754	Gac/Aac																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81960742	81960742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	166	639	1	ENST00000359376.3:c.2473G>A	p.Glu825Lys	p.E825K	ENST00000359376	NM_002661.3	825	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81990351	81990351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	208	575	0	ENST00000359376.3:c.3622G>A	p.Glu1208Lys	p.E1208K	ENST00000359376	NM_002661.3	1208	Gaa/Aaa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81990429	81990429	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	175	588	0	ENST00000359376.3:c.3700G>T	p.Glu1234Ter	p.E1234*	ENST00000359376	NM_002661.3	1234	Gag/Tag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89857912	89857912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	203	547	1	ENST00000389301.3:c.1258G>A	p.Glu420Lys	p.E420K	ENST00000389301	NM_000135.2	420	Gag/Aag																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7976219	7976219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	138	459	0	ENST00000319144.4:c.1976G>A	p.Arg659Gln	p.R659Q	ENST00000319144	NM_001139.2	659	cGg/cAg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984460	7984460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	224	567	0	ENST00000319144.4:c.398G>T	p.Arg133Ile	p.R133I	ENST00000319144	NM_001139.2	133	aGa/aTa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024417	16024417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	107	284	1	ENST00000268712.3:c.1801G>A	p.Ala601Thr	p.A601T	ENST00000268712	NM_006311.3	601	Gca/Aca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16089913	16089913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	134	353	1	ENST00000268712.3:c.197G>A	p.Arg66Gln	p.R66Q	ENST00000268712	NM_006311.3	66	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29497004	29497004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	77	255	0	ENST00000358273.4:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000358273	NM_001042492.2	192	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	107	339	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29548950	29548950	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	33	228	0	ENST00000358273.4:c.1721+3A>G		p.X574_splice	ENST00000358273	NM_001042492.2	574																																																																															
NF1	4763	MSKCC	GRCh37	17	29653028	29653028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	120	384	0	ENST00000358273.4:c.5026G>A	p.Ala1676Thr	p.A1676T	ENST00000358273	NM_001042492.2	1676	Gca/Aca																																																																														
NF1	4763	MSKCC	GRCh37	17	29663686	29663686	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	132	477	0	ENST00000358273.4:c.6181A>G	p.Thr2061Ala	p.T2061A	ENST00000358273	NM_001042492.2	2061	Aca/Gca																																																																														
NF1	4763	MSKCC	GRCh37	17	29677216	29677216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	85	360	0	ENST00000358273.4:c.7337C>A	p.Ser2446Tyr	p.S2446Y	ENST00000358273	NM_001042492.2	2446	tCt/tAt																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30302690	30302690	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	96	571	0	ENST00000322652.5:c.781G>T	p.Glu261Ter	p.E261*	ENST00000322652	NM_015355.2	261	Gag/Tag																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30321677	30321677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	147	674	0	ENST00000322652.5:c.1532G>A	p.Gly511Glu	p.G511E	ENST00000322652	NM_015355.2	511	gGa/gAa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325762	30325762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	68	298	0	ENST00000322652.5:c.1960C>T	p.Arg654Ter	p.R654*	ENST00000322652	NM_015355.2	654	Cga/Tga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657655	37657655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	28	553	1	ENST00000447079.4:c.2572C>T	p.Arg858Trp	p.R858W	ENST00000447079	NM_015083.1	858	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37865694	37865694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	182	553	2	ENST00000269571.5:c.563G>A	p.Arg188His	p.R188H	ENST00000269571		188	cGc/cAc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40481459	40481459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	164	563	1	ENST00000264657.5:c.1250G>T	p.Arg417Ile	p.R417I	ENST00000264657	NM_139276.2	417	aGa/aTa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40498636	40498636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	177	468	0	ENST00000264657.5:c.224C>T	p.Ser75Leu	p.S75L	ENST00000264657	NM_139276.2	75	tCg/tTg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40859995	40859995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	150	438	0	ENST00000428826.2:c.1641C>A	p.Phe547Leu	p.F547L	ENST00000428826		547	ttC/ttA																																																																														
EZH1	2145	MSKCC	GRCh37	17	40880886	40880886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	197	661	0	ENST00000428826.2:c.74G>A	p.Arg25Gln	p.R25Q	ENST00000428826		25	cGa/cAa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245260	41245260	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	186	585	1	ENST00000357654.3:c.2288C>A	p.Ser763Tyr	p.S763Y	ENST00000357654	NM_007294.3	763	tCt/tAt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58711228	58711228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	132	537	0	ENST00000305921.3:c.716C>T	p.Ser239Phe	p.S239F	ENST00000305921	NM_003620.3	239	tCt/tTt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761021	59761021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	112	503	1	ENST00000259008.2:c.3386C>T	p.Ser1129Phe	p.S1129F	ENST00000259008	NM_032043.2	1129	tCt/tTt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532456	63532456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	188	548	4	ENST00000307078.5:c.2123C>T	p.Ser708Leu	p.S708L	ENST00000307078	NM_004655.3	708	tCg/tTg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78931486	78931486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	191	506	0	ENST00000306801.3:c.3433C>T	p.Arg1145Trp	p.R1145W	ENST00000306801	NM_020761.2	1145	Cgg/Tgg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936277	78936277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	171	574	0	ENST00000306801.3:c.3709C>T	p.Arg1237Cys	p.R1237C	ENST00000306801	NM_020761.2	1237	Cgc/Tgc																																																																														
YES1	7525	MSKCC	GRCh37	18	743327	743327	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	149	560	0	ENST00000314574.4:c.813A>C	p.Glu271Asp	p.E271D	ENST00000314574	NM_005433.3	271	gaA/gaC																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39609394	39609394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	120	421	0	ENST00000262039.4:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000262039	NM_002647.2	566	Cgt/Tgt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56401549	56401549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	143	447	0	ENST00000348428.3:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000348428	NM_006785.3	471	Gat/Aat																																																																														
BCL2	596	MSKCC	GRCh37	18	60985760	60985760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	80	236	0	ENST00000333681.4:c.140G>T	p.Gly47Val	p.G47V	ENST00000333681		47	gGc/gTc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621011	1621011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	275	788	2	ENST00000344749.5:c.1049C>T	p.Ser350Leu	p.S350L	ENST00000344749	NM_001136139.2	350	tCg/tTg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622223	1622223	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	35	518	0	ENST00000344749.5:c.653-1G>T		p.X218_splice	ENST00000344749	NM_001136139.2	218																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222136	2222136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	235	703	1	ENST00000398665.3:c.2968C>A	p.Leu990Met	p.L990M	ENST00000398665	NM_032482.2	990	Ctg/Atg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110150	3110150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	97	358	0	ENST00000078429.4:c.140C>A	p.Thr47Lys	p.T47K	ENST00000078429	NM_002067.2	47	aCg/aAg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3121094	3121094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	224	638	0	ENST00000078429.4:c.997G>A	p.Asp333Asn	p.D333N	ENST00000078429	NM_002067.2	333	Gac/Aac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208367	5208367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	216	537	0	ENST00000357368.4:c.5523C>A	p.Phe1841Leu	p.F1841L	ENST00000357368	NM_002850.3	1841	ttC/ttA																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	222	617	0	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7125350	7125350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	203	636	0	ENST00000302850.5:c.3202C>T	p.Arg1068Trp	p.R1068W	ENST00000302850	NM_000208.2	1068	Cgg/Tgg																																																																														
INSR	3643	MSKCC	GRCh37	19	7143088	7143088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	191	454	0	ENST00000302850.5:c.2281C>T	p.Arg761Cys	p.R761C	ENST00000302850	NM_000208.2	761	Cgc/Tgc																																																																														
INSR	3643	MSKCC	GRCh37	19	7184622	7184622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	79	240	0	ENST00000302850.5:c.679G>A	p.Gly227Ser	p.G227S	ENST00000302850	NM_000208.2	227	Ggc/Agc																																																																														
INSR	3643	MSKCC	GRCh37	19	7267569	7267569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	239	608	4	ENST00000302850.5:c.439G>A	p.Glu147Lys	p.E147K	ENST00000302850	NM_000208.2	147	Gag/Aag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265322	10265322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	175	490	0	ENST00000340748.4:c.1724T>C	p.Ile575Thr	p.I575T	ENST00000340748		575	aTc/aCc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10283787	10283787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	234	598	1	ENST00000340748.4:c.699G>T	p.Lys233Asn	p.K233N	ENST00000340748		233	aaG/aaT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281566	15281566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	261	744	3	ENST00000263388.2:c.4807G>A	p.Asp1603Asn	p.D1603N	ENST00000263388	NM_000435.2	1603	Gat/Aat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298083	15298083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	266	773	0	ENST00000263388.2:c.1673G>A	p.Arg558His	p.R558H	ENST00000263388	NM_000435.2	558	cGc/cAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349733	15349733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	152	510	1	ENST00000263377.2:c.3841C>T	p.Arg1281Trp	p.R1281W	ENST00000263377	NM_058243.2	1281	Cgg/Tgg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379758	17379758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	211	695	4	ENST00000359435.4:c.143G>A	p.Arg48His	p.R48H	ENST00000359435	NM_001033549.1	48	cGc/cAc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948774	17948774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	248	743	0	ENST00000458235.1:c.1668G>T	p.Lys556Asn	p.K556N	ENST00000458235	NM_000215.3	556	aaG/aaT																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955169	17955169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	228	704	0	ENST00000458235.1:c.58T>C	p.Ser20Pro	p.S20P	ENST00000458235	NM_000215.3	20	Tcc/Ccc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227680	36227680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	234	679	1	ENST00000222270.7:c.7249G>A	p.Glu2417Lys	p.E2417K	ENST00000222270	NM_014727.1	2417	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228145	36228145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	215	655	1	ENST00000222270.7:c.7531C>T	p.Arg2511Trp	p.R2511W	ENST00000222270	NM_014727.1	2511	Cgg/Tgg																																																																														
AXL	558	MSKCC	GRCh37	19	41765733	41765733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	141	472	0	ENST00000301178.4:c.2609C>A	p.Pro870His	p.P870H	ENST00000301178	NM_021913.4	870	cCt/cAt																																																																														
CD79A	973	MSKCC	GRCh37	19	42384741	42384741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	140	441	0	ENST00000221972.3:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000221972	NM_021601.3	168	cGa/cAa																																																																														
ALK	238	MSKCC	GRCh37	2	29462691	29462691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	188	548	1	ENST00000389048.3:c.2210C>T	p.Ser737Leu	p.S737L	ENST00000389048	NM_004304.4	737	tCg/tTg																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47600653	47600653	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	174	609	0	ENST00000263735.4:c.128A>C	p.Asn43Thr	p.N43T	ENST00000263735	NM_002354.2	43	aAt/aCt																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47602407	47602407	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	128	457	0	ENST00000263735.4:c.460G>T	p.Glu154Ter	p.E154*	ENST00000263735	NM_002354.2	154	Gaa/Taa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639687	47639687	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	83	482	0	ENST00000233146.2:c.780A>C	p.Glu260Asp	p.E260D	ENST00000233146	NM_000251.2	260	gaA/gaC																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693898	47693898	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	121	410	0	ENST00000233146.2:c.1612A>G	p.Asn538Asp	p.N538D	ENST00000233146	NM_000251.2	538	Aac/Gac																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719851	61719851	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	119	526	0	ENST00000401558.2:c.1417G>T	p.Glu473Ter	p.E473*	ENST00000401558	NM_003400.3	473	Gaa/Taa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719862	61719862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	114	497	0	ENST00000401558.2:c.1406A>G	p.Tyr469Cys	p.Y469C	ENST00000401558	NM_003400.3	469	tAt/tGt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61720080	61720080	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	103	422	0	ENST00000401558.2:c.1354A>C	p.Asn452His	p.N452H	ENST00000401558	NM_003400.3	452	Aat/Cat																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99163060	99163060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	142	418	0	ENST00000074304.5:c.1066G>A	p.Asp356Asn	p.D356N	ENST00000074304	NM_001134224.1	356	Gac/Aac																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182172	99182172	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	223	527	0	ENST00000074304.5:c.2237T>C	p.Val746Ala	p.V746A	ENST00000074304	NM_001134224.1	746	gTc/gCc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128036890	128036890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	181	576	0	ENST00000285398.2:c.1589G>A	p.Arg530Gln	p.R530Q	ENST00000285398	NM_000122.1	530	cGa/cAa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257155	198257155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	110	400	0	ENST00000335508.6:c.3787G>A	p.Asp1263Asn	p.D1263N	ENST00000335508	NM_012433.2	1263	Gat/Aat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267698	198267698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	115	417	3	ENST00000335508.6:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000335508	NM_012433.2	594	cGa/cAa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209106814	209106814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	159	577	0	ENST00000345146.2:c.754G>A	p.Asp252Asn	p.D252N	ENST00000345146	NM_005896.2	252	Gac/Aac																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	53	269	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543838	212543838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	192	470	0	ENST00000342788.4:c.1561C>A	p.Leu521Met	p.L521M	ENST00000342788	NM_005235.2	521	Ctg/Atg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570063	212570063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	103	494	0	ENST00000342788.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000342788	NM_005235.2	393	cGg/cAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812335	212812335	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	90	295	1	ENST00000342788.4:c.241C>T	p.Arg81Ter	p.R81*	ENST00000342788	NM_005235.2	81	Cga/Tga																																																																														
CUL3	8452	MSKCC	GRCh37	2	225339038	225339038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	123	471	0	ENST00000264414.4:c.2231G>A	p.Arg744His	p.R744H	ENST00000264414	NM_003590.4	744	cGt/cAt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793242	242793242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	216	685	0	ENST00000334409.5:c.835C>T	p.Pro279Ser	p.P279S	ENST00000334409	NM_005018.2	279	Cct/Tct																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561147	9561147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	91	349	0	ENST00000353224.5:c.635A>G	p.Tyr212Cys	p.Y212C	ENST00000353224	NM_177990.2	212	tAc/tGc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022586	31022586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	185	564	0	ENST00000375687.4:c.2071C>A	p.Leu691Ile	p.L691I	ENST00000375687	NM_015338.5	691	Cta/Ata																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024220	31024220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	165	547	0	ENST00000375687.4:c.3705C>A	p.Phe1235Leu	p.F1235L	ENST00000375687	NM_015338.5	1235	ttC/ttA																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024239	31024239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	28	491	0	ENST00000375687.4:c.3724G>A	p.Asp1242Asn	p.D1242N	ENST00000375687	NM_015338.5	1242	Gat/Aat																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31388006	31388006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	155	409	0	ENST00000328111.2:c.1807G>A	p.Ala603Thr	p.A603T	ENST00000328111	NM_006892.3	603	Gct/Act																																																																														
SRC	6714	MSKCC	GRCh37	20	36031262	36031262	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	150	547	0	ENST00000358208.4:c.1381A>T	p.Lys461Ter	p.K461*	ENST00000358208		461	Aag/Tag																																																																														
TOP1	7150	MSKCC	GRCh37	20	39704821	39704821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	48	237	0	ENST00000361337.2:c.166G>T	p.Asp56Tyr	p.D56Y	ENST00000361337	NM_003286.2	56	Gat/Tat																																																																														
TOP1	7150	MSKCC	GRCh37	20	39708808	39708808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183058581		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	63	279	0	ENST00000361337.2:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000361337	NM_003286.2	140	cGa/cAa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39725915	39725915	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	132	403	0	ENST00000361337.2:c.786A>T	p.Lys262Asn	p.K262N	ENST00000361337	NM_003286.2	262	aaA/aaT																																																																														
TOP1	7150	MSKCC	GRCh37	20	39744072	39744072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	130	343	0	ENST00000361337.2:c.1700G>T	p.Arg567Ile	p.R567I	ENST00000361337	NM_003286.2	567	aGa/aTa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265181	46265181	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	102	386	0	ENST00000371998.3:c.2051T>A	p.Ile684Asn	p.I684N	ENST00000371998		684	aTt/aAt																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62309650	62309650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	157	487	0	ENST00000508582.2:c.1060G>A	p.Asp354Asn	p.D354N	ENST00000508582		354	Gat/Aat																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319887	62319887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	192	577	1	ENST00000508582.2:c.1801G>A	p.Asp601Asn	p.D601N	ENST00000508582		601	Gac/Aac																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42843782	42843782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	199	538	0	ENST00000398585.3:c.1137G>T	p.Lys379Asn	p.K379N	ENST00000398585	NM_001135099.1	379	aaG/aaT																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288474	21288474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	40	576	0	ENST00000354336.3:c.719C>T	p.Ala240Val	p.A240V	ENST00000354336	NM_005207.3	240	gCg/gTg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24159001	24159001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	226	635	1	ENST00000263121.7:c.673G>A	p.Asp225Asn	p.D225N	ENST00000263121	NM_003073.3	225	Gat/Aat																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29106023	29106023	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	93	346	0	ENST00000328354.6:c.817G>T	p.Glu273Ter	p.E273*	ENST00000328354	NM_007194.3	273	Gaa/Taa																																																																														
EP300	2033	MSKCC	GRCh37	22	41525996	41525996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	121	457	1	ENST00000263253.7:c.1271G>A	p.Arg424Lys	p.R424K	ENST00000263253	NM_001429.3	424	aGa/aAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41573597	41573597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	195	625	2	ENST00000263253.7:c.5882C>T	p.Pro1961Leu	p.P1961L	ENST00000263253	NM_001429.3	1961	cCc/cTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574832	41574832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	206	577	0	ENST00000263253.7:c.7117C>A	p.Leu2373Ile	p.L2373I	ENST00000263253	NM_001429.3	2373	Ctt/Att																																																																														
RAF1	5894	MSKCC	GRCh37	3	12632321	12632321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	172	539	0	ENST00000251849.4:c.1346C>T	p.Ala449Val	p.A449V	ENST00000251849	NM_002880.3	449	gCc/gTc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713543	30713543	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	177	442	0	ENST00000359013.4:c.943G>T	p.Glu315Ter	p.E315*	ENST00000359013	NM_001024847.2	315	Gag/Tag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729875	30729875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	85	273	0	ENST00000359013.4:c.1472-1G>T		p.X491_splice	ENST00000359013	NM_001024847.2	491																																																																															
MLH1	4292	MSKCC	GRCh37	3	37058999	37058999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	33	387	2	ENST00000231790.2:c.793C>T	p.Arg265Cys	p.R265C	ENST00000231790	NM_000249.3	265	Cgt/Tgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47147533	47147533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	125	470	0	ENST00000409792.3:c.4793G>A	p.Arg1598Gln	p.R1598Q	ENST00000409792	NM_014159.6	1598	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165078	47165078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	54	237	0	ENST00000409792.3:c.1048G>T	p.Asp350Tyr	p.D350Y	ENST00000409792	NM_014159.6	350	Gat/Tat																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799799	72799799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	145	465	1	ENST00000325599.8:c.1370C>T	p.Ser457Leu	p.S457L	ENST00000325599	NM_018130.2	457	tCg/tTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259357	89259357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	120	404	0	ENST00000336596.2:c.501G>T	p.Glu167Asp	p.E167D	ENST00000336596	NM_005233.5	167	gaG/gaT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390935	89390935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	131	422	0	ENST00000336596.2:c.1001C>A	p.Ser334Tyr	p.S334Y	ENST00000336596	NM_005233.5	334	tCt/tAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462293	89462293	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	90	384	0	ENST00000336596.2:c.1765A>C	p.Lys589Gln	p.K589Q	ENST00000336596	NM_005233.5	589	Aaa/Caa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468381	89468381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	79	213	0	ENST00000336596.2:c.1915C>T	p.Arg639Cys	p.R639C	ENST00000336596	NM_005233.5	639	Cgc/Tgc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468457	89468457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	88	384	0	ENST00000336596.2:c.1991G>T	p.Arg664Met	p.R664M	ENST00000336596	NM_005233.5	664	aGg/aTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499433	89499433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	148	452	0	ENST00000336596.2:c.2603G>T	p.Arg868Ile	p.R868I	ENST00000336596	NM_005233.5	868	aGa/aTa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138456592	138456592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	148	598	0	ENST00000289153.2:c.758G>T	p.Arg253Ile	p.R253I	ENST00000289153	NM_006219.2	253	aGa/aTa																																																																														
ATR	545	MSKCC	GRCh37	3	142226801	142226801	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	61	342	0	ENST00000350721.4:c.5003A>C	p.Asn1668Thr	p.N1668T	ENST00000350721	NM_001184.3	1668	aAt/aCt																																																																														
ATR	545	MSKCC	GRCh37	3	142269003	142269003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	121	418	0	ENST00000350721.4:c.2947G>A	p.Asp983Asn	p.D983N	ENST00000350721	NM_001184.3	983	Gac/Aac																																																																														
ATR	545	MSKCC	GRCh37	3	142274725	142274725	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	69	235	0	ENST00000350721.4:c.2335A>C	p.Lys779Gln	p.K779Q	ENST00000350721	NM_001184.3	779	Aaa/Caa																																																																														
ATR	545	MSKCC	GRCh37	3	142275369	142275369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	107	497	2	ENST00000350721.4:c.1934G>T	p.Arg645Ile	p.R645I	ENST00000350721	NM_001184.3	645	aGa/aTa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260177	149260177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	154	483	0	ENST00000360632.3:c.716G>T	p.Arg239Ile	p.R239I	ENST00000360632	NM_015472.4	239	aGa/aTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	149	519	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951949	178951949	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	135	422	0	ENST00000263967.3:c.3004T>G	p.Phe1002Val	p.F1002V	ENST00000263967	NM_006218.2	1002	Ttc/Gtc																																																																														
BCL6	604	MSKCC	GRCh37	3	187451339	187451339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200263685		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	86	389	0	ENST00000232014.4:c.143C>T	p.Thr48Met	p.T48M	ENST00000232014	NM_001130845.1	48	aCg/aTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189590683	189590683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	187	514	0	ENST00000264731.3:c.1248G>T	p.Lys416Asn	p.K416N	ENST00000264731	NM_003722.4	416	aaG/aaT																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1919931	1919931	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	206	538	1	ENST00000382891.5:c.991G>T	p.Glu331Ter	p.E331*	ENST00000382891	NM_133335.3	331	Gaa/Taa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1955068	1955068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	184	561	0	ENST00000382891.5:c.2155G>A	p.Val719Met	p.V719M	ENST00000382891	NM_133335.3	719	Gtg/Atg																																																																														
KIT	3815	MSKCC	GRCh37	4	55564615	55564615	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149092990		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	145	498	0	ENST00000288135.5:c.503C>T	p.Ala168Val	p.A168V	ENST00000288135	NM_000222.2	168	gCg/gTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55948714	55948714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	123	497	1	ENST00000263923.4:c.3751G>A	p.Val1251Ile	p.V1251I	ENST00000263923	NM_002253.2	1251	Gta/Ata																																																																														
KDR	3791	MSKCC	GRCh37	4	55960978	55960978	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	112	350	0	ENST00000263923.4:c.2962G>T	p.Glu988Ter	p.E988*	ENST00000263923	NM_002253.2	988	Gaa/Taa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467464	66467464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	80	246	0	ENST00000273854.3:c.805G>A	p.Asp269Asn	p.D269N	ENST00000273854	NM_004439.5	269	Gat/Aat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467565	66467565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	129	325	0	ENST00000273854.3:c.704C>A	p.Ser235Tyr	p.S235Y	ENST00000273854	NM_004439.5	235	tCt/tAt																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84383972	84383972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	126	486	1	ENST00000321945.7:c.880C>A	p.Leu294Ile	p.L294I	ENST00000321945	NM_139076.2	294	Ctt/Att																																																																														
TET2	54790	MSKCC	GRCh37	4	106196283	106196283	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	70	218	0	ENST00000380013.4:c.4616A>T	p.Gln1539Leu	p.Q1539L	ENST00000380013	NM_001127208.2	1539	cAg/cTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251891	153251891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	102	381	0	ENST00000281708.4:c.1115C>A	p.Ser372Tyr	p.S372Y	ENST00000281708	NM_033632.3	372	tCt/tAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518260	187518260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	78	210	0	ENST00000441802.2:c.12434C>T	p.Thr4145Met	p.T4145M	ENST00000441802	NM_005245.3	4145	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532732	187532732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	165	507	0	ENST00000441802.2:c.9661C>A	p.Leu3221Ile	p.L3221I	ENST00000441802	NM_005245.3	3221	Ctt/Att																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540815	187540815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	84	317	0	ENST00000441802.2:c.6925G>A	p.Asp2309Asn	p.D2309N	ENST00000441802	NM_005245.3	2309	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554954	187554954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	79	367	0	ENST00000441802.2:c.4207G>A	p.Asp1403Asn	p.D1403N	ENST00000441802	NM_005245.3	1403	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584696	187584696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144526682		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	153	551	1	ENST00000441802.2:c.3337G>A	p.Asp1113Asn	p.D1113N	ENST00000441802	NM_005245.3	1113	Gat/Aat																																																																														
SDHA	6389	MSKCC	GRCh37	5	223684	223684	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	101	343	1	ENST00000264932.6:c.150+1G>A		p.X50_splice	ENST00000264932	NM_004168.2	50																																																																															
IL7R	3575	MSKCC	GRCh37	5	35871196	35871196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	80	380	0	ENST00000303115.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000303115	NM_002185.3	140	Cgg/Tgg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950622	38950622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	76	420	0	ENST00000357387.3:c.3328C>T	p.Arg1110Cys	p.R1110C	ENST00000357387	NM_152756.3	1110	Cgt/Tgt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950726	38950726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	65	270	0	ENST00000357387.3:c.3224G>A	p.Arg1075Gln	p.R1075Q	ENST00000357387	NM_152756.3	1075	cGa/cAa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38964916	38964916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	55	267	0	ENST00000357387.3:c.1378G>T	p.Asp460Tyr	p.D460Y	ENST00000357387	NM_152756.3	460	Gat/Tat																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160589	56160589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	95	331	1	ENST00000399503.3:c.863G>A	p.Arg288Gln	p.R288Q	ENST00000399503	NM_005921.1	288	cGa/cAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189415	56189415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	172	571	1	ENST00000399503.3:c.4447G>T	p.Asp1483Tyr	p.D1483Y	ENST00000399503	NM_005921.1	1483	Gat/Tat																																																																														
RASA1	5921	MSKCC	GRCh37	5	86648973	86648973	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	104	325	0	ENST00000274376.6:c.1254-1G>A		p.X418_splice	ENST00000274376	NM_002890.2	418																																																																															
RASA1	5921	MSKCC	GRCh37	5	86672366	86672366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	81	319	0	ENST00000274376.6:c.2168A>G	p.Tyr723Cys	p.Y723C	ENST00000274376	NM_002890.2	723	tAc/tGc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672759	86672759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	83	391	0	ENST00000274376.6:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000274376	NM_002890.2	749	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672800	86672800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	89	320	2	ENST00000274376.6:c.2287G>A	p.Glu763Lys	p.E763K	ENST00000274376	NM_002890.2	763	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112090657	112090657	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs145945630		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	87	413	0	ENST00000257430.4:c.70C>T	p.Arg24Ter	p.R24*	ENST00000257430	NM_000038.5	24	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112154771	112154771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	124	414	0	ENST00000257430.4:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000257430	NM_000038.5	348	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173303	112173303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	74	242	0	ENST00000257430.4:c.2012C>A	p.Ser671Tyr	p.S671Y	ENST00000257430	NM_000038.5	671	tCt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	120	352	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112176411	112176411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	12	281	0	ENST00000257430.4:c.5120C>A	p.Ser1707Tyr	p.S1707Y	ENST00000257430	NM_000038.5	1707	tCt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112176873	112176873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	111	370	0	ENST00000257430.4:c.5582C>T	p.Ser1861Phe	p.S1861F	ENST00000257430	NM_000038.5	1861	tCt/tTt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923334	131923334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	87	354	0	ENST00000265335.6:c.837G>T	p.Lys279Asn	p.K279N	ENST00000265335		279	aaG/aaT																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502666	149502666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	155	434	0	ENST00000261799.4:c.2122C>T	p.Arg708Cys	p.R708C	ENST00000261799	NM_002609.3	708	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562545	176562545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	139	574	0	ENST00000439151.2:c.441G>T	p.Lys147Asn	p.K147N	ENST00000439151	NM_022455.4	147	aaG/aaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562806	176562806	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	220	559	0	ENST00000439151.2:c.702A>T	p.Glu234Asp	p.E234D	ENST00000439151	NM_022455.4	234	gaA/gaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636899	176636899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	147	505	0	ENST00000439151.2:c.1499G>T	p.Arg500Ile	p.R500I	ENST00000439151	NM_022455.4	500	aGa/aTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176700781	176700781	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	102	425	0	ENST00000439151.2:c.5618T>A	p.Ile1873Lys	p.I1873K	ENST00000439151	NM_022455.4	1873	aTa/aAa																																																																														
IRF4	3662	MSKCC	GRCh37	6	407593	407593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	116	375	2	ENST00000380956.4:c.1351G>A	p.Glu451Lys	p.E451K	ENST00000380956	NM_001195286.1	451	Gaa/Aaa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20486948	20486948	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	101	369	0	ENST00000346618.3:c.913C>T	p.Arg305Ter	p.R305*	ENST00000346618	NM_001949.4	305	Cga/Tga																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271369	26271369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	72	354	0	ENST00000305910.3:c.244G>T	p.Asp82Tyr	p.D82Y	ENST00000305910	NM_003534.2	82	Gat/Tat																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672385	30672385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	143	378	0	ENST00000376406.3:c.4575G>T	p.Lys1525Asn	p.K1525N	ENST00000376406	NM_014641.2	1525	aaG/aaT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675778	30675778	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	54	691	0	ENST00000376406.3:c.2578G>T	p.Glu860Ter	p.E860*	ENST00000376406	NM_014641.2	860	Gaa/Taa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681043	30681043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	129	403	0	ENST00000376406.3:c.676C>A	p.Gln226Lys	p.Q226K	ENST00000376406	NM_014641.2	226	Cag/Aag																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805417	32805417	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	60	687	0	ENST00000374899.4:c.505A>C	p.Ile169Leu	p.I169L	ENST00000374899	NM_018833.2	169	Atc/Ctc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288180	33288180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	142	330	1	ENST00000374542.5:c.1228G>A	p.Glu410Lys	p.E410K	ENST00000374542	NM_001141970.1	410	Gaa/Aaa																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64290057	64290057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	127	479	0	ENST00000370651.3:c.500G>T	p.Arg167Ile	p.R167I	ENST00000370651	NM_003463.4	167	aGa/aTa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94124422	94124422	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	73	350	1	ENST00000369303.4:c.161G>A	p.Gly54Glu	p.G54E	ENST00000369303	NM_004440.3	54	gGg/gAg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555141	106555141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	191	572	0	ENST00000369096.4:c.2258C>A	p.Ser753Tyr	p.S753Y	ENST00000369096	NM_001198.3	753	tCt/tAt																																																																														
FYN	2534	MSKCC	GRCh37	6	112041037	112041037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	122	411	0	ENST00000368678.4:c.218C>T	p.Thr73Met	p.T73M	ENST00000368678		73	aCg/aTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622241	117622241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	245	398	1	ENST00000368508.3:c.6629G>T	p.Arg2210Ile	p.R2210I	ENST00000368508	NM_002944.2	2210	aGa/aTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117665253	117665253	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	90	274	0	ENST00000368508.3:c.4494A>C	p.Lys1498Asn	p.K1498N	ENST00000368508	NM_002944.2	1498	aaA/aaC																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710971	117710971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	66	250	0	ENST00000368508.3:c.1301C>G	p.Ala434Gly	p.A434G	ENST00000368508	NM_002944.2	434	gCa/gGa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199638	138199638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	130	472	0	ENST00000237289.4:c.1056G>T	p.Glu352Asp	p.E352D	ENST00000237289	NM_001270507.1	352	gaG/gaT																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202346	138202346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	179	543	1	ENST00000237289.4:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000237289	NM_001270507.1	755	Gaa/Aaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527796	157527796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	145	382	1	ENST00000346085.5:c.5521C>A	p.Pro1841Thr	p.P1841T	ENST00000346085	NM_020732.3	1841	Cct/Act																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528094	157528094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	172	425	0	ENST00000346085.5:c.5819C>T	p.Ser1940Leu	p.S1940L	ENST00000346085	NM_020732.3	1940	tCg/tTg																																																																														
PARK2	5071	MSKCC	GRCh37	6	162475207	162475207	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	95	370	0	ENST00000366898.1:c.535-1G>T		p.X179_splice	ENST00000366898	NM_004562.2	179																																																																															
ETV1	2115	MSKCC	GRCh37	7	13949266	13949266	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	52	353	0	ENST00000405192.2:c.862A>C	p.Lys288Gln	p.K288Q	ENST00000405192	NM_001163147.1	288	Aaa/Caa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468032	50468032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	114	366	0	ENST00000331340.3:c.1267C>T	p.Arg423Cys	p.R423C	ENST00000331340	NM_006060.4	423	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223604	55223604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	158	413	2	ENST00000275493.2:c.971G>A	p.Arg324His	p.R324H	ENST00000275493	NM_005228.3	324	cGc/cAc																																																																														
MET	4233	MSKCC	GRCh37	7	116412972	116412972	+	intron_variant	Intron	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	206	759	1	ENST00000397752.3:c.3028+929G>A		p.*1010*	ENST00000397752	NM_000245.2																																																																																
MET	4233	MSKCC	GRCh37	7	116413119	116413119	+	intron_variant	Intron	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	149	495	0	ENST00000397752.3:c.3028+1076T>G		p.*1010*	ENST00000397752	NM_000245.2																																																																																
MET	4233	MSKCC	GRCh37	7	116423392	116423392	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	102	354	0	ENST00000397752.3:c.3667T>G	p.Phe1223Val	p.F1223V	ENST00000397752	NM_000245.2	1223	Ttt/Gtt																																																																														
SMO	6608	MSKCC	GRCh37	7	128850898	128850898	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	199	640	0	ENST00000249373.3:c.1745A>C	p.Asn582Thr	p.N582T	ENST00000249373	NM_005631.4	582	aAc/aCc																																																																														
BRAF	673	MSKCC	GRCh37	7	140487360	140487360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507472		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	190	602	1	ENST00000288602.6:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000288602	NM_004333.4	389	Cgt/Tgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836764	151836764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	129	376	0	ENST00000262189.6:c.14456C>A	p.Ser4819Tyr	p.S4819Y	ENST00000262189	NM_170606.2	4819	tCt/tAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151846227	151846227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	136	445	0	ENST00000262189.6:c.12785C>A	p.Pro4262His	p.P4262H	ENST00000262189	NM_170606.2	4262	cCt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878694	151878694	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	91	326	0	ENST00000262189.6:c.6251A>C	p.Asn2084Thr	p.N2084T	ENST00000262189	NM_170606.2	2084	aAt/aCt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891322	151891322	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	117	402	0	ENST00000262189.6:c.4532A>C	p.Lys1511Thr	p.K1511T	ENST00000262189	NM_170606.2	1511	aAa/aCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945054	151945054	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	48	585	0	ENST00000262189.6:c.2465A>C	p.Lys822Thr	p.K822T	ENST00000262189	NM_170606.2	822	aAa/aCa																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538990	23538990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	156	501	4	ENST00000380871.4:c.449C>T	p.Ser150Leu	p.S150L	ENST00000380871	NM_006167.3	150	tCg/tTg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207369	29207369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	77	265	0	ENST00000240100.2:c.427C>A	p.Leu143Ile	p.L143I	ENST00000240100	NM_001394.6	143	Ctc/Atc																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38157028	38157028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	157	646	0	ENST00000317025.8:c.2692C>T	p.Arg898Cys	p.R898C	ENST00000317025	NM_023034.1	898	Cgt/Tgt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38314972	38314972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	222	752	1	ENST00000425967.3:c.92G>T	p.Arg31Ile	p.R31I	ENST00000425967	NM_001174067.1	31	aGa/aTa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370819	55370819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	159	518	1	ENST00000297316.4:c.121G>T	p.Asp41Tyr	p.D41Y	ENST00000297316	NM_022454.3	41	Gac/Tac																																																																														
LYN	4067	MSKCC	GRCh37	8	56866516	56866516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	299	680	0	ENST00000519728.1:c.763G>A	p.Ala255Thr	p.A255T	ENST00000519728	NM_002350.3	255	Gct/Act																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942833	68942833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	215	666	0	ENST00000288368.4:c.645G>T	p.Lys215Asn	p.K215N	ENST00000288368	NM_024870.2	215	aaG/aaT																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005843	69005843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	87	392	0	ENST00000288368.4:c.2254G>A	p.Asp752Asn	p.D752N	ENST00000288368	NM_024870.2	752	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021782	69021782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	198	684	1	ENST00000288368.4:c.3070G>T	p.Asp1024Tyr	p.D1024Y	ENST00000288368	NM_024870.2	1024	Gac/Tac																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964530	70964530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	129	564	0	ENST00000276594.2:c.1498G>T	p.Ala500Ser	p.A500S	ENST00000276594	NM_024504.3	500	Gcc/Tcc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980604	70980604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	189	566	0	ENST00000276594.2:c.773C>T	p.Thr258Met	p.T258M	ENST00000276594	NM_024504.3	258	aCg/aTg																																																																														
TCEB1	6921	MSKCC	GRCh37	8	74858992	74858992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	77	220	0	ENST00000284811.8:c.212C>T	p.Ser71Leu	p.S71L	ENST00000284811		71	tCg/tTg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737123	145737123	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35346077		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	197	588	0	ENST00000428558.2:c.3443C>T	p.Ser1148Phe	p.S1148F	ENST00000428558	NM_004260.3	1148	tCc/tTc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5021963	5021963	+	splice_region_variant,5_prime_UTR_variant	Splice_Region	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	72	262	0	ENST00000381652.3:c.-25G>A		p.X9_splice	ENST00000381652	NM_004972.3	9																																																																															
JAK2	3717	MSKCC	GRCh37	9	5050746	5050746	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	122	500	0	ENST00000381652.3:c.529G>T	p.Glu177Ter	p.E177*	ENST00000381652	NM_004972.3	177	Gaa/Taa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5050780	5050780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	128	542	0	ENST00000381652.3:c.563G>T	p.Arg188Ile	p.R188I	ENST00000381652	NM_004972.3	188	aGa/aTa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5066739	5066739	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	99	405	0	ENST00000381652.3:c.1276C>T	p.Arg426Ter	p.R426*	ENST00000381652	NM_004972.3	426	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341849	8341849	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	118	584	0	ENST00000356435.5:c.4791A>C	p.Gln1597His	p.Q1597H	ENST00000356435		1597	caA/caC																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389318	8389318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	138	596	1	ENST00000356435.5:c.4300G>A	p.Glu1434Lys	p.E1434K	ENST00000356435		1434	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404587	8404587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	74	307	0	ENST00000356435.5:c.4160C>T	p.Ala1387Val	p.A1387V	ENST00000356435		1387	gCg/gTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484270	8484270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	151	497	0	ENST00000356435.5:c.3262C>T	p.Arg1088Cys	p.R1088C	ENST00000356435		1088	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485311	8485311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	114	455	0	ENST00000356435.5:c.3069T>A	p.Asn1023Lys	p.N1023K	ENST00000356435		1023	aaT/aaA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528626	8528626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	110	391	0	ENST00000356435.5:c.506G>A	p.Ser169Asn	p.S169N	ENST00000356435		169	aGc/aAc																																																																														
TEK	7010	MSKCC	GRCh37	9	27197433	27197433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	239	619	0	ENST00000380036.4:c.1745C>A	p.Ser582Tyr	p.S582Y	ENST00000380036	NM_000459.3	582	tCt/tAt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87356842	87356842	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	83	403	0	ENST00000277120.3:c.1195G>T	p.Asp399Tyr	p.D399Y	ENST00000277120		399	Gat/Tat																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570334	87570334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	200	586	1	ENST00000277120.3:c.2074G>A	p.Asp692Asn	p.D692N	ENST00000277120		692	Gat/Aat																																																																														
FANCC	2176	MSKCC	GRCh37	9	98009794	98009794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	67	329	0	ENST00000289081.3:c.170C>A	p.Ser57Tyr	p.S57Y	ENST00000289081	NM_000136.2	57	tCt/tAt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231113	98231113	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144501989		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	173	388	1	ENST00000331920.6:c.2170G>A	p.Glu724Lys	p.E724K	ENST00000331920	NM_000264.3	724	Gag/Aag																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128246746	128246746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	156	517	0	ENST00000265960.3:c.1183C>T	p.Arg395Ter	p.R395*	ENST00000265960	NM_001006617.1	395	Cga/Tga																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781388	135781388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	192	490	0	ENST00000298552.3:c.1577C>A	p.Ser526Tyr	p.S526Y	ENST00000298552	NM_001162426.1	526	tCt/tAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404312	139404312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	226	653	1	ENST00000277541.6:c.2842G>A	p.Glu948Lys	p.E948K	ENST00000277541	NM_017617.3	948	Gag/Aag																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564688	139564688	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	269	846	0	ENST00000308874.7:c.477C>A	p.Tyr159Ter	p.Y159*	ENST00000308874		159	taC/taA																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15833871	15833871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	67	294	0	ENST00000307771.7:c.629G>A	p.Gly210Glu	p.G210E	ENST00000307771	NM_005089.3	210	gGa/gAa																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15834005	15834005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	332	712	0	ENST00000307771.7:c.763C>A	p.Gln255Lys	p.Q255K	ENST00000307771	NM_005089.3	255	Cag/Aag																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156690	20156690	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	139	591	0	ENST00000379607.5:c.67A>G	p.Lys23Glu	p.K23E	ENST00000379607	NM_001412.3	23	Aaa/Gaa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923796	39923796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	242	737	0	ENST00000378444.4:c.3295G>T	p.Asp1099Tyr	p.D1099Y	ENST00000378444	NM_001123385.1	1099	Gat/Tat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932447	39932447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	178	575	0	ENST00000378444.4:c.2152G>T	p.Asp718Tyr	p.D718Y	ENST00000378444	NM_001123385.1	718	Gat/Tat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933872	39933872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	53	664	1	ENST00000378444.4:c.727C>T	p.Arg243Cys	p.R243C	ENST00000378444	NM_001123385.1	243	Cgc/Tgc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44936066	44936066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	141	563	0	ENST00000377967.4:c.2827A>G	p.Ile943Val	p.I943V	ENST00000377967	NM_021140.2	943	Att/Gtt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028882	47028882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	148	510	0	ENST00000329236.7:c.186G>T	p.Glu62Asp	p.E62D	ENST00000329236	NM_001204466.1	62	gaG/gaT																																																																														
ARAF	369	MSKCC	GRCh37	X	47426737	47426737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200106543		P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	213	635	2	ENST00000377045.4:c.982C>T	p.Arg328Trp	p.R328W	ENST00000377045	NM_001654.4	328	Cgg/Tgg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411267	63411267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	210	574	1	ENST00000330258.3:c.1900C>T	p.Arg634Cys	p.R634C	ENST00000330258	NM_152424.3	634	Cgt/Tgt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411888	63411888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	54	935	0	ENST00000330258.3:c.1279C>T	p.Pro427Ser	p.P427S	ENST00000330258	NM_152424.3	427	Ccc/Tcc																																																																														
MED12	9968	MSKCC	GRCh37	X	70339654	70339654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	260	711	0	ENST00000374080.3:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000374080		108	cGa/cAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70344018	70344018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	185	643	0	ENST00000374080.3:c.1754G>A	p.Arg585Gln	p.R585Q	ENST00000374080		585	cGa/cAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70348502	70348502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	183	526	0	ENST00000374080.3:c.3409G>A	p.Ala1137Thr	p.A1137T	ENST00000374080		1137	Gct/Act																																																																														
MED12	9968	MSKCC	GRCh37	X	70349577	70349577	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	199	642	1	ENST00000374080.3:c.3739G>T	p.Glu1247Ter	p.E1247*	ENST00000374080		1247	Gaa/Taa																																																																														
MED12	9968	MSKCC	GRCh37	X	70352366	70352366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	226	562	0	ENST00000374080.3:c.4393C>T	p.Arg1465Cys	p.R1465C	ENST00000374080		1465	Cgt/Tgt																																																																														
ATRX	546	MSKCC	GRCh37	X	76891498	76891498	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	147	483	0	ENST00000373344.5:c.4607A>C	p.Lys1536Thr	p.K1536T	ENST00000373344	NM_000489.3	1536	aAg/aCg																																																																														
ATRX	546	MSKCC	GRCh37	X	76909588	76909588	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	115	440	0	ENST00000373344.5:c.4317G>T	p.Lys1439Asn	p.K1439N	ENST00000373344	NM_000489.3	1439	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76938854	76938854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	138	612	0	ENST00000373344.5:c.1894G>A	p.Glu632Lys	p.E632K	ENST00000373344	NM_000489.3	632	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939266	76939266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	140	577	1	ENST00000373344.5:c.1482G>T	p.Lys494Asn	p.K494N	ENST00000373344	NM_000489.3	494	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76940499	76940499	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	84	455	0	ENST00000373344.5:c.595-1G>T		p.X199_splice	ENST00000373344	NM_000489.3	199																																																																															
ATRX	546	MSKCC	GRCh37	X	76949323	76949323	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	108	376	0	ENST00000373344.5:c.474A>C	p.Lys158Asn	p.K158N	ENST00000373344	NM_000489.3	158	aaA/aaC																																																																														
BTK	695	MSKCC	GRCh37	X	100625040	100625040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	99	509	0	ENST00000308731.7:c.337G>A	p.Val113Ile	p.V113I	ENST00000308731	NM_000061.2	113	Gtc/Atc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185178	123185178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	95	431	0	ENST00000218089.9:c.1130C>A	p.Ser377Tyr	p.S377Y	ENST00000218089	NM_001042749.1	377	tCt/tAt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123189977	123189977	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	128	516	0	ENST00000218089.9:c.1197-1G>T		p.X399_splice	ENST00000218089	NM_001042749.1	399																																																																															
STAG2	10735	MSKCC	GRCh37	X	123189988	123189988	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	148	565	1	ENST00000218089.9:c.1207G>T	p.Glu403Ter	p.E403*	ENST00000218089	NM_001042749.1	403	Gaa/Taa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200027	123200027	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	56	223	0	ENST00000218089.9:c.2099C>T	p.Ala700Val	p.A700V	ENST00000218089	NM_001042749.1	700	gCc/gTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224539	123224539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	183	675	0	ENST00000218089.9:c.3392G>T	p.Arg1131Ile	p.R1131I	ENST00000218089	NM_001042749.1	1131	aGa/aTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	138	272	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	101	517	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	110	615	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	353	625	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	46	594	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495384	56495384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	50	665	0	ENST00000267101.3:c.3574G>C	p.Asp1192His	p.D1192H	ENST00000267101	NM_001982.3	1192	Gat/Cat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307261	118307261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	14	152	0	ENST00000534358.1:c.34C>G	p.Arg12Gly	p.R12G	ENST00000534358	NM_005933.3	12	Cga/Gga																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022677	12022677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	34	520	0	ENST00000396373.4:c.783G>C	p.Glu261Asp	p.E261D	ENST00000396373	NM_001987.4	261	gaG/gaC																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628639	21628639	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	57	728	0	ENST00000421138.2:c.1069C>G	p.His357Asp	p.H357D	ENST00000421138		357	Cat/Gat																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701862	43701862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	42	426	0	ENST00000382044.4:c.5383G>A	p.Asp1795Asn	p.D1795N	ENST00000382044	NM_001141980.1	1795	Gat/Aat																																																																														
CDH1	999	MSKCC	GRCh37	16	68856017	68856017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	58	740	0	ENST00000261769.5:c.1825C>T	p.Pro609Ser	p.P609S	ENST00000261769	NM_004360.3	609	Cct/Tct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821576	72821619	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCAGGCAGTGGTACGAGCCGCCGCCGCCGCCGCCGCCGCCAC	CGCCAGGCAGTGGTACGAGCCGCCGCCGCCGCCGCCGCCGCCAC	-			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	69	171	0	ENST00000268489.5:c.10556_10599del	p.Gly3519ValfsTer37	p.G3519Vfs*37	ENST00000268489	NM_006885.3	3519	gGTGGCGGCGGCGGCGGCGGCGGCGGCTCGTACCACTGCCTGGCG/g																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221756	36221756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	70	700	1	ENST00000222270.7:c.5425G>A	p.Ala1809Thr	p.A1809T	ENST00000222270	NM_014727.1	1809	Gcc/Acc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52661374	52661374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	27	405	0	ENST00000394830.3:c.1456G>A	p.Glu486Lys	p.E486K	ENST00000394830	NM_018313.4	486	Gag/Aag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523745	176523745	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	41	481	0	ENST00000292408.4:c.2153+3G>C		p.X718_splice	ENST00000292408	NM_213647.1	718																																																																															
STAG2	10735	MSKCC	GRCh37	X	123199793	123199793	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	106	363	0	ENST00000218089.9:c.2093A>T	p.His698Leu	p.H698L	ENST00000218089	NM_001042749.1	698	cAt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	137	168	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	135	490	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435317	56435317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200066146		P-0016208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	81	327	0	ENST00000407977.2:c.1820C>T	p.Ser607Leu	p.S607L	ENST00000407977		607	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	616	610	1	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	25	491	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	599	604	0	ENST00000269305.4:c.811G>C	p.Glu271Gln	p.E271Q	ENST00000269305	NM_001126112.2	271	Gag/Cag																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	29	440	1	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	584	605	0	ENST00000269305.4:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000269305	NM_001126112.2	287	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579894	7579894	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	98	501	0	ENST00000269305.4:c.19G>C	p.Asp7His	p.D7H	ENST00000269305	NM_001126112.2	7	Gat/Cat																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044457	128044457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	79	455	0	ENST00000285398.2:c.1164G>C	p.Gln388His	p.Q388H	ENST00000285398	NM_000122.1	388	caG/caC																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40789994	40789994	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	69	318	0	ENST00000373198.4:c.2737G>A	p.Glu913Lys	p.E913K	ENST00000373198	NM_133170.3	913	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1264516	1264516	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0016208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	64	260	0	ENST00000310581.5:c.2843+3G>A		p.X948_splice	ENST00000310581	NM_198253.2	948																																																																															
TNFAIP3	7128	MSKCC	GRCh37	6	138192409	138192409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	65	235	0	ENST00000237289.4:c.45G>A	p.Met15Ile	p.M15I	ENST00000237289	NM_001270507.1	15	atG/atA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	264	628	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1612	37	670	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1396	138	635	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971325	15971325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	202	544	0	ENST00000268712.3:c.4624G>A	p.Val1542Met	p.V1542M	ENST00000268712	NM_006311.3	1542	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	110	395	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	190	570	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495023	56495023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2271188		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	206	586	0	ENST00000267101.3:c.3380G>A	p.Arg1127His	p.R1127H	ENST00000267101	NM_001982.3	1127	cGc/cAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	689	364	1	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	438	586	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	512	770	15	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	125	454	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1450	689	968	0	ENST00000269305.4:c.643A>T	p.Ser215Cys	p.S215C	ENST00000269305	NM_001126112.2	215	Agt/Tgt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	274	531	6	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	428	626	1	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
RB1	5925	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	398	644	2	ENST00000267163.4:c.1959delA	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	201	488	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	478	823	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	497	647	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	524	644	3	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1595	342	804	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	423	517	16	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	593	709	4	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288934	212288934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	239	575	2	ENST00000342788.4:c.2812C>T	p.Arg938Cys	p.R938C	ENST00000342788	NM_005235.2	938	Cgt/Tgt																																																																														
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	482	651	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148514998	148515000	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1291	280	636	0	ENST00000320356.2:c.1209_1211del	p.Glu404del	p.E404del	ENST00000320356	NM_004456.4	403	gaAGAg/gag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	696	611	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39937104	39937104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	611	725	2	ENST00000378444.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000378444	NM_001123385.1	27	Gaa/Aaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	344	655	2	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132927	64132927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145356210		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	169	628	0	ENST00000334205.4:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000334205	NM_003942.2	354	cGa/cAa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922238	39922238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	130	394	0	ENST00000378444.4:c.3934G>A	p.Ala1312Thr	p.A1312T	ENST00000378444	NM_001123385.1	1312	Gca/Aca																																																																														
AR	367	MSKCC	GRCh37	X	66765826	66765826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1786	432	1009	3	ENST00000374690.3:c.838C>T	p.Arg280Cys	p.R280C	ENST00000374690	NM_000044.3	280	Cgt/Tgt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100302	157100302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	275	455	0	ENST00000346085.5:c.1243delG	p.Ala415ProfsTer15	p.A415Pfs*15	ENST00000346085	NM_020732.3	413	tcG/tc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37045935	37045935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	1020	689	2	ENST00000231790.2:c.350C>T	p.Thr117Met	p.T117M	ENST00000231790	NM_000249.3	117	aCg/aTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396482	139396482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1633	148	728	1	ENST00000277541.6:c.5443del	p.Asp1815ThrfsTer72	p.D1815Tfs*72	ENST00000277541	NM_017617.3	1815	Gac/ac																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164781	36164781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1306	319	757	0	ENST00000300305.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000300305		365	gGc/gAc																																																																														
B2M	567	MSKCC	GRCh37	15	45003782	45003782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	236	449	0	ENST00000558401.1:c.38T>C	p.Leu13Pro	p.L13P	ENST00000558401	NM_004048.2	13	cTc/cCc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61726051	61726052	+	splice_region_variant,intron_variant	Splice_Region	DEL	AA	AA	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	536	665	2	ENST00000401558.2:c.591-4_591-3delTT		p.X197_splice	ENST00000401558	NM_003400.3	197																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	477	669	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1233	786	961	12	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1293	310	756	1	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	483	825	13	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1599	414	944	5	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9781599	9781599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1591	234	793	0	ENST00000377346.4:c.1909G>A	p.Ala637Thr	p.A637T	ENST00000377346	NM_005026.3	637	Gcc/Acc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937220	36937220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	527	737	1	ENST00000361632.4:c.1099C>T	p.Arg367Trp	p.R367W	ENST00000361632		367	Cgg/Tgg																																																																														
MPL	4352	MSKCC	GRCh37	1	43812216	43812216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1798	215	862	0	ENST00000372470.3:c.1081A>G	p.Ile361Val	p.I361V	ENST00000372470	NM_005373.2	361	Att/Gtt																																																																														
MPL	4352	MSKCC	GRCh37	1	43812531	43812531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1337	359	664	1	ENST00000372470.3:c.1234C>T	p.His412Tyr	p.H412Y	ENST00000372470	NM_005373.2	412	Cac/Tac																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733668	85733668	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	81	517	0	ENST00000370580.1:c.347-3T>A		p.X116_splice	ENST00000370580	NM_003921.4	116																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729588	162729588	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	356	545	0	ENST00000367921.3:c.674T>C	p.Met225Thr	p.M225T	ENST00000367921	NM_006182.2	225	aTg/aCg																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176153831	176153831	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	125	417	2	ENST00000367669.3:c.408-3del		p.X136_splice	ENST00000367669	NM_022457.5	136																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176175799	176175799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	272	586	0	ENST00000367669.3:c.316C>A	p.Leu106Ile	p.L106I	ENST00000367669	NM_022457.5	106	Cta/Ata																																																																														
CDC73	79577	MSKCC	GRCh37	1	193205393	193205393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	210	480	0	ENST00000367435.3:c.1324G>A	p.Val442Ile	p.V442I	ENST00000367435	NM_024529.4	442	Gtt/Att																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206646659	206646659	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1652	88	743	0	ENST00000367120.3:c.87+2T>C		p.X29_splice	ENST00000367120	NM_014002.3	29																																																																															
RET	5979	MSKCC	GRCh37	10	43609063	43609063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	524	729	0	ENST00000355710.3:c.1819G>T	p.Gly607Cys	p.G607C	ENST00000355710	NM_020975.4	607	Ggc/Tgc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67197056	67197056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1348	110	630	1	ENST00000312629.5:c.299T>A	p.Val100Asp	p.V100D	ENST00000312629	NM_003952.2	100	gTc/gAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404743	404743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	132	387	0	ENST00000399788.2:c.4451T>C	p.Met1484Thr	p.M1484T	ENST00000399788	NM_001042603.1	1484	aTg/aCg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211671	46211671	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	281	378	0	ENST00000334344.6:c.637A>G	p.Thr213Ala	p.T213A	ENST00000334344	NM_152641.2	213	Act/Gct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1248	184	571	2	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432462	49432462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1710	128	821	0	ENST00000301067.7:c.8677A>G	p.Thr2893Ala	p.T2893A	ENST00000301067	NM_003482.3	2893	Act/Gct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1325	388	695	3	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448480	49448480	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1240	356	653	0	ENST00000301067.7:c.231del	p.His77GlnfsTer53	p.H77Qfs*53	ENST00000301067	NM_003482.3	77	caC/ca																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856322	111856323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	46	131	0	ENST00000341259.2:c.377dup	p.Pro127AlafsTer45	p.P127Afs*45	ENST00000341259	NM_005475.2	125	gcc/gCcc																																																																														
RB1	5925	MSKCC	GRCh37	13	48937095	48937095	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	143	329	0	ENST00000267163.4:c.861+2T>C		p.X287_splice	ENST00000267163	NM_000321.2	287																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49281749	49281750	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1691	458	856	0	ENST00000282018.3:c.796_797del	p.Leu266GlufsTer19	p.L266Efs*19	ENST00000282018	NM_020377.2	266	CTg/g																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1876	429	1014	10	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830517	72830517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1527	120	661	0	ENST00000268489.5:c.6064T>C	p.Tyr2022His	p.Y2022H	ENST00000268489	NM_006885.3	2022	Tac/Cac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351595	89351595	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1519	646	848	0	ENST00000301030.4:c.1355del	p.Asn452IlefsTer3	p.N452Ifs*3	ENST00000301030	NM_001256183.1	452	aAt/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1416	77	701	0	ENST00000269305.4:c.994-2A>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15974932	15974932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	236	559	0	ENST00000268712.3:c.3943C>T	p.Pro1315Ser	p.P1315S	ENST00000268712	NM_006311.3	1315	Ccc/Tcc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682480	37682480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	476	627	1	ENST00000447079.4:c.3671C>T	p.Ala1224Val	p.A1224V	ENST00000447079	NM_015083.1	1224	gCa/gTa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40865396	40865396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1495	407	820	0	ENST00000428826.2:c.1035G>T	p.Lys345Asn	p.K345N	ENST00000428826		345	aaG/aaT																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78858829	78858829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1259	346	698	1	ENST00000306801.3:c.1864G>A	p.Ala622Thr	p.A622T	ENST00000306801	NM_020761.2	622	Gcc/Acc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395764	45395764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	450	533	0	ENST00000262160.6:c.370C>T	p.Pro124Ser	p.P124S	ENST00000262160	NM_005901.5	124	Cca/Tca																																																																														
MALT1	10892	MSKCC	GRCh37	18	56367783	56367783	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1291	122	630	0	ENST00000348428.3:c.609G>A	p.Trp203Ter	p.W203*	ENST00000348428	NM_006785.3	203	tgG/tgA																																																																														
STK11	6794	MSKCC	GRCh37	19	1226528	1226528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1317	645	866	1	ENST00000326873.7:c.1184C>T	p.Thr395Ile	p.T395I	ENST00000326873	NM_000455.4	395	aCa/aTa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622138	1622138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	259	575	0	ENST00000344749.5:c.737C>A	p.Pro246Gln	p.P246Q	ENST00000344749	NM_001136139.2	246	cCg/cAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244322	5244322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1908	137	880	0	ENST00000357368.4:c.1160A>G	p.Tyr387Cys	p.Y387C	ENST00000357368	NM_002850.3	387	tAc/tGc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1753	94	807	1	ENST00000171111.5:c.1249G>A	p.Gly417Arg	p.G417R	ENST00000171111	NM_203500.1	417	Ggg/Agg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271583	15271583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1535	806	1044	0	ENST00000263388.2:c.6856G>A	p.Ala2286Thr	p.A2286T	ENST00000263388	NM_000435.2	2286	Gca/Aca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276615	15276615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	515	651	2	ENST00000263388.2:c.5650G>A	p.Ala1884Thr	p.A1884T	ENST00000263388	NM_000435.2	1884	Gcc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216443	36216443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1932	248	891	0	ENST00000222270.7:c.3706C>T	p.Pro1236Ser	p.P1236S	ENST00000222270	NM_014727.1	1236	Ccc/Tcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218414	36218414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1393	115	650	0	ENST00000222270.7:c.4193A>G	p.Gln1398Arg	p.Q1398R	ENST00000222270	NM_014727.1	1398	cAg/cGg																																																																														
AKT2	208	MSKCC	GRCh37	19	40739798	40739798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1526	399	842	1	ENST00000392038.2:c.1427C>T	p.Ser476Leu	p.S476L	ENST00000392038	NM_001626.4	476	tCg/tTg																																																																														
AKT2	208	MSKCC	GRCh37	19	40741986	40741986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1382	355	808	0	ENST00000392038.2:c.986G>A	p.Arg329Gln	p.R329Q	ENST00000392038	NM_001626.4	329	cGg/cAg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52724307	52724307	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	484	675	0	ENST00000322088.6:c.1439C>G	p.Ala480Gly	p.A480G	ENST00000322088	NM_014225.5	480	gCc/gGc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086157	16086158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1441	151	699	0	ENST00000281043.3:c.1338dup	p.Leu447IlefsTer13	p.L447Ifs*13	ENST00000281043	NM_005378.4	445	gaa/gAaa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467088	25467088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1293	287	686	0	ENST00000264709.3:c.1787G>T	p.Arg596Leu	p.R596L	ENST00000264709	NM_175629.2	596	cGg/cTg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523088	25523088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	251	521	4	ENST00000264709.3:c.97C>T	p.Arg33Cys	p.R33C	ENST00000264709	NM_175629.2	33	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248630	212248631	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	108	554	0	ENST00000342788.4:c.3635_3636dup	p.Ala1213LeufsTer11	p.A1213Lfs*11	ENST00000342788	NM_005235.2	1212	-/TT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576842	212576842	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	120	666	0	ENST00000342788.4:c.1057A>G	p.Ile353Val	p.I353V	ENST00000342788	NM_005235.2	353	Att/Gtt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386409	31386409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1430	190	706	0	ENST00000328111.2:c.1634G>A	p.Arg545His	p.R545H	ENST00000328111	NM_006892.3	545	cGc/cAc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485116	57485116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	200	472	0	ENST00000371085.3:c.950G>A	p.Arg317His	p.R317H	ENST00000371085	NM_000516.4	317	cGc/cAc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026106	71026106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	131	502	0	ENST00000318789.4:c.1516G>A	p.Ala506Thr	p.A506T	ENST00000318789	NM_032682.5	506	Gcg/Acg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090497	71090497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	86	373	0	ENST00000318789.4:c.851A>G	p.His284Arg	p.H284R	ENST00000318789	NM_032682.5	284	cAc/cGc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1980581	1980581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	268	576	0	ENST00000382891.5:c.4043C>T	p.Pro1348Leu	p.P1348L	ENST00000382891	NM_133335.3	1348	cCg/cTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509119	66509119	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	168	712	0	ENST00000273854.3:c.208A>G	p.Met70Val	p.M70V	ENST00000273854	NM_004439.5	70	Atg/Gtg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081558	143081558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	409	574	1	ENST00000262992.4:c.1516G>T	p.Gly506Trp	p.G506W	ENST00000262992	NM_001101669.1	506	Ggg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510170	187510170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1303	98	512	0	ENST00000441802.2:c.13343T>C	p.Leu4448Pro	p.L4448P	ENST00000441802	NM_005245.3	4448	cTa/cCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518869	187518869	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1520	410	833	0	ENST00000441802.2:c.12335T>C	p.Val4112Ala	p.V4112A	ENST00000441802	NM_005245.3	4112	gTt/gCt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628739	187628739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1966	107	866	0	ENST00000441802.2:c.2243T>C	p.Phe748Ser	p.F748S	ENST00000441802	NM_005245.3	748	tTc/tCc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295233	1295233	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	211	420	1				ENST00000310581	NM_198253.2																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67591289	67591289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	211	517	0	ENST00000274335.5:c.1787A>G	p.Glu596Gly	p.E596G	ENST00000274335		596	gAg/gGg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131930737	131930737	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	323	435	0	ENST00000265335.6:c.1969+1G>A		p.X657_splice	ENST00000265335		657																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176524398	176524398	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1301	163	602	0	ENST00000292408.4:c.2259G>T	p.Glu753Asp	p.E753D	ENST00000292408	NM_213647.1	753	gaG/gaT																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046076	180046076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	234	514	0	ENST00000261937.6:c.2795A>G	p.Tyr932Cys	p.Y932C	ENST00000261937	NM_182925.4	932	tAc/tGc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	131	373	0	ENST00000412585.2:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163217	32163217	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	655	907	1	ENST00000375023.3:c.6009del	p.Lys2003AsnfsTer13	p.K2003Nfs*13	ENST00000375023	NM_004557.3	2003	aaA/aa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32164180	32164180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	131	409	0	ENST00000375023.3:c.5219G>T	p.Trp1740Leu	p.W1740L	ENST00000375023	NM_004557.3	1740	tGg/tTg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797187	32797187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1409	181	634	2	ENST00000374899.4:c.1922G>A	p.Cys641Tyr	p.C641Y	ENST00000374899	NM_018833.2	641	tGc/tAc																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683604	162683604	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	216	515	0	ENST00000366898.1:c.365T>G	p.Ile122Ser	p.I122S	ENST00000366898	NM_004562.2	122	aTt/aGt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958141	2958141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1290	256	692	1	ENST00000396946.4:c.2591C>T	p.Thr864Ile	p.T864I	ENST00000396946	NM_032415.4	864	aCc/aTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2977669	2977669	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1337	288	693	2	ENST00000396946.4:c.1018-3C>T		p.X340_splice	ENST00000396946	NM_032415.4	340																																																																															
CARD11	84433	MSKCC	GRCh37	7	2979478	2979478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1758	150	766	0	ENST00000396946.4:c.769A>G	p.Ile257Val	p.I257V	ENST00000396946	NM_032415.4	257	Att/Gtt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6042145	6042145	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	149	450	0	ENST00000265849.7:c.476T>C	p.Val159Ala	p.V159A	ENST00000265849	NM_000535.5	159	gTg/gCg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980471	70980471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1547	341	833	3	ENST00000276594.2:c.906G>A	p.Met302Ile	p.M302I	ENST00000276594	NM_024504.3	302	atG/atA																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069193	5069193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	391	745	0	ENST00000381652.3:c.1502delC	p.Pro501GlnfsTer10	p.P501Qfs*10	ENST00000381652	NM_004972.3	500	Ccc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	446	481	1	ENST00000304494.5:c.319C>T	p.Arg107Cys	p.R107C	ENST00000304494	NM_000077.4	107	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	446	481	1	ENST00000304494.5:c.319C>T	p.Arg107Cys	p.R107C	ENST00000304494	NM_000077.4	107	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971039	21971039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	446	481	1	ENST00000304494.5:c.319C>T	p.Arg107Cys	p.R107C	ENST00000304494	NM_000077.4	107	Cgc/Tgc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87563419	87563419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1327	352	747	0	ENST00000277120.3:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000277120		603	Cgt/Tgt																																																																														
SYK	6850	MSKCC	GRCh37	9	93626948	93626948	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	267	673	2	ENST00000375746.1:c.795G>T	p.Gln265His	p.Q265H	ENST00000375746	NM_001174167.1	265	caG/caT																																																																														
RXRA	6256	MSKCC	GRCh37	9	137293634	137293634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1468	682	949	2	ENST00000481739.1:c.185G>A	p.Gly62Asp	p.G62D	ENST00000481739	NM_002957.4	62	gGc/gAc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139802649	139802649	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	84	511	0	ENST00000247668.2:c.494A>G	p.His165Arg	p.H165R	ENST00000247668	NM_021138.3	165	cAt/cGt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923680	39923681	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1438	179	648	0	ENST00000378444.4:c.3410_3411del	p.Lys1137SerfsTer4	p.K1137Sfs*4	ENST00000378444	NM_001123385.1	1137	aAA/a																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652554	48652554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	326	434	0	ENST00000376670.3:c.1225G>A	p.Ala409Thr	p.A409T	ENST00000376670	NM_002049.3	409	Gct/Act																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225186	53225186	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1403	301	806	0	ENST00000375401.3:c.3032del	p.Asn1011ThrfsTer44	p.N1011Tfs*44	ENST00000375401	NM_004187.3	1011	aAc/ac																																																																														
MED12	9968	MSKCC	GRCh37	X	70339584	70339584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1675	140	825	0	ENST00000374080.3:c.253A>G	p.Thr85Ala	p.T85A	ENST00000374080		85	Acc/Gcc																																																																														
BTK	695	MSKCC	GRCh37	X	100608978	100608978	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1283	96	588	0	ENST00000308731.7:c.1632-2A>G		p.X544_splice	ENST00000308731	NM_000061.2	544																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089628	27089633	+	frameshift_variant	Frame_Shift_Ins	INS	TCCATG	TCCATG	GGCCTTATGA			P-0016314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1354	333	664	0	ENST00000324856.7:c.2584_2589delinsGGCCTTATGA	p.Ser862GlyfsTer11	p.S862Gfs*11	ENST00000324856	NM_006015.4	862	TCCATG/GGCCTTATGA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	37	509	1				ENST00000310581	NM_198253.2																																																																																
H3F3C	440093	MSKCC	GRCh37	12	31944812	31944812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	67	668	0	ENST00000340398.3:c.289G>A	p.Glu97Lys	p.E97K	ENST00000340398	NM_001013699.2	97	Gaa/Aaa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89345484	89345484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	26	307	0	ENST00000301030.4:c.7466C>T	p.Pro2489Leu	p.P2489L	ENST00000301030	NM_001256183.1	2489	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	58	525	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	58	525	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81381466	81381466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	79	431	1	ENST00000222390.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000222390	NM_000601.4	199	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923482	9923482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	50	703	0	ENST00000330684.3:c.1805G>A	p.Gly602Glu	p.G602E	ENST00000330684	NM_001134407.1	602	gGa/gAa																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	88	832	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956771	68956771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	74	739	0	ENST00000288368.4:c.889C>T	p.Arg297Cys	p.R297C	ENST00000288368	NM_024870.2	297	Cgt/Tgt																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154240	2154241	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	29	663	1	ENST00000434045.2:c.687_688delAGinsTA	p.Glu230Lys	p.E230K	ENST00000434045	NM_001127598.1	229	ccAGag/ccTAag																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200234	67200234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	65	711	0	ENST00000312629.5:c.542C>T	p.Ala181Val	p.A181V	ENST00000312629	NM_003952.2	181	gCc/gTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012477	29012477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	35	536	0	ENST00000282397.4:c.394G>A	p.Gly132Ser	p.G132S	ENST00000282397	NM_002019.4	132	Ggt/Agt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972298	32972298	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	48	476	0	ENST00000380152.3:c.9649-1G>A		p.X3217_splice	ENST00000380152		3217																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670460	88670460	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	59	427	0	ENST00000360948.2:c.1229-3C>T		p.X410_splice	ENST00000360948	NM_001012338.2	410																																																																															
STK11	6794	MSKCC	GRCh37	19	1221243	1221243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	79	804	3	ENST00000326873.7:c.766G>A	p.Glu256Lys	p.E256K	ENST00000326873	NM_000455.4	256	Gaa/Aaa																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257911	19257911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	59	840	1	ENST00000162023.5:c.475G>A	p.Glu159Lys	p.E159K	ENST00000162023		159	Gaa/Aaa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525066	9525066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	41	753	0	ENST00000353224.5:c.1819C>T	p.Pro607Ser	p.P607S	ENST00000353224	NM_177990.2	607	Ccc/Tcc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31368259	31368260	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	34	564	0	ENST00000328111.2:c.130_131delCCinsAT	p.Pro44Met	p.P44M	ENST00000328111	NM_006892.3	44	CCg/ATg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306547	41306547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	61	569	0	ENST00000373198.4:c.1112G>A	p.Gly371Glu	p.G371E	ENST00000373198	NM_133170.3	371	gGa/gAa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42852428	42852428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	52	629	0	ENST00000398585.3:c.658G>T	p.Ala220Ser	p.A220S	ENST00000398585	NM_001135099.1	220	Gcg/Tcg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12627284	12627284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	70	601	0	ENST00000251849.4:c.1432G>A	p.Glu478Lys	p.E478K	ENST00000251849	NM_002880.3	478	Gaa/Aaa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437181	52437182	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	49	652	1	ENST00000460680.1:c.1862_1863delCCinsTT	p.Pro621Leu	p.P621L	ENST00000460680	NM_004656.3	621	cCC/cTT																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427591	72427591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	49	272	0	ENST00000477973.2:c.897C>A	p.Ser300Tyr	p.S300Y	ENST00000477973	NM_012234.5	300	tCc/tAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259099	89259099	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	69	477	0	ENST00000336596.2:c.243G>C	p.Trp81Cys	p.W81C	ENST00000336596	NM_005233.5	81	tgG/tgC																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156585	55156585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	63	641	0	ENST00000257290.5:c.2986G>A	p.Glu996Lys	p.E996K	ENST00000257290	NM_006206.4	996	Gag/Aag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515277	31515277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	95	752	0	ENST00000344624.3:c.1108G>A	p.Asp370Asn	p.D370N	ENST00000344624		370	Gac/Aac																																																																														
NPM1	4869	MSKCC	GRCh37	5	170814963	170814963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	26	179	0	ENST00000296930.5:c.11C>T	p.Ser4Leu	p.S4L	ENST00000296930	NM_002520.6	4	tCg/tTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81350155	81350155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	61	490	1	ENST00000222390.5:c.1177C>T	p.Arg393Cys	p.R393C	ENST00000222390	NM_000601.4	393	Cgt/Tgt																																																																														
MET	4233	MSKCC	GRCh37	7	116339236	116339236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	92	516	1	ENST00000397752.3:c.98C>T	p.Ser33Phe	p.S33F	ENST00000397752	NM_000245.2	33	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417462	139417463	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0016347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	56	878	1	ENST00000277541.6:c.581_582delCCinsTT	p.Thr194Ile	p.T194I	ENST00000277541	NM_017617.3	194	aCC/aTT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0016351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	54	744	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	40	405	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0016351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	52	442	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0016351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	52	442	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0016351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	52	442	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	588	225	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0016418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	268	932	2	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	3852	809	3	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0016418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	291	595	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851517	63851517	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	468	751	2	ENST00000279873.7:c.2295G>C	p.Glu765Asp	p.E765D	ENST00000279873	NM_032199.2	765	gaG/gaC																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514284	69514284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	275	703	0	ENST00000294312.3:c.397G>A	p.Val133Met	p.V133M	ENST00000294312	NM_005117.2	133	Gtg/Atg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374069	118374069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	243	549	1	ENST00000534358.1:c.7462G>A	p.Asp2488Asn	p.D2488N	ENST00000534358	NM_005933.3	2488	Gat/Aat																																																																														
MAX	4149	MSKCC	GRCh37	14	65569033	65569033	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201743423		P-0016418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	304	556	2	ENST00000358664.4:c.25G>T	p.Val9Leu	p.V9L	ENST00000358664	NM_002382.4	9	Gtg/Ttg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56832405	56832405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	131	420	0	ENST00000308159.5:c.315G>C	p.Glu105Asp	p.E105D	ENST00000308159	NM_014669.4	105	gaG/gaC																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234590	41234590	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0016418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	143	503	0	ENST00000357654.3:c.4188G>C	p.Gln1396His	p.Q1396H	ENST00000357654	NM_007294.3	1396	caG/caC																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735408	204735408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	71	330	1	ENST00000302823.3:c.209G>A	p.Arg70Gln	p.R70Q	ENST00000302823	NM_005214.4	70	cGg/cAg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161362	55161362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	339	574	0	ENST00000257290.5:c.3193G>A	p.Glu1065Lys	p.E1065K	ENST00000257290	NM_006206.4	1065	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76845301	76845301	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	A			P-0016418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	159	291	0	ENST00000373344.5:c.6217+3G>T		p.X2073_splice	ENST00000373344	NM_000489.3	2073																																																																															
MDC1	9656	MSKCC	GRCh37	6	30673804	30673805	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0016453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	64	318	1	ENST00000376406.3:c.3155_3156delinsTA	p.Pro1052Leu	p.P1052L	ENST00000376406	NM_014641.2	1052	cCC/cTA																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964479	70964479	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	53	494	0	ENST00000276594.2:c.1549T>C	p.Phe517Leu	p.F517L	ENST00000276594	NM_024504.3	517	Ttc/Ctc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971210	21971210	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0016453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	44	346	0	ENST00000304494.5:c.151-3C>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971210	21971210	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0016453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	44	346	0	ENST00000304494.5:c.151-3C>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971210	21971210	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0016453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	44	346	0	ENST00000304494.5:c.151-3C>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602646	10602646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	119	472	0	ENST00000171111.5:c.932A>G	p.His311Arg	p.H311R	ENST00000171111	NM_203500.1	311	cAc/cGc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	113	488	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198268383	198268383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	104	497	0	ENST00000335508.6:c.1645C>T	p.Arg549Cys	p.R549C	ENST00000335508	NM_012433.2	549	Cgt/Tgt																																																																														
TET1	80312	MSKCC	GRCh37	10	70332105	70332105	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	30	161	0	ENST00000373644.4:c.10T>A	p.Ser4Thr	p.S4T	ENST00000373644	NM_030625.2	4	Tcc/Acc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600420	10600420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	189	669	0	ENST00000171111.5:c.1435G>A	p.Asp479Asn	p.D479N	ENST00000171111	NM_203500.1	479	Gac/Aac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	116	461	0	ENST00000373198.4:c.1238C>G	p.Ala413Gly	p.A413G	ENST00000373198	NM_133170.3	413	gCg/gGg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98232214	98232214	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	111	402	0	ENST00000331920.6:c.1729-1G>C		p.X577_splice	ENST00000331920	NM_000264.3	577																																																																															
RBM10	8241	MSKCC	GRCh37	X	47039815	47039815	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	126	731	0	ENST00000329236.7:c.927-3C>G		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040611	47040611	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0016471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	56	315	0	ENST00000329236.7:c.1015-3C>G		p.X339_splice	ENST00000329236	NM_001204466.1	339																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	122	336	0				ENST00000310581	NM_198253.2																																																																																
TSC1	7248	MSKCC	GRCh37	9	135801105	135801105	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	95	380	0	ENST00000298552.3:c.232G>T	p.Glu78Ter	p.E78*	ENST00000298552	NM_001162426.1	78	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023449	27023449	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	115	475	0	ENST00000324856.7:c.555G>C	p.Gln185His	p.Q185H	ENST00000324856	NM_006015.4	185	caG/caC																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138201355	138201355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	89	497	0	ENST00000237289.4:c.2054G>A	p.Arg685Lys	p.R685K	ENST00000237289	NM_001270507.1	685	aGa/aAa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141449	11141449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	155	613	1	ENST00000344626.4:c.3426C>G	p.Phe1142Leu	p.F1142L	ENST00000344626	NM_003072.3	1142	ttC/ttG																																																																														
APC	324	MSKCC	GRCh37	5	112090657	112090657	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs145945630		P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	91	474	0	ENST00000257430.4:c.70C>T	p.Arg24Ter	p.R24*	ENST00000257430	NM_000038.5	24	Cga/Tga																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216899	7216899	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	126	399	0	ENST00000380728.2:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000380728		208	Cag/Tag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31495482	31495482	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	152	459	0	ENST00000344624.3:c.1669-3C>G		p.X557_splice	ENST00000344624		557																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27059260	27059260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	53	492	0	ENST00000324856.7:c.1897C>A	p.Gln633Lys	p.Q633K	ENST00000324856	NM_006015.4	633	Cag/Aag																																																																														
NUF2	83540	MSKCC	GRCh37	1	163298673	163298673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	113	654	0	ENST00000271452.3:c.313G>A	p.Glu105Lys	p.E105K	ENST00000271452	NM_145697.2	105	Gag/Aag																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195313	102195313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	96	456	1	ENST00000263464.3:c.73G>A	p.Asp25Asn	p.D25N	ENST00000263464	NM_001165.4	25	Gac/Aac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422915	49422915	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	119	468	0	ENST00000301067.7:c.14180C>G	p.Ser4727Ter	p.S4727*	ENST00000301067	NM_003482.3	4727	tCa/tGa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431898	49431898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	130	712	0	ENST00000301067.7:c.9241G>A	p.Glu3081Lys	p.E3081K	ENST00000301067	NM_003482.3	3081	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906637	32906637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	107	548	0	ENST00000380152.3:c.1022G>A	p.Cys341Tyr	p.C341Y	ENST00000380152		341	tGt/tAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914736	32914736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	154	643	0	ENST00000380152.3:c.6244G>A	p.Glu2082Lys	p.E2082K	ENST00000380152		2082	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914752	32914752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	162	648	0	ENST00000380152.3:c.6260G>C	p.Arg2087Thr	p.R2087T	ENST00000380152		2087	aGa/aCa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915015	32915015	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	180	626	0	ENST00000380152.3:c.6523G>C	p.Glu2175Gln	p.E2175Q	ENST00000380152		2175	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	145	523	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2211115	2211115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	150	582	1	ENST00000398665.3:c.1369C>T	p.His457Tyr	p.H457Y	ENST00000398665	NM_032482.2	457	Cac/Tac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212101	5212101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	142	549	0	ENST00000357368.4:c.4930G>A	p.Ala1644Thr	p.A1644T	ENST00000357368	NM_002850.3	1644	Gcc/Acc																																																																														
CALR	811	MSKCC	GRCh37	19	13051659	13051659	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	78	570	1	ENST00000316448.5:c.918T>A	p.Tyr306Ter	p.Y306*	ENST00000316448	NM_004343.3	306	taT/taA																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955076	17955076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	73	561	1	ENST00000458235.1:c.151G>A	p.Glu51Lys	p.E51K	ENST00000458235	NM_000215.3	51	Gag/Aag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30664690	30664690	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	98	412	0	ENST00000359013.4:c.95-1G>A		p.X32_splice	ENST00000359013	NM_001024847.2	32																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045714	26045714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	92	157	1	ENST00000540144.1:c.76G>A	p.Ala26Thr	p.A26T	ENST00000540144	NM_003531.2	26	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878464	151878464	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	130	600	0	ENST00000262189.6:c.6481C>T	p.Gln2161Ter	p.Q2161*	ENST00000262189	NM_170606.2	2161	Caa/Taa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69032434	69032434	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	79	597	0	ENST00000288368.4:c.3508G>C	p.Asp1170His	p.D1170H	ENST00000288368	NM_024870.2	1170	Gat/Cat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772880	135772880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	144	562	1	ENST00000298552.3:c.2743C>T	p.His915Tyr	p.H915Y	ENST00000298552	NM_001162426.1	915	Cac/Tac																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867516	35867516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	86	526	0	ENST00000303115.3:c.330G>T	p.Lys110Asn	p.K110N	ENST00000303115	NM_002185.3	110	aaG/aaT																																																																														
AXL	558	MSKCC	GRCh37	19	41743993	41743993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	194	758	1	ENST00000301178.4:c.928G>A	p.Ala310Thr	p.A310T	ENST00000301178	NM_021913.4	310	Gca/Aca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491483	18491483	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	66	413	0	ENST00000266497.5:c.1395+1G>C		p.X465_splice	ENST00000266497		465																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	116	547	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790793	89790793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	141	743	0	ENST00000336032.3:c.180C>A	p.Phe60Leu	p.F60L	ENST00000336032	NM_006813.2	60	ttC/ttA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509103	66509103	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	114	511	1	ENST00000273854.3:c.224G>A	p.Trp75Ter	p.W75*	ENST00000273854	NM_004439.5	75	tGg/tAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1293661	1293661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	146	633	2	ENST00000310581.5:c.1340G>A	p.Arg447His	p.R447H	ENST00000310581	NM_198253.2	447	cGc/cAc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178685	56178685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	49	173	0	ENST00000399503.3:c.3658C>T	p.Gln1220Ter	p.Q1220*	ENST00000399503	NM_005921.1	1220	Caa/Taa																																																																														
MPL	4352	MSKCC	GRCh37	1	43803818	43803818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147938568		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	139	549	0	ENST00000372470.3:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000372470	NM_005373.2	43	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47147533	47147533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	90	502	1	ENST00000409792.3:c.4793G>A	p.Arg1598Gln	p.R1598Q	ENST00000409792	NM_014159.6	1598	cGa/cAa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101909971	101909971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	60	241	0	ENST00000374994.4:c.1291C>A	p.Leu431Ile	p.L431I	ENST00000374994	NM_004612.2	431	Ctt/Att																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	136	643	4	ENST00000263967.3:c.1638G>T	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caT																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043386	180043386	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	127	571	0	ENST00000261937.6:c.3200A>T	p.Asp1067Val	p.D1067V	ENST00000261937	NM_182925.4	1067	gAc/gTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254749	16254749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	158	545	2	ENST00000375759.3:c.2014C>T	p.Arg672Ter	p.R672*	ENST00000375759	NM_015001.2	672	Cga/Tga																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	26	684	1	ENST00000171111.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000171111	NM_203500.1	470	Cgt/Tgt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395162	139395162	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199652954		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	110	587	0	ENST00000277541.6:c.5776C>T	p.Arg1926Cys	p.R1926C	ENST00000277541	NM_017617.3	1926	Cgc/Tgc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50921170	50921170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	129	645	2	ENST00000440232.2:c.3290G>A	p.Arg1097Gln	p.R1097Q	ENST00000440232	NM_002691.3	1097	cGg/cAg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729907	41729907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	108	493	0	ENST00000242208.4:c.622G>A	p.Glu208Lys	p.E208K	ENST00000242208	NM_002192.2	208	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81335719	81335719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	94	413	1	ENST00000222390.5:c.1641G>T	p.Trp547Cys	p.W547C	ENST00000222390	NM_000601.4	547	tgG/tgT																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852251	63852251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137983907		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	101	412	1	ENST00000279873.7:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000279873	NM_032199.2	1010	cGg/cAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467548	66467548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	75	341	0	ENST00000273854.3:c.721G>T	p.Ala241Ser	p.A241S	ENST00000273854	NM_004439.5	241	Gct/Tct																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513309	44513309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	186	700	0	ENST00000291552.4:c.626G>A	p.Arg209His	p.R209H	ENST00000291552	NM_006758.2	209	cGt/cAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356251	66356251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	128	500	1	ENST00000273854.3:c.1246C>T	p.Pro416Ser	p.P416S	ENST00000273854	NM_004439.5	416	Ccc/Tcc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332272	70332272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	48	538	0	ENST00000373644.4:c.177G>T	p.Lys59Asn	p.K59N	ENST00000373644	NM_030625.2	59	aaG/aaT																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969848	81969848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	149	612	0	ENST00000359376.3:c.2917G>A	p.Asp973Asn	p.D973N	ENST00000359376	NM_002661.3	973	Gac/Aac																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841178	15841178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	127	538	2	ENST00000307771.7:c.1262G>A	p.Arg421Gln	p.R421Q	ENST00000307771	NM_005089.3	421	cGa/cAa																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43745248	43745248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	113	616	0	ENST00000523873.1:c.161C>T	p.Pro54Leu	p.P54L	ENST00000523873		54	cCa/cTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710643	40710643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151076965		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	105	493	0	ENST00000373198.4:c.4208G>A	p.Arg1403His	p.R1403H	ENST00000373198	NM_133170.3	1403	cGt/cAt																																																																														
TET1	80312	MSKCC	GRCh37	10	70411602	70411602	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	84	495	1	ENST00000373644.4:c.4277-1G>T		p.X1426_splice	ENST00000373644	NM_030625.2	1426																																																																															
TET1	80312	MSKCC	GRCh37	10	70333864	70333864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	91	428	2	ENST00000373644.4:c.1769G>A	p.Arg590Gln	p.R590Q	ENST00000373644	NM_030625.2	590	cGa/cAa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946150	13946150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	142	599	0	ENST00000405192.2:c.946C>T	p.Gln316Ter	p.Q316*	ENST00000405192	NM_001163147.1	316	Cag/Tag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562336	21562336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	139	599	0	ENST00000382592.4:c.1583C>T	p.Ser528Leu	p.S528L	ENST00000382592	NM_014572.2	528	tCg/tTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412303	139412303	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	89	591	0	ENST00000277541.6:c.1342C>T	p.Arg448Ter	p.R448*	ENST00000277541	NM_017617.3	448	Cga/Tga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81973613	81973613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	119	659	0	ENST00000359376.3:c.3430G>A	p.Asp1144Asn	p.D1144N	ENST00000359376	NM_002661.3	1144	Gat/Aat																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178104	56178104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	72	376	0	ENST00000399503.3:c.3077C>A	p.Ser1026Tyr	p.S1026Y	ENST00000399503	NM_005921.1	1026	tCt/tAt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852488	63852488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	98	405	1	ENST00000279873.7:c.3266C>T	p.Ser1089Leu	p.S1089L	ENST00000279873	NM_032199.2	1089	tCg/tTg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728826	190728826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	99	420	0	ENST00000441310.2:c.2214G>T	p.Met738Ile	p.M738I	ENST00000441310	NM_000534.4	738	atG/atT																																																																														
ERG	2078	MSKCC	GRCh37	21	39772519	39772519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	103	425	0	ENST00000288319.7:c.722C>T	p.Thr241Met	p.T241M	ENST00000288319	NM_182918.3	241	aCg/aTg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38315007	38315007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	187	664	1	ENST00000425967.3:c.57G>T	p.Trp19Cys	p.W19C	ENST00000425967	NM_001174067.1	19	tgG/tgT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979201	93979201	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	60	278	0	ENST00000369303.4:c.1627T>G	p.Phe543Val	p.F543V	ENST00000369303	NM_004440.3	543	Ttt/Gtt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343506	343506	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141807086		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	100	613	1	ENST00000262320.3:c.2168G>A	p.Arg723Gln	p.R723Q	ENST00000262320	NM_003502.3	723	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521544	8521544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	102	339	0	ENST00000356435.5:c.694C>T	p.Arg232Cys	p.R232C	ENST00000356435		232	Cgc/Tgc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139818343	139818343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	161	612	0	ENST00000247668.2:c.1178G>A	p.Arg393His	p.R393H	ENST00000247668	NM_021138.3	393	cGt/cAt																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	109	479	1	ENST00000356142.4:c.85C>A	p.Pro29Thr	p.P29T	ENST00000356142	NM_018890.3	29	Cct/Act																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275649	41275649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	104	374	0	ENST00000349496.5:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000349496	NM_001904.3	515	cGa/cAa																																																																														
PARP1	142	MSKCC	GRCh37	1	226564924	226564924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	113	457	0	ENST00000366794.5:c.1826A>G	p.Asp609Gly	p.D609G	ENST00000366794	NM_001618.3	609	gAt/gGt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215356	5215356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	43	420	1	ENST00000357368.4:c.4262G>A	p.Arg1421His	p.R1421H	ENST00000357368	NM_002850.3	1421	cGc/cAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341142	8341142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	94	541	2	ENST00000356435.5:c.5074C>T	p.Arg1692Cys	p.R1692C	ENST00000356435		1692	Cgt/Tgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275291	41275291	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750554859		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	131	338	0	ENST00000349496.5:c.1457G>A	p.Arg486His	p.R486H	ENST00000349496	NM_001904.3	486	cGc/cAc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128201212	128201212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	105	594	0	ENST00000265960.3:c.1523G>A	p.Arg508His	p.R508H	ENST00000265960	NM_001006617.1	508	cGt/cAt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774133	66774133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	130	790	1	ENST00000307102.5:c.609G>T	p.Glu203Asp	p.E203D	ENST00000307102	NM_002755.3	203	gaG/gaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681073	117681073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	135	614	0	ENST00000368508.3:c.3547G>A	p.Val1183Ile	p.V1183I	ENST00000368508	NM_002944.2	1183	Gtt/Att																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874167	155874167	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	163	656	1	ENST00000368323.3:c.364C>T	p.Arg122Ter	p.R122*	ENST00000368323	NM_006912.5	122	Cga/Tga																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66518894	66518894	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	95	314	0	ENST00000358598.2:c.178-3C>T		p.X60_splice	ENST00000358598	NM_212471.2	60																																																																															
CDK4	1019	MSKCC	GRCh37	12	58143065	58143065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	139	622	0	ENST00000257904.6:c.719G>A	p.Arg240Gln	p.R240Q	ENST00000257904	NM_000075.3	240	cGa/cAa																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2489172	2489172	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	130	540	0	ENST00000355716.4:c.77A>T	p.Tyr26Phe	p.Y26F	ENST00000355716	NM_003820.2	26	tAt/tTt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777122	9777122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	165	810	1	ENST00000377346.4:c.886G>T	p.Val296Phe	p.V296F	ENST00000377346	NM_005026.3	296	Gtc/Ttc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784394	9784394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	187	738	1	ENST00000377346.4:c.2779C>A	p.Arg927Ser	p.R927S	ENST00000377346	NM_005026.3	927	Cgc/Agc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784442	9784442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	134	558	0	ENST00000377346.4:c.2827C>T	p.Gln943Ter	p.Q943*	ENST00000377346	NM_005026.3	943	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184646	11184646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	122	374	1	ENST00000361445.4:c.6571G>T	p.Asp2191Tyr	p.D2191Y	ENST00000361445	NM_004958.3	2191	Gat/Tat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11205060	11205060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	176	597	1	ENST00000361445.4:c.4729G>A	p.Ala1577Thr	p.A1577T	ENST00000361445	NM_004958.3	1577	Gcg/Acg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272940	11272940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	117	417	1	ENST00000361445.4:c.3311G>T	p.Gly1104Val	p.G1104V	ENST00000361445	NM_004958.3	1104	gGc/gTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16246014	16246014	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	74	241	0	ENST00000375759.3:c.1635+2T>C		p.X545_splice	ENST00000375759	NM_015001.2	545																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255263	16255263	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	163	563	0	ENST00000375759.3:c.2528A>T	p.Glu843Val	p.E843V	ENST00000375759	NM_015001.2	843	gAg/gTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259024	16259024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	124	461	0	ENST00000375759.3:c.6289G>T	p.Asp2097Tyr	p.D2097Y	ENST00000375759	NM_015001.2	2097	Gat/Tat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259489	16259489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	72	420	0	ENST00000375759.3:c.6754G>T	p.Gly2252Cys	p.G2252C	ENST00000375759	NM_015001.2	2252	Ggt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260789	16260789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	104	392	0	ENST00000375759.3:c.8054C>G	p.Thr2685Ser	p.T2685S	ENST00000375759	NM_015001.2	2685	aCc/aGc																																																																														
CDC42	998	MSKCC	GRCh37	1	22405042	22405042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	88	271	0	ENST00000344548.3:c.71C>A	p.Thr24Lys	p.T24K	ENST00000344548	NM_001039802.1	24	aCa/aAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106104	27106104	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	125	485	0	ENST00000324856.7:c.5715A>T	p.Lys1905Asn	p.K1905N	ENST00000324856	NM_006015.4	1905	aaA/aaT																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366705	40366705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	85	344	0	ENST00000397332.2:c.492C>A	p.Ser164Arg	p.S164R	ENST00000397332	NM_001033082.2	164	agC/agA																																																																														
JUN	3725	MSKCC	GRCh37	1	59248046	59248046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	60	293	0	ENST00000371222.2:c.697C>T	p.Pro233Ser	p.P233S	ENST00000371222	NM_002228.3	233	Ccc/Tcc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65300330	65300330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	80	308	0	ENST00000342505.4:c.3380T>G	p.Leu1127Arg	p.L1127R	ENST00000342505	NM_002227.2	1127	cTt/cGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65309869	65309869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	78	425	1	ENST00000342505.4:c.2281C>A	p.Pro761Thr	p.P761T	ENST00000342505	NM_002227.2	761	Cct/Act																																																																														
JAK1	3716	MSKCC	GRCh37	1	65335069	65335069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	64	413	1	ENST00000342505.4:c.572G>A	p.Gly191Glu	p.G191E	ENST00000342505	NM_002227.2	191	gGg/gAg																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117690338	117690338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	116	393	0	ENST00000369458.3:c.791C>T	p.Ser264Phe	p.S264F	ENST00000369458	NM_024626.3	264	tCt/tTt																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165686	118165686	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	79	248	0	ENST00000369448.3:c.196G>C	p.Val66Leu	p.V66L	ENST00000369448	NM_017709.3	66	Gtg/Ctg																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166428	118166428	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	70	334	0	ENST00000369448.3:c.938T>C	p.Val313Ala	p.V313A	ENST00000369448	NM_017709.3	313	gTg/gCg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462857	120462857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	43	178	0	ENST00000256646.2:c.5474G>A	p.Gly1825Asp	p.G1825D	ENST00000256646	NM_024408.3	1825	gGc/gAc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193181198	193181198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	87	382	1	ENST00000367435.3:c.1034C>T	p.Ser345Phe	p.S345F	ENST00000367435	NM_024529.4	345	tCt/tTt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982429	201982429	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	168	583	0	ENST00000359651.3:c.805+3G>T		p.X269_splice	ENST00000359651		269																																																																															
RET	5979	MSKCC	GRCh37	10	43609087	43609087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	121	711	1	ENST00000355710.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000355710	NM_020975.4	615	Gag/Aag																																																																														
RET	5979	MSKCC	GRCh37	10	43609106	43609106	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	107	747	0	ENST00000355710.3:c.1862A>C	p.Glu621Ala	p.E621A	ENST00000355710	NM_020975.4	621	gAg/gCg																																																																														
TET1	80312	MSKCC	GRCh37	10	70446129	70446129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	60	412	2	ENST00000373644.4:c.5069G>A	p.Arg1690Gln	p.R1690Q	ENST00000373644	NM_030625.2	1690	cGa/cAa																																																																														
TET1	80312	MSKCC	GRCh37	10	70451141	70451141	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	123	558	0	ENST00000373644.4:c.5981G>A	p.Trp1994Ter	p.W1994*	ENST00000373644	NM_030625.2	1994	tGg/tAg																																																																														
TET1	80312	MSKCC	GRCh37	10	70451516	70451516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	174	618	1	ENST00000373644.4:c.6356C>T	p.Thr2119Ile	p.T2119I	ENST00000373644	NM_030625.2	2119	aCc/aTc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672125	88672125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	136	584	0	ENST00000372037.3:c.659C>A	p.Ser220Tyr	p.S220Y	ENST00000372037	NM_004329.2	220	tCt/tAt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681276	88681276	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	115	435	0	ENST00000372037.3:c.1167-1G>C		p.X389_splice	ENST00000372037	NM_004329.2	389																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720839	89720839	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	136	436	0	ENST00000371953.3:c.990A>T	p.Lys330Asn	p.K330N	ENST00000371953	NM_000314.4	330	aaA/aaT																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575511	64575511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	123	545	1	ENST00000337652.1:c.521G>C	p.Gly174Ala	p.G174A	ENST00000337652	NM_130803.2	174	gGt/gCt																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589750	69589750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	26	79	0	ENST00000168712.1:c.103C>G	p.Pro35Ala	p.P35A	ENST00000168712	NM_002007.2	35	Ccc/Gcc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943958	71943958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	151	697	0	ENST00000298229.2:c.1891C>T	p.Leu631Phe	p.L631F	ENST00000298229	NM_001567.3	631	Ctc/Ttc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943962	71943962	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	153	688	1	ENST00000298229.2:c.1895T>A	p.Leu632His	p.L632H	ENST00000298229	NM_001567.3	632	cTc/cAc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77091039	77091039	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	74	303	0	ENST00000356341.3:c.191C>G	p.Thr64Arg	p.T64R	ENST00000356341	NM_002576.4	64	aCa/aGa																																																																														
EED	8726	MSKCC	GRCh37	11	85989443	85989443	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	57	300	0	ENST00000263360.6:c.1202G>T	p.Cys401Phe	p.C401F	ENST00000263360	NM_003797.3	401	tGt/tTt																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94204874	94204874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	78	393	2	ENST00000323929.3:c.711C>A	p.Phe237Leu	p.F237L	ENST00000323929	NM_005591.3	237	ttC/ttA																																																																														
PGR	5241	MSKCC	GRCh37	11	100998456	100998456	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	83	423	0	ENST00000325455.5:c.1346C>A	p.Ser449Ter	p.S449*	ENST00000325455	NM_001202474.3	449	tCg/tAg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998903	100998903	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	92	543	0	ENST00000325455.5:c.899T>A	p.Val300Glu	p.V300E	ENST00000325455	NM_001202474.3	300	gTg/gAg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102206781	102206781	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	142	556	0	ENST00000263464.3:c.1409C>G	p.Thr470Ser	p.T470S	ENST00000263464	NM_001165.4	470	aCt/aGt																																																																														
ATM	472	MSKCC	GRCh37	11	108114793	108114793	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147915571		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	137	556	1	ENST00000278616.4:c.610G>A	p.Gly204Arg	p.G204R	ENST00000278616	NM_000051.3	204	Gga/Aga																																																																														
ATM	472	MSKCC	GRCh37	11	108192126	108192126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	117	517	2	ENST00000278616.4:c.6551G>A	p.Ser2184Asn	p.S2184N	ENST00000278616	NM_000051.3	2184	aGc/aAc																																																																														
ATM	472	MSKCC	GRCh37	11	108203625	108203625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	39	180	0	ENST00000278616.4:c.7925G>A	p.Arg2642Lys	p.R2642K	ENST00000278616	NM_000051.3	2642	aGa/aAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307396	118307396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	13	25	0	ENST00000534358.1:c.169C>T	p.Pro57Ser	p.P57S	ENST00000534358	NM_005933.3	57	Ccc/Tcc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352612	118352612	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	144	567	0	ENST00000534358.1:c.3817G>T	p.Glu1273Ter	p.E1273*	ENST00000534358	NM_005933.3	1273	Gaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373119	118373119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	80	287	0	ENST00000534358.1:c.6512C>A	p.Pro2171His	p.P2171H	ENST00000534358	NM_005933.3	2171	cCt/cAt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402193	402193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	182	675	1	ENST00000399788.2:c.4598C>A	p.Pro1533His	p.P1533H	ENST00000399788	NM_001042603.1	1533	cCt/cAt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	406356	406356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	139	561	0	ENST00000399788.2:c.4085G>C	p.Ser1362Thr	p.S1362T	ENST00000399788	NM_001042603.1	1362	aGt/aCt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	442721	442721	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	125	531	1	ENST00000399788.2:c.1585C>T	p.Gln529Ter	p.Q529*	ENST00000399788	NM_001042603.1	529	Cag/Tag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	459888	459888	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	183	797	0	ENST00000399788.2:c.1207G>C	p.Glu403Gln	p.E403Q	ENST00000399788	NM_001042603.1	403	Gaa/Caa																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870962	12870962	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	75	299	0	ENST00000228872.4:c.189T>A	p.Asp63Glu	p.D63E	ENST00000228872	NM_004064.3	63	gaT/gaA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18439787	18439787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	75	373	0	ENST00000266497.5:c.685G>T	p.Gly229Cys	p.G229C	ENST00000266497		229	Ggt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18478024	18478024	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	144	636	0	ENST00000266497.5:c.1264A>T	p.Lys422Ter	p.K422*	ENST00000266497		422	Aaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800935	18800935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	70	481	0	ENST00000266497.5:c.4311G>C	p.Trp1437Cys	p.W1437C	ENST00000266497		1437	tgG/tgC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424212	49424212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	45	149	0	ENST00000301067.7:c.13850G>T	p.Ser4617Ile	p.S4617I	ENST00000301067	NM_003482.3	4617	aGt/aTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431434	49431434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	139	568	0	ENST00000301067.7:c.9705G>T	p.Lys3235Asn	p.K3235N	ENST00000301067	NM_003482.3	3235	aaG/aaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433051	49433051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	133	535	0	ENST00000301067.7:c.8320C>T	p.Arg2774Trp	p.R2774W	ENST00000301067	NM_003482.3	2774	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437498	49437498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	94	513	0	ENST00000301067.7:c.5387G>T	p.Arg1796Leu	p.R1796L	ENST00000301067	NM_003482.3	1796	cGg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444138	49444138	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	128	648	1	ENST00000301067.7:c.3233T>A	p.Val1078Asp	p.V1078D	ENST00000301067	NM_003482.3	1078	gTt/gAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56490901	56490901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	142	498	1	ENST00000267101.3:c.2347C>A	p.Leu783Met	p.L783M	ENST00000267101	NM_001982.3	783	Ctg/Atg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861928	57861928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	105	412	0	ENST00000228682.2:c.1229C>A	p.Ser410Tyr	p.S410Y	ENST00000228682	NM_005269.2	410	tCt/tAt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112884105	112884105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	71	440	0	ENST00000351677.2:c.40G>A	p.Val14Met	p.V14M	ENST00000351677	NM_002834.3	14	Gtg/Atg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112611	115112611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	174	839	0	ENST00000257566.3:c.1129G>A	p.Ala377Thr	p.A377T	ENST00000257566	NM_016569.3	377	Gcc/Acc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112629	115112629	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	212	894	0	ENST00000257566.3:c.1111A>T	p.Ser371Cys	p.S371C	ENST00000257566	NM_016569.3	371	Agc/Tgc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120783963	120783963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	119	542	0	ENST00000257552.2:c.1022G>T	p.Ser341Ile	p.S341I	ENST00000257552	NM_002442.3	341	aGc/aTc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120783993	120783993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	108	636	0	ENST00000257552.2:c.992G>A	p.Ser331Asn	p.S331N	ENST00000257552	NM_002442.3	331	aGt/aAt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431456	121431456	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	122	550	0	ENST00000257555.6:c.660G>C	p.Arg220Ser	p.R220S	ENST00000257555		220	agG/agC																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432004	121432004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	132	691	0	ENST00000257555.6:c.751G>A	p.Ala251Thr	p.A251T	ENST00000257555		251	Gca/Aca																																																																														
POLE	5426	MSKCC	GRCh37	12	133249311	133249311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	165	676	0	ENST00000320574.5:c.1588G>T	p.Asp530Tyr	p.D530Y	ENST00000320574	NM_006231.2	530	Gac/Tac																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562946	21562946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	95	523	0	ENST00000382592.4:c.973G>C	p.Ala325Pro	p.A325P	ENST00000382592	NM_014572.2	325	Gcc/Ccc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21565438	21565438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	104	572	0	ENST00000382592.4:c.448G>C	p.Val150Leu	p.V150L	ENST00000382592	NM_014572.2	150	Gtg/Ctg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967644	26967644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	99	429	0	ENST00000381527.3:c.787G>A	p.Ala263Thr	p.A263T	ENST00000381527	NM_001260.1	263	Gca/Aca																																																																														
FLT1	2321	MSKCC	GRCh37	13	28886206	28886206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	98	560	0	ENST00000282397.4:c.3416G>T	p.Arg1139Ile	p.R1139I	ENST00000282397	NM_002019.4	1139	aGa/aTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32890607	32890607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	115	433	2	ENST00000380152.3:c.10G>T	p.Gly4Ter	p.G4*	ENST00000380152		4	Gga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906773	32906773	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	148	756	0	ENST00000380152.3:c.1158A>T	p.Glu386Asp	p.E386D	ENST00000380152		386	gaA/gaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911439	32911439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	86	494	1	ENST00000380152.3:c.2947C>A	p.Pro983Thr	p.P983T	ENST00000380152		983	Cca/Aca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911646	32911646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	85	451	1	ENST00000380152.3:c.3154G>A	p.Ala1052Thr	p.A1052T	ENST00000380152		1052	Gca/Aca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914347	32914347	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	99	442	0	ENST00000380152.3:c.5855T>A	p.Leu1952Ter	p.L1952*	ENST00000380152		1952	tTg/tAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929183	32929183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	175	703	0	ENST00000380152.3:c.7193C>A	p.Thr2398Asn	p.T2398N	ENST00000380152		2398	aCt/aAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32945215	32945215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	124	559	0	ENST00000380152.3:c.8610G>T	p.Gln2870His	p.Q2870H	ENST00000380152		2870	caG/caT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32971182	32971182	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	108	516	0	ENST00000380152.3:c.9648+1G>A		p.X3216_splice	ENST00000380152		3216																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134339	41134339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	66	304	0	ENST00000379561.5:c.1289G>T	p.Ser430Ile	p.S430I	ENST00000379561	NM_002015.3	430	aGc/aTc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134405	41134405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	79	370	0	ENST00000379561.5:c.1223C>T	p.Ala408Val	p.A408V	ENST00000379561	NM_002015.3	408	gCg/gTg																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281926	49281926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	147	649	0	ENST00000282018.3:c.973C>A	p.Pro325Thr	p.P325T	ENST00000282018	NM_020377.2	325	Cca/Aca																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514380	103514380	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	53	214	0	ENST00000355739.4:c.881G>C	p.Gly294Ala	p.G294A	ENST00000355739	NM_000123.3	294	gGt/gCt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514691	103514691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	91	356	0	ENST00000355739.4:c.1192G>T	p.Asp398Tyr	p.D398Y	ENST00000355739	NM_000123.3	398	Gac/Tac																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435622	110435622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	61	556	0	ENST00000375856.3:c.2779C>T	p.Pro927Ser	p.P927S	ENST00000375856	NM_003749.2	927	Ccc/Tcc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061185	38061185	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	84	307	1	ENST00000250448.2:c.804C>A	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tgC/tgA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061616	38061616	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	28	154	0	ENST00000250448.2:c.373A>T	p.Asn125Tyr	p.N125Y	ENST00000250448	NM_004496.3	125	Aat/Tat																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68352614	68352614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	111	420	0	ENST00000487270.1:c.481C>T	p.Pro161Ser	p.P161S	ENST00000487270	NM_133509.3	161	Ccc/Tcc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554299	81554299	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	134	582	0	ENST00000298171.2:c.319G>A	p.Glu107Lys	p.E107K	ENST00000298171	NM_000369.2	107	Gaa/Aaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81574766	81574766	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	123	463	0	ENST00000298171.2:c.662T>G	p.Phe221Cys	p.F221C	ENST00000298171	NM_000369.2	221	tTt/tGt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571537	95571537	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	73	437	0	ENST00000343455.3:c.3140T>G	p.Leu1047Arg	p.L1047R	ENST00000343455	NM_177438.2	1047	cTg/cGg																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675119	40675119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	135	721	1	ENST00000249776.8:c.83C>A	p.Pro28Gln	p.P28Q	ENST00000249776	NM_033286.3	28	cCg/cAg																																																																														
RAD51	5888	MSKCC	GRCh37	15	40993383	40993383	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	83	369	0	ENST00000267868.3:c.209A>T	p.Lys70Ile	p.K70I	ENST00000267868	NM_002875.4	70	aAa/aTa																																																																														
MGA	23269	MSKCC	GRCh37	15	41962157	41962157	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	43	250	0	ENST00000219905.7:c.1064+1G>C		p.X355_splice	ENST00000219905	NM_001164273.1	355																																																																															
MGA	23269	MSKCC	GRCh37	15	42005557	42005557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	119	547	0	ENST00000219905.7:c.3293A>G	p.His1098Arg	p.H1098R	ENST00000219905	NM_001164273.1	1098	cAt/cGt																																																																														
MGA	23269	MSKCC	GRCh37	15	42034999	42034999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	143	557	0	ENST00000219905.7:c.4841C>A	p.Pro1614His	p.P1614H	ENST00000219905	NM_001164273.1	1614	cCt/cAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42042175	42042175	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	143	682	1	ENST00000219905.7:c.6370G>T	p.Glu2124Ter	p.E2124*	ENST00000219905	NM_001164273.1	2124	Gaa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	42057152	42057152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	178	616	1	ENST00000219905.7:c.7813C>A	p.Leu2605Ile	p.L2605I	ENST00000219905	NM_001164273.1	2605	Ctc/Atc																																																																														
MGA	23269	MSKCC	GRCh37	15	42058491	42058491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	73	473	0	ENST00000219905.7:c.8211G>T	p.Gln2737His	p.Q2737H	ENST00000219905	NM_001164273.1	2737	caG/caT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713327	43713327	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs199673175		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	198	880	0	ENST00000382044.4:c.4146G>T	p.Glu1382Asp	p.E1382D	ENST00000382044	NM_001141980.1	1382	gaG/gaT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43784526	43784526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	174	534	2	ENST00000382044.4:c.148C>T	p.Arg50Ter	p.R50*	ENST00000382044	NM_001141980.1	50	Cga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45007758	45007758	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	76	340	0	ENST00000558401.1:c.205G>C	p.Val69Leu	p.V69L	ENST00000558401	NM_004048.2	69	Gtg/Ctg																																																																														
CD276	80381	MSKCC	GRCh37	15	73996138	73996138	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	172	750	0	ENST00000318443.5:c.872A>C	p.Lys291Thr	p.K291T	ENST00000318443	NM_001024736.1	291	aAa/aCa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670449	88670449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	58	370	0	ENST00000360948.2:c.1237G>A	p.Val413Met	p.V413M	ENST00000360948	NM_001012338.2	413	Gtg/Atg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680726	88680726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	110	504	0	ENST00000360948.2:c.531G>T	p.Gln177His	p.Q177H	ENST00000360948	NM_001012338.2	177	caG/caT																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88727456	88727456	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	65	384	0	ENST00000360948.2:c.323T>G	p.Leu108Arg	p.L108R	ENST00000360948	NM_001012338.2	108	cTg/cGg																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631917	90631917	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	146	639	0	ENST00000330062.3:c.436A>T	p.Thr146Ser	p.T146S	ENST00000330062	NM_002168.2	146	Act/Tct																																																																														
BLM	641	MSKCC	GRCh37	15	91303937	91303937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	122	553	1	ENST00000355112.3:c.1334C>T	p.Pro445Leu	p.P445L	ENST00000355112	NM_000057.2	445	cCt/cTt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99482590	99482590	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	106	343	0	ENST00000268035.6:c.3457+1G>T		p.X1153_splice	ENST00000268035	NM_000875.3	1153																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99491892	99491892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	124	536	0	ENST00000268035.6:c.3677T>C	p.Met1226Thr	p.M1226T	ENST00000268035	NM_000875.3	1226	aTg/aCg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396746	396746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	99	442	2	ENST00000262320.3:c.280G>A	p.Asp94Asn	p.D94N	ENST00000262320	NM_003502.3	94	Gat/Aat																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112592	2112592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	76	496	0	ENST00000219476.3:c.1352G>T	p.Arg451Ile	p.R451I	ENST00000219476	NM_000548.3	451	aGa/aTa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633323	3633323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	144	682	0	ENST00000294008.3:c.4928C>T	p.Ala1643Val	p.A1643V	ENST00000294008	NM_032444.2	1643	gCc/gTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3650995	3650995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	89	277	1	ENST00000294008.3:c.1148G>A	p.Ser383Asn	p.S383N	ENST00000294008	NM_032444.2	383	aGc/aAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786170	3786170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	148	620	0	ENST00000262367.5:c.4595C>T	p.Thr1532Ile	p.T1532I	ENST00000262367	NM_004380.2	1532	aCc/aTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858514	9858514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	78	470	0	ENST00000330684.3:c.2887C>T	p.Leu963Phe	p.L963F	ENST00000330684	NM_001134407.1	963	Ctc/Ttc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892199	9892199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	114	617	0	ENST00000330684.3:c.2291C>T	p.Ala764Val	p.A764V	ENST00000330684	NM_001134407.1	764	gCc/gTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916271	9916271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	71	370	0	ENST00000330684.3:c.2018C>A	p.Pro673His	p.P673H	ENST00000330684	NM_001134407.1	673	cCt/cAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943740	9943740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	119	439	1	ENST00000330684.3:c.1201C>T	p.Pro401Ser	p.P401S	ENST00000330684	NM_001134407.1	401	Ccg/Tcg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14026061	14026061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	59	290	1	ENST00000311895.7:c.1021G>T	p.Ala341Ser	p.A341S	ENST00000311895	NM_005236.2	341	Gca/Tca																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641476	23641476	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	136	693	2	ENST00000261584.4:c.1999G>T	p.Glu667Ter	p.E667*	ENST00000261584	NM_024675.3	667	Gaa/Taa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868166	56868166	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	95	499	0	ENST00000308159.5:c.1664G>T	p.Arg555Met	p.R555M	ENST00000308159	NM_014669.4	555	aGg/aTg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671731	67671731	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	119	388	1	ENST00000264010.4:c.2140G>T	p.Gly714Ter	p.G714*	ENST00000264010	NM_006565.3	714	Gga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822584	72822584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	71	280	1	ENST00000268489.5:c.9591G>T	p.Gln3197His	p.Q3197H	ENST00000268489	NM_006885.3	3197	caG/caT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827462	72827462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143909254		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	137	585	0	ENST00000268489.5:c.9119G>A	p.Arg3040His	p.R3040H	ENST00000268489	NM_006885.3	3040	cGt/cAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828360	72828360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	102	388	0	ENST00000268489.5:c.8221G>C	p.Ala2741Pro	p.A2741P	ENST00000268489	NM_006885.3	2741	Gct/Cct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828736	72828736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	69	399	1	ENST00000268489.5:c.7845G>T	p.Lys2615Asn	p.K2615N	ENST00000268489	NM_006885.3	2615	aaG/aaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829368	72829368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201280219		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	83	330	0	ENST00000268489.5:c.7213G>A	p.Ala2405Thr	p.A2405T	ENST00000268489	NM_006885.3	2405	Gct/Act																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81891936	81891936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	149	545	0	ENST00000359376.3:c.406G>T	p.Ala136Ser	p.A136S	ENST00000359376	NM_002661.3	136	Gcg/Tcg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944200	81944200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	158	704	0	ENST00000359376.3:c.1809C>G	p.Asp603Glu	p.D603E	ENST00000359376	NM_002661.3	603	gaC/gaG																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944297	81944297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	110	456	0	ENST00000359376.3:c.1906C>A	p.Pro636Thr	p.P636T	ENST00000359376	NM_002661.3	636	Ccc/Acc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944315	81944315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	91	419	0	ENST00000359376.3:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000359376	NM_002661.3	642	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81979795	81979795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	44	336	0	ENST00000359376.3:c.3497C>A	p.Pro1166His	p.P1166H	ENST00000359376	NM_002661.3	1166	cCt/cAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89337240	89337240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	123	489	0	ENST00000301030.4:c.7791G>T	p.Lys2597Asn	p.K2597N	ENST00000301030	NM_001256183.1	2597	aaG/aaT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346909	89346909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	12	110	1	ENST00000301030.4:c.6041C>T	p.Pro2014Leu	p.P2014L	ENST00000301030	NM_001256183.1	2014	cCg/cTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349424	89349424	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	174	708	1	ENST00000301030.4:c.3526C>T	p.Gln1176Ter	p.Q1176*	ENST00000301030	NM_001256183.1	1176	Cag/Tag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89811473	89811473	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	126	502	2	ENST00000389301.3:c.3520T>C	p.Trp1174Arg	p.W1174R	ENST00000389301	NM_000135.2	1174	Tgg/Cgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579360	7579360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	174	603	0	ENST00000269305.4:c.327C>A	p.Phe109Leu	p.F109L	ENST00000269305	NM_001126112.2	109	ttC/ttA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968237	15968237	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	81	291	0	ENST00000268712.3:c.5048G>C	p.Gly1683Ala	p.G1683A	ENST00000268712	NM_006311.3	1683	gGt/gCt																																																																														
NF1	4763	MSKCC	GRCh37	17	29509630	29509630	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	95	618	0	ENST00000358273.4:c.835G>T	p.Glu279Ter	p.E279*	ENST00000358273	NM_001042492.2	279	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29562745	29562745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	116	449	1	ENST00000358273.4:c.3825C>A	p.Phe1275Leu	p.F1275L	ENST00000358273	NM_001042492.2	1275	ttC/ttA																																																																														
NF1	4763	MSKCC	GRCh37	17	29670036	29670036	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	61	343	0	ENST00000358273.4:c.7072G>T	p.Glu2358Ter	p.E2358*	ENST00000358273	NM_001042492.2	2358	Gaa/Taa																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33446622	33446622	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	82	422	0	ENST00000335858.7:c.11T>A	p.Leu4His	p.L4H	ENST00000335858	NM_133629.2	4	cTc/cAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627445	37627445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	193	714	0	ENST00000447079.4:c.1360G>A	p.Glu454Lys	p.E454K	ENST00000447079	NM_015083.1	454	Gaa/Aaa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682543	37682543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	102	436	0	ENST00000447079.4:c.3734C>A	p.Pro1245His	p.P1245H	ENST00000447079	NM_015083.1	1245	cCc/cAc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40874858	40874858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	180	708	2	ENST00000428826.2:c.442G>A	p.Glu148Lys	p.E148K	ENST00000428826		148	Gag/Aag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243890	41243890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	146	571	0	ENST00000357654.3:c.3658G>A	p.Asp1220Asn	p.D1220N	ENST00000357654	NM_007294.3	1220	Gat/Aat																																																																														
MSI2	124540	MSKCC	GRCh37	17	55478811	55478811	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	135	474	1	ENST00000284073.2:c.384A>T	p.Gln128His	p.Q128H	ENST00000284073	NM_138962.2	128	caA/caT																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438259	56438259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	94	421	1	ENST00000407977.2:c.734C>A	p.Thr245Asn	p.T245N	ENST00000407977		245	aCc/aAc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58678227	58678227	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	127	638	0	ENST00000305921.3:c.452T>A	p.Leu151His	p.L151H	ENST00000305921	NM_003620.3	151	cTt/cAt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58734029	58734029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	142	439	0	ENST00000305921.3:c.1087C>A	p.Leu363Ile	p.L363I	ENST00000305921	NM_003620.3	363	Ctc/Atc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761044	59761044	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	64	475	0	ENST00000259008.2:c.3363T>A	p.Phe1121Leu	p.F1121L	ENST00000259008	NM_032043.2	1121	ttT/ttA																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763377	59763377	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	126	628	0	ENST00000259008.2:c.2725C>G	p.Leu909Val	p.L909V	ENST00000259008	NM_032043.2	909	Ctt/Gtt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59820420	59820420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	115	520	0	ENST00000259008.2:c.2333C>T	p.Ala778Val	p.A778V	ENST00000259008	NM_032043.2	778	gCt/gTt																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526498	66526498	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	115	398	0	ENST00000358598.2:c.1054C>T	p.Arg352Ter	p.R352*	ENST00000358598	NM_212471.2	352	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117794	70117794	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	84	505	0	ENST00000245479.2:c.262C>G	p.Leu88Val	p.L88V	ENST00000245479	NM_000346.3	88	Ctg/Gtg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78867515	78867515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	100	379	0	ENST00000306801.3:c.2251G>A	p.Ala751Thr	p.A751T	ENST00000306801	NM_020761.2	751	Gcg/Acg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896542	78896542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	187	807	1	ENST00000306801.3:c.2539C>T	p.Pro847Ser	p.P847S	ENST00000306801	NM_020761.2	847	Ccg/Tcg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372100	45372100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	144	645	0	ENST00000262160.6:c.1069G>C	p.Val357Leu	p.V357L	ENST00000262160	NM_005901.5	357	Gtg/Ctg																																																																														
STK11	6794	MSKCC	GRCh37	19	1206962	1206962	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	80	383	0	ENST00000326873.7:c.50T>G	p.Leu17Arg	p.L17R	ENST00000326873	NM_000455.4	17	cTg/cGg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619151	1619151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	136	511	2	ENST00000344749.5:c.1409G>A	p.Gly470Asp	p.G470D	ENST00000344749	NM_001136139.2	470	gGc/gAc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619835	1619835	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	135	625	1	ENST00000344749.5:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000344749	NM_001136139.2	371	Cga/Tga																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2185859	2185859	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	186	736	0	ENST00000398665.3:c.131T>A	p.Val44Asp	p.V44D	ENST00000398665	NM_032482.2	44	gTc/gAc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4123839	4123839	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	65	380	0	ENST00000262948.5:c.34C>G	p.Leu12Val	p.L12V	ENST00000262948	NM_030662.3	12	Ctc/Gtc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231329	5231329	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	83	383	0	ENST00000357368.4:c.2147A>C	p.Asp716Ala	p.D716A	ENST00000357368	NM_002850.3	716	gAc/gCc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274259	5274259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	165	693	0	ENST00000357368.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000357368	NM_002850.3	63	cGa/cAa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246927	10246927	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	119	403	0	ENST00000340748.4:c.4478A>T	p.Asn1493Ile	p.N1493I	ENST00000340748		1493	aAc/aTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097632	11097632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	142	714	1	ENST00000344626.4:c.812G>A	p.Gly271Glu	p.G271E	ENST00000344626	NM_003072.3	271	gGg/gAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11168930	11168930	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	50	355	0	ENST00000344626.4:c.4425-1G>A		p.X1475_splice	ENST00000344626	NM_003072.3	1475																																																																															
DNAJB1	3337	MSKCC	GRCh37	19	14627434	14627434	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	162	682	0	ENST00000254322.2:c.636G>A	p.Trp212Ter	p.W212*	ENST00000254322	NM_006145.1	212	tgG/tgA																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272332	15272332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	125	750	1	ENST00000263388.2:c.6107C>A	p.Pro2036His	p.P2036H	ENST00000263388	NM_000435.2	2036	cCc/cAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349208	15349208	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	119	515	1	ENST00000263377.2:c.4069T>A	p.Phe1357Ile	p.F1357I	ENST00000263377	NM_058243.2	1357	Ttt/Att																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366923	15366923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	173	778	1	ENST00000263377.2:c.1703C>A	p.Pro568His	p.P568H	ENST00000263377	NM_058243.2	568	cCt/cAt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18274188	18274188	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146112354		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	143	589	3	ENST00000222254.8:c.1406G>A	p.Arg469Gln	p.R469Q	ENST00000222254	NM_005027.3	469	cGg/cAg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18962977	18962977	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	162	754	0	ENST00000262803.5:c.844A>G	p.Lys282Glu	p.K282E	ENST00000262803	NM_002911.3	282	Aag/Gag																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256796	19256796	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	86	365	0	ENST00000162023.5:c.917C>G	p.Thr306Ser	p.T306S	ENST00000162023		306	aCc/aGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210973	36210973	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	180	886	3	ENST00000222270.7:c.724G>T	p.Glu242Ter	p.E242*	ENST00000222270	NM_014727.1	242	Gaa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211649	36211649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	56	365	0	ENST00000222270.7:c.1400G>A	p.Arg467Lys	p.R467K	ENST00000222270	NM_014727.1	467	aGg/aAg																																																																														
AXL	558	MSKCC	GRCh37	19	41727818	41727818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	201	777	2	ENST00000301178.4:c.443G>A	p.Arg148Lys	p.R148K	ENST00000301178	NM_021913.4	148	aGg/aAg																																																																														
AXL	558	MSKCC	GRCh37	19	41754692	41754692	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	140	564	0	ENST00000301178.4:c.1678T>G	p.Ser560Ala	p.S560A	ENST00000301178	NM_021913.4	560	Tcc/Gcc																																																																														
AXL	558	MSKCC	GRCh37	19	41758331	41758331	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	113	486	1	ENST00000301178.4:c.1787A>T	p.Asn596Ile	p.N596I	ENST00000301178	NM_021913.4	596	aAc/aTc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383133	42383133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	137	632	0	ENST00000221972.3:c.153C>G	p.His51Gln	p.H51Q	ENST00000221972	NM_021601.3	51	caC/caG																																																																														
CD79A	973	MSKCC	GRCh37	19	42383300	42383300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143511203		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	102	497	3	ENST00000221972.3:c.320G>A	p.Arg107Gln	p.R107Q	ENST00000221972	NM_021601.3	107	cGg/cAg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797748	42797748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	138	607	1	ENST00000575354.2:c.3800G>T	p.Ser1267Ile	p.S1267I	ENST00000575354	NM_015125.3	1267	aGc/aTc																																																																														
BBC3	27113	MSKCC	GRCh37	19	47731458	47731458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	27	60	0	ENST00000449228.1:c.334G>T	p.Ala112Ser	p.A112S	ENST00000449228	NM_001127240.2	112	Gcc/Tcc																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140169	50140169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	98	402	1	ENST00000246792.3:c.256G>A	p.Gly86Ser	p.G86S	ENST00000246792	NM_006270.3	86	Ggc/Agc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905479	50905479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	138	738	2	ENST00000440232.2:c.607G>A	p.Gly203Arg	p.G203R	ENST00000440232	NM_002691.3	203	Ggg/Agg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082244	16082244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	189	854	1	ENST00000281043.3:c.58G>A	p.Glu20Lys	p.E20K	ENST00000281043	NM_005378.4	20	Gag/Aag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464549	25464549	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	152	663	0	ENST00000264709.3:c.1964T>C	p.Ile655Thr	p.I655T	ENST00000264709	NM_175629.2	655	aTt/aCt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523007	25523007	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	129	476	0	ENST00000264709.3:c.177+1G>A		p.X59_splice	ENST00000264709	NM_175629.2	59																																																																															
CENPA	1058	MSKCC	GRCh37	2	27015094	27015094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	75	410	0	ENST00000335756.4:c.196C>T	p.Pro66Ser	p.P66S	ENST00000335756	NM_001809.3	66	Ccc/Tcc																																																																														
ALK	238	MSKCC	GRCh37	2	29416152	29416152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	95	422	0	ENST00000389048.3:c.4801G>A	p.Ala1601Thr	p.A1601T	ENST00000389048	NM_004304.4	1601	Gct/Act																																																																														
ALK	238	MSKCC	GRCh37	2	29420486	29420486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	145	452	0	ENST00000389048.3:c.3995G>A	p.Ser1332Asn	p.S1332N	ENST00000389048	NM_004304.4	1332	aGc/aAc																																																																														
ALK	238	MSKCC	GRCh37	2	29455251	29455251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	111	476	0	ENST00000389048.3:c.2551G>A	p.Ala851Thr	p.A851T	ENST00000389048	NM_004304.4	851	Gcc/Acc																																																																														
ALK	238	MSKCC	GRCh37	2	29497965	29497965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	70	337	0	ENST00000389048.3:c.2041G>T	p.Val681Phe	p.V681F	ENST00000389048	NM_004304.4	681	Gtt/Ttt																																																																														
ALK	238	MSKCC	GRCh37	2	30142930	30142930	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	158	742	0	ENST00000389048.3:c.596G>C	p.Gly199Ala	p.G199A	ENST00000389048	NM_004304.4	199	gGc/gCc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39240630	39240630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	119	493	1	ENST00000402219.2:c.2138G>A	p.Arg713Gln	p.R713Q	ENST00000402219	NM_005633.3	713	cGa/cAa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656901	47656901	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	80	292	0	ENST00000233146.2:c.1097T>G	p.Phe366Cys	p.F366C	ENST00000233146	NM_000251.2	366	tTt/tGt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702229	47702229	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	134	480	0	ENST00000233146.2:c.1825G>C	p.Ala609Pro	p.A609P	ENST00000233146	NM_000251.2	609	Gct/Cct																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026861	48026861	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	101	348	0	ENST00000234420.5:c.1739C>A	p.Ser580Ter	p.S580*	ENST00000234420	NM_000179.2	580	tCg/tAg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61724118	61724118	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	113	377	0	ENST00000401558.2:c.784A>C	p.Asn262His	p.N262H	ENST00000401558	NM_003400.3	262	Aat/Cat																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881495	111881495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	72	440	0	ENST00000393256.3:c.173G>T	p.Gly58Val	p.G58V	ENST00000393256	NM_006538.4	58	gGc/gTc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872599	136872599	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	82	319	0	ENST00000241393.3:c.899T>A	p.Ile300Asn	p.I300N	ENST00000241393	NM_003467.2	300	aTc/aAc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873334	136873334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	65	329	0	ENST00000241393.3:c.164G>A	p.Gly55Asp	p.G55D	ENST00000241393	NM_003467.2	55	gGc/gAc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096151	178096151	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	79	371	0	ENST00000397062.3:c.1180A>C	p.Lys394Gln	p.K394Q	ENST00000397062	NM_006164.4	394	Aaa/Caa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682785	190682785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	106	435	1	ENST00000441310.2:c.461T>C	p.Val154Ala	p.V154A	ENST00000441310	NM_000534.4	154	gTa/gCa																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735636	204735636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	64	318	0	ENST00000302823.3:c.437G>T	p.Gly146Val	p.G146V	ENST00000302823	NM_005214.4	146	gGa/gTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251784	212251784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	86	291	0	ENST00000342788.4:c.3275C>A	p.Pro1092His	p.P1092H	ENST00000342788	NM_005235.2	1092	cCt/cAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566709	212566709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	84	221	0	ENST00000342788.4:c.1472G>T	p.Arg491Ile	p.R491I	ENST00000342788	NM_005235.2	491	aGa/aTa																																																																														
BARD1	580	MSKCC	GRCh37	2	215609863	215609863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	143	451	0	ENST00000260947.4:c.1831G>A	p.Gly611Ser	p.G611S	ENST00000260947	NM_000465.2	611	Ggt/Agt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660640	227660640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	69	432	1	ENST00000305123.5:c.2815G>A	p.Glu939Lys	p.E939K	ENST00000305123	NM_005544.2	939	Gag/Aag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624877	9624877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	89	425	0	ENST00000353224.5:c.100G>T	p.Gly34Cys	p.G34C	ENST00000353224	NM_177990.2	34	Ggc/Tgc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375226	31375226	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	118	555	0	ENST00000328111.2:c.623A>T	p.Asp208Val	p.D208V	ENST00000328111	NM_006892.3	208	gAc/gTc																																																																														
SRC	6714	MSKCC	GRCh37	20	36022671	36022671	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	136	511	0	ENST00000358208.4:c.544A>T	p.Thr182Ser	p.T182S	ENST00000358208		182	Acc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713398	40713398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	119	489	0	ENST00000373198.4:c.4117C>G	p.Leu1373Val	p.L1373V	ENST00000373198	NM_133170.3	1373	Ctc/Gtc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735434	40735434	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	101	481	0	ENST00000373198.4:c.3439C>T	p.Gln1147Ter	p.Q1147*	ENST00000373198	NM_133170.3	1147	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40738976	40738976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	72	337	0	ENST00000373198.4:c.3308G>T	p.Cys1103Phe	p.C1103F	ENST00000373198	NM_133170.3	1103	tGc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739084	40739084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	88	500	0	ENST00000373198.4:c.3200C>G	p.Thr1067Ser	p.T1067S	ENST00000373198	NM_133170.3	1067	aCc/aGc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264725	46264725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	79	418	0	ENST00000371998.3:c.1595G>C	p.Gly532Ala	p.G532A	ENST00000371998		532	gGt/gCt																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321546	62321546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	134	584	0	ENST00000508582.2:c.2320C>A	p.Arg774Ser	p.R774S	ENST00000508582		774	Cgt/Agt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259140	36259140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	89	445	0	ENST00000300305.3:c.351G>T	p.Lys117Asn	p.K117N	ENST00000300305		117	aaG/aaT																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655170	45655170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	69	323	0	ENST00000407780.3:c.682G>T	p.Val228Phe	p.V228F	ENST00000407780	NM_001283052.1	228	Gtc/Ttc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24167470	24167470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	99	561	0	ENST00000263121.7:c.854A>T	p.Glu285Val	p.E285V	ENST00000263121	NM_003073.3	285	gAg/gTg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29092950	29092950	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	118	529	0	ENST00000328354.6:c.1034A>G	p.His345Arg	p.H345R	ENST00000328354	NM_007194.3	345	cAc/cGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41513536	41513536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	140	492	0	ENST00000263253.7:c.440C>A	p.Pro147His	p.P147H	ENST00000263253	NM_001429.3	147	cCt/cAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41569755	41569755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	118	514	0	ENST00000263253.7:c.4746G>T	p.Gln1582His	p.Q1582H	ENST00000263253	NM_001429.3	1582	caG/caT																																																																														
VHL	7428	MSKCC	GRCh37	3	10191581	10191581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	124	469	0	ENST00000256474.2:c.574C>A	p.Pro192Thr	p.P192T	ENST00000256474	NM_000551.3	192	Cca/Aca																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182741	38182741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	156	478	0	ENST00000396334.3:c.894C>A	p.Phe298Leu	p.F298L	ENST00000396334	NM_002468.4	298	ttC/ttA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47139539	47139539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	101	361	0	ENST00000409792.3:c.5048C>A	p.Ala1683Asp	p.A1683D	ENST00000409792	NM_014159.6	1683	gCc/gAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162942	47162942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	109	420	2	ENST00000409792.3:c.3184C>T	p.Pro1062Ser	p.P1062S	ENST00000409792	NM_014159.6	1062	Cca/Tca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164456	47164456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	56	329	0	ENST00000409792.3:c.1670C>A	p.Ser557Tyr	p.S557Y	ENST00000409792	NM_014159.6	557	tCt/tAt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437158	52437158	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	142	482	0	ENST00000460680.1:c.1886C>A	p.Pro629His	p.P629H	ENST00000460680	NM_004656.3	629	cCc/cAc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678778	52678778	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	87	409	0	ENST00000394830.3:c.841T>A	p.Tyr281Asn	p.Y281N	ENST00000394830	NM_018313.4	281	Tat/Aat																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702552	52702552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	117	614	0	ENST00000394830.3:c.346T>A	p.Phe116Ile	p.F116I	ENST00000394830	NM_018313.4	116	Ttc/Atc																																																																														
MITF	4286	MSKCC	GRCh37	3	69987002	69987002	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	166	668	0	ENST00000352241.4:c.384G>C	p.Lys128Asn	p.K128N	ENST00000352241	NM_198159.2	128	aaG/aaC																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71037168	71037168	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	89	318	0	ENST00000318789.4:c.1123G>T	p.Glu375Ter	p.E375*	ENST00000318789	NM_032682.5	375	Gaa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89456423	89456423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	62	195	0	ENST00000336596.2:c.1599C>A	p.Phe533Leu	p.F533L	ENST00000336596	NM_005233.5	533	ttC/ttA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462377	89462377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	147	622	0	ENST00000336596.2:c.1849G>A	p.Asp617Asn	p.D617N	ENST00000336596	NM_005233.5	617	Gat/Aat																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119585457	119585457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	104	525	0	ENST00000316626.5:c.928C>G	p.His310Asp	p.H310D	ENST00000316626		310	Cat/Gat																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202736	128202736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	95	571	1	ENST00000341105.2:c.984G>T	p.Gln328His	p.Q328H	ENST00000341105	NM_032638.4	328	caG/caT																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205191	128205191	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	76	339	0	ENST00000341105.2:c.250A>T	p.Met84Leu	p.M84L	ENST00000341105	NM_032638.4	84	Atg/Ttg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205715	128205715	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	153	639	1	ENST00000341105.2:c.160T>A	p.Ser54Thr	p.S54T	ENST00000341105	NM_032638.4	54	Tcg/Acg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374250	138374250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	144	506	0	ENST00000289153.2:c.3194G>A	p.Arg1065Gln	p.R1065Q	ENST00000289153	NM_006219.2	1065	cGg/cAg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417759	138417759	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	64	408	0	ENST00000289153.2:c.1760A>T	p.Asp587Val	p.D587V	ENST00000289153	NM_006219.2	587	gAt/gTt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138478044	138478044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	95	556	0	ENST00000289153.2:c.142C>T	p.Arg48Trp	p.R48W	ENST00000289153	NM_006219.2	48	Cgg/Tgg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664511	138664511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	53	372	1	ENST00000330315.3:c.1054G>A	p.Glu352Lys	p.E352K	ENST00000330315	NM_023067.3	352	Gag/Aag																																																																														
ATR	545	MSKCC	GRCh37	3	142231145	142231145	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	76	440	0	ENST00000350721.4:c.4809A>C	p.Lys1603Asn	p.K1603N	ENST00000350721	NM_001184.3	1603	aaA/aaC																																																																														
ATR	545	MSKCC	GRCh37	3	142281073	142281073	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	99	435	0	ENST00000350721.4:c.1170+1G>T		p.X390_splice	ENST00000350721	NM_001184.3	390																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185155333	185155333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	97	404	0	ENST00000265026.3:c.574G>T	p.Val192Leu	p.V192L	ENST00000265026	NM_004721.4	192	Gtg/Ttg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127273	55127273	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	116	463	0	ENST00000257290.5:c.61A>T	p.Ile21Phe	p.I21F	ENST00000257290	NM_006206.4	21	Atc/Ttc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55130031	55130031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	121	593	0	ENST00000257290.5:c.565T>C	p.Cys189Arg	p.C189R	ENST00000257290	NM_006206.4	189	Tgt/Cgt																																																																														
KDR	3791	MSKCC	GRCh37	4	55955592	55955592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	116	671	1	ENST00000263923.4:c.3353G>T	p.Arg1118Leu	p.R1118L	ENST00000263923	NM_002253.2	1118	cGa/cTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55962480	55962480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	70	415	0	ENST00000263923.4:c.2644C>A	p.Leu882Ile	p.L882I	ENST00000263923	NM_002253.2	882	Ctc/Atc																																																																														
KDR	3791	MSKCC	GRCh37	4	55968123	55968123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	129	541	0	ENST00000263923.4:c.2207C>T	p.Thr736Ile	p.T736I	ENST00000263923	NM_002253.2	736	aCc/aTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55979582	55979582	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	124	553	0	ENST00000263923.4:c.865T>G	p.Leu289Val	p.L289V	ENST00000263923	NM_002253.2	289	Ttg/Gtg																																																																														
KDR	3791	MSKCC	GRCh37	4	55980315	55980315	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	104	551	0	ENST00000263923.4:c.776A>T	p.Asn259Ile	p.N259I	ENST00000263923	NM_002253.2	259	aAc/aTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467563	66467563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	88	381	0	ENST00000273854.3:c.706G>T	p.Val236Leu	p.V236L	ENST00000273854	NM_004439.5	236	Gtg/Ttg																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384048	84384048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	138	467	0	ENST00000321945.7:c.804G>T	p.Lys268Asn	p.K268N	ENST00000321945	NM_139076.2	268	aaG/aaT																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384051	84384051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	121	454	0	ENST00000321945.7:c.801G>T	p.Glu267Asp	p.E267D	ENST00000321945	NM_139076.2	267	gaG/gaT																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99850069	99850069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	117	588	0	ENST00000280892.6:c.55G>T	p.Ala19Ser	p.A19S	ENST00000280892	NM_001130678.1	19	Gcg/Tcg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244264	153244264	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	104	282	0	ENST00000281708.4:c.1893G>C	p.Gln631His	p.Q631H	ENST00000281708	NM_033632.3	631	caG/caC																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524828	187524828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	99	483	0	ENST00000441802.2:c.10852G>T	p.Asp3618Tyr	p.D3618Y	ENST00000441802	NM_005245.3	3618	Gat/Tat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525016	187525016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	112	490	0	ENST00000441802.2:c.10664C>A	p.Ser3555Tyr	p.S3555Y	ENST00000441802	NM_005245.3	3555	tCt/tAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535414	187535414	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	134	504	0	ENST00000441802.2:c.9160T>G	p.Ser3054Ala	p.S3054A	ENST00000441802	NM_005245.3	3054	Tct/Gct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542188	187542188	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	87	381	0	ENST00000441802.2:c.5552A>T	p.Asp1851Val	p.D1851V	ENST00000441802	NM_005245.3	1851	gAc/gTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542543	187542543	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	113	507	0	ENST00000441802.2:c.5197T>A	p.Tyr1733Asn	p.Y1733N	ENST00000441802	NM_005245.3	1733	Tac/Aac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549437	187549437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	123	470	0	ENST00000441802.2:c.4681T>C	p.Trp1561Arg	p.W1561R	ENST00000441802	NM_005245.3	1561	Tgg/Cgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584578	187584578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	76	463	0	ENST00000441802.2:c.3455C>A	p.Ser1152Tyr	p.S1152Y	ENST00000441802	NM_005245.3	1152	tCt/tAt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31429599	31429599	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	183	682	0	ENST00000344624.3:c.3199T>G	p.Leu1067Val	p.L1067V	ENST00000344624		1067	Ttg/Gtg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160562	56160562	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	96	283	0	ENST00000399503.3:c.836T>A	p.Phe279Tyr	p.F279Y	ENST00000399503	NM_005921.1	279	tTt/tAt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754823	57754823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	48	284	0	ENST00000274289.3:c.367C>A	p.Gln123Lys	p.Q123K	ENST00000274289	NM_006622.3	123	Caa/Aaa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755538	57755538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	118	409	0	ENST00000274289.3:c.249C>G	p.Cys83Trp	p.C83W	ENST00000274289	NM_006622.3	83	tgC/tgG																																																																														
MSH3	4437	MSKCC	GRCh37	5	79966028	79966028	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201748817		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	144	692	0	ENST00000265081.6:c.692C>T	p.Pro231Leu	p.P231L	ENST00000265081	NM_002439.4	231	cCg/cTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	80024726	80024726	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	114	664	0	ENST00000265081.6:c.1510G>C	p.Ala504Pro	p.A504P	ENST00000265081	NM_002439.4	504	Gct/Cct																																																																														
APC	324	MSKCC	GRCh37	5	112170734	112170734	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	86	463	0	ENST00000257430.4:c.1830T>A	p.Asp610Glu	p.D610E	ENST00000257430	NM_000038.5	610	gaT/gaA																																																																														
APC	324	MSKCC	GRCh37	5	112170770	112170770	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	130	491	0	ENST00000257430.4:c.1866C>G	p.Tyr622Ter	p.Y622*	ENST00000257430	NM_000038.5	622	taC/taG																																																																														
APC	324	MSKCC	GRCh37	5	112170823	112170823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	123	486	0	ENST00000257430.4:c.1919G>A	p.Arg640Gln	p.R640Q	ENST00000257430	NM_000038.5	640	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112176305	112176305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	102	427	0	ENST00000257430.4:c.5014G>A	p.Gly1672Arg	p.G1672R	ENST00000257430	NM_000038.5	1672	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112178094	112178094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	99	445	0	ENST00000257430.4:c.6803C>G	p.Thr2268Ser	p.T2268S	ENST00000257430	NM_000038.5	2268	aCc/aGc																																																																														
APC	324	MSKCC	GRCh37	5	112179567	112179567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	67	394	1	ENST00000257430.4:c.8276G>A	p.Arg2759His	p.R2759H	ENST00000257430	NM_000038.5	2759	cGt/cAt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515373	149515373	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	113	454	0	ENST00000261799.4:c.109C>G	p.Pro37Ala	p.P37A	ENST00000261799	NM_002609.3	37	Ccc/Gcc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517960	176517960	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	75	553	0	ENST00000292408.4:c.458A>C	p.Gln153Pro	p.Q153P	ENST00000292408	NM_213647.1	153	cAg/cCg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637649	176637649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	186	656	0	ENST00000439151.2:c.2249C>A	p.Ala750Asp	p.A750D	ENST00000439151	NM_022455.4	750	gCt/gAt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176666826	176666826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	114	596	0	ENST00000439151.2:c.4262G>A	p.Gly1421Glu	p.G1421E	ENST00000439151	NM_022455.4	1421	gGa/gAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707728	176707728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	128	459	1	ENST00000439151.2:c.5785G>T	p.Gly1929Trp	p.G1929W	ENST00000439151	NM_022455.4	1929	Ggg/Tgg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722430	176722430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	111	480	0	ENST00000439151.2:c.8061T>A	p.Ser2687Arg	p.S2687R	ENST00000439151	NM_022455.4	2687	agT/agA																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056421	180056421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	66	301	0	ENST00000261937.6:c.823C>T	p.Arg275Trp	p.R275W	ENST00000261937	NM_182925.4	275	Cgg/Tgg																																																																														
IRF4	3662	MSKCC	GRCh37	6	401679	401679	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	82	429	0	ENST00000380956.4:c.1001T>A	p.Ile334Asn	p.I334N	ENST00000380956	NM_001195286.1	334	aTc/aAc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671194	30671194	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	140	616	0	ENST00000376406.3:c.5682+1G>C		p.X1894_splice	ENST00000376406	NM_014641.2	1894																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671679	30671679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	106	487	0	ENST00000376406.3:c.5281G>C	p.Val1761Leu	p.V1761L	ENST00000376406	NM_014641.2	1761	Gtg/Ctg																																																																														
STK19	8859	MSKCC	GRCh37	6	31947323	31947323	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	96	412	0	ENST00000375331.2:c.796G>T	p.Glu266Ter	p.E266*	ENST00000375331	NM_004197.1	266	Gaa/Taa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32183003	32183003	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	66	398	0	ENST00000375023.3:c.2021G>T	p.Arg674Ile	p.R674I	ENST00000375023	NM_004557.3	674	aGa/aTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188347	32188347	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	147	588	0	ENST00000375023.3:c.994T>A	p.Cys332Ser	p.C332S	ENST00000375023	NM_004557.3	332	Tgc/Agc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800585	32800585	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	158	671	0	ENST00000374899.4:c.962T>A	p.Ile321Asn	p.I321N	ENST00000374899	NM_018833.2	321	aTc/aAc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818159	32818159	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	165	641	0	ENST00000354258.4:c.1366G>T	p.Glu456Ter	p.E456*	ENST00000354258	NM_000593.5	456	Gaa/Taa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821071	32821071	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	176	823	2	ENST00000354258.4:c.523G>T	p.Glu175Ter	p.E175*	ENST00000354258	NM_000593.5	175	Gag/Tag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652067	36652067	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs4986867		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	139	550	0	ENST00000244741.5:c.189C>A	p.Phe63Leu	p.F63L	ENST00000244741	NM_000389.4	63	ttC/ttA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120705	94120705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	87	394	0	ENST00000369303.4:c.346C>G	p.Leu116Val	p.L116V	ENST00000369303	NM_004440.3	116	Ctg/Gtg																																																																														
FYN	2534	MSKCC	GRCh37	6	112029198	112029198	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	138	428	0	ENST00000368678.4:c.370T>A	p.Ser124Thr	p.S124T	ENST00000368678		124	Tcc/Acc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647406	117647406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	110	671	2	ENST00000368508.3:c.5538G>T	p.Glu1846Asp	p.E1846D	ENST00000368508	NM_002944.2	1846	gaG/gaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710660	117710660	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	76	393	0	ENST00000368508.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000368508	NM_002944.2	538	Gaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117717392	117717392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	107	500	0	ENST00000368508.3:c.815G>A	p.Gly272Asp	p.G272D	ENST00000368508	NM_002944.2	272	gGt/gAt																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519293	137519293	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	106	434	0	ENST00000367739.4:c.1345A>T	p.Ile449Leu	p.I449L	ENST00000367739	NM_000416.2	449	Ata/Tta																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192607	138192607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	115	441	2	ENST00000237289.4:c.243G>T	p.Lys81Asn	p.K81N	ENST00000237289	NM_001270507.1	81	aaG/aaT																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200300	138200300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	47	342	0	ENST00000237289.4:c.1718G>A	p.Ser573Asn	p.S573N	ENST00000237289	NM_001270507.1	573	aGc/aAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157406041	157406041	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	58	324	0	ENST00000346085.5:c.2281+2T>G		p.X761_splice	ENST00000346085	NM_020732.3	761																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157469914	157469914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	105	479	1	ENST00000346085.5:c.2708G>A	p.Gly903Glu	p.G903E	ENST00000346085	NM_020732.3	903	gGg/gAg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505364	157505364	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	108	375	1	ENST00000346085.5:c.3346-1G>T		p.X1116_splice	ENST00000346085	NM_020732.3	1116																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157527508	157527508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	125	382	1	ENST00000346085.5:c.5233G>A	p.Glu1745Lys	p.E1745K	ENST00000346085	NM_020732.3	1745	Gag/Aag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528426	157528426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	117	400	1	ENST00000346085.5:c.6151G>A	p.Gly2051Ser	p.G2051S	ENST00000346085	NM_020732.3	2051	Ggc/Agc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739819	41739819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	108	419	0	ENST00000242208.4:c.154C>A	p.Pro52Thr	p.P52T	ENST00000242208	NM_002192.2	52	Cca/Aca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55220353	55220353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	86	383	0	ENST00000275493.2:c.743G>A	p.Cys248Tyr	p.C248Y	ENST00000275493	NM_005228.3	248	tGc/tAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55270264	55270264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	116	649	0	ENST00000275493.2:c.3217C>A	p.Pro1073Thr	p.P1073T	ENST00000275493	NM_005228.3	1073	Ccc/Acc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509897	106509897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	98	434	1	ENST00000359195.3:c.1891C>A	p.Leu631Met	p.L631M	ENST00000359195	NM_002649.2	631	Ctg/Atg																																																																														
MET	4233	MSKCC	GRCh37	7	116339478	116339478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	76	259	0	ENST00000397752.3:c.340G>A	p.Asp114Asn	p.D114N	ENST00000397752	NM_000245.2	114	Gat/Aat																																																																														
MET	4233	MSKCC	GRCh37	7	116339946	116339946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	113	453	0	ENST00000397752.3:c.808G>T	p.Asp270Tyr	p.D270Y	ENST00000397752	NM_000245.2	270	Gat/Tat																																																																														
MET	4233	MSKCC	GRCh37	7	116423402	116423402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	76	297	0	ENST00000397752.3:c.3677C>A	p.Ala1226Asp	p.A1226D	ENST00000397752	NM_000245.2	1226	gCc/gAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151842256	151842256	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	121	335	0	ENST00000262189.6:c.14156T>A	p.Val4719Asp	p.V4719D	ENST00000262189	NM_170606.2	4719	gTc/gAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845234	151845234	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199858308		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	90	326	0	ENST00000262189.6:c.13778A>G	p.Asn4593Ser	p.N4593S	ENST00000262189	NM_170606.2	4593	aAt/aGt																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540330	23540330	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	104	457	0	ENST00000380871.4:c.73C>A	p.Pro25Thr	p.P25T	ENST00000380871	NM_006167.3	25	Ccg/Acg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194674	29194674	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	137	593	2	ENST00000240100.2:c.1054G>T	p.Glu352Ter	p.E352*	ENST00000240100	NM_001394.6	352	Gag/Tag																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38186915	38186915	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	162	678	0	ENST00000317025.8:c.1562A>G	p.Gln521Arg	p.Q521R	ENST00000317025	NM_023034.1	521	cAa/cGa																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205214	38205214	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	165	646	0	ENST00000317025.8:c.476A>T	p.Lys159Ile	p.K159I	ENST00000317025	NM_023034.1	159	aAa/aTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058479	69058479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	114	510	0	ENST00000288368.4:c.4123C>T	p.Gln1375Ter	p.Q1375*	ENST00000288368	NM_024870.2	1375	Caa/Taa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069654	69069654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	102	549	0	ENST00000288368.4:c.4329G>T	p.Gln1443His	p.Q1443H	ENST00000288368	NM_024870.2	1443	caG/caT																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978472	70978472	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	51	270	0	ENST00000276594.2:c.1181A>G	p.Glu394Gly	p.E394G	ENST00000276594	NM_024504.3	394	gAa/gGa																																																																														
NBN	4683	MSKCC	GRCh37	8	90965883	90965883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	64	213	0	ENST00000265433.3:c.1434C>G	p.Cys478Trp	p.C478W	ENST00000265433	NM_002485.4	478	tgC/tgG																																																																														
NBN	4683	MSKCC	GRCh37	8	90967727	90967727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	43	218	0	ENST00000265433.3:c.1181G>T	p.Arg394Ile	p.R394I	ENST00000265433	NM_002485.4	394	aGa/aTa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117869549	117869549	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	118	554	0	ENST00000297338.2:c.645T>A	p.Tyr215Ter	p.Y215*	ENST00000297338	NM_006265.2	215	taT/taA																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741506	145741506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	93	603	1	ENST00000428558.2:c.997G>T	p.Ala333Ser	p.A333S	ENST00000428558	NM_004260.3	333	Gct/Tct																																																																														
JAK2	3717	MSKCC	GRCh37	9	5089825	5089825	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	66	347	0	ENST00000381652.3:c.2723A>T	p.Asp908Val	p.D908V	ENST00000381652	NM_004972.3	908	gAc/gTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317943	8317943	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	51	341	0	ENST00000356435.5:c.5671-1G>A		p.X1891_splice	ENST00000356435		1891																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8319833	8319833	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	86	309	0	ENST00000356435.5:c.5668G>T	p.Glu1890Ter	p.E1890*	ENST00000356435		1890	Gag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500886	8500886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	136	519	0	ENST00000356435.5:c.1996C>A	p.Pro666Thr	p.P666T	ENST00000356435		666	Cct/Act																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974714	21974714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	51	323	0	ENST00000304494.5:c.113C>T	p.Pro38Leu	p.P38L	ENST00000304494	NM_000077.4	38	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974714	21974714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	51	323	0	ENST00000304494.5:c.113C>T	p.Pro38Leu	p.P38L	ENST00000304494	NM_000077.4	38	cCc/cTc																																																																														
TEK	7010	MSKCC	GRCh37	9	27185619	27185619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	155	611	0	ENST00000380036.4:c.1319C>T	p.Ser440Phe	p.S440F	ENST00000380036	NM_000459.3	440	tCt/tTt																																																																														
TEK	7010	MSKCC	GRCh37	9	27197357	27197357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	142	707	0	ENST00000380036.4:c.1669A>G	p.Thr557Ala	p.T557A	ENST00000380036	NM_000459.3	557	Acc/Gcc																																																																														
TEK	7010	MSKCC	GRCh37	9	27212754	27212754	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	143	626	0	ENST00000380036.4:c.2736C>G	p.Asp912Glu	p.D912E	ENST00000380036	NM_000459.3	912	gaC/gaG																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80336327	80336327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	89	330	0	ENST00000286548.4:c.992C>A	p.Ala331Asp	p.A331D	ENST00000286548	NM_002072.3	331	gCc/gAc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317121	87317121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	98	418	0	ENST00000277120.3:c.260T>A	p.Val87Asp	p.V87D	ENST00000277120		87	gTt/gAt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482164	87482164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	137	549	0	ENST00000277120.3:c.1451C>G	p.Ala484Gly	p.A484G	ENST00000277120		484	gCc/gGc																																																																														
SYK	6850	MSKCC	GRCh37	9	93641074	93641074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	122	461	0	ENST00000375746.1:c.1420C>G	p.Leu474Val	p.L474V	ENST00000375746	NM_001174167.1	474	Ctg/Gtg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231231	98231231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	99	414	0	ENST00000331920.6:c.2052G>T	p.Glu684Asp	p.E684D	ENST00000331920	NM_000264.3	684	gaG/gaT																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231356	98231356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	86	397	0	ENST00000331920.6:c.1927C>T	p.Pro643Ser	p.P643S	ENST00000331920	NM_000264.3	643	Cct/Tct																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98238404	98238404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	84	302	0	ENST00000331920.6:c.1640G>A	p.Ser547Asn	p.S547N	ENST00000331920	NM_000264.3	547	aGc/aAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268715	98268715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	104	404	0	ENST00000331920.6:c.368C>T	p.Thr123Ile	p.T123I	ENST00000331920	NM_000264.3	123	aCc/aTc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249447	110249447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	189	892	0	ENST00000374672.4:c.1126C>G	p.Pro376Ala	p.P376A	ENST00000374672	NM_004235.4	376	Cca/Gca																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912107	127912107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	91	394	0	ENST00000373547.4:c.763G>T	p.Val255Leu	p.V255L	ENST00000373547	NM_002721.4	255	Gta/Tta																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128420058	128420058	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	139	603	0	ENST00000265960.3:c.370T>A	p.Phe124Ile	p.F124I	ENST00000265960	NM_001006617.1	124	Ttt/Att																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778118	135778118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	103	517	0	ENST00000298552.3:c.2265G>T	p.Gln755His	p.Q755H	ENST00000298552	NM_001162426.1	755	caG/caT																																																																														
TSC1	7248	MSKCC	GRCh37	9	135782706	135782706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	106	522	1	ENST00000298552.3:c.1315C>A	p.Leu439Met	p.L439M	ENST00000298552	NM_001162426.1	439	Ctg/Atg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137293594	137293594	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	168	891	0	ENST00000481739.1:c.145T>G	p.Ser49Ala	p.S49A	ENST00000481739	NM_002957.4	49	Tct/Gct																																																																														
RXRA	6256	MSKCC	GRCh37	9	137309172	137309172	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs145832863		P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	109	574	0	ENST00000481739.1:c.779C>T	p.Ser260Leu	p.S260L	ENST00000481739	NM_002957.4	260	tCg/tTg																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139565414	139565414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	138	583	2	ENST00000308874.7:c.584C>T	p.Ala195Val	p.A195V	ENST00000308874		195	gCa/gTa																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815490	139815490	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	78	402	1	ENST00000247668.2:c.961G>C	p.Val321Leu	p.V321L	ENST00000247668	NM_021138.3	321	Gtg/Ctg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317557	1317557	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	101	473	1				ENST00000381566																																																																																	
ZRSR2	8233	MSKCC	GRCh37	X	15822262	15822262	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	120	409	0	ENST00000307771.7:c.341A>G	p.Gln114Arg	p.Q114R	ENST00000307771	NM_005089.3	114	cAg/cGg																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841306	15841306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	188	568	1	ENST00000307771.7:c.1390C>T	p.Arg464Cys	p.R464C	ENST00000307771	NM_005089.3	464	Cgt/Tgt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922964	39922964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	109	459	0	ENST00000378444.4:c.3744G>T	p.Gln1248His	p.Q1248H	ENST00000378444	NM_001123385.1	1248	caG/caT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932495	39932495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	166	676	0	ENST00000378444.4:c.2104C>A	p.Leu702Met	p.L702M	ENST00000378444	NM_001123385.1	702	Ctg/Atg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934115	39934115	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	107	473	0	ENST00000378444.4:c.484A>T	p.Thr162Ser	p.T162S	ENST00000378444	NM_001123385.1	162	Aca/Tca																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44911035	44911035	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	103	497	0	ENST00000377967.4:c.736T>G	p.Leu246Val	p.L246V	ENST00000377967	NM_021140.2	246	Tta/Gta																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44919275	44919275	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	33	260	0	ENST00000377967.4:c.1203G>C	p.Leu401Phe	p.L401F	ENST00000377967	NM_021140.2	401	ttG/ttC																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929103	44929103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	143	486	0	ENST00000377967.4:c.2203G>A	p.Gly735Arg	p.G735R	ENST00000377967	NM_021140.2	735	Gga/Aga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938515	44938515	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	161	587	1	ENST00000377967.4:c.3063G>A	p.Trp1021Ter	p.W1021*	ENST00000377967	NM_021140.2	1021	tgG/tgA																																																																														
RBM10	8241	MSKCC	GRCh37	X	47035926	47035926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	111	684	0	ENST00000329236.7:c.373G>A	p.Val125Met	p.V125M	ENST00000329236	NM_001204466.1	125	Gtg/Atg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038889	47038889	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	100	542	0	ENST00000329236.7:c.665A>T	p.Asn222Ile	p.N222I	ENST00000329236	NM_001204466.1	222	aAt/aTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041661	47041661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	139	688	2	ENST00000329236.7:c.1652C>T	p.Thr551Ile	p.T551I	ENST00000329236	NM_001204466.1	551	aCa/aTa																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650616	48650616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	159	631	0	ENST00000376670.3:c.586C>A	p.Leu196Met	p.L196M	ENST00000376670	NM_002049.3	196	Ctg/Atg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53253994	53253994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	123	585	0	ENST00000375401.3:c.78C>A	p.Asp26Glu	p.D26E	ENST00000375401	NM_004187.3	26	gaC/gaA																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410526	63410526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	77	469	0	ENST00000330258.3:c.2641C>T	p.Arg881Ter	p.R881*	ENST00000330258	NM_152424.3	881	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411472	63411472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	77	769	0	ENST00000330258.3:c.1695G>T	p.Gln565His	p.Q565H	ENST00000330258	NM_152424.3	565	caG/caT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413082	63413082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	81	643	0	ENST00000330258.3:c.85G>C	p.Ala29Pro	p.A29P	ENST00000330258	NM_152424.3	29	Gcc/Ccc																																																																														
AR	367	MSKCC	GRCh37	X	66766562	66766562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	208	818	0	ENST00000374690.3:c.1574G>C	p.Gly525Ala	p.G525A	ENST00000374690	NM_000044.3	525	gGc/gCc																																																																														
MED12	9968	MSKCC	GRCh37	X	70342192	70342192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	83	423	0	ENST00000374080.3:c.1244A>C	p.Gln415Pro	p.Q415P	ENST00000374080		415	cAg/cCg																																																																														
MED12	9968	MSKCC	GRCh37	X	70349020	70349020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	135	601	0	ENST00000374080.3:c.3532C>T	p.His1178Tyr	p.H1178Y	ENST00000374080		1178	Cac/Tac																																																																														
MED12	9968	MSKCC	GRCh37	X	70352336	70352336	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	111	567	0	ENST00000374080.3:c.4363C>T	p.Gln1455Ter	p.Q1455*	ENST00000374080		1455	Cag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70354956	70354956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	34	481	1	ENST00000374080.3:c.4878G>T	p.Glu1626Asp	p.E1626D	ENST00000374080		1626	gaG/gaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76889090	76889090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	128	638	0	ENST00000373344.5:c.4920G>C	p.Lys1640Asn	p.K1640N	ENST00000373344	NM_000489.3	1640	aaG/aaC																																																																														
ATRX	546	MSKCC	GRCh37	X	76918876	76918876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	93	642	0	ENST00000373344.5:c.4115G>T	p.Arg1372Ile	p.R1372I	ENST00000373344	NM_000489.3	1372	aGa/aTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938313	76938313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	102	538	0	ENST00000373344.5:c.2435C>A	p.Ser812Tyr	p.S812Y	ENST00000373344	NM_000489.3	812	tCt/tAt																																																																														
BTK	695	MSKCC	GRCh37	X	100617594	100617594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	142	679	1	ENST00000308731.7:c.475G>A	p.Ala159Thr	p.A159T	ENST00000308731	NM_000061.2	159	Gcc/Acc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123171438	123171438	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	87	545	0	ENST00000218089.9:c.350T>A	p.Leu117His	p.L117H	ENST00000218089	NM_001042749.1	117	cTt/cAt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179018	123179018	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	75	414	0	ENST00000218089.9:c.467G>C	p.Ser156Thr	p.S156T	ENST00000218089	NM_001042749.1	156	aGt/aCt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191727	123191727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	61	410	0	ENST00000218089.9:c.1316G>A	p.Arg439His	p.R439H	ENST00000218089	NM_001042749.1	439	cGt/cAt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217366	123217366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	100	582	0	ENST00000218089.9:c.3020C>A	p.Ser1007Tyr	p.S1007Y	ENST00000218089	NM_001042749.1	1007	tCt/tAt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224422	123224422	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	109	438	1	ENST00000218089.9:c.3278-3C>T		p.X1093_splice	ENST00000218089	NM_001042749.1	1093																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152860071	152860071	+	synonymous_variant	Silent	SNP	G	G	A			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	48	615	0	ENST00000406277.2:c.357C>T	p.Ile119=	p.I119=	ENST00000406277	NM_152274.4	119	atC/atT																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918845	50918847	+	missense_variant,splice_region_variant	Missense_Mutation	ONP	GAG	GAG	TAA			P-0016773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	86	587	0	ENST00000440232.2:c.2715_2717delinsTAA	p.Glu905_Arg906delinsAspLys	p.E905_R906delinsDK	ENST00000440232	NM_002691.3	905	gaGAGg/gaTAAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242646	16242646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	57	638	3	ENST00000375759.3:c.1267C>T	p.Arg423Cys	p.R423C	ENST00000375759	NM_015001.2	423	Cgc/Tgc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28605660	28605660	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	55	719	0	ENST00000253063.3:c.1264A>G	p.Lys422Glu	p.K422E	ENST00000253063	NM_031459.4	422	Aag/Gag																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115262276	115262276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	60	715	0	ENST00000438362.2:c.2278G>T	p.Gly760Ter	p.G760*	ENST00000438362	NM_001242891.1	760	Gga/Tga																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115275364	115275364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	52	677	1	ENST00000438362.2:c.1049C>T	p.Thr350Met	p.T350M	ENST00000438362	NM_001242891.1	350	aCg/aTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120480570	120480571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	49	519	0	ENST00000256646.2:c.3246dupA	p.Ala1083SerfsTer17	p.A1083Sfs*17	ENST00000256646	NM_024408.3	1082	-/A																																																																														
AKT3	10000	MSKCC	GRCh37	1	243668583	243668583	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	49	490	1	ENST00000263826.5:c.1408C>T	p.Gln470Ter	p.Q470*	ENST00000263826	NM_005465.4	470	Caa/Taa																																																																														
RET	5979	MSKCC	GRCh37	10	43608301	43608301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	119	774	3	ENST00000355710.3:c.1649G>T	p.Gly550Val	p.G550V	ENST00000355710	NM_020975.4	550	gGg/gTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	34	341	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
ATM	472	MSKCC	GRCh37	11	108175495	108175495	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	91	537	0	ENST00000278616.4:c.5590A>G	p.Thr1864Ala	p.T1864A	ENST00000278616	NM_000051.3	1864	Aca/Gca																																																																														
CBL	867	MSKCC	GRCh37	11	119170370	119170370	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	35	447	0	ENST00000264033.4:c.2600del	p.Gln867ArgfsTer38	p.Q867Rfs*38	ENST00000264033	NM_005188.3	867	cAg/cg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	442737	442737	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	47	582	0	ENST00000399788.2:c.1569del	p.Glu524SerfsTer13	p.E524Sfs*13	ENST00000399788	NM_001042603.1	523	ccC/cc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	45	325	0	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499650	18499650	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	55	707	0	ENST00000266497.5:c.1505A>G	p.Tyr502Cys	p.Y502C	ENST00000266497		502	tAt/tGt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21629929	21629929	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	68	422	3	ENST00000421138.2:c.868-3delT		p.X290_splice	ENST00000421138		290																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49423188	49423188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	49	626	1	ENST00000301067.7:c.14071G>A	p.Val4691Ile	p.V4691I	ENST00000301067	NM_003482.3	4691	Gtc/Atc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56494882	56494882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	51	485	0	ENST00000267101.3:c.3239G>A	p.Arg1080His	p.R1080H	ENST00000267101	NM_001982.3	1080	cGt/cAt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	169	742	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21565435	21565435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	46	636	5	ENST00000382592.4:c.451C>T	p.Arg151Trp	p.R151W	ENST00000382592	NM_014572.2	151	Cgg/Tgg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	62	473	2	ENST00000282397.4:c.166delG	p.Glu56LysfsTer12	p.E56Kfs*12	ENST00000282397	NM_002019.4	56	Gaa/aa																																																																														
RAD51	5888	MSKCC	GRCh37	15	41001215	41001215	+	splice_region_variant,intron_variant	Splice_Region	DEL	T	T	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	40	404	2	ENST00000267868.3:c.344-3del		p.X115_splice	ENST00000267868	NM_002875.4	115																																																																															
IDH2	3418	MSKCC	GRCh37	15	90630711	90630711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	51	651	1	ENST00000330062.3:c.775G>A	p.Asp259Asn	p.D259N	ENST00000330062	NM_002168.2	259	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943625	9943625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	55	616	0	ENST00000330684.3:c.1316T>C	p.Phe439Ser	p.F439S	ENST00000330684	NM_001134407.1	439	tTc/tCc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831056	72831056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	46	262	0	ENST00000268489.5:c.5525C>T	p.Pro1842Leu	p.P1842L	ENST00000268489	NM_006885.3	1842	cCa/cTa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974899	15974899	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	75	476	0	ENST00000268712.3:c.3976C>T	p.Arg1326Ter	p.R1326*	ENST00000268712	NM_006311.3	1326	Cga/Tga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627688	37627688	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	151	924	2	ENST00000447079.4:c.1607del	p.Pro536HisfsTer74	p.P536Hfs*74	ENST00000447079	NM_015083.1	535	Ccc/cc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	65	442	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437569	56437569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	81	628	1	ENST00000407977.2:c.893del	p.Cys298LeufsTer121	p.C298Lfs*121	ENST00000407977		298	tGt/tt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897444	78897444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	94	651	0	ENST00000306801.3:c.2779C>T	p.Arg927Trp	p.R927W	ENST00000306801	NM_020761.2	927	Cgg/Tgg																																																																														
PMAIP1	5366	MSKCC	GRCh37	18	57569908	57569910	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	33	321	0	ENST00000316660.6:c.90_92del	p.Arg31del	p.R31del	ENST00000316660	NM_021127.2	30	AGG/-																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5225740	5225740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	72	576	0	ENST00000357368.4:c.2492C>T	p.Ala831Val	p.A831V	ENST00000357368	NM_002850.3	831	gCa/gTa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355254	15355254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	26	327	1	ENST00000263377.2:c.2369C>T	p.Ala790Val	p.A790V	ENST00000263377	NM_058243.2	790	gCc/gTc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279905	18279905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	59	637	0	ENST00000222254.8:c.1988G>A	p.Gly663Asp	p.G663D	ENST00000222254	NM_005027.3	663	gGc/gAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	55	924	1	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210863	36210890	+	frameshift_variant	Frame_Shift_Del	DEL	CACCCCGGAGCCGGGCATGTGAGCCCTC	CACCCCGGAGCCGGGCATGTGAGCCCTC	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	88	745	0	ENST00000222270.7:c.620_647del	p.Arg207ProfsTer23	p.R207Pfs*23	ENST00000222270	NM_014727.1	205	gCACCCCGGAGCCGGGCATGTGAGCCCTCc/gc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213358	36213359	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	56	827	0	ENST00000222270.7:c.2561_2562del	p.Glu854AlafsTer34	p.E854Afs*34	ENST00000222270	NM_014727.1	852	aAG/a																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966267	25966267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	39	374	0	ENST00000435504.4:c.2939T>C	p.Val980Ala	p.V980A	ENST00000435504		980	gTt/gCt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26101046	26101046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	43	560	2	ENST00000435504.4:c.46G>A	p.Ala16Thr	p.A16T	ENST00000435504		16	Gcc/Acc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99193586	99193586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	28	367	0	ENST00000074304.5:c.2781G>T	p.Gln927His	p.Q927H	ENST00000074304	NM_001134224.1	927	caG/caT																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285158	198285158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	48	454	2	ENST00000335508.6:c.409G>A	p.Ala137Thr	p.A137T	ENST00000335508	NM_012433.2	137	Gca/Aca																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	103	418	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204810	128204810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	72	886	0	ENST00000341105.2:c.631G>A	p.Val211Ile	p.V211I	ENST00000341105	NM_032638.4	211	Gtc/Atc																																																																														
ATR	545	MSKCC	GRCh37	3	142266679	142266679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146504354		P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	48	661	0	ENST00000350721.4:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000350721	NM_001184.3	1082	cGt/cAt																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169953085	169953085	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	47	561	0	ENST00000295797.4:c.169A>G	p.Met57Val	p.M57V	ENST00000295797	NM_002740.5	57	Atg/Gtg																																																																														
KIT	3815	MSKCC	GRCh37	4	55604677	55604677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	61	427	0	ENST00000288135.5:c.2885G>A	p.Ser962Asn	p.S962N	ENST00000288135	NM_000222.2	962	aGc/aAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245344	153245344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	43	548	0	ENST00000281708.4:c.1847C>T	p.Thr616Ile	p.T616I	ENST00000281708	NM_033632.3	616	aCa/aTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	101	616	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945757	38945757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	49	300	0	ENST00000357387.3:c.4469C>T	p.Thr1490Met	p.T1490M	ENST00000357387	NM_152756.3	1490	aCg/aTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950366	38950366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	38	424	0	ENST00000357387.3:c.3584G>T	p.Arg1195Ile	p.R1195I	ENST00000357387	NM_152756.3	1195	aGa/aTa																																																																														
APC	324	MSKCC	GRCh37	5	112177434	112177435	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	58	472	0	ENST00000257430.4:c.6149dupA	p.Lys2051GlufsTer9	p.K2051Efs*9	ENST00000257430	NM_000038.5	2048	cca/ccAa																																																																														
APC	324	MSKCC	GRCh37	5	112178369	112178369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	49	558	0	ENST00000257430.4:c.7078G>T	p.Gly2360Cys	p.G2360C	ENST00000257430	NM_000038.5	2360	Ggt/Tgt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131977937	131977937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	54	445	0	ENST00000265335.6:c.3820G>A	p.Val1274Met	p.V1274M	ENST00000265335		1274	Gtg/Atg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287346	33287346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	40	489	0	ENST00000374542.5:c.1751C>T	p.Thr584Met	p.T584M	ENST00000374542	NM_001141970.1	584	aCg/aTg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	23	225	0	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	101	655	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141545617	141545617	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	66	820	0	ENST00000220592.5:c.2221A>G	p.Thr741Ala	p.T741A	ENST00000220592	NM_012154.3	741	Acc/Gcc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404302	139404302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	98	700	0	ENST00000277541.6:c.2852G>A	p.Ser951Asn	p.S951N	ENST00000277541	NM_017617.3	951	aGt/aAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	16	183	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223345	53223345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	58	308	0	ENST00000375401.3:c.4014G>T	p.Glu1338Asp	p.E1338D	ENST00000375401	NM_004187.3	1338	gaG/gaT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	51	445	0	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	222	159	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	30	627	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	239	244	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363243	40363243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	279	402	0	ENST00000397332.2:c.986C>T	p.Ser329Leu	p.S329L	ENST00000397332	NM_001033082.2	329	tCg/tTg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314981	1314981	+	downstream_gene_variant	3'Flank	SNP	G	G	C			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1255	189	611	0				ENST00000381566																																																																																	
ARID1A	8289	MSKCC	GRCh37	1	27056160	27056160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	167	431	0	ENST00000324856.7:c.1156C>T	p.Gln386Ter	p.Q386*	ENST00000324856	NM_006015.4	386	Cag/Tag																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971367	13971367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	89	295	0	ENST00000405192.2:c.562C>T	p.Arg188Cys	p.R188C	ENST00000405192	NM_001163147.1	188	Cgc/Tgc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	58	634	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739397	46739397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	100	393	0	ENST00000371975.4:c.1588G>C	p.Glu530Gln	p.E530Q	ENST00000371975	NM_003579.3	530	Gag/Cag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375038	118375038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	59	502	2	ENST00000534358.1:c.8431C>T	p.Arg2811Cys	p.R2811C	ENST00000534358	NM_005933.3	2811	Cgc/Tgc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623646	28623646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	89	517	0	ENST00000241453.7:c.911C>T	p.Ser304Leu	p.S304L	ENST00000241453	NM_004119.2	304	tCa/tTa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95599654	95599654	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	19	245	0	ENST00000343455.3:c.142C>T	p.Gln48Ter	p.Q48*	ENST00000343455	NM_177438.2	48	Cag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618622	37618622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	776	529	0	ENST00000447079.4:c.298C>T	p.Arg100Cys	p.R100C	ENST00000447079	NM_015083.1	100	Cgt/Tgt																																																																														
INSR	3643	MSKCC	GRCh37	19	7267639	7267639	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	322	618	0	ENST00000302850.5:c.369C>G	p.Phe123Leu	p.F123L	ENST00000302850	NM_000208.2	123	ttC/ttG																																																																														
INSR	3643	MSKCC	GRCh37	19	7267673	7267751	+	stop_gained,protein_altering_variant	Nonsense_Mutation	DEL	GATCCCCGGATGACCGTGAGGTTGGGGAACAGGTCCTTCAGGCTCTCGAGCCCATAGACCCGGAAGAGCAGCAAGTAAT	GATCCCCGGATGACCGTGAGGTTGGGGAACAGGTCCTTCAGGCTCTCGAGCCCATAGACCCGGAAGAGCAGCAAGTAAT	CATC			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	321	538	2	ENST00000302850.5:c.257_335delinsGATG	p.Asp86_Ser112delinsGlyTer	p.D86_S112delinsG*	ENST00000302850	NM_000208.2	86	gATTACTTGCTGCTCTTCCGGGTCTATGGGCTCGAGAGCCTGAAGGACCTGTTCCCCAACCTCACGGTCATCCGGGGATCa/gGATGa																																																																														
CARM1	10498	MSKCC	GRCh37	19	11024691	11024691	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	70	354	0	ENST00000327064.4:c.808G>T	p.Glu270Ter	p.E270*	ENST00000327064	NM_199141.1	270	Gag/Tag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662873	227662873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	127	502	2	ENST00000305123.5:c.582C>A	p.Phe194Leu	p.F194L	ENST00000305123	NM_005544.2	194	ttC/ttA																																																																														
EP300	2033	MSKCC	GRCh37	22	41546084	41546084	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	44	595	1	ENST00000263253.7:c.2699C>A	p.Ser900Ter	p.S900*	ENST00000263253	NM_001429.3	900	tCa/tAa																																																																														
PPARG	5468	MSKCC	GRCh37	3	12475550	12475550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	113	519	2	ENST00000287820.6:c.1424C>T	p.Thr475Met	p.T475M	ENST00000287820	NM_015869.4	475	aCg/aTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445078	89445078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	96	468	0	ENST00000336596.2:c.1398C>G	p.Ile466Met	p.I466M	ENST00000336596	NM_005233.5	466	atC/atG																																																																														
ATR	545	MSKCC	GRCh37	3	142215981	142215981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	213	419	0	ENST00000350721.4:c.5612C>G	p.Ser1871Cys	p.S1871C	ENST00000350721	NM_001184.3	1871	tCt/tGt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801122	1801122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	45	663	0	ENST00000260795.2:c.251C>T	p.Ser84Leu	p.S84L	ENST00000260795		84	tCg/tTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554969	187554969	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	49	285	0	ENST00000441802.2:c.4192T>C	p.Tyr1398His	p.Y1398H	ENST00000441802	NM_005245.3	1398	Tac/Cac																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674233	86674233	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	328	421	0	ENST00000274376.6:c.2365C>G	p.Arg789Gly	p.R789G	ENST00000274376	NM_002890.2	789	Cga/Gga																																																																														
APC	324	MSKCC	GRCh37	5	112102976	112102976	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	385	404	0	ENST00000257430.4:c.311C>G	p.Ser104Ter	p.S104*	ENST00000257430	NM_000038.5	104	tCa/tGa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638363	176638363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	518	550	0	ENST00000439151.2:c.2963C>G	p.Ser988Cys	p.S988C	ENST00000439151	NM_022455.4	988	tCt/tGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638471	176638471	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	586	657	0	ENST00000439151.2:c.3071C>G	p.Ser1024Ter	p.S1024*	ENST00000439151	NM_022455.4	1024	tCa/tGa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370902	55370902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	57	458	0	ENST00000297316.4:c.204C>G	p.Ile68Met	p.I68M	ENST00000297316	NM_022454.3	68	atC/atG																																																																														
ATRX	546	MSKCC	GRCh37	X	76944367	76944367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	140	269	0	ENST00000373344.5:c.538C>G	p.His180Asp	p.H180D	ENST00000373344	NM_000489.3	180	Cat/Gat																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	82	428	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	19	155	0				ENST00000310581	NM_198253.2																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18266990	18266990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187640248		P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	20	90	0	ENST00000222254.8:c.301C>T	p.Arg101Cys	p.R101C	ENST00000222254	NM_005027.3	101	Cgt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552630	18552630	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200787716		P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	63	492	2	ENST00000266497.5:c.2041C>T	p.Arg681Cys	p.R681C	ENST00000266497		681	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	62	347	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	62	347	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980844	40980844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	94	548	0	ENST00000373198.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000373198	NM_133170.3	548	Gaa/Aaa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36931998	36931998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	76	527	0	ENST00000361632.4:c.2471G>A	p.Gly824Glu	p.G824E	ENST00000361632		824	gGg/gAg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139802543	139802543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	125	650	0	ENST00000247668.2:c.388C>T	p.Pro130Ser	p.P130S	ENST00000247668	NM_021138.3	130	Ccg/Tcg																																																																														
ALK	238	MSKCC	GRCh37	2	29606667	29606667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	88	598	1	ENST00000389048.3:c.1213G>A	p.Glu405Lys	p.E405K	ENST00000389048	NM_004304.4	405	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70344985	70344985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	78	315	1	ENST00000374080.3:c.2215C>T	p.Pro739Ser	p.P739S	ENST00000374080		739	Ccc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	221	600	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317422	1317422	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	87	477	0				ENST00000381566																																																																																	
PIK3CB	5291	MSKCC	GRCh37	3	138384011	138384011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	104	574	0	ENST00000289153.2:c.2539C>T	p.Arg847Cys	p.R847C	ENST00000289153	NM_006219.2	847	Cgc/Tgc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73351584	73351584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	80	409	0	ENST00000377767.4:c.628C>T	p.Arg210Cys	p.R210C	ENST00000377767	NM_014953.3	210	Cgt/Tgt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476406	88476406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	57	355	0	ENST00000360948.2:c.1726G>A	p.Asp576Asn	p.D576N	ENST00000360948	NM_001012338.2	576	Gat/Aat																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68331729	68331729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	44	203	0	ENST00000487270.1:c.325C>T	p.Pro109Ser	p.P109S	ENST00000487270	NM_133509.3	109	Cca/Tca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	62	347	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123164869	123164869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	106	258	0	ENST00000218089.9:c.182G>A	p.Gly61Glu	p.G61E	ENST00000218089	NM_001042749.1	61	gGa/gAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450261	50450261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	65	423	1	ENST00000331340.3:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000331340	NM_006060.4	149	Cag/Tag																																																																														
ATR	545	MSKCC	GRCh37	3	142232477	142232477	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	66	417	0	ENST00000350721.4:c.4507C>T	p.Arg1503Ter	p.R1503*	ENST00000350721	NM_001184.3	1503	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284946	15284946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	75	679	2	ENST00000263388.2:c.4669C>T	p.Pro1557Ser	p.P1557S	ENST00000263388	NM_000435.2	1557	Cct/Tct																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117749	115117749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	105	552	0	ENST00000257566.3:c.686C>T	p.Thr229Met	p.T229M	ENST00000257566	NM_016569.3	229	aCg/aTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434685	99434685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	114	562	1	ENST00000268035.6:c.772G>A	p.Gly258Ser	p.G258S	ENST00000268035	NM_000875.3	258	Ggt/Agt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933751	36933751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	83	543	1	ENST00000361632.4:c.1648G>A	p.Glu550Lys	p.E550K	ENST00000361632		550	Gag/Aag																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625303	69625303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	71	607	0	ENST00000334134.2:c.490C>T	p.Arg164Cys	p.R164C	ENST00000334134	NM_005247.2	164	Cgc/Tgc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94212922	94212922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	78	398	1	ENST00000323929.3:c.320C>T	p.Pro107Leu	p.P107L	ENST00000323929	NM_005591.3	107	cCa/cTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552733	18552733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	77	531	2	ENST00000266497.5:c.2144G>A	p.Arg715Lys	p.R715K	ENST00000266497		715	aGa/aAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914527	32914527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	147	709	0	ENST00000380152.3:c.6035C>T	p.Ser2012Phe	p.S2012F	ENST00000380152		2012	tCc/tTc																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675092	40675092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	100	763	1	ENST00000249776.8:c.56C>T	p.Ser19Phe	p.S19F	ENST00000249776	NM_033286.3	19	tCt/tTt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43783915	43783915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	131	639	1	ENST00000382044.4:c.323C>T	p.Ser108Phe	p.S108F	ENST00000382044	NM_001141980.1	108	tCc/tTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641007	3641007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	116	783	0	ENST00000294008.3:c.2632G>T	p.Asp878Tyr	p.D878Y	ENST00000294008	NM_032444.2	878	Gac/Tac																																																																														
SLX4	84464	MSKCC	GRCh37	16	3642724	3642724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	84	574	0	ENST00000294008.3:c.2303C>T	p.Ser768Phe	p.S768F	ENST00000294008	NM_032444.2	768	tCt/tTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862935	9862935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	77	431	0	ENST00000330684.3:c.2368G>A	p.Glu790Lys	p.E790K	ENST00000330684	NM_001134407.1	790	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075158	16075158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	74	362	0	ENST00000268712.3:c.394C>T	p.Pro132Ser	p.P132S	ENST00000268712	NM_006311.3	132	Ccg/Tcg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448274	56448274	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	60	427	0	ENST00000407977.2:c.373A>G	p.Lys125Glu	p.K125E	ENST00000407977		125	Aag/Gag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349700	15349701	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	32	435	0	ENST00000263377.2:c.3873_3874delinsAA	p.Glu1292Lys	p.E1292K	ENST00000263377	NM_058243.2	1291	caGGag/caAAag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349701	15349702	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCGCTGCTGCTGCTGTTGCTTT			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	32	446	0	ENST00000263377.2:c.3872_3873insAAAGCAACAGCAGCAGCAGCGCCA	p.Gln1291_Glu1292insLysGlnGlnGlnGlnGlnArgGln	p.Q1291_E1292insKQQQQQRQ	ENST00000263377	NM_058243.2	1291	cag/caAAAGCAACAGCAGCAGCAGCGCCAg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354010	15354010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	11	173	0	ENST00000263377.2:c.2870C>T	p.Pro957Leu	p.P957L	ENST00000263377	NM_058243.2	957	cCc/cTc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945686	17945686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	87	692	0	ENST00000458235.1:c.2174C>T	p.Pro725Leu	p.P725L	ENST00000458235	NM_000215.3	725	cCc/cTc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872591	136872591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	52	366	1	ENST00000241393.3:c.907G>A	p.Ala303Thr	p.A303T	ENST00000241393	NM_003467.2	303	Gct/Act																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794815	242794816	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	42	320	1	ENST00000334409.5:c.393_394delinsAA	p.Ala132Thr	p.A132T	ENST00000334409	NM_005018.2	131	aaGGcg/aaAAcg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790129	40790129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	70	448	0	ENST00000373198.4:c.2602C>T	p.Pro868Ser	p.P868S	ENST00000373198	NM_133170.3	868	Ccc/Tcc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264656	46264656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	44	276	0	ENST00000371998.3:c.1526C>T	p.Ser509Phe	p.S509F	ENST00000371998		509	tCt/tTt																																																																														
EP300	2033	MSKCC	GRCh37	22	41548313	41548313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	90	555	0	ENST00000263253.7:c.3101C>G	p.Ala1034Gly	p.A1034G	ENST00000263253	NM_001429.3	1034	gCt/gGt																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205089	128205089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	66	512	0	ENST00000341105.2:c.352G>A	p.Val118Met	p.V118M	ENST00000341105	NM_032638.4	118	Gtg/Atg																																																																														
ATR	545	MSKCC	GRCh37	3	142254994	142254994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	76	371	0	ENST00000350721.4:c.3775C>T	p.Pro1259Ser	p.P1259S	ENST00000350721	NM_001184.3	1259	Cca/Tca																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185183598	185183598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	60	407	0	ENST00000265026.3:c.1452G>A	p.Met484Ile	p.M484I	ENST00000265026	NM_004721.4	484	atG/atA																																																																														
KDR	3791	MSKCC	GRCh37	4	55964308	55964308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	82	392	0	ENST00000263923.4:c.2505G>T	p.Lys835Asn	p.K835N	ENST00000263923	NM_002253.2	835	aaG/aaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55968178	55968178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	110	557	0	ENST00000263923.4:c.2152G>A	p.Gly718Arg	p.G718R	ENST00000263923	NM_002253.2	718	Ggg/Agg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31449462	31449462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	99	492	0	ENST00000344624.3:c.2747C>T	p.Ser916Leu	p.S916L	ENST00000344624		916	tCa/tTa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526631	31526631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	63	393	0	ENST00000344624.3:c.409C>T	p.Pro137Ser	p.P137S	ENST00000344624		137	Cct/Tct																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520143	176520144	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	76	652	2	ENST00000292408.4:c.1062_1063delinsAA	p.Asp355Asn	p.D355N	ENST00000292408	NM_213647.1	354	gaGGac/gaAAac																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553185	106553185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	68	469	0	ENST00000369096.4:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000369096	NM_001198.3	384	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687304	117687304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	62	357	0	ENST00000368508.3:c.2747C>T	p.Ser916Phe	p.S916F	ENST00000368508	NM_002944.2	916	tCt/tTt																																																																														
PARK2	5071	MSKCC	GRCh37	6	161771244	161771244	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	51	401	0	ENST00000366898.1:c.1286-1G>A		p.X429_splice	ENST00000366898	NM_004562.2	429																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508790	106508790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	76	437	0	ENST00000359195.3:c.784C>T	p.Pro262Ser	p.P262S	ENST00000359195	NM_002649.2	262	Ccc/Tcc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033198	69033198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	104	693	0	ENST00000288368.4:c.3638G>A	p.Arg1213Lys	p.R1213K	ENST00000288368	NM_024870.2	1213	aGg/aAg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36846926	36846926	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	35	401	0	ENST00000358127.4:c.1013G>A	p.Gly338Glu	p.G338E	ENST00000358127	NM_001280556.1	338	gGg/gAg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98212128	98212128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	67	463	0	ENST00000331920.6:c.3544C>T	p.Pro1182Ser	p.P1182S	ENST00000331920	NM_000264.3	1182	Cct/Tct																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127920559	127920559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	142	634	0	ENST00000373547.4:c.340C>T	p.His114Tyr	p.H114Y	ENST00000373547	NM_002721.4	114	Cat/Tat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911436	39911436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	104	340	0	ENST00000378444.4:c.5194G>A	p.Glu1732Lys	p.E1732K	ENST00000378444	NM_001123385.1	1732	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44919285	44919285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	41	139	0	ENST00000377967.4:c.1213C>T	p.Pro405Ser	p.P405S	ENST00000377967	NM_021140.2	405	Cca/Tca																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247523	53247523	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	128	332	0	ENST00000375401.3:c.286C>T	p.Gln96Ter	p.Q96*	ENST00000375401	NM_004187.3	96	Cag/Tag																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152860138	152860138	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	93	280	0	ENST00000406277.2:c.291-1G>A		p.X97_splice	ENST00000406277	NM_152274.4	97																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494641	2494641	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	72	572	0	ENST00000355716.4:c.781C>G	p.Pro261Ala	p.P261A	ENST00000355716	NM_003820.2	261	Cct/Gct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727111	40727111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	186	432	1	ENST00000373198.4:c.3853G>A	p.Asp1285Asn	p.D1285N	ENST00000373198	NM_133170.3	1285	Gat/Aat																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953135	17953135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	207	510	0	ENST00000458235.1:c.851G>A	p.Gly284Glu	p.G284E	ENST00000458235	NM_000215.3	284	gGa/gAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448564	89448564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	183	482	0	ENST00000336596.2:c.1528C>T	p.Arg510Ter	p.R510*	ENST00000336596	NM_005233.5	510	Cga/Tga																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50358686	50358686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	77	244	0	ENST00000331340.3:c.29C>T	p.Ser10Phe	p.S10F	ENST00000331340	NM_006060.4	10	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256750	16256750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	170	514	1	ENST00000375759.3:c.4015C>T	p.Arg1339Cys	p.R1339C	ENST00000375759	NM_015001.2	1339	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295204	1295204	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs2735943		P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	67	155	0				ENST00000310581	NM_198253.2																																																																																
ATR	545	MSKCC	GRCh37	3	142261583	142261583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	131	493	0	ENST00000350721.4:c.3374C>T	p.Pro1125Leu	p.P1125L	ENST00000350721	NM_001184.3	1125	cCc/cTc																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495732	72495732	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	199	449	0	ENST00000477973.2:c.338T>G	p.Trp114Gly	p.W114G	ENST00000477973	NM_012234.5	114	Tgg/Ggg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099341	157099341	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	35	242	0	ENST00000346085.5:c.278A>T	p.His93Leu	p.H93L	ENST00000346085	NM_020732.3	93	cAc/cTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76912075	76912075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	164	547	1	ENST00000373344.5:c.4189G>A	p.Glu1397Lys	p.E1397K	ENST00000373344	NM_000489.3	1397	Gaa/Aaa																																																																														
CIC	23152	MSKCC	GRCh37	19	42795276	42795276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	116	414	0	ENST00000575354.2:c.2356C>T	p.Pro786Ser	p.P786S	ENST00000575354	NM_015125.3	786	Cct/Tct																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651519	52651519	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	210	496	0	ENST00000394830.3:c.1577T>C	p.Leu526Ser	p.L526S	ENST00000394830	NM_018313.4	526	tTa/tCa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211270	36211270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1227	338	894	0	ENST00000222270.7:c.1021C>T	p.Gln341Ter	p.Q341*	ENST00000222270	NM_014727.1	341	Caa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295230	+	upstream_gene_variant	5'Flank	ONP	GGG	GGG	AGA			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	81	182	0				ENST00000310581	NM_198253.2																																																																																
SPEN	23013	MSKCC	GRCh37	1	16202863	16202863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	205	481	0	ENST00000375759.3:c.571C>T	p.Pro191Ser	p.P191S	ENST00000375759	NM_015001.2	191	Cca/Tca																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259708	16259708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	288	585	0	ENST00000375759.3:c.6973C>T	p.Leu2325Phe	p.L2325F	ENST00000375759	NM_015001.2	2325	Ctt/Ttt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089769	27089769	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	190	466	0	ENST00000324856.7:c.2725C>T	p.Gln909Ter	p.Q909*	ENST00000324856	NM_006015.4	909	Caa/Taa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834575	156834575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	199	601	0	ENST00000524377.1:c.343C>T	p.Pro115Ser	p.P115S	ENST00000524377	NM_002529.3	115	Cct/Tct																																																																														
RET	5979	MSKCC	GRCh37	10	43622128	43622128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	168	518	2	ENST00000355710.3:c.3145C>T	p.Pro1049Ser	p.P1049S	ENST00000355710	NM_020975.4	1049	Cct/Tct																																																																														
TET1	80312	MSKCC	GRCh37	10	70332438	70332438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	228	658	0	ENST00000373644.4:c.343C>T	p.Leu115Phe	p.L115F	ENST00000373644	NM_030625.2	115	Ctc/Ttc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332469	70332469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	212	666	0	ENST00000373644.4:c.374C>T	p.Ser125Phe	p.S125F	ENST00000373644	NM_030625.2	125	tCc/tTc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741860	17741861	+	missense_variant	Missense_Mutation	DNP	CT	CT	TG			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	13	107	0	ENST00000250003.3:c.531_532delinsTG	p.Phe178Val	p.F178V	ENST00000250003	NM_002478.4	177	gcCTtc/gcTGtc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77085386	77085386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	98	672	2	ENST00000356341.3:c.464C>T	p.Ser155Phe	p.S155F	ENST00000356341	NM_002576.4	155	tCt/tTt																																																																														
ATM	472	MSKCC	GRCh37	11	108098407	108098407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	142	436	0	ENST00000278616.4:c.56G>A	p.Arg19Lys	p.R19K	ENST00000278616	NM_000051.3	19	aGa/aAa																																																																														
CBL	867	MSKCC	GRCh37	11	119149244	119149244	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	255	465	0	ENST00000264033.4:c.1252T>C	p.Phe418Leu	p.F418L	ENST00000264033	NM_005188.3	418	Ttc/Ctc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435253	18435253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	58	361	0	ENST00000266497.5:c.238G>A	p.Glu80Lys	p.E80K	ENST00000266497		80	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800885	18800885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	81	504	0	ENST00000266497.5:c.4261G>A	p.Gly1421Arg	p.G1421R	ENST00000266497		1421	Gga/Aga																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111884933	111884933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	84	429	0	ENST00000341259.2:c.931G>A	p.Glu311Lys	p.E311K	ENST00000341259	NM_005475.2	311	Gag/Aag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109653	115109653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	154	605	0	ENST00000257566.3:c.2225C>T	p.Ser742Phe	p.S742F	ENST00000257566	NM_016569.3	742	tCc/tTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601228	28601228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	91	407	0	ENST00000241453.7:c.2204C>T	p.Ser735Phe	p.S735F	ENST00000241453	NM_004119.2	735	tCc/tTc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346005	73346005	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	145	504	0	ENST00000377767.4:c.1533T>A	p.His511Gln	p.H511Q	ENST00000377767	NM_014953.3	511	caT/caA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061283	38061283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	232	539	2	ENST00000250448.2:c.706G>T	p.Asp236Tyr	p.D236Y	ENST00000250448	NM_004496.3	236	Gac/Tac																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38632094	38632094	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	118	468	0	ENST00000299084.4:c.580C>T	p.Gln194Ter	p.Q194*	ENST00000299084	NM_152594.2	194	Cag/Tag																																																																														
B2M	567	MSKCC	GRCh37	15	45007752	45007753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	115	371	0	ENST00000558401.1:c.204dup	p.Val69SerfsTer21	p.V69Sfs*21	ENST00000558401	NM_004048.2	67	gaa/gAaa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50826577	50826577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	87	348	0	ENST00000398568.2:c.2302C>T	p.Pro768Ser	p.P768S	ENST00000398568	NM_001042412.1	768	Cct/Tct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992838	72992838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	135	437	0	ENST00000268489.5:c.1207C>T	p.Leu403Phe	p.L403F	ENST00000268489	NM_006885.3	403	Ctt/Ttt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89831392	89831392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	216	518	0	ENST00000389301.3:c.2684C>T	p.Pro895Leu	p.P895L	ENST00000389301	NM_000135.2	895	cCc/cTc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627242	37627242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	185	575	0	ENST00000447079.4:c.1157C>T	p.Pro386Leu	p.P386L	ENST00000447079	NM_015083.1	386	cCt/cTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884092	37884092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	152	625	0	ENST00000269571.5:c.3563G>A	p.Gly1188Glu	p.G1188E	ENST00000269571		1188	gGg/gAg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897295	78897295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	217	432	0	ENST00000306801.3:c.2630C>T	p.Ser877Phe	p.S877F	ENST00000306801	NM_020761.2	877	tCc/tTc																																																																														
YES1	7525	MSKCC	GRCh37	18	756700	756700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	186	483	0	ENST00000314574.4:c.128C>T	p.Pro43Leu	p.P43L	ENST00000314574	NM_005433.3	43	cCg/cTg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118968	3118968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	238	616	0	ENST00000078429.4:c.652C>T	p.His218Tyr	p.H218Y	ENST00000078429	NM_002067.2	218	Cac/Tac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231410	5231410	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	221	492	0	ENST00000357368.4:c.2066G>A	p.Trp689Ter	p.W689*	ENST00000357368	NM_002850.3	689	tGg/tAg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11015696	11015696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	232	513	0	ENST00000327064.4:c.290C>T	p.Ser97Phe	p.S97F	ENST00000327064	NM_199141.1	97	tCc/tTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271901	15271901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	232	539	1	ENST00000263388.2:c.6538C>T	p.Pro2180Ser	p.P2180S	ENST00000263388	NM_000435.2	2180	Cct/Tct																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367944	15367945	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	190	536	0	ENST00000263377.2:c.1381_1382delinsTT	p.Pro461Phe	p.P461F	ENST00000263377	NM_058243.2	461	CCt/TTt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968315	18968315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	244	654	0	ENST00000262803.5:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000262803	NM_002911.3	719	Ggc/Agc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218428	36218451	+	inframe_deletion	In_Frame_Del	DEL	GAGGCCCTGAGCGGGGCCCTCCAG	GAGGCCCTGAGCGGGGCCCTCCAG	-			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	191	414	0	ENST00000222270.7:c.4208_4231del	p.Glu1403_Gln1410del	p.E1403_Q1410del	ENST00000222270	NM_014727.1	1403	GAGGCCCTGAGCGGGGCCCTCCAG/-																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223176	36223176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	374	800	2	ENST00000222270.7:c.5726C>T	p.Pro1909Leu	p.P1909L	ENST00000222270	NM_014727.1	1909	cCc/cTc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714679	52714679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	205	473	0	ENST00000322088.6:c.437C>T	p.Ser146Leu	p.S146L	ENST00000322088	NM_014225.5	146	tCg/tTg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25994406	25994406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	85	215	0	ENST00000435504.4:c.407C>T	p.Ser136Leu	p.S136L	ENST00000435504		136	tCg/tTg																																																																														
ALK	238	MSKCC	GRCh37	2	29451797	29451797	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs79530637		P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	274	649	1	ENST00000389048.3:c.2768G>A	p.Gly923Glu	p.G923E	ENST00000389048	NM_004304.4	923	gGg/gAg																																																																														
ALK	238	MSKCC	GRCh37	2	29498304	29498304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	193	492	0	ENST00000389048.3:c.1876G>A	p.Asp626Asn	p.D626N	ENST00000389048	NM_004304.4	626	Gac/Aac																																																																														
ALK	238	MSKCC	GRCh37	2	29754793	29754793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	104	277	0	ENST00000389048.3:c.1142C>T	p.Pro381Leu	p.P381L	ENST00000389048	NM_004304.4	381	cCa/cTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288997	212288997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	124	505	0	ENST00000342788.4:c.2749G>A	p.Gly917Arg	p.G917R	ENST00000342788	NM_005235.2	917	Gga/Aga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023882	31023882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	248	630	0	ENST00000375687.4:c.3367C>T	p.Pro1123Ser	p.P1123S	ENST00000375687	NM_015338.5	1123	Cca/Tca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790000	40790000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	125	338	0	ENST00000373198.4:c.2731G>A	p.Glu911Lys	p.E911K	ENST00000373198	NM_133170.3	911	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980862	40980862	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	180	453	0	ENST00000373198.4:c.1624G>C	p.Val542Leu	p.V542L	ENST00000373198	NM_133170.3	542	Gtg/Ctg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44520582	44520582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	97	366	0	ENST00000291552.4:c.180G>C	p.Gln60His	p.Q60H	ENST00000291552	NM_006758.2	60	caG/caC																																																																														
PPARG	5468	MSKCC	GRCh37	3	12422910	12422910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	198	614	2	ENST00000287820.6:c.400C>T	p.Leu134Phe	p.L134F	ENST00000287820	NM_015869.4	134	Ctc/Ttc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119642288	119642288	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	139	545	0	ENST00000316626.5:c.409G>T	p.Glu137Ter	p.E137*	ENST00000316626		137	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927429	178927429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	107	482	1	ENST00000263967.3:c.1192C>T	p.Arg398Cys	p.R398C	ENST00000263967	NM_006218.2	398	Cgt/Tgt																																																																														
TP63	8626	MSKCC	GRCh37	3	189607171	189607171	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	251	653	0	ENST00000264731.3:c.1550A>G	p.Asn517Ser	p.N517S	ENST00000264731	NM_003722.4	517	aAt/aGt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156684	55156685	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	103	327	0	ENST00000257290.5:c.3085_3086delinsTT	p.Pro1029Phe	p.P1029F	ENST00000257290	NM_006206.4	1029	CCt/TTt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873716	35873716	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	149	443	0	ENST00000303115.3:c.672T>A	p.Tyr224Ter	p.Y224*	ENST00000303115	NM_002185.3	224	taT/taA																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178300	56178300	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	65	373	1	ENST00000399503.3:c.3273T>A	p.Cys1091Ter	p.C1091*	ENST00000399503	NM_005921.1	1091	tgT/tgA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67569232	67569232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	166	416	0	ENST00000274335.5:c.349G>A	p.Asp117Asn	p.D117N	ENST00000274335		117	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112178978	112178978	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	140	398	1	ENST00000257430.4:c.7687A>T	p.Thr2563Ser	p.T2563S	ENST00000257430	NM_000038.5	2563	Act/Tct																																																																														
NPM1	4869	MSKCC	GRCh37	5	170832354	170832354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	119	288	1	ENST00000296930.5:c.718G>A	p.Gly240Arg	p.G240R	ENST00000296930	NM_002520.6	240	Gga/Aga																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524337	176524338	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	195	570	1	ENST00000292408.4:c.2198_2199delinsAA	p.Arg733Lys	p.R733K	ENST00000292408	NM_213647.1	733	aGG/aAA																																																																														
FLT4	2324	MSKCC	GRCh37	5	180041089	180041089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	308	733	0	ENST00000261937.6:c.3310C>T	p.Leu1104Phe	p.L1104F	ENST00000261937	NM_182925.4	1104	Ctc/Ttc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056247	26056247	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	161	370	0	ENST00000343677.2:c.410A>C	p.Lys137Thr	p.K137T	ENST00000343677	NM_005319.3	137	aAg/aCg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675440	30675441	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	136	348	1	ENST00000376406.3:c.2915_2916delinsAA	p.Gly972Glu	p.G972E	ENST00000376406	NM_014641.2	972	gGG/gAA																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026828	6026828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	188	421	0	ENST00000265849.7:c.1568C>T	p.Ser523Phe	p.S523F	ENST00000265849	NM_000535.5	523	tCc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55224296	55224296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	177	558	1	ENST00000275493.2:c.1077C>A	p.Phe359Leu	p.F359L	ENST00000275493	NM_005228.3	359	ttC/ttA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845906	151845906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	203	609	0	ENST00000262189.6:c.13106G>A	p.Gly4369Glu	p.G4369E	ENST00000262189	NM_170606.2	4369	gGg/gAg																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538750	23538750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	97	237	0	ENST00000380871.4:c.689G>C	p.Ser230Thr	p.S230T	ENST00000380871	NM_006167.3	230	aGc/aCc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287286	38287286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	222	594	0	ENST00000425967.3:c.371C>T	p.Ser124Phe	p.S124F	ENST00000425967	NM_001174067.1	124	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020465	69020465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	189	551	1	ENST00000288368.4:c.2837C>T	p.Ser946Phe	p.S946F	ENST00000288368	NM_024870.2	946	tCt/tTt																																																																														
RAD21	5885	MSKCC	GRCh37	8	117869002	117869002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	127	493	0	ENST00000297338.2:c.697C>T	p.Leu233Phe	p.L233F	ENST00000297338	NM_006265.2	233	Ctt/Ttt																																																																														
TEK	7010	MSKCC	GRCh37	9	27228239	27228239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	201	548	1	ENST00000380036.4:c.3236C>T	p.Pro1079Leu	p.P1079L	ENST00000380036	NM_000459.3	1079	cCt/cTt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137309090	137309090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	285	803	2	ENST00000481739.1:c.697G>A	p.Glu233Lys	p.E233K	ENST00000481739	NM_002957.4	233	Gag/Aag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321306	1321306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	135	454	0	ENST00000381566.1:c.449T>C	p.Val150Ala	p.V150A	ENST00000381566		150	gTt/gCt																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1327717	1327717	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	176	499	0	ENST00000381566.1:c.164A>G	p.Asn55Ser	p.N55S	ENST00000381566		55	aAc/aGc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412226	63412226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	307	772	0	ENST00000330258.3:c.941G>A	p.Gly314Glu	p.G314E	ENST00000330258	NM_152424.3	314	gGg/gAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939973	76939973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	155	606	1	ENST00000373344.5:c.775G>A	p.Glu259Lys	p.E259K	ENST00000373344	NM_000489.3	259	Gaa/Aaa																																																																														
BTK	695	MSKCC	GRCh37	X	100615617	100615617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	201	550	3	ENST00000308731.7:c.715G>A	p.Asp239Asn	p.D239N	ENST00000308731	NM_000061.2	239	Gat/Aat																																																																														
CIC	23152	MSKCC	GRCh37	19	42791247	42791247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	180	519	0	ENST00000575354.2:c.307C>T	p.Pro103Ser	p.P103S	ENST00000575354	NM_015125.3	103	Cct/Tct																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623206	52623206	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	156	415	0	ENST00000394830.3:c.2845C>T	p.Gln949Ter	p.Q949*	ENST00000394830	NM_018313.4	949	Cag/Tag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522689	176522689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	182	610	0	ENST00000292408.4:c.1786G>A	p.Val596Met	p.V596M	ENST00000292408	NM_213647.1	596	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	89	600	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0016954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	110	985	0	ENST00000269305.4:c.572_574del	p.Pro191del	p.P191del	ENST00000269305	NM_001126112.2	191	cCTCag/cag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711984	89711984	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	54	544	0	ENST00000371953.3:c.604del	p.Thr202LeufsTer19	p.T202Lfs*19	ENST00000371953	NM_000314.4	201	gAa/ga																																																																														
EP300	2033	MSKCC	GRCh37	22	41566488	41566488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	108	835	1	ENST00000263253.7:c.4365G>T	p.Gln1455His	p.Q1455H	ENST00000263253	NM_001429.3	1455	caG/caT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295183	1295183	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0016954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	75	411	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	127	426	1				ENST00000310581	NM_198253.2																																																																																
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	81	295	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	285	683	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538374	9538374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	134	397	0	ENST00000353224.5:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000353224	NM_177990.2	542	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	200	543	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716344	18716344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	214	512	0	ENST00000266497.5:c.3691G>A	p.Glu1231Lys	p.E1231K	ENST00000266497		1231	Gaa/Aaa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287871	33287871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	249	651	0	ENST00000374542.5:c.1382C>T	p.Ser461Phe	p.S461F	ENST00000374542	NM_001141970.1	461	tCt/tTt																																																																														
TP63	8626	MSKCC	GRCh37	3	189587167	189587167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	49	481	0	ENST00000264731.3:c.1184C>T	p.Ser395Phe	p.S395F	ENST00000264731	NM_003722.4	395	tCc/tTc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73351584	73351584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	47	386	0	ENST00000377767.4:c.628C>T	p.Arg210Cys	p.R210C	ENST00000377767	NM_014953.3	210	Cgt/Tgt																																																																														
TP63	8626	MSKCC	GRCh37	3	189587161	189587161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	184	489	0	ENST00000264731.3:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000264731	NM_003722.4	393	cGa/cAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	54	438	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421355	12421355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1486	89	823	0	ENST00000287820.6:c.235G>A	p.Glu79Lys	p.E79K	ENST00000287820	NM_015869.4	79	Gaa/Aaa																																																																														
JUN	3725	MSKCC	GRCh37	1	59248558	59248558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	212	554	0	ENST00000371222.2:c.185C>T	p.Thr62Ile	p.T62I	ENST00000371222	NM_002228.3	62	aCc/aTc																																																																														
CBL	867	MSKCC	GRCh37	11	119144675	119144675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	201	500	0	ENST00000264033.4:c.688C>A	p.Leu230Met	p.L230M	ENST00000264033	NM_005188.3	230	Ctg/Atg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211519	46211519	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	146	365	0	ENST00000334344.6:c.485T>G	p.Val162Gly	p.V162G	ENST00000334344	NM_152641.2	162	gTg/gGg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918751	32918751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	238	506	0	ENST00000380152.3:c.6898C>T	p.Gln2300Ter	p.Q2300*	ENST00000380152		2300	Caa/Taa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639677	3639677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	312	1018	0	ENST00000294008.3:c.3962C>T	p.Pro1321Leu	p.P1321L	ENST00000294008	NM_032444.2	1321	cCg/cTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16021282	16021282	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	166	381	0	ENST00000268712.3:c.1975G>T	p.Glu659Ter	p.E659*	ENST00000268712	NM_006311.3	659	Gaa/Taa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618575	37618575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	226	566	0	ENST00000447079.4:c.251C>T	p.Ser84Phe	p.S84F	ENST00000447079	NM_015083.1	84	tCc/tTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134266	11134266	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	264	620	0	ENST00000344626.4:c.2932C>T	p.Arg978Ter	p.R978*	ENST00000344626	NM_003072.3	978	Cga/Tga																																																																														
XPO1	7514	MSKCC	GRCh37	2	61709635	61709635	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	126	309	0	ENST00000401558.2:c.2852A>C	p.Asn951Thr	p.N951T	ENST00000401558	NM_003400.3	951	aAt/aCt																																																																														
FYN	2534	MSKCC	GRCh37	6	112020744	112020744	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	243	526	0	ENST00000368678.4:c.827A>G	p.Gln276Arg	p.Q276R	ENST00000368678		276	cAg/cGg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117700256	117700256	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	290	708	0	ENST00000368508.3:c.2563A>T	p.Ile855Phe	p.I855F	ENST00000368508	NM_002944.2	855	Att/Ttt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273238	55273238	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	272	604	0	ENST00000275493.2:c.3561T>A	p.Phe1187Leu	p.F1187L	ENST00000275493	NM_005228.3	1187	ttT/ttA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031666	69031666	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	154	460	0	ENST00000288368.4:c.3422-1G>A		p.X1141_splice	ENST00000288368	NM_024870.2	1141																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8339017	8339017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	197	492	1	ENST00000356435.5:c.5284C>T	p.Arg1762Trp	p.R1762W	ENST00000356435		1762	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971073	21971086	+	frameshift_variant	Frame_Shift_Del	DEL	CACCAGCGTGTCCA	CACCAGCGTGTCCA	-			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	101	433	0	ENST00000304494.5:c.272_285delTGGACACGCTGGTG	p.Leu91ArgfsTer24	p.L91Rfs*24	ENST00000304494	NM_000077.4	91	cTGGACACGCTGGTG/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971073	21971086	+	frameshift_variant	Frame_Shift_Del	DEL	CACCAGCGTGTCCA	CACCAGCGTGTCCA	-			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	101	433	0	ENST00000304494.5:c.272_285delTGGACACGCTGGTG	p.Leu91ArgfsTer24	p.L91Rfs*24	ENST00000304494	NM_000077.4	91	cTGGACACGCTGGTG/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971073	21971086	+	frameshift_variant	Frame_Shift_Del	DEL	CACCAGCGTGTCCA	CACCAGCGTGTCCA	-			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	101	433	0	ENST00000304494.5:c.272_285delTGGACACGCTGGTG	p.Leu91ArgfsTer24	p.L91Rfs*24	ENST00000304494	NM_000077.4	91	cTGGACACGCTGGTG/c																																																																														
TEK	7010	MSKCC	GRCh37	9	27157952	27157952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	235	618	0	ENST00000380036.4:c.176G>A	p.Arg59Lys	p.R59K	ENST00000380036	NM_000459.3	59	aGg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	124	117	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	125	685	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	137	886	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	11	368	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056021	26056021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	55	239	0	ENST00000343677.2:c.636G>C	p.Lys212Asn	p.K212N	ENST00000343677	NM_005319.3	212	aaG/aaC																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	265	740	0	ENST00000344626.4:c.3484G>A	p.Gly1162Ser	p.G1162S	ENST00000344626	NM_003072.3	1162	Ggc/Agc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857275	9857275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	63	509	1	ENST00000330684.3:c.4126C>T	p.Arg1376Cys	p.R1376C	ENST00000330684	NM_001134407.1	1376	Cgc/Tgc																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495709	72495709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	90	564	1	ENST00000477973.2:c.361C>A	p.Phe121Leu	p.F121L	ENST00000477973	NM_012234.5	121	ttC/ttA																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46543213	46543213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	136	809	0	ENST00000262741.5:c.288G>A	p.Met96Ile	p.M96I	ENST00000262741	NM_003629.3	96	atG/atA																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981506	201981506	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	356	666	0	ENST00000359651.3:c.420T>G	p.Ile140Met	p.I140M	ENST00000359651		140	atT/atG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420846	49420846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	152	495	0	ENST00000301067.7:c.14903C>T	p.Pro4968Leu	p.P4968L	ENST00000301067	NM_003482.3	4968	cCt/cTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81922855	81922855	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	75	483	0	ENST00000359376.3:c.844G>C	p.Glu282Gln	p.E282Q	ENST00000359376	NM_002661.3	282	Gag/Cag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89849513	89849513	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	42	368	0	ENST00000389301.3:c.1471-3C>G		p.X491_splice	ENST00000389301	NM_000135.2	491																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246581	41246581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	258	784	1	ENST00000357654.3:c.967G>A	p.Gly323Arg	p.G323R	ENST00000357654	NM_007294.3	323	Gga/Aga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976494	25976494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	83	523	0	ENST00000435504.4:c.1051G>C	p.Glu351Gln	p.E351Q	ENST00000435504		351	Gag/Cag																																																																														
ATR	545	MSKCC	GRCh37	3	142278247	142278247	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	125	662	0	ENST00000350721.4:c.1578G>C	p.Lys526Asn	p.K526N	ENST00000350721	NM_001184.3	526	aaG/aaC																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120386	94120386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	82	387	0	ENST00000369303.4:c.665C>T	p.Ser222Leu	p.S222L	ENST00000369303	NM_004440.3	222	tCa/tTa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109321813	109321813	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	184	869	0	ENST00000436639.2:c.610G>C	p.Gly204Arg	p.G204R	ENST00000436639	NM_014454.2	204	Ggt/Cgt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985525	2985525	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	120	666	0	ENST00000396946.4:c.286G>C	p.Glu96Gln	p.E96Q	ENST00000396946	NM_032415.4	96	Gaa/Caa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836846	151836846	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	126	693	0	ENST00000262189.6:c.14374G>C	p.Glu4792Gln	p.E4792Q	ENST00000262189	NM_170606.2	4792	Gag/Cag																																																																														
RHOA	387	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	247	817	0	ENST00000418115.1:c.125A>C	p.Tyr42Ser	p.Y42S	ENST00000418115	NM_001664.2	42	tAt/tCt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	68	297	1	ENST00000304494.5:c.334C>T	p.Arg112Cys	p.R112C	ENST00000304494	NM_000077.4	112	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	68	297	1	ENST00000304494.5:c.334C>T	p.Arg112Cys	p.R112C	ENST00000304494	NM_000077.4	112	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	68	297	1	ENST00000304494.5:c.334C>T	p.Arg112Cys	p.R112C	ENST00000304494	NM_000077.4	112	Cgt/Tgt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946237	71946248	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TGAATCCTATGG	TGAATCCTATGG	-			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	311	724	0	ENST00000298229.2:c.2496_2503+4del		p.X832_splice	ENST00000298229	NM_001567.3	832																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18478035	18478035	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	168	755	0	ENST00000266497.5:c.1272+3A>G		p.X424_splice	ENST00000266497		424																																																																															
AKT1	207	MSKCC	GRCh37	14	105236758	105237081	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	CTGTGGGTGTAGACAGCTCAGACCCCGGTGCCCCACCTCCCTGCCACCTCCACCCACCCACAGCTCCAGTAGGAAGCCAACCTCTTAAAGCACGGCCAGCACGCTGCCATACTGCCAGGAAACTGAGACAGGGCCCCACAGATTGACACAGGGACCTGGGCCCTCAGAGCACTGCCTCCCACCCTGATCATTGGCACTCTCCAAAAGGAACCTTTTTAAATATTTAGATTTTAAAACATCTGAAGCCAAAAAAGCTGAACACTGCAGGCCTCTCTGAGTGTGGAGAGAAAAGGGAGTGGGCGGGGGCAGGCAGTGGCCCCTCAC	CTGTGGGTGTAGACAGCTCAGACCCCGGTGCCCCACCTCCCTGCCACCTCCACCCACCCACAGCTCCAGTAGGAAGCCAACCTCTTAAAGCACGGCCAGCACGCTGCCATACTGCCAGGAAACTGAGACAGGGCCCCACAGATTGACACAGGGACCTGGGCCCTCAGAGCACTGCCTCCCACCCTGATCATTGGCACTCTCCAAAAGGAACCTTTTTAAATATTTAGATTTTAAAACATCTGAAGCCAAAAAAGCTGAACACTGCAGGCCTCTCTGAGTGTGGAGAGAAAAGGGAGTGGGCGGGGGCAGGCAGTGGCCCCTCAC	-			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	70	546	1	ENST00000349310.3:c.1363+1_1364-1del		p.X455_splice	ENST00000349310	NM_001014432.1	455																																																																															
TRAF7	84231	MSKCC	GRCh37	16	2223538	2223538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	286	731	0	ENST00000326181.6:c.1069G>A	p.Asp357Asn	p.D357N	ENST00000326181	NM_032271.2	357	Gac/Aac																																																																														
CDH1	999	MSKCC	GRCh37	16	68853266	68853270	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAG	GGGAG	-			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	585	680	0	ENST00000261769.5:c.1650_1654del	p.Glu551PhefsTer2	p.E551Ffs*2	ENST00000261769	NM_004360.3	550	aGGGAG/a																																																																														
AXL	558	MSKCC	GRCh37	19	41744376	41744383	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GCCCCTGG	GCCCCTGG	-			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	35	549	0	ENST00000301178.4:c.1001_1008del	p.Leu334ProfsTer2	p.L334Pfs*2	ENST00000301178	NM_021913.4	332	gtGCCCCTGGgc/gtgc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082307	16082307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	50	918	3	ENST00000281043.3:c.121G>A	p.Asp41Asn	p.D41N	ENST00000281043	NM_005378.4	41	Gac/Aac																																																																														
KIT	3815	MSKCC	GRCh37	4	55564569	55564569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	55	643	0	ENST00000288135.5:c.457G>T	p.Gly153Trp	p.G153W	ENST00000288135	NM_000222.2	153	Ggg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	81	313	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	521	700	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793483	18793483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	129	315	0	ENST00000266497.5:c.4180G>A	p.Glu1394Lys	p.E1394K	ENST00000266497		1394	Gaa/Aaa																																																																														
CDH1	999	MSKCC	GRCh37	16	68846037	68846037	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	219	422	0	ENST00000261769.5:c.1009-1G>C		p.X337_splice	ENST00000261769	NM_004360.3	337																																																																															
RRAGC	64121	MSKCC	GRCh37	1	39325092	39325092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	133	431	0	ENST00000373001.3:c.227C>T	p.Ser76Phe	p.S76F	ENST00000373001	NM_022157.3	76	tCc/tTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133210937	133210937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	126	452	0	ENST00000320574.5:c.5839G>A	p.Glu1947Lys	p.E1947K	ENST00000320574	NM_006231.2	1947	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133252409	133252409	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	85	222	0	ENST00000320574.5:c.1021-3C>G		p.X341_splice	ENST00000320574	NM_006231.2	341																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	11984678	11984678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	88	291	0	ENST00000353533.5:c.224G>A	p.Arg75Lys	p.R75K	ENST00000353533	NM_003010.3	75	aGa/aAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883246	37883246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199905364		P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	131	411	0	ENST00000269571.5:c.3149C>T	p.Ser1050Leu	p.S1050L	ENST00000269571		1050	tCa/tTa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884145	37884145	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	185	544	0	ENST00000269571.5:c.3616C>T	p.Gln1206Ter	p.Q1206*	ENST00000269571		1206	Cag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288349	15288349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	276	729	0	ENST00000263388.2:c.4390G>A	p.Glu1464Lys	p.E1464K	ENST00000263388	NM_000435.2	1464	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860777	45860777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	138	401	0	ENST00000391945.4:c.1332C>G	p.Ile444Met	p.I444M	ENST00000391945	NM_000400.3	444	atC/atG																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972633	25972633	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	166	179	0	ENST00000435504.4:c.1792C>G	p.Gln598Glu	p.Q598E	ENST00000435504		598	Cag/Gag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25973181	25973181	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	186	225	0	ENST00000435504.4:c.1244C>G	p.Ser415Ter	p.S415*	ENST00000435504		415	tCa/tGa																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495709	72495709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	198	392	0	ENST00000477973.2:c.361C>G	p.Phe121Leu	p.F121L	ENST00000477973	NM_012234.5	121	ttC/ttG																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403604	138403604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	195	463	0	ENST00000289153.2:c.2178C>G	p.Ile726Met	p.I726M	ENST00000289153	NM_006219.2	726	atC/atG																																																																														
ATR	545	MSKCC	GRCh37	3	142254038	142254038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	128	305	0	ENST00000350721.4:c.3829G>A	p.Glu1277Lys	p.E1277K	ENST00000350721	NM_001184.3	1277	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	72	163	0				ENST00000310581	NM_198253.2																																																																																
PTEN	5728	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	82	241	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	132	357	0	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011128	12011128	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	55	235	0	ENST00000353533.5:c.535G>T	p.Glu179Ter	p.E179*	ENST00000353533	NM_003010.3	179	Gaa/Taa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597402	10597402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	168	477	0	ENST00000171111.5:c.1801C>G	p.Arg601Gly	p.R601G	ENST00000171111	NM_203500.1	601	Cgg/Ggg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197718	66197718	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	81	324	0	ENST00000273854.3:c.2981T>A	p.Met994Lys	p.M994K	ENST00000273854	NM_004439.5	994	aTg/aAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249359	153249359	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	95	232	0	ENST00000281708.4:c.1418+1G>A		p.X473_splice	ENST00000281708	NM_033632.3	473																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589588	67589598	+	protein_altering_variant	In_Frame_Del	DEL	GAATATAACAC	GAATATAACAC	AT			P-0017544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	35	150	1	ENST00000274335.5:c.1351_1361delinsAT	p.Glu451_Thr454delinsIle	p.E451_T454delinsI	ENST00000274335		451	GAATATAACACt/ATt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	138	256	0				ENST00000310581	NM_198253.2																																																																																
EP300	2033	MSKCC	GRCh37	22	41565535	41565535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	257	473	0	ENST00000263253.7:c.4201G>T	p.Val1401Phe	p.V1401F	ENST00000263253	NM_001429.3	1401	Gtt/Ttt																																																																														
KDR	3791	MSKCC	GRCh37	4	55960981	55960981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	273	409	0	ENST00000263923.4:c.2959G>C	p.Glu987Gln	p.E987Q	ENST00000263923	NM_002253.2	987	Gaa/Caa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	29	251	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TCT			P-0017633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	252	572	0	ENST00000269571.5:c.2326_2327insTCT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTCTgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0017635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	234	423	0				ENST00000310581	NM_198253.2																																																																																
EED	8726	MSKCC	GRCh37	11	85989481	85989481	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	126	507	1	ENST00000263360.6:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000263360	NM_003797.3	414	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0017635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	161	446	0	ENST00000288602.6:c.1798_1799delGTinsAG	p.Val600Arg	p.V600R	ENST00000288602	NM_004333.4	600	GTg/AGg																																																																														
KDR	3791	MSKCC	GRCh37	4	55962438	55962438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	333	650	0	ENST00000263923.4:c.2686C>T	p.Leu896Phe	p.L896F	ENST00000263923	NM_002253.2	896	Ctc/Ttc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713470	40713470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	100	428	0	ENST00000373198.4:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000373198	NM_133170.3	1349	Cgt/Tgt																																																																														
JUN	3725	MSKCC	GRCh37	1	59248432	59248432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	252	445	0	ENST00000371222.2:c.311C>T	p.Thr104Ile	p.T104I	ENST00000371222	NM_002228.3	104	aCa/aTa																																																																														
ATR	545	MSKCC	GRCh37	3	142277562	142277562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	85	465	1	ENST00000350721.4:c.1789C>T	p.Pro597Ser	p.P597S	ENST00000350721	NM_001184.3	597	Cca/Tca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247243	153247243	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	459	769	0	ENST00000281708.4:c.1559A>C	p.Asp520Ala	p.D520A	ENST00000281708	NM_033632.3	520	gAt/gCt																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127920628	127920628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	727	975	1	ENST00000373547.4:c.271G>A	p.Glu91Lys	p.E91K	ENST00000373547	NM_002721.4	91	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	48	115	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	220	646	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	445	400	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11288751	11288751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	178	549	0	ENST00000361445.4:c.3004C>T	p.Arg1002Ter	p.R1002*	ENST00000361445	NM_004958.3	1002	Cga/Tga																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932111	36932112	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	94	428	2	ENST00000361632.4:c.2357_2358delCCinsTT	p.Ser786Phe	p.S786F	ENST00000361632		786	tCC/tTT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	120	427	0	ENST00000371953.3:c.275A>G	p.Asp92Gly	p.D92G	ENST00000371953	NM_000314.4	92	gAc/gGc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244913	123244913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	199	749	1	ENST00000358487.5:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000358487	NM_000141.4	731	Gaa/Aaa																																																																														
WT1	7490	MSKCC	GRCh37	11	32410618	32410618	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	140	499	0	ENST00000332351.3:c.1540C>T	p.Gln514Ter	p.Q514*	ENST00000332351	NM_024426.4	514	Cag/Tag																																																																														
PGR	5241	MSKCC	GRCh37	11	100998991	100998991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	73	474	1	ENST00000325455.5:c.811G>A	p.Glu271Lys	p.E271K	ENST00000325455	NM_001202474.3	271	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435289	18435289	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	83	437	0	ENST00000266497.5:c.277delA	p.Ser93AlafsTer38	p.S93Afs*38	ENST00000266497		92	Aaa/aa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	129	517	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	94	476	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431691	49431692	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	158	712	0	ENST00000301067.7:c.9447_9448delCCinsTT	p.Leu3150Phe	p.L3150F	ENST00000301067	NM_003482.3	3149	tcCCtt/tcTTtt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588626	28588626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	165	596	0	ENST00000241453.7:c.2822C>T	p.Ser941Leu	p.S941L	ENST00000241453	NM_004119.2	941	tCg/tTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28963969	28963969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	77	360	0	ENST00000282397.4:c.1933G>A	p.Glu645Lys	p.E645K	ENST00000282397	NM_002019.4	645	Gaa/Aaa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614575	38614575	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	157	707	0	ENST00000299084.4:c.341delinsAA	p.Arg114LysfsTer20	p.R114Kfs*20	ENST00000299084	NM_152594.2	114	aGa/aAAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778638	3778638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	91	545	0	ENST00000262367.5:c.6410C>T	p.Pro2137Leu	p.P2137L	ENST00000262367	NM_004380.2	2137	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031979	10031979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	167	657	1	ENST00000330684.3:c.844G>A	p.Asp282Asn	p.D282N	ENST00000330684	NM_001134407.1	282	Gat/Aat																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59876539	59876539	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	150	569	0	ENST00000259008.2:c.1262A>G	p.Glu421Gly	p.E421G	ENST00000259008	NM_032043.2	421	gAa/gGa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39537632	39537636	+	stop_gained	Nonsense_Mutation	ONP	GATCT	GATCT	TAACC			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	79	354	0	ENST00000262039.4:c.166_170delGATCTinsTAACC	p.AspLeu56TerPro	p.DL56*P	ENST00000262039	NM_002647.2	56	GATCTt/TAACCt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222530	2222530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	170	654	1	ENST00000398665.3:c.3362C>T	p.Ser1121Leu	p.S1121L	ENST00000398665	NM_032482.2	1121	tCg/tTg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110574	4110574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	194	608	3	ENST00000262948.5:c.383C>T	p.Pro128Leu	p.P128L	ENST00000262948	NM_030662.3	128	cCg/cTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954587	17954587	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	169	739	0	ENST00000458235.1:c.307C>T	p.Arg103Cys	p.R103C	ENST00000458235	NM_000215.3	103	Cgc/Tgc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972788	25972788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	81	413	0	ENST00000435504.4:c.1637C>T	p.Pro546Leu	p.P546L	ENST00000435504		546	cCa/cTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790129	40790129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	110	515	0	ENST00000373198.4:c.2602C>T	p.Pro868Ser	p.P868S	ENST00000373198	NM_133170.3	868	Ccc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101200	41101200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	89	542	0	ENST00000373198.4:c.1156C>T	p.Pro386Ser	p.P386S	ENST00000373198	NM_133170.3	386	Ccg/Tcg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458537	12458537	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140204299		P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	190	728	2	ENST00000287820.6:c.1154G>A	p.Arg385Gln	p.R385Q	ENST00000287820	NM_015869.4	385	cGa/cAa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799578	72799578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	125	485	1	ENST00000325599.8:c.1591C>T	p.Pro531Ser	p.P531S	ENST00000325599	NM_018130.2	531	Cct/Tct																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169988293	169988293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	159	512	0	ENST00000295797.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000295797	NM_002740.5	179	Cat/Tat																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750524	41750524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	137	596	0	ENST00000226382.2:c.104C>T	p.Ser35Phe	p.S35F	ENST00000226382	NM_003924.3	35	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1260659	1260659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	195	645	0	ENST00000310581.5:c.2900G>A	p.Gly967Glu	p.G967E	ENST00000310581	NM_198253.2	967	gGg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	106	349	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35873661	35873661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	87	389	0	ENST00000303115.3:c.617G>A	p.Arg206Gln	p.R206Q	ENST00000303115	NM_002185.3	206	cGa/cAa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876467	35876467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	109	542	0	ENST00000303115.3:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000303115	NM_002185.3	420	tCt/tTt																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271447	26271447	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	111	326	1	ENST00000305910.3:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000305910	NM_003534.2	56	Cag/Tag																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324166	31324166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	14	374	5	ENST00000412585.2:c.397C>T	p.Leu133Phe	p.L133F	ENST00000412585	NM_005514.6	133	Ctc/Ttc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979258	93979258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	123	500	0	ENST00000369303.4:c.1570G>A	p.Gly524Arg	p.G524R	ENST00000369303	NM_004440.3	524	Gga/Aga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662429	117662429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	150	527	0	ENST00000368508.3:c.4948C>T	p.Pro1650Ser	p.P1650S	ENST00000368508	NM_002944.2	1650	Cct/Tct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725524	117725524	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	161	607	0	ENST00000368508.3:c.357G>A	p.Trp119Ter	p.W119*	ENST00000368508	NM_002944.2	119	tgG/tgA																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962334	2962334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	342	655	0	ENST00000396946.4:c.2203G>A	p.Glu735Lys	p.E735K	ENST00000396946	NM_032415.4	735	Gaa/Aaa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935523	13935523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	200	350	0	ENST00000405192.2:c.1333C>T	p.Pro445Ser	p.P445S	ENST00000405192	NM_001163147.1	445	Ccc/Tcc																																																																														
MET	4233	MSKCC	GRCh37	7	116399527	116399527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	243	452	0	ENST00000397752.3:c.2347G>A	p.Gly783Arg	p.G783R	ENST00000397752	NM_000245.2	783	Gga/Aga																																																																														
BRAF	673	MSKCC	GRCh37	7	140477854	140477854	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	325	621	0	ENST00000288602.6:c.1454T>G	p.Leu485Trp	p.L485W	ENST00000288602	NM_004333.4	485	tTg/tGg																																																																														
BRAF	673	MSKCC	GRCh37	7	140494149	140494149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	440	836	0	ENST00000288602.6:c.1099C>T	p.Pro367Ser	p.P367S	ENST00000288602	NM_004333.4	367	Ccc/Tcc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860104	151860104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	265	512	3	ENST00000262189.6:c.10558C>T	p.Pro3520Ser	p.P3520S	ENST00000262189	NM_170606.2	3520	Cca/Tca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878329	151878329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	274	530	0	ENST00000262189.6:c.6616C>T	p.Pro2206Ser	p.P2206S	ENST00000262189	NM_170606.2	2206	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	69011995	69011995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	197	806	0	ENST00000288368.4:c.2632C>T	p.Pro878Ser	p.P878S	ENST00000288368	NM_024870.2	878	Cct/Tct																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069952	5069952	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	96	393	0	ENST00000381652.3:c.1541C>G	p.Thr514Arg	p.T514R	ENST00000381652	NM_004972.3	514	aCg/aGg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341785	8341785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	148	732	0	ENST00000356435.5:c.4855G>A	p.Glu1619Lys	p.E1619K	ENST00000356435		1619	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	94	336	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	94	336	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	94	336	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
TEK	7010	MSKCC	GRCh37	9	27202881	27202881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	151	650	0	ENST00000380036.4:c.1973C>T	p.Ser658Phe	p.S658F	ENST00000380036	NM_000459.3	658	tCt/tTt																																																																														
TEK	7010	MSKCC	GRCh37	9	27212890	27212890	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	163	621	0	ENST00000380036.4:c.2872A>T	p.Lys958Ter	p.K958*	ENST00000380036	NM_000459.3	958	Aaa/Taa																																																																														
SYK	6850	MSKCC	GRCh37	9	93624541	93624541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	140	580	0	ENST00000375746.1:c.632G>A	p.Gly211Glu	p.G211E	ENST00000375746	NM_001174167.1	211	gGg/gAg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	106	361	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152858079	152858105	+	inframe_deletion	In_Frame_Del	DEL	GCCCCATGGTAGCTGTCCCGCAGCAGG	GCCCCATGGTAGCTGTCCCGCAGCAGG	-			P-0017683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	137	300	0	ENST00000406277.2:c.510_536delCCTGCTGCGGGACAGCTACCATGGGGC	p.Leu172_Leu180del	p.L172_L180del	ENST00000406277	NM_152274.4	170	gcCCTGCTGCGGGACAGCTACCATGGGGCg/gcg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0017721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	100	712	0				ENST00000310581	NM_198253.2																																																																																
FAT1	2195	MSKCC	GRCh37	4	187521298	187521299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	77	840	0	ENST00000441802.2:c.11856dupT	p.Gly3953TrpfsTer19	p.G3953Wfs*19	ENST00000441802	NM_005245.3	3952	-/T																																																																														
TP53	7157	MSKCC	GRCh37	17	7578181	7578181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	92	924	2	ENST00000269305.4:c.668C>T	p.Pro223Leu	p.P223L	ENST00000269305	NM_001126112.2	223	cCt/cTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	64	656	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	64	656	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023247	27023259	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAGCCGCCCGG	CGGAGCCGCCCGG	-			P-0017721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	41	501	1	ENST00000324856.7:c.356_368delAGCCGCCCGGCGG	p.Glu119AlafsTer109	p.E119Afs*109	ENST00000324856	NM_006015.4	118	aCGGAGCCGCCCGGc/ac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	64	656	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858308	27858308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	28	622	1	ENST00000359303.2:c.263C>T	p.Ser88Leu	p.S88L	ENST00000359303	NM_003535.2	88	tCg/tTg																																																																														
CCND1	595	MSKCC	GRCh37	11	69456182	69456182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	78	779	2	ENST00000227507.2:c.101C>T	p.Ala34Val	p.A34V	ENST00000227507	NM_053056.2	34	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	65	772	0	ENST00000269305.4:c.776A>G	p.Asp259Gly	p.D259G	ENST00000269305	NM_001126112.2	259	gAc/gGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	51	493	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	62	592	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	106	635	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534473	187534473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	66	535	0	ENST00000441802.2:c.9253delC	p.Asp3086IlefsTer30	p.D3086Ifs*30	ENST00000441802	NM_005245.3	3085	Ctt/tt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178646	56178646	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	44	401	0	ENST00000399503.3:c.3619C>T	p.Gln1207Ter	p.Q1207*	ENST00000399503	NM_005921.1	1207	Cag/Tag																																																																														
HRAS	3265	MSKCC	GRCh37	11	534226	534226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	107	849	1	ENST00000311189.7:c.97G>T	p.Asp33Tyr	p.D33Y	ENST00000311189		33	Gac/Tac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532590	187532590	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	63	517	0	ENST00000441802.2:c.9803C>G	p.Ser3268Ter	p.S3268*	ENST00000441802	NM_005245.3	3268	tCa/tGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	115	405	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	115	405	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	115	405	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
TET1	80312	MSKCC	GRCh37	10	70333446	70333446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	94	782	0	ENST00000373644.4:c.1351G>A	p.Glu451Lys	p.E451K	ENST00000373644	NM_030625.2	451	Gag/Aag																																																																														
CASP8	841	MSKCC	GRCh37	2	202131218	202131218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	144	533	0	ENST00000358485.4:c.186delC	p.Phe62LeufsTer23	p.F62Lfs*23	ENST00000358485	NM_001080125.1	62	ttC/tt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139403410	139403411	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	89	765	0	ENST00000277541.6:c.3082_3083delCA	p.Gln1028AlafsTer36	p.Q1028Afs*36	ENST00000277541	NM_017617.3	1028	CAg/g																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417492	139417492	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	95	880	0	ENST00000277541.6:c.552delG	p.Lys185SerfsTer92	p.K185Sfs*92	ENST00000277541	NM_017617.3	184	caG/ca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	254	371	1				ENST00000310581	NM_198253.2																																																																																
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	192	211	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	548	516	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18576957	18576957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	383	451	1	ENST00000266497.5:c.2365G>T	p.Ala789Ser	p.A789S	ENST00000266497		789	Gcc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432321	49432322	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	543	508	0	ENST00000301067.7:c.8817_8818delCCinsTA	p.Pro2940Thr	p.P2940T	ENST00000301067	NM_003482.3	2939	gcCCct/gcTAct																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420203	88420203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	306	429	1	ENST00000360948.2:c.2483G>A	p.Gly828Glu	p.G828E	ENST00000360948	NM_001012338.2	828	gGg/gAg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226968	2226968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	494	400	3	ENST00000398665.3:c.4448C>T	p.Ala1483Val	p.A1483V	ENST00000398665	NM_032482.2	1483	gCc/gTc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62293867	62293867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	463	403	0	ENST00000508582.2:c.436C>T	p.Pro146Ser	p.P146S	ENST00000508582		146	Cct/Tct																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940060	49940060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	476	448	0	ENST00000296474.3:c.983C>T	p.Pro328Leu	p.P328L	ENST00000296474	NM_002447.2	328	cCa/cTa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80063845	80063845	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	445	579	0	ENST00000265081.6:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000265081	NM_002439.4	664	Cag/Tag																																																																														
HGF	3082	MSKCC	GRCh37	7	81335072	81335072	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	426	392	1	ENST00000222390.5:c.1758-3C>T		p.X586_splice	ENST00000222390	NM_000601.4	586																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151849915	151849915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	350	330	0	ENST00000262189.6:c.12401C>T	p.Pro4134Leu	p.P4134L	ENST00000262189	NM_170606.2	4134	cCg/cTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68934375	68934375	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	480	464	2	ENST00000288368.4:c.441G>T	p.Leu147Phe	p.L147F	ENST00000288368	NM_024870.2	147	ttG/ttT																																																																														
JAK2	3717	MSKCC	GRCh37	9	5123122	5123122	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	277	309	0	ENST00000381652.3:c.3177+1G>T		p.X1059_splice	ENST00000381652	NM_004972.3	1059																																																																															
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	210	278	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938952	76938952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	133	571	0	ENST00000373344.5:c.1796C>A	p.Pro599Gln	p.P599Q	ENST00000373344	NM_000489.3	599	cCa/cAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	173	384	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448592	89448592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	208	440	0	ENST00000336596.2:c.1556C>T	p.Thr519Met	p.T519M	ENST00000336596	NM_005233.5	519	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	85	474	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	193	400	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	252	556	1	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	145	426	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	69	259	0	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724560	162724560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	132	322	1	ENST00000367921.3:c.332G>A	p.Gly111Asp	p.G111D	ENST00000367921	NM_006182.2	111	gGc/gAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593616	55593616	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	116	364	0	ENST00000288135.5:c.1682A>C	p.Glu561Ala	p.E561A	ENST00000288135	NM_000222.2	561	gAg/gCg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204714	128204714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	185	604	0	ENST00000341105.2:c.727C>T	p.His243Tyr	p.H243Y	ENST00000341105	NM_032638.4	243	Cac/Tac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	234	559	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
MET	4233	MSKCC	GRCh37	7	116395560	116395560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	81	362	0	ENST00000397752.3:c.1853C>T	p.Thr618Met	p.T618M	ENST00000397752	NM_000245.2	618	aCg/aTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965260	81965260	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	97	292	0	ENST00000359376.3:c.2739+1G>A		p.X913_splice	ENST00000359376	NM_002661.3	913																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11137009	11137009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	187	528	0	ENST00000344626.4:c.3202G>A	p.Gly1068Ser	p.G1068S	ENST00000344626	NM_003072.3	1068	Ggc/Agc																																																																														
RHOA	387	MSKCC	GRCh37	3	49405964	49405964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	227	600	0	ENST00000418115.1:c.174G>T	p.Trp58Cys	p.W58C	ENST00000418115	NM_001664.2	58	tgG/tgT																																																																														
ABL1	25	MSKCC	GRCh37	9	133759443	133759443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	205	575	0	ENST00000318560.5:c.1766G>A	p.Arg589His	p.R589H	ENST00000318560	NM_005157.4	589	cGc/cAc																																																																														
BCL6	604	MSKCC	GRCh37	3	187446270	187446270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	138	364	1	ENST00000232014.4:c.1418delC	p.Pro473ArgfsTer117	p.P473Rfs*117	ENST00000232014	NM_001130845.1	473	cCg/cg																																																																														
IRF4	3662	MSKCC	GRCh37	6	407527	407527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	235	571	0	ENST00000380956.4:c.1285G>A	p.Asp429Asn	p.D429N	ENST00000380956	NM_001195286.1	429	Gat/Aat																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339175	65339175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180823763		P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	110	291	0	ENST00000342505.4:c.361G>A	p.Asp121Asn	p.D121N	ENST00000342505	NM_002227.2	121	Gac/Aac																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441457	52441457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	171	418	1	ENST00000460680.1:c.395G>A	p.Gly132Asp	p.G132D	ENST00000460680	NM_004656.3	132	gGc/gAc																																																																														
ATM	472	MSKCC	GRCh37	11	108158382	108158382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	50	431	3	ENST00000278616.4:c.4049C>T	p.Thr1350Met	p.T1350M	ENST00000278616	NM_000051.3	1350	aCg/aTg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609883	81609883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	87	231	0	ENST00000298171.2:c.1481G>A	p.Cys494Tyr	p.C494Y	ENST00000298171	NM_000369.2	494	tGc/tAc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99163121	99163121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	181	520	0	ENST00000074304.5:c.1127G>T	p.Arg376Leu	p.R376L	ENST00000074304	NM_001134224.1	376	cGc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829529	72829529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	147	439	0	ENST00000268489.5:c.7052G>A	p.Cys2351Tyr	p.C2351Y	ENST00000268489	NM_006885.3	2351	tGt/tAt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2213905	2213905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	252	629	2	ENST00000398665.3:c.1717G>A	p.Ala573Thr	p.A573T	ENST00000398665	NM_032482.2	573	Gcc/Acc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422567	225422567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	55	217	0	ENST00000264414.4:c.73A>G	p.Met25Val	p.M25V	ENST00000264414	NM_003590.4	25	Atg/Gtg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015106	37015106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	169	571	0	ENST00000358127.4:c.298G>A	p.Ala100Thr	p.A100T	ENST00000358127	NM_001280556.1	100	Gct/Act																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	160	469	3	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935355	36935355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	186	469	1	ENST00000361632.4:c.1372G>T	p.Gly458Cys	p.G458C	ENST00000361632		458	Ggc/Tgc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841231	15841236	+	inframe_deletion	In_Frame_Del	DEL	AGCCGG	AGCCGG	-			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	93	303	1	ENST00000307771.7:c.1338_1343delGAGCCG	p.Ser447_Arg448del	p.S447_R448del	ENST00000307771	NM_005089.3	439	AGCCGG/-																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778264	3778264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	113	344	0	ENST00000262367.5:c.6784G>A	p.Gly2262Ser	p.G2262S	ENST00000262367	NM_004380.2	2262	Ggc/Agc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	78	268	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	78	268	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	78	268	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71944549	71944549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	148	546	0	ENST00000298229.2:c.2105T>C	p.Ile702Thr	p.I702T	ENST00000298229	NM_001567.3	702	aTc/aCc																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839886	27839886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	156	355	1	ENST00000328488.2:c.208C>T	p.Arg70Cys	p.R70C	ENST00000328488	NM_003533.2	70	Cgc/Tgc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563212	21563212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	204	584	1	ENST00000382592.4:c.707G>T	p.Gly236Val	p.G236V	ENST00000382592	NM_014572.2	236	gGt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099017	27099017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	191	509	2	ENST00000324856.7:c.3433C>T	p.Gln1145Ter	p.Q1145*	ENST00000324856	NM_006015.4	1145	Cag/Tag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436431	110436431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	220	596	0	ENST00000375856.3:c.1970C>T	p.Thr657Met	p.T657M	ENST00000375856	NM_003749.2	657	aCg/aTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633323	3633323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	197	580	2	ENST00000294008.3:c.4928C>T	p.Ala1643Val	p.A1643V	ENST00000294008	NM_032444.2	1643	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	143	417	0	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626892	14626892	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	142	436	1	ENST00000254322.2:c.883C>T	p.Arg295Ter	p.R295*	ENST00000254322	NM_006145.1	295	Cga/Tga																																																																														
PGR	5241	MSKCC	GRCh37	11	100998193	100998193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	131	341	1	ENST00000325455.5:c.1609G>A	p.Val537Ile	p.V537I	ENST00000325455	NM_001202474.3	537	Gtc/Atc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836879	151836879	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	134	409	3	ENST00000262189.6:c.14344-3delT		p.X4782_splice	ENST00000262189	NM_170606.2	4782																																																																															
TNFRSF14	8764	MSKCC	GRCh37	1	2494618	2494618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	175	451	0	ENST00000355716.4:c.758C>T	p.Thr253Ile	p.T253I	ENST00000355716	NM_003820.2	253	aCa/aTa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11205041	11205041	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	187	600	0	ENST00000361445.4:c.4748A>G	p.Tyr1583Cys	p.Y1583C	ENST00000361445	NM_004958.3	1583	tAc/tGc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11206849	11206849	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	115	371	0	ENST00000361445.4:c.4571-1G>T		p.X1524_splice	ENST00000361445	NM_004958.3	1524																																																																															
MTOR	2475	MSKCC	GRCh37	1	11303222	11303222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	188	514	1	ENST00000361445.4:c.1361G>A	p.Arg454His	p.R454H	ENST00000361445	NM_004958.3	454	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258350	16258350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	175	507	0	ENST00000375759.3:c.5615C>T	p.Ala1872Val	p.A1872V	ENST00000375759	NM_015001.2	1872	gCa/gTa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259861	16259861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	173	512	0	ENST00000375759.3:c.7126C>T	p.Gln2376Ter	p.Q2376*	ENST00000375759	NM_015001.2	2376	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260426	16260426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	140	346	0	ENST00000375759.3:c.7691C>T	p.Ala2564Val	p.A2564V	ENST00000375759	NM_015001.2	2564	gCt/gTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260978	16260978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	105	272	0	ENST00000375759.3:c.8243C>T	p.Ala2748Val	p.A2748V	ENST00000375759	NM_015001.2	2748	gCt/gTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261007	16261007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	116	330	0	ENST00000375759.3:c.8272G>T	p.Gly2758Cys	p.G2758C	ENST00000375759	NM_015001.2	2758	Ggc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261481	16261481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	148	446	0	ENST00000375759.3:c.8746C>T	p.His2916Tyr	p.H2916Y	ENST00000375759	NM_015001.2	2916	Cac/Tac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261924	16261925	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	112	369	2	ENST00000375759.3:c.9189_9190delAGinsGA	p.Val3064Met	p.V3064M	ENST00000375759	NM_015001.2	3063	ccAGtg/ccGAtg																																																																														
SDHB	6390	MSKCC	GRCh37	1	17355108	17355108	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	131	384	0	ENST00000375499.3:c.410A>C	p.Lys137Thr	p.K137T	ENST00000375499	NM_003000.2	137	aAg/aCg																																																																														
STK40	83931	MSKCC	GRCh37	1	36820902	36820902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	161	432	0	ENST00000373129.3:c.475C>A	p.Leu159Met	p.L159M	ENST00000373129	NM_032017.1	159	Ctg/Atg																																																																														
STK40	83931	MSKCC	GRCh37	1	36823964	36823964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	217	584	0	ENST00000373129.3:c.218G>T	p.Arg73Met	p.R73M	ENST00000373129	NM_032017.1	73	aGg/aTg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933235	36933235	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	153	425	0	ENST00000361632.4:c.1882A>C	p.Ile628Leu	p.I628L	ENST00000361632		628	Atc/Ctc																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39305292	39305292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	208	585	1	ENST00000373001.3:c.1133G>A	p.Gly378Asp	p.G378D	ENST00000373001	NM_022157.3	378	gGt/gAt																																																																														
MPL	4352	MSKCC	GRCh37	1	43803829	43803829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	212	519	0	ENST00000372470.3:c.139G>A	p.Asp47Asn	p.D47N	ENST00000372470	NM_005373.2	47	Gac/Aac																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798434	45798434	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	174	534	0	ENST00000372115.3:c.534+1G>A		p.X178_splice	ENST00000372115	NM_001048171.1	178																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45799192	45799192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	132	455	0	ENST00000372115.3:c.199G>A	p.Val67Ile	p.V67I	ENST00000372115	NM_001048171.1	67	Gtc/Atc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46532618	46532618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	82	273	1	ENST00000262741.5:c.460G>A	p.Val154Met	p.V154M	ENST00000262741	NM_003629.3	154	Gtg/Atg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65301089	65301089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	19	182	0	ENST00000342505.4:c.3359G>A	p.Cys1120Tyr	p.C1120Y	ENST00000342505	NM_002227.2	1120	tGt/tAt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115263187	115263187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	175	460	0	ENST00000438362.2:c.2163G>T	p.Arg721Ser	p.R721S	ENST00000438362	NM_001242891.1	721	agG/agT																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165984	118165984	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	119	348	0	ENST00000369448.3:c.494T>C	p.Val165Ala	p.V165A	ENST00000369448	NM_017709.3	165	gTg/gCg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120480017	120480017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	169	403	0	ENST00000256646.2:c.3410G>A	p.Cys1137Tyr	p.C1137Y	ENST00000256646	NM_024408.3	1137	tGc/tAc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874281	155874281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	103	415	0	ENST00000368323.3:c.250G>T	p.Ala84Ser	p.A84S	ENST00000368323	NM_006912.5	84	Gcc/Tcc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155880471	155880471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	80	439	0	ENST00000368323.3:c.82G>T	p.Gly28Cys	p.G28C	ENST00000368323	NM_006912.5	28	Ggt/Tgt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162722910	162722910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	141	444	0	ENST00000367921.3:c.108G>A	p.Met36Ile	p.M36I	ENST00000367921	NM_006182.2	36	atG/atA																																																																														
CDC73	79577	MSKCC	GRCh37	1	193104717	193104717	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	74	345	0	ENST00000367435.3:c.421G>A	p.Glu141Lys	p.E141K	ENST00000367435	NM_024529.4	141	Gag/Aag																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206653434	206653434	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	147	429	0	ENST00000367120.3:c.1320delT	p.Arg441GlyfsTer49	p.R441Gfs*49	ENST00000367120	NM_014002.3	440	Ttt/tt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206664154	206664154	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	108	358	0	ENST00000367120.3:c.1696C>T	p.Leu566Phe	p.L566F	ENST00000367120	NM_014002.3	566	Ctt/Ttt																																																																														
PARP1	142	MSKCC	GRCh37	1	226578328	226578328	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	129	353	1	ENST00000366794.5:c.403-3C>T		p.X135_splice	ENST00000366794	NM_001618.3	135																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736302	243736302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	141	459	1	ENST00000263826.5:c.745C>T	p.Arg249Cys	p.R249C	ENST00000263826	NM_005465.4	249	Cgt/Tgt																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245927438	245927438	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	176	562	0	ENST00000388985.4:c.1090G>T	p.Gly364Ter	p.G364*	ENST00000388985		364	Gga/Tga																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097667	8097667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	63	219	2	ENST00000346208.3:c.49G>A	p.Ala17Thr	p.A17T	ENST00000346208		17	Gcc/Acc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63817050	63817050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	58	272	0	ENST00000279873.7:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000279873	NM_032199.2	341	Cga/Tga																																																																														
TET1	80312	MSKCC	GRCh37	10	70426966	70426966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	117	479	0	ENST00000373644.4:c.4626G>T	p.Lys1542Asn	p.K1542N	ENST00000373644	NM_030625.2	1542	aaG/aaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	167	269	0	ENST00000371953.3:c.801+1G>A		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114710979	114710979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	135	412	0	ENST00000543371.1:c.203C>A	p.Pro68His	p.P68H	ENST00000543371	NM_001198531.1	68	cCt/cAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925621	114925621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	162	510	0	ENST00000543371.1:c.1699G>A	p.Ala567Thr	p.A567T	ENST00000543371	NM_001198531.1	567	Gcc/Acc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243286	123243286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	169	629	0	ENST00000358487.5:c.2227G>A	p.Val743Met	p.V743M	ENST00000358487	NM_000141.4	743	Gtg/Atg																																																																														
HRAS	3265	MSKCC	GRCh37	11	533563	533563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	213	546	0	ENST00000311189.7:c.340G>T	p.Val114Leu	p.V114L	ENST00000311189		114	Gtg/Ttg																																																																														
HRAS	3265	MSKCC	GRCh37	11	533839	533839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	243	556	0	ENST00000311189.7:c.217C>T	p.Arg73Cys	p.R73C	ENST00000311189		73	Cgc/Tgc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14317373	14317373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	144	492	2	ENST00000256196.4:c.137C>A	p.Thr46Asn	p.T46N	ENST00000256196		46	aCc/aAc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742459	17742459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	118	388	0	ENST00000250003.3:c.641G>A	p.Ser214Asn	p.S214N	ENST00000250003	NM_002478.4	214	aGc/aAc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742493	17742493	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	156	475	1	ENST00000250003.3:c.675C>A	p.Cys225Ter	p.C225*	ENST00000250003	NM_002478.4	225	tgC/tgA																																																																														
WT1	7490	MSKCC	GRCh37	11	32413581	32413581	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	101	329	1	ENST00000332351.3:c.1369C>T	p.Gln457Ter	p.Q457*	ENST00000332351	NM_024426.4	457	Cag/Tag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129165	64129165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	191	544	0	ENST00000334205.4:c.703G>A	p.Ala235Thr	p.A235T	ENST00000334205	NM_003942.2	235	Gcc/Acc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138096	64138096	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	167	505	1	ENST00000334205.4:c.2019G>A	p.Trp673Ter	p.W673*	ENST00000334205	NM_003942.2	673	tgG/tgA																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572111	64572111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	157	390	0	ENST00000337652.1:c.1543G>A	p.Ala515Thr	p.A515T	ENST00000337652	NM_130803.2	515	Gca/Aca																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573729	64573729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	158	337	1	ENST00000337652.1:c.1039G>A	p.Ala347Thr	p.A347T	ENST00000337652	NM_130803.2	347	Gcg/Acg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948397	71948397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	249	753	0	ENST00000298229.2:c.3109G>T	p.Gly1037Trp	p.G1037W	ENST00000298229	NM_001567.3	1037	Ggg/Tgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948674	71948674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	111	482	0	ENST00000298229.2:c.3386C>T	p.Thr1129Met	p.T1129M	ENST00000298229	NM_001567.3	1129	aCg/aTg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195643	102195643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	152	478	0	ENST00000263464.3:c.403C>A	p.Arg135Ser	p.R135S	ENST00000263464	NM_001165.4	135	Cgt/Agt																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195706	102195706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	97	378	0	ENST00000263464.3:c.466G>A	p.Ala156Thr	p.A156T	ENST00000263464	NM_001165.4	156	Gcc/Acc																																																																														
ATM	472	MSKCC	GRCh37	11	108172433	108172433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	143	479	0	ENST00000278616.4:c.5236G>A	p.Gly1746Arg	p.G1746R	ENST00000278616	NM_000051.3	1746	Gga/Aga																																																																														
ATM	472	MSKCC	GRCh37	11	108175564	108175564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	97	426	0	ENST00000278616.4:c.5659G>A	p.Ala1887Thr	p.A1887T	ENST00000278616	NM_000051.3	1887	Gca/Aca																																																																														
ATM	472	MSKCC	GRCh37	11	108183190	108183190	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	90	416	2	ENST00000278616.4:c.5971G>T	p.Glu1991Ter	p.E1991*	ENST00000278616	NM_000051.3	1991	Gaa/Taa																																																																														
SDHD	6392	MSKCC	GRCh37	11	111959590	111959590	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	88	573	0	ENST00000375549.3:c.170-1G>A		p.X57_splice	ENST00000375549	NM_003002.3	57																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376788	118376788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	94	295	2	ENST00000534358.1:c.10181G>T	p.Gly3394Val	p.G3394V	ENST00000534358	NM_005933.3	3394	gGg/gTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118378271	118378271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	151	383	2	ENST00000534358.1:c.10782G>T	p.Gln3594His	p.Q3594H	ENST00000534358	NM_005933.3	3594	caG/caT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392125	118392125	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	129	324	0	ENST00000534358.1:c.11636A>T	p.Asp3879Val	p.D3879V	ENST00000534358	NM_005933.3	3879	gAc/gTc																																																																														
CBL	867	MSKCC	GRCh37	11	119144676	119144676	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	128	366	0	ENST00000264033.4:c.689T>C	p.Leu230Pro	p.L230P	ENST00000264033	NM_005188.3	230	cTg/cCg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656280	18656280	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	122	534	0	ENST00000266497.5:c.2959G>T	p.Gly987Ter	p.G987*	ENST00000266497		987	Gga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715747	18715747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	78	351	0	ENST00000266497.5:c.3578C>T	p.Pro1193Leu	p.P1193L	ENST00000266497		1193	cCt/cTt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628471	21628471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	132	657	0	ENST00000421138.2:c.1147G>A	p.Val383Met	p.V383M	ENST00000421138		383	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416378	49416378	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	114	315	0	ENST00000301067.7:c.16333G>T	p.Glu5445Ter	p.E5445*	ENST00000301067	NM_003482.3	5445	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432459	49432459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	58	572	0	ENST00000301067.7:c.8680C>T	p.Pro2894Ser	p.P2894S	ENST00000301067	NM_003482.3	2894	Ccg/Tcg																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480062	50480062	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	175	513	0	ENST00000394963.4:c.296C>A	p.Ser99Tyr	p.S99Y	ENST00000394963	NM_003076.4	99	tCc/tAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864315	57864315	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	125	429	1	ENST00000228682.2:c.1796delG	p.Gly599ValfsTer14	p.G599Vfs*14	ENST00000228682	NM_005269.2	598	Ggg/gg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864423	57864423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	178	401	1	ENST00000228682.2:c.1900G>T	p.Gly634Trp	p.G634W	ENST00000228682	NM_005269.2	634	Ggg/Tgg																																																																														
CDK4	1019	MSKCC	GRCh37	12	58144849	58144850	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	92	346	0	ENST00000257904.6:c.378_379delAG	p.Gly127ProfsTer31	p.G127Pfs*31	ENST00000257904	NM_000075.3	126	agAGgc/aggc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856416	111856416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	59	199	0	ENST00000341259.2:c.467C>T	p.Ala156Val	p.A156V	ENST00000341259	NM_005475.2	156	gCg/gTg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112892399	112892399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	94	406	0	ENST00000351677.2:c.557G>A	p.Arg186Gln	p.R186Q	ENST00000351677	NM_002834.3	186	cGg/cAg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120783951	120783951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	161	421	0	ENST00000257552.2:c.1034G>A	p.Gly345Asp	p.G345D	ENST00000257552	NM_002442.3	345	gGc/gAc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800851	120800851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	284	657	1	ENST00000257552.2:c.397G>A	p.Gly133Arg	p.G133R	ENST00000257552	NM_002442.3	133	Ggg/Agg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21555659	21555659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	137	503	0	ENST00000382592.4:c.2611C>T	p.His871Tyr	p.H871Y	ENST00000382592	NM_014572.2	871	Cat/Tat																																																																														
CDK8	1024	MSKCC	GRCh37	13	26978179	26978179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	136	492	1	ENST00000381527.3:c.1356G>T	p.Gln452His	p.Q452H	ENST00000381527	NM_001260.1	452	caG/caT																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622442	28622442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	103	427	1	ENST00000241453.7:c.1175G>A	p.Cys392Tyr	p.C392Y	ENST00000241453	NM_004119.2	392	tGt/tAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912360	32912360	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	75	356	0	ENST00000380152.3:c.3868T>C	p.Cys1290Arg	p.C1290R	ENST00000380152		1290	Tgc/Cgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914512	32914512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	134	528	3	ENST00000380152.3:c.6020C>T	p.Thr2007Ile	p.T2007I	ENST00000380152		2007	aCc/aTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954016	32954016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	175	616	1	ENST00000380152.3:c.9083C>T	p.Ala3028Val	p.A3028V	ENST00000380152		3028	gCa/gTa																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281470	49281470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	105	398	0	ENST00000282018.3:c.517C>T	p.Leu173Phe	p.L173F	ENST00000282018	NM_020377.2	173	Ctc/Ttc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346373	73346373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	115	376	0	ENST00000377767.4:c.1427G>A	p.Cys476Tyr	p.C476Y	ENST00000377767	NM_014953.3	476	tGt/tAt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103510763	103510763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	109	426	0	ENST00000355739.4:c.667C>T	p.Pro223Ser	p.P223S	ENST00000355739	NM_000123.3	223	Cca/Tca																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519094	103519094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	155	456	0	ENST00000355739.4:c.2432G>A	p.Ser811Asn	p.S811N	ENST00000355739	NM_000123.3	811	aGt/aAt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436748	110436748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	208	706	0	ENST00000375856.3:c.1653C>A	p.His551Gln	p.H551Q	ENST00000375856	NM_003749.2	551	caC/caA																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436990	110436990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	32	73	0	ENST00000375856.3:c.1411C>T	p.His471Tyr	p.H471Y	ENST00000375856	NM_003749.2	471	Cat/Tat																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437563	110437563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	249	650	0	ENST00000375856.3:c.838G>A	p.Ala280Thr	p.A280T	ENST00000375856	NM_003749.2	280	Gcg/Acg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093359	30093359	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	125	466	0	ENST00000331968.5:c.1904A>G	p.Gln635Arg	p.Q635R	ENST00000331968	NM_002742.2	635	cAg/cGg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609427	81609427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	145	486	0	ENST00000298171.2:c.1025A>G	p.Lys342Arg	p.K342R	ENST00000298171	NM_000369.2	342	aAg/aGg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560349	95560349	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	88	366	0	ENST00000343455.3:c.5240C>A	p.Ser1747Ter	p.S1747*	ENST00000343455	NM_177438.2	1747	tCg/tAg																																																																														
MGA	23269	MSKCC	GRCh37	15	41961633	41961633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	83	385	0	ENST00000219905.7:c.541C>A	p.Leu181Ile	p.L181I	ENST00000219905	NM_001164273.1	181	Ctt/Att																																																																														
MGA	23269	MSKCC	GRCh37	15	41961727	41961727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	113	407	0	ENST00000219905.7:c.635C>T	p.Ala212Val	p.A212V	ENST00000219905	NM_001164273.1	212	gCt/gTt																																																																														
MGA	23269	MSKCC	GRCh37	15	41989085	41989085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	72	544	0	ENST00000219905.7:c.1877G>A	p.Gly626Glu	p.G626E	ENST00000219905	NM_001164273.1	626	gGa/gAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42003074	42003074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	89	673	0	ENST00000219905.7:c.2611G>A	p.Val871Ile	p.V871I	ENST00000219905	NM_001164273.1	871	Gta/Ata																																																																														
MGA	23269	MSKCC	GRCh37	15	42032291	42032291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	194	620	0	ENST00000219905.7:c.4475G>A	p.Arg1492His	p.R1492H	ENST00000219905	NM_001164273.1	1492	cGt/cAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041435	42041435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	155	486	0	ENST00000219905.7:c.5630T>C	p.Val1877Ala	p.V1877A	ENST00000219905	NM_001164273.1	1877	gTg/gCg																																																																														
MGA	23269	MSKCC	GRCh37	15	42058673	42058673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	48	228	0	ENST00000219905.7:c.8393C>A	p.Ala2798Asp	p.A2798D	ENST00000219905	NM_001164273.1	2798	gCt/gAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708429	43708429	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	124	399	0	ENST00000382044.4:c.4867A>T	p.Ser1623Cys	p.S1623C	ENST00000382044	NM_001141980.1	1623	Agc/Tgc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748312	43748312	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	183	672	0	ENST00000382044.4:c.2494G>T	p.Glu832Ter	p.E832*	ENST00000382044	NM_001141980.1	832	Gag/Tag																																																																														
CD276	80381	MSKCC	GRCh37	15	73996311	73996311	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	16	74	0	ENST00000318443.5:c.1045A>G	p.Ser349Gly	p.S349G	ENST00000318443	NM_001024736.1	349	Agc/Ggc																																																																														
BLM	641	MSKCC	GRCh37	15	91358447	91358447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	187	576	0	ENST00000355112.3:c.4192A>G	p.Ile1398Val	p.I1398V	ENST00000355112	NM_000057.2	1398	Att/Gtt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465464	99465464	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	163	450	0	ENST00000268035.6:c.2289C>G	p.Tyr763Ter	p.Y763*	ENST00000268035	NM_000875.3	763	taC/taG																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500304	99500304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	124	419	0	ENST00000268035.6:c.3737G>T	p.Arg1246Leu	p.R1246L	ENST00000268035	NM_000875.3	1246	cGc/cTc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	360058	360058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	106	405	0	ENST00000262320.3:c.1031C>A	p.Pro344His	p.P344H	ENST00000262320	NM_003502.3	344	cCc/cAc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136231	2136231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	127	384	0	ENST00000219476.3:c.4700G>T	p.Gly1567Val	p.G1567V	ENST00000219476	NM_000548.3	1567	gGc/gTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647470	3647470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	188	521	0	ENST00000294008.3:c.1593G>T	p.Trp531Cys	p.W531C	ENST00000294008	NM_032444.2	531	tgG/tgT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778309	3778309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	111	329	0	ENST00000262367.5:c.6739C>A	p.Gln2247Lys	p.Q2247K	ENST00000262367	NM_004380.2	2247	Cag/Aag																																																																														
CYLD	1540	MSKCC	GRCh37	16	50826509	50826509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	40	341	0	ENST00000398568.2:c.2234C>T	p.Ala745Val	p.A745V	ENST00000398568	NM_001042412.1	745	gCa/gTa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56864572	56864572	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	114	350	0	ENST00000308159.5:c.1060G>T	p.Glu354Ter	p.E354*	ENST00000308159	NM_014669.4	354	Gag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644874	67644874	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	157	410	1	ENST00000264010.4:c.143del	p.Gly48ValfsTer14	p.G48Vfs*14	ENST00000264010	NM_006565.3	47	Ggg/gg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645275	67645276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	196	579	0	ENST00000264010.4:c.544dup	p.Glu182GlyfsTer9	p.E182Gfs*9	ENST00000264010	NM_006565.3	180	-/G																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645902	67645902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	158	416	0	ENST00000264010.4:c.830G>T	p.Arg277Leu	p.R277L	ENST00000264010	NM_006565.3	277	cGg/cTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68846044	68846044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	203	534	0	ENST00000261769.5:c.1015C>A	p.Pro339Thr	p.P339T	ENST00000261769	NM_004360.3	339	Cct/Act																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830230	72830230	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	36	198	0	ENST00000268489.5:c.6351G>C	p.Gln2117His	p.Q2117H	ENST00000268489	NM_006885.3	2117	caG/caC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991464	72991464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	194	491	0	ENST00000268489.5:c.2581C>A	p.Leu861Ile	p.L861I	ENST00000268489	NM_006885.3	861	Ctc/Atc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81939035	81939035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	99	359	0	ENST00000359376.3:c.1390G>A	p.Val464Met	p.V464M	ENST00000359376	NM_002661.3	464	Gtg/Atg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350707	89350707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	231	648	0	ENST00000301030.4:c.2243T>C	p.Leu748Pro	p.L748P	ENST00000301030	NM_001256183.1	748	cTg/cCg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89811409	89811409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	230	636	0	ENST00000389301.3:c.3584G>T	p.Arg1195Leu	p.R1195L	ENST00000389301	NM_000135.2	1195	cGg/cTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89825104	89825104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	167	409	0	ENST00000389301.3:c.2862C>A	p.Phe954Leu	p.F954L	ENST00000389301	NM_000135.2	954	ttC/ttA																																																																														
GPS2	2874	MSKCC	GRCh37	17	7218317	7218317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	126	458	0	ENST00000380728.2:c.55C>T	p.His19Tyr	p.H19Y	ENST00000380728		19	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7572941	7572941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	103	370	0	ENST00000269305.4:c.1168C>T	p.Pro390Ser	p.P390S	ENST00000269305	NM_001126112.2	390	Cct/Tct																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968877	15968877	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	147	391	0	ENST00000268712.3:c.4873G>C	p.Val1625Leu	p.V1625L	ENST00000268712	NM_006311.3	1625	Gtg/Ctg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118577	17118577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	205	523	1	ENST00000285071.4:c.1354G>A	p.Val452Met	p.V452M	ENST00000285071	NM_144997.5	452	Gtg/Atg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650831	37650831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	225	630	1	ENST00000447079.4:c.2303C>A	p.Pro768Gln	p.P768Q	ENST00000447079	NM_015083.1	768	cCa/cAa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475359	40475359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	89	373	0	ENST00000264657.5:c.1667G>A	p.Gly556Asp	p.G556D	ENST00000264657	NM_139276.2	556	gGc/gAc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40871147	40871147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	116	378	0	ENST00000428826.2:c.743G>T	p.Gly248Val	p.G248V	ENST00000428826		248	gGt/gTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244783	41244783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	143	655	0	ENST00000357654.3:c.2765C>T	p.Thr922Ile	p.T922I	ENST00000357654	NM_007294.3	922	aCa/aTa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47679300	47679300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	151	445	0	ENST00000347630.2:c.907G>A	p.Ala303Thr	p.A303T	ENST00000347630	NM_001007230.1	303	Gca/Aca																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752428	55752428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	290	696	1	ENST00000284073.2:c.886G>T	p.Gly296Trp	p.G296W	ENST00000284073	NM_138962.2	296	Ggg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435750	56435750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	101	306	0	ENST00000407977.2:c.1387G>A	p.Ala463Thr	p.A463T	ENST00000407977		463	Gcc/Acc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885886	59885886	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	144	458	0	ENST00000259008.2:c.860A>G	p.Glu287Gly	p.E287G	ENST00000259008	NM_032043.2	287	gAg/gGg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533078	63533078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	161	438	2	ENST00000307078.5:c.1816C>A	p.Leu606Met	p.L606M	ENST00000307078	NM_004655.3	606	Ctg/Atg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78866595	78866595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	179	518	0	ENST00000306801.3:c.2168A>G	p.Tyr723Cys	p.Y723C	ENST00000306801	NM_020761.2	723	tAt/tGt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897381	78897381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	160	568	0	ENST00000306801.3:c.2716C>T	p.Pro906Ser	p.P906S	ENST00000306801	NM_020761.2	906	Ccg/Tcg																																																																														
YES1	7525	MSKCC	GRCh37	18	743376	743376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	119	384	0	ENST00000314574.4:c.764G>A	p.Cys255Tyr	p.C255Y	ENST00000314574	NM_005433.3	255	tGt/tAt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45391457	45391457	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	99	379	0	ENST00000262160.6:c.703C>T	p.Gln235Ter	p.Q235*	ENST00000262160	NM_005901.5	235	Caa/Taa																																																																														
BCL2	596	MSKCC	GRCh37	18	60795881	60795881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	113	400	2	ENST00000333681.4:c.697G>A	p.Gly233Ser	p.G233S	ENST00000333681		233	Ggt/Agt																																																																														
INSR	3643	MSKCC	GRCh37	19	7163181	7163181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	153	476	0	ENST00000302850.5:c.1891G>A	p.Val631Met	p.V631M	ENST00000302850	NM_000208.2	631	Gtg/Atg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10244964	10244964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	133	461	0	ENST00000340748.4:c.4745C>T	p.Pro1582Leu	p.P1582L	ENST00000340748		1582	cCg/cTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096004	11096004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	223	676	0	ENST00000344626.4:c.278T>C	p.Met93Thr	p.M93T	ENST00000344626	NM_003072.3	93	aTg/aCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285170	15285170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	285	660	0	ENST00000263388.2:c.4445G>A	p.Gly1482Asp	p.G1482D	ENST00000263388	NM_000435.2	1482	gGc/gAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353918	15353918	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	91	283	0	ENST00000263377.2:c.2962C>T	p.Gln988Ter	p.Q988*	ENST00000263377	NM_058243.2	988	Cag/Tag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375468	15375468	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	202	493	0	ENST00000263377.2:c.959A>T	p.Gln320Leu	p.Q320L	ENST00000263377	NM_058243.2	320	cAg/cTg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17387368	17387368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	319	756	1	ENST00000359435.4:c.634C>T	p.Arg212Cys	p.R212C	ENST00000359435	NM_001033549.1	212	Cgc/Tgc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279310	18279310	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	204	440	0	ENST00000222254.8:c.1762C>T	p.Gln588Ter	p.Q588*	ENST00000222254	NM_005027.3	588	Cag/Tag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18972962	18972962	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	87	399	0	ENST00000262803.5:c.2600+1G>A		p.X867_splice	ENST00000262803	NM_002911.3	867																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36214040	36214040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	224	635	1	ENST00000222270.7:c.2866C>A	p.His956Asn	p.H956N	ENST00000222270	NM_014727.1	956	Cat/Aat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223145	36223145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1249	264	731	0	ENST00000222270.7:c.5695C>A	p.Pro1899Thr	p.P1899T	ENST00000222270	NM_014727.1	1899	Ccc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223858	36223858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	228	663	4	ENST00000222270.7:c.6413del	p.Pro2138ArgfsTer15	p.P2138Rfs*15	ENST00000222270	NM_014727.1	2136	ctC/ct																																																																														
AXL	558	MSKCC	GRCh37	19	41743987	41743987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	196	654	0	ENST00000301178.4:c.922C>T	p.Arg308Cys	p.R308C	ENST00000301178	NM_021913.4	308	Cgc/Tgc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791767	42791767	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	182	506	0	ENST00000575354.2:c.653T>A	p.Val218Asp	p.V218D	ENST00000575354	NM_015125.3	218	gTc/gAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42792032	42792032	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	149	424	0	ENST00000575354.2:c.836C>A	p.Ser279Ter	p.S279*	ENST00000575354	NM_015125.3	279	tCa/tAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42795271	42795271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	137	433	0	ENST00000575354.2:c.2351G>T	p.Gly784Val	p.G784V	ENST00000575354	NM_015125.3	784	gGg/gTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905485	50905485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	264	648	1	ENST00000440232.2:c.613G>A	p.Gly205Ser	p.G205S	ENST00000440232	NM_002691.3	205	Ggc/Agc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467172	25467172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	135	398	0	ENST00000264709.3:c.1703G>T	p.Gly568Val	p.G568V	ENST00000264709	NM_175629.2	568	gGg/gTg																																																																														
ALK	238	MSKCC	GRCh37	2	29416551	29416551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	146	402	0	ENST00000389048.3:c.4402G>T	p.Gly1468Trp	p.G1468W	ENST00000389048	NM_004304.4	1468	Ggg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	29455170	29455170	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	133	309	0	ENST00000389048.3:c.2632G>T	p.Gly878Cys	p.G878C	ENST00000389048	NM_004304.4	878	Ggt/Tgt																																																																														
ALK	238	MSKCC	GRCh37	2	30143282	30143282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	224	478	0	ENST00000389048.3:c.244G>A	p.Ala82Thr	p.A82T	ENST00000389048	NM_004304.4	82	Gct/Act																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213027	39213027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	183	608	0	ENST00000402219.2:c.3940C>T	p.His1314Tyr	p.H1314Y	ENST00000402219	NM_005633.3	1314	Cac/Tac																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224123	39224123	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	119	550	0	ENST00000402219.2:c.3021T>A	p.Asp1007Glu	p.D1007E	ENST00000402219	NM_005633.3	1007	gaT/gaA																																																																														
MSH2	4436	MSKCC	GRCh37	2	47635563	47635563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	100	323	0	ENST00000233146.2:c.235G>A	p.Val79Met	p.V79M	ENST00000233146	NM_000251.2	79	Gtg/Atg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026461	48026461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	97	317	0	ENST00000234420.5:c.1339C>A	p.Leu447Met	p.L447M	ENST00000234420	NM_000179.2	447	Ctg/Atg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027503	48027503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	86	313	0	ENST00000234420.5:c.2381C>T	p.Ala794Val	p.A794V	ENST00000234420	NM_000179.2	794	gCc/gTc																																																																														
REL	5966	MSKCC	GRCh37	2	61149159	61149159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	90	355	2	ENST00000295025.8:c.1349C>A	p.Pro450His	p.P450H	ENST00000295025	NM_002908.2	450	cCt/cAt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182222	99182222	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	181	432	0	ENST00000074304.5:c.2287G>T	p.Gly763Ter	p.G763*	ENST00000074304	NM_001134224.1	763	Gga/Tga																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128036768	128036768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	137	484	0	ENST00000285398.2:c.1711T>C	p.Tyr571His	p.Y571H	ENST00000285398	NM_000122.1	571	Tat/Cat																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044389	128044389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	152	449	1	ENST00000285398.2:c.1232C>A	p.Ser411Tyr	p.S411Y	ENST00000285398	NM_000122.1	411	tCc/tAc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190670375	190670375	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	85	324	0	ENST00000441310.2:c.316-3C>T		p.X106_splice	ENST00000441310	NM_000534.4	106																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198257776	198257776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	136	486	0	ENST00000335508.6:c.3676G>A	p.Val1226Ile	p.V1226I	ENST00000335508	NM_012433.2	1226	Gta/Ata																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198270118	198270118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	124	494	0	ENST00000335508.6:c.1318G>A	p.Gly440Ser	p.G440S	ENST00000335508	NM_012433.2	440	Ggt/Agt																																																																														
CASP8	841	MSKCC	GRCh37	2	202131288	202131288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	133	466	0	ENST00000358485.4:c.256C>A	p.Leu86Met	p.L86M	ENST00000358485	NM_001080125.1	86	Ctg/Atg																																																																														
INHA	3623	MSKCC	GRCh37	2	220440213	220440213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	181	649	0	ENST00000243786.2:c.1066C>T	p.Pro356Ser	p.P356S	ENST00000243786	NM_002191.3	356	Ccc/Tcc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225449680	225449680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	115	335	0	ENST00000264414.4:c.47T>C	p.Met16Thr	p.M16T	ENST00000264414	NM_003590.4	16	aTg/aCg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660775	227660775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	136	466	0	ENST00000305123.5:c.2680G>A	p.Gly894Arg	p.G894R	ENST00000305123	NM_005544.2	894	Ggg/Agg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525075	9525075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	158	544	0	ENST00000353224.5:c.1810G>A	p.Val604Ile	p.V604I	ENST00000353224	NM_177990.2	604	Gtt/Att																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546891	9546891	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	106	269	0	ENST00000353224.5:c.1131C>A	p.Tyr377Ter	p.Y377*	ENST00000353224	NM_177990.2	377	taC/taA																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017752	31017752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	115	382	0	ENST00000375687.4:c.614G>A	p.Ser205Asn	p.S205N	ENST00000375687	NM_015338.5	205	aGc/aAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024131	31024131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	172	557	0	ENST00000375687.4:c.3616G>A	p.Ala1206Thr	p.A1206T	ENST00000375687	NM_015338.5	1206	Gca/Aca																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31385096	31385096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	101	288	0	ENST00000328111.2:c.1481G>A	p.Ser494Asn	p.S494N	ENST00000328111	NM_006892.3	494	aGc/aAc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321753	62321753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	152	470	0	ENST00000508582.2:c.2444G>A	p.Ser815Asn	p.S815N	ENST00000508582		815	aGt/aAt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259256	36259256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	111	340	0	ENST00000300305.3:c.235G>A	p.Val79Met	p.V79M	ENST00000300305		79	Gtg/Atg																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127184	22127184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	90	434	0	ENST00000215832.6:c.944A>G	p.Gln315Arg	p.Q315R	ENST00000215832	NM_002745.4	315	cAg/cGg																																																																														
EP300	2033	MSKCC	GRCh37	22	41513478	41513478	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	151	500	1	ENST00000263253.7:c.382C>T	p.Gln128Ter	p.Q128*	ENST00000263253	NM_001429.3	128	Cag/Tag																																																																														
EP300	2033	MSKCC	GRCh37	22	41554433	41554433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	94	300	2	ENST00000263253.7:c.3519G>T	p.Gln1173His	p.Q1173H	ENST00000263253	NM_001429.3	1173	caG/caT																																																																														
EP300	2033	MSKCC	GRCh37	22	41573393	41573393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	206	538	0	ENST00000263253.7:c.5678C>T	p.Ala1893Val	p.A1893V	ENST00000263253	NM_001429.3	1893	gCt/gTt																																																																														
EP300	2033	MSKCC	GRCh37	22	41574595	41574595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	248	774	1	ENST00000263253.7:c.6880C>A	p.Leu2294Ile	p.L2294I	ENST00000263253	NM_001429.3	2294	Cta/Ata																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641703	12641703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	160	359	0	ENST00000251849.4:c.938C>T	p.Pro313Leu	p.P313L	ENST00000251849	NM_002880.3	313	cCa/cTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165574	47165574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	86	257	0	ENST00000409792.3:c.552C>A	p.Asp184Glu	p.D184E	ENST00000409792	NM_014159.6	184	gaC/gaA																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936543	49936543	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs139493185		P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	171	537	1	ENST00000296474.3:c.1384G>T	p.Ala462Ser	p.A462S	ENST00000296474	NM_002447.2	462	Gca/Tca																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72842086	72842086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	120	338	0	ENST00000325599.8:c.1162G>A	p.Val388Met	p.V388M	ENST00000325599	NM_018130.2	388	Gtg/Atg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967232	134967232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	136	460	0	ENST00000398015.3:c.2571G>A	p.Met857Ile	p.M857I	ENST00000398015	NM_004441.4	857	atG/atA																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374298	138374298	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	144	482	0	ENST00000289153.2:c.3146T>G	p.Leu1049Arg	p.L1049R	ENST00000289153	NM_006219.2	1049	cTc/cGc																																																																														
ATR	545	MSKCC	GRCh37	3	142215329	142215329	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	143	421	1	ENST00000350721.4:c.5772G>A	p.Trp1924Ter	p.W1924*	ENST00000350721	NM_001184.3	1924	tgG/tgA																																																																														
ATR	545	MSKCC	GRCh37	3	142222210	142222210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	165	423	0	ENST00000350721.4:c.5282C>T	p.Ala1761Val	p.A1761V	ENST00000350721	NM_001184.3	1761	gCt/gTt																																																																														
ATR	545	MSKCC	GRCh37	3	142281239	142281239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	115	483	1	ENST00000350721.4:c.1005G>A	p.Met335Ile	p.M335I	ENST00000350721	NM_001184.3	335	atG/atA																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149245623	149245623	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	195	490	0	ENST00000360632.3:c.905G>T	p.Gly302Val	p.G302V	ENST00000360632	NM_015472.4	302	gGa/gTa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190816	185190816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	193	625	0	ENST00000265026.3:c.1697C>T	p.Ala566Val	p.A566V	ENST00000265026	NM_004721.4	566	gCa/gTa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191400	185191400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	228	590	0	ENST00000265026.3:c.2281C>T	p.Pro761Ser	p.P761S	ENST00000265026	NM_004721.4	761	Cca/Tca																																																																														
TP63	8626	MSKCC	GRCh37	3	189586416	189586416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	92	326	1	ENST00000264731.3:c.1040G>A	p.Cys347Tyr	p.C347Y	ENST00000264731	NM_003722.4	347	tGc/tAc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1956990	1956990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	133	416	0	ENST00000382891.5:c.2441C>T	p.Thr814Ile	p.T814I	ENST00000382891	NM_133335.3	814	aCt/aTt																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1961301	1961301	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	180	539	1	ENST00000382891.5:c.3089C>A	p.Ser1030Ter	p.S1030*	ENST00000382891	NM_133335.3	1030	tCg/tAg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55136840	55136840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	132	422	0	ENST00000257290.5:c.1162G>A	p.Asp388Asn	p.D388N	ENST00000257290	NM_006206.4	388	Gac/Aac																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152033	55152033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	118	385	0	ENST00000257290.5:c.2465G>A	p.Arg822His	p.R822H	ENST00000257290	NM_006206.4	822	cGc/cAc																																																																														
KDR	3791	MSKCC	GRCh37	4	55976858	55976858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	134	581	0	ENST00000263923.4:c.1054G>A	p.Ala352Thr	p.A352T	ENST00000263923	NM_002253.2	352	Gcg/Acg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361120	66361120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	78	354	0	ENST00000273854.3:c.1052C>T	p.Thr351Ile	p.T351I	ENST00000273854	NM_004439.5	351	aCa/aTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247186	153247186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	62	339	0	ENST00000281708.4:c.1616G>A	p.Gly539Glu	p.G539E	ENST00000281708	NM_033632.3	539	gGg/gAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509952	187509952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	90	274	1	ENST00000441802.2:c.13561C>T	p.Pro4521Ser	p.P4521S	ENST00000441802	NM_005245.3	4521	Cca/Tca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524080	187524080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	147	528	0	ENST00000441802.2:c.11459G>A	p.Ser3820Asn	p.S3820N	ENST00000441802	NM_005245.3	3820	aGc/aAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540946	187540946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	84	253	1	ENST00000441802.2:c.6794C>T	p.Ala2265Val	p.A2265V	ENST00000441802	NM_005245.3	2265	gCt/gTt																																																																														
SDHA	6389	MSKCC	GRCh37	5	235266	235266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	129	342	0	ENST00000264932.6:c.1072G>A	p.Gly358Ser	p.G358S	ENST00000264932	NM_004168.2	358	Ggc/Agc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294470	1294470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	205	505	0	ENST00000310581.5:c.531G>C	p.Gln177His	p.Q177H	ENST00000310581	NM_198253.2	177	caG/caC																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31424566	31424566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	181	543	0	ENST00000344624.3:c.3229G>A	p.Val1077Ile	p.V1077I	ENST00000344624		1077	Gtc/Atc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31431746	31431746	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	127	477	0	ENST00000344624.3:c.3082C>G	p.Pro1028Ala	p.P1028A	ENST00000344624		1028	Cct/Gct																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38946570	38946570	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	64	347	0	ENST00000357387.3:c.4399G>T	p.Gly1467Cys	p.G1467C	ENST00000357387	NM_152756.3	1467	Ggt/Tgt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178673	56178675	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	51	178	0	ENST00000399503.3:c.3651_3653delCAT	p.Ile1219del	p.I1219del	ENST00000399503	NM_005921.1	1216	ATC/-																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56184096	56184096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	116	387	0	ENST00000399503.3:c.4301G>A	p.Ser1434Asn	p.S1434N	ENST00000399503	NM_005921.1	1434	aGt/aAt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576831	67576831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	112	351	0	ENST00000274335.5:c.913C>T	p.Pro305Ser	p.P305S	ENST00000274335		305	Cca/Tca																																																																														
MSH3	4437	MSKCC	GRCh37	5	80024730	80024730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	124	632	0	ENST00000265081.6:c.1514C>A	p.Ala505Asp	p.A505D	ENST00000265081	NM_002439.4	505	gCc/gAc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685247	86685247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	91	216	0	ENST00000274376.6:c.2963G>A	p.Arg988Lys	p.R988K	ENST00000274376	NM_002890.2	988	aGa/aAa																																																																														
APC	324	MSKCC	GRCh37	5	112177040	112177040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	87	637	0	ENST00000257430.4:c.5749C>T	p.Pro1917Ser	p.P1917S	ENST00000257430	NM_000038.5	1917	Cca/Tca																																																																														
APC	324	MSKCC	GRCh37	5	112177853	112177853	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	140	385	0	ENST00000257430.4:c.6562A>G	p.Ile2188Val	p.I2188V	ENST00000257430	NM_000038.5	2188	Atc/Gtc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149433735	149433735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	108	433	0	ENST00000286301.3:c.2816G>T	p.Ser939Ile	p.S939I	ENST00000286301	NM_005211.3	939	aGc/aTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449511	149449511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	150	459	0	ENST00000286301.3:c.1435C>T	p.His479Tyr	p.H479Y	ENST00000286301	NM_005211.3	479	Cac/Tac																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149457745	149457745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	157	428	0	ENST00000286301.3:c.659C>T	p.Ala220Val	p.A220V	ENST00000286301	NM_005211.3	220	gCc/gTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638222	176638222	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189716582		P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	217	530	0	ENST00000439151.2:c.2822G>A	p.Arg941His	p.R941H	ENST00000439151	NM_022455.4	941	cGt/cAt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176694568	176694568	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	90	260	0	ENST00000439151.2:c.5152A>G	p.Ser1718Gly	p.S1718G	ENST00000439151	NM_022455.4	1718	Agc/Ggc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707684	176707684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	185	358	2	ENST00000439151.2:c.5741G>A	p.Arg1914His	p.R1914H	ENST00000439151	NM_022455.4	1914	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709483	176709483	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	91	280	0	ENST00000439151.2:c.5910G>C	p.Glu1970Asp	p.E1970D	ENST00000439151	NM_022455.4	1970	gaG/gaC																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047875	180047875	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	176	574	1	ENST00000261937.6:c.2299+1G>A		p.X767_splice	ENST00000261937	NM_182925.4	767																																																																															
FLT4	2324	MSKCC	GRCh37	5	180048886	180048886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	186	535	0	ENST00000261937.6:c.1676C>T	p.Thr559Ile	p.T559I	ENST00000261937	NM_182925.4	559	aCc/aTc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052877	180052877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	163	572	0	ENST00000261937.6:c.1413G>T	p.Gln471His	p.Q471H	ENST00000261937	NM_182925.4	471	caG/caT																																																																														
IRF4	3662	MSKCC	GRCh37	6	394879	394879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	132	392	0	ENST00000380956.4:c.275C>T	p.Thr92Ile	p.T92I	ENST00000380956	NM_001195286.1	92	aCc/aTc																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020901	26020901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	25	219	0	ENST00000357647.3:c.184C>T	p.Leu62Phe	p.L62F	ENST00000357647	NM_003529.2	62	Ctt/Ttt																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839760	27839760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	122	372	1	ENST00000328488.2:c.334G>A	p.Ala112Thr	p.A112T	ENST00000328488	NM_003533.2	112	Gcc/Acc																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858228	27858228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	153	337	0	ENST00000359303.2:c.343G>A	p.Ala115Thr	p.A115T	ENST00000359303	NM_003535.2	115	Gcc/Acc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912369	29912369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	108	379	0	ENST00000376809.5:c.988G>T	p.Val330Leu	p.V330L	ENST00000376809	NM_002116.7	330	Gtg/Ttg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672837	30672837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	178	487	0	ENST00000376406.3:c.4123C>T	p.Pro1375Ser	p.P1375S	ENST00000376406	NM_014641.2	1375	Cct/Tct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187552	32187552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	150	359	1	ENST00000375023.3:c.1327C>A	p.Pro443Thr	p.P443T	ENST00000375023	NM_004557.3	443	Cca/Aca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32189048	32189048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	131	460	0	ENST00000375023.3:c.506G>T	p.Gly169Val	p.G169V	ENST00000375023	NM_004557.3	169	gGg/gTg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818728	32818728	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	142	429	0	ENST00000354258.4:c.1223G>A	p.Trp408Ter	p.W408*	ENST00000354258	NM_000593.5	408	tGg/tAg																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793577	89793577	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	93	385	0	ENST00000336032.3:c.646A>G	p.Ser216Gly	p.S216G	ENST00000336032	NM_006813.2	216	Agc/Ggc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93973636	93973636	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	115	370	0	ENST00000369303.4:c.1743-3A>G		p.X581_splice	ENST00000369303	NM_004440.3	581																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94120398	94120398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	29	327	0	ENST00000369303.4:c.653C>T	p.Thr218Ile	p.T218I	ENST00000369303	NM_004440.3	218	aCa/aTa																																																																														
FYN	2534	MSKCC	GRCh37	6	112020732	112020732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	175	424	0	ENST00000368678.4:c.839C>T	p.Ala280Val	p.A280V	ENST00000368678		280	gCt/gTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631445	117631445	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs190667369		P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	71	291	0	ENST00000368508.3:c.6234-1G>A		p.X2078_splice	ENST00000368508	NM_002944.2	2078																																																																															
ROS1	6098	MSKCC	GRCh37	6	117677989	117677989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	116	404	0	ENST00000368508.3:c.3944C>A	p.Pro1315His	p.P1315H	ENST00000368508	NM_002944.2	1315	cCc/cAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681024	117681024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	99	438	0	ENST00000368508.3:c.3596C>A	p.Ala1199Asp	p.A1199D	ENST00000368508	NM_002944.2	1199	gCt/gAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708967	117708967	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	131	401	0	ENST00000368508.3:c.1990T>C	p.Ser664Pro	p.S664P	ENST00000368508	NM_002944.2	664	Tca/Cca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710605	117710605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	95	266	0	ENST00000368508.3:c.1667C>T	p.Pro556Leu	p.P556L	ENST00000368508	NM_002944.2	556	cCt/cTt																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196058	138196058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	105	237	0	ENST00000237289.4:c.372G>T	p.Lys124Asn	p.K124N	ENST00000237289	NM_001270507.1	124	aaG/aaT																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199967	138199967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	112	277	1	ENST00000237289.4:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000237289	NM_001270507.1	462	cCg/cTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517417	157517417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	156	456	0	ENST00000346085.5:c.3981G>T	p.Gln1327His	p.Q1327H	ENST00000346085	NM_020732.3	1327	caG/caT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959220	2959220	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	69	468	1	ENST00000396946.4:c.2296G>T	p.Glu766Ter	p.E766*	ENST00000396946	NM_032415.4	766	Gag/Tag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367326	50367326	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	121	257	0	ENST00000331340.3:c.133C>T	p.Gln45Ter	p.Q45*	ENST00000331340	NM_006060.4	45	Caa/Taa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468320	50468320	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	163	428	0	ENST00000331340.3:c.1555A>T	p.Ser519Cys	p.S519C	ENST00000331340	NM_006060.4	519	Agc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55219028	55219028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	119	321	0	ENST00000275493.2:c.601G>T	p.Gly201Cys	p.G201C	ENST00000275493	NM_005228.3	201	Ggt/Tgt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508456	106508456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	36	115	0	ENST00000359195.3:c.450C>A	p.Phe150Leu	p.F150L	ENST00000359195	NM_002649.2	150	ttC/ttA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545781	106545781	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	83	478	2	ENST00000359195.3:c.3258G>A	p.Trp1086Ter	p.W1086*	ENST00000359195	NM_002649.2	1086	tgG/tgA																																																																														
SMO	6608	MSKCC	GRCh37	7	128829156	128829156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	46	99	1	ENST00000249373.3:c.164C>T	p.Thr55Ile	p.T55I	ENST00000249373	NM_005631.4	55	aCt/aTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140439654	140439654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	72	311	0	ENST00000288602.6:c.2085G>T	p.Glu695Asp	p.E695D	ENST00000288602	NM_004333.4	695	gaG/gaT																																																																														
BRAF	673	MSKCC	GRCh37	7	140476857	140476857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	107	417	0	ENST00000288602.6:c.1549A>G	p.Met517Val	p.M517V	ENST00000288602	NM_004333.4	517	Atg/Gtg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845739	151845739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	177	495	0	ENST00000262189.6:c.13273G>A	p.Asp4425Asn	p.D4425N	ENST00000262189	NM_170606.2	4425	Gat/Aat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151851105	151851105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	51	225	0	ENST00000262189.6:c.12266C>T	p.Thr4089Ile	p.T4089I	ENST00000262189	NM_170606.2	4089	aCa/aTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878491	151878491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	150	396	0	ENST00000262189.6:c.6454G>A	p.Ala2152Thr	p.A2152T	ENST00000262189	NM_170606.2	2152	Gct/Act																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879310	151879310	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	90	305	0	ENST00000262189.6:c.5635C>G	p.Pro1879Ala	p.P1879A	ENST00000262189	NM_170606.2	1879	Ccg/Gcg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884523	151884523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	80	298	0	ENST00000262189.6:c.4832C>A	p.Pro1611His	p.P1611H	ENST00000262189	NM_170606.2	1611	cCt/cAt																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38146217	38146217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	154	531	0	ENST00000317025.8:c.3289C>A	p.Arg1097Ser	p.R1097S	ENST00000317025	NM_023034.1	1097	Cgc/Agc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370899	55370900	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	253	575	0	ENST00000297316.4:c.202dup	p.Ile68AsnfsTer13	p.I68Nfs*13	ENST00000297316	NM_022454.3	67	-/A																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372239	55372239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	133	371	1	ENST00000297316.4:c.929G>A	p.Gly310Asp	p.G310D	ENST00000297316	NM_022454.3	310	gGc/gAc																																																																														
NBN	4683	MSKCC	GRCh37	8	90990458	90990458	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	86	396	0	ENST00000265433.3:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000265433	NM_002485.4	192	Caa/Taa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117869656	117869656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	121	564	0	ENST00000297338.2:c.538G>A	p.Asp180Asn	p.D180N	ENST00000297338	NM_006265.2	180	Gac/Aac																																																																														
AGO2	27161	MSKCC	GRCh37	8	141559398	141559398	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	155	404	0	ENST00000220592.5:c.1404-1G>T		p.X468_splice	ENST00000220592	NM_012154.3	468																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8404545	8404545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	53	206	0	ENST00000356435.5:c.4202C>T	p.Ala1401Val	p.A1401V	ENST00000356435		1401	gCt/gTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404619	8404619	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	23	253	0	ENST00000356435.5:c.4128C>G	p.Asn1376Lys	p.N1376K	ENST00000356435		1376	aaC/aaG																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517851	8517851	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	62	239	0	ENST00000356435.5:c.1540G>T	p.Gly514Ter	p.G514*	ENST00000356435		514	Gga/Tga																																																																														
TEK	7010	MSKCC	GRCh37	9	27197433	27197433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	166	658	0	ENST00000380036.4:c.1745C>T	p.Ser582Phe	p.S582F	ENST00000380036	NM_000459.3	582	tCt/tTt																																																																														
TEK	7010	MSKCC	GRCh37	9	27220142	27220142	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	117	376	0	ENST00000380036.4:c.3199G>A	p.Val1067Met	p.V1067M	ENST00000380036	NM_000459.3	1067	Gtg/Atg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966553	36966553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	119	371	1	ENST00000358127.4:c.773C>A	p.Pro258His	p.P258H	ENST00000358127	NM_001280556.1	258	cCc/cAc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342574	87342574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	116	382	0	ENST00000277120.3:c.859C>A	p.Pro287Thr	p.P287T	ENST00000277120		287	Cca/Aca																																																																														
SYK	6850	MSKCC	GRCh37	9	93606368	93606368	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	108	464	0	ENST00000375746.1:c.188A>G	p.His63Arg	p.H63R	ENST00000375746	NM_001174167.1	63	cAc/cGc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249442	110249442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	266	710	0	ENST00000374672.4:c.1131G>T	p.Glu377Asp	p.E377D	ENST00000374672	NM_004235.4	377	gaG/gaT																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250097	110250097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	157	458	0	ENST00000374672.4:c.578T>C	p.Val193Ala	p.V193A	ENST00000374672	NM_004235.4	193	gTg/gCg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128201209	128201209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	150	459	2	ENST00000265960.3:c.1526C>T	p.Thr509Met	p.T509M	ENST00000265960	NM_001006617.1	509	aCg/aTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781182	135781182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	169	474	0	ENST00000298552.3:c.1783G>T	p.Gly595Cys	p.G595C	ENST00000298552	NM_001162426.1	595	Ggc/Tgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391802	139391802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	143	393	0	ENST00000277541.6:c.6389G>A	p.Gly2130Glu	p.G2130E	ENST00000277541	NM_017617.3	2130	gGg/gAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395300	139395300	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	58	368	0	ENST00000277541.6:c.5639-1G>T		p.X1880_splice	ENST00000277541	NM_017617.3	1880																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399168	139399168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	165	437	2	ENST00000277541.6:c.4975G>T	p.Gly1659Cys	p.G1659C	ENST00000277541	NM_017617.3	1659	Ggt/Tgt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400101	139400101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	206	664	0	ENST00000277541.6:c.4247G>A	p.Cys1416Tyr	p.C1416Y	ENST00000277541	NM_017617.3	1416	tGc/tAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401020	139401020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	203	486	3	ENST00000277541.6:c.3973G>A	p.Ala1325Thr	p.A1325T	ENST00000277541	NM_017617.3	1325	Gcc/Acc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412280	139412280	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	183	538	0	ENST00000277541.6:c.1365G>C	p.Glu455Asp	p.E455D	ENST00000277541	NM_017617.3	455	gaG/gaC																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928905	44928905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	98	377	0	ENST00000377967.4:c.2005C>T	p.Leu669Phe	p.L669F	ENST00000377967	NM_021140.2	669	Ctc/Ttc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228321	53228321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	139	540	0	ENST00000375401.3:c.2081G>A	p.Arg694Gln	p.R694Q	ENST00000375401	NM_004187.3	694	cGa/cAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53230894	53230894	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	150	456	0	ENST00000375401.3:c.1899C>A	p.Tyr633Ter	p.Y633*	ENST00000375401	NM_004187.3	633	taC/taA																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53253984	53253984	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	152	485	0	ENST00000375401.3:c.88T>C	p.Tyr30His	p.Y30H	ENST00000375401	NM_004187.3	30	Tac/Cac																																																																														
AR	367	MSKCC	GRCh37	X	66765836	66765836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	212	750	0	ENST00000374690.3:c.848C>A	p.Pro283His	p.P283H	ENST00000374690	NM_000044.3	283	cCt/cAt																																																																														
AR	367	MSKCC	GRCh37	X	66931342	66931342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	142	477	0	ENST00000374690.3:c.1984G>T	p.Val662Leu	p.V662L	ENST00000374690	NM_000044.3	662	Gtg/Ttg																																																																														
MED12	9968	MSKCC	GRCh37	X	70340924	70340924	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	152	396	0	ENST00000374080.3:c.657A>G	p.Ile219Met	p.I219M	ENST00000374080		219	atA/atG																																																																														
ATRX	546	MSKCC	GRCh37	X	76829719	76829719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	116	507	0	ENST00000373344.5:c.6322G>A	p.Val2108Met	p.V2108M	ENST00000373344	NM_000489.3	2108	Gtg/Atg																																																																														
ATRX	546	MSKCC	GRCh37	X	76972719	76972719	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	76	363	0	ENST00000373344.5:c.22G>A	p.Glu8Lys	p.E8K	ENST00000373344	NM_000489.3	8	Gaa/Aaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123196759	123196759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	79	356	0	ENST00000218089.9:c.1646C>T	p.Thr549Ile	p.T549I	ENST00000218089	NM_001042749.1	549	aCa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	154	849	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0018177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	25	433	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0018177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	25	433	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0018177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	28	453	3				ENST00000310581	NM_198253.2																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149439282	149439282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	51	671	1	ENST00000286301.3:c.2113G>A	p.Glu705Lys	p.E705K	ENST00000286301	NM_005211.3	705	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0018177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	25	433	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412372	139412372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	42	492	3	ENST00000277541.6:c.1273C>T	p.His425Tyr	p.H425Y	ENST00000277541	NM_017617.3	425	Cat/Tat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	53	640	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0018185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	191	807	0	ENST00000269305.4:c.993+1G>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	108	606	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	108	606	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	108	606	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286244	66286244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	48	716	2	ENST00000273854.3:c.1442C>T	p.Ala481Val	p.A481V	ENST00000273854	NM_004439.5	481	gCa/gTa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237793	16237794	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	447	388	1	ENST00000375759.3:c.1240_1241delinsTT	p.Pro414Leu	p.P414L	ENST00000375759	NM_015001.2	414	CCa/TTa																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771483	112771484	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	655	586	1	ENST00000369452.4:c.1656_1657delinsTT	p.Leu553Phe	p.L553F	ENST00000369452	NM_007373.3	552	ccACtc/ccTTtc																																																																														
WT1	7490	MSKCC	GRCh37	11	32417910	32417910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	678	522	0	ENST00000332351.3:c.1142C>T	p.Ser381Leu	p.S381L	ENST00000332351	NM_024426.4	381	tCg/tTg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572666	64572666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	450	373	1	ENST00000337652.1:c.1205C>T	p.Thr402Ile	p.T402I	ENST00000337652	NM_130803.2	402	aCc/aTc																																																																														
PGR	5241	MSKCC	GRCh37	11	100996810	100996810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	723	577	0	ENST00000325455.5:c.1717G>A	p.Glu573Lys	p.E573K	ENST00000325455	NM_001202474.3	573	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343372	118343372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	466	353	0	ENST00000534358.1:c.1498C>T	p.Pro500Ser	p.P500S	ENST00000534358	NM_005933.3	500	Cct/Tct																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022493	12022493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	694	725	0	ENST00000396373.4:c.599C>T	p.Pro200Leu	p.P200L	ENST00000396373	NM_001987.4	200	cCc/cTc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037394	12037395	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	364	622	1	ENST00000396373.4:c.1025_1026delinsAA	p.Trp342Ter	p.W342*	ENST00000396373	NM_001987.4	342	tGG/tAA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658386	18658386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	431	355	0	ENST00000266497.5:c.3191G>A	p.Gly1064Glu	p.G1064E	ENST00000266497		1064	gGg/gAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444881	49444881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	786	559	0	ENST00000301067.7:c.2585C>T	p.Pro862Leu	p.P862L	ENST00000301067	NM_003482.3	862	cCt/cTt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56494935	56494935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	580	417	2	ENST00000267101.3:c.3292G>A	p.Glu1098Lys	p.E1098K	ENST00000267101	NM_001982.3	1098	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133241038	133241038	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	579	433	2	ENST00000320574.5:c.2479T>G	p.Tyr827Asp	p.Y827D	ENST00000320574	NM_006231.2	827	Tac/Gac																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549364	21549364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	451	369	0	ENST00000382592.4:c.2912C>T	p.Pro971Leu	p.P971L	ENST00000382592	NM_014572.2	971	cCc/cTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001360	29001360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	478	368	1	ENST00000282397.4:c.1372G>A	p.Gly458Ser	p.G458S	ENST00000282397	NM_002019.4	458	Ggt/Agt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81558928	81558928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	599	511	1	ENST00000298171.2:c.521G>A	p.Gly174Glu	p.G174E	ENST00000298171	NM_000369.2	174	gGa/gAa																																																																														
RAD51	5888	MSKCC	GRCh37	15	40998433	40998434	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	746	683	3	ENST00000267868.3:c.284_285delinsAA	p.Arg95Lys	p.R95K	ENST00000267868	NM_002875.4	95	aGG/aAA																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701930	43701931	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	284	239	0	ENST00000382044.4:c.5314_5315delinsAC	p.Glu1772Thr	p.E1772T	ENST00000382044	NM_001141980.1	1772	GAa/ACa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707876	43707876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	769	622	0	ENST00000382044.4:c.5005C>T	p.Leu1669Phe	p.L1669F	ENST00000382044	NM_001141980.1	1669	Ctc/Ttc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712773	43712773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	713	676	0	ENST00000382044.4:c.4411C>T	p.Pro1471Ser	p.P1471S	ENST00000382044	NM_001141980.1	1471	Cct/Tct																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678572	88678572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	340	275	1	ENST00000360948.2:c.964G>A	p.Glu322Lys	p.E322K	ENST00000360948	NM_001012338.2	322	Gag/Aag																																																																														
BLM	641	MSKCC	GRCh37	15	91290720	91290720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs139282091		P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	520	436	0	ENST00000355112.3:c.98C>T	p.Ser33Leu	p.S33L	ENST00000355112	NM_000057.2	33	tCa/tTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779163	3779163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	409	362	0	ENST00000262367.5:c.5885T>C	p.Ile1962Thr	p.I1962T	ENST00000262367	NM_004380.2	1962	aTc/aCc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23649399	23649399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	524	377	1	ENST00000261584.4:c.100C>T	p.Arg34Cys	p.R34C	ENST00000261584	NM_024675.3	34	Cgc/Tgc																																																																														
CBFB	865	MSKCC	GRCh37	16	67063356	67063356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	542	358	0	ENST00000412916.2:c.46G>A	p.Glu16Lys	p.E16K	ENST00000412916		16	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944264	81944264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	756	599	0	ENST00000359376.3:c.1873G>A	p.Ala625Thr	p.A625T	ENST00000359376	NM_002661.3	625	Gcc/Acc																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	737	589	3	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
RARA	5914	MSKCC	GRCh37	17	38510600	38510601	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1507	671	597	0	ENST00000254066.5:c.854_855delinsTT	p.Thr285Ile	p.T285I	ENST00000254066	NM_000964.3	285	aCC/aTT																																																																														
EZH1	2145	MSKCC	GRCh37	17	40858195	40858195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1574	672	555	1	ENST00000428826.2:c.1669C>T	p.Arg557Cys	p.R557C	ENST00000428826		557	Cgt/Tgt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436055	56436055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	717	245	0	ENST00000407977.2:c.1082C>T	p.Pro361Leu	p.P361L	ENST00000407977		361	cCt/cTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100046	11100046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	797	700	0	ENST00000344626.4:c.1172C>T	p.Ser391Phe	p.S391F	ENST00000344626	NM_003072.3	391	tCc/tTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145668	11145668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	653	548	0	ENST00000344626.4:c.4030C>T	p.Pro1344Ser	p.P1344S	ENST00000344626	NM_003072.3	1344	Ccc/Tcc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291524	15291524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	680	506	0	ENST00000263388.2:c.3110G>A	p.Ser1037Asn	p.S1037N	ENST00000263388	NM_000435.2	1037	aGc/aAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15297757	15297757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	865	692	0	ENST00000263388.2:c.1883C>T	p.Pro628Leu	p.P628L	ENST00000263388	NM_000435.2	628	cCc/cTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791984	42791985	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	681	627	2	ENST00000575354.2:c.788_789delinsTT	p.Ala263Val	p.A263V	ENST00000575354	NM_015125.3	263	gCC/gTT																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912813	50912813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	692	639	0	ENST00000440232.2:c.2044C>T	p.Arg682Trp	p.R682W	ENST00000440232	NM_002691.3	682	Cgg/Tgg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082322	16082322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	855	748	0	ENST00000281043.3:c.136G>A	p.Gly46Arg	p.G46R	ENST00000281043	NM_005378.4	46	Ggg/Agg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39214714	39214714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	427	379	2	ENST00000402219.2:c.3410C>T	p.Ser1137Phe	p.S1137F	ENST00000402219	NM_005633.3	1137	tCt/tTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483982	212483982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	515	431	0	ENST00000342788.4:c.2221G>A	p.Gly741Arg	p.G741R	ENST00000342788	NM_005235.2	741	Gga/Aga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488678	212488678	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	720	568	0	ENST00000342788.4:c.2171T>A	p.Leu724His	p.L724H	ENST00000342788	NM_005235.2	724	cTt/cAt																																																																														
BARD1	580	MSKCC	GRCh37	2	215645966	215645966	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	580	436	0	ENST00000260947.4:c.632T>C	p.Leu211Ser	p.L211S	ENST00000260947	NM_000465.2	211	tTa/tCa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727111	40727111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	586	505	0	ENST00000373198.4:c.3853G>A	p.Asp1285Asn	p.D1285N	ENST00000373198	NM_133170.3	1285	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735493	40735493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	644	567	1	ENST00000373198.4:c.3380G>A	p.Gly1127Glu	p.G1127E	ENST00000373198	NM_133170.3	1127	gGg/gAg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175868	24175868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	604	451	0	ENST00000263121.7:c.1096C>T	p.Arg366Cys	p.R366C	ENST00000263121	NM_003073.3	366	Cgc/Tgc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259565	89259565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	385	314	1	ENST00000336596.2:c.709G>A	p.Glu237Lys	p.E237K	ENST00000336596	NM_005233.5	237	Gaa/Aaa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185161289	185161289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	808	560	0	ENST00000265026.3:c.716G>A	p.Gly239Glu	p.G239E	ENST00000265026	NM_004721.4	239	gGa/gAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612016	189612016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	510	480	1	ENST00000264731.3:c.1768C>T	p.Pro590Ser	p.P590S	ENST00000264731	NM_003722.4	590	Cct/Tct																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747933	41747933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	253	391	0	ENST00000226382.2:c.836C>T	p.Pro279Leu	p.P279L	ENST00000226382	NM_003924.3	279	cCc/cTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144564	55144564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	639	493	0	ENST00000257290.5:c.2038G>A	p.Gly680Arg	p.G680R	ENST00000257290	NM_006206.4	680	Gga/Aga																																																																														
KDR	3791	MSKCC	GRCh37	4	55955874	55955874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	358	560	2	ENST00000263923.4:c.3288G>A	p.Trp1096Ter	p.W1096*	ENST00000263923	NM_002253.2	1096	tgG/tgA																																																																														
KDR	3791	MSKCC	GRCh37	4	55980303	55980303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	711	534	0	ENST00000263923.4:c.788C>T	p.Pro263Leu	p.P263L	ENST00000263923	NM_002253.2	263	cCt/cTt																																																																														
TET2	54790	MSKCC	GRCh37	4	106155202	106155202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	559	435	0	ENST00000380013.4:c.103C>T	p.Gln35Ter	p.Q35*	ENST00000380013	NM_001127208.2	35	Cag/Tag																																																																														
TET2	54790	MSKCC	GRCh37	4	106156594	106156594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	263	377	0	ENST00000380013.4:c.1495C>T	p.Pro499Ser	p.P499S	ENST00000380013	NM_001127208.2	499	Cca/Tca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	508	470	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112177379	112177379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	461	393	0	ENST00000257430.4:c.6088C>T	p.Leu2030Phe	p.L2030F	ENST00000257430	NM_000038.5	2030	Ctt/Ttt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066701	94066701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	624	542	0	ENST00000369303.4:c.1058C>T	p.Pro353Leu	p.P353L	ENST00000369303	NM_004440.3	353	cCt/cTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704482	117704482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	347	338	0	ENST00000368508.3:c.2494A>G	p.Lys832Glu	p.K832E	ENST00000368508	NM_002944.2	832	Aag/Gag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725528	117725528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	625	474	0	ENST00000368508.3:c.353G>A	p.Arg118Gln	p.R118Q	ENST00000368508	NM_002944.2	118	cGa/cAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979385	2979385	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	280	472	0	ENST00000396946.4:c.862C>T	p.Gln288Ter	p.Q288*	ENST00000396946	NM_032415.4	288	Cag/Tag																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971210	13971210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	210	359	0	ENST00000405192.2:c.719C>T	p.Thr240Ile	p.T240I	ENST00000405192	NM_001163147.1	240	aCc/aTc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444318	50444318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	389	260	0	ENST00000331340.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000331340	NM_006060.4	83	cGa/cAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467856	50467856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	653	308	1	ENST00000331340.3:c.1091C>T	p.Ser364Leu	p.S364L	ENST00000331340	NM_006060.4	364	tCg/tTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81335745	81335745	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	467	317	0	ENST00000222390.5:c.1617-2A>G		p.X539_splice	ENST00000222390	NM_000601.4	539																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106509849	106509849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1444	336	564	1	ENST00000359195.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000359195	NM_002649.2	615	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116339637	116339637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	871	358	0	ENST00000397752.3:c.499G>A	p.Glu167Lys	p.E167K	ENST00000397752	NM_000245.2	167	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116395422	116395422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1348	245	471	0	ENST00000397752.3:c.1715G>T	p.Ser572Ile	p.S572I	ENST00000397752	NM_000245.2	572	aGt/aTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132751	152132751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	1231	465	2	ENST00000262189.6:c.121C>T	p.Arg41Cys	p.R41C	ENST00000262189	NM_170606.2	41	Cgc/Tgc																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538897	23538897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150251660		P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	546	437	0	ENST00000380871.4:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000380871	NM_006167.3	181	cGa/cAa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38282218	38282218	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	404	362	0	ENST00000425967.3:c.839-1G>A		p.X280_splice	ENST00000425967	NM_001174067.1	280																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38285945	38285945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	508	401	1	ENST00000425967.3:c.466C>T	p.Pro156Ser	p.P156S	ENST00000425967	NM_001174067.1	156	Ccc/Tcc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68934283	68934283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	807	557	0	ENST00000288368.4:c.349C>T	p.Arg117Cys	p.R117C	ENST00000288368	NM_024870.2	117	Cgt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68981345	68981345	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	563	519	0	ENST00000288368.4:c.1417A>T	p.Asn473Tyr	p.N473Y	ENST00000288368	NM_024870.2	473	Aat/Tat																																																																														
PREX2	80243	MSKCC	GRCh37	8	68999972	68999972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	626	532	0	ENST00000288368.4:c.2041C>T	p.Pro681Ser	p.P681S	ENST00000288368	NM_024870.2	681	Cca/Tca																																																																														
PREX2	80243	MSKCC	GRCh37	8	69011996	69011996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	959	757	2	ENST00000288368.4:c.2633C>T	p.Pro878Leu	p.P878L	ENST00000288368	NM_024870.2	878	cCt/cTt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981887	70981887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	598	592	1	ENST00000276594.2:c.209C>T	p.Pro70Leu	p.P70L	ENST00000276594	NM_024504.3	70	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317926	8317926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	507	366	1	ENST00000356435.5:c.5687C>T	p.Ser1896Phe	p.S1896F	ENST00000356435		1896	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971116	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	375	382	1	ENST00000304494.5:c.242_243delinsTT	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCC/cTT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971116	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	375	382	1	ENST00000304494.5:c.242_243delinsTT	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCC/cTT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971115	21971116	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	375	382	1	ENST00000304494.5:c.242_243delinsTT	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCC/cTT																																																																														
TEK	7010	MSKCC	GRCh37	9	27202881	27202881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	716	603	0	ENST00000380036.4:c.1973C>T	p.Ser658Phe	p.S658F	ENST00000380036	NM_000459.3	658	tCt/tTt																																																																														
SYK	6850	MSKCC	GRCh37	9	93624537	93624537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	687	532	0	ENST00000375746.1:c.628G>A	p.Glu210Lys	p.E210K	ENST00000375746	NM_001174167.1	210	Gaa/Aaa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797283	135797283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	437	347	0	ENST00000298552.3:c.586C>T	p.Pro196Ser	p.P196S	ENST00000298552	NM_001162426.1	196	Cct/Tct																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	869	717	1	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76776904	76776904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	359	582	0	ENST00000373344.5:c.7048C>T	p.Leu2350Phe	p.L2350F	ENST00000373344	NM_000489.3	2350	Ctt/Ttt																																																																														
ATRX	546	MSKCC	GRCh37	X	76920223	76920223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	775	569	0	ENST00000373344.5:c.3854C>T	p.Ser1285Phe	p.S1285F	ENST00000373344	NM_000489.3	1285	tCc/tTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123181333	123181333	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	270	446	0	ENST00000218089.9:c.797T>A	p.Leu266His	p.L266H	ENST00000218089	NM_001042749.1	266	cTc/cAc																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152861646	152861646	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0018561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	582	476	1	ENST00000406277.2:c.107-1G>A		p.X36_splice	ENST00000406277	NM_152274.4	36																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89390174	89390174	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	84	369	0	ENST00000336596.2:c.923A>G	p.Asn308Ser	p.N308S	ENST00000336596	NM_005233.5	308	aAt/aGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295199	1295200	+	upstream_gene_variant	5'Flank	INS	-	-	GGAAGGGGAGGGGCTGGGAGG			P-0018657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	23	166	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295164	1295168	+	upstream_gene_variant	5'Flank	INS	AACTC	AACTC	GGGAGG			P-0018657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	35	138	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	20	668	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	382	728	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	82	590	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	438	736	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	98	531	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	51	603	0	ENST00000558401.1:c.3G>A	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atA																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652203	36652203	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	248	908	0	ENST00000244741.5:c.325G>C	p.Asp109His	p.D109H	ENST00000244741	NM_000389.4	109	Gac/Cac																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185183604	185183604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	121	369	0	ENST00000265026.3:c.1458G>C	p.Leu486Phe	p.L486F	ENST00000265026	NM_004721.4	486	ttG/ttC																																																																														
NF2	4771	MSKCC	GRCh37	22	30077427	30077427	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	29	240	0	ENST00000338641.4:c.1575-1G>C		p.X525_splice	ENST00000338641	NM_000268.3	525																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662458	227662458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	206	701	0	ENST00000305123.5:c.997G>A	p.Glu333Lys	p.E333K	ENST00000305123	NM_005544.2	333	Gaa/Aaa																																																																														
NF2	4771	MSKCC	GRCh37	22	30070841	30070841	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	45	762	0	ENST00000338641.4:c.1357C>T	p.Gln453Ter	p.Q453*	ENST00000338641	NM_000268.3	453	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40979275	40979275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	147	502	0	ENST00000373198.4:c.1858C>T	p.Pro620Ser	p.P620S	ENST00000373198	NM_133170.3	620	Cct/Tct																																																																														
JAK1	3716	MSKCC	GRCh37	1	65305323	65305323	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	63	508	0	ENST00000342505.4:c.2805G>C	p.Glu935Asp	p.E935D	ENST00000342505	NM_002227.2	935	gaG/gaC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099971	27099971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	190	927	0	ENST00000324856.7:c.3850C>T	p.Pro1284Ser	p.P1284S	ENST00000324856	NM_006015.4	1284	Cct/Tct																																																																														
JAK1	3716	MSKCC	GRCh37	1	65305355	65305355	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	63	552	0	ENST00000342505.4:c.2773G>T	p.Glu925Ter	p.E925*	ENST00000342505	NM_002227.2	925	Gaa/Taa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65309866	65309866	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	137	626	0	ENST00000342505.4:c.2284G>C	p.Glu762Gln	p.E762Q	ENST00000342505	NM_002227.2	762	Gag/Cag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339055	65339055	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	31	358	0	ENST00000342505.4:c.481C>T	p.Gln161Ter	p.Q161*	ENST00000342505	NM_002227.2	161	Cag/Tag																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163811	72163811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	44	356	0	ENST00000357731.5:c.547G>C	p.Glu183Gln	p.E183Q	ENST00000357731	NM_173808.2	183	Gaa/Caa																																																																														
ATM	472	MSKCC	GRCh37	11	108139292	108139292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	45	631	0	ENST00000278616.4:c.2794G>C	p.Asp932His	p.D932H	ENST00000278616	NM_000051.3	932	Gat/Cat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352639	118352639	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	52	948	0	ENST00000534358.1:c.3844G>C	p.Glu1282Gln	p.E1282Q	ENST00000534358	NM_005933.3	1282	Gaa/Caa																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025878	1025878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	230	710	0	ENST00000358495.3:c.652C>G	p.Gln218Glu	p.Q218E	ENST00000358495	NM_134424.2	218	Cag/Gag																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50482423	50482423	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	56	510	0	ENST00000394963.4:c.771+3G>T		p.X257_splice	ENST00000394963	NM_003076.4	257																																																																															
BRCA2	675	MSKCC	GRCh37	13	32911971	32911971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	98	373	0	ENST00000380152.3:c.3479G>C	p.Arg1160Thr	p.R1160T	ENST00000380152		1160	aGa/aCa																																																																														
RB1	5925	MSKCC	GRCh37	13	49033917	49033917	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	167	553	0	ENST00000267163.4:c.2054A>C	p.Gln685Pro	p.Q685P	ENST00000267163	NM_000321.2	685	cAg/cCg																																																																														
RB1	5925	MSKCC	GRCh37	13	49054172	49054172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	48	285	0	ENST00000267163.4:c.2752G>C	p.Asp918His	p.D918H	ENST00000267163	NM_000321.2	918	Gat/Cat																																																																														
RB1	5925	MSKCC	GRCh37	13	49054201	49054201	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	25	257	0	ENST00000267163.4:c.2781G>C	p.Glu927Asp	p.E927D	ENST00000267163	NM_000321.2	927	gaG/gaC																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30047569	30047569	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	69	258	0	ENST00000331968.5:c.2435-3C>T		p.X812_splice	ENST00000331968	NM_002742.2	812																																																																															
DICER1	23405	MSKCC	GRCh37	14	95560255	95560255	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	90	394	0	ENST00000343455.3:c.5334G>C	p.Glu1778Asp	p.E1778D	ENST00000343455	NM_177438.2	1778	gaG/gaC																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630425	90630425	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	241	931	1	ENST00000330062.3:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000330062	NM_002168.2	296	Cag/Tag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639000	3639000	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	37	703	0	ENST00000294008.3:c.4636+3G>A		p.X1546_splice	ENST00000294008	NM_032444.2	1546																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14029192	14029192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	22	182	0	ENST00000311895.7:c.1403G>A	p.Arg468Lys	p.R468K	ENST00000311895	NM_005236.2	468	aGa/aAa																																																																														
CDH1	999	MSKCC	GRCh37	16	68844119	68844119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	148	604	0	ENST00000261769.5:c.707C>A	p.Ser236Ter	p.S236*	ENST00000261769	NM_004360.3	236	tCa/tAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29548865	29548865	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	32	692	0	ENST00000358273.4:c.1642-3C>T		p.X548_splice	ENST00000358273	NM_001042492.2	548																																																																															
NF1	4763	MSKCC	GRCh37	17	29684350	29684350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	25	279	0	ENST00000358273.4:c.7933G>C	p.Glu2645Gln	p.E2645Q	ENST00000358273	NM_001042492.2	2645	Gag/Cag																																																																														
NF1	4763	MSKCC	GRCh37	17	29687508	29687508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	81	332	0	ENST00000358273.4:c.8164A>G	p.Thr2722Ala	p.T2722A	ENST00000358273	NM_001042492.2	2722	Aca/Gca																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657560	37657560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	36	357	0	ENST00000447079.4:c.2477C>G	p.Ser826Cys	p.S826C	ENST00000447079	NM_015083.1	826	tCt/tGt																																																																														
EZH1	2145	MSKCC	GRCh37	17	40872362	40872362	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	236	1005	0	ENST00000428826.2:c.593C>G	p.Ser198Ter	p.S198*	ENST00000428826		198	tCa/tGa																																																																														
CD79B	974	MSKCC	GRCh37	17	62007614	62007614	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	60	914	0	ENST00000392795.3:c.253G>C	p.Glu85Gln	p.E85Q	ENST00000392795	NM_001039933.1	85	Gag/Cag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967008	25967008	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	269	950	0	ENST00000435504.4:c.2198G>C	p.Gly733Ala	p.G733A	ENST00000435504		733	gGa/gCa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525111	9525111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	93	578	0	ENST00000353224.5:c.1774C>G	p.Gln592Glu	p.Q592E	ENST00000353224	NM_177990.2	592	Caa/Gaa																																																																														
NF2	4771	MSKCC	GRCh37	22	30067818	30067818	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	37	258	0	ENST00000338641.4:c.1003G>T	p.Glu335Ter	p.E335*	ENST00000338641	NM_000268.3	335	Gag/Tag																																																																														
NF2	4771	MSKCC	GRCh37	22	30069371	30069371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	62	888	0	ENST00000338641.4:c.1236C>G	p.Ile412Met	p.I412M	ENST00000338641	NM_000268.3	412	atC/atG																																																																														
EP300	2033	MSKCC	GRCh37	22	41562644	41562644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	24	143	0	ENST00000263253.7:c.3848G>C	p.Arg1283Thr	p.R1283T	ENST00000263253	NM_001429.3	1283	aGg/aCg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620500	52620500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	145	522	1	ENST00000394830.3:c.3253G>A	p.Glu1085Lys	p.E1085K	ENST00000394830	NM_018313.4	1085	Gag/Aag																																																																														
BCL6	604	MSKCC	GRCh37	3	187440334	187440334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	293	553	0	ENST00000232014.4:c.2033G>A	p.Arg678His	p.R678H	ENST00000232014	NM_001130845.1	678	cGc/cAc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177936	56177936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	33	465	0	ENST00000399503.3:c.2909C>T	p.Ser970Phe	p.S970F	ENST00000399503	NM_005921.1	970	tCt/tTt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177990	56177990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	30	449	1	ENST00000399503.3:c.2963C>T	p.Ser988Phe	p.S988F	ENST00000399503	NM_005921.1	988	tCt/tTt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923266	131923266	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	19	62	0	ENST00000265335.6:c.769G>C	p.Glu257Gln	p.E257Q	ENST00000265335		257	Gaa/Caa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923690	131923690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	62	223	0	ENST00000265335.6:c.960G>T	p.Arg320Ser	p.R320S	ENST00000265335		320	agG/agT																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522626	176522626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1368	157	1421	0	ENST00000292408.4:c.1723G>A	p.Asp575Asn	p.D575N	ENST00000292408	NM_213647.1	575	Gac/Aac																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056650	26056650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	26	186	0	ENST00000343677.2:c.7G>A	p.Glu3Lys	p.E3K	ENST00000343677	NM_005319.3	3	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732930	44732930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	260	430	0	ENST00000377967.4:c.133G>A	p.Glu45Lys	p.E45K	ENST00000377967	NM_021140.2	45	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	99	480	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	39	513	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	39	513	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539564	187539564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	92	427	1	ENST00000441802.2:c.8176C>T	p.Arg2726Ter	p.R2726*	ENST00000441802	NM_005245.3	2726	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579556	7579560	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAA	ATCAA	-			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	234	718	0	ENST00000269305.4:c.127_131del	p.Leu43AlafsTer7	p.L43Afs*7	ENST00000269305	NM_001126112.2	43	TTGATg/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	39	513	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	90	513	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	90	513	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CBL	867	MSKCC	GRCh37	11	119149334	119149334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	53	470	0	ENST00000264033.4:c.1342G>A	p.Glu448Lys	p.E448K	ENST00000264033	NM_005188.3	448	Gag/Aag																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630412	90630412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	81	686	0	ENST00000330062.3:c.899C>G	p.Ser300Cys	p.S300C	ENST00000330062	NM_002168.2	300	tCt/tGt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943749	9943749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	151	643	1	ENST00000330684.3:c.1192G>A	p.Asp398Asn	p.D398N	ENST00000330684	NM_001134407.1	398	Gac/Aac																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2199910	2199910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	148	632	1	ENST00000398665.3:c.679G>C	p.Glu227Gln	p.E227Q	ENST00000398665	NM_032482.2	227	Gag/Cag																																																																														
CIC	23152	MSKCC	GRCh37	19	42791524	42791524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	81	727	2	ENST00000575354.2:c.505C>T	p.Arg169Cys	p.R169C	ENST00000575354	NM_015125.3	169	Cgt/Tgt																																																																														
INHA	3623	MSKCC	GRCh37	2	220439938	220439938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	187	785	0	ENST00000243786.2:c.791G>A	p.Arg264Lys	p.R264K	ENST00000243786	NM_002191.3	264	aGa/aAa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624807	9624807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	90	420	0	ENST00000353224.5:c.170C>T	p.Ser57Leu	p.S57L	ENST00000353224	NM_177990.2	57	tCa/tTa																																																																														
ATR	545	MSKCC	GRCh37	3	142184047	142184047	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	47	494	0	ENST00000350721.4:c.6933G>C	p.Lys2311Asn	p.K2311N	ENST00000350721	NM_001184.3	2311	aaG/aaC																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542576	187542576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	61	583	0	ENST00000441802.2:c.5164C>T	p.Gln1722Ter	p.Q1722*	ENST00000441802	NM_005245.3	1722	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627950	187627950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	85	785	1	ENST00000441802.2:c.3032C>G	p.Ser1011Cys	p.S1011C	ENST00000441802	NM_005245.3	1011	tCt/tGt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417534	139417534	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	151	774	0	ENST00000277541.6:c.510C>A	p.Phe170Leu	p.F170L	ENST00000277541	NM_017617.3	170	ttC/ttA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	139	904	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	54	503	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	122	1015	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	118	564	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	118	564	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	118	564	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023855	27023855	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	91	380	0	ENST00000324856.7:c.961C>T	p.Gln321Ter	p.Q321*	ENST00000324856	NM_006015.4	321	Cag/Tag																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076727	72076727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	104	675	0	ENST00000357731.5:c.770G>A	p.Trp257Ter	p.W257*	ENST00000357731	NM_173808.2	257	tGg/tAg																																																																														
TET1	80312	MSKCC	GRCh37	10	70406105	70406105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	101	789	0	ENST00000373644.4:c.3619C>T	p.Pro1207Ser	p.P1207S	ENST00000373644	NM_030625.2	1207	Cct/Tct																																																																														
PGR	5241	MSKCC	GRCh37	11	100933480	100933480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	27	255	0	ENST00000325455.5:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000325455	NM_001202474.3	637	cGa/cAa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195282	102195282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	48	440	0	ENST00000263464.3:c.42G>A	p.Met14Ile	p.M14I	ENST00000263464	NM_001165.4	14	atG/atA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644490	18644490	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs181773550		P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	87	597	0	ENST00000266497.5:c.2668G>A	p.Asp890Asn	p.D890N	ENST00000266497		890	Gat/Aat																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644479	21644479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	104	494	4	ENST00000421138.2:c.188C>T	p.Ser63Phe	p.S63F	ENST00000421138		63	tCt/tTt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859007	57859007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	156	693	0	ENST00000228682.2:c.503C>T	p.Pro168Leu	p.P168L	ENST00000228682	NM_005269.2	168	cCt/cTt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987153	36987153	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	122	792	0	ENST00000354822.5:c.536T>G	p.Val179Gly	p.V179G	ENST00000354822	NM_001079668.2	179	gTg/gGg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420258	88420258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	132	598	0	ENST00000360948.2:c.2428G>A	p.Glu810Lys	p.E810K	ENST00000360948	NM_001012338.2	810	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843480	3843480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	50	583	0	ENST00000262367.5:c.1123G>A	p.Gly375Arg	p.G375R	ENST00000262367	NM_004380.2	375	Gga/Aga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341532	89341532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	56	603	0	ENST00000301030.4:c.7538G>A	p.Gly2513Glu	p.G2513E	ENST00000301030	NM_001256183.1	2513	gGa/gAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29527613	29527614	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	35	464	1	ENST00000358273.4:c.1062_1062+1delinsAA		p.X354_splice	ENST00000358273	NM_001042492.2	354																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246058	41246058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	159	710	0	ENST00000357654.3:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000357654	NM_007294.3	497	cCc/cTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222406	2222406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	123	604	3	ENST00000398665.3:c.3238G>A	p.Gly1080Arg	p.G1080R	ENST00000398665	NM_032482.2	1080	Ggg/Agg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290923	15290923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	94	863	0	ENST00000263388.2:c.3287G>A	p.Gly1096Glu	p.G1096E	ENST00000263388	NM_000435.2	1096	gGg/gAg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18272860	18272861	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	AG	AG	TA			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	68	656	0	ENST00000222254.8:c.900_901delinsTA	p.Ala301Thr	p.A301T	ENST00000222254	NM_005027.3	300	ccAGcg/ccTAcg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224124	36224124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	195	903	2	ENST00000222270.7:c.6674C>T	p.Ser2225Phe	p.S2225F	ENST00000222270	NM_014727.1	2225	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566824	212566824	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs200092686		P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	54	361	0	ENST00000342788.4:c.1357A>T	p.Ile453Phe	p.I453F	ENST00000342788	NM_005235.2	453	Atc/Ttc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812260	212812260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	59	484	0	ENST00000342788.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000342788	NM_005235.2	106	Cgt/Tgt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561565	9561565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	54	451	0	ENST00000353224.5:c.217G>A	p.Gly73Arg	p.G73R	ENST00000353224	NM_177990.2	73	Gga/Aga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022656	31022656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	115	660	1	ENST00000375687.4:c.2141C>T	p.Ser714Phe	p.S714F	ENST00000375687	NM_015338.5	714	tCc/tTc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39742679	39742679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	84	465	2	ENST00000361337.2:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000361337	NM_003286.2	508	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076954	41076954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	91	554	0	ENST00000373198.4:c.1466C>T	p.Pro489Leu	p.P489L	ENST00000373198	NM_133170.3	489	cCt/cTt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252937	36252937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	121	472	0	ENST00000300305.3:c.425C>T	p.Ala142Val	p.A142V	ENST00000300305		142	gCt/gTt																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645693	12645693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	33	318	0	ENST00000251849.4:c.776C>T	p.Ser259Phe	p.S259F	ENST00000251849	NM_002880.3	259	tCc/tTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391162	89391162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	59	511	1	ENST00000336596.2:c.1228G>A	p.Asp410Asn	p.D410N	ENST00000336596	NM_005233.5	410	Gat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391234	89391234	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	26	347	0	ENST00000336596.2:c.1300C>T	p.Gln434Ter	p.Q434*	ENST00000336596	NM_005233.5	434	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521711	89521711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	34	604	1	ENST00000336596.2:c.2788G>A	p.Glu930Lys	p.E930K	ENST00000336596	NM_005233.5	930	Gaa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142281853	142281853	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	50	610	0	ENST00000350721.4:c.391T>A	p.Leu131Ile	p.L131I	ENST00000350721	NM_001184.3	131	Tta/Ata																																																																														
TP63	8626	MSKCC	GRCh37	3	189582192	189582192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	70	527	0	ENST00000264731.3:c.751C>T	p.Arg251Cys	p.R251C	ENST00000264731	NM_003722.4	251	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542190	187542213	+	inframe_deletion	In_Frame_Del	DEL	ATGCACTTGGACGGTAAAGTGAAA	ATGCACTTGGACGGTAAAGTGAAA	-			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	40	570	0	ENST00000441802.2:c.5527_5550del	p.Phe1843_His1850del	p.F1843_H1850del	ENST00000441802	NM_005245.3	1843	TTTCACTTTACCGTCCAAGTGCAT/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	84	627	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35876467	35876467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	129	660	0	ENST00000303115.3:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000303115	NM_002185.3	420	tCt/tTt																																																																														
MSH3	4437	MSKCC	GRCh37	5	80160726	80160726	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	117	805	0	ENST00000265081.6:c.3095T>G	p.Phe1032Cys	p.F1032C	ENST00000265081	NM_002439.4	1032	tTc/tGc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662625	117662625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	87	644	1	ENST00000368508.3:c.4840C>T	p.Pro1614Ser	p.P1614S	ENST00000368508	NM_002944.2	1614	Cca/Tca																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729720	41729720	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	58	479	1	ENST00000242208.4:c.809A>T	p.Lys270Ile	p.K270I	ENST00000242208	NM_002192.2	270	aAa/aTa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729961	41729961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	143	632	1	ENST00000242208.4:c.568G>A	p.Glu190Lys	p.E190K	ENST00000242208	NM_002192.2	190	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467675	50467675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759124417		P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	118	668	0	ENST00000331340.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000331340	NM_006060.4	304	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69009359	69009359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	103	726	1	ENST00000288368.4:c.2476G>A	p.Asp826Asn	p.D826N	ENST00000288368	NM_024870.2	826	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	181	576	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	181	576	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	181	576	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
SYK	6850	MSKCC	GRCh37	9	93624541	93624541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	103	693	0	ENST00000375746.1:c.632G>A	p.Gly211Glu	p.G211E	ENST00000375746	NM_001174167.1	211	gGg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	165	385	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0019381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	348	883	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
CYLD	1540	MSKCC	GRCh37	16	50815250	50815250	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	275	692	0	ENST00000398568.2:c.1603A>G	p.Ser535Gly	p.S535G	ENST00000398568	NM_001042412.1	535	Agc/Ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579555	7579562	+	frameshift_variant	Frame_Shift_Del	DEL	CATCAAAT	CATCAAAT	-			P-0019381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	215	889	0	ENST00000269305.4:c.125_132del	p.Asp42AlafsTer7	p.D42Afs*7	ENST00000269305	NM_001126112.2	42	gATTTGATG/g																																																																														
ALK	238	MSKCC	GRCh37	2	29455254	29455254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200563480		P-0019381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	185	640	0	ENST00000389048.3:c.2548G>A	p.Gly850Arg	p.G850R	ENST00000389048	NM_004304.4	850	Ggg/Agg																																																																														
EP300	2033	MSKCC	GRCh37	22	41574201	41574201	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	228	619	1	ENST00000263253.7:c.6490del	p.Gln2164ArgfsTer5	p.Q2164Rfs*5	ENST00000263253	NM_001429.3	2162	agC/ag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732942	30732942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	109	313	0	ENST00000359013.4:c.1630G>A	p.Glu544Lys	p.E544K	ENST00000359013	NM_001024847.2	544	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271192	153271192	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0019381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	92	276	0	ENST00000281708.4:c.584+2T>C		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																															
FAT1	2195	MSKCC	GRCh37	4	187628303	187628307	+	frameshift_variant	Frame_Shift_Del	DEL	TAAGG	TAAGG	A			P-0019381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	234	711	0	ENST00000441802.2:c.2675_2679delinsT	p.Ser892LeufsTer21	p.S892Lfs*21	ENST00000441802	NM_005245.3	892	tCCTTA/tT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971068	21971074	+	protein_altering_variant	In_Frame_Del	DEL	AGCACCA	AGCACCA	C			P-0019381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	128	355	0	ENST00000304494.5:c.284_290delinsG	p.Val95_Leu97delinsGly	p.V95_L97delinsG	ENST00000304494	NM_000077.4	95	gTGGTGCTg/gGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971068	21971074	+	protein_altering_variant	In_Frame_Del	DEL	AGCACCA	AGCACCA	C			P-0019381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	128	355	0	ENST00000304494.5:c.284_290delinsG	p.Val95_Leu97delinsGly	p.V95_L97delinsG	ENST00000304494	NM_000077.4	95	gTGGTGCTg/gGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971068	21971074	+	protein_altering_variant	In_Frame_Del	DEL	AGCACCA	AGCACCA	C			P-0019381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	128	355	0	ENST00000304494.5:c.284_290delinsG	p.Val95_Leu97delinsGly	p.V95_L97delinsG	ENST00000304494	NM_000077.4	95	gTGGTGCTg/gGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	34	569	0				ENST00000310581	NM_198253.2																																																																																
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	38	521	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	34	717	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	33	553	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	33	553	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	33	553	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526532	66526532	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	39	621	0	ENST00000358598.2:c.1088C>G	p.Ser363Ter	p.S363*	ENST00000358598	NM_212471.2	363	tCa/tGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	68	827	0				ENST00000310581	NM_198253.2																																																																																
MED12	9968	MSKCC	GRCh37	X	70344018	70344018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	83	1001	0	ENST00000374080.3:c.1754G>A	p.Arg585Gln	p.R585Q	ENST00000374080		585	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735503	40735503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	55	759	0	ENST00000373198.4:c.3370G>A	p.Glu1124Lys	p.E1124K	ENST00000373198	NM_133170.3	1124	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845844	72845844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	57	673	0	ENST00000268489.5:c.3623C>T	p.Ser1208Leu	p.S1208L	ENST00000268489	NM_006885.3	1208	tCg/tTg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9547019	9547019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	19	251	0	ENST00000353224.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000353224	NM_177990.2	335	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944422	40944422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	54	765	0	ENST00000373198.4:c.2080C>T	p.Pro694Ser	p.P694S	ENST00000373198	NM_133170.3	694	Cct/Tct																																																																														
HRAS	3265	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	455	768	0	ENST00000311189.7:c.38G>A	p.Gly13Asp	p.G13D	ENST00000311189		13	gGt/gAt																																																																														
PGR	5241	MSKCC	GRCh37	11	100912795	100912795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	72	600	0	ENST00000325455.5:c.2527G>A	p.Glu843Lys	p.E843K	ENST00000325455	NM_001202474.3	843	Gag/Aag																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740416	58740416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777279856		P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	86	771	0	ENST00000305921.3:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000305921	NM_003620.3	441	Cgt/Tgt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524603	176524603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	92	1028	5	ENST00000292408.4:c.2335G>A	p.Asp779Asn	p.D779N	ENST00000292408	NM_213647.1	779	Gat/Aat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508790	106508790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	53	576	1	ENST00000359195.3:c.784C>T	p.Pro262Ser	p.P262S	ENST00000359195	NM_002649.2	262	Ccc/Tcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106069	27106069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	57	602	0	ENST00000324856.7:c.5680C>T	p.Gln1894Ter	p.Q1894*	ENST00000324856	NM_006015.4	1894	Cag/Tag																																																																														
MPL	4352	MSKCC	GRCh37	1	43812502	43812503	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	54	681	1	ENST00000372470.3:c.1205_1206delinsTT	p.Ser402Phe	p.S402F	ENST00000372470	NM_005373.2	402	tCC/tTT																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330583	65330583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	70	769	0	ENST00000342505.4:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000342505	NM_002227.2	355	Gag/Aag																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166005	118166005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	48	545	0	ENST00000369448.3:c.515C>T	p.Ser172Phe	p.S172F	ENST00000369448	NM_017709.3	172	tCc/tTc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562973	21562973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	60	955	0	ENST00000382592.4:c.946C>T	p.Pro316Ser	p.P316S	ENST00000382592	NM_014572.2	316	Cca/Tca																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611325	28611325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	78	722	0	ENST00000241453.7:c.1306A>G	p.Arg436Gly	p.R436G	ENST00000241453	NM_004119.2	436	Aga/Gga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748779	43748780	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	100	1033	4	ENST00000382044.4:c.2026_2027delinsTT	p.Pro676Phe	p.P676F	ENST00000382044	NM_001141980.1	676	CCt/TTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862944	9862944	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	36	490	0	ENST00000330684.3:c.2359G>T	p.Glu787Ter	p.E787*	ENST00000330684	NM_001134407.1	787	Gag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974748	15974748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	47	521	1	ENST00000268712.3:c.4127C>T	p.Pro1376Leu	p.P1376L	ENST00000268712	NM_006311.3	1376	cCg/cTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29560134	29560146	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTTGAGAGATT	GGTTTGAGAGATT	-			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	43	403	0	ENST00000358273.4:c.3614_3626del	p.Phe1205TrpfsTer6	p.F1205Wfs*6	ENST00000358273	NM_001042492.2	1204	cGGTTTGAGAGATTg/cg																																																																														
NF1	4763	MSKCC	GRCh37	17	29679299	29679299	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	52	515	0	ENST00000358273.4:c.7482G>A	p.Trp2494Ter	p.W2494*	ENST00000358273	NM_001042492.2	2494	tgG/tgA																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78857590	78857590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	69	761	0	ENST00000306801.3:c.1660C>T	p.Leu554Phe	p.L554F	ENST00000306801	NM_020761.2	554	Ctt/Ttt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250268	39250268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	115	1221	0	ENST00000402219.2:c.1301G>A	p.Gly434Glu	p.G434E	ENST00000402219	NM_005633.3	434	gGa/gAa																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96920718	96920718	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	54	587	0	ENST00000258439.3:c.262C>T	p.Gln88Ter	p.Q88*	ENST00000258439	NM_001193304.2	88	Cag/Tag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257832	198257832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	66	637	2	ENST00000335508.6:c.3620C>T	p.Ser1207Leu	p.S1207L	ENST00000335508	NM_012433.2	1207	tCg/tTg																																																																														
BARD1	580	MSKCC	GRCh37	2	215657122	215657122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	46	606	0	ENST00000260947.4:c.263C>T	p.Thr88Ile	p.T88I	ENST00000260947	NM_000465.2	88	aCc/aTc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37061893	37061893	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	52	567	0	ENST00000231790.2:c.977T>G	p.Val326Gly	p.V326G	ENST00000231790	NM_000249.3	326	gTg/gGg																																																																														
TP63	8626	MSKCC	GRCh37	3	189590654	189590654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	46	476	0	ENST00000264731.3:c.1219G>A	p.Gly407Ser	p.G407S	ENST00000264731	NM_003722.4	407	Ggc/Agc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139838	55139838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	42	539	1	ENST00000257290.5:c.1499G>A	p.Arg500Gln	p.R500Q	ENST00000257290	NM_006206.4	500	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630356	187630356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	60	762	0	ENST00000441802.2:c.626G>A	p.Arg209Lys	p.R209K	ENST00000441802	NM_005245.3	209	aGa/aAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56111726	56111726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	26	184	0	ENST00000399503.3:c.326C>T	p.Ala109Val	p.A109V	ENST00000399503	NM_005921.1	109	gCg/gTg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170112	32170112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	72	953	0	ENST00000375023.3:c.3496C>T	p.Pro1166Ser	p.P1166S	ENST00000375023	NM_004557.3	1166	Cca/Tca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188237	32188238	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	87	985	3	ENST00000375023.3:c.1103_1104delinsTT	p.Ser368Phe	p.S368F	ENST00000375023	NM_004557.3	368	tCC/tTT																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444311	50444311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	46	411	0	ENST00000331340.3:c.241G>A	p.Asp81Asn	p.D81N	ENST00000331340	NM_006060.4	81	Gat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211056	55211056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	89	801	0	ENST00000275493.2:c.299C>T	p.Pro100Leu	p.P100L	ENST00000275493	NM_005228.3	100	cCt/cTt																																																																														
MET	4233	MSKCC	GRCh37	7	116436101	116436101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	50	515	0	ENST00000397752.3:c.4096C>T	p.Pro1366Ser	p.P1366S	ENST00000397752	NM_000245.2	1366	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005924	69005924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	82	939	1	ENST00000288368.4:c.2335G>A	p.Glu779Lys	p.E779K	ENST00000288368	NM_024870.2	779	Gaa/Aaa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980586	70980586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	91	871	1	ENST00000276594.2:c.791C>T	p.Pro264Leu	p.P264L	ENST00000276594	NM_024504.3	264	cCa/cTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971117	21971117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	68	650	0	ENST00000304494.5:c.241C>T	p.Pro81Ser	p.P81S	ENST00000304494	NM_000077.4	81	Ccc/Tcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971117	21971117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	68	650	0	ENST00000304494.5:c.241C>T	p.Pro81Ser	p.P81S	ENST00000304494	NM_000077.4	81	Ccc/Tcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971117	21971117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	68	650	0	ENST00000304494.5:c.241C>T	p.Pro81Ser	p.P81S	ENST00000304494	NM_000077.4	81	Ccc/Tcc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139802599	139802600	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	81	978	3	ENST00000247668.2:c.444_445delinsAA	p.Glu149Lys	p.E149K	ENST00000247668	NM_021138.3	148	aaGGag/aaAAag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321378	1321378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	64	708	0	ENST00000381566.1:c.377G>A	p.Arg126Lys	p.R126K	ENST00000381566		126	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	351	651	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	83	448	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	235	431	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	278	477	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	278	477	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412321	139412321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	356	630	1	ENST00000277541.6:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000277541	NM_017617.3	442	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	278	477	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436128	56436128	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	75	672	0	ENST00000407977.2:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000407977		337	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348772	118348772	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	75	429	0	ENST00000534358.1:c.3425A>T	p.Gln1142Leu	p.Q1142L	ENST00000534358	NM_005933.3	1142	cAg/cTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11106994	11106994	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	40	567	0	ENST00000344626.4:c.1699C>G	p.Leu567Val	p.L567V	ENST00000344626	NM_003072.3	567	Ctg/Gtg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55131112	55131112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	153	545	0	ENST00000257290.5:c.655G>A	p.Glu219Lys	p.E219K	ENST00000257290	NM_006206.4	219	Gaa/Aaa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143326451	143326451	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	118	365	0	ENST00000262992.4:c.163C>G	p.Arg55Gly	p.R55G	ENST00000262992	NM_001101669.1	55	Cgt/Ggt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671823	30671823	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	59	597	1	ENST00000376406.3:c.5137G>T	p.Glu1713Ter	p.E1713*	ENST00000376406	NM_014641.2	1713	Gag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672129	30672129	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	78	571	0	ENST00000376406.3:c.4831C>G	p.Pro1611Ala	p.P1611A	ENST00000376406	NM_014641.2	1611	Cca/Gca																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995474	68995474	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	54	411	1	ENST00000288368.4:c.1879-1G>T		p.X627_splice	ENST00000288368	NM_024870.2	627																																																																															
MED12	9968	MSKCC	GRCh37	X	70352241	70352241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	21	276	0	ENST00000374080.3:c.4268C>G	p.Ser1423Cys	p.S1423C	ENST00000374080		1423	tCt/tGt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256873	16256896	+	protein_altering_variant	In_Frame_Del	DEL	TCTGATTCTGACGAAGATGGTGAA	TCTGATTCTGACGAAGATGGTGAA	CTG			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	128	937	5	ENST00000375759.3:c.4138_4161delinsCTG	p.Ser1380_Glu1387delinsLeu	p.S1380_E1387delinsL	ENST00000375759	NM_015001.2	1380	TCTGATTCTGACGAAGATGGTGAA/CTG																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797374	45797374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	123	645	0	ENST00000372115.3:c.1103C>T	p.Ala368Val	p.A368V	ENST00000372115	NM_001048171.1	368	gCc/gTc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838327	156838327	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	121	1037	0	ENST00000524377.1:c.605A>C	p.Asn202Thr	p.N202T	ENST00000524377	NM_002529.3	202	aAt/aCt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844404	156844404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	178	1179	0	ENST00000524377.1:c.1237G>A	p.Glu413Lys	p.E413K	ENST00000524377	NM_002529.3	413	Gaa/Aaa																																																																														
MDM4	4194	MSKCC	GRCh37	1	204506621	204506622	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	109	574	2	ENST00000367182.3:c.407_408delinsAT	p.Leu136His	p.L136H	ENST00000367182	NM_001278516.1	136	cTG/cAT																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851600	63851600	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	137	706	0	ENST00000279873.7:c.2378T>A	p.Leu793His	p.L793H	ENST00000279873	NM_032199.2	793	cTt/cAt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123324058	123324058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	146	796	5	ENST00000358487.5:c.412G>A	p.Asp138Asn	p.D138N	ENST00000358487	NM_000141.4	138	Gat/Aat																																																																														
HRAS	3265	MSKCC	GRCh37	11	532685	532685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	170	1073	1	ENST00000311189.7:c.521C>T	p.Pro174Leu	p.P174L	ENST00000311189		174	cCt/cTt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946990	71946990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	174	1084	1	ENST00000298229.2:c.2839C>T	p.Pro947Ser	p.P947S	ENST00000298229	NM_001567.3	947	Cca/Tca																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125503154	125503154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	216	532	1	ENST00000428830.2:c.521T>C	p.Val174Ala	p.V174A	ENST00000428830	NM_001114121.2	174	gTt/gCt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	394761	394762	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	149	836	3	ENST00000399788.2:c.4933_4934delinsTT	p.Pro1645Leu	p.P1645L	ENST00000399788	NM_001042603.1	1645	CCa/TTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444255	49444255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	174	1221	1	ENST00000301067.7:c.3116C>T	p.Pro1039Leu	p.P1039L	ENST00000301067	NM_003482.3	1039	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444810	49444810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	177	1067	1	ENST00000301067.7:c.2656C>T	p.Pro886Ser	p.P886S	ENST00000301067	NM_003482.3	886	Cct/Tct																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109677	115109678	+	missense_variant	Missense_Mutation	DNP	TT	TT	CG			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	165	1046	1	ENST00000257566.3:c.2200_2201delinsCG	p.Lys734Arg	p.K734R	ENST00000257566	NM_016569.3	734	AAg/CGg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109994	115109994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	184	1041	0	ENST00000257566.3:c.1884C>G	p.Phe628Leu	p.F628L	ENST00000257566	NM_016569.3	628	ttC/ttG																																																																														
FLT3	2322	MSKCC	GRCh37	13	28602423	28602423	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	125	534	0	ENST00000241453.7:c.1945A>T	p.Lys649Ter	p.K649*	ENST00000241453	NM_004119.2	649	Aaa/Taa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28886154	28886154	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	117	678	0	ENST00000282397.4:c.3468T>G	p.Asp1156Glu	p.D1156E	ENST00000282397	NM_002019.4	1156	gaT/gaG																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914707	32914707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	105	805	0	ENST00000380152.3:c.6215C>T	p.Ser2072Phe	p.S2072F	ENST00000380152		2072	tCc/tTc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68352611	68352611	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	107	672	0	ENST00000487270.1:c.478T>A	p.Phe160Ile	p.F160I	ENST00000487270	NM_133509.3	160	Ttt/Att																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610426	81610426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	121	620	0	ENST00000298171.2:c.2024C>T	p.Pro675Leu	p.P675L	ENST00000298171	NM_000369.2	675	cCa/cTa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727550	66727550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	89	545	1	ENST00000307102.5:c.266C>A	p.Pro89His	p.P89H	ENST00000307102	NM_002755.3	89	cCt/cAt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420191	88420191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	111	715	0	ENST00000360948.2:c.2495C>T	p.Pro832Leu	p.P832L	ENST00000360948	NM_001012338.2	832	cCa/cTa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646280	3646280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	121	978	2	ENST00000294008.3:c.1798C>T	p.Pro600Ser	p.P600S	ENST00000294008	NM_032444.2	600	Ccg/Tcg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274121	10274121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	111	788	1	ENST00000330684.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000330684	NM_001134407.1	50	Gaa/Aaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662319	67662319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	140	657	0	ENST00000264010.4:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000264010	NM_006565.3	522	cCt/cTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81946257	81946258	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	152	916	2	ENST00000359376.3:c.1990_1991delinsTT	p.Pro664Phe	p.P664F	ENST00000359376	NM_002661.3	664	CCc/TTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	197	1012	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15942860	15942860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	140	672	0	ENST00000268712.3:c.6842A>G	p.Asp2281Gly	p.D2281G	ENST00000268712	NM_006311.3	2281	gAt/gGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29490396	29490396	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	85	579	0	ENST00000358273.4:c.479+2T>C		p.X160_splice	ENST00000358273	NM_001042492.2	160																																																																															
NF1	4763	MSKCC	GRCh37	17	29508416	29508472	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTAAAAATTGTGTTTTTTCCAGAAACAGCATTTAAATTTAAAGCCCTAAAGAAGG	TTTTAAAAATTGTGTTTTTTCCAGAAACAGCATTTAAATTTAAAGCCCTAAAGAAGG	-			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	87	370	0	ENST00000358273.4:c.587-22_621del		p.X196_splice	ENST00000358273	NM_001042492.2	196																																																																															
MALT1	10892	MSKCC	GRCh37	18	56338948	56338948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	10	82	0	ENST00000348428.3:c.73C>T	p.Pro25Ser	p.P25S	ENST00000348428	NM_006785.3	25	Ccg/Tcg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56414892	56414892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	160	841	0	ENST00000348428.3:c.2293C>T	p.Pro765Ser	p.P765S	ENST00000348428	NM_006785.3	765	Cct/Tct																																																																														
INSR	3643	MSKCC	GRCh37	19	7125509	7125509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147176789		P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	139	839	0	ENST00000302850.5:c.3043G>A	p.Glu1015Lys	p.E1015K	ENST00000302850	NM_000208.2	1015	Gag/Aag																																																																														
INSR	3643	MSKCC	GRCh37	19	7184610	7184610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	87	459	1	ENST00000302850.5:c.691G>A	p.Glu231Lys	p.E231K	ENST00000302850	NM_000208.2	231	Gaa/Aaa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10251567	10251567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	145	649	1	ENST00000340748.4:c.3365C>T	p.Ser1122Phe	p.S1122F	ENST00000340748		1122	tCc/tTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296350	15296350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	189	1003	2	ENST00000263388.2:c.2092C>T	p.Pro698Ser	p.P698S	ENST00000263388	NM_000435.2	698	Ccc/Tcc																																																																														
AXL	558	MSKCC	GRCh37	19	41743901	41743901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	172	1092	0	ENST00000301178.4:c.836C>T	p.Pro279Leu	p.P279L	ENST00000301178	NM_021913.4	279	cCa/cTa																																																																														
AXL	558	MSKCC	GRCh37	19	41749525	41749525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	110	658	2	ENST00000301178.4:c.1450G>C	p.Val484Leu	p.V484L	ENST00000301178	NM_021913.4	484	Gtg/Ctg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753429	42753429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	155	879	0	ENST00000222329.4:c.835C>T	p.Pro279Ser	p.P279S	ENST00000222329	NM_006494.2	279	Ccc/Tcc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753714	42753714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	170	1003	1	ENST00000222329.4:c.550G>A	p.Gly184Ser	p.G184S	ENST00000222329	NM_006494.2	184	Ggc/Agc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905596	50905596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	159	1020	0	ENST00000440232.2:c.724G>A	p.Ala242Thr	p.A242T	ENST00000440232	NM_002691.3	242	Gcg/Acg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50917119	50917119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	186	974	1	ENST00000440232.2:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000440232	NM_002691.3	791	Cgg/Tgg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39214714	39214714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	114	561	0	ENST00000402219.2:c.3410C>A	p.Ser1137Tyr	p.S1137Y	ENST00000402219	NM_005633.3	1137	tCt/tAt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698184	47698184	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	126	668	0	ENST00000233146.2:c.1742T>G	p.Ile581Ser	p.I581S	ENST00000233146	NM_000251.2	581	aTt/aGt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251691	212251691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	80	534	0	ENST00000342788.4:c.3368G>A	p.Ser1123Asn	p.S1123N	ENST00000342788	NM_005235.2	1123	aGt/aAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543858	212543858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	127	643	0	ENST00000342788.4:c.1541G>A	p.Gly514Glu	p.G514E	ENST00000342788	NM_005235.2	514	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570084	212570084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	112	600	0	ENST00000342788.4:c.1157C>T	p.Pro386Leu	p.P386L	ENST00000342788	NM_005235.2	386	cCa/cTa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661495	227661495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	121	817	0	ENST00000305123.5:c.1960C>T	p.Pro654Ser	p.P654S	ENST00000305123	NM_005544.2	654	Ccc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733337	40733337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	119	655	0	ENST00000373198.4:c.3469G>A	p.Asp1157Asn	p.D1157N	ENST00000373198	NM_133170.3	1157	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420017	41420017	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	114	641	0	ENST00000373198.4:c.304T>C	p.Cys102Arg	p.C102R	ENST00000373198	NM_133170.3	102	Tgc/Cgc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655401	45655402	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	138	908	1	ENST00000407780.3:c.450_451delinsTT	p.Gln151Ter	p.Q151*	ENST00000407780	NM_001283052.1	150	tcCCag/tcTTag																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24134037	24134037	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	185	764	0	ENST00000263121.7:c.188T>G	p.Ile63Arg	p.I63R	ENST00000263121	NM_003073.3	63	aTa/aGa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	148	731	3	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259568	89259568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	61	489	0	ENST00000336596.2:c.712G>A	p.Asp238Asn	p.D238N	ENST00000336596	NM_005233.5	238	Gat/Aat																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968322	134968322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	123	768	0	ENST00000398015.3:c.2835G>T	p.Gln945His	p.Q945H	ENST00000398015	NM_004441.4	945	caG/caT																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146625	185146625	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	144	756	0	ENST00000265026.3:c.256C>T	p.Gln86Ter	p.Q86*	ENST00000265026	NM_004721.4	86	Cag/Tag																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502411	186502411	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	96	573	0	ENST00000323963.5:c.134T>G	p.Leu45Arg	p.L45R	ENST00000323963		45	cTt/cGt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081666	143081666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	76	564	1	ENST00000262992.4:c.1408C>T	p.Leu470Phe	p.L470F	ENST00000262992	NM_001101669.1	470	Ctt/Ttt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541073	187541073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	111	479	0	ENST00000441802.2:c.6667C>T	p.Pro2223Ser	p.P2223S	ENST00000441802	NM_005245.3	2223	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	93	672	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35873720	35873720	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	88	520	0	ENST00000303115.3:c.676T>A	p.Phe226Ile	p.F226I	ENST00000303115	NM_002185.3	226	Ttc/Atc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047912	180047912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	165	1038	0	ENST00000261937.6:c.2263G>A	p.Gly755Ser	p.G755S	ENST00000261937	NM_182925.4	755	Ggc/Agc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163617	32163617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	82	670	0	ENST00000375023.3:c.5609C>T	p.Pro1870Leu	p.P1870L	ENST00000375023	NM_004557.3	1870	cCt/cTt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967969	93967969	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	133	658	0	ENST00000369303.4:c.1958A>C	p.Lys653Thr	p.K653T	ENST00000369303	NM_004440.3	653	aAa/aCa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979475	2979475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	143	885	0	ENST00000396946.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000396946	NM_032415.4	258	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81374353	81374353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	89	616	0	ENST00000222390.5:c.709C>T	p.His237Tyr	p.H237Y	ENST00000222390	NM_000601.4	237	Cat/Tat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509774	106509774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	122	826	1	ENST00000359195.3:c.1768C>T	p.Pro590Ser	p.P590S	ENST00000359195	NM_002649.2	590	Cct/Tct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453145	140453146	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	127	749	0	ENST00000288602.6:c.1789_1790delinsTC	p.Leu597Ser	p.L597S	ENST00000288602	NM_004333.4	597	CTa/TCa																																																																														
MYC	4609	MSKCC	GRCh37	8	128750847	128750847	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	149	845	0	ENST00000377970.2:c.384G>C	p.Gln128His	p.Q128H	ENST00000377970	NM_002467.4	128	caG/caC																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5534921	5534921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	117	763	1	ENST00000397747.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000397747	NM_025239.3	78	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971016	21971017	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	93	679	4	ENST00000304494.5:c.341_342delCCinsTT	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCC/cTT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971016	21971017	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	93	679	4	ENST00000304494.5:c.341_342delCCinsTT	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCC/cTT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971016	21971017	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	93	679	4	ENST00000304494.5:c.341_342delCCinsTT	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCC/cTT																																																																														
TEK	7010	MSKCC	GRCh37	9	27172722	27172722	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	139	761	0	ENST00000380036.4:c.737T>C	p.Phe246Ser	p.F246S	ENST00000380036	NM_000459.3	246	tTt/tCt																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430550	80430550	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	130	810	0	ENST00000286548.4:c.458T>G	p.Leu153Ter	p.L153*	ENST00000286548	NM_002072.3	153	tTa/tGa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20153923	20153923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	124	328	0	ENST00000379607.5:c.137G>A	p.Arg46Gln	p.R46Q	ENST00000379607	NM_001412.3	46	cGg/cAg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933448	39933448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	112	404	0	ENST00000378444.4:c.1151C>T	p.Pro384Leu	p.P384L	ENST00000378444	NM_001123385.1	384	cCc/cTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70356191	70356191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	184	581	0	ENST00000374080.3:c.5086C>T	p.Pro1696Ser	p.P1696S	ENST00000374080		1696	Ccg/Tcg																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152858171	152858171	+	synonymous_variant	Silent	SNP	A	A	T			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	194	602	0	ENST00000406277.2:c.444T>A	p.Val148=	p.V148=	ENST00000406277	NM_152274.4	148	gtT/gtA																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256872	16256878	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGAT	TTCTGAT	-			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	129	924	0	ENST00000375759.3:c.4138_4144del	p.Ser1380LeufsTer27	p.S1380Lfs*27	ENST00000375759	NM_015001.2	1379	ccTTCTGAT/cc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256883	16256896	+	frameshift_variant	Frame_Shift_Del	DEL	ACGAAGATGGTGAA	ACGAAGATGGTGAA	-			P-0019939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	128	923	0	ENST00000375759.3:c.4148_4161del	p.Asp1383AlafsTer13	p.D1383Afs*13	ENST00000375759	NM_015001.2	1383	gACGAAGATGGTGAA/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	78	546	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	166	762	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449764	8449764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	63	811	0	ENST00000356435.5:c.3949G>C	p.Asp1317His	p.D1317H	ENST00000356435		1317	Gac/Cac																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069599	69069599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	65	789	3	ENST00000288368.4:c.4274C>T	p.Ser1425Phe	p.S1425F	ENST00000288368	NM_024870.2	1425	tCt/tTt																																																																														
REL	5966	MSKCC	GRCh37	2	61148994	61148994	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	54	509	0	ENST00000295025.8:c.1184C>G	p.Ser395Ter	p.S395*	ENST00000295025	NM_002908.2	395	tCa/tGa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65344825	65344825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	46	418	0	ENST00000342505.4:c.212C>T	p.Ser71Phe	p.S71F	ENST00000342505	NM_002227.2	71	tCt/tTt																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165816	118165816	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	49	573	0	ENST00000369448.3:c.326G>C	p.Arg109Thr	p.R109T	ENST00000369448	NM_017709.3	109	aGa/aCa																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176145127	176145127	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	78	643	0	ENST00000367669.3:c.484C>G	p.Gln162Glu	p.Q162E	ENST00000367669	NM_022457.5	162	Cag/Gag																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577361	64577361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	54	710	0	ENST00000337652.1:c.221G>A	p.Gly74Asp	p.G74D	ENST00000337652	NM_130803.2	74	gGc/gAc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245849	46245849	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	77	505	0	ENST00000334344.6:c.3943G>T	p.Glu1315Ter	p.E1315*	ENST00000334344	NM_152641.2	1315	Gag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480377	56480377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	76	846	0	ENST00000267101.3:c.484G>A	p.Asp162Asn	p.D162N	ENST00000267101	NM_001982.3	162	Gac/Aac																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609627	81609627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	130	835	0	ENST00000298171.2:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000298171	NM_000369.2	409	Gaa/Aaa																																																																														
BLM	641	MSKCC	GRCh37	15	91354575	91354575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	58	706	0	ENST00000355112.3:c.4015A>T	p.Met1339Leu	p.M1339L	ENST00000355112	NM_000057.2	1339	Atg/Ttg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226056	2226056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	88	951	0	ENST00000326181.6:c.1753G>A	p.Asp585Asn	p.D585N	ENST00000326181	NM_032271.2	585	Gac/Aac																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976481	25976481	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	64	721	0	ENST00000435504.4:c.1064G>C	p.Arg355Thr	p.R355T	ENST00000435504		355	aGa/aCa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940141	49940141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	146	821	0	ENST00000296474.3:c.902G>C	p.Arg301Thr	p.R301T	ENST00000296474	NM_002447.2	301	aGa/aCa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89456513	89456513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	42	544	0	ENST00000336596.2:c.1689G>C	p.Leu563Phe	p.L563F	ENST00000336596	NM_005233.5	563	ttG/ttC																																																																														
ATR	545	MSKCC	GRCh37	3	142266718	142266718	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	107	772	0	ENST00000350721.4:c.3206G>C	p.Arg1069Thr	p.R1069T	ENST00000350721	NM_001184.3	1069	aGa/aCa																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158420	26158420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1335	84	1128	0	ENST00000289316.2:c.23C>A	p.Ala8Asp	p.A8D	ENST00000289316	NM_138720.2	8	gCt/gAt																																																																														
BTK	695	MSKCC	GRCh37	X	100611769	100611769	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0020065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	53	363	0	ENST00000308731.7:c.1349+3G>C		p.X450_splice	ENST00000308731	NM_000061.2	450																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	189	974	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	31	742	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	174	750	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	174	750	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295705	212295705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	83	966	1	ENST00000342788.4:c.2608G>A	p.Gly870Arg	p.G870R	ENST00000342788	NM_005235.2	870	Gga/Aga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498375	89498375	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	39	429	0	ENST00000336596.2:c.2347G>A	p.Gly783Arg	p.G783R	ENST00000336596	NM_005233.5	783	Gga/Aga																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932112	36932112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	64	825	1	ENST00000361632.4:c.2357C>T	p.Ser786Phe	p.S786F	ENST00000361632		786	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306568	41306568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	69	962	4	ENST00000373198.4:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000373198	NM_133170.3	364	cGa/cAa																																																																														
HGF	3082	MSKCC	GRCh37	7	81388076	81388076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	70	1015	2	ENST00000222390.5:c.299C>T	p.Pro100Leu	p.P100L	ENST00000222390	NM_000601.4	100	cCc/cTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509619	106509619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142822484		P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	115	856	0	ENST00000359195.3:c.1613C>T	p.Pro538Leu	p.P538L	ENST00000359195	NM_002649.2	538	cCg/cTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629184	187629184	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	90	958	0	ENST00000441802.2:c.1798C>T	p.Gln600Ter	p.Q600*	ENST00000441802	NM_005245.3	600	Cag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286791	212286791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	72	939	1	ENST00000342788.4:c.2905G>A	p.Glu969Lys	p.E969K	ENST00000342788	NM_005235.2	969	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	74	863	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55154995	55154995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	74	990	0	ENST00000257290.5:c.2704G>A	p.Asp902Asn	p.D902N	ENST00000257290	NM_006206.4	902	Gat/Aat																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121013	29121013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	102	1129	1	ENST00000328354.6:c.544C>T	p.Pro182Ser	p.P182S	ENST00000328354	NM_007194.3	182	Cct/Tct																																																																														
STK40	83931	MSKCC	GRCh37	1	36807399	36807399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	99	1020	1	ENST00000373129.3:c.1265C>T	p.Ser422Phe	p.S422F	ENST00000373129	NM_032017.1	422	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	174	750	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508169	106508169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	30	432	0	ENST00000359195.3:c.163G>A	p.Glu55Lys	p.E55K	ENST00000359195	NM_002649.2	55	Gaa/Aaa																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514308	69514308	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142959398		P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	120	904	0	ENST00000294312.3:c.373G>A	p.Glu125Lys	p.E125K	ENST00000294312	NM_005117.2	125	Gag/Aag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405968	157405968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	68	929	2	ENST00000346085.5:c.2210C>T	p.Pro737Leu	p.P737L	ENST00000346085	NM_020732.3	737	cCc/cTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086052	16086052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	103	945	0	ENST00000281043.3:c.1228G>A	p.Glu410Lys	p.E410K	ENST00000281043	NM_005378.4	410	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857368	9857368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	62	774	3	ENST00000330684.3:c.4033C>T	p.Pro1345Ser	p.P1345S	ENST00000330684	NM_001134407.1	1345	Ccc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969189	93969189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	49	652	1	ENST00000369303.4:c.1807C>T	p.Pro603Ser	p.P603S	ENST00000369303	NM_004440.3	603	Cca/Tca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641087	117641087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	76	960	0	ENST00000368508.3:c.5884G>A	p.Gly1962Arg	p.G1962R	ENST00000368508	NM_002944.2	1962	Gga/Aga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258745	16258745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	78	737	0	ENST00000375759.3:c.6010C>T	p.Pro2004Ser	p.P2004S	ENST00000375759	NM_015001.2	2004	Ccg/Tcg																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39325240	39325240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	69	924	2	ENST00000373001.3:c.79G>A	p.Gly27Ser	p.G27S	ENST00000373001	NM_022157.3	27	Ggc/Agc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46512280	46512281	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TA			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	77	793	0	ENST00000262741.5:c.958_959delinsTA	p.Gly320Ter	p.G320*	ENST00000262741	NM_003629.3	320	GGa/TAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65309880	65309880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	46	826	0	ENST00000342505.4:c.2270C>T	p.Pro757Leu	p.P757L	ENST00000342505	NM_002227.2	757	cCa/cTa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156836749	156836749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	67	1074	0	ENST00000524377.1:c.407A>C	p.Gln136Pro	p.Q136P	ENST00000524377	NM_002529.3	136	cAg/cCg																																																																														
ATM	472	MSKCC	GRCh37	11	108119741	108119741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	32	561	0	ENST00000278616.4:c.1147C>T	p.Pro383Ser	p.P383S	ENST00000278616	NM_000051.3	383	Cct/Tct																																																																														
ATM	472	MSKCC	GRCh37	11	108224510	108224510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	28	655	0	ENST00000278616.4:c.8689G>A	p.Gly2897Ser	p.G2897S	ENST00000278616	NM_000051.3	2897	Ggc/Agc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307502	118307502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	44	929	0	ENST00000534358.1:c.275C>T	p.Ser92Leu	p.S92L	ENST00000534358	NM_005933.3	92	tCg/tTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342550	118342551	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	59	525	1	ENST00000534358.1:c.676_677delinsTT	p.Pro226Phe	p.P226F	ENST00000534358	NM_005933.3	226	CCc/TTc																																																																														
CBL	867	MSKCC	GRCh37	11	119146745	119146745	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	131	979	1	ENST00000264033.4:c.908G>A	p.Trp303Ter	p.W303*	ENST00000264033	NM_005188.3	303	tGg/tAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426709	49426709	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	44	440	1	ENST00000301067.7:c.11779C>T	p.Gln3927Ter	p.Q3927*	ENST00000301067	NM_003482.3	3927	Cag/Tag																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813325	102813326	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	100	882	2	ENST00000307046.8:c.363_364delinsTT	p.Arg122Cys	p.R122C	ENST00000307046	NM_001111285.1	121	gtCCgt/gtTTgt																																																																														
MSI1	4440	MSKCC	GRCh37	12	120806065	120806065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	117	1056	1	ENST00000257552.2:c.112G>A	p.Glu38Lys	p.E38K	ENST00000257552	NM_002442.3	38	Gaa/Aaa																																																																														
POLE	5426	MSKCC	GRCh37	12	133242002	133242002	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	99	1031	0	ENST00000320574.5:c.2354T>G	p.Val785Gly	p.V785G	ENST00000320574	NM_006231.2	785	gTg/gGg																																																																														
RB1	5925	MSKCC	GRCh37	13	48947585	48947585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	38	1088	1	ENST00000267163.4:c.1172C>T	p.Ser391Leu	p.S391L	ENST00000267163	NM_000321.2	391	tCa/tTa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30194766	30194766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	84	1021	2	ENST00000331968.5:c.379G>A	p.Asp127Asn	p.D127N	ENST00000331968	NM_002742.2	127	Gat/Aat																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479786	67479786	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	95	883	2	ENST00000327367.4:c.1093C>T	p.Gln365Ter	p.Q365*	ENST00000327367	NM_005902.3	365	Cag/Tag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472453	88472453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	41	924	1	ENST00000360948.2:c.2102C>T	p.Ser701Phe	p.S701F	ENST00000360948	NM_001012338.2	701	tCc/tTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134252	2134253	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	75	994	1	ENST00000219476.3:c.4029_4030delinsAA	p.Glu1344Lys	p.E1344K	ENST00000219476	NM_000548.3	1343	gaGGag/gaAAag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3651052	3651052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	52	968	0	ENST00000294008.3:c.1091C>T	p.Pro364Leu	p.P364L	ENST00000294008	NM_032444.2	364	cCc/cTc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216608	7216608	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	77	722	0	ENST00000380728.2:c.727T>C	p.Phe243Leu	p.F243L	ENST00000380728		243	Ttc/Ctc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979010	7979010	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	100	1031	1	ENST00000319144.4:c.1557T>A	p.Tyr519Ter	p.Y519*	ENST00000319144	NM_001139.2	519	taT/taA																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453400	40453400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	131	1202	1	ENST00000345506.4:c.1097C>T	p.Pro366Leu	p.P366L	ENST00000345506	NM_003152.3	366	cCc/cTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215582	5215583	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	87	1003	2	ENST00000357368.4:c.4120_4121delinsTT	p.Pro1374Phe	p.P1374F	ENST00000357368	NM_002850.3	1374	CCc/TTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7184613	7184613	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	27	530	0	ENST00000302850.5:c.688G>C	p.Ala230Pro	p.A230P	ENST00000302850	NM_000208.2	230	Gcc/Ccc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602537	10602538	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	76	888	3	ENST00000171111.5:c.1040_1041delinsTT	p.Pro347Leu	p.P347L	ENST00000171111	NM_203500.1	347	cCC/cTT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212296	36212296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	87	996	1	ENST00000222270.7:c.2047C>T	p.Pro683Ser	p.P683S	ENST00000222270	NM_014727.1	683	Cct/Tct																																																																														
ERF	2077	MSKCC	GRCh37	19	42753315	42753315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	62	1254	1	ENST00000222329.4:c.949C>T	p.His317Tyr	p.H317Y	ENST00000222329	NM_006494.2	317	Cac/Tac																																																																														
CIC	23152	MSKCC	GRCh37	19	42791573	42791573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	70	954	0	ENST00000575354.2:c.554C>T	p.Ser185Phe	p.S185F	ENST00000575354	NM_015125.3	185	tCt/tTt																																																																														
CIC	23152	MSKCC	GRCh37	19	42793142	42793143	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	58	1071	4	ENST00000575354.2:c.1034_1035delinsAA	p.Gly345Glu	p.G345E	ENST00000575354	NM_015125.3	345	gGG/gAA																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965920	25965920	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	96	957	2	ENST00000435504.4:c.3286C>T	p.Gln1096Ter	p.Q1096*	ENST00000435504		1096	Cag/Tag																																																																														
CASP8	841	MSKCC	GRCh37	2	202131388	202131389	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	38	900	1	ENST00000358485.4:c.356_357delinsTT	p.Ser119Phe	p.S119F	ENST00000358485	NM_001080125.1	119	tCC/tTT																																																																														
INHA	3623	MSKCC	GRCh37	2	220437316	220437316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	92	1161	0	ENST00000243786.2:c.220C>T	p.Pro74Ser	p.P74S	ENST00000243786	NM_002191.3	74	Ccc/Tcc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023536	31023540	+	frameshift_variant	Frame_Shift_Del	DEL	TCACC	TCACC	-			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	71	805	0	ENST00000375687.4:c.3025_3029del	p.Leu1009GlyfsTer5	p.L1009Gfs*5	ENST00000375687	NM_015338.5	1007	ggTCACCtc/ggtc																																																																														
EP300	2033	MSKCC	GRCh37	22	41572329	41572329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	83	1130	1	ENST00000263253.7:c.4858C>T	p.Pro1620Ser	p.P1620S	ENST00000263253	NM_001429.3	1620	Ccc/Tcc																																																																														
RHOA	387	MSKCC	GRCh37	3	49412899	49412899	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	95	1162	1	ENST00000418115.1:c.124T>A	p.Tyr42Asn	p.Y42N	ENST00000418115	NM_001664.2	42	Tat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468387	89468387	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	69	531	0	ENST00000336596.2:c.1921A>C	p.Lys641Gln	p.K641Q	ENST00000336596	NM_005233.5	641	Aaa/Caa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960120	134960120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	79	954	0	ENST00000398015.3:c.2477G>A	p.Trp826Ter	p.W826*	ENST00000398015	NM_004441.4	826	tGg/tAg																																																																														
KDR	3791	MSKCC	GRCh37	4	55955939	55955939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	88	951	0	ENST00000263923.4:c.3223G>A	p.Glu1075Lys	p.E1075K	ENST00000263923	NM_002253.2	1075	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629061	187629061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	92	1081	0	ENST00000441802.2:c.1921C>T	p.His641Tyr	p.H641Y	ENST00000441802	NM_005245.3	641	Cac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112175609	112175609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	62	606	0	ENST00000257430.4:c.4318C>T	p.Pro1440Ser	p.P1440S	ENST00000257430	NM_000038.5	1440	Cca/Tca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150448	157150448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	88	944	0	ENST00000346085.5:c.1630C>T	p.Pro544Ser	p.P544S	ENST00000346085	NM_020732.3	544	Ccg/Tcg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2969694	2969694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	203	1032	0	ENST00000396946.4:c.1585G>A	p.Glu529Lys	p.E529K	ENST00000396946	NM_032415.4	529	Gaa/Aaa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946053	13946053	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	118	538	0	ENST00000405192.2:c.1041+2T>C		p.X347_splice	ENST00000405192	NM_001163147.1	347																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459435	50459435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	139	428	0	ENST00000331340.3:c.724G>A	p.Glu242Lys	p.E242K	ENST00000331340	NM_006060.4	242	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515187	106515187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	80	884	1	ENST00000359195.3:c.2330C>T	p.Ser777Phe	p.S777F	ENST00000359195	NM_002649.2	777	tCt/tTt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148524301	148524301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	88	949	0	ENST00000320356.2:c.683C>T	p.Ser228Phe	p.S228F	ENST00000320356	NM_004456.4	228	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874644	151874644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	75	727	0	ENST00000262189.6:c.7894C>T	p.Gln2632Ter	p.Q2632*	ENST00000262189	NM_170606.2	2632	Caa/Taa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68984737	68984737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	51	751	0	ENST00000288368.4:c.1501G>A	p.Asp501Asn	p.D501N	ENST00000288368	NM_024870.2	501	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	68989633	68989633	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	107	900	0	ENST00000288368.4:c.1571G>A	p.Gly524Glu	p.G524E	ENST00000288368	NM_024870.2	524	gGa/gAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341725	8341725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	204	1086	0	ENST00000356435.5:c.4915G>A	p.Glu1639Lys	p.E1639K	ENST00000356435		1639	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518087	8518087	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	124	872	0	ENST00000356435.5:c.1304T>C	p.Leu435Ser	p.L435S	ENST00000356435		435	tTg/tCg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137293489	137293489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	222	1217	1	ENST00000481739.1:c.40C>T	p.Gln14Ter	p.Q14*	ENST00000481739	NM_002957.4	14	Cag/Tag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393442	139393442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	179	954	3	ENST00000277541.6:c.6089C>T	p.Ser2030Phe	p.S2030F	ENST00000277541	NM_017617.3	2030	tCc/tTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412268	63412268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	105	576	0	ENST00000330258.3:c.899C>T	p.Pro300Leu	p.P300L	ENST00000330258	NM_152424.3	300	cCa/cTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0020146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	52	609	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0020146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	147	713	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
CASP8	841	MSKCC	GRCh37	2	202141586	202141586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	123	835	0	ENST00000358485.4:c.874C>T	p.Arg292Trp	p.R292W	ENST00000358485	NM_001080125.1	292	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	215	593	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	215	593	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	196	855	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	215	593	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206658589	206658589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	56	787	0	ENST00000367120.3:c.1562G>A	p.Ser521Asn	p.S521N	ENST00000367120	NM_014002.3	521	aGc/aAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29552174	29552174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	54	651	0	ENST00000358273.4:c.1907C>T	p.Ser636Phe	p.S636F	ENST00000358273	NM_001042492.2	636	tCt/tTt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681060	37681060	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	89	806	1	ENST00000447079.4:c.3229G>T	p.Glu1077Ter	p.E1077*	ENST00000447079	NM_015083.1	1077	Gag/Tag																																																																														
TP63	8626	MSKCC	GRCh37	3	189604240	189604240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	158	933	1	ENST00000264731.3:c.1407G>A	p.Met469Ile	p.M469I	ENST00000264731	NM_003722.4	469	atG/atA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187560905	187560905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	89	751	0	ENST00000441802.2:c.3613C>T	p.Arg1205Ter	p.R1205*	ENST00000441802	NM_005245.3	1205	Cga/Tga																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946060	13946060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	66	520	0	ENST00000405192.2:c.1036G>A	p.Glu346Lys	p.E346K	ENST00000405192	NM_001163147.1	346	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	420	875	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	243	557	0				ENST00000310581	NM_198253.2																																																																																
PAK7	57144	MSKCC	GRCh37	20	9538374	9538374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	187	517	0	ENST00000353224.5:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000353224	NM_177990.2	542	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76872105	76872105	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	193	835	0	ENST00000373344.5:c.5542C>T	p.Gln1848Ter	p.Q1848*	ENST00000373344	NM_000489.3	1848	Cag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76939031	76939031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	183	835	1	ENST00000373344.5:c.1717G>T	p.Gly573Cys	p.G573C	ENST00000373344	NM_000489.3	573	Ggt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421078	49421078	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	164	729	2	ENST00000301067.7:c.14671C>T	p.Gln4891Ter	p.Q4891*	ENST00000301067	NM_003482.3	4891	Cag/Tag																																																																														
NUF2	83540	MSKCC	GRCh37	1	163297306	163297306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	175	869	0	ENST00000271452.3:c.152G>C	p.Arg51Thr	p.R51T	ENST00000271452	NM_145697.2	51	aGa/aCa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211669	46211669	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	125	470	0	ENST00000334344.6:c.635A>G	p.Asp212Gly	p.D212G	ENST00000334344	NM_152641.2	212	gAc/gGc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624949	9624949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	53	417	0	ENST00000353224.5:c.28G>C	p.Glu10Gln	p.E10Q	ENST00000353224	NM_177990.2	10	Gaa/Caa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170009685	170009685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	550	680	0	ENST00000295797.4:c.1247C>T	p.Thr416Ile	p.T416I	ENST00000295797	NM_002740.5	416	aCt/aTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230855	66230855	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	168	644	0	ENST00000273854.3:c.2116A>T	p.Ile706Phe	p.I706F	ENST00000273854	NM_004439.5	706	Atc/Ttc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628172	187628172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	102	1077	0	ENST00000441802.2:c.2810G>A	p.Arg937Gln	p.R937Q	ENST00000441802	NM_005245.3	937	cGa/cAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170036	32170036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	241	1134	0	ENST00000375023.3:c.3572G>C	p.Cys1191Ser	p.C1191S	ENST00000375023	NM_004557.3	1191	tGc/tCc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969086	93969086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	98	491	1	ENST00000369303.4:c.1910G>A	p.Arg637His	p.R637H	ENST00000369303	NM_004440.3	637	cGt/cAt																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38187174	38187174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	102	1044	1	ENST00000317025.8:c.1303G>T	p.Ala435Ser	p.A435S	ENST00000317025	NM_023034.1	435	Gca/Tca																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370918	55370918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	225	902	2	ENST00000297316.4:c.220G>A	p.Ala74Thr	p.A74T	ENST00000297316	NM_022454.3	74	Gct/Act																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020426	69020426	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	218	953	0	ENST00000288368.4:c.2798T>A	p.Phe933Tyr	p.F933Y	ENST00000288368	NM_024870.2	933	tTc/tAc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878843	117878843	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	146	605	0	ENST00000297338.2:c.126G>C	p.Glu42Asp	p.E42D	ENST00000297338	NM_006265.2	42	gaG/gaC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCGTGGAGCAGCAGCA			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	30	598	0	ENST00000304494.5:c.185_201dup	p.Ala68CysfsTer84	p.A68Cfs*84	ENST00000304494	NM_000077.4	67	-/TGCTGCTGCTCCACGGC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCGTGGAGCAGCAGCA			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	30	598	0	ENST00000304494.5:c.185_201dup	p.Ala68CysfsTer84	p.A68Cfs*84	ENST00000304494	NM_000077.4	67	-/TGCTGCTGCTCCACGGC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCGTGGAGCAGCAGCA			P-0020156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	30	598	0	ENST00000304494.5:c.185_201dup	p.Ala68CysfsTer84	p.A68Cfs*84	ENST00000304494	NM_000077.4	67	-/TGCTGCTGCTCCACGGC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	100	477	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	217	933	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984448	201984449	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	437	776	0	ENST00000359651.3:c.1114dup	p.Ter372LeufsTer99	p.*372Lfs*99	ENST00000359651		371	-/T																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428616	49428616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	73	1152	0	ENST00000301067.7:c.10334G>A	p.Gly3445Glu	p.G3445E	ENST00000301067	NM_003482.3	3445	gGg/gAg																																																																														
RARA	5914	MSKCC	GRCh37	17	38504625	38504625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	172	1120	1	ENST00000254066.5:c.236C>T	p.Pro79Leu	p.P79L	ENST00000254066	NM_000964.3	79	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295295	1295295	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0020542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	168	859	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652087	36652088	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	297	1065	0	ENST00000244741.5:c.211dup	p.Leu71ProfsTer18	p.L71Pfs*18	ENST00000244741	NM_000389.4	70	ggc/ggCc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176132087	176132087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	131	818	0	ENST00000367669.3:c.680G>T	p.Gly227Val	p.G227V	ENST00000367669	NM_022457.5	227	gGa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426082	49426082	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	252	841	0	ENST00000301067.7:c.12406C>T	p.Gln4136Ter	p.Q4136*	ENST00000301067	NM_003482.3	4136	Cag/Tag																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589316	28589316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	229	658	0	ENST00000241453.7:c.2731C>A	p.Pro911Thr	p.P911T	ENST00000241453	NM_004119.2	911	Cca/Aca																																																																														
MGA	23269	MSKCC	GRCh37	15	41961930	41961930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	72	489	0	ENST00000219905.7:c.838G>C	p.Glu280Gln	p.E280Q	ENST00000219905	NM_001164273.1	280	Gaa/Caa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50816240	50816241	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGA			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	69	362	0	ENST00000398568.2:c.1683_1685dup	p.Gly562dup	p.G562dup	ENST00000398568	NM_001042412.1	562	-/GGA																																																																														
TP53	7157	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	540	792	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																														
AXL	558	MSKCC	GRCh37	19	41726726	41726726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	129	865	2	ENST00000301178.4:c.271G>A	p.Asp91Asn	p.D91N	ENST00000301178	NM_021913.4	91	Gat/Aat																																																																														
XPO1	7514	MSKCC	GRCh37	2	61760992	61760992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	30	623	0	ENST00000401558.2:c.41G>A	p.Arg14His	p.R14H	ENST00000401558	NM_003400.3	14	cGt/cAt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021380	31021381	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	203	593	1	ENST00000375687.4:c.1379_1380delinsCT	p.Gly460Ala	p.G460A	ENST00000375687	NM_015338.5	460	gGG/gCT																																																																														
EP300	2033	MSKCC	GRCh37	22	41566510	41566510	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	314	617	0	ENST00000263253.7:c.4387C>G	p.Leu1463Val	p.L1463V	ENST00000263253	NM_001429.3	1463	Ctg/Gtg																																																																														
KIT	3815	MSKCC	GRCh37	4	55602743	55602743	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	84	606	0	ENST00000288135.5:c.2564A>T	p.Tyr855Phe	p.Y855F	ENST00000288135	NM_000222.2	855	tAt/tTt																																																																														
TET2	54790	MSKCC	GRCh37	4	106157188	106157188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	186	524	0	ENST00000380013.4:c.2089C>A	p.Pro697Thr	p.P697T	ENST00000380013	NM_001127208.2	697	Cca/Aca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295204	1295204	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	71	405	0				ENST00000310581	NM_198253.2																																																																																
HLA-B	3106	MSKCC	GRCh37	6	31323175	31323175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	276	746	0	ENST00000412585.2:c.814del	p.Val272TrpfsTer25	p.V272Wfs*25	ENST00000412585	NM_005514.6	272	Gtg/tg																																																																														
BRAF	673	MSKCC	GRCh37	7	140500278	140500278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	119	418	0	ENST00000288602.6:c.864G>T	p.Leu288Phe	p.L288F	ENST00000288602	NM_004333.4	288	ttG/ttT																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021697	69021697	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	176	653	0	ENST00000288368.4:c.2985G>C	p.Met995Ile	p.M995I	ENST00000288368	NM_024870.2	995	atG/atC																																																																														
JAK2	3717	MSKCC	GRCh37	9	5022105	5022105	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	43	768	0	ENST00000381652.3:c.118C>A	p.Gln40Lys	p.Q40K	ENST00000381652	NM_004972.3	40	Cag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	191	557	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	191	557	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	191	557	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249881	110249881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	457	683	1	ENST00000374672.4:c.794C>T	p.Pro265Leu	p.P265L	ENST00000374672	NM_004235.4	265	cCc/cTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405258	139405258	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	255	704	0	ENST00000277541.6:c.2588-1G>A		p.X863_splice	ENST00000277541	NM_017617.3	863																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	471	202	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0020720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	296	459	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	307	465	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	307	465	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	307	465	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145740809	145740809	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	510	850	2	ENST00000428558.2:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000428558	NM_004260.3	431	Gag/Tag																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15821914	15821914	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	336	305	1	ENST00000307771.7:c.307C>T	p.Gln103Ter	p.Q103*	ENST00000307771	NM_005089.3	103	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020803-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	209	573	0	ENST00000269305.4:c.97-1G>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242481	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCAA	GAATTAAGAGAAGCAA	ATTC			P-0020803-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			404	99	518	1	ENST00000275493.2:c.2236_2251delinsATTC	p.Glu746_Thr751delinsIlePro	p.E746_T751delinsIP	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCAAca/ATTCca																																																																														
MED12	9968	MSKCC	GRCh37	X	70352389	70352389	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0020803-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			373	172	522	1	ENST00000374080.3:c.4415+1G>C		p.X1472_splice	ENST00000374080		1472																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	367	988	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	297	1071	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953883	32953884	+	splice_region_variant,intron_variant	Splice_Region	DEL	AC	AC	-			P-0020841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	132	587	0	ENST00000380152.3:c.8954-3_8954-2del		p.X2985_splice	ENST00000380152		2985																																																																															
CD276	80381	MSKCC	GRCh37	15	74005292	74005292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	93	921	1	ENST00000318443.5:c.1600G>A	p.Ala534Thr	p.A534T	ENST00000318443	NM_001024736.1	534	Gcc/Acc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971176	21971200	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGCCACTCGGGCGCTGCCCATCA	TCCGCCACTCGGGCGCTGCCCATCA	-			P-0020841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	271	795	0	ENST00000304494.5:c.158_182del	p.Met53SerfsTer85	p.M53Sfs*85	ENST00000304494	NM_000077.4	53	aTGATGGGCAGCGCCCGAGTGGCGGAg/ag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971176	21971200	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGCCACTCGGGCGCTGCCCATCA	TCCGCCACTCGGGCGCTGCCCATCA	-			P-0020841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	271	795	0	ENST00000304494.5:c.158_182del	p.Met53SerfsTer85	p.M53Sfs*85	ENST00000304494	NM_000077.4	53	aTGATGGGCAGCGCCCGAGTGGCGGAg/ag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971176	21971200	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGCCACTCGGGCGCTGCCCATCA	TCCGCCACTCGGGCGCTGCCCATCA	-			P-0020841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	271	795	0	ENST00000304494.5:c.158_182del	p.Met53SerfsTer85	p.M53Sfs*85	ENST00000304494	NM_000077.4	53	aTGATGGGCAGCGCCCGAGTGGCGGAg/ag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0020846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	31	899	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	117	855	3	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	117	855	3	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0020846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	93	804	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	117	855	3	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
SUFU	51684	MSKCC	GRCh37	10	104386947	104386947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	36	576	0	ENST00000369902.3:c.1312G>C	p.Glu438Gln	p.E438Q	ENST00000369902	NM_016169.3	438	Gag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	267	769	0				ENST00000310581	NM_198253.2																																																																																
FLT1	2321	MSKCC	GRCh37	13	28893589	28893589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	261	691	0	ENST00000282397.4:c.3257G>A	p.Gly1086Glu	p.G1086E	ENST00000282397	NM_002019.4	1086	gGa/gAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041073	29041073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	191	791	1	ENST00000282397.4:c.355G>A	p.Glu119Lys	p.E119K	ENST00000282397	NM_002019.4	119	Gaa/Aaa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729613	41729613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	266	684	0	ENST00000242208.4:c.916C>T	p.Arg306Cys	p.R306C	ENST00000242208	NM_002192.2	306	Cgc/Tgc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631935	90631935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	454	1050	1	ENST00000330062.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000330062	NM_002168.2	140	Cgg/Tgg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546769	9546769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	235	369	0	ENST00000353224.5:c.1253C>T	p.Ser418Phe	p.S418F	ENST00000353224	NM_177990.2	418	tCc/tTc																																																																														
CBL	867	MSKCC	GRCh37	11	119149002	119149002	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	371	800	3	ENST00000264033.4:c.1222T>C	p.Trp408Arg	p.W408R	ENST00000264033	NM_005188.3	408	Tgg/Cgg																																																																														
CCND2	894	MSKCC	GRCh37	12	4409089	4409089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	150	533	1	ENST00000261254.3:c.784C>T	p.Arg262Cys	p.R262C	ENST00000261254	NM_001759.3	262	Cgt/Tgt																																																																														
HGF	3082	MSKCC	GRCh37	7	81381514	81381514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	165	526	0	ENST00000222390.5:c.547G>A	p.Glu183Lys	p.E183K	ENST00000222390	NM_000601.4	183	Gaa/Aaa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459890	149459890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	345	932	2	ENST00000286301.3:c.317G>A	p.Arg106Gln	p.R106Q	ENST00000286301	NM_005211.3	106	cGg/cAg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560824	9560824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	185	667	0	ENST00000353224.5:c.958C>T	p.Arg320Cys	p.R320C	ENST00000353224	NM_177990.2	320	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	392	743	1	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	392	743	1	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	392	743	1	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992729	68992729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	314	1050	2	ENST00000288368.4:c.1694C>T	p.Ser565Leu	p.S565L	ENST00000288368	NM_024870.2	565	tCg/tTg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	135	781	3	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937983	36937983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	455	1115	1	ENST00000361632.4:c.853C>T	p.Leu285Phe	p.L285F	ENST00000361632		285	Ctc/Ttc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980421	201980421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	387	846	1	ENST00000359651.3:c.157G>A	p.Gly53Ser	p.G53S	ENST00000359651		53	Ggt/Agt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691123	18691123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	64	781	1	ENST00000266497.5:c.3234G>A	p.Met1078Ile	p.M1078I	ENST00000266497		1078	atG/atA																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432034	121432034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	392	1224	0	ENST00000257555.6:c.781G>A	p.Glu261Lys	p.E261K	ENST00000257555		261	Gag/Aag																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281117	49281117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	192	1299	1	ENST00000282018.3:c.164G>A	p.Gly55Glu	p.G55E	ENST00000282018	NM_020377.2	55	gGa/gAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779008	3779008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	237	753	0	ENST00000262367.5:c.6040C>T	p.Pro2014Ser	p.P2014S	ENST00000262367	NM_004380.2	2014	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858073	9858073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	380	867	0	ENST00000330684.3:c.3328T>C	p.Ser1110Pro	p.S1110P	ENST00000330684	NM_001134407.1	1110	Tca/Cca																																																																														
CDH1	999	MSKCC	GRCh37	16	68842719	68842719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	363	854	0	ENST00000261769.5:c.655C>G	p.Pro219Ala	p.P219A	ENST00000261769	NM_004360.3	219	Cct/Gct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828116	72828116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	357	981	0	ENST00000268489.5:c.8465A>G	p.Asn2822Ser	p.N2822S	ENST00000268489	NM_006885.3	2822	aAt/aGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993263	72993263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	502	1234	1	ENST00000268489.5:c.782C>T	p.Pro261Leu	p.P261L	ENST00000268489	NM_006885.3	261	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29554546	29554546	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	110	312	0	ENST00000358273.4:c.2331G>A	p.Trp777Ter	p.W777*	ENST00000358273	NM_001042492.2	777	tgG/tgA																																																																														
NF1	4763	MSKCC	GRCh37	17	29685994	29685994	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	95	651	0	ENST00000358273.4:c.8124del	p.Phe2708LeufsTer31	p.F2708Lfs*31	ENST00000358273	NM_001042492.2	2707	ggT/gg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5273456	5273457	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	291	954	3	ENST00000357368.4:c.375_376delinsTT	p.Arg126Ter	p.R126*	ENST00000357368	NM_002850.3	125	ctCCga/ctTTga																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19261516	19261516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	358	1002	2	ENST00000162023.5:c.29G>A	p.Arg10His	p.R10H	ENST00000162023		10	cGc/cAc																																																																														
AXL	558	MSKCC	GRCh37	19	41743963	41743963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	378	1306	0	ENST00000301178.4:c.898C>T	p.His300Tyr	p.H300Y	ENST00000301178	NM_021913.4	300	Cat/Tat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198270187	198270187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	92	438	1	ENST00000335508.6:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000335508	NM_012433.2	417	Cct/Tct																																																																														
INHA	3623	MSKCC	GRCh37	2	220437158	220437158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs75409408		P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	240	1194	1	ENST00000243786.2:c.62G>A	p.Gly21Glu	p.G21E	ENST00000243786	NM_002191.3	21	gGg/gAg																																																																														
EP300	2033	MSKCC	GRCh37	22	41573354	41573354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	449	1047	2	ENST00000263253.7:c.5639C>T	p.Pro1880Leu	p.P1880L	ENST00000263253	NM_001429.3	1880	cCc/cTc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37061814	37061814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	307	709	0	ENST00000231790.2:c.898C>T	p.Pro300Ser	p.P300S	ENST00000231790	NM_000249.3	300	Ccc/Tcc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164177	47164177	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	83	604	0	ENST00000409792.3:c.1949del	p.Lys650ArgfsTer3	p.K650Rfs*3	ENST00000409792	NM_014159.6	650	aAg/ag																																																																														
RHOA	387	MSKCC	GRCh37	3	49405914	49405914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	426	953	0	ENST00000418115.1:c.224C>T	p.Pro75Leu	p.P75L	ENST00000418115	NM_001664.2	75	cCa/cTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480384	89480384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	101	425	0	ENST00000336596.2:c.2221G>A	p.Gly741Ser	p.G741S	ENST00000336596	NM_005233.5	741	Ggc/Agc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825359	134825359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	321	629	0	ENST00000398015.3:c.875G>A	p.Arg292His	p.R292H	ENST00000398015	NM_004441.4	292	cGc/cAc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185161272	185161272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	403	1046	2	ENST00000265026.3:c.699G>A	p.Met233Ile	p.M233I	ENST00000265026	NM_004721.4	233	atG/atA																																																																														
TP63	8626	MSKCC	GRCh37	3	189607251	189607251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	226	1042	0	ENST00000264731.3:c.1630C>T	p.Pro544Ser	p.P544S	ENST00000264731	NM_003722.4	544	Ccc/Tcc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749407	41749407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	236	634	0	ENST00000226382.2:c.388G>A	p.Glu130Lys	p.E130K	ENST00000226382	NM_003924.3	130	Gag/Aag																																																																														
TET2	54790	MSKCC	GRCh37	4	106156487	106156487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	115	597	0	ENST00000380013.4:c.1388C>T	p.Pro463Leu	p.P463L	ENST00000380013	NM_001127208.2	463	cCt/cTt																																																																														
TET2	54790	MSKCC	GRCh37	4	106196349	106196349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	159	528	1	ENST00000380013.4:c.4682C>T	p.Ser1561Phe	p.S1561F	ENST00000380013	NM_001127208.2	1561	tCt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1293690	1293691	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	176	1069	2	ENST00000310581.5:c.1310_1311delinsTT	p.Ala437Val	p.A437V	ENST00000310581	NM_198253.2	437	gCC/gTT																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056376	180056376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	196	932	1	ENST00000261937.6:c.868G>A	p.Glu290Lys	p.E290K	ENST00000261937	NM_182925.4	290	Gaa/Aaa																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271584	26271584	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	201	528	1	ENST00000305910.3:c.29A>T	p.Lys10Met	p.K10M	ENST00000305910	NM_003534.2	10	aAg/aTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672612	30672613	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	346	956	1	ENST00000376406.3:c.4347_4348delinsTT	p.Pro1450Ser	p.P1450S	ENST00000376406	NM_014641.2	1449	gtCCcc/gtTTcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120270	94120270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	190	429	0	ENST00000369303.4:c.781G>A	p.Gly261Arg	p.G261R	ENST00000369303	NM_004440.3	261	Gga/Aga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641144	117641144	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	369	1013	1	ENST00000368508.3:c.5827G>T	p.Glu1943Ter	p.E1943*	ENST00000368508	NM_002944.2	1943	Gaa/Taa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367248	50367248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	182	528	1	ENST00000331340.3:c.55C>T	p.Pro19Ser	p.P19S	ENST00000331340	NM_006060.4	19	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	68939502	68939502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	86	772	1	ENST00000288368.4:c.487G>A	p.Glu163Lys	p.E163K	ENST00000288368	NM_024870.2	163	Gaa/Aaa																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	144	621	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	116	563	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	257	619	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696435	47696435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	170	653	0	ENST00000347630.2:c.388G>C	p.Asp130His	p.D130H	ENST00000347630	NM_001007230.1	130	Gac/Cac																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733218	74733218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	150	625	0	ENST00000359995.5:c.25G>A	p.Asp9Asn	p.D9N	ENST00000359995	NM_001195427.1	9	Gat/Aat																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652035	36652035	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	184	906	0	ENST00000244741.5:c.159del	p.Phe53LeufsTer95	p.F53Lfs*95	ENST00000244741	NM_000389.4	53	Ttt/tt																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870984	12870984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	88	360	0	ENST00000228872.4:c.211G>C	p.Glu71Gln	p.E71Q	ENST00000228872	NM_004064.3	71	Gag/Cag																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871042	12871042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	84	344	0	ENST00000228872.4:c.269G>C	p.Arg90Thr	p.R90T	ENST00000228872	NM_004064.3	90	aGa/aCa																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871104	12871104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	71	277	0	ENST00000228872.4:c.331G>C	p.Gly111Arg	p.G111R	ENST00000228872	NM_004064.3	111	Ggg/Cgg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861958	57861958	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	171	579	0	ENST00000228682.2:c.1259G>C	p.Gly420Ala	p.G420A	ENST00000228682	NM_005269.2	420	gGa/gCa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99459238	99459238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	243	813	0	ENST00000268035.6:c.1874C>T	p.Ser625Phe	p.S625F	ENST00000268035	NM_000875.3	625	tCt/tTt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46275928	46275928	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	183	776	0	ENST00000371998.3:c.3364A>G	p.Met1122Val	p.M1122V	ENST00000371998		1122	Atg/Gtg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295176	1295176	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	82	365	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295311	1295311	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	170	760	0				ENST00000310581	NM_198253.2																																																																																
ATRX	546	MSKCC	GRCh37	X	76937759	76937759	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	141	698	0	ENST00000373344.5:c.2989G>C	p.Asp997His	p.D997H	ENST00000373344	NM_000489.3	997	Gac/Cac																																																																														
ATRX	546	MSKCC	GRCh37	X	76938911	76938911	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	183	755	0	ENST00000373344.5:c.1837G>C	p.Asp613His	p.D613H	ENST00000373344	NM_000489.3	613	Gat/Cat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	111	722	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	16	569	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MED12	9968	MSKCC	GRCh37	X	70344018	70344018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	175	1004	2	ENST00000374080.3:c.1754G>A	p.Arg585Gln	p.R585Q	ENST00000374080		585	cGa/cAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	360	966	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	90	746	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	154	817	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	174	997	1	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849887	156849887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	228	1038	2	ENST00000524377.1:c.2143G>A	p.Val715Met	p.V715M	ENST00000524377	NM_002529.3	715	Gtg/Atg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	163	1155	9	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	151	644	13	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
ERG	2078	MSKCC	GRCh37	21	39772564	39772564	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	111	521	0	ENST00000288319.7:c.677delG	p.Gly226ValfsTer65	p.G226Vfs*65	ENST00000288319	NM_182918.3	226	gGt/gt																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	141	745	17	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	239	1189	2	ENST00000301030.4:c.4382_4384delAGA	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777134	9777134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	193	1052	1	ENST00000377346.4:c.898C>T	p.Arg300Cys	p.R300C	ENST00000377346	NM_005026.3	300	Cgt/Tgt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100462	8100462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	183	998	2	ENST00000346208.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000346208		146	Gcc/Acc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54963247	54963247	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	102	546	3	ENST00000312783.6:c.7C>T	p.Arg3Ter	p.R3*	ENST00000312783	NM_198436.1	3	Cga/Tga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	150	803	2	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																														
CD274	29126	MSKCC	GRCh37	9	5466787	5466787	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	81	291	0	ENST00000381577.3:c.813del	p.Lys271AsnfsTer44	p.K271Nfs*44	ENST00000381577	NM_014143.3	270	Aaa/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991709	72991711	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	64	210	10	ENST00000268489.5:c.2334_2336delTGC	p.Ala784del	p.A784del	ENST00000268489	NM_006885.3	778	gcTGCg/gcg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354393	354393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	245	1017	1	ENST00000262320.3:c.1165G>A	p.Ala389Thr	p.A389T	ENST00000262320	NM_003502.3	389	Gcg/Acg																																																																														
PGR	5241	MSKCC	GRCh37	11	100962610	100962610	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	108	584	0	ENST00000325455.5:c.1790-3del		p.X597_splice	ENST00000325455	NM_001202474.3	597																																																																															
XPO1	7514	MSKCC	GRCh37	2	61726051	61726052	+	splice_region_variant,intron_variant	Splice_Region	DEL	AA	AA	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	101	485	1	ENST00000401558.2:c.591-4_591-3delTT		p.X197_splice	ENST00000401558	NM_003400.3	197																																																																															
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	205	949	12	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	11	50	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																														
RET	5979	MSKCC	GRCh37	10	43615143	43615143	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	62	1051	1	ENST00000355710.3:c.2557T>A	p.Ser853Thr	p.S853T	ENST00000355710	NM_020975.4	853	Tca/Aca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	118	630	1	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																														
SDHA	6389	MSKCC	GRCh37	5	228384	228384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	116	582	0	ENST00000264932.6:c.706G>A	p.Ala236Thr	p.A236T	ENST00000264932	NM_004168.2	236	Gca/Aca																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78923344	78923344	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	119	644	0	ENST00000306801.3:c.3367C>T	p.Arg1123Ter	p.R1123*	ENST00000306801	NM_020761.2	1123	Cga/Tga																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38631981	38631981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	167	1083	3	ENST00000299084.4:c.471delT	p.Gln158SerfsTer16	p.Q158Sfs*16	ENST00000299084	NM_152594.2	156	cTt/ct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391778	139391778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	162	933	2	ENST00000277541.6:c.6413C>T	p.Pro2138Leu	p.P2138L	ENST00000277541	NM_017617.3	2138	cCg/cTg																																																																														
PARP1	142	MSKCC	GRCh37	1	226552705	226552705	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	88	498	0	ENST00000366794.5:c.2656G>A	p.Val886Met	p.V886M	ENST00000366794	NM_001618.3	886	Gtg/Atg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104264048	104264048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	206	877	0	ENST00000369902.3:c.139G>A	p.Asp47Asn	p.D47N	ENST00000369902	NM_016169.3	47	Gac/Aac																																																																														
PGR	5241	MSKCC	GRCh37	11	100999225	100999225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	216	941	0	ENST00000325455.5:c.577C>T	p.Arg193Trp	p.R193W	ENST00000325455	NM_001202474.3	193	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108143330	108143330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	119	680	0	ENST00000278616.4:c.3149T>C	p.Leu1050Pro	p.L1050P	ENST00000278616	NM_000051.3	1050	cTt/cCt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864355	57864355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	173	935	1	ENST00000228682.2:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000228682	NM_005269.2	611	cGg/cAg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347947	73347947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	64	362	0	ENST00000377767.4:c.1114C>G	p.Leu372Val	p.L372V	ENST00000377767	NM_014953.3	372	Ctc/Gtc																																																																														
MGA	23269	MSKCC	GRCh37	15	42019540	42019540	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	160	996	1	ENST00000219905.7:c.3593T>C	p.Val1198Ala	p.V1198A	ENST00000219905	NM_001164273.1	1198	gTg/gCg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881303	37881303	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	184	929	0	ENST00000269571.5:c.2495G>T	p.Gly832Val	p.G832V	ENST00000269571		832	gGg/gTg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349246	15349246	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	140	712	0	ENST00000263377.2:c.4031C>G	p.Thr1344Ser	p.T1344S	ENST00000263377	NM_058243.2	1344	aCc/aGc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260156	19260156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	192	1005	0	ENST00000162023.5:c.137T>C	p.Ile46Thr	p.I46T	ENST00000162023		46	aTc/aCc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222938	36222938	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	245	1135	1	ENST00000222270.7:c.5572delC	p.Arg1858ValfsTer37	p.R1858Vfs*37	ENST00000222270	NM_014727.1	1856	gCc/gc																																																																														
ALK	238	MSKCC	GRCh37	2	30142939	30142939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	223	1155	1	ENST00000389048.3:c.587C>T	p.Ser196Leu	p.S196L	ENST00000389048	NM_004304.4	196	tCg/tTg																																																																														
ALK	238	MSKCC	GRCh37	2	30143212	30143212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	156	647	1	ENST00000389048.3:c.314C>T	p.Ala105Val	p.A105V	ENST00000389048	NM_004304.4	105	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524960	187524960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	176	910	1	ENST00000441802.2:c.10720G>A	p.Val3574Met	p.V3574M	ENST00000441802	NM_005245.3	3574	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1294565	1294565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	185	721	0	ENST00000310581.5:c.436G>A	p.Asp146Asn	p.D146N	ENST00000310581	NM_198253.2	146	Gac/Aac																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751213	57751213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	129	587	0	ENST00000274289.3:c.1654C>T	p.Gln552Ter	p.Q552*	ENST00000274289	NM_006622.3	552	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112173849	112173849	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	94	568	0	ENST00000257430.4:c.2558A>G	p.Glu853Gly	p.E853G	ENST00000257430	NM_000038.5	853	gAg/gGg																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839708	27839708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	140	745	4	ENST00000328488.2:c.386G>A	p.Arg129His	p.R129H	ENST00000328488	NM_003533.2	129	cGc/cAc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969165	93969165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	137	680	2	ENST00000369303.4:c.1831C>A	p.Pro611Thr	p.P611T	ENST00000369303	NM_004440.3	611	Cct/Act																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459537	50459537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	136	568	0	ENST00000331340.3:c.826A>G	p.Ser276Gly	p.S276G	ENST00000331340	NM_006060.4	276	Agc/Ggc																																																																														
SMO	6608	MSKCC	GRCh37	7	128829122	128829122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	24	44	0	ENST00000249373.3:c.130G>A	p.Ala44Thr	p.A44T	ENST00000249373	NM_005631.4	44	Gcg/Acg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371725	55371725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	206	750	4	ENST00000297316.4:c.415C>T	p.Pro139Ser	p.P139S	ENST00000297316	NM_022454.3	139	Ccg/Tcg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759607	133759607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	200	1057	0	ENST00000318560.5:c.1930G>A	p.Gly644Arg	p.G644R	ENST00000318560	NM_005157.4	644	Ggg/Agg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411521	63411521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	212	1047	0	ENST00000330258.3:c.1646G>A	p.Arg549Gln	p.R549Q	ENST00000330258	NM_152424.3	549	cGg/cAg																																																																														
BTK	695	MSKCC	GRCh37	X	100608924	100608924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	64	833	1	ENST00000308731.7:c.1684C>T	p.Arg562Trp	p.R562W	ENST00000308731	NM_000061.2	562	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	196	660	2	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954915	2954915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	577	626	2	ENST00000396946.4:c.2795G>T	p.Arg932Leu	p.R932L	ENST00000396946	NM_032415.4	932	cGg/cTg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39638005	39638005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	303	480	0	ENST00000262039.4:c.2422C>T	p.His808Tyr	p.H808Y	ENST00000262039	NM_002647.2	808	Cac/Tac																																																																														
RB1	5925	MSKCC	GRCh37	13	48923102	48923102	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	257	333	0	ENST00000267163.4:c.550G>T	p.Glu184Ter	p.E184*	ENST00000267163	NM_000321.2	184	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108202634	108202634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	227	384	0	ENST00000278616.4:c.7658C>A	p.Pro2553His	p.P2553H	ENST00000278616	NM_000051.3	2553	cCc/cAc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125503222	125503222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	88	276	1	ENST00000428830.2:c.589G>A	p.Val197Ile	p.V197I	ENST00000428830	NM_001114121.2	197	Gta/Ata																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644940	67644940	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	388	488	0	ENST00000264010.4:c.205A>T	p.Thr69Ser	p.T69S	ENST00000264010	NM_006565.3	69	Acc/Tcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224517	36224517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	264	890	1	ENST00000222270.7:c.6979A>G	p.Lys2327Glu	p.K2327E	ENST00000222270	NM_014727.1	2327	Aaa/Gaa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128028917	128028917	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	158	513	0	ENST00000285398.2:c.1940A>T	p.Lys647Ile	p.K647I	ENST00000285398	NM_000122.1	647	aAa/aTa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098936	178098936	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	264	364	0	ENST00000397062.3:c.109T>G	p.Phe37Val	p.F37V	ENST00000397062	NM_006164.4	37	Ttt/Gtt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225379374	225379375	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	353	573	0	ENST00000264414.4:c.493_494del	p.Leu165IlefsTer37	p.L165Ifs*37	ENST00000264414	NM_003590.4	165	CTa/a																																																																														
GNAS	2778	MSKCC	GRCh37	20	57474003	57474003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	243	340	0	ENST00000371085.3:c.220G>A	p.Glu74Lys	p.E74K	ENST00000371085	NM_000516.4	74	Gaa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142212009	142212009	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	316	492	0	ENST00000350721.4:c.6043A>T	p.Asn2015Tyr	p.N2015Y	ENST00000350721	NM_001184.3	2015	Aac/Tac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535413	187535413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	425	466	0	ENST00000441802.2:c.9161C>G	p.Ser3054Cys	p.S3054C	ENST00000441802	NM_005245.3	3054	tCt/tGt																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045769	26045769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			148	245	337	0	ENST00000540144.1:c.131C>A	p.Pro44Gln	p.P44Q	ENST00000540144	NM_003531.2	44	cCg/cAg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509848	106509848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	565	615	0	ENST00000359195.3:c.1842G>T	p.Arg614Ser	p.R614S	ENST00000359195	NM_002649.2	614	agG/agT																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127920550	127920550	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			754	178	542	0	ENST00000373547.4:c.349A>G	p.Arg117Gly	p.R117G	ENST00000373547	NM_002721.4	117	Aga/Gga																																																																														
ABL1	25	MSKCC	GRCh37	9	133760307	133760307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			670	168	552	0	ENST00000318560.5:c.2630G>T	p.Arg877Met	p.R877M	ENST00000318560	NM_005157.4	877	aGg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27086255	27087277	+	intron_variant	Intron	DEL	CCAAGTTCTCACTGAAAAACATAAAAGCTGGGAAAAAAACAGAATTTGTTCAATTGGCAAACATTTGTTGATTACTGTTATAGACCAGGTGTTAGGAGTGTAGTCCCAGACCTTCTTGGCAGTTAAGAAATTGTCTTTCTCATCCAATGTCTCTCTTTCTTACCTCCTACCCCTTATGTTGCAAAGTATGGTGACTTGGAGTGAGTCCTTGGCAAATGGAGGCTGTGATAATCTATAGTAATAATCATCATTGTAATATATAATAGAAGGAGAGGGGATCTATAAATGTTTCCCAAACTTGTTAACATTCTCTTGTAGCTCCTGGTGCCATCCTGGCAGCATTTTGTAAAGTTTTGCTATTAGAAAAGAACTAAAGCCTCACTGAAATAGTTGCTTTCTTATGACTGTAGAAGTTATGACTGGGAAAGAAGACAAAAGTGCTAGATCTGCTTCTGAGGGGATAGAATAGGAGTCAGCAAAACTCAGTCACACCATTGTTTGTATATTGTCTGACTACTGTTGCACTATAGTGTCAGAGTTGAGTAGTTTTGAAGGAGGCTTTATGGCCCACAAAGGTCTAATATATATTCCACCTGGTCCTTAACAGAGTTTGCCATATGTAAGTTATAGTATGATGACTAGGGCCGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCAAGGAGGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTGACCAACATGGAGAAAACCCGTCTCTACTAAAAATACAAAAATTTAGCCGGGCGTGGTGGTGCTTGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGTCAGAGGTTGCGATGAGCCGAGACGTGCCATTGCACTCCAGCCTGGGCAACGAGTGAAACACTGTCTCAAAAAAAAAAATTTTTTTTTTTAATAAAAATAGTATCATGACTAAAGAACGTGTGTGATGTATTTGCTCTTGGTTGTTTAAGGAAAATGCTAAGCAAGTA	CCAAGTTCTCACTGAAAAACATAAAAGCTGGGAAAAAAACAGAATTTGTTCAATTGGCAAACATTTGTTGATTACTGTTATAGACCAGGTGTTAGGAGTGTAGTCCCAGACCTTCTTGGCAGTTAAGAAATTGTCTTTCTCATCCAATGTCTCTCTTTCTTACCTCCTACCCCTTATGTTGCAAAGTATGGTGACTTGGAGTGAGTCCTTGGCAAATGGAGGCTGTGATAATCTATAGTAATAATCATCATTGTAATATATAATAGAAGGAGAGGGGATCTATAAATGTTTCCCAAACTTGTTAACATTCTCTTGTAGCTCCTGGTGCCATCCTGGCAGCATTTTGTAAAGTTTTGCTATTAGAAAAGAACTAAAGCCTCACTGAAATAGTTGCTTTCTTATGACTGTAGAAGTTATGACTGGGAAAGAAGACAAAAGTGCTAGATCTGCTTCTGAGGGGATAGAATAGGAGTCAGCAAAACTCAGTCACACCATTGTTTGTATATTGTCTGACTACTGTTGCACTATAGTGTCAGAGTTGAGTAGTTTTGAAGGAGGCTTTATGGCCCACAAAGGTCTAATATATATTCCACCTGGTCCTTAACAGAGTTTGCCATATGTAAGTTATAGTATGATGACTAGGGCCGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCAAGGAGGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTGACCAACATGGAGAAAACCCGTCTCTACTAAAAATACAAAAATTTAGCCGGGCGTGGTGGTGCTTGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGTCAGAGGTTGCGATGAGCCGAGACGTGCCATTGCACTCCAGCCTGGGCAACGAGTGAAACACTGTCTCAAAAAAAAAAATTTTTTTTTTTAATAAAAATAGTATCATGACTAAAGAACGTGTGTGATGTATTTGCTCTTGGTTGTTTAAGGAAAATGCTAAGCAAGTA	-			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			0	261	0	0	ENST00000324856.7:c.1921-1092_1921-70del		p.*641*	ENST00000324856	NM_006015.4																																																																																
RECQL4	9401	MSKCC	GRCh37	8	145737367	145737367	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			921	86	734	0	ENST00000428558.2:c.3320A>C	p.Tyr1107Ser	p.Y1107S	ENST00000428558	NM_004260.3	1107	tAc/tCc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737370	145737370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021390-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			908	75	715	0	ENST00000428558.2:c.3317G>T	p.Arg1106Leu	p.R1106L	ENST00000428558	NM_004260.3	1106	cGc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0021605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	96	725	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	118	626	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44879904	44879904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	171	740	3	ENST00000377967.4:c.493C>T	p.Arg165Ter	p.R165*	ENST00000377967	NM_021140.2	165	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295230	+	upstream_gene_variant	5'Flank	ONP	GGG	GGG	AGA			P-0021605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	52	646	0				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49434325	49434325	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	85	1018	2	ENST00000301067.7:c.7228C>T	p.Arg2410Ter	p.R2410*	ENST00000301067	NM_003482.3	2410	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436952	110436954	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0021605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	23	470	0	ENST00000375856.3:c.1447_1449del	p.Ser483del	p.S483del	ENST00000375856	NM_003749.2	483	AGC/-																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808916	1808916	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	54	931	0	ENST00000260795.2:c.2348C>G	p.Ser783Ter	p.S783*	ENST00000260795		783	tCa/tGa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820527	44820527	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0021605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	61	615	0	ENST00000377967.4:c.226-2A>G		p.X76_splice	ENST00000377967	NM_021140.2	76																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44896900	44896905	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TTCAAT	TTCAAT	-			P-0021605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	79	809	0	ENST00000377967.4:c.624_629del	p.Gln208_Phe209del	p.Q208_F209del	ENST00000377967	NM_021140.2	207	aTTCAATtt/att																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	120	815	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	215	564	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	215	564	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041073	29041073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	59	542	0	ENST00000282397.4:c.355G>A	p.Glu119Lys	p.E119K	ENST00000282397	NM_002019.4	119	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892299	9892299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	64	475	0	ENST00000330684.3:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000330684	NM_001134407.1	731	Gat/Aat																																																																														
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	91	666	3	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730850	40730850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	131	840	0	ENST00000373198.4:c.3685G>A	p.Asp1229Asn	p.D1229N	ENST00000373198	NM_133170.3	1229	Gac/Aac																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032045	26032045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	63	493	0	ENST00000244661.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000244661	NM_003537.3	82	Gat/Aat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572483	95572483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	70	521	0	ENST00000343455.3:c.2882C>T	p.Pro961Leu	p.P961L	ENST00000343455	NM_177438.2	961	cCt/cTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858390	9858390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	60	485	0	ENST00000330684.3:c.3011C>T	p.Ser1004Phe	p.S1004F	ENST00000330684	NM_001134407.1	1004	tCc/tTc																																																																														
CD276	80381	MSKCC	GRCh37	15	73994833	73994833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	24	249	0	ENST00000318443.5:c.317C>T	p.Ser106Phe	p.S106F	ENST00000318443	NM_001024736.1	106	tCc/tTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353866	15353866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	137	737	0	ENST00000263377.2:c.3014C>T	p.Ser1005Phe	p.S1005F	ENST00000263377	NM_058243.2	1005	tCc/tTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520257	9520257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	93	504	1	ENST00000353224.5:c.2012C>T	p.Ser671Leu	p.S671L	ENST00000353224	NM_177990.2	671	tCa/tTa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164451	36164451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	54	299	1	ENST00000300305.3:c.1424C>T	p.Ala475Val	p.A475V	ENST00000300305		475	gCc/gTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55956149	55956149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	98	652	0	ENST00000263923.4:c.3166G>A	p.Asp1056Asn	p.D1056N	ENST00000263923	NM_002253.2	1056	Gat/Aat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509849	106509849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	94	712	0	ENST00000359195.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000359195	NM_002649.2	615	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630059	187630059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	119	695	0	ENST00000441802.2:c.923C>T	p.Ser308Phe	p.S308F	ENST00000441802	NM_005245.3	308	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29684323	29684323	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	91	633	0	ENST00000358273.4:c.7906C>T	p.Gln2636Ter	p.Q2636*	ENST00000358273	NM_001042492.2	2636	Caa/Taa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260485	16260486	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	44	465	0	ENST00000375759.3:c.7756dupA	p.Thr2586AsnfsTer10	p.T2586Nfs*10	ENST00000375759	NM_015001.2	2584	gaa/gAaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713479	40713479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	98	691	0	ENST00000373198.4:c.4036G>A	p.Asp1346Asn	p.D1346N	ENST00000373198	NM_133170.3	1346	Gat/Aat																																																																														
MET	4233	MSKCC	GRCh37	7	116339799	116339799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	57	573	0	ENST00000397752.3:c.661G>A	p.Glu221Lys	p.E221K	ENST00000397752	NM_000245.2	221	Gaa/Aaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422104	81422104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	73	636	0	ENST00000298171.2:c.80C>T	p.Pro27Leu	p.P27L	ENST00000298171	NM_000369.2	27	cCa/cTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317926	8317926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	140	504	0	ENST00000356435.5:c.5687C>T	p.Ser1896Phe	p.S1896F	ENST00000356435		1896	tCc/tTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673718	176673718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	70	494	0	ENST00000439151.2:c.4418G>A	p.Arg1473Gln	p.R1473Q	ENST00000439151	NM_022455.4	1473	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	155	391	0	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524576	103524576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	31	284	0	ENST00000355739.4:c.2707C>T	p.Pro903Ser	p.P903S	ENST00000355739	NM_000123.3	903	Cca/Tca																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043464	180043464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	93	844	0	ENST00000261937.6:c.3122G>A	p.Arg1041Gln	p.R1041Q	ENST00000261937	NM_182925.4	1041	cGg/cAg																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			727	129	861	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375890	118375890	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	84	540	1	ENST00000534358.1:c.9283C>T	p.Gln3095Ter	p.Q3095*	ENST00000534358	NM_005933.3	3095	Caa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108173622	108173622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	35	571	0	ENST00000278616.4:c.5362G>A	p.Gly1788Ser	p.G1788S	ENST00000278616	NM_000051.3	1788	Ggc/Agc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371984	55371984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	104	636	0	ENST00000297316.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000297316	NM_022454.3	225	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295253	+	upstream_gene_variant	5'Flank	ONP	GAGG	GAGG	AAGA			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	50	570	0				ENST00000310581	NM_198253.2																																																																																
VTCN1	79679	MSKCC	GRCh37	1	117695875	117695875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	141	768	0	ENST00000369458.3:c.562G>A	p.Gly188Arg	p.G188R	ENST00000369458	NM_024626.3	188	Gga/Aga																																																																														
RET	5979	MSKCC	GRCh37	10	43596101	43596101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			529	84	725	1	ENST00000355710.3:c.268G>A	p.Glu90Lys	p.E90K	ENST00000355710	NM_020975.4	90	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725041	89725062	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGGTGAAGCTGTACTTCACAA	TAGGTGAAGCTGTACTTCACAA	-			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	27	289	0	ENST00000371953.3:c.1027-3_1045del		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
FGF4	2249	MSKCC	GRCh37	11	69588130	69588130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	125	713	0	ENST00000168712.1:c.568G>C	p.Gly190Arg	p.G190R	ENST00000168712	NM_002007.2	190	Ggg/Cgg																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94224082	94224082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	73	595	4	ENST00000323929.3:c.70G>T	p.Gly24Ter	p.G24*	ENST00000323929	NM_005591.3	24	Gga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18524124	18524124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	36	419	0	ENST00000266497.5:c.1636C>T	p.Pro546Ser	p.P546S	ENST00000266497		546	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432471	49432471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			587	87	730	2	ENST00000301067.7:c.8668C>T	p.Pro2890Ser	p.P2890S	ENST00000301067	NM_003482.3	2890	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434291	49434291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			821	160	1066	0	ENST00000301067.7:c.7262C>T	p.Ser2421Phe	p.S2421F	ENST00000301067	NM_003482.3	2421	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445719	49445719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			976	188	1316	1	ENST00000301067.7:c.1747C>T	p.Pro583Ser	p.P583S	ENST00000301067	NM_003482.3	583	Cct/Tct																																																																														
POLE	5426	MSKCC	GRCh37	12	133225957	133225958	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			647	106	857	1	ENST00000320574.5:c.3939_3940delinsAA	p.Gly1314Arg	p.G1314R	ENST00000320574	NM_006231.2	1313	acGGgg/acAAgg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589298	28589298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	64	476	0	ENST00000241453.7:c.2749G>A	p.Glu917Lys	p.E917K	ENST00000241453	NM_004119.2	917	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012476	29012476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140749618		P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	43	500	0	ENST00000282397.4:c.395G>A	p.Gly132Asp	p.G132D	ENST00000282397	NM_002019.4	132	gGt/gAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779500	3779500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			760	128	1141	0	ENST00000262367.5:c.5548C>T	p.Leu1850Phe	p.L1850F	ENST00000262367	NM_004380.2	1850	Ctc/Ttc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129737	30129737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	104	797	0	ENST00000263025.4:c.476C>T	p.Ser159Phe	p.S159F	ENST00000263025	NM_002746.2	159	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821080	72821081	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			663	97	695	1	ENST00000268489.5:c.11094_11095delinsAA	p.Asp3699Asn	p.D3699N	ENST00000268489	NM_006885.3	3698	acGGac/acAAac																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81902851	81902852	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	89	687	1	ENST00000359376.3:c.512_513delinsTT	p.Pro171Leu	p.P171L	ENST00000359376	NM_002661.3	171	cCC/cTT																																																																														
NF1	4763	MSKCC	GRCh37	17	29652904	29652904	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	65	440	0	ENST00000358273.4:c.4902T>A	p.Tyr1634Ter	p.Y1634*	ENST00000358273	NM_001042492.2	1634	taT/taA																																																																														
EZH1	2145	MSKCC	GRCh37	17	40864381	40864381	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			784	135	829	1	ENST00000428826.2:c.1327C>T	p.Arg443Ter	p.R443*	ENST00000428826		443	Cga/Tga																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2185873	2185873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	126	896	1	ENST00000398665.3:c.145C>T	p.Pro49Ser	p.P49S	ENST00000398665	NM_032482.2	49	Ccg/Tcg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39214723	39214723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	54	454	0	ENST00000402219.2:c.3401C>T	p.Ser1134Phe	p.S1134F	ENST00000402219	NM_005633.3	1134	tCt/tTt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39262578	39262578	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867539471		P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	57	674	0	ENST00000402219.2:c.928C>T	p.Arg310Cys	p.R310C	ENST00000402219	NM_005633.3	310	Cgt/Tgt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39285854	39285854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	53	723	0	ENST00000402219.2:c.305C>G	p.Pro102Arg	p.P102R	ENST00000402219	NM_005633.3	102	cCt/cGt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99162485	99162485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	81	477	0	ENST00000074304.5:c.1003C>T	p.Pro335Ser	p.P335S	ENST00000074304	NM_001134224.1	335	Ccc/Tcc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212289013	212289013	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	52	601	0	ENST00000342788.4:c.2733G>A	p.Trp911Ter	p.W911*	ENST00000342788	NM_005235.2	911	tgG/tgA																																																																														
SRC	6714	MSKCC	GRCh37	20	36014544	36014544	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	97	753	0	ENST00000358208.4:c.317A>C	p.Lys106Thr	p.K106T	ENST00000358208		106	aAg/aCg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727143	40727143	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	113	673	0	ENST00000373198.4:c.3821A>G	p.Asn1274Ser	p.N1274S	ENST00000373198	NM_133170.3	1274	aAc/aGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306605	41306605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			648	96	857	0	ENST00000373198.4:c.1054C>T	p.Pro352Ser	p.P352S	ENST00000373198	NM_133170.3	352	Ccc/Tcc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866385	42866386	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			658	85	755	3	ENST00000398585.3:c.246_247delinsTT	p.Pro83Ser	p.P83S	ENST00000398585	NM_001135099.1	82	taCCcg/taTTcg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421272	12421272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			770	123	828	1	ENST00000287820.6:c.152C>T	p.Ser51Phe	p.S51F	ENST00000287820	NM_015869.4	51	tCc/tTc																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799950	72799950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	59	453	0	ENST00000325599.8:c.1219G>A	p.Glu407Lys	p.E407K	ENST00000325599	NM_018130.2	407	Gaa/Aaa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204578	128204578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			575	125	702	0	ENST00000341105.2:c.863C>T	p.Ser288Phe	p.S288F	ENST00000341105	NM_032638.4	288	tCc/tTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670600	134670600	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			735	142	879	1	ENST00000398015.3:c.511A>T	p.Asn171Tyr	p.N171Y	ENST00000398015	NM_004441.4	171	Aat/Tat																																																																														
ATR	545	MSKCC	GRCh37	3	142272191	142272191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	80	529	0	ENST00000350721.4:c.2683T>C	p.Cys895Arg	p.C895R	ENST00000350721	NM_001184.3	895	Tgt/Cgt																																																																														
ATR	545	MSKCC	GRCh37	3	142281508	142281508	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	54	789	0	ENST00000350721.4:c.736del	p.Ser246ProfsTer2	p.S246Pfs*2	ENST00000350721	NM_001184.3	246	Tcc/cc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502443	186502444	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	45	541	1	ENST00000323963.5:c.166_167delinsTT	p.Pro56Phe	p.P56F	ENST00000323963		56	CCt/TTt																																																																														
BCL6	604	MSKCC	GRCh37	3	187446271	187446271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	121	662	1	ENST00000232014.4:c.1417C>T	p.Pro473Ser	p.P473S	ENST00000232014	NM_001130845.1	473	Ccg/Tcg																																																																														
KDR	3791	MSKCC	GRCh37	4	55961761	55961761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	87	625	0	ENST00000263923.4:c.2800G>A	p.Glu934Lys	p.E934K	ENST00000263923	NM_002253.2	934	Gaa/Aaa																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99823118	99823118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	44	429	0	ENST00000280892.6:c.94C>T	p.Pro32Ser	p.P32S	ENST00000280892	NM_001130678.1	32	Cct/Tct																																																																														
TET2	54790	MSKCC	GRCh37	4	106155721	106155721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	57	449	0	ENST00000380013.4:c.622C>T	p.Pro208Ser	p.P208S	ENST00000380013	NM_001127208.2	208	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1294364	1294364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			518	97	730	0	ENST00000310581.5:c.637C>T	p.Pro213Ser	p.P213S	ENST00000310581	NM_198253.2	213	Ccc/Tcc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80021355	80021355	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	81	705	0	ENST00000265081.6:c.1424T>C	p.Phe475Ser	p.F475S	ENST00000265081	NM_002439.4	475	tTt/tCt																																																																														
APC	324	MSKCC	GRCh37	5	112178340	112178341	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	43	590	1	ENST00000257430.4:c.7049_7050delinsTT	p.Ser2350Phe	p.S2350F	ENST00000257430	NM_000038.5	2350	tCC/tTT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674156	117674156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	87	639	0	ENST00000368508.3:c.4318C>T	p.Pro1440Ser	p.P1440S	ENST00000368508	NM_002944.2	1440	Cca/Tca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704499	117704499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	63	494	0	ENST00000368508.3:c.2477C>T	p.Pro826Leu	p.P826L	ENST00000368508	NM_002944.2	826	cCt/cTt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201844	152201844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	72	495	0	ENST00000206249.3:c.698G>A	p.Arg233Lys	p.R233K	ENST00000206249	NM_000125.3	233	aGg/aAg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152382134	152382134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	56	410	0	ENST00000206249.3:c.1244G>A	p.Gly415Glu	p.G415E	ENST00000206249	NM_000125.3	415	gGa/gAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968206	68968206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	98	798	0	ENST00000288368.4:c.1235G>A	p.Gly412Glu	p.G412E	ENST00000288368	NM_024870.2	412	gGa/gAa																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5534822	5534822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	174	583	0	ENST00000397747.3:c.133G>A	p.Asp45Asn	p.D45N	ENST00000397747	NM_025239.3	45	Gac/Aac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518411	8518411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	88	253	0	ENST00000356435.5:c.980G>A	p.Gly327Glu	p.G327E	ENST00000356435		327	gGa/gAa																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966641	36966641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	80	675	0	ENST00000358127.4:c.685T>C	p.Phe229Leu	p.F229L	ENST00000358127	NM_001280556.1	229	Ttc/Ctc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342592	87342592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	87	575	0	ENST00000277120.3:c.877G>A	p.Glu293Lys	p.E293K	ENST00000277120		293	Gaa/Aaa																																																																														
SYK	6850	MSKCC	GRCh37	9	93636995	93636995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	74	470	0	ENST00000375746.1:c.1045G>A	p.Glu349Lys	p.E349K	ENST00000375746	NM_001174167.1	349	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409009	139409009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			744	124	983	0	ENST00000277541.6:c.2160C>A	p.Cys720Ter	p.C720*	ENST00000277541	NM_017617.3	720	tgC/tgA																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317541	1317541	+	downstream_gene_variant	3'Flank	SNP	A	A	C			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	99	714	0				ENST00000381566																																																																																	
PAK1	5058	MSKCC	GRCh37	11	77051713	77051713	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	83	629	0	ENST00000356341.3:c.1094A>G	p.Gln365Arg	p.Q365R	ENST00000356341	NM_002576.4	365	cAa/cGa																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856271	111856271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			68	12	66	0	ENST00000341259.2:c.322C>T	p.Pro108Ser	p.P108S	ENST00000341259	NM_005475.2	108	Ccc/Tcc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42843804	42843804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			575	86	676	0	ENST00000398585.3:c.1115C>T	p.Pro372Leu	p.P372L	ENST00000398585	NM_001135099.1	372	cCa/cTa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49939980	49939980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			720	119	851	1	ENST00000296474.3:c.1063G>A	p.Asp355Asn	p.D355N	ENST00000296474	NM_002447.2	355	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172069	32172069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			839	147	827	0	ENST00000375023.3:c.2963G>A	p.Gly988Glu	p.G988E	ENST00000375023	NM_004557.3	988	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066707	94066711	+	stop_gained	Nonsense_Mutation	ONP	CATTC	CATTC	TATTT			P-0021708-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	82	624	1	ENST00000369303.4:c.1048_1052delinsAAATA	p.Glu350_Trp351delinsLysTer	p.E350_W351delinsK*	ENST00000369303	NM_004440.3	350	GAATGg/AAATAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	226	761	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295168	1295168	+	upstream_gene_variant	5'Flank	SNP	C	C	G			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	100	290	0				ENST00000310581	NM_198253.2																																																																																
RBM10	8241	MSKCC	GRCh37	X	47039815	47039815	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	155	415	0	ENST00000329236.7:c.927-3C>G		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																															
NUF2	83540	MSKCC	GRCh37	1	163318820	163318821	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	76	641	4	ENST00000271452.3:c.1210_1211delinsTT	p.Gly404Leu	p.G404L	ENST00000271452	NM_145697.2	404	GGa/TTa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945435	71945435	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	114	740	4	ENST00000298229.2:c.2323G>T	p.Glu775Ter	p.E775*	ENST00000298229	NM_001567.3	775	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295166	1295166	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	101	296	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	202	458	0	ENST00000304494.5:c.151G>T	p.Val51Phe	p.V51F	ENST00000304494	NM_000077.4	51	Gtc/Ttc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	202	458	0	ENST00000304494.5:c.151G>T	p.Val51Phe	p.V51F	ENST00000304494	NM_000077.4	51	Gtc/Ttc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971207	21971207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	202	458	0	ENST00000304494.5:c.151G>T	p.Val51Phe	p.V51F	ENST00000304494	NM_000077.4	51	Gtc/Ttc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040669	47040670	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0021736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	272	468	0	ENST00000329236.7:c.1071_1072del	p.Tyr357Ter	p.Y357*	ENST00000329236	NM_001204466.1	357	tAC/t																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0021849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	97	386	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	94	826	1	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																														
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0021849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	191	832	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	95	960	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	162	1095	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
CIC	23152	MSKCC	GRCh37	19	42788861	42788861	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	110	723	0	ENST00000575354.2:c.5A>G	p.Tyr2Cys	p.Y2C	ENST00000575354	NM_015125.3	2	tAt/tGt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280007	66280007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	18	332	0	ENST00000273854.3:c.1682C>A	p.Pro561Gln	p.P561Q	ENST00000273854	NM_004439.5	561	cCa/cAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	114	611	1	ENST00000304494.5:c.334C>T	p.Arg112Cys	p.R112C	ENST00000304494	NM_000077.4	112	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	114	611	1	ENST00000304494.5:c.334C>T	p.Arg112Cys	p.R112C	ENST00000304494	NM_000077.4	112	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	114	611	1	ENST00000304494.5:c.334C>T	p.Arg112Cys	p.R112C	ENST00000304494	NM_000077.4	112	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971023	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	115	624	0	ENST00000304494.5:c.335del	p.Arg112LeufsTer34	p.R112Lfs*34	ENST00000304494	NM_000077.4	112	cGt/ct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971023	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	115	624	0	ENST00000304494.5:c.335del	p.Arg112LeufsTer34	p.R112Lfs*34	ENST00000304494	NM_000077.4	112	cGt/ct																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339147	65339147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	41	723	0	ENST00000342505.4:c.389C>G	p.Ser130Cys	p.S130C	ENST00000342505	NM_002227.2	130	tCt/tGt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46233243	46233243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	24	666	1	ENST00000334344.6:c.1462C>T	p.Gln488Ter	p.Q488*	ENST00000334344	NM_152641.2	488	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434606	49434610	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	AGGTG	AGGTG	TCA			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	116	1212	2	ENST00000301067.7:c.6943_6947delinsTGA	p.His2315Ter	p.H2315*	ENST00000301067	NM_003482.3	2315	CACCTg/TGAg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265428	152265428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	142	739	1	ENST00000206249.3:c.881G>T	p.Ser294Ile	p.S294I	ENST00000206249	NM_000125.3	294	aGc/aTc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139820231	139820231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	69	1008	1	ENST00000247668.2:c.1384G>T	p.Asp462Tyr	p.D462Y	ENST00000247668	NM_021138.3	462	Gac/Tac																																																																														
ATRX	546	MSKCC	GRCh37	X	76937390	76937390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	93	454	2	ENST00000373344.5:c.3358G>T	p.Asp1120Tyr	p.D1120Y	ENST00000373344	NM_000489.3	1120	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	52	582	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	89	442	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	71	494	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	71	494	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	71	494	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36208923	36208925	+	start_lost,inframe_deletion	Translation_Start_Site	DEL	GGC	GGC	-			P-0022528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	10	53	0	ENST00000222270.7:c.14_16del	p.Ala5del	p.A5del	ENST00000222270	NM_014727.1	1	atGGCg/atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	203	595	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0022605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	219	646	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0022605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	253	584	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	296	596	1	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	296	596	1	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	296	596	1	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652225	36652226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	276	720	0	ENST00000244741.5:c.349dup	p.Cys117LeufsTer12	p.C117Lfs*12	ENST00000244741	NM_000389.4	116	tct/tcTt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65313274	65313274	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	289	661	0	ENST00000342505.4:c.1840G>C	p.Glu614Gln	p.E614Q	ENST00000342505	NM_002227.2	614	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426235	49426235	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	363	771	2	ENST00000301067.7:c.12253C>T	p.Gln4085Ter	p.Q4085*	ENST00000301067	NM_003482.3	4085	Cag/Tag																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40681810	40681810	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0022605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	102	239	0	ENST00000249776.8:c.589C>G	p.Gln197Glu	p.Q197E	ENST00000249776	NM_033286.3	197	Cag/Gag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832898	3832898	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	197	427	1	ENST00000262367.5:c.1360C>T	p.Gln454Ter	p.Q454*	ENST00000262367	NM_004380.2	454	Caa/Taa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368369	225368370	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0022605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	209	436	0	ENST00000264414.4:c.1376dup	p.Thr460AspfsTer2	p.T460Dfs*2	ENST00000264414	NM_003590.4	459	aag/aaAg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922932	44922947	+	frameshift_variant	Frame_Shift_Del	DEL	TAACAGGAAGTGGAAG	TAACAGGAAGTGGAAG	-			P-0022605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	241	259	0	ENST00000377967.4:c.1796_1811del	p.Thr599MetfsTer21	p.T599Mfs*21	ENST00000377967	NM_021140.2	598	aTAACAGGAAGTGGAAGt/at																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	43	798	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	43	798	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	100	1095	0	ENST00000269305.4:c.434T>G	p.Leu145Arg	p.L145R	ENST00000269305	NM_001126112.2	145	cTg/cGg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46727002	46727002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	64	839	1	ENST00000371975.4:c.836G>T	p.Arg279Leu	p.R279L	ENST00000371975	NM_003579.3	279	cGc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	43	798	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862887	9862887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	42	906	2	ENST00000330684.3:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000330684	NM_001134407.1	806	Gag/Aag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635130	87635130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	47	574	0	ENST00000277120.3:c.2182C>A	p.His728Asn	p.H728N	ENST00000277120		728	Cac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100949	27100949	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	44	853	0	ENST00000324856.7:c.4231C>T	p.Gln1411Ter	p.Q1411*	ENST00000324856	NM_006015.4	1411	Cag/Tag																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273016	115273016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	58	952	0	ENST00000438362.2:c.1357G>T	p.Ala453Ser	p.A453S	ENST00000438362	NM_001242891.1	453	Gct/Tct																																																																														
CCND1	595	MSKCC	GRCh37	11	69465976	69465976	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	108	934	2	ENST00000227507.2:c.814G>T	p.Glu272Ter	p.E272*	ENST00000227507	NM_053056.2	272	Gag/Tag																																																																														
PGR	5241	MSKCC	GRCh37	11	100912760	100912760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	98	903	1	ENST00000325455.5:c.2562G>T	p.Lys854Asn	p.K854N	ENST00000325455	NM_001202474.3	854	aaG/aaT																																																																														
KDM5A	5927	MSKCC	GRCh37	12	442712	442712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	47	851	0	ENST00000399788.2:c.1594C>A	p.Leu532Ile	p.L532I	ENST00000399788	NM_001042603.1	532	Ctt/Att																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691155	18691155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	46	777	0	ENST00000266497.5:c.3266C>G	p.Pro1089Arg	p.P1089R	ENST00000266497		1089	cCa/cGa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112251	115112251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	14	369	0	ENST00000257566.3:c.1489C>A	p.Pro497Thr	p.P497T	ENST00000257566	NM_016569.3	497	Ccc/Acc																																																																														
RB1	5925	MSKCC	GRCh37	13	49054175	49054175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	47	654	2	ENST00000267163.4:c.2755A>G	p.Ser919Gly	p.S919G	ENST00000267163	NM_000321.2	919	Agc/Ggc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554344	81554344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	55	860	0	ENST00000298171.2:c.364C>T	p.Leu122Phe	p.L122F	ENST00000298171	NM_000369.2	122	Ctc/Ttc																																																																														
CD79B	974	MSKCC	GRCh37	17	62007554	62007554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	55	1189	1	ENST00000392795.3:c.313C>A	p.Leu105Ile	p.L105I	ENST00000392795	NM_001039933.1	105	Ctc/Atc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39584427	39584427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	29	631	1	ENST00000262039.4:c.1092G>T	p.Leu364Phe	p.L364F	ENST00000262039	NM_002647.2	364	ttG/ttT																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211199	2211199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	50	998	1	ENST00000398665.3:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000398665	NM_032482.2	485	Cag/Tag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375445	15375445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	40	904	0	ENST00000263377.2:c.982G>T	p.Val328Leu	p.V328L	ENST00000263377	NM_058243.2	328	Gtg/Ttg																																																																														
ALK	238	MSKCC	GRCh37	2	30143106	30143106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	84	1014	0	ENST00000389048.3:c.420G>T	p.Gln140His	p.Q140H	ENST00000389048	NM_004304.4	140	caG/caT																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128050344	128050344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	83	780	1	ENST00000285398.2:c.313G>T	p.Glu105Ter	p.E105*	ENST00000285398	NM_000122.1	105	Gag/Tag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274496	198274496	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	30	741	0	ENST00000335508.6:c.902G>C	p.Arg301Thr	p.R301T	ENST00000335508	NM_012433.2	301	aGa/aCa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248674	212248674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	49	699	0	ENST00000342788.4:c.3593C>G	p.Ala1198Gly	p.A1198G	ENST00000342788	NM_005235.2	1198	gCc/gGc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162153	47162153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	34	735	0	ENST00000409792.3:c.3973G>T	p.Gly1325Ter	p.G1325*	ENST00000409792	NM_014159.6	1325	Gga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55964347	55964347	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	61	859	1	ENST00000263923.4:c.2466T>A	p.Tyr822Ter	p.Y822*	ENST00000263923	NM_002253.2	822	taT/taA																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143029255	143029255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	35	629	0	ENST00000262992.4:c.2365C>A	p.Pro789Thr	p.P789T	ENST00000262992	NM_001101669.1	789	Cct/Act																																																																														
TERT	7015	MSKCC	GRCh37	5	1295338	1295338	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	35	705	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112177665	112177665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	29	583	0	ENST00000257430.4:c.6374C>G	p.Ser2125Cys	p.S2125C	ENST00000257430	NM_000038.5	2125	tCt/tGt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188318	32188318	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	101	1055	1	ENST00000375023.3:c.1023C>A	p.Cys341Ter	p.C341*	ENST00000375023	NM_004557.3	341	tgC/tgA																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527739	157527739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	40	719	0	ENST00000346085.5:c.5464G>T	p.Gly1822Cys	p.G1822C	ENST00000346085	NM_020732.3	1822	Ggc/Tgc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962767	2962767	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	42	777	0	ENST00000396946.4:c.2141T>A	p.Leu714Gln	p.L714Q	ENST00000396946	NM_032415.4	714	cTg/cAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524971	8524971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	29	687	0	ENST00000356435.5:c.633C>A	p.Asn211Lys	p.N211K	ENST00000356435		211	aaC/aaA																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209467	98209467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	39	902	0	ENST00000331920.6:c.4071G>T	p.Met1357Ile	p.M1357I	ENST00000331920	NM_000264.3	1357	atG/atT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409902	63409902	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	47	351	0	ENST00000330258.3:c.3265A>T	p.Arg1089Trp	p.R1089W	ENST00000330258	NM_152424.3	1089	Agg/Tgg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412027	63412027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	33	548	0	ENST00000330258.3:c.1140G>T	p.Glu380Asp	p.E380D	ENST00000330258	NM_152424.3	380	gaG/gaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	56	531	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	49039374	49039374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	71	1062	0	ENST00000267163.4:c.2359C>T	p.Arg787Ter	p.R787*	ENST00000267163	NM_000321.2	787	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	24	735	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
ERG	2078	MSKCC	GRCh37	21	39817412	39817412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200306085		P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	49	754	0	ENST00000288319.7:c.151G>A	p.Val51Ile	p.V51I	ENST00000288319	NM_182918.3	51	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	23	993	1	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																																																														
HGF	3082	MSKCC	GRCh37	7	81381502	81381502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	28	636	1	ENST00000222390.5:c.559C>T	p.Pro187Ser	p.P187S	ENST00000222390	NM_000601.4	187	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	26	1032	0	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	19	948	3	ENST00000269305.4:c.743_744delGGinsAA	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGG/cAA																																																																														
STK19	8859	MSKCC	GRCh37	6	31940120	31940120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	42	978	0	ENST00000375331.2:c.262G>A	p.Glu88Lys	p.E88K	ENST00000375331	NM_004197.1	88	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087516	27087516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	56	970	2	ENST00000324856.7:c.2090C>T	p.Pro697Leu	p.P697L	ENST00000324856	NM_006015.4	697	cCg/cTg																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363517	40363517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	56	815	3	ENST00000397332.2:c.712C>T	p.His238Tyr	p.H238Y	ENST00000397332	NM_001033082.2	238	Cat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577540	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	29	944	4	ENST00000269305.4:c.741_742delinsTT	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	247	aaCCgg/aaTTgg																																																																														
MET	4233	MSKCC	GRCh37	7	116412817	116412817	+	intron_variant	Intron	SNP	C	C	T			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1194	51	1343	1	ENST00000397752.3:c.3028+774C>T		p.*1010*	ENST00000397752	NM_000245.2																																																																																
JAK1	3716	MSKCC	GRCh37	1	65332634	65332634	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	44	728	1	ENST00000342505.4:c.905T>G	p.Phe302Cys	p.F302C	ENST00000342505	NM_002227.2	302	tTt/tGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444042	49444042	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	40	797	1	ENST00000301067.7:c.3329del	p.Pro1110GlnfsTer9	p.P1110Qfs*9	ENST00000301067	NM_003482.3	1110	cCa/ca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32936756	32936757	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	54	849	0	ENST00000380152.3:c.7902_7903delinsAA	p.Met2634_Glu2635delinsIleLys	p.M2634_E2635delinsIK	ENST00000380152		2634	atGGaa/atAAaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578476	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	42	1056	5	ENST00000269305.4:c.454_455delinsTT	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	CCg/TTg																																																																														
ERF	2077	MSKCC	GRCh37	19	42752792	42752792	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	53	1011	0	ENST00000222329.4:c.1472A>G	p.Asp491Gly	p.D491G	ENST00000222329	NM_006494.2	491	gAc/gGc																																																																														
CIC	23152	MSKCC	GRCh37	19	42788891	42788891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	32	772	1	ENST00000575354.2:c.35C>T	p.Ser12Phe	p.S12F	ENST00000575354	NM_015125.3	12	tCc/tTc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29099550	29099550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	35	637	0	ENST00000328354.6:c.851G>A	p.Cys284Tyr	p.C284Y	ENST00000328354	NM_007194.3	284	tGc/tAc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934291	49934291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	30	786	1	ENST00000296474.3:c.2216C>T	p.Pro739Leu	p.P739L	ENST00000296474	NM_002447.2	739	cCc/cTc																																																																														
SDHA	6389	MSKCC	GRCh37	5	228330	228330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	20	411	0	ENST00000264932.6:c.652G>A	p.Glu218Lys	p.E218K	ENST00000264932	NM_004168.2	218	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1293678	1293678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	105	1002	0	ENST00000310581.5:c.1323G>T	p.Glu441Asp	p.E441D	ENST00000310581	NM_198253.2	441	gaG/gaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			551	149	659	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			495	113	560	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			419	109	503	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			425	111	635	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			425	111	635	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			425	111	635	0	ENST00000304494.5:c.172del	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	58	Cga/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			720	34	955	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																																																														
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			795	318	845	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																														
ATM	472	MSKCC	GRCh37	11	108196791	108196791	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			486	90	437	1	ENST00000278616.4:c.6814G>T	p.Glu2272Ter	p.E2272*	ENST00000278616	NM_000051.3	2272	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	438102	438102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			620	151	627	0	ENST00000399788.2:c.1867G>A	p.Asp623Asn	p.D623N	ENST00000399788	NM_001042603.1	623	Gat/Aat																																																																														
NUP93	9688	MSKCC	GRCh37	16	56839461	56839461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			715	172	736	1	ENST00000308159.5:c.406G>A	p.Glu136Lys	p.E136K	ENST00000308159	NM_014669.4	136	Gag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116397530	116397530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			832	169	750	0	ENST00000397752.3:c.1902C>A	p.Phe634Leu	p.F634L	ENST00000397752	NM_000245.2	634	ttC/ttA																																																																														
MET	4233	MSKCC	GRCh37	7	116398518	116398518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			722	157	629	0	ENST00000397752.3:c.2108C>T	p.Ser703Leu	p.S703L	ENST00000397752	NM_000245.2	703	tCa/tTa																																																																														
AR	367	MSKCC	GRCh37	X	66765910	66765910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022891-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			832	180	1024	0	ENST00000374690.3:c.922G>C	p.Glu308Gln	p.E308Q	ENST00000374690	NM_000044.3	308	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	377	701	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	251	535	0				ENST00000310581	NM_198253.2																																																																																
NUP93	9688	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	133	506	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049694	16049694	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	284	752	0	ENST00000268712.3:c.1078C>T	p.Gln360Ter	p.Q360*	ENST00000268712	NM_006311.3	360	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295195	1295195	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	234	403	0				ENST00000310581	NM_198253.2																																																																																
KNSTRN	90417	MSKCC	GRCh37	15	40675145	40675145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	203	789	0	ENST00000249776.8:c.109G>C	p.Glu37Gln	p.E37Q	ENST00000249776	NM_033286.3	37	Gaa/Caa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784380	9784380	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	204	871	0	ENST00000377346.4:c.2765A>T	p.Lys922Met	p.K922M	ENST00000377346	NM_005026.3	922	aAg/aTg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240125	41240125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	20	180	0	ENST00000379561.5:c.225C>G	p.Ser75Arg	p.S75R	ENST00000379561	NM_002015.3	75	agC/agG																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675213	40675213	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	174	721	0	ENST00000249776.8:c.177G>C	p.Glu59Asp	p.E59D	ENST00000249776	NM_033286.3	59	gaG/gaC																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675461	40675461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	188	813	0	ENST00000249776.8:c.242G>C	p.Ser81Thr	p.S81T	ENST00000249776	NM_033286.3	81	aGt/aCt																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675508	40675508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	142	631	0	ENST00000249776.8:c.289G>A	p.Gly97Ser	p.G97S	ENST00000249776	NM_033286.3	97	Ggc/Agc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639867	3639867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	200	742	1	ENST00000294008.3:c.3772C>T	p.Pro1258Ser	p.P1258S	ENST00000294008	NM_032444.2	1258	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579415	7579416	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	340	820	1	ENST00000269305.4:c.270_271dup	p.Trp91SerfsTer33	p.W91Sfs*33	ENST00000269305	NM_001126112.2	91	tgg/tCTgg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40469236	40469236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	107	434	0	ENST00000264657.5:c.2108C>A	p.Ala703Asp	p.A703D	ENST00000264657	NM_139276.2	703	gCc/gAc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615713	1615713	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	232	959	0	ENST00000344749.5:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000344749	NM_001136139.2	520	Gag/Tag																																																																														
INSR	3643	MSKCC	GRCh37	19	7150535	7150535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	328	754	0	ENST00000302850.5:c.2240C>G	p.Ser747Cys	p.S747C	ENST00000302850	NM_000208.2	747	tCt/tGt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610289	10610302	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCGAATTCAATG	AGGCGAATTCAATG	-			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	199	944	0	ENST00000171111.5:c.408_421del	p.Ile137HisfsTer32	p.I137Hfs*32	ENST00000171111	NM_203500.1	136	ctCATTGAATTCGCCTac/ctac																																																																														
AXL	558	MSKCC	GRCh37	19	41727811	41727811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	1292	899	1	ENST00000301178.4:c.436G>A	p.Glu146Lys	p.E146K	ENST00000301178	NM_021913.4	146	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	29543665	29543665	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	319	836	0	ENST00000389048.3:c.1498C>T	p.Gln500Ter	p.Q500*	ENST00000389048	NM_004304.4	500	Caa/Taa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670250	134670250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	55	547	0	ENST00000398015.3:c.161C>A	p.Thr54Asn	p.T54N	ENST00000398015	NM_004441.4	54	aCc/aAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127432	55127432	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	197	735	0	ENST00000257290.5:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000257290	NM_006206.4	74	Gaa/Caa																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271219	26271219	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	382	568	0	ENST00000305910.3:c.394C>G	p.Arg132Gly	p.R132G	ENST00000305910	NM_003534.2	132	Cgt/Ggt																																																																														
HGF	3082	MSKCC	GRCh37	7	81381528	81381528	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	93	468	0	ENST00000222390.5:c.533G>C	p.Arg178Pro	p.R178P	ENST00000222390	NM_000601.4	178	cGa/cCa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922884	44922884	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	280	693	0	ENST00000377967.4:c.1745C>G	p.Ser582Ter	p.S582*	ENST00000377967	NM_021140.2	582	tCa/tGa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949083	44949083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	143	677	0	ENST00000377967.4:c.3644G>C	p.Gly1215Ala	p.G1215A	ENST00000377967	NM_021140.2	1215	gGa/gCa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939255	76939255	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	405	981	0	ENST00000373344.5:c.1493G>C	p.Arg498Thr	p.R498T	ENST00000373344	NM_000489.3	498	aGa/aCa																																																																														
ATRX	546	MSKCC	GRCh37	X	76940499	76940499	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	212	560	0	ENST00000373344.5:c.595-1G>A		p.X199_splice	ENST00000373344	NM_000489.3	199																																																																															
XIAP	331	MSKCC	GRCh37	X	123019670	123019670	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	129	717	0	ENST00000355640.3:c.158T>G	p.Leu53Arg	p.L53R	ENST00000355640		53	cTt/cGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	363	640	0				ENST00000310581	NM_198253.2																																																																																
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	136	765	1	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
ALK	238	MSKCC	GRCh37	2	29498004	29498004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	244	746	2	ENST00000389048.3:c.2002G>A	p.Glu668Lys	p.E668K	ENST00000389048	NM_004304.4	668	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29560175	29560175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	145	463	1	ENST00000358273.4:c.3652C>T	p.Gln1218Ter	p.Q1218*	ENST00000358273	NM_001042492.2	1218	Caa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514563	41514563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	165	636	0	ENST00000373198.4:c.98C>T	p.Ser33Phe	p.S33F	ENST00000373198	NM_133170.3	33	tCc/tTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481412	140481412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	109	658	3	ENST00000288602.6:c.1396G>A	p.Gly466Arg	p.G466R	ENST00000288602	NM_004333.4	466	Gga/Aga																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264965	46264965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	225	598	0	ENST00000371998.3:c.1835C>T	p.Pro612Leu	p.P612L	ENST00000371998		612	cCt/cTt																																																																														
BLM	641	MSKCC	GRCh37	15	91312725	91312725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	291	633	0	ENST00000355112.3:c.2464C>T	p.Pro822Ser	p.P822S	ENST00000355112	NM_000057.2	822	Cct/Tct																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	212	610	3	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31025023	31025023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	227	578	1	ENST00000375687.4:c.4508C>T	p.Ser1503Leu	p.S1503L	ENST00000375687	NM_015338.5	1503	tCg/tTg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134123	41134123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	208	531	3	ENST00000379561.5:c.1505C>T	p.Ser502Leu	p.S502L	ENST00000379561	NM_002015.3	502	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	355	1205	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																														
MGA	23269	MSKCC	GRCh37	15	42041074	42041074	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	150	952	1	ENST00000219905.7:c.5452C>T	p.Arg1818Ter	p.R1818*	ENST00000219905	NM_001164273.1	1818	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435469	18435469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	130	332	1	ENST00000266497.5:c.454G>A	p.Asp152Asn	p.D152N	ENST00000266497		152	Gat/Aat																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971370	13971370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	161	411	0	ENST00000405192.2:c.559C>T	p.Arg187Cys	p.R187C	ENST00000405192	NM_001163147.1	187	Cgc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212587251	212587251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	183	510	1	ENST00000342788.4:c.750G>A	p.Met250Ile	p.M250I	ENST00000342788	NM_005235.2	250	atG/atA																																																																														
PGR	5241	MSKCC	GRCh37	11	100933480	100933480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	53	277	0	ENST00000325455.5:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000325455	NM_001202474.3	637	cGa/cAa																																																																														
ERG	2078	MSKCC	GRCh37	21	39764328	39764328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	44	822	0	ENST00000288319.7:c.784G>A	p.Gly262Ser	p.G262S	ENST00000288319	NM_182918.3	262	Ggt/Agt																																																																														
SDHA	6389	MSKCC	GRCh37	5	226103	226103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	135	754	1	ENST00000264932.6:c.562C>T	p.Arg188Trp	p.R188W	ENST00000264932	NM_004168.2	188	Cgg/Tgg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115392	115115392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	228	963	0	ENST00000257566.3:c.934G>A	p.Glu312Lys	p.E312K	ENST00000257566	NM_016569.3	312	Gaa/Aaa																																																																														
STK19	8859	MSKCC	GRCh37	6	31940120	31940120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	343	1103	0	ENST00000375331.2:c.262G>A	p.Glu88Lys	p.E88K	ENST00000375331	NM_004197.1	88	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979524	2979524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	258	818	0	ENST00000396946.4:c.723G>T	p.Glu241Asp	p.E241D	ENST00000396946	NM_032415.4	241	gaG/gaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295215	1295215	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	364	640	1				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295204	1295204	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs2735943		P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	341	586	2				ENST00000310581	NM_198253.2																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212484001	212484001	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	113	521	0	ENST00000342788.4:c.2203-1G>A		p.X735_splice	ENST00000342788	NM_005235.2	735																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251578	212251578	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	100	583	0	ENST00000342788.4:c.3481G>A	p.Glu1161Lys	p.E1161K	ENST00000342788	NM_005235.2	1161	Gaa/Aaa																																																																														
CASP8	841	MSKCC	GRCh37	2	202131411	202131411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	117	663	0	ENST00000358485.4:c.379C>T	p.Arg127Ter	p.R127*	ENST00000358485	NM_001080125.1	127	Cga/Tga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351388	89351388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	155	886	1	ENST00000301030.4:c.1562C>T	p.Ser521Phe	p.S521F	ENST00000301030	NM_001256183.1	521	tCc/tTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637685	176637685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	202	737	0	ENST00000439151.2:c.2285C>T	p.Ser762Phe	p.S762F	ENST00000439151	NM_022455.4	762	tCc/tTc																																																																														
SYK	6850	MSKCC	GRCh37	9	93606553	93606553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	410	841	2	ENST00000375746.1:c.373G>A	p.Glu125Lys	p.E125K	ENST00000375746	NM_001174167.1	125	Gaa/Aaa																																																																														
CBL	867	MSKCC	GRCh37	11	119156149	119156149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	164	802	1	ENST00000264033.4:c.1814C>T	p.Ser605Phe	p.S605F	ENST00000264033	NM_005188.3	605	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644451	18644451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	123	754	0	ENST00000266497.5:c.2629C>T	p.Pro877Ser	p.P877S	ENST00000266497		877	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7579421	7579421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	157	912	3	ENST00000269305.4:c.266C>T	p.Pro89Leu	p.P89L	ENST00000269305	NM_001126112.2	89	cCc/cTc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780216	9780217	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	129	946	3	ENST00000377346.4:c.1386_1387delinsAT	p.Asn462_Pro463delinsLysSer	p.N462_P463delinsKS	ENST00000377346	NM_005026.3	462	aaCCcc/aaATcc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11193191	11193192	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	261	865	1	ENST00000361445.4:c.5309_5310delinsTT	p.Pro1770Leu	p.P1770L	ENST00000361445	NM_004958.3	1770	cCC/cTT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106081	27106081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	122	626	1	ENST00000324856.7:c.5692C>T	p.Pro1898Ser	p.P1898S	ENST00000324856	NM_006015.4	1898	Cca/Tca																																																																														
SESN2	83667	MSKCC	GRCh37	1	28600014	28600014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	235	862	0	ENST00000253063.3:c.896C>T	p.Pro299Leu	p.P299L	ENST00000253063	NM_031459.4	299	cCc/cTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458317	120458317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	239	741	1	ENST00000256646.2:c.7028C>T	p.Pro2343Leu	p.P2343L	ENST00000256646	NM_024408.3	2343	cCa/cTa																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176176057	176176058	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	256	833	0	ENST00000367669.3:c.57_58delinsAA	p.Ala20Thr	p.A20T	ENST00000367669	NM_022457.5	19	tcGGcg/tcAAcg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193094324	193094324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	156	677	0	ENST00000367435.3:c.214C>T	p.Pro72Ser	p.P72S	ENST00000367435	NM_024529.4	72	Cct/Tct																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245912926	245912926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	248	639	0	ENST00000388985.4:c.1226G>A	p.Ser409Asn	p.S409N	ENST00000388985		409	aGc/aAc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625228	69625228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	215	971	2	ENST00000334134.2:c.565G>A	p.Glu189Lys	p.E189K	ENST00000334134	NM_005247.2	189	Gag/Aag																																																																														
PGR	5241	MSKCC	GRCh37	11	100999588	100999588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	161	1241	3	ENST00000325455.5:c.214G>A	p.Glu72Lys	p.E72K	ENST00000325455	NM_001202474.3	72	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373727	118373727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	83	546	0	ENST00000534358.1:c.7120C>T	p.His2374Tyr	p.H2374Y	ENST00000534358	NM_005933.3	2374	Cat/Tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415607	49415607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	238	620	0	ENST00000301067.7:c.16570C>T	p.Pro5524Ser	p.P5524S	ENST00000301067	NM_003482.3	5524	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443886	49443887	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	271	995	1	ENST00000301067.7:c.3484_3485delinsTT	p.Pro1162Phe	p.P1162F	ENST00000301067	NM_003482.3	1162	CCt/TTt																																																																														
MDM2	4193	MSKCC	GRCh37	12	69222564	69222564	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	89	571	0	ENST00000462284.1:c.537T>A	p.Asp179Glu	p.D179E	ENST00000462284	NM_002392.5	179	gaT/gaA																																																																														
FLT1	2321	MSKCC	GRCh37	13	28896406	28896406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	194	508	0	ENST00000282397.4:c.3044C>T	p.Ser1015Phe	p.S1015F	ENST00000282397	NM_002019.4	1015	tCc/tTc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434716	99434717	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	244	911	3	ENST00000268035.6:c.803_804delinsGT	p.Thr268Ser	p.T268S	ENST00000268035	NM_000875.3	268	aCC/aGT																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133699	2133699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	237	865	1	ENST00000219476.3:c.3887C>T	p.Ser1296Phe	p.S1296F	ENST00000219476	NM_000548.3	1296	tCc/tTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640868	3640868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	296	1005	1	ENST00000294008.3:c.2771G>T	p.Gly924Val	p.G924V	ENST00000294008	NM_032444.2	924	gGa/gTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9928024	9928024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	180	560	0	ENST00000330684.3:c.1715C>T	p.Ala572Val	p.A572V	ENST00000330684	NM_001134407.1	572	gCt/gTt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041824	14041824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	204	623	0	ENST00000311895.7:c.2371C>T	p.Leu791Phe	p.L791F	ENST00000311895	NM_005236.2	791	Ctt/Ttt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371652	89371652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	125	941	0	ENST00000301030.4:c.188C>T	p.Thr63Ile	p.T63I	ENST00000301030	NM_001256183.1	63	aCc/aTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29557384	29557384	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	60	331	0	ENST00000358273.4:c.3097C>T	p.Gln1033Ter	p.Q1033*	ENST00000358273	NM_001042492.2	1033	Caa/Taa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686956	37686956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	239	694	0	ENST00000447079.4:c.3860C>T	p.Ser1287Phe	p.S1287F	ENST00000447079	NM_015083.1	1287	tCc/tTc																																																																														
MSI2	124540	MSKCC	GRCh37	17	55339536	55339536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	143	802	1	ENST00000284073.2:c.295C>T	p.Arg99Cys	p.R99C	ENST00000284073	NM_138962.2	99	Cgt/Tgt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78727850	78727850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	146	1019	0	ENST00000306801.3:c.695C>T	p.Pro232Leu	p.P232L	ENST00000306801	NM_020761.2	232	cCt/cTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1226483	1226483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	169	1045	0	ENST00000326873.7:c.1139A>G	p.Asn380Ser	p.N380S	ENST00000326873	NM_000455.4	380	aAt/aGt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152167	11152167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	138	883	1	ENST00000344626.4:c.4355C>T	p.Ser1452Phe	p.S1452F	ENST00000344626	NM_003072.3	1452	tCc/tTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976875	18976875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	137	762	0	ENST00000262803.5:c.3260T>C	p.Phe1087Ser	p.F1087S	ENST00000262803	NM_002911.3	1087	tTt/tCt																																																																														
REL	5966	MSKCC	GRCh37	2	61128210	61128210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	107	352	0	ENST00000295025.8:c.386C>T	p.Pro129Leu	p.P129L	ENST00000295025	NM_002908.2	129	cCa/cTa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021697	31021697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	226	673	1	ENST00000375687.4:c.1696G>A	p.Glu566Lys	p.E566K	ENST00000375687	NM_015338.5	566	Gag/Aag																																																																														
SRC	6714	MSKCC	GRCh37	20	36012801	36012801	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	82	301	0	ENST00000358208.4:c.245T>A	p.Leu82Gln	p.L82Q	ENST00000358208		82	cTg/cAg																																																																														
SRC	6714	MSKCC	GRCh37	20	36031729	36031729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	272	953	2	ENST00000358208.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000358208		520	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739060	40739060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	140	793	1	ENST00000373198.4:c.3224C>T	p.Pro1075Leu	p.P1075L	ENST00000373198	NM_133170.3	1075	cCc/cTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40979344	40979344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	231	736	0	ENST00000373198.4:c.1789G>A	p.Asp597Asn	p.D597N	ENST00000373198	NM_133170.3	597	Gac/Aac																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485401	57485402	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	62	459	0	ENST00000371085.3:c.983_984delinsGT	p.Pro328Arg	p.P328R	ENST00000371085	NM_000516.4	328	cCC/cGT																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288384	21288384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	275	882	0	ENST00000354336.3:c.629C>T	p.Pro210Leu	p.P210L	ENST00000354336	NM_005207.3	210	cCt/cTt																																																																														
EP300	2033	MSKCC	GRCh37	22	41545877	41545877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	313	1106	0	ENST00000263253.7:c.2492C>T	p.Ser831Leu	p.S831L	ENST00000263253	NM_001429.3	831	tCa/tTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89478276	89478276	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	156	781	0	ENST00000336596.2:c.2095A>C	p.Thr699Pro	p.T699P	ENST00000336596	NM_005233.5	699	Aca/Cca																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119634978	119634978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	137	406	0	ENST00000316626.5:c.521C>T	p.Ser174Phe	p.S174F	ENST00000316626		174	tCc/tTc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413746	138413746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	64	368	1	ENST00000289153.2:c.1774C>T	p.Gln592Ter	p.Q592*	ENST00000289153	NM_006219.2	592	Cag/Tag																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431025	181431025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	313	962	1	ENST00000325404.1:c.877C>T	p.His293Tyr	p.H293Y	ENST00000325404	NM_003106.3	293	Cac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112103005	112103005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	95	629	1	ENST00000257430.4:c.340C>T	p.Pro114Ser	p.P114S	ENST00000257430	NM_000038.5	114	Cct/Tct																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519493	176519493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	163	1146	0	ENST00000292408.4:c.899C>T	p.Pro300Leu	p.P300L	ENST00000292408	NM_213647.1	300	cCc/cTc																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271506	26271506	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	174	550	0	ENST00000305910.3:c.107T>G	p.Val36Gly	p.V36G	ENST00000305910	NM_003534.2	36	gTg/gGg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554975	106554975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	190	616	0	ENST00000369096.4:c.2092C>T	p.His698Tyr	p.H698Y	ENST00000369096	NM_001198.3	698	Cat/Tat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117650555	117650555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	120	843	1	ENST00000368508.3:c.5303C>T	p.Ser1768Leu	p.S1768L	ENST00000368508	NM_002944.2	1768	tCa/tTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527793	157527794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	82	554	0	ENST00000346085.5:c.5520dup	p.Pro1841SerfsTer15	p.P1841Sfs*15	ENST00000346085	NM_020732.3	1840	att/aTtt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528181	157528181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	241	684	2	ENST00000346085.5:c.5906C>T	p.Pro1969Leu	p.P1969L	ENST00000346085	NM_020732.3	1969	cCa/cTa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508032	106508032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	72	199	0	ENST00000359195.3:c.26C>T	p.Pro9Leu	p.P9L	ENST00000359195	NM_002649.2	9	cCc/cTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859705	151859705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	64	405	0	ENST00000262189.6:c.10957C>T	p.Pro3653Ser	p.P3653S	ENST00000262189	NM_170606.2	3653	Cct/Tct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151876958	151876958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	98	421	0	ENST00000262189.6:c.7403C>A	p.Pro2468His	p.P2468H	ENST00000262189	NM_170606.2	2468	cCt/cAt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965463	68965463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	231	914	0	ENST00000288368.4:c.1075G>A	p.Glu359Lys	p.E359K	ENST00000288368	NM_024870.2	359	Gaa/Aaa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117862948	117862948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	216	822	1	ENST00000297338.2:c.1529C>T	p.Pro510Leu	p.P510L	ENST00000297338	NM_006265.2	510	cCa/cTa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5029854	5029854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	206	779	0	ENST00000381652.3:c.298C>T	p.His100Tyr	p.H100Y	ENST00000381652	NM_004972.3	100	Cat/Tat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410714	63410715	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0023163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	132	446	2	ENST00000330258.3:c.2452_2453delinsAA	p.Gly818Lys	p.G818K	ENST00000330258	NM_152424.3	818	GGg/AAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023249-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			131	304	523	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16055257	16055258	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0023249-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	243	428	0	ENST00000268712.3:c.842+2dup		p.X281_splice	ENST00000268712	NM_006311.3	281																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023249-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	169	271	0	ENST00000349496.5:c.121A>C	p.Thr41Pro	p.T41P	ENST00000349496	NM_001904.3	41	Acc/Ccc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206653840	206653840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	401	871	1	ENST00000367120.3:c.1391C>T	p.Ser464Phe	p.S464F	ENST00000367120	NM_014002.3	464	tCc/tTc																																																																														
FH	2271	MSKCC	GRCh37	1	241667461	241667461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	188	468	1	ENST00000366560.3:c.989C>T	p.Thr330Ile	p.T330I	ENST00000366560	NM_000143.3	330	aCt/aTt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100754	8100754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	372	844	0	ENST00000346208.3:c.728C>T	p.Ser243Phe	p.S243F	ENST00000346208		243	tCc/tTc																																																																														
PGR	5241	MSKCC	GRCh37	11	100962583	100962583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	240	603	0	ENST00000325455.5:c.1814G>A	p.Gly605Glu	p.G605E	ENST00000325455	NM_001202474.3	605	gGa/gAa																																																																														
CBL	867	MSKCC	GRCh37	11	119170471	119170471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	219	468	2	ENST00000264033.4:c.2701C>T	p.Pro901Ser	p.P901S	ENST00000264033	NM_005188.3	901	Cct/Tct																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109764	115109764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	468	966	2	ENST00000257566.3:c.2114C>T	p.Ser705Phe	p.S705F	ENST00000257566	NM_016569.3	705	tCc/tTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004300	29004300	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	172	386	0	ENST00000282397.4:c.993A>C	p.Lys331Asn	p.K331N	ENST00000282397	NM_002019.4	331	aaA/aaC																																																																														
BRCA2	675	MSKCC	GRCh37	13	32936695	32936695	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	143	521	0	ENST00000380152.3:c.7841T>C	p.Leu2614Pro	p.L2614P	ENST00000380152		2614	cTt/cCt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435409	110435409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	355	764	1	ENST00000375856.3:c.2992C>T	p.Pro998Ser	p.P998S	ENST00000375856	NM_003749.2	998	Ccc/Tcc																																																																														
MGA	23269	MSKCC	GRCh37	15	41989091	41989091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	261	686	0	ENST00000219905.7:c.1883C>T	p.Pro628Leu	p.P628L	ENST00000219905	NM_001164273.1	628	cCa/cTa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729162	66729162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	337	908	0	ENST00000307102.5:c.370C>T	p.Pro124Ser	p.P124S	ENST00000307102	NM_002755.3	124	Ccg/Tcg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99452012	99452012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	245	561	0	ENST00000268035.6:c.1346C>T	p.Ala449Val	p.A449V	ENST00000268035	NM_000875.3	449	gCt/gTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857784	9857784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145861983		P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	236	676	0	ENST00000330684.3:c.3617G>A	p.Arg1206Gln	p.R1206Q	ENST00000330684	NM_001134407.1	1206	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031851	10031851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	349	782	1	ENST00000330684.3:c.972G>A	p.Met324Ile	p.M324I	ENST00000330684	NM_001134407.1	324	atG/atA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830958	72830958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	236	577	1	ENST00000268489.5:c.5623G>A	p.Glu1875Lys	p.E1875K	ENST00000268489	NM_006885.3	1875	Gaa/Aaa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89857845	89857845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	352	830	0	ENST00000389301.3:c.1325C>T	p.Pro442Leu	p.P442L	ENST00000389301	NM_000135.2	442	cCc/cTc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89862411	89862411	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	295	729	0	ENST00000389301.3:c.909T>G	p.Ser303Arg	p.S303R	ENST00000389301	NM_000135.2	303	agT/agG																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2225431	2225431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	317	637	0	ENST00000398665.3:c.3641C>T	p.Pro1214Leu	p.P1214L	ENST00000398665	NM_032482.2	1214	cCc/cTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11143975	11143975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	256	620	0	ENST00000344626.4:c.3556G>A	p.Ala1186Thr	p.A1186T	ENST00000344626	NM_003072.3	1186	Gcg/Acg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946809	17946809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	403	914	1	ENST00000458235.1:c.1838G>A	p.Arg613Gln	p.R613Q	ENST00000458235	NM_000215.3	613	cGa/cAa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39251178	39251178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	230	896	1	ENST00000402219.2:c.1175C>T	p.Ser392Phe	p.S392F	ENST00000402219	NM_005633.3	392	tCt/tTt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660221	227660221	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	207	939	0	ENST00000305123.5:c.3234T>G	p.Ser1078Arg	p.S1078R	ENST00000305123	NM_005544.2	1078	agT/agG																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546769	9546769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	146	394	1	ENST00000353224.5:c.1253C>T	p.Ser418Phe	p.S418F	ENST00000353224	NM_177990.2	418	tCc/tTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024225	31024225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	244	663	0	ENST00000375687.4:c.3710C>T	p.Ser1237Phe	p.S1237F	ENST00000375687	NM_015338.5	1237	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730904	40730904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770182876		P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	314	698	1	ENST00000373198.4:c.3631G>A	p.Glu1211Lys	p.E1211K	ENST00000373198	NM_133170.3	1211	Gag/Aag																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264830	46264830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	224	586	0	ENST00000371998.3:c.1700C>T	p.Ser567Phe	p.S567F	ENST00000371998		567	tCc/tTc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42861469	42861469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	319	744	0	ENST00000398585.3:c.401G>A	p.Gly134Glu	p.G134E	ENST00000398585	NM_001135099.1	134	gGa/gAa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42870057	42870057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	300	843	1	ENST00000398585.3:c.115G>A	p.Ala39Thr	p.A39T	ENST00000398585	NM_001135099.1	39	Gct/Act																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934225	49934225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	378	835	1	ENST00000296474.3:c.2282C>T	p.Ser761Phe	p.S761F	ENST00000296474	NM_002447.2	761	tCc/tTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873092	134873092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	257	791	0	ENST00000398015.3:c.1396G>A	p.Asp466Asn	p.D466N	ENST00000398015	NM_004441.4	466	Gac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922300	178922300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	168	505	0	ENST00000263967.3:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000263967	NM_006218.2	357	Cga/Tga																																																																														
TP63	8626	MSKCC	GRCh37	3	189586422	189586422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	276	516	0	ENST00000264731.3:c.1046G>A	p.Gly349Glu	p.G349E	ENST00000264731	NM_003722.4	349	gGa/gAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612285	189612286	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	133	343	1	ENST00000264731.3:c.2037_2038delinsAA	p.Glu680Lys	p.E680K	ENST00000264731	NM_003722.4	679	ggGGag/ggAAag																																																																														
KDR	3791	MSKCC	GRCh37	4	55973911	55973911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	241	597	2	ENST00000263923.4:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000263923	NM_002253.2	469	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1294050	1294050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	488	1231	1	ENST00000310581.5:c.951G>A	p.Trp317Ter	p.W317*	ENST00000310581	NM_198253.2	317	tgG/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	193	553	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295230	1295230	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	193	559	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112154853	112154853	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	295	667	0	ENST00000257430.4:c.1124G>C	p.Gly375Ala	p.G375A	ENST00000257430	NM_000038.5	375	gGc/gCc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449565	149449565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	416	811	2	ENST00000286301.3:c.1381G>A	p.Glu461Lys	p.E461K	ENST00000286301	NM_005211.3	461	Gag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721588	176721588	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	326	720	0	ENST00000439151.2:c.7219A>G	p.Thr2407Ala	p.T2407A	ENST00000439151	NM_022455.4	2407	Act/Gct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163591	32163592	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	350	632	2	ENST00000375023.3:c.5634_5635delinsAA	p.Ala1879Thr	p.A1879T	ENST00000375023	NM_004557.3	1878	caGGct/caAAct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982080	93982080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	336	648	2	ENST00000369303.4:c.1385C>T	p.Ser462Phe	p.S462F	ENST00000369303	NM_004440.3	462	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609759	117609759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	294	664	2	ENST00000368508.3:c.6940G>A	p.Asp2314Asn	p.D2314N	ENST00000368508	NM_002944.2	2314	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708088	117708088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	218	681	2	ENST00000368508.3:c.2089G>A	p.Gly697Arg	p.G697R	ENST00000368508	NM_002944.2	697	Gga/Aga																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026639	6026639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	519	1222	1	ENST00000265849.7:c.1757C>T	p.Ser586Phe	p.S586F	ENST00000265849	NM_000535.5	586	tCc/tTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739958	41739958	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	244	646	0	ENST00000242208.4:c.15G>A	p.Trp5Ter	p.W5*	ENST00000242208	NM_002192.2	5	tgG/tgA																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467669	50467669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	236	697	0	ENST00000331340.3:c.904G>A	p.Glu302Lys	p.E302K	ENST00000331340	NM_006060.4	302	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	150	599	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148515012	148515012	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	290	763	0	ENST00000320356.2:c.1197T>A	p.Asp399Glu	p.D399E	ENST00000320356	NM_004456.4	399	gaT/gaA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873924	151873924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	209	687	0	ENST00000262189.6:c.8614C>T	p.Pro2872Ser	p.P2872S	ENST00000262189	NM_170606.2	2872	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992993	68992993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	254	534	0	ENST00000288368.4:c.1798G>A	p.Glu600Lys	p.E600K	ENST00000288368	NM_024870.2	600	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	632	617	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	632	617	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	632	617	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127911974	127911974	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144776498		P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	232	558	0	ENST00000373547.4:c.896C>T	p.Thr299Met	p.T299M	ENST00000373547	NM_002721.4	299	aCg/aTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040723	47040723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	392	993	2	ENST00000329236.7:c.1124C>T	p.Ser375Phe	p.S375F	ENST00000329236	NM_001204466.1	375	tCc/tTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410327	63410327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	359	1048	0	ENST00000330258.3:c.2840C>T	p.Ser947Phe	p.S947F	ENST00000330258	NM_152424.3	947	tCc/tTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937864	76937864	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	256	870	0	ENST00000373344.5:c.2884T>C	p.Ser962Pro	p.S962P	ENST00000373344	NM_000489.3	962	Tct/Cct																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200029	123200029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	104	402	0	ENST00000218089.9:c.2101C>T	p.His701Tyr	p.H701Y	ENST00000218089	NM_001042749.1	701	Cat/Tat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	95	615	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	136	476	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790813	89790813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			873	51	684	0	ENST00000336032.3:c.200G>A	p.Cys67Tyr	p.C67Y	ENST00000336032	NM_006813.2	67	tGt/tAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	144	572	1	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806228	1806228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	263	740	3	ENST00000260795.2:c.1247G>A	p.Arg416His	p.R416H	ENST00000260795		416	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175148	112175148	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			105	88	259	0	ENST00000257430.4:c.3859delA	p.Ile1287Ter	p.I1287*	ENST00000257430	NM_000038.5	1286	gAa/ga																																																																														
MGA	23269	MSKCC	GRCh37	15	42052633	42052633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	238	528	1	ENST00000219905.7:c.7304G>A	p.Arg2435Gln	p.R2435Q	ENST00000219905	NM_001164273.1	2435	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087892	27087907	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCACCCAGTGGCC	CGGCCACCCAGTGGCC	-			P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	115	647	1	ENST00000324856.7:c.2179_2194del	p.Arg727SerfsTer10	p.R727Sfs*10	ENST00000324856	NM_006015.4	727	CGGCCACCCAGTGGCCag/ag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120229	70120230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCA			P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			648	147	753	0	ENST00000245479.2:c.1232_1235dup	p.His413AlafsTer166	p.H413Afs*166	ENST00000245479	NM_000346.3	411	cag/cAGCAag																																																																														
STK11	6794	MSKCC	GRCh37	19	1220579	1220579	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	197	722	0	ENST00000326873.7:c.598del		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																															
BARD1	580	MSKCC	GRCh37	2	215674254	215674268	+	inframe_deletion	In_Frame_Del	DEL	TCCTCGGCTGCCGGT	TCCTCGGCTGCCGGT	-			P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	58	570	0	ENST00000260947.4:c.26_40del	p.Asn9_Arg13del	p.N9_R13del	ENST00000260947	NM_000465.2	9	aACCGGCAGCCGAGGAtc/atc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259664	89259664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			146	33	279	0	ENST00000336596.2:c.808T>C	p.Cys270Arg	p.C270R	ENST00000336596	NM_005233.5	270	Tgc/Cgc																																																																														
FANCC	2176	MSKCC	GRCh37	9	98011444	98011444	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	178	584	0	ENST00000289081.3:c.130T>A	p.Phe44Ile	p.F44I	ENST00000289081	NM_000136.2	44	Ttc/Atc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440643	56440643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	37	589	0	ENST00000407977.2:c.575C>G	p.Pro192Arg	p.P192R	ENST00000407977		192	cCg/cGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	239	642	0				ENST00000310581	NM_198253.2																																																																																
ALOX12B	242	MSKCC	GRCh37	17	7978952	7978952	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139689690		P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	181	674	1	ENST00000319144.4:c.1615G>A	p.Glu539Lys	p.E539K	ENST00000319144	NM_001139.2	539	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	261	680	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652452	206652452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	277	693	1	ENST00000367120.3:c.1159C>T	p.Pro387Ser	p.P387S	ENST00000367120	NM_014002.3	387	Cct/Tct																																																																														
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	316	805	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	287	739	2	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55956205	55956205	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148668147		P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	354	882	1	ENST00000263923.4:c.3110C>T	p.Ser1037Leu	p.S1037L	ENST00000263923	NM_002253.2	1037	tCg/tTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858549	9858549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	333	721	0	ENST00000330684.3:c.2852G>A	p.Gly951Glu	p.G951E	ENST00000330684	NM_001134407.1	951	gGg/gAg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115729	8115729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	268	572	0	ENST00000346208.3:c.1075G>A	p.Glu359Lys	p.E359K	ENST00000346208		359	Gaa/Aaa																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166010	118166010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	307	634	0	ENST00000369448.3:c.520C>T	p.Arg174Trp	p.R174W	ENST00000369448	NM_017709.3	174	Cgg/Tgg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462641	40462641	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147384091		P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	211	796	1	ENST00000345506.4:c.2339C>T	p.Ser780Leu	p.S780L	ENST00000345506	NM_003152.3	780	tCg/tTg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113095	209113095	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	168	315	0	ENST00000345146.2:c.412C>T	p.Gln138Ter	p.Q138*	ENST00000345146	NM_005896.2	138	Caa/Taa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367278	50367278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	252	476	1	ENST00000331340.3:c.85G>A	p.Glu29Lys	p.E29K	ENST00000331340	NM_006060.4	29	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349058	89349058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	532	1159	4	ENST00000301030.4:c.3892G>A	p.Asp1298Asn	p.D1298N	ENST00000301030	NM_001256183.1	1298	Gat/Aat																																																																														
NF1	4763	MSKCC	GRCh37	17	29560043	29560043	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	117	403	0	ENST00000358273.4:c.3520C>T	p.Gln1174Ter	p.Q1174*	ENST00000358273	NM_001042492.2	1174	Cag/Tag																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771562	112771562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	137	680	0	ENST00000369452.4:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000369452	NM_007373.3	579	Cgt/Tgt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761021	59761021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	560	757	0	ENST00000259008.2:c.3386C>T	p.Ser1129Phe	p.S1129F	ENST00000259008	NM_032043.2	1129	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	338	643	0	ENST00000361570.3:c.436C>T	p.Pro146Ser	p.P146S	ENST00000361570	NM_058195.3	146	Cct/Tct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	338	643	0	ENST00000361570.3:c.436C>T	p.Pro146Ser	p.P146S	ENST00000361570	NM_058195.3	146	Cct/Tct																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355186	15355186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	487	1151	2	ENST00000263377.2:c.2437C>T	p.Pro813Ser	p.P813S	ENST00000263377	NM_058243.2	813	Cca/Tca																																																																														
NF1	4763	MSKCC	GRCh37	17	29670153	29670153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	263	593	1	ENST00000358273.4:c.7189G>A	p.Gly2397Arg	p.G2397R	ENST00000358273	NM_001042492.2	2397	Ggg/Agg																																																																														
ALK	238	MSKCC	GRCh37	2	29419721	29419721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	512	652	0	ENST00000389048.3:c.4079G>A	p.Arg1360Gln	p.R1360Q	ENST00000389048	NM_004304.4	1360	cGg/cAg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156836738	156836738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	396	1032	0	ENST00000524377.1:c.396G>A	p.Trp132Ter	p.W132*	ENST00000524377	NM_002529.3	132	tgG/tgA																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943308	71943308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	207	916	0	ENST00000298229.2:c.1640C>T	p.Ser547Phe	p.S547F	ENST00000298229	NM_001567.3	547	tCc/tTc																																																																														
CCND2	894	MSKCC	GRCh37	12	4385232	4385232	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	158	730	0	ENST00000261254.3:c.257G>C	p.Arg86Pro	p.R86P	ENST00000261254	NM_001759.3	86	cGt/cCt																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871887	12871887	+	splice_region_variant,3_prime_UTR_variant	Splice_Region	SNP	C	C	T	rs200321335		P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	68	278	0	ENST00000228872.4:c.*7C>T		p.X3_splice	ENST00000228872	NM_004064.3	3																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244517	46244517	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	179	725	0	ENST00000334344.6:c.2611C>T	p.Gln871Ter	p.Q871*	ENST00000334344	NM_152641.2	871	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427546	49427546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	173	676	0	ENST00000301067.7:c.10942C>T	p.Pro3648Ser	p.P3648S	ENST00000301067	NM_003482.3	3648	Ccg/Tcg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434604	49434604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	214	901	0	ENST00000301067.7:c.6949G>A	p.Gly2317Ser	p.G2317S	ENST00000301067	NM_003482.3	2317	Ggt/Agt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562483	21562484	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCGA			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	86	169	0	ENST00000382592.4:c.1435_1436insTCGCCC	p.Ala478_Pro479insLeuAla	p.A478_P479insLA	ENST00000382592	NM_014572.2	479	ccg/cTCGCCCcg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915120	32915120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	274	749	1	ENST00000380152.3:c.6628G>A	p.Glu2210Lys	p.E2210K	ENST00000380152		2210	Gaa/Aaa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347934	73347934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	207	402	0	ENST00000377767.4:c.1127C>T	p.Ala376Val	p.A376V	ENST00000377767	NM_014953.3	376	gCt/gTt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396964	396964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	481	865	0	ENST00000262320.3:c.62C>A	p.Pro21His	p.P21H	ENST00000262320	NM_003502.3	21	cCc/cAc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646498	23646498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	412	882	1	ENST00000261584.4:c.1369G>A	p.Glu457Lys	p.E457K	ENST00000261584	NM_024675.3	457	Gaa/Aaa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974877	15974877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	335	729	0	ENST00000268712.3:c.3998C>T	p.Thr1333Ile	p.T1333I	ENST00000268712	NM_006311.3	1333	aCc/aTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246274	41246274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	217	902	0	ENST00000357654.3:c.1274C>T	p.Ser425Phe	p.S425F	ENST00000357654	NM_007294.3	425	tCt/tTt																																																																														
INSR	3643	MSKCC	GRCh37	19	7120629	7120629	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	170	759	0	ENST00000302850.5:c.3659+2T>A		p.X1220_splice	ENST00000302850	NM_000208.2	1220																																																																															
JAK3	3718	MSKCC	GRCh37	19	17952292	17952292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	457	868	3	ENST00000458235.1:c.1048C>T	p.Arg350Trp	p.R350W	ENST00000458235	NM_000215.3	350	Cgg/Tgg																																																																														
ERF	2077	MSKCC	GRCh37	19	42759150	42759150	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	101	433	0	ENST00000222329.4:c.2T>C	p.Met1?	p.M1?	ENST00000222329	NM_006494.2	1	aTg/aCg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371592	225371592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	283	803	0	ENST00000264414.4:c.1012C>T	p.Pro338Ser	p.P338S	ENST00000264414	NM_003590.4	338	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710549	40710549	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	390	891	1	ENST00000373198.4:c.4302C>A	p.Asn1434Lys	p.N1434K	ENST00000373198	NM_133170.3	1434	aaC/aaA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827942	40827942	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	389	803	0	ENST00000373198.4:c.2486A>G	p.Lys829Arg	p.K829R	ENST00000373198	NM_133170.3	829	aAg/aGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306530	41306530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	224	569	0	ENST00000373198.4:c.1129C>T	p.Leu377Phe	p.L377F	ENST00000373198	NM_133170.3	377	Ctc/Ttc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845396	42845396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	361	814	0	ENST00000398585.3:c.866G>C	p.Arg289Pro	p.R289P	ENST00000398585	NM_001135099.1	289	cGc/cCc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950694	38950694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	247	581	0	ENST00000357387.3:c.3256C>T	p.Pro1086Ser	p.P1086S	ENST00000357387	NM_152756.3	1086	Cct/Tct																																																																														
RAD50	10111	MSKCC	GRCh37	5	131940672	131940672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	352	615	0	ENST00000265335.6:c.2699C>T	p.Ser900Phe	p.S900F	ENST00000265335		900	tCt/tTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32182010	32182011	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	381	997	3	ENST00000375023.3:c.2043_2044delinsAA	p.Gly682Ser	p.G682S	ENST00000375023	NM_004557.3	681	gtGGgt/gtAAgt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708980	117708981	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	111	684	2	ENST00000368508.3:c.1976_1977delinsTT	p.Pro659Leu	p.P659L	ENST00000368508	NM_002944.2	659	cCC/cTT																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29195889	29195889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	407	1068	1	ENST00000240100.2:c.709G>A	p.Glu237Lys	p.E237K	ENST00000240100	NM_001394.6	237	Gaa/Aaa																																																																														
LYN	4067	MSKCC	GRCh37	8	56864641	56864641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	697	910	0	ENST00000519728.1:c.604C>T	p.Pro202Ser	p.P202S	ENST00000519728	NM_002350.3	202	Ccc/Tcc																																																																														
TEK	7010	MSKCC	GRCh37	9	27213554	27213554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	171	851	1	ENST00000380036.4:c.2950G>A	p.Gly984Arg	p.G984R	ENST00000380036	NM_000459.3	984	Gga/Aga																																																																														
SYK	6850	MSKCC	GRCh37	9	93624597	93624597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200498885		P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	294	614	2	ENST00000375746.1:c.688G>A	p.Glu230Lys	p.E230K	ENST00000375746	NM_001174167.1	230	Gag/Aag																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250208	110250208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	339	728	0	ENST00000374672.4:c.467C>T	p.Ala156Val	p.A156V	ENST00000374672	NM_004235.4	156	gCc/gTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401390	139401390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	404	849	1	ENST00000277541.6:c.3679C>T	p.Pro1227Ser	p.P1227S	ENST00000277541	NM_017617.3	1227	Ccc/Tcc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911636	39911636	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	77	400	0	ENST00000378444.4:c.4994T>A	p.Leu1665Gln	p.L1665Q	ENST00000378444	NM_001123385.1	1665	cTg/cAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76872090	76872090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	250	376	0	ENST00000373344.5:c.5557C>T	p.His1853Tyr	p.H1853Y	ENST00000373344	NM_000489.3	1853	Cac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	49	661	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	34	488	0				ENST00000310581	NM_198253.2																																																																																
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	65	337	0	ENST00000374080.3:c.130G>T	p.Gly44Cys	p.G44C	ENST00000374080		44	Ggt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247247	153247247	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	37	532	0	ENST00000281708.4:c.1555T>C	p.Tyr519His	p.Y519H	ENST00000281708	NM_033632.3	519	Tat/Cat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420607	49420607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	48	658	2	ENST00000301067.7:c.15142C>T	p.Arg5048Cys	p.R5048C	ENST00000301067	NM_003482.3	5048	Cgt/Tgt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270111	66270111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	52	434	0	ENST00000273854.3:c.1771G>A	p.Gly591Ser	p.G591S	ENST00000273854	NM_004439.5	591	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023724	27023734	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCCCCTCC	GCGGCCCCTCC	-			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	51	612	0	ENST00000324856.7:c.836_846del	p.Pro279ArgfsTer117	p.P279Rfs*117	ENST00000324856	NM_006015.4	277	gGCGGCCCCTCC/g																																																																														
CCND2	894	MSKCC	GRCh37	12	4385319	4385319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	53	442	0	ENST00000261254.3:c.344C>T	p.Thr115Ile	p.T115I	ENST00000261254	NM_001759.3	115	aCc/aTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900636	3900636	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	64	634	1	ENST00000262367.5:c.460C>T	p.Gln154Ter	p.Q154*	ENST00000262367	NM_004380.2	154	Caa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831728	72831728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	59	627	0	ENST00000268489.5:c.4853T>C	p.Val1618Ala	p.V1618A	ENST00000268489	NM_006885.3	1618	gTg/gCg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094865	11094865	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	64	762	0	ENST00000344626.4:c.38G>T	p.Arg13Leu	p.R13L	ENST00000344626	NM_003072.3	13	cGg/cTg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967002	18967002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	49	510	0	ENST00000262803.5:c.1717G>A	p.Glu573Lys	p.E573K	ENST00000262803	NM_002911.3	573	Gag/Aag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098956	178098956	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	38	402	0	ENST00000397062.3:c.89T>C	p.Leu30Pro	p.L30P	ENST00000397062	NM_006164.4	30	cTt/cCt																																																																														
EP300	2033	MSKCC	GRCh37	22	41513283	41513283	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	51	569	0	ENST00000263253.7:c.187C>T	p.Gln63Ter	p.Q63*	ENST00000263253	NM_001429.3	63	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295375	1295375	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	36	303	4				ENST00000310581	NM_198253.2																																																																																
HIST1H3D	8351	MSKCC	GRCh37	6	26197336	26197336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	51	598	0	ENST00000356476.2:c.143C>T	p.Ala48Val	p.A48V	ENST00000356476		48	gCt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	94	440	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	20	258	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0023759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	27	303	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0023759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	27	303	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385182	41385182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	31	420	0	ENST00000373198.4:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000373198	NM_133170.3	260	cGg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0023759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	27	303	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224701	36224701	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	51	533	1	ENST00000222270.7:c.7087G>T	p.Glu2363Ter	p.E2363*	ENST00000222270	NM_014727.1	2363	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	133	447	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	456	792	2	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	160	577	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662582	117662582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	142	555	0	ENST00000368508.3:c.4883G>A	p.Gly1628Glu	p.G1628E	ENST00000368508	NM_002944.2	1628	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	166	484	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	166	484	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686868	117686868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	160	462	0	ENST00000368508.3:c.2849C>T	p.Ser950Phe	p.S950F	ENST00000368508	NM_002944.2	950	tCt/tTt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591116	67591116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	114	400	1	ENST00000274335.5:c.1709T>C	p.Leu570Pro	p.L570P	ENST00000274335		570	cTt/cCt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	166	484	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256666	16256666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	175	516	0	ENST00000375759.3:c.3931C>T	p.Pro1311Ser	p.P1311S	ENST00000375759	NM_015001.2	1311	Cct/Tct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	142	405	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	142	405	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
SESN3	143686	MSKCC	GRCh37	11	94924638	94924638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	203	760	0	ENST00000536441.1:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000536441	NM_144665.3	91	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228130	36228130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	192	758	2	ENST00000222270.7:c.7516C>T	p.Pro2506Ser	p.P2506S	ENST00000222270	NM_014727.1	2506	Ccc/Tcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023819	27023819	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	138	489	1	ENST00000324856.7:c.925C>T	p.Gln309Ter	p.Q309*	ENST00000324856	NM_006015.4	309	Cag/Tag																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782159	9782159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	160	627	1	ENST00000377346.4:c.2182C>T	p.Leu728Phe	p.L728F	ENST00000377346	NM_005026.3	728	Ctc/Ttc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259465	16259465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	128	484	1	ENST00000375759.3:c.6730C>A	p.Gln2244Lys	p.Q2244K	ENST00000375759	NM_015001.2	2244	Cag/Aag																																																																														
STK40	83931	MSKCC	GRCh37	1	36814337	36814337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	221	676	1	ENST00000373129.3:c.703G>A	p.Gly235Arg	p.G235R	ENST00000373129	NM_032017.1	235	Ggg/Agg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330651	65330651	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	136	372	0	ENST00000342505.4:c.995T>C	p.Val332Ala	p.V332A	ENST00000342505	NM_002227.2	332	gTt/gCt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276355	115276355	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	209	692	0	ENST00000438362.2:c.973C>T	p.Gln325Ter	p.Q325*	ENST00000438362	NM_001242891.1	325	Cag/Tag																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551502	150551503	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	216	841	0	ENST00000369026.2:c.504_505delinsAA	p.Glu169Lys	p.E169K	ENST00000369026	NM_021960.4	168	gaGGag/gaAAag																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498707	246498707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	259	712	0	ENST00000388985.4:c.298G>A	p.Asp100Asn	p.D100N	ENST00000388985		100	Gac/Aac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944166	71944166	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	174	593	0	ENST00000298229.2:c.1999T>A	p.Ser667Thr	p.S667T	ENST00000298229	NM_001567.3	667	Tcc/Acc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948382	71948383	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	207	929	2	ENST00000298229.2:c.3094_3095delinsTT	p.Pro1032Phe	p.P1032F	ENST00000298229	NM_001567.3	1032	CCt/TTt																																																																														
ATM	472	MSKCC	GRCh37	11	108186809	108186809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	159	704	0	ENST00000278616.4:c.6167C>T	p.Pro2056Leu	p.P2056L	ENST00000278616	NM_000051.3	2056	cCc/cTc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022790	12022790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	124	530	0	ENST00000396373.4:c.896G>A	p.Arg299Lys	p.R299K	ENST00000396373	NM_001987.4	299	aGg/aAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244367	46244367	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	212	581	0	ENST00000334344.6:c.2462del	p.Leu821Ter	p.L821*	ENST00000334344	NM_152641.2	821	Tta/ta																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432566	49432566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	186	715	0	ENST00000301067.7:c.8573C>T	p.Ser2858Phe	p.S2858F	ENST00000301067	NM_003482.3	2858	tCc/tTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117443	115117443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	146	521	1	ENST00000257566.3:c.731C>T	p.Ser244Phe	p.S244F	ENST00000257566	NM_016569.3	244	tCc/tTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907389	32907389	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	145	510	0	ENST00000380152.3:c.1774T>C	p.Tyr592His	p.Y592H	ENST00000380152		592	Tat/Cat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911487	32911487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	180	513	0	ENST00000380152.3:c.2995C>T	p.Pro999Ser	p.P999S	ENST00000380152		999	Cca/Tca																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609667	81609667	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	199	626	0	ENST00000298171.2:c.1265G>A	p.Trp422Ter	p.W422*	ENST00000298171	NM_000369.2	422	tGg/tAg																																																																														
BLM	641	MSKCC	GRCh37	15	91292713	91292714	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	207	645	2	ENST00000355112.3:c.215_216delinsTA	p.Ser72Leu	p.S72L	ENST00000355112	NM_000057.2	72	tCC/tTA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828396	72828396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	182	540	0	ENST00000268489.5:c.8185C>T	p.His2729Tyr	p.H2729Y	ENST00000268489	NM_006885.3	2729	Cat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578547	7578548	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	441	823	2	ENST00000269305.4:c.382_383delinsTT	p.Pro128Phe	p.P128F	ENST00000269305	NM_001126112.2	128	CCt/TTt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979663	7979663	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	233	434	0	ENST00000319144.4:c.1363-1G>A		p.X455_splice	ENST00000319144	NM_001139.2	455																																																																															
NF1	4763	MSKCC	GRCh37	17	29576057	29576057	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	200	661	0	ENST00000358273.4:c.4030G>T	p.Glu1344Ter	p.E1344*	ENST00000358273	NM_001042492.2	1344	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29664880	29664880	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	321	497	0	ENST00000358273.4:c.6686G>A	p.Trp2229Ter	p.W2229*	ENST00000358273	NM_001042492.2	2229	tGg/tAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435689	56435690	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	145	509	4	ENST00000407977.2:c.1447_1448delinsTT	p.Thr483Leu	p.T483L	ENST00000407977		483	ACg/TTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119911	70119911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	161	503	0	ENST00000245479.2:c.913G>A	p.Gly305Arg	p.G305R	ENST00000245479	NM_000346.3	305	Ggg/Agg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096033	11096033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	185	737	0	ENST00000344626.4:c.307C>T	p.His103Tyr	p.H103Y	ENST00000344626	NM_003072.3	103	Cat/Tat																																																																														
UPF1	5976	MSKCC	GRCh37	19	18971135	18971135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	255	735	0	ENST00000262803.5:c.2188C>T	p.Arg730Cys	p.R730C	ENST00000262803	NM_002911.3	730	Cgt/Tgt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47710042	47710042	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	122	406	0	ENST00000233146.2:c.2759A>T	p.Asn920Ile	p.N920I	ENST00000233146	NM_000251.2	920	aAt/aTt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030657	48030657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	182	609	0	ENST00000234420.5:c.3271C>T	p.Leu1091Phe	p.L1091F	ENST00000234420	NM_000179.2	1091	Ctt/Ttt																																																																														
ERG	2078	MSKCC	GRCh37	21	39775497	39775497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	180	673	2	ENST00000288319.7:c.523G>A	p.Asp175Asn	p.D175N	ENST00000288319	NM_182918.3	175	Gac/Aac																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655202	45655202	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	139	517	1	ENST00000407780.3:c.650T>C	p.Ile217Thr	p.I217T	ENST00000407780	NM_001283052.1	217	aTa/aCa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24143259	24143259	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	433	807	0	ENST00000263121.7:c.491T>A	p.Phe164Tyr	p.F164Y	ENST00000263121	NM_003073.3	164	tTc/tAc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902632	1902632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	221	701	0	ENST00000382891.5:c.251C>T	p.Ser84Phe	p.S84F	ENST00000382891	NM_133335.3	84	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55979471	55979471	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	129	502	0	ENST00000263923.4:c.976G>A	p.Glu326Lys	p.E326K	ENST00000263923	NM_002253.2	326	Gaa/Aaa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753095	57753101	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAGGA	GGCAGGA	-			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	180	496	0	ENST00000274289.3:c.915_921del	p.Pro306SerfsTer3	p.P306Sfs*3	ENST00000274289	NM_006622.3	305	gcTCCTGCC/gc																																																																														
APC	324	MSKCC	GRCh37	5	112174853	112174853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	145	412	0	ENST00000257430.4:c.3562C>T	p.Pro1188Ser	p.P1188S	ENST00000257430	NM_000038.5	1188	Cct/Tct																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057767	180057767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	177	471	0	ENST00000261937.6:c.188G>A	p.Gly63Glu	p.G63E	ENST00000261937	NM_182925.4	63	gGa/gAa																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983136	149983136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	214	751	1	ENST00000253339.5:c.3122C>T	p.Pro1041Leu	p.P1041L	ENST00000253339		1041	cCt/cTt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001480	150001480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	253	788	0	ENST00000253339.5:c.2124A>G	p.Ile708Met	p.I708M	ENST00000253339		708	atA/atG																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522250	157522250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	211	665	1	ENST00000346085.5:c.4522C>T	p.His1508Tyr	p.H1508Y	ENST00000346085	NM_020732.3	1508	Cat/Tat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151843715	151843715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	150	477	0	ENST00000262189.6:c.14000C>T	p.Thr4667Ile	p.T4667I	ENST00000262189	NM_170606.2	4667	aCc/aTc																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38189029	38189029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	271	919	0	ENST00000317025.8:c.985G>A	p.Glu329Lys	p.E329K	ENST00000317025	NM_023034.1	329	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76890138	76890138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	215	346	0	ENST00000373344.5:c.4756C>T	p.Pro1586Ser	p.P1586S	ENST00000373344	NM_000489.3	1586	Cca/Tca																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152858164	152858165	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0024070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	209	444	3	ENST00000406277.2:c.450_451delinsTT	p.Gln151Ter	p.Q151*	ENST00000406277	NM_152274.4	150	ctCCag/ctTTag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967135	25967135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	90	323	0	ENST00000435504.4:c.2071C>T	p.Pro691Ser	p.P691S	ENST00000435504		691	Cca/Tca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	164	525	1	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	245	332	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	245	332	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645286	67645286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	129	517	1	ENST00000264010.4:c.551C>T	p.Pro184Leu	p.P184L	ENST00000264010	NM_006565.3	184	cCa/cTa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974826	15974826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	150	526	0	ENST00000268712.3:c.4049C>T	p.Ser1350Phe	p.S1350F	ENST00000268712	NM_006311.3	1350	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	123	475	0	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967209	93967209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	150	567	0	ENST00000369303.4:c.2143G>A	p.Glu715Lys	p.E715K	ENST00000369303	NM_004440.3	715	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117645576	117645576	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	153	552	0	ENST00000368508.3:c.5560G>A	p.Asp1854Asn	p.D1854N	ENST00000368508	NM_002944.2	1854	Gat/Aat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259967	16259967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	167	653	1	ENST00000375759.3:c.7232C>T	p.Ser2411Leu	p.S2411L	ENST00000375759	NM_015001.2	2411	tCg/tTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476265	88476265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	147	725	0	ENST00000360948.2:c.1867G>A	p.Gly623Arg	p.G623R	ENST00000360948	NM_001012338.2	623	Gga/Aga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	245	332	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
TP63	8626	MSKCC	GRCh37	3	189584548	189584548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	150	511	2	ENST00000264731.3:c.844G>A	p.Gly282Arg	p.G282R	ENST00000264731	NM_003722.4	282	Gga/Aga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	197	386	0	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	369	716	1	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956771	68956771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	161	675	1	ENST00000288368.4:c.889C>T	p.Arg297Cys	p.R297C	ENST00000288368	NM_024870.2	297	Cgt/Tgt																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182052	38182052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1190702008		P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	120	416	1	ENST00000396334.3:c.676G>A	p.Glu226Lys	p.E226K	ENST00000396334	NM_002468.4	226	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44970634	44970634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	194	315	0	ENST00000377967.4:c.4184C>T	p.Pro1395Leu	p.P1395L	ENST00000377967	NM_021140.2	1395	cCa/cTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170061	32170061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	157	669	0	ENST00000375023.3:c.3547G>A	p.Gly1183Arg	p.G1183R	ENST00000375023	NM_004557.3	1183	Gga/Aga																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520183	9520183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	136	457	3	ENST00000353224.5:c.2086G>A	p.Gly696Arg	p.G696R	ENST00000353224	NM_177990.2	696	Gga/Aga																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864769	68864769	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	124	436	0	ENST00000288368.4:c.140C>T	p.Ser47Leu	p.S47L	ENST00000288368	NM_024870.2	47	tCg/tTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923328	9923328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	149	498	0	ENST00000330684.3:c.1959G>A	p.Met653Ile	p.M653I	ENST00000330684	NM_001134407.1	653	atG/atA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295253	+	upstream_gene_variant	5'Flank	ONP	GAGG	GAGG	AAGA			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	250	394	0				ENST00000310581	NM_198253.2																																																																																
NF1	4763	MSKCC	GRCh37	17	29652904	29652904	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	140	401	0	ENST00000358273.4:c.4902T>A	p.Tyr1634Ter	p.Y1634*	ENST00000358273	NM_001042492.2	1634	taT/taA																																																																														
SDHA	6389	MSKCC	GRCh37	5	231076	231076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	211	391	1	ENST00000264932.6:c.856C>T	p.Pro286Ser	p.P286S	ENST00000264932	NM_004168.2	286	Cct/Tct																																																																														
JAK1	3716	MSKCC	GRCh37	1	65313316	65313316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	123	600	0	ENST00000342505.4:c.1798G>T	p.Gly600Trp	p.G600W	ENST00000342505	NM_002227.2	600	Ggg/Tgg																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176085803	176085803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	176	511	0	ENST00000367669.3:c.983C>T	p.Ser328Phe	p.S328F	ENST00000367669	NM_022457.5	328	tCc/tTc																																																																														
WT1	7490	MSKCC	GRCh37	11	32421535	32421536	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	143	571	3	ENST00000332351.3:c.1056_1057delinsTT	p.Gln353Ter	p.Q353*	ENST00000332351	NM_024426.4	352	gcCCaa/gcTTaa																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518491	69518491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	90	317	0	ENST00000294312.3:c.154C>T	p.Pro52Ser	p.P52S	ENST00000294312	NM_005117.2	52	Ccc/Tcc																																																																														
POLE	5426	MSKCC	GRCh37	12	133218876	133218876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	170	692	0	ENST00000320574.5:c.5060C>T	p.Ser1687Phe	p.S1687F	ENST00000320574	NM_006231.2	1687	tCc/tTc																																																																														
RAD51	5888	MSKCC	GRCh37	15	41021737	41021737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	150	447	0	ENST00000267868.3:c.679C>T	p.Leu227Phe	p.L227F	ENST00000267868	NM_002875.4	227	Ctt/Ttt																																																																														
MGA	23269	MSKCC	GRCh37	15	42042050	42042050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	188	629	2	ENST00000219905.7:c.6245C>T	p.Ala2082Val	p.A2082V	ENST00000219905	NM_001164273.1	2082	gCt/gTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857224	9857224	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	143	479	0	ENST00000330684.3:c.4177T>A	p.Ser1393Thr	p.S1393T	ENST00000330684	NM_001134407.1	1393	Tcc/Acc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041782	14041782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	148	517	0	ENST00000311895.7:c.2329C>T	p.Gln777Ter	p.Q777*	ENST00000311895	NM_005236.2	777	Cag/Tag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347680	89347680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	117	589	1	ENST00000301030.4:c.5270C>T	p.Ser1757Phe	p.S1757F	ENST00000301030	NM_001256183.1	1757	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29509550	29509550	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	139	479	0	ENST00000358273.4:c.755T>A	p.Leu252Ter	p.L252*	ENST00000358273	NM_001042492.2	252	tTg/tAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29528485	29528486	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	177	588	0	ENST00000358273.4:c.1242_1243delinsTT	p.His415Tyr	p.H415Y	ENST00000358273	NM_001042492.2	414	ctCCat/ctTTat																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740603	58740603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	189	589	1	ENST00000305921.3:c.1508C>T	p.Ser503Leu	p.S503L	ENST00000305921	NM_003620.3	503	tCa/tTa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59937253	59937253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	176	529	0	ENST00000259008.2:c.109A>G	p.Asn37Asp	p.N37D	ENST00000259008	NM_032043.2	37	Aac/Gac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212480	36212480	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	157	635	0	ENST00000222270.7:c.2231T>G	p.Leu744Trp	p.L744W	ENST00000222270	NM_014727.1	744	tTg/tGg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31393199	31393199	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	112	428	0	ENST00000328111.2:c.2287A>T	p.Asn763Tyr	p.N763Y	ENST00000328111	NM_006892.3	763	Aat/Tat																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702561	52702561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	175	691	0	ENST00000394830.3:c.337A>G	p.Thr113Ala	p.T113A	ENST00000394830	NM_018313.4	113	Act/Gct																																																																														
MITF	4286	MSKCC	GRCh37	3	70014032	70014032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	150	413	0	ENST00000352241.4:c.1196C>T	p.Ser399Phe	p.S399F	ENST00000352241	NM_198159.2	399	tCc/tTc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403593	138403593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	167	601	3	ENST00000289153.2:c.2189C>T	p.Ala730Val	p.A730V	ENST00000289153	NM_006219.2	730	gCc/gTc																																																																														
ATR	545	MSKCC	GRCh37	3	142257420	142257420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	132	482	0	ENST00000350721.4:c.3629C>T	p.Ser1210Phe	p.S1210F	ENST00000350721	NM_001184.3	1210	tCc/tTc																																																																														
BCL6	604	MSKCC	GRCh37	3	187446217	187446217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	147	697	1	ENST00000232014.4:c.1471C>T	p.His491Tyr	p.H491Y	ENST00000232014	NM_001130845.1	491	Cac/Tac																																																																														
TET2	54790	MSKCC	GRCh37	4	106197281	106197281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	90	342	0	ENST00000380013.4:c.5614C>T	p.Leu1872Phe	p.L1872F	ENST00000380013	NM_001127208.2	1872	Ctc/Ttc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674224	86674224	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	202	351	0	ENST00000274376.6:c.2356A>T	p.Thr786Ser	p.T786S	ENST00000274376	NM_002890.2	786	Acc/Tcc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149453015	149453015	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	126	438	0	ENST00000286301.3:c.931C>T	p.Gln311Ter	p.Q311*	ENST00000286301	NM_005211.3	311	Cag/Tag																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324128	31324128	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	68	441	0	ENST00000412585.2:c.435G>C	p.Lys145Asn	p.K145N	ENST00000412585	NM_005514.6	145	aaG/aaC																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166850	32166850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	172	707	1	ENST00000375023.3:c.4388G>A	p.Gly1463Glu	p.G1463E	ENST00000375023	NM_004557.3	1463	gGg/gAg																																																																														
LYN	4067	MSKCC	GRCh37	8	56922655	56922655	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	136	558	1	ENST00000519728.1:c.1525C>T	p.Gln509Ter	p.Q509*	ENST00000519728	NM_002350.3	509	Cag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069604	69069604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	167	613	0	ENST00000288368.4:c.4279G>A	p.Glu1427Lys	p.E1427K	ENST00000288368	NM_024870.2	1427	Gaa/Aaa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98242859	98242859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	134	393	0	ENST00000331920.6:c.758C>T	p.Pro253Leu	p.P253L	ENST00000331920	NM_000264.3	253	cCt/cTt																																																																														
ABL1	25	MSKCC	GRCh37	9	133760688	133760688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	206	796	0	ENST00000318560.5:c.3011C>T	p.Pro1004Leu	p.P1004L	ENST00000318560	NM_005157.4	1004	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	117	273	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0024144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	210	392	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0024144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	210	392	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1447	296	758	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578516	7578516	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1529	303	754	0	ENST00000269305.4:c.414delC	p.Lys139ArgfsTer31	p.K139Rfs*31	ENST00000269305	NM_001126112.2	138	gcC/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0024144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	210	392	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76909663	76909663	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	105	343	0	ENST00000373344.5:c.4242A>C	p.Glu1414Asp	p.E1414D	ENST00000373344	NM_000489.3	1414	gaA/gaC																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	181	606	0	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	61	568	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	118	679	1	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435667	18435667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	54	313	2	ENST00000266497.5:c.652G>A	p.Glu218Lys	p.E218K	ENST00000266497		218	Gaa/Aaa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347756	347756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	26	692	0	ENST00000262320.3:c.1750G>A	p.Ala584Thr	p.A584T	ENST00000262320	NM_003502.3	584	Gct/Act																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737622	145737624	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	19	647	0	ENST00000428558.2:c.3139_3141del	p.Glu1047del	p.E1047del	ENST00000428558	NM_004260.3	1047	GAG/-																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	63	717	8	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
BCL6	604	MSKCC	GRCh37	3	187447240	187447240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	92	497	1	ENST00000232014.4:c.953C>T	p.Pro318Leu	p.P318L	ENST00000232014	NM_001130845.1	318	cCc/cTc																																																																														
CASP8	841	MSKCC	GRCh37	2	202149974	202149974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	86	538	1	ENST00000358485.4:c.1415G>A	p.Arg472Gln	p.R472Q	ENST00000358485	NM_001080125.1	472	cGa/cAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	87	253	1	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	87	253	1	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	87	253	1	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	70	391	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
RB1	5925	MSKCC	GRCh37	13	48953748	48953748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	89	293	1	ENST00000267163.4:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000267163	NM_000321.2	451	Cgc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857152	9857152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	61	397	2	ENST00000330684.3:c.4249C>T	p.Arg1417Trp	p.R1417W	ENST00000330684	NM_001134407.1	1417	Cgg/Tgg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916463	39916463	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	88	389	1	ENST00000378444.4:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000378444	NM_001123385.1	1514	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	46	267	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	46	267	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271747	15271747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	13	628	2	ENST00000263388.2:c.6692del	p.Pro2231GlnfsTer15	p.P2231Qfs*15	ENST00000263388	NM_000435.2	2231	cCa/ca																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808929	3808929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	86	665	1	ENST00000262367.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000262367	NM_004380.2	1099	Gaa/Aaa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	29	509	1	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509208	106509208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	78	585	0	ENST00000359195.3:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000359195	NM_002649.2	401	cCc/cTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68972936	68972936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	79	507	0	ENST00000288368.4:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000288368	NM_024870.2	421	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720727	89720727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	14	171	0	ENST00000371953.3:c.878G>T	p.Gly293Val	p.G293V	ENST00000371953	NM_000314.4	293	gGa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	58	630	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995569	68995569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	103	642	0	ENST00000288368.4:c.1973C>T	p.Ser658Leu	p.S658L	ENST00000288368	NM_024870.2	658	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444960	49444960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	60	438	1	ENST00000301067.7:c.2506del	p.Gln836SerfsTer94	p.Q836Sfs*94	ENST00000301067	NM_003482.3	836	Cag/ag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637211	176637211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	90	575	2	ENST00000439151.2:c.1811G>A	p.Arg604Gln	p.R604Q	ENST00000439151	NM_022455.4	604	cGa/cAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435227	18435227	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	61	329	0	ENST00000266497.5:c.212G>A	p.Trp71Ter	p.W71*	ENST00000266497		71	tGg/tAg																																																																														
MET	4233	MSKCC	GRCh37	7	116413630	116413630	+	intron_variant	Intron	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	93	836	0	ENST00000397752.3:c.3029-1305C>T		p.*1010*	ENST00000397752	NM_000245.2																																																																																
PLCG2	5336	MSKCC	GRCh37	16	81969978	81969978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	53	335	0	ENST00000359376.3:c.3047C>T	p.Thr1016Met	p.T1016M	ENST00000359376	NM_002661.3	1016	aCg/aTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261326	16261326	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	59	550	0	ENST00000375759.3:c.8591C>G	p.Ser2864Trp	p.S2864W	ENST00000375759	NM_015001.2	2864	tCg/tGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105769	27105769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	83	385	0	ENST00000324856.7:c.5380G>A	p.Asp1794Asn	p.D1794N	ENST00000324856	NM_006015.4	1794	Gac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106094	27106094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	75	487	0	ENST00000324856.7:c.5705C>T	p.Pro1902Leu	p.P1902L	ENST00000324856	NM_006015.4	1902	cCt/cTt																																																																														
STK40	83931	MSKCC	GRCh37	1	36826917	36826917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	65	605	2	ENST00000373129.3:c.17C>T	p.Ser6Leu	p.S6L	ENST00000373129	NM_032017.1	6	tCa/tTa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45795098	45795099	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	70	388	0	ENST00000372115.3:c.1487_1488delinsAA	p.Arg496Lys	p.R496K	ENST00000372115	NM_001048171.1	496	aGG/aAA																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115260810	115260810	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	94	550	1	ENST00000438362.2:c.2515C>T	p.Gln839Ter	p.Q839*	ENST00000438362	NM_001242891.1	839	Caa/Taa																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206665025	206665025	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	15	539	0	ENST00000367120.3:c.1778A>C	p.Gln593Pro	p.Q593P	ENST00000367120	NM_014002.3	593	cAg/cCg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123298115	123298115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	79	482	0	ENST00000358487.5:c.739G>A	p.Asp247Asn	p.D247N	ENST00000358487	NM_000141.4	247	Gat/Aat																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945396	71945396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	71	822	0	ENST00000298229.2:c.2284C>A	p.Arg762Ser	p.R762S	ENST00000298229	NM_001567.3	762	Cgc/Agc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94923032	94923032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	128	695	0	ENST00000536441.1:c.436G>A	p.Glu146Lys	p.E146K	ENST00000536441	NM_144665.3	146	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108170564	108170564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	88	545	0	ENST00000278616.4:c.5129G>A	p.Trp1710Ter	p.W1710*	ENST00000278616	NM_000051.3	1710	tGg/tAg																																																																														
CBL	867	MSKCC	GRCh37	11	119103364	119103365	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	50	517	2	ENST00000264033.4:c.402_403delinsAC	p.Glu135Gln	p.E135Q	ENST00000264033	NM_005188.3	134	aaGGag/aaACag																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497554	125497554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	19	345	0	ENST00000428830.2:c.118G>A	p.Val40Ile	p.V40I	ENST00000428830	NM_001114121.2	40	Gta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49439868	49439868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	90	575	1	ENST00000301067.7:c.4673C>T	p.Pro1558Leu	p.P1558L	ENST00000301067	NM_003482.3	1558	cCc/cTc																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096209	2096209	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148104494		P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	87	747	0	ENST00000219066.1:c.298C>T	p.Arg100Cys	p.R100C	ENST00000219066	NM_002528.5	100	Cgt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858243	9858243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	59	406	0	ENST00000330684.3:c.3158C>T	p.Pro1053Leu	p.P1053L	ENST00000330684	NM_001134407.1	1053	cCa/cTa																																																																														
CDH1	999	MSKCC	GRCh37	16	68835741	68835741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	124	652	0	ENST00000261769.5:c.332C>T	p.Ser111Phe	p.S111F	ENST00000261769	NM_004360.3	111	tCc/tTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346178	89346178	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	25	160	0	ENST00000301030.4:c.6772del	p.Ala2258LeufsTer79	p.A2258Lfs*79	ENST00000301030	NM_001256183.1	2258	Gct/ct																																																																														
CDK12	51755	MSKCC	GRCh37	17	37672036	37672036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	174	565	0	ENST00000447079.4:c.2821G>A	p.Glu941Lys	p.E941K	ENST00000447079	NM_015083.1	941	Gaa/Aaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435948	56435948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	62	364	2	ENST00000407977.2:c.1189C>T	p.Arg397Trp	p.R397W	ENST00000407977		397	Cgg/Tgg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18280022	18280022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	26	301	0	ENST00000222254.8:c.2105T>C	p.Val702Ala	p.V702A	ENST00000222254	NM_005027.3	702	gTg/gCg																																																																														
AXL	558	MSKCC	GRCh37	19	41743850	41743850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	83	559	1	ENST00000301178.4:c.785C>A	p.Ala262Asp	p.A262D	ENST00000301178	NM_021913.4	262	gCt/gAt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982462	25982463	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	99	405	2	ENST00000435504.4:c.827_828delinsTT	p.Ser276Phe	p.S276F	ENST00000435504		276	tCC/tTT																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25991688	25991689	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	70	507	0	ENST00000435504.4:c.553dup	p.Ser185LysfsTer20	p.S185Kfs*20	ENST00000435504		185	agc/aAgc																																																																														
ALK	238	MSKCC	GRCh37	2	29917736	29917736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150966028		P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	68	680	2	ENST00000389048.3:c.932G>A	p.Arg311His	p.R311H	ENST00000389048	NM_004304.4	311	cGt/cAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026320	48026320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	61	414	0	ENST00000234420.5:c.1198G>A	p.Glu400Lys	p.E400K	ENST00000234420	NM_000179.2	400	Gag/Aag																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866477	42866477	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	96	781	0	ENST00000398585.3:c.155A>G	p.Tyr52Cys	p.Y52C	ENST00000398585	NM_001135099.1	52	tAt/tGt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37061817	37061817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	70	529	0	ENST00000231790.2:c.901C>T	p.Gln301Ter	p.Q301*	ENST00000231790	NM_000249.3	301	Cag/Tag																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461521	138461521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	101	556	0	ENST00000289153.2:c.500C>T	p.Ser167Phe	p.S167F	ENST00000289153	NM_006219.2	167	tCt/tTt																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013720	170013720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	75	636	2	ENST00000295797.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000295797	NM_002740.5	480	cGc/cAc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185165730	185165730	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	61	350	0	ENST00000265026.3:c.1005T>A	p.Asp335Glu	p.D335E	ENST00000265026	NM_004721.4	335	gaT/gaA																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324690	31324691	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	29	161	0	ENST00000412585.2:c.117dup	p.Gly40ArgfsTer59	p.G40Rfs*59	ENST00000412585	NM_005514.6	39	-/C																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172078	32172079	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	81	685	4	ENST00000375023.3:c.2953_2954delinsTT	p.Pro985Phe	p.P985F	ENST00000375023	NM_004557.3	985	CCc/TTc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821490	32821490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	57	479	0	ENST00000354258.4:c.104G>A	p.Gly35Asp	p.G35D	ENST00000354258	NM_000593.5	35	gGt/gAt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289651	33289651	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	53	486	0	ENST00000374542.5:c.52G>T	p.Ala18Ser	p.A18S	ENST00000374542	NM_001141970.1	18	Gca/Tca																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138201268	138201268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	108	505	0	ENST00000237289.4:c.1967C>T	p.Pro656Leu	p.P656L	ENST00000237289	NM_001270507.1	656	cCg/cTg																																																																														
PARK2	5071	MSKCC	GRCh37	6	162622219	162622219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	114	488	0	ENST00000366898.1:c.478G>A	p.Gly160Arg	p.G160R	ENST00000366898	NM_004562.2	160	Gga/Aga																																																																														
HGF	3082	MSKCC	GRCh37	7	81339554	81339554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	89	464	0	ENST00000222390.5:c.1450G>A	p.Val484Ile	p.V484I	ENST00000222390	NM_000601.4	484	Gta/Ata																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106519994	106519994	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	51	329	0	ENST00000359195.3:c.2427del	p.Lys809AsnfsTer68	p.K809Nfs*68	ENST00000359195	NM_002649.2	808	Aaa/aa																																																																														
SMO	6608	MSKCC	GRCh37	7	128849225	128849225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	82	532	0	ENST00000249373.3:c.1453C>T	p.Arg485Trp	p.R485W	ENST00000249373	NM_005631.4	485	Cgg/Tgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950413	68950413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	88	553	0	ENST00000288368.4:c.725C>T	p.Thr242Ile	p.T242I	ENST00000288368	NM_024870.2	242	aCc/aTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486071	8486071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	73	454	0	ENST00000356435.5:c.2746G>A	p.Glu916Lys	p.E916K	ENST00000356435		916	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528675	8528675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	91	392	0	ENST00000356435.5:c.457C>T	p.Pro153Ser	p.P153S	ENST00000356435		153	Ccg/Tcg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401756	139401757	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0024731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	40	649	1	ENST00000277541.6:c.3643_3643+1delinsAA		p.X1215_splice	ENST00000277541	NM_017617.3	1215																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	62	215	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	107	116	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	303	227	0	ENST00000304494.5:c.243dup	p.Val82ArgfsTer38	p.V82Rfs*38	ENST00000304494	NM_000077.4	81	-/C																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	303	227	0	ENST00000304494.5:c.243dup	p.Val82ArgfsTer38	p.V82Rfs*38	ENST00000304494	NM_000077.4	81	-/C																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	303	227	0	ENST00000304494.5:c.243dup	p.Val82ArgfsTer38	p.V82Rfs*38	ENST00000304494	NM_000077.4	81	-/C																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870799	12870799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	19	61	0	ENST00000228872.4:c.26G>A	p.Gly9Glu	p.G9E	ENST00000228872	NM_004064.3	9	gGg/gAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992151	72992152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	60	199	0	ENST00000268489.5:c.1893dup	p.Gly632TrpfsTer35	p.G632Wfs*35	ENST00000268489	NM_006885.3	631	-/T																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323151	31323151	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	169	130	1	ENST00000412585.2:c.838A>T	p.Arg280Ter	p.R280*	ENST00000412585	NM_005514.6	280	Aga/Tga																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249692	110249692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	176	215	0	ENST00000374672.4:c.983G>A	p.Arg328Lys	p.R328K	ENST00000374672	NM_004235.4	328	aGg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0025018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1277	64	653	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	59	478	1	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	59	478	1	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
RHOA	387	MSKCC	GRCh37	3	49412905	49412905	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	48	789	0	ENST00000418115.1:c.118G>C	p.Glu40Gln	p.E40Q	ENST00000418115	NM_001664.2	40	Gag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0025018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	40	565	4				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	59	478	1	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
RET	5979	MSKCC	GRCh37	10	43614979	43614979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	54	565	1	ENST00000355710.3:c.2393G>A	p.Gly798Asp	p.G798D	ENST00000355710	NM_020975.4	798	gGc/gAc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1325430	1325430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	144	512	0	ENST00000381566.1:c.245C>T	p.Ser82Leu	p.S82L	ENST00000381566		82	tCg/tTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522401	157522401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	189	667	0	ENST00000346085.5:c.4673C>T	p.Ser1558Phe	p.S1558F	ENST00000346085	NM_020732.3	1558	tCc/tTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55561767	55561767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	50	449	0	ENST00000288135.5:c.157G>A	p.Glu53Lys	p.E53K	ENST00000288135	NM_000222.2	53	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499732	8499732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	144	586	0	ENST00000356435.5:c.2237G>A	p.Gly746Glu	p.G746E	ENST00000356435		746	gGa/gAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739066	40739066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	132	506	0	ENST00000373198.4:c.3218G>A	p.Gly1073Asp	p.G1073D	ENST00000373198	NM_133170.3	1073	gGc/gAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857127	9857127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	198	391	1	ENST00000330684.3:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000330684	NM_001134407.1	1425	tCg/tTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346082	89346082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	32	78	0	ENST00000301030.4:c.6868C>T	p.Pro2290Ser	p.P2290S	ENST00000301030	NM_001256183.1	2290	Ccc/Tcc																																																																														
ALK	238	MSKCC	GRCh37	2	29451888	29451888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	173	665	0	ENST00000389048.3:c.2677G>A	p.Gly893Arg	p.G893R	ENST00000389048	NM_004304.4	893	Gga/Aga																																																																														
ALK	238	MSKCC	GRCh37	2	29543748	29543748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	51	375	0	ENST00000389048.3:c.1415G>A	p.Arg472Gln	p.R472Q	ENST00000389048	NM_004304.4	472	cGg/cAg																																																																														
ATR	545	MSKCC	GRCh37	3	142222283	142222283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	128	444	0	ENST00000350721.4:c.5209C>T	p.His1737Tyr	p.H1737Y	ENST00000350721	NM_001184.3	1737	Cat/Tat																																																																														
EP300	2033	MSKCC	GRCh37	22	41568590	41568590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	227	627	0	ENST00000263253.7:c.4540G>A	p.Glu1514Lys	p.E1514K	ENST00000263253	NM_001429.3	1514	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1254614	1254614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201330213		P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	128	380	0	ENST00000310581.5:c.3164C>T	p.Ser1055Leu	p.S1055L	ENST00000310581	NM_198253.2	1055	tCg/tTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600324	10600324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	142	541	2	ENST00000171111.5:c.1531G>A	p.Gly511Ser	p.G511S	ENST00000171111	NM_203500.1	511	Ggc/Agc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30133269	30133269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	122	613	0	ENST00000263025.4:c.229G>A	p.Glu77Lys	p.E77K	ENST00000263025	NM_002746.2	77	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653814	89653815	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	241	480	1	ENST00000371953.3:c.112_113delinsTT	p.Pro38Phe	p.P38F	ENST00000371953	NM_000314.4	38	CCt/TTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1264595	1264595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	88	516	0	ENST00000310581.5:c.2767C>T	p.Pro923Ser	p.P923S	ENST00000310581	NM_198253.2	923	Ccg/Tcg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46267787	46267787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	184	656	1	ENST00000371998.3:c.2548C>T	p.Pro850Ser	p.P850S	ENST00000371998		850	Cct/Tct																																																																														
CIC	23152	MSKCC	GRCh37	19	42794481	42794481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	244	848	0	ENST00000575354.2:c.1561C>T	p.Pro521Ser	p.P521S	ENST00000575354	NM_015125.3	521	Cct/Tct																																																																														
ESR1	2099	MSKCC	GRCh37	6	152415558	152415558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	145	633	0	ENST00000206249.3:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000206249	NM_000125.3	470	Gaa/Aaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356248	66356248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202046693		P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	80	631	0	ENST00000273854.3:c.1249C>T	p.Arg417Trp	p.R417W	ENST00000273854	NM_004439.5	417	Cgg/Tgg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221981	1221981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	168	634	0	ENST00000326873.7:c.896C>T	p.Ser299Phe	p.S299F	ENST00000326873	NM_000455.4	299	tCc/tTc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137830	64137830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	454	840	0	ENST00000334205.4:c.1931C>T	p.Ser644Phe	p.S644F	ENST00000334205	NM_003942.2	644	tCc/tTc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687321	37687321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	159	551	1	ENST00000447079.4:c.4225C>T	p.Pro1409Ser	p.P1409S	ENST00000447079	NM_015083.1	1409	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	216	438	2				ENST00000310581	NM_198253.2																																																																																
NUP93	9688	MSKCC	GRCh37	16	56868112	56868112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	170	595	0	ENST00000308159.5:c.1610G>A	p.Arg537Gln	p.R537Q	ENST00000308159	NM_014669.4	537	cGg/cAg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158594124	158594125	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	114	501	0	ENST00000263640.3:c.1448_1449delinsTT	p.Ser483Phe	p.S483F	ENST00000263640	NM_001105.4	483	tCC/tTT																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70982038	70982039	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	75	610	0	ENST00000276594.2:c.57_58delinsAA	p.Glu20Lys	p.E20K	ENST00000276594	NM_024504.3	19	ccGGag/ccAAag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841532	156841532	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	462	723	2	ENST00000524377.1:c.835C>T	p.Gln279Ter	p.Q279*	ENST00000524377	NM_002529.3	279	Cag/Tag																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646419	23646419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	301	533	1	ENST00000261584.4:c.1448C>T	p.Ser483Leu	p.S483L	ENST00000261584	NM_024675.3	483	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421012	49421012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	129	417	0	ENST00000301067.7:c.14737G>A	p.Glu4913Lys	p.E4913K	ENST00000301067	NM_003482.3	4913	Gaa/Aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	48937094	48937094	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	31	215	1	ENST00000267163.4:c.861+1G>A		p.X287_splice	ENST00000267163	NM_000321.2	287																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94068039	94068039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	112	462	0	ENST00000369303.4:c.923C>G	p.Ser308Cys	p.S308C	ENST00000369303	NM_004440.3	308	tCc/tGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306556	41306556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	132	576	1	ENST00000373198.4:c.1103G>A	p.Gly368Glu	p.G368E	ENST00000373198	NM_133170.3	368	gGg/gAg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141549464	141549464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	246	427	0	ENST00000220592.5:c.2124G>C	p.Gln708His	p.Q708H	ENST00000220592	NM_012154.3	708	caG/caC																																																																														
ALK	238	MSKCC	GRCh37	2	29474026	29474026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147858673		P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	86	680	1	ENST00000389048.3:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000389048	NM_004304.4	717	Gag/Aag																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612807	228612807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	128	574	0	ENST00000366696.1:c.220G>A	p.Glu74Lys	p.E74K	ENST00000366696	NM_003493.2	74	Gag/Aag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965694	93965694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	125	527	0	ENST00000369303.4:c.2234G>A	p.Gly745Glu	p.G745E	ENST00000369303	NM_004440.3	745	gGa/gAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120881	115120881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	88	415	0	ENST00000257566.3:c.125C>T	p.Pro42Leu	p.P42L	ENST00000257566	NM_016569.3	42	cCc/cTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467767	66467767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	68	447	0	ENST00000273854.3:c.502G>A	p.Glu168Lys	p.E168K	ENST00000273854	NM_004439.5	168	Gaa/Aaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599871	10599871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	202	598	0	ENST00000171111.5:c.1705C>T	p.Leu569Phe	p.L569F	ENST00000171111	NM_203500.1	569	Ctt/Ttt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426978	49426978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	119	443	0	ENST00000301067.7:c.11510C>T	p.Ser3837Phe	p.S3837F	ENST00000301067	NM_003482.3	3837	tCc/tTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546694	9546694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	176	371	0	ENST00000353224.5:c.1328G>A	p.Gly443Glu	p.G443E	ENST00000353224	NM_177990.2	443	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967912	93967912	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	167	557	0	ENST00000369303.4:c.2015C>G	p.Thr672Arg	p.T672R	ENST00000369303	NM_004440.3	672	aCa/aGa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562918	95562918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	64	480	0	ENST00000343455.3:c.4339C>G	p.Gln1447Glu	p.Q1447E	ENST00000343455	NM_177438.2	1447	Cag/Gag																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782158	9782159	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	263	500	1	ENST00000377346.4:c.2181_2182delinsTT	p.Leu728Phe	p.L728F	ENST00000377346	NM_005026.3	727	gcCCtc/gcTTtc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259448	16259448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	253	499	0	ENST00000375759.3:c.6713C>T	p.Pro2238Leu	p.P2238L	ENST00000375759	NM_015001.2	2238	cCt/cTt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937985	36937985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	85	609	2	ENST00000361632.4:c.851C>T	p.Pro284Leu	p.P284L	ENST00000361632		284	cCc/cTc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363194	40363195	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	241	599	0	ENST00000397332.2:c.1034_1035delinsTT	p.Ser345Phe	p.S345F	ENST00000397332	NM_001033082.2	345	tCC/tTT																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330511	65330511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	293	552	0	ENST00000342505.4:c.1135G>A	p.Glu379Lys	p.E379K	ENST00000342505	NM_002227.2	379	Gag/Aag																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165600	118165600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	99	413	0	ENST00000369448.3:c.110G>A	p.Gly37Glu	p.G37E	ENST00000369448	NM_017709.3	37	gGa/gAa																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166112	118166112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	118	413	0	ENST00000369448.3:c.622C>T	p.Pro208Ser	p.P208S	ENST00000369448	NM_017709.3	208	Ccc/Tcc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458221	120458222	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	66	604	3	ENST00000256646.2:c.7123_7124delinsTT	p.Pro2375Phe	p.P2375F	ENST00000256646	NM_024408.3	2375	CCt/TTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466369	120466369	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	232	554	1	ENST00000256646.2:c.4750C>T	p.Gln1584Ter	p.Q1584*	ENST00000256646	NM_024408.3	1584	Cag/Tag																																																																														
HIST2H3D	653604	MSKCC	GRCh37	1	149784861	149784861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	77	224	0	ENST00000331491.1:c.376C>T	p.Gln126Ter	p.Q126*	ENST00000331491	NM_001123375.2	126	Cag/Tag																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551667	150551668	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	246	399	1	ENST00000369026.2:c.339_340delinsTT	p.Pro114Ser	p.P114S	ENST00000369026	NM_021960.4	113	gcCCcg/gcTTcg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843718	156843719	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	437	746	0	ENST00000524377.1:c.1144_1145delinsTT	p.Pro382Phe	p.P382F	ENST00000524377	NM_002529.3	382	CCt/TTt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746130	162746131	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	87	357	1	ENST00000367921.3:c.2253_2254delinsTT	p.Arg752Cys	p.R752C	ENST00000367921	NM_006182.2	751	atCCgc/atTTgc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176175951	176175951	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	23	147	0	ENST00000367669.3:c.164C>G	p.Ala55Gly	p.A55G	ENST00000367669	NM_022457.5	55	gCc/gGc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984418	201984418	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	75	606	0	ENST00000359651.3:c.1083G>A	p.Trp361Ter	p.W361*	ENST00000359651		361	tgG/tgA																																																																														
PARP1	142	MSKCC	GRCh37	1	226551747	226551747	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	149	458	0	ENST00000366794.5:c.2683A>C	p.Ile895Leu	p.I895L	ENST00000366794	NM_001618.3	895	Atc/Ctc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246027169	246027169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	78	614	0	ENST00000388985.4:c.833G>A	p.Gly278Asp	p.G278D	ENST00000388985		278	gGt/gAt																																																																														
TET1	80312	MSKCC	GRCh37	10	70446252	70446252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	157	521	0	ENST00000373644.4:c.5192C>T	p.Ser1731Phe	p.S1731F	ENST00000373644	NM_030625.2	1731	tCt/tTt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903687	114903687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	137	594	0	ENST00000543371.1:c.691C>T	p.Pro231Ser	p.P231S	ENST00000543371	NM_001198531.1	231	Cca/Tca																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123263415	123263415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	193	459	0	ENST00000358487.5:c.1328C>T	p.Pro443Leu	p.P443L	ENST00000358487	NM_000141.4	443	cCg/cTg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201753	102201753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	158	467	0	ENST00000263464.3:c.1105G>A	p.Asp369Asn	p.D369N	ENST00000263464	NM_001165.4	369	Gac/Aac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344593	118344593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	162	538	0	ENST00000534358.1:c.2719C>T	p.Pro907Ser	p.P907S	ENST00000534358	NM_005933.3	907	Cct/Tct																																																																														
CBL	867	MSKCC	GRCh37	11	119167698	119167699	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	223	601	1	ENST00000264033.4:c.2107_2108delinsTT	p.Pro703Phe	p.P703F	ENST00000264033	NM_005188.3	703	CCc/TTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	420145	420146	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	74	482	1	ENST00000399788.2:c.3121_3122delinsTT	p.Pro1041Leu	p.P1041L	ENST00000399788	NM_001042603.1	1041	CCg/TTg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037493	12037493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	142	357	0	ENST00000396373.4:c.1124G>T	p.Gly375Val	p.G375V	ENST00000396373	NM_001987.4	375	gGa/gTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244268	46244268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	69	462	0	ENST00000334344.6:c.2362C>T	p.Pro788Ser	p.P788S	ENST00000334344	NM_152641.2	788	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424191	49424191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	79	292	1	ENST00000301067.7:c.13871C>T	p.Ser4624Leu	p.S4624L	ENST00000301067	NM_003482.3	4624	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436360	49436360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	141	587	0	ENST00000301067.7:c.5851C>T	p.Pro1951Ser	p.P1951S	ENST00000301067	NM_003482.3	1951	Ccg/Tcg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444331	49444331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	139	621	1	ENST00000301067.7:c.3040C>T	p.Pro1014Ser	p.P1014S	ENST00000301067	NM_003482.3	1014	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445836	49445836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	128	977	1	ENST00000301067.7:c.1630C>T	p.Pro544Ser	p.P544S	ENST00000301067	NM_003482.3	544	Ccc/Tcc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478850	56478851	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	77	695	2	ENST00000267101.3:c.306_307delinsTT	p.Arg103Cys	p.R103C	ENST00000267101	NM_001982.3	102	ctCCgc/ctTTgc																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811666	102811666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	223	764	1	ENST00000307046.8:c.518G>A	p.Gly173Glu	p.G173E	ENST00000307046	NM_001111285.1	173	gGa/gAa																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856193	111856193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	58	340	1	ENST00000341259.2:c.244G>A	p.Gly82Arg	p.G82R	ENST00000341259	NM_005475.2	82	Gga/Aga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112257	115112257	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	75	249	1	ENST00000257566.3:c.1483C>T	p.Gln495Ter	p.Q495*	ENST00000257566	NM_016569.3	495	Cag/Tag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112281	115112281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	65	202	0	ENST00000257566.3:c.1459G>A	p.Asp487Asn	p.D487N	ENST00000257566	NM_016569.3	487	Gac/Aac																																																																														
CDK8	1024	MSKCC	GRCh37	13	26974671	26974671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	73	565	0	ENST00000381527.3:c.1015C>T	p.Pro339Ser	p.P339S	ENST00000381527	NM_001260.1	339	Cca/Tca																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601378	28601378	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	46	446	1	ENST00000241453.7:c.2054G>A	p.Gly685Glu	p.G685E	ENST00000241453	NM_004119.2	685	gGa/gAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950926	32950926	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	51	545	0	ENST00000380152.3:c.8752G>C	p.Glu2918Gln	p.E2918Q	ENST00000380152		2918	Gag/Cag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954222	32954222	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	239	647	1	ENST00000380152.3:c.9196C>T	p.Gln3066Ter	p.Q3066*	ENST00000380152		3066	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	49033944	49033944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	327	448	0	ENST00000267163.4:c.2081T>C	p.Leu694Pro	p.L694P	ENST00000267163	NM_000321.2	694	cTc/cCc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519191	103519191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	173	437	0	ENST00000355739.4:c.2529A>T	p.Gln843His	p.Q843H	ENST00000355739	NM_000123.3	843	caA/caT																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434796	110434796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	219	631	0	ENST00000375856.3:c.3605C>A	p.Thr1202Asn	p.T1202N	ENST00000375856	NM_003749.2	1202	aCc/aAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436052	110436052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	364	737	0	ENST00000375856.3:c.2349C>G	p.Phe783Leu	p.F783L	ENST00000375856	NM_003749.2	783	ttC/ttG																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436929	110436929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	63	423	0	ENST00000375856.3:c.1472C>T	p.Ser491Phe	p.S491F	ENST00000375856	NM_003749.2	491	tCc/tTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438388	110438388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	57	89	1	ENST00000375856.3:c.13C>T	p.Pro5Ser	p.P5S	ENST00000375856	NM_003749.2	5	Ccg/Tcg																																																																														
MAX	4149	MSKCC	GRCh37	14	65560431	65560431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	204	362	0	ENST00000358664.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000358664	NM_002382.4	56	Gag/Tag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95556844	95556845	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	102	388	1	ENST00000343455.3:c.5759_5760delinsTT	p.Pro1920Leu	p.P1920L	ENST00000343455	NM_177438.2	1920	cCC/cTT																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40678574	40678574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	58	596	0	ENST00000249776.8:c.316C>T	p.Arg106Trp	p.R106W	ENST00000249776	NM_033286.3	106	Cgg/Tgg																																																																														
MGA	23269	MSKCC	GRCh37	15	41961946	41961946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	63	426	0	ENST00000219905.7:c.854C>T	p.Ser285Phe	p.S285F	ENST00000219905	NM_001164273.1	285	tCc/tTc																																																																														
MGA	23269	MSKCC	GRCh37	15	41988796	41988796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	84	594	0	ENST00000219905.7:c.1588C>T	p.Leu530Phe	p.L530F	ENST00000219905	NM_001164273.1	530	Ctt/Ttt																																																																														
BLM	641	MSKCC	GRCh37	15	91292995	91292995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	73	635	2	ENST00000355112.3:c.497C>T	p.Ser166Leu	p.S166L	ENST00000355112	NM_000057.2	166	tCa/tTa																																																																														
BLM	641	MSKCC	GRCh37	15	91334006	91334006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	71	550	1	ENST00000355112.3:c.2951G>A	p.Gly984Glu	p.G984E	ENST00000355112	NM_000057.2	984	gGg/gAg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226066	2226066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	95	611	0	ENST00000326181.6:c.1763C>T	p.Ser588Phe	p.S588F	ENST00000326181	NM_032271.2	588	tCc/tTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778678	3778678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	229	563	0	ENST00000262367.5:c.6370C>T	p.Gln2124Ter	p.Q2124*	ENST00000262367	NM_004380.2	2124	Cag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786710	3786711	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	229	717	1	ENST00000262367.5:c.4500_4501delinsAA	p.Glu1501Lys	p.E1501K	ENST00000262367	NM_004380.2	1500	caGGag/caAAag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274177	10274178	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	98	442	3	ENST00000330684.3:c.91_92delinsTT	p.Pro31Phe	p.P31F	ENST00000330684	NM_001134407.1	31	CCc/TTc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041990	14041990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	199	441	1	ENST00000311895.7:c.2537C>T	p.Pro846Leu	p.P846L	ENST00000311895	NM_005236.2	846	cCt/cTt																																																																														
CBFB	865	MSKCC	GRCh37	16	67070600	67070600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	90	340	0	ENST00000412916.2:c.224G>A	p.Gly75Glu	p.G75E	ENST00000412916		75	gGa/gAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828617	72828617	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	137	688	0	ENST00000268489.5:c.7964T>A	p.Ile2655Asn	p.I2655N	ENST00000268489	NM_006885.3	2655	aTt/aAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845860	72845860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	148	594	0	ENST00000268489.5:c.3607G>A	p.Glu1203Lys	p.E1203K	ENST00000268489	NM_006885.3	1203	Gag/Aag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836288	89836289	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	155	681	1	ENST00000389301.3:c.2460_2461delinsTT	p.Leu821Phe	p.L821F	ENST00000389301	NM_000135.2	820	agCCtc/agTTtc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89849269	89849269	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	160	599	0	ENST00000389301.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000389301	NM_000135.2	542	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	324	628	2	ENST00000269305.4:c.743_744delinsAC	p.Arg248His	p.R248H	ENST00000269305	NM_001126112.2	248	cGG/cAC																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619091	37619091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	251	582	0	ENST00000447079.4:c.767C>T	p.Ser256Leu	p.S256L	ENST00000447079	NM_015083.1	256	tCg/tTg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657580	37657580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	247	665	0	ENST00000447079.4:c.2497G>A	p.Glu833Lys	p.E833K	ENST00000447079	NM_015083.1	833	Gag/Aag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687232	37687232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	161	584	1	ENST00000447079.4:c.4136C>T	p.Ser1379Phe	p.S1379F	ENST00000447079	NM_015083.1	1379	tCt/tTt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475346	40475347	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	224	603	1	ENST00000264657.5:c.1679_1680delinsTT	p.Ser560Phe	p.S560F	ENST00000264657	NM_139276.2	560	tCC/tTT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215924	41215924	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	183	581	0	ENST00000357654.3:c.5119A>T	p.Ile1707Phe	p.I1707F	ENST00000357654	NM_007294.3	1707	Att/Ttt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223097	41223097	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	85	645	0	ENST00000357654.3:c.4834C>T	p.Gln1612Ter	p.Q1612*	ENST00000357654	NM_007294.3	1612	Cag/Tag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47679314	47679314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	151	516	1	ENST00000347630.2:c.893C>T	p.Ser298Phe	p.S298F	ENST00000347630	NM_001007230.1	298	tCc/tTc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56414997	56414997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	172	541	0	ENST00000348428.3:c.2398A>G	p.Arg800Gly	p.R800G	ENST00000348428	NM_006785.3	800	Aga/Gga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208276	5208277	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	35	622	1	ENST00000357368.4:c.5613_5614delinsTT	p.Gln1872Ter	p.Q1872*	ENST00000357368	NM_002850.3	1871	ggCCag/ggTTag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291077	10291077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	171	621	1	ENST00000340748.4:c.394C>T	p.Leu132Phe	p.L132F	ENST00000340748		132	Ctt/Ttt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11169485	11169485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	162	670	0	ENST00000344626.4:c.4555T>C	p.Tyr1519His	p.Y1519H	ENST00000344626	NM_003072.3	1519	Tac/Cac																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14629065	14629066	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	95	365	1	ENST00000254322.2:c.96_97delinsTT	p.Pro33Ser	p.P33S	ENST00000254322	NM_006145.1	32	caCCcg/caTTcg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271711	15271711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	209	722	0	ENST00000263388.2:c.6728C>T	p.Pro2243Leu	p.P2243L	ENST00000263388	NM_000435.2	2243	cCt/cTt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272312	15272312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	178	616	1	ENST00000263388.2:c.6127C>T	p.Leu2043Phe	p.L2043F	ENST00000263388	NM_000435.2	2043	Ctc/Ttc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299052	15299052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	156	507	0	ENST00000263388.2:c.1486C>T	p.Pro496Ser	p.P496S	ENST00000263388	NM_000435.2	496	Ccc/Tcc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303085	15303086	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	186	765	0	ENST00000263388.2:c.364_365delinsTT	p.Pro122Phe	p.P122F	ENST00000263388	NM_000435.2	122	CCc/TTc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308431	30308431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	131	590	0	ENST00000262643.3:c.445C>G	p.Leu149Val	p.L149V	ENST00000262643	NM_001238.2	149	Ctg/Gtg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211084	36211085	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	173	737	1	ENST00000222270.7:c.835_836delinsTT	p.Pro279Phe	p.P279F	ENST00000222270	NM_014727.1	279	CCc/TTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36215967	36215968	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	164	717	3	ENST00000222270.7:c.3507_3508delinsTT	p.Arg1170Cys	p.R1170C	ENST00000222270	NM_014727.1	1169	caCCgc/caTTgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222850	36222850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	204	674	1	ENST00000222270.7:c.5479C>T	p.Leu1827Phe	p.L1827F	ENST00000222270	NM_014727.1	1827	Ctt/Ttt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905086	50905086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	159	621	1	ENST00000440232.2:c.368C>T	p.Pro123Leu	p.P123L	ENST00000440232	NM_002691.3	123	cCt/cTt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912865	50912866	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	158	628	3	ENST00000440232.2:c.2096_2097delinsAT	p.Ser699Tyr	p.S699Y	ENST00000440232	NM_002691.3	699	tCC/tAT																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	30	562	0	ENST00000322088.6:c.536C>T	p.Pro179Leu	p.P179L	ENST00000322088	NM_014225.5	179	cCc/cTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25458628	25458628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	200	572	0	ENST00000264709.3:c.2545C>T	p.Pro849Ser	p.P849S	ENST00000264709	NM_175629.2	849	Cct/Tct																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872482	136872482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	71	365	2	ENST00000241393.3:c.1016C>T	p.Ser339Phe	p.S339F	ENST00000241393	NM_003467.2	339	tCt/tTt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793350	242793350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	191	666	2	ENST00000334409.5:c.727C>T	p.Pro243Ser	p.P243S	ENST00000334409	NM_005018.2	243	Cct/Tct																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022763	31022763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	153	551	1	ENST00000375687.4:c.2248C>T	p.Pro750Ser	p.P750S	ENST00000375687	NM_015338.5	750	Ccc/Tcc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024690	31024691	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	120	542	1	ENST00000375687.4:c.4175_4176delinsTT	p.Pro1392Leu	p.P1392L	ENST00000375687	NM_015338.5	1392	cCC/cTT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40911165	40911165	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	227	523	0	ENST00000373198.4:c.2140G>A	p.Glu714Lys	p.E714K	ENST00000373198	NM_133170.3	714	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306741	41306741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	112	483	0	ENST00000373198.4:c.918G>A	p.Trp306Ter	p.W306*	ENST00000373198	NM_133170.3	306	tgG/tgA																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319102	62319102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	166	599	0	ENST00000508582.2:c.1532C>T	p.Ser511Phe	p.S511F	ENST00000508582		511	tCc/tTc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259360	36259360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	360	523	0	ENST00000300305.3:c.131C>T	p.Ser44Phe	p.S44F	ENST00000300305		44	tCc/tTc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44515850	44515850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	153	605	0	ENST00000291552.4:c.203C>T	p.Ala68Val	p.A68V	ENST00000291552	NM_006758.2	68	gCc/gTc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22160189	22160189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	118	411	0	ENST00000215832.6:c.442C>T	p.Arg148Cys	p.R148C	ENST00000215832	NM_002745.4	148	Cgt/Tgt																																																																														
EP300	2033	MSKCC	GRCh37	22	41521904	41521904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	227	781	1	ENST00000263253.7:c.766C>T	p.Pro256Ser	p.P256S	ENST00000263253	NM_001429.3	256	Cca/Tca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588862	52588862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	151	531	0	ENST00000394830.3:c.4166C>T	p.Pro1389Leu	p.P1389L	ENST00000394830	NM_018313.4	1389	cCt/cTt																																																																														
GATA2	2624	MSKCC	GRCh37	3	128199894	128199895	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	72	387	0	ENST00000341105.2:c.1410_1411delinsTT	p.His471Tyr	p.H471Y	ENST00000341105	NM_032638.4	470	ccCCac/ccTTac																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670237	134670237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	175	499	0	ENST00000398015.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000398015	NM_004441.4	50	Gaa/Aaa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185161369	185161369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	181	611	0	ENST00000265026.3:c.796G>A	p.Gly266Arg	p.G266R	ENST00000265026	NM_004721.4	266	Gga/Aga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1800999	1801000	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	177	711	2	ENST00000260795.2:c.128_129delinsTT	p.Pro43Leu	p.P43L	ENST00000260795		43	cCC/cTT																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1957846	1957846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	173	563	0	ENST00000382891.5:c.2812C>T	p.Pro938Ser	p.P938S	ENST00000382891	NM_133335.3	938	Ccg/Tcg																																																																														
KDR	3791	MSKCC	GRCh37	4	55964923	55964923	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1062832		P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	53	497	0	ENST00000263923.4:c.2314G>A	p.Ala772Thr	p.A772T	ENST00000263923	NM_002253.2	772	Gcg/Acg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361143	66361143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	108	468	0	ENST00000273854.3:c.1029C>G	p.Phe343Leu	p.F343L	ENST00000273854	NM_004439.5	343	ttC/ttG																																																																														
FAT1	2195	MSKCC	GRCh37	4	187519202	187519202	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	76	646	0	ENST00000441802.2:c.12181T>A	p.Cys4061Ser	p.C4061S	ENST00000441802	NM_005245.3	4061	Tgc/Agc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525595	187525595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	80	628	0	ENST00000441802.2:c.10484G>C	p.Gly3495Ala	p.G3495A	ENST00000441802	NM_005245.3	3495	gGa/gCa																																																																														
SDHA	6389	MSKCC	GRCh37	5	224608	224608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	224	312	0	ENST00000264932.6:c.284C>T	p.Pro95Leu	p.P95L	ENST00000264932	NM_004168.2	95	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1280392	1280392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	299	623	0	ENST00000310581.5:c.1831G>A	p.Glu611Lys	p.E611K	ENST00000310581	NM_198253.2	611	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1293719	1293719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	319	625	1	ENST00000310581.5:c.1282C>T	p.Arg428Trp	p.R428W	ENST00000310581	NM_198253.2	428	Cgg/Tgg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31521233	31521233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	272	551	0	ENST00000344624.3:c.944G>A	p.Gly315Glu	p.G315E	ENST00000344624		315	gGa/gAa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38953568	38953569	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	194	464	0	ENST00000357387.3:c.2784_2785delinsAA	p.Trp928_Ala929delinsTer	p.W928_A929delins*	ENST00000357387	NM_152756.3	928	tgGGcc/tgAAcc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671293	30671293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	141	514	0	ENST00000376406.3:c.5584G>A	p.Gly1862Ser	p.G1862S	ENST00000376406	NM_014641.2	1862	Ggc/Agc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681112	30681112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	206	368	0	ENST00000376406.3:c.607C>T	p.Pro203Ser	p.P203S	ENST00000376406	NM_014641.2	203	Ccg/Tcg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323312	31323312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	43	155	0	ENST00000412585.2:c.677G>C	p.Arg226Thr	p.R226T	ENST00000412585	NM_005514.6	226	aGg/aCg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163506	32163506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	337	491	0	ENST00000375023.3:c.5720G>A	p.Gly1907Glu	p.G1907E	ENST00000375023	NM_004557.3	1907	gGa/gAa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803463	32803464	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	172	659	1	ENST00000374899.4:c.695_696delinsTT	p.Ser232Phe	p.S232F	ENST00000374899	NM_018833.2	232	tCC/tTT																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43746208	43746208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1218	83	554	0	ENST00000523873.1:c.327C>G	p.Ile109Met	p.I109M	ENST00000523873		109	atC/atG																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066706	94066706	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	94	575	0	ENST00000369303.4:c.1053G>A	p.Trp351Ter	p.W351*	ENST00000369303	NM_004440.3	351	tgG/tgA																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554996	106554996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	258	458	0	ENST00000369096.4:c.2113C>T	p.His705Tyr	p.H705Y	ENST00000369096	NM_001198.3	705	Cac/Tac																																																																														
FYN	2534	MSKCC	GRCh37	6	112015627	112015627	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	258	403	0	ENST00000368678.4:c.1215C>G	p.Asp405Glu	p.D405E	ENST00000368678		405	gaC/gaG																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663617	117663617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	328	635	0	ENST00000368508.3:c.4615C>T	p.Pro1539Ser	p.P1539S	ENST00000368508	NM_002944.2	1539	Cct/Tct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117730772	117730773	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	280	653	3	ENST00000368508.3:c.261_262delinsAA	p.Glu88Lys	p.E88K	ENST00000368508	NM_002944.2	87	gcGGaa/gcAAaa																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137540440	137540440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	75	438	0	ENST00000367739.4:c.25C>T	p.Leu9Phe	p.L9F	ENST00000367739	NM_000416.2	9	Ctt/Ttt																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202344	138202345	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	128	515	0	ENST00000237289.4:c.2261_2262delinsTT	p.Pro754Leu	p.P754L	ENST00000237289	NM_001270507.1	754	cCC/cTT																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983308	149983308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	129	673	0	ENST00000253339.5:c.2950C>T	p.Leu984Phe	p.L984F	ENST00000253339		984	Ctt/Ttt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522512	157522512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	215	757	0	ENST00000346085.5:c.4784C>T	p.Pro1595Leu	p.P1595L	ENST00000346085	NM_020732.3	1595	cCa/cTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527443	157527443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	188	468	0	ENST00000346085.5:c.5168C>T	p.Ser1723Phe	p.S1723F	ENST00000346085	NM_020732.3	1723	tCc/tTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2998136	2998136	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	393	681	1	ENST00000396946.4:c.5C>T	p.Pro2Leu	p.P2L	ENST00000396946	NM_032415.4	2	cCa/cTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227984	55227984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	123	487	2	ENST00000275493.2:c.1451C>T	p.Ser484Phe	p.S484F	ENST00000275493	NM_005228.3	484	tCc/tTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508411	106508412	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	59	248	0	ENST00000359195.3:c.405_406delinsTT	p.His136Tyr	p.H136Y	ENST00000359195	NM_002649.2	135	atCCac/atTTac																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523577	106523577	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	89	414	0	ENST00000359195.3:c.2729G>A	p.Trp910Ter	p.W910*	ENST00000359195	NM_002649.2	910	tGg/tAg																																																																														
MET	4233	MSKCC	GRCh37	7	116413218	116413218	+	intron_variant	Intron	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	475	801	0	ENST00000397752.3:c.3028+1175C>T		p.*1010*	ENST00000397752	NM_000245.2																																																																																
EZH2	2146	MSKCC	GRCh37	7	148515115	148515115	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	120	464	0	ENST00000320356.2:c.1094A>T	p.Asn365Ile	p.N365I	ENST00000320356	NM_004456.4	365	aAt/aTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151846132	151846132	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	252	409	1	ENST00000262189.6:c.12880C>T	p.Gln4294Ter	p.Q4294*	ENST00000262189	NM_170606.2	4294	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874835	151874836	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	233	317	1	ENST00000262189.6:c.7702_7703delinsAA	p.Gly2568Lys	p.G2568K	ENST00000262189	NM_170606.2	2568	GGa/AAa																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29197692	29197692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	95	597	0	ENST00000240100.2:c.502C>T	p.Pro168Ser	p.P168S	ENST00000240100	NM_001394.6	168	Cca/Tca																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968107	68968107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	74	595	0	ENST00000288368.4:c.1136C>T	p.Ser379Phe	p.S379F	ENST00000288368	NM_024870.2	379	tCt/tTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69032477	69032478	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	66	635	1	ENST00000288368.4:c.3551_3552delinsTT	p.Ala1184Val	p.A1184V	ENST00000288368	NM_024870.2	1184	gCC/gTT																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970957	70970957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	87	747	0	ENST00000276594.2:c.1304C>T	p.Ser435Phe	p.S435F	ENST00000276594	NM_024504.3	435	tCt/tTt																																																																														
RAD21	5885	MSKCC	GRCh37	8	117866521	117866521	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	145	532	0	ENST00000297338.2:c.1124del	p.Leu375TyrfsTer12	p.L375Yfs*12	ENST00000297338	NM_006265.2	375	tTa/ta																																																																														
AGO2	27161	MSKCC	GRCh37	8	141561432	141561432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	66	445	0	ENST00000220592.5:c.1373C>T	p.Pro458Leu	p.P458L	ENST00000220592	NM_012154.3	458	cCc/cTc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740447	145740447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	268	584	0	ENST00000428558.2:c.1493C>T	p.Thr498Met	p.T498M	ENST00000428558	NM_004260.3	498	aCg/aTg																																																																														
TEK	7010	MSKCC	GRCh37	9	27202823	27202823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	253	524	0	ENST00000380036.4:c.1915C>T	p.Pro639Ser	p.P639S	ENST00000380036	NM_000459.3	639	Cct/Tct																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020745	37020745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	322	672	0	ENST00000358127.4:c.100C>T	p.Pro34Ser	p.P34S	ENST00000358127	NM_001280556.1	34	Ccg/Tcg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342676	87342677	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	143	678	2	ENST00000277120.3:c.961_962delinsAA	p.Gly321Lys	p.G321K	ENST00000277120		321	GGg/AAg																																																																														
SYK	6850	MSKCC	GRCh37	9	93607810	93607810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	281	482	1	ENST00000375746.1:c.512G>A	p.Gly171Glu	p.G171E	ENST00000375746	NM_001174167.1	171	gGa/gAa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250124	110250124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	171	560	0	ENST00000374672.4:c.551C>T	p.Pro184Leu	p.P184L	ENST00000374672	NM_004235.4	184	cCc/cTc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250217	110250218	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	141	548	3	ENST00000374672.4:c.457_458delinsTT	p.Pro153Leu	p.P153L	ENST00000374672	NM_004235.4	153	CCg/TTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797328	135797329	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	100	357	0	ENST00000298552.3:c.540_541delinsTT	p.His181Tyr	p.H181Y	ENST00000298552	NM_001162426.1	180	ctCCat/ctTTat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405231	139405231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	171	598	1	ENST00000277541.6:c.2614G>A	p.Glu872Lys	p.E872K	ENST00000277541	NM_017617.3	872	Gag/Aag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321321	1321321	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	502	571	0	ENST00000381566.1:c.434A>T	p.Asp145Val	p.D145V	ENST00000381566		145	gAt/gTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933854	39933854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	196	360	0	ENST00000378444.4:c.745C>T	p.Pro249Ser	p.P249S	ENST00000378444	NM_001123385.1	249	Cca/Tca																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732912	44732912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	226	241	0	ENST00000377967.4:c.115C>T	p.Pro39Ser	p.P39S	ENST00000377967	NM_021140.2	39	Ccc/Tcc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938493	44938493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	205	274	0	ENST00000377967.4:c.3041C>T	p.Pro1014Leu	p.P1014L	ENST00000377967	NM_021140.2	1014	cCc/cTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412685	63412685	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	33	282	0	ENST00000330258.3:c.482C>G	p.Ser161Cys	p.S161C	ENST00000330258	NM_152424.3	161	tCt/tGt																																																																														
AR	367	MSKCC	GRCh37	X	66765571	66765571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	280	370	0	ENST00000374690.3:c.583C>T	p.Gln195Ter	p.Q195*	ENST00000374690	NM_000044.3	195	Cag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70341560	70341560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	161	320	0	ENST00000374080.3:c.995C>T	p.Pro332Leu	p.P332L	ENST00000374080		332	cCt/cTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70345283	70345284	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	72	285	1	ENST00000374080.3:c.2309_2310delinsTT	p.Ala770Val	p.A770V	ENST00000374080		770	gCC/gTT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0025345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	58	475	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	128	713	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	178	518	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	178	518	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584693	187584693	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	88	588	1	ENST00000441802.2:c.3340C>T	p.Gln1114Ter	p.Q1114*	ENST00000441802	NM_005245.3	1114	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	178	518	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541642	187541642	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	54	359	0	ENST00000441802.2:c.6098C>G	p.Ser2033Ter	p.S2033*	ENST00000441802	NM_005245.3	2033	tCa/tGa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528399	157528399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	108	556	0	ENST00000346085.5:c.6124G>C	p.Glu2042Gln	p.E2042Q	ENST00000346085	NM_020732.3	2042	Gaa/Caa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	66	388	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0025544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	284	706	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	125	487	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	125	487	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	97	452	2	ENST00000359013.4:c.1658G>T	p.Arg553Leu	p.R553L	ENST00000359013	NM_001024847.2	553	cGt/cTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	125	487	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193202241	193202241	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	93	562	0	ENST00000367435.3:c.1273T>G	p.Tyr425Asp	p.Y425D	ENST00000367435	NM_024529.4	425	Tat/Gat																																																																														
TSC2	7249	MSKCC	GRCh37	16	2105406	2105406	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	124	555	0	ENST00000219476.3:c.485A>G	p.Asp162Gly	p.D162G	ENST00000219476	NM_000548.3	162	gAc/gGc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118378	17118378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	115	732	0	ENST00000285071.4:c.1459G>A	p.Glu487Lys	p.E487K	ENST00000285071	NM_144997.5	487	Gaa/Aaa																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158586	26158586	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	115	613	0	ENST00000289316.2:c.189G>C	p.Met63Ile	p.M63I	ENST00000289316	NM_138720.2	63	atG/atC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	207	512	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	357	372	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2969697	2969697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	171	697	1	ENST00000396946.4:c.1582G>A	p.Glu528Lys	p.E528K	ENST00000396946	NM_032415.4	528	Gag/Aag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	376	1041	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
RAF1	5894	MSKCC	GRCh37	3	12633229	12633229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	904	616	0	ENST00000251849.4:c.1171A>T	p.Arg391Trp	p.R391W	ENST00000251849	NM_002880.3	391	Agg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	386	563	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	386	563	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	386	563	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524185	187524185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	77	440	0	ENST00000441802.2:c.11354G>A	p.Gly3785Glu	p.G3785E	ENST00000441802	NM_005245.3	3785	gGa/gAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245399	46245399	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	222	523	0	ENST00000334344.6:c.3493C>T	p.Gln1165Ter	p.Q1165*	ENST00000334344	NM_152641.2	1165	Caa/Taa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560970	9560970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	351	452	1	ENST00000353224.5:c.812C>T	p.Ser271Leu	p.S271L	ENST00000353224	NM_177990.2	271	tCg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112174098	112174098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	243	408	0	ENST00000257430.4:c.2807A>G	p.Asn936Ser	p.N936S	ENST00000257430	NM_000038.5	936	aAt/aGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	87	463	0				ENST00000310581	NM_198253.2																																																																																
TET1	80312	MSKCC	GRCh37	10	70406184	70406184	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	208	641	0	ENST00000373644.4:c.3698A>C	p.Lys1233Thr	p.K1233T	ENST00000373644	NM_030625.2	1233	aAa/aCa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102196235	102196235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	69	399	0	ENST00000263464.3:c.892G>A	p.Gly298Arg	p.G298R	ENST00000263464	NM_001165.4	298	Gga/Aga																																																																														
CYLD	1540	MSKCC	GRCh37	16	50784036	50784036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	81	673	3	ENST00000398568.2:c.427C>T	p.Pro143Ser	p.P143S	ENST00000398568	NM_001042412.1	143	Cct/Tct																																																																														
CENPA	1058	MSKCC	GRCh37	2	27016085	27016085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	307	554	0	ENST00000335756.4:c.361C>T	p.Leu121Phe	p.L121F	ENST00000335756	NM_001809.3	121	Ctc/Ttc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100905	41100906	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	109	488	1	ENST00000373198.4:c.1450_1450+1delinsAA		p.X484_splice	ENST00000373198	NM_133170.3	484																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322440	31322440	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	135	577	0	ENST00000412585.2:c.1015G>A	p.Gly339Arg	p.G339R	ENST00000412585	NM_005514.6	339	Gga/Aga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005204	150005204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	62	460	0	ENST00000253339.5:c.1021C>T	p.Pro341Ser	p.P341S	ENST00000253339		341	Cca/Tca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962283	2962283	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	161	651	0	ENST00000396946.4:c.2254A>C	p.Lys752Gln	p.K752Q	ENST00000396946	NM_032415.4	752	Aag/Cag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874557	151874557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	220	419	1	ENST00000262189.6:c.7981C>T	p.Pro2661Ser	p.P2661S	ENST00000262189	NM_170606.2	2661	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129850	69129850	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	160	300	0	ENST00000288368.4:c.4605-1G>A		p.X1535_splice	ENST00000288368	NM_024870.2	1535																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	96	410	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	241	409	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	196	550	0	ENST00000269305.4:c.821T>A	p.Val274Asp	p.V274D	ENST00000269305	NM_001126112.2	274	gTt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1264673	1264673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	171	655	0	ENST00000310581.5:c.2689G>A	p.Val897Met	p.V897M	ENST00000310581	NM_198253.2	897	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971101	21971110	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCGTCGT	GCAGCGTCGT	-			P-0025871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	49	218	0	ENST00000304494.5:c.248_257del	p.His83ProfsTer60	p.H83Pfs*60	ENST00000304494	NM_000077.4	83	cACGACGCTGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971101	21971110	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCGTCGT	GCAGCGTCGT	-			P-0025871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	49	218	0	ENST00000304494.5:c.248_257del	p.His83ProfsTer60	p.H83Pfs*60	ENST00000304494	NM_000077.4	83	cACGACGCTGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971101	21971110	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCGTCGT	GCAGCGTCGT	-			P-0025871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	49	218	0	ENST00000304494.5:c.248_257del	p.His83ProfsTer60	p.H83Pfs*60	ENST00000304494	NM_000077.4	83	cACGACGCTGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971163	21971184	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCAGCAGCAGCTCCGCCACT	GAGCAGCAGCAGCTCCGCCACT	-			P-0025871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	23	275	0	ENST00000304494.5:c.174_195del	p.Val59ThrfsTer80	p.V59Tfs*80	ENST00000304494	NM_000077.4	58	cgAGTGGCGGAGCTGCTGCTGCTC/cg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971163	21971184	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCAGCAGCAGCTCCGCCACT	GAGCAGCAGCAGCTCCGCCACT	-			P-0025871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	23	275	0	ENST00000304494.5:c.174_195del	p.Val59ThrfsTer80	p.V59Tfs*80	ENST00000304494	NM_000077.4	58	cgAGTGGCGGAGCTGCTGCTGCTC/cg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53254023	53254023	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	128	506	0	ENST00000375401.3:c.49T>G	p.Phe17Val	p.F17V	ENST00000375401	NM_004187.3	17	Ttc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	157	548	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015133	37015133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	65	565	1	ENST00000358127.4:c.271G>A	p.Ala91Thr	p.A91T	ENST00000358127	NM_001280556.1	91	Gcc/Acc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778096	135778096	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	43	447	1	ENST00000298552.3:c.2287C>T	p.Gln763Ter	p.Q763*	ENST00000298552	NM_001162426.1	763	Cag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651292	52651292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	31	427	0	ENST00000394830.3:c.1804G>A	p.Glu602Lys	p.E602K	ENST00000394830	NM_018313.4	602	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140439656	140439656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	39	328	0	ENST00000288602.6:c.2083G>C	p.Glu695Gln	p.E695Q	ENST00000288602	NM_004333.4	695	Gag/Cag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905343	50905343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	80	550	0	ENST00000440232.2:c.551G>T	p.Gly184Val	p.G184V	ENST00000440232	NM_002691.3	184	gGg/gTg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655372	67655372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	52	533	1	ENST00000264010.4:c.1235G>T	p.Cys412Phe	p.C412F	ENST00000264010	NM_006565.3	412	tGt/tTt																																																																														
HGF	3082	MSKCC	GRCh37	7	81372783	81372783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	108	348	0	ENST00000222390.5:c.751C>A	p.Pro251Thr	p.P251T	ENST00000222390	NM_000601.4	251	Ccc/Acc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748159	72748159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	72	288	0	ENST00000357731.5:c.19G>T	p.Val7Leu	p.V7L	ENST00000357731	NM_173808.2	7	Gtg/Ttg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120509013	120509013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	129	572	0	ENST00000256646.2:c.1553G>A	p.Cys518Tyr	p.C518Y	ENST00000256646	NM_024408.3	518	tGc/tAc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746083	162746083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	118	364	0	ENST00000367921.3:c.2206T>C	p.Tyr736His	p.Y736H	ENST00000367921	NM_006182.2	736	Tac/Cac																																																																														
NUF2	83540	MSKCC	GRCh37	1	163325201	163325201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	140	589	0	ENST00000271452.3:c.1337C>G	p.Ala446Gly	p.A446G	ENST00000271452	NM_145697.2	446	gCt/gGt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850714	63850714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	33	464	0	ENST00000279873.7:c.1492G>C	p.Glu498Gln	p.E498Q	ENST00000279873	NM_032199.2	498	Gaa/Caa																																																																														
TET1	80312	MSKCC	GRCh37	10	70333992	70333992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	86	439	0	ENST00000373644.4:c.1897G>T	p.Val633Phe	p.V633F	ENST00000373644	NM_030625.2	633	Gtt/Ttt																																																																														
TET1	80312	MSKCC	GRCh37	10	70450798	70450798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	82	401	0	ENST00000373644.4:c.5638C>T	p.His1880Tyr	p.H1880Y	ENST00000373644	NM_030625.2	1880	Cac/Tac																																																																														
ATM	472	MSKCC	GRCh37	11	108098401	108098401	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	149	519	0	ENST00000278616.4:c.50A>G	p.His17Arg	p.H17R	ENST00000278616	NM_000051.3	17	cAt/cGt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435113	18435113	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	171	505	0	ENST00000266497.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000266497		33	tCt/tGt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423519	88423519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	182	616	0	ENST00000360948.2:c.2316C>A	p.Phe772Leu	p.F772L	ENST00000360948	NM_001012338.2	772	ttC/ttA																																																																														
BLM	641	MSKCC	GRCh37	15	91346930	91346930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	81	495	0	ENST00000355112.3:c.3538G>T	p.Val1180Leu	p.V1180L	ENST00000355112	NM_000057.2	1180	Gta/Tta																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858797	9858797	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	42	152	0	ENST00000330684.3:c.2604C>A	p.Tyr868Ter	p.Y868*	ENST00000330684	NM_001134407.1	868	taC/taA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274189	10274189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	101	280	0	ENST00000330684.3:c.80C>A	p.Ala27Glu	p.A27E	ENST00000330684	NM_001134407.1	27	gCg/gAg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805690	46805690	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	163	509	0	ENST00000290295.7:c.266C>G	p.Ser89Cys	p.S89C	ENST00000290295	NM_006361.5	89	tCc/tGc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440751	56440752	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	126	395	0	ENST00000407977.2:c.466_467delinsTT	p.Gly156Leu	p.G156L	ENST00000407977		156	GGg/TTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575066	48575066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	132	356	0	ENST00000342988.3:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000342988	NM_005359.5	87	cGg/cAg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217909	2217909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	165	535	0	ENST00000398665.3:c.2683G>T	p.Glu895Ter	p.E895*	ENST00000398665	NM_032482.2	895	Gag/Tag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210583	5210583	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	143	450	0	ENST00000357368.4:c.5384C>G	p.Pro1795Arg	p.P1795R	ENST00000357368	NM_002850.3	1795	cCg/cGg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905893	50905893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	84	549	0	ENST00000440232.2:c.865G>T	p.Asp289Tyr	p.D289Y	ENST00000440232	NM_002691.3	289	Gac/Tac																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624867	9624868	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	139	507	0	ENST00000353224.5:c.109dup	p.Gln37ProfsTer36	p.Q37Pfs*36	ENST00000353224	NM_177990.2	37	cag/cCag																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309483	30309483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	155	521	0	ENST00000307677.4:c.539C>T	p.Pro180Leu	p.P180L	ENST00000307677	NM_138578.1	180	cCt/cTt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268694	46268694	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	88	390	0	ENST00000371998.3:c.2983del	p.Ala995LeufsTer94	p.A995Lfs*94	ENST00000371998		993	atG/at																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161736	47161736	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	86	351	0	ENST00000409792.3:c.4390G>C	p.Ala1464Pro	p.A1464P	ENST00000409792	NM_014159.6	1464	Gcc/Ccc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52692281	52692281	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	161	538	0	ENST00000394830.3:c.579A>G	p.Ile193Met	p.I193M	ENST00000394830	NM_018313.4	193	atA/atG																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960047	134960047	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	78	530	0	ENST00000398015.3:c.2404A>G	p.Thr802Ala	p.T802A	ENST00000398015	NM_004441.4	802	Act/Gct																																																																														
BCL6	604	MSKCC	GRCh37	3	187446334	187446334	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	96	317	0	ENST00000232014.4:c.1356-2A>C		p.X452_splice	ENST00000232014	NM_001130845.1	452																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55146563	55146563	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	113	465	0	ENST00000257290.5:c.2237T>A	p.Leu746Gln	p.L746Q	ENST00000257290	NM_006206.4	746	cTa/cAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161352	55161352	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138036141		P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	140	527	0	ENST00000257290.5:c.3183G>C	p.Lys1061Asn	p.K1061N	ENST00000257290	NM_006206.4	1061	aaG/aaC																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286253	66286253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	126	413	0	ENST00000273854.3:c.1433G>T	p.Gly478Val	p.G478V	ENST00000273854	NM_004439.5	478	gGg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541678	187541678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	95	321	0	ENST00000441802.2:c.6062G>T	p.Arg2021Leu	p.R2021L	ENST00000441802	NM_005245.3	2021	cGc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295388	1295388	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	20	122	1				ENST00000310581	NM_198253.2																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31468154	31468154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	142	568	0	ENST00000344624.3:c.2258G>T	p.Arg753Leu	p.R753L	ENST00000344624		753	cGt/cTt																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225765	26225765	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	44	453	0	ENST00000360408.1:c.383C>G	p.Ala128Gly	p.A128G	ENST00000360408	NM_003532.2	128	gCc/gGc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172160	32172160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	60	482	2	ENST00000375023.3:c.2872C>T	p.Pro958Ser	p.P958S	ENST00000375023	NM_004557.3	958	Cca/Tca																																																																														
PIM1	5292	MSKCC	GRCh37	6	37141752	37141752	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	53	529	0	ENST00000373509.5:c.827C>G	p.Ser276Ter	p.S276*	ENST00000373509	NM_002648.3	276	tCa/tGa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975463	13975463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	93	347	0	ENST00000405192.2:c.424A>T	p.Ser142Cys	p.S142C	ENST00000405192	NM_001163147.1	142	Agc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266409	55266409	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	107	371	0	ENST00000275493.2:c.2702-1G>C		p.X901_splice	ENST00000275493	NM_005228.3	901																																																																															
HGF	3082	MSKCC	GRCh37	7	81381508	81381508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	99	340	0	ENST00000222390.5:c.553G>T	p.Gly185Trp	p.G185W	ENST00000222390	NM_000601.4	185	Ggg/Tgg																																																																														
HGF	3082	MSKCC	GRCh37	7	81392072	81392072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	131	470	2	ENST00000222390.5:c.205C>A	p.Gln69Lys	p.Q69K	ENST00000222390	NM_000601.4	69	Caa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864632	68864632	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	41	111	0	ENST00000288368.4:c.3G>T	p.Met1?	p.M1?	ENST00000288368	NM_024870.2	1	atG/atT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	64	307	0	ENST00000304494.5:c.202G>C	p.Ala68Pro	p.A68P	ENST00000304494	NM_000077.4	68	Gcg/Ccg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	64	307	0	ENST00000304494.5:c.202G>C	p.Ala68Pro	p.A68P	ENST00000304494	NM_000077.4	68	Gcg/Ccg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	64	307	0	ENST00000304494.5:c.202G>C	p.Ala68Pro	p.A68P	ENST00000304494	NM_000077.4	68	Gcg/Ccg																																																																														
FANCC	2176	MSKCC	GRCh37	9	97933361	97933361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	55	462	1	ENST00000289081.3:c.521G>T	p.Arg174Leu	p.R174L	ENST00000289081	NM_000136.2	174	cGa/cTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417552	139417552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	81	617	0	ENST00000277541.6:c.492C>G	p.Cys164Trp	p.C164W	ENST00000277541	NM_017617.3	164	tgC/tgG																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139820300	139820300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	37	569	0	ENST00000247668.2:c.1453G>T	p.Val485Leu	p.V485L	ENST00000247668	NM_021138.3	485	Gtg/Ttg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410409	63410409	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	114	318	0	ENST00000330258.3:c.2758G>T	p.Glu920Ter	p.E920*	ENST00000330258	NM_152424.3	920	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	120	430	0				ENST00000310581	NM_198253.2																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123310821	123310821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	147	481	0	ENST00000358487.5:c.607C>T	p.Arg203Cys	p.R203C	ENST00000358487	NM_000141.4	203	Cgc/Tgc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953136	17953136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	149	546	0	ENST00000458235.1:c.850G>A	p.Gly284Arg	p.G284R	ENST00000458235	NM_000215.3	284	Gga/Aga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	146	462	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	146	462	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171607	36171607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	66	241	0	ENST00000300305.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000300305		320	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112177701	112177701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	110	275	0	ENST00000257430.4:c.6410C>T	p.Ser2137Phe	p.S2137F	ENST00000257430	NM_000038.5	2137	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288996	212288996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	144	463	0	ENST00000342788.4:c.2750G>A	p.Gly917Glu	p.G917E	ENST00000342788	NM_005235.2	917	gGa/gAa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271975	15271975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	137	561	1	ENST00000263388.2:c.6464G>A	p.Gly2155Glu	p.G2155E	ENST00000263388	NM_000435.2	2155	gGa/gAa																																																																														
HGF	3082	MSKCC	GRCh37	7	81346583	81346583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	127	358	0	ENST00000222390.5:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000222390	NM_000601.4	457	cCa/cTa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	162	435	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273811	18273811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	169	551	0	ENST00000222254.8:c.1144C>T	p.His382Tyr	p.H382Y	ENST00000222254	NM_005027.3	382	Cac/Tac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244400	5244400	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79388082		P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	184	638	1	ENST00000357368.4:c.1082C>T	p.Ser361Phe	p.S361F	ENST00000357368	NM_002850.3	361	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243484	46243484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	133	368	0	ENST00000334344.6:c.1837C>T	p.Gln613Ter	p.Q613*	ENST00000334344	NM_152641.2	613	Cag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271543	15271543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	199	807	1	ENST00000263388.2:c.6896C>T	p.Ser2299Phe	p.S2299F	ENST00000263388	NM_000435.2	2299	tCc/tTc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873672	35873672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	122	313	0	ENST00000303115.3:c.628G>A	p.Asp210Asn	p.D210N	ENST00000303115	NM_002185.3	210	Gat/Aat																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609925	81609925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	75	204	0	ENST00000298171.2:c.1523C>T	p.Ser508Leu	p.S508L	ENST00000298171	NM_000369.2	508	tCg/tTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704520	117704520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	103	334	0	ENST00000368508.3:c.2456C>T	p.Ser819Phe	p.S819F	ENST00000368508	NM_002944.2	819	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967228	93967228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	113	330	0	ENST00000369303.4:c.2124G>A	p.Met708Ile	p.M708I	ENST00000369303	NM_004440.3	708	atG/atA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629514	187629514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	182	473	0	ENST00000441802.2:c.1468C>T	p.Pro490Ser	p.P490S	ENST00000441802	NM_005245.3	490	Cct/Tct																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495372	149495372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146614144		P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	155	556	0	ENST00000261799.4:c.3275C>T	p.Ser1092Leu	p.S1092L	ENST00000261799	NM_002609.3	1092	tCg/tTg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	360056	360056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	138	433	1	ENST00000262320.3:c.1033C>T	p.Pro345Ser	p.P345S	ENST00000262320	NM_003502.3	345	Cca/Tca																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057657	180057657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	185	612	2	ENST00000261937.6:c.298G>A	p.Glu100Lys	p.E100K	ENST00000261937	NM_182925.4	100	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	146	462	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120509023	120509023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	167	489	0	ENST00000256646.2:c.1543C>T	p.Arg515Cys	p.R515C	ENST00000256646	NM_024408.3	515	Cgt/Tgt																																																																														
ATR	545	MSKCC	GRCh37	3	142241667	142241667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	138	348	0	ENST00000350721.4:c.4169C>T	p.Ser1390Leu	p.S1390L	ENST00000350721	NM_001184.3	1390	tCa/tTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858754	9858754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	55	245	0	ENST00000330684.3:c.2647C>T	p.Pro883Ser	p.P883S	ENST00000330684	NM_001134407.1	883	Cca/Tca																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066482	94066482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	74	258	0	ENST00000369303.4:c.1277G>A	p.Arg426Gln	p.R426Q	ENST00000369303	NM_004440.3	426	cGa/cAa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355048	15355048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	189	646	0	ENST00000263377.2:c.2575C>T	p.Pro859Ser	p.P859S	ENST00000263377	NM_058243.2	859	Cct/Tct																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281227	15281227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	142	590	3	ENST00000263388.2:c.5029C>T	p.Pro1677Ser	p.P1677S	ENST00000263388	NM_000435.2	1677	Cct/Tct																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	144	517	2	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561090	9561090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	74	272	0	ENST00000353224.5:c.692C>T	p.Ser231Leu	p.S231L	ENST00000353224	NM_177990.2	231	tCa/tTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412267	139412267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	168	597	1	ENST00000277541.6:c.1378C>T	p.Pro460Ser	p.P460S	ENST00000277541	NM_017617.3	460	Ccg/Tcg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858202	9858202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	114	397	0	ENST00000330684.3:c.3199C>T	p.Arg1067Trp	p.R1067W	ENST00000330684	NM_001134407.1	1067	Cgg/Tgg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513378	106513378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	73	291	0	ENST00000359195.3:c.2282C>T	p.Ser761Phe	p.S761F	ENST00000359195	NM_002649.2	761	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858359	9858359	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	105	302	0	ENST00000330684.3:c.3042G>A	p.Trp1014Ter	p.W1014*	ENST00000330684	NM_001134407.1	1014	tgG/tgA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274121	10274121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	168	431	0	ENST00000330684.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000330684	NM_001134407.1	50	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28980009	28980009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	105	395	0	ENST00000282397.4:c.1459G>A	p.Glu487Lys	p.E487K	ENST00000282397	NM_002019.4	487	Gaa/Aaa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971178	13971178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	96	254	0	ENST00000405192.2:c.751C>T	p.Pro251Ser	p.P251S	ENST00000405192	NM_001163147.1	251	Ccc/Tcc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024170	31024170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	150	539	0	ENST00000375687.4:c.3655C>T	p.Pro1219Ser	p.P1219S	ENST00000375687	NM_015338.5	1219	Ccc/Tcc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755685	39755685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	128	475	0	ENST00000288319.7:c.1080G>A	p.Met360Ile	p.M360I	ENST00000288319	NM_182918.3	360	atG/atA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40899067	40899067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	133	442	0	ENST00000373198.4:c.2203C>A	p.Pro735Thr	p.P735T	ENST00000373198	NM_133170.3	735	Ccg/Acg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191141	2191141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	172	599	1	ENST00000398665.3:c.395C>T	p.Ser132Phe	p.S132F	ENST00000398665	NM_032482.2	132	tCc/tTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271823	15271823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	156	667	0	ENST00000263388.2:c.6616G>A	p.Glu2206Lys	p.E2206K	ENST00000263388	NM_000435.2	2206	Gag/Aag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37042498	37042498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	165	466	0	ENST00000231790.2:c.260C>T	p.Ser87Phe	p.S87F	ENST00000231790	NM_000249.3	87	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969189	93969189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	83	288	0	ENST00000369303.4:c.1807C>T	p.Pro603Ser	p.P603S	ENST00000369303	NM_004440.3	603	Cca/Tca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435253	18435253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	99	258	0	ENST00000266497.5:c.238G>A	p.Glu80Lys	p.E80K	ENST00000266497		80	Gaa/Aaa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220154	36220154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	205	596	0	ENST00000222270.7:c.4874C>T	p.Ser1625Phe	p.S1625F	ENST00000222270	NM_014727.1	1625	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923328	9923328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	132	452	1	ENST00000330684.3:c.1959G>A	p.Met653Ile	p.M653I	ENST00000330684	NM_001134407.1	653	atG/atA																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945794	17945794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	151	535	0	ENST00000458235.1:c.2066C>T	p.Pro689Leu	p.P689L	ENST00000458235	NM_000215.3	689	cCc/cTc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7989511	7989511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	124	435	0	ENST00000319144.4:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000319144	NM_001139.2	59	Cag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68981348	68981348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	109	357	1	ENST00000288368.4:c.1420G>A	p.Glu474Lys	p.E474K	ENST00000288368	NM_024870.2	474	Gag/Aag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435040	18435040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	111	337	0	ENST00000266497.5:c.25C>T	p.Pro9Ser	p.P9S	ENST00000266497		9	Cca/Tca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289869	15289869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	206	615	1	ENST00000263388.2:c.3685G>A	p.Gly1229Ser	p.G1229S	ENST00000263388	NM_000435.2	1229	Ggt/Agt																																																																														
SYK	6850	MSKCC	GRCh37	9	93624493	93624493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	94	297	0	ENST00000375746.1:c.584G>A	p.Arg195Gln	p.R195Q	ENST00000375746	NM_001174167.1	195	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748601	40748601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200545231		P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	108	366	0	ENST00000373198.4:c.2915G>A	p.Arg972Gln	p.R972Q	ENST00000373198	NM_133170.3	972	cGa/cAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222961	36222961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	171	712	3	ENST00000222270.7:c.5590C>T	p.Arg1864Ter	p.R1864*	ENST00000222270	NM_014727.1	1864	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857305	9857305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	83	371	0	ENST00000330684.3:c.4096C>T	p.Pro1366Ser	p.P1366S	ENST00000330684	NM_001134407.1	1366	Cct/Tct																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187102	11187102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	157	557	0	ENST00000361445.4:c.6316C>T	p.His2106Tyr	p.H2106Y	ENST00000361445	NM_004958.3	2106	Cat/Tat																																																																														
ID3	3399	MSKCC	GRCh37	1	23885658	23885658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	134	453	0	ENST00000374561.5:c.260C>T	p.Pro87Leu	p.P87L	ENST00000374561	NM_002167.4	87	cCa/cTa																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521597	46521597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	141	440	0	ENST00000262741.5:c.811C>T	p.His271Tyr	p.H271Y	ENST00000262741	NM_003629.3	271	Cat/Tat																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166533	118166533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	106	369	0	ENST00000369448.3:c.1043C>T	p.Pro348Leu	p.P348L	ENST00000369448	NM_017709.3	348	cCc/cTc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731107	162731107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	161	438	1	ENST00000367921.3:c.962C>T	p.Pro321Leu	p.P321L	ENST00000367921	NM_006182.2	321	cCc/cTc																																																																														
FH	2271	MSKCC	GRCh37	1	241663812	241663812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	71	195	1	ENST00000366560.3:c.1315C>T	p.Gln439Ter	p.Q439*	ENST00000366560	NM_000143.3	439	Cag/Tag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100474	8100474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	146	604	0	ENST00000346208.3:c.448C>T	p.Leu150Phe	p.L150F	ENST00000346208		150	Ctc/Ttc																																																																														
RET	5979	MSKCC	GRCh37	10	43606655	43606655	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	114	405	0	ENST00000355710.3:c.1264A>T	p.Ile422Phe	p.I422F	ENST00000355710	NM_020975.4	422	Atc/Ttc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683183	88683183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	92	256	0	ENST00000372037.3:c.1393C>T	p.Pro465Ser	p.P465S	ENST00000372037	NM_004329.2	465	Ccg/Tcg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104309747	104309747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	195	578	1	ENST00000369902.3:c.338C>T	p.Pro113Leu	p.P113L	ENST00000369902	NM_016169.3	113	cCt/cTt																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625285	69625285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	144	549	0	ENST00000334134.2:c.508C>T	p.Arg170Cys	p.R170C	ENST00000334134	NM_005247.2	170	Cgc/Tgc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94224048	94224048	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	132	464	0	ENST00000323929.3:c.104A>G	p.Asp35Gly	p.D35G	ENST00000323929	NM_005591.3	35	gAt/gGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118363797	118363797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	132	375	0	ENST00000534358.1:c.5030C>T	p.Pro1677Leu	p.P1677L	ENST00000534358	NM_005933.3	1677	cCc/cTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118382704	118382704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	157	406	1	ENST00000534358.1:c.11110C>T	p.Arg3704Ter	p.R3704*	ENST00000534358	NM_005933.3	3704	Cga/Tga																																																																														
CBL	867	MSKCC	GRCh37	11	119170447	119170447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	115	307	0	ENST00000264033.4:c.2677C>T	p.Arg893Trp	p.R893W	ENST00000264033	NM_005188.3	893	Cgg/Tgg																																																																														
CCND2	894	MSKCC	GRCh37	12	4398059	4398059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	135	473	2	ENST00000261254.3:c.623G>A	p.Gly208Glu	p.G208E	ENST00000261254	NM_001759.3	208	gGa/gAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573966	18573966	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	84	286	0	ENST00000266497.5:c.2284C>T	p.Gln762Ter	p.Q762*	ENST00000266497		762	Cag/Tag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793421	18793421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	183	440	0	ENST00000266497.5:c.4118C>T	p.Pro1373Leu	p.P1373L	ENST00000266497		1373	cCc/cTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245184	46245184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	131	395	0	ENST00000334344.6:c.3278C>T	p.Pro1093Leu	p.P1093L	ENST00000334344	NM_152641.2	1093	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433554	49433554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	216	662	0	ENST00000301067.7:c.7999C>T	p.Pro2667Ser	p.P2667S	ENST00000301067	NM_003482.3	2667	Cca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445746	49445746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	222	873	3	ENST00000301067.7:c.1720C>T	p.Pro574Ser	p.P574S	ENST00000301067	NM_003482.3	574	Cca/Tca																																																																														
GLI1	2735	MSKCC	GRCh37	12	57857574	57857574	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	90	292	0	ENST00000228682.2:c.100G>A	p.Gly34Arg	p.G34R	ENST00000228682	NM_005269.2	34	Gga/Aga																																																																														
POLE	5426	MSKCC	GRCh37	12	133256148	133256149	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	87	472	1	ENST00000320574.5:c.512_513delinsTT	p.Ser171Phe	p.S171F	ENST00000320574	NM_006231.2	171	tCC/tTT																																																																														
FLT1	2321	MSKCC	GRCh37	13	28896963	28896963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	168	410	0	ENST00000282397.4:c.2917G>A	p.Glu973Lys	p.E973K	ENST00000282397	NM_002019.4	973	Gaa/Aaa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504557	103504557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	123	312	0	ENST00000355739.4:c.178C>T	p.His60Tyr	p.H60Y	ENST00000355739	NM_000123.3	60	Cat/Tat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88428947	88428947	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	100	333	1	ENST00000360948.2:c.2153A>T	p.Asn718Ile	p.N718I	ENST00000360948	NM_001012338.2	718	aAt/aTt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679837	88679837	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	101	341	0	ENST00000360948.2:c.626T>C	p.Leu209Pro	p.L209P	ENST00000360948	NM_001012338.2	209	cTt/cCt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222315	2222315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	137	499	1	ENST00000326181.6:c.599C>T	p.Pro200Leu	p.P200L	ENST00000326181	NM_032271.2	200	cCc/cTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789595	3789595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	130	371	1	ENST00000262367.5:c.4264C>T	p.Pro1422Ser	p.P1422S	ENST00000262367	NM_004380.2	1422	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858709	9858709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	81	341	1	ENST00000330684.3:c.2692C>T	p.Leu898Phe	p.L898F	ENST00000330684	NM_001134407.1	898	Ctc/Ttc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984954	9984954	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	147	438	0	ENST00000330684.3:c.1011T>A	p.Phe337Leu	p.F337L	ENST00000330684	NM_001134407.1	337	ttT/ttA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032006	10032006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	171	523	0	ENST00000330684.3:c.817C>T	p.Pro273Ser	p.P273S	ENST00000330684	NM_001134407.1	273	Cca/Tca																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032293	10032293	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	125	414	1	ENST00000330684.3:c.530T>G	p.Phe177Cys	p.F177C	ENST00000330684	NM_001134407.1	177	tTc/tGc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641511	23641511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	142	540	0	ENST00000261584.4:c.1964T>G	p.Phe655Cys	p.F655C	ENST00000261584	NM_024675.3	655	tTt/tGt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56871593	56871593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	144	417	0	ENST00000308159.5:c.1973C>T	p.Ser658Phe	p.S658F	ENST00000308159	NM_014669.4	658	tCc/tTc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12044560	12044560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	145	443	0	ENST00000353533.5:c.1183C>T	p.Pro395Ser	p.P395S	ENST00000353533	NM_003010.3	395	Ccc/Tcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29528079	29528079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	53	161	1	ENST00000358273.4:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000358273	NM_001042492.2	363	Cca/Tca																																																																														
NF1	4763	MSKCC	GRCh37	17	29528166	29528166	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	158	494	0	ENST00000358273.4:c.1174C>T	p.Gln392Ter	p.Q392*	ENST00000358273	NM_001042492.2	392	Caa/Taa																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362264	40362264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	131	443	2	ENST00000293328.3:c.1831C>T	p.Pro611Ser	p.P611S	ENST00000293328	NM_012448.3	611	Cca/Tca																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40459505	40459505	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	126	468	0	ENST00000345506.4:c.1766G>A	p.Trp589Ter	p.W589*	ENST00000345506	NM_003152.3	589	tGg/tAg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244595	41244595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	180	519	1	ENST00000357654.3:c.2953C>T	p.Pro985Ser	p.P985S	ENST00000357654	NM_007294.3	985	Ccc/Tcc																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56801401	56801401	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	166	423	0	ENST00000337432.4:c.905G>A	p.Gly302Glu	p.G302E	ENST00000337432	NM_058216.2	302	gGg/gAg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120493	70120493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	207	698	1	ENST00000245479.2:c.1495G>A	p.Glu499Lys	p.E499K	ENST00000245479	NM_000346.3	499	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7172397	7172397	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	113	460	0	ENST00000302850.5:c.1172T>A	p.Ile391Asn	p.I391N	ENST00000302850	NM_000208.2	391	aTt/aAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105610	11105610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	178	642	2	ENST00000344626.4:c.1526C>T	p.Ala509Val	p.A509V	ENST00000344626	NM_003072.3	509	gCc/gTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132633	11132633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	159	573	0	ENST00000344626.4:c.2849C>T	p.Thr950Ile	p.T950I	ENST00000344626	NM_003072.3	950	aCc/aTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299836	15299836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	142	599	0	ENST00000263388.2:c.1342G>A	p.Asp448Asn	p.D448N	ENST00000263388	NM_000435.2	448	Gac/Aac																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353735	15353736	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	147	670	1	ENST00000263377.2:c.3144_3145delinsTT	p.His1049Tyr	p.H1049Y	ENST00000263377	NM_058243.2	1048	caCCac/caTTac																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354229	15354229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	197	667	0	ENST00000263377.2:c.2651C>T	p.Pro884Leu	p.P884L	ENST00000263377	NM_058243.2	884	cCc/cTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210703	36210703	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200918556		P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	136	544	0	ENST00000222270.7:c.454C>T	p.Arg152Trp	p.R152W	ENST00000222270	NM_014727.1	152	Cgg/Tgg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794482	42794482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	169	644	0	ENST00000575354.2:c.1562C>T	p.Pro521Leu	p.P521L	ENST00000575354	NM_015125.3	521	cCt/cTt																																																																														
CIC	23152	MSKCC	GRCh37	19	42796328	42796329	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	181	696	0	ENST00000575354.2:c.2977_2978delinsTT	p.Pro993Phe	p.P993F	ENST00000575354	NM_015125.3	993	CCt/TTt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39262373	39262373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	182	591	0	ENST00000402219.2:c.1054C>T	p.His352Tyr	p.H352Y	ENST00000402219	NM_005633.3	352	Cat/Tat																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47606921	47606921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	119	291	0	ENST00000263735.4:c.671C>T	p.Ser224Phe	p.S224F	ENST00000263735	NM_002354.2	224	tCc/tTc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872836	136872836	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	106	306	0	ENST00000241393.3:c.662T>A	p.Ile221Asn	p.I221N	ENST00000241393	NM_003467.2	221	aTt/aAt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728659	190728659	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	155	480	4	ENST00000441310.2:c.2047C>T	p.Gln683Ter	p.Q683*	ENST00000441310	NM_000534.4	683	Cag/Tag																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735497	204735497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	127	377	0	ENST00000302823.3:c.298G>A	p.Asp100Asn	p.D100N	ENST00000302823	NM_005214.4	100	Gat/Aat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248614	212248614	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	128	399	1	ENST00000342788.4:c.3653A>T	p.Lys1218Ile	p.K1218I	ENST00000342788	NM_005235.2	1218	aAa/aTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212568867	212568868	+	missense_variant	Missense_Mutation	DNP	AA	AA	TG			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	150	526	1	ENST00000342788.4:c.1250_1251delinsCA	p.Phe417Ser	p.F417S	ENST00000342788	NM_005235.2	417	tTT/tCA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561349	9561349	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	115	323	0	ENST00000353224.5:c.433A>T	p.Lys145Ter	p.K145*	ENST00000353224	NM_177990.2	145	Aag/Tag																																																																														
SRC	6714	MSKCC	GRCh37	20	36026144	36026144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	165	562	0	ENST00000358208.4:c.746C>T	p.Pro249Leu	p.P249L	ENST00000358208		249	cCc/cTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757459	40757460	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	154	596	2	ENST00000373198.4:c.2838_2839delinsTT	p.Arg947Trp	p.R947W	ENST00000373198	NM_133170.3	946	tcCCgg/tcTTgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827984	40827984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	82	369	0	ENST00000373198.4:c.2444G>A	p.Arg815Lys	p.R815K	ENST00000373198	NM_133170.3	815	aGg/aAg																																																																														
ERG	2078	MSKCC	GRCh37	21	39795373	39795373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	134	515	0	ENST00000288319.7:c.347C>T	p.Pro116Leu	p.P116L	ENST00000288319	NM_182918.3	116	cCa/cTa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866495	42866495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	230	686	1	ENST00000398585.3:c.137C>T	p.Pro46Leu	p.P46L	ENST00000398585	NM_001135099.1	46	cCa/cTa																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45657086	45657086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	75	240	0	ENST00000407780.3:c.70G>A	p.Glu24Lys	p.E24K	ENST00000407780	NM_001283052.1	24	Gaa/Aaa																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180202	38180202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	120	324	0	ENST00000396334.3:c.50G>A	p.Gly17Glu	p.G17E	ENST00000396334	NM_002468.4	17	gGa/gAa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49939898	49939898	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	142	688	0	ENST00000296474.3:c.1145T>G	p.Val382Gly	p.V382G	ENST00000296474	NM_002447.2	382	gTg/gGg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259137	89259137	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	96	305	1	ENST00000336596.2:c.281A>T	p.Lys94Met	p.K94M	ENST00000336596	NM_005233.5	94	aAg/aTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448615	89448615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	168	455	0	ENST00000336596.2:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000336596	NM_005233.5	527	Gaa/Aaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189586382	189586382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	100	267	0	ENST00000264731.3:c.1006G>A	p.Gly336Ser	p.G336S	ENST00000264731	NM_003722.4	336	Ggc/Agc																																																																														
TP63	8626	MSKCC	GRCh37	3	189587144	189587144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	128	393	0	ENST00000264731.3:c.1161G>A	p.Met387Ile	p.M387I	ENST00000264731	NM_003722.4	387	atG/atA																																																																														
TP63	8626	MSKCC	GRCh37	3	189607131	189607131	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	163	454	0	ENST00000264731.3:c.1510C>T	p.Pro504Ser	p.P504S	ENST00000264731	NM_003722.4	504	Ccc/Tcc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612106	189612106	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	133	478	0	ENST00000264731.3:c.1858C>G	p.Pro620Ala	p.P620A	ENST00000264731	NM_003722.4	620	Cca/Gca																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806648	1806648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	157	590	0	ENST00000260795.2:c.1364C>T	p.Ser455Phe	p.S455F	ENST00000260795		455	tCc/tTc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750452	41750452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	155	424	0	ENST00000226382.2:c.176C>T	p.Ser59Phe	p.S59F	ENST00000226382	NM_003924.3	59	tCc/tTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356421	66356421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	130	296	1	ENST00000273854.3:c.1076C>T	p.Ser359Phe	p.S359F	ENST00000273854	NM_004439.5	359	tCt/tTt																																																																														
TET2	54790	MSKCC	GRCh37	4	106157506	106157506	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	121	294	0	ENST00000380013.4:c.2407C>T	p.Gln803Ter	p.Q803*	ENST00000380013	NM_001127208.2	803	Caa/Taa																																																																														
TET2	54790	MSKCC	GRCh37	4	106190815	106190815	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	128	417	0	ENST00000380013.4:c.4093G>C	p.Gly1365Arg	p.G1365R	ENST00000380013	NM_001127208.2	1365	Ggc/Cgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1282739	1282739	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	114	378	0	ENST00000310581.5:c.1574G>A	p.Gly525Glu	p.G525E	ENST00000310581	NM_198253.2	525	gGg/gAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950465	38950465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	115	340	0	ENST00000357387.3:c.3485C>T	p.Ser1162Leu	p.S1162L	ENST00000357387	NM_152756.3	1162	tCa/tTa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449857	149449857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	169	558	0	ENST00000286301.3:c.1207G>A	p.Glu403Lys	p.E403K	ENST00000286301	NM_005211.3	403	Gag/Aag																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459896	149459896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	34	543	0	ENST00000286301.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000286301	NM_005211.3	104	cCt/cTt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460492	149460492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	43	551	0	ENST00000286301.3:c.145G>A	p.Glu49Lys	p.E49K	ENST00000286301	NM_005211.3	49	Gaa/Aaa																																																																														
NPM1	4869	MSKCC	GRCh37	5	170818753	170818753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	136	280	1	ENST00000296930.5:c.302G>A	p.Arg101Lys	p.R101K	ENST00000296930	NM_002520.6	101	aGg/aAg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520534	176520534	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	140	600	0	ENST00000292408.4:c.1379G>A	p.Trp460Ter	p.W460*	ENST00000292408	NM_213647.1	460	tGg/tAg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030382	180030382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	177	591	0	ENST00000261937.6:c.3902G>A	p.Gly1301Glu	p.G1301E	ENST00000261937	NM_182925.4	1301	gGa/gAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180049814	180049814	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	182	589	0	ENST00000261937.6:c.1574A>G	p.Asn525Ser	p.N525S	ENST00000261937	NM_182925.4	525	aAt/aGt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056334	180056334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	192	602	1	ENST00000261937.6:c.910G>A	p.Asp304Asn	p.D304N	ENST00000261937	NM_182925.4	304	Gac/Aac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187453	32187453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	170	524	0	ENST00000375023.3:c.1426C>T	p.His476Tyr	p.H476Y	ENST00000375023	NM_004557.3	476	Cac/Tac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187527	32187527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	153	566	1	ENST00000375023.3:c.1352C>T	p.Ser451Phe	p.S451F	ENST00000375023	NM_004557.3	451	tCc/tTc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289095	33289095	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	153	564	0	ENST00000374542.5:c.457A>T	p.Asn153Tyr	p.N153Y	ENST00000374542	NM_001141970.1	153	Aat/Tat																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120489	94120489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	109	319	0	ENST00000369303.4:c.562G>A	p.Asp188Asn	p.D188N	ENST00000369303	NM_004440.3	188	Gat/Aat																																																																														
PRDM1	639	MSKCC	GRCh37	6	106543511	106543511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	106	321	0	ENST00000369096.4:c.313G>A	p.Glu105Lys	p.E105K	ENST00000369096	NM_001198.3	105	Gaa/Aaa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109322511	109322511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	167	511	0	ENST00000436639.2:c.526C>T	p.Arg176Cys	p.R176C	ENST00000436639	NM_014454.2	176	Cgt/Tgt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687313	117687313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	108	299	0	ENST00000368508.3:c.2738C>T	p.Thr913Ile	p.T913I	ENST00000368508	NM_002944.2	913	aCc/aTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985552	2985552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	147	468	0	ENST00000396946.4:c.259G>A	p.Gly87Ser	p.G87S	ENST00000396946	NM_032415.4	87	Ggc/Agc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729363	41729363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	140	428	1	ENST00000242208.4:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000242208	NM_002192.2	389	tCg/tTg																																																																														
MET	4233	MSKCC	GRCh37	7	116435824	116435824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	172	524	0	ENST00000397752.3:c.3914C>T	p.Pro1305Leu	p.P1305L	ENST00000397752	NM_000245.2	1305	cCc/cTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879333	151879333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	105	353	0	ENST00000262189.6:c.5612C>T	p.Ala1871Val	p.A1871V	ENST00000262189	NM_170606.2	1871	gCt/gTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945102	151945102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	45	342	1	ENST00000262189.6:c.2417C>T	p.Ser806Phe	p.S806F	ENST00000262189	NM_170606.2	806	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864738	68864738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	148	513	0	ENST00000288368.4:c.109G>A	p.Asp37Asn	p.D37N	ENST00000288368	NM_024870.2	37	Gac/Aac																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931898	68931898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	170	475	0	ENST00000288368.4:c.328C>T	p.Leu110Phe	p.L110F	ENST00000288368	NM_024870.2	110	Ctt/Ttt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968143	68968143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	185	582	0	ENST00000288368.4:c.1172G>A	p.Arg391Lys	p.R391K	ENST00000288368	NM_024870.2	391	aGa/aAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995520	68995520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	170	512	1	ENST00000288368.4:c.1924G>A	p.Asp642Asn	p.D642N	ENST00000288368	NM_024870.2	642	Gac/Aac																																																																														
PREX2	80243	MSKCC	GRCh37	8	69000009	69000009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	170	511	0	ENST00000288368.4:c.2078G>A	p.Gly693Glu	p.G693E	ENST00000288368	NM_024870.2	693	gGa/gAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030850	69030850	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150128151		P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	81	327	0	ENST00000288368.4:c.3392C>T	p.Ser1131Leu	p.S1131L	ENST00000288368	NM_024870.2	1131	tCg/tTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340386	8340386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	119	459	0	ENST00000356435.5:c.5210C>T	p.Ser1737Phe	p.S1737F	ENST00000356435		1737	tCc/tTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449773	8449773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	137	478	0	ENST00000356435.5:c.3940C>T	p.His1314Tyr	p.H1314Y	ENST00000356435		1314	Cac/Tac																																																																														
TEK	7010	MSKCC	GRCh37	9	27183606	27183606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	110	390	0	ENST00000380036.4:c.1180C>T	p.His394Tyr	p.H394Y	ENST00000380036	NM_000459.3	394	Cat/Tat																																																																														
TEK	7010	MSKCC	GRCh37	9	27206694	27206694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	145	503	0	ENST00000380036.4:c.2479C>T	p.Gln827Ter	p.Q827*	ENST00000380036	NM_000459.3	827	Caa/Taa																																																																														
SYK	6850	MSKCC	GRCh37	9	93624598	93624599	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	111	443	0	ENST00000375746.1:c.692dup	p.Lys233GlufsTer15	p.K233Efs*15	ENST00000375746	NM_001174167.1	230	gag/gaGg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317433	1317433	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0025945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	139	523	0				ENST00000381566																																																																																	
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	159	480	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	240	471	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	240	471	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	304	738	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709505	176709505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	156	363	1	ENST00000439151.2:c.5932G>A	p.Glu1978Lys	p.E1978K	ENST00000439151	NM_022455.4	1978	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	240	471	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056190	27056193	+	frameshift_variant	Frame_Shift_Del	DEL	GGCG	GGCG	-			P-0025959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	213	531	0	ENST00000324856.7:c.1188_1191del	p.Gly397LeufsTer35	p.G397Lfs*35	ENST00000324856	NM_006015.4	396	GGCGgg/gg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981851	201981852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	284	672	0	ENST00000359651.3:c.567dupC	p.Ser190LeufsTer6	p.S190Lfs*6	ENST00000359651		188	gcc/gCcc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264139	46264139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	143	330	0	ENST00000371998.3:c.1186A>G	p.Ser396Gly	p.S396G	ENST00000371998		396	Agt/Ggt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356290	66356290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	251	455	0	ENST00000273854.3:c.1207G>T	p.Gly403Cys	p.G403C	ENST00000273854	NM_004439.5	403	Ggt/Tgt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942835	44942835	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	255	589	0	ENST00000377967.4:c.3416del	p.Pro1139GlnfsTer19	p.P1139Qfs*19	ENST00000377967	NM_021140.2	1139	Cca/ca																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039294	47039294	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	322	739	0	ENST00000329236.7:c.686A>T	p.Asn229Ile	p.N229I	ENST00000329236	NM_001204466.1	229	aAc/aTc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	214	549	1	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	220	482	0				ENST00000310581	NM_198253.2																																																																																
RAD50	10111	MSKCC	GRCh37	5	131911514	131911514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143802516		P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	212	507	0	ENST00000265335.6:c.259C>T	p.Arg87Cys	p.R87C	ENST00000265335		87	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	238	636	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9547022	9547022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	98	237	0	ENST00000353224.5:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000353224	NM_177990.2	334	Gat/Aat																																																																														
TP63	8626	MSKCC	GRCh37	3	189604319	189604319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	199	471	0	ENST00000264731.3:c.1486C>T	p.Pro496Ser	p.P496S	ENST00000264731	NM_003722.4	496	Cct/Tct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	219	520	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	219	520	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TP63	8626	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	183	487	2	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	148	412	0	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491360	18491360	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	127	363	0	ENST00000266497.5:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000266497		425	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455150	50455150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	136	341	0	ENST00000331340.3:c.697C>T	p.Pro233Ser	p.P233S	ENST00000331340	NM_006060.4	233	Ccg/Tcg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28602354	28602354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	232	576	0	ENST00000241453.7:c.2014G>A	p.Glu672Lys	p.E672K	ENST00000241453	NM_004119.2	672	Gag/Aag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525059	9525059	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	264	646	0	ENST00000353224.5:c.1826G>A	p.Trp609Ter	p.W609*	ENST00000353224	NM_177990.2	609	tGg/tAg																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695728	117695728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	235	495	0	ENST00000369458.3:c.709G>A	p.Asp237Asn	p.D237N	ENST00000369458	NM_024626.3	237	Gat/Aat																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872696	136872696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	196	442	0	ENST00000241393.3:c.802G>A	p.Glu268Lys	p.E268K	ENST00000241393	NM_003467.2	268	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112179155	112179155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	163	384	0	ENST00000257430.4:c.7864C>T	p.Pro2622Ser	p.P2622S	ENST00000257430	NM_000038.5	2622	Ccc/Tcc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047002	128047002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	95	696	1	ENST00000285398.2:c.733C>T	p.Pro245Ser	p.P245S	ENST00000285398	NM_000122.1	245	Ccc/Tcc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008078	29008078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	157	347	0	ENST00000282397.4:c.691G>A	p.Asp231Asn	p.D231N	ENST00000282397	NM_002019.4	231	Gat/Aat																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444401	50444401	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	197	363	0	ENST00000331340.3:c.331C>T	p.Arg111Ter	p.R111*	ENST00000331340	NM_006060.4	111	Cga/Tga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164832	47164832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	168	382	0	ENST00000409792.3:c.1294C>T	p.Arg432Cys	p.R432C	ENST00000409792	NM_014159.6	432	Cgt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498375	89498375	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	108	229	0	ENST00000336596.2:c.2347G>A	p.Gly783Arg	p.G783R	ENST00000336596	NM_005233.5	783	Gga/Aga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101134	41101134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	241	607	0	ENST00000373198.4:c.1222G>A	p.Glu408Lys	p.E408K	ENST00000373198	NM_133170.3	408	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453185	140453185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	114	388	0	ENST00000288602.6:c.1750C>T	p.Leu584Phe	p.L584F	ENST00000288602	NM_004333.4	584	Ctt/Ttt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266967	18266967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	38	323	0	ENST00000222254.8:c.278C>T	p.Pro93Leu	p.P93L	ENST00000222254	NM_005027.3	93	cCc/cTc																																																																														
TET1	80312	MSKCC	GRCh37	10	70405122	70405122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	300	666	0	ENST00000373644.4:c.2636C>T	p.Ser879Leu	p.S879L	ENST00000373644	NM_030625.2	879	tCg/tTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641487	18641487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	206	554	0	ENST00000266497.5:c.2486C>T	p.Ser829Phe	p.S829F	ENST00000266497		829	tCc/tTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114159	115114159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	100	727	0	ENST00000257566.3:c.1058C>T	p.Ser353Phe	p.S353F	ENST00000257566	NM_016569.3	353	tCt/tTt																																																																														
BIRC3	330	MSKCC	GRCh37	11	102196012	102196012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	174	318	1	ENST00000263464.3:c.772C>T	p.Arg258Cys	p.R258C	ENST00000263464	NM_001165.4	258	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	219	520	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560894	9560894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	66	484	0	ENST00000353224.5:c.888G>A	p.Met296Ile	p.M296I	ENST00000353224	NM_177990.2	296	atG/atA																																																																														
APC	324	MSKCC	GRCh37	5	112175372	112175372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	103	257	0	ENST00000257430.4:c.4081C>T	p.Pro1361Ser	p.P1361S	ENST00000257430	NM_000038.5	1361	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	233	514	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523329	9523329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	48	489	0	ENST00000353224.5:c.1908G>A	p.Met636Ile	p.M636I	ENST00000353224	NM_177990.2	636	atG/atA																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792618	33792618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	51	71	0	ENST00000498907.2:c.703C>T	p.Pro235Ser	p.P235S	ENST00000498907	NM_004364.3	235	Ccg/Tcg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097020	11097021	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	302	820	2	ENST00000344626.4:c.511_512delCCinsTT	p.Pro171Leu	p.P171L	ENST00000344626	NM_003072.3	171	CCa/TTa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085641	16085641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	270	654	1	ENST00000281043.3:c.817G>A	p.Glu273Lys	p.E273K	ENST00000281043	NM_005378.4	273	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832265	72832265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	199	473	0	ENST00000268489.5:c.4316G>A	p.Arg1439Gln	p.R1439Q	ENST00000268489	NM_006885.3	1439	cGa/cAa																																																																														
HGF	3082	MSKCC	GRCh37	7	81381567	81381567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	116	279	0	ENST00000222390.5:c.494C>T	p.Ser165Leu	p.S165L	ENST00000222390	NM_000601.4	165	tCg/tTg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265314	152265314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	100	359	0	ENST00000206249.3:c.767G>A	p.Arg256Gln	p.R256Q	ENST00000206249	NM_000125.3	256	cGa/cAa																																																																														
AR	367	MSKCC	GRCh37	X	66766408	66766408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	50	48	0	ENST00000374690.3:c.1420G>A	p.Glu474Lys	p.E474K	ENST00000374690	NM_000044.3	474	Gag/Aag																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045832	143045832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	242	601	1	ENST00000262992.4:c.1802C>T	p.Ser601Phe	p.S601F	ENST00000262992	NM_001101669.1	601	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29559101	29559101	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	96	184	0	ENST00000358273.4:c.3208C>T	p.Gln1070Ter	p.Q1070*	ENST00000358273	NM_001042492.2	1070	Cag/Tag																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	304	802	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561325	9561325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	164	446	1	ENST00000353224.5:c.457G>A	p.Gly153Arg	p.G153R	ENST00000353224	NM_177990.2	153	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	156	371	0				ENST00000310581	NM_198253.2																																																																																
NCOA3	8202	MSKCC	GRCh37	20	46276009	46276009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	299	667	0	ENST00000371998.3:c.3445C>T	p.Pro1149Ser	p.P1149S	ENST00000371998		1149	Cct/Tct																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308081	30308081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	234	623	1	ENST00000262643.3:c.218C>T	p.Ser73Phe	p.S73F	ENST00000262643	NM_001238.2	73	tCc/tTc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760616	133760616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	371	980	0	ENST00000318560.5:c.2939C>T	p.Pro980Leu	p.P980L	ENST00000318560	NM_005157.4	980	cCc/cTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81392143	81392143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	139	395	1	ENST00000222390.5:c.134C>T	p.Ser45Leu	p.S45L	ENST00000222390	NM_000601.4	45	tCa/tTa																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46532729	46532729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	196	447	0	ENST00000262741.5:c.349C>T	p.His117Tyr	p.H117Y	ENST00000262741	NM_003629.3	117	Cac/Tac																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644487	18644487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	200	533	0	ENST00000266497.5:c.2665C>T	p.His889Tyr	p.H889Y	ENST00000266497		889	Cac/Tac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53243926	53243926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	322	427	0	ENST00000375401.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000375401	NM_004187.3	356	cCt/cTt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40476791	40476791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	334	758	0	ENST00000264657.5:c.1538C>T	p.Ser513Phe	p.S513F	ENST00000264657	NM_139276.2	513	tCc/tTc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42852443	42852443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139092674		P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	219	618	0	ENST00000398585.3:c.643G>A	p.Glu215Lys	p.E215K	ENST00000398585	NM_001135099.1	215	Gag/Aag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561016	9561016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	166	374	0	ENST00000353224.5:c.766G>A	p.Glu256Lys	p.E256K	ENST00000353224	NM_177990.2	256	Gaa/Aaa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47700144	47700144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	218	497	2	ENST00000347630.2:c.29C>T	p.Pro10Leu	p.P10L	ENST00000347630	NM_001007230.1	10	cCg/cTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106157568	106157568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	176	452	1	ENST00000380013.4:c.2469G>A	p.Met823Ile	p.M823I	ENST00000380013	NM_001127208.2	823	atG/atA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211624	36211624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	210	429	0	ENST00000222270.7:c.1375C>T	p.Pro459Ser	p.P459S	ENST00000222270	NM_014727.1	459	Cct/Tct																																																																														
RET	5979	MSKCC	GRCh37	10	43607598	43607598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	316	823	2	ENST00000355710.3:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000355710	NM_020975.4	525	cGg/cAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189584539	189584539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	234	586	1	ENST00000264731.3:c.835C>T	p.Pro279Ser	p.P279S	ENST00000264731	NM_003722.4	279	Ccc/Tcc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426731	47426731	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	291	294	0	ENST00000377045.4:c.976C>T	p.Arg326Ter	p.R326*	ENST00000377045	NM_001654.4	326	Cga/Tga																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981516	70981516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	336	1008	0	ENST00000276594.2:c.580C>T	p.Arg194Trp	p.R194W	ENST00000276594	NM_024504.3	194	Cgg/Tgg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12393114	12393114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	259	643	0	ENST00000287820.6:c.23C>T	p.Ser8Phe	p.S8F	ENST00000287820	NM_015869.4	8	tCt/tTt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074235	8074235	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	232	478	0	ENST00000377482.5:c.424T>A	p.Cys142Ser	p.C142S	ENST00000377482	NM_018948.3	142	Tgt/Agt																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366800	40366800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	248	569	0	ENST00000397332.2:c.397G>A	p.Glu133Lys	p.E133K	ENST00000397332	NM_001033082.2	133	Gaa/Aaa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120484356	120484356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	182	442	0	ENST00000256646.2:c.2774C>T	p.Ser925Phe	p.S925F	ENST00000256646	NM_024408.3	925	tCc/tTc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838434	156838434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	319	697	0	ENST00000524377.1:c.712G>A	p.Val238Met	p.V238M	ENST00000524377	NM_002529.3	238	Gtg/Atg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156848960	156848960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	302	682	0	ENST00000524377.1:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000524377	NM_002529.3	618	Gct/Act																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849107	156849107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	358	896	0	ENST00000524377.1:c.1999G>A	p.Gly667Ser	p.G667S	ENST00000524377	NM_002529.3	667	Ggt/Agt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163309203	163309203	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	241	559	0	ENST00000271452.3:c.542A>G	p.Lys181Arg	p.K181R	ENST00000271452	NM_145697.2	181	aAg/aGg																																																																														
TET1	80312	MSKCC	GRCh37	10	70333887	70333887	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	371	413	0	ENST00000373644.4:c.1792C>T	p.Gln598Ter	p.Q598*	ENST00000373644	NM_030625.2	598	Cag/Tag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258081	123258081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	235	647	0	ENST00000358487.5:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000358487	NM_000141.4	534	Gag/Aag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123260438	123260438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	215	549	0	ENST00000358487.5:c.1463G>A	p.Gly488Glu	p.G488E	ENST00000358487	NM_000141.4	488	gGa/gAa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138127	64138127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	249	670	1	ENST00000334205.4:c.2050C>T	p.Pro684Ser	p.P684S	ENST00000334205	NM_003942.2	684	Ccg/Tcg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138867	64138867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	270	644	2	ENST00000334205.4:c.2234C>T	p.Ser745Phe	p.S745F	ENST00000334205	NM_003942.2	745	tCc/tTc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572238	64572239	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	194	472	0	ENST00000337652.1:c.1415_1416delinsTT	p.Ala472Val	p.A472V	ENST00000337652	NM_130803.2	472	gCC/gTT																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948499	71948499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1293	337	823	1	ENST00000298229.2:c.3211C>T	p.Pro1071Ser	p.P1071S	ENST00000298229	NM_001567.3	1071	Cct/Tct																																																																														
PGR	5241	MSKCC	GRCh37	11	100998331	100998331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	25	50	0	ENST00000325455.5:c.1471C>T	p.Pro491Ser	p.P491S	ENST00000325455	NM_001202474.3	491	Ccg/Tcg																																																																														
SDHD	6392	MSKCC	GRCh37	11	111959725	111959725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	288	674	1	ENST00000375549.3:c.304C>T	p.His102Tyr	p.H102Y	ENST00000375549	NM_003002.3	102	Cat/Tat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342785	118342785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	159	377	0	ENST00000534358.1:c.911G>A	p.Gly304Glu	p.G304E	ENST00000534358	NM_005933.3	304	gGa/gAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343175	118343175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	183	421	0	ENST00000534358.1:c.1301A>G	p.Tyr434Cys	p.Y434C	ENST00000534358	NM_005933.3	434	tAt/tGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360579	118360579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	257	621	1	ENST00000534358.1:c.4552C>T	p.Pro1518Ser	p.P1518S	ENST00000534358	NM_005933.3	1518	Ccc/Tcc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18699287	18699287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	170	463	1	ENST00000266497.5:c.3388G>A	p.Gly1130Arg	p.G1130R	ENST00000266497		1130	Gga/Aga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425044	49425044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	272	781	1	ENST00000301067.7:c.13444G>A	p.Gly4482Arg	p.G4482R	ENST00000301067	NM_003482.3	4482	Ggg/Agg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427477	49427477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	286	736	0	ENST00000301067.7:c.11011C>T	p.Pro3671Ser	p.P3671S	ENST00000301067	NM_003482.3	3671	Ccc/Tcc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859685	57859685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	159	421	1	ENST00000228682.2:c.739G>A	p.Asp247Asn	p.D247N	ENST00000228682	NM_005269.2	247	Gac/Aac																																																																														
MDM2	4193	MSKCC	GRCh37	12	69222614	69222614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	243	681	1	ENST00000462284.1:c.587C>T	p.Ser196Phe	p.S196F	ENST00000462284	NM_002392.5	196	tCc/tTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109947	115109947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	273	763	0	ENST00000257566.3:c.1931C>T	p.Ser644Phe	p.S644F	ENST00000257566	NM_016569.3	644	tCc/tTc																																																																														
SETD8	387893	MSKCC	GRCh37	12	123879807	123879807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	226	556	0	ENST00000330479.4:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000330479	NM_020382.3	168	cGa/cAa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578239	28578239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	220	602	0	ENST00000241453.7:c.2932G>A	p.Glu978Lys	p.E978K	ENST00000241453	NM_004119.2	978	Gag/Aag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28883032	28883032	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	87	645	0	ENST00000282397.4:c.3668A>G	p.Glu1223Gly	p.E1223G	ENST00000282397	NM_002019.4	1223	gAa/gGa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28919670	28919670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	182	562	0	ENST00000282397.4:c.2267A>G	p.Asn756Ser	p.N756S	ENST00000282397	NM_002019.4	756	aAt/aGt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28931711	28931711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	183	462	0	ENST00000282397.4:c.2228C>T	p.Ser743Leu	p.S743L	ENST00000282397	NM_002019.4	743	tCa/tTa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435133	110435133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	296	725	0	ENST00000375856.3:c.3268C>A	p.Pro1090Thr	p.P1090T	ENST00000375856	NM_003749.2	1090	Ccc/Acc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422074	81422074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	203	486	0	ENST00000298171.2:c.50G>A	p.Arg17Lys	p.R17K	ENST00000298171	NM_000369.2	17	aGg/aAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678469	88678469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	250	595	1	ENST00000360948.2:c.1067G>A	p.Gly356Glu	p.G356E	ENST00000360948	NM_001012338.2	356	gGa/gAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777915	3777915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	420	914	2	ENST00000262367.5:c.7133C>T	p.Pro2378Leu	p.P2378L	ENST00000262367	NM_004380.2	2378	cCc/cTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820920	3820920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	287	658	0	ENST00000262367.5:c.2531C>T	p.Pro844Leu	p.P844L	ENST00000262367	NM_004380.2	844	cCt/cTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984946	9984946	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	233	625	0	ENST00000330684.3:c.1019A>T	p.Asn340Ile	p.N340I	ENST00000330684	NM_001134407.1	340	aAt/aTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819634	81819634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	222	592	0	ENST00000359376.3:c.40G>A	p.Glu14Lys	p.E14K	ENST00000359376	NM_002661.3	14	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965255	81965255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	183	484	0	ENST00000359376.3:c.2735C>T	p.Thr912Ile	p.T912I	ENST00000359376	NM_002661.3	912	aCc/aTc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7982820	7982820	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	349	782	0	ENST00000319144.4:c.965A>T	p.Glu322Val	p.E322V	ENST00000319144	NM_001139.2	322	gAg/gTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961373	15961373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	190	497	2	ENST00000268712.3:c.6016C>T	p.Pro2006Ser	p.P2006S	ENST00000268712	NM_006311.3	2006	Cct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29528427	29528427	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	139	415	0	ENST00000358273.4:c.1186-2A>G		p.X396_splice	ENST00000358273	NM_001042492.2	396																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78882689	78882689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	337	724	1	ENST00000306801.3:c.2480C>T	p.Ser827Leu	p.S827L	ENST00000306801	NM_020761.2	827	tCg/tTg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374892	45374893	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	270	686	2	ENST00000262160.6:c.950_951delinsTT	p.Ser317Phe	p.S317F	ENST00000262160	NM_005901.5	317	tCC/tTT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581268	48581268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	259	646	0	ENST00000342988.3:c.572C>T	p.Ser191Leu	p.S191L	ENST00000342988	NM_005359.5	191	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11135098	11135098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	64	822	0	ENST00000344626.4:c.3065C>T	p.Ser1022Phe	p.S1022F	ENST00000344626	NM_003072.3	1022	tCc/tTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281362	15281362	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	243	595	0	ENST00000263388.2:c.4894G>A	p.Glu1632Lys	p.E1632K	ENST00000263388	NM_000435.2	1632	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289992	15289992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	341	860	0	ENST00000263388.2:c.3562G>A	p.Gly1188Ser	p.G1188S	ENST00000263388	NM_000435.2	1188	Ggt/Agt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943480	17943480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	208	598	0	ENST00000458235.1:c.2528C>A	p.Pro843Gln	p.P843Q	ENST00000458235	NM_000215.3	843	cCg/cAg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943675	17943675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	320	723	0	ENST00000458235.1:c.2414G>A	p.Gly805Asp	p.G805D	ENST00000458235	NM_000215.3	805	gGt/gAt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968294	18968294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	292	730	1	ENST00000262803.5:c.2134C>T	p.Pro712Ser	p.P712S	ENST00000262803	NM_002911.3	712	Cca/Tca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216193	36216194	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	TTA			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	253	590	1	ENST00000222270.7:c.3601_3602delinsTTA	p.Pro1201LeufsTer23	p.P1201Lfs*23	ENST00000222270	NM_014727.1	1201	CCg/TTAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216476	36216476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	344	818	1	ENST00000222270.7:c.3739C>T	p.Arg1247Cys	p.R1247C	ENST00000222270	NM_014727.1	1247	Cgt/Tgt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223533	36223533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	322	740	1	ENST00000222270.7:c.6083C>T	p.Ser2028Phe	p.S2028F	ENST00000222270	NM_014727.1	2028	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224016	36224016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	370	970	0	ENST00000222270.7:c.6566C>T	p.Ser2189Phe	p.S2189F	ENST00000222270	NM_014727.1	2189	tCc/tTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42790979	42790979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	279	618	0	ENST00000575354.2:c.124C>T	p.Pro42Ser	p.P42S	ENST00000575354	NM_015125.3	42	Ccc/Tcc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082286	16082286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	335	830	2	ENST00000281043.3:c.100G>A	p.Asp34Asn	p.D34N	ENST00000281043	NM_005378.4	34	Gac/Aac																																																																														
ALK	238	MSKCC	GRCh37	2	29456462	29456462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	328	833	0	ENST00000389048.3:c.2456G>A	p.Gly819Glu	p.G819E	ENST00000389048	NM_004304.4	819	gGa/gAa																																																																														
ALK	238	MSKCC	GRCh37	2	29498006	29498006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	232	567	0	ENST00000389048.3:c.2000G>A	p.Gly667Glu	p.G667E	ENST00000389048	NM_004304.4	667	gGg/gAg																																																																														
ALK	238	MSKCC	GRCh37	2	29519863	29519864	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	226	653	1	ENST00000389048.3:c.1707_1708delinsAA	p.Glu570Lys	p.E570K	ENST00000389048	NM_004304.4	569	gtGGag/gtAAag																																																																														
ALK	238	MSKCC	GRCh37	2	29917833	29917833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	346	811	0	ENST00000389048.3:c.835C>T	p.Pro279Ser	p.P279S	ENST00000389048	NM_004304.4	279	Cca/Tca																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693856	47693856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	228	556	2	ENST00000233146.2:c.1570C>T	p.Arg524Cys	p.R524C	ENST00000233146	NM_000251.2	524	Cgt/Tgt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027424	48027424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	174	458	0	ENST00000234420.5:c.2302C>T	p.Pro768Ser	p.P768S	ENST00000234420	NM_000179.2	768	Cct/Tct																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99189383	99189383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	276	654	0	ENST00000074304.5:c.2639C>T	p.Ala880Val	p.A880V	ENST00000074304	NM_001134224.1	880	gCt/gTt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682844	190682844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	264	687	1	ENST00000441310.2:c.520G>A	p.Asp174Asn	p.D174N	ENST00000441310	NM_000534.4	174	Gat/Aat																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561313	9561313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	183	404	0	ENST00000353224.5:c.469G>A	p.Asp157Asn	p.D157N	ENST00000353224	NM_177990.2	157	Gat/Aat																																																																														
SRC	6714	MSKCC	GRCh37	20	36022375	36022375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	318	811	1	ENST00000358208.4:c.428C>T	p.Ser143Phe	p.S143F	ENST00000358208		143	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306616	41306616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	295	687	0	ENST00000373198.4:c.1043G>A	p.Trp348Ter	p.W348*	ENST00000373198	NM_133170.3	348	tGg/tAg																																																																														
ERG	2078	MSKCC	GRCh37	21	39755759	39755759	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	183	441	0	ENST00000288319.7:c.1006A>G	p.Asn336Asp	p.N336D	ENST00000288319	NM_182918.3	336	Aac/Gac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259290	89259290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	190	502	1	ENST00000336596.2:c.434C>T	p.Thr145Ile	p.T145I	ENST00000336596	NM_005233.5	145	aCc/aTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55961005	55961005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	220	571	1	ENST00000263923.4:c.2935G>A	p.Glu979Lys	p.E979K	ENST00000263923	NM_002253.2	979	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55961775	55961775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	225	561	0	ENST00000263923.4:c.2786G>A	p.Arg929Lys	p.R929K	ENST00000263923	NM_002253.2	929	aGg/aAg																																																																														
KDR	3791	MSKCC	GRCh37	4	55962506	55962506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	219	496	0	ENST00000263923.4:c.2618G>A	p.Gly873Glu	p.G873E	ENST00000263923	NM_002253.2	873	gGa/gAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55981537	55981537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	174	459	0	ENST00000263923.4:c.400G>A	p.Gly134Arg	p.G134R	ENST00000263923	NM_002253.2	134	Gga/Aga																																																																														
TET2	54790	MSKCC	GRCh37	4	106157635	106157635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	175	438	0	ENST00000380013.4:c.2536G>A	p.Glu846Lys	p.E846K	ENST00000380013	NM_001127208.2	846	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106158002	106158002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	148	387	0	ENST00000380013.4:c.2903C>T	p.Pro968Leu	p.P968L	ENST00000380013	NM_001127208.2	968	cCc/cTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510155	187510155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	202	535	0	ENST00000441802.2:c.13358C>T	p.Pro4453Leu	p.P4453L	ENST00000441802	NM_005245.3	4453	cCc/cTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538257	187538257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	269	790	2	ENST00000441802.2:c.8977C>T	p.Leu2993Phe	p.L2993F	ENST00000441802	NM_005245.3	2993	Ctt/Ttt																																																																														
SDHA	6389	MSKCC	GRCh37	5	231043	231043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	50	573	0	ENST00000264932.6:c.823G>A	p.Asp275Asn	p.D275N	ENST00000264932	NM_004168.2	275	Gac/Aac																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31451654	31451654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	198	505	0	ENST00000344624.3:c.2668C>T	p.Arg890Cys	p.R890C	ENST00000344624		890	Cgt/Tgt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56174882	56174882	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	166	484	1	ENST00000399503.3:c.2041C>T	p.Gln681Ter	p.Q681*	ENST00000399503	NM_005921.1	681	Cag/Tag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685304	86685304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	84	214	0	ENST00000274376.6:c.3020A>G	p.Asp1007Gly	p.D1007G	ENST00000274376	NM_002890.2	1007	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112176606	112176606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	164	464	0	ENST00000257430.4:c.5315C>T	p.Pro1772Leu	p.P1772L	ENST00000257430	NM_000038.5	1772	cCa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112177991	112177991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	210	486	0	ENST00000257430.4:c.6700C>T	p.Pro2234Ser	p.P2234S	ENST00000257430	NM_000038.5	2234	Cca/Tca																																																																														
RAD50	10111	MSKCC	GRCh37	5	131953803	131953803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	186	499	0	ENST00000265335.6:c.3206G>A	p.Arg1069Lys	p.R1069K	ENST00000265335		1069	aGa/aAa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459720	149459720	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	280	736	0	ENST00000286301.3:c.487A>G	p.Thr163Ala	p.T163A	ENST00000286301	NM_005211.3	163	Acc/Gcc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497362	149497362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	229	623	1	ENST00000261799.4:c.2956C>T	p.Leu986Phe	p.L986F	ENST00000261799	NM_002609.3	986	Ctt/Ttt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149499070	149499070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	264	735	1	ENST00000261799.4:c.2758G>A	p.Gly920Ser	p.G920S	ENST00000261799	NM_002609.3	920	Ggt/Agt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046704	180046704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	283	755	1	ENST00000261937.6:c.2608G>A	p.Gly870Ser	p.G870S	ENST00000261937	NM_182925.4	870	Ggc/Agc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032249	26032249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	103	222	0	ENST00000244661.2:c.40G>A	p.Gly14Ser	p.G14S	ENST00000244661	NM_003537.3	14	Ggt/Agt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672345	30672345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	124	652	3	ENST00000376406.3:c.4615C>T	p.Pro1539Ser	p.P1539S	ENST00000376406	NM_014641.2	1539	Cct/Tct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188656	32188656	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	226	612	1	ENST00000375023.3:c.800-1G>A		p.X267_splice	ENST00000375023	NM_004557.3	267																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805935	32805935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1284	301	890	0	ENST00000374899.4:c.76C>T	p.Pro26Ser	p.P26S	ENST00000374899	NM_018833.2	26	Cct/Tct																																																																														
HGF	3082	MSKCC	GRCh37	7	81332070	81332071	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	104	291	0	ENST00000222390.5:c.2013_2014delinsAA	p.Asp672Asn	p.D672N	ENST00000222390	NM_000601.4	671	ggGGat/ggAAat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508363	106508364	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	121	285	1	ENST00000359195.3:c.357_358delinsAA	p.Asp120Asn	p.D120N	ENST00000359195	NM_002649.2	119	ctGGac/ctAAac																																																																														
MET	4233	MSKCC	GRCh37	7	116403314	116403314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	259	627	0	ENST00000397752.3:c.2575G>A	p.Glu859Lys	p.E859K	ENST00000397752	NM_000245.2	859	Gaa/Aaa																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205281	38205281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	357	1026	0	ENST00000317025.8:c.409C>T	p.Pro137Ser	p.P137S	ENST00000317025	NM_023034.1	137	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992757	68992757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	305	822	1	ENST00000288368.4:c.1722G>A	p.Met574Ile	p.M574I	ENST00000288368	NM_024870.2	574	atG/atA																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980527	70980527	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	261	759	2	ENST00000276594.2:c.850C>T	p.Gln284Ter	p.Q284*	ENST00000276594	NM_024504.3	284	Caa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521486	8521486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	258	649	0	ENST00000356435.5:c.752G>A	p.Gly251Glu	p.G251E	ENST00000356435		251	gGa/gAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27183498	27183498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	217	611	0	ENST00000380036.4:c.1072C>T	p.His358Tyr	p.H358Y	ENST00000380036	NM_000459.3	358	Cat/Tat																																																																														
ABL1	25	MSKCC	GRCh37	9	133760330	133760330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	233	586	0	ENST00000318560.5:c.2653C>T	p.Pro885Ser	p.P885S	ENST00000318560	NM_005157.4	885	Cca/Tca																																																																														
TSC1	7248	MSKCC	GRCh37	9	135796750	135796750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	137	371	0	ENST00000298552.3:c.737G>A	p.Arg246Lys	p.R246K	ENST00000298552	NM_001162426.1	246	aGg/aAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391767	139391767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	272	584	0	ENST00000277541.6:c.6424C>T	p.Pro2142Ser	p.P2142S	ENST00000277541	NM_017617.3	2142	Ccc/Tcc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913179	39913179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	223	257	0	ENST00000378444.4:c.4936C>T	p.Leu1646Phe	p.L1646F	ENST00000378444	NM_001123385.1	1646	Ctc/Ttc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820548	44820548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	205	310	0	ENST00000377967.4:c.245C>T	p.Ser82Phe	p.S82F	ENST00000377967	NM_021140.2	82	tCt/tTt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65305441	65305441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	181	473	0	ENST00000342505.4:c.2687C>T	p.Pro896Leu	p.P896L	ENST00000342505	NM_002227.2	896	cCc/cTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98238359	98238359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	225	556	2	ENST00000331920.6:c.1685C>T	p.Ala562Val	p.A562V	ENST00000331920	NM_000264.3	562	gCc/gTc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928690	49928690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	355	828	0	ENST00000296474.3:c.3584G>A	p.Ser1195Asn	p.S1195N	ENST00000296474	NM_002447.2	1195	aGc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	51	427	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	86	576	1	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	33	313	0	ENST00000304494.5:c.270C>G	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	33	313	0	ENST00000304494.5:c.270C>G	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	33	313	0	ENST00000304494.5:c.270C>G	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971144	21971144	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	33	314	0	ENST00000304494.5:c.214T>G	p.Cys72Gly	p.C72G	ENST00000304494	NM_000077.4	72	Tgc/Ggc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971144	21971144	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	33	314	0	ENST00000304494.5:c.214T>G	p.Cys72Gly	p.C72G	ENST00000304494	NM_000077.4	72	Tgc/Ggc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970969	21970971	+	stop_gained	Nonsense_Mutation	ONP	AGG	AGG	TGT			P-0026172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	84	518	0	ENST00000304494.5:c.387_389delinsACA	p.Tyr129_Leu130delinsTer	p.Y129_L130delins*	ENST00000304494	NM_000077.4	129	taCCTg/taACAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			136	177	133	0				ENST00000310581	NM_198253.2																																																																																
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913514		P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	327	526	1	ENST00000288135.5:c.2466T>A	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	255	269	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	255	269	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742054	145742054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	496	726	0	ENST00000428558.2:c.449C>T	p.Ser150Phe	p.S150F	ENST00000428558	NM_004260.3	150	tCc/tTc																																																																														
CBL	867	MSKCC	GRCh37	11	119149002	119149002	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			68	472	551	0	ENST00000264033.4:c.1222T>C	p.Trp408Arg	p.W408R	ENST00000264033	NM_005188.3	408	Tgg/Cgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	255	269	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024503	31024503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	439	531	0	ENST00000375687.4:c.3988C>T	p.Pro1330Ser	p.P1330S	ENST00000375687	NM_015338.5	1330	Cct/Tct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857172	9857172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	185	517	0	ENST00000330684.3:c.4229C>T	p.Ser1410Leu	p.S1410L	ENST00000330684	NM_001134407.1	1410	tCg/tTg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127920559	127920559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	460	643	0	ENST00000373547.4:c.340C>T	p.His114Tyr	p.H114Y	ENST00000373547	NM_002721.4	114	Cat/Tat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518854	187518854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	172	523	0	ENST00000441802.2:c.12350C>T	p.Ser4117Leu	p.S4117L	ENST00000441802	NM_005245.3	4117	tCg/tTg																																																																														
RET	5979	MSKCC	GRCh37	10	43610078	43610078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	262	588	2	ENST00000355710.3:c.2030G>A	p.Arg677Gln	p.R677Q	ENST00000355710	NM_020975.4	677	cGg/cAg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437443	110437443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	155	396	0	ENST00000375856.3:c.958C>T	p.Pro320Ser	p.P320S	ENST00000375856	NM_003749.2	320	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032077	10032077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	460	612	0	ENST00000330684.3:c.746C>T	p.Thr249Ile	p.T249I	ENST00000330684	NM_001134407.1	249	aCc/aTc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129397	30129397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	233	622	3	ENST00000263025.4:c.631C>T	p.Arg211Trp	p.R211W	ENST00000263025	NM_002746.2	211	Cgg/Tgg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39262616	39262616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	193	644	0	ENST00000402219.2:c.890C>T	p.Ser297Leu	p.S297L	ENST00000402219	NM_005633.3	297	tCg/tTg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99160399	99160399	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			594	271	598	3	ENST00000074304.5:c.878A>T	p.Gln293Leu	p.Q293L	ENST00000074304	NM_001134224.1	293	cAa/cTa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198283274	198283274	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	244	605	0	ENST00000335508.6:c.454T>C	p.Tyr152His	p.Y152H	ENST00000335508	NM_012433.2	152	Tac/Cac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566759	212566759	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	365	423	0	ENST00000342788.4:c.1422G>A	p.Trp474Ter	p.W474*	ENST00000342788	NM_005235.2	474	tgG/tgA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400176	41400176	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			551	411	582	0	ENST00000373198.4:c.583T>G	p.Phe195Val	p.F195V	ENST00000373198	NM_133170.3	195	Ttt/Gtt																																																																														
RHOA	387	MSKCC	GRCh37	3	49397727	49397727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			590	263	629	1	ENST00000418115.1:c.497G>A	p.Gly166Glu	p.G166E	ENST00000418115	NM_001664.2	166	gGa/gAa																																																																														
ATR	545	MSKCC	GRCh37	3	142281184	142281184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			290	385	529	0	ENST00000350721.4:c.1060C>T	p.Leu354Phe	p.L354F	ENST00000350721	NM_001184.3	354	Ctt/Ttt																																																																														
TP63	8626	MSKCC	GRCh37	3	189456518	189456518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	237	570	0	ENST00000264731.3:c.279G>A	p.Met93Ile	p.M93I	ENST00000264731	NM_003722.4	93	atG/atA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683951	117683951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	208	634	0	ENST00000368508.3:c.3196G>A	p.Glu1066Lys	p.E1066K	ENST00000368508	NM_002944.2	1066	Gaa/Aaa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152415600	152415600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	264	688	1	ENST00000206249.3:c.1450G>A	p.Asp484Asn	p.D484N	ENST00000206249	NM_000125.3	484	Gac/Aac																																																																														
MET	4233	MSKCC	GRCh37	7	116397829	116397832	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTGT	GTGT	TA			P-0026274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			518	244	519	2	ENST00000397752.3:c.2102+1_2102+4delinsTA		p.X701_splice	ENST00000397752	NM_000245.2	701																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	111	578	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0026281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	47	204	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0026281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	15	530	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	55	227	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	55	227	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	55	227	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43766952	43766952	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	57	441	0	ENST00000382044.4:c.1099C>G	p.Leu367Val	p.L367V	ENST00000382044	NM_001141980.1	367	Ctt/Gtt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	476	421	0	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	534	557	1	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	534	557	1	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
MGA	23269	MSKCC	GRCh37	15	42021422	42021422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	482	501	0	ENST00000219905.7:c.3718C>T	p.Arg1240Ter	p.R1240*	ENST00000219905	NM_001164273.1	1240	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	534	557	1	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112362	115112362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	478	425	0	ENST00000257566.3:c.1378G>A	p.Glu460Lys	p.E460K	ENST00000257566	NM_016569.3	460	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295253	+	upstream_gene_variant	5'Flank	ONP	GAGG	GAGG	AAGA			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	609	480	1				ENST00000310581	NM_198253.2																																																																																
PDGFRA	5156	MSKCC	GRCh37	4	55161294	55161294	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	182	305	0	ENST00000257290.5:c.3125C>T	p.Ser1042Leu	p.S1042L	ENST00000257290	NM_006206.4	1042	tCg/tTg																																																																														
NUF2	83540	MSKCC	GRCh37	1	163315582	163315582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	301	373	1	ENST00000271452.3:c.922G>A	p.Glu308Lys	p.E308K	ENST00000271452	NM_145697.2	308	Gaa/Aaa																																																																														
SUFU	51684	MSKCC	GRCh37	10	104353474	104353474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	323	616	0	ENST00000369902.3:c.679C>T	p.Pro227Ser	p.P227S	ENST00000369902	NM_016169.3	227	Cct/Tct																																																																														
CBL	867	MSKCC	GRCh37	11	119169197	119169197	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201620100		P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	241	462	0	ENST00000264033.4:c.2381C>T	p.Ser794Phe	p.S794F	ENST00000264033	NM_005188.3	794	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415920	49415920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	350	344	0	ENST00000301067.7:c.16427C>T	p.Ser5476Phe	p.S5476F	ENST00000301067	NM_003482.3	5476	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434310	49434310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	948	787	2	ENST00000301067.7:c.7243C>T	p.Pro2415Ser	p.P2415S	ENST00000301067	NM_003482.3	2415	Cct/Tct																																																																														
FLT1	2321	MSKCC	GRCh37	13	28913395	28913395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	260	552	0	ENST00000282397.4:c.2398G>A	p.Asp800Asn	p.D800N	ENST00000282397	NM_002019.4	800	Gac/Aac																																																																														
MGA	23269	MSKCC	GRCh37	15	42059056	42059056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	313	337	0	ENST00000219905.7:c.8776C>T	p.Leu2926Phe	p.L2926F	ENST00000219905	NM_001164273.1	2926	Ctt/Ttt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779313	3779313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	569	623	1	ENST00000262367.5:c.5735C>T	p.Ser1912Leu	p.S1912L	ENST00000262367	NM_004380.2	1912	tCa/tTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992648	72992648	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	405	389	0	ENST00000268489.5:c.1397A>T	p.Glu466Val	p.E466V	ENST00000268489	NM_006885.3	466	gAa/gTa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605057	46605057	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201157854		P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	874	766	1	ENST00000263734.3:c.1274C>T	p.Ser425Leu	p.S425L	ENST00000263734	NM_001430.4	425	tCa/tTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251649	212251649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	180	376	0	ENST00000342788.4:c.3410C>A	p.Pro1137Gln	p.P1137Q	ENST00000342788	NM_005235.2	1137	cCa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727139	40727140	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	462	614	2	ENST00000373198.4:c.3824_3825delinsTT	p.Thr1275Ile	p.T1275I	ENST00000373198	NM_133170.3	1275	aCC/aTT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944429	40944429	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	506	554	0	ENST00000373198.4:c.2073G>A	p.Trp691Ter	p.W691*	ENST00000373198	NM_133170.3	691	tgG/tgA																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130520	29130520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141568342		P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	504	436	0	ENST00000328354.6:c.190G>A	p.Glu64Lys	p.E64K	ENST00000328354	NM_007194.3	64	Gag/Aag																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431005	181431005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	400	649	0	ENST00000325404.1:c.857C>T	p.Pro286Leu	p.P286L	ENST00000325404	NM_003106.3	286	cCc/cTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441390	149441390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	324	606	0	ENST00000286301.3:c.1649G>A	p.Trp550Ter	p.W550*	ENST00000286301	NM_005211.3	550	tGg/tAg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275812	38275813	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	823	675	1	ENST00000425967.3:c.1456_1457delinsTT	p.Pro486Phe	p.P486F	ENST00000425967	NM_001174067.1	486	CCc/TTc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372150	55372151	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	296	582	3	ENST00000297316.4:c.840_841delinsAT	p.Pro281Ser	p.P281S	ENST00000297316	NM_022454.3	280	ggTCcc/ggATcc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68934313	68934313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	238	619	0	ENST00000288368.4:c.379G>A	p.Glu127Lys	p.E127K	ENST00000288368	NM_024870.2	127	Gag/Aag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11319348	11319348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	59	661	0	ENST00000361445.4:c.119C>T	p.Ala40Val	p.A40V	ENST00000361445	NM_004958.3	40	gCc/gTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262742	16262742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	37	355	2	ENST00000375759.3:c.10007G>A	p.Arg3336Gln	p.R3336Q	ENST00000375759	NM_015001.2	3336	cGg/cAg																																																																														
STK40	83931	MSKCC	GRCh37	1	36823971	36823971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	78	736	0	ENST00000373129.3:c.211G>A	p.Glu71Lys	p.E71K	ENST00000373129	NM_032017.1	71	Gag/Aag																																																																														
MPL	4352	MSKCC	GRCh37	1	43812494	43812495	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	68	591	1	ENST00000372470.3:c.1197_1198delinsAA	p.Glu400Lys	p.E400K	ENST00000372470	NM_005373.2	399	agGGag/agAAag																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45799242	45799242	+	intron_variant	Intron	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	36	535	1	ENST00000372115.3:c.158-9C>T		p.*53*	ENST00000372115	NM_001048171.1																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120459287	120459287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	64	534	0	ENST00000256646.2:c.6058G>A	p.Glu2020Lys	p.E2020K	ENST00000256646	NM_024408.3	2020	Gag/Aag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845330	156845330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	100	777	1	ENST00000524377.1:c.1373C>T	p.Pro458Leu	p.P458L	ENST00000524377	NM_002529.3	458	cCa/cTa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162722958	162722958	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	72	724	0	ENST00000367921.3:c.156G>A	p.Trp52Ter	p.W52*	ENST00000367921	NM_006182.2	52	tgG/tgA																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176012892	176012892	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	49	528	0	ENST00000367669.3:c.1484T>G	p.Val495Gly	p.V495G	ENST00000367669	NM_022457.5	495	gTt/gGt																																																																														
MDM4	4194	MSKCC	GRCh37	1	204513663	204513663	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	30	205	0	ENST00000367182.3:c.673G>A	p.Asp225Asn	p.D225N	ENST00000367182	NM_001278516.1	225	Gat/Aat																																																																														
FH	2271	MSKCC	GRCh37	1	241677004	241677004	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	39	460	0	ENST00000366560.3:c.277A>C	p.Ile93Leu	p.I93L	ENST00000366560	NM_000143.3	93	Att/Ctt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63759946	63759946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	39	411	0	ENST00000279873.7:c.599C>T	p.Ser200Phe	p.S200F	ENST00000279873	NM_032199.2	200	tCc/tTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717612	89717612	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	55	456	0	ENST00000371953.3:c.637C>T	p.Pro213Ser	p.P213S	ENST00000371953	NM_000314.4	213	Cct/Tct																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903681	114903681	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	64	639	1	ENST00000543371.1:c.686-1G>A		p.X229_splice	ENST00000543371	NM_001198531.1	229																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925412	114925412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	97	793	0	ENST00000543371.1:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000543371	NM_001198531.1	497	cCg/cTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925496	114925496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	70	762	0	ENST00000543371.1:c.1574C>T	p.Pro525Leu	p.P525L	ENST00000543371	NM_001198531.1	525	cCc/cTc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129346	64129346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	66	774	0	ENST00000334205.4:c.778C>T	p.Pro260Ser	p.P260S	ENST00000334205	NM_003942.2	260	Ccc/Tcc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572026	64572026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	91	803	1	ENST00000337652.1:c.1628C>A	p.Pro543Gln	p.P543Q	ENST00000337652	NM_130803.2	543	cCa/cAa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939797	71939797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	92	844	0	ENST00000298229.2:c.424C>T	p.Pro142Ser	p.P142S	ENST00000298229	NM_001567.3	142	Ccc/Tcc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125525118	125525118	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	35	376	0	ENST00000428830.2:c.1336-2A>G		p.X446_splice	ENST00000428830	NM_001114121.2	446																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398219	25398219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	45	546	0	ENST00000256078.4:c.100C>T	p.Pro34Ser	p.P34S	ENST00000256078	NM_033360.2	34	Cca/Tca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243466	46243466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	43	498	0	ENST00000334344.6:c.1819C>T	p.Pro607Ser	p.P607S	ENST00000334344	NM_152641.2	607	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416618	49416618	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	70	547	1	ENST00000301067.7:c.16093C>T	p.Gln5365Ter	p.Q5365*	ENST00000301067	NM_003482.3	5365	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424179	49424179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	60	488	1	ENST00000301067.7:c.13883C>T	p.Pro4628Leu	p.P4628L	ENST00000301067	NM_003482.3	4628	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434325	49434325	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	106	922	0	ENST00000301067.7:c.7228C>T	p.Arg2410Ter	p.R2410*	ENST00000301067	NM_003482.3	2410	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56490964	56490964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	68	724	1	ENST00000267101.3:c.2410G>A	p.Gly804Arg	p.G804R	ENST00000267101	NM_001982.3	804	Ggg/Agg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859583	57859583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	70	636	0	ENST00000228682.2:c.637G>A	p.Gly213Arg	p.G213R	ENST00000228682	NM_005269.2	213	Ggg/Agg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813421	102813421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	68	681	1	ENST00000307046.8:c.268G>A	p.Gly90Ser	p.G90S	ENST00000307046	NM_001111285.1	90	Ggc/Agc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416876	121416876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	87	1009	2	ENST00000257555.6:c.305C>T	p.Ala102Val	p.A102V	ENST00000257555		102	gCc/gTc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562160	21562160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1560	140	1287	2	ENST00000382592.4:c.1759G>A	p.Glu587Lys	p.E587K	ENST00000382592	NM_014572.2	587	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913678	32913678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	43	387	0	ENST00000380152.3:c.5186A>G	p.Lys1729Arg	p.K1729R	ENST00000380152		1729	aAa/aGa																																																																														
RB1	5925	MSKCC	GRCh37	13	48955467	48955467	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	40	449	1	ENST00000267163.4:c.1583T>C	p.Phe528Ser	p.F528S	ENST00000267163	NM_000321.2	528	tTt/tCt																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281462	49281462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	46	584	0	ENST00000282018.3:c.509C>T	p.Ser170Leu	p.S170L	ENST00000282018	NM_020377.2	170	tCa/tTa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135334	30135334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	54	573	0	ENST00000331968.5:c.484C>T	p.His162Tyr	p.H162Y	ENST00000331968	NM_002742.2	162	Cac/Tac																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023066	33023066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	48	463	0	ENST00000300177.4:c.175G>A	p.Gly59Arg	p.G59R	ENST00000300177	NM_001191322.1	59	Ggg/Agg																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675046	40675047	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	63	679	0	ENST00000249776.8:c.10_11delinsTT	p.Pro4Phe	p.P4F	ENST00000249776	NM_033286.3	4	CCc/TTc																																																																														
RAD51	5888	MSKCC	GRCh37	15	41021757	41021758	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	54	514	1	ENST00000267868.3:c.699_700delinsAA	p.Gly234Ser	p.G234S	ENST00000267868	NM_002875.4	233	tcGGgt/tcAAgt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714279	43714279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	75	785	0	ENST00000382044.4:c.3874G>A	p.Val1292Ile	p.V1292I	ENST00000382044	NM_001141980.1	1292	Gtt/Att																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43766936	43766936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	40	396	0	ENST00000382044.4:c.1115C>T	p.Pro372Leu	p.P372L	ENST00000382044	NM_001141980.1	372	cCt/cTt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729162	66729162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	68	702	3	ENST00000307102.5:c.370C>T	p.Pro124Ser	p.P124S	ENST00000307102	NM_002755.3	124	Ccg/Tcg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67358694	67358694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	52	456	0	ENST00000327367.4:c.202C>T	p.Pro68Ser	p.P68S	ENST00000327367	NM_005902.3	68	Ccc/Tcc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457650	67457650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	101	856	0	ENST00000327367.4:c.460G>A	p.Asp154Asn	p.D154N	ENST00000327367	NM_005902.3	154	Gac/Aac																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423535	88423535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	61	674	0	ENST00000360948.2:c.2300G>A	p.Gly767Glu	p.G767E	ENST00000360948	NM_001012338.2	767	gGa/gAa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99442728	99442728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	73	666	0	ENST00000268035.6:c.1125G>C	p.Glu375Asp	p.E375D	ENST00000268035	NM_000875.3	375	gaG/gaC																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640478	3640478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	88	899	2	ENST00000294008.3:c.3161C>T	p.Ser1054Leu	p.S1054L	ENST00000294008	NM_032444.2	1054	tCg/tTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646198	3646199	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	90	772	3	ENST00000294008.3:c.1879_1880delinsTT	p.Pro627Leu	p.P627L	ENST00000294008	NM_032444.2	627	CCg/TTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3841988	3841988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	48	384	0	ENST00000262367.5:c.1324C>G	p.Gln442Glu	p.Q442E	ENST00000262367	NM_004380.2	442	Caa/Gaa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041824	14041824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	63	429	0	ENST00000311895.7:c.2371C>T	p.Leu791Phe	p.L791F	ENST00000311895	NM_005236.2	791	Ctt/Ttt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646819	23646819	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	63	604	0	ENST00000261584.4:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000261584	NM_024675.3	350	Caa/Taa																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134413	30134413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	87	889	0	ENST00000263025.4:c.118C>T	p.Pro40Ser	p.P40S	ENST00000263025	NM_002746.2	40	Ccg/Tcg																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134452	30134452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	66	764	0	ENST00000263025.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000263025	NM_002746.2	27	Gag/Aag																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825577	50825577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	55	454	0	ENST00000398568.2:c.2208C>G	p.Ile736Met	p.I736M	ENST00000398568	NM_001042412.1	736	atC/atG																																																																														
CYLD	1540	MSKCC	GRCh37	16	50828213	50828213	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	50	576	0	ENST00000398568.2:c.2551A>T	p.Ile851Phe	p.I851F	ENST00000398568	NM_001042412.1	851	Atc/Ttc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991739	72991739	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	27	351	0	ENST00000268489.5:c.2306C>G	p.Thr769Ser	p.T769S	ENST00000268489	NM_006885.3	769	aCt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	71	720	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	19	764	0	ENST00000269305.4:c.530C>T	p.Pro177Leu	p.P177L	ENST00000269305	NM_001126112.2	177	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579875	7579876	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	81	776	0	ENST00000269305.4:c.37_38delinsTT	p.Pro13Phe	p.P13F	ENST00000269305	NM_001126112.2	13	CCt/TTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29508736	29508736	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	42	478	0	ENST00000358273.4:c.663G>A	p.Trp221Ter	p.W221*	ENST00000358273	NM_001042492.2	221	tgG/tgA																																																																														
NF1	4763	MSKCC	GRCh37	17	29508746	29508746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	46	508	0	ENST00000358273.4:c.673G>A	p.Glu225Lys	p.E225K	ENST00000358273	NM_001042492.2	225	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29592354	29592354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	41	493	1	ENST00000358273.4:c.4832G>A	p.Arg1611Gln	p.R1611Q	ENST00000358273	NM_001042492.2	1611	cGg/cAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29653057	29653057	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	41	411	0	ENST00000358273.4:c.5055G>A	p.Trp1685Ter	p.W1685*	ENST00000358273	NM_001042492.2	1685	tgG/tgA																																																																														
RARA	5914	MSKCC	GRCh37	17	38508692	38508692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	78	833	1	ENST00000254066.5:c.740C>T	p.Pro247Leu	p.P247L	ENST00000254066	NM_000964.3	247	cCc/cTc																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804295	46804295	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	77	677	0	ENST00000290295.7:c.712A>G	p.Asn238Asp	p.N238D	ENST00000290295	NM_006361.5	238	Aac/Gac																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533740	63533740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	53	485	0	ENST00000307078.5:c.1414C>T	p.His472Tyr	p.H472Y	ENST00000307078	NM_004655.3	472	Cac/Tac																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534430	63534430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	87	770	0	ENST00000307078.5:c.1091C>T	p.Pro364Leu	p.P364L	ENST00000307078	NM_004655.3	364	cCc/cTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5240319	5240319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	86	892	1	ENST00000357368.4:c.1595G>A	p.Arg532Gln	p.R532Q	ENST00000357368	NM_002850.3	532	cGg/cAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243951	5243951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	50	694	0	ENST00000357368.4:c.1531C>T	p.Pro511Ser	p.P511S	ENST00000357368	NM_002850.3	511	Ccc/Tcc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5273477	5273477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	99	772	0	ENST00000357368.4:c.355C>T	p.His119Tyr	p.H119Y	ENST00000357368	NM_002850.3	119	Cat/Tat																																																																														
INSR	3643	MSKCC	GRCh37	19	7122624	7122624	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	71	562	0	ENST00000302850.5:c.3529+1G>A		p.X1177_splice	ENST00000302850	NM_000208.2	1177																																																																															
INSR	3643	MSKCC	GRCh37	19	7184556	7184556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	57	592	1	ENST00000302850.5:c.745C>T	p.Pro249Ser	p.P249S	ENST00000302850	NM_000208.2	249	Ccc/Tcc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248656	10248656	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	51	569	0	ENST00000340748.4:c.4097C>G	p.Thr1366Arg	p.T1366R	ENST00000340748		1366	aCg/aGg																																																																														
CALR	811	MSKCC	GRCh37	19	13051178	13051178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	69	587	1	ENST00000316448.5:c.614C>T	p.Pro205Leu	p.P205L	ENST00000316448	NM_004343.3	205	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308372	15308372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	101	811	0	ENST00000263388.2:c.136G>A	p.Gly46Arg	p.G46R	ENST00000263388	NM_000435.2	46	Gga/Aga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366957	15366957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	61	597	0	ENST00000263377.2:c.1669G>A	p.Val557Met	p.V557M	ENST00000263377	NM_058243.2	557	Gtg/Atg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376368	15376368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1619	155	1179	0	ENST00000263377.2:c.646C>T	p.Pro216Ser	p.P216S	ENST00000263377	NM_058243.2	216	Cct/Tct																																																																														
UPF1	5976	MSKCC	GRCh37	19	18966754	18966754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	76	914	0	ENST00000262803.5:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000262803	NM_002911.3	522	cCg/cTg																																																																														
MEF2BNB-MEF2B	4207	MSKCC	GRCh37	19	19256769	19256770	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	55	662	2	ENST00000444486.3:c.831_832delinsTT	p.Gln278Ter	p.Q278*	ENST00000444486		277	ccCCag/ccTTag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210728	36210728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	93	820	0	ENST00000222270.7:c.479C>T	p.Pro160Leu	p.P160L	ENST00000222270	NM_014727.1	160	cCc/cTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223703	36223703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	96	901	1	ENST00000222270.7:c.6253C>T	p.Pro2085Ser	p.P2085S	ENST00000222270	NM_014727.1	2085	Cct/Tct																																																																														
ERF	2077	MSKCC	GRCh37	19	42753633	42753633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	101	855	0	ENST00000222329.4:c.631C>T	p.Pro211Ser	p.P211S	ENST00000222329	NM_006494.2	211	Cct/Tct																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45854973	45854973	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	81	740	0	ENST00000391945.4:c.2197C>T	p.Gln733Ter	p.Q733*	ENST00000391945	NM_000400.3	733	Cag/Tag																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082767	16082767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	39	250	2	ENST00000281043.3:c.581C>T	p.Pro194Leu	p.P194L	ENST00000281043	NM_005378.4	194	cCc/cTc																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735323	204735323	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	21	238	0	ENST00000302823.3:c.124C>T	p.Gln42Ter	p.Q42*	ENST00000302823	NM_005214.4	42	Cag/Tag																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735636	204735636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	38	380	1	ENST00000302823.3:c.437G>A	p.Gly146Glu	p.G146E	ENST00000302823	NM_005214.4	146	gGa/gAa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523294	9523294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	58	585	0	ENST00000353224.5:c.1943C>T	p.Pro648Leu	p.P648L	ENST00000353224	NM_177990.2	648	cCc/cTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561450	9561450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	64	564	0	ENST00000353224.5:c.332G>A	p.Gly111Glu	p.G111E	ENST00000353224	NM_177990.2	111	gGa/gAa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024344	31024344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	68	625	1	ENST00000375687.4:c.3829C>T	p.Pro1277Ser	p.P1277S	ENST00000375687	NM_015338.5	1277	Cca/Tca																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46252827	46252827	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	23	266	0	ENST00000371998.3:c.256G>A	p.Gly86Arg	p.G86R	ENST00000371998		86	Gga/Aga																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326526	62326526	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	96	895	2	ENST00000508582.2:c.3523G>T	p.Glu1175Ter	p.E1175*	ENST00000508582		1175	Gag/Tag																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655200	45655200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	68	618	0	ENST00000407780.3:c.652G>C	p.Glu218Gln	p.E218Q	ENST00000407780	NM_001283052.1	218	Gag/Cag																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121112	29121112	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	78	515	0	ENST00000328354.6:c.445G>A	p.Glu149Lys	p.E149K	ENST00000328354	NM_007194.3	149	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41556658	41556658	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	178	536	0	ENST00000263253.7:c.3603T>G	p.Cys1201Trp	p.C1201W	ENST00000263253	NM_001429.3	1201	tgT/tgG																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713495	30713495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	51	572	1	ENST00000359013.4:c.895G>A	p.Val299Met	p.V299M	ENST00000359013	NM_001024847.2	299	Gtg/Atg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799688	72799688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	57	674	0	ENST00000325599.8:c.1481C>T	p.Pro494Leu	p.P494L	ENST00000325599	NM_018130.2	494	cCc/cTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391074	89391075	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	56	746	2	ENST00000336596.2:c.1140_1141delinsGT	p.Arg381Cys	p.R381C	ENST00000336596	NM_005233.5	380	gtCCgc/gtGTgc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499478	89499479	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	52	540	3	ENST00000336596.2:c.2648_2649delinsAA	p.Arg883Gln	p.R883Q	ENST00000336596	NM_005233.5	883	cGG/cAA																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920463	134920463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	69	771	1	ENST00000398015.3:c.2278G>A	p.Val760Met	p.V760M	ENST00000398015	NM_004441.4	760	Gtg/Atg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170011212	170011212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	67	644	0	ENST00000295797.4:c.1333G>A	p.Glu445Lys	p.E445K	ENST00000295797	NM_002740.5	445	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808880	1808880	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs755526507		P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	100	854	0	ENST00000260795.2:c.2312C>T	p.Ser771Phe	p.S771F	ENST00000260795		771	tCc/tTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55561684	55561684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	30	243	0	ENST00000288135.5:c.74C>T	p.Ser25Phe	p.S25F	ENST00000288135	NM_000222.2	25	tCt/tTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55970899	55970899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	49	610	0	ENST00000263923.4:c.1898C>T	p.Ser633Phe	p.S633F	ENST00000263923	NM_002253.2	633	tCc/tTc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143324108	143324108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	20	295	0	ENST00000262992.4:c.355G>A	p.Asp119Asn	p.D119N	ENST00000262992	NM_001101669.1	119	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554840	187554840	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	27	309	0	ENST00000441802.2:c.4321C>T	p.Gln1441Ter	p.Q1441*	ENST00000441802	NM_005245.3	1441	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554842	187554842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	28	310	0	ENST00000441802.2:c.4319C>T	p.Thr1440Ile	p.T1440I	ENST00000441802	NM_005245.3	1440	aCt/aTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1294891	1294891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	11	126	0	ENST00000310581.5:c.214C>T	p.Arg72Cys	p.R72C	ENST00000310581	NM_198253.2	72	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	58	514	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295250	1295253	+	upstream_gene_variant	5'Flank	ONP	GAGG	GAGG	AAAA			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	70	631	0				ENST00000310581	NM_198253.2																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31526835	31526835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	96	888	0	ENST00000344624.3:c.205C>T	p.Pro69Ser	p.P69S	ENST00000344624		69	Ccc/Tcc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750742	57750742	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	57	399	0	ENST00000274289.3:c.1862T>A	p.Phe621Tyr	p.F621Y	ENST00000274289	NM_006622.3	621	tTt/tAt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589255	67589255	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	33	366	0	ENST00000274335.5:c.1243C>T	p.Gln415Ter	p.Q415*	ENST00000274335		415	Cag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590363	67590364	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	18	164	0	ENST00000274335.5:c.1426-1_1426delinsAA		p.X476_splice	ENST00000274335		476																																																																															
MSH3	4437	MSKCC	GRCh37	5	80021292	80021292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	46	386	0	ENST00000265081.6:c.1361G>A	p.Arg454Gln	p.R454Q	ENST00000265081	NM_002439.4	454	cGa/cAa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131976400	131976400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	54	634	4	ENST00000265335.6:c.3655G>T	p.Glu1219Ter	p.E1219*	ENST00000265335		1219	Gaa/Taa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497209	149497210	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	50	574	1	ENST00000261799.4:c.3108_3109delinsTT	p.Pro1037Ser	p.P1037S	ENST00000261799	NM_002609.3	1036	ggCCca/ggTTca																																																																														
FLT4	2324	MSKCC	GRCh37	5	180036982	180036983	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	54	757	2	ENST00000261937.6:c.3729_3730delinsAA	p.Ala1244Thr	p.A1244T	ENST00000261937	NM_182925.4	1243	ggGGct/ggAAct																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672192	30672192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	63	732	2	ENST00000376406.3:c.4768C>T	p.Pro1590Ser	p.P1590S	ENST00000376406	NM_014641.2	1590	Cct/Tct																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673752	30673752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	59	579	0	ENST00000376406.3:c.3208C>T	p.Leu1070Phe	p.L1070F	ENST00000376406	NM_014641.2	1070	Ctt/Ttt																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322925	31322925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1230	73	900	1	ENST00000412585.2:c.971G>A	p.Gly324Glu	p.G324E	ENST00000412585	NM_005514.6	324	gGa/gAa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109314067	109314067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	60	573	0	ENST00000436639.2:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000436639	NM_014454.2	386	Cgt/Tgt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117707020	117707020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	54	479	0	ENST00000368508.3:c.2130G>A	p.Met710Ile	p.M710I	ENST00000368508	NM_002944.2	710	atG/atA																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527821	157527821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	44	492	0	ENST00000346085.5:c.5546C>T	p.Pro1849Leu	p.P1849L	ENST00000346085	NM_020732.3	1849	cCc/cTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729966	41729966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	50	723	0	ENST00000242208.4:c.563C>A	p.Thr188Lys	p.T188K	ENST00000242208	NM_002192.2	188	aCa/aAa																																																																														
HGF	3082	MSKCC	GRCh37	7	81334975	81334975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	36	487	0	ENST00000222390.5:c.1852G>A	p.Gly618Ser	p.G618S	ENST00000222390	NM_000601.4	618	Ggc/Agc																																																																														
HGF	3082	MSKCC	GRCh37	7	81358961	81358961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	54	572	0	ENST00000222390.5:c.1000C>T	p.Pro334Ser	p.P334S	ENST00000222390	NM_000601.4	334	Cct/Tct																																																																														
HGF	3082	MSKCC	GRCh37	7	81388023	81388023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	40	481	0	ENST00000222390.5:c.352C>T	p.Leu118Phe	p.L118F	ENST00000222390	NM_000601.4	118	Ctc/Ttc																																																																														
MET	4233	MSKCC	GRCh37	7	116395519	116395520	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	57	497	1	ENST00000397752.3:c.1812_1813delinsTT	p.Leu605Phe	p.L605F	ENST00000397752	NM_000245.2	604	ctCCtt/ctTTtt																																																																														
MET	4233	MSKCC	GRCh37	7	116418986	116418986	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199763277		P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	43	294	0	ENST00000397752.3:c.3497G>A	p.Arg1166Gln	p.R1166Q	ENST00000397752	NM_000245.2	1166	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873923	151873923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	50	416	1	ENST00000262189.6:c.8615C>T	p.Pro2872Leu	p.P2872L	ENST00000262189	NM_170606.2	2872	cCt/cTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151876986	151876986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	35	402	1	ENST00000262189.6:c.7375C>T	p.Pro2459Ser	p.P2459S	ENST00000262189	NM_170606.2	2459	Cca/Tca																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194553	29194553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	85	873	0	ENST00000240100.2:c.1175C>T	p.Pro392Leu	p.P392L	ENST00000240100	NM_001394.6	392	cCc/cTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968118	68968118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	59	622	0	ENST00000288368.4:c.1147G>A	p.Glu383Lys	p.E383K	ENST00000288368	NM_024870.2	383	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484138	8484138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	44	531	0	ENST00000356435.5:c.3394C>A	p.Pro1132Thr	p.P1132T	ENST00000356435		1132	Cct/Act																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	23	189	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	23	189	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635227	87635227	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	67	694	0	ENST00000277120.3:c.2279G>A	p.Trp760Ter	p.W760*	ENST00000277120		760	tGg/tAg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250511	110250511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	49	626	2	ENST00000374672.4:c.164C>T	p.Pro55Leu	p.P55L	ENST00000374672	NM_004235.4	55	cCc/cTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412730	139412730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	195	738	0	ENST00000277541.6:c.1114C>T	p.Leu372Phe	p.L372F	ENST00000277541	NM_017617.3	372	Ctc/Ttc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413049	139413049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	109	593	0	ENST00000277541.6:c.1093C>T	p.Arg365Cys	p.R365C	ENST00000277541	NM_017617.3	365	Cgc/Tgc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223668	53223669	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	101	525	3	ENST00000375401.3:c.3690_3691delinsTT	p.Pro1231Ser	p.P1231S	ENST00000375401	NM_004187.3	1230	tcCCca/tcTTca																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410945	63410945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	61	356	1	ENST00000330258.3:c.2222C>T	p.Pro741Leu	p.P741L	ENST00000330258	NM_152424.3	741	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	106	780	0	ENST00000269305.4:c.842A>C	p.Asp281Ala	p.D281A	ENST00000269305	NM_001126112.2	281	gAc/gCc																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2491283	2491283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	60	345	0	ENST00000355716.4:c.326G>A	p.Arg109Gln	p.R109Q	ENST00000355716	NM_003820.2	109	cGg/cAg																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2493248	2493249	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	34	268	1	ENST00000355716.4:c.688_689delinsTT	p.Pro230Leu	p.P230L	ENST00000355716	NM_003820.2	230	CCa/TTa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780075	9780075	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	35	314	1	ENST00000377346.4:c.1339G>A	p.Asp447Asn	p.D447N	ENST00000377346	NM_005026.3	447	Gat/Aat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11182050	11182050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	47	211	0	ENST00000361445.4:c.6796C>T	p.Arg2266Cys	p.R2266C	ENST00000361445	NM_004958.3	2266	Cgc/Tgc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11301673	11301673	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	54	321	0	ENST00000361445.4:c.1478T>C	p.Met493Thr	p.M493T	ENST00000361445	NM_004958.3	493	aTg/aCg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256549	16256549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	51	310	2	ENST00000375759.3:c.3814G>A	p.Asp1272Asn	p.D1272N	ENST00000375759	NM_015001.2	1272	Gat/Aat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260195	16260195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	42	263	0	ENST00000375759.3:c.7460G>A	p.Gly2487Glu	p.G2487E	ENST00000375759	NM_015001.2	2487	gGg/gAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260516	16260516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	29	286	0	ENST00000375759.3:c.7781C>T	p.Ser2594Phe	p.S2594F	ENST00000375759	NM_015001.2	2594	tCt/tTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260788	16260788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	32	314	0	ENST00000375759.3:c.8053A>C	p.Thr2685Pro	p.T2685P	ENST00000375759	NM_015001.2	2685	Acc/Ccc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260792	16260792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	33	319	0	ENST00000375759.3:c.8057C>T	p.Pro2686Leu	p.P2686L	ENST00000375759	NM_015001.2	2686	cCt/cTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023622	27023622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	33	259	0	ENST00000324856.7:c.728C>T	p.Ala243Val	p.A243V	ENST00000324856	NM_006015.4	243	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101169	27101169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	51	332	0	ENST00000324856.7:c.4451C>T	p.Pro1484Leu	p.P1484L	ENST00000324856	NM_006015.4	1484	cCc/cTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106808	27106808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	52	307	0	ENST00000324856.7:c.6419C>T	p.Pro2140Leu	p.P2140L	ENST00000324856	NM_006015.4	2140	cCc/cTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107108	27107108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	54	244	0	ENST00000324856.7:c.6719C>T	p.Ala2240Val	p.A2240V	ENST00000324856	NM_006015.4	2240	gCc/gTc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599140	28599140	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	56	389	1	ENST00000253063.3:c.586C>T	p.Gln196Ter	p.Q196*	ENST00000253063	NM_031459.4	196	Cag/Tag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78414968	78414968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	49	234	0	ENST00000370768.2:c.1798C>T	p.Pro600Ser	p.P600S	ENST00000370768	NM_003902.3	600	Ccg/Tcg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510816	120510816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	31	257	0	ENST00000256646.2:c.1148C>T	p.Pro383Leu	p.P383L	ENST00000256646	NM_024408.3	383	cCt/cTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510856	120510856	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	22	197	0	ENST00000256646.2:c.1109-1G>A		p.X370_splice	ENST00000256646	NM_024408.3	370																																																																															
DDR2	4921	MSKCC	GRCh37	1	162729635	162729635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	26	251	0	ENST00000367921.3:c.721G>A	p.Asp241Asn	p.D241N	ENST00000367921	NM_006182.2	241	Gat/Aat																																																																														
DDR2	4921	MSKCC	GRCh37	1	162737090	162737090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	37	301	0	ENST00000367921.3:c.1234C>T	p.Leu412Phe	p.L412F	ENST00000367921	NM_006182.2	412	Ctc/Ttc																																																																														
MDM4	4194	MSKCC	GRCh37	1	204515968	204515968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	62	233	0	ENST00000367182.3:c.866C>T	p.Ser289Phe	p.S289F	ENST00000367182	NM_001278516.1	289	tCc/tTc																																																																														
PARP1	142	MSKCC	GRCh37	1	226562028	226562028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	53	267	0	ENST00000366794.5:c.1969G>A	p.Val657Ile	p.V657I	ENST00000366794	NM_001618.3	657	Gta/Ata																																																																														
PARP1	142	MSKCC	GRCh37	1	226574047	226574047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	34	213	0	ENST00000366794.5:c.814G>A	p.Val272Met	p.V272M	ENST00000366794	NM_001618.3	272	Gtg/Atg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097760	8097760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	51	316	0	ENST00000346208.3:c.142G>A	p.Asp48Asn	p.D48N	ENST00000346208		48	Gat/Aat																																																																														
RET	5979	MSKCC	GRCh37	10	43615613	43615613	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	44	279	0	ENST00000355710.3:c.2692G>C	p.Asp898His	p.D898H	ENST00000355710	NM_020975.4	898	Gat/Cat																																																																														
TET1	80312	MSKCC	GRCh37	10	70426982	70426982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	37	250	0	ENST00000373644.4:c.4642C>T	p.Pro1548Ser	p.P1548S	ENST00000373644	NM_030625.2	1548	Cct/Tct																																																																														
TET1	80312	MSKCC	GRCh37	10	70450771	70450772	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	43	214	1	ENST00000373644.4:c.5611_5612delinsAA	p.Gly1871Lys	p.G1871K	ENST00000373644	NM_030625.2	1871	GGg/AAg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104356989	104356990	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	40	236	2	ENST00000369902.3:c.849_850delinsAA	p.Asp284Asn	p.D284N	ENST00000369902	NM_016169.3	283	gaGGat/gaAAat																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112764446	112764446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	77	292	0	ENST00000369452.4:c.1055C>T	p.Ser352Phe	p.S352F	ENST00000369452	NM_007373.3	352	tCt/tTt																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112769577	112769577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	53	303	0	ENST00000369452.4:c.1529C>T	p.Pro510Leu	p.P510L	ENST00000369452	NM_007373.3	510	cCt/cTt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123263314	123263314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	28	232	0	ENST00000358487.5:c.1429C>T	p.Pro477Ser	p.P477S	ENST00000358487	NM_000141.4	477	Cca/Tca																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137830	64137830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	50	393	0	ENST00000334205.4:c.1931C>T	p.Ser644Phe	p.S644F	ENST00000334205	NM_003942.2	644	tCc/tTc																																																																														
PGR	5241	MSKCC	GRCh37	11	100933480	100933480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	18	89	0	ENST00000325455.5:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000325455	NM_001202474.3	637	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108150268	108150268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	51	269	0	ENST00000278616.4:c.3335C>T	p.Pro1112Leu	p.P1112L	ENST00000278616	NM_000051.3	1112	cCt/cTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352555	118352555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	42	297	1	ENST00000534358.1:c.3760C>T	p.Pro1254Ser	p.P1254S	ENST00000534358	NM_005933.3	1254	Cca/Tca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362609	118362611	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	TT			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	33	213	1	ENST00000534358.1:c.4970_4972delinsTT	p.Ser1657PhefsTer19	p.S1657Ffs*19	ENST00000534358	NM_005933.3	1657	tCTCgg/tTTgg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362638	118362638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	31	178	0	ENST00000534358.1:c.4999C>T	p.Arg1667Trp	p.R1667W	ENST00000534358	NM_005933.3	1667	Cgg/Tgg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022552	12022552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	78	304	1	ENST00000396373.4:c.658G>A	p.Gly220Arg	p.G220R	ENST00000396373	NM_001987.4	220	Gga/Aga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244994	46244994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	25	310	0	ENST00000334344.6:c.3088G>A	p.Val1030Ile	p.V1030I	ENST00000334344	NM_152641.2	1030	Gtt/Att																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285842	46285842	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	22	312	0	ENST00000334344.6:c.5110G>T	p.Glu1704Ter	p.E1704*	ENST00000334344	NM_152641.2	1704	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421799	49421799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	96	335	0	ENST00000301067.7:c.14508G>C	p.Glu4836Asp	p.E4836D	ENST00000301067	NM_003482.3	4836	gaG/gaC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426048	49426048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	29	352	0	ENST00000301067.7:c.12440C>T	p.Ser4147Phe	p.S4147F	ENST00000301067	NM_003482.3	4147	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433541	49433542	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	37	403	0	ENST00000301067.7:c.8011_8012del	p.Gly2671ProfsTer2	p.G2671Pfs*2	ENST00000301067	NM_003482.3	2671	GGc/c																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440500	49440500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	131	370	0	ENST00000301067.7:c.4310C>T	p.Ser1437Phe	p.S1437F	ENST00000301067	NM_003482.3	1437	tCc/tTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487972	56487972	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	84	259	0	ENST00000267101.3:c.1703C>T	p.Ser568Leu	p.S568L	ENST00000267101	NM_001982.3	568	tCg/tTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495039	56495040	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	31	333	0	ENST00000267101.3:c.3396_3397delinsTT	p.His1133Tyr	p.H1133Y	ENST00000267101	NM_001982.3	1132	taCCat/taTTat																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865686	57865686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	111	383	1	ENST00000228682.2:c.3163G>A	p.Glu1055Lys	p.E1055K	ENST00000228682	NM_005269.2	1055	Gag/Aag																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811666	102811666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	139	347	1	ENST00000307046.8:c.518G>A	p.Gly173Glu	p.G173E	ENST00000307046	NM_001111285.1	173	gGa/gAa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924309	112924309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	111	387	1	ENST00000351677.2:c.1255C>T	p.His419Tyr	p.H419Y	ENST00000351677	NM_002834.3	419	Cac/Tac																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112401	115112401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	70	283	0	ENST00000257566.3:c.1339C>T	p.Arg447Cys	p.R447C	ENST00000257566	NM_016569.3	447	Cgc/Tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133220050	133220057	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTCTCT	AGGTCTCT	-			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	35	311	0	ENST00000320574.5:c.4380_4387del	p.Glu1461CysfsTer3	p.E1461Cfs*3	ENST00000320574	NM_006231.2	1460	gcAGAGACCTtt/gctt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563276	21563277	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	56	384	1	ENST00000382592.4:c.642_643delinsTT	p.Leu215Phe	p.L215F	ENST00000382592	NM_014572.2	214	taCCtt/taTTtt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623896	28623896	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	50	242	1	ENST00000241453.7:c.758C>G	p.Pro253Arg	p.P253R	ENST00000241453	NM_004119.2	253	cCt/cGt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012419	29012419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	81	309	0	ENST00000282397.4:c.452G>A	p.Gly151Glu	p.G151E	ENST00000282397	NM_002019.4	151	gGa/gAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912277	32912277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	84	262	0	ENST00000380152.3:c.3785C>T	p.Ser1262Leu	p.S1262L	ENST00000380152		1262	tCa/tTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913169	32913171	+	missense_variant	Missense_Mutation	ONP	TAG	TAG	AAA			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	73	313	0	ENST00000380152.3:c.4677_4679delinsAAA	p.Phe1559_Ser1560delinsLeuAsn	p.F1559_S1560delinsLN	ENST00000380152		1559	ttTAGc/ttAAAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972351	32972351	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	69	268	0	ENST00000380152.3:c.9701T>C	p.Met3234Thr	p.M3234T	ENST00000380152		3234	aTg/aCg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435531	110435531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	77	300	0	ENST00000375856.3:c.2870C>G	p.Ser957Trp	p.S957W	ENST00000375856	NM_003749.2	957	tCg/tGg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100227	30100227	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	47	193	0	ENST00000331968.5:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331968	NM_002742.2	465	Gaa/Aaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81534606	81534606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	64	271	0	ENST00000298171.2:c.251C>T	p.Ser84Phe	p.S84F	ENST00000298171	NM_000369.2	84	tCt/tTt																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	52	406	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42021492	42021492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	52	370	0	ENST00000219905.7:c.3788C>T	p.Ser1263Leu	p.S1263L	ENST00000219905	NM_001164273.1	1263	tCa/tTa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396436	396436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	64	345	0	ENST00000262320.3:c.590C>T	p.Thr197Ile	p.T197I	ENST00000262320	NM_003502.3	197	aCc/aTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639407	3639407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	60	356	0	ENST00000294008.3:c.4232G>A	p.Arg1411Lys	p.R1411K	ENST00000294008	NM_032444.2	1411	aGa/aAa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639422	3639422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	55	343	0	ENST00000294008.3:c.4217C>T	p.Ser1406Phe	p.S1406F	ENST00000294008	NM_032444.2	1406	tCc/tTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639900	3639900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	49	356	0	ENST00000294008.3:c.3739G>A	p.Glu1247Lys	p.E1247K	ENST00000294008	NM_032444.2	1247	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857061	9857061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	38	204	0	ENST00000330684.3:c.4340C>T	p.Ser1447Phe	p.S1447F	ENST00000330684	NM_001134407.1	1447	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857464	9857464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	52	252	0	ENST00000330684.3:c.3937C>T	p.Leu1313Phe	p.L1313F	ENST00000330684	NM_001134407.1	1313	Ctc/Ttc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273977	10273977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	52	380	1	ENST00000330684.3:c.292C>T	p.Leu98Phe	p.L98F	ENST00000330684	NM_001134407.1	98	Ctc/Ttc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662381	67662381	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	51	358	0	ENST00000264010.4:c.1627A>T	p.Lys543Ter	p.K543*	ENST00000264010	NM_006565.3	543	Aag/Tag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350234	89350234	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	66	366	1	ENST00000301030.4:c.2716C>T	p.Arg906Ter	p.R906*	ENST00000301030	NM_001256183.1	906	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579357	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	ACG	ACG	CA			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	56	381	0	ENST00000269305.4:c.328_330delinsTG	p.Arg110CysfsTer13	p.R110Cfs*13	ENST00000269305	NM_001126112.2	110	CGT/TG																																																																														
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	61	407	1	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12044470	12044470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	26	161	0	ENST00000353533.5:c.1093C>T	p.Pro365Ser	p.P365S	ENST00000353533	NM_003010.3	365	Ccc/Tcc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965120	15965121	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	23	220	0	ENST00000268712.3:c.5475_5476delinsAA	p.Asp1826Asn	p.D1826N	ENST00000268712	NM_006311.3	1825	gtGGat/gtAAat																																																																														
FLCN	201163	MSKCC	GRCh37	17	17124889	17124889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	54	364	1	ENST00000285071.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000285071	NM_144997.5	278	cCg/cTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29587393	29587394	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	42	210	1	ENST00000358273.4:c.4437_4438delCCinsTT	p.Leu1480Phe	p.L1480F	ENST00000358273	NM_001042492.2	1479	ttCCtt/ttTTtt																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441883	40441884	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	55	381	2	ENST00000345506.4:c.129-1_129delinsAA		p.X43_splice	ENST00000345506	NM_003152.3	43																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59770793	59770793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	45	208	0	ENST00000259008.2:c.2573C>T	p.Ser858Phe	p.S858F	ENST00000259008	NM_032043.2	858	tCt/tTt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533089	63533090	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	29	255	1	ENST00000307078.5:c.1804_1805delinsAA	p.Gly602Lys	p.G602K	ENST00000307078	NM_004655.3	602	GGa/AAa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211120	2211121	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	57	359	1	ENST00000398665.3:c.1374_1375delinsTT	p.Pro459Ser	p.P459S	ENST00000398665	NM_032482.2	458	agCCcg/agTTcg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226410	2226410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	40	404	0	ENST00000398665.3:c.3890C>T	p.Pro1297Leu	p.P1297L	ENST00000398665	NM_032482.2	1297	cCc/cTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274223	5274223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	42	321	0	ENST00000357368.4:c.224C>T	p.Ser75Phe	p.S75F	ENST00000357368	NM_002850.3	75	tCt/tTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602775	10602775	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	53	331	0	ENST00000171111.5:c.803T>G	p.Leu268Arg	p.L268R	ENST00000171111	NM_203500.1	268	cTg/cGg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094996	11094996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	46	362	0	ENST00000344626.4:c.169C>T	p.Pro57Ser	p.P57S	ENST00000344626	NM_003072.3	57	Ccc/Tcc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376238	15376238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	47	308	0	ENST00000263377.2:c.776C>T	p.Pro259Leu	p.P259L	ENST00000263377	NM_058243.2	259	cCc/cTc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17387377	17387377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	63	411	0	ENST00000359435.4:c.643C>T	p.Leu215Phe	p.L215F	ENST00000359435	NM_001033549.1	215	Ctt/Ttt																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256784	19256784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	44	271	2	ENST00000162023.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000162023		310	tCc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224313	36224313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	108	404	0	ENST00000222270.7:c.6863C>T	p.Ser2288Phe	p.S2288F	ENST00000222270	NM_014727.1	2288	tCc/tTc																																																																														
AKT2	208	MSKCC	GRCh37	19	40739813	40739813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	96	379	0	ENST00000392038.2:c.1412C>T	p.Pro471Leu	p.P471L	ENST00000392038	NM_001626.4	471	cCc/cTc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753764	42753764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	60	405	0	ENST00000222329.4:c.500C>T	p.Ser167Leu	p.S167L	ENST00000222329	NM_006494.2	167	tCa/tTa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463244	25463244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	41	311	1	ENST00000264709.3:c.2249C>T	p.Pro750Leu	p.P750L	ENST00000264709	NM_175629.2	750	cCc/cTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25471028	25471028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	55	337	0	ENST00000264709.3:c.733C>T	p.Pro245Ser	p.P245S	ENST00000264709	NM_175629.2	245	Cct/Tct																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966405	25966405	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	98	399	1	ENST00000435504.4:c.2801A>T	p.Asn934Ile	p.N934I	ENST00000435504		934	aAc/aTc																																																																														
ALK	238	MSKCC	GRCh37	2	29543651	29543652	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	79	296	1	ENST00000389048.3:c.1511_1512delinsAA	p.Arg504Lys	p.R504K	ENST00000389048	NM_004304.4	504	aGG/aAA																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656991	47656991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	94	243	0	ENST00000233146.2:c.1187G>T	p.Arg396Ile	p.R396I	ENST00000233146	NM_000251.2	396	aGa/aTa																																																																														
CASP8	841	MSKCC	GRCh37	2	202137453	202137453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	73	315	0	ENST00000358485.4:c.681C>A	p.Asn227Lys	p.N227K	ENST00000358485	NM_001080125.1	227	aaC/aaA																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204732733	204732733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	57	282	0	ENST00000302823.3:c.68C>T	p.Thr23Ile	p.T23I	ENST00000302823	NM_005214.4	23	aCt/aTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248452	212248452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	39	195	0	ENST00000342788.4:c.3815G>A	p.Gly1272Glu	p.G1272E	ENST00000342788	NM_005235.2	1272	gGg/gAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488712	212488712	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	42	310	0	ENST00000342788.4:c.2137T>G	p.Leu713Val	p.L713V	ENST00000342788	NM_005235.2	713	Ttg/Gtg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	213403203	213403203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	39	286	0	ENST00000342788.4:c.52G>A	p.Gly18Arg	p.G18R	ENST00000342788	NM_005235.2	18	Ggg/Agg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	64	241	1	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624795	9624795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	51	226	1	ENST00000353224.5:c.182C>T	p.Pro61Leu	p.P61L	ENST00000353224	NM_177990.2	61	cCc/cTc																																																																														
SRC	6714	MSKCC	GRCh37	20	36031164	36031165	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	57	275	1	ENST00000358208.4:c.1283_1284delinsTT	p.Pro428Leu	p.P428L	ENST00000358208		428	cCC/cTT																																																																														
TOP1	7150	MSKCC	GRCh37	20	39741513	39741513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	64	258	0	ENST00000361337.2:c.1400C>T	p.Ser467Phe	p.S467F	ENST00000361337	NM_003286.2	467	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40864890	40864890	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	55	266	0	ENST00000373198.4:c.2378C>G	p.Ala793Gly	p.A793G	ENST00000373198	NM_133170.3	793	gCt/gGt																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319699	62319699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	47	366	0	ENST00000508582.2:c.1754C>T	p.Pro585Leu	p.P585L	ENST00000508582		585	cCt/cTt																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62325771	62325772	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	52	378	3	ENST00000508582.2:c.3111_3112delinsTT	p.Gln1038Ter	p.Q1038*	ENST00000508582		1037	gcCCag/gcTTag																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206731	36206731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	69	367	1	ENST00000300305.3:c.781C>T	p.Pro261Ser	p.P261S	ENST00000300305		261	Cct/Tct																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656905	45656905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	95	324	0	ENST00000407780.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000407780	NM_001283052.1	84	gCc/gTc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45658336	45658336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	49	319	1	ENST00000407780.3:c.50G>A	p.Arg17Gln	p.R17Q	ENST00000407780	NM_001283052.1	17	cGa/cAa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130436	29130436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	60	338	0	ENST00000328354.6:c.274C>T	p.Pro92Ser	p.P92S	ENST00000328354	NM_007194.3	92	Ccc/Tcc																																																																														
NF2	4771	MSKCC	GRCh37	22	30057282	30057282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	54	285	0	ENST00000338641.4:c.764C>T	p.Ser255Phe	p.S255F	ENST00000338641	NM_000268.3	255	tCc/tTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584776	52584777	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	47	304	0	ENST00000394830.3:c.4345_4346delinsTT	p.Pro1449Leu	p.P1449L	ENST00000394830	NM_018313.4	1449	CCa/TTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259510	89259510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	36	253	0	ENST00000336596.2:c.654G>A	p.Met218Ile	p.M218I	ENST00000336596	NM_005233.5	218	atG/atA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445085	89445085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	52	260	0	ENST00000336596.2:c.1405G>A	p.Asp469Asn	p.D469N	ENST00000336596	NM_005233.5	469	Gac/Aac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480459	89480459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	52	238	1	ENST00000336596.2:c.2296G>A	p.Gly766Arg	p.G766R	ENST00000336596	NM_005233.5	766	Gga/Aga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498474	89498474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	37	217	0	ENST00000336596.2:c.2446G>A	p.Glu816Lys	p.E816K	ENST00000336596	NM_005233.5	816	Gag/Aag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499371	89499371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	44	228	0	ENST00000336596.2:c.2541G>A	p.Met847Ile	p.M847I	ENST00000336596	NM_005233.5	847	atG/atA																																																																														
ATR	545	MSKCC	GRCh37	3	142215363	142215363	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	45	231	0	ENST00000350721.4:c.5739-1G>A		p.X1913_splice	ENST00000350721	NM_001184.3	1913																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927472	178927472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	38	182	0	ENST00000263967.3:c.1235G>A	p.Arg412Gln	p.R412Q	ENST00000263967	NM_006218.2	412	cGa/cAa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167818	185167818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	55	241	0	ENST00000265026.3:c.1141G>A	p.Gly381Arg	p.G381R	ENST00000265026	NM_004721.4	381	Gga/Aga																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129869	55129869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	64	315	1	ENST00000257290.5:c.403G>A	p.Asp135Asn	p.D135N	ENST00000257290	NM_006206.4	135	Gat/Aat																																																																														
KIT	3815	MSKCC	GRCh37	4	55565847	55565847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	96	308	0	ENST00000288135.5:c.671G>A	p.Arg224Lys	p.R224K	ENST00000288135	NM_000222.2	224	aGg/aAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467539	66467539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	42	199	0	ENST00000273854.3:c.730C>T	p.Pro244Ser	p.P244S	ENST00000273854	NM_004439.5	244	Cct/Tct																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467835	66467835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	25	213	0	ENST00000273854.3:c.434G>A	p.Gly145Glu	p.G145E	ENST00000273854	NM_004439.5	145	gGg/gAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467998	66467998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	19	151	0	ENST00000273854.3:c.271G>A	p.Glu91Lys	p.E91K	ENST00000273854	NM_004439.5	91	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106196300	106196300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	40	149	0	ENST00000380013.4:c.4633C>A	p.Gln1545Lys	p.Q1545K	ENST00000380013	NM_001127208.2	1545	Cag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1278800	1278800	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	43	280	0	ENST00000310581.5:c.2242C>T	p.Gln748Ter	p.Q748*	ENST00000310581	NM_198253.2	748	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	31	211	0				ENST00000310581	NM_198253.2																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31511271	31511271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	68	321	0	ENST00000344624.3:c.1303G>A	p.Val435Met	p.V435M	ENST00000344624		435	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112176282	112176282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	39	251	0	ENST00000257430.4:c.4991C>T	p.Ser1664Phe	p.S1664F	ENST00000257430	NM_000038.5	1664	tCc/tTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149456989	149456989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	35	230	0	ENST00000286301.3:c.739C>T	p.Pro247Ser	p.P247S	ENST00000286301	NM_005211.3	247	Cct/Tct																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459889	149459890	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	47	359	0	ENST00000286301.3:c.317_318delinsAA	p.Arg106Gln	p.R106Q	ENST00000286301	NM_005211.3	106	cGG/cAA																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500876	149500876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	52	329	0	ENST00000261799.4:c.2354G>A	p.Arg785Lys	p.R785K	ENST00000261799	NM_002609.3	785	aGg/aAg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518076	176518076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	50	342	0	ENST00000292408.4:c.574C>A	p.His192Asn	p.H192N	ENST00000292408	NM_213647.1	192	Cat/Aat																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522624	176522624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	46	404	1	ENST00000292408.4:c.1721C>T	p.Pro574Leu	p.P574L	ENST00000292408	NM_213647.1	574	cCc/cTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524595	176524595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	58	466	0	ENST00000292408.4:c.2327C>T	p.Ser776Phe	p.S776F	ENST00000292408	NM_213647.1	776	tCc/tTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176684094	176684095	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	46	280	0	ENST00000439151.2:c.4908_4909delinsTT	p.Leu1637Phe	p.L1637F	ENST00000439151	NM_022455.4	1636	tcCCtc/tcTTtc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722200	176722200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	37	233	1	ENST00000439151.2:c.7831C>T	p.Pro2611Ser	p.P2611S	ENST00000439151	NM_022455.4	2611	Ccc/Tcc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031939	26031939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	47	204	0	ENST00000244661.2:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000244661	NM_003537.3	117	cGa/cAa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032257	26032257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	22	121	0	ENST00000244661.2:c.32C>T	p.Ser11Phe	p.S11F	ENST00000244661	NM_003537.3	11	tCc/tTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671212	30671212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	77	383	0	ENST00000376406.3:c.5665G>A	p.Glu1889Lys	p.E1889K	ENST00000376406	NM_014641.2	1889	Gaa/Aaa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673218	30673218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	33	270	0	ENST00000376406.3:c.3742C>T	p.Pro1248Ser	p.P1248S	ENST00000376406	NM_014641.2	1248	Cct/Tct																																																																														
STK19	8859	MSKCC	GRCh37	6	31940145	31940145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	100	382	1	ENST00000375331.2:c.287C>T	p.Ser96Phe	p.S96F	ENST00000375331	NM_004197.1	96	tCc/tTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188003	32188003	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	92	384	0	ENST00000375023.3:c.1218A>T	p.Gln406His	p.Q406H	ENST00000375023	NM_004557.3	406	caA/caT																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815727	32815728	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	79	363	0	ENST00000354258.4:c.1888_1889delinsTT	p.Pro630Phe	p.P630F	ENST00000354258	NM_000593.5	630	CCc/TTc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748581	43748581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139206878		P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	54	219	0	ENST00000523873.1:c.535C>T	p.Pro179Ser	p.P179S	ENST00000523873		179	Cct/Tct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964481	93964481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	61	236	0	ENST00000369303.4:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000369303	NM_004440.3	806	Gaa/Aaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965586	93965586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	60	276	1	ENST00000369303.4:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000369303	NM_004440.3	781	cGa/cAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967841	93967841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	66	274	0	ENST00000369303.4:c.2086C>T	p.His696Tyr	p.H696Y	ENST00000369303	NM_004440.3	696	Cat/Tat																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066549	94066549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	45	224	1	ENST00000369303.4:c.1210G>A	p.Asp404Asn	p.D404N	ENST00000369303	NM_004440.3	404	Gac/Aac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066611	94066611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	47	254	0	ENST00000369303.4:c.1148G>A	p.Gly383Glu	p.G383E	ENST00000369303	NM_004440.3	383	gGg/gAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709081	117709081	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	40	305	0	ENST00000368508.3:c.1876T>G	p.Phe626Val	p.F626V	ENST00000368508	NM_002944.2	626	Ttc/Gtc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138197163	138197164	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	55	198	0	ENST00000237289.4:c.665_666delinsTT	p.Ser222Phe	p.S222F	ENST00000237289	NM_001270507.1	222	tCC/tTT																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005666	150005666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	40	212	0	ENST00000253339.5:c.559C>T	p.Pro187Ser	p.P187S	ENST00000253339		187	Cct/Tct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100526	157100526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	36	119	0	ENST00000346085.5:c.1463C>T	p.Pro488Leu	p.P488L	ENST00000346085	NM_020732.3	488	cCg/cTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157431689	157431689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	66	301	0	ENST00000346085.5:c.2365G>A	p.Glu789Lys	p.E789K	ENST00000346085	NM_020732.3	789	Gaa/Aaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522148	157522148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	50	299	0	ENST00000346085.5:c.4420C>T	p.Pro1474Ser	p.P1474S	ENST00000346085	NM_020732.3	1474	Ccc/Tcc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527796	157527796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	41	280	0	ENST00000346085.5:c.5521C>T	p.Pro1841Ser	p.P1841S	ENST00000346085	NM_020732.3	1841	Cct/Tct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528682	157528682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	70	311	0	ENST00000346085.5:c.6407C>T	p.Ser2136Leu	p.S2136L	ENST00000346085	NM_020732.3	2136	tCg/tTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983863	2983863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	23	289	0	ENST00000396946.4:c.667C>G	p.Arg223Gly	p.R223G	ENST00000396946	NM_032415.4	223	Cga/Gga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729381	41729381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	34	298	0	ENST00000242208.4:c.1148C>T	p.Pro383Leu	p.P383L	ENST00000242208	NM_002192.2	383	cCc/cTc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367282	50367282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	102	263	0	ENST00000331340.3:c.89C>T	p.Pro30Leu	p.P30L	ENST00000331340	NM_006060.4	30	cCc/cTc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274841	38274841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	38	249	0	ENST00000425967.3:c.1739G>A	p.Gly580Glu	p.G580E	ENST00000425967	NM_001174067.1	580	gGg/gAg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981941	70981941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	52	396	0	ENST00000276594.2:c.155C>T	p.Pro52Leu	p.P52L	ENST00000276594	NM_024504.3	52	cCt/cTt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145736900	145736900	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	91	411	0	ENST00000428558.2:c.3541C>T	p.Arg1181Ter	p.R1181*	ENST00000428558	NM_004260.3	1181	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	66	247	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	66	247	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	66	247	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87339164	87339164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	125	260	0	ENST00000277120.3:c.746C>T	p.Ser249Phe	p.S249F	ENST00000277120		249	tCc/tTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220479	98220479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	62	336	0	ENST00000331920.6:c.2984G>T	p.Arg995Met	p.R995M	ENST00000331920	NM_000264.3	995	aGg/aTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760616	133760616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	36	457	0	ENST00000318560.5:c.2939C>T	p.Pro980Leu	p.P980L	ENST00000318560	NM_005157.4	980	cCc/cTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395288	139395288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	155	298	0	ENST00000277541.6:c.5650C>A	p.Pro1884Thr	p.P1884T	ENST00000277541	NM_017617.3	1884	Ccg/Acg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396538	139396538	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	20	286	0	ENST00000277541.6:c.5387C>T	p.Pro1796Leu	p.P1796L	ENST00000277541	NM_017617.3	1796	cCc/cTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396774	139396775	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	54	325	1	ENST00000277541.6:c.5333_5334delinsTT	p.Ala1778Val	p.A1778V	ENST00000277541	NM_017617.3	1778	gCC/gTT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139410118	139410118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	97	356	1	ENST00000277541.6:c.1720C>T	p.Pro574Ser	p.P574S	ENST00000277541	NM_017617.3	574	Ccc/Tcc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418372	139418372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	61	376	1	ENST00000277541.6:c.200C>T	p.Pro67Leu	p.P67L	ENST00000277541	NM_017617.3	67	cCc/cTc																																																																														
AR	367	MSKCC	GRCh37	X	66931393	66931393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	72	173	0	ENST00000374690.3:c.2035G>A	p.Glu679Lys	p.E679K	ENST00000374690	NM_000044.3	679	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70344985	70344985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	67	145	0	ENST00000374080.3:c.2215C>T	p.Pro739Ser	p.P739S	ENST00000374080		739	Ccc/Tcc																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2493248	2493248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	34	269	0	ENST00000355716.4:c.688C>T	p.Pro230Ser	p.P230S	ENST00000355716	NM_003820.2	230	Cca/Tca																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598909	28598909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	203	400	2	ENST00000253063.3:c.469C>T	p.Arg157Cys	p.R157C	ENST00000253063	NM_031459.4	157	Cgc/Tgc																																																																														
STK40	83931	MSKCC	GRCh37	1	36807516	36807516	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	196	442	0	ENST00000373129.3:c.1148T>A	p.Leu383Gln	p.L383Q	ENST00000373129	NM_032017.1	383	cTg/cAg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248285	59248285	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	25	48	0	ENST00000371222.2:c.458del	p.Gly153AlafsTer29	p.G153Afs*29	ENST00000371222	NM_002228.3	153	gGc/gc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193117093	193117093	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	108	223	0	ENST00000367435.3:c.826G>A	p.Val276Met	p.V276M	ENST00000367435	NM_024529.4	276	Gtg/Atg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981881	201981881	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	205	456	0	ENST00000359651.3:c.592A>G	p.Thr198Ala	p.T198A	ENST00000359651		198	Acc/Gcc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649643	206649643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	208	403	1	ENST00000367120.3:c.478G>A	p.Ala160Thr	p.A160T	ENST00000367120	NM_014002.3	160	Gct/Act																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771485	112771485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	175	385	0	ENST00000369452.4:c.1658T>C	p.Leu553Pro	p.L553P	ENST00000369452	NM_007373.3	553	cTc/cCc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	211	378	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	155	331	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137271	64137271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	218	407	0	ENST00000334205.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000334205	NM_003942.2	568	aCg/aTg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196695	67196696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	129	262	0	ENST00000312629.5:c.230dupG	p.Tyr78LeufsTer42	p.Y78Lfs*42	ENST00000312629	NM_003952.2	75	aag/aaGg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948808	71948808	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150912074		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	219	527	0	ENST00000298229.2:c.3520C>T	p.Arg1174Trp	p.R1174W	ENST00000298229	NM_001567.3	1174	Cgg/Tgg																																																																														
EED	8726	MSKCC	GRCh37	11	85989481	85989481	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	126	296	0	ENST00000263360.6:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000263360	NM_003797.3	414	Cga/Tga																																																																														
SESN3	143686	MSKCC	GRCh37	11	94918571	94918571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	138	349	0	ENST00000536441.1:c.611C>T	p.Ala204Val	p.A204V	ENST00000536441	NM_144665.3	204	gCa/gTa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402268	402268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	53	474	0	ENST00000399788.2:c.4523G>A	p.Arg1508Gln	p.R1508Q	ENST00000399788	NM_001042603.1	1508	cGg/cAg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	291	264	8	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	287	356	5	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	166	267	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378676	25378676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	73	255	0	ENST00000256078.4:c.322G>A	p.Asp108Asn	p.D108N	ENST00000256078	NM_033360.2	108	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416504	49416504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	181	360	2	ENST00000301067.7:c.16207C>T	p.Arg5403Cys	p.R5403C	ENST00000301067	NM_003482.3	5403	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420075	49420075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	194	352	0	ENST00000301067.7:c.15674G>A	p.Arg5225His	p.R5225H	ENST00000301067	NM_003482.3	5225	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433394	49433394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	411	472	2	ENST00000301067.7:c.8053C>T	p.Arg2685Ter	p.R2685*	ENST00000301067	NM_003482.3	2685	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438211	49438211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	51	435	0	ENST00000301067.7:c.5058delA	p.Lys1686AsnfsTer36	p.K1686Nfs*36	ENST00000301067	NM_003482.3	1686	aaA/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	290	467	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447799	49447799	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	172	382	0	ENST00000301067.7:c.635T>G	p.Leu212Arg	p.L212R	ENST00000301067	NM_003482.3	212	cTg/cGg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487334	56487334	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	95	186	0	ENST00000267101.3:c.1480G>A	p.Val494Met	p.V494M	ENST00000267101	NM_001982.3	494	Gtg/Atg																																																																														
RB1	5925	MSKCC	GRCh37	13	48878069	48878069	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	74	173	0	ENST00000267163.4:c.25del	p.Thr9ArgfsTer56	p.T9Rfs*56	ENST00000267163	NM_000321.2	7	cgA/cg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	338208	338208	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	272	459	0	ENST00000262320.3:c.2503del	p.Val835TrpfsTer103	p.V835Wfs*103	ENST00000262320	NM_003502.3	835	Gtg/tg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133797	2133797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	120	379	0	ENST00000219476.3:c.3985C>T	p.Arg1329Cys	p.R1329C	ENST00000219476	NM_000548.3	1329	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781261	3781261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	271	535	0	ENST00000262367.5:c.5104C>T	p.Arg1702Cys	p.R1702C	ENST00000262367	NM_004380.2	1702	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781354	3781354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	221	509	0	ENST00000262367.5:c.5011G>A	p.Ala1671Thr	p.A1671T	ENST00000262367	NM_004380.2	1671	Gcc/Acc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	166	334	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645493	67645493	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	133	185	0	ENST00000264010.4:c.758A>C	p.Lys253Thr	p.K253T	ENST00000264010	NM_006565.3	253	aAg/aCg																																																																														
CDH1	999	MSKCC	GRCh37	16	68855967	68855967	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	31	452	1	ENST00000261769.5:c.1779del	p.Ile594TyrfsTer19	p.I594Yfs*19	ENST00000261769	NM_004360.3	592	gCc/gc																																																																														
CDH1	999	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	207	447	0	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	143	244	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346439	89346439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	212	461	0	ENST00000301030.4:c.6511C>T	p.Pro2171Ser	p.P2171S	ENST00000301030	NM_001256183.1	2171	Ccc/Tcc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349640	89349641	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	191	487	5	ENST00000301030.4:c.3309dupA	p.Asp1104ArgfsTer2	p.D1104Rfs*2	ENST00000301030	NM_001256183.1	1103	-/A																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805351	89805351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149851163		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	152	330	0	ENST00000389301.3:c.4199G>A	p.Arg1400His	p.R1400H	ENST00000389301	NM_000135.2	1400	cGt/cAt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979619	7979619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140306846		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	131	344	0	ENST00000319144.4:c.1406G>A	p.Arg469Gln	p.R469Q	ENST00000319144	NM_001139.2	469	cGg/cAg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024503	16024503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	173	284	0	ENST00000268712.3:c.1715G>A	p.Arg572Gln	p.R572Q	ENST00000268712	NM_006311.3	572	cGa/cAa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30326004	30326005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769517721		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	108	262	0	ENST00000322652.5:c.2208dup	p.Gln737ThrfsTer20	p.Q737Tfs*20	ENST00000322652	NM_015355.2	734	-/A																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881106	37881106	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	37	369	2	ENST00000269571.5:c.2438del	p.Asn813ThrfsTer11	p.N813Tfs*11	ENST00000269571		812	gAa/ga																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462589	40462589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	209	404	0	ENST00000345506.4:c.2287C>T	p.His763Tyr	p.H763Y	ENST00000345506	NM_003152.3	763	Cac/Tac																																																																														
EZH1	2145	MSKCC	GRCh37	17	40870544	40870544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	264	455	1	ENST00000428826.2:c.859C>T	p.Arg287Trp	p.R287W	ENST00000428826		287	Cgg/Tgg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805624	46805624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	44	437	0	ENST00000290295.7:c.332C>T	p.Ala111Val	p.A111V	ENST00000290295	NM_006361.5	111	gCg/gTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	415	443	0	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	216	426	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	329	335	1	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617690	39617690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141329274		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	114	261	1	ENST00000262039.4:c.1874C>T	p.Thr625Met	p.T625M	ENST00000262039	NM_002647.2	625	aCg/aTg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39629506	39629506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	115	263	0	ENST00000262039.4:c.2200G>A	p.Val734Met	p.V734M	ENST00000262039	NM_002647.2	734	Gtg/Atg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1650237	1650237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	187	387	1	ENST00000344749.5:c.11C>T	p.Pro4Leu	p.P4L	ENST00000344749	NM_001136139.2	4	cCg/cTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226943	2226943	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150855728		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	198	331	1	ENST00000398665.3:c.4423G>A	p.Ala1475Thr	p.A1475T	ENST00000398665	NM_032482.2	1475	Gcg/Acg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	184	368	3	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
INSR	3643	MSKCC	GRCh37	19	7184534	7184534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	221	310	3	ENST00000302850.5:c.767G>A	p.Arg256His	p.R256H	ENST00000302850	NM_000208.2	256	cGc/cAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610285	10610285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	243	478	0	ENST00000171111.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000171111	NM_203500.1	142	aCg/aTg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11022965	11022965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	191	329	1	ENST00000327064.4:c.664G>A	p.Ala222Thr	p.A222T	ENST00000327064	NM_199141.1	222	Gct/Act																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098540	11098540	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	156	361	0	ENST00000344626.4:c.1062delC	p.Ile355SerfsTer56	p.I355Sfs*56	ENST00000344626	NM_003072.3	353	aCc/ac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145752	11145752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	210	454	0	ENST00000344626.4:c.4114C>T	p.Arg1372Cys	p.R1372C	ENST00000344626	NM_003072.3	1372	Cgc/Tgc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627670	14627670	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	43	345	0	ENST00000254322.2:c.400T>G	p.Phe134Val	p.F134V	ENST00000254322	NM_006145.1	134	Ttc/Gtc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272116	15272116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	219	429	2	ENST00000263388.2:c.6323C>T	p.Pro2108Leu	p.P2108L	ENST00000263388	NM_000435.2	2108	cCg/cTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	199	485	5	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15278068	15278068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	180	351	0	ENST00000263388.2:c.5354G>A	p.Arg1785His	p.R1785H	ENST00000263388	NM_000435.2	1785	cGt/cAt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366237	15366237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	187	451	1	ENST00000263377.2:c.1918C>T	p.Arg640Trp	p.R640W	ENST00000263377	NM_058243.2	640	Cgg/Tgg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18961589	18961589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	36	332	0	ENST00000262803.5:c.722G>T	p.Trp241Leu	p.W241L	ENST00000262803	NM_002911.3	241	tGg/tTg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19261529	19261529	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	108	389	0	ENST00000162023.5:c.16del	p.Ile6SerfsTer14	p.I6Sfs*14	ENST00000162023		6	Atc/tc																																																																														
AXL	558	MSKCC	GRCh37	19	41744449	41744449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143593613		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	40	448	0	ENST00000301178.4:c.1069C>T	p.Arg357Trp	p.R357W	ENST00000301178	NM_021913.4	357	Cgg/Tgg																																																																														
AXL	558	MSKCC	GRCh37	19	41763500	41763500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	173	342	0	ENST00000301178.4:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000301178	NM_021913.4	767	Cgc/Tgc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	228	476	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867298	45867298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	199	411	0	ENST00000391945.4:c.895C>T	p.Arg299Trp	p.R299W	ENST00000391945	NM_000400.3	299	Cgg/Tgg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	165	469	3	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972584	25972584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	103	238	0	ENST00000435504.4:c.1841G>A	p.Arg614Gln	p.R614Q	ENST00000435504		614	cGa/cAa																																																																														
ALK	238	MSKCC	GRCh37	2	29606696	29606696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	132	352	0	ENST00000389048.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000389048	NM_004304.4	395	cGt/cAt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095568	178095568	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	28	243	0	ENST00000397062.3:c.1763A>G	p.Asp588Gly	p.D588G	ENST00000397062	NM_006164.4	588	gAt/gGt																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	122	261	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537919	212537919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	183	318	0	ENST00000342788.4:c.1686G>A	p.Met562Ile	p.M562I	ENST00000342788	NM_005235.2	562	atG/atA																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660205	227660205	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	202	456	0	ENST00000305123.5:c.3250A>C	p.Ser1084Arg	p.S1084R	ENST00000305123	NM_005544.2	1084	Agt/Cgt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386391	31386391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	163	328	0	ENST00000328111.2:c.1616G>A	p.Arg539Gln	p.R539Q	ENST00000328111	NM_006892.3	539	cGg/cAg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845259	42845259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	28	271	0	ENST00000398585.3:c.1003G>A	p.Val335Met	p.V335M	ENST00000398585	NM_001135099.1	335	Gtg/Atg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45649958	45649958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	177	314	0	ENST00000407780.3:c.877A>G	p.Ser293Gly	p.S293G	ENST00000407780	NM_001283052.1	293	Agt/Ggt																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22221706	22221706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	40	73	0	ENST00000215832.6:c.25G>C	p.Ala9Pro	p.A9P	ENST00000215832	NM_002745.4	9	Gcg/Ccg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175868	24175868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	132	366	0	ENST00000263121.7:c.1096C>T	p.Arg366Cys	p.R366C	ENST00000263121	NM_003073.3	366	Cgc/Tgc																																																																														
VHL	7428	MSKCC	GRCh37	3	10191636	10191636	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138780791		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	187	342	0	ENST00000256474.2:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000256474	NM_000551.3	210	cGg/cAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713715	30713715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	151	316	0	ENST00000359013.4:c.1115T>C	p.Leu372Pro	p.L372P	ENST00000359013	NM_001024847.2	372	cTg/cCg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275192	41275192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	99	235	1	ENST00000349496.5:c.1358G>A	p.Arg453Gln	p.R453Q	ENST00000349496	NM_001904.3	453	cGg/cAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165918	47165918	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	116	313	1	ENST00000409792.3:c.208C>T	p.Arg70Ter	p.R70*	ENST00000409792	NM_014159.6	70	Cga/Tga																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940589	49940590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	186	363	0	ENST00000296474.3:c.453dup	p.Gly152ArgfsTer18	p.G152Rfs*18	ENST00000296474	NM_002447.2	151	-/A																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651496	52651496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	37	416	1	ENST00000394830.3:c.1600C>T	p.Arg534Ter	p.R534*	ENST00000394830	NM_018313.4	534	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391020	89391020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	213	377	0	ENST00000336596.2:c.1086A>G	p.Ile362Met	p.I362M	ENST00000336596	NM_005233.5	362	atA/atG																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806153	1806153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	235	455	0	ENST00000260795.2:c.1172C>T	p.Ala391Val	p.A391V	ENST00000260795		391	gCg/gTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	145	318	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	376	386	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931452	131931453	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	123	318	0	ENST00000265335.6:c.2164_2165del	p.Lys722GlyfsTer5	p.K722Gfs*5	ENST00000265335		719	ctAAaa/ctaa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514337	149514337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	132	328	0	ENST00000261799.4:c.607G>A	p.Ala203Thr	p.A203T	ENST00000261799	NM_002609.3	203	Gcc/Acc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031990	26031990	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	71	256	0	ENST00000244661.2:c.299A>G	p.Tyr100Cys	p.Y100C	ENST00000244661	NM_003537.3	100	tAc/tGc																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045802	26045802	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	68	350	0	ENST00000540144.1:c.164A>G	p.Tyr55Cys	p.Y55C	ENST00000540144	NM_003531.2	55	tAc/tGc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805363	32805363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	186	411	0	ENST00000374899.4:c.559del	p.His187MetfsTer63	p.H187Mfs*63	ENST00000374899	NM_018833.2	187	Cat/at																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805787	32805788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1174402903		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	199	443	0	ENST00000374899.4:c.223dup	p.Leu75ProfsTer92	p.L75Pfs*92	ENST00000374899	NM_018833.2	75	ctg/cCtg																																																																														
CCND3	896	MSKCC	GRCh37	6	41904337	41904337	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	83	323	0	ENST00000372991.4:c.671A>C	p.Glu224Ala	p.E224A	ENST00000372991	NM_001760.3	224	gAg/gCg																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983058	149983058	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	151	365	0	ENST00000253339.5:c.3200del	p.Asn1067MetfsTer61	p.N1067Mfs*61	ENST00000253339		1067	aAt/at																																																																														
MET	4233	MSKCC	GRCh37	7	116414571	116414571	+	intron_variant	Intron	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	33	428	1	ENST00000397752.3:c.3029-364C>T		p.*1010*	ENST00000397752	NM_000245.2																																																																																
MET	4233	MSKCC	GRCh37	7	116414767	116414768	+	intron_variant	Intron	INS	-	-	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	153	386	0	ENST00000397752.3:c.3029-164dup		p.*1010*	ENST00000397752	NM_000245.2																																																																																
FGFR1	2260	MSKCC	GRCh37	8	38272337	38272337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	188	357	1	ENST00000425967.3:c.2030G>A	p.Arg677Gln	p.R677Q	ENST00000425967	NM_001174067.1	677	cGg/cAg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38279429	38279429	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	185	379	0	ENST00000425967.3:c.1060A>G	p.Met354Val	p.M354V	ENST00000425967	NM_001174067.1	354	Atg/Gtg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	238	467	1	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738660	145738660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	350	367	2	ENST00000428558.2:c.2404G>A	p.Val802Met	p.V802M	ENST00000428558	NM_004260.3	802	Gtg/Atg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742150	145742150	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	129	261	0	ENST00000428558.2:c.355-2A>C		p.X119_splice	ENST00000428558	NM_004260.3	119																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8504293	8504293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	94	324	0	ENST00000356435.5:c.1790C>T	p.Thr597Ile	p.T597I	ENST00000356435		597	aCt/aTt																																																																														
ABL1	25	MSKCC	GRCh37	9	133760378	133760378	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	169	407	1	ENST00000318560.5:c.2705del	p.Pro902HisfsTer40	p.P902Hfs*40	ENST00000318560	NM_005157.4	901	Ccc/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399976	139399976	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200495793		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	223	468	1	ENST00000277541.6:c.4372G>A	p.Ala1458Thr	p.A1458T	ENST00000277541	NM_017617.3	1458	Gcg/Acg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1315005	1315005	+	downstream_gene_variant	3'Flank	SNP	G	G	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	170	342	0				ENST00000381566																																																																																	
AR	367	MSKCC	GRCh37	X	66765149	66765151	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-	rs764402637		P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	16	123	2	ENST00000374690.3:c.170_172del	p.Leu57del	p.L57del	ENST00000374690	NM_000044.3	54	tTGCtg/ttg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220539	123220539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	159	209	0	ENST00000218089.9:c.3196C>T	p.Arg1066Trp	p.R1066W	ENST00000218089	NM_001042749.1	1066	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	83	553	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0026715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	82	480	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	68	435	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	68	435	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748610	40748610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	55	480	0	ENST00000373198.4:c.2906G>A	p.Gly969Glu	p.G969E	ENST00000373198	NM_133170.3	969	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	68	435	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526735	106526735	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0026715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	54	394	0	ENST00000359195.3:c.3028C>T	p.Gln1010Ter	p.Q1010*	ENST00000359195	NM_002649.2	1010	Cag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681009	37681009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	103	618	0	ENST00000447079.4:c.3178C>T	p.Pro1060Ser	p.P1060S	ENST00000447079	NM_015083.1	1060	Cca/Tca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	96	436	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	214	629	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561564	9561564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	106	432	0	ENST00000353224.5:c.218G>A	p.Gly73Glu	p.G73E	ENST00000353224	NM_177990.2	73	gGa/gAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444333	50444333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	150	367	1	ENST00000331340.3:c.263C>T	p.Ser88Leu	p.S88L	ENST00000331340	NM_006060.4	88	tCg/tTg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	190	392	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552823	106552823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	173	666	0	ENST00000369096.4:c.788G>A	p.Gly263Glu	p.G263E	ENST00000369096	NM_001198.3	263	gGa/gAa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	275	619	2	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538263	9538263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	163	538	0	ENST00000353224.5:c.1735G>A	p.Asp579Asn	p.D579N	ENST00000353224	NM_177990.2	579	Gat/Aat																																																																														
TET2	54790	MSKCC	GRCh37	4	106156354	106156354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	75	362	0	ENST00000380013.4:c.1255C>T	p.Pro419Ser	p.P419S	ENST00000380013	NM_001127208.2	419	Cct/Tct																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	190	661	1	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857061	9857061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	89	300	1	ENST00000330684.3:c.4340C>T	p.Ser1447Phe	p.S1447F	ENST00000330684	NM_001134407.1	1447	tCc/tTc																																																																														
MPL	4352	MSKCC	GRCh37	1	43803598	43803598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	159	522	0	ENST00000372470.3:c.79G>A	p.Asp27Asn	p.D27N	ENST00000372470	NM_005373.2	27	Gat/Aat																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275812	38275812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	114	592	0	ENST00000425967.3:c.1457C>T	p.Pro486Leu	p.P486L	ENST00000425967	NM_001174067.1	486	cCc/cTc																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699486	117699486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	209	394	0	ENST00000369458.3:c.155G>A	p.Gly52Glu	p.G52E	ENST00000369458	NM_024626.3	52	gGa/gAa																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206650090	206650090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	45	638	0	ENST00000367120.3:c.610C>T	p.Leu204Phe	p.L204F	ENST00000367120	NM_014002.3	204	Ctc/Ttc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263992	104263992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	30	336	2	ENST00000369902.3:c.83C>T	p.Ser28Leu	p.S28L	ENST00000369902	NM_016169.3	28	tCg/tTg																																																																														
CBL	867	MSKCC	GRCh37	11	119155956	119155956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	136	640	0	ENST00000264033.4:c.1621G>A	p.Asp541Asn	p.D541N	ENST00000264033	NM_005188.3	541	Gat/Aat																																																																														
RAD52	5893	MSKCC	GRCh37	12	1039250	1039250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	97	568	2	ENST00000358495.3:c.247G>A	p.Gly83Ser	p.G83S	ENST00000358495	NM_134424.2	83	Ggc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446049	49446049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	144	811	2	ENST00000301067.7:c.1417G>A	p.Glu473Lys	p.E473K	ENST00000301067	NM_003482.3	473	Gaa/Aaa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861939	57861939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	150	527	2	ENST00000228682.2:c.1240C>T	p.Pro414Ser	p.P414S	ENST00000228682	NM_005269.2	414	Ccc/Tcc																																																																														
POLE	5426	MSKCC	GRCh37	12	133257841	133257842	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTG			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	128	402	0	ENST00000320574.5:c.83_86dup	p.Ala31PhefsTer14	p.A31Ffs*14	ENST00000320574	NM_006231.2	29	gtt/gtCAGTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28624325	28624325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	159	484	0	ENST00000241453.7:c.649G>A	p.Glu217Lys	p.E217K	ENST00000241453	NM_004119.2	217	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	42054042	42054042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	154	439	1	ENST00000219905.7:c.7504C>T	p.Leu2502Phe	p.L2502F	ENST00000219905	NM_001164273.1	2502	Ctt/Ttt																																																																														
BLM	641	MSKCC	GRCh37	15	91303915	91303915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	229	548	0	ENST00000355112.3:c.1312C>T	p.Pro438Ser	p.P438S	ENST00000355112	NM_000057.2	438	Cct/Tct																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198263254	198263254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	175	534	0	ENST00000335508.6:c.3065C>T	p.Pro1022Leu	p.P1022L	ENST00000335508	NM_012433.2	1022	cCc/cTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525099	9525099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	176	528	0	ENST00000353224.5:c.1786G>C	p.Glu596Gln	p.E596Q	ENST00000353224	NM_177990.2	596	Gag/Cag																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42840355	42840355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	158	533	1	ENST00000398585.3:c.1393G>A	p.Gly465Ser	p.G465S	ENST00000398585	NM_001135099.1	465	Ggc/Agc																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114085	73114085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	85	247	0	ENST00000356692.5:c.721G>A	p.Glu241Lys	p.E241K	ENST00000356692		241	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540803	187540803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	100	337	0	ENST00000441802.2:c.6937G>A	p.Glu2313Lys	p.E2313K	ENST00000441802	NM_005245.3	2313	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295259	1295259	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	97	466	0				ENST00000310581	NM_198253.2																																																																																
E2F3	1871	MSKCC	GRCh37	6	20490632	20490632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	179	510	0	ENST00000346618.3:c.1369C>T	p.Pro457Ser	p.P457S	ENST00000346618	NM_001949.4	457	Cca/Tca																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797859	32797859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	93	348	0	ENST00000374899.4:c.1643C>T	p.Ser548Leu	p.S548L	ENST00000374899	NM_018833.2	548	tCa/tTa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287810	33287811	+	missense_variant	Missense_Mutation	DNP	GT	GT	AG			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	179	726	0	ENST00000374542.5:c.1442_1443delinsCT	p.Asp481Ala	p.D481A	ENST00000374542	NM_001141970.1	481	gAC/gCT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117730789	117730789	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	56	536	0	ENST00000368508.3:c.245T>C	p.Val82Ala	p.V82A	ENST00000368508	NM_002944.2	82	gTt/gCt																																																																														
BRAF	673	MSKCC	GRCh37	7	140477855	140477856	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	226	610	1	ENST00000288602.6:c.1452_1453delinsAA	p.Met484_Leu485delinsIleMet	p.M484_L485delinsIM	ENST00000288602	NM_004333.4	484	atGTtg/atAAtg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879260	151879260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	185	511	1	ENST00000262189.6:c.5685G>A	p.Met1895Ile	p.M1895I	ENST00000262189	NM_170606.2	1895	atG/atA																																																																														
TEK	7010	MSKCC	GRCh37	9	27203019	27203019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	248	592	1	ENST00000380036.4:c.2111C>T	p.Pro704Leu	p.P704L	ENST00000380036	NM_000459.3	704	cCt/cTt																																																																														
TEK	7010	MSKCC	GRCh37	9	27204924	27204924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	154	412	0	ENST00000380036.4:c.2225G>A	p.Gly742Glu	p.G742E	ENST00000380036	NM_000459.3	742	gGa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	38	425	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	102	588	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	88	448	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	88	448	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
HRAS	3265	MSKCC	GRCh37	11	533881	533881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	84	640	0	ENST00000311189.7:c.175G>A	p.Ala59Thr	p.A59T	ENST00000311189		59	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	87	572	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	88	448	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271784	15271784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	77	666	0	ENST00000263388.2:c.6655G>A	p.Glu2219Lys	p.E2219K	ENST00000263388	NM_000435.2	2219	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212706	36212712	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGT	GGTGAGT	-			P-0026868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	55	532	0	ENST00000222270.7:c.2457+1_2457+7del		p.X819_splice	ENST00000222270	NM_014727.1	819																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41306554	41306554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	62	545	1	ENST00000373198.4:c.1105G>A	p.Gly369Ser	p.G369S	ENST00000373198	NM_133170.3	369	Ggt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	136	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	86	487	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	86	487	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	86	487	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	139	585	1	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	49	504	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	49	504	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	323	376	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	134	372	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	473	497	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724308	117724308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	164	402	0	ENST00000368508.3:c.571C>T	p.His191Tyr	p.H191Y	ENST00000368508	NM_002944.2	191	Cat/Tat																																																																														
RB1	5925	MSKCC	GRCh37	13	49033970	49033970	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	383	323	0	ENST00000267163.4:c.2106+1G>A		p.X702_splice	ENST00000267163	NM_000321.2	702																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94066699	94066699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	143	401	0	ENST00000369303.4:c.1060C>T	p.Pro354Ser	p.P354S	ENST00000369303	NM_004440.3	354	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	125	322	1				ENST00000310581	NM_198253.2																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15292391	15292391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	164	528	0	ENST00000263388.2:c.2788C>T	p.Pro930Ser	p.P930S	ENST00000263388	NM_000435.2	930	Ccc/Tcc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660731	227660731	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	397	532	0	ENST00000305123.5:c.2724C>G	p.Tyr908Ter	p.Y908*	ENST00000305123	NM_005544.2	908	taC/taG																																																																														
MPL	4352	MSKCC	GRCh37	1	43803776	43803776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	144	455	3	ENST00000372470.3:c.86C>T	p.Ser29Phe	p.S29F	ENST00000372470	NM_005373.2	29	tCc/tTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459206	120459207	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	313	392	0	ENST00000256646.2:c.6138_6139delinsGT	p.Arg2047Trp	p.R2047W	ENST00000256646	NM_024408.3	2046	ccCCgg/ccGTgg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843731	156843731	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	499	766	0	ENST00000524377.1:c.1157A>G	p.Asn386Ser	p.N386S	ENST00000524377	NM_002529.3	386	aAc/aGc																																																																														
SDHC	6391	MSKCC	GRCh37	1	161326621	161326622	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	424	576	0	ENST00000367975.2:c.396_397delinsTT	p.Arg133Ter	p.R133*	ENST00000367975	NM_003001.3	132	atCCga/atTTga																																																																														
PARP1	142	MSKCC	GRCh37	1	226567274	226567274	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	312	405	0	ENST00000366794.5:c.1612G>A	p.Gly538Arg	p.G538R	ENST00000366794	NM_001618.3	538	Gga/Aga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18473954	18473954	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	109	269	0	ENST00000266497.5:c.1196G>A	p.Trp399Ter	p.W399*	ENST00000266497		399	tGg/tAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491477	18491477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	150	258	0	ENST00000266497.5:c.1390G>A	p.Gly464Arg	p.G464R	ENST00000266497		464	Gga/Aga																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895664	28895664	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	36	549	0	ENST00000282397.4:c.3110A>T	p.Lys1037Met	p.K1037M	ENST00000282397	NM_002019.4	1037	aAg/aTg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246507	105246507	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	245	545	0	ENST00000349310.3:c.93T>G	p.Asn31Lys	p.N31K	ENST00000349310	NM_001014432.1	31	aaT/aaG																																																																														
FANCA	2175	MSKCC	GRCh37	16	89862376	89862376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	263	520	0	ENST00000389301.3:c.944C>T	p.Pro315Leu	p.P315L	ENST00000389301	NM_000135.2	315	cCt/cTt																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110558	4110558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	226	529	1	ENST00000262948.5:c.399C>A	p.Phe133Leu	p.F133L	ENST00000262948	NM_030662.3	133	ttC/ttA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210905	36210907	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	TT			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	224	660	2	ENST00000222270.7:c.656_658delinsTT	p.Ser219PhefsTer20	p.S219Ffs*20	ENST00000222270	NM_014727.1	219	tCTCgg/tTTgg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560838	9560838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	150	337	0	ENST00000353224.5:c.944C>T	p.Ser315Phe	p.S315F	ENST00000353224	NM_177990.2	315	tCc/tTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022245	31022245	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	94	212	0	ENST00000375687.4:c.1730C>G	p.Ser577Ter	p.S577*	ENST00000375687	NM_015338.5	577	tCa/tGa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155303	185155303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	172	370	0	ENST00000265026.3:c.544G>A	p.Val182Ile	p.V182I	ENST00000265026	NM_004721.4	182	Gtc/Atc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55140785	55140785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	158	328	0	ENST00000257290.5:c.1646G>A	p.Trp549Ter	p.W549*	ENST00000257290	NM_006206.4	549	tGg/tAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231661	66231661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	105	311	0	ENST00000273854.3:c.2039T>C	p.Val680Ala	p.V680A	ENST00000273854	NM_004439.5	680	gTt/gCt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131940668	131940668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	195	358	0	ENST00000265335.6:c.2695C>T	p.Gln899Ter	p.Q899*	ENST00000265335		899	Cag/Tag																																																																														
PIM1	5292	MSKCC	GRCh37	6	37139045	37139045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	345	466	0	ENST00000373509.5:c.385C>T	p.Leu129Phe	p.L129F	ENST00000373509	NM_002648.3	129	Ctc/Ttc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976777	2976777	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	232	549	0	ENST00000396946.4:c.1235A>C	p.Glu412Ala	p.E412A	ENST00000396946	NM_032415.4	412	gAg/gCg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55272960	55272960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	178	354	0	ENST00000275493.2:c.3283C>T	p.Gln1095Ter	p.Q1095*	ENST00000275493	NM_005228.3	1095	Cag/Tag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737780	145737780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	402	547	0	ENST00000428558.2:c.3050G>A	p.Arg1017Lys	p.R1017K	ENST00000428558	NM_004260.3	1017	aGg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	118	431	1				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	685	604	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546761	9546761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	95	352	0	ENST00000353224.5:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000353224	NM_177990.2	421	Gac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105955	27105955	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	297	482	0	ENST00000324856.7:c.5566C>T	p.Gln1856Ter	p.Q1856*	ENST00000324856	NM_006015.4	1856	Cag/Tag																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495442	149495442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	253	891	1	ENST00000261799.4:c.3205G>A	p.Glu1069Lys	p.E1069K	ENST00000261799	NM_002609.3	1069	Gaa/Aaa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888120	81888120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199638859		P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	229	627	0	ENST00000359376.3:c.265C>T	p.Arg89Cys	p.R89C	ENST00000359376	NM_002661.3	89	Cgc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566709	212566709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	198	345	1	ENST00000342788.4:c.1472G>A	p.Arg491Lys	p.R491K	ENST00000342788	NM_005235.2	491	aGa/aAa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	192	572	6	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																														
MGA	23269	MSKCC	GRCh37	15	42021422	42021422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	281	498	0	ENST00000219905.7:c.3718C>T	p.Arg1240Ter	p.R1240*	ENST00000219905	NM_001164273.1	1240	Cga/Tga																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546799	9546799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	119	428	0	ENST00000353224.5:c.1223C>T	p.Ser408Phe	p.S408F	ENST00000353224	NM_177990.2	408	tCc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612176	189612176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	243	560	1	ENST00000264731.3:c.1928G>A	p.Arg643Gln	p.R643Q	ENST00000264731	NM_003722.4	643	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710984	117710984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	142	323	0	ENST00000368508.3:c.1288G>A	p.Gly430Ser	p.G430S	ENST00000368508	NM_002944.2	430	Ggc/Agc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521456	8521456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	326	682	0	ENST00000356435.5:c.782G>A	p.Gly261Glu	p.G261E	ENST00000356435		261	gGg/gAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631443	117631443	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	158	328	0	ENST00000368508.3:c.6235G>A	p.Asp2079Asn	p.D2079N	ENST00000368508	NM_002944.2	2079	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	118	394	0				ENST00000310581	NM_198253.2																																																																																
ALK	238	MSKCC	GRCh37	2	29754793	29754793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	169	455	1	ENST00000389048.3:c.1142C>T	p.Pro381Leu	p.P381L	ENST00000389048	NM_004304.4	381	cCa/cTa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932690	49932690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	228	753	0	ENST00000296474.3:c.3181G>A	p.Asp1061Asn	p.D1061N	ENST00000296474	NM_002447.2	1061	Gac/Aac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188626	32188626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	172	731	0	ENST00000375023.3:c.829C>T	p.Pro277Ser	p.P277S	ENST00000375023	NM_004557.3	277	Cca/Tca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8338947	8338947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	190	565	0	ENST00000356435.5:c.5354G>A	p.Arg1785Lys	p.R1785K	ENST00000356435		1785	aGg/aAg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46733270	46733270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	438	529	0	ENST00000371975.4:c.1031C>T	p.Ser344Phe	p.S344F	ENST00000371975	NM_003579.3	344	tCc/tTc																																																																														
JUN	3725	MSKCC	GRCh37	1	59248105	59248105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	162	219	0	ENST00000371222.2:c.638A>G	p.Gln213Arg	p.Q213R	ENST00000371222	NM_002228.3	213	cAg/cGg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115272907	115272907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	544	687	1	ENST00000438362.2:c.1466C>T	p.Thr489Ile	p.T489I	ENST00000438362	NM_001242891.1	489	aCc/aTc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651136	206651136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	211	656	1	ENST00000367120.3:c.746C>T	p.Ala249Val	p.A249V	ENST00000367120	NM_014002.3	249	gCc/gTc																																																																														
TET1	80312	MSKCC	GRCh37	10	70333429	70333429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	258	689	0	ENST00000373644.4:c.1334C>A	p.Ala445Asp	p.A445D	ENST00000373644	NM_030625.2	445	gCt/gAt																																																																														
ATM	472	MSKCC	GRCh37	11	108164119	108164119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	211	411	0	ENST00000278616.4:c.4691C>T	p.Pro1564Leu	p.P1564L	ENST00000278616	NM_000051.3	1564	cCt/cTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435418	18435418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	162	384	0	ENST00000266497.5:c.403G>A	p.Gly135Ser	p.G135S	ENST00000266497		135	Ggt/Agt																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945097	31945097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	169	570	0	ENST00000340398.3:c.4G>A	p.Ala2Thr	p.A2T	ENST00000340398	NM_001013699.2	2	Gcc/Acc																																																																														
POLE	5426	MSKCC	GRCh37	12	133248851	133248851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	226	713	2	ENST00000320574.5:c.1744C>A	p.Leu582Ile	p.L582I	ENST00000320574	NM_006231.2	582	Ctt/Att																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913308	32913308	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	248	542	0	ENST00000380152.3:c.4816T>A	p.Ser1606Thr	p.S1606T	ENST00000380152		1606	Tct/Act																																																																														
RB1	5925	MSKCC	GRCh37	13	48936989	48936989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	263	662	1	ENST00000267163.4:c.757C>T	p.Pro253Ser	p.P253S	ENST00000267163	NM_000321.2	253	Ccc/Tcc																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348713	11348714	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	251	668	1	ENST00000332029.2:c.622_623delinsTT	p.Pro208Phe	p.P208F	ENST00000332029	NM_003745.1	208	CCc/TTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829881	72829881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	250	706	0	ENST00000268489.5:c.6700C>T	p.Pro2234Ser	p.P2234S	ENST00000268489	NM_006885.3	2234	Cca/Tca																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686929	37686929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	203	575	0	ENST00000447079.4:c.3833C>T	p.Pro1278Leu	p.P1278L	ENST00000447079	NM_015083.1	1278	cCa/cTa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436035	56436035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	125	399	0	ENST00000407977.2:c.1102C>G	p.Arg368Gly	p.R368G	ENST00000407977		368	Cgg/Ggg																																																																														
CALR	811	MSKCC	GRCh37	19	13050953	13050953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	199	505	0	ENST00000316448.5:c.484C>T	p.Arg162Cys	p.R162C	ENST00000316448	NM_004343.3	162	Cgt/Tgt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214707	36214707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	110	555	1	ENST00000222270.7:c.3133C>T	p.Pro1045Ser	p.P1045S	ENST00000222270	NM_014727.1	1045	Cca/Tca																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856035	45856035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	153	700	0	ENST00000391945.4:c.1871C>G	p.Pro624Arg	p.P624R	ENST00000391945	NM_000400.3	624	cCc/cGc																																																																														
CASP8	841	MSKCC	GRCh37	2	202150027	202150027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	259	611	0	ENST00000358485.4:c.1468G>A	p.Glu490Lys	p.E490K	ENST00000358485	NM_001080125.1	490	Gag/Aag																																																																														
TOP1	7150	MSKCC	GRCh37	20	39721132	39721132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	262	580	0	ENST00000361337.2:c.635C>A	p.Pro212His	p.P212H	ENST00000361337	NM_003286.2	212	cCt/cAt																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656794	45656794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	118	683	0	ENST00000407780.3:c.362G>A	p.Gly121Glu	p.G121E	ENST00000407780	NM_001283052.1	121	gGa/gAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164498	47164498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	144	395	0	ENST00000409792.3:c.1628C>T	p.Ser543Leu	p.S543L	ENST00000409792	NM_014159.6	543	tCa/tTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391196	89391196	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	203	495	0	ENST00000336596.2:c.1262C>G	p.Pro421Arg	p.P421R	ENST00000336596	NM_005233.5	421	cCa/cGa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1920106	1920106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	266	690	0	ENST00000382891.5:c.1166C>T	p.Ser389Phe	p.S389F	ENST00000382891	NM_133335.3	389	tCt/tTt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748159	41748159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	135	367	0	ENST00000226382.2:c.610C>T	p.Pro204Ser	p.P204S	ENST00000226382	NM_003924.3	204	Ccc/Tcc																																																																														
KIT	3815	MSKCC	GRCh37	4	55597574	55597574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	239	494	0	ENST00000288135.5:c.2222C>T	p.Ser741Phe	p.S741F	ENST00000288135	NM_000222.2	741	tCt/tTt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176662858	176662858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	227	549	0	ENST00000439151.2:c.3833G>C	p.Ser1278Thr	p.S1278T	ENST00000439151	NM_022455.4	1278	aGc/aCc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180039533	180039534	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	175	740	2	ENST00000261937.6:c.3509_3510delinsAA	p.Gly1170Glu	p.G1170E	ENST00000261937	NM_182925.4	1170	gGG/gAA																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166443	32166443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	269	731	1	ENST00000375023.3:c.4600G>A	p.Gly1534Arg	p.G1534R	ENST00000375023	NM_004557.3	1534	Gga/Aga																																																																														
HGF	3082	MSKCC	GRCh37	7	81372774	81372774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	210	474	0	ENST00000222390.5:c.760G>A	p.Gly254Ser	p.G254S	ENST00000222390	NM_000601.4	254	Ggc/Agc																																																																														
MET	4233	MSKCC	GRCh37	7	116395452	116395452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	295	526	0	ENST00000397752.3:c.1745C>T	p.Thr582Ile	p.T582I	ENST00000397752	NM_000245.2	582	aCc/aTc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371962	55371962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	192	498	0	ENST00000297316.4:c.652C>T	p.Pro218Ser	p.P218S	ENST00000297316	NM_022454.3	218	Ccg/Tcg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139804438	139804438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	223	625	0	ENST00000247668.2:c.595C>T	p.Arg199Trp	p.R199W	ENST00000247668	NM_021138.3	199	Cgg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928908	44928908	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	211	253	1	ENST00000377967.4:c.2008C>T	p.Gln670Ter	p.Q670*	ENST00000377967	NM_021140.2	670	Cag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70343496	70343497	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0027258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	282	338	1	ENST00000374080.3:c.1670_1671delinsTT	p.Ser557Phe	p.S557F	ENST00000374080		557	tCC/tTT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	243	398	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0027265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	496	385	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	277	451	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	277	451	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	277	451	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88677041	88677041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	216	267	0	ENST00000372037.3:c.826G>A	p.Glu276Lys	p.E276K	ENST00000372037	NM_004329.2	276	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112177831	112177831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	184	290	0	ENST00000257430.4:c.6540G>C	p.Lys2180Asn	p.K2180N	ENST00000257430	NM_000038.5	2180	aaG/aaC																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793250	139793251	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	384	592	0	ENST00000247668.2:c.60dup	p.Lys21GlnfsTer59	p.K21Qfs*59	ENST00000247668	NM_021138.3	20	tcc/tCcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587780066		P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	211	623	1	ENST00000269305.4:c.328del	p.Arg110ValfsTer13	p.R110Vfs*13	ENST00000269305	NM_001126112.2	110	Cgt/gt																																																																														
NF2	4771	MSKCC	GRCh37	22	30057302	30057302	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	128	470	0	ENST00000338641.4:c.784C>T	p.Arg262Ter	p.R262*	ENST00000338641	NM_000268.3	262	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	234	660	1	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979610	7979610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	156	518	0	ENST00000319144.4:c.1415C>T	p.Ser472Leu	p.S472L	ENST00000319144	NM_001139.2	472	tCg/tTg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71161721	71161721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	81	332	0	ENST00000318789.4:c.248C>T	p.Ser83Phe	p.S83F	ENST00000318789	NM_032682.5	83	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	69	347	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	69	347	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507393	8507393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	212	271	0	ENST00000356435.5:c.1585G>A	p.Glu529Lys	p.E529K	ENST00000356435		529	Gaa/Aaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609590	81609590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	98	410	0	ENST00000298171.2:c.1188G>A	p.Met396Ile	p.M396I	ENST00000298171	NM_000369.2	396	atG/atA																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188182	32188182	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	100	442	0	ENST00000375023.3:c.1159G>A	p.Gly387Arg	p.G387R	ENST00000375023	NM_004557.3	387	Gga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378643	25378643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	117	453	0	ENST00000256078.4:c.355G>A	p.Asp119Asn	p.D119N	ENST00000256078	NM_033360.2	119	Gat/Aat																																																																														
MET	4233	MSKCC	GRCh37	7	116380017	116380017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	93	373	0	ENST00000397752.3:c.1406G>A	p.Arg469Gln	p.R469Q	ENST00000397752	NM_000245.2	469	cGa/cAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286760	212286760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	51	405	1	ENST00000342788.4:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000342788	NM_005235.2	979	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	86	579	1				ENST00000310581	NM_198253.2																																																																																
NF1	4763	MSKCC	GRCh37	17	29527614	29527614	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	48	373	0	ENST00000358273.4:c.1062+1G>A		p.X354_splice	ENST00000358273	NM_001042492.2	354																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678602	88678602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	42	258	0	ENST00000360948.2:c.934G>A	p.Glu312Lys	p.E312K	ENST00000360948	NM_001012338.2	312	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535354	187535354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	49	380	0	ENST00000441802.2:c.9220C>T	p.Pro3074Ser	p.P3074S	ENST00000441802	NM_005245.3	3074	Cca/Tca																																																																														
MTOR	2475	MSKCC	GRCh37	1	11308063	11308063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	182	695	0	ENST00000361445.4:c.929C>T	p.Pro310Leu	p.P310L	ENST00000361445	NM_004958.3	310	cCt/cTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16263661	16263661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	62	323	0	ENST00000375759.3:c.10030C>T	p.Pro3344Ser	p.P3344S	ENST00000375759	NM_015001.2	3344	Cct/Tct																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699450	117699450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	111	483	0	ENST00000369458.3:c.191T>A	p.Leu64His	p.L64H	ENST00000369458	NM_024626.3	64	cTt/cAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658395	18658395	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	47	265	1	ENST00000266497.5:c.3200G>A	p.Arg1067Lys	p.R1067K	ENST00000266497		1067	aGg/aAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434960	49434960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	115	462	0	ENST00000301067.7:c.6593C>T	p.Pro2198Leu	p.P2198L	ENST00000301067	NM_003482.3	2198	cCc/cTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487629	56487629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	154	505	3	ENST00000267101.3:c.1562G>A	p.Arg521Gln	p.R521Q	ENST00000267101	NM_001982.3	521	cGa/cAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42034840	42034840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	114	487	0	ENST00000219905.7:c.4682C>T	p.Thr1561Ile	p.T1561I	ENST00000219905	NM_001164273.1	1561	aCc/aTc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724636	43724636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	141	608	0	ENST00000382044.4:c.3431C>T	p.Pro1144Leu	p.P1144L	ENST00000382044	NM_001141980.1	1144	cCt/cTt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56862896	56862896	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	47	231	0	ENST00000308159.5:c.802A>C	p.Asn268His	p.N268H	ENST00000308159	NM_014669.4	268	Aat/Cat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346900	89346900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	40	228	0	ENST00000301030.4:c.6050C>T	p.Ala2017Val	p.A2017V	ENST00000301030	NM_001256183.1	2017	gCc/gTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16001803	16001803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	105	426	0	ENST00000268712.3:c.2698C>T	p.Pro900Ser	p.P900S	ENST00000268712	NM_006311.3	900	Cct/Tct																																																																														
FLCN	201163	MSKCC	GRCh37	17	17116983	17116983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	144	446	0	ENST00000285071.4:c.1726G>A	p.Glu576Lys	p.E576K	ENST00000285071	NM_144997.5	576	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29550537	29550537	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	69	399	0	ENST00000358273.4:c.1797G>A	p.Trp599Ter	p.W599*	ENST00000358273	NM_001042492.2	599	tgG/tgA																																																																														
NF1	4763	MSKCC	GRCh37	17	29554283	29554283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	123	560	0	ENST00000358273.4:c.2299G>A	p.Glu767Lys	p.E767K	ENST00000358273	NM_001042492.2	767	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29560065	29560065	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	66	252	0	ENST00000358273.4:c.3542A>G	p.Glu1181Gly	p.E1181G	ENST00000358273	NM_001042492.2	1181	gAa/gGa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37863369	37863369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	214	596	0	ENST00000269571.5:c.200C>T	p.Thr67Ile	p.T67I	ENST00000269571		67	aCc/aTc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119040	3119040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	164	529	0	ENST00000078429.4:c.724T>C	p.Ser242Pro	p.S242P	ENST00000078429	NM_002067.2	242	Tcg/Ccg																																																																														
INSR	3643	MSKCC	GRCh37	19	7117074	7117074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	186	454	0	ENST00000302850.5:c.4142C>T	p.Pro1381Leu	p.P1381L	ENST00000302850	NM_000208.2	1381	cCt/cTt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262087	10262087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	223	469	1	ENST00000340748.4:c.2204G>A	p.Gly735Glu	p.G735E	ENST00000340748		735	gGa/gAa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18974277	18974278	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	126	546	1	ENST00000262803.5:c.2631_2632delinsAA	p.Ala878Thr	p.A878T	ENST00000262803	NM_002911.3	877	aaGGca/aaAAca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223957	36223965	+	inframe_deletion	In_Frame_Del	DEL	CCCAGGGGT	CCCAGGGGT	-			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	261	826	0	ENST00000222270.7:c.6509_6517del	p.Pro2170_Val2172del	p.P2170_V2172del	ENST00000222270	NM_014727.1	2169	gcCCCAGGGGTc/gcc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25964984	25964984	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	108	375	0	ENST00000435504.4:c.4222A>T	p.Ile1408Phe	p.I1408F	ENST00000435504		1408	Atc/Ttc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719406	190719406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	24	256	0	ENST00000441310.2:c.1408G>A	p.Gly470Ser	p.G470S	ENST00000441310	NM_000534.4	470	Ggc/Agc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719434	190719435	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	45	267	0	ENST00000441310.2:c.1436_1437delinsAA	p.Gly479Glu	p.G479E	ENST00000441310	NM_000534.4	479	gGG/gAA																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265488	198265488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	132	442	0	ENST00000335508.6:c.2669A>T	p.Glu890Val	p.E890V	ENST00000335508	NM_012433.2	890	gAa/gTa																																																																														
BARD1	580	MSKCC	GRCh37	2	215646147	215646147	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	78	388	0	ENST00000260947.4:c.451A>T	p.Ser151Cys	p.S151C	ENST00000260947	NM_000465.2	151	Agt/Tgt																																																																														
TOP1	7150	MSKCC	GRCh37	20	39742782	39742782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	89	399	0	ENST00000361337.2:c.1625C>T	p.Pro542Leu	p.P542L	ENST00000361337	NM_003286.2	542	cCt/cTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164102	47164103	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	47	274	2	ENST00000409792.3:c.2023_2024delinsAA	p.Gly675Lys	p.G675K	ENST00000409792	NM_014159.6	675	GGa/AAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55958861	55958861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	82	386	0	ENST00000263923.4:c.2992G>A	p.Asp998Asn	p.D998N	ENST00000263923	NM_002253.2	998	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295207	1295207	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	95	472	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112177323	112177323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	49	324	0	ENST00000257430.4:c.6032C>T	p.Ser2011Leu	p.S2011L	ENST00000257430	NM_000038.5	2011	tCa/tTa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460368	149460368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	65	406	1	ENST00000286301.3:c.269C>T	p.Pro90Leu	p.P90L	ENST00000286301	NM_005211.3	90	cCc/cTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515276	149515276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	132	498	0	ENST00000261799.4:c.206C>T	p.Pro69Leu	p.P69L	ENST00000261799	NM_002609.3	69	cCc/cTc																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271219	26271219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	93	337	0	ENST00000305910.3:c.394C>T	p.Arg132Cys	p.R132C	ENST00000305910	NM_003534.2	132	Cgt/Tgt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517376	157517376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	159	536	1	ENST00000346085.5:c.3940C>T	p.Pro1314Ser	p.P1314S	ENST00000346085	NM_020732.3	1314	Ccc/Tcc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979530	2979530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	97	414	0	ENST00000396946.4:c.717G>A	p.Met239Ile	p.M239I	ENST00000396946	NM_032415.4	239	atG/atA																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729808	41729808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150182559		P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	55	213	0	ENST00000242208.4:c.721C>T	p.Arg241Trp	p.R241W	ENST00000242208	NM_002192.2	241	Cgg/Tgg																																																																														
MET	4233	MSKCC	GRCh37	7	116340168	116340168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	68	225	1	ENST00000397752.3:c.1030G>A	p.Gly344Arg	p.G344R	ENST00000397752	NM_000245.2	344	Ggg/Agg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205490	38205491	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	122	612	1	ENST00000317025.8:c.199_200delinsTT	p.Pro67Phe	p.P67F	ENST00000317025	NM_023034.1	67	CCt/TTt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5077464	5077464	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	55	257	0	ENST00000381652.3:c.1876C>T	p.Gln626Ter	p.Q626*	ENST00000381652	NM_004972.3	626	Cag/Tag																																																																														
TEK	7010	MSKCC	GRCh37	9	27169585	27169585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	421	642	0	ENST00000380036.4:c.586G>A	p.Gly196Arg	p.G196R	ENST00000380036	NM_000459.3	196	Gga/Aga																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250274	110250274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	63	615	0	ENST00000374672.4:c.401C>T	p.Ser134Leu	p.S134L	ENST00000374672	NM_004235.4	134	tCg/tTg																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152860031	152860032	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0027338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	108	238	0	ENST00000406277.2:c.396_397delinsTT	p.Gln133Ter	p.Q133*	ENST00000406277	NM_152274.4	132	ttCCag/ttTTag																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	32	449	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	79	462	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	92	511	0	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161222	56161222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	134	513	1	ENST00000399503.3:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000399503	NM_005921.1	364	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	158	852	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	64	493	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ABL1	25	MSKCC	GRCh37	9	133750394	133750394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	99	671	1	ENST00000318560.5:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000318560	NM_005157.4	409	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	244	571	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	244	571	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962848	2962848	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41493047		P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	99	793	0	ENST00000396946.4:c.2060C>T	p.Ala687Val	p.A687V	ENST00000396946	NM_032415.4	687	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	102	604	0	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	117	904	4	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	131	537	1	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148544345	148544345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	132	706	3	ENST00000320356.2:c.46C>T	p.Arg16Trp	p.R16W	ENST00000320356	NM_004456.4	16	Cgg/Tgg																																																																														
SDHA	6389	MSKCC	GRCh37	5	225663	225663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	121	901	2	ENST00000264932.6:c.442G>A	p.Ala148Thr	p.A148T	ENST00000264932	NM_004168.2	148	Gcc/Acc																																																																														
PARK2	5071	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	97	647	7	ENST00000366898.1:c.1283delA	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	91	612	10	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243237	123243237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55774317		P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	132	867	0	ENST00000358487.5:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000358487	NM_000141.4	759	cGa/cAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2949715	2949715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	108	830	1	ENST00000396946.4:c.3229C>T	p.Arg1077Trp	p.R1077W	ENST00000396946	NM_032415.4	1077	Cgg/Tgg																																																																														
EED	8726	MSKCC	GRCh37	11	85961399	85961399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	55	457	0	ENST00000263360.6:c.176C>T	p.Thr59Met	p.T59M	ENST00000263360	NM_003797.3	59	aCg/aTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	244	571	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	75	354	2	ENST00000375759.3:c.9950delC	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716329	52716329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	103	628	0	ENST00000322088.6:c.773G>A	p.Arg258His	p.R258H	ENST00000322088	NM_014225.5	258	cGc/cAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098365	11098365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	109	783	0	ENST00000344626.4:c.883C>T	p.Pro295Ser	p.P295S	ENST00000344626	NM_003072.3	295	Ccc/Tcc																																																																														
CASP8	841	MSKCC	GRCh37	2	202151254	202151254	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	101	562	0	ENST00000358485.4:c.1557delG	p.Lys520AsnfsTer10	p.K520Nfs*10	ENST00000358485	NM_001080125.1	518	atG/at																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829404	72829404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200268844		P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	104	597	1	ENST00000268489.5:c.7177G>A	p.Ala2393Thr	p.A2393T	ENST00000268489	NM_006885.3	2393	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023831	27023831	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	103	542	0	ENST00000324856.7:c.941del	p.Gly314AlafsTer49	p.G314Afs*49	ENST00000324856	NM_006015.4	313	Ggg/gg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696461	47696461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	84	546	1	ENST00000347630.2:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000347630	NM_001007230.1	121	cGg/cAg																																																																														
CASP8	841	MSKCC	GRCh37	2	202137430	202137431	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	103	556	0	ENST00000358485.4:c.660_661delAA	p.Arg221SerfsTer17	p.R221Sfs*17	ENST00000358485	NM_001080125.1	220	AAa/a																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448480	49448480	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	105	665	0	ENST00000301067.7:c.231del	p.His77GlnfsTer53	p.H77Qfs*53	ENST00000301067	NM_003482.3	77	caC/ca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267002	41267002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	79	459	1	ENST00000349496.5:c.673C>T	p.Arg225Cys	p.R225C	ENST00000349496	NM_001904.3	225	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100975	41100975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	77	525	1	ENST00000373198.4:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000373198	NM_133170.3	461	Cga/Tga																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082321	16082321	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	89	997	1	ENST00000281043.3:c.139del	p.Glu47ArgfsTer84	p.E47Rfs*84	ENST00000281043	NM_005378.4	45	ccG/cc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976962	18976962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	78	563	0	ENST00000262803.5:c.3347C>T	p.Ser1116Phe	p.S1116F	ENST00000262803	NM_002911.3	1116	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874710	151874710	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	103	431	2	ENST00000262189.6:c.7828C>T	p.Arg2610Ter	p.R2610*	ENST00000262189	NM_170606.2	2610	Cga/Tga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366353	15366353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200484332		P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	67	464	1	ENST00000263377.2:c.1802C>T	p.Ser601Leu	p.S601L	ENST00000263377	NM_058243.2	601	tCg/tTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480428	89480428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	28	405	0	ENST00000336596.2:c.2265C>A	p.Asn755Lys	p.N755K	ENST00000336596	NM_005233.5	755	aaC/aaA																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551934	150551934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	113	536	0	ENST00000369026.2:c.73A>G	p.Ser25Gly	p.S25G	ENST00000369026	NM_021960.4	25	Agc/Ggc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46267849	46267849	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	65	649	1	ENST00000371998.3:c.2615del	p.Asn872IlefsTer20	p.N872Ifs*20	ENST00000371998		870	gtA/gt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307639	118307639	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	146	762	5	ENST00000534358.1:c.416del	p.Gly139GlufsTer11	p.G139Efs*11	ENST00000534358	NM_005933.3	138	Ggg/gg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655328	45655328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	106	957	0	ENST00000407780.3:c.524C>T	p.Thr175Met	p.T175M	ENST00000407780	NM_001283052.1	175	aCg/aTg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191157	185191157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	41	480	0	ENST00000265026.3:c.2038C>T	p.Arg680Trp	p.R680W	ENST00000265026	NM_004721.4	680	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107098	27107098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	80	466	0	ENST00000324856.7:c.6709G>A	p.Ala2237Thr	p.A2237T	ENST00000324856	NM_006015.4	2237	Gcg/Acg																																																																														
RET	5979	MSKCC	GRCh37	10	43608363	43608363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	97	970	1	ENST00000355710.3:c.1711G>A	p.Asp571Asn	p.D571N	ENST00000355710	NM_020975.4	571	Gat/Aat																																																																														
RET	5979	MSKCC	GRCh37	10	43610086	43610086	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184498773		P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	84	678	0	ENST00000355710.3:c.2038G>A	p.Ala680Thr	p.A680T	ENST00000355710	NM_020975.4	680	Gcc/Acc																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161396	2161396	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	100	707	0	ENST00000434045.2:c.131T>C	p.Leu44Pro	p.L44P	ENST00000434045	NM_001127598.1	44	cTt/cCt																																																																														
ATM	472	MSKCC	GRCh37	11	108153474	108153474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	95	543	0	ENST00000278616.4:c.3614G>A	p.Arg1205His	p.R1205H	ENST00000278616	NM_000051.3	1205	cGt/cAt																																																																														
RAD52	5893	MSKCC	GRCh37	12	1039243	1039243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	49	614	1	ENST00000358495.3:c.254C>T	p.Ala85Val	p.A85V	ENST00000358495	NM_134424.2	85	gCa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25368445	25368445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	34	528	1	ENST00000256078.4:c.500G>T	p.Arg167Ile	p.R167I	ENST00000256078	NM_033360.2	167	aGa/aTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438650	49438650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	111	745	1	ENST00000301067.7:c.4840C>T	p.Arg1614Trp	p.R1614W	ENST00000301067	NM_003482.3	1614	Cgg/Tgg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869523	102869523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	40	566	0	ENST00000307046.8:c.118C>T	p.Leu40Phe	p.L40F	ENST00000307046	NM_001111285.1	40	Ctc/Ttc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784077	120784077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	119	933	3	ENST00000257552.2:c.908G>A	p.Arg303His	p.R303H	ENST00000257552	NM_002442.3	303	cGc/cAc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120805882	120805882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	126	884	1	ENST00000257552.2:c.196G>A	p.Val66Ile	p.V66I	ENST00000257552	NM_002442.3	66	Gtc/Atc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514607	103514607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	33	429	0	ENST00000355739.4:c.1108C>A	p.Arg370Ser	p.R370S	ENST00000355739	NM_000123.3	370	Cgt/Agt																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873837	35873837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	73	260	2	ENST00000216797.5:c.14C>T	p.Ala5Val	p.A5V	ENST00000216797	NM_020529.2	5	gCc/gTc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838097	89838097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	79	528	0	ENST00000389301.3:c.2140C>T	p.Arg714Trp	p.R714W	ENST00000389301	NM_000135.2	714	Cgg/Tgg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627757	37627757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	112	746	1	ENST00000447079.4:c.1672C>T	p.Pro558Ser	p.P558S	ENST00000447079	NM_015083.1	558	Cca/Tca																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244925	41244925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	102	604	1	ENST00000357654.3:c.2623C>A	p.Pro875Thr	p.P875T	ENST00000357654	NM_007294.3	875	Cca/Aca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213594	36213594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201585209		P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	141	955	0	ENST00000222270.7:c.2696G>A	p.Arg899Gln	p.R899Q	ENST00000222270	NM_014727.1	899	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228146	36228146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	130	749	0	ENST00000222270.7:c.7532G>A	p.Arg2511Gln	p.R2511Q	ENST00000222270	NM_014727.1	2511	cGg/cAg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716081	52716081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	119	803	0	ENST00000322088.6:c.646G>A	p.Glu216Lys	p.E216K	ENST00000322088	NM_014225.5	216	Gag/Aag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52728977	52728977	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	79	587	1	ENST00000322088.6:c.1669C>T	p.Gln557Ter	p.Q557*	ENST00000322088	NM_014225.5	557	Cag/Tag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639551	47639551	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	62	366	0	ENST00000233146.2:c.646-2A>G		p.X216_splice	ENST00000233146	NM_000251.2	216																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31395615	31395615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	108	710	0	ENST00000328111.2:c.2468G>A	p.Arg823His	p.R823H	ENST00000328111	NM_006892.3	823	cGt/cAt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262827	46262827	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	148	540	1	ENST00000371998.3:c.1000C>T	p.Arg334Ter	p.R334*	ENST00000371998		334	Cga/Tga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57470732	57470732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	94	354	0	ENST00000371085.3:c.205A>G	p.Asn69Asp	p.N69D	ENST00000371085	NM_000516.4	69	Aat/Gat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163339	47163339	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	66	414	0	ENST00000409792.3:c.2787A>G	p.Ile929Met	p.I929M	ENST00000409792	NM_014159.6	929	atA/atG																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280015	66280015	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	41	274	0	ENST00000273854.3:c.1674A>T	p.Glu558Asp	p.E558D	ENST00000273854	NM_004439.5	558	gaA/gaT																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39074468	39074468	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	146	476	0	ENST00000357387.3:c.12C>G	p.Ile4Met	p.I4M	ENST00000357387	NM_152756.3	4	atC/atG																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591217	67591261	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAA	AATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAA	-			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	47	425	0	ENST00000274335.5:c.1746-29_1761del		p.X582_splice	ENST00000274335		582																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912307	29912307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	78	772	0	ENST00000376809.5:c.926T>C	p.Val309Ala	p.V309A	ENST00000376809	NM_002116.7	309	gTg/gCg																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683673	162683673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	31	574	0	ENST00000366898.1:c.296C>A	p.Pro99His	p.P99H	ENST00000366898	NM_004562.2	99	cCc/cAc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542570	141542570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	96	649	1	ENST00000220592.5:c.2416G>A	p.Ala806Thr	p.A806T	ENST00000220592	NM_012154.3	806	Gct/Act																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8375937	8375937	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	22	341	0	ENST00000356435.5:c.4660A>G	p.Ser1554Gly	p.S1554G	ENST00000356435		1554	Agt/Ggt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399937	139399937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	115	878	1	ENST00000277541.6:c.4411G>A	p.Ala1471Thr	p.A1471T	ENST00000277541	NM_017617.3	1471	Gcg/Acg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401047	139401047	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	124	788	0	ENST00000277541.6:c.3946T>C	p.Cys1316Arg	p.C1316R	ENST00000277541	NM_017617.3	1316	Tgc/Cgc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314945	1314945	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0027698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	59	673	1				ENST00000381566																																																																																	
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	684	428	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	336	466	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	336	466	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	336	466	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38952333	38952333	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	79	332	0	ENST00000357387.3:c.3092C>G	p.Ser1031Cys	p.S1031C	ENST00000357387	NM_152756.3	1031	tCt/tGt																																																																														
TET2	54790	MSKCC	GRCh37	4	106197054	106197054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	178	322	0	ENST00000380013.4:c.5387G>A	p.Gly1796Glu	p.G1796E	ENST00000380013	NM_001127208.2	1796	gGg/gAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29483067	29483067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	120	692	0	ENST00000358273.4:c.127C>G	p.Leu43Val	p.L43V	ENST00000358273	NM_001042492.2	43	Cta/Gta																																																																														
FYN	2534	MSKCC	GRCh37	6	111983048	111983048	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	244	692	1	ENST00000368678.4:c.1499G>A	p.Trp500Ter	p.W500*	ENST00000368678		500	tGg/tAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133237644	133237644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	544	701	3	ENST00000320574.5:c.2971G>A	p.Glu991Lys	p.E991K	ENST00000320574	NM_006231.2	991	Gag/Aag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217330	11217330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	373	719	0	ENST00000361445.4:c.4348T>G	p.Tyr1450Asp	p.Y1450D	ENST00000361445	NM_004958.3	1450	Tat/Gat																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783766	50783766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	202	756	0	ENST00000398568.2:c.157C>T	p.Arg53Cys	p.R53C	ENST00000398568	NM_001042412.1	53	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331667	8331667	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147793450		P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	183	519	1	ENST00000356435.5:c.5449G>A	p.Gly1817Arg	p.G1817R	ENST00000356435		1817	Gga/Aga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979543	2979543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148083162		P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	191	494	0	ENST00000396946.4:c.704G>A	p.Arg235Gln	p.R235Q	ENST00000396946	NM_032415.4	235	cGg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152167	11152167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	295	749	0	ENST00000344626.4:c.4355C>T	p.Ser1452Phe	p.S1452F	ENST00000344626	NM_003072.3	1452	tCc/tTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98242737	98242737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	342	453	3	ENST00000331920.6:c.880C>T	p.Arg294Cys	p.R294C	ENST00000331920	NM_000264.3	294	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579312	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	350	537	2	ENST00000269305.4:c.375_375+1delinsAA		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174943	11174943	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	167	616	0	ENST00000361445.4:c.7091T>C	p.Val2364Ala	p.V2364A	ENST00000361445	NM_004958.3	2364	gTt/gCt																																																																														
RET	5979	MSKCC	GRCh37	10	43597957	43597957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	316	746	0	ENST00000355710.3:c.505G>A	p.Glu169Lys	p.E169K	ENST00000355710	NM_020975.4	169	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416120	49416125	+	inframe_deletion	In_Frame_Del	DEL	ATGTAG	ATGTAG	-			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	184	450	0	ENST00000301067.7:c.16350_16355del	p.Ile5450_Tyr5451del	p.I5450_Y5451del	ENST00000301067	NM_003482.3	5450	atCTACATg/atg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860090	57860090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	564	827	1	ENST00000228682.2:c.832del	p.Glu278SerfsTer2	p.E278Sfs*2	ENST00000228682	NM_005269.2	277	aGg/ag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860092	57860092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	564	818	1	ENST00000228682.2:c.832G>A	p.Glu278Lys	p.E278K	ENST00000228682	NM_005269.2	278	Gag/Aag																																																																														
FLT3	2322	MSKCC	GRCh37	13	28610095	28610095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	427	562	0	ENST00000241453.7:c.1395G>T	p.Lys465Asn	p.K465N	ENST00000241453	NM_004119.2	465	aaG/aaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911074	32911074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	245	592	0	ENST00000380152.3:c.2582A>G	p.Gln861Arg	p.Q861R	ENST00000380152		861	cAa/cGa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913105	32913105	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	315	655	0	ENST00000380152.3:c.4613C>G	p.Ser1538Cys	p.S1538C	ENST00000380152		1538	tCt/tGt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32932014	32932014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	255	413	2	ENST00000380152.3:c.7753G>A	p.Gly2585Arg	p.G2585R	ENST00000380152		2585	Gga/Aga																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557654	95557654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	182	626	0	ENST00000343455.3:c.5413C>T	p.Pro1805Ser	p.P1805S	ENST00000343455	NM_177438.2	1805	Cca/Tca																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643281	38643281	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	238	455	0	ENST00000299084.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000299084	NM_152594.2	251	Cga/Tga																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639296	3639296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	247	688	1	ENST00000294008.3:c.4343C>T	p.Pro1448Leu	p.P1448L	ENST00000294008	NM_032444.2	1448	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821671	72821671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	94	193	0	ENST00000268489.5:c.10504C>T	p.Leu3502Phe	p.L3502F	ENST00000268489	NM_006885.3	3502	Ctt/Ttt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89828373	89828373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	433	565	1	ENST00000389301.3:c.2836C>T	p.Leu946Phe	p.L946F	ENST00000389301	NM_000135.2	946	Ctt/Ttt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15978900	15978901	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	369	665	0	ENST00000268712.3:c.3617_3618delinsTT	p.Ser1206Phe	p.S1206F	ENST00000268712	NM_006311.3	1206	tCC/tTT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15978901	15978901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	368	662	0	ENST00000268712.3:c.3617C>T	p.Ser1206Phe	p.S1206F	ENST00000268712	NM_006311.3	1206	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29657459	29657459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	552	577	0	ENST00000358273.4:c.5755G>C	p.Glu1919Gln	p.E1919Q	ENST00000358273	NM_001042492.2	1919	Gag/Cag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245024	41245024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	477	713	1	ENST00000357654.3:c.2524G>A	p.Glu842Lys	p.E842K	ENST00000357654	NM_007294.3	842	Gaa/Aaa																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66518960	66518960	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	370	518	0	ENST00000358598.2:c.241G>T	p.Glu81Ter	p.E81*	ENST00000358598	NM_212471.2	81	Gag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120290	70120290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1982	334	911	0	ENST00000245479.2:c.1292C>T	p.Ser431Phe	p.S431F	ENST00000245479	NM_000346.3	431	tCc/tTc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372079	45372079	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	189	621	0	ENST00000262160.6:c.1090C>T	p.Gln364Ter	p.Q364*	ENST00000262160	NM_005901.5	364	Cag/Tag																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619821	1619822	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	496	797	2	ENST00000344749.5:c.1124_1125delinsTT	p.Pro375Leu	p.P375L	ENST00000344749	NM_001136139.2	375	cCC/cTT																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279988	18279988	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	189	559	0	ENST00000222254.8:c.2071G>T	p.Glu691Ter	p.E691*	ENST00000222254	NM_005027.3	691	Gag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229054	36229054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	273	753	2	ENST00000222270.7:c.7834G>A	p.Val2612Met	p.V2612M	ENST00000222270	NM_014727.1	2612	Gtg/Atg																																																																														
AXL	558	MSKCC	GRCh37	19	41762465	41762465	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	197	577	0	ENST00000301178.4:c.2145G>A	p.Trp715Ter	p.W715*	ENST00000301178	NM_021913.4	715	tgG/tgA																																																																														
ALK	238	MSKCC	GRCh37	2	29455202	29455202	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	403	615	0	ENST00000389048.3:c.2600T>A	p.Val867Asp	p.V867D	ENST00000389048	NM_004304.4	867	gTt/gAt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421202	12421202	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	156	481	0	ENST00000287820.6:c.83-1G>T		p.X28_splice	ENST00000287820	NM_015869.4	28																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52598102	52598102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	220	611	0	ENST00000394830.3:c.3764C>T	p.Ser1255Phe	p.S1255F	ENST00000394830	NM_018313.4	1255	tCt/tTt																																																																														
ATR	545	MSKCC	GRCh37	3	142269104	142269105	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	138	429	0	ENST00000350721.4:c.2845_2846delinsTA	p.Leu949Tyr	p.L949Y	ENST00000350721	NM_001184.3	949	CTt/TAt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167819	185167819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	858	495	1	ENST00000265026.3:c.1142G>A	p.Gly381Glu	p.G381E	ENST00000265026	NM_004721.4	381	gGa/gAa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1977026	1977026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	455	643	0	ENST00000382891.5:c.3520G>A	p.Glu1174Lys	p.E1174K	ENST00000382891	NM_133335.3	1174	Gag/Aag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66218790	66218790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	208	454	0	ENST00000273854.3:c.2268G>A	p.Met756Ile	p.M756I	ENST00000273854	NM_004439.5	756	atG/atA																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149498376	149498376	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	221	704	0	ENST00000261799.4:c.2838G>C	p.Glu946Asp	p.E946D	ENST00000261799	NM_002609.3	946	gaG/gaC																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169960	32169961	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	238	741	1	ENST00000375023.3:c.3647_3648delinsTT	p.Ser1216Phe	p.S1216F	ENST00000375023	NM_004557.3	1216	tCC/tTT																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519539	137519539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	138	366	0	ENST00000367739.4:c.1099C>T	p.Pro367Ser	p.P367S	ENST00000367739	NM_000416.2	367	Ccg/Tcg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200033	138200034	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	141	463	0	ENST00000237289.4:c.1451_1452delinsTT	p.Pro484Leu	p.P484L	ENST00000237289	NM_001270507.1	484	cCC/cTT																																																																														
BRAF	673	MSKCC	GRCh37	7	140507863	140507863	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	99	436	0	ENST00000288602.6:c.609-1G>A		p.X203_splice	ENST00000288602	NM_004333.4	203																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38273417	38273418	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	494	1008	2	ENST00000425967.3:c.1917_1918delinsTT	p.Arg640Ter	p.R640*	ENST00000425967	NM_001174067.1	639	gcCCga/gcTTga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139407472	139407473	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	657	563	0	ENST00000277541.6:c.2467_2467+1delinsAA		p.X823_splice	ENST00000277541	NM_017617.3	823																																																																															
MED12	9968	MSKCC	GRCh37	X	70347799	70347799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	459	318	0	ENST00000374080.3:c.3038C>T	p.Ser1013Leu	p.S1013L	ENST00000374080		1013	tCa/tTa																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152857981	152857981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	53	91	0	ENST00000406277.2:c.634G>C	p.Glu212Gln	p.E212Q	ENST00000406277	NM_152274.4	212	Gag/Cag																																																																														
ATR	545	MSKCC	GRCh37	3	142269104	142269104	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	138	429	0	ENST00000350721.4:c.2846T>A	p.Leu949His	p.L949H	ENST00000350721	NM_001184.3	949	cTt/cAt																																																																														
ATR	545	MSKCC	GRCh37	3	142269105	142269105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	136	425	0	ENST00000350721.4:c.2845C>T	p.Leu949Phe	p.L949F	ENST00000350721	NM_001184.3	949	Ctt/Ttt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	32	441	0				ENST00000310581	NM_198253.2																																																																																
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	12	254	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	66	500	2	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185169106	185169106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	25	531	0	ENST00000265026.3:c.1201C>T	p.Arg401Trp	p.R401W	ENST00000265026	NM_004721.4	401	Cgg/Tgg																																																																														
LYN	4067	MSKCC	GRCh37	8	56912075	56912075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	55	643	3	ENST00000519728.1:c.1303G>A	p.Glu435Lys	p.E435K	ENST00000519728	NM_002350.3	435	Gaa/Aaa																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	68	699	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	29	380	0				ENST00000310581	NM_198253.2																																																																																
FLT4	2324	MSKCC	GRCh37	5	180057021	180057021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	43	703	0	ENST00000261937.6:c.598G>A	p.Asp200Asn	p.D200N	ENST00000261937	NM_182925.4	200	Gat/Aat																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94212847	94212847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	28	488	0	ENST00000323929.3:c.395C>T	p.Pro132Leu	p.P132L	ENST00000323929	NM_005591.3	132	cCc/cTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910810	32910810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	28	416	1	ENST00000380152.3:c.2318C>T	p.Pro773Leu	p.P773L	ENST00000380152		773	cCt/cTt																																																																														
MGA	23269	MSKCC	GRCh37	15	41962081	41962081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	28	427	0	ENST00000219905.7:c.989G>A	p.Arg330Gln	p.R330Q	ENST00000219905	NM_001164273.1	330	cGa/cAa																																																																														
CD276	80381	MSKCC	GRCh37	15	73996805	73996805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	19	325	0	ENST00000318443.5:c.1361C>T	p.Thr454Ile	p.T454I	ENST00000318443	NM_001024736.1	454	aCc/aTc																																																																														
BLM	641	MSKCC	GRCh37	15	91346868	91346868	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	44	574	0	ENST00000355112.3:c.3476T>C	p.Leu1159Ser	p.L1159S	ENST00000355112	NM_000057.2	1159	tTa/tCa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302267	15302267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	60	667	0	ENST00000263388.2:c.1004C>A	p.Ser335Tyr	p.S335Y	ENST00000263388	NM_000435.2	335	tCt/tAt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266748	18266748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	38	630	1	ENST00000222254.8:c.59C>T	p.Pro20Leu	p.P20L	ENST00000222254	NM_005027.3	20	cCg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224112	36224112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	44	669	0	ENST00000222270.7:c.6662C>T	p.Pro2221Leu	p.P2221L	ENST00000222270	NM_014727.1	2221	cCc/cTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578302	212578302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	32	556	0	ENST00000342788.4:c.955G>A	p.Gly319Arg	p.G319R	ENST00000342788	NM_005235.2	319	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408930	41408930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	22	435	0	ENST00000373198.4:c.496G>A	p.Glu166Lys	p.E166K	ENST00000373198	NM_133170.3	166	Gaa/Aaa																																																																														
BCL6	604	MSKCC	GRCh37	3	187446315	187446315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	41	443	0	ENST00000232014.4:c.1373C>T	p.Pro458Leu	p.P458L	ENST00000232014	NM_001130845.1	458	cCc/cTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55970978	55970978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	49	525	0	ENST00000263923.4:c.1819G>A	p.Asp607Asn	p.D607N	ENST00000263923	NM_002253.2	607	Gat/Aat																																																																														
PARK2	5071	MSKCC	GRCh37	6	162864473	162864473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	33	450	1	ENST00000366898.1:c.40C>T	p.Pro14Ser	p.P14S	ENST00000366898	NM_004562.2	14	Cca/Tca																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026825	6026825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	32	450	0	ENST00000265849.7:c.1571C>T	p.Pro524Leu	p.P524L	ENST00000265849	NM_000535.5	524	cCa/cTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859443	151859443	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	89	421	0	ENST00000262189.6:c.11219A>T	p.Asn3740Ile	p.N3740I	ENST00000262189	NM_170606.2	3740	aAt/aTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	113	540	0				ENST00000310581	NM_198253.2																																																																																
KDR	3791	MSKCC	GRCh37	4	55973911	55973911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	57	506	1	ENST00000263923.4:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000263923	NM_002253.2	469	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	88	658	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509081	106509081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187257485		P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	73	641	0	ENST00000359195.3:c.1075C>T	p.Arg359Cys	p.R359C	ENST00000359195	NM_002649.2	359	Cgc/Tgc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979378	93979378	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	55	268	0	ENST00000369303.4:c.1450G>A	p.Asp484Asn	p.D484N	ENST00000369303	NM_004440.3	484	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	57	694	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265323	152265323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	90	393	0	ENST00000206249.3:c.776G>A	p.Arg259Gln	p.R259Q	ENST00000206249	NM_000125.3	259	cGa/cAa																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	142	802	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	94	394	0				ENST00000310581	NM_198253.2																																																																																
NOTCH4	4855	MSKCC	GRCh37	6	32184737	32184737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	115	626	1	ENST00000375023.3:c.1846C>T	p.Pro616Ser	p.P616S	ENST00000375023	NM_004557.3	616	Ccc/Tcc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162722903	162722903	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	128	687	0	ENST00000367921.3:c.101T>G	p.Leu34Arg	p.L34R	ENST00000367921	NM_006182.2	34	cTg/cGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448535	49448535	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	85	540	2	ENST00000301067.7:c.177-1G>A		p.X59_splice	ENST00000301067	NM_003482.3	59																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50480572	50480572	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	104	579	0	ENST00000394963.4:c.442A>T	p.Met148Leu	p.M148L	ENST00000394963	NM_003076.4	148	Atg/Ttg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777989	3777990	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	206	973	2	ENST00000262367.5:c.7058_7059delinsTA	p.Arg2353Leu	p.R2353L	ENST00000262367	NM_004380.2	2353	cGG/cTA																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682479	37682479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	76	554	1	ENST00000447079.4:c.3670G>T	p.Ala1224Ser	p.A1224S	ENST00000447079	NM_015083.1	1224	Gca/Tca																																																																														
AXL	558	MSKCC	GRCh37	19	41736914	41736915	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	67	700	2	ENST00000301178.4:c.629_630delinsTT	p.Ala210Val	p.A210V	ENST00000301178	NM_021913.4	210	gCC/gTT																																																																														
ERF	2077	MSKCC	GRCh37	19	42752686	42752687	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	74	680	2	ENST00000222329.4:c.1577_1578delinsTT	p.Thr526Ile	p.T526I	ENST00000222329	NM_006494.2	526	aCC/aTT																																																																														
CIC	23152	MSKCC	GRCh37	19	42794472	42794473	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	76	868	3	ENST00000575354.2:c.1552_1553delinsTT	p.Pro518Leu	p.P518L	ENST00000575354	NM_015125.3	518	CCg/TTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187531170	187531170	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	67	367	0	ENST00000441802.2:c.9854-1G>A		p.X3285_splice	ENST00000441802	NM_005245.3	3285																																																																															
MSH3	4437	MSKCC	GRCh37	5	80040367	80040367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	124	713	0	ENST00000265081.6:c.1696C>T	p.His566Tyr	p.H566Y	ENST00000265081	NM_002439.4	566	Cac/Tac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673473	30673473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	128	571	0	ENST00000376406.3:c.3487C>T	p.Pro1163Ser	p.P1163S	ENST00000376406	NM_014641.2	1163	Ccc/Tcc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800507	32800507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	94	835	2	ENST00000374899.4:c.1040C>T	p.Ala347Val	p.A347V	ENST00000374899	NM_018833.2	347	gCc/gTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964484	93964484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	64	548	0	ENST00000369303.4:c.2413C>T	p.Pro805Ser	p.P805S	ENST00000369303	NM_004440.3	805	Ccc/Tcc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725549	117725550	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	AAA			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	136	596	1	ENST00000368508.3:c.331_332delinsTTT	p.Gly111PhefsTer36	p.G111Ffs*36	ENST00000368508	NM_002944.2	111	GGa/TTTa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141557686	141557687	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	203	689	1	ENST00000220592.5:c.1628_1629delinsTT	p.Ala543Val	p.A543V	ENST00000220592	NM_012154.3	543	gCC/gTT																																																																														
FANCC	2176	MSKCC	GRCh37	9	97876930	97876930	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	46	579	0	ENST00000289081.3:c.1135G>C	p.Val379Leu	p.V379L	ENST00000289081	NM_000136.2	379	Gtt/Ctt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	71	325	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	125	518	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170021	32170021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	171	679	0	ENST00000375023.3:c.3587G>A	p.Gly1196Glu	p.G1196E	ENST00000375023	NM_004557.3	1196	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	136	537	0	ENST00000269305.4:c.581T>A	p.Leu194His	p.L194H	ENST00000269305	NM_001126112.2	194	cTt/cAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	39	416	0	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317572	1317572	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	127	317	0				ENST00000381566																																																																																	
IKZF1	10320	MSKCC	GRCh37	7	50467780	50467780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	93	474	0	ENST00000331340.3:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000331340	NM_006060.4	339	Gag/Aag																																																																														
YES1	7525	MSKCC	GRCh37	18	756577	756577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	107	417	0	ENST00000314574.4:c.251C>T	p.Ser84Leu	p.S84L	ENST00000314574	NM_005433.3	84	tCa/tTa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78811795	78811795	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	90	341	0	ENST00000306801.3:c.1210C>T	p.Arg404Trp	p.R404W	ENST00000306801	NM_020761.2	404	Cgg/Tgg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048115	180048115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	122	588	0	ENST00000261937.6:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000261937	NM_182925.4	720	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40789994	40789994	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	89	329	0	ENST00000373198.4:c.2737G>A	p.Glu913Lys	p.E913K	ENST00000373198	NM_133170.3	913	Gag/Aag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47127776	47127776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	167	400	0	ENST00000409792.3:c.5306C>T	p.Ser1769Phe	p.S1769F	ENST00000409792	NM_014159.6	1769	tCc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211166	55211166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	102	417	0	ENST00000275493.2:c.409A>G	p.Met137Val	p.M137V	ENST00000275493	NM_005228.3	137	Atg/Gtg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120290	94120290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	60	232	0	ENST00000369303.4:c.761G>A	p.Gly254Glu	p.G254E	ENST00000369303	NM_004440.3	254	gGa/gAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938278	76938278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	124	240	0	ENST00000373344.5:c.2470G>A	p.Glu824Lys	p.E824K	ENST00000373344	NM_000489.3	824	Gag/Aag																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625326	69625326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	77	533	0	ENST00000334134.2:c.467C>G	p.Ser156Cys	p.S156C	ENST00000334134	NM_005247.2	156	tCt/tGt																																																																														
BIRC3	330	MSKCC	GRCh37	11	102199674	102199674	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	139	391	0	ENST00000263464.3:c.1079C>T	p.Ser360Leu	p.S360L	ENST00000263464	NM_001165.4	360	tCa/tTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376235	118376235	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	43	360	0	ENST00000534358.1:c.9628C>A	p.Leu3210Ile	p.L3210I	ENST00000534358	NM_005933.3	3210	Ctc/Atc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800924	18800924	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	21	433	0	ENST00000266497.5:c.4300A>C	p.Lys1434Gln	p.K1434Q	ENST00000266497		1434	Aaa/Caa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563339	21563339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	195	732	0	ENST00000382592.4:c.580C>T	p.Pro194Ser	p.P194S	ENST00000382592	NM_014572.2	194	Cca/Tca																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678467	88678467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	51	536	0	ENST00000360948.2:c.1069G>A	p.Glu357Lys	p.E357K	ENST00000360948	NM_001012338.2	357	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858117	9858117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	128	523	0	ENST00000330684.3:c.3284C>T	p.Pro1095Leu	p.P1095L	ENST00000330684	NM_001134407.1	1095	cCc/cTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883161	37883161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	64	613	0	ENST00000269571.5:c.3064G>A	p.Glu1022Lys	p.E1022K	ENST00000269571		1022	Gag/Aag																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805726	46805726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	70	568	0	ENST00000290295.7:c.230C>T	p.Pro77Leu	p.P77L	ENST00000290295	NM_006361.5	77	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285186	15285186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	181	664	1	ENST00000263388.2:c.4429G>A	p.Asp1477Asn	p.D1477N	ENST00000263388	NM_000435.2	1477	Gac/Aac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89444995	89444995	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	31	393	0	ENST00000336596.2:c.1315C>G	p.Pro439Ala	p.P439A	ENST00000336596	NM_005233.5	439	Cct/Gct																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664798	138664798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	35	185	1	ENST00000330315.3:c.767G>A	p.Gly256Glu	p.G256E	ENST00000330315	NM_023067.3	256	gGg/gAg																																																																														
ATR	545	MSKCC	GRCh37	3	142234298	142234298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	99	414	0	ENST00000350721.4:c.4442G>A	p.Ser1481Asn	p.S1481N	ENST00000350721	NM_001184.3	1481	aGt/aAt																																																																														
KDR	3791	MSKCC	GRCh37	4	55976849	55976849	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	96	526	0	ENST00000263923.4:c.1063C>A	p.Leu355Ile	p.L355I	ENST00000263923	NM_002253.2	355	Ctt/Att																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557848	187557848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	104	396	0	ENST00000441802.2:c.3863C>T	p.Ser1288Phe	p.S1288F	ENST00000441802	NM_005245.3	1288	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068102	94068102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	80	292	0	ENST00000369303.4:c.860C>T	p.Ser287Phe	p.S287F	ENST00000369303	NM_004440.3	287	tCc/tTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555155	106555155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	130	552	0	ENST00000369096.4:c.2272G>A	p.Glu758Lys	p.E758K	ENST00000369096	NM_001198.3	758	Gaa/Aaa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109315667	109315667	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	75	360	0	ENST00000436639.2:c.1118C>T	p.Ser373Leu	p.S373L	ENST00000436639	NM_014454.2	373	tCa/tTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968135	68968135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	241	520	1	ENST00000288368.4:c.1164G>A	p.Met388Ile	p.M388I	ENST00000288368	NM_024870.2	388	atG/atA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020344	69020344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	138	331	0	ENST00000288368.4:c.2716T>A	p.Phe906Ile	p.F906I	ENST00000288368	NM_024870.2	906	Ttt/Att																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412909	63412910	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	133	315	0	ENST00000330258.3:c.257_258delinsTT	p.Ser86Phe	p.S86F	ENST00000330258	NM_152424.3	86	tCC/tTT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	245	432	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866378	42866378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	87	736	0	ENST00000398585.3:c.254C>T	p.Pro85Leu	p.P85L	ENST00000398585	NM_001135099.1	85	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	112	421	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	112	421	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716344	18716344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	49	382	0	ENST00000266497.5:c.3691G>A	p.Glu1231Lys	p.E1231K	ENST00000266497		1231	Gaa/Aaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492784	56492784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	233	576	0	ENST00000407977.2:c.155C>T	p.Pro52Leu	p.P52L	ENST00000407977		52	cCc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112116491	112116491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	38	315	0	ENST00000257430.4:c.536C>T	p.Ser179Phe	p.S179F	ENST00000257430	NM_000038.5	179	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	112	421	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441265	52441265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	42	511	0	ENST00000460680.1:c.505C>T	p.His169Tyr	p.H169Y	ENST00000460680	NM_004656.3	169	Cac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	93	340	0				ENST00000310581	NM_198253.2																																																																																
RPTOR	57521	MSKCC	GRCh37	17	78796963	78796963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	69	544	0	ENST00000306801.3:c.1076C>T	p.Ser359Leu	p.S359L	ENST00000306801	NM_020761.2	359	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097752	27097752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	57	567	0	ENST00000324856.7:c.3341C>T	p.Pro1114Leu	p.P1114L	ENST00000324856	NM_006015.4	1114	cCc/cTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187776	11187776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	74	623	0	ENST00000361445.4:c.6121G>A	p.Glu2041Lys	p.E2041K	ENST00000361445	NM_004958.3	2041	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059183	27059183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	119	436	0	ENST00000324856.7:c.1820C>T	p.Ser607Leu	p.S607L	ENST00000324856	NM_006015.4	607	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444711	49444711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	265	898	1	ENST00000301067.7:c.2755C>T	p.Pro919Ser	p.P919S	ENST00000301067	NM_003482.3	919	Cca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445118	49445118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	113	719	0	ENST00000301067.7:c.2348C>T	p.Pro783Leu	p.P783L	ENST00000301067	NM_003482.3	783	cCt/cTt																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50479211	50479211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	145	322	0	ENST00000394963.4:c.59G>A	p.Gly20Glu	p.G20E	ENST00000394963	NM_003076.4	20	gGa/gAa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924348	112924348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	126	607	0	ENST00000351677.2:c.1294C>T	p.Pro432Ser	p.P432S	ENST00000351677	NM_002834.3	432	Cct/Tct																																																																														
FLT1	2321	MSKCC	GRCh37	13	28880909	28880910	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	52	415	2	ENST00000282397.4:c.3721-1_3721delinsAA		p.X1241_splice	ENST00000282397	NM_002019.4	1241																																																																															
INSR	3643	MSKCC	GRCh37	19	7184489	7184489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200199169		P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	63	621	1	ENST00000302850.5:c.812C>T	p.Pro271Leu	p.P271L	ENST00000302850	NM_000208.2	271	cCg/cTg																																																																														
BBC3	27113	MSKCC	GRCh37	19	47731433	47731433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	74	97	0	ENST00000449228.1:c.359del	p.Pro120ArgfsTer109	p.P120Rfs*109	ENST00000449228	NM_001127240.2	120	cCg/cg																																																																														
EP300	2033	MSKCC	GRCh37	22	41574701	41574701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	160	810	0	ENST00000263253.7:c.6986C>T	p.Pro2329Leu	p.P2329L	ENST00000263253	NM_001429.3	2329	cCa/cTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480451	89480451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	68	348	0	ENST00000336596.2:c.2288C>T	p.Ser763Phe	p.S763F	ENST00000336596	NM_005233.5	763	tCt/tTt																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119631608	119631608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	63	415	1	ENST00000316626.5:c.658C>T	p.Arg220Trp	p.R220W	ENST00000316626		220	Cgg/Tgg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751427	57751427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	69	421	0	ENST00000274289.3:c.1564G>A	p.Asp522Asn	p.D522N	ENST00000274289	NM_006622.3	522	Gac/Aac																																																																														
TEK	7010	MSKCC	GRCh37	9	27157868	27157868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	46	490	0	ENST00000380036.4:c.92C>T	p.Ser31Phe	p.S31F	ENST00000380036	NM_000459.3	31	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	323	572	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	371	609	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	374	415	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	374	415	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1293683	1293683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	432	659	1	ENST00000310581.5:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000310581	NM_198253.2	440	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	461	424	1	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	374	415	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578401	7578401	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147002414		P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	423	561	0	ENST00000269305.4:c.529C>T	p.Pro177Ser	p.P177S	ENST00000269305	NM_001126112.2	177	Ccc/Tcc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745609	162745609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	360	474	0	ENST00000367921.3:c.2024C>T	p.Ser675Phe	p.S675F	ENST00000367921	NM_006182.2	675	tCc/tTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133218390	133218390	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	190	677	0	ENST00000320574.5:c.5221C>T	p.Gln1741Ter	p.Q1741*	ENST00000320574	NM_006231.2	1741	Cag/Tag																																																																														
MPL	4352	MSKCC	GRCh37	1	43812605	43812605	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	181	589	0	ENST00000372470.3:c.1308G>T	p.Lys436Asn	p.K436N	ENST00000372470	NM_005373.2	436	aaG/aaT																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94224081	94224081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	114	492	0	ENST00000323929.3:c.71G>A	p.Gly24Glu	p.G24E	ENST00000323929	NM_005591.3	24	gGa/gAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658283	18658283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	270	538	0	ENST00000266497.5:c.3088G>A	p.Gly1030Arg	p.G1030R	ENST00000266497		1030	Gga/Aga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224698	36224698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	526	776	0	ENST00000222270.7:c.7084C>T	p.Pro2362Ser	p.P2362S	ENST00000222270	NM_014727.1	2362	Ccg/Tcg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944365	40944365	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	240	453	0	ENST00000373198.4:c.2137G>A	p.Gly713Arg	p.G713R	ENST00000373198	NM_133170.3	713	Gga/Aga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980726	40980726	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	127	399	0	ENST00000373198.4:c.1760C>T	p.Ser587Leu	p.S587L	ENST00000373198	NM_133170.3	587	tCa/tTa																																																																														
ERG	2078	MSKCC	GRCh37	21	39775595	39775595	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	131	440	0	ENST00000288319.7:c.425G>A	p.Trp142Ter	p.W142*	ENST00000288319	NM_182918.3	142	tGg/tAg																																																																														
ATR	545	MSKCC	GRCh37	3	142180887	142180887	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	271	438	0	ENST00000350721.4:c.7087C>T	p.Arg2363Ter	p.R2363*	ENST00000350721	NM_001184.3	2363	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249505	153249505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	385	584	0	ENST00000281708.4:c.1273T>C	p.Trp425Arg	p.W425R	ENST00000281708	NM_033632.3	425	Tgg/Cgg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681443	30681443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	309	459	0	ENST00000376406.3:c.569C>T	p.Ser190Phe	p.S190F	ENST00000376406	NM_014641.2	190	tCt/tTt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967835	93967835	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138518092		P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	281	472	0	ENST00000369303.4:c.2092G>A	p.Glu698Lys	p.E698K	ENST00000369303	NM_004440.3	698	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116339799	116339799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	272	429	0	ENST00000397752.3:c.661G>C	p.Glu221Gln	p.E221Q	ENST00000397752	NM_000245.2	221	Gaa/Caa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151902217	151902217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	295	509	0	ENST00000262189.6:c.3935C>T	p.Ser1312Phe	p.S1312F	ENST00000262189	NM_170606.2	1312	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	89	244	0				ENST00000310581	NM_198253.2																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212812235	212812235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	87	282	2	ENST00000342788.4:c.341G>A	p.Arg114Gln	p.R114Q	ENST00000342788	NM_005235.2	114	cGa/cAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89337290	89337290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	71	417	0	ENST00000301030.4:c.7741C>T	p.Arg2581Cys	p.R2581C	ENST00000301030	NM_001256183.1	2581	Cgt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29559101	29559101	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	24	100	0	ENST00000358273.4:c.3208C>T	p.Gln1070Ter	p.Q1070*	ENST00000358273	NM_001042492.2	1070	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	88	210	0				ENST00000310581	NM_198253.2																																																																																
TET1	80312	MSKCC	GRCh37	10	70451281	70451281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	144	559	1	ENST00000373644.4:c.6121C>T	p.Pro2041Ser	p.P2041S	ENST00000373644	NM_030625.2	2041	Cca/Tca																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460463	149460463	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	144	615	0	ENST00000286301.3:c.174G>A	p.Trp58Ter	p.W58*	ENST00000286301	NM_005211.3	58	tgG/tgA																																																																														
RAD52	5893	MSKCC	GRCh37	12	1042209	1042209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	320	455	0	ENST00000358495.3:c.16G>A	p.Glu6Lys	p.E6K	ENST00000358495	NM_134424.2	6	Gaa/Aaa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95556870	95556870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	79	301	0	ENST00000343455.3:c.5734C>T	p.Leu1912Phe	p.L1912F	ENST00000343455	NM_177438.2	1912	Ctc/Ttc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972502	81972502	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	87	377	0	ENST00000359376.3:c.3295T>C	p.Phe1099Leu	p.F1099L	ENST00000359376	NM_002661.3	1099	Ttc/Ctc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794545	42794545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	233	719	0	ENST00000575354.2:c.1625C>T	p.Ser542Phe	p.S542F	ENST00000575354	NM_015125.3	542	tCc/tTc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99152631	99152631	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	89	352	0	ENST00000074304.5:c.427C>G	p.Leu143Val	p.L143V	ENST00000074304	NM_001134224.1	143	Ctg/Gtg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248501	212248501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	89	376	0	ENST00000342788.4:c.3766C>T	p.Pro1256Ser	p.P1256S	ENST00000342788	NM_005235.2	1256	Cca/Tca																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256333	46256334	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	147	371	0	ENST00000371998.3:c.561_562delinsTT	p.Gln188Ter	p.Q188*	ENST00000371998		187	acCCaa/acTTaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55981567	55981567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	47	268	0	ENST00000263923.4:c.370C>T	p.Pro124Ser	p.P124S	ENST00000263923	NM_002253.2	124	Cca/Tca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188851	32188851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	112	532	0	ENST00000375023.3:c.703G>C	p.Ala235Pro	p.A235P	ENST00000375023	NM_004557.3	235	Gca/Cca																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816814	32816815	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	138	571	3	ENST00000354258.4:c.1509_1510delinsTT	p.Leu504Phe	p.L504F	ENST00000354258	NM_000593.5	503	aaCCtt/aaTTtt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687345	117687345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	45	319	0	ENST00000368508.3:c.2706G>T	p.Arg902Ser	p.R902S	ENST00000368508	NM_002944.2	902	agG/agT																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137525576	137525576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	51	451	0	ENST00000367739.4:c.439C>T	p.His147Tyr	p.H147Y	ENST00000367739	NM_000416.2	147	Cac/Tac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55224457	55224457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	147	389	0	ENST00000275493.2:c.1139C>T	p.Ser380Phe	p.S380F	ENST00000275493	NM_005228.3	380	tCc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874034	151874034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	263	428	0	ENST00000262189.6:c.8504C>T	p.Ser2835Phe	p.S2835F	ENST00000262189	NM_170606.2	2835	tCc/tTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209360	98209360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	51	498	0	ENST00000331920.6:c.4178C>T	p.Pro1393Leu	p.P1393L	ENST00000331920	NM_000264.3	1393	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	229	697	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877197	89877197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138744489		P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	127	624	1	ENST00000389301.3:c.440C>T	p.Ser147Phe	p.S147F	ENST00000389301	NM_000135.2	147	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112176824	112176824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	104	483	0	ENST00000257430.4:c.5533C>T	p.His1845Tyr	p.H1845Y	ENST00000257430	NM_000038.5	1845	Cat/Tat																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	166	395	1	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	175	995	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245197	41245197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	151	836	1	ENST00000357654.3:c.2351C>T	p.Ser784Leu	p.S784L	ENST00000357654	NM_007294.3	784	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	222	520	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058631	72058631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	91	435	1	ENST00000357731.5:c.809G>A	p.Gly270Glu	p.G270E	ENST00000357731	NM_173808.2	270	gGa/gAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419837	41419837	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	83	449	0	ENST00000373198.4:c.484C>T	p.Gln162Ter	p.Q162*	ENST00000373198	NM_133170.3	162	Cag/Tag																																																																														
ATR	545	MSKCC	GRCh37	3	142204079	142204079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	112	652	0	ENST00000350721.4:c.6124C>T	p.Leu2042Phe	p.L2042F	ENST00000350721	NM_001184.3	2042	Ctt/Ttt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001422	29001422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	62	336	0	ENST00000282397.4:c.1310C>T	p.Ser437Leu	p.S437L	ENST00000282397	NM_002019.4	437	tCg/tTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	104	535	0	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244913	123244913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	106	831	2	ENST00000358487.5:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000358487	NM_000141.4	731	Gaa/Aaa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78921067	78921067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	149	768	0	ENST00000306801.3:c.3181C>T	p.His1061Tyr	p.H1061Y	ENST00000306801	NM_020761.2	1061	Cac/Tac																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164451	36164451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	38	283	0	ENST00000300305.3:c.1424C>T	p.Ala475Val	p.A475V	ENST00000300305		475	gCc/gTc																																																																														
BTK	695	MSKCC	GRCh37	X	100608325	100608325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	124	325	0	ENST00000308731.7:c.1765G>A	p.Glu589Lys	p.E589K	ENST00000308731	NM_000061.2	589	Gaa/Aaa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130427	29130427	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	115	716	1	ENST00000328354.6:c.283C>T	p.Arg95Ter	p.R95*	ENST00000328354	NM_007194.3	95	Cga/Tga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965761	25965761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	137	806	1	ENST00000435504.4:c.3445C>T	p.Arg1149Cys	p.R1149C	ENST00000435504		1149	Cgt/Tgt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508316	106508316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	46	334	0	ENST00000359195.3:c.310G>A	p.Gly104Arg	p.G104R	ENST00000359195	NM_002649.2	104	Ggg/Agg																																																																														
TP63	8626	MSKCC	GRCh37	3	189587161	189587161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	121	522	0	ENST00000264731.3:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000264731	NM_003722.4	393	cGa/cAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28919595	28919595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	145	652	2	ENST00000282397.4:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000282397	NM_002019.4	781	cGa/cAa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572484	95572484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	104	453	0	ENST00000343455.3:c.2881C>T	p.Pro961Ser	p.P961S	ENST00000343455	NM_177438.2	961	Cct/Tct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412267	139412267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	131	898	1	ENST00000277541.6:c.1378C>T	p.Pro460Ser	p.P460S	ENST00000277541	NM_017617.3	460	Ccg/Tcg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467511	66467511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	50	386	0	ENST00000273854.3:c.758C>T	p.Ser253Phe	p.S253F	ENST00000273854	NM_004439.5	253	tCc/tTc																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612764	228612764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	108	712	1	ENST00000366696.1:c.263C>T	p.Ser88Leu	p.S88L	ENST00000366696	NM_003493.2	88	tCg/tTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133225525	133225525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	105	592	0	ENST00000320574.5:c.4139C>T	p.Ser1380Leu	p.S1380L	ENST00000320574	NM_006231.2	1380	tCg/tTg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195371	102195371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	84	527	0	ENST00000263464.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000263464	NM_001165.4	44	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	209	480	2				ENST00000310581	NM_198253.2																																																																																
TET1	80312	MSKCC	GRCh37	10	70405194	70405194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	102	639	0	ENST00000373644.4:c.2708C>T	p.Ala903Val	p.A903V	ENST00000373644	NM_030625.2	903	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	86	590	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911606	134911606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	80	549	0	ENST00000398015.3:c.2071C>T	p.Arg691Trp	p.R691W	ENST00000398015	NM_004441.4	691	Cgg/Tgg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347177	89347177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	61	590	0	ENST00000301030.4:c.5773C>T	p.Pro1925Ser	p.P1925S	ENST00000301030	NM_001256183.1	1925	Ccc/Tcc																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	121	835	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432368	432368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	59	199	0	ENST00000399788.2:c.2155C>T	p.Arg719Cys	p.R719C	ENST00000399788	NM_001042603.1	719	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431691	49431691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	198	740	0	ENST00000301067.7:c.9448C>T	p.Leu3150Phe	p.L3150F	ENST00000301067	NM_003482.3	3150	Ctt/Ttt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30099969	30099969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	156	475	1	ENST00000331968.5:c.1651G>A	p.Gly551Ser	p.G551S	ENST00000331968	NM_002742.2	551	Ggt/Agt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068057	94068057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	74	361	0	ENST00000369303.4:c.905C>T	p.Ser302Phe	p.S302F	ENST00000369303	NM_004440.3	302	tCt/tTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246058	41246058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	124	750	0	ENST00000357654.3:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000357654	NM_007294.3	497	cCc/cTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557417	95557417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	94	506	0	ENST00000343455.3:c.5557C>T	p.Pro1853Ser	p.P1853S	ENST00000343455	NM_177438.2	1853	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028124	69028124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	123	808	0	ENST00000288368.4:c.3283G>A	p.Glu1095Lys	p.E1095K	ENST00000288368	NM_024870.2	1095	Gaa/Aaa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876497	35876497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	187	631	0	ENST00000303115.3:c.1289C>T	p.Pro430Leu	p.P430L	ENST00000303115	NM_002185.3	430	cCa/cTa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976766	2976766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	98	830	1	ENST00000396946.4:c.1246G>A	p.Glu416Lys	p.E416K	ENST00000396946	NM_032415.4	416	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285171	15285171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	158	898	0	ENST00000263388.2:c.4444G>A	p.Gly1482Ser	p.G1482S	ENST00000263388	NM_000435.2	1482	Ggc/Agc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41818301	41818301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	14	29	0	ENST00000373198.4:c.73G>A	p.Ala25Thr	p.A25T	ENST00000373198	NM_133170.3	25	Gct/Act																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727078	40727078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	66	541	0	ENST00000373198.4:c.3886G>A	p.Glu1296Lys	p.E1296K	ENST00000373198	NM_133170.3	1296	Gag/Aag																																																																														
ALK	238	MSKCC	GRCh37	2	29416658	29416658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	126	456	0	ENST00000389048.3:c.4295G>A	p.Arg1432Gln	p.R1432Q	ENST00000389048	NM_004304.4	1432	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295220	1295221	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	110	430	1				ENST00000310581	NM_198253.2																																																																																
PTCH1	5727	MSKCC	GRCh37	9	98209694	98209694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	108	679	0	ENST00000331920.6:c.3844C>T	p.Pro1282Ser	p.P1282S	ENST00000331920	NM_000264.3	1282	Ccg/Tcg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041782	14041782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	94	520	1	ENST00000311895.7:c.2329C>T	p.Gln777Ter	p.Q777*	ENST00000311895	NM_005236.2	777	Cag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68972955	68972955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141759315		P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	98	564	0	ENST00000288368.4:c.1280G>A	p.Arg427Lys	p.R427K	ENST00000288368	NM_024870.2	427	aGg/aAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432350	49432350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	157	812	0	ENST00000301067.7:c.8789C>T	p.Pro2930Leu	p.P2930L	ENST00000301067	NM_003482.3	2930	cCc/cTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129850	69129850	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	36	264	0	ENST00000288368.4:c.4605-1G>A		p.X1535_splice	ENST00000288368	NM_024870.2	1535																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88678469	88678469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	194	698	0	ENST00000360948.2:c.1067G>A	p.Gly356Glu	p.G356E	ENST00000360948	NM_001012338.2	356	gGa/gAa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62293892	62293892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	139	859	1	ENST00000508582.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000508582		154	cCc/cTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459889	149459890	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	107	750	1	ENST00000286301.3:c.317_318delinsAA	p.Arg106Gln	p.R106Q	ENST00000286301	NM_005211.3	106	cGG/cAA																																																																														
TERT	7015	MSKCC	GRCh37	5	1293686	1293686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	306	821	0	ENST00000310581.5:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000310581	NM_198253.2	439	Gag/Aag																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38148059	38148059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	159	837	1	ENST00000317025.8:c.3052C>T	p.Pro1018Ser	p.P1018S	ENST00000317025	NM_023034.1	1018	Cct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29560226	29560226	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	47	292	0	ENST00000358273.4:c.3703C>T	p.Gln1235Ter	p.Q1235*	ENST00000358273	NM_001042492.2	1235	Cag/Tag																																																																														
MPL	4352	MSKCC	GRCh37	1	43804995	43804995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	72	529	0	ENST00000372470.3:c.445G>A	p.Glu149Lys	p.E149K	ENST00000372470	NM_005373.2	149	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450321	50450321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	104	626	1	ENST00000331340.3:c.505G>A	p.Gly169Arg	p.G169R	ENST00000331340	NM_006060.4	169	Ggg/Agg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641222	12641222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	222	567	0	ENST00000251849.4:c.1076C>T	p.Ser359Phe	p.S359F	ENST00000251849	NM_002880.3	359	tCt/tTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968135	68968135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	113	664	0	ENST00000288368.4:c.1164G>A	p.Met388Ile	p.M388I	ENST00000288368	NM_024870.2	388	atG/atA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11316114	11316114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	111	586	0	ENST00000361445.4:c.640C>T	p.Arg214Cys	p.R214C	ENST00000361445	NM_004958.3	214	Cgt/Tgt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317158	11317159	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	194	683	2	ENST00000361445.4:c.335_336delinsAA	p.Arg112Gln	p.R112Q	ENST00000361445	NM_004958.3	112	cGG/cAA																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260090	16260090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	110	635	0	ENST00000375759.3:c.7355C>T	p.Ser2452Phe	p.S2452F	ENST00000375759	NM_015001.2	2452	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260137	16260138	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	83	581	0	ENST00000375759.3:c.7402_7403delinsAT	p.Pro2468Ile	p.P2468I	ENST00000375759	NM_015001.2	2468	CCc/ATc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28607287	28607287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	85	531	0	ENST00000253063.3:c.1417C>T	p.Arg473Cys	p.R473C	ENST00000253063	NM_031459.4	473	Cgt/Tgt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163295953	163295953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	249	793	0	ENST00000271452.3:c.112C>T	p.Pro38Ser	p.P38S	ENST00000271452	NM_145697.2	38	Cca/Tca																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245927428	245927428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	117	635	0	ENST00000388985.4:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000388985		367	cCc/cTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115958	8115958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	56	399	0	ENST00000346208.3:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000346208		435	cCc/cTc																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112769042	112769042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	125	631	1	ENST00000369452.4:c.1321C>T	p.Pro441Ser	p.P441S	ENST00000369452	NM_007373.3	441	Ccc/Tcc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	129	746	0	ENST00000543371.1:c.1480C>T	p.Pro494Ser	p.P494S	ENST00000543371	NM_001198531.1	494	Ccc/Tcc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123353275	123353276	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	304	686	1	ENST00000358487.5:c.56_57delinsTT	p.Ser19Phe	p.S19F	ENST00000358487	NM_000141.4	19	tCC/tTT																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575553	64575553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	81	622	0	ENST00000337652.1:c.479C>T	p.Ser160Phe	p.S160F	ENST00000337652	NM_130803.2	160	tCc/tTc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195580	102195580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	107	545	0	ENST00000263464.3:c.340C>T	p.Pro114Ser	p.P114S	ENST00000263464	NM_001165.4	114	Cct/Tct																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195928	102195928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	70	394	0	ENST00000263464.3:c.688C>T	p.Pro230Ser	p.P230S	ENST00000263464	NM_001165.4	230	Ccc/Tcc																																																																														
ATM	472	MSKCC	GRCh37	11	108123552	108123552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	204	429	0	ENST00000278616.4:c.1811C>T	p.Pro604Leu	p.P604L	ENST00000278616	NM_000051.3	604	cCt/cTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118363817	118363817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	211	506	0	ENST00000534358.1:c.5050C>T	p.Pro1684Ser	p.P1684S	ENST00000534358	NM_005933.3	1684	Cct/Tct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376905	118376905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	116	425	0	ENST00000534358.1:c.10298C>T	p.Pro3433Leu	p.P3433L	ENST00000534358	NM_005933.3	3433	cCc/cTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245315	46245315	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	196	568	0	ENST00000334344.6:c.3409T>G	p.Ser1137Ala	p.S1137A	ENST00000334344	NM_152641.2	1137	Tca/Gca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246051	46246051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	77	494	0	ENST00000334344.6:c.4145C>T	p.Ser1382Phe	p.S1382F	ENST00000334344	NM_152641.2	1382	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425497	49425497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	285	887	0	ENST00000301067.7:c.12991C>T	p.Pro4331Ser	p.P4331S	ENST00000301067	NM_003482.3	4331	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440417	49440417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	251	761	0	ENST00000301067.7:c.4393C>T	p.Pro1465Ser	p.P1465S	ENST00000301067	NM_003482.3	1465	Ccc/Tcc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480058	50480058	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	224	684	1	ENST00000394963.4:c.292C>T	p.Gln98Ter	p.Q98*	ENST00000394963	NM_003076.4	98	Cag/Tag																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888307	112888308	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	141	492	1	ENST00000351677.2:c.323_324delinsTT	p.Thr108Ile	p.T108I	ENST00000351677	NM_002834.3	108	aCC/aTT																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563270	21563271	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	93	890	4	ENST00000382592.4:c.648_649delinsTT	p.Pro217Ser	p.P217S	ENST00000382592	NM_014572.2	216	ttCCcc/ttTTcc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623580	28623580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	218	536	0	ENST00000241453.7:c.977G>T	p.Gly326Val	p.G326V	ENST00000241453	NM_004119.2	326	gGa/gTa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28896945	28896945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	112	484	0	ENST00000282397.4:c.2935G>A	p.Asp979Asn	p.D979N	ENST00000282397	NM_002019.4	979	Gat/Aat																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041063	29041063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	75	543	0	ENST00000282397.4:c.365C>T	p.Ser122Phe	p.S122F	ENST00000282397	NM_002019.4	122	tCt/tTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041220	29041220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	100	607	1	ENST00000282397.4:c.208G>A	p.Glu70Lys	p.E70K	ENST00000282397	NM_002019.4	70	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915094	32915094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	136	645	0	ENST00000380152.3:c.6602C>T	p.Ser2201Phe	p.S2201F	ENST00000380152		2201	tCt/tTt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504536	103504536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	91	401	0	ENST00000355739.4:c.157C>T	p.Pro53Ser	p.P53S	ENST00000355739	NM_000123.3	53	Cct/Tct																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434566	110434566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	302	681	0	ENST00000375856.3:c.3835G>A	p.Gly1279Arg	p.G1279R	ENST00000375856	NM_003749.2	1279	Gga/Aga																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609791	81609791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	74	437	0	ENST00000298171.2:c.1389G>A	p.Met463Ile	p.M463I	ENST00000298171	NM_000369.2	463	atG/atA																																																																														
AKT1	207	MSKCC	GRCh37	14	105239692	105239693	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	127	743	0	ENST00000349310.3:c.852_853delinsAA	p.Asp285Asn	p.D285N	ENST00000349310	NM_001014432.1	284	aaGGac/aaAAac																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43730541	43730541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	87	496	0	ENST00000382044.4:c.3172C>T	p.Pro1058Ser	p.P1058S	ENST00000382044	NM_001141980.1	1058	Ccc/Tcc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472571	88472571	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	79	575	0	ENST00000360948.2:c.1984C>T	p.Gln662Ter	p.Q662*	ENST00000360948	NM_001012338.2	662	Cag/Tag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99486209	99486210	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	231	679	0	ENST00000268035.6:c.3515_3516delinsAA	p.Gly1172Glu	p.G1172E	ENST00000268035	NM_000875.3	1172	gGG/gAA																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658656	3658656	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	172	934	0	ENST00000294008.3:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000294008	NM_032444.2	104	Caa/Taa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857769	9857769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	97	506	0	ENST00000330684.3:c.3632C>T	p.Ser1211Phe	p.S1211F	ENST00000330684	NM_001134407.1	1211	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934575	9934575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	110	631	1	ENST00000330684.3:c.1580C>T	p.Pro527Leu	p.P527L	ENST00000330684	NM_001134407.1	527	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984854	9984854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	91	562	1	ENST00000330684.3:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000330684	NM_001134407.1	371	Gaa/Aaa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865762	56865762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	56	358	0	ENST00000308159.5:c.1094C>T	p.Pro365Leu	p.P365L	ENST00000308159	NM_014669.4	365	cCa/cTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72863732	72863732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	102	536	1	ENST00000268489.5:c.3475C>T	p.Pro1159Ser	p.P1159S	ENST00000268489	NM_006885.3	1159	Ccc/Tcc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81990322	81990322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	203	479	0	ENST00000359376.3:c.3593C>T	p.Ser1198Phe	p.S1198F	ENST00000359376	NM_002661.3	1198	tCc/tTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351211	89351211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	123	736	0	ENST00000301030.4:c.1739C>T	p.Ser580Phe	p.S580F	ENST00000301030	NM_001256183.1	580	tCc/tTc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89831350	89831350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	98	679	0	ENST00000389301.3:c.2726C>T	p.Ser909Phe	p.S909F	ENST00000389301	NM_000135.2	909	tCt/tTt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7976480	7976480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	92	549	0	ENST00000319144.4:c.1912G>A	p.Glu638Lys	p.E638K	ENST00000319144	NM_001139.2	638	Gag/Aag																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980418	7980418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	132	767	0	ENST00000319144.4:c.1165G>A	p.Glu389Lys	p.E389K	ENST00000319144	NM_001139.2	389	Gag/Aag																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980483	7980483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	192	578	0	ENST00000319144.4:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000319144	NM_001139.2	367	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29546050	29546050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	124	610	1	ENST00000358273.4:c.1555C>T	p.Gln519Ter	p.Q519*	ENST00000358273	NM_001042492.2	519	Caa/Taa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40857185	40857185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	84	360	1	ENST00000428826.2:c.1856C>T	p.Pro619Leu	p.P619L	ENST00000428826		619	cCc/cTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63537665	63537665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	98	552	0	ENST00000307078.5:c.967C>T	p.Pro323Ser	p.P323S	ENST00000307078	NM_004655.3	323	Cct/Tct																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099207	4099207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	78	570	0	ENST00000262948.5:c.911C>T	p.Pro304Leu	p.P304L	ENST00000262948	NM_030662.3	304	cCc/cTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7170620	7170620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	268	697	0	ENST00000302850.5:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000302850	NM_000208.2	471	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281493	15281493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	71	771	1	ENST00000263388.2:c.4880G>A	p.Arg1627Gln	p.R1627Q	ENST00000263388	NM_000435.2	1627	cGg/cAg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376236	15376237	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	83	663	1	ENST00000263377.2:c.777_778delinsTT	p.Pro260Ser	p.P260S	ENST00000263377	NM_058243.2	259	ccCCca/ccTTca																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945512	17945512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	193	652	0	ENST00000458235.1:c.2218G>A	p.Asp740Asn	p.D740N	ENST00000458235	NM_000215.3	740	Gac/Aac																																																																														
UPF1	5976	MSKCC	GRCh37	19	18963074	18963074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	122	832	3	ENST00000262803.5:c.941C>T	p.Ala314Val	p.A314V	ENST00000262803	NM_002911.3	314	gCc/gTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211793	36211793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	135	966	0	ENST00000222270.7:c.1544C>T	p.Pro515Leu	p.P515L	ENST00000222270	NM_014727.1	515	cCc/cTc																																																																														
AXL	558	MSKCC	GRCh37	19	41744411	41744411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	117	815	0	ENST00000301178.4:c.1031G>A	p.Arg344Gln	p.R344Q	ENST00000301178	NM_021913.4	344	cGg/cAg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383212	42383212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	125	753	0	ENST00000221972.3:c.232C>T	p.Pro78Ser	p.P78S	ENST00000221972	NM_021601.3	78	Cct/Tct																																																																														
RRAS	6237	MSKCC	GRCh37	19	50138856	50138856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	134	1016	0	ENST00000246792.3:c.634G>A	p.Gly212Ser	p.G212S	ENST00000246792	NM_006270.3	212	Ggc/Agc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906319	50906319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	73	624	0	ENST00000440232.2:c.980C>T	p.Pro327Leu	p.P327L	ENST00000440232	NM_002691.3	327	cCt/cTt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909526	50909526	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	240	740	0	ENST00000440232.2:c.1330C>G	p.Arg444Gly	p.R444G	ENST00000440232	NM_002691.3	444	Cgg/Ggg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967069	25967069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	72	562	0	ENST00000435504.4:c.2137G>A	p.Gly713Ser	p.G713S	ENST00000435504		713	Ggc/Agc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47600601	47600601	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	92	386	0	ENST00000263735.4:c.77-1G>A		p.X26_splice	ENST00000263735	NM_002354.2	26																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178096559	178096559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	80	370	0	ENST00000397062.3:c.772C>T	p.Leu258Phe	p.L258F	ENST00000397062	NM_006164.4	258	Ctc/Ttc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285221	212285221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	92	537	1	ENST00000342788.4:c.3080C>T	p.Ala1027Val	p.A1027V	ENST00000342788	NM_005235.2	1027	gCt/gTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530138	212530138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	80	418	0	ENST00000342788.4:c.1781C>T	p.Pro594Leu	p.P594L	ENST00000342788	NM_005235.2	594	cCa/cTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578317	212578318	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	89	527	1	ENST00000342788.4:c.939_940delinsAA	p.Met313_Glu314delinsIleLys	p.M313_E314delinsIK	ENST00000342788	NM_005235.2	313	atGGaa/atAAaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812299	212812299	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	77	418	0	ENST00000342788.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000342788	NM_005235.2	93	Cag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	213403230	213403230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	65	545	1	ENST00000342788.4:c.25G>A	p.Val9Ile	p.V9I	ENST00000342788	NM_005235.2	9	Gtc/Atc																																																																														
BARD1	580	MSKCC	GRCh37	2	215593663	215593664	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	53	484	1	ENST00000260947.4:c.2070_2071delinsTT	p.Leu691Phe	p.L691F	ENST00000260947	NM_000465.2	690	aaCCtt/aaTTtt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022319	31022319	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	191	446	1	ENST00000375687.4:c.1804G>T	p.Glu602Ter	p.E602*	ENST00000375687	NM_015338.5	602	Gag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770600	40770600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	73	518	1	ENST00000373198.4:c.2782G>A	p.Glu928Lys	p.E928K	ENST00000373198	NM_133170.3	928	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980762	40980762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	60	508	0	ENST00000373198.4:c.1724G>A	p.Gly575Glu	p.G575E	ENST00000373198	NM_133170.3	575	gGg/gAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980798	40980798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	114	582	0	ENST00000373198.4:c.1688C>T	p.Ser563Phe	p.S563F	ENST00000373198	NM_133170.3	563	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385263	41385263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	80	587	0	ENST00000373198.4:c.698G>A	p.Arg233Lys	p.R233K	ENST00000373198	NM_133170.3	233	aGg/aAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514555	41514555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	110	572	0	ENST00000373198.4:c.106G>A	p.Glu36Lys	p.E36K	ENST00000373198	NM_133170.3	36	Gag/Aag																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62320915	62320916	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	117	927	2	ENST00000508582.2:c.2011_2012delinsTT	p.Pro671Leu	p.P671L	ENST00000508582		671	CCg/TTg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42860396	42860396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	108	707	1	ENST00000398585.3:c.481G>A	p.Gly161Ser	p.G161S	ENST00000398585	NM_001135099.1	161	Ggt/Agt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458479	12458479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	121	767	1	ENST00000287820.6:c.1096G>A	p.Gly366Arg	p.G366R	ENST00000287820	NM_015869.4	366	Ggg/Agg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927489	49927489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	123	676	1	ENST00000296474.3:c.3815C>T	p.Ser1272Leu	p.S1272L	ENST00000296474	NM_002447.2	1272	tCa/tTa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643906	52643906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	83	586	0	ENST00000394830.3:c.1990G>A	p.Glu664Lys	p.E664K	ENST00000394830	NM_018313.4	664	Gag/Aag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247495	71247495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	91	549	1	ENST00000318789.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000318789	NM_032682.5	13	gGt/gAt																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1918742	1918742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	108	515	0	ENST00000382891.5:c.905C>T	p.Pro302Leu	p.P302L	ENST00000382891	NM_133335.3	302	cCc/cTc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1957419	1957419	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	56	487	0	ENST00000382891.5:c.2519-1G>A		p.X840_splice	ENST00000382891	NM_133335.3	840																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55139787	55139788	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	96	635	0	ENST00000257290.5:c.1448_1449delinsTT	p.Thr483Ile	p.T483I	ENST00000257290	NM_006206.4	483	aCC/aTT																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31401661	31401661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	91	415	0	ENST00000344624.3:c.4003C>T	p.Pro1335Ser	p.P1335S	ENST00000344624		1335	Ccc/Tcc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873668	35873669	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	67	435	1	ENST00000303115.3:c.624_625delinsTT	p.Pro209Ser	p.P209S	ENST00000303115	NM_002185.3	208	atCCct/atTTct																																																																														
APC	324	MSKCC	GRCh37	5	112179783	112179783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	67	352	0	ENST00000257430.4:c.8492C>T	p.Pro2831Leu	p.P2831L	ENST00000257430	NM_000038.5	2831	cCt/cTt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149501548	149501548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	110	642	2	ENST00000261799.4:c.2239G>A	p.Glu747Lys	p.E747K	ENST00000261799	NM_002609.3	747	Gag/Aag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180055892	180055892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	72	569	1	ENST00000261937.6:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000261937	NM_182925.4	365	Gag/Aag																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271243	26271243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	81	538	0	ENST00000305910.3:c.370G>A	p.Asp124Asn	p.D124N	ENST00000305910	NM_003534.2	124	Gac/Aac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680247	30680247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	108	840	0	ENST00000376406.3:c.1472C>T	p.Pro491Leu	p.P491L	ENST00000376406	NM_014641.2	491	cCt/cTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168773	32168773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	128	789	0	ENST00000375023.3:c.4150G>A	p.Val1384Ile	p.V1384I	ENST00000375023	NM_004557.3	1384	Gtc/Atc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178606	32178606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	98	757	0	ENST00000375023.3:c.2788C>T	p.His930Tyr	p.H930Y	ENST00000375023	NM_004557.3	930	Cac/Tac																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793635	89793635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	92	485	0	ENST00000336032.3:c.704T>C	p.Phe235Ser	p.F235S	ENST00000336032	NM_006813.2	235	tTt/tCt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120714	94120714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	82	551	0	ENST00000369303.4:c.337C>T	p.Pro113Ser	p.P113S	ENST00000369303	NM_004440.3	113	Cct/Tct																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137525627	137525627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	151	504	0	ENST00000367739.4:c.388C>T	p.Pro130Ser	p.P130S	ENST00000367739	NM_000416.2	130	Cct/Tct																																																																														
PMS2	5395	MSKCC	GRCh37	7	6045527	6045527	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	48	189	0	ENST00000265849.7:c.159T>A	p.Asn53Lys	p.N53K	ENST00000265849	NM_000535.5	53	aaT/aaA																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729498	41729498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	95	656	0	ENST00000242208.4:c.1031G>A	p.Gly344Asp	p.G344D	ENST00000242208	NM_002192.2	344	gGc/gAc																																																																														
CDK6	1021	MSKCC	GRCh37	7	92252399	92252399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	62	313	0	ENST00000265734.4:c.649C>T	p.Pro217Ser	p.P217S	ENST00000265734	NM_001259.6	217	Cct/Tct																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508121	106508122	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	26	227	0	ENST00000359195.3:c.115_116delinsTT	p.Pro39Phe	p.P39F	ENST00000359195	NM_002649.2	39	CCc/TTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515171	106515171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	99	508	0	ENST00000359195.3:c.2314G>A	p.Glu772Lys	p.E772K	ENST00000359195	NM_002649.2	772	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116340318	116340318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	81	347	0	ENST00000397752.3:c.1180C>T	p.His394Tyr	p.H394Y	ENST00000397752	NM_000245.2	394	Cat/Tat																																																																														
RHEB	6009	MSKCC	GRCh37	7	151181890	151181890	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	71	315	0	ENST00000262187.5:c.125C>T	p.Thr42Ile	p.T42I	ENST00000262187	NM_005614.3	42	aCt/aTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151849837	151849837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	60	395	0	ENST00000262189.6:c.12479C>T	p.Ser4160Phe	p.S4160F	ENST00000262189	NM_170606.2	4160	tCt/tTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878140	151878140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	101	531	0	ENST00000262189.6:c.6805C>T	p.Pro2269Ser	p.P2269S	ENST00000262189	NM_170606.2	2269	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	68972987	68972987	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	71	495	0	ENST00000288368.4:c.1312T>A	p.Leu438Ile	p.L438I	ENST00000288368	NM_024870.2	438	Tta/Ata																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020480	69020480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	131	723	0	ENST00000288368.4:c.2852C>T	p.Ser951Leu	p.S951L	ENST00000288368	NM_024870.2	951	tCa/tTa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964515	70964515	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148573764		P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	127	630	1	ENST00000276594.2:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000276594	NM_024504.3	505	Cgc/Tgc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978697	70978697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	129	762	0	ENST00000276594.2:c.956G>A	p.Gly319Glu	p.G319E	ENST00000276594	NM_024504.3	319	gGa/gAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5022020	5022020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	109	500	0	ENST00000381652.3:c.33G>A	p.Met11Ile	p.M11I	ENST00000381652	NM_004972.3	11	atG/atA																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054672	5054672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	82	451	1	ENST00000381652.3:c.724C>T	p.Gln242Ter	p.Q242*	ENST00000381652	NM_004972.3	242	Caa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485286	8485286	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	103	608	0	ENST00000356435.5:c.3094A>G	p.Thr1032Ala	p.T1032A	ENST00000356435		1032	Act/Gct																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966652	36966652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	72	537	0	ENST00000358127.4:c.674G>A	p.Arg225Gln	p.R225Q	ENST00000358127	NM_001280556.1	225	cGg/cAg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931969	39931969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	154	402	1	ENST00000378444.4:c.2630C>T	p.Thr877Ile	p.T877I	ENST00000378444	NM_001123385.1	877	aCc/aTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410921	63410921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	124	339	1	ENST00000330258.3:c.2246C>T	p.Ser749Leu	p.S749L	ENST00000330258	NM_152424.3	749	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420292	49420292	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	222	662	1	ENST00000301067.7:c.15457del	p.Arg5153GlyfsTer10	p.R5153Gfs*10	ENST00000301067	NM_003482.3	5153	Cgg/gg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	117	338	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	48	371	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	48	371	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	48	371	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045000	47045000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	139	304	1	ENST00000329236.7:c.2092C>T	p.Arg698Trp	p.R698W	ENST00000329236	NM_001204466.1	698	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089755	27089755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	50	394	0	ENST00000324856.7:c.2711C>T	p.Ala904Val	p.A904V	ENST00000324856	NM_006015.4	904	gCt/gTt																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498729	246498729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	42	411	0	ENST00000388985.4:c.276C>A	p.Ser92Arg	p.S92R	ENST00000388985		92	agC/agA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906987	32906987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	64	322	0	ENST00000380152.3:c.1372C>G	p.Pro458Ala	p.P458A	ENST00000380152		458	Cca/Gca																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082273	16082279	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGAC	CCCGGAC	-			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	56	564	0	ENST00000281043.3:c.87_93del	p.Tyr29Ter	p.Y29*	ENST00000281043	NM_005378.4	29	taCCCGGAC/ta																																																																														
PMS1	5378	MSKCC	GRCh37	2	190742054	190742054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	43	421	0	ENST00000441310.2:c.2691C>G	p.Ile897Met	p.I897M	ENST00000441310	NM_000534.4	897	atC/atG																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274699	198274699	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	37	277	0	ENST00000335508.6:c.699T>A	p.Asp233Glu	p.D233E	ENST00000335508	NM_012433.2	233	gaT/gaA																																																																														
AURKA	6790	MSKCC	GRCh37	20	54945551	54945551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	78	681	0	ENST00000312783.6:c.1019G>A	p.Arg340Lys	p.R340K	ENST00000312783	NM_198436.1	340	aGa/aAa																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27840010	27840010	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	31	352	1	ENST00000328488.2:c.84G>C	p.Lys28Asn	p.K28N	ENST00000328488	NM_003533.2	28	aaG/aaC																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983144	149983144	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	54	435	0	ENST00000253339.5:c.3114T>A	p.Asn1038Lys	p.N1038K	ENST00000253339		1038	aaT/aaA																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923022	39923022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	51	212	0	ENST00000378444.4:c.3686C>A	p.Pro1229His	p.P1229H	ENST00000378444	NM_001123385.1	1229	cCt/cAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	434	440	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0029919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	924	473	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562133	21562133	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	268	852	0	ENST00000382592.4:c.1786A>T	p.Ser596Cys	p.S596C	ENST00000382592	NM_014572.2	596	Agc/Tgc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169977787	169977787	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1309	193	529	0	ENST00000295797.4:c.254A>T	p.Glu85Val	p.E85V	ENST00000295797	NM_002740.5	85	gAg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112164593	112164596	+	frameshift_variant	Frame_Shift_Del	DEL	ATGT	ATGT	-			P-0029919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	214	268	0	ENST00000257430.4:c.1668_1671del	p.Asp556GlufsTer13	p.D556Efs*13	ENST00000257430	NM_000038.5	556	gATGTa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	151	537	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	120	436	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	120	436	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	120	436	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78899272	78899272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	126	452	0	ENST00000306801.3:c.2911G>A	p.Val971Ile	p.V971I	ENST00000306801	NM_020761.2	971	Gtc/Atc																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349280	11349280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	105	353	0	ENST00000332029.2:c.56C>T	p.Pro19Leu	p.P19L	ENST00000332029	NM_003745.1	19	cCc/cTc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729696	162729696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	132	484	0	ENST00000367921.3:c.782A>G	p.Asn261Ser	p.N261S	ENST00000367921	NM_006182.2	261	aAc/aGc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741450	17741450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	363	614	0	ENST00000250003.3:c.121C>A	p.Arg41Ser	p.R41S	ENST00000250003	NM_002478.4	41	Cgc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427998	49427998	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	153	544	0	ENST00000301067.7:c.10592A>C	p.Gln3531Pro	p.Q3531P	ENST00000301067	NM_003482.3	3531	cAg/cCg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95563052	95563052	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	40	191	0	ENST00000343455.3:c.4207-2A>T		p.X1403_splice	ENST00000343455	NM_177438.2	1403																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11138559	11138559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	43	587	0	ENST00000344626.4:c.3315G>A	p.Met1105Ile	p.M1105I	ENST00000344626	NM_003072.3	1105	atG/atA																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271980	15271981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	142	689	1	ENST00000263388.2:c.6458dup	p.Gly2154TrpfsTer88	p.G2154Wfs*88	ENST00000263388	NM_000435.2	2153	cct/ccCt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794462	242794462	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	187	699	1	ENST00000334409.5:c.480del	p.Arg161GlyfsTer24	p.R161Gfs*24	ENST00000334409	NM_005018.2	160	ccC/cc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46276030	46276030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	137	577	0	ENST00000371998.3:c.3466C>T	p.Arg1156Ter	p.R1156*	ENST00000371998		1156	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670403	134670403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	96	418	0	ENST00000398015.3:c.314C>T	p.Ser105Phe	p.S105F	ENST00000398015	NM_004441.4	105	tCc/tTc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873595	35873596	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0029959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	101	225	0	ENST00000303115.3:c.551_552delinsAA	p.Ser184Ter	p.S184*	ENST00000303115	NM_002185.3	184	tCC/tAA																																																																														
TP53	7157	MSKCC	GRCh37	17	7573991	7573991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	337	731	0	ENST00000269305.4:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	346	Gag/Tag																																																																														
SDHC	6391	MSKCC	GRCh37	1	161293406	161293406	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0030010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	84	402	0	ENST00000367975.2:c.23A>G	p.His8Arg	p.H8R	ENST00000367975	NM_003001.3	8	cAc/cGc																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724421	112724421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	69	660	0	ENST00000369452.4:c.305C>T	p.Ser102Leu	p.S102L	ENST00000369452	NM_007373.3	102	tCa/tTa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618489	37618498	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGACCCCC	GGTGACCCCC	-			P-0030010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	283	549	0	ENST00000447079.4:c.166_175del	p.Val56LysfsTer33	p.V56Kfs*33	ENST00000447079	NM_015083.1	55	ttGGTGACCCCC/tt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223139	36223139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	107	949	0	ENST00000222270.7:c.5689C>T	p.His1897Tyr	p.H1897Y	ENST00000222270	NM_014727.1	1897	Cac/Tac																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851574	134851574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	56	412	0	ENST00000398015.3:c.980G>A	p.Arg327His	p.R327H	ENST00000398015	NM_004441.4	327	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	154	688	0	ENST00000269305.4:c.469del	p.Val157SerfsTer13	p.V157Sfs*13	ENST00000269305	NM_001126112.2	157	Gtc/tc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2225386	2225386	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0030023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	86	496	0	ENST00000398665.3:c.3597-1G>C		p.X1199_splice	ENST00000398665	NM_032482.2	1199																																																																															
LATS1	9113	MSKCC	GRCh37	6	149982897	149982897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	15	377	0	ENST00000253339.5:c.3361G>A	p.Glu1121Lys	p.E1121K	ENST00000253339		1121	Gag/Aag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518106	103518106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	72	230	2	ENST00000355739.4:c.2044G>A	p.Glu682Lys	p.E682K	ENST00000355739	NM_000123.3	682	Gaa/Aaa																																																																														
BCL10	8915	MSKCC	GRCh37	1	85741981	85741981	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0030084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	75	430	0	ENST00000370580.1:c.55G>C	p.Asp19His	p.D19H	ENST00000370580	NM_003921.4	19	Gac/Cac																																																																														
POLE	5426	MSKCC	GRCh37	12	133202708	133202708	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	65	356	0	ENST00000320574.5:c.6526T>A	p.Ser2176Thr	p.S2176T	ENST00000320574	NM_006231.2	2176	Tca/Aca																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440891	52440891	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0030084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	95	520	0	ENST00000460680.1:c.613A>T	p.Lys205Ter	p.K205*	ENST00000460680	NM_004656.3	205	Aag/Tag																																																																														
MGA	23269	MSKCC	GRCh37	15	42054030	42054030	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	50	206	0	ENST00000219905.7:c.7494del	p.Val2499TyrfsTer13	p.V2499Yfs*13	ENST00000219905	NM_001164273.1	2498	Aaa/aa																																																																														
MGA	23269	MSKCC	GRCh37	15	42054025	42054026	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGAAA			P-0030084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	55	225	0	ENST00000219905.7:c.7487_7488insCGAAA	p.Arg2497GlufsTer17	p.R2497Efs*17	ENST00000219905	NM_001164273.1	2496	ata/atCGAAAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	352	402	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040650	47040650	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	275	607	1	ENST00000329236.7:c.1051G>T	p.Glu351Ter	p.E351*	ENST00000329236	NM_001204466.1	351	Gag/Tag																																																																														
MITF	4286	MSKCC	GRCh37	3	70008548	70008548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	169	339	1	ENST00000352241.4:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000352241	NM_198159.2	380	Cgg/Tgg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39937125	39937125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	48	604	0	ENST00000378444.4:c.58G>T	p.Val20Phe	p.V20F	ENST00000378444	NM_001123385.1	20	Gtc/Ttc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17384726	17384726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	264	646	0	ENST00000359435.4:c.358G>A	p.Ala120Thr	p.A120T	ENST00000359435	NM_001033549.1	120	Gcc/Acc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11288961	11288961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	188	397	0	ENST00000361445.4:c.2794A>G	p.Ser932Gly	p.S932G	ENST00000361445	NM_004958.3	932	Agt/Ggt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563201	21563201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	267	679	0	ENST00000382592.4:c.718G>A	p.Glu240Lys	p.E240K	ENST00000382592	NM_014572.2	240	Gag/Aag																																																																														
ALK	238	MSKCC	GRCh37	2	29451888	29451889	+	missense_variant	Missense_Mutation	DNP	CG	CG	TC			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	256	643	1	ENST00000389048.3:c.2676_2677delinsGA	p.Gly893Arg	p.G893R	ENST00000389048	NM_004304.4	892	gcCGga/gcGAga																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719487	190719487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	103	197	0	ENST00000441310.2:c.1489G>T	p.Glu497Ter	p.E497*	ENST00000441310	NM_000534.4	497	Gag/Tag																																																																														
HGF	3082	MSKCC	GRCh37	7	81346604	81346604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	119	287	0	ENST00000222390.5:c.1349C>A	p.Pro450His	p.P450H	ENST00000222390	NM_000601.4	450	cCc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76920200	76920200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	133	273	0	ENST00000373344.5:c.3877G>T	p.Asp1293Tyr	p.D1293Y	ENST00000373344	NM_000489.3	1293	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	103	532	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	83	341	0				ENST00000310581	NM_198253.2																																																																																
B2M	567	MSKCC	GRCh37	15	45007620	45007620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	18	196	0	ENST00000558401.1:c.68-1G>T		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
HIST1H3B	8358	MSKCC	GRCh37	6	26032209	26032209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	103	243	0	ENST00000244661.2:c.80G>A	p.Arg27His	p.R27H	ENST00000244661	NM_003537.3	27	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	218	659	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	178	408	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	178	408	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	178	408	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	33	476	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
TET2	54790	MSKCC	GRCh37	4	106156747	106156747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs572712965		P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	70	419	0	ENST00000380013.4:c.1648C>T	p.Arg550Ter	p.R550*	ENST00000380013	NM_001127208.2	550	Cga/Tga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166773	32166773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1231739465		P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	101	655	0	ENST00000375023.3:c.4465C>T	p.Arg1489Ter	p.R1489*	ENST00000375023	NM_004557.3	1489	Cga/Tga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	92	552	3	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46738149	46738149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	37	386	1	ENST00000371975.4:c.1181G>A	p.Arg394Gln	p.R394Q	ENST00000371975	NM_003579.3	394	cGg/cAg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6441974	6441974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	342	477	0	ENST00000356142.4:c.533C>T	p.Ala178Val	p.A178V	ENST00000356142	NM_018890.3	178	gCg/gTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436686	110436686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	49	688	1	ENST00000375856.3:c.1715G>A	p.Arg572His	p.R572H	ENST00000375856	NM_003749.2	572	cGc/cAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023894	31023894	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201009558		P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	63	525	0	ENST00000375687.4:c.3379G>A	p.Asp1127Asn	p.D1127N	ENST00000375687	NM_015338.5	1127	Gat/Aat																																																																														
CD276	80381	MSKCC	GRCh37	15	73994829	73994829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	57	236	0	ENST00000318443.5:c.313G>A	p.Ala105Thr	p.A105T	ENST00000318443	NM_001024736.1	105	Gca/Aca																																																																														
B2M	567	MSKCC	GRCh37	15	45003775	45003775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	20	338	0	ENST00000558401.1:c.31G>C	p.Ala11Pro	p.A11P	ENST00000558401	NM_004048.2	11	Gcg/Ccg																																																																														
TEK	7010	MSKCC	GRCh37	9	27228299	27228299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	88	365	0	ENST00000380036.4:c.3296G>A	p.Arg1099Gln	p.R1099Q	ENST00000380036	NM_000459.3	1099	cGa/cAa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256566	115256566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	54	429	0	ENST00000369535.4:c.145G>A	p.Glu49Lys	p.E49K	ENST00000369535	NM_002524.4	49	Gaa/Aaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70404749	70404749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	49	540	0	ENST00000373644.4:c.2263A>C	p.Thr755Pro	p.T755P	ENST00000373644	NM_030625.2	755	Acc/Ccc																																																																														
TET1	80312	MSKCC	GRCh37	10	70406526	70406526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139453548		P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	46	662	0	ENST00000373644.4:c.4040C>T	p.Pro1347Leu	p.P1347L	ENST00000373644	NM_030625.2	1347	cCg/cTg																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94189446	94189446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	90	369	0	ENST00000323929.3:c.1559G>A	p.Arg520His	p.R520H	ENST00000323929	NM_005591.3	520	cGt/cAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375320	118375320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	75	295	0	ENST00000534358.1:c.8713C>T	p.Pro2905Ser	p.P2905S	ENST00000534358	NM_005933.3	2905	Cct/Tct																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244682	46244682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	43	495	0	ENST00000334344.6:c.2776G>A	p.Val926Ile	p.V926I	ENST00000334344	NM_152641.2	926	Gta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440041	49440041	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	66	549	0	ENST00000301067.7:c.4583+2T>C		p.X1528_splice	ENST00000301067	NM_003482.3	1528																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41134987	41134987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	22	222	0	ENST00000379561.5:c.641G>A	p.Arg214His	p.R214H	ENST00000379561	NM_002015.3	214	cGt/cAt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2106669	2106669	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142919353		P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	121	530	0	ENST00000219476.3:c.673G>A	p.Val225Met	p.V225M	ENST00000219476	NM_000548.3	225	Gtg/Atg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658551	3658551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	51	605	2	ENST00000294008.3:c.415G>T	p.Gly139Trp	p.G139W	ENST00000294008	NM_032444.2	139	Ggg/Tgg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11024560	11024560	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	90	429	0	ENST00000327064.4:c.677T>C	p.Val226Ala	p.V226A	ENST00000327064	NM_199141.1	226	gTg/gCg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350235	15350235	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	192	682	0	ENST00000263377.2:c.3544C>T	p.Gln1182Ter	p.Q1182*	ENST00000263377	NM_058243.2	1182	Cag/Tag																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46587863	46587863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	55	433	0	ENST00000263734.3:c.541C>T	p.Arg181Cys	p.R181C	ENST00000263734	NM_001430.4	181	Cgt/Tgt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198288689	198288689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	150	367	0	ENST00000335508.6:c.38C>T	p.Ala13Val	p.A13V	ENST00000335508	NM_012433.2	13	gCa/gTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480309	89480309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	17	195	0	ENST00000336596.2:c.2146G>A	p.Ala716Thr	p.A716T	ENST00000336596	NM_005233.5	716	Gcc/Acc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665110	182665110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	66	306	1	ENST00000292782.4:c.616C>T	p.Arg206Ter	p.R206*	ENST00000292782	NM_020640.2	206	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539488	187539488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	38	312	0	ENST00000441802.2:c.8252T>C	p.Phe2751Ser	p.F2751S	ENST00000441802	NM_005245.3	2751	tTt/tCt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750519	57750519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	40	449	0	ENST00000274289.3:c.1949G>T	p.Arg650Met	p.R650M	ENST00000274289	NM_006622.3	650	aGg/aTg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38172244	38172244	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	32	420	1	ENST00000317025.8:c.2163C>A	p.Cys721Ter	p.C721*	ENST00000317025	NM_023034.1	721	tgC/tgA																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15833909	15833909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	17	17	1	ENST00000307771.7:c.667G>A	p.Ala223Thr	p.A223T	ENST00000307771	NM_005089.3	223	Gca/Aca																																																																														
MED12	9968	MSKCC	GRCh37	X	70339247	70339273	+	inframe_deletion	In_Frame_Del	DEL	AAACAAGGTTTCAATAACCAGCCTGCT	AAACAAGGTTTCAATAACCAGCCTGCT	-			P-0030108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	164	550	0	ENST00000374080.3:c.124_150del	p.Lys42_Ala50del	p.K42_A50del	ENST00000374080		42	AAACAAGGTTTCAATAACCAGCCTGCT/-																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270508	98270508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	101	370	0	ENST00000331920.6:c.136G>T	p.Asp46Tyr	p.D46Y	ENST00000331920	NM_000264.3	46	Gac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	45	351	2				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	44	315	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	44	315	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981761	101981761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	84	425	0	ENST00000282441.5:c.182C>G	p.Ser61Trp	p.S61W	ENST00000282441	NM_001130145.2	61	tCg/tGg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	40	290	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108183205	108183205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	30	288	0	ENST00000278616.4:c.5986G>A	p.Glu1996Lys	p.E1996K	ENST00000278616	NM_000051.3	1996	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	44	315	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
YAP1	10413	MSKCC	GRCh37	11	101984923	101984923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	45	305	0	ENST00000282441.5:c.370C>G	p.Arg124Gly	p.R124G	ENST00000282441	NM_001130145.2	124	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	38	354	0	ENST00000263967.3:c.3145G>A	p.Gly1049Ser	p.G1049S	ENST00000263967	NM_006218.2	1049	Ggt/Agt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188187	32188187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	66	473	0	ENST00000375023.3:c.1154G>A	p.Arg385His	p.R385H	ENST00000375023	NM_004557.3	385	cGc/cAc																																																																														
YAP1	10413	MSKCC	GRCh37	11	102098231	102098231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	54	394	0	ENST00000282441.5:c.1195G>A	p.Asp399Asn	p.D399N	ENST00000282441	NM_001130145.2	399	Gac/Aac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57857517	57857517	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs890327478		P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	79	663	1	ENST00000228682.2:c.43G>A	p.Glu15Lys	p.E15K	ENST00000228682	NM_005269.2	15	Gag/Aag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10260162	10260162	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	81	519	0	ENST00000340748.4:c.2505C>G	p.Ile835Met	p.I835M	ENST00000340748		835	atC/atG																																																																														
ALK	238	MSKCC	GRCh37	2	30143318	30143345	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGGCGTAGACACGGAAGAGCGAGGG	CCCGGGCGTAGACACGGAAGAGCGAGGG	-			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	57	637	0	ENST00000389048.3:c.181_208del	p.Pro61ThrfsTer11	p.P61Tfs*11	ENST00000389048	NM_004304.4	61	CCCTCGCTCTTCCGTGTCTACGCCCGGGac/ac																																																																														
REL	5966	MSKCC	GRCh37	2	61148952	61148952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	32	286	0	ENST00000295025.8:c.1142C>T	p.Ser381Leu	p.S381L	ENST00000295025	NM_002908.2	381	tCa/tTa																																																																														
CASP8	841	MSKCC	GRCh37	2	202151181	202151181	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	39	231	0	ENST00000358485.4:c.1482-1G>C		p.X494_splice	ENST00000358485	NM_001080125.1	494																																																																															
PAK7	57144	MSKCC	GRCh37	20	9538328	9538328	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	56	415	0	ENST00000353224.5:c.1670C>G	p.Ser557Cys	p.S557C	ENST00000353224	NM_177990.2	557	tCc/tGc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713768	30713768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	77	398	0	ENST00000359013.4:c.1168C>T	p.His390Tyr	p.H390Y	ENST00000359013	NM_001024847.2	390	Cac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1260707	1260707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	57	462	0	ENST00000310581.5:c.2852G>A	p.Arg951Gln	p.R951Q	ENST00000310581	NM_198253.2	951	cGg/cAg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672638	30672638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	79	582	0	ENST00000376406.3:c.4322C>T	p.Ser1441Phe	p.S1441F	ENST00000376406	NM_014641.2	1441	tCt/tTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117700262	117700262	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	33	461	0	ENST00000368508.3:c.2557C>T	p.Gln853Ter	p.Q853*	ENST00000368508	NM_002944.2	853	Caa/Taa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412690	139412690	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	314	679	0	ENST00000277541.6:c.1154C>G	p.Ser385Cys	p.S385C	ENST00000277541	NM_017617.3	385	tCc/tGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259527	16259527	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	116	486	0	ENST00000375759.3:c.6792G>C	p.Glu2264Asp	p.E2264D	ENST00000375759	NM_015001.2	2264	gaG/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577512	7577518	+	frameshift_variant	Frame_Shift_Del	DEL	GTGTGAT	GTGTGAT	-			P-0030139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	166	564	0	ENST00000269305.4:c.763_769del	p.Ile255TrpfsTer88	p.I255Wfs*88	ENST00000269305	NM_001126112.2	255	ATCACACtg/tg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015193	37015193	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0030139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	103	361	0	ENST00000358127.4:c.213-2A>T		p.X71_splice	ENST00000358127	NM_001280556.1	71																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	347	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	362	519	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53231036	53231036	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	139	461	0	ENST00000375401.3:c.1866G>T	p.Trp622Cys	p.W622C	ENST00000375401	NM_004187.3	622	tgG/tgT																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625303	69625303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	175	599	0	ENST00000334134.2:c.490C>T	p.Arg164Cys	p.R164C	ENST00000334134	NM_005247.2	164	Cgc/Tgc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729697	41729697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	192	447	1	ENST00000242208.4:c.832G>T	p.Gly278Trp	p.G278W	ENST00000242208	NM_002192.2	278	Ggg/Tgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332760	70332760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	64	492	1	ENST00000373644.4:c.665G>A	p.Arg222His	p.R222H	ENST00000373644	NM_030625.2	222	cGc/cAc																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205113	61205113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	74	444	0	ENST00000301761.2:c.53G>C	p.Arg18Thr	p.R18T	ENST00000301761	NM_017841.2	18	aGg/aCg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211512	46211512	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	99	245	0	ENST00000334344.6:c.478A>T	p.Lys160Ter	p.K160*	ENST00000334344	NM_152641.2	160	Aaa/Taa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608288	28608288	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	64	499	0	ENST00000241453.7:c.1768T>C	p.Phe590Leu	p.F590L	ENST00000241453	NM_004119.2	590	Ttc/Ctc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609432	81609432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	77	437	0	ENST00000298171.2:c.1030C>A	p.Gln344Lys	p.Q344K	ENST00000298171	NM_000369.2	344	Cag/Aag																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609504	81609504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	104	446	0	ENST00000298171.2:c.1102C>A	p.Gln368Lys	p.Q368K	ENST00000298171	NM_000369.2	368	Cag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032333	10032333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	61	412	0	ENST00000330684.3:c.490G>T	p.Asp164Tyr	p.D164Y	ENST00000330684	NM_001134407.1	164	Gat/Tat																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961830	15961830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	65	401	0	ENST00000268712.3:c.5965C>G	p.Leu1989Val	p.L1989V	ENST00000268712	NM_006311.3	1989	Ctg/Gtg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302332	15302332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	433	730	0	ENST00000263388.2:c.939G>T	p.Gln313His	p.Q313H	ENST00000263388	NM_000435.2	313	caG/caT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210982	36210982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1902	106	811	0	ENST00000222270.7:c.733G>A	p.Val245Met	p.V245M	ENST00000222270	NM_014727.1	245	Gtg/Atg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085975	16085975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	228	452	1	ENST00000281043.3:c.1151G>A	p.Arg384Lys	p.R384K	ENST00000281043	NM_005378.4	384	aGa/aAa																																																																														
ALK	238	MSKCC	GRCh37	2	29416321	29416321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	99	622	2	ENST00000389048.3:c.4632C>A	p.Asn1544Lys	p.N1544K	ENST00000389048	NM_004304.4	1544	aaC/aaA																																																																														
BARD1	580	MSKCC	GRCh37	2	215645618	215645618	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	238	505	0	ENST00000260947.4:c.980G>T	p.Arg327Ile	p.R327I	ENST00000260947	NM_000465.2	327	aGa/aTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733358	40733358	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	44	389	0	ENST00000373198.4:c.3448G>C	p.Glu1150Gln	p.E1150Q	ENST00000373198	NM_133170.3	1150	Gag/Cag																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504926	186504926	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	79	262	0	ENST00000323963.5:c.782T>C	p.Leu261Ser	p.L261S	ENST00000323963		261	tTg/tCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557945	187557945	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	89	317	0	ENST00000441802.2:c.3766G>T	p.Glu1256Ter	p.E1256*	ENST00000441802	NM_005245.3	1256	Gag/Tag																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748535	43748535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	49	423	2	ENST00000523873.1:c.489G>T	p.Trp163Cys	p.W163C	ENST00000523873		163	tgG/tgT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638401	117638401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	84	363	0	ENST00000368508.3:c.6040G>C	p.Gly2014Arg	p.G2014R	ENST00000368508	NM_002944.2	2014	Gga/Cga																																																																														
SMO	6608	MSKCC	GRCh37	7	128846187	128846187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	389	532	0	ENST00000249373.3:c.1117G>T	p.Val373Leu	p.V373L	ENST00000249373	NM_005631.4	373	Gtg/Ttg																																																																														
BRAF	673	MSKCC	GRCh37	7	140501281	140501281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	317	383	0	ENST00000288602.6:c.791G>T	p.Cys264Phe	p.C264F	ENST00000288602	NM_004333.4	264	tGt/tTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914688	39914688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	150	527	2	ENST00000378444.4:c.4674G>T	p.Leu1558Phe	p.L1558F	ENST00000378444	NM_001123385.1	1558	ttG/ttT																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53230836	53230836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	97	617	0	ENST00000375401.3:c.1957G>T	p.Ala653Ser	p.A653S	ENST00000375401	NM_004187.3	653	Gcc/Tcc																																																																														
ATRX	546	MSKCC	GRCh37	X	76954061	76954061	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0030156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	147	520	0	ENST00000373344.5:c.189+1G>C		p.X63_splice	ENST00000373344	NM_000489.3	63																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	209	494	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830915	72830918	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0030180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	27	400	0	ENST00000268489.5:c.5663_5666del	p.Glu1888AlafsTer25	p.E1888Afs*25	ENST00000268489	NM_006885.3	1888	gAAAGc/gc																																																																														
APC	324	MSKCC	GRCh37	5	112174269	112174285	+	frameshift_variant	Frame_Shift_Del	DEL	AGTTTTGCAGTTATGGT	AGTTTTGCAGTTATGGT	-			P-0030180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	84	372	0	ENST00000257430.4:c.2978_2994del	p.Lys993ThrfsTer9	p.K993Tfs*9	ENST00000257430	NM_000038.5	993	aAGTTTTGCAGTTATGGT/a																																																																														
MTOR	2475	MSKCC	GRCh37	1	11313952	11313952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	88	602	1	ENST00000361445.4:c.784C>T	p.His262Tyr	p.H262Y	ENST00000361445	NM_004958.3	262	Cat/Tat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199567	16199568	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	41	392	1	ENST00000375759.3:c.340_341delinsTT	p.Pro114Phe	p.P114F	ENST00000375759	NM_015001.2	114	CCt/TTt																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598338	28598338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	79	610	0	ENST00000253063.3:c.310G>T	p.Asp104Tyr	p.D104Y	ENST00000253063	NM_031459.4	104	Gat/Tat																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935253	36935253	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	63	627	1	ENST00000361632.4:c.1474G>A	p.Glu492Lys	p.E492K	ENST00000361632		492	Gag/Aag																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937160	36937160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	55	645	0	ENST00000361632.4:c.1159C>T	p.Leu387Phe	p.L387F	ENST00000361632		387	Ctc/Ttc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46511611	46511612	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	51	483	1	ENST00000262741.5:c.1165_1166delinsAA	p.Gly389Lys	p.G389K	ENST00000262741	NM_003629.3	389	GGa/AAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65335136	65335136	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	127	445	0	ENST00000342505.4:c.505T>C	p.Cys169Arg	p.C169R	ENST00000342505	NM_002227.2	169	Tgc/Cgc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163804	72163804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	96	393	0	ENST00000357731.5:c.554G>A	p.Gly185Glu	p.G185E	ENST00000357731	NM_173808.2	185	gGa/gAa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332487	70332487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	140	536	0	ENST00000373644.4:c.392C>T	p.Ser131Phe	p.S131F	ENST00000373644	NM_030625.2	131	tCt/tTt																																																																														
HRAS	3265	MSKCC	GRCh37	11	533552	533552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	236	658	1	ENST00000311189.7:c.351G>T	p.Lys117Asn	p.K117N	ENST00000311189		117	aaG/aaT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118365427	118365427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	79	365	0	ENST00000534358.1:c.5308C>T	p.Pro1770Ser	p.P1770S	ENST00000534358	NM_005933.3	1770	Cca/Tca																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125514084	125514085	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	146	505	1	ENST00000428830.2:c.1022_1023delinsAA	p.Gly341Glu	p.G341E	ENST00000428830	NM_001114121.2	341	gGG/gAA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691241	18691241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	73	261	1	ENST00000266497.5:c.3352G>A	p.Glu1118Lys	p.E1118K	ENST00000266497		1118	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	98	464	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57857536	57857536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	156	654	0	ENST00000228682.2:c.62C>T	p.Pro21Leu	p.P21L	ENST00000228682	NM_005269.2	21	cCc/cTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133233835	133233835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	118	522	1	ENST00000320574.5:c.3469C>T	p.Pro1157Ser	p.P1157S	ENST00000320574	NM_006231.2	1157	Cca/Tca																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135283	30135283	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	70	365	0	ENST00000331968.5:c.535G>A	p.Gly179Arg	p.G179R	ENST00000331968	NM_002742.2	179	Ggg/Agg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2104396	2104396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	179	659	0	ENST00000219476.3:c.436C>T	p.Leu146Phe	p.L146F	ENST00000219476	NM_000548.3	146	Ctc/Ttc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3644465	3644465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	138	595	0	ENST00000294008.3:c.2149C>T	p.Leu717Phe	p.L717F	ENST00000294008	NM_032444.2	717	Ctc/Ttc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972440	81972440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	93	393	0	ENST00000359376.3:c.3233G>A	p.Arg1078Gln	p.R1078Q	ENST00000359376	NM_002661.3	1078	cGa/cAa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89839723	89839723	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	63	662	0	ENST00000389301.3:c.1970T>G	p.Leu657Arg	p.L657R	ENST00000389301	NM_000135.2	657	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	154	547	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579503	7579503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	113	629	2	ENST00000269305.4:c.184G>A	p.Glu62Lys	p.E62K	ENST00000269305	NM_001126112.2	62	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	149	543	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
FLCN	201163	MSKCC	GRCh37	17	17125858	17125859	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGTCAGCGA			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	98	600	0	ENST00000285071.4:c.727_735dup	p.Leu244_Ser246dup	p.L244_S246dup	ENST00000285071	NM_144997.5	244	-/TCGCTGACA																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276799	15276800	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	117	580	1	ENST00000263388.2:c.5465_5466delinsTT	p.Ser1822Phe	p.S1822F	ENST00000263388	NM_000435.2	1822	tCC/tTT																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082896	16082896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	38	192	0	ENST00000281043.3:c.710C>T	p.Pro237Leu	p.P237L	ENST00000281043	NM_005378.4	237	cCg/cTg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464460	25464460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	105	430	0	ENST00000264709.3:c.2053G>A	p.Gly685Arg	p.G685R	ENST00000264709	NM_175629.2	685	Ggg/Agg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268351	46268351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	160	383	0	ENST00000371998.3:c.2738A>G	p.Gln913Arg	p.Q913R	ENST00000371998		913	cAg/cGg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42839814	42839814	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	105	332	0	ENST00000398585.3:c.1426-1G>A		p.X476_splice	ENST00000398585	NM_001135099.1	476																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44513297	44513297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	171	601	0	ENST00000291552.4:c.638G>A	p.Gly213Asp	p.G213D	ENST00000291552	NM_006758.2	213	gGt/gAt																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119631622	119631622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	158	374	1	ENST00000316626.5:c.644C>T	p.Ser215Leu	p.S215L	ENST00000316626		215	tCg/tTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911561	134911561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	135	482	0	ENST00000398015.3:c.2026G>C	p.Asp676His	p.D676H	ENST00000398015	NM_004441.4	676	Gac/Cac																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502245	186502245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	75	294	0	ENST00000323963.5:c.54G>A	p.Met18Ile	p.M18I	ENST00000323963		18	atG/atA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539564	187539564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	74	319	1	ENST00000441802.2:c.8176C>T	p.Arg2726Ter	p.R2726*	ENST00000441802	NM_005245.3	2726	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	95	366	0				ENST00000310581	NM_198253.2																																																																																
HIST1H1C	3006	MSKCC	GRCh37	6	26056437	26056437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	22	249	0	ENST00000343677.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000343677	NM_005319.3	74	Gag/Aag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979282	93979282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	46	426	0	ENST00000369303.4:c.1546C>T	p.Arg516Trp	p.R516W	ENST00000369303	NM_004440.3	516	Cgg/Tgg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508631	106508631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	108	426	0	ENST00000359195.3:c.625G>A	p.Glu209Lys	p.E209K	ENST00000359195	NM_002649.2	209	Gag/Aag																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542228	141542228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	144	390	1	ENST00000220592.5:c.2495G>A	p.Gly832Glu	p.G832E	ENST00000220592	NM_012154.3	832	gGg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	300	306	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	300	306	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	300	306	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
ABL1	25	MSKCC	GRCh37	9	133738222	133738223	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	182	462	2	ENST00000318560.5:c.622_623delinsAT	p.Gly208Met	p.G208M	ENST00000318560	NM_005157.4	208	GGg/ATg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650787	48650787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	139	354	1	ENST00000376670.3:c.656G>A	p.Arg219Lys	p.R219K	ENST00000376670	NM_002049.3	219	aGg/aAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	271	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	155	491	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	142	331	0	ENST00000342988.3:c.1523G>A	p.Gly508Asp	p.G508D	ENST00000342988	NM_005359.5	508	gGc/gAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448321	56448321	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	223	521	0	ENST00000407977.2:c.326T>C	p.Leu109Pro	p.L109P	ENST00000407977		109	cTg/cCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	84	277	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	348	561	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412375	139412375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	416	426	0	ENST00000277541.6:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000277541	NM_017617.3	424	Gag/Aag																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681353	88681353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140592056		P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	14	124	1	ENST00000372037.3:c.1243G>A	p.Glu415Lys	p.E415K	ENST00000372037	NM_004329.2	415	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651496	52651496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	158	490	1	ENST00000394830.3:c.1600C>T	p.Arg534Ter	p.R534*	ENST00000394830	NM_018313.4	534	Cga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231707	66231707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	104	505	0	ENST00000273854.3:c.1993G>A	p.Glu665Lys	p.E665K	ENST00000273854	NM_004439.5	665	Gaa/Aaa																																																																														
SMO	6608	MSKCC	GRCh37	7	128829243	128829243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	104	403	0	ENST00000249373.3:c.251C>T	p.Pro84Leu	p.P84L	ENST00000249373	NM_005631.4	84	cCc/cTc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	61	409	1	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460401	149460401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	126	450	0	ENST00000286301.3:c.236C>T	p.Thr79Met	p.T79M	ENST00000286301	NM_005211.3	79	aCg/aTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	22	148	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	149	544	2	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024480	16024480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	135	368	0	ENST00000268712.3:c.1738C>T	p.Arg580Cys	p.R580C	ENST00000268712	NM_006311.3	580	Cgc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248726	212248726	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	93	356	0	ENST00000342788.4:c.3541C>T	p.Gln1181Ter	p.Q1181*	ENST00000342788	NM_005235.2	1181	Caa/Taa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933640	39933640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	122	213	0	ENST00000378444.4:c.959C>T	p.Ala320Val	p.A320V	ENST00000378444	NM_001123385.1	320	gCg/gTg																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873458	136873458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	106	381	0	ENST00000241393.3:c.40G>A	p.Glu14Lys	p.E14K	ENST00000241393	NM_003467.2	14	Gag/Aag																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514302	69514302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	146	482	1	ENST00000294312.3:c.379C>T	p.Arg127Cys	p.R127C	ENST00000294312	NM_005117.2	127	Cgc/Tgc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845529	63845529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	106	458	0	ENST00000279873.7:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000279873	NM_032199.2	423	cGg/cAg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31387086	31387086	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	171	481	1	ENST00000328111.2:c.1711C>T	p.Arg571Ter	p.R571*	ENST00000328111	NM_006892.3	571	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117650567	117650567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	145	580	0	ENST00000368508.3:c.5291G>A	p.Gly1764Glu	p.G1764E	ENST00000368508	NM_002944.2	1764	gGg/gAg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350674	89350674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	189	712	0	ENST00000301030.4:c.2276G>A	p.Arg759Lys	p.R759K	ENST00000301030	NM_001256183.1	759	aGa/aAa																																																																														
BBC3	27113	MSKCC	GRCh37	19	47731464	47731464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	67	81	0	ENST00000449228.1:c.328C>T	p.Pro110Ser	p.P110S	ENST00000449228	NM_001127240.2	110	Ccg/Tcg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10270726	10270726	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	141	449	0	ENST00000340748.4:c.1009del	p.Met337TrpfsTer8	p.M337Wfs*8	ENST00000340748		337	Atg/tg																																																																														
CBL	867	MSKCC	GRCh37	11	119156046	119156046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	146	491	0	ENST00000264033.4:c.1711G>A	p.Asp571Asn	p.D571N	ENST00000264033	NM_005188.3	571	Gac/Aac																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628323	86628323	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	79	254	0	ENST00000274376.6:c.693-1G>A		p.X231_splice	ENST00000274376	NM_002890.2	231																																																																															
IDH1	3417	MSKCC	GRCh37	2	209113208	209113208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	117	424	0	ENST00000345146.2:c.299G>A	p.Arg100Gln	p.R100Q	ENST00000345146	NM_005896.2	100	cGa/cAa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961148	41961148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	89	403	0	ENST00000219905.7:c.56G>A	p.Gly19Glu	p.G19E	ENST00000219905	NM_001164273.1	19	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	96	314	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	96	314	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	96	314	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
ROS1	6098	MSKCC	GRCh37	6	117650583	117650583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	130	550	0	ENST00000368508.3:c.5275C>T	p.Pro1759Ser	p.P1759S	ENST00000368508	NM_002944.2	1759	Ccc/Tcc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	91	404	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45858935	45858935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	198	537	2	ENST00000391945.4:c.1531C>T	p.Arg511Trp	p.R511W	ENST00000391945	NM_000400.3	511	Cgg/Tgg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786784	3786784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	98	359	0	ENST00000262367.5:c.4427C>T	p.Pro1476Leu	p.P1476L	ENST00000262367	NM_004380.2	1476	cCa/cTa																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140869	37140869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	137	543	1	ENST00000373509.5:c.705G>A	p.Met235Ile	p.M235I	ENST00000373509	NM_002648.3	235	atG/atA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447848	49447848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	185	531	0	ENST00000301067.7:c.586C>T	p.Pro196Ser	p.P196S	ENST00000301067	NM_003482.3	196	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916206	9916206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	90	491	0	ENST00000330684.3:c.2083C>T	p.Arg695Trp	p.R695W	ENST00000330684	NM_001134407.1	695	Cgg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52662972	52662972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	103	457	0	ENST00000394830.3:c.1381C>T	p.Arg461Cys	p.R461C	ENST00000394830	NM_018313.4	461	Cgc/Tgc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3645613	3645613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200807331		P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	187	498	1	ENST00000294008.3:c.2006G>A	p.Arg669His	p.R669H	ENST00000294008	NM_032444.2	669	cGc/cAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81979857	81979857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	107	346	0	ENST00000359376.3:c.3559C>T	p.Arg1187Trp	p.R1187W	ENST00000359376	NM_002661.3	1187	Cgg/Tgg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678469	88678469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	127	506	0	ENST00000360948.2:c.1067G>A	p.Gly356Glu	p.G356E	ENST00000360948	NM_001012338.2	356	gGa/gAa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546635	9546635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	133	426	0	ENST00000353224.5:c.1387G>A	p.Val463Ile	p.V463I	ENST00000353224	NM_177990.2	463	Gta/Ata																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702367	47702367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	107	386	0	ENST00000233146.2:c.1963G>A	p.Val655Ile	p.V655I	ENST00000233146	NM_000251.2	655	Gta/Ata																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096907	11096907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	166	586	0	ENST00000344626.4:c.398C>T	p.Pro133Leu	p.P133L	ENST00000344626	NM_003072.3	133	cCa/cTa																																																																														
RET	5979	MSKCC	GRCh37	10	43609955	43609955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	178	641	1	ENST00000355710.3:c.1907C>T	p.Thr636Met	p.T636M	ENST00000355710	NM_020975.4	636	aCg/aTg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56348560	56348561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	82	289	1	ENST00000348428.3:c.374dup	p.Gly126ArgfsTer40	p.G126Rfs*40	ENST00000348428	NM_006785.3	123	agc/agCc																																																																														
RET	5979	MSKCC	GRCh37	10	43601854	43601854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	78	425	0	ENST00000355710.3:c.898G>A	p.Asp300Asn	p.D300N	ENST00000355710	NM_020975.4	300	Gat/Aat																																																																														
STK40	83931	MSKCC	GRCh37	1	36823877	36823877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	90	420	0	ENST00000373129.3:c.305C>T	p.Thr102Met	p.T102M	ENST00000373129	NM_032017.1	102	aCg/aTg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46738343	46738343	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	119	437	0	ENST00000371975.4:c.1245-1G>A		p.X415_splice	ENST00000371975	NM_003579.3	415																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120484362	120484363	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	69	382	1	ENST00000256646.2:c.2767_2768delinsAA	p.Gly923Lys	p.G923K	ENST00000256646	NM_024408.3	923	GGa/AAa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716193	243716193	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	261	533	0	ENST00000263826.5:c.1001T>C	p.Val334Ala	p.V334A	ENST00000263826	NM_005465.4	334	gTt/gCt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939774	71939774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	128	550	0	ENST00000298229.2:c.401G>A	p.Gly134Glu	p.G134E	ENST00000298229	NM_001567.3	134	gGg/gAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948488	71948488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	196	632	0	ENST00000298229.2:c.3200C>A	p.Pro1067His	p.P1067H	ENST00000298229	NM_001567.3	1067	cCc/cAc																																																																														
ATM	472	MSKCC	GRCh37	11	108205695	108205695	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	82	308	0	ENST00000278616.4:c.8011-1G>A		p.X2671_splice	ENST00000278616	NM_000051.3	2671																																																																															
KDM5A	5927	MSKCC	GRCh37	12	459927	459927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	121	448	0	ENST00000399788.2:c.1168G>A	p.Val390Ile	p.V390I	ENST00000399788	NM_001042603.1	390	Gta/Ata																																																																														
RAD52	5893	MSKCC	GRCh37	12	1022611	1022611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	133	488	0	ENST00000358495.3:c.1203G>T	p.Trp401Cys	p.W401C	ENST00000358495	NM_134424.2	401	tgG/tgT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420777	49420777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	137	479	1	ENST00000301067.7:c.14972G>A	p.Arg4991Gln	p.R4991Q	ENST00000301067	NM_003482.3	4991	cGg/cAg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865504	57865504	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	142	563	1	ENST00000228682.2:c.2981C>G	p.Pro994Arg	p.P994R	ENST00000228682	NM_005269.2	994	cCa/cGa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69210681	69210683	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	81	400	0	ENST00000462284.1:c.266_268del	p.Gly89del	p.G89del	ENST00000462284	NM_002392.5	88	ctAGGa/cta																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811741	102811741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	163	532	0	ENST00000307046.8:c.443G>A	p.Arg148Lys	p.R148K	ENST00000307046	NM_001111285.1	148	aGa/aAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930573	32930573	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	84	337	0	ENST00000380152.3:c.7444A>G	p.Thr2482Ala	p.T2482A	ENST00000380152		2482	Aca/Gca																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504512	103504512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	99	348	0	ENST00000355739.4:c.133C>T	p.Arg45Cys	p.R45C	ENST00000355739	NM_000123.3	45	Cgc/Tgc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986674	36986674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	32	42	1	ENST00000354822.5:c.1015G>A	p.Gly339Ser	p.G339S	ENST00000354822	NM_001079668.2	339	Ggt/Agt																																																																														
BLM	641	MSKCC	GRCh37	15	91328163	91328163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	86	367	0	ENST00000355112.3:c.2675T>C	p.Ile892Thr	p.I892T	ENST00000355112	NM_000057.2	892	aTa/aCa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	360054	360055	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	99	433	0	ENST00000262320.3:c.1034dup	p.Tyr346IlefsTer5	p.Y346Ifs*5	ENST00000262320	NM_003502.3	345	cca/ccCa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663359	67663359	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	138	461	0	ENST00000264010.4:c.1760A>T	p.Asn587Ile	p.N587I	ENST00000264010	NM_006565.3	587	aAt/aTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829961	72829961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	148	626	0	ENST00000268489.5:c.6620C>T	p.Ser2207Phe	p.S2207F	ENST00000268489	NM_006885.3	2207	tCc/tTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81954849	81954849	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	190	528	0	ENST00000359376.3:c.2282A>C	p.Asp761Ala	p.D761A	ENST00000359376	NM_002661.3	761	gAt/gCt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974748	15974748	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	119	420	0	ENST00000268712.3:c.4127C>G	p.Pro1376Arg	p.P1376R	ENST00000268712	NM_006311.3	1376	cCg/cGg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375529	40375529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	168	574	0	ENST00000293328.3:c.421C>T	p.His141Tyr	p.H141Y	ENST00000293328	NM_012448.3	141	Cac/Tac																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462635	40462635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	154	480	0	ENST00000345506.4:c.2333G>A	p.Arg778His	p.R778H	ENST00000345506	NM_003152.3	778	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573583	48573583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	110	409	0	ENST00000342988.3:c.167C>T	p.Ser56Phe	p.S56F	ENST00000342988	NM_005359.5	56	tCt/tTt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210762	2210762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	154	499	2	ENST00000398665.3:c.1259C>T	p.Ala420Val	p.A420V	ENST00000398665	NM_032482.2	420	gCg/gTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954282	17954282	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	133	563	0	ENST00000458235.1:c.327G>A	p.Trp109Ter	p.W109*	ENST00000458235	NM_000215.3	109	tgG/tgA																																																																														
UPF1	5976	MSKCC	GRCh37	19	18956905	18956906	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	93	459	1	ENST00000262803.5:c.348_349delinsAA	p.Asp117Asn	p.D117N	ENST00000262803	NM_002911.3	116	aaGGac/aaAAac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222808	36222808	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	147	510	0	ENST00000222270.7:c.5438-1G>A		p.X1813_splice	ENST00000222270	NM_014727.1	1813																																																																															
CIC	23152	MSKCC	GRCh37	19	42796254	42796254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	144	479	1	ENST00000575354.2:c.2903C>T	p.Pro968Leu	p.P968L	ENST00000575354	NM_015125.3	968	cCg/cTg																																																																														
ALK	238	MSKCC	GRCh37	2	29446229	29446229	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199987354		P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	130	445	0	ENST00000389048.3:c.3338G>A	p.Arg1113Gln	p.R1113Q	ENST00000389048	NM_004304.4	1113	cGg/cAg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639559	47639559	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	86	298	0	ENST00000233146.2:c.652C>T	p.Gln218Ter	p.Q218*	ENST00000233146	NM_000251.2	218	Caa/Taa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47643538	47643538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	145	546	0	ENST00000233146.2:c.1046C>T	p.Pro349Leu	p.P349L	ENST00000233146	NM_000251.2	349	cCt/cTt																																																																														
CASP8	841	MSKCC	GRCh37	2	202149831	202149831	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	131	487	0	ENST00000358485.4:c.1272C>A	p.Tyr424Ter	p.Y424*	ENST00000358485	NM_001080125.1	424	taC/taA																																																																														
INHA	3623	MSKCC	GRCh37	2	220439553	220439553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	149	463	1	ENST00000243786.2:c.406G>A	p.Gly136Arg	p.G136R	ENST00000243786	NM_002191.3	136	Ggg/Agg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067399	37067400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	133	418	0	ENST00000231790.2:c.1311dup	p.Ala438CysfsTer2	p.A438Cfs*2	ENST00000231790	NM_000249.3	437	cct/ccTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275708	41275708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	143	448	1	ENST00000349496.5:c.1603C>T	p.Arg535Ter	p.R535*	ENST00000349496	NM_001904.3	535	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278202	41278202	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	109	380	0	ENST00000349496.5:c.2076+2T>C		p.X692_splice	ENST00000349496	NM_001904.3	692																																																																															
MITF	4286	MSKCC	GRCh37	3	69990449	69990450	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	104	407	0	ENST00000352241.4:c.731dup	p.Leu244PhefsTer20	p.L244Ffs*20	ENST00000352241	NM_198159.2	243	-/T																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260193	149260194	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTG			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	99	455	0	ENST00000360632.3:c.697_699dupCAG	p.Gln233dup	p.Q233dup	ENST00000360632	NM_015472.4	233	-/CAG																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127399	55127400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	156	525	0	ENST00000257290.5:c.189dup	p.Glu64ArgfsTer11	p.E64Rfs*11	ENST00000257290	NM_006206.4	63	gaa/gAaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55948725	55948725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	135	505	0	ENST00000263923.4:c.3740C>T	p.Pro1247Leu	p.P1247L	ENST00000263923	NM_002253.2	1247	cCa/cTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524341	187524341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	122	350	0	ENST00000441802.2:c.11339G>A	p.Cys3780Tyr	p.C3780Y	ENST00000441802	NM_005245.3	3780	tGt/tAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539548	187539548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	110	350	0	ENST00000441802.2:c.8192G>C	p.Gly2731Ala	p.G2731A	ENST00000441802	NM_005245.3	2731	gGg/gCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628905	187628908	+	frameshift_variant	Frame_Shift_Del	DEL	ATTT	ATTT	-			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	120	547	0	ENST00000441802.2:c.2074_2077del	p.Lys692TyrfsTer34	p.K692Yfs*34	ENST00000441802	NM_005245.3	692	AAATta/ta																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67575558	67575558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	85	287	0	ENST00000274335.5:c.631C>T	p.Pro211Ser	p.P211S	ENST00000274335		211	Cca/Tca																																																																														
APC	324	MSKCC	GRCh37	5	112176287	112176288	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	127	421	1	ENST00000257430.4:c.4996_4997delinsTT	p.Pro1666Leu	p.P1666L	ENST00000257430	NM_000038.5	1666	CCa/TTa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20486964	20486964	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	110	400	0	ENST00000346618.3:c.929T>G	p.Leu310Arg	p.L310R	ENST00000346618	NM_001949.4	310	cTt/cGt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169167	32169167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	291	561	0	ENST00000375023.3:c.3866G>A	p.Gly1289Glu	p.G1289E	ENST00000375023	NM_004557.3	1289	gGg/gAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641151	117641152	+	missense_variant	Missense_Mutation	DNP	GA	GA	AG			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	151	588	1	ENST00000368508.3:c.5819_5820delinsCT	p.Phe1940Ser	p.F1940S	ENST00000368508	NM_002944.2	1940	tTC/tCT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686288	117686288	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	122	394	0	ENST00000368508.3:c.3053T>C	p.Val1018Ala	p.V1018A	ENST00000368508	NM_002944.2	1018	gTc/gCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55233129	55233129	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	170	486	0	ENST00000275493.2:c.1879G>A	p.Gly627Arg	p.G627R	ENST00000275493	NM_005228.3	627	Gga/Aga																																																																														
MET	4233	MSKCC	GRCh37	7	116418854	116418855	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	96	281	0	ENST00000397752.3:c.3365_3366delinsTT	p.Ser1122Phe	p.S1122F	ENST00000397752	NM_000245.2	1122	tCC/tTT																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372104	55372104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	171	369	0	ENST00000297316.4:c.794C>T	p.Pro265Leu	p.P265L	ENST00000297316	NM_022454.3	265	cCt/cTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69011941	69011941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	137	523	0	ENST00000288368.4:c.2578G>A	p.Asp860Asn	p.D860N	ENST00000288368	NM_024870.2	860	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021759	69021763	+	missense_variant	Missense_Mutation	ONP	AAGAA	AAGAA	CTAAG			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	109	549	2	ENST00000288368.4:c.3047_3051delinsCTAAG	p.Lys1016_Glu1017delinsThrLys	p.K1016_E1017delinsTK	ENST00000288368	NM_024870.2	1016	aAAGAA/aCTAAG																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341138	8341139	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	72	494	0	ENST00000356435.5:c.5077_5078delinsAA	p.Gly1693Lys	p.G1693K	ENST00000356435		1693	GGa/AAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8501056	8501056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	74	260	0	ENST00000356435.5:c.1826C>T	p.Pro609Leu	p.P609L	ENST00000356435		609	cCg/cTg																																																																														
TEK	7010	MSKCC	GRCh37	9	27172728	27172728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	110	496	1	ENST00000380036.4:c.743G>A	p.Gly248Glu	p.G248E	ENST00000380036	NM_000459.3	248	gGa/gAa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400180	139400180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	314	571	0	ENST00000277541.6:c.4168C>T	p.Pro1390Ser	p.P1390S	ENST00000277541	NM_017617.3	1390	Ccc/Tcc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139410466	139410466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	346	570	1	ENST00000277541.6:c.1636G>A	p.Gly546Arg	p.G546R	ENST00000277541	NM_017617.3	546	Gga/Aga																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021761	69021761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	106	550	1	ENST00000288368.4:c.3049G>A	p.Glu1017Lys	p.E1017K	ENST00000288368	NM_024870.2	1017	Gaa/Aaa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18956906	18956906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	92	446	0	ENST00000262803.5:c.349G>A	p.Asp117Asn	p.D117N	ENST00000262803	NM_002911.3	117	Gac/Aac																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402595	20402595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	42	309	0	ENST00000346618.3:c.132C>A	p.Phe44Leu	p.F44L	ENST00000346618	NM_001949.4	44	ttC/ttA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	149	631	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
SMARCB1	6598	MSKCC	GRCh37	22	24145513	24145513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	64	540	0	ENST00000263121.7:c.532G>A	p.Glu178Lys	p.E178K	ENST00000263121	NM_003073.3	178	Gag/Aag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523718	176523718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	190	578	0	ENST00000292408.4:c.2129G>T	p.Arg710Leu	p.R710L	ENST00000292408	NM_213647.1	710	cGa/cTa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459236	120459236	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	58	526	0	ENST00000256646.2:c.6109G>C	p.Asp2037His	p.D2037H	ENST00000256646	NM_024408.3	2037	Gac/Cac																																																																														
BIRC3	330	MSKCC	GRCh37	11	102196262	102196262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	27	326	0	ENST00000263464.3:c.919G>A	p.Asp307Asn	p.D307N	ENST00000263464	NM_001165.4	307	Gat/Aat																																																																														
FLCN	201163	MSKCC	GRCh37	17	17129558	17129558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	139	692	0	ENST00000285071.4:c.328C>A	p.Gln110Lys	p.Q110K	ENST00000285071	NM_144997.5	110	Cag/Aag																																																																														
TCF3	6929	MSKCC	GRCh37	19	1632081	1632081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	143	613	1	ENST00000344749.5:c.254A>G	p.His85Arg	p.H85R	ENST00000344749	NM_001136139.2	85	cAc/cGc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096957	11096957	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	138	693	0	ENST00000344626.4:c.448G>T	p.Gly150Ter	p.G150*	ENST00000344626	NM_003072.3	150	Gga/Tga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134236	11134236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	100	557	0	ENST00000344626.4:c.2902C>T	p.Leu968Phe	p.L968F	ENST00000344626	NM_003072.3	968	Ctc/Ttc																																																																														
CENPA	1058	MSKCC	GRCh37	2	27009150	27009150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	40	174	0	ENST00000335756.4:c.86G>T	p.Arg29Leu	p.R29L	ENST00000335756	NM_001809.3	29	cGg/cTg																																																																														
ALK	238	MSKCC	GRCh37	2	29462642	29462642	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	63	640	0	ENST00000389048.3:c.2259del	p.Ser754ProfsTer36	p.S754Pfs*36	ENST00000389048	NM_004304.4	753	cgG/cg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259286	89259286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	98	494	0	ENST00000336596.2:c.430G>T	p.Asp144Tyr	p.D144Y	ENST00000336596	NM_005233.5	144	Gac/Tac																																																																														
ATR	545	MSKCC	GRCh37	3	142218547	142218547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	39	403	0	ENST00000350721.4:c.5302G>C	p.Asp1768His	p.D1768H	ENST00000350721	NM_001184.3	1768	Gat/Cat																																																																														
KDR	3791	MSKCC	GRCh37	4	55972039	55972039	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	107	473	0	ENST00000263923.4:c.1605A>T	p.Lys535Asn	p.K535N	ENST00000263923	NM_002253.2	535	aaA/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532783	187532783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	73	572	0	ENST00000441802.2:c.9610C>A	p.Gln3204Lys	p.Q3204K	ENST00000441802	NM_005245.3	3204	Caa/Aaa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005504	150005504	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	41	422	0	ENST00000253339.5:c.721C>G	p.Gln241Glu	p.Q241E	ENST00000253339		241	Caa/Gaa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370781	55370781	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199550282		P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	48	399	0	ENST00000297316.4:c.83G>T	p.Gly28Val	p.G28V	ENST00000297316	NM_022454.3	28	gGc/gTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992741	68992741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	73	671	0	ENST00000288368.4:c.1706T>C	p.Met569Thr	p.M569T	ENST00000288368	NM_024870.2	569	aTg/aCg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964445	70964445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	115	544	1	ENST00000276594.2:c.1583C>T	p.Ser528Phe	p.S528F	ENST00000276594	NM_024504.3	528	tCc/tTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404576	8404576	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	53	348	0	ENST00000356435.5:c.4171G>C	p.Ala1391Pro	p.A1391P	ENST00000356435		1391	Gca/Cca																																																																														
MED12	9968	MSKCC	GRCh37	X	70347814	70347814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	101	537	1	ENST00000374080.3:c.3053C>A	p.Ala1018Glu	p.A1018E	ENST00000374080		1018	gCa/gAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70354961	70354961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	112	551	0	ENST00000374080.3:c.4883A>T	p.Gln1628Leu	p.Q1628L	ENST00000374080		1628	cAg/cTg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TT			P-0030299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	143	639	0	ENST00000326873.7:c.165delinsTT	p.Gly56TrpfsTer107	p.G56Wfs*107	ENST00000326873	NM_000455.4	55	ctG/ctTT																																																																														
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	269	725	0	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	67	250	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0030314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	194	452	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																														
CASP8	841	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	116	495	0	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																																																														
STAT3	6774	MSKCC	GRCh37	17	40486032	40486032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	83	561	0	ENST00000264657.5:c.833G>A	p.Arg278His	p.R278H	ENST00000264657	NM_139276.2	278	cGt/cAt																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217293	7217293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	115	568	0	ENST00000380728.2:c.412C>T	p.His138Tyr	p.H138Y	ENST00000380728		138	Cac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	78	488	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457653	67457653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	104	607	0	ENST00000327367.4:c.463G>A	p.Asp155Asn	p.D155N	ENST00000327367	NM_005902.3	155	Gac/Aac																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571407	95571407	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	51	230	0	ENST00000343455.3:c.3269+1G>A		p.X1090_splice	ENST00000343455	NM_177438.2	1090																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25967287	25967287	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	133	495	0	ENST00000435504.4:c.1919C>G	p.Ala640Gly	p.A640G	ENST00000435504		640	gCt/gGt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644703	134644703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	115	516	0	ENST00000398015.3:c.104C>T	p.Thr35Met	p.T35M	ENST00000398015	NM_004441.4	35	aCg/aTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229536	98229536	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	105	478	0	ENST00000331920.6:c.2422C>T	p.Gln808Ter	p.Q808*	ENST00000331920	NM_000264.3	808	Cag/Tag																																																																														
ARAF	369	MSKCC	GRCh37	X	47426132	47426132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	134	681	0	ENST00000377045.4:c.652G>A	p.Val218Ile	p.V218I	ENST00000377045	NM_001654.4	218	Gtc/Atc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279674	123279674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	62	331	0	ENST00000358487.5:c.758C>G	p.Pro253Arg	p.P253R	ENST00000358487	NM_000141.4	253	cCt/cGt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942090	71942090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	136	706	0	ENST00000298229.2:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000298229	NM_001567.3	452	Ggg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	107	649	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579722	7579722	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	93	574	1	ENST00000269305.4:c.75-1G>T		p.X25_splice	ENST00000269305	NM_001126112.2	25																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31019126	31019126	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	80	442	0	ENST00000375687.4:c.721C>A	p.Gln241Lys	p.Q241K	ENST00000375687	NM_015338.5	241	Caa/Aaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47061249	47061249	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	83	409	0	ENST00000409792.3:c.7431+1G>T		p.X2477_splice	ENST00000409792	NM_014159.6	2477																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	41	243	0	ENST00000304494.5:c.65G>C	p.Arg22Pro	p.R22P	ENST00000304494	NM_000077.4	22	cGg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	41	243	0	ENST00000304494.5:c.65G>C	p.Arg22Pro	p.R22P	ENST00000304494	NM_000077.4	22	cGg/cCg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787783	135787783	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	89	520	0	ENST00000298552.3:c.799del	p.Thr267GlnfsTer51	p.T267Qfs*51	ENST00000298552	NM_001162426.1	267	Aca/ca																																																																														
MED12	9968	MSKCC	GRCh37	X	70356437	70356437	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	93	654	0	ENST00000374080.3:c.5332A>T	p.Ser1778Cys	p.S1778C	ENST00000374080		1778	Agt/Tgt																																																																														
XIAP	331	MSKCC	GRCh37	X	123034349	123034349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	68	380	0	ENST00000355640.3:c.1106C>A	p.Thr369Asn	p.T369N	ENST00000355640		369	aCc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	213	382	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	72	405	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	87	436	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555057	106555057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	92	371	0	ENST00000369096.4:c.2174G>A	p.Arg725Gln	p.R725Q	ENST00000369096	NM_001198.3	725	cGa/cAa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	222	472	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
PAX5	5079	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	200	581	0	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	89	490	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	99	449	10	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098411	11098411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	116	424	1	ENST00000344626.4:c.929G>A	p.Arg310His	p.R310H	ENST00000344626	NM_003072.3	310	cGc/cAc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066648	94066648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	230	366	0	ENST00000369303.4:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000369303	NM_004440.3	371	Cgg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303029	15303029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	118	691	0	ENST00000263388.2:c.421C>T	p.Arg141Cys	p.R141C	ENST00000263388	NM_000435.2	141	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628340	187628340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	98	460	0	ENST00000441802.2:c.2642G>A	p.Arg881His	p.R881H	ENST00000441802	NM_005245.3	881	cGc/cAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348011	348011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	134	547	0	ENST00000262320.3:c.1495G>A	p.Val499Met	p.V499M	ENST00000262320	NM_003502.3	499	Gtg/Atg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905485	50905485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	101	633	0	ENST00000440232.2:c.613G>A	p.Gly205Ser	p.G205S	ENST00000440232	NM_002691.3	205	Ggc/Agc																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38184289	38184289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149768452		P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	68	494	0	ENST00000317025.8:c.1667C>T	p.Thr556Met	p.T556M	ENST00000317025	NM_023034.1	556	aCg/aTg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61709534	61709534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	40	294	0	ENST00000401558.2:c.2953G>A	p.Ala985Thr	p.A985T	ENST00000401558	NM_003400.3	985	Gcc/Acc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139794895	139794895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	68	309	0	ENST00000247668.2:c.289C>T	p.Arg97Cys	p.R97C	ENST00000247668	NM_021138.3	97	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433960	49433960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	92	604	0	ENST00000301067.7:c.7593del	p.Ser2532LeufsTer11	p.S2532Lfs*11	ENST00000301067	NM_003482.3	2531	ccC/cc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11182095	11182095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	83	465	0	ENST00000361445.4:c.6751C>T	p.Arg2251Trp	p.R2251W	ENST00000361445	NM_004958.3	2251	Cgg/Tgg																																																																														
SDHB	6390	MSKCC	GRCh37	1	17349218	17349218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	62	309	0	ENST00000375499.3:c.650G>A	p.Arg217His	p.R217H	ENST00000375499	NM_003000.2	217	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023810	27023811	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	85	338	0	ENST00000324856.7:c.920dup	p.Tyr308LeufsTer92	p.Y308Lfs*92	ENST00000324856	NM_006015.4	306	cgg/cGgg																																																																														
PARP1	142	MSKCC	GRCh37	1	226564886	226564886	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	76	366	1	ENST00000366794.5:c.1864delA	p.Thr622ProfsTer31	p.T622Pfs*31	ENST00000366794	NM_001618.3	622	Acc/cc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123324999	123324999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	66	379	0	ENST00000358487.5:c.329G>A	p.Ser110Asn	p.S110N	ENST00000358487	NM_000141.4	110	aGt/aAt																																																																														
PAK1	5058	MSKCC	GRCh37	11	77103409	77103409	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	94	278	0	ENST00000356341.3:c.157C>T	p.Arg53Ter	p.R53*	ENST00000356341	NM_002576.4	53	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404932	404932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	79	337	0	ENST00000399788.2:c.4262G>A	p.Arg1421Gln	p.R1421Q	ENST00000399788	NM_001042603.1	1421	cGg/cAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133219879	133219879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	205	460	0	ENST00000320574.5:c.4482G>T	p.Gln1494His	p.Q1494H	ENST00000320574	NM_006231.2	1494	caG/caT																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562187	21562187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	157	751	0	ENST00000382592.4:c.1732G>A	p.Val578Ile	p.V578I	ENST00000382592	NM_014572.2	578	Gtt/Att																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914152	32914152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	84	410	0	ENST00000380152.3:c.5660C>T	p.Thr1887Met	p.T1887M	ENST00000380152		1887	aCg/aTg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134150	41134150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	63	268	0	ENST00000379561.5:c.1478G>A	p.Gly493Asp	p.G493D	ENST00000379561	NM_002015.3	493	gGc/gAc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046586	30046586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	81	438	0	ENST00000331968.5:c.2597A>G	p.Asp866Gly	p.D866G	ENST00000331968	NM_002742.2	866	gAc/gGc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121868	2121868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	86	565	1	ENST00000219476.3:c.2030C>A	p.Pro677His	p.P677H	ENST00000219476	NM_000548.3	677	cCc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777766	3777766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	130	767	0	ENST00000262367.5:c.7282G>A	p.Gly2428Arg	p.G2428R	ENST00000262367	NM_004380.2	2428	Ggg/Agg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274172	10274172	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	71	353	0	ENST00000330684.3:c.97G>C	p.Ala33Pro	p.A33P	ENST00000330684	NM_001134407.1	33	Gcg/Ccg																																																																														
NF1	4763	MSKCC	GRCh37	17	29652996	29652996	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	69	367	0	ENST00000358273.4:c.4998del	p.Pro1667LeufsTer31	p.P1667Lfs*31	ENST00000358273	NM_001042492.2	1665	gTt/gt																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325891	30325891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	63	345	0	ENST00000322652.5:c.2089G>A	p.Ala697Thr	p.A697T	ENST00000322652	NM_015355.2	697	Gca/Aca																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441539	40441539	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	112	618	0	ENST00000345506.4:c.110G>A	p.Trp37Ter	p.W37*	ENST00000345506	NM_003152.3	37	tGg/tAg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761145	59761145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	84	496	0	ENST00000259008.2:c.3262C>G	p.His1088Asp	p.H1088D	ENST00000259008	NM_032043.2	1088	Cat/Gat																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532613	63532613	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	127	582	0	ENST00000307078.5:c.1966C>T	p.Arg656Ter	p.R656*	ENST00000307078	NM_004655.3	656	Cga/Tga																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39637932	39637932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	82	379	0	ENST00000262039.4:c.2349G>T	p.Met783Ile	p.M783I	ENST00000262039	NM_002647.2	783	atG/atT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599915	10599915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	216	503	2	ENST00000171111.5:c.1661G>A	p.Arg554Gln	p.R554Q	ENST00000171111	NM_203500.1	554	cGa/cAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42793508	42793508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	134	570	0	ENST00000575354.2:c.1310A>G	p.Asp437Gly	p.D437G	ENST00000575354	NM_015125.3	437	gAt/gGt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46597007	46597007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	114	353	0	ENST00000263734.3:c.821G>A	p.Gly274Asp	p.G274D	ENST00000263734	NM_001430.4	274	gGc/gAc																																																																														
REL	5966	MSKCC	GRCh37	2	61149549	61149549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	62	357	1	ENST00000295025.8:c.1739C>A	p.Pro580Gln	p.P580Q	ENST00000295025	NM_002908.2	580	cCa/cAa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719198	190719198	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	87	253	0	ENST00000441310.2:c.1205del	p.Asn402ThrfsTer6	p.N402Tfs*6	ENST00000441310	NM_000534.4	400	ggA/gg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560813	9560813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	84	301	0	ENST00000353224.5:c.969G>T	p.Glu323Asp	p.E323D	ENST00000353224	NM_177990.2	323	gaG/gaT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31020715	31020715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	56	273	2	ENST00000375687.4:c.1012C>T	p.Arg338Ter	p.R338*	ENST00000375687	NM_015338.5	338	Cga/Tga																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513336	44513336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	100	515	0	ENST00000291552.4:c.599G>A	p.Arg200Gln	p.R200Q	ENST00000291552	NM_006758.2	200	cGg/cAg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37091975	37091975	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	161	285	0	ENST00000231790.2:c.2104-2A>T		p.X702_splice	ENST00000231790	NM_000249.3	702																																																																															
ATR	545	MSKCC	GRCh37	3	142178070	142178072	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ATG	ATG	-			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	44	248	0	ENST00000350721.4:c.7346_7348del	p.Ser2449del	p.S2449del	ENST00000350721	NM_001184.3	2449	tCATgg/tgg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361193	66361193	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	102	222	1	ENST00000273854.3:c.979T>C	p.Tyr327His	p.Y327H	ENST00000273854	NM_004439.5	327	Tat/Cat																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522573	176522573	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	224	589	0	ENST00000292408.4:c.1670A>G	p.Asn557Ser	p.N557S	ENST00000292408	NM_213647.1	557	aAc/aGc																																																																														
NBN	4683	MSKCC	GRCh37	8	90958387	90958387	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	54	305	0	ENST00000265433.3:c.2051A>T	p.Asn684Ile	p.N684I	ENST00000265433	NM_002485.4	684	aAt/aTt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798846	135798846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	75	236	0	ENST00000298552.3:c.397G>A	p.Val133Ile	p.V133I	ENST00000298552	NM_001162426.1	133	Gtc/Atc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391398	139391398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	114	571	0	ENST00000277541.6:c.6793G>A	p.Ala2265Thr	p.A2265T	ENST00000277541	NM_017617.3	2265	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	58	734	0	ENST00000269305.4:c.830G>A	p.Cys277Tyr	p.C277Y	ENST00000269305	NM_001126112.2	277	tGt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	113	481	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
RET	5979	MSKCC	GRCh37	10	43612095	43612095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	50	467	0	ENST00000355710.3:c.2200G>A	p.Glu734Lys	p.E734K	ENST00000355710	NM_020975.4	734	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995477	68995477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	99	489	0	ENST00000288368.4:c.1881G>T	p.Met627Ile	p.M627I	ENST00000288368	NM_024870.2	627	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	447	478	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	795	694	3	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880962	134880962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	457	527	1	ENST00000398015.3:c.1525C>T	p.Arg509Cys	p.R509C	ENST00000398015	NM_004441.4	509	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112154992	112154992	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	565	585	3	ENST00000257430.4:c.1263G>A	p.Trp421Ter	p.W421*	ENST00000257430	NM_000038.5	421	tgG/tgA																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205093	128205093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1594	435	716	2	ENST00000341105.2:c.348G>A	p.Trp116Ter	p.W116*	ENST00000341105	NM_032638.4	116	tgG/tgA																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473708	67473708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	616	551	5	ENST00000327367.4:c.788C>A	p.Pro263His	p.P263H	ENST00000327367	NM_005902.3	263	cCc/cAc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374930	45374930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	224	582	0	ENST00000262160.6:c.913C>T	p.Pro305Ser	p.P305S	ENST00000262160	NM_005901.5	305	Cca/Tca																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411255	63411256	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0030479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	586	351	1	ENST00000330258.3:c.1911_1912del	p.Glu637AspfsTer69	p.E637Dfs*69	ENST00000330258	NM_152424.3	637	gaGAct/gact																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	89	318	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	114	555	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
FANCC	2176	MSKCC	GRCh37	9	97864068	97864068	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	151	371	0	ENST00000289081.3:c.1598G>A	p.Trp533Ter	p.W533*	ENST00000289081	NM_000136.2	533	tGg/tAg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	227	429	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	76	102	1				ENST00000310581	NM_198253.2																																																																																
TSC1	7248	MSKCC	GRCh37	9	135781467	135781467	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	249	367	0	ENST00000298552.3:c.1498C>T	p.Arg500Ter	p.R500*	ENST00000298552	NM_001162426.1	500	Cga/Tga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	180	239	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931471	131931471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	247	352	2	ENST00000265335.6:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000265335		726	Cgt/Tgt																																																																														
BCL6	604	MSKCC	GRCh37	3	187447106	187447106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	257	518	0	ENST00000232014.4:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000232014	NM_001130845.1	363	Cca/Tca																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56477621	56477621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	632	473	0	ENST00000267101.3:c.169G>A	p.Glu57Lys	p.E57K	ENST00000267101	NM_001982.3	57	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872210	45872210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	317	507	0	ENST00000391945.4:c.224G>A	p.Arg75Lys	p.R75K	ENST00000391945	NM_000400.3	75	aGa/aAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349149	89349149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	546	785	2	ENST00000301030.4:c.3801G>C	p.Glu1267Asp	p.E1267D	ENST00000301030	NM_001256183.1	1267	gaG/gaC																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864663	68864663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	98	152	0	ENST00000288368.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000288368	NM_024870.2	12	Gag/Aag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443864	52443864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	299	548	0	ENST00000460680.1:c.31G>A	p.Asp11Asn	p.D11N	ENST00000460680	NM_004656.3	11	Gac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056171	27056172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	256	447	0	ENST00000324856.7:c.1168dup	p.Met390AsnfsTer10	p.M390Nfs*10	ENST00000324856	NM_006015.4	389	-/A																																																																														
DDR2	4921	MSKCC	GRCh37	1	162737043	162737043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	241	377	1	ENST00000367921.3:c.1187G>A	p.Ser396Asn	p.S396N	ENST00000367921	NM_006182.2	396	aGc/aAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115983	8115984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	122	238	0	ENST00000346208.3:c.1330_1331dup	p.Ter444TyrfsTer32	p.*444Yfs*32	ENST00000346208		443	-/TA																																																																														
ATM	472	MSKCC	GRCh37	11	108186598	108186598	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	162	264	0	ENST00000278616.4:c.6055T>C	p.Tyr2019His	p.Y2019H	ENST00000278616	NM_000051.3	2019	Tat/Cat																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061270	38061289	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCCCGGCTTGTCCGGGGA	TTGCCCGGCTTGTCCGGGGA	-			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	333	581	0	ENST00000250448.2:c.700_719del	p.Ser234GlyfsTer52	p.S234Gfs*52	ENST00000250448	NM_004496.3	234	TCCCCGGACAAGCCGGGCAAg/g																																																																														
B2M	567	MSKCC	GRCh37	15	45003760	45003760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	209	319	0	ENST00000558401.1:c.16G>A	p.Ala6Thr	p.A6T	ENST00000558401	NM_004048.2	6	Gcc/Acc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134241	11134241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	335	529	0	ENST00000344626.4:c.2907C>G	p.His969Gln	p.H969Q	ENST00000344626	NM_003072.3	969	caC/caG																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665199	138665210	+	inframe_deletion	In_Frame_Del	DEL	CTCGCCGCCGCC	CTCGCCGCCGCC	-			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	329	645	0	ENST00000330315.3:c.355_366del	p.Gly119_Glu122del	p.G119_E122del	ENST00000330315	NM_023067.3	119	GGCGGCGGCGAG/-																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652081	36652106	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGGGGCCTTGGCCTGCCCAAGCTC	TGCGGGGCCTTGGCCTGCCCAAGCTC	-			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	265	596	0	ENST00000244741.5:c.204_229del	p.Arg69ProfsTer11	p.R69Pfs*11	ENST00000244741	NM_000389.4	68	gTGCGGGGCCTTGGCCTGCCCAAGCTC/g																																																																														
PAX5	5079	MSKCC	GRCh37	9	37002759	37002759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	216	315	0	ENST00000358127.4:c.490G>A	p.Val164Met	p.V164M	ENST00000358127	NM_001280556.1	164	Gtg/Atg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945217	44945217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	274	208	0	ENST00000377967.4:c.3541T>C	p.Cys1181Arg	p.C1181R	ENST00000377967	NM_021140.2	1181	Tgt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	52	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970991	21970991	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	54	495	0	ENST00000304494.5:c.367delC	p.His123IlefsTer23	p.H123Ifs*23	ENST00000304494	NM_000077.4	123	Cat/at																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970991	21970991	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	54	495	0	ENST00000304494.5:c.367delC	p.His123IlefsTer23	p.H123Ifs*23	ENST00000304494	NM_000077.4	123	Cat/at																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	133	973	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975681	26975681	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	56	494	0	ENST00000381527.3:c.1189C>T	p.Gln397Ter	p.Q397*	ENST00000381527	NM_001260.1	397	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577586	7577593	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGTGGT	ATGGTGGT	-			P-0030523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	56	614	0	ENST00000269305.4:c.688_695del	p.Thr230ProfsTer7	p.T230Pfs*7	ENST00000269305	NM_001126112.2	230	ACCACCATc/c																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898710	134898710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	37	324	0	ENST00000398015.3:c.1768G>A	p.Gly590Arg	p.G590R	ENST00000398015	NM_004441.4	590	Ggg/Agg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0030558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	122	388	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	179	509	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44733226	44733226	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	77	145	0	ENST00000377967.4:c.218T>C	p.Leu73Pro	p.L73P	ENST00000377967	NM_021140.2	73	cTg/cCg																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0030586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	195	279	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577545	7577552	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCGCCC	TGCCGCCC	-			P-0030586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	347	525	0	ENST00000269305.4:c.729_736del	p.Met243IlefsTer18	p.M243Ifs*18	ENST00000269305	NM_001126112.2	243	atGGGCGGCAtg/attg																																																																														
ALK	238	MSKCC	GRCh37	2	29448393	29448393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	353	733	0	ENST00000389048.3:c.3106A>G	p.Ile1036Val	p.I1036V	ENST00000389048	NM_004304.4	1036	Atc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0030587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	248	633	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493443	56493443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	61	389	0	ENST00000267101.3:c.2851G>C	p.Asp951His	p.D951H	ENST00000267101	NM_001982.3	951	Gat/Cat																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176153826	176153826	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	25	259	0	ENST00000367669.3:c.410C>T	p.Pro137Leu	p.P137L	ENST00000367669	NM_022457.5	137	cCc/cTc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104352409	104352409	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	42	566	0	ENST00000369902.3:c.525G>T	p.Gln175His	p.Q175H	ENST00000369902	NM_016169.3	175	caG/caT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3824635	3824635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	67	424	0	ENST00000262367.5:c.2218G>A	p.Gly740Arg	p.G740R	ENST00000262367	NM_004380.2	740	Gga/Aga																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216124	7216124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	29	344	0	ENST00000380728.2:c.935G>A	p.Arg312Gln	p.R312Q	ENST00000380728		312	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540295	187540295	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	40	440	0	ENST00000441802.2:c.7445T>C	p.Val2482Ala	p.V2482A	ENST00000441802	NM_005245.3	2482	gTa/gCa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342796	87342796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	170	444	0	ENST00000277120.3:c.1081C>G	p.Leu361Val	p.L361V	ENST00000277120		361	Cta/Gta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	185	520	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169853	32169853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	203	547	0	ENST00000375023.3:c.3755C>T	p.Thr1252Ile	p.T1252I	ENST00000375023	NM_004557.3	1252	aCt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579442	7579442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	228	721	0	ENST00000269305.4:c.245del	p.Pro82ArgfsTer41	p.P82Rfs*41	ENST00000269305	NM_001126112.2	82	cCg/cg																																																																														
MGA	23269	MSKCC	GRCh37	15	42054416	42054416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	78	395	0	ENST00000219905.7:c.7600G>A	p.Gly2534Arg	p.G2534R	ENST00000219905	NM_001164273.1	2534	Gga/Aga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0030638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	212	452	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	250	568	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	128	444	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692964	89692964	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	179	484	0	ENST00000371953.3:c.448G>T	p.Glu150Ter	p.E150*	ENST00000371953	NM_000314.4	150	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105512	27105512	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0030638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	57	306	0	ENST00000324856.7:c.5125-2A>C		p.X1709_splice	ENST00000324856	NM_006015.4	1709																																																																															
MUTYH	4595	MSKCC	GRCh37	1	45797429	45797429	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151316420		P-0030638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	230	529	0	ENST00000372115.3:c.1048C>T	p.Arg350Cys	p.R350C	ENST00000372115	NM_001048171.1	350	Cgc/Tgc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941230	36941230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	210	622	0	ENST00000361632.4:c.109C>T	p.His37Tyr	p.H37Y	ENST00000361632		37	Cac/Tac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692967	89692968	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0030638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	69	483	2	ENST00000371953.3:c.451_452delinsTT	p.Ala151Phe	p.A151F	ENST00000371953	NM_000314.4	151	GCc/TTc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948658	71948658	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	391	558	0	ENST00000298229.2:c.3370del	p.Leu1124CysfsTer7	p.L1124Cfs*7	ENST00000298229	NM_001567.3	1124	Ctg/tg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650629	67650648	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACTCCATCCTTTCTCTAGG	TACTCCATCCTTTCTCTAGG	-			P-0030638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	26	221	0	ENST00000264010.4:c.953-14_958del		p.X318_splice	ENST00000264010	NM_006565.3	318																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589604	67589605	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCAAGA			P-0030638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	61	307	0	ENST00000274335.5:c.1368_1373dup	p.Gln457_Glu458insAspGln	p.Q457_E458insDQ	ENST00000274335		456	ttt/ttTCAAGAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	111	508	1	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943658	9943658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	70	560	1	ENST00000330684.3:c.1283C>T	p.Thr428Met	p.T428M	ENST00000330684	NM_001134407.1	428	aCg/aTg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060806	38060807	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GTAGTGGGGGTCCCCTTTCAGGTGCAGCTGGGACTCGTGGG			P-0030645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	99	870	0	ENST00000250448.2:c.1142_1182dup	p.Ser395ProfsTer8	p.S395Pfs*8	ENST00000250448	NM_004496.3	394	-/CCCACGAGTCCCAGCTGCACCTGAAAGGGGACCCCCACTAC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	105	517	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0030688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	100	418	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729181	66729181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	114	656	0	ENST00000307102.5:c.389A>G	p.Tyr130Cys	p.Y130C	ENST00000307102	NM_002755.3	130	tAt/tGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29552249	29552250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAAGGGAACTCCTCT			P-0030688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	26	464	0	ENST00000358273.4:c.1984_1999dup	p.Met667LysfsTer8	p.M667Kfs*8	ENST00000358273	NM_001042492.2	661	gga/ggAAAAGGGAACTCCTCTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	179	570	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	161	416	2	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
MAX	4149	MSKCC	GRCh37	14	65560493	65560493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	157	419	0	ENST00000358664.4:c.104G>T	p.Arg35Leu	p.R35L	ENST00000358664	NM_002382.4	35	cGt/cTt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111140	193111140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	181	435	1	ENST00000367435.3:c.673G>T	p.Val225Phe	p.V225F	ENST00000367435	NM_024529.4	225	Gtc/Ttc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41228538	41228538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	98	535	0	ENST00000357654.3:c.4451C>A	p.Ser1484Tyr	p.S1484Y	ENST00000357654	NM_007294.3	1484	tCt/tAt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41228619	41228619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	66	394	0	ENST00000357654.3:c.4370C>T	p.Ser1457Leu	p.S1457L	ENST00000357654	NM_007294.3	1457	tCa/tTa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41228631	41228631	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	54	358	0	ENST00000357654.3:c.4358C>T	p.Ala1453Val	p.A1453V	ENST00000357654	NM_007294.3	1453	gCa/gTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212293195	212293195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	39	335	0	ENST00000342788.4:c.2657G>T	p.Trp886Leu	p.W886L	ENST00000342788	NM_005235.2	886	tGg/tTg																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346413	152346413	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	80	395	0	ENST00000359321.1:c.157G>T	p.Gly53Ter	p.G53*	ENST00000359321	NM_005431.1	53	Gga/Tga																																																																														
ABL1	25	MSKCC	GRCh37	9	133760603	133760603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	95	637	0	ENST00000318560.5:c.2926A>G	p.Ile976Val	p.I976V	ENST00000318560	NM_005157.4	976	Atc/Gtc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	137	300	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391024	89391024	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	118	365	0	ENST00000336596.2:c.1095delA	p.Lys365AsnfsTer6	p.K365Nfs*6	ENST00000336596	NM_005233.5	364	Aaa/aa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	101	247	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	48	218	0	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289863	15289863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201680145		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	59	355	0	ENST00000263388.2:c.3691C>T	p.Arg1231Cys	p.R1231C	ENST00000263388	NM_000435.2	1231	Cgt/Tgt																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	104	322	2	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	19	80	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	83	315	3	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664989	138664989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	34	82	0	ENST00000330315.3:c.576del	p.Lys193SerfsTer78	p.K193Sfs*78	ENST00000330315	NM_023067.3	192	ccC/cc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	70	216	0	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	85	430	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	104	297	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	106	342	1	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675170	30675172	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	116	393	0	ENST00000376406.3:c.3073_3075delAAG	p.Lys1025del	p.K1025del	ENST00000376406	NM_014641.2	1025	AAG/-																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	166	227	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132617	11132617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	127	317	1	ENST00000344626.4:c.2833G>A	p.Ala945Thr	p.A945T	ENST00000344626	NM_003072.3	945	Gca/Aca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	57	160	2	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	59	232	0	ENST00000307078.5:c.1214_1215delAG	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430901	181430901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	118	383	0	ENST00000325404.1:c.758del	p.Pro253LeufsTer21	p.P253Lfs*21	ENST00000325404	NM_003106.3	251	agC/ag																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749374	41749374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	43	162	0	ENST00000226382.2:c.421C>T	p.Arg141Ter	p.R141*	ENST00000226382	NM_003924.3	141	Cga/Tga																																																																														
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	104	334	1	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	127	252	4	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085825	16085825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	82	263	0	ENST00000281043.3:c.1005del	p.Ser336LeufsTer15	p.S336Lfs*15	ENST00000281043	NM_005378.4	334	gCc/gc																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84383944	84383944	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	122	308	0	ENST00000321945.7:c.908del	p.Asn303IlefsTer17	p.N303Ifs*17	ENST00000321945	NM_139076.2	303	aAt/at																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792546	33792546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	17	38	0	ENST00000498907.2:c.775G>A	p.Ala259Thr	p.A259T	ENST00000498907	NM_004364.3	259	Gcg/Acg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	105	294	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																														
CD79A	973	MSKCC	GRCh37	19	42383707	42383707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	104	315	1	ENST00000221972.3:c.482C>T	p.Thr161Met	p.T161M	ENST00000221972	NM_021601.3	161	aCg/aTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508257	106508257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	54	185	0	ENST00000359195.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000359195	NM_002649.2	84	gCg/gTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974830	15974830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	81	247	0	ENST00000268712.3:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000268712	NM_006311.3	1349	Cgt/Tgt																																																																														
EP300	2033	MSKCC	GRCh37	22	41564569	41564569	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	36	359	0	ENST00000263253.7:c.3994delA	p.Thr1332ProfsTer4	p.T1332Pfs*4	ENST00000263253	NM_001429.3	1331	Aaa/aa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	271	462	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	60	217	2	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
RAB35	11021	MSKCC	GRCh37	12	120535147	120535147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	215	278	0	ENST00000229340.5:c.508C>T	p.Arg170Ter	p.R170*	ENST00000229340	NM_006861.6	170	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221756	36221756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	108	358	0	ENST00000222270.7:c.5425G>A	p.Ala1809Thr	p.A1809T	ENST00000222270	NM_014727.1	1809	Gcc/Acc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176118142	176118143	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	65	211	0	ENST00000367669.3:c.830_831del	p.Glu277AlafsTer17	p.E277Afs*17	ENST00000367669	NM_022457.5	277	gAG/g																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	107	399	0	ENST00000298229.2:c.2927dupC	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	111	335	0	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570180	95570180	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150514959		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	79	178	1	ENST00000343455.3:c.3553G>A	p.Ala1185Thr	p.A1185T	ENST00000343455	NM_177438.2	1185	Gcc/Acc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	364555	364555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	121	321	0	ENST00000262320.3:c.1007C>T	p.Thr336Met	p.T336M	ENST00000262320	NM_003502.3	336	aCg/aTg																																																																														
ALK	238	MSKCC	GRCh37	2	30143140	30143140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	82	189	0	ENST00000389048.3:c.386G>A	p.Gly129Asp	p.G129D	ENST00000389048	NM_004304.4	129	gGc/gAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914175	32914175	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146351301		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	131	292	1	ENST00000380152.3:c.5683G>A	p.Glu1895Lys	p.E1895K	ENST00000380152		1895	Gag/Aag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278070	18278070	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	127	425	0	ENST00000222254.8:c.1690A>G	p.Lys564Glu	p.K564E	ENST00000222254	NM_005027.3	564	Aag/Gag																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264407	46264407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	96	282	0	ENST00000371998.3:c.1454G>A	p.Arg485His	p.R485H	ENST00000371998		485	cGt/cAt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371900	55371900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	36	99	0	ENST00000297316.4:c.590C>T	p.Pro197Leu	p.P197L	ENST00000297316	NM_022454.3	197	cCg/cTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351844	89351844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	170	506	1	ENST00000301030.4:c.1106A>G	p.Lys369Arg	p.K369R	ENST00000301030	NM_001256183.1	369	aAg/aGg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223138	5223138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	71	234	0	ENST00000357368.4:c.2665C>T	p.Arg889Cys	p.R889C	ENST00000357368	NM_002850.3	889	Cgc/Tgc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464968	120464968	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	105	334	0	ENST00000256646.2:c.5104C>T	p.Arg1702Ter	p.R1702*	ENST00000256646	NM_024408.3	1702	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120471815	120471815	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	77	236	0	ENST00000256646.2:c.3676A>G	p.Ile1226Val	p.I1226V	ENST00000256646	NM_024408.3	1226	Att/Gtt																																																																														
TET1	80312	MSKCC	GRCh37	10	70450870	70450870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	95	237	0	ENST00000373644.4:c.5710C>T	p.Leu1904Phe	p.L1904F	ENST00000373644	NM_030625.2	1904	Ctt/Ttt																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154299	2154299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146962483		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	69	292	1	ENST00000434045.2:c.629G>A	p.Arg210His	p.R210H	ENST00000434045	NM_001127598.1	210	cGt/cAt																																																																														
WT1	7490	MSKCC	GRCh37	11	32456491	32456491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	28	59	1	ENST00000332351.3:c.401C>T	p.Pro134Leu	p.P134L	ENST00000332351	NM_024426.4	134	cCg/cTg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998597	100998597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	91	255	0	ENST00000325455.5:c.1205G>A	p.Arg402His	p.R402H	ENST00000325455	NM_001202474.3	402	cGt/cAt																																																																														
CBL	867	MSKCC	GRCh37	11	119077259	119077259	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	95	246	0	ENST00000264033.4:c.136del	p.His46ThrfsTer32	p.H46Tfs*32	ENST00000264033	NM_005188.3	44	agC/ag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123622	46123622	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	23	148	0	ENST00000334344.6:c.3G>A	p.Met1?	p.M1?	ENST00000334344	NM_152641.2	1	atG/atA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432375	49432375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	91	362	1	ENST00000301067.7:c.8764C>T	p.Arg2922Trp	p.R2922W	ENST00000301067	NM_003482.3	2922	Cgg/Tgg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856008	111856008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	38	212	1	ENST00000341259.2:c.59C>T	p.Ala20Val	p.A20V	ENST00000341259	NM_005475.2	20	gCg/gTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118814	115118814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	35	280	0	ENST00000257566.3:c.527C>T	p.Ala176Val	p.A176V	ENST00000257566	NM_016569.3	176	gCc/gTc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426787	121426787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	114	329	0	ENST00000257555.6:c.478G>A	p.Ala160Thr	p.A160T	ENST00000257555		160	Gcc/Acc																																																																														
POLE	5426	MSKCC	GRCh37	12	133245404	133245404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	81	321	0	ENST00000320574.5:c.1916G>A	p.Arg639His	p.R639H	ENST00000320574	NM_006231.2	639	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434458	110434458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	58	190	0	ENST00000375856.3:c.3943C>T	p.Pro1315Ser	p.P1315S	ENST00000375856	NM_003749.2	1315	Ccc/Tcc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574683	95574683	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	96	204	0	ENST00000343455.3:c.2414T>C	p.Leu805Pro	p.L805P	ENST00000343455	NM_177438.2	805	cTg/cCg																																																																														
RAD51	5888	MSKCC	GRCh37	15	41011085	41011085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	99	326	0	ENST00000267868.3:c.518C>T	p.Ala173Val	p.A173V	ENST00000267868	NM_002875.4	173	gCa/gTa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250803	99250803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	50	201	2	ENST00000268035.6:c.107G>A	p.Gly36Asp	p.G36D	ENST00000268035	NM_000875.3	36	gGc/gAc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99459973	99459973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	87	298	0	ENST00000268035.6:c.2069A>G	p.Glu690Gly	p.E690G	ENST00000268035	NM_000875.3	690	gAg/gGg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500433	99500433	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	47	287	0	ENST00000268035.6:c.3866A>C	p.Glu1289Ala	p.E1289A	ENST00000268035	NM_000875.3	1289	gAg/gCg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929486	81929488	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	106	347	0	ENST00000359376.3:c.1151_1153del	p.Asp384del	p.D384del	ENST00000359376	NM_002661.3	383	GAC/-																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349946	89349946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	144	358	0	ENST00000301030.4:c.3004C>T	p.Arg1002Trp	p.R1002W	ENST00000301030	NM_001256183.1	1002	Cgg/Tgg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217622	7217622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	98	290	0	ENST00000380728.2:c.305G>A	p.Arg102Gln	p.R102Q	ENST00000380728		102	cGa/cAa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40485766	40485766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	97	336	0	ENST00000264657.5:c.974G>A	p.Arg325Gln	p.R325Q	ENST00000264657	NM_139276.2	325	cGg/cAg																																																																														
YES1	7525	MSKCC	GRCh37	18	743328	743328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	135	337	0	ENST00000314574.4:c.812A>G	p.Glu271Gly	p.E271G	ENST00000314574	NM_005433.3	271	gAa/gGa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39535259	39535259	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	G	G	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	69	130	1	ENST00000262039.4:c.7del	p.Glu3LysfsTer21	p.E3Kfs*21	ENST00000262039	NM_002647.2	1	atG/at																																																																														
MALT1	10892	MSKCC	GRCh37	18	56376693	56376694	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	145	378	0	ENST00000348428.3:c.737dup	p.Leu246PhefsTer19	p.L246Ffs*19	ENST00000348428	NM_006785.3	245	gtt/gTtt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222382	2222382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	89	210	0	ENST00000398665.3:c.3214C>T	p.Arg1072Cys	p.R1072C	ENST00000398665	NM_032482.2	1072	Cgt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15297763	15297763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	127	309	0	ENST00000263388.2:c.1877G>A	p.Ser626Asn	p.S626N	ENST00000263388	NM_000435.2	626	aGc/aAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298074	15298074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	121	294	0	ENST00000263388.2:c.1682A>G	p.Asp561Gly	p.D561G	ENST00000263388	NM_000435.2	561	gAt/gGt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367046	15367046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	16	192	0	ENST00000263377.2:c.1580C>T	p.Ala527Val	p.A527V	ENST00000263377	NM_058243.2	527	gCc/gTc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379841	17379841	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	154	371	0	ENST00000359435.4:c.230del	p.Pro77ArgfsTer19	p.P77Rfs*19	ENST00000359435	NM_001033549.1	76	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218522	36218522	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	85	210	0	ENST00000222270.7:c.4301A>G	p.Gln1434Arg	p.Q1434R	ENST00000222270	NM_014727.1	1434	cAg/cGg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797894	42797894	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	78	305	0	ENST00000575354.2:c.3949del	p.Asp1317ThrfsTer15	p.D1317Tfs*15	ENST00000575354	NM_015125.3	1316	Ggg/gg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198281502	198281502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	40	409	0	ENST00000335508.6:c.629C>T	p.Ala210Val	p.A210V	ENST00000335508	NM_012433.2	210	gCc/gTc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42839714	42839714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	113	305	0	ENST00000398585.3:c.1525G>A	p.Gly509Arg	p.G509R	ENST00000398585	NM_001135099.1	509	Gga/Aga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47144844	47144844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	64	381	0	ENST00000409792.3:c.4909A>G	p.Thr1637Ala	p.T1637A	ENST00000409792	NM_014159.6	1637	Acc/Gcc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998192	169998192	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	152	385	0	ENST00000295797.4:c.882+1G>A		p.X294_splice	ENST00000295797	NM_002740.5	294																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66197694	66197694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	84	270	0	ENST00000273854.3:c.3005T>C	p.Leu1002Ser	p.L1002S	ENST00000273854	NM_004439.5	1002	tTg/tCg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31493321	31493322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	61	249	0	ENST00000344624.3:c.1834dupC	p.Leu612ProfsTer8	p.L612Pfs*8	ENST00000344624		612	ctg/cCtg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576437	67576437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141981005		P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	114	279	0	ENST00000274335.5:c.716C>T	p.Thr239Met	p.T239M	ENST00000274335		239	aCg/aTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79950656	79950658	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	25	204	0	ENST00000265081.6:c.118_120del	p.Ser40del	p.S40del	ENST00000265081	NM_002439.4	37	aCCTcc/acc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046022	180046022	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	28	40	0	ENST00000261937.6:c.2849C>T	p.Ala950Val	p.A950V	ENST00000261937	NM_182925.4	950	gCg/gTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048231	180048231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	109	353	1	ENST00000261937.6:c.2042C>T	p.Thr681Met	p.T681M	ENST00000261937	NM_182925.4	681	aCg/aTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128850897	128850897	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	68	318	1	ENST00000249373.3:c.1744A>T	p.Asn582Tyr	p.N582Y	ENST00000249373	NM_005631.4	582	Aac/Tac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859494	151859494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	71	246	0	ENST00000262189.6:c.11168C>T	p.Ala3723Val	p.A3723V	ENST00000262189	NM_170606.2	3723	gCt/gTt																																																																														
RAD21	5885	MSKCC	GRCh37	8	117866524	117866525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	126	297	0	ENST00000297338.2:c.1120dup	p.Ser374PhefsTer10	p.S374Ffs*10	ENST00000297338	NM_006265.2	374	tct/tTct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971031	21971031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	67	143	0	ENST00000361570.3:c.493C>A	p.Leu165Met	p.L165M	ENST00000361570	NM_058195.3	165	Ctg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971031	21971031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	67	143	0	ENST00000361570.3:c.493C>A	p.Leu165Met	p.L165M	ENST00000361570	NM_058195.3	165	Ctg/Atg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393614	139393614	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	89	337	0	ENST00000277541.6:c.6032T>C	p.Leu2011Pro	p.L2011P	ENST00000277541	NM_017617.3	2011	cTg/cCg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402418	139402418	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	80	316	1	ENST00000277541.6:c.3499T>C	p.Tyr1167His	p.Y1167H	ENST00000277541	NM_017617.3	1167	Tac/Cac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918250	44918250	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	63	280	0	ENST00000377967.4:c.876-1G>T		p.X292_splice	ENST00000377967	NM_021140.2	292																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53222804	53222804	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	146	327	0	ENST00000375401.3:c.4132T>G	p.Ser1378Ala	p.S1378A	ENST00000375401	NM_004187.3	1378	Tcc/Gcc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239600	53239600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	89	270	0	ENST00000375401.3:c.1742T>C	p.Val581Ala	p.V581A	ENST00000375401	NM_004187.3	581	gTg/gCg																																																																														
ATRX	546	MSKCC	GRCh37	X	76938920	76938920	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	118	371	0	ENST00000373344.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000373344	NM_000489.3	610	Caa/Taa																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271526	26271527	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0030708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	72	184	0	ENST00000305910.3:c.86_87delinsA	p.Ser29LysfsTer8	p.S29Kfs*8	ENST00000305910	NM_003534.2	29	aGC/aA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	119	615	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	127	612	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
PARP1	142	MSKCC	GRCh37	1	226590002	226590002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	59	592	1	ENST00000366794.5:c.199C>T	p.Pro67Ser	p.P67S	ENST00000366794	NM_001618.3	67	Cct/Tct																																																																														
IDH2	3418	MSKCC	GRCh37	15	90628093	90628093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	58	725	0	ENST00000330062.3:c.1226G>C	p.Gly409Ala	p.G409A	ENST00000330062	NM_002168.2	409	gGa/gCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	128	309	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295196	1295196	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0030722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	120	259	0				ENST00000310581	NM_198253.2																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38060845	38060845	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	46	647	0	ENST00000250448.2:c.1144del	p.His382ThrfsTer7	p.H382Tfs*7	ENST00000250448	NM_004496.3	382	Cac/ac																																																																														
MAX	4149	MSKCC	GRCh37	14	65568280	65568280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	25	321	0	ENST00000358664.4:c.47C>T	p.Pro16Leu	p.P16L	ENST00000358664	NM_002382.4	16	cCg/cTg																																																																														
ATR	545	MSKCC	GRCh37	3	142281884	142281902	+	frameshift_variant	Frame_Shift_Del	DEL	GTGTAACAAATGACAGGAG	GTGTAACAAATGACAGGAG	-			P-0030725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	21	453	0	ENST00000350721.4:c.342_360del	p.Ser115ArgfsTer44	p.S115Rfs*44	ENST00000350721	NM_001184.3	114	ccCTCCTGTCATTTGTTACAC/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522405	157522405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	27	529	0	ENST00000346085.5:c.4677C>G	p.Phe1559Leu	p.F1559L	ENST00000346085	NM_020732.3	1559	ttC/ttG																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	1850	740	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	209	484	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139873	55139873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	251	466	0	ENST00000257290.5:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000257290	NM_006206.4	512	Cga/Tga																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176105675	176105675	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	251	512	0	ENST00000367669.3:c.840A>C	p.Glu280Asp	p.E280D	ENST00000367669	NM_022457.5	280	gaA/gaC																																																																														
CDH1	999	MSKCC	GRCh37	16	68853186	68853186	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0030729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	324	531	0	ENST00000261769.5:c.1569T>G	p.Tyr523Ter	p.Y523*	ENST00000261769	NM_004360.3	523	taT/taG																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120227	70120236	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGCAGCA	AGCAGCAGCA	-			P-0030729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	309	685	0	ENST00000245479.2:c.1229_1238del	p.Gln410ProfsTer57	p.Q410Pfs*57	ENST00000245479	NM_000346.3	410	cAGCAGCAGCAc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	966	866	0	ENST00000269305.4:c.511del	p.Glu171ArgfsTer3	p.E171Rfs*3	ENST00000269305	NM_001126112.2	171	Gag/ag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435219	110435219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	124	411	2	ENST00000375856.3:c.3182C>T	p.Ser1061Leu	p.S1061L	ENST00000375856	NM_003749.2	1061	tCg/tTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563296	21563296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	320	807	0	ENST00000382592.4:c.623C>T	p.Pro208Leu	p.P208L	ENST00000382592	NM_014572.2	208	cCg/cTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48954379	48954379	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	744	512	0	ENST00000267163.4:c.1498+2T>G		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001334	29001334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	169	526	0	ENST00000282397.4:c.1398G>C	p.Trp466Cys	p.W466C	ENST00000282397	NM_002019.4	466	tgG/tgC																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988554	36988554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	355	818	2	ENST00000354822.5:c.99G>A	p.Met33Ile	p.M33I	ENST00000354822	NM_001079668.2	33	atG/atA																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628428	86628428	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	293	423	0	ENST00000274376.6:c.801del	p.Lys267AsnfsTer12	p.K267Nfs*12	ENST00000274376	NM_002890.2	266	gAa/ga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517301	157517301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	389	547	1	ENST00000346085.5:c.3865C>T	p.Pro1289Ser	p.P1289S	ENST00000346085	NM_020732.3	1289	Cct/Tct																																																																														
HGF	3082	MSKCC	GRCh37	7	81355313	81355313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	136	440	0	ENST00000222390.5:c.1061G>A	p.Cys354Tyr	p.C354Y	ENST00000222390	NM_000601.4	354	tGc/tAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	85	207	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0030738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	243	622	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	116	285	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	116	285	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	116	285	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8497264	8497264	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	32	460	0	ENST00000356435.5:c.2327A>G	p.Glu776Gly	p.E776G	ENST00000356435		776	gAa/gGa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0030739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	91	448	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0030739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	76	491	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	76	695	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937219	36937219	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140159756		P-0030739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	94	740	1	ENST00000361632.4:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000361632		367	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	80	747	0	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																														
ATM	472	MSKCC	GRCh37	11	108188125	108188125	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	75	445	0	ENST00000278616.4:c.6224A>T	p.His2075Leu	p.H2075L	ENST00000278616	NM_000051.3	2075	cAt/cTt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226352	2226352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	83	695	1	ENST00000398665.3:c.3832G>A	p.Ala1278Thr	p.A1278T	ENST00000398665	NM_032482.2	1278	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	316	611	1	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610208	10610208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	226	622	0	ENST00000171111.5:c.502G>T	p.Val168Phe	p.V168F	ENST00000171111	NM_203500.1	168	Gtc/Ttc																																																																														
MGA	23269	MSKCC	GRCh37	15	42028585	42028585	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	151	612	0	ENST00000219905.7:c.4123G>C	p.Glu1375Gln	p.E1375Q	ENST00000219905	NM_001164273.1	1375	Gag/Cag																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138198246	138198246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200840068		P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	56	290	0	ENST00000237289.4:c.839G>A	p.Arg280Gln	p.R280Q	ENST00000237289	NM_001270507.1	280	cGg/cAg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233316	69233316	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	146	262	0	ENST00000462284.1:c.1181C>G	p.Ser394Ter	p.S394*	ENST00000462284	NM_002392.5	394	tCa/tGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892214	9892215	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	234	570	0	ENST00000330684.3:c.2275dup	p.Thr759AsnfsTer27	p.T759Nfs*27	ENST00000330684	NM_001134407.1	759	acc/aAcc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11101931	11101931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	80	673	1	ENST00000344626.4:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000344626	NM_003072.3	451	Cgc/Tgc																																																																														
ALK	238	MSKCC	GRCh37	2	29416536	29416536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	81	545	2	ENST00000389048.3:c.4417G>A	p.Gly1473Arg	p.G1473R	ENST00000389048	NM_004304.4	1473	Ggg/Agg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39726936	39726936	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	75	326	0	ENST00000361337.2:c.934C>G	p.Gln312Glu	p.Q312E	ENST00000361337	NM_003286.2	312	Cag/Gag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267295	41267295	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	42	369	0	ENST00000349496.5:c.879C>G	p.Phe293Leu	p.F293L	ENST00000349496	NM_001904.3	293	ttC/ttG																																																																														
ATR	545	MSKCC	GRCh37	3	142268517	142268517	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	72	307	0	ENST00000350721.4:c.2977-2A>C		p.X993_splice	ENST00000350721	NM_001184.3	993																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099127	157099127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	41	263	1	ENST00000346085.5:c.64G>A	p.Glu22Lys	p.E22K	ENST00000346085	NM_020732.3	22	Gag/Aag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099149	157099149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	45	316	0	ENST00000346085.5:c.86G>A	p.Gly29Glu	p.G29E	ENST00000346085	NM_020732.3	29	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874065	151874065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	59	479	0	ENST00000262189.6:c.8473G>A	p.Glu2825Lys	p.E2825K	ENST00000262189	NM_170606.2	2825	Gaa/Aaa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193121548	193121548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	66	320	0	ENST00000367435.3:c.946C>T	p.His316Tyr	p.H316Y	ENST00000367435	NM_024529.4	316	Cat/Tat																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518630	69518630	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	119	697	0	ENST00000294312.3:c.15T>A	p.Cys5Ter	p.C5*	ENST00000294312	NM_005117.2	5	tgT/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	96	404	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133218357	133218357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	100	600	1	ENST00000320574.5:c.5254G>A	p.Asp1752Asn	p.D1752N	ENST00000320574	NM_006231.2	1752	Gac/Aac																																																																														
FLT1	2321	MSKCC	GRCh37	13	28919673	28919673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	51	396	0	ENST00000282397.4:c.2264C>A	p.Ser755Tyr	p.S755Y	ENST00000282397	NM_002019.4	755	tCt/tAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041881	42041881	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	98	466	1	ENST00000219905.7:c.6076G>T	p.Glu2026Ter	p.E2026*	ENST00000219905	NM_001164273.1	2026	Gaa/Taa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679798	88679798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	101	504	0	ENST00000360948.2:c.665G>C	p.Arg222Pro	p.R222P	ENST00000360948	NM_001012338.2	222	cGa/cCa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640135	3640135	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	148	769	0	ENST00000294008.3:c.3504G>C	p.Met1168Ile	p.M1168I	ENST00000294008	NM_032444.2	1168	atG/atC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	160	597	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
CCNE1	898	MSKCC	GRCh37	19	30303891	30303891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	105	654	0	ENST00000262643.3:c.127G>C	p.Asp43His	p.D43H	ENST00000262643	NM_001238.2	43	Gat/Cat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267382	198267382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	73	465	1	ENST00000335508.6:c.1975C>A	p.Gln659Lys	p.Q659K	ENST00000335508	NM_012433.2	659	Caa/Aaa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520153	9520153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	63	430	0	ENST00000353224.5:c.2116C>A	p.Pro706Thr	p.P706T	ENST00000353224	NM_177990.2	706	Ccg/Acg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	130	559	1	ENST00000373198.4:c.3659G>T	p.Arg1220Leu	p.R1220L	ENST00000373198	NM_133170.3	1220	cGg/cTg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119720978	119720978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	69	480	0	ENST00000316626.5:c.197C>T	p.Ser66Leu	p.S66L	ENST00000316626		66	tCa/tTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	123	556	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721988	176721988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	64	412	0	ENST00000439151.2:c.7619C>G	p.Ser2540Cys	p.S2540C	ENST00000439151	NM_022455.4	2540	tCt/tGt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068097	94068097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	34	325	0	ENST00000369303.4:c.865C>G	p.Gln289Glu	p.Q289E	ENST00000369303	NM_004440.3	289	Caa/Gaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522637	106522637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	55	393	0	ENST00000359195.3:c.2614A>G	p.Thr872Ala	p.T872A	ENST00000359195	NM_002649.2	872	Act/Gct																																																																														
MET	4233	MSKCC	GRCh37	7	116371803	116371803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	103	404	0	ENST00000397752.3:c.1282G>C	p.Asp428His	p.D428H	ENST00000397752	NM_000245.2	428	Gac/Cac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151893037	151893037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	59	388	0	ENST00000262189.6:c.4333C>G	p.Leu1445Val	p.L1445V	ENST00000262189	NM_170606.2	1445	Ctt/Gtt																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538982	23538982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	126	452	0	ENST00000380871.4:c.457G>C	p.Glu153Gln	p.E153Q	ENST00000380871	NM_006167.3	153	Gaa/Caa																																																																														
TEK	7010	MSKCC	GRCh37	9	27157993	27157993	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	82	585	0	ENST00000380036.4:c.217G>T	p.Glu73Ter	p.E73*	ENST00000380036	NM_000459.3	73	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426788	49426789	+	missense_variant	Missense_Mutation	DNP	AA	AA	TT			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	10	317	0	ENST00000301067.7:c.11699_11700inv	p.Leu3900Gln	p.L3900Q	ENST00000301067	NM_003482.3	3900	cTT/cAA																																																																														
MGA	23269	MSKCC	GRCh37	15	42054402	42054402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	19	418	0	ENST00000219905.7:c.7586G>A	p.Arg2529Lys	p.R2529K	ENST00000219905	NM_001164273.1	2529	aGa/aAa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14026103	14026103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	10	401	0	ENST00000311895.7:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000311895	NM_005236.2	355	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992630	72992630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	16	371	2	ENST00000268489.5:c.1415C>A	p.Ala472Glu	p.A472E	ENST00000268489	NM_006885.3	472	gCg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	23	726	3	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138376634	138376634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	12	530	0	ENST00000289153.2:c.2840C>G	p.Ser947Cys	p.S947C	ENST00000289153	NM_006219.2	947	tCt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1278791	1278791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	11	586	0	ENST00000310581.5:c.2251G>T	p.Ala751Ser	p.A751S	ENST00000310581	NM_198253.2	751	Gcc/Tcc																																																																														
NPM1	4869	MSKCC	GRCh37	5	170817081	170817081	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	11	533	0	ENST00000296930.5:c.85T>G	p.Tyr29Asp	p.Y29D	ENST00000296930	NM_002520.6	29	Tat/Gat																																																																														
NPM1	4869	MSKCC	GRCh37	5	170827907	170827909	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	30	703	0	ENST00000296930.5:c.652_654del	p.Ser218del	p.S218del	ENST00000296930	NM_002520.6	216	cCATca/cca																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467863	50467863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	42	426	0	ENST00000331340.3:c.1098G>C	p.Gln366His	p.Q366H	ENST00000331340	NM_006060.4	366	caG/caC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249028	55249028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	181	558	0	ENST00000275493.2:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000275493	NM_005228.3	776	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	131	659	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	265	499	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	265	499	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	265	499	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044568	47044568	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	32	862	0	ENST00000329236.7:c.1831A>C	p.Thr611Pro	p.T611P	ENST00000329236	NM_001204466.1	611	Act/Cct																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652359	48652359	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141479621		P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	20	930	2	ENST00000376670.3:c.1030G>A	p.Gly344Arg	p.G344R	ENST00000376670	NM_002049.3	344	Ggg/Agg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	G			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	44	754	1	ENST00000329236.7:c.201+1688T>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																
KDM5A	5927	MSKCC	GRCh37	12	419049	419049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	28	588	0	ENST00000399788.2:c.3298G>A	p.Glu1100Lys	p.E1100K	ENST00000399788	NM_001042603.1	1100	Gaa/Aaa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0030818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	202	332	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644703	134644703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	122	509	1	ENST00000398015.3:c.104C>T	p.Thr35Met	p.T35M	ENST00000398015	NM_004441.4	35	aCg/aTg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141568623	141568623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	169	657	0	ENST00000220592.5:c.839G>C	p.Arg280Pro	p.R280P	ENST00000220592	NM_012154.3	280	cGc/cCc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099982	157099993	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGC	GGCGGCGGCGGC	-			P-0030818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	61	275	0	ENST00000346085.5:c.933_944del	p.Gly316_Gly319del	p.G316_G319del	ENST00000346085	NM_020732.3	307	GGCGGCGGCGGC/-																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249013	55249013	+	protein_altering_variant	In_Frame_Ins	INS	A	A	GGGG			P-0030818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	452	578	0	ENST00000275493.2:c.2311delinsGGGG	p.Asn771delinsGlyAsp	p.N771delinsGD	ENST00000275493	NM_005228.3	771	Aac/GGGGac																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	72	344	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	620	892	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	96	487	0	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223300	5223300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141070507		P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	65	686	1	ENST00000357368.4:c.2503C>T	p.Arg835Cys	p.R835C	ENST00000357368	NM_002850.3	835	Cgc/Tgc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347934	73347934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	66	230	0	ENST00000377767.4:c.1127C>T	p.Ala376Val	p.A376V	ENST00000377767	NM_014953.3	376	gCt/gTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028025	69028025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200550325		P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	94	516	1	ENST00000288368.4:c.3184C>T	p.Arg1062Cys	p.R1062C	ENST00000288368	NM_024870.2	1062	Cgt/Tgt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273269	115273269	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	224	463	0	ENST00000438362.2:c.1189G>A	p.Gly397Ser	p.G397S	ENST00000438362	NM_001242891.1	397	Ggt/Agt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681694	30681694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	102	505	1	ENST00000376406.3:c.403G>A	p.Val135Ile	p.V135I	ENST00000376406	NM_014641.2	135	Gtc/Atc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713546	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0030846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	188	450	0	ENST00000359013.4:c.946_948delAAG	p.Lys316del	p.K316del	ENST00000359013	NM_001024847.2	315	gAGAag/gag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911444	134911444	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149160192		P-0030846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	131	579	1	ENST00000398015.3:c.1909C>T	p.Arg637Cys	p.R637C	ENST00000398015	NM_004441.4	637	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0030846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	102	577	0	ENST00000256078.4:c.180_181inv	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggGAaa																																																																														
FH	2271	MSKCC	GRCh37	1	241663812	241663812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	56	252	0	ENST00000366560.3:c.1315C>T	p.Gln439Ter	p.Q439*	ENST00000366560	NM_000143.3	439	Cag/Tag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715739	30715739	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0030846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	34	372	0	ENST00000359013.4:c.1471+1G>T		p.X491_splice	ENST00000359013	NM_001024847.2	491																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	87	445	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045518	47045518	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	145	644	0	ENST00000329236.7:c.2251G>T	p.Glu751Ter	p.E751*	ENST00000329236	NM_001204466.1	751	Gag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108192026	108192026	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	68	325	0	ENST00000278616.4:c.6453-2A>G		p.X2151_splice	ENST00000278616	NM_000051.3	2151																																																																															
MSI1	4440	MSKCC	GRCh37	12	120795651	120795651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	53	476	1	ENST00000257552.2:c.502G>A	p.Glu168Lys	p.E168K	ENST00000257552	NM_002442.3	168	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913464	32913464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	62	544	0	ENST00000380152.3:c.4972C>G	p.Gln1658Glu	p.Q1658E	ENST00000380152		1658	Cag/Gag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5256120	5256120	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	103	457	1	ENST00000357368.4:c.717A>T	p.Glu239Asp	p.E239D	ENST00000357368	NM_002850.3	239	gaA/gaT																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137524823	137524823	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	76	333	1	ENST00000367739.4:c.547-1G>T		p.X183_splice	ENST00000367739	NM_000416.2	183																																																																															
BTK	695	MSKCC	GRCh37	X	100630227	100630227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	77	437	0	ENST00000308731.7:c.46C>A	p.Gln16Lys	p.Q16K	ENST00000308731	NM_000061.2	16	Cag/Aag																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719535	190719535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	122	371	0	ENST00000441310.2:c.1537G>C	p.Glu513Gln	p.E513Q	ENST00000441310	NM_000534.4	513	Gaa/Caa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629815	187629816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	123	618	0	ENST00000441802.2:c.1166dup	p.Ala391GlyfsTer13	p.A391Gfs*13	ENST00000441802	NM_005245.3	389	gta/gtTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1258720	1258720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	191	463	0	ENST00000310581.5:c.3025G>C	p.Ala1009Pro	p.A1009P	ENST00000310581	NM_198253.2	1009	Gcg/Ccg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5123065	5123065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	167	454	0	ENST00000381652.3:c.3121G>A	p.Gly1041Arg	p.G1041R	ENST00000381652	NM_004972.3	1041	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	385	610	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519508	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0030877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	361	419	0	ENST00000367739.4:c.1130_1133del	p.Glu377ValfsTer5	p.E377Vfs*5	ENST00000367739	NM_000416.2	377	gAGAGt/gt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189855	66189855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	261	475	0	ENST00000273854.3:c.3091G>T	p.Val1031Leu	p.V1031L	ENST00000273854	NM_004439.5	1031	Gta/Tta																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446343	49446354	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCACCTAGTGGT	TCACCTAGTGGT	-			P-0030877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	294	577	0	ENST00000301067.7:c.1251_1258+4del		p.X417_splice	ENST00000301067	NM_003482.3	417																																																																															
MGA	23269	MSKCC	GRCh37	15	41988524	41988549	+	frameshift_variant	Frame_Shift_Del	DEL	ACCATCTATCTTCTAAATGGCTTCCA	ACCATCTATCTTCTAAATGGCTTCCA	-			P-0030877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	332	601	0	ENST00000219905.7:c.1317_1342del	p.Asp439GlufsTer8	p.D439Efs*8	ENST00000219905	NM_001164273.1	439	gACCATCTATCTTCTAAATGGCTTCCA/g																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472547	88472547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	291	599	0	ENST00000360948.2:c.2008C>G	p.Leu670Val	p.L670V	ENST00000360948	NM_001012338.2	670	Ctg/Gtg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40870050	40870050	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	325	512	0	ENST00000428826.2:c.967A>T	p.Asn323Tyr	p.N323Y	ENST00000428826		323	Aat/Tat																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5207939	5207939	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	160	562	0	ENST00000357368.4:c.5772G>C	p.Gln1924His	p.Q1924H	ENST00000357368	NM_002850.3	1924	caG/caC																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247195	153247195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	273	415	0	ENST00000281708.4:c.1607C>A	p.Thr536Lys	p.T536K	ENST00000281708	NM_033632.3	536	aCg/aAg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046317	180046317	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	225	453	0	ENST00000261937.6:c.2697C>G	p.Ile899Met	p.I899M	ENST00000261937	NM_182925.4	899	atC/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	48	521	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441252	52441252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	369	513	0	ENST00000460680.1:c.518A>G	p.Tyr173Cys	p.Y173C	ENST00000460680	NM_004656.3	173	tAt/tGt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	206	638	0	ENST00000347630.2:c.398T>G	p.Phe133Cys	p.F133C	ENST00000347630	NM_001007230.1	133	tTc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	213	725	0	ENST00000269305.4:c.470T>C	p.Val157Ala	p.V157A	ENST00000269305	NM_001126112.2	157	gTc/gCc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250825	10250825	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	194	656	0	ENST00000340748.4:c.3655A>T	p.Met1219Leu	p.M1219L	ENST00000340748		1219	Atg/Ttg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11135012	11135012	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	171	608	0	ENST00000344626.4:c.2979G>C	p.Glu993Asp	p.E993D	ENST00000344626	NM_003072.3	993	gaG/gaC																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25973236	25973236	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	104	439	0	ENST00000435504.4:c.1189A>C	p.Ser397Arg	p.S397R	ENST00000435504		397	Agt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	297	369	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0030952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	454	771	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0030952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	164	463	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
RAF1	5894	MSKCC	GRCh37	3	12632306	12632306	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	136	465	0	ENST00000251849.4:c.1361A>C	p.Gln454Pro	p.Q454P	ENST00000251849	NM_002880.3	454	cAg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	56	400	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0030975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	44	358	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434440	110434440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	42	348	0	ENST00000375856.3:c.3961G>A	p.Ala1321Thr	p.A1321T	ENST00000375856	NM_003749.2	1321	Gcc/Acc																																																																														
TP63	8626	MSKCC	GRCh37	3	189586464	189586464	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	36	374	0	ENST00000264731.3:c.1088A>T	p.Gln363Leu	p.Q363L	ENST00000264731	NM_003722.4	363	cAa/cTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012309	152012309	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	28	319	0	ENST00000262189.6:c.504del	p.Asn169ThrfsTer37	p.N169Tfs*37	ENST00000262189	NM_170606.2	168	tcT/tc																																																																														
CDH1	999	MSKCC	GRCh37	16	68863680	68863691	+	inframe_deletion	In_Frame_Del	DEL	ATTGGAAATTTT	ATTGGAAATTTT	-			P-0031008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	107	511	0	ENST00000261769.5:c.2423_2434del	p.Gly808_Ile811del	p.G808_I811del	ENST00000261769	NM_004360.3	807	ATTGGAAATTTT/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	232	503	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	487	782	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
MED12	9968	MSKCC	GRCh37	X	70339981	70339981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	99	302	0	ENST00000374080.3:c.514G>A	p.Glu172Lys	p.E172K	ENST00000374080		172	Gag/Aag																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	115	456	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571841	64571841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1207	125	888	1	ENST00000337652.1:c.1813C>G	p.Leu605Val	p.L605V	ENST00000337652	NM_130803.2	605	Ctg/Gtg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5044449	5044449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	76	618	0	ENST00000381652.3:c.397C>T	p.Arg133Trp	p.R133W	ENST00000381652	NM_004972.3	133	Cgg/Tgg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786770	3786770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	79	574	0	ENST00000262367.5:c.4441G>A	p.Asp1481Asn	p.D1481N	ENST00000262367	NM_004380.2	1481	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112176877	112176877	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	57	480	0	ENST00000257430.4:c.5586G>C	p.Leu1862Phe	p.L1862F	ENST00000257430	NM_000038.5	1862	ttG/ttC																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003189	143003189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	153	407	0	ENST00000262992.4:c.2637G>A	p.Met879Ile	p.M879I	ENST00000262992	NM_001101669.1	879	atG/atA																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710657	114710657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	95	544	0	ENST00000543371.1:c.142C>G	p.Leu48Val	p.L48V	ENST00000543371	NM_001198531.1	48	Cta/Gta																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373698	118373698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	75	475	0	ENST00000534358.1:c.7091C>A	p.Ser2364Tyr	p.S2364Y	ENST00000534358	NM_005933.3	2364	tCt/tAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041458	42041458	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	71	530	0	ENST00000219905.7:c.5653T>A	p.Ser1885Thr	p.S1885T	ENST00000219905	NM_001164273.1	1885	Tca/Aca																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129653	11129655	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	ACG	ACG	-			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	99	744	1	ENST00000344626.4:c.2460_2462del	p.Tyr820_Glu821delinsTer	p.Y820_E821delins*	ENST00000344626	NM_003072.3	820	tACGag/tag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265477	198265477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	407	613	0	ENST00000335508.6:c.2680G>C	p.Asp894His	p.D894H	ENST00000335508	NM_012433.2	894	Gat/Cat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103729	47103729	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	75	542	0	ENST00000409792.3:c.6217G>C	p.Glu2073Gln	p.E2073Q	ENST00000409792	NM_014159.6	2073	Gag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	266	566	0				ENST00000310581	NM_198253.2																																																																																
MDC1	9656	MSKCC	GRCh37	6	30671781	30671781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	67	634	0	ENST00000376406.3:c.5179G>A	p.Ala1727Thr	p.A1727T	ENST00000376406	NM_014641.2	1727	Gct/Act																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671918	30671918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	79	776	0	ENST00000376406.3:c.5042G>A	p.Ser1681Asn	p.S1681N	ENST00000376406	NM_014641.2	1681	aGc/aAc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004440	150004440	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	63	500	0	ENST00000253339.5:c.1785G>C	p.Lys595Asn	p.K595N	ENST00000253339		595	aaG/aaC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859445	151859445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	61	472	0	ENST00000262189.6:c.11217G>T	p.Gln3739His	p.Q3739H	ENST00000262189	NM_170606.2	3739	caG/caT																																																																														
NF1	4763	MSKCC	GRCh37	17	29654856	29654856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	57	201	0	ENST00000358273.4:c.5608C>T	p.Arg1870Trp	p.R1870W	ENST00000358273	NM_001042492.2	1870	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0031031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	101	449	1	ENST00000275493.2:c.2239_2240delTTinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa																																																																														
AR	367	MSKCC	GRCh37	X	66766406	66766406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	78	196	0	ENST00000374690.3:c.1418G>A	p.Gly473Asp	p.G473D	ENST00000374690	NM_000044.3	473	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	232	531	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631392	117631392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	94	351	2	ENST00000368508.3:c.6286C>T	p.Arg2096Trp	p.R2096W	ENST00000368508	NM_002944.2	2096	Cgg/Tgg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522619	106522619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	24	416	0	ENST00000359195.3:c.2596C>T	p.Pro866Ser	p.P866S	ENST00000359195	NM_002649.2	866	Cca/Tca																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	50	456	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692919	89692919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	55	521	0	ENST00000371953.3:c.403A>G	p.Ile135Val	p.I135V	ENST00000371953	NM_000314.4	135	Ata/Gta																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244999	123244999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150015885		P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	87	504	0	ENST00000358487.5:c.2105C>T	p.Ser702Leu	p.S702L	ENST00000358487	NM_000141.4	702	tCg/tTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	18	266	0	ENST00000371953.3:c.176C>A	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tAa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	39	386	0	ENST00000379607.5:c.38G>A	p.Arg13His	p.R13H	ENST00000379607	NM_001412.3	13	cGc/cAc																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288098	21288098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	28	344	0	ENST00000354336.3:c.343G>A	p.Ala115Thr	p.A115T	ENST00000354336	NM_005207.3	115	Gca/Aca																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525889	148525891	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	27	476	1	ENST00000320356.2:c.566_568del	p.Asp189del	p.D189del	ENST00000320356	NM_004456.4	189	gATGga/gga																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206647765	206647765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	73	516	0	ENST00000367120.3:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000367120	NM_014002.3	60	cGg/cAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916211	9916211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	47	464	0	ENST00000330684.3:c.2078A>G	p.Asn693Ser	p.N693S	ENST00000330684	NM_001134407.1	693	aAc/aGc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597355	10597355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	46	583	0	ENST00000171111.5:c.1848G>T	p.Gln616His	p.Q616H	ENST00000171111	NM_203500.1	616	caG/caT																																																																														
CARM1	10498	MSKCC	GRCh37	19	11032341	11032341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	84	620	2	ENST00000327064.4:c.1735G>A	p.Ala579Thr	p.A579T	ENST00000327064	NM_199141.1	579	Gca/Aca																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354151	15354152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	61	496	1	ENST00000263377.2:c.2728dup	p.Gln910ProfsTer7	p.Q910Pfs*7	ENST00000263377	NM_058243.2	910	caa/cCaa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55143564	55143565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	17	262	0	ENST00000257290.5:c.1800dup	p.Ser601ValfsTer9	p.S601Vfs*9	ENST00000257290	NM_006206.4	599	ttg/ttGg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589603	67589611	+	inframe_deletion	In_Frame_Del	DEL	TTTCAAGAA	TTTCAAGAA	-			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	33	326	0	ENST00000274335.5:c.1366_1374del	p.Phe456_Glu458del	p.F456_E458del	ENST00000274335		456	TTTCAAGAA/-																																																																														
MED12	9968	MSKCC	GRCh37	X	70339622	70339622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	74	538	1	ENST00000374080.3:c.291C>A	p.Asn97Lys	p.N97K	ENST00000374080		97	aaC/aaA																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152858113	152858113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	141	613	1	ENST00000406277.2:c.502G>A	p.Ala168Thr	p.A168T	ENST00000406277	NM_152274.4	168	Gcc/Acc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281800	46281800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	219	530	0	ENST00000371998.3:c.4247C>G	p.Pro1416Arg	p.P1416R	ENST00000371998		1416	cCt/cGt																																																																														
TCEB1	6921	MSKCC	GRCh37	8	74868197	74868197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	88	108	0	ENST00000284811.8:c.97A>G	p.Arg33Gly	p.R33G	ENST00000284811		33	Aga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	371	799	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	211	583	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	219	489	1	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14042095	14042095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	157	444	2	ENST00000311895.7:c.2642A>G	p.Gln881Arg	p.Q881R	ENST00000311895	NM_005236.2	881	cAa/cGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	263	727	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863296	57863296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	147	821	2	ENST00000228682.2:c.1391G>T	p.Gly464Val	p.G464V	ENST00000228682	NM_005269.2	464	gGt/gTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1207059	1207059	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	148	926	0	ENST00000326873.7:c.148del	p.Leu50Ter	p.L50*	ENST00000326873	NM_000455.4	49	taC/ta																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45799273	45799273	+	intron_variant	Intron	SNP	A	A	C			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	70	462	0	ENST00000372115.3:c.158-40T>G		p.*53*	ENST00000372115	NM_001048171.1																																																																																
ANKRD11	29123	MSKCC	GRCh37	16	89347410	89347410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	112	961	0	ENST00000301030.4:c.5540C>G	p.Ser1847Trp	p.S1847W	ENST00000301030	NM_001256183.1	1847	tCg/tGg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805562	46805562	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	164	1006	0	ENST00000290295.7:c.394G>T	p.Gly132Ter	p.G132*	ENST00000290295	NM_006361.5	132	Gga/Tga																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602891	10602891	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	195	1059	1	ENST00000171111.5:c.687del	p.Thr230ProfsTer8	p.T230Pfs*8	ENST00000171111	NM_203500.1	229	gtG/gt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910253	50910253	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	131	805	1	ENST00000440232.2:c.1508A>T	p.Gln503Leu	p.Q503L	ENST00000440232	NM_002691.3	503	cAg/cTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52595803	52595804	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTGTCTCAAGATTTCTCCATT			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	37	653	0	ENST00000394830.3:c.4091_4111dup	p.Glu1364_Thr1370dup	p.E1364_T1370dup	ENST00000394830	NM_018313.4	1364	gcc/gAATGGAGAAATCTTGAGACAGcc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851784	134851784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	135	795	0	ENST00000398015.3:c.1190G>T	p.Trp397Leu	p.W397L	ENST00000398015	NM_004441.4	397	tGg/tTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76940480	76940480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	106	781	1	ENST00000373344.5:c.613A>G	p.Met205Val	p.M205V	ENST00000373344	NM_000489.3	205	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	143	818	0	ENST00000269305.4:c.394A>C	p.Lys132Gln	p.K132Q	ENST00000269305	NM_001126112.2	132	Aag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	189	415	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	398	613	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	321	315	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	99	211	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	489	721	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789661	3789661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	277	565	0	ENST00000262367.5:c.4198G>C	p.Glu1400Gln	p.E1400Q	ENST00000262367	NM_004380.2	1400	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578227	7578227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	152	746	1	ENST00000269305.4:c.622G>A	p.Asp208Asn	p.D208N	ENST00000269305	NM_001126112.2	208	Gac/Aac																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217909	2217909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	266	709	0	ENST00000398665.3:c.2683G>A	p.Glu895Lys	p.E895K	ENST00000398665	NM_032482.2	895	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087395	27087396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	400	677	0	ENST00000324856.7:c.1970dup	p.Ser658GlufsTer18	p.S658Efs*18	ENST00000324856	NM_006015.4	657	ctg/cTtg																																																																														
TET1	80312	MSKCC	GRCh37	10	70405200	70405200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	222	587	0	ENST00000373644.4:c.2714C>T	p.Ser905Leu	p.S905L	ENST00000373644	NM_030625.2	905	tCa/tTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099479	27099479	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	272	398	0	ENST00000324856.7:c.3715+1G>C		p.X1239_splice	ENST00000324856	NM_006015.4	1239																																																																															
MGA	23269	MSKCC	GRCh37	15	41991077	41991077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	285	480	0	ENST00000219905.7:c.2030A>T	p.His677Leu	p.H677L	ENST00000219905	NM_001164273.1	677	cAt/cTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786066	3786066	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	145	700	0	ENST00000262367.5:c.4699G>C	p.Glu1567Gln	p.E1567Q	ENST00000262367	NM_004380.2	1567	Gag/Cag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882311	89882311	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	255	575	0	ENST00000389301.3:c.163C>T	p.Gln55Ter	p.Q55*	ENST00000389301	NM_000135.2	55	Cag/Tag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534462	63534462	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	128	678	0	ENST00000307078.5:c.1060-1G>C		p.X354_splice	ENST00000307078	NM_004655.3	354																																																																															
CALR	811	MSKCC	GRCh37	19	13054393	13054393	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	247	618	0	ENST00000316448.5:c.1003G>C	p.Asp335His	p.D335H	ENST00000316448	NM_004343.3	335	Gat/Cat																																																																														
ERG	2078	MSKCC	GRCh37	21	39755631	39755631	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	221	625	0	ENST00000288319.7:c.1134G>C	p.Met378Ile	p.M378I	ENST00000288319	NM_182918.3	378	atG/atC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295173	1295173	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	201	203	0				ENST00000310581	NM_198253.2																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67590466	67590466	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	85	319	0	ENST00000274335.5:c.1528G>C	p.Glu510Gln	p.E510Q	ENST00000274335		510	Gaa/Caa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180041089	180041089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	467	952	0	ENST00000261937.6:c.3310C>G	p.Leu1104Val	p.L1104V	ENST00000261937	NM_182925.4	1104	Ctc/Gtc																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020724	26020724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	421	254	0	ENST00000357647.3:c.7C>A	p.Arg3Ser	p.R3S	ENST00000357647	NM_003529.2	3	Cgc/Agc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054861	5054861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	338	486	0	ENST00000381652.3:c.913G>A	p.Glu305Lys	p.E305K	ENST00000381652	NM_004972.3	305	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	44	452	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MAX	4149	MSKCC	GRCh37	14	65544661	65544661	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	81	595	0	ENST00000358664.4:c.265A>T	p.Lys89Ter	p.K89*	ENST00000358664	NM_002382.4	89	Aag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391103	89391103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	35	639	1	ENST00000336596.2:c.1169C>A	p.Thr390Asn	p.T390N	ENST00000336596	NM_005233.5	390	aCc/aAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70350037	70350037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	51	484	0	ENST00000374080.3:c.4020G>C	p.Gln1340His	p.Q1340H	ENST00000374080		1340	caG/caC																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	319	575	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	237	400	1	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	307	562	0	ENST00000269305.4:c.989T>A	p.Leu330His	p.L330H	ENST00000269305	NM_001126112.2	330	cTt/cAt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468324	120468324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	287	532	0	ENST00000256646.2:c.4115G>T	p.Arg1372Leu	p.R1372L	ENST00000256646	NM_024408.3	1372	cGg/cTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865436	57865436	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	604	805	0	ENST00000228682.2:c.2913T>A	p.His971Gln	p.H971Q	ENST00000228682	NM_005269.2	971	caT/caA																																																																														
DIS3	22894	MSKCC	GRCh37	13	73348118	73348118	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	235	502	0	ENST00000377767.4:c.1067A>G	p.Tyr356Cys	p.Y356C	ENST00000377767	NM_014953.3	356	tAt/tGt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476287	88476287	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	302	663	1	ENST00000360948.2:c.1845G>T	p.Met615Ile	p.M615I	ENST00000360948	NM_001012338.2	615	atG/atT																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46609582	46609582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	346	719	1	ENST00000263734.3:c.2306C>T	p.Pro769Leu	p.P769L	ENST00000263734	NM_001430.4	769	cCc/cTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980778	40980778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	232	560	0	ENST00000373198.4:c.1708A>T	p.Thr570Ser	p.T570S	ENST00000373198	NM_133170.3	570	Aca/Tca																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46266419	46266419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	218	441	0	ENST00000371998.3:c.2404G>T	p.Ala802Ser	p.A802S	ENST00000371998		802	Gct/Tct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32183108	32183108	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	821	900	0	ENST00000375023.3:c.1916T>C	p.Ile639Thr	p.I639T	ENST00000375023	NM_004557.3	639	aTa/aCa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066662	94066662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	222	467	0	ENST00000369303.4:c.1097G>T	p.Arg366Ile	p.R366I	ENST00000369303	NM_004440.3	366	aGa/aTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341138	8341138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	223	511	0	ENST00000356435.5:c.5078G>T	p.Gly1693Val	p.G1693V	ENST00000356435		1693	gGa/gTa																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123499669	123499669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	233	266	0	ENST00000371139.4:c.196G>T	p.Ala66Ser	p.A66S	ENST00000371139	NM_001114937.2	66	Gct/Tct																																																																														
TSHR	7253	MSKCC	GRCh37	14	81562997	81562997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	187	375	0	ENST00000298171.2:c.560A>G	p.Asn187Ser	p.N187S	ENST00000298171	NM_000369.2	187	aAt/aGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	49	233	1				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	102	656	0	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65323437	65323437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	65	481	0	ENST00000342505.4:c.1360C>T	p.Arg454Trp	p.R454W	ENST00000342505	NM_002227.2	454	Cgg/Tgg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	62	433	3	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0031320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	59	426	0	ENST00000371953.3:c.635-1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602878	10602878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	135	775	1	ENST00000171111.5:c.700C>T	p.Arg234Trp	p.R234W	ENST00000171111	NM_203500.1	234	Cgg/Tgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602863	10602863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	127	792	0	ENST00000171111.5:c.715G>T	p.Val239Leu	p.V239L	ENST00000171111	NM_203500.1	239	Gtg/Ttg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979556	7979556	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	108	688	0	ENST00000319144.4:c.1469T>C	p.Val490Ala	p.V490A	ENST00000319144	NM_001139.2	490	gTc/gCc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125737	47125737	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	91	390	0	ENST00000409792.3:c.5533A>T	p.Ser1845Cys	p.S1845C	ENST00000409792	NM_014159.6	1845	Agt/Tgt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405915	157405915	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	89	509	0	ENST00000346085.5:c.2159del	p.Phe720SerfsTer25	p.F720Sfs*25	ENST00000346085	NM_020732.3	719	ccT/cc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929293	44929324	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAAGTCAATAACATCCACCCAGCTGTTCAT	ACAAAGTCAATAACATCCACCCAGCTGTTCAT	-			P-0031320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	81	758	0	ENST00000377967.4:c.2399_2430del	p.Val800AspfsTer2	p.V800Dfs*2	ENST00000377967	NM_021140.2	798	gACAAAGTCAATAACATCCACCCAGCTGTTCAT/g																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031684-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			576	402	563	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031684-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			749	413	548	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031684-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			351	351	662	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031684-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			843	516	626	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29585453	29585463	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAAGCAGGG	ATGAAGCAGGG	-			P-0031684-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			312	233	511	0	ENST00000358273.4:c.4267_4277del	p.Glu1423PhefsTer3	p.E1423Ffs*3	ENST00000358273	NM_001042492.2	1422	tATGAAGCAGGG/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	369	673	2	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
RHOA	387	MSKCC	GRCh37	3	49400009	49400009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	185	678	1	ENST00000418115.1:c.328G>A	p.Val110Met	p.V110M	ENST00000418115	NM_001664.2	110	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427491	49427491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	492	684	1	ENST00000301067.7:c.10997G>C	p.Gly3666Ala	p.G3666A	ENST00000301067	NM_003482.3	3666	gGa/gCa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974745	21974789	+	inframe_deletion	In_Frame_Del	DEL	CCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAG	CCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAG	-			P-0031824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	119	298	0	ENST00000304494.5:c.38_82del	p.Ala13_Glu27del	p.A13_E27del	ENST00000304494	NM_000077.4	13	gCTGACTGGCTGGCCACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGtg/gtg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974745	21974789	+	inframe_deletion	In_Frame_Del	DEL	CCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAG	CCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAG	-			P-0031824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	119	298	0	ENST00000304494.5:c.38_82del	p.Ala13_Glu27del	p.A13_E27del	ENST00000304494	NM_000077.4	13	gCTGACTGGCTGGCCACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGtg/gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	497	696	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032205	26032205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	26	287	0	ENST00000244661.2:c.84G>C	p.Lys28Asn	p.K28N	ENST00000244661	NM_003537.3	28	aaG/aaC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433686	49433686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1644	128	896	2	ENST00000301067.7:c.7867G>A	p.Gly2623Arg	p.G2623R	ENST00000301067	NM_003482.3	2623	Gga/Aga																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475123	40475124	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCGCT			P-0031946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	54	603	0	ENST00000264657.5:c.1781_1786dup	p.Glu594_Arg595dup	p.E594_R595dup	ENST00000264657	NM_139276.2	594	gcc/gAGCGGGcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295314	1295314	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0031946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	52	476	0				ENST00000310581	NM_198253.2																																																																																
FLT4	2324	MSKCC	GRCh37	5	180047690	180047690	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	87	675	0	ENST00000261937.6:c.2325G>C	p.Glu775Asp	p.E775D	ENST00000261937	NM_182925.4	775	gaG/gaC																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030540	47030547	+	intron_variant	Intron	DEL	GGACTATC	GGACTATC	-			P-0031946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	54	495	0	ENST00000329236.7:c.201+1647_201+1654del		p.*67*	ENST00000329236	NM_001204466.1																																																																																
MED12	9968	MSKCC	GRCh37	X	70362044	70362044	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1272	119	671	1	ENST00000374080.3:c.6510T>A	p.Ser2170Arg	p.S2170R	ENST00000374080		2170	agT/agA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	154	230	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	818	586	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
AXL	558	MSKCC	GRCh37	19	41726561	41726561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	236	537	0	ENST00000301178.4:c.106C>T	p.Pro36Ser	p.P36S	ENST00000301178	NM_021913.4	36	Ccc/Tcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	194	322	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	194	322	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716344	18716344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	212	300	0	ENST00000266497.5:c.3691G>A	p.Glu1231Lys	p.E1231K	ENST00000266497		1231	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70352349	70352349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	312	453	0	ENST00000374080.3:c.4376C>T	p.Ser1459Phe	p.S1459F	ENST00000374080		1459	tCc/tTc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005269	150005269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	235	494	0	ENST00000253339.5:c.956G>A	p.Gly319Asp	p.G319D	ENST00000253339		319	gGc/gAc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455063	50455063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	155	280	0	ENST00000331340.3:c.610G>A	p.Gly204Arg	p.G204R	ENST00000331340	NM_006060.4	204	Gga/Aga																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923394	36923394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	397	657	0	ENST00000358127.4:c.868G>A	p.Gly290Arg	p.G290R	ENST00000358127	NM_001280556.1	290	Ggg/Agg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	194	322	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285228	212285228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	221	396	0	ENST00000342788.4:c.3073C>T	p.Pro1025Ser	p.P1025S	ENST00000342788	NM_005235.2	1025	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757438	40757438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	355	598	0	ENST00000373198.4:c.2860G>A	p.Asp954Asn	p.D954N	ENST00000373198	NM_133170.3	954	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	125	171	0				ENST00000310581	NM_198253.2																																																																																
LATS1	9113	MSKCC	GRCh37	6	150001305	150001305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	231	426	0	ENST00000253339.5:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000253339		767	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992838	72992838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	277	587	0	ENST00000268489.5:c.1207C>T	p.Leu403Phe	p.L403F	ENST00000268489	NM_006885.3	403	Ctt/Ttt																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733605	85733605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	214	425	0	ENST00000370580.1:c.407C>T	p.Ser136Leu	p.S136L	ENST00000370580	NM_003921.4	136	tCa/tTa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121437328	121437328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	401	802	0	ENST00000257555.6:c.1666C>T	p.His556Tyr	p.H556Y	ENST00000257555		556	Cac/Tac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589754	28589754	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	204	401	0	ENST00000241453.7:c.2626A>T	p.Ile876Leu	p.I876L	ENST00000241453	NM_004119.2	876	Ata/Tta																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623652	28623652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	245	410	0	ENST00000241453.7:c.905C>T	p.Thr302Ile	p.T302I	ENST00000241453	NM_004119.2	302	aCc/aTc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2213939	2213939	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	333	621	0	ENST00000326181.6:c.18T>G	p.Ser6Arg	p.S6R	ENST00000326181	NM_032271.2	6	agT/agG																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108214	8108214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	328	504	0	ENST00000585124.1:c.1010C>T	p.Pro337Leu	p.P337L	ENST00000585124	NM_004217.3	337	cCc/cTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40899037	40899037	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	251	493	1	ENST00000373198.4:c.2233G>A	p.Gly745Ser	p.G745S	ENST00000373198	NM_133170.3	745	Ggt/Agt																																																																														
TP63	8626	MSKCC	GRCh37	3	189526215	189526215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	370	596	0	ENST00000264731.3:c.479C>T	p.Ser160Phe	p.S160F	ENST00000264731	NM_003722.4	160	tCt/tTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55968587	55968588	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	317	532	1	ENST00000263923.4:c.2075_2076delinsAA	p.Gly692Glu	p.G692E	ENST00000263923	NM_002253.2	692	gGG/gAA																																																																														
TET2	54790	MSKCC	GRCh37	4	106156904	106156904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	173	354	0	ENST00000380013.4:c.1805C>T	p.Ser602Phe	p.S602F	ENST00000380013	NM_001127208.2	602	tCc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250900	153250901	+	missense_variant	Missense_Mutation	DNP	AA	AA	GG			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	137	183	0	ENST00000281708.4:c.1159_1160delinsCC	p.Leu387Pro	p.L387P	ENST00000281708	NM_033632.3	387	TTa/CCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1282664	1282664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	373	606	0	ENST00000310581.5:c.1649G>A	p.Ser550Asn	p.S550N	ENST00000310581	NM_198253.2	550	aGt/aAt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673407	30673407	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	436	718	0	ENST00000376406.3:c.3553C>T	p.Gln1185Ter	p.Q1185*	ENST00000376406	NM_014641.2	1185	Cag/Tag																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287155	33287155	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	268	527	0	ENST00000374542.5:c.1940+2T>G		p.X647_splice	ENST00000374542	NM_001141970.1	647																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553407	106553407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	190	339	0	ENST00000369096.4:c.1372C>T	p.His458Tyr	p.H458Y	ENST00000369096	NM_001198.3	458	Cac/Tac																																																																														
KDR	3791	MSKCC	GRCh37	4	55968588	55968588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	316	532	1	ENST00000263923.4:c.2075G>A	p.Gly692Glu	p.G692E	ENST00000263923	NM_002253.2	692	gGg/gAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250900	153250900	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	137	182	0	ENST00000281708.4:c.1160T>C	p.Leu387Ser	p.L387S	ENST00000281708	NM_033632.3	387	tTa/tCa																																																																														
NBN	4683	MSKCC	GRCh37	8	90993645	90993645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs12721593		P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	54	372	0	ENST00000265433.3:c.278C>T	p.Ser93Leu	p.S93L	ENST00000265433	NM_002485.4	93	tCg/tTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189584569	189584569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	79	371	1	ENST00000264731.3:c.865C>T	p.Pro289Ser	p.P289S	ENST00000264731	NM_003722.4	289	Cct/Tct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	76	524	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	51	479	2	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	164	531	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
AR	367	MSKCC	GRCh37	X	66942700	66942700	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200801099		P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	86	509	0	ENST00000374690.3:c.2481C>A	p.Phe827Leu	p.F827L	ENST00000374690	NM_000044.3	827	ttC/ttA																																																																														
APC	324	MSKCC	GRCh37	5	112179480	112179480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	86	452	0	ENST00000257430.4:c.8189C>T	p.Ala2730Val	p.A2730V	ENST00000257430	NM_000038.5	2730	gCc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	81	648	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70342433	70342433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	192	652	1	ENST00000374080.3:c.1324G>A	p.Asp442Asn	p.D442N	ENST00000374080		442	Gat/Aat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153259071	153259071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	51	292	0	ENST00000281708.4:c.744G>T	p.Glu248Asp	p.E248D	ENST00000281708	NM_033632.3	248	gaG/gaT																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740215	162740215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	155	488	1	ENST00000367921.3:c.1417C>T	p.Arg473Cys	p.R473C	ENST00000367921	NM_006182.2	473	Cgc/Tgc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485442	57485442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	119	391	0	ENST00000371085.3:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000371085	NM_000516.4	342	Cga/Tga																																																																														
AR	367	MSKCC	GRCh37	X	66905909	66905909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	69	564	0	ENST00000374690.3:c.1826G>T	p.Arg609Met	p.R609M	ENST00000374690	NM_000044.3	609	aGg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	47	415	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944326	81944326	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	116	398	0	ENST00000359376.3:c.1934+1G>A		p.X645_splice	ENST00000359376	NM_002661.3	645																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677876	47677876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	109	395	0	ENST00000347630.2:c.989C>T	p.Ser330Leu	p.S330L	ENST00000347630	NM_001007230.1	330	tCg/tTg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131418	17131418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	162	591	1	ENST00000285071.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000285071	NM_144997.5	12	Gag/Aag																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029218	14029218	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41557814		P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	54	288	0	ENST00000311895.7:c.1429C>T	p.Arg477Trp	p.R477W	ENST00000311895	NM_005236.2	477	Cgg/Tgg																																																																														
KDR	3791	MSKCC	GRCh37	4	55953890	55953890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	78	462	0	ENST00000263923.4:c.3546G>T	p.Glu1182Asp	p.E1182D	ENST00000263923	NM_002253.2	1182	gaG/gaT																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645121	86645121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	51	375	1	ENST00000274376.6:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000274376	NM_002890.2	398	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108098533	108098533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	51	379	0	ENST00000278616.4:c.103C>T	p.Arg35Ter	p.R35*	ENST00000278616	NM_000051.3	35	Cga/Tga																																																																														
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	91	525	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																														
AR	367	MSKCC	GRCh37	X	66766441	66766441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	67	267	1	ENST00000374690.3:c.1453C>T	p.Arg485Trp	p.R485W	ENST00000374690	NM_000044.3	485	Cgg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702537	52702538	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	30	484	0	ENST00000394830.3:c.360dup	p.Asn121Ter	p.N121*	ENST00000394830	NM_018313.4	120	-/T																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844404	156844404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	201	767	1	ENST00000524377.1:c.1237G>A	p.Glu413Lys	p.E413K	ENST00000524377	NM_002529.3	413	Gaa/Aaa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467875	99467875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	135	411	0	ENST00000268035.6:c.2744C>T	p.Ser915Leu	p.S915L	ENST00000268035	NM_000875.3	915	tCg/tTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2978320	2978320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	168	566	0	ENST00000396946.4:c.1010G>A	p.Arg337Gln	p.R337Q	ENST00000396946	NM_032415.4	337	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033753	48033753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	30	365	0	ENST00000234420.5:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000234420	NM_000179.2	1322	Gaa/Taa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6027082	6027082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	63	232	0	ENST00000265849.7:c.1314G>T	p.Lys438Asn	p.K438N	ENST00000265849	NM_000535.5	438	aaG/aaT																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412494	80412494	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	139	456	0	ENST00000286548.4:c.547C>T	p.Arg183Ter	p.R183*	ENST00000286548	NM_002072.3	183	Cga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231757	66231757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	62	487	0	ENST00000273854.3:c.1943G>T	p.Arg648Ile	p.R648I	ENST00000273854	NM_004439.5	648	aGa/aTa																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119666150	119666150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	16	431	0	ENST00000316626.5:c.331C>T	p.Arg111Ter	p.R111*	ENST00000316626		111	Cga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021206	31021206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	146	577	0	ENST00000375687.4:c.1205G>A	p.Arg402Gln	p.R402Q	ENST00000375687	NM_015338.5	402	cGa/cAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265323	152265323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	79	335	0	ENST00000206249.3:c.776G>A	p.Arg259Gln	p.R259Q	ENST00000206249	NM_000125.3	259	cGa/cAa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099271	4099271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	164	552	3	ENST00000262948.5:c.847G>A	p.Val283Met	p.V283M	ENST00000262948	NM_030662.3	283	Gtg/Atg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	42	175	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251860	212251860	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	87	314	0	ENST00000342788.4:c.3199C>T	p.Arg1067Ter	p.R1067*	ENST00000342788	NM_005235.2	1067	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943753	9943753	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	73	541	0	ENST00000330684.3:c.1188C>A	p.Phe396Leu	p.F396L	ENST00000330684	NM_001134407.1	396	ttC/ttA																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070325	37070325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	95	434	0	ENST00000231790.2:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000231790	NM_000249.3	487	cGa/cAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106193889	106193889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	104	357	0	ENST00000380013.4:c.4351C>T	p.Arg1451Trp	p.R1451W	ENST00000380013	NM_001127208.2	1451	Cgg/Tgg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285871	87285871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	130	433	0	ENST00000277120.3:c.208G>A	p.Glu70Lys	p.E70K	ENST00000277120		70	Gaa/Aaa																																																																														
CASP8	841	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	117	490	0	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa																																																																														
BRAF	673	MSKCC	GRCh37	7	140494188	140494188	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	136	751	1	ENST00000288602.6:c.1060C>T	p.Arg354Ter	p.R354*	ENST00000288602	NM_004333.4	354	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023197	27023197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	25	79	0	ENST00000324856.7:c.303G>T	p.Lys101Asn	p.K101N	ENST00000324856	NM_006015.4	101	aaG/aaT																																																																														
FH	2271	MSKCC	GRCh37	1	241667422	241667422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	97	477	0	ENST00000366560.3:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000366560	NM_000143.3	343	cGa/cAa																																																																														
AXL	558	MSKCC	GRCh37	19	41763488	41763488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	46	495	1	ENST00000301178.4:c.2287C>T	p.Arg763Cys	p.R763C	ENST00000301178	NM_021913.4	763	Cgc/Tgc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99149872	99149872	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	143	447	0	ENST00000074304.5:c.184C>T	p.Arg62Ter	p.R62*	ENST00000074304	NM_001134224.1	62	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961036	15961036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	88	428	0	ENST00000268712.3:c.6184G>T	p.Asp2062Tyr	p.D2062Y	ENST00000268712	NM_006311.3	2062	Gat/Tat																																																																														
EZH2	2146	MSKCC	GRCh37	7	148543620	148543620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	110	569	0	ENST00000320356.2:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000320356	NM_004456.4	63	cGa/cAa																																																																														
AR	367	MSKCC	GRCh37	X	66905935	66905935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	66	565	1	ENST00000374690.3:c.1852C>T	p.Arg618Trp	p.R618W	ENST00000374690	NM_000044.3	618	Cgg/Tgg																																																																														
CBL	867	MSKCC	GRCh37	11	119144724	119144724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	63	427	0	ENST00000264033.4:c.737G>A	p.Arg246Gln	p.R246Q	ENST00000264033	NM_005188.3	246	cGa/cAa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247523	71247523	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	90	393	0	ENST00000318789.4:c.10G>T	p.Glu4Ter	p.E4*	ENST00000318789	NM_032682.5	4	Gaa/Taa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161374	55161374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	146	480	0	ENST00000257290.5:c.3205G>T	p.Asp1069Tyr	p.D1069Y	ENST00000257290	NM_006206.4	1069	Gac/Tac																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715319	61715319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	77	644	1	ENST00000401558.2:c.2294G>A	p.Arg765Gln	p.R765Q	ENST00000401558	NM_003400.3	765	cGa/cAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411948	63411948	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	155	813	0	ENST00000330258.3:c.1219G>T	p.Glu407Ter	p.E407*	ENST00000330258	NM_152424.3	407	Gaa/Taa																																																																														
MET	4233	MSKCC	GRCh37	7	116395570	116395570	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	64	491	0	ENST00000397752.3:c.1862+1G>A		p.X621_splice	ENST00000397752	NM_000245.2	621																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30108091	30108091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80271647		P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	80	647	0	ENST00000331968.5:c.716C>T	p.Ser239Leu	p.S239L	ENST00000331968	NM_002742.2	239	tCg/tTg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319887	62319887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	131	588	0	ENST00000508582.2:c.1801G>A	p.Asp601Asn	p.D601N	ENST00000508582		601	Gac/Aac																																																																														
HGF	3082	MSKCC	GRCh37	7	81358979	81358979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	68	607	1	ENST00000222390.5:c.982C>T	p.Arg328Cys	p.R328C	ENST00000222390	NM_000601.4	328	Cgt/Tgt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63829504	63829504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	80	482	0	ENST00000279873.7:c.1147G>A	p.Gly383Ser	p.G383S	ENST00000279873	NM_032199.2	383	Ggt/Agt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048737	180048737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	177	654	0	ENST00000261937.6:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000261937	NM_182925.4	609	Gac/Aac																																																																														
TET2	54790	MSKCC	GRCh37	4	106196207	106196208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	77	283	0	ENST00000380013.4:c.4544dup	p.Leu1515PhefsTer63	p.L1515Ffs*63	ENST00000380013	NM_001127208.2	1514	ctt/cTtt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073692	8073692	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	171	458	0	ENST00000377482.5:c.967G>T	p.Glu323Ter	p.E323*	ENST00000377482	NM_018948.3	323	Gaa/Taa																																																																														
FH	2271	MSKCC	GRCh37	1	241669404	241669404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	33	533	0	ENST00000366560.3:c.803G>T	p.Arg268Ile	p.R268I	ENST00000366560	NM_000143.3	268	aGa/aTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931826	68931826	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	93	618	0	ENST00000288368.4:c.256G>T	p.Glu86Ter	p.E86*	ENST00000288368	NM_024870.2	86	Gaa/Taa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115266570	115266570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	119	602	0	ENST00000438362.2:c.1945C>T	p.Arg649Cys	p.R649C	ENST00000438362	NM_001242891.1	649	Cgc/Tgc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332774	153332774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	153	640	0	ENST00000281708.4:c.182G>A	p.Gly61Glu	p.G61E	ENST00000281708	NM_033632.3	61	gGa/gAa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412470	80412470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28764015		P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	32	422	0	ENST00000286548.4:c.571G>A	p.Glu191Lys	p.E191K	ENST00000286548	NM_002072.3	191	Gaa/Aaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623783	28623783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	59	636	0	ENST00000241453.7:c.871G>T	p.Ala291Ser	p.A291S	ENST00000241453	NM_004119.2	291	Gca/Tca																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859879	117859879	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	72	337	1	ENST00000297338.2:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000297338	NM_006265.2	586	Cga/Tga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1795713	1795713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	16	145	0	ENST00000260795.2:c.52G>A	p.Ala18Thr	p.A18T	ENST00000260795		18	Gcc/Acc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748601	40748601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200545231		P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	101	446	0	ENST00000373198.4:c.2915G>A	p.Arg972Gln	p.R972Q	ENST00000373198	NM_133170.3	972	cGa/cAa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31405819	31405819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	47	268	0	ENST00000344624.3:c.3959C>T	p.Ala1320Val	p.A1320V	ENST00000344624		1320	gCg/gTg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115268949	115268949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	107	479	1	ENST00000438362.2:c.1661G>A	p.Arg554Gln	p.R554Q	ENST00000438362	NM_001242891.1	554	cGa/cAa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395770	45395770	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	59	373	2	ENST00000262160.6:c.364G>T	p.Gly122Ter	p.G122*	ENST00000262160	NM_005901.5	122	Gga/Tga																																																																														
INSR	3643	MSKCC	GRCh37	19	7166227	7166227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	143	628	1	ENST00000302850.5:c.1799C>T	p.Ser600Leu	p.S600L	ENST00000302850	NM_000208.2	600	tCg/tTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108080	30108080	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	110	681	0	ENST00000331968.5:c.727C>T	p.Arg243Ter	p.R243*	ENST00000331968	NM_002742.2	243	Cga/Tga																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422393	225422393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	74	571	0	ENST00000264414.4:c.247G>A	p.Glu83Lys	p.E83K	ENST00000264414	NM_003590.4	83	Gaa/Aaa																																																																														
ABL1	25	MSKCC	GRCh37	9	133750417	133750417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	181	579	0	ENST00000318560.5:c.1248C>A	p.Phe416Leu	p.F416L	ENST00000318560	NM_005157.4	416	ttC/ttA																																																																														
CCNE1	898	MSKCC	GRCh37	19	30312915	30312915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	46	617	0	ENST00000262643.3:c.718C>T	p.Arg240Cys	p.R240C	ENST00000262643	NM_001238.2	240	Cgt/Tgt																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180350	38180350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	181	649	0	ENST00000396334.3:c.198G>T	p.Glu66Asp	p.E66D	ENST00000396334	NM_002468.4	66	gaG/gaT																																																																														
SOS1	6654	MSKCC	GRCh37	2	39237759	39237759	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	85	517	0	ENST00000402219.2:c.2476C>T	p.Arg826Ter	p.R826*	ENST00000402219	NM_005633.3	826	Cga/Tga																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115261337	115261337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	104	430	0	ENST00000438362.2:c.2384G>A	p.Arg795Gln	p.R795Q	ENST00000438362	NM_001242891.1	795	cGa/cAa																																																																														
CBL	867	MSKCC	GRCh37	11	119170447	119170447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	122	430	1	ENST00000264033.4:c.2677C>T	p.Arg893Trp	p.R893W	ENST00000264033	NM_005188.3	893	Cgg/Tgg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816896	32816896	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	109	434	0	ENST00000354258.4:c.1429-1G>T		p.X477_splice	ENST00000354258	NM_000593.5	477																																																																															
WHSC1	7468	MSKCC	GRCh37	4	1902622	1902622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	214	593	0	ENST00000382891.5:c.241G>T	p.Asp81Tyr	p.D81Y	ENST00000382891	NM_133335.3	81	Gat/Tat																																																																														
MITF	4286	MSKCC	GRCh37	3	70008522	70008522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	120	412	0	ENST00000352241.4:c.1112G>A	p.Arg371Gln	p.R371Q	ENST00000352241	NM_198159.2	371	cGa/cAa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520524	176520524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	180	692	1	ENST00000292408.4:c.1369G>A	p.Asp457Asn	p.D457N	ENST00000292408	NM_213647.1	457	Gac/Aac																																																																														
MED12	9968	MSKCC	GRCh37	X	70356750	70356750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	161	542	0	ENST00000374080.3:c.5422C>T	p.Arg1808Trp	p.R1808W	ENST00000374080		1808	Cgg/Tgg																																																																														
MET	4233	MSKCC	GRCh37	7	116380071	116380071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	124	610	0	ENST00000397752.3:c.1460C>A	p.Ser487Tyr	p.S487Y	ENST00000397752	NM_000245.2	487	tCt/tAt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99162524	99162524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	30	351	0	ENST00000074304.5:c.1042G>A	p.Asp348Asn	p.D348N	ENST00000074304	NM_001134224.1	348	Gat/Aat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467884	66467884	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	62	461	0	ENST00000273854.3:c.385G>T	p.Glu129Ter	p.E129*	ENST00000273854	NM_004439.5	129	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539619	187539619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	67	497	0	ENST00000441802.2:c.8121C>A	p.Phe2707Leu	p.F2707L	ENST00000441802	NM_005245.3	2707	ttC/ttA																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181978	38181978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	149	483	0	ENST00000396334.3:c.602G>A	p.Arg201Gln	p.R201Q	ENST00000396334	NM_002468.4	201	cGa/cAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419991	152419991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	190	662	0	ENST00000206249.3:c.1678G>A	p.Val560Met	p.V560M	ENST00000206249	NM_000125.3	560	Gtg/Atg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292520	15292520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	149	635	0	ENST00000263388.2:c.2659G>A	p.Asp887Asn	p.D887N	ENST00000263388	NM_000435.2	887	Gat/Aat																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463300	25463300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	103	398	0	ENST00000264709.3:c.2193C>A	p.Phe731Leu	p.F731L	ENST00000264709	NM_175629.2	731	ttC/ttA																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2493176	2493176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	155	669	0	ENST00000355716.4:c.616C>A	p.Leu206Ile	p.L206I	ENST00000355716	NM_003820.2	206	Ctc/Atc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11193160	11193160	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	195	545	0	ENST00000361445.4:c.5341G>T	p.Glu1781Ter	p.E1781*	ENST00000361445	NM_004958.3	1781	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100151	27100151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	142	522	0	ENST00000324856.7:c.3947C>T	p.Ser1316Leu	p.S1316L	ENST00000324856	NM_006015.4	1316	tCg/tTg																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46532736	46532736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	27	436	0	ENST00000262741.5:c.342G>T	p.Lys114Asn	p.K114N	ENST00000262741	NM_003629.3	114	aaG/aaT																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739399	46739399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	116	500	1	ENST00000371975.4:c.1590G>T	p.Glu530Asp	p.E530D	ENST00000371975	NM_003579.3	530	gaG/gaT																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439599	51439599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	66	421	0	ENST00000262662.1:c.164G>T	p.Arg55Ile	p.R55I	ENST00000262662		55	aGa/aTa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78414881	78414881	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	121	431	0	ENST00000370768.2:c.1885A>C	p.Thr629Pro	p.T629P	ENST00000370768	NM_003902.3	629	Aca/Cca																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273024	115273024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	82	598	0	ENST00000438362.2:c.1349G>T	p.Arg450Ile	p.R450I	ENST00000438362	NM_001242891.1	450	aGa/aTa																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176153803	176153803	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	80	461	0	ENST00000367669.3:c.433G>T	p.Glu145Ter	p.E145*	ENST00000367669	NM_022457.5	145	Gaa/Taa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851720	63851720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	77	584	0	ENST00000279873.7:c.2498C>T	p.Ser833Leu	p.S833L	ENST00000279873	NM_032199.2	833	tCg/tTg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104309791	104309791	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	187	535	0	ENST00000369902.3:c.382A>G	p.Thr128Ala	p.T128A	ENST00000369902	NM_016169.3	128	Act/Gct																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710674	114710674	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	106	422	0	ENST00000543371.1:c.159A>C	p.Glu53Asp	p.E53D	ENST00000543371	NM_001198531.1	53	gaA/gaC																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14317386	14317386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	81	513	0	ENST00000256196.4:c.124G>A	p.Asp42Asn	p.D42N	ENST00000256196		42	Gat/Aat																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741354	17741354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	123	534	0	ENST00000250003.3:c.25C>T	p.Arg9Cys	p.R9C	ENST00000250003	NM_002478.4	9	Cgc/Tgc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136198	64136198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	150	503	0	ENST00000334205.4:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000334205	NM_003942.2	453	Gaa/Aaa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573220	64573220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	137	661	0	ENST00000337652.1:c.1087G>A	p.Glu363Lys	p.E363K	ENST00000337652	NM_130803.2	363	Gag/Aag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943686	71943686	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	203	628	0	ENST00000298229.2:c.1729T>G	p.Leu577Val	p.L577V	ENST00000298229	NM_001567.3	577	Ttg/Gtg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047169	77047169	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	141	630	0	ENST00000356341.3:c.1375G>T	p.Glu459Ter	p.E459*	ENST00000356341	NM_002576.4	459	Gaa/Taa																																																																														
EED	8726	MSKCC	GRCh37	11	85961420	85961420	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	25	288	0	ENST00000263360.6:c.197A>C	p.Lys66Thr	p.K66T	ENST00000263360	NM_003797.3	66	aAa/aCa																																																																														
EED	8726	MSKCC	GRCh37	11	85975288	85975288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	73	367	0	ENST00000263360.6:c.709G>A	p.Asp237Asn	p.D237N	ENST00000263360	NM_003797.3	237	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108137967	108137967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	66	477	0	ENST00000278616.4:c.2536C>A	p.Leu846Ile	p.L846I	ENST00000278616	NM_000051.3	846	Cta/Ata																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497542	125497542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	41	365	0	ENST00000428830.2:c.106G>A	p.Ala36Thr	p.A36T	ENST00000428830	NM_001114121.2	36	Gca/Aca																																																																														
KDM5A	5927	MSKCC	GRCh37	12	422251	422251	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	124	681	0	ENST00000399788.2:c.3007G>T	p.Glu1003Ter	p.E1003*	ENST00000399788	NM_001042603.1	1003	Gaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18762513	18762513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	27	483	0	ENST00000266497.5:c.4009T>C	p.Ser1337Pro	p.S1337P	ENST00000266497		1337	Tcc/Ccc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21636366	21636366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	104	653	0	ENST00000421138.2:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000421138		215	cGa/cAa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644535	21644535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	85	648	0	ENST00000421138.2:c.132G>T	p.Lys44Asn	p.K44N	ENST00000421138		44	aaG/aaT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246599	46246599	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138175128		P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	50	240	1	ENST00000334344.6:c.4693G>A	p.Val1565Ile	p.V1565I	ENST00000334344	NM_152641.2	1565	Gta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434090	49434090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	151	547	0	ENST00000301067.7:c.7463C>T	p.Ser2488Leu	p.S2488L	ENST00000301067	NM_003482.3	2488	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440080	49440080	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	199	663	0	ENST00000301067.7:c.4546G>T	p.Glu1516Ter	p.E1516*	ENST00000301067	NM_003482.3	1516	Gaa/Taa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858918	57858918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	77	685	0	ENST00000228682.2:c.414G>T	p.Gln138His	p.Q138H	ENST00000228682	NM_005269.2	138	caG/caT																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864690	57864690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	185	752	1	ENST00000228682.2:c.2167G>A	p.Asp723Asn	p.D723N	ENST00000228682	NM_005269.2	723	Gac/Aac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865440	57865440	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	51	770	0	ENST00000228682.2:c.2917A>G	p.Asn973Asp	p.N973D	ENST00000228682	NM_005269.2	973	Aat/Gat																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118806	115118806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	162	572	0	ENST00000257566.3:c.535G>A	p.Glu179Lys	p.E179K	ENST00000257566	NM_016569.3	179	Gaa/Aaa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120672	115120672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	197	694	0	ENST00000257566.3:c.334C>A	p.Leu112Ile	p.L112I	ENST00000257566	NM_016569.3	112	Ctt/Att																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536722	120536722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	148	608	0	ENST00000229340.5:c.370G>A	p.Asp124Asn	p.D124N	ENST00000229340	NM_006861.6	124	Gac/Aac																																																																														
MSI1	4440	MSKCC	GRCh37	12	120789156	120789156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	131	481	1	ENST00000257552.2:c.781G>A	p.Glu261Lys	p.E261K	ENST00000257552	NM_002442.3	261	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133212579	133212579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	112	516	0	ENST00000320574.5:c.5710A>G	p.Thr1904Ala	p.T1904A	ENST00000320574	NM_006231.2	1904	Aca/Gca																																																																														
POLE	5426	MSKCC	GRCh37	12	133226007	133226007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	164	659	0	ENST00000320574.5:c.3890C>T	p.Ser1297Leu	p.S1297L	ENST00000320574	NM_006231.2	1297	tCg/tTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609641	28609641	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	88	533	0	ENST00000241453.7:c.1588A>C	p.Asn530His	p.N530H	ENST00000241453	NM_004119.2	530	Aac/Cac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911082	32911082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	12	384	0	ENST00000380152.3:c.2590C>A	p.Gln864Lys	p.Q864K	ENST00000380152		864	Caa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953953	32953953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	46	399	0	ENST00000380152.3:c.9020G>T	p.Arg3007Ile	p.R3007I	ENST00000380152		3007	aGa/aTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32968912	32968912	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	26	481	0	ENST00000380152.3:c.9343A>C	p.Lys3115Gln	p.K3115Q	ENST00000380152		3115	Aag/Cag																																																																														
RB1	5925	MSKCC	GRCh37	13	49039195	49039195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	82	457	0	ENST00000267163.4:c.2273C>T	p.Ser758Leu	p.S758L	ENST00000267163	NM_000321.2	758	tCg/tTg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103506127	103506127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	32	277	0	ENST00000355739.4:c.285G>T	p.Lys95Asn	p.K95N	ENST00000355739	NM_000123.3	95	aaG/aaT																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524572	103524572	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	29	220	0	ENST00000355739.4:c.2703A>C	p.Lys901Asn	p.K901N	ENST00000355739	NM_000123.3	901	aaA/aaC																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066949	30066949	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	69	346	0	ENST00000331968.5:c.2182T>G	p.Phe728Val	p.F728V	ENST00000331968	NM_002742.2	728	Ttt/Gtt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610544	81610544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	88	410	0	ENST00000298171.2:c.2142G>T	p.Lys714Asn	p.K714N	ENST00000298171	NM_000369.2	714	aaG/aaT																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557374	95557374	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	70	545	0	ENST00000343455.3:c.5600T>G	p.Phe1867Cys	p.F1867C	ENST00000343455	NM_177438.2	1867	tTt/tGt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562324	95562324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	106	491	0	ENST00000343455.3:c.4933C>A	p.Pro1645Thr	p.P1645T	ENST00000343455	NM_177438.2	1645	Cca/Aca																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569693	95569693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	46	196	0	ENST00000343455.3:c.4040G>T	p.Arg1347Ile	p.R1347I	ENST00000343455	NM_177438.2	1347	aGa/aTa																																																																														
MGA	23269	MSKCC	GRCh37	15	41989216	41989216	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	107	562	1	ENST00000219905.7:c.2008T>G	p.Ser670Ala	p.S670A	ENST00000219905	NM_001164273.1	670	Tca/Gca																																																																														
MGA	23269	MSKCC	GRCh37	15	42034972	42034972	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	196	672	0	ENST00000219905.7:c.4814T>G	p.Phe1605Cys	p.F1605C	ENST00000219905	NM_001164273.1	1605	tTt/tGt																																																																														
MGA	23269	MSKCC	GRCh37	15	42054533	42054533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	57	353	0	ENST00000219905.7:c.7717C>A	p.Leu2573Ile	p.L2573I	ENST00000219905	NM_001164273.1	2573	Ctt/Att																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748112	43748112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	188	531	0	ENST00000382044.4:c.2694A>C	p.Gln898His	p.Q898H	ENST00000382044	NM_001141980.1	898	caA/caC																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88727493	88727493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	161	521	1	ENST00000360948.2:c.286G>A	p.Ala96Thr	p.A96T	ENST00000360948	NM_001012338.2	96	Gcc/Acc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631975	90631975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	153	520	0	ENST00000330062.3:c.378C>A	p.Phe126Leu	p.F126L	ENST00000330062	NM_002168.2	126	ttC/ttA																																																																														
BLM	641	MSKCC	GRCh37	15	91341451	91341451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	52	421	0	ENST00000355112.3:c.3242T>C	p.Val1081Ala	p.V1081A	ENST00000355112	NM_000057.2	1081	gTg/gCg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456503	99456503	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	22	352	1	ENST00000268035.6:c.1820A>C	p.Asn607Thr	p.N607T	ENST00000268035	NM_000875.3	607	aAt/aCt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348003	348003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	204	703	0	ENST00000262320.3:c.1503G>T	p.Lys501Asn	p.K501N	ENST00000262320	NM_003502.3	501	aaG/aaT																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639062	3639062	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	210	698	0	ENST00000294008.3:c.4577C>A	p.Pro1526His	p.P1526H	ENST00000294008	NM_032444.2	1526	cCt/cAt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639963	3639963	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142008398		P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	58	694	0	ENST00000294008.3:c.3676C>T	p.Arg1226Trp	p.R1226W	ENST00000294008	NM_032444.2	1226	Cgg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858294	9858296	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	115	521	0	ENST00000330684.3:c.3105_3107del	p.Asp1035del	p.D1035del	ENST00000330684	NM_001134407.1	1035	gaTGAg/gag																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646423	23646423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	169	626	0	ENST00000261584.4:c.1444C>A	p.Leu482Ile	p.L482I	ENST00000261584	NM_024675.3	482	Ctc/Atc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30133234	30133234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	184	635	0	ENST00000263025.4:c.264G>T	p.Glu88Asp	p.E88D	ENST00000263025	NM_002746.2	88	gaG/gaT																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650701	67650701	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	214	596	0	ENST00000264010.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000264010	NM_006565.3	336	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830023	72830023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	157	727	1	ENST00000268489.5:c.6558G>T	p.Gln2186His	p.Q2186H	ENST00000268489	NM_006885.3	2186	caG/caT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984568	72984568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	206	698	0	ENST00000268489.5:c.3016G>T	p.Asp1006Tyr	p.D1006Y	ENST00000268489	NM_006885.3	1006	Gac/Tac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349727	89349727	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	183	795	0	ENST00000301030.4:c.3223G>T	p.Glu1075Ter	p.E1075*	ENST00000301030	NM_001256183.1	1075	Gaa/Taa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351257	89351257	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	211	728	0	ENST00000301030.4:c.1693T>G	p.Leu565Val	p.L565V	ENST00000301030	NM_001256183.1	565	Tta/Gta																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805305	89805305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	165	557	1	ENST00000389301.3:c.4245C>A	p.Phe1415Leu	p.F1415L	ENST00000389301	NM_000135.2	1415	ttC/ttA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15950343	15950343	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	129	675	0	ENST00000268712.3:c.6601A>G	p.Thr2201Ala	p.T2201A	ENST00000268712	NM_006311.3	2201	Aca/Gca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16042336	16042336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	41	472	0	ENST00000268712.3:c.1338G>T	p.Glu446Asp	p.E446D	ENST00000268712	NM_006311.3	446	gaG/gaT																																																																														
NF1	4763	MSKCC	GRCh37	17	29496955	29496955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	64	458	0	ENST00000358273.4:c.526G>T	p.Asp176Tyr	p.D176Y	ENST00000358273	NM_001042492.2	176	Gat/Tat																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687088	37687088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	139	446	1	ENST00000447079.4:c.3992G>A	p.Arg1331Gln	p.R1331Q	ENST00000447079	NM_015083.1	1331	cGa/cAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884100	37884100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	167	642	1	ENST00000269571.5:c.3571G>A	p.Val1191Met	p.V1191M	ENST00000269571		1191	Gtg/Atg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40459482	40459482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	151	517	1	ENST00000345506.4:c.1743G>T	p.Leu581Phe	p.L581F	ENST00000345506	NM_003152.3	581	ttG/ttT																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462559	40462559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	154	616	0	ENST00000345506.4:c.2257G>A	p.Asp753Asn	p.D753N	ENST00000345506	NM_003152.3	753	Gac/Aac																																																																														
EZH1	2145	MSKCC	GRCh37	17	40864380	40864380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	107	676	0	ENST00000428826.2:c.1328G>A	p.Arg443Gln	p.R443Q	ENST00000428826		443	cGa/cAa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40880887	40880887	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	165	679	2	ENST00000428826.2:c.73C>T	p.Arg25Ter	p.R25*	ENST00000428826		25	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245728	41245728	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	90	752	0	ENST00000357654.3:c.1820A>C	p.Lys607Thr	p.K607T	ENST00000357654	NM_007294.3	607	aAa/aCa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760661	59760661	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	71	519	0	ENST00000259008.2:c.3746A>C	p.Lys1249Thr	p.K1249T	ENST00000259008	NM_032043.2	1249	aAg/aCg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760937	59760937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	98	682	0	ENST00000259008.2:c.3470G>T	p.Arg1157Ile	p.R1157I	ENST00000259008	NM_032043.2	1157	aGa/aTa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761390	59761390	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	100	513	0	ENST00000259008.2:c.3017A>C	p.Asn1006Thr	p.N1006T	ENST00000259008	NM_032043.2	1006	aAt/aCt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59820423	59820423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	93	544	0	ENST00000259008.2:c.2330G>A	p.Arg777His	p.R777H	ENST00000259008	NM_032043.2	777	cGt/cAt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371710	45371710	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	61	477	0	ENST00000262160.6:c.1280+1G>A		p.X427_splice	ENST00000262160	NM_005901.5	427																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48573507	48573507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	40	357	0	ENST00000342988.3:c.91G>A	p.Glu31Lys	p.E31K	ENST00000342988	NM_005359.5	31	Gag/Aag																																																																														
BCL2	596	MSKCC	GRCh37	18	60985593	60985593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	64	238	0	ENST00000333681.4:c.307G>T	p.Asp103Tyr	p.D103Y	ENST00000333681		103	Gac/Tac																																																																														
INSR	3643	MSKCC	GRCh37	19	7117083	7117083	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	200	508	2	ENST00000302850.5:c.4133G>T	p.Arg1378Leu	p.R1378L	ENST00000302850	NM_000208.2	1378	cGg/cTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7142908	7142908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	181	597	0	ENST00000302850.5:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000302850	NM_000208.2	821	Gag/Aag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10254578	10254578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	155	553	0	ENST00000340748.4:c.2932G>A	p.Asp978Asn	p.D978N	ENST00000340748		978	Gac/Aac																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10270389	10270389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	203	662	0	ENST00000340748.4:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000340748		393	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11101967	11101967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	89	589	0	ENST00000344626.4:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000344626	NM_003072.3	463	Gag/Aag																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627443	14627443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	131	605	1	ENST00000254322.2:c.627G>T	p.Lys209Asn	p.K209N	ENST00000254322	NM_006145.1	209	aaG/aaT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271691	15271691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	161	765	1	ENST00000263388.2:c.6748G>A	p.Glu2250Lys	p.E2250K	ENST00000263388	NM_000435.2	2250	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285027	15285027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	200	603	0	ENST00000263388.2:c.4588G>A	p.Asp1530Asn	p.D1530N	ENST00000263388	NM_000435.2	1530	Gac/Aac																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271295	18271295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	200	623	0	ENST00000222254.8:c.337G>A	p.Asp113Asn	p.D113N	ENST00000222254	NM_005027.3	113	Gac/Aac																																																																														
UPF1	5976	MSKCC	GRCh37	19	18963087	18963087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	183	622	0	ENST00000262803.5:c.954G>T	p.Lys318Asn	p.K318N	ENST00000262803	NM_002911.3	318	aaG/aaT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218098	36218098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	107	443	1	ENST00000222270.7:c.4045G>A	p.Asp1349Asn	p.D1349N	ENST00000222270	NM_014727.1	1349	Gac/Aac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228581	36228581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	210	661	0	ENST00000222270.7:c.7595G>T	p.Arg2532Leu	p.R2532L	ENST00000222270	NM_014727.1	2532	cGg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229393	36229393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	150	562	0	ENST00000222270.7:c.8083G>A	p.Glu2695Lys	p.E2695K	ENST00000222270	NM_014727.1	2695	Gag/Aag																																																																														
CD79A	973	MSKCC	GRCh37	19	42384736	42384736	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	104	342	0	ENST00000221972.3:c.499-1G>T		p.X167_splice	ENST00000221972	NM_021601.3	167																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868392	45868392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	70	668	1	ENST00000391945.4:c.385G>A	p.Asp129Asn	p.D129N	ENST00000391945	NM_000400.3	129	Gac/Aac																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082955	16082955	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	88	329	0	ENST00000281043.3:c.769G>T	p.Glu257Ter	p.E257*	ENST00000281043	NM_005378.4	257	Gag/Tag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222500	39222500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	53	638	0	ENST00000402219.2:c.3110C>A	p.Ser1037Tyr	p.S1037Y	ENST00000402219	NM_005633.3	1037	tCt/tAt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281838	39281838	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	58	572	0	ENST00000402219.2:c.637C>T	p.Arg213Ter	p.R213*	ENST00000402219	NM_005633.3	213	Cga/Tga																																																																														
REL	5966	MSKCC	GRCh37	2	61121626	61121626	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	22	410	0	ENST00000295025.8:c.248A>G	p.Asp83Gly	p.D83G	ENST00000295025	NM_002908.2	83	gAc/gGc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61722723	61722723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	83	478	0	ENST00000401558.2:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000401558	NM_003400.3	305	cGa/cAa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095749	178095749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	76	550	0	ENST00000397062.3:c.1582G>T	p.Asp528Tyr	p.D528Y	ENST00000397062	NM_006164.4	528	Gat/Tat																																																																														
PMS1	5378	MSKCC	GRCh37	2	190656569	190656569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	51	271	0	ENST00000441310.2:c.34C>A	p.Leu12Ile	p.L12I	ENST00000441310	NM_000534.4	12	Ctt/Att																																																																														
PMS1	5378	MSKCC	GRCh37	2	190656579	190656579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	24	280	0	ENST00000441310.2:c.44C>A	p.Ser15Tyr	p.S15Y	ENST00000441310	NM_000534.4	15	tCt/tAt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682764	190682764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	41	350	0	ENST00000441310.2:c.440G>T	p.Arg147Ile	p.R147I	ENST00000441310	NM_000534.4	147	aGa/aTa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728717	190728717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	31	354	0	ENST00000441310.2:c.2105C>A	p.Ser702Tyr	p.S702Y	ENST00000441310	NM_000534.4	702	tCt/tAt																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204737531	204737531	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	38	278	0	ENST00000302823.3:c.668A>G	p.Asn223Ser	p.N223S	ENST00000302823	NM_005214.4	223	aAt/aGt																																																																														
BARD1	580	MSKCC	GRCh37	2	215657105	215657105	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	69	558	0	ENST00000260947.4:c.280G>T	p.Asp94Tyr	p.D94Y	ENST00000260947	NM_000465.2	94	Gac/Tac																																																																														
INHA	3623	MSKCC	GRCh37	2	220439527	220439527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	68	616	1	ENST00000243786.2:c.380C>A	p.Thr127Asn	p.T127N	ENST00000243786	NM_002191.3	127	aCt/aAt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660093	227660093	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143913301		P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	138	517	1	ENST00000305123.5:c.3362C>T	p.Ala1121Val	p.A1121V	ENST00000305123	NM_005544.2	1121	gCg/gTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739013	40739013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	135	437	0	ENST00000373198.4:c.3271C>A	p.Leu1091Ile	p.L1091I	ENST00000373198	NM_133170.3	1091	Ctc/Atc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265474	46265474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	34	237	0	ENST00000371998.3:c.2344G>T	p.Asp782Tyr	p.D782Y	ENST00000371998		782	Gac/Tac																																																																														
AURKA	6790	MSKCC	GRCh37	20	54956596	54956596	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	17	483	0	ENST00000312783.6:c.598T>G	p.Phe200Val	p.F200V	ENST00000312783	NM_198436.1	200	Ttc/Gtc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321707	62321707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	135	549	0	ENST00000508582.2:c.2398G>A	p.Glu800Lys	p.E800K	ENST00000508582		800	Gag/Aag																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513345	44513345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	137	566	0	ENST00000291552.4:c.590C>T	p.Ser197Phe	p.S197F	ENST00000291552	NM_006758.2	197	tCc/tTc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44514895	44514895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	99	359	0	ENST00000291552.4:c.352C>T	p.Arg118Cys	p.R118C	ENST00000291552	NM_006758.2	118	Cgc/Tgc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22143007	22143007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	58	466	0	ENST00000215832.6:c.700C>A	p.Leu234Ile	p.L234I	ENST00000215832	NM_002745.4	234	Ctt/Att																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24143243	24143243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	65	683	0	ENST00000263121.7:c.475G>T	p.Asp159Tyr	p.D159Y	ENST00000263121	NM_003073.3	159	Gac/Tac																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29099528	29099528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	70	342	0	ENST00000328354.6:c.873T>G	p.Phe291Leu	p.F291L	ENST00000328354	NM_007194.3	291	ttT/ttG																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434126	12434126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	51	409	0	ENST00000287820.6:c.494G>T	p.Arg165Ile	p.R165I	ENST00000287820	NM_015869.4	165	aGa/aTa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52685784	52685784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	29	593	0	ENST00000394830.3:c.688C>A	p.Leu230Ile	p.L230I	ENST00000394830	NM_018313.4	230	Ctc/Atc																																																																														
MITF	4286	MSKCC	GRCh37	3	69987063	69987063	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	182	500	0	ENST00000352241.4:c.445A>G	p.Asn149Asp	p.N149D	ENST00000352241	NM_198159.2	149	Aat/Gat																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73112849	73112849	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	76	362	1	ENST00000356692.5:c.445C>T	p.Arg149Ter	p.R149*	ENST00000356692		149	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134977855	134977855	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	65	408	0	ENST00000398015.3:c.2848G>T	p.Asp950Tyr	p.D950Y	ENST00000398015	NM_004441.4	950	Gac/Tac																																																																														
ATR	545	MSKCC	GRCh37	3	142279297	142279297	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	21	413	0	ENST00000350721.4:c.1350-1G>T		p.X450_splice	ENST00000350721	NM_001184.3	450																																																																															
ATR	545	MSKCC	GRCh37	3	142281633	142281633	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	56	559	0	ENST00000350721.4:c.611T>G	p.Phe204Cys	p.F204C	ENST00000350721	NM_001184.3	204	tTt/tGt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431050	181431050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	162	553	0	ENST00000325404.1:c.902G>C	p.Gly301Ala	p.G301A	ENST00000325404	NM_003106.3	301	gGc/gCc																																																																														
BCL6	604	MSKCC	GRCh37	3	187451361	187451361	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	103	361	0	ENST00000232014.4:c.121G>T	p.Glu41Ter	p.E41*	ENST00000232014	NM_001130845.1	41	Gag/Tag																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1957783	1957783	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	195	673	0	ENST00000382891.5:c.2749G>T	p.Glu917Ter	p.E917*	ENST00000382891	NM_133335.3	917	Gaa/Taa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133484	55133484	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	96	470	0	ENST00000257290.5:c.788A>C	p.Glu263Ala	p.E263A	ENST00000257290	NM_006206.4	263	gAa/gCa																																																																														
KDR	3791	MSKCC	GRCh37	4	55956198	55956198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	113	577	1	ENST00000263923.4:c.3117G>T	p.Lys1039Asn	p.K1039N	ENST00000263923	NM_002253.2	1039	aaG/aaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55987310	55987310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	25	612	0	ENST00000263923.4:c.115G>T	p.Asp39Tyr	p.D39Y	ENST00000263923	NM_002253.2	39	Gac/Tac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66218764	66218764	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	51	280	0	ENST00000273854.3:c.2294del	p.Leu765Ter	p.L765*	ENST00000273854	NM_004439.5	765	tTg/tg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286238	66286238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	95	488	0	ENST00000273854.3:c.1448A>G	p.Asn483Ser	p.N483S	ENST00000273854	NM_004439.5	483	aAc/aGc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66468010	66468010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	19	377	0	ENST00000273854.3:c.259G>T	p.Gly87Cys	p.G87C	ENST00000273854	NM_004439.5	87	Ggt/Tgt																																																																														
TET2	54790	MSKCC	GRCh37	4	106157251	106157251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	98	464	0	ENST00000380013.4:c.2152C>A	p.Leu718Ile	p.L718I	ENST00000380013	NM_001127208.2	718	Ctt/Att																																																																														
INPP4B	8821	MSKCC	GRCh37	4	142950066	142950066	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	55	454	0	ENST00000262992.4:c.2644G>T	p.Glu882Ter	p.E882*	ENST00000262992	NM_001101669.1	882	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187516946	187516946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	40	518	0	ENST00000441802.2:c.13035G>T	p.Lys4345Asn	p.K4345N	ENST00000441802	NM_005245.3	4345	aaG/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521211	187521211	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	128	688	0	ENST00000441802.2:c.11944T>G	p.Leu3982Val	p.L3982V	ENST00000441802	NM_005245.3	3982	Ttg/Gtg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629031	187629031	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	117	672	0	ENST00000441802.2:c.1951G>T	p.Glu651Ter	p.E651*	ENST00000441802	NM_005245.3	651	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1260639	1260639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	178	587	0	ENST00000310581.5:c.2920C>T	p.Leu974Phe	p.L974F	ENST00000310581	NM_198253.2	974	Ctc/Ttc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515145	31515145	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	198	790	1	ENST00000344624.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000344624		414	Cga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38968131	38968131	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs143280630		P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	37	306	0	ENST00000357387.3:c.974G>A	p.Arg325Gln	p.R325Q	ENST00000357387	NM_152756.3	325	cGa/cAa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38991143	38991143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	83	545	0	ENST00000357387.3:c.491C>T	p.Ser164Phe	p.S164F	ENST00000357387	NM_152756.3	164	tCt/tTt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178670	56178670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	52	286	0	ENST00000399503.3:c.3643G>T	p.Asp1215Tyr	p.D1215Y	ENST00000399503	NM_005921.1	1215	Gat/Tat																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752417	57752417	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	39	334	0	ENST00000274289.3:c.1157-1G>T		p.X386_splice	ENST00000274289	NM_006622.3	386																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67522657	67522657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	68	358	0	ENST00000274335.5:c.154G>T	p.Glu52Ter	p.E52*	ENST00000274335		52	Gaa/Taa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79966120	79966120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	16	497	0	ENST00000265081.6:c.784G>T	p.Asp262Tyr	p.D262Y	ENST00000265081	NM_002439.4	262	Gat/Tat																																																																														
MSH3	4437	MSKCC	GRCh37	5	80064770	80064770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	62	472	1	ENST00000265081.6:c.2201G>A	p.Arg734Gln	p.R734Q	ENST00000265081	NM_002439.4	734	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112173284	112173284	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	14	243	0	ENST00000257430.4:c.1993T>G	p.Leu665Val	p.L665V	ENST00000257430	NM_000038.5	665	Tta/Gta																																																																														
APC	324	MSKCC	GRCh37	5	112174926	112174926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	19	322	1	ENST00000257430.4:c.3635C>A	p.Ser1212Tyr	p.S1212Y	ENST00000257430	NM_000038.5	1212	tCt/tAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911583	131911583	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	28	418	0	ENST00000265335.6:c.328G>T	p.Glu110Ter	p.E110*	ENST00000265335		110	Gaa/Taa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460452	149460452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	194	705	0	ENST00000286301.3:c.185C>T	p.Ser62Phe	p.S62F	ENST00000286301	NM_005211.3	62	tCt/tTt																																																																														
NPM1	4869	MSKCC	GRCh37	5	170832364	170832364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	42	242	0	ENST00000296930.5:c.728C>A	p.Ser243Tyr	p.S243Y	ENST00000296930	NM_002520.6	243	tCt/tAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180040063	180040063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	164	604	1	ENST00000261937.6:c.3379C>T	p.Arg1127Trp	p.R1127W	ENST00000261937	NM_182925.4	1127	Cgg/Tgg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043477	180043477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	172	609	0	ENST00000261937.6:c.3109G>T	p.Asp1037Tyr	p.D1037Y	ENST00000261937	NM_182925.4	1037	Gac/Tac																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057000	180057000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	181	741	0	ENST00000261937.6:c.619G>A	p.Glu207Lys	p.E207K	ENST00000261937	NM_182925.4	207	Gag/Aag																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911137	29911137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	59	419	0	ENST00000376809.5:c.436G>A	p.Asp146Asn	p.D146N	ENST00000376809	NM_002116.7	146	Gat/Aat																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675739	30675739	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	179	898	0	ENST00000376406.3:c.2617G>T	p.Glu873Ter	p.E873*	ENST00000376406	NM_014641.2	873	Gaa/Taa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288561	33288561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	121	469	1	ENST00000374542.5:c.991G>A	p.Asp331Asn	p.D331N	ENST00000374542	NM_001141970.1	331	Gat/Aat																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120673	94120673	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	97	477	0	ENST00000369303.4:c.378C>A	p.Tyr126Ter	p.Y126*	ENST00000369303	NM_004440.3	126	taC/taA																																																																														
FYN	2534	MSKCC	GRCh37	6	112041049	112041049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	150	464	0	ENST00000368678.4:c.206C>A	p.Ser69Tyr	p.S69Y	ENST00000368678		69	tCt/tAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710660	117710660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	78	394	0	ENST00000368508.3:c.1612G>A	p.Glu538Lys	p.E538K	ENST00000368508	NM_002944.2	538	Gaa/Aaa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199684	138199684	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	129	497	0	ENST00000237289.4:c.1102C>G	p.His368Asp	p.H368D	ENST00000237289	NM_001270507.1	368	Cac/Gac																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444392	50444392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	124	424	0	ENST00000331340.3:c.322G>A	p.Gly108Arg	p.G108R	ENST00000331340	NM_006060.4	108	Gga/Aga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55224493	55224493	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	87	529	0	ENST00000275493.2:c.1175T>G	p.Leu392Arg	p.L392R	ENST00000275493	NM_005228.3	392	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55269044	55269044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	214	653	0	ENST00000275493.2:c.3110C>A	p.Ser1037Tyr	p.S1037Y	ENST00000275493	NM_005228.3	1037	tCt/tAt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513046	106513046	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	43	382	0	ENST00000359195.3:c.2060G>T	p.Arg687Ile	p.R687I	ENST00000359195	NM_002649.2	687	aGa/aTa																																																																														
MET	4233	MSKCC	GRCh37	7	116340036	116340036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	14	394	0	ENST00000397752.3:c.898C>A	p.Leu300Ile	p.L300I	ENST00000397752	NM_000245.2	300	Ctc/Atc																																																																														
MET	4233	MSKCC	GRCh37	7	116340213	116340213	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	68	346	0	ENST00000397752.3:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000397752	NM_000245.2	359	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879198	151879198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	131	579	0	ENST00000262189.6:c.5747G>T	p.Arg1916Ile	p.R1916I	ENST00000262189	NM_170606.2	1916	aGa/aTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884431	151884431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	72	427	0	ENST00000262189.6:c.4924G>T	p.Glu1642Ter	p.E1642*	ENST00000262189	NM_170606.2	1642	Gag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884454	151884454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	36	439	0	ENST00000262189.6:c.4901G>T	p.Arg1634Ile	p.R1634I	ENST00000262189	NM_170606.2	1634	aGa/aTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132814	152132815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	32	388	0	ENST00000262189.6:c.57dup	p.Glu20ArgfsTer39	p.E20Rfs*39	ENST00000262189	NM_170606.2	19	-/C																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205277	38205277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	197	815	0	ENST00000317025.8:c.413C>T	p.Ser138Leu	p.S138L	ENST00000317025	NM_023034.1	138	tCg/tTg																																																																														
LYN	4067	MSKCC	GRCh37	8	56866459	56866459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	173	635	0	ENST00000519728.1:c.706G>T	p.Asp236Tyr	p.D236Y	ENST00000519728	NM_002350.3	236	Gat/Tat																																																																														
LYN	4067	MSKCC	GRCh37	8	56922484	56922484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	106	451	0	ENST00000519728.1:c.1354G>A	p.Val452Met	p.V452M	ENST00000519728	NM_002350.3	452	Gtg/Atg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69012059	69012059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	61	495	0	ENST00000288368.4:c.2696G>T	p.Arg899Ile	p.R899I	ENST00000288368	NM_024870.2	899	aGa/aTa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70971078	70971078	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	115	590	0	ENST00000276594.2:c.1184-1G>A		p.X395_splice	ENST00000276594	NM_024504.3	395																																																																															
NBN	4683	MSKCC	GRCh37	8	90993708	90993708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	65	402	0	ENST00000265433.3:c.215C>A	p.Ser72Tyr	p.S72Y	ENST00000265433	NM_002485.4	72	tCt/tAt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141559274	141559274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	181	631	1	ENST00000220592.5:c.1527G>T	p.Lys509Asn	p.K509N	ENST00000220592	NM_012154.3	509	aaG/aaT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518048	8518048	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	131	584	2	ENST00000356435.5:c.1343T>G	p.Ile448Ser	p.I448S	ENST00000356435		448	aTc/aGc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635202	87635202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	156	545	0	ENST00000277120.3:c.2254G>A	p.Val752Ile	p.V752I	ENST00000277120		752	Gtc/Atc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786013	135786013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	189	617	0	ENST00000298552.3:c.1208C>T	p.Ser403Leu	p.S403L	ENST00000298552	NM_001162426.1	403	tCg/tTg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137325974	137325974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	164	593	0	ENST00000481739.1:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000481739	NM_002957.4	388	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402759	139402759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	200	669	2	ENST00000277541.6:c.3250G>A	p.Glu1084Lys	p.E1084K	ENST00000277541	NM_017617.3	1084	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409778	139409778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	177	604	1	ENST00000277541.6:c.1978G>A	p.Asp660Asn	p.D660N	ENST00000277541	NM_017617.3	660	Gat/Aat																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814941	139814941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	155	474	2	ENST00000247668.2:c.934G>T	p.Asp312Tyr	p.D312Y	ENST00000247668	NM_021138.3	312	Gac/Tac																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317485	1317485	+	downstream_gene_variant	3'Flank	SNP	A	A	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	53	726	0				ENST00000381566																																																																																	
CRLF2	64109	MSKCC	GRCh37	X	1321378	1321378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	121	477	0	ENST00000381566.1:c.377G>T	p.Arg126Ile	p.R126I	ENST00000381566		126	aGa/aTa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1325375	1325375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	141	552	0	ENST00000381566.1:c.300G>T	p.Arg100Ser	p.R100S	ENST00000381566		100	agG/agT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932250	39932250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	255	847	0	ENST00000378444.4:c.2349G>T	p.Lys783Asn	p.K783N	ENST00000378444	NM_001123385.1	783	aaG/aaT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932376	39932376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	191	830	0	ENST00000378444.4:c.2223G>T	p.Glu741Asp	p.E741D	ENST00000378444	NM_001123385.1	741	gaG/gaT																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945216	44945216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	65	508	0	ENST00000377967.4:c.3540C>A	p.Phe1180Leu	p.F1180L	ENST00000377967	NM_021140.2	1180	ttC/ttA																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030456	47030456	+	intron_variant	Intron	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	77	669	0	ENST00000329236.7:c.201+1559G>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
AMER1	139285	MSKCC	GRCh37	X	63413051	63413051	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs199995488		P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	194	822	0	ENST00000330258.3:c.116G>T	p.Gly39Val	p.G39V	ENST00000330258	NM_152424.3	39	gGa/gTa																																																																														
AR	367	MSKCC	GRCh37	X	66942696	66942696	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	82	501	0	ENST00000374690.3:c.2477A>T	p.Lys826Ile	p.K826I	ENST00000374690	NM_000044.3	826	aAa/aTa																																																																														
AR	367	MSKCC	GRCh37	X	66942737	66942737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	109	533	0	ENST00000374690.3:c.2518G>A	p.Asp840Asn	p.D840N	ENST00000374690	NM_000044.3	840	Gat/Aat																																																																														
MED12	9968	MSKCC	GRCh37	X	70339602	70339602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	34	614	0	ENST00000374080.3:c.271C>T	p.Arg91Cys	p.R91C	ENST00000374080		91	Cgc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76778875	76778875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	50	573	0	ENST00000373344.5:c.6704C>A	p.Thr2235Asn	p.T2235N	ENST00000373344	NM_000489.3	2235	aCc/aAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76845325	76845325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	28	510	0	ENST00000373344.5:c.6196G>T	p.Asp2066Tyr	p.D2066Y	ENST00000373344	NM_000489.3	2066	Gat/Tat																																																																														
ATRX	546	MSKCC	GRCh37	X	76937764	76937764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	74	652	0	ENST00000373344.5:c.2984C>A	p.Pro995His	p.P995H	ENST00000373344	NM_000489.3	995	cCt/cAt																																																																														
XIAP	331	MSKCC	GRCh37	X	123034360	123034360	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	59	391	0	ENST00000355640.3:c.1117A>T	p.Asn373Tyr	p.N373Y	ENST00000355640		373	Aat/Tat																																																																														
STAG2	10735	MSKCC	GRCh37	X	123181301	123181301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	42	310	0	ENST00000218089.9:c.765G>T	p.Met255Ile	p.M255I	ENST00000218089	NM_001042749.1	255	atG/atT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123190023	123190023	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	118	686	0	ENST00000218089.9:c.1242T>G	p.Tyr414Ter	p.Y414*	ENST00000218089	NM_001042749.1	414	taT/taG																																																																														
STAG2	10735	MSKCC	GRCh37	X	123210233	123210233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	102	619	1	ENST00000218089.9:c.2585G>T	p.Arg862Ile	p.R862I	ENST00000218089	NM_001042749.1	862	aGa/aTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220576	123220576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	89	515	0	ENST00000218089.9:c.3233C>A	p.Ser1078Tyr	p.S1078Y	ENST00000218089	NM_001042749.1	1078	tCt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	79	597	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	55	396	1	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928078	178928080	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0032593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	84	571	0	ENST00000263967.3:c.1359_1361delAGA	p.Glu453del	p.E453del	ENST00000263967	NM_006218.2	452	ttAGAa/tta																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0032593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	52	307	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0032593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	52	307	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0032593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	52	307	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	24	320	0				ENST00000310581	NM_198253.2																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139413072	139413072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	47	678	0	ENST00000277541.6:c.1070T>C	p.Phe357Ser	p.F357S	ENST00000277541	NM_017617.3	357	tTc/tCc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	21	364	3				ENST00000310581	NM_198253.2																																																																																
ACVR1	90	MSKCC	GRCh37	2	158622516	158622516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	42	678	0	ENST00000263640.3:c.983G>A	p.Gly328Glu	p.G328E	ENST00000263640	NM_001105.4	328	gGg/gAg																																																																														
RHOA	387	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	65	799	0	ENST00000418115.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000418115	NM_001664.2	42	tAt/tGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	32	418	0	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	32	418	0	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
TET1	80312	MSKCC	GRCh37	10	70450712	70450712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	36	539	0	ENST00000373644.4:c.5552C>T	p.Ser1851Phe	p.S1851F	ENST00000373644	NM_030625.2	1851	tCc/tTc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128051163	128051163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	42	674	0	ENST00000285398.2:c.160G>A	p.Asp54Asn	p.D54N	ENST00000285398	NM_000122.1	54	Gat/Aat																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257880	19257880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	60	995	0	ENST00000162023.5:c.506C>T	p.Pro169Leu	p.P169L	ENST00000162023		169	cCc/cTc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845922	156845922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	48	912	1	ENST00000524377.1:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000524377	NM_002529.3	518	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	32	418	0	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622332	1622332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	57	917	0	ENST00000344749.5:c.632C>T	p.Pro211Leu	p.P211L	ENST00000344749	NM_001136139.2	211	cCc/cTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396248	139396249	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	53	800	2	ENST00000277541.6:c.5589_5590delinsTT	p.Gln1864Ter	p.Q1864*	ENST00000277541	NM_017617.3	1863	ccCCag/ccTTag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467778	50467778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	25	444	0	ENST00000331340.3:c.1013C>T	p.Ser338Phe	p.S338F	ENST00000331340	NM_006060.4	338	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274310	5274310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	53	710	0	ENST00000357368.4:c.137C>T	p.Ser46Leu	p.S46L	ENST00000357368	NM_002850.3	46	tCg/tTg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73355849	73355849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	29	552	1	ENST00000377767.4:c.122G>A	p.Gly41Glu	p.G41E	ENST00000377767	NM_014953.3	41	gGg/gAg																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439578	51439578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	61	375	0	ENST00000262662.1:c.143G>A	p.Gly48Glu	p.G48E	ENST00000262662		48	gGa/gAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169941	32169941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	49	803	0	ENST00000375023.3:c.3667C>T	p.Leu1223Phe	p.L1223F	ENST00000375023	NM_004557.3	1223	Ctc/Ttc																																																																														
PARK2	5071	MSKCC	GRCh37	6	161969941	161969941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	43	482	0	ENST00000366898.1:c.1028C>T	p.Pro343Leu	p.P343L	ENST00000366898	NM_004562.2	343	cCg/cTg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78433853	78433853	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	69	525	0	ENST00000370768.2:c.246T>G	p.Asn82Lys	p.N82K	ENST00000370768	NM_003902.3	82	aaT/aaG																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166128	118166128	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	52	373	0	ENST00000369448.3:c.638A>T	p.Glu213Val	p.E213V	ENST00000369448	NM_017709.3	213	gAg/gTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332295	70332295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	28	422	0	ENST00000373644.4:c.200C>T	p.Pro67Leu	p.P67L	ENST00000373644	NM_030625.2	67	cCc/cTc																																																																														
PGR	5241	MSKCC	GRCh37	11	100922212	100922212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	45	471	0	ENST00000325455.5:c.2300C>T	p.Ser767Phe	p.S767F	ENST00000325455	NM_001202474.3	767	tCc/tTc																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981586	101981587	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	10	152	0	ENST00000282441.5:c.7_8delinsTT	p.Pro3Phe	p.P3F	ENST00000282441	NM_001130145.2	3	CCc/TTc																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981629	101981629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	12	108	0	ENST00000282441.5:c.50G>A	p.Gly17Glu	p.G17E	ENST00000282441	NM_001130145.2	17	gGg/gAg																																																																														
ATM	472	MSKCC	GRCh37	11	108119659	108119659	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	14	165	0	ENST00000278616.4:c.1066-1G>A		p.X356_splice	ENST00000278616	NM_000051.3	356																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427168	49427169	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	51	897	1	ENST00000301067.7:c.11319_11320delinsTT	p.Gln3774Ter	p.Q3774*	ENST00000301067	NM_003482.3	3773	ccCCag/ccTTag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865101	57865101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	60	955	0	ENST00000228682.2:c.2578C>T	p.Leu860Phe	p.L860F	ENST00000228682	NM_005269.2	860	Ctc/Ttc																																																																														
RAB35	11021	MSKCC	GRCh37	12	120541711	120541711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	45	758	0	ENST00000229340.5:c.146C>T	p.Thr49Ile	p.T49I	ENST00000229340	NM_006861.6	49	aCc/aTc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093405	30093405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	41	775	1	ENST00000331968.5:c.1858C>T	p.Pro620Ser	p.P620S	ENST00000331968	NM_002742.2	620	Cca/Tca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993884	72993884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	34	561	0	ENST00000268489.5:c.161G>A	p.Arg54Lys	p.R54K	ENST00000268489	NM_006885.3	54	aGg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578267	+	frameshift_variant	Frame_Shift_Del	DEL	GGATA	GGATA	-			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	46	666	0	ENST00000269305.4:c.582_586del	p.Ile195SerfsTer12	p.I195Sfs*12	ENST00000269305	NM_001126112.2	194	ctTATCCga/ctga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578456	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	CA			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	61	853	3	ENST00000269305.4:c.474_476delinsTG	p.Met160TrpfsTer10	p.M160Wfs*10	ENST00000269305	NM_001126112.2	158	cgCGCc/cgTGc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615758	1615758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	47	796	1	ENST00000344749.5:c.1513G>A	p.Glu505Lys	p.E505K	ENST00000344749	NM_001136139.2	505	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295181	15295181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	61	916	0	ENST00000263388.2:c.2491G>A	p.Gly831Arg	p.G831R	ENST00000263388	NM_000435.2	831	Ggg/Agg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257163	19257163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	36	595	1	ENST00000162023.5:c.800C>T	p.Pro267Leu	p.P267L	ENST00000162023		267	cCt/cTt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972866	25972866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	39	680	1	ENST00000435504.4:c.1559C>T	p.Ser520Phe	p.S520F	ENST00000435504		520	tCt/tTt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026521	48026521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	36	568	0	ENST00000234420.5:c.1399G>T	p.Gly467Cys	p.G467C	ENST00000234420	NM_000179.2	467	Ggc/Tgc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225378246	225378246	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	27	355	0	ENST00000264414.4:c.649T>A	p.Phe217Ile	p.F217I	ENST00000264414	NM_003590.4	217	Ttt/Att																																																																														
ERG	2078	MSKCC	GRCh37	21	39755552	39755552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	31	517	0	ENST00000288319.7:c.1213G>A	p.Glu405Lys	p.E405K	ENST00000288319	NM_182918.3	405	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41566441	41566442	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	66	490	0	ENST00000263253.7:c.4318_4319delinsTT	p.Pro1440Leu	p.P1440L	ENST00000263253	NM_001429.3	1440	CCa/TTa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713733	30713734	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	20	439	1	ENST00000359013.4:c.1133_1134delinsTT	p.Ser378Phe	p.S378F	ENST00000359013	NM_001024847.2	378	tCC/tTT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163685	47163685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	32	546	0	ENST00000409792.3:c.2441C>T	p.Pro814Leu	p.P814L	ENST00000409792	NM_014159.6	814	cCt/cTt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934020	49934020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	60	767	0	ENST00000296474.3:c.2392C>A	p.His798Asn	p.H798N	ENST00000296474	NM_002447.2	798	Cac/Aac																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090569	71090569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	44	569	0	ENST00000318789.4:c.779C>T	p.Ser260Phe	p.S260F	ENST00000318789	NM_032682.5	260	tCc/tTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390077	89390077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	38	377	0	ENST00000336596.2:c.826G>A	p.Gly276Ser	p.G276S	ENST00000336596	NM_005233.5	276	Ggt/Agt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413711	138413712	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	26	428	1	ENST00000289153.2:c.1808_1809delinsTT	p.Pro603Leu	p.P603L	ENST00000289153	NM_006219.2	603	cCC/cTT																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384055	84384055	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	32	718	1	ENST00000321945.7:c.797G>A	p.Arg266Lys	p.R266K	ENST00000321945	NM_139076.2	266	aGa/aAa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149512440	149512441	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	37	607	1	ENST00000261799.4:c.999_1000delinsTT	p.Arg334Trp	p.R334W	ENST00000261799	NM_002609.3	333	agCCgg/agTTgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117714451	117714451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	38	513	1	ENST00000368508.3:c.1198A>G	p.Ile400Val	p.I400V	ENST00000368508	NM_002944.2	400	Atc/Gtc																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683575	162683575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	39	561	0	ENST00000366898.1:c.394C>T	p.Pro132Ser	p.P132S	ENST00000366898	NM_004562.2	132	Cca/Tca																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431622	6431622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	36	422	0	ENST00000356142.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000356142	NM_018890.3	59	Gct/Act																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367320	50367320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	35	368	0	ENST00000331340.3:c.127G>A	p.Gly43Arg	p.G43R	ENST00000331340	NM_006060.4	43	Gga/Aga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55227845	55227845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	29	367	0	ENST00000275493.2:c.1312C>T	p.Leu438Phe	p.L438F	ENST00000275493	NM_005228.3	438	Ctt/Ttt																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128434613	128434613	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	52	681	0	ENST00000265960.3:c.241A>G	p.Arg81Gly	p.R81G	ENST00000265960	NM_001006617.1	81	Aga/Gga																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652314	48652314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	64	463	0	ENST00000376670.3:c.985G>A	p.Gly329Arg	p.G329R	ENST00000376670	NM_002049.3	329	Gga/Aga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227995	53227995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	54	388	0	ENST00000375401.3:c.2319G>A	p.Trp773Ter	p.W773*	ENST00000375401	NM_004187.3	773	tgG/tgA																																																																														
MSH3	4437	MSKCC	GRCh37	5	79974801	79974803	+	missense_variant	Missense_Mutation	ONP	CTC	CTC	TTT			P-0032660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	44	693	0	ENST00000265081.6:c.1229_1231delinsTTT	p.Ser410_Arg411delinsPheCys	p.S410_R411delinsFC	ENST00000265081	NM_002439.4	410	tCTCgt/tTTTgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	23	268	0				ENST00000310581	NM_198253.2																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178098957	178098957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	54	356	0	ENST00000397062.3:c.88C>T	p.Leu30Phe	p.L30F	ENST00000397062	NM_006164.4	30	Ctt/Ttt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	43	340	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	43	340	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
MET	4233	MSKCC	GRCh37	7	116395529	116395529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	37	442	0	ENST00000397752.3:c.1822G>C	p.Glu608Gln	p.E608Q	ENST00000397752	NM_000245.2	608	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	48	708	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	43	340	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CASP8	841	MSKCC	GRCh37	2	202131498	202131498	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	30	333	0	ENST00000358485.4:c.466C>T	p.Gln156Ter	p.Q156*	ENST00000358485	NM_001080125.1	156	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	59	740	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743602	46743602	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	50	642	0	ENST00000371975.4:c.1983G>T	p.Leu661Phe	p.L661F	ENST00000371975	NM_003579.3	661	ttG/ttT																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84383980	84383980	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	49	638	0	ENST00000321945.7:c.872C>G	p.Ser291Cys	p.S291C	ENST00000321945	NM_139076.2	291	tCt/tGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541533	187541534	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	30	373	0	ENST00000441802.2:c.6206_6207insA	p.Ile2070HisfsTer7	p.I2070Hfs*7	ENST00000441802	NM_005245.3	2069	gtc/gtAc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671730	30671730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	54	734	0	ENST00000376406.3:c.5230G>A	p.Ala1744Thr	p.A1744T	ENST00000376406	NM_014641.2	1744	Gca/Aca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	206	349	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435557	18435557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	16	243	0	ENST00000266497.5:c.542C>T	p.Ser181Phe	p.S181F	ENST00000266497		181	tCc/tTc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63760038	63760038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	41	367	0	ENST00000279873.7:c.691C>T	p.His231Tyr	p.H231Y	ENST00000279873	NM_032199.2	231	Cac/Tac																																																																														
AR	367	MSKCC	GRCh37	X	66863145	66863145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	53	319	0	ENST00000374690.3:c.1664C>T	p.Pro555Leu	p.P555L	ENST00000374690	NM_000044.3	555	cCa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858517	9858517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	107	595	0	ENST00000330684.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000330684	NM_001134407.1	962	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812260	212812260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	85	313	0	ENST00000342788.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000342788	NM_005235.2	106	Cgt/Tgt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230878	66230878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	27	361	0	ENST00000273854.3:c.2093G>A	p.Gly698Glu	p.G698E	ENST00000273854	NM_004439.5	698	gGa/gAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916248	9916248	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	35	386	1	ENST00000330684.3:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000330684	NM_001134407.1	681	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862896	9862896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	37	596	1	ENST00000330684.3:c.2407G>A	p.Glu803Lys	p.E803K	ENST00000330684	NM_001134407.1	803	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862939	9862939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	72	459	0	ENST00000330684.3:c.2364G>A	p.Met788Ile	p.M788I	ENST00000330684	NM_001134407.1	788	atG/atA																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31387101	31387101	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	93	577	0	ENST00000328111.2:c.1726C>T	p.Arg576Ter	p.R576*	ENST00000328111	NM_006892.3	576	Cga/Tga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900353	3900353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	41	714	0	ENST00000262367.5:c.743C>T	p.Pro248Leu	p.P248L	ENST00000262367	NM_004380.2	248	cCg/cTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858769	9858769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	27	276	0	ENST00000330684.3:c.2632G>A	p.Glu878Lys	p.E878K	ENST00000330684	NM_001134407.1	878	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306677	41306677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	84	731	0	ENST00000373198.4:c.982C>T	p.Arg328Cys	p.R328C	ENST00000373198	NM_133170.3	328	Cgc/Tgc																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732409	74732409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	16	314	0	ENST00000359995.5:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000359995	NM_001195427.1	167	cGa/cAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895656	28895656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	244	522	0	ENST00000282397.4:c.3118G>A	p.Asp1040Asn	p.D1040N	ENST00000282397	NM_002019.4	1040	Gat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	75	411	0	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	13	254	1				ENST00000310581	NM_198253.2																																																																																
PGR	5241	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	24	297	0	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118941	115118941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	18	278	0	ENST00000257566.3:c.400C>T	p.Pro134Ser	p.P134S	ENST00000257566	NM_016569.3	134	Cct/Tct																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325105	123325105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	49	613	0	ENST00000358487.5:c.223G>A	p.Asp75Asn	p.D75N	ENST00000358487	NM_000141.4	75	Gat/Aat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284880	15284880	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	86	666	0	ENST00000263388.2:c.4735G>A	p.Gly1579Ser	p.G1579S	ENST00000263388	NM_000435.2	1579	Ggc/Agc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729613	41729613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	38	501	1	ENST00000242208.4:c.916C>T	p.Arg306Cys	p.R306C	ENST00000242208	NM_002192.2	306	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55219001	55219001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	32	364	0	ENST00000275493.2:c.574C>T	p.Pro192Ser	p.P192S	ENST00000275493	NM_005228.3	192	Cca/Tca																																																																														
TSHR	7253	MSKCC	GRCh37	14	81558939	81558939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	45	444	2	ENST00000298171.2:c.532G>A	p.Glu178Lys	p.E178K	ENST00000298171	NM_000369.2	178	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341914	8341914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	38	507	0	ENST00000356435.5:c.4726G>A	p.Glu1576Lys	p.E1576K	ENST00000356435		1576	Gaa/Aaa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687306	37687306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	43	525	0	ENST00000447079.4:c.4210C>T	p.Arg1404Cys	p.R1404C	ENST00000447079	NM_015083.1	1404	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175118	112175118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	20	217	0	ENST00000257430.4:c.3827C>T	p.Ser1276Leu	p.S1276L	ENST00000257430	NM_000038.5	1276	tCa/tTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308348	15308348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	51	710	0	ENST00000263388.2:c.160C>T	p.Arg54Cys	p.R54C	ENST00000263388	NM_000435.2	54	Cgt/Tgt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295704	212295704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	56	508	0	ENST00000342788.4:c.2609G>A	p.Gly870Glu	p.G870E	ENST00000342788	NM_005235.2	870	gGa/gAa																																																																														
WT1	7490	MSKCC	GRCh37	11	32413577	32413577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	30	378	0	ENST00000332351.3:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000332351	NM_024426.4	458	cGa/cAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817882	3817882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	74	564	0	ENST00000262367.5:c.3089C>T	p.Ser1030Phe	p.S1030F	ENST00000262367	NM_004380.2	1030	tCc/tTc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285851	198285851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	174	463	0	ENST00000335508.6:c.202G>A	p.Asp68Asn	p.D68N	ENST00000335508	NM_012433.2	68	Gat/Aat																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149512361	149512361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	37	615	0	ENST00000261799.4:c.1079C>T	p.Ser360Phe	p.S360F	ENST00000261799	NM_002609.3	360	tCc/tTc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30264375	30264375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	17	252	0	ENST00000322652.5:c.110C>T	p.Ser37Leu	p.S37L	ENST00000322652	NM_015355.2	37	tCg/tTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476382	88476382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	34	482	0	ENST00000360948.2:c.1750G>A	p.Asp584Asn	p.D584N	ENST00000360948	NM_001012338.2	584	Gat/Aat																																																																														
CARD11	84433	MSKCC	GRCh37	7	2977620	2977620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	69	880	0	ENST00000396946.4:c.1064G>A	p.Gly355Glu	p.G355E	ENST00000396946	NM_032415.4	355	gGa/gAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259231	89259231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	70	416	0	ENST00000336596.2:c.375G>A	p.Met125Ile	p.M125I	ENST00000336596	NM_005233.5	125	atG/atA																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78919565	78919565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	30	353	0	ENST00000306801.3:c.3124G>A	p.Asp1042Asn	p.D1042N	ENST00000306801	NM_020761.2	1042	Gac/Aac																																																																														
RAD50	10111	MSKCC	GRCh37	5	131944398	131944398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	46	175	0	ENST00000265335.6:c.2810A>G	p.Asn937Ser	p.N937S	ENST00000265335		937	aAc/aGc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955087	93955087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	30	407	1	ENST00000369303.4:c.2811G>A	p.Met937Ile	p.M937I	ENST00000369303	NM_004440.3	937	atG/atA																																																																														
POLE	5426	MSKCC	GRCh37	12	133233952	133233952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	47	542	0	ENST00000320574.5:c.3442C>T	p.Pro1148Ser	p.P1148S	ENST00000320574	NM_006231.2	1148	Cct/Tct																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016610	12016610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	31	377	1	ENST00000353533.5:c.746G>A	p.Gly249Asp	p.G249D	ENST00000353533	NM_003010.3	249	gGc/gAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42057206	42057206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	109	561	0	ENST00000219905.7:c.7867C>T	p.Leu2623Phe	p.L2623F	ENST00000219905	NM_001164273.1	2623	Ctc/Ttc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248617	212248617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	49	555	0	ENST00000342788.4:c.3650G>A	p.Gly1217Glu	p.G1217E	ENST00000342788	NM_005235.2	1217	gGa/gAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348640	89348640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	75	898	0	ENST00000301030.4:c.4310C>T	p.Pro1437Leu	p.P1437L	ENST00000301030	NM_001256183.1	1437	cCt/cTt																																																																														
SYK	6850	MSKCC	GRCh37	9	93650837	93650837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	18	356	0	ENST00000375746.1:c.1763G>A	p.Gly588Glu	p.G588E	ENST00000375746	NM_001174167.1	588	gGa/gAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133523	55133523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142492533		P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	38	427	1	ENST00000257290.5:c.827C>T	p.Thr276Met	p.T276M	ENST00000257290	NM_006206.4	276	aCg/aTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609861	117609861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	100	719	0	ENST00000368508.3:c.6838G>A	p.Glu2280Lys	p.E2280K	ENST00000368508	NM_002944.2	2280	Gaa/Aaa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52719286	52719286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	55	578	1	ENST00000322088.6:c.952C>T	p.Arg318Trp	p.R318W	ENST00000322088	NM_014225.5	318	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	66	422	0	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																														
AKT1	207	MSKCC	GRCh37	14	105242063	105242063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	50	744	0	ENST00000349310.3:c.361C>T	p.Arg121Trp	p.R121W	ENST00000349310	NM_001014432.1	121	Cgg/Tgg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573933	18573933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	28	349	0	ENST00000266497.5:c.2251G>A	p.Asp751Asn	p.D751N	ENST00000266497		751	Gat/Aat																																																																														
RB1	5925	MSKCC	GRCh37	13	49027169	49027169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	39	444	0	ENST00000267163.4:c.1736G>A	p.Arg579Gln	p.R579Q	ENST00000267163	NM_000321.2	579	cGa/cAa																																																																														
FYN	2534	MSKCC	GRCh37	6	112041017	112041017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	24	364	2	ENST00000368678.4:c.238G>A	p.Gly80Arg	p.G80R	ENST00000368678		80	Gga/Aga																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	151	705	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432368	432368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	44	134	0	ENST00000399788.2:c.2155C>T	p.Arg719Cys	p.R719C	ENST00000399788	NM_001042603.1	719	Cgc/Tgc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544088	18544088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	19	321	0	ENST00000266497.5:c.1905G>A	p.Met635Ile	p.M635I	ENST00000266497		635	atG/atA																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865537	57865537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	40	718	0	ENST00000228682.2:c.3014G>A	p.Gly1005Glu	p.G1005E	ENST00000228682	NM_005269.2	1005	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94124422	94124422	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	40	374	0	ENST00000369303.4:c.161G>A	p.Gly54Glu	p.G54E	ENST00000369303	NM_004440.3	54	gGg/gAg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640985	3640985	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147492092		P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	121	905	0	ENST00000294008.3:c.2654C>T	p.Pro885Leu	p.P885L	ENST00000294008	NM_032444.2	885	cCg/cTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106164779	106164779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	34	411	0	ENST00000380013.4:c.3647G>A	p.Arg1216Gln	p.R1216Q	ENST00000380013	NM_001127208.2	1216	cGa/cAa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163804	72163804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	154	416	1	ENST00000357731.5:c.554G>A	p.Gly185Glu	p.G185E	ENST00000357731	NM_173808.2	185	gGa/gAa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806564	1806564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	72	550	0	ENST00000260795.2:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000260795		427	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342551	118342551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	36	185	0	ENST00000534358.1:c.677C>T	p.Pro226Leu	p.P226L	ENST00000534358	NM_005933.3	226	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577540	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	80	684	1	ENST00000269305.4:c.741_742delinsTT	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	247	aaCCgg/aaTTgg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180050958	180050958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	45	760	1	ENST00000261937.6:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000261937	NM_182925.4	509	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332632	65332632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	27	347	1	ENST00000342505.4:c.907C>T	p.His303Tyr	p.H303Y	ENST00000342505	NM_002227.2	303	Cat/Tat																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182201	99182201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	183	496	0	ENST00000074304.5:c.2266G>A	p.Asp756Asn	p.D756N	ENST00000074304	NM_001134224.1	756	Gac/Aac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120366	94120366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	47	280	0	ENST00000369303.4:c.685G>A	p.Glu229Lys	p.E229K	ENST00000369303	NM_004440.3	229	Gag/Aag																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460345	149460345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	28	420	0	ENST00000286301.3:c.292C>T	p.His98Tyr	p.H98Y	ENST00000286301	NM_005211.3	98	Cac/Tac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827885	40827885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	67	435	0	ENST00000373198.4:c.2543G>A	p.Gly848Glu	p.G848E	ENST00000373198	NM_133170.3	848	gGa/gAa																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588211	69588211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	31	589	0	ENST00000168712.1:c.487C>T	p.Pro163Ser	p.P163S	ENST00000168712	NM_002007.2	163	Ccc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40864899	40864899	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	71	342	0	ENST00000373198.4:c.2370-1G>A		p.X790_splice	ENST00000373198	NM_133170.3	790																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741804	17741804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	39	264	0	ENST00000250003.3:c.475G>A	p.Gly159Ser	p.G159S	ENST00000250003	NM_002478.4	159	Ggc/Agc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449496	149449496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	50	624	0	ENST00000286301.3:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000286301	NM_005211.3	484	Gag/Aag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639422	3639422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	33	696	0	ENST00000294008.3:c.4217C>T	p.Ser1406Phe	p.S1406F	ENST00000294008	NM_032444.2	1406	tCc/tTc																																																																														
AXL	558	MSKCC	GRCh37	19	41763500	41763500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	35	518	1	ENST00000301178.4:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000301178	NM_021913.4	767	Cgc/Tgc																																																																														
ALK	238	MSKCC	GRCh37	2	29543689	29543689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	100	599	0	ENST00000389048.3:c.1474G>A	p.Gly492Ser	p.G492S	ENST00000389048	NM_004304.4	492	Ggc/Agc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435190	18435190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	19	288	0	ENST00000266497.5:c.175G>A	p.Asp59Asn	p.D59N	ENST00000266497		59	Gat/Aat																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519758	176519758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	26	705	0	ENST00000292408.4:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000292408	NM_213647.1	344	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	72	288	0				ENST00000310581	NM_198253.2																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118343259	118343259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	22	352	0	ENST00000534358.1:c.1385C>T	p.Ser462Leu	p.S462L	ENST00000534358	NM_005933.3	462	tCa/tTa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11175467	11175467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	89	510	0	ENST00000361445.4:c.7075G>A	p.Gly2359Arg	p.G2359R	ENST00000361445	NM_004958.3	2359	Ggg/Agg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099971	27099972	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	34	625	2	ENST00000324856.7:c.3850_3851delinsTT	p.Pro1284Phe	p.P1284F	ENST00000324856	NM_006015.4	1284	CCt/TTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106184	27106184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	85	475	0	ENST00000324856.7:c.5795C>T	p.Ala1932Val	p.A1932V	ENST00000324856	NM_006015.4	1932	gCc/gTc																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51436146	51436147	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	21	309	0	ENST00000262662.1:c.106_107delinsAA	p.Gly36Lys	p.G36K	ENST00000262662		36	GGa/AAa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400815	72400815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	71	389	0	ENST00000357731.5:c.356C>T	p.Ser119Phe	p.S119F	ENST00000357731	NM_173808.2	119	tCt/tTt																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165986	118165986	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	51	413	1	ENST00000369448.3:c.496G>T	p.Glu166Ter	p.E166*	ENST00000369448	NM_017709.3	166	Gag/Tag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120469126	120469126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	58	334	0	ENST00000256646.2:c.4001C>T	p.Pro1334Leu	p.P1334L	ENST00000256646	NM_024408.3	1334	cCc/cTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120491097	120491097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	51	456	0	ENST00000256646.2:c.2692G>A	p.Glu898Lys	p.E898K	ENST00000256646	NM_024408.3	898	Gaa/Aaa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120491661	120491661	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	29	297	0	ENST00000256646.2:c.2568T>G	p.Ser856Arg	p.S856R	ENST00000256646	NM_024408.3	856	agT/agG																																																																														
FH	2271	MSKCC	GRCh37	1	241665761	241665761	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	86	354	0	ENST00000366560.3:c.1218T>G	p.Asn406Lys	p.N406K	ENST00000366560	NM_000143.3	406	aaT/aaG																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100718	8100718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	28	595	0	ENST00000346208.3:c.692C>T	p.Ser231Phe	p.S231F	ENST00000346208		231	tCc/tTc																																																																														
RET	5979	MSKCC	GRCh37	10	43609027	43609027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	28	506	1	ENST00000355710.3:c.1783G>A	p.Glu595Lys	p.E595K	ENST00000355710	NM_020975.4	595	Gag/Aag																																																																														
RET	5979	MSKCC	GRCh37	10	43610140	43610140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	40	725	0	ENST00000355710.3:c.2092G>A	p.Asp698Asn	p.D698N	ENST00000355710	NM_020975.4	698	Gac/Aac																																																																														
TET1	80312	MSKCC	GRCh37	10	70404783	70404783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	33	452	0	ENST00000373644.4:c.2297T>C	p.Leu766Ser	p.L766S	ENST00000373644	NM_030625.2	766	tTa/tCa																																																																														
TET1	80312	MSKCC	GRCh37	10	70446134	70446134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	35	481	0	ENST00000373644.4:c.5074G>A	p.Asp1692Asn	p.D1692N	ENST00000373644	NM_030625.2	1692	Gat/Aat																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112769106	112769106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	51	466	0	ENST00000369452.4:c.1385C>T	p.Ser462Phe	p.S462F	ENST00000369452	NM_007373.3	462	tCc/tTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239498	123239498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	47	777	0	ENST00000358487.5:c.2339C>T	p.Ser780Leu	p.S780L	ENST00000358487	NM_000141.4	780	tCa/tTa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123353226	123353226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	22	359	1	ENST00000358487.5:c.106G>A	p.Glu36Lys	p.E36K	ENST00000358487	NM_000141.4	36	Gaa/Aaa																																																																														
WT1	7490	MSKCC	GRCh37	11	32417850	32417850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	60	532	0	ENST00000332351.3:c.1202G>A	p.Arg401Lys	p.R401K	ENST00000332351	NM_024426.4	401	aGa/aAa																																																																														
PGR	5241	MSKCC	GRCh37	11	100996828	100996828	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	113	606	0	ENST00000325455.5:c.1699T>G	p.Cys567Gly	p.C567G	ENST00000325455	NM_001202474.3	567	Tgt/Ggt																																																																														
ATM	472	MSKCC	GRCh37	11	108151774	108151774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	139	366	0	ENST00000278616.4:c.3455C>T	p.Ser1152Phe	p.S1152F	ENST00000278616	NM_000051.3	1152	tCt/tTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373218	118373218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	34	447	0	ENST00000534358.1:c.6611C>T	p.Ser2204Leu	p.S2204L	ENST00000534358	NM_005933.3	2204	tCa/tTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374480	118374480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	61	418	0	ENST00000534358.1:c.7873C>T	p.Arg2625Cys	p.R2625C	ENST00000534358	NM_005933.3	2625	Cgt/Tgt																																																																														
CBL	867	MSKCC	GRCh37	11	119103402	119103402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	30	306	0	ENST00000264033.4:c.440C>T	p.Pro147Leu	p.P147L	ENST00000264033	NM_005188.3	147	cCt/cTt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	427563	427563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	135	479	0	ENST00000399788.2:c.2606C>T	p.Pro869Leu	p.P869L	ENST00000399788	NM_001042603.1	869	cCa/cTa																																																																														
CCND2	894	MSKCC	GRCh37	12	4383363	4383363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	38	525	0	ENST00000261254.3:c.157C>T	p.Pro53Ser	p.P53S	ENST00000261254	NM_001759.3	53	Ccc/Tcc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435419	18435419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	26	296	0	ENST00000266497.5:c.404G>A	p.Gly135Asp	p.G135D	ENST00000266497		135	gGt/gAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435666	18435666	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	24	216	0	ENST00000266497.5:c.651G>A	p.Trp217Ter	p.W217*	ENST00000266497		217	tgG/tgA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420265	49420266	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	88	632	1	ENST00000301067.7:c.15483_15484delinsAA	p.Val5162Met	p.V5162M	ENST00000301067	NM_003482.3	5161	gaGGtg/gaAAtg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433916	49433916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	40	760	1	ENST00000301067.7:c.7637C>T	p.Ser2546Phe	p.S2546F	ENST00000301067	NM_003482.3	2546	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445041	49445041	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	80	472	2	ENST00000301067.7:c.2425C>T	p.Gln809Ter	p.Q809*	ENST00000301067	NM_003482.3	809	Cag/Tag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864723	57864723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	46	721	0	ENST00000228682.2:c.2200G>A	p.Gly734Arg	p.G734R	ENST00000228682	NM_005269.2	734	Gga/Aga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864805	57864805	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	41	651	0	ENST00000228682.2:c.2282A>C	p.Tyr761Ser	p.Y761S	ENST00000228682	NM_005269.2	761	tAt/tCt																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536908	120536908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	52	649	2	ENST00000229340.5:c.278C>T	p.Ala93Val	p.A93V	ENST00000229340	NM_006861.6	93	gCc/gTc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120795644	120795644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	29	411	0	ENST00000257552.2:c.509A>G	p.His170Arg	p.H170R	ENST00000257552	NM_002442.3	170	cAt/cGt																																																																														
POLE	5426	MSKCC	GRCh37	12	133225909	133225909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	44	649	0	ENST00000320574.5:c.3988C>T	p.Pro1330Ser	p.P1330S	ENST00000320574	NM_006231.2	1330	Ccg/Tcg																																																																														
POLE	5426	MSKCC	GRCh37	12	133254169	133254169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	40	466	0	ENST00000320574.5:c.715C>T	p.His239Tyr	p.H239Y	ENST00000320574	NM_006231.2	239	Cac/Tac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608322	28608322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	47	627	0	ENST00000241453.7:c.1734G>A	p.Met578Ile	p.M578I	ENST00000241453	NM_004119.2	578	atG/atA																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622418	28622418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	278	437	0	ENST00000241453.7:c.1199G>A	p.Gly400Glu	p.G400E	ENST00000241453	NM_004119.2	400	gGa/gAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28883012	28883012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	50	539	0	ENST00000282397.4:c.3688G>A	p.Glu1230Lys	p.E1230K	ENST00000282397	NM_002019.4	1230	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041745	29041745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	249	407	0	ENST00000282397.4:c.74C>T	p.Ser25Leu	p.S25L	ENST00000282397	NM_002019.4	25	tCa/tTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912192	32912192	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	86	605	0	ENST00000380152.3:c.3700C>G	p.Leu1234Val	p.L1234V	ENST00000380152		1234	Ctg/Gtg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913741	32913742	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	42	376	0	ENST00000380152.3:c.5249_5250delinsTT	p.Ser1750Phe	p.S1750F	ENST00000380152		1750	tCC/tTT																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504501	103504501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	28	287	0	ENST00000355739.4:c.122G>A	p.Gly41Glu	p.G41E	ENST00000355739	NM_000123.3	41	gGa/gAa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986649	36986650	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TA			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	10	74	0	ENST00000354822.5:c.1039_1040delinsTA	p.Pro347Ter	p.P347*	ENST00000354822	NM_001079668.2	347	CCg/TAg																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675082	40675082	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	51	621	0	ENST00000249776.8:c.46A>C	p.Thr16Pro	p.T16P	ENST00000249776	NM_033286.3	16	Aca/Cca																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675131	40675131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	54	661	1	ENST00000249776.8:c.95G>A	p.Arg32Gln	p.R32Q	ENST00000249776	NM_033286.3	32	cGg/cAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678334	88678334	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	47	624	0	ENST00000360948.2:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000360948	NM_001012338.2	401	cCa/cTa																																																																														
BLM	641	MSKCC	GRCh37	15	91303978	91303978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	61	614	0	ENST00000355112.3:c.1375C>T	p.Pro459Ser	p.P459S	ENST00000355112	NM_000057.2	459	Ccc/Tcc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2131785	2131785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	30	550	0	ENST00000219476.3:c.3800C>A	p.Pro1267His	p.P1267H	ENST00000219476	NM_000548.3	1267	cCt/cAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779316	3779316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	34	608	1	ENST00000262367.5:c.5732C>T	p.Pro1911Leu	p.P1911L	ENST00000262367	NM_004380.2	1911	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857184	9857184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	56	479	0	ENST00000330684.3:c.4217G>T	p.Arg1406Met	p.R1406M	ENST00000330684	NM_001134407.1	1406	aGg/aTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862818	9862818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	78	576	0	ENST00000330684.3:c.2485G>A	p.Ala829Thr	p.A829T	ENST00000330684	NM_001134407.1	829	Gcc/Acc																																																																														
CDH1	999	MSKCC	GRCh37	16	68844170	68844170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	90	620	0	ENST00000261769.5:c.758C>T	p.Thr253Ile	p.T253I	ENST00000261769	NM_004360.3	253	aCc/aTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993825	72993825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	44	454	0	ENST00000268489.5:c.220C>T	p.Pro74Ser	p.P74S	ENST00000268489	NM_006885.3	74	Ccc/Tcc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81954867	81954867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	101	647	1	ENST00000359376.3:c.2300C>T	p.Pro767Leu	p.P767L	ENST00000359376	NM_002661.3	767	cCg/cTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347140	89347140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	20	445	0	ENST00000301030.4:c.5810G>A	p.Gly1937Asp	p.G1937D	ENST00000301030	NM_001256183.1	1937	gGt/gAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348932	89348932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	107	804	1	ENST00000301030.4:c.4018C>T	p.Leu1340Phe	p.L1340F	ENST00000301030	NM_001256183.1	1340	Ctc/Ttc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349759	89349759	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	138	865	0	ENST00000301030.4:c.3191A>T	p.Glu1064Val	p.E1064V	ENST00000301030	NM_001256183.1	1064	gAa/gTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349855	89349855	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	145	1014	0	ENST00000301030.4:c.3095C>T	p.Ser1032Phe	p.S1032F	ENST00000301030	NM_001256183.1	1032	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577548	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	106	660	1	ENST00000269305.4:c.733_734delinsTA	p.Gly245Tyr	p.G245Y	ENST00000269305	NM_001126112.2	245	GGc/TAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004911	16004911	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	59	630	0	ENST00000268712.3:c.2343G>C	p.Glu781Asp	p.E781D	ENST00000268712	NM_006311.3	781	gaG/gaC																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16052790	16052790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	45	461	0	ENST00000268712.3:c.884G>A	p.Arg295Lys	p.R295K	ENST00000268712	NM_006311.3	295	aGa/aAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492752	56492752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	189	609	0	ENST00000407977.2:c.187C>T	p.Leu63Phe	p.L63F	ENST00000407977		63	Ctc/Ttc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56414990	56414990	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	63	552	0	ENST00000348428.3:c.2391T>A	p.His797Gln	p.H797Q	ENST00000348428	NM_006785.3	797	caT/caA																																																																														
STK11	6794	MSKCC	GRCh37	19	1223116	1223117	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	80	599	0	ENST00000326873.7:c.1053_1054delinsAA	p.Asp352Asn	p.D352N	ENST00000326873	NM_000455.4	351	gaGGac/gaAAac																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226890	2226891	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	31	152	0	ENST00000398665.3:c.4370_4371delinsTT	p.Ser1457Phe	p.S1457F	ENST00000398665	NM_032482.2	1457	tCC/tTT																																																																														
INSR	3643	MSKCC	GRCh37	19	7122742	7122742	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	41	693	1	ENST00000302850.5:c.3412C>T	p.Gln1138Ter	p.Q1138*	ENST00000302850	NM_000208.2	1138	Cag/Tag																																																																														
INSR	3643	MSKCC	GRCh37	19	7122909	7122909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	79	679	0	ENST00000302850.5:c.3350C>T	p.Ser1117Phe	p.S1117F	ENST00000302850	NM_000208.2	1117	tCt/tTt																																																																														
INSR	3643	MSKCC	GRCh37	19	7125332	7125332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	99	585	0	ENST00000302850.5:c.3220G>A	p.Glu1074Lys	p.E1074K	ENST00000302850	NM_000208.2	1074	Gag/Aag																																																																														
INSR	3643	MSKCC	GRCh37	19	7184479	7184479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	45	648	0	ENST00000302850.5:c.822C>A	p.His274Gln	p.H274Q	ENST00000302850	NM_000208.2	274	caC/caA																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250462	10250462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	34	490	0	ENST00000340748.4:c.3790C>T	p.Leu1264Phe	p.L1264F	ENST00000340748		1264	Ctc/Ttc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250770	10250770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	38	676	2	ENST00000340748.4:c.3710C>T	p.Ser1237Leu	p.S1237L	ENST00000340748		1237	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152158	11152158	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	71	483	1	ENST00000344626.4:c.4346A>T	p.Glu1449Val	p.E1449V	ENST00000344626	NM_003072.3	1449	gAg/gTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272119	15272119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	30	478	0	ENST00000263388.2:c.6320C>T	p.Ser2107Phe	p.S2107F	ENST00000263388	NM_000435.2	2107	tCc/tTc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945921	17945921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	69	795	0	ENST00000458235.1:c.2018G>A	p.Gly673Glu	p.G673E	ENST00000458235	NM_000215.3	673	gGg/gAg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950352	17950352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	44	725	1	ENST00000458235.1:c.1375G>A	p.Asp459Asn	p.D459N	ENST00000458235	NM_000215.3	459	Gat/Aat																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273029	18273029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	43	672	0	ENST00000222254.8:c.919C>T	p.Pro307Ser	p.P307S	ENST00000222254	NM_005027.3	307	Ccc/Tcc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256725	19256725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	30	457	1	ENST00000162023.5:c.988C>T	p.Pro330Ser	p.P330S	ENST00000162023		330	Ccc/Tcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213615	36213615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	90	807	1	ENST00000222270.7:c.2717C>T	p.Thr906Ile	p.T906I	ENST00000222270	NM_014727.1	906	aCa/aTa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867325	45867325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	45	623	2	ENST00000391945.4:c.868G>A	p.Glu290Lys	p.E290K	ENST00000391945	NM_000400.3	290	Gag/Aag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905488	50905489	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	46	830	1	ENST00000440232.2:c.616_617delinsTT	p.Pro206Phe	p.P206F	ENST00000440232	NM_002691.3	206	CCc/TTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085827	16085827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	86	433	0	ENST00000281043.3:c.1003C>T	p.Pro335Ser	p.P335S	ENST00000281043	NM_005378.4	335	Ccc/Tcc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972744	25972744	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	34	459	0	ENST00000435504.4:c.1681C>T	p.Gln561Ter	p.Q561*	ENST00000435504		561	Cag/Tag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972989	25972989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	31	399	0	ENST00000435504.4:c.1436C>T	p.Pro479Leu	p.P479L	ENST00000435504		479	cCc/cTc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26029195	26029195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	72	333	0	ENST00000435504.4:c.155C>T	p.Pro52Leu	p.P52L	ENST00000435504		52	cCt/cTt																																																																														
ALK	238	MSKCC	GRCh37	2	29519825	29519825	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	49	604	0	ENST00000389048.3:c.1746G>A	p.Trp582Ter	p.W582*	ENST00000389048	NM_004304.4	582	tgG/tgA																																																																														
ALK	238	MSKCC	GRCh37	2	29940473	29940473	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	23	345	0	ENST00000389048.3:c.758T>A	p.Phe253Tyr	p.F253Y	ENST00000389048	NM_004304.4	253	tTc/tAc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248692	212248692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	42	504	0	ENST00000342788.4:c.3575C>T	p.Ser1192Phe	p.S1192F	ENST00000342788	NM_005235.2	1192	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251634	212251634	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3748961		P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	38	526	0	ENST00000342788.4:c.3425G>A	p.Arg1142Gln	p.R1142Q	ENST00000342788	NM_005235.2	1142	cGa/cAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285336	212285336	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	29	392	0	ENST00000342788.4:c.2965G>A	p.Gly989Ser	p.G989S	ENST00000342788	NM_005235.2	989	Ggt/Agt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426711	212426711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	38	543	0	ENST00000342788.4:c.2404G>A	p.Gly802Ser	p.G802S	ENST00000342788	NM_005235.2	802	Ggc/Agc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794494	242794494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	45	643	0	ENST00000334409.5:c.448G>A	p.Glu150Lys	p.E150K	ENST00000334409	NM_005018.2	150	Gaa/Aaa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525083	9525083	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	59	429	0	ENST00000353224.5:c.1802A>T	p.Lys601Ile	p.K601I	ENST00000353224	NM_177990.2	601	aAa/aTa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561131	9561131	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	33	387	0	ENST00000353224.5:c.651G>A	p.Trp217Ter	p.W217*	ENST00000353224	NM_177990.2	217	tgG/tgA																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46270974	46270974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	92	496	0	ENST00000371998.3:c.3098C>T	p.Ser1033Phe	p.S1033F	ENST00000371998		1033	tCc/tTc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321451	62321451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	36	608	0	ENST00000508582.2:c.2225C>T	p.Ala742Val	p.A742V	ENST00000508582		742	gCc/gTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39764345	39764345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	82	512	1	ENST00000288319.7:c.767G>A	p.Arg256Lys	p.R256K	ENST00000288319	NM_182918.3	256	aGg/aAg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655229	45655229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	73	594	0	ENST00000407780.3:c.623C>A	p.Thr208Asn	p.T208N	ENST00000407780	NM_001283052.1	208	aCc/aAc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12422958	12422958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	47	593	0	ENST00000287820.6:c.448C>T	p.His150Tyr	p.H150Y	ENST00000287820	NM_015869.4	150	Cac/Tac																																																																														
RHOA	387	MSKCC	GRCh37	3	49413010	49413011	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	41	602	2	ENST00000418115.1:c.12_13delinsTT	p.Arg5Trp	p.R5W	ENST00000418115	NM_001664.2	4	atCCgg/atTTgg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960074	134960074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	41	594	0	ENST00000398015.3:c.2431G>A	p.Gly811Arg	p.G811R	ENST00000398015	NM_004441.4	811	Ggg/Agg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156486	55156486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	24	366	0	ENST00000257290.5:c.2887G>A	p.Glu963Lys	p.E963K	ENST00000257290	NM_006206.4	963	Gaa/Aaa																																																																														
KIT	3815	MSKCC	GRCh37	4	55564452	55564452	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	36	352	0	ENST00000288135.5:c.340C>T	p.Pro114Ser	p.P114S	ENST00000288135	NM_000222.2	114	Cct/Tct																																																																														
KDR	3791	MSKCC	GRCh37	4	55981566	55981566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	34	283	0	ENST00000263923.4:c.371C>T	p.Pro124Leu	p.P124L	ENST00000263923	NM_002253.2	124	cCa/cTa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157704	106157704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	24	237	0	ENST00000380013.4:c.2605C>T	p.Pro869Ser	p.P869S	ENST00000380013	NM_001127208.2	869	Cca/Tca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187516867	187516867	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	32	429	0	ENST00000441802.2:c.13114C>T	p.Gln4372Ter	p.Q4372*	ENST00000441802	NM_005245.3	4372	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539870	187539870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	114	419	0	ENST00000441802.2:c.7870G>T	p.Asp2624Tyr	p.D2624Y	ENST00000441802	NM_005245.3	2624	Gat/Tat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629457	187629457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	90	565	0	ENST00000441802.2:c.1525C>T	p.Pro509Ser	p.P509S	ENST00000441802	NM_005245.3	509	Ccg/Tcg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56176998	56176999	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	93	417	1	ENST00000399503.3:c.2268_2269delinsTT	p.Arg757Cys	p.R757C	ENST00000399503	NM_005921.1	756	ggCCgc/ggTTgc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755578	57755579	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	25	493	0	ENST00000274289.3:c.208_209delinsAT	p.Ser70Met	p.S70M	ENST00000274289	NM_006622.3	70	TCg/ATg																																																																														
APC	324	MSKCC	GRCh37	5	112175984	112175984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	23	228	0	ENST00000257430.4:c.4693G>A	p.Asp1565Asn	p.D1565N	ENST00000257430	NM_000038.5	1565	Gat/Aat																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520175	176520176	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	135	858	3	ENST00000292408.4:c.1094_1095delinsTT	p.Ala365Val	p.A365V	ENST00000292408	NM_213647.1	365	gCC/gTT																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047646	180047646	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	82	544	1	ENST00000261937.6:c.2369G>A	p.Trp790Ter	p.W790*	ENST00000261937	NM_182925.4	790	tGg/tAg																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271209	26271209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	52	330	0	ENST00000305910.3:c.404G>A	p.Arg135Lys	p.R135K	ENST00000305910	NM_003534.2	135	aGa/aAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181503	32181503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	47	621	0	ENST00000375023.3:c.2282G>A	p.Gly761Glu	p.G761E	ENST00000375023	NM_004557.3	761	gGg/gAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181560	32181560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	91	707	0	ENST00000375023.3:c.2225G>A	p.Gly742Asp	p.G742D	ENST00000375023	NM_004557.3	742	gGc/gAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185835	32185835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	115	659	0	ENST00000375023.3:c.1561C>T	p.Pro521Ser	p.P521S	ENST00000375023	NM_004557.3	521	Ccc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956664	93956664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	39	406	0	ENST00000369303.4:c.2572C>T	p.Pro858Ser	p.P858S	ENST00000369303	NM_004440.3	858	Ccc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967856	93967856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	51	506	0	ENST00000369303.4:c.2071C>T	p.His691Tyr	p.H691Y	ENST00000369303	NM_004440.3	691	Cac/Tac																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536230	106536230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	44	448	0	ENST00000369096.4:c.197C>T	p.Pro66Leu	p.P66L	ENST00000369096	NM_001198.3	66	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631376	117631376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	40	503	0	ENST00000368508.3:c.6302G>A	p.Gly2101Glu	p.G2101E	ENST00000368508	NM_002944.2	2101	gGa/gAa																																																																														
PARK2	5071	MSKCC	GRCh37	6	162622230	162622230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	75	483	0	ENST00000366898.1:c.467G>A	p.Arg156Lys	p.R156K	ENST00000366898	NM_004562.2	156	aGa/aAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954900	2954900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	31	621	0	ENST00000396946.4:c.2810C>T	p.Ala937Val	p.A937V	ENST00000396946	NM_032415.4	937	gCc/gTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962794	2962794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	44	570	1	ENST00000396946.4:c.2114G>A	p.Gly705Asp	p.G705D	ENST00000396946	NM_032415.4	705	gGc/gAc																																																																														
MET	4233	MSKCC	GRCh37	7	116371827	116371827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	46	501	0	ENST00000397752.3:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000397752	NM_000245.2	436	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116403212	116403212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	375	541	0	ENST00000397752.3:c.2473G>A	p.Gly825Arg	p.G825R	ENST00000397752	NM_000245.2	825	Ggg/Agg																																																																														
MET	4233	MSKCC	GRCh37	7	116409810	116409810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	32	298	0	ENST00000397752.3:c.2695G>A	p.Asp899Asn	p.D899N	ENST00000397752	NM_000245.2	899	Gac/Aac																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29195907	29195907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	72	767	0	ENST00000240100.2:c.691G>A	p.Asp231Asn	p.D231N	ENST00000240100	NM_001394.6	231	Gac/Aac																																																																														
LYN	4067	MSKCC	GRCh37	8	56860239	56860239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	44	510	0	ENST00000519728.1:c.241G>A	p.Asp81Asn	p.D81N	ENST00000519728	NM_002350.3	81	Gac/Aac																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965451	68965451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	96	661	0	ENST00000288368.4:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000288368	NM_024870.2	355	Gct/Act																																																																														
CD274	29126	MSKCC	GRCh37	9	5463052	5463052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	34	251	0	ENST00000381577.3:c.613G>A	p.Glu205Lys	p.E205K	ENST00000381577	NM_014143.3	205	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400191	139400191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	23	678	0	ENST00000277541.6:c.4157C>T	p.Pro1386Leu	p.P1386L	ENST00000277541	NM_017617.3	1386	cCg/cTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400218	139400218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	44	686	0	ENST00000277541.6:c.4130C>T	p.Pro1377Leu	p.P1377L	ENST00000277541	NM_017617.3	1377	cCc/cTc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929343	44929343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	131	329	0	ENST00000377967.4:c.2443G>T	p.Val815Phe	p.V815F	ENST00000377967	NM_021140.2	815	Gtt/Ttt																																																																														
AR	367	MSKCC	GRCh37	X	66766116	66766117	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	139	237	0	ENST00000374690.3:c.1128_1129delinsTT	p.Pro377Ser	p.P377S	ENST00000374690	NM_000044.3	376	ccCCct/ccTTct																																																																														
BTK	695	MSKCC	GRCh37	X	100617183	100617183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	85	300	0	ENST00000308731.7:c.566C>T	p.Pro189Leu	p.P189L	ENST00000308731	NM_000061.2	189	cCc/cTc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200071	128200071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	49	878	1	ENST00000341105.2:c.1234G>A	p.Glu412Lys	p.E412K	ENST00000341105	NM_032638.4	412	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	251	499	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423632	88423632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	83	370	1	ENST00000360948.2:c.2203C>T	p.Arg735Cys	p.R735C	ENST00000360948	NM_001012338.2	735	Cgc/Tgc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6042238	6042238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116373169		P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	110	440	1	ENST00000265849.7:c.383C>T	p.Ser128Leu	p.S128L	ENST00000265849	NM_000535.5	128	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11107185	11107185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	98	441	0	ENST00000344626.4:c.1777G>A	p.Glu593Lys	p.E593K	ENST00000344626	NM_003072.3	593	Gaa/Aaa																																																																														
CIC	23152	MSKCC	GRCh37	19	42798881	42798881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	124	613	0	ENST00000575354.2:c.4453C>T	p.Pro1485Ser	p.P1485S	ENST00000575354	NM_015125.3	1485	Ccg/Tcg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71102882	71102882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	72	314	0	ENST00000318789.4:c.325C>T	p.Pro109Ser	p.P109S	ENST00000318789	NM_032682.5	109	Ccc/Tcc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256812	19256812	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200233107		P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	70	263	0	ENST00000162023.5:c.901G>A	p.Glu301Lys	p.E301K	ENST00000162023		301	Gag/Aag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911104	32911104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	80	331	0	ENST00000380152.3:c.2612C>T	p.Ser871Leu	p.S871L	ENST00000380152		871	tCa/tTa																																																																														
INSR	3643	MSKCC	GRCh37	19	7184559	7184559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	95	394	0	ENST00000302850.5:c.742G>A	p.Asp248Asn	p.D248N	ENST00000302850	NM_000208.2	248	Gac/Aac																																																																														
CBL	867	MSKCC	GRCh37	11	119158561	119158561	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	115	356	0	ENST00000264033.4:c.1942-1G>A		p.X648_splice	ENST00000264033	NM_005188.3	648																																																																															
PREX2	80243	MSKCC	GRCh37	8	69033198	69033198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	255	433	0	ENST00000288368.4:c.3638G>A	p.Arg1213Lys	p.R1213K	ENST00000288368	NM_024870.2	1213	aGg/aAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878458	151878458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	106	572	0	ENST00000262189.6:c.6487C>T	p.Pro2163Ser	p.P2163S	ENST00000262189	NM_170606.2	2163	Cct/Tct																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78882680	78882680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	112	547	0	ENST00000306801.3:c.2471C>T	p.Pro824Leu	p.P824L	ENST00000306801	NM_020761.2	824	cCa/cTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350486	89350486	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	103	841	1	ENST00000301030.4:c.2464C>T	p.Gln822Ter	p.Q822*	ENST00000301030	NM_001256183.1	822	Cag/Tag																																																																														
TET2	54790	MSKCC	GRCh37	4	106157359	106157359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	78	356	0	ENST00000380013.4:c.2260G>A	p.Glu754Lys	p.E754K	ENST00000380013	NM_001127208.2	754	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	74	344	1				ENST00000310581	NM_198253.2																																																																																
ETV6	2120	MSKCC	GRCh37	12	12022646	12022646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	88	421	0	ENST00000396373.4:c.752C>T	p.Ser251Phe	p.S251F	ENST00000396373	NM_001987.4	251	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087895	27087895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	123	533	0	ENST00000324856.7:c.2182C>T	p.Pro728Ser	p.P728S	ENST00000324856	NM_006015.4	728	Cca/Tca																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36931983	36931984	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	105	410	2	ENST00000361632.4:c.2485_2486delinsAA	p.Gly829Lys	p.G829K	ENST00000361632		829	GGg/AAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685268	89685273	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGGTTT	AGGTTT	-			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	44	250	0	ENST00000371953.3:c.165-2_168del		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118374108	118374108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	108	402	0	ENST00000534358.1:c.7501C>T	p.Pro2501Ser	p.P2501S	ENST00000534358	NM_005933.3	2501	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49419968	49419968	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	98	382	0	ENST00000301067.7:c.15781C>T	p.Gln5261Ter	p.Q5261*	ENST00000301067	NM_003482.3	5261	Cag/Tag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557827	21557827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	124	634	1	ENST00000382592.4:c.2018C>T	p.Thr673Ile	p.T673I	ENST00000382592	NM_014572.2	673	aCc/aTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42058510	42058510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	94	341	0	ENST00000219905.7:c.8230C>T	p.Pro2744Ser	p.P2744S	ENST00000219905	NM_001164273.1	2744	Cct/Tct																																																																														
BLM	641	MSKCC	GRCh37	15	91333904	91333904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	108	456	0	ENST00000355112.3:c.2849G>A	p.Gly950Glu	p.G950E	ENST00000355112	NM_000057.2	950	gGa/gAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828465	72828465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	95	560	0	ENST00000268489.5:c.8116C>T	p.Pro2706Ser	p.P2706S	ENST00000268489	NM_006885.3	2706	Cca/Tca																																																																														
STAT3	6774	MSKCC	GRCh37	17	40485976	40485976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	124	524	2	ENST00000264657.5:c.889C>T	p.Pro297Ser	p.P297S	ENST00000264657	NM_139276.2	297	Ccc/Tcc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78882679	78882680	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	112	546	1	ENST00000306801.3:c.2470_2471delinsTT	p.Pro824Leu	p.P824L	ENST00000306801	NM_020761.2	824	CCa/TTa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211760	36211760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	105	585	0	ENST00000222270.7:c.1511G>C	p.Gly504Ala	p.G504A	ENST00000222270	NM_014727.1	504	gGa/gCa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905727	50905728	+	missense_variant	Missense_Mutation	DNP	GA	GA	AG			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	123	625	1	ENST00000440232.2:c.775_776delinsAG	p.Asp259Ser	p.D259S	ENST00000440232	NM_002691.3	259	GAc/AGc																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30253866	30253867	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	102	422	0	ENST00000307677.4:c.587_588delinsAA	p.Gly196Glu	p.G196E	ENST00000307677	NM_138578.1	196	gGG/gAA																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022494	31022494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	55	289	0	ENST00000375687.4:c.1979G>A	p.Gly660Asp	p.G660D	ENST00000375687	NM_015338.5	660	gGc/gAc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39729932	39729932	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	106	439	0	ENST00000361337.2:c.1247G>A	p.Trp416Ter	p.W416*	ENST00000361337	NM_003286.2	416	tGg/tAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944421	40944421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	76	548	0	ENST00000373198.4:c.2081C>T	p.Pro694Leu	p.P694L	ENST00000373198	NM_133170.3	694	cCt/cTt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37038176	37038177	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	44	174	0	ENST00000231790.2:c.183_184delinsTT	p.Gln62Ter	p.Q62*	ENST00000231790	NM_000249.3	61	atCCaa/atTTaa																																																																														
ATR	545	MSKCC	GRCh37	3	142215898	142215898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	104	409	1	ENST00000350721.4:c.5695C>T	p.Pro1899Ser	p.P1899S	ENST00000350721	NM_001184.3	1899	Cct/Tct																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998081	169998081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138560118		P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	130	567	1	ENST00000295797.4:c.772C>T	p.Arg258Trp	p.R258W	ENST00000295797	NM_002740.5	258	Cgg/Tgg																																																																														
TP63	8626	MSKCC	GRCh37	3	189349324	189349324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	71	302	0	ENST00000264731.3:c.20G>A	p.Arg7Gln	p.R7Q	ENST00000264731	NM_003722.4	7	cGg/cAg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56111456	56111456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	28	155	0	ENST00000399503.3:c.56C>T	p.Ala19Val	p.A19V	ENST00000399503	NM_005921.1	19	gCt/gTt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673787	176673787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	98	379	0	ENST00000439151.2:c.4487C>T	p.Pro1496Leu	p.P1496L	ENST00000439151	NM_022455.4	1496	cCa/cTa																																																																														
IRF4	3662	MSKCC	GRCh37	6	395883	395883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	75	493	0	ENST00000380956.4:c.440C>T	p.Ser147Phe	p.S147F	ENST00000380956	NM_001195286.1	147	tCc/tTc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032190	26032191	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	62	312	1	ENST00000244661.2:c.98_99delinsTT	p.Thr33Ile	p.T33I	ENST00000244661	NM_003537.3	33	aCC/aTT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168655	32168655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	114	491	1	ENST00000375023.3:c.4268C>T	p.Pro1423Leu	p.P1423L	ENST00000375023	NM_004557.3	1423	cCc/cTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184761	32184761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	104	502	0	ENST00000375023.3:c.1822C>T	p.Pro608Ser	p.P608S	ENST00000375023	NM_004557.3	608	Cca/Tca																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004816	150004816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	101	530	0	ENST00000253339.5:c.1409G>A	p.Gly470Glu	p.G470E	ENST00000253339		470	gGa/gAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129133	152129133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	129	561	0	ENST00000206249.3:c.86C>T	p.Pro29Leu	p.P29L	ENST00000206249	NM_000125.3	29	cCg/cTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140476855	140476855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	112	485	0	ENST00000288602.6:c.1551G>A	p.Met517Ile	p.M517I	ENST00000288602	NM_004333.4	517	atG/atA																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072600	5072600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	72	303	0	ENST00000381652.3:c.1750G>A	p.Asp584Asn	p.D584N	ENST00000381652	NM_004972.3	584	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465639	8465640	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	97	442	0	ENST00000356435.5:c.3540_3541delinsTT	p.Arg1181Cys	p.R1181C	ENST00000356435		1180	atCCgt/atTTgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971188	21971190	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	CA			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	153	289	1	ENST00000304494.5:c.168_170delinsTG	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	56	agCGCc/agTGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971188	21971190	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	CA			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	153	289	1	ENST00000304494.5:c.168_170delinsTG	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	56	agCGCc/agTGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971188	21971190	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	CA			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	153	289	1	ENST00000304494.5:c.168_170delinsTG	p.Arg58GlufsTer88	p.R58Efs*88	ENST00000304494	NM_000077.4	56	agCGCc/agTGc																																																																														
PAX5	5079	MSKCC	GRCh37	9	37006506	37006506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	73	390	0	ENST00000358127.4:c.439C>T	p.Pro147Ser	p.P147S	ENST00000358127	NM_001280556.1	147	Ccc/Tcc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482167	87482168	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	116	527	1	ENST00000277120.3:c.1454_1455delinsTT	p.Ser485Phe	p.S485F	ENST00000277120		485	tCC/tTT																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128206794	128206794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	69	410	0	ENST00000265960.3:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000265960	NM_001006617.1	477	Gaa/Aaa																																																																														
ABL1	25	MSKCC	GRCh37	9	133755469	133755469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	140	538	0	ENST00000318560.5:c.1438C>T	p.Pro480Ser	p.P480S	ENST00000318560	NM_005157.4	480	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	83	310	1				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	14	554	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	53	418	0	ENST00000269571.5:c.2305G>C	p.Asp769His	p.D769H	ENST00000269571		769	Gac/Cac																																																																														
NF2	4771	MSKCC	GRCh37	22	30061031	30061031	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	22	528	0	ENST00000338641.4:c.863C>G	p.Ser288Ter	p.S288*	ENST00000338641	NM_000268.3	288	tCa/tGa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514842	103514842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	41	348	0	ENST00000355739.4:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000355739	NM_000123.3	448	tCa/tTa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872380	45872380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	136	680	1	ENST00000391945.4:c.131C>T	p.Ser44Leu	p.S44L	ENST00000391945	NM_000400.3	44	tCa/tTa																																																																														
CIC	23152	MSKCC	GRCh37	19	42794857	42794857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	50	616	0	ENST00000575354.2:c.1937G>C	p.Arg646Thr	p.R646T	ENST00000575354	NM_015125.3	646	aGa/aCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557837	187557837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184443677		P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	132	593	0	ENST00000441802.2:c.3874G>A	p.Glu1292Lys	p.E1292K	ENST00000441802	NM_005245.3	1292	Gaa/Aaa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225379354	225379354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	37	557	1	ENST00000264414.4:c.514G>A	p.Glu172Lys	p.E172K	ENST00000264414	NM_003590.4	172	Gag/Aag																																																																														
TP63	8626	MSKCC	GRCh37	3	189585728	189585728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	92	486	0	ENST00000264731.3:c.989G>C	p.Arg330Thr	p.R330T	ENST00000264731	NM_003722.4	330	aGa/aCa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499483	89499483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	19	497	0	ENST00000336596.2:c.2653C>T	p.Pro885Ser	p.P885S	ENST00000336596	NM_005233.5	885	Ccc/Tcc																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197334	26197334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	75	557	0	ENST00000356476.2:c.145C>A	p.Leu49Met	p.L49M	ENST00000356476		49	Ctg/Atg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155681	56155681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	69	361	0	ENST00000399503.3:c.773C>T	p.Ser258Leu	p.S258L	ENST00000399503	NM_005921.1	258	tCa/tTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289947	15289947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	110	752	0	ENST00000263388.2:c.3607G>A	p.Glu1203Lys	p.E1203K	ENST00000263388	NM_000435.2	1203	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	48878083	48878117	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCG	CCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCG	-			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	115	99	0	ENST00000267163.4:c.45_79del	p.Ala16ProfsTer3	p.A16Pfs*3	ENST00000267163	NM_000321.2	12	aCCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCG/a																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212652777	212652777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	71	419	0	ENST00000342788.4:c.529C>T	p.Leu177Phe	p.L177F	ENST00000342788	NM_005235.2	177	Ctt/Ttt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637199	176637199	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	20	676	0	ENST00000439151.2:c.1799C>G	p.Ser600Ter	p.S600*	ENST00000439151	NM_022455.4	600	tCa/tGa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78414917	78414917	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	22	523	0	ENST00000370768.2:c.1849G>C	p.Glu617Gln	p.E617Q	ENST00000370768	NM_003902.3	617	Gag/Cag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258970	153258970	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	61	303	0	ENST00000281708.4:c.845C>G	p.Ser282Ter	p.S282*	ENST00000281708	NM_033632.3	282	tCa/tGa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2213884	2213884	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	114	819	0	ENST00000398665.3:c.1696C>T	p.Gln566Ter	p.Q566*	ENST00000398665	NM_032482.2	566	Caa/Taa																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246091297	246091297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	80	464	0	ENST00000388985.4:c.638C>T	p.Ser213Leu	p.S213L	ENST00000388985		213	tCg/tTg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619292	37619292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	124	399	0	ENST00000447079.4:c.968C>T	p.Ser323Leu	p.S323L	ENST00000447079	NM_015083.1	323	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11114047	11114047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	32	566	0	ENST00000344626.4:c.1975G>A	p.Glu659Lys	p.E659K	ENST00000344626	NM_003072.3	659	Gaa/Aaa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31449396	31449396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	79	506	0	ENST00000344624.3:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000344624		938	cGg/cAg																																																																														
ALK	238	MSKCC	GRCh37	2	30143370	30143370	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	16	505	0	ENST00000389048.3:c.156G>C	p.Lys52Asn	p.K52N	ENST00000389048	NM_004304.4	52	aaG/aaC																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023087	31023087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	81	634	0	ENST00000375687.4:c.2572C>T	p.Gln858Ter	p.Q858*	ENST00000375687	NM_015338.5	858	Cag/Tag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023183	31023183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	51	711	0	ENST00000375687.4:c.2668C>G	p.Leu890Val	p.L890V	ENST00000375687	NM_015338.5	890	Ctc/Gtc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117755	70117755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	81	652	0	ENST00000245479.2:c.223G>C	p.Glu75Gln	p.E75Q	ENST00000245479	NM_000346.3	75	Gag/Cag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646346	3646346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	17	905	0	ENST00000294008.3:c.1732G>C	p.Glu578Gln	p.E578Q	ENST00000294008	NM_032444.2	578	Gag/Cag																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2488113	2488113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	17	560	0	ENST00000355716.4:c.10C>T	p.Pro4Ser	p.P4S	ENST00000355716	NM_003820.2	4	Cct/Tct																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317178	11317178	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	82	584	0	ENST00000361445.4:c.316A>G	p.Arg106Gly	p.R106G	ENST00000361445	NM_004958.3	106	Aga/Gga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317205	11317205	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	71	457	0	ENST00000361445.4:c.289G>T	p.Glu97Ter	p.E97*	ENST00000361445	NM_004958.3	97	Gaa/Taa																																																																														
MPL	4352	MSKCC	GRCh37	1	43818349	43818349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	93	807	1	ENST00000372470.3:c.1814C>T	p.Ser605Phe	p.S605F	ENST00000372470	NM_005373.2	605	tCt/tTt																																																																														
JUN	3725	MSKCC	GRCh37	1	59248677	59248677	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	123	852	0	ENST00000371222.2:c.66G>C	p.Glu22Asp	p.E22D	ENST00000371222	NM_002228.3	22	gaG/gaC																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468118	120468118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	87	682	0	ENST00000256646.2:c.4321G>A	p.Glu1441Lys	p.E1441K	ENST00000256646	NM_024408.3	1441	Gag/Aag																																																																														
PARP1	142	MSKCC	GRCh37	1	226595597	226595597	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	61	439	0	ENST00000366794.5:c.34G>C	p.Glu12Gln	p.E12Q	ENST00000366794	NM_001618.3	12	Gag/Cag																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577331	64577331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	50	722	0	ENST00000337652.1:c.251C>G	p.Ser84Cys	p.S84C	ENST00000337652	NM_130803.2	84	tCt/tGt																																																																														
CCND2	894	MSKCC	GRCh37	12	4383376	4383376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	58	502	0	ENST00000261254.3:c.170G>C	p.Arg57Thr	p.R57T	ENST00000261254	NM_001759.3	57	aGa/aCa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125004	46125004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	51	264	0	ENST00000334344.6:c.191C>T	p.Ser64Phe	p.S64F	ENST00000334344	NM_152641.2	64	tCt/tTt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865082	57865082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	58	897	1	ENST00000228682.2:c.2559G>T	p.Gln853His	p.Q853H	ENST00000228682	NM_005269.2	853	caG/caT																																																																														
FLT3	2322	MSKCC	GRCh37	13	28597540	28597540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	77	674	0	ENST00000241453.7:c.2365C>T	p.Leu789Phe	p.L789F	ENST00000241453	NM_004119.2	789	Ctt/Ttt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32905150	32905150	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	96	425	0	ENST00000380152.3:c.776G>C	p.Arg259Thr	p.R259T	ENST00000380152		259	aGa/aCa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918733	32918733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	21	165	0	ENST00000380152.3:c.6880G>C	p.Asp2294His	p.D2294H	ENST00000380152		2294	Gac/Cac																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134763	41134763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	31	422	0	ENST00000379561.5:c.865G>A	p.Gly289Arg	p.G289R	ENST00000379561	NM_002015.3	289	Gga/Aga																																																																														
RB1	5925	MSKCC	GRCh37	13	48881400	48881420	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATTTTCATTTGGTAGGCTTG	TATTTTCATTTGGTAGGCTTG	-			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	44	166	0	ENST00000267163.4:c.138-16_142del		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345095	73345095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	33	361	0	ENST00000377767.4:c.1702C>A	p.His568Asn	p.H568N	ENST00000377767	NM_014953.3	568	Cac/Aac																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437112	110437112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	11	82	0	ENST00000375856.3:c.1289C>T	p.Ser430Phe	p.S430F	ENST00000375856	NM_003749.2	430	tCc/tTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438226	110438226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	37	116	0	ENST00000375856.3:c.175G>A	p.Glu59Lys	p.E59K	ENST00000375856	NM_003749.2	59	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	41991085	41991085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	107	489	0	ENST00000219905.7:c.2038G>A	p.Asp680Asn	p.D680N	ENST00000219905	NM_001164273.1	680	Gat/Aat																																																																														
MGA	23269	MSKCC	GRCh37	15	42059029	42059029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	44	450	0	ENST00000219905.7:c.8749G>A	p.Ala2917Thr	p.A2917T	ENST00000219905	NM_001164273.1	2917	Gca/Aca																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43738643	43738643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	93	689	0	ENST00000382044.4:c.2982G>A	p.Met994Ile	p.M994I	ENST00000382044	NM_001141980.1	994	atG/atA																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762067	43762067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	74	639	0	ENST00000382044.4:c.1378C>T	p.Gln460Ter	p.Q460*	ENST00000382044	NM_001141980.1	460	Cag/Tag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467239	99467239	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	20	295	0	ENST00000268035.6:c.2620G>C	p.Glu874Gln	p.E874Q	ENST00000268035	NM_000875.3	874	Gag/Cag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126548	2126548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	71	748	1	ENST00000219476.3:c.2799C>A	p.Phe933Leu	p.F933L	ENST00000219476	NM_000548.3	933	ttC/ttA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961280	15961280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	67	588	0	ENST00000268712.3:c.6109G>A	p.Glu2037Lys	p.E2037K	ENST00000268712	NM_006311.3	2037	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983764	15983764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	35	602	3	ENST00000268712.3:c.3358G>A	p.Glu1120Lys	p.E1120K	ENST00000268712	NM_006311.3	1120	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16040717	16040717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	44	255	0	ENST00000268712.3:c.1417G>T	p.Asp473Tyr	p.D473Y	ENST00000268712	NM_006311.3	473	Gat/Tat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37856495	37856495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	82	288	0	ENST00000269571.5:c.4G>C	p.Glu2Gln	p.E2Q	ENST00000269571		2	Gag/Cag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37873661	37873661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	322	795	0	ENST00000269571.5:c.1826C>G	p.Ser609Cys	p.S609C	ENST00000269571		609	tCc/tGc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234427	41234427	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	194	514	0	ENST00000357654.3:c.4351G>C	p.Glu1451Gln	p.E1451Q	ENST00000357654	NM_007294.3	1451	Gaa/Caa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41247905	41247905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	81	543	1	ENST00000357654.3:c.628C>T	p.Gln210Ter	p.Q210*	ENST00000357654	NM_007294.3	210	Caa/Taa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533069	63533069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	68	635	1	ENST00000307078.5:c.1825C>A	p.Pro609Thr	p.P609T	ENST00000307078	NM_004655.3	609	Ccc/Acc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936755	78936755	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	126	817	0	ENST00000306801.3:c.3837C>G	p.Ile1279Met	p.I1279M	ENST00000306801	NM_020761.2	1279	atC/atG																																																																														
YES1	7525	MSKCC	GRCh37	18	745735	745735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	88	617	0	ENST00000314574.4:c.697C>G	p.Leu233Val	p.L233V	ENST00000314574	NM_005433.3	233	Ctg/Gtg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591955	48591955	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	14	477	0	ENST00000342988.3:c.1118C>G	p.Thr373Arg	p.T373R	ENST00000342988	NM_005359.5	373	aCa/aGa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210764	5210764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	29	830	0	ENST00000357368.4:c.5287G>C	p.Asp1763His	p.D1763H	ENST00000357368	NM_002850.3	1763	Gac/Cac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097180	11097180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	74	667	1	ENST00000344626.4:c.671C>T	p.Ser224Leu	p.S224L	ENST00000344626	NM_003072.3	224	tCg/tTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271823	15271823	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	91	767	0	ENST00000263388.2:c.6616G>C	p.Glu2206Gln	p.E2206Q	ENST00000263388	NM_000435.2	2206	Gag/Cag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965421	18965421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	17	416	0	ENST00000262803.5:c.1168G>A	p.Glu390Lys	p.E390K	ENST00000262803	NM_002911.3	390	Gag/Aag																																																																														
PMS1	5378	MSKCC	GRCh37	2	190717447	190717447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	82	374	0	ENST00000441310.2:c.766G>A	p.Glu256Lys	p.E256K	ENST00000441310	NM_000534.4	256	Gaa/Aaa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719175	190719175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	62	303	1	ENST00000441310.2:c.1177G>T	p.Asp393Tyr	p.D393Y	ENST00000441310	NM_000534.4	393	Gat/Tat																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023498	31023498	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	68	497	0	ENST00000375687.4:c.2983C>G	p.His995Asp	p.H995D	ENST00000375687	NM_015338.5	995	Cac/Gac																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386358	31386378	+	inframe_deletion	In_Frame_Del	DEL	TCCCGCAGCGCTGTCATGGCG	TCCCGCAGCGCTGTCATGGCG	-			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	104	667	0	ENST00000328111.2:c.1586_1606del	p.Pro529_Val535del	p.P529_V535del	ENST00000328111	NM_006892.3	528	cTCCCGCAGCGCTGTCATGGCGtc/ctc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161868	47161868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	96	531	0	ENST00000409792.3:c.4258G>A	p.Glu1420Lys	p.E1420K	ENST00000409792	NM_014159.6	1420	Gag/Aag																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149243913	149243913	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	95	466	0	ENST00000360632.3:c.906-1G>A		p.X302_splice	ENST00000360632	NM_015472.4	302																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539417	187539417	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	43	443	0	ENST00000441802.2:c.8323C>T	p.Gln2775Ter	p.Q2775*	ENST00000441802	NM_005245.3	2775	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295298	1295298	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	15	479	0				ENST00000310581	NM_198253.2																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176518732	176518732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	67	793	0	ENST00000292408.4:c.650C>T	p.Ser217Leu	p.S217L	ENST00000292408	NM_213647.1	217	tCg/tTg																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158611	26158611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	22	355	0	ENST00000289316.2:c.214G>A	p.Glu72Lys	p.E72K	ENST00000289316	NM_138720.2	72	Gag/Aag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30668382	30668382	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	36	552	0	ENST00000376406.3:c.6130C>T	p.Gln2044Ter	p.Q2044*	ENST00000376406	NM_014641.2	2044	Cag/Tag																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324214	31324214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	68	528	0	ENST00000412585.2:c.349C>A	p.His117Asn	p.H117N	ENST00000412585	NM_005514.6	117	Cac/Aac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117717416	117717416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	16	394	0	ENST00000368508.3:c.791C>T	p.Ala264Val	p.A264V	ENST00000368508	NM_002944.2	264	gCa/gTa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016283	150016283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	97	659	0	ENST00000253339.5:c.423G>C	p.Met141Ile	p.M141I	ENST00000253339		141	atG/atC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151848628	151848628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	49	308	0	ENST00000262189.6:c.12565G>A	p.Glu4189Lys	p.E4189K	ENST00000262189	NM_170606.2	4189	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874923	151874923	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	25	404	0	ENST00000262189.6:c.7615C>G	p.Gln2539Glu	p.Q2539E	ENST00000262189	NM_170606.2	2539	Cag/Gag																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864878	117864878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	234	601	0	ENST00000297338.2:c.1231G>C	p.Asp411His	p.D411H	ENST00000297338	NM_006265.2	411	Gat/Cat																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139811033	139811033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	129	708	0	ENST00000247668.2:c.644C>T	p.Pro215Leu	p.P215L	ENST00000247668	NM_021138.3	215	cCt/cTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934236	39934236	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	51	381	0	ENST00000378444.4:c.363G>C	p.Glu121Asp	p.E121D	ENST00000378444	NM_001123385.1	121	gaG/gaC																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922744	44922745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AACTCAGTCTCTGGCCAGCAGCCAC			P-0032842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	10	202	0	ENST00000377967.4:c.1607_1631dup	p.Ala546SerfsTer15	p.A546Sfs*15	ENST00000377967	NM_021140.2	535	-/AACTCAGTCTCTGGCCAGCAGCCAC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	32	332	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	32	332	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	32	332	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			855	95	637	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597395	10597395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			823	118	690	0	ENST00000171111.5:c.1808G>T	p.Gly603Val	p.G603V	ENST00000171111	NM_203500.1	603	gGg/gTg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			817	82	497	0	ENST00000371085.3:c.680A>T	p.Gln227Leu	p.Q227L	ENST00000371085	NM_000516.4	227	cAg/cTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786868	135786868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	84	421	0	ENST00000298552.3:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000298552	NM_001162426.1	334	tCg/tTg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980416	201980416	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			871	85	557	0	ENST00000359651.3:c.152T>G	p.Leu51Trp	p.L51W	ENST00000359651		51	tTg/tGg																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748116	41748116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			136	28	106	0	ENST00000226382.2:c.653C>A	p.Pro218His	p.P218H	ENST00000226382	NM_003924.3	218	cCc/cAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144529	55144529	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	101	508	0	ENST00000257290.5:c.2003G>T	p.Gly668Val	p.G668V	ENST00000257290	NM_006206.4	668	gGc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112154846	112154865	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCGGGGCAGTAAAGAGGC	TCCCGGGGCAGTAAAGAGGC	-			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			820	120	557	0	ENST00000257430.4:c.1119_1138del	p.Arg374GlyfsTer16	p.R374Gfs*16	ENST00000257430	NM_000038.5	373	TCCCGGGGCAGTAAAGAGGCt/t																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500885	8500885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			811	58	574	0	ENST00000356435.5:c.1997C>G	p.Pro666Arg	p.P666R	ENST00000356435		666	cCt/cGt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786887	135786887	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			597	77	396	0	ENST00000298552.3:c.982C>T	p.Gln328Ter	p.Q328*	ENST00000298552	NM_001162426.1	328	Cag/Tag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317421	1317421	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0032922-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			743	48	529	0				ENST00000381566																																																																																	
PIK3CD	5293	MSKCC	GRCh37	1	9780872	9780872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	49	774	0	ENST00000377346.4:c.1594T>C	p.Trp532Arg	p.W532R	ENST00000377346	NM_005026.3	532	Tgg/Cgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255248	16255248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	131	453	2	ENST00000375759.3:c.2513C>T	p.Thr838Met	p.T838M	ENST00000375759	NM_015001.2	838	aCg/aTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256124	16256124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	41	653	0	ENST00000375759.3:c.3389G>T	p.Arg1130Met	p.R1130M	ENST00000375759	NM_015001.2	1130	aGg/aTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259754	16259754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	52	582	0	ENST00000375759.3:c.7019G>A	p.Arg2340His	p.R2340H	ENST00000375759	NM_015001.2	2340	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16265804	16265804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	121	718	0	ENST00000375759.3:c.10877T>C	p.Leu3626Pro	p.L3626P	ENST00000375759	NM_015001.2	3626	cTg/cCg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097661	27097661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	161	631	0	ENST00000324856.7:c.3250A>G	p.Thr1084Ala	p.T1084A	ENST00000324856	NM_006015.4	1084	Aca/Gca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	134	576	3	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739415	46739415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	45	516	0	ENST00000371975.4:c.1606C>T	p.Arg536Ter	p.R536*	ENST00000371975	NM_003579.3	536	Cga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65301079	65301079	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	96	344	0	ENST00000342505.4:c.3369G>T	p.Glu1123Asp	p.E1123D	ENST00000342505	NM_002227.2	1123	gaG/gaT																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	120	507	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65310468	65310468	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	54	524	0	ENST00000342505.4:c.2220delC	p.Gly741AlafsTer30	p.G741Afs*30	ENST00000342505	NM_002227.2	740	ccC/cc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	38	490	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330611	65330611	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	53	680	0	ENST00000342505.4:c.1035delA	p.Lys345AsnfsTer32	p.K345Nfs*32	ENST00000342505	NM_002227.2	345	aaA/aa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058500	72058500	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	63	649	0	ENST00000357731.5:c.940C>T	p.Pro314Ser	p.P314S	ENST00000357731	NM_173808.2	314	Cct/Tct																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115262317	115262317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	57	585	0	ENST00000438362.2:c.2237T>C	p.Phe746Ser	p.F746S	ENST00000438362	NM_001242891.1	746	tTc/tCc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115275258	115275258	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	49	783	1	ENST00000438362.2:c.1155T>A	p.Asn385Lys	p.N385K	ENST00000438362	NM_001242891.1	385	aaT/aaA																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120493383	120493383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	41	634	0	ENST00000256646.2:c.2443A>G	p.Ser815Gly	p.S815G	ENST00000256646	NM_024408.3	815	Agt/Ggt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746002	162746002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	34	558	0	ENST00000367921.3:c.2125C>T	p.Arg709Ter	p.R709*	ENST00000367921	NM_006182.2	709	Cga/Tga																																																																														
NUF2	83540	MSKCC	GRCh37	1	163297290	163297290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	37	730	2	ENST00000271452.3:c.136C>T	p.His46Tyr	p.H46Y	ENST00000271452	NM_145697.2	46	Cac/Tac																																																																														
NUF2	83540	MSKCC	GRCh37	1	163306589	163306589	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	46	621	0	ENST00000271452.3:c.386A>G	p.His129Arg	p.H129R	ENST00000271452	NM_145697.2	129	cAc/cGc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176153769	176153770	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	32	546	0	ENST00000367669.3:c.466dup	p.Cys156LeufsTer13	p.C156Lfs*13	ENST00000367669	NM_022457.5	156	tgc/tTgc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193107258	193107258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	30	438	1	ENST00000367435.3:c.467G>A	p.Arg156His	p.R156H	ENST00000367435	NM_024529.4	156	cGt/cAt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649553	206649553	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147688366		P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	51	611	0	ENST00000367120.3:c.388G>A	p.Gly130Ser	p.G130S	ENST00000367120	NM_014002.3	130	Ggc/Agc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206664179	206664179	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	53	540	0	ENST00000367120.3:c.1721A>G	p.His574Arg	p.H574R	ENST00000367120	NM_014002.3	574	cAc/cGc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097740	8097740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	65	544	0	ENST00000346208.3:c.122A>G	p.Tyr41Cys	p.Y41C	ENST00000346208		41	tAc/tGc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63760077	63760077	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	42	355	0	ENST00000279873.7:c.730T>C	p.Phe244Leu	p.F244L	ENST00000279873	NM_032199.2	244	Ttt/Ctt																																																																														
TET1	80312	MSKCC	GRCh37	10	70333914	70333914	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	22	437	0	ENST00000373644.4:c.1819A>G	p.Thr607Ala	p.T607A	ENST00000373644	NM_030625.2	607	Act/Gct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653808	89653808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	29	570	0	ENST00000371953.3:c.106G>A	p.Gly36Arg	p.G36R	ENST00000371953	NM_000314.4	36	Gga/Aga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	21	282	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
WT1	7490	MSKCC	GRCh37	11	32421565	32421565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	45	782	0	ENST00000332351.3:c.1027A>G	p.Asn343Asp	p.N343D	ENST00000332351	NM_024426.4	343	Aac/Gac																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129438	64129438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	45	687	2	ENST00000334205.4:c.874del	p.Ala292HisfsTer83	p.A292Hfs*83	ENST00000334205	NM_003942.2	290	caG/ca																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	164	953	7	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77103478	77103478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	85	489	0	ENST00000356341.3:c.88G>T	p.Asp30Tyr	p.D30Y	ENST00000356341	NM_002576.4	30	Gat/Tat																																																																														
ATM	472	MSKCC	GRCh37	11	108202742	108202742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	58	474	0	ENST00000278616.4:c.7766A>G	p.Lys2589Arg	p.K2589R	ENST00000278616	NM_000051.3	2589	aAa/aGa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376653	118376653	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	110	641	0	ENST00000534358.1:c.10046T>C	p.Met3349Thr	p.M3349T	ENST00000534358	NM_005933.3	3349	aTg/aCg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	463324	463324	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	37	516	0	ENST00000399788.2:c.947A>G	p.Asp316Gly	p.D316G	ENST00000399788	NM_001042603.1	316	gAc/gGc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037382	12037382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	61	844	0	ENST00000396373.4:c.1013G>A	p.Cys338Tyr	p.C338Y	ENST00000396373	NM_001987.4	338	tGt/tAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211462	46211462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	72	320	0	ENST00000334344.6:c.428G>A	p.Arg143His	p.R143H	ENST00000334344	NM_152641.2	143	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431115	49431115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	55	710	1	ENST00000301067.7:c.10024C>T	p.Arg3342Cys	p.R3342C	ENST00000301067	NM_003482.3	3342	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444809	49444809	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	209	757	2	ENST00000301067.7:c.2657delC	p.Pro886LeufsTer44	p.P886Lfs*44	ENST00000301067	NM_003482.3	886	cCt/ct																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861149	57861149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	171	560	0	ENST00000228682.2:c.946G>A	p.Glu316Lys	p.E316K	ENST00000228682	NM_005269.2	316	Gaa/Aaa																																																																														
MSI1	4440	MSKCC	GRCh37	12	120796835	120796835	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	61	709	0	ENST00000257552.2:c.424T>C	p.Phe142Leu	p.F142L	ENST00000257552	NM_002442.3	142	Ttt/Ctt																																																																														
MSI1	4440	MSKCC	GRCh37	12	120805853	120805853	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	59	771	0	ENST00000257552.2:c.225T>G	p.Asp75Glu	p.D75E	ENST00000257552	NM_002442.3	75	gaT/gaG																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986596	36986596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	38	316	0	ENST00000354822.5:c.1093G>A	p.Ala365Thr	p.A365T	ENST00000354822	NM_001079668.2	365	Gcc/Acc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060991	38060992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	90	324	0	ENST00000250448.2:c.996_997dup	p.Gln333ProfsTer18	p.Q333Pfs*18	ENST00000250448	NM_004496.3	333	cag/cCCag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061469	38061469	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	144	524	0	ENST00000250448.2:c.520T>A	p.Ser174Thr	p.S174T	ENST00000250448	NM_004496.3	174	Tcg/Acg																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68331813	68331813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	49	619	0	ENST00000487270.1:c.409G>A	p.Ala137Thr	p.A137T	ENST00000487270	NM_133509.3	137	Gct/Act																																																																														
MGA	23269	MSKCC	GRCh37	15	41961400	41961400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	148	705	0	ENST00000219905.7:c.308G>A	p.Arg103His	p.R103H	ENST00000219905	NM_001164273.1	103	cGc/cAc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	37	1055	5	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457358	67457358	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	41	725	0	ENST00000327367.4:c.332T>C	p.Phe111Ser	p.F111S	ENST00000327367	NM_005902.3	111	tTc/tCc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347902	347902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	90	933	0	ENST00000262320.3:c.1604T>C	p.Val535Ala	p.V535A	ENST00000262320	NM_003502.3	535	gTc/gCc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639471	3639471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	61	771	0	ENST00000294008.3:c.4168G>T	p.Gly1390Cys	p.G1390C	ENST00000294008	NM_032444.2	1390	Ggt/Tgt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646304	3646304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	66	850	0	ENST00000294008.3:c.1774A>G	p.Thr592Ala	p.T592A	ENST00000294008	NM_032444.2	592	Act/Gct																																																																														
PALB2	79728	MSKCC	GRCh37	16	23619248	23619248	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	147	670	0	ENST00000261584.4:c.3287A>G	p.Asn1096Ser	p.N1096S	ENST00000261584	NM_024675.3	1096	aAc/aGc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671723	67671723	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	67	681	1	ENST00000264010.4:c.2136del	p.Asn713ThrfsTer8	p.N713Tfs*8	ENST00000264010	NM_006565.3	711	gCc/gc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7976156	7976156	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	56	738	0	ENST00000319144.4:c.2039A>G	p.Asn680Ser	p.N680S	ENST00000319144	NM_001139.2	680	aAc/aGc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	36	665	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
FLCN	201163	MSKCC	GRCh37	17	17127276	17127276	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	50	704	0	ENST00000285071.4:c.578T>A	p.Val193Asp	p.V193D	ENST00000285071	NM_144997.5	193	gTc/gAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29667646	29667646	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56013763		P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	93	601	0	ENST00000358273.4:c.7045C>T	p.Arg2349Cys	p.R2349C	ENST00000358273	NM_001042492.2	2349	Cgt/Tgt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40364210	40364210	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	39	1053	0	ENST00000293328.3:c.1474-2A>G		p.X492_splice	ENST00000293328	NM_012448.3	492																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59876542	59876542	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	36	716	0	ENST00000259008.2:c.1259A>T	p.Asp420Val	p.D420V	ENST00000259008	NM_032043.2	420	gAt/gTt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554698	63554698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	41	552	0	ENST00000307078.5:c.41G>A	p.Ser14Asn	p.S14N	ENST00000307078	NM_004655.3	14	aGc/aAc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617679	39617680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	36	551	0	ENST00000262039.4:c.1869dup	p.Lys624Ter	p.K624*	ENST00000262039	NM_002647.2	621	-/T																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593507	48593507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	111	437	1	ENST00000342988.3:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000342988	NM_005359.5	420	Cgt/Tgt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212403	5212403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	248	838	3	ENST00000357368.4:c.4714C>T	p.Arg1572Trp	p.R1572W	ENST00000357368	NM_002850.3	1572	Cgg/Tgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599978	10599978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	68	815	1	ENST00000171111.5:c.1598G>A	p.Ser533Asn	p.S533N	ENST00000171111	NM_203500.1	533	aGc/aAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18974315	18974315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	95	677	0	ENST00000262803.5:c.2669A>G	p.Asn890Ser	p.N890S	ENST00000262803	NM_002911.3	890	aAc/aGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210686	36210686	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	40	643	0	ENST00000222270.7:c.437G>A	p.Gly146Asp	p.G146D	ENST00000222270	NM_014727.1	146	gGt/gAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211795	36211795	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	53	911	0	ENST00000222270.7:c.1549del	p.Ser517AlafsTer5	p.S517Afs*5	ENST00000222270	NM_014727.1	516	Aaa/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228964	36228964	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	107	685	0	ENST00000222270.7:c.7744T>C	p.Ser2582Pro	p.S2582P	ENST00000222270	NM_014727.1	2582	Tca/Cca																																																																														
CIC	23152	MSKCC	GRCh37	19	42794554	42794554	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150295260		P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	79	873	2	ENST00000575354.2:c.1634C>T	p.Ser545Leu	p.S545L	ENST00000575354	NM_015125.3	545	tCg/tTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	138	701	5	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25973154	25973154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	44	588	0	ENST00000435504.4:c.1271C>A	p.Pro424Gln	p.P424Q	ENST00000435504		424	cCa/cAa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605218	46605218	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	22	349	0	ENST00000263734.3:c.1435T>A	p.Cys479Ser	p.C479S	ENST00000263734	NM_001430.4	479	Tgc/Agc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033685	48033685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	39	488	1	ENST00000234420.5:c.3896G>A	p.Gly1299Asp	p.G1299D	ENST00000234420	NM_000179.2	1299	gGc/gAc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	32	775	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721045	61721045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	27	595	0	ENST00000401558.2:c.1229T>C	p.Leu410Ser	p.L410S	ENST00000401558	NM_003400.3	410	tTg/tCg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172064	99172064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	47	657	0	ENST00000074304.5:c.1630C>T	p.Arg544Cys	p.R544C	ENST00000074304	NM_001134224.1	544	Cgt/Tgt																																																																														
INHA	3623	MSKCC	GRCh37	2	220439482	220439482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	47	614	0	ENST00000243786.2:c.335G>A	p.Arg112Lys	p.R112K	ENST00000243786	NM_002191.3	112	aGa/aAa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384619	31384619	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	67	718	0	ENST00000328111.2:c.1325del	p.Asn442ThrfsTer148	p.N442Tfs*148	ENST00000328111	NM_006892.3	441	Aaa/aa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101047	41101047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	158	788	2	ENST00000373198.4:c.1309G>A	p.Ala437Thr	p.A437T	ENST00000373198	NM_133170.3	437	Gcc/Acc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164602	36164602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	49	544	0	ENST00000300305.3:c.1273C>T	p.Pro425Ser	p.P425S	ENST00000300305		425	Ccg/Tcg																																																																														
ERG	2078	MSKCC	GRCh37	21	39755705	39755705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	174	701	1	ENST00000288319.7:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000288319	NM_182918.3	354	Cgg/Tgg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656872	45656872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	52	666	1	ENST00000407780.3:c.284A>G	p.Asp95Gly	p.D95G	ENST00000407780	NM_001283052.1	95	gAc/gGc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940153	49940153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	70	702	0	ENST00000296474.3:c.890T>A	p.Val297Asp	p.V297D	ENST00000296474	NM_002447.2	297	gTc/gAc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438572	52438572	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201844078		P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	54	574	0	ENST00000460680.1:c.1147C>T	p.Arg383Cys	p.R383C	ENST00000460680	NM_004656.3	383	Cgc/Tgc																																																																														
MITF	4286	MSKCC	GRCh37	3	69928487	69928487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	54	692	0	ENST00000352241.4:c.307C>T	p.Pro103Ser	p.P103S	ENST00000352241	NM_198159.2	103	Ccc/Tcc																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72890194	72890194	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	120	526	1	ENST00000325599.8:c.486+2T>C		p.X162_splice	ENST00000325599	NM_018130.2	162																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89528582	89528582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	30	286	0	ENST00000336596.2:c.2882C>A	p.Pro961Gln	p.P961Q	ENST00000336596	NM_005233.5	961	cCa/cAa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138375111	138375111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	35	487	0	ENST00000289153.2:c.2948G>A	p.Arg983His	p.R983H	ENST00000289153	NM_006219.2	983	cGc/cAc																																																																														
ATR	545	MSKCC	GRCh37	3	142172005	142172005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	59	825	0	ENST00000350721.4:c.7726C>T	p.Pro2576Ser	p.P2576S	ENST00000350721	NM_001184.3	2576	Cca/Tca																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430410	181430410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	42	544	0	ENST00000325404.1:c.262C>T	p.Arg88Trp	p.R88W	ENST00000325404	NM_003106.3	88	Cgg/Tgg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146476	185146476	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	31	570	0	ENST00000265026.3:c.107A>T	p.Asn36Ile	p.N36I	ENST00000265026	NM_004721.4	36	aAc/aTc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502386	186502386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	170	650	0	ENST00000323963.5:c.109G>C	p.Asp37His	p.D37H	ENST00000323963		37	Gat/Cat																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803118	1803118	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	36	727	1	ENST00000260795.2:c.470A>G	p.Glu157Gly	p.E157G	ENST00000260795		157	gAg/gGg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133538	55133538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	65	607	0	ENST00000257290.5:c.842C>T	p.Thr281Met	p.T281M	ENST00000257290	NM_006206.4	281	aCg/aTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55968156	55968156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	41	642	0	ENST00000263923.4:c.2174G>A	p.Arg725His	p.R725H	ENST00000263923	NM_002253.2	725	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	36	705	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557785	187557785	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	33	527	0	ENST00000441802.2:c.3926T>C	p.Val1309Ala	p.V1309A	ENST00000441802	NM_005245.3	1309	gTt/gCt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31401569	31401570	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	67	799	0	ENST00000344624.3:c.4094_4095delAG	p.Glu1365AlafsTer3	p.E1365Afs*3	ENST00000344624		1365	gAG/g																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160636	56160636	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	133	382	0	ENST00000399503.3:c.910A>G	p.Thr304Ala	p.T304A	ENST00000399503	NM_005921.1	304	Aca/Gca																																																																														
APC	324	MSKCC	GRCh37	5	112173515	112173515	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	21	428	0	ENST00000257430.4:c.2224A>G	p.Ile742Val	p.I742V	ENST00000257430	NM_000038.5	742	Att/Gtt																																																																														
APC	324	MSKCC	GRCh37	5	112179287	112179287	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	21	480	0	ENST00000257430.4:c.7996A>G	p.Ile2666Val	p.I2666V	ENST00000257430	NM_000038.5	2666	Att/Gtt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149436870	149436870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	130	590	0	ENST00000286301.3:c.2299G>T	p.Ala767Ser	p.A767S	ENST00000286301	NM_005211.3	767	Gcc/Tcc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149498310	149498311	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	41	600	0	ENST00000261799.4:c.2903dup	p.Lys969GlufsTer7	p.K969Efs*7	ENST00000261799	NM_002609.3	968	aag/aaAg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149510165	149510165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	83	806	0	ENST00000261799.4:c.1304G>A	p.Arg435His	p.R435H	ENST00000261799	NM_002609.3	435	cGc/cAc																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271488	26271488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	28	444	0	ENST00000305910.3:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000305910	NM_003534.2	42	tAc/tGc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120293	94120293	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	130	496	0	ENST00000369303.4:c.758A>G	p.Glu253Gly	p.E253G	ENST00000369303	NM_004440.3	253	gAa/gGa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553759	106553759	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	29	439	0	ENST00000369096.4:c.1724A>G	p.Tyr575Cys	p.Y575C	ENST00000369096	NM_001198.3	575	tAc/tGc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200419	138200419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	91	675	0	ENST00000237289.4:c.1837G>A	p.Val613Met	p.V613M	ENST00000237289	NM_001270507.1	613	Gtg/Atg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265368	152265368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	36	521	0	ENST00000206249.3:c.821G>T	p.Gly274Val	p.G274V	ENST00000206249	NM_000125.3	274	gGg/gTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157488256	157488256	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	34	521	0	ENST00000346085.5:c.2962A>G	p.Ser988Gly	p.S988G	ENST00000346085	NM_020732.3	988	Agc/Ggc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528016	157528016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	178	602	0	ENST00000346085.5:c.5741G>A	p.Arg1914Gln	p.R1914Q	ENST00000346085	NM_020732.3	1914	cGg/cAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984157	2984157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	40	512	2	ENST00000396946.4:c.373G>A	p.Glu125Lys	p.E125K	ENST00000396946	NM_032415.4	125	Gag/Aag																																																																														
HGF	3082	MSKCC	GRCh37	7	81399286	81399286	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	95	686	0	ENST00000222390.5:c.2T>C	p.Met1?	p.M1?	ENST00000222390	NM_000601.4	1	aTg/aCg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509514	106509514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	50	622	0	ENST00000359195.3:c.1508C>T	p.Thr503Met	p.T503M	ENST00000359195	NM_002649.2	503	aCg/aTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128846206	128846206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	44	768	1	ENST00000249373.3:c.1136C>T	p.Ala379Val	p.A379V	ENST00000249373	NM_005631.4	379	gCg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860868	151860868	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	50	617	0	ENST00000262189.6:c.9794A>G	p.Tyr3265Cys	p.Y3265C	ENST00000262189	NM_170606.2	3265	tAt/tGt																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38187005	38187005	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	48	885	0	ENST00000317025.8:c.1472A>G	p.Asp491Gly	p.D491G	ENST00000317025	NM_023034.1	491	gAt/gGt																																																																														
LYN	4067	MSKCC	GRCh37	8	56860268	56860268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	133	468	0	ENST00000519728.1:c.270G>A	p.Met90Ile	p.M90I	ENST00000519728	NM_002350.3	90	atG/atA																																																																														
LYN	4067	MSKCC	GRCh37	8	56922493	56922493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	102	470	0	ENST00000519728.1:c.1363G>A	p.Ala455Thr	p.A455T	ENST00000519728	NM_002350.3	455	Gcc/Acc																																																																														
NBN	4683	MSKCC	GRCh37	8	90982691	90982691	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769420		P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	49	505	0	ENST00000265433.3:c.797C>T	p.Pro266Leu	p.P266L	ENST00000265433	NM_002485.4	266	cCg/cTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528707	8528707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	132	468	0	ENST00000356435.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000356435		142	aCg/aTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	59	326	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	59	326	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	59	326	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971141	21971141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	44	368	0	ENST00000304494.5:c.217G>A	p.Ala73Thr	p.A73T	ENST00000304494	NM_000077.4	73	Gcc/Acc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971141	21971141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	44	368	0	ENST00000304494.5:c.217G>A	p.Ala73Thr	p.A73T	ENST00000304494	NM_000077.4	73	Gcc/Acc																																																																														
TEK	7010	MSKCC	GRCh37	9	27203073	27203073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	33	662	0	ENST00000380036.4:c.2165A>G	p.Asn722Ser	p.N722S	ENST00000380036	NM_000459.3	722	aAc/aGc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98244295	98244295	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	23	543	0	ENST00000331920.6:c.682A>T	p.Ile228Phe	p.I228F	ENST00000331920	NM_000264.3	228	Att/Ttt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891282	101891282	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	42	791	0	ENST00000374994.4:c.243T>A	p.Asp81Glu	p.D81E	ENST00000374994	NM_004612.2	81	gaT/gaA																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912101	127912101	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	42	523	0	ENST00000373547.4:c.769T>C	p.Ser257Pro	p.S257P	ENST00000373547	NM_002721.4	257	Tct/Cct																																																																														
ABL1	25	MSKCC	GRCh37	9	133730247	133730247	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	88	675	0	ENST00000318560.5:c.317del	p.Asn106MetfsTer36	p.N106Mfs*36	ENST00000318560	NM_005157.4	105	Aaa/aa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	30	526	1	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	57	748	2	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417424	139417424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	57	729	0	ENST00000277541.6:c.620G>A	p.Arg207His	p.R207H	ENST00000277541	NM_017617.3	207	cGc/cAc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317487	1317487	+	downstream_gene_variant	3'Flank	SNP	A	A	G			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	46	799	0				ENST00000381566																																																																																	
BCOR	54880	MSKCC	GRCh37	X	39932408	39932408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	85	439	1	ENST00000378444.4:c.2191C>T	p.Pro731Ser	p.P731S	ENST00000378444	NM_001123385.1	731	Cca/Tca																																																																														
AR	367	MSKCC	GRCh37	X	66765934	66765934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	21	413	0	ENST00000374690.3:c.946T>C	p.Tyr316His	p.Y316H	ENST00000374690	NM_000044.3	316	Tac/Cac																																																																														
AR	367	MSKCC	GRCh37	X	66931247	66931247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	69	227	0	ENST00000374690.3:c.1889G>A	p.Arg630Gln	p.R630Q	ENST00000374690	NM_000044.3	630	cGg/cAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465650	8465650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	23	368	0	ENST00000356435.5:c.3530G>T	p.Arg1177Leu	p.R1177L	ENST00000356435		1177	cGc/cTc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73334699	73334699	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	36	270	0	ENST00000377767.4:c.2761C>T	p.Gln921Ter	p.Q921*	ENST00000377767	NM_014953.3	921	Cag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46242716	46242716	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	86	325	0	ENST00000334344.6:c.1678G>T	p.Gly560Ter	p.G560*	ENST00000334344	NM_152641.2	560	Gga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	119	549	0	ENST00000269305.4:c.848del	p.Arg283ProfsTer62	p.R283Pfs*62	ENST00000269305	NM_001126112.2	283	cGc/cc																																																																														
ERF	2077	MSKCC	GRCh37	19	42754666	42754666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	73	369	1	ENST00000222329.4:c.74G>T	p.Arg25Met	p.R25M	ENST00000222329	NM_006494.2	25	aGg/aTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	40	435	0	ENST00000342788.4:c.2540G>T	p.Arg847Leu	p.R847L	ENST00000342788	NM_005235.2	847	cGt/cTt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133579	55133579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	41	397	0	ENST00000257290.5:c.883G>T	p.Ala295Ser	p.A295S	ENST00000257290	NM_006206.4	295	Gct/Tct																																																																														
KDR	3791	MSKCC	GRCh37	4	55979642	55979642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	49	403	0	ENST00000263923.4:c.805C>A	p.His269Asn	p.H269N	ENST00000263923	NM_002253.2	269	Cat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TTT			P-0033129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	169	421	1	ENST00000275493.2:c.2303_2305delinsTTT	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTTTtg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	45	370	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	79	716	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0033364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	38	366	1	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650756	67650756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	97	649	0	ENST00000264010.4:c.1061C>T	p.Ser354Phe	p.S354F	ENST00000264010	NM_006565.3	354	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0033364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	69	708	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
MPL	4352	MSKCC	GRCh37	1	43814667	43814667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	54	409	0	ENST00000372470.3:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000372470	NM_005373.2	488	Gag/Aag																																																																														
MDM2	4193	MSKCC	GRCh37	12	69210676	69210676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	57	507	0	ENST00000462284.1:c.259C>G	p.Leu87Val	p.L87V	ENST00000462284	NM_002392.5	87	Ctt/Gtt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11135021	11135021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	81	827	0	ENST00000344626.4:c.2988C>G	p.Ile996Met	p.I996M	ENST00000344626	NM_003072.3	996	atC/atG																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530128	212530128	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	41	420	0	ENST00000342788.4:c.1791A>C	p.Leu597Phe	p.L597F	ENST00000342788	NM_005235.2	597	ttA/ttC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295214	1295214	+	upstream_gene_variant	5'Flank	SNP	T	T	G			P-0033364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	11	285	1				ENST00000310581	NM_198253.2																																																																																
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	127	495	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	146	392	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	443491	443491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	97	420	0	ENST00000399788.2:c.1406C>T	p.Pro469Leu	p.P469L	ENST00000399788	NM_001042603.1	469	cCg/cTg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273884	18273884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201531496		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	192	630	0	ENST00000222254.8:c.1217G>A	p.Arg406His	p.R406H	ENST00000222254	NM_005027.3	406	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	207	602	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	171	662	2	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457390	67457390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	186	544	0	ENST00000327367.4:c.364G>A	p.Val122Met	p.V122M	ENST00000327367	NM_005902.3	122	Gtg/Atg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	229	664	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2106225	2106225	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147196739		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	235	686	4	ENST00000219476.3:c.628G>A	p.Ala210Thr	p.A210T	ENST00000219476	NM_000548.3	210	Gcg/Acg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	117	502	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191005	185191005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	202	751	0	ENST00000265026.3:c.1886C>T	p.Pro629Leu	p.P629L	ENST00000265026	NM_004721.4	629	cCt/cTt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310820	123310820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	246	570	1	ENST00000358487.5:c.608G>A	p.Arg203His	p.R203H	ENST00000358487	NM_000141.4	203	cGc/cAc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196695	67196696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	101	406	0	ENST00000312629.5:c.230dupG	p.Tyr78LeufsTer42	p.Y78Lfs*42	ENST00000312629	NM_003952.2	75	aag/aaGg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	46	465	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638918	176638918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	113	496	1	ENST00000439151.2:c.3518G>A	p.Arg1173His	p.R1173H	ENST00000439151	NM_022455.4	1173	cGc/cAc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138198389	138198389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	88	279	0	ENST00000237289.4:c.982G>A	p.Ala328Thr	p.A328T	ENST00000237289	NM_001270507.1	328	Gca/Aca																																																																														
ATM	472	MSKCC	GRCh37	11	108216596	108216596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	36	405	1	ENST00000278616.4:c.8545C>T	p.Arg2849Ter	p.R2849*	ENST00000278616	NM_000051.3	2849	Cga/Tga																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504513	103504513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140917545		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	24	308	0	ENST00000355739.4:c.134G>A	p.Arg45His	p.R45H	ENST00000355739	NM_000123.3	45	cGc/cAc																																																																														
INSR	3643	MSKCC	GRCh37	19	7122735	7122735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	256	682	0	ENST00000302850.5:c.3419C>T	p.Ala1140Val	p.A1140V	ENST00000302850	NM_000208.2	1140	gCg/gTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246486	10246486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	207	594	1	ENST00000340748.4:c.4651C>T	p.Arg1551Trp	p.R1551W	ENST00000340748		1551	Cgg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299832	15299832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	244	679	0	ENST00000263388.2:c.1346G>A	p.Arg449His	p.R449H	ENST00000263388	NM_000435.2	449	cGc/cAc																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251991	8251991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	242	658	1	ENST00000335790.3:c.86G>A	p.Arg29His	p.R29H	ENST00000335790	NM_002315.2	29	cGc/cAc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752375	57752375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	28	394	0	ENST00000274289.3:c.1198C>T	p.His400Tyr	p.H400Y	ENST00000274289	NM_006622.3	400	Cat/Tat																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001366	29001366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	97	301	0	ENST00000282397.4:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000282397	NM_002019.4	456	Gca/Aca																																																																														
NF1	4763	MSKCC	GRCh37	17	29556292	29556292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	183	540	1	ENST00000358273.4:c.2659G>A	p.Ala887Thr	p.A887T	ENST00000358273	NM_001042492.2	887	Gca/Aca																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	59	444	2	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	256	739	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	24	588	2	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt																																																																														
INSR	3643	MSKCC	GRCh37	19	7128960	7128960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139944962		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	15	322	0	ENST00000302850.5:c.2848G>A	p.Val950Ile	p.V950I	ENST00000302850	NM_000208.2	950	Gtc/Atc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	124	319	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979563	7979563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	151	522	1	ENST00000319144.4:c.1462C>T	p.Arg488Cys	p.R488C	ENST00000319144	NM_001139.2	488	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	30	597	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935633	13935633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	165	413	1	ENST00000405192.2:c.1223G>A	p.Arg408His	p.R408H	ENST00000405192	NM_001163147.1	408	cGt/cAt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155627	56155627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	104	300	1	ENST00000399503.3:c.719C>T	p.Ala240Val	p.A240V	ENST00000399503	NM_005921.1	240	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	128	548	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246522	10246522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	168	494	0	ENST00000340748.4:c.4615G>A	p.Val1539Met	p.V1539M	ENST00000340748		1539	Gtg/Atg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	226	613	3	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																														
PAK1	5058	MSKCC	GRCh37	11	77066821	77066821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	156	384	0	ENST00000356341.3:c.664A>G	p.Ile222Val	p.I222V	ENST00000356341	NM_002576.4	222	Att/Gtt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1805473	1805473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188723332		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	249	651	0	ENST00000260795.2:c.985G>A	p.Val329Ile	p.V329I	ENST00000260795		329	Gtc/Atc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209514	98209514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	111	520	1	ENST00000331920.6:c.4024C>T	p.Arg1342Cys	p.R1342C	ENST00000331920	NM_000264.3	1342	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	12	108	0	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	44	304	1	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
POLE	5426	MSKCC	GRCh37	12	133219579	133219579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	147	431	0	ENST00000320574.5:c.4555C>T	p.Arg1519Cys	p.R1519C	ENST00000320574	NM_006231.2	1519	Cgc/Tgc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	41	221	1	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	202	576	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65323452	65323452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	150	455	0	ENST00000342505.4:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000342505	NM_002227.2	449	Gcc/Acc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	115	391	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132552	11132552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	216	653	2	ENST00000344626.4:c.2768C>T	p.Ala923Val	p.A923V	ENST00000344626	NM_003072.3	923	gCg/gTg																																																																														
SYK	6850	MSKCC	GRCh37	9	93606304	93606304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	172	622	2	ENST00000375746.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000375746	NM_001174167.1	42	Cgc/Tgc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787731	135787731	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151309813		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	54	519	0	ENST00000298552.3:c.851G>A	p.Arg284His	p.R284H	ENST00000298552	NM_001162426.1	284	cGc/cAc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469038	25469038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	230	678	0	ENST00000264709.3:c.1420C>T	p.Arg474Cys	p.R474C	ENST00000264709	NM_175629.2	474	Cgc/Tgc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911520	134911520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs756316035		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	183	481	0	ENST00000398015.3:c.1985G>A	p.Arg662His	p.R662H	ENST00000398015	NM_004441.4	662	cGt/cAt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979661	7979661	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	58	292	0	ENST00000319144.4:c.1364G>A	p.Gly455Asp	p.G455D	ENST00000319144	NM_001139.2	455	gGc/gAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135777085	135777085	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	180	470	2	ENST00000298552.3:c.2393C>T	p.Thr798Met	p.T798M	ENST00000298552	NM_001162426.1	798	aCg/aTg																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	76	402	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990723	7990723	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	120	537	0	ENST00000319144.4:c.38A>T	p.Asp13Val	p.D13V	ENST00000319144	NM_001139.2	13	gAc/gTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70351421	70351421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	259	347	0	ENST00000374080.3:c.4069C>T	p.Arg1357Cys	p.R1357C	ENST00000374080		1357	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638555	176638555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	152	557	1	ENST00000439151.2:c.3155G>A	p.Arg1052His	p.R1052H	ENST00000439151	NM_022455.4	1052	cGc/cAc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729271	41729271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	132	406	0	ENST00000242208.4:c.1258G>A	p.Val420Met	p.V420M	ENST00000242208	NM_002192.2	420	Gtg/Atg																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	90	457	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
PARP1	142	MSKCC	GRCh37	1	226567646	226567647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1159330096		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	174	534	4	ENST00000366794.5:c.1519dup	p.Ser507LysfsTer14	p.S507Kfs*14	ENST00000366794	NM_001618.3	507	agc/aAgc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	25	248	1	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																														
ATM	472	MSKCC	GRCh37	11	108213967	108213967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	44	319	0	ENST00000278616.4:c.8287C>T	p.Arg2763Ter	p.R2763*	ENST00000278616	NM_000051.3	2763	Cga/Tga																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94203791	94203791	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190142346		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	12	202	0	ENST00000323929.3:c.863G>A	p.Arg288His	p.R288H	ENST00000323929	NM_005591.3	288	cGt/cAt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858253	59858253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	134	538	0	ENST00000259008.2:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000259008	NM_032043.2	581	cGa/cAa																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582302	119582302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	144	426	2	ENST00000316626.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000316626		367	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	417080	417080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	129	338	1	ENST00000399788.2:c.3470G>A	p.Arg1157His	p.R1157H	ENST00000399788	NM_001042603.1	1157	cGc/cAc																																																																														
IRF4	3662	MSKCC	GRCh37	6	393199	393199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	45	432	0	ENST00000380956.4:c.47C>T	p.Ala16Val	p.A16V	ENST00000380956	NM_001195286.1	16	gCg/gTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779578	3779578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	219	918	1	ENST00000262367.5:c.5470G>A	p.Ala1824Thr	p.A1824T	ENST00000262367	NM_004380.2	1824	Gcc/Acc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	41	524	1	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																														
FYN	2534	MSKCC	GRCh37	6	111983115	111983115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	123	455	0	ENST00000368678.4:c.1432C>T	p.Arg478Ter	p.R478*	ENST00000368678		478	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15935669	15935669	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	155	363	0	ENST00000268712.3:c.7264C>T	p.Arg2422Ter	p.R2422*	ENST00000268712	NM_006311.3	2422	Cga/Tga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227948	53227948	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	181	347	0	ENST00000375401.3:c.2366G>A	p.Arg789His	p.R789H	ENST00000375401	NM_004187.3	789	cGc/cAc																																																																														
CASP8	841	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	142	586	1	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98240450	98240450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	91	371	0	ENST00000331920.6:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000331920	NM_000264.3	412	Gca/Aca																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806569	1806569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182935140		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	133	670	0	ENST00000260795.2:c.1285G>A	p.Ala429Thr	p.A429T	ENST00000260795		429	Gcg/Acg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239843	98239843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	187	575	1	ENST00000331920.6:c.1489G>A	p.Ala497Thr	p.A497T	ENST00000331920	NM_000264.3	497	Gct/Act																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272105	15272105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	98	491	0	ENST00000263388.2:c.6334G>A	p.Gly2112Ser	p.G2112S	ENST00000263388	NM_000435.2	2112	Ggt/Agt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	85	321	0	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575133	48575133	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	56	374	0	ENST00000342988.3:c.330del	p.Lys110AsnfsTer12	p.K110Nfs*12	ENST00000342988	NM_005359.5	109	ctA/ct																																																																														
BLM	641	MSKCC	GRCh37	15	91312426	91312426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55880859		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	107	501	0	ENST00000355112.3:c.2371C>T	p.Arg791Cys	p.R791C	ENST00000355112	NM_000057.2	791	Cgt/Tgt																																																																														
AXL	558	MSKCC	GRCh37	19	41765753	41765753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	101	429	3	ENST00000301178.4:c.2629G>A	p.Ala877Thr	p.A877T	ENST00000301178	NM_021913.4	877	Gct/Act																																																																														
BLM	641	MSKCC	GRCh37	15	91306337	91306337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	81	415	1	ENST00000355112.3:c.2024C>T	p.Ala675Val	p.A675V	ENST00000355112	NM_000057.2	675	gCg/gTg																																																																														
ALK	238	MSKCC	GRCh37	2	30143351	30143351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	30	612	0	ENST00000389048.3:c.175G>A	p.Val59Met	p.V59M	ENST00000389048	NM_004304.4	59	Gtg/Atg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149516607	149516607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148272095		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	197	630	3	ENST00000261799.4:c.4C>T	p.Arg2Trp	p.R2W	ENST00000261799	NM_002609.3	2	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579365	7579365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	231	608	0	ENST00000269305.4:c.322G>A	p.Gly108Ser	p.G108S	ENST00000269305	NM_001126112.2	108	Ggt/Agt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729551	41729551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	175	593	0	ENST00000242208.4:c.978C>A	p.Phe326Leu	p.F326L	ENST00000242208	NM_002192.2	326	ttC/ttA																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274568	198274568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	91	507	0	ENST00000335508.6:c.830C>T	p.Ala277Val	p.A277V	ENST00000335508	NM_012433.2	277	gCg/gTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518190	8518190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	148	366	0	ENST00000356435.5:c.1201C>T	p.Arg401Trp	p.R401W	ENST00000356435		401	Cgg/Tgg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24143232	24143232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	244	595	4	ENST00000263121.7:c.464G>A	p.Arg155His	p.R155H	ENST00000263121	NM_003073.3	155	cGc/cAc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36938239	36938239	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199991273		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	259	695	1	ENST00000361632.4:c.722C>T	p.Ala241Val	p.A241V	ENST00000361632		241	gCg/gTg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265314	152265314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	79	260	0	ENST00000206249.3:c.767G>A	p.Arg256Gln	p.R256Q	ENST00000206249	NM_000125.3	256	cGa/cAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467731	66467731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	111	394	0	ENST00000273854.3:c.538G>A	p.Asp180Asn	p.D180N	ENST00000273854	NM_004439.5	180	Gat/Aat																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739871	46739871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	105	389	0	ENST00000371975.4:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000371975	NM_003579.3	558	Cgc/Tgc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003202	143003202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	34	404	0	ENST00000262992.4:c.2624C>T	p.Ala875Val	p.A875V	ENST00000262992	NM_001101669.1	875	gCg/gTg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350626	15350626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	227	744	1	ENST00000263377.2:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000263377	NM_058243.2	1097	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509954	187509954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	46	361	1	ENST00000441802.2:c.13559C>T	p.Pro4520Leu	p.P4520L	ENST00000441802	NM_005245.3	4520	cCg/cTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123263394	123263394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	174	412	0	ENST00000358487.5:c.1349G>A	p.Arg450His	p.R450H	ENST00000358487	NM_000141.4	450	cGc/cAc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120794732	120794732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	196	595	2	ENST00000257552.2:c.625G>A	p.Ala209Thr	p.A209T	ENST00000257552	NM_002442.3	209	Gcc/Acc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	181	715	8	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	123	563	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107749	30107749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	141	530	0	ENST00000331968.5:c.931C>T	p.Arg311Cys	p.R311C	ENST00000331968	NM_002742.2	311	Cgt/Tgt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144149	11144149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	67	522	1	ENST00000344626.4:c.3730C>T	p.Arg1244Cys	p.R1244C	ENST00000344626	NM_003072.3	1244	Cgc/Tgc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038147	128038147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144012336		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	156	436	0	ENST00000285398.2:c.1403C>T	p.Ala468Val	p.A468V	ENST00000285398	NM_000122.1	468	gCg/gTg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120541714	120541714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	211	613	0	ENST00000229340.5:c.143G>A	p.Arg48Gln	p.R48Q	ENST00000229340	NM_006861.6	48	cGg/cAg																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538990	23538990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	143	543	0	ENST00000380871.4:c.449C>T	p.Ser150Leu	p.S150L	ENST00000380871	NM_006167.3	150	tCg/tTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	148	797	3	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433507	138433507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	76	474	0	ENST00000289153.2:c.1105G>A	p.Val369Ile	p.V369I	ENST00000289153	NM_006219.2	369	Gta/Ata																																																																														
TSC2	7249	MSKCC	GRCh37	16	2108787	2108788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	235	725	0	ENST00000219476.3:c.894dup	p.Val299CysfsTer39	p.V299Cfs*39	ENST00000219476	NM_000548.3	296	-/T																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420745	49420745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	172	561	0	ENST00000301067.7:c.15004C>T	p.Arg5002Trp	p.R5002W	ENST00000301067	NM_003482.3	5002	Cgg/Tgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391832	139391832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	174	704	2	ENST00000277541.6:c.6359G>A	p.Arg2120His	p.R2120H	ENST00000277541	NM_017617.3	2120	cGc/cAc																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56787287	56787287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	98	560	1	ENST00000337432.4:c.773G>A	p.Arg258His	p.R258H	ENST00000337432	NM_058216.2	258	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112176555	112176555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	52	256	0	ENST00000257430.4:c.5264C>T	p.Ala1755Val	p.A1755V	ENST00000257430	NM_000038.5	1755	gCg/gTg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707684	176707684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	151	404	1	ENST00000439151.2:c.5741G>A	p.Arg1914His	p.R1914H	ENST00000439151	NM_022455.4	1914	cGc/cAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373313	118373313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	33	401	3	ENST00000534358.1:c.6706G>A	p.Ala2236Thr	p.A2236T	ENST00000534358	NM_005933.3	2236	Gct/Act																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121256	29121256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	130	708	0	ENST00000328354.6:c.419G>T	p.Ser140Ile	p.S140I	ENST00000328354	NM_007194.3	140	aGc/aTc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354324	354324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200716081		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	68	584	0	ENST00000262320.3:c.1234C>T	p.Arg412Trp	p.R412W	ENST00000262320	NM_003502.3	412	Cgg/Tgg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589313	67589313	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	21	190	0	ENST00000274335.5:c.1299+2T>C		p.X433_splice	ENST00000274335		433																																																																															
FLT1	2321	MSKCC	GRCh37	13	29001431	29001431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	112	235	1	ENST00000282397.4:c.1301C>T	p.Ala434Val	p.A434V	ENST00000282397	NM_002019.4	434	gCc/gTc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128222	30128222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	182	608	0	ENST00000263025.4:c.1010C>T	p.Thr337Met	p.T337M	ENST00000263025	NM_002746.2	337	aCg/aTg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524475	44524475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	47	279	0	ENST00000291552.4:c.82C>T	p.Arg28Cys	p.R28C	ENST00000291552	NM_006758.2	28	Cgt/Tgt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226589	2226589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	150	697	4	ENST00000398665.3:c.4069C>T	p.Arg1357Cys	p.R1357C	ENST00000398665	NM_032482.2	1357	Cgc/Tgc																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248579	8248579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	221	678	1	ENST00000335790.3:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000335790	NM_002315.2	103	cGg/cAg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44937723	44937723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	84	273	0	ENST00000377967.4:c.2911C>T	p.Arg971Cys	p.R971C	ENST00000377967	NM_021140.2	971	Cgt/Tgt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14015969	14015969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	63	270	0	ENST00000311895.7:c.289C>T	p.Arg97Cys	p.R97C	ENST00000311895	NM_005236.2	97	Cgc/Tgc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349036	70349036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	203	286	0	ENST00000374080.3:c.3548C>T	p.Pro1183Leu	p.P1183L	ENST00000374080		1183	cCg/cTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259533	55259533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	139	495	0	ENST00000275493.2:c.2591C>T	p.Ala864Val	p.A864V	ENST00000275493	NM_005228.3	864	gCg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	101	397	0	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																														
ERF	2077	MSKCC	GRCh37	19	42753276	42753276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	98	782	1	ENST00000222329.4:c.988G>A	p.Ala330Thr	p.A330T	ENST00000222329	NM_006494.2	330	Gcc/Acc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599874	10599874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	240	655	0	ENST00000171111.5:c.1702G>A	p.Val568Ile	p.V568I	ENST00000171111	NM_203500.1	568	Gtc/Atc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213611	36213611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	265	711	5	ENST00000222270.7:c.2713G>A	p.Ala905Thr	p.A905T	ENST00000222270	NM_014727.1	905	Gcc/Acc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169092	32169092	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189264181		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	187	614	1	ENST00000375023.3:c.3941C>T	p.Ala1314Val	p.A1314V	ENST00000375023	NM_004557.3	1314	gCc/gTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639874	3639874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	215	608	0	ENST00000294008.3:c.3765G>A	p.Trp1255Ter	p.W1255*	ENST00000294008	NM_032444.2	1255	tgG/tgA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201693	66201693	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142359231		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	117	494	0	ENST00000273854.3:c.2809C>T	p.Arg937Cys	p.R937C	ENST00000273854	NM_004439.5	937	Cgt/Tgt																																																																														
SMO	6608	MSKCC	GRCh37	7	128845485	128845485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	274	758	2	ENST00000249373.3:c.782G>A	p.Arg261His	p.R261H	ENST00000249373	NM_005631.4	261	cGc/cAc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121437361	121437361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	241	701	3	ENST00000257555.6:c.1699G>A	p.Val567Ile	p.V567I	ENST00000257555		567	Gtc/Atc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31379461	31379461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	159	555	0	ENST00000328111.2:c.868G>A	p.Ala290Thr	p.A290T	ENST00000328111	NM_006892.3	290	Gcc/Acc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435129	110435129	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	213	592	3	ENST00000375856.3:c.3272del	p.Pro1091ArgfsTer15	p.P1091Rfs*15	ENST00000375856	NM_003749.2	1091	cCg/cg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047947	180047947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	239	678	1	ENST00000261937.6:c.2228C>T	p.Ala743Val	p.A743V	ENST00000261937	NM_182925.4	743	gCg/gTg																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1978301	1978301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	244	678	0	ENST00000382891.5:c.3721G>A	p.Glu1241Lys	p.E1241K	ENST00000382891	NM_133335.3	1241	Gag/Aag																																																																														
SESN3	143686	MSKCC	GRCh37	11	94924617	94924617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	167	566	0	ENST00000536441.1:c.293G>A	p.Arg98His	p.R98H	ENST00000536441	NM_144665.3	98	cGc/cAc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964143	28964143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	93	394	0	ENST00000282397.4:c.1759G>A	p.Val587Ile	p.V587I	ENST00000282397	NM_002019.4	587	Gtt/Att																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739012	145739012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	145	556	0	ENST00000428558.2:c.2143C>T	p.Arg715Trp	p.R715W	ENST00000428558	NM_004260.3	715	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261368	16261368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	111	522	3	ENST00000375759.3:c.8633C>T	p.Ala2878Val	p.A2878V	ENST00000375759	NM_015001.2	2878	gCg/gTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376665	8376665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	164	559	0	ENST00000356435.5:c.4448C>T	p.Thr1483Met	p.T1483M	ENST00000356435		1483	aCg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845523	151845524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	62	670	0	ENST00000262189.6:c.13488dup	p.Lys4497Ter	p.K4497*	ENST00000262189	NM_170606.2	4496	-/T																																																																														
ARAF	369	MSKCC	GRCh37	X	47422455	47422455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	198	252	0	ENST00000377045.4:c.89G>A	p.Arg30His	p.R30H	ENST00000377045	NM_001654.4	30	cGc/cAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190344	32190344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146490163		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	99	592	0	ENST00000375023.3:c.395G>A	p.Arg132His	p.R132H	ENST00000375023	NM_004557.3	132	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923807	72923807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	181	582	1	ENST00000268489.5:c.3271G>A	p.Val1091Ile	p.V1091I	ENST00000268489	NM_006885.3	1091	Gtt/Att																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986925	36986925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	212	481	1	ENST00000354822.5:c.764C>T	p.Ala255Val	p.A255V	ENST00000354822	NM_001079668.2	255	gCg/gTg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128015296	128015296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	127	366	0	ENST00000285398.2:c.2225G>A	p.Arg742Gln	p.R742Q	ENST00000285398	NM_000122.1	742	cGg/cAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245225	46245225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	65	399	1	ENST00000334344.6:c.3319G>A	p.Ala1107Thr	p.A1107T	ENST00000334344	NM_152641.2	1107	Gca/Aca																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99193476	99193476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	230	622	0	ENST00000074304.5:c.2671C>T	p.Arg891Trp	p.R891W	ENST00000074304	NM_001134224.1	891	Cgg/Tgg																																																																														
RECQL	5965	MSKCC	GRCh37	12	21630862	21630862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202110155		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	106	496	0	ENST00000421138.2:c.742G>A	p.Ala248Thr	p.A248T	ENST00000421138		248	Gca/Aca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521972	157521972	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	56	355	0	ENST00000346085.5:c.4244A>G	p.Asp1415Gly	p.D1415G	ENST00000346085	NM_020732.3	1415	gAc/gGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415846	49415846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	97	450	0	ENST00000301067.7:c.16501C>T	p.Arg5501Ter	p.R5501*	ENST00000301067	NM_003482.3	5501	Cga/Tga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288743	33288743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	164	425	1	ENST00000374542.5:c.809G>A	p.Arg270His	p.R270H	ENST00000374542	NM_001141970.1	270	cGc/cAc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128051273	128051273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	99	517	0	ENST00000285398.2:c.50G>A	p.Arg17Gln	p.R17Q	ENST00000285398	NM_000122.1	17	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49439750	49439750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200119692		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	194	489	0	ENST00000301067.7:c.4694C>T	p.Ala1565Val	p.A1565V	ENST00000301067	NM_003482.3	1565	gCg/gTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229336	36229336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	184	510	0	ENST00000222270.7:c.8026G>A	p.Ala2676Thr	p.A2676T	ENST00000222270	NM_014727.1	2676	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845190	151845190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	157	484	0	ENST00000262189.6:c.13822C>T	p.Arg4608Cys	p.R4608C	ENST00000262189	NM_170606.2	4608	Cgc/Tgc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40353823	40353823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	247	533	2	ENST00000293328.3:c.2297C>T	p.Ala766Val	p.A766V	ENST00000293328	NM_012448.3	766	gCg/gTg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634731	158634731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	76	395	0	ENST00000263640.3:c.455G>A	p.Arg152His	p.R152H	ENST00000263640	NM_001105.4	152	cGc/cAc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316075	14316075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	16	367	0	ENST00000256196.4:c.350G>A	p.Arg117His	p.R117H	ENST00000256196		117	cGt/cAt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435696	149435696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	129	575	0	ENST00000286301.3:c.2447G>A	p.Arg816His	p.R816H	ENST00000286301	NM_005211.3	816	cGc/cAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136051	64136051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	204	567	1	ENST00000334205.4:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000334205	NM_003942.2	438	Gca/Aca																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40442026	40442026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	203	687	1	ENST00000345506.4:c.271G>A	p.Ala91Thr	p.A91T	ENST00000345506	NM_003152.3	91	Gcc/Acc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902635	1902635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	206	613	0	ENST00000382891.5:c.254G>A	p.Arg85Gln	p.R85Q	ENST00000382891	NM_133335.3	85	cGg/cAg																																																																														
E2F3	1871	MSKCC	GRCh37	6	20488470	20488470	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147333935		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	52	308	0	ENST00000346618.3:c.1126G>A	p.Ala376Thr	p.A376T	ENST00000346618	NM_001949.4	376	Gct/Act																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431115	49431115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	174	608	1	ENST00000301067.7:c.10024C>T	p.Arg3342Cys	p.R3342C	ENST00000301067	NM_003482.3	3342	Cgc/Tgc																																																																														
PARK2	5071	MSKCC	GRCh37	6	162206851	162206851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	122	346	0	ENST00000366898.1:c.824G>A	p.Arg275Gln	p.R275Q	ENST00000366898	NM_004562.2	275	cGg/cAg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141549486	141549486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	161	432	1	ENST00000220592.5:c.2102G>A	p.Gly701Glu	p.G701E	ENST00000220592	NM_012154.3	701	gGg/gAg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082455	16082455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	225	661	2	ENST00000281043.3:c.269G>A	p.Ser90Asn	p.S90N	ENST00000281043	NM_005378.4	90	aGc/aAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166874	32166874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	244	678	0	ENST00000375023.3:c.4364C>T	p.Ala1455Val	p.A1455V	ENST00000375023	NM_004557.3	1455	gCc/gTc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590452	67590452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	10	167	0	ENST00000274335.5:c.1514G>A	p.Ser505Asn	p.S505N	ENST00000274335		505	aGc/aAc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9770555	9770555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	247	578	0	ENST00000377346.4:c.42G>T	p.Lys14Asn	p.K14N	ENST00000377346	NM_005026.3	14	aaG/aaT																																																																														
MTOR	2475	MSKCC	GRCh37	1	11199670	11199670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	199	619	1	ENST00000361445.4:c.4918C>T	p.Arg1640Trp	p.R1640W	ENST00000361445	NM_004958.3	1640	Cgg/Tgg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11264747	11264747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	195	563	0	ENST00000361445.4:c.3815C>T	p.Ala1272Val	p.A1272V	ENST00000361445	NM_004958.3	1272	gCc/gTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11270923	11270923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	77	452	0	ENST00000361445.4:c.3602G>A	p.Arg1201Gln	p.R1201Q	ENST00000361445	NM_004958.3	1201	cGa/cAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298093	11298093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	42	393	0	ENST00000361445.4:c.2015G>A	p.Arg672His	p.R672H	ENST00000361445	NM_004958.3	672	cGc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11303178	11303178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	128	414	0	ENST00000361445.4:c.1405G>A	p.Ala469Thr	p.A469T	ENST00000361445	NM_004958.3	469	Gcc/Acc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258227	16258227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	57	445	0	ENST00000375759.3:c.5492C>T	p.Ala1831Val	p.A1831V	ENST00000375759	NM_015001.2	1831	gCt/gTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259270	16259270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	73	286	0	ENST00000375759.3:c.6535G>A	p.Ala2179Thr	p.A2179T	ENST00000375759	NM_015001.2	2179	Gca/Aca																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261983	16261983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	44	441	0	ENST00000375759.3:c.9248G>T	p.Ser3083Ile	p.S3083I	ENST00000375759	NM_015001.2	3083	aGc/aTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262442	16262442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	16	249	0	ENST00000375759.3:c.9707C>T	p.Thr3236Ile	p.T3236I	ENST00000375759	NM_015001.2	3236	aCa/aTa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16263659	16263659	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	120	360	0	ENST00000375759.3:c.10028G>A	p.Gly3343Asp	p.G3343D	ENST00000375759	NM_015001.2	3343	gGc/gAc																																																																														
MPL	4352	MSKCC	GRCh37	1	43818396	43818396	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	169	631	0	ENST00000372470.3:c.1861A>G	p.Ile621Val	p.I621V	ENST00000372470	NM_005373.2	621	Att/Gtt																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733478	85733478	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	99	415	0	ENST00000370580.1:c.534A>T	p.Glu178Asp	p.E178D	ENST00000370580	NM_003921.4	178	gaA/gaT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466402	120466402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	153	516	0	ENST00000256646.2:c.4717C>T	p.Leu1573Phe	p.L1573F	ENST00000256646	NM_024408.3	1573	Ctc/Ttc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120483182	120483182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	34	290	0	ENST00000256646.2:c.3179G>A	p.Cys1060Tyr	p.C1060Y	ENST00000256646	NM_024408.3	1060	tGt/tAt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120483322	120483322	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	97	343	0	ENST00000256646.2:c.3039C>A	p.Cys1013Ter	p.C1013*	ENST00000256646	NM_024408.3	1013	tgC/tgA																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120496192	120496192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	97	562	0	ENST00000256646.2:c.2339G>T	p.Arg780Met	p.R780M	ENST00000256646	NM_024408.3	780	aGg/aTg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724547	162724547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	48	467	2	ENST00000367921.3:c.319G>A	p.Ala107Thr	p.A107T	ENST00000367921	NM_006182.2	107	Gca/Aca																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731095	162731095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	70	504	0	ENST00000367921.3:c.950C>T	p.Ala317Val	p.A317V	ENST00000367921	NM_006182.2	317	gCc/gTc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193117019	193117019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	27	315	0	ENST00000367435.3:c.752C>T	p.Ala251Val	p.A251V	ENST00000367435	NM_024529.4	251	gCa/gTa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193205388	193205388	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	51	396	0	ENST00000367435.3:c.1319A>G	p.Asp440Gly	p.D440G	ENST00000367435	NM_024529.4	440	gAc/gGc																																																																														
PARP1	142	MSKCC	GRCh37	1	226589935	226589935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	157	491	0	ENST00000366794.5:c.266C>T	p.Ala89Val	p.A89V	ENST00000366794	NM_001618.3	89	gCg/gTg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104389886	104389886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	155	392	1	ENST00000369902.3:c.1429G>A	p.Val477Met	p.V477M	ENST00000369902	NM_016169.3	477	Gtg/Atg																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724281	112724281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	125	385	0	ENST00000369452.4:c.165G>T	p.Lys55Asn	p.K55N	ENST00000369452	NM_007373.3	55	aaG/aaT																																																																														
HRAS	3265	MSKCC	GRCh37	11	532676	532676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	147	816	0	ENST00000311189.7:c.530G>A	p.Ser177Asn	p.S177N	ENST00000311189		177	aGt/aAt																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316397	14316397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	22	439	0	ENST00000256196.4:c.208G>T	p.Ala70Ser	p.A70S	ENST00000256196		70	Gca/Tca																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196682	67196682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	132	433	0	ENST00000312629.5:c.211C>T	p.Arg71Cys	p.R71C	ENST00000312629	NM_003952.2	71	Cgt/Tgt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941313	71941313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	56	546	1	ENST00000298229.2:c.1088G>A	p.Arg363His	p.R363H	ENST00000298229	NM_001567.3	363	cGc/cAc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77103416	77103417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	99	369	0	ENST00000356341.3:c.149dup	p.Lys51GlufsTer13	p.K51Efs*13	ENST00000356341	NM_002576.4	50	aag/aaAg																																																																														
ATM	472	MSKCC	GRCh37	11	108198403	108198403	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	31	341	0	ENST00000278616.4:c.7007A>G	p.Glu2336Gly	p.E2336G	ENST00000278616	NM_000051.3	2336	gAa/gGa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118368741	118368741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	98	541	0	ENST00000534358.1:c.5755G>A	p.Gly1919Arg	p.G1919R	ENST00000534358	NM_005933.3	1919	Gga/Aga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374115	118374115	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs143525945		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	27	363	0	ENST00000534358.1:c.7508C>A	p.Ala2503Asp	p.A2503D	ENST00000534358	NM_005933.3	2503	gCt/gAt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125513789	125513789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	87	498	0	ENST00000428830.2:c.917C>T	p.Ala306Val	p.A306V	ENST00000428830	NM_001114121.2	306	gCt/gTt																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022832	12022832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	151	482	0	ENST00000396373.4:c.938C>T	p.Ala313Val	p.A313V	ENST00000396373	NM_001987.4	313	gCt/gTt																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870822	12870822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	16	142	1	ENST00000228872.4:c.49G>A	p.Asp17Asn	p.D17N	ENST00000228872	NM_004064.3	17	Gac/Aac																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499767	18499767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	70	308	0	ENST00000266497.5:c.1622A>G	p.His541Arg	p.H541R	ENST00000266497		541	cAc/cGc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21630754	21630754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	21	338	0	ENST00000421138.2:c.850C>T	p.Pro284Ser	p.P284S	ENST00000421138		284	Cca/Tca																																																																														
RECQL	5965	MSKCC	GRCh37	12	21636309	21636309	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	72	355	1	ENST00000421138.2:c.700+1G>A		p.X234_splice	ENST00000421138		234																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427056	49427056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	118	491	0	ENST00000301067.7:c.11432A>T	p.Gln3811Leu	p.Q3811L	ENST00000301067	NM_003482.3	3811	cAg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433847	49433847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	204	846	0	ENST00000301067.7:c.7706G>A	p.Gly2569Asp	p.G2569D	ENST00000301067	NM_003482.3	2569	gGc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435980	49435980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	218	621	0	ENST00000301067.7:c.6001C>T	p.Arg2001Trp	p.R2001W	ENST00000301067	NM_003482.3	2001	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487277	56487278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	62	518	2	ENST00000267101.3:c.1428dup	p.Pro477AlafsTer11	p.P477Afs*11	ENST00000267101	NM_001982.3	475	cgg/cGgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495610	56495610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	156	457	1	ENST00000267101.3:c.3800G>A	p.Arg1267Gln	p.R1267Q	ENST00000267101	NM_001982.3	1267	cGa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133202900	133202900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	139	458	0	ENST00000320574.5:c.6334C>A	p.Leu2112Met	p.L2112M	ENST00000320574	NM_006231.2	2112	Ctg/Atg																																																																														
POLE	5426	MSKCC	GRCh37	12	133215748	133215748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141519273		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	53	542	0	ENST00000320574.5:c.5515C>T	p.Arg1839Cys	p.R1839C	ENST00000320574	NM_006231.2	1839	Cgc/Tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133219125	133219125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	193	578	0	ENST00000320574.5:c.4919A>G	p.Asp1640Gly	p.D1640G	ENST00000320574	NM_006231.2	1640	gAc/gGc																																																																														
POLE	5426	MSKCC	GRCh37	12	133233748	133233748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	192	525	0	ENST00000320574.5:c.3556C>T	p.Leu1186Phe	p.L1186F	ENST00000320574	NM_006231.2	1186	Ctc/Ttc																																																																														
POLE	5426	MSKCC	GRCh37	12	133249829	133249829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	147	407	2	ENST00000320574.5:c.1394C>T	p.Ala465Val	p.A465V	ENST00000320574	NM_006231.2	465	gCc/gTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28885802	28885802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	98	531	0	ENST00000282397.4:c.3560C>A	p.Pro1187His	p.P1187H	ENST00000282397	NM_002019.4	1187	cCt/cAt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964102	28964102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	92	487	0	ENST00000282397.4:c.1800G>A	p.Met600Ile	p.M600I	ENST00000282397	NM_002019.4	600	atG/atA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906627	32906627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	37	341	0	ENST00000380152.3:c.1012G>A	p.Ala338Thr	p.A338T	ENST00000380152		338	Gct/Act																																																																														
RB1	5925	MSKCC	GRCh37	13	48942682	48942682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	49	269	0	ENST00000267163.4:c.1069C>T	p.Pro357Ser	p.P357S	ENST00000267163	NM_000321.2	357	Cca/Tca																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514012	103514013	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	76	356	0	ENST00000355739.4:c.830_831del	p.Glu277ValfsTer7	p.E277Vfs*7	ENST00000355739	NM_000123.3	276	gtAGag/gtag																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871619	35871619	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201191831		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	95	312	0	ENST00000216797.5:c.887C>T	p.Thr296Met	p.T296M	ENST00000216797	NM_020529.2	296	aCg/aTg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061069	38061069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	23	192	0	ENST00000250448.2:c.920C>T	p.Ser307Leu	p.S307L	ENST00000250448	NM_004496.3	307	tCg/tTg																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675040	40675040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	180	501	0	ENST00000249776.8:c.4G>A	p.Ala2Thr	p.A2T	ENST00000249776	NM_033286.3	2	Gcg/Acg																																																																														
RAD51	5888	MSKCC	GRCh37	15	41011037	41011037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	203	665	1	ENST00000267868.3:c.470C>T	p.Ala157Val	p.A157V	ENST00000267868	NM_002875.4	157	gCc/gTc																																																																														
MGA	23269	MSKCC	GRCh37	15	41991060	41991060	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	50	321	0	ENST00000219905.7:c.2014-1G>T		p.X672_splice	ENST00000219905	NM_001164273.1	672																																																																															
CD276	80381	MSKCC	GRCh37	15	73994717	73994717	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	291	763	0	ENST00000318443.5:c.201G>A	p.Trp67Ter	p.W67*	ENST00000318443	NM_001024736.1	67	tgG/tgA																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680683	88680683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	229	610	1	ENST00000360948.2:c.574G>A	p.Ala192Thr	p.A192T	ENST00000360948	NM_001012338.2	192	Gct/Act																																																																														
BLM	641	MSKCC	GRCh37	15	91347432	91347433	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	79	313	0	ENST00000355112.3:c.3600dup	p.Gln1201ThrfsTer16	p.Q1201Tfs*16	ENST00000355112	NM_000057.2	1198	-/A																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250917	99250917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	156	466	1	ENST00000268035.6:c.221G>A	p.Arg74His	p.R74H	ENST00000268035	NM_000875.3	74	cGc/cAc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456341	99456341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	114	325	0	ENST00000268035.6:c.1658A>G	p.Asp553Gly	p.D553G	ENST00000268035	NM_000875.3	553	gAc/gGc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396172	396172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	142	426	0	ENST00000262320.3:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000262320	NM_003502.3	285	cGg/cAg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2100432	2100432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	179	492	0	ENST00000219476.3:c.170G>A	p.Arg57His	p.R57H	ENST00000219476	NM_000548.3	57	cGc/cAc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136814	2136814	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	100	699	0	ENST00000219476.3:c.4931A>G	p.Asp1644Gly	p.D1644G	ENST00000219476	NM_000548.3	1644	gAc/gGc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639032	3639032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	69	630	0	ENST00000294008.3:c.4607C>T	p.Ala1536Val	p.A1536V	ENST00000294008	NM_032444.2	1536	gCt/gTt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3642778	3642778	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145353518		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	158	668	0	ENST00000294008.3:c.2249C>T	p.Thr750Met	p.T750M	ENST00000294008	NM_032444.2	750	aCg/aTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658617	3658617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	222	835	0	ENST00000294008.3:c.349G>A	p.Ala117Thr	p.A117T	ENST00000294008	NM_032444.2	117	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779650	3779650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	208	708	1	ENST00000262367.5:c.5398C>T	p.Arg1800Trp	p.R1800W	ENST00000262367	NM_004380.2	1800	Cgg/Tgg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817760	3817760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	199	574	2	ENST00000262367.5:c.3211G>A	p.Ala1071Thr	p.A1071T	ENST00000262367	NM_004380.2	1071	Gcc/Acc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129408	30129408	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200652640		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	125	592	1	ENST00000263025.4:c.620C>T	p.Thr207Met	p.T207M	ENST00000263025	NM_002746.2	207	aCg/aTg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868075	56868075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	49	460	1	ENST00000308159.5:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000308159	NM_014669.4	525	Cgg/Tgg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953123	81953123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	40	275	1	ENST00000359376.3:c.2089C>T	p.Arg697Trp	p.R697W	ENST00000359376	NM_002661.3	697	Cgg/Tgg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347463	89347463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	126	519	0	ENST00000301030.4:c.5487G>T	p.Met1829Ile	p.M1829I	ENST00000301030	NM_001256183.1	1829	atG/atT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348079	89348079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	322	863	3	ENST00000301030.4:c.4871C>T	p.Ala1624Val	p.A1624V	ENST00000301030	NM_001256183.1	1624	gCg/gTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349606	89349606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	230	827	0	ENST00000301030.4:c.3344T>C	p.Ile1115Thr	p.I1115T	ENST00000301030	NM_001256183.1	1115	aTc/aCc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357036	89357036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	138	384	0	ENST00000301030.4:c.598G>A	p.Ala200Thr	p.A200T	ENST00000301030	NM_001256183.1	200	Gca/Aca																																																																														
FANCA	2175	MSKCC	GRCh37	16	89849432	89849432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	250	627	0	ENST00000389301.3:c.1549C>T	p.Arg517Trp	p.R517W	ENST00000389301	NM_000135.2	517	Cgg/Tgg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12043197	12043197	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	58	263	0	ENST00000353533.5:c.1082T>G	p.Leu361Arg	p.L361R	ENST00000353533	NM_003010.3	361	cTt/cGt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16021300	16021300	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	16	330	0	ENST00000268712.3:c.1957del	p.Met653TrpfsTer115	p.M653Wfs*115	ENST00000268712	NM_006311.3	653	Atg/tg																																																																														
NF1	4763	MSKCC	GRCh37	17	29527519	29527519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	130	603	1	ENST00000358273.4:c.968C>T	p.Ala323Val	p.A323V	ENST00000358273	NM_001042492.2	323	gCc/gTc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30264326	30264326	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	26	70	0	ENST00000322652.5:c.65del	p.Gly22GlufsTer50	p.G22Efs*50	ENST00000322652	NM_015355.2	21	Ggg/gg																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428351	33428351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181695922		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	211	660	0	ENST00000335858.7:c.436G>A	p.Gly146Arg	p.G146R	ENST00000335858	NM_133629.2	146	Ggg/Agg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627604	37627604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	31	482	1	ENST00000447079.4:c.1519G>T	p.Ala507Ser	p.A507S	ENST00000447079	NM_015083.1	507	Gca/Tca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864701	37864701	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	136	598	0	ENST00000269571.5:c.353A>G	p.Asp118Gly	p.D118G	ENST00000269571		118	gAc/gGc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453361	40453361	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs372745237		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	220	673	2	ENST00000345506.4:c.1058G>A	p.Arg353His	p.R353H	ENST00000345506	NM_003152.3	353	cGc/cAc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40855763	40855763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	123	552	0	ENST00000428826.2:c.2093C>T	p.Ala698Val	p.A698V	ENST00000428826		698	gCc/gTc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40870539	40870539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	311	570	0	ENST00000428826.2:c.864G>T	p.Glu288Asp	p.E288D	ENST00000428826		288	gaG/gaT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246305	41246305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	96	577	0	ENST00000357654.3:c.1243G>A	p.Val415Ile	p.V415I	ENST00000357654	NM_007294.3	415	Gtt/Att																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439918	56439919	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	71	511	0	ENST00000407977.2:c.673dupC	p.Arg225ProfsTer34	p.R225Pfs*34	ENST00000407977		225	cgc/cCgc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885994	59885994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	146	557	0	ENST00000259008.2:c.752G>A	p.Arg251His	p.R251H	ENST00000259008	NM_032043.2	251	cGc/cAc																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66511577	66511577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	108	298	0	ENST00000358598.2:c.37C>T	p.Arg13Cys	p.R13C	ENST00000358598	NM_212471.2	13	Cgc/Tgc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45375028	45375028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	22	356	1	ENST00000262160.6:c.815C>T	p.Ala272Val	p.A272V	ENST00000262160	NM_005901.5	272	gCa/gTa																																																																														
STK11	6794	MSKCC	GRCh37	19	1220661	1220661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	219	760	2	ENST00000326873.7:c.679G>A	p.Gly227Ser	p.G227S	ENST00000326873	NM_000455.4	227	Ggc/Agc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223370	2223370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	226	628	0	ENST00000398665.3:c.3481G>A	p.Asp1161Asn	p.D1161N	ENST00000398665	NM_032482.2	1161	Gac/Aac																																																																														
GNA11	2767	MSKCC	GRCh37	19	3113379	3113379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	238	553	0	ENST00000078429.4:c.373G>A	p.Glu125Lys	p.E125K	ENST00000078429	NM_002067.2	125	Gag/Aag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220059	5220059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	115	600	0	ENST00000357368.4:c.3656C>T	p.Thr1219Met	p.T1219M	ENST00000357368	NM_002850.3	1219	aCg/aTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10257127	10257127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	220	561	0	ENST00000340748.4:c.2746G>T	p.Asp916Tyr	p.D916Y	ENST00000340748		916	Gac/Tac																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10271059	10271059	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	82	530	2	ENST00000340748.4:c.995+1G>A		p.X332_splice	ENST00000340748		332																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10291104	10291104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	261	722	0	ENST00000340748.4:c.367G>A	p.Ala123Thr	p.A123T	ENST00000340748		123	Gca/Aca																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10305557	10305557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	162	443	0	ENST00000340748.4:c.19C>T	p.Pro7Ser	p.P7S	ENST00000340748		7	Cca/Tca																																																																														
CARM1	10498	MSKCC	GRCh37	19	11030281	11030281	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	52	397	0	ENST00000327064.4:c.1031A>G	p.Asp344Gly	p.D344G	ENST00000327064	NM_199141.1	344	gAc/gGc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11030635	11030635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	122	501	0	ENST00000327064.4:c.1189G>A	p.Gly397Ser	p.G397S	ENST00000327064	NM_199141.1	397	Ggc/Agc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11107024	11107024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	120	438	1	ENST00000344626.4:c.1729G>A	p.Ala577Thr	p.A577T	ENST00000344626	NM_003072.3	577	Gcc/Acc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11118642	11118642	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	188	560	0	ENST00000344626.4:c.2066A>C	p.Lys689Thr	p.K689T	ENST00000344626	NM_003072.3	689	aAg/aCg																																																																														
CALR	811	MSKCC	GRCh37	19	13051598	13051598	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	52	394	2	ENST00000316448.5:c.857A>T	p.Lys286Met	p.K286M	ENST00000316448	NM_004343.3	286	aAg/aTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298742	15298742	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	228	675	1	ENST00000263388.2:c.1556G>T	p.Gly519Val	p.G519V	ENST00000263388	NM_000435.2	519	gGc/gTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302837	15302837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	228	724	1	ENST00000263388.2:c.613C>T	p.Pro205Ser	p.P205S	ENST00000263388	NM_000435.2	205	Cca/Tca																																																																														
JAK3	3718	MSKCC	GRCh37	19	17951082	17951082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	228	539	0	ENST00000458235.1:c.1211G>A	p.Ser404Asn	p.S404N	ENST00000458235	NM_000215.3	404	aGc/aAc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278056	18278056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	196	666	0	ENST00000222254.8:c.1676G>A	p.Arg559His	p.R559H	ENST00000222254	NM_005027.3	559	cGc/cAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18964115	18964115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	172	476	0	ENST00000262803.5:c.1112C>T	p.Ala371Val	p.A371V	ENST00000262803	NM_002911.3	371	gCg/gTg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18974986	18974986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	138	491	1	ENST00000262803.5:c.2783G>A	p.Arg928His	p.R928H	ENST00000262803	NM_002911.3	928	cGc/cAc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792666	33792666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	77	120	0	ENST00000498907.2:c.655C>T	p.His219Tyr	p.H219Y	ENST00000498907	NM_004364.3	219	Cac/Tac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212095	36212095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	215	681	0	ENST00000222270.7:c.1846C>T	p.Arg616Trp	p.R616W	ENST00000222270	NM_014727.1	616	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216711	36216711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	135	398	0	ENST00000222270.7:c.3877C>T	p.Arg1293Cys	p.R1293C	ENST00000222270	NM_014727.1	1293	Cgc/Tgc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791588	42791588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	52	503	1	ENST00000575354.2:c.569G>A	p.Arg190His	p.R190H	ENST00000575354	NM_015125.3	190	cGc/cAc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867575	45867575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	215	789	0	ENST00000391945.4:c.733G>A	p.Asp245Asn	p.D245N	ENST00000391945	NM_000400.3	245	Gac/Aac																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905346	50905346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	254	773	0	ENST00000440232.2:c.554C>T	p.Pro185Leu	p.P185L	ENST00000440232	NM_002691.3	185	cCg/cTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919881	50919881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	147	664	0	ENST00000440232.2:c.2968C>T	p.Arg990Cys	p.R990C	ENST00000440232	NM_002691.3	990	Cgc/Tgc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716241	52716241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	172	571	1	ENST00000322088.6:c.685G>A	p.Val229Met	p.V229M	ENST00000322088	NM_014225.5	229	Gtg/Atg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086205	16086205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	132	337	0	ENST00000281043.3:c.1381G>A	p.Ala461Thr	p.A461T	ENST00000281043	NM_005378.4	461	Gct/Act																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46609593	46609593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	141	704	0	ENST00000263734.3:c.2317C>A	p.Leu773Met	p.L773M	ENST00000263734	NM_001430.4	773	Ctg/Atg																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47596672	47596672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	108	308	0	ENST00000263735.4:c.28G>A	p.Gly10Arg	p.G10R	ENST00000263735	NM_002354.2	10	Ggg/Agg																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873374	136873374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	110	439	1	ENST00000241393.3:c.124C>T	p.Pro42Ser	p.P42S	ENST00000241393	NM_003467.2	42	Ccc/Tcc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017736	31017736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	170	433	0	ENST00000375687.4:c.598G>A	p.Gly200Ser	p.G200S	ENST00000375687	NM_015338.5	200	Ggc/Agc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375105	31375105	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	76	651	0	ENST00000328111.2:c.502A>G	p.Ile168Val	p.I168V	ENST00000328111	NM_006892.3	168	Atc/Gtc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39751878	39751878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	87	369	0	ENST00000361337.2:c.2239A>G	p.Thr747Ala	p.T747A	ENST00000361337	NM_003286.2	747	Acc/Gcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420011	41420011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	124	365	0	ENST00000373198.4:c.310G>A	p.Asp104Asn	p.D104N	ENST00000373198	NM_133170.3	104	Gac/Aac																																																																														
AURKA	6790	MSKCC	GRCh37	20	54958143	54958143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	30	464	0	ENST00000312783.6:c.464G>T	p.Ser155Ile	p.S155I	ENST00000312783	NM_198436.1	155	aGc/aTc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326475	62326475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	275	777	0	ENST00000508582.2:c.3472G>T	p.Asp1158Tyr	p.D1158Y	ENST00000508582		1158	Gac/Tac																																																																														
ERG	2078	MSKCC	GRCh37	21	39772561	39772561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	85	350	0	ENST00000288319.7:c.680C>T	p.Ala227Val	p.A227V	ENST00000288319	NM_182918.3	227	gCa/gTa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175800	24175800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	99	391	1	ENST00000263121.7:c.1028C>T	p.Thr343Met	p.T343M	ENST00000263121	NM_003073.3	343	aCg/aTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41513676	41513676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	60	483	0	ENST00000263253.7:c.580G>A	p.Gly194Ser	p.G194S	ENST00000263253	NM_001429.3	194	Ggt/Agt																																																																														
EP300	2033	MSKCC	GRCh37	22	41573548	41573548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	42	651	1	ENST00000263253.7:c.5833G>A	p.Val1945Met	p.V1945M	ENST00000263253	NM_001429.3	1945	Gtg/Atg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421289	12421289	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	216	607	1	ENST00000287820.6:c.169T>C	p.Ser57Pro	p.S57P	ENST00000287820	NM_015869.4	57	Tcc/Ccc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165140	47165140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	44	306	0	ENST00000409792.3:c.986G>A	p.Arg329Gln	p.R329Q	ENST00000409792	NM_014159.6	329	cGg/cAg																																																																														
MST1	4485	MSKCC	GRCh37	3	49722238	49722238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	148	498	0	ENST00000449682.2:c.1702C>T	p.Arg568Trp	p.R568W	ENST00000449682	NM_020998.3	568	Cgg/Tgg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940997	49940997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	142	447	0	ENST00000296474.3:c.46C>A	p.Leu16Met	p.L16M	ENST00000296474	NM_002447.2	16	Ctg/Atg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584583	52584583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	72	629	1	ENST00000394830.3:c.4430C>A	p.Pro1477His	p.P1477H	ENST00000394830	NM_018313.4	1477	cCt/cAt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643650	52643650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	254	526	0	ENST00000394830.3:c.2246C>A	p.Ala749Asp	p.A749D	ENST00000394830	NM_018313.4	749	gCt/gAt																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72881575	72881575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	138	398	2	ENST00000325599.8:c.544C>T	p.Arg182Ter	p.R182*	ENST00000325599	NM_018130.2	182	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462291	89462291	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	56	325	0	ENST00000336596.2:c.1763T>C	p.Leu588Ser	p.L588S	ENST00000336596	NM_005233.5	588	tTa/tCa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205164	128205164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	67	604	0	ENST00000341105.2:c.277C>T	p.Pro93Ser	p.P93S	ENST00000341105	NM_032638.4	93	Ccg/Tcg																																																																														
ATR	545	MSKCC	GRCh37	3	142242884	142242884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	124	469	0	ENST00000350721.4:c.4103G>A	p.Arg1368Gln	p.R1368Q	ENST00000350721	NM_001184.3	1368	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142269089	142269089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	57	442	0	ENST00000350721.4:c.2861G>A	p.Cys954Tyr	p.C954Y	ENST00000350721	NM_001184.3	954	tGc/tAc																																																																														
BCL6	604	MSKCC	GRCh37	3	187446988	187446988	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139744042		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	207	701	1	ENST00000232014.4:c.1205G>A	p.Arg402His	p.R402H	ENST00000232014	NM_001130845.1	402	cGc/cAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801476	1801476	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200300532		P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	130	670	0	ENST00000260795.2:c.382G>A	p.Ala128Thr	p.A128T	ENST00000260795		128	Gct/Act																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807147	1807147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	218	763	1	ENST00000260795.2:c.1478G>A	p.Gly493Asp	p.G493D	ENST00000260795		493	gGc/gAc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1918766	1918766	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	53	254	0	ENST00000382891.5:c.927+2T>C		p.X309_splice	ENST00000382891	NM_133335.3	309																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748140	41748140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	108	269	0	ENST00000226382.2:c.629C>T	p.Ala210Val	p.A210V	ENST00000226382	NM_003924.3	210	gCg/gTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55981058	55981058	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	67	419	0	ENST00000263923.4:c.641A>G	p.Tyr214Cys	p.Y214C	ENST00000263923	NM_002253.2	214	tAc/tGc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467937	66467937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	99	383	0	ENST00000273854.3:c.332A>G	p.Asn111Ser	p.N111S	ENST00000273854	NM_004439.5	111	aAc/aGc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535448	66535448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	121	269	0	ENST00000273854.3:c.13G>A	p.Gly5Arg	p.G5R	ENST00000273854	NM_004439.5	5	Ggg/Agg																																																																														
TET2	54790	MSKCC	GRCh37	4	106155865	106155865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	101	377	0	ENST00000380013.4:c.766G>A	p.Ala256Thr	p.A256T	ENST00000380013	NM_001127208.2	256	Gct/Act																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251901	153251901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	56	492	0	ENST00000281708.4:c.1105G>A	p.Glu369Lys	p.E369K	ENST00000281708	NM_033632.3	369	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187527265	187527265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	173	465	1	ENST00000441802.2:c.10309G>A	p.Ala3437Thr	p.A3437T	ENST00000441802	NM_005245.3	3437	Gcg/Acg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535398	187535398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	93	470	0	ENST00000441802.2:c.9176C>T	p.Thr3059Ile	p.T3059I	ENST00000441802	NM_005245.3	3059	aCt/aTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541412	187541412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	136	390	0	ENST00000441802.2:c.6328A>G	p.Ser2110Gly	p.S2110G	ENST00000441802	NM_005245.3	2110	Agt/Ggt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584691	187584691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	63	427	0	ENST00000441802.2:c.3342G>T	p.Gln1114His	p.Q1114H	ENST00000441802	NM_005245.3	1114	caG/caT																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31451720	31451720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	15	287	0	ENST00000344624.3:c.2602C>A	p.His868Asn	p.H868N	ENST00000344624		868	Cat/Aat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31464435	31464435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	196	721	0	ENST00000344624.3:c.2482delA	p.Ile828TyrfsTer7	p.I828Yfs*7	ENST00000344624		828	Ata/ta																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515249	31515249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	92	740	2	ENST00000344624.3:c.1136G>A	p.Gly379Asp	p.G379D	ENST00000344624		379	gGc/gAc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38960564	38960564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	18	217	0	ENST00000357387.3:c.1787C>T	p.Ala596Val	p.A596V	ENST00000357387	NM_152756.3	596	gCc/gTc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80083469	80083469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	134	700	2	ENST00000265081.6:c.2521G>A	p.Ala841Thr	p.A841T	ENST00000265081	NM_002439.4	841	Gct/Act																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441360	149441360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	71	686	0	ENST00000286301.3:c.1679G>A	p.Ser560Asn	p.S560N	ENST00000286301	NM_005211.3	560	aGt/aAt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149504391	149504391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	151	527	0	ENST00000261799.4:c.1811G>A	p.Arg604His	p.R604H	ENST00000261799	NM_002609.3	604	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721424	176721424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	137	415	0	ENST00000439151.2:c.7055G>A	p.Arg2352Lys	p.R2352K	ENST00000439151	NM_022455.4	2352	aGa/aAa																																																																														
STK19	8859	MSKCC	GRCh37	6	31939990	31939990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	121	558	0	ENST00000375331.2:c.217G>A	p.Ala73Thr	p.A73T	ENST00000375331	NM_004197.1	73	Gct/Act																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181576	32181576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	272	717	0	ENST00000375023.3:c.2209C>T	p.Pro737Ser	p.P737S	ENST00000375023	NM_004557.3	737	Cca/Tca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190578	32190578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	166	518	0	ENST00000375023.3:c.161C>T	p.Ala54Val	p.A54V	ENST00000375023	NM_004557.3	54	gCc/gTc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797263	32797263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	258	689	0	ENST00000374899.4:c.1846G>A	p.Ala616Thr	p.A616T	ENST00000374899	NM_018833.2	616	Gcc/Acc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800549	32800549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	318	672	0	ENST00000374899.4:c.998G>A	p.Arg333Gln	p.R333Q	ENST00000374899	NM_018833.2	333	cGg/cAg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32820249	32820249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	75	550	0	ENST00000354258.4:c.809G>A	p.Arg270His	p.R270H	ENST00000354258	NM_000593.5	270	cGc/cAc																																																																														
PIM1	5292	MSKCC	GRCh37	6	37139172	37139172	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	137	350	0	ENST00000373509.5:c.515del	p.Asn172ThrfsTer102	p.N172Tfs*102	ENST00000373509	NM_002648.3	171	gAa/ga																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553470	106553470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	97	277	0	ENST00000369096.4:c.1435C>T	p.Leu479Phe	p.L479F	ENST00000369096	NM_001198.3	479	Ctc/Ttc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554865	106554865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	29	358	0	ENST00000369096.4:c.1982G>A	p.Cys661Tyr	p.C661Y	ENST00000369096	NM_001198.3	661	tGc/tAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641129	117641129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	131	580	1	ENST00000368508.3:c.5842C>T	p.Arg1948Cys	p.R1948C	ENST00000368508	NM_002944.2	1948	Cgt/Tgt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708058	117708058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	45	365	0	ENST00000368508.3:c.2119G>A	p.Val707Met	p.V707M	ENST00000368508	NM_002944.2	707	Gtg/Atg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200393	138200393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	48	432	0	ENST00000237289.4:c.1811C>T	p.Thr604Met	p.T604M	ENST00000237289	NM_001270507.1	604	aCg/aTg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005023	150005023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	43	442	1	ENST00000253339.5:c.1202C>T	p.Thr401Ile	p.T401I	ENST00000253339		401	aCa/aTa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976827	2976827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	222	688	2	ENST00000396946.4:c.1185G>T	p.Gln395His	p.Q395H	ENST00000396946	NM_032415.4	395	caG/caT																																																																														
ETV1	2115	MSKCC	GRCh37	7	13940404	13940404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	141	390	0	ENST00000405192.2:c.1102C>T	p.Arg368Cys	p.R368C	ENST00000405192	NM_001163147.1	368	Cgt/Tgt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467718	50467718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	140	465	0	ENST00000331340.3:c.953C>A	p.Ala318Asp	p.A318D	ENST00000331340	NM_006060.4	318	gCc/gAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223559	55223559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	218	489	1	ENST00000275493.2:c.926G>A	p.Arg309Gln	p.R309Q	ENST00000275493	NM_005228.3	309	cGa/cAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55225397	55225397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	167	454	0	ENST00000275493.2:c.1249C>A	p.Leu417Ile	p.L417I	ENST00000275493	NM_005228.3	417	Ctc/Atc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55233015	55233015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	159	345	0	ENST00000275493.2:c.1765C>T	p.Pro589Ser	p.P589S	ENST00000275493	NM_005228.3	589	Ccc/Tcc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508410	106508410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	47	205	0	ENST00000359195.3:c.404T>C	p.Ile135Thr	p.I135T	ENST00000359195	NM_002649.2	135	aTc/aCc																																																																														
MET	4233	MSKCC	GRCh37	7	116340302	116340302	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	70	279	1	ENST00000397752.3:c.1168del	p.Tyr390ThrfsTer14	p.Y390Tfs*14	ENST00000397752	NM_000245.2	388	caT/ca																																																																														
MET	4233	MSKCC	GRCh37	7	116412250	116412250	+	intron_variant	Intron	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	95	672	2	ENST00000397752.3:c.3028+207C>T		p.*1010*	ENST00000397752	NM_000245.2																																																																																
MET	4233	MSKCC	GRCh37	7	116417488	116417488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	27	337	0	ENST00000397752.3:c.3305G>A	p.Gly1102Asp	p.G1102D	ENST00000397752	NM_000245.2	1102	gGc/gAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151841812	151841812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	90	294	0	ENST00000262189.6:c.14329C>T	p.Arg4777Trp	p.R4777W	ENST00000262189	NM_170606.2	4777	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845229	151845229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	144	412	2	ENST00000262189.6:c.13783C>T	p.Arg4595Cys	p.R4595C	ENST00000262189	NM_170606.2	4595	Cgc/Tgc																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194902	29194902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	77	673	2	ENST00000240100.2:c.826G>A	p.Val276Met	p.V276M	ENST00000240100	NM_001394.6	276	Gtg/Atg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29195943	29195943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	266	691	0	ENST00000240100.2:c.655G>A	p.Ala219Thr	p.A219T	ENST00000240100	NM_001394.6	219	Gcc/Acc																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38173035	38173035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	120	463	1	ENST00000317025.8:c.2014C>A	p.Pro672Thr	p.P672T	ENST00000317025	NM_023034.1	672	Cct/Act																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370751	55370751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	150	412	2	ENST00000297316.4:c.53G>A	p.Ser18Asn	p.S18N	ENST00000297316	NM_022454.3	18	aGc/aAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864734	68864734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	167	515	0	ENST00000288368.4:c.105G>T	p.Glu35Asp	p.E35D	ENST00000288368	NM_024870.2	35	gaG/gaT																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046350	69046350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	85	440	0	ENST00000288368.4:c.3823G>A	p.Val1275Ile	p.V1275I	ENST00000288368	NM_024870.2	1275	Gtc/Atc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069573	69069573	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	53	372	0	ENST00000288368.4:c.4248A>C	p.Glu1416Asp	p.E1416D	ENST00000288368	NM_024870.2	1416	gaA/gaC																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129944	69129944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	86	239	0	ENST00000288368.4:c.4698G>A	p.Met1566Ile	p.M1566I	ENST00000288368	NM_024870.2	1566	atG/atA																																																																														
MYC	4609	MSKCC	GRCh37	8	128752762	128752762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	46	228	0	ENST00000377970.2:c.923G>T	p.Ser308Ile	p.S308I	ENST00000377970	NM_002467.4	308	aGc/aTc																																																																														
MYC	4609	MSKCC	GRCh37	8	128752788	128752788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	24	211	0	ENST00000377970.2:c.949G>A	p.Val317Ile	p.V317I	ENST00000377970	NM_002467.4	317	Gtc/Atc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141567297	141567297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	200	529	0	ENST00000220592.5:c.917G>A	p.Cys306Tyr	p.C306Y	ENST00000220592	NM_012154.3	306	tGc/tAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449746	8449746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	180	535	0	ENST00000356435.5:c.3967C>T	p.Arg1323Cys	p.R1323C	ENST00000356435		1323	Cgc/Tgc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98215865	98215865	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	66	522	0	ENST00000331920.6:c.3344C>A	p.Ala1115Asp	p.A1115D	ENST00000331920	NM_000264.3	1115	gCt/gAt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98242740	98242740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	63	543	1	ENST00000331920.6:c.877G>A	p.Asp293Asn	p.D293N	ENST00000331920	NM_000264.3	293	Gac/Aac																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128322074	128322074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	105	419	1	ENST00000265960.3:c.686C>T	p.Ala229Val	p.A229V	ENST00000265960	NM_001006617.1	229	gCc/gTc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300944	137300944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	155	511	1	ENST00000481739.1:c.589G>A	p.Ala197Thr	p.A197T	ENST00000481739	NM_002957.4	197	Gcc/Acc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390759	139390759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	257	760	1	ENST00000277541.6:c.7432G>A	p.Ala2478Thr	p.A2478T	ENST00000277541	NM_017617.3	2478	Gca/Aca																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400281	139400281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	80	661	0	ENST00000277541.6:c.4067G>A	p.Arg1356His	p.R1356H	ENST00000277541	NM_017617.3	1356	cGc/cAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402735	139402735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	103	828	1	ENST00000277541.6:c.3274C>A	p.Leu1092Ile	p.L1092I	ENST00000277541	NM_017617.3	1092	Ctt/Att																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409841	139409841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	160	823	0	ENST00000277541.6:c.1915G>A	p.Glu639Lys	p.E639K	ENST00000277541	NM_017617.3	639	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412721	139412721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	250	730	2	ENST00000277541.6:c.1123G>A	p.Ala375Thr	p.A375T	ENST00000277541	NM_017617.3	375	Gca/Aca																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841144	15841144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	122	222	0	ENST00000307771.7:c.1228C>T	p.Arg410Cys	p.R410C	ENST00000307771	NM_005089.3	410	Cgc/Tgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933028	39933028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	261	378	0	ENST00000378444.4:c.1571G>A	p.Ser524Asn	p.S524N	ENST00000378444	NM_001123385.1	524	aGc/aAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934165	39934165	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	229	320	0	ENST00000378444.4:c.434T>C	p.Phe145Ser	p.F145S	ENST00000378444	NM_001123385.1	145	tTc/tCc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44935952	44935952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	19	162	0	ENST00000377967.4:c.2717del	p.Asn906MetfsTer31	p.N906Mfs*31	ENST00000377967	NM_021140.2	905	Aaa/aa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412545	63412545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	190	289	0	ENST00000330258.3:c.622G>A	p.Val208Met	p.V208M	ENST00000330258	NM_152424.3	208	Gtg/Atg																																																																														
AR	367	MSKCC	GRCh37	X	66765679	66765679	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	238	409	0	ENST00000374690.3:c.691A>G	p.Thr231Ala	p.T231A	ENST00000374690	NM_000044.3	231	Acc/Gcc																																																																														
ATRX	546	MSKCC	GRCh37	X	76939320	76939320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	34	376	0	ENST00000373344.5:c.1428G>T	p.Gln476His	p.Q476H	ENST00000373344	NM_000489.3	476	caG/caT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224544	123224544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	16	290	0	ENST00000218089.9:c.3397C>T	p.Arg1133Trp	p.R1133W	ENST00000218089	NM_001042749.1	1133	Cgg/Tgg																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152857973	152857973	+	synonymous_variant	Silent	SNP	C	C	T			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	44	89	0	ENST00000406277.2:c.642G>A	p.Pro214=	p.P214=	ENST00000406277	NM_152274.4	214	ccG/ccA																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881329	37881332	+	missense_variant	Missense_Mutation	ONP	CTCG	CTCG	ATCA			P-0033425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	142	655	0	ENST00000269571.5:c.2521_2524delinsATCA	p.Leu841_Val842delinsIleIle	p.L841_V842delinsII	ENST00000269571		841	CTCGta/ATCAta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	136	222	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108200975	108200975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	190	414	0	ENST00000278616.4:c.7342G>A	p.Asp2448Asn	p.D2448N	ENST00000278616	NM_000051.3	2448	Gat/Aat																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	168	301	1	ENST00000349496.5:c.134C>A	p.Ser45Tyr	p.S45Y	ENST00000349496	NM_001904.3	45	tCt/tAt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193202218	193202238	+	inframe_deletion	In_Frame_Del	DEL	CTGCAATTAGTGTTACAGTAC	CTGCAATTAGTGTTACAGTAC	-			P-0033633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	133	405	0	ENST00000367435.3:c.1252_1272del	p.Ala418_Pro424del	p.A418_P424del	ENST00000367435	NM_024529.4	417	aCTGCAATTAGTGTTACAGTACct/act																																																																														
ATM	472	MSKCC	GRCh37	11	108218044	108218044	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	194	372	0	ENST00000278616.4:c.8623A>C	p.Asn2875His	p.N2875H	ENST00000278616	NM_000051.3	2875	Aat/Cat																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021187	31021188	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	285	512	1	ENST00000375687.4:c.1187dup	p.Arg397AlafsTer13	p.R397Afs*13	ENST00000375687	NM_015338.5	396	cag/cAag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275342	41275342	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	159	358	1	ENST00000349496.5:c.1508A>C	p.His503Pro	p.H503P	ENST00000349496	NM_001904.3	503	cAc/cCc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438519	52438520	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCATCCTCATCA			P-0033633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	260	682	0	ENST00000460680.1:c.1188_1199dup	p.Asp397_Asp400dup	p.D397_D400dup	ENST00000460680	NM_004656.3	397	gac/gaTGATGAGGATGAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030628	47030628	+	intron_variant	Intron	SNP	A	A	T			P-0033633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	338	340	0	ENST00000329236.7:c.201+1731A>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
EP300	2033	MSKCC	GRCh37	22	41525914	41525914	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	45	419	0	ENST00000263253.7:c.1189C>T	p.Arg397Ter	p.R397*	ENST00000263253	NM_001429.3	397	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	181	417	1	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
MST1R	4486	MSKCC	GRCh37	3	49924980	49924980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	81	504	0	ENST00000296474.3:c.3963G>T	p.Gln1321His	p.Q1321H	ENST00000296474	NM_002447.2	1321	caG/caT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	166	414	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	166	414	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	166	414	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	317	823	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916248	9916248	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	38	390	1	ENST00000330684.3:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000330684	NM_001134407.1	681	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409769	139409769	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	142	813	0	ENST00000277541.6:c.1987G>T	p.Glu663Ter	p.E663*	ENST00000277541	NM_017617.3	663	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	185	287	0				ENST00000310581	NM_198253.2																																																																																
NOTCH2	4853	MSKCC	GRCh37	1	120510233	120510233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	176	381	0	ENST00000256646.2:c.1276C>T	p.Pro426Ser	p.P426S	ENST00000256646	NM_024408.3	426	Cct/Tct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822285	72822285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	120	836	1	ENST00000268489.5:c.9890C>T	p.Ser3297Leu	p.S3297L	ENST00000268489	NM_006885.3	3297	tCg/tTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139403372	139403372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	54	775	2	ENST00000277541.6:c.3121G>A	p.Gly1041Ser	p.G1041S	ENST00000277541	NM_017617.3	1041	Ggc/Agc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224190	36224190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	65	786	0	ENST00000222270.7:c.6740G>A	p.Gly2247Glu	p.G2247E	ENST00000222270	NM_014727.1	2247	gGa/gAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576147	88576147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	149	803	1	ENST00000360948.2:c.1526C>T	p.Pro509Leu	p.P509L	ENST00000360948	NM_001012338.2	509	cCt/cTt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224158	39224158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	77	301	0	ENST00000402219.2:c.2986C>T	p.Pro996Ser	p.P996S	ENST00000402219	NM_005633.3	996	Ccg/Tcg																																																																														
ATM	472	MSKCC	GRCh37	11	108115601	108115601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56123940		P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	93	385	0	ENST00000278616.4:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000278616	NM_000051.3	250	cGa/cAa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465551	99465552	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	100	666	2	ENST00000268035.6:c.2376_2377delinsTT	p.Leu793Phe	p.L793F	ENST00000268035	NM_000875.3	792	aaCCtt/aaTTtt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15960889	15960889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	79	346	0	ENST00000268712.3:c.6331C>T	p.His2111Tyr	p.H2111Y	ENST00000268712	NM_006311.3	2111	Cat/Tat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223985	36223985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	93	1033	0	ENST00000222270.7:c.6535C>T	p.Pro2179Ser	p.P2179S	ENST00000222270	NM_014727.1	2179	Cct/Tct																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321118	62321118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	554	840	0	ENST00000508582.2:c.2113G>A	p.Glu705Lys	p.E705K	ENST00000508582		705	Gag/Aag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499489	89499489	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	107	457	0	ENST00000336596.2:c.2659A>T	p.Ser887Cys	p.S887C	ENST00000336596	NM_005233.5	887	Agc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921549	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	69	263	0	ENST00000263967.3:c.1030_1031delGTinsAA	p.Val344Lys	p.V344K	ENST00000263967	NM_006218.2	344	GTg/AAg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146760	185146760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	128	724	0	ENST00000265026.3:c.391C>T	p.Leu131Phe	p.L131F	ENST00000265026	NM_004721.4	131	Ctt/Ttt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557972	187557972	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	107	474	0	ENST00000441802.2:c.3739C>T	p.Gln1247Ter	p.Q1247*	ENST00000441802	NM_005245.3	1247	Caa/Taa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149439328	149439329	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	256	798	1	ENST00000286301.3:c.2066_2067delinsTT	p.Pro689Leu	p.P689L	ENST00000286301	NM_005211.3	689	cCC/cTT																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741986	145741987	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	119	730	0	ENST00000428558.2:c.516_517delinsTT	p.Gln173Ter	p.Q173*	ENST00000428558	NM_004260.3	172	ctCCag/ctTTag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399775	139399775	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	151	645	0	ENST00000277541.6:c.4573G>T	p.Glu1525Ter	p.E1525*	ENST00000277541	NM_017617.3	1525	Gaa/Taa																																																																														
XIAP	331	MSKCC	GRCh37	X	123019693	123019693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	114	297	0	ENST00000355640.3:c.181G>T	p.Val61Leu	p.V61L	ENST00000355640		61	Gtg/Ttg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	32	442	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	62	461	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	62	461	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	62	461	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273962	10273962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	67	879	0	ENST00000330684.3:c.307G>A	p.Asp103Asn	p.D103N	ENST00000330684	NM_001134407.1	103	Gac/Aac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	46	539	0	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971005	21971005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	44	636	0	ENST00000304494.5:c.353C>T	p.Ala118Val	p.A118V	ENST00000304494	NM_000077.4	118	gCt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0033950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	41	419	0				ENST00000310581	NM_198253.2																																																																																
FOXA1	3169	MSKCC	GRCh37	14	38061147	38061148	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	31	261	0	ENST00000250448.2:c.841_842delinsAA	p.Gly281Lys	p.G281K	ENST00000250448	NM_004496.3	281	GGa/AAa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612422	1612422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	79	774	0	ENST00000344749.5:c.1597G>A	p.Glu533Lys	p.E533K	ENST00000344749	NM_001136139.2	533	Gag/Aag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370708	55370708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	70	495	0	ENST00000297316.4:c.10C>T	p.Pro4Ser	p.P4S	ENST00000297316	NM_022454.3	4	Ccg/Tcg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	131	403	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0034468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	149	461	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0034468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	149	461	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578195	7578197	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0034468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	238	673	0	ENST00000269305.4:c.652_654del	p.Val218del	p.V218del	ENST00000269305	NM_001126112.2	218	GTG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0034468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	149	461	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0034468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	187	606	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229256	36229256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	504	774	0	ENST00000222270.7:c.7946G>A	p.Arg2649His	p.R2649H	ENST00000222270	NM_014727.1	2649	cGc/cAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942754	68942754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	125	445	0	ENST00000288368.4:c.566G>A	p.Arg189Gln	p.R189Q	ENST00000288368	NM_024870.2	189	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444166	49444166	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	233	821	0	ENST00000301067.7:c.3205G>T	p.Glu1069Ter	p.E1069*	ENST00000301067	NM_003482.3	1069	Gag/Tag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63545656	63545656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	75	463	0	ENST00000307078.5:c.938C>T	p.Ser313Phe	p.S313F	ENST00000307078	NM_004655.3	313	tCc/tTc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80150126	80150126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	52	451	1	ENST00000265081.6:c.2991C>A	p.Phe997Leu	p.F997L	ENST00000265081	NM_002439.4	997	ttC/ttA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910686	32910686	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034632-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			397	86	675	0	ENST00000380152.3:c.2194G>T	p.Glu732Ter	p.E732*	ENST00000380152		732	Gag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319920	8319920	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034632-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			247	108	491	0	ENST00000356435.5:c.5581T>A	p.Leu1861Met	p.L1861M	ENST00000356435		1861	Ttg/Atg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38064107	38064107	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0034632-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			447	55	429	0	ENST00000250448.2:c.71A>T	p.Glu24Val	p.E24V	ENST00000250448	NM_004496.3	24	gAg/gTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224130	36224130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034632-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			482	129	840	0	ENST00000222270.7:c.6680C>G	p.Thr2227Arg	p.T2227R	ENST00000222270	NM_014727.1	2227	aCg/aGg																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683713	162683713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	354	549	0	ENST00000366898.1:c.256G>A	p.Asp86Asn	p.D86N	ENST00000366898	NM_004562.2	86	Gac/Aac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317926	8317926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	366	336	0	ENST00000356435.5:c.5687C>T	p.Ser1896Phe	p.S1896F	ENST00000356435		1896	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	329	361	1	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	329	361	1	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	329	361	1	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
NF1	4763	MSKCC	GRCh37	17	29546086	29546086	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	356	361	0	ENST00000358273.4:c.1591C>T	p.Gln531Ter	p.Q531*	ENST00000358273	NM_001042492.2	531	Caa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	402	472	0				ENST00000310581	NM_198253.2																																																																																
KMT2A	4297	MSKCC	GRCh37	11	118352660	118352660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	213	439	0	ENST00000534358.1:c.3865C>T	p.Pro1289Ser	p.P1289S	ENST00000534358	NM_005933.3	1289	Cca/Tca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118361916	118361916	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	74	220	0	ENST00000534358.1:c.4702T>C	p.Phe1568Leu	p.F1568L	ENST00000534358	NM_005933.3	1568	Ttc/Ctc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118368754	118368754	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	453	474	0	ENST00000534358.1:c.5768A>T	p.Asn1923Ile	p.N1923I	ENST00000534358	NM_005933.3	1923	aAt/aTt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926910	112926910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	429	564	0	ENST00000351677.2:c.1530G>T	p.Gln510His	p.Q510H	ENST00000351677	NM_002834.3	510	caG/caT																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118820	115118821	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	155	471	1	ENST00000257566.3:c.520_521delinsCT	p.Gly174Leu	p.G174L	ENST00000257566	NM_016569.3	174	GGt/CTt																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022938	33022938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	272	391	0	ENST00000300177.4:c.47G>A	p.Gly16Glu	p.G16E	ENST00000300177	NM_001191322.1	16	gGg/gAg																																																																														
CD276	80381	MSKCC	GRCh37	15	73996081	73996081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	715	884	0	ENST00000318443.5:c.815C>T	p.Pro272Leu	p.P272L	ENST00000318443	NM_001024736.1	272	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29679365	29679366	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	178	380	2	ENST00000358273.4:c.7548_7549delinsTT	p.Arg2517Ter	p.R2517*	ENST00000358273	NM_001042492.2	2516	ccCCga/ccTTga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480411	89480411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	362	347	0	ENST00000336596.2:c.2248C>T	p.Arg750Trp	p.R750W	ENST00000336596	NM_005233.5	750	Cgg/Tgg																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747861	41747861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	171	515	2	ENST00000226382.2:c.908G>A	p.Gly303Asp	p.G303D	ENST00000226382	NM_003924.3	303	gGt/gAt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945119	38945119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	175	338	1	ENST00000357387.3:c.4685C>T	p.Pro1562Leu	p.P1562L	ENST00000357387	NM_152756.3	1562	cCt/cTt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522561	176522561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	308	683	3	ENST00000292408.4:c.1658C>T	p.Ala553Val	p.A553V	ENST00000292408	NM_213647.1	553	gCc/gTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680438	30680438	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	1445	580	0	ENST00000376406.3:c.1281G>A	p.Trp427Ter	p.W427*	ENST00000376406	NM_014641.2	427	tgG/tgA																																																																														
PARK2	5071	MSKCC	GRCh37	6	161781150	161781150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	455	710	1	ENST00000366898.1:c.1255C>T	p.Pro419Ser	p.P419S	ENST00000366898	NM_004562.2	419	Ccc/Tcc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980720	70980720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	459	530	2	ENST00000276594.2:c.748C>T	p.Pro250Ser	p.P250S	ENST00000276594	NM_024504.3	250	Cca/Tca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389286	8389286	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	564	709	0	ENST00000356435.5:c.4332G>A	p.Trp1444Ter	p.W1444*	ENST00000356435		1444	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	106	424	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865500	57865500	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	49	395	0	ENST00000228682.2:c.2981del	p.Pro994HisfsTer26	p.P994Hfs*26	ENST00000228682	NM_005269.2	993	Ccc/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923714	72923714	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	39	402	0	ENST00000268489.5:c.3364C>T	p.Gln1122Ter	p.Q1122*	ENST00000268489	NM_006885.3	1122	Cag/Tag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10259590	10259590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	83	424	0	ENST00000340748.4:c.2642A>G	p.Lys881Arg	p.K881R	ENST00000340748		881	aAa/aGa																																																																														
RYBP	23429	MSKCC	GRCh37	3	72428433	72428433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	68	395	0	ENST00000477973.2:c.569G>T	p.Val191Phe	p.V191F	ENST00000477973	NM_012234.5	191	Gtt/Ttt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629358	187629358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	73	415	0	ENST00000441802.2:c.1624G>T	p.Asp542Tyr	p.D542Y	ENST00000441802	NM_005245.3	542	Gac/Tac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638804	176638804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	82	353	0	ENST00000439151.2:c.3404C>T	p.Pro1135Leu	p.P1135L	ENST00000439151	NM_022455.4	1135	cCa/cTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527741	157527742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	39	319	0	ENST00000346085.5:c.5471dup	p.Asp1825Ter	p.D1825*	ENST00000346085	NM_020732.3	1822	-/G																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	98	302	0	ENST00000304494.5:c.303_304dup	p.Ala102GlyfsTer45	p.A102Gfs*45	ENST00000304494	NM_000077.4	102	gcg/gGGcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	98	302	0	ENST00000304494.5:c.303_304dup	p.Ala102GlyfsTer45	p.A102Gfs*45	ENST00000304494	NM_000077.4	102	gcg/gGGcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	98	302	0	ENST00000304494.5:c.303_304dup	p.Ala102GlyfsTer45	p.A102Gfs*45	ENST00000304494	NM_000077.4	102	gcg/gGGcg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030518	47030518	+	intron_variant	Intron	SNP	G	G	A			P-0034868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	16	199	0	ENST00000329236.7:c.201+1621G>A		p.*67*	ENST00000329236	NM_001204466.1																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157099424	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	69	212	0	ENST00000346085.5:c.363_365del	p.Gln131del	p.Q131del	ENST00000346085	NM_020732.3	121	CAA/-																																																																														
AKT2	208	MSKCC	GRCh37	19	40743956	40743956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	212	419	0	ENST00000392038.2:c.751C>T	p.Arg251Trp	p.R251W	ENST00000392038	NM_001626.4	251	Cgg/Tgg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	191	406	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	153	341	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4090688	4090688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	110	594	0	ENST00000262948.5:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000262948	NM_030662.3	371	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	105	534	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	54	196	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	228	433	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004217	150004217	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	46	251	0	ENST00000253339.5:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000253339		670	Cgg/Tgg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096498	178096498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	135	276	0	ENST00000397062.3:c.833A>G	p.Asn278Ser	p.N278S	ENST00000397062	NM_006164.4	278	aAc/aGc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	68	175	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670048	86670048	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	121	303	0	ENST00000274376.6:c.1845T>G	p.Tyr615Ter	p.Y615*	ENST00000274376	NM_002890.2	615	taT/taG																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133701	2133701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	94	475	1	ENST00000219476.3:c.3889G>A	p.Ala1297Thr	p.A1297T	ENST00000219476	NM_000548.3	1297	Gcc/Acc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	118	529	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5238995	5238995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	56	511	0	ENST00000357368.4:c.1784C>T	p.Ala595Val	p.A595V	ENST00000357368	NM_002850.3	595	gCg/gTg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386335	31386335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	302	511	0	ENST00000328111.2:c.1560G>T	p.Glu520Asp	p.E520D	ENST00000328111	NM_006892.3	520	gaG/gaT																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206711	36206711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	229	595	0	ENST00000300305.3:c.801G>A	p.Met267Ile	p.M267I	ENST00000300305		267	atG/atA																																																																														
TSC2	7249	MSKCC	GRCh37	16	2127688	2127688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	209	454	0	ENST00000219476.3:c.2927G>A	p.Arg976Gln	p.R976Q	ENST00000219476	NM_000548.3	976	cGg/cAg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046342	180046342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	300	520	2	ENST00000261937.6:c.2672G>A	p.Arg891His	p.R891H	ENST00000261937	NM_182925.4	891	cGc/cAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42798836	42798836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	108	596	0	ENST00000575354.2:c.4408C>T	p.Arg1470Cys	p.R1470C	ENST00000575354	NM_015125.3	1470	Cgc/Tgc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46726525	46726525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28363218		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	179	343	0	ENST00000371975.4:c.604C>T	p.Arg202Cys	p.R202C	ENST00000371975	NM_003579.3	202	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	250	512	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527697	157527697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	219	432	0	ENST00000346085.5:c.5422C>T	p.Arg1808Cys	p.R1808C	ENST00000346085	NM_020732.3	1808	Cgt/Tgt																																																																														
ERG	2078	MSKCC	GRCh37	21	39755666	39755666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	263	496	0	ENST00000288319.7:c.1099C>T	p.Arg367Cys	p.R367C	ENST00000288319	NM_182918.3	367	Cgc/Tgc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909491	50909491	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139557851		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	60	644	1	ENST00000440232.2:c.1295G>A	p.Arg432Gln	p.R432Q	ENST00000440232	NM_002691.3	432	cGg/cAg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780711	9780711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	251	551	1	ENST00000377346.4:c.1513G>A	p.Glu505Lys	p.E505K	ENST00000377346	NM_005026.3	505	Gag/Aag																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2213953	2213953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	248	441	1	ENST00000326181.6:c.32G>A	p.Arg11His	p.R11H	ENST00000326181	NM_032271.2	11	cGc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972893	32972893	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	94	161	1	ENST00000380152.3:c.10248del	p.Lys3416AsnfsTer11	p.K3416Nfs*11	ENST00000380152		3415	Aaa/aa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411489	63411489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200798538		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	117	695	0	ENST00000330258.3:c.1678C>T	p.Arg560Trp	p.R560W	ENST00000330258	NM_152424.3	560	Cgg/Tgg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256696	46256696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	203	377	0	ENST00000371998.3:c.752G>A	p.Arg251His	p.R251H	ENST00000371998		251	cGc/cAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	36	202	0	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518250	8518250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	64	276	0	ENST00000356435.5:c.1141G>A	p.Ala381Thr	p.A381T	ENST00000356435		381	Gct/Act																																																																														
TP63	8626	MSKCC	GRCh37	3	189612170	189612170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	36	442	0	ENST00000264731.3:c.1922C>T	p.Ala641Val	p.A641V	ENST00000264731	NM_003722.4	641	gCt/gTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133254166	133254166	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	27	340	0	ENST00000320574.5:c.718G>A	p.Val240Met	p.V240M	ENST00000320574	NM_006231.2	240	Gtg/Atg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15967421	15967421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	246	378	0	ENST00000268712.3:c.5182C>T	p.Arg1728Trp	p.R1728W	ENST00000268712	NM_006311.3	1728	Cgg/Tgg																																																																														
FANCC	2176	MSKCC	GRCh37	9	97873817	97873817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	206	447	2	ENST00000289081.3:c.1257del	p.Thr420ArgfsTer27	p.T420Rfs*27	ENST00000289081	NM_000136.2	419	ccC/cc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033753	48033753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	92	233	0	ENST00000234420.5:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000234420	NM_000179.2	1322	Gaa/Taa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552837	106552837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	38	517	0	ENST00000369096.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000369096	NM_001198.3	268	Cgt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133226047	133226047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	290	526	0	ENST00000320574.5:c.3850C>T	p.Arg1284Trp	p.R1284W	ENST00000320574	NM_006231.2	1284	Cgg/Tgg																																																																														
CASP8	841	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	286	437	1	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	406	398	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748503	43748503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	53	268	0	ENST00000523873.1:c.457C>T	p.Arg153Ter	p.R153*	ENST00000523873		153	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	175	386	4	ENST00000399788.2:c.3597dupA	p.Gly1200ArgfsTer7	p.G1200Rfs*7	ENST00000399788	NM_001042603.1	1199	-/A																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88727513	88727513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	38	355	0	ENST00000360948.2:c.266G>A	p.Arg89His	p.R89H	ENST00000360948	NM_001012338.2	89	cGc/cAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41548269	41548269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	21	207	0	ENST00000263253.7:c.3061del	p.Thr1021LeufsTer3	p.T1021Lfs*3	ENST00000263253	NM_001429.3	1019	ttA/tt																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655272	45655272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	346	586	0	ENST00000407780.3:c.580C>T	p.Arg194Trp	p.R194W	ENST00000407780	NM_001283052.1	194	Cgg/Tgg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81934365	81934365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200919414		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	37	414	0	ENST00000359376.3:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000359376	NM_002661.3	448	Cgg/Tgg																																																																														
FYN	2534	MSKCC	GRCh37	6	112015725	112015725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	80	394	0	ENST00000368678.4:c.1117G>A	p.Ala373Thr	p.A373T	ENST00000368678		373	Gca/Aca																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683175	88683175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	21	275	0	ENST00000372037.3:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000372037	NM_004329.2	462	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112176011	112176011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	20	217	0	ENST00000257430.4:c.4720A>G	p.Ile1574Val	p.I1574V	ENST00000257430	NM_000038.5	1574	Ata/Gta																																																																														
TEK	7010	MSKCC	GRCh37	9	27213538	27213538	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	202	385	0	ENST00000380036.4:c.2938del	p.Ile980Ter	p.I980*	ENST00000380036	NM_000459.3	978	gcA/gc																																																																														
EP300	2033	MSKCC	GRCh37	22	41573978	41573978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	88	428	0	ENST00000263253.7:c.6263G>A	p.Arg2088Gln	p.R2088Q	ENST00000263253	NM_001429.3	2088	cGg/cAg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880988	37880988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	67	554	0	ENST00000269571.5:c.2317G>A	p.Val773Met	p.V773M	ENST00000269571		773	Gtg/Atg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843515	156843515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	286	568	1	ENST00000524377.1:c.941G>A	p.Arg314His	p.R314H	ENST00000524377	NM_002529.3	314	cGc/cAc																																																																														
TEK	7010	MSKCC	GRCh37	9	27158116	27158116	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	178	323	0	ENST00000380036.4:c.340C>T	p.Arg114Ter	p.R114*	ENST00000380036	NM_000459.3	114	Cga/Tga																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	48	537	2	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941264	71941264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	257	569	0	ENST00000298229.2:c.1039C>T	p.Arg347Trp	p.R347W	ENST00000298229	NM_001567.3	347	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107227	27107227	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	207	353	1	ENST00000324856.7:c.6842del	p.Leu2281Ter	p.L2281*	ENST00000324856	NM_006015.4	2280	Ttt/tt																																																																														
NF1	4763	MSKCC	GRCh37	17	29541588	29541588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	80	192	0	ENST00000358273.4:c.1514del	p.Lys505SerfsTer21	p.K505Sfs*21	ENST00000358273	NM_001042492.2	504	ccA/cc																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152357809	152357809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	167	327	0	ENST00000359321.1:c.98C>A	p.Ala33Asp	p.A33D	ENST00000359321	NM_005431.1	33	gCt/gAt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137075	64137075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	316	500	1	ENST00000334205.4:c.1586G>A	p.Arg529His	p.R529H	ENST00000334205	NM_003942.2	529	cGc/cAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671770	67671770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	109	381	1	ENST00000264010.4:c.2179C>T	p.Arg727Trp	p.R727W	ENST00000264010	NM_006565.3	727	Cgg/Tgg																																																																														
PGR	5241	MSKCC	GRCh37	11	100996755	100996757	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	139	325	0	ENST00000325455.5:c.1770_1772delCTT	p.Phe591del	p.F591del	ENST00000325455	NM_001202474.3	590	ttCTTt/ttt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279790	46279790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	232	377	0	ENST00000371998.3:c.3716G>A	p.Arg1239Gln	p.R1239Q	ENST00000371998		1239	cGa/cAa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46727055	46727055	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	204	425	0	ENST00000371975.4:c.889G>A	p.Glu297Lys	p.E297K	ENST00000371975	NM_003579.3	297	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11101910	11101910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	346	511	1	ENST00000344626.4:c.1330C>T	p.Arg444Cys	p.R444C	ENST00000344626	NM_003072.3	444	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707758	176707758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	70	285	0	ENST00000439151.2:c.5815C>T	p.Arg1939Cys	p.R1939C	ENST00000439151	NM_022455.4	1939	Cgc/Tgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339110	65339111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	230	454	2	ENST00000342505.4:c.425dupA	p.Ile143AspfsTer9	p.I143Dfs*9	ENST00000342505	NM_002227.2	142	aag/aaAg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921618	39921618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201959477		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	203	426	0	ENST00000378444.4:c.4202C>T	p.Pro1401Leu	p.P1401L	ENST00000378444	NM_001123385.1	1401	cCg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	387	750	5	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68878170	68878170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138522390		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	132	263	0	ENST00000487270.1:c.883G>A	p.Ala295Thr	p.A295T	ENST00000487270	NM_133509.3	295	Gca/Aca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433722	49433722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	92	683	0	ENST00000301067.7:c.7831C>T	p.Arg2611Cys	p.R2611C	ENST00000301067	NM_003482.3	2611	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187560905	187560905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	159	332	0	ENST00000441802.2:c.3613C>T	p.Arg1205Ter	p.R1205*	ENST00000441802	NM_005245.3	1205	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879364	151879364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	190	369	0	ENST00000262189.6:c.5581C>T	p.Arg1861Trp	p.R1861W	ENST00000262189	NM_170606.2	1861	Cgg/Tgg																																																																														
TEK	7010	MSKCC	GRCh37	9	27212857	27212857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	238	529	1	ENST00000380036.4:c.2839G>A	p.Asp947Asn	p.D947N	ENST00000380036	NM_000459.3	947	Gac/Aac																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431665	6431665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	287	547	0	ENST00000356142.4:c.218C>T	p.Pro73Leu	p.P73L	ENST00000356142	NM_018890.3	73	cCg/cTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641468	18641468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	113	259	0	ENST00000266497.5:c.2467G>A	p.Ala823Thr	p.A823T	ENST00000266497		823	Gcc/Acc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163306549	163306549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	157	343	0	ENST00000271452.3:c.346C>T	p.Arg116Trp	p.R116W	ENST00000271452	NM_145697.2	116	Cgg/Tgg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520202	176520202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	349	694	1	ENST00000292408.4:c.1121C>T	p.Ala374Val	p.A374V	ENST00000292408	NM_213647.1	374	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578415	7578415	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	266	529	0	ENST00000269305.4:c.515T>C	p.Val172Ala	p.V172A	ENST00000269305	NM_001126112.2	172	gTt/gCt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3642782	3642782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	112	539	0	ENST00000294008.3:c.2245C>T	p.Arg749Cys	p.R749C	ENST00000294008	NM_032444.2	749	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057879	27057879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	305	651	0	ENST00000324856.7:c.1587G>T	p.Gln529His	p.Q529H	ENST00000324856	NM_006015.4	529	caG/caT																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806600	1806600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	280	575	0	ENST00000260795.2:c.1316G>A	p.Arg439His	p.R439H	ENST00000260795		439	cGc/cAc																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64290050	64290050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	75	435	1	ENST00000370651.3:c.493G>A	p.Gly165Ser	p.G165S	ENST00000370651	NM_003463.4	165	Ggt/Agt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99169415	99169415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	135	286	0	ENST00000074304.5:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000074304	NM_001134224.1	449	Gcc/Acc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298137	15298137	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200317373		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	321	596	1	ENST00000263388.2:c.1619C>T	p.Thr540Met	p.T540M	ENST00000263388	NM_000435.2	540	aCg/aTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948755	71948755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	263	550	1	ENST00000298229.2:c.3470del	p.Gly1157AspfsTer45	p.G1157Dfs*45	ENST00000298229	NM_001567.3	1156	cGg/cg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225997	53225997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	300	644	1	ENST00000375401.3:c.2852G>A	p.Arg951Gln	p.R951Q	ENST00000375401	NM_004187.3	951	cGa/cAa																																																																														
TET1	80312	MSKCC	GRCh37	10	70333089	70333089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	270	548	1	ENST00000373644.4:c.994G>A	p.Ala332Thr	p.A332T	ENST00000373644	NM_030625.2	332	Gca/Aca																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176490	123176490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	86	198	0	ENST00000218089.9:c.457G>A	p.Asp153Asn	p.D153N	ENST00000218089	NM_001042749.1	153	Gat/Aat																																																																														
SDHB	6390	MSKCC	GRCh37	1	17349218	17349218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	157	314	0	ENST00000375499.3:c.650G>A	p.Arg217His	p.R217H	ENST00000375499	NM_003000.2	217	cGc/cAc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915579	131915579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28903087		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	57	168	0	ENST00000265335.6:c.577C>T	p.Arg193Trp	p.R193W	ENST00000265335		193	Cgg/Tgg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779704	3779704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	283	529	0	ENST00000262367.5:c.5344G>A	p.Ala1782Thr	p.A1782T	ENST00000262367	NM_004380.2	1782	Gcg/Acg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724611	162724611	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149507401		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	175	334	0	ENST00000367921.3:c.383G>A	p.Arg128His	p.R128H	ENST00000367921	NM_006182.2	128	cGc/cAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95596505	95596505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	24	171	0	ENST00000343455.3:c.463G>A	p.Ala155Thr	p.A155T	ENST00000343455	NM_177438.2	155	Gcc/Acc																																																																														
PARP1	142	MSKCC	GRCh37	1	226555911	226555911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	236	341	0	ENST00000366794.5:c.2266G>A	p.Asp756Asn	p.D756N	ENST00000366794	NM_001618.3	756	Gac/Aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140481405	140481405	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	185	304	0	ENST00000288602.6:c.1403T>C	p.Phe468Ser	p.F468S	ENST00000288602	NM_004333.4	468	tTt/tCt																																																																														
MGA	23269	MSKCC	GRCh37	15	42005368	42005368	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	30	358	0	ENST00000219905.7:c.3104C>A	p.Pro1035His	p.P1035H	ENST00000219905	NM_001164273.1	1035	cCt/cAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098936	47098936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	268	507	0	ENST00000409792.3:c.6338G>A	p.Arg2113His	p.R2113H	ENST00000409792	NM_014159.6	2113	cGc/cAc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073784	8073784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	140	285	0	ENST00000377482.5:c.875G>T	p.Arg292Ile	p.R292I	ENST00000377482	NM_018948.3	292	aGa/aTa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073845	8073845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	45	263	0	ENST00000377482.5:c.814G>A	p.Ala272Thr	p.A272T	ENST00000377482	NM_018948.3	272	Gct/Act																																																																														
MTOR	2475	MSKCC	GRCh37	1	11276280	11276280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	48	287	0	ENST00000361445.4:c.3042G>T	p.Gln1014His	p.Q1014H	ENST00000361445	NM_004958.3	1014	caG/caT																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298605	11298605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	228	460	0	ENST00000361445.4:c.1856G>A	p.Arg619His	p.R619H	ENST00000361445	NM_004958.3	619	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202960	16202960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	186	372	0	ENST00000375759.3:c.668A>G	p.Asp223Gly	p.D223G	ENST00000375759	NM_015001.2	223	gAt/gGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057951	27057951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	298	515	1	ENST00000324856.7:c.1659G>T	p.Gln553His	p.Q553H	ENST00000324856	NM_006015.4	553	caG/caT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099388	27099388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	228	375	0	ENST00000324856.7:c.3625C>A	p.Pro1209Thr	p.P1209T	ENST00000324856	NM_006015.4	1209	Cct/Act																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101326	27101326	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	261	451	0	ENST00000324856.7:c.4608T>G	p.Asp1536Glu	p.D1536E	ENST00000324856	NM_006015.4	1536	gaT/gaG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101513	27101513	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	304	539	0	ENST00000324856.7:c.4795A>G	p.Thr1599Ala	p.T1599A	ENST00000324856	NM_006015.4	1599	Acc/Gcc																																																																														
MPL	4352	MSKCC	GRCh37	1	43805768	43805768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	83	504	0	ENST00000372470.3:c.824C>A	p.Pro275His	p.P275H	ENST00000372470	NM_005373.2	275	cCt/cAt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332725	65332725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	168	318	0	ENST00000342505.4:c.814G>A	p.Ala272Thr	p.A272T	ENST00000342505	NM_002227.2	272	Gct/Act																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332823	65332823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	66	308	1	ENST00000342505.4:c.716G>A	p.Arg239Gln	p.R239Q	ENST00000342505	NM_002227.2	239	cGg/cAg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429363	78429363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	214	355	0	ENST00000370768.2:c.1079G>T	p.Gly360Val	p.G360V	ENST00000370768	NM_003902.3	360	gGa/gTa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115261316	115261316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	27	336	0	ENST00000438362.2:c.2405G>A	p.Arg802His	p.R802H	ENST00000438362	NM_001242891.1	802	cGc/cAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120463021	120463021	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	21	307	0	ENST00000256646.2:c.5311-1G>T		p.X1771_splice	ENST00000256646	NM_024408.3	1771																																																																															
DDR2	4921	MSKCC	GRCh37	1	162731140	162731140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	199	377	0	ENST00000367921.3:c.995G>A	p.Arg332Gln	p.R332Q	ENST00000367921	NM_006182.2	332	cGg/cAg																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176054999	176054999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	169	405	1	ENST00000367669.3:c.1054A>G	p.Thr352Ala	p.T352A	ENST00000367669	NM_022457.5	352	Acg/Gcg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983073	201983073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	269	482	0	ENST00000359651.3:c.922T>C	p.Ser308Pro	p.S308P	ENST00000359651		308	Tcc/Ccc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206653804	206653804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	224	462	1	ENST00000367120.3:c.1355C>T	p.Ala452Val	p.A452V	ENST00000367120	NM_014002.3	452	gCc/gTc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672001	88672001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	231	488	0	ENST00000372037.3:c.535T>C	p.Tyr179His	p.Y179H	ENST00000372037	NM_004329.2	179	Tat/Cat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624249	89624294	+	frameshift_variant	Frame_Shift_Del	DEL	TCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTT	TCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTT	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	97	172	0	ENST00000371953.3:c.23_68del	p.Ile8LysfsTer3	p.I8Kfs*3	ENST00000371953	NM_000314.4	8	aTCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTa/aa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154369	2154369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	318	682	0	ENST00000434045.2:c.559C>T	p.Pro187Ser	p.P187S	ENST00000434045	NM_001127598.1	187	Cct/Tct																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196997	67196997	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	45	274	0	ENST00000312629.5:c.241-1G>T		p.X81_splice	ENST00000312629	NM_003952.2	81																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941304	71941304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	78	487	0	ENST00000298229.2:c.1079C>T	p.Thr360Met	p.T360M	ENST00000298229	NM_001567.3	360	aCg/aTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946480	71946480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	256	445	0	ENST00000298229.2:c.2644C>T	p.Arg882Cys	p.R882C	ENST00000298229	NM_001567.3	882	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108155098	108155098	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	140	372	0	ENST00000278616.4:c.3894del	p.Phe1298LeufsTer51	p.F1298Lfs*51	ENST00000278616	NM_000051.3	1297	taT/ta																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375636	118375636	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	25	302	0	ENST00000534358.1:c.9029C>A	p.Pro3010His	p.P3010H	ENST00000534358	NM_005933.3	3010	cCt/cAt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	394823	394823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	138	327	0	ENST00000399788.2:c.4872C>A	p.Asp1624Glu	p.D1624E	ENST00000399788	NM_001042603.1	1624	gaC/gaA																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992167	11992167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	29	345	0	ENST00000396373.4:c.257C>T	p.Thr86Met	p.T86M	ENST00000396373	NM_001987.4	86	aCg/aTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499658	18499658	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	176	380	0	ENST00000266497.5:c.1513T>C	p.Phe505Leu	p.F505L	ENST00000266497		505	Ttt/Ctt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21626490	21626490	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	195	400	0	ENST00000421138.2:c.1442A>G	p.Asp481Gly	p.D481G	ENST00000421138		481	gAc/gGc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230433	46230434	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	63	267	0	ENST00000334344.6:c.767_768delinsAC	p.Ser256Tyr	p.S256Y	ENST00000334344	NM_152641.2	256	tCT/tAC																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480543	50480543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	171	343	1	ENST00000394963.4:c.413G>A	p.Arg138His	p.R138H	ENST00000394963	NM_003076.4	138	cGt/cAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478878	56478878	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	309	619	0	ENST00000267101.3:c.334G>T	p.Asp112Tyr	p.D112Y	ENST00000267101	NM_001982.3	112	Gat/Tat																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495609	56495609	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	181	406	0	ENST00000267101.3:c.3799C>T	p.Arg1267Ter	p.R1267*	ENST00000267101	NM_001982.3	1267	Cga/Tga																																																																														
MDM2	4193	MSKCC	GRCh37	12	69229674	69229674	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	186	390	0	ENST00000462284.1:c.750G>T	p.Gln250His	p.Q250H	ENST00000462284	NM_002392.5	250	caG/caT																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233088	69233088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	38	289	0	ENST00000462284.1:c.953A>G	p.Asn318Ser	p.N318S	ENST00000462284	NM_002392.5	318	aAt/aGt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121437173	121437173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	145	639	0	ENST00000257555.6:c.1604G>A	p.Ser535Asn	p.S535N	ENST00000257555		535	aGc/aAc																																																																														
SETD8	387893	MSKCC	GRCh37	12	123875258	123875258	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	45	115	0	ENST00000330479.4:c.214G>T	p.Glu72Ter	p.E72*	ENST00000330479	NM_020382.3	72	Gaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133252325	133252325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	165	349	0	ENST00000320574.5:c.1102G>A	p.Asp368Asn	p.D368N	ENST00000320574	NM_006231.2	368	Gac/Aac																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562086	21562086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	469	788	2	ENST00000382592.4:c.1833G>T	p.Glu611Asp	p.E611D	ENST00000382592	NM_014572.2	611	gaG/gaT																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588620	28588620	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	35	299	0	ENST00000241453.7:c.2828del	p.Leu943Ter	p.L943*	ENST00000241453	NM_004119.2	943	tTa/ta																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623877	28623877	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	188	427	0	ENST00000241453.7:c.777A>C	p.Gln259His	p.Q259H	ENST00000241453	NM_004119.2	259	caA/caC																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913989	32913989	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	114	368	0	ENST00000380152.3:c.5497A>G	p.Asn1833Asp	p.N1833D	ENST00000380152		1833	Aat/Gat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915043	32915043	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	143	390	0	ENST00000380152.3:c.6551A>G	p.Gln2184Arg	p.Q2184R	ENST00000380152		2184	cAg/cGg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133865	41133865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	46	271	0	ENST00000379561.5:c.1763G>A	p.Gly588Asp	p.G588D	ENST00000379561	NM_002015.3	588	gGc/gAc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528246	103528246	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	33	133	0	ENST00000355739.4:c.3554A>G	p.Lys1185Arg	p.K1185R	ENST00000355739	NM_000123.3	1185	aAa/aGa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436439	110436439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	53	703	0	ENST00000375856.3:c.1962G>A	p.Met654Ile	p.M654I	ENST00000375856	NM_003749.2	654	atG/atA																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100070	30100070	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	263	539	1	ENST00000331968.5:c.1550A>T	p.Asn517Ile	p.N517I	ENST00000331968	NM_002742.2	517	aAc/aTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557422	95557422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	190	338	0	ENST00000343455.3:c.5552G>A	p.Arg1851His	p.R1851H	ENST00000343455	NM_177438.2	1851	cGt/cAt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562862	95562862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	133	285	0	ENST00000343455.3:c.4395G>T	p.Lys1465Asn	p.K1465N	ENST00000343455	NM_177438.2	1465	aaG/aaT																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570351	95570351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	168	300	0	ENST00000343455.3:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000343455	NM_177438.2	1128	Gtc/Atc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643773	38643773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	67	593	0	ENST00000299084.4:c.1243C>A	p.Pro415Thr	p.P415T	ENST00000299084	NM_152594.2	415	Cca/Aca																																																																														
MGA	23269	MSKCC	GRCh37	15	42021547	42021547	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	94	399	1	ENST00000219905.7:c.3843G>T	p.Lys1281Asn	p.K1281N	ENST00000219905	NM_001164273.1	1281	aaG/aaT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712793	43712793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	48	556	0	ENST00000382044.4:c.4391G>A	p.Arg1464His	p.R1464H	ENST00000382044	NM_001141980.1	1464	cGt/cAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724658	43724658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	298	652	0	ENST00000382044.4:c.3409C>T	p.Arg1137Trp	p.R1137W	ENST00000382044	NM_001141980.1	1137	Cgg/Tgg																																																																														
CD276	80381	MSKCC	GRCh37	15	74000686	74000686	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	267	522	0	ENST00000318443.5:c.1376C>A	p.Pro459His	p.P459H	ENST00000318443	NM_001024736.1	459	cCt/cAt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799265	88799265	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	228	419	1	ENST00000360948.2:c.120G>T	p.Lys40Asn	p.K40N	ENST00000360948	NM_001012338.2	40	aaG/aaT																																																																														
BLM	641	MSKCC	GRCh37	15	91346837	91346837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	21	265	0	ENST00000355112.3:c.3445C>A	p.Leu1149Met	p.L1149M	ENST00000355112	NM_000057.2	1149	Ctg/Atg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251001	99251001	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	80	398	0	ENST00000268035.6:c.305A>G	p.Asn102Ser	p.N102S	ENST00000268035	NM_000875.3	102	aAc/aGc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347111	347111	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	385	762	0	ENST00000262320.3:c.1900C>T	p.Gln634Ter	p.Q634*	ENST00000262320	NM_003502.3	634	Cag/Tag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2106228	2106228	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	287	506	0	ENST00000219476.3:c.631T>C	p.Ser211Pro	p.S211P	ENST00000219476	NM_000548.3	211	Tcc/Ccc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2110744	2110744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	130	707	0	ENST00000219476.3:c.1049G>T	p.Arg350Met	p.R350M	ENST00000219476	NM_000548.3	350	aGg/aTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2122297	2122297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	323	661	0	ENST00000219476.3:c.2153G>A	p.Arg718His	p.R718H	ENST00000219476	NM_000548.3	718	cGc/cAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639236	3639236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	330	601	0	ENST00000294008.3:c.4403G>A	p.Arg1468His	p.R1468H	ENST00000294008	NM_032444.2	1468	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3801746	3801746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	206	379	0	ENST00000262367.5:c.3760G>A	p.Asp1254Asn	p.D1254N	ENST00000262367	NM_004380.2	1254	Gac/Aac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3823816	3823816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	78	471	0	ENST00000262367.5:c.2399C>T	p.Pro800Leu	p.P800L	ENST00000262367	NM_004380.2	800	cCg/cTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032323	10032323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	165	351	0	ENST00000330684.3:c.500G>T	p.Trp167Leu	p.W167L	ENST00000330684	NM_001134407.1	167	tGg/tTg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041914	14041914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	65	273	0	ENST00000311895.7:c.2461C>T	p.Pro821Ser	p.P821S	ENST00000311895	NM_005236.2	821	Cca/Tca																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041930	14041930	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141790888		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	61	268	0	ENST00000311895.7:c.2477C>T	p.Ala826Val	p.A826V	ENST00000311895	NM_005236.2	826	gCg/gTg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632692	23632692	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	173	294	0	ENST00000261584.4:c.3104T>G	p.Ile1035Ser	p.I1035S	ENST00000261584	NM_024675.3	1035	aTt/aGt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67646008	67646008	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	178	287	0	ENST00000264010.4:c.937del	p.Asn314ThrfsTer19	p.N314Tfs*19	ENST00000264010	NM_006565.3	312	caC/ca																																																																														
CDH1	999	MSKCC	GRCh37	16	68853296	68853296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	232	375	0	ENST00000261769.5:c.1679C>T	p.Thr560Met	p.T560M	ENST00000261769	NM_004360.3	560	aCg/aTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828060	72828060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	380	728	1	ENST00000268489.5:c.8521G>T	p.Ala2841Ser	p.A2841S	ENST00000268489	NM_006885.3	2841	Gca/Tca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984384	72984384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	216	360	0	ENST00000268489.5:c.3200G>T	p.Ser1067Ile	p.S1067I	ENST00000268489	NM_006885.3	1067	aGc/aTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81957132	81957132	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	216	350	0	ENST00000359376.3:c.2350C>T	p.Arg784Ter	p.R784*	ENST00000359376	NM_002661.3	784	Cga/Tga																																																																														
FANCA	2175	MSKCC	GRCh37	16	89828418	89828418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	195	409	0	ENST00000389301.3:c.2791G>A	p.Asp931Asn	p.D931N	ENST00000389301	NM_000135.2	931	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7573979	7573979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	306	541	0	ENST00000269305.4:c.1048C>A	p.Leu350Ile	p.L350I	ENST00000269305	NM_001126112.2	350	Ctc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578182	7578182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	252	431	0	ENST00000269305.4:c.667C>A	p.Pro223Thr	p.P223T	ENST00000269305	NM_001126112.2	223	Cct/Act																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110176	8110176	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	221	415	0	ENST00000585124.1:c.429T>G	p.Tyr143Ter	p.Y143*	ENST00000585124	NM_004217.3	143	taT/taG																																																																														
NF1	4763	MSKCC	GRCh37	17	29556392	29556392	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	213	443	0	ENST00000358273.4:c.2759T>C	p.Leu920Pro	p.L920P	ENST00000358273	NM_001042492.2	920	cTg/cCg																																																																														
NF1	4763	MSKCC	GRCh37	17	29560200	29560200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	114	234	0	ENST00000358273.4:c.3677C>A	p.Ala1226Asp	p.A1226D	ENST00000358273	NM_001042492.2	1226	gCt/gAt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619187	37619187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	57	338	0	ENST00000447079.4:c.863G>T	p.Ser288Ile	p.S288I	ENST00000447079	NM_015083.1	288	aGc/aTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883965	37883965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	260	502	1	ENST00000269571.5:c.3436C>T	p.Arg1146Trp	p.R1146W	ENST00000269571		1146	Cgg/Tgg																																																																														
RARA	5914	MSKCC	GRCh37	17	38504716	38504716	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	219	424	0	ENST00000254066.5:c.327G>T	p.Lys109Asn	p.K109N	ENST00000254066	NM_000964.3	109	aaG/aaT																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441476	40441476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	249	510	0	ENST00000345506.4:c.47G>A	p.Arg16His	p.R16H	ENST00000345506	NM_003152.3	16	cGc/cAc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441528	40441528	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	51	642	0	ENST00000345506.4:c.99C>A	p.Tyr33Ter	p.Y33*	ENST00000345506	NM_003152.3	33	taC/taA																																																																														
STAT3	6774	MSKCC	GRCh37	17	40481441	40481441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	178	410	0	ENST00000264657.5:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000264657	NM_139276.2	423	cGa/cAa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40485932	40485932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	99	513	1	ENST00000264657.5:c.933G>T	p.Glu311Asp	p.E311D	ENST00000264657	NM_139276.2	311	gaG/gaT																																																																														
STAT3	6774	MSKCC	GRCh37	17	40490819	40490819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	42	290	0	ENST00000264657.5:c.480G>T	p.Gln160His	p.Q160H	ENST00000264657	NM_139276.2	160	caG/caT																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688798	47688798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	142	216	0	ENST00000347630.2:c.502G>A	p.Val168Ile	p.V168I	ENST00000347630	NM_001007230.1	168	Gtc/Atc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435855	56435855	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	179	410	0	ENST00000407977.2:c.1282C>A	p.Pro428Thr	p.P428T	ENST00000407977		428	Cct/Act																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56811549	56811549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	68	334	0	ENST00000337432.4:c.1097G>A	p.Arg366Gln	p.R366Q	ENST00000337432	NM_058216.2	366	cGg/cAg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59770793	59770793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	35	275	0	ENST00000259008.2:c.2573C>A	p.Ser858Tyr	p.S858Y	ENST00000259008	NM_032043.2	858	tCt/tAt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78704375	78704375	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	141	311	0	ENST00000306801.3:c.523A>G	p.Ile175Val	p.I175V	ENST00000306801	NM_020761.2	175	Atc/Gtc																																																																														
YES1	7525	MSKCC	GRCh37	18	724503	724503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	61	307	0	ENST00000314574.4:c.1553C>T	p.Thr518Ile	p.T518I	ENST00000314574	NM_005433.3	518	aCa/aTa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39542530	39542530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	131	284	0	ENST00000262039.4:c.334G>A	p.Asp112Asn	p.D112N	ENST00000262039	NM_002647.2	112	Gat/Aat																																																																														
MALT1	10892	MSKCC	GRCh37	18	56390334	56390334	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	111	259	0	ENST00000348428.3:c.1073A>C	p.Lys358Thr	p.K358T	ENST00000348428	NM_006785.3	358	aAg/aCg																																																																														
INSR	3643	MSKCC	GRCh37	19	7141726	7141726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	272	514	0	ENST00000302850.5:c.2644G>A	p.Val882Met	p.V882M	ENST00000302850	NM_000208.2	882	Gtg/Atg																																																																														
INSR	3643	MSKCC	GRCh37	19	7141791	7141791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	42	481	0	ENST00000302850.5:c.2579A>G	p.Glu860Gly	p.E860G	ENST00000302850	NM_000208.2	860	gAa/gGa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246943	10246943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	113	448	0	ENST00000340748.4:c.4462G>A	p.Ala1488Thr	p.A1488T	ENST00000340748		1488	Gca/Aca																																																																														
CALR	811	MSKCC	GRCh37	19	13051113	13051113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	75	397	0	ENST00000316448.5:c.549G>T	p.Glu183Asp	p.E183D	ENST00000316448	NM_004343.3	183	gaG/gaT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298041	15298041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	162	669	1	ENST00000263388.2:c.1715C>A	p.Pro572His	p.P572H	ENST00000263388	NM_000435.2	572	cCt/cAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302610	15302611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	144	656	0	ENST00000263388.2:c.747dup	p.Thr250AspfsTer10	p.T250Dfs*10	ENST00000263388	NM_000435.2	249	-/G																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354106	15354106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	235	506	1	ENST00000263377.2:c.2774C>T	p.Ser925Phe	p.S925F	ENST00000263377	NM_058243.2	925	tCc/tTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366150	15366150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	253	453	1	ENST00000263377.2:c.2005C>T	p.Arg669Cys	p.R669C	ENST00000263377	NM_058243.2	669	Cgc/Tgc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943365	17943365	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	310	493	0	ENST00000458235.1:c.2643T>G	p.Asp881Glu	p.D881E	ENST00000458235	NM_000215.3	881	gaT/gaG																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945688	17945688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	218	480	0	ENST00000458235.1:c.2172G>T	p.Met724Ile	p.M724I	ENST00000458235	NM_000215.3	724	atG/atT																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273238	18273238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	208	355	0	ENST00000222254.8:c.1031T>C	p.Leu344Pro	p.L344P	ENST00000222254	NM_005027.3	344	cTc/cCc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18956828	18956828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	234	415	0	ENST00000262803.5:c.271G>A	p.Asp91Asn	p.D91N	ENST00000262803	NM_002911.3	91	Gac/Aac																																																																														
UPF1	5976	MSKCC	GRCh37	19	18972899	18972899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	87	540	0	ENST00000262803.5:c.2538G>T	p.Glu846Asp	p.E846D	ENST00000262803	NM_002911.3	846	gaG/gaT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210722	36210722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201092669		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	283	516	1	ENST00000222270.7:c.473C>T	p.Thr158Met	p.T158M	ENST00000222270	NM_014727.1	158	aCg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212581	36212581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	347	721	2	ENST00000222270.7:c.2332G>A	p.Ala778Thr	p.A778T	ENST00000222270	NM_014727.1	778	Gcg/Acg																																																																														
AXL	558	MSKCC	GRCh37	19	41754708	41754708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	246	474	0	ENST00000301178.4:c.1694C>A	p.Ala565Asp	p.A565D	ENST00000301178	NM_021913.4	565	gCt/gAt																																																																														
ERF	2077	MSKCC	GRCh37	19	42752749	42752749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	127	631	0	ENST00000222329.4:c.1515G>T	p.Glu505Asp	p.E505D	ENST00000222329	NM_006494.2	505	gaG/gaT																																																																														
CIC	23152	MSKCC	GRCh37	19	42791539	42791539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	297	558	1	ENST00000575354.2:c.520C>A	p.Leu174Ile	p.L174I	ENST00000575354	NM_015125.3	174	Ctc/Atc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791775	42791775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	250	493	0	ENST00000575354.2:c.661C>T	p.Arg221Cys	p.R221C	ENST00000575354	NM_015125.3	221	Cgt/Tgt																																																																														
CIC	23152	MSKCC	GRCh37	19	42798337	42798337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	263	503	0	ENST00000575354.2:c.4208C>A	p.Ala1403Glu	p.A1403E	ENST00000575354	NM_015125.3	1403	gCa/gAa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52724364	52724364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	152	318	0	ENST00000322088.6:c.1496T>C	p.Met499Thr	p.M499T	ENST00000322088	NM_014225.5	499	aTg/aCg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965610	25965610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	298	471	0	ENST00000435504.4:c.3596C>T	p.Pro1199Leu	p.P1199L	ENST00000435504		1199	cCc/cTc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26101081	26101081	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	62	408	1	ENST00000435504.4:c.11del	p.Lys4ArgfsTer18	p.K4Rfs*18	ENST00000435504		4	aAg/ag																																																																														
ALK	238	MSKCC	GRCh37	2	29450540	29450540	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	276	472	0	ENST00000389048.3:c.2816-2A>G		p.X939_splice	ENST00000389048	NM_004304.4	939																																																																															
MSH2	4436	MSKCC	GRCh37	2	47630379	47630379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	241	459	0	ENST00000233146.2:c.49G>A	p.Val17Ile	p.V17I	ENST00000233146	NM_000251.2	17	Gtc/Atc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47635624	47635624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	255	445	0	ENST00000233146.2:c.296G>A	p.Arg99Lys	p.R99K	ENST00000233146	NM_000251.2	99	aGa/aAa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170937	99170937	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	218	364	0	ENST00000074304.5:c.1566G>A	p.Trp522Ter	p.W522*	ENST00000074304	NM_001134224.1	522	tgG/tgA																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182103	99182103	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	147	231	0	ENST00000074304.5:c.2168G>T	p.Gly723Val	p.G723V	ENST00000074304	NM_001134224.1	723	gGg/gTg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038178	128038178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	192	329	0	ENST00000285398.2:c.1372G>A	p.Val458Met	p.V458M	ENST00000285398	NM_000122.1	458	Gtg/Atg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273113	198273113	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	207	470	0	ENST00000335508.6:c.1097A>G	p.Asn366Ser	p.N366S	ENST00000335508	NM_012433.2	366	aAc/aGc																																																																														
CASP8	841	MSKCC	GRCh37	2	202136311	202136311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	223	464	0	ENST00000358485.4:c.555G>T	p.Glu185Asp	p.E185D	ENST00000358485	NM_001080125.1	185	gaG/gaT																																																																														
IDH1	3417	MSKCC	GRCh37	2	209108254	209108254	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	33	415	0	ENST00000345146.2:c.595A>T	p.Met199Leu	p.M199L	ENST00000345146	NM_005896.2	199	Atg/Ttg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812322	212812322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	92	212	0	ENST00000342788.4:c.254G>A	p.Gly85Asp	p.G85D	ENST00000342788	NM_005235.2	85	gGc/gAc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660201	227660201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	289	620	0	ENST00000305123.5:c.3254C>T	p.Ala1085Val	p.A1085V	ENST00000305123	NM_005544.2	1085	gCc/gTc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46252826	46252826	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	54	133	0	ENST00000371998.3:c.255A>C	p.Gln85His	p.Q85H	ENST00000371998		85	caA/caC																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46266392	46266392	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	15	266	0	ENST00000371998.3:c.2377G>A	p.Gly793Arg	p.G793R	ENST00000371998		793	Gga/Aga																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62305391	62305391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	262	526	0	ENST00000508582.2:c.936G>T	p.Lys312Asn	p.K312N	ENST00000508582		312	aaG/aaT																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319084	62319084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	49	559	0	ENST00000508582.2:c.1514C>T	p.Thr505Met	p.T505M	ENST00000508582		505	aCg/aTg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62320883	62320883	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200847054		P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	350	635	0	ENST00000508582.2:c.1979C>T	p.Thr660Met	p.T660M	ENST00000508582		660	aCg/aTg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62324257	62324257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	46	619	0	ENST00000508582.2:c.2824G>T	p.Ala942Ser	p.A942S	ENST00000508582		942	Gcc/Tcc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326795	62326795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	325	614	1	ENST00000508582.2:c.3686C>T	p.Ser1229Phe	p.S1229F	ENST00000508582		1229	tCc/tTc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24145515	24145515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	93	489	1	ENST00000263121.7:c.534G>T	p.Glu178Asp	p.E178D	ENST00000263121	NM_003073.3	178	gaG/gaT																																																																														
NF2	4771	MSKCC	GRCh37	22	30054251	30054251	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	196	398	0	ENST00000338641.4:c.673C>T	p.Arg225Trp	p.R225W	ENST00000338641	NM_000268.3	225	Cgg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41523573	41523573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	229	469	0	ENST00000263253.7:c.989C>A	p.Ala330Asp	p.A330D	ENST00000263253	NM_001429.3	330	gCt/gAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41553339	41553339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	220	408	0	ENST00000263253.7:c.3428C>A	p.Ser1143Tyr	p.S1143Y	ENST00000263253	NM_001429.3	1143	tCc/tAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574893	41574893	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	241	411	0	ENST00000263253.7:c.7178T>C	p.Leu2393Pro	p.L2393P	ENST00000263253	NM_001429.3	2393	cTg/cCg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626032	12626032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	187	280	0	ENST00000251849.4:c.1928C>T	p.Pro643Leu	p.P643L	ENST00000251849	NM_002880.3	643	cCg/cTg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626104	12626104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	167	253	0	ENST00000251849.4:c.1856G>T	p.Ser619Ile	p.S619I	ENST00000251849	NM_002880.3	619	aGc/aTc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729897	30729897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	42	245	0	ENST00000359013.4:c.1493C>T	p.Pro498Leu	p.P498L	ENST00000359013	NM_001024847.2	498	cCa/cTa																																																																														
RHOA	387	MSKCC	GRCh37	3	49397763	49397763	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	283	500	0	ENST00000418115.1:c.461T>C	p.Phe154Ser	p.F154S	ENST00000418115	NM_001664.2	154	tTt/tCt																																																																														
RHOA	387	MSKCC	GRCh37	3	49412890	49412890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	277	538	0	ENST00000418115.1:c.133G>T	p.Asp45Tyr	p.D45Y	ENST00000418115	NM_001664.2	45	Gat/Tat																																																																														
MST1R	4486	MSKCC	GRCh37	3	49924833	49924833	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	48	658	0	ENST00000296474.3:c.4110G>T	p.Glu1370Asp	p.E1370D	ENST00000296474	NM_002447.2	1370	gaG/gaT																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935107	49935107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	61	383	0	ENST00000296474.3:c.1892G>A	p.Arg631Gln	p.R631Q	ENST00000296474	NM_002447.2	631	cGg/cAg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935997	49935997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	310	503	1	ENST00000296474.3:c.1673G>A	p.Cys558Tyr	p.C558Y	ENST00000296474	NM_002447.2	558	tGt/tAt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49939848	49939848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	300	533	2	ENST00000296474.3:c.1195G>A	p.Asp399Asn	p.D399N	ENST00000296474	NM_002447.2	399	Gac/Aac																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643641	52643641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	67	434	0	ENST00000394830.3:c.2255T>C	p.Leu752Pro	p.L752P	ENST00000394830	NM_018313.4	752	cTa/cCa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71008537	71008537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	130	211	0	ENST00000318789.4:c.1895C>T	p.Pro632Leu	p.P632L	ENST00000318789	NM_032682.5	632	cCt/cTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259485	89259485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	203	382	0	ENST00000336596.2:c.629C>T	p.Ala210Val	p.A210V	ENST00000336596	NM_005233.5	210	gCt/gTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967204	134967204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	172	299	0	ENST00000398015.3:c.2543A>T	p.Asp848Val	p.D848V	ENST00000398015	NM_004441.4	848	gAc/gTc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403636	138403636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	144	343	0	ENST00000289153.2:c.2146C>T	p.Leu716Phe	p.L716F	ENST00000289153	NM_006219.2	716	Ctc/Ttc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431047	181431047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	271	464	0	ENST00000325404.1:c.899G>A	p.Ser300Asn	p.S300N	ENST00000325404	NM_003106.3	300	aGc/aAc																																																																														
BCL6	604	MSKCC	GRCh37	3	187443304	187443304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	162	229	0	ENST00000232014.4:c.1822G>A	p.Gly608Arg	p.G608R	ENST00000232014	NM_001130845.1	608	Gga/Aga																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1957419	1957419	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	166	363	2	ENST00000382891.5:c.2523del		p.X841_splice	ENST00000382891	NM_133335.3	841																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41749524	41749524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	224	460	0	ENST00000226382.2:c.271G>A	p.Gly91Ser	p.G91S	ENST00000226382	NM_003924.3	91	Ggc/Agc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146559	55146559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	175	320	0	ENST00000257290.5:c.2233A>G	p.Met745Val	p.M745V	ENST00000257290	NM_006206.4	745	Atg/Gtg																																																																														
KDR	3791	MSKCC	GRCh37	4	55974036	55974036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	159	327	0	ENST00000263923.4:c.1280C>A	p.Ser427Tyr	p.S427Y	ENST00000263923	NM_002253.2	427	tCt/tAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522472	187522472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	264	484	0	ENST00000441802.2:c.11591C>T	p.Thr3864Met	p.T3864M	ENST00000441802	NM_005245.3	3864	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535396	187535396	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	35	400	1	ENST00000441802.2:c.9178T>C	p.Tyr3060His	p.Y3060H	ENST00000441802	NM_005245.3	3060	Tac/Cac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629781	187629781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	42	476	0	ENST00000441802.2:c.1201G>A	p.Val401Ile	p.V401I	ENST00000441802	NM_005245.3	401	Gtt/Att																																																																														
TERT	7015	MSKCC	GRCh37	5	1279521	1279521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	313	647	1	ENST00000310581.5:c.2015G>A	p.Arg672His	p.R672H	ENST00000310581	NM_198253.2	672	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295364	1295364	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	162	287	0				ENST00000310581	NM_198253.2																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56178037	56178037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	24	313	0	ENST00000399503.3:c.3010C>T	p.His1004Tyr	p.H1004Y	ENST00000399503	NM_005921.1	1004	Cat/Tat																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189494	56189494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	58	299	0	ENST00000399503.3:c.4526G>A	p.Arg1509His	p.R1509H	ENST00000399503	NM_005921.1	1509	cGt/cAt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752780	57752780	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	148	230	0	ENST00000274289.3:c.1148A>C	p.Asp383Ala	p.D383A	ENST00000274289	NM_006622.3	383	gAc/gCc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755746	57755746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	282	507	0	ENST00000274289.3:c.41G>T	p.Ser14Ile	p.S14I	ENST00000274289	NM_006622.3	14	aGc/aTc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79966069	79966069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	189	380	0	ENST00000265081.6:c.733G>T	p.Asp245Tyr	p.D245Y	ENST00000265081	NM_002439.4	245	Gat/Tat																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627257	86627257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	146	274	0	ENST00000274376.6:c.632G>T	p.Arg211Leu	p.R211L	ENST00000274376	NM_002890.2	211	cGg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112176096	112176096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	137	296	0	ENST00000257430.4:c.4805C>A	p.Pro1602His	p.P1602H	ENST00000257430	NM_000038.5	1602	cCt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112176456	112176456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	102	241	0	ENST00000257430.4:c.5165A>G	p.Asp1722Gly	p.D1722G	ENST00000257430	NM_000038.5	1722	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112178237	112178237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	133	320	0	ENST00000257430.4:c.6946C>T	p.Pro2316Ser	p.P2316S	ENST00000257430	NM_000038.5	2316	Cca/Tca																																																																														
APC	324	MSKCC	GRCh37	5	112178387	112178387	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	56	257	0	ENST00000257430.4:c.7096T>C	p.Tyr2366His	p.Y2366H	ENST00000257430	NM_000038.5	2366	Tat/Cat																																																																														
RAD50	10111	MSKCC	GRCh37	5	131930572	131930572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	86	166	0	ENST00000265335.6:c.1805C>A	p.Ala602Asp	p.A602D	ENST00000265335		602	gCt/gAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131951696	131951696	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	62	154	0	ENST00000265335.6:c.3038T>C	p.Ile1013Thr	p.I1013T	ENST00000265335		1013	aTa/aCa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515210	149515210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	264	572	1	ENST00000261799.4:c.272C>A	p.Thr91Asn	p.T91N	ENST00000261799	NM_002609.3	91	aCt/aAt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518767	176518767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	232	535	0	ENST00000292408.4:c.685G>A	p.Ala229Thr	p.A229T	ENST00000292408	NM_213647.1	229	Gct/Act																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638344	176638344	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	272	485	0	ENST00000439151.2:c.2948del	p.Gly983ValfsTer57	p.G983Vfs*57	ENST00000439151	NM_022455.4	982	Ggg/gg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638971	176638971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	248	381	0	ENST00000439151.2:c.3571C>T	p.Leu1191Phe	p.L1191F	ENST00000439151	NM_022455.4	1191	Ctt/Ttt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047610	180047610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	188	359	0	ENST00000261937.6:c.2405G>T	p.Arg802Met	p.R802M	ENST00000261937	NM_182925.4	802	aGg/aTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180050947	180050947	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	60	603	0	ENST00000261937.6:c.1536G>T	p.Glu512Asp	p.E512D	ENST00000261937	NM_182925.4	512	gaG/gaT																																																																														
IRF4	3662	MSKCC	GRCh37	6	401554	401554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	159	309	0	ENST00000380956.4:c.876C>A	p.Phe292Leu	p.F292L	ENST00000380956	NM_001195286.1	292	ttC/ttA																																																																														
E2F3	1871	MSKCC	GRCh37	6	20488420	20488420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	167	306	1	ENST00000346618.3:c.1076G>T	p.Ser359Ile	p.S359I	ENST00000346618	NM_001949.4	359	aGt/aTt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056108	26056108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	93	403	0	ENST00000343677.2:c.549G>T	p.Lys183Asn	p.K183N	ENST00000343677	NM_005319.3	183	aaG/aaT																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839945	27839945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	244	573	0	ENST00000328488.2:c.149G>A	p.Arg50His	p.R50H	ENST00000328488	NM_003533.2	50	cGc/cAc																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858362	27858362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	209	410	0	ENST00000359303.2:c.209G>A	p.Arg70His	p.R70H	ENST00000359303	NM_003535.2	70	cGc/cAc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672468	30672468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	339	558	0	ENST00000376406.3:c.4492G>A	p.Ala1498Thr	p.A1498T	ENST00000376406	NM_014641.2	1498	Gct/Act																																																																														
STK19	8859	MSKCC	GRCh37	6	31939995	31939995	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	33	441	1	ENST00000375331.2:c.220+2T>C		p.X74_splice	ENST00000375331	NM_004197.1	74																																																																															
SESN1	27244	MSKCC	GRCh37	6	109311953	109311953	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	94	423	0	ENST00000436639.2:c.1319T>C	p.Ile440Thr	p.I440T	ENST00000436639	NM_014454.2	440	aTt/aCt																																																																														
FYN	2534	MSKCC	GRCh37	6	112041051	112041051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	174	342	0	ENST00000368678.4:c.204C>A	p.Asn68Lys	p.N68K	ENST00000368678		68	aaC/aaA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642443	117642443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	146	564	1	ENST00000368508.3:c.5756C>T	p.Ala1919Val	p.A1919V	ENST00000368508	NM_002944.2	1919	gCt/gTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704501	117704501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	66	278	0	ENST00000368508.3:c.2475G>T	p.Gln825His	p.Q825H	ENST00000368508	NM_002944.2	825	caG/caT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710519	117710519	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	54	110	0	ENST00000368508.3:c.1753G>T	p.Gly585Ter	p.G585*	ENST00000368508	NM_002944.2	585	Gga/Tga																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196945	138196945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	120	230	0	ENST00000237289.4:c.607C>A	p.Leu203Ile	p.L203I	ENST00000237289	NM_001270507.1	203	Ctc/Atc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129155	152129155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	229	598	1	ENST00000206249.3:c.108G>T	p.Glu36Asp	p.E36D	ENST00000206249	NM_000125.3	36	gaG/gaT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099193	157099193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	219	408	0	ENST00000346085.5:c.130G>A	p.Ala44Thr	p.A44T	ENST00000346085	NM_020732.3	44	Gca/Aca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959178	2959178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	121	507	1	ENST00000396946.4:c.2338C>A	p.Leu780Met	p.L780M	ENST00000396946	NM_032415.4	780	Ctg/Atg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983916	2983916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	346	642	0	ENST00000396946.4:c.614C>T	p.Ala205Val	p.A205V	ENST00000396946	NM_032415.4	205	gCc/gTc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026480	6026480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	166	260	0	ENST00000265849.7:c.1916G>A	p.Ser639Asn	p.S639N	ENST00000265849	NM_000535.5	639	aGt/aAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221755	55221755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	233	453	0	ENST00000275493.2:c.799C>A	p.Leu267Ile	p.L267I	ENST00000275493	NM_005228.3	267	Ctc/Atc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223527	55223527	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	288	558	0	ENST00000275493.2:c.894T>G	p.Asn298Lys	p.N298K	ENST00000275493	NM_005228.3	298	aaT/aaG																																																																														
HGF	3082	MSKCC	GRCh37	7	81374430	81374430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	145	291	0	ENST00000222390.5:c.632G>A	p.Cys211Tyr	p.C211Y	ENST00000222390	NM_000601.4	211	tGc/tAc																																																																														
MET	4233	MSKCC	GRCh37	7	116414544	116414544	+	intron_variant	Intron	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	303	650	0	ENST00000397752.3:c.3029-391T>C		p.*1010*	ENST00000397752	NM_000245.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151871280	151871280	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	35	378	0	ENST00000262189.6:c.9310C>A	p.Leu3104Ile	p.L3104I	ENST00000262189	NM_170606.2	3104	Ctt/Att																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873340	151873340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	165	249	0	ENST00000262189.6:c.9198G>T	p.Gln3066His	p.Q3066H	ENST00000262189	NM_170606.2	3066	caG/caT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151947030	151947030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	143	315	0	ENST00000262189.6:c.1744G>A	p.Val582Ile	p.V582I	ENST00000262189	NM_170606.2	582	Gtc/Atc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132849	152132849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	83	463	0	ENST00000262189.6:c.23G>T	p.Ser8Ile	p.S8I	ENST00000262189	NM_170606.2	8	aGc/aTc																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29195949	29195949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	292	589	0	ENST00000240100.2:c.649C>A	p.Leu217Met	p.L217M	ENST00000240100	NM_001394.6	217	Ctg/Atg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38133295	38133295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	112	412	0	ENST00000317025.8:c.4178C>T	p.Ala1393Val	p.A1393V	ENST00000317025	NM_023034.1	1393	gCc/gTc																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38153343	38153343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	121	450	0	ENST00000317025.8:c.2886G>T	p.Gln962His	p.Q962H	ENST00000317025	NM_023034.1	962	caG/caT																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38277205	38277205	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	82	506	0	ENST00000425967.3:c.1223T>G	p.Ile408Ser	p.I408S	ENST00000425967	NM_001174067.1	408	aTc/aGc																																																																														
LYN	4067	MSKCC	GRCh37	8	56854541	56854541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	130	276	0	ENST00000519728.1:c.123G>T	p.Gln41His	p.Q41H	ENST00000519728	NM_002350.3	41	caG/caT																																																																														
AGO2	27161	MSKCC	GRCh37	8	141568606	141568606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	85	428	0	ENST00000220592.5:c.856C>T	p.Arg286Trp	p.R286W	ENST00000220592	NM_012154.3	286	Cgg/Tgg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090823	5090823	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	18	202	0	ENST00000381652.3:c.2974del	p.Ile992LeufsTer6	p.I992Lfs*6	ENST00000381652	NM_004972.3	991	Aaa/aa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460555	8460555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	47	273	0	ENST00000356435.5:c.3731G>T	p.Ser1244Ile	p.S1244I	ENST00000356435		1244	aGc/aTc																																																																														
TEK	7010	MSKCC	GRCh37	9	27220053	27220053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	179	393	0	ENST00000380036.4:c.3110C>T	p.Thr1037Ile	p.T1037I	ENST00000380036	NM_000459.3	1037	aCa/aTa																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923371	36923371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	40	454	0	ENST00000358127.4:c.891G>C	p.Gln297His	p.Q297H	ENST00000358127	NM_001280556.1	297	caG/caC																																																																														
SYK	6850	MSKCC	GRCh37	9	93624627	93624627	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	113	205	0	ENST00000375746.1:c.717+1G>A		p.X239_splice	ENST00000375746	NM_001174167.1	239																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900356	101900356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	116	233	0	ENST00000374994.4:c.790G>A	p.Ala264Thr	p.A264T	ENST00000374994	NM_004612.2	264	Gca/Aca																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101910008	101910008	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	84	175	0	ENST00000374994.4:c.1328A>C	p.Lys443Thr	p.K443T	ENST00000374994	NM_004612.2	443	aAa/aCa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248156	110248156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	170	327	0	ENST00000374672.4:c.1316G>A	p.Arg439His	p.R439H	ENST00000374672	NM_004235.4	439	cGc/cAc																																																																														
ABL1	25	MSKCC	GRCh37	9	133738249	133738249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	99	378	0	ENST00000318560.5:c.649G>A	p.Ala217Thr	p.A217T	ENST00000318560	NM_005157.4	217	Gcc/Acc																																																																														
ABL1	25	MSKCC	GRCh37	9	133759758	133759758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	182	395	0	ENST00000318560.5:c.2081C>A	p.Thr694Asn	p.T694N	ENST00000318560	NM_005157.4	694	aCc/aAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404322	139404322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	133	562	2	ENST00000277541.6:c.2832G>T	p.Glu944Asp	p.E944D	ENST00000277541	NM_017617.3	944	gaG/gaT																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15833835	15833835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	101	458	0	ENST00000307771.7:c.593C>A	p.Pro198His	p.P198H	ENST00000307771	NM_005089.3	198	cCt/cAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932533	39932533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	274	592	0	ENST00000378444.4:c.2066G>A	p.Gly689Asp	p.G689D	ENST00000378444	NM_001123385.1	689	gGc/gAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44833962	44833962	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	205	454	0	ENST00000377967.4:c.384+2T>C		p.X128_splice	ENST00000377967	NM_021140.2	128																																																																															
RBM10	8241	MSKCC	GRCh37	X	47041602	47041602	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	305	523	0	ENST00000329236.7:c.1593T>G	p.Asp531Glu	p.D531E	ENST00000329236	NM_001204466.1	531	gaT/gaG																																																																														
ARAF	369	MSKCC	GRCh37	X	47430720	47430720	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	86	524	0	ENST00000377045.4:c.1687-2A>G		p.X563_splice	ENST00000377045	NM_001654.4	563																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53225997	53225998	+	stop_gained	Nonsense_Mutation	DNP	CG	CG	TA			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	300	644	1	ENST00000375401.3:c.2851_2852delinsTA	p.Arg951Ter	p.R951*	ENST00000375401	NM_004187.3	951	CGa/TAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409767	63409767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	122	252	0	ENST00000330258.3:c.3400G>T	p.Ala1134Ser	p.A1134S	ENST00000330258	NM_152424.3	1134	Gcc/Tcc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411069	63411069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	200	481	0	ENST00000330258.3:c.2098C>T	p.Pro700Ser	p.P700S	ENST00000330258	NM_152424.3	700	Cct/Tct																																																																														
MED12	9968	MSKCC	GRCh37	X	70345945	70345945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	194	463	0	ENST00000374080.3:c.2482G>T	p.Asp828Tyr	p.D828Y	ENST00000374080		828	Gat/Tat																																																																														
ATRX	546	MSKCC	GRCh37	X	76777770	76777770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	87	433	2	ENST00000373344.5:c.6946C>A	p.Leu2316Met	p.L2316M	ENST00000373344	NM_000489.3	2316	Ctg/Atg																																																																														
XIAP	331	MSKCC	GRCh37	X	123019861	123019861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	34	452	1	ENST00000355640.3:c.349G>T	p.Val117Phe	p.V117F	ENST00000355640		117	Gtt/Ttt																																																																														
XIAP	331	MSKCC	GRCh37	X	123020174	123020174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	293	546	0	ENST00000355640.3:c.662G>A	p.Arg221Lys	p.R221K	ENST00000355640		221	aGg/aAg																																																																														
XIAP	331	MSKCC	GRCh37	X	123040919	123040919	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	59	311	0	ENST00000355640.3:c.1382T>G	p.Val461Gly	p.V461G	ENST00000355640		461	gTt/gGt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225998	53225998	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	300	644	1	ENST00000375401.3:c.2851C>T	p.Arg951Ter	p.R951*	ENST00000375401	NM_004187.3	951	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230433	46230433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	63	266	0	ENST00000334344.6:c.767C>A	p.Ser256Tyr	p.S256Y	ENST00000334344	NM_152641.2	256	tCt/tAt																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2492096	2492097	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	67	582	0	ENST00000355716.4:c.500dupC	p.Thr169AspfsTer65	p.T169Dfs*65	ENST00000355716	NM_003820.2	165	tgc/tgCc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075573	8075573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	44	547	0	ENST00000377482.5:c.107G>T	p.Ser36Ile	p.S36I	ENST00000377482	NM_018948.3	36	aGt/aTt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784896	9784896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	35	676	0	ENST00000377346.4:c.2899C>A	p.Leu967Met	p.L967M	ENST00000377346	NM_005026.3	967	Ctg/Atg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187068	11187068	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	82	499	0	ENST00000361445.4:c.6350A>G	p.Gln2117Arg	p.Q2117R	ENST00000361445	NM_004958.3	2117	cAg/cGg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187864	11187864	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	41	453	0	ENST00000361445.4:c.6034-1G>T		p.X2012_splice	ENST00000361445	NM_004958.3	2012																																																																															
MTOR	2475	MSKCC	GRCh37	1	11294323	11294323	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	41	505	0	ENST00000361445.4:c.2209-1G>T		p.X737_splice	ENST00000361445	NM_004958.3	737																																																																															
MTOR	2475	MSKCC	GRCh37	1	11307962	11307962	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	42	486	0	ENST00000361445.4:c.1030G>T	p.Gly344Ter	p.G344*	ENST00000361445	NM_004958.3	344	Gga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317178	11317178	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	33	504	0	ENST00000361445.4:c.316A>G	p.Arg106Gly	p.R106G	ENST00000361445	NM_004958.3	106	Aga/Gga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255464	16255464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	52	457	0	ENST00000375759.3:c.2729C>T	p.Ser910Phe	p.S910F	ENST00000375759	NM_015001.2	910	tCt/tTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261251	16261251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	43	488	0	ENST00000375759.3:c.8516C>T	p.Pro2839Leu	p.P2839L	ENST00000375759	NM_015001.2	2839	cCg/cTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261744	16261744	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	28	550	0	ENST00000375759.3:c.9012del	p.Ser3006AlafsTer16	p.S3006Afs*16	ENST00000375759	NM_015001.2	3003	tcG/tc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088789	27088789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	41	487	1	ENST00000324856.7:c.2398G>A	p.Gly800Arg	p.G800R	ENST00000324856	NM_006015.4	800	Ggg/Agg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101405	27101405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	38	494	0	ENST00000324856.7:c.4687C>T	p.Pro1563Ser	p.P1563S	ENST00000324856	NM_006015.4	1563	Ccc/Tcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107006	27107006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	32	505	0	ENST00000324856.7:c.6617C>T	p.Thr2206Ile	p.T2206I	ENST00000324856	NM_006015.4	2206	aCa/aTa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36945038	36945038	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	34	669	0	ENST00000361632.4:c.60del	p.Gly21GlufsTer83	p.G21Efs*83	ENST00000361632		20	ccC/cc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46527599	46527599	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	44	454	0	ENST00000262741.5:c.764+2T>C		p.X255_splice	ENST00000262741	NM_003629.3	255																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739403	46739403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	34	483	0	ENST00000371975.4:c.1594C>A	p.Leu532Met	p.L532M	ENST00000371975	NM_003579.3	532	Ctg/Atg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	73	419	5	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
JAK1	3716	MSKCC	GRCh37	1	65313359	65313359	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	84	447	1	ENST00000342505.4:c.1756-1G>T		p.X586_splice	ENST00000342505	NM_002227.2	586																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	40	420	2	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058505	72058505	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	50	477	0	ENST00000357731.5:c.935T>A	p.Leu312His	p.L312H	ENST00000357731	NM_173808.2	312	cTt/cAt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429330	78429330	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	53	575	0	ENST00000370768.2:c.1112del	p.Gly371AspfsTer20	p.G371Dfs*20	ENST00000370768	NM_003902.3	371	gGa/ga																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430035	78430035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	22	312	0	ENST00000370768.2:c.844A>G	p.Ile282Val	p.I282V	ENST00000370768	NM_003902.3	282	Att/Gtt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273140	115273140	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	39	519	0	ENST00000438362.2:c.1318A>G	p.Thr440Ala	p.T440A	ENST00000438362	NM_001242891.1	440	Act/Gct																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115280598	115280598	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	51	594	1	ENST00000438362.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000438362	NM_001242891.1	145	Cga/Tga																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115282457	115282457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	45	527	0	ENST00000438362.2:c.193G>T	p.Gly65Cys	p.G65C	ENST00000438362	NM_001242891.1	65	Ggt/Tgt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120460367	120460367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	51	513	0	ENST00000256646.2:c.5948G>T	p.Trp1983Leu	p.W1983L	ENST00000256646	NM_024408.3	1983	tGg/tTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120461173	120461173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	44	385	0	ENST00000256646.2:c.5785C>A	p.Leu1929Met	p.L1929M	ENST00000256646	NM_024408.3	1929	Ctg/Atg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120478097	120478097	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs138122751		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	53	430	0	ENST00000256646.2:c.3653G>A	p.Arg1218Gln	p.R1218Q	ENST00000256646	NM_024408.3	1218	cGg/cAg																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874149	155874149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	44	613	0	ENST00000368323.3:c.382C>T	p.Pro128Ser	p.P128S	ENST00000368323	NM_006912.5	128	Cct/Tct																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846279	156846279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	48	726	1	ENST00000524377.1:c.1720C>T	p.Arg574Cys	p.R574C	ENST00000524377	NM_002529.3	574	Cgc/Tgc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724529	162724529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	78	535	0	ENST00000367921.3:c.301G>A	p.Gly101Arg	p.G101R	ENST00000367921	NM_006182.2	101	Ggg/Agg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729618	162729618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	42	490	0	ENST00000367921.3:c.704G>A	p.Gly235Asp	p.G235D	ENST00000367921	NM_006182.2	235	gGt/gAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162741999	162741999	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	43	477	1	ENST00000367921.3:c.1690A>T	p.Thr564Ser	p.T564S	ENST00000367921	NM_006182.2	564	Act/Tct																																																																														
DDR2	4921	MSKCC	GRCh37	1	162748401	162748401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	37	502	0	ENST00000367921.3:c.2315C>T	p.Ala772Val	p.A772V	ENST00000367921	NM_006182.2	772	gCc/gTc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163317611	163317611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	22	291	0	ENST00000271452.3:c.1007C>T	p.Thr336Ile	p.T336I	ENST00000271452	NM_145697.2	336	aCt/aTt																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175958556	175958556	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	52	520	0	ENST00000367669.3:c.1789G>T	p.Gly597Ter	p.G597*	ENST00000367669	NM_022457.5	597	Gga/Tga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193117013	193117013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	39	380	0	ENST00000367435.3:c.750del	p.Phe250LeufsTer7	p.F250Lfs*7	ENST00000367435	NM_024529.4	249	aTt/at																																																																														
PARP1	142	MSKCC	GRCh37	1	226578183	226578183	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	38	523	0	ENST00000366794.5:c.545A>C	p.Lys182Thr	p.K182T	ENST00000366794	NM_001618.3	182	aAg/aCg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246670393	246670393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	30	417	0	ENST00000388985.4:c.127G>A	p.Gly43Arg	p.G43R	ENST00000388985		43	Ggg/Agg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115832	8115832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	67	567	0	ENST00000346208.3:c.1178C>G	p.Pro393Arg	p.P393R	ENST00000346208		393	cCg/cGg																																																																														
RET	5979	MSKCC	GRCh37	10	43601828	43601828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	46	492	0	ENST00000355710.3:c.872C>T	p.Thr291Ile	p.T291I	ENST00000355710	NM_020975.4	291	aCc/aTc																																																																														
RET	5979	MSKCC	GRCh37	10	43604628	43604628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	33	641	1	ENST00000355710.3:c.1213C>T	p.Pro405Ser	p.P405S	ENST00000355710	NM_020975.4	405	Ccc/Tcc																																																																														
RET	5979	MSKCC	GRCh37	10	43619159	43619159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	82	573	0	ENST00000355710.3:c.2842G>T	p.Gly948Trp	p.G948W	ENST00000355710	NM_020975.4	948	Ggg/Tgg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851312	63851312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	47	576	0	ENST00000279873.7:c.2090C>T	p.Ser697Phe	p.S697F	ENST00000279873	NM_032199.2	697	tCc/tTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692769	89692769	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	88	449	0	ENST00000371953.3:c.254-1G>T		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692885	89692885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	55	319	0	ENST00000371953.3:c.369C>A	p.His123Gln	p.H123Q	ENST00000371953	NM_000314.4	123	caC/caA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692958	89692958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	61	487	0	ENST00000371953.3:c.442G>A	p.Ala148Thr	p.A148T	ENST00000371953	NM_000314.4	148	Gca/Aca																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925378	114925378	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	54	649	2	ENST00000543371.1:c.1456G>T	p.Asp486Tyr	p.D486Y	ENST00000543371	NM_001198531.1	486	Gat/Tat																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123256195	123256195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	30	428	0	ENST00000358487.5:c.1714C>A	p.Leu572Ile	p.L572I	ENST00000358487	NM_000141.4	572	Ctc/Atc																																																																														
WT1	7490	MSKCC	GRCh37	11	32417914	32417914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	48	544	0	ENST00000332351.3:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000332351	NM_024426.4	380	Cgg/Tgg																																																																														
WT1	7490	MSKCC	GRCh37	11	32449604	32449604	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	38	490	0	ENST00000332351.3:c.770G>A	p.Gly257Asp	p.G257D	ENST00000332351	NM_024426.4	257	gGt/gAt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575448	64575448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	44	660	0	ENST00000337652.1:c.584G>A	p.Gly195Glu	p.G195E	ENST00000337652	NM_130803.2	195	gGg/gAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941215	71941215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	41	781	2	ENST00000298229.2:c.990G>T	p.Gln330His	p.Q330H	ENST00000298229	NM_001567.3	330	caG/caT																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946340	71946340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	42	727	1	ENST00000298229.2:c.2504G>T	p.Gly835Val	p.G835V	ENST00000298229	NM_001567.3	835	gGg/gTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948185	71948185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	42	799	1	ENST00000298229.2:c.2897C>A	p.Ala966Asp	p.A966D	ENST00000298229	NM_001567.3	966	gCt/gAt																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94224025	94224025	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	89	529	0	ENST00000323929.3:c.127A>T	p.Ile43Phe	p.I43F	ENST00000323929	NM_005591.3	43	Att/Ttt																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94224041	94224041	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	85	527	0	ENST00000323929.3:c.111del	p.Phe37LeufsTer2	p.F37Lfs*2	ENST00000323929	NM_005591.3	37	ttT/tt																																																																														
PGR	5241	MSKCC	GRCh37	11	100962543	100962544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	44	626	1	ENST00000325455.5:c.1853dup	p.Asn618LysfsTer8	p.N618Kfs*8	ENST00000325455	NM_001202474.3	618	aac/aaAc																																																																														
PGR	5241	MSKCC	GRCh37	11	100999546	100999546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	39	862	6	ENST00000325455.5:c.256G>A	p.Ala86Thr	p.A86T	ENST00000325455	NM_001202474.3	86	Gca/Aca																																																																														
BIRC3	330	MSKCC	GRCh37	11	102207515	102207515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	39	485	0	ENST00000263464.3:c.1604C>A	p.Pro535His	p.P535H	ENST00000263464	NM_001165.4	535	cCc/cAc																																																																														
ATM	472	MSKCC	GRCh37	11	108124663	108124663	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201762714		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	100	513	0	ENST00000278616.4:c.2021A>G	p.His674Arg	p.H674R	ENST00000278616	NM_000051.3	674	cAc/cGc																																																																														
ATM	472	MSKCC	GRCh37	11	108129720	108129721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	53	577	0	ENST00000278616.4:c.2387dup	p.Asn796LysfsTer2	p.N796Kfs*2	ENST00000278616	NM_000051.3	795	cca/ccAa																																																																														
ATM	472	MSKCC	GRCh37	11	108142067	108142067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	54	590	1	ENST00000278616.4:c.3011G>T	p.Ser1004Ile	p.S1004I	ENST00000278616	NM_000051.3	1004	aGc/aTc																																																																														
ATM	472	MSKCC	GRCh37	11	108204642	108204642	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	63	316	0	ENST00000278616.4:c.7957A>G	p.Ile2653Val	p.I2653V	ENST00000278616	NM_000051.3	2653	Att/Gtt																																																																														
ATM	472	MSKCC	GRCh37	11	108216620	108216620	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	45	383	0	ENST00000278616.4:c.8569G>T	p.Ala2857Ser	p.A2857S	ENST00000278616	NM_000051.3	2857	Gct/Tct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343232	118343232	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	54	389	0	ENST00000534358.1:c.1361del	p.Pro454ArgfsTer113	p.P454Rfs*113	ENST00000534358	NM_005933.3	453	gCc/gc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343659	118343660	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	37	496	0	ENST00000534358.1:c.1790dup	p.Leu597PhefsTer22	p.L597Ffs*22	ENST00000534358	NM_005933.3	595	-/T																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344405	118344405	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	45	293	0	ENST00000534358.1:c.2531A>G	p.Gln844Arg	p.Q844R	ENST00000534358	NM_005933.3	844	cAg/cGg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118359383	118359383	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	46	456	0	ENST00000534358.1:c.4388del	p.Asn1463ThrfsTer123	p.N1463Tfs*123	ENST00000534358	NM_005933.3	1463	Aac/ac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373151	118373151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	65	402	1	ENST00000534358.1:c.6544G>A	p.Gly2182Ser	p.G2182S	ENST00000534358	NM_005933.3	2182	Ggt/Agt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374480	118374480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	70	454	0	ENST00000534358.1:c.7873C>T	p.Arg2625Cys	p.R2625C	ENST00000534358	NM_005933.3	2625	Cgt/Tgt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375790	118375790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	41	484	0	ENST00000534358.1:c.9183G>T	p.Gln3061His	p.Q3061H	ENST00000534358	NM_005933.3	3061	caG/caT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376607	118376607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	32	429	1	ENST00000534358.1:c.10000G>A	p.Val3334Met	p.V3334M	ENST00000534358	NM_005933.3	3334	Gtg/Atg																																																																														
CBL	867	MSKCC	GRCh37	11	119103402	119103402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	42	321	0	ENST00000264033.4:c.440C>A	p.Pro147His	p.P147H	ENST00000264033	NM_005188.3	147	cCt/cAt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125513732	125513732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	44	523	0	ENST00000428830.2:c.860C>T	p.Pro287Leu	p.P287L	ENST00000428830	NM_001114121.2	287	cCc/cTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416632	416632	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	54	366	0	ENST00000399788.2:c.3918T>A	p.Asn1306Lys	p.N1306K	ENST00000399788	NM_001042603.1	1306	aaT/aaA																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416753	416753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	31	368	1	ENST00000399788.2:c.3797C>T	p.Thr1266Ile	p.T1266I	ENST00000399788	NM_001042603.1	1266	aCa/aTa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	427457	427457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	73	684	0	ENST00000399788.2:c.2712G>T	p.Leu904Phe	p.L904F	ENST00000399788	NM_001042603.1	904	ttG/ttT																																																																														
KDM5A	5927	MSKCC	GRCh37	12	430161	430161	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	36	289	0	ENST00000399788.2:c.2541G>T	p.Lys847Asn	p.K847N	ENST00000399788	NM_001042603.1	847	aaG/aaT																																																																														
KDM5A	5927	MSKCC	GRCh37	12	438057	438057	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	42	489	0	ENST00000399788.2:c.1912G>T	p.Glu638Ter	p.E638*	ENST00000399788	NM_001042603.1	638	Gaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	475167	475167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	59	621	0	ENST00000399788.2:c.470T>C	p.Leu157Pro	p.L157P	ENST00000399788	NM_001042603.1	157	cTt/cCt																																																																														
CCND2	894	MSKCC	GRCh37	12	4383382	4383382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	26	506	0	ENST00000261254.3:c.176T>C	p.Val59Ala	p.V59A	ENST00000261254	NM_001759.3	59	gTg/gCg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022904	12022904	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	41	662	0	ENST00000396373.4:c.1009+1G>T		p.X337_splice	ENST00000396373	NM_001987.4	337																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18491482	18491482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	41	329	0	ENST00000266497.5:c.1395G>T	p.Glu465Asp	p.E465D	ENST00000266497		465	gaG/gaT																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499762	18499762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	47	326	0	ENST00000266497.5:c.1617G>T	p.Trp539Cys	p.W539C	ENST00000266497		539	tgG/tgT																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641388	18641389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	19	253	0	ENST00000266497.5:c.2393dup	p.Asn798LysfsTer5	p.N798Kfs*5	ENST00000266497		796	cta/ctAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650589	18650589	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	36	604	1	ENST00000266497.5:c.2800C>T	p.Gln934Ter	p.Q934*	ENST00000266497		934	Cag/Tag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658389	18658390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	30	396	1	ENST00000266497.5:c.3199dup	p.Arg1067LysfsTer38	p.R1067Kfs*38	ENST00000266497		1065	ata/atAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800873	18800873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	45	470	0	ENST00000266497.5:c.4249A>G	p.Thr1417Ala	p.T1417A	ENST00000266497		1417	Act/Gct																																																																														
RECQL	5965	MSKCC	GRCh37	12	21636509	21636509	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	55	406	1	ENST00000421138.2:c.502-1G>T		p.X168_splice	ENST00000421138		168																																																																															
RECQL	5965	MSKCC	GRCh37	12	21644451	21644451	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	27	331	0	ENST00000421138.2:c.214+2T>C		p.X72_splice	ENST00000421138		72																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31945067	31945067	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	34	662	0	ENST00000340398.3:c.34A>G	p.Thr12Ala	p.T12A	ENST00000340398	NM_001013699.2	12	Acc/Gcc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244335	46244335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	48	489	0	ENST00000334344.6:c.2429C>T	p.Ala810Val	p.A810V	ENST00000334344	NM_152641.2	810	gCa/gTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245312	46245312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	36	488	0	ENST00000334344.6:c.3406C>T	p.Pro1136Ser	p.P1136S	ENST00000334344	NM_152641.2	1136	Ccc/Tcc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285562	46285562	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T	rs79280775		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	31	283	1	ENST00000334344.6:c.4923-1G>T		p.X1641_splice	ENST00000334344	NM_152641.2	1641																																																																															
ARID2	196528	MSKCC	GRCh37	12	46298803	46298803	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	27	389	0	ENST00000334344.6:c.5451del	p.Glu1817AspfsTer22	p.E1817Dfs*22	ENST00000334344	NM_152641.2	1817	gAa/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415828	49415828	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	40	432	0	ENST00000301067.7:c.16519G>A	p.Glu5507Lys	p.E5507K	ENST00000301067	NM_003482.3	5507	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416416	49416416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	49	643	1	ENST00000301067.7:c.16295G>A	p.Arg5432Gln	p.R5432Q	ENST00000301067	NM_003482.3	5432	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422666	49422666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	35	671	4	ENST00000301067.7:c.14327A>G	p.Lys4776Arg	p.K4776R	ENST00000301067	NM_003482.3	4776	aAg/aGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422961	49422961	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	32	662	0	ENST00000301067.7:c.14134G>T	p.Glu4712Ter	p.E4712*	ENST00000301067	NM_003482.3	4712	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427974	49427974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	76	703	1	ENST00000301067.7:c.10616G>A	p.Arg3539Gln	p.R3539Q	ENST00000301067	NM_003482.3	3539	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431726	49431726	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	43	675	0	ENST00000301067.7:c.9413C>A	p.Thr3138Asn	p.T3138N	ENST00000301067	NM_003482.3	3138	aCc/aAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431947	49431947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	88	815	0	ENST00000301067.7:c.9192T>A	p.Asp3064Glu	p.D3064E	ENST00000301067	NM_003482.3	3064	gaT/gaA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434384	49434384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	34	635	0	ENST00000301067.7:c.7169C>T	p.Pro2390Leu	p.P2390L	ENST00000301067	NM_003482.3	2390	cCg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442994	49442994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	33	483	0	ENST00000301067.7:c.3914G>T	p.Ser1305Ile	p.S1305I	ENST00000301067	NM_003482.3	1305	aGc/aTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445168	49445168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	41	646	1	ENST00000301067.7:c.2298G>T	p.Glu766Asp	p.E766D	ENST00000301067	NM_003482.3	766	gaG/gaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445430	49445430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	81	811	3	ENST00000301067.7:c.2036C>A	p.Pro679His	p.P679H	ENST00000301067	NM_003482.3	679	cCc/cAc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50482318	50482318	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	69	450	0	ENST00000394963.4:c.669A>C	p.Lys223Asn	p.K223N	ENST00000394963	NM_003076.4	223	aaA/aaC																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861199	57861199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	54	484	0	ENST00000228682.2:c.996G>A	p.Met332Ile	p.M332I	ENST00000228682	NM_005269.2	332	atG/atA																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864144	57864144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	41	569	1	ENST00000228682.2:c.1621C>T	p.Arg541Cys	p.R541C	ENST00000228682	NM_005269.2	541	Cgc/Tgc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864571	57864571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	36	678	0	ENST00000228682.2:c.2048C>A	p.Ser683Tyr	p.S683Y	ENST00000228682	NM_005269.2	683	tCt/tAt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865140	57865140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	33	792	0	ENST00000228682.2:c.2617C>A	p.Leu873Ile	p.L873I	ENST00000228682	NM_005269.2	873	Ctt/Att																																																																														
MDM2	4193	MSKCC	GRCh37	12	69222592	69222592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	50	467	1	ENST00000462284.1:c.565C>T	p.Arg189Cys	p.R189C	ENST00000462284	NM_002392.5	189	Cgc/Tgc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112884148	112884149	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	39	475	0	ENST00000351677.2:c.89dup	p.Leu30PhefsTer5	p.L30Ffs*5	ENST00000351677	NM_002834.3	28	agt/agTt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924348	112924348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	39	552	0	ENST00000351677.2:c.1294C>A	p.Pro432Thr	p.P432T	ENST00000351677	NM_002834.3	432	Cct/Act																																																																														
MSI1	4440	MSKCC	GRCh37	12	120791129	120791129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	56	590	1	ENST00000257552.2:c.706G>A	p.Ala236Thr	p.A236T	ENST00000257552	NM_002442.3	236	Gcc/Acc																																																																														
POLE	5426	MSKCC	GRCh37	12	133202894	133202894	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	31	500	0	ENST00000320574.5:c.6340del	p.Leu2114TrpfsTer9	p.L2114Wfs*9	ENST00000320574	NM_006231.2	2114	Ctg/tg																																																																														
POLE	5426	MSKCC	GRCh37	12	133212559	133212559	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	38	556	2	ENST00000320574.5:c.5730C>A	p.Cys1910Ter	p.C1910*	ENST00000320574	NM_006231.2	1910	tgC/tgA																																																																														
POLE	5426	MSKCC	GRCh37	12	133235963	133235963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	98	595	0	ENST00000320574.5:c.3193G>A	p.Gly1065Arg	p.G1065R	ENST00000320574	NM_006231.2	1065	Gga/Aga																																																																														
POLE	5426	MSKCC	GRCh37	12	133237677	133237677	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	33	679	0	ENST00000320574.5:c.2938C>T	p.Gln980Ter	p.Q980*	ENST00000320574	NM_006231.2	980	Cag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133257866	133257866	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	49	411	0	ENST00000320574.5:c.63-1G>T		p.X21_splice	ENST00000320574	NM_006231.2	21																																																																															
LATS2	26524	MSKCC	GRCh37	13	21549492	21549492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	47	462	0	ENST00000382592.4:c.2784G>A	p.Trp928Ter	p.W928*	ENST00000382592	NM_014572.2	928	tgG/tgA																																																																														
LATS2	26524	MSKCC	GRCh37	13	21553937	21553937	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	24	382	1	ENST00000382592.4:c.2666-1G>T		p.X889_splice	ENST00000382592	NM_014572.2	889																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562886	21562886	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	33	669	0	ENST00000382592.4:c.1033C>T	p.Gln345Ter	p.Q345*	ENST00000382592	NM_014572.2	345	Cag/Tag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563002	21563002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	41	673	0	ENST00000382592.4:c.917C>T	p.Pro306Leu	p.P306L	ENST00000382592	NM_014572.2	306	cCc/cTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611372	28611372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	40	607	1	ENST00000241453.7:c.1259C>T	p.Ala420Val	p.A420V	ENST00000241453	NM_004119.2	420	gCa/gTa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893590	28893590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	47	441	0	ENST00000282397.4:c.3256G>A	p.Gly1086Arg	p.G1086R	ENST00000282397	NM_002019.4	1086	Gga/Aga																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005345	29005345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	97	674	0	ENST00000282397.4:c.916A>G	p.Lys306Glu	p.K306E	ENST00000282397	NM_002019.4	306	Aaa/Gaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008291	29008291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	49	465	0	ENST00000282397.4:c.580A>G	p.Ile194Val	p.I194V	ENST00000282397	NM_002019.4	194	Ata/Gta																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041755	29041755	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	33	403	0	ENST00000282397.4:c.65-1G>T		p.X22_splice	ENST00000282397	NM_002019.4	22																																																																															
BRCA2	675	MSKCC	GRCh37	13	32906858	32906858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	80	507	0	ENST00000380152.3:c.1243C>T	p.His415Tyr	p.H415Y	ENST00000380152		415	Cat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912902	32912902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	37	383	0	ENST00000380152.3:c.4410A>G	p.Ile1470Met	p.I1470M	ENST00000380152		1470	atA/atG																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930564	32930564	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	28	267	1	ENST00000380152.3:c.7436-1G>T		p.X2479_splice	ENST00000380152		2479																																																																															
FOXO1	2308	MSKCC	GRCh37	13	41133674	41133674	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	35	354	0	ENST00000379561.5:c.1954T>C	p.Trp652Arg	p.W652R	ENST00000379561	NM_002015.3	652	Tgg/Cgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48881430	48881430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	63	196	0	ENST00000267163.4:c.152A>G	p.Glu51Gly	p.E51G	ENST00000267163	NM_000321.2	51	gAa/gGa																																																																														
RB1	5925	MSKCC	GRCh37	13	49050919	49050919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	33	390	0	ENST00000267163.4:c.2603C>A	p.Pro868His	p.P868H	ENST00000267163	NM_000321.2	868	cCt/cAt																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281734	49281734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	64	775	0	ENST00000282018.3:c.781C>A	p.Leu261Met	p.L261M	ENST00000282018	NM_020377.2	261	Ctg/Atg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337683	73337684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	29	343	1	ENST00000377767.4:c.2032dupA	p.Ile678AsnfsTer3	p.I678Nfs*3	ENST00000377767	NM_014953.3	678	att/aAtt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103513867	103513867	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	36	318	0	ENST00000355739.4:c.683A>T	p.Asp228Val	p.D228V	ENST00000355739	NM_000123.3	228	gAc/gTc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519075	103519075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	35	567	1	ENST00000355739.4:c.2413G>A	p.Gly805Arg	p.G805R	ENST00000355739	NM_000123.3	805	Gga/Aga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435868	110435868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	18	519	0	ENST00000375856.3:c.2533C>T	p.Pro845Ser	p.P845S	ENST00000375856	NM_003749.2	845	Cca/Tca																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436077	110436077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	30	716	0	ENST00000375856.3:c.2324T>A	p.Val775Asp	p.V775D	ENST00000375856	NM_003749.2	775	gTc/gAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436207	110436207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	24	484	0	ENST00000375856.3:c.2194C>T	p.Pro732Ser	p.P732S	ENST00000375856	NM_003749.2	732	Ccc/Tcc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107707	30107707	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	46	626	0	ENST00000331968.5:c.973A>G	p.Thr325Ala	p.T325A	ENST00000331968	NM_002742.2	325	Acc/Gcc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987211	36987211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	40	593	0	ENST00000354822.5:c.478G>A	p.Gly160Ser	p.G160S	ENST00000354822	NM_001079668.2	160	Ggc/Agc																																																																														
RAD51	5888	MSKCC	GRCh37	15	40993319	40993319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	32	462	0	ENST00000267868.3:c.145G>A	p.Val49Met	p.V49M	ENST00000267868	NM_002875.4	49	Gtg/Atg																																																																														
MGA	23269	MSKCC	GRCh37	15	41989076	41989076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	49	504	0	ENST00000219905.7:c.1868G>A	p.Cys623Tyr	p.C623Y	ENST00000219905	NM_001164273.1	623	tGt/tAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42034852	42034852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	48	532	0	ENST00000219905.7:c.4694C>T	p.Thr1565Ile	p.T1565I	ENST00000219905	NM_001164273.1	1565	aCa/aTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42040877	42040877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	49	554	0	ENST00000219905.7:c.5255C>A	p.Pro1752His	p.P1752H	ENST00000219905	NM_001164273.1	1752	cCt/cAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041692	42041692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	49	515	0	ENST00000219905.7:c.5887G>A	p.Val1963Ile	p.V1963I	ENST00000219905	NM_001164273.1	1963	Gtt/Att																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43720315	43720315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	111	692	0	ENST00000382044.4:c.3727C>A	p.Arg1243Ser	p.R1243S	ENST00000382044	NM_001141980.1	1243	Cgt/Agt																																																																														
IDH2	3418	MSKCC	GRCh37	15	90628267	90628267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	34	755	0	ENST00000330062.3:c.1144C>T	p.Arg382Trp	p.R382W	ENST00000330062	NM_002168.2	382	Cgg/Tgg																																																																														
BLM	641	MSKCC	GRCh37	15	91298098	91298098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	37	365	0	ENST00000355112.3:c.1017A>C	p.Lys339Asn	p.K339N	ENST00000355112	NM_000057.2	339	aaA/aaC																																																																														
BLM	641	MSKCC	GRCh37	15	91326139	91326139	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	37	369	0	ENST00000355112.3:c.2643G>A	p.Trp881Ter	p.W881*	ENST00000355112	NM_000057.2	881	tgG/tgA																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467863	99467863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	28	365	0	ENST00000268035.6:c.2732C>T	p.Ser911Phe	p.S911F	ENST00000268035	NM_000875.3	911	tCt/tTt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500382	99500382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	36	634	0	ENST00000268035.6:c.3815C>A	p.Pro1272His	p.P1272H	ENST00000268035	NM_000875.3	1272	cCt/cAt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500577	99500577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	32	458	0	ENST00000268035.6:c.4010G>T	p.Arg1337Leu	p.R1337L	ENST00000268035	NM_000875.3	1337	cGc/cTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2122868	2122868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	35	570	0	ENST00000219476.3:c.2239C>A	p.Leu747Met	p.L747M	ENST00000219476	NM_000548.3	747	Ctg/Atg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2124319	2124319	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	39	814	0	ENST00000219476.3:c.2474T>A	p.Val825Asp	p.V825D	ENST00000219476	NM_000548.3	825	gTt/gAt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130340	2130340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	53	626	0	ENST00000219476.3:c.3572C>T	p.Thr1191Ile	p.T1191I	ENST00000219476	NM_000548.3	1191	aCc/aTc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2218117	2218117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	46	747	0	ENST00000326181.6:c.179C>A	p.Pro60His	p.P60H	ENST00000326181	NM_032271.2	60	cCc/cAc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225386	2225386	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139483392		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	49	675	0	ENST00000326181.6:c.1471G>A	p.Val491Met	p.V491M	ENST00000326181	NM_032271.2	491	Gtg/Atg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639380	3639380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	38	688	1	ENST00000294008.3:c.4259C>T	p.Pro1420Leu	p.P1420L	ENST00000294008	NM_032444.2	1420	cCa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857296	9857296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	31	559	0	ENST00000330684.3:c.4105C>T	p.His1369Tyr	p.H1369Y	ENST00000330684	NM_001134407.1	1369	Cac/Tac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032171	10032171	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	50	750	0	ENST00000330684.3:c.652C>T	p.Gln218Ter	p.Q218*	ENST00000330684	NM_001134407.1	218	Cag/Tag																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14015887	14015887	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	31	242	0	ENST00000311895.7:c.208-1G>T		p.X70_splice	ENST00000311895	NM_005236.2	70																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14038621	14038621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	32	346	0	ENST00000311895.7:c.1946G>T	p.Arg649Ile	p.R649I	ENST00000311895	NM_005236.2	649	aGa/aTa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641344	23641344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	42	712	0	ENST00000261584.4:c.2131G>A	p.Val711Ile	p.V711I	ENST00000261584	NM_024675.3	711	Gtt/Att																																																																														
CYLD	1540	MSKCC	GRCh37	16	50828297	50828297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	105	523	0	ENST00000398568.2:c.2635G>A	p.Asp879Asn	p.D879N	ENST00000398568	NM_001042412.1	879	Gat/Aat																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	30	374	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655395	67655395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	44	558	0	ENST00000264010.4:c.1258G>A	p.Gly420Ser	p.G420S	ENST00000264010	NM_006565.3	420	Ggt/Agt																																																																														
CDH1	999	MSKCC	GRCh37	16	68835660	68835660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	45	627	0	ENST00000261769.5:c.251C>A	p.Thr84Lys	p.T84K	ENST00000261769	NM_004360.3	84	aCa/aAa																																																																														
CDH1	999	MSKCC	GRCh37	16	68867295	68867295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	100	537	0	ENST00000261769.5:c.2542C>A	p.Leu848Met	p.L848M	ENST00000261769	NM_004360.3	848	Ctg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822557	72822557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	26	511	0	ENST00000268489.5:c.9618G>T	p.Gln3206His	p.Q3206H	ENST00000268489	NM_006885.3	3206	caG/caT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827427	72827428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	47	710	0	ENST00000268489.5:c.9153dup	p.Val3052SerfsTer2	p.V3052Sfs*2	ENST00000268489	NM_006885.3	3051	-/A																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831172	72831172	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	37	559	0	ENST00000268489.5:c.5409del	p.Ser1804ValfsTer10	p.S1804Vfs*10	ENST00000268489	NM_006885.3	1803	ccC/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984430	72984430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	41	678	2	ENST00000268489.5:c.3154C>A	p.Leu1052Met	p.L1052M	ENST00000268489	NM_006885.3	1052	Ctg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991503	72991503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	46	829	0	ENST00000268489.5:c.2542C>A	p.Leu848Met	p.L848M	ENST00000268489	NM_006885.3	848	Ctg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991698	72991698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	38	482	0	ENST00000268489.5:c.2347G>A	p.Ala783Thr	p.A783T	ENST00000268489	NM_006885.3	783	Gca/Aca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992417	72992417	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	53	858	0	ENST00000268489.5:c.1628T>C	p.Leu543Pro	p.L543P	ENST00000268489	NM_006885.3	543	cTg/cCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993872	72993872	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	38	512	0	ENST00000268489.5:c.173A>T	p.Asn58Ile	p.N58I	ENST00000268489	NM_006885.3	58	aAt/aTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81925195	81925195	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	64	483	0	ENST00000359376.3:c.986C>T	p.Thr329Met	p.T329M	ENST00000359376	NM_002661.3	329	aCg/aTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953145	81953145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	48	388	0	ENST00000359376.3:c.2111T>C	p.Leu704Pro	p.L704P	ENST00000359376	NM_002661.3	704	cTg/cCg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81960686	81960686	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	22	410	0	ENST00000359376.3:c.2418-1G>A		p.X806_splice	ENST00000359376	NM_002661.3	806																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81971483	81971483	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	50	424	0	ENST00000359376.3:c.3173A>T	p.Lys1058Met	p.K1058M	ENST00000359376	NM_002661.3	1058	aAg/aTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346777	89346777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	28	395	0	ENST00000301030.4:c.6173C>A	p.Pro2058His	p.P2058H	ENST00000301030	NM_001256183.1	2058	cCt/cAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348038	89348038	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs113527563		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	44	966	0	ENST00000301030.4:c.4912C>G	p.Pro1638Ala	p.P1638A	ENST00000301030	NM_001256183.1	1638	Cct/Gct																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350431	89350431	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149776253		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	54	818	1	ENST00000301030.4:c.2519G>A	p.Arg840Gln	p.R840Q	ENST00000301030	NM_001256183.1	840	cGg/cAg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89815123	89815123	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	81	550	0	ENST00000389301.3:c.3292G>T	p.Glu1098Ter	p.E1098*	ENST00000389301	NM_000135.2	1098	Gaa/Taa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89831311	89831311	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	50	542	0	ENST00000389301.3:c.2765A>G	p.Glu922Gly	p.E922G	ENST00000389301	NM_000135.2	922	gAg/gGg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838103	89838103	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	85	574	0	ENST00000389301.3:c.2134G>T	p.Glu712Ter	p.E712*	ENST00000389301	NM_000135.2	712	Gag/Tag																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217667	7217667	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	43	552	1	ENST00000380728.2:c.260del	p.Phe87SerfsTer22	p.F87Sfs*22	ENST00000380728		87	tTc/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	79	512	0	ENST00000269305.4:c.800G>A	p.Arg267Gln	p.R267Q	ENST00000269305	NM_001126112.2	267	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	27	444	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	36	532	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
ALOX12B	242	MSKCC	GRCh37	17	7984293	7984293	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	29	556	1	ENST00000319144.4:c.436T>C	p.Trp146Arg	p.W146R	ENST00000319144	NM_001139.2	146	Tgg/Cgg																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108250	8108250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	107	568	0	ENST00000585124.1:c.974C>T	p.Pro325Leu	p.P325L	ENST00000585124	NM_004217.3	325	cCt/cTt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15960997	15960997	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	90	440	1	ENST00000268712.3:c.6223C>T	p.Gln2075Ter	p.Q2075*	ENST00000268712	NM_006311.3	2075	Cag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973493	15973493	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	81	368	0	ENST00000268712.3:c.4499A>G	p.Asn1500Ser	p.N1500S	ENST00000268712	NM_006311.3	1500	aAc/aGc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973623	15973624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	45	468	1	ENST00000268712.3:c.4368_4369insA	p.Ser1457IlefsTer4	p.S1457Ifs*4	ENST00000268712	NM_006311.3	1456	-/A																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	98	541	2	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	53	445	9	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
NF1	4763	MSKCC	GRCh37	17	29556280	29556280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	49	587	0	ENST00000358273.4:c.2647T>C	p.Ser883Pro	p.S883P	ENST00000358273	NM_001042492.2	883	Tca/Cca																																																																														
NF1	4763	MSKCC	GRCh37	17	29663652	29663652	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	32	435	0	ENST00000358273.4:c.6148-1G>T		p.X2050_splice	ENST00000358273	NM_001042492.2	2050																																																																															
CDK12	51755	MSKCC	GRCh37	17	37618483	37618483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	43	480	0	ENST00000447079.4:c.159G>A	p.Met53Ile	p.M53I	ENST00000447079	NM_015083.1	53	atG/atA																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619260	37619260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	29	395	0	ENST00000447079.4:c.936C>A	p.Ser312Arg	p.S312R	ENST00000447079	NM_015083.1	312	agC/agA																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627730	37627730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	53	730	0	ENST00000447079.4:c.1645C>T	p.Pro549Ser	p.P549S	ENST00000447079	NM_015083.1	549	Ccc/Tcc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650924	37650924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	42	469	0	ENST00000447079.4:c.2396C>T	p.Ala799Val	p.A799V	ENST00000447079	NM_015083.1	799	gCa/gTa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37856539	37856540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	32	354	0	ENST00000269571.5:c.54dup	p.Gly19ArgfsTer91	p.G19Rfs*91	ENST00000269571		16	-/C																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40359576	40359576	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	87	500	0	ENST00000293328.3:c.2077G>A	p.Ala693Thr	p.A693T	ENST00000293328	NM_012448.3	693	Gct/Act																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40443988	40443988	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	59	508	0	ENST00000345506.4:c.286-2A>G		p.X96_splice	ENST00000345506	NM_003152.3	96																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243487	41243487	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	55	658	0	ENST00000357654.3:c.4061A>T	p.Asn1354Ile	p.N1354I	ENST00000357654	NM_007294.3	1354	aAt/aTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243932	41243932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	101	649	1	ENST00000357654.3:c.3616G>A	p.Ala1206Thr	p.A1206T	ENST00000357654	NM_007294.3	1206	Gcc/Acc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244818	41244818	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	105	782	0	ENST00000357654.3:c.2730del	p.Gly911GlufsTer89	p.G911Efs*89	ENST00000357654	NM_007294.3	910	caA/ca																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245087	41245087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	52	826	0	ENST00000357654.3:c.2461G>T	p.Asp821Tyr	p.D821Y	ENST00000357654	NM_007294.3	821	Gat/Tat																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246282	41246282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	47	609	0	ENST00000357654.3:c.1266T>A	p.Tyr422Ter	p.Y422*	ENST00000357654	NM_007294.3	422	taT/taA																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	56	621	0	ENST00000407977.2:c.349C>T	p.Arg117Cys	p.R117C	ENST00000407977		117	Cgc/Tgc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740629	58740629	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	39	579	0	ENST00000305921.3:c.1534A>C	p.Asn512His	p.N512H	ENST00000305921	NM_003620.3	512	Aat/Cat																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760660	59760660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	57	524	0	ENST00000259008.2:c.3747G>T	p.Lys1249Asn	p.K1249N	ENST00000259008	NM_032043.2	1249	aaG/aaT																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59926535	59926535	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	35	651	0	ENST00000259008.2:c.462del	p.Gln155LysfsTer2	p.Q155Kfs*2	ENST00000259008	NM_032043.2	154	ttT/tt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59934491	59934491	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	50	542	0	ENST00000259008.2:c.307G>T	p.Gly103Ter	p.G103*	ENST00000259008	NM_032043.2	103	Gga/Tga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63530029	63530029	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	59	443	0	ENST00000307078.5:c.2405+1G>A		p.X802_splice	ENST00000307078	NM_004655.3	802																																																																															
PRKAR1A	5573	MSKCC	GRCh37	17	66522016	66522016	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	35	271	0	ENST00000358598.2:c.671G>A	p.Trp224Ter	p.W224*	ENST00000358598	NM_212471.2	224	tGg/tAg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796094	78796094	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	30	435	1	ENST00000306801.3:c.988del	p.Arg330GlyfsTer28	p.R330Gfs*28	ENST00000306801	NM_020761.2	328	ctC/ct																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78899281	78899281	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	42	486	1	ENST00000306801.3:c.2919+1G>A		p.X973_splice	ENST00000306801	NM_020761.2	973																																																																															
YES1	7525	MSKCC	GRCh37	18	743290	743290	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	41	605	0	ENST00000314574.4:c.850G>T	p.Gly284Ter	p.G284*	ENST00000314574	NM_005433.3	284	Gga/Tga																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39620668	39620668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	92	473	0	ENST00000262039.4:c.2066C>A	p.Pro689His	p.P689H	ENST00000262039	NM_002647.2	689	cCt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584806	48584806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	34	418	0	ENST00000342988.3:c.884C>T	p.Pro295Leu	p.P295L	ENST00000342988	NM_005359.5	295	cCg/cTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	43	541	0	ENST00000342988.3:c.1067C>A	p.Pro356His	p.P356H	ENST00000342988	NM_005359.5	356	cCt/cAt																																																																														
BCL2	596	MSKCC	GRCh37	18	60985722	60985722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	18	193	1	ENST00000333681.4:c.178G>A	p.Ala60Thr	p.A60T	ENST00000333681		60	Gcc/Acc																																																																														
STK11	6794	MSKCC	GRCh37	19	1226606	1226606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	53	448	0	ENST00000326873.7:c.1262G>A	p.Ser421Asn	p.S421N	ENST00000326873	NM_000455.4	421	aGc/aAc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2194560	2194560	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	71	429	0	ENST00000398665.3:c.635A>C	p.Lys212Thr	p.K212T	ENST00000398665	NM_032482.2	212	aAg/aCg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211173	2211173	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	32	735	0	ENST00000398665.3:c.1427T>C	p.Leu476Pro	p.L476P	ENST00000398665	NM_032482.2	476	cTg/cCg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222254	2222254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	46	726	0	ENST00000398665.3:c.3086C>A	p.Pro1029His	p.P1029H	ENST00000398665	NM_032482.2	1029	cCc/cAc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223375	2223376	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	40	598	0	ENST00000398665.3:c.3492dup	p.Val1165ArgfsTer28	p.V1165Rfs*28	ENST00000398665	NM_032482.2	1162	-/C																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110315	3110315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	67	531	0	ENST00000078429.4:c.305A>G	p.Lys102Arg	p.K102R	ENST00000078429	NM_002067.2	102	aAg/aGg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3121089	3121089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	38	672	1	ENST00000078429.4:c.992C>T	p.Ala331Val	p.A331V	ENST00000078429	NM_002067.2	331	gCc/gTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7267754	7267754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	61	612	0	ENST00000302850.5:c.254C>A	p.Thr85Asn	p.T85N	ENST00000302850	NM_000208.2	85	aCt/aAt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248552	10248552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	34	671	1	ENST00000340748.4:c.4201C>T	p.Arg1401Trp	p.R1401W	ENST00000340748		1401	Cgg/Tgg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265406	10265406	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	48	643	0	ENST00000340748.4:c.1640A>T	p.Glu547Val	p.E547V	ENST00000340748		547	gAg/gTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10305521	10305521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	17	496	0	ENST00000340748.4:c.55T>C	p.Ser19Pro	p.S19P	ENST00000340748		19	Tcg/Ccg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610243	10610243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	64	719	0	ENST00000171111.5:c.467T>C	p.Met156Thr	p.M156T	ENST00000171111	NM_203500.1	156	aTg/aCg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11018721	11018721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	51	625	0	ENST00000327064.4:c.353G>A	p.Cys118Tyr	p.C118Y	ENST00000327064	NM_199141.1	118	tGt/tAt																																																																														
CARM1	10498	MSKCC	GRCh37	19	11031222	11031222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	40	663	0	ENST00000327064.4:c.1307G>A	p.Gly436Glu	p.G436E	ENST00000327064	NM_199141.1	436	gGg/gAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11113714	11113714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	38	498	0	ENST00000344626.4:c.1822G>A	p.Glu608Lys	p.E608K	ENST00000344626	NM_003072.3	608	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11168942	11168942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	49	420	0	ENST00000344626.4:c.4436G>A	p.Arg1479His	p.R1479H	ENST00000344626	NM_003072.3	1479	cGt/cAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170480	11170480	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	35	622	0	ENST00000344626.4:c.4690del	p.Ile1564SerfsTer32	p.I1564Sfs*32	ENST00000344626	NM_003072.3	1563	Aaa/aa																																																																														
CALR	811	MSKCC	GRCh37	19	13050961	13050961	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	44	478	2	ENST00000316448.5:c.492G>T	p.Lys164Asn	p.K164N	ENST00000316448	NM_004343.3	164	aaG/aaT																																																																														
CALR	811	MSKCC	GRCh37	19	13054352	13054352	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	62	483	0	ENST00000316448.5:c.962T>C	p.Val321Ala	p.V321A	ENST00000316448	NM_004343.3	321	gTc/gCc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376268	15376268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	32	581	0	ENST00000263377.2:c.746C>T	p.Thr249Met	p.T249M	ENST00000263377	NM_058243.2	249	aCg/aTg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17389660	17389660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	65	511	0	ENST00000359435.4:c.793T>G	p.Phe265Val	p.F265V	ENST00000359435	NM_001033549.1	265	Ttt/Gtt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17951077	17951077	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	25	570	0	ENST00000458235.1:c.1216C>T	p.Gln406Ter	p.Q406*	ENST00000458235	NM_000215.3	406	Cag/Tag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273092	18273092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	40	564	0	ENST00000222254.8:c.982G>A	p.Ala328Thr	p.A328T	ENST00000222254	NM_005027.3	328	Gct/Act																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279284	18279284	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	28	415	0	ENST00000222254.8:c.1737-1G>T		p.X579_splice	ENST00000222254	NM_005027.3	579																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212521	36212521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	32	792	0	ENST00000222270.7:c.2272C>T	p.Pro758Ser	p.P758S	ENST00000222270	NM_014727.1	758	Cca/Tca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212537	36212537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	37	805	0	ENST00000222270.7:c.2288C>A	p.Pro763Gln	p.P763Q	ENST00000222270	NM_014727.1	763	cCg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213573	36213573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	98	865	0	ENST00000222270.7:c.2675G>A	p.Arg892His	p.R892H	ENST00000222270	NM_014727.1	892	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222811	36222811	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	36	648	0	ENST00000222270.7:c.5444del	p.Pro1815GlnfsTer80	p.P1815Qfs*80	ENST00000222270	NM_014727.1	1814	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223962	36223962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	36	791	1	ENST00000222270.7:c.6512G>T	p.Gly2171Val	p.G2171V	ENST00000222270	NM_014727.1	2171	gGg/gTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224039	36224039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	46	809	0	ENST00000222270.7:c.6589C>A	p.Leu2197Met	p.L2197M	ENST00000222270	NM_014727.1	2197	Ctg/Atg																																																																														
AKT2	208	MSKCC	GRCh37	19	40748585	40748585	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	33	541	0	ENST00000392038.2:c.297G>A	p.Trp99Ter	p.W99*	ENST00000392038	NM_001626.4	99	tgG/tgA																																																																														
AXL	558	MSKCC	GRCh37	19	41736887	41736887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	34	642	0	ENST00000301178.4:c.602C>T	p.Ser201Phe	p.S201F	ENST00000301178	NM_021913.4	201	tCc/tTc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383075	42383075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	52	363	2	ENST00000221972.3:c.95C>T	p.Ala32Val	p.A32V	ENST00000221972	NM_021601.3	32	gCc/gTc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383153	42383153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	42	633	0	ENST00000221972.3:c.173G>T	p.Ser58Ile	p.S58I	ENST00000221972	NM_021601.3	58	aGc/aTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42795269	42795269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	51	638	0	ENST00000575354.2:c.2349G>T	p.Gln783His	p.Q783H	ENST00000575354	NM_015125.3	783	caG/caT																																																																														
CIC	23152	MSKCC	GRCh37	19	42795886	42795886	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	97	749	0	ENST00000575354.2:c.2880del	p.Ser961AlafsTer6	p.S961Afs*6	ENST00000575354	NM_015125.3	959	Ccc/cc																																																																														
CIC	23152	MSKCC	GRCh37	19	42798348	42798348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	37	647	0	ENST00000575354.2:c.4219C>T	p.Pro1407Ser	p.P1407S	ENST00000575354	NM_015125.3	1407	Ccc/Tcc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45858035	45858035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	97	656	0	ENST00000391945.4:c.1618A>G	p.Thr540Ala	p.T540A	ENST00000391945	NM_000400.3	540	Acc/Gcc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867068	45867068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	30	569	1	ENST00000391945.4:c.1051C>T	p.Gln351Ter	p.Q351*	ENST00000391945	NM_000400.3	351	Cag/Tag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902244	50902244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	58	743	0	ENST00000440232.2:c.136G>A	p.Ala46Thr	p.A46T	ENST00000440232	NM_002691.3	46	Gca/Aca																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	30	527	0	ENST00000440232.2:c.337G>A	p.Gly113Arg	p.G113R	ENST00000440232	NM_002691.3	113	Ggg/Agg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909713	50909713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	83	788	0	ENST00000440232.2:c.1433G>A	p.Ser478Asn	p.S478N	ENST00000440232	NM_002691.3	478	aGc/aAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52709251	52709252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	42	486	0	ENST00000322088.6:c.205_206insA	p.Leu69HisfsTer55	p.L69Hfs*55	ENST00000322088	NM_014225.5	69	ctg/cAtg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52709254	52709254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	36	475	2	ENST00000322088.6:c.208G>T	p.Ala70Ser	p.A70S	ENST00000322088	NM_014225.5	70	Gca/Tca																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464544	25464544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	37	648	0	ENST00000264709.3:c.1969G>A	p.Val657Met	p.V657M	ENST00000264709	NM_175629.2	657	Gtg/Atg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467446	25467446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	39	624	0	ENST00000264709.3:c.1630C>T	p.Arg544Cys	p.R544C	ENST00000264709	NM_175629.2	544	Cgt/Tgt																																																																														
ALK	238	MSKCC	GRCh37	2	29451823	29451823	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	61	595	1	ENST00000389048.3:c.2742del	p.Trp915GlyfsTer24	p.W915Gfs*24	ENST00000389048	NM_004304.4	914	ggG/gg																																																																														
ALK	238	MSKCC	GRCh37	2	29541264	29541264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	48	359	0	ENST00000389048.3:c.1553C>T	p.Ala518Val	p.A518V	ENST00000389048	NM_004304.4	518	gCt/gTt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46602874	46602874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	53	662	0	ENST00000263734.3:c.932C>T	p.Ala311Val	p.A311V	ENST00000263734	NM_001430.4	311	gCa/gTa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026708	48026708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	51	421	0	ENST00000234420.5:c.1586G>A	p.Gly529Asp	p.G529D	ENST00000234420	NM_000179.2	529	gGt/gAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	100	508	12	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
REL	5966	MSKCC	GRCh37	2	61145714	61145714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	40	380	0	ENST00000295025.8:c.826G>A	p.Asp276Asn	p.D276N	ENST00000295025	NM_002908.2	276	Gat/Aat																																																																														
XPO1	7514	MSKCC	GRCh37	2	61711149	61711149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	46	471	0	ENST00000401558.2:c.2600C>A	p.Pro867Gln	p.P867Q	ENST00000401558	NM_003400.3	867	cCa/cAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61722619	61722619	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	70	371	0	ENST00000401558.2:c.1018del	p.Arg340AspfsTer2	p.R340Dfs*2	ENST00000401558	NM_003400.3	340	Aga/ga																																																																														
XPO1	7514	MSKCC	GRCh37	2	61760939	61760939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	53	537	0	ENST00000401558.2:c.94G>A	p.Val32Met	p.V32M	ENST00000401558	NM_003400.3	32	Gtg/Atg																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96919560	96919560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	41	519	0	ENST00000258439.3:c.703G>A	p.Ala235Thr	p.A235T	ENST00000258439	NM_001193304.2	235	Gct/Act																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881498	111881498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	38	510	0	ENST00000393256.3:c.176G>A	p.Ser59Asn	p.S59N	ENST00000393256	NM_006538.4	59	aGc/aAc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158617532	158617532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	60	467	0	ENST00000263640.3:c.1124G>A	p.Arg375His	p.R375H	ENST00000263640	NM_001105.4	375	cGt/cAt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095797	178095797	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	53	588	0	ENST00000397062.3:c.1534C>T	p.Gln512Ter	p.Q512*	ENST00000397062	NM_006164.4	512	Cag/Tag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096543	178096543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	28	404	0	ENST00000397062.3:c.788C>T	p.Pro263Leu	p.P263L	ENST00000397062	NM_006164.4	263	cCc/cTc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190670376	190670376	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	42	366	0	ENST00000441310.2:c.316-2A>G		p.X106_splice	ENST00000441310	NM_000534.4	106																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198263207	198263207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	58	475	0	ENST00000335508.6:c.3112C>A	p.Leu1038Ile	p.L1038I	ENST00000335508	NM_012433.2	1038	Ctt/Att																																																																														
CASP8	841	MSKCC	GRCh37	2	202123034	202123034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	39	424	0	ENST00000358485.4:c.80C>A	p.Pro27His	p.P27H	ENST00000358485	NM_001080125.1	27	cCt/cAt																																																																														
CASP8	841	MSKCC	GRCh37	2	202141587	202141587	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	43	360	0	ENST00000358485.4:c.878delG	p.Gly293AspfsTer4	p.G293Dfs*4	ENST00000358485	NM_001080125.1	292	cGg/cg																																																																														
CASP8	841	MSKCC	GRCh37	2	202151300	202151300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	35	481	0	ENST00000358485.4:c.1600G>A	p.Val534Ile	p.V534I	ENST00000358485	NM_001080125.1	534	Gtc/Atc																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735477	204735477	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	47	492	0	ENST00000302823.3:c.278A>T	p.Asn93Ile	p.N93I	ENST00000302823	NM_005214.4	93	aAt/aTt																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736204	204736205	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	41	411	0	ENST00000302823.3:c.565dup	p.Met189AsnfsTer24	p.M189Nfs*24	ENST00000302823	NM_005214.4	187	-/A																																																																														
IDH1	3417	MSKCC	GRCh37	2	209101872	209101872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	47	463	0	ENST00000345146.2:c.1176G>T	p.Leu392Phe	p.L392F	ENST00000345146	NM_005896.2	392	ttG/ttT																																																																														
IDH1	3417	MSKCC	GRCh37	2	209104728	209104728	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	44	264	0	ENST00000345146.2:c.851-1G>T		p.X284_splice	ENST00000345146	NM_005896.2	284																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212576881	212576881	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	38	459	0	ENST00000342788.4:c.1018G>T	p.Gly340Ter	p.G340*	ENST00000342788	NM_005235.2	340	Gga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578331	212578331	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	40	447	0	ENST00000342788.4:c.926C>A	p.Pro309His	p.P309H	ENST00000342788	NM_005235.2	309	cCt/cAt																																																																														
BARD1	580	MSKCC	GRCh37	2	215645448	215645448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	95	709	0	ENST00000260947.4:c.1150T>A	p.Ser384Thr	p.S384T	ENST00000260947	NM_000465.2	384	Tcc/Acc																																																																														
BARD1	580	MSKCC	GRCh37	2	215645751	215645751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	46	637	0	ENST00000260947.4:c.847G>A	p.Ala283Thr	p.A283T	ENST00000260947	NM_000465.2	283	Gct/Act																																																																														
BARD1	580	MSKCC	GRCh37	2	215646084	215646085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs746325928		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	58	678	1	ENST00000260947.4:c.513dup	p.Asp172ArgfsTer10	p.D172Rfs*10	ENST00000260947	NM_000465.2	171	-/A																																																																														
INHA	3623	MSKCC	GRCh37	2	220439938	220439938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	44	808	0	ENST00000243786.2:c.791G>T	p.Arg264Ile	p.R264I	ENST00000243786	NM_002191.3	264	aGa/aTa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	58	542	0	ENST00000305123.5:c.1103C>T	p.Pro368Leu	p.P368L	ENST00000305123	NM_005544.2	368	cCg/cTg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663068	227663070	+	frameshift_variant	Frame_Shift_Del	DEL	CGC	CGC	AG			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	41	557	3	ENST00000305123.5:c.385_387delinsCT	p.Ala129LeufsTer21	p.A129Lfs*21	ENST00000305123	NM_005544.2	129	GCG/CT																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663070	227663070	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	41	547	0	ENST00000305123.5:c.385del	p.Ala129ArgfsTer21	p.A129Rfs*21	ENST00000305123	NM_005544.2	129	Gcg/cg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546967	9546968	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	35	395	0	ENST00000353224.5:c.1054dup	p.Arg352LysfsTer79	p.R352Kfs*79	ENST00000353224	NM_177990.2	352	agg/aAgg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561455	9561455	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	119	554	0	ENST00000353224.5:c.327T>A	p.Asp109Glu	p.D109E	ENST00000353224	NM_177990.2	109	gaT/gaA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624973	9624973	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	19	255	0	ENST00000353224.5:c.4T>A	p.Phe2Ile	p.F2I	ENST00000353224	NM_177990.2	2	Ttt/Att																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31016162	31016162	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	45	547	0	ENST00000375687.4:c.408T>A	p.Cys136Ter	p.C136*	ENST00000375687	NM_015338.5	136	tgT/tgA																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023835	31023835	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	36	645	0	ENST00000375687.4:c.3320T>A	p.Leu1107His	p.L1107H	ENST00000375687	NM_015338.5	1107	cTt/cAt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024805	31024805	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	34	657	0	ENST00000375687.4:c.4293del	p.Ser1432ProfsTer18	p.S1432Pfs*18	ENST00000375687	NM_015338.5	1430	ctC/ct																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31388713	31388713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	43	595	0	ENST00000328111.2:c.1978G>A	p.Ala660Thr	p.A660T	ENST00000328111	NM_006892.3	660	Gcc/Acc																																																																														
SRC	6714	MSKCC	GRCh37	20	36030004	36030004	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	44	599	0	ENST00000358208.4:c.1040-1G>T		p.X347_splice	ENST00000358208		347																																																																															
SRC	6714	MSKCC	GRCh37	20	36030982	36030982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	42	585	0	ENST00000358208.4:c.1261G>A	p.Ala421Thr	p.A421T	ENST00000358208		421	Gcg/Acg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39725870	39725870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	82	375	1	ENST00000361337.2:c.741G>A	p.Met247Ile	p.M247I	ENST00000361337	NM_003286.2	247	atG/atA																																																																														
TOP1	7150	MSKCC	GRCh37	20	39741444	39741444	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	37	321	0	ENST00000361337.2:c.1331A>T	p.Tyr444Phe	p.Y444F	ENST00000361337	NM_003286.2	444	tAc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713373	40713373	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	69	626	0	ENST00000373198.4:c.4142A>T	p.Lys1381Met	p.K1381M	ENST00000373198	NM_133170.3	1381	aAg/aTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	26	447	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419846	41419846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	41	358	0	ENST00000373198.4:c.475C>T	p.His159Tyr	p.H159Y	ENST00000373198	NM_133170.3	159	Cat/Tat																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264965	46264965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	36	454	0	ENST00000371998.3:c.1835C>A	p.Pro612His	p.P612H	ENST00000371998		612	cCt/cAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485416	57485416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	36	367	0	ENST00000371085.3:c.998G>A	p.Arg333His	p.R333H	ENST00000371085	NM_000516.4	333	cGc/cAc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62320462	62320462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	38	539	0	ENST00000508582.2:c.1927T>C	p.Phe643Leu	p.F643L	ENST00000508582		643	Ttc/Ctc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62322170	62322170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	64	576	2	ENST00000508582.2:c.2498C>T	p.Ala833Val	p.A833V	ENST00000508582		833	gCc/gTc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62324205	62324205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	52	710	1	ENST00000508582.2:c.2772G>A	p.Met924Ile	p.M924I	ENST00000508582		924	atG/atA																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231876	36231877	+	splice_acceptor_variant	Splice_Site	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	32	421	0	ENST00000300305.3:c.509-2_509-1insT		p.X170_splice	ENST00000300305		170																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44527577	44527577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	32	439	0	ENST00000291552.4:c.28G>T	p.Gly10Cys	p.G10C	ENST00000291552	NM_006758.2	10	Ggc/Tgc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091749	29091749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	15	279	0	ENST00000328354.6:c.1208G>T	p.Gly403Val	p.G403V	ENST00000328354	NM_007194.3	403	gGg/gTg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29106022	29106022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	45	444	0	ENST00000328354.6:c.818A>G	p.Glu273Gly	p.E273G	ENST00000328354	NM_007194.3	273	gAa/gGa																																																																														
NF2	4771	MSKCC	GRCh37	22	30061043	30061043	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	41	436	0	ENST00000338641.4:c.875T>C	p.Val292Ala	p.V292A	ENST00000338641	NM_000268.3	292	gTt/gCt																																																																														
RAC2	5880	MSKCC	GRCh37	22	37628018	37628018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	34	541	0	ENST00000249071.6:c.242G>A	p.Cys81Tyr	p.C81Y	ENST00000249071	NM_002872.4	81	tGc/tAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574140	41574140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	45	486	1	ENST00000263253.7:c.6425G>T	p.Arg2142Met	p.R2142M	ENST00000263253	NM_001429.3	2142	aGg/aTg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12393125	12393125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	54	625	0	ENST00000287820.6:c.34C>A	p.Pro12Thr	p.P12T	ENST00000287820	NM_015869.4	12	Cca/Aca																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458316	12458316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	63	652	0	ENST00000287820.6:c.933G>T	p.Gln311His	p.Q311H	ENST00000287820	NM_015869.4	311	caG/caT																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626351	12626352	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	38	598	0	ENST00000251849.4:c.1797dup	p.Pro600SerfsTer8	p.P600Sfs*8	ENST00000251849	NM_002880.3	599	-/T																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691842	30691842	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	46	419	0	ENST00000359013.4:c.419A>T	p.Asp140Val	p.D140V	ENST00000359013	NM_001024847.2	140	gAt/gTt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	147	413	23	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732924	30732924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	34	298	0	ENST00000359013.4:c.1612G>A	p.Val538Met	p.V538M	ENST00000359013	NM_001024847.2	538	Gtg/Atg																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182023	38182023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	57	597	0	ENST00000396334.3:c.647G>A	p.Cys216Tyr	p.C216Y	ENST00000396334	NM_002468.4	216	tGt/tAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103819	47103819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	48	491	0	ENST00000409792.3:c.6127G>A	p.Asp2043Asn	p.D2043N	ENST00000409792	NM_014159.6	2043	Gat/Aat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162680	47162680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	50	532	0	ENST00000409792.3:c.3446G>A	p.Ser1149Asn	p.S1149N	ENST00000409792	NM_014159.6	1149	aGt/aAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163377	47163377	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	85	468	0	ENST00000409792.3:c.2749del	p.Ser917ValfsTer5	p.S917Vfs*5	ENST00000409792	NM_014159.6	917	Agt/gt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164475	47164475	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	93	408	0	ENST00000409792.3:c.1651A>G	p.Ser551Gly	p.S551G	ENST00000409792	NM_014159.6	551	Agt/Ggt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165492	47165492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	39	581	0	ENST00000409792.3:c.634G>A	p.Val212Met	p.V212M	ENST00000409792	NM_014159.6	212	Gtg/Atg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165581	47165581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	44	686	0	ENST00000409792.3:c.545C>A	p.Thr182Asn	p.T182N	ENST00000409792	NM_014159.6	182	aCt/aAt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933177	49933177	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	33	545	0	ENST00000296474.3:c.2933T>C	p.Phe978Ser	p.F978S	ENST00000296474	NM_002447.2	978	tTc/tCc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52598140	52598140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	53	615	0	ENST00000394830.3:c.3726G>T	p.Gln1242His	p.Q1242H	ENST00000394830	NM_018313.4	1242	caG/caT																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	37	574	0	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643375	52643375	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	74	489	0	ENST00000394830.3:c.2521C>T	p.Gln841Ter	p.Q841*	ENST00000394830	NM_018313.4	841	Caa/Taa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71102824	71102824	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	44	383	0	ENST00000318789.4:c.383T>C	p.Val128Ala	p.V128A	ENST00000318789	NM_032682.5	128	gTt/gCt																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427651	72427651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	57	440	0	ENST00000477973.2:c.837C>T	p.Ala280Val	p.A280V	ENST00000477973	NM_012234.5	280	gCa/gTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259614	89259614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	96	362	0	ENST00000336596.2:c.758C>T	p.Pro253Leu	p.P253L	ENST00000336596	NM_005233.5	253	cCc/cTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480484	89480484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	29	331	0	ENST00000336596.2:c.2321A>G	p.Asp774Gly	p.D774G	ENST00000336596	NM_005233.5	774	gAc/gGc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119721060	119721060	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	58	511	0	ENST00000316626.5:c.115A>T	p.Thr39Ser	p.T39S	ENST00000316626		39	Aca/Tca																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880965	134880965	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	61	527	0	ENST00000398015.3:c.1528A>G	p.Thr510Ala	p.T510A	ENST00000398015	NM_004441.4	510	Act/Gct																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138431131	138431131	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	35	410	0	ENST00000289153.2:c.1318T>C	p.Trp440Arg	p.W440R	ENST00000289153	NM_006219.2	440	Tgg/Cgg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433399	138433399	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	51	665	0	ENST00000289153.2:c.1213del	p.Tyr405MetfsTer7	p.Y405Mfs*7	ENST00000289153	NM_006219.2	405	Tat/at																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665183	138665183	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	26	678	0	ENST00000330315.3:c.382T>A	p.Trp128Arg	p.W128R	ENST00000330315	NM_023067.3	128	Tgg/Agg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665462	138665462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	28	541	0	ENST00000330315.3:c.103G>T	p.Gly35Cys	p.G35C	ENST00000330315	NM_023067.3	35	Ggc/Tgc																																																																														
ATR	545	MSKCC	GRCh37	3	142168281	142168281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	50	426	0	ENST00000350721.4:c.7925C>T	p.Pro2642Leu	p.P2642L	ENST00000350721	NM_001184.3	2642	cCa/cTa																																																																														
ATR	545	MSKCC	GRCh37	3	142217584	142217584	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	34	516	0	ENST00000350721.4:c.5413G>T	p.Gly1805Ter	p.G1805*	ENST00000350721	NM_001184.3	1805	Gga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142224079	142224079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	36	592	0	ENST00000350721.4:c.5098C>T	p.Pro1700Ser	p.P1700S	ENST00000350721	NM_001184.3	1700	Cca/Tca																																																																														
ATR	545	MSKCC	GRCh37	3	142257439	142257439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	39	380	0	ENST00000350721.4:c.3610G>T	p.Asp1204Tyr	p.D1204Y	ENST00000350721	NM_001184.3	1204	Gat/Tat																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149290773	149290774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	43	464	0	ENST00000360632.3:c.445dup	p.Ile149AsnfsTer8	p.I149Nfs*8	ENST00000360632	NM_015472.4	149	atc/aAtc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	41	633	6	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170002304	170002304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	16	170	0	ENST00000295797.4:c.1123A>G	p.Ile375Val	p.I375V	ENST00000295797	NM_002740.5	375	Att/Gtt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928101	178928101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	84	528	0	ENST00000263967.3:c.1379G>A	p.Gly460Asp	p.G460D	ENST00000263967	NM_006218.2	460	gGt/gAt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430452	181430452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	26	635	1	ENST00000325404.1:c.304A>G	p.Met102Val	p.M102V	ENST00000325404	NM_003106.3	102	Atg/Gtg																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502362	186502362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	91	400	0	ENST00000323963.5:c.85A>G	p.Asn29Asp	p.N29D	ENST00000323963		29	Aat/Gat																																																																														
BCL6	604	MSKCC	GRCh37	3	187444640	187444640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	54	506	0	ENST00000232014.4:c.1587G>T	p.Glu529Asp	p.E529D	ENST00000232014	NM_001130845.1	529	gaG/gaT																																																																														
BCL6	604	MSKCC	GRCh37	3	187447385	187447385	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	47	680	0	ENST00000232014.4:c.808C>T	p.Arg270Ter	p.R270*	ENST00000232014	NM_001130845.1	270	Cga/Tga																																																																														
BCL6	604	MSKCC	GRCh37	3	187447552	187447552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	88	515	0	ENST00000232014.4:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000232014	NM_001130845.1	214	cGg/cAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189590742	189590742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	91	539	0	ENST00000264731.3:c.1307G>A	p.Arg436Lys	p.R436K	ENST00000264731	NM_003722.4	436	aGg/aAg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808856	1808856	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	42	685	0	ENST00000260795.2:c.2288T>C	p.Leu763Pro	p.L763P	ENST00000260795		763	cTg/cCg																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1918709	1918709	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	34	342	0	ENST00000382891.5:c.876del	p.Lys292AsnfsTer20	p.K292Nfs*20	ENST00000382891	NM_133335.3	291	gAa/ga																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1941480	1941480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	37	443	0	ENST00000382891.5:c.1856C>A	p.Pro619His	p.P619H	ENST00000382891	NM_133335.3	619	cCt/cAt																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1957915	1957915	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	50	339	0	ENST00000382891.5:c.2881G>A	p.Ala961Thr	p.A961T	ENST00000382891	NM_133335.3	961	Gca/Aca																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1976686	1976686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	56	628	0	ENST00000382891.5:c.3469G>A	p.Gly1157Arg	p.G1157R	ENST00000382891	NM_133335.3	1157	Ggg/Agg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141132	55141132	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	98	392	0	ENST00000257290.5:c.1778T>C	p.Leu593Pro	p.L593P	ENST00000257290	NM_006206.4	593	cTa/cCa																																																																														
KIT	3815	MSKCC	GRCh37	4	55594228	55594228	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	69	525	1	ENST00000288135.5:c.1931T>C	p.Leu644Pro	p.L644P	ENST00000288135	NM_000222.2	644	cTg/cCg																																																																														
KIT	3815	MSKCC	GRCh37	4	55594289	55594289	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	47	508	0	ENST00000288135.5:c.1990+2T>C		p.X664_splice	ENST00000288135	NM_000222.2	664																																																																															
KDR	3791	MSKCC	GRCh37	4	55964423	55964423	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	32	483	0	ENST00000263923.4:c.2390T>C	p.Leu797Pro	p.L797P	ENST00000263923	NM_002253.2	797	cTg/cCg																																																																														
TET2	54790	MSKCC	GRCh37	4	106157335	106157336	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	34	391	0	ENST00000380013.4:c.2241dup	p.Leu748IlefsTer6	p.L748Ifs*6	ENST00000380013	NM_001127208.2	746	caa/cAaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106190830	106190830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	44	526	0	ENST00000380013.4:c.4108G>T	p.Gly1370Trp	p.G1370W	ENST00000380013	NM_001127208.2	1370	Ggg/Tgg																																																																														
TET2	54790	MSKCC	GRCh37	4	106197493	106197493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	30	320	0	ENST00000380013.4:c.5826G>T	p.Gln1942His	p.Q1942H	ENST00000380013	NM_001127208.2	1942	caG/caT																																																																														
TET2	54790	MSKCC	GRCh37	4	106197553	106197554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	38	381	0	ENST00000380013.4:c.5887dup	p.Thr1963AsnfsTer52	p.T1963Nfs*52	ENST00000380013	NM_001127208.2	1962	-/A																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247348	153247348	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	29	300	0	ENST00000281708.4:c.1454T>G	p.Val485Gly	p.V485G	ENST00000281708	NM_033632.3	485	gTt/gGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518153	187518153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	43	514	0	ENST00000441802.2:c.12541G>A	p.Glu4181Lys	p.E4181K	ENST00000441802	NM_005245.3	4181	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534484	187534484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	40	283	1	ENST00000441802.2:c.9242C>T	p.Thr3081Met	p.T3081M	ENST00000441802	NM_005245.3	3081	aCg/aTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538976	187538976	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	45	558	0	ENST00000441802.2:c.8764A>C	p.Ile2922Leu	p.I2922L	ENST00000441802	NM_005245.3	2922	Atc/Ctc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540935	187540935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	38	369	0	ENST00000441802.2:c.6805G>A	p.Val2269Met	p.V2269M	ENST00000441802	NM_005245.3	2269	Gtg/Atg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557208	187557208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	38	436	0	ENST00000441802.2:c.4154C>T	p.Pro1385Leu	p.P1385L	ENST00000441802	NM_005245.3	1385	cCt/cTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628407	187628407	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	61	782	0	ENST00000441802.2:c.2575T>C	p.Tyr859His	p.Y859H	ENST00000441802	NM_005245.3	859	Tac/Cac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629391	187629391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	119	644	1	ENST00000441802.2:c.1591C>T	p.Pro531Ser	p.P531S	ENST00000441802	NM_005245.3	531	Cct/Tct																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31410867	31410867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	61	564	0	ENST00000344624.3:c.3653C>T	p.Ala1218Val	p.A1218V	ENST00000344624		1218	gCg/gTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31422952	31422952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	60	604	0	ENST00000344624.3:c.3361G>A	p.Val1121Ile	p.V1121I	ENST00000344624		1121	Gtt/Att																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526684	31526684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	39	737	0	ENST00000344624.3:c.356C>A	p.Pro119His	p.P119H	ENST00000344624		119	cCc/cAc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35857163	35857163	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	18	339	0	ENST00000303115.3:c.82+2T>C		p.X28_splice	ENST00000303115	NM_002185.3	28																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874580	35874580	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	45	580	0	ENST00000303115.3:c.736A>C	p.Ser246Arg	p.S246R	ENST00000303115	NM_002185.3	246	Agc/Cgc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38958932	38958932	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	28	227	0	ENST00000357387.3:c.2180C>T	p.Ala727Val	p.A727V	ENST00000357387	NM_152756.3	727	gCc/gTc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178257	56178258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	59	357	0	ENST00000399503.3:c.3236dup	p.Asn1079LysfsTer2	p.N1079Kfs*2	ENST00000399503	NM_005921.1	1077	tca/tcAa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750769	57750769	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	97	445	0	ENST00000274289.3:c.1835T>C	p.Leu612Pro	p.L612P	ENST00000274289	NM_006622.3	612	cTa/cCa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67569766	67569766	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	40	372	0	ENST00000274335.5:c.428-1G>T		p.X143_splice	ENST00000274335		143																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588995	67588996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	41	317	0	ENST00000274335.5:c.1090dup	p.Met364AsnfsTer4	p.M364Nfs*4	ENST00000274335		362	-/A																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	39	293	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	109	537	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80063751	80063751	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	80	417	0	ENST00000265081.6:c.1897-1G>A		p.X633_splice	ENST00000265081	NM_002439.4	633																																																																															
APC	324	MSKCC	GRCh37	5	112111360	112111360	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	29	189	0	ENST00000257430.4:c.457A>C	p.Lys153Gln	p.K153Q	ENST00000257430	NM_000038.5	153	Aag/Cag																																																																														
APC	324	MSKCC	GRCh37	5	112116493	112116493	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	46	251	0	ENST00000257430.4:c.539del	p.Leu180TyrfsTer5	p.L180Yfs*5	ENST00000257430	NM_000038.5	180	Tta/ta																																																																														
APC	324	MSKCC	GRCh37	5	112137060	112137060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	33	367	0	ENST00000257430.4:c.814G>T	p.Ala272Ser	p.A272S	ENST00000257430	NM_000038.5	272	Gca/Tca																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	50	290	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112176291	112176291	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	38	330	2	ENST00000257430.4:c.5000A>T	p.Asn1667Ile	p.N1667I	ENST00000257430	NM_000038.5	1667	aAt/aTt																																																																														
APC	324	MSKCC	GRCh37	5	112177341	112177341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	42	343	0	ENST00000257430.4:c.6050C>T	p.Thr2017Ile	p.T2017I	ENST00000257430	NM_000038.5	2017	aCc/aTc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131927650	131927650	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	84	318	0	ENST00000265335.6:c.1722del	p.Lys574AsnfsTer24	p.K574Nfs*24	ENST00000265335		573	Aaa/aa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131938996	131938996	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	39	272	0	ENST00000265335.6:c.2212A>C	p.Ser738Arg	p.S738R	ENST00000265335		738	Agc/Cgc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149439313	149439313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	40	646	0	ENST00000286301.3:c.2082G>T	p.Glu694Asp	p.E694D	ENST00000286301	NM_005211.3	694	gaG/gaT																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149465968	149465968	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	47	796	0	ENST00000286301.3:c.23T>C	p.Leu8Pro	p.L8P	ENST00000286301	NM_005211.3	8	cTc/cCc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495446	149495446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	35	764	0	ENST00000261799.4:c.3201G>T	p.Gln1067His	p.Q1067H	ENST00000261799	NM_002609.3	1067	caG/caT																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502765	149502765	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	72	489	2	ENST00000261799.4:c.2024-1G>T		p.X675_splice	ENST00000261799	NM_002609.3	675																																																																															
FGFR4	2264	MSKCC	GRCh37	5	176518058	176518058	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	51	667	0	ENST00000292408.4:c.557del	p.Lys186ArgfsTer25	p.K186Rfs*25	ENST00000292408	NM_213647.1	186	Aag/ag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519663	176519663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	47	632	0	ENST00000292408.4:c.935G>A	p.Ser312Asn	p.S312N	ENST00000292408	NM_213647.1	312	aGc/aAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631187	176631187	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	38	486	0	ENST00000439151.2:c.1130G>A	p.Trp377Ter	p.W377*	ENST00000439151	NM_022455.4	377	tGg/tAg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638085	176638085	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	66	636	0	ENST00000439151.2:c.2685T>A	p.Ser895Arg	p.S895R	ENST00000439151	NM_022455.4	895	agT/agA																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720840	176720840	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	40	495	0	ENST00000439151.2:c.6471G>A	p.Trp2157Ter	p.W2157*	ENST00000439151	NM_022455.4	2157	tgG/tgA																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722110	176722110	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	87	427	0	ENST00000439151.2:c.7741A>G	p.Lys2581Glu	p.K2581E	ENST00000439151	NM_022455.4	2581	Aag/Gag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180036960	180036960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	104	643	0	ENST00000261937.6:c.3752G>T	p.Arg1251Met	p.R1251M	ENST00000261937	NM_182925.4	1251	aGg/aTg																																																																														
IRF4	3662	MSKCC	GRCh37	6	397241	397241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	21	276	0	ENST00000380956.4:c.626C>T	p.Ala209Val	p.A209V	ENST00000380956	NM_001195286.1	209	gCt/gTt																																																																														
E2F3	1871	MSKCC	GRCh37	6	20486929	20486929	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	29	312	0	ENST00000346618.3:c.894T>A	p.Tyr298Ter	p.Y298*	ENST00000346618	NM_001949.4	298	taT/taA																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045714	26045714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	21	262	0	ENST00000540144.1:c.76G>A	p.Ala26Thr	p.A26T	ENST00000540144	NM_003531.2	26	Gcc/Acc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056260	26056260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	45	568	0	ENST00000343677.2:c.397G>A	p.Gly133Arg	p.G133R	ENST00000343677	NM_005319.3	133	Ggg/Agg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056349	26056349	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201295771		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	37	438	2	ENST00000343677.2:c.308G>A	p.Gly103Asp	p.G103D	ENST00000343677	NM_005319.3	103	gGc/gAc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056568	26056568	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	24	252	0	ENST00000343677.2:c.89delG	p.Gly30ValfsTer33	p.G30Vfs*33	ENST00000343677	NM_005319.3	30	gGt/gt																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158709	26158709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	23	261	0	ENST00000289316.2:c.316del	p.Glu106SerfsTer29	p.E106Sfs*29	ENST00000289316	NM_138720.2	104	ccG/cc																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225384	26225384	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	13	155	0	ENST00000360408.1:c.2T>C	p.Met1?	p.M1?	ENST00000360408	NM_003532.2	1	aTg/aCg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30676084	30676084	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	32	418	0	ENST00000376406.3:c.2272A>T	p.Arg758Ter	p.R758*	ENST00000376406	NM_014641.2	758	Aga/Tga																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681829	30681829	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	37	580	2	ENST00000376406.3:c.268C>T	p.Arg90Ter	p.R90*	ENST00000376406	NM_014641.2	90	Cga/Tga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172069	32172069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	42	735	0	ENST00000375023.3:c.2963G>T	p.Gly988Val	p.G988V	ENST00000375023	NM_004557.3	988	gGa/gTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180262	32180262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	39	501	0	ENST00000375023.3:c.2669C>T	p.Ala890Val	p.A890V	ENST00000375023	NM_004557.3	890	gCa/gTa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32813386	32813386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	50	820	0	ENST00000354258.4:c.2397G>A	p.Met799Ile	p.M799I	ENST00000354258	NM_000593.5	799	atG/atA																																																																														
TAP1	6890	MSKCC	GRCh37	6	32813402	32813402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	116	799	0	ENST00000354258.4:c.2381G>A	p.Gly794Glu	p.G794E	ENST00000354258	NM_000593.5	794	gGg/gAg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32814886	32814886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	60	726	0	ENST00000354258.4:c.2179G>A	p.Asp727Asn	p.D727N	ENST00000354258	NM_000593.5	727	Gat/Aat																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790819	89790819	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	20	634	4	ENST00000336032.3:c.211delC	p.Gln71SerfsTer112	p.Q71Sfs*112	ENST00000336032	NM_006813.2	69	aCc/ac																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793754	89793755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	41	425	0	ENST00000336032.3:c.827dup	p.Glu277GlyfsTer9	p.E277Gfs*9	ENST00000336032	NM_006813.2	275	caa/cAaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956685	93956685	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	39	358	1	ENST00000369303.4:c.2551G>T	p.Glu851Ter	p.E851*	ENST00000369303	NM_004440.3	851	Gaa/Taa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553015	106553015	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	99	591	0	ENST00000369096.4:c.984del	p.Ile329PhefsTer49	p.I329Ffs*49	ENST00000369096	NM_001198.3	327	tCc/tc																																																																														
SESN1	27244	MSKCC	GRCh37	6	109322549	109322549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	56	661	0	ENST00000436639.2:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000436639	NM_014454.2	163	tAt/tGt																																																																														
FYN	2534	MSKCC	GRCh37	6	112015699	112015699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	47	533	0	ENST00000368678.4:c.1143G>T	p.Met381Ile	p.M381I	ENST00000368678		381	atG/atT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710947	117710947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	38	385	0	ENST00000368508.3:c.1325G>A	p.Arg442Gln	p.R442Q	ENST00000368508	NM_002944.2	442	cGg/cAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117714459	117714459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	74	462	0	ENST00000368508.3:c.1190G>A	p.Cys397Tyr	p.C397Y	ENST00000368508	NM_002944.2	397	tGc/tAc																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137525524	137525524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	50	601	0	ENST00000367739.4:c.491A>G	p.Glu164Gly	p.E164G	ENST00000367739	NM_000416.2	164	gAa/gGa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200456	138200456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	42	484	1	ENST00000237289.4:c.1874C>T	p.Thr625Ile	p.T625I	ENST00000237289	NM_001270507.1	625	aCa/aTa																																																																														
LATS1	9113	MSKCC	GRCh37	6	149982876	149982876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	38	455	0	ENST00000253339.5:c.3382G>T	p.Val1128Leu	p.V1128L	ENST00000253339		1128	Gta/Tta																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099825	157099825	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	26	441	0	ENST00000346085.5:c.762A>T	p.Gln254His	p.Q254H	ENST00000346085	NM_020732.3	254	caA/caT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405795	157405795	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	58	309	0	ENST00000346085.5:c.2038-1G>T		p.X680_splice	ENST00000346085	NM_020732.3	680																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157405974	157405974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	47	523	0	ENST00000346085.5:c.2216C>A	p.Pro739His	p.P739H	ENST00000346085	NM_020732.3	739	cCt/cAt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157406036	157406036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	52	351	0	ENST00000346085.5:c.2278C>T	p.Pro760Ser	p.P760S	ENST00000346085	NM_020732.3	760	Cca/Tca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521942	157521942	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	43	433	0	ENST00000346085.5:c.4214A>G	p.Asn1405Ser	p.N1405S	ENST00000346085	NM_020732.3	1405	aAc/aGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527806	157527806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	39	423	0	ENST00000346085.5:c.5531G>T	p.Arg1844Met	p.R1844M	ENST00000346085	NM_020732.3	1844	aGg/aTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528599	157528599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	61	658	0	ENST00000346085.5:c.6324G>T	p.Gln2108His	p.Q2108H	ENST00000346085	NM_020732.3	2108	caG/caT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959019	2959019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	35	607	0	ENST00000396946.4:c.2497C>T	p.Pro833Ser	p.P833S	ENST00000396946	NM_032415.4	833	Ccc/Tcc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962345	2962345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	82	691	1	ENST00000396946.4:c.2192G>T	p.Cys731Phe	p.C731F	ENST00000396946	NM_032415.4	731	tGc/tTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2978390	2978390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	89	784	0	ENST00000396946.4:c.940G>A	p.Glu314Lys	p.E314K	ENST00000396946	NM_032415.4	314	Gag/Aag																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026430	6026430	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	35	196	0	ENST00000265849.7:c.1966G>T	p.Glu656Ter	p.E656*	ENST00000265849	NM_000535.5	656	Gaa/Taa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026725	6026725	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	88	619	0	ENST00000265849.7:c.1671T>G	p.Asp557Glu	p.D557E	ENST00000265849	NM_000535.5	557	gaT/gaG																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426866	6426866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	105	577	0	ENST00000356142.4:c.59T>C	p.Leu20Pro	p.L20P	ENST00000356142	NM_018890.3	20	cTg/cCg																																																																														
HGF	3082	MSKCC	GRCh37	7	81358966	81358966	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	42	556	0	ENST00000222390.5:c.995A>C	p.Gln332Pro	p.Q332P	ENST00000222390	NM_000601.4	332	cAg/cCg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508319	106508319	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	32	318	0	ENST00000359195.3:c.313C>T	p.Gln105Ter	p.Q105*	ENST00000359195	NM_002649.2	105	Cag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509633	106509633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	41	478	0	ENST00000359195.3:c.1627G>A	p.Val543Ile	p.V543I	ENST00000359195	NM_002649.2	543	Gtt/Att																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545697	106545698	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	88	577	0	ENST00000359195.3:c.3179dup	p.Asn1060LysfsTer2	p.N1060Kfs*2	ENST00000359195	NM_002649.2	1058	-/A																																																																														
MET	4233	MSKCC	GRCh37	7	116339643	116339643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	56	424	0	ENST00000397752.3:c.505C>T	p.Pro169Ser	p.P169S	ENST00000397752	NM_000245.2	169	Ccc/Tcc																																																																														
MET	4233	MSKCC	GRCh37	7	116339841	116339841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	60	548	0	ENST00000397752.3:c.703A>G	p.Ile235Val	p.I235V	ENST00000397752	NM_000245.2	235	Att/Gtt																																																																														
MET	4233	MSKCC	GRCh37	7	116395436	116395436	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	30	499	0	ENST00000397752.3:c.1729G>T	p.Gly577Ter	p.G577*	ENST00000397752	NM_000245.2	577	Gga/Tga																																																																														
MET	4233	MSKCC	GRCh37	7	116412710	116412710	+	intron_variant	Intron	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	59	873	0	ENST00000397752.3:c.3028+667T>C		p.*1010*	ENST00000397752	NM_000245.2																																																																																
MET	4233	MSKCC	GRCh37	7	116418859	116418859	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	78	329	0	ENST00000397752.3:c.3370T>A	p.Phe1124Ile	p.F1124I	ENST00000397752	NM_000245.2	1124	Ttt/Att																																																																														
SMO	6608	MSKCC	GRCh37	7	128845476	128845476	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	63	763	0	ENST00000249373.3:c.773A>T	p.Asn258Ile	p.N258I	ENST00000249373	NM_005631.4	258	aAc/aTc																																																																														
SMO	6608	MSKCC	GRCh37	7	128846428	128846428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	35	434	1	ENST00000249373.3:c.1264G>A	p.Gly422Arg	p.G422R	ENST00000249373	NM_005631.4	422	Gga/Aga																																																																														
SMO	6608	MSKCC	GRCh37	7	128851536	128851536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	50	662	0	ENST00000249373.3:c.1861C>T	p.His621Tyr	p.H621Y	ENST00000249373	NM_005631.4	621	Cat/Tat																																																																														
EZH2	2146	MSKCC	GRCh37	7	148507433	148507433	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	56	480	0	ENST00000320356.2:c.2021T>C	p.Leu674Ser	p.L674S	ENST00000320356	NM_004456.4	674	tTg/tCg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148515176	148515176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	48	361	1	ENST00000320356.2:c.1033G>A	p.Ala345Thr	p.A345T	ENST00000320356	NM_004456.4	345	Gct/Act																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845684	151845684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	95	620	0	ENST00000262189.6:c.13328A>G	p.Gln4443Arg	p.Q4443R	ENST00000262189	NM_170606.2	4443	cAg/cGg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859911	151859911	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	71	469	0	ENST00000262189.6:c.10751del	p.Gly3584AspfsTer13	p.G3584Dfs*13	ENST00000262189	NM_170606.2	3584	gGa/ga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874012	151874013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	39	592	1	ENST00000262189.6:c.8525dup	p.Asn2842LysfsTer2	p.N2842Kfs*2	ENST00000262189	NM_170606.2	2842	aat/aaAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877959	151877959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	43	404	0	ENST00000262189.6:c.6986G>A	p.Gly2329Glu	p.G2329E	ENST00000262189	NM_170606.2	2329	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878862	151878862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	112	604	0	ENST00000262189.6:c.6083G>A	p.Arg2028Gln	p.R2028Q	ENST00000262189	NM_170606.2	2028	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891651	151891651	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	51	289	0	ENST00000262189.6:c.4381A>G	p.Ile1461Val	p.I1461V	ENST00000262189	NM_170606.2	1461	Att/Gtt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152055745	152055745	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	81	543	3	ENST00000262189.6:c.177del	p.Thr61LeufsTer44	p.T61Lfs*44	ENST00000262189	NM_170606.2	59	ggG/gg																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538933	23538933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	40	655	0	ENST00000380871.4:c.506A>G	p.Lys169Arg	p.K169R	ENST00000380871	NM_006167.3	169	aAg/aGg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194729	29194729	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	89	778	1	ENST00000240100.2:c.999G>T	p.Gln333His	p.Q333H	ENST00000240100	NM_001394.6	333	caG/caT																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38173059	38173059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	46	400	0	ENST00000317025.8:c.1990G>T	p.Gly664Cys	p.G664C	ENST00000317025	NM_023034.1	664	Ggc/Tgc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271244	38271244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	36	706	0	ENST00000425967.3:c.2464G>T	p.Gly822Trp	p.G822W	ENST00000425967	NM_001174067.1	822	Ggg/Tgg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38314969	38314969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	54	707	0	ENST00000425967.3:c.95C>A	p.Thr32Asn	p.T32N	ENST00000425967	NM_001174067.1	32	aCt/aAt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370975	55370975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	39	607	0	ENST00000297316.4:c.277C>A	p.Leu93Met	p.L93M	ENST00000297316	NM_022454.3	93	Ctg/Atg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371002	55371002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	26	530	1	ENST00000297316.4:c.304C>A	p.Leu102Met	p.L102M	ENST00000297316	NM_022454.3	102	Ctg/Atg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372230	55372230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	32	434	0	ENST00000297316.4:c.920G>A	p.Gly307Asp	p.G307D	ENST00000297316	NM_022454.3	307	gGc/gAc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372287	55372288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	29	578	0	ENST00000297316.4:c.983dup	p.Gly331ArgfsTer34	p.G331Rfs*34	ENST00000297316	NM_022454.3	326	cac/caCc																																																																														
LYN	4067	MSKCC	GRCh37	8	56922580	56922580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	99	518	0	ENST00000519728.1:c.1450G>A	p.Ala484Thr	p.A484T	ENST00000519728	NM_002350.3	484	Gca/Aca																																																																														
PREX2	80243	MSKCC	GRCh37	8	69011988	69011988	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	65	705	0	ENST00000288368.4:c.2625A>T	p.Glu875Asp	p.E875D	ENST00000288368	NM_024870.2	875	gaA/gaT																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030790	69030790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	32	393	0	ENST00000288368.4:c.3332G>A	p.Cys1111Tyr	p.C1111Y	ENST00000288368	NM_024870.2	1111	tGc/tAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058565	69058616	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCATCCTGTTCTTTTTGCACAAGGTAAACTGTTTCTCTTTTGATGGCTGCTA	TCATCCTGTTCTTTTTGCACAAGGTAAACTGTTTCTCTTTTGATGGCTGCTA	GATATTTAATAGTATATTACTTCCTAAAATAAGGATATGCTAGATGG			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	85	682	2	ENST00000288368.4:c.4209_4231+29delinsGATATTTAATAGTATATTACTTCCTAAAATAAGGATATGCTAGATGG		p.X1403_splice	ENST00000288368	NM_024870.2	1403																																																																															
NBN	4683	MSKCC	GRCh37	8	90958479	90958480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	36	507	0	ENST00000265433.3:c.1958dup	p.Leu654AlafsTer5	p.L654Afs*5	ENST00000265433	NM_002485.4	653	aag/aaAg																																																																														
MYC	4609	MSKCC	GRCh37	8	128751043	128751043	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	58	545	0	ENST00000377970.2:c.580C>T	p.Gln194Ter	p.Q194*	ENST00000377970	NM_002467.4	194	Cag/Tag																																																																														
AGO2	27161	MSKCC	GRCh37	8	141583031	141583031	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	51	604	1	ENST00000220592.5:c.216G>T	p.Arg72Ser	p.R72S	ENST00000220592	NM_012154.3	72	agG/agT																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738379	145738379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	46	687	0	ENST00000428558.2:c.2606G>A	p.Gly869Asp	p.G869D	ENST00000428558	NM_004260.3	869	gGt/gAt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741607	145741607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	43	750	0	ENST00000428558.2:c.896C>A	p.Pro299Gln	p.P299Q	ENST00000428558	NM_004260.3	299	cCa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486205	8486205	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	31	425	0	ENST00000356435.5:c.2612T>A	p.Leu871His	p.L871H	ENST00000356435		871	cTt/cAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499748	8499748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	44	628	0	ENST00000356435.5:c.2221C>T	p.His741Tyr	p.H741Y	ENST00000356435		741	Cat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518185	8518185	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	38	421	0	ENST00000356435.5:c.1206del	p.Pro403LeufsTer7	p.P403Lfs*7	ENST00000356435		402	ggG/gg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8526627	8526627	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	76	399	0	ENST00000356435.5:c.568G>T	p.Gly190Ter	p.G190*	ENST00000356435		190	Gga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971119	21971120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	65	530	0	ENST00000304494.5:c.238dup	p.Arg80ProfsTer40	p.R80Pfs*40	ENST00000304494	NM_000077.4	80	cga/cCga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971119	21971120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	65	530	0	ENST00000304494.5:c.238dup	p.Arg80ProfsTer40	p.R80Pfs*40	ENST00000304494	NM_000077.4	80	cga/cCga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971119	21971120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	65	530	0	ENST00000304494.5:c.238dup	p.Arg80ProfsTer40	p.R80Pfs*40	ENST00000304494	NM_000077.4	80	cga/cCga																																																																														
TEK	7010	MSKCC	GRCh37	9	27212833	27212833	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	58	708	0	ENST00000380036.4:c.2815C>T	p.Gln939Ter	p.Q939*	ENST00000380036	NM_000459.3	939	Cag/Tag																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966649	36966649	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	40	514	0	ENST00000358127.4:c.677del	p.Gly226GlufsTer52	p.G226Efs*52	ENST00000358127	NM_001280556.1	226	gGa/ga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635172	87635172	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	33	512	0	ENST00000277120.3:c.2224A>G	p.Met742Val	p.M742V	ENST00000277120		742	Atg/Gtg																																																																														
SYK	6850	MSKCC	GRCh37	9	93637126	93637127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	35	403	0	ENST00000375746.1:c.1181dup	p.Val395SerfsTer16	p.V395Sfs*16	ENST00000375746	NM_001174167.1	392	-/A																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209521	98209521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	42	554	0	ENST00000331920.6:c.4017G>A	p.Trp1339Ter	p.W1339*	ENST00000331920	NM_000264.3	1339	tgG/tgA																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904843	101904843	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	99	398	0	ENST00000374994.4:c.831G>A	p.Trp277Ter	p.W277*	ENST00000374994	NM_004612.2	277	tgG/tgA																																																																														
ABL1	25	MSKCC	GRCh37	9	133730443	133730443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	39	437	0	ENST00000318560.5:c.509G>T	p.Arg170Met	p.R170M	ENST00000318560	NM_005157.4	170	aGg/aTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133748300	133748300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	86	559	0	ENST00000318560.5:c.961G>A	p.Gly321Arg	p.G321R	ENST00000318560	NM_005157.4	321	Ggg/Agg																																																																														
ABL1	25	MSKCC	GRCh37	9	133753826	133753826	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	52	609	0	ENST00000318560.5:c.1295T>A	p.Ile432Asn	p.I432N	ENST00000318560	NM_005157.4	432	aTt/aAt																																																																														
ABL1	25	MSKCC	GRCh37	9	133755989	133755989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	54	512	0	ENST00000318560.5:c.1616C>T	p.Ala539Val	p.A539V	ENST00000318560	NM_005157.4	539	gCa/gTa																																																																														
ABL1	25	MSKCC	GRCh37	9	133760511	133760511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	38	702	0	ENST00000318560.5:c.2834C>A	p.Ala945Asp	p.A945D	ENST00000318560	NM_005157.4	945	gCt/gAt																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815627	139815627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	45	591	0	ENST00000247668.2:c.1098G>T	p.Gln366His	p.Q366H	ENST00000247668	NM_021138.3	366	caG/caT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934126	39934127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	45	335	0	ENST00000378444.4:c.472dup	p.Ser158LysfsTer28	p.S158Kfs*28	ENST00000378444	NM_001123385.1	158	agt/aAgt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44935949	44935949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	38	203	0	ENST00000377967.4:c.2710G>T	p.Gly904Cys	p.G904C	ENST00000377967	NM_021140.2	904	Ggt/Tgt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044872	47044872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	34	421	0	ENST00000329236.7:c.1964G>A	p.Ser655Asn	p.S655N	ENST00000329236	NM_001204466.1	655	aGc/aAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409931	63409931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	34	206	0	ENST00000330258.3:c.3236G>A	p.Gly1079Asp	p.G1079D	ENST00000330258	NM_152424.3	1079	gGc/gAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410936	63410936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189503587		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	99	357	0	ENST00000330258.3:c.2231C>T	p.Ala744Val	p.A744V	ENST00000330258	NM_152424.3	744	gCc/gTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412174	63412174	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	17	482	0	ENST00000330258.3:c.993A>G	p.Ile331Met	p.I331M	ENST00000330258	NM_152424.3	331	atA/atG																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413082	63413082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138399473		P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	26	372	0	ENST00000330258.3:c.85G>A	p.Ala29Thr	p.A29T	ENST00000330258	NM_152424.3	29	Gcc/Acc																																																																														
AR	367	MSKCC	GRCh37	X	66766444	66766444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			10	46	145	0	ENST00000374690.3:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000374690	NM_000044.3	486	Ccc/Tcc																																																																														
ATRX	546	MSKCC	GRCh37	X	76814280	76814280	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	44	196	1	ENST00000373344.5:c.6364C>A	p.Leu2122Ile	p.L2122I	ENST00000373344	NM_000489.3	2122	Cta/Ata																																																																														
ATRX	546	MSKCC	GRCh37	X	76849320	76849320	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	39	206	0	ENST00000373344.5:c.5957-1G>T		p.X1986_splice	ENST00000373344	NM_000489.3	1986																																																																															
ATRX	546	MSKCC	GRCh37	X	76937371	76937371	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	78	294	0	ENST00000373344.5:c.3377A>G	p.Asp1126Gly	p.D1126G	ENST00000373344	NM_000489.3	1126	gAt/gGt																																																																														
ATRX	546	MSKCC	GRCh37	X	76939178	76939178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	22	330	0	ENST00000373344.5:c.1570G>A	p.Val524Ile	p.V524I	ENST00000373344	NM_000489.3	524	Gtt/Att																																																																														
ATRX	546	MSKCC	GRCh37	X	76939798	76939798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	107	311	1	ENST00000373344.5:c.950C>A	p.Pro317Gln	p.P317Q	ENST00000373344	NM_000489.3	317	cCa/cAa																																																																														
BTK	695	MSKCC	GRCh37	X	100611814	100611814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	47	313	0	ENST00000308731.7:c.1307C>T	p.Ser436Phe	p.S436F	ENST00000308731	NM_000061.2	436	tCc/tTc																																																																														
BTK	695	MSKCC	GRCh37	X	100615075	100615075	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	126	291	0	ENST00000308731.7:c.839+1G>T		p.X280_splice	ENST00000308731	NM_000061.2	280																																																																															
STAG2	10735	MSKCC	GRCh37	X	123171465	123171465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	31	240	0	ENST00000218089.9:c.377G>A	p.Gly126Asp	p.G126D	ENST00000218089	NM_001042749.1	126	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	328	626	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508059	106508059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	79	210	0	ENST00000359195.3:c.53G>T	p.Arg18Leu	p.R18L	ENST00000359195	NM_002649.2	18	cGa/cTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299836	15299836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	253	648	0	ENST00000263388.2:c.1342G>A	p.Asp448Asn	p.D448N	ENST00000263388	NM_000435.2	448	Gac/Aac																																																																														
PMS1	5378	MSKCC	GRCh37	2	190738293	190738293	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	46	360	0	ENST00000441310.2:c.2545G>T	p.Asp849Tyr	p.D849Y	ENST00000441310	NM_000534.4	849	Gat/Tat																																																																														
NF1	4763	MSKCC	GRCh37	17	29664557	29664557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	141	502	0	ENST00000358273.4:c.6599C>A	p.Thr2200Lys	p.T2200K	ENST00000358273	NM_001042492.2	2200	aCa/aAa																																																																														
RARA	5914	MSKCC	GRCh37	17	38506139	38506139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	241	496	0	ENST00000254066.5:c.431G>A	p.Arg144Gln	p.R144Q	ENST00000254066	NM_000964.3	144	cGa/cAa																																																																														
STK11	6794	MSKCC	GRCh37	19	1207119	1207122	+	frameshift_variant	Frame_Shift_Del	DEL	GGAG	GGAG	-			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	256	724	0	ENST00000326873.7:c.207_210del	p.Glu70ArgfsTer25	p.E70Rfs*25	ENST00000326873	NM_000455.4	69	tcGGAG/tc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176521304	176522326	+	splice_region_variant,intron_variant	Splice_Region	DEL	CTCCCAGCCCAAGGATTGTGGAAAGTGCCTGGCTCATAGTCAGGGCTCAATAAATCTTCACCACTGGGGTGATGATGATGAGAAGAATTTGGTGTGACAGGCTTGATATCCTGTGTCAGCATTAGTCTGTGTCAGCTTTGACTTCACATCTCCTTGTCAGCCTCACAGGCCCTCTACCTCCTTCCTTATGGTTCCCCCCAGACACACCCTCAGCCTCCCTTGGACCCTCCCTAGGTCTGCCCCCCACGTCCACTGCTGTAGGAGGACAGCCCTTCTGCTTGCACCCAGGCCCAGCCCCGGGGTGCTCTTGCTGGGCACTCCTGCACCCCACCCATCAGGGCCTCTCCTTGCAGTTCCCCAGCCCCCTCTGCAAGAATGGCCTCCACTGCTCTTCTGCTCCTCCCCTCCTCTCTACACAGCTGGGGCCACCTGGTGCTCCCTGGGAGGCAGGGATTGAGAAATGCACATTGTGTCATTGGCCCAGGGCCACAGGTCAGCCCCAGGGGCTCAGCCAGAGAAGCCAAAGCAGCCTTCTTCCCAAGCTCCCCGGCTGCACCCGGCCTGCCGCCAGCTCCCTGAATTCCCAGGCCAGTTGGAAGCCAGGCCCTGGTCAAACAGACCCCAGGGCGCCAGCCTGCTTTCCGCACCCAGAAGCTCTGACCCCATGCGGGGACTACCGCTGACCCCTCCAGCGGCAGCTTCCTTCCTTCCTTCCTGCTCCGAGCTCTTCCCCTCTCTCCTGTGTCCTGGGCCTGCCCGCTGGAAGGCCTGCCTCTTAGATCCTTGATACAGTTGCATCCTTGCAACTGCTGTGACAGGCAGGGTGTGACCCACTGCTCTGTTTCCCACAAGACGAACCTGAGGTTCAGAGACGCTAGGAGACTTTTTCAAGGCCACACAGCCTAGCAAGGATTCAGCCCTAGACCTACGTAGCCCTGGTCCAGTGCTGCTTGTCCTGCACCTGCCTCTGCATGCTCCCTCGTGCAGTTGGAGGGCAGCCTCTTCACCCCGTCTGCTGCCCTT	CTCCCAGCCCAAGGATTGTGGAAAGTGCCTGGCTCATAGTCAGGGCTCAATAAATCTTCACCACTGGGGTGATGATGATGAGAAGAATTTGGTGTGACAGGCTTGATATCCTGTGTCAGCATTAGTCTGTGTCAGCTTTGACTTCACATCTCCTTGTCAGCCTCACAGGCCCTCTACCTCCTTCCTTATGGTTCCCCCCAGACACACCCTCAGCCTCCCTTGGACCCTCCCTAGGTCTGCCCCCCACGTCCACTGCTGTAGGAGGACAGCCCTTCTGCTTGCACCCAGGCCCAGCCCCGGGGTGCTCTTGCTGGGCACTCCTGCACCCCACCCATCAGGGCCTCTCCTTGCAGTTCCCCAGCCCCCTCTGCAAGAATGGCCTCCACTGCTCTTCTGCTCCTCCCCTCCTCTCTACACAGCTGGGGCCACCTGGTGCTCCCTGGGAGGCAGGGATTGAGAAATGCACATTGTGTCATTGGCCCAGGGCCACAGGTCAGCCCCAGGGGCTCAGCCAGAGAAGCCAAAGCAGCCTTCTTCCCAAGCTCCCCGGCTGCACCCGGCCTGCCGCCAGCTCCCTGAATTCCCAGGCCAGTTGGAAGCCAGGCCCTGGTCAAACAGACCCCAGGGCGCCAGCCTGCTTTCCGCACCCAGAAGCTCTGACCCCATGCGGGGACTACCGCTGACCCCTCCAGCGGCAGCTTCCTTCCTTCCTTCCTGCTCCGAGCTCTTCCCCTCTCTCCTGTGTCCTGGGCCTGCCCGCTGGAAGGCCTGCCTCTTAGATCCTTGATACAGTTGCATCCTTGCAACTGCTGTGACAGGCAGGGTGTGACCCACTGCTCTGTTTCCCACAAGACGAACCTGAGGTTCAGAGACGCTAGGAGACTTTTTCAAGGCCACACAGCCTAGCAAGGATTCAGCCCTAGACCTACGTAGCCCTGGTCCAGTGCTGCTTGTCCTGCACCTGCCTCTGCATGCTCCCTCGTGCAGTTGGAGGGCAGCCTCTTCACCCCGTCTGCTGCCCTT	-			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	26	1	0	ENST00000292408.4:c.1519+528_1520-5del		p.X507_splice	ENST00000292408	NM_213647.1	507																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729255	41729255	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	83	470	0	ENST00000242208.4:c.1274G>C	p.Cys425Ser	p.C425S	ENST00000242208	NM_002192.2	425	tGc/tCc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509637	106509637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	218	466	0	ENST00000359195.3:c.1631G>T	p.Arg544Leu	p.R544L	ENST00000359195	NM_002649.2	544	cGa/cTa																																																																														
NBN	4683	MSKCC	GRCh37	8	90995060	90995060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	55	426	0	ENST00000265433.3:c.61G>T	p.Gly21Cys	p.G21C	ENST00000265433	NM_002485.4	21	Ggc/Tgc																																																																														
MYC	4609	MSKCC	GRCh37	8	128751075	128751076	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1418	141	542	0	ENST00000377970.2:c.613dup	p.Asp205GlyfsTer53	p.D205Gfs*53	ENST00000377970	NM_002467.4	204	-/G																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376651	8376651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	111	572	1	ENST00000356435.5:c.4462G>A	p.Val1488Met	p.V1488M	ENST00000356435		1488	Gtg/Atg																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152857997	152857997	+	synonymous_variant	Silent	SNP	G	G	A	rs201983563		P-0035316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	107	123	0	ENST00000406277.2:c.618C>T	p.Pro206=	p.P206=	ENST00000406277	NM_152274.4	206	ccC/ccT																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	277	513	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	250	529	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																														
NF1	4763	MSKCC	GRCh37	17	29562981	29562981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	288	666	1	ENST00000358273.4:c.3916C>T	p.Arg1306Ter	p.R1306*	ENST00000358273	NM_001042492.2	1306	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29679274	29679274	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	154	338	0	ENST00000358273.4:c.7458-1G>A		p.X2486_splice	ENST00000358273	NM_001042492.2	2486																																																																															
FLT4	2324	MSKCC	GRCh37	5	180043904	180043904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56082504		P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	584	797	2	ENST00000261937.6:c.3092G>A	p.Arg1031Gln	p.R1031Q	ENST00000261937	NM_182925.4	1031	cGa/cAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211050	55211050	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17289589		P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	277	599	0	ENST00000275493.2:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000275493	NM_005228.3	98	cGa/cAa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091207	29091207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	154	170	0	ENST00000328354.6:c.1283C>T	p.Ser428Phe	p.S428F	ENST00000328354	NM_007194.3	428	tCt/tTt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	652	619	1	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032257	26032257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	123	277	0	ENST00000244661.2:c.32C>T	p.Ser11Phe	p.S11F	ENST00000244661	NM_003537.3	11	tCc/tTc																																																																														
MET	4233	MSKCC	GRCh37	7	116380017	116380017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	533	555	0	ENST00000397752.3:c.1406G>A	p.Arg469Gln	p.R469Q	ENST00000397752	NM_000245.2	469	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499706	8499706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	285	665	0	ENST00000356435.5:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000356435		755	Gaa/Aaa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249824	110249824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	316	839	0	ENST00000374672.4:c.851C>T	p.Ser284Leu	p.S284L	ENST00000374672	NM_004235.4	284	tCg/tTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279680	123279680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	138	308	0	ENST00000358487.5:c.752G>A	p.Arg251Gln	p.R251Q	ENST00000358487	NM_000141.4	251	cGa/cAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956771	68956771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	427	644	2	ENST00000288368.4:c.889C>T	p.Arg297Cys	p.R297C	ENST00000288368	NM_024870.2	297	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	184	445	1				ENST00000310581	NM_198253.2																																																																																
KDR	3791	MSKCC	GRCh37	4	55955959	55955959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	245	480	0	ENST00000263923.4:c.3203C>T	p.Pro1068Leu	p.P1068L	ENST00000263923	NM_002253.2	1068	cCt/cTt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964333	70964333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	213	351	0	ENST00000276594.2:c.1695G>A	p.Met565Ile	p.M565I	ENST00000276594	NM_024504.3	565	atG/atA																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1976665	1976665	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	270	681	0	ENST00000382891.5:c.3448A>G	p.Thr1150Ala	p.T1150A	ENST00000382891	NM_133335.3	1150	Acc/Gcc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688747	47688747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	219	371	1	ENST00000347630.2:c.553C>T	p.Arg185Trp	p.R185W	ENST00000347630	NM_001007230.1	185	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979556	2979556	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	417	475	0	ENST00000396946.4:c.691C>T	p.Gln231Ter	p.Q231*	ENST00000396946	NM_032415.4	231	Cag/Tag																																																																														
SETD8	387893	MSKCC	GRCh37	12	123879807	123879807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	411	412	0	ENST00000330479.4:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000330479	NM_020382.3	168	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425230	49425230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199797812		P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	420	1009	1	ENST00000301067.7:c.13258C>T	p.Arg4420Trp	p.R4420W	ENST00000301067	NM_003482.3	4420	Cgg/Tgg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348802	118348802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	159	312	0	ENST00000534358.1:c.3455C>T	p.Ser1152Leu	p.S1152L	ENST00000534358	NM_005933.3	1152	tCg/tTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971155	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	210	561	0	ENST00000304494.5:c.203del	p.Ala68GlyfsTer78	p.A68Gfs*78	ENST00000304494	NM_000077.4	68	gCg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971155	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	210	561	0	ENST00000304494.5:c.203del	p.Ala68GlyfsTer78	p.A68Gfs*78	ENST00000304494	NM_000077.4	68	gCg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971155	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	210	561	0	ENST00000304494.5:c.203del	p.Ala68GlyfsTer78	p.A68Gfs*78	ENST00000304494	NM_000077.4	68	gCg/gg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	217	542	0				ENST00000310581	NM_198253.2																																																																																
DDR2	4921	MSKCC	GRCh37	1	162737121	162737121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	468	540	0	ENST00000367921.3:c.1265G>A	p.Arg422Lys	p.R422K	ENST00000367921	NM_006182.2	422	aGg/aAg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741336	17741336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	314	747	0	ENST00000250003.3:c.7C>A	p.Leu3Ile	p.L3I	ENST00000250003	NM_002478.4	3	Cta/Ata																																																																														
PAK1	5058	MSKCC	GRCh37	11	77069965	77069965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	271	652	0	ENST00000356341.3:c.575C>T	p.Pro192Leu	p.P192L	ENST00000356341	NM_002576.4	192	cCa/cTa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195697	102195697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	205	432	1	ENST00000263464.3:c.457G>A	p.Asp153Asn	p.D153N	ENST00000263464	NM_001165.4	153	Gat/Aat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211467	46211470	+	frameshift_variant	Frame_Shift_Del	DEL	AGTT	AGTT	-			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	128	252	0	ENST00000334344.6:c.434_437del	p.Ser145MetfsTer69	p.S145Mfs*69	ENST00000334344	NM_152641.2	145	AGTTat/at																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244386	46244386	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	183	503	0	ENST00000334344.6:c.2481del	p.Gln827HisfsTer22	p.Q827Hfs*22	ENST00000334344	NM_152641.2	827	cAa/ca																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857965	9857965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	293	637	1	ENST00000330684.3:c.3436G>A	p.Asp1146Asn	p.D1146N	ENST00000330684	NM_001134407.1	1146	Gac/Aac																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349203	11349203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	78	175	0	ENST00000332029.2:c.133G>A	p.Val45Ile	p.V45I	ENST00000332029	NM_003745.1	45	Gtc/Atc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828294	72828294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	258	623	0	ENST00000268489.5:c.8287G>A	p.Asp2763Asn	p.D2763N	ENST00000268489	NM_006885.3	2763	Gat/Aat																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216439	7216439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	233	629	0	ENST00000380728.2:c.809C>T	p.Ser270Phe	p.S270F	ENST00000380728		270	tCt/tTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29587415	29587415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	204	443	0	ENST00000358273.4:c.4459C>T	p.Pro1487Ser	p.P1487S	ENST00000358273	NM_001042492.2	1487	Cct/Tct																																																																														
MALT1	10892	MSKCC	GRCh37	18	56348433	56348433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	151	311	0	ENST00000348428.3:c.241G>A	p.Val81Ile	p.V81I	ENST00000348428	NM_006785.3	81	Gta/Ata																																																																														
AXL	558	MSKCC	GRCh37	19	41727874	41727874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	371	890	0	ENST00000301178.4:c.499G>A	p.Glu167Lys	p.E167K	ENST00000301178	NM_021913.4	167	Gag/Aag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972795	25972795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	261	604	0	ENST00000435504.4:c.1630G>A	p.Ala544Thr	p.A544T	ENST00000435504		544	Gcg/Acg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26101085	26101085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	216	534	0	ENST00000435504.4:c.7G>T	p.Glu3Ter	p.E3*	ENST00000435504		3	Gaa/Taa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182589	99182589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	216	547	0	ENST00000074304.5:c.2392C>T	p.Leu798Phe	p.L798F	ENST00000074304	NM_001134224.1	798	Ctc/Ttc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713377	40713377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	295	758	0	ENST00000373198.4:c.4138G>A	p.Glu1380Lys	p.E1380K	ENST00000373198	NM_133170.3	1380	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730871	40730871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	287	766	1	ENST00000373198.4:c.3664C>T	p.His1222Tyr	p.H1222Y	ENST00000373198	NM_133170.3	1222	Cat/Tat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125494	47125494	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	249	574	1	ENST00000409792.3:c.5776C>T	p.Gln1926Ter	p.Q1926*	ENST00000409792	NM_014159.6	1926	Caa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164690	47164690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	172	393	0	ENST00000409792.3:c.1436C>T	p.Ser479Phe	p.S479F	ENST00000409792	NM_014159.6	479	tCt/tTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670621	134670621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	377	937	0	ENST00000398015.3:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000398015	NM_004441.4	178	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921514	178921514	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	164	402	0	ENST00000263967.3:c.996T>G	p.Ser332Arg	p.S332R	ENST00000263967	NM_006218.2	332	agT/agG																																																																														
BCL6	604	MSKCC	GRCh37	3	187442814	187442814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	255	561	1	ENST00000232014.4:c.1892C>T	p.Pro631Leu	p.P631L	ENST00000232014	NM_001130845.1	631	cCc/cTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955073	55955073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	254	539	1	ENST00000263923.4:c.3472G>A	p.Glu1158Lys	p.E1158K	ENST00000263923	NM_002253.2	1158	Gaa/Aaa																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84403388	84403388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	228	396	0	ENST00000321945.7:c.97C>T	p.Leu33Phe	p.L33F	ENST00000321945	NM_139076.2	33	Ctt/Ttt																																																																														
TET2	54790	MSKCC	GRCh37	4	106196610	106196610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	240	516	0	ENST00000380013.4:c.4943C>T	p.Ser1648Phe	p.S1648F	ENST00000380013	NM_001127208.2	1648	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538860	187538860	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	110	232	0	ENST00000441802.2:c.8878+2T>C		p.X2960_splice	ENST00000441802	NM_005245.3	2960																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638816	176638816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	592	596	0	ENST00000439151.2:c.3416C>T	p.Ser1139Phe	p.S1139F	ENST00000439151	NM_022455.4	1139	tCt/tTt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680200	30680200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	430	931	0	ENST00000376406.3:c.1519G>A	p.Gly507Arg	p.G507R	ENST00000376406	NM_014641.2	507	Ggg/Agg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967994	93967994	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	205	436	0	ENST00000369303.4:c.1933G>C	p.Gly645Arg	p.G645R	ENST00000369303	NM_004440.3	645	Ggt/Cgt																																																																														
HGF	3082	MSKCC	GRCh37	7	81359036	81359036	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	443	586	1	ENST00000222390.5:c.925C>T	p.Gln309Ter	p.Q309*	ENST00000222390	NM_000601.4	309	Caa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878259	151878259	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	336	656	0	ENST00000262189.6:c.6686T>C	p.Ile2229Thr	p.I2229T	ENST00000262189	NM_170606.2	2229	aTt/aCt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68934209	68934270	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CATAGGTTAAAATTGCAGAATGGTGAATAAAATGACTAATTTATTCTTACATGAATTCACAG	CATAGGTTAAAATTGCAGAATGGTGAATAAAATGACTAATTTATTCTTACATGAATTCACAG	ACATACAGTAACACATAAATATACACTTACCA			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	95	283	2	ENST00000288368.4:c.337-62_337-1delinsACATACAGTAACACATAAATATACACTTACCA		p.X113_splice	ENST00000288368	NM_024870.2	113																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992747	68992747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	280	635	0	ENST00000288368.4:c.1712G>A	p.Gly571Glu	p.G571E	ENST00000288368	NM_024870.2	571	gGa/gAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69103956	69103956	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	235	507	0	ENST00000288368.4:c.4347-1G>A		p.X1449_splice	ENST00000288368	NM_024870.2	1449																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8460424	8460424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	112	291	0	ENST00000356435.5:c.3862C>T	p.Leu1288Phe	p.L1288F	ENST00000356435		1288	Ctt/Ttt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971157	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	CT			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	192	579	1	ENST00000304494.5:c.201_203delinsAG	p.Ala68GlyfsTer78	p.A68Gfs*78	ENST00000304494	NM_000077.4	67	ggCGCg/ggAGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971155	21971157	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	CT			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	192	579	1	ENST00000304494.5:c.201_203delinsAG	p.Ala68GlyfsTer78	p.A68Gfs*78	ENST00000304494	NM_000077.4	67	ggCGCg/ggAGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971157	21971157	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	192	561	1	ENST00000361570.3:c.367C>A	p.Arg123Ser	p.R123S	ENST00000361570	NM_058195.3	123	Cgc/Agc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	121	595	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	93	536	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	36	338	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	36	338	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	36	338	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	110	230	0				ENST00000310581	NM_198253.2																																																																																
FLT1	2321	MSKCC	GRCh37	13	29041721	29041721	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	66	516	0	ENST00000282397.4:c.98A>C	p.Glu33Ala	p.E33A	ENST00000282397	NM_002019.4	33	gAa/gCa																																																																														
BTK	695	MSKCC	GRCh37	X	100612572	100612572	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	60	565	0	ENST00000308731.7:c.1103-1G>T		p.X368_splice	ENST00000308731	NM_000061.2	368																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	40	219	0				ENST00000310581	NM_198253.2																																																																																
RAF1	5894	MSKCC	GRCh37	3	12647737	12647737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	58	343	0	ENST00000251849.4:c.643C>T	p.Arg215Cys	p.R215C	ENST00000251849	NM_002880.3	215	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	264	730	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870888	12870888	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	86	274	0	ENST00000228872.4:c.115G>T	p.Glu39Ter	p.E39*	ENST00000228872	NM_004064.3	39	Gaa/Taa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67358571	67358571	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	159	459	0	ENST00000327367.4:c.79G>T	p.Glu27Ter	p.E27*	ENST00000327367	NM_005902.3	27	Gag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29664541	29664541	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	241	538	0	ENST00000358273.4:c.6583G>T	p.Glu2195Ter	p.E2195*	ENST00000358273	NM_001042492.2	2195	Gag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29684058	29684058	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	212	540	1	ENST00000358273.4:c.7819G>T	p.Glu2607Ter	p.E2607*	ENST00000358273	NM_001042492.2	2607	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29685577	29685578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGTGCAGAGTGTGGTGTACCATGAAGAATCCCCACCACAATACCAAACATCTTACCTGCAAAG			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	70	554	0	ENST00000358273.4:c.8052_8113+2dup		p.I2684fs	ENST00000358273	NM_001042492.2	2684	att/aTTGTGCAGAGTGTGGTGTACCATGAAGAATCCCCACCACAATACCAAACATCTTACCTGCAAAGtt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763218	59763218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	341	574	0	ENST00000259008.2:c.2884A>G	p.Ile962Val	p.I962V	ENST00000259008	NM_032043.2	962	Att/Gtt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543864	212543864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	134	345	0	ENST00000342788.4:c.1535G>T	p.Cys512Phe	p.C512F	ENST00000342788	NM_005235.2	512	tGt/tTt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5123104	5123104	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	193	505	0	ENST00000381652.3:c.3160A>T	p.Ser1054Cys	p.S1054C	ENST00000381652	NM_004972.3	1054	Agt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971109	21971121	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCACGGGTCGG	GTGCACGGGTCGG	-			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	111	378	0	ENST00000304494.5:c.237_249del	p.Arg80ThrfsTer62	p.R80Tfs*62	ENST00000304494	NM_000077.4	79	acCCGACCCGTGCAC/ac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971109	21971121	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCACGGGTCGG	GTGCACGGGTCGG	-			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	111	378	0	ENST00000304494.5:c.237_249del	p.Arg80ThrfsTer62	p.R80Tfs*62	ENST00000304494	NM_000077.4	79	acCCGACCCGTGCAC/ac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971109	21971121	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCACGGGTCGG	GTGCACGGGTCGG	-			P-0036201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	111	378	0	ENST00000304494.5:c.237_249del	p.Arg80ThrfsTer62	p.R80Tfs*62	ENST00000304494	NM_000077.4	79	acCCGACCCGTGCAC/ac																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	218	641	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	220	516	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085635	16085635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	96	445	0	ENST00000281043.3:c.811G>A	p.Glu271Lys	p.E271K	ENST00000281043	NM_005378.4	271	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41274897	41274897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	266	514	0	ENST00000349496.5:c.1147T>C	p.Trp383Arg	p.W383R	ENST00000349496	NM_001904.3	383	Tgg/Cgg																																																																														
PGR	5241	MSKCC	GRCh37	11	100962530	100962530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	136	555	0	ENST00000325455.5:c.1867C>T	p.Arg623Cys	p.R623C	ENST00000325455	NM_001202474.3	623	Cgc/Tgc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729162	66729162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	299	668	0	ENST00000307102.5:c.370C>T	p.Pro124Ser	p.P124S	ENST00000307102	NM_002755.3	124	Ccg/Tcg																																																																														
KDR	3791	MSKCC	GRCh37	4	55961796	55961796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	90	470	0	ENST00000263923.4:c.2765G>A	p.Gly922Glu	p.G922E	ENST00000263923	NM_002253.2	922	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	124	288	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	124	288	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	124	288	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123247617	123247617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	88	462	0	ENST00000358487.5:c.1874G>A	p.Arg625Gln	p.R625Q	ENST00000358487	NM_000141.4	625	cGa/cAa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246511	41246511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	220	729	0	ENST00000357654.3:c.1037C>T	p.Pro346Leu	p.P346L	ENST00000357654	NM_007294.3	346	cCc/cTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18439842	18439842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	76	366	0	ENST00000266497.5:c.740C>T	p.Ser247Phe	p.S247F	ENST00000266497		247	tCt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	58	231	0				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9858448	9858448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	99	552	0	ENST00000330684.3:c.2953C>T	p.Pro985Ser	p.P985S	ENST00000330684	NM_001134407.1	985	Cct/Tct																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115268938	115268938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	176	450	2	ENST00000438362.2:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000438362	NM_001242891.1	558	Cgt/Tgt																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518368	204518368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	138	473	0	ENST00000367182.3:c.1031C>T	p.Ser344Phe	p.S344F	ENST00000367182	NM_001278516.1	344	tCt/tTt																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871000	12871000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	119	335	0	ENST00000228872.4:c.227G>A	p.Trp76Ter	p.W76*	ENST00000228872	NM_004064.3	76	tGg/tAg																																																																														
MGA	23269	MSKCC	GRCh37	15	42041744	42041744	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	193	417	0	ENST00000219905.7:c.5939A>G	p.Glu1980Gly	p.E1980G	ENST00000219905	NM_001164273.1	1980	gAa/gGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858238	9858238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	115	465	0	ENST00000330684.3:c.3163G>A	p.Glu1055Lys	p.E1055K	ENST00000330684	NM_001134407.1	1055	Gag/Aag																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40451847	40451847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	34	78	0	ENST00000345506.4:c.629C>T	p.Ser210Phe	p.S210F	ENST00000345506	NM_003152.3	210	tCt/tTt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18971186	18971188	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	211	635	0	ENST00000262803.5:c.2243_2245del	p.Phe748del	p.F748del	ENST00000262803	NM_002911.3	747	TTC/-																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546793	9546793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	82	332	0	ENST00000353224.5:c.1229C>T	p.Thr410Ile	p.T410I	ENST00000353224	NM_177990.2	410	aCc/aTc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38958902	38958902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	77	292	0	ENST00000357387.3:c.2210G>A	p.Arg737Lys	p.R737K	ENST00000357387	NM_152756.3	737	aGg/aAg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931459	131931459	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	79	385	0	ENST00000265335.6:c.2164A>G	p.Lys722Glu	p.K722E	ENST00000265335		722	Aag/Gag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674237	117674237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	184	584	0	ENST00000368508.3:c.4237G>A	p.Gly1413Arg	p.G1413R	ENST00000368508	NM_002944.2	1413	Gga/Aga																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069049	5069052	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	49	301	0	ENST00000381652.3:c.1356_1359del	p.Cys452Ter	p.C452*	ENST00000381652	NM_004972.3	452	TGTTtg/tg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376048	8376048	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	106	351	0	ENST00000356435.5:c.4549A>C	p.Thr1517Pro	p.T1517P	ENST00000356435		1517	Acc/Ccc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396293	139396293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	173	738	0	ENST00000277541.6:c.5545G>A	p.Asp1849Asn	p.D1849N	ENST00000277541	NM_017617.3	1849	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	255	252	0				ENST00000310581	NM_198253.2																																																																																
PTEN	5728	MSKCC	GRCh37	10	89692881	89692881	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	358	335	0	ENST00000371953.3:c.365T>A	p.Ile122Asn	p.I122N	ENST00000371953	NM_000314.4	122	aTt/aAt																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175958595	175958595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	330	402	0	ENST00000367669.3:c.1750G>C	p.Asp584His	p.D584H	ENST00000367669	NM_022457.5	584	Gat/Cat																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526447	66526447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	70	500	0	ENST00000358598.2:c.1003C>G	p.Arg335Gly	p.R335G	ENST00000358598	NM_212471.2	335	Cgt/Ggt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295172	1295172	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0036290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	206	144	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	437	598	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	117	352	2				ENST00000310581	NM_198253.2																																																																																
SESN2	83667	MSKCC	GRCh37	1	28605671	28605671	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	102	500	0	ENST00000253063.3:c.1275C>G	p.Ile425Met	p.I425M	ENST00000253063	NM_031459.4	425	atC/atG																																																																														
KDM5A	5927	MSKCC	GRCh37	12	461475	461475	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	59	419	0	ENST00000399788.2:c.1045C>T	p.Arg349Ter	p.R349*	ENST00000399788	NM_001042603.1	349	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281177	15281202	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGCCCTTGTGACCAGAGGCCACGT	CCGGCCCTTGTGACCAGAGGCCACGT	-			P-0036512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	78	752	0	ENST00000263388.2:c.5054_5079del	p.Asp1685AlafsTer18	p.D1685Afs*18	ENST00000263388	NM_000435.2	1685	gACGTGGCCTCTGGTCACAAGGGCCGG/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295176	1295176	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	82	190	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40944512	40944512	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	54	684	0	ENST00000373198.4:c.1990T>G	p.Phe664Val	p.F664V	ENST00000373198	NM_133170.3	664	Ttt/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	136	736	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	96	444	0				ENST00000310581	NM_198253.2																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114903688	114903688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	173	542	0	ENST00000543371.1:c.692C>T	p.Pro231Leu	p.P231L	ENST00000543371	NM_001198531.1	231	cCa/cTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	254	581	0	ENST00000304494.5:c.270C>G	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	254	581	0	ENST00000304494.5:c.270C>G	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	254	581	0	ENST00000304494.5:c.270C>G	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttG																																																																														
PAX5	5079	MSKCC	GRCh37	9	37034025	37034025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	137	396	0	ENST00000358127.4:c.4G>A	p.Asp2Asn	p.D2N	ENST00000358127	NM_001280556.1	2	Gat/Aat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910932	32910932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	64	462	0	ENST00000380152.3:c.2440C>T	p.Pro814Ser	p.P814S	ENST00000380152		814	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434747	49434747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	165	782	0	ENST00000301067.7:c.6806C>T	p.Ser2269Phe	p.S2269F	ENST00000301067	NM_003482.3	2269	tCc/tTc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026709	6026709	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	231	780	1	ENST00000265849.7:c.1687C>T	p.Arg563Ter	p.R563*	ENST00000265849	NM_000535.5	563	Cga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38958620	38958620	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	100	271	1	ENST00000357387.3:c.2345C>T	p.Ala782Val	p.A782V	ENST00000357387	NM_152756.3	782	gCc/gTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720796	89720796	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	45	229	0	ENST00000371953.3:c.947T>C	p.Leu316Pro	p.L316P	ENST00000371953	NM_000314.4	316	cTa/cCa																																																																														
POLE	5426	MSKCC	GRCh37	12	133249229	133249229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	122	632	0	ENST00000320574.5:c.1670C>T	p.Pro557Leu	p.P557L	ENST00000320574	NM_006231.2	557	cCt/cTt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060818	38060818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	148	939	0	ENST00000250448.2:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000250448	NM_004496.3	391	Gac/Aac																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386384	31386384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	159	717	0	ENST00000328111.2:c.1609C>T	p.Arg537Trp	p.R537W	ENST00000328111	NM_006892.3	537	Cgg/Tgg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932600	49932600	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	66	607	0	ENST00000296474.3:c.3271G>A	p.Gly1091Ser	p.G1091S	ENST00000296474	NM_002447.2	1091	Ggc/Agc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21968236	21968236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	242	363	0	ENST00000304494.5:c.463C>G	p.Pro155Ala	p.P155A	ENST00000304494	NM_000077.4	155	Ccc/Gcc																																																																														
TEK	7010	MSKCC	GRCh37	9	27169603	27169603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	157	756	1	ENST00000380036.4:c.604G>A	p.Ala202Thr	p.A202T	ENST00000380036	NM_000459.3	202	Gcc/Acc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409055	139409055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	247	942	2	ENST00000277541.6:c.2114C>T	p.Pro705Leu	p.P705L	ENST00000277541	NM_017617.3	705	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	540	383	0				ENST00000310581	NM_198253.2																																																																																
ATR	545	MSKCC	GRCh37	3	142278101	142278101	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	267	407	0	ENST00000350721.4:c.1724A>G	p.Tyr575Cys	p.Y575C	ENST00000350721	NM_001184.3	575	tAt/tGt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497317	149497317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	184	606	0	ENST00000261799.4:c.3001C>T	p.Pro1001Ser	p.P1001S	ENST00000261799	NM_002609.3	1001	Ccc/Tcc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	255	536	0	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	401	681	0	ENST00000269305.4:c.530C>G	p.Pro177Arg	p.P177R	ENST00000269305	NM_001126112.2	177	cCc/cGc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609925	81609925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	375	356	1	ENST00000298171.2:c.1523C>T	p.Ser508Leu	p.S508L	ENST00000298171	NM_000369.2	508	tCg/tTg																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945093	31945093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	331	650	0	ENST00000340398.3:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000340398	NM_001013699.2	3	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770597	40770597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	252	543	0	ENST00000373198.4:c.2785G>A	p.Asp929Asn	p.D929N	ENST00000373198	NM_133170.3	929	Gat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268059	55268059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	554	758	0	ENST00000275493.2:c.2899G>A	p.Glu967Lys	p.E967K	ENST00000275493	NM_005228.3	967	Gaa/Aaa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523348	9523348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	216	400	0	ENST00000353224.5:c.1889G>A	p.Gly630Glu	p.G630E	ENST00000353224	NM_177990.2	630	gGg/gAg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670813	134670813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	232	467	0	ENST00000398015.3:c.724G>A	p.Gly242Arg	p.G242R	ENST00000398015	NM_004441.4	242	Ggg/Agg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40447674	40447674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	95	617	0	ENST00000345506.4:c.413C>T	p.Ser138Phe	p.S138F	ENST00000345506	NM_003152.3	138	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	323	510	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874636	35874636	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	261	438	2	ENST00000303115.3:c.792G>A	p.Trp264Ter	p.W264*	ENST00000303115	NM_002185.3	264	tgG/tgA																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472522	88472522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55890138		P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	327	617	1	ENST00000360948.2:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000360948	NM_001012338.2	678	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	295	510	1	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39584423	39584423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	223	401	0	ENST00000262039.4:c.1088C>T	p.Ser363Phe	p.S363F	ENST00000262039	NM_002647.2	363	tCc/tTc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367239	50367239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	322	235	0	ENST00000331340.3:c.46G>A	p.Glu16Lys	p.E16K	ENST00000331340	NM_006060.4	16	Gaa/Aaa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058731	180058731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	261	817	0	ENST00000261937.6:c.106G>A	p.Glu36Lys	p.E36K	ENST00000261937	NM_182925.4	36	Gag/Aag																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46511630	46511630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	296	572	0	ENST00000262741.5:c.1147C>T	p.Arg383Cys	p.R383C	ENST00000262741	NM_003629.3	383	Cgt/Tgt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086016	16086016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	49	489	1	ENST00000281043.3:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000281043	NM_005378.4	398	Cgg/Tgg																																																																														
MPL	4352	MSKCC	GRCh37	1	43805735	43805735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	409	688	0	ENST00000372470.3:c.791C>T	p.Ser264Phe	p.S264F	ENST00000372470	NM_005373.2	264	tCc/tTc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	305	555	0	ENST00000286548.4:c.626A>G	p.Gln209Arg	p.Q209R	ENST00000286548	NM_002072.3	209	cAa/cGa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242451	55242451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	214	410	0	ENST00000275493.2:c.2221C>T	p.Pro741Ser	p.P741S	ENST00000275493	NM_005228.3	741	Ccc/Tcc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812196	212812196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	214	343	0	ENST00000342788.4:c.380G>A	p.Gly127Glu	p.G127E	ENST00000342788	NM_005235.2	127	gGa/gAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331724	8331724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	211	369	0	ENST00000356435.5:c.5392C>T	p.Arg1798Ter	p.R1798*	ENST00000356435		1798	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903687	114903687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	263	526	1	ENST00000543371.1:c.691C>T	p.Pro231Ser	p.P231S	ENST00000543371	NM_001198531.1	231	Cca/Tca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860908	151860908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	41	354	1	ENST00000262189.6:c.9754C>T	p.Arg3252Cys	p.R3252C	ENST00000262189	NM_170606.2	3252	Cgt/Tgt																																																																														
TET2	54790	MSKCC	GRCh37	4	106197392	106197392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	165	315	0	ENST00000380013.4:c.5725G>A	p.Glu1909Lys	p.E1909K	ENST00000380013	NM_001127208.2	1909	Gag/Aag																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40447715	40447715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	383	643	1	ENST00000345506.4:c.454C>T	p.Arg152Ter	p.R152*	ENST00000345506	NM_003152.3	152	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984854	9984854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	275	556	0	ENST00000330684.3:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000330684	NM_001134407.1	371	Gaa/Aaa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264782	46264782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	209	427	0	ENST00000371998.3:c.1652C>T	p.Ser551Phe	p.S551F	ENST00000371998		551	tCt/tTt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11308073	11308073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	524	780	0	ENST00000361445.4:c.919G>A	p.Gly307Arg	p.G307R	ENST00000361445	NM_004958.3	307	Gga/Aga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16265351	16265351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	387	650	0	ENST00000375759.3:c.10843C>T	p.Pro3615Ser	p.P3615S	ENST00000375759	NM_015001.2	3615	Ccc/Tcc																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165800	118165800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	245	404	1	ENST00000369448.3:c.310G>A	p.Glu104Lys	p.E104K	ENST00000369448	NM_017709.3	104	Gaa/Aaa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193202130	193202130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	129	261	0	ENST00000367435.3:c.1162C>T	p.Pro388Ser	p.P388S	ENST00000367435	NM_024529.4	388	Cca/Tca																																																																														
TET1	80312	MSKCC	GRCh37	10	70405508	70405508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	60	595	0	ENST00000373644.4:c.3022C>T	p.Pro1008Ser	p.P1008S	ENST00000373644	NM_030625.2	1008	Cca/Tca																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258102	123258102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	230	489	0	ENST00000358487.5:c.1579G>A	p.Asp527Asn	p.D527N	ENST00000358487	NM_000141.4	527	Gac/Aac																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316103	14316103	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	146	300	1	ENST00000256196.4:c.322C>T	p.Gln108Ter	p.Q108*	ENST00000256196		108	Caa/Taa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946982	71946982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	463	865	0	ENST00000298229.2:c.2831C>T	p.Pro944Leu	p.P944L	ENST00000298229	NM_001567.3	944	cCc/cTc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102206760	102206760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	338	508	0	ENST00000263464.3:c.1388C>T	p.Pro463Leu	p.P463L	ENST00000263464	NM_001165.4	463	cCa/cTa																																																																														
ATM	472	MSKCC	GRCh37	11	108165787	108165787	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	167	302	0	ENST00000278616.4:c.4909+1G>C		p.X1637_splice	ENST00000278616	NM_000051.3	1637																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118362557	118362557	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	348	499	0	ENST00000534358.1:c.4918G>T	p.Glu1640Ter	p.E1640*	ENST00000534358	NM_005933.3	1640	Gaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435228	18435228	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	143	304	0	ENST00000266497.5:c.213G>A	p.Trp71Ter	p.W71*	ENST00000266497		71	tgG/tgA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644484	18644484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	218	423	0	ENST00000266497.5:c.2662G>A	p.Asp888Asn	p.D888N	ENST00000266497		888	Gat/Aat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658337	18658337	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	235	536	1	ENST00000266497.5:c.3142T>A	p.Phe1048Ile	p.F1048I	ENST00000266497		1048	Ttt/Att																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944931	31944931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	185	307	0	ENST00000340398.3:c.170C>T	p.Ser57Leu	p.S57L	ENST00000340398	NM_001013699.2	57	tCg/tTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865752	57865752	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144663837		P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	379	719	0	ENST00000228682.2:c.3229C>T	p.Pro1077Ser	p.P1077S	ENST00000228682	NM_005269.2	1077	Ccc/Tcc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120863	115120863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	133	470	0	ENST00000257566.3:c.143C>T	p.Pro48Leu	p.P48L	ENST00000257566	NM_016569.3	48	cCc/cTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669514	88669514	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	321	411	0	ENST00000360948.2:c.1384T>C	p.Phe462Leu	p.F462L	ENST00000360948	NM_001012338.2	462	Ttt/Ctt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3642712	3642712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	249	552	0	ENST00000294008.3:c.2315C>T	p.Ser772Phe	p.S772F	ENST00000294008	NM_032444.2	772	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829439	72829439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	55	634	0	ENST00000268489.5:c.7142C>T	p.Ser2381Phe	p.S2381F	ENST00000268489	NM_006885.3	2381	tCc/tTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832424	72832424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	162	419	0	ENST00000268489.5:c.4157C>T	p.Ala1386Val	p.A1386V	ENST00000268489	NM_006885.3	1386	gCc/gTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992819	72992819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	140	516	0	ENST00000268489.5:c.1226C>T	p.Ser409Leu	p.S409L	ENST00000268489	NM_006885.3	409	tCg/tTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012149	16012149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	344	542	0	ENST00000268712.3:c.2133T>G	p.Asp711Glu	p.D711E	ENST00000268712	NM_006311.3	711	gaT/gaG																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30321596	30321596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	243	455	0	ENST00000322652.5:c.1451G>T	p.Gly484Val	p.G484V	ENST00000322652	NM_015355.2	484	gGt/gTt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40371830	40371830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	473	773	0	ENST00000293328.3:c.581C>T	p.Pro194Leu	p.P194L	ENST00000293328	NM_012448.3	194	cCc/cTc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119795	70119795	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	357	628	0	ENST00000245479.2:c.797C>G	p.Pro266Arg	p.P266R	ENST00000245479	NM_000346.3	266	cCc/cGc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211158	2211158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	393	884	1	ENST00000398665.3:c.1412C>T	p.Ser471Phe	p.S471F	ENST00000398665	NM_032482.2	471	tCc/tTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243912	5243912	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	154	460	0	ENST00000357368.4:c.1570G>A	p.Val524Met	p.V524M	ENST00000357368	NM_002850.3	524	Gtg/Atg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354228	15354229	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	362	881	4	ENST00000263377.2:c.2651_2652delinsTT	p.Pro884Leu	p.P884L	ENST00000263377	NM_058243.2	884	cCC/cTT																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355233	15355233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	326	775	1	ENST00000263377.2:c.2390C>T	p.Pro797Leu	p.P797L	ENST00000263377	NM_058243.2	797	cCc/cTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355362	15355362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	87	572	0	ENST00000263377.2:c.2261C>T	p.Pro754Leu	p.P754L	ENST00000263377	NM_058243.2	754	cCc/cTc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308125	30308126	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	205	600	0	ENST00000262643.3:c.262_263delinsTT	p.Pro88Leu	p.P88L	ENST00000262643	NM_001238.2	88	CCa/TTa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216191	36216191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	349	719	0	ENST00000222270.7:c.3599C>T	p.Pro1200Leu	p.P1200L	ENST00000222270	NM_014727.1	1200	cCc/cTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224755	36224755	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	332	940	0	ENST00000222270.7:c.7141C>T	p.Gln2381Ter	p.Q2381*	ENST00000222270	NM_014727.1	2381	Cag/Tag																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085861	16085861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	194	439	0	ENST00000281043.3:c.1037C>T	p.Pro346Leu	p.P346L	ENST00000281043	NM_005378.4	346	cCa/cTa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158595041	158595041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	234	390	1	ENST00000263640.3:c.1306C>T	p.Pro436Ser	p.P436S	ENST00000263640	NM_001105.4	436	Ccc/Tcc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212568861	212568861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	259	480	0	ENST00000342788.4:c.1257C>A	p.Asn419Lys	p.N419K	ENST00000342788	NM_005235.2	419	aaC/aaA																																																																														
RAC2	5880	MSKCC	GRCh37	22	37637660	37637660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	415	766	1	ENST00000249071.6:c.74C>T	p.Thr25Ile	p.T25I	ENST00000249071	NM_002872.4	25	aCc/aTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41573182	41573182	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2007	252	696	0	ENST00000263253.7:c.5467C>T	p.Gln1823Ter	p.Q1823*	ENST00000263253	NM_001429.3	1823	Cag/Tag																																																																														
EP300	2033	MSKCC	GRCh37	22	41574011	41574011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1606	179	491	0	ENST00000263253.7:c.6296C>T	p.Pro2099Leu	p.P2099L	ENST00000263253	NM_001429.3	2099	cCc/cTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280717	41280717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	332	611	0	ENST00000349496.5:c.2230C>T	p.Pro744Ser	p.P744S	ENST00000349496	NM_001904.3	744	Cct/Tct																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247511	71247511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	267	490	0	ENST00000318789.4:c.22G>A	p.Glu8Lys	p.E8K	ENST00000318789	NM_032682.5	8	Gag/Aag																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72866526	72866526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	171	269	0	ENST00000325599.8:c.737C>T	p.Ser246Phe	p.S246F	ENST00000325599	NM_018130.2	246	tCt/tTt																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204854	128204854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	481	869	0	ENST00000341105.2:c.587C>T	p.Ser196Phe	p.S196F	ENST00000341105	NM_032638.4	196	tCt/tTt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461597	138461597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	259	456	0	ENST00000289153.2:c.424G>A	p.Asp142Asn	p.D142N	ENST00000289153	NM_006219.2	142	Gat/Aat																																																																														
ATR	545	MSKCC	GRCh37	3	142275358	142275358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	238	487	0	ENST00000350721.4:c.1945C>T	p.Leu649Phe	p.L649F	ENST00000350721	NM_001184.3	649	Ctt/Ttt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919282	178919282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	122	221	0	ENST00000263967.3:c.767G>A	p.Gly256Glu	p.G256E	ENST00000263967	NM_006218.2	256	gGa/gAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952063	178952063	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	215	389	0	ENST00000263967.3:c.3118A>C	p.Met1040Leu	p.M1040L	ENST00000263967	NM_006218.2	1040	Atg/Ctg																																																																														
TP63	8626	MSKCC	GRCh37	3	189604203	189604203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	286	517	0	ENST00000264731.3:c.1370C>A	p.Ser457Tyr	p.S457Y	ENST00000264731	NM_003722.4	457	tCt/tAt																																																																														
KDR	3791	MSKCC	GRCh37	4	55946135	55946136	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	172	331	1	ENST00000263923.4:c.4043_4044delinsAA	p.Gly1348Glu	p.G1348E	ENST00000263923	NM_002253.2	1348	gGG/gAA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286281	66286281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	157	367	0	ENST00000273854.3:c.1405C>T	p.Pro469Ser	p.P469S	ENST00000273854	NM_004439.5	469	Cca/Tca																																																																														
TET2	54790	MSKCC	GRCh37	4	106196370	106196370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	103	337	0	ENST00000380013.4:c.4703C>T	p.Pro1568Leu	p.P1568L	ENST00000380013	NM_001127208.2	1568	cCa/cTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524527	187524527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	687	706	0	ENST00000441802.2:c.11153C>T	p.Ser3718Phe	p.S3718F	ENST00000441802	NM_005245.3	3718	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1264687	1264687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1403	271	744	0	ENST00000310581.5:c.2675C>T	p.Pro892Leu	p.P892L	ENST00000310581	NM_198253.2	892	cCt/cTt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149453057	149453057	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	170	334	0	ENST00000286301.3:c.890-1G>A		p.X297_splice	ENST00000286301	NM_005211.3	297																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149500461	149500461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	293	542	0	ENST00000261799.4:c.2576C>T	p.Ser859Phe	p.S859F	ENST00000261799	NM_002609.3	859	tCc/tTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522570	176522570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	279	725	0	ENST00000292408.4:c.1667G>A	p.Gly556Glu	p.G556E	ENST00000292408	NM_213647.1	556	gGa/gAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043479	180043479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	225	593	0	ENST00000261937.6:c.3107G>A	p.Arg1036Lys	p.R1036K	ENST00000261937	NM_182925.4	1036	aGa/aAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048892	180048892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	84	955	0	ENST00000261937.6:c.1670G>A	p.Gly557Asp	p.G557D	ENST00000261937	NM_182925.4	557	gGc/gAc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956652	93956652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	254	470	0	ENST00000369303.4:c.2584C>T	p.Pro862Ser	p.P862S	ENST00000369303	NM_004440.3	862	Cca/Tca																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120505	94120505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	52	420	0	ENST00000369303.4:c.546C>G	p.Phe182Leu	p.F182L	ENST00000369303	NM_004440.3	182	ttC/ttG																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968322	2968322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	855	697	0	ENST00000396946.4:c.1664G>A	p.Arg555Gln	p.R555Q	ENST00000396946	NM_032415.4	555	cGg/cAg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026897	6026897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	270	323	0	ENST00000265849.7:c.1499C>T	p.Ser500Phe	p.S500F	ENST00000265849	NM_000535.5	500	tCc/tTc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444480	50444480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	144	286	0	ENST00000331340.3:c.410G>A	p.Arg137Lys	p.R137K	ENST00000331340	NM_006060.4	137	aGa/aAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151856028	151856028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144222590		P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	366	564	0	ENST00000262189.6:c.11590C>T	p.Arg3864Cys	p.R3864C	ENST00000262189	NM_170606.2	3864	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152009020	152009020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	63	371	0	ENST00000262189.6:c.602C>T	p.Pro201Leu	p.P201L	ENST00000262189	NM_170606.2	201	cCt/cTt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370834	55370834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	311	635	0	ENST00000297316.4:c.136G>A	p.Gly46Ser	p.G46S	ENST00000297316	NM_022454.3	46	Ggc/Agc																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127923143	127923143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	53	539	0	ENST00000373547.4:c.214C>T	p.Pro72Ser	p.P72S	ENST00000373547	NM_002721.4	72	Cct/Tct																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314956	1314956	+	downstream_gene_variant	3'Flank	SNP	A	A	C			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	337	564	0				ENST00000381566																																																																																	
BCOR	54880	MSKCC	GRCh37	X	39932309	39932309	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	615	499	0	ENST00000378444.4:c.2290T>C	p.Phe764Leu	p.F764L	ENST00000378444	NM_001123385.1	764	Ttt/Ctt																																																																														
BTK	695	MSKCC	GRCh37	X	100611096	100611096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	388	353	0	ENST00000308731.7:c.1510G>A	p.Asp504Asn	p.D504N	ENST00000308731	NM_000061.2	504	Gat/Aat																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504162	123504162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	61	247	0	ENST00000371139.4:c.338G>A	p.Gly113Asp	p.G113D	ENST00000371139	NM_001114937.2	113	gGt/gAt																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152860061	152860061	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	198	358	0	ENST00000406277.2:c.367G>T	p.Glu123Ter	p.E123*	ENST00000406277	NM_152274.4	123	Gag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	178	340	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0037116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	78	430	0				ENST00000310581	NM_198253.2																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101904821	101904821	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	95	319	0	ENST00000374994.4:c.809A>T	p.Asn270Ile	p.N270I	ENST00000374994	NM_004612.2	270	aAt/aTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133219242	133219242	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	147	711	0	ENST00000320574.5:c.4802C>G	p.Pro1601Arg	p.P1601R	ENST00000320574	NM_006231.2	1601	cCt/cGt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980810	40980810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	144	599	0	ENST00000373198.4:c.1676G>A	p.Gly559Glu	p.G559E	ENST00000373198	NM_133170.3	559	gGg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971161	21971162	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAGCA			P-0037116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	77	511	0	ENST00000304494.5:c.191_196dup	p.Leu64_Leu65dup	p.L64_L65dup	ENST00000304494	NM_000077.4	64	cac/cTGCTCCac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971161	21971162	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAGCA			P-0037116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	77	511	0	ENST00000304494.5:c.191_196dup	p.Leu64_Leu65dup	p.L64_L65dup	ENST00000304494	NM_000077.4	64	cac/cTGCTCCac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971161	21971162	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAGCA			P-0037116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	77	511	0	ENST00000304494.5:c.191_196dup	p.Leu64_Leu65dup	p.L64_L65dup	ENST00000304494	NM_000077.4	64	cac/cTGCTCCac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	102	411	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	102	411	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	52	616	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	104	596	1	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
NPM1	4869	MSKCC	GRCh37	5	170837530	170837530	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	16	110	0	ENST00000296930.5:c.847-1G>T		p.X283_splice	ENST00000296930	NM_002520.6	283																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	198	336	0				ENST00000310581	NM_198253.2																																																																																
ERBB3	2065	MSKCC	GRCh37	12	56488228	56488228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	99	514	0	ENST00000267101.3:c.1747C>T	p.Pro583Ser	p.P583S	ENST00000267101	NM_001982.3	583	Ccc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	67	373	0	ENST00000288602.6:c.1391G>A	p.Gly464Glu	p.G464E	ENST00000288602	NM_004333.4	464	gGa/gAa																																																																														
MPL	4352	MSKCC	GRCh37	1	43812261	43812261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	39	484	0	ENST00000372470.3:c.1126C>T	p.His376Tyr	p.H376Y	ENST00000372470	NM_005373.2	376	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	102	411	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739837	41739837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	79	438	0	ENST00000242208.4:c.136G>A	p.Asp46Asn	p.D46N	ENST00000242208	NM_002192.2	46	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577527	7577527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	123	625	0	ENST00000269305.4:c.754C>T	p.Leu252Phe	p.L252F	ENST00000269305	NM_001126112.2	252	Ctc/Ttc																																																																														
HGF	3082	MSKCC	GRCh37	7	81355233	81355233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	54	265	0	ENST00000222390.5:c.1141C>T	p.Pro381Ser	p.P381S	ENST00000222390	NM_000601.4	381	Cca/Tca																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418372	139418372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	119	725	0	ENST00000277541.6:c.200C>T	p.Pro67Leu	p.P67L	ENST00000277541	NM_017617.3	67	cCc/cTc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502444	186502444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	81	344	0	ENST00000323963.5:c.167C>T	p.Pro56Leu	p.P56L	ENST00000323963		56	cCt/cTt																																																																														
CIC	23152	MSKCC	GRCh37	19	42794728	42794728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	47	620	0	ENST00000575354.2:c.1808C>T	p.Pro603Leu	p.P603L	ENST00000575354	NM_015125.3	603	cCc/cTc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14038684	14038684	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56129764		P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	60	211	1	ENST00000311895.7:c.2009G>A	p.Arg670Gln	p.R670Q	ENST00000311895	NM_005236.2	670	cGg/cAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965749	93965749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	28	199	0	ENST00000369303.4:c.2179G>A	p.Asp727Asn	p.D727N	ENST00000369303	NM_004440.3	727	Gat/Aat																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644720	134644720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	94	405	0	ENST00000398015.3:c.121G>A	p.Gly41Arg	p.G41R	ENST00000398015	NM_004441.4	41	Ggg/Agg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16235913	16235913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	45	415	0	ENST00000375759.3:c.979G>A	p.Glu327Lys	p.E327K	ENST00000375759	NM_015001.2	327	Gaa/Aaa																																																																														
MDM4	4194	MSKCC	GRCh37	1	204515974	204515974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	54	237	0	ENST00000367182.3:c.872G>A	p.Ser291Asn	p.S291N	ENST00000367182	NM_001278516.1	291	aGt/aAt																																																																														
TET1	80312	MSKCC	GRCh37	10	70332118	70332118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	12	156	0	ENST00000373644.4:c.23G>A	p.Arg8Lys	p.R8K	ENST00000373644	NM_030625.2	8	aGg/aAg																																																																														
RECQL	5965	MSKCC	GRCh37	12	21630824	21630824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	77	441	0	ENST00000421138.2:c.780C>A	p.His260Gln	p.H260Q	ENST00000421138		260	caC/caA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434022	49434022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	68	633	0	ENST00000301067.7:c.7531C>T	p.Pro2511Ser	p.P2511S	ENST00000301067	NM_003482.3	2511	Cca/Tca																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	88	467	0	ENST00000267101.3:c.2537G>A	p.Ser846Asn	p.S846N	ENST00000267101	NM_001982.3	846	aGt/aAt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435838	110435838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	48	435	0	ENST00000375856.3:c.2563G>A	p.Gly855Arg	p.G855R	ENST00000375856	NM_003749.2	855	Ggg/Agg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708503	43708504	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	91	646	1	ENST00000382044.4:c.4792_4793delinsAA	p.Gly1598Lys	p.G1598K	ENST00000382044	NM_001141980.1	1598	GGa/AAa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210482	5210483	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	63	479	0	ENST00000357368.4:c.5484_5485delinsTT	p.Arg1829Trp	p.R1829W	ENST00000357368	NM_002850.3	1828	gcCCgg/gcTTgg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354182	15354182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	78	638	0	ENST00000263377.2:c.2698C>T	p.Leu900Phe	p.L900F	ENST00000263377	NM_058243.2	900	Ctc/Ttc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982400	25982400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	60	285	0	ENST00000435504.4:c.890G>A	p.Gly297Glu	p.G297E	ENST00000435504		297	gGa/gAa																																																																														
ALK	238	MSKCC	GRCh37	2	29462566	29462566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	74	538	0	ENST00000389048.3:c.2335G>A	p.Gly779Arg	p.G779R	ENST00000389048	NM_004304.4	779	Gga/Aga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212615376	212615376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	29	364	0	ENST00000342788.4:c.610C>T	p.His204Tyr	p.H204Y	ENST00000342788	NM_005235.2	204	Cat/Tat																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22153418	22153418	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	52	252	0	ENST00000215832.6:c.493-1G>A		p.X165_splice	ENST00000215832	NM_002745.4	165																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165139	47165140	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	36	296	0	ENST00000409792.3:c.986_987delinsAA	p.Arg329Gln	p.R329Q	ENST00000409792	NM_014159.6	329	cGG/cAA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917544	178917544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	63	345	0	ENST00000263967.3:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000263967	NM_006218.2	140	cGa/cAa																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750474	41750474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	54	404	0	ENST00000226382.2:c.154G>A	p.Gly52Arg	p.G52R	ENST00000226382	NM_003924.3	52	Ggg/Agg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521192	187521192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	90	565	1	ENST00000441802.2:c.11963C>T	p.Pro3988Leu	p.P3988L	ENST00000441802	NM_005245.3	3988	cCt/cTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628142	187628142	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	94	579	1	ENST00000441802.2:c.2840del	p.Met947SerfsTer3	p.M947Sfs*3	ENST00000441802	NM_005245.3	947	aTg/ag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189403	56189403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	100	568	0	ENST00000399503.3:c.4435C>T	p.Pro1479Ser	p.P1479S	ENST00000399503	NM_005921.1	1479	Cct/Tct																																																																														
NSD1	64324	MSKCC	GRCh37	5	176715886	176715886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	72	445	0	ENST00000439151.2:c.6218G>T	p.Gly2073Val	p.G2073V	ENST00000439151	NM_022455.4	2073	gGa/gTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672253	30672253	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	63	666	0	ENST00000376406.3:c.4707A>C	p.Glu1569Asp	p.E1569D	ENST00000376406	NM_014641.2	1569	gaA/gaC																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955164	93955164	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	34	347	0	ENST00000369303.4:c.2734A>G	p.Ser912Gly	p.S912G	ENST00000369303	NM_004440.3	912	Agc/Ggc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138198343	138198344	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	50	282	1	ENST00000237289.4:c.936_937delinsTT	p.Pro313Ser	p.P313S	ENST00000237289	NM_001270507.1	312	atCCcc/atTTcc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148514974	148514974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	82	355	0	ENST00000320356.2:c.1235C>T	p.Ser412Phe	p.S412F	ENST00000320356	NM_004456.4	412	tCc/tTc																																																																														
TEK	7010	MSKCC	GRCh37	9	27218799	27218800	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	83	566	2	ENST00000380036.4:c.3087_3088delinsAA	p.Trp1029_Glu1030delinsTer	p.W1029_E1030delins*	ENST00000380036	NM_000459.3	1029	tgGGag/tgAAag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412312	139412312	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	51	649	0	ENST00000277541.6:c.1333A>C	p.Thr445Pro	p.T445P	ENST00000277541	NM_017617.3	445	Acg/Ccg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228328	53228329	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	43	499	0	ENST00000375401.3:c.2073_2074delinsAA	p.Ala692Thr	p.A692T	ENST00000375401	NM_004187.3	691	gaGGct/gaAAct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	40	142	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	58	219	1	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	58	219	1	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	58	219	1	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0037516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	46	199	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546643	9546643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	51	374	1	ENST00000353224.5:c.1379C>T	p.Thr460Ile	p.T460I	ENST00000353224	NM_177990.2	460	aCc/aTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	106	332	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	106	332	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	106	332	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42003136	42003137	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	31	588	0	ENST00000219905.7:c.2678dup	p.Val894CysfsTer19	p.V894Cfs*19	ENST00000219905	NM_001164273.1	891	-/C																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	73	187	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577971	7578178	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCT	CCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCT	-			P-0037808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	83	91	0	ENST00000269305.4:c.671_672+206del		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139409073	139409074	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATT			P-0037808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	141	862	0	ENST00000277541.6:c.2092_2095dup	p.Gly699GlufsTer19	p.G699Efs*19	ENST00000277541	NM_017617.3	699	ggc/gAATGgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	66	349	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	86	416	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	86	416	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	100	501	1	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			9	37	271	0	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321372	1321372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	71	456	1	ENST00000381566.1:c.383C>T	p.Ser128Leu	p.S128L	ENST00000381566		128	tCg/tTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	86	416	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281660	49281660	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61735175		P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	70	601	1	ENST00000282018.3:c.707C>T	p.Ser236Leu	p.S236L	ENST00000282018	NM_020377.2	236	tCg/tTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995569	68995569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	46	430	1	ENST00000288368.4:c.1973C>T	p.Ser658Leu	p.S658L	ENST00000288368	NM_024870.2	658	tCg/tTg																																																																														
TEK	7010	MSKCC	GRCh37	9	27169552	27169552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	60	539	0	ENST00000380036.4:c.553G>A	p.Asp185Asn	p.D185N	ENST00000380036	NM_000459.3	185	Gat/Aat																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970945	70970945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	209	574	2	ENST00000276594.2:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000276594	NM_024504.3	439	cGa/cAa																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47606921	47606921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	24	266	0	ENST00000263735.4:c.671C>T	p.Ser224Phe	p.S224F	ENST00000263735	NM_002354.2	224	tCc/tTc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526781	31526781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	50	521	0	ENST00000344624.3:c.259C>T	p.Pro87Ser	p.P87S	ENST00000344624		87	Ccg/Tcg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31468137	31468137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	49	450	1	ENST00000344624.3:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000344624		759	Cgt/Tgt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117700292	117700292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	27	374	0	ENST00000368508.3:c.2527G>A	p.Gly843Arg	p.G843R	ENST00000368508	NM_002944.2	843	Ggg/Agg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846208	156846208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	74	583	0	ENST00000524377.1:c.1649C>T	p.Ser550Phe	p.S550F	ENST00000524377	NM_002529.3	550	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118380792	118380792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	22	256	0	ENST00000534358.1:c.11030C>T	p.Ser3677Phe	p.S3677F	ENST00000534358	NM_005933.3	3677	tCc/tTc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549165	21549165	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	52	642	1	ENST00000382592.4:c.3111T>A	p.Phe1037Leu	p.F1037L	ENST00000382592	NM_014572.2	1037	ttT/ttA																																																																														
NF1	4763	MSKCC	GRCh37	17	29586021	29586072	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTATTTATAACCCTGTTTTATTGTGTAGATACTTCAGAGTATTGCCAATCA	ATTATTTATAACCCTGTTTTATTGTGTAGATACTTCAGAGTATTGCCAATCA	-			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	14	163	0	ENST00000358273.4:c.4333-29_4355del		p.X1445_splice	ENST00000358273	NM_001042492.2	1445																																																																															
NF1	4763	MSKCC	GRCh37	17	29586057	29586057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	10	221	0	ENST00000358273.4:c.4340A>G	p.Gln1447Arg	p.Q1447R	ENST00000358273	NM_001042492.2	1447	cAg/cGg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11031207	11031208	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	86	633	1	ENST00000327064.4:c.1292_1293delinsAA	p.Gly431Glu	p.G431E	ENST00000327064	NM_199141.1	431	gGG/gAA																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213263	39213263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	71	626	0	ENST00000402219.2:c.3704C>T	p.Pro1235Leu	p.P1235L	ENST00000402219	NM_005633.3	1235	cCt/cTt																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872458	136872458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	14	179	0	ENST00000241393.3:c.1040C>T	p.Ser347Leu	p.S347L	ENST00000241393	NM_003467.2	347	tCa/tTa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31016164	31016164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	45	354	0	ENST00000375687.4:c.410C>G	p.Ser137Cys	p.S137C	ENST00000375687	NM_015338.5	137	tCt/tGt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12475551	12475552	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	55	413	1	ENST00000287820.6:c.1425_1426delinsAA	p.Glu476Lys	p.E476K	ENST00000287820	NM_015869.4	475	acGGaa/acAAaa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729971	30729972	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	30	294	0	ENST00000359013.4:c.1567_1568delinsTT	p.Pro523Leu	p.P523L	ENST00000359013	NM_001024847.2	523	CCa/TTa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191131	185191131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	42	443	0	ENST00000265026.3:c.2012G>A	p.Arg671Lys	p.R671K	ENST00000265026	NM_004721.4	671	aGg/aAg																																																																														
KDR	3791	MSKCC	GRCh37	4	55974015	55974015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	18	435	0	ENST00000263923.4:c.1301C>T	p.Ser434Phe	p.S434F	ENST00000263923	NM_002253.2	434	tCc/tTc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322439	31322439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	56	360	0	ENST00000412585.2:c.1016G>A	p.Gly339Glu	p.G339E	ENST00000412585	NM_005514.6	339	gGa/gAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166857	32166857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	108	669	0	ENST00000375023.3:c.4381G>A	p.Ala1461Thr	p.A1461T	ENST00000375023	NM_004557.3	1461	Gcc/Acc																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540158	23540158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	59	303	0	ENST00000380871.4:c.245C>T	p.Ala82Val	p.A82V	ENST00000380871	NM_006167.3	82	gCc/gTc																																																																														
TEK	7010	MSKCC	GRCh37	9	27173333	27173333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	51	506	0	ENST00000380036.4:c.874G>A	p.Gly292Ser	p.G292S	ENST00000380036	NM_000459.3	292	Ggc/Agc																																																																														
MED12	9968	MSKCC	GRCh37	X	70356227	70356227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	102	661	0	ENST00000374080.3:c.5122G>A	p.Val1708Ile	p.V1708I	ENST00000374080		1708	Gtc/Atc																																																																														
ATRX	546	MSKCC	GRCh37	X	76776313	76776313	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	29	476	0	ENST00000373344.5:c.7153A>G	p.Lys2385Glu	p.K2385E	ENST00000373344	NM_000489.3	2385	Aaa/Gaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	109	222	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	750	745	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48934152	48934152	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	89	256	0	ENST00000267163.4:c.608-1G>A		p.X203_splice	ENST00000267163	NM_000321.2	203																																																																															
HIST1H3D	8351	MSKCC	GRCh37	6	26197400	26197400	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	127	331	0	ENST00000356476.2:c.79C>T	p.Arg27Ter	p.R27*	ENST00000356476		27	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087386	27087386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	231	566	0	ENST00000324856.7:c.1960G>A	p.Glu654Lys	p.E654K	ENST00000324856	NM_006015.4	654	Gaa/Aaa																																																																														
RIT1	6016	MSKCC	GRCh37	1	155880537	155880537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	215	560	0	ENST00000368323.3:c.16C>G	p.Arg6Gly	p.R6G	ENST00000368323	NM_006912.5	6	Cgc/Ggc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440574	49440581	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTGGGGCA	CTGGGGCA	TTGGGCC			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	114	603	1	ENST00000301067.7:c.4237-8_4237-1delinsGGCCCAA		p.X1413_splice	ENST00000301067	NM_003482.3	1413																																																																															
RAD51	5888	MSKCC	GRCh37	15	41011040	41011040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	272	574	0	ENST00000267868.3:c.473T>A	p.Met158Lys	p.M158K	ENST00000267868	NM_002875.4	158	aTg/aAg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639843	3639843	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	81	589	0	ENST00000294008.3:c.3796A>G	p.Ser1266Gly	p.S1266G	ENST00000294008	NM_032444.2	1266	Agc/Ggc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984770	72984770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	84	603	0	ENST00000268489.5:c.2814C>A	p.Asn938Lys	p.N938K	ENST00000268489	NM_006885.3	938	aaC/aaA																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885974	59885974	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	120	413	0	ENST00000259008.2:c.772C>T	p.Gln258Ter	p.Q258*	ENST00000259008	NM_032043.2	258	Cag/Tag																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73774966	73774966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	86	305	0	ENST00000254810.4:c.207G>C	p.Gln69His	p.Q69H	ENST00000254810	NM_005324.3	69	caG/caC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604632	48604632	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	95	225	0	ENST00000342988.3:c.1454C>G	p.Ser485Ter	p.S485*	ENST00000342988	NM_005359.5	485	tCa/tGa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906835	50906835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	302	549	0	ENST00000440232.2:c.1223C>T	p.Ser408Phe	p.S408F	ENST00000440232	NM_002691.3	408	tCt/tTt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25990551	25990551	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	202	438	0	ENST00000435504.4:c.676C>T	p.Gln226Ter	p.Q226*	ENST00000435504		226	Caa/Taa																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309886	30309886	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	203	530	0	ENST00000307677.4:c.136G>C	p.Glu46Gln	p.E46Q	ENST00000307677	NM_138578.1	46	Gag/Cag																																																																														
RHOA	387	MSKCC	GRCh37	3	49405870	49405870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	210	482	0	ENST00000418115.1:c.268G>T	p.Asp90Tyr	p.D90Y	ENST00000418115	NM_001664.2	90	Gat/Tat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31464356	31464356	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1559205		P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	247	594	0	ENST00000344624.3:c.2561C>T	p.Ser854Phe	p.S854F	ENST00000344624		854	tCt/tTt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562826	176562826	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	244	468	0	ENST00000439151.2:c.722G>C	p.Arg241Thr	p.R241T	ENST00000439151	NM_022455.4	241	aGa/aCa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737811	145737811	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	311	696	0	ENST00000428558.2:c.3019C>G	p.Leu1007Val	p.L1007V	ENST00000428558	NM_004260.3	1007	Ctc/Gtc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741138	145741164	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATGTCTCACCTGGCCGGGGACACTGG	GATGTCTCACCTGGCCGGGGACACTGG	-			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	249	437	0	ENST00000428558.2:c.1242_1258+10del		p.X414_splice	ENST00000428558	NM_004260.3	414																																																																															
SYK	6850	MSKCC	GRCh37	9	93640057	93640057	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	57	216	0	ENST00000375746.1:c.1386G>C	p.Gln462His	p.Q462H	ENST00000375746	NM_001174167.1	462	caG/caC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	93	90	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	48954181	48954261	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTTTCAGGAAGAAGAACGATTATCCATTCAAAATTTTAGGTAAATTTTTTACTTTTAGTAAAAAATTTTTTTCTTTTTAT	TGTTTCAGGAAGAAGAACGATTATCCATTCAAAATTTTAGGTAAATTTTTTACTTTTAGTAAAAAATTTTTTTCTTTTTAT	-			P-0038316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	66	233	0	ENST00000267163.4:c.1390-8_1422-40del		p.X464_splice	ENST00000267163	NM_000321.2	464																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	130	179	2				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	294	413	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	147	499	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
AXL	558	MSKCC	GRCh37	19	41749547	41749547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	372	536	0	ENST00000301178.4:c.1472G>C	p.Arg491Thr	p.R491T	ENST00000301178	NM_021913.4	491	aGa/aCa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6048638	6048638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	278	597	0	ENST00000265849.7:c.13G>A	p.Glu5Lys	p.E5K	ENST00000265849	NM_000535.5	5	Gag/Aag																																																																														
ATR	545	MSKCC	GRCh37	3	142275399	142275399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202162034		P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	80	348	1	ENST00000350721.4:c.1904G>A	p.Arg635Gln	p.R635Q	ENST00000350721	NM_001184.3	635	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108160488	108160488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	262	437	0	ENST00000278616.4:c.4396C>T	p.Arg1466Ter	p.R1466*	ENST00000278616	NM_000051.3	1466	Cga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010560	48010560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	133	259	0	ENST00000234420.5:c.188C>G	p.Ser63Cys	p.S63C	ENST00000234420	NM_000179.2	63	tCc/tGc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478902	56478902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	2036	725	0	ENST00000267101.3:c.358A>G	p.Met120Val	p.M120V	ENST00000267101	NM_001982.3	120	Atg/Gtg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412634	63412634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	152	297	0	ENST00000330258.3:c.533G>A	p.Arg178His	p.R178H	ENST00000330258	NM_152424.3	178	cGt/cAt																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439718	51439718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	104	337	0	ENST00000262662.1:c.283G>A	p.Asp95Asn	p.D95N	ENST00000262662		95	Gat/Aat																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112771504	112771504	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	264	463	0	ENST00000369452.4:c.1677G>C	p.Gln559His	p.Q559H	ENST00000369452	NM_007373.3	559	caG/caC																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211548	46211548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	48	275	2	ENST00000334344.6:c.514G>A	p.Glu172Lys	p.E172K	ENST00000334344	NM_152641.2	172	Gaa/Aaa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26971342	26971342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	41	281	0	ENST00000381527.3:c.913G>C	p.Asp305His	p.D305H	ENST00000381527	NM_001260.1	305	Gat/Cat																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701248	43701248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	114	494	0	ENST00000382044.4:c.5447G>A	p.Arg1816Gln	p.R1816Q	ENST00000382044	NM_001141980.1	1816	cGa/cAa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50818257	50818257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	233	310	0	ENST00000398568.2:c.1835C>G	p.Ser612Cys	p.S612C	ENST00000398568	NM_001042412.1	612	tCt/tGt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78599493	78599493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	355	439	0	ENST00000306801.3:c.165G>A	p.Met55Ile	p.M55I	ENST00000306801	NM_020761.2	55	atG/atA																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372117	45372117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	116	537	0	ENST00000262160.6:c.1052G>C	p.Ser351Thr	p.S351T	ENST00000262160	NM_005901.5	351	aGt/aCt																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110624	4110624	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	169	643	0	ENST00000262948.5:c.333C>G	p.Ile111Met	p.I111M	ENST00000262948	NM_030662.3	111	atC/atG																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45871990	45871990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	309	536	0	ENST00000391945.4:c.258G>C	p.Glu86Asp	p.E86D	ENST00000391945	NM_000400.3	86	gaG/gaC																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660333	227660333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	42	477	0	ENST00000305123.5:c.3122C>T	p.Ser1041Phe	p.S1041F	ENST00000305123	NM_005544.2	1041	tCt/tTt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185184618	185184618	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	86	305	0	ENST00000265026.3:c.1510G>C	p.Glu504Gln	p.E504Q	ENST00000265026	NM_004721.4	504	Gag/Cag																																																																														
KDR	3791	MSKCC	GRCh37	4	55955887	55955887	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	112	386	0	ENST00000263923.4:c.3275G>C	p.Gly1092Ala	p.G1092A	ENST00000263923	NM_002253.2	1092	gGt/gCt																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032230	26032230	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	56	341	0	ENST00000244661.2:c.59A>C	p.Gln20Pro	p.Q20P	ENST00000244661	NM_003537.3	20	cAg/cCg																																																																														
MET	4233	MSKCC	GRCh37	7	116412064	116412064	+	intron_variant	Intron	SNP	C	C	G			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	156	687	0	ENST00000397752.3:c.3028+21C>G		p.*1010*	ENST00000397752	NM_000245.2																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139418227	139418228	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	445	809	1	ENST00000277541.6:c.344dup	p.Thr116HisfsTer27	p.T116Hfs*27	ENST00000277541	NM_017617.3	115	ggc/ggGc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156480	106156480	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	220	408	0	ENST00000380013.4:c.1381C>T	p.Gln461Ter	p.Q461*	ENST00000380013	NM_001127208.2	461	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717678	89717678	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	683	466	0	ENST00000371953.3:c.703G>T	p.Glu235Ter	p.E235*	ENST00000371953	NM_000314.4	235	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29550494	29550497	+	frameshift_variant	Frame_Shift_Del	DEL	TAAC	TAAC	-			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	164	262	0	ENST00000358273.4:c.1756_1759del	p.Thr586ValfsTer18	p.T586Vfs*18	ENST00000358273	NM_001042492.2	585	tTAACt/tt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411831	63411831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	350	364	0	ENST00000330258.3:c.1336C>T	p.Pro446Ser	p.P446S	ENST00000330258	NM_152424.3	446	Cct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29686022	29686022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	176	324	0	ENST00000358273.4:c.8149C>T	p.Pro2717Ser	p.P2717S	ENST00000358273	NM_001042492.2	2717	Ccg/Tcg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790000	40790000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	197	500	0	ENST00000373198.4:c.2731G>A	p.Glu911Lys	p.E911K	ENST00000373198	NM_133170.3	911	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638338	117638338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	196	382	0	ENST00000368508.3:c.6103C>T	p.Leu2035Phe	p.L2035F	ENST00000368508	NM_002944.2	2035	Ctt/Ttt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868605	37868605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	287	447	0	ENST00000269571.5:c.1052G>A	p.Arg351Gln	p.R351Q	ENST00000269571		351	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076955	41076955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs724159838		P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	215	459	1	ENST00000373198.4:c.1465C>T	p.Pro489Ser	p.P489S	ENST00000373198	NM_133170.3	489	Cct/Tct																																																																														
EZH1	2145	MSKCC	GRCh37	17	40864381	40864381	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	374	694	0	ENST00000428826.2:c.1327C>T	p.Arg443Ter	p.R443*	ENST00000428826		443	Cga/Tga																																																																														
FLT1	2321	MSKCC	GRCh37	13	28880827	28880827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	229	520	1	ENST00000282397.4:c.3803C>T	p.Ser1268Leu	p.S1268L	ENST00000282397	NM_002019.4	1268	tCg/tTg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379868	17379868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	433	681	1	ENST00000359435.4:c.253C>T	p.Arg85Trp	p.R85W	ENST00000359435	NM_001033549.1	85	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	180	355	0				ENST00000310581	NM_198253.2																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8500885	8500885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	226	514	0	ENST00000356435.5:c.1997C>T	p.Pro666Leu	p.P666L	ENST00000356435		666	cCt/cTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435662	18435662	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	153	278	0	ENST00000266497.5:c.647T>G	p.Met216Arg	p.M216R	ENST00000266497		216	aTg/aGg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691157	18691157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	209	403	0	ENST00000266497.5:c.3268C>A	p.Gln1090Lys	p.Q1090K	ENST00000266497		1090	Cag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476390	88476390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	167	462	0	ENST00000360948.2:c.1742C>T	p.Ala581Val	p.A581V	ENST00000360948	NM_001012338.2	581	gCc/gTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678470	88678470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	257	615	0	ENST00000360948.2:c.1066G>A	p.Gly356Arg	p.G356R	ENST00000360948	NM_001012338.2	356	Gga/Aga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2122953	2122953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	312	592	1	ENST00000219476.3:c.2324C>T	p.Ser775Phe	p.S775F	ENST00000219476	NM_000548.3	775	tCt/tTt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2218126	2218126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	777	703	0	ENST00000326181.6:c.188C>T	p.Ser63Phe	p.S63F	ENST00000326181	NM_032271.2	63	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858619	9858619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	231	492	0	ENST00000330684.3:c.2782G>A	p.Gly928Ser	p.G928S	ENST00000330684	NM_001134407.1	928	Ggt/Agt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032387	10032387	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	166	385	0	ENST00000330684.3:c.436C>T	p.Gln146Ter	p.Q146*	ENST00000330684	NM_001134407.1	146	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29482978	29483036	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTTTTTTCTTTTTTTTTCAGCTTCCAATAAAAACAGGACAGCAGAACACACATACC	TTTTTTTTTTCTTTTTTTTTCAGCTTCCAATAAAAACAGGACAGCAGAACACACATACC	-			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	159	205	0	ENST00000358273.4:c.61-23_96del		p.X21_splice	ENST00000358273	NM_001042492.2	21																																																																															
ERF	2077	MSKCC	GRCh37	19	42753491	42753491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	487	712	0	ENST00000222329.4:c.773C>T	p.Ser258Phe	p.S258F	ENST00000222329	NM_006494.2	258	tCc/tTc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249743	39249743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	281	423	0	ENST00000402219.2:c.1826T>C	p.Leu609Pro	p.L609P	ENST00000402219	NM_005633.3	609	cTt/cCt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421260	12421260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	499	556	2	ENST00000287820.6:c.140C>T	p.Ser47Phe	p.S47F	ENST00000287820	NM_015869.4	47	tCc/tTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499367	89499367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	233	398	1	ENST00000336596.2:c.2537C>T	p.Pro846Leu	p.P846L	ENST00000336596	NM_005233.5	846	cCc/cTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189582096	189582096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	244	467	0	ENST00000264731.3:c.655C>G	p.Pro219Ala	p.P219A	ENST00000264731	NM_003722.4	219	Cct/Gct																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1957774	1957774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	348	602	2	ENST00000382891.5:c.2740G>A	p.Glu914Lys	p.E914K	ENST00000382891	NM_133335.3	914	Gag/Aag																																																																														
TET2	54790	MSKCC	GRCh37	4	106156043	106156043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	181	333	0	ENST00000380013.4:c.944C>T	p.Ser315Phe	p.S315F	ENST00000380013	NM_001127208.2	315	tCc/tTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520447	176520447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	339	640	1	ENST00000292408.4:c.1292C>T	p.Ser431Phe	p.S431F	ENST00000292408	NM_213647.1	431	tCc/tTc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402692	20402692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1343489714		P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	210	388	2	ENST00000346618.3:c.229G>A	p.Gly77Ser	p.G77S	ENST00000346618	NM_001949.4	77	Ggc/Agc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527731	157527731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	332	538	0	ENST00000346085.5:c.5456G>T	p.Trp1819Leu	p.W1819L	ENST00000346085	NM_020732.3	1819	tGg/tTg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729739	41729739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	218	455	0	ENST00000242208.4:c.790G>A	p.Glu264Lys	p.E264K	ENST00000242208	NM_002192.2	264	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104700	69104700	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149428879		P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	300	541	0	ENST00000288368.4:c.4544C>T	p.Ser1515Leu	p.S1515L	ENST00000288368	NM_024870.2	1515	tCg/tTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760687	133760687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	386	771	1	ENST00000318560.5:c.3010C>T	p.Pro1004Ser	p.P1004S	ENST00000318560	NM_005157.4	1004	Cct/Tct																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138944	64138944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	52	402	0	ENST00000334205.4:c.2311C>T	p.Pro771Ser	p.P771S	ENST00000334205	NM_003942.2	771	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	106	820	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	32	467	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286196	66286196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	19	387	1	ENST00000273854.3:c.1490G>A	p.Gly497Glu	p.G497E	ENST00000273854	NM_004439.5	497	gGa/gAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993500	72993500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	76	765	0	ENST00000268489.5:c.545G>A	p.Gly182Glu	p.G182E	ENST00000268489	NM_006885.3	182	gGg/gAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510816	120510816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	47	482	0	ENST00000256646.2:c.1148C>T	p.Pro383Leu	p.P383L	ENST00000256646	NM_024408.3	383	cCt/cTt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959121	2959121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	72	854	0	ENST00000396946.4:c.2395G>A	p.Asp799Asn	p.D799N	ENST00000396946	NM_032415.4	799	Gat/Aat																																																																														
EP300	2033	MSKCC	GRCh37	22	41537076	41537076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	14	382	0	ENST00000263253.7:c.1903G>A	p.Glu635Lys	p.E635K	ENST00000263253	NM_001429.3	635	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55955096	55955096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	48	579	0	ENST00000263923.4:c.3449G>A	p.Arg1150Lys	p.R1150K	ENST00000263923	NM_002253.2	1150	aGa/aAa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980352	201980352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	35	795	0	ENST00000359651.3:c.88C>T	p.Pro30Ser	p.P30S	ENST00000359651		30	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	37	341	1				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108151774	108151774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	17	389	0	ENST00000278616.4:c.3455C>T	p.Ser1152Phe	p.S1152F	ENST00000278616	NM_000051.3	1152	tCt/tTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522425	187522425	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	20	481	0	ENST00000441802.2:c.11638G>A	p.Glu3880Lys	p.E3880K	ENST00000441802	NM_005245.3	3880	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218848	36218848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	71	926	0	ENST00000222270.7:c.4459C>T	p.Arg1487Cys	p.R1487C	ENST00000222270	NM_014727.1	1487	Cgc/Tgc																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518415	204518415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	23	538	0	ENST00000367182.3:c.1078C>T	p.Pro360Ser	p.P360S	ENST00000367182	NM_001278516.1	360	Cct/Tct																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498734	246498734	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	52	641	0	ENST00000388985.4:c.271A>T	p.Lys91Ter	p.K91*	ENST00000388985		91	Aaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392038	118392038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	43	590	0	ENST00000534358.1:c.11549G>A	p.Arg3850Lys	p.R3850K	ENST00000534358	NM_005933.3	3850	aGa/aAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49419988	49419988	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	54	640	0	ENST00000301067.7:c.15761T>G	p.Val5254Gly	p.V5254G	ENST00000301067	NM_003482.3	5254	gTc/gGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446049	49446049	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	51	926	0	ENST00000301067.7:c.1417G>T	p.Glu473Ter	p.E473*	ENST00000301067	NM_003482.3	473	Gaa/Taa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514814	103514814	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	27	430	0	ENST00000355739.4:c.1315G>C	p.Gly439Arg	p.G439R	ENST00000355739	NM_000123.3	439	Gga/Cga																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986782	36986782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	35	120	1	ENST00000354822.5:c.907G>A	p.Gly303Ser	p.G303S	ENST00000354822	NM_001079668.2	303	Ggt/Agt																																																																														
MGA	23269	MSKCC	GRCh37	15	42003267	42003267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	27	624	0	ENST00000219905.7:c.2804G>A	p.Gly935Glu	p.G935E	ENST00000219905	NM_001164273.1	935	gGa/gAa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708449	43708449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	34	614	0	ENST00000382044.4:c.4847T>C	p.Leu1616Pro	p.L1616P	ENST00000382044	NM_001141980.1	1616	cTt/cCt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43773191	43773191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	23	540	0	ENST00000382044.4:c.401C>T	p.Pro134Leu	p.P134L	ENST00000382044	NM_001141980.1	134	cCt/cTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830471	72830472	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	46	583	2	ENST00000268489.5:c.6109_6110delinsTT	p.Pro2037Leu	p.P2037L	ENST00000268489	NM_006885.3	2037	CCa/TTa																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40353797	40353798	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	66	688	1	ENST00000293328.3:c.2322_2323delinsTT	p.Arg775Trp	p.R775W	ENST00000293328	NM_012448.3	774	ggCCgg/ggTTgg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40481454	40481454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	45	616	0	ENST00000264657.5:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000264657	NM_139276.2	419	Ggg/Tgg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59820492	59820492	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	14	390	0	ENST00000259008.2:c.2261G>C	p.Gly754Ala	p.G754A	ENST00000259008	NM_032043.2	754	gGa/gCa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532640	63532640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	44	780	1	ENST00000307078.5:c.1939G>A	p.Glu647Lys	p.E647K	ENST00000307078	NM_004655.3	647	Gag/Aag																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099252	4099252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	61	810	1	ENST00000262948.5:c.866G>A	p.Gly289Glu	p.G289E	ENST00000262948	NM_030662.3	289	gGa/gAa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39233561	39233562	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	33	419	0	ENST00000402219.2:c.2782_2783delinsTT	p.Pro928Phe	p.P928F	ENST00000402219	NM_005633.3	928	CCt/TTt																																																																														
BARD1	580	MSKCC	GRCh37	2	215593581	215593581	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	31	425	0	ENST00000260947.4:c.2153A>T	p.Asn718Ile	p.N718I	ENST00000260947	NM_000465.2	718	aAt/aTt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023328	31023328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	35	686	1	ENST00000375687.4:c.2813C>T	p.Pro938Leu	p.P938L	ENST00000375687	NM_015338.5	938	cCt/cTt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748165	41748165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	32	467	0	ENST00000226382.2:c.604C>T	p.Pro202Ser	p.P202S	ENST00000226382	NM_003924.3	202	Ccc/Tcc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286280	66286280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	13	300	0	ENST00000273854.3:c.1406C>T	p.Pro469Leu	p.P469L	ENST00000273854	NM_004439.5	469	cCa/cTa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157387	106157387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	13	398	0	ENST00000380013.4:c.2288C>T	p.Pro763Leu	p.P763L	ENST00000380013	NM_001127208.2	763	cCc/cTc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43745276	43745277	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	56	800	2	ENST00000523873.1:c.189_190delinsAA	p.Glu64Lys	p.E64K	ENST00000523873		63	caGGag/caAAag																																																																														
HGF	3082	MSKCC	GRCh37	7	81346626	81346626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	26	361	0	ENST00000222390.5:c.1327C>T	p.Pro443Ser	p.P443S	ENST00000222390	NM_000601.4	443	Cca/Tca																																																																														
CDK6	1021	MSKCC	GRCh37	7	92244471	92244472	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	35	344	1	ENST00000265734.4:c.963_964delinsAA	p.Glu322Lys	p.E322K	ENST00000265734	NM_001259.6	321	tcGGag/tcAAag																																																																														
BRAF	673	MSKCC	GRCh37	7	140477858	140477858	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	18	560	0	ENST00000288602.6:c.1450A>T	p.Met484Leu	p.M484L	ENST00000288602	NM_004333.4	484	Atg/Ttg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194682	29194682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	62	851	0	ENST00000240100.2:c.1046C>T	p.Pro349Leu	p.P349L	ENST00000240100	NM_001394.6	349	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518139	8518139	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	79	548	0	ENST00000356435.5:c.1252T>A	p.Ser418Thr	p.S418T	ENST00000356435		418	Tcc/Acc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971157	21971163	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGTGG	GCCGTGG	ACCGT			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	62	445	1	ENST00000304494.5:c.195_201delinsACGGT	p.His66ArgfsTer53	p.H66Rfs*53	ENST00000304494	NM_000077.4	65	ctCCACGGC/ctACGGT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971157	21971163	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGTGG	GCCGTGG	ACCGT			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	62	445	1	ENST00000304494.5:c.195_201delinsACGGT	p.His66ArgfsTer53	p.H66Rfs*53	ENST00000304494	NM_000077.4	65	ctCCACGGC/ctACGGT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971157	21971163	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGTGG	GCCGTGG	ACCGT			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	62	445	1	ENST00000304494.5:c.195_201delinsACGGT	p.His66ArgfsTer53	p.H66Rfs*53	ENST00000304494	NM_000077.4	65	ctCCACGGC/ctACGGT																																																																														
ATRX	546	MSKCC	GRCh37	X	76907752	76907752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	28	521	0	ENST00000373344.5:c.4409C>T	p.Ser1470Phe	p.S1470F	ENST00000373344	NM_000489.3	1470	tCc/tTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200049	123200049	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	17	345	0	ENST00000218089.9:c.2121T>A	p.Asp707Glu	p.D707E	ENST00000218089	NM_001042749.1	707	gaT/gaA																																																																														
STAG2	10735	MSKCC	GRCh37	X	123202413	123202413	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0038413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	25	425	0	ENST00000218089.9:c.2266-1G>A		p.X756_splice	ENST00000218089	NM_001042749.1	756																																																																															
MTOR	2475	MSKCC	GRCh37	1	11175483	11175484	+	missense_variant	Missense_Mutation	DNP	GA	GA	AC			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	166	390	2	ENST00000361445.4:c.7058_7059delinsGT	p.Ile2353Ser	p.I2353S	ENST00000361445	NM_004958.3	2353	aTC/aGT																																																																														
MTOR	2475	MSKCC	GRCh37	1	11294237	11294237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	294	452	1	ENST00000361445.4:c.2294C>T	p.Pro765Leu	p.P765L	ENST00000361445	NM_004958.3	765	cCc/cTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16263715	16263716	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	86	367	1	ENST00000375759.3:c.10084_10085delinsTT	p.Pro3362Phe	p.P3362F	ENST00000375759	NM_015001.2	3362	CCt/TTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107183	27107183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	179	400	0	ENST00000324856.7:c.6794C>T	p.Pro2265Leu	p.P2265L	ENST00000324856	NM_006015.4	2265	cCg/cTg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115272956	115272956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	46	467	0	ENST00000438362.2:c.1417C>T	p.Arg473Cys	p.R473C	ENST00000438362	NM_001242891.1	473	Cgt/Tgt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849818	156849818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	84	442	2	ENST00000524377.1:c.2074C>T	p.Arg692Cys	p.R692C	ENST00000524377	NM_002529.3	692	Cgc/Tgc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206647779	206647779	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	89	407	0	ENST00000367120.3:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000367120	NM_014002.3	65	Cag/Tag																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206652340	206652341	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	113	541	1	ENST00000367120.3:c.1047_1048delinsTT	p.Gln350Ter	p.Q350*	ENST00000367120	NM_014002.3	349	caCCag/caTTag																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245927445	245927445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	133	355	0	ENST00000388985.4:c.1083T>G	p.Phe361Leu	p.F361L	ENST00000388985		361	ttT/ttG																																																																														
TET1	80312	MSKCC	GRCh37	10	70333513	70333513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	74	406	0	ENST00000373644.4:c.1418C>T	p.Ser473Leu	p.S473L	ENST00000373644	NM_030625.2	473	tCa/tTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70451255	70451255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	211	508	0	ENST00000373644.4:c.6095C>T	p.Pro2032Leu	p.P2032L	ENST00000373644	NM_030625.2	2032	cCt/cTt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925409	114925410	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	94	545	1	ENST00000543371.1:c.1487_1488delinsTT	p.Ser496Phe	p.S496F	ENST00000543371	NM_001198531.1	496	tCC/tTT																																																																														
WT1	7490	MSKCC	GRCh37	11	32456586	32456586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	58	78	0	ENST00000332351.3:c.306G>A	p.Trp102Ter	p.W102*	ENST00000332351	NM_024426.4	102	tgG/tgA																																																																														
MEN1	4221	MSKCC	GRCh37	11	64574534	64574534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	247	491	0	ENST00000337652.1:c.876G>T	p.Glu292Asp	p.E292D	ENST00000337652	NM_130803.2	292	gaG/gaT																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200209	67200209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	124	510	1	ENST00000312629.5:c.517T>A	p.Phe173Ile	p.F173I	ENST00000312629	NM_003952.2	173	Ttc/Atc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588835	69588835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	86	540	0	ENST00000168712.1:c.401G>A	p.Arg134Gln	p.R134Q	ENST00000168712	NM_002007.2	134	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940160	71940160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	109	573	0	ENST00000298229.2:c.545C>T	p.Ser182Leu	p.S182L	ENST00000298229	NM_001567.3	182	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108204679	108204679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	17	130	0	ENST00000278616.4:c.7994C>T	p.Pro2665Leu	p.P2665L	ENST00000278616	NM_000051.3	2665	cCt/cTt																																																																														
CBL	867	MSKCC	GRCh37	11	119149009	119149009	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	90	327	0	ENST00000264033.4:c.1227+2T>C		p.X409_splice	ENST00000264033	NM_005188.3	409																																																																															
ARID2	196528	MSKCC	GRCh37	12	46244850	46244850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	207	466	0	ENST00000334344.6:c.2945del	p.Asn982ThrfsTer28	p.N982Tfs*28	ENST00000334344	NM_152641.2	982	Aac/ac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415840	49415840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	65	322	0	ENST00000301067.7:c.16507C>T	p.Pro5503Ser	p.P5503S	ENST00000301067	NM_003482.3	5503	Ccc/Tcc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861264	57861264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	108	419	0	ENST00000228682.2:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000228682	NM_005269.2	354	cGg/cAg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233594	69233594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	29	216	0	ENST00000462284.1:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000462284	NM_002392.5	487	Cca/Tca																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120882	115120883	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	158	412	1	ENST00000257566.3:c.123_124delinsTT	p.Pro42Ser	p.P42S	ENST00000257566	NM_016569.3	41	ttCCcc/ttTTcc																																																																														
POLE	5426	MSKCC	GRCh37	12	133202759	133202760	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	162	459	0	ENST00000320574.5:c.6474_6475delinsTT	p.Arg2159Cys	p.R2159C	ENST00000320574	NM_006231.2	2158	tgCCgc/tgTTgc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589330	28589330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	97	301	0	ENST00000241453.7:c.2717T>G	p.Phe906Cys	p.F906C	ENST00000241453	NM_004119.2	906	tTt/tGt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623897	28623897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	32	272	0	ENST00000241453.7:c.757C>T	p.Pro253Ser	p.P253S	ENST00000241453	NM_004119.2	253	Cct/Tct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937539	32937539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	59	422	0	ENST00000380152.3:c.8200C>T	p.Pro2734Ser	p.P2734S	ENST00000380152		2734	Cct/Tct																																																																														
RB1	5925	MSKCC	GRCh37	13	49039240	49039241	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	92	313	0	ENST00000267163.4:c.2318_2319delinsGT	p.Ser773Cys	p.S773C	ENST00000267163	NM_000321.2	773	tCC/tGT																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061358	38061358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	108	452	1	ENST00000250448.2:c.631C>T	p.Gln211Ter	p.Q211*	ENST00000250448	NM_004496.3	211	Cag/Tag																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	120	552	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707915	43707916	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	107	515	1	ENST00000382044.4:c.4965_4966delinsTT	p.Arg1656Ter	p.R1656*	ENST00000382044	NM_001141980.1	1655	acCCga/acTTga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483927	88483927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	110	531	0	ENST00000360948.2:c.1643C>T	p.Ala548Val	p.A548V	ENST00000360948	NM_001012338.2	548	gCc/gTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633189	3633189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	285	674	0	ENST00000294008.3:c.5062C>T	p.Pro1688Ser	p.P1688S	ENST00000294008	NM_032444.2	1688	Cca/Tca																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640245	3640245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	71	646	0	ENST00000294008.3:c.3394G>A	p.Asp1132Asn	p.D1132N	ENST00000294008	NM_032444.2	1132	Gac/Aac																																																																														
SLX4	84464	MSKCC	GRCh37	16	3656572	3656573	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	91	567	1	ENST00000294008.3:c.662_663delinsTT	p.Pro221Leu	p.P221L	ENST00000294008	NM_032444.2	221	cCC/cTT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3860696	3860696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	196	480	0	ENST00000262367.5:c.883C>G	p.Pro295Ala	p.P295A	ENST00000262367	NM_004380.2	295	Ccc/Gcc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645174	67645174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	193	471	0	ENST00000264010.4:c.439C>T	p.Leu147Phe	p.L147F	ENST00000264010	NM_006565.3	147	Ctt/Ttt																																																																														
CDH1	999	MSKCC	GRCh37	16	68844242	68844242	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	53	367	0	ENST00000261769.5:c.830C>T	p.Pro277Leu	p.P277L	ENST00000261769	NM_004360.3	277	cCa/cTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822139	72822139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	78	420	0	ENST00000268489.5:c.10036C>T	p.Pro3346Ser	p.P3346S	ENST00000268489	NM_006885.3	3346	Cct/Tct																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350107	89350107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	120	532	0	ENST00000301030.4:c.2843G>T	p.Gly948Val	p.G948V	ENST00000301030	NM_001256183.1	948	gGg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578396	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	242	439	0	ENST00000269305.4:c.534_535delCCinsTT	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	178	caCCat/caTTat																																																																														
NF1	4763	MSKCC	GRCh37	17	29653191	29653191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	56	263	0	ENST00000358273.4:c.5189C>T	p.Thr1730Ile	p.T1730I	ENST00000358273	NM_001042492.2	1730	aCc/aTc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682531	37682531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	228	285	0	ENST00000447079.4:c.3722C>T	p.Pro1241Leu	p.P1241L	ENST00000447079	NM_015083.1	1241	cCc/cTc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40379600	40379600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	116	621	0	ENST00000293328.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000293328	NM_012448.3	78	Gaa/Aaa																																																																														
YES1	7525	MSKCC	GRCh37	18	743374	743374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	62	284	0	ENST00000314574.4:c.766C>T	p.Pro256Ser	p.P256S	ENST00000314574	NM_005433.3	256	Cca/Tca																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222853	5222853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	176	428	0	ENST00000357368.4:c.2950C>T	p.Pro984Ser	p.P984S	ENST00000357368	NM_002850.3	984	Ccg/Tcg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5229613	5229614	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	25	65	1	ENST00000357368.4:c.2237_2238delinsTT	p.Pro746Leu	p.P746L	ENST00000357368	NM_002850.3	746	cCC/cTT																																																																														
JAK3	3718	MSKCC	GRCh37	19	17937692	17937692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	313	440	0	ENST00000458235.1:c.3235G>A	p.Ala1079Thr	p.A1079T	ENST00000458235	NM_000215.3	1079	Gcc/Acc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943625	17943625	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	137	546	0	ENST00000458235.1:c.2464C>G	p.Leu822Val	p.L822V	ENST00000458235	NM_000215.3	822	Ctc/Gtc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792558	33792558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	19	57	0	ENST00000498907.2:c.763G>A	p.Gly255Arg	p.G255R	ENST00000498907	NM_004364.3	255	Ggg/Agg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223262	36223262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	264	623	1	ENST00000222270.7:c.5812C>T	p.Gln1938Ter	p.Q1938*	ENST00000222270	NM_014727.1	1938	Cag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224583	36224583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	228	560	0	ENST00000222270.7:c.7045C>T	p.Pro2349Ser	p.P2349S	ENST00000222270	NM_014727.1	2349	Cct/Tct																																																																														
AXL	558	MSKCC	GRCh37	19	41762437	41762437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	203	441	0	ENST00000301178.4:c.2117G>A	p.Gly706Glu	p.G706E	ENST00000301178	NM_021913.4	706	gGa/gAa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082766	16082766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	22	80	0	ENST00000281043.3:c.580C>T	p.Pro194Ser	p.P194S	ENST00000281043	NM_005378.4	194	Ccc/Tcc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46609603	46609603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	102	564	0	ENST00000263734.3:c.2327C>T	p.Pro776Leu	p.P776L	ENST00000263734	NM_001430.4	776	cCc/cTc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61722741	61722742	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	57	270	1	ENST00000401558.2:c.895_896delinsTT	p.Pro299Phe	p.P299F	ENST00000401558	NM_003400.3	299	CCt/TTt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190732564	190732564	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	44	303	0	ENST00000441310.2:c.2382A>T	p.Lys794Asn	p.K794N	ENST00000441310	NM_000534.4	794	aaA/aaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483981	212483981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	22	301	0	ENST00000342788.4:c.2222G>A	p.Gly741Glu	p.G741E	ENST00000342788	NM_005235.2	741	gGa/gAa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9543575	9543575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	152	355	0	ENST00000353224.5:c.1579G>C	p.Glu527Gln	p.E527Q	ENST00000353224	NM_177990.2	527	Gaa/Caa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561261	9561261	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	130	334	0	ENST00000353224.5:c.521A>G	p.Lys174Arg	p.K174R	ENST00000353224	NM_177990.2	174	aAa/aGa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561418	9561418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	76	456	0	ENST00000353224.5:c.364G>A	p.Glu122Lys	p.E122K	ENST00000353224	NM_177990.2	122	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944449	40944449	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	141	441	0	ENST00000373198.4:c.2053A>C	p.Lys685Gln	p.K685Q	ENST00000373198	NM_133170.3	685	Aag/Cag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101018	41101018	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	137	453	0	ENST00000373198.4:c.1338C>G	p.His446Gln	p.H446Q	ENST00000373198	NM_133170.3	446	caC/caG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306689	41306689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	87	482	0	ENST00000373198.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000373198	NM_133170.3	324	Gaa/Aaa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321174	62321175	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	198	516	1	ENST00000508582.2:c.2169_2170delinsTT	p.Arg724Trp	p.R724W	ENST00000508582		723	atCCgg/atTTgg																																																																														
ERG	2078	MSKCC	GRCh37	21	39755558	39755558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	86	420	0	ENST00000288319.7:c.1207C>T	p.Pro403Ser	p.P403S	ENST00000288319	NM_182918.3	403	Ccc/Tcc																																																																														
EP300	2033	MSKCC	GRCh37	22	41536160	41536160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	111	374	0	ENST00000263253.7:c.1777C>T	p.Pro593Ser	p.P593S	ENST00000263253	NM_001429.3	593	Cct/Tct																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713511	30713511	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	209	402	0	ENST00000359013.4:c.911T>G	p.Phe304Cys	p.F304C	ENST00000359013	NM_001024847.2	304	tTt/tGt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026979	71026979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	67	359	0	ENST00000318789.4:c.1348G>A	p.Ala450Thr	p.A450T	ENST00000318789	NM_032682.5	450	Gca/Aca																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71096135	71096135	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	138	265	0	ENST00000318789.4:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000318789	NM_032682.5	208	Cag/Tag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968335	134968335	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	120	401	0	ENST00000398015.3:c.2846+2T>G		p.X949_splice	ENST00000398015	NM_004441.4	949																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185146382	185146382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	68	201	0	ENST00000265026.3:c.13C>T	p.Gln5Ter	p.Q5*	ENST00000265026	NM_004721.4	5	Cag/Tag																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748170	41748170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	61	329	0	ENST00000226382.2:c.599C>T	p.Pro200Leu	p.P200L	ENST00000226382	NM_003924.3	200	cCc/cTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55153598	55153598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	88	307	0	ENST00000257290.5:c.2564C>T	p.Thr855Ile	p.T855I	ENST00000257290	NM_006206.4	855	aCc/aTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55561711	55561711	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55755457		P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	42	229	1	ENST00000288135.5:c.101C>T	p.Pro34Leu	p.P34L	ENST00000288135	NM_000222.2	34	cCg/cTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55974015	55974015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	156	479	0	ENST00000263923.4:c.1301C>T	p.Ser434Phe	p.S434F	ENST00000263923	NM_002253.2	434	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55974019	55974019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	58	471	0	ENST00000263923.4:c.1297G>A	p.Asp433Asn	p.D433N	ENST00000263923	NM_002253.2	433	Gat/Aat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268207	153268207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	42	214	0	ENST00000281708.4:c.601C>T	p.Pro201Ser	p.P201S	ENST00000281708	NM_033632.3	201	Cca/Tca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628121	187628122	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	130	508	2	ENST00000441802.2:c.2860_2861delinsTT	p.Pro954Phe	p.P954F	ENST00000441802	NM_005245.3	954	CCt/TTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1294079	1294079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	123	659	2	ENST00000310581.5:c.922C>T	p.Pro308Ser	p.P308S	ENST00000310581	NM_198253.2	308	Cca/Tca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	155	286	1				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35873675	35873675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	35	273	0	ENST00000303115.3:c.631C>T	p.His211Tyr	p.H211Y	ENST00000303115	NM_002185.3	211	Cac/Tac																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38967280	38967280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	25	242	1	ENST00000357387.3:c.1201C>T	p.Arg401Cys	p.R401C	ENST00000357387	NM_152756.3	401	Cgt/Tgt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435605	149435605	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	113	388	0	ENST00000286301.3:c.2538G>A	p.Trp846Ter	p.W846*	ENST00000286301	NM_005211.3	846	tgG/tgA																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515316	149515316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	88	509	0	ENST00000261799.4:c.166G>A	p.Gly56Ser	p.G56S	ENST00000261799	NM_002609.3	56	Ggt/Agt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180041095	180041096	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	99	518	0	ENST00000261937.6:c.3303_3304delinsAA	p.Val1102Met	p.V1102M	ENST00000261937	NM_182925.4	1101	ggGGtg/ggAAtg																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032031	26032031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	52	311	0	ENST00000244661.2:c.258G>C	p.Gln86His	p.Q86H	ENST00000244661	NM_003537.3	86	caG/caC																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250469	26250469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	72	430	0	ENST00000446824.2:c.365C>T	p.Pro122Leu	p.P122L	ENST00000446824	NM_021018.2	122	cCc/cTc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815867	32815868	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	166	399	0	ENST00000354258.4:c.1748_1749delinsAA	p.Gly583Glu	p.G583E	ENST00000354258	NM_000593.5	583	gGG/gAA																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790684	89790684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	105	536	0	ENST00000336032.3:c.71C>T	p.Ser24Phe	p.S24F	ENST00000336032	NM_006813.2	24	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969117	93969117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	44	248	0	ENST00000369303.4:c.1879G>A	p.Glu627Lys	p.E627K	ENST00000369303	NM_004440.3	627	Gag/Aag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068099	94068099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	30	216	0	ENST00000369303.4:c.863C>T	p.Ser288Phe	p.S288F	ENST00000369303	NM_004440.3	288	tCt/tTt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120714	94120714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	39	319	0	ENST00000369303.4:c.337C>T	p.Pro113Ser	p.P113S	ENST00000369303	NM_004440.3	113	Cct/Tct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647493	117647493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	107	308	0	ENST00000368508.3:c.5451G>A	p.Trp1817Ter	p.W1817*	ENST00000368508	NM_002944.2	1817	tgG/tgA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117650544	117650544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	175	422	0	ENST00000368508.3:c.5314G>A	p.Glu1772Lys	p.E1772K	ENST00000368508	NM_002944.2	1772	Gag/Aag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522148	157522148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	88	438	0	ENST00000346085.5:c.4420C>T	p.Pro1474Ser	p.P1474S	ENST00000346085	NM_020732.3	1474	Ccc/Tcc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	108	316	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729384	41729384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	193	445	0	ENST00000242208.4:c.1145G>A	p.Ser382Asn	p.S382N	ENST00000242208	NM_002192.2	382	aGc/aAc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729516	41729516	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	178	447	0	ENST00000242208.4:c.1013G>A	p.Trp338Ter	p.W338*	ENST00000242208	NM_002192.2	338	tGg/tAg																																																																														
HGF	3082	MSKCC	GRCh37	7	81346551	81346551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	34	232	0	ENST00000222390.5:c.1402C>T	p.Arg468Cys	p.R468C	ENST00000222390	NM_000601.4	468	Cgt/Tgt																																																																														
HGF	3082	MSKCC	GRCh37	7	81346668	81346668	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	89	196	0	ENST00000222390.5:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000222390	NM_000601.4	429	Gaa/Taa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508442	106508442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	45	250	0	ENST00000359195.3:c.436G>A	p.Glu146Lys	p.E146K	ENST00000359195	NM_002649.2	146	Gag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513263	106513263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	155	263	0	ENST00000359195.3:c.2167G>A	p.Gly723Ser	p.G723S	ENST00000359195	NM_002649.2	723	Ggc/Agc																																																																														
SMO	6608	MSKCC	GRCh37	7	128850885	128850885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61740964		P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	208	520	0	ENST00000249373.3:c.1732G>A	p.Glu578Lys	p.E578K	ENST00000249373	NM_005631.4	578	Gag/Aag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372112	55372112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	160	308	0	ENST00000297316.4:c.802G>A	p.Gly268Ser	p.G268S	ENST00000297316	NM_022454.3	268	Ggt/Agt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70967623	70967623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	50	360	0	ENST00000276594.2:c.1400G>A	p.Gly467Glu	p.G467E	ENST00000276594	NM_024504.3	467	gGg/gAg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141559293	141559293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	137	488	0	ENST00000220592.5:c.1508C>T	p.Pro503Leu	p.P503L	ENST00000220592	NM_012154.3	503	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331589	8331589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	36	315	1	ENST00000356435.5:c.5527C>T	p.His1843Tyr	p.H1843Y	ENST00000356435		1843	Cat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471012	8471012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	43	268	0	ENST00000356435.5:c.3487G>A	p.Glu1163Lys	p.E1163K	ENST00000356435		1163	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	213	387	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	213	387	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	213	387	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TEK	7010	MSKCC	GRCh37	9	27217686	27217686	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	133	374	0	ENST00000380036.4:c.2992G>A	p.Gly998Arg	p.G998R	ENST00000380036	NM_000459.3	998	Gga/Aga																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412493	80412493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	56	283	0	ENST00000286548.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000286548	NM_002072.3	183	cGa/cAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209703	98209703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	129	494	0	ENST00000331920.6:c.3835C>T	p.Pro1279Ser	p.P1279S	ENST00000331920	NM_000264.3	1279	Ccc/Tcc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760457	133760457	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	206	536	0	ENST00000318560.5:c.2780T>G	p.Val927Gly	p.V927G	ENST00000318560	NM_005157.4	927	gTc/gGc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760897	133760897	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	229	524	0	ENST00000318560.5:c.3220A>G	p.Ile1074Val	p.I1074V	ENST00000318560	NM_005157.4	1074	Atc/Gtc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913182	39913182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	82	163	0	ENST00000378444.4:c.4933C>G	p.Pro1645Ala	p.P1645A	ENST00000378444	NM_001123385.1	1645	Ccc/Gcc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120882	115120882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	154	412	0	ENST00000257566.3:c.124C>T	p.Pro42Ser	p.P42S	ENST00000257566	NM_016569.3	42	Ccc/Tcc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28624292	28624292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	24	371	0	ENST00000241453.7:c.682G>A	p.Asp228Asn	p.D228N	ENST00000241453	NM_004119.2	228	Gac/Aac																																																																														
STAG2	10735	MSKCC	GRCh37	X	123171462	123171462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	46	310	0	ENST00000218089.9:c.374C>T	p.Ser125Leu	p.S125L	ENST00000218089	NM_001042749.1	125	tCa/tTa																																																																														
ALK	238	MSKCC	GRCh37	2	30142982	30142982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	374	874	0	ENST00000389048.3:c.544G>A	p.Glu182Lys	p.E182K	ENST00000389048	NM_004304.4	182	Gaa/Aaa																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0039026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	405	628	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056181	27056181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	240	450	0	ENST00000324856.7:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000324856	NM_006015.4	393	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295215	1295215	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	162	360	1				ENST00000310581	NM_198253.2																																																																																
NKX2-1	7080	MSKCC	GRCh37	14	36988327	36988327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	126	465	1	ENST00000354822.5:c.326C>T	p.Ser109Leu	p.S109L	ENST00000354822	NM_001079668.2	109	tCg/tTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295176	1295176	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0039026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	133	287	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	11122	MSKCC	GRCh37	20	40714369	40714369	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	79	345	0	ENST00000373198.4:c.4028G>A	p.Arg1343Gln	p.R1343Q	ENST00000373198	NM_133170.3	1343	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101080	27101081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	162	745	0	ENST00000324856.7:c.4365dup	p.Pro1456SerfsTer35	p.P1456Sfs*35	ENST00000324856	NM_006015.4	1454	-/T																																																																														
TERT	7015	MSKCC	GRCh37	5	1295181	1295181	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	137	285	0				ENST00000310581	NM_198253.2																																																																																
PLK2	10769	MSKCC	GRCh37	5	57753318	57753318	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	38	328	0	ENST00000274289.3:c.806T>G	p.Val269Gly	p.V269G	ENST00000274289	NM_006622.3	269	gTa/gGa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179072	123179072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	122	543	0	ENST00000218089.9:c.521G>T	p.Ser174Ile	p.S174I	ENST00000218089	NM_001042749.1	174	aGt/aTt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508121	106508121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	133	188	1	ENST00000359195.3:c.115C>T	p.Pro39Ser	p.P39S	ENST00000359195	NM_002649.2	39	Ccc/Tcc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120612003	120612004	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	10	17	0	ENST00000256646.2:c.17_18delCC	p.Pro6ArgfsTer27	p.P6Rfs*27	ENST00000256646	NM_024408.3	6	cCC/c																																																																														
KDR	3791	MSKCC	GRCh37	4	55955949	55955949	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	106	367	0	ENST00000263923.4:c.3213G>A	p.Trp1071Ter	p.W1071*	ENST00000263923	NM_002253.2	1071	tgG/tgA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9547022	9547022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	83	224	0	ENST00000353224.5:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000353224	NM_177990.2	334	Gat/Aat																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	92	346	1	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																																																														
TP63	8626	MSKCC	GRCh37	3	189604319	189604319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	102	389	0	ENST00000264731.3:c.1486C>T	p.Pro496Ser	p.P496S	ENST00000264731	NM_003722.4	496	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376626	8376626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	84	353	2	ENST00000356435.5:c.4487G>A	p.Arg1496Gln	p.R1496Q	ENST00000356435		1496	cGa/cAa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546761	9546761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	210	314	0	ENST00000353224.5:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000353224	NM_177990.2	421	Gac/Aac																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508805	106508805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	118	468	0	ENST00000359195.3:c.799G>A	p.Glu267Lys	p.E267K	ENST00000359195	NM_002649.2	267	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984848	9984848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	116	359	1	ENST00000330684.3:c.1117G>A	p.Glu373Lys	p.E373K	ENST00000330684	NM_001134407.1	373	Gaa/Aaa																																																																														
MPL	4352	MSKCC	GRCh37	1	43812522	43812522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	149	542	0	ENST00000372470.3:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000372470	NM_005373.2	409	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	145	179	0				ENST00000310581	NM_198253.2																																																																																
PGR	5241	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	59	254	0	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga																																																																														
TSC1	7248	MSKCC	GRCh37	9	135801074	135801074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	71	376	0	ENST00000298552.3:c.263C>T	p.Ser88Phe	p.S88F	ENST00000298552	NM_001162426.1	88	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285793	46285793	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	252	298	1	ENST00000334344.6:c.5062-1G>A		p.X1688_splice	ENST00000334344	NM_152641.2	1688																																																																															
LATS2	26524	MSKCC	GRCh37	13	21562870	21562870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	126	465	0	ENST00000382592.4:c.1049C>T	p.Pro350Leu	p.P350L	ENST00000382592	NM_014572.2	350	cCc/cTc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930342	39930342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	145	460	0	ENST00000378444.4:c.3122C>T	p.Ser1041Phe	p.S1041F	ENST00000378444	NM_001123385.1	1041	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488718	212488718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	154	437	0	ENST00000342788.4:c.2131C>T	p.Arg711Cys	p.R711C	ENST00000342788	NM_005235.2	711	Cgt/Tgt																																																																														
KDR	3791	MSKCC	GRCh37	4	55962398	55962398	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	86	298	0	ENST00000263923.4:c.2726G>A	p.Gly909Glu	p.G909E	ENST00000263923	NM_002253.2	909	gGa/gAa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435772	110435772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	51	53	0	ENST00000375856.3:c.2629C>T	p.Pro877Ser	p.P877S	ENST00000375856	NM_003749.2	877	Ccg/Tcg																																																																														
ALK	238	MSKCC	GRCh37	2	29473990	29473990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	91	609	0	ENST00000389048.3:c.2185C>T	p.Pro729Ser	p.P729S	ENST00000389048	NM_004304.4	729	Cca/Tca																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422086	81422086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	120	463	0	ENST00000298171.2:c.62G>A	p.Gly21Glu	p.G21E	ENST00000298171	NM_000369.2	21	gGa/gAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8317926	8317926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	58	337	0	ENST00000356435.5:c.5687C>T	p.Ser1896Phe	p.S1896F	ENST00000356435		1896	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117700235	117700235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	88	384	0	ENST00000368508.3:c.2584C>T	p.Leu862Phe	p.L862F	ENST00000368508	NM_002944.2	862	Ctt/Ttt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	406293	406293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	115	416	0	ENST00000399788.2:c.4148C>T	p.Ser1383Phe	p.S1383F	ENST00000399788	NM_001042603.1	1383	tCc/tTc																																																																														
INSR	3643	MSKCC	GRCh37	19	7184333	7184333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	140	510	0	ENST00000302850.5:c.968C>T	p.Ser323Phe	p.S323F	ENST00000302850	NM_000208.2	323	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609828	117609828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	124	433	0	ENST00000368508.3:c.6871C>T	p.Pro2291Ser	p.P2291S	ENST00000368508	NM_002944.2	2291	Cct/Tct																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217393	123217393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	77	285	1	ENST00000218089.9:c.3047G>A	p.Arg1016Lys	p.R1016K	ENST00000218089	NM_001042749.1	1016	aGa/aAa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35875648	35875648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	70	266	0	ENST00000303115.3:c.835C>T	p.His279Tyr	p.H279Y	ENST00000303115	NM_002185.3	279	Cat/Tat																																																																														
TP63	8626	MSKCC	GRCh37	3	189455536	189455536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	151	355	0	ENST00000264731.3:c.70G>A	p.Glu24Lys	p.E24K	ENST00000264731	NM_003722.4	24	Gaa/Aaa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911436	39911436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	115	463	0	ENST00000378444.4:c.5194G>A	p.Glu1732Lys	p.E1732K	ENST00000378444	NM_001123385.1	1732	Gaa/Aaa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367944	15367944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	182	703	0	ENST00000263377.2:c.1382C>T	p.Pro461Leu	p.P461L	ENST00000263377	NM_058243.2	461	cCt/cTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478758	57478758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	84	287	0	ENST00000371085.3:c.344C>T	p.Pro115Leu	p.P115L	ENST00000371085	NM_000516.4	115	cCc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923328	9923328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	138	492	0	ENST00000330684.3:c.1959G>A	p.Met653Ile	p.M653I	ENST00000330684	NM_001134407.1	653	atG/atA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259565	89259565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	89	281	0	ENST00000336596.2:c.709G>A	p.Glu237Lys	p.E237K	ENST00000336596	NM_005233.5	237	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959121	2959121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	176	619	0	ENST00000396946.4:c.2395G>A	p.Asp799Asn	p.D799N	ENST00000396946	NM_032415.4	799	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8436605	8436605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201031030		P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	41	313	0	ENST00000356435.5:c.4073C>T	p.Ser1358Phe	p.S1358F	ENST00000356435		1358	tCc/tTc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625110	69625110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	118	608	1	ENST00000334134.2:c.683C>T	p.Ser228Leu	p.S228L	ENST00000334134	NM_005247.2	228	tCg/tTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499707	8499707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	68	413	0	ENST00000356435.5:c.2262G>A	p.Met754Ile	p.M754I	ENST00000356435		754	atG/atA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546784	9546784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	196	328	0	ENST00000353224.5:c.1238C>T	p.Pro413Leu	p.P413L	ENST00000353224	NM_177990.2	413	cCg/cTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968102	68968102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	39	391	0	ENST00000288368.4:c.1131G>A	p.Met377Ile	p.M377I	ENST00000288368	NM_024870.2	377	atG/atA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524996	8524996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	55	270	0	ENST00000356435.5:c.608G>A	p.Gly203Glu	p.G203E	ENST00000356435		203	gGa/gAa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47677780	47677780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	102	390	0	ENST00000347630.2:c.1085C>T	p.Pro362Leu	p.P362L	ENST00000347630	NM_001007230.1	362	cCt/cTt																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872881	136872881	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	116	335	0	ENST00000241393.3:c.617T>C	p.Val206Ala	p.V206A	ENST00000241393	NM_003467.2	206	gTt/gCt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068238	30068238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	70	322	1	ENST00000331968.5:c.2161C>T	p.Pro721Ser	p.P721S	ENST00000331968	NM_002742.2	721	Cct/Tct																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748519	43748519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	120	354	0	ENST00000523873.1:c.473C>T	p.Ser158Phe	p.S158F	ENST00000523873		158	tCc/tTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10259681	10259681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	97	354	0	ENST00000340748.4:c.2551C>T	p.Pro851Ser	p.P851S	ENST00000340748		851	Ccc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757459	40757459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	152	488	0	ENST00000373198.4:c.2839C>T	p.Arg947Trp	p.R947W	ENST00000373198	NM_133170.3	947	Cgg/Tgg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526781	31526781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	159	525	0	ENST00000344624.3:c.259C>T	p.Pro87Ser	p.P87S	ENST00000344624		87	Ccg/Tcg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926910	112926910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	384	430	0	ENST00000351677.2:c.1530G>C	p.Gln510His	p.Q510H	ENST00000351677	NM_002834.3	510	caG/caC																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38591712	38591713	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	157	395	0	ENST00000299084.4:c.177dup	p.Ile60TyrfsTer18	p.I60Yfs*18	ENST00000299084	NM_152594.2	57	-/T																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992692	68992692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	53	401	0	ENST00000288368.4:c.1657G>A	p.Glu553Lys	p.E553K	ENST00000288368	NM_024870.2	553	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55946286	55946286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	82	236	0	ENST00000263923.4:c.3893G>A	p.Gly1298Asp	p.G1298D	ENST00000263923	NM_002253.2	1298	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	187	192	0				ENST00000310581	NM_198253.2																																																																																
FLT3	2322	MSKCC	GRCh37	13	28622418	28622418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	76	359	0	ENST00000241453.7:c.1199G>A	p.Gly400Glu	p.G400E	ENST00000241453	NM_004119.2	400	gGa/gAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306763	41306763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	93	369	0	ENST00000373198.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000373198	NM_133170.3	299	gCt/gTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210120	55210120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	76	365	0	ENST00000275493.2:c.230C>T	p.Ser77Phe	p.S77F	ENST00000275493	NM_005228.3	77	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101604	27101604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	138	688	0	ENST00000324856.7:c.4886C>T	p.Pro1629Leu	p.P1629L	ENST00000324856	NM_006015.4	1629	cCt/cTt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243800963	243800963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	58	407	0	ENST00000263826.5:c.511G>A	p.Gly171Arg	p.G171R	ENST00000263826	NM_005465.4	171	Gga/Aga																																																																														
RET	5979	MSKCC	GRCh37	10	43609021	43609021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	73	534	0	ENST00000355710.3:c.1777G>A	p.Gly593Arg	p.G593R	ENST00000355710	NM_020975.4	593	Gga/Aga																																																																														
TET1	80312	MSKCC	GRCh37	10	70332627	70332627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	57	444	0	ENST00000373644.4:c.532C>T	p.Pro178Ser	p.P178S	ENST00000373644	NM_030625.2	178	Ccc/Tcc																																																																														
TET1	80312	MSKCC	GRCh37	10	70405100	70405100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	41	395	0	ENST00000373644.4:c.2614C>G	p.Pro872Ala	p.P872A	ENST00000373644	NM_030625.2	872	Ccc/Gcc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325107	123325107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	117	552	0	ENST00000358487.5:c.221A>C	p.Lys74Thr	p.K74T	ENST00000358487	NM_000141.4	74	aAg/aCg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137313	64137313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	151	488	0	ENST00000334205.4:c.1745C>G	p.Ala582Gly	p.A582G	ENST00000334205	NM_003942.2	582	gCg/gGg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77069965	77069965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	121	380	0	ENST00000356341.3:c.575C>A	p.Pro192Gln	p.P192Q	ENST00000356341	NM_002576.4	192	cCa/cAa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102196084	102196085	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	22	227	0	ENST00000263464.3:c.845dup	p.Tyr282Ter	p.Y282*	ENST00000263464	NM_001165.4	282	tat/tAat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118347518	118347518	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	89	327	0	ENST00000534358.1:c.3157-2A>T		p.X1053_splice	ENST00000534358	NM_005933.3	1053																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118361941	118361941	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	50	202	0	ENST00000534358.1:c.4727A>G	p.Tyr1576Cys	p.Y1576C	ENST00000534358	NM_005933.3	1576	tAt/tGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118367051	118367051	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	52	355	0	ENST00000534358.1:c.5633T>C	p.Leu1878Ser	p.L1878S	ENST00000534358	NM_005933.3	1878	tTa/tCa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118378287	118378287	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	306	521	1	ENST00000534358.1:c.10798G>T	p.Glu3600Ter	p.E3600*	ENST00000534358	NM_005933.3	3600	Gag/Tag																																																																														
CBL	867	MSKCC	GRCh37	11	119158620	119158620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	131	426	0	ENST00000264033.4:c.2000C>T	p.Ser667Phe	p.S667F	ENST00000264033	NM_005188.3	667	tCc/tTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402016	402016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	157	334	0	ENST00000399788.2:c.4775C>T	p.Pro1592Leu	p.P1592L	ENST00000399788	NM_001042603.1	1592	cCc/cTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88428956	88428956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	69	235	0	ENST00000360948.2:c.2144C>T	p.Pro715Leu	p.P715L	ENST00000360948	NM_001012338.2	715	cCa/cTa																																																																														
BLM	641	MSKCC	GRCh37	15	91308589	91308589	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	66	433	0	ENST00000355112.3:c.2138T>C	p.Ile713Thr	p.I713T	ENST00000355112	NM_000057.2	713	aTt/aCt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81962178	81962178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	99	445	0	ENST00000359376.3:c.2530C>T	p.Pro844Ser	p.P844S	ENST00000359376	NM_002661.3	844	Ccc/Tcc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17122342	17122343	+	missense_variant	Missense_Mutation	DNP	GT	GT	AC			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	75	358	1	ENST00000285071.4:c.1052_1053inv	p.His351Arg	p.H351R	ENST00000285071	NM_144997.5	351	cAC/cGT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223162	41223162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	88	476	0	ENST00000357654.3:c.4769T>C	p.Val1590Ala	p.V1590A	ENST00000357654	NM_007294.3	1590	gTt/gCt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119849	70119849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	98	594	0	ENST00000245479.2:c.851C>T	p.Ser284Phe	p.S284F	ENST00000245479	NM_000346.3	284	tCc/tTc																																																																														
YES1	7525	MSKCC	GRCh37	18	743091	743091	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	87	486	0	ENST00000314574.4:c.887G>A	p.Trp296Ter	p.W296*	ENST00000314574	NM_005433.3	296	tGg/tAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290234	15290234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	183	658	0	ENST00000263388.2:c.3401G>A	p.Gly1134Glu	p.G1134E	ENST00000263388	NM_000435.2	1134	gGg/gAg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17951115	17951115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	158	642	1	ENST00000458235.1:c.1178G>A	p.Gly393Asp	p.G393D	ENST00000458235	NM_000215.3	393	gGc/gAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18972840	18972840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	147	468	1	ENST00000262803.5:c.2479G>A	p.Asp827Asn	p.D827N	ENST00000262803	NM_002911.3	827	Gac/Aac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221702	36221702	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	187	696	0	ENST00000222270.7:c.5371del	p.Glu1791SerfsTer104	p.E1791Sfs*104	ENST00000222270	NM_014727.1	1791	Gag/ag																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907669	111907669	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	59	374	0	ENST00000393256.3:c.443T>C	p.Ile148Thr	p.I148T	ENST00000393256	NM_006538.4	148	aTc/aCc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546901	9546901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	275	398	0	ENST00000353224.5:c.1121C>T	p.Pro374Leu	p.P374L	ENST00000353224	NM_177990.2	374	cCg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735472	40735472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	295	575	0	ENST00000373198.4:c.3401G>T	p.Cys1134Phe	p.C1134F	ENST00000373198	NM_133170.3	1134	tGc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100950	41100951	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	134	476	1	ENST00000373198.4:c.1405_1406delinsAA	p.Gly469Asn	p.G469N	ENST00000373198	NM_133170.3	469	GGc/AAc																																																																														
ERG	2078	MSKCC	GRCh37	21	39774502	39774502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	97	409	0	ENST00000288319.7:c.650G>A	p.Arg217Gln	p.R217Q	ENST00000288319	NM_182918.3	217	cGg/cAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189526100	189526100	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	128	514	1	ENST00000264731.3:c.364C>T	p.Gln122Ter	p.Q122*	ENST00000264731	NM_003722.4	122	Cag/Tag																																																																														
TP63	8626	MSKCC	GRCh37	3	189584539	189584539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	82	339	0	ENST00000264731.3:c.835C>A	p.Pro279Thr	p.P279T	ENST00000264731	NM_003722.4	279	Ccc/Acc																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99823034	99823034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	134	228	0	ENST00000280892.6:c.178C>A	p.Gln60Lys	p.Q60K	ENST00000280892	NM_001130678.1	60	Cag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522448	187522448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	121	382	0	ENST00000441802.2:c.11615G>A	p.Arg3872Gln	p.R3872Q	ENST00000441802	NM_005245.3	3872	cGa/cAa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873729	35873729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	66	256	0	ENST00000303115.3:c.685C>T	p.Pro229Ser	p.P229S	ENST00000303115	NM_002185.3	229	Cca/Tca																																																																														
MSH3	4437	MSKCC	GRCh37	5	80160639	80160639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	89	459	0	ENST00000265081.6:c.3008C>T	p.Ser1003Phe	p.S1003F	ENST00000265081	NM_002439.4	1003	tCc/tTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517545	176517545	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	170	807	0	ENST00000292408.4:c.246G>A	p.Trp82Ter	p.W82*	ENST00000292408	NM_213647.1	82	tgG/tgA																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057749	180057749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	152	545	1	ENST00000261937.6:c.206C>T	p.Ala69Val	p.A69V	ENST00000261937	NM_182925.4	69	gCc/gTc																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197259	26197259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	80	378	0	ENST00000356476.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000356476		74	Gag/Aag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672858	30672858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	183	662	0	ENST00000376406.3:c.4102C>T	p.Pro1368Ser	p.P1368S	ENST00000376406	NM_014641.2	1368	Cct/Tct																																																																														
PARK2	5071	MSKCC	GRCh37	6	161807873	161807873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	103	359	0	ENST00000366898.1:c.1120G>A	p.Glu374Lys	p.E374K	ENST00000366898	NM_004562.2	374	Gaa/Aaa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6031670	6031670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	90	485	0	ENST00000265849.7:c.922G>A	p.Glu308Lys	p.E308K	ENST00000265849	NM_000535.5	308	Gag/Aag																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975379	13975379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	222	376	0	ENST00000405192.2:c.508C>T	p.Pro170Ser	p.P170S	ENST00000405192	NM_001163147.1	170	Cct/Tct																																																																														
MET	4233	MSKCC	GRCh37	7	116395437	116395437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	157	373	0	ENST00000397752.3:c.1730G>A	p.Gly577Glu	p.G577E	ENST00000397752	NM_000245.2	577	gGa/gAa																																																																														
MET	4233	MSKCC	GRCh37	7	116411885	116411885	+	intron_variant	Intron	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	209	704	0	ENST00000397752.3:c.2888-18C>T		p.*963*	ENST00000397752	NM_000245.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151851390	151851390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	147	512	0	ENST00000262189.6:c.12101C>T	p.Ser4034Phe	p.S4034F	ENST00000262189	NM_170606.2	4034	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931830	68931830	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	38	474	0	ENST00000288368.4:c.260T>G	p.Phe87Cys	p.F87C	ENST00000288368	NM_024870.2	87	tTc/tGc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942732	68942732	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	37	304	0	ENST00000288368.4:c.544G>A	p.Glu182Lys	p.E182K	ENST00000288368	NM_024870.2	182	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968209	68968209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	101	495	0	ENST00000288368.4:c.1238G>A	p.Ser413Asn	p.S413N	ENST00000288368	NM_024870.2	413	aGc/aAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404537	8404537	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	24	155	0	ENST00000356435.5:c.4210G>A	p.Gly1404Arg	p.G1404R	ENST00000356435		1404	Ggg/Agg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404567	8404567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	33	187	0	ENST00000356435.5:c.4180C>T	p.His1394Tyr	p.H1394Y	ENST00000356435		1394	Cat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449821	8449821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	85	354	0	ENST00000356435.5:c.3892G>A	p.Asp1298Asn	p.D1298N	ENST00000356435		1298	Gac/Aac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500850	8500850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	84	398	0	ENST00000356435.5:c.2032G>A	p.Glu678Lys	p.E678K	ENST00000356435		678	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517925	8517925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	68	266	0	ENST00000356435.5:c.1466C>T	p.Ser489Phe	p.S489F	ENST00000356435		489	tCt/tTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518020	8518020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	78	328	0	ENST00000356435.5:c.1371G>A	p.Met457Ile	p.M457I	ENST00000356435		457	atG/atA																																																																														
TEK	7010	MSKCC	GRCh37	9	27197546	27197546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	115	470	0	ENST00000380036.4:c.1858A>G	p.Lys620Glu	p.K620E	ENST00000380036	NM_000459.3	620	Aag/Gag																																																																														
TEK	7010	MSKCC	GRCh37	9	27209136	27209136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	183	390	0	ENST00000380036.4:c.2593G>T	p.Asp865Tyr	p.D865Y	ENST00000380036	NM_000459.3	865	Gat/Tat																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87356837	87356837	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	55	323	0	ENST00000277120.3:c.1190A>T	p.Tyr397Phe	p.Y397F	ENST00000277120		397	tAt/tTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931687	39931687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	164	573	0	ENST00000378444.4:c.2912G>A	p.Gly971Asp	p.G971D	ENST00000378444	NM_001123385.1	971	gGt/gAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934433	39934433	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	150	381	0	ENST00000378444.4:c.166G>A	p.Val56Met	p.V56M	ENST00000378444	NM_001123385.1	56	Gtg/Atg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223347	53223347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	81	559	0	ENST00000375401.3:c.4012G>A	p.Glu1338Lys	p.E1338K	ENST00000375401	NM_004187.3	1338	Gag/Aag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413151	63413151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	129	481	0	ENST00000330258.3:c.16G>A	p.Asp6Asn	p.D6N	ENST00000330258	NM_152424.3	6	Gat/Aat																																																																														
ATRX	546	MSKCC	GRCh37	X	76814312	76814312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	58	225	0	ENST00000373344.5:c.6332G>A	p.Arg2111Gln	p.R2111Q	ENST00000373344	NM_000489.3	2111	cGa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937521	76937521	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	33	351	0	ENST00000373344.5:c.3227del	p.Ser1076PhefsTer42	p.S1076Ffs*42	ENST00000373344	NM_000489.3	1076	tCt/tt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	82	383	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	105	423	1	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	137	538	0	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003205	143003205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	80	387	0	ENST00000262992.4:c.2621G>A	p.Arg874Gln	p.R874Q	ENST00000262992	NM_001101669.1	874	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29554566	29554566	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	55	247	0	ENST00000358273.4:c.2351G>A	p.Trp784Ter	p.W784*	ENST00000358273	NM_001042492.2	784	tGg/tAg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735593	204735593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	99	415	0	ENST00000302823.3:c.394G>A	p.Glu132Lys	p.E132K	ENST00000302823	NM_005214.4	132	Gag/Aag																																																																														
TCF3	6929	MSKCC	GRCh37	19	1625670	1625670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	200	625	1	ENST00000344749.5:c.404C>T	p.Pro135Leu	p.P135L	ENST00000344749	NM_001136139.2	135	cCc/cTc																																																																														
BLM	641	MSKCC	GRCh37	15	91290720	91290720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs139282091		P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	58	291	0	ENST00000355112.3:c.98C>T	p.Ser33Leu	p.S33L	ENST00000355112	NM_000057.2	33	tCa/tTa																																																																														
SYK	6850	MSKCC	GRCh37	9	93637034	93637034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	118	515	0	ENST00000375746.1:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000375746	NM_001174167.1	362	Gag/Aag																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074309	8074309	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	120	481	0	ENST00000377482.5:c.350A>T	p.Lys117Ile	p.K117I	ENST00000377482	NM_018948.3	117	aAa/aTa																																																																														
SDHC	6391	MSKCC	GRCh37	1	161326518	161326518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	56	235	0	ENST00000367975.2:c.293C>T	p.Ser98Phe	p.S98F	ENST00000367975	NM_003001.3	98	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428237	49428237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	186	626	1	ENST00000301067.7:c.10463C>T	p.Ser3488Phe	p.S3488F	ENST00000301067	NM_003482.3	3488	tCc/tTc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610503	81610503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	87	376	0	ENST00000298171.2:c.2101C>G	p.Arg701Gly	p.R701G	ENST00000298171	NM_000369.2	701	Cgc/Ggc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569957	95569957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	85	418	0	ENST00000343455.3:c.3776C>T	p.Ala1259Val	p.A1259V	ENST00000343455	NM_177438.2	1259	gCc/gTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2131644	2131644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	144	710	1	ENST00000219476.3:c.3659C>T	p.Ser1220Phe	p.S1220F	ENST00000219476	NM_000548.3	1220	tCc/tTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81902868	81902868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	156	502	0	ENST00000359376.3:c.529G>A	p.Val177Met	p.V177M	ENST00000359376	NM_002661.3	177	Gtg/Atg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78867579	78867579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	141	583	1	ENST00000306801.3:c.2315C>T	p.Pro772Leu	p.P772L	ENST00000306801	NM_020761.2	772	cCc/cTc																																																																														
BCL2	596	MSKCC	GRCh37	18	60985467	60985467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	136	649	1	ENST00000333681.4:c.433G>A	p.Gly145Arg	p.G145R	ENST00000333681		145	Ggg/Agg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223641	36223641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	161	769	0	ENST00000222270.7:c.6191T>C	p.Val2064Ala	p.V2064A	ENST00000222270	NM_014727.1	2064	gTg/gCg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441470	52441470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	86	431	0	ENST00000460680.1:c.382G>A	p.Gly128Arg	p.G128R	ENST00000460680	NM_004656.3	128	Gga/Aga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920526	134920526	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	116	402	0	ENST00000398015.3:c.2341T>G	p.Ser781Ala	p.S781A	ENST00000398015	NM_004441.4	781	Tcc/Gcc																																																																														
TET2	54790	MSKCC	GRCh37	4	106157906	106157906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	115	322	0	ENST00000380013.4:c.2807G>T	p.Ser936Ile	p.S936I	ENST00000380013	NM_001127208.2	936	aGt/aTt																																																																														
ARAF	369	MSKCC	GRCh37	X	47426417	47426417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	124	696	0	ENST00000377045.4:c.760C>T	p.Pro254Ser	p.P254S	ENST00000377045	NM_001654.4	254	Ccc/Tcc																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152864439	152864439	+	synonymous_variant	Silent	SNP	C	C	T			P-0039287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	59	137	0	ENST00000406277.2:c.87G>A	p.Ala29=	p.A29=	ENST00000406277	NM_152274.4	29	gcG/gcA																																																																														
NF1	4763	MSKCC	GRCh37	17	29556367	29556367	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	257	456	1	ENST00000358273.4:c.2734C>T	p.Gln912Ter	p.Q912*	ENST00000358273	NM_001042492.2	912	Caa/Taa																																																																														
CBL	867	MSKCC	GRCh37	11	119148875	119148876	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	119	269	0	ENST00000264033.4:c.1096-1_1096delGGinsAA		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																															
TERT	7015	MSKCC	GRCh37	5	1295205	1295205	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	165	173	1				ENST00000310581	NM_198253.2																																																																																
NF1	4763	MSKCC	GRCh37	17	29556877	29556877	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	164	230	0	ENST00000358273.4:c.2875C>T	p.Gln959Ter	p.Q959*	ENST00000358273	NM_001042492.2	959	Caa/Taa																																																																														
EP300	2033	MSKCC	GRCh37	22	41545150	41545150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	316	498	0	ENST00000263253.7:c.2350C>T	p.Pro784Ser	p.P784S	ENST00000263253	NM_001429.3	784	Ccg/Tcg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718148	117718148	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	242	512	0	ENST00000368508.3:c.709C>T	p.Gln237Ter	p.Q237*	ENST00000368508	NM_002944.2	237	Caa/Taa																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29197692	29197692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	488	717	1	ENST00000240100.2:c.502C>T	p.Pro168Ser	p.P168S	ENST00000240100	NM_001394.6	168	Cca/Tca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	220	257	0				ENST00000310581	NM_198253.2																																																																																
JAK1	3716	MSKCC	GRCh37	1	65305355	65305355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	120	504	0	ENST00000342505.4:c.2773G>A	p.Glu925Lys	p.E925K	ENST00000342505	NM_002227.2	925	Gaa/Aaa																																																																														
PARP1	142	MSKCC	GRCh37	1	226558156	226558158	+	missense_variant	Missense_Mutation	ONP	GGA	GGA	AAG			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	303	542	0	ENST00000366794.5:c.2131_2133delinsCTT	p.Ser711Leu	p.S711L	ENST00000366794	NM_001618.3	711	TCC/CTT																																																																														
RET	5979	MSKCC	GRCh37	10	43612047	43612047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	349	872	1	ENST00000355710.3:c.2152G>A	p.Glu718Lys	p.E718K	ENST00000355710	NM_020975.4	718	Gaa/Aaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70411609	70411609	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	101	338	0	ENST00000373644.4:c.4283T>C	p.Val1428Ala	p.V1428A	ENST00000373644	NM_030625.2	1428	gTt/gCt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609600	81609601	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	242	546	1	ENST00000298171.2:c.1198_1199delinsTT	p.Pro400Phe	p.P400F	ENST00000298171	NM_000369.2	400	CCc/TTc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325845	30325846	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	163	347	1	ENST00000322652.5:c.2043_2044delinsTT	p.Arg682Cys	p.R682C	ENST00000322652	NM_015355.2	681	ctCCgt/ctTTgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272326	15272326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	322	738	1	ENST00000263388.2:c.6113G>A	p.Gly2038Asp	p.G2038D	ENST00000263388	NM_000435.2	2038	gGc/gAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349922	15349922	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	341	673	0	ENST00000263377.2:c.3730C>T	p.Gln1244Ter	p.Q1244*	ENST00000263377	NM_058243.2	1244	Cag/Tag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355314	15355314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	170	340	0	ENST00000263377.2:c.2309C>T	p.Pro770Leu	p.P770L	ENST00000263377	NM_058243.2	770	cCg/cTg																																																																														
AXL	558	MSKCC	GRCh37	19	41749583	41749583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	365	746	0	ENST00000301178.4:c.1508C>T	p.Ser503Phe	p.S503F	ENST00000301178	NM_021913.4	503	tCc/tTc																																																																														
AXL	558	MSKCC	GRCh37	19	41762436	41762436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	314	685	0	ENST00000301178.4:c.2116G>A	p.Gly706Arg	p.G706R	ENST00000301178	NM_021913.4	706	Gga/Aga																																																																														
ALK	238	MSKCC	GRCh37	2	29456531	29456531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	177	584	0	ENST00000389048.3:c.2387G>A	p.Gly796Glu	p.G796E	ENST00000389048	NM_004304.4	796	gGa/gAa																																																																														
REL	5966	MSKCC	GRCh37	2	61149510	61149510	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	199	311	0	ENST00000295025.8:c.1700T>C	p.Phe567Ser	p.F567S	ENST00000295025	NM_002908.2	567	tTc/tCc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872725	136872725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	112	443	0	ENST00000241393.3:c.773G>A	p.Gly258Glu	p.G258E	ENST00000241393	NM_003467.2	258	gGg/gAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944448	40944448	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	261	503	0	ENST00000373198.4:c.2054A>G	p.Lys685Arg	p.K685R	ENST00000373198	NM_133170.3	685	aAg/aGg																																																																														
TP63	8626	MSKCC	GRCh37	3	189604332	189604332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	198	372	0	ENST00000264731.3:c.1499G>A	p.Gly500Glu	p.G500E	ENST00000264731	NM_003722.4	500	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112179744	112179744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	129	299	2	ENST00000257430.4:c.8453C>T	p.Ser2818Phe	p.S2818F	ENST00000257430	NM_000038.5	2818	tCc/tTc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056122	26056123	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	300	431	0	ENST00000343677.2:c.534_535delinsAA	p.Val179Ile	p.V179I	ENST00000343677	NM_005319.3	178	aaGGtt/aaAAtt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981886	70981887	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	278	787	1	ENST00000276594.2:c.209_210delinsTT	p.Pro70Leu	p.P70L	ENST00000276594	NM_024504.3	70	cCC/cTT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923700	39923700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	481	380	0	ENST00000378444.4:c.3391C>T	p.Arg1131Trp	p.R1131W	ENST00000378444	NM_001123385.1	1131	Cgg/Tgg																																																																														
PARP1	142	MSKCC	GRCh37	1	226558157	226558157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	297	535	0	ENST00000366794.5:c.2132C>T	p.Ser711Phe	p.S711F	ENST00000366794	NM_001618.3	711	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	78	272	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	137	402	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	148	741	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	143	458	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	143	458	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022297	31022297	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	90	492	0	ENST00000375687.4:c.1786del	p.Arg596GlyfsTer107	p.R596Gfs*107	ENST00000375687	NM_015338.5	594	tgC/tg																																																																														
MPL	4352	MSKCC	GRCh37	1	43805719	43805719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	119	654	0	ENST00000372470.3:c.775G>A	p.Glu259Lys	p.E259K	ENST00000372470	NM_005373.2	259	Gaa/Aaa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975495	13975495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	74	365	0	ENST00000405192.2:c.392G>A	p.Gly131Glu	p.G131E	ENST00000405192	NM_001163147.1	131	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	143	458	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142286928	142286928	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs751709684		P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	65	363	1	ENST00000350721.4:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000350721	NM_001184.3	43	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	148	732	0	ENST00000269305.4:c.530C>T	p.Pro177Leu	p.P177L	ENST00000269305	NM_001126112.2	177	cCc/cTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55961761	55961761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	95	457	0	ENST00000263923.4:c.2800G>A	p.Glu934Lys	p.E934K	ENST00000263923	NM_002253.2	934	Gaa/Aaa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38947466	38947466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	76	327	0	ENST00000357387.3:c.4214G>A	p.Arg1405Gln	p.R1405Q	ENST00000357387	NM_152756.3	1405	cGa/cAa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139397721	139397721	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	312	798	0	ENST00000277541.6:c.5080C>T	p.Gln1694Ter	p.Q1694*	ENST00000277541	NM_017617.3	1694	Cag/Tag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956528	93956528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	74	333	0	ENST00000369303.4:c.2708C>T	p.Pro903Leu	p.P903L	ENST00000369303	NM_004440.3	903	cCc/cTc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715688	30715688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	74	329	0	ENST00000359013.4:c.1421C>T	p.Ser474Phe	p.S474F	ENST00000359013	NM_001024847.2	474	tCc/tTc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780675	9780675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	163	785	0	ENST00000377346.4:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000377346	NM_005026.3	493	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258365	16258365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	153	641	0	ENST00000375759.3:c.5630G>A	p.Arg1877Lys	p.R1877K	ENST00000375759	NM_015001.2	1877	aGg/aAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65316507	65316507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	139	433	0	ENST00000342505.4:c.1735C>T	p.Leu579Phe	p.L579F	ENST00000342505	NM_002227.2	579	Ctc/Ttc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120491093	120491095	+	frameshift_variant	Frame_Shift_Del	DEL	CAT	CAT	TA			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	113	515	1	ENST00000256646.2:c.2694_2696delinsTA	p.Glu898AspfsTer33	p.E898Dfs*33	ENST00000256646	NM_024408.3	898	gaATGt/gaTAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43733737	43733737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	118	452	0	ENST00000382044.4:c.3085G>A	p.Glu1029Lys	p.E1029K	ENST00000382044	NM_001141980.1	1029	Gag/Aag																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343620	343620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	179	804	0	ENST00000262320.3:c.2054C>T	p.Pro685Leu	p.P685L	ENST00000262320	NM_003502.3	685	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829327	72829328	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	104	651	3	ENST00000268489.5:c.7253_7254delinsTT	p.Thr2418Ile	p.T2418I	ENST00000268489	NM_006885.3	2418	aCC/aTT																																																																														
CCNE1	898	MSKCC	GRCh37	19	30314613	30314613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	75	642	0	ENST00000262643.3:c.1162C>T	p.Pro388Ser	p.P388S	ENST00000262643	NM_001238.2	388	Cct/Tct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211781	36211781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	178	899	1	ENST00000222270.7:c.1532C>T	p.Pro511Leu	p.P511L	ENST00000222270	NM_014727.1	511	cCc/cTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022298	31022300	+	frameshift_variant	Frame_Shift_Del	DEL	CCC	CCC	TT			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	90	498	0	ENST00000375687.4:c.1783_1785delinsTT	p.Pro595PhefsTer108	p.P595Ffs*108	ENST00000375687	NM_015338.5	595	CCC/TT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739001	40739001	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	125	590	0	ENST00000373198.4:c.3283G>T	p.Glu1095Ter	p.E1095*	ENST00000373198	NM_133170.3	1095	Gaa/Taa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62323117	62323118	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	127	644	2	ENST00000508582.2:c.2651_2652delinsTT	p.Ser884Phe	p.S884F	ENST00000508582		884	tCC/tTT																																																																														
ATR	545	MSKCC	GRCh37	3	142278162	142278162	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	131	501	0	ENST00000350721.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000350721	NM_001184.3	555	Cag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139739	55139739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	120	491	0	ENST00000257290.5:c.1400A>G	p.Asn467Ser	p.N467S	ENST00000257290	NM_006206.4	467	aAc/aGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268220	153268221	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	43	251	1	ENST00000281708.4:c.587_588delinsTT	p.Thr196Ile	p.T196I	ENST00000281708	NM_033632.3	196	aCC/aTT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554935	187554936	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	100	451	0	ENST00000441802.2:c.4225_4226delinsAA	p.Gly1409Lys	p.G1409K	ENST00000441802	NM_005245.3	1409	GGa/AAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630306	187630307	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	138	562	0	ENST00000441802.2:c.675_676delinsAA	p.Asp226Asn	p.D226N	ENST00000441802	NM_005245.3	225	gcGGac/gcAAac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187546	32187546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	161	633	0	ENST00000375023.3:c.1333C>T	p.Pro445Ser	p.P445S	ENST00000375023	NM_004557.3	445	Ccc/Tcc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192508	138192509	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	91	444	0	ENST00000237289.4:c.144_145delinsAA	p.Glu49Lys	p.E49K	ENST00000237289	NM_001270507.1	48	ctGGaa/ctAAaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157454242	157454242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	107	549	0	ENST00000346085.5:c.2452C>T	p.Pro818Ser	p.P818S	ENST00000346085	NM_020732.3	818	Cct/Tct																																																																														
HGF	3082	MSKCC	GRCh37	7	81358960	81358960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	102	503	0	ENST00000222390.5:c.1001C>T	p.Pro334Leu	p.P334L	ENST00000222390	NM_000601.4	334	cCt/cTt																																																																														
ABL1	25	MSKCC	GRCh37	9	133738171	133738171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	144	530	0	ENST00000318560.5:c.571C>G	p.Arg191Gly	p.R191G	ENST00000318560	NM_005157.4	191	Cgc/Ggc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120491095	120491095	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	113	510	0	ENST00000256646.2:c.2694del	p.Glu898AspfsTer33	p.E898Dfs*33	ENST00000256646	NM_024408.3	898	gaA/ga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	73	176	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	94	380	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	94	380	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572534	95572534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	34	285	0	ENST00000343455.3:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000343455	NM_177438.2	944	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108199839	108199839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	42	238	1	ENST00000278616.4:c.7181C>T	p.Ser2394Leu	p.S2394L	ENST00000278616	NM_000051.3	2394	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	129	702	0	ENST00000269305.4:c.743_744delGGinsAA	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGG/cAA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11182050	11182050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	109	580	0	ENST00000361445.4:c.6796C>T	p.Arg2266Cys	p.R2266C	ENST00000361445	NM_004958.3	2266	Cgc/Tgc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472522	88472522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55890138		P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	112	633	1	ENST00000360948.2:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000360948	NM_001012338.2	678	cGa/cAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	94	380	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458525	120458525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	140	683	0	ENST00000256646.2:c.6820C>T	p.Pro2274Ser	p.P2274S	ENST00000256646	NM_024408.3	2274	Cca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444255	49444255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	171	1007	0	ENST00000301067.7:c.3116C>T	p.Pro1039Leu	p.P1039L	ENST00000301067	NM_003482.3	1039	cCt/cTt																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1325367	1325367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	74	523	0	ENST00000381566.1:c.308C>T	p.Thr103Met	p.T103M	ENST00000381566		103	aCg/aTg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273251	198273251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	54	525	0	ENST00000335508.6:c.959G>A	p.Gly320Glu	p.G320E	ENST00000335508	NM_012433.2	320	gGa/gAa																																																																														
CDH1	999	MSKCC	GRCh37	16	68863659	68863659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	130	622	0	ENST00000261769.5:c.2398C>T	p.Arg800Cys	p.R800C	ENST00000261769	NM_004360.3	800	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132732	152132732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	98	282	0	ENST00000262189.6:c.140C>T	p.Pro47Leu	p.P47L	ENST00000262189	NM_170606.2	47	cCt/cTt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11182134	11182134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	189	775	1	ENST00000361445.4:c.6712G>A	p.Gly2238Ser	p.G2238S	ENST00000361445	NM_004958.3	2238	Ggc/Agc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307162	65307162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	77	398	0	ENST00000342505.4:c.2526G>A	p.Met842Ile	p.M842I	ENST00000342505	NM_002227.2	842	atG/atA																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468238	120468238	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	123	748	0	ENST00000256646.2:c.4201C>T	p.Gln1401Ter	p.Q1401*	ENST00000256646	NM_024408.3	1401	Cag/Tag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841421	156841421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	82	518	0	ENST00000524377.1:c.724G>A	p.Gly242Arg	p.G242R	ENST00000524377	NM_002529.3	242	Ggg/Agg																																																																														
TET1	80312	MSKCC	GRCh37	10	70333624	70333624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	76	508	0	ENST00000373644.4:c.1529C>T	p.Ala510Val	p.A510V	ENST00000373644	NM_030625.2	510	gCt/gTt																																																																														
WT1	7490	MSKCC	GRCh37	11	32413568	32413568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	90	446	0	ENST00000332351.3:c.1382C>T	p.Ser461Phe	p.S461F	ENST00000332351	NM_024426.4	461	tCc/tTc																																																																														
ATM	472	MSKCC	GRCh37	11	108121723	108121723	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	73	528	0	ENST00000278616.4:c.1531A>G	p.Ile511Val	p.I511V	ENST00000278616	NM_000051.3	511	Ata/Gta																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446108	49446108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	154	861	1	ENST00000301067.7:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000301067	NM_003482.3	453	cCt/cTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906487	32906487	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	44	349	0	ENST00000380152.3:c.872T>G	p.Leu291Arg	p.L291R	ENST00000380152		291	cTa/cGa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713292	43713292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	179	1072	1	ENST00000382044.4:c.4181G>A	p.Gly1394Glu	p.G1394E	ENST00000382044	NM_001141980.1	1394	gGg/gAg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662336	67662336	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	102	556	0	ENST00000264010.4:c.1582T>C	p.Cys528Arg	p.C528R	ENST00000264010	NM_006565.3	528	Tgc/Cgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357111	89357111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	147	730	0	ENST00000301030.4:c.523G>A	p.Ala175Thr	p.A175T	ENST00000301030	NM_001256183.1	175	Gcc/Acc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805349	89805349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	99	622	0	ENST00000389301.3:c.4201C>T	p.Leu1401Phe	p.L1401F	ENST00000389301	NM_000135.2	1401	Ctt/Ttt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882990	89882990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	32	132	2	ENST00000389301.3:c.34G>A	p.Gly12Ser	p.G12S	ENST00000389301	NM_000135.2	12	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577125	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	122	759	0	ENST00000269305.4:c.813_814delinsAA	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	271	gaGGtg/gaAAtg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075212	16075212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	87	410	0	ENST00000268712.3:c.340G>A	p.Val114Ile	p.V114I	ENST00000268712	NM_006311.3	114	Gtt/Att																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354218	15354218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	177	867	3	ENST00000263377.2:c.2662C>T	p.Pro888Ser	p.P888S	ENST00000263377	NM_058243.2	888	Cca/Tca																																																																														
AKT2	208	MSKCC	GRCh37	19	40741864	40741864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	151	752	0	ENST00000392038.2:c.1108C>T	p.Pro370Ser	p.P370S	ENST00000392038	NM_001626.4	370	Ccg/Tcg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249738	39249738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	49	386	0	ENST00000402219.2:c.1831G>A	p.Glu611Lys	p.E611K	ENST00000402219	NM_005633.3	611	Gag/Aag																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96920689	96920690	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	40	528	1	ENST00000258439.3:c.290_291delinsTT	p.Ala97Val	p.A97V	ENST00000258439	NM_001193304.2	97	gCC/gTT																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634747	158634747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	69	328	1	ENST00000263640.3:c.439C>T	p.Arg147Ter	p.R147*	ENST00000263640	NM_001105.4	147	Cga/Tga																																																																														
SRC	6714	MSKCC	GRCh37	20	36031219	36031220	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	190	762	1	ENST00000358208.4:c.1338_1339delinsAA	p.Asp447Asn	p.D447N	ENST00000358208		446	tcGGac/tcAAac																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149457806	149457806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	96	518	0	ENST00000286301.3:c.598C>T	p.Pro200Ser	p.P200S	ENST00000286301	NM_005211.3	200	Cca/Tca																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675928	30675928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	134	769	0	ENST00000376406.3:c.2428G>T	p.Val810Leu	p.V810L	ENST00000376406	NM_014641.2	810	Gtg/Ttg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32165359	32165360	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	140	806	2	ENST00000375023.3:c.4768_4769delinsTT	p.Pro1590Phe	p.P1590F	ENST00000375023	NM_004557.3	1590	CCc/TTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2974149	2974149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	138	643	0	ENST00000396946.4:c.1456G>A	p.Asp486Asn	p.D486N	ENST00000396946	NM_032415.4	486	Gac/Aac																																																																														
MYC	4609	MSKCC	GRCh37	8	128752830	128752830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	185	317	0	ENST00000377970.2:c.991C>T	p.Arg331Trp	p.R331W	ENST00000377970	NM_002467.4	331	Cgg/Tgg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98244323	98244324	+	splice_acceptor_variant	Splice_Site	DNP	CT	CT	TA			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	54	459	1	ENST00000331920.6:c.655-2_655-1delinsTA		p.X219_splice	ENST00000331920	NM_000264.3	219																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139397721	139397722	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	139	837	1	ENST00000277541.6:c.5079_5080delinsTT	p.Gln1694Ter	p.Q1694*	ENST00000277541	NM_017617.3	1693	ttCCag/ttTTag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405681	139405682	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	218	1041	0	ENST00000277541.6:c.2509_2510delinsTT	p.Pro837Phe	p.P837F	ENST00000277541	NM_017617.3	837	CCc/TTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405724	139405724	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	168	908	0	ENST00000277541.6:c.2468-1G>A		p.X823_splice	ENST00000277541	NM_017617.3	823																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793277	139793277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	168	819	0	ENST00000247668.2:c.85G>A	p.Glu29Lys	p.E29K	ENST00000247668	NM_021138.3	29	Gaa/Aaa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032582	47032583	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	136	730	1	ENST00000329236.7:c.257_258delinsAA	p.Arg86Gln	p.R86Q	ENST00000329236	NM_001204466.1	86	cGG/cAA																																																																														
ARAF	369	MSKCC	GRCh37	X	47426402	47426402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	132	780	0	ENST00000377045.4:c.745G>A	p.Gly249Ser	p.G249S	ENST00000377045	NM_001654.4	249	Ggt/Agt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226156	53226157	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	137	718	1	ENST00000375401.3:c.2692_2693delinsTT	p.Pro898Leu	p.P898L	ENST00000375401	NM_004187.3	898	CCa/TTa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53250029	53250029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	113	677	0	ENST00000375401.3:c.220G>A	p.Glu74Lys	p.E74K	ENST00000375401	NM_004187.3	74	Gag/Aag																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504138	123504138	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	54	477	0	ENST00000371139.4:c.314A>G	p.Lys105Arg	p.K105R	ENST00000371139	NM_001114937.2	105	aAg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	262	576	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231707	66231707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	90	350	1	ENST00000273854.3:c.1993G>A	p.Glu665Lys	p.E665K	ENST00000273854	NM_004439.5	665	Gaa/Aaa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920503	134920503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	224	534	0	ENST00000398015.3:c.2318C>T	p.Thr773Ile	p.T773I	ENST00000398015	NM_004441.4	773	aCc/aTc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609994	81609994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	135	256	2	ENST00000298171.2:c.1592G>A	p.Arg531Gln	p.R531Q	ENST00000298171	NM_000369.2	531	cGg/cAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	144	320	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892164	9892164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	215	421	0	ENST00000330684.3:c.2326G>A	p.Asp776Asn	p.D776N	ENST00000330684	NM_001134407.1	776	Gac/Aac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259493	89259493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	181	338	0	ENST00000336596.2:c.637C>T	p.Pro213Ser	p.P213S	ENST00000336596	NM_005233.5	213	Cca/Tca																																																																														
ABL1	25	MSKCC	GRCh37	9	133761036	133761036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1456042173		P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	316	594	3	ENST00000318560.5:c.3359C>T	p.Ser1120Leu	p.S1120L	ENST00000318560	NM_005157.4	1120	tCg/tTg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735422	204735422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	159	328	0	ENST00000302823.3:c.223C>T	p.Arg75Trp	p.R75W	ENST00000302823	NM_005214.4	75	Cgg/Tgg																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983275	149983275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	191	434	0	ENST00000253339.5:c.2983C>T	p.Arg995Cys	p.R995C	ENST00000253339		995	Cgc/Tgc																																																																														
NPM1	4869	MSKCC	GRCh37	5	170818714	170818714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	174	352	0	ENST00000296930.5:c.263C>T	p.Ser88Phe	p.S88F	ENST00000296930	NM_002520.6	88	tCc/tTc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713514	30713514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	212	417	0	ENST00000359013.4:c.914C>T	p.Pro305Leu	p.P305L	ENST00000359013	NM_001024847.2	305	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830919	72830919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	205	461	0	ENST00000268489.5:c.5662G>A	p.Glu1888Lys	p.E1888K	ENST00000268489	NM_006885.3	1888	Gaa/Aaa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2131787	2131787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	282	546	0	ENST00000219476.3:c.3802C>T	p.Arg1268Cys	p.R1268C	ENST00000219476	NM_000548.3	1268	Cgc/Tgc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066618	94066618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	166	374	0	ENST00000369303.4:c.1141C>T	p.Pro381Ser	p.P381S	ENST00000369303	NM_004440.3	381	Ccc/Tcc																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	426	779	1	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509438	106509438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	251	530	0	ENST00000359195.3:c.1432G>A	p.Gly478Arg	p.G478R	ENST00000359195	NM_002649.2	478	Gga/Aga																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741578	145741578	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	402	801	1	ENST00000428558.2:c.925C>T	p.Gln309Ter	p.Q309*	ENST00000428558	NM_004260.3	309	Cag/Tag																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362506	40362506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	224	441	1	ENST00000293328.3:c.1690C>T	p.Pro564Ser	p.P564S	ENST00000293328	NM_012448.3	564	Cca/Tca																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156523	55156523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	192	401	0	ENST00000257290.5:c.2924C>T	p.Pro975Leu	p.P975L	ENST00000257290	NM_006206.4	975	cCt/cTt																																																																														
RET	5979	MSKCC	GRCh37	10	43601944	43601944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	402	723	0	ENST00000355710.3:c.988C>T	p.Arg330Trp	p.R330W	ENST00000355710	NM_020975.4	330	Cgg/Tgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70406105	70406105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	218	492	0	ENST00000373644.4:c.3619C>T	p.Pro1207Ser	p.P1207S	ENST00000373644	NM_030625.2	1207	Cct/Tct																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163802	152163802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	174	398	1	ENST00000206249.3:c.523G>A	p.Ala175Thr	p.A175T	ENST00000206249	NM_000125.3	175	Gct/Act																																																																														
TET2	54790	MSKCC	GRCh37	4	106196349	106196349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	102	259	1	ENST00000380013.4:c.4682C>T	p.Ser1561Phe	p.S1561F	ENST00000380013	NM_001127208.2	1561	tCt/tTt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16068396	16068396	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150910818		P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	10	41	0	ENST00000268712.3:c.515C>T	p.Ser172Leu	p.S172L	ENST00000268712	NM_006311.3	172	tCa/tTa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212114	36212114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	303	514	0	ENST00000222270.7:c.1865C>T	p.Pro622Leu	p.P622L	ENST00000222270	NM_014727.1	622	cCc/cTc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164709	36164709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	351	620	0	ENST00000300305.3:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000300305		389	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108121525	108121525	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	199	338	0	ENST00000278616.4:c.1333C>T	p.Gln445Ter	p.Q445*	ENST00000278616	NM_000051.3	445	Caa/Taa																																																																														
CDH1	999	MSKCC	GRCh37	16	68835741	68835741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	236	589	1	ENST00000261769.5:c.332C>T	p.Ser111Phe	p.S111F	ENST00000261769	NM_004360.3	111	tCc/tTc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932976	49932976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	273	559	0	ENST00000296474.3:c.2968C>T	p.Pro990Ser	p.P990S	ENST00000296474	NM_002447.2	990	Cct/Tct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117707020	117707020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	134	378	0	ENST00000368508.3:c.2130G>A	p.Met710Ile	p.M710I	ENST00000368508	NM_002944.2	710	atG/atA																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741825	17741825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	122	226	0	ENST00000250003.3:c.496G>A	p.Asp166Asn	p.D166N	ENST00000250003	NM_002478.4	166	Gac/Aac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89831350	89831350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	279	501	0	ENST00000389301.3:c.2726C>T	p.Ser909Phe	p.S909F	ENST00000389301	NM_000135.2	909	tCt/tTt																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811741	102811741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	257	490	0	ENST00000307046.8:c.443G>A	p.Arg148Lys	p.R148K	ENST00000307046	NM_001111285.1	148	aGa/aAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412118	63412118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	346	391	0	ENST00000330258.3:c.1049G>A	p.Arg350Lys	p.R350K	ENST00000330258	NM_152424.3	350	aGa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	761	273	0				ENST00000310581	NM_198253.2																																																																																
NCOR1	9611	MSKCC	GRCh37	17	16068441	16068441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	33	71	0	ENST00000268712.3:c.470C>T	p.Ser157Phe	p.S157F	ENST00000268712	NM_006311.3	157	tCc/tTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554204	63554204	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	221	513	0	ENST00000307078.5:c.535C>T	p.Gln179Ter	p.Q179*	ENST00000307078	NM_004655.3	179	Cag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	29606651	29606651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	228	459	0	ENST00000389048.3:c.1229G>A	p.Gly410Glu	p.G410E	ENST00000389048	NM_004304.4	410	gGa/gAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436643	49436643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	290	508	0	ENST00000301067.7:c.5663C>T	p.Ser1888Phe	p.S1888F	ENST00000301067	NM_003482.3	1888	tCc/tTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11182068	11182068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	218	505	0	ENST00000361445.4:c.6778C>T	p.Leu2260Phe	p.L2260F	ENST00000361445	NM_004958.3	2260	Ctt/Ttt																																																																														
CD79B	974	MSKCC	GRCh37	17	62009599	62009599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	321	632	0	ENST00000392795.3:c.23C>T	p.Pro8Leu	p.P8L	ENST00000392795	NM_001039933.1	8	cCt/cTt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94124474	94124474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	82	309	0	ENST00000369303.4:c.109G>A	p.Asp37Asn	p.D37N	ENST00000369303	NM_004440.3	37	Gat/Aat																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775598	9775598	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	206	462	0	ENST00000377346.4:c.142-1G>A		p.X48_splice	ENST00000377346	NM_005026.3	48																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36932884	36932884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	308	633	1	ENST00000361632.4:c.1987C>T	p.Pro663Ser	p.P663S	ENST00000361632		663	Cca/Tca																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166644	118166644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	120	234	0	ENST00000369448.3:c.1154C>T	p.Pro385Leu	p.P385L	ENST00000369448	NM_017709.3	385	cCt/cTt																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551793	150551793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	50	74	0	ENST00000369026.2:c.214G>A	p.Asp72Asn	p.D72N	ENST00000369026	NM_021960.4	72	Gac/Aac																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740131	162740131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	185	423	1	ENST00000367921.3:c.1333C>T	p.Leu445Phe	p.L445F	ENST00000367921	NM_006182.2	445	Ctt/Ttt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163295959	163295959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	151	405	0	ENST00000271452.3:c.118C>T	p.Pro40Ser	p.P40S	ENST00000271452	NM_145697.2	40	Cca/Tca																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716236	243716236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	138	377	0	ENST00000263826.5:c.958G>A	p.Asp320Asn	p.D320N	ENST00000263826	NM_005465.4	320	Gat/Aat																																																																														
AKT3	10000	MSKCC	GRCh37	1	243801011	243801011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	102	333	0	ENST00000263826.5:c.463G>A	p.Gly155Ser	p.G155S	ENST00000263826	NM_005465.4	155	Ggt/Agt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132791	64132791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	275	559	0	ENST00000334205.4:c.925C>A	p.Leu309Met	p.L309M	ENST00000334205	NM_003942.2	309	Ctg/Atg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939813	71939814	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	322	732	1	ENST00000298229.2:c.440_441delinsTT	p.Ser147Phe	p.S147F	ENST00000298229	NM_001567.3	147	tCC/tTT																																																																														
PGR	5241	MSKCC	GRCh37	11	100962563	100962563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	174	407	0	ENST00000325455.5:c.1834G>A	p.Asp612Asn	p.D612N	ENST00000325455	NM_001202474.3	612	Gat/Aat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343883	118343883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	175	328	0	ENST00000534358.1:c.2009C>T	p.Ser670Phe	p.S670F	ENST00000534358	NM_005933.3	670	tCt/tTt																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037443	12037444	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	224	426	1	ENST00000396373.4:c.1074_1075delinsTT	p.Arg359Ter	p.R359*	ENST00000396373	NM_001987.4	358	atCCga/atTTga																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945094	31945094	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	254	577	4	ENST00000340398.3:c.7C>T	p.Arg3Ter	p.R3*	ENST00000340398	NM_001013699.2	3	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427471	49427471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	290	681	1	ENST00000301067.7:c.11017C>T	p.Leu3673Phe	p.L3673F	ENST00000301067	NM_003482.3	3673	Ctt/Ttt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865840	57865840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	157	399	0	ENST00000228682.2:c.3317C>T	p.Ala1106Val	p.A1106V	ENST00000228682	NM_005269.2	1106	gCc/gTc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856350	111856350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	42	54	1	ENST00000341259.2:c.401C>T	p.Ser134Phe	p.S134F	ENST00000341259	NM_005475.2	134	tCc/tTc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112892448	112892448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	165	385	0	ENST00000351677.2:c.606G>A	p.Met202Ile	p.M202I	ENST00000351677	NM_002834.3	202	atG/atA																																																																														
POLE	5426	MSKCC	GRCh37	12	133202713	133202713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	212	458	0	ENST00000320574.5:c.6521C>T	p.Ser2174Phe	p.S2174F	ENST00000320574	NM_006231.2	2174	tCc/tTc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557441	21557441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	218	442	0	ENST00000382592.4:c.2404G>A	p.Asp802Asn	p.D802N	ENST00000382592	NM_014572.2	802	Gat/Aat																																																																														
FLT1	2321	MSKCC	GRCh37	13	28908188	28908188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	165	359	0	ENST00000282397.4:c.2567G>A	p.Arg856Gln	p.R856Q	ENST00000282397	NM_002019.4	856	cGg/cAg																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281893	49281893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	229	488	0	ENST00000282018.3:c.940G>A	p.Asp314Asn	p.D314N	ENST00000282018	NM_020377.2	314	Gac/Aac																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337646	73337646	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	87	162	0	ENST00000377767.4:c.2070del	p.Lys690AsnfsTer47	p.K690Nfs*47	ENST00000377767	NM_014953.3	690	aaA/aa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643441	38643441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	207	419	0	ENST00000299084.4:c.911C>T	p.Ser304Leu	p.S304L	ENST00000299084	NM_152594.2	304	tCa/tTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041728	42041728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	170	318	0	ENST00000219905.7:c.5923C>T	p.Pro1975Ser	p.P1975S	ENST00000219905	NM_001164273.1	1975	Cca/Tca																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669502	88669502	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	184	352	0	ENST00000360948.2:c.1396G>A	p.Gly466Ser	p.G466S	ENST00000360948	NM_001012338.2	466	Ggt/Agt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639279	3639279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	308	730	0	ENST00000294008.3:c.4360C>T	p.Pro1454Ser	p.P1454S	ENST00000294008	NM_032444.2	1454	Ccc/Tcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3801806	3801806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	168	345	0	ENST00000262367.5:c.3700T>A	p.Tyr1234Asn	p.Y1234N	ENST00000262367	NM_004380.2	1234	Tat/Aat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3823810	3823810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	218	566	1	ENST00000262367.5:c.2405C>T	p.Ser802Phe	p.S802F	ENST00000262367	NM_004380.2	802	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943649	9943649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	272	640	0	ENST00000330684.3:c.1292G>A	p.Arg431Lys	p.R431K	ENST00000330684	NM_001134407.1	431	aGg/aAg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641514	23641514	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	201	511	0	ENST00000261584.4:c.1961T>A	p.Ile654Asn	p.I654N	ENST00000261584	NM_024675.3	654	aTt/aAt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644847	67644847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	235	500	0	ENST00000264010.4:c.112T>C	p.Cys38Arg	p.C38R	ENST00000264010	NM_006565.3	38	Tgc/Cgc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89846364	89846364	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	232	519	0	ENST00000389301.3:c.1628C>T	p.Pro543Leu	p.P543L	ENST00000389301	NM_000135.2	543	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29559894	29559894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	109	195	0	ENST00000358273.4:c.3491C>T	p.Ser1164Phe	p.S1164F	ENST00000358273	NM_001042492.2	1164	tCc/tTc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441463	40441464	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	245	639	0	ENST00000345506.4:c.34_35delinsAA	p.Gly12Lys	p.G12K	ENST00000345506	NM_003152.3	12	GGa/AAa																																																																														
YES1	7525	MSKCC	GRCh37	18	742996	742996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	190	389	0	ENST00000314574.4:c.982A>G	p.Arg328Gly	p.R328G	ENST00000314574	NM_005433.3	328	Aga/Gga																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10267073	10267073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	138	350	0	ENST00000340748.4:c.1345C>T	p.Leu449Phe	p.L449F	ENST00000340748		449	Ctt/Ttt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098437	11098437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	174	343	0	ENST00000344626.4:c.955C>T	p.Pro319Ser	p.P319S	ENST00000344626	NM_003072.3	319	Cca/Tca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302436	15302436	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	400	738	0	ENST00000263388.2:c.835C>T	p.Gln279Ter	p.Q279*	ENST00000263388	NM_000435.2	279	Cag/Tag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350014	15350015	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	375	871	0	ENST00000263377.2:c.3637_3638delinsTT	p.Pro1213Phe	p.P1213F	ENST00000263377	NM_058243.2	1213	CCc/TTc																																																																														
AXL	558	MSKCC	GRCh37	19	41727878	41727878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	361	707	0	ENST00000301178.4:c.503C>T	p.Pro168Leu	p.P168L	ENST00000301178	NM_021913.4	168	cCc/cTc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383095	42383095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	209	544	0	ENST00000221972.3:c.115C>T	p.Pro39Ser	p.P39S	ENST00000221972	NM_021601.3	39	Cca/Tca																																																																														
ERF	2077	MSKCC	GRCh37	19	42753199	42753200	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	330	721	0	ENST00000222329.4:c.1064_1065delinsTT	p.Pro355Leu	p.P355L	ENST00000222329	NM_006494.2	355	cCC/cTT																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470970	25470970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	371	636	0	ENST00000264709.3:c.791C>T	p.Pro264Leu	p.P264L	ENST00000264709	NM_175629.2	264	cCc/cTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578324	212578325	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	101	361	2	ENST00000342788.4:c.932_933delinsTT	p.Ser311Phe	p.S311F	ENST00000342788	NM_005235.2	311	tCC/tTT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212587234	212587234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	124	329	0	ENST00000342788.4:c.767G>T	p.Gly256Val	p.G256V	ENST00000342788	NM_005235.2	256	gGa/gTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419971	41419971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	261	514	1	ENST00000373198.4:c.350C>T	p.Pro117Leu	p.P117L	ENST00000373198	NM_133170.3	117	cCa/cTa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485395	57485395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	142	235	0	ENST00000371085.3:c.977C>T	p.Pro326Leu	p.P326L	ENST00000371085	NM_000516.4	326	cCc/cTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47144872	47144872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	175	386	0	ENST00000409792.3:c.4881G>A	p.Met1627Ile	p.M1627I	ENST00000409792	NM_014159.6	1627	atG/atA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163317	47163317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	153	300	0	ENST00000409792.3:c.2809C>T	p.Pro937Ser	p.P937S	ENST00000409792	NM_014159.6	937	Cct/Tct																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72897392	72897392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	225	435	0	ENST00000325599.8:c.100G>A	p.Glu34Lys	p.E34K	ENST00000325599	NM_018130.2	34	Gag/Aag																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582349	119582349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	174	261	0	ENST00000316626.5:c.1052C>T	p.Ser351Leu	p.S351L	ENST00000316626		351	tCa/tTa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825364	134825364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	184	423	0	ENST00000398015.3:c.880C>T	p.Pro294Ser	p.P294S	ENST00000398015	NM_004441.4	294	Cct/Tct																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1805521	1805521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	336	697	0	ENST00000260795.2:c.1033A>G	p.Ile345Val	p.I345V	ENST00000260795		345	Att/Gtt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143094828	143094828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	150	302	0	ENST00000262992.4:c.1316C>T	p.Ser439Phe	p.S439F	ENST00000262992	NM_001101669.1	439	tCt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295304	1295304	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	169	362	2				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112173339	112173339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	99	268	0	ENST00000257430.4:c.2048C>A	p.Thr683Asn	p.T683N	ENST00000257430	NM_000038.5	683	aCt/aAt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149447826	149447826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	258	625	2	ENST00000286301.3:c.1578G>A	p.Met526Ile	p.M526I	ENST00000286301	NM_005211.3	526	atG/atA																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163338	32163338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	446	839	0	ENST00000375023.3:c.5888C>T	p.Ser1963Phe	p.S1963F	ENST00000375023	NM_004557.3	1963	tCc/tTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163449	32163449	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	343	652	0	ENST00000375023.3:c.5777A>G	p.Asn1926Ser	p.N1926S	ENST00000375023	NM_004557.3	1926	aAc/aGc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120579	94120579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	153	301	0	ENST00000369303.4:c.472G>A	p.Gly158Ser	p.G158S	ENST00000369303	NM_004440.3	158	Ggt/Agt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001379	150001379	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	196	427	0	ENST00000253339.5:c.2225T>G	p.Leu742Arg	p.L742R	ENST00000253339		742	cTt/cGt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528450	157528450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	252	522	1	ENST00000346085.5:c.6175C>T	p.Pro2059Ser	p.P2059S	ENST00000346085	NM_020732.3	2059	Ccg/Tcg																																																																														
SMO	6608	MSKCC	GRCh37	7	128848632	128848632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	319	703	0	ENST00000249373.3:c.1297C>T	p.His433Tyr	p.H433Y	ENST00000249373	NM_005631.4	433	Cac/Tac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492910	8492910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	203	434	0	ENST00000356435.5:c.2419G>A	p.Gly807Arg	p.G807R	ENST00000356435		807	Gga/Aga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98238318	98238319	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	GG	GG	AA			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	194	345	0	ENST00000331920.6:c.1725_1726delinsTT	p.Gln576Ter	p.Q576*	ENST00000331920	NM_000264.3	575	ctCCag/ctTTag																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904961	101904961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	129	254	0	ENST00000374994.4:c.949C>T	p.His317Tyr	p.H317Y	ENST00000374994	NM_004612.2	317	Cac/Tac																																																																														
ATRX	546	MSKCC	GRCh37	X	76939186	76939187	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	183	276	0	ENST00000373344.5:c.1561_1562delinsTT	p.Pro521Phe	p.P521F	ENST00000373344	NM_000489.3	521	CCt/TTt																																																																														
GATA2	2624	MSKCC	GRCh37	3	128199975	128199976	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0040867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	312	610	0	ENST00000341105.2:c.1329_1330delinsT	p.Pro444ArgfsTer33	p.P444Rfs*33	ENST00000341105	NM_032638.4	443	ctCCcg/ctTcg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	215	763	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
ATRX	546	MSKCC	GRCh37	X	76907822	76907822	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	26	216	1	ENST00000373344.5:c.4339G>T	p.Glu1447Ter	p.E1447*	ENST00000373344	NM_000489.3	1447	Gag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	96	683	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469945	25469945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	226	838	3	ENST00000264709.3:c.1097G>A	p.Arg366His	p.R366H	ENST00000264709	NM_175629.2	366	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023589	27023590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTCCCCGAGAGGTGGCA			P-0041672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	40	521	0	ENST00000324856.7:c.700_716dup	p.Gly240ArgfsTer129	p.G240Rfs*129	ENST00000324856	NM_006015.4	232	agc/agCTCCCCGAGAGGTGGCAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690797	89690801	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTTTA	TTTTA	-			P-0041674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	66	336	0	ENST00000371953.3:c.210-6_210-2del		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
BCL2	596	MSKCC	GRCh37	18	60985730	60985730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	39	242	0	ENST00000333681.4:c.170C>A	p.Pro57His	p.P57H	ENST00000333681		57	cCc/cAc																																																																														
MYC	4609	MSKCC	GRCh37	8	128752979	128752979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	63	562	0	ENST00000377970.2:c.1140G>C	p.Gln380His	p.Q380H	ENST00000377970	NM_002467.4	380	caG/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0041732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	259	654	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	297	366	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640564	3640564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	73	826	1	ENST00000294008.3:c.3075G>T	p.Trp1025Cys	p.W1025C	ENST00000294008	NM_032444.2	1025	tgG/tgT																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032071	26032071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	26	397	0	ENST00000244661.2:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000244661	NM_003537.3	73	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057874	27057874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	265	794	0	ENST00000324856.7:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000324856	NM_006015.4	528	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29676218	29676219	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0041854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	64	365	0	ENST00000358273.4:c.7271_7272del	p.Arg2424LysfsTer3	p.R2424Kfs*3	ENST00000358273	NM_001042492.2	2424	AGa/a																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38942978	38942978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	59	322	0	ENST00000357387.3:c.5009G>A	p.Arg1670Gln	p.R1670Q	ENST00000357387	NM_152756.3	1670	cGg/cAg																																																																														
MGA	23269	MSKCC	GRCh37	15	42052684	42052684	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0041854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	172	593	0	ENST00000219905.7:c.7355T>A	p.Leu2452Ter	p.L2452*	ENST00000219905	NM_001164273.1	2452	tTa/tAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	143	353	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	76	351	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	90	442	1	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	73	302	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	227	736	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	185	710	1	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	224	683	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	74	320	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	25	41	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	38	198	1	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857895	9857895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	196	593	2	ENST00000330684.3:c.3506G>A	p.Arg1169Gln	p.R1169Q	ENST00000330684	NM_001134407.1	1169	cGg/cAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165213	47165213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	61	269	0	ENST00000409792.3:c.913delA	p.Thr305GlnfsTer35	p.T305Qfs*35	ENST00000409792	NM_014159.6	305	Aca/ca																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	52	304	1	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	83	335	0	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	147	543	1	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
EP300	2033	MSKCC	GRCh37	22	41545939	41545939	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	247	736	0	ENST00000263253.7:c.2554C>T	p.Gln852Ter	p.Q852*	ENST00000263253	NM_001429.3	852	Cag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	255	747	5	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683223	88683223	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113849804		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	111	498	0	ENST00000372037.3:c.1433G>A	p.Arg478His	p.R478H	ENST00000372037	NM_004329.2	478	cGt/cAt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553588	106553588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	134	398	0	ENST00000369096.4:c.1553C>T	p.Thr518Met	p.T518M	ENST00000369096	NM_001198.3	518	aCg/aTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057744	180057744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138831198		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	208	717	0	ENST00000261937.6:c.211G>A	p.Gly71Arg	p.G71R	ENST00000261937	NM_182925.4	71	Gga/Aga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	149	545	0	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246532	41246532	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	113	630	4	ENST00000357654.3:c.1016del	p.Lys339ArgfsTer2	p.K339Rfs*2	ENST00000357654	NM_007294.3	339	aAg/ag																																																																														
CIC	23152	MSKCC	GRCh37	19	42795609	42795609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	212	795	2	ENST00000575354.2:c.2694del	p.Ala900ProfsTer24	p.A900Pfs*24	ENST00000575354	NM_015125.3	897	Ccc/cc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332152	70332153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	61	227	3	ENST00000373644.4:c.65dup	p.Lys23GlufsTer37	p.K23Efs*37	ENST00000373644	NM_030625.2	19	-/A																																																																														
B2M	567	MSKCC	GRCh37	15	45003782	45003782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	170	457	0	ENST00000558401.1:c.38T>C	p.Leu13Pro	p.L13P	ENST00000558401	NM_004048.2	13	cTc/cCc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	166	621	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733375	85733377	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	106	430	0	ENST00000370580.1:c.635_637del	p.Glu212del	p.E212del	ENST00000370580	NM_003921.4	212	gAAGga/gga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399278	139399278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	273	666	2	ENST00000277541.6:c.4865G>A	p.Arg1622His	p.R1622H	ENST00000277541	NM_017617.3	1622	cGc/cAc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	189	405	4	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	147	562	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686962	37686962	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	175	525	1	ENST00000447079.4:c.3871del	p.Gln1291ArgfsTer3	p.Q1291Rfs*3	ENST00000447079	NM_015083.1	1289	gCc/gc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658869	3658869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	129	570	0	ENST00000294008.3:c.97G>A	p.Asp33Asn	p.D33N	ENST00000294008	NM_032444.2	33	Gac/Aac																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513037	106513037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	57	211	0	ENST00000359195.3:c.2051G>A	p.Arg684His	p.R684H	ENST00000359195	NM_002649.2	684	cGt/cAt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271304	18271304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	240	722	1	ENST00000222254.8:c.346G>A	p.Glu116Lys	p.E116K	ENST00000222254	NM_005027.3	116	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732820	44732820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	76	283	0	ENST00000377967.4:c.23T>C	p.Leu8Pro	p.L8P	ENST00000377967	NM_021140.2	8	cTc/cCc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434356	121434356	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	193	667	3	ENST00000257555.6:c.1124del	p.Gly375AlafsTer9	p.G375Afs*9	ENST00000257555		374	Ggg/gg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9776086	9776086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	197	715	4	ENST00000377346.4:c.550C>T	p.Arg184Trp	p.R184W	ENST00000377346	NM_005026.3	184	Cgg/Tgg																																																																														
RAC2	5880	MSKCC	GRCh37	22	37637694	37637694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	183	694	1	ENST00000249071.6:c.40G>A	p.Val14Met	p.V14M	ENST00000249071	NM_002872.4	14	Gtg/Atg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	107	352	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619031	37619031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	185	612	0	ENST00000447079.4:c.707G>A	p.Ser236Asn	p.S236N	ENST00000447079	NM_015083.1	236	aGc/aAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436102	49436102	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	65	418	0	ENST00000301067.7:c.5879del	p.Gly1960AlafsTer87	p.G1960Afs*87	ENST00000301067	NM_003482.3	1960	gGc/gc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121604	2121604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	225	758	0	ENST00000219476.3:c.1933G>A	p.Val645Ile	p.V645I	ENST00000219476	NM_000548.3	645	Gtc/Atc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2189772	2189772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	280	761	0	ENST00000398665.3:c.242C>T	p.Ala81Val	p.A81V	ENST00000398665	NM_032482.2	81	gCc/gTc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163318754	163318755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	98	349	0	ENST00000271452.3:c.1150dup	p.Arg384LysfsTer6	p.R384Kfs*6	ENST00000271452	NM_145697.2	382	gaa/gAaa																																																																														
ABL1	25	MSKCC	GRCh37	9	133760724	133760724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	240	885	0	ENST00000318560.5:c.3047G>A	p.Arg1016His	p.R1016H	ENST00000318560	NM_005157.4	1016	cGc/cAc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605204	46605204	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	102	335	6	ENST00000263734.3:c.1421G>C	p.Ser474Thr	p.S474T	ENST00000263734	NM_001430.4	474	aGc/aCc																																																																														
CBFB	865	MSKCC	GRCh37	16	67132621	67132623	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	92	474	0	ENST00000412916.2:c.508_510delCAA	p.Gln170del	p.Q170del	ENST00000412916		168	agACAa/aga																																																																														
DDR2	4921	MSKCC	GRCh37	1	162748369	162748369	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	29	293	0	ENST00000367921.3:c.2284-1G>T		p.X762_splice	ENST00000367921	NM_006182.2	762																																																																															
CDKN2B	1030	MSKCC	GRCh37	9	22006078	22006078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	179	385	0	ENST00000276925.6:c.325C>T	p.Arg109Cys	p.R109C	ENST00000276925	NM_004936.3	109	Cgc/Tgc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974816	15974816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	42	372	0	ENST00000268712.3:c.4059G>C	p.Glu1353Asp	p.E1353D	ENST00000268712	NM_006311.3	1353	gaG/gaC																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38272356	38272356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	160	596	1	ENST00000425967.3:c.2011G>A	p.Ala671Thr	p.A671T	ENST00000425967	NM_001174067.1	671	Gca/Aca																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317061	11317061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	162	562	1	ENST00000361445.4:c.433G>A	p.Val145Met	p.V145M	ENST00000361445	NM_004958.3	145	Gtg/Atg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598307	28598307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	265	828	1	ENST00000253063.3:c.279C>A	p.Phe93Leu	p.F93L	ENST00000253063	NM_031459.4	93	ttC/ttA																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276732	115276732	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	81	305	0	ENST00000438362.2:c.727T>G	p.Phe243Val	p.F243V	ENST00000438362	NM_001242891.1	243	Ttt/Gtt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162748368	162748369	+	splice_acceptor_variant	Splice_Site	DNP	AG	AG	GT			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	29	292	1	ENST00000367921.3:c.2284-2_2284-1delinsGT		p.X762_splice	ENST00000367921	NM_006182.2	762																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981563	201981565	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TGG	TGG	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	301	805	0	ENST00000359651.3:c.478+1_478+3del		p.X160_splice	ENST00000359651		160																																																																															
ELF3	1999	MSKCC	GRCh37	1	201981825	201981825	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	112	844	0	ENST00000359651.3:c.536A>G	p.Tyr179Cys	p.Y179C	ENST00000359651		179	tAc/tGc																																																																														
IL10	3586	MSKCC	GRCh37	1	206944287	206944287	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs150423829		P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	88	474	0	ENST00000423557.1:c.343A>T	p.Asn115Tyr	p.N115Y	ENST00000423557	NM_000572.2	115	Aac/Tac																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246670369	246670369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	113	408	0	ENST00000388985.4:c.151C>T	p.Arg51Cys	p.R51C	ENST00000388985		51	Cgc/Tgc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851679	63851679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	174	527	1	ENST00000279873.7:c.2461del	p.His821IlefsTer61	p.H821Ifs*61	ENST00000279873	NM_032199.2	819	ctC/ct																																																																														
TET1	80312	MSKCC	GRCh37	10	70333879	70333879	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	72	350	0	ENST00000373644.4:c.1784A>T	p.Glu595Val	p.E595V	ENST00000373644	NM_030625.2	595	gAa/gTa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710984	114710984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	185	380	0	ENST00000543371.1:c.208C>T	p.Pro70Ser	p.P70S	ENST00000543371	NM_001198531.1	70	Cct/Tct																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589630	69589630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	55	104	0	ENST00000168712.1:c.223G>A	p.Asp75Asn	p.D75N	ENST00000168712	NM_002007.2	75	Gac/Aac																																																																														
ATM	472	MSKCC	GRCh37	11	108186814	108186814	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	79	417	0	ENST00000278616.4:c.6172T>A	p.Ser2058Thr	p.S2058T	ENST00000278616	NM_000051.3	2058	Tca/Aca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344627	118344627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	46	420	0	ENST00000534358.1:c.2753G>A	p.Gly918Asp	p.G918D	ENST00000534358	NM_005933.3	918	gGt/gAt																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025564	1025564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	223	717	0	ENST00000358495.3:c.811C>T	p.Arg271Trp	p.R271W	ENST00000358495	NM_134424.2	271	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489040	56489040	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	125	411	0	ENST00000267101.3:c.1860-1G>T		p.X620_splice	ENST00000267101	NM_001982.3	620																																																																															
GLI1	2735	MSKCC	GRCh37	12	57858642	57858642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	134	521	0	ENST00000228682.2:c.380G>A	p.Gly127Asp	p.G127D	ENST00000228682	NM_005269.2	127	gGc/gAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133240971	133240971	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	150	581	0	ENST00000320574.5:c.2546T>C	p.Leu849Pro	p.L849P	ENST00000320574	NM_006231.2	849	cTg/cCg																																																																														
BLM	641	MSKCC	GRCh37	15	91303446	91303446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	104	358	0	ENST00000355112.3:c.1157T>C	p.Ile386Thr	p.I386T	ENST00000355112	NM_000057.2	386	aTt/aCt																																																																														
BLM	641	MSKCC	GRCh37	15	91347480	91347480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	137	509	0	ENST00000355112.3:c.3642G>T	p.Met1214Ile	p.M1214I	ENST00000355112	NM_000057.2	1214	atG/atT																																																																														
TSC2	7249	MSKCC	GRCh37	16	2110806	2110806	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	209	634	0	ENST00000219476.3:c.1111C>T	p.Gln371Ter	p.Q371*	ENST00000219476	NM_000548.3	371	Cag/Tag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658869	3658870	+	missense_variant	Missense_Mutation	DNP	CT	CT	TC			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	129	576	0	ENST00000294008.3:c.96_97delinsGA	p.Asp33Asn	p.D33N	ENST00000294008	NM_032444.2	32	gaAGac/gaGAac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808042	3808042	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	48	340	0	ENST00000262367.5:c.3377T>A	p.Phe1126Tyr	p.F1126Y	ENST00000262367	NM_004380.2	1126	tTt/tAt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646303	23646303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	151	578	1	ENST00000261584.4:c.1564C>A	p.Pro522Thr	p.P522T	ENST00000261584	NM_024675.3	522	Cca/Aca																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836979	89836979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	230	650	2	ENST00000389301.3:c.2215C>A	p.Pro739Thr	p.P739T	ENST00000389301	NM_000135.2	739	Ccg/Acg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131333	17131333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	250	772	0	ENST00000285071.4:c.119G>T	p.Gly40Val	p.G40V	ENST00000285071	NM_144997.5	40	gGc/gTc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372032	45372032	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	98	401	0	ENST00000262160.6:c.1135+2T>C		p.X379_splice	ENST00000262160	NM_005901.5	379																																																																															
UPF1	5976	MSKCC	GRCh37	19	18961574	18961574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	185	608	1	ENST00000262803.5:c.707G>A	p.Arg236His	p.R236H	ENST00000262803	NM_002911.3	236	cGc/cAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50921115	50921115	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	197	581	0	ENST00000440232.2:c.3235T>A	p.Phe1079Ile	p.F1079I	ENST00000440232	NM_002691.3	1079	Ttc/Atc																																																																														
ALK	238	MSKCC	GRCh37	2	29754856	29754856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	152	424	0	ENST00000389048.3:c.1079G>A	p.Arg360Lys	p.R360K	ENST00000389048	NM_004304.4	360	aGg/aAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877375	40877375	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	161	527	0	ENST00000373198.4:c.2321T>G	p.Leu774Arg	p.L774R	ENST00000373198	NM_133170.3	774	cTc/cGc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62324156	62324158	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGG	AGG	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	153	600	0	ENST00000508582.2:c.2728_2730del		p.X910_splice	ENST00000508582		910																																																																															
TMPRSS2	7113	MSKCC	GRCh37	21	42842589	42842590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	244	652	0	ENST00000398585.3:c.1267dup	p.Ala423GlyfsTer21	p.A423Gfs*21	ENST00000398585	NM_001135099.1	423	gcc/gGcc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641731	12641731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	153	489	0	ENST00000251849.4:c.910G>T	p.Gly304Cys	p.G304C	ENST00000251849	NM_002880.3	304	Ggc/Tgc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275240	41275240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	123	327	0	ENST00000349496.5:c.1406G>A	p.Arg469His	p.R469H	ENST00000349496	NM_001904.3	469	cGt/cAt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442539	52442539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	103	488	0	ENST00000460680.1:c.206C>T	p.Thr69Met	p.T69M	ENST00000460680	NM_004656.3	69	aCg/aTg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431007	181431007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	227	712	0	ENST00000325404.1:c.859G>A	p.Ala287Thr	p.A287T	ENST00000325404	NM_003106.3	287	Gcc/Acc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182681778	182681778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	127	445	0	ENST00000292782.4:c.280G>A	p.Ala94Thr	p.A94T	ENST00000292782	NM_020640.2	94	Gca/Aca																																																																														
BCL6	604	MSKCC	GRCh37	3	187447621	187447621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	142	652	2	ENST00000232014.4:c.572C>T	p.Pro191Leu	p.P191L	ENST00000232014	NM_001130845.1	191	cCg/cTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189590666	189590666	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	87	421	0	ENST00000264731.3:c.1231T>A	p.Tyr411Asn	p.Y411N	ENST00000264731	NM_003722.4	411	Tat/Aat																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902622	1902622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	230	713	0	ENST00000382891.5:c.241G>A	p.Asp81Asn	p.D81N	ENST00000382891	NM_133335.3	81	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521105	187521105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	137	439	1	ENST00000441802.2:c.12050G>A	p.Cys4017Tyr	p.C4017Y	ENST00000441802	NM_005245.3	4017	tGc/tAc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31409427	31409427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	81	348	0	ENST00000344624.3:c.3680C>T	p.Ala1227Val	p.A1227V	ENST00000344624		1227	gCg/gTg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56170866	56170866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	74	251	0	ENST00000399503.3:c.1694G>A	p.Gly565Glu	p.G565E	ENST00000399503	NM_005921.1	565	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112170646	112170646	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	68	246	0	ENST00000257430.4:c.1744-2A>T		p.X582_splice	ENST00000257430	NM_000038.5	582																																																																															
RAD50	10111	MSKCC	GRCh37	5	131953766	131953766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	47	226	0	ENST00000265335.6:c.3169C>T	p.His1057Tyr	p.H1057Y	ENST00000265335		1057	Cat/Tat																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158725	26158725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	117	439	0	ENST00000289316.2:c.328C>T	p.His110Tyr	p.H110Y	ENST00000289316	NM_138720.2	110	Cac/Tac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163228	32163228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	197	881	0	ENST00000375023.3:c.5998G>A	p.Glu2000Lys	p.E2000K	ENST00000375023	NM_004557.3	2000	Gag/Aag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168946	32168946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	211	875	0	ENST00000375023.3:c.4087G>A	p.Ala1363Thr	p.A1363T	ENST00000375023	NM_004557.3	1363	Gca/Aca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242488	55242488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	109	409	0	ENST00000275493.2:c.2258C>T	p.Pro753Leu	p.P753L	ENST00000275493	NM_005228.3	753	cCg/cTg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148515137	148515137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	162	447	0	ENST00000320356.2:c.1072C>A	p.Arg358Ser	p.R358S	ENST00000320356	NM_004456.4	358	Cgc/Agc																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205015	38205016	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	147	572	0	ENST00000317025.8:c.674dup	p.Asn225LysfsTer2	p.N225Kfs*2	ENST00000317025	NM_023034.1	225	aat/aaAt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964415	70964415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	134	426	2	ENST00000276594.2:c.1613G>A	p.Arg538His	p.R538H	ENST00000276594	NM_024504.3	538	cGt/cAt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090566	5090566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	88	284	0	ENST00000381652.3:c.2882G>A	p.Cys961Tyr	p.C961Y	ENST00000381652	NM_004972.3	961	tGc/tAc																																																																														
TEK	7010	MSKCC	GRCh37	9	27203007	27203007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	131	513	0	ENST00000380036.4:c.2099A>G	p.Lys700Arg	p.K700R	ENST00000380036	NM_000459.3	700	aAg/aGg																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139563044	139563044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	241	791	0	ENST00000308874.7:c.116C>A	p.Pro39His	p.P39H	ENST00000308874		39	cCt/cAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933540	39933540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	204	350	0	ENST00000378444.4:c.1059del	p.Tyr354ThrfsTer24	p.Y354Tfs*24	ENST00000378444	NM_001123385.1	353	acC/ac																																																																														
DDR2	4921	MSKCC	GRCh37	1	162748368	162748368	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0041855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	29	286	0	ENST00000367921.3:c.2284-2A>G		p.X762_splice	ENST00000367921	NM_006182.2	762																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	44	482	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0041900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	84	923	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	70	429	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	70	429	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	70	429	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216516	36216516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	196	1028	0	ENST00000222270.7:c.3779G>A	p.Arg1260His	p.R1260H	ENST00000222270	NM_014727.1	1260	cGt/cAt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637711	52637711	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	31	351	1	ENST00000394830.3:c.2605C>T	p.Gln869Ter	p.Q869*	ENST00000394830	NM_018313.4	869	Cag/Tag																																																																														
VHL	7428	MSKCC	GRCh37	3	10183692	10183693	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	53	658	0	ENST00000256474.2:c.163dup	p.Glu55GlyfsTer77	p.E55Gfs*77	ENST00000256474	NM_000551.3	54	atg/atGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	151	151	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0041970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	222	427	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95597910	95597910	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0041970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	142	423	0	ENST00000343455.3:c.374C>G	p.Ser125Ter	p.S125*	ENST00000343455	NM_177438.2	125	tCa/tGa																																																																														
EP300	2033	MSKCC	GRCh37	22	41552995	41553257	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAATATCTCTGTAAACTAATATTTAAAGAAGTGATGGACATCAGTCACCTCTTGGGGAATATAGACAGGCCAGAAACTAAAACACTGCCTGGAAAATTAACAATGATAATGGATGATACTCCATCTCCCGTAAAAATAGTGAGACTTGAGTAATGTTTGATGTCACTTGTCTTTCTAGGATTACTTTGATATTGTGAAGAGCCCCATGGATCTTTCTACCATTAAGAGGAAGTTAGACACTGGACAGTATCAGGAGCCCTGGC	TAATATCTCTGTAAACTAATATTTAAAGAAGTGATGGACATCAGTCACCTCTTGGGGAATATAGACAGGCCAGAAACTAAAACACTGCCTGGAAAATTAACAATGATAATGGATGATACTCCATCTCCCGTAAAAATAGTGAGACTTGAGTAATGTTTGATGTCACTTGTCTTTCTAGGATTACTTTGATATTGTGAAGAGCCCCATGGATCTTTCTACCATTAAGAGGAAGTTAGACACTGGACAGTATCAGGAGCCCTGGC	-			P-0041970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	104	46	0	ENST00000263253.7:c.3262-178_3346del		p.X1088_splice	ENST00000263253	NM_001429.3	1088																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922747	44922751	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAG	CTCAG	-			P-0041970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	167	234	0	ENST00000377967.4:c.1608_1612del	p.Ser537LeufsTer14	p.S537Lfs*14	ENST00000377967	NM_021140.2	536	aaCTCAGtc/aatc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	442	759	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46509413	46509413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	293	485	0	ENST00000262741.5:c.1318C>T	p.His440Tyr	p.H440Y	ENST00000262741	NM_003629.3	440	Cac/Tac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912519	32912519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	137	268	0	ENST00000380152.3:c.4031del	p.Asn1344MetfsTer30	p.N1344Mfs*30	ENST00000380152		1343	Aaa/aa																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647679	2647679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	255	469	0	ENST00000342085.4:c.1582C>G	p.Pro528Ala	p.P528A	ENST00000342085	NM_002613.4	528	Ccc/Gcc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280726	41280726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	197	440	0	ENST00000349496.5:c.2239G>A	p.Asp747Asn	p.D747N	ENST00000349496	NM_001904.3	747	Gac/Aac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539942	187539957	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTTGCTCGAAATTG	TGGTTGCTCGAAATTG	-			P-0041985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	140	319	0	ENST00000441802.2:c.7783_7798del	p.Gln2595AsnfsTer4	p.Q2595Nfs*4	ENST00000441802	NM_005245.3	2595	CAATTTCGAGCAACCAaa/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	49	310	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	166	536	0	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	166	536	0	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573563	48573564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	20	214	0	ENST00000342988.3:c.153dupA	p.Asp52ArgfsTer2	p.D52Rfs*2	ENST00000342988	NM_005359.5	49	-/A																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284969	15284969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	199	743	0	ENST00000263388.2:c.4646C>T	p.Ala1549Val	p.A1549V	ENST00000263388	NM_000435.2	1549	gCg/gTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653782	89653782	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0041989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	41	189	0	ENST00000371953.3:c.80A>C	p.Tyr27Ser	p.Y27S	ENST00000371953	NM_000314.4	27	tAt/tCt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858431	9858431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	146	452	0	ENST00000330684.3:c.2970G>C	p.Glu990Asp	p.E990D	ENST00000330684	NM_001134407.1	990	gaG/gaC																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14031675	14031675	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	44	321	0	ENST00000311895.7:c.1864G>T	p.Ala622Ser	p.A622S	ENST00000311895	NM_005236.2	622	Gct/Tct																																																																														
KDR	3791	MSKCC	GRCh37	4	55961110	55961110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	149	547	0	ENST00000263923.4:c.2830C>T	p.Arg944Ter	p.R944*	ENST00000263923	NM_002253.2	944	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	13	572	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																														
ATM	472	MSKCC	GRCh37	11	108218084	108218084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0042099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	35	236	0	ENST00000278616.4:c.8663T>C	p.Ile2888Thr	p.I2888T	ENST00000278616	NM_000051.3	2888	aTa/aCa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602688	10602688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	341	699	1	ENST00000171111.5:c.890G>T	p.Cys297Phe	p.C297F	ENST00000171111	NM_203500.1	297	tGc/tTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197885	123197885	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0042099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	77	158	0	ENST00000218089.9:c.2009A>C	p.Glu670Ala	p.E670A	ENST00000218089	NM_001042749.1	670	gAa/gCa																																																																														
STK40	83931	MSKCC	GRCh37	1	36807376	36807376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	258	576	0	ENST00000373129.3:c.1288C>G	p.Gln430Glu	p.Q430E	ENST00000373129	NM_032017.1	430	Cag/Gag																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63810698	63810698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	180	271	0	ENST00000279873.7:c.785G>C	p.Arg262Thr	p.R262T	ENST00000279873	NM_032199.2	262	aGa/aCa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858792	9858792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	23	184	0	ENST00000330684.3:c.2609G>A	p.Cys870Tyr	p.C870Y	ENST00000330684	NM_001134407.1	870	tGc/tAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29508802	29508803	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GGTAAGGATAC			P-0042099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	70	272	0	ENST00000358273.4:c.730+1_730+11dup		p.-243fs	ENST00000358273	NM_001042492.2	243	-/GGTAAGGATAC																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78858861	78858861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0042099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	191	726	0	ENST00000306801.3:c.1896G>C	p.Glu632Asp	p.E632D	ENST00000306801	NM_020761.2	632	gaG/gaC																																																																														
TET2	54790	MSKCC	GRCh37	4	106157480	106157481	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0042099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	115	228	0	ENST00000380013.4:c.2383dup	p.Ser795LysfsTer7	p.S795Kfs*7	ENST00000380013	NM_001127208.2	794	tca/tcAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226193	53226193	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0042099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	249	299	0	ENST00000375401.3:c.2656G>T	p.Glu886Ter	p.E886*	ENST00000375401	NM_004187.3	886	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0042104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	375	754	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945665	151945665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0042104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	143	540	0	ENST00000262189.6:c.1854G>T	p.Gln618His	p.Q618H	ENST00000262189	NM_170606.2	618	caG/caT																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			826	52	611	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	39	369	1	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	49039206	49039206	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	78	509	0	ENST00000267163.4:c.2284del	p.Gln762ArgfsTer3	p.Q762Rfs*3	ENST00000267163	NM_000321.2	762	Cag/ag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801058	1801058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1203	128	939	1	ENST00000260795.2:c.187C>T	p.Pro63Ser	p.P63S	ENST00000260795		63	Ccg/Tcg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023171	27023172	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0025678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	40	110	0	ENST00000324856.7:c.278_279del	p.Gly93AlafsTer17	p.G93Afs*17	ENST00000324856	NM_006015.4	93	GGg/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023178	27023186	+	inframe_deletion	In_Frame_Del	DEL	GCGCGGAGC	GCGCGGAGC	-			P-0025678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			168	39	126	0	ENST00000324856.7:c.284_292del	p.Gly95_Pro98delinsAla	p.G95_P98delinsA	ENST00000324856	NM_006015.4	95	gGCGCGGAGCcg/gcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	369	515	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313222	30313222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	52	546	0	ENST00000262643.3:c.916C>T	p.His306Tyr	p.H306Y	ENST00000262643	NM_001238.2	306	Cat/Tat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858370	9858370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	55	435	0	ENST00000330684.3:c.3031C>T	p.Arg1011Trp	p.R1011W	ENST00000330684	NM_001134407.1	1011	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097101	11097101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	56	762	1	ENST00000344626.4:c.592G>A	p.Asp198Asn	p.D198N	ENST00000344626	NM_003072.3	198	Gac/Aac																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932055	36932055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	155	629	0	ENST00000361632.4:c.2414del	p.Pro805GlnfsTer45	p.P805Qfs*45	ENST00000361632		805	cCa/ca																																																																														
MPL	4352	MSKCC	GRCh37	1	43804989	43804989	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	80	411	0	ENST00000372470.3:c.439C>G	p.Pro147Ala	p.P147A	ENST00000372470	NM_005373.2	147	Cca/Gca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117746745	117746746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	113	325	0	ENST00000368508.3:c.74dup	p.Gln26AlafsTer7	p.Q26Afs*7	ENST00000368508	NM_002944.2	25	gtg/gtTg																																																																														
AR	367	MSKCC	GRCh37	X	66766381	66766381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	74	99	0	ENST00000374690.3:c.1393G>T	p.Gly465Cys	p.G465C	ENST00000374690	NM_000044.3	465	Ggc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	124	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962854	2962854	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	293	759	2	ENST00000396946.4:c.2054delG	p.Gly685AlafsTer31	p.G685Afs*31	ENST00000396946	NM_032415.4	685	gGc/gc																																																																														
ATR	545	MSKCC	GRCh37	3	142215258	142215258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	146	503	0	ENST00000350721.4:c.5843G>T	p.Gly1948Val	p.G1948V	ENST00000350721	NM_001184.3	1948	gGg/gTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028883	47028883	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	130	570	0	ENST00000329236.7:c.187G>T	p.Glu63Ter	p.E63*	ENST00000329236	NM_001204466.1	63	Gag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199325	16199325	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	38	286	0	ENST00000375759.3:c.98A>G	p.Glu33Gly	p.E33G	ENST00000375759	NM_015001.2	33	gAa/gGa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426751	121426751	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	164	658	0	ENST00000257555.6:c.442C>G	p.Leu148Val	p.L148V	ENST00000257555		148	Ctc/Gtc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865753	56865753	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	107	214	0	ENST00000308159.5:c.1086-1G>T		p.X362_splice	ENST00000308159	NM_014669.4	362																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48575113	48575113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	45	346	0	ENST00000342988.3:c.307G>A	p.Asp103Asn	p.D103N	ENST00000342988	NM_005359.5	103	Gat/Aat																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353828	15353828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	161	469	0	ENST00000263377.2:c.3052C>A	p.Gln1018Lys	p.Q1018K	ENST00000263377	NM_058243.2	1018	Cag/Aag																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47604202	47604202	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	52	360	1	ENST00000263735.4:c.541A>G	p.Ile181Val	p.I181V	ENST00000263735	NM_002354.2	181	Atc/Gtc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024355	31024355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	151	536	0	ENST00000375687.4:c.3840C>G	p.Ile1280Met	p.I1280M	ENST00000375687	NM_015338.5	1280	atC/atG																																																																														
HGF	3082	MSKCC	GRCh37	7	81331961	81331961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	35	264	0	ENST00000222390.5:c.2123G>T	p.Arg708Leu	p.R708L	ENST00000222390	NM_000601.4	708	cGa/cTa																																																																														
HGF	3082	MSKCC	GRCh37	7	81332021	81332021	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	85	316	0	ENST00000222390.5:c.2063T>G	p.Leu688Arg	p.L688R	ENST00000222390	NM_000601.4	688	cTt/cGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	39	215	0				ENST00000310581	NM_198253.2																																																																																
TGFBR1	7046	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	51	361	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521544	8521544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	97	514	1	ENST00000356435.5:c.694C>T	p.Arg232Cys	p.R232C	ENST00000356435		232	Cgc/Tgc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741608	145741608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	117	1026	0	ENST00000428558.2:c.895C>T	p.Pro299Ser	p.P299S	ENST00000428558	NM_004260.3	299	Cca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428005	49428005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	176	778	0	ENST00000301067.7:c.10585G>C	p.Glu3529Gln	p.E3529Q	ENST00000301067	NM_003482.3	3529	Gag/Cag																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94197348	94197348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	38	381	0	ENST00000323929.3:c.1156G>A	p.Val386Met	p.V386M	ENST00000323929	NM_005591.3	386	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427997	49427997	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	166	761	0	ENST00000301067.7:c.10593G>C	p.Gln3531His	p.Q3531H	ENST00000301067	NM_003482.3	3531	caG/caC																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805448	46805448	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	213	949	1	ENST00000290295.7:c.508C>T	p.Gln170Ter	p.Q170*	ENST00000290295	NM_006361.5	170	Cag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221956	1221956	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	129	798	0	ENST00000326873.7:c.871G>C	p.Glu291Gln	p.E291Q	ENST00000326873	NM_000455.4	291	Gag/Cag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913554	39913554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	86	594	0	ENST00000378444.4:c.4774G>A	p.Asp1592Asn	p.D1592N	ENST00000378444	NM_001123385.1	1592	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	258	759	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	41	364	4	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346465	89346465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	86	805	0	ENST00000301030.4:c.6485C>T	p.Pro2162Leu	p.P2162L	ENST00000301030	NM_001256183.1	2162	cCt/cTt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021368	31021412	+	inframe_deletion	In_Frame_Del	DEL	CTGACCCAGCAGGGCTGAGCAGTCCCCATCTGCCAGGCACATCCT	CTGACCCAGCAGGGCTGAGCAGTCCCCATCTGCCAGGCACATCCT	-			P-0041658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	55	605	0	ENST00000375687.4:c.1370_1414del	p.Asp457_Ser471del	p.D457_S471del	ENST00000375687	NM_015338.5	456	aCTGACCCAGCAGGGCTGAGCAGTCCCCATCTGCCAGGCACATCCTct/act																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207451	29207510	+	inframe_deletion	In_Frame_Del	DEL	GGCGCGCGGGCTGCGCTCGTCGTAGACGATGACCGCCGAGTAGAGGCCGGAGCGCAAGCG	GGCGCGCGGGCTGCGCTCGTCGTAGACGATGACCGCCGAGTAGAGGCCGGAGCGCAAGCG	-			P-0041658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	47	652	0	ENST00000240100.2:c.286_345del	p.Arg96_Ala115del	p.R96_A115del	ENST00000240100	NM_001394.6	96	CGCTTGCGCTCCGGCCTCTACTCGGCGGTCATCGTCTACGACGAGCGCAGCCCGCGCGCC/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	115	474	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0041664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	311	467	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578378	7578395	+	inframe_deletion	In_Frame_Del	DEL	ATCTGAGCAGCGCTCATG	ATCTGAGCAGCGCTCATG	-			P-0041664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	154	731	0	ENST00000269305.4:c.535_552del	p.His179_Asp184del	p.H179_D184del	ENST00000269305	NM_001126112.2	179	CATGAGCGCTGCTCAGAT/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	263	772	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0040523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	9	721	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	29432664	29432664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	8	720	1	ENST00000389048.3:c.3824G>A	p.Arg1275Gln	p.R1275Q	ENST00000389048	NM_004304.4	1275	cGa/cAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42791757	42791757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	8	847	2	ENST00000575354.2:c.643C>T	p.Arg215Trp	p.R215W	ENST00000575354	NM_015125.3	215	Cgg/Tgg																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22221726	22221726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	11	78	0	ENST00000215832.6:c.5C>T	p.Ala2Val	p.A2V	ENST00000215832	NM_002745.4	2	gCg/gTg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336099	73336099	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	15	329	0	ENST00000377767.4:c.2304del	p.Ser769LeufsTer36	p.S769Lfs*36	ENST00000377767	NM_014953.3	768	gcG/gc																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158429	26158429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	70	900	1	ENST00000289316.2:c.32C>T	p.Pro11Leu	p.P11L	ENST00000289316	NM_138720.2	11	cCa/cTa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289314	33289314	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	51	581	2	ENST00000374542.5:c.238G>C	p.Asp80His	p.D80H	ENST00000374542	NM_001141970.1	80	Gac/Cac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273111	55273111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	39	824	0	ENST00000275493.2:c.3434C>T	p.Thr1145Ile	p.T1145I	ENST00000275493	NM_005228.3	1145	aCc/aTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399471	139399471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	61	983	0	ENST00000277541.6:c.4672G>A	p.Gly1558Arg	p.G1558R	ENST00000277541	NM_017617.3	1558	Ggg/Agg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	36	446	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577497	7577497	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0041530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	97	743	0	ENST00000269305.4:c.782+2T>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101900207	101900207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	24	411	0	ENST00000374994.4:c.641G>A	p.Gly214Asp	p.G214D	ENST00000374994	NM_004612.2	214	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	23	450	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0041537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	26	572	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	197	409	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	358	1029	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400777	72400777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	75	268	0	ENST00000357731.5:c.394C>A	p.His132Asn	p.H132N	ENST00000357731	NM_173808.2	132	Cat/Aat																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910346	29910346	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	149	836	0	ENST00000376809.5:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000376809	NM_002116.7	6	Ccc/cc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468453	89468453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	71	355	0	ENST00000336596.2:c.1987C>A	p.Gln663Lys	p.Q663K	ENST00000336596	NM_005233.5	663	Cag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376322	118376322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	183	551	0	ENST00000534358.1:c.9715C>G	p.Pro3239Ala	p.P3239A	ENST00000534358	NM_005933.3	3239	Ccc/Gcc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549328	21549328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	136	845	2	ENST00000382592.4:c.2948G>A	p.Arg983Gln	p.R983Q	ENST00000382592	NM_014572.2	983	cGg/cAg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374908	45374908	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	215	523	0	ENST00000262160.6:c.935G>T	p.Cys312Phe	p.C312F	ENST00000262160	NM_005901.5	312	tGc/tTc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26029193	26029193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	40	358	0	ENST00000435504.4:c.157C>T	p.Leu53Phe	p.L53F	ENST00000435504		53	Ctt/Ttt																																																																														
BARD1	580	MSKCC	GRCh37	2	215645839	215645839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	106	595	0	ENST00000260947.4:c.759G>T	p.Gln253His	p.Q253H	ENST00000260947	NM_000465.2	253	caG/caT																																																																														
ATR	545	MSKCC	GRCh37	3	142211993	142211993	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	41	375	0	ENST00000350721.4:c.6059C>G	p.Ala2020Gly	p.A2020G	ENST00000350721	NM_001184.3	2020	gCa/gGa																																																																														
PARK2	5071	MSKCC	GRCh37	6	161969991	161969991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	239	768	0	ENST00000366898.1:c.978G>T	p.Gln326His	p.Q326H	ENST00000366898	NM_004562.2	326	caG/caT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	22	253	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0041324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	56	488	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023007	27023008	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			P-0041324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	19	4	0	ENST00000324856.7:c.126_128dup	p.Ala45dup	p.A45dup	ENST00000324856	NM_006015.4	45	gag/gaGGCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0041482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	203	621	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627582	14627582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	98	473	0	ENST00000254322.2:c.488C>T	p.Pro163Leu	p.P163L	ENST00000254322	NM_006145.1	163	cCa/cTa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286959	33286959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	81	502	0	ENST00000374542.5:c.1978G>A	p.Gly660Arg	p.G660R	ENST00000374542	NM_001141970.1	660	Ggg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	361	590	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108141870	108141870	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	191	336	0	ENST00000278616.4:c.2918T>A	p.Leu973Gln	p.L973Q	ENST00000278616	NM_000051.3	973	cTa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108142082	108142082	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	231	427	0	ENST00000278616.4:c.3026A>C	p.Glu1009Ala	p.E1009A	ENST00000278616	NM_000051.3	1009	gAg/gCg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620601	52620602	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0041592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	272	409	0	ENST00000394830.3:c.3151_3152del	p.Trp1051AspfsTer30	p.W1051Dfs*30	ENST00000394830	NM_018313.4	1051	TGg/g																																																																														
AKT3	10000	MSKCC	GRCh37	1	243828126	243828126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	372	390	0	ENST00000263826.5:c.232C>A	p.Gln78Lys	p.Q78K	ENST00000263826	NM_005465.4	78	Cag/Aag																																																																														
TET1	80312	MSKCC	GRCh37	10	70405356	70405356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	312	530	0	ENST00000373644.4:c.2870C>A	p.Pro957Gln	p.P957Q	ENST00000373644	NM_030625.2	957	cCa/cAa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222369	39222369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	377	634	0	ENST00000402219.2:c.3241A>G	p.Asn1081Asp	p.N1081D	ENST00000402219	NM_005633.3	1081	Aat/Gat																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27840051	27840051	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	230	373	0	ENST00000328488.2:c.43A>G	p.Lys15Glu	p.K15E	ENST00000328488	NM_003533.2	15	Aaa/Gaa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675400	30675400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	96	545	0	ENST00000376406.3:c.2956T>C	p.Ser986Pro	p.S986P	ENST00000376406	NM_014641.2	986	Tct/Cct																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441988	52441999	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGTGAAGT	CCTTGGTGAAGT	-			P-0041613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	99	436	0	ENST00000460680.1:c.350_361del	p.Asp117_Lys120del	p.D117_K120del	ENST00000460680	NM_004656.3	117	gACTTCACCAAGGgt/ggt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557601	21557602	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGT			P-0041613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	120	644	0	ENST00000382592.4:c.2240_2243dup	p.Pro749HisfsTer18	p.P749Hfs*18	ENST00000382592	NM_014572.2	748	atc/atACATc																																																																														
B2M	567	MSKCC	GRCh37	15	45007693	45007693	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	53	347	0	ENST00000558401.1:c.140del	p.Val47GlyfsTer14	p.V47Gfs*14	ENST00000558401	NM_004048.2	47	gTg/gg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441980	52441980	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	96	414	0	ENST00000460680.1:c.369C>G	p.Ser123Arg	p.S123R	ENST00000460680	NM_004656.3	123	agC/agG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	18	313	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720868	89720871	+	frameshift_variant	Frame_Shift_Del	DEL	ATTT	ATTT	-			P-0041628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	23	390	0	ENST00000371953.3:c.1019_1022del	p.Asn340IlefsTer3	p.N340Ifs*3	ENST00000371953	NM_000314.4	340	aATTTt/at																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061115	38061133	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGCCGCCCTTGGCGCC	CAGGGCCGCCCTTGGCGCC	-			P-0041628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	18	246	0	ENST00000250448.2:c.856_874del	p.Gly286ArgfsTer29	p.G286Rfs*29	ENST00000250448	NM_004496.3	286	GGCGCCAAGGGCGGCCCTGag/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	388	353	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	119	613	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574253	95574253	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149242330		P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	103	267	0	ENST00000343455.3:c.2614G>A	p.Ala872Thr	p.A872T	ENST00000343455	NM_177438.2	872	Gct/Act																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43772110	43772110	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	153	728	1	ENST00000382044.4:c.605C>A	p.Ser202Ter	p.S202*	ENST00000382044	NM_001141980.1	202	tCa/tAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272394	11272394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	105	417	0	ENST00000361445.4:c.3536C>T	p.Ser1179Leu	p.S1179L	ENST00000361445	NM_004958.3	1179	tCa/tTa																																																																														
PGR	5241	MSKCC	GRCh37	11	100909943	100909943	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	267	377	0	ENST00000325455.5:c.2706T>A	p.Ser902Arg	p.S902R	ENST00000325455	NM_001202474.3	902	agT/agA																																																																														
KDM5A	5927	MSKCC	GRCh37	12	459939	459939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	133	463	1	ENST00000399788.2:c.1156C>T	p.Pro386Ser	p.P386S	ENST00000399788	NM_001042603.1	386	Ccc/Tcc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50492543	50492543	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	290	642	0	ENST00000394963.4:c.1439A>C	p.Glu480Ala	p.E480A	ENST00000394963	NM_003076.4	480	gAg/gCg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41239805	41239805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	315	636	1	ENST00000379561.5:c.545C>T	p.Thr182Met	p.T182M	ENST00000379561	NM_002015.3	182	aCg/aTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046517	30046517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	135	562	1	ENST00000331968.5:c.2666C>A	p.Ala889Asp	p.A889D	ENST00000331968	NM_002742.2	889	gCt/gAt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066958	30066958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	99	380	0	ENST00000331968.5:c.2173C>A	p.Leu725Ile	p.L725I	ENST00000331968	NM_002742.2	725	Ctt/Att																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675127	40675127	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	178	787	0	ENST00000249776.8:c.91T>A	p.Tyr31Asn	p.Y31N	ENST00000249776	NM_033286.3	31	Tac/Aac																																																																														
MGA	23269	MSKCC	GRCh37	15	42041429	42041429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	149	529	0	ENST00000219905.7:c.5624C>T	p.Ser1875Leu	p.S1875L	ENST00000219905	NM_001164273.1	1875	tCa/tTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779676	3779676	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	286	642	0	ENST00000262367.5:c.5372del	p.Ser1791CysfsTer8	p.S1791Cfs*8	ENST00000262367	NM_004380.2	1791	tCg/tg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992511	72992511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	516	779	0	ENST00000268489.5:c.1534G>T	p.Gly512Trp	p.G512W	ENST00000268489	NM_006885.3	512	Ggg/Tgg																																																																														
STK11	6794	MSKCC	GRCh37	19	1206987	1206987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	351	687	0	ENST00000326873.7:c.75C>A	p.Phe25Leu	p.F25L	ENST00000326873	NM_000455.4	25	ttC/ttA																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303041	15303041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	385	820	2	ENST00000263388.2:c.409G>T	p.Gly137Trp	p.G137W	ENST00000263388	NM_000435.2	137	Ggg/Tgg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462300	89462300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	86	366	0	ENST00000336596.2:c.1772C>T	p.Pro591Leu	p.P591L	ENST00000336596	NM_005233.5	591	cCa/cTa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106512982	106512982	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	127	187	1	ENST00000359195.3:c.1996G>C	p.Ala666Pro	p.A666P	ENST00000359195	NM_002649.2	666	Gct/Cct																																																																														
MET	4233	MSKCC	GRCh37	7	116380987	116380987	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	156	514	0	ENST00000397752.3:c.1609C>T	p.Gln537Ter	p.Q537*	ENST00000397752	NM_000245.2	537	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151835970	151835970	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	179	406	0	ENST00000262189.6:c.14554del	p.Ala4852HisfsTer9	p.A4852Hfs*9	ENST00000262189	NM_170606.2	4852	Gca/ca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211538	98211538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	271	552	0	ENST00000331920.6:c.3617G>T	p.Arg1206Leu	p.R1206L	ENST00000331920	NM_000264.3	1206	cGc/cTc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793310	139793310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	161	713	0	ENST00000247668.2:c.118G>T	p.Val40Phe	p.V40F	ENST00000247668	NM_021138.3	40	Gtc/Ttc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42840342	42840342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	70	432	0	ENST00000398585.3:c.1406G>A	p.Gly469Glu	p.G469E	ENST00000398585	NM_001135099.1	469	gGg/gAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510698	120510704	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACCCATG	ACCCATG	-			P-0041631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	162	452	0	ENST00000256646.2:c.1260_1264+2del		p.X420_splice	ENST00000256646	NM_024408.3	420																																																																															
RET	5979	MSKCC	GRCh37	10	43623562	43623562	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0041631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	90	302	2	ENST00000355710.3:c.3190A>G	p.Met1064Val	p.M1064V	ENST00000355710	NM_020975.4	1064	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577069	7577069	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	247	764	0	ENST00000269305.4:c.869del	p.Arg290ProfsTer55	p.R290Pfs*55	ENST00000269305	NM_001126112.2	290	cGc/cc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	96	575	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650332	48650332	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200599207		P-0041429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	129	468	0	ENST00000376670.3:c.302C>T	p.Thr101Met	p.T101M	ENST00000376670	NM_002049.3	101	aCg/aTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47147513	47147513	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	128	468	0	ENST00000409792.3:c.4813T>A	p.Tyr1605Asn	p.Y1605N	ENST00000409792	NM_014159.6	1605	Tat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447845	49447846	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0041429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	103	872	0	ENST00000301067.7:c.588dup	p.Cys197LeufsTer23	p.C197Lfs*23	ENST00000301067	NM_003482.3	196	-/C																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198262739	198262739	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	111	458	0	ENST00000335508.6:c.3236A>G	p.Asn1079Ser	p.N1079S	ENST00000335508	NM_012433.2	1079	aAc/aGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256205	16256205	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	164	539	1	ENST00000375759.3:c.3475delA	p.Ile1159LeufsTer28	p.I1159Lfs*28	ENST00000375759	NM_015001.2	1157	gAa/ga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	179	530	7	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599302	28599302	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	311	729	2	ENST00000253063.3:c.748G>A	p.Gly250Arg	p.G250R	ENST00000253063	NM_031459.4	250	Ggg/Agg																																																																														
STK40	83931	MSKCC	GRCh37	1	36824368	36824368	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	196	573	0	ENST00000373129.3:c.168A>C	p.Lys56Asn	p.K56N	ENST00000373129	NM_032017.1	56	aaA/aaC																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843599	156843599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	298	815	0	ENST00000524377.1:c.1025G>A	p.Arg342Gln	p.R342Q	ENST00000524377	NM_002529.3	342	cGg/cAg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	155	266	1	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692826	89692826	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	63	161	0	ENST00000371953.3:c.313del	p.Cys105ValfsTer8	p.C105Vfs*8	ENST00000371953	NM_000314.4	104	Ttt/tt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	60	579	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946901	71946901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	242	802	0	ENST00000298229.2:c.2750G>A	p.Arg917His	p.R917H	ENST00000298229	NM_001567.3	917	cGc/cAc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94924639	94924639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	96	648	0	ENST00000536441.1:c.271C>T	p.Arg91Trp	p.R91W	ENST00000536441	NM_144665.3	91	Cgg/Tgg																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125499317	125499317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	75	326	0	ENST00000428830.2:c.386G>T	p.Arg129Met	p.R129M	ENST00000428830	NM_001114121.2	129	aGg/aTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	136	417	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	111	504	7	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425184	49425184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	377	859	0	ENST00000301067.7:c.13304C>T	p.Ala4435Val	p.A4435V	ENST00000301067	NM_003482.3	4435	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432396	49432396	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	341	828	0	ENST00000301067.7:c.8743C>T	p.Arg2915Ter	p.R2915*	ENST00000301067	NM_003482.3	2915	Cga/Tga																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856521	111856521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	154	348	0	ENST00000341259.2:c.572C>T	p.Pro191Leu	p.P191L	ENST00000341259	NM_005475.2	191	cCg/cTg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120794796	120794797	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	312	875	0	ENST00000257552.2:c.560dup	p.Glu188GlyfsTer191	p.E188Gfs*191	ENST00000257552	NM_002442.3	187	aag/aaAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	240	692	1	ENST00000320574.5:c.6088delG	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28674632	28674632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	44	36	0	ENST00000241453.7:c.16C>T	p.Arg6Cys	p.R6C	ENST00000241453	NM_004119.2	6	Cgc/Tgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	121	348	1	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061649	38061649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	129	339	0	ENST00000250448.2:c.340G>A	p.Gly114Ser	p.G114S	ENST00000250448	NM_004496.3	114	Ggc/Agc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95563031	95563031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	101	259	0	ENST00000343455.3:c.4226C>T	p.Ala1409Val	p.A1409V	ENST00000343455	NM_177438.2	1409	gCg/gTg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38631981	38631981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	108	515	2	ENST00000299084.4:c.471delT	p.Gln158SerfsTer16	p.Q158Sfs*16	ENST00000299084	NM_152594.2	156	cTt/ct																																																																														
MGA	23269	MSKCC	GRCh37	15	42028622	42028622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	189	570	0	ENST00000219905.7:c.4160A>G	p.Asn1387Ser	p.N1387S	ENST00000219905	NM_001164273.1	1387	aAc/aGc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423598	88423598	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	169	574	0	ENST00000360948.2:c.2237A>C	p.Lys746Thr	p.K746T	ENST00000360948	NM_001012338.2	746	aAg/aCg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56867253	56867253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	198	381	0	ENST00000308159.5:c.1472A>G	p.His491Arg	p.H491R	ENST00000308159	NM_014669.4	491	cAt/cGt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655343	67655343	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	92	333	0	ENST00000264010.4:c.1208-2A>G		p.X403_splice	ENST00000264010	NM_006565.3	403																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828251	72828251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	177	611	0	ENST00000268489.5:c.8330G>A	p.Ser2777Asn	p.S2777N	ENST00000268489	NM_006885.3	2777	aGt/aAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993013	72993014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	240	847	0	ENST00000268489.5:c.1031dup	p.Asn344LysfsTer13	p.N344Kfs*13	ENST00000268489	NM_006885.3	344	aac/aaAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81957132	81957132	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	166	479	1	ENST00000359376.3:c.2350C>T	p.Arg784Ter	p.R784*	ENST00000359376	NM_002661.3	784	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	85	290	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119703	17119703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	80	468	0	ENST00000285071.4:c.1291C>T	p.Leu431Phe	p.L431F	ENST00000285071	NM_144997.5	431	Ctc/Ttc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883774	37883774	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	285	809	1	ENST00000269571.5:c.3391delC	p.Leu1131Ter	p.L1131*	ENST00000269571		1129	gCc/gc																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804246	46804246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	260	727	1	ENST00000290295.7:c.761G>A	p.Ser254Asn	p.S254N	ENST00000290295	NM_006361.5	254	aGc/aAc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740450	58740450	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	156	570	0	ENST00000305921.3:c.1357del	p.Ser453GlnfsTer4	p.S453Qfs*4	ENST00000305921	NM_003620.3	452	gTt/gt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573505	48573506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	50	270	0	ENST00000342988.3:c.94_95delAG	p.Ser32Ter	p.S32*	ENST00000342988	NM_005359.5	30	gGA/g																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	47	258	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231539	5231539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	121	618	1	ENST00000357368.4:c.1937C>T	p.Thr646Met	p.T646M	ENST00000357368	NM_002850.3	646	aCg/aTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10260127	10260127	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	129	617	0	ENST00000340748.4:c.2538+2T>C		p.X846_splice	ENST00000340748		846																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303246	15303246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	142	881	0	ENST00000263388.2:c.282G>T	p.Gln94His	p.Q94H	ENST00000263388	NM_000435.2	94	caG/caT																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943456	17943456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	138	764	0	ENST00000458235.1:c.2552T>C	p.Leu851Pro	p.L851P	ENST00000458235	NM_000215.3	851	cTg/cCg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950470	17950470	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	135	685	0	ENST00000458235.1:c.1257C>A	p.Asn419Lys	p.N419K	ENST00000458235	NM_000215.3	419	aaC/aaA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213376	36213376	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	296	885	1	ENST00000222270.7:c.2571+2T>C		p.X857_splice	ENST00000222270	NM_014727.1	857																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36229237	36229237	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	66	689	0	ENST00000222270.7:c.7927A>G	p.Met2643Val	p.M2643V	ENST00000222270	NM_014727.1	2643	Atg/Gtg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753887	42753887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	542	797	2	ENST00000222329.4:c.377del	p.Gly126ValfsTer145	p.G126Vfs*145	ENST00000222329	NM_006494.2	126	gGt/gt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50916773	50916773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	351	625	2	ENST00000440232.2:c.2245G>A	p.Ala749Thr	p.A749T	ENST00000440232	NM_002691.3	749	Gcc/Acc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661129	227661129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	65	774	1	ENST00000305123.5:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000305123	NM_005544.2	776	Cgc/Tgc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	241	751	2	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827961	40827961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	210	506	0	ENST00000373198.4:c.2467G>A	p.Ala823Thr	p.A823T	ENST00000373198	NM_133170.3	823	Gcc/Acc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845396	42845396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	237	670	0	ENST00000398585.3:c.866G>A	p.Arg289His	p.R289H	ENST00000398585	NM_001135099.1	289	cGc/cAc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24167562	24167562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	220	608	0	ENST00000263121.7:c.946C>T	p.Arg316Trp	p.R316W	ENST00000263121	NM_003073.3	316	Cgg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41574736	41574737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	296	858	0	ENST00000263253.7:c.7025dup	p.Gln2343ThrfsTer36	p.Q2343Tfs*36	ENST00000263253	NM_001429.3	2341	tcc/tCcc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090057	37090057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	61	559	0	ENST00000231790.2:c.1946C>A	p.Pro649His	p.P649H	ENST00000231790	NM_000249.3	649	cCt/cAt																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99823088	99823088	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	96	390	0	ENST00000280892.6:c.124del	p.Thr42ArgfsTer41	p.T42Rfs*41	ENST00000280892	NM_001130678.1	42	Acg/cg																																																																														
TET2	54790	MSKCC	GRCh37	4	106197300	106197300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	57	333	0	ENST00000380013.4:c.5633G>A	p.Arg1878His	p.R1878H	ENST00000380013	NM_001127208.2	1878	cGt/cAt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38963111	38963111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	47	235	0	ENST00000357387.3:c.1433G>A	p.Arg478His	p.R478H	ENST00000357387	NM_152756.3	478	cGc/cAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	301	519	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	65	341	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	73	209	1	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288620	33288620	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	90	392	0	ENST00000374542.5:c.932T>G	p.Leu311Arg	p.L311R	ENST00000374542	NM_001141970.1	311	cTc/cGc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152420001	152420001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	185	534	3	ENST00000206249.3:c.1688C>T	p.Thr563Met	p.T563M	ENST00000206249	NM_000125.3	563	aCg/aTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099427	157099432	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1234257273		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	57	313	0	ENST00000346085.5:c.381_386del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	122	CAGCAG/-																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521969	157521969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	54	549	0	ENST00000346085.5:c.4241C>T	p.Pro1414Leu	p.P1414L	ENST00000346085	NM_020732.3	1414	cCg/cTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266558	55266558	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	149	420	0	ENST00000275493.2:c.2848+2T>C		p.X950_splice	ENST00000275493	NM_005228.3	950																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508257	106508257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	99	337	1	ENST00000359195.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000359195	NM_002649.2	84	gCg/gTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545783	106545783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	202	474	0	ENST00000359195.3:c.3260T>C	p.Phe1087Ser	p.F1087S	ENST00000359195	NM_002649.2	1087	tTt/tCt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	129	351	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	108	315	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249593	110249593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	366	908	1	ENST00000374672.4:c.1082C>T	p.Pro361Leu	p.P361L	ENST00000374672	NM_004235.4	361	cCg/cTg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128419934	128419934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	37	471	1	ENST00000265960.3:c.494G>A	p.Gly165Asp	p.G165D	ENST00000265960	NM_001006617.1	165	gGc/gAc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128420046	128420047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	124	596	0	ENST00000265960.3:c.381dup	p.Ser128IlefsTer28	p.S128Ifs*28	ENST00000265960	NM_001006617.1	127	-/A																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413899	139413899	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	361	598	0	ENST00000277541.6:c.861G>A	p.Trp287Ter	p.W287*	ENST00000277541	NM_017617.3	287	tgG/tgA																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20153856	20153857	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0041436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	87	366	0	ENST00000379607.5:c.203dup	p.Val69GlyfsTer19	p.V69Gfs*19	ENST00000379607	NM_001412.3	68	aag/aaAg																																																																														
EP300	2033	MSKCC	GRCh37	22	41566524	41566525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	47	458	1	ENST00000263253.7:c.4408dup	p.Met1470AsnfsTer3	p.M1470Nfs*3	ENST00000263253	NM_001429.3	1467	-/A																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526211	31526211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	190	1059	0	ENST00000344624.3:c.829C>T	p.Arg277Cys	p.R277C	ENST00000344624		277	Cgc/Tgc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165321	47165321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	38	321	0	ENST00000409792.3:c.805C>T	p.Gln269Ter	p.Q269*	ENST00000409792	NM_014159.6	269	Caa/Taa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20152079	20152079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	12	203	0	ENST00000379607.5:c.251A>G	p.Tyr84Cys	p.Y84C	ENST00000379607	NM_001412.3	84	tAc/tGc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307484	118307484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	48	642	0	ENST00000534358.1:c.257C>G	p.Ser86Trp	p.S86W	ENST00000534358	NM_005933.3	86	tCg/tGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0041460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	227	449	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221830	55221830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150549265		P-0041460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	191	960	0	ENST00000275493.2:c.874G>A	p.Val292Met	p.V292M	ENST00000275493	NM_005228.3	292	Gtg/Atg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78426105	78426105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	117	601	0	ENST00000370768.2:c.1420C>G	p.Pro474Ala	p.P474A	ENST00000370768	NM_003902.3	474	Cct/Gct																																																																														
CDH1	999	MSKCC	GRCh37	16	68847221	68847221	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	143	609	0	ENST00000261769.5:c.1145del	p.Gly382ValfsTer11	p.G382Vfs*11	ENST00000261769	NM_004360.3	381	aaG/aa																																																																														
CDH1	999	MSKCC	GRCh37	16	68842594	68842595	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0041460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	162	567	0	ENST00000261769.5:c.532-1_532del		p.X178_splice	ENST00000261769	NM_004360.3	178																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	727	550	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	48954300	48954300	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0041468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	198	243	0	ENST00000267163.4:c.1422-1G>A		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	465	603	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
RAD52	5893	MSKCC	GRCh37	12	1023107	1023107	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	472	581	0	ENST00000358495.3:c.1148C>G	p.Ser383Cys	p.S383C	ENST00000358495	NM_134424.2	383	tCt/tGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436175	56436175	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	374	584	0	ENST00000407977.2:c.962del	p.Ser321TyrfsTer98	p.S321Yfs*98	ENST00000407977		321	tCa/ta																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72897455	72897455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	311	485	0	ENST00000325599.8:c.37G>T	p.Asp13Tyr	p.D13Y	ENST00000325599	NM_018130.2	13	Gac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	45	432	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	203	777	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872380	45872380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	49	745	0	ENST00000391945.4:c.131C>T	p.Ser44Leu	p.S44L	ENST00000391945	NM_000400.3	44	tCa/tTa																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774148	56774148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	155	523	1	ENST00000337432.4:c.499G>A	p.Asp167Asn	p.D167N	ENST00000337432	NM_058216.2	167	Gat/Aat																																																																														
CCND3	896	MSKCC	GRCh37	6	41908238	41908238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	216	815	0	ENST00000372991.4:c.284G>A	p.Arg95Gln	p.R95Q	ENST00000372991	NM_001760.3	95	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29676254	29676254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	97	302	0	ENST00000358273.4:c.7306G>A	p.Val2436Met	p.V2436M	ENST00000358273	NM_001042492.2	2436	Gtg/Atg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075565	8075565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	104	396	0	ENST00000377482.5:c.115G>C	p.Glu39Gln	p.E39Q	ENST00000377482	NM_018948.3	39	Gag/Cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107144	27107169	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTGTACGAATCACGGCTGTTGGAC	CTCTGTACGAATCACGGCTGTTGGAC	-			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	58	549	0	ENST00000324856.7:c.6755_6780del	p.Thr2252AsnfsTer17	p.T2252Nfs*17	ENST00000324856	NM_006015.4	2252	aCTCTGTACGAATCACGGCTGTTGGAC/a																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850754	63850754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	57	448	0	ENST00000279873.7:c.1532G>C	p.Arg511Thr	p.R511T	ENST00000279873	NM_032199.2	511	aGa/aCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445199	49445199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	257	785	1	ENST00000301067.7:c.2267C>T	p.Pro756Leu	p.P756L	ENST00000301067	NM_003482.3	756	cCt/cTt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865735	57865735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	119	719	0	ENST00000228682.2:c.3212C>T	p.Ser1071Phe	p.S1071F	ENST00000228682	NM_005269.2	1071	tCt/tTt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590941	95590941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	38	273	0	ENST00000343455.3:c.968G>C	p.Gly323Ala	p.G323A	ENST00000343455	NM_177438.2	323	gGa/gCa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483875	88483875	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs140982180		P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	135	659	0	ENST00000360948.2:c.1695C>A	p.Asp565Glu	p.D565E	ENST00000360948	NM_001012338.2	565	gaC/gaA																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640404	3640404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	68	937	1	ENST00000294008.3:c.3235C>T	p.Pro1079Ser	p.P1079S	ENST00000294008	NM_032444.2	1079	Cca/Tca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004622	16004622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	131	508	0	ENST00000268712.3:c.2632G>A	p.Asp878Asn	p.D878N	ENST00000268712	NM_006311.3	878	Gat/Aat																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59878621	59878621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	64	304	0	ENST00000259008.2:c.1133G>A	p.Arg378Lys	p.R378K	ENST00000259008	NM_032043.2	378	aGg/aAg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46603762	46603762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	193	689	0	ENST00000263734.3:c.1119C>G	p.Ile373Met	p.I373M	ENST00000263734	NM_001430.4	373	atC/atG																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561342	9561342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	58	462	0	ENST00000353224.5:c.440G>A	p.Arg147Lys	p.R147K	ENST00000353224	NM_177990.2	147	aGg/aAg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46252810	46252810	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	41	224	0	ENST00000371998.3:c.239G>C	p.Arg80Pro	p.R80P	ENST00000371998		80	cGt/cCt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252978	36252983	+	inframe_deletion	In_Frame_Del	DEL	AGTGCC	AGTGCC	-			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	101	357	0	ENST00000300305.3:c.379_384del	p.Gly127_Thr128del	p.G127_T128del	ENST00000300305		127	GGCACT/-																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803126	1803126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	89	840	0	ENST00000260795.2:c.478G>A	p.Asp160Asn	p.D160N	ENST00000260795		160	Gac/Aac																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177816	56177816	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	64	346	0	ENST00000399503.3:c.2789G>C	p.Arg930Thr	p.R930T	ENST00000399503	NM_005921.1	930	aGa/aCa																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197319	26197319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	71	541	0	ENST00000356476.2:c.160C>T	p.Arg54Cys	p.R54C	ENST00000356476		54	Cgc/Tgc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33290667	33290667	+	5_prime_UTR_variant	5'UTR	SNP	C	C	T			P-0041578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	85	649	0	ENST00000374542.5:c.-81G>A		p.*27*	ENST00000374542	NM_001141970.1																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	176	401	1				ENST00000310581	NM_198253.2																																																																																
FUBP1	8880	MSKCC	GRCh37	1	78433847	78433848	+	splice_donor_variant	Splice_Site	DEL	AC	AC	-			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	99	306	0	ENST00000370768.2:c.250+1_250+2del		p.X84_splice	ENST00000370768	NM_003902.3	84																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3618	209	734	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
MAX	4149	MSKCC	GRCh37	14	65544703	65544703	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	78	742	0	ENST00000358664.4:c.223C>T	p.Arg75Ter	p.R75*	ENST00000358664	NM_002382.4	75	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044453	47044453	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	216	381	0	ENST00000329236.7:c.1717-1G>C		p.X573_splice	ENST00000329236	NM_001204466.1	573																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212530147	212530147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	34	343	0	ENST00000342788.4:c.1772A>G	p.Glu591Gly	p.E591G	ENST00000342788	NM_005235.2	591	gAa/gGa																																																																														
ATM	472	MSKCC	GRCh37	11	108196857	108196857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	201	360	0	ENST00000278616.4:c.6880G>A	p.Glu2294Lys	p.E2294K	ENST00000278616	NM_000051.3	2294	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376338	118376338	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	339	615	0	ENST00000534358.1:c.9731C>G	p.Ser3244Ter	p.S3244*	ENST00000534358	NM_005933.3	3244	tCa/tGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295176	1295176	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	142	308	0				ENST00000310581	NM_198253.2																																																																																
IKBKE	9641	MSKCC	GRCh37	1	206647692	206647692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	56	508	0	ENST00000367120.3:c.106G>A	p.Ala36Thr	p.A36T	ENST00000367120	NM_014002.3	36	Gct/Act																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63819044	63819044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	46	210	0	ENST00000279873.7:c.1091G>A	p.Gly364Glu	p.G364E	ENST00000279873	NM_032199.2	364	gGa/gAa																																																																														
ATM	472	MSKCC	GRCh37	11	108175516	108175516	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	31	389	0	ENST00000278616.4:c.5611A>T	p.Thr1871Ser	p.T1871S	ENST00000278616	NM_000051.3	1871	Acc/Tcc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376161	118376161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	292	594	0	ENST00000534358.1:c.9554C>T	p.Ser3185Leu	p.S3185L	ENST00000534358	NM_005933.3	3185	tCa/tTa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23649225	23649225	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	118	391	1	ENST00000261584.4:c.157G>T	p.Glu53Ter	p.E53*	ENST00000261584	NM_024675.3	53	Gaa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15942932	15942932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	81	497	0	ENST00000268712.3:c.6770C>T	p.Pro2257Leu	p.P2257L	ENST00000268712	NM_006311.3	2257	cCt/cTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879650	37879650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	3400	839	0	ENST00000269571.5:c.2025C>G	p.Ile675Met	p.I675M	ENST00000269571		675	atC/atG																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14628978	14628978	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	137	613	0	ENST00000254322.2:c.184G>C	p.Glu62Gln	p.E62Q	ENST00000254322	NM_006145.1	62	Gag/Cag																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84403385	84403385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	105	391	0	ENST00000321945.7:c.100C>G	p.Leu34Val	p.L34V	ENST00000321945	NM_139076.2	34	Ctt/Gtt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295217	1295217	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	175	388	0				ENST00000310581	NM_198253.2																																																																																
HGF	3082	MSKCC	GRCh37	7	81334845	81334845	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	53	416	0	ENST00000222390.5:c.1871A>C	p.Asn624Thr	p.N624T	ENST00000222390	NM_000601.4	624	aAc/aCc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139411752	139411752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	265	942	0	ENST00000277541.6:c.1527C>G	p.Ile509Met	p.I509M	ENST00000277541	NM_017617.3	509	atC/atG																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044544	47044544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	274	461	0	ENST00000329236.7:c.1807G>A	p.Asp603Asn	p.D603N	ENST00000329236	NM_001204466.1	603	Gat/Aat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044840	47044840	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0041579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	334	457	0	ENST00000329236.7:c.1933-1G>A		p.X645_splice	ENST00000329236	NM_001204466.1	645																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0041580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	206	291	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CD274	29126	MSKCC	GRCh37	9	5462858	5462858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	46	62	0	ENST00000381577.3:c.419G>C	p.Arg140Thr	p.R140T	ENST00000381577	NM_014143.3	140	aGa/aCa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62316900	62316900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	157	207	1	ENST00000508582.2:c.1288G>A	p.Glu430Lys	p.E430K	ENST00000508582		430	Gag/Aag																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46267858	46267858	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	110	184	2	ENST00000371998.3:c.2619C>G	p.Ile873Met	p.I873M	ENST00000371998		873	atC/atG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023414	27023414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	144	184	0	ENST00000324856.7:c.520G>T	p.Gly174Cys	p.G174C	ENST00000324856	NM_006015.4	174	Ggc/Tgc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243801045	243801045	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0041580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	34	113	0	ENST00000263826.5:c.430-1G>C		p.X144_splice	ENST00000263826	NM_005465.4	144																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71945424	71945424	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	146	248	3	ENST00000298229.2:c.2312C>G	p.Ser771Cys	p.S771C	ENST00000298229	NM_001567.3	771	tCt/tGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427852	49427852	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0041580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	89	208	0	ENST00000301067.7:c.10738C>T	p.Gln3580Ter	p.Q3580*	ENST00000301067	NM_003482.3	3580	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	48955517	48955517	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	58	114	0	ENST00000267163.4:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000267163	NM_000321.2	545	Gaa/Caa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347099	347099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	166	256	0	ENST00000262320.3:c.1912G>C	p.Glu638Gln	p.E638Q	ENST00000262320	NM_003502.3	638	Gag/Cag																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110251	3110251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	235	237	0	ENST00000078429.4:c.241C>T	p.Gln81Ter	p.Q81*	ENST00000078429	NM_002067.2	81	Cag/Tag																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200062	128200062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	159	307	0	ENST00000341105.2:c.1243G>C	p.Glu415Gln	p.E415Q	ENST00000341105	NM_032638.4	415	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	154	551	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47155365	47155365	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0027813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	73	357	0	ENST00000409792.3:c.4715+1G>T		p.X1572_splice	ENST00000409792	NM_014159.6	1572																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27089776	27089777	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0027813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	72	455	1	ENST00000324856.7:c.2732_2732+1delinsTT		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																															
TBX3	6926	MSKCC	GRCh37	12	115109730	115109731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			610	125	687	0	ENST00000257566.3:c.2147dup	p.Ala717GlyfsTer13	p.A717Gfs*13	ENST00000257566	NM_016569.3	716	gcg/gcCg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28609769	28609769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	103	572	0	ENST00000241453.7:c.1460C>A	p.Ala487Asp	p.A487D	ENST00000241453	NM_004119.2	487	gCt/gAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032207	10032207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			704	67	630	2	ENST00000330684.3:c.616C>A	p.Leu206Met	p.L206M	ENST00000330684	NM_001134407.1	206	Ctg/Atg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129968	55129968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	113	515	0	ENST00000257290.5:c.502G>T	p.Val168Leu	p.V168L	ENST00000257290	NM_006206.4	168	Gta/Tta																																																																														
STK19	8859	MSKCC	GRCh37	6	31939814	31939814	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	60	677	0	ENST00000375331.2:c.41A>G	p.Gln14Arg	p.Q14R	ENST00000375331	NM_004197.1	14	cAg/cGg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714627	52714627	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	58	605	0	ENST00000322088.6:c.385G>C	p.Val129Leu	p.V129L	ENST00000322088	NM_014225.5	129	Gtg/Ctg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028382-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			603	76	417	0	ENST00000269305.4:c.584del	p.Ile195ThrfsTer52	p.I195Tfs*52	ENST00000269305	NM_001126112.2	195	aTc/ac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251913	153251913	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028382-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			435	66	311	0	ENST00000281708.4:c.1093T>C	p.Trp365Arg	p.W365R	ENST00000281708	NM_033632.3	365	Tgg/Cgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993149	72993149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028382-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			772	82	550	0	ENST00000268489.5:c.896C>T	p.Thr299Ile	p.T299I	ENST00000268489	NM_006885.3	299	aCc/aTc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317426	1317426	+	downstream_gene_variant	3'Flank	SNP	C	C	G			P-0028382-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			498	33	364	0				ENST00000381566																																																																																	
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0033315-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			698	725	347	1	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941068	36941068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033315-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			501	216	494	0	ENST00000361632.4:c.271C>T	p.His91Tyr	p.H91Y	ENST00000361632		91	Cac/Tac																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81925123	81925123	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033315-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			201	377	452	0	ENST00000359376.3:c.914A>C	p.Lys305Thr	p.K305T	ENST00000359376	NM_002661.3	305	aAg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578246	7578247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033315-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			278	443	494	0	ENST00000269305.4:c.602dupT	p.Leu201PhefsTer8	p.L201Ffs*8	ENST00000269305	NM_001126112.2	201	ttg/ttTg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25978973	25978973	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033315-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			192	235	358	0	ENST00000435504.4:c.950A>G	p.Asp317Gly	p.D317G	ENST00000435504		317	gAt/gGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971147	21971225	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAA	TGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAA	-			P-0033315-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			206	148	323	0	ENST00000304494.5:c.151-18_211del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971147	21971225	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAA	TGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAA	-			P-0033315-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			206	148	323	0	ENST00000304494.5:c.151-18_211del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971147	21971225	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAA	TGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAA	-			P-0033315-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			206	148	323	0	ENST00000304494.5:c.151-18_211del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	14	620	1	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005264-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			701	77	694	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005264-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			492	373	597	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300206	15300206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005264-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			332	69	747	0	ENST00000263388.2:c.1070G>T	p.Ser357Ile	p.S357I	ENST00000263388	NM_000435.2	357	aGc/aTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006890	47006891	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005264-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			142	155	414	0	ENST00000329236.7:c.13dup	p.Arg5LysfsTer7	p.R5Kfs*7	ENST00000329236	NM_001204466.1	4	gaa/gAaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005264-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			740	74	717	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281344	49281344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202077345		P-0005264-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			315	75	765	0	ENST00000282018.3:c.391G>A	p.Val131Met	p.V131M	ENST00000282018	NM_020377.2	131	Gtg/Atg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198272802	198272802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005264-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			381	58	464	0	ENST00000335508.6:c.1159C>T	p.Arg387Trp	p.R387W	ENST00000335508	NM_012433.2	387	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	163	469	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0041288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	72	499	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435317	56435317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200066146		P-0041288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	224	609	0	ENST00000407977.2:c.1820C>T	p.Ser607Leu	p.S607L	ENST00000407977		607	tCg/tTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245132	46245132	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	142	428	0	ENST00000334344.6:c.3226A>T	p.Lys1076Ter	p.K1076*	ENST00000334344	NM_152641.2	1076	Aag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0041288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	77	385	0				ENST00000310581	NM_198253.2																																																																																
RNF43	54894	MSKCC	GRCh37	17	56434978	56434978	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0041288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	243	628	0	ENST00000407977.2:c.2159C>G	p.Ser720Ter	p.S720*	ENST00000407977		720	tCa/tGa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435159	56435159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	221	625	0	ENST00000407977.2:c.1978C>A	p.Pro660Thr	p.P660T	ENST00000407977		660	Ccc/Acc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929252	44929252	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	206	317	0	ENST00000377967.4:c.2352del	p.Met785TrpfsTer82	p.M785Wfs*82	ENST00000377967	NM_021140.2	784	ttG/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	810	637	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470549	25470549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	392	685	0	ENST00000264709.3:c.925C>T	p.Arg309Cys	p.R309C	ENST00000264709	NM_175629.2	309	Cgc/Tgc																																																																														
MPL	4352	MSKCC	GRCh37	1	43814568	43814568	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	303	424	0	ENST00000372470.3:c.1363T>C	p.Ser455Pro	p.S455P	ENST00000372470	NM_005373.2	455	Tct/Cct																																																																														
EED	8726	MSKCC	GRCh37	11	85967525	85967525	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	11	278	0	ENST00000263360.6:c.523A>T	p.Ile175Leu	p.I175L	ENST00000263360	NM_003797.3	175	Ata/Tta																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195788	102195788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	31	292	0	ENST00000263464.3:c.548T>C	p.Phe183Ser	p.F183S	ENST00000263464	NM_001165.4	183	tTt/tCt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285700	46285700	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	92	288	0	ENST00000334344.6:c.5060A>C	p.Gln1687Pro	p.Q1687P	ENST00000334344	NM_152641.2	1687	cAg/cCg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781211	3781211	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	147	627	0	ENST00000262367.5:c.5154G>A	p.Trp1718Ter	p.W1718*	ENST00000262367	NM_004380.2	1718	tgG/tgA																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647569	23647569	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	165	482	0	ENST00000261584.4:c.298C>G	p.Leu100Val	p.L100V	ENST00000261584	NM_024675.3	100	Ctt/Gtt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827716	72827722	+	frameshift_variant	Frame_Shift_Del	DEL	ATTGGTC	ATTGGTC	-			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	217	449	0	ENST00000268489.5:c.8859_8865del	p.Met2953IlefsTer4	p.M2953Ifs*4	ENST00000268489	NM_006885.3	2953	atGACCAAT/at																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81892767	81892767	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	48	272	0	ENST00000359376.3:c.478A>T	p.Ser160Cys	p.S160C	ENST00000359376	NM_002661.3	160	Agc/Tgc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245821	41245821	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	132	435	0	ENST00000357654.3:c.1727A>C	p.Lys576Thr	p.K576T	ENST00000357654	NM_007294.3	576	aAa/aCa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38954925	38954925	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	21	239	0	ENST00000357387.3:c.2648A>T	p.Tyr883Phe	p.Y883F	ENST00000357387	NM_152756.3	883	tAt/tTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878107	151878107	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	112	416	0	ENST00000262189.6:c.6838G>T	p.Gly2280Ter	p.G2280*	ENST00000262189	NM_170606.2	2280	Gga/Tga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53250052	53250052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	116	564	0	ENST00000375401.3:c.197C>T	p.Thr66Ile	p.T66I	ENST00000375401	NM_004187.3	66	aCc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	38	315	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	18	504	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	33	641	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120491716	120491716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	17	291	0	ENST00000256646.2:c.2513C>T	p.Ser838Phe	p.S838F	ENST00000256646	NM_024408.3	838	tCc/tTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084144	47084144	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	25	428	0	ENST00000409792.3:c.7145C>G	p.Ser2382Cys	p.S2382C	ENST00000409792	NM_014159.6	2382	tCt/tGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164010	47164010	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	13	231	0	ENST00000409792.3:c.2116G>T	p.Glu706Ter	p.E706*	ENST00000409792	NM_014159.6	706	Gaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133249236	133249236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	37	522	0	ENST00000320574.5:c.1663G>T	p.Asp555Tyr	p.D555Y	ENST00000320574	NM_006231.2	555	Gat/Tat																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196068	67196068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	43	512	0	ENST00000312629.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000312629	NM_003952.2	18	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133225976	133225976	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	55	695	0	ENST00000320574.5:c.3921C>G	p.Ile1307Met	p.I1307M	ENST00000320574	NM_006231.2	1307	atC/atG																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780604	56780604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	17	428	0	ENST00000337432.4:c.619C>T	p.His207Tyr	p.H207Y	ENST00000337432	NM_058216.2	207	Cat/Tat																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627280	14627280	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	43	801	0	ENST00000254322.2:c.790G>A	p.Glu264Lys	p.E264K	ENST00000254322	NM_006145.1	264	Gag/Aag																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627553	14627553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	35	513	0	ENST00000254322.2:c.517G>C	p.Glu173Gln	p.E173Q	ENST00000254322	NM_006145.1	173	Gaa/Caa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1918624	1918624	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	24	371	0	ENST00000382891.5:c.787C>G	p.His263Asp	p.H263D	ENST00000382891	NM_133335.3	263	Cac/Gac																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250644	26250644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	31	510	0	ENST00000446824.2:c.190C>A	p.Arg64Ser	p.R64S	ENST00000446824	NM_021018.2	64	Cgc/Agc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005194	150005194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	20	342	0	ENST00000253339.5:c.1031G>C	p.Arg344Thr	p.R344T	ENST00000253339		344	aGa/aCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864299	151864299	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	19	362	0	ENST00000262189.6:c.9682G>C	p.Glu3228Gln	p.E3228Q	ENST00000262189	NM_170606.2	3228	Gag/Cag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933488	39933488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	35	628	0	ENST00000378444.4:c.1111G>A	p.Ala371Thr	p.A371T	ENST00000378444	NM_001123385.1	371	Gcc/Acc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0041305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	113	409	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	119	969	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888165	112888165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	63	664	1	ENST00000351677.2:c.181G>T	p.Asp61Tyr	p.D61Y	ENST00000351677	NM_002834.3	61	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	193	583	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
APC	324	MSKCC	GRCh37	5	112176027	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	58	313	0	ENST00000257430.4:c.4738_4741del	p.Ile1580LeufsTer69	p.I1580Lfs*69	ENST00000257430	NM_000038.5	1579	aTTATt/at																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682806	190682806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	14	323	0	ENST00000441310.2:c.482C>A	p.Thr161Asn	p.T161N	ENST00000441310	NM_000534.4	161	aCt/aAt																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384653	84384653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	54	495	0	ENST00000321945.7:c.790G>A	p.Ala264Thr	p.A264T	ENST00000321945	NM_139076.2	264	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112174269	112174279	+	frameshift_variant	Frame_Shift_Del	DEL	AGTTTTGCAGT	AGTTTTGCAGT	-			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	12	320	0	ENST00000257430.4:c.2978_2988del	p.Lys993IlefsTer11	p.K993Ifs*11	ENST00000257430	NM_000038.5	993	aAGTTTTGCAGT/a																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93953197	93953197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	34	392	0	ENST00000369303.4:c.2944C>A	p.Gln982Lys	p.Q982K	ENST00000369303	NM_004440.3	982	Cag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	48941684	48941684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000828-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			315	28	207	0	ENST00000267163.4:c.994G>C	p.Asp332His	p.D332H	ENST00000267163	NM_000321.2	332	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578281	7578336	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAAC	GGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAAC	-			P-0000828-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			805	130	579	0	ENST00000269305.4:c.559+35_568del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	376	514	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435251	49435251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	142	954	0	ENST00000301067.7:c.6302C>T	p.Ala2101Val	p.A2101V	ENST00000301067	NM_003482.3	2101	gCc/gTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42059142	42059142	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	106	521	0	ENST00000219905.7:c.8864del	p.Pro2955LeufsTer15	p.P2955Lfs*15	ENST00000219905	NM_001164273.1	2954	ctC/ct																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778066	27778066	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	106	760	0	ENST00000369163.2:c.215T>A	p.Val72Glu	p.V72E	ENST00000369163	NM_003536.2	72	gTg/gAg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978470	70978470	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0041355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	75	438	0	ENST00000276594.2:c.1183G>T	p.Glu395Ter	p.E395*	ENST00000276594	NM_024504.3	395	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0041363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	295	691	0	ENST00000269305.4:c.920-1G>C		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
EGFR	1956	MSKCC	GRCh37	7	55240767	55240767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	324	822	0	ENST00000275493.2:c.2011C>T	p.Arg671Cys	p.R671C	ENST00000275493	NM_005228.3	671	Cgc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938654	76938655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	158	248	0	ENST00000373344.5:c.2093dupA	p.Asp699GlyfsTer2	p.D699Gfs*2	ENST00000373344	NM_000489.3	698	aag/aaAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562837	95562837	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	52	217	0	ENST00000343455.3:c.4420A>G	p.Thr1474Ala	p.T1474A	ENST00000343455	NM_177438.2	1474	Acc/Gcc																																																																														
TET2	54790	MSKCC	GRCh37	4	106155439	106155439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	50	257	0	ENST00000380013.4:c.340C>A	p.Gln114Lys	p.Q114K	ENST00000380013	NM_001127208.2	114	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	197	755	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	157	318	1	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332875	152332875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	101	421	0	ENST00000206249.3:c.1181G>A	p.Arg394His	p.R394H	ENST00000206249	NM_000125.3	394	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	77	310	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56787223	56787223	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	118	407	0	ENST00000337432.4:c.709C>T	p.Arg237Ter	p.R237*	ENST00000337432	NM_058216.2	237	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	419	320	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0041421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	319	617	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79965953	79965953	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0041421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	66	434	0	ENST00000265081.6:c.617C>G	p.Ser206Ter	p.S206*	ENST00000265081	NM_002439.4	206	tCa/tGa																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38162198	38162198	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	228	471	0	ENST00000317025.8:c.2518G>C	p.Val840Leu	p.V840L	ENST00000317025	NM_023034.1	840	Gta/Cta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008440-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	112	384	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220428	1220428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008440-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			527	193	719	0	ENST00000326873.7:c.521A>G	p.His174Arg	p.H174R	ENST00000326873	NM_000455.4	174	cAc/cGc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132399	11132399	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0008440-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	163	656	0	ENST00000344626.4:c.2617-2A>T		p.X873_splice	ENST00000344626	NM_003072.3	873																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965240	25965240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008440-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			543	176	514	0	ENST00000435504.4:c.3966G>T	p.Gln1322His	p.Q1322H	ENST00000435504		1322	caG/caT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0034971-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			120	59	458	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911579	134911579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034971-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			309	95	739	1	ENST00000398015.3:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000398015	NM_004441.4	682	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0034971-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			248	202	930	0	ENST00000269305.4:c.672+2T>G		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023662	27023662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034971-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			526	81	468	0	ENST00000324856.7:c.768C>G	p.Ser256Arg	p.S256R	ENST00000324856	NM_006015.4	256	agC/agG																																																																														
TET2	54790	MSKCC	GRCh37	4	106190806	106190806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034971-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			308	39	691	0	ENST00000380013.4:c.4084C>G	p.Leu1362Val	p.L1362V	ENST00000380013	NM_001127208.2	1362	Ctg/Gtg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	123	552	0				ENST00000310581	NM_198253.2																																																																																
ERCC5	2073	MSKCC	GRCh37	13	103525659	103525661	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0041192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	34	450	0	ENST00000355739.4:c.2931_2933del	p.Phe978del	p.F978del	ENST00000355739	NM_000123.3	977	cTGTtt/ctt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040723	47040723	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	23	501	0	ENST00000329236.7:c.1126del	p.Leu376SerfsTer31	p.L376Sfs*31	ENST00000329236	NM_001204466.1	375	tCc/tc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	168	46	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740117	162740117	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0041199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	156	99	0	ENST00000367921.3:c.1321del	p.Met441Ter	p.M441*	ENST00000367921	NM_006182.2	440	gAa/ga																																																																														
RET	5979	MSKCC	GRCh37	10	43622171	43622171	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0041199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	113	107	0	ENST00000355710.3:c.3187+1G>A		p.X1063_splice	ENST00000355710	NM_020975.4	1063																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575070	64575070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	271	183	0	ENST00000337652.1:c.752C>T	p.Ser251Phe	p.S251F	ENST00000337652	NM_130803.2	251	tCc/tTc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40459718	40459718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	257	152	0	ENST00000345506.4:c.1883C>T	p.Thr628Ile	p.T628I	ENST00000345506	NM_003152.3	628	aCc/aTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739811	41739811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	208	151	0	ENST00000242208.4:c.162G>A	p.Met54Ile	p.M54I	ENST00000242208	NM_002192.2	54	atG/atA																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15838370	15838370	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	164	62	0	ENST00000307771.7:c.868C>G	p.Arg290Gly	p.R290G	ENST00000307771	NM_005089.3	290	Cga/Gga																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400817	72400817	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	31	389	0	ENST00000357731.5:c.354T>A	p.Cys118Ter	p.C118*	ENST00000357731	NM_173808.2	118	tgT/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	72	297	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	104	381	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0041253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	106	533	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	169	682	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117319	115117319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	78	335	0	ENST00000257566.3:c.855G>C	p.Gln285His	p.Q285H	ENST00000257566	NM_016569.3	285	caG/caC																																																																														
AGO2	27161	MSKCC	GRCh37	8	141551393	141551393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	146	723	1	ENST00000220592.5:c.1904G>A	p.Arg635Gln	p.R635Q	ENST00000220592	NM_012154.3	635	cGg/cAg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78432622	78432622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	89	392	0	ENST00000370768.2:c.361G>A	p.Glu121Lys	p.E121K	ENST00000370768	NM_003902.3	121	Gaa/Aaa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352684	118352684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	119	581	0	ENST00000534358.1:c.3889C>T	p.Gln1297Ter	p.Q1297*	ENST00000534358	NM_005933.3	1297	Cag/Tag																																																																														
ATR	545	MSKCC	GRCh37	3	142178136	142178136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	94	340	0	ENST00000350721.4:c.7282C>T	p.Leu2428Phe	p.L2428F	ENST00000350721	NM_001184.3	2428	Ctc/Ttc																																																																														
NPM1	4869	MSKCC	GRCh37	5	170827158	170827158	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0041253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	63	332	0	ENST00000296930.5:c.526G>A	p.Asp176Asn	p.D176N	ENST00000296930	NM_002520.6	176	Gat/Aat																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191804	123191805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	84	399	0	ENST00000218089.9:c.1400dupT	p.Phe468LeufsTer5	p.F468Lfs*5	ENST00000218089	NM_001042749.1	465	gtt/gTtt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	136	311	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41274897	41274897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	262	501	0	ENST00000349496.5:c.1147T>C	p.Trp383Arg	p.W383R	ENST00000349496	NM_001904.3	383	Tgg/Cgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577510	7577519	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTGTGATG	CAGTGTGATG	-			P-0041268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	286	632	0	ENST00000269305.4:c.762_771del	p.Ile254MetfsTer88	p.I254Mfs*88	ENST00000269305	NM_001126112.2	254	atCATCACACTG/at																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56176581	56176581	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	220	494	0	ENST00000399503.3:c.2131A>T	p.Lys711Ter	p.K711*	ENST00000399503	NM_005921.1	711	Aaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	182	353	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467748	50467748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	112	572	0	ENST00000331340.3:c.983G>A	p.Arg328His	p.R328H	ENST00000331340	NM_006060.4	328	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	196	155	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0041272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	151	101	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	317	143	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521120	187521120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	123	464	0	ENST00000441802.2:c.12035C>T	p.Thr4012Met	p.T4012M	ENST00000441802	NM_005245.3	4012	aCg/aTg																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1940200	1940200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	93	212	0	ENST00000382891.5:c.1697C>T	p.Thr566Met	p.T566M	ENST00000382891	NM_133335.3	566	aCg/aTg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25458575	25458575	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	64	253	0	ENST00000264709.3:c.2597+1G>T		p.X866_splice	ENST00000264709	NM_175629.2	866																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023720	27023720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	153	306	0	ENST00000324856.7:c.826G>A	p.Gly276Arg	p.G276R	ENST00000324856	NM_006015.4	276	Gga/Aga																																																																														
PARP1	142	MSKCC	GRCh37	1	226555254	226555254	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	179	470	0	ENST00000366794.5:c.2333T>A	p.Leu778His	p.L778H	ENST00000366794	NM_001618.3	778	cTc/cAc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243828168	243828168	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	163	90	0	ENST00000263826.5:c.190del	p.Thr64GlnfsTer10	p.T64Qfs*10	ENST00000263826	NM_005465.4	64	Aca/ca																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662366	67662366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	163	564	0	ENST00000264010.4:c.1612C>T	p.Leu538Phe	p.L538F	ENST00000264010	NM_006565.3	538	Ctc/Ttc																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204732747	204732747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	126	370	0	ENST00000302823.3:c.82C>T	p.Leu28Phe	p.L28F	ENST00000302823	NM_005214.4	28	Ctt/Ttt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68999983	68999985	+	missense_variant	Missense_Mutation	ONP	TGA	TGA	CGT			P-0041274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	132	351	0	ENST00000288368.4:c.2052_2054delinsCGT	p.Asp685Val	p.D685V	ENST00000288368	NM_024870.2	684	gcTGAt/gcCGTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	164	331	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0041383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	154	540	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175101	112175101	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0041383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	34	213	0	ENST00000257430.4:c.3814del	p.Ser1272GlnfsTer16	p.S1272Qfs*16	ENST00000257430	NM_000038.5	1270	tgT/tg																																																																														
CDH1	999	MSKCC	GRCh37	16	68842468	68842468	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0041383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	66	496	0	ENST00000261769.5:c.529C>T	p.Gln177Ter	p.Q177*	ENST00000261769	NM_004360.3	177	Cag/Tag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976556	18976577	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCCGGCCTCTCCCAGCCGGA	AGCCCGGCCTCTCCCAGCCGGA	TGCCC			P-0041383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	67	749	2	ENST00000262803.5:c.3206_3227delinsTGCCC	p.Gln1069LeufsTer11	p.Q1069Lfs*11	ENST00000262803	NM_002911.3	1069	cAGCCCGGCCTCTCCCAGCCGGAg/cTGCCCg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31508823	31508823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	150	580	0	ENST00000344624.3:c.1492G>A	p.Asp498Asn	p.D498N	ENST00000344624		498	Gac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112175903	112175903	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	24	238	0	ENST00000257430.4:c.4612G>T	p.Glu1538Ter	p.E1538*	ENST00000257430	NM_000038.5	1538	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			518	230	403	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0037465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			578	276	650	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0037465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			610	203	541	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256243	16256243	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	111	611	0	ENST00000375759.3:c.3508C>G	p.Arg1170Gly	p.R1170G	ENST00000375759	NM_015001.2	1170	Cga/Gga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982329	201982330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			844	153	739	0	ENST00000359651.3:c.710dup	p.Asp239GlyfsTer62	p.D239Gfs*62	ENST00000359651		236	-/A																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405688	139405688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	294	858	0	ENST00000277541.6:c.2503C>T	p.Pro835Ser	p.P835S	ENST00000277541	NM_017617.3	835	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	127	746	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
RAB35	11021	MSKCC	GRCh37	12	120535161	120535161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	86	488	1	ENST00000229340.5:c.494C>T	p.Thr165Met	p.T165M	ENST00000229340	NM_006861.6	165	aCg/aTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108059	30108059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	99	697	1	ENST00000331968.5:c.748C>A	p.Gln250Lys	p.Q250K	ENST00000331968	NM_002742.2	250	Caa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116423486	116423486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45454696		P-0041163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	58	382	0	ENST00000397752.3:c.3761G>A	p.Ser1254Asn	p.S1254N	ENST00000397752	NM_000245.2	1254	aGt/aAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0041165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	429	682	0	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735635	204735635	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	281	434	0	ENST00000302823.3:c.436G>T	p.Gly146Ter	p.G146*	ENST00000302823	NM_005214.4	146	Gga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332738	65332738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	268	460	4	ENST00000342505.4:c.801G>T	p.Lys267Asn	p.K267N	ENST00000342505	NM_002227.2	267	aaG/aaT																																																																														
RB1	5925	MSKCC	GRCh37	13	48934244	48934244	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	198	404	0	ENST00000267163.4:c.699del	p.Met233IlefsTer31	p.M233Ifs*31	ENST00000267163	NM_000321.2	233	atG/at																																																																														
TP63	8626	MSKCC	GRCh37	3	189455613	189455613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	289	508	4	ENST00000264731.3:c.147C>A	p.Phe49Leu	p.F49L	ENST00000264731	NM_003722.4	49	ttC/ttA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197779	66197779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	403	403	2	ENST00000273854.3:c.2920C>A	p.Leu974Ile	p.L974I	ENST00000273854	NM_004439.5	974	Cta/Ata																																																																														
STK19	8859	MSKCC	GRCh37	6	31948296	31948296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	380	777	5	ENST00000375331.2:c.872C>T	p.Ala291Val	p.A291V	ENST00000375331	NM_004197.1	291	gCt/gTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255773	16255773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	148	453	0	ENST00000375759.3:c.3038G>A	p.Arg1013His	p.R1013H	ENST00000375759	NM_015001.2	1013	cGc/cAc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599897	28599897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145754239		P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	180	655	0	ENST00000253063.3:c.779C>T	p.Ala260Val	p.A260V	ENST00000253063	NM_031459.4	260	gCg/gTg																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363231	40363231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	95	542	0	ENST00000397332.2:c.998C>T	p.Ala333Val	p.A333V	ENST00000397332	NM_001033082.2	333	gCg/gTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70406655	70406655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	34	588	2	ENST00000373644.4:c.4169G>T	p.Ser1390Ile	p.S1390I	ENST00000373644	NM_030625.2	1390	aGt/aTt																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200122	67200122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	212	642	0	ENST00000312629.5:c.509C>T	p.Thr170Met	p.T170M	ENST00000312629	NM_003952.2	170	aCg/aTg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202635	67202635	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202063609		P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	171	594	0	ENST00000312629.5:c.1444C>T	p.Arg482Cys	p.R482C	ENST00000312629	NM_003952.2	482	Cgc/Tgc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	90	227	1	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434502	49434502	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	196	726	0	ENST00000301067.7:c.7051G>T	p.Glu2351Ter	p.E2351*	ENST00000301067	NM_003482.3	2351	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	90	659	1	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856392	111856392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	75	241	1	ENST00000341259.2:c.443G>A	p.Arg148His	p.R148H	ENST00000341259	NM_005475.2	148	cGc/cAc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	170	492	1	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435057	110435057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	244	781	0	ENST00000375856.3:c.3344C>T	p.Ser1115Leu	p.S1115L	ENST00000375856	NM_003749.2	1115	tCg/tTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435136	110435136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	241	726	0	ENST00000375856.3:c.3265G>C	p.Ala1089Pro	p.A1089P	ENST00000375856	NM_003749.2	1089	Gcc/Ccc																																																																														
MGA	23269	MSKCC	GRCh37	15	42021365	42021365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	147	359	0	ENST00000219905.7:c.3661C>T	p.Arg1221Trp	p.R1221W	ENST00000219905	NM_001164273.1	1221	Cgg/Tgg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465624	99465624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	130	541	0	ENST00000268035.6:c.2449G>A	p.Ala817Thr	p.A817T	ENST00000268035	NM_000875.3	817	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830755	3830755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	105	471	0	ENST00000262367.5:c.1801C>T	p.Arg601Trp	p.R601W	ENST00000262367	NM_004380.2	601	Cgg/Tgg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041941	14041941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	113	371	0	ENST00000311895.7:c.2488G>A	p.Ala830Thr	p.A830T	ENST00000311895	NM_005236.2	830	Gcc/Acc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56871638	56871638	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs199837299		P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	22	424	1	ENST00000308159.5:c.2018G>A	p.Arg673Gln	p.R673Q	ENST00000308159	NM_014669.4	673	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	91	393	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831707	72831707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	151	608	0	ENST00000268489.5:c.4874G>A	p.Arg1625Gln	p.R1625Q	ENST00000268489	NM_006885.3	1625	cGg/cAg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40451823	40451823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	111	446	1	ENST00000345506.4:c.605C>T	p.Thr202Met	p.T202M	ENST00000345506	NM_003152.3	202	aCg/aTg																																																																														
MSI2	124540	MSKCC	GRCh37	17	55729499	55729499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	240	781	1	ENST00000284073.2:c.767C>T	p.Ala256Val	p.A256V	ENST00000284073	NM_138962.2	256	gCg/gTg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78919507	78919507	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	29	622	0	ENST00000306801.3:c.3069delC	p.Gly1024AlafsTer6	p.G1024Afs*6	ENST00000306801	NM_020761.2	1022	aaC/aa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096021	11096021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	228	801	3	ENST00000344626.4:c.295C>T	p.Arg99Trp	p.R99W	ENST00000344626	NM_003072.3	99	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097604	11097604	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	188	757	0	ENST00000344626.4:c.788del	p.Pro263GlnfsTer40	p.P263Qfs*40	ENST00000344626	NM_003072.3	262	Ccc/cc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	163	765	0	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152070	11152070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	196	597	0	ENST00000344626.4:c.4258G>A	p.Gly1420Ser	p.G1420S	ENST00000344626	NM_003072.3	1420	Ggc/Agc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	172	695	4	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086076	16086076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	164	653	0	ENST00000281043.3:c.1252G>A	p.Ala418Thr	p.A418T	ENST00000281043	NM_005378.4	418	Gcc/Acc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702239	47702239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	187	269	0	ENST00000233146.2:c.1835C>A	p.Ser612Ter	p.S612*	ENST00000233146	NM_000251.2	612	tCa/tAa																																																																														
AURKA	6790	MSKCC	GRCh37	20	54945359	54945359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	71	557	0	ENST00000312783.6:c.1067C>T	p.Ala356Val	p.A356V	ENST00000312783	NM_198436.1	356	gCc/gTc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	177	708	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
RHOA	387	MSKCC	GRCh37	3	49400009	49400009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	228	647	2	ENST00000418115.1:c.328G>A	p.Val110Met	p.V110M	ENST00000418115	NM_001664.2	110	Gtg/Atg																																																																														
MITF	4286	MSKCC	GRCh37	3	70014202	70014202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143537610		P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	215	729	2	ENST00000352241.4:c.1366G>A	p.Gly456Arg	p.G456R	ENST00000352241	NM_198159.2	456	Gga/Aga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027014	71027014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	205	541	0	ENST00000318789.4:c.1313G>A	p.Arg438Gln	p.R438Q	ENST00000318789	NM_032682.5	438	cGg/cAg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	198	600	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	263	815	0	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515165	149515165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	203	675	0	ENST00000261799.4:c.317G>A	p.Arg106His	p.R106H	ENST00000261799	NM_002609.3	106	cGt/cAt																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225647	26225647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	240	515	0	ENST00000360408.1:c.265G>A	p.Ala89Thr	p.A89T	ENST00000360408	NM_003532.2	89	Gcg/Acg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912306	29912306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	204	640	0	ENST00000376809.5:c.925G>A	p.Val309Met	p.V309M	ENST00000376809	NM_002116.7	309	Gtg/Atg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552891	106552891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	309	747	0	ENST00000369096.4:c.856C>T	p.Arg286Cys	p.R286C	ENST00000369096	NM_001198.3	286	Cgt/Tgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845415	151845415	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	209	633	0	ENST00000262189.6:c.13597C>T	p.Arg4533Ter	p.R4533*	ENST00000262189	NM_170606.2	4533	Cga/Tga																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38162117	38162117	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115403388		P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	183	530	0	ENST00000317025.8:c.2599G>A	p.Val867Ile	p.V867I	ENST00000317025	NM_023034.1	867	Gtt/Att																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460448	8460448	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	178	488	0	ENST00000356435.5:c.3838A>T	p.Ile1280Phe	p.I1280F	ENST00000356435		1280	Atc/Ttc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98212182	98212182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	115	361	1	ENST00000331920.6:c.3490G>A	p.Val1164Ile	p.V1164I	ENST00000331920	NM_000264.3	1164	Gtt/Att																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911649	39911649	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	33	553	1	ENST00000378444.4:c.4981C>T	p.Arg1661Ter	p.R1661*	ENST00000378444	NM_001123385.1	1661	Cga/Tga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922973	44922973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	231	669	1	ENST00000377967.4:c.1834C>T	p.Arg612Ter	p.R612*	ENST00000377967	NM_021140.2	612	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70349973	70349973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	219	718	0	ENST00000374080.3:c.3956G>A	p.Arg1319His	p.R1319H	ENST00000374080		1319	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010980-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			270	114	299	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845854	72845855	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010980-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			494	135	475	0	ENST00000268489.5:c.3612dup	p.Pro1205SerfsTer11	p.P1205Sfs*11	ENST00000268489	NM_006885.3	1204	-/T																																																																														
STK11	6794	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010980-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			322	357	491	0	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602737	10602737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010980-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			425	432	744	1	ENST00000171111.5:c.841C>A	p.Leu281Met	p.L281M	ENST00000171111	NM_203500.1	281	Ctg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098601	11098601	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010980-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			314	389	640	0	ENST00000344626.4:c.1118+1G>T		p.X373_splice	ENST00000344626	NM_003072.3	373																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662958	227662958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010980-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			832	170	689	0	ENST00000305123.5:c.497T>C	p.Val166Ala	p.V166A	ENST00000305123	NM_005544.2	166	gTg/gCg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164513	47164513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010980-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			232	78	295	0	ENST00000409792.3:c.1613G>T	p.Gly538Val	p.G538V	ENST00000409792	NM_014159.6	538	gGa/gTa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288645	33288645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010980-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			276	235	336	0	ENST00000374542.5:c.907G>A	p.Gly303Ser	p.G303S	ENST00000374542	NM_001141970.1	303	Ggc/Agc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010980-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			292	165	640	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010980-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			292	165	640	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010980-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			292	165	640	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
ARAF	369	MSKCC	GRCh37	X	47430406	47430406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010980-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			613	55	559	0	ENST00000377045.4:c.1681C>T	p.Pro561Ser	p.P561S	ENST00000377045	NM_001654.4	561	Ccc/Tcc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411922	63411922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010980-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			726	313	849	0	ENST00000330258.3:c.1245G>T	p.Met415Ile	p.M415I	ENST00000330258	NM_152424.3	415	atG/atT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445007	89445007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023910-T09-IM6									Unknown	SOMATIC				MSK-IMPACT			176	61	620	0	ENST00000336596.2:c.1327A>G	p.Ile443Val	p.I443V	ENST00000336596	NM_005233.5	443	Att/Gtt																																																																														
TERT	7015	MSKCC	GRCh37	5	1280314	1280314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023910-T09-IM6									Unknown	SOMATIC				MSK-IMPACT			324	404	1290	0	ENST00000310581.5:c.1909G>A	p.Asp637Asn	p.D637N	ENST00000310581	NM_198253.2	637	Gac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241704	55241704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023910-T09-IM6									Unknown	SOMATIC				MSK-IMPACT			278	31	840	0	ENST00000275493.2:c.2152C>G	p.Leu718Val	p.L718V	ENST00000275493	NM_005228.3	718	Ctg/Gtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241705	55241705	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023910-T09-IM6									Unknown	SOMATIC				MSK-IMPACT			285	25	846	1	ENST00000275493.2:c.2153T>A	p.Leu718Gln	p.L718Q	ENST00000275493	NM_005228.3	718	cTg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023910-T09-IM6									Unknown	SOMATIC				MSK-IMPACT			265	34	846	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023910-T09-IM6									Unknown	SOMATIC				MSK-IMPACT			93	186	756	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039380	47039380	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023910-T09-IM6									Unknown	SOMATIC				MSK-IMPACT			36	200	1037	0	ENST00000329236.7:c.772A>T	p.Lys258Ter	p.K258*	ENST00000329236	NM_001204466.1	258	Aag/Tag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0037699-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			191	85	638	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937422	178937422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037699-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			93	60	283	0	ENST00000263967.3:c.1810T>C	p.Cys604Arg	p.C604R	ENST00000263967	NM_006218.2	604	Tgt/Cgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037699-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			90	70	565	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	42	337	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	83	544	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107136	27107137	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0039456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	60	441	0	ENST00000324856.7:c.6749_6750del	p.Glu2250ValfsTer27	p.E2250Vfs*27	ENST00000324856	NM_006015.4	2249	tcAGag/tcag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	151	811	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460354	149460354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	67	483	0	ENST00000286301.3:c.283G>A	p.Ala95Thr	p.A95T	ENST00000286301	NM_005211.3	95	Gcc/Acc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163642	32163642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	50	352	0	ENST00000375023.3:c.5584C>G	p.Arg1862Gly	p.R1862G	ENST00000375023	NM_004557.3	1862	Cgg/Ggg																																																																														
MYCL	4610	MSKCC	GRCh37	1	40367115	40367115	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	28	447	0	ENST00000397332.2:c.82G>A	p.Gly28Arg	p.G28R	ENST00000397332	NM_001033082.2	28	Gga/Aga																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097802	8097802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	79	627	0	ENST00000346208.3:c.184C>T	p.Pro62Ser	p.P62S	ENST00000346208		62	Ccc/Tcc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115266560	115266560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	58	544	0	ENST00000438362.2:c.1955G>A	p.Arg652Lys	p.R652K	ENST00000438362	NM_001242891.1	652	aGg/aAg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416809	416809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	74	405	0	ENST00000399788.2:c.3741G>T	p.Gln1247His	p.Q1247H	ENST00000399788	NM_001042603.1	1247	caG/caT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443958	49443958	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	101	763	1	ENST00000301067.7:c.3413del	p.Gly1138AspfsTer26	p.G1138Dfs*26	ENST00000301067	NM_003482.3	1138	gGa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	99	651	0	ENST00000269305.4:c.610delG	p.Glu204SerfsTer43	p.E204Sfs*43	ENST00000269305	NM_001126112.2	204	Gag/ag																																																																														
GNA11	2767	MSKCC	GRCh37	19	3113380	3113380	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	79	700	0	ENST00000078429.4:c.374A>T	p.Glu125Val	p.E125V	ENST00000078429	NM_002067.2	125	gAg/gTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610394	10610394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	47	751	0	ENST00000171111.5:c.316G>A	p.Val106Ile	p.V106I	ENST00000171111	NM_203500.1	106	Gtc/Atc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292540	15292540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	83	801	0	ENST00000263388.2:c.2639C>A	p.Ala880Asp	p.A880D	ENST00000263388	NM_000435.2	880	gCc/gAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056341	180056341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	105	806	1	ENST00000261937.6:c.903C>A	p.Ser301Arg	p.S301R	ENST00000261937	NM_182925.4	301	agC/agA																																																																														
LYN	4067	MSKCC	GRCh37	8	56863315	56863315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	65	482	0	ENST00000519728.1:c.459C>A	p.Phe153Leu	p.F153L	ENST00000519728	NM_002350.3	153	ttC/ttA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974698	21974699	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	65	374	0	ENST00000304494.5:c.128_129del	p.Ser43IlefsTer76	p.S43Ifs*76	ENST00000304494	NM_000077.4	43	aGT/a																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974698	21974699	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	65	374	0	ENST00000304494.5:c.128_129del	p.Ser43IlefsTer76	p.S43Ifs*76	ENST00000304494	NM_000077.4	43	aGT/a																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405686	139405687	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	110	890	0	ENST00000277541.6:c.2504_2505insT	p.Ser836GlnfsTer16	p.S836Qfs*16	ENST00000277541	NM_017617.3	835	ccc/ccTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	385	813	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609934	81609934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	31	346	0	ENST00000298171.2:c.1532C>T	p.Thr511Met	p.T511M	ENST00000298171	NM_000369.2	511	aCg/aTg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647301	23647301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	94	611	0	ENST00000261584.4:c.566G>A	p.Arg189Lys	p.R189K	ENST00000261584	NM_024675.3	189	aGa/aAa																																																																														
PARK2	5071	MSKCC	GRCh37	6	161807867	161807867	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	16	446	0	ENST00000366898.1:c.1126G>T	p.Glu376Ter	p.E376*	ENST00000366898	NM_004562.2	376	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	181	110	0				ENST00000310581	NM_198253.2																																																																																
MAPK1	5594	MSKCC	GRCh37	22	22160227	22160227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	104	107	0	ENST00000215832.6:c.404G>A	p.Arg135Lys	p.R135K	ENST00000215832	NM_002745.4	135	aGa/aAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492752	56492752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	58	187	0	ENST00000407977.2:c.187C>T	p.Leu63Phe	p.L63F	ENST00000407977		63	Ctc/Ttc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468039	120468039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	230	235	0	ENST00000256646.2:c.4400C>G	p.Ser1467Cys	p.S1467C	ENST00000256646	NM_024408.3	1467	tCc/tGc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984339	201984340	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	545	193	0	ENST00000359651.3:c.1005dup	p.Tyr336LeufsTer135	p.Y336Lfs*135	ENST00000359651		335	tac/taCc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	338199	338199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	52	303	0	ENST00000262320.3:c.2512G>C	p.Glu838Gln	p.E838Q	ENST00000262320	NM_003502.3	838	Gag/Cag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878254	151878254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	183	199	0	ENST00000262189.6:c.6691G>C	p.Glu2231Gln	p.E2231Q	ENST00000262189	NM_170606.2	2231	Gag/Cag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929114	44929115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	242	224	0	ENST00000377967.4:c.2216dup	p.Asn739LysfsTer11	p.N739Kfs*11	ENST00000377967	NM_021140.2	738	-/A																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	204	556	1	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591076	67591076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	109	296	0	ENST00000274335.5:c.1669C>T	p.Arg557Ter	p.R557*	ENST00000274335		557	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117679033	117679033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	44	349	0	ENST00000368508.3:c.3788C>T	p.Pro1263Leu	p.P1263L	ENST00000368508	NM_002944.2	1263	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288489	15288489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	78	266	0	ENST00000263388.2:c.4250G>T	p.Cys1417Phe	p.C1417F	ENST00000263388	NM_000435.2	1417	tGc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579584	7579651	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCC	AGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCC	-			P-0040921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	257	506	0	ENST00000269305.4:c.96+49_103del		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
IL7R	3575	MSKCC	GRCh37	5	35874549	35874549	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0040921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	154	387	0	ENST00000303115.3:c.707-2A>T		p.X236_splice	ENST00000303115	NM_002185.3	236																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56176593	56176593	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	163	349	0	ENST00000399503.3:c.2143G>T	p.Gly715Ter	p.G715*	ENST00000399503	NM_005921.1	715	Gga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100312	157100312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	70	234	0	ENST00000346085.5:c.1249C>G	p.Pro417Ala	p.P417A	ENST00000346085	NM_020732.3	417	Ccg/Gcg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486301	8486301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	70	317	0	ENST00000356435.5:c.2516C>T	p.Ala839Val	p.A839V	ENST00000356435		839	gCt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	78	332	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	271	702	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	90	427	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655380	67655380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	99	497	0	ENST00000264010.4:c.1243C>T	p.Arg415Trp	p.R415W	ENST00000264010	NM_006565.3	415	Cgg/Tgg																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225474	26225474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	105	352	0	ENST00000360408.1:c.92C>T	p.Pro31Leu	p.P31L	ENST00000360408	NM_003532.2	31	cCg/cTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55971127	55971127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	132	547	0	ENST00000263923.4:c.1670C>A	p.Pro557His	p.P557H	ENST00000263923	NM_002253.2	557	cCt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175145	112175146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	57	204	0	ENST00000257430.4:c.3855dup	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1285	gat/gaTt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722030	176722030	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	51	458	0	ENST00000439151.2:c.7661A>G	p.Gln2554Arg	p.Q2554R	ENST00000439151	NM_022455.4	2554	cAg/cGg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928994	44928998	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCT	CCTCT	-			P-0040923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	152	504	0	ENST00000377967.4:c.2100_2104del	p.Ser701HisfsTer27	p.S701Hfs*27	ENST00000377967	NM_021140.2	698	caCCTCTcc/cacc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	199	397	0	ENST00000288135.5:c.1676T>G	p.Val559Gly	p.V559G	ENST00000288135	NM_000222.2	559	gTt/gGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	374	336	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579317	7579317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	251	547	0	ENST00000269305.4:c.370delT	p.Cys124AlafsTer46	p.C124Afs*46	ENST00000269305	NM_001126112.2	124	Tgc/gc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562190	21562190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	715	810	1	ENST00000382592.4:c.1729C>T	p.Pro577Ser	p.P577S	ENST00000382592	NM_014572.2	577	Ccc/Tcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974773	21974775	+	inframe_deletion	In_Frame_Del	DEL	CGT	CGT	-			P-0040925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	43	300	0	ENST00000304494.5:c.52_54del	p.Thr18del	p.T18del	ENST00000304494	NM_000077.4	18	ACG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974773	21974775	+	inframe_deletion	In_Frame_Del	DEL	CGT	CGT	-			P-0040925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	43	300	0	ENST00000304494.5:c.52_54del	p.Thr18del	p.T18del	ENST00000304494	NM_000077.4	18	ACG/-																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197697	123197698	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GC	GC	TT			P-0040925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	42	277	1	ENST00000218089.9:c.1822-1_1822delinsTT		p.X608_splice	ENST00000218089	NM_001042749.1	608																																																																															
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	328	759	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	1001	768	2	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
EP300	2033	MSKCC	GRCh37	22	41572527	41572527	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	42	644	0	ENST00000263253.7:c.5056T>G	p.Cys1686Gly	p.C1686G	ENST00000263253	NM_001429.3	1686	Tgt/Ggt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069572	69069572	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	80	409	0	ENST00000288368.4:c.4247A>C	p.Glu1416Ala	p.E1416A	ENST00000288368	NM_024870.2	1416	gAa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	226	749	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731202	162731202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	40	448	1	ENST00000367921.3:c.1057G>T	p.Ala353Ser	p.A353S	ENST00000367921	NM_006182.2	353	Gca/Tca																																																																														
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	138	784	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0040984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	82	369	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	148	487	1	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602698	10602698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			713	158	749	0	ENST00000171111.5:c.880G>T	p.Asp294Tyr	p.D294Y	ENST00000171111	NM_203500.1	294	Gac/Tac																																																																														
CD276	80381	MSKCC	GRCh37	15	73994779	73994779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	201	701	0	ENST00000318443.5:c.263C>G	p.Ala88Gly	p.A88G	ENST00000318443	NM_001024736.1	88	gCc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	247	548	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	86	480	0	ENST00000342988.3:c.1051G>C	p.Asp351His	p.D351H	ENST00000342988	NM_005359.5	351	Gat/Cat																																																																														
MGA	23269	MSKCC	GRCh37	15	41988555	41988555	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	91	558	0	ENST00000219905.7:c.1349del	p.Pro450HisfsTer12	p.P450Hfs*12	ENST00000219905	NM_001164273.1	449	agC/ag																																																																														
NF1	4763	MSKCC	GRCh37	17	29657370	29657370	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	77	609	0	ENST00000358273.4:c.5666A>T	p.Glu1889Val	p.E1889V	ENST00000358273	NM_001042492.2	1889	gAg/gTg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046386	128046386	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	87	460	0	ENST00000285398.2:c.877del	p.Ala293GlnfsTer18	p.A293Qfs*18	ENST00000285398	NM_000122.1	293	Gca/ca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47108609	47108609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	79	296	0	ENST00000409792.3:c.6061-1G>C		p.X2021_splice	ENST00000409792	NM_014159.6	2021																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71027114	71027114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	84	584	0	ENST00000318789.4:c.1213C>G	p.His405Asp	p.H405D	ENST00000318789	NM_032682.5	405	Cat/Gat																																																																														
ATR	545	MSKCC	GRCh37	3	142280188	142280188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	97	524	0	ENST00000350721.4:c.1246C>A	p.Gln416Lys	p.Q416K	ENST00000350721	NM_001184.3	416	Caa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936070	178936070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	36	415	0	ENST00000263967.3:c.1612G>A	p.Asp538Asn	p.D538N	ENST00000263967	NM_006218.2	538	Gat/Aat																																																																														
SDHA	6389	MSKCC	GRCh37	5	233660	233660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	44	115	0	ENST00000264932.6:c.964C>T	p.Gln322Ter	p.Q322*	ENST00000264932	NM_004168.2	322	Caa/Taa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460555	149460555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	117	788	0	ENST00000286301.3:c.82C>G	p.Pro28Ala	p.P28A	ENST00000286301	NM_005211.3	28	Cct/Gct																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950455	68950455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	55	452	0	ENST00000288368.4:c.767C>G	p.Ser256Cys	p.S256C	ENST00000288368	NM_024870.2	256	tCt/tGt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460567	8460567	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	75	374	0	ENST00000356435.5:c.3719T>A	p.Met1240Lys	p.M1240K	ENST00000356435		1240	aTg/aAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0041117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	115	365	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0041117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	155	339	1				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	72	430	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0041120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	83	368	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0041120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	100	441	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435297	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGCGGT	GGCGGT	-			P-0041120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	91	194	0	ENST00000375856.3:c.3099_3104del	p.Pro1035_Pro1036del	p.P1035_P1036del	ENST00000375856	NM_003749.2	1033	ccACCGCCg/ccg																																																																														
RET	5979	MSKCC	GRCh37	10	43619223	43619223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	124	635	0	ENST00000355710.3:c.2906G>A	p.Arg969Gln	p.R969Q	ENST00000355710	NM_020975.4	969	cGg/cAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222823	5222823	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201423065		P-0041120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	185	619	1	ENST00000357368.4:c.2980G>A	p.Ala994Thr	p.A994T	ENST00000357368	NM_002850.3	994	Gcg/Acg																																																																														
APC	324	MSKCC	GRCh37	5	112102032	112102035	+	frameshift_variant	Frame_Shift_Del	DEL	AAAC	AAAC	-			P-0041120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	38	299	0	ENST00000257430.4:c.147_150del	p.Lys49AsnfsTer20	p.K49Nfs*20	ENST00000257430	NM_000038.5	49	AAACaa/aa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324622	31324622	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0041120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	99	569	0	ENST00000412585.2:c.186del	p.Ser62ArgfsTer15	p.S62Rfs*15	ENST00000412585	NM_005514.6	62	agC/ag																																																																														
AR	367	MSKCC	GRCh37	X	66765217	66765217	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	73	352	1	ENST00000374690.3:c.229C>T	p.Gln77Ter	p.Q77*	ENST00000374690	NM_000044.3	77	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	64	385	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140477807	140477807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	84	511	0	ENST00000288602.6:c.1501G>A	p.Glu501Lys	p.E501K	ENST00000288602	NM_004333.4	501	Gaa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11291488	11291488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	66	497	0	ENST00000361445.4:c.2518G>T	p.Ala840Ser	p.A840S	ENST00000361445	NM_004958.3	840	Gct/Tct																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097657	8097657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	70	432	0	ENST00000346208.3:c.39C>A	p.His13Gln	p.H13Q	ENST00000346208		13	caC/caA																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63759849	63759849	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	33	325	0	ENST00000279873.7:c.503-1G>C		p.X168_splice	ENST00000279873	NM_032199.2	168																																																																															
PDCD1	5133	MSKCC	GRCh37	2	242794889	242794889	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	132	937	0	ENST00000334409.5:c.320A>T	p.His107Leu	p.H107L	ENST00000334409	NM_005018.2	107	cAc/cTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133621	55133621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	76	502	0	ENST00000257290.5:c.925G>T	p.Val309Phe	p.V309F	ENST00000257290	NM_006206.4	309	Gtc/Ttc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149447870	149447870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	118	977	0	ENST00000286301.3:c.1534G>T	p.Glu512Ter	p.E512*	ENST00000286301	NM_005211.3	512	Gag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545811	106545811	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	65	448	0	ENST00000359195.3:c.3288A>T	p.Gln1096His	p.Q1096H	ENST00000359195	NM_002649.2	1096	caA/caT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404368	139404368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1203	137	949	0	ENST00000277541.6:c.2786C>T	p.Ala929Val	p.A929V	ENST00000277541	NM_017617.3	929	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0041127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	37	849	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0041127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	17	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	449	868	4	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778083	3778083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	253	1226	0	ENST00000262367.5:c.6965C>T	p.Ser2322Leu	p.S2322L	ENST00000262367	NM_004380.2	2322	tCa/tTa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898765	134898765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	117	449	0	ENST00000398015.3:c.1823G>T	p.Arg608Leu	p.R608L	ENST00000398015	NM_004441.4	608	cGg/cTg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167753	185167753	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0041150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	179	620	0	ENST00000265026.3:c.1076C>G	p.Ser359Ter	p.S359*	ENST00000265026	NM_004721.4	359	tCa/tGa																																																																														
TP63	8626	MSKCC	GRCh37	3	189604340	189604340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0041150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	114	446	0	ENST00000264731.3:c.1507A>G	p.Ile503Val	p.I503V	ENST00000264731	NM_003722.4	503	Att/Gtt																																																																														
ATRX	546	MSKCC	GRCh37	X	76938364	76938364	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0041150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	288	663	0	ENST00000373344.5:c.2384del	p.Gly795AlafsTer8	p.G795Afs*8	ENST00000373344	NM_000489.3	795	gGc/gc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0041185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	63	222	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	97	442	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0041186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	108	661	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108168020	108168020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	18	215	1	ENST00000278616.4:c.4916C>T	p.Pro1639Leu	p.P1639L	ENST00000278616	NM_000051.3	1639	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	24	337	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
TET2	54790	MSKCC	GRCh37	4	106193787	106193787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	17	257	0	ENST00000380013.4:c.4249G>A	p.Val1417Ile	p.V1417I	ENST00000380013	NM_001127208.2	1417	Gtt/Att																																																																														
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	15	271	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267480	198267480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	41	437	0	ENST00000335508.6:c.1877A>G	p.Asn626Ser	p.N626S	ENST00000335508	NM_012433.2	626	aAc/aGc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28624238	28624238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	38	580	0	ENST00000241453.7:c.736A>G	p.Thr246Ala	p.T246A	ENST00000241453	NM_004119.2	246	Aca/Gca																																																																														
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	56	714	0	ENST00000326873.7:c.724G>C	p.Gly242Arg	p.G242R	ENST00000326873	NM_000455.4	242	Ggg/Cgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610149	10610166	+	inframe_deletion	In_Frame_Del	DEL	GATGCCGATGGCATTGCT	GATGCCGATGGCATTGCT	-			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	91	896	0	ENST00000171111.5:c.544_561del	p.Ser182_Ile187del	p.S182_I187del	ENST00000171111	NM_203500.1	182	AGCAATGCCATCGGCATC/-																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379763	17379763	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	75	994	0	ENST00000359435.4:c.148G>T	p.Glu50Ter	p.E50*	ENST00000359435	NM_001033549.1	50	Gag/Tag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198281487	198281488	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATC			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	35	523	0	ENST00000335508.6:c.643_644insGAT	p.Lys214_Leu215insArg	p.K214_L215insR	ENST00000335508	NM_012433.2	215	cta/cGATta																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426647	212426647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	39	574	0	ENST00000342788.4:c.2468G>T	p.Trp823Leu	p.W823L	ENST00000342788	NM_005235.2	823	tGg/tTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673085	30673085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	55	666	0	ENST00000376406.3:c.3875G>T	p.Arg1292Leu	p.R1292L	ENST00000376406	NM_014641.2	1292	cGg/cTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29654857	29654857	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	41	292	0	ENST00000358273.4:c.5609G>T	p.Arg1870Leu	p.R1870L	ENST00000358273	NM_001042492.2	1870	cGg/cTg																																																																														
CBL	867	MSKCC	GRCh37	11	119148948	119148948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	74	523	0	ENST00000264033.4:c.1168G>T	p.Asp390Tyr	p.D390Y	ENST00000264033	NM_005188.3	390	Gat/Tat																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250912	10250912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	152	793	0	ENST00000340748.4:c.3568G>C	p.Asp1190His	p.D1190H	ENST00000340748		1190	Gac/Cac																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175796	24175796	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	131	706	0	ENST00000263121.7:c.1024A>G	p.Asn342Asp	p.N342D	ENST00000263121	NM_003073.3	342	Aac/Gac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47058603	47058603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	103	654	0	ENST00000409792.3:c.7675G>C	p.Glu2559Gln	p.E2559Q	ENST00000409792	NM_014159.6	2559	Gag/Cag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670907	30670907	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	136	917	0	ENST00000376406.3:c.5839A>T	p.Ile1947Phe	p.I1947F	ENST00000376406	NM_014641.2	1947	Att/Ttt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670910	30670911	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	136	909	0	ENST00000376406.3:c.5835_5836insA	p.Pro1946ThrfsTer22	p.P1946Tfs*22	ENST00000376406	NM_014641.2	1945	-/A																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564767	139564767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	273	930	2	ENST00000308874.7:c.556G>A	p.Ala186Thr	p.A186T	ENST00000308874		186	Gcc/Acc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0041102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	110	639	2	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604796	48604798	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0041102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	46	449	0	ENST00000342988.3:c.1619_1621delTTC	p.Leu540del	p.L540del	ENST00000342988	NM_005359.5	540	CTT/-																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307172	65307172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	42	573	0	ENST00000342505.4:c.2516G>A	p.Arg839Gln	p.R839Q	ENST00000342505	NM_002227.2	839	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692779	89692780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0041102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	24	532	0	ENST00000371953.3:c.264dup	p.Pro89SerfsTer3	p.P89Sfs*3	ENST00000371953	NM_000314.4	88	tat/taTt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475046	40475046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	143	754	0	ENST00000264657.5:c.1864A>G	p.Thr622Ala	p.T622A	ENST00000264657	NM_139276.2	622	Act/Gct																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871068	12871068	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	125	425	0	ENST00000228872.4:c.295T>A	p.Cys99Ser	p.C99S	ENST00000228872	NM_004064.3	99	Tgc/Agc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701142	43701142	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0041103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	127	669	0	ENST00000382044.4:c.5553T>A	p.Tyr1851Ter	p.Y1851*	ENST00000382044	NM_001141980.1	1851	taT/taA																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732399	74732399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	157	542	0	ENST00000359995.5:c.510G>T	p.Lys170Asn	p.K170N	ENST00000359995	NM_001195427.1	170	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	277	941	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
RB1	5925	MSKCC	GRCh37	13	49039161	49039161	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0041107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	137	333	0	ENST00000267163.4:c.2239G>T	p.Glu747Ter	p.E747*	ENST00000267163	NM_000321.2	747	Gag/Tag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	148	285	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972418	32972418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	340	753	0	ENST00000380152.3:c.9768G>C	p.Glu3256Asp	p.E3256D	ENST00000380152		3256	gaG/gaC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0041107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	27	511	1				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	48916748	48916758	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAGAAAAAG	AAAAGAAAAAG	-			P-0041107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	165	453	0	ENST00000267163.4:c.278_288del	p.Gln93ArgfsTer13	p.Q93Rfs*13	ENST00000267163	NM_000321.2	93	cAAAAGAAAAAG/c																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098999	178098999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0041107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	103	297	0	ENST00000397062.3:c.46G>C	p.Asp16His	p.D16H	ENST00000397062	NM_006164.4	16	Gac/Cac																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289223	33289223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0041107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	197	703	0	ENST00000374542.5:c.329C>G	p.Ser110Cys	p.S110C	ENST00000374542	NM_001141970.1	110	tCt/tGt																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137527432	137527432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	28	343	0	ENST00000367739.4:c.214G>A	p.Glu72Lys	p.E72K	ENST00000367739	NM_000416.2	72	Gaa/Aaa																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38135837	38135837	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	138	591	0	ENST00000317025.8:c.3854G>C	p.Gly1285Ala	p.G1285A	ENST00000317025	NM_023034.1	1285	gGa/gCa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038759	47038759	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0041107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	128	535	0	ENST00000329236.7:c.535C>T	p.Gln179Ter	p.Q179*	ENST00000329236	NM_001204466.1	179	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	141	639	1	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208046	5208046	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142977438		P-0041108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	98	779	0	ENST00000357368.4:c.5665G>A	p.Val1889Ile	p.V1889I	ENST00000357368	NM_002850.3	1889	Gtc/Atc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728500	190728500	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0041108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	82	501	0	ENST00000441310.2:c.1888C>G	p.Arg630Gly	p.R630G	ENST00000441310	NM_000534.4	630	Cga/Gga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0040946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	52	760	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	49	870	0	ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112569	115112569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	66	1089	3	ENST00000257566.3:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000257566	NM_016569.3	391	Gac/Aac																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651994	36651995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	66	1071	0	ENST00000244741.5:c.119dup	p.Cys41LeufsTer7	p.C41Lfs*7	ENST00000244741	NM_000389.4	39	gcg/gcGg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11169760	11169760	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	37	729	0	ENST00000361445.4:c.7393G>C	p.Glu2465Gln	p.E2465Q	ENST00000361445	NM_004958.3	2465	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49430981	49430985	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCA	TGGCA	-			P-0040946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	70	701	0	ENST00000301067.7:c.10154_10158del	p.Met3385ThrfsTer36	p.M3385Tfs*36	ENST00000301067	NM_003482.3	3385	aTGCCA/a																																																																														
CUL3	8452	MSKCC	GRCh37	2	225367711	225367711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	50	537	0	ENST00000264414.4:c.1456G>A	p.Glu486Lys	p.E486K	ENST00000264414	NM_003590.4	486	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385179	41385179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	51	944	0	ENST00000373198.4:c.782G>A	p.Ser261Asn	p.S261N	ENST00000373198	NM_133170.3	261	aGc/aAc																																																																														
ATR	545	MSKCC	GRCh37	3	142241645	142241645	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	37	554	0	ENST00000350721.4:c.4191G>C	p.Leu1397Phe	p.L1397F	ENST00000350721	NM_001184.3	1397	ttG/ttC																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535348	187535348	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	37	594	0	ENST00000441802.2:c.9226A>T	p.Thr3076Ser	p.T3076S	ENST00000441802	NM_005245.3	3076	Aca/Tca																																																																														
TSC1	7248	MSKCC	GRCh37	9	135782186	135782187	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	28	606	0	ENST00000298552.3:c.1369dup	p.Ser457LysfsTer2	p.S457Kfs*2	ENST00000298552	NM_001162426.1	457	agt/aAgt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938522	44938522	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	44	338	0	ENST00000377967.4:c.3070G>T	p.Glu1024Ter	p.E1024*	ENST00000377967	NM_021140.2	1024	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295192	1295192	+	upstream_gene_variant	5'Flank	INS	C	C	AACGGAAAGGAAGGGGAGGGGCT			P-0040946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	15	337	0				ENST00000310581	NM_198253.2																																																																																
EP300	2033	MSKCC	GRCh37	22	41572267	41572267	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	118	714	0	ENST00000263253.7:c.4796del	p.Arg1599ProfsTer25	p.R1599Pfs*25	ENST00000263253	NM_001429.3	1599	cGc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	228	751	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856060	45856060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	132	720	3	ENST00000391945.4:c.1846C>T	p.Arg616Trp	p.R616W	ENST00000391945	NM_000400.3	616	Cgg/Tgg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004896-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	245	438	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779704	3779704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004896-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			681	296	609	0	ENST00000262367.5:c.5344G>A	p.Ala1782Thr	p.A1782T	ENST00000262367	NM_004380.2	1782	Gcg/Acg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898812	134898812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004896-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	20	259	0	ENST00000398015.3:c.1870G>A	p.Val624Ile	p.V624I	ENST00000398015	NM_004441.4	624	Gtc/Atc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224550	123224550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004896-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	229	467	0	ENST00000218089.9:c.3403G>T	p.Glu1135Ter	p.E1135*	ENST00000218089	NM_001042749.1	1135	Gag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			590	158	611	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	71	874	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	161	84	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	193	89	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	57	101	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	80	64	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152415537	152415537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	227	97	0	ENST00000206249.3:c.1387T>C	p.Ser463Pro	p.S463P	ENST00000206249	NM_000125.3	463	Tcc/Ccc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	123	105	0	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	222	151	1	ENST00000434045.2:c.686delC	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	151	117	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	85	66	0	ENST00000268489.5:c.2287dupG	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	201	156	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339110	65339111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	160	115	0	ENST00000342505.4:c.425dupA	p.Ile143AspfsTer9	p.I143Dfs*9	ENST00000342505	NM_002227.2	142	aag/aaAg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53231107	53231107	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	86	124	0	ENST00000375401.3:c.1795del	p.Arg599ValfsTer60	p.R599Vfs*60	ENST00000375401	NM_004187.3	599	Cgt/gt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943379	71943379	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	255	116	0	ENST00000298229.2:c.1711C>T	p.Arg571Trp	p.R571W	ENST00000298229	NM_001567.3	571	Cgg/Tgg																																																																														
RAC2	5880	MSKCC	GRCh37	22	37622730	37622730	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758461304		P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	214	109	0	ENST00000249071.6:c.562G>A	p.Ala188Thr	p.A188T	ENST00000249071	NM_002872.4	188	Gcc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426973	49426973	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	157	128	0	ENST00000301067.7:c.11515del	p.Gln3839SerfsTer42	p.Q3839Sfs*42	ENST00000301067	NM_003482.3	3839	Cag/ag																																																																														
DDR2	4921	MSKCC	GRCh37	1	162750028	162750028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	117	59	0	ENST00000367921.3:c.2560G>A	p.Asp854Asn	p.D854N	ENST00000367921	NM_006182.2	854	Gac/Aac																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156734	20156734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	192	64	0	ENST00000379607.5:c.23G>A	p.Gly8Glu	p.G8E	ENST00000379607	NM_001412.3	8	gGa/gAa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129438	64129438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	231	134	0	ENST00000334205.4:c.874del	p.Ala292HisfsTer83	p.A292Hfs*83	ENST00000334205	NM_003942.2	290	caG/ca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295278	1295278	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	193	67	1				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023542	27023542	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	33	70	0	ENST00000324856.7:c.651del	p.Asn218ThrfsTer14	p.N218Tfs*14	ENST00000324856	NM_006015.4	216	taC/ta																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448552	89448552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	275	123	0	ENST00000336596.2:c.1516G>A	p.Val506Ile	p.V506I	ENST00000336596	NM_005233.5	506	Gta/Ata																																																																														
CDC42	998	MSKCC	GRCh37	1	22413164	22413164	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	90	50	0	ENST00000344548.3:c.291G>A	p.Trp97Ter	p.W97*	ENST00000344548	NM_001039802.1	97	tgG/tgA																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246027124	246027125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	159	137	0	ENST00000388985.4:c.877dup	p.Ile293AsnfsTer2	p.I293Nfs*2	ENST00000388985		293	att/aAtt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653814	89653814	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	252	84	0	ENST00000371953.3:c.113del	p.Pro38LeufsTer16	p.P38Lfs*16	ENST00000371953	NM_000314.4	38	Cct/ct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118354904	118354904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	126	67	0	ENST00000534358.1:c.4093C>A	p.Pro1365Thr	p.P1365T	ENST00000534358	NM_005933.3	1365	Cca/Aca																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480009	50480010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	213	113	0	ENST00000394963.4:c.249dup	p.Asn84GlufsTer47	p.N84Efs*47	ENST00000394963	NM_003076.4	81	-/G																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650714	67650714	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	346	103	0	ENST00000264010.4:c.1019A>T	p.His340Leu	p.H340L	ENST00000264010	NM_006565.3	340	cAt/cTt																																																																														
BARD1	580	MSKCC	GRCh37	2	215645379	215645379	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	69	123	0	ENST00000260947.4:c.1219G>C	p.Val407Leu	p.V407L	ENST00000260947	NM_000465.2	407	Gtg/Ctg																																																																														
INHA	3623	MSKCC	GRCh37	2	220439722	220439722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	206	139	0	ENST00000243786.2:c.575C>A	p.Pro192His	p.P192H	ENST00000243786	NM_002191.3	192	cCc/cAc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368471	225368471	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	78	75	0	ENST00000264414.4:c.1275del	p.Asp426MetfsTer29	p.D426Mfs*29	ENST00000264414	NM_003590.4	425	aaA/aa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30954230	30954230	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	59	80	0	ENST00000375687.4:c.101T>A	p.Ile34Asn	p.I34N	ENST00000375687	NM_015338.5	34	aTt/aAt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691871	30691871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	49	72	0	ENST00000359013.4:c.448G>A	p.Glu150Lys	p.E150K	ENST00000359013	NM_001024847.2	150	Gaa/Aaa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1919891	1919892	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	93	104	0	ENST00000382891.5:c.953dup	p.Leu318PhefsTer64	p.L318Ffs*64	ENST00000382891	NM_133335.3	317	-/T																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152102	55152102	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	247	133	0	ENST00000257290.5:c.2534A>G	p.His845Arg	p.H845R	ENST00000257290	NM_006206.4	845	cAt/cGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249468	153249468	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	182	139	0	ENST00000281708.4:c.1310del	p.Gly437AspfsTer61	p.G437Dfs*61	ENST00000281708	NM_033632.3	437	gGa/ga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589549	67589572	+	inframe_deletion	In_Frame_Del	DEL	AAAGAAGATAATATTGAAGCTGTA	AAAGAAGATAATATTGAAGCTGTA	-			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	56	62	0	ENST00000274335.5:c.1312_1335del	p.Lys438_Val445del	p.K438_V445del	ENST00000274335		438	AAAGAAGATAATATTGAAGCTGTA/-																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509711	106509711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	160	134	0	ENST00000359195.3:c.1705G>A	p.Ala569Thr	p.A569T	ENST00000359195	NM_002649.2	569	Gca/Aca																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412766	63412766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	51	125	0	ENST00000330258.3:c.401A>G	p.His134Arg	p.H134R	ENST00000330258	NM_152424.3	134	cAt/cGt																																																																														
BTK	695	MSKCC	GRCh37	X	100608282	100608282	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	73	144	0	ENST00000308731.7:c.1808A>C	p.Asn603Thr	p.N603T	ENST00000308731	NM_000061.2	603	aAc/aCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	144	740	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	134	681	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0040938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	121	425	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	95	426	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653800	89653800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	107	462	0	ENST00000371953.3:c.98T>C	p.Ile33Thr	p.I33T	ENST00000371953	NM_000314.4	33	aTt/aCt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720669	89720669	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	60	290	0	ENST00000371953.3:c.820T>G	p.Trp274Gly	p.W274G	ENST00000371953	NM_000314.4	274	Tgg/Ggg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111002	193111002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	71	264	0	ENST00000367435.3:c.535G>A	p.Val179Met	p.V179M	ENST00000367435	NM_024529.4	179	Gtg/Atg																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480123	50480123	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	59	639	0	ENST00000394963.4:c.359del	p.Asn120ThrfsTer43	p.N120Tfs*43	ENST00000394963	NM_003076.4	119	cgA/cg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47708005	47708006	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0040938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	58	441	0	ENST00000233146.2:c.2633_2634del	p.Glu878AlafsTer3	p.E878Afs*3	ENST00000233146	NM_000251.2	877	AGa/a																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151615	55151615	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	125	750	0	ENST00000257290.5:c.2401C>G	p.Gln801Glu	p.Q801E	ENST00000257290	NM_006206.4	801	Caa/Gaa																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64289229	64289229	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	133	546	0	ENST00000370651.3:c.397A>G	p.Ile133Val	p.I133V	ENST00000370651	NM_003463.4	133	Ata/Gta																																																																														
KIT	3815	MSKCC	GRCh37	4	55575609	55575613	+	frameshift_variant	Frame_Shift_Del	DEL	CTAAC	CTAAC	A			P-0040938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	79	496	0	ENST00000288135.5:c.1135_1139delinsA	p.Leu379ArgfsTer3	p.L379Rfs*3	ENST00000288135	NM_000222.2	379	CTAACg/Ag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	198	712	1	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	59	353	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46733165	46733165	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	170	451	0	ENST00000371975.4:c.926A>T	p.Tyr309Phe	p.Y309F	ENST00000371975	NM_003579.3	309	tAc/tTc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40477043	40477043	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	142	446	0	ENST00000264657.5:c.1402T>G	p.Cys468Gly	p.C468G	ENST00000264657	NM_139276.2	468	Tgt/Ggt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374890	45374890	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	41	474	0	ENST00000262160.6:c.953A>G	p.Asn318Ser	p.N318S	ENST00000262160	NM_005901.5	318	aAt/aGt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220375	1220413	+	inframe_deletion	In_Frame_Del	DEL	CTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAG	CTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAG	-			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	128	581	0	ENST00000326873.7:c.469_507del	p.Phe157_Ser169del	p.F157_S169del	ENST00000326873	NM_000455.4	156	taCTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGc/tac																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876508	35876508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	92	476	0	ENST00000303115.3:c.1300G>T	p.Gly434Cys	p.G434C	ENST00000303115	NM_002185.3	434	Ggt/Tgt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522604	106522604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0041007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	58	349	0	ENST00000359195.3:c.2581G>T	p.Asp861Tyr	p.D861Y	ENST00000359195	NM_002649.2	861	Gat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112154827	112154828	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	78	509	0	ENST00000257430.4:c.1100_1101del	p.Ser367CysfsTer10	p.S367Cfs*10	ENST00000257430	NM_000038.5	366	gaCTct/gact																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	70	634	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221947	1221947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	109	907	0	ENST00000326873.7:c.863-1G>T		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711973	89711975	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	42	313	0	ENST00000371953.3:c.595_597del	p.Met199del	p.M199del	ENST00000371953	NM_000314.4	197	aaGATg/aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81939091	81939091	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	80	606	0	ENST00000359376.3:c.1446C>G	p.Tyr482Ter	p.Y482*	ENST00000359376	NM_002661.3	482	taC/taG																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602676	10602690	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTAGTCCTTGCAG	AGGTAGTCCTTGCAG	TA			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	109	870	3	ENST00000171111.5:c.888_902delinsTA	p.Cys297ArgfsTer16	p.C297Rfs*16	ENST00000171111	NM_203500.1	296	cgCTGCAAGGACTACCTg/cgTAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76778800	76778800	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0041014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	56	247	0	ENST00000373344.5:c.6779A>T	p.His2260Leu	p.H2260L	ENST00000373344	NM_000489.3	2260	cAc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	40	726	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12641718	12641718	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs5746220		P-0041032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	41	445	0	ENST00000251849.4:c.923C>T	p.Pro308Leu	p.P308L	ENST00000251849	NM_002880.3	308	cCg/cTg																																																																														
MGA	23269	MSKCC	GRCh37	15	41988440	41988440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0041032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	34	542	0	ENST00000219905.7:c.1232C>T	p.Thr411Met	p.T411M	ENST00000219905	NM_001164273.1	411	aCg/aTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68842659	68842672	+	frameshift_variant	Frame_Shift_Del	DEL	ACACCCCCTGTTGG	ACACCCCCTGTTGG	-			P-0041032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	42	660	0	ENST00000261769.5:c.595_608del	p.Thr199CysfsTer5	p.T199Cfs*5	ENST00000261769	NM_004360.3	199	ACACCCCCTGTTGGt/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0041033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	26	332	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0041033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	55	683	3	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602572	10602572	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0041040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	62	734	1	ENST00000171111.5:c.1006C>T	p.Arg336Ter	p.R336*	ENST00000171111	NM_203500.1	336	Cga/Tga																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281339	49281339	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	770	890	0	ENST00000282018.3:c.386T>A	p.Leu129Gln	p.L129Q	ENST00000282018	NM_020377.2	129	cTg/cAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779812	3779812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	654	839	0	ENST00000262367.5:c.5236G>A	p.Gly1746Arg	p.G1746R	ENST00000262367	NM_004380.2	1746	Ggg/Agg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443485	52443585	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGTCTTCCCTAAGGGGCCCTGTTCTCTGGGACCTTCCCCAGCACTCTGGGTGTAAGGGGCAGCCCTGGTGTACAGCCACTCACCCCTGACATTTGCTCT	ACTGTCTTCCCTAAGGGGCCCTGTTCTCTGGGACCTTCCCCAGCACTCTGGGTGTAAGGGGCAGCCCTGGTGTACAGCCACTCACCCCTGACATTTGCTCT	-			P-0040573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	323	237	0	ENST00000460680.1:c.107_122+85del		p.X36_splice	ENST00000460680	NM_004656.3	36																																																																															
IRF4	3662	MSKCC	GRCh37	6	398902	398938	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCATAAGGTCTGCCGAAGCCTTGGCGTTCTCAGGTG	AGCATAAGGTCTGCCGAAGCCTTGGCGTTCTCAGGTG	-			P-0040573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	247	552	0	ENST00000380956.4:c.714_745+5del		p.X238_splice	ENST00000380956	NM_001195286.1	238																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0040643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	153	647	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127733	64127733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	59	634	1	ENST00000334205.4:c.226G>A	p.Ala76Thr	p.A76T	ENST00000334205	NM_003942.2	76	Gcc/Acc																																																																														
TET1	80312	MSKCC	GRCh37	10	70405992	70405992	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	58	604	1	ENST00000373644.4:c.3506A>C	p.Gln1169Pro	p.Q1169P	ENST00000373644	NM_030625.2	1169	cAa/cCa																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627592	14627592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	98	483	0	ENST00000254322.2:c.478C>A	p.Gln160Lys	p.Q160K	ENST00000254322	NM_006145.1	160	Caa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023380	27023390	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGCCGCGG	CGCCGCCGCGG	-			P-0040842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	51	472	0	ENST00000324856.7:c.487_497del	p.Ala163ArgfsTer233	p.A163Rfs*233	ENST00000324856	NM_006015.4	162	gcCGCCGCCGCGGcc/gccc																																																																														
ATM	472	MSKCC	GRCh37	11	108153552	108153552	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	52	385	0	ENST00000278616.4:c.3692T>A	p.Leu1231Ter	p.L1231*	ENST00000278616	NM_000051.3	1231	tTa/tAa																																																																														
ATM	472	MSKCC	GRCh37	11	108225540	108225540	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	51	407	0	ENST00000278616.4:c.8789G>T	p.Cys2930Phe	p.C2930F	ENST00000278616	NM_000051.3	2930	tGc/tTc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43699761	43699776	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCAATATCTGCAAGG	AGCAATATCTGCAAGG	-			P-0040842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	56	525	0	ENST00000382044.4:c.5747-8_5754del		p.X1916_splice	ENST00000382044	NM_001141980.1	1916																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0040844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	735	871	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0040844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	116	394	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	180	390	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552927	106552927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	32	792	1	ENST00000369096.4:c.892G>A	p.Val298Ile	p.V298I	ENST00000369096	NM_001198.3	298	Gtt/Att																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400830	72400830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	17	246	0	ENST00000357731.5:c.341G>A	p.Gly114Asp	p.G114D	ENST00000357731	NM_173808.2	114	gGc/gAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165007	47165010	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-	rs752743762		P-0040852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	22	267	0	ENST00000409792.3:c.1116_1119del	p.Asp372GlufsTer111	p.D372Efs*111	ENST00000409792	NM_014159.6	372	gaCAGA/ga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439780	52439780	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0040852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	26	470	1	ENST00000460680.1:c.931+1G>C		p.X311_splice	ENST00000460680	NM_004656.3	311																																																																															
TET2	54790	MSKCC	GRCh37	4	106180783	106180783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	15	238	0	ENST00000380013.4:c.3811T>C	p.Cys1271Arg	p.C1271R	ENST00000380013	NM_001127208.2	1271	Tgc/Cgc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68934347	68934347	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	24	554	0	ENST00000288368.4:c.413A>T	p.Lys138Ile	p.K138I	ENST00000288368	NM_024870.2	138	aAa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	678	591	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
TET1	80312	MSKCC	GRCh37	10	70404534	70404534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	54	438	0	ENST00000373644.4:c.2048A>G	p.Gln683Arg	p.Q683R	ENST00000373644	NM_030625.2	683	cAa/cGa																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056170	26056170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	43	488	0	ENST00000343677.2:c.487G>T	p.Ala163Ser	p.A163S	ENST00000343677	NM_005319.3	163	Gcg/Tcg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412682	139412682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	201	851	0	ENST00000277541.6:c.1162G>A	p.Asp388Asn	p.D388N	ENST00000277541	NM_017617.3	388	Gac/Aac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276788	15276788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1224	304	245	0	ENST00000263388.2:c.5477G>T	p.Cys1826Phe	p.C1826F	ENST00000263388	NM_000435.2	1826	tGc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			594	352	204	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730916	40730916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			869	70	190	1	ENST00000373198.4:c.3619C>T	p.Arg1207Cys	p.R1207C	ENST00000373198	NM_133170.3	1207	Cgt/Tgt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472652	88472652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	55	136	0	ENST00000360948.2:c.1903G>C	p.Asp635His	p.D635H	ENST00000360948	NM_001012338.2	635	Gat/Cat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38967476	38967476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	65	144	0	ENST00000357387.3:c.1114G>A	p.Glu372Lys	p.E372K	ENST00000357387	NM_152756.3	372	Gag/Aag																																																																														
CARM1	10498	MSKCC	GRCh37	19	11030338	11030340	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			977	128	177	0	ENST00000327064.4:c.1091_1093del	p.Glu364del	p.E364del	ENST00000327064	NM_199141.1	363	aAAGaa/aaa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910405	29910405	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1473	95	292	0	ENST00000376809.5:c.73+2T>G		p.X25_splice	ENST00000376809	NM_002116.7	25																																																																															
BRD4	23476	MSKCC	GRCh37	19	15367780	15367780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1244	113	256	0	ENST00000263377.2:c.1546G>C	p.Glu516Gln	p.E516Q	ENST00000263377	NM_058243.2	516	Gag/Cag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660663	227660663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	228	237	0	ENST00000305123.5:c.2792C>A	p.Pro931His	p.P931H	ENST00000305123	NM_005544.2	931	cCc/cAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445005	89445005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	53	140	0	ENST00000336596.2:c.1325C>A	p.Thr442Lys	p.T442K	ENST00000336596	NM_005233.5	442	aCg/aAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950753	38950753	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	29	91	0	ENST00000357387.3:c.3197A>T	p.Glu1066Val	p.E1066V	ENST00000357387	NM_152756.3	1066	gAa/gTa																																																																														
PIM1	5292	MSKCC	GRCh37	6	37138654	37138654	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			946	108	207	0	ENST00000373509.5:c.188C>A	p.Pro63Gln	p.P63Q	ENST00000373509	NM_002648.3	63	cCg/cAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877926	151877926	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	140	102	0	ENST00000262189.6:c.7019C>G	p.Ser2340Cys	p.S2340C	ENST00000262189	NM_170606.2	2340	tCt/tGt																																																																														
AR	367	MSKCC	GRCh37	X	66765686	66765686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021969-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			713	158	143	0	ENST00000374690.3:c.698C>G	p.Ser233Cys	p.S233C	ENST00000374690	NM_000044.3	233	tCt/tGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0025989-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			748	100	558	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578237	7578237	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025989-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	564	843	1	ENST00000269305.4:c.612G>C	p.Glu204Asp	p.E204D	ENST00000269305	NM_001126112.2	204	gaG/gaC																																																																														
KIT	3815	MSKCC	GRCh37	4	55593594	55593647	+	inframe_deletion	In_Frame_Del	DEL	GAAGTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATA	GAAGTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATA	-			P-0025989-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	276	495	0	ENST00000288135.5:c.1662_1715del	p.Glu554_Ile571del	p.E554_I571del	ENST00000288135	NM_000222.2	554	GAAGTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATA/-																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711879	89711879	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	61	483	0	ENST00000371953.3:c.497T>G	p.Val166Gly	p.V166G	ENST00000371953	NM_000314.4	166	gTa/gGa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829029	72829029	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	82	853	0	ENST00000268489.5:c.7552C>T	p.Gln2518Ter	p.Q2518*	ENST00000268489	NM_006885.3	2518	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578438	7578440	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0040754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	389	938	0	ENST00000269305.4:c.490_492del	p.Lys164del	p.K164del	ENST00000269305	NM_001126112.2	164	AAG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	191	742	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	94	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201798	152201798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	66	337	2	ENST00000206249.3:c.652G>A	p.Asp218Asn	p.D218N	ENST00000206249	NM_000125.3	218	Gac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922980	44922983	+	frameshift_variant	Frame_Shift_Del	DEL	CACT	CACT	-			P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	190	306	0	ENST00000377967.4:c.1846_1849del	p.Thr616TyrfsTer8	p.T616Yfs*8	ENST00000377967	NM_021140.2	614	gCACTc/gc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141552	11141552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	195	787	0	ENST00000344626.4:c.3529G>T	p.Asp1177Tyr	p.D1177Y	ENST00000344626	NM_003072.3	1177	Gac/Tac																																																																														
CASP8	841	MSKCC	GRCh37	2	202141611	202141611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	87	450	0	ENST00000358485.4:c.899A>G	p.Asn300Ser	p.N300S	ENST00000358485	NM_001080125.1	300	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938790	178938790	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	52	467	0	ENST00000263967.3:c.2032A>G	p.Lys678Glu	p.K678E	ENST00000263967	NM_006218.2	678	Aaa/Gaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938812	178938812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	37	318	0	ENST00000263967.3:c.2054G>T	p.Gly685Val	p.G685V	ENST00000263967	NM_006218.2	685	gGc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	224	639	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	134	422	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	234	558	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	323	356	2	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123171462	123171462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	109	211	0	ENST00000218089.9:c.374C>T	p.Ser125Leu	p.S125L	ENST00000218089	NM_001042749.1	125	tCa/tTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41553266	41553266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	107	583	0	ENST00000263253.7:c.3355G>A	p.Asp1119Asn	p.D1119N	ENST00000263253	NM_001429.3	1119	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724314	117724314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	111	567	0	ENST00000368508.3:c.565C>T	p.His189Tyr	p.H189Y	ENST00000368508	NM_002944.2	189	Cat/Tat																																																																														
IRF4	3662	MSKCC	GRCh37	6	401492	401492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	173	441	0	ENST00000380956.4:c.814G>A	p.Glu272Lys	p.E272K	ENST00000380956	NM_001195286.1	272	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	198	408	2				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49418643	49418643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	240	538	1	ENST00000301067.7:c.15871G>A	p.Glu5291Lys	p.E5291K	ENST00000301067	NM_003482.3	5291	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938406	44938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	190	212	0	ENST00000377967.4:c.2954C>T	p.Ser985Phe	p.S985F	ENST00000377967	NM_021140.2	985	tCt/tTt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554367	141554367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	989	856	0	ENST00000220592.5:c.1784G>A	p.Gly595Glu	p.G595E	ENST00000220592	NM_012154.3	595	gGa/gAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087533	27087534	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	333	756	0	ENST00000324856.7:c.2108_2109del	p.Pro703ArgfsTer113	p.P703Rfs*113	ENST00000324856	NM_006015.4	703	CCc/c																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176012342	176012342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	218	436	0	ENST00000367669.3:c.1592C>T	p.Ser531Leu	p.S531L	ENST00000367669	NM_022457.5	531	tCa/tTa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258095	123258095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	202	473	0	ENST00000358487.5:c.1586C>G	p.Ser529Cys	p.S529C	ENST00000358487	NM_000141.4	529	tCt/tGt																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589630	69589630	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	66	201	0	ENST00000168712.1:c.223G>T	p.Asp75Tyr	p.D75Y	ENST00000168712	NM_002007.2	75	Gac/Tac																																																																														
YAP1	10413	MSKCC	GRCh37	11	102076696	102076696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	233	568	0	ENST00000282441.5:c.875G>A	p.Gly292Glu	p.G292E	ENST00000282441	NM_001130145.2	292	gGa/gAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351569	89351569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	330	810	0	ENST00000301030.4:c.1381G>C	p.Glu461Gln	p.E461Q	ENST00000301030	NM_001256183.1	461	Gaa/Caa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158626928	158626928	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	245	571	0	ENST00000263640.3:c.742G>C	p.Glu248Gln	p.E248Q	ENST00000263640	NM_001105.4	248	Gaa/Caa																																																																														
EP300	2033	MSKCC	GRCh37	22	41548252	41548252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	43	373	0	ENST00000263253.7:c.3040G>A	p.Glu1014Lys	p.E1014K	ENST00000263253	NM_001429.3	1014	Gag/Aag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52696154	52696154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	276	553	0	ENST00000394830.3:c.523G>A	p.Glu175Lys	p.E175K	ENST00000394830	NM_018313.4	175	Gaa/Aaa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1920280	1920280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	147	722	0	ENST00000382891.5:c.1340C>A	p.Ser447Tyr	p.S447Y	ENST00000382891	NM_133335.3	447	tCc/tAc																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384672	84384672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	229	457	0	ENST00000321945.7:c.771G>C	p.Arg257Ser	p.R257S	ENST00000321945	NM_139076.2	257	agG/agC																																																																														
MSH3	4437	MSKCC	GRCh37	5	79950602	79950602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	76	495	0	ENST00000265081.6:c.56C>A	p.Ala19Glu	p.A19E	ENST00000265081	NM_002439.4	19	gCg/gAg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554797	106554797	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	62	317	0	ENST00000369096.4:c.1914G>C	p.Lys638Asn	p.K638N	ENST00000369096	NM_001198.3	638	aaG/aaC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223553	55223553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	95	692	1	ENST00000275493.2:c.920G>A	p.Cys307Tyr	p.C307Y	ENST00000275493	NM_005228.3	307	tGc/tAc																																																																														
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	255	229	2	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
CBL	867	MSKCC	GRCh37	11	119148890	119148890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	87	296	0	ENST00000264033.4:c.1110A>C	p.Leu370Phe	p.L370F	ENST00000264033	NM_005188.3	370	ttA/ttC																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176175850	176175850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	215	316	1	ENST00000367669.3:c.265C>T	p.His89Tyr	p.H89Y	ENST00000367669	NM_022457.5	89	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577606	7577606	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0040814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	310	534	0	ENST00000269305.4:c.675delT	p.Gly226AlafsTer21	p.G226Afs*21	ENST00000269305	NM_001126112.2	225	gtT/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	1003	728	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	234	451	1	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430411	78430412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	243	447	0	ENST00000370768.2:c.756dupA	p.Glu253ArgfsTer5	p.E253Rfs*5	ENST00000370768	NM_003902.3	252	-/A																																																																														
APC	324	MSKCC	GRCh37	5	112173723	112173723	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	185	360	0	ENST00000257430.4:c.2432C>G	p.Ser811Ter	p.S811*	ENST00000257430	NM_000038.5	811	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112175256	112175266	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTCCAGCA	AAGTTCCAGCA	-			P-0040832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	121	264	0	ENST00000257430.4:c.3965_3975del	p.Glu1322GlyfsTer6	p.E1322Gfs*6	ENST00000257430	NM_000038.5	1322	gAAGTTCCAGCA/g																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964483	93964483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	52	495	0	ENST00000369303.4:c.2414C>A	p.Pro805His	p.P805H	ENST00000369303	NM_004440.3	805	cCc/cAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0040835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	27	304	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	175	657	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	291	964	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193091448	193091448	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	288	644	0	ENST00000367435.3:c.118T>G	p.Tyr40Asp	p.Y40D	ENST00000367435	NM_024529.4	40	Tat/Gat																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983120	201983121	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0040947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	380	910	1	ENST00000359651.3:c.970_971dup	p.Met324IlefsTer2	p.M324Ifs*2	ENST00000359651		323	-/AT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295788	212295788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	83	697	0	ENST00000342788.4:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000342788	NM_005235.2	842	cGg/cAg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030521-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			64	355	269	0	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga																																																																														
CBFB	865	MSKCC	GRCh37	16	67070543	67070543	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030521-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	163	254	0	ENST00000412916.2:c.167C>A	p.Ala56Asp	p.A56D	ENST00000412916		56	gCt/gAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827572	72827574	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0030521-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	354	740	0	ENST00000268489.5:c.9007_9009del	p.Lys3003del	p.K3003del	ENST00000268489	NM_006885.3	3003	AAG/-																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942754	68942754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030521-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	273	498	0	ENST00000288368.4:c.566G>A	p.Arg189Gln	p.R189Q	ENST00000288368	NM_024870.2	189	cGg/cAg																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94180463	94180463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030521-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	291	495	0	ENST00000323929.3:c.1705G>A	p.Gly569Arg	p.G569R	ENST00000323929	NM_005591.3	569	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112176799	112176799	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030521-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			62	379	353	0	ENST00000257430.4:c.5509del	p.Ser1837ValfsTer26	p.S1837Vfs*26	ENST00000257430	NM_000038.5	1836	ggA/gg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499733	8499733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030521-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	330	568	1	ENST00000356435.5:c.2236G>A	p.Gly746Arg	p.G746R	ENST00000356435		746	Gga/Aga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033219-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	446	846	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578469	+	frameshift_variant	Frame_Shift_Del	DEL	CGGACGCGGGTGC	CGGACGCGGGTGC	-			P-0033219-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	561	1029	0	ENST00000269305.4:c.461_473del	p.Gly154AlafsTer12	p.G154Afs*12	ENST00000269305	NM_001126112.2	154	gGCACCCGCGTCCGc/gc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874012	151874012	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033219-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			671	185	738	0	ENST00000262189.6:c.8526T>G	p.Asn2842Lys	p.N2842K	ENST00000262189	NM_170606.2	2842	aaT/aaG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039523-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	255	398	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039523-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	516	599	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707579	176707579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039523-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			841	46	421	0	ENST00000439151.2:c.5636T>C	p.Ile1879Thr	p.I1879T	ENST00000439151	NM_022455.4	1879	aTt/aCt																																																																														
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	10	358	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1920217	1920217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200784805		P-0040668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	165	651	0	ENST00000382891.5:c.1277C>T	p.Thr426Met	p.T426M	ENST00000382891	NM_133335.3	426	aCg/aTg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248394	59248394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	84	367	0	ENST00000371222.2:c.349G>T	p.Ala117Ser	p.A117S	ENST00000371222	NM_002228.3	117	Gcc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112175643	112175643	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	52	327	0	ENST00000257430.4:c.4353del	p.Val1452TyrfsTer21	p.V1452Yfs*21	ENST00000257430	NM_000038.5	1451	gAa/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426016	49426017	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGTT			P-0040668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	139	803	0	ENST00000301067.7:c.12467_12471dup	p.Pro4158AsnfsTer5	p.P4158Nfs*5	ENST00000301067	NM_003482.3	4157	-/AACAG																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935063	49935063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	108	716	0	ENST00000296474.3:c.1936G>T	p.Gly646Cys	p.G646C	ENST00000296474	NM_002447.2	646	Ggc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	261	480	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	205	564	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
RB1	5925	MSKCC	GRCh37	13	48955538	48955538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	210	411	1	ENST00000267163.4:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000267163	NM_000321.2	552	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984016	2984016	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	266	691	0	ENST00000396946.4:c.514G>T	p.Glu172Ter	p.E172*	ENST00000396946	NM_032415.4	172	Gag/Tag																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733527	85733527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200837308		P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	50	498	1	ENST00000370580.1:c.485C>T	p.Thr162Met	p.T162M	ENST00000370580	NM_003921.4	162	aCg/aTg																																																																														
AKT3	10000	MSKCC	GRCh37	1	244006426	244006426	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	277	581	0	ENST00000263826.5:c.46+1G>T		p.X16_splice	ENST00000263826	NM_005465.4	16																																																																															
BRCA2	675	MSKCC	GRCh37	13	32913492	32913492	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	127	571	0	ENST00000380152.3:c.5000C>G	p.Ser1667Ter	p.S1667*	ENST00000380152		1667	tCa/tGa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246584	41246584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	294	699	0	ENST00000357654.3:c.964G>T	p.Ala322Ser	p.A322S	ENST00000357654	NM_007294.3	322	Gct/Tct																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99152220	99152220	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	81	403	0	ENST00000074304.5:c.299G>C	p.Ser100Thr	p.S100T	ENST00000074304	NM_001134224.1	100	aGt/aCt																																																																														
APC	324	MSKCC	GRCh37	5	112174211	112174212	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	133	490	1	ENST00000257430.4:c.2920_2921delinsTT	p.Gly974Phe	p.G974F	ENST00000257430	NM_000038.5	974	GGt/TTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005873	69005873	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	54	517	0	ENST00000288368.4:c.2284G>T	p.Glu762Ter	p.E762*	ENST00000288368	NM_024870.2	762	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0040699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	46	747	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	37	444	0	ENST00000257430.4:c.4199del	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912654		P-0040699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	71	828	3	ENST00000269305.4:c.469G>A	p.Val157Ile	p.V157I	ENST00000269305	NM_001126112.2	157	Gtc/Atc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	49	619	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	14	414	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	78	293	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717624	89717624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	87	326	0	ENST00000371953.3:c.649G>T	p.Val217Phe	p.V217F	ENST00000371953	NM_000314.4	217	Gtc/Ttc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685309	89685309	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	38	190	0	ENST00000371953.3:c.204C>G	p.Tyr68Ter	p.Y68*	ENST00000371953	NM_000314.4	68	taC/taG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101006	27101006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	190	599	0	ENST00000324856.7:c.4288C>T	p.Gln1430Ter	p.Q1430*	ENST00000324856	NM_006015.4	1430	Cag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118936	70118936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	362	754	0	ENST00000245479.2:c.508C>A	p.Pro170Thr	p.P170T	ENST00000245479	NM_000346.3	170	Ccg/Acg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40485713	40485713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	193	499	0	ENST00000264657.5:c.1027G>T	p.Val343Phe	p.V343F	ENST00000264657	NM_139276.2	343	Gtc/Ttc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591110	67591136	+	inframe_deletion	In_Frame_Del	DEL	CAGACCTTATCCAGCTGAGAAAGACGA	CAGACCTTATCCAGCTGAGAAAGACGA	-			P-0040767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	25	272	0	ENST00000274335.5:c.1703_1729delCAGACCTTATCCAGCTGAGAAAGACGA	p.Pro568_Thr576del	p.P568_T576del	ENST00000274335		568	cCAGACCTTATCCAGCTGAGAAAGACGAga/cga																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128432171	128432171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	45	321	0	ENST00000265960.3:c.275G>A	p.Arg92Gln	p.R92Q	ENST00000265960	NM_001006617.1	92	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	52	233	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	319	638	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	228	424	1	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154812	2154812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	192	897	0	ENST00000434045.2:c.409G>C	p.Glu137Gln	p.E137Q	ENST00000434045	NM_001127598.1	137	Gag/Cag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435436	18435436	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	25	286	0	ENST00000266497.5:c.421T>A	p.Phe141Ile	p.F141I	ENST00000266497		141	Ttc/Atc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719424	190719424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	37	218	0	ENST00000441310.2:c.1426G>C	p.Asp476His	p.D476H	ENST00000441310	NM_000534.4	476	Gat/Cat																																																																														
APC	324	MSKCC	GRCh37	5	112173452	112173452	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	27	256	0	ENST00000257430.4:c.2161G>T	p.Gly721Ter	p.G721*	ENST00000257430	NM_000038.5	721	Gga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	438	409	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273306	55273306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35918369		P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	427	538	0	ENST00000275493.2:c.3629C>T	p.Ala1210Val	p.A1210V	ENST00000275493	NM_005228.3	1210	gCa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	935	1045	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
RET	5979	MSKCC	GRCh37	10	43612068	43612068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	336	900	0	ENST00000355710.3:c.2173G>T	p.Val725Phe	p.V725F	ENST00000355710	NM_020975.4	725	Gtt/Ttt																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156689	2156689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	307	934	0	ENST00000434045.2:c.233G>A	p.Cys78Tyr	p.C78Y	ENST00000434045	NM_001127598.1	78	tGc/tAc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125513723	125513723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	343	478	1	ENST00000428830.2:c.851C>T	p.Ser284Leu	p.S284L	ENST00000428830	NM_001114121.2	284	tCa/tTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488689	212488689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	207	558	0	ENST00000342788.4:c.2160G>T	p.Arg720Ser	p.R720S	ENST00000342788	NM_005235.2	720	agG/agT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	124	92	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	125	131	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017438-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			369	239	442	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0017438-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	188	300	0	ENST00000358273.4:c.6852_6855delTTAC	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017438-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	491	593	0	ENST00000269305.4:c.721T>G	p.Ser241Ala	p.S241A	ENST00000269305	NM_001126112.2	241	Tcc/Gcc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850801	63850801	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026050-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			519	189	503	0	ENST00000279873.7:c.1579G>T	p.Glu527Ter	p.E527*	ENST00000279873	NM_032199.2	527	Gag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914526	32914526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026050-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			380	421	608	0	ENST00000380152.3:c.6034T>C	p.Ser2012Pro	p.S2012P	ENST00000380152		2012	Tcc/Ccc																																																																														
MGA	23269	MSKCC	GRCh37	15	42040903	42040903	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026050-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			171	659	632	2	ENST00000219905.7:c.5281C>T	p.Arg1761Ter	p.R1761*	ENST00000219905	NM_001164273.1	1761	Cga/Tga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781345	3781345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026050-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	656	913	1	ENST00000262367.5:c.5020A>G	p.Lys1674Glu	p.K1674E	ENST00000262367	NM_004380.2	1674	Aag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026050-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			183	991	632	1	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5265138	5265138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026050-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			214	1031	963	1	ENST00000357368.4:c.449G>T	p.Arg150Leu	p.R150L	ENST00000357368	NM_002850.3	150	cGg/cTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391196	89391196	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs144998277		P-0026050-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			470	316	492	0	ENST00000336596.2:c.1262C>A	p.Pro421Gln	p.P421Q	ENST00000336596	NM_005233.5	421	cCa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189607157	189607157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026050-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	304	754	0	ENST00000264731.3:c.1536G>A	p.Met512Ile	p.M512I	ENST00000264731	NM_003722.4	512	atG/atA																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149512360	149512361	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0026050-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			378	410	764	1	ENST00000261799.4:c.1079_1080delinsAA	p.Ser360Ter	p.S360*	ENST00000261799	NM_002609.3	360	tCC/tAA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026050-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			568	11311	691	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878233	151878233	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026050-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			1243	621	634	0	ENST00000262189.6:c.6712A>G	p.Met2238Val	p.M2238V	ENST00000262189	NM_170606.2	2238	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028340-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	99	450	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691922	30691922	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028340-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	261	367	0	ENST00000359013.4:c.499G>T	p.Glu167Ter	p.E167*	ENST00000359013	NM_001024847.2	167	Gag/Tag																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871037	12871037	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	179	405	0	ENST00000228872.4:c.264del	p.Tyr89ThrfsTer30	p.Y89Tfs*30	ENST00000228872	NM_004064.3	88	taC/ta																																																																														
APC	324	MSKCC	GRCh37	5	112164575	112164575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	127	305	0	ENST00000257430.4:c.1649A>G	p.Asn550Ser	p.N550S	ENST00000257430	NM_000038.5	550	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			726	256	784	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	92	395	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106892	27106900	+	inframe_deletion	In_Frame_Del	DEL	TGGTACTGC	TGGTACTGC	-			P-0033419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	199	681	0	ENST00000324856.7:c.6506_6514del	p.Val2169_Leu2171del	p.V2169_L2171del	ENST00000324856	NM_006015.4	2168	gTGGTACTGCtg/gtg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2220706	2220706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	105	607	0	ENST00000326181.6:c.323C>T	p.Ser108Leu	p.S108L	ENST00000326181	NM_032271.2	108	tCa/tTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830178	72830178	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	156	586	0	ENST00000268489.5:c.6403C>G	p.Gln2135Glu	p.Q2135E	ENST00000268489	NM_006885.3	2135	Cag/Gag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468423	89468423	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	128	396	0	ENST00000336596.2:c.1957A>T	p.Lys653Ter	p.K653*	ENST00000336596	NM_005233.5	653	Aag/Tag																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754812	57754813	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0033419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	51	310	0	ENST00000274289.3:c.377_378del	p.Lys126AsnfsTer2	p.K126Nfs*2	ENST00000274289	NM_006622.3	126	aAG/a																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522577	157522577	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			821	350	889	1	ENST00000346085.5:c.4849C>T	p.Gln1617Ter	p.Q1617*	ENST00000346085	NM_020732.3	1617	Caa/Taa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041332	47041351	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTCCCCTCACCCCCTAGCT	GTTCCCCTCACCCCCTAGCT	-			P-0033419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	155	416	0	ENST00000329236.7:c.1460-12_1467del		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0035757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	108	682	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	262	679	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
BLM	641	MSKCC	GRCh37	15	91352424	91352424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	53	430	0	ENST00000355112.3:c.3809A>G	p.Lys1270Arg	p.K1270R	ENST00000355112	NM_000057.2	1270	aAa/aGa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953354	17953354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	156	916	0	ENST00000458235.1:c.632G>A	p.Arg211Lys	p.R211K	ENST00000458235	NM_000215.3	211	aGg/aAg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807098	1807098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1515	144	866	0	ENST00000260795.2:c.1429C>T	p.Pro477Ser	p.P477S	ENST00000260795		477	Ccc/Tcc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86633842	86633842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	20	383	0	ENST00000274376.6:c.951G>T	p.Trp317Cys	p.W317C	ENST00000274376	NM_002890.2	317	tgG/tgT																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942761	68942761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	201	562	0	ENST00000288368.4:c.573C>A	p.His191Gln	p.H191Q	ENST00000288368	NM_024870.2	191	caC/caA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036745-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	10	286	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	96	382	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	74	402	0	ENST00000342988.3:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000342988	NM_005359.5	351	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108114767	108114767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	37	414	0	ENST00000278616.4:c.584C>T	p.Thr195Ile	p.T195I	ENST00000278616	NM_000051.3	195	aCc/aTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864537	57864537	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	210	698	0	ENST00000228682.2:c.2014G>T	p.Gly672Ter	p.G672*	ENST00000228682	NM_005269.2	672	Gga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937424	32937434	+	frameshift_variant	Frame_Shift_Del	DEL	ATTGAGCGCAA	ATTGAGCGCAA	-			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	191	432	0	ENST00000380152.3:c.8087_8097del	p.Leu2696TyrfsTer3	p.L2696Yfs*3	ENST00000380152		2695	tcATTGAGCGCAAat/tcat																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438169	56438169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			712	196	711	0	ENST00000407977.2:c.824G>T	p.Cys275Phe	p.C275F	ENST00000407977		275	tGt/tTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604721	48604721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	31	372	0	ENST00000342988.3:c.1543A>G	p.Arg515Gly	p.R515G	ENST00000342988	NM_005359.5	515	Aga/Gga																																																																														
ETV1	2115	MSKCC	GRCh37	7	13978838	13978838	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	81	412	0	ENST00000405192.2:c.269A>C	p.Lys90Thr	p.K90T	ENST00000405192	NM_001163147.1	90	aAa/aCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878052	151878052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	31	362	0	ENST00000262189.6:c.6893C>A	p.Pro2298His	p.P2298H	ENST00000262189	NM_170606.2	2298	cCc/cAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412605	63412605	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038074-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	57	583	0	ENST00000330258.3:c.562G>T	p.Glu188Ter	p.E188*	ENST00000330258	NM_152424.3	188	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0039994-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			245	448	692	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039994-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			173	472	647	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41551085	41551085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039994-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			473	182	620	1	ENST00000263253.7:c.3229C>T	p.Gln1077Ter	p.Q1077*	ENST00000263253	NM_001429.3	1077	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420927	49420928	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0039994-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			412	230	636	0	ENST00000301067.7:c.14821_14822del	p.Leu4941GlyfsTer2	p.L4941Gfs*2	ENST00000301067	NM_003482.3	4941	TTg/g																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299836	15299836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039994-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			338	369	772	2	ENST00000263388.2:c.1342G>T	p.Asp448Tyr	p.D448Y	ENST00000263388	NM_000435.2	448	Gac/Tac																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62292751	62292751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039994-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			248	247	649	0	ENST00000508582.2:c.203C>T	p.Ser68Phe	p.S68F	ENST00000508582		68	tCt/tTt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31511180	31511180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039994-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			481	658	637	0	ENST00000344624.3:c.1394C>T	p.Pro465Leu	p.P465L	ENST00000344624		465	cCg/cTg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250145	110250145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039994-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			137	236	655	1	ENST00000374672.4:c.530C>T	p.Ser177Phe	p.S177F	ENST00000374672	NM_004235.4	177	tCc/tTc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128015233	128015233	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039994-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			604	72	549	0	ENST00000285398.2:c.2288C>G	p.Ser763Ter	p.S763*	ENST00000285398	NM_000122.1	763	tCa/tGa																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180394	38180394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039994-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			455	24	646	0	ENST00000396334.3:c.242C>G	p.Ala81Gly	p.A81G	ENST00000396334	NM_002468.4	81	gCg/gGg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643728	52643728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039994-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			430	58	575	0	ENST00000394830.3:c.2168C>T	p.Ser723Phe	p.S723F	ENST00000394830	NM_018313.4	723	tCt/tTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662381	117662381	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039994-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			404	188	522	0	ENST00000368508.3:c.4996G>C	p.Val1666Leu	p.V1666L	ENST00000368508	NM_002944.2	1666	Gtt/Ctt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126686	5126686	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0039994-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			285	46	336	0	ENST00000381652.3:c.3294C>G	p.Ile1098Met	p.I1098M	ENST00000381652	NM_004972.3	1098	atC/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0040528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	62	804	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																														
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0040528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	89	860	2	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	120	613	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																														
APC	324	MSKCC	GRCh37	5	112175650	112175651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	35	391	0	ENST00000257430.4:c.4364dup	p.Asn1455LysfsTer2	p.N1455Kfs*2	ENST00000257430	NM_000038.5	1453	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	113	535	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	251	569	0	ENST00000342988.3:c.1523G>A	p.Gly508Asp	p.G508D	ENST00000342988	NM_005359.5	508	gGc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427250	49427251	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0040531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	129	994	0	ENST00000301067.7:c.11235_11237dup	p.Gln3745dup	p.Q3745dup	ENST00000301067	NM_003482.3	3745	cac/caGCAc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47700117	47700117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	132	622	0	ENST00000347630.2:c.56C>G	p.Ala19Gly	p.A19G	ENST00000347630	NM_001007230.1	19	gCt/gGt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212311	36212311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	238	1138	0	ENST00000222270.7:c.2062C>T	p.Pro688Ser	p.P688S	ENST00000222270	NM_014727.1	688	Cca/Tca																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62290777	62290777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	202	428	0	ENST00000508582.2:c.22G>A	p.Gly8Ser	p.G8S	ENST00000508582		8	Ggt/Agt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1503	83	1057	0	ENST00000171111.5:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000171111	NM_203500.1	422	Gat/Aat																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572549	64572549	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	477	868	2	ENST00000337652.1:c.1322G>A	p.Trp441Ter	p.W441*	ENST00000337652	NM_130803.2	441	tGg/tAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76888697	76888697	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	222	283	0	ENST00000373344.5:c.5132C>T	p.Pro1711Leu	p.P1711L	ENST00000373344	NM_000489.3	1711	cCa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	56	435	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	97	810	1	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	75	653	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	75	653	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	75	653	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799345	88799637	+	splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	GCCAGAAACTACACTTGGCTGGGCAAAGAGAGACATCCATCTCCGATCGCTGCTTCTAAAAAAGAGGAGGAGGAGAGGAGAGGGGGGTGGGGTGGGGGGAGTGGGGAGAGCAGGGGGGGAAGGAAACAAAGACGGCGAGGGAGGGGGGAAGGGGGAGGGGGGGCCTCTGCCTTTGAAACGCCGAGCGATCAGATGCAAAATCCTTCAGCGTCTGAAACCATCGCGGACGCCGCCGCCGCCGCCGCCGCCGCCGGGTGGGAGCCGCGAGGAGCGCCTAGTGGCGCGGTCTGCCG	GCCAGAAACTACACTTGGCTGGGCAAAGAGAGACATCCATCTCCGATCGCTGCTTCTAAAAAAGAGGAGGAGGAGAGGAGAGGGGGGTGGGGTGGGGGGAGTGGGGAGAGCAGGGGGGGAAGGAAACAAAGACGGCGAGGGAGGGGGGAAGGGGGAGGGGGGGCCTCTGCCTTTGAAACGCCGAGCGATCAGATGCAAAATCCTTCAGCGTCTGAAACCATCGCGGACGCCGCCGCCGCCGCCGCCGCCGCCGGGTGGGAGCCGCGAGGAGCGCCTAGTGGCGCGGTCTGCCG	-			P-0040536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	31	521	0	ENST00000360948.2:c.-138_40del		p.X46_splice	ENST00000360948	NM_001012338.2	46																																																																															
STK11	6794	MSKCC	GRCh37	19	1207135	1207136	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			P-0040536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	78	841	0	ENST00000326873.7:c.225_226insCGG	p.Arg75dup	p.R75dup	ENST00000326873	NM_000455.4	75	agg/aGGCgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610189	10610189	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	128	823	0	ENST00000171111.5:c.521del	p.Phe174SerfsTer56	p.F174Sfs*56	ENST00000171111	NM_203500.1	174	tTc/tc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180671	32180671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	57	751	0	ENST00000375023.3:c.2456C>A	p.Ala819Glu	p.A819E	ENST00000375023	NM_004557.3	819	gCa/gAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5055762	5055762	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	51	375	0	ENST00000381652.3:c.1030A>G	p.Ile344Val	p.I344V	ENST00000381652	NM_004972.3	344	Atc/Gtc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657674	37657674	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	182	530	0	ENST00000447079.4:c.2591A>T	p.Asn864Ile	p.N864I	ENST00000447079	NM_015083.1	864	aAc/aTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690810	89690813	+	frameshift_variant	Frame_Shift_Del	DEL	GAAA	GAAA	-			P-0040580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	405	344	0	ENST00000371953.3:c.219_222delAAGA	p.Glu73AspfsTer25	p.E73Dfs*25	ENST00000371953	NM_000314.4	73	GAAAga/ga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817750	3817757	+	frameshift_variant	Frame_Shift_Del	DEL	GACTGAGA	GACTGAGA	AAC			P-0040580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	230	703	1	ENST00000262367.5:c.3214_3221delinsGTT	p.Ser1072ValfsTer13	p.S1072Vfs*13	ENST00000262367	NM_004380.2	1072	TCTCAGTCa/GTTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817762	3817766	+	missense_variant	Missense_Mutation	ONP	GTGCC	GTGCC	AACGG			P-0040580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	43	729	1	ENST00000262367.5:c.3205_3209delinsCCGTT	p.Gly1069_Thr1070delinsProLeu	p.G1069_T1070delinsPL	ENST00000262367	NM_004380.2	1069	GGCACa/CCGTTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250851	153250852	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAA			P-0040580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	395	477	0	ENST00000281708.4:c.1206_1208dup	p.Thr402_Leu403insPhe	p.T402_L403insF	ENST00000281708	NM_033632.3	403	tta/ttTTTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622141	117622141	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	38	304	0	ENST00000368508.3:c.6729del	p.Phe2243LeufsTer8	p.F2243Lfs*8	ENST00000368508	NM_002944.2	2243	ttT/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	198	530	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577567	7577567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	217	771	0	ENST00000269305.4:c.714T>G	p.Cys238Trp	p.C238W	ENST00000269305	NM_001126112.2	238	tgT/tgG																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041630	14041630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	159	571	0	ENST00000311895.7:c.2177G>A	p.Arg726His	p.R726H	ENST00000311895	NM_005236.2	726	cGc/cAc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88659599	88659599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	363	745	0	ENST00000372037.3:c.382A>G	p.Asn128Asp	p.N128D	ENST00000372037	NM_004329.2	128	Aat/Gat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974787	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCGTGGCCAGCCAGTC	CGGCCGTGGCCAGCCAGTC	-			P-0040582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	161	274	1	ENST00000304494.5:c.40_58del	p.Asp14ArgfsTer6	p.D14Rfs*6	ENST00000304494	NM_000077.4	14	GACTGGCTGGCCACGGCCGcg/cg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974787	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCGTGGCCAGCCAGTC	CGGCCGTGGCCAGCCAGTC	-			P-0040582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	161	274	1	ENST00000304494.5:c.40_58del	p.Asp14ArgfsTer6	p.D14Rfs*6	ENST00000304494	NM_000077.4	14	GACTGGCTGGCCACGGCCGcg/cg																																																																														
MED12	9968	MSKCC	GRCh37	X	70342374	70342374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	221	397	0	ENST00000374080.3:c.1265G>A	p.Arg422Gln	p.R422Q	ENST00000374080		422	cGg/cAg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676268	37676268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	1246	616	0	ENST00000447079.4:c.3023G>A	p.Arg1008Gln	p.R1008Q	ENST00000447079	NM_015083.1	1008	cGg/cAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344782	118344783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	158	342	0	ENST00000534358.1:c.2914dup	p.Thr972AsnfsTer26	p.T972Nfs*26	ENST00000534358	NM_005933.3	970	gaa/gAaa																																																																														
AXL	558	MSKCC	GRCh37	19	41726609	41726609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	399	733	0	ENST00000301178.4:c.154G>A	p.Gly52Ser	p.G52S	ENST00000301178	NM_021913.4	52	Ggc/Agc																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778045	27778045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	574	478	0	ENST00000369163.2:c.194A>G	p.Lys65Arg	p.K65R	ENST00000369163	NM_003536.2	65	aAg/aGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	89	481	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	54	512	6	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	119	881	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0040591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	27	403	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276714	15276714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	83	979	0	ENST00000263388.2:c.5551C>T	p.Arg1851Cys	p.R1851C	ENST00000263388	NM_000435.2	1851	Cgt/Tgt																																																																														
PARP1	142	MSKCC	GRCh37	1	226555299	226555299	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	35	513	0	ENST00000366794.5:c.2288A>G	p.Glu763Gly	p.E763G	ENST00000366794	NM_001618.3	763	gAa/gGa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246667	46246684	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTGGTCCCGCAGGTAAG	TGTGGTCCCGCAGGTAAG	-			P-0040591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	15	200	0	ENST00000334344.6:c.4762_4773+6del		p.X1588_splice	ENST00000334344	NM_152641.2	1588																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	42	464	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	69	805	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220707	1220707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	105	731	1	ENST00000326873.7:c.725G>T	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGg/gTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500891	8500891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	75	568	0	ENST00000356435.5:c.1991G>T	p.Gly664Val	p.G664V	ENST00000356435		664	gGa/gTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412656	63412656	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	55	769	0	ENST00000330258.3:c.511G>T	p.Gly171Cys	p.G171C	ENST00000330258	NM_152424.3	171	Ggc/Tgc																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152858095	152858095	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	77	962	0	ENST00000406277.2:c.520del	p.Asp174ThrfsTer170	p.D174Tfs*170	ENST00000406277	NM_152274.4	174	Gac/ac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	53	523	0	ENST00000371953.3:c.48T>A	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taA																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190405	32190405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	59	994	0	ENST00000375023.3:c.334G>A	p.Glu112Lys	p.E112K	ENST00000375023	NM_004557.3	112	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577104	7577106	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0040595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	111	918	0	ENST00000269305.4:c.832_834del	p.Pro278del	p.P278del	ENST00000269305	NM_001126112.2	278	CCT/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	522	785	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88651917	88651917	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	87	517	0	ENST00000372037.3:c.264A>C	p.Glu88Asp	p.E88D	ENST00000372037	NM_004329.2	88	gaA/gaC																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061257	38061257	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	567	825	0	ENST00000250448.2:c.732G>A	p.Trp244Ter	p.W244*	ENST00000250448	NM_004496.3	244	tgG/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112162944	112162944	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0040597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	194	367	0	ENST00000257430.4:c.1548+1del		p.K516fs	ENST00000257430	NM_000038.5	516	aaG/aa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508137	106508137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	78	324	0	ENST00000359195.3:c.131T>C	p.Leu44Pro	p.L44P	ENST00000359195	NM_002649.2	44	cTg/cCg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38189093	38189093	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	192	573	0	ENST00000317025.8:c.921A>T	p.Glu307Asp	p.E307D	ENST00000317025	NM_023034.1	307	gaA/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	406	470	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	476	513	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714657	52714657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	158	386	2	ENST00000322088.6:c.415G>A	p.Asp139Asn	p.D139N	ENST00000322088	NM_014225.5	139	Gac/Aac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692910	89692910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	314	344	0	ENST00000371953.3:c.394G>T	p.Gly132Cys	p.G132C	ENST00000371953	NM_000314.4	132	Ggt/Tgt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098959	178098959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	164	158	0	ENST00000397062.3:c.86A>G	p.Asp29Gly	p.D29G	ENST00000397062	NM_006164.4	29	gAt/gGt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255277	16255277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	485	339	0	ENST00000375759.3:c.2542C>T	p.Pro848Ser	p.P848S	ENST00000375759	NM_015001.2	848	Cct/Tct																																																																														
RB1	5925	MSKCC	GRCh37	13	48955449	48955450	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	221	213	0	ENST00000267163.4:c.1568dup	p.Leu523PhefsTer5	p.L523Ffs*5	ENST00000267163	NM_000321.2	522	aat/aaTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132580	11132580	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	225	414	0	ENST00000344626.4:c.2796C>G	p.Ile932Met	p.I932M	ENST00000344626	NM_003072.3	932	atC/atG																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	47	184	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426582	49426582	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	133	493	0	ENST00000301067.7:c.11906A>T	p.Gln3969Leu	p.Q3969L	ENST00000301067	NM_003482.3	3969	cAg/cTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133249239	133249239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	108	427	0	ENST00000320574.5:c.1660A>G	p.Ser554Gly	p.S554G	ENST00000320574	NM_006231.2	554	Agc/Ggc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29068917	29068917	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	56	216	0	ENST00000282397.4:c.64G>A	p.Gly22Arg	p.G22R	ENST00000282397	NM_002019.4	22	Gga/Aga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637652	52637662	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAAGAAGAA	TGAAAGAAGAA	-			P-0040603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	81	256	0	ENST00000394830.3:c.2654_2664del	p.Ile885ThrfsTer12	p.I885Tfs*12	ENST00000394830	NM_018313.4	885	aTTCTTCTTTCA/a																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056055	26056055	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	78	288	0	ENST00000343677.2:c.602A>C	p.Lys201Thr	p.K201T	ENST00000343677	NM_005319.3	201	aAg/aCg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39935740	39935740	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	88	172	0	ENST00000378444.4:c.132A>C	p.Glu44Asp	p.E44D	ENST00000378444	NM_001123385.1	44	gaA/gaC																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0040608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	38	335	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	40	444	0	ENST00000263967.3:c.1625A>T	p.Glu542Val	p.E542V	ENST00000263967	NM_006218.2	542	gAa/gTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671558	30671558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	62	603	1	ENST00000376406.3:c.5402C>T	p.Pro1801Leu	p.P1801L	ENST00000376406	NM_014641.2	1801	cCg/cTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690848	89690848	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0040608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	23	298	0	ENST00000371953.3:c.253+2T>A		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
PTEN	5728	MSKCC	GRCh37	10	89690795	89690803	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTTTAGT	TCTTTTAGT	A			P-0040608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	24	282	0	ENST00000371953.3:c.210-8_210delinsA		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	322	786	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022532	12022532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	106	707	0	ENST00000396373.4:c.638C>T	p.Ser213Phe	p.S213F	ENST00000396373	NM_001987.4	213	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	231	488	0	ENST00000269305.4:c.673-2A>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974720	21974721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	189	405	0	ENST00000304494.5:c.106dupG	p.Ala36GlyfsTer8	p.A36Gfs*8	ENST00000304494	NM_000077.4	36	gcg/gGcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974720	21974721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	189	405	0	ENST00000304494.5:c.106dupG	p.Ala36GlyfsTer8	p.A36Gfs*8	ENST00000304494	NM_000077.4	36	gcg/gGcg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634747	158634747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	28	405	0	ENST00000263640.3:c.439C>T	p.Arg147Ter	p.R147*	ENST00000263640	NM_001105.4	147	Cga/Tga																																																																														
CCND2	894	MSKCC	GRCh37	12	4388017	4388017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	152	501	0	ENST00000261254.3:c.503C>A	p.Pro168His	p.P168H	ENST00000261254	NM_001759.3	168	cCc/cAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715666	18715666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	100	324	0	ENST00000266497.5:c.3497C>A	p.Pro1166His	p.P1166H	ENST00000266497		1166	cCt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442528	49442529	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	170	485	0	ENST00000301067.7:c.4044dup	p.Ser1349GlnfsTer2	p.S1349Qfs*2	ENST00000301067	NM_003482.3	1348	-/C																																																																														
DICER1	23405	MSKCC	GRCh37	14	95556929	95556929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	84	576	0	ENST00000343455.3:c.5675G>A	p.Gly1892Asp	p.G1892D	ENST00000343455	NM_177438.2	1892	gGt/gAt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15964751	15964751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	80	569	0	ENST00000268712.3:c.5845G>A	p.Glu1949Lys	p.E1949K	ENST00000268712	NM_006311.3	1949	Gaa/Aaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600333	10600333	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	115	629	0	ENST00000171111.5:c.1522A>C	p.Ser508Arg	p.S508R	ENST00000171111	NM_203500.1	508	Agc/Cgc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99162534	99162534	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	75	280	0	ENST00000074304.5:c.1052C>T	p.Ser351Leu	p.S351L	ENST00000074304	NM_001134224.1	351	tCa/tTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535345	187535345	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	259	453	0	ENST00000441802.2:c.9229G>C	p.Gly3077Arg	p.G3077R	ENST00000441802	NM_005245.3	3077	Ggt/Cgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554917	187554917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	292	541	0	ENST00000441802.2:c.4244A>G	p.Lys1415Arg	p.K1415R	ENST00000441802	NM_005245.3	1415	aAa/aGa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665292	176665292	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	68	462	0	ENST00000439151.2:c.3976C>G	p.Gln1326Glu	p.Q1326E	ENST00000439151	NM_022455.4	1326	Cag/Gag																																																																														
EZH2	2146	MSKCC	GRCh37	7	148516774	148516774	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	59	317	0	ENST00000320356.2:c.913C>G	p.His305Asp	p.H305D	ENST00000320356	NM_004456.4	305	Cat/Gat																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38178602	38178602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	185	464	0	ENST00000317025.8:c.1797C>G	p.Ile599Met	p.I599M	ENST00000317025	NM_023034.1	599	atC/atG																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341940	8341940	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	220	373	0	ENST00000356435.5:c.4700A>T	p.Asp1567Val	p.D1567V	ENST00000356435		1567	gAt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	305	291	0				ENST00000310581	NM_198253.2																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15302906	15302906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	238	746	1	ENST00000263388.2:c.544C>T	p.Arg182Cys	p.R182C	ENST00000263388	NM_000435.2	182	Cgc/Tgc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118359364	118359364	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	236	396	0	ENST00000534358.1:c.4368C>G	p.His1456Gln	p.H1456Q	ENST00000534358	NM_005933.3	1456	caC/caG																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	162	286	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	358	586	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21555733	21555736	+	protein_altering_variant	In_Frame_Del	DEL	GACA	GACA	C			P-0040617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	344	557	0	ENST00000382592.4:c.2534_2537delinsG	p.Val845_Ser846delinsGly	p.V845_S846delinsG	ENST00000382592	NM_014572.2	845	gTGTCt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	280	577	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110623	4110623	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201129499		P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	207	553	1	ENST00000262948.5:c.334C>T	p.Arg112Trp	p.R112W	ENST00000262948	NM_030662.3	112	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	84	286	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256751	16256751	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199784733		P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	145	529	1	ENST00000375759.3:c.4016G>A	p.Arg1339His	p.R1339H	ENST00000375759	NM_015001.2	1339	cGt/cAt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965421	18965421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	81	369	0	ENST00000262803.5:c.1168G>C	p.Glu390Gln	p.E390Q	ENST00000262803	NM_002911.3	390	Gag/Cag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89869687	89869687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	73	510	0	ENST00000389301.3:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000389301	NM_000135.2	258	Gag/Cag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18963805	18963806	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	22	356	0	ENST00000262803.5:c.982_983del	p.Asn328HisfsTer10	p.N328Hfs*10	ENST00000262803	NM_002911.3	328	AAc/c																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827951	40827951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	94	500	0	ENST00000373198.4:c.2477C>A	p.Pro826His	p.P826H	ENST00000373198	NM_133170.3	826	cCc/cAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535306	66535306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	186	536	0	ENST00000273854.3:c.155C>T	p.Thr52Ile	p.T52I	ENST00000273854	NM_004439.5	52	aCc/aTc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740356	145740356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	284	695	0	ENST00000428558.2:c.1584G>T	p.Leu528Phe	p.L528F	ENST00000428558	NM_004260.3	528	ttG/ttT																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027887	48027887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	36	358	0	ENST00000234420.5:c.2765G>A	p.Arg922Gln	p.R922Q	ENST00000234420	NM_000179.2	922	cGa/cAa																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612890	228612890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	74	571	2	ENST00000366696.1:c.137C>A	p.Thr46Lys	p.T46K	ENST00000366696	NM_003493.2	46	aCg/aAg																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683697	162683697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	71	473	0	ENST00000366898.1:c.272C>T	p.Ala91Val	p.A91V	ENST00000366898	NM_004562.2	91	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	336	683	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242475	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAG	GAATTAAGAG	C			P-0040684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	388	420	1	ENST00000275493.2:c.2236_2245delinsC	p.Glu746_Glu749delinsGln	p.E746_E749delinsQ	ENST00000275493	NM_005228.3	746	GAATTAAGAGaa/Caa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367345	50367345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	64	427	0	ENST00000331340.3:c.152G>A	p.Arg51Lys	p.R51K	ENST00000331340	NM_006060.4	51	aGa/aAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534710	18534710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	32	392	0	ENST00000266497.5:c.1768C>G	p.Leu590Val	p.L590V	ENST00000266497		590	Ctc/Gtc																																																																														
MGA	23269	MSKCC	GRCh37	15	42058213	42058213	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	49	266	0	ENST00000219905.7:c.7933T>G	p.Leu2645Val	p.L2645V	ENST00000219905	NM_001164273.1	2645	Tta/Gta																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	72	273	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	126	366	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119884	70119884	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	44	537	1	ENST00000245479.2:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000245479	NM_000346.3	296	Cag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469956	157469956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	177	493	1	ENST00000346085.5:c.2754delC	p.Ser919ValfsTer20	p.S919Vfs*20	ENST00000346085	NM_020732.3	917	aCc/ac																																																																														
PGR	5241	MSKCC	GRCh37	11	100933481	100933481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	38	180	0	ENST00000325455.5:c.1909C>G	p.Arg637Gly	p.R637G	ENST00000325455	NM_001202474.3	637	Cga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577113	7577114	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	268	640	0	ENST00000269305.4:c.824dup	p.Cys275TrpfsTer31	p.C275Wfs*31	ENST00000269305	NM_001126112.2	275	tgt/tgGt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489513	40489513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	54	536	0	ENST00000264657.5:c.737G>A	p.Arg246Gln	p.R246Q	ENST00000264657	NM_139276.2	246	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	140	538	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982094	201982095	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	98	667	0	ENST00000359651.3:c.619dup	p.Ser207PhefsTer10	p.S207Ffs*10	ENST00000359651		206	-/T																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604671	48604671	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0040689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	62	377	0	ENST00000342988.3:c.1493T>G	p.Leu498Ter	p.L498*	ENST00000342988	NM_005359.5	498	tTa/tGa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152420057	152420057	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	75	506	0	ENST00000206249.3:c.1744T>C	p.Tyr582His	p.Y582H	ENST00000206249	NM_000125.3	582	Tat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974675	21974675	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0040689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	108	465	0	ENST00000304494.5:c.150+2T>C		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974675	21974675	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0040689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	108	465	0	ENST00000304494.5:c.150+2T>C		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0040692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	55	417	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040995	47040995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	51	400	0	ENST00000329236.7:c.1291C>T	p.Gln431Ter	p.Q431*	ENST00000329236	NM_001204466.1	431	Caa/Taa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244940	46244940	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	80	592	0	ENST00000334344.6:c.3034C>T	p.Gln1012Ter	p.Q1012*	ENST00000334344	NM_152641.2	1012	Cag/Tag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391421	139391421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	18	648	0	ENST00000277541.6:c.6770C>T	p.Ala2257Val	p.A2257V	ENST00000277541	NM_017617.3	2257	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578408	7578411	+	frameshift_variant	Frame_Shift_Del	DEL	CCTC	CCTC	-			P-0040729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	55	566	0	ENST00000269305.4:c.519_522del	p.Arg174AlafsTer72	p.R174Afs*72	ENST00000269305	NM_001126112.2	173	gtGAGG/gt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243859016	243859016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	13	178	0	ENST00000263826.5:c.49G>A	p.Glu17Lys	p.E17K	ENST00000263826	NM_005465.4	17	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112176020	112176020	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	46	190	0	ENST00000257430.4:c.4729G>T	p.Glu1577Ter	p.E1577*	ENST00000257430	NM_000038.5	1577	Gaa/Taa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100286	8100286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	159	501	0	ENST00000346208.3:c.260C>T	p.Pro87Leu	p.P87L	ENST00000346208		87	cCg/cTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907380	32907381	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0040739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	23	223	0	ENST00000380152.3:c.1765_1766del	p.Lys589ValfsTer7	p.K589Vfs*7	ENST00000380152		589	AAg/g																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47596687	47596688	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0040739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	94	281	1	ENST00000263735.4:c.43_44delinsTT	p.Ala15Leu	p.A15L	ENST00000263735	NM_002354.2	15	GCg/TTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151848025	151848046	+	frameshift_variant	Frame_Shift_Del	DEL	AGAATAAAGCAGTTATTACTAC	AGAATAAAGCAGTTATTACTAC	-			P-0040739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	38	196	0	ENST00000262189.6:c.12713_12734del	p.Cys4238PhefsTer25	p.C4238Ffs*25	ENST00000262189	NM_170606.2	4238	tGTAGTAATAACTGCTTTATTCTt/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	50	670	1	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46233223	46233235	+	frameshift_variant	Frame_Shift_Del	DEL	TTAGGCCACAAGC	TTAGGCCACAAGC	-			P-0040747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	30	284	0	ENST00000334344.6:c.1443_1455del	p.Arg482Ter	p.R482*	ENST00000334344	NM_152641.2	481	aTTAGGCCACAAGCt/at																																																																														
NF1	4763	MSKCC	GRCh37	17	29685511	29685511	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	165	211	0	ENST00000358273.4:c.7984G>C	p.Asp2662His	p.D2662H	ENST00000358273	NM_001042492.2	2662	Gac/Cac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944427	40944427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	233	465	0	ENST00000373198.4:c.2075A>T	p.Asn692Ile	p.N692I	ENST00000373198	NM_133170.3	692	aAc/aTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153259036	153259036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	82	124	0	ENST00000281708.4:c.779G>A	p.Cys260Tyr	p.C260Y	ENST00000281708	NM_033632.3	260	tGt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577521	7577521	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	CG			P-0040748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	313	666	0	ENST00000269305.4:c.760delinsCG	p.Ile254ArgfsTer10	p.I254Rfs*10	ENST00000269305	NM_001126112.2	254	Atc/CGtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578181	7578181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020150-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			86	440	813	0	ENST00000269305.4:c.668C>T	p.Pro223Leu	p.P223L	ENST00000269305	NM_001126112.2	223	cCt/cTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023414	27023437	+	inframe_deletion	In_Frame_Del	DEL	GGCGGACAACAAAGCCCTGGCCTG	GGCGGACAACAAAGCCCTGGCCTG	-			P-0020150-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	364	160	0	ENST00000324856.7:c.521_544del	p.Gly174_Leu181del	p.G174_L181del	ENST00000324856	NM_006015.4	174	GGCGGACAACAAAGCCCTGGCCTG/-																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505528	157505528	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020150-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	366	177	0	ENST00000346085.5:c.3509G>C	p.Gly1170Ala	p.G1170A	ENST00000346085	NM_020732.3	1170	gGg/gCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025699-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	119	143	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0025699-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	120	93	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412493	80412493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025699-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	22	69	0	ENST00000286548.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000286548	NM_002072.3	183	cGa/cAa																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870257	155870257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025699-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	108	140	0	ENST00000368323.3:c.582G>T	p.Glu194Asp	p.E194D	ENST00000368323	NM_006912.5	194	gaG/gaT																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176153806	176153806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025699-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	77	80	0	ENST00000367669.3:c.430G>A	p.Glu144Lys	p.E144K	ENST00000367669	NM_022457.5	144	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690810	89690810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025699-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	46	64	0	ENST00000371953.3:c.217G>A	p.Glu73Lys	p.E73K	ENST00000371953	NM_000314.4	73	Gaa/Aaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602532	10602532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025699-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	101	161	0	ENST00000171111.5:c.1046A>G	p.Asp349Gly	p.D349G	ENST00000171111	NM_203500.1	349	gAc/gGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41531867	41531867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025699-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	190	130	0	ENST00000263253.7:c.1579C>T	p.Leu527Phe	p.L527F	ENST00000263253	NM_001429.3	527	Ctt/Ttt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023387	27023387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025699-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	56	68	0	ENST00000324856.7:c.493G>A	p.Ala165Thr	p.A165T	ENST00000324856	NM_006015.4	165	Gcg/Acg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	90	870	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314932	1314932	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	24	510	0				ENST00000381566																																																																																	
NF1	4763	MSKCC	GRCh37	17	29509630	29509630	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	43	533	0	ENST00000358273.4:c.835G>T	p.Glu279Ter	p.E279*	ENST00000358273	NM_001042492.2	279	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27102083	27102083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	85	684	1	ENST00000324856.7:c.5009G>T	p.Trp1670Leu	p.W1670L	ENST00000324856	NM_006015.4	1670	tGg/tTg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838398	156838398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			840	103	919	0	ENST00000524377.1:c.676G>T	p.Gly226Cys	p.G226C	ENST00000524377	NM_002529.3	226	Ggc/Tgc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163310201	163310201	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	452	41	0	ENST00000271452.3:c.654G>C	p.Glu218Asp	p.E218D	ENST00000271452	NM_145697.2	218	gaG/gaC																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115928	8115928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	62	542	0	ENST00000346208.3:c.1274C>A	p.Pro425Gln	p.P425Q	ENST00000346208		425	cCa/cAa																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518491	69518491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	430	45	2	ENST00000294312.3:c.154C>A	p.Pro52Thr	p.P52T	ENST00000294312	NM_005117.2	52	Ccc/Acc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005294	29005294	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	458	18	0	ENST00000282397.4:c.967A>C	p.Asn323His	p.N323H	ENST00000282397	NM_002019.4	323	Aac/Cac																																																																														
MGA	23269	MSKCC	GRCh37	15	42021449	42021449	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	555	60	0	ENST00000219905.7:c.3745G>T	p.Glu1249Ter	p.E1249*	ENST00000219905	NM_001164273.1	1249	Gag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29663729	29663729	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	546	46	0	ENST00000358273.4:c.6226del	p.Asp2076MetfsTer6	p.D2076Mfs*6	ENST00000358273	NM_001042492.2	2075	tGg/tg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212252719	212252719	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	208	11	0	ENST00000342788.4:c.3136-2A>T		p.X1046_splice	ENST00000342788	NM_005235.2	1046																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134967226	134967226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	624	48	1	ENST00000398015.3:c.2565G>T	p.Gln855His	p.Q855H	ENST00000398015	NM_004441.4	855	caG/caT																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374727	149374727	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	51	608	0	ENST00000360632.3:c.367G>T	p.Glu123Ter	p.E123*	ENST00000360632	NM_015472.4	123	Gag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184724	32184724	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			702	723	41	1	ENST00000375023.3:c.1859C>T	p.Thr620Ile	p.T620I	ENST00000375023	NM_004557.3	620	aCa/aTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099547	157099547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	23	170	0	ENST00000346085.5:c.484G>T	p.Ala162Ser	p.A162S	ENST00000346085	NM_020732.3	162	Gcc/Tcc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372526	55372526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			750	1066	55	1	ENST00000297316.4:c.1216G>T	p.Val406Leu	p.V406L	ENST00000297316	NM_022454.3	406	Gta/Tta																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395174	139395174	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			741	975	79	0	ENST00000277541.6:c.5764A>T	p.Asn1922Tyr	p.N1922Y	ENST00000277541	NM_017617.3	1922	Aac/Tac																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411375	63411375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029528-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	31	393	0	ENST00000330258.3:c.1792G>T	p.Ala598Ser	p.A598S	ENST00000330258	NM_152424.3	598	Gcc/Tcc																																																																														
YES1	7525	MSKCC	GRCh37	18	736907	736907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	57	396	0	ENST00000314574.4:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000314574	NM_005433.3	398	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	127	710	2				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27107151	27107151	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	146	388	0	ENST00000324856.7:c.6762C>G	p.Tyr2254Ter	p.Y2254*	ENST00000324856	NM_006015.4	2254	taC/taG																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40456672	40456672	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0040045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	544	134	0	ENST00000345506.4:c.1380+2T>G		p.X460_splice	ENST00000345506	NM_003152.3	460																																																																															
ERF	2077	MSKCC	GRCh37	19	42754631	42754695	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCTCCAGGATAAAGTGCCACAGCTGGATCTGCCTTGAGCCAGGGGACGACTCTGGCTTGTAG	GCAGCTCCAGGATAAAGTGCCACAGCTGGATCTGCCTTGAGCCAGGGGACGACTCTGGCTTGTAG	-			P-0040045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	57	681	0	ENST00000222329.4:c.45_109del	p.Tyr16AlafsTer24	p.Y16Afs*24	ENST00000222329	NM_006494.2	15	gcCTACAAGCCAGAGTCGTCCCCTGGCTCAAGGCAGATCCAGCTGTGGCACTTTATCCTGGAGCTGCtg/gctg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597463	52597464	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	112	345	0	ENST00000394830.3:c.3846dup	p.Lys1283GlufsTer8	p.K1283Efs*8	ENST00000394830	NM_018313.4	1282	-/G																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204926	128204927	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0040045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	1210	173	2	ENST00000341105.2:c.514_515delinsAA	p.Gly172Asn	p.G172N	ENST00000341105	NM_032638.4	172	GGc/AAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187423	32187423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	184	823	1	ENST00000375023.3:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000375023	NM_004557.3	486	Cca/Tca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864347	151864347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	388	118	1	ENST00000262189.6:c.9634C>T	p.Leu3212Phe	p.L3212F	ENST00000262189	NM_170606.2	3212	Ctt/Ttt																																																																														
SYK	6850	MSKCC	GRCh37	9	93606587	93606587	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	419	108	0	ENST00000375746.1:c.407G>A	p.Trp136Ter	p.W136*	ENST00000375746	NM_001174167.1	136	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	588	530	1	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453412	40453435	+	inframe_deletion	In_Frame_Del	DEL	AGGCCACCATCATCAGTGAGCAGC	AGGCCACCATCATCAGTGAGCAGC	-			P-0040644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	640	174	0	ENST00000345506.4:c.1115_1138del	p.Thr372_Ala379del	p.T372_A379del	ENST00000345506	NM_003152.3	370	aAGGCCACCATCATCAGTGAGCAGCag/aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0040676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	130	895	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
ERG	2078	MSKCC	GRCh37	21	39755606	39755606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	53	665	0	ENST00000288319.7:c.1159G>A	p.Ala387Thr	p.A387T	ENST00000288319	NM_182918.3	387	Gcc/Acc																																																																														
YES1	7525	MSKCC	GRCh37	18	756622	756622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	49	625	1	ENST00000314574.4:c.206C>T	p.Thr69Met	p.T69M	ENST00000314574	NM_005433.3	69	aCg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227679	36227681	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0040676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	65	791	0	ENST00000222270.7:c.7248_7250del	p.Phe2416_Glu2417delinsLeu	p.F2416_E2417delinsL	ENST00000222270	NM_014727.1	2416	ttCGAg/ttg																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	108	919	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	119	811	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	62	370	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	59	378	1	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	131	409	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	71	505	8	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	98	772	0	ENST00000396946.4:c.1663dupC	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	41	602	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	103	478	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144049	11144051	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	142	795	1	ENST00000344626.4:c.3634_3636del	p.Glu1212del	p.E1212del	ENST00000344626	NM_003072.3	1210	gtGGAg/gtg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14042043	14042043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	364	59	0	ENST00000311895.7:c.2590C>T	p.Arg864Cys	p.R864C	ENST00000311895	NM_005236.2	864	Cgc/Tgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349641	89349641	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1064796815		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	140	877	6	ENST00000301030.4:c.3309del	p.Asp1104MetfsTer214	p.D1104Mfs*214	ENST00000301030	NM_001256183.1	1103	aaA/aa																																																																														
CASP8	841	MSKCC	GRCh37	2	202149917	202149917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	129	668	1	ENST00000358485.4:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000358485	NM_001080125.1	453	cCg/cTg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570292	87570292	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1463968979		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	98	606	0	ENST00000277120.3:c.2032G>A	p.Ala678Thr	p.A678T	ENST00000277120		678	Gcg/Acg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257366	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	105	797	1	ENST00000162023.5:c.767delC	p.Pro256GlnfsTer?	p.P256Qfs*?	ENST00000162023		256	cCa/ca																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7989406	7989406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs8077661		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	888	151	0	ENST00000319144.4:c.280G>A	p.Gly94Ser	p.G94S	ENST00000319144	NM_001139.2	94	Ggc/Agc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5245795	5245795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	133	794	0	ENST00000357368.4:c.980C>T	p.Thr327Met	p.T327M	ENST00000357368	NM_002850.3	327	aCg/aTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89335037	89335037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	262	45	0	ENST00000301030.4:c.7841C>T	p.Ala2614Val	p.A2614V	ENST00000301030	NM_001256183.1	2614	gCg/gTg																																																																														
ERG	2078	MSKCC	GRCh37	21	39755427	39755427	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	69	616	2	ENST00000288319.7:c.1338delT	p.Phe446LeufsTer59	p.F446Lfs*59	ENST00000288319	NM_182918.3	446	ttT/tt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554356	63554357	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	109	678	0	ENST00000307078.5:c.382_383del	p.Leu128ThrfsTer12	p.L128Tfs*12	ENST00000307078	NM_004655.3	128	TTa/a																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656969	47656969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	56	400	0	ENST00000233146.2:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000233146	NM_000251.2	389	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	98	535	1	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954975	2954975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	123	764	0	ENST00000396946.4:c.2735G>A	p.Arg912Gln	p.R912Q	ENST00000396946	NM_032415.4	912	cGg/cAg																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564755	139564755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	124	884	1	ENST00000308874.7:c.549del	p.Arg184GlyfsTer13	p.R184Gfs*13	ENST00000308874		182	Ccc/cc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288998	33288998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	93	601	1	ENST00000374542.5:c.554G>A	p.Arg185Gln	p.R185Q	ENST00000374542	NM_001141970.1	185	cGg/cAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963988	2963988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	84	668	0	ENST00000396946.4:c.1819G>A	p.Glu607Lys	p.E607K	ENST00000396946	NM_032415.4	607	Gaa/Aaa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120529603	120529603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	91	542	2	ENST00000256646.2:c.854G>A	p.Arg285His	p.R285H	ENST00000256646	NM_024408.3	285	cGc/cAc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90628072	90628072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	129	860	6	ENST00000330062.3:c.1247C>T	p.Ala416Val	p.A416V	ENST00000330062	NM_002168.2	416	gCg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445500	49445500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	114	919	1	ENST00000301067.7:c.1966delC	p.Leu656CysfsTer274	p.L656Cfs*274	ENST00000301067	NM_003482.3	656	Ctg/tg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468398	89468398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	30	285	0	ENST00000336596.2:c.1938delA	p.Glu647ArgfsTer9	p.E647Rfs*9	ENST00000336596	NM_005233.5	644	tcA/tc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	148	968	5	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795061	242795061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	137	1045	2	ENST00000334409.5:c.148G>A	p.Ala50Thr	p.A50T	ENST00000334409	NM_005018.2	50	Gcc/Acc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7982767	7982767	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	129	790	0	ENST00000319144.4:c.1018delC	p.Leu340SerfsTer12	p.L340Sfs*12	ENST00000319144	NM_001139.2	340	Ctc/tc																																																																														
B2M	567	MSKCC	GRCh37	15	45007752	45007753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	67	376	1	ENST00000558401.1:c.204dup	p.Val69SerfsTer21	p.V69Sfs*21	ENST00000558401	NM_004048.2	67	gaa/gAaa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99185045	99185045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	60	447	1	ENST00000074304.5:c.2447C>T	p.Thr816Met	p.T816M	ENST00000074304	NM_001134224.1	816	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424970	49424970	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783691		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	132	759	1	ENST00000301067.7:c.13518del	p.Ser4507AlafsTer12	p.S4507Afs*12	ENST00000301067	NM_003482.3	4506	ccC/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437711	49437713	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	100	767	0	ENST00000301067.7:c.5257_5259del	p.Lys1753del	p.K1753del	ENST00000301067	NM_003482.3	1753	AAG/-																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478548	99478548	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	53	325	0	ENST00000268035.6:c.3190C>T	p.Arg1064Ter	p.R1064*	ENST00000268035	NM_000875.3	1064	Cga/Tga																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874166	155874166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	85	673	0	ENST00000368323.3:c.365G>A	p.Arg122Gln	p.R122Q	ENST00000368323	NM_006912.5	122	cGa/cAa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169985727	169985727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	99	511	0	ENST00000295797.4:c.389G>A	p.Arg130His	p.R130H	ENST00000295797	NM_002740.5	130	cGc/cAc																																																																														
INSR	3643	MSKCC	GRCh37	19	7122996	7122996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	127	790	1	ENST00000302850.5:c.3263G>A	p.Arg1088His	p.R1088H	ENST00000302850	NM_000208.2	1088	cGc/cAc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859930	117859930	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	25	218	0	ENST00000297338.2:c.1705C>T	p.Arg569Cys	p.R569C	ENST00000297338	NM_006265.2	569	Cgt/Tgt																																																																														
INSR	3643	MSKCC	GRCh37	19	7267470	7267470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	114	641	0	ENST00000302850.5:c.538G>A	p.Glu180Lys	p.E180K	ENST00000302850	NM_000208.2	180	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630906	187630906	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	99	544	0	ENST00000441802.2:c.76C>T	p.Arg26Ter	p.R26*	ENST00000441802	NM_005245.3	26	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229336	36229336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	93	663	1	ENST00000222270.7:c.8026G>A	p.Ala2676Thr	p.A2676T	ENST00000222270	NM_014727.1	2676	Gcc/Acc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40709549	40709549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	71	558	1	ENST00000373198.4:c.4353G>T	p.Glu1451Asp	p.E1451D	ENST00000373198	NM_133170.3	1451	gaG/gaT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701242	43701242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	91	638	0	ENST00000382044.4:c.5453G>A	p.Arg1818Gln	p.R1818Q	ENST00000382044	NM_001141980.1	1818	cGg/cAg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141551418	141551418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	78	660	0	ENST00000220592.5:c.1879G>A	p.Ala627Thr	p.A627T	ENST00000220592	NM_012154.3	627	Gcc/Acc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17117006	17117006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	95	700	2	ENST00000285071.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000285071	NM_144997.5	568	aCg/aTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868219	37868219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	126	696	0	ENST00000269571.5:c.940G>A	p.Val314Ile	p.V314I	ENST00000269571		314	Gtc/Atc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40456593	40456593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	131	781	1	ENST00000345506.4:c.1303G>A	p.Val435Met	p.V435M	ENST00000345506	NM_003152.3	435	Gtg/Atg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40468878	40468878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	71	393	1	ENST00000264657.5:c.2186G>A	p.Arg729His	p.R729H	ENST00000264657	NM_139276.2	729	cGc/cAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554128	63554128	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	755	112	0	ENST00000307078.5:c.611del	p.Gly204GlufsTer7	p.G204Efs*7	ENST00000307078	NM_004655.3	204	gGa/ga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11151999	11151999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	70	572	0	ENST00000344626.4:c.4187C>T	p.Thr1396Met	p.T1396M	ENST00000344626	NM_003072.3	1396	aCg/aTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152170	11152170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	105	730	0	ENST00000344626.4:c.4358C>A	p.Pro1453His	p.P1453H	ENST00000344626	NM_003072.3	1453	cCt/cAt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18971731	18971731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	747	158	1	ENST00000262803.5:c.2397G>T	p.Gln799His	p.Q799H	ENST00000262803	NM_002911.3	799	caG/caT																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855888	45855888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	158	845	1	ENST00000391945.4:c.1922G>A	p.Arg641Gln	p.R641Q	ENST00000391945	NM_000400.3	641	cGg/cAg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25994394	25994394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	62	325	0	ENST00000435504.4:c.419C>T	p.Pro140Leu	p.P140L	ENST00000435504		140	cCg/cTg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561397	9561397	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	570	58	0	ENST00000353224.5:c.385T>A	p.Ser129Thr	p.S129T	ENST00000353224	NM_177990.2	129	Tcc/Acc																																																																														
SRC	6714	MSKCC	GRCh37	20	36012606	36012606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	71	424	0	ENST00000358208.4:c.50G>T	p.Ser17Ile	p.S17I	ENST00000358208		17	aGc/aTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499430	89499430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	69	513	1	ENST00000336596.2:c.2600A>G	p.Asn867Ser	p.N867S	ENST00000336596	NM_005233.5	867	aAc/aGc																																																																														
ATR	545	MSKCC	GRCh37	3	142257375	142257375	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	82	511	0	ENST00000350721.4:c.3674T>C	p.Ile1225Thr	p.I1225T	ENST00000350721	NM_001184.3	1225	aTc/aCc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185183639	185183641	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	81	402	0	ENST00000265026.3:c.1495_1497del	p.Glu499del	p.E499del	ENST00000265026	NM_004721.4	498	aAGGag/aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518873	187518873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	92	572	0	ENST00000441802.2:c.12331G>A	p.Ala4111Thr	p.A4111T	ENST00000441802	NM_005245.3	4111	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112102098	112102098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	29	288	0	ENST00000257430.4:c.211C>T	p.Arg71Cys	p.R71C	ENST00000257430	NM_000038.5	71	Cgt/Tgt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056387	26056387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	67	427	0	ENST00000343677.2:c.270G>T	p.Lys90Asn	p.K90N	ENST00000343677	NM_005319.3	90	aaG/aaT																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023181	150023181	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191160444		P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	64	627	0	ENST00000253339.5:c.82C>T	p.Arg28Trp	p.R28W	ENST00000253339		28	Cgg/Tgg																																																																														
SMO	6608	MSKCC	GRCh37	7	128850934	128850934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	672	101	0	ENST00000249373.3:c.1781T>C	p.Val594Ala	p.V594A	ENST00000249373	NM_005631.4	594	gTg/gCg																																																																														
BRAF	673	MSKCC	GRCh37	7	140500178	140500178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	168	879	1	ENST00000288602.6:c.964G>A	p.Ala322Thr	p.A322T	ENST00000288602	NM_004333.4	322	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859843	151859845	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	49	392	0	ENST00000262189.6:c.10817_10819del	p.Arg3606del	p.R3606del	ENST00000262189	NM_170606.2	3606	aGAAca/aca																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38194865	38194865	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	721	103	0	ENST00000317025.8:c.868A>C	p.Ser290Arg	p.S290R	ENST00000317025	NM_023034.1	290	Agt/Cgt																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38194927	38194927	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	742	133	2	ENST00000317025.8:c.806A>G	p.Gln269Arg	p.Q269R	ENST00000317025	NM_023034.1	269	cAg/cGg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779093	135779093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	88	490	1	ENST00000298552.3:c.2153G>A	p.Arg718Gln	p.R718Q	ENST00000298552	NM_001162426.1	718	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	133	280	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554933	106554933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	31	269	0	ENST00000369096.4:c.2050G>A	p.Glu684Lys	p.E684K	ENST00000369096	NM_001198.3	684	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427996	49427997	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0012598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	36	237	0	ENST00000301067.7:c.10593_10594del	p.Gln3531HisfsTer24	p.Q3531Hfs*24	ENST00000301067	NM_003482.3	3531	caGAtt/catt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926888	112926888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	47	135	0	ENST00000351677.2:c.1508G>T	p.Gly503Val	p.G503V	ENST00000351677	NM_002834.3	503	gGg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	257	214	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	402	638	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222268	2222553	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	CTTCATCCACTGCCGGCACGGCTGCCGGGTAGCGGGCAGCGGGAAGCCCCCCATCTTTGAGGTGGACCCCCGAGGGTGCCCCTTCACCATCAAGCTCAGCGCCCGGAAGTAAGTGCCCCTCCCTGGGCACCTCTGCCTCCCTGGGGGCTGCTTCTCAGGGCTCTGGCTGAGGCCTCCCCGCATCCCGCCCTGGCACAGGGACCACGAGGGCAGCTGTGACTACAGGCCTGTGCGGTGTCCCAACAACCCCAGCTGCCCCCCGCTGCTCAGGATGAACCTGGAGGCC	CTTCATCCACTGCCGGCACGGCTGCCGGGTAGCGGGCAGCGGGAAGCCCCCCATCTTTGAGGTGGACCCCCGAGGGTGCCCCTTCACCATCAAGCTCAGCGCCCGGAAGTAAGTGCCCCTCCCTGGGCACCTCTGCCTCCCTGGGGGCTGCTTCTCAGGGCTCTGGCTGAGGCCTCCCCGCATCCCGCCCTGGCACAGGGACCACGAGGGCAGCTGTGACTACAGGCCTGTGCGGTGTCCCAACAACCCCAGCTGCCCCCCGCTGCTCAGGATGAACCTGGAGGCC	-			P-0016163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1295	76	598	0	ENST00000326181.6:c.553_748del		p.X185_splice	ENST00000326181	NM_032271.2	185	ctCTTCATCCACTGCCGGCACGGCTGCCGGGTAGCGGGCAGCGGGAAGCCCCCCATCTTTGAGGTGGACCCCCGAGGGTGCCCCTTCACCATCAAGCTCAGCGCCCGGAAGTAAGTGCCCCTCCCTGGGCACCTCTGCCTCCCTGGGGGCTGCTTCTCAGGGCTCTGGCTGAGGCCTCCCCGCATCCCGCCCTGGCACAGGGACCACGAGGGCAGCTGTGACTACAGGCCTGTGCGGTGTCCCAACAACCCCAGCTGCCCCCCGCTGCTCAGGATGAACCTGGAGGCC/ct																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	101	266	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
EP300	2033	MSKCC	GRCh37	22	41566556	41566556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	73	221	0	ENST00000263253.7:c.4433G>A	p.Arg1478His	p.R1478H	ENST00000263253	NM_001429.3	1478	cGt/cAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912181	114912181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	82	357	0	ENST00000543371.1:c.1251G>T	p.Trp417Cys	p.W417C	ENST00000543371	NM_001198531.1	417	tgG/tgT																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67358554	67358556	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	AA			P-0016389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	104	224	2	ENST00000327367.4:c.62_64delinsAA	p.Gly21GlufsTer95	p.G21Efs*95	ENST00000327367	NM_005902.3	21	gGCGag/gAAag																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374909	45374909	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	117	251	0	ENST00000262160.6:c.934T>G	p.Cys312Gly	p.C312G	ENST00000262160	NM_005901.5	312	Tgc/Ggc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931678	39931678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	152	377	0	ENST00000378444.4:c.2921G>C	p.Gly974Ala	p.G974A	ENST00000378444	NM_001123385.1	974	gGt/gCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	103	445	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	167	276	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28959057	28959057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	60	211	1	ENST00000282397.4:c.2081G>T	p.Trp694Leu	p.W694L	ENST00000282397	NM_002019.4	694	tGg/tTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5246051	5246051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	65	92	0	ENST00000357368.4:c.724C>T	p.Arg242Cys	p.R242C	ENST00000357368	NM_002850.3	242	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281358	15281358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	199	196	3	ENST00000263388.2:c.4898C>T	p.Pro1633Leu	p.P1633L	ENST00000263388	NM_000435.2	1633	cCg/cTg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721792	176721792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	86	216	0	ENST00000439151.2:c.7423G>T	p.Val2475Phe	p.V2475F	ENST00000439151	NM_022455.4	2475	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	369	334	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108224492	108224492	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0017005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	104	141	0	ENST00000278616.4:c.8672-1G>A		p.X2891_splice	ENST00000278616	NM_000051.3	2891																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	273	352	6	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	575	355	9	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0017200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	130	291	2	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589588	67589590	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0017200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	80	318	2	ENST00000274335.5:c.1351_1353del	p.Glu451del	p.E451del	ENST00000274335		451	GAA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	110	360	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68842641	68842641	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	103	430	0	ENST00000261769.5:c.577A>C	p.Thr193Pro	p.T193P	ENST00000261769	NM_004360.3	193	Act/Cct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93953227	93953227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	88	407	0	ENST00000369303.4:c.2914G>A	p.Gly972Ser	p.G972S	ENST00000369303	NM_004440.3	972	Ggt/Agt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959106	2959106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1262	175	345	1	ENST00000396946.4:c.2410C>T	p.Arg804Cys	p.R804C	ENST00000396946	NM_032415.4	804	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0017664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	70	11	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553290	106553290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	95	27	0	ENST00000369096.4:c.1255G>A	p.Gly419Ser	p.G419S	ENST00000369096	NM_001198.3	419	Ggc/Agc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852242	128852242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140172891		P-0017664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	100	57	0	ENST00000249373.3:c.2314C>T	p.Arg772Cys	p.R772C	ENST00000249373	NM_005631.4	772	Cgc/Tgc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972485	81972485	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1462	289	136	0	ENST00000359376.3:c.3278A>T	p.Glu1093Val	p.E1093V	ENST00000359376	NM_002661.3	1093	gAg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578237	7578245	+	inframe_deletion	In_Frame_Del	DEL	CTCCACACG	CTCCACACG	-			P-0017664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	310	65	0	ENST00000269305.4:c.604_612delCGTGTGGAG	p.Arg202_Glu204del	p.R202_E204del	ENST00000269305	NM_001126112.2	202	CGTGTGGAG/-																																																																														
BARD1	580	MSKCC	GRCh37	2	215645739	215645739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	106	33	0	ENST00000260947.4:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000260947	NM_000465.2	287	Gag/Cag																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750758	39750758	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	306	16	0	ENST00000361337.2:c.2158A>G	p.Lys720Glu	p.K720E	ENST00000361337	NM_003286.2	720	Aaa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	71	153	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0017736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	56	141	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	28	87	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120471712	120471712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75423398		P-0017736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	108	281	0	ENST00000256646.2:c.3779G>A	p.Arg1260His	p.R1260H	ENST00000256646	NM_024408.3	1260	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0017736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	42	144	0	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108206594	108206594	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	43	143	0	ENST00000278616.4:c.8174A>G	p.Asp2725Gly	p.D2725G	ENST00000278616	NM_000051.3	2725	gAt/gGt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045912	143045912	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	28	89	1	ENST00000262992.4:c.1722G>T	p.Glu574Asp	p.E574D	ENST00000262992	NM_001101669.1	574	gaG/gaT																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31495463	31495463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	91	285	0	ENST00000344624.3:c.1685G>A	p.Arg562His	p.R562H	ENST00000344624		562	cGt/cAt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589585	67589586	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATGAAT			P-0017736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	11	153	0	ENST00000274335.5:c.1351_1356dup	p.Glu451_Tyr452dup	p.E451_Y452dup	ENST00000274335		451	cat/cATGAATat																																																																														
APC	324	MSKCC	GRCh37	5	112175663	112175663	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	72	171	0	ENST00000257430.4:c.4373delC	p.Pro1458LeufsTer15	p.P1458Lfs*15	ENST00000257430	NM_000038.5	1458	Cct/ct																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002837	69002837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	30	141	0	ENST00000288368.4:c.2137C>A	p.Leu713Ile	p.L713I	ENST00000288368	NM_024870.2	713	Ctt/Att																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	387	405	3	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
AURKA	6790	MSKCC	GRCh37	20	54956538	54956538	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	115	310	0	ENST00000312783.6:c.656A>T	p.Tyr219Phe	p.Y219F	ENST00000312783	NM_198436.1	219	tAt/tTt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430947	181430947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	312	306	1	ENST00000325404.1:c.799G>T	p.Ala267Ser	p.A267S	ENST00000325404	NM_003106.3	267	Gcc/Tcc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517532	176517532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200146267		P-0018202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	140	358	0	ENST00000292408.4:c.233G>A	p.Arg78His	p.R78H	ENST00000292408	NM_213647.1	78	cGt/cAt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395736	45395736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	10	188	0	ENST00000262160.6:c.398G>A	p.Arg133His	p.R133H	ENST00000262160	NM_005901.5	133	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	197	506	0	ENST00000269305.4:c.857A>C	p.Glu286Ala	p.E286A	ENST00000269305	NM_001126112.2	286	gAa/gCa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023647	27023648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTC			P-0018218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	76	221	0	ENST00000324856.7:c.759_762dupCTCC	p.Ser255LeufsTer146	p.S255Lfs*146	ENST00000324856	NM_006015.4	251	-/CCTC																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63829540	63829540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	35	226	0	ENST00000279873.7:c.1183C>T	p.Arg395Cys	p.R395C	ENST00000279873	NM_032199.2	395	Cgc/Tgc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495133	56495133	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	335	50	1	ENST00000267101.3:c.3490A>T	p.Thr1164Ser	p.T1164S	ENST00000267101	NM_001982.3	1164	Aca/Tca																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78829307	78829307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	34	335	0	ENST00000306801.3:c.1358T>C	p.Leu453Pro	p.L453P	ENST00000306801	NM_020761.2	453	cTt/cCt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372095	45372095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	14	258	0	ENST00000262160.6:c.1074G>T	p.Gln358His	p.Q358H	ENST00000262160	NM_005901.5	358	caG/caT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132501	11132501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	148	359	0	ENST00000344626.4:c.2717G>A	p.Arg906His	p.R906H	ENST00000344626	NM_003072.3	906	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245352	153245353	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0018218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	244	79	0	ENST00000281708.4:c.1838_1839delGT	p.Cys613PhefsTer30	p.C613Ffs*30	ENST00000281708	NM_033632.3	613	tGT/t																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175215	+	frameshift_variant	Frame_Shift_Del	DEL	AAAA	AAAA	-			P-0018218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	50	116	0	ENST00000257430.4:c.3921_3924delAAAA	p.Ile1307MetfsTer13	p.I1307Mfs*13	ENST00000257430	NM_000038.5	1307	atAAAA/at																																																																														
AR	367	MSKCC	GRCh37	X	66765478	66765478	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	68	307	0	ENST00000374690.3:c.490T>A	p.Leu164Met	p.L164M	ENST00000374690	NM_000044.3	164	Ttg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0018345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	596	873	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699360	47699360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	207	410	2	ENST00000347630.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000347630	NM_001007230.1	50	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	131	329	1	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	80	348	2	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711910	89711925	+	frameshift_variant	Frame_Shift_Del	DEL	TTATTATAGCTACCTG	TTATTATAGCTACCTG	-			P-0018345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	47	420	0	ENST00000371953.3:c.531_546del	p.Tyr177Ter	p.Y177*	ENST00000371953	NM_000314.4	176	taTTATTATAGCTACCTG/ta																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497527	125497527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	46	223	2	ENST00000428830.2:c.91A>G	p.Thr31Ala	p.T31A	ENST00000428830	NM_001114121.2	31	Act/Gct																																																																														
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	108	564	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313454	30313454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	147	580	1	ENST00000262643.3:c.1054G>A	p.Val352Ile	p.V352I	ENST00000262643	NM_001238.2	352	Gtc/Atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0018442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	197	130	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	297	587	2	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1976665	1976665	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	145	436	0	ENST00000382891.5:c.3448A>G	p.Thr1150Ala	p.T1150A	ENST00000382891	NM_133335.3	1150	Acc/Gcc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270110	66270110	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	168	319	0	ENST00000273854.3:c.1772G>C	p.Gly591Ala	p.G591A	ENST00000273854	NM_004439.5	591	gGc/gCc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0018484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	195	157	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	595	382	0	ENST00000269305.4:c.737T>C	p.Met246Thr	p.M246T	ENST00000269305	NM_001126112.2	246	aTg/aCg																																																																														
MED12	9968	MSKCC	GRCh37	X	70341452	70341452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	575	415	0	ENST00000374080.3:c.887G>A	p.Arg296Gln	p.R296Q	ENST00000374080		296	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0018716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	198	570	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	358	319	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	314	173	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	183	69	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag																																																																														
MPL	4352	MSKCC	GRCh37	1	43805740	43805740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	82	342	0	ENST00000372470.3:c.796G>A	p.Gly266Ser	p.G266S	ENST00000372470	NM_005373.2	266	Ggt/Agt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690829	89690829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	36	273	0	ENST00000371953.3:c.236C>G	p.Ala79Gly	p.A79G	ENST00000371953	NM_000314.4	79	gCc/gGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584756	48584757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	488	221	1	ENST00000342988.3:c.836dup	p.Asn279LysfsTer29	p.N279Kfs*29	ENST00000342988	NM_005359.5	278	-/A																																																																														
APC	324	MSKCC	GRCh37	5	112174391	112174391	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	71	137	0	ENST00000257430.4:c.3100G>T	p.Glu1034Ter	p.E1034*	ENST00000257430	NM_000038.5	1034	Gag/Tag																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176105677	176105677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	127	201	0	ENST00000367669.3:c.838G>A	p.Glu280Lys	p.E280K	ENST00000367669	NM_022457.5	280	Gaa/Aaa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64574673	64574677	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGC	AGAGC	-			P-0019367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	308	256	1	ENST00000337652.1:c.813_817del	p.Leu272Ter	p.L272*	ENST00000337652	NM_130803.2	271	ctGCTCTat/ctat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444752	49444752	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1240	257	447	1	ENST00000301067.7:c.2714A>T	p.Glu905Val	p.E905V	ENST00000301067	NM_003482.3	905	gAa/gTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123164914	123164914	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	72	184	0	ENST00000218089.9:c.227A>T	p.Gln76Leu	p.Q76L	ENST00000218089	NM_001042749.1	76	cAg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	251	228	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	124	307	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
AKT1	207	MSKCC	GRCh37	14	105239419	105239419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	331	230	0	ENST00000349310.3:c.968A>G	p.Asp323Gly	p.D323G	ENST00000349310	NM_001014432.1	323	gAc/gGc																																																																														
TET1	80312	MSKCC	GRCh37	10	70446294	70446294	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144991411		P-0020032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	250	371	2	ENST00000373644.4:c.5234C>T	p.Thr1745Met	p.T1745M	ENST00000373644	NM_030625.2	1745	aCg/aTg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162737061	162737061	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	460	276	0	ENST00000367921.3:c.1205T>C	p.Ile402Thr	p.I402T	ENST00000367921	NM_006182.2	402	aTt/aCt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714135	43714135	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	140	363	0	ENST00000382044.4:c.4018G>T	p.Gly1340Ter	p.G1340*	ENST00000382044	NM_001141980.1	1340	Gga/Tga																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020563	14020567	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAA	GGAAA	TTC			P-0020032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	142	240	1	ENST00000311895.7:c.534_538delinsTTC	p.Glu179SerfsTer31	p.E179Sfs*31	ENST00000311895	NM_005236.2	178	gtGGAAAga/gtTTCga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101402	27101402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	154	313	0	ENST00000324856.7:c.4689del	p.Met1564Ter	p.M1564*	ENST00000324856	NM_006015.4	1562	Ccc/cc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	13	132	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	57	396	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	126	405	3	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	31	176	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	24	81	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	12	101	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
NF1	4763	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	13	101	0	ENST00000358273.4:c.6852_6855delTTAC	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039347	47039347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	56	622	1	ENST00000329236.7:c.739G>A	p.Ala247Thr	p.A247T	ENST00000329236	NM_001204466.1	247	Gcg/Acg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	13	125	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	63	276	0	ENST00000357368.4:c.1821delC	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37038192	37038192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	26	77	0	ENST00000231790.2:c.199G>A	p.Gly67Arg	p.G67R	ENST00000231790	NM_000249.3	67	Ggg/Agg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	87	430	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53230892	53230892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	122	481	1	ENST00000375401.3:c.1901G>A	p.Arg634His	p.R634H	ENST00000375401	NM_004187.3	634	cGc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	24	159	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	39	186	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	12	146	2	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	55	624	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111131	193111131	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	29	122	0	ENST00000367435.3:c.664C>T	p.Arg222Ter	p.R222*	ENST00000367435	NM_024529.4	222	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	39	182	2	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71101751	71101751	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	18	79	0	ENST00000318789.4:c.447del	p.Lys149AsnfsTer57	p.K149Nfs*57	ENST00000318789	NM_032682.5	149	aaA/aa																																																																														
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	62	721	3	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																														
EP300	2033	MSKCC	GRCh37	22	41564823	41564823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	83	188	0	ENST00000263253.7:c.4124G>T	p.Gly1375Val	p.G1375V	ENST00000263253	NM_001429.3	1375	gGc/gTc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137784	64137784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	266	781	0	ENST00000334205.4:c.1885C>T	p.Arg629Cys	p.R629C	ENST00000334205	NM_003942.2	629	Cgc/Tgc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508239	106508239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	101	189	0	ENST00000359195.3:c.233C>T	p.Ala78Val	p.A78V	ENST00000359195	NM_002649.2	78	gCg/gTg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128029004	128029004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	64	224	2	ENST00000285398.2:c.1853C>T	p.Pro618Leu	p.P618L	ENST00000285398	NM_000122.1	618	cCg/cTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	60	475	2	ENST00000334205.4:c.2287delC	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755426	39755427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	26	247	1	ENST00000288319.7:c.1338dup	p.Ala447CysfsTer19	p.A447Cfs*19	ENST00000288319	NM_182918.3	446	-/T																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098396	11098396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138097741		P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	82	666	0	ENST00000344626.4:c.914C>T	p.Pro305Leu	p.P305L	ENST00000344626	NM_003072.3	305	cCg/cTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905324	50905324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	55	717	2	ENST00000440232.2:c.537del	p.Arg180GlyfsTer3	p.R180Gfs*3	ENST00000440232	NM_002691.3	178	Ggg/gg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910273	50910273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	194	633	3	ENST00000440232.2:c.1528G>A	p.Val510Met	p.V510M	ENST00000440232	NM_002691.3	510	Gtg/Atg																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	62	231	0	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647685	2647685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	122	378	2	ENST00000342085.4:c.1588G>A	p.Gly530Arg	p.G530R	ENST00000342085	NM_002613.4	530	Ggg/Agg																																																																														
CCND1	595	MSKCC	GRCh37	11	69466022	69466022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	64	583	0	ENST00000227507.2:c.860C>A	p.Pro287His	p.P287H	ENST00000227507	NM_053056.2	287	cCc/cAc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784064	120784064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	231	679	0	ENST00000257552.2:c.921C>A	p.Phe307Leu	p.F307L	ENST00000257552	NM_002442.3	307	ttC/ttA																																																																														
INSR	3643	MSKCC	GRCh37	19	7120689	7120689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	65	388	0	ENST00000302850.5:c.3601C>T	p.Arg1201Trp	p.R1201W	ENST00000302850	NM_000208.2	1201	Cgg/Tgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944132	71944134	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	93	365	0	ENST00000298229.2:c.1967_1969delCCT	p.Ser656del	p.S656del	ENST00000298229	NM_001567.3	655	atCTCc/atc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644874	67644874	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	52	208	0	ENST00000264010.4:c.143del	p.Gly48ValfsTer14	p.G48Vfs*14	ENST00000264010	NM_006565.3	47	Ggg/gg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265285	46265285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	13	96	0	ENST00000371998.3:c.2155G>A	p.Gly719Arg	p.G719R	ENST00000371998		719	Gga/Aga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	79	452	0	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980265	201980265	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	29	201	0	ENST00000359651.3:c.1A>G	p.Met1?	p.M1?	ENST00000359651		1	Atg/Gtg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63816997	63816997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	21	85	0	ENST00000279873.7:c.968C>T	p.Ala323Val	p.A323V	ENST00000279873	NM_032199.2	323	gCc/gTc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845594	63845594	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	15	98	0	ENST00000279873.7:c.1335del	p.Lys445AsnfsTer34	p.K445Nfs*34	ENST00000279873	NM_032199.2	445	Aaa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717719	89717720	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	43	123	0	ENST00000371953.3:c.750_751del	p.Cys250TrpfsTer2	p.C250Wfs*2	ENST00000371953	NM_000314.4	248	ccTGtg/cctg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs768101780		P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	78	438	4	ENST00000543371.1:c.1485del	p.Ser496ProfsTer5	p.S496Pfs*5	ENST00000543371	NM_001198531.1	494	Ccc/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946429	71946429	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	147	566	0	ENST00000298229.2:c.2593A>G	p.Asn865Asp	p.N865D	ENST00000298229	NM_001567.3	865	Aat/Gat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375057	118375057	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	10	127	0	ENST00000534358.1:c.8454del	p.Ser2819ProfsTer14	p.S2819Pfs*14	ENST00000534358	NM_005933.3	2817	aCc/ac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444378	49444378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	39	370	0	ENST00000301067.7:c.2993del	p.Pro998LeufsTer2	p.P998Lfs*2	ENST00000301067	NM_003482.3	998	cCt/ct																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518988	103518988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	20	264	0	ENST00000355739.4:c.2326C>A	p.Leu776Met	p.L776M	ENST00000355739	NM_000123.3	776	Ctg/Atg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060955	38060955	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	34	241	0	ENST00000250448.2:c.1034del	p.Gly345AlafsTer5	p.G345Afs*5	ENST00000250448	NM_004496.3	345	gGc/gc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456306	99456306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	72	195	0	ENST00000268035.6:c.1623G>T	p.Gln541His	p.Q541H	ENST00000268035	NM_000875.3	541	caG/caT																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500476	99500476	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	147	474	0	ENST00000268035.6:c.3913del	p.Leu1305TrpfsTer45	p.L1305Wfs*45	ENST00000268035	NM_000875.3	1303	gtC/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655410	67655410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	17	235	0	ENST00000264010.4:c.1273C>T	p.His425Tyr	p.H425Y	ENST00000264010	NM_006565.3	425	Cac/Tac																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942085	81942085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	65	277	2	ENST00000359376.3:c.1622C>T	p.Thr541Met	p.T541M	ENST00000359376	NM_002661.3	541	aCg/aTg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217432	7217432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	206	58	0	ENST00000380728.2:c.364G>A	p.Val122Ile	p.V122I	ENST00000380728		122	Gtt/Att																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980507	7980507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	234	49	0	ENST00000319144.4:c.1076G>A	p.Ser359Asn	p.S359N	ENST00000319144	NM_001139.2	359	aGc/aAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78857633	78857633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	197	533	0	ENST00000306801.3:c.1703A>G	p.Asp568Gly	p.D568G	ENST00000306801	NM_020761.2	568	gAc/gGc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191174	2191174	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	52	530	0	ENST00000398665.3:c.428T>C	p.Leu143Pro	p.L143P	ENST00000398665	NM_032482.2	143	cTg/cCg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210524	5210524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	30	423	0	ENST00000357368.4:c.5443A>G	p.Met1815Val	p.M1815V	ENST00000357368	NM_002850.3	1815	Atg/Gtg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950388	17950388	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	45	545	1	ENST00000458235.1:c.1339del	p.His447ThrfsTer18	p.H447Tfs*18	ENST00000458235	NM_000215.3	447	Cac/ac																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273026	18273026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	232	596	4	ENST00000222254.8:c.921delC	p.Lys308ArgfsTer33	p.K308Rfs*33	ENST00000222254	NM_005027.3	306	Ccc/cc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794474	42794474	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	87	675	0	ENST00000575354.2:c.1555del	p.Asp519IlefsTer4	p.D519Ifs*4	ENST00000575354	NM_015125.3	518	ccG/cc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212615400	212615400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	41	156	1	ENST00000342788.4:c.586C>A	p.Arg196Ser	p.R196S	ENST00000342788	NM_005235.2	196	Cgt/Agt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164566	36164566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	157	377	0	ENST00000300305.3:c.1309A>G	p.Thr437Ala	p.T437A	ENST00000300305		437	Acc/Gcc																																																																														
EP300	2033	MSKCC	GRCh37	22	41537109	41537110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	41	128	0	ENST00000263253.7:c.1941dup	p.Arg648ThrfsTer27	p.R648Tfs*27	ENST00000263253	NM_001429.3	646	gaa/gAaa																																																																														
PPARG	5468	MSKCC	GRCh37	3	12393112	12393112	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	55	186	0	ENST00000287820.6:c.21T>A	p.Asp7Glu	p.D7E	ENST00000287820	NM_015869.4	7	gaT/gaA																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403497	138403497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	57	179	0	ENST00000289153.2:c.2285T>C	p.Leu762Pro	p.L762P	ENST00000289153	NM_006219.2	762	cTg/cCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518017	187518017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	11	167	0	ENST00000441802.2:c.12677C>T	p.Ala4226Val	p.A4226V	ENST00000441802	NM_005245.3	4226	gCt/gTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540069	187540069	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	36	151	0	ENST00000441802.2:c.7671A>T	p.Glu2557Asp	p.E2557D	ENST00000441802	NM_005245.3	2557	gaA/gaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176700715	176700715	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	37	143	0	ENST00000439151.2:c.5556del	p.Glu1853SerfsTer2	p.E1853Sfs*2	ENST00000439151	NM_022455.4	1851	cAa/ca																																																																														
SESN1	27244	MSKCC	GRCh37	6	109311861	109311861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	14	181	0	ENST00000436639.2:c.1411A>G	p.Met471Val	p.M471V	ENST00000436639	NM_014454.2	471	Atg/Gtg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100246	157100246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	12	79	0	ENST00000346085.5:c.1183G>A	p.Ala395Thr	p.A395T	ENST00000346085	NM_020732.3	395	Gcc/Acc																																																																														
HGF	3082	MSKCC	GRCh37	7	81335658	81335658	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	21	139	0	ENST00000222390.5:c.1702T>C	p.Ser568Pro	p.S568P	ENST00000222390	NM_000601.4	568	Tcc/Ccc																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38178604	38178606	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	44	190	0	ENST00000317025.8:c.1793_1795del	p.Lys598del	p.K598del	ENST00000317025	NM_023034.1	598	aAGAtc/atc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69000005	69000005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	34	219	0	ENST00000288368.4:c.2074C>T	p.Arg692Trp	p.R692W	ENST00000288368	NM_024870.2	692	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	41	348	0	ENST00000304494.5:c.149A>C	p.Gln50Pro	p.Q50P	ENST00000304494	NM_000077.4	50	cAg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	41	348	0	ENST00000304494.5:c.149A>C	p.Gln50Pro	p.Q50P	ENST00000304494	NM_000077.4	50	cAg/cCg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98240399	98240399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	99	300	0	ENST00000331920.6:c.1285G>A	p.Asp429Asn	p.D429N	ENST00000331920	NM_000264.3	429	Gac/Aac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969405	44969405	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	67	176	0	ENST00000377967.4:c.4087C>T	p.Arg1363Ter	p.R1363*	ENST00000377967	NM_021140.2	1363	Cga/Tga																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518569	69518569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	47	450	5	ENST00000294312.3:c.76G>A	p.Ala26Thr	p.A26T	ENST00000294312	NM_005117.2	26	Gcc/Acc																																																																														
STK40	83931	MSKCC	GRCh37	1	36824388	36824388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	58	480	0	ENST00000373129.3:c.148G>C	p.Val50Leu	p.V50L	ENST00000373129	NM_032017.1	50	Gtg/Ctg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983132	201983133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	104	376	0	ENST00000359651.3:c.983dup	p.Leu329AlafsTer142	p.L329Afs*142	ENST00000359651		327	-/A																																																																														
TET1	80312	MSKCC	GRCh37	10	70404752	70404752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	45	216	2	ENST00000373644.4:c.2266G>A	p.Val756Ile	p.V756I	ENST00000373644	NM_030625.2	756	Gta/Ata																																																																														
PTEN	5728	MSKCC	GRCh37	10	89712002	89712002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	15	94	0	ENST00000371953.3:c.620G>A	p.Ser207Asn	p.S207N	ENST00000371953	NM_000314.4	207	aGt/aAt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476310	88476310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	92	438	0	ENST00000360948.2:c.1822G>A	p.Gly608Ser	p.G608S	ENST00000360948	NM_001012338.2	608	Ggc/Agc																																																																														
CDH1	999	MSKCC	GRCh37	16	68846036	68846036	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	139	402	0	ENST00000261769.5:c.1009-2A>G		p.X337_splice	ENST00000261769	NM_004360.3	337																																																																															
XPO1	7514	MSKCC	GRCh37	2	61708417	61709439	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTGCAAATCAAAACACAATGATTAAATAATGATTTATTTTTCCCCCGAGACAGAGTATTGCTCTGTCACCAGGCTGGAGTACAGTGGCATGATCTCTGCTCACTGTAATCTCTGCCTCCCGGGTTCAAGACATTCTCCTGCCTCAGCGTCCCAATAATGTTTTTTTTTTTTAATCAAGAATTTTTTTTTAATTTTTGAGACAAAGTTTTGCTCGTTTACCAGGTTGGAGTACAATCGCACAATCGCGGCTCACCGCAACCTCTGAAGCTATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCGGCTAATTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCAAATCTCAAACTCCTGACCTCAGGTAATCTGCCCGCCTAGGCCTCCCAAAGTGCTTGGATTACAGGCGTTTGCCACCGTGCCCAGCCTTTTTATTTTTTGAGACAGTCTTGCTCTGTCACCCACACTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAGTTCTCCCCCTCAGCCTCCCAAGTAGCTGGGATTTCAGGCACCCACCACCATGCCCAACTAATTTTTTGTATTTTTAGTAGAAACGGGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACTCCTGACCTTGTGATTCACCCACCTCAGCCTCCCAAAGTGTTGGGATTACAGTCATGAGCCACCGTGCGTGGCCTTTTTTTTTTTTTTTTTTTTTTTGCTTTTTTAAAGAGGCAGGGTCTCACTCTATCACCCAGGCTGGTGTACAGTGGTGCGATCATAGCTCACTGCAGTCTTAAACTCCAGGATGCAAACAACCCTCTCGCCTCAGCCTCTCCAACAGCTGGTCCTACAGATGCATACCACTTCTGACTACTTTTTTTTTTGTAGAGACGGGATCTTGTTTTGTTGTCTAGGTTGGTCTCCAACTTTTGGGCCCAAGCAATCCTCCCACCTTAGGCTTCCC	CTGCAAATCAAAACACAATGATTAAATAATGATTTATTTTTCCCCCGAGACAGAGTATTGCTCTGTCACCAGGCTGGAGTACAGTGGCATGATCTCTGCTCACTGTAATCTCTGCCTCCCGGGTTCAAGACATTCTCCTGCCTCAGCGTCCCAATAATGTTTTTTTTTTTTAATCAAGAATTTTTTTTTAATTTTTGAGACAAAGTTTTGCTCGTTTACCAGGTTGGAGTACAATCGCACAATCGCGGCTCACCGCAACCTCTGAAGCTATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCGGCTAATTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCAAATCTCAAACTCCTGACCTCAGGTAATCTGCCCGCCTAGGCCTCCCAAAGTGCTTGGATTACAGGCGTTTGCCACCGTGCCCAGCCTTTTTATTTTTTGAGACAGTCTTGCTCTGTCACCCACACTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAGTTCTCCCCCTCAGCCTCCCAAGTAGCTGGGATTTCAGGCACCCACCACCATGCCCAACTAATTTTTTGTATTTTTAGTAGAAACGGGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACTCCTGACCTTGTGATTCACCCACCTCAGCCTCCCAAAGTGTTGGGATTACAGTCATGAGCCACCGTGCGTGGCCTTTTTTTTTTTTTTTTTTTTTTTGCTTTTTTAAAGAGGCAGGGTCTCACTCTATCACCCAGGCTGGTGTACAGTGGTGCGATCATAGCTCACTGCAGTCTTAAACTCCAGGATGCAAACAACCCTCTCGCCTCAGCCTCTCCAACAGCTGGTCCTACAGATGCATACCACTTCTGACTACTTTTTTTTTTGTAGAGACGGGATCTTGTTTTGTTGTCTAGGTTGGTCTCCAACTTTTGGGCCCAAGCAATCCTCCCACCTTAGGCTTCCC	-			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	183	38	0	ENST00000401558.2:c.2972+76_2973-1del		p.X991_splice	ENST00000401558	NM_003400.3	991																																																																															
XPO1	7514	MSKCC	GRCh37	2	61709673	61710089	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTGTTGATAAGAAGAAAATTATTAACTCCAAAATGTAATATAACTATAGATCTTAGCGTTTTTTTTTGTTTTGTTTTTTTTTTTTAGACGGAGTCTCGCTCTGTCACCCAAGCTGGAATGCCGTGGCGCAATCTTAGTTCACTGCAACCTCTGCCTCCTCGGTCCAAGCCATTCTCCTGCCTCAGCCTCCCGAATAGGTGGGATTGCAATCACATGCCACCATGCCCAGTATTTTTATTGTATCTTTTATTTTTTTATGGTATTTTTAGTACAGACAGTTTCACCATGGTGGCCAGGCTGTTCTCGAACTCCTGACCTCATAATCTCCCCGCCTCGACCTCCCAAAGTGCTGGGATTATAGGCGTGAGGCCCTGTGCCCAGCTGGCACTTAACATTTAAATCGTATTAAATTCTT	ACCTGTTGATAAGAAGAAAATTATTAACTCCAAAATGTAATATAACTATAGATCTTAGCGTTTTTTTTTGTTTTGTTTTTTTTTTTTAGACGGAGTCTCGCTCTGTCACCCAAGCTGGAATGCCGTGGCGCAATCTTAGTTCACTGCAACCTCTGCCTCCTCGGTCCAAGCCATTCTCCTGCCTCAGCCTCCCGAATAGGTGGGATTGCAATCACATGCCACCATGCCCAGTATTTTTATTGTATCTTTTATTTTTTTATGGTATTTTTAGTACAGACAGTTTCACCATGGTGGCCAGGCTGTTCTCGAACTCCTGACCTCATAATCTCCCCGCCTCGACCTCCCAAAGTGCTGGGATTATAGGCGTGAGGCCCTGTGCCCAGCTGGCACTTAACATTTAAATCGTATTAAATTCTT	-			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	22	103	0	ENST00000401558.2:c.2812+3_2814del		p.X938_splice	ENST00000401558	NM_003400.3	938																																																																															
XPO1	7514	MSKCC	GRCh37	2	61710226	61711070	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTAAAAGACATAGAATACCAATGGAAAGTTACTACAGACTGACAGCACTCATGATAGTATTTAGCTCTTATCAAAGTATTCTGAATCTAACCCTGTTCTCCCTTTTTTTTGGGATGATGACTAATAATTACTTGCATAAGGTTTCTTAAATTAATAATGGAATACAACTATATCCAATGCTGGCTTACTTATAAATTATAATAAGTTGTGTGAGAGCTAAACTGTGAAGATGTAAAGGCATAAAGATCATATAATGGACTTTGGGGACTTGTGGGGAAGGGCAGGAGTGGGTGAGGGATAAGACTACACATAAGGTGGAGTTCATACACATGAGGGATAAGACTACACATAAAGTAGAGTTCATACTGCTCACATGACAGGTGCACCAAAATCTCAGAAATCACCACTGAAGAACTTATTCATGTAACCAAAAACCACCTGTTCCCCAAAAACTATTGAAATAAAAAAAGAACCTCATGAATATTTTTTAAAAGCCTATGGGAAAAAAATTACAATCTAAGTTATGACTATTACCACCCTTTCACCATTTCTGAAAGCTCAGCTGATTCTATATGAACTTCTACAACATCACTACCCAGTAGAACTTTGTATTACGCAAACCAATTATTACTAGGCCGCTCTCCCCATAACTCAATTCTGCCTATGGACTCACTTGGAGTGGAGTGGAACAGTTGATTAAACTGCTTATAGGATTTTCTCAGATGTTCATATATGTAATTCACACACTCAAAACTCTGAACAAGTAATACCTTCCTATGTACAATTAACTATATTTGTATTTTTGGATTGGCAGGCAAATGAATAAAAGAACATCTTTTATTTA	CCTAAAAGACATAGAATACCAATGGAAAGTTACTACAGACTGACAGCACTCATGATAGTATTTAGCTCTTATCAAAGTATTCTGAATCTAACCCTGTTCTCCCTTTTTTTTGGGATGATGACTAATAATTACTTGCATAAGGTTTCTTAAATTAATAATGGAATACAACTATATCCAATGCTGGCTTACTTATAAATTATAATAAGTTGTGTGAGAGCTAAACTGTGAAGATGTAAAGGCATAAAGATCATATAATGGACTTTGGGGACTTGTGGGGAAGGGCAGGAGTGGGTGAGGGATAAGACTACACATAAGGTGGAGTTCATACACATGAGGGATAAGACTACACATAAAGTAGAGTTCATACTGCTCACATGACAGGTGCACCAAAATCTCAGAAATCACCACTGAAGAACTTATTCATGTAACCAAAAACCACCTGTTCCCCAAAAACTATTGAAATAAAAAAAGAACCTCATGAATATTTTTTAAAAGCCTATGGGAAAAAAATTACAATCTAAGTTATGACTATTACCACCCTTTCACCATTTCTGAAAGCTCAGCTGATTCTATATGAACTTCTACAACATCACTACCCAGTAGAACTTTGTATTACGCAAACCAATTATTACTAGGCCGCTCTCCCCATAACTCAATTCTGCCTATGGACTCACTTGGAGTGGAGTGGAACAGTTGATTAAACTGCTTATAGGATTTTCTCAGATGTTCATATATGTAATTCACACACTCAAAACTCTGAACAAGTAATACCTTCCTATGTACAATTAACTATATTTGTATTTTTGGATTGGCAGGCAAATGAATAAAAGAACATCTTTTATTTA	-			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	46	189	0	ENST00000401558.2:c.2677+2_2678del		p.X893_splice	ENST00000401558	NM_003400.3	893																																																																															
XPO1	7514	MSKCC	GRCh37	2	61713087	61713087	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	30	138	0	ENST00000401558.2:c.2324A>G	p.Asn775Ser	p.N775S	ENST00000401558	NM_003400.3	775	aAt/aGt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715405	61715720	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTACAAAACAGAATCAAATGGAATCTAATTTTACCACTAAACTTATACAGTGGTACTCAGGTGTACATTAGATGCAATTCCATTTTACCATTAAAAAGTTTAAAGCCAAAAGTTCACAAAATTTATTGGGAAAATAAGCTTTAAGACTAATTTTAAAAGGGAAAGGTACACTTAACTGTTTTAAATATGTCTAGGGTCATTTGGGAAATGGGAGGTCTGATTTAAATCTGTAAAAAACATCAAATGTTTGACTTAAGGCAGTAGAAGAGAAGTGGTTTGTTTATACTGCATTGTGTAAGAAATCAGAATCACCT	ACCTACAAAACAGAATCAAATGGAATCTAATTTTACCACTAAACTTATACAGTGGTACTCAGGTGTACATTAGATGCAATTCCATTTTACCATTAAAAAGTTTAAAGCCAAAAGTTCACAAAATTTATTGGGAAAATAAGCTTTAAGACTAATTTTAAAAGGGAAAGGTACACTTAACTGTTTTAAATATGTCTAGGGTCATTTGGGAAATGGGAGGTCTGATTTAAATCTGTAAAAAACATCAAATGTTTGACTTAAGGCAGTAGAAGAGAAGTGGTTTGTTTATACTGCATTGTGTAAGAAATCAGAATCACCT	-			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	50	182	0	ENST00000401558.2:c.2206+3_2208del		p.X736_splice	ENST00000401558	NM_003400.3	736																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719334	61719459	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	CTAACAAGACAAAAATATTCATTTATTTTGTCCTGGACTCCATCATGGGTCTCTAACAAGACAAAAACATTCATTTATTTTCTTCAATAAAAATAAAAGCAAAATATAGTAAAGAAAGAGATTTAC	CTAACAAGACAAAAATATTCATTTATTTTGTCCTGGACTCCATCATGGGTCTCTAACAAGACAAAAACATTCATTTATTTTCTTCAATAAAAATAAAAGCAAAATATAGTAAAGAAAGAGATTTAC	-			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	33	172	0	ENST00000401558.2:c.1723+1_1724-1del		p.X575_splice	ENST00000401558	NM_003400.3	575																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719616	61719700	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGTAAATAAGACAAATTTGTATTATTTATTGTAACAACATAATACTTATTTAGCAATTCTAATTCATACCTATCCCTTGCATA	CCTGTAAATAAGACAAATTTGTATTATTTATTGTAACAACATAATACTTATTTAGCAATTCTAATTCATACCTATCCCTTGCATA	-			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	53	163	0	ENST00000401558.2:c.1566+2_1567del		p.X522_splice	ENST00000401558	NM_003400.3	522																																																																															
XPO1	7514	MSKCC	GRCh37	2	61719884	61720049	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	CTACAAAGAAAAACATGGTTTCAAATGCAAATAATGAGCAGAATTTTATTGATGAGTAACAATACATTTAGAAAATATTTAGAAACTACAAGTACATTTCCTAAAATGTATTTCCACCCCAGAATAGATTTATAAAGGTAAAGATTAACAGTATTTATTAACTTAC	CTACAAAGAAAAACATGGTTTCAAATGCAAATAATGAGCAGAATTTTATTGATGAGTAACAATACATTTAGAAAATATTTAGAAACTACAAGTACATTTCCTAAAATGTATTTCCACCCCAGAATAGATTTATAAAGGTAAAGATTAACAGTATTTATTAACTTAC	-			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	49	195	0	ENST00000401558.2:c.1384+1_1385-1del		p.X462_splice	ENST00000401558	NM_003400.3	462																																																																															
XPO1	7514	MSKCC	GRCh37	2	61720187	61721026	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTATACTCAACAATATATCAATCAAGAAAAAAATCGTTAGATCACTGAAATCATTAGTGTAGAAGCTTAGTTAAAAACAAACAAAACCAAAAAAACCACAAGCCAGCCATGTGTAGGGATTCATGCCTATAATTCCAACTATTCCGGAGGGCCGAGGCAAAAAGAACTGTTGTGGCCAGGAATTTGAGAGCAGCTTGAGCAACACAAAATGACACCCAATCTCTAAAACAATAAAAATACTGGGGCTTAAAGCACAACAGAAAAAACTATGTAAATATAAATGAAGTAAAACTAAAAAATTTAAAATTTGCTAGGCATGGTGGTGTGTGCCTGCAACCAATTACTTGGGAGGCTGACACAAGAGAATTGCTTTAGTCTAGGAGTTCAAGATTGTAGTGAGCTATGACCACGCCACTGCACTCCAACCTGAGCCACAGAGCAAGACCCTGTCTCCAAAAGAAAAAATTTTTTTTCACTGTAATTCTACAAAAATGGCTTTATAATTATTTAAGTGTGTTTTAATGTGATTTTTTTAACCAACTTCTGTTACAGGAGTTTCCTGTGTCTCATTCCTAGACTCTGGTTTAGTAGATTGGCAGGTGGCCAATGAATTTGCCTAACGAAATCACAACCAATGTTGATACTGAGAGAAGGACCACACTCTTGAGAATCAAGGTTCTAGACTCAACTCCTTTCATGTTCTAGTTTTCCACACTCATGGAGAAGTTGTTGGGTTCTCTTTTTATAGCTAATTTATTTACACAGATTAGAAGTATTTGGATTCAGACCTCAAAACCACAGTATGCAACAGGAAGAACACTCAACCAACCGCTCTGTT	ACCTATACTCAACAATATATCAATCAAGAAAAAAATCGTTAGATCACTGAAATCATTAGTGTAGAAGCTTAGTTAAAAACAAACAAAACCAAAAAAACCACAAGCCAGCCATGTGTAGGGATTCATGCCTATAATTCCAACTATTCCGGAGGGCCGAGGCAAAAAGAACTGTTGTGGCCAGGAATTTGAGAGCAGCTTGAGCAACACAAAATGACACCCAATCTCTAAAACAATAAAAATACTGGGGCTTAAAGCACAACAGAAAAAACTATGTAAATATAAATGAAGTAAAACTAAAAAATTTAAAATTTGCTAGGCATGGTGGTGTGTGCCTGCAACCAATTACTTGGGAGGCTGACACAAGAGAATTGCTTTAGTCTAGGAGTTCAAGATTGTAGTGAGCTATGACCACGCCACTGCACTCCAACCTGAGCCACAGAGCAAGACCCTGTCTCCAAAAGAAAAAATTTTTTTTCACTGTAATTCTACAAAAATGGCTTTATAATTATTTAAGTGTGTTTTAATGTGATTTTTTTAACCAACTTCTGTTACAGGAGTTTCCTGTGTCTCATTCCTAGACTCTGGTTTAGTAGATTGGCAGGTGGCCAATGAATTTGCCTAACGAAATCACAACCAATGTTGATACTGAGAGAAGGACCACACTCTTGAGAATCAAGGTTCTAGACTCAACTCCTTTCATGTTCTAGTTTTCCACACTCATGGAGAAGTTGTTGGGTTCTCTTTTTATAGCTAATTTATTTACACAGATTAGAAGTATTTGGATTCAGACCTCAAAACCACAGTATGCAACAGGAAGAACACTCAACCAACCGCTCTGTT	-			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	55	206	0	ENST00000401558.2:c.1245+3_1247del		p.X415_splice	ENST00000401558	NM_003400.3	415																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30729932	30729932	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	41	283	1	ENST00000359013.4:c.1528G>T	p.Glu510Ter	p.E510*	ENST00000359013	NM_001024847.2	510	Gaa/Taa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985587	2985587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	30	190	0	ENST00000396946.4:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000396946	NM_032415.4	75	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	13	103	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0020805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	64	160	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0020805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	106	81	0	ENST00000304494.5:c.151-2A>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0020805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	106	81	0	ENST00000304494.5:c.151-2A>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0020805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	106	81	0	ENST00000304494.5:c.151-2A>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0021499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	166	236	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023151	27023179	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	-			P-0021499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	163	98	0	ENST00000324856.7:c.267_295del	p.Ser90ProfsTer11	p.S90Pfs*11	ENST00000324856	NM_006015.4	86	gGCGGAGCCGGCAGCGGCGGCGGGCCCGGC/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023440	27023440	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	370	265	1	ENST00000324856.7:c.546del	p.Ala183ArgfsTer49	p.A183Rfs*49	ENST00000324856	NM_006015.4	182	gcA/gc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779728	3779728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	306	376	0	ENST00000262367.5:c.5320C>T	p.Arg1774Cys	p.R1774C	ENST00000262367	NM_004380.2	1774	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	142	307	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	226	383	2	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	192	88	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256145	16256145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	56	347	0	ENST00000375759.3:c.3410G>A	p.Arg1137His	p.R1137H	ENST00000375759	NM_015001.2	1137	cGt/cAt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929077	44929077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	149	151	2	ENST00000377967.4:c.2177C>T	p.Thr726Met	p.T726M	ENST00000377967	NM_021140.2	726	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431257	49431267	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCTGGGCAG	GGCCTGGGCAG	-			P-0021991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	98	242	0	ENST00000301067.7:c.9872_9882delCTGCCCAGGCC	p.Pro3291HisfsTer6	p.P3291Hfs*6	ENST00000301067	NM_003482.3	3291	cCTGCCCAGGCC/c																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468397	89468398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1467832547		P-0021991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	96	184	0	ENST00000336596.2:c.1938dup	p.Glu647ArgfsTer7	p.E647Rfs*7	ENST00000336596	NM_005233.5	644	tca/tcAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911546	114911546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	108	315	0	ENST00000543371.1:c.1064A>G	p.Asn355Ser	p.N355S	ENST00000543371	NM_001198531.1	355	aAt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	105	154	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579372	7579372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	176	595	0	ENST00000269305.4:c.315del	p.Ser106AlafsTer17	p.S106Afs*17	ENST00000269305	NM_001126112.2	105	ggC/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	37	137	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0022382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	62	133	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936564	49936564	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199940178		P-0022382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	157	591	3	ENST00000296474.3:c.1363C>T	p.Arg455Cys	p.R455C	ENST00000296474	NM_002447.2	455	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0022382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	353	507	1	ENST00000269305.4:c.994-2A>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114912094	114912095	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GC	GC	TT			P-0022382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	34	283	0	ENST00000543371.1:c.1164_1165delinsTT	p.Trp388_His389delinsCysTyr	p.W388_H389delinsCY	ENST00000543371	NM_001198531.1	388	tgGCat/tgTTat																																																																														
TERT	7015	MSKCC	GRCh37	5	1280288	1280288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	104	800	0	ENST00000310581.5:c.1935C>A	p.Phe645Leu	p.F645L	ENST00000310581	NM_198253.2	645	ttC/ttA																																																																														
HGF	3082	MSKCC	GRCh37	7	81336634	81336634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	60	92	0	ENST00000222390.5:c.1588C>A	p.Leu530Ile	p.L530I	ENST00000222390	NM_000601.4	530	Ctt/Att																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	59	130	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	288	1161	3	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866393	37866393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	195	734	0	ENST00000269571.5:c.698C>T	p.Thr233Ile	p.T233I	ENST00000269571		233	aCt/aTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245317	46245318	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0022517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	125	321	0	ENST00000334344.6:c.3411_3412del	p.Gly1139SerfsTer20	p.G1139Sfs*20	ENST00000334344	NM_152641.2	1137	tcAGgg/tcgg																																																																														
ATR	545	MSKCC	GRCh37	3	142281824	142281825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCAGGACTCTT			P-0022517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	71	142	0	ENST00000350721.4:c.409_419dup	p.Ile141ArgfsTer28	p.I141Rfs*28	ENST00000350721	NM_001184.3	140	gct/gcAAGAGTCCTGCt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	64	252	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	114	488	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056352	26056352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	63	287	0	ENST00000343677.2:c.305C>G	p.Ser102Cys	p.S102C	ENST00000343677	NM_005319.3	102	tCt/tGt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73345252	73345252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	96	375	0	ENST00000377767.4:c.1637C>G	p.Ser546Cys	p.S546C	ENST00000377767	NM_014953.3	546	tCt/tGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539712	187539749	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGCTCTAACAAAGAAAGTGAAGAATTCATTTTCCA	CACAGCTCTAACAAAGAAAGTGAAGAATTCATTTTCCA	-			P-0022682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	81	318	0	ENST00000441802.2:c.7991_8028del	p.Leu2664Ter	p.L2664*	ENST00000441802	NM_005245.3	2664	tTGGAAAATGAATTCTTCACTTTCTTTGTTAGAGCTGTG/t																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557767	187557767	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	72	261	0	ENST00000441802.2:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000441802	NM_005245.3	1315	tCa/tAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	90	64	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097687	27097688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	102	147	0	ENST00000324856.7:c.3281dup	p.Gln1095AlafsTer10	p.Q1095Afs*10	ENST00000324856	NM_006015.4	1092	-/A																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011096	12011103	+	splice_region_variant,intron_variant	Splice_Region	DEL	TTATTTTA	TTATTTTA	-			P-0022988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	43	43	0	ENST00000353533.5:c.514-10_514-3del		p.X172_splice	ENST00000353533	NM_003010.3	172																																																																															
SPOP	8405	MSKCC	GRCh37	17	47677801	47677801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	77	270	0	ENST00000347630.2:c.1064C>G	p.Ser355Cys	p.S355C	ENST00000347630	NM_001007230.1	355	tCt/tGt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0022994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	45	330	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112043	115112043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	46	412	1	ENST00000257566.3:c.1697C>T	p.Ala566Val	p.A566V	ENST00000257566	NM_016569.3	566	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577501	7577501	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0022994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	74	407	1	ENST00000269305.4:c.780del	p.Ser261ValfsTer84	p.S261Vfs*84	ENST00000269305	NM_001126112.2	260	tcC/tc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380350	14380350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	20	151	0	ENST00000256196.4:c.67G>T	p.Gly23Cys	p.G23C	ENST00000256196		23	Ggc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	29	55	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	12	80	0				ENST00000310581	NM_198253.2																																																																																
HIST1H1C	3006	MSKCC	GRCh37	6	26056263	26056263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	48	131	0	ENST00000343677.2:c.394G>T	p.Val132Phe	p.V132F	ENST00000343677	NM_005319.3	132	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0023289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	765	326	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
RB1	5925	MSKCC	GRCh37	13	48954331	48954333	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0023289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	196	363	0	ENST00000267163.4:c.1452_1454del	p.Met484_Ser485delinsIle	p.M484_S485delinsI	ENST00000267163	NM_000321.2	484	atGTCt/att																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469043	25469043	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	348	461	0	ENST00000264709.3:c.1415A>G	p.Asp472Gly	p.D472G	ENST00000264709	NM_175629.2	472	gAt/gGt																																																																														
ATRX	546	MSKCC	GRCh37	X	76938385	76938385	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	302	506	0	ENST00000373344.5:c.2363C>G	p.Ser788Ter	p.S788*	ENST00000373344	NM_000489.3	788	tCa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	144	263	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	200	499	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	15	204	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	35	438	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	15	52	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	35	179	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441147	149441147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	47	566	1	ENST00000286301.3:c.1765G>A	p.Gly589Arg	p.G589R	ENST00000286301	NM_005211.3	589	Gga/Aga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807934	3807934	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148166625		P-0023380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	266	516	0	ENST00000262367.5:c.3485A>G	p.Asn1162Ser	p.N1162S	ENST00000262367	NM_004380.2	1162	aAc/aGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213353	36213353	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	826	272	0	ENST00000222270.7:c.2550A>T	p.Glu850Asp	p.E850D	ENST00000222270	NM_014727.1	850	gaA/gaT																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259113	36259377	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCCCACCACCCTCTCCGGGCCAGTACCTTGAAAGCGATGGGCAGGGTCTTGTTGCAGCGCCAGTGCGTAGGCAGCACGGAGCAGAGGAAGTTGGGGCTGTCGGTGCGCACCAGCTCGCCCGGGTGGTCGGCCAGCACCTCCACCATGCTGCGGTCGCCGCTCCTCAGCTTGCCGGCCAGGGCAGCGCCGGCGTCCGGGGCGCCCAGCGGCAACGCCTCGCTCATCTTGCCTGGGCTCAGCGCGGTGGAAGGCGGCGTGAAGCGG	CTCCCACCACCCTCTCCGGGCCAGTACCTTGAAAGCGATGGGCAGGGTCTTGTTGCAGCGCCAGTGCGTAGGCAGCACGGAGCAGAGGAAGTTGGGGCTGTCGGTGCGCACCAGCTCGCCCGGGTGGTCGGCCAGCACCTCCACCATGCTGCGGTCGCCGCTCCTCAGCTTGCCGGCCAGGGCAGCGCCGGCGTCCGGGGCGCCCAGCGGCAACGCCTCGCTCATCTTGCCTGGGCTCAGCGCGGTGGAAGGCGGCGTGAAGCGG	-			P-0023380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	199	441	0	ENST00000300305.3:c.114_351+27del		p.X38_splice	ENST00000300305		38																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31483712	31483712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	64	280	1	ENST00000344624.3:c.2020C>T	p.Pro674Ser	p.P674S	ENST00000344624		674	Ccc/Tcc																																																																														
MET	4233	MSKCC	GRCh37	7	116409711	116409711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	60	180	0	ENST00000397752.3:c.2596G>C	p.Asp866His	p.D866H	ENST00000397752	NM_000245.2	866	Gac/Cac																																																																														
AR	367	MSKCC	GRCh37	X	66766144	66766144	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	2454	249	0	ENST00000374690.3:c.1156C>G	p.Arg386Gly	p.R386G	ENST00000374690	NM_000044.3	386	Cgc/Ggc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243484	46243484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	105	106	0	ENST00000334344.6:c.1837C>T	p.Gln613Ter	p.Q613*	ENST00000334344	NM_152641.2	613	Cag/Tag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	348	324	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100041	157100055	+	inframe_deletion	In_Frame_Del	DEL	AGGAGGAGCAGGAGC	AGGAGGAGCAGGAGC	-			P-0023565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	52	34	2	ENST00000346085.5:c.993_1007delAGGAGGAGCAGGAGC	p.Gly333_Gly337del	p.G333_G337del	ENST00000346085	NM_020732.3	326	ggAGGAGGAGCAGGAGCa/gga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100049	157100049	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	40	17	0	ENST00000346085.5:c.986C>G	p.Ala329Gly	p.A329G	ENST00000346085	NM_020732.3	329	gCa/gGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0023565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	549	739	1	ENST00000269305.4:c.402_403dup	p.Cys135PhefsTer36	p.C135Ffs*36	ENST00000269305	NM_001126112.2	135	tgc/tTTgc																																																																														
KDR	3791	MSKCC	GRCh37	4	55972889	55972890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	73	167	0	ENST00000263923.4:c.1500dup	p.Lys501Ter	p.K501*	ENST00000263923	NM_002253.2	500	-/T																																																																														
MED12	9968	MSKCC	GRCh37	X	70348978	70348978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	96	242	0	ENST00000374080.3:c.3490G>T	p.Asp1164Tyr	p.D1164Y	ENST00000374080		1164	Gac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	290	396	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0024146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	366	572	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470011	25470011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	262	326	0	ENST00000264709.3:c.1031T>C	p.Leu344Pro	p.L344P	ENST00000264709	NM_175629.2	344	cTg/cCg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435827	56435827	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140873038		P-0024146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	33	335	0	ENST00000407977.2:c.1310G>A	p.Arg437Gln	p.R437Q	ENST00000407977		437	cGg/cAg																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47606122	47606122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	232	427	0	ENST00000263735.4:c.586G>T	p.Val196Phe	p.V196F	ENST00000263735	NM_002354.2	196	Gtt/Ttt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225449693	225449693	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	20	297	1	ENST00000264414.4:c.34A>T	p.Lys12Ter	p.K12*	ENST00000264414	NM_003590.4	12	Aag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577523	7577524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	74	274	0	ENST00000269305.4:c.757dup	p.Thr253AsnfsTer11	p.T253Nfs*11	ENST00000269305	NM_001126112.2	253	acc/aAcc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441441	40441441	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	33	173	0	ENST00000345506.4:c.12G>C	p.Trp4Cys	p.W4C	ENST00000345506	NM_003152.3	4	tgG/tgC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398288	+	missense_variant	Missense_Mutation	ONP	CCAGC	CCAGC	ACATG			P-0024147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	51	222	0	ENST00000256078.4:c.31_35delinsCATGT	p.Ala11_Gly12delinsHisVal	p.A11_G12delinsHV	ENST00000256078	NM_033360.2	11	GCTGGt/CATGTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	178	336	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057817	27057817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	130	342	0	ENST00000324856.7:c.1525C>A	p.Pro509Thr	p.P509T	ENST00000324856	NM_006015.4	509	Cca/Aca																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727441	66727441	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	102	185	0	ENST00000307102.5:c.157T>A	p.Phe53Ile	p.F53I	ENST00000307102	NM_002755.3	53	Ttt/Att																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	22	58	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398262	25398262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	26	105	0	ENST00000256078.4:c.57G>T	p.Leu19Phe	p.L19F	ENST00000256078	NM_033360.2	19	ttG/ttT																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920413	134920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	84	351	1	ENST00000398015.3:c.2228G>A	p.Arg743Gln	p.R743Q	ENST00000398015	NM_004441.4	743	cGg/cAg																																																																														
RARA	5914	MSKCC	GRCh37	17	38510561	38510561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	90	283	2	ENST00000254066.5:c.815G>A	p.Arg272Gln	p.R272Q	ENST00000254066	NM_000964.3	272	cGg/cAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	73	262	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	60	155	0	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992720	68992720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182978151		P-0024430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	129	43	0	ENST00000288368.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000288368	NM_024870.2	562	cGt/cAt																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205170	61205170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	173	66	0	ENST00000301761.2:c.110G>A	p.Gly37Asp	p.G37D	ENST00000301761	NM_017841.2	37	gGt/gAt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3656600	3656600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	121	541	2	ENST00000294008.3:c.635G>A	p.Arg212Gln	p.R212Q	ENST00000294008	NM_032444.2	212	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29664450	29664451	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	55	128	0	ENST00000358273.4:c.6495dup	p.Gly2166TrpfsTer3	p.G2166Wfs*3	ENST00000358273	NM_001042492.2	2164	-/T																																																																														
NF1	4763	MSKCC	GRCh37	17	29684022	29684023	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0024430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	32	115	0	ENST00000358273.4:c.7784_7785delAA	p.Lys2595SerfsTer5	p.K2595Sfs*5	ENST00000358273	NM_001042492.2	2595	AAa/a																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24167538	24167538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	85	460	0	ENST00000263121.7:c.922G>T	p.Val308Phe	p.V308F	ENST00000263121	NM_003073.3	308	Gtc/Ttc																																																																														
NF2	4771	MSKCC	GRCh37	22	30070871	30070871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	78	470	0	ENST00000338641.4:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000338641	NM_000268.3	463	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	336	328	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	203	544	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0024502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	155	210	1	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710517	114710517	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0024502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	32	231	0	ENST00000543371.1:c.2T>A	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	aTg/aAg																																																																														
APC	324	MSKCC	GRCh37	5	112175770	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	44	177	0	ENST00000257430.4:c.4480delG	p.Glu1494LysfsTer13	p.E1494Kfs*13	ENST00000257430	NM_000038.5	1493	acG/ac																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478788	56478788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	142	341	0	ENST00000267101.3:c.244G>C	p.Glu82Gln	p.E82Q	ENST00000267101	NM_001982.3	82	Gaa/Caa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39285902	39285902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	33	339	1	ENST00000402219.2:c.257C>A	p.Ala86Glu	p.A86E	ENST00000402219	NM_005633.3	86	gCa/gAa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441973	52441973	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0024780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	108	342	1	ENST00000460680.1:c.375+1G>A		p.X125_splice	ENST00000460680	NM_004656.3	125																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	221	246	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101468	27101468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	133	407	0	ENST00000324856.7:c.4750C>T	p.Gln1584Ter	p.Q1584*	ENST00000324856	NM_006015.4	1584	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711908	89711908	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	83	333	0	ENST00000371953.3:c.526del	p.Tyr176IlefsTer7	p.Y176Ifs*7	ENST00000371953	NM_000314.4	176	Tat/at																																																																														
ATM	472	MSKCC	GRCh37	11	108121687	108121687	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	74	352	0	ENST00000278616.4:c.1495C>T	p.Gln499Ter	p.Q499*	ENST00000278616	NM_000051.3	499	Caa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268140	153268140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	132	279	0	ENST00000281708.4:c.668G>C	p.Arg223Pro	p.R223P	ENST00000281708	NM_033632.3	223	cGc/cCc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922739	44922739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	66	236	0	ENST00000377967.4:c.1600C>A	p.Pro534Thr	p.P534T	ENST00000377967	NM_021140.2	534	Cct/Act																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	161	366	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0024958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	85	191	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	86	196	1	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443482	49443482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	135	277	0	ENST00000301067.7:c.3889C>G	p.Arg1297Gly	p.R1297G	ENST00000301067	NM_003482.3	1297	Cgt/Ggt																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89791115	89791115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	10	77	0	ENST00000336032.3:c.502C>T	p.Arg168Trp	p.R168W	ENST00000336032	NM_006813.2	168	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0025391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	99	214	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	116	220	0	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42795187	42795187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	184	573	0	ENST00000575354.2:c.2267C>T	p.Ala756Val	p.A756V	ENST00000575354	NM_015125.3	756	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542576	187542576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	158	450	0	ENST00000441802.2:c.5164C>T	p.Gln1722Ter	p.Q1722*	ENST00000441802	NM_005245.3	1722	Cag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489568	56489568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	122	375	0	ENST00000267101.3:c.2033G>T	p.Arg678Met	p.R678M	ENST00000267101	NM_001982.3	678	aGg/aTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349179	89349180	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0025391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1283	345	808	0	ENST00000301030.4:c.3770_3771del	p.Lys1257ArgfsTer25	p.K1257Rfs*25	ENST00000301030	NM_001256183.1	1257	aAA/a																																																																														
AKT2	208	MSKCC	GRCh37	19	40741894	40741894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	162	522	2	ENST00000392038.2:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000392038	NM_001626.4	360	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187516954	187516954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	152	405	0	ENST00000441802.2:c.13027C>T	p.Leu4343Phe	p.L4343F	ENST00000441802	NM_005245.3	4343	Ctt/Ttt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630135	187630135	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	239	472	0	ENST00000441802.2:c.847C>T	p.Gln283Ter	p.Q283*	ENST00000441802	NM_005245.3	283	Cag/Tag																																																																														
MSH3	4437	MSKCC	GRCh37	5	79974857	79974857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	169	433	0	ENST00000265081.6:c.1285C>T	p.Pro429Ser	p.P429S	ENST00000265081	NM_002439.4	429	Cct/Tct																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279639	18279639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	166	480	0	ENST00000222254.8:c.1912G>A	p.Gly638Ser	p.G638S	ENST00000222254	NM_005027.3	638	Ggc/Agc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	127	174	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699369	47699369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	202	297	1	ENST00000347630.2:c.139G>A	p.Glu47Lys	p.E47K	ENST00000347630	NM_001007230.1	47	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100833	27100846	+	frameshift_variant	Frame_Shift_Del	DEL	CAATGGATGGCACA	CAATGGATGGCACA	ACG			P-0025393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	152	253	1	ENST00000324856.7:c.4115_4128delinsACG	p.Pro1372HisfsTer69	p.P1372Hfs*69	ENST00000324856	NM_006015.4	1372	cCAATGGATGGCACA/cACG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845562	151845562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	137	421	0	ENST00000262189.6:c.13450C>T	p.His4484Tyr	p.H4484Y	ENST00000262189	NM_170606.2	4484	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	128	438	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663299	227663301	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0025463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	71	245	2	ENST00000305123.5:c.154_156delAAG	p.Lys52del	p.K52del	ENST00000305123	NM_005544.2	52	AAG/-																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249451	153249451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	177	148	1	ENST00000281708.4:c.1327C>T	p.Leu443Phe	p.L443F	ENST00000281708	NM_033632.3	443	Ctc/Ttc																																																																														
APC	324	MSKCC	GRCh37	5	112103071	112103071	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	48	105	0	ENST00000257430.4:c.406G>T	p.Glu136Ter	p.E136*	ENST00000257430	NM_000038.5	136	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0025545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	753	577	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49425121	49425121	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	224	478	0	ENST00000301067.7:c.13367C>G	p.Ser4456Ter	p.S4456*	ENST00000301067	NM_003482.3	4456	tCa/tGa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244451	41244451	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	328	456	0	ENST00000357654.3:c.3097G>T	p.Glu1033Ter	p.E1033*	ENST00000357654	NM_007294.3	1033	Gaa/Taa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15273329	15273329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1761	236	420	0	ENST00000263388.2:c.5860G>A	p.Ala1954Thr	p.A1954T	ENST00000263388	NM_000435.2	1954	Gcc/Acc																																																																														
AKT2	208	MSKCC	GRCh37	19	40741993	40741993	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	75	383	0	ENST00000392038.2:c.979T>A	p.Tyr327Asn	p.Y327N	ENST00000392038	NM_001626.4	327	Tat/Aat																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031971	26031971	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	264	314	0	ENST00000244661.2:c.318G>C	p.Glu106Asp	p.E106D	ENST00000244661	NM_003537.3	106	gaG/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0025687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	426	424	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0025687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	302	90	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0025687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	302	90	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	190	541	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
CIC	23152	MSKCC	GRCh37	19	42795544	42795544	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	230	669	0	ENST00000575354.2:c.2624A>G	p.Lys875Arg	p.K875R	ENST00000575354	NM_015125.3	875	aAa/aGa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115279454	115279454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	15	269	0	ENST00000438362.2:c.563C>A	p.Thr188Asn	p.T188N	ENST00000438362	NM_001242891.1	188	aCc/aAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29654775	29654776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	79	217	0	ENST00000358273.4:c.5529dup	p.Lys1844GlnfsTer18	p.K1844Qfs*18	ENST00000358273	NM_001042492.2	1843	acc/aCcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	20	75	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	89	77	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	285	376	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	45	201	1	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	24	112	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	77	96	0	ENST00000342988.3:c.1064A>T	p.Asp355Val	p.D355V	ENST00000342988	NM_005359.5	355	gAc/gTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214022	36214022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	425	454	0	ENST00000222270.7:c.2848C>T	p.Arg950Trp	p.R950W	ENST00000222270	NM_014727.1	950	Cgg/Tgg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474619	138474619	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	90	86	0	ENST00000289153.2:c.374A>C	p.Lys125Thr	p.K125T	ENST00000289153	NM_006219.2	125	aAa/aCa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519454	176519454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	336	425	0	ENST00000292408.4:c.860T>C	p.Ile287Thr	p.I287T	ENST00000292408	NM_213647.1	287	aTc/aCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576899	7576900	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	304	222	0	ENST00000269305.4:c.946_947insT	p.Pro316LeufsTer21	p.P316Lfs*21	ENST00000269305	NM_001126112.2	316	ccc/cTcc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112603	2112603	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0026636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	386	366	0	ENST00000219476.3:c.1361+2T>C		p.X454_splice	ENST00000219476	NM_000548.3	454																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221613	36221613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1736	253	490	1	ENST00000222270.7:c.5282C>T	p.Ser1761Phe	p.S1761F	ENST00000222270	NM_014727.1	1761	tCc/tTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021283	31021283	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	354	278	2	ENST00000375687.4:c.1282C>T	p.Gln428Ter	p.Q428*	ENST00000375687	NM_015338.5	428	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	218	332	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	136	285	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	111	226	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	347	182	1	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029453	16029454	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	213	334	2	ENST00000268712.3:c.1576_1577delGA	p.Glu526LysfsTer9	p.E526Kfs*9	ENST00000268712	NM_006311.3	526	GAa/a																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729743	162729743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	221	248	1	ENST00000367921.3:c.829C>T	p.Arg277Cys	p.R277C	ENST00000367921	NM_006182.2	277	Cgc/Tgc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118990	70118990	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	379	339	0	ENST00000245479.2:c.562G>T	p.Glu188Ter	p.E188*	ENST00000245479	NM_000346.3	188	Gag/Tag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953237	81953237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	155	214	0	ENST00000359376.3:c.2203G>A	p.Val735Met	p.V735M	ENST00000359376	NM_002661.3	735	Gtg/Atg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784902	9784902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	331	331	0	ENST00000377346.4:c.2905C>T	p.Arg969Cys	p.R969C	ENST00000377346	NM_005026.3	969	Cgc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711316	114711317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	247	387	0	ENST00000543371.1:c.332_333dup	p.Thr112Ter	p.T112*	ENST00000543371	NM_001198531.1	111	ctg/cTGtg																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288380	21288380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	234	366	0	ENST00000354336.3:c.625C>T	p.Gln209Ter	p.Q209*	ENST00000354336	NM_005207.3	209	Caa/Taa																																																																														
RHOA	387	MSKCC	GRCh37	3	49399991	49399991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	246	338	2	ENST00000418115.1:c.346G>A	p.Gly116Arg	p.G116R	ENST00000418115	NM_001664.2	116	Ggg/Agg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750435	57750435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	143	248	0	ENST00000274289.3:c.2033A>G	p.Asn678Ser	p.N678S	ENST00000274289	NM_006622.3	678	aAc/aGc																																																																														
APC	324	MSKCC	GRCh37	5	112174386	112174386	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	62	121	1	ENST00000257430.4:c.3095C>A	p.Ser1032Ter	p.S1032*	ENST00000257430	NM_000038.5	1032	tCa/tAa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739816	41739816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	187	190	0	ENST00000242208.4:c.157G>A	p.Glu53Lys	p.E53K	ENST00000242208	NM_002192.2	53	Gag/Aag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372278	55372278	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	304	206	0	ENST00000297316.4:c.968A>G	p.His323Arg	p.H323R	ENST00000297316	NM_022454.3	323	cAc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0027355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	220	543	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0027355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	33	94	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0027355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	33	40	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714176	43714176	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	189	470	2	ENST00000382044.4:c.3977T>A	p.Leu1326His	p.L1326H	ENST00000382044	NM_001141980.1	1326	cTc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573537	48573537	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	20	55	0	ENST00000342988.3:c.121G>T	p.Glu41Ter	p.E41*	ENST00000342988	NM_005359.5	41	Gaa/Taa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575677	48575677	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0027355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	10	86	0	ENST00000342988.3:c.437T>G	p.Leu146Ter	p.L146*	ENST00000342988	NM_005359.5	146	tTa/tGa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968235	2968235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	307	639	1	ENST00000396946.4:c.1751G>A	p.Arg584His	p.R584H	ENST00000396946	NM_032415.4	584	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	111	247	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	800	615	1	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0027356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	288	210	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970914	79970915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	203	477	5	ENST00000265081.6:c.1148dupA	p.Asn385GlnfsTer19	p.N385Qfs*19	ENST00000265081	NM_002439.4	380	-/A																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459183	120459183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	457	435	2	ENST00000256646.2:c.6162G>A	p.Met2054Ile	p.M2054I	ENST00000256646	NM_024408.3	2054	atG/atA																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120616	115120616	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	432	697	1	ENST00000257566.3:c.389+1G>A		p.X130_splice	ENST00000257566	NM_016569.3	130																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41275750	41275750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	329	435	0	ENST00000349496.5:c.1645C>T	p.Arg549Cys	p.R549C	ENST00000349496	NM_001904.3	549	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	143	507	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971101	21971101	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	109	266	3	ENST00000361570.3:c.423C>A	p.Cys141Ter	p.C141*	ENST00000361570	NM_058195.3	141	tgC/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971101	21971101	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	109	266	3	ENST00000361570.3:c.423C>A	p.Cys141Ter	p.C141*	ENST00000361570	NM_058195.3	141	tgC/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	297	587	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971101	21971101	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	109	266	3	ENST00000361570.3:c.423C>A	p.Cys141Ter	p.C141*	ENST00000361570	NM_058195.3	141	tgC/tgA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779220	3779220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	116	223	3	ENST00000262367.5:c.5828C>T	p.Pro1943Leu	p.P1943L	ENST00000262367	NM_004380.2	1943	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	287	468	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997802	149997803	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TCCACATCGACAGCTTGAGGGATCCCCCCATTCATTACTGAAA			P-0027870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	58	378	0	ENST00000253339.5:c.2622_2664dup	p.Asp889PhefsTer3	p.D889Ffs*3	ENST00000253339		888	-/TTTCAGTAATGAATGGGGGGATCCCTCAAGCTGTCGATGTGGA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971145	21971159	+	inframe_deletion	In_Frame_Del	DEL	GTTGGGCTCCGCGCC	GTTGGGCTCCGCGCC	-			P-0027870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	56	348	0	ENST00000304494.5:c.199_213del	p.Gly67_Asn71del	p.G67_N71del	ENST00000304494	NM_000077.4	67	GGCGCGGAGCCCAAC/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971145	21971159	+	inframe_deletion	In_Frame_Del	DEL	GTTGGGCTCCGCGCC	GTTGGGCTCCGCGCC	-			P-0027870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	56	348	0	ENST00000304494.5:c.199_213del	p.Gly67_Asn71del	p.G67_N71del	ENST00000304494	NM_000077.4	67	GGCGCGGAGCCCAAC/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971145	21971159	+	inframe_deletion	In_Frame_Del	DEL	GTTGGGCTCCGCGCC	GTTGGGCTCCGCGCC	-			P-0027870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	348	56	0	ENST00000304494.5:c.199_213del	p.Gly67_Asn71del	p.G67_N71del	ENST00000304494	NM_000077.4	67	GGCGCGGAGCCCAAC/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	229	438	2	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424707	49424717	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTGACCCC	GCCCTGACCCC	-			P-0027872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	185	400	0	ENST00000301067.7:c.13630_13640del	p.Gly4544GlnfsTer27	p.G4544Qfs*27	ENST00000301067	NM_003482.3	4544	GGGGTCAGGGCc/c																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239960	53239961	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	462	101	0	ENST00000375401.3:c.1480dup	p.Ile494AsnfsTer23	p.I494Nfs*23	ENST00000375401	NM_004187.3	494	atc/aAtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0028415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	1074	606	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306676	41306676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	614	518	6	ENST00000373198.4:c.983G>A	p.Arg328His	p.R328H	ENST00000373198	NM_133170.3	328	cGc/cAc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0028415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	327	500	7	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913878	32913878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	52	209	0	ENST00000380152.3:c.5386G>C	p.Asp1796His	p.D1796H	ENST00000380152		1796	Gat/Cat																																																																														
FANCA	2175	MSKCC	GRCh37	16	89862408	89862408	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	349	495	1	ENST00000389301.3:c.912del	p.His305ThrfsTer6	p.H305Tfs*6	ENST00000389301	NM_000135.2	304	ggA/gg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31388054	31388054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	234	348	1	ENST00000328111.2:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000328111	NM_006892.3	619	Gag/Aag																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286827	33286827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	101	235	0	ENST00000374542.5:c.2110G>A	p.Ala704Thr	p.A704T	ENST00000374542	NM_001141970.1	704	Gcc/Acc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165538	47165539	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGTGGAGGC			P-0028418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	118	237	0	ENST00000409792.3:c.579_587dup	p.Pro194_Pro196dup	p.P194_P196dup	ENST00000409792	NM_014159.6	194	cct/ccGCCTCCACCt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	74	475	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	86	509	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	11	133	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	36	316	3	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																														
TET2	54790	MSKCC	GRCh37	4	106196213	106196213	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	18	134	0	ENST00000380013.4:c.4546C>T	p.Arg1516Ter	p.R1516*	ENST00000380013	NM_001127208.2	1516	Cga/Tga																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	33	322	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17117087	17117087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	433	77	0	ENST00000285071.4:c.1622C>T	p.Ala541Val	p.A541V	ENST00000285071	NM_144997.5	541	gCg/gTg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721164	176721165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	32	315	0	ENST00000439151.2:c.6801dup	p.Ala2268SerfsTer13	p.A2268Sfs*13	ENST00000439151	NM_022455.4	2265	-/A																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828772	3828772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	22	443	1	ENST00000262367.5:c.1870C>T	p.Arg624Cys	p.R624C	ENST00000262367	NM_004380.2	624	Cgc/Tgc																																																																														
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	40	322	2	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																														
EED	8726	MSKCC	GRCh37	11	85989562	85989562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	27	211	0	ENST00000263360.6:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000263360	NM_003797.3	441	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	30	385	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942751	44942751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	56	191	1	ENST00000377967.4:c.3331C>T	p.Arg1111Cys	p.R1111C	ENST00000377967	NM_021140.2	1111	Cgt/Tgt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131953826	131953826	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	16	240	0	ENST00000265335.6:c.3229C>T	p.Arg1077Ter	p.R1077*	ENST00000265335		1077	Cga/Tga																																																																														
SMO	6608	MSKCC	GRCh37	7	128852243	128852243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149170801		P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	90	470	0	ENST00000249373.3:c.2315G>A	p.Arg772His	p.R772H	ENST00000249373	NM_005631.4	772	cGc/cAc																																																																														
ALK	238	MSKCC	GRCh37	2	29446317	29446317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	104	458	0	ENST00000389048.3:c.3250C>T	p.Arg1084Cys	p.R1084C	ENST00000389048	NM_004304.4	1084	Cgc/Tgc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30946592	30946594	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs752094508		P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	137	226	0	ENST00000375687.4:c.25_27del	p.Lys9del	p.K9del	ENST00000375687	NM_015338.5	5	cAGAag/cag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	103	665	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	102	517	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630855	187630855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	35	366	0	ENST00000441802.2:c.127G>A	p.Val43Met	p.V43M	ENST00000441802	NM_005245.3	43	Gtg/Atg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	278	601	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
ATM	472	MSKCC	GRCh37	11	108201089	108201089	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	32	237	0	ENST00000278616.4:c.7456C>T	p.Arg2486Ter	p.R2486*	ENST00000278616	NM_000051.3	2486	Cga/Tga																																																																														
INSR	3643	MSKCC	GRCh37	19	7184411	7184411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	131	495	1	ENST00000302850.5:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000302850	NM_000208.2	297	cGg/cAg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321686	62321686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	462	108	1	ENST00000508582.2:c.2377C>T	p.Arg793Cys	p.R793C	ENST00000508582		793	Cgt/Tgt																																																																														
CARM1	10498	MSKCC	GRCh37	19	11024682	11024682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	61	357	1	ENST00000327064.4:c.799C>T	p.Arg267Cys	p.R267C	ENST00000327064	NM_199141.1	267	Cgc/Tgc																																																																														
BCL6	604	MSKCC	GRCh37	3	187444681	187444681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	28	207	1	ENST00000232014.4:c.1546G>A	p.Gly516Arg	p.G516R	ENST00000232014	NM_001130845.1	516	Ggg/Agg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864117	57864117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	94	324	0	ENST00000228682.2:c.1594C>T	p.Arg532Cys	p.R532C	ENST00000228682	NM_005269.2	532	Cgc/Tgc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243502	41243502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	35	468	1	ENST00000357654.3:c.4046C>T	p.Thr1349Met	p.T1349M	ENST00000357654	NM_007294.3	1349	aCg/aTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260194	16260194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	57	357	1	ENST00000375759.3:c.7464del	p.Ile2489SerfsTer10	p.I2489Sfs*10	ENST00000375759	NM_015001.2	2487	Ggg/gg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721713	176721713	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	26	331	0	ENST00000439151.2:c.7349del	p.Asn2450IlefsTer6	p.N2450Ifs*6	ENST00000439151	NM_022455.4	2448	tcA/tc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420913	49420913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	85	449	1	ENST00000301067.7:c.14836G>A	p.Val4946Ile	p.V4946I	ENST00000301067	NM_003482.3	4946	Gtc/Atc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196092	138196092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200740561		P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	42	226	0	ENST00000237289.4:c.406C>T	p.Arg136Cys	p.R136C	ENST00000237289	NM_001270507.1	136	Cgc/Tgc																																																																														
TET1	80312	MSKCC	GRCh37	10	70450805	70450805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	45	334	0	ENST00000373644.4:c.5645C>T	p.Thr1882Met	p.T1882M	ENST00000373644	NM_030625.2	1882	aCg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108121571	108121571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	43	364	0	ENST00000278616.4:c.1379C>T	p.Thr460Met	p.T460M	ENST00000278616	NM_000051.3	460	aCg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108160402	108160402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	23	236	0	ENST00000278616.4:c.4310G>T	p.Arg1437Ile	p.R1437I	ENST00000278616	NM_000051.3	1437	aGa/aTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552744	18552744	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	42	323	0	ENST00000266497.5:c.2155T>C	p.Ser719Pro	p.S719P	ENST00000266497		719	Tct/Cct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418361	49418361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	45	259	0	ENST00000301067.7:c.16052G>A	p.Arg5351Gln	p.R5351Q	ENST00000301067	NM_003482.3	5351	cGg/cAg																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484048	50484048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	51	397	1	ENST00000394963.4:c.898C>T	p.Arg300Cys	p.R300C	ENST00000394963	NM_003076.4	300	Cgc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031828	10031828	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	83	430	0	ENST00000330684.3:c.995A>G	p.His332Arg	p.H332R	ENST00000330684	NM_001134407.1	332	cAc/cGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828807	72828807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	52	371	0	ENST00000268489.5:c.7774del	p.Ala2592ProfsTer20	p.A2592Pfs*20	ENST00000268489	NM_006885.3	2592	Gcc/cc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347878	89347878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	65	403	1	ENST00000301030.4:c.5072C>T	p.Ala1691Val	p.A1691V	ENST00000301030	NM_001256183.1	1691	gCg/gTg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30321668	30321668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	50	408	0	ENST00000322652.5:c.1523G>A	p.Arg508His	p.R508H	ENST00000322652	NM_015355.2	508	cGc/cAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554687	63554687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	28	312	0	ENST00000307078.5:c.52C>T	p.Arg18Cys	p.R18C	ENST00000307078	NM_004655.3	18	Cgt/Tgt																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379781	17379781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	158	630	0	ENST00000359435.4:c.166G>A	p.Ala56Thr	p.A56T	ENST00000359435	NM_001033549.1	56	Gcc/Acc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18974395	18974395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	96	388	2	ENST00000262803.5:c.2749C>T	p.Arg917Trp	p.R917W	ENST00000262803	NM_002911.3	917	Cgg/Tgg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62303912	62303912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	80	406	1	ENST00000508582.2:c.775C>T	p.Arg259Cys	p.R259C	ENST00000508582		259	Cgc/Tgc																																																																														
MST1	4485	MSKCC	GRCh37	3	49723041	49723041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	40	217	0	ENST00000449682.2:c.1375C>A	p.Leu459Met	p.L459M	ENST00000449682	NM_020998.3	459	Ctg/Atg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932981	49932981	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	44	473	0	ENST00000296474.3:c.2963T>C	p.Val988Ala	p.V988A	ENST00000296474	NM_002447.2	988	gTt/gCt																																																																														
KIT	3815	MSKCC	GRCh37	4	55592121	55592121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	50	330	0	ENST00000288135.5:c.1445C>T	p.Ala482Val	p.A482V	ENST00000288135	NM_000222.2	482	gCa/gTa																																																																														
SDHA	6389	MSKCC	GRCh37	5	233618	233618	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	20	221	0	ENST00000264932.6:c.922A>G	p.Thr308Ala	p.T308A	ENST00000264932	NM_004168.2	308	Acg/Gcg																																																																														
PARK2	5071	MSKCC	GRCh37	6	162206854	162206854	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	49	356	0	ENST00000366898.1:c.821A>T	p.Asp274Val	p.D274V	ENST00000366898	NM_004562.2	274	gAt/gTt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545698	106545698	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	59	396	0	ENST00000359195.3:c.3179del	p.Asn1060MetfsTer48	p.N1060Mfs*48	ENST00000359195	NM_002649.2	1059	Aaa/aa																																																																														
SMO	6608	MSKCC	GRCh37	7	128829084	128829084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	16	35	0	ENST00000249373.3:c.92C>T	p.Ala31Val	p.A31V	ENST00000249373	NM_005631.4	31	gCc/gTc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285748	87285748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	115	368	1	ENST00000277120.3:c.85G>A	p.Ala29Thr	p.A29T	ENST00000277120		29	Gct/Act																																																																														
FANCC	2176	MSKCC	GRCh37	9	97873825	97873825	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140687953		P-0029817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	114	466	0	ENST00000289081.3:c.1249G>A	p.Glu417Lys	p.E417K	ENST00000289081	NM_000136.2	417	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	62	242	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	227	81	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	227	81	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	227	81	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579388	7579422	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGG	TGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGG	-			P-0029996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	103	349	0	ENST00000269305.4:c.265_299del	p.Pro89GlufsTer48	p.P89Efs*48	ENST00000269305	NM_001126112.2	89	CCCTCCTGGCCCCTGTCATCTTCTGTCCCTTCCCAg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	252	433	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0030304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	48	457	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251754	212251754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	180	261	0	ENST00000342788.4:c.3305T>G	p.Phe1102Cys	p.F1102C	ENST00000342788	NM_005235.2	1102	tTt/tGt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436231	110436231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	25	184	0	ENST00000375856.3:c.2170G>A	p.Gly724Arg	p.G724R	ENST00000375856	NM_003749.2	724	Ggg/Agg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89825000	89825000	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	154	345	0	ENST00000389301.3:c.2966T>A	p.Met989Lys	p.M989K	ENST00000389301	NM_000135.2	989	aTg/aAg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860547	45860547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150865508		P-0030304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	69	472	0	ENST00000391945.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000391945	NM_000400.3	487	cGg/cAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005842	69005842	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0030304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	244	123	0	ENST00000288368.4:c.2253A>C	p.Gln751His	p.Q751H	ENST00000288368	NM_024870.2	751	caA/caC																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249606	110249606	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	92	502	2	ENST00000374672.4:c.1069C>T	p.Gln357Ter	p.Q357*	ENST00000374672	NM_004235.4	357	Cag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66942711	66942711	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	120	216	0	ENST00000374690.3:c.2492T>C	p.Leu831Pro	p.L831P	ENST00000374690	NM_000044.3	831	cTt/cCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	41	216	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	212	249	1	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281629	49281629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	331	307	0	ENST00000282018.3:c.676C>T	p.Arg226Trp	p.R226W	ENST00000282018	NM_020377.2	226	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175748	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	ATACTTTATTACA	ATACTTTATTACA	-			P-0030554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	48	100	0	ENST00000257430.4:c.4457_4469del	p.Asp1486ValfsTer17	p.D1486Vfs*17	ENST00000257430	NM_000038.5	1486	gATACTTTATTACAt/gt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	383	43	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	149	645	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	42	303	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508235	106508235	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	79	209	0	ENST00000359195.3:c.229C>T	p.Arg77Ter	p.R77*	ENST00000359195	NM_002649.2	77	Cga/Tga																																																																														
STK40	83931	MSKCC	GRCh37	1	36807420	36807447	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCCCAGCCGTCGCACCGGTGGTGCGC	TGGCCCAGCCGTCGCACCGGTGGTGCGC	-			P-0030585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	227	498	0	ENST00000373129.3:c.1217_1244del	p.Ser406ThrfsTer6	p.S406Tfs*6	ENST00000373129	NM_032017.1	406	aGCGCACCACCGGTGCGACGGCTGGGCCAc/ac																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166347	118166347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	67	284	0	ENST00000369448.3:c.857G>A	p.Arg286Lys	p.R286K	ENST00000369448	NM_017709.3	286	aGg/aAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914938	32914939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAAA			P-0030585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	166	366	0	ENST00000380152.3:c.6447_6450dup	p.Val2151Ter	p.V2151*	ENST00000380152		2149	att/atTAAAt																																																																														
CDH1	999	MSKCC	GRCh37	16	68847296	68847318	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGCGTGGGAGGCTGTATACA	CCCAGCGTGGGAGGCTGTATACA	-			P-0030585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	233	430	0	ENST00000261769.5:c.1220_1242del	p.Pro407HisfsTer4	p.P407Hfs*4	ENST00000261769	NM_004360.3	406	acCCCAGCGTGGGAGGCTGTATACAcc/accc																																																																														
TP53	7157	MSKCC	GRCh37	17	7573991	7574135	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATTCAGCTCTCGGAACATCTCGAAGCGCTCACGCCCACGGATCTGCAGCAACAGAGGAGGGGGAGAAGTAAGTATATACACAGTACCTGAGTTAAAAGATGGTTCAAGTTACAATTGTTTGACTTTATGACGGTACAAAAGCAA	CATTCAGCTCTCGGAACATCTCGAAGCGCTCACGCCCACGGATCTGCAGCAACAGAGGAGGGGGAGAAGTAAGTATATACACAGTACCTGAGTTAAAAGATGGTTCAAGTTACAATTGTTTGACTTTATGACGGTACAAAAGCAA	-			P-0030585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	141	491	0	ENST00000269305.4:c.994-102_1036del		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945789	17945789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	201	502	1	ENST00000458235.1:c.2071G>T	p.Val691Leu	p.V691L	ENST00000458235	NM_000215.3	691	Gtg/Ttg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	142	102	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	370	398	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	575	759	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	453	228	0	ENST00000304494.5:c.281T>G	p.Leu94Arg	p.L94R	ENST00000304494	NM_000077.4	94	cTg/cGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	453	228	0	ENST00000304494.5:c.281T>G	p.Leu94Arg	p.L94R	ENST00000304494	NM_000077.4	94	cTg/cGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100374	27100374	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0031041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	294	583	0	ENST00000324856.7:c.4086T>G	p.Tyr1362Ter	p.Y1362*	ENST00000324856	NM_006015.4	1362	taT/taG																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031900	10031900	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	78	548	0	ENST00000330684.3:c.923A>G	p.Glu308Gly	p.E308G	ENST00000330684	NM_001134407.1	308	gAg/gGg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99204063	99204063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	77	350	0	ENST00000074304.5:c.2926G>A	p.Glu976Lys	p.E976K	ENST00000074304	NM_001134224.1	976	Gaa/Aaa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409892	63409892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	136	347	0	ENST00000330258.3:c.3275C>A	p.Pro1092His	p.P1092H	ENST00000330258	NM_152424.3	1092	cCt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	211	481	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	229	703	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0031187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	377	135	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0031187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	377	135	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	162	415	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
CD79A	973	MSKCC	GRCh37	19	42383357	42383357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	161	575	0	ENST00000221972.3:c.377G>A	p.Arg126His	p.R126H	ENST00000221972	NM_021601.3	126	cGc/cAc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911099	29911100	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AA			P-0031187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	165	562	1	ENST00000376809.5:c.398_399delinsAA	p.Phe133Ter	p.F133*	ENST00000376809	NM_002116.7	133	tTC/tAA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	39	63	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
B2M	567	MSKCC	GRCh37	15	45007635	45007635	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	23	33	0	ENST00000558401.1:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000558401	NM_004048.2	28	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	28	52	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	75	80	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	211	351	1	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390585	139390585	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111627256		P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	387	498	2	ENST00000277541.6:c.7606G>A	p.Val2536Ile	p.V2536I	ENST00000277541	NM_017617.3	2536	Gtc/Atc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593507	48593507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	42	70	0	ENST00000342988.3:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000342988	NM_005359.5	420	Cgt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46242662	46242662	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	25	51	0	ENST00000334344.6:c.1624C>T	p.Arg542Ter	p.R542*	ENST00000334344	NM_152641.2	542	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	209	142	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	21	22	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	240	312	1	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	41	76	0	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933640	39933640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	181	227	0	ENST00000378444.4:c.959C>T	p.Ala320Val	p.A320V	ENST00000378444	NM_001123385.1	320	gCg/gTg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257102	19257102	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	147	239	1	ENST00000162023.5:c.861delC	p.Ala288ProfsTer?	p.A288Pfs*?	ENST00000162023		287	ccC/cc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	48	54	0	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812317	212812317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	34	42	0	ENST00000342788.4:c.259G>A	p.Val87Met	p.V87M	ENST00000342788	NM_005235.2	87	Gtg/Atg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983363	15983363	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	27	62	0	ENST00000268712.3:c.3416T>C	p.Ile1139Thr	p.I1139T	ENST00000268712	NM_006311.3	1139	aTa/aCa																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856377	111856377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	117	127	1	ENST00000341259.2:c.428G>A	p.Arg143His	p.R143H	ENST00000341259	NM_005475.2	143	cGc/cAc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625159	69625159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	280	365	1	ENST00000334134.2:c.634C>T	p.Arg212Trp	p.R212W	ENST00000334134	NM_005247.2	212	Cgg/Tgg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	231	377	1	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5239002	5239002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	316	474	0	ENST00000357368.4:c.1777C>T	p.Arg593Cys	p.R593C	ENST00000357368	NM_002850.3	593	Cgc/Tgc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247358	71247358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	29	277	0	ENST00000318789.4:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000318789	NM_032682.5	59	Caa/Taa																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655272	45655272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	206	323	2	ENST00000407780.3:c.580C>T	p.Arg194Trp	p.R194W	ENST00000407780	NM_001283052.1	194	Cgg/Tgg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735351	204735351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	77	104	0	ENST00000302823.3:c.152G>A	p.Arg51Gln	p.R51Q	ENST00000302823	NM_005214.4	51	cGa/cAa																																																																														
MSI1	4440	MSKCC	GRCh37	12	120783952	120783952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	118	336	0	ENST00000257552.2:c.1033G>A	p.Gly345Ser	p.G345S	ENST00000257552	NM_002442.3	345	Ggc/Agc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	83	115	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	81	141	7	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374298	138374298	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	78	125	0	ENST00000289153.2:c.3146T>G	p.Leu1049Arg	p.L1049R	ENST00000289153	NM_006219.2	1049	cTc/cGc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627218	37627218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	62	109	0	ENST00000447079.4:c.1133G>A	p.Arg378His	p.R378H	ENST00000447079	NM_015083.1	378	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440420	49440420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	201	375	1	ENST00000301067.7:c.4390G>A	p.Val1464Ile	p.V1464I	ENST00000301067	NM_003482.3	1464	Gtc/Atc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216642	36216642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	268	385	0	ENST00000222270.7:c.3808C>T	p.Arg1270Cys	p.R1270C	ENST00000222270	NM_014727.1	1270	Cgc/Tgc																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983281	149983281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	19	93	0	ENST00000253339.5:c.2977G>A	p.Glu993Lys	p.E993K	ENST00000253339		993	Gaa/Aaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849153	156849153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	138	207	0	ENST00000524377.1:c.2045G>A	p.Arg682His	p.R682H	ENST00000524377	NM_002529.3	682	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108164136	108164137	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	23	55	0	ENST00000278616.4:c.4713dup	p.Lys1572Ter	p.K1572*	ENST00000278616	NM_000051.3	1570	gtt/gTtt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431159	49431159	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	287	384	0	ENST00000301067.7:c.9980A>G	p.Gln3327Arg	p.Q3327R	ENST00000301067	NM_003482.3	3327	cAg/cGg																																																																														
RAD51	5888	MSKCC	GRCh37	15	40993362	40993362	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	34	46	0	ENST00000267868.3:c.188T>A	p.Ile63Asn	p.I63N	ENST00000267868	NM_002875.4	63	aTt/aAt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112990	2112990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	330	485	1	ENST00000219476.3:c.1379C>T	p.Ala460Val	p.A460V	ENST00000219476	NM_000548.3	460	gCc/gTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134470	2134470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	338	445	0	ENST00000219476.3:c.4247C>T	p.Ala1416Val	p.A1416V	ENST00000219476	NM_000548.3	1416	gCc/gTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828083	3828083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	174	309	0	ENST00000262367.5:c.2042A>G	p.Asn681Ser	p.N681S	ENST00000262367	NM_004380.2	681	aAc/aGc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128490	30128490	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	124	218	0	ENST00000263025.4:c.892A>G	p.Lys298Glu	p.K298E	ENST00000263025	NM_002746.2	298	Aag/Gag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805076	89805076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	328	370	0	ENST00000389301.3:c.4301C>T	p.Ala1434Val	p.A1434V	ENST00000389301	NM_000135.2	1434	gCc/gTc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40457658	40457658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	217	315	0	ENST00000345506.4:c.1411C>A	p.His471Asn	p.H471N	ENST00000345506	NM_003152.3	471	Cac/Aac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593486	48593486	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	82	69	0	ENST00000342988.3:c.1237T>C	p.Tyr413His	p.Y413H	ENST00000342988	NM_005359.5	413	Tac/Cac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5211706	5211706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	176	295	0	ENST00000357368.4:c.5129G>A	p.Arg1710His	p.R1710H	ENST00000357368	NM_002850.3	1710	cGc/cAc																																																																														
INSR	3643	MSKCC	GRCh37	19	7125388	7125388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	320	441	1	ENST00000302850.5:c.3164C>T	p.Ala1055Val	p.A1055V	ENST00000302850	NM_000208.2	1055	gCg/gTg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383692	42383692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202097187		P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	257	351	0	ENST00000221972.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000221972	NM_021601.3	156	gCg/gTg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637354	47637354	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	88	116	0	ENST00000233146.2:c.488T>A	p.Val163Asp	p.V163D	ENST00000233146	NM_000251.2	163	gTt/gAt																																																																														
INHA	3623	MSKCC	GRCh37	2	220439517	220439517	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142156311		P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	43	284	0	ENST00000243786.2:c.370C>T	p.Arg124Cys	p.R124C	ENST00000243786	NM_002191.3	124	Cgc/Tgc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538355	9538355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	38	50	0	ENST00000353224.5:c.1643T>A	p.Val548Asp	p.V548D	ENST00000353224	NM_177990.2	548	gTc/gAc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62320979	62320979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	177	254	0	ENST00000508582.2:c.2075G>A	p.Gly692Asp	p.G692D	ENST00000508582		692	gGc/gAc																																																																														
TET2	54790	MSKCC	GRCh37	4	106157048	106157048	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	15	111	0	ENST00000380013.4:c.1949A>G	p.His650Arg	p.H650R	ENST00000380013	NM_001127208.2	650	cAt/cGt																																																																														
TET2	54790	MSKCC	GRCh37	4	106164887	106164887	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	209	237	0	ENST00000380013.4:c.3755T>C	p.Leu1252Pro	p.L1252P	ENST00000380013	NM_001127208.2	1252	cTg/cCg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681703	30681703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	131	163	0	ENST00000376406.3:c.394C>T	p.Arg132Cys	p.R132C	ENST00000376406	NM_014641.2	132	Cgc/Tgc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32165237	32165237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	181	262	0	ENST00000375023.3:c.4891G>A	p.Val1631Met	p.V1631M	ENST00000375023	NM_004557.3	1631	Gtg/Atg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29197752	29197752	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	168	265	0	ENST00000240100.2:c.442G>C	p.Glu148Gln	p.E148Q	ENST00000240100	NM_001394.6	148	Gag/Cag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372146	55372146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	179	306	0	ENST00000297316.4:c.836C>T	p.Ala279Val	p.A279V	ENST00000297316	NM_022454.3	279	gCg/gTg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739485	145739485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	61	367	1	ENST00000428558.2:c.1885C>T	p.Arg629Trp	p.R629W	ENST00000428558	NM_004260.3	629	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389304	8389304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	14	91	0	ENST00000356435.5:c.4314C>A	p.Asp1438Glu	p.D1438E	ENST00000356435		1438	gaC/gaA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391212	139391212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	261	410	0	ENST00000277541.6:c.6979C>T	p.Arg2327Trp	p.R2327W	ENST00000277541	NM_017617.3	2327	Cgg/Tgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401008	139401008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	284	435	0	ENST00000277541.6:c.3985G>A	p.Ala1329Thr	p.A1329T	ENST00000277541	NM_017617.3	1329	Gcc/Acc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793259	139793259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	224	376	1	ENST00000247668.2:c.67C>A	p.Leu23Ile	p.L23I	ENST00000247668	NM_021138.3	23	Ctc/Atc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240811	53240811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	117	21	0	ENST00000375401.3:c.1269G>T	p.Lys423Asn	p.K423N	ENST00000375401	NM_004187.3	423	aaG/aaT																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	169	315	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	11	295	1	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	170	486	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	75	267	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	90	394	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	174	608	1	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	105	495	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	313	64	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310914	123310914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	144	377	0	ENST00000358487.5:c.514G>A	p.Ala172Thr	p.A172T	ENST00000358487	NM_000141.4	172	Gcc/Acc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720712	89720712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	21	79	0	ENST00000371953.3:c.867del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	288	gAa/ga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	99	379	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
RET	5979	MSKCC	GRCh37	10	43606814	43606814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	149	566	0	ENST00000355710.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000355710	NM_020975.4	475	Cgg/Tgg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	247	20	2	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884218	37884218	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	117	464	0	ENST00000269571.5:c.3694delG	p.Ala1232LeufsTer70	p.A1232Lfs*70	ENST00000269571		1230	cGg/cg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	97	373	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137832	64137832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	212	671	1	ENST00000334205.4:c.1933G>A	p.Glu645Lys	p.E645K	ENST00000334205	NM_003942.2	645	Gag/Aag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023186	31023186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	110	591	0	ENST00000375687.4:c.2671G>A	p.Val891Ile	p.V891I	ENST00000375687	NM_015338.5	891	Gtt/Att																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345769	152345769	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	12	266	0	ENST00000359321.1:c.801del	p.Lys267AsnfsTer30	p.K267Nfs*30	ENST00000359321	NM_005431.1	267	aaA/aa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061219	38061219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	25	395	0	ENST00000250448.2:c.770G>A	p.Gly257Asp	p.G257D	ENST00000250448	NM_004496.3	257	gGc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101086	41101086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	141	398	0	ENST00000373198.4:c.1270G>A	p.Val424Met	p.V424M	ENST00000373198	NM_133170.3	424	Gtg/Atg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123276958	123276958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	90	268	0	ENST00000358487.5:c.959C>T	p.Thr320Met	p.T320M	ENST00000358487	NM_000141.4	320	aCg/aTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786734	3786734	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	154	491	0	ENST00000262367.5:c.4477del	p.Ile1493TyrfsTer57	p.I1493Yfs*57	ENST00000262367	NM_004380.2	1493	Ata/ta																																																																														
DICER1	23405	MSKCC	GRCh37	14	95596408	95596408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	54	329	0	ENST00000343455.3:c.560G>A	p.Arg187Gln	p.R187Q	ENST00000343455	NM_177438.2	187	cGa/cAa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	216	646	4	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	40	555	6	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	150	451	2	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	188	605	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	159	503	2	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576819	67576819	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	59	322	0	ENST00000274335.5:c.901C>T	p.Arg301Ter	p.R301*	ENST00000274335		301	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934531	9934531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	26	332	0	ENST00000330684.3:c.1624G>A	p.Gly542Ser	p.G542S	ENST00000330684	NM_001134407.1	542	Ggc/Agc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258944	16258944	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	156	650	0	ENST00000375759.3:c.6215delA	p.Asn2072ThrfsTer14	p.N2072Tfs*14	ENST00000375759	NM_015001.2	2070	gAa/ga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231215	98231215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	155	467	0	ENST00000331920.6:c.2068G>A	p.Val690Ile	p.V690I	ENST00000331920	NM_000264.3	690	Gtc/Atc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400267	139400267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	141	513	0	ENST00000277541.6:c.4081G>A	p.Gly1361Ser	p.G1361S	ENST00000277541	NM_017617.3	1361	Ggc/Agc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741678	17741678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	30	294	0	ENST00000250003.3:c.349C>T	p.Arg117Cys	p.R117C	ENST00000250003	NM_002478.4	117	Cgc/Tgc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435774	110435774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	83	97	0	ENST00000375856.3:c.2627G>A	p.Arg876His	p.R876H	ENST00000375856	NM_003749.2	876	cGc/cAc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981921	70981921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	190	514	1	ENST00000276594.2:c.175G>A	p.Ala59Thr	p.A59T	ENST00000276594	NM_024504.3	59	Gca/Aca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15280905	15280905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	168	468	0	ENST00000263388.2:c.5191C>T	p.Arg1731Trp	p.R1731W	ENST00000263388	NM_000435.2	1731	Cgg/Tgg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560482	95560482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	110	366	0	ENST00000343455.3:c.5107C>T	p.Arg1703Cys	p.R1703C	ENST00000343455	NM_177438.2	1703	Cgc/Tgc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527703	157527703	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	208	458	0	ENST00000346085.5:c.5428C>T	p.Gln1810Ter	p.Q1810*	ENST00000346085	NM_020732.3	1810	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259062	16259063	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	127	456	0	ENST00000375759.3:c.6331dup	p.Glu2111GlyfsTer12	p.E2111Gfs*12	ENST00000375759	NM_015001.2	2109	-/G																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429279	78429279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	78	351	0	ENST00000370768.2:c.1163C>T	p.Thr388Ile	p.T388I	ENST00000370768	NM_003902.3	388	aCt/aTt																																																																														
TET1	80312	MSKCC	GRCh37	10	70451273	70451273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	192	548	0	ENST00000373644.4:c.6113G>A	p.Arg2038His	p.R2038H	ENST00000373644	NM_030625.2	2038	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692838	89692839	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	30	161	0	ENST00000371953.3:c.324dup	p.Asp109Ter	p.D109*	ENST00000371953	NM_000314.4	108	ctt/cTtt																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156651	2156651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	161	504	0	ENST00000434045.2:c.271G>A	p.Gly91Arg	p.G91R	ENST00000434045	NM_001127598.1	91	Ggg/Agg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625162	69625162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	146	519	0	ENST00000334134.2:c.631C>T	p.Arg211Trp	p.R211W	ENST00000334134	NM_005247.2	211	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108170528	108170528	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	16	434	1	ENST00000278616.4:c.5093A>G	p.Lys1698Arg	p.K1698R	ENST00000278616	NM_000051.3	1698	aAg/aGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427023	49427023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	108	400	0	ENST00000301067.7:c.11465G>A	p.Gly3822Asp	p.G3822D	ENST00000301067	NM_003482.3	3822	gGc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431178	49431178	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	176	470	0	ENST00000301067.7:c.9961C>T	p.Arg3321Ter	p.R3321*	ENST00000301067	NM_003482.3	3321	Cga/Tga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120819	115120819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	77	364	0	ENST00000257566.3:c.187C>G	p.Pro63Ala	p.P63A	ENST00000257566	NM_016569.3	63	Ccg/Gcg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609813	81609813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	109	261	0	ENST00000298171.2:c.1411G>A	p.Ala471Thr	p.A471T	ENST00000298171	NM_000369.2	471	Gcc/Acc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569939	95569939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	87	327	0	ENST00000343455.3:c.3794C>T	p.Thr1265Ile	p.T1265I	ENST00000343455	NM_177438.2	1265	aCa/aTa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643536	38643536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	83	530	0	ENST00000299084.4:c.1006G>A	p.Val336Ile	p.V336I	ENST00000299084	NM_152594.2	336	Gta/Ata																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423659	88423659	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	50	294	0	ENST00000360948.2:c.2176G>A	p.Val726Met	p.V726M	ENST00000360948	NM_001012338.2	726	Gtg/Atg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136268	2136268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	177	505	0	ENST00000219476.3:c.4738del	p.Arg1580GlyfsTer5	p.R1580Gfs*5	ENST00000219476	NM_000548.3	1579	ggC/gg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81968056	81968058	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	102	374	0	ENST00000359376.3:c.2766_2768del	p.Lys922del	p.K922del	ENST00000359376	NM_002661.3	921	gAGAag/gag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81968074	81968074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	129	426	0	ENST00000359376.3:c.2780C>T	p.Ala927Val	p.A927V	ENST00000359376	NM_002661.3	927	gCc/gTc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17127351	17127351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	194	527	1	ENST00000285071.4:c.503G>A	p.Arg168His	p.R168H	ENST00000285071	NM_144997.5	168	cGc/cAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883114	37883114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	172	551	1	ENST00000269571.5:c.3017G>A	p.Arg1006His	p.R1006H	ENST00000269571		1006	cGc/cAc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40364003	40364003	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	255	689	0	ENST00000293328.3:c.1679G>T	p.Arg560Met	p.R560M	ENST00000293328	NM_012448.3	560	aGg/aTg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221243	1221243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	160	524	0	ENST00000326873.7:c.766G>C	p.Glu256Gln	p.E256Q	ENST00000326873	NM_000455.4	256	Gaa/Caa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220901	36220901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	193	50	0	ENST00000222270.7:c.4951G>A	p.Val1651Met	p.V1651M	ENST00000222270	NM_014727.1	1651	Gtg/Atg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856394	45856394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	236	503	1	ENST00000391945.4:c.1778G>A	p.Gly593Glu	p.G593E	ENST00000391945	NM_000400.3	593	gGg/gAg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867013	45867013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	102	392	2	ENST00000391945.4:c.1106G>A	p.Arg369His	p.R369H	ENST00000391945	NM_000400.3	369	cGc/cAc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693886	47693886	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	68	415	0	ENST00000233146.2:c.1600del	p.Arg534ValfsTer9	p.R534Vfs*9	ENST00000233146	NM_000251.2	534	Cgt/gt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47709917	47709917	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	308	62	0	ENST00000233146.2:c.2635-1G>C		p.X879_splice	ENST00000233146	NM_000251.2	879																																																																															
MSH6	2956	MSKCC	GRCh37	2	48023050	48023050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	70	294	0	ENST00000234420.5:c.475G>A	p.Ala159Thr	p.A159T	ENST00000234420	NM_000179.2	159	Gcc/Acc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660400	227660400	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	104	379	0	ENST00000305123.5:c.3055A>T	p.Ile1019Phe	p.I1019F	ENST00000305123	NM_005544.2	1019	Att/Ttt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024162	31024162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	163	513	0	ENST00000375687.4:c.3647T>C	p.Val1216Ala	p.V1216A	ENST00000375687	NM_015338.5	1216	gTg/gCg																																																																														
ERG	2078	MSKCC	GRCh37	21	39763604	39763605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	74	304	0	ENST00000288319.7:c.847dup	p.Thr283AsnfsTer2	p.T283Nfs*2	ENST00000288319	NM_182918.3	283	act/aAct																																																																														
RAF1	5894	MSKCC	GRCh37	3	12660103	12660103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	93	422	2	ENST00000251849.4:c.118C>T	p.Arg40Cys	p.R40C	ENST00000251849	NM_002880.3	40	Cgc/Tgc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098880	47098880	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	134	567	0	ENST00000409792.3:c.6394C>G	p.Arg2132Gly	p.R2132G	ENST00000409792	NM_014159.6	2132	Cgg/Ggg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49939853	49939853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	271	623	1	ENST00000296474.3:c.1190G>A	p.Gly397Asp	p.G397D	ENST00000296474	NM_002447.2	397	gGc/gAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521703	89521703	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	106	356	0	ENST00000336596.2:c.2780A>G	p.His927Arg	p.H927R	ENST00000336596	NM_005233.5	927	cAc/cGc																																																																														
TP63	8626	MSKCC	GRCh37	3	189526074	189526074	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	143	370	0	ENST00000264731.3:c.338A>T	p.Asn113Ile	p.N113I	ENST00000264731	NM_003722.4	113	aAc/aTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541754	187541754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147571313		P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	87	317	0	ENST00000441802.2:c.5986G>A	p.Glu1996Lys	p.E1996K	ENST00000441802	NM_005245.3	1996	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1254486	1254486	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	110	492	0	ENST00000310581.5:c.3292A>G	p.Thr1098Ala	p.T1098A	ENST00000310581	NM_198253.2	1098	Aca/Gca																																																																														
APC	324	MSKCC	GRCh37	5	112177907	112177907	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	315	14	0	ENST00000257430.4:c.6616A>G	p.Asn2206Asp	p.N2206D	ENST00000257430	NM_000038.5	2206	Aat/Gat																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435636	149435636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	134	507	0	ENST00000286301.3:c.2507G>A	p.Ser836Asn	p.S836N	ENST00000286301	NM_005211.3	836	aGc/aAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709464	176709464	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	40	310	0	ENST00000439151.2:c.5893-2A>G		p.X1965_splice	ENST00000439151	NM_022455.4	1965																																																																															
HIST1H3I	8354	MSKCC	GRCh37	6	27839812	27839812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	178	450	0	ENST00000328488.2:c.282G>T	p.Gln94His	p.Q94H	ENST00000328488	NM_003533.2	94	caG/caT																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026810	6026810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	93	285	0	ENST00000265849.7:c.1586C>T	p.Ser529Leu	p.S529L	ENST00000265849	NM_000535.5	529	tCg/tTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128843381	128843381	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	130	476	0	ENST00000249373.3:c.488G>C	p.Trp163Ser	p.W163S	ENST00000249373	NM_005631.4	163	tGg/tCg																																																																														
MYC	4609	MSKCC	GRCh37	8	128752956	128752956	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	134	359	1	ENST00000377970.2:c.1117A>G	p.Thr373Ala	p.T373A	ENST00000377970	NM_002467.4	373	Aca/Gca																																																																														
SYK	6850	MSKCC	GRCh37	9	93639896	93639896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	19	253	0	ENST00000375746.1:c.1225A>G	p.Asn409Asp	p.N409D	ENST00000375746	NM_001174167.1	409	Aat/Gat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781133	135781133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	120	451	1	ENST00000298552.3:c.1832C>T	p.Ala611Val	p.A611V	ENST00000298552	NM_001162426.1	611	gCa/gTa																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139563052	139563052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	148	491	0	ENST00000308874.7:c.124G>C	p.Glu42Gln	p.E42Q	ENST00000308874		42	Gag/Cag																																																																														
MED12	9968	MSKCC	GRCh37	X	70342382	70342382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	169	467	0	ENST00000374080.3:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000374080		425	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76849172	76849173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	42	329	0	ENST00000373344.5:c.6103dup	p.Asp2035GlyfsTer2	p.D2035Gfs*2	ENST00000373344	NM_000489.3	2035	gat/gGat																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780224	9780224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	92	499	4	ENST00000377346.4:c.1394C>T	p.Thr465Met	p.T465M	ENST00000377346	NM_005026.3	465	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	GA			P-0031579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	390	195	0	ENST00000256078.4:c.182_183delinsTC	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTC																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68758619	68758619	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	166	380	0	ENST00000487270.1:c.775A>T	p.Ile259Phe	p.I259F	ENST00000487270	NM_133509.3	259	Att/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	306	493	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0031579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	122	228	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	360	530	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	174	358	0	ENST00000358487.5:c.1647T>G	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419951	41419951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	268	451	0	ENST00000373198.4:c.370G>A	p.Val124Met	p.V124M	ENST00000373198	NM_133170.3	124	Gtg/Atg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028790	47028790	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	205	273	0	ENST00000329236.7:c.94C>T	p.Arg32Ter	p.R32*	ENST00000329236	NM_001204466.1	32	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70339230	70339230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	269	268	0	ENST00000374080.3:c.107T>C	p.Leu36Pro	p.L36P	ENST00000374080		36	cTg/cCg																																																																														
FH	2271	MSKCC	GRCh37	1	241672078	241672078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	73	232	0	ENST00000366560.3:c.563A>G	p.Asn188Ser	p.N188S	ENST00000366560	NM_000143.3	188	aAt/aGt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106049	8106049	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	287	439	0	ENST00000346208.3:c.869A>G	p.Tyr290Cys	p.Y290C	ENST00000346208		290	tAt/tGt																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724795	112724795	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	73	237	0	ENST00000369452.4:c.679A>G	p.Ile227Val	p.I227V	ENST00000369452	NM_007373.3	227	Att/Gtt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15942902	15942904	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0031662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	376	182	0	ENST00000268712.3:c.6798_6800del	p.Ile2267del	p.I2267del	ENST00000268712	NM_006311.3	2266	atTATc/atc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026555	48026555	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	338	94	0	ENST00000234420.5:c.1433A>G	p.Tyr478Cys	p.Y478C	ENST00000234420	NM_000179.2	478	tAt/tGt																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839738	27839738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	170	418	0	ENST00000328488.2:c.356C>G	p.Thr119Ser	p.T119S	ENST00000328488	NM_003533.2	119	aCt/aGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942035	44942035	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	85	147	0	ENST00000377967.4:c.3284+1G>A		p.X1095_splice	ENST00000377967	NM_021140.2	1095																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	193	474	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	246	282	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	405	193	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729875	30729875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0032128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	207	248	0	ENST00000359013.4:c.1472-1G>C		p.X491_splice	ENST00000359013	NM_001024847.2	491																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260150	149260150	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	170	394	0	ENST00000360632.3:c.743G>C	p.Arg248Pro	p.R248P	ENST00000360632	NM_015472.4	248	cGa/cCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	20	258	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	24	164	2	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	546	406	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37673787	37673787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	71	400	1	ENST00000447079.4:c.2941C>T	p.Arg981Cys	p.R981C	ENST00000447079	NM_015083.1	981	Cgt/Tgt																																																																														
AKT2	208	MSKCC	GRCh37	19	40762839	40762839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	50	182	2	ENST00000392038.2:c.169G>A	p.Val57Ile	p.V57I	ENST00000392038	NM_001626.4	57	Gta/Ata																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870961	12870962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	21	123	0	ENST00000228872.4:c.192dup	p.Gln65SerfsTer60	p.Q65Sfs*60	ENST00000228872	NM_004064.3	63	gat/gaTt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954957	2954957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	79	375	0	ENST00000396946.4:c.2753G>A	p.Arg918Gln	p.R918Q	ENST00000396946	NM_032415.4	918	cGg/cAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	18	183	0	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	68	296	1	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425810	49425812	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	47	266	0	ENST00000301067.7:c.12676_12678del	p.Leu4226del	p.L4226del	ENST00000301067	NM_003482.3	4226	CTC/-																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56477621	56477621	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	67	336	0	ENST00000267101.3:c.169G>C	p.Glu57Gln	p.E57Q	ENST00000267101	NM_001982.3	57	Gag/Cag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861257	57861257	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	43	248	0	ENST00000228682.2:c.1054C>T	p.Gln352Ter	p.Q352*	ENST00000228682	NM_005269.2	352	Cag/Tag																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134239	41134239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	25	214	0	ENST00000379561.5:c.1389G>T	p.Lys463Asn	p.K463N	ENST00000379561	NM_002015.3	463	aaG/aaT																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2089994	2089994	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	90	406	0	ENST00000219066.1:c.870T>A	p.Cys290Ter	p.C290*	ENST00000219066	NM_002528.5	290	tgT/tgA																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2224050	2224050	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	65	302	0	ENST00000326181.6:c.1263+1G>A		p.X421_splice	ENST00000326181	NM_032271.2	421																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351136	89351136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	78	288	0	ENST00000301030.4:c.1814C>T	p.Ser605Leu	p.S605L	ENST00000301030	NM_001256183.1	605	tCg/tTg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032514	12032514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	38	209	0	ENST00000353533.5:c.950T>C	p.Leu317Pro	p.L317P	ENST00000353533	NM_003010.3	317	cTa/cCa																																																																														
ATR	545	MSKCC	GRCh37	3	142281383	142281383	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	106	353	0	ENST00000350721.4:c.861A>C	p.Gln287His	p.Q287H	ENST00000350721	NM_001184.3	287	caA/caC																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672770	86672770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	196	13	0	ENST00000274376.6:c.2257G>A	p.Ala753Thr	p.A753T	ENST00000274376	NM_002890.2	753	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112179821	112179821	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	82	13	0	ENST00000257430.4:c.8530T>G	p.Ter2844GluextTer27	p.*2844Eext*27	ENST00000257430	NM_000038.5	2844	Taa/Gaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249008	55249009	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	63	200	0	ENST00000275493.2:c.2308_2309insGGG	p.Val769_Asp770insGly	p.V769_D770insG	ENST00000275493	NM_005228.3	769	gtg/gtGGGg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151847985	151847985	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	27	160	0	ENST00000262189.6:c.12774G>T	p.Lys4258Asn	p.K4258N	ENST00000262189	NM_170606.2	4258	aaG/aaT																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814756	139814756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	58	262	1	ENST00000247668.2:c.749C>T	p.Ser250Leu	p.S250L	ENST00000247668	NM_021138.3	250	tCg/tTg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321316	1321316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	43	201	0	ENST00000381566.1:c.439C>A	p.Leu147Ile	p.L147I	ENST00000381566		147	Ctc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	327	417	0	ENST00000269305.4:c.614A>C	p.Tyr205Ser	p.Y205S	ENST00000269305	NM_001126112.2	205	tAt/tCt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685309	89685309	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	75	220	0	ENST00000371953.3:c.204C>A	p.Tyr68Ter	p.Y68*	ENST00000371953	NM_000314.4	68	taC/taA																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38631998	38631998	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	160	405	0	ENST00000299084.4:c.484G>C	p.Val162Leu	p.V162L	ENST00000299084	NM_152594.2	162	Gtt/Ctt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15989705	15989706	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0032618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	242	272	0	ENST00000268712.3:c.3067_3068del	p.Arg1023AlafsTer47	p.R1023Afs*47	ENST00000268712	NM_006311.3	1023	CGg/g																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52677360	52677360	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0032618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	119	305	0	ENST00000394830.3:c.900-1G>C		p.X300_splice	ENST00000394830	NM_018313.4	300																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467402	66467402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	103	209	0	ENST00000273854.3:c.867C>A	p.Cys289Ter	p.C289*	ENST00000273854	NM_004439.5	289	tgC/tgA																																																																														
MSH3	4437	MSKCC	GRCh37	5	79974854	79974854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	42	375	0	ENST00000265081.6:c.1282C>T	p.Leu428Phe	p.L428F	ENST00000265081	NM_002439.4	428	Ctt/Ttt																																																																														
APC	324	MSKCC	GRCh37	5	112174189	112174190	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTCAGTAG			P-0032618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	79	260	0	ENST00000257430.4:c.2899_2906dup	p.Ser969ArgfsTer14	p.S969Rfs*14	ENST00000257430	NM_000038.5	966	-/GTCAGTAG																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38162159	38162159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	33	330	0	ENST00000317025.8:c.2557C>T	p.Arg853Trp	p.R853W	ENST00000317025	NM_023034.1	853	Cgg/Tgg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090497	5090497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	44	162	0	ENST00000381652.3:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000381652	NM_004972.3	938	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0032621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	105	314	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	16	198	1	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0032621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	333	665	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575149	48575149	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	113	188	0	ENST00000342988.3:c.343T>A	p.Cys115Ser	p.C115S	ENST00000342988	NM_005359.5	115	Tgt/Agt																																																																														
KDR	3791	MSKCC	GRCh37	4	55970902	55970902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	187	391	0	ENST00000263923.4:c.1895C>A	p.Ala632Glu	p.A632E	ENST00000263923	NM_002253.2	632	gCa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112164584	112164584	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	162	178	0	ENST00000257430.4:c.1658G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tGg/tAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0032622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	15	26	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0032622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	94	309	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	75	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	180	686	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574348	41574348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	455	102	0	ENST00000263253.7:c.6633C>A	p.Phe2211Leu	p.F2211L	ENST00000263253	NM_001429.3	2211	ttC/ttA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32905134	32905134	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	77	319	0	ENST00000380152.3:c.760G>T	p.Glu254Ter	p.E254*	ENST00000380152		254	Gaa/Taa																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2089926	2089926	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0032638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	106	365	0	ENST00000219066.1:c.938G>C	p.Ter313SerextTer?	p.*313Sext*?	ENST00000219066	NM_002528.5	313	tGa/tCa																																																																														
APC	324	MSKCC	GRCh37	5	112102912	112102939	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGGAGTAAAACTGCGGTCAAAAATGT	CCTGGAGTAAAACTGCGGTCAAAAATGT	-			P-0032638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	49	207	0	ENST00000257430.4:c.249_276del	p.Gly84SerfsTer32	p.G84Sfs*32	ENST00000257430	NM_000038.5	83	CCTGGAGTAAAACTGCGGTCAAAAATGTcc/cc																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564645	139564645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	190	667	2	ENST00000308874.7:c.434G>T	p.Arg145Met	p.R145M	ENST00000308874		145	aGg/aTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584436	52584436	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	98	326	0	ENST00000394830.3:c.4576+1G>T		p.X1526_splice	ENST00000394830	NM_018313.4	1526																																																																															
TSC2	7249	MSKCC	GRCh37	16	2124336	2124336	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	112	314	0	ENST00000219476.3:c.2491A>C	p.Thr831Pro	p.T831P	ENST00000219476	NM_000548.3	831	Acg/Ccg																																																																														
NF1	4763	MSKCC	GRCh37	17	29486107	29486107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	128	135	0	ENST00000358273.4:c.284C>T	p.Ala95Val	p.A95V	ENST00000358273	NM_001042492.2	95	gCt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0033157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	32	217	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933521	36933521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	20	194	0	ENST00000361632.4:c.1766G>T	p.Gly589Val	p.G589V	ENST00000361632		589	gGc/gTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246205	41246220	+	frameshift_variant	Frame_Shift_Del	DEL	TGAACTCTTTCACTTT	TGAACTCTTTCACTTT	-			P-0033157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	39	223	0	ENST00000357654.3:c.1328_1343del	p.Lys443ThrfsTer5	p.K443Tfs*5	ENST00000357654	NM_007294.3	443	aAAAGTGAAAGAGTTCAc/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	50	178	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	46	125	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
AXL	558	MSKCC	GRCh37	19	41765694	41765694	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61737385		P-0033518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	63	215	2	ENST00000301178.4:c.2570C>T	p.Ala857Val	p.A857V	ENST00000301178	NM_021913.4	857	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	528	418	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0033608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	77	103	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	47	153	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445091	89445091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	54	175	0	ENST00000336596.2:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000336596	NM_005233.5	471	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100975	41100975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	481	337	1	ENST00000373198.4:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000373198	NM_133170.3	461	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	528	341	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871758	12871758	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0033652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	77	59	0	ENST00000228872.4:c.476-1G>T		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																															
CARD11	84433	MSKCC	GRCh37	7	2957003	2957003	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	270	194	0	ENST00000396946.4:c.2624A>G	p.Glu875Gly	p.E875G	ENST00000396946	NM_032415.4	875	gAa/gGa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508277	106508277	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	55	164	0	ENST00000359195.3:c.271C>G	p.Leu91Val	p.L91V	ENST00000359195	NM_002649.2	91	Ctg/Gtg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229024	36229024	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	102	286	0	ENST00000222270.7:c.7804A>G	p.Ile2602Val	p.I2602V	ENST00000222270	NM_014727.1	2602	Atc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	109	353	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	72	146	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0034614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	78	301	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952093	178952093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	70	147	0	ENST00000263967.3:c.3148G>A	p.Gly1050Ser	p.G1050S	ENST00000263967	NM_006218.2	1050	Ggc/Agc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589019	67589020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	33	104	0	ENST00000274335.5:c.1111dupA	p.Thr371AsnfsTer8	p.T371Nfs*8	ENST00000274335		370	-/A																																																																														
ATM	472	MSKCC	GRCh37	11	108203559	108203588	+	inframe_deletion	In_Frame_Del	DEL	TTGAGGCACTTTGTGATGCTTATATTATAT	TTGAGGCACTTTGTGATGCTTATATTATAT	-			P-0034784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	70	325	0	ENST00000278616.4:c.7860_7889del	p.Glu2621_Leu2630del	p.E2621_L2630del	ENST00000278616	NM_000051.3	2620	gTTGAGGCACTTTGTGATGCTTATATTATATta/gta																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30322658	30322658	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0034784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	82	401	0	ENST00000322652.5:c.1671T>A	p.Tyr557Ter	p.Y557*	ENST00000322652	NM_015355.2	557	taT/taA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878118	151878119	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0034784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	105	350	0	ENST00000262189.6:c.6826_6827del	p.Pro2276Ter	p.P2276*	ENST00000262189	NM_170606.2	2276	CCt/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	340	582	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330639	65330639	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	125	354	1	ENST00000342505.4:c.1007del	p.Lys336ArgfsTer6	p.K336Rfs*6	ENST00000342505	NM_002227.2	336	aAg/ag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907186	32907187	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0034885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	99	306	0	ENST00000380152.3:c.1571_1572delinsAT	p.Met524Asn	p.M524N	ENST00000380152		524	aTG/aAT																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066795	30066795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	150	464	0	ENST00000331968.5:c.2336G>T	p.Gly779Val	p.G779V	ENST00000331968	NM_002742.2	779	gGc/gTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633498	3633498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	182	619	0	ENST00000294008.3:c.4753C>A	p.Pro1585Thr	p.P1585T	ENST00000294008	NM_032444.2	1585	Cct/Act																																																																														
NF1	4763	MSKCC	GRCh37	17	29664850	29664851	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0034885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	261	297	0	ENST00000358273.4:c.6658_6659del	p.Ile2220SerfsTer21	p.I2220Sfs*21	ENST00000358273	NM_001042492.2	2219	gAT/g																																																																														
INSR	3643	MSKCC	GRCh37	19	7184471	7184471	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	332	618	0	ENST00000302850.5:c.830A>G	p.Asp277Gly	p.D277G	ENST00000302850	NM_000208.2	277	gAc/gGc																																																																														
KDR	3791	MSKCC	GRCh37	4	55963885	55963885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	166	465	0	ENST00000263923.4:c.2558C>A	p.Ala853Asp	p.A853D	ENST00000263923	NM_002253.2	853	gCc/gAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530329	187530346	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCACTTACCGTTTCTCGG	TCACTTACCGTTTCTCGG	-			P-0034885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	115	245	0	ENST00000441802.2:c.10197_10206+8del		p.X3399_splice	ENST00000441802	NM_005245.3	3399																																																																															
IDH2	3418	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	71	519	0	ENST00000330062.3:c.514A>T	p.Arg172Trp	p.R172W	ENST00000330062	NM_002168.2	172	Agg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0035740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	577	480	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	162	230	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	189	237	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857833	9857833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	67	419	0	ENST00000330684.3:c.3568C>T	p.His1190Tyr	p.H1190Y	ENST00000330684	NM_001134407.1	1190	Cac/Tac																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197399	26197399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	139	232	0	ENST00000356476.2:c.80G>C	p.Arg27Pro	p.R27P	ENST00000356476		27	cGa/cCa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131978054	131978055	+	frameshift_variant,stop_retained_variant	Frame_Shift_Ins	INS	-	-	A			P-0035740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	314	146	0	ENST00000265335.6:c.*3dup		p.*1313fs	ENST00000265335		1313	taa/tAaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508713	106508713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	211	318	0	ENST00000359195.3:c.707C>T	p.Ser236Leu	p.S236L	ENST00000359195	NM_002649.2	236	tCa/tTa																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944734	31944734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	28	48	0	ENST00000340398.3:c.367G>C	p.Asp123His	p.D123H	ENST00000340398	NM_001013699.2	123	Gac/Cac																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323001	31323001	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0035741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	589	300	0	ENST00000412585.2:c.896-1G>C		p.X299_splice	ENST00000412585	NM_005514.6	299																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44969477	44969480	+	frameshift_variant	Frame_Shift_Del	DEL	TATG	TATG	-			P-0035741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	95	290	0	ENST00000377967.4:c.4159_4162del	p.Tyr1387ThrfsTer5	p.Y1387Tfs*5	ENST00000377967	NM_021140.2	1387	TATGac/ac																																																																														
VHL	7428	MSKCC	GRCh37	3	10183867	10183867	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	176	243	1	ENST00000256474.2:c.336C>A	p.Tyr112Ter	p.Y112*	ENST00000256474	NM_000551.3	112	taC/taA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720732	89720732	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	11	105	0	ENST00000371953.3:c.883del	p.Leu295TyrfsTer12	p.L295Yfs*12	ENST00000371953	NM_000314.4	295	Cta/ta																																																																														
FLCN	201163	MSKCC	GRCh37	17	17122367	17122367	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	250	142	0	ENST00000285071.4:c.1028T>C	p.Leu343Pro	p.L343P	ENST00000285071	NM_144997.5	343	cTg/cCg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45871987	45871988	+	missense_variant	Missense_Mutation	DNP	AA	AA	TT			P-0035744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	159	324	0	ENST00000391945.4:c.260_261inv	p.Leu87Gln	p.L87Q	ENST00000391945	NM_000400.3	87	cTT/cAA																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270535	98270535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	166	62	0	ENST00000331920.6:c.109G>T	p.Gly37Trp	p.G37W	ENST00000331920	NM_000264.3	37	Ggg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	32	225	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0036098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	47	374	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004922	150004922	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	38	325	0	ENST00000253339.5:c.1303C>T	p.Gln435Ter	p.Q435*	ENST00000253339		435	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541913	187541913	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	59	366	0	ENST00000441802.2:c.5827C>T	p.Gln1943Ter	p.Q1943*	ENST00000441802	NM_005245.3	1943	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247247	153247247	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	39	267	0	ENST00000281708.4:c.1555T>G	p.Tyr519Asp	p.Y519D	ENST00000281708	NM_033632.3	519	Tat/Gat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808856	3808856	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0036098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	45	302	0	ENST00000262367.5:c.3368del	p.Pro1123GlnfsTer7	p.P1123Qfs*7	ENST00000262367	NM_004380.2	1123	cCa/ca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845880	151845880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	80	475	0	ENST00000262189.6:c.13132G>A	p.Glu4378Lys	p.E4378K	ENST00000262189	NM_170606.2	4378	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	127	389	0	ENST00000269305.4:c.1010G>C	p.Arg337Pro	p.R337P	ENST00000269305	NM_001126112.2	337	cGc/cCc																																																																														
APC	324	MSKCC	GRCh37	5	112151291	112151291	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0036576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	35	114	0	ENST00000257430.4:c.933+1G>A		p.X311_splice	ENST00000257430	NM_000038.5	311																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71942599	71942599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	108	267	0	ENST00000298229.2:c.1555G>A	p.Glu519Lys	p.E519K	ENST00000298229	NM_001567.3	519	Gag/Aag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515418	103515418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	14	103	0	ENST00000355739.4:c.1919C>T	p.Pro640Leu	p.P640L	ENST00000355739	NM_000123.3	640	cCa/cTa																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750403	41750403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	209	33	0	ENST00000226382.2:c.225C>A	p.Ser75Arg	p.S75R	ENST00000226382	NM_003924.3	75	agC/agA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	126	466	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593268	67593268	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TTGTT			P-0036670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	20	538	0	ENST00000274335.5:c.2014delinsTTGTT	p.Ile672LeufsTer16	p.I672Lfs*16	ENST00000274335		672	Ata/TTGTTta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0036673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	294	892	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105594	27105607	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGGGTGACCCAG	GGTGGGTGACCCAG	-			P-0036673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	205	685	0	ENST00000324856.7:c.5206_5219del	p.Val1736ThrfsTer15	p.V1736Tfs*15	ENST00000324856	NM_006015.4	1735	gaGGTGGGTGACCCAGga/gaga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299072	15299072	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	261	786	0	ENST00000263388.2:c.1466A>G	p.Asn489Ser	p.N489S	ENST00000263388	NM_000435.2	489	aAt/aGt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469071	25469071	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	376	1180	0	ENST00000264709.3:c.1387G>C	p.Glu463Gln	p.E463Q	ENST00000264709	NM_175629.2	463	Gag/Cag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838096	89838096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	19	191	0	ENST00000389301.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000389301	NM_000135.2	714	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578381	7578431	+	inframe_deletion	In_Frame_Del	DEL	TGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTG	TGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTG	-			P-0036674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	33	224	0	ENST00000269305.4:c.499_549del	p.Gln167_Ser183del	p.Q167_S183del	ENST00000269305	NM_001126112.2	167	CAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	470	523	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	824	464	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	292	349	0	ENST00000374080.3:c.130G>C	p.Gly44Arg	p.G44R	ENST00000374080		44	Ggt/Cgt																																																																														
AKT1	207	MSKCC	GRCh37	14	105239300	105239300	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	433	387	0	ENST00000349310.3:c.1087A>G	p.Met363Val	p.M363V	ENST00000349310	NM_001014432.1	363	Atg/Gtg																																																																														
ATRX	546	MSKCC	GRCh37	X	76855028	76855029	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0036751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	341	255	0	ENST00000373344.5:c.5807_5808del	p.Lys1936ArgfsTer5	p.K1936Rfs*5	ENST00000373344	NM_000489.3	1936	aAG/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	326	946	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
APC	324	MSKCC	GRCh37	5	112175346	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAA	TTGAA	-			P-0038188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	89	399	0	ENST00000257430.4:c.4057_4061del	p.Glu1353PhefsTer20	p.E1353Ffs*20	ENST00000257430	NM_000038.5	1352	gTTGAA/g																																																																														
HGF	3082	MSKCC	GRCh37	7	81355325	81355325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	31	338	0	ENST00000222390.5:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000222390	NM_000601.4	350	cGa/cAa																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39317393	39317393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	87	745	1	ENST00000373001.3:c.793G>T	p.Val265Phe	p.V265F	ENST00000373001	NM_022157.3	265	Gtc/Ttc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554724	63554725	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAG			P-0038188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	201	647	0	ENST00000307078.5:c.11_14dup	p.Met5IlefsTer16	p.M5Ifs*16	ENST00000307078	NM_004655.3	5	atg/atCTATg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62293296	62293296	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	349	611	1	ENST00000508582.2:c.395G>A	p.Arg132His	p.R132H	ENST00000508582		132	cGc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937011	76937011	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0038188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	26	379	0	ENST00000373344.5:c.3736+1G>T		p.X1246_splice	ENST00000373344	NM_000489.3	1246																																																																															
ATM	472	MSKCC	GRCh37	11	108224498	108224498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	38	176	0	ENST00000278616.4:c.8677G>C	p.Ala2893Pro	p.A2893P	ENST00000278616	NM_000051.3	2893	Gct/Cct																																																																														
HGF	3082	MSKCC	GRCh37	7	81336625	81336625	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	22	170	0	ENST00000222390.5:c.1597C>T	p.Arg533Ter	p.R533*	ENST00000222390	NM_000601.4	533	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	28	101	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0038533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	39	131	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0038533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	98	261	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
APC	324	MSKCC	GRCh37	5	112175759	112175759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	30	62	0	ENST00000257430.4:c.4468del	p.His1490IlefsTer17	p.H1490Ifs*17	ENST00000257430	NM_000038.5	1490	Cat/at																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575148	48575148	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	27	84	0	ENST00000342988.3:c.342T>A	p.Tyr114Ter	p.Y114*	ENST00000342988	NM_005359.5	114	taT/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	26	222	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	15	283	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	72	547	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0038546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	10	258	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819605	81819605	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199972098		P-0038546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	16	379	1	ENST00000359376.3:c.11C>T	p.Thr4Met	p.T4M	ENST00000359376	NM_002661.3	4	aCg/aTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11313971	11313971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	26	502	0	ENST00000361445.4:c.765G>A	p.Met255Ile	p.M255I	ENST00000361445	NM_004958.3	255	atG/atA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	43	391	0	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68849586	68849586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	41	277	0	ENST00000261769.5:c.1489G>A	p.Glu497Lys	p.E497K	ENST00000261769	NM_004360.3	497	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420076	49420076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	51	288	0	ENST00000301067.7:c.15673C>T	p.Arg5225Cys	p.R5225C	ENST00000301067	NM_003482.3	5225	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420098	49420098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	50	269	0	ENST00000301067.7:c.15651G>T	p.Trp5217Cys	p.W5217C	ENST00000301067	NM_003482.3	5217	tgG/tgT																																																																														
MED12	9968	MSKCC	GRCh37	X	70349942	70349942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	61	399	0	ENST00000374080.3:c.3925G>A	p.Asp1309Asn	p.D1309N	ENST00000374080		1309	Gac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	262	490	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	223	662	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	35	63	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	12	32	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	94	134	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006224	22006224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	93	134	0	ENST00000276925.6:c.179G>A	p.Arg60His	p.R60H	ENST00000276925	NM_004936.3	60	cGc/cAc																																																																														
BLM	641	MSKCC	GRCh37	15	91304295	91304295	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	21	37	0	ENST00000355112.3:c.1692T>G	p.Asp564Glu	p.D564E	ENST00000355112	NM_000057.2	564	gaT/gaG																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222235	2222235	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	161	260	0	ENST00000326181.6:c.519C>A	p.Asn173Lys	p.N173K	ENST00000326181	NM_032271.2	173	aaC/aaA																																																																														
CDH1	999	MSKCC	GRCh37	16	68835704	68835704	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	86	135	0	ENST00000261769.5:c.295T>G	p.Leu99Val	p.L99V	ENST00000261769	NM_004360.3	99	Ttg/Gtg																																																																														
APC	324	MSKCC	GRCh37	5	112173588	112173930	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAGCACTTATCAGAAACTTTTGACAATATAGACAATTTAAGTCCCAAGGCATCTCATCGTAGTAAGCAGAGACACAAGCAAAGTCTCTATGGTGATTATGTTTTTGACACCAATCGACATGATGATAATAGGTCAGACAATTTTAATACTGGCAACATGACTGTCCTTTCACCATATTTGAATACTACAGTGTTACCCAGCTCCTCTTCATCAAGAGGAAGCTTAGATAGTTCTCGTTCTGAAAAAGATAGAAGTTTGGAGAGAGAACGCGGAATTGGTCTAGGCAACTACCATCCAGCAACAGAAAATCCAGGAACTTCTTCAAAGCGAGGTTTGCAGAT	CTCAGCACTTATCAGAAACTTTTGACAATATAGACAATTTAAGTCCCAAGGCATCTCATCGTAGTAAGCAGAGACACAAGCAAAGTCTCTATGGTGATTATGTTTTTGACACCAATCGACATGATGATAATAGGTCAGACAATTTTAATACTGGCAACATGACTGTCCTTTCACCATATTTGAATACTACAGTGTTACCCAGCTCCTCTTCATCAAGAGGAAGCTTAGATAGTTCTCGTTCTGAAAAAGATAGAAGTTTGGAGAGAGAACGCGGAATTGGTCTAGGCAACTACCATCCAGCAACAGAAAATCCAGGAACTTCTTCAAAGCGAGGTTTGCAGAT	-			P-0040353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	17	21	0	ENST00000257430.4:c.2300_2642del	p.Gln767ProfsTer35	p.Q767Pfs*35	ENST00000257430	NM_000038.5	766	gCTCAGCACTTATCAGAAACTTTTGACAATATAGACAATTTAAGTCCCAAGGCATCTCATCGTAGTAAGCAGAGACACAAGCAAAGTCTCTATGGTGATTATGTTTTTGACACCAATCGACATGATGATAATAGGTCAGACAATTTTAATACTGGCAACATGACTGTCCTTTCACCATATTTGAATACTACAGTGTTACCCAGCTCCTCTTCATCAAGAGGAAGCTTAGATAGTTCTCGTTCTGAAAAAGATAGAAGTTTGGAGAGAGAACGCGGAATTGGTCTAGGCAACTACCATCCAGCAACAGAAAATCCAGGAACTTCTTCAAAGCGAGGTTTGCAGATc/gc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44921968	44921971	+	frameshift_variant	Frame_Shift_Del	DEL	AGTT	AGTT	-			P-0040353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	24	56	0	ENST00000377967.4:c.1502_1505del	p.Gln501LeufsTer3	p.Q501Lfs*3	ENST00000377967	NM_021140.2	501	cAGTTt/ct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0039859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	472	486	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	720	937	1	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57470669	57470669	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			817	67	313	0	ENST00000371085.3:c.142G>T	p.Ala48Ser	p.A48S	ENST00000371085	NM_000516.4	48	Gct/Tct																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708981	117708981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	118	607	0	ENST00000368508.3:c.1976C>G	p.Pro659Arg	p.P659R	ENST00000368508	NM_002944.2	659	cCc/cGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258178	16258178	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039859-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			774	185	665	0	ENST00000375759.3:c.5443G>C	p.Asp1815His	p.D1815H	ENST00000375759	NM_015001.2	1815	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040443-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			148	543	683	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841000	15841000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040443-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			102	150	299	0	ENST00000307771.7:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000307771	NM_005089.3	362	Gaa/Aaa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225339003	225339003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040443-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	168	337	0	ENST00000264414.4:c.2266C>T	p.Arg756Ter	p.R756*	ENST00000264414	NM_003590.4	756	Cga/Tga																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096337	2096337	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040443-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	65	712	0	ENST00000219066.1:c.170G>C	p.Arg57Pro	p.R57P	ENST00000219066	NM_002528.5	57	cGt/cCt																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99809065	99809065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040443-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			147	90	191	0	ENST00000280892.6:c.320C>G	p.Pro107Arg	p.P107R	ENST00000280892	NM_001130678.1	107	cCt/cGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878394	151878394	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040443-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	290	602	0	ENST00000262189.6:c.6551C>G	p.Ser2184Cys	p.S2184C	ENST00000262189	NM_170606.2	2184	tCt/tGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878742	151878742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040443-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	155	370	0	ENST00000262189.6:c.6203C>A	p.Ser2068Tyr	p.S2068Y	ENST00000262189	NM_170606.2	2068	tCt/tAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878808	151878808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040443-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	218	418	0	ENST00000262189.6:c.6137C>T	p.Pro2046Leu	p.P2046L	ENST00000262189	NM_170606.2	2046	cCa/cTa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542692	141542692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040443-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			817	48	567	0	ENST00000220592.5:c.2294A>G	p.Tyr765Cys	p.Y765C	ENST00000220592	NM_012154.3	765	tAt/tGt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	213	809	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	42003545	42003545	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	34	418	0	ENST00000219905.7:c.3082C>G	p.Gln1028Glu	p.Q1028E	ENST00000219905	NM_001164273.1	1028	Caa/Gaa																																																																														
SRC	6714	MSKCC	GRCh37	20	36024580	36024580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	99	822	0	ENST00000358208.4:c.569C>T	p.Ser190Leu	p.S190L	ENST00000358208		190	tCa/tTa																																																																														
STK11	6794	MSKCC	GRCh37	19	1221975	1221975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	157	745	0	ENST00000326873.7:c.890G>T	p.Arg297Met	p.R297M	ENST00000326873	NM_000455.4	297	aGg/aTg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161492	2161492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	42	652	0	ENST00000434045.2:c.35C>T	p.Ala12Val	p.A12V	ENST00000434045	NM_001127598.1	12	gCc/gTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953133	81953133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	76	338	0	ENST00000359376.3:c.2099G>T	p.Arg700Leu	p.R700L	ENST00000359376	NM_002661.3	700	cGg/cTg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325810	30325810	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	80	338	0	ENST00000322652.5:c.2008A>G	p.Ser670Gly	p.S670G	ENST00000322652	NM_015355.2	670	Agc/Ggc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40861956	40861956	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	27	394	0	ENST00000428826.2:c.1402-1G>A		p.X468_splice	ENST00000428826		468																																																																															
APC	324	MSKCC	GRCh37	5	112175211	112175211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	57	239	0	ENST00000257430.4:c.3920T>G	p.Ile1307Arg	p.I1307R	ENST00000257430	NM_000038.5	1307	aTa/aGa																																																																														
APC	324	MSKCC	GRCh37	5	112175226	112175226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	64	248	0	ENST00000257430.4:c.3935G>T	p.Gly1312Val	p.G1312V	ENST00000257430	NM_000038.5	1312	gGa/gTa																																																																														
STK19	8859	MSKCC	GRCh37	6	31939840	31939840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	136	805	2	ENST00000375331.2:c.67C>T	p.Arg23Trp	p.R23W	ENST00000375331	NM_004197.1	23	Cgg/Tgg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100003	157100003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	20	52	1	ENST00000346085.5:c.940G>A	p.Gly314Ser	p.G314S	ENST00000346085	NM_020732.3	314	Ggc/Agc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	53	388	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383707	42383707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	54	556	0	ENST00000221972.3:c.482C>T	p.Thr161Met	p.T161M	ENST00000221972	NM_021601.3	161	aCg/aTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822609	72822609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	51	567	0	ENST00000268489.5:c.9566C>T	p.Ala3189Val	p.A3189V	ENST00000268489	NM_006885.3	3189	gCg/gTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032377	10032377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	24	426	0	ENST00000330684.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000330684	NM_001134407.1	149	gCg/gTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439922	56439923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGGCACCGGATGC			P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	71	587	0	ENST00000407977.2:c.656_669dup	p.Pro224AlafsTer200	p.P224Afs*200	ENST00000407977		223	-/GCATCCGGTGCCGC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591924	48591924	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	37	410	0	ENST00000342988.3:c.1087T>G	p.Cys363Gly	p.C363G	ENST00000342988	NM_005359.5	363	Tgt/Ggt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164671	36164671	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	76	677	0	ENST00000300305.3:c.1204T>G	p.Ser402Ala	p.S402A	ENST00000300305		402	Tcc/Gcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087555	27087555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	79	688	1	ENST00000324856.7:c.2129G>T	p.Arg710Leu	p.R710L	ENST00000324856	NM_006015.4	710	cGc/cTc																																																																														
FH	2271	MSKCC	GRCh37	1	241665804	241665804	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	110	477	0	ENST00000366560.3:c.1175T>C	p.Val392Ala	p.V392A	ENST00000366560	NM_000143.3	392	gTt/gCt																																																																														
PGR	5241	MSKCC	GRCh37	11	100912720	100912720	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	51	434	0	ENST00000325455.5:c.2602C>G	p.Gln868Glu	p.Q868E	ENST00000325455	NM_001202474.3	868	Cag/Gag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435461	18435461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	158	281	0	ENST00000266497.5:c.446C>A	p.Thr149Lys	p.T149K	ENST00000266497		149	aCa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	486	441	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112892484	112892484	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	48	373	0	ENST00000351677.2:c.642G>C	p.Gln214His	p.Q214H	ENST00000351677	NM_002834.3	214	caG/caC																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528066	103528066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	195	379	1	ENST00000355739.4:c.3374G>T	p.Ser1125Ile	p.S1125I	ENST00000355739	NM_000123.3	1125	aGt/aTt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436252	110436252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	38	378	0	ENST00000375856.3:c.2149G>T	p.Gly717Cys	p.G717C	ENST00000375856	NM_003749.2	717	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	317	749	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523051	25523051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	93	740	0	ENST00000264709.3:c.134C>T	p.Ala45Val	p.A45V	ENST00000264709	NM_175629.2	45	gCa/gTa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010532	48010532	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	119	593	0	ENST00000234420.5:c.162del	p.Pro55LeufsTer26	p.P55Lfs*26	ENST00000234420	NM_000179.2	54	Ggg/gg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662127	227662127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	217	702	0	ENST00000305123.5:c.1328G>T	p.Arg443Leu	p.R443L	ENST00000305123	NM_005544.2	443	cGc/cTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448529	89448529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	226	503	0	ENST00000336596.2:c.1493G>T	p.Ser498Ile	p.S498I	ENST00000336596	NM_005233.5	498	aGc/aTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	250	458	0	ENST00000281708.4:c.2066G>T	p.Arg689Leu	p.R689L	ENST00000281708	NM_033632.3	689	cGg/cTg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876137	35876138	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	222	512	1	ENST00000303115.3:c.929_930delinsTT	p.Arg310Ile	p.R310I	ENST00000303115	NM_002185.3	310	aGG/aTT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180951	32180951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	326	686	1	ENST00000375023.3:c.2399C>A	p.Pro800Gln	p.P800Q	ENST00000375023	NM_004557.3	800	cCg/cAg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730031	41730032	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	203	613	0	ENST00000242208.4:c.497_498delinsAT	p.Arg166Asn	p.R166N	ENST00000242208	NM_002192.2	166	aGG/aAT																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287391	38287391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	187	615	2	ENST00000425967.3:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000425967	NM_001174067.1	89	cGg/cAg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372550	55372550	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	228	797	0	ENST00000297316.4:c.1240G>C	p.Val414Leu	p.V414L	ENST00000297316	NM_022454.3	414	Gtg/Ctg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376683	8376683	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	57	558	1	ENST00000356435.5:c.4430A>T	p.His1477Leu	p.H1477L	ENST00000356435		1477	cAc/cTc																																																																														
AR	367	MSKCC	GRCh37	X	66942741	66942741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	89	269	0	ENST00000374690.3:c.2522G>T	p.Arg841Leu	p.R841L	ENST00000374690	NM_000044.3	841	cGt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0040519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	483	182	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133574	55133574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	174	165	0	ENST00000257290.5:c.878G>A	p.Arg293His	p.R293H	ENST00000257290	NM_006206.4	293	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	237	663	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	315	686	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589619	67589621	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0040520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	102	228	0	ENST00000274335.5:c.1382_1384delGAG	p.Arg461_Glu462delinsGln	p.R461_E462delinsQ	ENST00000274335		461	cGAGaa/caa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435395	56435396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGGC			P-0008232-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			853	243	728	0	ENST00000407977.2:c.1737_1741dup	p.Pro581ArgfsTer121	p.P581Rfs*121	ENST00000407977		581	cct/cGCCTCct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0003322-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			355	102	521	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003322-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			227	71	336	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003322-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			227	71	336	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003322-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			227	71	336	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242483	55242506	+	inframe_deletion	In_Frame_Del	DEL	ATCTCCGAAAGCCAACAAGGAAAT	ATCTCCGAAAGCCAACAAGGAAAT	-			P-0003322-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			342	959	332	0	ENST00000275493.2:c.2253_2276del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	751	acATCTCCGAAAGCCAACAAGGAAATc/acc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104386990	104386990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003322-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			313	35	235	1	ENST00000369902.3:c.1355C>A	p.Ser452Tyr	p.S452Y	ENST00000369902	NM_016169.3	452	tCt/tAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343201	118343201	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003322-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			246	25	271	0	ENST00000534358.1:c.1327T>G	p.Leu443Val	p.L443V	ENST00000534358	NM_005933.3	443	Tta/Gta																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566283	141566283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003322-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			329	31	289	0	ENST00000220592.5:c.1129G>A	p.Glu377Lys	p.E377K	ENST00000220592	NM_012154.3	377	Gaa/Aaa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037292-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	221	505	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037292-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	229	358	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0037292-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	163	461	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037292-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	107	405	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037292-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	91	338	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037292-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	362	608	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217654	7217654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037292-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	116	380	0	ENST00000380728.2:c.273G>T	p.Lys91Asn	p.K91N	ENST00000380728		91	aaG/aaT																																																																														
AXL	558	MSKCC	GRCh37	19	41748896	41748896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037292-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			803	83	571	0	ENST00000301178.4:c.1421G>A	p.Arg474Gln	p.R474Q	ENST00000301178	NM_021913.4	474	cGg/cAg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50815230	50815230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037292-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	182	566	0	ENST00000398568.2:c.1583C>A	p.Ala528Glu	p.A528E	ENST00000398568	NM_001042412.1	528	gCg/gAg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209101817	209101817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037292-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	124	364	0	ENST00000345146.2:c.1231C>G	p.Gln411Glu	p.Q411E	ENST00000345146	NM_005896.2	411	Cag/Gag																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182679076	182679076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037292-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	53	295	1	ENST00000292782.4:c.458G>T	p.Arg153Leu	p.R153L	ENST00000292782	NM_020640.2	153	cGa/cTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680197	30680197	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037292-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			703	214	644	0	ENST00000376406.3:c.1522A>T	p.Ile508Phe	p.I508F	ENST00000376406	NM_014641.2	508	Atc/Ttc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190557	32190557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037292-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			797	223	672	0	ENST00000375023.3:c.182C>T	p.Thr61Met	p.T61M	ENST00000375023	NM_004557.3	61	aCg/aTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680608	30680608	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2075015		P-0038831-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	75	531	0	ENST00000376406.3:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000376406	NM_014641.2	371	Gag/Aag																																																																														
AKT1	207	MSKCC	GRCh37	14	105239419	105239419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038831-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	30	700	0	ENST00000349310.3:c.968A>G	p.Asp323Gly	p.D323G	ENST00000349310	NM_001014432.1	323	gAc/gGc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	102	316	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0040305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	87	419	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	49	271	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	19	411	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	120	301	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129817	30129817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	36	457	0	ENST00000263025.4:c.396G>T	p.Leu132Phe	p.L132F	ENST00000263025	NM_002746.2	132	ttG/ttT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0040307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	146	633	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0040307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	35	555	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720671	89720671	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	15	143	0	ENST00000371953.3:c.822G>A	p.Trp274Ter	p.W274*	ENST00000371953	NM_000314.4	274	tgG/tgA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720681	89720681	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	15	138	0	ENST00000371953.3:c.833del	p.Phe278SerfsTer13	p.F278Sfs*13	ENST00000371953	NM_000314.4	278	Ttc/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	338	788	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922694	44922694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	57	340	0	ENST00000377967.4:c.1555C>T	p.Arg519Ter	p.R519*	ENST00000377967	NM_021140.2	519	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487610	56487610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	106	633	0	ENST00000267101.3:c.1543G>T	p.Gly515Cys	p.G515C	ENST00000267101	NM_001982.3	515	Ggt/Tgt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046563	30046563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	530	561	1	ENST00000331968.5:c.2620G>T	p.Gly874Cys	p.G874C	ENST00000331968	NM_002742.2	874	Ggc/Tgc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005534	150005534	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	58	315	0	ENST00000253339.5:c.691G>T	p.Gly231Ter	p.G231*	ENST00000253339		231	Gga/Tga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193205431	193205431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	74	394	0	ENST00000367435.3:c.1362C>G	p.Phe454Leu	p.F454L	ENST00000367435	NM_024529.4	454	ttC/ttG																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980428	201980429	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0040329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	260	594	0	ENST00000359651.3:c.163+2dup		p.X55_splice	ENST00000359651		55																																																																															
HRAS	3265	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	167	636	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575553	64575553	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	193	522	0	ENST00000337652.1:c.479C>G	p.Ser160Cys	p.S160C	ENST00000337652	NM_130803.2	160	tCc/tGc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572535	95572535	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	34	229	0	ENST00000343455.3:c.2830C>T	p.Arg944Ter	p.R944*	ENST00000343455	NM_177438.2	944	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	153	453	0				ENST00000310581	NM_198253.2																																																																																
JAK2	3717	MSKCC	GRCh37	9	5081802	5081802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	37	228	0	ENST00000381652.3:c.2512G>C	p.Asp838His	p.D838H	ENST00000381652	NM_004972.3	838	Gac/Cac																																																																														
RHOA	387	MSKCC	GRCh37	3	49412905	49412905	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	344	699	0	ENST00000418115.1:c.118G>C	p.Glu40Gln	p.E40Q	ENST00000418115	NM_001664.2	40	Gag/Cag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692830	89692830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	78	156	1	ENST00000371953.3:c.314G>A	p.Cys105Tyr	p.C105Y	ENST00000371953	NM_000314.4	105	tGt/tAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48923118	48923127	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTGCTAAA	TGGTGCTAAA	-			P-0040334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	38	202	0	ENST00000267163.4:c.566_575del	p.Leu189Ter	p.L189*	ENST00000267163	NM_000321.2	189	tTGGTGCTAAAa/ta																																																																														
AKT1	207	MSKCC	GRCh37	14	105242114	105242142	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGATGGCGGTTGTCCACTCCTCCCTGCAG	GGATGGCGGTTGTCCACTCCTCCCTGCAG	-			P-0040334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	193	704	0	ENST00000349310.3:c.288-6_310del		p.X96_splice	ENST00000349310	NM_001014432.1	96																																																																															
TP53	7157	MSKCC	GRCh37	17	7577508	7577514	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGTG	TCCAGTG	-			P-0040334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	202	706	0	ENST00000269305.4:c.767_773del	p.Thr256LysfsTer87	p.T256Kfs*87	ENST00000269305	NM_001126112.2	256	aCACTGGAa/aa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307502	118307502	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	81	475	0	ENST00000534358.1:c.275C>G	p.Ser92Trp	p.S92W	ENST00000534358	NM_005933.3	92	tCg/tGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	180	526	0	ENST00000269305.4:c.526del	p.Cys176AlafsTer71	p.C176Afs*71	ENST00000269305	NM_001126112.2	176	Tgc/gc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846266	156846266	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	43	541	0	ENST00000524377.1:c.1707C>G	p.His569Gln	p.H569Q	ENST00000524377	NM_002529.3	569	caC/caG																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38064133	38064133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	23	354	0	ENST00000250448.2:c.45G>T	p.Trp15Cys	p.W15C	ENST00000250448	NM_004496.3	15	tgG/tgT																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650859	37650859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	91	564	0	ENST00000447079.4:c.2331C>G	p.Ile777Met	p.I777M	ENST00000447079	NM_015083.1	777	atC/atG																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326776	62326776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	95	751	0	ENST00000508582.2:c.3667G>A	p.Asp1223Asn	p.D1223N	ENST00000508582		1223	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638343	117638343	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	19	298	0	ENST00000368508.3:c.6098A>T	p.Asp2033Val	p.D2033V	ENST00000368508	NM_002944.2	2033	gAc/gTc																																																																														
AR	367	MSKCC	GRCh37	X	66765298	66765298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	15	607	0	ENST00000374690.3:c.310C>A	p.Pro104Thr	p.P104T	ENST00000374690	NM_000044.3	104	Ccc/Acc																																																																														
MED12	9968	MSKCC	GRCh37	X	70352179	70352256	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCTTGCCTGGCTCCCCTGTGACCCTGTGTCCTCTGTCTGTTCTCCAGCTCTCTAGAGCGCTCTGGTGTATGGCTGGT	GCCTTGCCTGGCTCCCCTGTGACCCTGTGTCCTCTGTCTGTTCTCCAGCTCTCTAGAGCGCTCTGGTGTATGGCTGGT	-			P-0040343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	39	331	0	ENST00000374080.3:c.4254-47_4284del		p.X1418_splice	ENST00000374080		1418																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	57	281	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0040345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	54	301	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112176018	112176018	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	38	194	0	ENST00000257430.4:c.4728del	p.Glu1577AsnfsTer73	p.E1577Nfs*73	ENST00000257430	NM_000038.5	1576	gAa/ga																																																																														
EP300	2033	MSKCC	GRCh37	22	41523494	41523494	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	65	241	1	ENST00000263253.7:c.910C>T	p.Gln304Ter	p.Q304*	ENST00000263253	NM_001429.3	304	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112173679	112173679	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0040345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	42	247	0	ENST00000257430.4:c.2388T>G	p.Tyr796Ter	p.Y796*	ENST00000257430	NM_000038.5	796	taT/taG																																																																														
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	60	387	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591122	67591130	+	inframe_deletion	In_Frame_Del	DEL	AGCTGAGAA	AGCTGAGAA	-			P-0040458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	24	292	0	ENST00000274335.5:c.1717_1725delCTGAGAAAG	p.Leu573_Lys575del	p.L573_K575del	ENST00000274335		572	cAGCTGAGAAag/cag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950930	32950930	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0040458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	35	375	0	ENST00000380152.3:c.8754+2T>G		p.X2918_splice	ENST00000380152		2918																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	14	333	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	17	246	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	307	349	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936393		P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	97	312	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885593	111885593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	197	727	1	ENST00000341259.2:c.1370G>A	p.Arg457Gln	p.R457Q	ENST00000341259	NM_005475.2	457	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579469	7579470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGCGG			P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	151	667	0	ENST00000269305.4:c.217_218insCCGCG	p.Val73AlafsTer52	p.V73Afs*52	ENST00000269305	NM_001126112.2	73	gtg/gCCGCGtg																																																																														
NF1	4763	MSKCC	GRCh37	17	29663810	29663810	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	46	485	0	ENST00000358273.4:c.6305A>T	p.Tyr2102Phe	p.Y2102F	ENST00000358273	NM_001042492.2	2102	tAc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	185	397	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	328	722	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798764	135798764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	86	237	0	ENST00000298552.3:c.479G>A	p.Arg160His	p.R160H	ENST00000298552	NM_001162426.1	160	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	240	324	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098815	178098815	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	570	607	4	ENST00000397062.3:c.230A>G	p.Asp77Gly	p.D77G	ENST00000397062	NM_006164.4	77	gAt/gGt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55153709	55153709	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	257	432	0	ENST00000257290.5:c.2674+1G>T		p.X892_splice	ENST00000257290	NM_006206.4	892																																																																															
SPRED1	161742	MSKCC	GRCh37	15	38631947	38631947	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	146	405	1	ENST00000299084.4:c.433G>T	p.Glu145Ter	p.E145*	ENST00000299084	NM_152594.2	145	Gag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29526904	29527465	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCACTTTGGGAGGCTGAGGCAGAAGGATCACTTGAGCCCAGGGGTTCAAGACCAGCTTGGCCAACATGGTGAAATCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAAACCCAGCTACTCTGGAGGCTGAGGCGGGAGAATCGCTTGACCCTGGGAGGCAGAGGTTGCAATGAGCCAAGATCGTGCCTTTGTACTCCAGCCTGGGCAACAGAGGAAGACACCATCTTGGGAAAAAAAAAAAAAAGAAGTTCAGAAAACAGCTTGTTTGGGAAGGACTGTTTTTTGTATTCCTTTAATAATTCAATAAAGAAAATAGAAAAAGGATTTTTTTTAAATTTGAGAAACATTTAAATGATGACCACTACTTAAATTATGAAATTGAAAACCACAAATATAAATTATGCATTCTTTATAGTATGAGTTTTAGAGGCTGTTAATTTGCTATAATATTAGCTACATCTGGAATAGAAGAAACTTCATATATTATCTTATCGCTATATTTGAATTCTGTAGAAGTTATTTCTGGACAGTCTACGAAA	AGCACTTTGGGAGGCTGAGGCAGAAGGATCACTTGAGCCCAGGGGTTCAAGACCAGCTTGGCCAACATGGTGAAATCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAAACCCAGCTACTCTGGAGGCTGAGGCGGGAGAATCGCTTGACCCTGGGAGGCAGAGGTTGCAATGAGCCAAGATCGTGCCTTTGTACTCCAGCCTGGGCAACAGAGGAAGACACCATCTTGGGAAAAAAAAAAAAAAGAAGTTCAGAAAACAGCTTGTTTGGGAAGGACTGTTTTTTGTATTCCTTTAATAATTCAATAAAGAAAATAGAAAAAGGATTTTTTTTAAATTTGAGAAACATTTAAATGATGACCACTACTTAAATTATGAAATTGAAAACCACAAATATAAATTATGCATTCTTTATAGTATGAGTTTTAGAGGCTGTTAATTTGCTATAATATTAGCTACATCTGGAATAGAAGAAACTTCATATATTATCTTATCGCTATATTTGAATTCTGTAGAAGTTATTTCTGGACAGTCTACGAAA	-			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1	209	0	0	ENST00000358273.4:c.889-533_917del		p.X297_splice	ENST00000358273	NM_001042492.2	297																																																																															
STK11	6794	MSKCC	GRCh37	19	1220656	1220656	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	527	828	2	ENST00000326873.7:c.675del	p.Asn226ThrfsTer61	p.N226Tfs*61	ENST00000326873	NM_000455.4	225	gCc/gc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217224	66217226	+	missense_variant	Missense_Mutation	ONP	CAC	CAC	ACA			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	97	359	0	ENST00000273854.3:c.2389_2391delinsTGT	p.Val797Cys	p.V797C	ENST00000273854	NM_004439.5	797	GTG/TGT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671313	30671313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	125	419	0	ENST00000376406.3:c.5564A>G	p.Asp1855Gly	p.D1855G	ENST00000376406	NM_014641.2	1855	gAt/gGt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170145	32170145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	281	830	2	ENST00000375023.3:c.3463C>A	p.Pro1155Thr	p.P1155T	ENST00000375023	NM_004557.3	1155	Cca/Aca																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738425	145738425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	470	708	1	ENST00000428558.2:c.2560A>G	p.Thr854Ala	p.T854A	ENST00000428558	NM_004260.3	854	Acc/Gcc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	136	345	1	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022917	27022939	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCAGCAGCCTGGGCAAC	CCGCCGCCAGCAGCCTGGGCAAC	-			P-0039008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			20	13	21	0	ENST00000324856.7:c.31_53del	p.Ser11AlafsTer92	p.S11Afs*92	ENST00000324856	NM_006015.4	8	gCCGCCGCCAGCAGCCTGGGCAAC/g																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226767	2226767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	181	326	1	ENST00000398665.3:c.4247G>A	p.Arg1416His	p.R1416H	ENST00000398665	NM_032482.2	1416	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448439	49448439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	205	594	0	ENST00000301067.7:c.272G>A	p.Trp91Ter	p.W91*	ENST00000301067	NM_003482.3	91	tGg/tAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56434903	56434921	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGGCCCCTCCCCAGGTG	GAAGGCCCCTCCCCAGGTG	-			P-0039008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	127	596	0	ENST00000407977.2:c.2216_2234del	p.Pro739LeufsTer82	p.P739Lfs*82	ENST00000407977		739	cCACCTGGGGAGGGGCCTTCt/ct																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971164	13971164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	123	329	0	ENST00000405192.2:c.765G>A	p.Met255Ile	p.M255I	ENST00000405192	NM_001163147.1	255	atG/atA																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787684	135787684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	145	477	0	ENST00000298552.3:c.898A>G	p.Thr300Ala	p.T300A	ENST00000298552	NM_001162426.1	300	Aca/Gca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	227	1030	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041886	14041886	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	132	518	0	ENST00000311895.7:c.2433G>C	p.Glu811Asp	p.E811D	ENST00000311895	NM_005236.2	811	gaG/gaC																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151640	55151640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	164	822	0	ENST00000257290.5:c.2426T>C	p.Leu809Ser	p.L809S	ENST00000257290	NM_006206.4	809	tTg/tCg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270134	66270418	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTCCCACTGTCACAGACACAGCAATTACAGGAATCTGGCTTTGATCGCTGGATGCTGCAACTGCTGATAGGAGATACAGAAAATGGAGCTTGTGGTTAAAGTGATCACATGCATTCAAAATAAAAGTTGCTTAATAGACAGTAATCAATTCATGATTTAAGCAATTTACCCACACTTAGCTGAAATTTCCCCTAATATCCTTTCTTAAAAGTGTGTAATTGAAAAGTCATCTATAATAGAAAATATTTACTTTCCAAATAGAGATTTGAGAGCATCACTAAGTC	ACTCCCACTGTCACAGACACAGCAATTACAGGAATCTGGCTTTGATCGCTGGATGCTGCAACTGCTGATAGGAGATACAGAAAATGGAGCTTGTGGTTAAAGTGATCACATGCATTCAAAATAAAAGTTGCTTAATAGACAGTAATCAATTCATGATTTAAGCAATTTACCCACACTTAGCTGAAATTTCCCCTAATATCCTTTCTTAAAAGTGTGTAATTGAAAAGTCATCTATAATAGAAAATATTTACTTTCCAAATAGAGATTTGAGAGCATCACTAAGTC	-			P-0039797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	56	520	0	ENST00000273854.3:c.1688-224_1748del		p.X563_splice	ENST00000273854	NM_004439.5	563																																																																															
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	341	703	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	301	662	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478815	56478815	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	384	657	0	ENST00000267101.3:c.271A>G	p.Met91Val	p.M91V	ENST00000267101	NM_001982.3	91	Atg/Gtg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41239830	41239830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	134	522	0	ENST00000379561.5:c.520G>C	p.Glu174Gln	p.E174Q	ENST00000379561	NM_002015.3	174	Gag/Cag																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045714	26045714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	76	304	0	ENST00000540144.1:c.76G>T	p.Ala26Ser	p.A26S	ENST00000540144	NM_003531.2	26	Gcc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101179	41101179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	138	752	0	ENST00000373198.4:c.1177G>A	p.Val393Met	p.V393M	ENST00000373198	NM_133170.3	393	Gtg/Atg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39233628	39233628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	36	622	0	ENST00000402219.2:c.2716G>A	p.Glu906Lys	p.E906K	ENST00000402219	NM_005633.3	906	Gaa/Aaa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39233637	39233637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	37	586	0	ENST00000402219.2:c.2707G>C	p.Glu903Gln	p.E903Q	ENST00000402219	NM_005633.3	903	Gaa/Caa																																																																														
MET	4233	MSKCC	GRCh37	7	116411881	116411882	+	intron_variant	Intron	INS	-	-	TAGA			P-0040127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	498	912	0	ENST00000397752.3:c.2888-21_2888-20insAGAT		p.*963*	ENST00000397752	NM_000245.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	234	417	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	334	614	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	105	499	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0040131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	178	445	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
REL	5966	MSKCC	GRCh37	2	61149071	61149071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	76	449	0	ENST00000295025.8:c.1261C>T	p.Arg421Cys	p.R421C	ENST00000295025	NM_002908.2	421	Cgc/Tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133248877	133248878	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTGCAGCAGGAAGTCAAAG			P-0040131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	116	657	0	ENST00000320574.5:c.1698_1717dup	p.Arg573ProfsTer45	p.R573Pfs*45	ENST00000320574	NM_006231.2	573	cgg/cCTTTGACTTCCTGCTGCAGCgg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78935210	78935210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	69	637	0	ENST00000306801.3:c.3622C>T	p.Arg1208Trp	p.R1208W	ENST00000306801	NM_020761.2	1208	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	234	332	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112175755	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	81	301	0	ENST00000257430.4:c.4464del	p.Leu1488PhefsTer19	p.L1488Ffs*19	ENST00000257430	NM_000038.5	1488	ttA/tt																																																																														
ATM	472	MSKCC	GRCh37	11	108121649	108121649	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	247	440	2	ENST00000278616.4:c.1457A>C	p.Lys486Thr	p.K486T	ENST00000278616	NM_000051.3	486	aAa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578158	7578389	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCG	CCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCG	-			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	329	598	0	ENST00000269305.4:c.541_672+19del		p.X181_splice	ENST00000269305	NM_001126112.2	181																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247265	153247265	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	308	321	0	ENST00000281708.4:c.1537A>T	p.Arg513Trp	p.R513W	ENST00000281708	NM_033632.3	513	Agg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112174013	112174014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTACCACTGAATTACATTGTGTGACAGATGAGAGAAATGCACTTAGAAGAAGCTCTGCTGCC			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	61	336	0	ENST00000257430.4:c.2724_2785dup	p.His929LeufsTer8	p.H929Lfs*8	ENST00000257430	NM_000038.5	908	tct/tCTACCACTGAATTACATTGTGTGACAGATGAGAGAAATGCACTTAGAAGAAGCTCTGCTGCCct																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964435	93964435	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	98	475	1	ENST00000369303.4:c.2462G>T	p.Ser821Ile	p.S821I	ENST00000369303	NM_004440.3	821	aGc/aTc																																																																														
TEK	7010	MSKCC	GRCh37	9	27192621	27192621	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	233	377	0	ENST00000380036.4:c.1624G>A	p.Gly542Arg	p.G542R	ENST00000380036	NM_000459.3	542	Gga/Aga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843572	156843572	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	179	802	1	ENST00000524377.1:c.998T>A	p.Leu333Gln	p.L333Q	ENST00000524377	NM_002529.3	333	cTg/cAg																																																																														
MET	4233	MSKCC	GRCh37	7	116412008	116412023	+	protein_altering_variant	In_Frame_Del	DEL	ATGAATCTGTAGACTA	ATGAATCTGTAGACTA	G			P-0040161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	93	659	0	ENST00000397752.3:c.2993_3008delinsG	p.Asn998_Tyr1003delinsSer	p.N998_Y1003delinsS	ENST00000397752	NM_000245.2	998	aATGAATCTGTAGACTAc/aGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	310	897	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745539	162745539	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	61	535	0	ENST00000367921.3:c.1954A>G	p.Met652Val	p.M652V	ENST00000367921	NM_006182.2	652	Atg/Gtg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510217	120510217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	105	476	0	ENST00000256646.2:c.1292G>A	p.Gly431Glu	p.G431E	ENST00000256646	NM_024408.3	431	gGa/gAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937116	76937116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	99	260	0	ENST00000373344.5:c.3632A>G	p.Asp1211Gly	p.D1211G	ENST00000373344	NM_000489.3	1211	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	539	925	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2493216	2493216	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	151	603	2	ENST00000355716.4:c.656T>G	p.Val219Gly	p.V219G	ENST00000355716	NM_003820.2	219	gTt/gGt																																																																														
MED12	9968	MSKCC	GRCh37	X	70351984	70351984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	416	782	0	ENST00000374080.3:c.4181C>T	p.Ala1394Val	p.A1394V	ENST00000374080		1394	gCa/gTa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0040293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	89	620	1	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	438	711	0	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176175728	176175733	+	inframe_deletion	In_Frame_Del	DEL	GTCCTC	GTCCTC	-			P-0040300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	263	783	1	ENST00000367669.3:c.382_387del	p.Glu128_Asp129del	p.E128_D129del	ENST00000367669	NM_022457.5	128	GAGGAC/-																																																																														
CDH1	999	MSKCC	GRCh37	16	68849437	68849437	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	69	566	0	ENST00000261769.5:c.1340A>C	p.Lys447Thr	p.K447T	ENST00000261769	NM_004360.3	447	aAg/aCg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728637	190728637	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	56	440	0	ENST00000441310.2:c.2025A>C	p.Gln675His	p.Q675H	ENST00000441310	NM_000534.4	675	caA/caC																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56171058	56171058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	128	275	0	ENST00000399503.3:c.1886G>T	p.Gly629Val	p.G629V	ENST00000399503	NM_005921.1	629	gGa/gTa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066486	94066486	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	36	323	0	ENST00000369303.4:c.1273A>G	p.Ser425Gly	p.S425G	ENST00000369303	NM_004440.3	425	Agc/Ggc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486284	8486284	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	48	321	0	ENST00000356435.5:c.2533C>G	p.Pro845Ala	p.P845A	ENST00000356435		845	Cct/Gct																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128347978	128347978	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	98	754	0	ENST00000265960.3:c.527A>C	p.Lys176Thr	p.K176T	ENST00000265960	NM_001006617.1	176	aAg/aCg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645155	67645156	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	A			P-0040300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1321	231	644	0	ENST00000264010.4:c.420_421delinsA	p.Asn140LysfsTer14	p.N140Kfs*14	ENST00000264010	NM_006565.3	140	aaTGaa/aaAaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965068	25965068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	126	508	1	ENST00000435504.4:c.4138C>T	p.Gln1380Ter	p.Q1380*	ENST00000435504		1380	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175864	112175865	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0040301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	52	198	0	ENST00000257430.4:c.4573_4574del	p.Met1525AlafsTer7	p.M1525Afs*7	ENST00000257430	NM_000038.5	1525	ATg/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	51	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	62	705	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
FANCC	2176	MSKCC	GRCh37	9	97934360	97934360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	50	396	0	ENST00000289081.3:c.415G>A	p.Gly139Arg	p.G139R	ENST00000289081	NM_000136.2	139	Ggg/Agg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	18	185	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0040412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	28	735	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	46	701	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094488	27094488	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0040412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	28	467	0	ENST00000324856.7:c.3196C>T	p.Gln1066Ter	p.Q1066*	ENST00000324856	NM_006015.4	1066	Cag/Tag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632588	3632588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	37	687	0	ENST00000294008.3:c.5260G>A	p.Glu1754Lys	p.E1754K	ENST00000294008	NM_032444.2	1754	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	169	208	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	13	100	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	29	137	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	233	191	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138478043	138478043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	173	237	0	ENST00000289153.2:c.143G>A	p.Arg48Gln	p.R48Q	ENST00000289153	NM_006219.2	48	cGg/cAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423646	88423646	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	27	144	0	ENST00000360948.2:c.2189C>G	p.Thr730Ser	p.T730S	ENST00000360948	NM_001012338.2	730	aCc/aGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604706	48604706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	142	210	0	ENST00000342988.3:c.1528G>A	p.Gly510Arg	p.G510R	ENST00000342988	NM_005359.5	510	Gga/Aga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645922	67645922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	417	486	0	ENST00000264010.4:c.850C>T	p.His284Tyr	p.H284Y	ENST00000264010	NM_006565.3	284	Cac/Tac																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100436	8100436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	608	460	0	ENST00000346208.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000346208		137	tCg/tTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041713	47041713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1593	236	589	0	ENST00000329236.7:c.1704G>C	p.Lys568Asn	p.K568N	ENST00000329236	NM_001204466.1	568	aaG/aaC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653863	89653865	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TAA	TAA	-			P-0006558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1735	337	308	0	ENST00000371953.3:c.161_163del	p.Val54_Arg55delinsGly	p.V54_R55delinsG	ENST00000371953	NM_000314.4	54	gTAAgg/ggg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			17	302	438	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	46	542	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	188	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	276	405	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	176	391	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1311	297	567	3	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157488227	157488227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	267	438	0	ENST00000346085.5:c.2933C>A	p.Pro978His	p.P978H	ENST00000346085	NM_020732.3	978	cCc/cAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920392	114920392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	303	495	0	ENST00000543371.1:c.1333A>G	p.Lys445Glu	p.K445E	ENST00000543371	NM_001198531.1	445	Aag/Gag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912463	32912463	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1697	295	650	0	ENST00000380152.3:c.3971A>C	p.Tyr1324Ser	p.Y1324S	ENST00000380152		1324	tAt/tCt																																																																														
MGA	23269	MSKCC	GRCh37	15	42003095	42003095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	459	624	0	ENST00000219905.7:c.2632A>G	p.Ile878Val	p.I878V	ENST00000219905	NM_001164273.1	878	Att/Gtt																																																																														
APC	324	MSKCC	GRCh37	5	112175745	112175753	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATACTT	CTGATACTT	A			P-0006659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	157	365	0	ENST00000257430.4:c.4454_4462delinsA	p.Ala1485AspfsTer26	p.A1485Dfs*26	ENST00000257430	NM_000038.5	1485	gCTGATACTTta/gAta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	160	174	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0006878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	190	216	0	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602488	10602488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	179	203	0	ENST00000171111.5:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000171111	NM_203500.1	364	Ggc/Tgc																																																																														
ATR	545	MSKCC	GRCh37	3	142257340	142257340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	41	216	1	ENST00000350721.4:c.3709C>A	p.Leu1237Ile	p.L1237I	ENST00000350721	NM_001184.3	1237	Ctc/Atc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968187	15968187	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	104	253	0	ENST00000268712.3:c.5098C>G	p.Pro1700Ala	p.P1700A	ENST00000268712	NM_006311.3	1700	Cca/Gca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			204	448	589	1	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821598	72821618	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCCGCCGCCGCCA	CCGCCGCCGCCGCCGCCGCCA	-			P-0017023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	53	71	1	ENST00000268489.5:c.10557_10577del	p.Gly3521_Gly3527del	p.G3521_G3527del	ENST00000268489	NM_006885.3	3519	ggTGGCGGCGGCGGCGGCGGCGGc/ggc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	459	605	0	ENST00000322088.6:c.767C>A	p.Ser256Tyr	p.S256Y	ENST00000322088	NM_014225.5	256	tCc/tAc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495384	56495384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			886	70	577	0	ENST00000267101.3:c.3574G>C	p.Asp1192His	p.D1192H	ENST00000267101	NM_001982.3	1192	Gat/Cat																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605868	46605868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			761	208	591	0	ENST00000263734.3:c.1516G>A	p.Ala506Thr	p.A506T	ENST00000263734	NM_001430.4	506	Gcc/Acc																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518806	204518806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	47	247	0	ENST00000367182.3:c.1469C>A	p.Ala490Glu	p.A490E	ENST00000367182	NM_001278516.1	490	gCa/gAa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110590	4110590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	95	644	0	ENST00000262948.5:c.367C>A	p.His123Asn	p.H123N	ENST00000262948	NM_030662.3	123	Cac/Aac																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740380	145740380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	106	742	0	ENST00000428558.2:c.1560C>A	p.Ser520Arg	p.S520R	ENST00000428558	NM_004260.3	520	agC/agA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391901	139391901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017023-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	211	778	0	ENST00000277541.6:c.6290C>T	p.Pro2097Leu	p.P2097L	ENST00000277541	NM_017617.3	2097	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	357	377	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			561	244	295	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14628978	14628978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	95	299	0	ENST00000254322.2:c.184G>A	p.Glu62Lys	p.E62K	ENST00000254322	NM_006145.1	62	Gag/Aag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246861	10246861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			656	128	417	0	ENST00000340748.4:c.4544G>A	p.Gly1515Glu	p.G1515E	ENST00000340748		1515	gGa/gAa																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152858005	152858005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	46	87	0	ENST00000406277.2:c.610G>C	p.Glu204Gln	p.E204Q	ENST00000406277	NM_152274.4	204	Gag/Cag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330590	65330590	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	101	287	0	ENST00000342505.4:c.1056G>C	p.Lys352Asn	p.K352N	ENST00000342505	NM_002227.2	352	aaG/aaC																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953210	81953210	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	73	217	0	ENST00000359376.3:c.2176T>A	p.Tyr726Asn	p.Y726N	ENST00000359376	NM_002661.3	726	Tac/Aac																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246804	10246804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	121	378	0	ENST00000340748.4:c.4601G>A	p.Gly1534Asp	p.G1534D	ENST00000340748		1534	gGc/gAc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319060	62319060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1280	118	443	1	ENST00000508582.2:c.1490G>A	p.Arg497His	p.R497H	ENST00000508582		497	cGc/cAc																																																																														
SDHA	6389	MSKCC	GRCh37	5	251205	251205	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	54	192	0	ENST00000264932.6:c.1650G>C	p.Lys550Asn	p.K550N	ENST00000264932	NM_004168.2	550	aaG/aaC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945111	151945111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026942-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	26	184	0	ENST00000262189.6:c.2408C>A	p.Ala803Asp	p.A803D	ENST00000262189	NM_170606.2	803	gCt/gAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	316	465	1	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	22	590	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	222	630	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350248	15350248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	89	855	0	ENST00000263377.2:c.3531G>T	p.Lys1177Asn	p.K1177N	ENST00000263377	NM_058243.2	1177	aaG/aaT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094925	11094925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	31	844	1	ENST00000344626.4:c.98G>T	p.Gly33Val	p.G33V	ENST00000344626	NM_003072.3	33	gGt/gTt																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158474	26158475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	214	730	0	ENST00000289316.2:c.78dup	p.Gly27ArgfsTer117	p.G27Rfs*117	ENST00000289316	NM_138720.2	26	gac/gaCc																																																																														
NBN	4683	MSKCC	GRCh37	8	90983463	90983463	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	209	406	0	ENST00000265433.3:c.640G>T	p.Gly214Ter	p.G214*	ENST00000265433	NM_002485.4	214	Gga/Tga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87549130	87549130	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	169	588	0	ENST00000277120.3:c.1687G>T	p.Gly563Ter	p.G563*	ENST00000277120		563	Gga/Tga																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127920662	127920662	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	136	366	1	ENST00000373547.4:c.238-1G>A		p.X80_splice	ENST00000373547	NM_002721.4	80																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	151	509	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	135	399	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	135	399	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0032012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	208	610	1	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420342	49420342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	414	662	0	ENST00000301067.7:c.15407A>G	p.His5136Arg	p.H5136R	ENST00000301067	NM_003482.3	5136	cAt/cGt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478783	57478783	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	144	412	0	ENST00000371085.3:c.369G>C	p.Glu123Asp	p.E123D	ENST00000371085	NM_000516.4	123	gaG/gaC																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213896	66213896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	10	428	0	ENST00000273854.3:c.2534C>A	p.Thr845Asn	p.T845N	ENST00000273854	NM_004439.5	845	aCt/aAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	315	906	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991632	72991632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	135	568	4	ENST00000268489.5:c.2413C>T	p.Arg805Trp	p.R805W	ENST00000268489	NM_006885.3	805	Cgg/Tgg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162748510	162748510	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	88	313	0	ENST00000367921.3:c.2424A>C	p.Gln808His	p.Q808H	ENST00000367921	NM_006182.2	808	caA/caC																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118367012	118367013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0032050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	95	457	0	ENST00000534358.1:c.5596_5597dup	p.Pro1867HisfsTer5	p.P1867Hfs*5	ENST00000534358	NM_005933.3	1865	aac/aaCCc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47139503	47139503	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	124	589	0	ENST00000409792.3:c.5084T>G	p.Val1695Gly	p.V1695G	ENST00000409792	NM_014159.6	1695	gTc/gGc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1956968	1956968	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143360610		P-0032050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	136	699	3	ENST00000382891.5:c.2419G>A	p.Ala807Thr	p.A807T	ENST00000382891	NM_133335.3	807	Gcc/Acc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	61	452	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578247	7578247	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	59	475	1	ENST00000269305.4:c.602T>A	p.Leu201Ter	p.L201*	ENST00000269305	NM_001126112.2	201	tTg/tAg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136926	64136932	+	frameshift_variant	Frame_Shift_Del	DEL	GTACCTG	GTACCTG	-			P-0032053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	38	352	0	ENST00000334205.4:c.1439_1445del	p.Tyr480SerfsTer36	p.Y480Sfs*36	ENST00000334205	NM_003942.2	479	acGTACCTG/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579550	7579550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	59	563	0	ENST00000269305.4:c.137C>A	p.Ser46Tyr	p.S46Y	ENST00000269305	NM_001126112.2	46	tCc/tAc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11031196	11031196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	34	565	0	ENST00000327064.4:c.1281C>A	p.Phe427Leu	p.F427L	ENST00000327064	NM_199141.1	427	ttC/ttA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	33	480	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
AKT1	207	MSKCC	GRCh37	14	105239419	105239419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	110	467	0	ENST00000349310.3:c.968A>G	p.Asp323Gly	p.D323G	ENST00000349310	NM_001014432.1	323	gAc/gGc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871798	12871798	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	38	130	0	ENST00000228872.4:c.518delA	p.Asn173MetfsTer52	p.N173Mfs*52	ENST00000228872	NM_004064.3	172	gAa/ga																																																																														
KDR	3791	MSKCC	GRCh37	4	55962511	55962511	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0032068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	19	309	0	ENST00000263923.4:c.2615-2A>G		p.X872_splice	ENST00000263923	NM_002253.2	872																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44923063	44923063	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	17	188	0	ENST00000377967.4:c.1923+1G>A		p.X641_splice	ENST00000377967	NM_021140.2	641																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	174	592	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0032077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	133	402	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	130	407	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	175	702	2	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29665721	29665721	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0032133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	45	222	0	ENST00000358273.4:c.6820-1G>A		p.X2274_splice	ENST00000358273	NM_001042492.2	2274																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48581314	48581315	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0032133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	55	529	0	ENST00000342988.3:c.618_619del	p.Asn207CysfsTer27	p.N207Cfs*27	ENST00000342988	NM_005359.5	206	tcTAat/tcat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	50	532	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0032135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	78	496	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	72	640	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
MGA	23269	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	45	557	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536713	120536713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	65	661	1	ENST00000229340.5:c.379C>T	p.Arg127Trp	p.R127W	ENST00000229340	NM_006861.6	127	Cgg/Tgg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119750	70119751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	43	575	0	ENST00000245479.2:c.754dup	p.Leu252ProfsTer44	p.L252Pfs*44	ENST00000245479	NM_000346.3	251	gac/gaCc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374866	45374866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	70	565	0	ENST00000262160.6:c.977A>G	p.Glu326Gly	p.E326G	ENST00000262160	NM_005901.5	326	gAa/gGa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265418	10265418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	81	683	0	ENST00000340748.4:c.1628A>G	p.Asn543Ser	p.N543S	ENST00000340748		543	aAc/aGc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713647	30713649	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0032135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	77	438	0	ENST00000359013.4:c.1048_1050del	p.Thr350del	p.T350del	ENST00000359013	NM_001024847.2	349	atCACc/atc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403570	138403570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	95	715	0	ENST00000289153.2:c.2212G>A	p.Gly738Arg	p.G738R	ENST00000289153	NM_006219.2	738	Ggg/Agg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651881	36651881	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0032135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	56	564	1	ENST00000244741.5:c.3G>A	p.Met1?	p.M1?	ENST00000244741	NM_000389.4	1	atG/atA																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332892	152332892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	57	545	2	ENST00000206249.3:c.1198G>T	p.Gly400Trp	p.G400W	ENST00000206249	NM_000125.3	400	Ggg/Tgg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678541	88678541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145157285		P-0032152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	199	328	0	ENST00000360948.2:c.995C>T	p.Thr332Met	p.T332M	ENST00000360948	NM_001012338.2	332	aCg/aTg																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112769504	112769504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	49	446	1	ENST00000369452.4:c.1456C>T	p.Leu486Phe	p.L486F	ENST00000369452	NM_007373.3	486	Ctt/Ttt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420281	49420292	+	inframe_deletion	In_Frame_Del	DEL	GTAGACCCGCCG	GTAGACCCGCCG	-			P-0032155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	60	568	0	ENST00000301067.7:c.15457_15468del	p.Arg5153_Tyr5156del	p.R5153_Y5156del	ENST00000301067	NM_003482.3	5153	CGGCGGGTCTAC/-																																																																														
RB1	5925	MSKCC	GRCh37	13	48881523	48881523	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	71	250	0	ENST00000267163.4:c.245C>A	p.Ser82Ter	p.S82*	ENST00000267163	NM_000321.2	82	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577588	7577588	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	127	492	0	ENST00000269305.4:c.693del	p.Ile232SerfsTer15	p.I232Sfs*15	ENST00000269305	NM_001126112.2	231	acC/ac																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170002380	170002380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	66	249	0	ENST00000295797.4:c.1199G>T	p.Cys400Phe	p.C400F	ENST00000295797	NM_002740.5	400	tGt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	43	137	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652083	36652084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	221	598	0	ENST00000244741.5:c.209dup	p.Leu71ProfsTer18	p.L71Pfs*18	ENST00000244741	NM_000389.4	69	cgg/cGgg																																																																														
AR	367	MSKCC	GRCh37	X	66941796	66941796	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	13	387	0	ENST00000374690.3:c.2440T>G	p.Phe814Val	p.F814V	ENST00000374690	NM_000044.3	814	Ttc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0032160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	27	603	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	27	437	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118373293	118373293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	23	350	0	ENST00000534358.1:c.6686C>T	p.Ser2229Leu	p.S2229L	ENST00000534358	NM_005933.3	2229	tCa/tTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373312	118373313	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0032160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	23	352	0	ENST00000534358.1:c.6705_6706delinsT	p.Ala2236LeufsTer10	p.A2236Lfs*10	ENST00000534358	NM_005933.3	2235	acCGct/acTct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	232	615	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176710810	176710810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	56	488	0	ENST00000439151.2:c.6032C>T	p.Pro2011Leu	p.P2011L	ENST00000439151	NM_022455.4	2011	cCc/cTc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961538	54961538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	116	458	0	ENST00000312783.6:c.94C>T	p.Pro32Ser	p.P32S	ENST00000312783	NM_198436.1	32	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727098	40727098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	138	561	0	ENST00000373198.4:c.3866C>T	p.Ser1289Phe	p.S1289F	ENST00000373198	NM_133170.3	1289	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55972913	55972913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	25	608	0	ENST00000263923.4:c.1477G>A	p.Gly493Arg	p.G493R	ENST00000263923	NM_002253.2	493	Gga/Aga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255496	16255496	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	146	504	0	ENST00000375759.3:c.2761C>T	p.Gln921Ter	p.Q921*	ENST00000375759	NM_015001.2	921	Cag/Tag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244913	123244913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	92	786	0	ENST00000358487.5:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000358487	NM_000141.4	731	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	44	530	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505128	149505128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	61	523	0	ENST00000261799.4:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000261799	NM_002609.3	563	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68845688	68845688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	39	659	0	ENST00000261769.5:c.934C>T	p.Pro312Ser	p.P312S	ENST00000261769	NM_004360.3	312	Cct/Tct																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271562	15271562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	120	850	1	ENST00000263388.2:c.6877C>T	p.Pro2293Ser	p.P2293S	ENST00000263388	NM_000435.2	2293	Ccc/Tcc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942825	68942825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	93	597	0	ENST00000288368.4:c.637G>A	p.Glu213Lys	p.E213K	ENST00000288368	NM_024870.2	213	Gag/Aag																																																																														
PALB2	79728	MSKCC	GRCh37	16	23614833	23614833	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200283306		P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	97	576	0	ENST00000261584.4:c.3508C>T	p.His1170Tyr	p.H1170Y	ENST00000261584	NM_024675.3	1170	Cat/Tat																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950309	17950309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	116	669	0	ENST00000458235.1:c.1418C>T	p.Ser473Phe	p.S473F	ENST00000458235	NM_000215.3	473	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628376	187628376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	131	762	0	ENST00000441802.2:c.2606C>T	p.Ser869Leu	p.S869L	ENST00000441802	NM_005245.3	869	tCa/tTa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763235	59763235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	16	686	0	ENST00000259008.2:c.2867C>T	p.Ser956Leu	p.S956L	ENST00000259008	NM_032043.2	956	tCa/tTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70451026	70451026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	51	573	0	ENST00000373644.4:c.5866C>T	p.Pro1956Ser	p.P1956S	ENST00000373644	NM_030625.2	1956	Cca/Tca																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291077	10291077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	94	684	0	ENST00000340748.4:c.394C>T	p.Leu132Phe	p.L132F	ENST00000340748		132	Ctt/Ttt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980726	40980726	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	54	366	0	ENST00000373198.4:c.1760C>T	p.Ser587Leu	p.S587L	ENST00000373198	NM_133170.3	587	tCa/tTa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264143	46264143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	66	312	0	ENST00000371998.3:c.1190C>T	p.Ser397Leu	p.S397L	ENST00000371998		397	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770629	40770629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	82	434	0	ENST00000373198.4:c.2753G>A	p.Gly918Glu	p.G918E	ENST00000373198	NM_133170.3	918	gGg/gAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11189879	11189879	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	30	439	0	ENST00000361445.4:c.5630T>A	p.Leu1877His	p.L1877H	ENST00000361445	NM_004958.3	1877	cTc/cAc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28601372	28601372	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	325	635	0	ENST00000253063.3:c.1057C>T	p.Gln353Ter	p.Q353*	ENST00000253063	NM_031459.4	353	Cag/Tag																																																																														
STK40	83931	MSKCC	GRCh37	1	36809739	36809739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	60	567	0	ENST00000373129.3:c.866C>T	p.Ala289Val	p.A289V	ENST00000373129	NM_032017.1	289	gCc/gTc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175996737	175996737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	34	475	0	ENST00000367669.3:c.1700C>T	p.Ser567Phe	p.S567F	ENST00000367669	NM_022457.5	567	tCc/tTc																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612826	228612827	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	67	654	0	ENST00000366696.1:c.200_201delinsTT	p.Pro67Leu	p.P67L	ENST00000366696	NM_003493.2	67	cCC/cTT																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123324078	123324078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	33	571	0	ENST00000358487.5:c.392G>A	p.Gly131Glu	p.G131E	ENST00000358487	NM_000141.4	131	gGa/gAa																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518530	69518530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	245	492	0	ENST00000294312.3:c.115G>A	p.Gly39Ser	p.G39S	ENST00000294312	NM_005117.2	39	Ggc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434663	49434663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	77	771	0	ENST00000301067.7:c.6890C>T	p.Pro2297Leu	p.P2297L	ENST00000301067	NM_003482.3	2297	cCt/cTt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431343	121431343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	163	399	0	ENST00000257555.6:c.547G>A	p.Gly183Arg	p.G183R	ENST00000257555		183	Gga/Aga																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588650	28588650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	38	500	0	ENST00000241453.7:c.2798G>A	p.Arg933Gln	p.R933Q	ENST00000241453	NM_004119.2	933	cGg/cAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954045	32954045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	22	449	0	ENST00000380152.3:c.9112C>G	p.Leu3038Val	p.L3038V	ENST00000380152		3038	Cta/Gta																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972611	32972611	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	20	454	0	ENST00000380152.3:c.9961C>T	p.Gln3321Ter	p.Q3321*	ENST00000380152		3321	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	48942734	48942734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	22	288	0	ENST00000267163.4:c.1121C>T	p.Pro374Leu	p.P374L	ENST00000267163	NM_000321.2	374	cCa/cTa																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675062	40675062	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	115	639	0	ENST00000249776.8:c.26T>C	p.Leu9Pro	p.L9P	ENST00000249776	NM_033286.3	9	cTg/cCg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843456	3843456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	153	561	0	ENST00000262367.5:c.1147C>T	p.Pro383Ser	p.P383S	ENST00000262367	NM_004380.2	383	Ccg/Tcg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274136	10274136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	133	553	0	ENST00000330684.3:c.133G>A	p.Asp45Asn	p.D45N	ENST00000330684	NM_001134407.1	45	Gac/Aac																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968283	15968283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	49	384	0	ENST00000268712.3:c.5002G>A	p.Gly1668Arg	p.G1668R	ENST00000268712	NM_006311.3	1668	Ggg/Agg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10264989	10264990	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	46	401	1	ENST00000340748.4:c.1950_1951delinsTT	p.Arg651Trp	p.R651W	ENST00000340748		650	cgCCgg/cgTTgg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355564	15355566	+	missense_variant	Missense_Mutation	ONP	GGA	GGA	AAT			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	53	637	1	ENST00000263377.2:c.2166_2168delinsATT	p.Pro723Leu	p.P723L	ENST00000263377	NM_058243.2	722	gcTCCg/gcATTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213539	36213539	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	140	929	0	ENST00000222270.7:c.2641C>T	p.Gln881Ter	p.Q881*	ENST00000222270	NM_014727.1	881	Cag/Tag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222498	39222498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	106	657	0	ENST00000402219.2:c.3112C>T	p.Pro1038Ser	p.P1038S	ENST00000402219	NM_005633.3	1038	Cct/Tct																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027076	48027076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	29	467	0	ENST00000234420.5:c.1954G>A	p.Gly652Arg	p.G652R	ENST00000234420	NM_000179.2	652	Ggg/Agg																																																																														
KDR	3791	MSKCC	GRCh37	4	55980390	55980390	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	12	405	0	ENST00000263923.4:c.701T>G	p.Ile234Ser	p.I234S	ENST00000263923	NM_002253.2	234	aTt/aGt																																																																														
TET2	54790	MSKCC	GRCh37	4	106155150	106155150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	34	364	0	ENST00000380013.4:c.51C>A	p.Phe17Leu	p.F17L	ENST00000380013	NM_001127208.2	17	ttC/ttA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510330	187510330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	21	386	0	ENST00000441802.2:c.13183C>T	p.Pro4395Ser	p.P4395S	ENST00000441802	NM_005245.3	4395	Ccg/Tcg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876472	35876472	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	83	613	0	ENST00000303115.3:c.1264C>T	p.Gln422Ter	p.Q422*	ENST00000303115	NM_002185.3	422	Caa/Taa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754834	57754834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	22	375	0	ENST00000274289.3:c.356C>T	p.Ala119Val	p.A119V	ENST00000274289	NM_006622.3	119	gCt/gTt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449596	149449596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	174	632	0	ENST00000286301.3:c.1350G>A	p.Trp450Ter	p.W450*	ENST00000286301	NM_005211.3	450	tgG/tgA																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858177	27858177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	182	440	0	ENST00000359303.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000359303	NM_003535.2	132	Cgt/Tgt																																																																														
STK19	8859	MSKCC	GRCh37	6	31948275	31948275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs140503088		P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	251	720	0	ENST00000375331.2:c.851G>A	p.Trp284Ter	p.W284*	ENST00000375331	NM_004197.1	284	tGg/tAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169192	32169192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	292	672	0	ENST00000375023.3:c.3841G>A	p.Gly1281Arg	p.G1281R	ENST00000375023	NM_004557.3	1281	Gga/Aga																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138201292	138201292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	101	442	0	ENST00000237289.4:c.1991C>T	p.Thr664Ile	p.T664I	ENST00000237289	NM_001270507.1	664	aCc/aTc																																																																														
PARK2	5071	MSKCC	GRCh37	6	161771143	161771144	+	missense_variant	Missense_Mutation	DNP	CC	CC	TG			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	126	523	0	ENST00000366898.1:c.1385_1386delinsCA	p.Trp462Ser	p.W462S	ENST00000366898	NM_004562.2	462	tGG/tCA																																																																														
PARK2	5071	MSKCC	GRCh37	6	162864404	162864404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	94	482	0	ENST00000366898.1:c.109C>T	p.Pro37Ser	p.P37S	ENST00000366898	NM_004562.2	37	Ccg/Tcg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962855	2962855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	149	668	0	ENST00000396946.4:c.2053G>A	p.Gly685Ser	p.G685S	ENST00000396946	NM_032415.4	685	Ggc/Agc																																																																														
TEK	7010	MSKCC	GRCh37	9	27213555	27213555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	29	602	0	ENST00000380036.4:c.2951G>A	p.Gly984Glu	p.G984E	ENST00000380036	NM_000459.3	984	gGa/gAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950087	44950087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	18	280	0	ENST00000377967.4:c.3856C>T	p.Pro1286Ser	p.P1286S	ENST00000377967	NM_021140.2	1286	Cca/Tca																																																																														
ATRX	546	MSKCC	GRCh37	X	76813044	76813044	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	25	343	0	ENST00000373344.5:c.6577C>T	p.Gln2193Ter	p.Q2193*	ENST00000373344	NM_000489.3	2193	Cag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627386	37627386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	64	637	0	ENST00000447079.4:c.1301C>T	p.Ser434Leu	p.S434L	ENST00000447079	NM_015083.1	434	tCa/tTa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	111	526	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095620	178095620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	105	487	0	ENST00000397062.3:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000397062	NM_006164.4	571	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420637	49420637	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	115	522	0	ENST00000301067.7:c.15112G>T	p.Glu5038Ter	p.E5038*	ENST00000301067	NM_003482.3	5038	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576250	7577272	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACCTCATCTCTACTAAAAAAAAAAATAAATAAATAACAAAAAATTAGCTGGGCGTCGGGGCAGGTGCCTGTAATCCCAGCTACTCAGTGGGCTGAGGCAGGAGAATCGCTTGAACCCAGAAGGCGGAGGTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCCAAAAAAAAAAAAAAAAAAAGCAGGCTAGGCTAAGCTATGATGTTCCTTAGATTAGGTGTATTAAATCCATTTTCAACTTACAATATTTTCAACTTACGACGAGTTTATCAGGAAGTAACACCATCGTAAGTCAAGTAGCATCTGTATCAGGCAAAGTCATAGAACCATTTTCATGCTCTCTTTAACAATTTTCTTTTTGAAAGCTGGTCTGGTCCTTTAAAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAA	AACCTCATCTCTACTAAAAAAAAAAATAAATAAATAACAAAAAATTAGCTGGGCGTCGGGGCAGGTGCCTGTAATCCCAGCTACTCAGTGGGCTGAGGCAGGAGAATCGCTTGAACCCAGAAGGCGGAGGTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCCAAAAAAAAAAAAAAAAAAAGCAGGCTAGGCTAAGCTATGATGTTCCTTAGATTAGGTGTATTAAATCCATTTTCAACTTACAATATTTTCAACTTACGACGAGTTTATCAGGAAGTAACACCATCGTAAGTCAAGTAGCATCTGTATCAGGCAAAGTCATAGAACCATTTTCATGCTCTCTTTAACAATTTTCTTTTTGAAAGCTGGTCTGGTCCTTTAAAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAA	-			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	33	6	0	ENST00000269305.4:c.783-116_993+604del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18278061	18278061	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	128	577	0	ENST00000222254.8:c.1681A>T	p.Asn561Tyr	p.N561Y	ENST00000222254	NM_005027.3	561	Aac/Tac																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277990	41278077	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAAGTAAAAAGGAACCAAAGCCTTTAGCAGATGTGTACATTGAAGTCTCAGTTTTTCCTCAAGGGCCTTTTTCTCCTTGTCTCTTA	GGTAAGTAAAAAGGAACCAAAGCCTTTAGCAGATGTGTACATTGAAGTCTCAGTTTTTCCTCAAGGGCCTTTTTCTCCTTGTCTCTTA	-			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	61	373	0	ENST00000349496.5:c.1954+1_1955-1del		p.X652_splice	ENST00000349496	NM_001904.3	652																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41279567	41280589	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTATGTGTCTCATATTTCTCGATTAACTCCAGATCAAGCTAAAGTTCTAAAACTTTTATCAGAAGAGCCGGTTTGCTCATCTGGGAAACCAGTGTTGGCAGAAAAGTAGTGGCTTCAATTAAAAGCAGTTCTTAAATTCCAGTCAGCAACAGTATCTTTAATGGAGCACAGGGAATTCAGAGCCACACAATGAGTAGCAGTAGGATTACACCACCAACAAATACATGCTACTGCTAGGCCTCTGCAGTGCAGGATGTTACAATTTACCTGGCTTTTTATTCTCTTTTTGGCCAGAGGACTCATAATACCTTTGTCTACAAGCTACCCAAGGAAGATAGGAAAACTCCTGTTTCTAGGCTCAGATCTCGGGTGGGTTTTTACATAGTTGCATTATCATCAGGGTTTTCTTGAAAAGCTAATTTAAATCTGGGTAATGAACATGGAGGATGGCATAGACCACTAACAATTATAACTGTCTTACATTTATAACCGCATCTGCTTCTACCTAATTATGAAACCACTAAAGCGCAGATTCTTACTGTGAGAAATAACATGTCAACCCTAAGATAAAATATGTTGAGGTTTCATGGAAATAGTGCCTTTCCTTAGTACTTTTGTGGGTGTCACTTGGCCTTTTTGTCAAGATAGATTACACCTGCCAGACCTCATTATTGTCTTAATCCTCCTTCCCATGACTTCTCACTGCCTAGGTGGTCACACAGTAGATTCCTGCTTCTTCTCCTCGGGAACCCCAAGTCTCTTGACAGGGGTAAATGCAGAGTGTTCAGGGTTAGACTAATGATGTGACTAGGCCCTGCTGGTGTGCCTGTCTGATGGAAATAGATGTTATTTGTGTAGTCTCATGGGTGGCCTGGCACTGAGTAATTACTTGGCTAAAGAAAGCTGGAGGTTGAAGAGGCTAGAAAGCGTTGTTTTCTGACAAGTTTGCTGCTGAACTTTGGATGCCCTAACCTCAGTGTTAACGTCTATGTCTGCTTCTCTCCTCTCTCTTTTGCCTTCCT	GGTATGTGTCTCATATTTCTCGATTAACTCCAGATCAAGCTAAAGTTCTAAAACTTTTATCAGAAGAGCCGGTTTGCTCATCTGGGAAACCAGTGTTGGCAGAAAAGTAGTGGCTTCAATTAAAAGCAGTTCTTAAATTCCAGTCAGCAACAGTATCTTTAATGGAGCACAGGGAATTCAGAGCCACACAATGAGTAGCAGTAGGATTACACCACCAACAAATACATGCTACTGCTAGGCCTCTGCAGTGCAGGATGTTACAATTTACCTGGCTTTTTATTCTCTTTTTGGCCAGAGGACTCATAATACCTTTGTCTACAAGCTACCCAAGGAAGATAGGAAAACTCCTGTTTCTAGGCTCAGATCTCGGGTGGGTTTTTACATAGTTGCATTATCATCAGGGTTTTCTTGAAAAGCTAATTTAAATCTGGGTAATGAACATGGAGGATGGCATAGACCACTAACAATTATAACTGTCTTACATTTATAACCGCATCTGCTTCTACCTAATTATGAAACCACTAAAGCGCAGATTCTTACTGTGAGAAATAACATGTCAACCCTAAGATAAAATATGTTGAGGTTTCATGGAAATAGTGCCTTTCCTTAGTACTTTTGTGGGTGTCACTTGGCCTTTTTGTCAAGATAGATTACACCTGCCAGACCTCATTATTGTCTTAATCCTCCTTCCCATGACTTCTCACTGCCTAGGTGGTCACACAGTAGATTCCTGCTTCTTCTCCTCGGGAACCCCAAGTCTCTTGACAGGGGTAAATGCAGAGTGTTCAGGGTTAGACTAATGATGTGACTAGGCCCTGCTGGTGTGCCTGTCTGATGGAAATAGATGTTATTTGTGTAGTCTCATGGGTGGCCTGGCACTGAGTAATTACTTGGCTAAAGAAAGCTGGAGGTTGAAGAGGCTAGAAAGCGTTGTTTTCTGACAAGTTTGCTGCTGAACTTTGGATGCCCTAACCTCAGTGTTAACGTCTATGTCTGCTTCTCTCCTCTCTCTTTTGCCTTCCT	-			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	56	440	0	ENST00000349496.5:c.2137_2138-36del		p.X713_splice	ENST00000349496	NM_001904.3	713																																																																															
FAT1	2195	MSKCC	GRCh37	4	187518086	187518086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	109	538	0	ENST00000441802.2:c.12608G>T	p.Arg4203Leu	p.R4203L	ENST00000441802	NM_005245.3	4203	cGt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	132	478	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984914	9984914	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	38	459	0	ENST00000330684.3:c.1051A>G	p.Thr351Ala	p.T351A	ENST00000330684	NM_001134407.1	351	Act/Gct																																																																														
APC	324	MSKCC	GRCh37	5	112175900	112175901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	55	208	0	ENST00000257430.4:c.4610dup	p.Glu1538ArgfsTer6	p.E1538Rfs*6	ENST00000257430	NM_000038.5	1537	aca/aCca																																																																														
RAD50	10111	MSKCC	GRCh37	5	131939182	131939182	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0032188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	84	436	2	ENST00000265335.6:c.2397+1G>C		p.X799_splice	ENST00000265335		799																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0032189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	155	436	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491389	18491390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	96	204	0	ENST00000266497.5:c.1309dupA	p.Ile437AsnfsTer19	p.I437Nfs*19	ENST00000266497		434	-/A																																																																														
MTOR	2475	MSKCC	GRCh37	1	11270931	11270931	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	71	312	0	ENST00000361445.4:c.3594del	p.Leu1199TrpfsTer32	p.L1199Wfs*32	ENST00000361445	NM_004958.3	1198	gtT/gt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127769	64127770	+	missense_variant	Missense_Mutation	DNP	GT	GT	TG			P-0032189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	95	377	0	ENST00000334205.4:c.262_263delinsTG	p.Val88Trp	p.V88W	ENST00000334205	NM_003942.2	88	GTg/TGg																																																																														
APC	324	MSKCC	GRCh37	5	112163698	112163698	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	28	245	0	ENST00000257430.4:c.1621del	p.Gln541SerfsTer8	p.Q541Sfs*8	ENST00000257430	NM_000038.5	541	Cag/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	51	399	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	32	547	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295222	1295222	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0032190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	41	218	0				ENST00000310581	NM_198253.2																																																																																
AR	367	MSKCC	GRCh37	X	66765142	66765142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	49	139	0	ENST00000374690.3:c.154G>A	p.Ala52Thr	p.A52T	ENST00000374690	NM_000044.3	52	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0032191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	43	240	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	120	482	2	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735407	204735407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	80	309	0	ENST00000302823.3:c.208C>T	p.Arg70Trp	p.R70W	ENST00000302823	NM_005214.4	70	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	68	277	0	ENST00000342988.3:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000342988	NM_005359.5	419	Ggg/Agg																																																																														
APC	324	MSKCC	GRCh37	5	112128175	112128175	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	32	295	0	ENST00000257430.4:c.679del	p.Asp227ThrfsTer66	p.D227Tfs*66	ENST00000257430	NM_000038.5	226	aaG/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0032192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	299	589	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
MSH3	4437	MSKCC	GRCh37	5	79950724	79950725	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGCAGCGC			P-0032192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	10	176	1	ENST00000265081.6:c.181_189dup	p.Ala61_Pro63dup	p.A61_P63dup	ENST00000265081	NM_002439.4	61	gcc/gCCGCAGCGCcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	348	432	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	109	601	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0032195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	36	162	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0032195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	36	162	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604776	48604776	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	98	335	0	ENST00000342988.3:c.1598T>C	p.Leu533Pro	p.L533P	ENST00000342988	NM_005359.5	533	cTc/cCc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	22	329	1	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164508	47164508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201756643		P-0032227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	31	420	0	ENST00000409792.3:c.1618C>T	p.Arg540Ter	p.R540*	ENST00000409792	NM_014159.6	540	Cga/Tga																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761468	59761468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	48	423	0	ENST00000259008.2:c.2939C>T	p.Ala980Val	p.A980V	ENST00000259008	NM_032043.2	980	gCa/gTa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20490422	20490422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	20	430	0	ENST00000346618.3:c.1159C>T	p.His387Tyr	p.H387Y	ENST00000346618	NM_001949.4	387	Cat/Tat																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149501461	149501461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	48	558	0	ENST00000261799.4:c.2326G>A	p.Asp776Asn	p.D776N	ENST00000261799	NM_002609.3	776	Gat/Aat																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	28	434	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	27	396	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	66	482	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	50	471	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729968	30729968	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	26	239	0	ENST00000359013.4:c.1564C>T	p.Arg522Ter	p.R522*	ENST00000359013	NM_001024847.2	522	Cga/Tga																																																																														
CD276	80381	MSKCC	GRCh37	15	74000769	74000769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	32	519	2	ENST00000318443.5:c.1459G>A	p.Val487Met	p.V487M	ENST00000318443	NM_001024736.1	487	Gtg/Atg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371801	55371801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	23	144	0	ENST00000297316.4:c.491C>T	p.Ala164Val	p.A164V	ENST00000297316	NM_022454.3	164	gCg/gTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	68	517	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873081	134873081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	29	478	3	ENST00000398015.3:c.1385G>A	p.Gly462Asp	p.G462D	ENST00000398015	NM_004441.4	462	gGc/gAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	46	474	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	30	362	0	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793054	33793056	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	10	217	0	ENST00000498907.2:c.265_267del	p.Glu89del	p.E89del	ENST00000498907	NM_004364.3	89	GAG/-																																																																														
ARID2	196528	MSKCC	GRCh37	12	46298723	46298724	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	30	257	0	ENST00000334344.6:c.5371_5372del	p.Lys1791GlufsTer3	p.K1791Efs*3	ENST00000334344	NM_152641.2	1790	ttAAag/ttag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170147	32170147	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	24	597	2	ENST00000375023.3:c.3461delG	p.Gly1154AlafsTer150	p.G1154Afs*150	ENST00000375023	NM_004557.3	1154	gGc/gc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120805882	120805882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	58	557	1	ENST00000257552.2:c.196G>A	p.Val66Ile	p.V66I	ENST00000257552	NM_002442.3	66	Gtc/Atc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	61	486	0	ENST00000304494.5:c.387C>G	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	61	486	0	ENST00000304494.5:c.387C>G	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taG																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941486	71941486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	55	611	0	ENST00000298229.2:c.1171A>G	p.Lys391Glu	p.K391E	ENST00000298229	NM_001567.3	391	Aag/Gag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378639	25378639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	53	505	0	ENST00000256078.4:c.359T>C	p.Leu120Ser	p.L120S	ENST00000256078	NM_033360.2	120	tTg/tCg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123891	46123892	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	28	225	0	ENST00000334344.6:c.159_160delAG	p.Arg53SerfsTer12	p.R53Sfs*12	ENST00000334344	NM_152641.2	53	AGa/a																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964084	28964084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	24	463	0	ENST00000282397.4:c.1818G>T	p.Lys606Asn	p.K606N	ENST00000282397	NM_002019.4	606	aaG/aaT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3823801	3823801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	39	372	0	ENST00000262367.5:c.2414C>T	p.Ala805Val	p.A805V	ENST00000262367	NM_004380.2	805	gCg/gTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004808	16004808	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76080188		P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	51	538	1	ENST00000268712.3:c.2446G>A	p.Ala816Thr	p.A816T	ENST00000268712	NM_006311.3	816	Gct/Act																																																																														
MALT1	10892	MSKCC	GRCh37	18	56409168	56409168	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	35	426	0	ENST00000348428.3:c.1675G>T	p.Ala559Ser	p.A559S	ENST00000348428	NM_006785.3	559	Gca/Tca																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140378	50140378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	33	356	0	ENST00000246792.3:c.163G>A	p.Val55Met	p.V55M	ENST00000246792	NM_006270.3	55	Gtg/Atg																																																																														
ALK	238	MSKCC	GRCh37	2	29474012	29474012	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	30	613	0	ENST00000389048.3:c.2163A>C	p.Lys721Asn	p.K721N	ENST00000389048	NM_004304.4	721	aaA/aaC																																																																														
KIT	3815	MSKCC	GRCh37	4	55564470	55564470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	32	351	0	ENST00000288135.5:c.358G>A	p.Val120Ile	p.V120I	ENST00000288135	NM_000222.2	120	Gtt/Att																																																																														
APC	324	MSKCC	GRCh37	5	112174990	112174996	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTCT	AAGTTCT	-			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	17	200	0	ENST00000257430.4:c.3699_3705del	p.Ser1234HisfsTer29	p.S1234Hfs*29	ENST00000257430	NM_000038.5	1233	ccAAGTTCT/cc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680172	30680172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	61	658	0	ENST00000376406.3:c.1547C>T	p.Ser516Phe	p.S516F	ENST00000376406	NM_014641.2	516	tCc/tTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187531	32187531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	23	565	1	ENST00000375023.3:c.1348G>A	p.Gly450Ser	p.G450S	ENST00000375023	NM_004557.3	450	Ggt/Agt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32813532	32813532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	63	326	0	ENST00000354258.4:c.2251C>T	p.Arg751Trp	p.R751W	ENST00000354258	NM_000593.5	751	Cgg/Tgg																																																																														
MET	4233	MSKCC	GRCh37	7	116339709	116339709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	47	292	0	ENST00000397752.3:c.571C>T	p.Arg191Trp	p.R191W	ENST00000397752	NM_000245.2	191	Cgg/Tgg																																																																														
NBN	4683	MSKCC	GRCh37	8	90955584	90955584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	26	367	0	ENST00000265433.3:c.2081C>A	p.Pro694His	p.P694H	ENST00000265433	NM_002485.4	694	cCt/cAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460511	8460511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	20	417	1	ENST00000356435.5:c.3775C>T	p.Pro1259Ser	p.P1259S	ENST00000356435		1259	Cca/Tca																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114905849	114905849	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	12	342	0	ENST00000543371.1:c.868A>G	p.Met290Val	p.M290V	ENST00000543371	NM_001198531.1	290	Atg/Gtg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434898	110434898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	44	727	0	ENST00000375856.3:c.3503A>G	p.Asn1168Ser	p.N1168S	ENST00000375856	NM_003749.2	1168	aAc/aGc																																																																														
CD276	80381	MSKCC	GRCh37	15	73996131	73996131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	27	686	1	ENST00000318443.5:c.865G>T	p.Asp289Tyr	p.D289Y	ENST00000318443	NM_001024736.1	289	Gac/Tac																																																																														
SRC	6714	MSKCC	GRCh37	20	36030080	36030080	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0032235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	32	401	0	ENST00000358208.4:c.1115A>G	p.Gln372Arg	p.Q372R	ENST00000358208		372	cAg/cGg																																																																														
PGR	5241	MSKCC	GRCh37	11	100999161	100999161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	160	556	2	ENST00000325455.5:c.641C>T	p.Pro214Leu	p.P214L	ENST00000325455	NM_001202474.3	214	cCg/cTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066901	30066901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	80	367	0	ENST00000331968.5:c.2230G>A	p.Val744Met	p.V744M	ENST00000331968	NM_002742.2	744	Gtg/Atg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061143	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	GCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	-			P-0032250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	95	119	0	ENST00000250448.2:c.787_846del	p.Gln263_Ser282del	p.Q263_S282del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGC/-																																																																														
PIM1	5292	MSKCC	GRCh37	6	37138997	37138997	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	178	624	0	ENST00000373509.5:c.337C>G	p.Pro113Ala	p.P113A	ENST00000373509	NM_002648.3	113	Ccc/Gcc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879525	151879526	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0032250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	124	328	0	ENST00000262189.6:c.5419_5420del	p.Gln1807GlufsTer20	p.Q1807Efs*20	ENST00000262189	NM_170606.2	1807	CAg/g																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061210	38061213	+	missense_variant	Missense_Mutation	ONP	AAGT	AAGT	GAGA			P-0032250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	105	391	0	ENST00000250448.2:c.776_779delinsTCTC	p.Tyr259_Leu260delinsPheSer	p.Y259_L260delinsFS	ENST00000250448	NM_004496.3	259	tACTTg/tTCTCg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481806	56481806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	148	499	0	ENST00000267101.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000267101	NM_001982.3	245	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	155	510	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696730	47696730	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	169	311	0	ENST00000347630.2:c.218C>G	p.Pro73Arg	p.P73R	ENST00000347630	NM_001007230.1	73	cCc/cGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	95	360	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	261	656	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039668	47039668	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	52	382	0	ENST00000329236.7:c.887del	p.Gly296AlafsTer111	p.G296Afs*111	ENST00000329236	NM_001204466.1	296	Ggc/gc																																																																														
MET	4233	MSKCC	GRCh37	7	116411902	116411902	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0032270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	256	727	1	ENST00000397752.3:c.2888-1G>A		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
MGA	23269	MSKCC	GRCh37	15	42003311	42003311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	41	559	0	ENST00000219905.7:c.2848C>T	p.Gln950Ter	p.Q950*	ENST00000219905	NM_001164273.1	950	Cag/Tag																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165719	118165719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	22	377	0	ENST00000369448.3:c.229G>A	p.Gly77Ser	p.G77S	ENST00000369448	NM_017709.3	77	Ggc/Agc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112230	115112230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	17	246	0	ENST00000257566.3:c.1510G>T	p.Ala504Ser	p.A504S	ENST00000257566	NM_016569.3	504	Gcc/Tcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29654656	29654656	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	29	264	0	ENST00000358273.4:c.5409del	p.Ile1803MetfsTer60	p.I1803Mfs*60	ENST00000358273	NM_001042492.2	1803	aTt/at																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696642	47696642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	115	553	0	ENST00000347630.2:c.306C>G	p.Phe102Leu	p.F102L	ENST00000347630	NM_001007230.1	102	ttC/ttG																																																																														
CDC73	79577	MSKCC	GRCh37	1	193094324	193094324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	129	476	0	ENST00000367435.3:c.214C>A	p.Pro72Thr	p.P72T	ENST00000367435	NM_024529.4	72	Cct/Act																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246117	46246117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	67	373	0	ENST00000334344.6:c.4211A>C	p.Gln1404Pro	p.Q1404P	ENST00000334344	NM_152641.2	1404	cAa/cCa																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495646	72495646	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0032314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	62	289	0	ENST00000477973.2:c.423+1G>C		p.X141_splice	ENST00000477973	NM_012234.5	141																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186505300	186505302	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0032354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	36	383	0	ENST00000323963.5:c.928_930del	p.Lys310del	p.K310del	ENST00000323963		309	cAGAag/cag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535284	66535284	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	40	567	0	ENST00000273854.3:c.177C>G	p.Asn59Lys	p.N59K	ENST00000273854	NM_004439.5	59	aaC/aaG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	4663	362	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	305	717	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112090657	112090657	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs145945630		P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	60	277	0	ENST00000257430.4:c.70C>T	p.Arg24Ter	p.R24*	ENST00000257430	NM_000038.5	24	Cga/Tga																																																																														
JUN	3725	MSKCC	GRCh37	1	59248526	59248526	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	315	554	0	ENST00000371222.2:c.217T>G	p.Ser73Ala	p.S73A	ENST00000371222	NM_002228.3	73	Tcg/Gcg																																																																														
RB1	5925	MSKCC	GRCh37	13	49037924	49037924	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	203	406	0	ENST00000267163.4:c.2167delA	p.Ile723SerfsTer3	p.I723Sfs*3	ENST00000267163	NM_000321.2	722	Aaa/aa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021290	31021290	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	91	486	0	ENST00000375687.4:c.1289C>G	p.Ser430Ter	p.S430*	ENST00000375687	NM_015338.5	430	tCa/tGa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32790075	32790075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	30	201	0	ENST00000374899.4:c.1953G>A	p.Met651Ile	p.M651I	ENST00000374899	NM_018833.2	651	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	93	611	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	101	434	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593502	48593502	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	27	256	0	ENST00000342988.3:c.1253del	p.Ala418ValfsTer18	p.A418Vfs*18	ENST00000342988	NM_005359.5	418	gCt/gt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	89	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	162	687	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151842344	151842344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	43	355	0	ENST00000262189.6:c.14068C>T	p.Arg4690Ter	p.R4690*	ENST00000262189	NM_170606.2	4690	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0037587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	47	445	0	ENST00000256078.4:c.34_35delGGinsTA	p.Gly12Tyr	p.G12Y	ENST00000256078	NM_033360.2	12	GGt/TAt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28979956	28979956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	44	560	1	ENST00000282397.4:c.1512C>A	p.Ser504Arg	p.S504R	ENST00000282397	NM_002019.4	504	agC/agA																																																																														
MGA	23269	MSKCC	GRCh37	15	42005641	42005641	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	60	380	0	ENST00000219905.7:c.3379del	p.Glu1127ArgfsTer6	p.E1127Rfs*6	ENST00000219905	NM_001164273.1	1126	aGg/ag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600426	10600426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			638	87	688	0	ENST00000171111.5:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000171111	NM_203500.1	477	Ggc/Agc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143352321	143352321	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0037587-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	31	503	0	ENST00000262992.4:c.91+1del		p.X31_splice	ENST00000262992	NM_001101669.1	31																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249016	55249017	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCACG			P-0039995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	81	180	0	ENST00000275493.2:c.2315_2320dup	p.His773_Val774insAlaHis	p.H773_V774insAH	ENST00000275493	NM_005228.3	772	ccc/cCCCACGcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0040011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	101	534	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	24	435	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	27	435	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657633	37657633	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0040011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	98	623	0	ENST00000447079.4:c.2550T>A	p.Cys850Ter	p.C850*	ENST00000447079	NM_015083.1	850	tgT/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112174412	112174413	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	37	320	0	ENST00000257430.4:c.3124dup	p.Ser1042LysfsTer6	p.S1042Kfs*6	ENST00000257430	NM_000038.5	1041	caa/cAaa																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27840091	27840091	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0040011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	63	407	0	ENST00000328488.2:c.3G>A	p.Met1?	p.M1?	ENST00000328488	NM_003533.2	1	atG/atA																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281506	49281506	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	177	504	0	ENST00000282018.3:c.553A>T	p.Thr185Ser	p.T185S	ENST00000282018	NM_020377.2	185	Aca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0040143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	513	609	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	44	333	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	115	535	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	159	608	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
DDR2	4921	MSKCC	GRCh37	1	162725069	162725069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	33	404	0	ENST00000367921.3:c.541G>C	p.Glu181Gln	p.E181Q	ENST00000367921	NM_006182.2	181	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	168	610	0	ENST00000269305.4:c.776A>C	p.Asp259Ala	p.D259A	ENST00000269305	NM_001126112.2	259	gAc/gCc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018257	48018257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	39	462	0	ENST00000234420.5:c.452A>G	p.Tyr151Cys	p.Y151C	ENST00000234420	NM_000179.2	151	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112178376	112178376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	12	411	0	ENST00000257430.4:c.7085G>T	p.Gly2362Val	p.G2362V	ENST00000257430	NM_000038.5	2362	gGa/gTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410792	63410792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	56	639	1	ENST00000330258.3:c.2375C>T	p.Ser792Phe	p.S792F	ENST00000330258	NM_152424.3	792	tCt/tTt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46276041	46276044	+	protein_altering_variant	In_Frame_Del	DEL	CATG	CATG	T			P-0040162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	73	559	0	ENST00000371998.3:c.3477_3480delinsT	p.Met1160del	p.M1160del	ENST00000371998		1159	atCATG/atT																																																																														
SYK	6850	MSKCC	GRCh37	9	93624616	93624616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201857010		P-0040168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	199	507	0	ENST00000375746.1:c.707C>T	p.Thr236Met	p.T236M	ENST00000375746	NM_001174167.1	236	aCg/aTg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30293197	30293197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	19	384	0	ENST00000322652.5:c.487G>A	p.Gly163Ser	p.G163S	ENST00000322652	NM_015355.2	163	Ggt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	150	233	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	141	408	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0040369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	142	379	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439948	56439948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	199	432	0	ENST00000407977.2:c.644C>A	p.Ala215Asp	p.A215D	ENST00000407977		215	gCt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971117	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0040369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	131	275	0	ENST00000304494.5:c.241_242delinsAA	p.Pro81Asn	p.P81N	ENST00000304494	NM_000077.4	81	CCc/AAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971117	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0040369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	131	275	0	ENST00000304494.5:c.241_242delinsAA	p.Pro81Asn	p.P81N	ENST00000304494	NM_000077.4	81	CCc/AAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971117	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0040369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	131	275	0	ENST00000304494.5:c.241_242delinsAA	p.Pro81Asn	p.P81N	ENST00000304494	NM_000077.4	81	CCc/AAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0040371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	226	478	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	247	484	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741579	17741579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	97	246	1	ENST00000250003.3:c.250C>T	p.Pro84Ser	p.P84S	ENST00000250003	NM_002478.4	84	Ccc/Tcc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022792	31022792	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	205	398	0	ENST00000375687.4:c.2277C>A	p.Cys759Ter	p.C759*	ENST00000375687	NM_015338.5	759	tgC/tgA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468363	89468363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	25	155	0	ENST00000336596.2:c.1897G>A	p.Gly633Arg	p.G633R	ENST00000336596	NM_005233.5	633	Gga/Aga																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374930	149374930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	140	401	0	ENST00000360632.3:c.164A>G	p.Glu55Gly	p.E55G	ENST00000360632	NM_015472.4	55	gAg/gGg																																																																														
APC	324	MSKCC	GRCh37	5	112175707	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	AAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTA	AAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTA	-			P-0040371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	97	223	0	ENST00000257430.4:c.4416_4464del	p.Asn1473TyrfsTer18	p.N1473Yfs*18	ENST00000257430	NM_000038.5	1472	gtAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTA/gt																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43738986	43738986	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0040371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	176	296	0	ENST00000523873.1:c.3G>T	p.Met1?	p.M1?	ENST00000523873		1	atG/atT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955046	93955046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	35	195	0	ENST00000369303.4:c.2852C>A	p.Ser951Tyr	p.S951Y	ENST00000369303	NM_004440.3	951	tCc/tAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	169	288	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	107	452	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597431	10597431	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	162	447	1	ENST00000171111.5:c.1772G>A	p.Trp591Ter	p.W591*	ENST00000171111	NM_203500.1	591	tGg/tAg																																																																														
ALK	238	MSKCC	GRCh37	2	29419652	29419652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	43	280	0	ENST00000389048.3:c.4148T>C	p.Ile1383Thr	p.I1383T	ENST00000389048	NM_004304.4	1383	aTt/aCt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31508850	31508850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	22	363	1	ENST00000344624.3:c.1465G>A	p.Glu489Lys	p.E489K	ENST00000344624		489	Gag/Aag																																																																														
LYN	4067	MSKCC	GRCh37	8	56863290	56863290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	131	380	0	ENST00000519728.1:c.434C>A	p.Ala145Glu	p.A145E	ENST00000519728	NM_002350.3	145	gCa/gAa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	193	450	2	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045000	47045000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	298	271	0	ENST00000329236.7:c.2092C>T	p.Arg698Trp	p.R698W	ENST00000329236	NM_001204466.1	698	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108196143	108196143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	102	324	2	ENST00000278616.4:c.6679C>T	p.Arg2227Cys	p.R2227C	ENST00000278616	NM_000051.3	2227	Cgc/Tgc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602293	10602293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	287	520	0	ENST00000171111.5:c.1285G>A	p.Gly429Ser	p.G429S	ENST00000171111	NM_203500.1	429	Ggc/Agc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	321	266	0				ENST00000310581	NM_198253.2																																																																																
ELF3	1999	MSKCC	GRCh37	1	201981186	201981187	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0040377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	306	542	1	ENST00000359651.3:c.267dup	p.Ile90HisfsTer2	p.I90Hfs*2	ENST00000359651		89	gcc/gCcc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981788	201981788	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	258	564	0	ENST00000359651.3:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000359651		167	Cag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654709	67654709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	145	307	0	ENST00000264010.4:c.1196G>A	p.Arg399Lys	p.R399K	ENST00000264010	NM_006565.3	399	aGa/aAa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1957889	1957889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	198	357	0	ENST00000382891.5:c.2855G>C	p.Arg952Thr	p.R952T	ENST00000382891	NM_133335.3	952	aGa/aCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845886	151845886	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	249	436	0	ENST00000262189.6:c.13126G>T	p.Glu4376Ter	p.E4376*	ENST00000262189	NM_170606.2	4376	Gag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845947	151845947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	290	379	0	ENST00000262189.6:c.13065G>C	p.Met4355Ile	p.M4355I	ENST00000262189	NM_170606.2	4355	atG/atC																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942804	44942810	+	frameshift_variant	Frame_Shift_Del	DEL	CATGAAC	CATGAAC	-			P-0040377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	103	209	0	ENST00000377967.4:c.3384_3390del	p.Met1129GlnfsTer6	p.M1129Qfs*6	ENST00000377967	NM_021140.2	1128	ggCATGAAC/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	483	452	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220371	1220372	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0040379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	306	348	0	ENST00000326873.7:c.465-1_465delinsTT		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602748	10602748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	450	474	0	ENST00000171111.5:c.830C>T	p.Thr277Met	p.T277M	ENST00000171111	NM_203500.1	277	aCg/aTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258610	16258610	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	153	364	2	ENST00000375759.3:c.5875C>T	p.Arg1959Ter	p.R1959*	ENST00000375759	NM_015001.2	1959	Cga/Tga																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115263303	115263303	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	61	386	0	ENST00000438362.2:c.2047G>C	p.Val683Leu	p.V683L	ENST00000438362	NM_001242891.1	683	Gtt/Ctt																																																																														
RET	5979	MSKCC	GRCh37	10	43612146	43612147	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0040379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	81	225	1	ENST00000355710.3:c.2251_2252delinsCT	p.Gly751Leu	p.G751L	ENST00000355710	NM_020975.4	751	GGg/CTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426952	49426952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	199	390	0	ENST00000301067.7:c.11536G>A	p.Gly3846Ser	p.G3846S	ENST00000301067	NM_003482.3	3846	Ggc/Agc																																																																														
POLE	5426	MSKCC	GRCh37	12	133238138	133238138	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	179	320	0	ENST00000320574.5:c.2839del	p.Glu947LysfsTer6	p.E947Kfs*6	ENST00000320574	NM_006231.2	947	Gaa/aa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041474	42041474	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	137	341	0	ENST00000219905.7:c.5669G>C	p.Gly1890Ala	p.G1890A	ENST00000219905	NM_001164273.1	1890	gGa/gCa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724302	117724302	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0040379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	121	312	0	ENST00000368508.3:c.577G>C	p.Val193Leu	p.V193L	ENST00000368508	NM_002944.2	193	Gtt/Ctt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729433	41729433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	117	384	0	ENST00000242208.4:c.1096C>G	p.Leu366Val	p.L366V	ENST00000242208	NM_002192.2	366	Ctg/Gtg																																																																														
XIAP	331	MSKCC	GRCh37	X	123020282	123020282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	217	289	0	ENST00000355640.3:c.770C>G	p.Pro257Arg	p.P257R	ENST00000355640		257	cCa/cGa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220522	123220522	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	271	343	1	ENST00000218089.9:c.3179T>C	p.Ile1060Thr	p.I1060T	ENST00000218089	NM_001042749.1	1060	aTt/aCt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			863	745	811	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0023157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	530	591	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851074	63851074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143074852		P-0023157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	179	748	1	ENST00000279873.7:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000279873	NM_032199.2	618	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	455	828	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729601	41729601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	161	655	1	ENST00000242208.4:c.928C>T	p.Arg310Trp	p.R310W	ENST00000242208	NM_002192.2	310	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223144	5223144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			910	52	1200	1	ENST00000357368.4:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000357368	NM_002850.3	887	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1386	336	862	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267276	41267299	+	inframe_deletion	In_Frame_Del	DEL	ACAAAACAAATGTTAAATTCTTGG	ACAAAACAAATGTTAAATTCTTGG	-			P-0023157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	133	439	0	ENST00000349496.5:c.860_883del	p.Asn287_Ala295delinsThr	p.N287_A295delinsT	ENST00000349496	NM_001904.3	287	aACAAAACAAATGTTAAATTCTTGGct/act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0040005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	29	520	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	120	806	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	32	706	0	ENST00000263967.3:c.278G>C	p.Arg93Pro	p.R93P	ENST00000263967	NM_006218.2	93	cGg/cCg																																																																														
RET	5979	MSKCC	GRCh37	10	43612074	43612074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	63	960	0	ENST00000355710.3:c.2179G>C	p.Gly727Arg	p.G727R	ENST00000355710	NM_020975.4	727	Gga/Cga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411285	63411285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	83	1061	0	ENST00000330258.3:c.1882G>T	p.Ala628Ser	p.A628S	ENST00000330258	NM_152424.3	628	Gcc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	62	491	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TET1	80312	MSKCC	GRCh37	10	70450882	70450882	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200074832		P-0040010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	97	644	0	ENST00000373644.4:c.5722G>T	p.Ala1908Ser	p.A1908S	ENST00000373644	NM_030625.2	1908	Gct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	80	284	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	87	340	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526498	66526498	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	266	388	0	ENST00000358598.2:c.1054C>T	p.Arg352Ter	p.R352*	ENST00000358598	NM_212471.2	352	Cga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724766	43724766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	46	486	0	ENST00000382044.4:c.3301G>T	p.Val1101Phe	p.V1101F	ENST00000382044	NM_001141980.1	1101	Gtc/Ttc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17125842	17125842	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	194	610	1	ENST00000285071.4:c.752G>A	p.Trp251Ter	p.W251*	ENST00000285071	NM_144997.5	251	tGg/tAg																																																																														
APC	324	MSKCC	GRCh37	5	112175136	112175136	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	83	159	0	ENST00000257430.4:c.3845C>G	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112177241	112177244	+	frameshift_variant	Frame_Shift_Del	DEL	AATG	AATG	-			P-0040054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	60	265	0	ENST00000257430.4:c.5952_5955del	p.Glu1985LeufsTer58	p.E1985Lfs*58	ENST00000257430	NM_000038.5	1984	AATGaa/aa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0040055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	169	267	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591891	48591891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936394		P-0040055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	66	318	0	ENST00000342988.3:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000342988	NM_005359.5	352	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	388	549	1	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46254724	46254743	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGTAAAAAGTAAATGGCAA	TTGTAAAAAGTAAATGGCAA	-			P-0040055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	147	184	0	ENST00000334344.6:c.4916_4922+13del		p.X1639_splice	ENST00000334344	NM_152641.2	1639																																																																															
APC	324	MSKCC	GRCh37	5	112163652	112163652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	74	187	0	ENST00000257430.4:c.1575C>A	p.Cys525Ter	p.C525*	ENST00000257430	NM_000038.5	525	tgC/tgA																																																																														
MED12	9968	MSKCC	GRCh37	X	70340823	70340823	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0040055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	207	364	0	ENST00000374080.3:c.556T>C	p.Trp186Arg	p.W186R	ENST00000374080		186	Tgg/Cgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0040056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	236	432	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816888	32816888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	737	396	0	ENST00000354258.4:c.1436G>A	p.Gly479Asp	p.G479D	ENST00000354258	NM_000593.5	479	gGt/gAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	114	338	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	291	659	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	73	411	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	72	182	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777676	9777676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	179	525	1	ENST00000377346.4:c.1012C>T	p.Arg338Trp	p.R338W	ENST00000377346	NM_005026.3	338	Cgg/Tgg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120469123	120469123	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	161	364	0	ENST00000256646.2:c.4004C>T	p.Pro1335Leu	p.P1335L	ENST00000256646	NM_024408.3	1335	cCg/cTg																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94224036	94224036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	97	409	0	ENST00000323929.3:c.116C>T	p.Thr39Ile	p.T39I	ENST00000323929	NM_005591.3	39	aCa/aTa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125499143	125499143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	86	386	0	ENST00000428830.2:c.306G>T	p.Met102Ile	p.M102I	ENST00000428830	NM_001114121.2	102	atG/atT																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981632	70981632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1439	292	759	0	ENST00000276594.2:c.464C>T	p.Ala155Val	p.A155V	ENST00000276594	NM_024504.3	155	gCg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	92	398	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	144	582	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164462	36164463	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	78	321	0	ENST00000300305.3:c.1412_1413del	p.Arg471ProfsTer128	p.R471Pfs*128	ENST00000300305		471	cGC/c																																																																														
KDR	3791	MSKCC	GRCh37	4	55946152	55946152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	75	365	1	ENST00000263923.4:c.4027C>T	p.Leu1343Phe	p.L1343F	ENST00000263923	NM_002253.2	1343	Ctc/Ttc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444370	49444370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	123	656	0	ENST00000301067.7:c.3001del	p.Leu1001PhefsTer16	p.L1001Ffs*16	ENST00000301067	NM_003482.3	1001	Ctt/tt																																																																														
CCND2	894	MSKCC	GRCh37	12	4383376	4383376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	108	545	0	ENST00000261254.3:c.170G>C	p.Arg57Thr	p.R57T	ENST00000261254	NM_001759.3	57	aGa/aCa																																																																														
ALK	238	MSKCC	GRCh37	2	29551216	29551216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	85	507	0	ENST00000389048.3:c.1414C>T	p.Arg472Trp	p.R472W	ENST00000389048	NM_004304.4	472	Cgg/Tgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948320	71948320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	166	790	0	ENST00000298229.2:c.3032C>T	p.Ser1011Phe	p.S1011F	ENST00000298229	NM_001567.3	1011	tCt/tTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893343	32893343	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	54	304	0	ENST00000380152.3:c.197A>G	p.Gln66Arg	p.Q66R	ENST00000380152		66	cAa/cGa																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18274078	18274078	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	38	544	0	ENST00000222254.8:c.1296G>C	p.Gln432His	p.Q432H	ENST00000222254	NM_005027.3	432	caG/caC																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99152241	99152241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	37	248	0	ENST00000074304.5:c.320C>G	p.Ser107Cys	p.S107C	ENST00000074304	NM_001134224.1	107	tCt/tGt																																																																														
RHOA	387	MSKCC	GRCh37	3	49412985	49412985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	82	626	0	ENST00000418115.1:c.38A>G	p.Asp13Gly	p.D13G	ENST00000418115	NM_001664.2	13	gAt/gGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942707	44942707	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	38	386	0	ENST00000377967.4:c.3288del	p.Trp1096Ter	p.W1096*	ENST00000377967	NM_021140.2	1096	tGg/tg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966776	44966776	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0040117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	49	407	0	ENST00000377967.4:c.4000T>A	p.Cys1334Ser	p.C1334S	ENST00000377967	NM_021140.2	1334	Tgt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	382	593	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665310	176665310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	224	412	0	ENST00000439151.2:c.3994G>A	p.Glu1332Lys	p.E1332K	ENST00000439151	NM_022455.4	1332	Gag/Aag																																																																														
BCL6	604	MSKCC	GRCh37	3	187446203	187446203	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	116	699	0	ENST00000232014.4:c.1485del	p.Thr496ArgfsTer94	p.T496Rfs*94	ENST00000232014	NM_001130845.1	495	ccC/cc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497359	149497359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	178	640	1	ENST00000261799.4:c.2959C>T	p.Arg987Trp	p.R987W	ENST00000261799	NM_002609.3	987	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681568	117681569	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0040118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	33	280	1	ENST00000368508.3:c.3382-1_3382delinsTT		p.X1128_splice	ENST00000368508	NM_002944.2	1128																																																																															
EP300	2033	MSKCC	GRCh37	22	41564766	41564766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	83	521	0	ENST00000263253.7:c.4067G>A	p.Arg1356Gln	p.R1356Q	ENST00000263253	NM_001429.3	1356	cGa/cAa																																																																														
JUN	3725	MSKCC	GRCh37	1	59248532	59248532	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	136	615	1	ENST00000371222.2:c.211C>G	p.Leu71Val	p.L71V	ENST00000371222	NM_002228.3	71	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	600	580	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022904	27022905	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	109	62	0	ENST00000324856.7:c.11dup	p.Val5GlyfsTer106	p.V5Gfs*106	ENST00000324856	NM_006015.4	4	cag/cAag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881425	37881425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	443	586	0	ENST00000269571.5:c.2617G>A	p.Asp873Asn	p.D873N	ENST00000269571		873	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0040177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	1066	620	1	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158731	26158731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	68	285	0	ENST00000289316.2:c.334G>T	p.Val112Leu	p.V112L	ENST00000289316	NM_138720.2	112	Gtg/Ttg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676286	37676286	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	283	480	0	ENST00000447079.4:c.3043del	p.Leu1015TyrfsTer42	p.L1015Yfs*42	ENST00000447079	NM_015083.1	1014	aCc/ac																																																																														
BARD1	580	MSKCC	GRCh37	2	215661819	215661819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	33	261	0	ENST00000260947.4:c.181G>A	p.Val61Met	p.V61M	ENST00000260947	NM_000465.2	61	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0040181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	106	343	0				ENST00000310581	NM_198253.2																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0040181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	151	510	0	ENST00000275493.2:c.2317_2319dupCAC	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829404	72829404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200268844		P-0040181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	38	541	0	ENST00000268489.5:c.7177G>A	p.Ala2393Thr	p.A2393T	ENST00000268489	NM_006885.3	2393	Gcc/Acc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155880449	155880449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0040181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	117	468	0	ENST00000368323.3:c.104G>C	p.Ser35Thr	p.S35T	ENST00000368323	NM_006912.5	35	aGt/aCt																																																																														
BCL2	596	MSKCC	GRCh37	18	60985725	60985725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	25	225	0	ENST00000333681.4:c.175C>G	p.Pro59Ala	p.P59A	ENST00000333681		59	Cca/Gca																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043387	180043387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	85	535	0	ENST00000261937.6:c.3199G>A	p.Asp1067Asn	p.D1067N	ENST00000261937	NM_182925.4	1067	Gac/Aac																																																																														
MGA	23269	MSKCC	GRCh37	15	42035232	42035232	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	59	537	0	ENST00000219905.7:c.5074T>C	p.Ser1692Pro	p.S1692P	ENST00000219905	NM_001164273.1	1692	Tcc/Ccc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349018	89349018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	341	615	1	ENST00000301030.4:c.3932G>A	p.Arg1311Gln	p.R1311Q	ENST00000301030	NM_001256183.1	1311	cGa/cAa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71096091	71096091	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0040181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	126	213	0	ENST00000318789.4:c.664+2T>C		p.X222_splice	ENST00000318789	NM_032682.5	222																																																																															
MET	4233	MSKCC	GRCh37	7	116395564	116395564	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	92	245	0	ENST00000397752.3:c.1857G>C	p.Met619Ile	p.M619I	ENST00000397752	NM_000245.2	619	atG/atC																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0040191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	143	798	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482169	87482169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201028496		P-0040191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	186	930	0	ENST00000277120.3:c.1456G>A	p.Val486Ile	p.V486I	ENST00000277120		486	Gtt/Att																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0040192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	245	832	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20148726	20148726	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	156	433	0	ENST00000379607.5:c.338-1G>A		p.X113_splice	ENST00000379607	NM_001412.3	113																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	214	485	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	180	779	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839736	27839745	+	frameshift_variant	Frame_Shift_Del	DEL	TAGTGACGCG	TAGTGACGCG	CAC			P-0040202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	118	627	0	ENST00000328488.2:c.349_358delinsGTG	p.Arg117ValfsTer?	p.R117Vfs*?	ENST00000328488	NM_003533.2	117	CGCGTCACTAtt/GTGtt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	977	729	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789661	3789661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	537	750	0	ENST00000262367.5:c.4198G>C	p.Glu1400Gln	p.E1400Q	ENST00000262367	NM_004380.2	1400	Gag/Cag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438535	52438535	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	623	773	0	ENST00000460680.1:c.1184C>G	p.Ser395Ter	p.S395*	ENST00000460680	NM_004656.3	395	tCa/tGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273878	10273878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	107	884	4	ENST00000330684.3:c.391G>A	p.Ala131Thr	p.A131T	ENST00000330684	NM_001134407.1	131	Gca/Aca																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437315	52437315	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	474	787	0	ENST00000460680.1:c.1730-1G>C		p.X577_splice	ENST00000460680	NM_004656.3	577																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427900	49427900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	631	876	0	ENST00000301067.7:c.10690C>G	p.Leu3564Val	p.L3564V	ENST00000301067	NM_003482.3	3564	Ctc/Gtc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32936802	32936802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	239	500	0	ENST00000380152.3:c.7948G>A	p.Glu2650Lys	p.E2650K	ENST00000380152		2650	Gaa/Aaa																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216786	7216786	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	381	619	0	ENST00000380728.2:c.637C>T	p.Pro213Ser	p.P213S	ENST00000380728		213	Cct/Tct																																																																														
CASP8	841	MSKCC	GRCh37	2	202137650	202137650	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	232	469	0	ENST00000358485.4:c.757G>C	p.Asp253His	p.D253H	ENST00000358485	NM_001080125.1	253	Gat/Cat																																																																														
BARD1	580	MSKCC	GRCh37	2	215610510	215610511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	263	611	0	ENST00000260947.4:c.1745dup	p.Lys583GlufsTer5	p.K583Efs*5	ENST00000260947	NM_000465.2	582	cag/caAg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225339015	225339015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	237	628	0	ENST00000264414.4:c.2254G>A	p.Glu752Lys	p.E752K	ENST00000264414	NM_003590.4	752	Gaa/Aaa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225339021	225339021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	237	648	0	ENST00000264414.4:c.2248G>C	p.Glu750Gln	p.E750Q	ENST00000264414	NM_003590.4	750	Gag/Cag																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091126	29091126	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	385	838	0	ENST00000328354.6:c.1364T>G	p.Val455Gly	p.V455G	ENST00000328354	NM_007194.3	455	gTc/gGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41547882	41547882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	400	672	0	ENST00000263253.7:c.2863C>A	p.Pro955Thr	p.P955T	ENST00000263253	NM_001429.3	955	Cca/Aca																																																																														
EP300	2033	MSKCC	GRCh37	22	41565459	41565566	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTGACCTGACTTTTTTTTTCCTCTTCATTTCTCTTCATTTTGTATAGGAGAGTATACATATCTTACCTCGATAGTGTTCATTTCTTCCGTCCTAAATGCTTGAGGAC	TGTGACCTGACTTTTTTTTTCCTCTTCATTTCTCTTCATTTTGTATAGGAGAGTATACATATCTTACCTCGATAGTGTTCATTTCTTCCGTCCTAAATGCTTGAGGAC	-			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	101	215	0	ENST00000263253.7:c.4173-46_4234del		p.X1391_splice	ENST00000263253	NM_001429.3	1391																																																																															
EP300	2033	MSKCC	GRCh37	22	41565509	41565509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	181	387	0	ENST00000263253.7:c.4175G>C	p.Arg1392Thr	p.R1392T	ENST00000263253	NM_001429.3	1392	aGa/aCa																																																																														
ATR	545	MSKCC	GRCh37	3	142234351	142234351	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	171	430	0	ENST00000350721.4:c.4389G>C	p.Lys1463Asn	p.K1463N	ENST00000350721	NM_001184.3	1463	aaG/aaC																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155701	56155701	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	414	531	0	ENST00000399503.3:c.793G>C	p.Glu265Gln	p.E265Q	ENST00000399503	NM_005921.1	265	Gaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	21	266	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	131	316	0	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132500	11132500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	113	634	0	ENST00000344626.4:c.2716C>T	p.Arg906Cys	p.R906C	ENST00000344626	NM_003072.3	906	Cgc/Tgc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844801	156844801	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	418	616	0	ENST00000524377.1:c.1354+1G>T		p.X452_splice	ENST00000524377	NM_002529.3	452																																																																															
PAK7	57144	MSKCC	GRCh37	20	9543537	9543537	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	63	327	0	ENST00000353224.5:c.1616+1G>T		p.X539_splice	ENST00000353224	NM_177990.2	539																																																																															
FH	2271	MSKCC	GRCh37	1	241672078	241672078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	96	245	0	ENST00000366560.3:c.563A>G	p.Asn188Ser	p.N188S	ENST00000366560	NM_000143.3	188	aAt/aGt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932420	36932420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	221	562	0	ENST00000361632.4:c.2049C>A	p.Phe683Leu	p.F683L	ENST00000361632		683	ttC/ttA																																																																														
PGR	5241	MSKCC	GRCh37	11	100998952	100998952	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	200	510	0	ENST00000325455.5:c.850G>T	p.Glu284Ter	p.E284*	ENST00000325455	NM_001202474.3	284	Gag/Tag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112329	115112329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	58	184	0	ENST00000257566.3:c.1411C>A	p.Arg471Ser	p.R471S	ENST00000257566	NM_016569.3	471	Cgc/Agc																																																																														
POLE	5426	MSKCC	GRCh37	12	133201397	133201397	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	103	559	0	ENST00000320574.5:c.6748-1G>T		p.X2250_splice	ENST00000320574	NM_006231.2	2250																																																																															
MGA	23269	MSKCC	GRCh37	15	42057119	42057119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	210	521	1	ENST00000219905.7:c.7780G>A	p.Ala2594Thr	p.A2594T	ENST00000219905	NM_001164273.1	2594	Gcc/Acc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923461	9923462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	79	399	0	ENST00000330684.3:c.1825dup	p.Trp609LeufsTer7	p.W609Lfs*7	ENST00000330684	NM_001134407.1	609	tgg/tTgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29548868	29548868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	59	522	0	ENST00000358273.4:c.1642G>T	p.Ala548Ser	p.A548S	ENST00000358273	NM_001042492.2	548	Gct/Tct																																																																														
NF1	4763	MSKCC	GRCh37	17	29548939	29548940	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	74	282	0	ENST00000358273.4:c.1713_1714delinsTT	p.Trp571_Glu572delinsCysTer	p.W571_E572delinsC*	ENST00000358273	NM_001042492.2	571	tgGGag/tgTTag																																																																														
EP300	2033	MSKCC	GRCh37	22	41536221	41536221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	76	393	0	ENST00000263253.7:c.1838G>C	p.Arg613Pro	p.R613P	ENST00000263253	NM_001429.3	613	cGg/cCg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851557	134851557	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	53	338	0	ENST00000398015.3:c.963C>A	p.Ser321Arg	p.S321R	ENST00000398015	NM_004441.4	321	agC/agA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66468001	66468001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	27	203	0	ENST00000273854.3:c.268G>A	p.Asp90Asn	p.D90N	ENST00000273854	NM_004439.5	90	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681131	117681131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	139	343	1	ENST00000368508.3:c.3489G>T	p.Lys1163Asn	p.K1163N	ENST00000368508	NM_002944.2	1163	aaG/aaT																																																																														
HGF	3082	MSKCC	GRCh37	7	81355239	81355239	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200948659		P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	38	221	2	ENST00000222390.5:c.1135C>A	p.Gln379Lys	p.Q379K	ENST00000222390	NM_000601.4	379	Caa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500864	8500864	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	63	388	0	ENST00000356435.5:c.2018T>A	p.Leu673His	p.L673H	ENST00000356435		673	cTt/cAt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038749	47038749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	107	686	0	ENST00000329236.7:c.525G>T	p.Arg175Ser	p.R175S	ENST00000329236	NM_001204466.1	175	agG/agT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411773	63411773	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	158	669	1	ENST00000330258.3:c.1394C>G	p.Pro465Arg	p.P465R	ENST00000330258	NM_152424.3	465	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	27	572	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	43	622	0	ENST00000269305.4:c.328C>T	p.Arg110Cys	p.R110C	ENST00000269305	NM_001126112.2	110	Cgt/Tgt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923059	39923059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014896-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	31	358	1	ENST00000378444.4:c.3649C>T	p.Arg1217Ter	p.R1217*	ENST00000378444	NM_001123385.1	1217	Cga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	86	644	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	104	847	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	225	926	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	82	716	6	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	161	828	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	170	1054	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	149	712	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	57	485	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	38	700	0	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	137	665	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	82	795	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	116	771	7	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
CASP8	841	MSKCC	GRCh37	2	202149596	202149596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	38	626	0	ENST00000358485.4:c.1037G>A	p.Cys346Tyr	p.C346Y	ENST00000358485	NM_001080125.1	346	tGc/tAc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056053	26056067	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGGCTTAGCGG	CCTTGGGCTTAGCGG	-	rs756916945		P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	87	531	0	ENST00000343677.2:c.590_604del	p.Ala197_Lys201del	p.A197_K201del	ENST00000343677	NM_005319.3	197	gCCGCTAAGCCCAAGGtt/gtt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	132	796	0	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843724	156843724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	188	1134	2	ENST00000524377.1:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000524377	NM_002529.3	384	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132465	11132465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	137	965	1	ENST00000344626.4:c.2681C>T	p.Thr894Met	p.T894M	ENST00000344626	NM_003072.3	894	aCg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1272311	1272311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141425941		P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	80	807	0	ENST00000310581.5:c.2371G>A	p.Val791Ile	p.V791I	ENST00000310581	NM_198253.2	791	Gtc/Atc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244155	153244156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	112	721	0	ENST00000281708.4:c.2001dup	p.Ser668GlufsTer26	p.S668Efs*26	ENST00000281708	NM_033632.3	667	-/G																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549439	187549439	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	167	754	0	ENST00000441802.2:c.4679del	p.Pro1560ArgfsTer25	p.P1560Rfs*25	ENST00000441802	NM_005245.3	1560	cCg/cg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508461	106508461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	38	496	0	ENST00000359195.3:c.455G>A	p.Arg152Gln	p.R152Q	ENST00000359195	NM_002649.2	152	cGg/cAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033352	48033352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	74	597	0	ENST00000234420.5:c.3656C>T	p.Thr1219Ile	p.T1219I	ENST00000234420	NM_000179.2	1219	aCt/aTt																																																																														
WT1	7490	MSKCC	GRCh37	11	32414263	32414263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	45	688	0	ENST00000332351.3:c.1288C>T	p.Arg430Ter	p.R430*	ENST00000332351	NM_024426.4	430	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260485	16260486	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	90	702	2	ENST00000375759.3:c.7756dupA	p.Thr2586AsnfsTer10	p.T2586Nfs*10	ENST00000375759	NM_015001.2	2584	gaa/gAaa																																																																														
CD79A	973	MSKCC	GRCh37	19	42383183	42383183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	128	989	2	ENST00000221972.3:c.203G>A	p.Arg68His	p.R68H	ENST00000221972	NM_021601.3	68	cGc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524347	187524347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	122	702	1	ENST00000441802.2:c.11333C>T	p.Ala3778Val	p.A3778V	ENST00000441802	NM_005245.3	3778	gCg/gTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288788	15288789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	37	96	0	ENST00000263388.2:c.3950dup	p.Gly1318ArgfsTer245	p.G1318Rfs*245	ENST00000263388	NM_000435.2	1317	cca/ccCa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900661	3900661	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	34	813	0	ENST00000262367.5:c.435delC	p.Ala146LeufsTer6	p.A146Lfs*6	ENST00000262367	NM_004380.2	145	ccC/cc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128420047	128420047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	60	870	3	ENST00000265960.3:c.381del	p.Lys127AsnfsTer20	p.K127Nfs*20	ENST00000265960	NM_001006617.1	127	aaA/aa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058536	69058536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753703		P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	110	849	1	ENST00000288368.4:c.4180C>T	p.Arg1394Trp	p.R1394W	ENST00000288368	NM_024870.2	1394	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211504	36211504	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	78	597	0	ENST00000222270.7:c.1259del	p.Pro420LeufsTer55	p.P420Lfs*55	ENST00000222270	NM_014727.1	419	Ccc/cc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	92	571	0	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	83	1066	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
TEK	7010	MSKCC	GRCh37	9	27158026	27158026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	150	874	0	ENST00000380036.4:c.255del	p.Val86LeufsTer31	p.V86Lfs*31	ENST00000380036	NM_000459.3	84	Aaa/aa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963985	2963985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	130	905	0	ENST00000396946.4:c.1822C>T	p.Arg608Cys	p.R608C	ENST00000396946	NM_032415.4	608	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210725	36210725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	159	978	2	ENST00000222270.7:c.481del	p.Leu161PhefsTer6	p.L161Ffs*6	ENST00000222270	NM_014727.1	159	aCc/ac																																																																														
TET1	80312	MSKCC	GRCh37	10	70446317	70446317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	86	842	1	ENST00000373644.4:c.5257C>T	p.Arg1753Cys	p.R1753C	ENST00000373644	NM_030625.2	1753	Cgt/Tgt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476388	88476388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	117	728	0	ENST00000360948.2:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000360948	NM_001012338.2	582	Cgg/Tgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223375	2223376	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	127	845	0	ENST00000398665.3:c.3492dup	p.Val1165ArgfsTer28	p.V1165Rfs*28	ENST00000398665	NM_032482.2	1162	-/C																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796080	78796080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	130	733	1	ENST00000306801.3:c.970G>A	p.Ala324Thr	p.A324T	ENST00000306801	NM_020761.2	324	Gcg/Acg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743757	46743757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	180	978	0	ENST00000371975.4:c.2047C>T	p.Arg683Cys	p.R683C	ENST00000371975	NM_003579.3	683	Cgt/Tgt																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175957514	175957514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	84	649	0	ENST00000367669.3:c.1882G>T	p.Gly628Trp	p.G628W	ENST00000367669	NM_022457.5	628	Ggg/Tgg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243778465	243778465	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	16	384	0	ENST00000263826.5:c.562-2A>G		p.X188_splice	ENST00000263826	NM_005465.4	188																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246670434	246670434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	165	703	0	ENST00000388985.4:c.86T>C	p.Leu29Pro	p.L29P	ENST00000388985		29	cTa/cCa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154234	2154234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	49	912	0	ENST00000434045.2:c.694G>A	p.Ala232Thr	p.A232T	ENST00000434045	NM_001127598.1	232	Gcc/Acc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71947004	71947005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	159	1074	0	ENST00000298229.2:c.2857dup	p.Arg953ProfsTer16	p.R953Pfs*16	ENST00000298229	NM_001567.3	951	-/C																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123689	46123689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	53	425	0	ENST00000334344.6:c.70C>T	p.Arg24Trp	p.R24W	ENST00000334344	NM_152641.2	24	Cgg/Tgg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245394	46245394	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	44	759	0	ENST00000334344.6:c.3491del	p.Phe1164SerfsTer9	p.F1164Sfs*9	ENST00000334344	NM_152641.2	1163	aTt/at																																																																														
POLE	5426	MSKCC	GRCh37	12	133226079	133226079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	140	987	1	ENST00000320574.5:c.3818G>T	p.Arg1273Leu	p.R1273L	ENST00000320574	NM_006231.2	1273	cGg/cTg																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872488	35872488	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145212029		P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	127	805	1	ENST00000216797.5:c.415C>T	p.Leu139Phe	p.L139F	ENST00000216797	NM_020529.2	139	Ctc/Ttc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99451954	99451954	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	122	629	2	ENST00000268035.6:c.1288C>T	p.Gln430Ter	p.Q430*	ENST00000268035	NM_000875.3	430	Caa/Taa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830763	3830763	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	106	689	1	ENST00000262367.5:c.1793A>G	p.Gln598Arg	p.Q598R	ENST00000262367	NM_004380.2	598	cAg/cGg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1611720	1611720	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149962284		P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	163	922	0	ENST00000344749.5:c.1942G>A	p.Ala648Thr	p.A648T	ENST00000344749	NM_001136139.2	648	Gcc/Acc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10244891	10244891	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	116	858	0	ENST00000340748.4:c.4816+2T>C		p.X1606_splice	ENST00000340748		1606																																																																															
BABAM1	29086	MSKCC	GRCh37	19	17382428	17382428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	129	852	1	ENST00000359435.4:c.308A>G	p.Glu103Gly	p.E103G	ENST00000359435	NM_001033549.1	103	gAg/gGg																																																																														
CD79A	973	MSKCC	GRCh37	19	42381390	42381390	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	112	815	0	ENST00000221972.3:c.16G>T	p.Gly6Ter	p.G6*	ENST00000221972	NM_021601.3	6	Gga/Tga																																																																														
CIC	23152	MSKCC	GRCh37	19	42794868	42794868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143994466		P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	115	963	2	ENST00000575354.2:c.1948G>A	p.Ala650Thr	p.A650T	ENST00000575354	NM_015125.3	650	Gcc/Acc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919055	50919055	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	134	879	0	ENST00000440232.2:c.2792A>G	p.Lys931Arg	p.K931R	ENST00000440232	NM_002691.3	931	aAg/aGg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714579	52714579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	155	924	0	ENST00000322088.6:c.337C>T	p.Arg113Trp	p.R113W	ENST00000322088	NM_014225.5	113	Cgg/Tgg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470922	25470922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	74	868	0	ENST00000264709.3:c.839A>G	p.Asp280Gly	p.D280G	ENST00000264709	NM_175629.2	280	gAc/gGc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225378314	225378314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	70	480	0	ENST00000264414.4:c.581G>A	p.Gly194Asp	p.G194D	ENST00000264414	NM_003590.4	194	gGt/gAt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663330	227663330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	164	715	0	ENST00000305123.5:c.125C>T	p.Ala42Val	p.A42V	ENST00000305123	NM_005544.2	42	gCg/gTg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45651187	45651187	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	76	759	1	ENST00000407780.3:c.838C>T	p.Arg280Ter	p.R280*	ENST00000407780	NM_001283052.1	280	Cga/Tga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71101764	71101764	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	60	325	0	ENST00000318789.4:c.434A>G	p.Glu145Gly	p.E145G	ENST00000318789	NM_032682.5	145	gAg/gGg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259454	89259454	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	45	718	0	ENST00000336596.2:c.602delA	p.Lys201SerfsTer6	p.K201Sfs*6	ENST00000336596	NM_005233.5	200	Aaa/aa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665499	176665499	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	112	608	0	ENST00000439151.2:c.4186del	p.Thr1396ArgfsTer23	p.T1396Rfs*23	ENST00000439151	NM_022455.4	1395	Aaa/aa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031934	26031934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	100	498	0	ENST00000244661.2:c.355A>G	p.Thr119Ala	p.T119A	ENST00000244661	NM_003537.3	119	Act/Gct																																																																														
STK19	8859	MSKCC	GRCh37	6	31940207	31940207	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	181	1103	1	ENST00000375331.2:c.349C>A	p.His117Asn	p.H117N	ENST00000375331	NM_004197.1	117	Cac/Aac																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004668	150004668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	123	809	0	ENST00000253339.5:c.1557G>T	p.Trp519Cys	p.W519C	ENST00000253339		519	tgG/tgT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2969640	2969640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	63	783	0	ENST00000396946.4:c.1639T>C	p.Ser547Pro	p.S547P	ENST00000396946	NM_032415.4	547	Tcc/Ccc																																																																														
HGF	3082	MSKCC	GRCh37	7	81358972	81358972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	37	777	1	ENST00000222390.5:c.989A>G	p.Asp330Gly	p.D330G	ENST00000222390	NM_000601.4	330	gAt/gGt																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38162224	38162224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	105	686	0	ENST00000317025.8:c.2492C>T	p.Ala831Val	p.A831V	ENST00000317025	NM_023034.1	831	gCt/gTt																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38187218	38187218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	190	958	2	ENST00000317025.8:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000317025	NM_023034.1	420	cGa/cAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27228303	27228303	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	42	583	0	ENST00000380036.4:c.3300G>T	p.Lys1100Asn	p.K1100N	ENST00000380036	NM_000459.3	1100	aaG/aaT																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966706	36966706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	102	623	0	ENST00000358127.4:c.620C>T	p.Pro207Leu	p.P207L	ENST00000358127	NM_001280556.1	207	cCg/cTg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430649	80430649	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	59	534	0	ENST00000286548.4:c.359A>G	p.Lys120Arg	p.K120R	ENST00000286548	NM_002072.3	120	aAg/aGg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399780	139399780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	89	865	0	ENST00000277541.6:c.4568G>A	p.Arg1523His	p.R1523H	ENST00000277541	NM_017617.3	1523	cGt/cAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923666	39923666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	74	941	0	ENST00000378444.4:c.3425G>A	p.Ser1142Asn	p.S1142N	ENST00000378444	NM_001123385.1	1142	aGc/aAc																																																																														
AR	367	MSKCC	GRCh37	X	66765427	66765427	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	50	924	0	ENST00000374690.3:c.439C>T	p.Gln147Ter	p.Q147*	ENST00000374690	NM_000044.3	147	Cag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66766583	66766583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	70	870	0	ENST00000374690.3:c.1595C>T	p.Ser532Phe	p.S532F	ENST00000374690	NM_000044.3	532	tCc/tTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70341473	70341473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	156	968	2	ENST00000374080.3:c.908G>A	p.Arg303Gln	p.R303Q	ENST00000374080		303	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101412	27101418	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGGCC	CAAGGCC	-			P-0038558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	220	463	0	ENST00000324856.7:c.4695_4701del	p.Arg1566LeufsTer44	p.R1566Lfs*44	ENST00000324856	NM_006015.4	1565	aCAAGGCCc/ac																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100211	30100211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	78	367	0	ENST00000331968.5:c.1409A>C	p.Glu470Ala	p.E470A	ENST00000331968	NM_002742.2	470	gAa/gCa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098037	178098037	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	85	333	0	ENST00000397062.3:c.343T>A	p.Tyr115Asn	p.Y115N	ENST00000397062	NM_006164.4	115	Tac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	163	652	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	52	262	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	65	192	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324496	31324496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	11	321	0	ENST00000412585.2:c.312C>A	p.Asn104Lys	p.N104K	ENST00000412585	NM_005514.6	104	aaC/aaA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857645	9857645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	75	363	1	ENST00000330684.3:c.3756G>T	p.Gln1252His	p.Q1252H	ENST00000330684	NM_001134407.1	1252	caG/caT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72994041	72994041	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	128	521	0	ENST00000268489.5:c.4G>T	p.Glu2Ter	p.E2*	ENST00000268489	NM_006885.3	2	Gaa/Taa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93953170	93953170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	46	313	0	ENST00000369303.4:c.2971T>A	p.Leu991Ile	p.L991I	ENST00000369303	NM_004440.3	991	Tta/Ata																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	189	462	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	200	492	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425221	49425221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	37	617	0	ENST00000301067.7:c.13267C>A	p.Pro4423Thr	p.P4423T	ENST00000301067	NM_003482.3	4423	Cca/Aca																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663360	227663360	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	158	388	0	ENST00000305123.5:c.95T>A	p.Leu32Gln	p.L32Q	ENST00000305123	NM_005544.2	32	cTg/cAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	96	344	0	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193104712	193104712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	81	309	0	ENST00000367435.3:c.416G>A	p.Arg139Gln	p.R139Q	ENST00000367435	NM_024529.4	139	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	112	512	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	166	623	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
APC	324	MSKCC	GRCh37	5	112177049	112177049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	74	423	0	ENST00000257430.4:c.5758C>T	p.Arg1920Ter	p.R1920*	ENST00000257430	NM_000038.5	1920	Cga/Tga																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	49	363	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916248	9916248	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	94	385	0	ENST00000330684.3:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000330684	NM_001134407.1	681	Cga/Tga																																																																														
AR	367	MSKCC	GRCh37	X	66942700	66942700	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200801099		P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	127	456	0	ENST00000374690.3:c.2481C>A	p.Phe827Leu	p.F827L	ENST00000374690	NM_000044.3	827	ttC/ttA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	147	730	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720744	89720744	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	10	223	1	ENST00000371953.3:c.895G>T	p.Glu299Ter	p.E299*	ENST00000371953	NM_000314.4	299	Gaa/Taa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81941311	81941311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	209	615	1	ENST00000359376.3:c.1489G>A	p.Ala497Thr	p.A497T	ENST00000359376	NM_002661.3	497	Gcc/Acc																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	125	524	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650710	67650710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	263	618	1	ENST00000264010.4:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000264010	NM_006565.3	339	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	276	844	0	ENST00000269305.4:c.833C>A	p.Pro278His	p.P278H	ENST00000269305	NM_001126112.2	278	cCt/cAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48955481	48955481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	95	384	0	ENST00000267163.4:c.1597G>A	p.Glu533Lys	p.E533K	ENST00000267163	NM_000321.2	533	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942751	44942751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	115	524	1	ENST00000377967.4:c.3331C>T	p.Arg1111Cys	p.R1111C	ENST00000377967	NM_021140.2	1111	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952049	178952049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	84	395	0	ENST00000263967.3:c.3104C>T	p.Ala1035Val	p.A1035V	ENST00000263967	NM_006218.2	1035	gCt/gTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81973613	81973613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	172	611	0	ENST00000359376.3:c.3430G>A	p.Asp1144Asn	p.D1144N	ENST00000359376	NM_002661.3	1144	Gat/Aat																																																																														
EZH2	2146	MSKCC	GRCh37	7	148504761	148504761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	154	550	0	ENST00000320356.2:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000320356	NM_004456.4	745	Gaa/Aaa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858253	59858253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	127	500	0	ENST00000259008.2:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000259008	NM_032043.2	581	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944523	40944523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	159	529	0	ENST00000373198.4:c.1979C>A	p.Ser660Tyr	p.S660Y	ENST00000373198	NM_133170.3	660	tCt/tAt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	152	606	0	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788637	3788637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	166	499	0	ENST00000262367.5:c.4317C>A	p.Phe1439Leu	p.F1439L	ENST00000262367	NM_004380.2	1439	ttC/ttA																																																																														
HGF	3082	MSKCC	GRCh37	7	81381567	81381567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	65	251	2	ENST00000222390.5:c.494C>T	p.Ser165Leu	p.S165L	ENST00000222390	NM_000601.4	165	tCg/tTg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58701094	58701094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	151	529	0	ENST00000305921.3:c.685G>A	p.Glu229Lys	p.E229K	ENST00000305921	NM_003620.3	229	Gaa/Aaa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57480443	57480443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	94	274	0	ENST00000371085.3:c.438C>A	p.Phe146Leu	p.F146L	ENST00000371085	NM_000516.4	146	ttC/ttA																																																																														
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	131	625	0	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344954	118344955	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	87	263	0	ENST00000534358.1:c.3086dup	p.Ala1030GlyfsTer9	p.A1030Gfs*9	ENST00000534358	NM_005933.3	1027	cta/ctAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1255456	1255456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	197	683	2	ENST00000310581.5:c.3103G>A	p.Val1035Ile	p.V1035I	ENST00000310581	NM_198253.2	1035	Gtc/Atc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433059	49433059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	82	855	0	ENST00000301067.7:c.8312G>A	p.Arg2771Gln	p.R2771Q	ENST00000301067	NM_003482.3	2771	cGa/cAa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273218	115273218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	155	571	0	ENST00000438362.2:c.1240C>T	p.Arg414Cys	p.R414C	ENST00000438362	NM_001242891.1	414	Cgt/Tgt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750453	57750453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	93	457	0	ENST00000274289.3:c.2015G>A	p.Arg672Gln	p.R672Q	ENST00000274289	NM_006622.3	672	cGa/cAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673712	176673712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	100	348	0	ENST00000439151.2:c.4412G>A	p.Arg1471Gln	p.R1471Q	ENST00000439151	NM_022455.4	1471	cGa/cAa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646257	23646257	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142103232		P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	196	630	0	ENST00000261584.4:c.1610C>T	p.Ser537Leu	p.S537L	ENST00000261584	NM_024675.3	537	tCg/tTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710875	117710875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140178288		P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	126	415	0	ENST00000368508.3:c.1397G>A	p.Arg466Gln	p.R466Q	ENST00000368508	NM_002944.2	466	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416411	49416411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	179	563	1	ENST00000301067.7:c.16300G>A	p.Glu5434Lys	p.E5434K	ENST00000301067	NM_003482.3	5434	Gag/Aag																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115266560	115266560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	157	598	0	ENST00000438362.2:c.1955G>T	p.Arg652Met	p.R652M	ENST00000438362	NM_001242891.1	652	aGg/aTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70451374	70451374	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	161	596	0	ENST00000373644.4:c.6214G>T	p.Glu2072Ter	p.E2072*	ENST00000373644	NM_030625.2	2072	Gaa/Taa																																																																														
PGR	5241	MSKCC	GRCh37	11	100922191	100922191	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	109	458	0	ENST00000325455.5:c.2321A>C	p.Gln774Pro	p.Q774P	ENST00000325455	NM_001202474.3	774	cAg/cCg																																																																														
ATM	472	MSKCC	GRCh37	11	108151837	108151837	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	119	453	0	ENST00000278616.4:c.3518T>G	p.Leu1173Trp	p.L1173W	ENST00000278616	NM_000051.3	1173	tTg/tGg																																																																														
ATM	472	MSKCC	GRCh37	11	108173699	108173699	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	80	413	0	ENST00000278616.4:c.5439T>A	p.Phe1813Leu	p.F1813L	ENST00000278616	NM_000051.3	1813	ttT/ttA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552608	18552608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	64	392	0	ENST00000266497.5:c.2019G>T	p.Lys673Asn	p.K673N	ENST00000266497		673	aaG/aaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914550	32914550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	119	616	0	ENST00000380152.3:c.6058G>A	p.Glu2020Lys	p.E2020K	ENST00000380152		2020	Gaa/Aaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422106	81422106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	138	549	0	ENST00000298171.2:c.82C>T	p.Pro28Ser	p.P28S	ENST00000298171	NM_000369.2	28	Ccc/Tcc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58700895	58700895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	79	519	0	ENST00000305921.3:c.486G>T	p.Lys162Asn	p.K162N	ENST00000305921	NM_003620.3	162	aaG/aaT																																																																														
ALK	238	MSKCC	GRCh37	2	29940449	29940449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	75	334	0	ENST00000389048.3:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000389048	NM_004304.4	261	cGa/cAa																																																																														
CASP8	841	MSKCC	GRCh37	2	202131400	202131400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	101	537	0	ENST00000358485.4:c.368A>G	p.Glu123Gly	p.E123G	ENST00000358485	NM_001080125.1	123	gAg/gGg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37059087	37059087	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	100	354	0	ENST00000231790.2:c.881T>C	p.Leu294Pro	p.L294P	ENST00000231790	NM_000249.3	294	cTc/cCc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612035	189612035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	48	553	3	ENST00000264731.3:c.1787C>T	p.Ala596Val	p.A596V	ENST00000264731	NM_003722.4	596	gCg/gTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467571	66467571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	94	377	0	ENST00000273854.3:c.698G>A	p.Cys233Tyr	p.C233Y	ENST00000273854	NM_004439.5	233	tGc/tAc																																																																														
APC	324	MSKCC	GRCh37	5	112173909	112173909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	102	395	0	ENST00000257430.4:c.2618C>A	p.Ser873Tyr	p.S873Y	ENST00000257430	NM_000038.5	873	tCt/tAt																																																																														
IRF4	3662	MSKCC	GRCh37	6	401586	401586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	163	589	0	ENST00000380956.4:c.908A>G	p.Asn303Ser	p.N303S	ENST00000380956	NM_001195286.1	303	aAc/aGc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658374	117658374	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	143	700	0	ENST00000368508.3:c.5209G>T	p.Glu1737Ter	p.E1737*	ENST00000368508	NM_002944.2	1737	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151876917	151876917	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	61	241	0	ENST00000262189.6:c.7442+2T>C		p.X2481_splice	ENST00000262189	NM_170606.2	2481																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151945335	151945335	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	49	207	0	ENST00000262189.6:c.2184A>C	p.Glu728Asp	p.E728D	ENST00000262189	NM_170606.2	728	gaA/gaC																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005885	69005885	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	124	513	0	ENST00000288368.4:c.2296G>T	p.Glu766Ter	p.E766*	ENST00000288368	NM_024870.2	766	Gaa/Taa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964333	70964333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	81	294	0	ENST00000276594.2:c.1695G>T	p.Met565Ile	p.M565I	ENST00000276594	NM_024504.3	565	atG/atT																																																																														
BTK	695	MSKCC	GRCh37	X	100612553	100612553	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	104	391	0	ENST00000308731.7:c.1121A>C	p.Lys374Thr	p.K374T	ENST00000308731	NM_000061.2	374	aAa/aCa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923029	44923029	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	48	397	0	ENST00000377967.4:c.1890del	p.Glu630AspfsTer61	p.E630Dfs*61	ENST00000377967	NM_021140.2	630	gaG/ga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918342	44918343	+	frameshift_variant	Frame_Shift_Ins	INS	TC	TC	CCA			P-0039882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	16	239	0	ENST00000377967.4:c.967_968delinsCCA	p.Ser323ProfsTer41	p.S323Pfs*41	ENST00000377967	NM_021140.2	323	TCa/CCAa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944516	71944516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	53	524	3	ENST00000298229.2:c.2072G>A	p.Arg691Gln	p.R691Q	ENST00000298229	NM_001567.3	691	cGg/cAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11227530	11227530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	40	452	0	ENST00000361445.4:c.4298T>C	p.Leu1433Ser	p.L1433S	ENST00000361445	NM_004958.3	1433	tTa/tCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578404	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGGGGGCA	GGTGGGGGCA	-			P-0039993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	88	507	0	ENST00000269305.4:c.526_535del	p.Cys176MetfsTer68	p.C176Mfs*68	ENST00000269305	NM_001126112.2	176	TGCCCCCACCat/at																																																																														
EZH1	2145	MSKCC	GRCh37	17	40870050	40870050	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	56	380	0	ENST00000428826.2:c.967A>C	p.Asn323His	p.N323H	ENST00000428826		323	Aat/Cat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	99	420	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	111	647	1	ENST00000269305.4:c.572_574del	p.Pro191del	p.P191del	ENST00000269305	NM_001126112.2	191	cCTCag/cag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	29	503	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	221	784	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121791	2121792	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	125	794	0	ENST00000219476.3:c.1959_1960delAG	p.Gly654LeufsTer2	p.G654Lfs*2	ENST00000219476	NM_000548.3	651	ccAGag/ccag																																																																														
RAD52	5893	MSKCC	GRCh37	12	1023246	1023246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184776294		P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	134	546	2	ENST00000358495.3:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000358495	NM_134424.2	337	Gat/Aat																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	82	539	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372022	55372022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	82	318	1	ENST00000297316.4:c.712G>A	p.Ala238Thr	p.A238T	ENST00000297316	NM_022454.3	238	Gcc/Acc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956964	2956964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	107	669	0	ENST00000396946.4:c.2663G>A	p.Arg888His	p.R888H	ENST00000396946	NM_032415.4	888	cGt/cAt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	24	192	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	219	728	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332273	70332273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	60	429	1	ENST00000373644.4:c.184del	p.Thr62GlnfsTer13	p.T62Qfs*13	ENST00000373644	NM_030625.2	60	Aaa/aa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	103	497	8	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	40	538	11	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	67	413	4	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																														
INHA	3623	MSKCC	GRCh37	2	220437288	220437288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	70	908	1	ENST00000243786.2:c.197del	p.Gly66AlafsTer61	p.G66Afs*61	ENST00000243786	NM_002191.3	64	ctG/ct																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2220125	2220125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	145	729	1	ENST00000398665.3:c.2710G>A	p.Val904Met	p.V904M	ENST00000398665	NM_032482.2	904	Gtg/Atg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682810	190682810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	54	393	1	ENST00000441310.2:c.492delA	p.Lys164AsnfsTer6	p.K164Nfs*6	ENST00000441310	NM_000534.4	162	gcA/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	98	778	1	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
FAT1	2195	MSKCC	GRCh37	4	187558038	187558039	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	26	270	0	ENST00000441802.2:c.3672dupC	p.Lys1225GlnfsTer13	p.K1225Qfs*13	ENST00000441802	NM_005245.3	1224	-/C																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	72	571	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	124	670	2	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	174	892	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	65	675	1	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43733757	43733757	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	79	406	0	ENST00000382044.4:c.3065del	p.Asn1022MetfsTer20	p.N1022Mfs*20	ENST00000382044	NM_001141980.1	1022	aAt/at																																																																														
SYK	6850	MSKCC	GRCh37	9	93606343	93606343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200078199		P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	88	804	1	ENST00000375746.1:c.163G>A	p.Val55Met	p.V55M	ENST00000375746	NM_001174167.1	55	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444378	49444378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	149	828	0	ENST00000301067.7:c.2993del	p.Pro998LeufsTer2	p.P998Lfs*2	ENST00000301067	NM_003482.3	998	cCt/ct																																																																														
SDHA	6389	MSKCC	GRCh37	5	251560	251560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1042170		P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	34	647	0	ENST00000264932.6:c.1771G>A	p.Ala591Thr	p.A591T	ENST00000264932	NM_004168.2	591	Gcg/Acg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821889	72821890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	56	418	0	ENST00000268489.5:c.10285dup	p.Arg3429ProfsTer2	p.R3429Pfs*2	ENST00000268489	NM_006885.3	3429	cgt/cCgt																																																																														
SMO	6608	MSKCC	GRCh37	7	128829270	128829270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	80	630	0	ENST00000249373.3:c.278C>T	p.Ala93Val	p.A93V	ENST00000249373	NM_005631.4	93	gCc/gTc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430206	181430208	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	22	284	0	ENST00000325404.1:c.67_69del	p.Gly23del	p.G23del	ENST00000325404	NM_003106.3	20	GGC/-																																																																														
HGF	3082	MSKCC	GRCh37	7	81350154	81350154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	77	307	0	ENST00000222390.5:c.1178G>A	p.Arg393His	p.R393H	ENST00000222390	NM_000601.4	393	cGt/cAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18446875	18446875	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	22	297	0	ENST00000266497.5:c.964del	p.Cys322AlafsTer13	p.C322Afs*13	ENST00000266497		320	caT/ca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47143010	47143010	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	70	581	0	ENST00000409792.3:c.4953delT	p.Phe1651LeufsTer12	p.F1651Lfs*12	ENST00000409792	NM_014159.6	1651	ttT/tt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629493	187629493	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	24	666	0	ENST00000441802.2:c.1489T>C	p.Tyr497His	p.Y497H	ENST00000441802	NM_005245.3	497	Tac/Cac																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434602	110434602	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	125	512	0	ENST00000375856.3:c.3799del	p.Gln1267SerfsTer64	p.Q1267Sfs*64	ENST00000375856	NM_003749.2	1267	Cag/ag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257918	16257918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143503694		P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	64	621	1	ENST00000375759.3:c.5183C>T	p.Pro1728Leu	p.P1728L	ENST00000375759	NM_015001.2	1728	cCg/cTg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78422298	78422298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	43	399	0	ENST00000370768.2:c.1664C>T	p.Ala555Val	p.A555V	ENST00000370768	NM_003902.3	555	gCc/gTc																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166248	118166248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	53	394	0	ENST00000369448.3:c.758G>A	p.Arg253Gln	p.R253Q	ENST00000369448	NM_017709.3	253	cGg/cAg																																																																														
HIST2H3D	653604	MSKCC	GRCh37	1	149784855	149784855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	49	275	0	ENST00000331491.1:c.382G>A	p.Ala128Thr	p.A128T	ENST00000331491	NM_001123375.2	128	Gcc/Acc																																																																														
RET	5979	MSKCC	GRCh37	10	43596003	43596003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	118	732	1	ENST00000355710.3:c.170G>A	p.Arg57Gln	p.R57Q	ENST00000355710	NM_020975.4	57	cGg/cAg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88651931	88651931	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	51	486	0	ENST00000372037.3:c.280del	p.Thr94ProfsTer3	p.T94Pfs*3	ENST00000372037	NM_004329.2	93	gAa/ga																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88659561	88659561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	25	473	0	ENST00000372037.3:c.344A>G	p.Lys115Arg	p.K115R	ENST00000372037	NM_004329.2	115	aAa/aGa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88659632	88659632	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	89	553	3	ENST00000372037.3:c.419del	p.Pro140LeufsTer4	p.P140Lfs*4	ENST00000372037	NM_004329.2	139	Ccc/cc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127963	64127963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	59	690	0	ENST00000334205.4:c.361G>A	p.Gly121Arg	p.G121R	ENST00000334205	NM_003942.2	121	Ggg/Agg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342634	118342634	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	29	300	0	ENST00000534358.1:c.766delA	p.Ile256LeufsTer18	p.I256Lfs*18	ENST00000534358	NM_005933.3	254	Aaa/aa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	417141	417142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	65	316	0	ENST00000399788.2:c.3408dup	p.Glu1137ArgfsTer3	p.E1137Rfs*3	ENST00000399788	NM_001042603.1	1136	-/A																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859040	57859040	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	149	690	0	ENST00000228682.2:c.534+2T>G		p.X178_splice	ENST00000228682	NM_005269.2	178																																																																															
FLT1	2321	MSKCC	GRCh37	13	28877324	28877324	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	141	520	0	ENST00000282397.4:c.3997T>C	p.Tyr1333His	p.Y1333H	ENST00000282397	NM_002019.4	1333	Tac/Cac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937386	32937386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	55	453	0	ENST00000380152.3:c.8047G>A	p.Ala2683Thr	p.A2683T	ENST00000380152		2683	Gca/Aca																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41239867	41239868	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	66	397	0	ENST00000379561.5:c.482dup	p.Asn162GlnfsTer39	p.N162Qfs*39	ENST00000379561	NM_002015.3	161	ggc/ggGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991898	72991898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	152	662	0	ENST00000268489.5:c.2147G>A	p.Gly716Asp	p.G716D	ENST00000268489	NM_006885.3	716	gGc/gAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29559111	29559111	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	19	159	0	ENST00000358273.4:c.3218T>C	p.Met1073Thr	p.M1073T	ENST00000358273	NM_001042492.2	1073	aTg/aCg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3113410	3113410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	57	711	0	ENST00000078429.4:c.404T>C	p.Leu135Pro	p.L135P	ENST00000078429	NM_002067.2	135	cTg/cCg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216719	36216719	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	105	507	0	ENST00000222270.7:c.3885G>A	p.Trp1295Ter	p.W1295*	ENST00000222270	NM_014727.1	1295	tgG/tgA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228794	36228794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	166	863	2	ENST00000222270.7:c.7693C>T	p.Arg2565Cys	p.R2565C	ENST00000222270	NM_014727.1	2565	Cgt/Tgt																																																																														
ERF	2077	MSKCC	GRCh37	19	42753798	42753799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	94	975	0	ENST00000222329.4:c.465dup	p.Thr156HisfsTer33	p.T156Hfs*33	ENST00000222329	NM_006494.2	155	-/C																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867130	45867130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	34	765	0	ENST00000391945.4:c.989T>C	p.Leu330Pro	p.L330P	ENST00000391945	NM_000400.3	330	cTg/cCg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965811	25965811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	95	725	0	ENST00000435504.4:c.3395G>A	p.Gly1132Asp	p.G1132D	ENST00000435504		1132	gGc/gAc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607816	46607816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	159	851	0	ENST00000263734.3:c.2005C>G	p.Pro669Ala	p.P669A	ENST00000263734	NM_001430.4	669	Ccc/Gcc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99154373	99154373	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	84	629	0	ENST00000074304.5:c.515A>C	p.Gln172Pro	p.Q172P	ENST00000074304	NM_001134224.1	172	cAg/cCg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665419	138665419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	32	621	1	ENST00000330315.3:c.146C>T	p.Pro49Leu	p.P49L	ENST00000330315	NM_023067.3	49	cCg/cTg																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750447	41750447	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	85	587	0	ENST00000226382.2:c.181A>G	p.Thr61Ala	p.T61A	ENST00000226382	NM_003924.3	61	Acg/Gcg																																																																														
TET2	54790	MSKCC	GRCh37	4	106155920	106155920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	96	385	0	ENST00000380013.4:c.821T>C	p.Ile274Thr	p.I274T	ENST00000380013	NM_001127208.2	274	aTc/aCc																																																																														
APC	324	MSKCC	GRCh37	5	112176797	112176797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	40	380	0	ENST00000257430.4:c.5506G>A	p.Gly1836Arg	p.G1836R	ENST00000257430	NM_000038.5	1836	Gga/Aga																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056121	26056121	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	57	479	0	ENST00000343677.2:c.536T>C	p.Val179Ala	p.V179A	ENST00000343677	NM_005319.3	179	gTt/gCt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673628	30673628	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	155	752	0	ENST00000376406.3:c.3332A>G	p.Lys1111Arg	p.K1111R	ENST00000376406	NM_014641.2	1111	aAg/aGg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287857	33287880	+	inframe_deletion	In_Frame_Del	DEL	CCTCCTCCTCTTCAGAATCTGTGG	CCTCCTCCTCTTCAGAATCTGTGG	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	63	713	0	ENST00000374542.5:c.1373_1396del	p.Ala458_Glu465del	p.A458_E465del	ENST00000374542	NM_001141970.1	458	gCCACAGATTCTGAAGAGGAGGAGGat/gat																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129185	152129185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	203	779	0	ENST00000206249.3:c.138C>A	p.Ser46Arg	p.S46R	ENST00000206249	NM_000125.3	46	agC/agA																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729797	41729797	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	98	399	0	ENST00000242208.4:c.732T>G	p.Cys244Trp	p.C244W	ENST00000242208	NM_002192.2	244	tgT/tgG																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508042	106508043	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	26	236	0	ENST00000359195.3:c.41_42del	p.Glu14GlyfsTer147	p.E14Gfs*147	ENST00000359195	NM_002649.2	12	ctGAga/ctga																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864678	68864678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	133	311	0	ENST00000288368.4:c.49C>A	p.Leu17Met	p.L17M	ENST00000288368	NM_024870.2	17	Ctg/Atg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396227	139396227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	60	798	0	ENST00000277541.6:c.5611T>C	p.Cys1871Arg	p.C1871R	ENST00000277541	NM_017617.3	1871	Tgc/Cgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399948	139399948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	171	842	2	ENST00000277541.6:c.4400G>A	p.Cys1467Tyr	p.C1467Y	ENST00000277541	NM_017617.3	1467	tGc/tAc																																																																														
BTK	695	MSKCC	GRCh37	X	100615725	100615725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	35	574	0	ENST00000308731.7:c.607C>T	p.Pro203Ser	p.P203S	ENST00000308731	NM_000061.2	203	Ccg/Tcg																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981720	101981721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	12	247	1	ENST00000282441.5:c.147dupC	p.Ala50ArgfsTer62	p.A50Rfs*62	ENST00000282441	NM_001130145.2	47	-/C																																																																														
REL	5966	MSKCC	GRCh37	2	61118872	61118872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	16	338	0	ENST00000295025.8:c.65G>A	p.Arg22His	p.R22H	ENST00000295025	NM_002908.2	22	cGt/cAt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682771	190682818	+	frameshift_variant	Frame_Shift_Del	DEL	TAAGAATCTACCTGTAAGAAAGCAGTTTTACTCAACTGCAAAAAAATG	TAAGAATCTACCTGTAAGAAAGCAGTTTTACTCAACTGCAAAAAAATG	ATATCATATACCCAGAAACTTA			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	54	418	2	ENST00000441310.2:c.447_494delinsATATCATATACCCAGAAACTTA	p.Phe149LeufsTer9	p.F149Lfs*9	ENST00000441310	NM_000534.4	149	ttTAAGAATCTACCTGTAAGAAAGCAGTTTTACTCAACTGCAAAAAAATGt/ttATATCATATACCCAGAAACTTAt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433492	138433492	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	12	432	1	ENST00000289153.2:c.1120T>C	p.Ser374Pro	p.S374P	ENST00000289153	NM_006219.2	374	Tca/Cca																																																																														
TP63	8626	MSKCC	GRCh37	3	189604272	189604272	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	26	569	0	ENST00000264731.3:c.1439A>G	p.Gln480Arg	p.Q480R	ENST00000264731	NM_003722.4	480	cAg/cGg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592130	67592130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	13	276	1	ENST00000274335.5:c.1946G>A	p.Arg649Gln	p.R649Q	ENST00000274335		649	cGg/cAg																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271348	26271348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	23	573	0	ENST00000305910.3:c.265G>A	p.Ala89Thr	p.A89T	ENST00000305910	NM_003534.2	89	Gcg/Acg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	44	327	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	53	651	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724460	162724460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	46	474	0	ENST00000367921.3:c.232G>A	p.Val78Met	p.V78M	ENST00000367921	NM_006182.2	78	Gtg/Atg																																																																														
NUF2	83540	MSKCC	GRCh37	1	163318853	163318853	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	22	192	0	ENST00000271452.3:c.1243G>T	p.Glu415Ter	p.E415*	ENST00000271452	NM_145697.2	415	Gag/Tag																																																																														
MGA	23269	MSKCC	GRCh37	15	41988511	41988511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	55	405	0	ENST00000219905.7:c.1303A>C	p.Asn435His	p.N435H	ENST00000219905	NM_001164273.1	435	Aac/Cac																																																																														
BARD1	580	MSKCC	GRCh37	2	215645529	215645529	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	66	457	0	ENST00000260947.4:c.1069A>G	p.Ile357Val	p.I357V	ENST00000260947	NM_000465.2	357	Ata/Gta																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026858	6026858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	96	584	0	ENST00000265849.7:c.1538G>T	p.Ser513Ile	p.S513I	ENST00000265849	NM_000535.5	513	aGt/aTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69012040	69012040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	79	319	0	ENST00000288368.4:c.2677A>G	p.Ile893Val	p.I893V	ENST00000288368	NM_024870.2	893	Att/Gtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0040033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	132	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0040033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	269	713	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967263	134967263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	438	662	1	ENST00000398015.3:c.2602C>T	p.Arg868Trp	p.R868W	ENST00000398015	NM_004441.4	868	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	67	227	0	ENST00000324856.7:c.413C>G	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	137	553	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023609	27023609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	103	603	0	ENST00000324856.7:c.715C>G	p.Pro239Ala	p.P239A	ENST00000324856	NM_006015.4	239	Ccg/Gcg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	195	402	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950082	44950082	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	143	193	0	ENST00000377967.4:c.3851C>G	p.Ser1284Ter	p.S1284*	ENST00000377967	NM_021140.2	1284	tCa/tGa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141572621	141572621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	62	640	0	ENST00000220592.5:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000220592	NM_012154.3	150	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	82	441	0				ENST00000310581	NM_198253.2																																																																																
KDM5A	5927	MSKCC	GRCh37	12	464403	464403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	159	367	1	ENST00000399788.2:c.791G>A	p.Arg264Gln	p.R264Q	ENST00000399788	NM_001042603.1	264	cGa/cAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65321250	65321250	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	145	547	0	ENST00000342505.4:c.1590C>G	p.Ile530Met	p.I530M	ENST00000342505	NM_002227.2	530	atC/atG																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40354380	40354380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	204	978	0	ENST00000293328.3:c.2215C>T	p.His739Tyr	p.H739Y	ENST00000293328	NM_012448.3	739	Cac/Tac																																																																														
STAT3	6774	MSKCC	GRCh37	17	40498592	40498592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	80	315	0	ENST00000264657.5:c.268C>T	p.Leu90Phe	p.L90F	ENST00000264657	NM_139276.2	90	Ctt/Ttt																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732491	74732491	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	18	259	0	ENST00000359995.5:c.418A>C	p.Ser140Arg	p.S140R	ENST00000359995	NM_001195427.1	140	Agc/Cgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276858	15276858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	165	659	0	ENST00000263388.2:c.5407C>G	p.Leu1803Val	p.L1803V	ENST00000263388	NM_000435.2	1803	Ctg/Gtg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912435	50912435	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	90	721	0	ENST00000440232.2:c.1949C>G	p.Ser650Ter	p.S650*	ENST00000440232	NM_002691.3	650	tCa/tGa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42852406	42852406	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	189	539	0	ENST00000398585.3:c.680A>G	p.Tyr227Cys	p.Y227C	ENST00000398585	NM_001135099.1	227	tAt/tGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162516	47162528	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGCAGCTCTTC	TTGGCAGCTCTTC	-			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	90	298	0	ENST00000409792.3:c.3598_3610del	p.Glu1200PhefsTer32	p.E1200Ffs*32	ENST00000409792	NM_014159.6	1200	GAAGAGCTGCCAAtt/tt																																																																														
TET2	54790	MSKCC	GRCh37	4	106156201	106156201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	75	280	0	ENST00000380013.4:c.1102G>A	p.Glu368Lys	p.E368K	ENST00000380013	NM_001127208.2	368	Gaa/Aaa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670570	30670570	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	124	499	0	ENST00000376406.3:c.5950C>G	p.Gln1984Glu	p.Q1984E	ENST00000376406	NM_014641.2	1984	Caa/Gaa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324187	31324187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	88	457	0	ENST00000412585.2:c.376G>A	p.Asp126Asn	p.D126N	ENST00000412585	NM_005514.6	126	Gac/Aac																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900261	101900261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	28	355	0	ENST00000374994.4:c.695A>G	p.Lys232Arg	p.K232R	ENST00000374994	NM_004612.2	232	aAg/aGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040905	47040905	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0040184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	274	344	0	ENST00000329236.7:c.1202-1G>A		p.X401_splice	ENST00000329236	NM_001204466.1	401																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	116	512	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0039947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	244	889	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	401	488	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039420	47039420	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	196	333	0	ENST00000329236.7:c.812T>G	p.Ile271Ser	p.I271S	ENST00000329236	NM_001204466.1	271	aTc/aGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	203	654	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115279473	115279473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	44	359	0	ENST00000438362.2:c.544G>T	p.Val182Leu	p.V182L	ENST00000438362	NM_001242891.1	182	Gtg/Ttg																																																																														
BARD1	580	MSKCC	GRCh37	2	215646116	215646116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	56	491	1	ENST00000260947.4:c.482C>T	p.Ala161Val	p.A161V	ENST00000260947	NM_000465.2	161	gCt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018488-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	258	317	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0018488-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	428	618	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018488-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			85	201	210	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857680	9857680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018488-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	104	378	1	ENST00000330684.3:c.3721C>T	p.Arg1241Trp	p.R1241W	ENST00000330684	NM_001134407.1	1241	Cgg/Tgg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024380	31024380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201302084		P-0018488-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	512	624	0	ENST00000375687.4:c.3865C>T	p.Arg1289Trp	p.R1289W	ENST00000375687	NM_015338.5	1289	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022198-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			777	1830	662	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
MET	4233	MSKCC	GRCh37	7	116423407	116423407	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022198-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1813	486	351	0	ENST00000397752.3:c.3682G>C	p.Asp1228His	p.D1228H	ENST00000397752	NM_000245.2	1228	Gac/Cac																																																																														
MGA	23269	MSKCC	GRCh37	15	41988529	41988529	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022198-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			640	117	573	0	ENST00000219905.7:c.1321C>G	p.Leu441Val	p.L441V	ENST00000219905	NM_001164273.1	441	Cta/Gta																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500902	8500902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022198-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			427	96	543	1	ENST00000356435.5:c.1980C>A	p.His660Gln	p.H660Q	ENST00000356435		660	caC/caA																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248067	110248067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022198-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			787	93	561	0	ENST00000374672.4:c.1405G>C	p.Asp469His	p.D469H	ENST00000374672	NM_004235.4	469	Gac/Cac																																																																														
MET	4233	MSKCC	GRCh37	7	116417457	116417457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022198-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	1041	383	0	ENST00000397752.3:c.3274G>A	p.Val1092Ile	p.V1092I	ENST00000397752	NM_000245.2	1092	Gta/Ata																																																																														
ATRX	546	MSKCC	GRCh37	X	76938159	76938159	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022198-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			706	63	629	0	ENST00000373344.5:c.2589A>C	p.Gln863His	p.Q863H	ENST00000373344	NM_000489.3	863	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033318-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			597	363	775	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CIC	23152	MSKCC	GRCh37	19	42790946	42790946	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033318-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			737	281	800	0	ENST00000575354.2:c.91T>A	p.Ser31Thr	p.S31T	ENST00000575354	NM_015125.3	31	Tct/Act																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033534-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			687	240	559	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033534-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			810	367	774	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
CDH1	999	MSKCC	GRCh37	16	68772316	68772316	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0033534-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			43	420	783	0	ENST00000261769.5:c.163+2T>C		p.X55_splice	ENST00000261769	NM_004360.3	55																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114147	115114148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033534-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			415	384	610	0	ENST00000257566.3:c.1069dup	p.Ala357GlyfsTer18	p.A357Gfs*18	ENST00000257566	NM_016569.3	357	gcc/gGcc																																																																														
CBFB	865	MSKCC	GRCh37	16	67100687	67100689	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0033534-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			39	220	445	0	ENST00000412916.2:c.388_390del	p.Glu130del	p.E130del	ENST00000412916		129	GAG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578432	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033534-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			35	420	751	0	ENST00000269305.4:c.498dup	p.Gln167ThrfsTer14	p.Q167Tfs*14	ENST00000269305	NM_001126112.2	166	-/A																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138456650	138456650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033534-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			404	169	390	0	ENST00000289153.2:c.700A>G	p.Ile234Val	p.I234V	ENST00000289153	NM_006219.2	234	Att/Gtt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033534-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			23	354	354	0	ENST00000304494.5:c.100G>C	p.Ala34Pro	p.A34P	ENST00000304494	NM_000077.4	34	Gcg/Ccg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033534-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			23	354	354	0	ENST00000304494.5:c.100G>C	p.Ala34Pro	p.A34P	ENST00000304494	NM_000077.4	34	Gcg/Ccg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	149	328	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	66	652	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255016	16255016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	24	385	0	ENST00000375759.3:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000375759	NM_015001.2	761	Gac/Aac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255058	16255058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	29	403	0	ENST00000375759.3:c.2323G>C	p.Glu775Gln	p.E775Q	ENST00000375759	NM_015001.2	775	Gag/Cag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40467819	40467819	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	35	459	0	ENST00000264657.5:c.2258-1G>A		p.X753_splice	ENST00000264657	NM_139276.2	753																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56152446	56152447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	68	203	0	ENST00000399503.3:c.505dup	p.Thr169AsnfsTer10	p.T169Nfs*10	ENST00000399503	NM_005921.1	168	gaa/gAaa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536224	106536224	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	49	510	0	ENST00000369096.4:c.191A>T	p.Asp64Val	p.D64V	ENST00000369096	NM_001198.3	64	gAc/gTc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922994	44922994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	43	602	0	ENST00000377967.4:c.1855C>T	p.His619Tyr	p.H619Y	ENST00000377967	NM_021140.2	619	Cat/Tat																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603048	48603049	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCGGCTACTGCACAAGCTGCAGCAGCT			P-0036737-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	25	376	0	ENST00000342988.3:c.1351_1378dup	p.Ala460GlyfsTer43	p.A460Gfs*43	ENST00000342988	NM_005359.5	450	cag/caGGCGGCTACTGCACAAGCTGCAGCAGCTg																																																																														
APC	324	MSKCC	GRCh37	5	112175991	112175991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036737-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	30	285	0	ENST00000257430.4:c.4700C>T	p.Ser1567Leu	p.S1567L	ENST00000257430	NM_000038.5	1567	tCa/tTa																																																																														
CIC	23152	MSKCC	GRCh37	19	42796856	42796856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	106	855	0	ENST00000575354.2:c.3314C>T	p.Ser1105Leu	p.S1105L	ENST00000575354	NM_015125.3	1105	tCa/tTa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948665	71948665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	66	742	0	ENST00000298229.2:c.3377T>C	p.Met1126Thr	p.M1126T	ENST00000298229	NM_001567.3	1126	aTg/aCg																																																																														
RET	5979	MSKCC	GRCh37	10	43623605	43623605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	60	415	0	ENST00000355710.3:c.3233C>T	p.Thr1078Met	p.T1078M	ENST00000355710	NM_020975.4	1078	aCg/aTg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56878417	56878417	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs190188561		P-0037494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	52	338	0	ENST00000308159.5:c.2356C>T	p.Arg786Ter	p.R786*	ENST00000308159	NM_014669.4	786	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971304	15971304	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	54	465	0	ENST00000268712.3:c.4645C>G	p.Pro1549Ala	p.P1549A	ENST00000268712	NM_006311.3	1549	Ccc/Gcc																																																																														
STK19	8859	MSKCC	GRCh37	6	31946698	31946698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	51	415	0	ENST00000375331.2:c.586G>A	p.Gly196Arg	p.G196R	ENST00000375331	NM_004197.1	196	Ggg/Agg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279815	46279850	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCA	-			P-0037494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	53	396	1	ENST00000371998.3:c.3756_3791del	p.Gln1265_Gln1276del	p.Q1265_Q1276del	ENST00000371998		1247	atGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAg/atg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100115	157100115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			84	11	34	0	ENST00000346085.5:c.1052G>C	p.Gly351Ala	p.G351A	ENST00000346085	NM_020732.3	351	gGa/gCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	54	265	0				ENST00000310581	NM_198253.2																																																																																
PIK3CG	5294	MSKCC	GRCh37	7	106509186	106509186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	97	632	0	ENST00000359195.3:c.1180C>T	p.Leu394Phe	p.L394F	ENST00000359195	NM_002649.2	394	Ctt/Ttt																																																																														
BCL6	604	MSKCC	GRCh37	3	187447384	187447384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780987785		P-0039548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	215	523	0	ENST00000232014.4:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000232014	NM_001130845.1	270	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	553	821	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	283	716	2	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057924	27057924	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	278	629	0	ENST00000324856.7:c.1636delC	p.Gln546ArgfsTer73	p.Q546Rfs*73	ENST00000324856	NM_006015.4	544	caC/ca																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	73	376	1	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	237	301	10	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	251	247	1	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																																																														
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	244	296	0	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																															
TP63	8626	MSKCC	GRCh37	3	189586502	189586502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	194	402	0	ENST00000264731.3:c.1126C>T	p.Arg376Cys	p.R376C	ENST00000264731	NM_003722.4	376	Cgc/Tgc																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165663	118165663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	182	431	0	ENST00000369448.3:c.173G>A	p.Arg58Gln	p.R58Q	ENST00000369448	NM_017709.3	58	cGg/cAg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971324	13971324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	428	523	1	ENST00000405192.2:c.605C>T	p.Thr202Met	p.T202M	ENST00000405192	NM_001163147.1	202	aCg/aTg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	209	599	1	ENST00000435504.4:c.2333dupC	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	517	711	0	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082313	16082314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	232	749	2	ENST00000281043.3:c.134dupC	p.Glu47GlyfsTer8	p.E47Gfs*8	ENST00000281043	NM_005378.4	43	acc/aCcc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214666	5214666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116660613		P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	303	842	0	ENST00000357368.4:c.4400C>T	p.Pro1467Leu	p.P1467L	ENST00000357368	NM_002850.3	1467	cCg/cTg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	508	740	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	266	797	3	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
PAX5	5079	MSKCC	GRCh37	9	36840564	36840564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	546	813	0	ENST00000358127.4:c.1169G>A	p.Arg390His	p.R390H	ENST00000358127	NM_001280556.1	390	cGt/cAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164465	47164465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	332	342	0	ENST00000409792.3:c.1661G>A	p.Arg554His	p.R554H	ENST00000409792	NM_014159.6	554	cGt/cAt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523271	9523271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	308	603	0	ENST00000353224.5:c.1966C>T	p.Arg656Trp	p.R656W	ENST00000353224	NM_177990.2	656	Cgg/Tgg																																																																														
TP63	8626	MSKCC	GRCh37	3	189612188	189612188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	277	574	0	ENST00000264731.3:c.1940G>A	p.Arg647His	p.R647H	ENST00000264731	NM_003722.4	647	cGc/cAc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131926920	131926920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	93	191	0	ENST00000265335.6:c.1457G>A	p.Arg486His	p.R486H	ENST00000265335		486	cGt/cAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724487	162724487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	261	584	0	ENST00000367921.3:c.259C>A	p.Leu87Met	p.L87M	ENST00000367921	NM_006182.2	87	Ctg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415825	49415827	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCT	CCT	-			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	169	397	0	ENST00000301067.7:c.16520_16521+1del		p.X5507_splice	ENST00000301067	NM_003482.3	5507																																																																															
AXIN1	8312	MSKCC	GRCh37	16	348078	348078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	130	846	0	ENST00000262320.3:c.1428G>T	p.Gln476His	p.Q476H	ENST00000262320	NM_003502.3	476	caG/caT																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879626	37879626	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	607	787	1	ENST00000269571.5:c.2005del	p.Val669TrpfsTer32	p.V669Wfs*32	ENST00000269571		667	ttG/tt																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4090610	4090610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	395	562	1	ENST00000262948.5:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000262948	NM_030662.3	397	Cgc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808323	1808323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	61	903	1	ENST00000260795.2:c.2081C>T	p.Pro694Leu	p.P694L	ENST00000260795		694	cCg/cTg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149437076	149437078	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	640	689	0	ENST00000286301.3:c.2210_2212del	p.Phe737del	p.F737del	ENST00000286301	NM_005211.3	737	tTCTct/tct																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670918	30670918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148600920		P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	53	732	0	ENST00000376406.3:c.5828G>A	p.Arg1943Gln	p.R1943Q	ENST00000376406	NM_014641.2	1943	cGg/cAg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672566	30672566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	59	632	0	ENST00000376406.3:c.4394T>C	p.Val1465Ala	p.V1465A	ENST00000376406	NM_014641.2	1465	gTt/gCt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	119	541	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	105	729	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	79	456	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716051	243716051	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	96	517	0	ENST00000263826.5:c.1143G>C	p.Leu381Phe	p.L381F	ENST00000263826	NM_005465.4	381	ttG/ttC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845243	151845243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	55	684	1	ENST00000262189.6:c.13769G>A	p.Arg4590His	p.R4590H	ENST00000262189	NM_170606.2	4590	cGc/cAc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982329	201982329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	271	1052	0	ENST00000359651.3:c.708G>C	p.Lys236Asn	p.K236N	ENST00000359651		236	aaG/aaC																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992750	68992750	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	34	558	0	ENST00000288368.4:c.1715C>G	p.Ser572Ter	p.S572*	ENST00000288368	NM_024870.2	572	tCa/tGa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075622	8075622	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	66	569	0	ENST00000377482.5:c.58C>G	p.Leu20Val	p.L20V	ENST00000377482	NM_018948.3	20	Cta/Gta																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981791	201981791	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	210	1016	0	ENST00000359651.3:c.502G>T	p.Glu168Ter	p.E168*	ENST00000359651		168	Gag/Tag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983111	201983111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	207	895	0	ENST00000359651.3:c.960G>C	p.Lys320Asn	p.K320N	ENST00000359651		320	aaG/aaC																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14317377	14317377	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	44	482	0	ENST00000256196.4:c.133C>G	p.Pro45Ala	p.P45A	ENST00000256196		45	Cca/Gca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832523	72832523	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	140	626	0	ENST00000268489.5:c.4058C>G	p.Ser1353Cys	p.S1353C	ENST00000268489	NM_006885.3	1353	tCt/tGt																																																																														
EZH1	2145	MSKCC	GRCh37	17	40864387	40864387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	83	964	0	ENST00000428826.2:c.1321C>G	p.Leu441Val	p.L441V	ENST00000428826		441	Ctt/Gtt																																																																														
EZH1	2145	MSKCC	GRCh37	17	40864393	40864393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	82	982	0	ENST00000428826.2:c.1315G>C	p.Glu439Gln	p.E439Q	ENST00000428826		439	Gaa/Caa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250119	39250119	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	49	663	0	ENST00000402219.2:c.1450A>T	p.Ser484Cys	p.S484C	ENST00000402219	NM_005633.3	484	Agc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488724	212488724	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	127	626	0	ENST00000342788.4:c.2125C>G	p.Gln709Glu	p.Q709E	ENST00000342788	NM_005235.2	709	Caa/Gaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385204	41385204	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	68	878	0	ENST00000373198.4:c.757A>T	p.Ser253Cys	p.S253C	ENST00000373198	NM_133170.3	253	Agt/Tgt																																																																														
TET2	54790	MSKCC	GRCh37	4	106156150	106156150	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	58	497	0	ENST00000380013.4:c.1051G>C	p.Glu351Gln	p.E351Q	ENST00000380013	NM_001127208.2	351	Gaa/Caa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005324	150005324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	64	751	0	ENST00000253339.5:c.901C>T	p.Pro301Ser	p.P301S	ENST00000253339		301	Cct/Tct																																																																														
AR	367	MSKCC	GRCh37	X	66765289	66765289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	168	446	0	ENST00000374690.3:c.301C>G	p.Arg101Gly	p.R101G	ENST00000374690	NM_000044.3	101	Cgt/Ggt																																																																														
VHL	7428	MSKCC	GRCh37	3	10191480	10191480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	87	468	0	ENST00000256474.2:c.473T>C	p.Leu158Pro	p.L158P	ENST00000256474	NM_000551.3	158	cTg/cCg																																																																														
SRC	6714	MSKCC	GRCh37	20	36024706	36024706	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	78	720	0	ENST00000358208.4:c.695A>C	p.Tyr232Ser	p.Y232S	ENST00000358208		232	tAc/tCc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52677343	52677343	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	88	489	0	ENST00000394830.3:c.916del	p.Ala306LeufsTer5	p.A306Lfs*5	ENST00000394830	NM_018313.4	306	Gct/ct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151842308	151842308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	81	405	0	ENST00000262189.6:c.14104G>T	p.Ala4702Ser	p.A4702S	ENST00000262189	NM_170606.2	4702	Gcc/Tcc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904897	101904897	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	33	422	0	ENST00000374994.4:c.885C>A	p.Tyr295Ter	p.Y295*	ENST00000374994	NM_004612.2	295	taC/taA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	87	354	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713470	40713470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	44	657	0	ENST00000373198.4:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000373198	NM_133170.3	1349	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790158	40790158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	54	610	0	ENST00000373198.4:c.2573C>T	p.Ser858Phe	p.S858F	ENST00000373198	NM_133170.3	858	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577523	7577523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	40	588	0	ENST00000269305.4:c.758C>T	p.Thr253Ile	p.T253I	ENST00000269305	NM_001126112.2	253	aCc/aTc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610068	81610068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	25	354	0	ENST00000298171.2:c.1666C>T	p.Pro556Ser	p.P556S	ENST00000298171	NM_000369.2	556	Cct/Tct																																																																														
MTOR	2475	MSKCC	GRCh37	1	11316114	11316114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	118	608	0	ENST00000361445.4:c.640C>T	p.Arg214Cys	p.R214C	ENST00000361445	NM_004958.3	214	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	49	466	0				ENST00000310581	NM_198253.2																																																																																
NEGR1	257194	MSKCC	GRCh37	1	72163805	72163805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	36	293	0	ENST00000357731.5:c.553G>A	p.Gly185Arg	p.G185R	ENST00000357731	NM_173808.2	185	Gga/Aga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711893	89711894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAG			P-0040076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	52	357	0	ENST00000371953.3:c.512_515dup	p.Arg173GlufsTer8	p.R173Efs*8	ENST00000371953	NM_000314.4	171	cag/cAGAGag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348822	118348822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	52	300	0	ENST00000534358.1:c.3475C>T	p.Pro1159Ser	p.P1159S	ENST00000534358	NM_005933.3	1159	Ccc/Tcc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523255	9523255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	34	575	1	ENST00000353224.5:c.1982C>T	p.Pro661Leu	p.P661L	ENST00000353224	NM_177990.2	661	cCa/cTa																																																																														
TP63	8626	MSKCC	GRCh37	3	189582180	189582180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	70	399	0	ENST00000264731.3:c.739C>T	p.His247Tyr	p.H247Y	ENST00000264731	NM_003722.4	247	Cat/Tat																																																																														
LATS2	26524	MSKCC	GRCh37	13	21555731	21555732	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	73	685	0	ENST00000382592.4:c.2538dupT	p.Asn847Ter	p.N847*	ENST00000382592	NM_014572.2	846	-/T																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997447	149997449	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0040077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	105	516	0	ENST00000253339.5:c.2830_2832del	p.Leu944del	p.L944del	ENST00000253339		944	TTG/-																																																																														
DIS3	22894	MSKCC	GRCh37	13	73345115	73345115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	60	294	0	ENST00000377767.4:c.1682C>T	p.Ser561Leu	p.S561L	ENST00000377767	NM_014953.3	561	tCa/tTa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607426	46607426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	101	860	0	ENST00000263734.3:c.1615G>C	p.Asp539His	p.D539H	ENST00000263734	NM_001430.4	539	Gac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0040081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	572	602	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	1054	718	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416523	49416710	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTCCATTCGGTGCGCAGCCGCCGGTACTGAGATGACTTGGAGTGCACAAACTGCTTGCTGTAGGGGGTGTTGGTCTCGCCTGTGAAGGTGCTCTGATATGCCTTAGACATGCTGGTGCTGTTCAGGGTATGGGGCCTGGGAGGTGATATAATCCATGACAAGACAGCTCTCCCTCAGACCAAGTACA	CTTCCATTCGGTGCGCAGCCGCCGGTACTGAGATGACTTGGAGTGCACAAACTGCTTGCTGTAGGGGGTGTTGGTCTCGCCTGTGAAGGTGCTCTGATATGCCTTAGACATGCTGGTGCTGTTCAGGGTATGGGGCCTGGGAGGTGATATAATCCATGACAAGACAGCTCTCCCTCAGACCAAGTACA	-			P-0040081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	190	518	0	ENST00000301067.7:c.16053-52_16188del		p.X5351_splice	ENST00000301067	NM_003482.3	5351																																																																															
RB1	5925	MSKCC	GRCh37	13	48952978	48953737	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGTTAGATATGCAGTCAGTTATTGACCAAAAACGTTGTTATGCGGTGCATGATTATATATGAGATTTTTGCTCTTAGTTTGGAAGGAAATAATATGGTGTGTGTTTATATTTCTAAAATTTGGTTATTCTTTCAAATAATGGGAACTAGTTATTTGGCTAAAACTTCTTGCTCATAAGGTCAGTTTGATCTGATTTTTGCCTGTGTCAGTTTTACTAAATTTATGGACAAAGACTGTCCTCTTAATCCTGGACAGCTATCTTGAAAATACATGTCCTAGGTCATGAGAAATGTTATATAAGGTACATAAAGTGCTTAAAATAGTACTGGGCACATAACCTATCTTTAGTATGAATGATATAAACTGAAATGGAGTTAAGGAAATCCAGGTACTGGACCTACCCTCTTGTTAATTTACTTGGGAATGTTAATCACCACTTAATACTTAAGTTGTGAGTTTTAGACAAGCTAGCTTTTGTGTTGTCTTGGCGGCCATATTTGTAAGAAGGGTGAGAAGTATGTTTTAAGAAAAGGCTTTTTAAAAAATTTTAGTAATTGTCAGCTGGGTATAGTGGTACATGCCTATAATCCCAGCCTCTTGGGAGGCCAAAGCAGGAGGATCTCTTGAGCCCAGGAGTGTGAAGGCCAGCCTGGGCAAAACAGTGAGACTCCATCTCAAAAAAAAAAAAAATTTCATAATTGTGATTTTCTAAAATAGCAGGCTCTTATTTTTCTTTTTGTTTGTTTGTAGCGATACAA	ACTGTTAGATATGCAGTCAGTTATTGACCAAAAACGTTGTTATGCGGTGCATGATTATATATGAGATTTTTGCTCTTAGTTTGGAAGGAAATAATATGGTGTGTGTTTATATTTCTAAAATTTGGTTATTCTTTCAAATAATGGGAACTAGTTATTTGGCTAAAACTTCTTGCTCATAAGGTCAGTTTGATCTGATTTTTGCCTGTGTCAGTTTTACTAAATTTATGGACAAAGACTGTCCTCTTAATCCTGGACAGCTATCTTGAAAATACATGTCCTAGGTCATGAGAAATGTTATATAAGGTACATAAAGTGCTTAAAATAGTACTGGGCACATAACCTATCTTTAGTATGAATGATATAAACTGAAATGGAGTTAAGGAAATCCAGGTACTGGACCTACCCTCTTGTTAATTTACTTGGGAATGTTAATCACCACTTAATACTTAAGTTGTGAGTTTTAGACAAGCTAGCTTTTGTGTTGTCTTGGCGGCCATATTTGTAAGAAGGGTGAGAAGTATGTTTTAAGAAAAGGCTTTTTAAAAAATTTTAGTAATTGTCAGCTGGGTATAGTGGTACATGCCTATAATCCCAGCCTCTTGGGAGGCCAAAGCAGGAGGATCTCTTGAGCCCAGGAGTGTGAAGGCCAGCCTGGGCAAAACAGTGAGACTCCATCTCAAAAAAAAAAAAAATTTCATAATTGTGATTTTCTAAAATAGCAGGCTCTTATTTTTCTTTTTGTTTGTTTGTAGCGATACAA	-			P-0040081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	70	0	0	ENST00000267163.4:c.1333-749_1343del		p.X445_splice	ENST00000267163	NM_000321.2	445																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828969	72828979	+	frameshift_variant	Frame_Shift_Del	DEL	CCAACTTACAC	CCAACTTACAC	-			P-0040081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	455	691	0	ENST00000268489.5:c.7602_7612del	p.Gln2534HisfsTer6	p.Q2534Hfs*6	ENST00000268489	NM_006885.3	2534	caGTGTAAGTTGGca/caca																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226309	2226309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	49	625	1	ENST00000326181.6:c.1922G>A	p.Arg641His	p.R641H	ENST00000326181	NM_032271.2	641	cGt/cAt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873634	35873634	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140640452		P-0040082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	30	192	0	ENST00000303115.3:c.590C>T	p.Pro197Leu	p.P197L	ENST00000303115	NM_002185.3	197	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	32	207	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
ERG	2078	MSKCC	GRCh37	21	39795422	39795422	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140580933		P-0040082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	101	585	0	ENST00000288319.7:c.298G>A	p.Val100Ile	p.V100I	ENST00000288319	NM_182918.3	100	Gtt/Att																																																																														
BRCA1	672	MSKCC	GRCh37	17	41267780	41267780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	57	365	0	ENST00000357654.3:c.97G>A	p.Glu33Lys	p.E33K	ENST00000357654	NM_007294.3	33	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7117324	7117324	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	76	594	0	ENST00000302850.5:c.3892T>A	p.Phe1298Ile	p.F1298I	ENST00000302850	NM_000208.2	1298	Ttt/Att																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020725	26020725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	31	166	0	ENST00000357647.3:c.8G>T	p.Arg3Leu	p.R3L	ENST00000357647	NM_003529.2	3	cGc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	108	184	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	384	180	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	65	107	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851754	134851754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56396912		P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	308	196	0	ENST00000398015.3:c.1160C>T	p.Thr387Met	p.T387M	ENST00000398015	NM_004441.4	387	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112174171	112174171	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	155	160	0	ENST00000257430.4:c.2882del	p.Asn961MetfsTer4	p.N961Mfs*4	ENST00000257430	NM_000038.5	960	tcA/tc																																																																														
INHA	3623	MSKCC	GRCh37	2	220439632	220439632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	530	268	0	ENST00000243786.2:c.485C>T	p.Pro162Leu	p.P162L	ENST00000243786	NM_002191.3	162	cCc/cTc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36938287	36938287	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	204	225	0	ENST00000361632.4:c.674T>A	p.Val225Glu	p.V225E	ENST00000361632		225	gTg/gAg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26923213	26923213	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	28	96	0	ENST00000381527.3:c.209T>G	p.Leu70Arg	p.L70R	ENST00000381527	NM_001260.1	70	cTt/cGt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611324	28611324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	213	140	0	ENST00000241453.7:c.1307G>A	p.Arg436Lys	p.R436K	ENST00000241453	NM_004119.2	436	aGa/aAa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457302	67457302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	182	248	0	ENST00000327367.4:c.276G>C	p.Trp92Cys	p.W92C	ENST00000327367	NM_005902.3	92	tgG/tgC																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943340	17943340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	197	205	0	ENST00000458235.1:c.2668A>C	p.Ser890Arg	p.S890R	ENST00000458235	NM_000215.3	890	Agc/Cgc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480328	89480328	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	83	83	0	ENST00000336596.2:c.2165A>T	p.Gln722Leu	p.Q722L	ENST00000336596	NM_005233.5	722	cAg/cTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55955930	55955930	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	111	193	0	ENST00000263923.4:c.3232T>G	p.Phe1078Val	p.F1078V	ENST00000263923	NM_002253.2	1078	Ttt/Gtt																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140879	37140879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	186	202	0	ENST00000373509.5:c.715G>T	p.Asp239Tyr	p.D239Y	ENST00000373509	NM_002648.3	239	Gat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	52	142	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	83	103	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
MAX	4149	MSKCC	GRCh37	14	65544748	65544748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	71	134	0	ENST00000358664.4:c.178C>T	p.Arg60Trp	p.R60W	ENST00000358664	NM_002382.4	60	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108206648	108206648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	39	114	0	ENST00000278616.4:c.8228C>T	p.Thr2743Met	p.T2743M	ENST00000278616	NM_000051.3	2743	aCg/aTg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134652	41134652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	51	125	0	ENST00000379561.5:c.976G>T	p.Gly326Trp	p.G326W	ENST00000379561	NM_002015.3	326	Ggg/Tgg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986878	36986878	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	119	59	0	ENST00000354822.5:c.811G>T	p.Gly271Cys	p.G271C	ENST00000354822	NM_001079668.2	271	Ggc/Tgc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662299	227662299	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	171	181	0	ENST00000305123.5:c.1156G>C	p.Ala386Pro	p.A386P	ENST00000305123	NM_005544.2	386	Gcc/Ccc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264430	46264430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	54	115	0	ENST00000371998.3:c.1477G>A	p.Ala493Thr	p.A493T	ENST00000371998		493	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112163703	112163703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	30	75	0	ENST00000257430.4:c.1626G>T	p.Gln542His	p.Q542H	ENST00000257430	NM_000038.5	542	caG/caT																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056743	180056743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	212	181	0	ENST00000261937.6:c.769G>C	p.Glu257Gln	p.E257Q	ENST00000261937	NM_182925.4	257	Gag/Cag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450310	50450310	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	121	169	0	ENST00000331340.3:c.494A>T	p.Lys165Met	p.K165M	ENST00000331340	NM_006060.4	165	aAg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	183	1004	0	ENST00000269305.4:c.402T>A	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttA																																																																														
PGR	5241	MSKCC	GRCh37	11	100922154	100922154	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0040099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	45	329	0	ENST00000325455.5:c.2357+1G>A		p.X786_splice	ENST00000325455	NM_001202474.3	786																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864717	57864717	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	124	984	0	ENST00000228682.2:c.2194T>C	p.Tyr732His	p.Y732H	ENST00000228682	NM_005269.2	732	Tat/Cat																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660544	227660544	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1801278		P-0040099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	110	686	1	ENST00000305123.5:c.2911G>T	p.Gly971Trp	p.G971W	ENST00000305123	NM_005544.2	971	Ggg/Tgg																																																																														
BTK	695	MSKCC	GRCh37	X	100608279	100608279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	107	810	0	ENST00000308731.7:c.1811G>C	p.Ser604Thr	p.S604T	ENST00000308731	NM_000061.2	604	aGt/aCt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	227	529	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872213	45872213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	236	711	0	ENST00000391945.4:c.221C>T	p.Ser74Leu	p.S74L	ENST00000391945	NM_000400.3	74	tCa/tTa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174420	11174420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	245	645	0	ENST00000361445.4:c.7255G>A	p.Glu2419Lys	p.E2419K	ENST00000361445	NM_004958.3	2419	Gaa/Aaa																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870966	12870966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	116	376	0	ENST00000228872.4:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000228872	NM_004064.3	65	Cag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440372	52440372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	29	573	1	ENST00000460680.1:c.680G>T	p.Arg227Leu	p.R227L	ENST00000460680	NM_004656.3	227	cGc/cTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100661	8100661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	259	877	2	ENST00000346208.3:c.635C>T	p.Ser212Phe	p.S212F	ENST00000346208		212	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	144	352	0				ENST00000310581	NM_198253.2																																																																																
AKT2	208	MSKCC	GRCh37	19	40742005	40742005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	195	701	0	ENST00000392038.2:c.967G>A	p.Glu323Lys	p.E323K	ENST00000392038	NM_001626.4	323	Gag/Aag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041576	47041576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	252	326	1	ENST00000329236.7:c.1567C>T	p.Gln523Ter	p.Q523*	ENST00000329236	NM_001204466.1	523	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089767	27089777	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TCCAAAACAGG	TCCAAAACAGG	-			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	38	552	1	ENST00000324856.7:c.2724_2732+2del		p.X908_splice	ENST00000324856	NM_006015.4	908																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27105610	27105611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	178	504	0	ENST00000324856.7:c.5222dup	p.Arg1742GlufsTer14	p.R1742Efs*14	ENST00000324856	NM_006015.4	1741	cag/cAag																																																																														
ATM	472	MSKCC	GRCh37	11	108160402	108160402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	122	303	0	ENST00000278616.4:c.4310G>A	p.Arg1437Lys	p.R1437K	ENST00000278616	NM_000051.3	1437	aGa/aAa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961753	41961753	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	177	452	0	ENST00000219905.7:c.661C>G	p.Pro221Ala	p.P221A	ENST00000219905	NM_001164273.1	221	Cct/Gct																																																																														
EZH1	2145	MSKCC	GRCh37	17	40860019	40860019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	224	551	0	ENST00000428826.2:c.1617G>A	p.Met539Ile	p.M539I	ENST00000428826		539	atG/atA																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26101057	26101057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	30	558	1	ENST00000435504.4:c.35C>T	p.Thr12Ile	p.T12I	ENST00000435504		12	aCc/aTc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794999	242794999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	298	947	0	ENST00000334409.5:c.210G>A	p.Met70Ile	p.M70I	ENST00000334409	NM_005018.2	70	atG/atA																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30310003	30310003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	166	432	1	ENST00000307677.4:c.19G>A	p.Glu7Lys	p.E7K	ENST00000307677	NM_138578.1	7	Gag/Aag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440393	52440393	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	152	469	0	ENST00000460680.1:c.660-1G>A		p.X220_splice	ENST00000460680	NM_004656.3	220																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157528459	157528459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	206	544	0	ENST00000346085.5:c.6184G>A	p.Glu2062Lys	p.E2062K	ENST00000346085	NM_020732.3	2062	Gag/Aag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771804	135771804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	261	699	0	ENST00000298552.3:c.3313G>A	p.Asp1105Asn	p.D1105N	ENST00000298552	NM_001162426.1	1105	Gat/Aat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922808	44922808	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	196	226	0	ENST00000377967.4:c.1669G>T	p.Gly557Ter	p.G557*	ENST00000377967	NM_021140.2	557	Gga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	199	453	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
NUF2	83540	MSKCC	GRCh37	1	163318754	163318755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	157	364	0	ENST00000271452.3:c.1150dup	p.Arg384LysfsTer6	p.R384Kfs*6	ENST00000271452	NM_145697.2	382	gaa/gAaa																																																																														
PARP1	142	MSKCC	GRCh37	1	226570793	226570793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	230	540	1	ENST00000366794.5:c.1103C>T	p.Thr368Met	p.T368M	ENST00000366794	NM_001618.3	368	aCg/aTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	166	358	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
WT1	7490	MSKCC	GRCh37	11	32417947	32417947	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	254	405	0	ENST00000332351.3:c.1105C>T	p.Arg369Ter	p.R369*	ENST00000332351	NM_024426.4	369	Cga/Tga																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	187	339	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
PGR	5241	MSKCC	GRCh37	11	100999062	100999062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	203	498	0	ENST00000325455.5:c.740C>T	p.Ala247Val	p.A247V	ENST00000325455	NM_001202474.3	247	gCg/gTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118371742	118371742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	30	238	0	ENST00000534358.1:c.6199C>T	p.Arg2067Cys	p.R2067C	ENST00000534358	NM_005933.3	2067	Cgc/Tgc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487211	56487211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	220	506	0	ENST00000267101.3:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000267101	NM_001982.3	453	Cgt/Tgt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	341	777	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
POLE	5426	MSKCC	GRCh37	12	133214688	133214688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	250	531	0	ENST00000320574.5:c.5590A>G	p.Ile1864Val	p.I1864V	ENST00000320574	NM_006231.2	1864	Atc/Gtc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	134	278	0	ENST00000355739.4:c.1537G>A	p.Ala513Thr	p.A513T	ENST00000355739	NM_000123.3	513	Gca/Aca																																																																														
AKT1	207	MSKCC	GRCh37	14	105246478	105246478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	59	683	0	ENST00000349310.3:c.122G>A	p.Arg41Gln	p.R41Q	ENST00000349310	NM_001014432.1	41	cGg/cAg																																																																														
B2M	567	MSKCC	GRCh37	15	45007740	45007740	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	163	326	0	ENST00000558401.1:c.187G>T	p.Gly63Ter	p.G63*	ENST00000558401	NM_004048.2	63	Gga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	185	329	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640313	3640313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	377	885	0	ENST00000294008.3:c.3326G>A	p.Cys1109Tyr	p.C1109Y	ENST00000294008	NM_032444.2	1109	tGc/tAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820581	3820581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	317	643	0	ENST00000262367.5:c.2870C>T	p.Pro957Leu	p.P957L	ENST00000262367	NM_004380.2	957	cCt/cTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821343	72821344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	94	372	0	ENST00000268489.5:c.10831dup	p.His3611ProfsTer55	p.H3611Pfs*55	ENST00000268489	NM_006885.3	3611	cac/cCac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828662	72828662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	326	584	0	ENST00000268489.5:c.7919G>A	p.Arg2640Lys	p.R2640K	ENST00000268489	NM_006885.3	2640	aGa/aAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81925131	81925131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	159	479	1	ENST00000359376.3:c.922G>A	p.Ala308Thr	p.A308T	ENST00000359376	NM_002661.3	308	Gcg/Acg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7982763	7982763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	254	644	1	ENST00000319144.4:c.1022G>A	p.Cys341Tyr	p.C341Y	ENST00000319144	NM_001139.2	341	tGc/tAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29585444	29585444	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	43	465	0	ENST00000358273.4:c.4256T>C	p.Val1419Ala	p.V1419A	ENST00000358273	NM_001042492.2	1419	gTc/gCc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864772	37864772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	213	413	0	ENST00000269571.5:c.424C>A	p.Leu142Ile	p.L142I	ENST00000269571		142	Ctt/Att																																																																														
EZH1	2145	MSKCC	GRCh37	17	40858072	40858072	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	257	575	0	ENST00000428826.2:c.1792A>G	p.Lys598Glu	p.K598E	ENST00000428826		598	Aag/Gag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435162	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	298	660	0	ENST00000407977.2:c.1975_1976delGG	p.Gly659SerfsTer87	p.G659Sfs*87	ENST00000407977		659	GGt/t																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	204	492	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	308	696	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1623979	1623979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	49	607	0	ENST00000344749.5:c.520C>T	p.Arg174Trp	p.R174W	ENST00000344749	NM_001136139.2	174	Cgg/Tgg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4123835	4123835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	135	340	0	ENST00000262948.5:c.38C>T	p.Thr13Ile	p.T13I	ENST00000262948	NM_030662.3	13	aCc/aTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	40	449	1	ENST00000357368.4:c.3072dupC	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222936	5222936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	178	329	0	ENST00000357368.4:c.2867C>T	p.Ala956Val	p.A956V	ENST00000357368	NM_002850.3	956	gCc/gTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10260622	10260622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	218	458	0	ENST00000340748.4:c.2240A>G	p.Tyr747Cys	p.Y747C	ENST00000340748		747	tAt/tGt																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793280	33793280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	83	140	2	ENST00000498907.2:c.41del	p.Pro14ArgfsTer2	p.P14Rfs*2	ENST00000498907	NM_004364.3	14	cCg/cg																																																																														
ALK	238	MSKCC	GRCh37	2	29449864	29449864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	340	892	0	ENST00000389048.3:c.2991G>T	p.Met997Ile	p.M997I	ENST00000389048	NM_004304.4	997	atG/atT																																																																														
ACVR1	90	MSKCC	GRCh37	2	158594993	158594993	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	190	431	0	ENST00000263640.3:c.1354C>T	p.Gln452Ter	p.Q452*	ENST00000263640	NM_001105.4	452	Caa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212587117	212587117	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	141	268	0	ENST00000342788.4:c.883+1G>A		p.X295_splice	ENST00000342788	NM_005235.2	295																																																																															
CUL3	8452	MSKCC	GRCh37	2	225339038	225339038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	200	385	0	ENST00000264414.4:c.2231G>A	p.Arg744His	p.R744H	ENST00000264414	NM_003590.4	744	cGt/cAt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31389156	31389156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	241	526	2	ENST00000328111.2:c.2069G>A	p.Arg690Gln	p.R690Q	ENST00000328111	NM_006892.3	690	cGg/cAg																																																																														
NF2	4771	MSKCC	GRCh37	22	30032801	30032801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	224	366	0	ENST00000338641.4:c.176C>T	p.Thr59Ile	p.T59I	ENST00000338641	NM_000268.3	59	aCc/aTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41523722	41523722	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	240	678	0	ENST00000263253.7:c.1138A>G	p.Thr380Ala	p.T380A	ENST00000263253	NM_001429.3	380	Aca/Gca																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	164	318	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	137	254	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SDHA	6389	MSKCC	GRCh37	5	236708	236708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	89	158	0	ENST00000264932.6:c.1426A>G	p.Arg476Gly	p.R476G	ENST00000264932	NM_004168.2	476	Agg/Ggg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161221	56161221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781300314		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	213	384	0	ENST00000399503.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000399503	NM_005921.1	364	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112170772	112170772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	240	532	1	ENST00000257430.4:c.1868G>A	p.Arg623Gln	p.R623Q	ENST00000257430	NM_000038.5	623	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	149	348	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	142	252	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
RAD50	10111	MSKCC	GRCh37	5	131953842	131953842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	96	342	0	ENST00000265335.6:c.3245A>G	p.Glu1082Gly	p.E1082G	ENST00000265335		1082	gAa/gGa																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271534	26271534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	273	315	0	ENST00000305910.3:c.79C>T	p.Arg27Trp	p.R27W	ENST00000305910	NM_003534.2	27	Cgg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32191658	32191659	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGCAGC			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	230	683	0	ENST00000375023.3:c.42_47dup	p.Leu15_Leu16dup	p.L15_L16dup	ENST00000375023	NM_004557.3	15	cta/ctGCTGCTa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798477	32798477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	649	687	0	ENST00000374899.4:c.1379C>T	p.Ala460Val	p.A460V	ENST00000374899	NM_018833.2	460	gCc/gTc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43749743	43749743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	69	491	0	ENST00000523873.1:c.596C>T	p.Pro199Leu	p.P199L	ENST00000523873		199	cCg/cTg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129310	152129310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	251	548	0	ENST00000206249.3:c.263C>T	p.Ala88Val	p.A88V	ENST00000206249	NM_000125.3	88	gCg/gTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	341	631	1	ENST00000396946.4:c.1663dupC	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729384	41729384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	250	502	0	ENST00000242208.4:c.1145G>A	p.Ser382Asn	p.S382N	ENST00000242208	NM_002192.2	382	aGc/aAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	170	372	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36882057	36882057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	314	708	1	ENST00000358127.4:c.956T>C	p.Val319Ala	p.V319A	ENST00000358127	NM_001280556.1	319	gTc/gCc																																																																														
SYK	6850	MSKCC	GRCh37	9	93607789	93607789	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	159	352	2	ENST00000375746.1:c.496del	p.Met166CysfsTer18	p.M166Cfs*18	ENST00000375746	NM_001174167.1	164	gAa/ga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418253	139418253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	377	759	0	ENST00000277541.6:c.319C>A	p.Leu107Ile	p.L107I	ENST00000277541	NM_017617.3	107	Ctc/Atc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412473	63412473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	278	802	0	ENST00000330258.3:c.694del	p.Gln232LysfsTer50	p.Q232Kfs*50	ENST00000330258	NM_152424.3	232	Caa/aa																																																																														
ATRX	546	MSKCC	GRCh37	X	76763872	76763872	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	264	533	0	ENST00000373344.5:c.7436T>A	p.Met2479Lys	p.M2479K	ENST00000373344	NM_000489.3	2479	aTg/aAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76776354	76776354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0040107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	191	462	1	ENST00000373344.5:c.7112C>T	p.Ala2371Val	p.A2371V	ENST00000373344	NM_000489.3	2371	gCg/gTg																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176132107	176132107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			872	248	406	0	ENST00000367669.3:c.660G>T	p.Gln220His	p.Q220H	ENST00000367669	NM_022457.5	220	caG/caT																																																																														
REL	5966	MSKCC	GRCh37	2	61121637	61121637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	157	341	2	ENST00000295025.8:c.259G>T	p.Gly87Cys	p.G87C	ENST00000295025	NM_002908.2	87	Ggc/Tgc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660531	227660531	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	171	263	0	ENST00000305123.5:c.2924T>C	p.Ile975Thr	p.I975T	ENST00000305123	NM_005544.2	975	aTt/aCt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405633	139405635	+	missense_variant	Missense_Mutation	ONP	AAG	AAG	CTC			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	144	424	0	ENST00000277541.6:c.2556_2558delinsGAG	p.Ser852_Phe853delinsArgSer	p.S852_F853delinsRS	ENST00000277541	NM_017617.3	852	agCTTc/agGAGc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413143	139413143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	213	354	0	ENST00000277541.6:c.999C>G	p.Ser333Arg	p.S333R	ENST00000277541	NM_017617.3	333	agC/agG																																																																														
RET	5979	MSKCC	GRCh37	10	43597822	43597822	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			983	382	643	0	ENST00000355710.3:c.370A>T	p.Lys124Ter	p.K124*	ENST00000355710	NM_020975.4	124	Aag/Tag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719941	18719941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			750	213	474	0	ENST00000266497.5:c.3838C>G	p.Leu1280Val	p.L1280V	ENST00000266497		1280	Cta/Gta																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18762501	18762501	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			752	352	492	0	ENST00000266497.5:c.3997C>G	p.Gln1333Glu	p.Q1333E	ENST00000266497		1333	Cag/Gag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			812	343	465	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549284	21549285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	334	609	0	ENST00000382592.4:c.2991_2992delinsAT	p.Met997_Asp998delinsIleTyr	p.M997_D998delinsIY	ENST00000382592	NM_014572.2	997	atGGac/atATac																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134449	2134449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	174	565	0	ENST00000219476.3:c.4226G>A	p.Arg1409Gln	p.R1409Q	ENST00000219476	NM_000548.3	1409	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000082-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	171	294	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000127-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			168	35	153	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22143076	22143076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000127-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			249	144	222	0	ENST00000215832.6:c.631A>G	p.Ile211Val	p.I211V	ENST00000215832	NM_002745.4	211	Att/Gtt																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165983	118165983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			75	47	446	0	ENST00000369448.3:c.493G>T	p.Val165Leu	p.V165L	ENST00000369448	NM_017709.3	165	Gtg/Ttg																																																																														
RB1	5925	MSKCC	GRCh37	13	49050864	49050864	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	146	175	0	ENST00000267163.4:c.2548C>T	p.Gln850Ter	p.Q850*	ENST00000267163	NM_000321.2	850	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	15	436	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554098	63554098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	35	616	0	ENST00000307078.5:c.641delG	p.Gly214AspfsTer5	p.G214Dfs*5	ENST00000307078	NM_004655.3	214	gGa/ga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0000174-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			716	562	653	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	305	225	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425050	49425050	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	206	383	0	ENST00000301067.7:c.13438T>G	p.Ser4480Ala	p.S4480A	ENST00000301067	NM_003482.3	4480	Tcc/Gcc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473780	67473780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	59	203	0	ENST00000327367.4:c.860G>A	p.Arg287Gln	p.R287Q	ENST00000327367	NM_005902.3	287	cGg/cAg																																																																														
CIC	23152	MSKCC	GRCh37	19	42791346	42791346	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			149	180	279	0	ENST00000575354.2:c.406G>T	p.Gly136Ter	p.G136*	ENST00000575354	NM_015125.3	136	Gga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123202444	123202444	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	391	451	0	ENST00000218089.9:c.2296A>T	p.Arg766Ter	p.R766*	ENST00000218089	NM_001042749.1	766	Aga/Tga																																																																														
CDK8	1024	MSKCC	GRCh37	13	26911720	26911735	+	frameshift_variant	Frame_Shift_Del	DEL	TATGCTTTAAAACAAA	TATGCTTTAAAACAAA	-			P-0000407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	103	263	0	ENST00000381527.3:c.147_162delTGCTTTAAAACAAATA	p.Tyr49Ter	p.Y49*	ENST00000381527	NM_001260.1	49	TATGCTTTAAAACAAAta/ta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000414-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			90	29	147	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152382185	152382185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000414-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	57	385	0	ENST00000206249.3:c.1295C>T	p.Ser432Leu	p.S432L	ENST00000206249	NM_000125.3	432	tCa/tTa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	102	165	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	215	334	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	116	190	0	ENST00000275493.2:c.2497T>A	p.Leu833Met	p.L833M	ENST00000275493	NM_005228.3	833	Ttg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0000550-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			785	46	457	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0000586-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			62	63	410	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
FH	2271	MSKCC	GRCh37	1	241665855	241665855	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000586-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			343	61	485	1	ENST00000366560.3:c.1124C>G	p.Thr375Ser	p.T375S	ENST00000366560	NM_000143.3	375	aCt/aGt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190718717	190718717	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000586-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	304	587	0	ENST00000441310.2:c.875A>G	p.Tyr292Cys	p.Y292C	ENST00000441310	NM_000534.4	292	tAt/tGt																																																																														
TP63	8626	MSKCC	GRCh37	3	189586432	189586432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000586-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	96	217	0	ENST00000264731.3:c.1056G>T	p.Arg352Ser	p.R352S	ENST00000264731	NM_003722.4	352	agG/agT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	223	405	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915589	131915589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	179	135	0	ENST00000265335.6:c.587G>T	p.Arg196Leu	p.R196L	ENST00000265335		196	cGt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			97	153	499	1	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9781596	9781596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	112	389	0	ENST00000377346.4:c.1906C>T	p.Arg636Trp	p.R636W	ENST00000377346	NM_005026.3	636	Cgg/Tgg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162722951	162722951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	128	411	0	ENST00000367921.3:c.149G>A	p.Ser50Asn	p.S50N	ENST00000367921	NM_006182.2	50	aGt/aAt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193107223	193107223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	121	159	0	ENST00000367435.3:c.432G>T	p.Glu144Asp	p.E144D	ENST00000367435	NM_024529.4	144	gaG/gaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566745	212566745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	175	342	0	ENST00000342788.4:c.1436G>T	p.Ser479Ile	p.S479I	ENST00000342788	NM_005235.2	479	aGc/aTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55575633	55575633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	284	463	0	ENST00000288135.5:c.1159G>A	p.Gly387Arg	p.G387R	ENST00000288135	NM_000222.2	387	Gga/Aga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231742	66231742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	120	371	0	ENST00000273854.3:c.1958C>A	p.Pro653Gln	p.P653Q	ENST00000273854	NM_004439.5	653	cCa/cAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521865	157521865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	237	247	1	ENST00000346085.5:c.4137G>A	p.Met1379Ile	p.M1379I	ENST00000346085	NM_020732.3	1379	atG/atA																																																																														
IDH2	3418	MSKCC	GRCh37	15	90633783	90633783	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	198	440	0	ENST00000330062.3:c.301G>C	p.Ala101Pro	p.A101P	ENST00000330062	NM_002168.2	101	Gca/Cca																																																																														
STK11	6794	MSKCC	GRCh37	19	1220622	1220622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	148	438	0	ENST00000326873.7:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000326873	NM_000455.4	214	Cag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597395	10597395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	139	429	0	ENST00000171111.5:c.1808G>T	p.Gly603Val	p.G603V	ENST00000171111	NM_203500.1	603	gGg/gTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40899093	40899093	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	143	566	0	ENST00000373198.4:c.2177C>T	p.Ala726Val	p.A726V	ENST00000373198	NM_133170.3	726	gCa/gTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76778801	76778801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	124	664	0	ENST00000373344.5:c.6778C>A	p.His2260Asn	p.H2260N	ENST00000373344	NM_000489.3	2260	Cac/Aac																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081618	143081618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000909-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			397	61	316	0	ENST00000262992.4:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000262992	NM_001101669.1	486	Ccc/Tcc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032209	26032209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000909-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			130	17	80	0	ENST00000244661.2:c.80G>A	p.Arg27His	p.R27H	ENST00000244661	NM_003537.3	27	cGc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70347191	70347191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001332-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	396	201	1	ENST00000374080.3:c.2855G>A	p.Cys952Tyr	p.C952Y	ENST00000374080		952	tGt/tAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			710	46	440	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8524993	8524993	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			852	99	567	0	ENST00000356435.5:c.611A>T	p.Lys204Ile	p.K204I	ENST00000356435		204	aAa/aTa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15950396	15950396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201721277		P-0001336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	110	437	0	ENST00000268712.3:c.6548G>A	p.Arg2183His	p.R2183H	ENST00000268712	NM_006311.3	2183	cGc/cAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791356	42791356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	170	381	0	ENST00000575354.2:c.416G>A	p.Arg139Gln	p.R139Q	ENST00000575354	NM_015125.3	139	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0001338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	176	273	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0001338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	350	436	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0001338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	244	251	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94201058	94201058	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0001341-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	151	504	0	ENST00000323929.3:c.1019T>C	p.Ile340Thr	p.I340T	ENST00000323929	NM_005591.3	340	aTt/aCt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012157	16012157	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001341-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	338	550	0	ENST00000268712.3:c.2125C>T	p.Gln709Ter	p.Q709*	ENST00000268712	NM_006311.3	709	Cag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76812991	76812991	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001341-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	142	625	1	ENST00000373344.5:c.6630T>G	p.Phe2210Leu	p.F2210L	ENST00000373344	NM_000489.3	2210	ttT/ttG																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001365-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	290	287	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
NF2	4771	MSKCC	GRCh37	22	30054221	30054221	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001365-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	381	446	1	ENST00000338641.4:c.643G>T	p.Glu215Ter	p.E215*	ENST00000338641	NM_000268.3	215	Gag/Tag																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794475	242794475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001365-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	327	355	0	ENST00000334409.5:c.467C>A	p.Pro156His	p.P156H	ENST00000334409	NM_005018.2	156	cCc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434531	49434531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001365-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	206	173	0	ENST00000301067.7:c.7022A>G	p.Gln2341Arg	p.Q2341R	ENST00000301067	NM_003482.3	2341	cAg/cGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748606	40748606	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001365-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	265	393	0	ENST00000373198.4:c.2910C>A	p.Tyr970Ter	p.Y970*	ENST00000373198	NM_133170.3	970	taC/taA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0001368-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	170	250	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001368-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	156	226	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP63	8626	MSKCC	GRCh37	3	189612029	189612029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	22	285	0	ENST00000264731.3:c.1781G>T	p.Arg594Leu	p.R594L	ENST00000264731	NM_003722.4	594	cGa/cTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875096	151875096	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	43	101	0	ENST00000262189.6:c.7443-1G>T		p.X2481_splice	ENST00000262189	NM_170606.2	2481																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118352470	118352470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	30	189	0	ENST00000534358.1:c.3675G>T	p.Lys1225Asn	p.K1225N	ENST00000534358	NM_005933.3	1225	aaG/aaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435931	49435931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	46	586	0	ENST00000301067.7:c.6050C>G	p.Thr2017Ser	p.T2017S	ENST00000301067	NM_003482.3	2017	aCc/aGc																																																																														
MDM2	4193	MSKCC	GRCh37	12	69210676	69210676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			548	39	294	0	ENST00000462284.1:c.259C>A	p.Leu87Ile	p.L87I	ENST00000462284	NM_002392.5	87	Ctt/Att																																																																														
MDM2	4193	MSKCC	GRCh37	12	69222562	69222562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	43	296	0	ENST00000462284.1:c.535G>T	p.Asp179Tyr	p.D179Y	ENST00000462284	NM_002392.5	179	Gat/Tat																																																																														
TSC2	7249	MSKCC	GRCh37	16	2108765	2108765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	73	557	1	ENST00000219476.3:c.866C>T	p.Ala289Val	p.A289V	ENST00000219476	NM_000548.3	289	gCg/gTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70349200	70349200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	63	822	0	ENST00000374080.3:c.3612C>A	p.Asp1204Glu	p.D1204E	ENST00000374080		1204	gaC/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577146	7577147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001372-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	86	467	0	ENST00000269305.4:c.791dup	p.Leu265ThrfsTer7	p.L265Tfs*7	ENST00000269305	NM_001126112.2	264	cta/ctTa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			574	33	274	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45800152	45800152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			570	93	472	0	ENST00000372115.3:c.68G>A	p.Gly23Glu	p.G23E	ENST00000372115	NM_001048171.1	23	gGa/gAa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225360595	225360595	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	98	501	0	ENST00000264414.4:c.1796T>G	p.Met599Arg	p.M599R	ENST00000264414	NM_003590.4	599	aTg/aGg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201686	66201686	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	114	638	0	ENST00000273854.3:c.2816C>G	p.Pro939Arg	p.P939R	ENST00000273854	NM_004439.5	939	cCa/cGa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517807	187517807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	61	299	0	ENST00000441802.2:c.12887G>T	p.Arg4296Leu	p.R4296L	ENST00000441802	NM_005245.3	4296	cGa/cTa																																																																														
HGF	3082	MSKCC	GRCh37	7	81334991	81334991	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	52	383	0	ENST00000222390.5:c.1836C>A	p.Cys612Ter	p.C612*	ENST00000222390	NM_000601.4	612	tgC/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			682	290	479	0	ENST00000256078.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	13	Ggc/Cgc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882287	89882287	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	109	495	0	ENST00000389301.3:c.187G>C	p.Glu63Gln	p.E63Q	ENST00000389301	NM_000135.2	63	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	191	462	0	ENST00000269305.4:c.817C>G	p.Arg273Gly	p.R273G	ENST00000269305	NM_001126112.2	273	Cgt/Ggt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221947	1221947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			515	120	359	0	ENST00000326873.7:c.863-1G>A		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	79	351	0	ENST00000171111.5:c.556G>T	p.Gly186Cys	p.G186C	ENST00000171111	NM_203500.1	186	Ggc/Tgc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349664	70349664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			660	67	499	0	ENST00000374080.3:c.3826G>T	p.Asp1276Tyr	p.D1276Y	ENST00000374080		1276	Gat/Tat																																																																														
ATRX	546	MSKCC	GRCh37	X	76944336	76944336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			806	99	729	0	ENST00000373344.5:c.569C>A	p.Pro190His	p.P190H	ENST00000373344	NM_000489.3	190	cCt/cAt																																																																														
SDHC	6391	MSKCC	GRCh37	1	161284210	161284210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	137	515	0	ENST00000367975.2:c.15G>C	p.Leu5Phe	p.L5F	ENST00000367975	NM_003001.3	5	ttG/ttC																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629517	187629517	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	95	458	0	ENST00000441802.2:c.1465G>T	p.Asp489Tyr	p.D489Y	ENST00000441802	NM_005245.3	489	Gac/Tac																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004345	150004345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	291	676	0	ENST00000253339.5:c.1880G>T	p.Arg627Met	p.R627M	ENST00000253339		627	aGg/aTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81336639	81336639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	336	418	0	ENST00000222390.5:c.1583G>T	p.Trp528Leu	p.W528L	ENST00000222390	NM_000601.4	528	tGg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845814	151845814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	236	458	0	ENST00000262189.6:c.13198C>T	p.Arg4400Trp	p.R4400W	ENST00000262189	NM_170606.2	4400	Cgg/Tgg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285506	38285506	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1146	215	486	0	ENST00000425967.3:c.647A>C	p.Asn216Thr	p.N216T	ENST00000425967	NM_001174067.1	216	aAc/aCc																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015192	37015192	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	87	421	0	ENST00000358127.4:c.213-1G>T		p.X71_splice	ENST00000358127	NM_001280556.1	71																																																																															
FLT1	2321	MSKCC	GRCh37	13	28897059	28897059	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	88	314	0	ENST00000282397.4:c.2821A>G	p.Lys941Glu	p.K941E	ENST00000282397	NM_002019.4	941	Aag/Gag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690565	88690565	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	148	307	0	ENST00000360948.2:c.464+1G>A		p.X155_splice	ENST00000360948	NM_001012338.2	155																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3832771	3832771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	171	331	0	ENST00000262367.5:c.1487C>T	p.Pro496Leu	p.P496L	ENST00000262367	NM_004380.2	496	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29556173	29556173	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	73	162	0	ENST00000358273.4:c.2540T>G	p.Leu847Arg	p.L847R	ENST00000358273	NM_001042492.2	847	cTt/cGt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934037	39934037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	134	522	2	ENST00000378444.4:c.562C>T	p.Arg188Trp	p.R188W	ENST00000378444	NM_001123385.1	188	Cgg/Tgg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223431	53223431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	98	494	0	ENST00000375401.3:c.3928G>T	p.Glu1310Ter	p.E1310*	ENST00000375401	NM_004187.3	1310	Gag/Tag																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80646037	80646037	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	106	245	0	ENST00000286548.4:c.115del	p.Glu39SerfsTer21	p.E39Sfs*21	ENST00000286548	NM_002072.3	39	Gag/ag																																																																														
AXIN1	8312	MSKCC	GRCh37	16	341242	341243	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	120	424	0	ENST00000262320.3:c.2241_2242del	p.Pro748GlyfsTer33	p.P748Gfs*33	ENST00000262320	NM_003502.3	747	gcGCcg/gccg																																																																														
NF1	4763	MSKCC	GRCh37	17	29653027	29653028	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	298	613	0	ENST00000358273.4:c.5026_5027del	p.Ala1676SerfsTer5	p.A1676Sfs*5	ENST00000358273	NM_001042492.2	1675	tcCGca/tcca																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609620	81609621	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0001397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	187	417	0	ENST00000298171.2:c.1218_1219delinsAA	p.Asn406_Pro407delinsLysThr	p.N406_P407delinsKT	ENST00000298171	NM_000369.2	406	aaCCcg/aaAAcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			346	29	228	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023312	27023312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			52	33	30	0	ENST00000324856.7:c.418G>A	p.Ala140Thr	p.A140T	ENST00000324856	NM_006015.4	140	Gcg/Acg																																																																														
ALK	238	MSKCC	GRCh37	2	29443574	29443574	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			350	36	193	0	ENST00000389048.3:c.3643C>A	p.Pro1215Thr	p.P1215T	ENST00000389048	NM_004304.4	1215	Ccg/Acg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422565	225422565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			349	40	189	0	ENST00000264414.4:c.75G>T	p.Met25Ile	p.M25I	ENST00000264414	NM_003590.4	25	atG/atT																																																																														
KDR	3791	MSKCC	GRCh37	4	55973981	55973981	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			492	54	231	0	ENST00000263923.4:c.1335T>A	p.Cys445Ter	p.C445*	ENST00000263923	NM_002253.2	445	tgT/tgA																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459672	149459672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			531	75	318	0	ENST00000286301.3:c.535G>A	p.Ala179Thr	p.A179T	ENST00000286301	NM_005211.3	179	Gcc/Acc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001245	150001245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			710	53	473	0	ENST00000253339.5:c.2359G>C	p.Gly787Arg	p.G787R	ENST00000253339		787	Ggg/Cgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579478	7579478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			328	36	229	0	ENST00000269305.4:c.209C>T	p.Ala70Val	p.A70V	ENST00000269305	NM_001126112.2	70	gCt/gTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29533309	29533309	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			477	62	324	0	ENST00000358273.4:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000358273	NM_001042492.2	438	Gaa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645134	86645134	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001599-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			348	25	282	0	ENST00000274376.6:c.1206T>A	p.Cys402Ter	p.C402*	ENST00000274376	NM_002890.2	402	tgT/tgA																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001632-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			821	444	362	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151893024	151893024	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001632-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	370	482	0	ENST00000262189.6:c.4346C>G	p.Ser1449Ter	p.S1449*	ENST00000262189	NM_170606.2	1449	tCa/tGa																																																																														
CDH1	999	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001632-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	783	488	0	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0001697-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			131	43	306	1	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032055	26032055	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001697-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			129	43	241	0	ENST00000244661.2:c.234C>G	p.Asp78Glu	p.D78E	ENST00000244661	NM_003537.3	78	gaC/gaG																																																																														
BCL6	604	MSKCC	GRCh37	3	187449610	187449610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001697-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			226	38	296	0	ENST00000232014.4:c.270G>T	p.Met90Ile	p.M90I	ENST00000232014	NM_001130845.1	90	atG/atT																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0001724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	90	796	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	201	904	0	ENST00000397062.3:c.241G>A	p.Gly81Ser	p.G81S	ENST00000397062	NM_006164.4	81	Ggt/Agt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628184	187628184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	129	699	0	ENST00000441802.2:c.2798G>T	p.Arg933Leu	p.R933L	ENST00000441802	NM_005245.3	933	cGt/cTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0001724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	100	490	0	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																															
EIF1AX	1964	MSKCC	GRCh37	X	20156717	20156717	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	101	430	2	ENST00000379607.5:c.40A>G	p.Arg14Gly	p.R14G	ENST00000379607	NM_001412.3	14	Agg/Ggg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			820	181	687	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	174	454	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
ATM	472	MSKCC	GRCh37	11	108114679	108114679	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	165	317	0	ENST00000278616.4:c.497-1G>C		p.X166_splice	ENST00000278616	NM_000051.3	166																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49427377	49427377	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			680	69	560	0	ENST00000301067.7:c.11111T>G	p.Leu3704Arg	p.L3704R	ENST00000301067	NM_003482.3	3704	cTt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577107	7577107	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	328	684	2	ENST00000269305.4:c.831T>A	p.Cys277Ter	p.C277*	ENST00000269305	NM_001126112.2	277	tgT/tgA																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256748	19256748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	26	461	0	ENST00000162023.5:c.965G>A	p.Arg322His	p.R322H	ENST00000162023		322	cGc/cAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931634	39931634	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	42	335	0	ENST00000378444.4:c.2965A>C	p.Ser989Arg	p.S989R	ENST00000378444	NM_001123385.1	989	Agt/Cgt																																																																														
ATRX	546	MSKCC	GRCh37	X	76875982	76875982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	276	375	0	ENST00000373344.5:c.5153G>T	p.Cys1718Phe	p.C1718F	ENST00000373344	NM_000489.3	1718	tGt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001846-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	86	142	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525110	187525110	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001846-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	54	101	0	ENST00000441802.2:c.10570C>G	p.Gln3524Glu	p.Q3524E	ENST00000441802	NM_005245.3	3524	Cag/Gag																																																																														
RB1	5925	MSKCC	GRCh37	13	49030367	49030368	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001846-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	120	204	0	ENST00000267163.4:c.1848dupA	p.Gly617ArgfsTer36	p.G617Rfs*36	ENST00000267163	NM_000321.2	614	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	174	341	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	137	318	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29533378	29533378	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	167	188	0	ENST00000358273.4:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000358273	NM_001042492.2	461	Cga/Tga																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551710	150551710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	67	98	0	ENST00000369026.2:c.297C>A	p.Phe99Leu	p.F99L	ENST00000369026	NM_021960.4	99	ttC/ttA																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25471043	25471043	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	170	314	2	ENST00000264709.3:c.718G>T	p.Glu240Ter	p.E240*	ENST00000264709	NM_175629.2	240	Gag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541541	187541541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	51	299	1	ENST00000441802.2:c.6199G>A	p.Val2067Met	p.V2067M	ENST00000441802	NM_005245.3	2067	Gtg/Atg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38952502	38952502	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	80	165	0	ENST00000357387.3:c.2923A>G	p.Ile975Val	p.I975V	ENST00000357387	NM_152756.3	975	Ata/Gta																																																																														
RET	5979	MSKCC	GRCh37	10	43615005	43615005	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	79	275	0	ENST00000355710.3:c.2419G>C	p.Ala807Pro	p.A807P	ENST00000355710	NM_020975.4	807	Gcc/Ccc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008226	29008226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	84	304	0	ENST00000282397.4:c.645G>T	p.Leu215Phe	p.L215F	ENST00000282397	NM_002019.4	215	ttG/ttT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923390	9923390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	59	336	0	ENST00000330684.3:c.1897G>C	p.Val633Leu	p.V633L	ENST00000330684	NM_001134407.1	633	Gta/Cta																																																																														
STK11	6794	MSKCC	GRCh37	19	1220443	1220443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	121	286	0	ENST00000326873.7:c.536C>A	p.Pro179Gln	p.P179Q	ENST00000326873	NM_000455.4	179	cCg/cAg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602871	10602871	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	144	256	0	ENST00000171111.5:c.707A>T	p.Asp236Val	p.D236V	ENST00000171111	NM_203500.1	236	gAc/gTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141495	11141495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	139	291	0	ENST00000344626.4:c.3472G>C	p.Ala1158Pro	p.A1158P	ENST00000344626	NM_003072.3	1158	Gct/Cct																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276713	15276713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	134	302	0	ENST00000263388.2:c.5552G>T	p.Arg1851Leu	p.R1851L	ENST00000263388	NM_000435.2	1851	cGt/cTt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276768	15276768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	145	324	0	ENST00000263388.2:c.5497G>T	p.Ala1833Ser	p.A1833S	ENST00000263388	NM_000435.2	1833	Gca/Tca																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561552	9561552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	24	191	0	ENST00000353224.5:c.230G>T	p.Cys77Phe	p.C77F	ENST00000353224	NM_177990.2	77	tGc/tTc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513232	44513232	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	37	96	0	ENST00000291552.4:c.703G>C	p.Glu235Gln	p.E235Q	ENST00000291552	NM_006758.2	235	Gaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			891	92	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628053	187628053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	99	518	0	ENST00000441802.2:c.2929G>T	p.Asp977Tyr	p.D977Y	ENST00000441802	NM_005245.3	977	Gat/Tat																																																																														
STK11	6794	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	67	314	0	ENST00000326873.7:c.465-1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10597396	10597396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	57	438	0	ENST00000171111.5:c.1807G>T	p.Gly603Trp	p.G603W	ENST00000171111	NM_203500.1	603	Ggg/Tgg																																																																														
AR	367	MSKCC	GRCh37	X	66937319	66937319	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0001944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	65	453	0	ENST00000374690.3:c.2174-1G>C		p.X725_splice	ENST00000374690	NM_000044.3	725																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	112	515	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			908	192	473	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11301680	11301680	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			821	65	473	0	ENST00000361445.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000361445	NM_004958.3	491	Cga/Tga																																																																														
SDHA	6389	MSKCC	GRCh37	5	224526	224526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	79	221	1	ENST00000264932.6:c.202G>T	p.Gly68Cys	p.G68C	ENST00000264932	NM_004168.2	68	Ggc/Tgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030326	180030326	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150279372		P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			753	175	528	1	ENST00000261937.6:c.3958C>T	p.Arg1320Trp	p.R1320W	ENST00000261937	NM_182925.4	1320	Cgg/Tgg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680730	30680730	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			804	67	535	0	ENST00000376406.3:c.989A>G	p.Asp330Gly	p.D330G	ENST00000376406	NM_014641.2	330	gAc/gGc																																																																														
SYK	6850	MSKCC	GRCh37	9	93636564	93636564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	66	343	0	ENST00000375746.1:c.994G>T	p.Ala332Ser	p.A332S	ENST00000375746	NM_001174167.1	332	Gca/Tca																																																																														
RET	5979	MSKCC	GRCh37	10	43620407	43620407	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	148	373	0	ENST00000355710.3:c.3016G>T	p.Glu1006Ter	p.E1006*	ENST00000355710	NM_020975.4	1006	Gag/Tag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670436	88670436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			755	75	445	1	ENST00000360948.2:c.1250C>A	p.Pro417His	p.P417H	ENST00000360948	NM_001012338.2	417	cCt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			695	62	457	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15281164	15281164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	57	453	0	ENST00000263388.2:c.5092G>T	p.Gly1698Cys	p.G1698C	ENST00000263388	NM_000435.2	1698	Ggc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408858	41408858	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			841	144	462	0	ENST00000373198.4:c.568A>T	p.Arg190Ter	p.R190*	ENST00000373198	NM_133170.3	190	Aga/Tga																																																																														
WT1	7490	MSKCC	GRCh37	11	32410700	32410700	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002026-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			761	50	504	0	ENST00000332351.3:c.1458del	p.Trp486CysfsTer14	p.W486Cfs*14	ENST00000332351	NM_024426.4	486	tgG/tg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002027-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	99	327	1	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258070	123258070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002027-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	65	480	1	ENST00000358487.5:c.1611G>A	p.Met537Ile	p.M537I	ENST00000358487	NM_000141.4	537	atG/atA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432693	49432693	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002027-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	18	292	2	ENST00000301067.7:c.8446C>T	p.Gln2816Ter	p.Q2816*	ENST00000301067	NM_003482.3	2816	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088774	27088805	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTATGGTCCCCAGGGGGGTCAGTATGGCCC	AGCTATGGTCCCCAGGGGGGTCAGTATGGCCC	-			P-0002027-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	40	299	0	ENST00000324856.7:c.2384_2415delGCTATGGTCCCCAGGGGGGTCAGTATGGCCCA	p.Ser795ThrfsTer11	p.S795Tfs*11	ENST00000324856	NM_006015.4	795	AGCTATGGTCCCCAGGGGGGTCAGTATGGCCCa/a																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396372	396372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002027-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	25	406	0	ENST00000262320.3:c.654delC	p.Val220SerfsTer22	p.V220Sfs*22	ENST00000262320	NM_003502.3	218	ccC/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	133	469	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112173538	112173538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	134	384	2	ENST00000257430.4:c.2247G>T	p.Leu749Phe	p.L749F	ENST00000257430	NM_000038.5	749	ttG/ttT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0002028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	61	88	0	ENST00000371953.3:c.802-2A>C		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
SMARCD1	6602	MSKCC	GRCh37	12	50479268	50479268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	103	191	0	ENST00000394963.4:c.116G>A	p.Arg39Gln	p.R39Q	ENST00000394963	NM_003076.4	39	cGa/cAa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39570459	39570459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			797	84	451	0	ENST00000262039.4:c.655G>A	p.Val219Ile	p.V219I	ENST00000262039	NM_002647.2	219	Gtt/Att																																																																														
NF2	4771	MSKCC	GRCh37	22	30057221	30057221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	159	451	1	ENST00000338641.4:c.703G>A	p.Gly235Arg	p.G235R	ENST00000338641	NM_000268.3	235	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	98	393	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	334	306	1	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976745	2976745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	128	502	1	ENST00000396946.4:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000396946	NM_032415.4	423	Cgg/Tgg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	150	460	0	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	325	375	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																														
AXL	558	MSKCC	GRCh37	19	41748914	41748914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	98	397	0	ENST00000301178.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000301178	NM_021913.4	480	cGt/cAt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56183322	56183323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002032-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	123	329	0	ENST00000399503.3:c.4232_4233insT	p.Thr1412AspfsTer8	p.T1412Dfs*8	ENST00000399503	NM_005921.1	1411	ggg/ggTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0002033-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			803	99	348	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217245	66217245	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002033-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	83	296	0	ENST00000273854.3:c.2370C>G	p.Tyr790Ter	p.Y790*	ENST00000273854	NM_004439.5	790	taC/taG																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032408	10032408	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002033-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	38	89	0	ENST00000330684.3:c.415G>T	p.Asp139Tyr	p.D139Y	ENST00000330684	NM_001134407.1	139	Gat/Tat																																																																														
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002033-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			753	142	251	0	ENST00000326873.7:c.465-2A>G		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610243	10610243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002033-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			983	149	399	0	ENST00000171111.5:c.467T>C	p.Met156Thr	p.M156T	ENST00000171111	NM_203500.1	156	aTg/aCg																																																																														
NF1	4763	MSKCC	GRCh37	17	29557859	29557859	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0002033-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	44	131	0	ENST00000358273.4:c.3114del		p.X1038_splice	ENST00000358273	NM_001042492.2	1038																																																																															
APC	324	MSKCC	GRCh37	5	112174217	112174217	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002035-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	66	371	0	ENST00000257430.4:c.2926A>T	p.Arg976Ter	p.R976*	ENST00000257430	NM_000038.5	976	Aga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002035-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	53	208	0	ENST00000269305.4:c.511del	p.Glu171ArgfsTer3	p.E171Rfs*3	ENST00000269305	NM_001126112.2	171	Gag/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002036-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	279	476	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002036-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	257	475	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38975702	38975702	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002038-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			656	61	337	0	ENST00000357387.3:c.826G>C	p.Asp276His	p.D276H	ENST00000357387	NM_152756.3	276	Gac/Cac																																																																														
TET1	80312	MSKCC	GRCh37	10	70442723	70442723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002038-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	68	423	0	ENST00000373644.4:c.5045G>T	p.Ser1682Ile	p.S1682I	ENST00000373644	NM_030625.2	1682	aGc/aTc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434214	121434214	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0002038-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	102	269	0	ENST00000257555.6:c.1105C>G	p.Leu369Val	p.L369V	ENST00000257555		369	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576863	7576863	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002038-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	106	353	0	ENST00000269305.4:c.983del	p.Phe328SerfsTer17	p.F328Sfs*17	ENST00000269305	NM_001126112.2	328	tTc/tc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0002038-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	113	347	0	ENST00000275493.2:c.2239_2240delTTinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002143-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	175	266	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0002143-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			781	275	345	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105676	27105676	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002143-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	67	314	1	ENST00000324856.7:c.5287G>T	p.Glu1763Ter	p.E1763*	ENST00000324856	NM_006015.4	1763	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884485	151884485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002143-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1054	101	372	0	ENST00000262189.6:c.4870G>T	p.Gly1624Ter	p.G1624*	ENST00000262189	NM_170606.2	1624	Gga/Tga																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641608	23641608	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002179-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	32	364	0	ENST00000261584.4:c.1867A>C	p.Lys623Gln	p.K623Q	ENST00000261584	NM_024675.3	623	Aag/Cag																																																																														
APC	324	MSKCC	GRCh37	5	112103053	112103053	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002302-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			62	13	318	0	ENST00000257430.4:c.388A>C	p.Ser130Arg	p.S130R	ENST00000257430	NM_000038.5	130	Agt/Cgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685304	89685304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002302-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	57	221	0	ENST00000371953.3:c.199A>G	p.Ile67Val	p.I67V	ENST00000371953	NM_000314.4	67	Ata/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7579559	7579559	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002302-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			23	89	333	0	ENST00000269305.4:c.128T>A	p.Leu43Ter	p.L43*	ENST00000269305	NM_001126112.2	43	tTg/tAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			690	181	517	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164951	47164951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	205	415	0	ENST00000409792.3:c.1175C>T	p.Ser392Phe	p.S392F	ENST00000409792	NM_014159.6	392	tCc/tTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209282	98209282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			674	197	562	0	ENST00000331920.6:c.4256G>T	p.Arg1419Leu	p.R1419L	ENST00000331920	NM_000264.3	1419	cGg/cTg																																																																														
RB1	5925	MSKCC	GRCh37	13	49033916	49033916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	211	494	0	ENST00000267163.4:c.2053C>T	p.Gln685Ter	p.Q685*	ENST00000267163	NM_000321.2	685	Cag/Tag																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22162082	22162082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	124	397	0	ENST00000215832.6:c.173C>T	p.Pro58Leu	p.P58L	ENST00000215832	NM_002745.4	58	cCc/cTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41560056	41560056	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0002340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			671	179	525	0	ENST00000263253.7:c.3729-1G>T		p.X1243_splice	ENST00000263253	NM_001429.3	1243																																																																															
STK11	6794	MSKCC	GRCh37	19	1207076	1207077	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	133	461	1	ENST00000326873.7:c.169dup	p.Glu57GlyfsTer106	p.E57Gfs*106	ENST00000326873	NM_000455.4	55	ctg/ctGg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610265	10610269	+	stop_gained	Nonsense_Mutation	ONP	CGCCC	CGCCC	AGCCA			P-0002340-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	170	504	0	ENST00000171111.5:c.441_445delinsTGGCT	p.Met147_Glu149delinsIleGlyTer	p.M147_E149delinsIG*	ENST00000171111	NM_203500.1	147	atGGGCGag/atTGGCTag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002368-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			279	62	304	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579488	7579491	+	frameshift_variant	Frame_Shift_Del	DEL	GCAT	GCAT	-			P-0002385-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			696	79	428	0	ENST00000269305.4:c.196_199del	p.Met66GlnfsTer56	p.M66Qfs*56	ENST00000269305	NM_001126112.2	66	ATGCca/ca																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439883	52439883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002402-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	123	334	0	ENST00000460680.1:c.829C>T	p.Gln277Ter	p.Q277*	ENST00000460680	NM_004656.3	277	Caa/Taa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440295	52440295	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002402-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			716	106	350	0	ENST00000460680.1:c.757C>T	p.Gln253Ter	p.Q253*	ENST00000460680	NM_004656.3	253	Cag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343619	118343619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002402-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	59	283	0	ENST00000534358.1:c.1745C>A	p.Thr582Lys	p.T582K	ENST00000534358	NM_005933.3	582	aCa/aAa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256535	115256535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002404-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	295	536	0	ENST00000369535.4:c.176C>A	p.Ala59Asp	p.A59D	ENST00000369535	NM_002524.4	59	gCt/gAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49441815	49441816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002404-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	364	426	1	ENST00000301067.7:c.4168dupG	p.Ala1390GlyfsTer42	p.A1390Gfs*42	ENST00000301067	NM_003482.3	1390	gca/gGca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578393	7578405	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGTGGGGGCAG	ATGGTGGGGGCAG	-			P-0002404-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			52	233	285	0	ENST00000269305.4:c.525_537del	p.Cys176SerfsTer67	p.C176Sfs*67	ENST00000269305	NM_001126112.2	175	cgCTGCCCCCACCAT/cg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			624	226	555	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
JUN	3725	MSKCC	GRCh37	1	59248397	59248397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	57	248	0	ENST00000371222.2:c.346C>G	p.Arg116Gly	p.R116G	ENST00000371222	NM_002228.3	116	Cgc/Ggc																																																																														
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			707	108	470	1	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248120	110248120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			624	102	440	0	ENST00000374672.4:c.1352C>T	p.Thr451Met	p.T451M	ENST00000374672	NM_004235.4	451	aCg/aTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10260241	10260241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			675	51	481	0	ENST00000340748.4:c.2426C>T	p.Ser809Leu	p.S809L	ENST00000340748		809	tCg/tTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578289	28578289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002408-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	151	316	2	ENST00000241453.7:c.2882G>A	p.Arg961His	p.R961H	ENST00000241453	NM_004119.2	961	cGt/cAt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65303765	65303765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002409-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	331	315	0	ENST00000342505.4:c.2990G>A	p.Arg997Gln	p.R997Q	ENST00000342505	NM_002227.2	997	cGg/cAg																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0002409-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			610	378	371	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593576	55593606	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCACAGAAACCCATGTATGAAGTACAGTGGA	CCACAGAAACCCATGTATGAAGTACAGTGGA	-			P-0002409-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	375	426	1	ENST00000288135.5:c.1648-6_1672del		p.X550_splice	ENST00000288135	NM_000222.2	550																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71096159	71096160	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AG			P-0002443-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	63	337	0	ENST00000318789.4:c.597_598delinsCT	p.Leu199_Gln200delinsPheTer	p.L199_Q200delinsF*	ENST00000318789	NM_032682.5	199	ttGCag/ttCTag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247366	71247366	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002443-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	65	304	0	ENST00000318789.4:c.167del	p.Gln56ArgfsTer26	p.Q56Rfs*26	ENST00000318789	NM_032682.5	56	cAg/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			806	271	235	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643368	52643368	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			885	175	321	0	ENST00000394830.3:c.2528A>T	p.His843Leu	p.H843L	ENST00000394830	NM_018313.4	843	cAt/cTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468500	89468501	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			515	154	200	0	ENST00000336596.2:c.2034_2035delinsAT	p.Asp678_His679delinsGluTyr	p.D678_H679delinsEY	ENST00000336596	NM_005233.5	678	gaCCac/gaATac																																																																														
KIT	3815	MSKCC	GRCh37	4	55602904	55602904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	246	216	0	ENST00000288135.5:c.2614G>A	p.Gly872Arg	p.G872R	ENST00000288135	NM_000222.2	872	Gga/Aga																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143191928	143191928	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	215	188	0	ENST00000262992.4:c.504-1G>A		p.X168_splice	ENST00000262992	NM_001101669.1	168																																																																															
CSF1R	1436	MSKCC	GRCh37	5	149433947	149433947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	285	212	0	ENST00000286301.3:c.2701C>A	p.Pro901Thr	p.P901T	ENST00000286301	NM_005211.3	901	Ccc/Acc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517973	8517973	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	279	319	0	ENST00000356435.5:c.1418A>T	p.Asp473Val	p.D473V	ENST00000356435		473	gAc/gTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971173	21971173	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	81	58	0	ENST00000304494.5:c.185T>C	p.Leu62Pro	p.L62P	ENST00000304494	NM_000077.4	62	cTg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971173	21971173	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	81	58	0	ENST00000304494.5:c.185T>C	p.Leu62Pro	p.L62P	ENST00000304494	NM_000077.4	62	cTg/cCg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346335	73346335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	144	245	0	ENST00000377767.4:c.1465G>A	p.Ala489Thr	p.A489T	ENST00000377767	NM_014953.3	489	Gct/Act																																																																														
PALB2	79728	MSKCC	GRCh37	16	23637632	23637632	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs78179744		P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			912	165	406	0	ENST00000261584.4:c.2673C>G	p.Cys891Trp	p.C891W	ENST00000261584	NM_024675.3	891	tgC/tgG																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78811722	78811722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	254	249	0	ENST00000306801.3:c.1137G>T	p.Trp379Cys	p.W379C	ENST00000306801	NM_020761.2	379	tgG/tgT																																																																														
STK11	6794	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	239	211	0	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100110	11100110	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	220	196	0	ENST00000344626.4:c.1237del	p.Gln413ArgfsTer88	p.Q413Rfs*88	ENST00000344626	NM_003072.3	412	ttC/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	296	240	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602564	10602565	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0002444-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	166	192	0	ENST00000171111.5:c.1013_1014delinsTT	p.Ser338Phe	p.S338F	ENST00000171111	NM_203500.1	338	tCG/tTT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	321	443	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502651	149502651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	62	319	1	ENST00000261799.4:c.2137G>A	p.Ala713Thr	p.A713T	ENST00000261799	NM_002609.3	713	Gcg/Acg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738801	145738801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	68	291	0	ENST00000428558.2:c.2264G>A	p.Arg755Gln	p.R755Q	ENST00000428558	NM_004260.3	755	cGg/cAg																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981895	101981895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	60	402	0	ENST00000282441.5:c.316C>G	p.Arg106Gly	p.R106G	ENST00000282441	NM_001130145.2	106	Cga/Gga																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524597	103524597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	103	476	0	ENST00000355739.4:c.2728C>A	p.His910Asn	p.H910N	ENST00000355739	NM_000123.3	910	Cat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099920	27099921	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	147	346	0	ENST00000324856.7:c.3800_3801del	p.Gly1267AlafsTer19	p.G1267Afs*19	ENST00000324856	NM_006015.4	1267	GGg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7574002	7574022	+	inframe_deletion	In_Frame_Del	DEL	CGGAACATCTCGAAGCGCTCA	CGGAACATCTCGAAGCGCTCA	-			P-0002446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	239	634	0	ENST00000269305.4:c.1005_1025del	p.Arg337_Glu343del	p.R337_E343del	ENST00000269305	NM_001126112.2	335	cgTGAGCGCTTCGAGATGTTCCGa/cga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002451-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	192	240	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78681705	78681705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002451-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	122	436	0	ENST00000306801.3:c.413G>A	p.Arg138His	p.R138H	ENST00000306801	NM_020761.2	138	cGt/cAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0002451-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	214	352	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002453-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	101	403	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0002454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	240	434	0	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499832	8499832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	74	307	0	ENST00000356435.5:c.2137G>A	p.Gly713Ser	p.G713S	ENST00000356435		713	Ggt/Agt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	162	173	0	ENST00000304494.5:c.260G>C	p.Arg87Pro	p.R87P	ENST00000304494	NM_000077.4	87	cGg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	162	173	0	ENST00000304494.5:c.260G>C	p.Arg87Pro	p.R87P	ENST00000304494	NM_000077.4	87	cGg/cCg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625251	69625251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148203315		P-0002454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	97	394	0	ENST00000334134.2:c.542G>A	p.Arg181His	p.R181H	ENST00000334134	NM_005247.2	181	cGc/cAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299833	15299833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	196	354	0	ENST00000263388.2:c.1345C>T	p.Arg449Cys	p.R449C	ENST00000263388	NM_000435.2	449	Cgc/Tgc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002456-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			797	27	301	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248482	212248482	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002456-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			981	223	358	0	ENST00000342788.4:c.3785A>G	p.Tyr1262Cys	p.Y1262C	ENST00000342788	NM_005235.2	1262	tAc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002456-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			515	16	265	0	ENST00000263967.3:c.1033A>G	p.Asn345Asp	p.N345D	ENST00000263967	NM_006218.2	345	Aat/Gat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541727	187541727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002456-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	175	383	0	ENST00000441802.2:c.6013G>C	p.Gly2005Arg	p.G2005R	ENST00000441802	NM_005245.3	2005	Ggg/Cgg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118355640	118355640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002456-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	80	400	0	ENST00000534358.1:c.4282A>G	p.Ile1428Val	p.I1428V	ENST00000534358	NM_005933.3	1428	Ata/Gta																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435689	110435689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002456-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	51	96	0	ENST00000375856.3:c.2712G>A	p.Met904Ile	p.M904I	ENST00000375856	NM_003749.2	904	atG/atA																																																																														
CIC	23152	MSKCC	GRCh37	19	42788861	42788861	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002456-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			870	153	211	0	ENST00000575354.2:c.5A>G	p.Tyr2Cys	p.Y2C	ENST00000575354	NM_015125.3	2	tAt/tGt																																																																														
MPL	4352	MSKCC	GRCh37	1	43812465	43812465	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			274	116	398	1	ENST00000372470.3:c.1168C>T	p.Arg390Cys	p.R390C	ENST00000372470	NM_005373.2	390	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	1070	554	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966995	25966996	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	120	559	1	ENST00000435504.4:c.2210_2211delinsTT	p.Arg737Ile	p.R737I	ENST00000435504		737	aGG/aTT																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096600	178096600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			580	141	449	0	ENST00000397062.3:c.731C>T	p.Pro244Leu	p.P244L	ENST00000397062	NM_006164.4	244	cCa/cTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576866	212576866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	105	464	0	ENST00000342788.4:c.1033G>T	p.Ala345Ser	p.A345S	ENST00000342788	NM_005235.2	345	Gct/Tct																																																																														
ATR	545	MSKCC	GRCh37	3	142188333	142188333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			536	249	633	0	ENST00000350721.4:c.6398T>C	p.Leu2133Ser	p.L2133S	ENST00000350721	NM_001184.3	2133	tTa/tCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554966	187554966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	179	533	0	ENST00000441802.2:c.4195G>T	p.Asp1399Tyr	p.D1399Y	ENST00000441802	NM_005245.3	1399	Gac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1293621	1293621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	197	389	0	ENST00000310581.5:c.1380G>T	p.Gln460His	p.Q460H	ENST00000310581	NM_198253.2	460	caG/caT																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56170866	56170866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	242	453	0	ENST00000399503.3:c.1694G>T	p.Gly565Val	p.G565V	ENST00000399503	NM_005921.1	565	gGa/gTa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468059	50468059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	171	378	0	ENST00000331340.3:c.1294C>A	p.His432Asn	p.H432N	ENST00000331340	NM_006060.4	432	Cac/Aac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945465	151945465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	202	446	1	ENST00000262189.6:c.2054C>T	p.Pro685Leu	p.P685L	ENST00000262189	NM_170606.2	685	cCa/cTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484339	8484339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			764	124	569	1	ENST00000356435.5:c.3193G>T	p.Gly1065Cys	p.G1065C	ENST00000356435		1065	Ggc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528777	8528777	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	184	394	1	ENST00000356435.5:c.355G>T	p.Asp119Tyr	p.D119Y	ENST00000356435		119	Gat/Tat																																																																														
ATM	472	MSKCC	GRCh37	11	108213985	108213985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	235	482	0	ENST00000278616.4:c.8305T>C	p.Trp2769Arg	p.W2769R	ENST00000278616	NM_000051.3	2769	Tgg/Cgg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527708	103527708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	167	462	0	ENST00000355739.4:c.3016G>C	p.Asp1006His	p.D1006H	ENST00000355739	NM_000123.3	1006	Gat/Cat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670428	88670428	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	208	581	0	ENST00000360948.2:c.1258A>T	p.Thr420Ser	p.T420S	ENST00000360948	NM_001012338.2	420	Act/Tct																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99473513	99473513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	86	346	0	ENST00000268035.6:c.2935G>A	p.Glu979Lys	p.E979K	ENST00000268035	NM_000875.3	979	Gag/Aag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52705201	52705201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	130	601	0	ENST00000322088.6:c.83G>T	p.Arg28Leu	p.R28L	ENST00000322088	NM_014225.5	28	cGc/cTc																																																																														
BTK	695	MSKCC	GRCh37	X	100630232	100630232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	107	733	0	ENST00000308731.7:c.41C>A	p.Ser14Tyr	p.S14Y	ENST00000308731	NM_000061.2	14	tCc/tAc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179050	123179050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	162	706	0	ENST00000218089.9:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000218089	NM_001042749.1	167	Cag/Tag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561131	9561132	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	205	444	1	ENST00000353224.5:c.650_651insC	p.Trp217CysfsTer9	p.W217Cfs*9	ENST00000353224	NM_177990.2	217	tgg/tgCg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24133945	24133945	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0002459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	73	254	0	ENST00000263121.7:c.98del	p.Gly33GlufsTer22	p.G33Efs*22	ENST00000263121	NM_003073.3	32	gtG/gt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212568859	212568859	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002460-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	59	453	0	ENST00000342788.4:c.1259T>C	p.Leu420Pro	p.L420P	ENST00000342788	NM_005235.2	420	cTg/cCg																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497552	125497552	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002460-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	65	235	0	ENST00000428830.2:c.116T>C	p.Ile39Thr	p.I39T	ENST00000428830	NM_001114121.2	39	aTt/aCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578220	7578221	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0002460-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	155	445	0	ENST00000269305.4:c.628_629delAA	p.Asn210HisfsTer5	p.N210Hfs*5	ENST00000269305	NM_001126112.2	210	AAc/c																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	224	501	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1064	376	600	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1017	356	563	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			699	222	434	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	124	189	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1432	138	644	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412375	139412375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	179	274	0	ENST00000277541.6:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000277541	NM_017617.3	424	Gag/Aag																																																																														
ALK	238	MSKCC	GRCh37	2	29474110	29474110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	212	403	0	ENST00000389048.3:c.2065G>T	p.Gly689Trp	p.G689W	ENST00000389048	NM_004304.4	689	Ggg/Tgg																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165831	118165831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			655	225	343	0	ENST00000369448.3:c.341G>A	p.Cys114Tyr	p.C114Y	ENST00000369448	NM_017709.3	114	tGt/tAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724560	162724560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			843	294	427	0	ENST00000367921.3:c.332G>A	p.Gly111Asp	p.G111D	ENST00000367921	NM_006182.2	111	gGc/gAc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175956168	175956168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1073	118	595	0	ENST00000367669.3:c.2044A>G	p.Thr682Ala	p.T682A	ENST00000367669	NM_022457.5	682	Aca/Gca																																																																														
CDC73	79577	MSKCC	GRCh37	1	193104571	193104571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			919	319	478	0	ENST00000367435.3:c.358C>T	p.Arg120Ter	p.R120*	ENST00000367435	NM_024529.4	120	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212293184	212293184	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			824	238	386	0	ENST00000342788.4:c.2668G>T	p.Glu890Ter	p.E890*	ENST00000342788	NM_005235.2	890	Gag/Tag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662389	227662389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	130	249	0	ENST00000305123.5:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000305123	NM_005544.2	356	Gcc/Acc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582380	119582380	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			814	107	409	0	ENST00000316626.5:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000316626		341	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549916	187549916	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			650	215	291	0	ENST00000441802.2:c.4325T>C	p.Val1442Ala	p.V1442A	ENST00000441802	NM_005245.3	1442	gTa/gCa																																																																														
APC	324	MSKCC	GRCh37	5	112177725	112177725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	49	284	0	ENST00000257430.4:c.6434G>A	p.Gly2145Glu	p.G2145E	ENST00000257430	NM_000038.5	2145	gGa/gAa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435645	149435645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			836	302	477	0	ENST00000286301.3:c.2498C>T	p.Thr833Met	p.T833M	ENST00000286301	NM_005211.3	833	aCg/aTg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449504	149449504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			803	282	415	0	ENST00000286301.3:c.1442A>G	p.Gln481Arg	p.Q481R	ENST00000286301	NM_005211.3	481	cAa/cGa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515229	149515229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			860	270	476	0	ENST00000261799.4:c.253C>T	p.Leu85Phe	p.L85F	ENST00000261799	NM_002609.3	85	Ctc/Ttc																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158662	26158662	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			58	34	24	0	ENST00000289316.2:c.265A>G	p.Thr89Ala	p.T89A	ENST00000289316	NM_138720.2	89	Acc/Gcc																																																																														
PAX5	5079	MSKCC	GRCh37	9	37015133	37015133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			928	251	614	0	ENST00000358127.4:c.271G>A	p.Ala91Thr	p.A91T	ENST00000358127	NM_001280556.1	91	Gcc/Acc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80646042	80646042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	122	210	1	ENST00000286548.4:c.110G>A	p.Arg37His	p.R37H	ENST00000286548	NM_002072.3	37	cGc/cAc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249983	110249983	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	120	227	0	ENST00000374672.4:c.692T>A	p.Leu231Gln	p.L231Q	ENST00000374672	NM_004235.4	231	cTg/cAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413964	139413964	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			917	372	518	0	ENST00000277541.6:c.796T>G	p.Cys266Gly	p.C266G	ENST00000277541	NM_017617.3	266	Tgc/Ggc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247618	123247618	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			866	268	486	0	ENST00000358487.5:c.1873C>T	p.Arg625Ter	p.R625*	ENST00000358487	NM_000141.4	625	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133202788	133202788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201165149		P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			985	240	443	0	ENST00000320574.5:c.6446G>A	p.Arg2149His	p.R2149H	ENST00000320574	NM_006231.2	2149	cGc/cAc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337696	73337696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			958	316	505	0	ENST00000377767.4:c.2020G>T	p.Val674Phe	p.V674F	ENST00000377767	NM_014953.3	674	Gtt/Ttt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457322	67457322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1068	132	436	0	ENST00000327367.4:c.296G>A	p.Ser99Asn	p.S99N	ENST00000327367	NM_005902.3	99	aGc/aAc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129668	2129668	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			670	256	427	0	ENST00000219476.3:c.3395C>T	p.Ser1132Leu	p.S1132L	ENST00000219476	NM_000548.3	1132	tCg/tTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68849631	68849631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			830	320	508	0	ENST00000261769.5:c.1534G>A	p.Glu512Lys	p.E512K	ENST00000261769	NM_004360.3	512	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15960949	15960949	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199804512		P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	295	391	0	ENST00000268712.3:c.6271A>G	p.Thr2091Ala	p.T2091A	ENST00000268712	NM_006311.3	2091	Aca/Gca																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78704462	78704462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	197	392	0	ENST00000306801.3:c.610A>G	p.Lys204Glu	p.K204E	ENST00000306801	NM_020761.2	204	Aag/Gag																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45375038	45375038	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	382	320	0	ENST00000262160.6:c.805T>C	p.Ser269Pro	p.S269P	ENST00000262160	NM_005901.5	269	Tca/Cca																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226989	2226989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	192	261	0	ENST00000398665.3:c.4469G>A	p.Gly1490Asp	p.G1490D	ENST00000398665	NM_032482.2	1490	gGc/gAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5216740	5216740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			808	279	525	0	ENST00000357368.4:c.4087C>T	p.His1363Tyr	p.H1363Y	ENST00000357368	NM_002850.3	1363	Cac/Tac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145644	11145644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	206	310	0	ENST00000344626.4:c.4006C>T	p.Arg1336Cys	p.R1336C	ENST00000344626	NM_003072.3	1336	Cgc/Tgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152065	11152065	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	191	329	0	ENST00000344626.4:c.4253A>G	p.Asp1418Gly	p.D1418G	ENST00000344626	NM_003072.3	1418	gAc/gGc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276202	15276202	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			755	254	497	0	ENST00000263388.2:c.5792A>T	p.Asp1931Val	p.D1931V	ENST00000263388	NM_000435.2	1931	gAt/gTt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302456	15302456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	281	444	0	ENST00000263388.2:c.815C>T	p.Thr272Met	p.T272M	ENST00000263388	NM_000435.2	272	aCg/aTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42795716	42795716	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			955	317	587	1	ENST00000575354.2:c.2705C>A	p.Ser902Ter	p.S902*	ENST00000575354	NM_015125.3	902	tCa/tAa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855603	45855603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			621	233	400	0	ENST00000391945.4:c.2054C>G	p.Ala685Gly	p.A685G	ENST00000391945	NM_000400.3	685	gCc/gGc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478776	57478776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			693	216	327	0	ENST00000371085.3:c.362A>G	p.Asn121Ser	p.N121S	ENST00000371085	NM_000516.4	121	aAc/aGc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655447	45655447	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	119	190	0	ENST00000407780.3:c.407-2A>G		p.X136_splice	ENST00000407780	NM_001283052.1	136																																																																															
RFWD2	64326	MSKCC	GRCh37	1	176118141	176118142	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CT			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			747	262	433	0	ENST00000367669.3:c.830_831dup	p.Gln278SerfsTer10	p.Q278Sfs*10	ENST00000367669	NM_022457.5	277	-/AG																																																																														
ERBB4	2066	MSKCC	GRCh37	2	213403253	213403254	+	frameshift_variant,start_lost,start_retained_variant	Frame_Shift_Ins	INS	-	-	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			859	283	503	0	ENST00000342788.4:c.1dup	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	atg/aAtg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			623	186	314	1	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056076	26056076	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			793	266	357	0	ENST00000343677.2:c.581del	p.Lys194SerfsTer?	p.K194Sfs*?	ENST00000343677	NM_005319.3	194	aAg/ag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636729	8636729	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			617	213	383	0	ENST00000356435.5:c.180del	p.Gly61GlufsTer11	p.G61Efs*11	ENST00000356435		60	aaA/aa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209616	98209617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761353734		P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	120	179	0	ENST00000331920.6:c.3921dup	p.Arg1308GlnfsTer17	p.R1308Qfs*17	ENST00000331920	NM_000264.3	1307	-/C																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244454	46244454	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			991	595	548	0	ENST00000334344.6:c.2552del	p.Pro851HisfsTer4	p.P851Hfs*4	ENST00000334344	NM_152641.2	850	Ccc/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			936	252	406	0	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67459125	67459125	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1044	375	583	0	ENST00000327367.4:c.545del	p.Pro182LeufsTer4	p.P182Lfs*4	ENST00000327367	NM_005902.3	181	Ccc/cc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832688	3832688	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			692	273	383	2	ENST00000262367.5:c.1570delC	p.Leu524TrpfsTer6	p.L524Wfs*6	ENST00000262367	NM_004380.2	524	Ctg/tg																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349090	11349090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	112	154	0	ENST00000332029.2:c.246del	p.Leu84Ter	p.L84*	ENST00000332029	NM_003745.1	82	ggG/gg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223376	2223376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			932	354	560	3	ENST00000398665.3:c.3492del	p.Val1165CysfsTer8	p.V1165Cfs*8	ENST00000398665	NM_032482.2	1163	Ccc/cc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938173	76938174	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1218	292	755	0	ENST00000373344.5:c.2574dup	p.Gly859ArgfsTer4	p.G859Rfs*4	ENST00000373344	NM_000489.3	858	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002465-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	569	470	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176684120	176684120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002465-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	194	478	0	ENST00000439151.2:c.4934C>T	p.Ala1645Val	p.A1645V	ENST00000439151	NM_022455.4	1645	gCt/gTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460444	8460444	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002465-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	207	404	0	ENST00000356435.5:c.3842T>G	p.Ile1281Ser	p.I1281S	ENST00000356435		1281	aTc/aGc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229455	98229455	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002465-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			820	237	503	0	ENST00000331920.6:c.2503G>T	p.Glu835Ter	p.E835*	ENST00000331920	NM_000264.3	835	Gaa/Taa																																																																														
TET1	80312	MSKCC	GRCh37	10	70405571	70405571	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002465-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	165	329	0	ENST00000373644.4:c.3085G>C	p.Asp1029His	p.D1029H	ENST00000373644	NM_030625.2	1029	Gac/Cac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437989	49437989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002465-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	269	404	0	ENST00000301067.7:c.5182G>A	p.Asp1728Asn	p.D1728N	ENST00000301067	NM_003482.3	1728	Gac/Aac																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008271	29008271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002465-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			847	241	573	0	ENST00000282397.4:c.600A>T	p.Lys200Asn	p.K200N	ENST00000282397	NM_002019.4	200	aaA/aaT																																																																														
TSC2	7249	MSKCC	GRCh37	16	2132442	2132442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002465-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			813	234	432	0	ENST00000219476.3:c.3820T>C	p.Ser1274Pro	p.S1274P	ENST00000219476	NM_000548.3	1274	Tct/Cct																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604779	48604779	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002465-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	202	410	0	ENST00000342988.3:c.1601A>C	p.Gln534Pro	p.Q534P	ENST00000342988	NM_005359.5	534	cAg/cCg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525131	9525132	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0002465-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			803	181	460	0	ENST00000353224.5:c.1753_1754delTCinsAT	p.Ser585Ile	p.S585I	ENST00000353224	NM_177990.2	585	TCt/ATt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243778438	243778439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002465-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			649	202	413	0	ENST00000263826.5:c.586dup	p.Glu196GlyfsTer9	p.E196Gfs*9	ENST00000263826	NM_005465.4	196	gaa/gGaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002468-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	44	392	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
CDH1	999	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002468-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	38	218	0	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68846057	68846057	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002468-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	21	418	0	ENST00000261769.5:c.1028T>G	p.Leu343Arg	p.L343R	ENST00000261769	NM_004360.3	343	cTg/cGg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680513	30680513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	108	449	0	ENST00000376406.3:c.1206C>A	p.Ser402Arg	p.S402R	ENST00000376406	NM_014641.2	402	agC/agA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412282	139412282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	99	411	0	ENST00000277541.6:c.1363G>A	p.Glu455Lys	p.E455K	ENST00000277541	NM_017617.3	455	Gag/Aag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562702	95562702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	118	497	0	ENST00000343455.3:c.4555G>A	p.Glu1519Lys	p.E1519K	ENST00000343455	NM_177438.2	1519	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	82	170	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
TET2	54790	MSKCC	GRCh37	4	106156825	106156825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	31	269	0	ENST00000380013.4:c.1726G>T	p.Glu576Ter	p.E576*	ENST00000380013	NM_001127208.2	576	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056280	27056281	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	55	184	0	ENST00000324856.7:c.1280dup	p.Gln428AlafsTer195	p.Q428Afs*195	ENST00000324856	NM_006015.4	426	acc/aCcc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111540	8111541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0002473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	189	268	0	ENST00000346208.3:c.1029_1030dup	p.Tyr344SerfsTer12	p.Y344Sfs*12	ENST00000346208		342	-/CT																																																																														
CBFB	865	MSKCC	GRCh37	16	67063715	67063717	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TCG	TCG	-			P-0002473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	106	108	0	ENST00000412916.2:c.165_165+2del		p.X55_splice	ENST00000412916		55																																																																															
NF1	4763	MSKCC	GRCh37	17	29654857	29654857	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0002473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	132	155	0	ENST00000358273.4:c.5609+1del		p.R1870fs	ENST00000358273	NM_001042492.2	1870	cGg/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	295	466	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			515	295	318	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455075	50455075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	301	330	0	ENST00000331340.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000331340	NM_006060.4	208	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	232	378	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118339539	118339539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1005	106	455	0	ENST00000534358.1:c.482G>T	p.Ser161Ile	p.S161I	ENST00000534358	NM_005933.3	161	aGt/aTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	252	425	0	ENST00000342988.3:c.1067C>A	p.Pro356His	p.P356H	ENST00000342988	NM_005359.5	356	cCt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	14	291	0	ENST00000342988.3:c.1156G>C	p.Gly386Arg	p.G386R	ENST00000342988	NM_005359.5	386	Ggt/Cgt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141502	11141502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	328	367	0	ENST00000344626.4:c.3479G>A	p.Gly1160Glu	p.G1160E	ENST00000344626	NM_003072.3	1160	gGg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	353	468	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0002477-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			589	174	541	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002477-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	326	492	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002479-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	131	447	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286829	212286829	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002479-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	171	357	0	ENST00000342788.4:c.2867G>T	p.Cys956Phe	p.C956F	ENST00000342788	NM_005235.2	956	tGt/tTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002479-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	146	491	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	107	374	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	37	390	0	ENST00000269305.4:c.467G>A	p.Arg156His	p.R156H	ENST00000269305	NM_001126112.2	156	cGc/cAc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683196	88683197	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	48	211	0	ENST00000372037.3:c.1407dup	p.Met470TyrfsTer3	p.M470Yfs*3	ENST00000372037	NM_004329.2	469	gat/gaTt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390791	139390791	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002486-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			87	36	184	0	ENST00000277541.6:c.7400C>A	p.Ser2467Ter	p.S2467*	ENST00000277541	NM_017617.3	2467	tCg/tAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412675	139412676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGTG			P-0002486-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	49	282	0	ENST00000277541.6:c.1164_1168dupCACCA	p.Asn390ThrfsTer243	p.N390Tfs*243	ENST00000277541	NM_017617.3	390	aac/aCACCAac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3823811	3823815	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAC	ATGAC	-			P-0002486-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	23	265	0	ENST00000262367.5:c.2400_2404delGTCAT	p.Ser801GlnfsTer29	p.S801Qfs*29	ENST00000262367	NM_004380.2	800	ccGTCATcc/cccc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	447	318	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	503	436	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	587	354	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	179	365	1	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157192784	157192784	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	221	400	0	ENST00000346085.5:c.1774T>G	p.Leu592Val	p.L592V	ENST00000346085	NM_020732.3	592	Ttg/Gtg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120226	70120226	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	561	314	1	ENST00000245479.2:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000245479	NM_000346.3	410	Cag/Tag																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119325	3119325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	245	366	0	ENST00000078429.4:c.857C>T	p.Ser286Leu	p.S286L	ENST00000078429	NM_002067.2	286	tCg/tTg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374390	31374390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			888	229	399	0	ENST00000328111.2:c.389G>A	p.Arg130His	p.R130H	ENST00000328111	NM_006892.3	130	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175068	112175069	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0002488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	167	355	0	ENST00000257430.4:c.3778_3779del	p.Gln1260AspfsTer15	p.Q1260Dfs*15	ENST00000257430	NM_000038.5	1259	atACag/atag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0002495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	16	274	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223814	2223814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	23	299	0	ENST00000326181.6:c.1112G>A	p.Arg371Gln	p.R371Q	ENST00000326181	NM_032271.2	371	cGg/cAg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131973916	131973916	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0002497-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	78	253	0	ENST00000265335.6:c.3618+1G>A		p.X1206_splice	ENST00000265335		1206																																																																															
HGF	3082	MSKCC	GRCh37	7	81381502	81381502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002497-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	110	514	0	ENST00000222390.5:c.559C>T	p.Pro187Ser	p.P187S	ENST00000222390	NM_000601.4	187	Ccc/Tcc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523592	106523592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002497-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	115	356	1	ENST00000359195.3:c.2744C>T	p.Ser915Phe	p.S915F	ENST00000359195	NM_002649.2	915	tCc/tTc																																																																														
MET	4233	MSKCC	GRCh37	7	116380041	116380041	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002497-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	97	539	0	ENST00000397752.3:c.1430T>G	p.Val477Gly	p.V477G	ENST00000397752	NM_000245.2	477	gTg/gGg																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514301	69514301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148589027		P-0002497-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	235	420	0	ENST00000294312.3:c.380G>A	p.Arg127His	p.R127H	ENST00000294312	NM_005117.2	127	cGc/cAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	418992	418992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002497-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	73	666	0	ENST00000399788.2:c.3355G>A	p.Glu1119Lys	p.E1119K	ENST00000399788	NM_001042603.1	1119	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438288	49438288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002497-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			548	111	333	0	ENST00000301067.7:c.4981G>A	p.Glu1661Lys	p.E1661K	ENST00000301067	NM_003482.3	1661	Gag/Aag																																																																														
AXIN1	8312	MSKCC	GRCh37	16	360032	360032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002497-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1000	75	357	1	ENST00000262320.3:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000262320	NM_003502.3	353	Cgc/Tgc																																																																														
NF1	4763	MSKCC	GRCh37	17	29654535	29654535	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002497-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	237	451	0	ENST00000358273.4:c.5287C>T	p.Gln1763Ter	p.Q1763*	ENST00000358273	NM_001042492.2	1763	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577573	7577573	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002497-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	243	351	0	ENST00000269305.4:c.708del	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taC/ta																																																																														
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	56	357	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460354	149460354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	57	459	0	ENST00000286301.3:c.283G>A	p.Ala95Thr	p.A95T	ENST00000286301	NM_005211.3	95	Gcc/Acc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676341	37676341	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0002499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	76	407	0	ENST00000447079.4:c.3095+1G>A		p.X1032_splice	ENST00000447079	NM_015083.1	1032																																																																															
KDM5A	5927	MSKCC	GRCh37	12	443492	443492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			644	68	398	0	ENST00000399788.2:c.1405C>T	p.Pro469Ser	p.P469S	ENST00000399788	NM_001042603.1	469	Ccg/Tcg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657676	37658063	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTTGCTGAATAACAGGTAACATAGTAACCAAATAAGATTAAGCACTTTCCTCTTCTCCTCTGACCTTTTTAGTTTCAAATGGTTAATTGGTATTATAATTAGACCTAATAGTGCAGTATTCACACACTATTTAGTGATATTTCCTACGTTCAGTGTGGGAGAAACATACCTGCTCCTTTAGCTGTTCTTGAGCCTTTTCTCAGTTACCAGCTTTCTGAGTAAACATTGATGTGCAGTTGGTGATTGGCCTTTTCTGCCTAGTACTTACTCCTAGGTTTTAATAGCGTAAACAAACAGGAATCTGGTTATGAACAGGTGTTAATTCATCAGAAGTTTTTATCATTTGCTTTCTTCTTTTCTGTTTATTTGCCTATACTGCATTGGTA	ATTTTGCTGAATAACAGGTAACATAGTAACCAAATAAGATTAAGCACTTTCCTCTTCTCCTCTGACCTTTTTAGTTTCAAATGGTTAATTGGTATTATAATTAGACCTAATAGTGCAGTATTCACACACTATTTAGTGATATTTCCTACGTTCAGTGTGGGAGAAACATACCTGCTCCTTTAGCTGTTCTTGAGCCTTTTCTCAGTTACCAGCTTTCTGAGTAAACATTGATGTGCAGTTGGTGATTGGCCTTTTCTGCCTAGTACTTACTCCTAGGTTTTAATAGCGTAAACAAACAGGAATCTGGTTATGAACAGGTGTTAATTCATCAGAAGTTTTTATCATTTGCTTTCTTCTTTTCTGTTTATTTGCCTATACTGCATTGGTA	-			P-0002499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	27	348	0	ENST00000447079.4:c.2595_2609+373del		p.X865_splice	ENST00000447079	NM_015083.1	865																																																																															
IRS2	8660	MSKCC	GRCh37	13	110435318	110435318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002500-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	51	76	0	ENST00000375856.3:c.3083C>T	p.Ser1028Phe	p.S1028F	ENST00000375856	NM_003749.2	1028	tCt/tTt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435814	110435814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002500-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	43	54	0	ENST00000375856.3:c.2587C>T	p.His863Tyr	p.H863Y	ENST00000375856	NM_003749.2	863	Cac/Tac																																																																														
RB1	5925	MSKCC	GRCh37	13	49030487	49030487	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0002501-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			153	163	307	0	ENST00000267163.4:c.1960+2T>G		p.X654_splice	ENST00000267163	NM_000321.2	654																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436655	52436655	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002502-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	190	387	0	ENST00000460680.1:c.2019del	p.Glu673AspfsTer19	p.E673Dfs*19	ENST00000460680	NM_004656.3	673	gaG/ga																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002505-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	113	366	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728573	190728573	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002505-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	140	413	0	ENST00000441310.2:c.1961T>G	p.Ile654Arg	p.I654R	ENST00000441310	NM_000534.4	654	aTa/aGa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			594	676	345	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			711	233	308	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48953737	48953737	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	338	394	0	ENST00000267163.4:c.1340A>T	p.Lys447Ile	p.K447I	ENST00000267163	NM_000321.2	447	aAa/aTa																																																																														
RB1	5925	MSKCC	GRCh37	13	48953758	48953758	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			534	322	392	0	ENST00000267163.4:c.1361A>G	p.Tyr454Cys	p.Y454C	ENST00000267163	NM_000321.2	454	tAc/tGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29546081	29546081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	311	405	0	ENST00000358273.4:c.1586T>C	p.Leu529Pro	p.L529P	ENST00000358273	NM_001042492.2	529	cTc/cCc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141006	55141006	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	33	408	0	ENST00000257290.5:c.1654-2A>G		p.X552_splice	ENST00000257290	NM_006206.4	552																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78933971	78933971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			45	23	403	0	ENST00000306801.3:c.3571C>T	p.Arg1191Cys	p.R1191C	ENST00000306801	NM_020761.2	1191	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574011	7574012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGAAGCGCTCA			P-0002514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	23	425	0	ENST00000269305.4:c.1005_1015dup	p.Glu339ValfsTer10	p.E339Vfs*10	ENST00000269305	NM_001126112.2	339	gag/gTGAGCGCTTCGag																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	225	351	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	254	352	1	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0002526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	54	391	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
ETV6	2120	MSKCC	GRCh37	12	12043978	12043978	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0002526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	48	265	0	ENST00000396373.4:c.1357T>G	p.Ter453GlyextTer30	p.*453Gext*30	ENST00000396373	NM_001987.4	453	Tga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002531-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			669	114	597	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	12	216	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			798	56	449	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1034	97	475	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143326410	143326410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			802	69	388	0	ENST00000262992.4:c.204C>G	p.Ile68Met	p.I68M	ENST00000262992	NM_001101669.1	68	atC/atG																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001347	150001347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1077	94	614	0	ENST00000253339.5:c.2257G>A	p.Glu753Lys	p.E753K	ENST00000253339		753	Gag/Aag																																																																														
RET	5979	MSKCC	GRCh37	10	43615101	43615101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			851	72	416	0	ENST00000355710.3:c.2515G>A	p.Asp839Asn	p.D839N	ENST00000355710	NM_020975.4	839	Gac/Aac																																																																														
CDH1	999	MSKCC	GRCh37	16	68835584	68835584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			782	79	421	0	ENST00000261769.5:c.175G>A	p.Asp59Asn	p.D59N	ENST00000261769	NM_004360.3	59	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			762	84	322	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	70	336	0	ENST00000269305.4:c.438G>C	p.Trp146Cys	p.W146C	ENST00000269305	NM_001126112.2	146	tgG/tgC																																																																														
STK11	6794	MSKCC	GRCh37	19	1222986	1222986	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	95	222	0	ENST00000326873.7:c.923G>T	p.Trp308Leu	p.W308L	ENST00000326873	NM_000455.4	308	tGg/tTg																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20152121	20152121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	99	310	0	ENST00000379607.5:c.209G>T	p.Trp70Leu	p.W70L	ENST00000379607	NM_001412.3	70	tGg/tTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098951	178098953	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0002548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			901	66	426	0	ENST00000397062.3:c.92_94del	p.Gly31del	p.G31del	ENST00000397062	NM_006164.4	31	gGAGta/gta																																																																														
MPL	4352	MSKCC	GRCh37	1	43803850	43803850	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	78	337	0	ENST00000372470.3:c.160G>T	p.Glu54Ter	p.E54*	ENST00000372470	NM_005373.2	54	Gag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270189	66270189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	61	332	0	ENST00000273854.3:c.1693G>T	p.Ala565Ser	p.A565S	ENST00000273854	NM_004439.5	565	Gca/Tca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170233	32170233	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	75	286	0	ENST00000375023.3:c.3375C>A	p.Cys1125Ter	p.C1125*	ENST00000375023	NM_004557.3	1125	tgC/tgA																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954915	2954915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	334	357	0	ENST00000396946.4:c.2795G>T	p.Arg932Leu	p.R932L	ENST00000396946	NM_032415.4	932	cGg/cTg																																																																														
ATM	472	MSKCC	GRCh37	11	108170461	108170462	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	139	376	1	ENST00000278616.4:c.5026_5027delinsTT	p.Gly1676Leu	p.G1676L	ENST00000278616	NM_000051.3	1676	GGa/TTa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012483	29012483	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	53	299	0	ENST00000282397.4:c.389-1G>C		p.X130_splice	ENST00000282397	NM_002019.4	130																																																																															
DICER1	23405	MSKCC	GRCh37	14	95562971	95562971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			560	90	449	0	ENST00000343455.3:c.4286G>T	p.Trp1429Leu	p.W1429L	ENST00000343455	NM_177438.2	1429	tGg/tTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566234	95566234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	84	353	0	ENST00000343455.3:c.4089G>T	p.Lys1363Asn	p.K1363N	ENST00000343455	NM_177438.2	1363	aaG/aaT																																																																														
TSC2	7249	MSKCC	GRCh37	16	2125848	2125848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	211	427	0	ENST00000219476.3:c.2594A>G	p.Tyr865Cys	p.Y865C	ENST00000219476	NM_000548.3	865	tAt/tGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900342	3900342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			801	343	404	0	ENST00000262367.5:c.754G>T	p.Gly252Cys	p.G252C	ENST00000262367	NM_004380.2	252	Ggt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916159	9916159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			723	72	442	0	ENST00000330684.3:c.2130G>T	p.Gln710His	p.Q710H	ENST00000330684	NM_001134407.1	710	caG/caT																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763323	59763323	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			599	191	514	0	ENST00000259008.2:c.2779A>G	p.Ser927Gly	p.S927G	ENST00000259008	NM_032043.2	927	Agt/Ggt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	85	453	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955145	17955145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	84	321	0	ENST00000458235.1:c.82G>T	p.Val28Leu	p.V28L	ENST00000458235	NM_000215.3	28	Gtg/Ttg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714370	40714370	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	73	286	0	ENST00000373198.4:c.4027C>T	p.Arg1343Trp	p.R1343W	ENST00000373198	NM_133170.3	1343	Cgg/Tgg																																																																														
ERG	2078	MSKCC	GRCh37	21	39795436	39795436	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002551-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			621	136	392	0	ENST00000288319.7:c.284del	p.Gly95AlafsTer8	p.G95Afs*8	ENST00000288319	NM_182918.3	95	gGc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002553-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	40	326	0	ENST00000269305.4:c.713G>C	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	tGt/tCt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0002557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	99	300	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			628	28	368	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623855	28623855	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	60	389	0	ENST00000241453.7:c.799C>A	p.Pro267Thr	p.P267T	ENST00000241453	NM_004119.2	267	Ccc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002559-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	227	431	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	113	435	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775780	9775780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	25	263	0	ENST00000377346.4:c.323G>T	p.Arg108Leu	p.R108L	ENST00000377346	NM_005026.3	108	cGc/cTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255709	16255709	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	28	208	0	ENST00000375759.3:c.2974A>T	p.Asn992Tyr	p.N992Y	ENST00000375759	NM_015001.2	992	Aat/Tat																																																																														
ALK	238	MSKCC	GRCh37	2	30143226	30143226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	33	175	0	ENST00000389048.3:c.300G>T	p.Arg100Ser	p.R100S	ENST00000389048	NM_004304.4	100	agG/agT																																																																														
XPO1	7514	MSKCC	GRCh37	2	61708412	61708412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	34	319	1	ENST00000401558.2:c.2977C>G	p.Gln993Glu	p.Q993E	ENST00000401558	NM_003400.3	993	Caa/Gaa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61729416	61729416	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	38	425	0	ENST00000401558.2:c.331A>G	p.Ile111Val	p.I111V	ENST00000401558	NM_003400.3	111	Atc/Gtc																																																																														
CASP8	841	MSKCC	GRCh37	2	202131354	202131354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	28	277	0	ENST00000358485.4:c.322C>T	p.Gln108Ter	p.Q108*	ENST00000358485	NM_001080125.1	108	Cag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286731	212286731	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	62	257	0	ENST00000342788.4:c.2964+1G>T		p.X988_splice	ENST00000342788	NM_005235.2	988																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	68	374	0	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488692	212488692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	89	354	0	ENST00000342788.4:c.2157G>T	p.Lys719Asn	p.K719N	ENST00000342788	NM_005235.2	719	aaG/aaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212587173	212587173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	89	396	0	ENST00000342788.4:c.828G>T	p.Glu276Asp	p.E276D	ENST00000342788	NM_005235.2	276	gaG/gaT																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715714	30715714	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	63	273	0	ENST00000359013.4:c.1447A>T	p.Thr483Ser	p.T483S	ENST00000359013	NM_001024847.2	483	Aca/Tca																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72897455	72897455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	33	291	0	ENST00000325599.8:c.37G>C	p.Asp13His	p.D13H	ENST00000325599	NM_018130.2	13	Gac/Cac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89457269	89457269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	81	294	0	ENST00000336596.2:c.1750G>T	p.Gly584Cys	p.G584C	ENST00000336596	NM_005233.5	584	Ggc/Tgc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499382	89499382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	88	267	0	ENST00000336596.2:c.2552C>A	p.Ala851Asp	p.A851D	ENST00000336596	NM_005233.5	851	gCt/gAt																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664694	138664694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	14	16	0	ENST00000330315.3:c.871C>A	p.His291Asn	p.H291N	ENST00000330315	NM_023067.3	291	Cac/Aac																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665244	138665244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	46	477	0	ENST00000330315.3:c.321C>G	p.Ser107Arg	p.S107R	ENST00000330315	NM_023067.3	107	agC/agG																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007344	143007344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	40	336	0	ENST00000262992.4:c.2440C>G	p.Gln814Glu	p.Q814E	ENST00000262992	NM_001101669.1	814	Caa/Gaa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449582	149449582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	68	373	0	ENST00000286301.3:c.1364C>A	p.Pro455His	p.P455H	ENST00000286301	NM_005211.3	455	cCt/cAt																																																																														
NPM1	4869	MSKCC	GRCh37	5	170818789	170818789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	66	225	0	ENST00000296930.5:c.338G>T	p.Gly113Val	p.G113V	ENST00000296930	NM_002520.6	113	gGa/gTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176719036	176719036	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	151	303	0	ENST00000439151.2:c.6340A>T	p.Thr2114Ser	p.T2114S	ENST00000439151	NM_022455.4	2114	Aca/Tca																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790898	89790898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	24	225	0	ENST00000336032.3:c.285G>C	p.Lys95Asn	p.K95N	ENST00000336032	NM_006813.2	95	aaG/aaC																																																																														
PMS2	5395	MSKCC	GRCh37	7	6029549	6029549	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	101	391	0	ENST00000265849.7:c.1026A>T	p.Gln342His	p.Q342H	ENST00000265849	NM_000535.5	342	caA/caT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509227	106509227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	118	348	0	ENST00000359195.3:c.1221G>C	p.Glu407Asp	p.E407D	ENST00000359195	NM_002649.2	407	gaG/gaC																																																																														
EZH2	2146	MSKCC	GRCh37	7	148516738	148516738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	26	270	0	ENST00000320356.2:c.949G>A	p.Glu317Lys	p.E317K	ENST00000320356	NM_004456.4	317	Gaa/Aaa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148529808	148529808	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	114	342	0	ENST00000320356.2:c.281A>G	p.Gln94Arg	p.Q94R	ENST00000320356	NM_004456.4	94	cAa/cGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836311	151836311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	31	260	0	ENST00000262189.6:c.14494G>T	p.Asp4832Tyr	p.D4832Y	ENST00000262189	NM_170606.2	4832	Gac/Tac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874784	151874784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	111	289	0	ENST00000262189.6:c.7754C>T	p.Ser2585Phe	p.S2585F	ENST00000262189	NM_170606.2	2585	tCt/tTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879178	151879178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	118	431	0	ENST00000262189.6:c.5767G>T	p.Val1923Leu	p.V1923L	ENST00000262189	NM_170606.2	1923	Gtg/Ttg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275466	38275466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	93	409	0	ENST00000425967.3:c.1567G>T	p.Val523Leu	p.V523L	ENST00000425967	NM_001174067.1	523	Gtg/Ttg																																																																														
NBN	4683	MSKCC	GRCh37	8	90958472	90958472	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	68	308	0	ENST00000265433.3:c.1966T>A	p.Leu656Met	p.L656M	ENST00000265433	NM_002485.4	656	Ttg/Atg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069158	5069158	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	41	360	0	ENST00000381652.3:c.1463C>G	p.Ser488Ter	p.S488*	ENST00000381652	NM_004972.3	488	tCa/tGa																																																																														
TET1	80312	MSKCC	GRCh37	10	70450613	70450613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	45	518	1	ENST00000373644.4:c.5453C>T	p.Pro1818Leu	p.P1818L	ENST00000373644	NM_030625.2	1818	cCc/cTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725091	89725091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	20	175	1	ENST00000371953.3:c.1074G>T	p.Glu358Asp	p.E358D	ENST00000371953	NM_000314.4	358	gaG/gaT																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741765	17741765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	60	316	0	ENST00000250003.3:c.436A>G	p.Lys146Glu	p.K146E	ENST00000250003	NM_002478.4	146	Aag/Gag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344222	118344222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	31	274	0	ENST00000534358.1:c.2348C>T	p.Ser783Phe	p.S783F	ENST00000534358	NM_005933.3	783	tCt/tTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246437	46246437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	82	413	0	ENST00000334344.6:c.4531G>A	p.Glu1511Lys	p.E1511K	ENST00000334344	NM_152641.2	1511	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246473	46246473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	73	374	0	ENST00000334344.6:c.4567G>C	p.Asp1523His	p.D1523H	ENST00000334344	NM_152641.2	1523	Gat/Cat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432521	49432521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	116	311	0	ENST00000301067.7:c.8618G>T	p.Gly2873Val	p.G2873V	ENST00000301067	NM_003482.3	2873	gGt/gTt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557681	21557681	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	109	482	0	ENST00000382592.4:c.2164G>T	p.Glu722Ter	p.E722*	ENST00000382592	NM_014572.2	722	Gag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915256	32915256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	89	278	2	ENST00000380152.3:c.6764C>A	p.Thr2255Lys	p.T2255K	ENST00000380152		2255	aCa/aAa																																																																														
AKT1	207	MSKCC	GRCh37	14	105237181	105237181	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	51	281	0	ENST00000349310.3:c.1264A>C	p.Ser422Arg	p.S422R	ENST00000349310	NM_001014432.1	422	Agc/Cgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031852	10031852	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	35	278	0	ENST00000330684.3:c.971T>A	p.Met324Lys	p.M324K	ENST00000330684	NM_001134407.1	324	aTg/aAg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646639	23646639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	64	244	0	ENST00000261584.4:c.1228G>T	p.Val410Phe	p.V410F	ENST00000261584	NM_024675.3	410	Gtt/Ttt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882377	89882377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	35	407	1	ENST00000389301.3:c.97G>A	p.Glu33Lys	p.E33K	ENST00000389301	NM_000135.2	33	Gaa/Aaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602932	10602932	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	90	291	0	ENST00000171111.5:c.646A>T	p.Lys216Ter	p.K216*	ENST00000171111	NM_203500.1	216	Aag/Tag																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386335	31386335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	41	375	0	ENST00000328111.2:c.1560G>T	p.Glu520Asp	p.E520D	ENST00000328111	NM_006892.3	520	gaG/gaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306625	41306625	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	26	354	0	ENST00000373198.4:c.1034A>G	p.Tyr345Cys	p.Y345C	ENST00000373198	NM_133170.3	345	tAt/tGt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419972	41419972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	36	389	0	ENST00000373198.4:c.349C>A	p.Pro117Thr	p.P117T	ENST00000373198	NM_133170.3	117	Cca/Aca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419987	41419987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	28	383	0	ENST00000373198.4:c.334C>A	p.Arg112Ser	p.R112S	ENST00000373198	NM_133170.3	112	Cgt/Agt																																																																														
ARAF	369	MSKCC	GRCh37	X	47422699	47422699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	26	372	0	ENST00000377045.4:c.171C>G	p.Asp57Glu	p.D57E	ENST00000377045	NM_001654.4	57	gaC/gaG																																																																														
ARAF	369	MSKCC	GRCh37	X	47430759	47430759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	26	460	0	ENST00000377045.4:c.1724C>A	p.Pro575His	p.P575H	ENST00000377045	NM_001654.4	575	cCc/cAc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239994	53239995	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	76	450	0	ENST00000375401.3:c.1446_1447delinsTT	p.Leu482_Glu483delinsPheTer	p.L482_E483delinsF*	ENST00000375401	NM_004187.3	482	ttGGaa/ttTTaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70345298	70345298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	33	449	0	ENST00000374080.3:c.2324C>T	p.Thr775Ile	p.T775I	ENST00000374080		775	aCc/aTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937193	76937193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	97	552	2	ENST00000373344.5:c.3555G>T	p.Lys1185Asn	p.K1185N	ENST00000373344	NM_000489.3	1185	aaG/aaT																																																																														
BTK	695	MSKCC	GRCh37	X	100617608	100617608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	78	436	0	ENST00000308731.7:c.461G>T	p.Cys154Phe	p.C154F	ENST00000308731	NM_000061.2	154	tGc/tTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39764347	39764347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002611-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	23	201	0	ENST00000288319.7:c.765del	p.Arg256GlyfsTer35	p.R256Gfs*35	ENST00000288319	NM_182918.3	255	ccC/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002643-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			935	59	369	0	ENST00000269305.4:c.716delA	p.Asn239ThrfsTer8	p.N239Tfs*8	ENST00000269305	NM_001126112.2	239	aAc/ac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002750-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			777	51	687	0	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002750-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			1050	241	594	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
MITF	4286	MSKCC	GRCh37	3	70014134	70014134	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002750-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			565	224	876	1	ENST00000352241.4:c.1298A>T	p.His433Leu	p.H433L	ENST00000352241	NM_198159.2	433	cAt/cTt																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626124	12626147	+	inframe_deletion	In_Frame_Del	DEL	AGAGTGTTGGAGCAGCTCAATGGA	AGAGTGTTGGAGCAGCTCAATGGA	-			P-0002750-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			383	88	494	0	ENST00000251849.4:c.1813_1836del	p.Ser605_Ser612del	p.S605_S612del	ENST00000251849	NM_002880.3	605	TCCATTGAGCTGCTCCAACACTCT/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0002766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	113	351	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610229	10610229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			654	102	373	0	ENST00000171111.5:c.481A>G	p.Met161Val	p.M161V	ENST00000171111	NM_203500.1	161	Atg/Gtg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132522	11132522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			649	54	334	0	ENST00000344626.4:c.2738C>T	p.Pro913Leu	p.P913L	ENST00000344626	NM_003072.3	913	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0002766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	28	264	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0002766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	28	264	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	110	316	0	ENST00000326873.7:c.169del	p.Glu57LysfsTer7	p.E57Kfs*7	ENST00000326873	NM_000455.4	55	ctG/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	182	264	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	50	352	0	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108203561	108203561	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002824-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			580	95	404	2	ENST00000278616.4:c.7861G>T	p.Glu2621Ter	p.E2621*	ENST00000278616	NM_000051.3	2621	Gag/Tag																																																																														
EP300	2033	MSKCC	GRCh37	22	41556699	41556699	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002824-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	71	338	0	ENST00000263253.7:c.3644T>A	p.Leu1215Ter	p.L1215*	ENST00000263253	NM_001429.3	1215	tTg/tAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436878	49436879	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002824-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			742	111	645	0	ENST00000301067.7:c.5624dup	p.Leu1875PhefsTer28	p.L1875Ffs*28	ENST00000301067	NM_003482.3	1875	tta/ttTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444363	49444366	+	frameshift_variant	Frame_Shift_Del	DEL	GGGG	GGGG	-			P-0002824-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	37	307	0	ENST00000301067.7:c.3005_3008del	p.Pro1002HisfsTer14	p.P1002Hfs*14	ENST00000301067	NM_003482.3	1002	cCCCCa/ca																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	338	467	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	519	379	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	832	453	1	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699320	117699320	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1079	61	521	0	ENST00000369458.3:c.321A>C	p.Gln107His	p.Q107H	ENST00000369458	NM_024626.3	107	caA/caC																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280669	41280669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1012	365	524	0	ENST00000349496.5:c.2182G>A	p.Ala728Thr	p.A728T	ENST00000349496	NM_001904.3	728	Gcc/Acc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687346	117687346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1069	396	513	0	ENST00000368508.3:c.2705G>A	p.Arg902Lys	p.R902K	ENST00000368508	NM_002944.2	902	aGg/aAg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563107	21563107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1300	276	383	0	ENST00000382592.4:c.812G>A	p.Arg271His	p.R271H	ENST00000382592	NM_014572.2	271	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575663	48575663	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	27	364	0	ENST00000342988.3:c.425-2A>G		p.X142_splice	ENST00000342988	NM_005359.5	142																																																																															
APC	324	MSKCC	GRCh37	5	112175548	112175548	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002835-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	320	426	0	ENST00000257430.4:c.4260delC	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1419	agC/ag																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0002868-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			523	24	571	1	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46532696	46532696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			751	71	380	0	ENST00000262741.5:c.382C>G	p.Leu128Val	p.L128V	ENST00000262741	NM_003629.3	128	Ctg/Gtg																																																																														
FH	2271	MSKCC	GRCh37	1	241682971	241682971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	68	276	0	ENST00000366560.3:c.52C>T	p.Pro18Ser	p.P18S	ENST00000366560	NM_000143.3	18	Cca/Tca																																																																														
TP63	8626	MSKCC	GRCh37	3	189586425	189586425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	43	203	0	ENST00000264731.3:c.1049G>C	p.Arg350Thr	p.R350T	ENST00000264731	NM_003722.4	350	aGa/aCa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38942417	38942417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			767	73	309	0	ENST00000357387.3:c.5116G>A	p.Ala1706Thr	p.A1706T	ENST00000357387	NM_152756.3	1706	Gct/Act																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557414	21557414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			772	42	457	0	ENST00000382592.4:c.2431G>A	p.Gly811Ser	p.G811S	ENST00000382592	NM_014572.2	811	Ggc/Agc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103789	47103789	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			682	131	554	0	ENST00000409792.3:c.6157del	p.Ala2053ProfsTer94	p.A2053Pfs*94	ENST00000409792	NM_014159.6	2053	Gcc/cc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002881-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	70	329	0	ENST00000397062.3:c.72G>C	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgC																																																																														
RASA1	5921	MSKCC	GRCh37	5	86637132	86637132	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002881-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	59	267	0	ENST00000274376.6:c.1043G>C	p.Gly348Ala	p.G348A	ENST00000274376	NM_002890.2	348	gGa/gCa																																																																														
TET1	80312	MSKCC	GRCh37	10	70333105	70333105	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002881-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	137	502	0	ENST00000373644.4:c.1010C>G	p.Ala337Gly	p.A337G	ENST00000373644	NM_030625.2	337	gCg/gGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49441780	49441780	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002881-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	162	440	0	ENST00000301067.7:c.4204C>T	p.Gln1402Ter	p.Q1402*	ENST00000301067	NM_003482.3	1402	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002912-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	8	446	0	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721214	176721214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002912-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	50	285	0	ENST00000439151.2:c.6845C>A	p.Pro2282His	p.P2282H	ENST00000439151	NM_022455.4	2282	cCt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			89	173	478	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																														
RB1	5925	MSKCC	GRCh37	13	48955535	48955535	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	232	464	0	ENST00000267163.4:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000267163	NM_000321.2	551	Gaa/Taa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118502	17118502	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			44	93	353	0	ENST00000285071.4:c.1429C>T	p.Arg477Ter	p.R477*	ENST00000285071	NM_144997.5	477	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70352297	70352297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	34	604	0	ENST00000374080.3:c.4324C>T	p.His1442Tyr	p.H1442Y	ENST00000374080		1442	Cat/Tat																																																																														
ATRX	546	MSKCC	GRCh37	X	76953113	76953113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	328	594	3	ENST00000373344.5:c.200C>A	p.Ser67Tyr	p.S67Y	ENST00000373344	NM_000489.3	67	tCt/tAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			751	56	535	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	45	380	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	120	496	2	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																														
BCL6	604	MSKCC	GRCh37	3	187442833	187442833	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	43	378	0	ENST00000232014.4:c.1873A>T	p.Thr625Ser	p.T625S	ENST00000232014	NM_001130845.1	625	Act/Tct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628055	187628055	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			730	74	600	0	ENST00000441802.2:c.2927T>C	p.Val976Ala	p.V976A	ENST00000441802	NM_005245.3	976	gTg/gCg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132839	152132839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	48	382	0	ENST00000262189.6:c.33G>T	p.Gln11His	p.Q11H	ENST00000262189	NM_170606.2	11	caG/caT																																																																														
FLT3	2322	MSKCC	GRCh37	13	28602355	28602355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			749	42	599	2	ENST00000241453.7:c.2013C>A	p.His671Gln	p.H671Q	ENST00000241453	NM_004119.2	671	caC/caA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577595	7577595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	58	350	0	ENST00000269305.4:c.686G>A	p.Cys229Tyr	p.C229Y	ENST00000269305	NM_001126112.2	229	tGt/tAt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63537649	63537649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			756	50	551	0	ENST00000307078.5:c.983G>T	p.Gly328Val	p.G328V	ENST00000307078	NM_004655.3	328	gGc/gTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385223	41385223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	117	525	0	ENST00000373198.4:c.738G>T	p.Arg246Ser	p.R246S	ENST00000373198	NM_133170.3	246	agG/agT																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811611	102811611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			847	101	840	0	ENST00000307046.8:c.573del	p.Gly194GlufsTer8	p.G194Efs*8	ENST00000307046	NM_001111285.1	191	ggC/gg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	233	504	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	290	369	1	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
INSRR	3645	MSKCC	GRCh37	1	156811916	156811916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	191	593	0	ENST00000368195.3:c.3385G>A	p.Val1129Ile	p.V1129I	ENST00000368195	NM_014215.2	1129	Gtc/Atc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932747	49932747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	277	877	0	ENST00000296474.3:c.3124G>A	p.Asp1042Asn	p.D1042N	ENST00000296474	NM_002447.2	1042	Gat/Aat																																																																														
TET2	54790	MSKCC	GRCh37	4	106157893	106157893	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	149	485	0	ENST00000380013.4:c.2794G>C	p.Asp932His	p.D932H	ENST00000380013	NM_001127208.2	932	Gac/Cac																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753942	57753942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	237	507	0	ENST00000274289.3:c.682G>A	p.Ala228Thr	p.A228T	ENST00000274289	NM_006622.3	228	Gcc/Acc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562442	176562442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	672	530	0	ENST00000439151.2:c.338G>A	p.Cys113Tyr	p.C113Y	ENST00000439151	NM_022455.4	113	tGc/tAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180051032	180051032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	134	436	0	ENST00000261937.6:c.1451C>A	p.Pro484Gln	p.P484Q	ENST00000261937	NM_182925.4	484	cCa/cAa																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858315	27858315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1612	103	1125	0	ENST00000359303.2:c.256C>G	p.Gln86Glu	p.Q86E	ENST00000359303	NM_003535.2	86	Cag/Gag																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912174	29912174	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	103	133	0	ENST00000376809.5:c.895G>T	p.Glu299Ter	p.E299*	ENST00000376809	NM_002116.7	299	Gag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680887	30680887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	590	838	0	ENST00000376406.3:c.832G>T	p.Ala278Ser	p.A278S	ENST00000376406	NM_014641.2	278	Gca/Tca																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265487	152265487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	273	363	1	ENST00000206249.3:c.940C>A	p.Gln314Lys	p.Q314K	ENST00000206249	NM_000125.3	314	Cag/Aag																																																																														
AKT2	208	MSKCC	GRCh37	19	40762944	40762944	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	252	384	0	ENST00000392038.2:c.64T>C	p.Trp22Arg	p.W22R	ENST00000392038	NM_001626.4	22	Tgg/Cgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432347	49432347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	396	433	0	ENST00000301067.7:c.8792del	p.Pro2931HisfsTer12	p.P2931Hfs*12	ENST00000301067	NM_003482.3	2931	cCa/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	172	328	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630000	187630000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	63	236	0	ENST00000441802.2:c.982C>A	p.His328Asn	p.H328N	ENST00000441802	NM_005245.3	328	Cat/Aat																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518715	176518715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	55	201	0	ENST00000292408.4:c.633G>A	p.Met211Ile	p.M211I	ENST00000292408	NM_213647.1	211	atG/atA																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056997	180056997	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	48	271	0	ENST00000261937.6:c.622A>G	p.Thr208Ala	p.T208A	ENST00000261937	NM_182925.4	208	Acc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	58	211	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0003102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	26	319	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			16	29	132	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			14	37	90	0	ENST00000324856.7:c.413C>A	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066611	94066611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	35	494	0	ENST00000369303.4:c.1148G>T	p.Gly383Val	p.G383V	ENST00000369303	NM_004440.3	383	gGg/gTg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112919996	112919996	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	25	198	0	ENST00000351677.2:c.1211C>G	p.Ser404Ter	p.S404*	ENST00000351677	NM_002834.3	404	tCa/tGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0003106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	11	126	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974767	21974771	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGG	CGCGG	-			P-0003106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	24	155	0	ENST00000304494.5:c.56_60del	p.Ala19GlyfsTer23	p.A19Gfs*23	ENST00000304494	NM_000077.4	19	gCCGCG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974767	21974771	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGG	CGCGG	-			P-0003106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	24	155	0	ENST00000304494.5:c.56_60del	p.Ala19GlyfsTer23	p.A19Gfs*23	ENST00000304494	NM_000077.4	19	gCCGCG/g																																																																														
ALK	238	MSKCC	GRCh37	2	29519902	29519902	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200364883		P-0003127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	56	243	0	ENST00000389048.3:c.1669C>G	p.Arg557Gly	p.R557G	ENST00000389048	NM_004304.4	557	Cgt/Ggt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86667998	86667998	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	52	251	0	ENST00000274376.6:c.1762A>T	p.Lys588Ter	p.K588*	ENST00000274376	NM_002890.2	588	Aaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003135-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			428	51	393	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
MED12	9968	MSKCC	GRCh37	X	70355083	70355083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003135-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			372	53	377	0	ENST00000374080.3:c.5005G>A	p.Asp1669Asn	p.D1669N	ENST00000374080		1669	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7576910	7576910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	124	204	0	ENST00000269305.4:c.936delC	p.Ser313AlafsTer32	p.S313Afs*32	ENST00000269305	NM_001126112.2	312	acC/ac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720805	89720808	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0003376-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			36	56	116	0	ENST00000371953.3:c.956_959delCTTT	p.Thr319LysfsTer24	p.T319Kfs*24	ENST00000371953	NM_000314.4	319	aCTTTa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003376-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			31	61	367	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128018908	128018908	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003376-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			65	31	334	0	ENST00000285398.2:c.1960G>C	p.Glu654Gln	p.E654Q	ENST00000285398	NM_000122.1	654	Gag/Cag																																																																														
NBN	4683	MSKCC	GRCh37	8	90995013	90995013	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003376-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			219	74	308	0	ENST00000265433.3:c.108A>C	p.Glu36Asp	p.E36D	ENST00000265433	NM_002485.4	36	gaA/gaC																																																																														
NF1	4763	MSKCC	GRCh37	17	29557393	29557393	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003376-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			27	24	221	0	ENST00000358273.4:c.3106A>T	p.Lys1036Ter	p.K1036*	ENST00000358273	NM_001042492.2	1036	Aaa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	30	422	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	22	303	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52597493	52597493	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	15	296	0	ENST00000394830.3:c.3817C>T	p.Gln1273Ter	p.Q1273*	ENST00000394830	NM_018313.4	1273	Cag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044840	47044840	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0003425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	18	240	0	ENST00000329236.7:c.1933-1G>T		p.X645_splice	ENST00000329236	NM_001204466.1	645																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-			P-0003425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	124	281	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003455-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			435	21	392	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449595	149449595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003455-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			373	27	457	0	ENST00000286301.3:c.1351G>A	p.Asp451Asn	p.D451N	ENST00000286301	NM_005211.3	451	Gat/Aat																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444281	50444281	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003455-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			248	20	189	0	ENST00000331340.3:c.211T>C	p.Cys71Arg	p.C71R	ENST00000331340	NM_006060.4	71	Tgt/Cgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603042	48603042	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003455-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			238	17	205	0	ENST00000342988.3:c.1343del	p.Gln448ArgfsTer28	p.Q448Rfs*28	ENST00000342988	NM_005359.5	448	cAg/cg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0003461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			240	70	360	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0003461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			191	1116	990	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370709	55370709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			178	43	164	0	ENST00000297316.4:c.11C>T	p.Pro4Leu	p.P4L	ENST00000297316	NM_022454.3	4	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			96	125	370	0	ENST00000269305.4:c.700T>A	p.Tyr234Asn	p.Y234N	ENST00000269305	NM_001126112.2	234	Tac/Aac																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004992	16004992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			90	178	422	0	ENST00000268712.3:c.2262G>T	p.Glu754Asp	p.E754D	ENST00000268712	NM_006311.3	754	gaG/gaT																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131282	17131282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			246	94	658	0	ENST00000285071.4:c.170G>A	p.Arg57Gln	p.R57Q	ENST00000285071	NM_144997.5	57	cGg/cAg																																																																														
RARA	5914	MSKCC	GRCh37	17	38510606	38510606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			227	547	680	1	ENST00000254066.5:c.860C>T	p.Ser287Leu	p.S287L	ENST00000254066	NM_000964.3	287	tCg/tTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55589773	55589773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003463-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			288	48	276	0	ENST00000288135.5:c.1255G>A	p.Asp419Asn	p.D419N	ENST00000288135	NM_000222.2	419	Gac/Aac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681757	30681757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003463-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			248	163	302	0	ENST00000376406.3:c.340C>T	p.Arg114Cys	p.R114C	ENST00000376406	NM_014641.2	114	Cgt/Tgt																																																																														
HGF	3082	MSKCC	GRCh37	7	81372683	81372683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003463-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			377	115	322	0	ENST00000222390.5:c.851C>T	p.Ala284Val	p.A284V	ENST00000222390	NM_000601.4	284	gCa/gTa																																																																														
MET	4233	MSKCC	GRCh37	7	116340245	116340245	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003463-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			290	24	250	0	ENST00000397752.3:c.1107T>A	p.Tyr369Ter	p.Y369*	ENST00000397752	NM_000245.2	369	taT/taA																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11984849	11984849	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0003481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	22	192	0	ENST00000353533.5:c.393+2T>A		p.X131_splice	ENST00000353533	NM_003010.3	131																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115905	8115912	+	frameshift_variant	Frame_Shift_Del	DEL	CACGCCCA	CACGCCCA	-			P-0003481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	138	307	0	ENST00000346208.3:c.1252_1259del	p.Thr418AlafsTer86	p.T418Afs*86	ENST00000346208		417	acCACGCCCAcg/accg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577361	64577373	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCAGGCGGGT	CCGCCAGGCGGGT	-			P-0003481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	50	307	0	ENST00000337652.1:c.209_221del	p.Asp70AlafsTer45	p.D70Afs*45	ENST00000337652	NM_130803.2	70	gACCCGCCTGGCGGc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	349	328	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MDM4	4194	MSKCC	GRCh37	1	204515988	204515988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	83	309	0	ENST00000367182.3:c.886G>A	p.Val296Ile	p.V296I	ENST00000367182	NM_001278516.1	296	Gta/Ata																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086076	16086076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	190	318	1	ENST00000281043.3:c.1252G>A	p.Ala418Thr	p.A418T	ENST00000281043	NM_005378.4	418	Gcc/Acc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505524	25505524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	243	366	0	ENST00000264709.3:c.234G>T	p.Met78Ile	p.M78I	ENST00000264709	NM_175629.2	78	atG/atT																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751390	57751390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	151	263	0	ENST00000274289.3:c.1601A>T	p.His534Leu	p.H534L	ENST00000274289	NM_006622.3	534	cAc/cTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956610	93956610	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	232	506	1	ENST00000369303.4:c.2626G>T	p.Glu876Ter	p.E876*	ENST00000369303	NM_004440.3	876	Gag/Tag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729688	41729688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	310	464	0	ENST00000242208.4:c.841G>A	p.Ala281Thr	p.A281T	ENST00000242208	NM_002192.2	281	Gca/Aca																																																																														
MYC	4609	MSKCC	GRCh37	8	128750701	128750701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	275	342	0	ENST00000377970.2:c.238C>T	p.Arg80Cys	p.R80C	ENST00000377970	NM_002467.4	80	Cgc/Tgc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072573	5072573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	254	243	0	ENST00000381652.3:c.1723G>T	p.Glu575Ter	p.E575*	ENST00000381652	NM_004972.3	575	Gaa/Taa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741925	17741925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	50	36	0	ENST00000250003.3:c.596C>A	p.Ala199Glu	p.A199E	ENST00000250003	NM_002478.4	199	gCg/gAg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28897004	28897004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	239	334	1	ENST00000282397.4:c.2876G>A	p.Ser959Asn	p.S959N	ENST00000282397	NM_002019.4	959	aGc/aAc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	364	326	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576214	88576214	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	171	192	0	ENST00000360948.2:c.1459G>C	p.Gly487Arg	p.G487R	ENST00000360948	NM_001012338.2	487	Ggc/Cgc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610208	10610208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	239	360	0	ENST00000171111.5:c.502G>T	p.Val168Phe	p.V168F	ENST00000171111	NM_203500.1	168	Gtc/Ttc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459458	50459458	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	105	240	0	ENST00000331340.3:c.748del	p.Ala250GlnfsTer7	p.A250Qfs*7	ENST00000331340	NM_006060.4	249	atG/at																																																																														
STK11	6794	MSKCC	GRCh37	19	1220371	1220372	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0003505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	173	270	0	ENST00000326873.7:c.465-1_465delinsTT		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52712615	52712615	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0003590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	174	247	0	ENST00000394830.3:c.139-2A>G		p.X47_splice	ENST00000394830	NM_018313.4	47																																																																															
TET2	54790	MSKCC	GRCh37	4	106162520	106162520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	147	259	0	ENST00000380013.4:c.3434G>T	p.Gly1145Val	p.G1145V	ENST00000380013	NM_001127208.2	1145	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	510	213	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	33	266	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228613026	228613026	+	start_lost	Translation_Start_Site	SNP	T	T	C	rs146533230		P-0003627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	35	482	0	ENST00000366696.1:c.1A>G	p.Met1?	p.M1?	ENST00000366696	NM_003493.2	1	Atg/Gtg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136270	2136270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	19	408	0	ENST00000219476.3:c.4739G>A	p.Arg1580Gln	p.R1580Q	ENST00000219476	NM_000548.3	1580	cGg/cAg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			184	103	562	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																														
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			161	62	605	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150547	157150547	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			132	59	231	0	ENST00000346085.5:c.1729C>T	p.Gln577Ter	p.Q577*	ENST00000346085	NM_020732.3	577	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692961	89692961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			73	70	289	0	ENST00000371953.3:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000371953	NM_000314.4	149	Caa/Taa																																																																														
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			62	67	613	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7982779	7982779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			106	46	459	1	ENST00000319144.4:c.1006C>A	p.His336Asn	p.H336N	ENST00000319144	NM_001139.2	336	Cac/Aac																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24158967	24158967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			137	44	407	0	ENST00000263121.7:c.639G>A	p.Met213Ile	p.M213I	ENST00000263121	NM_003073.3	213	atG/atA																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176085811	176085811	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003656-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			299	71	413	0	ENST00000367669.3:c.975del	p.Ile326LeufsTer28	p.I326Lfs*28	ENST00000367669	NM_022457.5	325	atT/at																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223621	55223621	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139429793		P-0003702-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			75	11	187	0	ENST00000275493.2:c.988G>A	p.Glu330Lys	p.E330K	ENST00000275493	NM_005228.3	330	Gaa/Aaa																																																																														
EED	8726	MSKCC	GRCh37	11	85956352	85956352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003702-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			146	10	155	0	ENST00000263360.6:c.81G>C	p.Glu27Asp	p.E27D	ENST00000263360	NM_003797.3	27	gaG/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7573988	7573988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003702-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			122	43	407	1	ENST00000269305.4:c.1039G>C	p.Ala347Pro	p.A347P	ENST00000269305	NM_001126112.2	347	Gcc/Ccc																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123505212	123505212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003702-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			159	17	281	0	ENST00000371139.4:c.358G>C	p.Asp120His	p.D120H	ENST00000371139	NM_001114937.2	120	Gat/Cat																																																																														
INSR	3643	MSKCC	GRCh37	19	7152900	7152900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003702-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			179	11	252	0	ENST00000302850.5:c.2068G>A	p.Glu690Lys	p.E690K	ENST00000302850	NM_000208.2	690	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980832	40980832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	29	296	0	ENST00000373198.4:c.1654C>T	p.Leu552Phe	p.L552F	ENST00000373198	NM_133170.3	552	Ctc/Ttc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539512	187539512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	42	355	0	ENST00000441802.2:c.8228C>T	p.Pro2743Leu	p.P2743L	ENST00000441802	NM_005245.3	2743	cCa/cTa																																																																														
ABL1	25	MSKCC	GRCh37	9	133761036	133761036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1456042173		P-0003743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	69	376	1	ENST00000318560.5:c.3359C>T	p.Ser1120Leu	p.S1120L	ENST00000318560	NM_005157.4	1120	tCg/tTg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	34	383	0	ENST00000346208.3:c.1220C>T	p.Ser407Leu	p.S407L	ENST00000346208		407	tCg/tTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402169	402169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	80	586	0	ENST00000399788.2:c.4622G>C	p.Gly1541Ala	p.G1541A	ENST00000399788	NM_001042603.1	1541	gGt/gCt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716431	18716431	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	36	291	0	ENST00000266497.5:c.3778G>A	p.Glu1260Lys	p.E1260K	ENST00000266497		1260	Gag/Aag																																																																														
RAB35	11021	MSKCC	GRCh37	12	120535069	120535069	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	71	549	0	ENST00000229340.5:c.586C>T	p.Arg196Ter	p.R196*	ENST00000229340	NM_006861.6	196	Cga/Tga																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572483	95572483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	48	255	0	ENST00000343455.3:c.2882C>T	p.Pro961Leu	p.P961L	ENST00000343455	NM_177438.2	961	cCt/cTt																																																																														
AR	367	MSKCC	GRCh37	X	66765655	66765655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	47	243	0	ENST00000374690.3:c.667G>A	p.Asp223Asn	p.D223N	ENST00000374690	NM_000044.3	223	Gac/Aac																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205160	128205160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003745-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			875	90	632	0	ENST00000341105.2:c.281G>A	p.Gly94Asp	p.G94D	ENST00000341105	NM_032638.4	94	gGt/gAt																																																																														
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003918-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1043	122	551	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																														
ALK	238	MSKCC	GRCh37	2	29443576	29443576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003918-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	45	270	0	ENST00000389048.3:c.3641G>A	p.Arg1214His	p.R1214H	ENST00000389048	NM_004304.4	1214	cGc/cAc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246666	46246666	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003918-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	82	84	0	ENST00000334344.6:c.4760A>G	p.Asn1587Ser	p.N1587S	ENST00000334344	NM_152641.2	1587	aAt/aGt																																																																														
CDH1	999	MSKCC	GRCh37	16	68846130	68846131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003918-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			798	110	544	0	ENST00000261769.5:c.1102dup	p.Thr368AsnfsTer4	p.T368Nfs*4	ENST00000261769	NM_004360.3	367	-/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	301	248	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	359	479	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851325	156851325	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201891311		P-0003933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	161	296	2	ENST00000524377.1:c.2282G>A	p.Arg761Gln	p.R761Q	ENST00000524377	NM_002529.3	761	cGg/cAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945694	38945694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			865	413	370	0	ENST00000357387.3:c.4532G>A	p.Gly1511Glu	p.G1511E	ENST00000357387	NM_152756.3	1511	gGa/gAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11288936	11288936	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	177	233	0	ENST00000361445.4:c.2819A>C	p.Asn940Thr	p.N940T	ENST00000361445	NM_004958.3	940	aAc/aCc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731154	162731154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	418	467	0	ENST00000367921.3:c.1009C>A	p.Pro337Thr	p.P337T	ENST00000367921	NM_006182.2	337	Cct/Act																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170915	99170915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	232	345	0	ENST00000074304.5:c.1544G>T	p.Arg515Leu	p.R515L	ENST00000074304	NM_001134224.1	515	cGa/cTa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205868	128205868	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	42	184	0	ENST00000341105.2:c.7G>C	p.Val3Leu	p.V3L	ENST00000341105	NM_032638.4	3	Gtg/Ctg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			610	217	143	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FIP1L1	81608	MSKCC	GRCh37	4	54280853	54280853	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	387	290	0	ENST00000337488.6:c.887A>T	p.Gln296Leu	p.Q296L	ENST00000337488	NM_030917.3	296	cAg/cTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55592128	55592128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	415	379	0	ENST00000288135.5:c.1452G>T	p.Lys484Asn	p.K484N	ENST00000288135	NM_000222.2	484	aaG/aaT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508364	106508364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	92	114	0	ENST00000359195.3:c.358G>T	p.Asp120Tyr	p.D120Y	ENST00000359195	NM_002649.2	120	Gac/Tac																																																																														
SYK	6850	MSKCC	GRCh37	9	93637031	93637031	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	350	334	0	ENST00000375746.1:c.1081A>T	p.Lys361Ter	p.K361*	ENST00000375746	NM_001174167.1	361	Aag/Tag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	463306	463306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	459	467	0	ENST00000399788.2:c.965G>T	p.Cys322Phe	p.C322F	ENST00000399788	NM_001042603.1	322	tGt/tTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46254668	46254668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			674	467	411	0	ENST00000334344.6:c.4858C>T	p.Gln1620Ter	p.Q1620*	ENST00000334344	NM_152641.2	1620	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	49039190	49039190	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			115	474	294	0	ENST00000267163.4:c.2268T>G	p.Tyr756Ter	p.Y756*	ENST00000267163	NM_000321.2	756	taT/taG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	203	281	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019385	31019385	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs74414530		P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	313	386	1	ENST00000375687.4:c.883-1G>A		p.X295_splice	ENST00000375687	NM_015338.5	295																																																																															
ARAF	369	MSKCC	GRCh37	X	47429027	47429027	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	207	434	2	ENST00000377045.4:c.1390G>T	p.Glu464Ter	p.E464*	ENST00000377045	NM_001654.4	464	Gag/Tag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222362	53222362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	214	569	0	ENST00000375401.3:c.4470G>T	p.Glu1490Asp	p.E1490D	ENST00000375401	NM_004187.3	1490	gaG/gaT																																																																														
APC	324	MSKCC	GRCh37	5	112175315	112175319	+	frameshift_variant	Frame_Shift_Del	DEL	TTATC	TTATC	-			P-0003943-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	196	262	0	ENST00000257430.4:c.4026_4030del	p.Leu1342PhefsTer10	p.L1342Ffs*10	ENST00000257430	NM_000038.5	1342	TTATCt/t																																																																														
NF1	4763	MSKCC	GRCh37	17	29657442	29657442	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003947-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			636	290	610	0	ENST00000358273.4:c.5738A>T	p.Lys1913Met	p.K1913M	ENST00000358273	NM_001042492.2	1913	aAg/aTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881414	37881414	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003947-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	137	295	2	ENST00000269571.5:c.2606T>G	p.Leu869Arg	p.L869R	ENST00000269571		869	cTg/cGg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061101	38061135	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGC	GTCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGC	-			P-0003947-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	19	63	0	ENST00000250448.2:c.854_888del	p.Ser285ThrfsTer6	p.S285Tfs*6	ENST00000250448	NM_004496.3	285	aGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGAC/a																																																																														
CDH1	999	MSKCC	GRCh37	16	68862143	68862144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003947-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	230	482	0	ENST00000261769.5:c.2232dup	p.Glu745ArgfsTer3	p.E745Rfs*3	ENST00000261769	NM_004360.3	744	cca/ccAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	26	486	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	144	502	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873888	151873888	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			836	82	802	0	ENST00000262189.6:c.8650C>T	p.Arg2884Ter	p.R2884*	ENST00000262189	NM_170606.2	2884	Cga/Tga																																																																														
CBFB	865	MSKCC	GRCh37	16	67100613	67100613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	371	846	2	ENST00000412916.2:c.311A>G	p.Asn104Ser	p.N104S	ENST00000412916		104	aAt/aGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891104	151891104	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			802	54	528	0	ENST00000262189.6:c.4650del	p.His1551ThrfsTer12	p.H1551Tfs*12	ENST00000262189	NM_170606.2	1550	atA/at																																																																														
CDH1	999	MSKCC	GRCh37	16	68842343	68842344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	333	983	0	ENST00000261769.5:c.406dup	p.Gln136ProfsTer32	p.Q136Pfs*32	ENST00000261769	NM_004360.3	135	atc/atCc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	43	341	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860197	151860197	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	131	516	0	ENST00000262189.6:c.10465C>T	p.Gln3489Ter	p.Q3489*	ENST00000262189	NM_170606.2	3489	Caa/Taa																																																																														
CDH1	999	MSKCC	GRCh37	16	68842351	68842351	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	70	561	0	ENST00000261769.5:c.412G>T	p.Glu138Ter	p.E138*	ENST00000261769	NM_004360.3	138	Gaa/Taa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003961-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	231	472	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579345	7579346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	81	408	0	ENST00000269305.4:c.341dup	p.Leu114PhefsTer35	p.L114Ffs*35	ENST00000269305	NM_001126112.2	114	ttg/ttTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003978-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			25	360	311	6	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401426	139401426	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0003978-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			12	357	172	2	ENST00000277541.6:c.3644-1G>A		p.X1215_splice	ENST00000277541	NM_017617.3	1215																																																																															
RB1	5925	MSKCC	GRCh37	13	48955502	48955502	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003978-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			34	539	408	6	ENST00000267163.4:c.1619del	p.Gly540AlafsTer3	p.G540Afs*3	ENST00000267163	NM_000321.2	540	Ggc/gc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	49	170	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0003982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	80	446	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560464	95560464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	25	102	0	ENST00000343455.3:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000343455	NM_177438.2	1709	Gat/Aat																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591282	67591282	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	25	156	0	ENST00000274335.5:c.1780T>G	p.Leu594Val	p.L594V	ENST00000274335		594	Ttg/Gtg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054569	5054569	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	27	155	0	ENST00000381652.3:c.621G>C	p.Lys207Asn	p.K207N	ENST00000381652	NM_004972.3	207	aaG/aaC																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37856540	37856540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	86	259	0	ENST00000269571.5:c.49C>T	p.Pro17Ser	p.P17S	ENST00000269571		17	Ccc/Tcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105611	27105612	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0003982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	34	307	0	ENST00000324856.7:c.5225_5226del	p.Arg1742AsnfsTer13	p.R1742Nfs*13	ENST00000324856	NM_006015.4	1741	cAG/c																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0003983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	11	69	0	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			633	232	471	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
AKT3	10000	MSKCC	GRCh37	1	243858992	243858992	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			493	110	549	0	ENST00000263826.5:c.73A>G	p.Arg25Gly	p.R25G	ENST00000263826	NM_005465.4	25	Aga/Gga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278100	41278100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1228	191	812	0	ENST00000349496.5:c.1976T>C	p.Leu659Ser	p.L659S	ENST00000349496	NM_001904.3	659	tTg/tCg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259526	89259526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			817	127	614	0	ENST00000336596.2:c.670G>T	p.Val224Leu	p.V224L	ENST00000336596	NM_005233.5	224	Gtg/Ttg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258979	153258979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	52	721	0	ENST00000281708.4:c.836A>G	p.Asp279Gly	p.D279G	ENST00000281708	NM_033632.3	279	gAc/gGc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38959365	38959365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			779	68	669	0	ENST00000357387.3:c.2110A>G	p.Ser704Gly	p.S704G	ENST00000357387	NM_152756.3	704	Agc/Ggc																																																																														
PARK2	5071	MSKCC	GRCh37	6	161781181	161781181	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1133	82	815	0	ENST00000366898.1:c.1224A>C	p.Lys408Asn	p.K408N	ENST00000366898	NM_004562.2	408	aaA/aaC																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080600	5080600	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1239	90	819	0	ENST00000381652.3:c.2351T>G	p.Ile784Arg	p.I784R	ENST00000381652	NM_004972.3	784	aTa/aGa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434428	110434428	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1096	156	692	0	ENST00000375856.3:c.3973T>G	p.Phe1325Val	p.F1325V	ENST00000375856	NM_003749.2	1325	Ttc/Gtc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944487	40944487	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1166	79	770	0	ENST00000373198.4:c.2015A>G	p.Asn672Ser	p.N672S	ENST00000373198	NM_133170.3	672	aAc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	422	430	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	247	463	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	216	278	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31369176	31369176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	230	399	0	ENST00000328111.2:c.160C>T	p.Arg54Ter	p.R54*	ENST00000328111	NM_006892.3	54	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	134	138	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	263	436	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675646	30675646	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	215	678	0	ENST00000376406.3:c.2710C>G	p.Gln904Glu	p.Q904E	ENST00000376406	NM_014641.2	904	Caa/Gaa																																																																														
PAX5	5079	MSKCC	GRCh37	9	36840622	36840622	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	68	284	0	ENST00000358127.4:c.1111T>G	p.Tyr371Asp	p.Y371D	ENST00000358127	NM_001280556.1	371	Tat/Gat																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5245795	5245795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	120	261	0	ENST00000357368.4:c.980C>T	p.Thr327Met	p.T327M	ENST00000357368	NM_002850.3	327	aCg/aTg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164616	36164616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	157	291	0	ENST00000300305.3:c.1259G>A	p.Gly420Asp	p.G420D	ENST00000300305		420	gGc/gAc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44514857	44514857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	300	408	0	ENST00000291552.4:c.390G>C	p.Leu130Phe	p.L130F	ENST00000291552	NM_006758.2	130	ttG/ttC																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652398	48652398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004018-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	200	277	0	ENST00000376670.3:c.1069C>T	p.Pro357Ser	p.P357S	ENST00000376670	NM_002049.3	357	Ccc/Tcc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125034	46125035	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0004031-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	131	624	0	ENST00000334344.6:c.221_222del	p.Glu74GlyfsTer10	p.E74Gfs*10	ENST00000334344	NM_152641.2	74	gAA/g																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741502	145741502	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004031-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	90	617	0	ENST00000428558.2:c.1001A>T	p.Glu334Val	p.E334V	ENST00000428558	NM_004260.3	334	gAg/gTg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115714	8115717	+	frameshift_variant	Frame_Shift_Del	DEL	CTGA	CTGA	-			P-0004031-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	104	570	0	ENST00000346208.3:c.1062_1065del	p.Thr355Ter	p.T355*	ENST00000346208		354	CTGAct/ct																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230746	46230746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004031-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	99	525	0	ENST00000334344.6:c.996del	p.Asp333ThrfsTer3	p.D333Tfs*3	ENST00000334344	NM_152641.2	332	cTt/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0004050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	71	344	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163971	47163971	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs115859828		P-0004050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	144	324	0	ENST00000409792.3:c.2155A>G	p.Asn719Asp	p.N719D	ENST00000409792	NM_014159.6	719	Aat/Gat																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239915	53239915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			90	173	267	0	ENST00000375401.3:c.1526C>T	p.Ser509Leu	p.S509L	ENST00000375401	NM_004187.3	509	tCa/tTa																																																																														
MITF	4286	MSKCC	GRCh37	3	70014379	70014379	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			137	36	158	0	ENST00000352241.4:c.1543G>T	p.Glu515Ter	p.E515*	ENST00000352241	NM_198159.2	515	Gag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259064	89259064	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	40	238	0	ENST00000336596.2:c.208G>C	p.Val70Leu	p.V70L	ENST00000336596	NM_005233.5	70	Gtg/Ctg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160718	56160718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	102	395	0	ENST00000399503.3:c.992G>T	p.Gly331Val	p.G331V	ENST00000399503	NM_005921.1	331	gGa/gTa																																																																														
PAX5	5079	MSKCC	GRCh37	9	36846853	36846853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	65	336	1	ENST00000358127.4:c.1086C>A	p.Asn362Lys	p.N362K	ENST00000358127	NM_001280556.1	362	aaC/aaA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953623	32953623	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	52	211	0	ENST00000380152.3:c.8924T>C	p.Val2975Ala	p.V2975A	ENST00000380152		2975	gTa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	161	256	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918491	44918491	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	240	259	0	ENST00000377967.4:c.975-1G>A		p.X325_splice	ENST00000377967	NM_021140.2	325																																																																															
ATRX	546	MSKCC	GRCh37	X	76937980	76937980	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	105	266	0	ENST00000373344.5:c.2768A>C	p.Lys923Thr	p.K923T	ENST00000373344	NM_000489.3	923	aAg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	98	224	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	249	288	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259476	89259476	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	91	315	0	ENST00000336596.2:c.620A>G	p.Lys207Arg	p.K207R	ENST00000336596	NM_005233.5	207	aAg/aGg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169272	32169272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	135	188	0	ENST00000375023.3:c.3761C>A	p.Ala1254Asp	p.A1254D	ENST00000375023	NM_004557.3	1254	gCc/gAc																																																																														
MET	4233	MSKCC	GRCh37	7	116411930	116411930	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	172	244	0	ENST00000397752.3:c.2915A>C	p.Asp972Ala	p.D972A	ENST00000397752	NM_000245.2	972	gAt/gCt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727454	66727454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	17	276	0	ENST00000307102.5:c.170A>C	p.Lys57Thr	p.K57T	ENST00000307102	NM_002755.3	57	aAg/aCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299062	15299062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	177	315	0	ENST00000263388.2:c.1476C>G	p.Ser492Arg	p.S492R	ENST00000263388	NM_000435.2	492	agC/agG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952149	178952150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCA			P-0004072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	118	182	0	ENST00000263967.3:c.3205_3206insTCAT	p.Ter1069PhefsTer5	p.*1069Ffs*5	ENST00000263967	NM_006218.2	1068	-/TTCA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	963	223	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	91	236	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	343507	343507	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	172	233	0	ENST00000262320.3:c.2167C>T	p.Arg723Ter	p.R723*	ENST00000262320	NM_003502.3	723	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	172	341	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																														
PARK2	5071	MSKCC	GRCh37	6	161771163	161771163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	62	250	2	ENST00000366898.1:c.1366G>A	p.Val456Ile	p.V456I	ENST00000366898	NM_004562.2	456	Gtc/Atc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879856	37879856	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	143	175	0	ENST00000269571.5:c.2151G>C	p.Glu717Asp	p.E717D	ENST00000269571		717	gaG/gaC																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245759	41245759	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004290-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			614	52	269	1	ENST00000357654.3:c.1789G>T	p.Glu597Ter	p.E597*	ENST00000357654	NM_007294.3	597	Gaa/Taa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200046	128200046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004290-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			920	92	283	1	ENST00000341105.2:c.1259G>A	p.Cys420Tyr	p.C420Y	ENST00000341105	NM_032638.4	420	tGc/tAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	98	368	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	139	365	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0004454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	132	470	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944944	31944944	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144139961		P-0004454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	79	228	0	ENST00000340398.3:c.157C>T	p.Arg53Cys	p.R53C	ENST00000340398	NM_001013699.2	53	Cgt/Tgt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271913	18271913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	99	223	0	ENST00000222254.8:c.516C>A	p.Asp172Glu	p.D172E	ENST00000222254	NM_005027.3	172	gaC/gaA																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492789	56492790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTCTGATAACAGCTTTCT			P-0004454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	114	370	0	ENST00000407977.2:c.149_150insAGAAAGCTGTTATCAGAGT	p.Ile51GlufsTer30	p.I51Efs*30	ENST00000407977		50	gtg/gtAGAAAGCTGTTATCAGAGTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004478-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			536	87	433	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ATM	472	MSKCC	GRCh37	11	108199836	108199836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004478-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			609	114	468	0	ENST00000278616.4:c.7178T>C	p.Phe2393Ser	p.F2393S	ENST00000278616	NM_000051.3	2393	tTt/tCt																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46531765	46531766	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TCTTTAG			P-0004478-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			837	48	654	0	ENST00000262741.5:c.581_582insCTAAAGA	p.Glu194AspfsTer2	p.E194Dfs*2	ENST00000262741	NM_003629.3	194	gag/gaCTAAAGAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			394	173	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			217	260	361	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469507	25469507	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			351	174	489	0	ENST00000264709.3:c.1261G>C	p.Gly421Arg	p.G421R	ENST00000264709	NM_175629.2	421	Ggc/Cgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			121	125	182	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61213514	61213514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			361	215	326	0	ENST00000301761.2:c.472C>A	p.Leu158Ile	p.L158I	ENST00000301761	NM_017841.2	158	Ctt/Att																																																																														
ATM	472	MSKCC	GRCh37	11	108143284	108143284	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			190	213	336	0	ENST00000278616.4:c.3103A>G	p.Ile1035Val	p.I1035V	ENST00000278616	NM_000051.3	1035	Ata/Gta																																																																														
ARID2	196528	MSKCC	GRCh37	12	46205217	46205217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			417	185	333	0	ENST00000334344.6:c.301G>A	p.Glu101Lys	p.E101K	ENST00000334344	NM_152641.2	101	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807359	3807359	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			361	192	341	0	ENST00000262367.5:c.3628A>G	p.Thr1210Ala	p.T1210A	ENST00000262367	NM_004380.2	1210	Act/Gct																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			146	174	310	0	ENST00000342988.3:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000342988	NM_005359.5	419	Ggg/Agg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53253974	53253974	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			446	291	533	0	ENST00000375401.3:c.98A>C	p.Lys33Thr	p.K33T	ENST00000375401	NM_004187.3	33	aAa/aCa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411818	63411818	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004716-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			533	254	624	0	ENST00000330258.3:c.1349del	p.Pro450LeufsTer5	p.P450Lfs*5	ENST00000330258	NM_152424.3	450	cCt/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	1114	262	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	119	283	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	66	333	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45796231	45796231	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	337	455	0	ENST00000372115.3:c.1435-2A>C		p.X479_splice	ENST00000372115	NM_001048171.1	479																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52613145	52613145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	83	433	0	ENST00000394830.3:c.3383A>G	p.Tyr1128Cys	p.Y1128C	ENST00000394830	NM_018313.4	1128	tAc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294142	1294142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	122	310	0	ENST00000310581.5:c.859G>T	p.Gly287Cys	p.G287C	ENST00000310581	NM_198253.2	287	Ggt/Tgt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138187	64138187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	153	307	0	ENST00000334205.4:c.2110G>A	p.Ala704Thr	p.A704T	ENST00000334205	NM_003942.2	704	Gcc/Acc																																																																														
ATM	472	MSKCC	GRCh37	11	108114790	108114790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	95	247	0	ENST00000278616.4:c.607G>A	p.Asp203Asn	p.D203N	ENST00000278616	NM_000051.3	203	Gac/Aac																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109852	115109852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	84	190	0	ENST00000257566.3:c.2026G>T	p.Ala676Ser	p.A676S	ENST00000257566	NM_016569.3	676	Gcc/Tcc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17949144	17949144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	100	446	0	ENST00000458235.1:c.1497G>T	p.Leu499Phe	p.L499F	ENST00000458235	NM_000215.3	499	ttG/ttT																																																																														
AKT2	208	MSKCC	GRCh37	19	40748538	40748538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	92	432	1	ENST00000392038.2:c.344C>T	p.Pro115Leu	p.P115L	ENST00000392038	NM_001626.4	115	cCa/cTa																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664761	138664761	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	20	20	0	ENST00000330315.3:c.804del	p.Gly269AlafsTer2	p.G269Afs*2	ENST00000330315	NM_023067.3	268	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105684	27105688	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAG	AGAAG	C			P-0004802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	248	334	0	ENST00000324856.7:c.5295_5299delinsC	p.Glu1765AspfsTer4	p.E1765Dfs*4	ENST00000324856	NM_006015.4	1765	gaAGAAGaa/gaCaa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004828-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			380	327	358	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431628	6431628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	41	279	0	ENST00000356142.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000356142	NM_018890.3	61	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	406	724	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	271	308	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851754	134851754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56396912		P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	139	515	3	ENST00000398015.3:c.1160C>T	p.Thr387Met	p.T387M	ENST00000398015	NM_004441.4	387	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	87	444	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959351	26959351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	87	321	0	ENST00000381527.3:c.518A>G	p.Asp173Gly	p.D173G	ENST00000381527	NM_001260.1	173	gAc/gGc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44515848	44515848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	144	629	1	ENST00000291552.4:c.205G>T	p.Val69Leu	p.V69L	ENST00000291552	NM_006758.2	69	Gtg/Ttg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913125	32913126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	142	825	1	ENST00000380152.3:c.4633_4634insG	p.Leu1545ArgfsTer3	p.L1545Rfs*3	ENST00000380152		1545	ctt/cGtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005057-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			357	57	398	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046364	128046364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005057-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			425	58	584	0	ENST00000285398.2:c.899A>G	p.Asp300Gly	p.D300G	ENST00000285398	NM_000122.1	300	gAt/gGt																																																																														
SYK	6850	MSKCC	GRCh37	9	93606432	93606452	+	inframe_deletion	In_Frame_Del	DEL	CCCCGCCGACCTCTGCCACTA	CCCCGCCGACCTCTGCCACTA	-			P-0005057-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			440	51	444	0	ENST00000375746.1:c.254_274del	p.Pro85_Tyr91del	p.P85_Y91del	ENST00000375746	NM_001174167.1	84	agCCCCGCCGACCTCTGCCACTAc/agc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641307	23641308	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0005057-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			394	74	508	0	ENST00000261584.4:c.2167_2168del	p.Met723ValfsTer21	p.M723Vfs*21	ENST00000261584	NM_024675.3	723	ATg/g																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045009	47045009	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	97	273	1	ENST00000329236.7:c.2101C>T	p.Gln701Ter	p.Q701*	ENST00000329236	NM_001204466.1	701	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577576	7577578	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0005137-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			200	439	499	0	ENST00000269305.4:c.703_705del	p.Asn235del	p.N235del	ENST00000269305	NM_001126112.2	235	AAC/-																																																																														
APC	324	MSKCC	GRCh37	5	112175211	112175212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005137-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			180	86	254	0	ENST00000257430.4:c.3924dup	p.Glu1309ArgfsTer6	p.E1309Rfs*6	ENST00000257430	NM_000038.5	1307	ata/atAa																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366982	40366982	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005137-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			141	208	471	0	ENST00000397332.2:c.215C>A	p.Ser72Ter	p.S72*	ENST00000397332	NM_001033082.2	72	tCg/tAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412464	63412464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005137-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			571	290	895	1	ENST00000330258.3:c.703C>T	p.Pro235Ser	p.P235S	ENST00000330258	NM_152424.3	235	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112173502	112173506	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CAAGG	CAAGG	-			P-0005137-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			247	102	408	0	ENST00000257430.4:c.2211_2215del	p.Tyr737Ter	p.Y737*	ENST00000257430	NM_000038.5	737	taCAAGGat/taat																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576761	67576762	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005137-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			70	91	164	0	ENST00000274335.5:c.845dup	p.Asn282LysfsTer3	p.N282Kfs*3	ENST00000274335		281	-/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0005152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	215	237	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9543627	9543627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	30	423	0	ENST00000353224.5:c.1527G>A	p.Met509Ile	p.M509I	ENST00000353224	NM_177990.2	509	atG/atA																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411072	63411072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	48	468	0	ENST00000330258.3:c.2095C>T	p.Arg699Cys	p.R699C	ENST00000330258	NM_152424.3	699	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	283	508	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
KDR	3791	MSKCC	GRCh37	4	55956221	55956221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	296	572	0	ENST00000263923.4:c.3094C>T	p.Arg1032Ter	p.R1032*	ENST00000263923	NM_002253.2	1032	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	310	689	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001463	150001463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			587	381	796	0	ENST00000253339.5:c.2141G>A	p.Gly714Glu	p.G714E	ENST00000253339		714	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112175756	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	195	389	0	ENST00000257430.4:c.4466del	p.Leu1489TyrfsTer18	p.L1489Yfs*18	ENST00000257430	NM_000038.5	1489	Tta/ta																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38991050	38991050	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0005164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	223	482	0	ENST00000357387.3:c.583+1G>T		p.X195_splice	ENST00000357387	NM_152756.3	195																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488319	157488319	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005164-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	86	406	0	ENST00000346085.5:c.3025G>A	p.Ala1009Thr	p.A1009T	ENST00000346085	NM_020732.3	1009	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005217-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			854	67	998	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061218	38061238	+	inframe_deletion	In_Frame_Del	DEL	GCCGTTCTCGAACATGTTGCC	GCCGTTCTCGAACATGTTGCC	-			P-0005217-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			862	111	621	0	ENST00000250448.2:c.751_771del	p.Gly251_Gly257del	p.G251_G257del	ENST00000250448	NM_004496.3	251	GGCAACATGTTCGAGAACGGC/-																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	137	641	7	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	71	635	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508805	106508805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	79	605	1	ENST00000359195.3:c.799G>A	p.Glu267Lys	p.E267K	ENST00000359195	NM_002649.2	267	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	29432664	29432664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	44	569	1	ENST00000389048.3:c.3824G>A	p.Arg1275Gln	p.R1275Q	ENST00000389048	NM_004304.4	1275	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	123	605	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466324	120466324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	50	524	0	ENST00000256646.2:c.4795G>T	p.Ala1599Ser	p.A1599S	ENST00000256646	NM_024408.3	1599	Gct/Tct																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858467	27858467	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113019637		P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	80	918	0	ENST00000359303.2:c.104G>A	p.Gly35Asp	p.G35D	ENST00000359303	NM_003535.2	35	gGt/gAt																																																																														
PAX5	5079	MSKCC	GRCh37	9	36840565	36840565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	26	514	1	ENST00000358127.4:c.1168C>T	p.Arg390Cys	p.R390C	ENST00000358127	NM_001280556.1	390	Cgt/Tgt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864515	57864515	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	82	737	2	ENST00000228682.2:c.1992T>A	p.His664Gln	p.H664Q	ENST00000228682	NM_005269.2	664	caT/caA																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866663	37866663	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	103	619	1	ENST00000269571.5:c.830A>T	p.Asp277Val	p.D277V	ENST00000269571		277	gAc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	158	322	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448592	89448592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	455	519	0	ENST00000336596.2:c.1556C>T	p.Thr519Met	p.T519M	ENST00000336596	NM_005233.5	519	aCg/aTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953229	81953229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	163	696	0	ENST00000359376.3:c.2195G>A	p.Arg732His	p.R732H	ENST00000359376	NM_002661.3	732	cGc/cAc																																																																														
XIAP	331	MSKCC	GRCh37	X	123034385	123034385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	131	357	0	ENST00000355640.3:c.1142G>A	p.Arg381Gln	p.R381Q	ENST00000355640		381	cGa/cAa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38968098	38968098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1258	147	563	0	ENST00000357387.3:c.1007G>A	p.Arg336His	p.R336H	ENST00000357387	NM_152756.3	336	cGt/cAt																																																																														
IRF4	3662	MSKCC	GRCh37	6	394848	394848	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	95	428	0	ENST00000380956.4:c.244C>T	p.Arg82Ter	p.R82*	ENST00000380956	NM_001195286.1	82	Cga/Tga																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38315029	38315029	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	107	495	0	ENST00000425967.3:c.35A>T	p.Glu12Val	p.E12V	ENST00000425967	NM_001174067.1	12	gAg/gTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710517	114710517	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1324	328	599	0	ENST00000543371.1:c.2T>A	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	aTg/aAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912541	32912541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1861	205	823	0	ENST00000380152.3:c.4049A>G	p.His1350Arg	p.H1350R	ENST00000380152		1350	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112151245	112151246	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0005240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	333	567	0	ENST00000257430.4:c.893_894del	p.His298LeufsTer28	p.H298Lfs*28	ENST00000257430	NM_000038.5	296	agCAca/agca																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0005330-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			766	434	510	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0005330-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			575	313	346	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226572	2226572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005330-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			272	127	631	0	ENST00000326181.6:c.2010C>G	p.Cys670Trp	p.C670W	ENST00000326181	NM_032271.2	670	tgC/tgG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	104	122	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0005367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	111	244	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	149	302	1	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778004	27778004	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	341	814	0	ENST00000369163.2:c.153G>C	p.Glu51Asp	p.E51D	ENST00000369163	NM_003536.2	51	gaG/gaC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056160	27056160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	299	388	4	ENST00000324856.7:c.1156C>T	p.Gln386Ter	p.Q386*	ENST00000324856	NM_006015.4	386	Cag/Tag																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719140	190719140	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	157	276	0	ENST00000441310.2:c.1142C>G	p.Ser381Ter	p.S381*	ENST00000441310	NM_000534.4	381	tCa/tGa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492919	8492919	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	69	472	1	ENST00000356435.5:c.2410A>G	p.Thr804Ala	p.T804A	ENST00000356435		804	Aca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380271	25380271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	221	389	0	ENST00000256078.4:c.187G>A	p.Glu63Lys	p.E63K	ENST00000256078	NM_033360.2	63	Gag/Aag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287422	46287422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	207	331	0	ENST00000334344.6:c.5281G>C	p.Glu1761Gln	p.E1761Q	ENST00000334344	NM_152641.2	1761	Gag/Cag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44896902	44896902	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0005367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	387	258	0	ENST00000377967.4:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000377967	NM_021140.2	208	Caa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0005461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			946	234	487	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			707	272	319	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			707	272	319	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715819	18715819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			693	140	441	0	ENST00000266497.5:c.3650C>T	p.Ser1217Phe	p.S1217F	ENST00000266497		1217	tCc/tTc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478227	99478228	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAT			P-0005461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1273	256	484	0	ENST00000268035.6:c.3132_3134dup	p.Arg1044_Ile1045insMet	p.R1044_I1045insM	ENST00000268035	NM_000875.3	1044	agg/agGATg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0005541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	47	388	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
MET	4233	MSKCC	GRCh37	7	116340263	116340263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	46	418	0	ENST00000397752.3:c.1125C>A	p.Asn375Lys	p.N375K	ENST00000397752	NM_000245.2	375	aaC/aaA																																																																														
BIRC3	330	MSKCC	GRCh37	11	102207533	102207533	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0005541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	81	608	0	ENST00000263464.3:c.1621+1G>T		p.X541_splice	ENST00000263464	NM_001165.4	541																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78727894	78727894	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	61	419	0	ENST00000306801.3:c.739G>T	p.Glu247Ter	p.E247*	ENST00000306801	NM_020761.2	247	Gag/Tag																																																																														
ARAF	369	MSKCC	GRCh37	X	47424664	47424664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	42	348	0	ENST00000377045.4:c.472G>T	p.Val158Phe	p.V158F	ENST00000377045	NM_001654.4	158	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			467	73	434	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			494	56	308	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46532739	46532739	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200819515		P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			434	92	301	0	ENST00000262741.5:c.339A>G	p.Ile113Met	p.I113M	ENST00000262741	NM_003629.3	113	atA/atG																																																																														
PARP1	142	MSKCC	GRCh37	1	226561959	226561959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			530	93	428	0	ENST00000366794.5:c.2038G>A	p.Glu680Lys	p.E680K	ENST00000366794	NM_001618.3	680	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948143	178948143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			525	89	261	0	ENST00000263967.3:c.2915C>T	p.Thr972Ile	p.T972I	ENST00000263967	NM_006218.2	972	aCa/aTa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6043638	6043638	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			400	26	257	0	ENST00000265849.7:c.215G>C	p.Gly72Ala	p.G72A	ENST00000265849	NM_000535.5	72	gGa/gCa																																																																														
CCND1	595	MSKCC	GRCh37	11	69456273	69456273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			482	49	273	0	ENST00000227507.2:c.192G>A	p.Met64Ile	p.M64I	ENST00000227507	NM_053056.2	64	atG/atA																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562168	21562168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	173	669	0	ENST00000382592.4:c.1751G>T	p.Ser584Ile	p.S584I	ENST00000382592	NM_014572.2	584	aGc/aTc																																																																														
MGA	23269	MSKCC	GRCh37	15	41989018	41989018	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			866	180	728	0	ENST00000219905.7:c.1810C>T	p.Gln604Ter	p.Q604*	ENST00000219905	NM_001164273.1	604	Cag/Tag																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612340	1612340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			678	138	724	0	ENST00000344749.5:c.1679G>T	p.Arg560Leu	p.R560L	ENST00000344749	NM_001136139.2	560	cGg/cTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610239	10610239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			693	127	631	0	ENST00000171111.5:c.471C>A	p.Asn157Lys	p.N157K	ENST00000171111	NM_203500.1	157	aaC/aaA																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164889	36164889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			339	36	275	0	ENST00000300305.3:c.986C>T	p.Ala329Val	p.A329V	ENST00000300305		329	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578470	7578471	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0005543-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			503	68	442	0	ENST00000269305.4:c.459_460delinsT	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	153	ccCGgc/ccTgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005563-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			778	285	356	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005563-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			693	328	471	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0005563-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			514	342	343	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
PARP1	142	MSKCC	GRCh37	1	226568861	226568861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150379323		P-0005563-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			837	242	383	1	ENST00000366794.5:c.1208G>A	p.Arg403Gln	p.R403Q	ENST00000366794	NM_001618.3	403	cGg/cAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032181	10032181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005563-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			710	199	414	0	ENST00000330684.3:c.642G>T	p.Lys214Asn	p.K214N	ENST00000330684	NM_001134407.1	214	aaG/aaT																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287889	33287891	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0005563-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			848	131	355	0	ENST00000374542.5:c.1362_1364del	p.Glu457del	p.E457del	ENST00000374542	NM_001141970.1	454	gaAGAg/gag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443610	52443610	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	400	294	0	ENST00000460680.1:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000460680	NM_004656.3	28	Caa/Taa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272113	15272113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	76	141	0	ENST00000263388.2:c.6326G>A	p.Arg2109Gln	p.R2109Q	ENST00000263388	NM_000435.2	2109	cGg/cAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76874410	76874410	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	127	440	0	ENST00000373344.5:c.5312G>C	p.Gly1771Ala	p.G1771A	ENST00000373344	NM_000489.3	1771	gGa/gCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	674	314	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0005583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	193	290	0				ENST00000310581	NM_198253.2																																																																																
IDH1	3417	MSKCC	GRCh37	2	209103871	209103871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	303	484	0	ENST00000345146.2:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000345146	NM_005896.2	360	Gaa/Aaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106522569	106522569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	253	340	0	ENST00000359195.3:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000359195	NM_002649.2	849	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032089	10032089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	309	534	0	ENST00000330684.3:c.734C>T	p.Ser245Phe	p.S245F	ENST00000330684	NM_001134407.1	245	tCc/tTc																																																																														
B2M	567	MSKCC	GRCh37	15	45007672	45007673	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	210	322	0	ENST00000558401.1:c.122dup	p.Asn41LysfsTer16	p.N41Kfs*16	ENST00000558401	NM_004048.2	40	tca/tcAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779210	3779211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	107	218	0	ENST00000262367.5:c.5837dup	p.Pro1947ThrfsTer19	p.P1947Tfs*19	ENST00000262367	NM_004380.2	1946	cca/ccCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0005622-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			260	117	415	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052972	180052972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005622-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			418	159	657	0	ENST00000261937.6:c.1318C>T	p.Arg440Cys	p.R440C	ENST00000261937	NM_182925.4	440	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0005697-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			538	153	352	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005697-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			332	175	407	0	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			470	70	299	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
RB1	5925	MSKCC	GRCh37	13	48947596	48947596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			296	50	223	0	ENST00000267163.4:c.1183C>T	p.Gln395Ter	p.Q395*	ENST00000267163	NM_000321.2	395	Caa/Taa																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794995	242794995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			643	100	458	0	ENST00000334409.5:c.214C>A	p.Pro72Thr	p.P72T	ENST00000334409	NM_005018.2	72	Ccc/Acc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11169567	11169567	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			326	53	297	0	ENST00000344626.4:c.4635+2T>A		p.X1545_splice	ENST00000344626	NM_003072.3	1545																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15288456	15288456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			316	59	191	1	ENST00000263388.2:c.4283G>A	p.Cys1428Tyr	p.C1428Y	ENST00000263388	NM_000435.2	1428	tGc/tAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300195	15300195	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			554	96	450	0	ENST00000263388.2:c.1081C>G	p.His361Asp	p.H361D	ENST00000263388	NM_000435.2	361	Cac/Gac																																																																														
ATRX	546	MSKCC	GRCh37	X	76777859	76777859	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005734-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			188	41	173	0	ENST00000373344.5:c.6857C>G	p.Thr2286Ser	p.T2286S	ENST00000373344	NM_000489.3	2286	aCc/aGc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0005737-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			281	380	464	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741925	145741925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005737-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			426	342	385	0	ENST00000428558.2:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000428558	NM_004260.3	193	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094468	27094470	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0005737-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			311	23	355	0	ENST00000324856.7:c.3178_3180delGAG	p.Glu1060del	p.E1060del	ENST00000324856	NM_006015.4	1059	aAGGag/aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0005739-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			475	28	405	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
ALK	238	MSKCC	GRCh37	2	29917797	29917797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005739-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			440	35	465	0	ENST00000389048.3:c.871C>T	p.Arg291Cys	p.R291C	ENST00000389048	NM_004304.4	291	Cgc/Tgc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005739-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			499	129	315	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106164773	106164773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005739-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			513	36	387	0	ENST00000380013.4:c.3641G>A	p.Arg1214Gln	p.R1214Q	ENST00000380013	NM_001127208.2	1214	cGg/cAg																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538978	23538978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005739-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			429	40	428	0	ENST00000380871.4:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000380871	NM_006167.3	154	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112174374	112174374	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005739-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			337	22	293	0	ENST00000257430.4:c.3083del	p.Ser1028IlefsTer9	p.S1028Ifs*9	ENST00000257430	NM_000038.5	1028	aGt/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005743-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			308	68	564	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003313	143003313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005743-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			479	60	338	0	ENST00000262992.4:c.2513G>A	p.Arg838His	p.R838H	ENST00000262992	NM_001101669.1	838	cGt/cAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346363	89346363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005743-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			384	73	523	1	ENST00000301030.4:c.6587C>A	p.Ser2196Tyr	p.S2196Y	ENST00000301030	NM_001256183.1	2196	tCc/tAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11199466	11199466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	75	1026	0	ENST00000361445.4:c.5025G>T	p.Leu1675Phe	p.L1675F	ENST00000361445	NM_004958.3	1675	ttG/ttT																																																																														
VHL	7428	MSKCC	GRCh37	3	10183794	10183794	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	52	557	3	ENST00000256474.2:c.263G>A	p.Trp88Ter	p.W88*	ENST00000256474	NM_000551.3	88	tGg/tAg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668742	52668742	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	113	933	0	ENST00000394830.3:c.1177G>T	p.Val393Phe	p.V393F	ENST00000394830	NM_018313.4	393	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005767-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			519	17	545	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005767-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			324	206	523	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432895	432895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005767-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			541	122	407	1	ENST00000399788.2:c.2021G>A	p.Arg674Gln	p.R674Q	ENST00000399788	NM_001042603.1	674	cGg/cAg																																																																														
ATR	545	MSKCC	GRCh37	3	142226846	142226846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005767-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			667	81	389	2	ENST00000350721.4:c.4958G>A	p.Arg1653Gln	p.R1653Q	ENST00000350721	NM_001184.3	1653	cGa/cAa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371617	55371617	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005767-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			430	59	402	0	ENST00000297316.4:c.308-1G>A		p.X103_splice	ENST00000297316	NM_022454.3	103																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005767-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			206	100	320	0	ENST00000304494.5:c.251A>C	p.Asp84Ala	p.D84A	ENST00000304494	NM_000077.4	84	gAc/gCc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005767-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			206	100	320	0	ENST00000304494.5:c.251A>C	p.Asp84Ala	p.D84A	ENST00000304494	NM_000077.4	84	gAc/gCc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121173	11121173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005767-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			690	76	552	0	ENST00000344626.4:c.2240C>T	p.Ala747Val	p.A747V	ENST00000344626	NM_003072.3	747	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112176064	112176064	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005768-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			272	42	410	0	ENST00000257430.4:c.4778del	p.Lys1593SerfsTer57	p.K1593Sfs*57	ENST00000257430	NM_000038.5	1591	gcA/gc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591288	67591288	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005768-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			313	41	431	0	ENST00000274335.5:c.1786G>T	p.Glu596Ter	p.E596*	ENST00000274335		596	Gag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845336	151845336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005768-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			394	36	418	0	ENST00000262189.6:c.13676G>A	p.Gly4559Asp	p.G4559D	ENST00000262189	NM_170606.2	4559	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005770-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			229	104	370	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005770-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			458	39	471	2	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005770-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			239	47	474	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056400	180056400	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005770-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			281	23	489	1	ENST00000261937.6:c.844C>T	p.Arg282Ter	p.R282*	ENST00000261937	NM_182925.4	282	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	48881457	48881457	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005770-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			313	60	384	0	ENST00000267163.4:c.179T>A	p.Leu60Ter	p.L60*	ENST00000267163	NM_000321.2	60	tTa/tAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618879	37618879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005770-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			518	56	568	0	ENST00000447079.4:c.555G>C	p.Arg185Ser	p.R185S	ENST00000447079	NM_015083.1	185	agG/agC																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651951	36651952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005770-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			360	25	392	0	ENST00000244741.5:c.74dup	p.Asp26GlyfsTer10	p.D26Gfs*10	ENST00000244741	NM_000389.4	25	gtg/gTtg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005771-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			333	279	265	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657645	37657645	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005771-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			333	571	460	0	ENST00000447079.4:c.2564delT	p.Phe855SerfsTer13	p.F855Sfs*13	ENST00000447079	NM_015083.1	854	aaT/aa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676313	37676313	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005771-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			607	233	449	0	ENST00000447079.4:c.3068delT	p.Val1023AlafsTer34	p.V1023Afs*34	ENST00000447079	NM_015083.1	1023	gTc/gc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937801	76937801	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005775-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			313	63	463	0	ENST00000373344.5:c.2947A>T	p.Lys983Ter	p.K983*	ENST00000373344	NM_000489.3	983	Aag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005775-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			253	132	400	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005868-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			506	256	356	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005868-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			435	106	444	0	ENST00000326873.7:c.843delG	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602496	10602496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005868-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			322	106	364	0	ENST00000171111.5:c.1082C>T	p.Pro361Leu	p.P361L	ENST00000171111	NM_203500.1	361	cCg/cTg																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997780	149997780	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148506316		P-0005868-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			481	151	390	0	ENST00000253339.5:c.2687G>A	p.Arg896Gln	p.R896Q	ENST00000253339		896	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005881-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			586	71	406	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0005881-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			726	66	579	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005881-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			702	53	452	1	ENST00000257904.6:c.71G>A	p.Arg24His	p.R24H	ENST00000257904	NM_000075.3	24	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101353	27101353	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005881-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			808	43	554	1	ENST00000324856.7:c.4635G>A	p.Trp1545Ter	p.W1545*	ENST00000324856	NM_006015.4	1545	tgG/tgA																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178023	56178023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005881-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			584	31	405	0	ENST00000399503.3:c.2996C>T	p.Thr999Ile	p.T999I	ENST00000399503	NM_005921.1	999	aCa/aTa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500395	99500395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005881-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			934	51	659	0	ENST00000268035.6:c.3828G>T	p.Glu1276Asp	p.E1276D	ENST00000268035	NM_000875.3	1276	gaG/gaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			453	105	313	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			904	187	429	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			234	20	212	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			573	83	377	0	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437669	52437669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1740	152	684	0	ENST00000460680.1:c.1492G>A	p.Glu498Lys	p.E498K	ENST00000460680	NM_004656.3	498	Gag/Aag																																																																														
TP63	8626	MSKCC	GRCh37	3	189455584	189455584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			418	104	363	0	ENST00000264731.3:c.118A>G	p.Met40Val	p.M40V	ENST00000264731	NM_003722.4	40	Atg/Gtg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001043	150001043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			634	60	422	0	ENST00000253339.5:c.2561G>C	p.Arg854Thr	p.R854T	ENST00000253339		854	aGa/aCa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109697	115109697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			974	259	470	0	ENST00000257566.3:c.2181G>T	p.Leu727Phe	p.L727F	ENST00000257566	NM_016569.3	727	ttG/ttT																																																																														
POLE	5426	MSKCC	GRCh37	12	133233721	133233721	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			628	185	340	0	ENST00000320574.5:c.3582+1G>T		p.X1194_splice	ENST00000320574	NM_006231.2	1194																																																																															
TSC2	7249	MSKCC	GRCh37	16	2136299	2136299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1350	92	487	0	ENST00000219476.3:c.4768G>A	p.Asp1590Asn	p.D1590N	ENST00000219476	NM_000548.3	1590	Gac/Aac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857556	9857556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			554	40	310	0	ENST00000330684.3:c.3845A>G	p.Asn1282Ser	p.N1282S	ENST00000330684	NM_001134407.1	1282	aAc/aGc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56390322	56390322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			733	160	641	2	ENST00000348428.3:c.1061G>T	p.Arg354Leu	p.R354L	ENST00000348428	NM_006785.3	354	cGg/cTg																																																																														
AKT2	208	MSKCC	GRCh37	19	40748549	40748549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			982	70	466	0	ENST00000392038.2:c.333G>T	p.Lys111Asn	p.K111N	ENST00000392038	NM_001626.4	111	aaG/aaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101612	27101612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			854	69	357	0	ENST00000324856.7:c.4899del	p.Met1634Ter	p.M1634*	ENST00000324856	NM_006015.4	1632	Ccc/cc																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204737513	204737513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			605	48	326	0	ENST00000302823.3:c.650C>G	p.Pro217Arg	p.P217R	ENST00000302823	NM_005214.4	217	cCt/cGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878287	151878287	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005925-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			906	62	456	0	ENST00000262189.6:c.6658C>T	p.Gln2220Ter	p.Q2220*	ENST00000262189	NM_170606.2	2220	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006000-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			865	106	404	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006000-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			474	45	201	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
SRC	6714	MSKCC	GRCh37	20	36031697	36031697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006000-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	60	445	1	ENST00000358208.4:c.1526G>A	p.Arg509Gln	p.R509Q	ENST00000358208		509	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112174998	112174999	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006000-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			542	47	271	0	ENST00000257430.4:c.3709_3710del	p.Gln1237GlufsTer2	p.Q1237Efs*2	ENST00000257430	NM_000038.5	1236	gCA/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			489	132	334	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			817	182	520	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			436	66	409	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266970	18266970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			95	32	64	0	ENST00000222254.8:c.281G>A	p.Arg94His	p.R94H	ENST00000222254	NM_005027.3	94	cGc/cAc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484814	57484814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			522	933	477	0	ENST00000371085.3:c.794G>T	p.Arg265Leu	p.R265L	ENST00000371085	NM_000516.4	265	cGc/cTc																																																																														
AR	367	MSKCC	GRCh37	X	66766193	66766193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			117	173	142	1	ENST00000374690.3:c.1205C>T	p.Ala402Val	p.A402V	ENST00000374690	NM_000044.3	402	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557814	187557814	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			627	148	565	0	ENST00000441802.2:c.3897del	p.Lys1299AsnfsTer69	p.K1299Nfs*69	ENST00000441802	NM_005245.3	1299	aaA/aa																																																																														
APC	324	MSKCC	GRCh37	5	112176013	112176016	+	frameshift_variant	Frame_Shift_Del	DEL	ACTA	ACTA	-			P-0006023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			359	92	357	0	ENST00000257430.4:c.4722_4725del	p.Ile1574MetfsTer75	p.I1574Mfs*75	ENST00000257430	NM_000038.5	1574	atACTA/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			47	258	796	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			17	122	660	0	ENST00000371953.3:c.1027-1G>A		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
ALK	238	MSKCC	GRCh37	2	29416700	29416700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			71	131	488	2	ENST00000389048.3:c.4253C>A	p.Pro1418His	p.P1418H	ENST00000389048	NM_004304.4	1418	cCt/cAt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191490	185191490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			306	59	524	2	ENST00000265026.3:c.2371G>A	p.Gly791Ser	p.G791S	ENST00000265026	NM_004721.4	791	Ggc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440398	49440398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			56	122	527	0	ENST00000301067.7:c.4412G>T	p.Cys1471Phe	p.C1471F	ENST00000301067	NM_003482.3	1471	tGc/tTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861913	57861913	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114543757		P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			313	108	1289	1	ENST00000228682.2:c.1214G>A	p.Arg405Gln	p.R405Q	ENST00000228682	NM_005269.2	405	cGg/cAg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222494	2222494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			554	119	683	1	ENST00000326181.6:c.688C>T	p.Pro230Ser	p.P230S	ENST00000326181	NM_032271.2	230	Cct/Tct																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788650	3788650	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200207299		P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			93	290	805	0	ENST00000262367.5:c.4304A>G	p.Asp1435Gly	p.D1435G	ENST00000262367	NM_004380.2	1435	gAt/gGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29533342	29533342	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			94	169	621	1	ENST00000358273.4:c.1345A>T	p.Lys449Ter	p.K449*	ENST00000358273	NM_001042492.2	449	Aaa/Taa																																																																														
AURKA	6790	MSKCC	GRCh37	20	54959363	54959363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			165	121	549	0	ENST00000312783.6:c.337G>A	p.Glu113Lys	p.E113K	ENST00000312783	NM_198436.1	113	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15297767	15297768	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			398	112	948	1	ENST00000263388.2:c.1872_1873del	p.Ala625GlnfsTer11	p.A625Qfs*11	ENST00000263388	NM_000435.2	624	tgTGcc/tgcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29576097	29576098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			250	90	851	2	ENST00000358273.4:c.4076dupC	p.Gln1360SerfsTer20	p.Q1360Sfs*20	ENST00000358273	NM_001042492.2	1357	ttc/ttCc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106543538	106543538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			193	15	470	1	ENST00000369096.4:c.340G>A	p.Gly114Arg	p.G114R	ENST00000369096	NM_001198.3	114	Gga/Aga																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738651	145738651	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			369	20	389	0	ENST00000428558.2:c.2413del	p.Ala805ProfsTer38	p.A805Pfs*38	ENST00000428558	NM_004260.3	805	Gcc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006112-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			442	535	448	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132465	11132465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006112-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			634	350	454	0	ENST00000344626.4:c.2681C>T	p.Thr894Met	p.T894M	ENST00000344626	NM_003072.3	894	aCg/aTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971007	21971018	+	inframe_deletion	In_Frame_Del	DEL	CAGGTCCACGGG	CAGGTCCACGGG	-			P-0006112-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			344	196	343	0	ENST00000304494.5:c.340_351delCCCGTGGACCTG	p.Pro114_Leu117del	p.P114_L117del	ENST00000304494	NM_000077.4	114	CCCGTGGACCTG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971007	21971018	+	inframe_deletion	In_Frame_Del	DEL	CAGGTCCACGGG	CAGGTCCACGGG	-			P-0006112-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			344	196	343	0	ENST00000304494.5:c.340_351delCCCGTGGACCTG	p.Pro114_Leu117del	p.P114_L117del	ENST00000304494	NM_000077.4	114	CCCGTGGACCTG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971007	21971018	+	inframe_deletion	In_Frame_Del	DEL	CAGGTCCACGGG	CAGGTCCACGGG	-			P-0006112-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			344	196	343	0	ENST00000304494.5:c.340_351delCCCGTGGACCTG	p.Pro114_Leu117del	p.P114_L117del	ENST00000304494	NM_000077.4	114	CCCGTGGACCTG/-																																																																														
PIM1	5292	MSKCC	GRCh37	6	37139211	37139211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	10	163	0	ENST00000373509.5:c.551T>A	p.Leu184His	p.L184H	ENST00000373509	NM_002648.3	184	cTc/cAc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500661	99500661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	24	242	0	ENST00000268035.6:c.4094C>G	p.Ser1365Trp	p.S1365W	ENST00000268035	NM_000875.3	1365	tCg/tGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398288	+	missense_variant	Missense_Mutation	ONP	CCAGC	CCAGC	TCAGT			P-0006121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	1042	380	0	ENST00000256078.4:c.31_35delinsACTGA	p.Ala11_Gly12delinsThrAsp	p.A11_G12delinsTD	ENST00000256078	NM_033360.2	11	GCTGGt/ACTGAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0006149-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			562	160	331	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12013741	12013741	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0006149-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			442	35	309	0	ENST00000353533.5:c.683G>C	p.Arg228Thr	p.R228T	ENST00000353533	NM_003010.3	228	aGa/aCa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131939727	131939727	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006149-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			516	107	336	0	ENST00000265335.6:c.2513A>C	p.Lys838Thr	p.K838T	ENST00000265335		838	aAg/aCg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151853050	151853050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006149-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			377	68	194	0	ENST00000262189.6:c.11905G>A	p.Val3969Ile	p.V3969I	ENST00000262189	NM_170606.2	3969	Gtt/Att																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			328	56	254	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			934	220	484	0	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237610	16237610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			404	200	336	0	ENST00000375759.3:c.1057G>T	p.Asp353Tyr	p.D353Y	ENST00000375759	NM_015001.2	353	Gat/Tat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562204	95562204	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			678	248	608	0	ENST00000343455.3:c.5053C>T	p.Gln1685Ter	p.Q1685*	ENST00000343455	NM_177438.2	1685	Cag/Tag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348742	89348743	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0006246-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	373	981	0	ENST00000301030.4:c.4207_4208delinsTT	p.Gly1403Leu	p.G1403L	ENST00000301030	NM_001256183.1	1403	GGa/TTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	183	413	1	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	190	484	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174929	11174929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	178	561	0	ENST00000361445.4:c.7105G>A	p.Glu2369Lys	p.E2369K	ENST00000361445	NM_004958.3	2369	Gag/Aag																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154321	2154321	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150866176		P-0006261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	171	654	0	ENST00000434045.2:c.607G>A	p.Glu203Lys	p.E203K	ENST00000434045	NM_001127598.1	203	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			607	466	583	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205077	128205077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			793	346	486	2	ENST00000341105.2:c.364T>A	p.Ser122Thr	p.S122T	ENST00000341105	NM_032638.4	122	Tcc/Acc																																																																														
TET2	54790	MSKCC	GRCh37	4	106193892	106193892	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			431	122	489	0	ENST00000380013.4:c.4354C>T	p.Arg1452Ter	p.R1452*	ENST00000380013	NM_001127208.2	1452	Cga/Tga																																																																														
FYN	2534	MSKCC	GRCh37	6	111983114	111983114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1684	413	605	1	ENST00000368678.4:c.1433G>A	p.Arg478Gln	p.R478Q	ENST00000368678		478	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993434	72993434	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			873	291	749	0	ENST00000268489.5:c.611T>G	p.Phe204Cys	p.F204C	ENST00000268489	NM_006885.3	204	tTc/tGc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246466	41246476	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCATGGCAG	GAGCATGGCAG	T			P-0006504-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			373	359	537	0	ENST00000357654.3:c.1072_1082delinsA	p.Leu358LysfsTer13	p.L358Kfs*13	ENST00000357654	NM_007294.3	358	CTGCCATGCTCa/Aa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006561-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			522	110	531	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006561-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			350	60	361	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006561-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			399	104	487	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101911542	101911542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006561-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			393	117	436	0	ENST00000374994.4:c.1467G>C	p.Lys489Asn	p.K489N	ENST00000374994	NM_004612.2	489	aaG/aaC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099939	27099940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006561-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			672	142	557	0	ENST00000324856.7:c.3821dup	p.Pro1275ThrfsTer12	p.P1275Tfs*12	ENST00000324856	NM_006015.4	1273	atg/atGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041669	47041669	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006561-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			627	137	590	0	ENST00000329236.7:c.1662del	p.Ser555ArgfsTer71	p.S555Rfs*71	ENST00000329236	NM_001204466.1	554	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106377	27106378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATG			P-0006561-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			665	79	563	1	ENST00000324856.7:c.5990_5993dup	p.Asp1998GlufsTer2	p.D1998Efs*2	ENST00000324856	NM_006015.4	1996	-/AATG																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	72	158	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285715	87285715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	203	533	8	ENST00000277120.3:c.52T>C	p.Phe18Leu	p.F18L	ENST00000277120		18	Ttc/Ctc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28963936	28963936	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	287	502	0	ENST00000282397.4:c.1966A>T	p.Arg656Ter	p.R656*	ENST00000282397	NM_002019.4	656	Aga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	635	439	0	ENST00000269305.4:c.428T>C	p.Val143Ala	p.V143A	ENST00000269305	NM_001126112.2	143	gTg/gCg																																																																														
APC	324	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	109	311	0	ENST00000257430.4:c.1409-1G>A		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																															
EP300	2033	MSKCC	GRCh37	22	41569733	41569733	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs144547088		P-0006592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	349	491	0	ENST00000263253.7:c.4724A>G	p.Asn1575Ser	p.N1575S	ENST00000263253	NM_001429.3	1575	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006631-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			155	92	439	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	999	MSKCC	GRCh37	16	68849442	68849442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006631-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			76	77	466	0	ENST00000261769.5:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000261769	NM_004360.3	449	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	90	463	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0006646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	58	313	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
APC	324	MSKCC	GRCh37	5	112170777	112170777	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	89	586	2	ENST00000257430.4:c.1873C>T	p.Gln625Ter	p.Q625*	ENST00000257430	NM_000038.5	625	Cag/Tag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912200	114912200	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	125	609	0	ENST00000543371.1:c.1269+1G>A		p.X423_splice	ENST00000543371	NM_001198531.1	423																																																																															
PAX5	5079	MSKCC	GRCh37	9	37015108	37015109	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	96	476	0	ENST00000358127.4:c.295dupA	p.Ile99AsnfsTer3	p.I99Nfs*3	ENST00000358127	NM_001280556.1	99	atc/aAtc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	151	238	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	151	238	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47129662	47129662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	324	635	1	ENST00000409792.3:c.5218C>T	p.Arg1740Trp	p.R1740W	ENST00000409792	NM_014159.6	1740	Cgg/Tgg																																																																														
B2M	567	MSKCC	GRCh37	15	45007901	45007901	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	158	241	0	ENST00000558401.1:c.346+2T>C		p.X116_splice	ENST00000558401	NM_004048.2	116																																																																															
TP53	7157	MSKCC	GRCh37	17	7577125	7577133	+	inframe_deletion	In_Frame_Del	DEL	CTCAAAGCT	CTCAAAGCT	-			P-0006681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	312	587	0	ENST00000269305.4:c.805_813del	p.Ser269_Glu271del	p.S269_E271del	ENST00000269305	NM_001126112.2	269	AGCTTTGAG/-																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	15	306	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0006683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	32	269	4	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0006683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	21	206	1	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679171	88679172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0006683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	24	465	0	ENST00000360948.2:c.864_865dup	p.Val289AlafsTer5	p.V289Afs*5	ENST00000360948	NM_001012338.2	289	gtg/gCGtg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910830	114910830	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	69	679	0	ENST00000543371.1:c.950del	p.Pro317GlnfsTer34	p.P317Qfs*34	ENST00000543371	NM_001198531.1	317	Cca/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578422	7578424	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0006683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	43	323	2	ENST00000269305.4:c.506_508del	p.Met169del	p.M169del	ENST00000269305	NM_001126112.2	169	aTGAcg/acg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	233	471	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	184	450	1	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0006685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	68	274	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971367	13971367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	162	399	0	ENST00000405192.2:c.562C>T	p.Arg188Cys	p.R188C	ENST00000405192	NM_001163147.1	188	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112174982	112174983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	81	326	0	ENST00000257430.4:c.3692dup	p.His1232ProfsTer8	p.H1232Pfs*8	ENST00000257430	NM_000038.5	1231	ctc/cTtc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006698-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1974	232	471	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589599	67589604	+	inframe_deletion	In_Frame_Del	DEL	TCAGTT	TCAGTT	-			P-0006698-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			456	235	367	0	ENST00000274335.5:c.1365_1370del	p.Phe456_Gln457del	p.F456_Q457del	ENST00000274335		454	acTCAGTTt/act																																																																														
TSC2	7249	MSKCC	GRCh37	16	2127678	2127678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006698-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1432	211	583	0	ENST00000219476.3:c.2917G>A	p.Glu973Lys	p.E973K	ENST00000219476	NM_000548.3	973	Gag/Aag																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58678053	58678053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006698-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			460	185	379	0	ENST00000305921.3:c.278G>A	p.Arg93His	p.R93H	ENST00000305921	NM_003620.3	93	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579438	7579439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006698-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			354	432	345	1	ENST00000269305.4:c.248dup	p.Ala84GlyfsTer65	p.A84Gfs*65	ENST00000269305	NM_001126112.2	83	gcg/gcCg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349052	89349052	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006698-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1348	340	803	0	ENST00000301030.4:c.3898del	p.Ile1300SerfsTer18	p.I1300Sfs*18	ENST00000301030	NM_001256183.1	1300	Atc/tc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591086	67591087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006698-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			534	135	325	0	ENST00000274335.5:c.1680dup	p.Lys561GlnfsTer7	p.K561Qfs*7	ENST00000274335		560	gac/gaCc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740615	145740629	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGCCGGCGTCTCTG	CAGCCGGCGTCTCTG	-			P-0006698-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			983	190	412	0	ENST00000428558.2:c.1391-3_1402del		p.X464_splice	ENST00000428558	NM_004260.3	464																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45868313	45868314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGTGGGGCAGG			P-0006698-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	149	472	0	ENST00000391945.4:c.453_463dup	p.Cys155SerfsTer30	p.C155Sfs*30	ENST00000391945	NM_000400.3	155	tgc/tCCTGCCCCACTgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006798-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			913	51	413	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006798-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			704	70	580	0	ENST00000269305.4:c.742del	p.Arg248GlyfsTer97	p.R248Gfs*97	ENST00000269305	NM_001126112.2	248	Cgg/gg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006999-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			266	153	626	2	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006999-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			116	81	356	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0006999-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			66	68	312	0	ENST00000269305.4:c.97-2A>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157522452	157522452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006999-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			352	20	521	0	ENST00000346085.5:c.4724T>C	p.Leu1575Pro	p.L1575P	ENST00000346085	NM_020732.3	1575	cTg/cCg																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128603	30128604	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	AT	AT	TG			P-0006999-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			377	87	683	0	ENST00000263025.4:c.778_779delinsCA	p.Ile260His	p.I260H	ENST00000263025	NM_002746.2	260	ATc/CAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007078-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1232	328	910	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745617	162745617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007078-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1337	280	760	2	ENST00000367921.3:c.2032G>A	p.Asp678Asn	p.D678N	ENST00000367921	NM_006182.2	678	Gat/Aat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	70	283	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	266	402	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	122	473	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
EED	8726	MSKCC	GRCh37	11	85961399	85961399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	144	612	0	ENST00000263360.6:c.176C>T	p.Thr59Met	p.T59M	ENST00000263360	NM_003797.3	59	aCg/aTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42795187	42795187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	153	532	0	ENST00000575354.2:c.2267C>T	p.Ala756Val	p.A756V	ENST00000575354	NM_015125.3	756	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175424	112175425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	104	382	0	ENST00000257430.4:c.4135dup	p.Glu1379GlyfsTer7	p.E1379Gfs*7	ENST00000257430	NM_000038.5	1378	cag/caGg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177023	56177023	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	111	370	0	ENST00000399503.3:c.2293T>A	p.Leu765Met	p.L765M	ENST00000399503	NM_005921.1	765	Ttg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0007081-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			349	471	655	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
NTRK2	4915	MSKCC	GRCh37	9	87482242	87482242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007081-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			579	447	641	0	ENST00000277120.3:c.1529C>T	p.Ser510Leu	p.S510L	ENST00000277120		510	tCg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112175389	112175390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGACAC			P-0007081-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			582	147	424	0	ENST00000257430.4:c.4100_4106dup	p.Lys1370AspfsTer7	p.K1370Dfs*7	ENST00000257430	NM_000038.5	1366	-/CAGACAC																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			89	55	141	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			112	47	178	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241726	55241726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			155	105	226	0	ENST00000275493.2:c.2174C>T	p.Thr725Met	p.T725M	ENST00000275493	NM_005228.3	725	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			313	86	372	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715625	30715625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			324	49	276	0	ENST00000359013.4:c.1358A>G	p.Glu453Gly	p.E453G	ENST00000359013	NM_001024847.2	453	gAa/gGa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55087007	55087007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			82	75	190	0	ENST00000275493.2:c.37G>A	p.Ala13Thr	p.A13T	ENST00000275493	NM_005228.3	13	Gcg/Acg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274934	38274934	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			191	30	324	0	ENST00000425967.3:c.1646C>T	p.Ser549Leu	p.S549L	ENST00000425967	NM_001174067.1	549	tCg/tTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905325	50905325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			154	39	372	1	ENST00000440232.2:c.533G>T	p.Gly178Val	p.G178V	ENST00000440232	NM_002691.3	178	gGg/gTg																																																																														
MAX	4149	MSKCC	GRCh37	14	65560491	65560496	+	inframe_deletion	In_Frame_Del	DEL	TACGTT	TACGTT	-			P-0007084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			198	72	344	0	ENST00000358664.4:c.101_106del	p.Lys34_Arg35del	p.K34_R35del	ENST00000358664	NM_002382.4	34	aAACGTAgg/agg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0007085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			706	302	292	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175749	112175750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			839	58	282	0	ENST00000257430.4:c.4459dup	p.Thr1487AsnfsTer27	p.T1487Nfs*27	ENST00000257430	NM_000038.5	1486	-/A																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056053	26056067	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGGCTTAGCGG	CCTTGGGCTTAGCGG	-	rs756916945		P-0007085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			663	231	168	0	ENST00000343677.2:c.590_604del	p.Ala197_Lys201del	p.A197_K201del	ENST00000343677	NM_005319.3	197	gCCGCTAAGCCCAAGGtt/gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			492	227	245	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325831	30325831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1050	329	345	0	ENST00000322652.5:c.2029G>C	p.Ala677Pro	p.A677P	ENST00000322652	NM_015355.2	677	Gct/Cct																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027006	71027007	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			673	117	198	0	ENST00000318789.4:c.1320dup	p.Asp441ArgfsTer20	p.D441Rfs*20	ENST00000318789	NM_032682.5	440	-/A																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007088-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			711	240	340	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007088-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			569	396	264	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007088-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			345	178	252	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
EGFR	1956	MSKCC	GRCh37	7	55241672	55241672	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007088-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			667	454	294	0	ENST00000275493.2:c.2120T>G	p.Leu707Trp	p.L707W	ENST00000275493	NM_005228.3	707	tTg/tGg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154357	2154357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007088-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			292	430	301	0	ENST00000434045.2:c.571C>T	p.Arg191Cys	p.R191C	ENST00000434045	NM_001127598.1	191	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007089-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			153	77	304	0	ENST00000324856.7:c.1650dupC	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115888	8115889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007089-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			295	161	432	1	ENST00000346208.3:c.1236dupC	p.Ser413GlnfsTer94	p.S413Qfs*94	ENST00000346208		412	tcc/tCcc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367867	15367867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007089-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			89	135	347	1	ENST00000263377.2:c.1459G>A	p.Asp487Asn	p.D487N	ENST00000263377	NM_058243.2	487	Gac/Aac																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739958	41739958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007089-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			190	104	525	0	ENST00000242208.4:c.15G>C	p.Trp5Cys	p.W5C	ENST00000242208	NM_002192.2	5	tgG/tgC																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244722	46244722	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007089-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			234	231	542	0	ENST00000334344.6:c.2816A>C	p.Tyr939Ser	p.Y939S	ENST00000334344	NM_152641.2	939	tAt/tCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007090-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			375	127	1324	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007090-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			902	179	932	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007090-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			592	117	654	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007090-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			717	78	1034	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007090-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			521	57	878	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661035	227661035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007289-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			261	32	183	0	ENST00000305123.5:c.2420C>A	p.Ser807Tyr	p.S807Y	ENST00000305123	NM_005544.2	807	tCt/tAt																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73775219	73775219	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007289-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1162	247	454	0	ENST00000254810.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000254810	NM_005324.3	13	Ggt/Cgt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30954226	30954226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007289-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			533	129	333	0	ENST00000375687.4:c.97C>G	p.Gln33Glu	p.Q33E	ENST00000375687	NM_015338.5	33	Cag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576926	7576947	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTAGGAAAGAGGCAAGGAAAG	GCTAGGAAAGAGGCAAGGAAAG	-			P-0007289-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			45	229	274	0	ENST00000269305.4:c.920-21_920del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186507000	186507001	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACTTTCT			P-0007289-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	194	527	0	ENST00000323963.5:c.1167_1174dup	p.Tyr392Ter	p.Y392*	ENST00000323963		389	gag/gaGACTTTCTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	217	434	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0007294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	212	476	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	259	431	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
FH	2271	MSKCC	GRCh37	1	241680531	241680531	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	225	491	0	ENST00000366560.3:c.218T>C	p.Val73Ala	p.V73A	ENST00000366560	NM_000143.3	73	gTg/gCg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523486	106523486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	129	345	0	ENST00000359195.3:c.2638G>A	p.Glu880Lys	p.E880K	ENST00000359195	NM_002649.2	880	Gag/Aag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120450	70120451	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	405	727	0	ENST00000245479.2:c.1456dupG	p.Val486GlyfsTer92	p.V486Gfs*92	ENST00000245479	NM_000346.3	484	-/G																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729147	66729147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	102	654	2	ENST00000307102.5:c.355C>T	p.His119Tyr	p.H119Y	ENST00000307102	NM_002755.3	119	Cat/Tat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	132	659	7	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	166	526	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	163	534	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	100	182	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	156	562	3	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	81	512	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	117	542	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	101	591	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
NF1	4763	MSKCC	GRCh37	17	29654820	29654820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	89	380	1	ENST00000358273.4:c.5572G>A	p.Ala1858Thr	p.A1858T	ENST00000358273	NM_001042492.2	1858	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112173669	112173670	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	120	478	0	ENST00000257430.4:c.2379_2380del	p.Tyr796TrpfsTer2	p.Y796Wfs*2	ENST00000257430	NM_000038.5	793	cAA/c																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030326	180030326	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150279372		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	149	689	1	ENST00000261937.6:c.3958C>T	p.Arg1320Trp	p.R1320W	ENST00000261937	NM_182925.4	1320	Cgg/Tgg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	187	964	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	171	763	2	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	64	365	1	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	187	764	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	102	517	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165327	47165327	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186148199		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	134	492	0	ENST00000409792.3:c.799G>A	p.Val267Ile	p.V267I	ENST00000409792	NM_014159.6	267	Gta/Ata																																																																														
HRAS	3265	MSKCC	GRCh37	11	533838	533838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	152	596	0	ENST00000311189.7:c.218G>A	p.Arg73His	p.R73H	ENST00000311189		73	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779210	3779211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	36	305	0	ENST00000262367.5:c.5837dup	p.Pro1947ThrfsTer19	p.P1947Tfs*19	ENST00000262367	NM_004380.2	1946	cca/ccCa																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	211	980	3	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180055919	180055919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	81	559	1	ENST00000261937.6:c.1066G>A	p.Val356Met	p.V356M	ENST00000261937	NM_182925.4	356	Gtg/Atg																																																																														
JUN	3725	MSKCC	GRCh37	1	59247894	59247894	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	272	888	1	ENST00000371222.2:c.849del	p.Val284Ter	p.V284*	ENST00000371222	NM_002228.3	283	aaA/aa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783217	9783217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140820694		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	110	536	0	ENST00000377346.4:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000377346	NM_005026.3	821	Cgc/Tgc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272533	11272533	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	23	305	0	ENST00000361445.4:c.3399-2A>G		p.X1133_splice	ENST00000361445	NM_004958.3	1133																																																																															
MTOR	2475	MSKCC	GRCh37	1	11300450	11300450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	156	531	0	ENST00000361445.4:c.1696G>A	p.Ala566Thr	p.A566T	ENST00000361445	NM_004958.3	566	Gcc/Acc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027071	48027071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	35	615	0	ENST00000234420.5:c.1949G>A	p.Gly650Asp	p.G650D	ENST00000234420	NM_000179.2	650	gGc/gAc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661129	227661129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	163	697	4	ENST00000305123.5:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000305123	NM_005544.2	776	Cgc/Tgc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053348	37053348	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	130	524	0	ENST00000231790.2:c.583A>T	p.Lys195Ter	p.K195*	ENST00000231790	NM_000249.3	195	Aaa/Taa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067170	37067170	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	87	415	0	ENST00000231790.2:c.1081A>T	p.Lys361Ter	p.K361*	ENST00000231790	NM_000249.3	361	Aaa/Taa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067474	37067474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	112	438	0	ENST00000231790.2:c.1385G>T	p.Arg462Ile	p.R462I	ENST00000231790	NM_000249.3	462	aGa/aTa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247444	71247444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	106	509	0	ENST00000318789.4:c.89G>T	p.Gly30Val	p.G30V	ENST00000318789	NM_032682.5	30	gGc/gTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139841	55139841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	125	550	0	ENST00000257290.5:c.1502G>A	p.Cys501Tyr	p.C501Y	ENST00000257290	NM_006206.4	501	tGc/tAc																																																																														
SDHA	6389	MSKCC	GRCh37	5	236591	236591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	42	156	0	ENST00000264932.6:c.1309G>A	p.Ala437Thr	p.A437T	ENST00000264932	NM_004168.2	437	Gcc/Acc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627257	86627257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	72	550	3	ENST00000274376.6:c.632G>A	p.Arg211Gln	p.R211Q	ENST00000274376	NM_002890.2	211	cGg/cAg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176671271	176671271	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	48	526	0	ENST00000439151.2:c.4378G>T	p.Gly1460Cys	p.G1460C	ENST00000439151	NM_022455.4	1460	Ggc/Tgc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910638	29910638	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	53	630	0	ENST00000376809.5:c.178T>C	p.Phe60Leu	p.F60L	ENST00000376809	NM_002116.7	60	Ttc/Ctc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910755	29910755	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	62	829	0	ENST00000376809.5:c.295C>T	p.Arg99Ter	p.R99*	ENST00000376809	NM_002116.7	99	Cga/Tga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180680	32180680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	48	709	0	ENST00000375023.3:c.2447G>T	p.Arg816Met	p.R816M	ENST00000375023	NM_004557.3	816	aGg/aTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759976	133759976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	48	785	0	ENST00000318560.5:c.2299G>A	p.Ala767Thr	p.A767T	ENST00000318560	NM_005157.4	767	Gca/Aca																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396942	139396942	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	34	142	0	ENST00000277541.6:c.5168-2A>G		p.X1723_splice	ENST00000277541	NM_017617.3	1723																																																																															
TET1	80312	MSKCC	GRCh37	10	70450964	70450964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	110	382	1	ENST00000373644.4:c.5804C>T	p.Thr1935Met	p.T1935M	ENST00000373644	NM_030625.2	1935	aCg/aTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325150	123325150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	178	523	1	ENST00000358487.5:c.178G>A	p.Val60Met	p.V60M	ENST00000358487	NM_000141.4	60	Gtg/Atg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138858	64138858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	78	376	2	ENST00000334205.4:c.2225G>A	p.Arg742His	p.R742H	ENST00000334205	NM_003942.2	742	cGc/cAc																																																																														
CCND2	894	MSKCC	GRCh37	12	4383301	4383301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	69	514	0	ENST00000261254.3:c.95C>T	p.Thr32Ile	p.T32I	ENST00000261254	NM_001759.3	32	aCc/aTc																																																																														
ETV6	2120	MSKCC	GRCh37	12	11905406	11905406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	39	422	0	ENST00000396373.4:c.56C>A	p.Pro19His	p.P19H	ENST00000396373	NM_001987.4	19	cCt/cAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244911	46244911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	131	618	0	ENST00000334344.6:c.3005C>T	p.Thr1002Ile	p.T1002I	ENST00000334344	NM_152641.2	1002	aCt/aTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435998	49435998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	91	475	1	ENST00000301067.7:c.5983G>A	p.Gly1995Arg	p.G1995R	ENST00000301067	NM_003482.3	1995	Gga/Aga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431367	121431367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	72	491	0	ENST00000257555.6:c.571G>T	p.Gly191Cys	p.G191C	ENST00000257555		191	Ggt/Tgt																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30133315	30133315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	63	931	0	ENST00000263025.4:c.183C>A	p.Asp61Glu	p.D61E	ENST00000263025	NM_002746.2	61	gaC/gaA																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654610	67654610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	140	576	0	ENST00000264010.4:c.1097T>C	p.Leu366Ser	p.L366S	ENST00000264010	NM_006565.3	366	tTa/tCa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923666	72923666	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	170	765	0	ENST00000268489.5:c.3412A>T	p.Ile1138Phe	p.I1138F	ENST00000268489	NM_006885.3	1138	Atc/Ttc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348493	89348493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	157	969	0	ENST00000301030.4:c.4457G>A	p.Arg1486Gln	p.R1486Q	ENST00000301030	NM_001256183.1	1486	cGg/cAg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217629	7217629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	125	706	0	ENST00000380728.2:c.298C>T	p.Arg100Trp	p.R100W	ENST00000380728		100	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	86	655	1	ENST00000269305.4:c.845G>T	p.Arg282Leu	p.R282L	ENST00000269305	NM_001126112.2	282	cGg/cTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29586143	29586143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	32	337	0	ENST00000358273.4:c.4426C>T	p.Arg1476Cys	p.R1476C	ENST00000358273	NM_001042492.2	1476	Cgc/Tgc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2214549	2214549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	205	789	1	ENST00000398665.3:c.1877T>C	p.Leu626Pro	p.L626P	ENST00000398665	NM_032482.2	626	cTg/cCg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10244923	10244923	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	153	725	0	ENST00000340748.4:c.4786A>G	p.Met1596Val	p.M1596V	ENST00000340748		1596	Atg/Gtg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10260539	10260539	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	141	634	1	ENST00000340748.4:c.2323T>C	p.Tyr775His	p.Y775H	ENST00000340748		775	Tat/Cat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281592	15281592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	136	824	2	ENST00000263388.2:c.4781C>T	p.Ser1594Leu	p.S1594L	ENST00000263388	NM_000435.2	1594	tCg/tTg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19261495	19261495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	140	657	5	ENST00000162023.5:c.50G>A	p.Arg17Gln	p.R17Q	ENST00000162023		17	cGg/cAg																																																																														
CIC	23152	MSKCC	GRCh37	19	42791392	42791392	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	171	596	2	ENST00000575354.2:c.452C>T	p.Ala151Val	p.A151V	ENST00000575354	NM_015125.3	151	gCc/gTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856056	45856056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	34	502	0	ENST00000391945.4:c.1850C>T	p.Ala617Val	p.A617V	ENST00000391945	NM_000400.3	617	gCc/gTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867286	45867286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	73	228	1	ENST00000391945.4:c.907G>A	p.Ala303Thr	p.A303T	ENST00000391945	NM_000400.3	303	Gcc/Acc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868176	45868176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140175332		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	133	616	0	ENST00000391945.4:c.514G>A	p.Ala172Thr	p.A172T	ENST00000391945	NM_000400.3	172	Gct/Act																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868194	45868194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	77	573	2	ENST00000391945.4:c.496C>T	p.Arg166Cys	p.R166C	ENST00000391945	NM_000400.3	166	Cgt/Tgt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31389092	31389092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	127	441	0	ENST00000328111.2:c.2005G>T	p.Gly669Cys	p.G669C	ENST00000328111	NM_006892.3	669	Ggc/Tgc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29092948	29092948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201206424		P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	131	501	0	ENST00000328354.6:c.1036C>T	p.Arg346Cys	p.R346C	ENST00000328354	NM_007194.3	346	Cgt/Tgt																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20150318	20150318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	173	590	0	ENST00000379607.5:c.319G>A	p.Gly107Ser	p.G107S	ENST00000379607	NM_001412.3	107	Ggc/Agc																																																																														
ARAF	369	MSKCC	GRCh37	X	47430836	47430836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	102	666	0	ENST00000377045.4:c.1801G>A	p.Ala601Thr	p.A601T	ENST00000377045	NM_001654.4	601	Gca/Aca																																																																														
XIAP	331	MSKCC	GRCh37	X	123019820	123019820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	145	449	0	ENST00000355640.3:c.308C>T	p.Thr103Met	p.T103M	ENST00000355640		103	aCg/aTg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621851	1621852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	35	679	0	ENST00000344749.5:c.940dup	p.Ala314GlyfsTer35	p.A314Gfs*35	ENST00000344749	NM_001136139.2	314	gcc/gGcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720665	89720666	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	53	105	0	ENST00000371953.3:c.820dupT	p.Trp274LeufsTer24	p.W274Lfs*24	ENST00000371953	NM_000314.4	272	-/T																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099889	157099890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	201	668	0	ENST00000346085.5:c.831dup	p.Gly278ArgfsTer257	p.G278Rfs*257	ENST00000346085	NM_020732.3	276	gcc/gCcc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	464333	464334	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	44	726	0	ENST00000399788.2:c.860_861del	p.Ser287CysfsTer2	p.S287Cfs*2	ENST00000399788	NM_001042603.1	287	tCT/t																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31394066	31394066	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	37	497	0	ENST00000328111.2:c.2357del	p.Asn786ThrfsTer8	p.N786Tfs*8	ENST00000328111	NM_006892.3	785	Aaa/aa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271747	15271747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	90	527	1	ENST00000263388.2:c.6692del	p.Pro2231GlnfsTer15	p.P2231Qfs*15	ENST00000263388	NM_000435.2	2231	cCa/ca																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	10	13	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																														
MET	4233	MSKCC	GRCh37	7	116403181	116403182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	147	426	0	ENST00000397752.3:c.2442_2443insA	p.Leu815ThrfsTer18	p.L815Tfs*18	ENST00000397752	NM_000245.2	814	-/A																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469772	157469772	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	163	636	0	ENST00000346085.5:c.2570del	p.Pro857GlnfsTer57	p.P857Qfs*57	ENST00000346085	NM_020732.3	856	Ccc/cc																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665446	138665446	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	15	306	0	ENST00000330315.3:c.119del	p.Gly40ValfsTer110	p.G40Vfs*110	ENST00000330315	NM_023067.3	40	gGt/gt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615698	1615698	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	81	1152	1	ENST00000344749.5:c.1573delC	p.Arg525GlyfsTer18	p.R525Gfs*18	ENST00000344749	NM_001136139.2	525	Cgg/gg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29099524	29099525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	49	561	1	ENST00000328354.6:c.876dupT	p.Asp293Ter	p.D293*	ENST00000328354	NM_007194.3	292	-/T																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845787	151845789	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	83	541	0	ENST00000262189.6:c.13223_13225del	p.Glu4408del	p.E4408del	ENST00000262189	NM_170606.2	4408	gAAGgt/ggt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	44	333	0	ENST00000334205.4:c.2287delC	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081568	143081569	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	132	593	0	ENST00000262992.4:c.1505dup	p.Val503SerfsTer15	p.V503Sfs*15	ENST00000262992	NM_001101669.1	502	cca/ccCa																																																																														
FANCC	2176	MSKCC	GRCh37	9	98003011	98003011	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	90	440	3	ENST00000289081.3:c.265del	p.Ile89PhefsTer2	p.I89Ffs*2	ENST00000289081	NM_000136.2	89	Att/tt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510197	187510197	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	185	792	0	ENST00000441802.2:c.13316delC	p.Pro4439GlnfsTer48	p.P4439Qfs*48	ENST00000441802	NM_005245.3	4439	cCa/ca																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508725	106508725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	128	449	0	ENST00000359195.3:c.723del	p.Gly242AlafsTer17	p.G242Afs*17	ENST00000359195	NM_002649.2	240	aCc/ac																																																																														
APC	324	MSKCC	GRCh37	5	112178033	112178033	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	170	639	0	ENST00000257430.4:c.6747del	p.Gly2250AlafsTer29	p.G2250Afs*29	ENST00000257430	NM_000038.5	2248	Aaa/aa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045918	180045920	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTC	CTC	-			P-0007297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	48	220	0	ENST00000261937.6:c.2851_2853del	p.Glu951del	p.E951del	ENST00000261937	NM_182925.4	951	GAG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7574002	7574002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	206	574	0	ENST00000269305.4:c.1025G>C	p.Arg342Pro	p.R342P	ENST00000269305	NM_001126112.2	342	cGa/cCa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106049	27106049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	48	280	0	ENST00000324856.7:c.5660G>A	p.Gly1887Asp	p.G1887D	ENST00000324856	NM_006015.4	1887	gGt/gAt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436717	110436717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	59	520	0	ENST00000375856.3:c.1684G>A	p.Asp562Asn	p.D562N	ENST00000375856	NM_003749.2	562	Gac/Aac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946443	2946445	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0007297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	55	580	0	ENST00000396946.4:c.3292_3294del	p.Glu1098del	p.E1098del	ENST00000396946	NM_032415.4	1098	GAG/-																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251912	153251912	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	94	523	0	ENST00000281708.4:c.1094G>A	p.Trp365Ter	p.W365*	ENST00000281708	NM_033632.3	365	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577560	7577568	+	inframe_deletion	In_Frame_Del	DEL	AACTGTTAC	AACTGTTAC	-			P-0007334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	84	440	0	ENST00000269305.4:c.713_721del	p.Cys238_Ser240del	p.C238_S240del	ENST00000269305	NM_001126112.2	238	tGTAACAGTTcc/tcc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589617	67589628	+	inframe_deletion	In_Frame_Del	DEL	TCGAGAATATGA	TCGAGAATATGA	-			P-0007334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	56	366	0	ENST00000274335.5:c.1381_1392del	p.Glu462_Arg465del	p.E462_R465del	ENST00000274335		460	agTCGAGAATATGAt/agt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11958231	11958231	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	40	206	0	ENST00000353533.5:c.144del	p.Phe48LeufsTer14	p.F48Lfs*14	ENST00000353533	NM_003010.3	47	aaT/aa																																																																														
APC	324	MSKCC	GRCh37	5	112154967	112154968	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	222	494	0	ENST00000257430.4:c.1239dup	p.Arg414ThrfsTer5	p.R414Tfs*5	ENST00000257430	NM_000038.5	413	ata/atAa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	85	478	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	61	403	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	95	596	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519456	176519456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	92	602	0	ENST00000292408.4:c.862G>A	p.Val288Ile	p.V288I	ENST00000292408	NM_213647.1	288	Gtc/Atc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037445	12037445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	182	497	0	ENST00000396373.4:c.1076G>T	p.Arg359Leu	p.R359L	ENST00000396373	NM_001987.4	359	cGa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	87	477	0	ENST00000257430.4:c.4285del	p.Gln1429LysfsTer44	p.Q1429Kfs*44	ENST00000257430	NM_000038.5	1429	Caa/aa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120114	70120115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0007368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	24	65	0	ENST00000245479.2:c.1120_1121dup	p.Gln375ArgfsTer9	p.Q375Rfs*9	ENST00000245479	NM_000346.3	372	-/CC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	92	454	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0007373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	130	500	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467500	66467500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	157	477	1	ENST00000273854.3:c.769G>A	p.Glu257Lys	p.E257K	ENST00000273854	NM_004439.5	257	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245945	46245945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	113	425	0	ENST00000334344.6:c.4039C>A	p.Gln1347Lys	p.Q1347K	ENST00000334344	NM_152641.2	1347	Caa/Aaa																																																																														
AR	367	MSKCC	GRCh37	X	66765736	66765736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	90	372	0	ENST00000374690.3:c.748G>T	p.Gly250Cys	p.G250C	ENST00000374690	NM_000044.3	250	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			49	452	371	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			258	753	718	19	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																																																														
APC	324	MSKCC	GRCh37	5	112175756	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			230	215	386	1	ENST00000257430.4:c.4466del	p.Leu1489TyrfsTer18	p.L1489Yfs*18	ENST00000257430	NM_000038.5	1489	Tta/ta																																																																														
APC	324	MSKCC	GRCh37	5	112155031	112155032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			294	197	373	0	ENST00000257430.4:c.1307dup	p.Asn436LysfsTer8	p.N436Kfs*8	ENST00000257430	NM_000038.5	434	-/A																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445008	89445008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			571	265	476	1	ENST00000336596.2:c.1328T>C	p.Ile443Thr	p.I443T	ENST00000336596	NM_005233.5	443	aTt/aCt																																																																														
HGF	3082	MSKCC	GRCh37	7	81350071	81350071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	286	594	0	ENST00000222390.5:c.1261G>T	p.Asp421Tyr	p.D421Y	ENST00000222390	NM_000601.4	421	Gac/Tac																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589692	69589692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			113	88	219	0	ENST00000168712.1:c.161C>T	p.Ser54Leu	p.S54L	ENST00000168712	NM_002007.2	54	tCg/tTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68835687	68835687	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			956	377	745	1	ENST00000261769.5:c.278A>G	p.Asn93Ser	p.N93S	ENST00000261769	NM_004360.3	93	aAc/aGc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17950432	17950432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			424	238	391	0	ENST00000458235.1:c.1295G>A	p.Arg432His	p.R432H	ENST00000458235	NM_000215.3	432	cGc/cAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31020700	31020700	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007377-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	215	410	1	ENST00000375687.4:c.997A>T	p.Met333Leu	p.M333L	ENST00000375687	NM_015338.5	333	Atg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	62	207	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	126	319	1	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259328	11259328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	81	225	0	ENST00000361445.4:c.4240G>A	p.Glu1414Lys	p.E1414K	ENST00000361445	NM_004958.3	1414	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175449	112175449	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	58	163	0	ENST00000257430.4:c.4158A>T	p.Arg1386Ser	p.R1386S	ENST00000257430	NM_000038.5	1386	agA/agT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845262	151845262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	48	139	0	ENST00000262189.6:c.13750C>T	p.Arg4584Trp	p.R4584W	ENST00000262189	NM_170606.2	4584	Cgg/Tgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401342	139401342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	64	190	0	ENST00000277541.6:c.3727A>G	p.Thr1243Ala	p.T1243A	ENST00000277541	NM_017617.3	1243	Acc/Gcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434889	49434889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	22	136	0	ENST00000301067.7:c.6664C>T	p.Gln2222Ter	p.Q2222*	ENST00000301067	NM_003482.3	2222	Cag/Tag																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223813	2223813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	49	203	0	ENST00000326181.6:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000326181	NM_032271.2	371	Cgg/Tgg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561495	9561495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146341429		P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	103	159	1	ENST00000353224.5:c.287G>A	p.Arg96His	p.R96H	ENST00000353224	NM_177990.2	96	cGc/cAc																																																																														
AR	367	MSKCC	GRCh37	X	66765350	66765350	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	89	120	0	ENST00000374690.3:c.362C>A	p.Ser121Ter	p.S121*	ENST00000374690	NM_000044.3	121	tCg/tAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	108	217	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0007486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	101	152	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
MST1R	4486	MSKCC	GRCh37	3	49940127	49940127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	187	353	1	ENST00000296474.3:c.916C>T	p.Arg306Cys	p.R306C	ENST00000296474	NM_002447.2	306	Cgc/Tgc																																																																														
PGR	5241	MSKCC	GRCh37	11	100933389	100933389	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	56	457	1	ENST00000325455.5:c.2001A>T	p.Gln667His	p.Q667H	ENST00000325455	NM_001202474.3	667	caA/caT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974936	15974936	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	169	279	0	ENST00000268712.3:c.3939del	p.Lys1313AsnfsTer48	p.K1313Nfs*48	ENST00000268712	NM_006311.3	1313	aaA/aa																																																																														
APC	324	MSKCC	GRCh37	5	112174590	112174590	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	155	276	0	ENST00000257430.4:c.3299del	p.Ser1100PhefsTer26	p.S1100Ffs*26	ENST00000257430	NM_000038.5	1100	tCt/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	11	122	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	39	237	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038479	180038479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	21	185	0	ENST00000261937.6:c.3538G>A	p.Glu1180Lys	p.E1180K	ENST00000261937	NM_182925.4	1180	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	154	491	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0007489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	113	243	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198264983	198264983	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	14	246	0	ENST00000335508.6:c.2894G>C	p.Cys965Ser	p.C965S	ENST00000335508	NM_012433.2	965	tGt/tCt																																																																														
POLE	5426	MSKCC	GRCh37	12	133226290	133226291	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0007489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	24	345	0	ENST00000320574.5:c.3767_3768del	p.Gly1256AlafsTer98	p.G1256Afs*98	ENST00000320574	NM_006231.2	1256	gGG/g																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593525	48593526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			33	65	220	0	ENST00000342988.3:c.1278dup	p.His427SerfsTer2	p.H427Sfs*2	ENST00000342988	NM_005359.5	426	gtt/gTtt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	168	313	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653814	89653814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	110	339	1	ENST00000371953.3:c.112C>T	p.Pro38Ser	p.P38S	ENST00000371953	NM_000314.4	38	Cct/Tct																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455097	50455097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	117	332	0	ENST00000331340.3:c.644C>T	p.Ser215Phe	p.S215F	ENST00000331340	NM_006060.4	215	tCt/tTt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012115	16012115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	177	487	0	ENST00000268712.3:c.2167C>T	p.Pro723Ser	p.P723S	ENST00000268712	NM_006311.3	723	Cca/Tca																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144747	11144812	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCGCCCACCCCGGCCCCTCCTCAGCGGCACTGACAGTTTGCAATCTTATAGGAGGAAGACGAGGT	GCCGCCCACCCCGGCCCCTCCTCAGCGGCACTGACAGTTTGCAATCTTATAGGAGGAAGACGAGGT	-			P-0007492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	73	164	0	ENST00000344626.4:c.3874-49_3890del		p.X1292_splice	ENST00000344626	NM_003072.3	1292																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	776	269	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45796937	45796937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	1085	373	0	ENST00000372115.3:c.1351C>A	p.Pro451Thr	p.P451T	ENST00000372115	NM_001048171.1	451	Cca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	98	270	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	45	223	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	63	244	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562363	21562363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	65	211	0	ENST00000382592.4:c.1556C>T	p.Pro519Leu	p.P519L	ENST00000382592	NM_014572.2	519	cCg/cTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411291	63411291	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	119	423	0	ENST00000330258.3:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000330258	NM_152424.3	626	Cga/Tga																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737329	145737329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	98	338	0	ENST00000428558.2:c.3358G>C	p.Glu1120Gln	p.E1120Q	ENST00000428558	NM_004260.3	1120	Gag/Cag																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41239868	41239868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	103	275	0	ENST00000379561.5:c.482G>A	p.Gly161Asp	p.G161D	ENST00000379561	NM_002015.3	161	gGc/gAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435312	56435312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139405076		P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	92	195	0	ENST00000407977.2:c.1825C>T	p.Arg609Trp	p.R609W	ENST00000407977		609	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604731	48604731	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	94	289	0	ENST00000342988.3:c.1553T>A	p.Ile518Asn	p.I518N	ENST00000342988	NM_005359.5	518	aTc/aAc																																																																														
XIAP	331	MSKCC	GRCh37	X	123020108	123020108	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	170	467	0	ENST00000355640.3:c.596A>C	p.Gln199Pro	p.Q199P	ENST00000355640		199	cAg/cCg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118720	115118721	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	92	402	0	ENST00000257566.3:c.620_621del	p.Leu207GlnfsTer19	p.L207Qfs*19	ENST00000257566	NM_016569.3	207	cTG/c																																																																														
APC	324	MSKCC	GRCh37	5	112175686	112175686	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	74	325	0	ENST00000257430.4:c.4395del	p.Ser1465ArgfsTer8	p.S1465Rfs*8	ENST00000257430	NM_000038.5	1465	agT/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	89	355	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	247	501	2	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	118	279	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879673	151879673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	11	116	0	ENST00000262189.6:c.5272C>T	p.Arg1758Cys	p.R1758C	ENST00000262189	NM_170606.2	1758	Cgt/Tgt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967242	93967242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	96	356	0	ENST00000369303.4:c.2111-1G>T		p.X704_splice	ENST00000369303	NM_004440.3	704																																																																															
HGF	3082	MSKCC	GRCh37	7	81355310	81355310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	180	371	0	ENST00000222390.5:c.1064G>A	p.Arg355Gln	p.R355Q	ENST00000222390	NM_000601.4	355	cGa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133252748	133252748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	93	362	0	ENST00000320574.5:c.952G>A	p.Glu318Lys	p.E318K	ENST00000320574	NM_006231.2	318	Gaa/Aaa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117957	70117957	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	69	127	0	ENST00000245479.2:c.425T>G	p.Leu142Arg	p.L142R	ENST00000245479	NM_000346.3	142	cTc/cGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	128	283	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0007591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	207	307	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0007591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	197	269	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0007591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	235	346	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14014221	14014221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	113	139	0	ENST00000311895.7:c.199G>A	p.Ala67Thr	p.A67T	ENST00000311895	NM_005236.2	67	Gcc/Acc																																																																														
MED12	9968	MSKCC	GRCh37	X	70347225	70347225	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	328	635	0	ENST00000374080.3:c.2889T>A	p.Asp963Glu	p.D963E	ENST00000374080		963	gaT/gaA																																																																														
ATRX	546	MSKCC	GRCh37	X	76918999	76918999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	390	524	0	ENST00000373344.5:c.3992C>A	p.Ser1331Tyr	p.S1331Y	ENST00000373344	NM_000489.3	1331	tCt/tAt																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	72	296	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	272	343	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	347	378	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	198	350	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	160	218	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	176	332	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114905771	114905771	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	303	529	3	ENST00000543371.1:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000543371	NM_001198531.1	264	Caa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552647	18552647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	285	490	0	ENST00000266497.5:c.2058T>A	p.Asn686Lys	p.N686K	ENST00000266497		686	aaT/aaA																																																																														
APC	324	MSKCC	GRCh37	5	112176024	112176024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	263	263	0	ENST00000257430.4:c.4733del	p.Cys1578LeufsTer72	p.C1578Lfs*72	ENST00000257430	NM_000038.5	1578	tGt/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	89	295	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	45	195	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	194	238	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519446	137519446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	37	180	1	ENST00000367739.4:c.1192C>T	p.His398Tyr	p.H398Y	ENST00000367739	NM_000416.2	398	Cac/Tac																																																																														
AR	367	MSKCC	GRCh37	X	66766238	66766238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	70	173	0	ENST00000374690.3:c.1250C>T	p.Ala417Val	p.A417V	ENST00000374690	NM_000044.3	417	gCg/gTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81346550	81346550	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148293411		P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	58	276	0	ENST00000222390.5:c.1403G>A	p.Arg468His	p.R468H	ENST00000222390	NM_000601.4	468	cGt/cAt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468158	50468158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	93	190	0	ENST00000331340.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331340	NM_006060.4	465	Gaa/Aaa																																																																														
BCL6	604	MSKCC	GRCh37	3	187442854	187442854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	8	149	0	ENST00000232014.4:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000232014	NM_001130845.1	618	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112174058	112174058	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	44	295	0	ENST00000257430.4:c.2767A>T	p.Arg923Ter	p.R923*	ENST00000257430	NM_000038.5	923	Aga/Tga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166872	32166872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	90	153	0	ENST00000375023.3:c.4366G>A	p.Gly1456Arg	p.G1456R	ENST00000375023	NM_004557.3	1456	Ggg/Agg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943692	9943692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	56	269	0	ENST00000330684.3:c.1249G>A	p.Val417Ile	p.V417I	ENST00000330684	NM_001134407.1	417	Gtc/Atc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794655	42794655	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	42	241	0	ENST00000575354.2:c.1739del	p.Gly580ValfsTer148	p.G580Vfs*148	ENST00000575354	NM_015125.3	579	Ggg/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	162	313	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	94	159	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257536	16257536	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	73	317	0	ENST00000375759.3:c.4801G>C	p.Asp1601His	p.D1601H	ENST00000375759	NM_015001.2	1601	Gac/Cac																																																																														
RB1	5925	MSKCC	GRCh37	13	49037923	49037923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	103	379	0	ENST00000267163.4:c.2163C>A	p.Phe721Leu	p.F721L	ENST00000267163	NM_000321.2	721	ttC/ttA																																																																														
RB1	5925	MSKCC	GRCh37	13	49039161	49039161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	83	263	0	ENST00000267163.4:c.2239G>A	p.Glu747Lys	p.E747K	ENST00000267163	NM_000321.2	747	Gag/Aag																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128216	30128216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0007620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	118	370	0	ENST00000263025.4:c.1016A>T	p.Glu339Val	p.E339V	ENST00000263025	NM_002746.2	339	gAg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	82	226	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	319	311	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174670	112174670	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	210	404	0	ENST00000257430.4:c.3379C>T	p.Gln1127Ter	p.Q1127*	ENST00000257430	NM_000038.5	1127	Cag/Tag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923778	131923778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	98	300	0	ENST00000265335.6:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000265335		350	Cag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508461	106508461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	86	69	0	ENST00000359195.3:c.455G>A	p.Arg152Gln	p.R152Q	ENST00000359195	NM_002649.2	152	cGg/cAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18747474	18747474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	106	350	0	ENST00000266497.5:c.3935C>G	p.Thr1312Arg	p.T1312R	ENST00000266497		1312	aCa/aGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1404	196	548	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	227	303	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161324	55161324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	152	424	0	ENST00000257290.5:c.3155C>T	p.Thr1052Met	p.T1052M	ENST00000257290	NM_006206.4	1052	aCg/aTg																																																																														
CASP8	841	MSKCC	GRCh37	2	202149619	202149619	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	186	449	0	ENST00000358485.4:c.1060A>T	p.Ile354Phe	p.I354F	ENST00000358485	NM_001080125.1	354	Att/Ttt																																																																														
MYC	4609	MSKCC	GRCh37	8	128750765	128750765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	272	359	0	ENST00000377970.2:c.302A>G	p.Asn101Ser	p.N101S	ENST00000377970	NM_002467.4	101	aAc/aGc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894992	101894992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	252	530	0	ENST00000374994.4:c.545A>G	p.Tyr182Cys	p.Y182C	ENST00000374994	NM_004612.2	182	tAt/tGt																																																																														
ATM	472	MSKCC	GRCh37	11	108218035	108218035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	393	460	0	ENST00000278616.4:c.8614C>G	p.His2872Asp	p.H2872D	ENST00000278616	NM_000051.3	2872	Cat/Gat																																																																														
GPS2	2874	MSKCC	GRCh37	17	7218300	7218300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	140	437	1	ENST00000380728.2:c.72G>A	p.Met24Ile	p.M24I	ENST00000380728		24	atG/atA																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51436101	51436101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	315	338	2	ENST00000262662.1:c.61C>T	p.Leu21Phe	p.L21F	ENST00000262662		21	Ctt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7572971	7572971	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	723	640	0	ENST00000269305.4:c.1138del	p.His380IlefsTer42	p.H380Ifs*42	ENST00000269305	NM_001126112.2	380	Cat/at																																																																														
APC	324	MSKCC	GRCh37	5	112175349	112175353	+	frameshift_variant	Frame_Shift_Del	DEL	AATTT	AATTT	-			P-0007669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	531	291	0	ENST00000257430.4:c.4058_4062del	p.Glu1353ValfsTer20	p.E1353Vfs*20	ENST00000257430	NM_000038.5	1353	gAATTT/g																																																																														
APC	324	MSKCC	GRCh37	5	112175343	112175344	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGGCACAA			P-0007669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	543	291	0	ENST00000257430.4:c.4052_4053insCAGGCACAA	p.Ala1351_Val1352insArgHisAsn	p.A1351_V1352insRHN	ENST00000257430	NM_000038.5	1351	gct/gcCAGGCACAAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42021542	42021543	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TA			P-0007669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2023	143	695	2	ENST00000219905.7:c.3838_3839delinsTA	p.Ala1280Ter	p.A1280*	ENST00000219905	NM_001164273.1	1280	GCa/TAa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1693	671	578	2	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	252	474	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0007680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	138	403	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108213967	108213967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	174	323	0	ENST00000278616.4:c.8287C>T	p.Arg2763Ter	p.R2763*	ENST00000278616	NM_000051.3	2763	Cga/Tga																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469564	25469564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	1080	514	0	ENST00000264709.3:c.1204C>T	p.Gln402Ter	p.Q402*	ENST00000264709	NM_175629.2	402	Cag/Tag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59821870	59821870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	407	572	2	ENST00000259008.2:c.2180C>A	p.Pro727Gln	p.P727Q	ENST00000259008	NM_032043.2	727	cCa/cAa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019464	31019464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	32	287	0	ENST00000375687.4:c.961C>T	p.Arg321Trp	p.R321W	ENST00000375687	NM_015338.5	321	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577557	7577558	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	500	366	0	ENST00000269305.4:c.723dup	p.Cys242LeufsTer22	p.C242Lfs*22	ENST00000269305	NM_001126112.2	241	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112175983	112175991	+	inframe_deletion	In_Frame_Del	DEL	AGATGATTC	AGATGATTC	-			P-0007680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	137	301	0	ENST00000257430.4:c.4699_4707del	p.Ser1567_Asp1569del	p.S1567_D1569del	ENST00000257430	NM_000038.5	1564	ttAGATGATTCa/tta																																																																														
APC	324	MSKCC	GRCh37	5	112162819	112162819	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	252	390	0	ENST00000257430.4:c.1423A>T	p.Ile475Phe	p.I475F	ENST00000257430	NM_000038.5	475	Att/Ttt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	246	294	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	627	538	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341596	89341596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	234	296	0	ENST00000301030.4:c.7474G>A	p.Ala2492Thr	p.A2492T	ENST00000301030	NM_001256183.1	2492	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	253	304	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117774	70117774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	262	549	2	ENST00000245479.2:c.242T>C	p.Leu81Pro	p.L81P	ENST00000245479	NM_000346.3	81	cTc/cCc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368304	45368304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	364	508	0	ENST00000262160.6:c.1298G>A	p.Ser433Asn	p.S433N	ENST00000262160	NM_005901.5	433	aGt/aAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937134	76937134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	723	832	2	ENST00000373344.5:c.3614C>A	p.Ser1205Tyr	p.S1205Y	ENST00000373344	NM_000489.3	1205	tCt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	197	313	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222865	5222865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	35	181	0	ENST00000357368.4:c.2938G>A	p.Glu980Lys	p.E980K	ENST00000357368	NM_002850.3	980	Gag/Aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	95	264	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	57	409	0	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	144	564	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	447	565	16	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	50	353	0	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	105	427	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988348	36988348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	19	118	1	ENST00000354822.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000354822	NM_001079668.2	102	gCg/gTg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	47	204	0	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11186733	11186733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	104	558	0	ENST00000361445.4:c.6472C>T	p.Pro2158Ser	p.P2158S	ENST00000361445	NM_004958.3	2158	Ccg/Tcg																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747937	41747937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	59	310	1	ENST00000226382.2:c.832G>T	p.Gly278Cys	p.G278C	ENST00000226382	NM_003924.3	278	Ggc/Tgc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555104	106555104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	92	333	0	ENST00000369096.4:c.2221C>T	p.Arg741Trp	p.R741W	ENST00000369096	NM_001198.3	741	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875067	151875067	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	56	219	0	ENST00000262189.6:c.7471A>G	p.Thr2491Ala	p.T2491A	ENST00000262189	NM_170606.2	2491	Acc/Gcc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417575	139417575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	78	465	2	ENST00000277541.6:c.469C>T	p.Pro157Ser	p.P157S	ENST00000277541	NM_017617.3	157	Ccc/Tcc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88649849	88649849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	48	219	0	ENST00000372037.3:c.98C>T	p.Thr33Ile	p.T33I	ENST00000372037	NM_004329.2	33	aCt/aTt																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625393	69625393	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	86	480	0	ENST00000334134.2:c.400T>C	p.Tyr134His	p.Y134H	ENST00000334134	NM_005247.2	134	Tac/Cac																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94211958	94211958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	168	525	1	ENST00000323929.3:c.487G>A	p.Asp163Asn	p.D163N	ENST00000323929	NM_005591.3	163	Gac/Aac																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56490875	56490875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	105	440	0	ENST00000267101.3:c.2321T>C	p.Leu774Pro	p.L774P	ENST00000267101	NM_001982.3	774	cTg/cCg																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145108	58145108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	117	358	0	ENST00000257904.6:c.236C>T	p.Ala79Val	p.A79V	ENST00000257904	NM_000075.3	79	gCc/gTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112329	115112329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	15	100	0	ENST00000257566.3:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000257566	NM_016569.3	471	Cgc/Tgc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005402	29005402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	197	406	0	ENST00000282397.4:c.859T>C	p.Ser287Pro	p.S287P	ENST00000282397	NM_002019.4	287	Tcc/Ccc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346401	73346401	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs143362001		P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	198	351	1	ENST00000377767.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000377767	NM_014953.3	467	Cga/Tga																																																																														
CD276	80381	MSKCC	GRCh37	15	73994739	73994739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	79	526	1	ENST00000318443.5:c.223C>A	p.Leu75Met	p.L75M	ENST00000318443	NM_001024736.1	75	Ctg/Atg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56867238	56867238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	123	619	1	ENST00000308159.5:c.1457G>A	p.Arg486His	p.R486H	ENST00000308159	NM_014669.4	486	cGc/cAc																																																																														
CDH1	999	MSKCC	GRCh37	16	68855952	68855952	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	131	591	0	ENST00000261769.5:c.1760A>G	p.Asp587Gly	p.D587G	ENST00000261769	NM_004360.3	587	gAt/gGt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615698	1615698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	134	984	4	ENST00000344749.5:c.1573C>G	p.Arg525Gly	p.R525G	ENST00000344749	NM_001136139.2	525	Cgg/Ggg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273017	18273017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	117	486	0	ENST00000222254.8:c.907C>T	p.Pro303Ser	p.P303S	ENST00000222254	NM_005027.3	303	Ccg/Tcg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39935759	39935759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1257	261	814	1	ENST00000378444.4:c.113C>T	p.Ala38Val	p.A38V	ENST00000378444	NM_001123385.1	38	gCt/gTt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914632	39914632	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	256	711	0	ENST00000378444.4:c.4730del	p.Lys1577SerfsTer3	p.K1577Sfs*3	ENST00000378444	NM_001123385.1	1577	aAg/ag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157222626	157222631	+	inframe_deletion	In_Frame_Del	DEL	GTCCCA	GTCCCA	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	66	304	0	ENST00000346085.5:c.1900_1905del	p.Ser634_Gln635del	p.S634_Q635del	ENST00000346085	NM_020732.3	631	ccGTCCCAg/ccg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830551	72830551	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	200	900	1	ENST00000268489.5:c.6030del	p.Pro2011LeufsTer22	p.P2011Lfs*22	ENST00000268489	NM_006885.3	2010	ttT/tt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100260	157100260	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	57	131	0	ENST00000346085.5:c.1202del	p.Gly401AlafsTer29	p.G401Afs*29	ENST00000346085	NM_020732.3	399	gcG/gc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098363	11098363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	124	476	0	ENST00000344626.4:c.885del	p.Thr296ArgfsTer7	p.T296Rfs*7	ENST00000344626	NM_003072.3	294	gCc/gc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615692	1615692	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	135	978	0	ENST00000344749.5:c.1579delC	p.Arg527GlyfsTer16	p.R527Gfs*16	ENST00000344749	NM_001136139.2	527	Cgg/gg																																																																														
TP63	8626	MSKCC	GRCh37	3	189526209	189526210	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	114	546	0	ENST00000264731.3:c.480_481delTC	p.Pro161IlefsTer36	p.P161Ifs*36	ENST00000264731	NM_003722.4	158	gCT/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	43	330	0	ENST00000269305.4:c.517del	p.Val173Ter	p.V173*	ENST00000269305	NM_001126112.2	173	Gtg/tg																																																																														
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	142	448	1	ENST00000350721.4:c.5440delA	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	212	255	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0007740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	441	397	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528615	89528615	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	159	372	0	ENST00000336596.2:c.2915T>A	p.Leu972Gln	p.L972Q	ENST00000336596	NM_005233.5	972	cTa/cAa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374907	45374907	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	431	557	0	ENST00000262160.6:c.936C>G	p.Cys312Trp	p.C312W	ENST00000262160	NM_005901.5	312	tgC/tgG																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224452	123224452	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	507	720	0	ENST00000218089.9:c.3305T>A	p.Met1102Lys	p.M1102K	ENST00000218089	NM_001042749.1	1102	aTg/aAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092825	27092825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			805	97	358	0	ENST00000324856.7:c.2846C>T	p.Ser949Phe	p.S949F	ENST00000324856	NM_006015.4	949	tCc/tTc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46546314	46546314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			888	142	442	0	ENST00000262741.5:c.215G>A	p.Arg72Lys	p.R72K	ENST00000262741	NM_003629.3	72	aGg/aAg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076812	72076812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			874	116	430	0	ENST00000357731.5:c.685G>A	p.Glu229Lys	p.E229K	ENST00000357731	NM_173808.2	229	Gaa/Aaa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78433335	78433335	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			607	32	267	0	ENST00000370768.2:c.266T>A	p.Leu89Ter	p.L89*	ENST00000370768	NM_003902.3	89	tTa/tAa																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47613717	47613717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			807	55	428	0	ENST00000263735.4:c.910G>A	p.Glu304Lys	p.E304K	ENST00000263735	NM_002354.2	304	Gag/Aag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702212	47702212	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			851	63	439	0	ENST00000233146.2:c.1808A>G	p.Asp603Gly	p.D603G	ENST00000233146	NM_000251.2	603	gAt/gGt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248486	212248486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			912	56	477	1	ENST00000342788.4:c.3781G>A	p.Glu1261Lys	p.E1261K	ENST00000342788	NM_005235.2	1261	Gag/Aag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448571	89448571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	73	491	0	ENST00000336596.2:c.1535G>A	p.Arg512Gln	p.R512Q	ENST00000336596	NM_005233.5	512	cGa/cAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528553	89528553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			491	26	233	0	ENST00000336596.2:c.2853G>A	p.Met951Ile	p.M951I	ENST00000336596	NM_005233.5	951	atG/atA																																																																														
TP63	8626	MSKCC	GRCh37	3	189587175	189587175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			765	51	363	0	ENST00000264731.3:c.1192G>A	p.Asp398Asn	p.D398N	ENST00000264731	NM_003722.4	398	Gat/Aat																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808030	1808030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			593	38	349	1	ENST00000260795.2:c.2006G>A	p.Arg669Gln	p.R669Q	ENST00000260795		669	cGa/cAa																																																																														
SDHA	6389	MSKCC	GRCh37	5	223682	223682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs369321221		P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			744	46	397	0	ENST00000264932.6:c.149C>T	p.Ser50Phe	p.S50F	ENST00000264932	NM_004168.2	50	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			278	25	156	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38945123	38945123	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			856	66	351	0	ENST00000357387.3:c.4681A>C	p.Asn1561His	p.N1561H	ENST00000357387	NM_152756.3	1561	Aat/Cat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715890	117715890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			871	54	403	0	ENST00000368508.3:c.868G>A	p.Glu290Lys	p.E290K	ENST00000368508	NM_002944.2	290	Gaa/Aaa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729679	41729679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1452	83	913	0	ENST00000242208.4:c.850G>C	p.Glu284Gln	p.E284Q	ENST00000242208	NM_002192.2	284	Gaa/Caa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730099	41730099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1517	96	858	0	ENST00000242208.4:c.430G>A	p.Gly144Ser	p.G144S	ENST00000242208	NM_002192.2	144	Ggc/Agc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5029863	5029863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			765	47	414	0	ENST00000381652.3:c.307C>T	p.His103Tyr	p.H103Y	ENST00000381652	NM_004972.3	103	Cat/Tat																																																																														
RET	5979	MSKCC	GRCh37	10	43601906	43601906	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			806	59	465	0	ENST00000355710.3:c.950C>G	p.Thr317Arg	p.T317R	ENST00000355710	NM_020975.4	317	aCg/aGg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344279	118344279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			338	23	156	0	ENST00000534358.1:c.2405C>T	p.Ser802Phe	p.S802F	ENST00000534358	NM_005933.3	802	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373751	118373751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			559	45	316	0	ENST00000534358.1:c.7144C>T	p.Arg2382Ter	p.R2382*	ENST00000534358	NM_005933.3	2382	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658349	18658349	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			779	63	419	0	ENST00000266497.5:c.3154T>A	p.Phe1052Ile	p.F1052I	ENST00000266497		1052	Ttt/Att																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	89	500	1	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246350	46246350	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			733	59	341	0	ENST00000334344.6:c.4444C>T	p.Gln1482Ter	p.Q1482*	ENST00000334344	NM_152641.2	1482	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426423	49426423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	91	553	0	ENST00000301067.7:c.12065C>G	p.Thr4022Arg	p.T4022R	ENST00000301067	NM_003482.3	4022	aCg/aGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446388	49446389	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			774	42	383	0	ENST00000301067.7:c.1216_1217delinsTT	p.Pro406Phe	p.P406F	ENST00000301067	NM_003482.3	406	CCc/TTc																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869552	102869552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			453	32	212	0	ENST00000307046.8:c.89C>T	p.Ser30Leu	p.S30L	ENST00000307046	NM_001111285.1	30	tCg/tTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129658	2129658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			840	59	518	0	ENST00000219476.3:c.3385C>T	p.Arg1129Cys	p.R1129C	ENST00000219476	NM_000548.3	1129	Cgt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9927998	9927998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			814	63	382	0	ENST00000330684.3:c.1741C>T	p.Pro581Ser	p.P581S	ENST00000330684	NM_001134407.1	581	Cct/Tct																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348752	11348752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			651	59	371	0	ENST00000332029.2:c.584C>T	p.Pro195Leu	p.P195L	ENST00000332029	NM_003745.1	195	cCc/cTc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646434	23646434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			812	65	398	0	ENST00000261584.4:c.1433C>T	p.Ser478Phe	p.S478F	ENST00000261584	NM_024675.3	478	tCt/tTt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89337290	89337290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			747	65	414	0	ENST00000301030.4:c.7741C>T	p.Arg2581Cys	p.R2581C	ENST00000301030	NM_001256183.1	2581	Cgt/Tgt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350758	89350758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1761	129	1051	0	ENST00000301030.4:c.2192C>T	p.Ser731Phe	p.S731F	ENST00000301030	NM_001256183.1	731	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577594	7577594	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			447	57	246	0	ENST00000269305.4:c.687T>A	p.Cys229Ter	p.C229*	ENST00000269305	NM_001126112.2	229	tgT/tgA																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40368109	40368109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1168	145	703	0	ENST00000293328.3:c.1396G>A	p.Val466Met	p.V466M	ENST00000293328	NM_012448.3	466	Gtg/Atg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226925	2226926	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			386	25	173	0	ENST00000398665.3:c.4405_4406delinsTT	p.Pro1469Leu	p.P1469L	ENST00000398665	NM_032482.2	1469	CCg/TTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097626	11097627	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			955	84	583	1	ENST00000344626.4:c.806_807delinsTT	p.Pro269Leu	p.P269L	ENST00000344626	NM_003072.3	269	cCC/cTT																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14628998	14628998	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	83	648	0	ENST00000254322.2:c.164T>G	p.Leu55Arg	p.L55R	ENST00000254322	NM_006145.1	55	cTc/cGc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272342	15272342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			533	29	301	0	ENST00000263388.2:c.6097C>T	p.Pro2033Ser	p.P2033S	ENST00000263388	NM_000435.2	2033	Ccc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733295	40733295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			426	33	242	0	ENST00000373198.4:c.3511C>T	p.Pro1171Ser	p.P1171S	ENST00000373198	NM_133170.3	1171	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944415	40944415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			949	64	528	1	ENST00000373198.4:c.2087C>T	p.Ser696Phe	p.S696F	ENST00000373198	NM_133170.3	696	tCt/tTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076940	41076940	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			839	56	440	0	ENST00000373198.4:c.1480C>T	p.Gln494Ter	p.Q494*	ENST00000373198	NM_133170.3	494	Caa/Taa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164518	36164518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			433	49	230	0	ENST00000300305.3:c.1357G>A	p.Val453Met	p.V453M	ENST00000300305		453	Gtg/Atg																																																																														
ERG	2078	MSKCC	GRCh37	21	39775563	39775563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007810-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			632	63	360	0	ENST00000288319.7:c.457C>T	p.Pro153Ser	p.P153S	ENST00000288319	NM_182918.3	153	Cca/Tca																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	168	565	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	154	456	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112174720	112174720	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	98	416	0	ENST00000257430.4:c.3429T>G	p.Tyr1143Ter	p.Y1143*	ENST00000257430	NM_000038.5	1143	taT/taG																																																																														
APC	324	MSKCC	GRCh37	5	112175447	112175447	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	50	373	0	ENST00000257430.4:c.4156A>T	p.Arg1386Ter	p.R1386*	ENST00000257430	NM_000038.5	1386	Aga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108235939	108235939	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	30	350	0	ENST00000278616.4:c.8981A>G	p.Asn2994Ser	p.N2994S	ENST00000278616	NM_000051.3	2994	aAt/aGt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867334	45867334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	64	204	0	ENST00000391945.4:c.859C>T	p.Arg287Cys	p.R287C	ENST00000391945	NM_000400.3	287	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713386	40713386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	61	451	3	ENST00000373198.4:c.4129C>T	p.Arg1377Ter	p.R1377*	ENST00000373198	NM_133170.3	1377	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41573381	41573381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	28	564	1	ENST00000263253.7:c.5666G>T	p.Arg1889Met	p.R1889M	ENST00000263253	NM_001429.3	1889	aGg/aTg																																																																														
MAX	4149	MSKCC	GRCh37	14	65560500	65560500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	299	421	0	ENST00000358664.4:c.97C>T	p.Arg33Ter	p.R33*	ENST00000358664	NM_002382.4	33	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	417	349	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463289	25463289	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs147828672		P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	104	303	0	ENST00000264709.3:c.2204A>G	p.Tyr735Cys	p.Y735C	ENST00000264709	NM_175629.2	735	tAc/tGc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873421	136873421	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	148	668	1	ENST00000241393.3:c.77A>T	p.Glu26Val	p.E26V	ENST00000241393	NM_003467.2	26	gAa/gTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542681	187542681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	321	488	0	ENST00000441802.2:c.5059G>T	p.Gly1687Trp	p.G1687W	ENST00000441802	NM_005245.3	1687	Ggg/Tgg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056437	26056437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	58	197	0	ENST00000343677.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000343677	NM_005319.3	74	Gag/Aag																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540386	23540386	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	48	86	0	ENST00000380871.4:c.17A>T	p.Glu6Val	p.E6V	ENST00000380871	NM_006167.3	6	gAg/gTg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891211	101891211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	121	416	0	ENST00000374994.4:c.172G>T	p.Val58Phe	p.V58F	ENST00000374994	NM_004612.2	58	Gtc/Ttc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391998	139391998	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	59	309	0	ENST00000277541.6:c.6193C>G	p.Leu2065Val	p.L2065V	ENST00000277541	NM_017617.3	2065	Ctg/Gtg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041209	47041285	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTCTGCTCTCCCACCGGCTACCAGCCCCACTGCCCAGGAATCCTACAGCCAGTACCGTGAGTAGCCACAGCCTGTG	GTTCTGCTCTCCCACCGGCTACCAGCCCCACTGCCCAGGAATCCTACAGCCAGTACCGTGAGTAGCCACAGCCTGTG	-			P-0007879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	267	564	0	ENST00000329236.7:c.1404_1459+21del		p.X468_splice	ENST00000329236	NM_001204466.1	468																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	619	436	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	216	473	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937887	36937887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	291	611	0	ENST00000361632.4:c.949C>A	p.His317Asn	p.H317N	ENST00000361632		317	Cac/Aac																																																																														
MPL	4352	MSKCC	GRCh37	1	43804274	43804274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	252	515	0	ENST00000372470.3:c.274G>A	p.Val92Met	p.V92M	ENST00000372470	NM_005373.2	92	Gtg/Atg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267681	198267681	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	159	409	0	ENST00000335508.6:c.1798T>A	p.Leu600Met	p.L600M	ENST00000335508	NM_012433.2	600	Ttg/Atg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032541	12032541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	483	310	0	ENST00000353533.5:c.977C>T	p.Pro326Leu	p.P326L	ENST00000353533	NM_003010.3	326	cCg/cTg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371784	45371784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	229	488	0	ENST00000262160.6:c.1207G>A	p.Glu403Lys	p.E403K	ENST00000262160	NM_005901.5	403	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757428	40757428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1856	230	481	1	ENST00000373198.4:c.2870C>T	p.Pro957Leu	p.P957L	ENST00000373198	NM_133170.3	957	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175472	112175472	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	404	398	0	ENST00000257430.4:c.4181del	p.Asp1394ValfsTer21	p.D1394Vfs*21	ENST00000257430	NM_000038.5	1394	gAt/gt																																																																														
MED12	9968	MSKCC	GRCh37	X	70354667	70354667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	135	617	0	ENST00000374080.3:c.4832G>A	p.Arg1611His	p.R1611H	ENST00000374080		1611	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576888	7576889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	97	419	0	ENST00000269305.4:c.957_958insT	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	319	-/T																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952149	178952150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTT			P-0007926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	102	221	0	ENST00000263967.3:c.3205_3206insTTTT	p.Ter1069PhefsTer5	p.*1069Ffs*5	ENST00000263967	NM_006218.2	1068	-/TTTT																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0007976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	508	529	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
KIT	3815	MSKCC	GRCh37	4	55599341	55599341	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	335	389	0	ENST00000288135.5:c.2467T>G	p.Tyr823Asp	p.Y823D	ENST00000288135	NM_000222.2	823	Tat/Gat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			366	177	297	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			318	289	334	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			484	209	288	2	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			493	177	286	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			326	167	295	0	ENST00000269305.4:c.392A>G	p.Asn131Ser	p.N131S	ENST00000269305	NM_001126112.2	131	aAc/aGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100976	27100976	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			386	142	306	0	ENST00000324856.7:c.4258C>T	p.Gln1420Ter	p.Q1420*	ENST00000324856	NM_006015.4	1420	Cag/Tag																																																																														
SRC	6714	MSKCC	GRCh37	20	36026147	36026147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008022-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			538	515	406	0	ENST00000358208.4:c.749C>T	p.Thr250Met	p.T250M	ENST00000358208		250	aCg/aTg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750778	57750778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008162-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			854	53	793	0	ENST00000274289.3:c.1826A>G	p.Asp609Gly	p.D609G	ENST00000274289	NM_006622.3	609	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	337	493	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
MITF	4286	MSKCC	GRCh37	3	70014097	70014097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	231	802	0	ENST00000352241.4:c.1261G>A	p.Val421Ile	p.V421I	ENST00000352241	NM_198159.2	421	Gtt/Att																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710666	114710666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	436	763	0	ENST00000543371.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000543371	NM_001198531.1	51	Gaa/Taa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2221281	2221281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	317	502	3	ENST00000326181.6:c.365C>T	p.Ala122Val	p.A122V	ENST00000326181	NM_032271.2	122	gCg/gTg																																																																														
AR	367	MSKCC	GRCh37	X	66941679	66941679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	446	403	0	ENST00000374690.3:c.2323C>T	p.Arg775Cys	p.R775C	ENST00000374690	NM_000044.3	775	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578266	7578267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	323	523	0	ENST00000269305.4:c.582dup	p.Ile195TyrfsTer14	p.I195Yfs*14	ENST00000269305	NM_001126112.2	194	-/T																																																																														
APC	324	MSKCC	GRCh37	5	112175213	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	137	247	0	ENST00000257430.4:c.3925_3928del	p.Glu1309ArgfsTer11	p.E1309Rfs*11	ENST00000257430	NM_000038.5	1308	AAAGaa/aa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591894	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0008308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	456	630	0	ENST00000342988.3:c.1055_1057del	p.Gly352_Tyr353delinsAsp	p.G352_Y353delinsD	ENST00000342988	NM_005359.5	352	gGATac/gac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			105	70	226	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			84	40	261	0	ENST00000342988.3:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000342988	NM_005359.5	537	Gac/Tac																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682869	190682869	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			156	43	227	0	ENST00000441310.2:c.545T>G	p.Leu182Arg	p.L182R	ENST00000441310	NM_000534.4	182	cTt/cGt																																																																														
INHA	3623	MSKCC	GRCh37	2	220437275	220437275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			200	51	455	1	ENST00000243786.2:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000243786	NM_002191.3	60	cGa/cAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66233142	66233142	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			126	49	282	0	ENST00000273854.3:c.1857G>A	p.Trp619Ter	p.W619*	ENST00000273854	NM_004439.5	619	tgG/tgA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484372	8484372	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			97	26	194	0	ENST00000356435.5:c.3160T>C	p.Tyr1054His	p.Y1054H	ENST00000356435		1054	Tat/Cat																																																																														
POLE	5426	MSKCC	GRCh37	12	133201369	133201369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			87	38	289	0	ENST00000320574.5:c.6775C>T	p.Arg2259Trp	p.R2259W	ENST00000320574	NM_006231.2	2259	Cgg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29677306	29677306	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			64	44	270	0	ENST00000358273.4:c.7427A>T	p.Tyr2476Phe	p.Y2476F	ENST00000358273	NM_001042492.2	2476	tAt/tTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435815	56435815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			34	31	168	0	ENST00000407977.2:c.1322delC	p.Pro441LeufsTer61	p.P441Lfs*61	ENST00000407977		441	cCt/ct																																																																														
DIS3	22894	MSKCC	GRCh37	13	73342922	73342923	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	CCT			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			177	61	283	0	ENST00000377767.4:c.1881_1883dup	p.Gly628dup	p.G628dup	ENST00000377767	NM_014953.3	628	ggg/ggAGGg																																																																														
PARP1	142	MSKCC	GRCh37	1	226570841	226570841	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			132	10	230	0	ENST00000366794.5:c.1055A>C	p.Lys352Thr	p.K352T	ENST00000366794	NM_001618.3	352	aAa/aCa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522403	157522403	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			142	11	263	0	ENST00000346085.5:c.4675T>G	p.Phe1559Val	p.F1559V	ENST00000346085	NM_020732.3	1559	Ttc/Gtc																																																																														
CCND1	595	MSKCC	GRCh37	11	69456108	69456108	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			113	10	281	0	ENST00000227507.2:c.27A>T	p.Glu9Asp	p.E9D	ENST00000227507	NM_053056.2	9	gaA/gaT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350338	89350338	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008350-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			202	19	551	0	ENST00000301030.4:c.2612A>C	p.Asp871Ala	p.D871A	ENST00000301030	NM_001256183.1	871	gAc/gCc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120461135	120461135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			163	26	300	0	ENST00000256646.2:c.5823G>A	p.Met1941Ile	p.M1941I	ENST00000256646	NM_024408.3	1941	atG/atA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			94	11	309	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845956	151845956	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			113	34	389	0	ENST00000262189.6:c.13056G>A	p.Trp4352Ter	p.W4352*	ENST00000262189	NM_170606.2	4352	tgG/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			91	14	343	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			270	79	257	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435549	56435549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			343	59	424	1	ENST00000407977.2:c.1588C>T	p.Pro530Ser	p.P530S	ENST00000407977		530	Cct/Tct																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715688	30715689	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008458-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			117	22	295	0	ENST00000359013.4:c.1421_1422insT	p.Met475HisfsTer13	p.M475Hfs*13	ENST00000359013	NM_001024847.2	474	tcc/tcTc																																																																														
VHL	7428	MSKCC	GRCh37	3	10188309	10188309	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008459-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			471	234	363	0	ENST00000256474.2:c.452T>G	p.Ile151Ser	p.I151S	ENST00000256474	NM_000551.3	151	aTc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008464-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			540	14	297	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008464-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			441	113	295	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008464-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			433	23	235	0	ENST00000349496.5:c.1161T>A	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaA																																																																														
AKT3	10000	MSKCC	GRCh37	1	243809240	243809240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1460	97	641	0	ENST00000263826.5:c.384A>G	p.Ile128Met	p.I128M	ENST00000263826	NM_005465.4	128	atA/atG																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543861	212543861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			876	55	380	0	ENST00000342788.4:c.1538G>T	p.Trp513Leu	p.W513L	ENST00000342788	NM_005235.2	513	tGg/tTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576787	212576787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			934	158	441	1	ENST00000342788.4:c.1112C>A	p.Thr371Asn	p.T371N	ENST00000342788	NM_005235.2	371	aCt/aAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498373	89498373	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			498	75	307	0	ENST00000336596.2:c.2347-2A>T		p.X783_splice	ENST00000336596	NM_005233.5	783																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670841	134670841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			335	31	176	0	ENST00000398015.3:c.752G>T	p.Gly251Val	p.G251V	ENST00000398015	NM_004441.4	251	gGg/gTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825298	134825298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			719	65	368	0	ENST00000398015.3:c.814G>C	p.Ala272Pro	p.A272P	ENST00000398015	NM_004441.4	272	Gca/Cca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919111	178919111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			694	53	302	0	ENST00000263967.3:c.596C>G	p.Ser199Cys	p.S199C	ENST00000263967	NM_006218.2	199	tCt/tGt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151593	55151593	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	81	544	0	ENST00000257290.5:c.2379G>C	p.Leu793Phe	p.L793F	ENST00000257290	NM_006206.4	793	ttG/ttC																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007355	143007355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			763	177	369	0	ENST00000262992.4:c.2429T>A	p.Leu810His	p.L810H	ENST00000262992	NM_001101669.1	810	cTt/cAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517745	187517745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			358	103	210	0	ENST00000441802.2:c.12949C>A	p.Pro4317Thr	p.P4317T	ENST00000441802	NM_005245.3	4317	Cct/Act																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			446	62	326	0				ENST00000310581	NM_198253.2																																																																																
ARID1B	57492	MSKCC	GRCh37	6	157470075	157470075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			210	21	102	0	ENST00000346085.5:c.2869G>T	p.Ala957Ser	p.A957S	ENST00000346085	NM_020732.3	957	Gca/Tca																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467792	50467792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			786	61	474	1	ENST00000331340.3:c.1027G>T	p.Val343Phe	p.V343F	ENST00000331340	NM_006060.4	343	Gtc/Ttc																																																																														
HGF	3082	MSKCC	GRCh37	7	81335070	81335070	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			607	38	259	0	ENST00000222390.5:c.1758-1G>C		p.X586_splice	ENST00000222390	NM_000601.4	586																																																																															
MET	4233	MSKCC	GRCh37	7	116339283	116339283	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1447	99	544	0	ENST00000397752.3:c.145G>T	p.Glu49Ter	p.E49*	ENST00000397752	NM_000245.2	49	Gaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8436685	8436685	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			756	59	367	0	ENST00000356435.5:c.3993G>C	p.Met1331Ile	p.M1331I	ENST00000356435		1331	atG/atC																																																																														
TSC1	7248	MSKCC	GRCh37	9	135780996	135780996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1403	428	862	0	ENST00000298552.3:c.1969G>T	p.Ala657Ser	p.A657S	ENST00000298552	NM_001162426.1	657	Gca/Tca																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100747	8100748	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			684	106	326	0	ENST00000346208.3:c.721_722delinsTT	p.Gly241Phe	p.G241F	ENST00000346208		241	GGc/TTc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77066737	77066737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	173	558	0	ENST00000356341.3:c.748G>C	p.Asp250His	p.D250H	ENST00000356341	NM_002576.4	250	Gat/Cat																																																																														
YAP1	10413	MSKCC	GRCh37	11	102076656	102076656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			494	185	303	0	ENST00000282441.5:c.835G>T	p.Val279Leu	p.V279L	ENST00000282441	NM_001130145.2	279	Gtg/Ttg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			677	226	402	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885884	111885884	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1703	149	825	1	ENST00000341259.2:c.1506T>A	p.Ser502Arg	p.S502R	ENST00000341259	NM_005475.2	502	agT/agA																																																																														
POLE	5426	MSKCC	GRCh37	12	133202738	133202738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			835	191	543	0	ENST00000320574.5:c.6496G>T	p.Asp2166Tyr	p.D2166Y	ENST00000320574	NM_006231.2	2166	Gac/Tac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608451	28608451	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			838	64	448	0	ENST00000241453.7:c.1691A>T	p.His564Leu	p.H564L	ENST00000241453	NM_004119.2	564	cAc/cTc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			791	144	412	0	ENST00000377767.4:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000377767	NM_014953.3	479	Gac/Tac																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103520576	103520576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			944	135	513	0	ENST00000355739.4:c.2647G>T	p.Gly883Trp	p.G883W	ENST00000355739	NM_000123.3	883	Ggg/Tgg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576175	88576175	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			770	58	383	1	ENST00000360948.2:c.1498A>T	p.Thr500Ser	p.T500S	ENST00000360948	NM_001012338.2	500	Act/Tct																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680705	88680705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			972	73	505	0	ENST00000360948.2:c.552C>A	p.Ser184Arg	p.S184R	ENST00000360948	NM_001012338.2	184	agC/agA																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726685	88726685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			711	57	406	0	ENST00000360948.2:c.359C>A	p.Pro120His	p.P120H	ENST00000360948	NM_001012338.2	120	cCc/cAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943749	9943749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			544	114	368	0	ENST00000330684.3:c.1192G>T	p.Asp398Tyr	p.D398Y	ENST00000330684	NM_001134407.1	398	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			634	154	401	1	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016579	12016579	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			731	140	390	0	ENST00000353533.5:c.715A>T	p.Arg239Ter	p.R239*	ENST00000353533	NM_003010.3	239	Aga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29562942	29562942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	185	550	3	ENST00000358273.4:c.3877G>T	p.Gly1293Cys	p.G1293C	ENST00000358273	NM_001042492.2	1293	Ggt/Tgt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41222955	41222955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1292	233	673	0	ENST00000357654.3:c.4976C>T	p.Pro1659Leu	p.P1659L	ENST00000357654	NM_007294.3	1659	cCa/cTa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243818	41243818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			724	131	385	0	ENST00000357654.3:c.3730C>T	p.His1244Tyr	p.H1244Y	ENST00000357654	NM_007294.3	1244	Cat/Tat																																																																														
STAG2	10735	MSKCC	GRCh37	X	123190081	123190081	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			640	71	280	0	ENST00000218089.9:c.1300A>C	p.Lys434Gln	p.K434Q	ENST00000218089	NM_001042749.1	434	Aaa/Caa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578336	212578336	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			851	61	389	0	ENST00000342788.4:c.921del	p.Cys308AlafsTer8	p.C308Afs*8	ENST00000342788	NM_005235.2	307	gcC/gc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907073	101907073	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008465-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			709	148	383	0	ENST00000374994.4:c.1034del	p.Gly345GlufsTer8	p.G345Efs*8	ENST00000374994	NM_004612.2	345	Gga/ga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0008481-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			70	39	121	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
CDH1	999	MSKCC	GRCh37	16	68842693	68842693	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008481-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			165	129	635	0	ENST00000261769.5:c.631del	p.Thr211GlnfsTer4	p.T211Qfs*4	ENST00000261769	NM_004360.3	210	gAa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			485	85	203	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
INHA	3623	MSKCC	GRCh37	2	220440222	220440222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	281	589	1	ENST00000243786.2:c.1075C>A	p.Leu359Ile	p.L359I	ENST00000243786	NM_002191.3	359	Ctc/Atc																																																																														
TERT	7015	MSKCC	GRCh37	5	1272334	1272334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			705	186	368	0	ENST00000310581.5:c.2348C>A	p.Thr783Asn	p.T783N	ENST00000310581	NM_198253.2	783	aCc/aAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3799652	3799652	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	69	429	0	ENST00000262367.5:c.3812A>G	p.Lys1271Arg	p.K1271R	ENST00000262367	NM_004380.2	1271	aAa/aGa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867270	45867270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			451	65	175	2	ENST00000391945.4:c.923C>A	p.Pro308His	p.P308H	ENST00000391945	NM_000400.3	308	cCc/cAc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841228	15841228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			851	207	373	0	ENST00000307771.7:c.1312G>T	p.Gly438Cys	p.G438C	ENST00000307771	NM_005089.3	438	Ggc/Tgc																																																																														
ATR	545	MSKCC	GRCh37	3	142268448	142268448	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			817	48	253	0	ENST00000350721.4:c.3044G>C	p.Arg1015Pro	p.R1015P	ENST00000350721	NM_001184.3	1015	cGa/cCa																																																																														
KDR	3791	MSKCC	GRCh37	4	55968577	55968577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008488-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	70	354	0	ENST00000263923.4:c.2086C>A	p.Pro696Thr	p.P696T	ENST00000263923	NM_002253.2	696	Cca/Aca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008492-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			263	70	252	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815564	139815564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008492-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1735	353	606	0	ENST00000247668.2:c.1035G>A	p.Met345Ile	p.M345I	ENST00000247668	NM_021138.3	345	atG/atA																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815568	139815568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008492-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1739	343	582	2	ENST00000247668.2:c.1039G>A	p.Ala347Thr	p.A347T	ENST00000247668	NM_021138.3	347	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008536-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			232	272	301	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591891	48591891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936394		P-0008536-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			264	159	542	0	ENST00000342988.3:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000342988	NM_005359.5	352	Gga/Aga																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317147	87317147	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008536-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			388	84	370	1	ENST00000277120.3:c.286C>A	p.Leu96Met	p.L96M	ENST00000277120		96	Ctg/Atg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557725	21557725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008536-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			652	160	516	1	ENST00000382592.4:c.2120G>A	p.Arg707Gln	p.R707Q	ENST00000382592	NM_014572.2	707	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993250	72993250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008536-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			655	244	751	2	ENST00000268489.5:c.795C>A	p.Asp265Glu	p.D265E	ENST00000268489	NM_006885.3	265	gaC/gaA																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200072	138200072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008544-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			389	25	198	0	ENST00000237289.4:c.1490G>T	p.Arg497Leu	p.R497L	ENST00000237289	NM_001270507.1	497	cGt/cTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008549-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			712	312	460	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193121548	193121548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008549-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	133	499	0	ENST00000367435.3:c.946C>T	p.His316Tyr	p.H316Y	ENST00000367435	NM_024529.4	316	Cat/Tat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184592	11184592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008549-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			859	273	567	0	ENST00000361445.4:c.6625C>G	p.Leu2209Val	p.L2209V	ENST00000361445	NM_004958.3	2209	Ctg/Gtg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409016	139409016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008558-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			502	472	550	0	ENST00000277541.6:c.2153A>G	p.Asn718Ser	p.N718S	ENST00000277541	NM_017617.3	718	aAt/aGt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396806	396806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008558-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			577	494	530	0	ENST00000262320.3:c.220G>A	p.Gly74Ser	p.G74S	ENST00000262320	NM_003502.3	74	Ggc/Agc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2215919	2215919	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008558-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	389	943	0	ENST00000326181.6:c.121G>T	p.Val41Phe	p.V41F	ENST00000326181	NM_032271.2	41	Gtc/Ttc																																																																														
INSR	3643	MSKCC	GRCh37	19	7141814	7141814	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008558-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			287	712	551	0	ENST00000302850.5:c.2556C>G	p.Asp852Glu	p.D852E	ENST00000302850	NM_000208.2	852	gaC/gaG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578371	7578382	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CATCGCTATCTG	CATCGCTATCTG	-			P-0008558-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			163	340	312	0	ENST00000269305.4:c.548_559del	p.Ser183_Gly187delinsCys	p.S183_G187delinsC	ENST00000269305	NM_001126112.2	183	tCAGATAGCGATGgt/tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	48916774	48916775	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0008558-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			192	309	586	0	ENST00000267163.4:c.305_306del	p.Cys102TyrfsTer7	p.C102Yfs*7	ENST00000267163	NM_000321.2	102	TGt/t																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008679-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			515	368	346	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008679-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			436	365	306	0	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121437431	121437431	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0008679-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			316	252	166	0	ENST00000257555.6:c.1768+1G>A		p.X590_splice	ENST00000257555		590																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008761-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			519	640	719	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008761-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			735	393	758	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
ALK	238	MSKCC	GRCh37	2	29416767	29416767	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201768549		P-0008761-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			366	279	384	0	ENST00000389048.3:c.4186G>A	p.Ala1396Thr	p.A1396T	ENST00000389048	NM_004304.4	1396	Gct/Act																																																																														
MET	4233	MSKCC	GRCh37	7	116418847	116418847	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008761-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			935	321	707	1	ENST00000397752.3:c.3358G>T	p.Glu1120Ter	p.E1120*	ENST00000397752	NM_000245.2	1120	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954283	32954283	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0008769-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			364	129	404	0	ENST00000380152.3:c.9256+1G>C		p.X3086_splice	ENST00000380152		3086																																																																															
BLM	641	MSKCC	GRCh37	15	91312710	91312725	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCGCCAGAAGTTTC	CTTCGCCAGAAGTTTC	-			P-0008769-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			704	193	522	0	ENST00000355112.3:c.2453_2468del	p.Arg818LeufsTer4	p.R818Lfs*4	ENST00000355112	NM_000057.2	817	CTTCGCCAGAAGTTTCct/ct																																																																														
CBL	867	MSKCC	GRCh37	11	119155712	119155712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008769-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			728	83	576	0	ENST00000264033.4:c.1465C>T	p.Pro489Ser	p.P489S	ENST00000264033	NM_005188.3	489	Cca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49449085	49449103	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCCAGCTTCTGGCTGT	CCAGCCAGCTTCTGGCTGT	-			P-0008769-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			669	109	452	0	ENST00000301067.7:c.5_23del	p.Asp2ValfsTer122	p.D2Vfs*122	ENST00000301067	NM_003482.3	2	gACAGCCAGAAGCTGGCTGGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009159-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			521	48	202	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
RHOA	387	MSKCC	GRCh37	3	49405932	49405932	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009159-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1295	144	554	0	ENST00000418115.1:c.206T>G	p.Leu69Arg	p.L69R	ENST00000418115	NM_001664.2	69	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1282	199	579	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509312	106509312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	84	404	0	ENST00000359195.3:c.1306G>T	p.Gly436Cys	p.G436C	ENST00000359195	NM_002649.2	436	Ggt/Tgt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691905	30691905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	85	335	0	ENST00000359013.4:c.482G>A	p.Cys161Tyr	p.C161Y	ENST00000359013	NM_001024847.2	161	tGt/tAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356152	66356152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	57	449	0	ENST00000273854.3:c.1345G>A	p.Asp449Asn	p.D449N	ENST00000273854	NM_004439.5	449	Gac/Aac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361223	66361223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	55	349	0	ENST00000273854.3:c.949C>A	p.Gln317Lys	p.Q317K	ENST00000273854	NM_004439.5	317	Cag/Aag																																																																														
RAB35	11021	MSKCC	GRCh37	12	120541733	120541733	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1572	194	680	0	ENST00000229340.5:c.124G>T	p.Gly42Ter	p.G42*	ENST00000229340	NM_006861.6	42	Gga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984514	72984514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1626	91	769	0	ENST00000268489.5:c.3070G>T	p.Ala1024Ser	p.A1024S	ENST00000268489	NM_006885.3	1024	Gcc/Tcc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602582	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0009214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	109	323	0	ENST00000171111.5:c.996_997del	p.Gly333LeufsTer16	p.G333Lfs*16	ENST00000171111	NM_203500.1	332	ggCGgc/gggc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			503	85	390	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			727	225	464	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			445	81	263	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653807	89653807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			283	70	356	0	ENST00000371953.3:c.105G>A	p.Met35Ile	p.M35I	ENST00000371953	NM_000314.4	35	atG/atA																																																																														
REL	5966	MSKCC	GRCh37	2	61145742	61145742	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			285	44	216	0	ENST00000295025.8:c.853+1G>A		p.X285_splice	ENST00000295025	NM_002908.2	285																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412323	63412323	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			235	101	285	0	ENST00000330258.3:c.844G>T	p.Glu282Ter	p.E282*	ENST00000330258	NM_152424.3	282	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112170768	112170769	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0009224-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			722	54	517	0	ENST00000257430.4:c.1865dup	p.Tyr622Ter	p.Y622*	ENST00000257430	NM_000038.5	622	tac/tAac																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152102	55152104	+	missense_variant	Missense_Mutation	ONP	ATG	ATG	CTA			P-0009250-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			569	256	419	0	ENST00000257290.5:c.2534_2536delinsCTA	p.His845_Asp846delinsProAsn	p.H845_D846delinsPN	ENST00000257290	NM_006206.4	845	cATGat/cCTAat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			248	223	178	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			336	549	426	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827993	40827993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			256	146	212	0	ENST00000373198.4:c.2435G>A	p.Gly812Glu	p.G812E	ENST00000373198	NM_133170.3	812	gGa/gAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630411	187630411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			686	298	367	0	ENST00000441802.2:c.571C>T	p.Arg191Ter	p.R191*	ENST00000441802	NM_005245.3	191	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468149	120468149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			363	152	194	0	ENST00000256646.2:c.4290T>G	p.Cys1430Trp	p.C1430W	ENST00000256646	NM_024408.3	1430	tgT/tgG																																																																														
AKT3	10000	MSKCC	GRCh37	1	243675697	243675697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			447	237	312	0	ENST00000263826.5:c.1283C>T	p.Ser428Phe	p.S428F	ENST00000263826	NM_005465.4	428	tCt/tTt																																																																														
ALK	238	MSKCC	GRCh37	2	29456506	29456506	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			574	359	503	0	ENST00000389048.3:c.2412A>T	p.Glu804Asp	p.E804D	ENST00000389048	NM_004304.4	804	gaA/gaT																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1795734	1795734	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			276	112	178	0	ENST00000260795.2:c.73T>A	p.Leu25Met	p.L25M	ENST00000260795		25	Ttg/Atg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467472	66467472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			321	147	260	0	ENST00000273854.3:c.797C>T	p.Ser266Phe	p.S266F	ENST00000273854	NM_004439.5	266	tCt/tTt																																																																														
IRF4	3662	MSKCC	GRCh37	6	397225	397225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			354	175	252	0	ENST00000380956.4:c.610C>T	p.His204Tyr	p.H204Y	ENST00000380956	NM_001195286.1	204	Cac/Tac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964390	93964390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			706	322	492	0	ENST00000369303.4:c.2507C>T	p.Pro836Leu	p.P836L	ENST00000369303	NM_004440.3	836	cCt/cTt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964510	93964510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			529	243	370	0	ENST00000369303.4:c.2387G>A	p.Gly796Glu	p.G796E	ENST00000369303	NM_004440.3	796	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715868	117715868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			603	300	410	1	ENST00000368508.3:c.890G>A	p.Arg297Lys	p.R297K	ENST00000368508	NM_002944.2	297	aGa/aAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974703	21974703	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			253	194	300	0	ENST00000304494.5:c.124A>T	p.Asn42Tyr	p.N42Y	ENST00000304494	NM_000077.4	42	Aat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974703	21974703	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			253	194	300	0	ENST00000304494.5:c.124A>T	p.Asn42Tyr	p.N42Y	ENST00000304494	NM_000077.4	42	Aat/Tat																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137029	64137029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			282	171	187	0	ENST00000334205.4:c.1540G>T	p.Val514Leu	p.V514L	ENST00000334205	NM_003942.2	514	Gtg/Ttg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375564	118375564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			343	181	221	0	ENST00000534358.1:c.8957C>A	p.Pro2986Gln	p.P2986Q	ENST00000534358	NM_005933.3	2986	cCa/cAa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78829331	78829331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			385	185	266	1	ENST00000306801.3:c.1382C>T	p.Pro461Leu	p.P461L	ENST00000306801	NM_020761.2	461	cCc/cTc																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309610	30309610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			618	342	344	0	ENST00000307677.4:c.412G>A	p.Gly138Ser	p.G138S	ENST00000307677	NM_138578.1	138	Ggt/Agt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021623	31021627	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTT	GGCTT	-			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			264	129	207	1	ENST00000375687.4:c.1623_1627del	p.Leu542ArgfsTer7	p.L542Rfs*7	ENST00000375687	NM_015338.5	541	cGGCTT/c																																																																														
EED	8726	MSKCC	GRCh37	11	85977143	85977166	+	inframe_deletion	In_Frame_Del	DEL	GAAAAAATAATGTCCTGTGGTATG	GAAAAAATAATGTCCTGTGGTATG	-			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			533	59	336	0	ENST00000263360.6:c.747_770del	p.Glu249_Met256del	p.E249_M256del	ENST00000263360	NM_003797.3	249	GAAAAAATAATGTCCTGTGGTATG/-																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402447	139402448	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			557	251	355	1	ENST00000277541.6:c.3469_3470delinsAA	p.Gly1157Lys	p.G1157K	ENST00000277541	NM_017617.3	1157	GGg/AAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412266	139412267	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			539	222	280	0	ENST00000277541.6:c.1378_1379delinsTT	p.Pro460Leu	p.P460L	ENST00000277541	NM_017617.3	460	CCg/TTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3831219	3831220	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009324-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			277	259	298	0	ENST00000262367.5:c.1661_1662delinsTT	p.Ser554Phe	p.S554F	ENST00000262367	NM_004380.2	554	tCC/tTT																																																																														
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009402-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			778	332	307	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061231	+	inframe_deletion	In_Frame_Del	DEL	TCTCGAACA	TCTCGAACA	-			P-0009402-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	228	505	0	ENST00000250448.2:c.758_766del	p.Met253_Glu255del	p.M253_E255del	ENST00000250448	NM_004496.3	253	aTGTTCGAGAac/aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828767	72828767	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009402-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	203	595	0	ENST00000268489.5:c.7814C>G	p.Ser2605Ter	p.S2605*	ENST00000268489	NM_006885.3	2605	tCa/tGa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619370	37619370	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0009402-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			261	125	286	0	ENST00000447079.4:c.1046+1del		p.S349fs	ENST00000447079	NM_015083.1	349	aGt/at																																																																														
CDK12	51755	MSKCC	GRCh37	17	37665974	37665975	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0009402-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	123	426	0	ENST00000447079.4:c.2626_2627delinsTT	p.Ala876Leu	p.A876L	ENST00000447079	NM_015083.1	876	GCa/TTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	216	418	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0009741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	314	472	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584497	48584497	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0009741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	189	262	1	ENST00000342988.3:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000342988	NM_005359.5	224	Cag/Tag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943724	17943724	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	36	261	0	ENST00000458235.1:c.2365T>G	p.Ser789Ala	p.S789A	ENST00000458235	NM_000215.3	789	Tca/Gca																																																																														
CCND2	894	MSKCC	GRCh37	12	4409115	4409122	+	frameshift_variant	Frame_Shift_Del	DEL	GTCGGAGG	GTCGGAGG	-			P-0009741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	181	455	1	ENST00000261254.3:c.810_817del	p.Ser271Ter	p.S271*	ENST00000261254	NM_001759.3	270	aaGTCGGAGGat/aaat																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120007	70120007	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	60	44	0	ENST00000245479.2:c.1009del	p.Ser337ProfsTer46	p.S337Pfs*46	ENST00000245479	NM_000346.3	337	Tcc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	140	575	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	88	444	1	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0010074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	55	482	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
RET	5979	MSKCC	GRCh37	10	43572717	43572717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	64	201	0	ENST00000355710.3:c.11C>A	p.Ala4Glu	p.A4E	ENST00000355710	NM_020975.4	4	gCg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	32	128	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	109	320	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																														
CDK6	1021	MSKCC	GRCh37	7	92462418	92462418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	55	329	0	ENST00000265734.4:c.220C>T	p.Pro74Ser	p.P74S	ENST00000265734	NM_001259.6	74	Ccc/Tcc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939103	36939103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1435	208	680	0	ENST00000361632.4:c.606G>T	p.Trp202Cys	p.W202C	ENST00000361632		202	tgG/tgT																																																																														
MYCL	4610	MSKCC	GRCh37	1	40367115	40367115	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	81	360	0	ENST00000397332.2:c.82G>A	p.Gly28Arg	p.G28R	ENST00000397332	NM_001033082.2	28	Gga/Aga																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429324	78429324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	55	378	1	ENST00000370768.2:c.1118C>T	p.Pro373Leu	p.P373L	ENST00000370768	NM_003902.3	373	cCt/cTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212587235	212587235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	45	342	0	ENST00000342788.4:c.766G>T	p.Gly256Ter	p.G256*	ENST00000342788	NM_005235.2	256	Gga/Tga																																																																														
BARD1	580	MSKCC	GRCh37	2	215645456	215645456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	95	687	0	ENST00000260947.4:c.1142G>A	p.Ser381Asn	p.S381N	ENST00000260947	NM_000465.2	381	aGt/aAt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442502	52442502	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	33	136	0	ENST00000460680.1:c.243C>G	p.Phe81Leu	p.F81L	ENST00000460680	NM_004656.3	81	ttC/ttG																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541364	187541364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	49	376	0	ENST00000441802.2:c.6376C>A	p.His2126Asn	p.H2126N	ENST00000441802	NM_005245.3	2126	Cac/Aac																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876278	35876278	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	40	292	0	ENST00000303115.3:c.1070C>G	p.Thr357Ser	p.T357S	ENST00000303115	NM_002185.3	357	aCt/aGt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876401	35876401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	34	230	0	ENST00000303115.3:c.1193C>A	p.Pro398His	p.P398H	ENST00000303115	NM_002185.3	398	cCt/cAt																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196966	138196966	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	35	168	0	ENST00000237289.4:c.628A>T	p.Ile210Phe	p.I210F	ENST00000237289	NM_001270507.1	210	Att/Ttt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729816	41729816	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1273	141	582	0	ENST00000242208.4:c.713T>A	p.Leu238Gln	p.L238Q	ENST00000242208	NM_002192.2	238	cTg/cAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521468	8521468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	52	257	0	ENST00000356435.5:c.770G>T	p.Cys257Phe	p.C257F	ENST00000356435		257	tGt/tTt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342871	87342871	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	16	135	0	ENST00000277120.3:c.1156G>C	p.Asp386His	p.D386H	ENST00000277120		386	Gat/Cat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534722	18534722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	78	378	0	ENST00000266497.5:c.1780C>A	p.Leu594Met	p.L594M	ENST00000266497		594	Ctg/Atg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245844	46245844	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	66	322	0	ENST00000334344.6:c.3938A>T	p.Gln1313Leu	p.Q1313L	ENST00000334344	NM_152641.2	1313	cAa/cTa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610078	81610078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	50	339	2	ENST00000298171.2:c.1676G>T	p.Gly559Val	p.G559V	ENST00000298171	NM_000369.2	559	gGa/gTa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7982728	7982728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	66	267	0	ENST00000319144.4:c.1057C>A	p.Pro353Thr	p.P353T	ENST00000319144	NM_001139.2	353	Ccc/Acc																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33433430	33433430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	47	206	0	ENST00000335858.7:c.215A>T	p.Glu72Val	p.E72V	ENST00000335858	NM_133629.2	72	gAg/gTg																																																																														
CD79B	974	MSKCC	GRCh37	17	62006684	62006684	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	75	341	0	ENST00000392795.3:c.595G>T	p.Gly199Cys	p.G199C	ENST00000392795	NM_001039933.1	199	Ggc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980783	40980783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	66	398	2	ENST00000373198.4:c.1703C>A	p.Ala568Asp	p.A568D	ENST00000373198	NM_133170.3	568	gCc/gAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933751	39933751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	94	460	0	ENST00000378444.4:c.848C>A	p.Ala283Glu	p.A283E	ENST00000378444	NM_001123385.1	283	gCa/gAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409937	63409937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	145	560	1	ENST00000330258.3:c.3230C>A	p.Pro1077His	p.P1077H	ENST00000330258	NM_152424.3	1077	cCt/cAt																																																																														
AR	367	MSKCC	GRCh37	X	66765480	66765480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	69	276	0	ENST00000374690.3:c.492G>T	p.Leu164Phe	p.L164F	ENST00000374690	NM_000044.3	164	ttG/ttT																																																																														
AR	367	MSKCC	GRCh37	X	66937395	66937395	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1176	122	626	0	ENST00000374690.3:c.2249T>A	p.Met750Lys	p.M750K	ENST00000374690	NM_000044.3	750	aTg/aAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76776957	76776957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	97	582	1	ENST00000373344.5:c.6995G>T	p.Arg2332Ile	p.R2332I	ENST00000373344	NM_000489.3	2332	aGa/aTa																																																																														
ATRX	546	MSKCC	GRCh37	X	77041467	77041467	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	128	469	0	ENST00000373344.5:c.20+1G>T		p.X7_splice	ENST00000373344	NM_000489.3	7																																																																															
STAG2	10735	MSKCC	GRCh37	X	123215294	123215294	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	107	598	0	ENST00000218089.9:c.2840G>C	p.Gly947Ala	p.G947A	ENST00000218089	NM_001042749.1	947	gGc/gCc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220201	1220383	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGGTGTGGCTCCCTGCTGGACCTAGCCTTTCCTCTGTCCTGTGTGCCTGGACTTCTGTGACTTCCCAGCTGGGCCTGTGGTGTTTGGGAGGCTCCCAGGCAGCTGCAAAGGGGACCCCTGTGAGGGGCAGGGAGGCCTCGGCCCCAGGACGGGTGTGTGCTGCCCGCAGGTACTTCTGTCA	GCAGGTGTGGCTCCCTGCTGGACCTAGCCTTTCCTCTGTCCTGTGTGCCTGGACTTCTGTGACTTCCCAGCTGGGCCTGTGGTGTTTGGGAGGCTCCCAGGCAGCTGCAAAGGGGACCCCTGTGAGGGGCAGGGAGGCCTCGGCCCCAGGACGGGTGTGTGCTGCCCGCAGGTACTTCTGTCA	-			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	52	23	0	ENST00000326873.7:c.465-169_478del		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212566781	212566782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	50	464	0	ENST00000342788.4:c.1399dup	p.Cys467LeufsTer7	p.C467Lfs*7	ENST00000342788	NM_005235.2	467	tgt/tTgt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610153	10610154	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	93	331	0	ENST00000171111.5:c.556_557delinsTT	p.Gly186Phe	p.G186F	ENST00000171111	NM_203500.1	186	GGc/TTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70343060	70343062	+	frameshift_variant	Frame_Shift_Del	DEL	CGG	CGG	A			P-0010332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	41	367	0	ENST00000374080.3:c.1601_1603delinsA	p.Ala534GlufsTer3	p.A534Efs*3	ENST00000374080		534	gCGGag/gAag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			597	42	563	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	50	684	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CBL	867	MSKCC	GRCh37	11	119148922	119148922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	29	441	0	ENST00000264033.4:c.1142G>A	p.Cys381Tyr	p.C381Y	ENST00000264033	NM_005188.3	381	tGt/tAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76855288	76855288	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	41	397	0	ENST00000373344.5:c.5699G>T	p.Gly1900Val	p.G1900V	ENST00000373344	NM_000489.3	1900	gGt/gTt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30194859	30194859	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	40	530	0	ENST00000331968.5:c.286G>T	p.Gly96Ter	p.G96*	ENST00000331968	NM_002742.2	96	Gga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584552	48584552	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	26	566	0	ENST00000342988.3:c.725C>G	p.Ser242Ter	p.S242*	ENST00000342988	NM_005359.5	242	tCa/tGa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78426146	78426162	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGGTACAGGTGGCCC	TGGGGTACAGGTGGCCC	-			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	23	356	0	ENST00000370768.2:c.1363_1379del	p.Gly455TrpfsTer30	p.G455Wfs*30	ENST00000370768	NM_003902.3	455	GGGCCACCTGTACCCCAt/t																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420124	49420124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	31	623	0	ENST00000301067.7:c.15625G>T	p.Gly5209Cys	p.G5209C	ENST00000301067	NM_003482.3	5209	Ggc/Tgc																																																																														
NF1	4763	MSKCC	GRCh37	17	29483037	29483037	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	40	486	1	ENST00000358273.4:c.97A>T	p.Lys33Ter	p.K33*	ENST00000358273	NM_001042492.2	33	Aaa/Taa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249994	39249994	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	66	686	0	ENST00000402219.2:c.1575A>G	p.Ile525Met	p.I525M	ENST00000402219	NM_005633.3	525	atA/atG																																																																														
SRC	6714	MSKCC	GRCh37	20	36026100	36026100	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	46	664	1	ENST00000358208.4:c.704-2A>T		p.X235_splice	ENST00000358208		235																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134898776	134898776	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	39	534	0	ENST00000398015.3:c.1834A>T	p.Lys612Ter	p.K612*	ENST00000398015	NM_004441.4	612	Aag/Tag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920439	134920439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			657	40	772	0	ENST00000398015.3:c.2254G>T	p.Val752Phe	p.V752F	ENST00000398015	NM_004441.4	752	Gtc/Ttc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871220	35871220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	91	390	1	ENST00000303115.3:c.442G>T	p.Val148Leu	p.V148L	ENST00000303115	NM_002185.3	148	Gtg/Ttg																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			524	37	443	0	ENST00000257430.4:c.4189G>A	p.Glu1397Lys	p.E1397K	ENST00000257430	NM_000038.5	1397	Gag/Aag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342665	87342665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	48	622	0	ENST00000277120.3:c.950G>T	p.Trp317Leu	p.W317L	ENST00000277120		317	tGg/tTg																																																																														
AR	367	MSKCC	GRCh37	X	66765112	66765112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	32	579	0	ENST00000374690.3:c.124C>A	p.Pro42Thr	p.P42T	ENST00000374690	NM_000044.3	42	Cca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	350	825	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0012426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	77	441	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55948198	55948198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147627339		P-0012426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	153	558	2	ENST00000263923.4:c.3773C>T	p.Thr1258Met	p.T1258M	ENST00000263923	NM_002253.2	1258	aCg/aTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508932	106508932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	25	245	0	ENST00000359195.3:c.926C>T	p.Thr309Met	p.T309M	ENST00000359195	NM_002649.2	309	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112175399	112175400	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0012426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	100	380	0	ENST00000257430.4:c.4110_4111del	p.Pro1372ThrfsTer2	p.P1372Tfs*2	ENST00000257430	NM_000038.5	1370	AAa/a																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317042	11317042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	75	548	0	ENST00000361445.4:c.452G>A	p.Arg151Gln	p.R151Q	ENST00000361445	NM_004958.3	151	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836816	151836816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019664-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			683	234	568	2	ENST00000262189.6:c.14404G>A	p.Gly4802Arg	p.G4802R	ENST00000262189	NM_170606.2	4802	Ggg/Agg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28624235	28624235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019664-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	436	565	0	ENST00000241453.7:c.739A>G	p.Ile247Val	p.I247V	ENST00000241453	NM_004119.2	247	Ata/Gta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	298	797	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MGA	23269	MSKCC	GRCh37	15	41988310	41988310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	349	807	2	ENST00000219905.7:c.1102G>T	p.Ala368Ser	p.A368S	ENST00000219905	NM_001164273.1	368	Gcc/Tcc																																																																														
CBFB	865	MSKCC	GRCh37	16	67063316	67063319	+	missense_variant	Missense_Mutation	ONP	GCGC	GCGC	TCTG			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	158	492	1	ENST00000412916.2:c.6_9delinsTCTG	p.Arg3Leu	p.R3L	ENST00000412916		2	ccGCGC/ccTCTG																																																																														
STK11	6794	MSKCC	GRCh37	19	1220579	1220579	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	362	908	0	ENST00000326873.7:c.598-1G>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																															
RUNX1	861	MSKCC	GRCh37	21	36259209	36259210	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	329	1048	3	ENST00000300305.3:c.281_282delinsAA	p.Ser94Lys	p.S94K	ENST00000300305		94	aGC/aAA																																																																														
NF2	4771	MSKCC	GRCh37	22	30054229	30054229	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	228	704	0	ENST00000338641.4:c.651C>A	p.Tyr217Ter	p.Y217*	ENST00000338641	NM_000268.3	217	taC/taA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508950	106508950	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	210	523	1	ENST00000359195.3:c.944T>C	p.Leu315Pro	p.L315P	ENST00000359195	NM_002649.2	315	cTa/cCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485897	8485897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	186	501	0	ENST00000356435.5:c.2920C>A	p.Pro974Thr	p.P974T	ENST00000356435		974	Cca/Aca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	282	760	1	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	282	760	1	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	282	760	1	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411315	63411315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	342	1089	0	ENST00000330258.3:c.1852G>C	p.Ala618Pro	p.A618P	ENST00000330258	NM_152424.3	618	Gct/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0023941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	87	661	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2265	176	664	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936393		P-0023941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	69	463	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	160	485	0	ENST00000304494.5:c.188T>C	p.Leu63Pro	p.L63P	ENST00000304494	NM_000077.4	63	cTg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	160	485	0	ENST00000304494.5:c.188T>C	p.Leu63Pro	p.L63P	ENST00000304494	NM_000077.4	63	cTg/cCg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777898	3777898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	81	866	0	ENST00000262367.5:c.7150C>T	p.His2384Tyr	p.H2384Y	ENST00000262367	NM_004380.2	2384	Cac/Tac																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713640	30713640	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	80	528	0	ENST00000359013.4:c.1040G>A	p.Trp347Ter	p.W347*	ENST00000359013	NM_001024847.2	347	tGg/tAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024657-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	154	302	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024657-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	140	504	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319836	8319836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024657-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	215	403	0	ENST00000356435.5:c.5665A>G	p.Thr1889Ala	p.T1889A	ENST00000356435		1889	Aca/Gca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944587	40944587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			400	54	432	0	ENST00000373198.4:c.1915G>T	p.Ala639Ser	p.A639S	ENST00000373198	NM_133170.3	639	Gca/Tca																																																																														
RHOA	387	MSKCC	GRCh37	3	49405950	49405950	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			718	50	650	1	ENST00000418115.1:c.188A>T	p.Gln63Leu	p.Q63L	ENST00000418115	NM_001664.2	63	cAg/cTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			242	101	288	0				ENST00000310581	NM_198253.2																																																																																
PARK2	5071	MSKCC	GRCh37	6	162683652	162683652	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025261-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			672	54	665	0	ENST00000366898.1:c.317A>T	p.Asp106Val	p.D106V	ENST00000366898	NM_004562.2	106	gAc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	296	537	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0028935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			51	507	631	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
MPL	4352	MSKCC	GRCh37	1	43804988	43804988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	210	422	0	ENST00000372470.3:c.438G>T	p.Gln146His	p.Q146H	ENST00000372470	NM_005373.2	146	caG/caT																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046637	30046637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	260	574	1	ENST00000331968.5:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000331968	NM_002742.2	849	cGa/cAa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660837	227660837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200073898		P-0028935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	271	525	2	ENST00000305123.5:c.2618G>A	p.Arg873Gln	p.R873Q	ENST00000305123	NM_005544.2	873	cGg/cAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41265789	41266324	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTA	CAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTA	-			P-0028935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			5	85	74	0	ENST00000349496.5:c.13+217_241+80del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030460-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	129	314	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0030460-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	251	618	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753158	42753158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030460-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	262	837	0	ENST00000222329.4:c.1106C>G	p.Ser369Cys	p.S369C	ENST00000222329	NM_006494.2	369	tCt/tGt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26022373	26022373	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0030460-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	653	709	0	ENST00000435504.4:c.284C>G	p.Ser95Ter	p.S95*	ENST00000435504		95	tCa/tGa																																																																														
EP300	2033	MSKCC	GRCh37	22	41569772	41569772	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030460-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			74	234	245	1	ENST00000263253.7:c.4763T>C	p.Met1588Thr	p.M1588T	ENST00000263253	NM_001429.3	1588	aTg/aCg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942820	44942821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030460-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			573	317	829	0	ENST00000377967.4:c.3401dup	p.Tyr1135IlefsTer16	p.Y1135Ifs*16	ENST00000377967	NM_021140.2	1134	cta/cTta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	389	352	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484858	57485003	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTTTGTGGAGTGACCGCCCACCCCCTGCGCTTGCCCAGGAGGCCCTGGTCTGCACTGTTTATAGAGAAGAACCCCGTGCAAGCATTCCAGACCCCTGGCCGAAAGCGCGCTTCTCCCAAGCATTCACACGGCCTCCCTTCTTGT	AGGTTTGTGGAGTGACCGCCCACCCCCTGCGCTTGCCCAGGAGGCCCTGGTCTGCACTGTTTATAGAGAAGAACCCCGTGCAAGCATTCCAGACCCCTGGCCGAAAGCGCGCTTCTCCCAAGCATTCACACGGCCTCCCTTCTTGT	-			P-0030874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1442	169	395	0	ENST00000371085.3:c.839+1_840-1del		p.X280_splice	ENST00000371085	NM_000516.4	280																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485136	57485387	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	-			P-0030874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	153	281	0	ENST00000371085.3:c.970+1_971-1del		p.X324_splice	ENST00000371085	NM_000516.4	324																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	119	174	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485456	57485736	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	-			P-0030874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1252	146	273	1	ENST00000371085.3:c.1038+1_1039-1del		p.X346_splice	ENST00000371085	NM_000516.4	346																																																																															
TP53	7157	MSKCC	GRCh37	17	7578202	7578204	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0030874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	432	522	0	ENST00000269305.4:c.645_647del	p.Ser215_Val216delinsArg	p.S215_V216delinsR	ENST00000269305	NM_001126112.2	215	agTGTg/agg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281963	39281963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0030874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	147	220	0	ENST00000402219.2:c.512T>C	p.Val171Ala	p.V171A	ENST00000402219	NM_005633.3	171	gTa/gCa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023004	150023004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	313	487	0	ENST00000253339.5:c.259C>T	p.Pro87Ser	p.P87S	ENST00000253339		87	Cca/Tca																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80343484	80343484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	199	355	0	ENST00000286548.4:c.835C>G	p.Leu279Val	p.L279V	ENST00000286548	NM_002072.3	279	Cta/Gta																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0031225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	349	1046	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026959	6026959	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	12	357	0	ENST00000265849.7:c.1437C>G	p.His479Gln	p.H479Q	ENST00000265849	NM_000535.5	479	caC/caG																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52719836	52719836	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	426	1504	0	ENST00000322088.6:c.1048A>G	p.Met350Val	p.M350V	ENST00000322088	NM_014225.5	350	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	444	633	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0032123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	358	745	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0032123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	134	446	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592108	67592108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	38	362	0	ENST00000274335.5:c.1924C>T	p.Arg642Ter	p.R642*	ENST00000274335		642	Cga/Tga																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	249	680	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184592	11184592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	325	815	0	ENST00000361445.4:c.6625C>G	p.Leu2209Val	p.L2209V	ENST00000361445	NM_004958.3	2209	Ctg/Gtg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	204	538	0	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211091	36211091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	363	1000	1	ENST00000222270.7:c.842G>A	p.Arg281His	p.R281H	ENST00000222270	NM_014727.1	281	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112173655	112173656	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0032123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	153	484	0	ENST00000257430.4:c.2364_2365del	p.Gln789GlufsTer9	p.Q789Efs*9	ENST00000257430	NM_000038.5	788	aaGCag/aaag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	335	464	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	153	426	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
ATRX	546	MSKCC	GRCh37	X	76939999	76939999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	196	298	1	ENST00000373344.5:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000373344	NM_000489.3	250	cGa/cAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120707	115120707	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	126	679	0	ENST00000257566.3:c.299A>C	p.Glu100Ala	p.E100A	ENST00000257566	NM_016569.3	100	gAg/gCg																																																																														
APC	324	MSKCC	GRCh37	5	112175222	112175223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	46	222	0	ENST00000257430.4:c.3932_3933dup	p.Gly1312LeufsTer10	p.G1312Lfs*10	ENST00000257430	NM_000038.5	1311	att/aTTtt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945052	151945052	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	49	596	0	ENST00000262189.6:c.2467A>T	p.Ile823Phe	p.I823F	ENST00000262189	NM_170606.2	823	Att/Ttt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5066746	5066746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	63	347	0	ENST00000381652.3:c.1283G>A	p.Ser428Asn	p.S428N	ENST00000381652	NM_004972.3	428	aGt/aAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911614	114911614	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	CCGGC			P-0032363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	97	503	0	ENST00000543371.1:c.1132delinsCCGGC	p.Ala378ProfsTer46	p.A378Pfs*46	ENST00000543371	NM_001198531.1	378	Gcg/CCGGCcg																																																																														
PGR	5241	MSKCC	GRCh37	11	100922258	100922258	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032594-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	221	356	0	ENST00000325455.5:c.2254C>T	p.Gln752Ter	p.Q752*	ENST00000325455	NM_001202474.3	752	Cag/Tag																																																																														
KIT	3815	MSKCC	GRCh37	4	55593637	55593660	+	protein_altering_variant	In_Frame_Del	DEL	ATGTTTACATAGACCCAACACAAC	ATGTTTACATAGACCCAACACAAC	GTG			P-0032594-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	306	527	1	ENST00000288135.5:c.1703_1726delinsGTG	p.Tyr568_Leu576delinsCysVal	p.Y568_L576delinsCV	ENST00000288135	NM_000222.2	568	tATGTTTACATAGACCCAACACAACtt/tGTGtt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	182	264	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	659	665	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057874	27057874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1503	500	593	1	ENST00000324856.7:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000324856	NM_006015.4	528	Cag/Tag																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56787259	56787259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28363311		P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			115	309	519	0	ENST00000337432.4:c.745C>T	p.Arg249Cys	p.R249C	ENST00000337432	NM_058216.2	249	Cgt/Tgt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867256	45867256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	424	608	0	ENST00000391945.4:c.937G>A	p.Glu313Lys	p.E313K	ENST00000391945	NM_000400.3	313	Gaa/Aaa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612176	189612176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			86	417	466	0	ENST00000264731.3:c.1928G>A	p.Arg643Gln	p.R643Q	ENST00000264731	NM_003722.4	643	cGa/cAa																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588877	69588877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			657	363	442	0	ENST00000168712.1:c.359C>T	p.Pro120Leu	p.P120L	ENST00000168712	NM_002007.2	120	cCc/cTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341785	8341785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	422	617	0	ENST00000356435.5:c.4855G>A	p.Glu1619Lys	p.E1619K	ENST00000356435		1619	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245057	46245057	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			106	340	429	0	ENST00000334344.6:c.3151C>T	p.Gln1051Ter	p.Q1051*	ENST00000334344	NM_152641.2	1051	Cag/Tag																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008329	29008329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	204	260	0	ENST00000282397.4:c.542G>A	p.Gly181Glu	p.G181E	ENST00000282397	NM_002019.4	181	gGa/gAa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123263314	123263314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	141	329	0	ENST00000358487.5:c.1429C>T	p.Pro477Ser	p.P477S	ENST00000358487	NM_000141.4	477	Cca/Tca																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085798	16085798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	312	338	0	ENST00000281043.3:c.974C>T	p.Pro325Leu	p.P325L	ENST00000281043	NM_005378.4	325	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	164	289	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023917	27023918	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	56	32	0	ENST00000324856.7:c.1023_1024delinsTA	p.Ala342Thr	p.A342T	ENST00000324856	NM_006015.4	341	gcGGcg/gcTAcg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332949	70332949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	162	553	0	ENST00000373644.4:c.854C>T	p.Ser285Phe	p.S285F	ENST00000373644	NM_030625.2	285	tCt/tTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373196	118373196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			75	246	328	1	ENST00000534358.1:c.6589C>T	p.Arg2197Cys	p.R2197C	ENST00000534358	NM_005933.3	2197	Cgt/Tgt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975715	26975715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	170	316	0	ENST00000381527.3:c.1223C>T	p.Pro408Leu	p.P408L	ENST00000381527	NM_001260.1	408	cCt/cTt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73343010	73343010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	166	304	0	ENST00000377767.4:c.1796C>T	p.Ser599Leu	p.S599L	ENST00000377767	NM_014953.3	599	tCa/tTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42058300	42058300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	194	272	0	ENST00000219905.7:c.8020G>A	p.Glu2674Lys	p.E2674K	ENST00000219905	NM_001164273.1	2674	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992613	72992613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			88	354	465	0	ENST00000268489.5:c.1432G>A	p.Glu478Lys	p.E478K	ENST00000268489	NM_006885.3	478	Gaa/Aaa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979566	7979566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			94	428	475	0	ENST00000319144.4:c.1459G>A	p.Glu487Lys	p.E487K	ENST00000319144	NM_001139.2	487	Gag/Aag																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979995	7979995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			126	424	576	1	ENST00000319144.4:c.1342G>A	p.Glu448Lys	p.E448K	ENST00000319144	NM_001139.2	448	Gag/Aag																																																																														
CD79A	973	MSKCC	GRCh37	19	42384964	42384964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	171	475	0	ENST00000221972.3:c.598G>A	p.Glu200Lys	p.E200K	ENST00000221972	NM_021601.3	200	Gag/Aag																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321174	62321175	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	416	654	2	ENST00000508582.2:c.2169_2170delinsTT	p.Arg724Trp	p.R724W	ENST00000508582		723	atCCgg/atTTgg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42861441	42861441	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	262	329	1	ENST00000398585.3:c.429G>A	p.Trp143Ter	p.W143*	ENST00000398585	NM_001135099.1	143	tgG/tgA																																																																														
MSH3	4437	MSKCC	GRCh37	5	79961160	79961160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	117	426	0	ENST00000265081.6:c.557C>T	p.Ser186Leu	p.S186L	ENST00000265081	NM_002439.4	186	tCg/tTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515406	149515406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			88	188	430	1	ENST00000261799.4:c.76G>A	p.Glu26Lys	p.E26K	ENST00000261799	NM_002609.3	26	Gaa/Aaa																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43739003	43739004	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	175	388	1	ENST00000523873.1:c.20_21delinsAA	p.Trp7Ter	p.W7*	ENST00000523873		7	tGG/tAA																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64288881	64288881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	406	551	0	ENST00000370651.3:c.277C>T	p.Arg93Cys	p.R93C	ENST00000370651	NM_003463.4	93	Cgt/Tgt																																																																														
LYN	4067	MSKCC	GRCh37	8	56922637	56922637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	163	432	0	ENST00000519728.1:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000519728	NM_002350.3	503	Gcc/Acc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058544	69058544	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	137	569	0	ENST00000288368.4:c.4188A>C	p.Lys1396Asn	p.K1396N	ENST00000288368	NM_024870.2	1396	aaA/aaC																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966647	36966647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	406	509	0	ENST00000358127.4:c.679G>T	p.Asp227Tyr	p.D227Y	ENST00000358127	NM_001280556.1	227	Gac/Tac																																																																														
SYK	6850	MSKCC	GRCh37	9	93606247	93606247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032774-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	393	517	0	ENST00000375746.1:c.67G>A	p.Glu23Lys	p.E23K	ENST00000375746	NM_001174167.1	23	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	222	413	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	56	547	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																														
RARA	5914	MSKCC	GRCh37	17	38512393	38512393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	49	562	0	ENST00000254066.5:c.1304G>A	p.Gly435Asp	p.G435D	ENST00000254066	NM_000964.3	435	gGt/gAt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553497	106553497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	21	275	0	ENST00000369096.4:c.1462C>A	p.Leu488Ile	p.L488I	ENST00000369096	NM_001198.3	488	Ctt/Att																																																																														
TET1	80312	MSKCC	GRCh37	10	70446212	70446212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	83	608	0	ENST00000373644.4:c.5152G>A	p.Glu1718Lys	p.E1718K	ENST00000373644	NM_030625.2	1718	Gag/Aag																																																																														
NF2	4771	MSKCC	GRCh37	22	30035154	30035154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	206	606	0	ENST00000338641.4:c.316G>A	p.Glu106Lys	p.E106K	ENST00000338641	NM_000268.3	106	Gaa/Aaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47058705	47058706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	237	540	0	ENST00000409792.3:c.7572dup	p.Lys2525Ter	p.K2525*	ENST00000409792	NM_014159.6	2524	-/T																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838389	156838389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	85	755	0	ENST00000524377.1:c.667G>C	p.Glu223Gln	p.E223Q	ENST00000524377	NM_002529.3	223	Gag/Cag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953288	17953288	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	153	704	1	ENST00000458235.1:c.698C>G	p.Ser233Trp	p.S233W	ENST00000458235	NM_000215.3	233	tCg/tGg																																																																														
PARP1	142	MSKCC	GRCh37	1	226568830	226568830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	82	742	0	ENST00000366794.5:c.1239G>C	p.Glu413Asp	p.E413D	ENST00000366794	NM_001618.3	413	gaG/gaC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434211	49434211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			799	291	968	0	ENST00000301067.7:c.7342G>C	p.Asp2448His	p.D2448H	ENST00000301067	NM_003482.3	2448	Gac/Cac																																																																														
MDM2	4193	MSKCC	GRCh37	12	69229748	69229748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	38	376	0	ENST00000462284.1:c.824C>T	p.Ser275Leu	p.S275L	ENST00000462284	NM_002392.5	275	tCa/tTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346334	89346334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	133	462	0	ENST00000301030.4:c.6616G>C	p.Glu2206Gln	p.E2206Q	ENST00000301030	NM_001256183.1	2206	Gag/Cag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757422	40757422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			694	98	672	0	ENST00000373198.4:c.2876C>T	p.Ser959Phe	p.S959F	ENST00000373198	NM_133170.3	959	tCt/tTt																																																																														
EP300	2033	MSKCC	GRCh37	22	41525947	41525947	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	211	602	0	ENST00000263253.7:c.1222A>T	p.Arg408Ter	p.R408*	ENST00000263253	NM_001429.3	408	Aga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480346	89480346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	32	361	0	ENST00000336596.2:c.2183G>A	p.Arg728Gln	p.R728Q	ENST00000336596	NM_005233.5	728	cGa/cAa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149375021	149375021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1294	130	816	0	ENST00000360632.3:c.73G>C	p.Asp25His	p.D25H	ENST00000360632	NM_015472.4	25	Gac/Cac																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167750	185167750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			801	187	594	0	ENST00000265026.3:c.1073C>T	p.Ser358Phe	p.S358F	ENST00000265026	NM_004721.4	358	tCt/tTt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191235	185191235	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	149	518	0	ENST00000265026.3:c.2116G>C	p.Asp706His	p.D706H	ENST00000265026	NM_004721.4	706	Gac/Cac																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191361	185191361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033700-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			874	242	679	0	ENST00000265026.3:c.2242G>A	p.Ala748Thr	p.A748T	ENST00000265026	NM_004721.4	748	Gct/Act																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100677	8100677	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			986	115	839	0	ENST00000346208.3:c.651C>A	p.His217Gln	p.H217Q	ENST00000346208		217	caC/caA																																																																														
STK11	6794	MSKCC	GRCh37	19	1221211	1221211	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0033998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	168	615	0	ENST00000326873.7:c.735-1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600380	10600380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			767	206	879	1	ENST00000171111.5:c.1475del	p.Pro492GlnfsTer8	p.P492Qfs*8	ENST00000171111	NM_203500.1	492	cCa/ca																																																																														
UPF1	5976	MSKCC	GRCh37	19	18966754	18966754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			931	92	752	2	ENST00000262803.5:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000262803	NM_002911.3	522	cCg/cTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42798206	42798253	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGGCTCTTACCGCAAGAAGAGGAAGAACTCCACGGGTAGGCGAGCAT	TGGGCTCTTACCGCAAGAAGAGGAAGAACTCCACGGGTAGGCGAGCAT	-			P-0033998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			708	91	760	1	ENST00000575354.2:c.4165_4195+17del		p.X1389_splice	ENST00000575354	NM_015125.3	1389																																																																															
APC	324	MSKCC	GRCh37	5	112136975	112136975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0033998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	89	358	0	ENST00000257430.4:c.730-1G>A		p.X244_splice	ENST00000257430	NM_000038.5	244																																																																															
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0033998-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	143	361	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922943	44922943	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	11	327	0	ENST00000377967.4:c.1805del	p.Gly602GlufsTer23	p.G602Efs*23	ENST00000377967	NM_021140.2	602	Gga/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0034088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	401	740	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0034088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	67	210	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372184	55372184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	137	184	0	ENST00000297316.4:c.874G>A	p.Ala292Thr	p.A292T	ENST00000297316	NM_022454.3	292	Gcc/Acc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	266	502	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46587863	46587863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	97	451	1	ENST00000263734.3:c.541C>T	p.Arg181Cys	p.R181C	ENST00000263734	NM_001430.4	181	Cgt/Tgt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15942874	15942875	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0034088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	212	456	1	ENST00000268712.3:c.6827_6828del	p.Asp2276GlyfsTer4	p.D2276Gfs*4	ENST00000268712	NM_006311.3	2276	gAT/g																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212587142	212587142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	63	442	0	ENST00000342788.4:c.859G>A	p.Ala287Thr	p.A287T	ENST00000342788	NM_005235.2	287	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAT			P-0034088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	78	217	0	ENST00000257430.4:c.3920_3923dup	p.Lys1308AsnfsTer8	p.K1308Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAAATaa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70982010	70982011	+	missense_variant	Missense_Mutation	DNP	TA	TA	GT			P-0034088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1825	216	1022	1	ENST00000276594.2:c.85_86delinsAC	p.Tyr29Thr	p.Y29T	ENST00000276594	NM_024504.3	29	TAc/ACc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0034112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	147	481	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	92	546	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242478	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAG	AATTAAGAGAAG	CAC			P-0034144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	78	343	0	ENST00000275493.2:c.2237_2248delinsCAC	p.Glu746_Ala750delinsAlaPro	p.E746_A750delinsAP	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGca/gCACca																																																																														
RET	5979	MSKCC	GRCh37	10	43610038	43610038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	27	683	0	ENST00000355710.3:c.1990G>T	p.Ala664Ser	p.A664S	ENST00000355710	NM_020975.4	664	Gcc/Tcc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31372646	31372646	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	23	430	0	ENST00000328111.2:c.287C>G	p.Thr96Ser	p.T96S	ENST00000328111	NM_006892.3	96	aCt/aGt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	164	749	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245927408	245927408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	412	695	0	ENST00000388985.4:c.1120A>G	p.Met374Val	p.M374V	ENST00000388985		374	Atg/Gtg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911964	32911964	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	205	749	0	ENST00000380152.3:c.3472G>T	p.Glu1158Ter	p.E1158*	ENST00000380152		1158	Gaa/Taa																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430853	181430853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	312	1128	3	ENST00000325404.1:c.705G>A	p.Met235Ile	p.M235I	ENST00000325404	NM_003106.3	235	atG/atA																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289512	33289512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	343	1153	0	ENST00000374542.5:c.191A>G	p.Glu64Gly	p.E64G	ENST00000374542	NM_001141970.1	64	gAg/gGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268987	55268987	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	291	887	0	ENST00000275493.2:c.3053T>A	p.Ile1018Asn	p.I1018N	ENST00000275493	NM_005228.3	1018	aTc/aAc																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923358	36923358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	189	751	0	ENST00000358127.4:c.904G>T	p.Val302Leu	p.V302L	ENST00000358127	NM_001280556.1	302	Gtg/Ttg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760448	133760448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	158	823	0	ENST00000318560.5:c.2771G>C	p.Gly924Ala	p.G924A	ENST00000318560	NM_005157.4	924	gGg/gCg																																																																														
NF1	4763	MSKCC	GRCh37	17	29528489	29528489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	173	628	0	ENST00000358273.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000358273	NM_001042492.2	416	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	367	766	4	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781440	135781440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	47	575	1	ENST00000298552.3:c.1525C>T	p.Arg509Ter	p.R509*	ENST00000298552	NM_001162426.1	509	Cga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974312	93974312	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	119	462	0	ENST00000369303.4:c.1742G>A	p.Arg581Lys	p.R581K	ENST00000369303	NM_004440.3	581	aGg/aAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18699356	18699356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	108	410	0	ENST00000266497.5:c.3457C>T	p.His1153Tyr	p.H1153Y	ENST00000266497		1153	Cat/Tat																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874562	35874562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	184	622	0	ENST00000303115.3:c.718C>T	p.Pro240Ser	p.P240S	ENST00000303115	NM_002185.3	240	Cct/Tct																																																																														
CBL	867	MSKCC	GRCh37	11	119155731	119155731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	447	747	2	ENST00000264033.4:c.1484C>T	p.Pro495Leu	p.P495L	ENST00000264033	NM_005188.3	495	cCg/cTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798734	135798734	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	19	312	0	ENST00000298552.3:c.508+1G>A		p.X170_splice	ENST00000298552	NM_001162426.1	170																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46264143	46264143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	94	277	0	ENST00000371998.3:c.1190C>T	p.Ser397Leu	p.S397L	ENST00000371998		397	tCg/tTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	245	383	0				ENST00000310581	NM_198253.2																																																																																
IGF1	3479	MSKCC	GRCh37	12	102813380	102813381	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	316	622	0	ENST00000307046.8:c.308_309delinsAA	p.Arg103Lys	p.R103K	ENST00000307046	NM_001111285.1	103	aGG/aAA																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926257	112926258	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	286	728	2	ENST00000351677.2:c.1390_1391delinsAA	p.Gly464Asn	p.G464N	ENST00000351677	NM_002834.3	464	GGc/AAc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066916	30066916	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	252	525	0	ENST00000331968.5:c.2215T>G	p.Phe739Val	p.F739V	ENST00000331968	NM_002742.2	739	Ttc/Gtc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3645679	3645679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	425	835	0	ENST00000294008.3:c.1940C>T	p.Pro647Leu	p.P647L	ENST00000294008	NM_032444.2	647	cCc/cTc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39644758	39644759	+	missense_variant	Missense_Mutation	DNP	AG	AG	CT			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	147	453	1	ENST00000262039.4:c.2487_2488inv	p.Asp830Tyr	p.D830Y	ENST00000262039	NM_002647.2	829	ccAGat/ccCTat																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523702	176523702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	406	873	0	ENST00000292408.4:c.2113G>A	p.Gly705Arg	p.G705R	ENST00000292408	NM_213647.1	705	Gga/Aga																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995542	68995542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	244	925	0	ENST00000288368.4:c.1946T>C	p.Phe649Ser	p.F649S	ENST00000288368	NM_024870.2	649	tTc/tCc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781241	135781242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	264	734	0	ENST00000298552.3:c.1723dup	p.Ser575PhefsTer13	p.S575Ffs*13	ENST00000298552	NM_001162426.1	575	tct/tTct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	137	382	6	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	262	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	330	606	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67358683	67358683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	104	223	0	ENST00000327367.4:c.191G>T	p.Cys64Phe	p.C64F	ENST00000327367	NM_005902.3	64	tGc/tTc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457640	67457640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	173	434	3	ENST00000327367.4:c.455del	p.Pro152HisfsTer34	p.P152Hfs*34	ENST00000327367	NM_005902.3	150	ttC/tt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821601	72821618	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCCGCCGCCA	CCGCCGCCGCCGCCGCCA	-			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	28	46	0	ENST00000268489.5:c.10557_10574delTGGCGGCGGCGGCGGCGG	p.Gly3522_Gly3527del	p.G3522_G3527del	ENST00000268489	NM_006885.3	3519	ggTGGCGGCGGCGGCGGCGGc/ggc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554542	63554542	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	173	288	0	ENST00000307078.5:c.197A>T	p.Glu66Val	p.E66V	ENST00000307078	NM_004655.3	66	gAg/gTg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368202	45368202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	208	271	0	ENST00000262160.6:c.1400C>T	p.Ser467Leu	p.S467L	ENST00000262160	NM_005901.5	467	tCa/tTa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229207	36229207	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	210	405	0	ENST00000222270.7:c.7897A>G	p.Met2633Val	p.M2633V	ENST00000222270	NM_014727.1	2633	Atg/Gtg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277254	41277254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	63	282	0	ENST00000349496.5:c.1723G>A	p.Gly575Arg	p.G575R	ENST00000349496	NM_001904.3	575	Gga/Aga																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127447	55127447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	160	375	0	ENST00000257290.5:c.235G>A	p.Gly79Ser	p.G79S	ENST00000257290	NM_006206.4	79	Ggc/Agc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	73	207	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112173368	112173368	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	94	226	1	ENST00000257430.4:c.2077A>T	p.Lys693Ter	p.K693*	ENST00000257430	NM_000038.5	693	Aaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175753	112175754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	103	220	0	ENST00000257430.4:c.4464_4465dupAT	p.Leu1489TyrfsTer19	p.L1489Yfs*19	ENST00000257430	NM_000038.5	1488	tta/tTAta																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839802	27839802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	171	366	0	ENST00000328488.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000328488	NM_003533.2	98	Gag/Aag																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020754	37020754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	44	302	2	ENST00000358127.4:c.91C>T	p.Arg31Trp	p.R31W	ENST00000358127	NM_001280556.1	31	Cgg/Tgg																																																																														
MED12	9968	MSKCC	GRCh37	X	70356727	70356727	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0034305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	135	183	0	ENST00000374080.3:c.5401-2A>G		p.X1801_splice	ENST00000374080		1801																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	305	672	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201843	66201843	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0034307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	103	471	0	ENST00000273854.3:c.2659G>T	p.Val887Leu	p.V887L	ENST00000273854	NM_004439.5	887	Gtg/Ttg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526658	106526658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	135	635	0	ENST00000359195.3:c.2951C>T	p.Pro984Leu	p.P984L	ENST00000359195	NM_002649.2	984	cCa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858304	9858304	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	275	638	0	ENST00000330684.3:c.3097del	p.Gln1033ArgfsTer14	p.Q1033Rfs*14	ENST00000330684	NM_001134407.1	1033	Cag/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578460	7579045	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTTGTATTTTTTTGTAGAGACGAGGTTTCATCATGTTACCCAGGCTGGTCTTGAACTCCTGGGCTCAGGTGATCTGCCTGCCTTGGCCTCTTTGAGAGTGCTGGGATTGCAGGTGTGAGCCACCAAGCCTGGTCAGGAGCTTATTTTCAAAAGCCAAGGAATAC	ACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTTGTATTTTTTTGTAGAGACGAGGTTTCATCATGTTACCCAGGCTGGTCTTGAACTCCTGGGCTCAGGTGATCTGCCTGCCTTGGCCTCTTTGAGAGTGCTGGGATTGCAGGTGTGAGCCACCAAGCCTGGTCAGGAGCTTATTTTCAAAAGCCAAGGAATAC	-			P-0034307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	291	1024	0	ENST00000269305.4:c.375+267_470del		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
MSI2	124540	MSKCC	GRCh37	17	55478801	55478801	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	518	628	0	ENST00000284073.2:c.374A>G	p.Asp125Gly	p.D125G	ENST00000284073	NM_138962.2	125	gAt/gGt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602878	10602878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	284	1143	0	ENST00000171111.5:c.700C>G	p.Arg234Gly	p.R234G	ENST00000171111	NM_203500.1	234	Cgg/Ggg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155197	55155197	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	314	706	0	ENST00000257290.5:c.2796C>A	p.Cys932Ter	p.C932*	ENST00000257290	NM_006206.4	932	tgC/tgA																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652306	36652307	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0034307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	193	625	0	ENST00000244741.5:c.428_429delinsTT	p.Arg143Leu	p.R143L	ENST00000244741	NM_000389.4	143	cGG/cTT																																																																														
AGO2	27161	MSKCC	GRCh37	8	141567295	141567295	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1876	175	715	1	ENST00000220592.5:c.919A>C	p.Thr307Pro	p.T307P	ENST00000220592	NM_012154.3	307	Acg/Ccg																																																																														
KIT	3815	MSKCC	GRCh37	4	55599338	55599338	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	258	573	0	ENST00000288135.5:c.2464A>T	p.Asn822Tyr	p.N822Y	ENST00000288135	NM_000222.2	822	Aat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	104	304	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	104	304	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843595	156843595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139875058		P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	95	826	1	ENST00000524377.1:c.1021G>A	p.Val341Met	p.V341M	ENST00000524377	NM_002529.3	341	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	104	304	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29422337	29422337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	64	392	0	ENST00000358273.4:c.10C>T	p.His4Tyr	p.H4Y	ENST00000358273	NM_001042492.2	4	Cac/Tac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602679	10602679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	124	805	0	ENST00000171111.5:c.899A>G	p.Tyr300Cys	p.Y300C	ENST00000171111	NM_203500.1	300	tAc/tGc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11101834	11101841	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGGTGG	GGAGGTGG	-			P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	80	666	0	ENST00000344626.4:c.1254_1261del	p.Gln418HisfsTer17	p.Q418Hfs*17	ENST00000344626	NM_003072.3	418	caGGAGGTGGtg/catg																																																																														
TEK	7010	MSKCC	GRCh37	9	27206678	27206678	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	82	479	0	ENST00000380036.4:c.2463G>C	p.Trp821Cys	p.W821C	ENST00000380036	NM_000459.3	821	tgG/tgC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	235	395	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	326	515	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045016	47045016	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	135	279	0	ENST00000329236.7:c.2108C>G	p.Ser703Ter	p.S703*	ENST00000329236	NM_001204466.1	703	tCa/tGa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18576885	18576885	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	53	429	2	ENST00000266497.5:c.2293A>C	p.Lys765Gln	p.K765Q	ENST00000266497		765	Aag/Cag																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473618	67473618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	503	485	0	ENST00000327367.4:c.698G>T	p.Cys233Phe	p.C233F	ENST00000327367	NM_005902.3	233	tGc/tTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794449	42794449	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	377	683	0	ENST00000575354.2:c.1529T>A	p.Leu510Gln	p.L510Q	ENST00000575354	NM_015125.3	510	cTg/cAg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670774	134670774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	226	396	1	ENST00000398015.3:c.685G>T	p.Ala229Ser	p.A229S	ENST00000398015	NM_004441.4	229	Gca/Tca																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880959	134880959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	121	459	0	ENST00000398015.3:c.1522G>T	p.Ala508Ser	p.A508S	ENST00000398015	NM_004441.4	508	Gcc/Tcc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138431116	138431116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	214	334	0	ENST00000289153.2:c.1333G>T	p.Val445Phe	p.V445F	ENST00000289153	NM_006219.2	445	Gtt/Ttt																																																																														
TET2	54790	MSKCC	GRCh37	4	106193827	106193827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	191	299	0	ENST00000380013.4:c.4289G>T	p.Gly1430Val	p.G1430V	ENST00000380013	NM_001127208.2	1430	gGg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151876931	151876931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	147	256	0	ENST00000262189.6:c.7430C>T	p.Pro2477Leu	p.P2477L	ENST00000262189	NM_170606.2	2477	cCt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	194	635	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
ATM	472	MSKCC	GRCh37	11	108204633	108204633	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	43	306	0	ENST00000278616.4:c.7948G>C	p.Asp2650His	p.D2650H	ENST00000278616	NM_000051.3	2650	Gac/Cac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929025	44929025	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	162	506	0	ENST00000377967.4:c.2125C>T	p.Gln709Ter	p.Q709*	ENST00000377967	NM_021140.2	709	Caa/Taa																																																																														
BTK	695	MSKCC	GRCh37	X	100615730	100615730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	69	626	0	ENST00000308731.7:c.602C>A	p.Pro201Gln	p.P201Q	ENST00000308731	NM_000061.2	201	cCa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	165	547	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
ATM	472	MSKCC	GRCh37	11	108151863	108151863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	198	428	0	ENST00000278616.4:c.3544G>C	p.Glu1182Gln	p.E1182Q	ENST00000278616	NM_000051.3	1182	Gag/Cag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18443940	18443940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	106	312	1	ENST00000266497.5:c.913C>T	p.Pro305Ser	p.P305S	ENST00000266497		305	Cca/Tca																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038130	128038130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	143	438	0	ENST00000285398.2:c.1420G>C	p.Asp474His	p.D474H	ENST00000285398	NM_000122.1	474	Gat/Cat																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98238339	98238339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	132	370	0	ENST00000331920.6:c.1705G>T	p.Ala569Ser	p.A569S	ENST00000331920	NM_000264.3	569	Gct/Tct																																																																														
FLT1	2321	MSKCC	GRCh37	13	28896455	28896455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	45	320	0	ENST00000282397.4:c.2995C>A	p.Leu999Met	p.L999M	ENST00000282397	NM_002019.4	999	Ctg/Atg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11308028	11308028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	72	531	0	ENST00000361445.4:c.964G>C	p.Val322Leu	p.V322L	ENST00000361445	NM_004958.3	322	Gta/Cta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097736	27097737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	129	460	0	ENST00000324856.7:c.3329dup	p.Glu1111ArgfsTer12	p.E1111Rfs*12	ENST00000324856	NM_006015.4	1109	cgg/cGgg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72241855	72241855	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	92	253	0	ENST00000357731.5:c.535G>T	p.Ala179Ser	p.A179S	ENST00000357731	NM_173808.2	179	Gca/Tca																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176054925	176054925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	117	380	0	ENST00000367669.3:c.1128G>T	p.Met376Ile	p.M376I	ENST00000367669	NM_022457.5	376	atG/atT																																																																														
TET1	80312	MSKCC	GRCh37	10	70432660	70432660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	154	396	0	ENST00000373644.4:c.4682G>T	p.Cys1561Phe	p.C1561F	ENST00000373644	NM_030625.2	1561	tGt/tTt																																																																														
WT1	7490	MSKCC	GRCh37	11	32414299	32414299	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	129	383	0	ENST00000332351.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000332351	NM_024426.4	418	Gag/Aag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948755	71948755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	353	615	0	ENST00000298229.2:c.3467G>T	p.Arg1156Leu	p.R1156L	ENST00000298229	NM_001567.3	1156	cGg/cTg																																																																														
ATM	472	MSKCC	GRCh37	11	108163459	108163459	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	183	614	0	ENST00000278616.4:c.4550T>A	p.Leu1517His	p.L1517H	ENST00000278616	NM_000051.3	1517	cTt/cAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343561	118343561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	238	386	0	ENST00000534358.1:c.1687C>G	p.Pro563Ala	p.P563A	ENST00000534358	NM_005933.3	563	Cca/Gca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344660	118344660	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	236	404	0	ENST00000534358.1:c.2786A>T	p.Lys929Ile	p.K929I	ENST00000534358	NM_005933.3	929	aAa/aTa																																																																														
RAD52	5893	MSKCC	GRCh37	12	1022596	1022596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	46	535	1	ENST00000358495.3:c.1218G>C	p.Lys406Asn	p.K406N	ENST00000358495	NM_134424.2	406	aaG/aaC																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858895	57858895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	205	496	0	ENST00000228682.2:c.391C>A	p.Pro131Thr	p.P131T	ENST00000228682	NM_005269.2	131	Cca/Aca																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861886	57861886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	120	444	0	ENST00000228682.2:c.1187G>T	p.Arg396Leu	p.R396L	ENST00000228682	NM_005269.2	396	cGg/cTg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69218396	69218396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	64	448	0	ENST00000462284.1:c.488C>G	p.Ser163Cys	p.S163C	ENST00000462284	NM_002392.5	163	tCt/tGt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562234	21562234	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	78	784	1	ENST00000382592.4:c.1685A>T	p.Lys562Met	p.K562M	ENST00000382592	NM_014572.2	562	aAg/aTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423579	88423579	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	171	516	0	ENST00000360948.2:c.2256T>A	p.Asp752Glu	p.D752E	ENST00000360948	NM_001012338.2	752	gaT/gaA																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641506	23641506	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	102	634	1	ENST00000261584.4:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000261584	NM_024675.3	657	Gag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660599	67660599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	70	595	2	ENST00000264010.4:c.1499G>T	p.Cys500Phe	p.C500F	ENST00000264010	NM_006565.3	500	tGt/tTt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671698	67671698	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	71	524	0	ENST00000264010.4:c.2107G>T	p.Glu703Ter	p.E703*	ENST00000264010	NM_006565.3	703	Gag/Tag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972454	81972454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	82	478	0	ENST00000359376.3:c.3247C>A	p.Pro1083Thr	p.P1083T	ENST00000359376	NM_002661.3	1083	Ccc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577339	7578192	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGAGTGGGAGCAGTAAGGAGATTCCCCGCCGGGGATGTGATGAGAGGTGGATGGGTAGTAGTATGGAAGAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCAACCTAGGAGATAACACAGGCCCAAGATGAGGCCAGTGCGCCTTGGGGAGACCTGTGGCAAGCAGGGGAGGCCTTTTTTTTTTTTTTTTGAGATGGAATCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAAGCTCCACCGCCCAGGTTCACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCAGCACCACGCCCGGCTAATTTTTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCGTTAGCCAGGATGGTCTCGATCTCCCAACCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAG	ACTGAGTGGGAGCAGTAAGGAGATTCCCCGCCGGGGATGTGATGAGAGGTGGATGGGTAGTAGTATGGAAGAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCAACCTAGGAGATAACACAGGCCCAAGATGAGGCCAGTGCGCCTTGGGGAGACCTGTGGCAAGCAGGGGAGGCCTTTTTTTTTTTTTTTTGAGATGGAATCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAAGCTCCACCGCCCAGGTTCACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCAGCACCACGCCCGGCTAATTTTTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCGTTAGCCAGGATGGTCTCGATCTCCCAACCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAG	-			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	90	146	0	ENST00000269305.4:c.657_782+160del		p.X219_splice	ENST00000269305	NM_001126112.2	219																																																																															
NF1	4763	MSKCC	GRCh37	17	29556167	29556167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	21	99	1	ENST00000358273.4:c.2534G>T	p.Cys845Phe	p.C845F	ENST00000358273	NM_001042492.2	845	tGt/tTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246107	41246107	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	128	623	0	ENST00000357654.3:c.1441C>G	p.Leu481Val	p.L481V	ENST00000357654	NM_007294.3	481	Cta/Gta																																																																														
BRCA1	672	MSKCC	GRCh37	17	41251895	41251895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	84	408	0	ENST00000357654.3:c.444G>T	p.Gln148His	p.Q148H	ENST00000357654	NM_007294.3	148	caG/caT																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78727845	78727845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	67	611	0	ENST00000306801.3:c.690G>C	p.Gln230His	p.Q230H	ENST00000306801	NM_020761.2	230	caG/caC																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39584318	39584318	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	62	223	0	ENST00000262039.4:c.985-2A>T		p.X329_splice	ENST00000262039	NM_002647.2	329																																																																															
STK11	6794	MSKCC	GRCh37	19	1218439	1218439	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	159	525	0	ENST00000326873.7:c.314T>C	p.Leu105Ser	p.L105S	ENST00000326873	NM_000455.4	105	tTa/tCa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599904	10599904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	175	558	0	ENST00000171111.5:c.1672G>T	p.Gly558Trp	p.G558W	ENST00000171111	NM_203500.1	558	Ggg/Tgg																																																																														
AKT2	208	MSKCC	GRCh37	19	40741876	40741876	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	222	580	0	ENST00000392038.2:c.1096G>C	p.Glu366Gln	p.E366Q	ENST00000392038	NM_001626.4	366	Gag/Cag																																																																														
ERF	2077	MSKCC	GRCh37	19	42753534	42753534	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	192	555	0	ENST00000222329.4:c.730C>A	p.Pro244Thr	p.P244T	ENST00000222329	NM_006494.2	244	Ccc/Acc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52705251	52705251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	142	468	1	ENST00000322088.6:c.133G>A	p.Glu45Lys	p.E45K	ENST00000322088	NM_014225.5	45	Gaa/Aaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967075	25967075	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	205	495	0	ENST00000435504.4:c.2131A>G	p.Arg711Gly	p.R711G	ENST00000435504		711	Aga/Gga																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719490	61719490	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	192	518	0	ENST00000401558.2:c.1693G>C	p.Val565Leu	p.V565L	ENST00000401558	NM_003400.3	565	Gta/Cta																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172074	99172074	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	179	482	0	ENST00000074304.5:c.1640A>T	p.Lys547Met	p.K547M	ENST00000074304	NM_001134224.1	547	aAg/aTg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198272771	198272771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	64	540	0	ENST00000335508.6:c.1190G>T	p.Arg397Leu	p.R397L	ENST00000335508	NM_012433.2	397	cGc/cTc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433518	138433518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	153	392	0	ENST00000289153.2:c.1094G>T	p.Cys365Phe	p.C365F	ENST00000289153	NM_006219.2	365	tGt/tTt																																																																														
ATR	545	MSKCC	GRCh37	3	142215310	142215310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	143	458	1	ENST00000350721.4:c.5791G>T	p.Ala1931Ser	p.A1931S	ENST00000350721	NM_001184.3	1931	Gct/Tct																																																																														
TET2	54790	MSKCC	GRCh37	4	106157518	106157518	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	86	276	0	ENST00000380013.4:c.2419G>T	p.Glu807Ter	p.E807*	ENST00000380013	NM_001127208.2	807	Gag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250840	153250840	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	44	373	0	ENST00000281708.4:c.1220C>G	p.Ser407Ter	p.S407*	ENST00000281708	NM_033632.3	407	tCa/tGa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876434	35876435	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	148	559	1	ENST00000303115.3:c.1226_1227delinsTT	p.Gly409Val	p.G409V	ENST00000303115	NM_002185.3	409	gGG/gTT																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751153	57751153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	55	342	0	ENST00000274289.3:c.1714C>A	p.Leu572Met	p.L572M	ENST00000274289	NM_006622.3	572	Ctg/Atg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79965947	79965947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	112	497	0	ENST00000265081.6:c.611G>T	p.Gly204Val	p.G204V	ENST00000265081	NM_002439.4	204	gGa/gTa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109415091	109415091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	181	697	0	ENST00000436639.2:c.186G>T	p.Leu62Phe	p.L62F	ENST00000436639	NM_014454.2	62	ttG/ttT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099508	157099508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	50	230	0	ENST00000346085.5:c.445C>A	p.Gln149Lys	p.Q149K	ENST00000346085	NM_020732.3	149	Cag/Aag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2998134	2998134	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	136	685	2	ENST00000396946.4:c.7G>T	p.Gly3Ter	p.G3*	ENST00000396946	NM_032415.4	3	Gga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508374	106508374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	144	249	0	ENST00000359195.3:c.368G>T	p.Arg123Leu	p.R123L	ENST00000359195	NM_002649.2	123	cGc/cTc																																																																														
TCEB1	6921	MSKCC	GRCh37	8	74868221	74868221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	69	225	0	ENST00000284811.8:c.73G>T	p.Asp25Tyr	p.D25Y	ENST00000284811		25	Gat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404593	8404593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	41	337	0	ENST00000356435.5:c.4154G>C	p.Arg1385Thr	p.R1385T	ENST00000356435		1385	aGa/aCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500815	8500816	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	150	425	0	ENST00000356435.5:c.2066_2067delinsAA	p.Ala689Glu	p.A689E	ENST00000356435		689	gCC/gAA																																																																														
ABL1	25	MSKCC	GRCh37	9	133760186	133760186	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	123	467	0	ENST00000318560.5:c.2509G>T	p.Gly837Ter	p.G837*	ENST00000318560	NM_005157.4	837	Gga/Tga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239959	53239959	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	159	303	0	ENST00000375401.3:c.1482C>G	p.Ile494Met	p.I494M	ENST00000375401	NM_004187.3	494	atC/atG																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	154	520	0	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220644	1220644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	238	827	1	ENST00000326873.7:c.662C>T	p.Pro221Leu	p.P221L	ENST00000326873	NM_000455.4	221	cCg/cTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106164773	106164773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	138	400	3	ENST00000380013.4:c.3641G>A	p.Arg1214Gln	p.R1214Q	ENST00000380013	NM_001127208.2	1214	cGg/cAg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135319	30135319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	21	458	0	ENST00000331968.5:c.499C>G	p.Leu167Val	p.L167V	ENST00000331968	NM_002742.2	167	Ctg/Gtg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	186	336	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	215	489	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	524	673	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432923	432925	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0034497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	102	470	0	ENST00000399788.2:c.1991_1993del	p.Glu664del	p.E664del	ENST00000399788	NM_001042603.1	664	gAAGtg/gtg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911155	29911155	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	103	488	0	ENST00000376809.5:c.454G>T	p.Glu152Ter	p.E152*	ENST00000376809	NM_002116.7	152	Gag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29665043	29665043	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0034498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	218	468	0	ENST00000358273.4:c.6705del	p.Arg2235SerfsTer30	p.R2235Sfs*30	ENST00000358273	NM_001042492.2	2235	agA/ag																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911284	29911285	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0034498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	20	271	0	ENST00000376809.5:c.584dup	p.Tyr195Ter	p.Y195*	ENST00000376809	NM_002116.7	195	tac/tAac																																																																														
ATRX	546	MSKCC	GRCh37	X	76776371	76776372	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0034498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	215	544	0	ENST00000373344.5:c.7094_7095del	p.Ser2365Ter	p.S2365*	ENST00000373344	NM_000489.3	2365	tCA/t																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155322	185155322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	121	393	0	ENST00000265026.3:c.563G>A	p.Arg188Gln	p.R188Q	ENST00000265026	NM_004721.4	188	cGg/cAg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131976443	131976443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	435	512	0	ENST00000265335.6:c.3698C>T	p.Pro1233Leu	p.P1233L	ENST00000265335		1233	cCa/cTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404194	139404194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	128	562	0	ENST00000277541.6:c.2960G>T	p.Cys987Phe	p.C987F	ENST00000277541	NM_017617.3	987	tGc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	318	664	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	39	183	1				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	10	401	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	173	493	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106072	27106072	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	103	407	0	ENST00000324856.7:c.5683G>T	p.Glu1895Ter	p.E1895*	ENST00000324856	NM_006015.4	1895	Gag/Tag																																																																														
TET1	80312	MSKCC	GRCh37	10	70333873	70333873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	57	259	1	ENST00000373644.4:c.1778T>C	p.Val593Ala	p.V593A	ENST00000373644	NM_030625.2	593	gTc/gCc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374618	118374619	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	102	329	0	ENST00000534358.1:c.8013dup	p.Asp2672ArgfsTer2	p.D2672Rfs*2	ENST00000534358	NM_005933.3	2671	gcc/gCcc																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281165	49281165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	180	592	1	ENST00000282018.3:c.212C>G	p.Thr71Arg	p.T71R	ENST00000282018	NM_020377.2	71	aCa/aGa																																																																														
BCL6	604	MSKCC	GRCh37	3	187449624	187449624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	70	359	0	ENST00000232014.4:c.256C>T	p.Leu86Phe	p.L86F	ENST00000232014	NM_001130845.1	86	Ctc/Ttc																																																																														
ABL1	25	MSKCC	GRCh37	9	133737085	133738107	+	intron_variant	Intron	DEL	CTGAATGCCTAGTCATGATTTTAAGTCTTCTTTCCACCTTCAGTGATGGTTGGCTACCCTGAGCAAGCCAGTAGATTCAGTTATGTGCCTGGAGTCCAGATGTTTTATGTGGATTTTTCATGTGGAATTGTTTTTGGTAAGGAAGTATTCCCTTGCCACACCAATGAAAAGAGAAGAAAACAGGTAGCTGGCACCCACTGCATTGTTGCTTTCTGCCAGCCTGCTCCTTCTCCTTCCTCTCCAGCTCTGTTGTGTCCAGATGCAAACTCTACATGCAGGGTTTGACCCTAGGTCCTCACCTGCTGTAGCTCTCACACGGGGACCGAATGCTCTTGTGTCGTAAATCCTTCCTTTTGCTTCCTCGTGTTGGATGTGTTTAGTGGTTTTCATCTTCTGGTCACTATTTCATTCTAGGTTTATCCCCTTTAAATTATAAATTAAATGAATTCTTCGCTTTTCCTACCAGCAACTACCCACCAAGTTCTACCATGTGTTAATTTAATCAACAGTTATTTATTGAGTACTTATTACATGTTGATTTCCTGTTCTCAACATTGGAATGAAGACAGCTTAGGGTTCTGCTTTCATGAAGCTTGCATGCTCTTAGGTGGAGACAGACAGTAATTAAGCAGATAAACAGGAAATTATGAGCTAGTAGTGGGTCCATTGCTGAGAAGTAAGACAGGTGGTAGGATGACCCGTGCCGTGTGATGACTTTAGATTGGGTGGTTGGGGAAGACTTCACGGACCTTAAAACTGGCCTTGGAACGGGAAGCGAGAACTGGGCACGGAAGATGAGGGAGTGGGAGATTTCAGGCAGAGGGAGCAGCAGCAGGTACAGAGGCCCTGAGGCCTTTTATTGTGTCTTTTTGCTTGAGCGAGTAACTTAGAGCACACGTAGAGAAAGACAGCAGAAGTGATCTTCTAAACACTCTGTCCTGTGTGGAGAGCTCCTTATGTGAGATTTTGCTGTGTAGTGAATTAAGGCTCAGCCAAACTGGCTCACGTGAGCTCTTTGAGCTT	CTGAATGCCTAGTCATGATTTTAAGTCTTCTTTCCACCTTCAGTGATGGTTGGCTACCCTGAGCAAGCCAGTAGATTCAGTTATGTGCCTGGAGTCCAGATGTTTTATGTGGATTTTTCATGTGGAATTGTTTTTGGTAAGGAAGTATTCCCTTGCCACACCAATGAAAAGAGAAGAAAACAGGTAGCTGGCACCCACTGCATTGTTGCTTTCTGCCAGCCTGCTCCTTCTCCTTCCTCTCCAGCTCTGTTGTGTCCAGATGCAAACTCTACATGCAGGGTTTGACCCTAGGTCCTCACCTGCTGTAGCTCTCACACGGGGACCGAATGCTCTTGTGTCGTAAATCCTTCCTTTTGCTTCCTCGTGTTGGATGTGTTTAGTGGTTTTCATCTTCTGGTCACTATTTCATTCTAGGTTTATCCCCTTTAAATTATAAATTAAATGAATTCTTCGCTTTTCCTACCAGCAACTACCCACCAAGTTCTACCATGTGTTAATTTAATCAACAGTTATTTATTGAGTACTTATTACATGTTGATTTCCTGTTCTCAACATTGGAATGAAGACAGCTTAGGGTTCTGCTTTCATGAAGCTTGCATGCTCTTAGGTGGAGACAGACAGTAATTAAGCAGATAAACAGGAAATTATGAGCTAGTAGTGGGTCCATTGCTGAGAAGTAAGACAGGTGGTAGGATGACCCGTGCCGTGTGATGACTTTAGATTGGGTGGTTGGGGAAGACTTCACGGACCTTAAAACTGGCCTTGGAACGGGAAGCGAGAACTGGGCACGGAAGATGAGGGAGTGGGAGATTTCAGGCAGAGGGAGCAGCAGCAGGTACAGAGGCCCTGAGGCCTTTTATTGTGTCTTTTTGCTTGAGCGAGTAACTTAGAGCACACGTAGAGAAAGACAGCAGAAGTGATCTTCTAAACACTCTGTCCTGTGTGGAGAGCTCCTTATGTGAGATTTTGCTGTGTAGTGAATTAAGGCTCAGCCAAACTGGCTCACGTGAGCTCTTTGAGCTT	-			P-0034557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	23	0	0	ENST00000318560.5:c.550-1065_550-43del		p.*184*	ENST00000318560	NM_005157.4																																																																																
BCOR	54880	MSKCC	GRCh37	X	39933945	39933945	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0034557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	159	322	0	ENST00000378444.4:c.654C>G	p.Tyr218Ter	p.Y218*	ENST00000378444	NM_001123385.1	218	taC/taG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	171	488	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	194	603	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0034566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	86	331	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411735	63411735	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	132	354	0	ENST00000330258.3:c.1432G>T	p.Gly478Ter	p.G478*	ENST00000330258	NM_152424.3	478	Gga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0034579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	302	347	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520177	9520177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	280	464	0	ENST00000353224.5:c.2092C>T	p.Pro698Ser	p.P698S	ENST00000353224	NM_177990.2	698	Cca/Tca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653842	89653842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	185	466	0	ENST00000371953.3:c.140G>A	p.Arg47Lys	p.R47K	ENST00000371953	NM_000314.4	47	aGg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0034579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	103	389	1				ENST00000310581	NM_198253.2																																																																																
ETV6	2120	MSKCC	GRCh37	12	12037463	12037463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	179	468	2	ENST00000396373.4:c.1094C>T	p.Ser365Phe	p.S365F	ENST00000396373	NM_001987.4	365	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562997	29562997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	224	600	0	ENST00000358273.4:c.3932C>T	p.Ser1311Phe	p.S1311F	ENST00000358273	NM_001042492.2	1311	tCc/tTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15379805	15379805	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0034579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	245	614	0	ENST00000263377.2:c.334A>T	p.Lys112Ter	p.K112*	ENST00000263377	NM_058243.2	112	Aag/Tag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37035124	37035124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	189	403	0	ENST00000231790.2:c.86C>G	p.Ala29Gly	p.A29G	ENST00000231790	NM_000249.3	29	gCt/gGt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979469	2979469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	253	684	1	ENST00000396946.4:c.778C>T	p.Arg260Trp	p.R260W	ENST00000396946	NM_032415.4	260	Cgg/Tgg																																																																														
MET	4233	MSKCC	GRCh37	7	116403103	116403103	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0034579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	153	404	0	ENST00000397752.3:c.2365-1G>C		p.X789_splice	ENST00000397752	NM_000245.2	789																																																																															
ZRSR2	8233	MSKCC	GRCh37	X	15840867	15840867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	43	184	0	ENST00000307771.7:c.951A>G	p.Ile317Met	p.I317M	ENST00000307771	NM_005089.3	317	atA/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	445	567	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	179	482	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	208	472	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	208	472	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44948987	44948987	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	134	174	0	ENST00000377967.4:c.3549-1G>A		p.X1183_splice	ENST00000377967	NM_021140.2	1183																																																																															
JAK1	3716	MSKCC	GRCh37	1	65325881	65325881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	136	294	0	ENST00000342505.4:c.1241G>T	p.Arg414Leu	p.R414L	ENST00000342505	NM_002227.2	414	cGg/cTg																																																																														
LMO1	4004	MSKCC	GRCh37	11	8246247	8246247	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	98	409	0	ENST00000335790.3:c.387C>G	p.Phe129Leu	p.F129L	ENST00000335790	NM_002315.2	129	ttC/ttG																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18478033	18478033	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	116	306	1	ENST00000266497.5:c.1272+1G>T		p.X424_splice	ENST00000266497		424																																																																															
BLM	641	MSKCC	GRCh37	15	91333970	91333970	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs150475674		P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	153	493	0	ENST00000355112.3:c.2915G>T	p.Gly972Val	p.G972V	ENST00000355112	NM_000057.2	972	gGt/gTt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357037	89357037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	125	411	0	ENST00000301030.4:c.597C>G	p.Phe199Leu	p.F199L	ENST00000301030	NM_001256183.1	199	ttC/ttG																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15989741	15989741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	121	273	0	ENST00000268712.3:c.3032C>T	p.Pro1011Leu	p.P1011L	ENST00000268712	NM_006311.3	1011	cCa/cTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212568898	212568898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	80	327	0	ENST00000342788.4:c.1220G>T	p.Trp407Leu	p.W407L	ENST00000342788	NM_005235.2	407	tGg/tTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445055	89445055	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	83	379	0	ENST00000336596.2:c.1375G>C	p.Glu459Gln	p.E459Q	ENST00000336596	NM_005233.5	459	Gaa/Caa																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186505297	186505297	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	123	295	0	ENST00000323963.5:c.923A>G	p.Asp308Gly	p.D308G	ENST00000323963		308	gAc/gGc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80074586	80074586	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs10067975		P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	177	449	0	ENST00000265081.6:c.2366A>G	p.Tyr789Cys	p.Y789C	ENST00000265081	NM_002439.4	789	tAc/tGc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80074600	80074600	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	190	464	0	ENST00000265081.6:c.2380C>G	p.Gln794Glu	p.Q794E	ENST00000265081	NM_002439.4	794	Cag/Gag																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839834	27839834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	135	459	0	ENST00000328488.2:c.260G>A	p.Ser87Asn	p.S87N	ENST00000328488	NM_003533.2	87	aGc/aAc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982046	93982046	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	119	410	0	ENST00000369303.4:c.1419C>G	p.Ile473Met	p.I473M	ENST00000369303	NM_004440.3	473	atC/atG																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413133	139413134	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	554	744	0	ENST00000277541.6:c.1008dup	p.Asp337Ter	p.D337*	ENST00000277541	NM_017617.3	336	-/T																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942733	44942733	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	192	297	0	ENST00000377967.4:c.3313A>G	p.Lys1105Glu	p.K1105E	ENST00000377967	NM_021140.2	1105	Aaa/Gaa																																																																														
ATM	472	MSKCC	GRCh37	11	108224498	108224498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	103	212	0	ENST00000278616.4:c.8677G>C	p.Ala2893Pro	p.A2893P	ENST00000278616	NM_000051.3	2893	Gct/Cct																																																																														
AR	367	MSKCC	GRCh37	X	66765173	66765173	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	15	216	1	ENST00000374690.3:c.185A>T	p.Gln62Leu	p.Q62L	ENST00000374690	NM_000044.3	62	cAg/cTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508526	106508526	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	147	251	1	ENST00000359195.3:c.520G>T	p.Glu174Ter	p.E174*	ENST00000359195	NM_002649.2	174	Gag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76890135	76890135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	225	477	0	ENST00000373344.5:c.4759G>T	p.Gly1587Cys	p.G1587C	ENST00000373344	NM_000489.3	1587	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574025	7574025	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	406	482	0	ENST00000269305.4:c.1002delG	p.Arg335ValfsTer10	p.R335Vfs*10	ENST00000269305	NM_001126112.2	334	ggG/gg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725039	162725039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	277	431	0	ENST00000367921.3:c.511G>C	p.Asp171His	p.D171H	ENST00000367921	NM_006182.2	171	Gac/Cac																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176050375	176050375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	157	287	0	ENST00000367669.3:c.1190C>A	p.Ser397Tyr	p.S397Y	ENST00000367669	NM_022457.5	397	tCc/tAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48919262	48919262	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	103	179	0	ENST00000267163.4:c.427A>T	p.Lys143Ter	p.K143*	ENST00000267163	NM_000321.2	143	Aaa/Taa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032200	10032200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	398	605	0	ENST00000330684.3:c.623C>A	p.Thr208Asn	p.T208N	ENST00000330684	NM_001134407.1	208	aCt/aAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41564834	41564834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	351	564	0	ENST00000263253.7:c.4135C>A	p.Gln1379Lys	p.Q1379K	ENST00000263253	NM_001429.3	1379	Caa/Aaa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71102918	71102918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	158	209	0	ENST00000318789.4:c.289del	p.Val97CysfsTer5	p.V97Cfs*5	ENST00000318789	NM_032682.5	97	Gtg/tg																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73046189	73046189	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	258	304	0	ENST00000356692.5:c.1A>G	p.Met1?	p.M1?	ENST00000356692		1	Atg/Gtg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629167	187629167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	289	559	0	ENST00000441802.2:c.1815G>T	p.Gln605His	p.Q605H	ENST00000441802	NM_005245.3	605	caG/caT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527854	157527854	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	276	391	0	ENST00000346085.5:c.5579A>T	p.Glu1860Val	p.E1860V	ENST00000346085	NM_020732.3	1860	gAa/gTa																																																																														
MET	4233	MSKCC	GRCh37	7	116412874	116412874	+	intron_variant	Intron	SNP	A	A	T			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	454	780	0	ENST00000397752.3:c.3028+831A>T		p.*1010*	ENST00000397752	NM_000245.2																																																																																
WHSC1L1	54904	MSKCC	GRCh37	8	38187237	38187237	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	559	716	1	ENST00000317025.8:c.1240A>G	p.Thr414Ala	p.T414A	ENST00000317025	NM_023034.1	414	Acc/Gcc																																																																														
NBN	4683	MSKCC	GRCh37	8	90983499	90983499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	123	204	0	ENST00000265433.3:c.604G>C	p.Glu202Gln	p.E202Q	ENST00000265433	NM_002485.4	202	Gaa/Caa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499652	8499652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	231	392	0	ENST00000356435.5:c.2317G>T	p.Ala773Ser	p.A773S	ENST00000356435		773	Gca/Tca																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649659	48649659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	344	652	1	ENST00000376670.3:c.143C>A	p.Thr48Asn	p.T48N	ENST00000376670	NM_002049.3	48	aCt/aAt																																																																														
MED12	9968	MSKCC	GRCh37	X	70341557	70341557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	519	654	0	ENST00000374080.3:c.992C>T	p.Thr331Ile	p.T331I	ENST00000374080		331	aCc/aTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191799	123191799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	151	317	0	ENST00000218089.9:c.1388C>A	p.Thr463Lys	p.T463K	ENST00000218089	NM_001042749.1	463	aCa/aAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123196840	123196840	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	130	334	0	ENST00000218089.9:c.1727C>G	p.Ala576Gly	p.A576G	ENST00000218089	NM_001042749.1	576	gCa/gGa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	102	417	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	36	467	0	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724328	117724328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	59	477	0	ENST00000368508.3:c.551C>T	p.Pro184Leu	p.P184L	ENST00000368508	NM_002944.2	184	cCc/cTc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99179952	99179952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	62	647	0	ENST00000074304.5:c.1895C>T	p.Pro632Leu	p.P632L	ENST00000074304	NM_001134224.1	632	cCg/cTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	25	213	0				ENST00000310581	NM_198253.2																																																																																
NTRK1	4914	MSKCC	GRCh37	1	156851391	156851391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	76	592	0	ENST00000524377.1:c.2348C>T	p.Ala783Val	p.A783V	ENST00000524377	NM_002529.3	783	gCc/gTc																																																																														
RET	5979	MSKCC	GRCh37	10	43572774	43572774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	37	151	0	ENST00000355710.3:c.68G>A	p.Gly23Asp	p.G23D	ENST00000355710	NM_020975.4	23	gGc/gAc																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112767346	112767346	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	21	509	0	ENST00000369452.4:c.1219T>A	p.Leu407Met	p.L407M	ENST00000369452	NM_007373.3	407	Ttg/Atg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344357	118344357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	35	282	0	ENST00000534358.1:c.2483C>T	p.Ser828Leu	p.S828L	ENST00000534358	NM_005933.3	828	tCa/tTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656319	18656319	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	20	409	0	ENST00000266497.5:c.2998C>T	p.Gln1000Ter	p.Q1000*	ENST00000266497		1000	Cag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246246	46246246	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	46	415	0	ENST00000334344.6:c.4340T>A	p.Leu1447Ter	p.L1447*	ENST00000334344	NM_152641.2	1447	tTg/tAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415864	49415864	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	55	457	0	ENST00000301067.7:c.16483A>G	p.Ile5495Val	p.I5495V	ENST00000301067	NM_003482.3	5495	Atc/Gtc																																																																														
BLM	641	MSKCC	GRCh37	15	91354615	91354615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	44	375	0	ENST00000355112.3:c.4055C>T	p.Ser1352Phe	p.S1352F	ENST00000355112	NM_000057.2	1352	tCc/tTc																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428323	33428323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	88	475	1	ENST00000335858.7:c.464C>T	p.Ser155Phe	p.S155F	ENST00000335858	NM_133629.2	155	tCc/tTc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58734071	58734071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	51	486	0	ENST00000305921.3:c.1129C>T	p.Pro377Ser	p.P377S	ENST00000305921	NM_003620.3	377	Cca/Tca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223454	36223454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	85	724	0	ENST00000222270.7:c.6004C>T	p.Pro2002Ser	p.P2002S	ENST00000222270	NM_014727.1	2002	Ccc/Tcc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248765	212248765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	25	323	0	ENST00000342788.4:c.3502G>A	p.Glu1168Lys	p.E1168K	ENST00000342788	NM_005235.2	1168	Gag/Aag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661957	227661957	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	52	574	0	ENST00000305123.5:c.1498T>G	p.Leu500Val	p.L500V	ENST00000305123	NM_005544.2	500	Ttg/Gtg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259606	89259606	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	34	362	0	ENST00000336596.2:c.750G>A	p.Trp250Ter	p.W250*	ENST00000336596	NM_005233.5	250	tgG/tgA																																																																														
KDR	3791	MSKCC	GRCh37	4	55948154	55948154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	40	504	0	ENST00000263923.4:c.3817G>A	p.Glu1273Lys	p.E1273K	ENST00000263923	NM_002253.2	1273	Gaa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106155515	106155515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	21	335	0	ENST00000380013.4:c.416C>T	p.Pro139Leu	p.P139L	ENST00000380013	NM_001127208.2	139	cCa/cTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181548	32181548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	74	573	0	ENST00000375023.3:c.2237C>T	p.Pro746Leu	p.P746L	ENST00000375023	NM_004557.3	746	cCt/cTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188545	32188545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	184	525	0	ENST00000375023.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000375023	NM_004557.3	304	Gaa/Aaa																																																																														
ARAF	369	MSKCC	GRCh37	X	47426710	47426710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	79	590	0	ENST00000377045.4:c.955G>A	p.Gly319Ser	p.G319S	ENST00000377045	NM_001654.4	319	Ggc/Agc																																																																														
AR	367	MSKCC	GRCh37	X	66766312	66766312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	40	233	1	ENST00000374690.3:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000374690	NM_000044.3	442	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	41	612	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0034626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	41	668	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943380	71943380	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	46	604	0	ENST00000298229.2:c.1712G>A	p.Arg571Gln	p.R571Q	ENST00000298229	NM_001567.3	571	cGg/cAg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662085	227662085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	40	678	0	ENST00000305123.5:c.1370G>A	p.Arg457His	p.R457H	ENST00000305123	NM_005544.2	457	cGc/cAc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732964	30732965	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	30	458	0	ENST00000359013.4:c.1654dup	p.Ala552GlyfsTer14	p.A552Gfs*14	ENST00000359013	NM_001024847.2	551	gag/gaGg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413952	139413952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	56	854	0	ENST00000277541.6:c.808G>A	p.Gly270Ser	p.G270S	ENST00000277541	NM_017617.3	270	Ggt/Agt																																																																														
ATRX	546	MSKCC	GRCh37	X	76855290	76855290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0034628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	116	214	0	ENST00000373344.5:c.5698-1G>A		p.X1900_splice	ENST00000373344	NM_000489.3	1900																																																																															
MEN1	4221	MSKCC	GRCh37	11	64574544	64574564	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGGTTCCCTAAGGCCATG	GCCAGGTTCCCTAAGGCCATG	CCCAGGCCAT			P-0034628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	445	716	2	ENST00000337652.1:c.846_866delinsATGGCCTGGG	p.Met283TrpfsTer35	p.M283Wfs*35	ENST00000337652	NM_130803.2	282	ccCATGGCCTTAGGGAACCTGGCa/ccATGGCCTGGGa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643399	38643399	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0034628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	189	608	0	ENST00000299084.4:c.869C>G	p.Ser290Ter	p.S290*	ENST00000299084	NM_152594.2	290	tCa/tGa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64574564	64574564	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	397	680	0	ENST00000337652.1:c.846del	p.Met283TrpfsTer3	p.M283Wfs*3	ENST00000337652	NM_130803.2	282	ccC/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	43	407	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376803	118376803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	37	460	0	ENST00000534358.1:c.10196C>A	p.Pro3399His	p.P3399H	ENST00000534358	NM_005933.3	3399	cCt/cAt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918596	44918597	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0034639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	191	279	0	ENST00000377967.4:c.1083_1084del	p.Tyr362Ter	p.Y362*	ENST00000377967	NM_021140.2	360	aCT/a																																																																														
APC	324	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	52	226	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0034639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	27	308	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	184	477	1	ENST00000347630.2:c.304T>A	p.Phe102Ile	p.F102I	ENST00000347630	NM_001007230.1	102	Ttc/Atc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47108606	47108606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0034639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	140	311	0	ENST00000409792.3:c.6063G>C	p.Glu2021Asp	p.E2021D	ENST00000409792	NM_014159.6	2021	gaG/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	139	413	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	205	625	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24159112	24159112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	158	319	0	ENST00000263121.7:c.784G>A	p.Val262Ile	p.V262I	ENST00000263121	NM_003073.3	262	Gtc/Atc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0034642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	9	252	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ATM	472	MSKCC	GRCh37	11	108196791	108196791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	34	274	0	ENST00000278616.4:c.6814G>A	p.Glu2272Lys	p.E2272K	ENST00000278616	NM_000051.3	2272	Gaa/Aaa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347299	89347299	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0034642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	53	592	0	ENST00000301030.4:c.5651C>G	p.Ser1884Ter	p.S1884*	ENST00000301030	NM_001256183.1	1884	tCa/tGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106495	27106495	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	47	591	0	ENST00000324856.7:c.6106G>T	p.Glu2036Ter	p.E2036*	ENST00000324856	NM_006015.4	2036	Gaa/Taa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65335085	65335085	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	39	546	0	ENST00000342505.4:c.556G>C	p.Glu186Gln	p.E186Q	ENST00000342505	NM_002227.2	186	Gag/Cag																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871005	12871005	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	27	278	0	ENST00000228872.4:c.232G>C	p.Glu78Gln	p.E78Q	ENST00000228872	NM_004064.3	78	Gag/Cag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482566	56482566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	47	536	0	ENST00000267101.3:c.1023G>C	p.Gln341His	p.Q341H	ENST00000267101	NM_001982.3	341	caG/caC																																																																														
MITF	4286	MSKCC	GRCh37	3	69788806	69788806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	24	286	0	ENST00000352241.4:c.58G>C	p.Glu20Gln	p.E20Q	ENST00000352241	NM_198159.2	20	Gag/Cag																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31521236	31521236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	43	592	0	ENST00000344624.3:c.941C>G	p.Ser314Cys	p.S314C	ENST00000344624		314	tCt/tGt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132522	11132522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	58	554	0	ENST00000344626.4:c.2738C>T	p.Pro913Leu	p.P913L	ENST00000344626	NM_003072.3	913	cCg/cTg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39742704	39742704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	162	394	0	ENST00000361337.2:c.1547C>G	p.Pro516Arg	p.P516R	ENST00000361337	NM_003286.2	516	cCa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577540	7577554	+	inframe_deletion	In_Frame_Del	DEL	GTTCATGCCGCCCAT	GTTCATGCCGCCCAT	-			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	387	604	0	ENST00000269305.4:c.727_741del	p.Met243_Asn247del	p.M243_N247del	ENST00000269305	NM_001126112.2	243	ATGGGCGGCATGAAC/-																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355107	15355107	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	231	788	0	ENST00000263377.2:c.2516T>C	p.Leu839Pro	p.L839P	ENST00000263377	NM_058243.2	839	cTg/cCg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607552	46607552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	208	704	0	ENST00000263734.3:c.1741A>T	p.Ser581Cys	p.S581C	ENST00000263734	NM_001430.4	581	Agt/Tgt																																																																														
ATR	545	MSKCC	GRCh37	3	142177873	142177873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	53	299	0	ENST00000350721.4:c.7430A>G	p.His2477Arg	p.H2477R	ENST00000350721	NM_001184.3	2477	cAt/cGt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152071	55152071	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	177	564	0	ENST00000257290.5:c.2503T>G	p.Cys835Gly	p.C835G	ENST00000257290	NM_006206.4	835	Tgt/Ggt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630302	187630302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	162	572	0	ENST00000441802.2:c.680G>T	p.Arg227Leu	p.R227L	ENST00000441802	NM_005245.3	227	cGt/cTt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372097	55372097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	334	431	1	ENST00000297316.4:c.787C>A	p.Pro263Thr	p.P263T	ENST00000297316	NM_022454.3	263	Ccg/Acg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	193	582	2	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	77	307	1	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140481399	140481399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	106	382	0	ENST00000288602.6:c.1409C>T	p.Thr470Ile	p.T470I	ENST00000288602	NM_004333.4	470	aCa/aTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	306	534	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	262	841	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	400	899	1	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950005	44950005	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	70	293	0	ENST00000377967.4:c.3774G>A	p.Trp1258Ter	p.W1258*	ENST00000377967	NM_021140.2	1258	tgG/tgA																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926878	112926878	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	112	781	0	ENST00000351677.2:c.1498C>T	p.Gln500Ter	p.Q500*	ENST00000351677	NM_002834.3	500	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514570	41514570	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	45	461	0	ENST00000373198.4:c.91G>T	p.Gly31Cys	p.G31C	ENST00000373198	NM_133170.3	31	Ggc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259513	16259513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	72	491	0	ENST00000375759.3:c.6778G>A	p.Glu2260Lys	p.E2260K	ENST00000375759	NM_015001.2	2260	Gag/Aag																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518541	204518541	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	103	305	0	ENST00000367182.3:c.1204G>C	p.Glu402Gln	p.E402Q	ENST00000367182	NM_001278516.1	402	Gaa/Caa																																																																														
CBL	867	MSKCC	GRCh37	11	119144732	119144732	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	74	413	0	ENST00000264033.4:c.745C>T	p.Gln249Ter	p.Q249*	ENST00000264033	NM_005188.3	249	Cag/Tag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863463	57863463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	88	506	0	ENST00000228682.2:c.1558C>T	p.Pro520Ser	p.P520S	ENST00000228682	NM_005269.2	520	Ccc/Tcc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68290324	68290324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	158	480	0	ENST00000487270.1:c.64C>A	p.His22Asn	p.H22N	ENST00000487270	NM_133509.3	22	Cat/Aat																																																																														
MGA	23269	MSKCC	GRCh37	15	42028438	42028438	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	132	476	1	ENST00000219905.7:c.3976del	p.Gln1326ArgfsTer10	p.Q1326Rfs*10	ENST00000219905	NM_001164273.1	1326	Cag/ag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829935	72829935	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	109	766	0	ENST00000268489.5:c.6646A>G	p.Ile2216Val	p.I2216V	ENST00000268489	NM_006885.3	2216	Atc/Gtc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341546	89341546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	79	597	0	ENST00000301030.4:c.7524G>T	p.Gln2508His	p.Q2508H	ENST00000301030	NM_001256183.1	2508	caG/caT																																																																														
XPO1	7514	MSKCC	GRCh37	2	61711222	61711222	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	85	507	0	ENST00000401558.2:c.2527G>T	p.Glu843Ter	p.E843*	ENST00000401558	NM_003400.3	843	Gaa/Taa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128015280	128015280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	46	502	1	ENST00000285398.2:c.2241G>A	p.Met747Ile	p.M747I	ENST00000285398	NM_000122.1	747	atG/atA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408903	41408904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	55	414	0	ENST00000373198.4:c.522dup	p.Gly175TrpfsTer49	p.G175Wfs*49	ENST00000373198	NM_133170.3	174	-/T																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31401618	31401618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	117	676	0	ENST00000344624.3:c.4046G>A	p.Arg1349Lys	p.R1349K	ENST00000344624		1349	aGa/aAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56180513	56180513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	39	321	0	ENST00000399503.3:c.3842C>A	p.Ser1281Tyr	p.S1281Y	ENST00000399503	NM_005921.1	1281	tCt/tAt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517497	176517497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	129	935	0	ENST00000292408.4:c.198G>C	p.Trp66Cys	p.W66C	ENST00000292408	NM_213647.1	66	tgG/tgC																																																																														
TAP1	6890	MSKCC	GRCh37	6	32820834	32820834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	98	812	0	ENST00000354258.4:c.760G>T	p.Val254Leu	p.V254L	ENST00000354258	NM_000593.5	254	Gtg/Ttg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141570582	141570582	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	118	535	0	ENST00000220592.5:c.546C>G	p.Phe182Leu	p.F182L	ENST00000220592	NM_012154.3	182	ttC/ttG																																																																														
JAK2	3717	MSKCC	GRCh37	9	5055739	5055739	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0034650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	153	453	0	ENST00000381652.3:c.1007C>G	p.Ser336Ter	p.S336*	ENST00000381652	NM_004972.3	336	tCa/tGa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	20	524	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056349	27056349	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	23	304	0	ENST00000324856.7:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000324856	NM_006015.4	449	Cag/Tag																																																																														
CCND1	595	MSKCC	GRCh37	11	69456221	69456221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	63	540	0	ENST00000227507.2:c.140G>A	p.Cys47Tyr	p.C47Y	ENST00000227507	NM_053056.2	47	tGt/tAt																																																																														
CCND1	595	MSKCC	GRCh37	11	69456211	69456213	+	missense_variant	Missense_Mutation	ONP	TAC	TAC	CAG			P-0034668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	58	552	0	ENST00000227507.2:c.130_132delinsCAG	p.Tyr44Gln	p.Y44Q	ENST00000227507	NM_053056.2	44	TAC/CAG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0034673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	53	494	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	20	364	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	58	548	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717695	89717696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	27	426	0	ENST00000371953.3:c.723dupT	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	240	-/T																																																																														
PTEN	5728	MSKCC	GRCh37	10	89712018	89712018	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0034673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	32	300	0	ENST00000371953.3:c.634+2T>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119069	70119069	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	31	390	0	ENST00000245479.2:c.642del	p.Ser215ProfsTer4	p.S215Pfs*4	ENST00000245479	NM_000346.3	214	tCc/tc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023781	27023782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	34	363	0	ENST00000324856.7:c.889dup	p.Gln297ProfsTer103	p.Q297Pfs*103	ENST00000324856	NM_006015.4	296	aac/aaCc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673733	176673734	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	44	363	0	ENST00000439151.2:c.4434dup	p.Ala1479SerfsTer6	p.A1479Sfs*6	ENST00000439151	NM_022455.4	1478	gca/gcAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	37	262	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	79	703	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196653	67196653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	45	445	1	ENST00000312629.5:c.182G>A	p.Arg61His	p.R61H	ENST00000312629	NM_003952.2	61	cGc/cAc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110175	3110175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	43	503	0	ENST00000078429.4:c.165C>A	p.Phe55Leu	p.F55L	ENST00000078429	NM_002067.2	55	ttC/ttA																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98240362	98240362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	164	432	0	ENST00000331920.6:c.1322G>A	p.Arg441His	p.R441H	ENST00000331920	NM_000264.3	441	cGc/cAc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874199	155874199	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	133	641	0	ENST00000368323.3:c.332T>A	p.Val111Asp	p.V111D	ENST00000368323	NM_006912.5	111	gTt/gAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162749901	162749901	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0034676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	73	449	0	ENST00000367921.3:c.2434-1G>C		p.X812_splice	ENST00000367921	NM_006182.2	812																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0034678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	141	276	1	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244016	46244016	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	167	399	0	ENST00000334344.6:c.2110C>T	p.Gln704Ter	p.Q704*	ENST00000334344	NM_152641.2	704	Caa/Taa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245868	46245868	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	140	254	0	ENST00000334344.6:c.3962del	p.Leu1321GlnfsTer10	p.L1321Qfs*10	ENST00000334344	NM_152641.2	1321	cTa/ca																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643642	38643642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	228	504	1	ENST00000299084.4:c.1112G>A	p.Cys371Tyr	p.C371Y	ENST00000299084	NM_152594.2	371	tGt/tAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41274897	41274897	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	192	394	0	ENST00000349496.5:c.1147T>G	p.Trp383Gly	p.W383G	ENST00000349496	NM_001904.3	383	Tgg/Ggg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924527	131924528	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0034678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	133	328	0	ENST00000265335.6:c.1208_1209del	p.Arg403ThrfsTer14	p.R403Tfs*14	ENST00000265335		400	gtGAga/gtga																																																																														
PREX2	80243	MSKCC	GRCh37	8	69143603	69143603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	93	223	0	ENST00000288368.4:c.4811G>C	p.Gly1604Ala	p.G1604A	ENST00000288368	NM_024870.2	1604	gGa/gCa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023211	27023220	+	frameshift_variant	Frame_Shift_Del	DEL	ACGCGGGCCC	ACGCGGGCCC	-			P-0034694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	42	191	0	ENST00000324856.7:c.317_326del	p.Asn106IlefsTer5	p.N106Ifs*5	ENST00000324856	NM_006015.4	106	aACGCGGGCCCt/at																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480320	56480320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	116	400	0	ENST00000267101.3:c.427C>A	p.Leu143Met	p.L143M	ENST00000267101	NM_001982.3	143	Ctg/Atg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	103	432	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5265021	5265021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	42	596	0	ENST00000357368.4:c.566C>T	p.Ser189Leu	p.S189L	ENST00000357368	NM_002850.3	189	tCa/tTa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442562	52442573	+	inframe_deletion	In_Frame_Del	DEL	CTTTCGCCGGGA	CTTTCGCCGGGA	-			P-0034694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	55	365	0	ENST00000460680.1:c.172_183del	p.Ser58_Lys61del	p.S58_K61del	ENST00000460680	NM_004656.3	58	TCCCGGCGAAAG/-																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71008403	71008403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	53	280	0	ENST00000318789.4:c.2029G>C	p.Glu677Gln	p.E677Q	ENST00000318789	NM_032682.5	677	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0034694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	24	477	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0034694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	23	392	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419957	41419957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	47	474	1	ENST00000373198.4:c.364G>A	p.Val122Ile	p.V122I	ENST00000373198	NM_133170.3	122	Gtc/Atc																																																																														
VHL	7428	MSKCC	GRCh37	3	10183714	10183715	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0034699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	112	581	0	ENST00000256474.2:c.184_185insAG	p.Val62GlufsTer6	p.V62Efs*6	ENST00000256474	NM_000551.3	61	-/GA																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588814	52588814	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	72	388	0	ENST00000394830.3:c.4214del	p.Pro1405HisfsTer27	p.P1405Hfs*27	ENST00000394830	NM_018313.4	1405	cCa/ca																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818239	32818239	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	128	587	1	ENST00000354258.4:c.1286A>T	p.Glu429Val	p.E429V	ENST00000354258	NM_000593.5	429	gAg/gTg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139820254	139820254	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	136	549	0	ENST00000247668.2:c.1411del	p.Leu471SerfsTer28	p.L471Sfs*28	ENST00000247668	NM_021138.3	469	tgC/tg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	TCC			P-0034706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	114	413	2	ENST00000275493.2:c.2237_2251delinsTCC	p.Glu746_Thr751delinsValPro	p.E746_T751delinsVP	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gTCCca																																																																														
MSH3	4437	MSKCC	GRCh37	5	80168933	80168933	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0034706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	97	804	1	ENST00000265081.6:c.3131-2A>T		p.X1044_splice	ENST00000265081	NM_002439.4	1044																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	554	477	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0034711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	540	689	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0034711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	141	291	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164610	47164610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	144	380	0	ENST00000409792.3:c.1516A>G	p.Arg506Gly	p.R506G	ENST00000409792	NM_014159.6	506	Aga/Gga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532645	187532645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	109	487	0	ENST00000441802.2:c.9748C>T	p.Leu3250Phe	p.L3250F	ENST00000441802	NM_005245.3	3250	Ctt/Ttt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86682702	86682703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	101	234	0	ENST00000274376.6:c.2912dup	p.Leu971PhefsTer3	p.L971Ffs*3	ENST00000274376	NM_002890.2	969	-/T																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	109	591	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579493	7579493	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	211	840	0	ENST00000269305.4:c.194del	p.Arg65LysfsTer58	p.R65Kfs*58	ENST00000269305	NM_001126112.2	65	aGa/aa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860125	151860125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	44	570	0	ENST00000262189.6:c.10537C>T	p.Pro3513Ser	p.P3513S	ENST00000262189	NM_170606.2	3513	Cct/Tct																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205644	38205644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	158	986	0	ENST00000317025.8:c.46A>G	p.Ile16Val	p.I16V	ENST00000317025	NM_023034.1	16	Att/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	112	732	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	40	315	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	141	396	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	141	396	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	141	396	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390917	89390917	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	51	328	0	ENST00000336596.2:c.983C>A	p.Ser328Ter	p.S328*	ENST00000336596	NM_005233.5	328	tCa/tAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174441	11174441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	66	661	0	ENST00000361445.4:c.7234G>T	p.Asp2412Tyr	p.D2412Y	ENST00000361445	NM_004958.3	2412	Gac/Tac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247230	153247230	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	55	382	0	ENST00000281708.4:c.1572G>C	p.Lys524Asn	p.K524N	ENST00000281708	NM_033632.3	524	aaG/aaC																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275858	38275858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	74	506	0	ENST00000425967.3:c.1411G>A	p.Gly471Arg	p.G471R	ENST00000425967	NM_001174067.1	471	Ggg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0034752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	74	984	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
INSR	3643	MSKCC	GRCh37	19	7168066	7168066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	46	596	0	ENST00000302850.5:c.1523C>G	p.Ser508Cys	p.S508C	ENST00000302850	NM_000208.2	508	tCt/tGt																																																																														
MYC	4609	MSKCC	GRCh37	8	128750897	128750897	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	123	667	1	ENST00000377970.2:c.434T>A	p.Ile145Asn	p.I145N	ENST00000377970	NM_002467.4	145	aTc/aAc																																																																														
MET	4233	MSKCC	GRCh37	7	116411895	116411919	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTTTAAGATCTGGGCAGTGAATTA	GTTTTAAGATCTGGGCAGTGAATTA	-			P-0034752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1312	334	1039	0	ENST00000397752.3:c.2888-5_2907del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	150	395	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	529	578	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
APC	324	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	88	267	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	200	519	1	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	175	326	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	176	506	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046611	30046611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	252	663	0	ENST00000331968.5:c.2572C>T	p.Arg858Cys	p.R858C	ENST00000331968	NM_002742.2	858	Cgc/Tgc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609672	117609672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	144	447	1	ENST00000368508.3:c.7027G>A	p.Gly2343Arg	p.G2343R	ENST00000368508	NM_002944.2	2343	Gga/Aga																																																																														
NF1	4763	MSKCC	GRCh37	17	29560052	29560052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	133	316	0	ENST00000358273.4:c.3529G>A	p.Ala1177Thr	p.A1177T	ENST00000358273	NM_001042492.2	1177	Gct/Act																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	102	847	2	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
JUN	3725	MSKCC	GRCh37	1	59248399	59248399	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	36	428	0	ENST00000371222.2:c.344T>G	p.Val115Gly	p.V115G	ENST00000371222	NM_002228.3	115	gTg/gGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714494	40714494	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0034761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	36	449	0	ENST00000373198.4:c.3904-1G>T		p.X1302_splice	ENST00000373198	NM_133170.3	1302																																																																															
VHL	7428	MSKCC	GRCh37	3	10191567	10191586	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTGGAAGACCACCCAAAT	ATCTGGAAGACCACCCAAAT	-			P-0034761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	87	584	0	ENST00000256474.2:c.560_579del	p.Asp187GlyfsTer62	p.D187Gfs*62	ENST00000256474	NM_000551.3	187	gATCTGGAAGACCACCCAAAT/g																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441263	52441263	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	67	589	0	ENST00000460680.1:c.507C>A	p.His169Gln	p.H169Q	ENST00000460680	NM_004656.3	169	caC/caA																																																																														
AR	367	MSKCC	GRCh37	X	66905880	66905880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	66	561	0	ENST00000374690.3:c.1799del	p.Asn600MetfsTer26	p.N600Mfs*26	ENST00000374690	NM_000044.3	599	agA/ag																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	258	568	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	274	772	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	42	100	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653808	89653808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	140	468	0	ENST00000371953.3:c.106G>A	p.Gly36Arg	p.G36R	ENST00000371953	NM_000314.4	36	Gga/Aga																																																																														
MAX	4149	MSKCC	GRCh37	14	65560514	65560514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	251	508	0	ENST00000358664.4:c.83A>G	p.His28Arg	p.H28R	ENST00000358664	NM_002382.4	28	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	239	635	0	ENST00000263967.3:c.1636C>G	p.Gln546Glu	p.Q546E	ENST00000263967	NM_006218.2	546	Cag/Gag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	102	693	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	34	490	1	ENST00000263377.2:c.3061delC	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	192	406	1	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	61	811	7	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435128	110435129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs772322568		P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	192	660	4	ENST00000375856.3:c.3272dup	p.Lys1092GlufsTer233	p.K1092Efs*233	ENST00000375856	NM_003749.2	1091	ccg/ccCg																																																																														
ATRX	546	MSKCC	GRCh37	X	76920173	76920173	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	117	626	6	ENST00000373344.5:c.3904del	p.Arg1302GlufsTer44	p.R1302Efs*44	ENST00000373344	NM_000489.3	1302	Aga/ga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	264	540	0	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861245	57861245	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	244	569	0	ENST00000228682.2:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000228682	NM_005269.2	348	Cga/Tga																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	351	342	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	246	593	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	211	802	2	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
DICER1	23405	MSKCC	GRCh37	14	95599668	95599668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	184	570	2	ENST00000343455.3:c.128C>T	p.Thr43Met	p.T43M	ENST00000343455	NM_177438.2	43	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	41	644	4	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115446	115115446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	224	650	0	ENST00000257566.3:c.880del	p.Ile294Ter	p.I294*	ENST00000257566	NM_016569.3	294	Ata/ta																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692949	89692949	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	168	607	1	ENST00000371953.3:c.437del	p.Leu146Ter	p.L146*	ENST00000371953	NM_000314.4	145	Ttt/tt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099578	157099579	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	48	106	0	ENST00000346085.5:c.521dup	p.Pro177AlafsTer55	p.P177Afs*55	ENST00000346085	NM_020732.3	172	gac/gaCc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087893	27087920	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCACCCAGTGGCCAGTCGGACAGCAT	GGCCACCCAGTGGCCAGTCGGACAGCAT	AA			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	216	748	2	ENST00000324856.7:c.2180_2207delinsAA	p.Arg727GlnfsTer81	p.R727Qfs*81	ENST00000324856	NM_006015.4	727	cGGCCACCCAGTGGCCAGTCGGACAGCATc/cAAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459318	120459318	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	137	408	0	ENST00000256646.2:c.6028-1G>T		p.X2010_splice	ENST00000256646	NM_024408.3	2010																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112526	115112526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	258	790	0	ENST00000257566.3:c.1214G>A	p.Arg405His	p.R405H	ENST00000257566	NM_016569.3	405	cGt/cAt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434388	110434388	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	279	676	0	ENST00000375856.3:c.4012+1G>A		p.X1338_splice	ENST00000375856	NM_003749.2	1338																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78617539	78617539	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	181	425	2	ENST00000306801.3:c.277A>T	p.Met93Leu	p.M93L	ENST00000306801	NM_020761.2	93	Atg/Ttg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214824	36214824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	233	709	1	ENST00000222270.7:c.3250C>T	p.Pro1084Ser	p.P1084S	ENST00000222270	NM_014727.1	1084	Ccc/Tcc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25978948	25978949	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	219	527	0	ENST00000435504.4:c.974dup	p.Ala326SerfsTer3	p.A326Sfs*3	ENST00000435504		325	tca/tcCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936073	178936073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	153	430	1	ENST00000263967.3:c.1615C>T	p.Pro539Ser	p.P539S	ENST00000263967	NM_006218.2	539	Cct/Tct																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683472	182683472	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	103	620	0	ENST00000292782.4:c.73A>C	p.Thr25Pro	p.T25P	ENST00000292782	NM_020640.2	25	Aca/Cca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542230	187542230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	126	504	1	ENST00000441802.2:c.5510A>G	p.Tyr1837Cys	p.Y1837C	ENST00000441802	NM_005245.3	1837	tAt/tGt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0034776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	23	573	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	15	259	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	22	451	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0034776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	26	759	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591004	67591005	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0034776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	16	248	0	ENST00000274335.5:c.1599_1600del	p.Arg534AsnfsTer3	p.R534Nfs*3	ENST00000274335		533	TCt/t																																																																														
SETD2	29072	MSKCC	GRCh37	3	47143020	47143020	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	50	474	0	ENST00000409792.3:c.4943T>A	p.Val1648Asp	p.V1648D	ENST00000409792	NM_014159.6	1648	gTt/gAt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815419	32815419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	65	612	0	ENST00000354258.4:c.1954G>A	p.Gly652Arg	p.G652R	ENST00000354258	NM_000593.5	652	Gga/Aga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	229	428	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223550	55223550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	293	542	1	ENST00000275493.2:c.917C>T	p.Ser306Leu	p.S306L	ENST00000275493	NM_005228.3	306	tCg/tTg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273793	18273793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	152	466	0	ENST00000222254.8:c.1126A>G	p.Lys376Glu	p.K376E	ENST00000222254	NM_005027.3	376	Aag/Gag																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643663	38643663	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	145	661	0	ENST00000299084.4:c.1133A>G	p.His378Arg	p.H378R	ENST00000299084	NM_152594.2	378	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	971	629	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49447841	49447841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	283	578	1	ENST00000301067.7:c.593C>T	p.Ala198Val	p.A198V	ENST00000301067	NM_003482.3	198	gCg/gTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434475	110434475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	429	573	0	ENST00000375856.3:c.3926C>T	p.Pro1309Leu	p.P1309L	ENST00000375856	NM_003749.2	1309	cCg/cTg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	327	557	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808870	1808870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	755	649	5	ENST00000260795.2:c.2302G>A	p.Glu768Lys	p.E768K	ENST00000260795		768	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	408	685	3	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562298	21562298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	266	707	1	ENST00000382592.4:c.1621G>T	p.Glu541Ter	p.E541*	ENST00000382592	NM_014572.2	541	Gag/Tag																																																																														
TET1	80312	MSKCC	GRCh37	10	70412308	70412308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	185	310	1	ENST00000373644.4:c.4418G>T	p.Gly1473Val	p.G1473V	ENST00000373644	NM_030625.2	1473	gGt/gTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123681	46123682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGAG			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	324	306	0	ENST00000334344.6:c.64_67dup	p.Leu23ArgfsTer14	p.L23Rfs*14	ENST00000334344	NM_152641.2	21	gac/gaCGAGc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562031	21562031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	285	907	0	ENST00000382592.4:c.1888G>C	p.Glu630Gln	p.E630Q	ENST00000382592	NM_014572.2	630	Gaa/Caa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434426	110434426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	405	644	0	ENST00000375856.3:c.3975C>G	p.Phe1325Leu	p.F1325L	ENST00000375856	NM_003749.2	1325	ttC/ttG																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792651	33792651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	88	118	0	ENST00000498907.2:c.670C>T	p.His224Tyr	p.H224Y	ENST00000498907	NM_004364.3	224	Cac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1253896	1253896	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	72	537	0	ENST00000310581.5:c.3346G>C	p.Glu1116Gln	p.E1116Q	ENST00000310581	NM_198253.2	1116	Gag/Cag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123687	46123687	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	334	291	0	ENST00000334344.6:c.68T>G	p.Leu23Arg	p.L23R	ENST00000334344	NM_152641.2	23	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0034821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	216	630	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720702	89720702	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	70	86	0	ENST00000371953.3:c.853G>T	p.Glu285Ter	p.E285*	ENST00000371953	NM_000314.4	285	Gaa/Taa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88651942	88651942	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	32	398	0	ENST00000372037.3:c.289G>C	p.Ala97Pro	p.A97P	ENST00000372037	NM_004329.2	97	Gct/Cct																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202134	67202134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	70	618	3	ENST00000312629.5:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000312629	NM_003952.2	413	Cgc/Tgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943945	71943946	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0034821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	26	730	0	ENST00000298229.2:c.1880_1881del	p.Glu627ValfsTer2	p.E627Vfs*2	ENST00000298229	NM_001567.3	626	aaAGag/aaag																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011227	12011228	+	splice_donor_variant	Splice_Site	DEL	GT	GT	-			P-0034821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	60	332	0	ENST00000353533.5:c.633+1_633+2del		p.X211_splice	ENST00000353533	NM_003010.3	211																																																																															
NF1	4763	MSKCC	GRCh37	17	29654672	29654673	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	109	365	0	ENST00000358273.4:c.5426dup	p.Leu1810AlafsTer9	p.L1810Afs*9	ENST00000358273	NM_001042492.2	1808	-/C																																																																														
ALK	238	MSKCC	GRCh37	2	29451932	29451932	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0034821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	49	567	0	ENST00000389048.3:c.2633G>T	p.Gly878Val	p.G878V	ENST00000389048	NM_004304.4	878	gGt/gTt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589599	67589600	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAA			P-0034821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	70	239	0	ENST00000274335.5:c.1364_1365insACA	p.Gln455dup	p.Q455dup	ENST00000274335		455	-/CAA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	147	558	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	155	601	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	189	325	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25990499	25990503	+	frameshift_variant	Frame_Shift_Del	DEL	AGTAA	AGTAA	-			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	247	530	0	ENST00000435504.4:c.724_728del	p.Leu242ArgfsTer11	p.L242Rfs*11	ENST00000435504		242	TTACTa/a																																																																														
KDR	3791	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	135	635	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838032	156838032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	145	767	0	ENST00000524377.1:c.565G>C	p.Ala189Pro	p.A189P	ENST00000524377	NM_002529.3	189	Gcc/Ccc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477083	67477083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	102	447	0	ENST00000327367.4:c.890A>G	p.Tyr297Cys	p.Y297C	ENST00000327367	NM_005902.3	297	tAc/tGc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18966760	18966760	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	58	695	0	ENST00000262803.5:c.1571A>T	p.Asn524Ile	p.N524I	ENST00000262803	NM_002911.3	524	aAc/aTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911551	134911551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	118	465	0	ENST00000398015.3:c.2016G>A	p.Met672Ile	p.M672I	ENST00000398015	NM_004441.4	672	atG/atA																																																																														
KIT	3815	MSKCC	GRCh37	4	55604607	55604607	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	52	467	0	ENST00000288135.5:c.2815T>G	p.Leu939Val	p.L939V	ENST00000288135	NM_000222.2	939	Tta/Gta																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652231	36652231	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	133	530	0	ENST00000244741.5:c.355del	p.Val120CysfsTer28	p.V120Cfs*28	ENST00000244741	NM_000389.4	118	aCc/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	104	435	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	136	464	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502382	186502384	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	52	426	0	ENST00000323963.5:c.109_111del	p.Asp37del	p.D37del	ENST00000323963		35	ttTGAt/ttt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399128	139399128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	149	500	0	ENST00000277541.6:c.5015G>A	p.Arg1672His	p.R1672H	ENST00000277541	NM_017617.3	1672	cGc/cAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118683	115118683	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	126	497	0	ENST00000257566.3:c.657+1G>T		p.X219_splice	ENST00000257566	NM_016569.3	219																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119060	70119060	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	250	382	0	ENST00000245479.2:c.632C>A	p.Ser211Ter	p.S211*	ENST00000245479	NM_000346.3	211	tCg/tAg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933243	49933243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	183	664	1	ENST00000296474.3:c.2867G>A	p.Ser956Asn	p.S956N	ENST00000296474	NM_002447.2	956	aGc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	160	481	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	181	608	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	173	444	3	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108218084	108218084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	116	405	0	ENST00000278616.4:c.8663T>C	p.Ile2888Thr	p.I2888T	ENST00000278616	NM_000051.3	2888	aTa/aCa																																																																														
ATM	472	MSKCC	GRCh37	11	108183216	108183216	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	74	208	0	ENST00000278616.4:c.5998del	p.Ser2000ValfsTer7	p.S2000Vfs*7	ENST00000278616	NM_000051.3	1999	atA/at																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245520	46245520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	98	330	0	ENST00000334344.6:c.3614G>T	p.Gly1205Val	p.G1205V	ENST00000334344	NM_152641.2	1205	gGa/gTa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148512090	148512090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	165	426	0	ENST00000320356.2:c.1588C>A	p.His530Asn	p.H530N	ENST00000320356	NM_004456.4	530	Cat/Aat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732962	44733984	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGGGCCGCCGTCACTCGCCCGGTCGGCTCCGGACGGGCAGTAGCCGCTCTCCCGGGAGGACCGAGCGCGGCTTGTCTCTGGCGGCGGCGGGGCGGGCACCTCGGTTTGGCGCTCTTCGCGCCGCCTCCGCTGGGGCCTCGGGCTCGGGCAGGGACGGGTCGGTGGCGTTCCCTGAGCGTTAACGAGTAAACTGTGTCTGTCTCCACAGCCGCCTCTTTGGGTTCGTGAGATTTCATGAAGATGGCGCCAGGACGAAGGCCCTACTGGGCAAGGTAAGGCAGCTGCGAGTCGGAGCGCGGACACCGTCTCCCTGGCCGGCGCCGCGCTCGCCCCGGGCCCCGCGGCCGGGTCTGTGCTCATTGTGGCCACGGACGATGGTCGAGGGGCTTCCGGAAACTATTTCCTGCCTCTGCTCTCCCCCCACCCCCGGGTACCCTGCTTGCTCCCTTGCGAAATCGCTCTTTTCCTCTTGTAGCTGGAGGAACAGAGACGGGATCGCTTTGGGGCCGGGCTCAACTGGGTCGACACAACTGCCTGCTATTTTACAGCTTTTTGAGGGTAGGCCGATGATCTTCGAGGTGCCTGTTTAGGGTCAAGGGATCGTGAGTGTGTTCAGATTTTCCCAAATTTCGGACTTAACTTGCCTCTACGGGTTTAAAAAAATTCTTTTCCTTCAAGCAGGCTGTTCGTGATGCCTACTGCTAACCAAATGTTTTAGGCTTTCTTGTGTCCCCGCTCCCAGAAGGGGGAAGTTTCACGGAGTTTAGGTCGGTGAAGAGTTTGCATTGGGCTGTTGACATGTATCTCGATTGCAGTGTGTGTTACCTGAAGTTAGGTGACTTGTTTACTTTTTGGGTCTTTTTGGCATAGAAATACCGTAGTTATTTGTAAACGTGTTCTCTTCCTGGAGCCTCATTTCCTGTGTGTCTGACAGGGGAGGCTGGGGAGGATTCGGGGTGTAGTCTTTTTTTATTTGTGTGGAAAGTTGTTGGCACTGTCATTTAGTTAAGTAATGGCTGCTCC	CGGGCCGCCGTCACTCGCCCGGTCGGCTCCGGACGGGCAGTAGCCGCTCTCCCGGGAGGACCGAGCGCGGCTTGTCTCTGGCGGCGGCGGGGCGGGCACCTCGGTTTGGCGCTCTTCGCGCCGCCTCCGCTGGGGCCTCGGGCTCGGGCAGGGACGGGTCGGTGGCGTTCCCTGAGCGTTAACGAGTAAACTGTGTCTGTCTCCACAGCCGCCTCTTTGGGTTCGTGAGATTTCATGAAGATGGCGCCAGGACGAAGGCCCTACTGGGCAAGGTAAGGCAGCTGCGAGTCGGAGCGCGGACACCGTCTCCCTGGCCGGCGCCGCGCTCGCCCCGGGCCCCGCGGCCGGGTCTGTGCTCATTGTGGCCACGGACGATGGTCGAGGGGCTTCCGGAAACTATTTCCTGCCTCTGCTCTCCCCCCACCCCCGGGTACCCTGCTTGCTCCCTTGCGAAATCGCTCTTTTCCTCTTGTAGCTGGAGGAACAGAGACGGGATCGCTTTGGGGCCGGGCTCAACTGGGTCGACACAACTGCCTGCTATTTTACAGCTTTTTGAGGGTAGGCCGATGATCTTCGAGGTGCCTGTTTAGGGTCAAGGGATCGTGAGTGTGTTCAGATTTTCCCAAATTTCGGACTTAACTTGCCTCTACGGGTTTAAAAAAATTCTTTTCCTTCAAGCAGGCTGTTCGTGATGCCTACTGCTAACCAAATGTTTTAGGCTTTCTTGTGTCCCCGCTCCCAGAAGGGGGAAGTTTCACGGAGTTTAGGTCGGTGAAGAGTTTGCATTGGGCTGTTGACATGTATCTCGATTGCAGTGTGTGTTACCTGAAGTTAGGTGACTTGTTTACTTTTTGGGTCTTTTTGGCATAGAAATACCGTAGTTATTTGTAAACGTGTTCTCTTCCTGGAGCCTCATTTCCTGTGTGTCTGACAGGGGAGGCTGGGGAGGATTCGGGGTGTAGTCTTTTTTTATTTGTGTGGAAAGTTGTTGGCACTGTCATTTAGTTAAGTAATGGCTGCTCC	-			P-0034855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	103	324	0	ENST00000377967.4:c.161+4_225+751del		p.X54_splice	ENST00000377967	NM_021140.2	54																																																																															
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0034856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	169	446	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520437	176520437	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	144	611	0	ENST00000292408.4:c.1282T>A	p.Ser428Thr	p.S428T	ENST00000292408	NM_213647.1	428	Tca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	105	294	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175548	112175548	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	91	295	0	ENST00000257430.4:c.4260delC	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1419	agC/ag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119096	70119096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	108	295	0	ENST00000245479.2:c.672del	p.Gly225AlafsTer28	p.G225Afs*28	ENST00000245479	NM_000346.3	223	tCc/tc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570101	95570101	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	209	492	0	ENST00000343455.3:c.3632T>C	p.Val1211Ala	p.V1211A	ENST00000343455	NM_177438.2	1211	gTg/gCg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965388	68965388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	245	665	0	ENST00000288368.4:c.1000G>A	p.Ala334Thr	p.A334T	ENST00000288368	NM_024870.2	334	Gca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	459	590	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	738	798	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	196	399	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	133	371	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	190	314	2	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	30143044	30143044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	414	895	4	ENST00000389048.3:c.482C>T	p.Ala161Val	p.A161V	ENST00000389048	NM_004304.4	161	gCg/gTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757428	40757428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	1207	754	0	ENST00000373198.4:c.2870C>T	p.Pro957Leu	p.P957L	ENST00000373198	NM_133170.3	957	cCg/cTg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533755	63533760	+	inframe_deletion	In_Frame_Del	DEL	GGGAGC	GGGAGC	-			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	583	631	5	ENST00000307078.5:c.1394_1399del	p.Arg465_Ser466del	p.R465_S466del	ENST00000307078	NM_004655.3	465	cGCTCCCcg/ccg																																																																														
BARD1	580	MSKCC	GRCh37	2	215661836	215661836	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	260	403	0	ENST00000260947.4:c.164A>T	p.Asn55Ile	p.N55I	ENST00000260947	NM_000465.2	55	aAc/aTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162397	47162397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	488	499	1	ENST00000409792.3:c.3729A>G	p.Ile1243Met	p.I1243M	ENST00000409792	NM_014159.6	1243	atA/atG																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515173	31515173	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	416	1036	0	ENST00000344624.3:c.1212A>T	p.Glu404Asp	p.E404D	ENST00000344624		404	gaA/gaT																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372215	55372215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	212	292	0	ENST00000297316.4:c.905C>T	p.Ser302Leu	p.S302L	ENST00000297316	NM_022454.3	302	tCg/tTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966680	44966680	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	22	399	1	ENST00000377967.4:c.3904C>T	p.Gln1302Ter	p.Q1302*	ENST00000377967	NM_021140.2	1302	Caa/Taa																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870995	12870995	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	211	337	0	ENST00000228872.4:c.222C>A	p.Tyr74Ter	p.Y74*	ENST00000228872	NM_004064.3	74	taC/taA																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434683	99434683	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	393	697	0	ENST00000268035.6:c.771del	p.Gly258ValfsTer40	p.G258Vfs*40	ENST00000268035	NM_000875.3	257	gCc/gc																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518418	69518418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	22	60	0	ENST00000294312.3:c.227C>T	p.Ala76Val	p.A76V	ENST00000294312	NM_005117.2	76	gCg/gTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44920662	44920662	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0034890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	17	191	0	ENST00000377967.4:c.1423del	p.Gln475SerfsTer13	p.Q475Sfs*13	ENST00000377967	NM_021140.2	475	Cag/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0034894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	849	658	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2636809	2636809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	217	617	1	ENST00000342085.4:c.1258G>T	p.Asp420Tyr	p.D420Y	ENST00000342085	NM_002613.4	420	Gac/Tac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	84	401	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372159	45372159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	105	471	0	ENST00000262160.6:c.1010G>A	p.Arg337His	p.R337H	ENST00000262160	NM_005901.5	337	cGc/cAc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24145494	24145561	+	protein_altering_variant	In_Frame_Del	DEL	TGACCCAGCTGTGATCCATGAGAACGCATCTCAGCCCGAGGTGCTGGTCCCCATCCGGCTGGACATGG	TGACCCAGCTGTGATCCATGAGAACGCATCTCAGCCCGAGGTGCTGGTCCCCATCCGGCTGGACATGG	CTTTC			P-0034900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	91	737	3	ENST00000263121.7:c.513_580delinsCTTTC	p.Asp172_Glu194delinsPheGln	p.D172_E194delinsFQ	ENST00000263121	NM_003073.3	171	caTGACCCAGCTGTGATCCATGAGAACGCATCTCAGCCCGAGGTGCTGGTCCCCATCCGGCTGGACATGGag/caCTTTCag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68930153	68930153	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	80	346	0	ENST00000288368.4:c.213+1G>T		p.X71_splice	ENST00000288368	NM_024870.2	71																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0034901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	28	641	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	84	270	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061274	38061274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	370	654	0	ENST00000250448.2:c.715G>A	p.Gly239Ser	p.G239S	ENST00000250448	NM_004496.3	239	Ggc/Agc																																																																														
NF1	4763	MSKCC	GRCh37	17	29663659	29663659	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	94	267	0	ENST00000358273.4:c.6154G>T	p.Gly2052Ter	p.G2052*	ENST00000358273	NM_001042492.2	2052	Gga/Tga																																																																														
FANCA	2175	MSKCC	GRCh37	16	89813027	89813027	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	122	642	0	ENST00000389301.3:c.3478C>T	p.Gln1160Ter	p.Q1160*	ENST00000389301	NM_000135.2	1160	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630803	187630803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	287	614	0	ENST00000441802.2:c.179G>C	p.Gly60Ala	p.G60A	ENST00000441802	NM_005245.3	60	gGt/gCt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172163	32172163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	117	653	1	ENST00000375023.3:c.2869G>T	p.Ala957Ser	p.A957S	ENST00000375023	NM_004557.3	957	Gcc/Tcc																																																																														
XIAP	331	MSKCC	GRCh37	X	123026582	123026582	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	56	205	0	ENST00000355640.3:c.1058T>G	p.Val353Gly	p.V353G	ENST00000355640		353	gTa/gGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577126	+	protein_altering_variant	In_Frame_Del	DEL	CGCACCT	CGCACCT	A			P-0034944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	229	698	0	ENST00000269305.4:c.812_818delinsT	p.Glu271_Arg273delinsVal	p.E271_R273delinsV	ENST00000269305	NM_001126112.2	271	gAGGTGCGt/gTt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0034947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	142	418	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942739	44942739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	234	301	0	ENST00000377967.4:c.3320delC	p.Pro1107LeufsTer13	p.P1107Lfs*13	ENST00000377967	NM_021140.2	1107	Cct/ct																																																																														
ATM	472	MSKCC	GRCh37	11	108199896	108199896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	73	205	0	ENST00000278616.4:c.7238A>G	p.Lys2413Arg	p.K2413R	ENST00000278616	NM_000051.3	2413	aAg/aGg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459148	120459148	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	230	630	0	ENST00000256646.2:c.6197A>G	p.Asn2066Ser	p.N2066S	ENST00000256646	NM_024408.3	2066	aAt/aGt																																																																														
PARP1	142	MSKCC	GRCh37	1	226555974	226555974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	198	470	0	ENST00000366794.5:c.2203C>A	p.Arg735Ser	p.R735S	ENST00000366794	NM_001618.3	735	Cgc/Agc																																																																														
ATM	472	MSKCC	GRCh37	11	108201059	108201062	+	frameshift_variant	Frame_Shift_Del	DEL	AGTG	AGTG	-			P-0034947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	116	442	0	ENST00000278616.4:c.7426_7429del	p.Ser2476GlufsTer27	p.S2476Efs*27	ENST00000278616	NM_000051.3	2476	AGTGga/ga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123190031	123190032	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0034947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	184	280	0	ENST00000218089.9:c.1251_1252del	p.Tyr418PhefsTer22	p.Y418Ffs*22	ENST00000218089	NM_001042749.1	417	gTT/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	350	711	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	354	696	0	ENST00000171111.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000171111	NM_203500.1	470	Cgt/Tgt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969137	93969137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	40	390	0	ENST00000369303.4:c.1859C>T	p.Ala620Val	p.A620V	ENST00000369303	NM_004440.3	620	gCt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106508	27106508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	125	635	0	ENST00000324856.7:c.6119G>A	p.Gly2040Glu	p.G2040E	ENST00000324856	NM_006015.4	2040	gGg/gAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65311261	65311261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	139	512	0	ENST00000342505.4:c.2050G>T	p.Asp684Tyr	p.D684Y	ENST00000342505	NM_002227.2	684	Gat/Tat																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166577	118166577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	160	320	0	ENST00000369448.3:c.1087G>T	p.Val363Phe	p.V363F	ENST00000369448	NM_017709.3	363	Gtc/Ttc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431079	49431079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	144	683	0	ENST00000301067.7:c.10060G>T	p.Gly3354Trp	p.G3354W	ENST00000301067	NM_003482.3	3354	Ggg/Tgg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89871793	89871793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	247	508	0	ENST00000389301.3:c.604G>C	p.Asp202His	p.D202H	ENST00000389301	NM_000135.2	202	Gac/Cac																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222348	39222348	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	235	665	0	ENST00000402219.2:c.3262A>T	p.Thr1088Ser	p.T1088S	ENST00000402219	NM_005633.3	1088	Aca/Tca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495267	212495267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	70	335	0	ENST00000342788.4:c.1999G>C	p.Val667Leu	p.V667L	ENST00000342788	NM_005235.2	667	Gtg/Ctg																																																																														
MITF	4286	MSKCC	GRCh37	3	70005682	70005682	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	44	144	0	ENST00000352241.4:c.1013+1G>T		p.X338_splice	ENST00000352241	NM_198159.2	338																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89462330	89462330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	76	296	0	ENST00000336596.2:c.1802C>A	p.Thr601Lys	p.T601K	ENST00000336596	NM_005233.5	601	aCa/aAa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151604	55151604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	111	496	0	ENST00000257290.5:c.2390G>A	p.Ser797Asn	p.S797N	ENST00000257290	NM_006206.4	797	aGc/aAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562942	176562942	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	39	279	0	ENST00000439151.2:c.838G>C	p.Asp280His	p.D280H	ENST00000439151	NM_022455.4	280	Gat/Cat																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239759	53239759	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0034948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	270	504	0	ENST00000375401.3:c.1584-1G>T		p.X528_splice	ENST00000375401	NM_004187.3	528																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	79	296	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	117	331	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88659550	88659550	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	128	443	0	ENST00000372037.3:c.334-1G>T		p.X112_splice	ENST00000372037	NM_004329.2	112																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	98	408	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	80	287	2	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	148	559	2	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
IRF4	3662	MSKCC	GRCh37	6	401528	401528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	129	347	1	ENST00000380956.4:c.850G>A	p.Ala284Thr	p.A284T	ENST00000380956	NM_001195286.1	284	Gcc/Acc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	145	500	2	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870985	12870986	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	84	341	0	ENST00000228872.4:c.215dupG	p.Lys73GlnfsTer52	p.K73Qfs*52	ENST00000228872	NM_004064.3	71	gag/gaGg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	134	470	14	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225365174	225365174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	149	410	0	ENST00000264414.4:c.1516C>T	p.Arg506Trp	p.R506W	ENST00000264414	NM_003590.4	506	Cgg/Tgg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652118	36652118	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	205	665	0	ENST00000244741.5:c.243del	p.Arg83GlyfsTer65	p.R83Gfs*65	ENST00000244741	NM_000389.4	80	acG/ac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391799	139391799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	137	632	2	ENST00000277541.6:c.6392delG	p.Gly2131AlafsTer117	p.G2131Afs*117	ENST00000277541	NM_017617.3	2131	gGc/gc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	94	454	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345769	152345769	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	52	308	0	ENST00000359321.1:c.801del	p.Lys267AsnfsTer30	p.K267Nfs*30	ENST00000359321	NM_005431.1	267	aaA/aa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972439	81972439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	159	489	2	ENST00000359376.3:c.3232C>T	p.Arg1078Ter	p.R1078*	ENST00000359376	NM_002661.3	1078	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302390	15302390	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146578114		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	316	925	2	ENST00000263388.2:c.881C>T	p.Thr294Met	p.T294M	ENST00000263388	NM_000435.2	294	aCg/aTg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811605	102811605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	338	611	0	ENST00000307046.8:c.579delA	p.Gly194GlufsTer8	p.G194Efs*8	ENST00000307046	NM_001111285.1	193	aaA/aa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053348	37053348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	112	380	1	ENST00000231790.2:c.588delA	p.Lys196AsnfsTer6	p.K196Nfs*6	ENST00000231790	NM_000249.3	195	Aaa/aa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50920466	50920466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	355	643	1	ENST00000440232.2:c.3158G>A	p.Arg1053His	p.R1053H	ENST00000440232	NM_002691.3	1053	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087513	27087513	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	248	796	0	ENST00000324856.7:c.2090del	p.Pro697ArgfsTer45	p.P697Rfs*45	ENST00000324856	NM_006015.4	696	tCc/tc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	101	408	1	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	101	790	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	129	385	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	197	596	1	ENST00000312629.5:c.870delC	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	201	494	1	ENST00000412585.2:c.626dupC	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																																																														
NF1	4763	MSKCC	GRCh37	17	29701087	29701087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	118	394	0	ENST00000358273.4:c.8434C>T	p.Arg2812Ter	p.R2812*	ENST00000358273	NM_001042492.2	2812	Cga/Tga																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	184	610	0	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302611	15302611	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	231	818	0	ENST00000263388.2:c.747delG	p.Thr250HisfsTer122	p.T250Hfs*122	ENST00000263388	NM_000435.2	249	ggG/gg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231215	98231215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	256	761	0	ENST00000331920.6:c.2068G>A	p.Val690Ile	p.V690I	ENST00000331920	NM_000264.3	690	Gtc/Atc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111167	193111167	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	57	281	1	ENST00000367435.3:c.700C>T	p.Arg234Ter	p.R234*	ENST00000367435	NM_024529.4	234	Cga/Tga																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988426	36988426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	85	240	0	ENST00000354822.5:c.227C>T	p.Ala76Val	p.A76V	ENST00000354822	NM_001079668.2	76	gCg/gTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138127	64138127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	201	492	0	ENST00000334205.4:c.2050C>T	p.Pro684Ser	p.P684S	ENST00000334205	NM_003942.2	684	Ccg/Tcg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1240	316	987	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046022	180046022	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	43	90	0	ENST00000261937.6:c.2849C>T	p.Ala950Val	p.A950V	ENST00000261937	NM_182925.4	950	gCg/gTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944732	71944732	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	117	865	0	ENST00000298229.2:c.2160del	p.Val721CysfsTer37	p.V721Cfs*37	ENST00000298229	NM_001567.3	719	tCc/tc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478609	99478609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	188	566	0	ENST00000268035.6:c.3251G>A	p.Arg1084Gln	p.R1084Q	ENST00000268035	NM_000875.3	1084	cGg/cAg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78435687	78435687	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	72	272	0	ENST00000370768.2:c.133del	p.Ile45LeufsTer9	p.I45Lfs*9	ENST00000370768	NM_003902.3	45	Att/tt																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599165	28599165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	274	906	0	ENST00000253063.3:c.611G>A	p.Cys204Tyr	p.C204Y	ENST00000253063	NM_031459.4	204	tGc/tAc																																																																														
MPL	4352	MSKCC	GRCh37	1	43805659	43805659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	168	472	0	ENST00000372470.3:c.715G>A	p.Gly239Arg	p.G239R	ENST00000372470	NM_005373.2	239	Gga/Aga																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248636	8248636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	133	635	1	ENST00000335790.3:c.251C>T	p.Thr84Ile	p.T84I	ENST00000335790	NM_002315.2	84	aCc/aTc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94926640	94926640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	91	318	0	ENST00000536441.1:c.125C>T	p.Ala42Val	p.A42V	ENST00000536441	NM_144665.3	42	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448379	49448379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	189	651	0	ENST00000301067.7:c.332C>A	p.Pro111His	p.P111H	ENST00000301067	NM_003482.3	111	cCc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133225618	133225618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	43	632	1	ENST00000320574.5:c.4046C>T	p.Ala1349Val	p.A1349V	ENST00000320574	NM_006231.2	1349	gCg/gTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28896487	28896487	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149241190		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	86	329	0	ENST00000282397.4:c.2963G>A	p.Gly988Asp	p.G988D	ENST00000282397	NM_002019.4	988	gGt/gAt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30194817	30194817	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	46	596	1	ENST00000331968.5:c.328T>A	p.Ser110Thr	p.S110T	ENST00000331968	NM_002742.2	110	Tct/Act																																																																														
MGA	23269	MSKCC	GRCh37	15	41989044	41989044	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	148	525	1	ENST00000219905.7:c.1840del	p.Arg614GlufsTer7	p.R614Efs*7	ENST00000219905	NM_001164273.1	612	ggA/gg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632770	23632770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	45	467	1	ENST00000261584.4:c.3026del	p.Pro1009LeufsTer6	p.P1009Lfs*6	ENST00000261584	NM_024675.3	1009	cCt/ct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	75	407	0	ENST00000268489.5:c.10214_10215dup	p.Gly3406ProfsTer80	p.G3406Pfs*80	ENST00000268489	NM_006885.3	3405	-/CC																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438293	56438293	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	148	744	0	ENST00000407977.2:c.700C>T	p.Gln234Ter	p.Q234*	ENST00000407977		234	Cag/Tag																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78921062	78921062	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	188	665	0	ENST00000306801.3:c.3176A>G	p.Tyr1059Cys	p.Y1059C	ENST00000306801	NM_020761.2	1059	tAt/tGt																																																																														
CCNE1	898	MSKCC	GRCh37	19	30311686	30311686	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	128	428	0	ENST00000262643.3:c.540A>C	p.Gln180His	p.Q180H	ENST00000262643	NM_001238.2	180	caA/caC																																																																														
AKT2	208	MSKCC	GRCh37	19	40741863	40741863	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	165	677	0	ENST00000392038.2:c.1109del	p.Pro370ArgfsTer205	p.P370Rfs*205	ENST00000392038	NM_001626.4	370	cCg/cg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25991710	25991710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	203	458	0	ENST00000435504.4:c.532C>A	p.Gln178Lys	p.Q178K	ENST00000435504		178	Cag/Aag																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309744	30309744	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	46	650	0	ENST00000307677.4:c.278C>G	p.Ala93Gly	p.A93G	ENST00000307677	NM_138578.1	93	gCa/gGa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928730	49928730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	121	919	1	ENST00000296474.3:c.3544G>A	p.Val1182Met	p.V1182M	ENST00000296474	NM_002447.2	1182	Gtg/Atg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430478	181430478	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	40	514	0	ENST00000325404.1:c.330C>A	p.Tyr110Ter	p.Y110*	ENST00000325404	NM_003106.3	110	taC/taA																																																																														
NSD1	64324	MSKCC	GRCh37	5	176719015	176719015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1321310131		P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	80	306	0	ENST00000439151.2:c.6319C>T	p.Arg2107Cys	p.R2107C	ENST00000439151	NM_022455.4	2107	Cgc/Tgc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13949265	13949265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	54	196	0	ENST00000405192.2:c.863A>G	p.Lys288Arg	p.K288R	ENST00000405192	NM_001163147.1	288	aAa/aGa																																																																														
MET	4233	MSKCC	GRCh37	7	116339164	116339164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	118	345	0	ENST00000397752.3:c.26C>T	p.Pro9Leu	p.P9L	ENST00000397752	NM_000245.2	9	cCt/cTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129910	69129910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	45	303	0	ENST00000288368.4:c.4664C>A	p.Pro1555Gln	p.P1555Q	ENST00000288368	NM_024870.2	1555	cCa/cAa																																																																														
NBN	4683	MSKCC	GRCh37	8	90983427	90983427	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	72	211	0	ENST00000265433.3:c.676del	p.Thr226HisfsTer5	p.T226Hfs*5	ENST00000265433	NM_002485.4	226	Aca/ca																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5549536	5549536	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	235	740	0	ENST00000397747.3:c.563G>C	p.Arg188Thr	p.R188T	ENST00000397747	NM_025239.3	188	aGa/aCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633347	8633347	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	150	512	1	ENST00000356435.5:c.322A>G	p.Ser108Gly	p.S108G	ENST00000356435		108	Agt/Ggt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231272	98231272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	294	792	0	ENST00000331920.6:c.2011C>A	p.His671Asn	p.H671N	ENST00000331920	NM_000264.3	671	Cac/Aac																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0037479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	53	718	0	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11181324	11181324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	94	526	0	ENST00000361445.4:c.6912G>T	p.Trp2304Cys	p.W2304C	ENST00000361445	NM_004958.3	2304	tgG/tgT																																																																														
ATM	472	MSKCC	GRCh37	11	108170461	108170461	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	54	306	0	ENST00000278616.4:c.5026G>T	p.Gly1676Ter	p.G1676*	ENST00000278616	NM_000051.3	1676	Gga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544137	18544137	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	60	291	0	ENST00000266497.5:c.1954G>T	p.Glu652Ter	p.E652*	ENST00000266497		652	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	75	379	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865032	57865032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	136	828	0	ENST00000228682.2:c.2509C>A	p.Pro837Thr	p.P837T	ENST00000228682	NM_005269.2	837	Ccc/Acc																																																																														
POLE	5426	MSKCC	GRCh37	12	133210953	133210953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	57	516	0	ENST00000320574.5:c.5823G>C	p.Gln1941His	p.Q1941H	ENST00000320574	NM_006231.2	1941	caG/caC																																																																														
MGA	23269	MSKCC	GRCh37	15	42042100	42042100	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	45	529	0	ENST00000219905.7:c.6295C>T	p.Gln2099Ter	p.Q2099*	ENST00000219905	NM_001164273.1	2099	Caa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	42054049	42054049	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	27	249	0	ENST00000219905.7:c.7510+1G>T		p.X2504_splice	ENST00000219905	NM_001164273.1	2504																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339479	339479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	103	798	0	ENST00000262320.3:c.2423G>T	p.Gly808Val	p.G808V	ENST00000262320	NM_003502.3	808	gGc/gTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991913	72991913	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	146	509	0	ENST00000268489.5:c.2132C>G	p.Pro711Arg	p.P711R	ENST00000268489	NM_006885.3	711	cCc/cGc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243932	41243932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	154	583	0	ENST00000357654.3:c.3616G>A	p.Ala1206Thr	p.A1206T	ENST00000357654	NM_007294.3	1206	Gcc/Acc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965864	25965864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	93	618	0	ENST00000435504.4:c.3342G>T	p.Arg1114Ser	p.R1114S	ENST00000435504		1114	agG/agT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32183020	32183020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	88	651	0	ENST00000375023.3:c.2004C>A	p.His668Gln	p.H668Q	ENST00000375023	NM_004557.3	668	caC/caA																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797253	32797253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	147	847	1	ENST00000374899.4:c.1856G>T	p.Arg619Leu	p.R619L	ENST00000374899	NM_018833.2	619	cGg/cTg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907160	101907160	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	30	308	0	ENST00000374994.4:c.1120G>T	p.Gly374Ter	p.G374*	ENST00000374994	NM_004612.2	374	Gga/Tga																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249906	110249906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	109	443	0	ENST00000374672.4:c.769G>T	p.Gly257Cys	p.G257C	ENST00000374672	NM_004235.4	257	Ggc/Tgc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841229	15841229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	82	167	0	ENST00000307771.7:c.1313G>A	p.Gly438Asp	p.G438D	ENST00000307771	NM_005089.3	438	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	81	495	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46740279	46740279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150315374		P-0039715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	111	514	0	ENST00000371975.4:c.1759C>T	p.Arg587Trp	p.R587W	ENST00000371975	NM_003579.3	587	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0039715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	70	393	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578195	7578197	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0039715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	181	660	0	ENST00000269305.4:c.652_654del	p.Val218del	p.V218del	ENST00000269305	NM_001126112.2	218	GTG/-																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106539	27106539	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	159	711	0	ENST00000324856.7:c.6150G>A	p.Trp2050Ter	p.W2050*	ENST00000324856	NM_006015.4	2050	tgG/tgA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944471	40944471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	248	636	0	ENST00000373198.4:c.2031G>T	p.Gln677His	p.Q677H	ENST00000373198	NM_133170.3	677	caG/caT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0039716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	432	550	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	252	566	0	ENST00000269305.4:c.989T>G	p.Leu330Arg	p.L330R	ENST00000269305	NM_001126112.2	330	cTt/cGt																																																																														
HGF	3082	MSKCC	GRCh37	7	81358946	81358946	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1246	77	619	1	ENST00000222390.5:c.1015A>T	p.Met339Leu	p.M339L	ENST00000222390	NM_000601.4	339	Atg/Ttg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119978	70119979	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCGGCA			P-0000631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			216	55	216	0	ENST00000245479.2:c.986_987insACCCGGC	p.Ser330ProfsTer250	p.S330Pfs*250	ENST00000245479	NM_000346.3	327	acc/acCCCGGCAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791853	42791853	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			560	209	950	0	ENST00000575354.2:c.739del	p.Gln247ArgfsTer10	p.Q247Rfs*10	ENST00000575354	NM_015125.3	247	Cag/ag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100379	157100379	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000631-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			201	34	143	0	ENST00000346085.5:c.1316A>G	p.Glu439Gly	p.E439G	ENST00000346085	NM_020732.3	439	gAg/gGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			525	282	686	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			531	171	498	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438535	52438535	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			211	259	656	0	ENST00000460680.1:c.1184C>G	p.Ser395Ter	p.S395*	ENST00000460680	NM_004656.3	395	tCa/tGa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464388	120464388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			724	119	665	0	ENST00000256646.2:c.5258G>C	p.Gly1753Ala	p.G1753A	ENST00000256646	NM_024408.3	1753	gGa/gCa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941234	71941234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			702	656	890	0	ENST00000298229.2:c.1009G>C	p.Asp337His	p.D337H	ENST00000298229	NM_001567.3	337	Gat/Cat																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941285	71941285	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			628	625	849	0	ENST00000298229.2:c.1060G>T	p.Glu354Ter	p.E354*	ENST00000298229	NM_001567.3	354	Gag/Tag																																																																														
CCND2	894	MSKCC	GRCh37	12	4385326	4385340	+	inframe_deletion	In_Frame_Del	DEL	GCTGACCGCGGAGAA	GCTGACCGCGGAGAA	-			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			544	43	455	0	ENST00000261254.3:c.355_369del	p.Thr119_Leu123del	p.T119_L123del	ENST00000261254	NM_001759.3	117	ccGCTGACCGCGGAGAAg/ccg																																																																														
POLE	5426	MSKCC	GRCh37	12	133245268	133245268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			367	133	813	0	ENST00000320574.5:c.1979G>C	p.Gly660Ala	p.G660A	ENST00000320574	NM_006231.2	660	gGa/gCa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032249	10032249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			500	86	701	0	ENST00000330684.3:c.574G>C	p.Asp192His	p.D192H	ENST00000330684	NM_001134407.1	192	Gac/Cac																																																																														
PALB2	79728	MSKCC	GRCh37	16	23637660	23637660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			399	98	628	0	ENST00000261584.4:c.2645G>C	p.Cys882Ser	p.C882S	ENST00000261584	NM_024675.3	882	tGt/tCt																																																																														
NF1	4763	MSKCC	GRCh37	17	29663756	29663756	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			529	115	579	0	ENST00000358273.4:c.6251A>T	p.Tyr2084Phe	p.Y2084F	ENST00000358273	NM_001042492.2	2084	tAc/tTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210830	2210830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			516	67	556	0	ENST00000398665.3:c.1327C>G	p.Gln443Glu	p.Q443E	ENST00000398665	NM_032482.2	443	Cag/Gag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18280082	18280082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			75	51	66	0	ENST00000222254.8:c.2165G>A	p.Gly722Asp	p.G722D	ENST00000222254	NM_005027.3	722	gGc/gAc																																																																														
CASP8	841	MSKCC	GRCh37	2	202151203	202151203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			143	213	303	0	ENST00000358485.4:c.1503C>G	p.Ile501Met	p.I501M	ENST00000358485	NM_001080125.1	501	atC/atG																																																																														
BCL6	604	MSKCC	GRCh37	3	187451389	187451389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	105	432	0	ENST00000232014.4:c.93G>C	p.Leu31Phe	p.L31F	ENST00000232014	NM_001130845.1	31	ttG/ttC																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143326389	143326424	+	inframe_deletion	In_Frame_Del	DEL	CAGACTCTGCTCCACGGGGTGGATTACGGAGATCTG	CAGACTCTGCTCCACGGGGTGGATTACGGAGATCTG	-			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			411	45	449	0	ENST00000262992.4:c.190_225del	p.Gln64_Leu75del	p.Q64_L75del	ENST00000262992	NM_001101669.1	64	CAGATCTCCGTAATCCACCCCGTGGAGCAGAGTCTG/-																																																																														
MSH3	4437	MSKCC	GRCh37	5	80064733	80064733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			200	120	449	0	ENST00000265081.6:c.2164G>C	p.Val722Leu	p.V722L	ENST00000265081	NM_002439.4	722	Gtt/Ctt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821041	32821041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			792	79	912	1	ENST00000354258.4:c.553G>T	p.Ala185Ser	p.A185S	ENST00000354258	NM_000593.5	185	Gcg/Tcg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151917694	151917694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010096-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			200	77	325	0	ENST00000262189.6:c.3626T>C	p.Ile1209Thr	p.I1209T	ENST00000262189	NM_170606.2	1209	aTa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			993	73	900	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			795	53	630	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26974650	26974650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022504-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	62	843	0	ENST00000381527.3:c.994G>A	p.Asp332Asn	p.D332N	ENST00000381527	NM_001260.1	332	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	136	769	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			616	74	423	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0022760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	57	455	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47058705	47058706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			704	48	459	0	ENST00000409792.3:c.7572dup	p.Lys2525Ter	p.K2525*	ENST00000409792	NM_014159.6	2524	-/T																																																																														
RB1	5925	MSKCC	GRCh37	13	48951168	48951168	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0022760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			565	78	386	0	ENST00000267163.4:c.1330C>T	p.Gln444Ter	p.Q444*	ENST00000267163	NM_000321.2	444	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	82	416	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	166	1014	0	ENST00000269305.4:c.400T>C	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	Ttt/Ctt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46602960	46602960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	113	794	0	ENST00000263734.3:c.1018G>T	p.Val340Phe	p.V340F	ENST00000263734	NM_001430.4	340	Gtc/Ttc																																																																														
RHOA	387	MSKCC	GRCh37	3	49405953	49405953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039255-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	204	565	0	ENST00000418115.1:c.185G>A	p.Gly62Glu	p.G62E	ENST00000418115	NM_001664.2	62	gGg/gAg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52662939	52662939	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039255-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	114	330	0	ENST00000394830.3:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000394830	NM_018313.4	472	Cga/Tga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981879	201981879	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039255-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	262	700	0	ENST00000359651.3:c.591delC	p.Thr198ProfsTer56	p.T198Pfs*56	ENST00000359651		197	tCc/tc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716237	243716237	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039255-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			518	48	397	0	ENST00000263826.5:c.957A>C	p.Glu319Asp	p.E319D	ENST00000263826	NM_005465.4	319	gaA/gaC																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858555	57858555	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039255-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			802	110	702	0	ENST00000228682.2:c.293T>C	p.Val98Ala	p.V98A	ENST00000228682	NM_005269.2	98	gTt/gCt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99442757	99442757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039255-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	105	609	0	ENST00000268035.6:c.1154C>T	p.Thr385Met	p.T385M	ENST00000268035	NM_000875.3	385	aCg/aTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643389	52643389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039255-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	31	352	0	ENST00000394830.3:c.2507G>A	p.Arg836Gln	p.R836Q	ENST00000394830	NM_018313.4	836	cGg/cAg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	44	517	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	39	454	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	102	670	3	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	135	382	1	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	373	395	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	109	336	1	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208356	5208356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	76	612	5	ENST00000357368.4:c.5534C>T	p.Pro1845Leu	p.P1845L	ENST00000357368	NM_002850.3	1845	cCg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101054	27101064	+	frameshift_variant	Frame_Shift_Del	DEL	CGACCAGCAGG	CGACCAGCAGG	-			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	89	665	0	ENST00000324856.7:c.4338_4348del	p.Ala1448ProfsTer39	p.A1448Pfs*39	ENST00000324856	NM_006015.4	1446	CGACCAGCAGGc/c																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524608	103524608	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	56	344	0	ENST00000355739.4:c.2739A>C	p.Lys913Asn	p.K913N	ENST00000355739	NM_000123.3	913	aaA/aaC																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120402	70120402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	137	825	0	ENST00000245479.2:c.1404del	p.Tyr468Ter	p.Y468*	ENST00000245479	NM_000346.3	468	taC/ta																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2185903	2185903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	140	604	1	ENST00000398665.3:c.175G>A	p.Val59Ile	p.V59I	ENST00000398665	NM_032482.2	59	Gtt/Att																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164544	36164544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	70	432	2	ENST00000300305.3:c.1331C>T	p.Pro444Leu	p.P444L	ENST00000300305		444	cCc/cTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266065	41266501	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	CTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCC	CTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCC	-			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	89	324	0	ENST00000349496.5:c.65_301del		p.X22_splice	ENST00000349496	NM_001904.3	22	gCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCct/gct																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247246	153247247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	42	397	0	ENST00000281708.4:c.1555dup	p.Tyr519LeufsTer2	p.Y519Lfs*2	ENST00000281708	NM_033632.3	519	tat/tTat																																																																														
ETV1	2115	MSKCC	GRCh37	7	13940455	13940455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	146	263	1	ENST00000405192.2:c.1051C>T	p.Arg351Cys	p.R351C	ENST00000405192	NM_001163147.1	351	Cgt/Tgt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900261	101900261	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	55	383	0	ENST00000374994.4:c.695A>T	p.Lys232Met	p.K232M	ENST00000374994	NM_004612.2	232	aAg/aTg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068424	26068425	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	TAGTAATAATTATAATAC			P-0039654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	12	245	1	ENST00000435504.4:c.65_66insGTATTATAATTATTACTA	p.Glu22_Lys23insTyrTyrAsnTyrTyrTer	p.E22_K23insYYNYY*	ENST00000435504		22	gaa/gaGTATTATAATTATTACTAa																																																																														
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	120	386	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0039659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	130	380	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532867	187532867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	44	481	0	ENST00000441802.2:c.9526G>A	p.Glu3176Lys	p.E3176K	ENST00000441802	NM_005245.3	3176	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857425	9857425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	175	645	0	ENST00000330684.3:c.3976G>A	p.Gly1326Ser	p.G1326S	ENST00000330684	NM_001134407.1	1326	Ggc/Agc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152382159	152382159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	110	429	0	ENST00000206249.3:c.1269G>C	p.Glu423Asp	p.E423D	ENST00000206249	NM_000125.3	423	gaG/gaC																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346139	152346139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	377	587	0	ENST00000359321.1:c.431G>A	p.Cys144Tyr	p.C144Y	ENST00000359321	NM_005431.1	144	tGc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	485	628	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
RB1	5925	MSKCC	GRCh37	13	49027244	49027244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	135	56	0	ENST00000267163.4:c.1811A>G	p.Asp604Gly	p.D604G	ENST00000267163	NM_000321.2	604	gAt/gGt																																																																														
CENPA	1058	MSKCC	GRCh37	2	27015081	27015081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	574	390	0	ENST00000335756.4:c.183G>T	p.Leu61Phe	p.L61F	ENST00000335756	NM_001809.3	61	ttG/ttT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428618	49428618	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	530	506	0	ENST00000301067.7:c.10332T>G	p.Ile3444Met	p.I3444M	ENST00000301067	NM_003482.3	3444	atT/atG																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097218	11097218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	597	741	0	ENST00000344626.4:c.709G>T	p.Gly237Cys	p.G237C	ENST00000344626	NM_003072.3	237	Ggc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743886	40743886	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	135	399	0	ENST00000373198.4:c.3109A>G	p.Thr1037Ala	p.T1037A	ENST00000373198	NM_133170.3	1037	Aca/Gca																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230911	66230911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	115	59	0	ENST00000273854.3:c.2060G>T	p.Gly687Val	p.G687V	ENST00000273854	NM_004439.5	687	gGt/gTt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401876	139401876	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	630	723	1	ENST00000277541.6:c.3524A>T	p.Tyr1175Phe	p.Y1175F	ENST00000277541	NM_017617.3	1175	tAc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	56	353	0				ENST00000310581	NM_198253.2																																																																																
SMARCB1	6598	MSKCC	GRCh37	22	24158974	24158974	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	61	593	0	ENST00000263121.7:c.646G>C	p.Glu216Gln	p.E216Q	ENST00000263121	NM_003073.3	216	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0039740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	157	736	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
BCL6	604	MSKCC	GRCh37	3	187443402	187443402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	35	313	0	ENST00000232014.4:c.1724G>A	p.Arg575His	p.R575H	ENST00000232014	NM_001130845.1	575	cGt/cAt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63662153	63662153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	25	280	0	ENST00000279873.7:c.257G>C	p.Arg86Thr	p.R86T	ENST00000279873	NM_032199.2	86	aGa/aCa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453459	40453459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	121	667	0	ENST00000345506.4:c.1156G>C	p.Glu386Gln	p.E386Q	ENST00000345506	NM_003152.3	386	Gag/Cag																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	150	405	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79950724	79950725	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGCAGCGC			P-0039750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	19	116	1	ENST00000265081.6:c.181_189dup	p.Ala61_Pro63dup	p.A61_P63dup	ENST00000265081	NM_002439.4	61	gcc/gCCGCAGCGCcc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214457	5214457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	73	648	1	ENST00000357368.4:c.4529C>A	p.Thr1510Lys	p.T1510K	ENST00000357368	NM_002850.3	1510	aCg/aAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281307	15281307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	303	708	0	ENST00000263388.2:c.4949G>A	p.Gly1650Asp	p.G1650D	ENST00000263388	NM_000435.2	1650	gGc/gAc																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137524755	137524762	+	frameshift_variant	Frame_Shift_Del	DEL	GGAATCGC	GGAATCGC	TTAA			P-0039750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	141	412	1	ENST00000367739.4:c.607_614delinsTTAA	p.Ala203LeufsTer6	p.A203Lfs*6	ENST00000367739	NM_000416.2	203	GCGATTCCa/TTAAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70339210	70339254	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCCTGCCTCAGGATGAACTGACGGCCTTGAATGTAAAACAAGG	TTTCCTGCCTCAGGATGAACTGACGGCCTTGAATGTAAAACAAGG	-			P-0039750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	376	498	0	ENST00000374080.3:c.100-9_135del		p.X34_splice	ENST00000374080		34																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	90	332	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0039766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	135	634	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0039766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	44	286	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	67	239	1	ENST00000342988.3:c.1256G>A	p.Gly419Glu	p.G419E	ENST00000342988	NM_005359.5	419	gGg/gAg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223356	2223356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	143	593	0	ENST00000326181.6:c.968C>T	p.Ser323Leu	p.S323L	ENST00000326181	NM_032271.2	323	tCg/tTg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204849	128204849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	119	746	0	ENST00000341105.2:c.592G>A	p.Ala198Thr	p.A198T	ENST00000341105	NM_032638.4	198	Gcg/Acg																																																																														
APC	324	MSKCC	GRCh37	5	112174268	112174269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGTTTTGC			P-0039766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	55	322	0	ENST00000257430.4:c.2982_2989dup	p.Tyr997PhefsTer11	p.Y997Ffs*11	ENST00000257430	NM_000038.5	993	aag/aAGTTTTGCag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579445	7579475	+	frameshift_variant	Frame_Shift_Del	DEL	GTAGGAGCTGCTGGTGCAGGGGCCACGGGGG	GTAGGAGCTGCTGGTGCAGGGGCCACGGGGG	-			P-0039767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	215	781	0	ENST00000269305.4:c.212_242del	p.Pro71HisfsTer42	p.P71Hfs*42	ENST00000269305	NM_001126112.2	71	cCCCCCGTGGCCCCTGCACCAGCAGCTCCTACa/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0039771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	138	856	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509828	106509828	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	116	649	0	ENST00000359195.3:c.1822T>C	p.Tyr608His	p.Y608H	ENST00000359195	NM_002649.2	608	Tac/Cac																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250155	110250156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAG			P-0039771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	47	797	0	ENST00000374672.4:c.516_519dup	p.Gly174LeufsTer84	p.G174Lfs*84	ENST00000374672	NM_004235.4	173	-/CTAT																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0039780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	84	321	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	191	586	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	246	627	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0039780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	62	458	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	41	358	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572520	64572520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	79	628	0	ENST00000337652.1:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000337652	NM_130803.2	451	Cgt/Tgt																																																																														
ATR	545	MSKCC	GRCh37	3	142176560	142176560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151162347		P-0039780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	22	412	0	ENST00000350721.4:c.7541G>A	p.Arg2514His	p.R2514H	ENST00000350721	NM_001184.3	2514	cGc/cAc																																																																														
ALK	238	MSKCC	GRCh37	2	30143137	30143137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	63	510	1	ENST00000389048.3:c.389G>T	p.Gly130Val	p.G130V	ENST00000389048	NM_004304.4	130	gGc/gTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55960975	55960975	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	60	449	1	ENST00000263923.4:c.2965G>T	p.Glu989Ter	p.E989*	ENST00000263923	NM_002253.2	989	Gag/Tag																																																																														
TET2	54790	MSKCC	GRCh37	4	106157180	106157180	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	33	370	0	ENST00000380013.4:c.2081T>G	p.Leu694Arg	p.L694R	ENST00000380013	NM_001127208.2	694	cTt/cGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532640	187532640	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	41	389	0	ENST00000441802.2:c.9753A>C	p.Gln3251His	p.Q3251H	ENST00000441802	NM_005245.3	3251	caA/caC																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460475	149460476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	78	726	0	ENST00000286301.3:c.161dupC	p.Ser55IlefsTer9	p.S55Ifs*9	ENST00000286301	NM_005211.3	54	cca/ccCa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112433	115112433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	226	592	2	ENST00000257566.3:c.1307G>A	p.Arg436His	p.R436H	ENST00000257566	NM_016569.3	436	cGc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	85	591	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	133	958	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	70	330	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	98	591	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781324	3781326	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	180	1245	0	ENST00000262367.5:c.5039_5041delCCT	p.Ser1680del	p.S1680del	ENST00000262367	NM_004380.2	1680	tCCTtg/ttg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131402	17131402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	125	969	2	ENST00000285071.4:c.50G>A	p.Arg17His	p.R17H	ENST00000285071	NM_144997.5	17	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	157	821	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	136	1096	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
CDH1	999	MSKCC	GRCh37	16	68849467	68849467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	133	863	0	ENST00000261769.5:c.1370C>T	p.Thr457Met	p.T457M	ENST00000261769	NM_004360.3	457	aCg/aTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817813	3817813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142008620		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	111	752	0	ENST00000262367.5:c.3158C>T	p.Pro1053Leu	p.P1053L	ENST00000262367	NM_004380.2	1053	cCt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	102	512	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	58	469	1	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	77	514	4	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	48	534	1	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	159	609	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40384055	40384055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	93	628	0	ENST00000293328.3:c.91C>T	p.Arg31Trp	p.R31W	ENST00000293328	NM_012448.3	31	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	98	1059	2	ENST00000320574.5:c.6088delG	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	181	1272	4	ENST00000344626.4:c.810delC	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																																																														
MGA	23269	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	115	681	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919007	50919007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	118	816	3	ENST00000440232.2:c.2744C>T	p.Ala915Val	p.A915V	ENST00000440232	NM_002691.3	915	gCg/gTg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	107	833	2	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982386	25982386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	68	367	0	ENST00000435504.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000435504		302	Cga/Tga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156837949	156837949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150271893		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	178	1120	1	ENST00000524377.1:c.482G>A	p.Arg161His	p.R161H	ENST00000524377	NM_002529.3	161	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	120	1097	7	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	254	915	14	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30194859	30194859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	85	691	0	ENST00000331968.5:c.286G>A	p.Gly96Arg	p.G96R	ENST00000331968	NM_002742.2	96	Gga/Aga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48025856	48025857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	56	388	0	ENST00000234420.5:c.741dupA	p.Arg248ThrfsTer8	p.R248Tfs*8	ENST00000234420	NM_000179.2	245	ata/atAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133209267	133209267	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs5745021		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	99	1031	1	ENST00000320574.5:c.6119C>T	p.Ala2040Val	p.A2040V	ENST00000320574	NM_006231.2	2040	gCg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178943755	178943755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200671228		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	57	378	0	ENST00000263967.3:c.2422C>T	p.Arg808Trp	p.R808W	ENST00000263967	NM_006218.2	808	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716331	52716331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	118	882	2	ENST00000322088.6:c.775G>A	p.Val259Ile	p.V259I	ENST00000322088	NM_014225.5	259	Gtc/Atc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004232	29004232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	89	528	0	ENST00000282397.4:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000282397	NM_002019.4	354	cGg/cAg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090086	37090086	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs63751310		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	80	690	0	ENST00000231790.2:c.1975C>T	p.Arg659Ter	p.R659*	ENST00000231790	NM_000249.3	659	Cga/Tga																																																																														
STK40	83931	MSKCC	GRCh37	1	36809802	36809802	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	126	1061	0	ENST00000373129.3:c.803T>G	p.Leu268Arg	p.L268R	ENST00000373129	NM_032017.1	268	cTg/cGg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458044	120458045	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	103	828	0	ENST00000256646.2:c.7300dup	p.Ser2434PhefsTer2	p.S2434Ffs*2	ENST00000256646	NM_024408.3	2434	tct/tTct																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99440125	99440125	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	75	483	0	ENST00000268035.6:c.1093C>T	p.Arg365Ter	p.R365*	ENST00000268035	NM_000875.3	365	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992505	72992505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150708008		P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	123	1037	7	ENST00000268489.5:c.1540G>A	p.Ala514Thr	p.A514T	ENST00000268489	NM_006885.3	514	Gca/Aca																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346879	89346879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	74	409	0	ENST00000301030.4:c.6071C>T	p.Pro2024Leu	p.P2024L	ENST00000301030	NM_001256183.1	2024	cCg/cTg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979649	7979649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	87	623	1	ENST00000319144.4:c.1376G>A	p.Gly459Asp	p.G459D	ENST00000319144	NM_001139.2	459	gGc/gAc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368254	45368254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	79	597	0	ENST00000262160.6:c.1348G>A	p.Asp450Asn	p.D450N	ENST00000262160	NM_005901.5	450	Gac/Aac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591940	48591940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	84	524	0	ENST00000342988.3:c.1103C>A	p.Ser368Tyr	p.S368Y	ENST00000342988	NM_005359.5	368	tCc/tAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11101854	11101854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	135	1089	0	ENST00000344626.4:c.1274G>A	p.Arg425Gln	p.R425Q	ENST00000344626	NM_003072.3	425	cGg/cAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302926	15302926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	119	1267	0	ENST00000263388.2:c.524T>C	p.Leu175Pro	p.L175P	ENST00000263388	NM_000435.2	175	cTc/cCc																																																																														
AXL	558	MSKCC	GRCh37	19	41745116	41745116	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	125	995	1	ENST00000301178.4:c.1186del	p.Asp396ThrfsTer7	p.D396Tfs*7	ENST00000301178	NM_021913.4	394	caG/ca																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430687	181430688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	91	695	0	ENST00000325404.1:c.542dup	p.Gln182AlafsTer128	p.Q182Afs*128	ENST00000325404	NM_003106.3	180	tac/taCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518113	187518113	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	115	685	1	ENST00000441802.2:c.12581del	p.Leu4194TyrfsTer12	p.L4194Yfs*12	ENST00000441802	NM_005245.3	4194	tTa/ta																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836863	151836863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	117	727	0	ENST00000262189.6:c.14357A>G	p.Tyr4786Cys	p.Y4786C	ENST00000262189	NM_170606.2	4786	tAt/tGt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391962	139391962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	120	1006	3	ENST00000277541.6:c.6229G>A	p.Ala2077Thr	p.A2077T	ENST00000277541	NM_017617.3	2077	Gcc/Acc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1325419	1325419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	113	730	0	ENST00000381566.1:c.256C>A	p.Leu86Ile	p.L86I	ENST00000381566		86	Cta/Ata																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953228	81953228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	41	438	2	ENST00000359376.3:c.2194C>T	p.Arg732Cys	p.R732C	ENST00000359376	NM_002661.3	732	Cgc/Tgc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560934	9560934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	38	650	0	ENST00000353224.5:c.848G>A	p.Arg283Gln	p.R283Q	ENST00000353224	NM_177990.2	283	cGg/cAg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877423	28877423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	87	704	2	ENST00000282397.4:c.3898G>A	p.Val1300Ile	p.V1300I	ENST00000282397	NM_002019.4	1300	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579415	7579478	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAG	CAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAG	-			P-0039803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	211	1113	0	ENST00000269305.4:c.209_272del	p.Ala70GlyfsTer32	p.A70Gfs*32	ENST00000269305	NM_001126112.2	70	gCTCCCCCCGTGGCCCCTGCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGg/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	147	668	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	194	798	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0039806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	187	696	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508152	106508152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	31	318	0	ENST00000359195.3:c.146G>A	p.Arg49His	p.R49H	ENST00000359195	NM_002649.2	49	cGc/cAc																																																																														
BLM	641	MSKCC	GRCh37	15	91358475	91358475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150034914		P-0039806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	151	598	1	ENST00000355112.3:c.4220G>A	p.Arg1407Lys	p.R1407K	ENST00000355112	NM_000057.2	1407	aGa/aAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089691	27089701	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTGTCCCCC	ATGTGTCCCCC	-			P-0039806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	188	757	0	ENST00000324856.7:c.2648_2658del	p.Met883ThrfsTer49	p.M883Tfs*49	ENST00000324856	NM_006015.4	883	ATGTGTCCCCCa/a																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610549	81610549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	35	407	0	ENST00000298171.2:c.2147G>C	p.Ser716Thr	p.S716T	ENST00000298171	NM_000369.2	716	aGc/aCc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572100	95572100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	68	516	0	ENST00000343455.3:c.3008G>A	p.Arg1003Gln	p.R1003Q	ENST00000343455	NM_177438.2	1003	cGa/cAa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703656	47703656	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	119	554	0	ENST00000233146.2:c.2156T>C	p.Leu719Ser	p.L719S	ENST00000233146	NM_000251.2	719	tTg/tCg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38156968	38156968	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	119	447	0	ENST00000317025.8:c.2752G>C	p.Glu918Gln	p.E918Q	ENST00000317025	NM_023034.1	918	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578247	7578247	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0039811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	781	868	0	ENST00000269305.4:c.602T>A	p.Leu201Ter	p.L201*	ENST00000269305	NM_001126112.2	201	tTg/tAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18747471	18747471	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	74	442	0	ENST00000266497.5:c.3932A>C	p.Gln1311Pro	p.Q1311P	ENST00000266497		1311	cAa/cCa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636057	28636057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	173	824	1	ENST00000241453.7:c.315G>T	p.Trp105Cys	p.W105C	ENST00000241453	NM_004119.2	105	tgG/tgT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211904	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCCCC	ACCCCCC	-			P-0039811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1538	165	1212	0	ENST00000222270.7:c.1649_1655del	p.Asp550AlafsTer53	p.D550Afs*53	ENST00000222270	NM_014727.1	550	gACCCCCCc/gc																																																																														
KDR	3791	MSKCC	GRCh37	4	55956125	55956125	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	160	492	0	ENST00000263923.4:c.3190G>T	p.Asp1064Tyr	p.D1064Y	ENST00000263923	NM_002253.2	1064	Gat/Tat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259428	55259428	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	158	521	0	ENST00000275493.2:c.2486A>T	p.Glu829Val	p.E829V	ENST00000275493	NM_005228.3	829	gAg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	644	953	10	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612091	189612091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	233	879	3	ENST00000264731.3:c.1843C>T	p.His615Tyr	p.H615Y	ENST00000264731	NM_003722.4	615	Cat/Tat																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649561	48649561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	352	1209	8	ENST00000376670.3:c.49del	p.Gln17SerfsTer120	p.Q17Sfs*120	ENST00000376670	NM_002049.3	15	ctC/ct																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658283	18658283	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	196	593	1	ENST00000266497.5:c.3088G>T	p.Gly1030Ter	p.G1030*	ENST00000266497		1030	Gga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	48919295	48919295	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0039851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4	287	246	3	ENST00000267163.4:c.460A>T	p.Lys154Ter	p.K154*	ENST00000267163	NM_000321.2	154	Aag/Tag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123211845	123211845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	193	540	0	ENST00000218089.9:c.2712G>T	p.Met904Ile	p.M904I	ENST00000218089	NM_001042749.1	904	atG/atT																																																																														
WT1	7490	MSKCC	GRCh37	11	32456608	32456608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	52	96	0	ENST00000332351.3:c.284C>A	p.Pro95His	p.P95H	ENST00000332351	NM_024426.4	95	cCt/cAt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577347	64577347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	315	946	7	ENST00000337652.1:c.235C>T	p.Pro79Ser	p.P79S	ENST00000337652	NM_130803.2	79	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858556	9858556	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	215	646	3	ENST00000330684.3:c.2845T>C	p.Phe949Leu	p.F949L	ENST00000330684	NM_001134407.1	949	Ttt/Ctt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515613	31515613	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	205	605	4	ENST00000344624.3:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000344624		336	Gag/Tag																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971243	13971243	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	249	654	5	ENST00000405192.2:c.686A>T	p.Gln229Leu	p.Q229L	ENST00000405192	NM_001163147.1	229	cAg/cTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140449139	140449139	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	235	541	0	ENST00000288602.6:c.1940A>G	p.Tyr647Cys	p.Y647C	ENST00000288602	NM_004333.4	647	tAt/tGt																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1331520	1331520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	226	647	2	ENST00000381566.1:c.8G>T	p.Arg3Leu	p.R3L	ENST00000381566		3	cGg/cTg																																																																														
ATM	472	MSKCC	GRCh37	11	108202655	108202655	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	35	400	1	ENST00000278616.4:c.7679T>A	p.Ile2560Lys	p.I2560K	ENST00000278616	NM_000051.3	2560	aTa/aAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435355	18435355	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	155	394	0	ENST00000266497.5:c.340T>G	p.Leu114Val	p.L114V	ENST00000266497		114	Tta/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	335	894	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217326	11217336	+	protein_altering_variant	In_Frame_Del	DEL	TCATACCAGGT	TCATACCAGGT	GTAAC			P-0039871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	51	767	1	ENST00000361445.4:c.4342_4352delinsGTTAC	p.Thr1448_Glu1451delinsValThr	p.T1448_E1451delinsVT	ENST00000361445	NM_004958.3	1448	ACCTGGTATGAg/GTTACg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872216	45872216	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	230	823	0	ENST00000391945.4:c.218G>C	p.Cys73Ser	p.C73S	ENST00000391945	NM_000400.3	73	tGc/tCc																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384716	84384716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	166	358	1	ENST00000321945.7:c.727C>A	p.Leu243Ile	p.L243I	ENST00000321945	NM_139076.2	243	Cta/Ata																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860806	151860806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	159	443	0	ENST00000262189.6:c.9856C>T	p.Pro3286Ser	p.P3286S	ENST00000262189	NM_170606.2	3286	Ccc/Tcc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911404	39911405	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0039871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	180	651	0	ENST00000378444.4:c.5225_5226del	p.Glu1742ValfsTer6	p.E1742Vfs*6	ENST00000378444	NM_001123385.1	1742	gAG/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	202	118	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	134	209	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0039926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	30	178	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868682	37868682	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	122	174	0	ENST00000269571.5:c.1129C>G	p.Leu377Val	p.L377V	ENST00000269571		377	Ctg/Gtg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0039926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	341	184	1	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41548276	41548276	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	74	134	0	ENST00000263253.7:c.3064G>T	p.Glu1022Ter	p.E1022*	ENST00000263253	NM_001429.3	1022	Gaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342379	118342385	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	AAAACTA	AAAACTA	TAGTT			P-0039926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	87	108	1	ENST00000534358.1:c.505_511delinsTAGTT	p.Lys169Ter	p.K169*	ENST00000534358	NM_005933.3	169	AAAACTAgt/TAGTTgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285839	46285839	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	169	164	0	ENST00000334344.6:c.5107G>C	p.Asp1703His	p.D1703H	ENST00000334344	NM_152641.2	1703	Gat/Cat																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30264345	30264346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	51	69	0	ENST00000322652.5:c.82dup	p.Ser28PhefsTer55	p.S28Ffs*55	ENST00000322652	NM_015355.2	27	ggt/ggTt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265468	198265468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	99	188	0	ENST00000335508.6:c.2689C>T	p.Leu897Phe	p.L897F	ENST00000335508	NM_012433.2	897	Ctt/Ttt																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091210	29091210	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	34	41	0	ENST00000328354.6:c.1280T>G	p.Phe427Cys	p.F427C	ENST00000328354	NM_007194.3	427	tTc/tGc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934807	49934807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	186	255	0	ENST00000296474.3:c.2089G>A	p.Ala697Thr	p.A697T	ENST00000296474	NM_002447.2	697	Gca/Aca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157431693	157431693	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0039926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	105	214	0	ENST00000346085.5:c.2369G>C	p.Arg790Thr	p.R790T	ENST00000346085	NM_020732.3	790	aGa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577983	7578262	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTC	GGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTC	-			P-0039927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	200	97	0	ENST00000269305.4:c.587_672+194del		p.X196_splice	ENST00000269305	NM_001126112.2	196																																																																															
NF1	4763	MSKCC	GRCh37	17	29556250	29556250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	245	376	0	ENST00000358273.4:c.2617C>G	p.Arg873Gly	p.R873G	ENST00000358273	NM_001042492.2	873	Cgt/Ggt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721810	176721810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	59	452	0	ENST00000439151.2:c.7441G>A	p.Glu2481Lys	p.E2481K	ENST00000439151	NM_022455.4	2481	Gag/Aag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729978	41729978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	323	562	1	ENST00000242208.4:c.551G>A	p.Gly184Asp	p.G184D	ENST00000242208	NM_002192.2	184	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0039928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	59	822	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	113	715	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0039928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	90	452	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	133	433	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5211778	5211778	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	130	677	0	ENST00000357368.4:c.5057G>A	p.Arg1686Gln	p.R1686Q	ENST00000357368	NM_002850.3	1686	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	188	627	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	36	345	1	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851324	156851324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	94	741	0	ENST00000524377.1:c.2281C>T	p.Arg761Trp	p.R761W	ENST00000524377	NM_002529.3	761	Cgg/Tgg																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872969	136872969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	49	412	0	ENST00000241393.3:c.529G>A	p.Val177Ile	p.V177I	ENST00000241393	NM_003467.2	177	Gtc/Atc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40384105	40384105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	80	439	0	ENST00000293328.3:c.41C>G	p.Ala14Gly	p.A14G	ENST00000293328	NM_012448.3	14	gCc/gGc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158617538	158617538	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	63	529	0	ENST00000263640.3:c.1118A>C	p.Asn373Thr	p.N373T	ENST00000263640	NM_001105.4	373	aAt/aCt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067371	37067371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	29	486	0	ENST00000231790.2:c.1282G>A	p.Asp428Asn	p.D428N	ENST00000231790	NM_000249.3	428	Gat/Aat																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670595	134670595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	79	787	0	ENST00000398015.3:c.506C>A	p.Thr169Asn	p.T169N	ENST00000398015	NM_004441.4	169	aCt/aAt																																																																														
APC	324	MSKCC	GRCh37	5	112175343	112175344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	30	229	0	ENST00000257430.4:c.4053dup	p.Val1352CysfsTer2	p.V1352Cfs*2	ENST00000257430	NM_000038.5	1351	gct/gcTt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288734	33288734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	36	464	0	ENST00000374542.5:c.818G>A	p.Arg273Gln	p.R273Q	ENST00000374542	NM_001141970.1	273	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	55	526	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098965	178098965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	22	244	0	ENST00000397062.3:c.80A>G	p.Asp27Gly	p.D27G	ENST00000397062	NM_006164.4	27	gAt/gGt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279522	123279522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	43	694	1	ENST00000358487.5:c.910G>A	p.Asp304Asn	p.D304N	ENST00000358487	NM_000141.4	304	Gac/Aac																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986973	36986973	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	48	497	1	ENST00000354822.5:c.716del	p.Phe239SerfsTer8	p.F239Sfs*8	ENST00000354822	NM_001079668.2	239	tTc/tc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987010	36987010	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	37	537	0	ENST00000354822.5:c.679del	p.Met227Ter	p.M227*	ENST00000354822	NM_001079668.2	227	Atg/tg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0039974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	264	627	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135782131	135782131	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	22	455	0	ENST00000298552.3:c.1425del	p.Asp476IlefsTer56	p.D476Ifs*56	ENST00000298552	NM_001162426.1	475	aaA/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	399	454	0				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49440208	49440208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	250	566	0	ENST00000301067.7:c.4419-1G>A		p.X1473_splice	ENST00000301067	NM_003482.3	1473																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44918267	44918267	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	125	380	0	ENST00000377967.4:c.894del	p.Val300PhefsTer25	p.V300Ffs*25	ENST00000377967	NM_021140.2	298	Ggg/gg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191729	123191729	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0039974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	148	378	0	ENST00000218089.9:c.1318A>T	p.Arg440Ter	p.R440*	ENST00000218089	NM_001042749.1	440	Aga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	126	243	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574005	7574005	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	477	640	0	ENST00000269305.4:c.1022T>G	p.Phe341Cys	p.F341C	ENST00000269305	NM_001126112.2	341	tTc/tGc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231585	5231585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	14	246	0	ENST00000357368.4:c.1891C>T	p.Arg631Cys	p.R631C	ENST00000357368	NM_002850.3	631	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0039975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	292	546	0	ENST00000269305.4:c.994-2A>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15292541	15292541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1481	765	714	1	ENST00000263388.2:c.2638G>A	p.Ala880Thr	p.A880T	ENST00000263388	NM_000435.2	880	Gcc/Acc																																																																														
NF2	4771	MSKCC	GRCh37	22	30061041	30061041	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	335	295	0	ENST00000338641.4:c.873del	p.Val292LeufsTer4	p.V292Lfs*4	ENST00000338641	NM_000268.3	291	cgT/cg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31423042	31423042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	104	393	0	ENST00000344624.3:c.3271C>T	p.Pro1091Ser	p.P1091S	ENST00000344624		1091	Cca/Tca																																																																														
SDHC	6391	MSKCC	GRCh37	1	161326556	161326556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	44	185	0	ENST00000367975.2:c.331G>T	p.Ala111Ser	p.A111S	ENST00000367975	NM_003001.3	111	Gca/Tca																																																																														
DDR2	4921	MSKCC	GRCh37	1	162722914	162722914	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	328	624	0	ENST00000367921.3:c.112G>T	p.Gly38Ter	p.G38*	ENST00000367921	NM_006182.2	38	Gga/Tga																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716134	243716134	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	144	625	0	ENST00000263826.5:c.1060C>G	p.Leu354Val	p.L354V	ENST00000263826	NM_005465.4	354	Ctt/Gtt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115790	8115790	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	420	630	0	ENST00000346208.3:c.1136A>T	p.His379Leu	p.H379L	ENST00000346208		379	cAt/cTt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115803	8115803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	315	619	0	ENST00000346208.3:c.1149G>T	p.Glu383Asp	p.E383D	ENST00000346208		383	gaG/gaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448089	49448089	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	140	496	0	ENST00000301067.7:c.510+1G>A		p.X170_splice	ENST00000301067	NM_003482.3	170																																																																															
MDM2	4193	MSKCC	GRCh37	12	69233078	69233078	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	131	330	0	ENST00000462284.1:c.943A>G	p.Asn315Asp	p.N315D	ENST00000462284	NM_002392.5	315	Aat/Gat																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528225	103528225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	92	321	0	ENST00000355739.4:c.3533G>T	p.Arg1178Leu	p.R1178L	ENST00000355739	NM_000123.3	1178	cGt/cTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032128	10032128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	89	709	0	ENST00000330684.3:c.695C>G	p.Ser232Cys	p.S232C	ENST00000330684	NM_001134407.1	232	tCc/tGc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129400	30129400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	86	772	0	ENST00000263025.4:c.628T>C	p.Tyr210His	p.Y210H	ENST00000263025	NM_002746.2	210	Tac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	1014	837	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59861713	59861713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	228	496	0	ENST00000259008.2:c.1546G>A	p.Val516Ile	p.V516I	ENST00000259008	NM_032043.2	516	Gta/Ata																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129661	11129661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	514	747	1	ENST00000344626.4:c.2467G>A	p.Asp823Asn	p.D823N	ENST00000344626	NM_003072.3	823	Gac/Aac																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023962	31023962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	177	666	0	ENST00000375687.4:c.3447G>A	p.Met1149Ile	p.M1149I	ENST00000375687	NM_015338.5	1149	atG/atA																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44514823	44514823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	200	583	0	ENST00000291552.4:c.424G>T	p.Ala142Ser	p.A142S	ENST00000291552	NM_006758.2	142	Gcc/Tcc																																																																														
TP63	8626	MSKCC	GRCh37	3	189526100	189526100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	639	642	0	ENST00000264731.3:c.364C>A	p.Gln122Lys	p.Q122K	ENST00000264731	NM_003722.4	122	Cag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1254515	1254524	+	frameshift_variant	Frame_Shift_Del	DEL	GTGACACGGT	GTGACACGGT	-			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1862	104	981	0	ENST00000310581.5:c.3254_3263del	p.His1085ProfsTer16	p.H1085Pfs*16	ENST00000310581	NM_198253.2	1085	cACCGTGTCACc/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1279534	1279534	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1810	250	961	0	ENST00000310581.5:c.2002G>T	p.Glu668Ter	p.E668*	ENST00000310581	NM_198253.2	668	Gag/Tag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56184096	56184096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	33	406	0	ENST00000399503.3:c.4301G>T	p.Ser1434Ile	p.S1434I	ENST00000399503	NM_005921.1	1434	aGt/aTt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651959	36651959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	212	671	1	ENST00000244741.5:c.81C>A	p.Ser27Arg	p.S27R	ENST00000244741	NM_000389.4	27	agC/agA																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953012	2953012	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	215	798	0	ENST00000396946.4:c.2928del	p.Val977CysfsTer88	p.V977Cfs*88	ENST00000396946	NM_032415.4	976	ccC/cc																																																																														
MET	4233	MSKCC	GRCh37	7	116340029	116340029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	78	334	0	ENST00000397752.3:c.891G>T	p.Glu297Asp	p.E297D	ENST00000397752	NM_000245.2	297	gaG/gaT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412055	63412055	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	186	812	0	ENST00000330258.3:c.1112A>G	p.Glu371Gly	p.E371G	ENST00000330258	NM_152424.3	371	gAg/gGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	245	339	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	28	333	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	146	749	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
INHA	3623	MSKCC	GRCh37	2	220439494	220439494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	114	530	0	ENST00000243786.2:c.347G>A	p.Arg116Gln	p.R116Q	ENST00000243786	NM_002191.3	116	cGg/cAg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986820	36986821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	35	113	0	ENST00000354822.5:c.868dup	p.Val290GlyfsTer149	p.V290Gfs*149	ENST00000354822	NM_001079668.2	290	gtg/gGtg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652087	36652087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	130	700	0	ENST00000244741.5:c.209G>A	p.Gly70Asp	p.G70D	ENST00000244741	NM_000389.4	70	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	52	404	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	319	920	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	72	294	0	ENST00000304494.5:c.64dup	p.Arg22ProfsTer22	p.R22Pfs*22	ENST00000304494	NM_000077.4	22	cgg/cCgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	72	294	0	ENST00000304494.5:c.64dup	p.Arg22ProfsTer22	p.R22Pfs*22	ENST00000304494	NM_000077.4	22	cgg/cCgg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64128983	64128984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	73	793	0	ENST00000334205.4:c.618dup	p.Glu207ArgfsTer5	p.E207Rfs*5	ENST00000334205	NM_003942.2	205	gcc/gCcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	338	946	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	250	630	0	ENST00000269305.4:c.730G>C	p.Gly244Arg	p.G244R	ENST00000269305	NM_001126112.2	244	Ggc/Cgc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005852	69005852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	157	349	0	ENST00000288368.4:c.2263C>A	p.Gln755Lys	p.Q755K	ENST00000288368	NM_024870.2	755	Caa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	165	414	0	ENST00000288602.6:c.1405G>C	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Cga																																																																														
EZH2	2146	MSKCC	GRCh37	7	148529772	148529772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	134	398	0	ENST00000320356.2:c.317C>T	p.Ser106Leu	p.S106L	ENST00000320356	NM_004456.4	106	tCa/tTa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797510	45797510	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	335	844	0	ENST00000372115.3:c.967G>T	p.Gly323Ter	p.G323*	ENST00000372115	NM_001048171.1	323	Gga/Tga																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46725723	46725723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	201	521	0	ENST00000371975.4:c.359T>C	p.Leu120Pro	p.L120P	ENST00000371975	NM_003579.3	120	cTg/cCg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78414921	78414921	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	154	418	0	ENST00000370768.2:c.1845G>A	p.Trp615Ter	p.W615*	ENST00000370768	NM_003902.3	615	tgG/tgA																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666681	206666681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	239	761	0	ENST00000367120.3:c.2015C>G	p.Pro672Arg	p.P672R	ENST00000367120	NM_014002.3	672	cCc/cGc																																																																														
FH	2271	MSKCC	GRCh37	1	241667486	241667486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	124	281	0	ENST00000366560.3:c.964G>T	p.Val322Phe	p.V322F	ENST00000366560	NM_000143.3	322	Gtt/Ttt																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944761	31944761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	112	298	0	ENST00000340398.3:c.340G>T	p.Ala114Ser	p.A114S	ENST00000340398	NM_001013699.2	114	Gct/Tct																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975477	26975477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	133	333	0	ENST00000381527.3:c.1103G>T	p.Gly368Val	p.G368V	ENST00000381527	NM_001260.1	368	gGa/gTa																																																																														
RB1	5925	MSKCC	GRCh37	13	48955568	48955568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	43	275	0	ENST00000267163.4:c.1684G>T	p.Ala562Ser	p.A562S	ENST00000267163	NM_000321.2	562	Gca/Tca																																																																														
NUP93	9688	MSKCC	GRCh37	16	56871574	56871574	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	304	565	0	ENST00000308159.5:c.1954C>G	p.Gln652Glu	p.Q652E	ENST00000308159	NM_014669.4	652	Cag/Gag																																																																														
NF1	4763	MSKCC	GRCh37	17	29508800	29508800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	91	360	0	ENST00000358273.4:c.727G>T	p.Ala243Ser	p.A243S	ENST00000358273	NM_001042492.2	243	Gct/Tct																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211193	2211193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	378	868	2	ENST00000398665.3:c.1447G>T	p.Ala483Ser	p.A483S	ENST00000398665	NM_032482.2	483	Gcg/Tcg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170928	99170928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	260	718	0	ENST00000074304.5:c.1557G>T	p.Gln519His	p.Q519H	ENST00000074304	NM_001134224.1	519	caG/caT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468393	89468394	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	80	218	1	ENST00000336596.2:c.1927_1928delinsAA	p.Pro643Asn	p.P643N	ENST00000336596	NM_005233.5	643	CCt/AAt																																																																														
ATR	545	MSKCC	GRCh37	3	142275285	142275285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	199	558	0	ENST00000350721.4:c.2018G>T	p.Ser673Ile	p.S673I	ENST00000350721	NM_001184.3	673	aGt/aTt																																																																														
TP63	8626	MSKCC	GRCh37	3	189582149	189582149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	351	511	0	ENST00000264731.3:c.708C>G	p.His236Gln	p.H236Q	ENST00000264731	NM_003722.4	236	caC/caG																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129858	55129858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	163	470	0	ENST00000257290.5:c.392T>C	p.Leu131Pro	p.L131P	ENST00000257290	NM_006206.4	131	cTa/cCa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55154981	55154981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	135	529	0	ENST00000257290.5:c.2690C>A	p.Pro897His	p.P897H	ENST00000257290	NM_006206.4	897	cCc/cAc																																																																														
KDR	3791	MSKCC	GRCh37	4	55970810	55970810	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	164	418	0	ENST00000263923.4:c.1987G>T	p.Glu663Ter	p.E663*	ENST00000263923	NM_002253.2	663	Gag/Tag																																																																														
KDR	3791	MSKCC	GRCh37	4	55979595	55979595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	182	487	0	ENST00000263923.4:c.852G>C	p.Glu284Asp	p.E284D	ENST00000263923	NM_002253.2	284	gaG/gaC																																																																														
SDHA	6389	MSKCC	GRCh37	5	236663	236663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	858	597	0	ENST00000264932.6:c.1381G>A	p.Val461Ile	p.V461I	ENST00000264932	NM_004168.2	461	Gtt/Att																																																																														
ESR1	2099	MSKCC	GRCh37	6	152382159	152382159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	122	343	0	ENST00000206249.3:c.1269G>T	p.Glu423Asp	p.E423D	ENST00000206249	NM_000125.3	423	gaG/gaT																																																																														
AGO2	27161	MSKCC	GRCh37	8	141559315	141559315	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	120	805	1	ENST00000220592.5:c.1486C>T	p.Gln496Ter	p.Q496*	ENST00000220592	NM_012154.3	496	Cag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518050	8518050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	139	424	0	ENST00000356435.5:c.1341G>T	p.Gln447His	p.Q447H	ENST00000356435		447	caG/caT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	95	283	3	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	64	326	0				ENST00000310581	NM_198253.2																																																																																
SMAD3	4088	MSKCC	GRCh37	15	67477080	67477080	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	79	411	0	ENST00000327367.4:c.887T>G	p.Leu296Arg	p.L296R	ENST00000327367	NM_005902.3	296	cTc/cGc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482860	67482860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	69	419	1	ENST00000327367.4:c.1264T>C	p.Ser422Pro	p.S422P	ENST00000327367	NM_005902.3	422	Tcc/Ccc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902657	50902657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141319800		P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	144	728	0	ENST00000440232.2:c.232C>T	p.Arg78Cys	p.R78C	ENST00000440232	NM_002691.3	78	Cgc/Tgc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41265608	41266240	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTA	GCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTA	-			P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	87	246	0	ENST00000349496.5:c.13+39_240del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
RAD50	10111	MSKCC	GRCh37	5	131939021	131939021	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	36	262	0	ENST00000265335.6:c.2237A>G	p.Glu746Gly	p.E746G	ENST00000265335		746	gAa/gGa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625218	69625218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			931	95	1178	5	ENST00000334134.2:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000334134	NM_005247.2	192	cGg/cAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5211661	5211661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1375	160	872	1	ENST00000357368.4:c.5174A>G	p.Gln1725Arg	p.Q1725R	ENST00000357368	NM_002850.3	1725	cAa/cGa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986994	36986994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	212	648	0	ENST00000354822.5:c.695C>T	p.Pro232Leu	p.P232L	ENST00000354822	NM_001079668.2	232	cCc/cTc																																																																														
LYN	4067	MSKCC	GRCh37	8	56911060	56911060	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			766	165	568	0	ENST00000519728.1:c.1204+2T>C		p.X402_splice	ENST00000519728	NM_002350.3	402																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	64	727	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	159	767	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	96	467	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112170682	112170682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	71	487	0	ENST00000257430.4:c.1778G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tGg/tAg																																																																														
SESN1	27244	MSKCC	GRCh37	6	109311924	109311924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	75	660	0	ENST00000436639.2:c.1348G>A	p.Ala450Thr	p.A450T	ENST00000436639	NM_014454.2	450	Gca/Aca																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508616	106508616	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	61	587	0	ENST00000359195.3:c.610T>G	p.Ser204Ala	p.S204A	ENST00000359195	NM_002649.2	204	Tcc/Gcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788651	3788651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	160	379	0	ENST00000262367.5:c.4303G>A	p.Asp1435Asn	p.D1435N	ENST00000262367	NM_004380.2	1435	Gat/Aat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435061	18435061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	40	270	0	ENST00000266497.5:c.46G>A	p.Glu16Lys	p.E16K	ENST00000266497		16	Gaa/Aaa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489571	56489571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	183	475	0	ENST00000267101.3:c.2036G>A	p.Arg679Gln	p.R679Q	ENST00000267101	NM_001982.3	679	cGa/cAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946319	2946319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	402	775	0	ENST00000396946.4:c.3418G>A	p.Gly1140Ser	p.G1140S	ENST00000396946	NM_032415.4	1140	Ggc/Agc																																																																														
MCL1	4170	MSKCC	GRCh37	1	150550932	150550932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	119	327	0	ENST00000369026.2:c.724G>A	p.Asp242Asn	p.D242N	ENST00000369026	NM_021960.4	242	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	283	156	0				ENST00000310581	NM_198253.2																																																																																
FAT1	2195	MSKCC	GRCh37	4	187627969	187627969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	207	559	0	ENST00000441802.2:c.3013G>C	p.Asp1005His	p.D1005H	ENST00000441802	NM_005245.3	1005	Gac/Cac																																																																														
CCND2	894	MSKCC	GRCh37	12	4398032	4398032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	95	451	0	ENST00000261254.3:c.596C>T	p.Pro199Leu	p.P199L	ENST00000261254	NM_001759.3	199	cCg/cTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118369196	118369196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	59	303	0	ENST00000534358.1:c.5914G>T	p.Asp1972Tyr	p.D1972Y	ENST00000534358	NM_005933.3	1972	Gat/Tat																																																																														
CBL	867	MSKCC	GRCh37	11	119149361	119149361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	72	330	0	ENST00000264033.4:c.1369G>A	p.Asp457Asn	p.D457N	ENST00000264033	NM_005188.3	457	Gat/Aat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913160	32913160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	110	456	0	ENST00000380152.3:c.4668C>G	p.Ile1556Met	p.I1556M	ENST00000380152		1556	atC/atG																																																																														
BRCA2	675	MSKCC	GRCh37	13	32969063	32969063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	51	218	0	ENST00000380152.3:c.9494C>A	p.Thr3165Asn	p.T3165N	ENST00000380152		3165	aCt/aAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972384	32972384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	104	452	1	ENST00000380152.3:c.9734C>T	p.Ser3245Leu	p.S3245L	ENST00000380152		3245	tCa/tTa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519159	103519159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	155	364	0	ENST00000355739.4:c.2497G>A	p.Glu833Lys	p.E833K	ENST00000355739	NM_000123.3	833	Gaa/Aaa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434817	110434817	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	335	520	1	ENST00000375856.3:c.3584G>C	p.Gly1195Ala	p.G1195A	ENST00000375856	NM_003749.2	1195	gGa/gCa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961873	41961873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	124	339	0	ENST00000219905.7:c.781G>A	p.Asp261Asn	p.D261N	ENST00000219905	NM_001164273.1	261	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829646	72829646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	229	589	0	ENST00000268489.5:c.6935G>A	p.Arg2312Gln	p.R2312Q	ENST00000268489	NM_006885.3	2312	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221297	36221297	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	341	798	0	ENST00000222270.7:c.5131G>C	p.Glu1711Gln	p.E1711Q	ENST00000222270	NM_014727.1	1711	Gag/Cag																																																																														
REL	5966	MSKCC	GRCh37	2	61149246	61149246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	93	290	0	ENST00000295025.8:c.1436C>T	p.Ser479Leu	p.S479L	ENST00000295025	NM_002908.2	479	tCa/tTa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52663008	52663008	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	90	245	0	ENST00000394830.3:c.1345G>C	p.Glu449Gln	p.E449Q	ENST00000394830	NM_018313.4	449	Gag/Cag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89156944	89156944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	216	552	0	ENST00000336596.2:c.46C>T	p.Leu16Phe	p.L16F	ENST00000336596	NM_005233.5	16	Ctc/Ttc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250889	153250895	+	frameshift_variant	Frame_Shift_Del	DEL	CACAAAA	CACAAAA	-			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	70	310	0	ENST00000281708.4:c.1165_1171del	p.Phe389ValfsTer4	p.F389Vfs*4	ENST00000281708	NM_033632.3	389	TTTTGTGgt/gt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628134	187628134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	240	619	0	ENST00000441802.2:c.2848G>C	p.Glu950Gln	p.E950Q	ENST00000441802	NM_005245.3	950	Gaa/Caa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628287	187628287	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	260	590	0	ENST00000441802.2:c.2695G>T	p.Asp899Tyr	p.D899Y	ENST00000441802	NM_005245.3	899	Gac/Tac																																																																														
TAP1	6890	MSKCC	GRCh37	6	32814921	32814921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	594	634	0	ENST00000354258.4:c.2144G>C	p.Arg715Pro	p.R715P	ENST00000354258	NM_000593.5	715	cGa/cCa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287406	33287406	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	394	475	0	ENST00000374542.5:c.1691C>G	p.Ser564Cys	p.S564C	ENST00000374542	NM_001141970.1	564	tCt/tGt																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137525543	137525543	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	247	468	0	ENST00000367739.4:c.472G>T	p.Glu158Ter	p.E158*	ENST00000367739	NM_000416.2	158	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864287	151864287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	132	485	0	ENST00000262189.6:c.9694G>C	p.Glu3232Gln	p.E3232Q	ENST00000262189	NM_170606.2	3232	Gaa/Caa																																																																														
JUN	3725	MSKCC	GRCh37	1	59248514	59248514	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	303	527	1	ENST00000371222.2:c.229G>T	p.Glu77Ter	p.E77*	ENST00000371222	NM_002228.3	77	Gag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375690	118375690	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	219	469	0	ENST00000534358.1:c.9083A>T	p.Asn3028Ile	p.N3028I	ENST00000534358	NM_005933.3	3028	aAc/aTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944575	32944575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	301	481	1	ENST00000380152.3:c.8368A>T	p.Thr2790Ser	p.T2790S	ENST00000380152		2790	Acc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032280	10032280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	312	507	1	ENST00000330684.3:c.543G>T	p.Arg181Ser	p.R181S	ENST00000330684	NM_001134407.1	181	agG/agT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	296	595	0	ENST00000269305.4:c.586C>G	p.Arg196Gly	p.R196G	ENST00000269305	NM_001126112.2	196	Cga/Gga																																																																														
NF1	4763	MSKCC	GRCh37	17	29533379	29533379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	130	188	0	ENST00000358273.4:c.1382G>A	p.Arg461Gln	p.R461Q	ENST00000358273	NM_001042492.2	461	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29576058	29576058	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	305	442	0	ENST00000358273.4:c.4031A>T	p.Glu1344Val	p.E1344V	ENST00000358273	NM_001042492.2	1344	gAa/gTa																																																																														
CARM1	10498	MSKCC	GRCh37	19	11031789	11031789	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	275	636	2	ENST00000327064.4:c.1601A>T	p.Asn534Ile	p.N534I	ENST00000327064	NM_199141.1	534	aAc/aTc																																																																														
CALR	811	MSKCC	GRCh37	19	13051666	13051666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	254	510	0	ENST00000316448.5:c.925G>A	p.Asp309Asn	p.D309N	ENST00000316448	NM_004343.3	309	Gat/Aat																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943499	17943499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	289	569	1	ENST00000458235.1:c.2509G>C	p.Glu837Gln	p.E837Q	ENST00000458235	NM_000215.3	837	Gag/Cag																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038071	128038071	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	96	376	0	ENST00000285398.2:c.1479G>A	p.Trp493Ter	p.W493*	ENST00000285398	NM_000122.1	493	tgG/tgA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499424	89499424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	226	379	0	ENST00000336596.2:c.2594G>C	p.Arg865Thr	p.R865T	ENST00000336596	NM_005233.5	865	aGg/aCg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138431121	138431121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	150	380	0	ENST00000289153.2:c.1328C>G	p.Thr443Arg	p.T443R	ENST00000289153	NM_006219.2	443	aCg/aGg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549435	187549435	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	335	529	0	ENST00000441802.2:c.4683G>T	p.Trp1561Cys	p.W1561C	ENST00000441802	NM_005245.3	1561	tgG/tgT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670549	30670549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	239	471	0	ENST00000376406.3:c.5971C>T	p.Arg1991Trp	p.R1991W	ENST00000376406	NM_014641.2	1991	Cgg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170117	32170117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	287	737	0	ENST00000375023.3:c.3491G>T	p.Ser1164Ile	p.S1164I	ENST00000375023	NM_004557.3	1164	aGc/aTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409910	63409910	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	116	422	0	ENST00000330258.3:c.3257A>T	p.Gln1086Leu	p.Q1086L	ENST00000330258	NM_152424.3	1086	cAg/cTg																																																																														
AR	367	MSKCC	GRCh37	X	66863151	66863151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	134	542	0	ENST00000374690.3:c.1670A>G	p.Gln557Arg	p.Q557R	ENST00000374690	NM_000044.3	557	cAg/cGg																																																																														
MED12	9968	MSKCC	GRCh37	X	70344013	70344013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	165	578	0	ENST00000374080.3:c.1749C>A	p.Asp583Glu	p.D583E	ENST00000374080		583	gaC/gaA																																																																														
MED12	9968	MSKCC	GRCh37	X	70348541	70348541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	166	489	0	ENST00000374080.3:c.3448G>T	p.Ala1150Ser	p.A1150S	ENST00000374080		1150	Gct/Tct																																																																														
ATRX	546	MSKCC	GRCh37	X	76949370	76949370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	81	352	0	ENST00000373344.5:c.427G>T	p.Gly143Trp	p.G143W	ENST00000373344	NM_000489.3	143	Ggg/Tgg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123229223	123229223	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	92	267	0	ENST00000218089.9:c.3707C>A	p.Pro1236Gln	p.P1236Q	ENST00000218089	NM_001042749.1	1236	cCa/cAa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0039657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	53	283	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	36	654	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	33	587	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060691	38060692	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ACCT			P-0039689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	82	745	0	ENST00000250448.2:c.1297_1298insAGGT	p.Leu433Ter	p.L433*	ENST00000250448	NM_004496.3	433	ttg/tAGGTtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	628	1192	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	65	219	0	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																																																														
ATM	472	MSKCC	GRCh37	11	108178642	108178642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	70	282	0	ENST00000278616.4:c.5693G>A	p.Arg1898Gln	p.R1898Q	ENST00000278616	NM_000051.3	1898	cGa/cAa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289871	15289871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	492	1239	1	ENST00000263388.2:c.3683G>A	p.Gly1228Glu	p.G1228E	ENST00000263388	NM_000435.2	1228	gGa/gAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638917	176638917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	253	782	0	ENST00000439151.2:c.3517C>T	p.Arg1173Cys	p.R1173C	ENST00000439151	NM_022455.4	1173	Cgc/Tgc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163313565	163313565	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	79	371	0	ENST00000271452.3:c.712G>C	p.Glu238Gln	p.E238Q	ENST00000271452	NM_145697.2	238	Gag/Cag																																																																														
PARP1	142	MSKCC	GRCh37	1	226553743	226553743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	118	396	0	ENST00000366794.5:c.2417G>C	p.Arg806Thr	p.R806T	ENST00000366794	NM_001618.3	806	aGa/aCa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115877	8115877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	273	716	0	ENST00000346208.3:c.1223C>A	p.Pro408His	p.P408H	ENST00000346208		408	cCc/cAc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851418	63851418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	217	666	0	ENST00000279873.7:c.2196G>C	p.Leu732Phe	p.L732F	ENST00000279873	NM_032199.2	732	ttG/ttC																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144069	11144069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	331	1060	0	ENST00000344626.4:c.3650C>T	p.Ala1217Val	p.A1217V	ENST00000344626	NM_003072.3	1217	gCa/gTa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960024	134960024	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	103	707	0	ENST00000398015.3:c.2381A>G	p.Glu794Gly	p.E794G	ENST00000398015	NM_004441.4	794	gAg/gGg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664918	138664918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	109	243	0	ENST00000330315.3:c.647C>G	p.Ala216Gly	p.A216G	ENST00000330315	NM_023067.3	216	gCc/gGc																																																																														
APC	324	MSKCC	GRCh37	5	112175401	112175406	+	inframe_deletion	In_Frame_Del	DEL	AAGTCC	AAGTCC	-			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	93	413	0	ENST00000257430.4:c.4111_4116del	p.Ser1371_Pro1372del	p.S1371_P1372del	ENST00000257430	NM_000038.5	1370	aaAAGTCCa/aaa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910331	29910331	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	620	848	0	ENST00000376809.5:c.1A>G	p.Met1?	p.M1?	ENST00000376809	NM_002116.7	1	Atg/Gtg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671858	30671858	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	483	1077	1	ENST00000376406.3:c.5102A>C	p.Gln1701Pro	p.Q1701P	ENST00000376406	NM_014641.2	1701	cAa/cCa																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683622	162683622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	254	696	0	ENST00000366898.1:c.347C>T	p.Ser116Phe	p.S116F	ENST00000366898	NM_004562.2	116	tCt/tTt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729472	41729472	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	553	814	1	ENST00000242208.4:c.1057G>C	p.Glu353Gln	p.E353Q	ENST00000242208	NM_002192.2	353	Gag/Cag																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815652	139815652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	235	730	0	ENST00000247668.2:c.1123G>T	p.Ala375Ser	p.A375S	ENST00000247668	NM_021138.3	375	Gcc/Tcc																																																																														
CDH1	999	MSKCC	GRCh37	16	68847282	68847282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	138	742	0	ENST00000261769.5:c.1204G>A	p.Asp402Asn	p.D402N	ENST00000261769	NM_004360.3	402	Gat/Aat																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850816	63850816	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	122	554	0	ENST00000279873.7:c.1594G>T	p.Glu532Ter	p.E532*	ENST00000279873	NM_032199.2	532	Gag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108141801	108141801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	131	394	0	ENST00000278616.4:c.2849T>C	p.Leu950Pro	p.L950P	ENST00000278616	NM_000051.3	950	cTt/cCt																																																																														
RB1	5925	MSKCC	GRCh37	13	48937035	48937035	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	239	370	0	ENST00000267163.4:c.806del	p.Asn269MetfsTer17	p.N269Mfs*17	ENST00000267163	NM_000321.2	268	gAa/ga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	55	264	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696708	47696708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	133	436	0	ENST00000347630.2:c.240C>G	p.Ser80Arg	p.S80R	ENST00000347630	NM_001007230.1	80	agC/agG																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	88	321	0	ENST00000349496.5:c.97T>G	p.Ser33Ala	p.S33A	ENST00000349496	NM_001904.3	33	Tct/Gct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105967	27105967	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	106	544	0	ENST00000324856.7:c.5578G>T	p.Glu1860Ter	p.E1860*	ENST00000324856	NM_006015.4	1860	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426172	49426172	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	82	706	0	ENST00000301067.7:c.12316A>G	p.Ser4106Gly	p.S4106G	ENST00000301067	NM_003482.3	4106	Agc/Ggc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729743	162729743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	94	582	0	ENST00000367921.3:c.829C>G	p.Arg277Gly	p.R277G	ENST00000367921	NM_006182.2	277	Cgc/Ggc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77054889	77054889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	35	405	0	ENST00000356341.3:c.973C>G	p.Pro325Ala	p.P325A	ENST00000356341	NM_002576.4	325	Cca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	129	395	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230671	46230671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	101	397	0	ENST00000334344.6:c.920C>T	p.Ala307Val	p.A307V	ENST00000334344	NM_152641.2	307	gCa/gTa																																																																														
RB1	5925	MSKCC	GRCh37	13	49039494	49039494	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	61	441	0	ENST00000267163.4:c.2480del	p.Pro827GlnfsTer6	p.P827Qfs*6	ENST00000267163	NM_000321.2	827	Cca/ca																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40682108	40682108	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	93	547	0	ENST00000249776.8:c.663G>T	p.Leu221Phe	p.L221F	ENST00000249776	NM_033286.3	221	ttG/ttT																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40682117	40682117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	93	526	0	ENST00000249776.8:c.672G>T	p.Lys224Asn	p.K224N	ENST00000249776	NM_033286.3	224	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	116	721	1	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																														
INSR	3643	MSKCC	GRCh37	19	7170723	7170723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	39	784	1	ENST00000302850.5:c.1308G>T	p.Arg436Ser	p.R436S	ENST00000302850	NM_000208.2	436	agG/agT																																																																														
APC	324	MSKCC	GRCh37	5	112176538	112176538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	32	301	0	ENST00000257430.4:c.5247G>T	p.Gln1749His	p.Q1749H	ENST00000257430	NM_000038.5	1749	caG/caT																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978575	70978575	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	127	563	0	ENST00000276594.2:c.1078C>G	p.Gln360Glu	p.Q360E	ENST00000276594	NM_024504.3	360	Caa/Gaa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742547	145742547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	159	697	0	ENST00000428558.2:c.241C>T	p.His81Tyr	p.H81Y	ENST00000428558	NM_004260.3	81	Cat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485860	8485860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	36	337	0	ENST00000356435.5:c.2957C>A	p.Pro986Gln	p.P986Q	ENST00000356435		986	cCa/cAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98248118	98248118	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	72	488	0	ENST00000331920.6:c.433C>T	p.Gln145Ter	p.Q145*	ENST00000331920	NM_000264.3	145	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	246	349	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	455	965	1	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	301	420	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	296	387	0	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	92	406	2	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212639	36212639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1318	152	998	0	ENST00000222270.7:c.2390A>G	p.Lys797Arg	p.K797R	ENST00000222270	NM_014727.1	797	aAg/aGg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702248	47702248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	207	518	1	ENST00000233146.2:c.1844C>T	p.Ala615Val	p.A615V	ENST00000233146	NM_000251.2	615	gCa/gTa																																																																														
BARD1	580	MSKCC	GRCh37	2	215593724	215593724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	49	231	0	ENST00000260947.4:c.2010G>T	p.Lys670Asn	p.K670N	ENST00000260947	NM_000465.2	670	aaG/aaT																																																																														
TP63	8626	MSKCC	GRCh37	3	189582100	189582100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	278	416	0	ENST00000264731.3:c.659C>G	p.Pro220Arg	p.P220R	ENST00000264731	NM_003722.4	220	cCt/cGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44894231	44894232	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0039835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	176	199	0	ENST00000377967.4:c.619+2dup		p.X207_splice	ENST00000377967	NM_021140.2	207																																																																															
WT1	7490	MSKCC	GRCh37	11	32439122	32439122	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0019019-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	324	630	0	ENST00000332351.3:c.950+1G>A		p.X317_splice	ENST00000332351	NM_024426.4	317																																																																															
ATRX	546	MSKCC	GRCh37	X	76891405	76891405	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0019019-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			144	232	427	0	ENST00000373344.5:c.4699+1G>C		p.X1567_splice	ENST00000373344	NM_000489.3	1567																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023958-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			58	392	177	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023958-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			31	99	73	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100645	8100645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023958-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	155	163	0	ENST00000346208.3:c.619G>A	p.Ala207Thr	p.A207T	ENST00000346208		207	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	84	676	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	531	546	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	154	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175344	112175344	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	237	277	0	ENST00000257430.4:c.4053del	p.Val1352LeufsTer63	p.V1352Lfs*63	ENST00000257430	NM_000038.5	1351	gcT/gc																																																																														
APC	324	MSKCC	GRCh37	5	112175985	112175985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	110	259	0	ENST00000257430.4:c.4694del	p.Asp1565ValfsTer11	p.D1565Vfs*11	ENST00000257430	NM_000038.5	1565	gAt/gt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	67	442	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	37	446	0				ENST00000310581	NM_198253.2																																																																																
JAK3	3718	MSKCC	GRCh37	19	17937619	17937619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	62	941	0	ENST00000458235.1:c.3308G>T	p.Arg1103Leu	p.R1103L	ENST00000458235	NM_000215.3	1103	cGg/cTg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163832	152163832	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	52	571	0	ENST00000206249.3:c.553T>A	p.Cys185Ser	p.C185S	ENST00000206249	NM_000125.3	185	Tgt/Agt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	97	669	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	97	669	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873020	136873020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147198552		P-0039700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	81	512	0	ENST00000241393.3:c.478G>A	p.Val160Ile	p.V160I	ENST00000241393	NM_003467.2	160	Gtc/Atc																																																																														
TERT	7015	MSKCC	GRCh37	5	1280380	1280380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112614087		P-0039700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	127	973	1	ENST00000310581.5:c.1843G>A	p.Ala615Thr	p.A615T	ENST00000310581	NM_198253.2	615	Gcc/Acc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720806	89720806	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	31	423	0	ENST00000371953.3:c.959delT	p.Leu320Ter	p.L320*	ENST00000371953	NM_000314.4	319	acT/ac																																																																														
AXIN1	8312	MSKCC	GRCh37	16	338208	338208	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	86	842	0	ENST00000262320.3:c.2503del	p.Val835TrpfsTer103	p.V835Wfs*103	ENST00000262320	NM_003502.3	835	Gtg/tg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137733	64137733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	103	1093	0	ENST00000334205.4:c.1834G>C	p.Ala612Pro	p.A612P	ENST00000334205	NM_003942.2	612	Gcc/Ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579583	7579583	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	103	748	0	ENST00000269305.4:c.104del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	35	tTg/tg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131893077	131893077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	86	426	0	ENST00000265335.6:c.61G>A	p.Asp21Asn	p.D21N	ENST00000265335		21	Gat/Aat																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127916221	127916226	+	inframe_deletion	In_Frame_Del	DEL	GTATCT	GTATCT	-			P-0039700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	60	587	0	ENST00000373547.4:c.418_423del	p.Arg140_Tyr141del	p.R140_Y141del	ENST00000373547	NM_002721.4	140	AGATAC/-																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039339	47039339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	91	958	0	ENST00000329236.7:c.731C>A	p.Ala244Glu	p.A244E	ENST00000329236	NM_001204466.1	244	gCa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			110	540	633	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671286	30671286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	425	373	0	ENST00000376406.3:c.5591G>C	p.Arg1864Thr	p.R1864T	ENST00000376406	NM_014641.2	1864	aGa/aCa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450397	50450397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			861	126	379	0	ENST00000331340.3:c.581C>T	p.Thr194Met	p.T194M	ENST00000331340	NM_006060.4	194	aCg/aTg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246670422	246670422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	714	626	0	ENST00000388985.4:c.98C>G	p.Ser33Trp	p.S33W	ENST00000388985		33	tCg/tGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433614	49433614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			866	671	925	1	ENST00000301067.7:c.7939G>A	p.Asp2647Asn	p.D2647N	ENST00000301067	NM_003482.3	2647	Gac/Aac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434849	49434849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			829	633	731	0	ENST00000301067.7:c.6704G>C	p.Arg2235Thr	p.R2235T	ENST00000301067	NM_003482.3	2235	aGa/aCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435312	49435312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	505	651	0	ENST00000301067.7:c.6241G>A	p.Glu2081Lys	p.E2081K	ENST00000301067	NM_003482.3	2081	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436602	49436602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			739	564	642	0	ENST00000301067.7:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000301067	NM_003482.3	1902	Gaa/Aaa																																																																														
RAD51	5888	MSKCC	GRCh37	15	41011054	41011054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			666	259	591	0	ENST00000267868.3:c.487G>A	p.Glu163Lys	p.E163K	ENST00000267868	NM_002875.4	163	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68855969	68855969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			89	379	493	2	ENST00000261769.5:c.1777C>A	p.Pro593Thr	p.P593T	ENST00000261769	NM_004360.3	593	Ccc/Acc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004871	16004871	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	497	526	0	ENST00000268712.3:c.2383C>T	p.Gln795Ter	p.Q795*	ENST00000268712	NM_006311.3	795	Cag/Tag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18277027	18277027	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	389	483	0	ENST00000222254.8:c.1474G>C	p.Glu492Gln	p.E492Q	ENST00000222254	NM_005027.3	492	Gaa/Caa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245175	46245175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	181	450	0	ENST00000334344.6:c.3269C>A	p.Ala1090Glu	p.A1090E	ENST00000334344	NM_152641.2	1090	gCa/gAa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13940457	13940457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019783-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			651	132	216	0	ENST00000405192.2:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000405192	NM_001163147.1	350	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	30	437	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0039263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	24	403	0	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																																																														
STK11	6794	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0039263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	70	619	0	ENST00000326873.7:c.921-1G>C		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602818	10602818	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	107	986	0	ENST00000171111.5:c.760A>T	p.Lys254Ter	p.K254*	ENST00000171111	NM_203500.1	254	Aag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602281	10602281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	95	860	0	ENST00000171111.5:c.1297G>T	p.Gly433Cys	p.G433C	ENST00000171111	NM_203500.1	433	Ggc/Tgc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786880	135786880	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	32	492	0	ENST00000298552.3:c.989T>G	p.Leu330Arg	p.L330R	ENST00000298552	NM_001162426.1	330	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	106	574	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023090	27023090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	22	99	0	ENST00000324856.7:c.196C>A	p.Pro66Thr	p.P66T	ENST00000324856	NM_006015.4	66	Ccg/Acg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722065	176722065	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	52	445	0	ENST00000439151.2:c.7696A>G	p.Thr2566Ala	p.T2566A	ENST00000439151	NM_022455.4	2566	Acc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	332	478	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	147	402	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0039551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	142	337	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
ATM	472	MSKCC	GRCh37	11	108115595	108115595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	131	363	0	ENST00000278616.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000278616	NM_000051.3	248	cGa/cAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11319439	11319440	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	54	531	0	ENST00000361445.4:c.27dup	p.Thr10HisfsTer8	p.T10Hfs*8	ENST00000361445	NM_004958.3	9	-/C																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089494	27089494	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	64	573	0	ENST00000324856.7:c.2451del	p.Leu818CysfsTer15	p.L818Cfs*15	ENST00000324856	NM_006015.4	817	gCc/gc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039386	49039386	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	248	482	0	ENST00000267163.4:c.2372del	p.Lys791SerfsTer19	p.K791Sfs*19	ENST00000267163	NM_000321.2	791	Aag/ag																																																																														
BARD1	580	MSKCC	GRCh37	2	215645620	215645621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	178	519	0	ENST00000260947.4:c.977dup	p.Asn326LysfsTer2	p.N326Kfs*2	ENST00000260947	NM_000465.2	326	aat/aaAt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722083	176722112	+	inframe_deletion	In_Frame_Del	DEL	CAATCCCCGGGCCTGGTGAAGCAGGCGAAG	CAATCCCCGGGCCTGGTGAAGCAGGCGAAG	-			P-0039551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	39	470	0	ENST00000439151.2:c.7716_7745del	p.Ser2573_Gln2582del	p.S2573_Q2582del	ENST00000439151	NM_022455.4	2572	CAATCCCCGGGCCTGGTGAAGCAGGCGAAG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	189	552	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026078	48026078	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188252826		P-0039553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	60	364	0	ENST00000234420.5:c.956C>T	p.Thr319Met	p.T319M	ENST00000234420	NM_000179.2	319	aCg/aTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41513197	41513197	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	69	372	0	ENST00000263253.7:c.101G>C	p.Gly34Ala	p.G34A	ENST00000263253	NM_001429.3	34	gGc/gCc																																																																														
APC	324	MSKCC	GRCh37	5	112128212	112128213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAACA			P-0039553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	41	306	0	ENST00000257430.4:c.716_720dup	p.Glu241GlnfsTer54	p.E241Qfs*54	ENST00000257430	NM_000038.5	239	gca/gCAACAca																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431628	6431628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	99	333	0	ENST00000356142.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000356142	NM_018890.3	61	Caa/Aaa																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119631589	119631589	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	21	381	0	ENST00000316626.5:c.677A>T	p.Glu226Val	p.E226V	ENST00000316626		226	gAg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	64	427	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	49027160	49027160	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	14	313	0	ENST00000267163.4:c.1727C>G	p.Ser576Ter	p.S576*	ENST00000267163	NM_000321.2	576	tCa/tGa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101909995	101909995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	22	217	0	ENST00000374994.4:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000374994	NM_004612.2	439	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	108	504	0	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																														
RET	5979	MSKCC	GRCh37	10	43609111	43609111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	141	648	2	ENST00000355710.3:c.1867G>A	p.Glu623Lys	p.E623K	ENST00000355710	NM_020975.4	623	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437448	49437448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	103	514	0	ENST00000301067.7:c.5437G>A	p.Glu1813Lys	p.E1813K	ENST00000301067	NM_003482.3	1813	Gaa/Aaa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441413	149441413	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	93	391	0	ENST00000286301.3:c.1627-1G>A		p.X543_splice	ENST00000286301	NM_005211.3	543																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	80	330	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0039557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	87	343	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	141	304	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577571	7577571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	161	447	0	ENST00000269305.4:c.710T>A	p.Met237Lys	p.M237K	ENST00000269305	NM_001126112.2	237	aTg/aAg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851995	63851995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	96	448	1	ENST00000279873.7:c.2773G>A	p.Ala925Thr	p.A925T	ENST00000279873	NM_032199.2	925	Gct/Act																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0039565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	56	379	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100936	41100936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	159	483	1	ENST00000373198.4:c.1420G>A	p.Glu474Lys	p.E474K	ENST00000373198	NM_133170.3	474	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577113	7577113	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	572	591	0	ENST00000269305.4:c.825del	p.Cys275TrpfsTer70	p.C275Wfs*70	ENST00000269305	NM_001126112.2	275	tgT/tg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589220	67589255	+	inframe_deletion	In_Frame_Del	DEL	AATTAATAAACCACTACCGGAATGAATCTCTAGCTC	AATTAATAAACCACTACCGGAATGAATCTCTAGCTC	-			P-0039569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	150	312	0	ENST00000274335.5:c.1209_1244del	p.Leu404_Gln415del	p.L404_Q415del	ENST00000274335		403	gAATTAATAAACCACTACCGGAATGAATCTCTAGCTCag/gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	1271	849	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100462	8100462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	448	1015	0	ENST00000346208.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000346208		146	Gcc/Acc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566442	41566442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6	366	393	0	ENST00000263253.7:c.4319C>T	p.Pro1440Leu	p.P1440L	ENST00000263253	NM_001429.3	1440	cCa/cTa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860940	45860940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	386	858	0	ENST00000391945.4:c.1255G>A	p.Glu419Lys	p.E419K	ENST00000391945	NM_000400.3	419	Gag/Aag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220489	98220489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	698	640	0	ENST00000331920.6:c.2974G>A	p.Glu992Lys	p.E992K	ENST00000331920	NM_000264.3	992	Gaa/Aaa																																																																														
AR	367	MSKCC	GRCh37	X	66766008	66766008	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	476	489	0	ENST00000374690.3:c.1020A>C	p.Glu340Asp	p.E340D	ENST00000374690	NM_000044.3	340	gaA/gaC																																																																														
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	34	756	2	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949076	44949076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	34	588	1	ENST00000377967.4:c.3637C>T	p.Arg1213Ter	p.R1213*	ENST00000377967	NM_021140.2	1213	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0039675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	158	503	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740610	58740611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	29	542	0	ENST00000305921.3:c.1516dup	p.Thr506AsnfsTer22	p.T506Nfs*22	ENST00000305921	NM_003620.3	505	-/A																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884491	151884491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	101	319	1	ENST00000262189.6:c.4864G>A	p.Val1622Met	p.V1622M	ENST00000262189	NM_170606.2	1622	Gtg/Atg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0039676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	168	592	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7574007	7574011	+	frameshift_variant	Frame_Shift_Del	DEL	CATCT	CATCT	-			P-0039676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	247	733	0	ENST00000269305.4:c.1016_1020del	p.Glu339ValfsTer6	p.E339Vfs*6	ENST00000269305	NM_001126112.2	339	gAGATG/g																																																																														
ALK	238	MSKCC	GRCh37	2	29416562	29416562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	69	558	0	ENST00000389048.3:c.4391G>A	p.Arg1464Gln	p.R1464Q	ENST00000389048	NM_004304.4	1464	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	496	613	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484339	8484339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	202	385	0	ENST00000356435.5:c.3193G>T	p.Gly1065Cys	p.G1065C	ENST00000356435		1065	Ggc/Tgc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370236	40370236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764965457		P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	289	702	9	ENST00000293328.3:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000293328	NM_012448.3	368	Cag/ag																																																																														
RB1	5925	MSKCC	GRCh37	13	49027133	49027133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	147	264	0	ENST00000267163.4:c.1700C>T	p.Ser567Leu	p.S567L	ENST00000267163	NM_000321.2	567	tCa/tTa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470536	25470536	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	493	651	0	ENST00000264709.3:c.938G>A	p.Trp313Ter	p.W313*	ENST00000264709	NM_175629.2	313	tGg/tAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023723	27023723	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	36	266	0	ENST00000324856.7:c.829G>C	p.Gly277Arg	p.G277R	ENST00000324856	NM_006015.4	277	Ggc/Cgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114917781	114917781	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	178	285	0	ENST00000543371.1:c.1271G>A	p.Gly424Glu	p.G424E	ENST00000543371	NM_001198531.1	424	gGa/gAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857694	9857694	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	211	438	0	ENST00000330684.3:c.3707G>C	p.Cys1236Ser	p.C1236S	ENST00000330684	NM_001134407.1	1236	tGc/tCc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753887	42753887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	525	636	0	ENST00000222329.4:c.377G>T	p.Gly126Val	p.G126V	ENST00000222329	NM_006494.2	126	gGt/gTt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212293136	212293136	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	139	288	0	ENST00000342788.4:c.2716T>C	p.Tyr906His	p.Y906H	ENST00000342788	NM_005235.2	906	Tat/Cat																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368540	225368540	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	115	226	0	ENST00000264414.4:c.1207-1G>C		p.X403_splice	ENST00000264414	NM_003590.4	403																																																																															
PTPRT	11122	MSKCC	GRCh37	20	41385255	41385255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	362	561	0	ENST00000373198.4:c.706G>A	p.Ala236Thr	p.A236T	ENST00000373198	NM_133170.3	236	Gcc/Acc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439213	52439213	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	533	672	0	ENST00000460680.1:c.1029del	p.Asn344MetfsTer18	p.N344Mfs*18	ENST00000460680	NM_004656.3	343	ctC/ct																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169940465	169940465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	257	399	0	ENST00000295797.4:c.8C>T	p.Thr3Ile	p.T3I	ENST00000295797	NM_002740.5	3	aCc/aTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099114	157099114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	132	135	0	ENST00000346085.5:c.51G>C	p.Lys17Asn	p.K17N	ENST00000346085	NM_020732.3	17	aaG/aaC																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38282086	38282086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	432	788	0	ENST00000425967.3:c.970A>G	p.Ile324Val	p.I324V	ENST00000425967	NM_001174067.1	324	Atc/Gtc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412715	63412715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	22	614	0	ENST00000330258.3:c.452C>G	p.Thr151Arg	p.T151R	ENST00000330258	NM_152424.3	151	aCa/aGa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413127	63413127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	46	639	1	ENST00000330258.3:c.40G>A	p.Ala14Thr	p.A14T	ENST00000330258	NM_152424.3	14	Gct/Act																																																																														
MED12	9968	MSKCC	GRCh37	X	70348204	70348204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	419	664	0	ENST00000374080.3:c.3268G>T	p.Ala1090Ser	p.A1090S	ENST00000374080		1090	Gca/Tca																																																																														
ATRX	546	MSKCC	GRCh37	X	76829760	76829760	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	38	510	0	ENST00000373344.5:c.6281C>A	p.Ser2094Ter	p.S2094*	ENST00000373344	NM_000489.3	2094	tCa/tAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	434	388	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
EP300	2033	MSKCC	GRCh37	22	41547874	41547874	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	123	453	0	ENST00000263253.7:c.2855C>G	p.Ser952Ter	p.S952*	ENST00000263253	NM_001429.3	952	tCa/tGa																																																																														
SRC	6714	MSKCC	GRCh37	20	36024580	36024580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	193	678	0	ENST00000358208.4:c.569C>T	p.Ser190Leu	p.S190L	ENST00000358208		190	tCa/tTa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374298	138374298	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	143	580	0	ENST00000289153.2:c.3146T>G	p.Leu1049Arg	p.L1049R	ENST00000289153	NM_006219.2	1049	cTc/cGc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056617	26056617	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	60	273	0	ENST00000343677.2:c.40C>G	p.Pro14Ala	p.P14A	ENST00000343677	NM_005319.3	14	Cct/Gct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216664	36216664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	161	661	4	ENST00000222270.7:c.3830C>T	p.Pro1277Leu	p.P1277L	ENST00000222270	NM_014727.1	1277	cCg/cTg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28586412	28586412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	132	471	0	ENST00000253063.3:c.54C>G	p.Phe18Leu	p.F18L	ENST00000253063	NM_031459.4	18	ttC/ttG																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834168	156834168	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	185	701	0	ENST00000524377.1:c.235C>G	p.Leu79Val	p.L79V	ENST00000524377	NM_002529.3	79	Ctg/Gtg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552603	18552603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	125	327	0	ENST00000266497.5:c.2014G>A	p.Glu672Lys	p.E672K	ENST00000266497		672	Gaa/Aaa																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217824	7217824	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	180	536	0	ENST00000380728.2:c.187G>C	p.Glu63Gln	p.E63Q	ENST00000380728		63	Gag/Cag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246215	41246215	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	125	433	0	ENST00000357654.3:c.1333G>C	p.Glu445Gln	p.E445Q	ENST00000357654	NM_007294.3	445	Gaa/Caa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41247890	41247890	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	115	454	0	ENST00000357654.3:c.643G>T	p.Glu215Ter	p.E215*	ENST00000357654	NM_007294.3	215	Gaa/Taa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250158	39250158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	172	591	0	ENST00000402219.2:c.1411T>C	p.Cys471Arg	p.C471R	ENST00000402219	NM_005633.3	471	Tgt/Cgt																																																																														
TOP1	7150	MSKCC	GRCh37	20	39690058	39690058	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	56	207	0	ENST00000361337.2:c.83A>G	p.His28Arg	p.H28R	ENST00000361337	NM_003286.2	28	cAc/cGc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39746907	39746907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	111	344	0	ENST00000361337.2:c.1921G>A	p.Glu641Lys	p.E641K	ENST00000361337	NM_003286.2	641	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41551011	41551011	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	97	380	0	ENST00000263253.7:c.3155A>C	p.Glu1052Ala	p.E1052A	ENST00000263253	NM_001429.3	1052	gAa/gCa																																																																														
EP300	2033	MSKCC	GRCh37	22	41551118	41551118	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	123	377	0	ENST00000263253.7:c.3261+1G>A		p.X1087_splice	ENST00000263253	NM_001429.3	1087																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178927388	178927388	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	93	261	0	ENST00000263967.3:c.1151A>G	p.Asn384Ser	p.N384S	ENST00000263967	NM_006218.2	384	aAt/aGt																																																																														
KDR	3791	MSKCC	GRCh37	4	55961036	55961036	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	129	598	0	ENST00000263923.4:c.2904T>G	p.Ser968Arg	p.S968R	ENST00000263923	NM_002253.2	968	agT/agG																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38967461	38967461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	113	345	0	ENST00000357387.3:c.1129C>G	p.Leu377Val	p.L377V	ENST00000357387	NM_152756.3	377	Ctt/Gtt																																																																														
MSH3	4437	MSKCC	GRCh37	5	80171652	80171652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	110	446	0	ENST00000265081.6:c.3385G>A	p.Glu1129Lys	p.E1129K	ENST00000265081	NM_002439.4	1129	Gaa/Aaa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505081	149505081	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	132	609	0	ENST00000261799.4:c.1734G>C	p.Glu578Asp	p.E578D	ENST00000261799	NM_002609.3	578	gaG/gaC																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016339	150016339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	114	371	0	ENST00000253339.5:c.367C>T	p.Leu123Phe	p.L123F	ENST00000253339		123	Ctt/Ttt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527871	157527871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	116	413	0	ENST00000346085.5:c.5596G>A	p.Glu1866Lys	p.E1866K	ENST00000346085	NM_020732.3	1866	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151927394	151927394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	18	49	0	ENST00000262189.6:c.2782G>C	p.Asp928His	p.D928H	ENST00000262189	NM_170606.2	928	Gat/Cat																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98218592	98218592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	139	484	0	ENST00000331920.6:c.3272G>T	p.Gly1091Val	p.G1091V	ENST00000331920	NM_000264.3	1091	gGc/gTc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248148	110248148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	180	553	0	ENST00000374672.4:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000374672	NM_004235.4	442	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70340908	70340908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	116	645	0	ENST00000374080.3:c.641G>A	p.Gly214Asp	p.G214D	ENST00000374080		214	gGc/gAc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123156514	123156514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	80	259	0	ENST00000218089.9:c.37C>G	p.Leu13Val	p.L13V	ENST00000218089	NM_001042749.1	13	Cta/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	294	614	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870969	12870970	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TCTG			P-0039681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	109	371	0	ENST00000228872.4:c.196_197insTCTG	p.Asn66IlefsTer2	p.N66Ifs*2	ENST00000228872	NM_004064.3	66	aat/aTCTGat																																																																														
CD276	80381	MSKCC	GRCh37	15	73996813	73996813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	81	339	0	ENST00000318443.5:c.1369G>A	p.Gly457Arg	p.G457R	ENST00000318443	NM_001024736.1	457	Ggg/Agg																																																																														
APC	324	MSKCC	GRCh37	5	112173779	112173779	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	12	307	0	ENST00000257430.4:c.2488G>C	p.Val830Leu	p.V830L	ENST00000257430	NM_000038.5	830	Gtg/Ctg																																																																														
APC	324	MSKCC	GRCh37	5	112175189	112175204	+	frameshift_variant	Frame_Shift_Del	DEL	AATACCCTGCAAATAG	AATACCCTGCAAATAG	-			P-0039681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	12	179	0	ENST00000257430.4:c.3898_3913del	p.Asn1300GlnfsTer3	p.N1300Qfs*3	ENST00000257430	NM_000038.5	1300	AATACCCTGCAAATAGca/ca																																																																														
APC	324	MSKCC	GRCh37	5	112173804	112173806	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	A			P-0039681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	14	303	0	ENST00000257430.4:c.2513_2515delinsA	p.Arg838LysfsTer5	p.R838Kfs*5	ENST00000257430	NM_000038.5	838	aGAGga/aAga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	136	370	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	105	217	1				ENST00000310581	NM_198253.2																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11141567	11141567	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0039682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	211	644	0	ENST00000344626.4:c.3544C>T	p.Gln1182Ter	p.Q1182*	ENST00000344626	NM_003072.3	1182	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	559	897	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821602	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCC	GCCGCCGCC	-			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	62	132	0	ENST00000268489.5:c.10573_10581delGGCGGCGGC	p.Gly3525_Gly3527del	p.G3525_G3527del	ENST00000268489	NM_006885.3	3525	GGCGGCGGC/-																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602322	10602322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	573	848	0	ENST00000171111.5:c.1256G>T	p.Gly419Val	p.G419V	ENST00000171111	NM_203500.1	419	gGg/gTg																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194706	29194706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	185	803	0	ENST00000240100.2:c.1022C>T	p.Ala341Val	p.A341V	ENST00000240100	NM_001394.6	341	gCg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431079	49431079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	191	615	0	ENST00000301067.7:c.10060G>T	p.Gly3354Trp	p.G3354W	ENST00000301067	NM_003482.3	3354	Ggg/Tgg																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175916356	175916356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	182	296	1	ENST00000367669.3:c.2153C>T	p.Ala718Val	p.A718V	ENST00000367669	NM_022457.5	718	gCt/gTt																																																																														
BLM	641	MSKCC	GRCh37	15	91312699	91312699	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	111	307	0	ENST00000355112.3:c.2438G>C	p.Arg813Thr	p.R813T	ENST00000355112	NM_000057.2	813	aGa/aCa																																																																														
STK11	6794	MSKCC	GRCh37	19	1207142	1207243	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAAGATCCTCAAGAAGAAGAAGTTGCGAAGGATCCCCAACGGGGAGGCCAACGTGAAGAAGTAAGTATGGCTTGCTGGGGTCGGGGCCGGGCCGGGCCAGT	TCAAGATCCTCAAGAAGAAGAAGTTGCGAAGGATCCCCAACGGGGAGGCCAACGTGAAGAAGTAAGTATGGCTTGCTGGGGTCGGGGCCGGGCCGGGCCAGT	-			P-0039785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	425	842	0	ENST00000326873.7:c.230_290+41del		p.X77_splice	ENST00000326873	NM_000455.4	77																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	136	345	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	184	544	0				ENST00000310581	NM_198253.2																																																																																
ETV6	2120	MSKCC	GRCh37	12	11992180	11992180	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	91	377	0	ENST00000396373.4:c.270T>G	p.Asn90Lys	p.N90K	ENST00000396373	NM_001987.4	90	aaT/aaG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442892	49442892	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	223	549	0	ENST00000301067.7:c.4016T>A	p.Leu1339Gln	p.L1339Q	ENST00000301067	NM_003482.3	1339	cTg/cAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892256	9892256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	70	450	0	ENST00000330684.3:c.2234G>T	p.Cys745Phe	p.C745F	ENST00000330684	NM_001134407.1	745	tGc/tTc																																																																														
LYN	4067	MSKCC	GRCh37	8	56912104	56912104	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	89	504	0	ENST00000519728.1:c.1334del	p.Pro445GlnfsTer8	p.P445Qfs*8	ENST00000519728	NM_002350.3	444	taC/ta																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992680	68992680	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	93	387	0	ENST00000288368.4:c.1645C>T	p.Leu549Phe	p.L549F	ENST00000288368	NM_024870.2	549	Ctt/Ttt																																																																														
AR	367	MSKCC	GRCh37	X	66766343	66766343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	27	100	0	ENST00000374690.3:c.1355G>T	p.Gly452Val	p.G452V	ENST00000374690	NM_000044.3	452	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	166	487	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129428	64129428	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61736650		P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	271	657	0	ENST00000334205.4:c.860C>T	p.Ala287Val	p.A287V	ENST00000334205	NM_003942.2	287	gCg/gTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041046	29041046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	47	262	0	ENST00000282397.4:c.382A>G	p.Ile128Val	p.I128V	ENST00000282397	NM_002019.4	128	Att/Gtt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628366	86628366	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	72	164	0	ENST00000274376.6:c.739del	p.Ser247LeufsTer6	p.S247Lfs*6	ENST00000274376	NM_002890.2	245	cgT/cg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023603	27023603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	43	515	0	ENST00000324856.7:c.709G>A	p.Gly237Ser	p.G237S	ENST00000324856	NM_006015.4	237	Ggc/Agc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239375	123239375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	20	302	0	ENST00000358487.5:c.2462C>A	p.Thr821Lys	p.T821K	ENST00000358487	NM_000141.4	821	aCa/aAa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129428	64129429	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	271	659	1	ENST00000334205.4:c.860_861delinsTT	p.Ala287Val	p.A287V	ENST00000334205	NM_003942.2	287	gCG/gTT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245973	46245973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142127790		P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	86	232	1	ENST00000334344.6:c.4067C>T	p.Pro1356Leu	p.P1356L	ENST00000334344	NM_152641.2	1356	cCg/cTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974745	15974745	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	32	282	0	ENST00000268712.3:c.4130T>A	p.Ile1377Lys	p.I1377K	ENST00000268712	NM_006311.3	1377	aTa/aAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29687505	29687505	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	92	269	0	ENST00000358273.4:c.8161C>T	p.Gln2721Ter	p.Q2721*	ENST00000358273	NM_001042492.2	2721	Caa/Taa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687382	37687382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	28	425	0	ENST00000447079.4:c.4286C>T	p.Ser1429Phe	p.S1429F	ENST00000447079	NM_015083.1	1429	tCt/tTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602551	10602551	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	184	607	0	ENST00000171111.5:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000171111	NM_203500.1	343	Gag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628335	187628335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	175	491	0	ENST00000441802.2:c.2647C>G	p.Leu883Val	p.L883V	ENST00000441802	NM_005245.3	883	Ctg/Gtg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32806006	32806006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	121	486	1	ENST00000374899.4:c.5G>T	p.Arg2Leu	p.R2L	ENST00000374899	NM_018833.2	2	cGg/cTg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148516729	148516729	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	149	278	0	ENST00000320356.2:c.958C>G	p.Leu320Val	p.L320V	ENST00000320356	NM_004456.4	320	Cta/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022050-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	134	673	0	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG																																																																														
APC	324	MSKCC	GRCh37	5	112173377	112173377	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022050-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	45	260	0	ENST00000257430.4:c.2086G>T	p.Glu696Ter	p.E696*	ENST00000257430	NM_000038.5	696	Gaa/Taa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117909	70117911	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0022050-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	94	393	0	ENST00000245479.2:c.378_380del	p.Gln126_Tyr127delinsHis	p.Q126_Y127delinsH	ENST00000245479	NM_000346.3	126	cAGTac/cac																																																																														
ATRX	546	MSKCC	GRCh37	X	76940500	76940500	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0026492-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	365	467	0	ENST00000373344.5:c.595-2del		p.X199_splice	ENST00000373344	NM_000489.3	199																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10599880	10599880	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026492-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			824	255	1208	0	ENST00000171111.5:c.1696A>T	p.Ile566Phe	p.I566F	ENST00000171111	NM_203500.1	566	Atc/Ttc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	65	316	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	102	323	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	147	222	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	98	295	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	43	242	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	39	147	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	177	308	2	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	11	223	1	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	43	146	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	79	300	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097200	11097205	+	inframe_deletion	In_Frame_Del	DEL	GGCCCT	GGCCCT	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	54	294	1	ENST00000344626.4:c.708_713del	p.Gly243_Pro244del	p.G243_P244del	ENST00000344626	NM_003072.3	231	GGCCCT/-																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777898	3777898	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	130	402	0	ENST00000262367.5:c.7150del	p.His2384ThrfsTer12	p.H2384Tfs*12	ENST00000262367	NM_004380.2	2384	Cac/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	8	387	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	126	332	0	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222449	53222451	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	84	354	2	ENST00000375401.3:c.4381_4383del	p.Arg1461del	p.R1461del	ENST00000375401	NM_004187.3	1461	CGG/-																																																																														
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	76	336	4	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528825	157528825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	86	268	1	ENST00000346085.5:c.6554del	p.Pro2185ArgfsTer8	p.P2185Rfs*8	ENST00000346085	NM_020732.3	2184	Ccc/cc																																																																														
KDR	3791	MSKCC	GRCh37	4	55979551	55979551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	79	326	0	ENST00000263923.4:c.896G>A	p.Arg299Gln	p.R299Q	ENST00000263923	NM_002253.2	299	cGg/cAg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	78	277	3	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911443	32911443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	34	280	0	ENST00000380152.3:c.2957del	p.Asn986IlefsTer5	p.N986Ifs*5	ENST00000380152		984	gAa/ga																																																																														
B2M	567	MSKCC	GRCh37	15	45003813	45003813	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	44	277	1	ENST00000558401.1:c.67+2T>C		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	13	42	1	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255142	16255143	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	89	203	0	ENST00000375759.3:c.2417_2418delGA	p.Arg806ThrfsTer14	p.R806Tfs*14	ENST00000375759	NM_015001.2	803	GAg/g																																																																														
POLE	5426	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	173	330	2	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	64	263	1	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865794	56865794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	54	238	0	ENST00000308159.5:c.1126C>T	p.Arg376Cys	p.R376C	ENST00000308159	NM_014669.4	376	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829454	72829454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	93	338	0	ENST00000268489.5:c.7127C>T	p.Thr2376Met	p.T2376M	ENST00000268489	NM_006885.3	2376	aCg/aTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	38	342	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	70	310	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	108	450	1	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	45	322	2	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	109	363	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177984	56177986	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	79	271	0	ENST00000399503.3:c.2965_2967del	p.Ser989del	p.S989del	ENST00000399503	NM_005921.1	986	cCTTct/cct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	122	350	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	44	240	0	ENST00000274335.5:c.1746-2A>G		p.X582_splice	ENST00000274335		582																																																																															
POLD1	5424	MSKCC	GRCh37	19	50906370	50906370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	79	365	0	ENST00000440232.2:c.1036del	p.Glu346SerfsTer47	p.E346Sfs*47	ENST00000440232	NM_002691.3	344	tGg/tg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	181	328	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38616977	38616977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	67	280	0	ENST00000299084.4:c.395delA	p.Asn132MetfsTer20	p.N132Mfs*20	ENST00000299084	NM_152594.2	130	tcA/tc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655248	45655248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	105	328	0	ENST00000407780.3:c.604G>A	p.Val202Met	p.V202M	ENST00000407780	NM_001283052.1	202	Gtg/Atg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	99	350	2	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205092	38205092	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	74	368	5	ENST00000317025.8:c.598del	p.Ser200AlafsTer20	p.S200Afs*20	ENST00000317025	NM_023034.1	200	Agc/gc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860074	57860075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	88	331	1	ENST00000228682.2:c.821dupG	p.Cys275LeufsTer32	p.C275Lfs*32	ENST00000228682	NM_005269.2	272	tgg/tGgg																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175996765	175996765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	21	320	0	ENST00000367669.3:c.1672G>T	p.Val558Leu	p.V558L	ENST00000367669	NM_022457.5	558	Gtg/Ttg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120541733	120541733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	98	338	0	ENST00000229340.5:c.124G>A	p.Gly42Arg	p.G42R	ENST00000229340	NM_006861.6	42	Gga/Aga																																																																														
MST1R	4486	MSKCC	GRCh37	3	49928893	49928893	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	106	358	0	ENST00000296474.3:c.3473A>G	p.His1158Arg	p.H1158R	ENST00000296474	NM_002447.2	1158	cAt/cGt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11303359	11303359	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	84	277	0	ENST00000361445.4:c.1226-2A>G		p.X409_splice	ENST00000361445	NM_004958.3	409																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256107	16256108	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	87	299	0	ENST00000375759.3:c.3379_3380del	p.Glu1127ArgfsTer3	p.E1127Rfs*3	ENST00000375759	NM_015001.2	1124	ccAGag/ccag																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933741	36933741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	97	358	0	ENST00000361632.4:c.1658A>G	p.Glu553Gly	p.E553G	ENST00000361632		553	gAg/gGg																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117690314	117690314	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	23	289	0	ENST00000369458.3:c.815T>C	p.Leu272Pro	p.L272P	ENST00000369458	NM_024626.3	272	cTt/cCt																																																																														
ATM	472	MSKCC	GRCh37	11	108183191	108183191	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	34	201	0	ENST00000278616.4:c.5977del	p.Ser1993ValfsTer7	p.S1993Vfs*7	ENST00000278616	NM_000051.3	1991	gAa/ga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	461421	461421	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	70	302	0	ENST00000399788.2:c.1099G>T	p.Gly367Ter	p.G367*	ENST00000399788	NM_001042603.1	367	Gga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650592	18650593	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	74	351	0	ENST00000266497.5:c.2805dup	p.Ile936TyrfsTer21	p.I936Yfs*21	ENST00000266497		935	ctt/cTtt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245882	46245882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	113	232	0	ENST00000334344.6:c.3976C>T	p.Pro1326Ser	p.P1326S	ENST00000334344	NM_152641.2	1326	Cca/Tca																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527868	103527868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	56	195	0	ENST00000355739.4:c.3176G>A	p.Gly1059Asp	p.G1059D	ENST00000355739	NM_000123.3	1059	gGc/gAc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986566	36986566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	21	217	0	ENST00000354822.5:c.1123T>C	p.Ser375Pro	p.S375P	ENST00000354822	NM_001079668.2	375	Tcc/Ccc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68353736	68353736	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	44	166	0	ENST00000487270.1:c.573-2A>G		p.X191_splice	ENST00000487270	NM_133509.3	191																																																																															
B2M	567	MSKCC	GRCh37	15	45007893	45007893	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	24	248	0	ENST00000558401.1:c.340A>T	p.Lys114Ter	p.K114*	ENST00000558401	NM_004048.2	114	Aag/Tag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729210	66729210	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	24	352	0	ENST00000307102.5:c.418A>C	p.Ser140Arg	p.S140R	ENST00000307102	NM_002755.3	140	Agt/Cgt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434833	99434834	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	86	246	0	ENST00000268035.6:c.924dup	p.Ser309LeufsTer17	p.S309Lfs*17	ENST00000268035	NM_000875.3	307	tgc/tgCc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136361	2136361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	95	329	0	ENST00000219476.3:c.4830G>A	p.Trp1610Ter	p.W1610*	ENST00000219476	NM_000548.3	1610	tgG/tgA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778207	3778207	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	91	331	0	ENST00000262367.5:c.6841del	p.Ala2281GlnfsTer21	p.A2281Qfs*21	ENST00000262367	NM_004380.2	2281	Gca/ca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993735	72993735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	101	244	0	ENST00000268489.5:c.310C>G	p.Pro104Ala	p.P104A	ENST00000268489	NM_006885.3	104	Ccc/Gcc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462592	40462592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	96	332	0	ENST00000345506.4:c.2290G>T	p.Val764Leu	p.V764L	ENST00000345506	NM_003152.3	764	Gtg/Ttg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435921	56435921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	67	258	0	ENST00000407977.2:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000407977		406	Gca/Aca																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78854243	78854243	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs76608178		P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	98	335	0	ENST00000306801.3:c.1538A>C	p.Asn513Thr	p.N513T	ENST00000306801	NM_020761.2	513	aAc/aCc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56376790	56376790	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	40	218	0	ENST00000348428.3:c.828+2T>C		p.X276_splice	ENST00000348428	NM_006785.3	276																																																																															
INSR	3643	MSKCC	GRCh37	19	7267424	7267424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	42	262	0	ENST00000302850.5:c.584A>G	p.Asn195Ser	p.N195S	ENST00000302850	NM_000208.2	195	aAc/aGc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288441	15288441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	62	198	0	ENST00000263388.2:c.4298G>A	p.Cys1433Tyr	p.C1433Y	ENST00000263388	NM_000435.2	1433	tGc/tAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227811	36227811	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	128	343	0	ENST00000222270.7:c.7298-2A>G		p.X2433_splice	ENST00000222270	NM_014727.1	2433																																																																															
ERF	2077	MSKCC	GRCh37	19	42753544	42753545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	109	318	0	ENST00000222329.4:c.719dup	p.Gly241TrpfsTer3	p.G241Wfs*3	ENST00000222329	NM_006494.2	240	ggt/ggGt																																																																														
CIC	23152	MSKCC	GRCh37	19	42792089	42792089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	81	259	0	ENST00000575354.2:c.893G>A	p.Arg298Gln	p.R298Q	ENST00000575354	NM_015125.3	298	cGg/cAg																																																																														
BARD1	580	MSKCC	GRCh37	2	215645495	215645495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	100	366	0	ENST00000260947.4:c.1103G>A	p.Cys368Tyr	p.C368Y	ENST00000260947	NM_000465.2	368	tGc/tAc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39704816	39704817	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	37	102	0	ENST00000361337.2:c.162_163del	p.His54GlnfsTer4	p.H54Qfs*4	ENST00000361337	NM_003286.2	54	cAT/c																																																																														
EP300	2033	MSKCC	GRCh37	22	41546064	41546065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	101	314	0	ENST00000263253.7:c.2683dupC	p.Gln895ProfsTer14	p.Q895Pfs*14	ENST00000263253	NM_001429.3	893	-/C																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275323	41275323	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	17	282	0	ENST00000349496.5:c.1489C>G	p.Leu497Val	p.L497V	ENST00000349496	NM_001904.3	497	Ctc/Gtc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808651	1808651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	61	403	1	ENST00000260795.2:c.2264C>T	p.Thr755Met	p.T755M	ENST00000260795		755	aCg/aTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268222	153268222	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	63	137	0	ENST00000281708.4:c.586A>G	p.Thr196Ala	p.T196A	ENST00000281708	NM_033632.3	196	Acc/Gcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294050	1294050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	72	370	0	ENST00000310581.5:c.951G>T	p.Trp317Cys	p.W317C	ENST00000310581	NM_198253.2	317	tgG/tgT																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38957774	38957775	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	43	276	0	ENST00000357387.3:c.2478dup	p.Gln827ThrfsTer15	p.Q827Tfs*15	ENST00000357387	NM_152756.3	826	-/A																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659282	86659282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	47	201	0	ENST00000274376.6:c.1571T>C	p.Val524Ala	p.V524A	ENST00000274376	NM_002890.2	524	gTa/gCa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176719025	176719025	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	68	206	0	ENST00000439151.2:c.6329A>G	p.Gln2110Arg	p.Q2110R	ENST00000439151	NM_022455.4	2110	cAg/cGg																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778216	27778216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	80	297	0	ENST00000369163.2:c.365C>T	p.Pro122Leu	p.P122L	ENST00000369163	NM_003536.2	122	cCc/cTc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468191	50468191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	94	305	0	ENST00000331340.3:c.1426A>G	p.Met476Val	p.M476V	ENST00000331340	NM_006060.4	476	Atg/Gtg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508538	106508538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	76	183	0	ENST00000359195.3:c.532C>T	p.Arg178Cys	p.R178C	ENST00000359195	NM_002649.2	178	Cgt/Tgt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740787	145740787	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	113	372	0	ENST00000428558.2:c.1313A>G	p.Gln438Arg	p.Q438R	ENST00000428558	NM_004260.3	438	cAa/cGa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245132	53245133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	80	307	0	ENST00000375401.3:c.807dup	p.Thr270HisfsTer20	p.T270Hfs*20	ENST00000375401	NM_004187.3	269	-/C																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412775	63412775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	90	300	0	ENST00000330258.3:c.392A>G	p.Gln131Arg	p.Q131R	ENST00000330258	NM_152424.3	131	cAg/cGg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412839	63412839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	100	329	0	ENST00000330258.3:c.328G>A	p.Val110Ile	p.V110I	ENST00000330258	NM_152424.3	110	Gtc/Atc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038226-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			974	100	781	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038226-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			939	161	736	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	48942685	48942685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038226-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	42	332	0	ENST00000267163.4:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000267163	NM_000321.2	358	Cga/Tga																																																																														
IRF4	3662	MSKCC	GRCh37	6	393194	393194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038226-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	37	500	0	ENST00000380956.4:c.42G>C	p.Met14Ile	p.M14I	ENST00000380956	NM_001195286.1	14	atG/atC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101276	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCCAGG	GCCCCCCAGG	-			P-0038226-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			640	74	695	0	ENST00000324856.7:c.4554_4563del	p.Gln1519ProfsTer5	p.Q1519Pfs*5	ENST00000324856	NM_006015.4	1517	GCCCCCCAGGgc/gc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474652	138474652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038226-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	38	549	0	ENST00000289153.2:c.341G>A	p.Arg114Lys	p.R114K	ENST00000289153	NM_006219.2	114	aGa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	5	302	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974770	21974775	+	inframe_deletion	In_Frame_Del	DEL	GGCCGT	GGCCGT	-			P-0039457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	15	266	0	ENST00000304494.5:c.52_57delACGGCC	p.Thr18_Ala19del	p.T18_A19del	ENST00000304494	NM_000077.4	18	ACGGCC/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974770	21974775	+	inframe_deletion	In_Frame_Del	DEL	GGCCGT	GGCCGT	-			P-0039457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	15	266	0	ENST00000304494.5:c.52_57delACGGCC	p.Thr18_Ala19del	p.T18_A19del	ENST00000304494	NM_000077.4	18	ACGGCC/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	67	255	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	128	314	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0039462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	74	404	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	36	344	0	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																																																														
EZH2	2146	MSKCC	GRCh37	7	148516750	148516750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	38	229	0	ENST00000320356.2:c.937C>T	p.Arg313Trp	p.R313W	ENST00000320356	NM_004456.4	313	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097782	27097783	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0039462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	70	337	0	ENST00000324856.7:c.3372_3373del	p.Lys1125ValfsTer67	p.K1125Vfs*67	ENST00000324856	NM_006015.4	1124	aAG/a																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797428	45797428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	100	665	0	ENST00000372115.3:c.1049G>A	p.Arg350His	p.R350H	ENST00000372115	NM_001048171.1	350	cGc/cAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591118	67591119	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	54	218	0	ENST00000274335.5:c.1712dup	p.Gln572ProfsTer30	p.Q572Pfs*30	ENST00000274335		571	atc/aTtc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094416	27094416	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	281	466	0	ENST00000324856.7:c.3125del	p.Pro1042LeufsTer17	p.P1042Lfs*17	ENST00000324856	NM_006015.4	1042	Cct/ct																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	64	286	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339093	65339093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	35	361	0	ENST00000342505.4:c.443del	p.Pro148LeufsTer20	p.P148Lfs*20	ENST00000342505	NM_002227.2	148	cCt/ct																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120465042	120465042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	21	341	1	ENST00000256646.2:c.5030A>G	p.Gln1677Arg	p.Q1677R	ENST00000256646	NM_024408.3	1677	cAg/cGg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156848931	156848931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	39	611	2	ENST00000524377.1:c.1823C>T	p.Ala608Val	p.A608V	ENST00000524377	NM_002529.3	608	gCc/gTc																																																																														
AKT3	10000	MSKCC	GRCh37	1	243668637	243668637	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	15	238	0	ENST00000263826.5:c.1355-1G>A		p.X452_splice	ENST00000263826	NM_005465.4	452																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717699	89717699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	93	345	0	ENST00000371953.3:c.724G>T	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	242	Gag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	92	298	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	94	291	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205478	61205478	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	23	335	0	ENST00000301761.2:c.267del	p.Phe89LeufsTer9	p.F89Lfs*9	ENST00000301761	NM_017841.2	88	cTt/ct																																																																														
CCND1	595	MSKCC	GRCh37	11	69466003	69466038	+	inframe_deletion	In_Frame_Del	DEL	GTGGACCTGGCTTGCACACCCACCGACGTGCGGGAC	GTGGACCTGGCTTGCACACCCACCGACGTGCGGGAC	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	36	765	0	ENST00000227507.2:c.847_882del	p.Leu283_Asp294del	p.L283_D294del	ENST00000227507	NM_053056.2	281	GTGGACCTGGCTTGCACACCCACCGACGTGCGGGAC/-																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939843	71939843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	106	731	1	ENST00000298229.2:c.470G>A	p.Ser157Asn	p.S157N	ENST00000298229	NM_001567.3	157	aGc/aAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	100	853	3	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	179	788	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948755	71948755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	80	805	2	ENST00000298229.2:c.3470del	p.Gly1157AspfsTer45	p.G1157Dfs*45	ENST00000298229	NM_001567.3	1156	cGg/cg																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94219109	94219109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	51	275	1	ENST00000323929.3:c.295G>A	p.Val99Ile	p.V99I	ENST00000323929	NM_005591.3	99	Gtc/Atc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360507	118360507	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	22	249	0	ENST00000534358.1:c.4480C>T	p.Gln1494Ter	p.Q1494*	ENST00000534358	NM_005933.3	1494	Cag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118369100	118369101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	25	244	0	ENST00000534358.1:c.5822dup	p.Pro1942AlafsTer31	p.P1942Afs*31	ENST00000534358	NM_005933.3	1940	caa/cAaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444960	49444960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	36	527	0	ENST00000301067.7:c.2506del	p.Gln836SerfsTer94	p.Q836Sfs*94	ENST00000301067	NM_003482.3	836	Cag/ag																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856434	111856434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	24	259	0	ENST00000341259.2:c.489delC	p.Thr165ProfsTer32	p.T165Pfs*32	ENST00000341259	NM_005475.2	162	gCc/gc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226120	2226120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	87	781	0	ENST00000326181.6:c.1817C>T	p.Ala606Val	p.A606V	ENST00000326181	NM_032271.2	606	gCg/gTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779136	3779136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	34	630	0	ENST00000262367.5:c.5912A>G	p.His1971Arg	p.H1971R	ENST00000262367	NM_004380.2	1971	cAc/cGc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644874	67644874	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	31	453	0	ENST00000264010.4:c.143del	p.Gly48ValfsTer14	p.G48Vfs*14	ENST00000264010	NM_006565.3	47	Ggg/gg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650710	67650710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	166	432	0	ENST00000264010.4:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000264010	NM_006565.3	339	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	32	516	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40497609	40497609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	92	576	1	ENST00000264657.5:c.340C>T	p.Arg114Cys	p.R114C	ENST00000264657	NM_139276.2	114	Cgc/Tgc																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804373	46804373	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145059285		P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	39	459	1	ENST00000290295.7:c.634G>A	p.Ala212Thr	p.A212T	ENST00000290295	NM_006361.5	212	Gcc/Acc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	41	639	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856039	45856039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	55	692	1	ENST00000391945.4:c.1867G>A	p.Val623Ile	p.V623I	ENST00000391945	NM_000400.3	623	Gtc/Atc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906370	50906370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	91	758	2	ENST00000440232.2:c.1036del	p.Glu346SerfsTer47	p.E346Sfs*47	ENST00000440232	NM_002691.3	344	tGg/tg																																																																														
ALK	238	MSKCC	GRCh37	2	29416646	29416646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	32	367	0	ENST00000389048.3:c.4307G>A	p.Arg1436His	p.R1436H	ENST00000389048	NM_004304.4	1436	cGc/cAc																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96920691	96920691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	35	415	1	ENST00000258439.3:c.289G>A	p.Ala97Thr	p.A97T	ENST00000258439	NM_001193304.2	97	Gcc/Acc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99189323	99189323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	49	411	0	ENST00000074304.5:c.2579G>A	p.Arg860Gln	p.R860Q	ENST00000074304	NM_001134224.1	860	cGg/cAg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	19	228	0	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																																																														
INHA	3623	MSKCC	GRCh37	2	220439529	220439529	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	32	639	0	ENST00000243786.2:c.382T>C	p.Ser128Pro	p.S128P	ENST00000243786	NM_002191.3	128	Tca/Cca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125763	47125763	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144171734		P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	19	281	0	ENST00000409792.3:c.5507C>T	p.Pro1836Leu	p.P1836L	ENST00000409792	NM_014159.6	1836	cCg/cTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390125	89390125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	21	262	0	ENST00000336596.2:c.874C>T	p.Pro292Ser	p.P292S	ENST00000336596	NM_005233.5	292	Cct/Tct																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	39	554	3	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	19	282	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	33	282	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	14	271	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253823	153253823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	21	277	0	ENST00000281708.4:c.910G>T	p.Ala304Ser	p.A304S	ENST00000281708	NM_033632.3	304	Gca/Tca																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867418	35867418	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200687605		P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	14	215	0	ENST00000303115.3:c.232G>A	p.Val78Met	p.V78M	ENST00000303115	NM_002185.3	78	Gtg/Atg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628428	86628428	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	12	163	0	ENST00000274376.6:c.801del	p.Lys267AsnfsTer12	p.K267Nfs*12	ENST00000274376	NM_002890.2	266	gAa/ga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176715859	176715859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	43	459	0	ENST00000439151.2:c.6191G>T	p.Gly2064Val	p.G2064V	ENST00000439151	NM_022455.4	2064	gGg/gTg																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020979	26020979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	25	351	0	ENST00000357647.3:c.262T>C	p.Ser88Pro	p.S88P	ENST00000357647	NM_003529.2	88	Tcc/Ccc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099468	157099470	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs1429292576		P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	21	326	0	ENST00000346085.5:c.413_415del	p.Asn138del	p.N138del	ENST00000346085	NM_020732.3	135	tcCAAc/tcc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971299	13971299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	28	359	0	ENST00000405192.2:c.630G>A	p.Met210Ile	p.M210I	ENST00000405192	NM_001163147.1	210	atG/atA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859207	151859207	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	17	267	0	ENST00000262189.6:c.11455G>T	p.Gly3819Ter	p.G3819*	ENST00000262189	NM_170606.2	3819	Gga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860833	151860833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	36	333	0	ENST00000262189.6:c.9829C>A	p.Pro3277Thr	p.P3277T	ENST00000262189	NM_170606.2	3277	Cca/Aca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878694	151878694	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	18	320	0	ENST00000262189.6:c.6251A>T	p.Asn2084Ile	p.N2084I	ENST00000262189	NM_170606.2	2084	aAt/aTt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370919	55370920	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	192	685	0	ENST00000297316.4:c.224dup	p.Met76HisfsTer5	p.M76Hfs*5	ENST00000297316	NM_022454.3	74	gct/gcTt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	56	792	1	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
AGO2	27161	MSKCC	GRCh37	8	141583008	141583008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	71	544	0	ENST00000220592.5:c.239A>G	p.Gln80Arg	p.Q80R	ENST00000220592	NM_012154.3	80	cAg/cGg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	57	758	1	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																																																														
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	51	798	4	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139438500	139438500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	58	782	2	ENST00000277541.6:c.116C>T	p.Ala39Val	p.A39V	ENST00000277541	NM_017617.3	39	gCg/gTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931690	39931690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	55	622	1	ENST00000378444.4:c.2909C>T	p.Ala970Val	p.A970V	ENST00000378444	NM_001123385.1	970	gCg/gTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922901	44922901	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	48	454	0	ENST00000377967.4:c.1762A>G	p.Thr588Ala	p.T588A	ENST00000377967	NM_021140.2	588	Aca/Gca																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045888	47045889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	32	644	0	ENST00000329236.7:c.2453dup	p.Ser819LeufsTer83	p.S819Lfs*83	ENST00000329236	NM_001204466.1	817	cgg/cGgg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426675	47426675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	67	687	0	ENST00000377045.4:c.920C>A	p.Pro307His	p.P307H	ENST00000377045	NM_001654.4	307	cCc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349632	70349632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	67	628	2	ENST00000374080.3:c.3794G>A	p.Gly1265Asp	p.G1265D	ENST00000374080		1265	gGc/gAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76814170	76814171	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	13	233	0	ENST00000373344.5:c.6473dup	p.Pro2159AlafsTer6	p.P2159Afs*6	ENST00000373344	NM_000489.3	2158	aag/aaAg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185016	123185016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	33	326	0	ENST00000218089.9:c.1063T>C	p.Tyr355His	p.Y355H	ENST00000218089	NM_001042749.1	355	Tat/Cat																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0039469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	221	211	1	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38279438	38279438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2293	176	527	0	ENST00000425967.3:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000425967	NM_001174067.1	351	Gac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828002	72828002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	726	771	0	ENST00000268489.5:c.8579G>A	p.Gly2860Glu	p.G2860E	ENST00000268489	NM_006885.3	2860	gGa/gAa																																																																														
CD79B	974	MSKCC	GRCh37	17	62007240	62007240	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	263	679	1	ENST00000392795.3:c.442A>T	p.Thr148Ser	p.T148S	ENST00000392795	NM_001039933.1	148	Acc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	83	343	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	131	570	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945109	44945109	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	62	265	0	ENST00000377967.4:c.3434-1G>T		p.X1145_splice	ENST00000377967	NM_021140.2	1145																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435267	49435267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	147	685	0	ENST00000301067.7:c.6286A>G	p.Lys2096Glu	p.K2096E	ENST00000301067	NM_003482.3	2096	Aag/Gag																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56787266	56787266	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	122	496	0	ENST00000337432.4:c.752A>G	p.Asp251Gly	p.D251G	ENST00000337432	NM_058216.2	251	gAc/gGc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763509	59763509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	72	521	1	ENST00000259008.2:c.2593C>T	p.Arg865Trp	p.R865W	ENST00000259008	NM_032043.2	865	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574004	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAACATCTCGAAGCGCTCAC			P-0039583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	190	1013	1	ENST00000269305.4:c.1004_1023dup	p.Arg342ValfsTer10	p.R342Vfs*10	ENST00000269305	NM_001126112.2	341	-/GTGAGCGCTTCGAGATGTTC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0039584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	139	513	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	397	805	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191199	2191199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	53	893	0	ENST00000398665.3:c.453C>G	p.Ile151Met	p.I151M	ENST00000398665	NM_032482.2	151	atC/atG																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45422944	45422944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	21	372	0	ENST00000262160.6:c.184G>A	p.Glu62Lys	p.E62K	ENST00000262160	NM_005901.5	62	Gag/Aag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603047	48603047	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	30	386	0	ENST00000342988.3:c.1348C>T	p.Gln450Ter	p.Q450*	ENST00000342988	NM_005359.5	450	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	60	488	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133253176	133253176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	33	613	1	ENST00000320574.5:c.865G>A	p.Glu289Lys	p.E289K	ENST00000320574	NM_006231.2	289	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420315	88420315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	58	506	0	ENST00000360948.2:c.2371C>G	p.Arg791Gly	p.R791G	ENST00000360948	NM_001012338.2	791	Cgg/Ggg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561114	9561114	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	67	459	0	ENST00000353224.5:c.668C>A	p.Ser223Ter	p.S223*	ENST00000353224	NM_177990.2	223	tCg/tAg																																																																														
IRF4	3662	MSKCC	GRCh37	6	405093	405093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	280	659	0	ENST00000380956.4:c.1175C>G	p.Pro392Arg	p.P392R	ENST00000380956	NM_001195286.1	392	cCa/cGa																																																																														
AR	367	MSKCC	GRCh37	X	66765891	66765891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	44	1264	0	ENST00000374690.3:c.903G>C	p.Lys301Asn	p.K301N	ENST00000374690	NM_000044.3	301	aaG/aaC																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427579	72427579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	106	398	0	ENST00000477973.2:c.909C>T	p.Thr304Met	p.T304M	ENST00000477973	NM_012234.5	304	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	106	501	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	98	533	5	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	62	844	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	138	540	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
B2M	567	MSKCC	GRCh37	15	45007620	45007620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	59	260	0	ENST00000558401.1:c.68-1G>T		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	90	363	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273105	18273105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	213	852	2	ENST00000222254.8:c.1000del	p.Asp334ThrfsTer7	p.D334Tfs*7	ENST00000222254	NM_005027.3	332	tGg/tg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17937659	17937659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144968714		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	235	850	1	ENST00000458235.1:c.3268G>A	p.Ala1090Thr	p.A1090T	ENST00000458235	NM_000215.3	1090	Gcc/Acc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317461	1317461	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	204	827	0				ENST00000381566																																																																																	
MED12	9968	MSKCC	GRCh37	X	70343006	70343006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	188	371	1	ENST00000374080.3:c.1547G>A	p.Arg516His	p.R516H	ENST00000374080		516	cGt/cAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138521	11138521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	165	778	0	ENST00000344626.4:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000344626	NM_003072.3	1093	Cga/Tga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678509	88678509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	115	652	2	ENST00000360948.2:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000360948	NM_001012338.2	343	Cgg/Tgg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	215	529	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41568502	41568502	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	89	416	0	ENST00000263253.7:c.4453-1G>T		p.X1485_splice	ENST00000263253	NM_001429.3	1485																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	90	429	0	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	94	379	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
CASP8	841	MSKCC	GRCh37	2	202149946	202149946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	149	773	0	ENST00000358485.4:c.1387G>A	p.Ala463Thr	p.A463T	ENST00000358485	NM_001080125.1	463	Gcc/Acc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	69	319	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132552	11132552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	226	1078	1	ENST00000344626.4:c.2768C>T	p.Ala923Val	p.A923V	ENST00000344626	NM_003072.3	923	gCg/gTg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431010	181431010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	226	915	0	ENST00000325404.1:c.862G>A	p.Ala288Thr	p.A288T	ENST00000325404	NM_003106.3	288	Gcc/Acc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32187947	32187947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	232	997	1	ENST00000375023.3:c.1274C>T	p.Ser425Leu	p.S425L	ENST00000375023	NM_004557.3	425	tCg/tTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528707	8528707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	103	450	1	ENST00000356435.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000356435		142	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112175541	112175541	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	32	342	0	ENST00000257430.4:c.4251del	p.Ile1418Ter	p.I1418*	ENST00000257430	NM_000038.5	1417	aTt/at																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290231	15290231	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1334	261	1183	0	ENST00000263388.2:c.3404del	p.Gly1135ValfsTer137	p.G1135Vfs*137	ENST00000263388	NM_000435.2	1135	gGt/gt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	149	916	3	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578421	7578421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	235	922	0	ENST00000269305.4:c.509C>T	p.Thr170Met	p.T170M	ENST00000269305	NM_001126112.2	170	aCg/aTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68844112	68844112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	177	600	2	ENST00000261769.5:c.700G>A	p.Ala234Thr	p.A234T	ENST00000261769	NM_004360.3	234	Gct/Act																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271870	15271870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	228	1101	1	ENST00000263388.2:c.6569C>T	p.Ala2190Val	p.A2190V	ENST00000263388	NM_000435.2	2190	gCg/gTg																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841307	15841307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	178	362	1	ENST00000307771.7:c.1391G>A	p.Arg464His	p.R464H	ENST00000307771	NM_005089.3	464	cGt/cAt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	172	931	1	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38279324	38279324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	216	895	0	ENST00000425967.3:c.1165G>A	p.Val389Ile	p.V389I	ENST00000425967	NM_001174067.1	389	Gtt/Att																																																																														
NF2	4771	MSKCC	GRCh37	22	30074207	30074207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	117	630	0	ENST00000338641.4:c.1469C>T	p.Pro490Leu	p.P490L	ENST00000338641	NM_000268.3	490	cCg/cTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643617	52643617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199976998		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	155	590	2	ENST00000394830.3:c.2279G>A	p.Arg760His	p.R760H	ENST00000394830	NM_018313.4	760	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105676	27105678	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	104	474	3	ENST00000324856.7:c.5299_5301del	p.Glu1767del	p.E1767del	ENST00000324856	NM_006015.4	1763	GAA/-																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979986	7979987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	167	899	2	ENST00000319144.4:c.1350dup	p.Leu451AlafsTer27	p.L451Afs*27	ENST00000319144	NM_001139.2	450	-/G																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15273335	15273335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115582213		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	272	984	0	ENST00000263388.2:c.5854G>A	p.Val1952Met	p.V1952M	ENST00000263388	NM_000435.2	1952	Gtg/Atg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905974	50905974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	205	1109	0	ENST00000440232.2:c.946G>A	p.Asp316Asn	p.D316N	ENST00000440232	NM_002691.3	316	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	93	523	0	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	354	666	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643525	38643525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	153	675	0	ENST00000299084.4:c.995G>A	p.Arg332His	p.R332H	ENST00000299084	NM_152594.2	332	cGt/cAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	221	999	4	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	120	549	2	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1299	255	1114	5	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420273	49420273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	233	958	1	ENST00000301067.7:c.15476G>A	p.Arg5159Gln	p.R5159Q	ENST00000301067	NM_003482.3	5159	cGg/cAg																																																																														
B2M	567	MSKCC	GRCh37	15	45007752	45007753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	91	408	0	ENST00000558401.1:c.204dup	p.Val69SerfsTer21	p.V69Sfs*21	ENST00000558401	NM_004048.2	67	gaa/gAaa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226684	2226684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	190	989	0	ENST00000398665.3:c.4164G>T	p.Glu1388Asp	p.E1388D	ENST00000398665	NM_032482.2	1388	gaG/gaT																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81934267	81934267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	217	910	1	ENST00000359376.3:c.1244G>A	p.Arg415His	p.R415H	ENST00000359376	NM_002661.3	415	cGt/cAt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729964	41729964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	126	830	0	ENST00000242208.4:c.565G>A	p.Gly189Arg	p.G189R	ENST00000242208	NM_002192.2	189	Ggg/Agg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112323	115112324	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	56	266	1	ENST00000257566.3:c.1416_1417del	p.Leu473ProfsTer218	p.L473Pfs*218	ENST00000257566	NM_016569.3	472	gcGCtc/gctc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674227	117674227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	145	640	0	ENST00000368508.3:c.4247C>T	p.Ala1416Val	p.A1416V	ENST00000368508	NM_002944.2	1416	gCc/gTc																																																																														
ALK	238	MSKCC	GRCh37	2	29917736	29917736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150966028		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1157	72	898	0	ENST00000389048.3:c.932G>A	p.Arg311His	p.R311H	ENST00000389048	NM_004304.4	311	cGt/cAt																																																																														
SMO	6608	MSKCC	GRCh37	7	128845574	128845574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	184	691	0	ENST00000249373.3:c.871C>T	p.Arg291Ter	p.R291*	ENST00000249373	NM_005631.4	291	Cga/Tga																																																																														
CIC	23152	MSKCC	GRCh37	19	42794869	42794869	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	158	874	0	ENST00000575354.2:c.1953delC	p.Ala652ProfsTer76	p.A652Pfs*76	ENST00000575354	NM_015125.3	650	gCc/gc																																																																														
APC	324	MSKCC	GRCh37	5	112175211	112175211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	46	258	1	ENST00000257430.4:c.3920del	p.Ile1307LysfsTer14	p.I1307Kfs*14	ENST00000257430	NM_000038.5	1307	aTa/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21630862	21630862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202110155		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	129	709	1	ENST00000421138.2:c.742G>A	p.Ala248Thr	p.A248T	ENST00000421138		248	Gca/Aca																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411266	63411266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	192	544	0	ENST00000330258.3:c.1901G>A	p.Arg634His	p.R634H	ENST00000330258	NM_152424.3	634	cGt/cAt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1409	173	1227	0	ENST00000220592.5:c.1804_1806dup	p.Pro602dup	p.P602dup	ENST00000220592	NM_012154.3	602	-/CCC																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321399	1321399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	142	428	1	ENST00000381566.1:c.356C>A	p.Pro119His	p.P119H	ENST00000381566		119	cCc/cAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880926	134880926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	164	685	0	ENST00000398015.3:c.1489C>T	p.Arg497Trp	p.R497W	ENST00000398015	NM_004441.4	497	Cgg/Tgg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900206	101900206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	101	383	0	ENST00000374994.4:c.640G>T	p.Gly214Cys	p.G214C	ENST00000374994	NM_004612.2	214	Ggt/Tgt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222199	2222199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	275	1171	0	ENST00000398665.3:c.3031C>T	p.Arg1011Trp	p.R1011W	ENST00000398665	NM_032482.2	1011	Cgg/Tgg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375463	15375463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	231	1075	2	ENST00000263377.2:c.964C>T	p.Arg322Trp	p.R322W	ENST00000263377	NM_058243.2	322	Cgg/Tgg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128419995	128419995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	394	898	0	ENST00000265960.3:c.433C>T	p.Arg145Cys	p.R145C	ENST00000265960	NM_001006617.1	145	Cgc/Tgc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436549	110436549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	231	1092	0	ENST00000375856.3:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000375856	NM_003749.2	618	Gcg/Acg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916193	9916193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	51	626	0	ENST00000330684.3:c.2096C>A	p.Pro699His	p.P699H	ENST00000330684	NM_001134407.1	699	cCc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817741	3817741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	134	573	0	ENST00000262367.5:c.3230C>A	p.Pro1077His	p.P1077H	ENST00000262367	NM_004380.2	1077	cCt/cAt																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494606	2494606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	62	871	0	ENST00000355716.4:c.746A>G	p.Glu249Gly	p.E249G	ENST00000355716	NM_003820.2	249	gAa/gGa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775749	9775749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150205370		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	225	1036	0	ENST00000377346.4:c.292G>A	p.Val98Ile	p.V98I	ENST00000377346	NM_005026.3	98	Gtc/Atc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11294234	11294235	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	186	671	1	ENST00000361445.4:c.2296dup	p.Arg766ProfsTer24	p.R766Pfs*24	ENST00000361445	NM_004958.3	766	cga/cCga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260335	16260335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	144	612	0	ENST00000375759.3:c.7600C>A	p.Leu2534Met	p.L2534M	ENST00000375759	NM_015001.2	2534	Ctg/Atg																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797846	45797846	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138089183		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	190	869	0	ENST00000372115.3:c.883C>T	p.Arg295Cys	p.R295C	ENST00000372115	NM_001048171.1	295	Cgc/Tgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65323362	65323362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	144	610	1	ENST00000342505.4:c.1435G>A	p.Val479Ile	p.V479I	ENST00000342505	NM_002227.2	479	Gtc/Atc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120502048	120502048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	118	469	1	ENST00000256646.2:c.1993C>T	p.Arg665Cys	p.R665C	ENST00000256646	NM_024408.3	665	Cgc/Tgc																																																																														
FH	2271	MSKCC	GRCh37	1	241663754	241663754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	175	884	0	ENST00000366560.3:c.1373C>T	p.Ala458Val	p.A458V	ENST00000366560	NM_000143.3	458	gCt/gTt																																																																														
FH	2271	MSKCC	GRCh37	1	241675417	241675417	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	54	358	0	ENST00000366560.3:c.405T>G	p.His135Gln	p.H135Q	ENST00000366560	NM_000143.3	135	caT/caG																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100630	8100630	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	173	1180	0	ENST00000346208.3:c.604C>A	p.Arg202Ser	p.R202S	ENST00000346208		202	Cgt/Agt																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741571	17741571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	93	524	0	ENST00000250003.3:c.242T>C	p.Val81Ala	p.V81A	ENST00000250003	NM_002478.4	81	gTg/gCg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948208	71948208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1415	324	1321	0	ENST00000298229.2:c.2920G>C	p.Ala974Pro	p.A974P	ENST00000298229	NM_001567.3	974	Gcc/Ccc																																																																														
ATM	472	MSKCC	GRCh37	11	108143518	108143518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	120	519	0	ENST00000278616.4:c.3223A>G	p.Thr1075Ala	p.T1075A	ENST00000278616	NM_000051.3	1075	Aca/Gca																																																																														
ATM	472	MSKCC	GRCh37	11	108190758	108190758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	79	429	0	ENST00000278616.4:c.6425C>T	p.Thr2142Ile	p.T2142I	ENST00000278616	NM_000051.3	2142	aCa/aTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307295	118307295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	20	53	0	ENST00000534358.1:c.68G>A	p.Gly23Glu	p.G23E	ENST00000534358	NM_005933.3	23	gGg/gAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360547	118360547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	143	544	0	ENST00000534358.1:c.4520C>T	p.Pro1507Leu	p.P1507L	ENST00000534358	NM_005933.3	1507	cCt/cTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499668	18499669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	140	605	2	ENST00000266497.5:c.1526dup	p.Asn509LysfsTer4	p.N509Kfs*4	ENST00000266497		508	gta/gtAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431180	49431180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	193	893	1	ENST00000301067.7:c.9959C>T	p.Ala3320Val	p.A3320V	ENST00000301067	NM_003482.3	3320	gCc/gTc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484308	50484308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	184	696	3	ENST00000394963.4:c.1068G>T	p.Glu356Asp	p.E356D	ENST00000394963	NM_003076.4	356	gaG/gaT																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145109	58145109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	174	648	0	ENST00000257904.6:c.235G>A	p.Ala79Thr	p.A79T	ENST00000257904	NM_000075.3	79	Gcc/Acc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32890665	32890665	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	62	307	0	ENST00000380152.3:c.67+1G>A		p.X23_splice	ENST00000380152		23																																																																															
DICER1	23405	MSKCC	GRCh37	14	95557644	95557644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	125	564	0	ENST00000343455.3:c.5423T>C	p.Met1808Thr	p.M1808T	ENST00000343455	NM_177438.2	1808	aTg/aCg																																																																														
MGA	23269	MSKCC	GRCh37	15	42054381	42054381	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	99	366	1	ENST00000219905.7:c.7565A>G	p.Gln2522Arg	p.Q2522R	ENST00000219905	NM_001164273.1	2522	cAa/cGa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43767868	43767868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	152	646	1	ENST00000382044.4:c.980C>T	p.Pro327Leu	p.P327L	ENST00000382044	NM_001141980.1	327	cCt/cTt																																																																														
CD276	80381	MSKCC	GRCh37	15	73996269	73996269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	11	62	0	ENST00000318443.5:c.1003G>A	p.Glu335Lys	p.E335K	ENST00000318443	NM_001024736.1	335	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832684	3832684	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	118	504	0	ENST00000262367.5:c.1573+1G>A		p.X525_splice	ENST00000262367	NM_004380.2	525																																																																															
CTCF	10664	MSKCC	GRCh37	16	67662297	67662297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	114	538	1	ENST00000264010.4:c.1543C>T	p.Arg515Cys	p.R515C	ENST00000264010	NM_006565.3	515	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832571	72832571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	98	452	0	ENST00000268489.5:c.4010G>T	p.Ser1337Ile	p.S1337I	ENST00000268489	NM_006885.3	1337	aGc/aTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81925158	81925158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	141	658	0	ENST00000359376.3:c.949C>A	p.Pro317Thr	p.P317T	ENST00000359376	NM_002661.3	317	Ccc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7572962	7572963	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	123	527	0	ENST00000269305.4:c.1146dup	p.Leu383ThrfsTer9	p.L383Tfs*9	ENST00000269305	NM_001126112.2	382	-/A																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011114	12011114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	37	321	0	ENST00000353533.5:c.521G>A	p.Cys174Tyr	p.C174Y	ENST00000353533	NM_003010.3	174	tGt/tAt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011210	12011210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	36	303	0	ENST00000353533.5:c.617G>A	p.Gly206Asp	p.G206D	ENST00000353533	NM_003010.3	206	gGc/gAc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657589	37657589	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	152	659	0	ENST00000447079.4:c.2506A>G	p.Ile836Val	p.I836V	ENST00000447079	NM_015083.1	836	Atc/Gtc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682337	37682337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	151	750	2	ENST00000447079.4:c.3528G>T	p.Glu1176Asp	p.E1176D	ENST00000447079	NM_015083.1	1176	gaG/gaT																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40461396	40461396	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	126	703	0	ENST00000345506.4:c.2116T>G	p.Phe706Val	p.F706V	ENST00000345506	NM_003152.3	706	Ttt/Gtt																																																																														
EZH1	2145	MSKCC	GRCh37	17	40870634	40870634	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	144	584	0	ENST00000428826.2:c.769T>C	p.Tyr257His	p.Y257H	ENST00000428826		257	Tat/Cat																																																																														
SPOP	8405	MSKCC	GRCh37	17	47684666	47684666	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	176	601	0	ENST00000347630.2:c.783del	p.Lys262ArgfsTer24	p.K262Rfs*24	ENST00000347630	NM_001007230.1	261	ggG/gg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59857753	59857753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	83	360	0	ENST00000259008.2:c.1804G>T	p.Asp602Tyr	p.D602Y	ENST00000259008	NM_032043.2	602	Gat/Tat																																																																														
CD79B	974	MSKCC	GRCh37	17	62006802	62006802	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	175	890	0	ENST00000392795.3:c.586A>G	p.Thr196Ala	p.T196A	ENST00000392795	NM_001039933.1	196	Acc/Gcc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120480	70120480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1377	241	1182	0	ENST00000245479.2:c.1486del	p.Gln496SerfsTer27	p.Q496Sfs*27	ENST00000245479	NM_000346.3	494	agC/ag																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45377665	45377666	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	74	247	1	ENST00000262160.6:c.763dup	p.Ser255PhefsTer4	p.S255Ffs*4	ENST00000262160	NM_005901.5	255	tcc/tTcc																																																																														
BCL2	596	MSKCC	GRCh37	18	60795965	60795965	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	135	647	0	ENST00000333681.4:c.613A>C	p.Ser205Arg	p.S205R	ENST00000333681		205	Agc/Cgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210517	5210517	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	158	815	0	ENST00000357368.4:c.5450A>G	p.Gln1817Arg	p.Q1817R	ENST00000357368	NM_002850.3	1817	cAg/cGg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5258070	5258070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	138	721	0	ENST00000357368.4:c.664G>A	p.Ala222Thr	p.A222T	ENST00000357368	NM_002850.3	222	Gcc/Acc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10286284	10286284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	183	666	0	ENST00000340748.4:c.532C>T	p.Arg178Trp	p.R178W	ENST00000340748		178	Cgg/Tgg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11022882	11022882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1316	261	1167	1	ENST00000327064.4:c.581G>A	p.Gly194Asp	p.G194D	ENST00000327064	NM_199141.1	194	gGc/gAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121109	11121109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	224	917	0	ENST00000344626.4:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000344626	NM_003072.3	726	Cgt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291804	15291804	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	208	1156	2	ENST00000263388.2:c.2962T>C	p.Cys988Arg	p.C988R	ENST00000263388	NM_000435.2	988	Tgc/Cgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211930	36211930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1409	298	1230	2	ENST00000222270.7:c.1681C>T	p.Pro561Ser	p.P561S	ENST00000222270	NM_014727.1	561	Cct/Tct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224174	36224174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	200	883	0	ENST00000222270.7:c.6724G>A	p.Val2242Met	p.V2242M	ENST00000222270	NM_014727.1	2242	Gtg/Atg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52723490	52723490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	105	514	0	ENST00000322088.6:c.1351C>T	p.Leu451Phe	p.L451F	ENST00000322088	NM_014225.5	451	Ctt/Ttt																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309720	30309720	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	162	731	0	ENST00000307677.4:c.302A>G	p.Tyr101Cys	p.Y101C	ENST00000307677	NM_138578.1	101	tAc/tGc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31369202	31369202	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	162	670	1	ENST00000328111.2:c.186T>G	p.Ser62Arg	p.S62R	ENST00000328111	NM_006892.3	62	agT/agG																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264199	46264199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	107	438	0	ENST00000371998.3:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000371998		416	Gcc/Acc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513315	44513315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	175	934	0	ENST00000291552.4:c.620G>T	p.Arg207Ile	p.R207I	ENST00000291552	NM_006758.2	207	aGa/aTa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130433	29130434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs876661156		P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	170	724	0	ENST00000328354.6:c.276dup	p.Trp93LeufsTer15	p.W93Lfs*15	ENST00000328354	NM_007194.3	92	-/C																																																																														
NF2	4771	MSKCC	GRCh37	22	30070891	30070891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	168	901	0	ENST00000338641.4:c.1407G>T	p.Lys469Asn	p.K469N	ENST00000338641	NM_000268.3	469	aaG/aaT																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458474	12458474	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	198	807	0	ENST00000287820.6:c.1091A>C	p.Lys364Thr	p.K364T	ENST00000287820	NM_015869.4	364	aAa/aCa																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114684	73114684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	112	565	0	ENST00000356692.5:c.1065G>T	p.Glu355Asp	p.E355D	ENST00000356692		355	gaG/gaT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445112	89445112	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	71	367	0	ENST00000336596.2:c.1431+1G>A		p.X477_splice	ENST00000336596	NM_005233.5	477																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138456730	138456730	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	67	405	0	ENST00000289153.2:c.622-2A>G		p.X208_splice	ENST00000289153	NM_006219.2	208																																																																															
ATR	545	MSKCC	GRCh37	3	142212117	142212117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	93	543	1	ENST00000350721.4:c.5935G>A	p.Gly1979Ser	p.G1979S	ENST00000350721	NM_001184.3	1979	Ggt/Agt																																																																														
ATR	545	MSKCC	GRCh37	3	142232468	142232468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	78	408	0	ENST00000350721.4:c.4516C>A	p.Leu1506Ile	p.L1506I	ENST00000350721	NM_001184.3	1506	Ctt/Att																																																																														
ATR	545	MSKCC	GRCh37	3	142281817	142281818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	104	552	0	ENST00000350721.4:c.426dup	p.Gly143TrpfsTer12	p.G143Wfs*12	ENST00000350721	NM_001184.3	142	-/T																																																																														
BCL6	604	MSKCC	GRCh37	3	187442765	187442765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	119	645	1	ENST00000232014.4:c.1941C>A	p.Ser647Arg	p.S647R	ENST00000232014	NM_001130845.1	647	agC/agA																																																																														
TET2	54790	MSKCC	GRCh37	4	106156073	106156073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	97	351	0	ENST00000380013.4:c.974A>G	p.Gln325Arg	p.Q325R	ENST00000380013	NM_001127208.2	325	cAa/cGa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950345	38950345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	122	475	0	ENST00000357387.3:c.3605G>T	p.Arg1202Met	p.R1202M	ENST00000357387	NM_152756.3	1202	aGg/aTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593379	67593379	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	89	336	0	ENST00000274335.5:c.2125T>C	p.Ser709Pro	p.S709P	ENST00000274335		709	Tcc/Ccc																																																																														
MSH3	4437	MSKCC	GRCh37	5	80057481	80057481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	50	267	0	ENST00000265081.6:c.1880G>A	p.Ser627Asn	p.S627N	ENST00000265081	NM_002439.4	627	aGc/aAc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923342	131923342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	54	282	0	ENST00000265335.6:c.845T>C	p.Met282Thr	p.M282T	ENST00000265335		282	aTg/aCg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720932	176720932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	64	609	0	ENST00000439151.2:c.6563A>G	p.Glu2188Gly	p.E2188G	ENST00000439151	NM_022455.4	2188	gAa/gGa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180049785	180049785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	225	1011	0	ENST00000261937.6:c.1603G>A	p.Val535Met	p.V535M	ENST00000261937	NM_182925.4	535	Gtg/Atg																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402744	20402744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	87	487	0	ENST00000346618.3:c.281C>T	p.Thr94Ile	p.T94I	ENST00000346618	NM_001949.4	94	aCc/aTc																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839999	27839999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	66	579	0	ENST00000328488.2:c.95C>T	p.Ala32Val	p.A32V	ENST00000328488	NM_003533.2	32	gCc/gTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679701	30679701	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	187	734	0	ENST00000376406.3:c.2018A>T	p.Glu673Val	p.E673V	ENST00000376406	NM_014641.2	673	gAg/gTg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287463	33287463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	147	661	0	ENST00000374542.5:c.1634C>A	p.Ala545Asp	p.A545D	ENST00000374542	NM_001141970.1	545	gCt/gAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708997	117708997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	142	589	0	ENST00000368508.3:c.1960C>T	p.Pro654Ser	p.P654S	ENST00000368508	NM_002944.2	654	Cca/Tca																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005597	150005597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	97	348	0	ENST00000253339.5:c.628G>T	p.Asp210Tyr	p.D210Y	ENST00000253339		210	Gat/Tat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528772	157528772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	164	710	0	ENST00000346085.5:c.6497G>T	p.Gly2166Val	p.G2166V	ENST00000346085	NM_020732.3	2166	gGg/gTg																																																																														
PARK2	5071	MSKCC	GRCh37	6	161807840	161807840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	116	429	0	ENST00000366898.1:c.1153G>A	p.Gly385Arg	p.G385R	ENST00000366898	NM_004562.2	385	Gga/Aga																																																																														
BRAF	673	MSKCC	GRCh37	7	140434564	140434564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	73	232	0	ENST00000288602.6:c.2134G>A	p.Ala712Thr	p.A712T	ENST00000288602	NM_004333.4	712	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151833939	151833939	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	129	614	0	ENST00000262189.6:c.14714A>G	p.Asn4905Ser	p.N4905S	ENST00000262189	NM_170606.2	4905	aAc/aGc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285890	38285890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	131	733	0	ENST00000425967.3:c.521C>T	p.Thr174Ile	p.T174I	ENST00000425967	NM_001174067.1	174	aCa/aTa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372396	55372396	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	255	1075	1	ENST00000297316.4:c.1086A>T	p.Glu362Asp	p.E362D	ENST00000297316	NM_022454.3	362	gaA/gaT																																																																														
AGO2	27161	MSKCC	GRCh37	8	141572612	141572612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	184	824	0	ENST00000220592.5:c.458G>A	p.Ser153Asn	p.S153N	ENST00000220592	NM_012154.3	153	aGc/aAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229404	98229404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	64	301	2	ENST00000331920.6:c.2554C>A	p.Leu852Ile	p.L852I	ENST00000331920	NM_000264.3	852	Ctt/Att																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128268619	128268619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	485	1032	1	ENST00000265960.3:c.1036G>A	p.Ala346Thr	p.A346T	ENST00000265960	NM_001006617.1	346	Gca/Aca																																																																														
MED12	9968	MSKCC	GRCh37	X	70341566	70341566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	233	435	0	ENST00000374080.3:c.1001C>A	p.Pro334His	p.P334H	ENST00000374080		334	cCt/cAt																																																																														
MED12	9968	MSKCC	GRCh37	X	70356751	70356751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	183	479	2	ENST00000374080.3:c.5423G>T	p.Arg1808Leu	p.R1808L	ENST00000374080		1808	cGg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	125	492	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	191	565	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0039590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	59	330	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597433	52597433	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199643728		P-0039590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	106	547	1	ENST00000394830.3:c.3877G>A	p.Glu1293Lys	p.E1293K	ENST00000394830	NM_018313.4	1293	Gag/Aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440660	56440660	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	175	761	0	ENST00000407977.2:c.558del	p.Ile186MetfsTer3	p.I186Mfs*3	ENST00000407977		186	atT/at																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851694	134851694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	74	670	0	ENST00000398015.3:c.1100G>A	p.Arg367His	p.R367H	ENST00000398015	NM_004441.4	367	cGc/cAc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525054	9525054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	84	543	0	ENST00000353224.5:c.1831G>A	p.Ala611Thr	p.A611T	ENST00000353224	NM_177990.2	611	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1271256	1271256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	27	520	0	ENST00000310581.5:c.2446C>T	p.His816Tyr	p.H816Y	ENST00000310581	NM_198253.2	816	Cac/Tac																																																																														
MET	4233	MSKCC	GRCh37	7	116411889	116411904	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTCTGTTTTAAGAT	CTCTCTGTTTTAAGAT	GAA			P-0039591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	274	1021	1	ENST00000397752.3:c.2888-14_2889delinsGAA		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249015	55249016	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGT			P-0039598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	247	582	0	ENST00000275493.2:c.2313_2314insGGT	p.Asn771_Pro772insGly	p.N771_P772insG	ENST00000275493	NM_005228.3	771	-/GGT																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205368	38205368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	68	777	0	ENST00000317025.8:c.322C>T	p.Pro108Ser	p.P108S	ENST00000317025	NM_023034.1	108	Ccc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112177091	112177091	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	134	413	0	ENST00000257430.4:c.5803del	p.Gln1935SerfsTer35	p.Q1935Sfs*35	ENST00000257430	NM_000038.5	1934	Ccc/cc																																																																														
APC	324	MSKCC	GRCh37	5	112174783	112174783	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	71	248	0	ENST00000257430.4:c.3495del	p.Lys1165AsnfsTer17	p.K1165Nfs*17	ENST00000257430	NM_000038.5	1164	atA/at																																																																														
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	404	822	9	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	196	442	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	135	424	0	ENST00000371953.3:c.380G>A	p.Gly127Glu	p.G127E	ENST00000371953	NM_000314.4	127	gGa/gAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	83	307	0	ENST00000263967.3:c.1070G>T	p.Arg357Leu	p.R357L	ENST00000263967	NM_006218.2	357	cGa/cTa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	472	1058	3	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753385	42753385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	111	908	4	ENST00000222329.4:c.879delG	p.Ser295AlafsTer16	p.S295Afs*16	ENST00000222329	NM_006494.2	293	ggG/gg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716029	243716029	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	98	446	0	ENST00000263826.5:c.1163+2T>C		p.X388_splice	ENST00000263826	NM_005465.4	388																																																																															
SHOC2	8036	MSKCC	GRCh37	10	112724726	112724726	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	156	467	0	ENST00000369452.4:c.610A>T	p.Ile204Leu	p.I204L	ENST00000369452	NM_007373.3	204	Ata/Tta																																																																														
HRAS	3265	MSKCC	GRCh37	11	533461	533461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	277	861	0	ENST00000311189.7:c.442A>G	p.Thr148Ala	p.T148A	ENST00000311189		148	Acc/Gcc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948732	71948732	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	271	907	1	ENST00000298229.2:c.3448del	p.Leu1150TrpfsTer52	p.L1150Wfs*52	ENST00000298229	NM_001567.3	1148	ggC/gg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831411	72831411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	144	465	0	ENST00000268489.5:c.5170C>T	p.Gln1724Ter	p.Q1724*	ENST00000268489	NM_006885.3	1724	Cag/Tag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59924475	59924475	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	102	279	0	ENST00000259008.2:c.614T>G	p.Phe205Cys	p.F205C	ENST00000259008	NM_032043.2	205	tTt/tGt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148543636	148543636	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	64	393	0	ENST00000320356.2:c.172C>T	p.Gln58Ter	p.Q58*	ENST00000320356	NM_004456.4	58	Caa/Taa																																																																														
MYC	4609	MSKCC	GRCh37	8	128753073	128753073	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	112	438	0	ENST00000377970.2:c.1239del	p.Ala414ProfsTer29	p.A414Pfs*29	ENST00000377970	NM_002467.4	412	Aaa/aa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589168	67589168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	44	410	0	ENST00000274335.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000274335		386	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	79	432	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	137	935	1	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424695	49424695	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	95	814	2	ENST00000301067.7:c.13652T>A	p.Leu4551Ter	p.L4551*	ENST00000301067	NM_003482.3	4551	tTg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578448	7578449	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	276	1053	0	ENST00000269305.4:c.481_482del	p.Ala161HisfsTer19	p.A161Hfs*19	ENST00000269305	NM_001126112.2	161	GCc/c																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252723	10252723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	85	921	0	ENST00000340748.4:c.3242A>G	p.Asn1081Ser	p.N1081S	ENST00000340748		1081	aAc/aGc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678751	52678751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	38	426	0	ENST00000394830.3:c.868C>A	p.His290Asn	p.H290N	ENST00000394830	NM_018313.4	290	Cat/Aat																																																																														
RASA1	5921	MSKCC	GRCh37	5	86667956	86667957	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	38	365	1	ENST00000274376.6:c.1721dup	p.Phe575IlefsTer8	p.F575Ifs*8	ENST00000274376	NM_002890.2	574	gca/gCca																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683755	162683755	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	52	528	0	ENST00000366898.1:c.214A>G	p.Arg72Gly	p.R72G	ENST00000366898	NM_004562.2	72	Aga/Gga																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0039613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	246	583	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434506	110434506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	336	854	1	ENST00000375856.3:c.3895G>A	p.Val1299Ile	p.V1299I	ENST00000375856	NM_003749.2	1299	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	405	798	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532577	63532577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	306	958	0	ENST00000307078.5:c.2002G>A	p.Gly668Arg	p.G668R	ENST00000307078	NM_004655.3	668	Ggg/Agg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42861470	42861470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	430	695	0	ENST00000398585.3:c.400G>A	p.Gly134Arg	p.G134R	ENST00000398585	NM_001135099.1	134	Gga/Aga																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940118	49940118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	346	877	2	ENST00000296474.3:c.925C>T	p.Arg309Trp	p.R309W	ENST00000296474	NM_002447.2	309	Cgg/Tgg																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1920142	1920142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	178	932	0	ENST00000382891.5:c.1202G>A	p.Arg401Gln	p.R401Q	ENST00000382891	NM_133335.3	401	cGg/cAg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983044	201983044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	300	1145	2	ENST00000359651.3:c.893G>C	p.Arg298Pro	p.R298P	ENST00000359651		298	cGg/cCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428005	49428005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	114	942	0	ENST00000301067.7:c.10585G>C	p.Glu3529Gln	p.E3529Q	ENST00000301067	NM_003482.3	3529	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428074	49428074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	115	841	0	ENST00000301067.7:c.10516G>C	p.Asp3506His	p.D3506H	ENST00000301067	NM_003482.3	3506	Gac/Cac																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647873	3647873	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	108	1238	0	ENST00000294008.3:c.1291G>C	p.Glu431Gln	p.E431Q	ENST00000294008	NM_032444.2	431	Gag/Cag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916269	9916269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	99	586	0	ENST00000330684.3:c.2020C>A	p.His674Asn	p.H674N	ENST00000330684	NM_001134407.1	674	Cat/Aat																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374892	45374893	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0039626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	111	728	3	ENST00000262160.6:c.950_951delinsTT	p.Ser317Phe	p.S317F	ENST00000262160	NM_005901.5	317	tCC/tTT																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164509	36164509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	98	703	0	ENST00000300305.3:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000300305		456	Gag/Aag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259439	89259439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	85	730	1	ENST00000336596.2:c.583G>C	p.Val195Leu	p.V195L	ENST00000336596	NM_005233.5	195	Gtg/Ctg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	141	736	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	98	499	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652266	36652267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	307	821	0	ENST00000244741.5:c.392dup	p.Gly132ArgfsTer65	p.G132Rfs*65	ENST00000244741	NM_000389.4	130	tcc/tCcc																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38146156	38146156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	172	1001	0	ENST00000317025.8:c.3350G>A	p.Arg1117Lys	p.R1117K	ENST00000317025	NM_023034.1	1117	aGa/aAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5022050	5022050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	31	573	0	ENST00000381652.3:c.63G>C	p.Gln21His	p.Q21H	ENST00000381652	NM_004972.3	21	caG/caC																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727522	66727522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	168	719	1	ENST00000307102.5:c.238G>A	p.Gly80Ser	p.G80S	ENST00000307102	NM_002755.3	80	Ggt/Agt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952457	17952457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1766	226	1032	0	ENST00000458235.1:c.976C>A	p.Gln326Lys	p.Q326K	ENST00000458235	NM_000215.3	326	Cag/Aag																																																																														
CD274	29126	MSKCC	GRCh37	9	5457283	5457283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	66	398	2	ENST00000381577.3:c.257G>A	p.Arg86Gln	p.R86Q	ENST00000381577	NM_014143.3	86	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0039643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	818	751	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27777972	27777972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	99	385	0	ENST00000369163.2:c.121C>T	p.Arg41Cys	p.R41C	ENST00000369163	NM_003536.2	41	Cgc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	49047494	49047495	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0039643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	92	248	0	ENST00000267163.4:c.2490-1_2490del		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10277294	10277294	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	684	795	0	ENST00000340748.4:c.823G>C	p.Asp275His	p.D275H	ENST00000340748		275	Gac/Cac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228985	36228985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1347	239	807	0	ENST00000222270.7:c.7765C>G	p.Leu2589Val	p.L2589V	ENST00000222270	NM_014727.1	2589	Ctg/Gtg																																																																														
CIC	23152	MSKCC	GRCh37	19	42792124	42792124	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	797	520	0	ENST00000575354.2:c.931+1del		p.G310fs	ENST00000575354	NM_015125.3	310	Ggg/gg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319388	62319388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1315	284	968	0	ENST00000508582.2:c.1652C>G	p.Ser551Cys	p.S551C	ENST00000508582		551	tCc/tGc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818153	32818153	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	244	714	1	ENST00000354258.4:c.1372A>T	p.Lys458Ter	p.K458*	ENST00000354258	NM_000593.5	458	Aag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	73	371	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578519	7578520	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGTTGGCAA			P-0039646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	114	924	0	ENST00000269305.4:c.402_410dup	p.Cys135_Leu137dup	p.C135_L137dup	ENST00000269305	NM_001126112.2	135	ctg/ctTTGCCAACTg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617739	39617739	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	18	365	0	ENST00000262039.4:c.1923A>T	p.Leu641Phe	p.L641F	ENST00000262039	NM_002647.2	641	ttA/ttT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	385	444	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923703	39923703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	182	891	0	ENST00000378444.4:c.3388C>A	p.Leu1130Ile	p.L1130I	ENST00000378444	NM_001123385.1	1130	Ctc/Atc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99491840	99491840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	207	556	2	ENST00000268035.6:c.3625G>T	p.Ala1209Ser	p.A1209S	ENST00000268035	NM_000875.3	1209	Gcc/Tcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29508461	29508461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	136	388	0	ENST00000358273.4:c.608C>G	p.Ala203Gly	p.A203G	ENST00000358273	NM_001042492.2	203	gCc/gGc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618832	37618832	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	263	656	0	ENST00000447079.4:c.508A>T	p.Ser170Cys	p.S170C	ENST00000447079	NM_015083.1	170	Agc/Tgc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761399	59761399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	104	479	0	ENST00000259008.2:c.3008C>T	p.Ser1003Leu	p.S1003L	ENST00000259008	NM_032043.2	1003	tCa/tTa																																																																														
ALK	238	MSKCC	GRCh37	2	29606604	29606604	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	221	395	0	ENST00000389048.3:c.1276A>T	p.Ser426Cys	p.S426C	ENST00000389048	NM_004304.4	426	Agt/Tgt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715735	30715735	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs144766594		P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	199	328	2	ENST00000359013.4:c.1468G>T	p.Gly490Ter	p.G490*	ENST00000359013	NM_001024847.2	490	Gga/Tga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231287	98231287	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	260	795	1	ENST00000331920.6:c.1996A>T	p.Thr666Ser	p.T666S	ENST00000331920	NM_000264.3	666	Acg/Tcg																																																																														
XIAP	331	MSKCC	GRCh37	X	123025086	123025086	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0039651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	162	461	0	ENST00000355640.3:c.978-2A>T		p.X326_splice	ENST00000355640		326																																																																															
FAM46C	54855	MSKCC	GRCh37	1	118165942	118165942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	12	369	0	ENST00000369448.3:c.452G>A	p.Arg151His	p.R151H	ENST00000369448	NM_017709.3	151	cGc/cAc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036170-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	123	570	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																														
JAK1	3716	MSKCC	GRCh37	1	65321305	65321305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036170-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	212	719	1	ENST00000342505.4:c.1535C>T	p.Ser512Leu	p.S512L	ENST00000342505	NM_002227.2	512	tCg/tTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941838	44941838	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036170-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			98	115	210	0	ENST00000377967.4:c.3163del	p.Ser1055ValfsTer28	p.S1055Vfs*28	ENST00000377967	NM_021140.2	1054	agA/ag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106089	27106090	+	stop_gained	Nonsense_Mutation	DNP	TG	TG	AT			P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	89	406	2	ENST00000324856.7:c.5700_5701delinsAT	p.Asp1900_Gly1901delinsGluTer	p.D1900_G1901delinsE*	ENST00000324856	NM_006015.4	1900	gaTGga/gaATga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	299	417	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633486	3633486	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181782315		P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	318	576	2	ENST00000294008.3:c.4765C>T	p.Arg1589Cys	p.R1589C	ENST00000294008	NM_032444.2	1589	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	317	478	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	142	391	0	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	58	252	2	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0037447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	55	197	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	111	515	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	31	229	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	145	466	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374935	45374935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	149	477	0	ENST00000262160.6:c.908C>G	p.Thr303Arg	p.T303R	ENST00000262160	NM_005901.5	303	aCa/aGa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249460	153249460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	151	481	1	ENST00000281708.4:c.1318G>A	p.Asp440Asn	p.D440N	ENST00000281708	NM_033632.3	440	Gat/Aat																																																																														
APC	324	MSKCC	GRCh37	5	112174814	112174814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	25	229	0	ENST00000257430.4:c.3523C>T	p.Gln1175Ter	p.Q1175*	ENST00000257430	NM_000038.5	1175	Cag/Tag																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793269	33793269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	53	109	0	ENST00000498907.2:c.52C>T	p.His18Tyr	p.H18Y	ENST00000498907	NM_004364.3	18	Cac/Tac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120502102	120502102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	32	276	0	ENST00000256646.2:c.1939G>C	p.Asp647His	p.D647H	ENST00000256646	NM_024408.3	647	Gat/Cat																																																																														
SESN3	143686	MSKCC	GRCh37	11	94908721	94908721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	37	482	0	ENST00000536441.1:c.1333G>A	p.Glu445Lys	p.E445K	ENST00000536441	NM_144665.3	445	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342446	118342446	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	39	151	0	ENST00000534358.1:c.572C>G	p.Ser191Ter	p.S191*	ENST00000534358	NM_005933.3	191	tCa/tGa																																																																														
RB1	5925	MSKCC	GRCh37	13	48934254	48934254	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	85	344	0	ENST00000267163.4:c.709G>T	p.Glu237Ter	p.E237*	ENST00000267163	NM_000321.2	237	Gaa/Taa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30047529	30047529	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	16	320	0	ENST00000331968.5:c.2472G>C	p.Met824Ile	p.M824I	ENST00000331968	NM_002742.2	824	atG/atC																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942068	81942068	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	28	353	0	ENST00000359376.3:c.1605G>C	p.Lys535Asn	p.K535N	ENST00000359376	NM_002661.3	535	aaG/aaC																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942088	81942088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	35	366	0	ENST00000359376.3:c.1625G>C	p.Ser542Thr	p.S542T	ENST00000359376	NM_002661.3	542	aGt/aCt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16090003	16090003	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	48	162	0	ENST00000268712.3:c.109-2A>G		p.X37_splice	ENST00000268712	NM_006311.3	37																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56809896	56809896	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	81	373	0	ENST00000337432.4:c.1017T>G	p.Phe339Leu	p.F339L	ENST00000337432	NM_058216.2	339	ttT/ttG																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118872	70118872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	31	331	0	ENST00000245479.2:c.444G>C	p.Glu148Asp	p.E148D	ENST00000245479	NM_000346.3	148	gaG/gaC																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118878	70118878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	31	352	0	ENST00000245479.2:c.450G>C	p.Glu150Asp	p.E150D	ENST00000245479	NM_000346.3	150	gaG/gaC																																																																														
MALT1	10892	MSKCC	GRCh37	18	56402488	56402488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	16	193	0	ENST00000348428.3:c.1530C>G	p.Ile510Met	p.I510M	ENST00000348428	NM_006785.3	510	atC/atG																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302346	15302346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	22	621	1	ENST00000263388.2:c.925G>A	p.Glu309Lys	p.E309K	ENST00000263388	NM_000435.2	309	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916755	178916755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	41	271	0	ENST00000263967.3:c.142G>A	p.Glu48Lys	p.E48K	ENST00000263967	NM_006218.2	48	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55974025	55974025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	20	326	0	ENST00000263923.4:c.1291C>T	p.Pro431Ser	p.P431S	ENST00000263923	NM_002253.2	431	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	68	114	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38950121	38950121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	34	373	0	ENST00000357387.3:c.3829C>G	p.Leu1277Val	p.L1277V	ENST00000357387	NM_152756.3	1277	Ctg/Gtg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753376	57753376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	14	342	0	ENST00000274289.3:c.748G>A	p.Glu250Lys	p.E250K	ENST00000274289	NM_006622.3	250	Gaa/Aaa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80171619	80171619	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	16	306	0	ENST00000265081.6:c.3352G>C	p.Asp1118His	p.D1118H	ENST00000265081	NM_002439.4	1118	Gac/Cac																																																																														
APC	324	MSKCC	GRCh37	5	112178922	112178922	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	39	210	0	ENST00000257430.4:c.7631C>A	p.Ser2544Ter	p.S2544*	ENST00000257430	NM_000038.5	2544	tCa/tAa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	36	255	0	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	36	274	0	ENST00000244661.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000244661	NM_003537.3	74	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641147	117641147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	49	447	1	ENST00000368508.3:c.5824C>T	p.Arg1942Trp	p.R1942W	ENST00000368508	NM_002944.2	1942	Cgg/Tgg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001166	150001167	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	18	384	0	ENST00000253339.5:c.2437dup	p.Thr813AsnfsTer5	p.T813Nfs*5	ENST00000253339		813	acc/aAcc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001595	150001595	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	45	279	0	ENST00000253339.5:c.2011-2A>G		p.X671_splice	ENST00000253339		671																																																																															
XIAP	331	MSKCC	GRCh37	X	123034517	123034517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	24	291	0	ENST00000355640.3:c.1274A>G	p.Glu425Gly	p.E425G	ENST00000355640		425	gAg/gGg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732533	74732533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	16	89	0	ENST00000359995.5:c.376C>T	p.Arg126Cys	p.R126C	ENST00000359995	NM_001195427.1	126	Cgc/Tgc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81941320	81941320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	41	424	0	ENST00000359376.3:c.1498G>A	p.Asp500Asn	p.D500N	ENST00000359376	NM_002661.3	500	Gat/Aat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	76	282	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	85	132	0				ENST00000310581	NM_198253.2																																																																																
MET	4233	MSKCC	GRCh37	7	116412022	116412022	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	221	633	1	ENST00000397752.3:c.3007T>A	p.Tyr1003Asn	p.Y1003N	ENST00000397752	NM_000245.2	1003	Tac/Aac																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72897386	72897386	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	30	270	0	ENST00000325599.8:c.106T>G	p.Ser36Ala	p.S36A	ENST00000325599	NM_018130.2	36	Tct/Gct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	100	467	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	145	357	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871800	12871800	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	51	120	0	ENST00000228872.4:c.517A>C	p.Asn173His	p.N173H	ENST00000228872	NM_004064.3	173	Aat/Cat																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640004	3640004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	34	580	0	ENST00000294008.3:c.3635C>A	p.Ala1212Asp	p.A1212D	ENST00000294008	NM_032444.2	1212	gCt/gAt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89813048	89813048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	35	415	0	ENST00000389301.3:c.3457G>A	p.Asp1153Asn	p.D1153N	ENST00000389301	NM_000135.2	1153	Gac/Aac																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716329	52716329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	136	435	0	ENST00000322088.6:c.773G>T	p.Arg258Leu	p.R258L	ENST00000322088	NM_014225.5	258	cGc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	53	326	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	40	236	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577069	7577069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55819519		P-0037731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	8	742	0	ENST00000269305.4:c.869G>A	p.Arg290His	p.R290H	ENST00000269305	NM_001126112.2	290	cGc/cAc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1956899	1956899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	14	714	1	ENST00000382891.5:c.2350C>T	p.Arg784Trp	p.R784W	ENST00000382891	NM_133335.3	784	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481649	56481649	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	69	703	0	ENST00000267101.3:c.684T>G	p.His228Gln	p.H228Q	ENST00000267101	NM_001982.3	228	caT/caG																																																																														
UPF1	5976	MSKCC	GRCh37	19	18964144	18964144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	18	449	0	ENST00000262803.5:c.1141A>G	p.Ile381Val	p.I381V	ENST00000262803	NM_002911.3	381	Atc/Gtc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39746905	39746905	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	29	349	0	ENST00000361337.2:c.1919T>C	p.Phe640Ser	p.F640S	ENST00000361337	NM_003286.2	640	tTt/tCt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	167	665	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	75	318	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350862	89350862	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	170	833	0	ENST00000301030.4:c.2088del	p.Glu697LysfsTer7	p.E697Kfs*7	ENST00000301030	NM_001256183.1	696	aaA/aa																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	209	771	10	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258485	16258485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	138	617	0	ENST00000375759.3:c.5750G>A	p.Arg1917His	p.R1917H	ENST00000375759	NM_015001.2	1917	cGc/cAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	233	424	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780711	9780711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	51	609	0	ENST00000377346.4:c.1513G>A	p.Glu505Lys	p.E505K	ENST00000377346	NM_005026.3	505	Gag/Aag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435128	110435129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs772322568		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	146	622	0	ENST00000375856.3:c.3272dup	p.Lys1092GlufsTer233	p.K1092Efs*233	ENST00000375856	NM_003749.2	1091	ccg/ccCg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	113	423	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846336	156846336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	185	592	1	ENST00000524377.1:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000524377	NM_002529.3	593	Cgg/Tgg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224538	53224538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	194	337	1	ENST00000375401.3:c.3175C>T	p.Arg1059Trp	p.R1059W	ENST00000375401	NM_004187.3	1059	Cgg/Tgg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974899	15974899	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	102	480	0	ENST00000268712.3:c.3976C>T	p.Arg1326Ter	p.R1326*	ENST00000268712	NM_006311.3	1326	Cga/Tga																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	130	600	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
ATRX	546	MSKCC	GRCh37	X	76812945	76812947	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	89	275	2	ENST00000373344.5:c.6674_6676del	p.Lys2225del	p.K2225del	ENST00000373344	NM_000489.3	2225	aAGAgg/agg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155325	185155325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	171	557	0	ENST00000265026.3:c.566C>T	p.Ala189Val	p.A189V	ENST00000265026	NM_004721.4	189	gCg/gTg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	156	637	1	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622516	158622516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	115	517	0	ENST00000263640.3:c.983G>T	p.Gly328Val	p.G328V	ENST00000263640	NM_001105.4	328	gGg/gTg																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494324	2494324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143033733		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	170	645	0	ENST00000355716.4:c.715G>A	p.Val239Ile	p.V239I	ENST00000355716	NM_003820.2	239	Gtc/Atc																																																																														
BLM	641	MSKCC	GRCh37	15	91347446	91347446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	133	412	0	ENST00000355112.3:c.3608C>T	p.Ala1203Val	p.A1203V	ENST00000355112	NM_000057.2	1203	gCg/gTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	130	609	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	73	712	0	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255141	16255142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	124	544	1	ENST00000375759.3:c.2417_2418dupGA	p.Arg807AspfsTer3	p.R807Dfs*3	ENST00000375759	NM_015001.2	802	-/GA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	194	648	0	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261291	16261292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	156	583	0	ENST00000375759.3:c.8558dup	p.Ser2854ValfsTer6	p.S2854Vfs*6	ENST00000375759	NM_015001.2	2852	-/A																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834203	156834203	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	173	713	0	ENST00000524377.1:c.274delG	p.Glu92SerfsTer2	p.E92Sfs*2	ENST00000524377	NM_002529.3	90	ctG/ct																																																																														
GATA3	2625	MSKCC	GRCh37	10	8105983	8105983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	132	455	0	ENST00000346208.3:c.803C>A	p.Ala268Glu	p.A268E	ENST00000346208		268	gCa/gAa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497657	125497657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	96	441	0	ENST00000428830.2:c.221G>T	p.Arg74Met	p.R74M	ENST00000428830	NM_001114121.2	74	aGg/aTg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606151	81606151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	135	539	0	ENST00000298171.2:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000298171	NM_000369.2	274	cGg/cAg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813705	50813705	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	83	646	0	ENST00000398568.2:c.1259T>C	p.Leu420Pro	p.L420P	ENST00000398568	NM_001042412.1	420	cTc/cCc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829272	72829272	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	189	717	0	ENST00000268489.5:c.7309del	p.Ser2437ValfsTer91	p.S2437Vfs*91	ENST00000268489	NM_006885.3	2437	Agt/gt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10286250	10286250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	185	594	0	ENST00000340748.4:c.566C>T	p.Ser189Leu	p.S189L	ENST00000340748		189	tCg/tTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224692	36224692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	203	763	0	ENST00000222270.7:c.7078C>T	p.Pro2360Ser	p.P2360S	ENST00000222270	NM_014727.1	2360	Cca/Tca																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170011257	170011257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	126	540	1	ENST00000295797.4:c.1378G>A	p.Asp460Asn	p.D460N	ENST00000295797	NM_002740.5	460	Gat/Aat																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143130126	143130126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	108	507	0	ENST00000262992.4:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000262992	NM_001101669.1	297	cGa/cAa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286937	33286937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	216	746	1	ENST00000374542.5:c.2000C>A	p.Pro667His	p.P667H	ENST00000374542	NM_001141970.1	667	cCc/cAc																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64290026	64290026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	114	470	1	ENST00000370651.3:c.469C>T	p.Arg157Trp	p.R157W	ENST00000370651	NM_003463.4	157	Cgg/Tgg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137309085	137309085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777558913		P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	214	777	2	ENST00000481739.1:c.692C>T	p.Pro231Leu	p.P231L	ENST00000481739	NM_002957.4	231	cCg/cTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70357413	70357413	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	140	339	0	ENST00000374080.3:c.5754T>G	p.Ser1918Arg	p.S1918R	ENST00000374080		1918	agT/agG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	292	484	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435125	18435125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	144	498	0	ENST00000266497.5:c.110G>T	p.Ser37Ile	p.S37I	ENST00000266497		37	aGt/aTt																																																																														
ATM	472	MSKCC	GRCh37	11	108180981	108180981	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	202	399	0	ENST00000278616.4:c.5857A>G	p.Thr1953Ala	p.T1953A	ENST00000278616	NM_000051.3	1953	Aca/Gca																																																																														
MGA	23269	MSKCC	GRCh37	15	41988873	41988882	+	frameshift_variant	Frame_Shift_Del	DEL	TATATCTGAC	TATATCTGAC	-			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	194	594	0	ENST00000219905.7:c.1665_1674del	p.Asp555GlufsTer42	p.D555Efs*42	ENST00000219905	NM_001164273.1	555	gaTATATCTGAC/ga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2122357	2122357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	494	614	1	ENST00000219476.3:c.2213G>T	p.Cys738Phe	p.C738F	ENST00000219476	NM_000548.3	738	tGc/tTc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143235875	143235875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	161	398	0	ENST00000262992.4:c.413C>T	p.Pro138Leu	p.P138L	ENST00000262992	NM_001101669.1	138	cCa/cTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341776	8341776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	589	664	1	ENST00000356435.5:c.4864G>T	p.Ala1622Ser	p.A1622S	ENST00000356435		1622	Gct/Tct																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028875	47028875	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	425	551	0	ENST00000329236.7:c.179C>G	p.Ser60Ter	p.S60*	ENST00000329236	NM_001204466.1	60	tCa/tGa																																																																														
ATRX	546	MSKCC	GRCh37	X	76944337	76944337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	267	572	1	ENST00000373344.5:c.568C>A	p.Pro190Thr	p.P190T	ENST00000373344	NM_000489.3	190	Cct/Act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	17	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	32	507	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0039353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	13	694	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857977	9857977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	103	676	0	ENST00000330684.3:c.3424C>T	p.Pro1142Ser	p.P1142S	ENST00000330684	NM_001134407.1	1142	Ccc/Tcc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65323383	65323384	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0039354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	74	599	0	ENST00000342505.4:c.1413_1414del	p.Phe472Ter	p.F472*	ENST00000342505	NM_002227.2	471	gaCTtt/gatt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468263	50468263	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	93	640	0	ENST00000331340.3:c.1498C>T	p.Gln500Ter	p.Q500*	ENST00000331340	NM_006060.4	500	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1458	95	669	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70347265	70347265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	67	629	0	ENST00000374080.3:c.2929G>C	p.Asp977His	p.D977H	ENST00000374080		977	Gat/Cat																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551681	150551681	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	64	471	0	ENST00000369026.2:c.326A>T	p.Glu109Val	p.E109V	ENST00000369026	NM_021960.4	109	gAg/gTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70333573	70333573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	43	539	0	ENST00000373644.4:c.1478C>T	p.Ala493Val	p.A493V	ENST00000373644	NM_030625.2	493	gCt/gTt																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872514	35872514	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	75	456	0	ENST00000216797.5:c.389T>A	p.Leu130His	p.L130H	ENST00000216797	NM_020529.2	130	cTt/cAt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7982773	7982773	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	77	676	0	ENST00000319144.4:c.1012G>C	p.Ala338Pro	p.A338P	ENST00000319144	NM_001139.2	338	Gcc/Ccc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133851	55133851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	50	429	1	ENST00000257290.5:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000257290	NM_006206.4	355	aCt/aTt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874559	35874559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	48	497	2	ENST00000303115.3:c.715G>T	p.Asp239Tyr	p.D239Y	ENST00000303115	NM_002185.3	239	Gat/Tat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188395	32188395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	78	529	0	ENST00000375023.3:c.946G>T	p.Asp316Tyr	p.D316Y	ENST00000375023	NM_004557.3	316	Gat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	114	472	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	158	695	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231357	5231357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	76	642	0	ENST00000357368.4:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000357368	NM_002850.3	707	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	38	423	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	73	876	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0039459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	89	310	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	39	356	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247175	153247175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	30	210	0	ENST00000281708.4:c.1627A>G	p.Arg543Gly	p.R543G	ENST00000281708	NM_033632.3	543	Aga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	258	635	1	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	161	710	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0039460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	43	273	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0039461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	56	312	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	76	609	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	99	778	0	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	99	778	0	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
ERCC2	2068	MSKCC	GRCh37	19	45855469	45855469	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	87	613	0	ENST00000391945.4:c.2188C>T	p.Arg730Trp	p.R730W	ENST00000391945	NM_000400.3	730	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706985	117706985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	54	495	0	ENST00000368508.3:c.2165C>T	p.Thr722Met	p.T722M	ENST00000368508	NM_002944.2	722	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	133	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336068	73336068	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	59	232	0	ENST00000377767.4:c.2335A>T	p.Ile779Phe	p.I779F	ENST00000377767	NM_014953.3	779	Att/Ttt																																																																														
TET2	54790	MSKCC	GRCh37	4	106162529	106162529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	111	308	0	ENST00000380013.4:c.3443A>G	p.Tyr1148Cys	p.Y1148C	ENST00000380013	NM_001127208.2	1148	tAt/tGt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097763	8097763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	332	802	0	ENST00000346208.3:c.145G>A	p.Val49Met	p.V49M	ENST00000346208		49	Gtg/Atg																																																																														
MAX	4149	MSKCC	GRCh37	14	65543382	65543382	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0039647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	218	590	0	ENST00000358664.4:c.296-1G>C		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																															
SETD2	29072	MSKCC	GRCh37	3	47162835	47162835	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0006036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	82	358	0	ENST00000409792.3:c.3291T>G	p.Tyr1097Ter	p.Y1097*	ENST00000409792	NM_014159.6	1097	taT/taG																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436827	52436827	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	101	468	0	ENST00000460680.1:c.1951A>T	p.Lys651Ter	p.K651*	ENST00000460680	NM_004656.3	651	Aag/Tag																																																																														
RAD52	5893	MSKCC	GRCh37	12	1023120	1023120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	48	409	0	ENST00000358495.3:c.1135C>A	p.Pro379Thr	p.P379T	ENST00000358495	NM_134424.2	379	Cca/Aca																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259967	16259967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	266	646	3	ENST00000375759.3:c.7232C>T	p.Ser2411Leu	p.S2411L	ENST00000375759	NM_015001.2	2411	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056191	27056191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	277	593	0	ENST00000324856.7:c.1187G>A	p.Gly396Asp	p.G396D	ENST00000324856	NM_006015.4	396	gGc/gAc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932112	36932112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1708	177	930	0	ENST00000361632.4:c.2357C>T	p.Ser786Phe	p.S786F	ENST00000361632		786	tCc/tTc																																																																														
IL10	3586	MSKCC	GRCh37	1	206944326	206944326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1656	498	607	2	ENST00000423557.1:c.304G>A	p.Asp102Asn	p.D102N	ENST00000423557	NM_000572.2	102	Gac/Aac																																																																														
ALK	238	MSKCC	GRCh37	2	30143027	30143027	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	346	799	1	ENST00000389048.3:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000389048	NM_004304.4	167	Cag/Tag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172124	99172124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	145	627	2	ENST00000074304.5:c.1690C>T	p.Pro564Ser	p.P564S	ENST00000074304	NM_001134224.1	564	Ccc/Tcc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873458	136873458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2037	211	1015	0	ENST00000241393.3:c.40G>A	p.Glu14Lys	p.E14K	ENST00000241393	NM_003467.2	14	Gag/Aag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198260841	198260841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	42	415	0	ENST00000335508.6:c.3478G>A	p.Glu1160Lys	p.E1160K	ENST00000335508	NM_012433.2	1160	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295705	212295705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	53	445	0	ENST00000342788.4:c.2608G>A	p.Gly870Arg	p.G870R	ENST00000342788	NM_005235.2	870	Gga/Aga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499483	89499483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	159	491	2	ENST00000336596.2:c.2653C>T	p.Pro885Ser	p.P885S	ENST00000336596	NM_005233.5	885	Ccc/Tcc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803395	1803395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1349	330	784	2	ENST00000260795.2:c.664G>A	p.Asp222Asn	p.D222N	ENST00000260795		222	Gac/Aac																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133889	55133889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	55	451	0	ENST00000257290.5:c.1102G>A	p.Glu368Lys	p.E368K	ENST00000257290	NM_006206.4	368	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	260	356	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112175118	112175118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	28	245	1	ENST00000257430.4:c.3827C>T	p.Ser1276Leu	p.S1276L	ENST00000257430	NM_000038.5	1276	tCa/tTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170292	32170292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	511	639	0	ENST00000375023.3:c.3316C>T	p.Pro1106Ser	p.P1106S	ENST00000375023	NM_004557.3	1106	Cct/Tct																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288200	33288200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	164	406	0	ENST00000374542.5:c.1208C>T	p.Ser403Phe	p.S403F	ENST00000374542	NM_001141970.1	403	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120377	94120377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	190	895	0	ENST00000369303.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000369303	NM_004440.3	225	tCc/tTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631341	117631341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	124	610	1	ENST00000368508.3:c.6337G>A	p.Asp2113Asn	p.D2113N	ENST00000368508	NM_002944.2	2113	Gat/Aat																																																																														
HGF	3082	MSKCC	GRCh37	7	81381451	81381451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	119	546	0	ENST00000222390.5:c.610C>T	p.Pro204Ser	p.P204S	ENST00000222390	NM_000601.4	204	Cct/Tct																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508406	106508406	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	35	228	0	ENST00000359195.3:c.400C>T	p.Gln134Ter	p.Q134*	ENST00000359195	NM_002649.2	134	Cag/Tag																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271265	38271265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	179	513	1	ENST00000425967.3:c.2443C>T	p.Arg815Trp	p.R815W	ENST00000425967	NM_001174067.1	815	Cgg/Tgg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371974	55371974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	40	249	1	ENST00000297316.4:c.664C>T	p.Pro222Ser	p.P222S	ENST00000297316	NM_022454.3	222	Ccc/Tcc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317117	87317117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	128	486	0	ENST00000277120.3:c.256G>A	p.Asp86Asn	p.D86N	ENST00000277120		86	Gat/Aat																																																																														
CBL	867	MSKCC	GRCh37	11	119149241	119149241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	153	755	1	ENST00000264033.4:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000264033	NM_005188.3	417	Cct/Tct																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719887	18719887	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146312199		P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	56	432	0	ENST00000266497.5:c.3784C>T	p.Pro1262Ser	p.P1262S	ENST00000266497		1262	Cct/Tct																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944947	31944947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	73	425	0	ENST00000340398.3:c.154C>T	p.Arg52Cys	p.R52C	ENST00000340398	NM_001013699.2	52	Cgt/Tgt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856421	111856421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	132	265	0	ENST00000341259.2:c.472C>T	p.His158Tyr	p.H158Y	ENST00000341259	NM_005475.2	158	Cac/Tac																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012362	29012362	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	118	506	2	ENST00000282397.4:c.509A>T	p.Lys170Ile	p.K170I	ENST00000282397	NM_002019.4	170	aAa/aTa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2103391	2103391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	301	758	3	ENST00000219476.3:c.274G>A	p.Glu92Lys	p.E92K	ENST00000219476	NM_000548.3	92	Gag/Aag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2115592	2115592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1433	141	696	0	ENST00000219476.3:c.1672G>A	p.Glu558Lys	p.E558K	ENST00000219476	NM_000548.3	558	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858735	9858735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	164	561	1	ENST00000330684.3:c.2666G>A	p.Gly889Glu	p.G889E	ENST00000330684	NM_001134407.1	889	gGa/gAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892177	9892177	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1257	268	742	2	ENST00000330684.3:c.2313G>A	p.Trp771Ter	p.W771*	ENST00000330684	NM_001134407.1	771	tgG/tgA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934906	9934906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	81	570	0	ENST00000330684.3:c.1384G>A	p.Asp462Asn	p.D462N	ENST00000330684	NM_001134407.1	462	Gat/Aat																																																																														
CBFB	865	MSKCC	GRCh37	16	67070581	67070581	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	132	655	0	ENST00000412916.2:c.205T>G	p.Phe69Val	p.F69V	ENST00000412916		69	Ttt/Gtt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89865593	89865593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	223	632	1	ENST00000389301.3:c.874C>T	p.His292Tyr	p.H292Y	ENST00000389301	NM_000135.2	292	Cac/Tac																																																																														
NF1	4763	MSKCC	GRCh37	17	29509639	29509639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	176	506	1	ENST00000358273.4:c.844C>T	p.Gln282Ter	p.Q282*	ENST00000358273	NM_001042492.2	282	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29654559	29654559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	202	552	0	ENST00000358273.4:c.5311A>G	p.Lys1771Glu	p.K1771E	ENST00000358273	NM_001042492.2	1771	Aaa/Gaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223246	41223246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	120	413	0	ENST00000357654.3:c.4685C>T	p.Pro1562Leu	p.P1562L	ENST00000357654	NM_007294.3	1562	cCt/cTt																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117493	4117493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	54	336	1	ENST00000262948.5:c.227C>T	p.Ser76Leu	p.S76L	ENST00000262948	NM_030662.3	76	tCa/tTa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262096	10262096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1247	305	744	0	ENST00000340748.4:c.2195C>T	p.Ser732Phe	p.S732F	ENST00000340748		732	tCt/tTt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910609	50910609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1658	263	886	0	ENST00000440232.2:c.1712C>T	p.Pro571Leu	p.P571L	ENST00000440232	NM_002691.3	571	cCc/cTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538311	9538311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	205	650	0	ENST00000353224.5:c.1687G>A	p.Gly563Arg	p.G563R	ENST00000353224	NM_177990.2	563	Gga/Aga																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268747	46268747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1486	337	908	1	ENST00000371998.3:c.3032C>T	p.Pro1011Leu	p.P1011L	ENST00000371998		1011	cCc/cTc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321304	1321304	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	188	524	0	ENST00000381566.1:c.451C>T	p.Gln151Ter	p.Q151*	ENST00000381566		151	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	282	593	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	118	317	0				ENST00000310581	NM_198253.2																																																																																
PAK7	57144	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	73	592	0	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																																																														
JUN	3725	MSKCC	GRCh37	1	59248444	59248444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	88	471	0	ENST00000371222.2:c.299C>T	p.Pro100Leu	p.P100L	ENST00000371222	NM_002228.3	100	cCc/cTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251620	212251620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	173	601	0	ENST00000342788.4:c.3439G>A	p.Glu1147Lys	p.E1147K	ENST00000342788	NM_005235.2	1147	Gag/Aag																																																																														
TP63	8626	MSKCC	GRCh37	3	189582106	189582106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	130	761	0	ENST00000264731.3:c.665G>A	p.Gly222Glu	p.G222E	ENST00000264731	NM_003722.4	222	gGa/gAa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161465	2161465	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	81	734	0	ENST00000434045.2:c.62A>C	p.Gln21Pro	p.Q21P	ENST00000434045	NM_001127598.1	21	cAa/cCa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888120	81888120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199638859		P-0006193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	111	901	1	ENST00000359376.3:c.265C>T	p.Arg89Cys	p.R89C	ENST00000359376	NM_002661.3	89	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222978	5222978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	29	449	0	ENST00000357368.4:c.2825C>T	p.Ser942Leu	p.S942L	ENST00000357368	NM_002850.3	942	tCg/tTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7184326	7184326	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	40	639	0	ENST00000302850.5:c.974+1G>T		p.X325_splice	ENST00000302850	NM_000208.2	325																																																																															
RBM10	8241	MSKCC	GRCh37	X	47040795	47040795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	78	681	0	ENST00000329236.7:c.1196G>A	p.Gly399Glu	p.G399E	ENST00000329236	NM_001204466.1	399	gGa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0006239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	94	295	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1282564	1282564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	75	379	0	ENST00000310581.5:c.1749G>T	p.Lys583Asn	p.K583N	ENST00000310581	NM_198253.2	583	aaG/aaT																																																																														
TCEB1	6921	MSKCC	GRCh37	8	74858968	74858968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	76	268	0	ENST00000284811.8:c.236A>G	p.Tyr79Cys	p.Y79C	ENST00000284811		79	tAc/tGc																																																																														
MGA	23269	MSKCC	GRCh37	15	42005617	42005617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	156	797	1	ENST00000219905.7:c.3353C>T	p.Ala1118Val	p.A1118V	ENST00000219905	NM_001164273.1	1118	gCa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577541	7577541	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	566	478	0	ENST00000269305.4:c.740A>T	p.Asn247Ile	p.N247I	ENST00000269305	NM_001126112.2	247	aAc/aTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106162585	106162585	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0006340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	120	315	0	ENST00000380013.4:c.3499A>G	p.Arg1167Gly	p.R1167G	ENST00000380013	NM_001127208.2	1167	Agg/Ggg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278073	18278073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1276	72	464	0	ENST00000222254.8:c.1693C>A	p.Pro565Thr	p.P565T	ENST00000222254	NM_005027.3	565	Ccg/Acg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0006468-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			157	401	604	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0006468-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			568	343	509	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647631	23647631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006468-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			382	381	525	0	ENST00000261584.4:c.236A>T	p.Tyr79Phe	p.Y79F	ENST00000261584	NM_024675.3	79	tAt/tTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29687665	29687665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006468-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			916	583	859	0	ENST00000358273.4:c.8321C>G	p.Ala2774Gly	p.A2774G	ENST00000358273	NM_001042492.2	2774	gCc/gGc																																																																														
APC	324	MSKCC	GRCh37	5	112175345	112175346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006468-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			176	390	518	0	ENST00000257430.4:c.4056dup	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1352	gtt/gTtt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	103	391	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0006515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	391	386	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663281	227663281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	126	385	0	ENST00000305123.5:c.174C>A	p.Ser58Arg	p.S58R	ENST00000305123	NM_005544.2	58	agC/agA																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71037213	71037213	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	112	427	0	ENST00000318789.4:c.1078G>T	p.Glu360Ter	p.E360*	ENST00000318789	NM_032682.5	360	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416516	49416516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	161	463	0	ENST00000301067.7:c.16195G>T	p.Val5399Leu	p.V5399L	ENST00000301067	NM_003482.3	5399	Gtg/Ttg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652038	36652135	+	frameshift_variant	Frame_Shift_Del	DEL	GTCACCGAGACACCACTGGAGGGTGACTTCGCCTGGGAGCGTGTGCGGGGCCTTGGCCTGCCCAAGCTCTACCTTCCCACGGGGCCCCGGCGAGGCCG	GTCACCGAGACACCACTGGAGGGTGACTTCGCCTGGGAGCGTGTGCGGGGCCTTGGCCTGCCCAAGCTCTACCTTCCCACGGGGCCCCGGCGAGGCCG	-			P-0006515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	282	511	0	ENST00000244741.5:c.161_258del	p.Val54GlyfsTer2	p.V54Gfs*2	ENST00000244741	NM_000389.4	54	GTCACCGAGACACCACTGGAGGGTGACTTCGCCTGGGAGCGTGTGCGGGGCCTTGGCCTGCCCAAGCTCTACCTTCCCACGGGGCCCCGGCGAGGCCGg/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	350	476	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	546	692	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943694	17943694	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201241352		P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	445	666	0	ENST00000458235.1:c.2395C>T	p.Arg799Cys	p.R799C	ENST00000458235	NM_000215.3	799	Cgt/Tgt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569702	95569702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	322	529	0	ENST00000343455.3:c.4031C>T	p.Ser1344Leu	p.S1344L	ENST00000343455	NM_177438.2	1344	tCa/tTa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243859016	243859016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	320	393	0	ENST00000263826.5:c.49G>A	p.Glu17Lys	p.E17K	ENST00000263826	NM_005465.4	17	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254987	16254987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	306	514	0	ENST00000375759.3:c.2252C>T	p.Ser751Phe	p.S751F	ENST00000375759	NM_015001.2	751	tCt/tTt																																																																														
ALK	238	MSKCC	GRCh37	2	29451917	29451917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	548	619	2	ENST00000389048.3:c.2648G>A	p.Trp883Ter	p.W883*	ENST00000389048	NM_004304.4	883	tGg/tAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530198	212530198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	276	458	0	ENST00000342788.4:c.1721C>T	p.Pro574Leu	p.P574L	ENST00000342788	NM_005235.2	574	cCt/cTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480345	89480345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	467	737	0	ENST00000336596.2:c.2182C>G	p.Arg728Gly	p.R728G	ENST00000336596	NM_005233.5	728	Cga/Gga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524737	187524737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	458	780	0	ENST00000441802.2:c.10943C>T	p.Ala3648Val	p.A3648V	ENST00000441802	NM_005245.3	3648	gCc/gTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707725	176707725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	405	614	1	ENST00000439151.2:c.5782G>A	p.Gly1928Arg	p.G1928R	ENST00000439151	NM_022455.4	1928	Gga/Aga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945021	151945021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	39	46	0	ENST00000262189.6:c.2498G>A	p.Arg833Lys	p.R833K	ENST00000262189	NM_170606.2	833	aGa/aAa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372379	55372379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	347	659	1	ENST00000297316.4:c.1069G>A	p.Glu357Lys	p.E357K	ENST00000297316	NM_022454.3	357	Gag/Aag																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63662131	63662131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	341	401	0	ENST00000279873.7:c.235C>T	p.Pro79Ser	p.P79S	ENST00000279873	NM_032199.2	79	Cca/Tca																																																																														
TET1	80312	MSKCC	GRCh37	10	70450891	70450891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	274	468	1	ENST00000373644.4:c.5731C>T	p.Pro1911Ser	p.P1911S	ENST00000373644	NM_030625.2	1911	Ccc/Tcc																																																																														
WT1	7490	MSKCC	GRCh37	11	32413577	32413577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	516	601	0	ENST00000332351.3:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000332351	NM_024426.4	458	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344087	118344087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	301	452	0	ENST00000534358.1:c.2213G>T	p.Arg738Ile	p.R738I	ENST00000534358	NM_005933.3	738	aGa/aTa																																																																														
CBL	867	MSKCC	GRCh37	11	119149003	119149003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	362	585	0	ENST00000264033.4:c.1223G>A	p.Trp408Ter	p.W408*	ENST00000264033	NM_005188.3	408	tGg/tAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433634	49433634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	548	772	0	ENST00000301067.7:c.7919C>T	p.Ser2640Phe	p.S2640F	ENST00000301067	NM_003482.3	2640	tCt/tTt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865581	57865581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	674	974	1	ENST00000228682.2:c.3058G>A	p.Gly1020Arg	p.G1020R	ENST00000228682	NM_005269.2	1020	Gga/Aga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914220	32914220	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1197	843	1091	0	ENST00000380152.3:c.5728A>G	p.Asn1910Asp	p.N1910D	ENST00000380152		1910	Aat/Gat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32945216	32945216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	496	675	0	ENST00000380152.3:c.8611G>A	p.Glu2871Lys	p.E2871K	ENST00000380152		2871	Gag/Aag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436671	110436671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	430	682	0	ENST00000375856.3:c.1730C>T	p.Ser577Phe	p.S577F	ENST00000375856	NM_003749.2	577	tCc/tTc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68331729	68331729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	354	387	1	ENST00000487270.1:c.325C>T	p.Pro109Ser	p.P109S	ENST00000487270	NM_133509.3	109	Cca/Tca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845475	72845475	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	563	814	0	ENST00000268489.5:c.3864+1G>A		p.X1288_splice	ENST00000268489	NM_006885.3	1288																																																																															
BRCA1	672	MSKCC	GRCh37	17	41209086	41209086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1195	806	996	0	ENST00000357654.3:c.5260G>A	p.Glu1754Lys	p.E1754K	ENST00000357654	NM_007294.3	1754	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7163202	7163202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	446	624	0	ENST00000302850.5:c.1870G>A	p.Val624Met	p.V624M	ENST00000302850	NM_000208.2	624	Gtg/Atg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290078	15290078	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	365	626	0	ENST00000263388.2:c.3476T>A	p.Ile1159Asn	p.I1159N	ENST00000263388	NM_000435.2	1159	aTt/aAt																																																																														
TOP1	7150	MSKCC	GRCh37	20	39690066	39690066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	436	577	0	ENST00000361337.2:c.91C>T	p.Arg31Ter	p.R31*	ENST00000361337	NM_003286.2	31	Cga/Tga																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206767	36206767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	331	515	2	ENST00000300305.3:c.745C>T	p.Pro249Ser	p.P249S	ENST00000300305		249	Cct/Tct																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933179	39933179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	732	1006	0	ENST00000378444.4:c.1420G>A	p.Gly474Ser	p.G474S	ENST00000378444	NM_001123385.1	474	Ggc/Agc																																																																														
MED12	9968	MSKCC	GRCh37	X	70345969	70345969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	645	939	2	ENST00000374080.3:c.2506C>T	p.Leu836Phe	p.L836F	ENST00000374080		836	Ctt/Ttt																																																																														
MED12	9968	MSKCC	GRCh37	X	70351957	70351957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	729	1050	1	ENST00000374080.3:c.4154C>T	p.Ala1385Val	p.A1385V	ENST00000374080		1385	gCc/gTc																																																																														
BTK	695	MSKCC	GRCh37	X	100625033	100625033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	571	817	0	ENST00000308731.7:c.344C>A	p.Ser115Tyr	p.S115Y	ENST00000308731	NM_000061.2	115	tCc/tAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590574	95590574	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	569	746	0	ENST00000343455.3:c.1335delT	p.Ile446PhefsTer12	p.I446Ffs*12	ENST00000343455	NM_177438.2	445	atT/at																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524334	187524334	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	259	471	0	ENST00000441802.2:c.11346C>A	p.Cys3782Ter	p.C3782*	ENST00000441802	NM_005245.3	3782	tgC/tgA																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348837	89348838	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1324	957	1261	2	ENST00000301030.4:c.4112_4113delinsTT	p.Ala1371Val	p.A1371V	ENST00000301030	NM_001256183.1	1371	gCC/gTT																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006856-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			100	547	493	3	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664915	138664915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006856-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			224	128	136	0	ENST00000330315.3:c.650C>T	p.Ser217Phe	p.S217F	ENST00000330315	NM_023067.3	217	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577512	7577512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006856-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			110	496	454	3	ENST00000269305.4:c.769C>G	p.Leu257Val	p.L257V	ENST00000269305	NM_001126112.2	257	Ctg/Gtg																																																																														
RB1	5925	MSKCC	GRCh37	13	48941665	48941666	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0006856-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			80	627	263	2	ENST00000267163.4:c.976_977del	p.Leu326Ter	p.L326*	ENST00000267163	NM_000321.2	325	taTCtt/tatt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	105	217	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	184	362	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	166	334	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99163051	99163051	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	238	283	0	ENST00000074304.5:c.1057C>A	p.Gln353Lys	p.Q353K	ENST00000074304	NM_001134224.1	353	Cag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828538	72828538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	250	630	0	ENST00000268489.5:c.8043G>C	p.Lys2681Asn	p.K2681N	ENST00000268489	NM_006885.3	2681	aaG/aaC																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	217	570	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59937172	59937172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	91	481	0	ENST00000259008.2:c.190C>A	p.Gln64Lys	p.Q64K	ENST00000259008	NM_032043.2	64	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112178891	112178903	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAGTCCTTCTA	GAAAGTCCTTCTA	-			P-0007005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	47	459	0	ENST00000257430.4:c.7602_7614del	p.Glu2534AspfsTer24	p.E2534Dfs*24	ENST00000257430	NM_000038.5	2534	GAAAGTCCTTCTAga/ga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	74	189	0				ENST00000310581	NM_198253.2																																																																																
VHL	7428	MSKCC	GRCh37	3	10191488	10191488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	96	278	0	ENST00000256474.2:c.481C>T	p.Arg161Ter	p.R161*	ENST00000256474	NM_000551.3	161	Cga/Tga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286907	33286907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	175	320	0	ENST00000374542.5:c.2030C>T	p.Ala677Val	p.A677V	ENST00000374542	NM_001141970.1	677	gCc/gTc																																																																														
ERG	2078	MSKCC	GRCh37	21	39817532	39817532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	156	341	0	ENST00000288319.7:c.31G>A	p.Val11Ile	p.V11I	ENST00000288319	NM_182918.3	11	Gtt/Att																																																																														
TERT	7015	MSKCC	GRCh37	5	1295368	1295368	+	upstream_gene_variant	5'Flank	SNP	T	T	C			P-0007505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	35	161	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108235813	108235813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	64	374	0	ENST00000278616.4:c.8855T>C	p.Leu2952Pro	p.L2952P	ENST00000278616	NM_000051.3	2952	cTt/cCt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9547004	9547004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	52	130	0	ENST00000353224.5:c.1018C>T	p.Leu340Phe	p.L340F	ENST00000353224	NM_177990.2	340	Ctc/Ttc																																																																														
MED12	9968	MSKCC	GRCh37	X	70357453	70357453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	128	248	0	ENST00000374080.3:c.5794C>T	p.Pro1932Ser	p.P1932S	ENST00000374080		1932	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	17	278	0	ENST00000269305.4:c.526T>G	p.Cys176Gly	p.C176G	ENST00000269305	NM_001126112.2	176	Tgc/Ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0007653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	9	287	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	55	210	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	195	387	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	255	579	2	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
KDR	3791	MSKCC	GRCh37	4	55976861	55976861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	188	390	0	ENST00000263923.4:c.1051C>T	p.Pro351Ser	p.P351S	ENST00000263923	NM_002253.2	351	Cct/Tct																																																																														
SDHB	6390	MSKCC	GRCh37	1	17380510	17380510	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199948437		P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	116	320	4	ENST00000375499.3:c.5C>T	p.Ala2Val	p.A2V	ENST00000375499	NM_003000.2	2	gCg/gTg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739098	46739098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	229	468	4	ENST00000371975.4:c.1447C>T	p.Pro483Ser	p.P483S	ENST00000371975	NM_003579.3	483	Cct/Tct																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25973239	25973239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	117	260	2	ENST00000435504.4:c.1186C>T	p.Pro396Ser	p.P396S	ENST00000435504		396	Ccc/Tcc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198268463	198268463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	174	384	0	ENST00000335508.6:c.1565A>G	p.Lys522Arg	p.K522R	ENST00000335508	NM_012433.2	522	aAa/aGa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713871	30713871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	161	307	1	ENST00000359013.4:c.1271G>A	p.Gly424Glu	p.G424E	ENST00000359013	NM_001024847.2	424	gGg/gAg																																																																														
ATR	545	MSKCC	GRCh37	3	142180893	142180893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	168	372	1	ENST00000350721.4:c.7081C>T	p.His2361Tyr	p.H2361Y	ENST00000350721	NM_001184.3	2361	Cat/Tat																																																																														
TP63	8626	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	185	348	0	ENST00000264731.3:c.1135C>A	p.Arg379Ser	p.R379S	ENST00000264731	NM_003722.4	379	Cgt/Agt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747900	41747900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	98	312	0	ENST00000226382.2:c.869C>T	p.Pro290Leu	p.P290L	ENST00000226382	NM_003924.3	290	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658412	117658412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	167	461	1	ENST00000368508.3:c.5171C>T	p.Ser1724Leu	p.S1724L	ENST00000368508	NM_002944.2	1724	tCa/tTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522394	157522394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	140	304	0	ENST00000346085.5:c.4666C>T	p.Pro1556Ser	p.P1556S	ENST00000346085	NM_020732.3	1556	Cca/Tca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979544	2979544	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	139	381	0	ENST00000396946.4:c.703C>G	p.Arg235Gly	p.R235G	ENST00000396946	NM_032415.4	235	Cgg/Ggg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87563491	87563491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	120	246	1	ENST00000277120.3:c.1879G>A	p.Asp627Asn	p.D627N	ENST00000277120		627	Gac/Aac																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793298	139793298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	176	426	1	ENST00000247668.2:c.106G>T	p.Ala36Ser	p.A36S	ENST00000247668	NM_021138.3	36	Gcc/Tcc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344609	118344609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	262	613	0	ENST00000534358.1:c.2735C>T	p.Ser912Phe	p.S912F	ENST00000534358	NM_005933.3	912	tCc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372543	118372543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	212	477	1	ENST00000534358.1:c.6476C>T	p.Ser2159Phe	p.S2159F	ENST00000534358	NM_005933.3	2159	tCc/tTc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022504	12022504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	201	401	0	ENST00000396373.4:c.610C>T	p.Pro204Ser	p.P204S	ENST00000396373	NM_001987.4	204	Ccc/Tcc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230704	46230704	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	202	519	1	ENST00000334344.6:c.953T>A	p.Leu318His	p.L318H	ENST00000334344	NM_152641.2	318	cTt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426447	49426447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	187	467	1	ENST00000301067.7:c.12041C>T	p.Ala4014Val	p.A4014V	ENST00000301067	NM_003482.3	4014	gCc/gTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589322	28589322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	206	474	1	ENST00000241453.7:c.2725G>A	p.Asp909Asn	p.D909N	ENST00000241453	NM_004119.2	909	Gat/Aat																																																																														
FLT1	2321	MSKCC	GRCh37	13	28979974	28979974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	149	495	1	ENST00000282397.4:c.1494G>A	p.Met498Ile	p.M498I	ENST00000282397	NM_002019.4	498	atG/atA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574717	95574717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	209	432	0	ENST00000343455.3:c.2380C>T	p.Pro794Ser	p.P794S	ENST00000343455	NM_177438.2	794	Cct/Tct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857873	9857873	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	201	419	0	ENST00000330684.3:c.3528G>C	p.Glu1176Asp	p.E1176D	ENST00000330684	NM_001134407.1	1176	gaG/gaC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992025	72992025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	229	529	0	ENST00000268489.5:c.2020C>T	p.Pro674Ser	p.P674S	ENST00000268489	NM_006885.3	674	Ccc/Tcc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78921067	78921067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	190	438	0	ENST00000306801.3:c.3181C>T	p.His1061Tyr	p.H1061Y	ENST00000306801	NM_020761.2	1061	Cac/Tac																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222173	2222173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	126	308	0	ENST00000398665.3:c.3005C>T	p.Pro1002Leu	p.P1002L	ENST00000398665	NM_032482.2	1002	cCc/cTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827990	40827990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	112	227	1	ENST00000373198.4:c.2438C>T	p.Ala813Val	p.A813V	ENST00000373198	NM_133170.3	813	gCc/gTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100951	41100951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	129	269	0	ENST00000373198.4:c.1405G>A	p.Gly469Ser	p.G469S	ENST00000373198	NM_133170.3	469	Ggc/Agc																																																																														
ARAF	369	MSKCC	GRCh37	X	47428415	47428415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	185	541	1	ENST00000377045.4:c.1283G>A	p.Arg428Gln	p.R428Q	ENST00000377045	NM_001654.4	428	cGa/cAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412488	63412488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	207	507	0	ENST00000330258.3:c.679G>A	p.Glu227Lys	p.E227K	ENST00000330258	NM_152424.3	227	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70339226	70339226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	198	486	0	ENST00000374080.3:c.103G>A	p.Glu35Lys	p.E35K	ENST00000374080		35	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70344126	70344126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	206	517	2	ENST00000374080.3:c.1862G>A	p.Arg621Gln	p.R621Q	ENST00000374080		621	cGa/cAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70357109	70357109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	195	529	0	ENST00000374080.3:c.5624C>T	p.Pro1875Leu	p.P1875L	ENST00000374080		1875	cCt/cTt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179020	123179020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	168	476	0	ENST00000218089.9:c.469G>A	p.Gly157Arg	p.G157R	ENST00000218089	NM_001042749.1	157	Gga/Aga																																																																														
INSR	3643	MSKCC	GRCh37	19	7166317	7166318	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0007876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	138	404	0	ENST00000302850.5:c.1708_1709delinsTT	p.Pro570Phe	p.P570F	ENST00000302850	NM_000208.2	570	CCc/TTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	106	186	0				ENST00000310581	NM_198253.2																																																																																
BRCA2	675	MSKCC	GRCh37	13	32914811	32914811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	357	723	2	ENST00000380152.3:c.6319C>T	p.Pro2107Ser	p.P2107S	ENST00000380152		2107	Cct/Tct																																																																														
ETV1	2115	MSKCC	GRCh37	7	14017058	14017058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	502	315	1	ENST00000405192.2:c.229G>A	p.Glu77Lys	p.E77K	ENST00000405192	NM_001163147.1	77	Gaa/Aaa																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165547	118165547	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	200	331	0	ENST00000369448.3:c.57G>A	p.Trp19Ter	p.W19*	ENST00000369448	NM_017709.3	19	tgG/tgA																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177933	56177933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	280	435	0	ENST00000399503.3:c.2906C>T	p.Ser969Phe	p.S969F	ENST00000399503	NM_005921.1	969	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967883	93967883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	424	530	0	ENST00000369303.4:c.2044G>A	p.Glu682Lys	p.E682K	ENST00000369303	NM_004440.3	682	Gaa/Aaa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148524329	148524329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	562	443	1	ENST00000320356.2:c.655C>T	p.Pro219Ser	p.P219S	ENST00000320356	NM_004456.4	219	Cct/Tct																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797282	135797282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	244	446	0	ENST00000298552.3:c.587C>T	p.Pro196Leu	p.P196L	ENST00000298552	NM_001162426.1	196	cCt/cTt																																																																														
PGR	5241	MSKCC	GRCh37	11	100920761	100920761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	292	603	0	ENST00000325455.5:c.2387C>T	p.Ser796Leu	p.S796L	ENST00000325455	NM_001202474.3	796	tCa/tTa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245634	41245634	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	272	422	1	ENST00000357654.3:c.1914A>T	p.Glu638Asp	p.E638D	ENST00000357654	NM_007294.3	638	gaA/gaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980895	40980895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	314	254	0	ENST00000373198.4:c.1591C>T	p.Pro531Ser	p.P531S	ENST00000373198	NM_133170.3	531	Cca/Tca																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843595	156843595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139875058		P-0007987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	125	439	0	ENST00000524377.1:c.1021G>A	p.Val341Met	p.V341M	ENST00000524377	NM_002529.3	341	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	155	384	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118365075	118365075	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	58	432	0	ENST00000534358.1:c.5251A>T	p.Lys1751Ter	p.K1751*	ENST00000534358	NM_005933.3	1751	Aaa/Taa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972585	25972585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	60	399	0	ENST00000435504.4:c.1840C>T	p.Arg614Ter	p.R614*	ENST00000435504		614	Cga/Tga																																																																														
CCND1	595	MSKCC	GRCh37	11	69457934	69457934	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	136	476	0	ENST00000227507.2:c.335del	p.Lys112ArgfsTer2	p.K112Rfs*2	ENST00000227507	NM_053056.2	112	Aag/ag																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099408	4099408	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	117	444	0	ENST00000262948.5:c.710A>T	p.Glu237Val	p.E237V	ENST00000262948	NM_030662.3	237	gAg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578395	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0008269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	309	313	0	ENST00000269305.4:c.535_536del	p.His179Ter	p.H179*	ENST00000269305	NM_001126112.2	179	CAt/t																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	32	1347	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1260675	1260675	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	50	1016	0	ENST00000310581.5:c.2884C>G	p.Arg962Gly	p.R962G	ENST00000310581	NM_198253.2	962	Cgc/Ggc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	25	126	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	103	236	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521253	187521253	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	88	448	0	ENST00000441802.2:c.11902C>T	p.Gln3968Ter	p.Q3968*	ENST00000441802	NM_005245.3	3968	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426076	49426089	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGCTGAGCCAGC	AGGGCTGAGCCAGC	-			P-0008453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	18	181	0	ENST00000301067.7:c.12399_12412del	p.Leu4134CysfsTer29	p.L4134Cfs*29	ENST00000301067	NM_003482.3	4133	ctGCTGGCTCAGCCCTct/ctct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	259	359	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																														
MDM4	4194	MSKCC	GRCh37	1	204513670	204513670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	270	217	0	ENST00000367182.3:c.680G>A	p.Gly227Asp	p.G227D	ENST00000367182	NM_001278516.1	227	gGt/gAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812314	212812314	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	278	318	0	ENST00000342788.4:c.262T>A	p.Leu88Ile	p.L88I	ENST00000342788	NM_005235.2	88	Tta/Ata																																																																														
ATR	545	MSKCC	GRCh37	3	142183982	142183982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	352	425	0	ENST00000350721.4:c.6998G>T	p.Arg2333Ile	p.R2333I	ENST00000350721	NM_001184.3	2333	aGa/aTa																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020931	26020931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1905	632	1278	0	ENST00000357647.3:c.214G>T	p.Val72Leu	p.V72L	ENST00000357647	NM_003529.2	72	Gtg/Ttg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845187	151845187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	314	414	0	ENST00000262189.6:c.13825C>T	p.Pro4609Ser	p.P4609S	ENST00000262189	NM_170606.2	4609	Cca/Tca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151960212	151960212	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	28	142	0	ENST00000262189.6:c.1188A>T	p.Gln396His	p.Q396H	ENST00000262189	NM_170606.2	396	caA/caT																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943717	17943717	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	379	271	0	ENST00000458235.1:c.2372C>G	p.Pro791Arg	p.P791R	ENST00000458235	NM_000215.3	791	cCc/cGc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39725893	39725893	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	287	297	0	ENST00000361337.2:c.764A>C	p.Glu255Ala	p.E255A	ENST00000361337	NM_003286.2	255	gAa/gCa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535453	66535453	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	70	135	0	ENST00000273854.3:c.8delG	p.Gly3AlafsTer59	p.G3Afs*59	ENST00000273854	NM_004439.5	3	gGc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0008583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	302	524	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112170788	112170788	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	137	460	1	ENST00000257430.4:c.1886del	p.Leu629Ter	p.L629*	ENST00000257430	NM_000038.5	628	acT/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0008970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	403	420	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
TSC1	7248	MSKCC	GRCh37	9	135797301	135797301	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	173	383	0	ENST00000298552.3:c.568del	p.Arg190AlafsTer20	p.R190Afs*20	ENST00000298552	NM_001162426.1	190	Cgc/gc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37035095	37035095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	119	310	0	ENST00000231790.2:c.57C>G	p.Ile19Met	p.I19M	ENST00000231790	NM_000249.3	19	atC/atG																																																																														
CBFB	865	MSKCC	GRCh37	16	67100697	67100697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	370	400	0	ENST00000412916.2:c.395C>T	p.Ala132Val	p.A132V	ENST00000412916		132	gCc/gTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961825	15961826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	471	551	0	ENST00000268712.3:c.5969dup	p.Thr1991AspfsTer8	p.T1991Dfs*8	ENST00000268712	NM_006311.3	1990	cag/caAg																																																																														
CDH1	999	MSKCC	GRCh37	16	68847346	68847365	+	protein_altering_variant	In_Frame_Del	DEL	TTGTCGTCACCACAAATCCA	TTGTCGTCACCACAAATCCA	CG			P-0008970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	388	513	0	ENST00000261769.5:c.1268_1287delinsCG	p.Phe423_Pro429delinsSer	p.F423_P429delinsS	ENST00000261769	NM_004360.3	423	tTTGTCGTCACCACAAATCCA/tCG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0009616-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			410	588	648	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829850	72829850	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009616-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			578	847	1124	0	ENST00000268489.5:c.6731C>G	p.Ser2244Cys	p.S2244C	ENST00000268489	NM_006885.3	2244	tCt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	97	232	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	262	448	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504417	186504417	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	377	644	0	ENST00000323963.5:c.754A>G	p.Ile252Val	p.I252V	ENST00000323963		252	Att/Gtt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590506	67590506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	289	477	0	ENST00000274335.5:c.1568G>A	p.Arg523Lys	p.R523K	ENST00000274335		523	aGg/aAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163362	32163362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1846	534	719	1	ENST00000375023.3:c.5864C>T	p.Ala1955Val	p.A1955V	ENST00000375023	NM_004557.3	1955	gCc/gTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152007080	152007080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	113	536	2	ENST00000262189.6:c.820G>A	p.Asp274Asn	p.D274N	ENST00000262189	NM_170606.2	274	Gac/Aac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307239	118307239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	26	57	0	ENST00000534358.1:c.12C>G	p.Ser4Arg	p.S4R	ENST00000534358	NM_005933.3	4	agC/agG																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244919	46244919	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	327	519	0	ENST00000334344.6:c.3013C>T	p.Gln1005Ter	p.Q1005*	ENST00000334344	NM_152641.2	1005	Caa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821323	72821323	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	376	669	0	ENST00000268489.5:c.10852C>A	p.Pro3618Thr	p.P3618T	ENST00000268489	NM_006885.3	3618	Ccg/Acg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873633	35873633	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	146	373	0	ENST00000303115.3:c.590del	p.Pro197ArgfsTer47	p.P197Rfs*47	ENST00000303115	NM_002185.3	197	Ccg/cg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231161	46231167	+	frameshift_variant	Frame_Shift_Del	DEL	AAATGTC	AAATGTC	-			P-0009664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	230	461	0	ENST00000334344.6:c.1081_1087del	p.Lys361Ter	p.K361*	ENST00000334344	NM_152641.2	361	AAATGTCta/ta																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	126	422	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	181	380	0	ENST00000368323.3:c.270G>C	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atC																																																																														
ATM	472	MSKCC	GRCh37	11	108199839	108199839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	152	186	0	ENST00000278616.4:c.7181C>T	p.Ser2394Leu	p.S2394L	ENST00000278616	NM_000051.3	2394	tCa/tTa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11206779	11206779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	138	452	0	ENST00000361445.4:c.4640G>C	p.Arg1547Thr	p.R1547T	ENST00000361445	NM_004958.3	1547	aGa/aCa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087548	27087548	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	238	429	0	ENST00000324856.7:c.2122C>T	p.Gln708Ter	p.Q708*	ENST00000324856	NM_006015.4	708	Cag/Tag																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665360	138665360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	132	337	0	ENST00000330315.3:c.205G>A	p.Glu69Lys	p.E69K	ENST00000330315	NM_023067.3	69	Gag/Aag																																																																														
ATR	545	MSKCC	GRCh37	3	142176461	142176461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	154	322	1	ENST00000350721.4:c.7640G>A	p.Arg2547Gln	p.R2547Q	ENST00000350721	NM_001184.3	2547	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672233	86672233	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	85	265	0	ENST00000274376.6:c.2035C>T	p.Arg679Ter	p.R679*	ENST00000274376	NM_002890.2	679	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502190	157502190	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	38	228	0	ENST00000346085.5:c.3223C>T	p.Arg1075Ter	p.R1075*	ENST00000346085	NM_020732.3	1075	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874923	151874923	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	160	390	0	ENST00000262189.6:c.7615C>T	p.Gln2539Ter	p.Q2539*	ENST00000262189	NM_170606.2	2539	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994138	21994138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	187	420	0	ENST00000361570.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000361570	NM_058195.3	106	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994138	21994138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	187	420	0	ENST00000361570.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000361570	NM_058195.3	106	Ggt/Cgt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138158	64138158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	96	233	0	ENST00000334205.4:c.2081C>T	p.Ser694Phe	p.S694F	ENST00000334205	NM_003942.2	694	tCt/tTt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416720	416720	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	158	349	0	ENST00000399788.2:c.3830C>G	p.Ser1277Cys	p.S1277C	ENST00000399788	NM_001042603.1	1277	tCt/tGt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482607	56482607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	264	397	0	ENST00000267101.3:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000267101	NM_001982.3	355	aCc/aTc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354339	354339	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	306	348	0	ENST00000262320.3:c.1219G>T	p.Glu407Ter	p.E407*	ENST00000262320	NM_003502.3	407	Gag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604754	48604754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	158	393	0	ENST00000342988.3:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000342988	NM_005359.5	526	Gaa/Caa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412755	63412755	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	119	204	0	ENST00000330258.3:c.412G>T	p.Glu138Ter	p.E138*	ENST00000330258	NM_152424.3	138	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	416	466	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11297992	11297992	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	446	456	0	ENST00000361445.4:c.2116G>C	p.Glu706Gln	p.E706Q	ENST00000361445	NM_004958.3	706	Gag/Cag																																																																														
RB1	5925	MSKCC	GRCh37	13	48919328	48919444	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGGAAAGGTAAAGTAAACATTTTATTAGGTTTACACTCTGATTTTTTATGTCATTGTTCACAATTAGATTCTGGGAATTATTTAACACATTTAGTAAAGTTAGTAAGTATTAATTC	TTGGAAAGGTAAAGTAAACATTTTATTAGGTTTACACTCTGATTTTTTATGTCATTGTTCACAATTAGATTCTGGGAATTATTTAACACATTTAGTAAAGTTAGTAAGTATTAATTC	-			P-0010537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	84	404	0	ENST00000267163.4:c.495_500+111del		p.X165_splice	ENST00000267163	NM_000321.2	165																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	772	403	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	722	523	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371683	55371683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	96	463	0	ENST00000297316.4:c.373C>T	p.Arg125Cys	p.R125C	ENST00000297316	NM_022454.3	125	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112116494	112116494	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	270	311	0	ENST00000257430.4:c.539T>G	p.Leu180Ter	p.L180*	ENST00000257430	NM_000038.5	180	tTa/tGa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459462	50459462	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	568	364	0	ENST00000331340.3:c.751G>T	p.Glu251Ter	p.E251*	ENST00000331340	NM_006060.4	251	Gaa/Taa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342789	87342789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	473	452	0	ENST00000277120.3:c.1074C>G	p.Asp358Glu	p.D358E	ENST00000277120		358	gaC/gaG																																																																														
HRAS	3265	MSKCC	GRCh37	11	532715	532715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	775	683	0	ENST00000311189.7:c.491G>A	p.Arg164Gln	p.R164Q	ENST00000311189		164	cGg/cAg																																																																														
ATM	472	MSKCC	GRCh37	11	108143448	108143448	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	303	624	0	ENST00000278616.4:c.3154-1G>A		p.X1052_splice	ENST00000278616	NM_000051.3	1052																																																																															
ATM	472	MSKCC	GRCh37	11	108163500	108163500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	230	483	0	ENST00000278616.4:c.4591C>T	p.Gln1531Ter	p.Q1531*	ENST00000278616	NM_000051.3	1531	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	119	192	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	295	570	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	189	356	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	197	347	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120668	115120668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1483	272	556	3	ENST00000257566.3:c.338G>A	p.Trp113Ter	p.W113*	ENST00000257566	NM_016569.3	113	tGg/tAg																																																																														
BARD1	580	MSKCC	GRCh37	2	215674175	215674175	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs71579841		P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	181	393	1	ENST00000260947.4:c.119C>T	p.Ala40Val	p.A40V	ENST00000260947	NM_000465.2	40	gCg/gTg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940889	49940889	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144338909		P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1412	222	657	0	ENST00000296474.3:c.154G>A	p.Gly52Arg	p.G52R	ENST00000296474	NM_002447.2	52	Gga/Aga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878785	151878785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	174	405	1	ENST00000262189.6:c.6160C>T	p.Gln2054Ter	p.Q2054*	ENST00000262189	NM_170606.2	2054	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717741	89717741	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	128	215	2	ENST00000371953.3:c.766G>T	p.Glu256Ter	p.E256*	ENST00000371953	NM_000314.4	256	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416554	49416554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	181	360	0	ENST00000301067.7:c.16157C>T	p.Ser5386Phe	p.S5386F	ENST00000301067	NM_003482.3	5386	tCt/tTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832025	72832025	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0011400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1341	301	658	0	ENST00000268489.5:c.4556C>G	p.Ser1519Ter	p.S1519*	ENST00000268489	NM_006885.3	1519	tCa/tGa																																																																														
SYK	6850	MSKCC	GRCh37	9	93650881	93650881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200438123		P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	147	230	0	ENST00000375746.1:c.1807G>A	p.Asp603Asn	p.D603N	ENST00000375746	NM_001174167.1	603	Gat/Aat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146616	55146616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34392012		P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	192	376	0	ENST00000257290.5:c.2290C>T	p.Arg764Cys	p.R764C	ENST00000257290	NM_006206.4	764	Cgt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857524	9857524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	147	392	1	ENST00000330684.3:c.3877G>A	p.Asp1293Asn	p.D1293N	ENST00000330684	NM_001134407.1	1293	Gat/Aat																																																																														
PGR	5241	MSKCC	GRCh37	11	100912815	100912815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	226	607	2	ENST00000325455.5:c.2507G>A	p.Arg836Gln	p.R836Q	ENST00000325455	NM_001202474.3	836	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47144880	47144880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	192	414	1	ENST00000409792.3:c.4873C>T	p.Arg1625Cys	p.R1625C	ENST00000409792	NM_014159.6	1625	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633380	8633380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	232	477	0	ENST00000356435.5:c.289G>A	p.Glu97Lys	p.E97K	ENST00000356435		97	Gaa/Aaa																																																																														
BLM	641	MSKCC	GRCh37	15	91312725	91312725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	226	475	1	ENST00000355112.3:c.2464C>T	p.Pro822Ser	p.P822S	ENST00000355112	NM_000057.2	822	Cct/Tct																																																																														
ATRX	546	MSKCC	GRCh37	X	76938229	76938229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	202	537	0	ENST00000373344.5:c.2519G>A	p.Arg840Lys	p.R840K	ENST00000373344	NM_000489.3	840	aGa/aAa																																																																														
ATR	545	MSKCC	GRCh37	3	142188237	142188237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	126	328	1	ENST00000350721.4:c.6494C>T	p.Ala2165Val	p.A2165V	ENST00000350721	NM_001184.3	2165	gCc/gTc																																																																														
ATM	472	MSKCC	GRCh37	11	108203492	108203492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138941496		P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	100	192	0	ENST00000278616.4:c.7792C>T	p.Arg2598Ter	p.R2598*	ENST00000278616	NM_000051.3	2598	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420005	41420005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	385	545	1	ENST00000373198.4:c.316C>T	p.His106Tyr	p.H106Y	ENST00000373198	NM_133170.3	106	Cat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633430	8633430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	180	410	1	ENST00000356435.5:c.239C>T	p.Ser80Leu	p.S80L	ENST00000356435		80	tCa/tTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	239	592	2	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212288993	212288993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	211	441	0	ENST00000342788.4:c.2753G>A	p.Gly918Glu	p.G918E	ENST00000342788	NM_005235.2	918	gGa/gAa																																																																														
IL10	3586	MSKCC	GRCh37	1	206945627	206945627	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	194	510	0	ENST00000423557.1:c.154A>C	p.Lys52Gln	p.K52Q	ENST00000423557	NM_000572.2	52	Aag/Cag																																																																														
ALK	238	MSKCC	GRCh37	2	29455248	29455248	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	184	539	0	ENST00000389048.3:c.2554A>G	p.Lys852Glu	p.K852E	ENST00000389048	NM_004304.4	852	Aag/Gag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033346	48033346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	138	346	0	ENST00000234420.5:c.3650G>A	p.Arg1217Lys	p.R1217K	ENST00000234420	NM_000179.2	1217	aGa/aAa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713850	30713850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	143	435	0	ENST00000359013.4:c.1250C>T	p.Thr417Ile	p.T417I	ENST00000359013	NM_001024847.2	417	aCc/aTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189526242	189526242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	195	559	0	ENST00000264731.3:c.506C>T	p.Thr169Ile	p.T169I	ENST00000264731	NM_003722.4	169	aCc/aTc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612281	189612281	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	92	226	0	ENST00000264731.3:c.2033A>T	p.Glu678Val	p.E678V	ENST00000264731	NM_003722.4	678	gAg/gTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55946259	55946259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	183	418	0	ENST00000263923.4:c.3920C>T	p.Ser1307Phe	p.S1307F	ENST00000263923	NM_002253.2	1307	tCc/tTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55976644	55976644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	224	539	0	ENST00000263923.4:c.1181G>A	p.Gly394Glu	p.G394E	ENST00000263923	NM_002253.2	394	gGa/gAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106155943	106155943	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	108	255	1	ENST00000380013.4:c.844T>A	p.Ser282Thr	p.S282T	ENST00000380013	NM_001127208.2	282	Tct/Act																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56171012	56171012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	66	295	0	ENST00000399503.3:c.1840C>T	p.Pro614Ser	p.P614S	ENST00000399503	NM_005921.1	614	Ccg/Tcg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751143	57751143	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	113	292	0	ENST00000274289.3:c.1724T>A	p.Phe575Tyr	p.F575Y	ENST00000274289	NM_006622.3	575	tTt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112162829	112162829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	111	336	0	ENST00000257430.4:c.1433T>C	p.Leu478Ser	p.L478S	ENST00000257430	NM_000038.5	478	tTa/tCa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057594	180057594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	203	707	0	ENST00000261937.6:c.361G>A	p.Glu121Lys	p.E121K	ENST00000261937	NM_182925.4	121	Gag/Aag																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536095	106536095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	157	396	0	ENST00000369096.4:c.62C>T	p.Ser21Phe	p.S21F	ENST00000369096	NM_001198.3	21	tCc/tTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552990	106552990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	176	472	1	ENST00000369096.4:c.955G>A	p.Glu319Lys	p.E319K	ENST00000369096	NM_001198.3	319	Gag/Aag																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554847	106554847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	105	317	0	ENST00000369096.4:c.1964G>A	p.Gly655Glu	p.G655E	ENST00000369096	NM_001198.3	655	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638350	117638350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	183	503	1	ENST00000368508.3:c.6091G>A	p.Gly2031Arg	p.G2031R	ENST00000368508	NM_002944.2	2031	Gga/Aga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163826	152163826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	183	404	1	ENST00000206249.3:c.547C>T	p.Arg183Cys	p.R183C	ENST00000206249	NM_000125.3	183	Cgc/Tgc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405920	157405920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	145	401	0	ENST00000346085.5:c.2162C>T	p.Ser721Phe	p.S721F	ENST00000346085	NM_020732.3	721	tCc/tTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987418	2987418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	195	416	0	ENST00000396946.4:c.11G>A	p.Gly4Glu	p.G4E	ENST00000396946	NM_032415.4	4	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151919124	151919124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	114	341	0	ENST00000262189.6:c.3461C>T	p.Ser1154Leu	p.S1154L	ENST00000262189	NM_170606.2	1154	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949141	151949141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	168	406	0	ENST00000262189.6:c.1504C>T	p.His502Tyr	p.H502Y	ENST00000262189	NM_170606.2	502	Cat/Tat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078391	5078391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	150	401	0	ENST00000381652.3:c.2078C>T	p.Pro693Leu	p.P693L	ENST00000381652	NM_004972.3	693	cCt/cTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521397	8521397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	203	520	0	ENST00000356435.5:c.841G>A	p.Asp281Asn	p.D281N	ENST00000356435		281	Gat/Aat																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87338515	87338515	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139913267		P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	192	483	1	ENST00000277120.3:c.611C>T	p.Pro204Leu	p.P204L	ENST00000277120		204	cCt/cTt																																																																														
SYK	6850	MSKCC	GRCh37	9	93606271	93606271	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	188	563	1	ENST00000375746.1:c.91C>T	p.Gln31Ter	p.Q31*	ENST00000375746	NM_001174167.1	31	Cag/Tag																																																																														
RET	5979	MSKCC	GRCh37	10	43604515	43604515	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	204	485	0	ENST00000355710.3:c.1100A>G	p.Asn367Ser	p.N367S	ENST00000355710	NM_020975.4	367	aAc/aGc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852437	63852437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	221	438	0	ENST00000279873.7:c.3215C>T	p.Pro1072Leu	p.P1072L	ENST00000279873	NM_032199.2	1072	cCc/cTc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104377094	104377094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	167	500	0	ENST00000369902.3:c.1205G>A	p.Gly402Asp	p.G402D	ENST00000369902	NM_016169.3	402	gGt/gAt																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514329	69514329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	160	368	0	ENST00000294312.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000294312	NM_005117.2	118	Gaa/Aaa																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588107	69588107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	219	560	0	ENST00000168712.1:c.591G>A	p.Met197Ile	p.M197I	ENST00000168712	NM_002007.2	197	atG/atA																																																																														
PGR	5241	MSKCC	GRCh37	11	100920729	100920729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	286	707	0	ENST00000325455.5:c.2419G>A	p.Glu807Lys	p.E807K	ENST00000325455	NM_001202474.3	807	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118354977	118354977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	133	399	0	ENST00000534358.1:c.4166C>T	p.Ser1389Phe	p.S1389F	ENST00000534358	NM_005933.3	1389	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443490	49443490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	125	372	0	ENST00000301067.7:c.3881C>T	p.Ser1294Phe	p.S1294F	ENST00000301067	NM_003482.3	1294	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445406	49445406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	127	419	0	ENST00000301067.7:c.2060C>T	p.Ser687Leu	p.S687L	ENST00000301067	NM_003482.3	687	tCa/tTa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858649	57858649	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	203	533	0	ENST00000228682.2:c.387G>A	p.Met129Ile	p.M129I	ENST00000228682	NM_005269.2	129	atG/atA																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416662	121416662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	150	513	0	ENST00000257555.6:c.91G>A	p.Gly31Ser	p.G31S	ENST00000257555		31	Ggt/Agt																																																																														
MGA	23269	MSKCC	GRCh37	15	42052602	42052602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	321	728	2	ENST00000219905.7:c.7273C>T	p.Arg2425Cys	p.R2425C	ENST00000219905	NM_001164273.1	2425	Cgc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857452	9857452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	124	437	0	ENST00000330684.3:c.3949G>A	p.Glu1317Lys	p.E1317K	ENST00000330684	NM_001134407.1	1317	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934864	9934864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	267	581	0	ENST00000330684.3:c.1426G>A	p.Asp476Asn	p.D476N	ENST00000330684	NM_001134407.1	476	Gac/Aac																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14024649	14024649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202243691		P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	195	463	0	ENST00000311895.7:c.875G>A	p.Arg292Gln	p.R292Q	ENST00000311895	NM_005236.2	292	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29677330	29677330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	105	318	0	ENST00000358273.4:c.7451C>T	p.Ser2484Phe	p.S2484F	ENST00000358273	NM_001042492.2	2484	tCc/tTc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30293176	30293176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	144	258	1	ENST00000322652.5:c.466C>T	p.His156Tyr	p.H156Y	ENST00000322652	NM_015355.2	156	Cat/Tat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292531	15292531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	190	563	0	ENST00000263388.2:c.2648G>A	p.Arg883Gln	p.R883Q	ENST00000263388	NM_000435.2	883	cGa/cAa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15378278	15378278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1228	320	799	0	ENST00000263377.2:c.508G>A	p.Glu170Lys	p.E170K	ENST00000263377	NM_058243.2	170	Gag/Aag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278025	18278025	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	150	404	2	ENST00000222254.8:c.1645C>T	p.Gln549Ter	p.Q549*	ENST00000222254	NM_005027.3	549	Cag/Tag																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257121	19257121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	82	289	0	ENST00000162023.5:c.842C>T	p.Ser281Leu	p.S281L	ENST00000162023		281	tCg/tTg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523368	9523368	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs6118639		P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	150	440	0	ENST00000353224.5:c.1870-1G>A		p.X624_splice	ENST00000353224	NM_177990.2	624																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561097	9561097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	117	308	0	ENST00000353224.5:c.685G>A	p.Asp229Asn	p.D229N	ENST00000353224	NM_177990.2	229	Gat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739023	40739023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	313	412	0	ENST00000373198.4:c.3261G>C	p.Gln1087His	p.Q1087H	ENST00000373198	NM_133170.3	1087	caG/caC																																																																														
ATRX	546	MSKCC	GRCh37	X	76875904	76875904	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	250	565	1	ENST00000373344.5:c.5231T>A	p.Ile1744Asn	p.I1744N	ENST00000373344	NM_000489.3	1744	aTt/aAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76939409	76939409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	239	594	0	ENST00000373344.5:c.1339G>A	p.Glu447Lys	p.E447K	ENST00000373344	NM_000489.3	447	Gaa/Aaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185169	123185169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	141	403	0	ENST00000218089.9:c.1121G>A	p.Arg374Lys	p.R374K	ENST00000218089	NM_001042749.1	374	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577501	7577501	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0011467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	163	459	0	ENST00000269305.4:c.780del	p.Ser261ValfsTer84	p.S261Vfs*84	ENST00000269305	NM_001126112.2	260	tcC/tc																																																																														
IRF4	3662	MSKCC	GRCh37	6	393216	393216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	99	498	0	ENST00000380956.4:c.64G>C	p.Gly22Arg	p.G22R	ENST00000380956	NM_001195286.1	22	Ggg/Cgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0011537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	469	315	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174379	11174379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	511	315	0	ENST00000361445.4:c.7296G>A	p.Met2432Ile	p.M2432I	ENST00000361445	NM_004958.3	2432	atG/atA																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412187	63412187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	750	322	1	ENST00000330258.3:c.980G>A	p.Gly327Asp	p.G327D	ENST00000330258	NM_152424.3	327	gGt/gAt																																																																														
RB1	5925	MSKCC	GRCh37	13	49039133	49039134	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GA	GA	CC			P-0011537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			27	168	178	0	ENST00000267163.4:c.2212-1_2212delinsCC		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	117	427	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	61	340	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836312	89836312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	260	497	0	ENST00000389301.3:c.2437C>T	p.Pro813Ser	p.P813S	ENST00000389301	NM_000135.2	813	Cct/Tct																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175956233	175956233	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	59	307	0	ENST00000367669.3:c.1979A>C	p.Glu660Ala	p.E660A	ENST00000367669	NM_022457.5	660	gAa/gCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879559	151879559	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	95	304	0	ENST00000262189.6:c.5386C>T	p.Gln1796Ter	p.Q1796*	ENST00000262189	NM_170606.2	1796	Cag/Tag																																																																														
BARD1	580	MSKCC	GRCh37	2	215645884	215645921	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTTGCTTAGATTCCTCTTTGGAGTCAAATTCACCAT	CTTTTGCTTAGATTCCTCTTTGGAGTCAAATTCACCAT	-			P-0011555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	22	687	0	ENST00000260947.4:c.677_714del	p.Asp226AlafsTer6	p.D226Afs*6	ENST00000260947	NM_000465.2	226	gATGGTGAATTTGACTCCAAAGAGGAATCTAAGCAAAAG/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057796	27057796	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1050	112	1192	1	ENST00000324856.7:c.1504C>T	p.Gln502Ter	p.Q502*	ENST00000324856	NM_006015.4	502	Cag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857968	9857968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			759	366	716	2	ENST00000330684.3:c.3433G>A	p.Val1145Met	p.V1145M	ENST00000330684	NM_001134407.1	1145	Gtg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984837	72984837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012048-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			553	176	825	0	ENST00000268489.5:c.2747G>A	p.Arg916Gln	p.R916Q	ENST00000268489	NM_006885.3	916	cGg/cAg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0012599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	320	423	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	155	327	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867518	35867518	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	187	254	0	ENST00000303115.3:c.332T>C	p.Val111Ala	p.V111A	ENST00000303115	NM_002185.3	111	gTt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	238	279	0	ENST00000269305.4:c.542del	p.Arg181ProfsTer66	p.R181Pfs*66	ENST00000269305	NM_001126112.2	181	cGc/cc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910976	32910977	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1579	87	741	1	ENST00000380152.3:c.2489dup	p.Asn830LysfsTer3	p.N830Kfs*3	ENST00000380152		828	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	405	539	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
GREM1	26585	MSKCC	GRCh37	15	33023055	33023055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	169	669	0	ENST00000300177.4:c.164C>T	p.Ser55Phe	p.S55F	ENST00000300177	NM_001191322.1	55	tCc/tTc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600324	10600324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	377	561	0	ENST00000171111.5:c.1531G>T	p.Gly511Cys	p.G511C	ENST00000171111	NM_203500.1	511	Ggc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092801	27092801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	166	579	0	ENST00000324856.7:c.2822T>C	p.Ile941Thr	p.I941T	ENST00000324856	NM_006015.4	941	aTc/aCc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834576	156834576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	168	653	1	ENST00000524377.1:c.344C>A	p.Pro115His	p.P115H	ENST00000524377	NM_002529.3	115	cCt/cAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724530	162724530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	131	508	0	ENST00000367921.3:c.302G>T	p.Gly101Val	p.G101V	ENST00000367921	NM_006182.2	101	gGg/gTg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158637113	158637113	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	428	681	0	ENST00000263640.3:c.68-1G>C		p.X23_splice	ENST00000263640	NM_001105.4	23																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198265576	198265576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	192	686	1	ENST00000335508.6:c.2581G>T	p.Ala861Ser	p.A861S	ENST00000335508	NM_012433.2	861	Gcc/Tcc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940103	49940103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	547	802	0	ENST00000296474.3:c.940G>T	p.Gly314Cys	p.G314C	ENST00000296474	NM_002447.2	314	Ggc/Tgc																																																																														
PARK2	5071	MSKCC	GRCh37	6	163148700	163148700	+	start_lost	Translation_Start_Site	SNP	T	T	C	rs772786691		P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	373	618	0	ENST00000366898.1:c.1A>G	p.Met1?	p.M1?	ENST00000366898	NM_004562.2	1	Atg/Gtg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509208	106509208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	188	596	1	ENST00000359195.3:c.1202C>A	p.Pro401His	p.P401H	ENST00000359195	NM_002649.2	401	cCc/cAc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5044488	5044488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	354	536	3	ENST00000381652.3:c.436G>T	p.Asp146Tyr	p.D146Y	ENST00000381652	NM_004972.3	146	Gat/Tat																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126786	5126786	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	236	393	0	ENST00000381652.3:c.3394G>T	p.Gly1132Ter	p.G1132*	ENST00000381652	NM_004972.3	1132	Gga/Tga																																																																														
CD274	29126	MSKCC	GRCh37	9	5463076	5463076	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	197	320	0	ENST00000381577.3:c.637A>T	p.Arg213Ter	p.R213*	ENST00000381577	NM_014143.3	213	Aga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331695	8331695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	479	572	0	ENST00000356435.5:c.5421C>A	p.Asp1807Glu	p.D1807E	ENST00000356435		1807	gaC/gaA																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912159	114912159	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	304	927	0	ENST00000543371.1:c.1229A>T	p.His410Leu	p.H410L	ENST00000543371	NM_001198531.1	410	cAt/cTt																																																																														
WT1	7490	MSKCC	GRCh37	11	32414301	32414301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	100	449	1	ENST00000332351.3:c.1250G>T	p.Gly417Val	p.G417V	ENST00000332351	NM_024426.4	417	gGt/gTt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610261	81610261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	147	478	0	ENST00000298171.2:c.1859C>A	p.Thr620Asn	p.T620N	ENST00000298171	NM_000369.2	620	aCc/aAc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66679734	66679734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	218	635	0	ENST00000307102.5:c.49G>T	p.Gly17Cys	p.G17C	ENST00000307102	NM_002755.3	17	Ggc/Tgc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370277	40370277	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	813	945	3	ENST00000293328.3:c.1061T>C	p.Leu354Pro	p.L354P	ENST00000293328	NM_012448.3	354	cTg/cCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288499	15288499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	64	267	0	ENST00000263388.2:c.4240G>T	p.Gly1414Cys	p.G1414C	ENST00000263388	NM_000435.2	1414	Ggc/Tgc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024416	31024416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	395	579	0	ENST00000375687.4:c.3901G>A	p.Gly1301Arg	p.G1301R	ENST00000375687	NM_015338.5	1301	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714442	40714442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	230	492	0	ENST00000373198.4:c.3955C>A	p.Gln1319Lys	p.Q1319K	ENST00000373198	NM_133170.3	1319	Cag/Aag																																																																														
FH	2271	MSKCC	GRCh37	1	241675375	241675376	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1359	153	553	0	ENST00000366560.3:c.446_447del	p.Thr149LysfsTer6	p.T149Kfs*6	ENST00000366560	NM_000143.3	149	aCA/a																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494633	2494633	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	161	590	0	ENST00000355716.4:c.773del	p.Leu258ArgfsTer44	p.L258Rfs*44	ENST00000355716	NM_003820.2	258	cTg/cg																																																																														
SYK	6850	MSKCC	GRCh37	9	93624488	93624489	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GA	GA	TT			P-0012736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	206	412	0	ENST00000375746.1:c.579_580delinsTT	p.Ile194Phe	p.I194F	ENST00000375746	NM_001174167.1	193	ctGAtc/ctTTtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	665	544	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149435843	149435843	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	361	553	0	ENST00000286301.3:c.2381T>C	p.Ile794Thr	p.I794T	ENST00000286301	NM_005211.3	794	aTt/aCt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975450	13975450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	247	372	0	ENST00000405192.2:c.437C>T	p.Ser146Phe	p.S146F	ENST00000405192	NM_001163147.1	146	tCc/tTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41276094	41276094	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144792613		P-0012808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	568	387	0	ENST00000357654.3:c.20G>A	p.Arg7His	p.R7H	ENST00000357654	NM_007294.3	7	cGc/cAc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260129	19260129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	412	539	0	ENST00000162023.5:c.164T>C	p.Phe55Ser	p.F55S	ENST00000162023		55	tTc/tCc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31385045	31385045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	113	536	0	ENST00000328111.2:c.1430A>G	p.Tyr477Cys	p.Y477C	ENST00000328111	NM_006892.3	477	tAc/tGc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1327723	1327723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	362	579	1	ENST00000381566.1:c.158G>A	p.Arg53Lys	p.R53K	ENST00000381566		53	aGg/aAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410566	63410566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1878	502	930	1	ENST00000330258.3:c.2601C>G	p.Ser867Arg	p.S867R	ENST00000330258	NM_152424.3	867	agC/agG																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185195	123185195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	333	561	0	ENST00000218089.9:c.1147G>A	p.Glu383Lys	p.E383K	ENST00000218089	NM_001042749.1	383	Gaa/Aaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722232	176722233	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0012808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	363	641	1	ENST00000439151.2:c.7863_7864delinsTT	p.Glu2621_Gln2622delinsAspTer	p.E2621_Q2622delinsD*	ENST00000439151	NM_022455.4	2621	gaGCaa/gaTTaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	187	299	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	44	166	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	119	403	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937219	36937219	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140159756		P-0012832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1302	429	736	1	ENST00000361632.4:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000361632		367	cGg/cAg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1556	224	660	1	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030463	47030463	+	intron_variant	Intron	SNP	C	C	T			P-0012832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1246	193	640	1	ENST00000329236.7:c.201+1566C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89259598	89259598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	61	252	0	ENST00000336596.2:c.742G>C	p.Gly248Arg	p.G248R	ENST00000336596	NM_005233.5	248	Ggc/Cgc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674230	117674230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1406	215	674	2	ENST00000368508.3:c.4244G>A	p.Gly1415Glu	p.G1415E	ENST00000368508	NM_002944.2	1415	gGg/gAg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645326	67645326	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	121	468	1	ENST00000264010.4:c.591T>A	p.Tyr197Ter	p.Y197*	ENST00000264010	NM_006565.3	197	taT/taA																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374882	45374882	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	133	538	0	ENST00000262160.6:c.961C>T	p.Arg321Ter	p.R321*	ENST00000262160	NM_005901.5	321	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727174	40727174	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200157212		P-0012832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	121	428	0	ENST00000373198.4:c.3790G>A	p.Ala1264Thr	p.A1264T	ENST00000373198	NM_133170.3	1264	Gcc/Acc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591312	67591323	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAGAGTAAGTA	GAAGAGTAAGTA	-			P-0012832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	64	322	0	ENST00000274335.5:c.1811_1814+8del		p.X604_splice	ENST00000274335		604																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27087395	27087396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	332	583	0	ENST00000324856.7:c.1970dup	p.Ser658GlufsTer18	p.S658Efs*18	ENST00000324856	NM_006015.4	657	ctg/cTtg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69218151	69218151	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			20603	1658	365	0	ENST00000462284.1:c.367G>C	p.Asp123His	p.D123H	ENST00000462284	NM_002392.5	123	Gac/Cac																																																																														
MDM2	4193	MSKCC	GRCh37	12	69218427	69218427	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			18391	1472	374	0	ENST00000462284.1:c.519G>C	p.Glu173Asp	p.E173D	ENST00000462284	NM_002392.5	173	gaG/gaC																																																																														
ATRX	546	MSKCC	GRCh37	X	76889088	76889088	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	539	751	1	ENST00000373344.5:c.4922G>A	p.Trp1641Ter	p.W1641*	ENST00000373344	NM_000489.3	1641	tGg/tAg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45377691	45377692	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	29	263	0	ENST00000262160.6:c.737dup	p.Ala247SerfsTer12	p.A247Sfs*12	ENST00000262160	NM_005901.5	246	cca/ccCa																																																																														
KDR	3791	MSKCC	GRCh37	4	55961103	55961103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140041720		P-0012918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	245	585	2	ENST00000263923.4:c.2837G>A	p.Arg946His	p.R946H	ENST00000263923	NM_002253.2	946	cGt/cAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0012995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	173	540	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061147	38061203	+	inframe_deletion	In_Frame_Del	DEL	CCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGG	CCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGG	-			P-0012995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	360	213	0	ENST00000250448.2:c.786_842del	p.Gln263_Gly281del	p.Q263_G281del	ENST00000250448	NM_004496.3	262	cgCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGa/cga																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923408	36923408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	193	652	0	ENST00000358127.4:c.854C>A	p.Thr285Asn	p.T285N	ENST00000358127	NM_001280556.1	285	aCc/aAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135785971	135785971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	259	578	1	ENST00000298552.3:c.1250C>T	p.Thr417Ile	p.T417I	ENST00000298552	NM_001162426.1	417	aCa/aTa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	247	764	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11199604	11199604	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	283	767	0	ENST00000361445.4:c.4984A>C	p.Lys1662Gln	p.K1662Q	ENST00000361445	NM_004958.3	1662	Aag/Cag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808940	3808940	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	259	740	0	ENST00000262367.5:c.3284T>C	p.Met1095Thr	p.M1095T	ENST00000262367	NM_004380.2	1095	aTg/aCg																																																																														
NBN	4683	MSKCC	GRCh37	8	90958378	90958379	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0013000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	450	508	0	ENST00000265433.3:c.2059_2060inv	p.Lys687Leu	p.K687L	ENST00000265433	NM_002485.4	687	AAa/TTa																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0013007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	271	627	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
CBL	867	MSKCC	GRCh37	11	119149144	119149285	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAATGTATTTTCTAGTAGATTAATATTTTAAGTATTTTCAGATGCATCTGTTACTATCTTTTGCTTCTTCTGCAGGAATCAGAAGGTCAGGGCTGTCCTTTCTGCCGATGTGAAATTAAAGGTACTGAACCCATCGTGGTA	GAAATGTATTTTCTAGTAGATTAATATTTTAAGTATTTTCAGATGCATCTGTTACTATCTTTTGCTTCTTCTGCAGGAATCAGAAGGTCAGGGCTGTCCTTTCTGCCGATGTGAAATTAAAGGTACTGAACCCATCGTGGTA	-			P-0013007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	68	247	0	ENST00000264033.4:c.1228-74_1295del		p.X410_splice	ENST00000264033	NM_005188.3	410																																																																															
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	127	384	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	147	318	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	222	367	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448468	89448468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	145	322	0	ENST00000336596.2:c.1432C>A	p.Gln478Lys	p.Q478K	ENST00000336596	NM_005233.5	478	Cag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253787	153253787	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	171	422	1	ENST00000281708.4:c.946G>T	p.Glu316Ter	p.E316*	ENST00000281708	NM_033632.3	316	Gaa/Taa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671613	67671624	+	inframe_deletion	In_Frame_Del	DEL	AGACCAGAATAC	AGACCAGAATAC	-			P-0013088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	64	413	0	ENST00000264010.4:c.2024_2035del	p.Asp675_Thr678del	p.D675_T678del	ENST00000264010	NM_006565.3	674	gaAGACCAGAATACa/gaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	81	327	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037486	12037486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1259	132	511	0	ENST00000396373.4:c.1117C>T	p.Pro373Ser	p.P373S	ENST00000396373	NM_001987.4	373	Ccc/Tcc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	105	415	0	ENST00000375023.3:c.5506G>C	p.Glu1836Gln	p.E1836Q	ENST00000375023	NM_004557.3	1836	Gag/Cag																																																																														
RIT1	6016	MSKCC	GRCh37	1	155880244	155880244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	475	589	0	ENST00000368323.3:c.160A>T	p.Ile54Phe	p.I54F	ENST00000368323	NM_006912.5	54	Att/Ttt																																																																														
BARD1	580	MSKCC	GRCh37	2	215645922	215645922	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1314	445	1010	0	ENST00000260947.4:c.676G>C	p.Asp226His	p.D226H	ENST00000260947	NM_000465.2	226	Gat/Cat																																																																														
ATR	545	MSKCC	GRCh37	3	142253924	142253924	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	160	473	0	ENST00000350721.4:c.3943C>T	p.Gln1315Ter	p.Q1315*	ENST00000350721	NM_001184.3	1315	Cag/Tag																																																																														
ATR	545	MSKCC	GRCh37	3	142272776	142272776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	186	643	1	ENST00000350721.4:c.2423C>T	p.Thr808Ile	p.T808I	ENST00000350721	NM_001184.3	808	aCt/aTt																																																																														
SDHA	6389	MSKCC	GRCh37	5	240515	240515	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	12	71	0	ENST00000264932.6:c.1475C>G	p.Ser492Cys	p.S492C	ENST00000264932	NM_004168.2	492	tCt/tGt																																																																														
EED	8726	MSKCC	GRCh37	11	85989514	85989514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1324	204	767	0	ENST00000263360.6:c.1273C>G	p.Leu425Val	p.L425V	ENST00000263360	NM_003797.3	425	Ctt/Gtt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832751	3832751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1337	195	725	1	ENST00000262367.5:c.1507C>T	p.Gln503Ter	p.Q503*	ENST00000262367	NM_004380.2	503	Cag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032120	10032120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	114	776	0	ENST00000330684.3:c.703G>A	p.Glu235Lys	p.E235K	ENST00000330684	NM_001134407.1	235	Gag/Aag																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041626	14041626	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1349	172	829	0	ENST00000311895.7:c.2173G>C	p.Glu725Gln	p.E725Q	ENST00000311895	NM_005236.2	725	Gag/Cag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828615	72828615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1778	246	1279	0	ENST00000268489.5:c.7966C>T	p.Leu2656Phe	p.L2656F	ENST00000268489	NM_006885.3	2656	Ctc/Ttc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50917056	50917056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2972	214	1116	1	ENST00000440232.2:c.2308G>A	p.Glu770Lys	p.E770K	ENST00000440232	NM_002691.3	770	Gag/Aag																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22160227	22160227	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	159	719	0	ENST00000215832.6:c.404G>C	p.Arg135Thr	p.R135T	ENST00000215832	NM_002745.4	135	aGa/aCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	213	487	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0013144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	397	684	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	614	728	0	ENST00000269305.4:c.857A>T	p.Glu286Val	p.E286V	ENST00000269305	NM_001126112.2	286	gAa/gTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411366	63411366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	589	421	2	ENST00000330258.3:c.1801C>T	p.Arg601Ter	p.R601*	ENST00000330258	NM_152424.3	601	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173429	112173429	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	161	669	0	ENST00000257430.4:c.2138C>A	p.Ser713Ter	p.S713*	ENST00000257430	NM_000038.5	713	tCa/tAa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518014	176518014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	322	794	0	ENST00000292408.4:c.512G>A	p.Arg171His	p.R171H	ENST00000292408	NM_213647.1	171	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	99	217	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	299	528	2	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466522	120466522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	312	671	0	ENST00000256646.2:c.4597G>T	p.Asp1533Tyr	p.D1533Y	ENST00000256646	NM_024408.3	1533	Gac/Tac																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460545	149460545	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	198	416	0	ENST00000286301.3:c.92T>G	p.Val31Gly	p.V31G	ENST00000286301	NM_005211.3	31	gTc/gGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151846122	151846122	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	210	477	0	ENST00000262189.6:c.12890A>T	p.Glu4297Val	p.E4297V	ENST00000262189	NM_170606.2	4297	gAg/gTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650659	18650659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	143	289	0	ENST00000266497.5:c.2870G>A	p.Cys957Tyr	p.C957Y	ENST00000266497		957	tGt/tAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426510	49426510	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	311	752	0	ENST00000301067.7:c.11978A>T	p.Gln3993Leu	p.Q3993L	ENST00000301067	NM_003482.3	3993	cAg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432165	49432165	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	228	607	0	ENST00000301067.7:c.8974G>T	p.Glu2992Ter	p.E2992*	ENST00000301067	NM_003482.3	2992	Gag/Tag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28971147	28971147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	158	425	0	ENST00000282397.4:c.1610C>A	p.Ala537Asp	p.A537D	ENST00000282397	NM_002019.4	537	gCt/gAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831324	72831324	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	258	704	1	ENST00000268489.5:c.5257C>T	p.Gln1753Ter	p.Q1753*	ENST00000268489	NM_006885.3	1753	Caa/Taa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855822	45855822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	257	535	0	ENST00000391945.4:c.1988G>A	p.Cys663Tyr	p.C663Y	ENST00000391945	NM_000400.3	663	tGt/tAt																																																																														
SRC	6714	MSKCC	GRCh37	20	36028676	36028676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	220	499	0	ENST00000358208.4:c.1018G>T	p.Val340Phe	p.V340F	ENST00000358208		340	Gtc/Ttc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	228	510	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	157	420	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870214	155870214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	376	884	0	ENST00000368323.3:c.625T>C	p.Ser209Pro	p.S209P	ENST00000368323	NM_006912.5	209	Tca/Cca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166755	32166755	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	226	533	0	ENST00000375023.3:c.4483T>C	p.Ser1495Pro	p.S1495P	ENST00000375023	NM_004557.3	1495	Tca/Cca																																																																														
PARK2	5071	MSKCC	GRCh37	6	161771189	161771189	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	235	648	1	ENST00000366898.1:c.1340G>A	p.Trp447Ter	p.W447*	ENST00000366898	NM_004562.2	447	tGg/tAg																																																																														
SMO	6608	MSKCC	GRCh37	7	128845518	128845518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	284	809	0	ENST00000249373.3:c.815C>T	p.Ala272Val	p.A272V	ENST00000249373	NM_005631.4	272	gCg/gTg																																																																														
BLM	641	MSKCC	GRCh37	15	91308526	91308526	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	312	651	0	ENST00000355112.3:c.2075G>T	p.Gly692Val	p.G692V	ENST00000355112	NM_000057.2	692	gGa/gTa																																																																														
BLM	641	MSKCC	GRCh37	15	91354511	91354511	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	195	548	0	ENST00000355112.3:c.3951G>C	p.Glu1317Asp	p.E1317D	ENST00000355112	NM_000057.2	1317	gaG/gaC																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42840450	42840450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	340	718	0	ENST00000398585.3:c.1298T>A	p.Val433Glu	p.V433E	ENST00000398585	NM_001135099.1	433	gTg/gAg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42852447	42852447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			625	385	776	0	ENST00000398585.3:c.639G>C	p.Trp213Cys	p.W213C	ENST00000398585	NM_001135099.1	213	tgG/tgC																																																																														
MSH3	4437	MSKCC	GRCh37	5	79974767	79974767	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	326	825	0	ENST00000265081.6:c.1195G>T	p.Glu399Ter	p.E399*	ENST00000265081	NM_002439.4	399	Gag/Tag																																																																														
PAX5	5079	MSKCC	GRCh37	9	37034007	37034007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013503-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	297	620	0	ENST00000358127.4:c.22C>A	p.Pro8Thr	p.P8T	ENST00000358127	NM_001280556.1	8	Ccg/Acg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	352	984	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	496	689	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164237	47164247	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTTTTTTAA	AGCTTTTTTAA	-			P-0013625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	116	468	0	ENST00000409792.3:c.1879_1889del	p.Leu627ArgfsTer2	p.L627Rfs*2	ENST00000409792	NM_014159.6	627	TTAAAAAAGCTa/a																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	2253	556	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0013709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	344	725	5	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2135246	2135246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	255	643	4	ENST00000219476.3:c.4585C>T	p.Arg1529Trp	p.R1529W	ENST00000219476	NM_000548.3	1529	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	503	607	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	202	242	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	182	96	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	252	634	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983911	2983911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	311	848	1	ENST00000396946.4:c.619C>T	p.Arg207Cys	p.R207C	ENST00000396946	NM_032415.4	207	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092947	27092947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	433	422	0	ENST00000324856.7:c.2879-1G>A		p.X960_splice	ENST00000324856	NM_006015.4	960																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36935371	36935371	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	297	826	2	ENST00000361632.4:c.1356del	p.Asn453IlefsTer8	p.N453Ifs*8	ENST00000361632		452	ccC/cc																																																																														
TET1	80312	MSKCC	GRCh37	10	70405138	70405138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	169	383	0	ENST00000373644.4:c.2652G>C	p.Arg884Ser	p.R884S	ENST00000373644	NM_030625.2	884	agG/agC																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741912	17741912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	20	40	0	ENST00000250003.3:c.583G>T	p.Gly195Cys	p.G195C	ENST00000250003	NM_002478.4	195	Ggc/Tgc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46242647	46242647	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	150	317	0	ENST00000334344.6:c.1609G>C	p.Asp537His	p.D537H	ENST00000334344	NM_152641.2	537	Gat/Cat																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865236	57865236	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	385	924	0	ENST00000228682.2:c.2713C>T	p.Gln905Ter	p.Q905*	ENST00000228682	NM_005269.2	905	Caa/Taa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130201	2130201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	264	622	0	ENST00000219476.3:c.3433C>T	p.Pro1145Ser	p.P1145S	ENST00000219476	NM_000548.3	1145	Ccg/Tcg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832577	72832577	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	309	703	0	ENST00000268489.5:c.4004C>G	p.Ser1335Cys	p.S1335C	ENST00000268489	NM_006885.3	1335	tCc/tGc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883998	37883998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	195	467	0	ENST00000269571.5:c.3469C>G	p.Leu1157Val	p.L1157V	ENST00000269571		1157	Ctg/Gtg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136182	11136182	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	358	527	0	ENST00000344626.4:c.3166G>A	p.Glu1056Lys	p.E1056K	ENST00000344626	NM_003072.3	1056	Gag/Aag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023070	31023070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	608	630	0	ENST00000375687.4:c.2555C>T	p.Ser852Leu	p.S852L	ENST00000375687	NM_015338.5	852	tCa/tTa																																																																														
ATR	545	MSKCC	GRCh37	3	142217475	142217475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	565	464	0	ENST00000350721.4:c.5522G>C	p.Arg1841Thr	p.R1841T	ENST00000350721	NM_001184.3	1841	aGa/aCa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190830	185190830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	288	599	1	ENST00000265026.3:c.1711G>A	p.Gly571Arg	p.G571R	ENST00000265026	NM_004721.4	571	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	495	612	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	30143341	30143341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	242	394	0	ENST00000389048.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000389048	NM_004304.4	62	tCg/tTg																																																																														
AXL	558	MSKCC	GRCh37	19	41727920	41727920	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138094666		P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	257	603	2	ENST00000301178.4:c.545C>T	p.Thr182Met	p.T182M	ENST00000301178	NM_021913.4	182	aCg/aTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919979	50919979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	359	414	0	ENST00000440232.2:c.3066G>T	p.Gln1022His	p.Q1022H	ENST00000440232	NM_002691.3	1022	caG/caT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257887	16257887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	70	246	0	ENST00000375759.3:c.5152G>T	p.Gly1718Cys	p.G1718C	ENST00000375759	NM_015001.2	1718	Ggt/Tgt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716239	243716239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	127	379	0	ENST00000263826.5:c.955G>C	p.Glu319Gln	p.E319Q	ENST00000263826	NM_005465.4	319	Gaa/Caa																																																																														
ATM	472	MSKCC	GRCh37	11	108121513	108121513	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	87	282	2	ENST00000278616.4:c.1321C>T	p.Gln441Ter	p.Q441*	ENST00000278616	NM_000051.3	441	Cag/Tag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498251	498251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	162	256	0	ENST00000399788.2:c.7G>T	p.Gly3Cys	p.G3C	ENST00000399788	NM_001042603.1	3	Ggc/Tgc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18466979	18466979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	432	469	0	ENST00000266497.5:c.1118C>A	p.Pro373Gln	p.P373Q	ENST00000266497		373	cCa/cAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112611	115112611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	246	286	0	ENST00000257566.3:c.1129G>T	p.Ala377Ser	p.A377S	ENST00000257566	NM_016569.3	377	Gcc/Tcc																																																																														
RB1	5925	MSKCC	GRCh37	13	49037865	49037865	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	299	369	1	ENST00000267163.4:c.2107-2A>T		p.X703_splice	ENST00000267163	NM_000321.2	703																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99251282	99251282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	109	487	1	ENST00000268035.6:c.586A>T	p.Thr196Ser	p.T196S	ENST00000268035	NM_000875.3	196	Acc/Tcc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029446	14029446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	204	365	0	ENST00000311895.7:c.1657A>G	p.Ile553Val	p.I553V	ENST00000311895	NM_005236.2	553	Atc/Gtc																																																																														
CBFB	865	MSKCC	GRCh37	16	67100669	67100669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	814	581	1	ENST00000412916.2:c.367G>T	p.Gly123Cys	p.G123C	ENST00000412916		123	Ggc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829757	72829757	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	1101	872	0	ENST00000268489.5:c.6824T>A	p.Leu2275His	p.L2275H	ENST00000268489	NM_006885.3	2275	cTc/cAc																																																																														
RARA	5914	MSKCC	GRCh37	17	38510683	38510683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	175	512	0	ENST00000254066.5:c.937G>T	p.Ala313Ser	p.A313S	ENST00000254066	NM_000964.3	313	Gcc/Tcc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58677924	58677924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	214	290	0	ENST00000305921.3:c.149C>T	p.Pro50Leu	p.P50L	ENST00000305921	NM_003620.3	50	cCt/cTt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39584351	39584351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	326	369	2	ENST00000262039.4:c.1016G>T	p.Trp339Leu	p.W339L	ENST00000262039	NM_002647.2	339	tGg/tTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	579	487	0	ENST00000171111.5:c.1249G>T	p.Gly417Trp	p.G417W	ENST00000171111	NM_203500.1	417	Ggg/Tgg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383080	42383080	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	547	604	1	ENST00000221972.3:c.100T>A	p.Trp34Arg	p.W34R	ENST00000221972	NM_021601.3	34	Tgg/Agg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659952	227659952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	276	700	1	ENST00000305123.5:c.3503G>T	p.Gly1168Val	p.G1168V	ENST00000305123	NM_005544.2	1168	gGg/gTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770585	40770585	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	394	479	0	ENST00000373198.4:c.2797A>C	p.Asn933His	p.N933H	ENST00000373198	NM_133170.3	933	Aat/Cat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944469	40944470	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	489	632	1	ENST00000373198.4:c.2032_2033delinsAT	p.Pro678Ile	p.P678I	ENST00000373198	NM_133170.3	678	CCa/ATa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264792	46264792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1630	720	893	1	ENST00000371998.3:c.1662G>A	p.Met554Ile	p.M554I	ENST00000371998		554	atG/atA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163617	47163617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	311	311	0	ENST00000409792.3:c.2509G>C	p.Asp837His	p.D837H	ENST00000409792	NM_014159.6	837	Gat/Cat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55153655	55153655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	385	661	0	ENST00000257290.5:c.2621C>T	p.Thr874Ile	p.T874I	ENST00000257290	NM_006206.4	874	aCa/aTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155207	55155207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	132	501	0	ENST00000257290.5:c.2806G>T	p.Glu936Ter	p.E936*	ENST00000257290	NM_006206.4	936	Gag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249427	153249427	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	194	577	1	ENST00000281708.4:c.1351G>T	p.Gly451Ter	p.G451*	ENST00000281708	NM_033632.3	451	Gga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35860999	35860999	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	280	392	0	ENST00000303115.3:c.128A>G	p.Tyr43Cys	p.Y43C	ENST00000303115	NM_002185.3	43	tAt/tGt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441079	149441079	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	163	761	0	ENST00000286301.3:c.1833del	p.Lys612ArgfsTer4	p.K612Rfs*4	ENST00000286301	NM_005211.3	611	ctG/ct																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449484	149449484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	136	529	0	ENST00000286301.3:c.1462C>A	p.His488Asn	p.H488N	ENST00000286301	NM_005211.3	488	Cac/Aac																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520274	176520275	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	83	413	1	ENST00000292408.4:c.1193_1194delinsTT	p.Arg398Leu	p.R398L	ENST00000292408	NM_213647.1	398	cGG/cTT																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201868	152201868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	316	357	0	ENST00000206249.3:c.722G>T	p.Arg241Leu	p.R241L	ENST00000206249	NM_000125.3	241	cGg/cTg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152382244	152382244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	406	404	0	ENST00000206249.3:c.1354A>G	p.Ile452Val	p.I452V	ENST00000206249	NM_000125.3	452	Att/Gtt																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683682	162683682	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	243	535	0	ENST00000366898.1:c.287A>T	p.Glu96Val	p.E96V	ENST00000366898	NM_004562.2	96	gAg/gTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81346629	81346629	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	517	493	1	ENST00000222390.5:c.1324A>T	p.Asn442Tyr	p.N442Y	ENST00000222390	NM_000601.4	442	Aat/Tat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515195	106515195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	300	436	1	ENST00000359195.3:c.2338C>A	p.Pro780Thr	p.P780T	ENST00000359195	NM_002649.2	780	Ccc/Acc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523498	106523498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	223	341	0	ENST00000359195.3:c.2650G>C	p.Asp884His	p.D884H	ENST00000359195	NM_002649.2	884	Gac/Cac																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38282168	38282168	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1415	79	442	0	ENST00000425967.3:c.888A>T	p.Lys296Asn	p.K296N	ENST00000425967	NM_001174067.1	296	aaA/aaT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341122	8341122	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	133	464	0	ENST00000356435.5:c.5094T>A	p.Asp1698Glu	p.D1698E	ENST00000356435		1698	gaT/gaA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517846	8517846	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	179	562	0	ENST00000356435.5:c.1543+2T>A		p.X515_splice	ENST00000356435		515																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934060	39934060	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	315	671	0	ENST00000378444.4:c.539A>G	p.Asn180Ser	p.N180S	ENST00000378444	NM_001123385.1	180	aAc/aGc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934290	39934290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	370	750	0	ENST00000378444.4:c.309G>T	p.Glu103Asp	p.E103D	ENST00000378444	NM_001123385.1	103	gaG/gaT																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44879967	44879967	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	350	528	0	ENST00000377967.4:c.556A>T	p.Ser186Cys	p.S186C	ENST00000377967	NM_021140.2	186	Agt/Tgt																																																																														
ARAF	369	MSKCC	GRCh37	X	47422634	47422634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	351	797	1	ENST00000377045.4:c.106C>G	p.Arg36Gly	p.R36G	ENST00000377045	NM_001654.4	36	Cgg/Ggg																																																																														
ARAF	369	MSKCC	GRCh37	X	47430351	47430351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	291	758	2	ENST00000377045.4:c.1626G>T	p.Met542Ile	p.M542I	ENST00000377045	NM_001654.4	542	atG/atT																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53250099	53250099	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	362	610	0	ENST00000375401.3:c.151-1G>T		p.X51_splice	ENST00000375401	NM_004187.3	51																																																																															
AMER1	139285	MSKCC	GRCh37	X	63410342	63410342	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	345	830	0	ENST00000330258.3:c.2825G>C	p.Arg942Pro	p.R942P	ENST00000330258	NM_152424.3	942	cGa/cCa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	651	574	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347124	89347128	+	frameshift_variant	Frame_Shift_Del	DEL	GACGG	GACGG	-			P-0013877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	147	899	0	ENST00000301030.4:c.5822_5826del	p.Ala1941AspfsTer7	p.A1941Dfs*7	ENST00000301030	NM_001256183.1	1941	gCCGTC/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	352	680	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916836	178916836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	618	1545	0	ENST00000263967.3:c.223C>G	p.Gln75Glu	p.Q75E	ENST00000263967	NM_006218.2	75	Caa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	382	749	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
APC	324	MSKCC	GRCh37	5	112175636	112175636	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	390	837	0	ENST00000257430.4:c.4346del	p.Lys1449SerfsTer24	p.K1449Sfs*24	ENST00000257430	NM_000038.5	1449	Aag/ag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	217	481	0	ENST00000342988.3:c.1255G>A	p.Gly419Arg	p.G419R	ENST00000342988	NM_005359.5	419	Ggg/Agg																																																																														
APC	324	MSKCC	GRCh37	5	112164585	112164585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	160	364	0	ENST00000257430.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tgG/tgA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992076	72992076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	392	1031	1	ENST00000268489.5:c.1969G>A	p.Gly657Ser	p.G657S	ENST00000268489	NM_006885.3	657	Ggc/Agc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931925	39931925	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TTT			P-0013881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	320	792	0	ENST00000378444.4:c.2674delinsAAA	p.Leu892LysfsTer2	p.L892Kfs*2	ENST00000378444	NM_001123385.1	892	Cta/AAAta																																																																														
RAC1	5879	MSKCC	GRCh37	7	6414400	6414400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	326	267	0	ENST00000356142.4:c.34G>A	p.Gly12Arg	p.G12R	ENST00000356142	NM_018890.3	12	Gga/Aga																																																																														
TCF3	6929	MSKCC	GRCh37	19	1625640	1625640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1176	447	825	0	ENST00000344749.5:c.434G>A	p.Gly145Glu	p.G145E	ENST00000344749	NM_001136139.2	145	gGg/gAg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104359205	104359205	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	314	669	0	ENST00000369902.3:c.926G>C	p.Arg309Pro	p.R309P	ENST00000369902	NM_016169.3	309	cGg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	259	357	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430600	181430600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	35	337	0	ENST00000325404.1:c.452C>T	p.Ala151Val	p.A151V	ENST00000325404	NM_003106.3	151	gCg/gTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41276092	41276092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	189	469	0	ENST00000357654.3:c.22G>A	p.Val8Ile	p.V8I	ENST00000357654	NM_007294.3	8	Gtt/Att																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42840333	42840333	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	210	489	0	ENST00000398585.3:c.1415A>T	p.Asp472Val	p.D472V	ENST00000398585	NM_001135099.1	472	gAt/gTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76849203	76849203	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	387	801	0	ENST00000373344.5:c.6073G>T	p.Glu2025Ter	p.E2025*	ENST00000373344	NM_000489.3	2025	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	55	995	1	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	85	1064	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag																																																																														
EP300	2033	MSKCC	GRCh37	22	41572904	41572904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	82	498	1	ENST00000263253.7:c.5189C>T	p.Ser1730Phe	p.S1730F	ENST00000263253	NM_001429.3	1730	tCt/tTt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2202742	2202742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	168	717	0	ENST00000398665.3:c.751C>T	p.His251Tyr	p.H251Y	ENST00000398665	NM_032482.2	251	Cac/Tac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276266	15276266	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	88	531	0	ENST00000263388.2:c.5728C>G	p.Leu1910Val	p.L1910V	ENST00000263388	NM_000435.2	1910	Ctg/Gtg																																																																														
PIM1	5292	MSKCC	GRCh37	6	37141805	37141805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	58	467	0	ENST00000373509.5:c.880C>T	p.Leu294Phe	p.L294F	ENST00000373509	NM_002648.3	294	Ctc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	478	503	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380282	25380282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	445	498	0	ENST00000256078.4:c.176C>G	p.Ala59Gly	p.A59G	ENST00000256078	NM_033360.2	59	gCa/gGa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125514046	125514046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	403	730	0	ENST00000428830.2:c.984G>T	p.Trp328Cys	p.W328C	ENST00000428830	NM_001114121.2	328	tgG/tgT																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222389	2222389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	112	252	0	ENST00000398665.3:c.3221del	p.Asp1074AlafsTer26	p.D1074Afs*26	ENST00000398665	NM_032482.2	1074	gAc/gc																																																																														
ALK	238	MSKCC	GRCh37	2	29446364	29446364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	467	826	2	ENST00000389048.3:c.3203C>A	p.Ala1068Asp	p.A1068D	ENST00000389048	NM_004304.4	1068	gCc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400110	41400110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	353	450	0	ENST00000373198.4:c.649G>T	p.Gly217Trp	p.G217W	ENST00000373198	NM_133170.3	217	Ggg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52662909	52662910	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	396	408	1	ENST00000394830.3:c.1443_1443+1delinsTT		p.X481_splice	ENST00000394830	NM_018313.4	481																																																																															
PLK2	10769	MSKCC	GRCh37	5	57752826	57752826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	382	373	0	ENST00000274289.3:c.1102G>A	p.Ala368Thr	p.A368T	ENST00000274289	NM_006622.3	368	Gct/Act																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509174	106509174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	138	527	2	ENST00000359195.3:c.1168G>T	p.Gly390Trp	p.G390W	ENST00000359195	NM_002649.2	390	Ggg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653788	89654114	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAAGGTAAGAATGCTTTGATTTTCTATTTCAAATATTGATGTTTATATTCATGTTGTGTTTTCATTTAGAAAAGATTTCTAAGCCACAGAAAAAGATACTTTGTGATGTAAACTATTATTGTAGTGCTCTATAATCATTTTTTGGCTTACCGTACCTAATGGACTTCAGGGGGATACAGTTCATTTGATAAGAACTGACCTTATACATTACATAATCAGGTACTTATGTGATATCATTTCCTGGACTCCATA	ATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAAGGTAAGAATGCTTTGATTTTCTATTTCAAATATTGATGTTTATATTCATGTTGTGTTTTCATTTAGAAAAGATTTCTAAGCCACAGAAAAAGATACTTTGTGATGTAAACTATTATTGTAGTGCTCTATAATCATTTTTTGGCTTACCGTACCTAATGGACTTCAGGGGGATACAGTTCATTTGATAAGAACTGACCTTATACATTACATAATCAGGTACTTATGTGATATCATTTCCTGGACTCCATA	-			P-0014134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			23	50	512	0	ENST00000371953.3:c.87_164+249del		p.X29_splice	ENST00000371953	NM_000314.4	29																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49435254	49435254	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs199761931		P-0014244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	438	723	1	ENST00000301067.7:c.6299C>A	p.Pro2100Gln	p.P2100Q	ENST00000301067	NM_003482.3	2100	cCg/cAg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347935	89347935	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	428	751	0	ENST00000301030.4:c.5015C>G	p.Ser1672Ter	p.S1672*	ENST00000301030	NM_001256183.1	1672	tCa/tGa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750824	57750824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	260	366	0	ENST00000274289.3:c.1780G>T	p.Asp594Tyr	p.D594Y	ENST00000274289	NM_006622.3	594	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	341	459	0	ENST00000269305.4:c.751A>C	p.Ile251Leu	p.I251L	ENST00000269305	NM_001126112.2	251	Atc/Ctc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86648997	86648997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	144	331	0	ENST00000274376.6:c.1277A>G	p.Tyr426Cys	p.Y426C	ENST00000274376	NM_002890.2	426	tAt/tGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562346	176562346	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	300	517	0	ENST00000439151.2:c.242T>A	p.Met81Lys	p.M81K	ENST00000439151	NM_022455.4	81	aTg/aAg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509685	106509685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	269	467	0	ENST00000359195.3:c.1679C>T	p.Ala560Val	p.A560V	ENST00000359195	NM_002649.2	560	gCc/gTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692919	89692919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	275	595	0	ENST00000371953.3:c.403A>G	p.Ile135Val	p.I135V	ENST00000371953	NM_000314.4	135	Ata/Gta																																																																														
RB1	5925	MSKCC	GRCh37	13	48937055	48937055	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	153	325	1	ENST00000267163.4:c.823G>T	p.Glu275Ter	p.E275*	ENST00000267163	NM_000321.2	275	Gaa/Taa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245716	41245716	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	368	518	0	ENST00000357654.3:c.1832T>A	p.Leu611Gln	p.L611Q	ENST00000357654	NM_007294.3	611	cTg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921404	178921404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	373	473	0	ENST00000263967.3:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000263967	NM_006218.2	296	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	105	380	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	236	432	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
STK11	6794	MSKCC	GRCh37	19	1220650	1220650	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	115	683	0	ENST00000326873.7:c.668A>T	p.Glu223Val	p.E223V	ENST00000326873	NM_000455.4	223	gAg/gTg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3115048	3115048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	67	663	1	ENST00000078429.4:c.583G>A	p.Asp195Asn	p.D195N	ENST00000078429	NM_002067.2	195	Gac/Aac																																																																														
NUF2	83540	MSKCC	GRCh37	1	163307855	163307855	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	157	371	0	ENST00000271452.3:c.481G>A	p.Glu161Lys	p.E161K	ENST00000271452	NM_145697.2	161	Gag/Aag																																																																														
FH	2271	MSKCC	GRCh37	1	241682997	241682997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	141	406	0	ENST00000366560.3:c.26C>T	p.Ala9Val	p.A9V	ENST00000366560	NM_000143.3	9	gCg/gTg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998283	100998283	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	53	157	0	ENST00000325455.5:c.1519del	p.Ala507ArgfsTer39	p.A507Rfs*39	ENST00000325455	NM_001202474.3	507	Gcg/cg																																																																														
ATM	472	MSKCC	GRCh37	11	108139175	108139175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	149	508	0	ENST00000278616.4:c.2677C>T	p.Gln893Ter	p.Q893*	ENST00000278616	NM_000051.3	893	Caa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914126	32914126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	54	307	0	ENST00000380152.3:c.5634C>A	p.Asn1878Lys	p.N1878K	ENST00000380152		1878	aaC/aaA																																																																														
STK11	6794	MSKCC	GRCh37	19	1219323	1219336	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GTATATGGTGATGG	GTATATGGTGATGG	-			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	44	520	0	ENST00000326873.7:c.375_388del	p.Met125IlefsTer33	p.M125Ifs*33	ENST00000326873	NM_000455.4	125	atGTATATGGTGATGGag/atag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139410063	139410063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	81	779	1	ENST00000277541.6:c.1775G>T	p.Arg592Leu	p.R592L	ENST00000277541	NM_017617.3	592	cGc/cTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	224	528	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30320279	30320279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	28	486	0	ENST00000322652.5:c.1220C>T	p.Thr407Ile	p.T407I	ENST00000322652	NM_015355.2	407	aCt/aTt																																																																														
TET1	80312	MSKCC	GRCh37	10	70446399	70446399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	325	501	0	ENST00000373644.4:c.5339G>A	p.Arg1780Gln	p.R1780Q	ENST00000373644	NM_030625.2	1780	cGa/cAa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953287	17953340	+	inframe_deletion	In_Frame_Del	DEL	CGAGTGCCGGTCTGCCTGGCAGGCGGCCACGCGGCGCAGGGCTCTGCGCACCGT	CGAGTGCCGGTCTGCCTGGCAGGCGGCCACGCGGCGCAGGGCTCTGCGCACCGT	-			P-0014629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	357	625	0	ENST00000458235.1:c.646_699del	p.Thr216_Ser233del	p.T216_S233del	ENST00000458235	NM_000215.3	216	ACGGTGCGCAGAGCCCTGCGCCGCGTGGCCGCCTGCCAGGCAGACCGGCACTCG/-																																																																														
GNAS	2778	MSKCC	GRCh37	20	57466722	57466857	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	AGGCCGCCCGCGCCCGCCGCCGCCGCAGCCCGGCCGCGCCCCGCCGCCGCCGCCGCCGCCATGGGCTGCCTCGGGAACAGTAAGACCGAGGACCAGCGCAACGAGGAGAAGGCGCAGCGTGAGGCCAACAAAAAGA	AGGCCGCCCGCGCCCGCCGCCGCCGCAGCCCGGCCGCGCCCCGCCGCCGCCGCCGCCGCCATGGGCTGCCTCGGGAACAGTAAGACCGAGGACCAGCGCAACGAGGAGAAGGCGCAGCGTGAGGCCAACAAAAAGA	-			P-0014629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	36	0	0	ENST00000371085.3:c.-60_76delAGGCCGCCCGCGCCCGCCGCCGCCGCAGCCCGGCCGCGCCCCGCCGCCGCCGCCGCCGCCATGGGCTGCCTCGGGAACAGTAAGACCGAGGACCAGCGCAACGAGGAGAAGGCGCAGCGTGAGGCCAACAAAAAGA		p.*20fs*	ENST00000371085	NM_000516.4																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	217	682	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660481	67660482	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	182	451	0	ENST00000264010.4:c.1383dup	p.Tyr462LeufsTer3	p.Y462Lfs*3	ENST00000264010	NM_006565.3	461	tcc/tCcc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123171475	123171475	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0014634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	88	464	1	ENST00000218089.9:c.385+2T>A		p.X129_splice	ENST00000218089	NM_001042749.1	129																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	213	470	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	109	668	2	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271460	26271460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	37	373	0	ENST00000305910.3:c.153G>C	p.Glu51Asp	p.E51D	ENST00000305910	NM_003534.2	51	gaG/gaC																																																																														
RB1	5925	MSKCC	GRCh37	13	48916747	48916747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	73	430	0	ENST00000267163.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000267163	NM_000321.2	93	Caa/Taa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606131	81606131	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	123	668	0	ENST00000298171.2:c.801G>C	p.Leu267Phe	p.L267F	ENST00000298171	NM_000369.2	267	ttG/ttC																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202851	16202851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	92	592	1	ENST00000375759.3:c.559C>T	p.Arg187Trp	p.R187W	ENST00000375759	NM_015001.2	187	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133218793	133218793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	73	589	2	ENST00000320574.5:c.5143G>A	p.Glu1715Lys	p.E1715K	ENST00000320574	NM_006231.2	1715	Gag/Aag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250731	10250731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	130	806	0	ENST00000340748.4:c.3749C>T	p.Ser1250Phe	p.S1250F	ENST00000340748		1250	tCc/tTc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026303	48026303	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	90	420	0	ENST00000234420.5:c.1181C>G	p.Ser394Cys	p.S394C	ENST00000234420	NM_000179.2	394	tCt/tGt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793242	242793242	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	186	807	0	ENST00000334409.5:c.835C>G	p.Pro279Ala	p.P279A	ENST00000334409	NM_005018.2	279	Cct/Gct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628694	187628694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	128	724	0	ENST00000441802.2:c.2288G>T	p.Ser763Ile	p.S763I	ENST00000441802	NM_005245.3	763	aGt/aTt																																																																														
APC	324	MSKCC	GRCh37	5	112090627	112090627	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	51	426	0	ENST00000257430.4:c.40G>C	p.Glu14Gln	p.E14Q	ENST00000257430	NM_000038.5	14	Gag/Cag																																																																														
EZH2	2146	MSKCC	GRCh37	7	148526856	148526856	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	102	541	0	ENST00000320356.2:c.448A>G	p.Ile150Val	p.I150V	ENST00000320356	NM_004456.4	150	Ata/Gta																																																																														
TEK	7010	MSKCC	GRCh37	9	27202866	27202866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	77	656	0	ENST00000380036.4:c.1958C>T	p.Ser653Phe	p.S653F	ENST00000380036	NM_000459.3	653	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9928021	9928021	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	295	622	0	ENST00000330684.3:c.1718T>A	p.Val573Asp	p.V573D	ENST00000330684	NM_001134407.1	573	gTt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577017	7577017	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0014903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	445	812	0	ENST00000269305.4:c.919+2T>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
KLF4	9314	MSKCC	GRCh37	9	110249378	110249379	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0014903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	1351	1496	1	ENST00000374672.4:c.1194_1195del	p.Cys398Ter	p.C398*	ENST00000374672	NM_004235.4	398	tgTGat/tgat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	76	706	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	266	557	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
MGA	23269	MSKCC	GRCh37	15	42040972	42040972	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	177	570	0	ENST00000219905.7:c.5350G>T	p.Gly1784Ter	p.G1784*	ENST00000219905	NM_001164273.1	1784	Gga/Tga																																																																														
EZH2	2146	MSKCC	GRCh37	7	148506164	148506164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0015064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	75	441	0	ENST00000320356.2:c.2194A>G	p.Arg732Gly	p.R732G	ENST00000320356	NM_004456.4	732	Aga/Gga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			118	180	256	0	ENST00000371953.3:c.802-2A>T		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			172	616	755	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790908	89790910	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0016983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	110	571	2	ENST00000336032.3:c.301_303del	p.Lys101del	p.K101del	ENST00000336032	NM_006813.2	99	AAG/-																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375135	118375145	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGTGGGAAT	ACTGTGGGAAT	-			P-0016983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	133	473	0	ENST00000534358.1:c.8529_8539del	p.Cys2844ProfsTer21	p.C2844Pfs*21	ENST00000534358	NM_005933.3	2843	gACTGTGGGAAT/g																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965128	25965132	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAC	ATGAC	-			P-0016983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	465	622	0	ENST00000435504.4:c.4074_4078del	p.Met1358IlefsTer11	p.M1358Ifs*11	ENST00000435504		1358	atGTCATtt/attt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405911	157405911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	218	530	1	ENST00000346085.5:c.2153C>T	p.Ser718Leu	p.S718L	ENST00000346085	NM_020732.3	718	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	315	649	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			889	766	649	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			659	304	579	2	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630529	47630529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	204	484	0	ENST00000233146.2:c.199A>G	p.Met67Val	p.M67V	ENST00000233146	NM_000251.2	67	Atg/Gtg																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140151	50140151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019465-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			810	352	637	2	ENST00000246792.3:c.274G>T	p.Ala92Ser	p.A92S	ENST00000246792	NM_006270.3	92	Gcc/Tcc																																																																														
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0020549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	73	343	5	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	727	961	3	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114255	73114266	+	inframe_deletion	In_Frame_Del	DEL	AGAAGAGGATGA	AGAAGAGGATGA	-			P-0020549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	20	327	0	ENST00000356692.5:c.906_917delAGAGGATGAAGA	p.Asp304_Glu307del	p.D304_E307del	ENST00000356692		297	acAGAAGAGGATGAa/aca																																																																														
SPOP	8405	MSKCC	GRCh37	17	47679234	47679234	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	234	516	0	ENST00000347630.2:c.973A>G	p.Ile325Val	p.I325V	ENST00000347630	NM_001007230.1	325	Atc/Gtc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38955805	38955805	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0020549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	121	409	0	ENST00000357387.3:c.2501A>T	p.Glu834Val	p.E834V	ENST00000357387	NM_152756.3	834	gAa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	109	882	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	224	900	1	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	247	921	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857910	9857910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	171	754	9	ENST00000330684.3:c.3491C>T	p.Thr1164Met	p.T1164M	ENST00000330684	NM_001134407.1	1164	aCg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0020577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	81	964	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0020577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	10	70	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-																																																																														
MYCL	4610	MSKCC	GRCh37	1	40367512	40367512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	11	56	0	ENST00000397332.2:c.49G>T	p.Gly17Cys	p.G17C	ENST00000397332	NM_001033082.2	17	Ggt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108183136	108183137	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0020577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	67	540	0	ENST00000278616.4:c.5919-1_5919del		p.X1973_splice	ENST00000278616	NM_000051.3	1973																																																																															
ATM	472	MSKCC	GRCh37	11	108202630	108202630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	79	580	1	ENST00000278616.4:c.7654C>T	p.His2552Tyr	p.H2552Y	ENST00000278616	NM_000051.3	2552	Cac/Tac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929175	44929176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	215	912	0	ENST00000377967.4:c.2278dup	p.Cys760LeufsTer4	p.C760Lfs*4	ENST00000377967	NM_021140.2	759	gtt/gTtt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410733	63410733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	189	976	3	ENST00000330258.3:c.2434G>A	p.Ala812Thr	p.A812T	ENST00000330258	NM_152424.3	812	Gct/Act																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	223	479	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426955	49426955	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	53	691	0	ENST00000301067.7:c.11533C>T	p.Gln3845Ter	p.Q3845*	ENST00000301067	NM_003482.3	3845	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432741	49432741	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	57	868	0	ENST00000301067.7:c.8398C>T	p.Gln2800Ter	p.Q2800*	ENST00000301067	NM_003482.3	2800	Cag/Tag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48023196	48023196	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	47	686	0	ENST00000234420.5:c.621G>C	p.Glu207Asp	p.E207D	ENST00000234420	NM_000179.2	207	gaG/gaC																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016336	150016336	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	60	597	0	ENST00000253339.5:c.370C>T	p.Gln124Ter	p.Q124*	ENST00000253339		124	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	503	663	0				ENST00000310581	NM_198253.2																																																																																
AKT3	10000	MSKCC	GRCh37	1	243708901	243708901	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0020592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	115	689	1	ENST00000263826.5:c.1164-2A>G		p.X388_splice	ENST00000263826	NM_005465.4	388																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440142	49440145	+	frameshift_variant	Frame_Shift_Del	DEL	TAAC	TAAC	-			P-0020592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	95	976	0	ENST00000301067.7:c.4481_4484del	p.Ser1494ThrfsTer11	p.S1494Tfs*11	ENST00000301067	NM_003482.3	1494	aGTTAc/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579503	7579503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	367	1163	0	ENST00000269305.4:c.184G>T	p.Glu62Ter	p.E62*	ENST00000269305	NM_001126112.2	62	Gaa/Taa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651959	36651959	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	788	826	0	ENST00000244741.5:c.81del	p.Ser27ArgfsTer4	p.S27Rfs*4	ENST00000244741	NM_000389.4	27	agC/ag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522588	157522588	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	99	1051	0	ENST00000346085.5:c.4860G>C	p.Leu1620Phe	p.L1620F	ENST00000346085	NM_020732.3	1620	ttG/ttC																																																																														
CARD11	84433	MSKCC	GRCh37	7	2974105	2974105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	202	640	1	ENST00000396946.4:c.1500G>A	p.Met500Ile	p.M500I	ENST00000396946	NM_032415.4	500	atG/atA																																																																														
ATRX	546	MSKCC	GRCh37	X	76938916	76938918	+	missense_variant	Missense_Mutation	ONP	TCT	TCT	ATC			P-0020592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	110	578	0	ENST00000373344.5:c.1830_1832delinsGAT	p.Asp611Ile	p.D611I	ENST00000373344	NM_000489.3	610	caAGAt/caGATt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	271	854	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242454	55242454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	177	745	1	ENST00000275493.2:c.2224G>A	p.Val742Ile	p.V742I	ENST00000275493	NM_005228.3	742	Gtc/Atc																																																																														
ATM	472	MSKCC	GRCh37	11	108206648	108206648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	373	620	2	ENST00000278616.4:c.8228C>T	p.Thr2743Met	p.T2743M	ENST00000278616	NM_000051.3	2743	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106830	27106831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	433	700	0	ENST00000324856.7:c.6442dup	p.Tyr2148LeufsTer2	p.Y2148Lfs*2	ENST00000324856	NM_006015.4	2147	-/T																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627506	37627506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	165	720	1	ENST00000447079.4:c.1421A>G	p.Asn474Ser	p.N474S	ENST00000447079	NM_015083.1	474	aAt/aGt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144645	55144645	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	167	634	0	ENST00000257290.5:c.2119A>G	p.Ile707Val	p.I707V	ENST00000257290	NM_006206.4	707	Atc/Gtc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649640	48649640	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	119	972	0	ENST00000376670.3:c.124G>C	p.Asp42His	p.D42H	ENST00000376670	NM_002049.3	42	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	485	1173	0	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442567	52442567	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	40	805	5	ENST00000460680.1:c.178C>T	p.Arg60Ter	p.R60*	ENST00000460680	NM_004656.3	60	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0020928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	78	682	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
CDH1	999	MSKCC	GRCh37	16	68835632	68835633	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0020928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	332	1100	0	ENST00000261769.5:c.223_224del	p.Phe75GlnfsTer18	p.F75Qfs*18	ENST00000261769	NM_004360.3	75	TTc/c																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189423	56189431	+	inframe_deletion	In_Frame_Del	DEL	TCTTCGTTG	TCTTCGTTG	-			P-0020928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	249	1049	0	ENST00000399503.3:c.4456_4464del	p.Arg1487_Leu1489del	p.R1487_L1489del	ENST00000399503	NM_005921.1	1485	gcTCTTCGTTGt/gct																																																																														
MYC	4609	MSKCC	GRCh37	8	128752831	128752831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	61	534	0	ENST00000377970.2:c.992G>A	p.Arg331Gln	p.R331Q	ENST00000377970	NM_002467.4	331	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	393	1028	1	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	301	723	2	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	284	1076	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1625652	1625652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	304	1204	1	ENST00000344749.5:c.422C>T	p.Ser141Leu	p.S141L	ENST00000344749	NM_001136139.2	141	tCg/tTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039404	47039404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	217	498	1	ENST00000329236.7:c.796C>T	p.Arg266Cys	p.R266C	ENST00000329236	NM_001204466.1	266	Cgc/Tgc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2964000	2964000	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	136	869	0	ENST00000396946.4:c.1808-1G>A		p.X603_splice	ENST00000396946	NM_032415.4	603																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156846312	156846312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	235	1131	1	ENST00000524377.1:c.1753C>A	p.Leu585Met	p.L585M	ENST00000524377	NM_002529.3	585	Ctg/Atg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934627	9934627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	13	587	0	ENST00000330684.3:c.1528G>T	p.Gly510Cys	p.G510C	ENST00000330684	NM_001134407.1	510	Ggc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101134	41101134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	138	905	0	ENST00000373198.4:c.1222G>C	p.Glu408Gln	p.E408Q	ENST00000373198	NM_133170.3	408	Gag/Cag																																																																														
EP300	2033	MSKCC	GRCh37	22	41556714	41556714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	196	701	0	ENST00000263253.7:c.3659C>T	p.Ser1220Phe	p.S1220F	ENST00000263253	NM_001429.3	1220	tCc/tTc																																																																														
MET	4233	MSKCC	GRCh37	7	116411871	116411920	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAACAAGCTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAG	TTAACAAGCTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAG	-			P-0020950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	382	1340	0	ENST00000397752.3:c.2888-30_2907del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
TP53	7157	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	416	1226	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073271	8073271	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0020984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	59	487	0	ENST00000377482.5:c.1388A>G	p.Ter463TrpextTer30	p.*463Wext*30	ENST00000377482	NM_018948.3	463	tAg/tGg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644700	134644700	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	235	836	0	ENST00000398015.3:c.102del	p.Trp34Ter	p.W34*	ENST00000398015	NM_004441.4	34	tGg/tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	264	844	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942183	81942183	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	208	756	0	ENST00000359376.3:c.1720A>G	p.Thr574Ala	p.T574A	ENST00000359376	NM_002661.3	574	Acc/Gcc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091722	29091722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	42	137	2	ENST00000328354.6:c.1235G>A	p.Ser412Asn	p.S412N	ENST00000328354	NM_007194.3	412	aGt/aAt																																																																														
APC	324	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	213	398	0	ENST00000257430.4:c.3980C>G	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579530	7579537	+	frameshift_variant	Frame_Shift_Del	DEL	ATTGTTCA	ATTGTTCA	-			P-0021175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	454	1056	1	ENST00000269305.4:c.150_157del	p.Ile50MetfsTer4	p.I50Mfs*4	ENST00000269305	NM_001126112.2	50	atTGAACAATgg/atgg																																																																														
CASP8	841	MSKCC	GRCh37	2	202137360	202137360	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0021175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	909	363	0	ENST00000358485.4:c.589-1G>C		p.X197_splice	ENST00000358485	NM_001080125.1	197																																																																															
CASP8	841	MSKCC	GRCh37	2	202137393	202137393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	1262	473	0	ENST00000358485.4:c.621G>T	p.Lys207Asn	p.K207N	ENST00000358485	NM_001080125.1	207	aaG/aaT																																																																														
CASP8	841	MSKCC	GRCh37	2	202137653	202137653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	1402	612	0	ENST00000358485.4:c.760G>A	p.Glu254Lys	p.E254K	ENST00000358485	NM_001080125.1	254	Gaa/Aaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163580	47163580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	181	515	0	ENST00000409792.3:c.2546G>T	p.Cys849Phe	p.C849F	ENST00000409792	NM_014159.6	849	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	554	1036	2	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850777	63850777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	140	627	1	ENST00000279873.7:c.1555G>A	p.Glu519Lys	p.E519K	ENST00000279873	NM_032199.2	519	Gaa/Aaa																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047147	77047147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	207	892	0	ENST00000356341.3:c.1397A>G	p.Asn466Ser	p.N466S	ENST00000356341	NM_002576.4	466	aAt/aGt																																																																														
IDH2	3418	MSKCC	GRCh37	15	90628536	90628536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	505	972	4	ENST00000330062.3:c.1051G>A	p.Val351Ile	p.V351I	ENST00000330062	NM_002168.2	351	Gtc/Atc																																																																														
AXL	558	MSKCC	GRCh37	19	41745076	41745076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	170	992	4	ENST00000301178.4:c.1142T>C	p.Met381Thr	p.M381T	ENST00000301178	NM_021913.4	381	aTg/aCg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408882	41408882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	173	696	2	ENST00000373198.4:c.544G>T	p.Val182Phe	p.V182F	ENST00000373198	NM_133170.3	182	Gtc/Ttc																																																																														
ATR	545	MSKCC	GRCh37	3	142272847	142272847	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	122	692	0	ENST00000350721.4:c.2352del	p.Asp784GlufsTer19	p.D784Efs*19	ENST00000350721	NM_001184.3	784	gaT/ga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589625	67589627	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0021179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	276	554	0	ENST00000274335.5:c.1390_1392del	p.Asp464del	p.D464del	ENST00000274335		463	tATGat/tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	596	615	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	156	566	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127755	64127755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	277	548	0	ENST00000334205.4:c.248G>C	p.Arg83Pro	p.R83P	ENST00000334205	NM_003942.2	83	cGc/cCc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3652237	3652237	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141597706		P-0021206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	292	612	2	ENST00000294008.3:c.832C>T	p.Arg278Trp	p.R278W	ENST00000294008	NM_032444.2	278	Cgg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41573138	41573138	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	389	722	0	ENST00000263253.7:c.5423A>C	p.Asn1808Thr	p.N1808T	ENST00000263253	NM_001429.3	1808	aAc/aCc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259384	89259384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	327	588	0	ENST00000336596.2:c.528G>T	p.Lys176Asn	p.K176N	ENST00000336596	NM_005233.5	176	aaG/aaT																																																																														
BCL6	604	MSKCC	GRCh37	3	187447371	187447371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	537	665	0	ENST00000232014.4:c.822C>G	p.His274Gln	p.H274Q	ENST00000232014	NM_001130845.1	274	caC/caG																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542873	187542873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	133	522	0	ENST00000441802.2:c.4867A>G	p.Lys1623Glu	p.K1623E	ENST00000441802	NM_005245.3	1623	Aaa/Gaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028134	69028134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	299	663	0	ENST00000288368.4:c.3293G>T	p.Gly1098Val	p.G1098V	ENST00000288368	NM_024870.2	1098	gGt/gTt																																																																														
MYC	4609	MSKCC	GRCh37	8	128752917	128752917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	160	379	0	ENST00000377970.2:c.1078C>T	p.Pro360Ser	p.P360S	ENST00000377970	NM_002467.4	360	Ccc/Tcc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482205	87482205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	507	666	0	ENST00000277120.3:c.1492C>T	p.His498Tyr	p.H498Y	ENST00000277120		498	Cat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	221	841	1	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81891937	81891937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	41	810	1	ENST00000359376.3:c.407C>T	p.Ala136Val	p.A136V	ENST00000359376	NM_002661.3	136	gCg/gTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400023	139400023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	243	879	0	ENST00000277541.6:c.4325C>T	p.Pro1442Leu	p.P1442L	ENST00000277541	NM_017617.3	1442	cCg/cTg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511119	148511119	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	174	645	0	ENST00000320356.2:c.1783del	p.Ala595ProfsTer80	p.A595Pfs*80	ENST00000320356	NM_004456.4	595	Gcc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	431	867	1	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	440	1002	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624242	89624242	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	145	322	0	ENST00000371953.3:c.16A>T	p.Lys6Ter	p.K6*	ENST00000371953	NM_000314.4	6	Aaa/Taa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763509	59763509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	296	707	2	ENST00000259008.2:c.2593C>T	p.Arg865Trp	p.R865W	ENST00000259008	NM_032043.2	865	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	29917753	29917753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	457	1078	0	ENST00000389048.3:c.915del	p.Asp305GlufsTer30	p.D305Efs*30	ENST00000389048	NM_004304.4	305	gaT/ga																																																																														
BRAF	673	MSKCC	GRCh37	7	140624451	140624451	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	121	246	0	ENST00000288602.6:c.53T>A	p.Leu18Gln	p.L18Q	ENST00000288602	NM_004333.4	18	cTg/cAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11181367	11181367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	178	944	2	ENST00000361445.4:c.6869C>T	p.Ala2290Val	p.A2290V	ENST00000361445	NM_004958.3	2290	gCc/gTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190585	11190585	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	143	604	1	ENST00000361445.4:c.5613+1G>T		p.X1871_splice	ENST00000361445	NM_004958.3	1871																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	103	629	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46733219	46733219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	174	850	1	ENST00000371975.4:c.980C>T	p.Pro327Leu	p.P327L	ENST00000371975	NM_003579.3	327	cCc/cTc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	73	506	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	61	623	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	60	612	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339110	65339111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	92	649	3	ENST00000342505.4:c.425dupA	p.Ile143AspfsTer9	p.I143Dfs*9	ENST00000342505	NM_002227.2	142	aag/aaAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120506250	120506250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	101	528	1	ENST00000256646.2:c.1862G>A	p.Arg621His	p.R621H	ENST00000256646	NM_024408.3	621	cGc/cAc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176175759	176175760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	65	846	0	ENST00000367669.3:c.355dup	p.Leu119ProfsTer23	p.L119Pfs*23	ENST00000367669	NM_022457.5	119	ctc/cCtc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100462	8100462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	55	938	0	ENST00000346208.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000346208		146	Gcc/Acc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693002	89693003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	77	434	1	ENST00000371953.3:c.491dupA	p.Val166SerfsTer14	p.V166Sfs*14	ENST00000371953	NM_000314.4	162	-/A																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	139	808	2	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
SUFU	51684	MSKCC	GRCh37	10	104359213	104359213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	50	568	0	ENST00000369902.3:c.934C>A	p.Leu312Met	p.L312M	ENST00000369902	NM_016169.3	312	Ctg/Atg																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	241	571	0	ENST00000256196.4:c.68G>T	p.Gly23Val	p.G23V	ENST00000256196		23	gGc/gTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373618	118373618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	38	688	0	ENST00000534358.1:c.7011G>T	p.Gln2337His	p.Q2337H	ENST00000534358	NM_005933.3	2337	caG/caT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427743	49427743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	188	888	2	ENST00000301067.7:c.10745G>A	p.Arg3582Gln	p.R3582Q	ENST00000301067	NM_003482.3	3582	cGg/cAg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	258	1051	2	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117342	115117342	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	77	655	0	ENST00000257566.3:c.832T>C	p.Phe278Leu	p.F278L	ENST00000257566	NM_016569.3	278	Ttc/Ctc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953633	32953633	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	82	558	0	ENST00000380152.3:c.8940del	p.Glu2981LysfsTer7	p.E2981Kfs*7	ENST00000380152		2978	tcA/tc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73348134	73348134	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	124	722	0	ENST00000377767.4:c.1051del	p.Arg351GlyfsTer35	p.R351Gfs*35	ENST00000377767	NM_014953.3	351	Agg/gg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762249	43762249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	138	852	1	ENST00000382044.4:c.1196C>T	p.Thr399Met	p.T399M	ENST00000382044	NM_001141980.1	399	aCg/aTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900741	3900741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	56	635	0	ENST00000262367.5:c.355G>T	p.Gly119Cys	p.G119C	ENST00000262367	NM_004380.2	119	Ggc/Tgc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	113	542	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821918	72821918	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	60	436	1	ENST00000268489.5:c.10257del	p.Lys3420AsnfsTer65	p.K3420Nfs*65	ENST00000268489	NM_006885.3	3419	ccC/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993551	72993551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	59	750	0	ENST00000268489.5:c.494C>T	p.Pro165Leu	p.P165L	ENST00000268489	NM_006885.3	165	cCt/cTt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	208	871	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604809	48604809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	42	468	0	ENST00000342988.3:c.1631C>A	p.Pro544Gln	p.P544Q	ENST00000342988	NM_005359.5	544	cCg/cAg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1611771	1611771	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	177	995	0	ENST00000344749.5:c.1891del	p.Gln631ArgfsTer11	p.Q631Rfs*11	ENST00000344749	NM_001136139.2	631	Cag/ag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216397	2216400	+	missense_variant	Missense_Mutation	ONP	CGCG	CGCG	TGCA			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	143	852	0	ENST00000398665.3:c.2041_2044delinsTGCA	p.Arg681_Glu682delinsCysLys	p.R681_E682delinsCK	ENST00000398665	NM_032482.2	681	CGCGag/TGCAag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145605	11145605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	144	655	0	ENST00000344626.4:c.3967C>T	p.Arg1323Cys	p.R1323C	ENST00000344626	NM_003072.3	1323	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271730	15271730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	100	1179	2	ENST00000263388.2:c.6709C>T	p.Arg2237Trp	p.R2237W	ENST00000263388	NM_000435.2	2237	Cgg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300155	15300155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	217	976	1	ENST00000263388.2:c.1121G>A	p.Arg374Gln	p.R374Q	ENST00000263388	NM_000435.2	374	cGg/cAg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279937	18279937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	225	907	0	ENST00000222254.8:c.2020G>A	p.Ala674Thr	p.A674T	ENST00000222254	NM_005027.3	674	Gcc/Acc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250275	39250275	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	242	1210	0	ENST00000402219.2:c.1294T>C	p.Trp432Arg	p.W432R	ENST00000402219	NM_005633.3	432	Tgg/Cgg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030691	48030692	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	128	527	1	ENST00000234420.5:c.3312dupT	p.Gly1105TrpfsTer3	p.G1105Wfs*3	ENST00000234420	NM_000179.2	1102	act/acTt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033352	48033352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	134	691	0	ENST00000234420.5:c.3656C>T	p.Thr1219Ile	p.T1219I	ENST00000234420	NM_000179.2	1219	aCt/aTt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659859	227659859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	153	634	1	ENST00000305123.5:c.3596C>T	p.Pro1199Leu	p.P1199L	ENST00000305123	NM_005544.2	1199	cCg/cTg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375249	31375249	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	77	929	0	ENST00000328111.2:c.646del	p.Glu216SerfsTer10	p.E216Sfs*10	ENST00000328111	NM_006892.3	216	Gag/ag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747065	40747065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	149	744	0	ENST00000373198.4:c.3017C>T	p.Thr1006Ile	p.T1006I	ENST00000373198	NM_133170.3	1006	aCa/aTa																																																																														
CRKL	1399	MSKCC	GRCh37	22	21272266	21272266	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	59	632	0	ENST00000354336.3:c.44A>G	p.Tyr15Cys	p.Y15C	ENST00000354336	NM_005207.3	15	tAt/tGt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620542	52620542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	204	810	1	ENST00000394830.3:c.3211C>T	p.Arg1071Cys	p.R1071C	ENST00000394830	NM_018313.4	1071	Cgc/Tgc																																																																														
ATR	545	MSKCC	GRCh37	3	142176551	142176551	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	166	728	0	ENST00000350721.4:c.7550A>G	p.His2517Arg	p.H2517R	ENST00000350721	NM_001184.3	2517	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	190	958	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31431766	31431766	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	150	679	1	ENST00000344624.3:c.3062T>G	p.Phe1021Cys	p.F1021C	ENST00000344624		1021	tTt/tGt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	107	482	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322269	31322270	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	52	503	0	ENST00000412585.2:c.1079_1080del	p.Leu360HisfsTer39	p.L360Hfs*39	ENST00000412585	NM_005514.6	360	cTC/c																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004525	150004525	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	173	954	0	ENST00000253339.5:c.1700A>G	p.Asn567Ser	p.N567S	ENST00000253339		567	aAc/aGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150551	157150551	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	114	547	0	ENST00000346085.5:c.1733A>C	p.Gln578Pro	p.Q578P	ENST00000346085	NM_020732.3	578	cAg/cCg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528830	157528831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	147	689	0	ENST00000346085.5:c.6559dup	p.Leu2187ProfsTer5	p.L2187Pfs*5	ENST00000346085	NM_020732.3	2185	-/C																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	102	728	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078388	5078388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	117	775	0	ENST00000381652.3:c.2075C>A	p.Pro692His	p.P692H	ENST00000381652	NM_004972.3	692	cCt/cAt																																																																														
TEK	7010	MSKCC	GRCh37	9	27180334	27180334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	83	592	0	ENST00000380036.4:c.998C>T	p.Pro333Leu	p.P333L	ENST00000380036	NM_000459.3	333	cCa/cTa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135801080	135801080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	124	599	0	ENST00000298552.3:c.257G>A	p.Arg86His	p.R86H	ENST00000298552	NM_001162426.1	86	cGt/cAt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137309024	137309024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	170	941	3	ENST00000481739.1:c.631C>T	p.Arg211Cys	p.R211C	ENST00000481739	NM_002957.4	211	Cgt/Tgt																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564123	139564123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	91	898	0	ENST00000308874.7:c.263G>A	p.Cys88Tyr	p.C88Y	ENST00000308874		88	tGc/tAc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058569	72058569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	53	735	2	ENST00000357731.5:c.871C>T	p.His291Tyr	p.H291Y	ENST00000357731	NM_173808.2	291	Cac/Tac																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	246	621	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692919	89692919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	152	660	0	ENST00000371953.3:c.403A>G	p.Ile135Val	p.I135V	ENST00000371953	NM_000314.4	135	Ata/Gta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	152	833	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	223	541	2	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	467	857	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59821817	59821817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	145	796	0	ENST00000259008.2:c.2233G>A	p.Ala745Thr	p.A745T	ENST00000259008	NM_032043.2	745	Gca/Aca																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155411	185155411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140970208		P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	33	499	2	ENST00000265026.3:c.652G>A	p.Ala218Thr	p.A218T	ENST00000265026	NM_004721.4	218	Gca/Aca																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1957873	1957873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	327	734	1	ENST00000382891.5:c.2839C>T	p.Arg947Cys	p.R947C	ENST00000382891	NM_133335.3	947	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112174310	112174310	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	88	496	0	ENST00000257430.4:c.3022del	p.Ile1008TyrfsTer14	p.I1008Yfs*14	ENST00000257430	NM_000038.5	1007	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112175802	112175802	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	114	439	0	ENST00000257430.4:c.4512del	p.Ser1505AlafsTer2	p.S1505Afs*2	ENST00000257430	NM_000038.5	1504	tCc/tc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180039570	180039570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	467	985	2	ENST00000261937.6:c.3473C>T	p.Ala1158Val	p.A1158V	ENST00000261937	NM_182925.4	1158	gCg/gTg																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158411	26158411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	366	973	2	ENST00000289316.2:c.14C>T	p.Thr5Ile	p.T5I	ENST00000289316	NM_138720.2	5	aCc/aTc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900200	101900200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	118	590	0	ENST00000374994.4:c.634G>A	p.Gly212Ser	p.G212S	ENST00000374994	NM_004612.2	212	Ggc/Agc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412391	63412392	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	CA			P-0021518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	389	994	1	ENST00000330258.3:c.775_776delinsTG	p.Glu259Ter	p.E259*	ENST00000330258	NM_152424.3	259	GAa/TGa																																																																														
STK11	6794	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	203	872	5	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849872	156849872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	330	868	1	ENST00000524377.1:c.2128G>T	p.Val710Leu	p.V710L	ENST00000524377	NM_002529.3	710	Gtg/Ttg																																																																														
POLE	5426	MSKCC	GRCh37	12	133214725	133214726	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	162	654	0	ENST00000320574.5:c.5553-1_5553delinsTT		p.X1851_splice	ENST00000320574	NM_006231.2	1851																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103514650	103514650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	42	520	0	ENST00000355739.4:c.1151C>T	p.Ser384Leu	p.S384L	ENST00000355739	NM_000123.3	384	tCa/tTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55229197	55229197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	95	410	1	ENST00000275493.2:c.1504A>G	p.Thr502Ala	p.T502A	ENST00000275493	NM_005228.3	502	Aca/Gca																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245151	53245151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	107	427	2	ENST00000375401.3:c.789G>T	p.Glu263Asp	p.E263D	ENST00000375401	NM_004187.3	263	gaG/gaT																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88679204	88679204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	44	400	0	ENST00000372037.3:c.1144G>T	p.Gly382Cys	p.G382C	ENST00000372037	NM_004329.2	382	Ggc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262553	16262553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	79	594	0	ENST00000375759.3:c.9818C>T	p.Thr3273Ile	p.T3273I	ENST00000375759	NM_015001.2	3273	aCc/aTc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591964	48591964	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	42	504	0	ENST00000342988.3:c.1127T>A	p.Ile376Asn	p.I376N	ENST00000342988	NM_005359.5	376	aTt/aAt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47710066	47710066	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	51	421	0	ENST00000233146.2:c.2783C>G	p.Ser928Ter	p.S928*	ENST00000233146	NM_000251.2	928	tCa/tGa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69050686	69050686	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	124	862	0	ENST00000288368.4:c.4021del	p.Ala1341HisfsTer37	p.A1341Hfs*37	ENST00000288368	NM_024870.2	1341	Gca/ca																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597475	10597490	+	frameshift_variant	Frame_Shift_Del	DEL	CGTGTGACCATCATAG	CGTGTGACCATCATAG	-			P-0021521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	130	921	0	ENST00000171111.5:c.1713_1728del	p.Tyr572SerfsTer18	p.Y572Sfs*18	ENST00000171111	NM_203500.1	571	ggCTATGATGGTCACACG/gg																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2489164	2489164	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	135	567	2	ENST00000355716.4:c.70-1G>T		p.X24_splice	ENST00000355716	NM_003820.2	24																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9784861	9784861	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	283	590	0	ENST00000377346.4:c.2865-1G>T		p.X955_splice	ENST00000377346	NM_005026.3	955																																																																															
MTOR	2475	MSKCC	GRCh37	1	11174501	11174501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	289	498	0	ENST00000361445.4:c.7174C>A	p.Leu2392Met	p.L2392M	ENST00000361445	NM_004958.3	2392	Ctg/Atg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255320	16255320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	261	467	0	ENST00000375759.3:c.2585C>T	p.Ala862Val	p.A862V	ENST00000375759	NM_015001.2	862	gCt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100871	27100871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	290	467	0	ENST00000324856.7:c.4153G>A	p.Glu1385Lys	p.E1385K	ENST00000324856	NM_006015.4	1385	Gaa/Aaa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36938156	36938156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	360	750	0	ENST00000361632.4:c.805C>T	p.Arg269Cys	p.R269C	ENST00000361632		269	Cgc/Tgc																																																																														
MPL	4352	MSKCC	GRCh37	1	43805058	43805058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	61	627	1	ENST00000372470.3:c.508C>T	p.Arg170Cys	p.R170C	ENST00000372470	NM_005373.2	170	Cgc/Tgc																																																																														
MPL	4352	MSKCC	GRCh37	1	43814955	43814955	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	53	382	0	ENST00000372470.3:c.1490C>A	p.Ala497Asp	p.A497D	ENST00000372470	NM_005373.2	497	gCt/gAt																																																																														
MPL	4352	MSKCC	GRCh37	1	43818232	43818232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	275	604	1	ENST00000372470.3:c.1697G>A	p.Ser566Asn	p.S566N	ENST00000372470	NM_005373.2	566	aGc/aAc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46543206	46543206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	195	460	0	ENST00000262741.5:c.295G>A	p.Asp99Asn	p.D99N	ENST00000262741	NM_003629.3	99	Gat/Aat																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743605	46743605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	350	656	0	ENST00000371975.4:c.1986G>T	p.Lys662Asn	p.K662N	ENST00000371975	NM_003579.3	662	aaG/aaT																																																																														
JAK1	3716	MSKCC	GRCh37	1	65304233	65304233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	143	373	0	ENST00000342505.4:c.2882C>T	p.Ser961Leu	p.S961L	ENST00000342505	NM_002227.2	961	tCg/tTg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834214	156834214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	93	758	0	ENST00000524377.1:c.281G>T	p.Arg94Ile	p.R94I	ENST00000524377	NM_002529.3	94	aGa/aTa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156837999	156837999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	403	816	1	ENST00000524377.1:c.532C>A	p.His178Asn	p.H178N	ENST00000524377	NM_002529.3	178	Cat/Aat																																																																														
DDR2	4921	MSKCC	GRCh37	1	162722915	162722915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	64	520	0	ENST00000367921.3:c.113G>T	p.Gly38Val	p.G38V	ENST00000367921	NM_006182.2	38	gGa/gTa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740231	162740231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	214	413	2	ENST00000367921.3:c.1433G>A	p.Arg478His	p.R478H	ENST00000367921	NM_006182.2	478	cGc/cAc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740279	162740279	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	161	315	0	ENST00000367921.3:c.1481T>C	p.Phe494Ser	p.F494S	ENST00000367921	NM_006182.2	494	tTt/tCt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163306559	163306559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	118	430	0	ENST00000271452.3:c.356G>A	p.Arg119Gln	p.R119Q	ENST00000271452	NM_145697.2	119	cGg/cAg																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176050315	176050315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	91	377	0	ENST00000367669.3:c.1250T>C	p.Leu417Pro	p.L417P	ENST00000367669	NM_022457.5	417	cTc/cCc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	69	233	0	ENST00000367435.3:c.440G>A	p.Arg147His	p.R147H	ENST00000367435	NM_024529.4	147	cGc/cAc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206653395	206653395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	367	598	1	ENST00000367120.3:c.1279C>T	p.Arg427Trp	p.R427W	ENST00000367120	NM_014002.3	427	Cgg/Tgg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206666648	206666648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	336	645	0	ENST00000367120.3:c.1982C>T	p.Ala661Val	p.A661V	ENST00000367120	NM_014002.3	661	gCt/gTt																																																																														
PARP1	142	MSKCC	GRCh37	1	226567276	226567276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	180	408	0	ENST00000366794.5:c.1610C>T	p.Ser537Phe	p.S537F	ENST00000366794	NM_001618.3	537	tCt/tTt																																																																														
PARP1	142	MSKCC	GRCh37	1	226574088	226574088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	225	475	1	ENST00000366794.5:c.773C>A	p.Thr258Asn	p.T258N	ENST00000366794	NM_001618.3	258	aCt/aAt																																																																														
PARP1	142	MSKCC	GRCh37	1	226578195	226578195	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202057244		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	284	470	2	ENST00000366794.5:c.533C>T	p.Ala178Val	p.A178V	ENST00000366794	NM_001618.3	178	gCg/gTg																																																																														
FH	2271	MSKCC	GRCh37	1	241669371	241669371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	163	363	0	ENST00000366560.3:c.836T>C	p.Val279Ala	p.V279A	ENST00000366560	NM_000143.3	279	gTt/gCt																																																																														
FH	2271	MSKCC	GRCh37	1	241675266	241675266	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	26	339	0	ENST00000366560.3:c.555+1G>A		p.X185_splice	ENST00000366560	NM_000143.3	185																																																																															
AKT3	10000	MSKCC	GRCh37	1	243736334	243736334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	188	362	0	ENST00000263826.5:c.713C>T	p.Ser238Leu	p.S238L	ENST00000263826	NM_005465.4	238	tCg/tTg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243800950	243800950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	115	399	0	ENST00000263826.5:c.524C>A	p.Ala175Asp	p.A175D	ENST00000263826	NM_005465.4	175	gCt/gAt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097667	8097667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	170	308	0	ENST00000346208.3:c.49G>A	p.Ala17Thr	p.A17T	ENST00000346208		17	Gcc/Acc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851756	63851756	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	281	623	0	ENST00000279873.7:c.2534A>G	p.Glu845Gly	p.E845G	ENST00000279873	NM_032199.2	845	gAg/gGg																																																																														
TET1	80312	MSKCC	GRCh37	10	70406694	70406694	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	220	483	0	ENST00000373644.4:c.4208T>G	p.Phe1403Cys	p.F1403C	ENST00000373644	NM_030625.2	1403	tTt/tGt																																																																														
TET1	80312	MSKCC	GRCh37	10	70450724	70450724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	58	497	0	ENST00000373644.4:c.5564C>T	p.Ala1855Val	p.A1855V	ENST00000373644	NM_030625.2	1855	gCt/gTt																																																																														
TET1	80312	MSKCC	GRCh37	10	70450795	70450795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	49	468	0	ENST00000373644.4:c.5635C>T	p.Pro1879Ser	p.P1879S	ENST00000373644	NM_030625.2	1879	Ccc/Tcc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672038	88672038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	122	346	1	ENST00000372037.3:c.572G>A	p.Arg191His	p.R191H	ENST00000372037	NM_004329.2	191	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692770	89692770	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	128	389	0	ENST00000371953.3:c.254T>G	p.Val85Gly	p.V85G	ENST00000371953	NM_000314.4	85	gTt/gGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	184	510	0	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720744	89720744	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	16	216	1	ENST00000371953.3:c.895G>T	p.Glu299Ter	p.E299*	ENST00000371953	NM_000314.4	299	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720870	89720870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	151	361	0	ENST00000371953.3:c.1021T>G	p.Phe341Val	p.F341V	ENST00000371953	NM_000314.4	341	Ttt/Gtt																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161441	2161441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	100	505	0	ENST00000434045.2:c.86T>C	p.Val29Ala	p.V29A	ENST00000434045	NM_001127598.1	29	gTa/gCa																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248592	8248592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	325	656	0	ENST00000335790.3:c.295G>A	p.Glu99Lys	p.E99K	ENST00000335790	NM_002315.2	99	Gag/Aag																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251991	8251991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	362	689	1	ENST00000335790.3:c.86G>A	p.Arg29His	p.R29H	ENST00000335790	NM_002315.2	29	cGc/cAc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14303203	14303203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	107	531	1	ENST00000256196.4:c.472G>T	p.Ala158Ser	p.A158S	ENST00000256196		158	Gca/Tca																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741378	17741378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	371	706	1	ENST00000250003.3:c.49G>A	p.Asp17Asn	p.D17N	ENST00000250003	NM_002478.4	17	Gac/Aac																																																																														
WT1	7490	MSKCC	GRCh37	11	32456743	32456743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	250	445	1	ENST00000332351.3:c.149C>A	p.Ala50Asp	p.A50D	ENST00000332351	NM_024426.4	50	gCt/gAt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64128948	64128948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143154193		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	291	607	0	ENST00000334205.4:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000334205	NM_003942.2	193	cGg/cAg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138755	64138755	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	277	484	2	ENST00000334205.4:c.2122G>T	p.Ala708Ser	p.A708S	ENST00000334205	NM_003942.2	708	Gca/Tca																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572200	64572200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	191	271	0	ENST00000337652.1:c.1454G>A	p.Arg485Gln	p.R485Q	ENST00000337652	NM_130803.2	485	cGg/cAg																																																																														
CCND1	595	MSKCC	GRCh37	11	69457911	69457911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	319	451	0	ENST00000227507.2:c.311C>T	p.Ala104Val	p.A104V	ENST00000227507	NM_053056.2	104	gCc/gTc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941313	71941313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	315	623	1	ENST00000298229.2:c.1088G>A	p.Arg363His	p.R363H	ENST00000298229	NM_001567.3	363	cGc/cAc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77043912	77043912	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	217	517	0	ENST00000356341.3:c.1414G>A	p.Ala472Thr	p.A472T	ENST00000356341	NM_002576.4	472	Gcc/Acc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94170371	94170371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	92	316	0	ENST00000323929.3:c.1898G>A	p.Arg633Gln	p.R633Q	ENST00000323929	NM_005591.3	633	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108098413	108098413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	85	357	0	ENST00000278616.4:c.62C>T	p.Thr21Ile	p.T21I	ENST00000278616	NM_000051.3	21	aCa/aTa																																																																														
ATM	472	MSKCC	GRCh37	11	108121727	108121727	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	209	523	0	ENST00000278616.4:c.1535T>G	p.Ile512Ser	p.I512S	ENST00000278616	NM_000051.3	512	aTt/aGt																																																																														
ATM	472	MSKCC	GRCh37	11	108128207	108128207	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	75	262	0	ENST00000278616.4:c.2251-1G>T		p.X751_splice	ENST00000278616	NM_000051.3	751																																																																															
ATM	472	MSKCC	GRCh37	11	108139166	108139166	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	135	476	0	ENST00000278616.4:c.2668C>A	p.Leu890Met	p.L890M	ENST00000278616	NM_000051.3	890	Ctg/Atg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343982	118343982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	41	373	0	ENST00000534358.1:c.2108C>T	p.Thr703Ile	p.T703I	ENST00000534358	NM_005933.3	703	aCt/aTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360843	118360843	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	123	224	0	ENST00000534358.1:c.4576-1G>T		p.X1526_splice	ENST00000534358	NM_005933.3	1526																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118375159	118375159	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	168	343	0	ENST00000534358.1:c.8552A>G	p.Asp2851Gly	p.D2851G	ENST00000534358	NM_005933.3	2851	gAc/gGc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375513	118375513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	144	309	0	ENST00000534358.1:c.8906C>T	p.Ser2969Phe	p.S2969F	ENST00000534358	NM_005933.3	2969	tCt/tTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375933	118375933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	194	462	0	ENST00000534358.1:c.9326C>A	p.Ser3109Tyr	p.S3109Y	ENST00000534358	NM_005933.3	3109	tCt/tAt																																																																														
CBL	867	MSKCC	GRCh37	11	119156097	119156097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	356	648	0	ENST00000264033.4:c.1762G>T	p.Asp588Tyr	p.D588Y	ENST00000264033	NM_005188.3	588	Gac/Tac																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125496693	125496693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	159	295	0	ENST00000428830.2:c.30C>A	p.Asp10Glu	p.D10E	ENST00000428830	NM_001114121.2	10	gaC/gaA																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497679	125497679	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	138	374	0	ENST00000428830.2:c.243T>G	p.Tyr81Ter	p.Y81*	ENST00000428830	NM_001114121.2	81	taT/taG																																																																														
KDM5A	5927	MSKCC	GRCh37	12	475146	475146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	196	546	0	ENST00000399788.2:c.491G>T	p.Arg164Ile	p.R164I	ENST00000399788	NM_001042603.1	164	aGa/aTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18446936	18446936	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	15	284	0	ENST00000266497.5:c.1021G>T	p.Glu341Ter	p.E341*	ENST00000266497		341	Gaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793432	18793432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187869576		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	131	419	0	ENST00000266497.5:c.4129C>T	p.Arg1377Cys	p.R1377C	ENST00000266497		1377	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	178	467	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46233172	46233172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	35	316	0	ENST00000334344.6:c.1391C>T	p.Ala464Val	p.A464V	ENST00000334344	NM_152641.2	464	gCg/gTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244164	46244164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	183	401	0	ENST00000334344.6:c.2258C>A	p.Pro753His	p.P753H	ENST00000334344	NM_152641.2	753	cCt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420090	49420090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	272	541	1	ENST00000301067.7:c.15659G>A	p.Arg5220His	p.R5220H	ENST00000301067	NM_003482.3	5220	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420253	49420253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	330	577	0	ENST00000301067.7:c.15496G>A	p.Ala5166Thr	p.A5166T	ENST00000301067	NM_003482.3	5166	Gct/Act																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436954	49436954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	282	544	1	ENST00000301067.7:c.5549G>A	p.Gly1850Asp	p.G1850D	ENST00000301067	NM_003482.3	1850	gGc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445330	49445330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	110	902	1	ENST00000301067.7:c.2136G>T	p.Glu712Asp	p.E712D	ENST00000301067	NM_003482.3	712	gaG/gaT																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858918	57858918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	345	611	0	ENST00000228682.2:c.414G>T	p.Gln138His	p.Q138H	ENST00000228682	NM_005269.2	138	caG/caT																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864237	57864237	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	279	499	0	ENST00000228682.2:c.1714G>T	p.Glu572Ter	p.E572*	ENST00000228682	NM_005269.2	572	Gag/Tag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865509	57865509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	326	696	1	ENST00000228682.2:c.2986C>T	p.Pro996Ser	p.P996S	ENST00000228682	NM_005269.2	996	Ccc/Tcc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145356	58145356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	336	582	0	ENST00000257904.6:c.145C>A	p.Leu49Ile	p.L49I	ENST00000257904	NM_000075.3	49	Ctt/Att																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811711	102811711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	306	615	0	ENST00000307046.8:c.473G>T	p.Gly158Val	p.G158V	ENST00000307046	NM_001111285.1	158	gGa/gTa																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811775	102811775	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	227	447	0	ENST00000307046.8:c.409C>A	p.Pro137Thr	p.P137T	ENST00000307046	NM_001111285.1	137	Ccc/Acc																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813316	102813316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	46	450	0	ENST00000307046.8:c.373C>T	p.Arg125Cys	p.R125C	ENST00000307046	NM_001111285.1	125	Cgc/Tgc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856154	111856154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	205	237	1	ENST00000341259.2:c.205G>A	p.Asp69Asn	p.D69N	ENST00000341259	NM_005475.2	69	Gac/Aac																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112893803	112893803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	160	378	1	ENST00000351677.2:c.692G>A	p.Arg231Gln	p.R231Q	ENST00000351677	NM_002834.3	231	cGa/cAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112034	115112034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	365	664	0	ENST00000257566.3:c.1706G>T	p.Gly569Val	p.G569V	ENST00000257566	NM_016569.3	569	gGa/gTa																																																																														
MSI1	4440	MSKCC	GRCh37	12	120783945	120783945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	251	530	0	ENST00000257552.2:c.1040G>T	p.Ser347Ile	p.S347I	ENST00000257552	NM_002442.3	347	aGt/aTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133202740	133202740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs5745068		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	279	542	0	ENST00000320574.5:c.6494G>A	p.Arg2165His	p.R2165H	ENST00000320574	NM_006231.2	2165	cGc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133219522	133219522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	191	684	1	ENST00000320574.5:c.4612C>A	p.Leu1538Met	p.L1538M	ENST00000320574	NM_006231.2	1538	Ctg/Atg																																																																														
POLE	5426	MSKCC	GRCh37	12	133249784	133249784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	67	460	0	ENST00000320574.5:c.1439C>T	p.Ala480Val	p.A480V	ENST00000320574	NM_006231.2	480	gCt/gTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133249847	133249847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	219	402	0	ENST00000320574.5:c.1376C>T	p.Ser459Phe	p.S459F	ENST00000320574	NM_006231.2	459	tCt/tTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133253235	133253235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	156	477	1	ENST00000320574.5:c.806C>T	p.Pro269Leu	p.P269L	ENST00000320574	NM_006231.2	269	cCt/cTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133257789	133257789	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143626223		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	314	551	1	ENST00000320574.5:c.139C>T	p.Arg47Trp	p.R47W	ENST00000320574	NM_006231.2	47	Cgg/Tgg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549320	21549320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	358	655	1	ENST00000382592.4:c.2956C>A	p.Pro986Thr	p.P986T	ENST00000382592	NM_014572.2	986	Cca/Aca																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562610	21562610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	140	176	0	ENST00000382592.4:c.1309G>A	p.Ala437Thr	p.A437T	ENST00000382592	NM_014572.2	437	Gcc/Acc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622457	28622457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	191	512	0	ENST00000241453.7:c.1160G>A	p.Arg387Gln	p.R387Q	ENST00000241453	NM_004119.2	387	cGa/cAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28880897	28880897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	213	380	0	ENST00000282397.4:c.3733G>A	p.Asp1245Asn	p.D1245N	ENST00000282397	NM_002019.4	1245	Gac/Aac																																																																														
FLT1	2321	MSKCC	GRCh37	13	28885772	28885772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	127	451	0	ENST00000282397.4:c.3590G>T	p.Ser1197Ile	p.S1197I	ENST00000282397	NM_002019.4	1197	aGt/aTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28886174	28886174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	55	506	2	ENST00000282397.4:c.3448C>A	p.Leu1150Ile	p.L1150I	ENST00000282397	NM_002019.4	1150	Ctt/Att																																																																														
FLT1	2321	MSKCC	GRCh37	13	28903769	28903769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	242	493	0	ENST00000282397.4:c.2690C>T	p.Ala897Val	p.A897V	ENST00000282397	NM_002019.4	897	gCc/gTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005329	29005329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	117	428	0	ENST00000282397.4:c.932G>A	p.Cys311Tyr	p.C311Y	ENST00000282397	NM_002019.4	311	tGt/tAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32890650	32890650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	65	274	0	ENST00000380152.3:c.53G>A	p.Arg18His	p.R18H	ENST00000380152		18	cGc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912948	32912948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	192	488	1	ENST00000380152.3:c.4456G>T	p.Val1486Phe	p.V1486F	ENST00000380152		1486	Gtt/Ttt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913044	32913044	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	187	581	2	ENST00000380152.3:c.4552G>T	p.Glu1518Ter	p.E1518*	ENST00000380152		1518	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914947	32914947	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	109	425	0	ENST00000380152.3:c.6455C>A	p.Ser2152Tyr	p.S2152Y	ENST00000380152		2152	tCt/tAt																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240222	41240222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	51	77	0	ENST00000379561.5:c.128C>T	p.Ala43Val	p.A43V	ENST00000379561	NM_002015.3	43	gCg/gTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48916850	48916850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	89	259	0	ENST00000267163.4:c.380G>A	p.Ser127Asn	p.S127N	ENST00000267163	NM_000321.2	127	aGt/aAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48921968	48921968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	101	274	1	ENST00000267163.4:c.508G>T	p.Glu170Ter	p.E170*	ENST00000267163	NM_000321.2	170	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48939055	48939055	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	109	311	0	ENST00000267163.4:c.887T>G	p.Phe296Cys	p.F296C	ENST00000267163	NM_000321.2	296	tTt/tGt																																																																														
RB1	5925	MSKCC	GRCh37	13	49050942	49050942	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143105337		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	155	378	0	ENST00000267163.4:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000267163	NM_000321.2	876	Cgc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	49054137	49054137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	107	234	0	ENST00000267163.4:c.2717C>A	p.Ser906Tyr	p.S906Y	ENST00000267163	NM_000321.2	906	tCt/tAt																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281680	49281680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	363	752	0	ENST00000282018.3:c.727A>G	p.Arg243Gly	p.R243G	ENST00000282018	NM_020377.2	243	Agg/Ggg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347875	73347875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	45	315	0	ENST00000377767.4:c.1186C>T	p.Arg396Trp	p.R396W	ENST00000377767	NM_014953.3	396	Cgg/Tgg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436246	110436246	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	93	252	0	ENST00000375856.3:c.2155A>C	p.Thr719Pro	p.T719P	ENST00000375856	NM_003749.2	719	Aca/Cca																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066913	30066913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	248	475	0	ENST00000331968.5:c.2218C>T	p.Arg740Trp	p.R740W	ENST00000331968	NM_002742.2	740	Cgg/Tgg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987012	36987012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	237	454	0	ENST00000354822.5:c.677G>A	p.Ser226Asn	p.S226N	ENST00000354822	NM_001079668.2	226	aGc/aAc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68301819	68301819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	186	365	0	ENST00000487270.1:c.221G>A	p.Arg74Lys	p.R74K	ENST00000487270	NM_133509.3	74	aGg/aAg																																																																														
AKT1	207	MSKCC	GRCh37	14	105240263	105240263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	353	636	1	ENST00000349310.3:c.688G>A	p.Ala230Thr	p.A230T	ENST00000349310	NM_001014432.1	230	Gcc/Acc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38617006	38617006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	132	343	0	ENST00000299084.4:c.419T>C	p.Leu140Ser	p.L140S	ENST00000299084	NM_152594.2	140	tTa/tCa																																																																														
RAD51	5888	MSKCC	GRCh37	15	41023362	41023362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	182	397	0	ENST00000267868.3:c.1006G>A	p.Asp336Asn	p.D336N	ENST00000267868	NM_002875.4	336	Gat/Aat																																																																														
MGA	23269	MSKCC	GRCh37	15	41962145	41962145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	106	259	0	ENST00000219905.7:c.1053G>T	p.Glu351Asp	p.E351D	ENST00000219905	NM_001164273.1	351	gaG/gaT																																																																														
MGA	23269	MSKCC	GRCh37	15	42005460	42005460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	56	592	0	ENST00000219905.7:c.3196C>T	p.Arg1066Cys	p.R1066C	ENST00000219905	NM_001164273.1	1066	Cgc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	42019407	42019407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	200	459	0	ENST00000219905.7:c.3460G>A	p.Val1154Ile	p.V1154I	ENST00000219905	NM_001164273.1	1154	Gtt/Att																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707795	43707795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	349	613	0	ENST00000382044.4:c.5086C>T	p.Pro1696Ser	p.P1696S	ENST00000382044	NM_001141980.1	1696	Cct/Tct																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	231	484	0	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																																																														
CD276	80381	MSKCC	GRCh37	15	73994595	73994595	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	95	765	0	ENST00000318443.5:c.80-1G>T		p.X27_splice	ENST00000318443	NM_001024736.1	27																																																																															
CD276	80381	MSKCC	GRCh37	15	74000731	74000731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	329	633	0	ENST00000318443.5:c.1421C>A	p.Ser474Tyr	p.S474Y	ENST00000318443	NM_001024736.1	474	tCt/tAt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472559	88472559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	239	472	1	ENST00000360948.2:c.1996G>A	p.Gly666Ser	p.G666S	ENST00000360948	NM_001012338.2	666	Ggt/Agt																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631671	90631671	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	328	611	0	ENST00000330062.3:c.598G>T	p.Asp200Tyr	p.D200Y	ENST00000330062	NM_002168.2	200	Gat/Tat																																																																														
BLM	641	MSKCC	GRCh37	15	91292947	91292947	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	219	538	0	ENST00000355112.3:c.449C>A	p.Thr150Asn	p.T150N	ENST00000355112	NM_000057.2	150	aCc/aAc																																																																														
BLM	641	MSKCC	GRCh37	15	91352442	91352442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	141	338	0	ENST00000355112.3:c.3827C>T	p.Ala1276Val	p.A1276V	ENST00000355112	NM_000057.2	1276	gCg/gTg																																																																														
BLM	641	MSKCC	GRCh37	15	91352490	91352490	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	37	238	1	ENST00000355112.3:c.3874+1G>A		p.X1292_splice	ENST00000355112	NM_000057.2	1292																																																																															
AXIN1	8312	MSKCC	GRCh37	16	360049	360049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	299	575	0	ENST00000262320.3:c.1040G>T	p.Arg347Met	p.R347M	ENST00000262320	NM_003502.3	347	aGg/aTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2124246	2124246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	189	703	0	ENST00000219476.3:c.2401G>A	p.Ala801Thr	p.A801T	ENST00000219476	NM_000548.3	801	Gcc/Acc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2213953	2213953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	368	640	1	ENST00000326181.6:c.32G>A	p.Arg11His	p.R11H	ENST00000326181	NM_032271.2	11	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778558	3778558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	360	796	0	ENST00000262367.5:c.6490C>A	p.Leu2164Met	p.L2164M	ENST00000262367	NM_004380.2	2164	Ctg/Atg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779676	3779676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	308	718	0	ENST00000262367.5:c.5372C>T	p.Ser1791Leu	p.S1791L	ENST00000262367	NM_004380.2	1791	tCg/tTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786130	3786130	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	322	650	0	ENST00000262367.5:c.4635G>A	p.Trp1545Ter	p.W1545*	ENST00000262367	NM_004380.2	1545	tgG/tgA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900540	3900540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	381	703	1	ENST00000262367.5:c.556C>T	p.Pro186Ser	p.P186S	ENST00000262367	NM_004380.2	186	Cca/Tca																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858613	9858613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	199	428	4	ENST00000330684.3:c.2788C>A	p.Leu930Ile	p.L930I	ENST00000330684	NM_001134407.1	930	Ctc/Atc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934569	9934569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	120	456	0	ENST00000330684.3:c.1586T>G	p.Val529Gly	p.V529G	ENST00000330684	NM_001134407.1	529	gTg/gGg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031919	10031919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	314	574	3	ENST00000330684.3:c.904G>A	p.Ala302Thr	p.A302T	ENST00000330684	NM_001134407.1	302	Gct/Act																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032083	10032083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	296	575	0	ENST00000330684.3:c.740G>A	p.Gly247Asp	p.G247D	ENST00000330684	NM_001134407.1	247	gGc/gAc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041657	14041657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	212	423	0	ENST00000311895.7:c.2204C>A	p.Ser735Tyr	p.S735Y	ENST00000311895	NM_005236.2	735	tCt/tAt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641274	23641274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	307	648	0	ENST00000261584.4:c.2201C>T	p.Thr734Ile	p.T734I	ENST00000261584	NM_024675.3	734	aCt/aTt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646440	23646440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	265	575	0	ENST00000261584.4:c.1427G>T	p.Arg476Ile	p.R476I	ENST00000261584	NM_024675.3	476	aGa/aTa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56878487	56878487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	222	353	0	ENST00000308159.5:c.2426C>T	p.Ala809Val	p.A809V	ENST00000308159	NM_014669.4	809	gCg/gTg																																																																														
CBFB	865	MSKCC	GRCh37	16	67063703	67063703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	155	185	0	ENST00000412916.2:c.152G>T	p.Gly51Val	p.G51V	ENST00000412916		51	gGc/gTc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655380	67655380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	199	461	1	ENST00000264010.4:c.1243C>T	p.Arg415Trp	p.R415W	ENST00000264010	NM_006565.3	415	Cgg/Tgg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655431	67655431	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	244	513	0	ENST00000264010.4:c.1294G>T	p.Glu432Ter	p.E432*	ENST00000264010	NM_006565.3	432	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829283	72829283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	327	619	0	ENST00000268489.5:c.7298C>T	p.Ala2433Val	p.A2433V	ENST00000268489	NM_006885.3	2433	gCg/gTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830100	72830100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	278	521	0	ENST00000268489.5:c.6481C>T	p.Arg2161Trp	p.R2161W	ENST00000268489	NM_006885.3	2161	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830895	72830895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	62	510	0	ENST00000268489.5:c.5686G>A	p.Ala1896Thr	p.A1896T	ENST00000268489	NM_006885.3	1896	Gcc/Acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992422	72992422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	418	795	0	ENST00000268489.5:c.1623G>T	p.Gln541His	p.Q541H	ENST00000268489	NM_006885.3	541	caG/caT																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81973535	81973535	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	201	484	0	ENST00000359376.3:c.3352G>T	p.Glu1118Ter	p.E1118*	ENST00000359376	NM_002661.3	1118	Gag/Tag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351541	89351541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	347	734	0	ENST00000301030.4:c.1409G>A	p.Gly470Glu	p.G470E	ENST00000301030	NM_001256183.1	470	gGa/gAa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805351	89805351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149851163		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	269	507	1	ENST00000389301.3:c.4199G>A	p.Arg1400His	p.R1400H	ENST00000389301	NM_000135.2	1400	cGt/cAt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805355	89805355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	257	496	1	ENST00000389301.3:c.4195G>T	p.Ala1399Ser	p.A1399S	ENST00000389301	NM_000135.2	1399	Gct/Tct																																																																														
FANCA	2175	MSKCC	GRCh37	16	89831335	89831335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	63	531	0	ENST00000389301.3:c.2741G>A	p.Arg914Lys	p.R914K	ENST00000389301	NM_000135.2	914	aGa/aAa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89837020	89837020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	356	642	1	ENST00000389301.3:c.2174C>A	p.Ser725Tyr	p.S725Y	ENST00000389301	NM_000135.2	725	tCt/tAt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89874709	89874709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	266	514	0	ENST00000389301.3:c.589C>A	p.Leu197Met	p.L197M	ENST00000389301	NM_000135.2	197	Ctg/Atg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216433	7216433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	341	694	0	ENST00000380728.2:c.815G>A	p.Arg272His	p.R272H	ENST00000380728		272	cGc/cAc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216782	7216782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	198	452	0	ENST00000380728.2:c.641C>T	p.Ser214Leu	p.S214L	ENST00000380728		214	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	358	628	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	282	546	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	346	630	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983766	15983766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	64	427	1	ENST00000268712.3:c.3356C>A	p.Pro1119His	p.P1119H	ENST00000268712	NM_006311.3	1119	cCt/cAt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16062109	16062109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	226	425	0	ENST00000268712.3:c.697C>T	p.Arg233Cys	p.R233C	ENST00000268712	NM_006311.3	233	Cgc/Tgc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131207	17131207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	398	722	1	ENST00000285071.4:c.245G>A	p.Cys82Tyr	p.C82Y	ENST00000285071	NM_144997.5	82	tGc/tAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29496916	29496916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	87	229	0	ENST00000358273.4:c.487G>A	p.Glu163Lys	p.E163K	ENST00000358273	NM_001042492.2	163	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29653100	29653100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	199	328	0	ENST00000358273.4:c.5098C>A	p.Leu1700Ile	p.L1700I	ENST00000358273	NM_001042492.2	1700	Ctc/Atc																																																																														
NF1	4763	MSKCC	GRCh37	17	29667643	29667643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	172	372	0	ENST00000358273.4:c.7042C>A	p.Leu2348Ile	p.L2348I	ENST00000358273	NM_001042492.2	2348	Ctc/Atc																																																																														
NF1	4763	MSKCC	GRCh37	17	29670081	29670081	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	164	411	0	ENST00000358273.4:c.7117C>T	p.Gln2373Ter	p.Q2373*	ENST00000358273	NM_001042492.2	2373	Caa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29676266	29676266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	96	283	1	ENST00000358273.4:c.7318G>A	p.Ala2440Thr	p.A2440T	ENST00000358273	NM_001042492.2	2440	Gca/Aca																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	90	355	1	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29684332	29684332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	169	451	2	ENST00000358273.4:c.7915C>A	p.Leu2639Ile	p.L2639I	ENST00000358273	NM_001042492.2	2639	Ctt/Att																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428326	33428326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	309	536	3	ENST00000335858.7:c.461G>A	p.Arg154His	p.R154H	ENST00000335858	NM_133629.2	154	cGc/cAc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40353848	40353848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	325	497	1	ENST00000293328.3:c.2272G>A	p.Asp758Asn	p.D758N	ENST00000293328	NM_012448.3	758	Gat/Aat																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375442	40375442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	80	536	0	ENST00000293328.3:c.508G>A	p.Glu170Lys	p.E170K	ENST00000293328	NM_012448.3	170	Gag/Aag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40478169	40478169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	49	544	0	ENST00000264657.5:c.1330G>A	p.Glu444Lys	p.E444K	ENST00000264657	NM_139276.2	444	Gag/Aag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40485784	40485784	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	213	439	0	ENST00000264657.5:c.957-1G>T		p.X319_splice	ENST00000264657	NM_139276.2	319																																																																															
EZH1	2145	MSKCC	GRCh37	17	40870552	40870552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	377	635	0	ENST00000428826.2:c.851C>A	p.Ser284Tyr	p.S284Y	ENST00000428826		284	tCt/tAt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234531	41234531	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	246	527	1	ENST00000357654.3:c.4247C>A	p.Ala1416Asp	p.A1416D	ENST00000357654	NM_007294.3	1416	gCt/gAt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246374	41246374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	209	580	2	ENST00000357654.3:c.1174C>A	p.Leu392Met	p.L392M	ENST00000357654	NM_007294.3	392	Ctg/Atg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41251898	41251898	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	32	336	0	ENST00000357654.3:c.442-1G>A		p.X148_splice	ENST00000357654	NM_007294.3	148																																																																															
BRCA1	672	MSKCC	GRCh37	17	41256222	41256222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	195	430	0	ENST00000357654.3:c.358G>T	p.Asp120Tyr	p.D120Y	ENST00000357654	NM_007294.3	120	Gat/Tat																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440951	56440951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	72	525	1	ENST00000407977.2:c.386C>T	p.Ala129Val	p.A129V	ENST00000407977		129	gCg/gTg																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774184	56774184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	152	353	0	ENST00000337432.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000337432	NM_058216.2	179	Cac/Tac																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761340	59761340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	234	581	2	ENST00000259008.2:c.3067C>T	p.Leu1023Phe	p.L1023F	ENST00000259008	NM_032043.2	1023	Ctc/Ttc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533860	63533860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	258	552	0	ENST00000307078.5:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000307078	NM_004655.3	432	Gag/Aag																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73775251	73775251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	42	382	0	ENST00000254810.4:c.5C>T	p.Ala2Val	p.A2V	ENST00000254810	NM_005324.3	2	gCc/gTc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78867576	78867576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	314	636	0	ENST00000306801.3:c.2312G>T	p.Ser771Ile	p.S771I	ENST00000306801	NM_020761.2	771	aGc/aTc																																																																														
YES1	7525	MSKCC	GRCh37	18	756556	756556	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	160	328	0	ENST00000314574.4:c.271+1G>T		p.X91_splice	ENST00000314574	NM_005433.3	91																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45375016	45375016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	154	385	0	ENST00000262160.6:c.827C>T	p.Ser276Leu	p.S276L	ENST00000262160	NM_005901.5	276	tCg/tTg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56348505	56348505	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	162	289	0	ENST00000348428.3:c.313G>T	p.Glu105Ter	p.E105*	ENST00000348428	NM_006785.3	105	Gaa/Taa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56348545	56348545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	147	271	0	ENST00000348428.3:c.353T>C	p.Val118Ala	p.V118A	ENST00000348428	NM_006785.3	118	gTt/gCt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56377265	56377265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	79	248	0	ENST00000348428.3:c.886C>T	p.Arg296Ter	p.R296*	ENST00000348428	NM_006785.3	296	Cga/Tga																																																																														
MALT1	10892	MSKCC	GRCh37	18	56383182	56383182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	53	179	0	ENST00000348428.3:c.1001C>T	p.Thr334Ile	p.T334I	ENST00000348428	NM_006785.3	334	aCa/aTa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56400688	56400688	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140664950		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	111	295	2	ENST00000348428.3:c.1282G>A	p.Val428Ile	p.V428I	ENST00000348428	NM_006785.3	428	Gtt/Att																																																																														
STK11	6794	MSKCC	GRCh37	19	1220679	1220679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	58	622	0	ENST00000326873.7:c.697G>A	p.Gly233Ser	p.G233S	ENST00000326873	NM_000455.4	233	Ggc/Agc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619347	1619347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	284	378	0	ENST00000344749.5:c.1294C>T	p.Pro432Ser	p.P432S	ENST00000344749	NM_001136139.2	432	Ccc/Tcc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2193750	2193750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	52	607	0	ENST00000398665.3:c.556G>A	p.Glu186Lys	p.E186K	ENST00000398665	NM_032482.2	186	Gag/Aag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2206739	2206739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	258	472	0	ENST00000398665.3:c.799G>A	p.Val267Met	p.V267M	ENST00000398665	NM_032482.2	267	Gtg/Atg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222467	2222467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	256	437	0	ENST00000398665.3:c.3299G>A	p.Ser1100Asn	p.S1100N	ENST00000398665	NM_032482.2	1100	aGc/aAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210541	5210541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	335	608	0	ENST00000357368.4:c.5426C>T	p.Pro1809Leu	p.P1809L	ENST00000357368	NM_002850.3	1809	cCg/cTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221065	5221065	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	322	611	0	ENST00000357368.4:c.3401C>A	p.Ala1134Asp	p.A1134D	ENST00000357368	NM_002850.3	1134	gCt/gAt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244070	5244070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	384	668	3	ENST00000357368.4:c.1412C>A	p.Pro471His	p.P471H	ENST00000357368	NM_002850.3	471	cCc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244185	5244185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	304	590	1	ENST00000357368.4:c.1297G>A	p.Val433Met	p.V433M	ENST00000357368	NM_002850.3	433	Gtg/Atg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244359	5244359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	410	682	0	ENST00000357368.4:c.1123C>T	p.Pro375Ser	p.P375S	ENST00000357368	NM_002850.3	375	Ccg/Tcg																																																																														
INSR	3643	MSKCC	GRCh37	19	7142844	7142844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	237	502	0	ENST00000302850.5:c.2525C>T	p.Ala842Val	p.A842V	ENST00000302850	NM_000208.2	842	gCg/gTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7267839	7267839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	240	485	0	ENST00000302850.5:c.169G>A	p.Glu57Lys	p.E57K	ENST00000302850	NM_000208.2	57	Gaa/Aaa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10284548	10284548	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	91	390	0	ENST00000340748.4:c.634C>T	p.Arg212Ter	p.R212*	ENST00000340748		212	Cga/Tga																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597441	10597441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	340	735	0	ENST00000171111.5:c.1762A>G	p.Thr588Ala	p.T588A	ENST00000171111	NM_203500.1	588	Aca/Gca																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600385	10600385	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	371	748	0	ENST00000171111.5:c.1470C>A	p.Tyr490Ter	p.Y490*	ENST00000171111	NM_203500.1	490	taC/taA																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602797	10602797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	432	745	1	ENST00000171111.5:c.781C>T	p.Arg261Trp	p.R261W	ENST00000171111	NM_203500.1	261	Cgg/Tgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610463	10610463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	61	714	1	ENST00000171111.5:c.247G>T	p.Val83Phe	p.V83F	ENST00000171111	NM_203500.1	83	Gtc/Ttc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11015752	11015752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	219	387	0	ENST00000327064.4:c.346G>A	p.Asp116Asn	p.D116N	ENST00000327064	NM_199141.1	116	Gat/Aat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11135016	11135016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	271	607	0	ENST00000344626.4:c.2983G>A	p.Val995Ile	p.V995I	ENST00000344626	NM_003072.3	995	Gtc/Atc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144798	11144798	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	229	397	1	ENST00000344626.4:c.3874-1G>T		p.X1292_splice	ENST00000344626	NM_003072.3	1292																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15271741	15271741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	73	894	2	ENST00000263388.2:c.6698C>T	p.Ala2233Val	p.A2233V	ENST00000263388	NM_000435.2	2233	gCc/gTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288720	15288720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	31	29	0	ENST00000263388.2:c.4019C>T	p.Ala1340Val	p.A1340V	ENST00000263388	NM_000435.2	1340	gCg/gTg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15378284	15378284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	47	449	0	ENST00000263377.2:c.502G>A	p.Glu168Lys	p.E168K	ENST00000263377	NM_058243.2	168	Gaa/Aaa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15379802	15379802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	207	420	0	ENST00000263377.2:c.337C>T	p.Arg113Cys	p.R113C	ENST00000263377	NM_058243.2	113	Cgc/Tgc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15383764	15383764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	251	561	0	ENST00000263377.2:c.147G>T	p.Glu49Asp	p.E49D	ENST00000263377	NM_058243.2	49	gaG/gaT																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17384996	17384996	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	305	665	0	ENST00000359435.4:c.544+2T>C		p.X182_splice	ENST00000359435	NM_001033549.1	182																																																																															
JAK3	3718	MSKCC	GRCh37	19	17954701	17954701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	379	651	0	ENST00000458235.1:c.193C>T	p.Pro65Ser	p.P65S	ENST00000458235	NM_000215.3	65	Cct/Tct																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266810	18266810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	224	244	0	ENST00000222254.8:c.121C>A	p.Leu41Met	p.L41M	ENST00000222254	NM_005027.3	41	Ctg/Atg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273060	18273060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	370	657	0	ENST00000222254.8:c.950C>T	p.Ala317Val	p.A317V	ENST00000222254	NM_005027.3	317	gCc/gTc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279606	18279606	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	313	669	0	ENST00000222254.8:c.1879A>C	p.Ile627Leu	p.I627L	ENST00000222254	NM_005027.3	627	Atc/Ctc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18956885	18956885	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	270	540	0	ENST00000262803.5:c.328G>T	p.Glu110Ter	p.E110*	ENST00000262803	NM_002911.3	110	Gaa/Taa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18961586	18961586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	84	596	0	ENST00000262803.5:c.719C>A	p.Ser240Tyr	p.S240Y	ENST00000262803	NM_002911.3	240	tCc/tAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18974273	18974273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	271	506	2	ENST00000262803.5:c.2627C>T	p.Pro876Leu	p.P876L	ENST00000262803	NM_002911.3	876	cCg/cTg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976403	18976403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	99	819	0	ENST00000262803.5:c.3053G>A	p.Gly1018Glu	p.G1018E	ENST00000262803	NM_002911.3	1018	gGg/gAg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256767	19256767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	249	491	0	ENST00000162023.5:c.946G>T	p.Val316Phe	p.V316F	ENST00000162023		316	Gtc/Ttc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256818	19256818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	241	473	0	ENST00000162023.5:c.895C>A	p.Leu299Met	p.L299M	ENST00000162023		299	Ctg/Atg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210901	36210901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	331	744	1	ENST00000222270.7:c.652C>T	p.Arg218Trp	p.R218W	ENST00000222270	NM_014727.1	218	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212258	36212258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	351	628	0	ENST00000222270.7:c.2009C>T	p.Pro670Leu	p.P670L	ENST00000222270	NM_014727.1	670	cCt/cTt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222925	36222925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	460	837	0	ENST00000222270.7:c.5554G>A	p.Ala1852Thr	p.A1852T	ENST00000222270	NM_014727.1	1852	Gcc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224199	36224199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	258	441	0	ENST00000222270.7:c.6749G>A	p.Arg2250His	p.R2250H	ENST00000222270	NM_014727.1	2250	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224406	36224406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	413	744	0	ENST00000222270.7:c.6956G>A	p.Gly2319Asp	p.G2319D	ENST00000222270	NM_014727.1	2319	gGc/gAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229435	36229435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	260	491	0	ENST00000222270.7:c.8125C>T	p.Arg2709Cys	p.R2709C	ENST00000222270	NM_014727.1	2709	Cgc/Tgc																																																																														
AKT2	208	MSKCC	GRCh37	19	40744850	40744850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	347	653	0	ENST00000392038.2:c.670C>T	p.Arg224Cys	p.R224C	ENST00000392038	NM_001626.4	224	Cgc/Tgc																																																																														
AXL	558	MSKCC	GRCh37	19	41762394	41762394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	47	638	0	ENST00000301178.4:c.2074G>A	p.Gly692Arg	p.G692R	ENST00000301178	NM_021913.4	692	Ggg/Agg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753319	42753319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	454	858	0	ENST00000222329.4:c.945G>T	p.Gln315His	p.Q315H	ENST00000222329	NM_006494.2	315	caG/caT																																																																														
CIC	23152	MSKCC	GRCh37	19	42788897	42788897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	281	454	0	ENST00000575354.2:c.41C>T	p.Ala14Val	p.A14V	ENST00000575354	NM_015125.3	14	gCg/gTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42793356	42793356	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	103	671	0	ENST00000575354.2:c.1158C>A	p.Tyr386Ter	p.Y386*	ENST00000575354	NM_015125.3	386	taC/taA																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856394	45856394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	372	664	0	ENST00000391945.4:c.1778G>A	p.Gly593Glu	p.G593E	ENST00000391945	NM_000400.3	593	gGg/gAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902267	50902267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	404	850	1	ENST00000440232.2:c.159G>T	p.Gln53His	p.Q53H	ENST00000440232	NM_002691.3	53	caG/caT																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905106	50905106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	356	716	0	ENST00000440232.2:c.388G>A	p.Val130Ile	p.V130I	ENST00000440232	NM_002691.3	130	Gtc/Atc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910328	50910328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	334	779	0	ENST00000440232.2:c.1583T>C	p.Val528Ala	p.V528A	ENST00000440232	NM_002691.3	528	gTg/gCg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919079	50919079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	228	525	0	ENST00000440232.2:c.2816C>T	p.Ser939Leu	p.S939L	ENST00000440232	NM_002691.3	939	tCg/tTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50921136	50921136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	327	620	1	ENST00000440232.2:c.3256C>T	p.Arg1086Trp	p.R1086W	ENST00000440232	NM_002691.3	1086	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52723453	52723453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	232	458	0	ENST00000322088.6:c.1314C>A	p.Phe438Leu	p.F438L	ENST00000322088	NM_014225.5	438	ttC/ttA																																																																														
ALK	238	MSKCC	GRCh37	2	29419652	29419652	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	204	422	0	ENST00000389048.3:c.4148T>G	p.Ile1383Ser	p.I1383S	ENST00000389048	NM_004304.4	1383	aTt/aGt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213098	39213098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	416	738	2	ENST00000402219.2:c.3869C>T	p.Pro1290Leu	p.P1290L	ENST00000402219	NM_005633.3	1290	cCg/cTg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39237762	39237762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	144	344	0	ENST00000402219.2:c.2473A>G	p.Ile825Val	p.I825V	ENST00000402219	NM_005633.3	825	Att/Gtt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249900	39249900	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	194	543	0	ENST00000402219.2:c.1669A>G	p.Thr557Ala	p.T557A	ENST00000402219	NM_005633.3	557	Aca/Gca																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47607082	47607082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	245	501	0	ENST00000263735.4:c.832G>T	p.Ala278Ser	p.A278S	ENST00000263735	NM_002354.2	278	Gca/Tca																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630414	47630414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	300	658	0	ENST00000233146.2:c.84G>T	p.Glu28Asp	p.E28D	ENST00000233146	NM_000251.2	28	gaG/gaT																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703661	47703661	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	213	406	0	ENST00000233146.2:c.2161G>T	p.Gly721Ter	p.G721*	ENST00000233146	NM_000251.2	721	Gga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48023176	48023176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	203	426	0	ENST00000234420.5:c.601G>A	p.Glu201Lys	p.E201K	ENST00000234420	NM_000179.2	201	Gag/Aag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027680	48027680	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	119	271	0	ENST00000234420.5:c.2558A>C	p.Lys853Thr	p.K853T	ENST00000234420	NM_000179.2	853	aAg/aCg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033421	48033421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	137	446	1	ENST00000234420.5:c.3725G>A	p.Arg1242His	p.R1242H	ENST00000234420	NM_000179.2	1242	cGt/cAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033753	48033753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	193	330	0	ENST00000234420.5:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000234420	NM_000179.2	1322	Gaa/Taa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99169368	99169368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	69	456	0	ENST00000074304.5:c.1298C>T	p.Ser433Leu	p.S433L	ENST00000074304	NM_001134224.1	433	tCa/tTa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182177	99182177	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	301	533	0	ENST00000074304.5:c.2242C>T	p.Gln748Ter	p.Q748*	ENST00000074304	NM_001134224.1	748	Cag/Tag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182607	99182607	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	194	378	0	ENST00000074304.5:c.2410A>G	p.Asn804Asp	p.N804D	ENST00000074304	NM_001134224.1	804	Aat/Gat																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907686	111907686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	220	360	0	ENST00000393256.3:c.460C>T	p.Arg154Cys	p.R154C	ENST00000393256	NM_006538.4	154	Cgt/Tgt																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873059	136873059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	195	398	2	ENST00000241393.3:c.439C>T	p.Pro147Ser	p.P147S	ENST00000241393	NM_003467.2	147	Cca/Tca																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	263	576	0	ENST00000397062.3:c.229G>T	p.Asp77Tyr	p.D77Y	ENST00000397062	NM_006164.4	77	Gat/Tat																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265533	198265533	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	136	505	0	ENST00000335508.6:c.2624T>G	p.Ile875Ser	p.I875S	ENST00000335508	NM_012433.2	875	aTt/aGt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266767	198266767	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	218	490	0	ENST00000335508.6:c.2165A>C	p.Glu722Ala	p.E722A	ENST00000335508	NM_012433.2	722	gAa/gCa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273245	198273245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	248	498	0	ENST00000335508.6:c.965C>A	p.Ser322Tyr	p.S322Y	ENST00000335508	NM_012433.2	322	tCt/tAt																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735518	204735518	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	242	444	0	ENST00000302823.3:c.319T>C	p.Ser107Pro	p.S107P	ENST00000302823	NM_005214.4	107	Tcc/Ccc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248588	212248588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	225	444	0	ENST00000342788.4:c.3679C>A	p.Leu1227Met	p.L1227M	ENST00000342788	NM_005235.2	1227	Ctg/Atg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285173	212285173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	121	416	0	ENST00000342788.4:c.3128C>T	p.Ser1043Leu	p.S1043L	ENST00000342788	NM_005235.2	1043	tCg/tTg																																																																														
BARD1	580	MSKCC	GRCh37	2	215617254	215617254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	70	313	0	ENST00000260947.4:c.1594G>A	p.Asp532Asn	p.D532N	ENST00000260947	NM_000465.2	532	Gat/Aat																																																																														
BARD1	580	MSKCC	GRCh37	2	215657143	215657143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	94	306	0	ENST00000260947.4:c.242C>A	p.Thr81Asn	p.T81N	ENST00000260947	NM_000465.2	81	aCt/aAt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225379426	225379426	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	139	502	0	ENST00000264414.4:c.442C>T	p.Arg148Ter	p.R148*	ENST00000264414	NM_003590.4	148	Cga/Tga																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793427	242793427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	52	649	0	ENST00000334409.5:c.650C>A	p.Pro217His	p.P217H	ENST00000334409	NM_005018.2	217	cCt/cAt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520265	9520265	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	166	352	0	ENST00000353224.5:c.2005-1G>A		p.X669_splice	ENST00000353224	NM_177990.2	669																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31021439	31021439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	226	477	1	ENST00000375687.4:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000375687	NM_015338.5	480	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022296	31022296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	206	421	1	ENST00000375687.4:c.1781G>A	p.Cys594Tyr	p.C594Y	ENST00000375687	NM_015338.5	594	tGc/tAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024619	31024619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	265	549	0	ENST00000375687.4:c.4104G>T	p.Lys1368Asn	p.K1368N	ENST00000375687	NM_015338.5	1368	aaG/aaT																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31390266	31390266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	233	466	1	ENST00000328111.2:c.2221G>A	p.Gly741Arg	p.G741R	ENST00000328111	NM_006892.3	741	Ggg/Agg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39726933	39726933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	64	262	1	ENST00000361337.2:c.931G>T	p.Ala311Ser	p.A311S	ENST00000361337	NM_003286.2	311	Gcc/Tcc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750345	39750345	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	177	294	0	ENST00000361337.2:c.1960A>G	p.Lys654Glu	p.K654E	ENST00000361337	NM_003286.2	654	Aag/Gag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980910	40980910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	46	425	0	ENST00000373198.4:c.1576G>A	p.Val526Ile	p.V526I	ENST00000373198	NM_133170.3	526	Gtc/Atc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46250994	46250994	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	149	292	0	ENST00000371998.3:c.3G>T	p.Met1?	p.M1?	ENST00000371998		1	atG/atT																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262791	46262791	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	130	350	2	ENST00000371998.3:c.965-1G>T		p.X322_splice	ENST00000371998		322																																																																															
AURKA	6790	MSKCC	GRCh37	20	54948603	54948603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	124	300	0	ENST00000312783.6:c.715G>A	p.Glu239Lys	p.E239K	ENST00000312783	NM_198436.1	239	Gaa/Aaa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485125	57485125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	159	348	0	ENST00000371085.3:c.959C>A	p.Thr320Asn	p.T320N	ENST00000371085	NM_000516.4	320	aCt/aAt																																																																														
ERG	2078	MSKCC	GRCh37	21	39755543	39755543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	198	478	0	ENST00000288319.7:c.1222C>A	p.Leu408Met	p.L408M	ENST00000288319	NM_182918.3	408	Ctg/Atg																																																																														
ERG	2078	MSKCC	GRCh37	21	39772559	39772559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	172	350	0	ENST00000288319.7:c.682G>T	p.Ala228Ser	p.A228S	ENST00000288319	NM_182918.3	228	Gct/Tct																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29092931	29092931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	190	494	0	ENST00000328354.6:c.1053G>T	p.Glu351Asp	p.E351D	ENST00000328354	NM_007194.3	351	gaG/gaT																																																																														
EP300	2033	MSKCC	GRCh37	22	41513352	41513352	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	272	504	1	ENST00000263253.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000263253	NM_001429.3	86	Cga/Tga																																																																														
EP300	2033	MSKCC	GRCh37	22	41513481	41513481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	81	577	0	ENST00000263253.7:c.385G>A	p.Ala129Thr	p.A129T	ENST00000263253	NM_001429.3	129	Gca/Aca																																																																														
EP300	2033	MSKCC	GRCh37	22	41556655	41556655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	50	407	0	ENST00000263253.7:c.3600C>A	p.Phe1200Leu	p.F1200L	ENST00000263253	NM_001429.3	1200	ttC/ttA																																																																														
RAF1	5894	MSKCC	GRCh37	3	12647733	12647733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	156	333	0	ENST00000251849.4:c.647G>A	p.Arg216His	p.R216H	ENST00000251849	NM_002880.3	216	cGt/cAt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713436	30713436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	307	474	1	ENST00000359013.4:c.836G>A	p.Arg279His	p.R279H	ENST00000359013	NM_001024847.2	279	cGc/cAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158131	47158131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	76	431	2	ENST00000409792.3:c.4568G>A	p.Arg1523His	p.R1523H	ENST00000409792	NM_014159.6	1523	cGt/cAt																																																																														
MST1	4485	MSKCC	GRCh37	3	49721866	49721866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	87	216	1	ENST00000449682.2:c.1897C>A	p.Leu633Ile	p.L633I	ENST00000449682	NM_020998.3	633	Cta/Ata																																																																														
MST1	4485	MSKCC	GRCh37	3	49723617	49723617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	107	161	0	ENST00000449682.2:c.1025G>A	p.Arg342Gln	p.R342Q	ENST00000449682	NM_020998.3	342	cGg/cAg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934984	49934984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	80	631	0	ENST00000296474.3:c.2015G>T	p.Gly672Val	p.G672V	ENST00000296474	NM_002447.2	672	gGc/gTc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940127	49940127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	327	629	1	ENST00000296474.3:c.916C>T	p.Arg306Cys	p.R306C	ENST00000296474	NM_002447.2	306	Cgc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637735	52637735	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	127	341	0	ENST00000394830.3:c.2581A>G	p.Ile861Val	p.I861V	ENST00000394830	NM_018313.4	861	Ata/Gta																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682413	52682413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	111	327	0	ENST00000394830.3:c.760C>A	p.Leu254Ile	p.L254I	ENST00000394830	NM_018313.4	254	Ctc/Atc																																																																														
MITF	4286	MSKCC	GRCh37	3	69987054	69987054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	285	528	0	ENST00000352241.4:c.436A>G	p.Thr146Ala	p.T146A	ENST00000352241	NM_198159.2	146	Act/Gct																																																																														
MITF	4286	MSKCC	GRCh37	3	70008542	70008542	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202020443		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	219	346	0	ENST00000352241.4:c.1132G>A	p.Ala378Thr	p.A378T	ENST00000352241	NM_198159.2	378	Gcc/Acc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259607	89259607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	119	336	0	ENST00000336596.2:c.751C>T	p.Leu251Phe	p.L251F	ENST00000336596	NM_005233.5	251	Ctt/Ttt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391030	89391030	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	264	517	0	ENST00000336596.2:c.1096T>C	p.Cys366Arg	p.C366R	ENST00000336596	NM_005233.5	366	Tgt/Cgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468516	89468516	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	117	299	0	ENST00000336596.2:c.2050C>T	p.Arg684Ter	p.R684*	ENST00000336596	NM_005233.5	684	Cga/Tga																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582302	119582302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	197	275	0	ENST00000316626.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000316626		367	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670282	134670282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	243	499	0	ENST00000398015.3:c.193G>A	p.Glu65Lys	p.E65K	ENST00000398015	NM_004441.4	65	Gag/Aag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911638	134911638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	152	320	0	ENST00000398015.3:c.2103G>T	p.Glu701Asp	p.E701D	ENST00000398015	NM_004441.4	701	gaG/gaT																																																																														
ATR	545	MSKCC	GRCh37	3	142272858	142272858	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	91	321	0	ENST00000350721.4:c.2342-1G>A		p.X781_splice	ENST00000350721	NM_001184.3	781																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	178	566	0	ENST00000263967.3:c.241G>T	p.Glu81Ter	p.E81*	ENST00000263967	NM_006218.2	81	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936067	178936067	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	120	356	0	ENST00000263967.3:c.1609C>T	p.Arg537Ter	p.R537*	ENST00000263967	NM_006218.2	537	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937027	178937027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	98	383	0	ENST00000263967.3:c.1708C>A	p.Leu570Met	p.L570M	ENST00000263967	NM_006218.2	570	Ctg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947796	178947796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	53	225	0	ENST00000263967.3:c.2671G>T	p.Asp891Tyr	p.D891Y	ENST00000263967	NM_006218.2	891	Gat/Tat																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430444	181430444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	357	518	0	ENST00000325404.1:c.296C>T	p.Ala99Val	p.A99V	ENST00000325404	NM_003106.3	99	gCg/gTg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155301	185155301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140999720		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	157	431	0	ENST00000265026.3:c.542C>T	p.Ala181Val	p.A181V	ENST00000265026	NM_004721.4	181	gCg/gTg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185184733	185184733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	178	341	0	ENST00000265026.3:c.1625C>A	p.Ser542Tyr	p.S542Y	ENST00000265026	NM_004721.4	542	tCt/tAt																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186506990	186506990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	113	223	0	ENST00000323963.5:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000323963		386	Cgt/Tgt																																																																														
BCL6	604	MSKCC	GRCh37	3	187447660	187447660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	332	637	0	ENST00000232014.4:c.533G>T	p.Arg178Ile	p.R178I	ENST00000232014	NM_001130845.1	178	aGa/aTa																																																																														
TP63	8626	MSKCC	GRCh37	3	189526092	189526092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	274	588	0	ENST00000264731.3:c.356G>A	p.Ser119Asn	p.S119N	ENST00000264731	NM_003722.4	119	aGc/aAc																																																																														
TP63	8626	MSKCC	GRCh37	3	189586455	189586455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	237	465	0	ENST00000264731.3:c.1079G>T	p.Arg360Ile	p.R360I	ENST00000264731	NM_003722.4	360	aGa/aTa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902586	1902586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	330	645	1	ENST00000382891.5:c.205G>A	p.Asp69Asn	p.D69N	ENST00000382891	NM_133335.3	69	Gac/Aac																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902589	1902589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	319	644	1	ENST00000382891.5:c.208G>A	p.Ala70Thr	p.A70T	ENST00000382891	NM_133335.3	70	Gcc/Acc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747984	41747984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	49	69	0	ENST00000226382.2:c.785G>A	p.Gly262Asp	p.G262D	ENST00000226382	NM_003924.3	262	gGc/gAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138645	55138645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	244	411	0	ENST00000257290.5:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000257290	NM_006206.4	441	cCg/cTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55564641	55564641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	272	494	4	ENST00000288135.5:c.529C>T	p.Arg177Cys	p.R177C	ENST00000288135	NM_000222.2	177	Cgc/Tgc																																																																														
KIT	3815	MSKCC	GRCh37	4	55598161	55598161	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs202144208		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	157	314	0	ENST00000288135.5:c.2358G>T	p.Lys786Asn	p.K786N	ENST00000288135	NM_000222.2	786	aaG/aaT																																																																														
KIT	3815	MSKCC	GRCh37	4	55602667	55602667	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	28	248	1	ENST00000288135.5:c.2488C>T	p.Arg830Ter	p.R830*	ENST00000288135	NM_000222.2	830	Cga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55946156	55946156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	164	286	0	ENST00000263923.4:c.4023G>T	p.Gln1341His	p.Q1341H	ENST00000263923	NM_002253.2	1341	caG/caT																																																																														
KDR	3791	MSKCC	GRCh37	4	55981210	55981210	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	102	333	0	ENST00000263923.4:c.490-1G>T		p.X164_splice	ENST00000263923	NM_002253.2	164																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280112	66280112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	111	281	0	ENST00000273854.3:c.1577C>T	p.Thr526Ile	p.T526I	ENST00000273854	NM_004439.5	526	aCt/aTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356355	66356355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	39	393	1	ENST00000273854.3:c.1142C>T	p.Ala381Val	p.A381V	ENST00000273854	NM_004439.5	381	gCt/gTt																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99806158	99806158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	69	252	0	ENST00000280892.6:c.514G>A	p.Ala172Thr	p.A172T	ENST00000280892	NM_001130678.1	172	Gct/Act																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003277	143003277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	214	459	0	ENST00000262992.4:c.2549C>T	p.Ser850Leu	p.S850L	ENST00000262992	NM_001101669.1	850	tCg/tTg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159105	143159105	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	112	353	3	ENST00000262992.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000262992	NM_001101669.1	250	Cga/Tga																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143181669	143181669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	145	431	0	ENST00000262992.4:c.664G>T	p.Asp222Tyr	p.D222Y	ENST00000262992	NM_001101669.1	222	Gat/Tat																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143226689	143226689	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs149208667		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	145	303	0	ENST00000262992.4:c.425G>A	p.Arg142Gln	p.R142Q	ENST00000262992	NM_001101669.1	142	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258965	153258965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	43	218	0	ENST00000281708.4:c.850C>T	p.Leu284Phe	p.L284F	ENST00000281708	NM_033632.3	284	Ctc/Ttc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187527368	187527368	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	337	325	0	ENST00000441802.2:c.10207-1G>T		p.X3403_splice	ENST00000441802	NM_005245.3	3403																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539443	187539443	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	111	375	0	ENST00000441802.2:c.8297T>G	p.Leu2766Arg	p.L2766R	ENST00000441802	NM_005245.3	2766	cTt/cGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539969	187539969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	196	386	1	ENST00000441802.2:c.7771G>T	p.Asp2591Tyr	p.D2591Y	ENST00000441802	NM_005245.3	2591	Gac/Tac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542246	187542246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	212	369	0	ENST00000441802.2:c.5494G>A	p.Val1832Ile	p.V1832I	ENST00000441802	NM_005245.3	1832	Gta/Ata																																																																														
SDHA	6389	MSKCC	GRCh37	5	224587	224587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	297	522	0	ENST00000264932.6:c.263C>T	p.Ala88Val	p.A88V	ENST00000264932	NM_004168.2	88	gCa/gTa																																																																														
SDHA	6389	MSKCC	GRCh37	5	224599	224599	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	242	445	0	ENST00000264932.6:c.275A>T	p.Lys92Met	p.K92M	ENST00000264932	NM_004168.2	92	aAg/aTg																																																																														
SDHA	6389	MSKCC	GRCh37	5	224636	224636	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	92	186	0	ENST00000264932.6:c.312G>T	p.Gln104His	p.Q104H	ENST00000264932	NM_004168.2	104	caG/caT																																																																														
SDHA	6389	MSKCC	GRCh37	5	225634	225634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	266	456	0	ENST00000264932.6:c.413C>T	p.Ala138Val	p.A138V	ENST00000264932	NM_004168.2	138	gCc/gTc																																																																														
SDHA	6389	MSKCC	GRCh37	5	233697	233697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	306	470	0	ENST00000264932.6:c.1001C>T	p.Ala334Val	p.A334V	ENST00000264932	NM_004168.2	334	gCg/gTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31424539	31424539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	305	638	0	ENST00000344624.3:c.3256C>T	p.Leu1086Phe	p.L1086F	ENST00000344624		1086	Ctc/Ttc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950727	38950727	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	69	253	0	ENST00000357387.3:c.3223C>T	p.Arg1075Ter	p.R1075*	ENST00000357387	NM_152756.3	1075	Cga/Tga																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168704	56168704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	40	354	0	ENST00000399503.3:c.1558C>T	p.Gln520Ter	p.Q520*	ENST00000399503	NM_005921.1	520	Cag/Tag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56176614	56176614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	160	340	0	ENST00000399503.3:c.2164G>T	p.Glu722Ter	p.E722*	ENST00000399503	NM_005921.1	722	Gaa/Taa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177447	56177447	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	141	312	0	ENST00000399503.3:c.2420A>C	p.Asn807Thr	p.N807T	ENST00000399503	NM_005921.1	807	aAt/aCt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754564	57754564	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	116	371	0	ENST00000274289.3:c.483C>A	p.Tyr161Ter	p.Y161*	ENST00000274289	NM_006622.3	161	taC/taA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522532	67522532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	61	177	0	ENST00000274335.5:c.29C>T	p.Ala10Val	p.A10V	ENST00000274335		10	gCg/gTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589609	67589609	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	81	235	0	ENST00000274335.5:c.1372G>T	p.Glu458Ter	p.E458*	ENST00000274335		458	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	70	232	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593382	67593382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	68	212	0	ENST00000274335.5:c.2128C>A	p.Leu710Ile	p.L710I	ENST00000274335		710	Ctc/Atc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564335	86564335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	224	378	1	ENST00000274376.6:c.67G>A	p.Ala23Thr	p.A23T	ENST00000274376	NM_002890.2	23	Gcg/Acg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564734	86564734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	204	665	1	ENST00000274376.6:c.466G>T	p.Gly156Cys	p.G156C	ENST00000274376	NM_002890.2	156	Ggt/Tgt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628362	86628362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	81	280	0	ENST00000274376.6:c.731G>A	p.Arg244Lys	p.R244K	ENST00000274376	NM_002890.2	244	aGa/aAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86629147	86629147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	94	279	0	ENST00000274376.6:c.892G>T	p.Glu298Ter	p.E298*	ENST00000274376	NM_002890.2	298	Gaa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86686620	86686620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	93	233	1	ENST00000274376.6:c.3064G>A	p.Val1022Ile	p.V1022I	ENST00000274376	NM_002890.2	1022	Gta/Ata																																																																														
APC	324	MSKCC	GRCh37	5	112154923	112154923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	66	605	0	ENST00000257430.4:c.1194G>T	p.Lys398Asn	p.K398N	ENST00000257430	NM_000038.5	398	aaG/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112162851	112162851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	102	411	0	ENST00000257430.4:c.1455G>A	p.Met485Ile	p.M485I	ENST00000257430	NM_000038.5	485	atG/atA																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	25	309	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112176234	112176234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	229	460	0	ENST00000257430.4:c.4943C>A	p.Pro1648His	p.P1648H	ENST00000257430	NM_000038.5	1648	cCt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112178025	112178025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	216	414	0	ENST00000257430.4:c.6734C>A	p.Pro2245His	p.P2245H	ENST00000257430	NM_000038.5	2245	cCt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112179635	112179635	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	52	384	0	ENST00000257430.4:c.8344A>G	p.Thr2782Ala	p.T2782A	ENST00000257430	NM_000038.5	2782	Act/Gct																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915032	131915032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	112	339	0	ENST00000265335.6:c.389G>A	p.Ser130Asn	p.S130N	ENST00000265335		130	aGc/aAc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149503914	149503914	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56339845		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	58	521	0	ENST00000261799.4:c.1922G>A	p.Arg641His	p.R641H	ENST00000261799	NM_002609.3	641	cGc/cAc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505007	149505007	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	149	322	0	ENST00000261799.4:c.1807+1G>A		p.X603_splice	ENST00000261799	NM_002609.3	603																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149514342	149514342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	199	459	0	ENST00000261799.4:c.602C>A	p.Ser201Tyr	p.S201Y	ENST00000261799	NM_002609.3	201	tCt/tAt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514472	149514472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	299	571	0	ENST00000261799.4:c.472G>A	p.Val158Met	p.V158M	ENST00000261799	NM_002609.3	158	Gtg/Atg																																																																														
NPM1	4869	MSKCC	GRCh37	5	170818375	170818375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	161	239	0	ENST00000296930.5:c.205G>T	p.Gly69Cys	p.G69C	ENST00000296930	NM_002520.6	69	Ggc/Tgc																																																																														
NPM1	4869	MSKCC	GRCh37	5	170819785	170819785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	167	323	0	ENST00000296930.5:c.424C>T	p.Arg142Trp	p.R142W	ENST00000296930	NM_002520.6	142	Cgg/Tgg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523708	176523708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	342	736	0	ENST00000292408.4:c.2119C>T	p.Arg707Trp	p.R707W	ENST00000292408	NM_213647.1	707	Cgg/Tgg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562130	176562130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	222	472	0	ENST00000439151.2:c.26G>T	p.Arg9Ile	p.R9I	ENST00000439151	NM_022455.4	9	aGa/aTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176639098	176639098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	145	494	0	ENST00000439151.2:c.3698G>A	p.Arg1233Gln	p.R1233Q	ENST00000439151	NM_022455.4	1233	cGg/cAg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176639128	176639128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	272	511	1	ENST00000439151.2:c.3728G>T	p.Ser1243Ile	p.S1243I	ENST00000439151	NM_022455.4	1243	aGc/aTc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180050997	180050997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	396	737	0	ENST00000261937.6:c.1486G>A	p.Asp496Asn	p.D496N	ENST00000261937	NM_182925.4	496	Gat/Aat																																																																														
IRF4	3662	MSKCC	GRCh37	6	393304	393304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	325	401	0	ENST00000380956.4:c.152G>A	p.Arg51His	p.R51H	ENST00000380956	NM_001195286.1	51	cGc/cAc																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045864	26045864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	81	545	2	ENST00000540144.1:c.226G>A	p.Ala76Thr	p.A76T	ENST00000540144	NM_003531.2	76	Gcc/Acc																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197183	26197183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	267	526	0	ENST00000356476.2:c.296C>T	p.Ala99Val	p.A99V	ENST00000356476		99	gCc/gTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671841	30671841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	64	710	0	ENST00000376406.3:c.5119G>T	p.Asp1707Tyr	p.D1707Y	ENST00000376406	NM_014641.2	1707	Gac/Tac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679915	30679915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	200	410	1	ENST00000376406.3:c.1804G>A	p.Ala602Thr	p.A602T	ENST00000376406	NM_014641.2	602	Gca/Aca																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324540	31324540	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	501	699	0	ENST00000412585.2:c.268A>C	p.Ile90Leu	p.I90L	ENST00000412585	NM_005514.6	90	Atc/Ctc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184977	32184977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	648	626	0	ENST00000375023.3:c.1691G>T	p.Gly564Val	p.G564V	ENST00000375023	NM_004557.3	564	gGg/gTg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805548	32805548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	444	723	0	ENST00000374899.4:c.463G>A	p.Ala155Thr	p.A155T	ENST00000374899	NM_018833.2	155	Gcc/Acc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821568	32821568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	52	743	1	ENST00000354258.4:c.26G>T	p.Gly9Val	p.G9V	ENST00000354258	NM_000593.5	9	gGa/gTa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288743	33288743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	219	449	0	ENST00000374542.5:c.809G>A	p.Arg270His	p.R270H	ENST00000374542	NM_001141970.1	270	cGc/cAc																																																																														
PIM1	5292	MSKCC	GRCh37	6	37138924	37138924	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	289	580	0	ENST00000373509.5:c.264G>T	p.Met88Ile	p.M88I	ENST00000373509	NM_002648.3	88	atG/atT																																																																														
CCND3	896	MSKCC	GRCh37	6	41905026	41905026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	265	425	0	ENST00000372991.4:c.521G>A	p.Arg174Gln	p.R174Q	ENST00000372991	NM_001760.3	174	cGa/cAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974387	93974387	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	137	378	0	ENST00000369303.4:c.1667T>C	p.Ile556Thr	p.I556T	ENST00000369303	NM_004440.3	556	aTt/aCt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638326	117638326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	159	362	2	ENST00000368508.3:c.6115C>T	p.Arg2039Cys	p.R2039C	ENST00000368508	NM_002944.2	2039	Cgt/Tgt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658421	117658421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	150	536	0	ENST00000368508.3:c.5162C>T	p.Pro1721Leu	p.P1721L	ENST00000368508	NM_002944.2	1721	cCt/cTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674333	117674333	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	134	322	0	ENST00000368508.3:c.4142-1G>A		p.X1381_splice	ENST00000368508	NM_002944.2	1381																																																																															
LATS1	9113	MSKCC	GRCh37	6	150001583	150001583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	99	360	0	ENST00000253339.5:c.2021C>T	p.Ser674Phe	p.S674F	ENST00000253339		674	tCt/tTt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004302	150004302	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs35163691		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	95	387	0	ENST00000253339.5:c.1923C>A	p.Phe641Leu	p.F641L	ENST00000253339		641	ttC/ttA																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005204	150005204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	205	396	0	ENST00000253339.5:c.1021C>T	p.Pro341Ser	p.P341S	ENST00000253339		341	Cca/Tca																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129413	152129413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	215	362	0	ENST00000206249.3:c.366G>T	p.Gln122His	p.Q122H	ENST00000206249	NM_000125.3	122	caG/caT																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265535	152265535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	301	463	0	ENST00000206249.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000206249	NM_000125.3	330	Gag/Aag																																																																														
PARK2	5071	MSKCC	GRCh37	6	162394441	162394441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	133	337	0	ENST00000366898.1:c.627C>A	p.Phe209Leu	p.F209L	ENST00000366898	NM_004562.2	209	ttC/ttA																																																																														
PARK2	5071	MSKCC	GRCh37	6	162394447	162394447	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	129	322	0	ENST00000366898.1:c.621A>T	p.Glu207Asp	p.E207D	ENST00000366898	NM_004562.2	207	gaA/gaT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959225	2959225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	335	654	0	ENST00000396946.4:c.2291A>G	p.Asp764Gly	p.D764G	ENST00000396946	NM_032415.4	764	gAc/gGc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2972174	2972174	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	314	598	0	ENST00000396946.4:c.1565T>G	p.Phe522Cys	p.F522C	ENST00000396946	NM_032415.4	522	tTt/tGt																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729566	41729566	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	248	555	1	ENST00000242208.4:c.963C>A	p.Cys321Ter	p.C321*	ENST00000242208	NM_002192.2	321	tgC/tgA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55220274	55220274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	387	651	1	ENST00000275493.2:c.664C>T	p.Arg222Cys	p.R222C	ENST00000275493	NM_005228.3	222	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55229238	55229238	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	236	393	0	ENST00000275493.2:c.1545C>A	p.Cys515Ter	p.C515*	ENST00000275493	NM_005228.3	515	tgC/tgA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241704	55241704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	303	602	0	ENST00000275493.2:c.2152C>A	p.Leu718Met	p.L718M	ENST00000275493	NM_005228.3	718	Ctg/Atg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241726	55241726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	220	516	0	ENST00000275493.2:c.2174C>T	p.Thr725Met	p.T725M	ENST00000275493	NM_005228.3	725	aCg/aTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513165	106513165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	117	262	2	ENST00000359195.3:c.2069G>T	p.Arg690Ile	p.R690I	ENST00000359195	NM_002649.2	690	aGa/aTa																																																																														
MET	4233	MSKCC	GRCh37	7	116397696	116397696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	35	453	0	ENST00000397752.3:c.1970C>T	p.Pro657Leu	p.P657L	ENST00000397752	NM_000245.2	657	cCt/cTt																																																																														
MET	4233	MSKCC	GRCh37	7	116418907	116418907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	193	377	1	ENST00000397752.3:c.3418C>T	p.Leu1140Phe	p.L1140F	ENST00000397752	NM_000245.2	1140	Ctc/Ttc																																																																														
MET	4233	MSKCC	GRCh37	7	116436021	116436021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	74	603	0	ENST00000397752.3:c.4016C>T	p.Ala1339Val	p.A1339V	ENST00000397752	NM_000245.2	1339	gCg/gTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128851930	128851930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	323	656	0	ENST00000249373.3:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000249373	NM_005631.4	668	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140434546	140434546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	106	215	0	ENST00000288602.6:c.2152G>A	p.Ala718Thr	p.A718T	ENST00000288602	NM_004333.4	718	Gcc/Acc																																																																														
BRAF	673	MSKCC	GRCh37	7	140477867	140477867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	106	399	0	ENST00000288602.6:c.1441G>A	p.Ala481Thr	p.A481T	ENST00000288602	NM_004333.4	481	Gca/Aca																																																																														
BRAF	673	MSKCC	GRCh37	7	140494206	140494206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	363	709	0	ENST00000288602.6:c.1042C>A	p.Pro348Thr	p.P348T	ENST00000288602	NM_004333.4	348	Cca/Aca																																																																														
EZH2	2146	MSKCC	GRCh37	7	148504761	148504761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	249	448	0	ENST00000320356.2:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000320356	NM_004456.4	745	Gaa/Aaa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148512042	148512042	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	203	328	0	ENST00000320356.2:c.1636A>C	p.Asn546His	p.N546H	ENST00000320356	NM_004456.4	546	Aat/Cat																																																																														
EZH2	2146	MSKCC	GRCh37	7	148544273	148544273	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	47	313	0	ENST00000320356.2:c.117+1G>T		p.X39_splice	ENST00000320356	NM_004456.4	39																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151859311	151859311	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	133	300	0	ENST00000262189.6:c.11351A>C	p.Lys3784Thr	p.K3784T	ENST00000262189	NM_170606.2	3784	aAa/aCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864304	151864304	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	224	436	0	ENST00000262189.6:c.9677T>G	p.Phe3226Cys	p.F3226C	ENST00000262189	NM_170606.2	3226	tTt/tGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874476	151874476	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	33	352	0	ENST00000262189.6:c.8062A>C	p.Lys2688Gln	p.K2688Q	ENST00000262189	NM_170606.2	2688	Aaa/Caa																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538882	23538882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	210	449	0	ENST00000380871.4:c.557C>T	p.Ser186Leu	p.S186L	ENST00000380871	NM_006167.3	186	tCg/tTg																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538920	23538920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	287	560	1	ENST00000380871.4:c.519G>T	p.Gln173His	p.Q173H	ENST00000380871	NM_006167.3	173	caG/caT																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38135879	38135879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	269	490	0	ENST00000317025.8:c.3812C>T	p.Thr1271Met	p.T1271M	ENST00000317025	NM_023034.1	1271	aCg/aTg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205524	38205524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	298	700	0	ENST00000317025.8:c.166G>T	p.Gly56Cys	p.G56C	ENST00000317025	NM_023034.1	56	Ggc/Tgc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287386	38287386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	275	540	0	ENST00000425967.3:c.271C>T	p.Arg91Trp	p.R91W	ENST00000425967	NM_001174067.1	91	Cgg/Tgg																																																																														
NBN	4683	MSKCC	GRCh37	8	90983401	90983401	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	79	274	0	ENST00000265433.3:c.702G>T	p.Gln234His	p.Q234H	ENST00000265433	NM_002485.4	234	caG/caT																																																																														
MYC	4609	MSKCC	GRCh37	8	128752819	128752819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	93	293	0	ENST00000377970.2:c.980C>T	p.Pro327Leu	p.P327L	ENST00000377970	NM_002467.4	327	cCt/cTt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141551447	141551447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	238	455	0	ENST00000220592.5:c.1850G>T	p.Ser617Ile	p.S617I	ENST00000220592	NM_012154.3	617	aGc/aTc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141568583	141568583	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	328	503	0	ENST00000220592.5:c.878+1G>A		p.X293_splice	ENST00000220592	NM_012154.3	293																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145742015	145742015	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	371	635	0	ENST00000428558.2:c.488C>A	p.Pro163His	p.P163H	ENST00000428558	NM_004260.3	163	cCt/cAt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054750	5054750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	98	319	0	ENST00000381652.3:c.802G>A	p.Glu268Lys	p.E268K	ENST00000381652	NM_004972.3	268	Gag/Aag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072541	5072541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	100	352	0	ENST00000381652.3:c.1691G>A	p.Arg564Gln	p.R564Q	ENST00000381652	NM_004972.3	564	cGa/cAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080656	5080656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	117	363	0	ENST00000381652.3:c.2407C>T	p.Arg803Ter	p.R803*	ENST00000381652	NM_004972.3	803	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341925	8341925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	122	368	1	ENST00000356435.5:c.4715G>T	p.Arg1572Ile	p.R1572I	ENST00000356435		1572	aGa/aTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471048	8471048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	129	366	0	ENST00000356435.5:c.3451C>T	p.Arg1151Cys	p.R1151C	ENST00000356435		1151	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486004	8486004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	237	511	0	ENST00000356435.5:c.2813C>A	p.Ser938Tyr	p.S938Y	ENST00000356435		938	tCt/tAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500947	8500947	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	178	376	0	ENST00000356435.5:c.1935C>A	p.Tyr645Ter	p.Y645*	ENST00000356435		645	taC/taA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521481	8521481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	261	514	0	ENST00000356435.5:c.757G>A	p.Val253Ile	p.V253I	ENST00000356435		253	Gtt/Att																																																																														
TEK	7010	MSKCC	GRCh37	9	27157948	27157948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	40	541	0	ENST00000380036.4:c.172G>A	p.Gly58Arg	p.G58R	ENST00000380036	NM_000459.3	58	Gga/Aga																																																																														
TEK	7010	MSKCC	GRCh37	9	27197484	27197484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	325	649	0	ENST00000380036.4:c.1796C>T	p.Ser599Leu	p.S599L	ENST00000380036	NM_000459.3	599	tCg/tTg																																																																														
TEK	7010	MSKCC	GRCh37	9	27206739	27206739	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147231791		P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	253	490	0	ENST00000380036.4:c.2524C>T	p.Arg842Cys	p.R842C	ENST00000380036	NM_000459.3	842	Cgc/Tgc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209415	98209415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	288	618	1	ENST00000331920.6:c.4123G>A	p.Ala1375Thr	p.A1375T	ENST00000331920	NM_000264.3	1375	Gcc/Acc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894949	101894949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	118	275	0	ENST00000374994.4:c.502C>T	p.Arg168Cys	p.R168C	ENST00000374994	NM_004612.2	168	Cgc/Tgc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128347905	128347905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	213	644	0	ENST00000265960.3:c.600C>A	p.Ser200Arg	p.S200R	ENST00000265960	NM_001006617.1	200	agC/agA																																																																														
ABL1	25	MSKCC	GRCh37	9	133755968	133755968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	300	574	0	ENST00000318560.5:c.1595C>T	p.Thr532Met	p.T532M	ENST00000318560	NM_005157.4	532	aCg/aTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759698	133759698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	299	670	0	ENST00000318560.5:c.2021G>A	p.Arg674Gln	p.R674Q	ENST00000318560	NM_005157.4	674	cGg/cAg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137293477	137293477	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	438	860	1	ENST00000481739.1:c.29-1G>A		p.X10_splice	ENST00000481739	NM_002957.4	10																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399191	139399191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	72	512	0	ENST00000277541.6:c.4952C>T	p.Ser1651Leu	p.S1651L	ENST00000277541	NM_017617.3	1651	tCg/tTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399286	139399286	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	79	647	1	ENST00000277541.6:c.4857C>A	p.Tyr1619Ter	p.Y1619*	ENST00000277541	NM_017617.3	1619	taC/taA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399387	139399387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	102	609	0	ENST00000277541.6:c.4756C>T	p.Arg1586Cys	p.R1586C	ENST00000277541	NM_017617.3	1586	Cgc/Tgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399766	139399766	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	300	505	0	ENST00000277541.6:c.4582T>C	p.Cys1528Arg	p.C1528R	ENST00000277541	NM_017617.3	1528	Tgc/Cgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399777	139399777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	265	553	1	ENST00000277541.6:c.4571C>T	p.Ala1524Val	p.A1524V	ENST00000277541	NM_017617.3	1524	gCg/gTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399834	139399834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	98	763	0	ENST00000277541.6:c.4514G>A	p.Cys1505Tyr	p.C1505Y	ENST00000277541	NM_017617.3	1505	tGt/tAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139403409	139403409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	401	704	0	ENST00000277541.6:c.3084G>T	p.Gln1028His	p.Q1028H	ENST00000277541	NM_017617.3	1028	caG/caT																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139562805	139562805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	340	737	0	ENST00000308874.7:c.71A>G	p.Tyr24Cys	p.Y24C	ENST00000308874		24	tAc/tGc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314987	1314987	+	downstream_gene_variant	3'Flank	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	297	801	0				ENST00000381566																																																																																	
ZRSR2	8233	MSKCC	GRCh37	X	15827393	15827393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	186	462	0	ENST00000307771.7:c.509C>A	p.Ala170Asp	p.A170D	ENST00000307771	NM_005089.3	170	gCt/gAt																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841229	15841229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	114	193	0	ENST00000307771.7:c.1313G>A	p.Gly438Asp	p.G438D	ENST00000307771	NM_005089.3	438	gGc/gAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914723	39914723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	230	471	0	ENST00000378444.4:c.4639C>T	p.Arg1547Ter	p.R1547*	ENST00000378444	NM_001123385.1	1547	Cga/Tga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922009	39922009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	260	543	2	ENST00000378444.4:c.4163C>T	p.Ala1388Val	p.A1388V	ENST00000378444	NM_001123385.1	1388	gCc/gTc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931931	39931931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	86	706	0	ENST00000378444.4:c.2668G>T	p.Glu890Ter	p.E890*	ENST00000378444	NM_001123385.1	890	Gag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040789	47040789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	71	724	1	ENST00000329236.7:c.1190C>A	p.Pro397His	p.P397H	ENST00000329236	NM_001204466.1	397	cCc/cAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044595	47044595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	365	803	0	ENST00000329236.7:c.1858G>A	p.Glu620Lys	p.E620K	ENST00000329236	NM_001204466.1	620	Gag/Aag																																																																														
ARAF	369	MSKCC	GRCh37	X	47429332	47429332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	373	723	0	ENST00000377045.4:c.1460G>A	p.Ser487Asn	p.S487N	ENST00000377045	NM_001654.4	487	aGc/aAc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224470	53224470	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	196	635	0	ENST00000375401.3:c.3243G>A	p.Trp1081Ter	p.W1081*	ENST00000375401	NM_004187.3	1081	tgG/tgA																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227993	53227993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	366	705	1	ENST00000375401.3:c.2321C>T	p.Ala774Val	p.A774V	ENST00000375401	NM_004187.3	774	gCc/gTc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247064	53247064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	282	597	0	ENST00000375401.3:c.436G>T	p.Gly146Cys	p.G146C	ENST00000375401	NM_004187.3	146	Ggc/Tgc																																																																														
AR	367	MSKCC	GRCh37	X	66766085	66766085	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	279	592	0	ENST00000374690.3:c.1097A>C	p.Asn366Thr	p.N366T	ENST00000374690	NM_000044.3	366	aAc/aCc																																																																														
AR	367	MSKCC	GRCh37	X	66766097	66766097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	341	572	0	ENST00000374690.3:c.1109C>T	p.Ala370Val	p.A370V	ENST00000374690	NM_000044.3	370	gCt/gTt																																																																														
AR	367	MSKCC	GRCh37	X	66766144	66766144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	217	412	0	ENST00000374690.3:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000374690	NM_000044.3	386	Cgc/Tgc																																																																														
AR	367	MSKCC	GRCh37	X	66766207	66766207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	154	265	0	ENST00000374690.3:c.1219C>T	p.Arg407Cys	p.R407C	ENST00000374690	NM_000044.3	407	Cgc/Tgc																																																																														
AR	367	MSKCC	GRCh37	X	66766468	66766468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	210	464	0	ENST00000374690.3:c.1480G>A	p.Glu494Lys	p.E494K	ENST00000374690	NM_000044.3	494	Gaa/Aaa																																																																														
AR	367	MSKCC	GRCh37	X	66937379	66937379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	300	592	0	ENST00000374690.3:c.2233C>A	p.Leu745Ile	p.L745I	ENST00000374690	NM_000044.3	745	Ctc/Atc																																																																														
MED12	9968	MSKCC	GRCh37	X	70344137	70344137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	56	641	0	ENST00000374080.3:c.1873G>A	p.Ala625Thr	p.A625T	ENST00000374080		625	Gcc/Acc																																																																														
MED12	9968	MSKCC	GRCh37	X	70345909	70345909	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	259	490	1	ENST00000374080.3:c.2446C>T	p.Arg816Ter	p.R816*	ENST00000374080		816	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70347853	70347853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	302	544	0	ENST00000374080.3:c.3092C>T	p.Ala1031Val	p.A1031V	ENST00000374080		1031	gCt/gTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70349186	70349186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	251	600	0	ENST00000374080.3:c.3598C>T	p.Arg1200Cys	p.R1200C	ENST00000374080		1200	Cgc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76845384	76845384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	84	334	1	ENST00000373344.5:c.6137C>A	p.Ser2046Tyr	p.S2046Y	ENST00000373344	NM_000489.3	2046	tCt/tAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76854949	76854949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	158	566	0	ENST00000373344.5:c.5887C>T	p.Arg1963Trp	p.R1963W	ENST00000373344	NM_000489.3	1963	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76874365	76874365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	131	493	0	ENST00000373344.5:c.5357A>G	p.Asn1786Ser	p.N1786S	ENST00000373344	NM_000489.3	1786	aAt/aGt																																																																														
ATRX	546	MSKCC	GRCh37	X	76891519	76891519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	145	494	0	ENST00000373344.5:c.4586C>A	p.Thr1529Asn	p.T1529N	ENST00000373344	NM_000489.3	1529	aCc/aAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76920205	76920205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	142	398	0	ENST00000373344.5:c.3872C>A	p.Ser1291Tyr	p.S1291Y	ENST00000373344	NM_000489.3	1291	tCt/tAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76920255	76920255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	89	304	0	ENST00000373344.5:c.3822G>T	p.Lys1274Asn	p.K1274N	ENST00000373344	NM_000489.3	1274	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76937587	76937587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	80	325	0	ENST00000373344.5:c.3161C>A	p.Ser1054Tyr	p.S1054Y	ENST00000373344	NM_000489.3	1054	tCt/tAt																																																																														
BTK	695	MSKCC	GRCh37	X	100609640	100609640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	38	430	0	ENST00000308731.7:c.1609G>A	p.Val537Ile	p.V537I	ENST00000308731	NM_000061.2	537	Gta/Ata																																																																														
BTK	695	MSKCC	GRCh37	X	100611061	100611061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	315	673	0	ENST00000308731.7:c.1545G>T	p.Lys515Asn	p.K515N	ENST00000308731	NM_000061.2	515	aaG/aaT																																																																														
BTK	695	MSKCC	GRCh37	X	100630236	100630236	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	200	399	1	ENST00000308731.7:c.37C>T	p.Arg13Ter	p.R13*	ENST00000308731	NM_000061.2	13	Cga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123164933	123164933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	118	319	0	ENST00000218089.9:c.246G>A	p.Met82Ile	p.M82I	ENST00000218089	NM_001042749.1	82	atG/atA																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191804	123191804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	128	332	0	ENST00000218089.9:c.1393G>T	p.Val465Phe	p.V465F	ENST00000218089	NM_001042749.1	465	Gtt/Ttt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123195182	123195182	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	91	380	0	ENST00000218089.9:c.1525G>T	p.Gly509Ter	p.G509*	ENST00000218089	NM_001042749.1	509	Gga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197899	123197899	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	79	293	0	ENST00000218089.9:c.2023G>A	p.Glu675Lys	p.E675K	ENST00000218089	NM_001042749.1	675	Gag/Aag																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205151	123205151	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	74	334	1	ENST00000218089.9:c.2511G>T	p.Gln837His	p.Q837H	ENST00000218089	NM_001042749.1	837	caG/caT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224425	123224425	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	135	417	0	ENST00000218089.9:c.3278C>T	p.Thr1093Ile	p.T1093I	ENST00000218089	NM_001042749.1	1093	aCt/aTt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161392	55161392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	188	427	0	ENST00000257290.5:c.3223G>A	p.Asp1075Asn	p.D1075N	ENST00000257290	NM_006206.4	1075	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0039132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	572	851	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52693345	52693372	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CCAAGATGGCGGCGGCCGACGGCGACGA	CCAAGATGGCGGCGGCCGACGGCGACGA	-			P-0039132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	392	479	0	ENST00000322088.6:c.-4_24del		p.*2*	ENST00000322088	NM_014225.5																																																																																
ATR	545	MSKCC	GRCh37	3	142212150	142212151	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CA	CA	AG			P-0039132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	50	343	1	ENST00000350721.4:c.5901_5902delinsCT	p.Asp1968Tyr	p.D1968Y	ENST00000350721	NM_001184.3	1967	ggTGat/ggCTat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002681-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	202	510	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002681-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	213	681	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002681-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	196	393	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532735	187532736	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002681-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			516	253	566	0	ENST00000441802.2:c.9657dup	p.Val3220SerfsTer3	p.V3220Sfs*3	ENST00000441802	NM_005245.3	3219	-/A																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002793-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			289	149	332	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703662	47703662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002793-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			552	189	341	0	ENST00000233146.2:c.2162G>T	p.Gly721Val	p.G721V	ENST00000233146	NM_000251.2	721	gGa/gTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638139	176638139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002793-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			626	215	382	0	ENST00000439151.2:c.2739G>A	p.Met913Ile	p.M913I	ENST00000439151	NM_022455.4	913	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578374	7578374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002793-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			388	26	327	1	ENST00000269305.4:c.556G>A	p.Asp186Asn	p.D186N	ENST00000269305	NM_001126112.2	186	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	34	76	0				ENST00000310581	NM_198253.2																																																																																
DDR2	4921	MSKCC	GRCh37	1	162749986	162749986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	153	335	0	ENST00000367921.3:c.2518C>T	p.Pro840Ser	p.P840S	ENST00000367921	NM_006182.2	840	Ccc/Tcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517930	187517930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	142	320	0	ENST00000441802.2:c.12764C>T	p.Ser4255Phe	p.S4255F	ENST00000441802	NM_005245.3	4255	tCc/tTc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	773	336	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608053	28608053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	126	425	0	ENST00000241453.7:c.1913C>T	p.Ser638Leu	p.S638L	ENST00000241453	NM_004119.2	638	tCa/tTa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843593	156843593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	109	385	0	ENST00000524377.1:c.1019C>T	p.Thr340Ile	p.T340I	ENST00000524377	NM_002529.3	340	aCc/aTc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662151	227662151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	108	282	0	ENST00000305123.5:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000305123	NM_005544.2	435	cCc/cTc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795096	242795096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	87	268	0	ENST00000334409.5:c.113C>T	p.Ser38Phe	p.S38F	ENST00000334409	NM_005018.2	38	tCc/tTc																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72890312	72890312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	162	368	0	ENST00000325599.8:c.370G>A	p.Glu124Lys	p.E124K	ENST00000325599	NM_018130.2	124	Gag/Aag																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119624643	119624643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	153	428	0	ENST00000316626.5:c.772C>T	p.Pro258Ser	p.P258S	ENST00000316626		258	Cca/Tca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628000	187628000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	161	425	0	ENST00000441802.2:c.2982G>C	p.Lys994Asn	p.K994N	ENST00000441802	NM_005245.3	994	aaG/aaC																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876305	35876305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	99	264	0	ENST00000303115.3:c.1097C>T	p.Ser366Phe	p.S366F	ENST00000303115	NM_002185.3	366	tCc/tTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505094	149505094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	102	354	0	ENST00000261799.4:c.1721C>T	p.Ser574Phe	p.S574F	ENST00000261799	NM_002609.3	574	tCt/tTt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958208	2958208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	37	257	0	ENST00000396946.4:c.2524C>T	p.Leu842Phe	p.L842F	ENST00000396946	NM_032415.4	842	Ctc/Ttc																																																																														
HGF	3082	MSKCC	GRCh37	7	81381516	81381516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	265	475	0	ENST00000222390.5:c.545G>A	p.Gly182Glu	p.G182E	ENST00000222390	NM_000601.4	182	gGg/gAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	290	351	0	ENST00000288602.6:c.1406G>A	p.Gly469Glu	p.G469E	ENST00000288602	NM_004333.4	469	gGa/gAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231226	98231226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	34	236	0	ENST00000331920.6:c.2057C>T	p.Ser686Phe	p.S686F	ENST00000331920	NM_000264.3	686	tCt/tTt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114901048	114901048	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	167	518	0	ENST00000543371.1:c.658T>A	p.Leu220Ile	p.L220I	ENST00000543371	NM_001198531.1	220	Tta/Ata																																																																														
PGR	5241	MSKCC	GRCh37	11	100999068	100999068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	122	436	1	ENST00000325455.5:c.734G>A	p.Gly245Asp	p.G245D	ENST00000325455	NM_001202474.3	245	gGt/gAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344314	118344314	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	64	159	0	ENST00000534358.1:c.2440C>T	p.Gln814Ter	p.Q814*	ENST00000534358	NM_005933.3	814	Cag/Tag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563269	21563269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	200	322	0	ENST00000382592.4:c.650C>T	p.Pro217Leu	p.P217L	ENST00000382592	NM_014572.2	217	cCc/cTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680724	88680724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	111	308	0	ENST00000360948.2:c.533G>A	p.Gly178Glu	p.G178E	ENST00000360948	NM_001012338.2	178	gGg/gAg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226054	2226054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	93	297	0	ENST00000326181.6:c.1751G>T	p.Trp584Leu	p.W584L	ENST00000326181	NM_032271.2	584	tGg/tTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29592302	29592302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	347	325	0	ENST00000358273.4:c.4780T>C	p.Tyr1594His	p.Y1594H	ENST00000358273	NM_001042492.2	1594	Tac/Cac																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39613898	39613898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	163	338	0	ENST00000262039.4:c.1816C>T	p.Pro606Ser	p.P606S	ENST00000262039	NM_002647.2	606	Ccg/Tcg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099273	4099274	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	86	328	0	ENST00000262948.5:c.844_845delinsTT	p.Pro282Phe	p.P282F	ENST00000262948	NM_030662.3	282	CCc/TTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272063	15272063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	25	76	0	ENST00000263388.2:c.6376C>T	p.Pro2126Ser	p.P2126S	ENST00000263388	NM_000435.2	2126	Ccc/Tcc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350015	15350015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	130	305	0	ENST00000263377.2:c.3637C>T	p.Pro1213Ser	p.P1213S	ENST00000263377	NM_058243.2	1213	Ccc/Tcc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793280	33793280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	67	127	0	ENST00000498907.2:c.41C>T	p.Pro14Leu	p.P14L	ENST00000498907	NM_004364.3	14	cCg/cTg																																																																														
AXL	558	MSKCC	GRCh37	19	41743903	41743903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	253	385	0	ENST00000301178.4:c.838G>A	p.Glu280Lys	p.E280K	ENST00000301178	NM_021913.4	280	Gag/Aag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525059	9525059	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	161	429	0	ENST00000353224.5:c.1826G>A	p.Trp609Ter	p.W609*	ENST00000353224	NM_177990.2	609	tGg/tAg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561102	9561102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	74	267	0	ENST00000353224.5:c.680C>T	p.Pro227Leu	p.P227L	ENST00000353224	NM_177990.2	227	cCt/cTt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929022	44929022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	203	510	0	ENST00000377967.4:c.2122G>A	p.Gly708Arg	p.G708R	ENST00000377967	NM_021140.2	708	Gga/Aga																																																																														
AR	367	MSKCC	GRCh37	X	66931406	66931406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	172	487	0	ENST00000374690.3:c.2048C>T	p.Pro683Leu	p.P683L	ENST00000374690	NM_000044.3	683	cCa/cTa																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480568	123480568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	112	268	0	ENST00000371139.4:c.76G>A	p.Asp26Asn	p.D26N	ENST00000371139	NM_001114937.2	26	Gat/Aat																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252782	10252783	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	80	206	0	ENST00000340748.4:c.3182_3183delinsTT	p.Thr1061Ile	p.T1061I	ENST00000340748		1061	aCC/aTT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0003071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	69	79	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0003071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	494	409	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463181	25463181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	280	358	1	ENST00000264709.3:c.2312G>A	p.Arg771Gln	p.R771Q	ENST00000264709	NM_175629.2	771	cGa/cAa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101911535	101911535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	376	408	0	ENST00000374994.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000374994	NM_004612.2	487	cGg/cAg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45873425	45873425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	214	288	0	ENST00000391945.4:c.71A>G	p.Tyr24Cys	p.Y24C	ENST00000391945	NM_000400.3	24	tAc/tGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44920586	44920586	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	407	270	0	ENST00000377967.4:c.1347G>A	p.Trp449Ter	p.W449*	ENST00000377967	NM_021140.2	449	tgG/tgA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1166	275	280	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	240	224	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874257	155874257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	67	256	0	ENST00000368323.3:c.274G>T	p.Ala92Ser	p.A92S	ENST00000368323	NM_006912.5	92	Gca/Tca																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423511	88423511	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	90	356	0	ENST00000360948.2:c.2324C>G	p.Ser775Ter	p.S775*	ENST00000360948	NM_001012338.2	775	tCa/tGa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534457	63534457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	63	134	0	ENST00000307078.5:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000307078	NM_004655.3	355	aCc/aTc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604699	48604699	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	178	275	0	ENST00000342988.3:c.1521A>C	p.Lys507Asn	p.K507N	ENST00000342988	NM_005359.5	507	aaA/aaC																																																																														
ESR1	2099	MSKCC	GRCh37	6	152420094	152420112	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	CGGTCTGAGAGCTCCCTGG	CGGTCTGAGAGCTCCCTGG	-			P-0003107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	127	162	0	ENST00000206249.3:c.1782_*12delGGTCTGAGAGCTCCCTGGC		p.*594fs*	ENST00000206249	NM_000125.3	594																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	75	291	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	148	544	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	43	196	0	ENST00000304494.5:c.260G>C	p.Arg87Pro	p.R87P	ENST00000304494	NM_000077.4	87	cGg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	43	196	0	ENST00000304494.5:c.260G>C	p.Arg87Pro	p.R87P	ENST00000304494	NM_000077.4	87	cGg/cCg																																																																														
JUN	3725	MSKCC	GRCh37	1	59247866	59247866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	62	629	0	ENST00000371222.2:c.877G>A	p.Glu293Lys	p.E293K	ENST00000371222	NM_002228.3	293	Gag/Aag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26022334	26022334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	60	609	0	ENST00000435504.4:c.323C>T	p.Ser108Phe	p.S108F	ENST00000435504		108	tCc/tTc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61729133	61729133	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	53	496	0	ENST00000401558.2:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000401558	NM_003400.3	136	Cag/Tag																																																																														
BARD1	580	MSKCC	GRCh37	2	215646062	215646062	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	47	490	0	ENST00000260947.4:c.536C>G	p.Ser179Ter	p.S179*	ENST00000260947	NM_000465.2	179	tCa/tGa																																																																														
OBSL1	23363	MSKCC	GRCh37	2	220432056	220432056	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	61	584	0	ENST00000404537.1:c.1776C>G	p.Ile592Met	p.I592M	ENST00000404537	NM_015311.2	592	atC/atG																																																																														
MLH1	4292	MSKCC	GRCh37	3	37092022	37092022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	92	542	1	ENST00000231790.2:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000231790	NM_000249.3	717	Gaa/Aaa																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504350	186504350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	40	317	0	ENST00000323963.5:c.687G>A	p.Met229Ile	p.M229I	ENST00000323963		229	atG/atA																																																																														
APC	324	MSKCC	GRCh37	5	112176008	112176008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	33	311	0	ENST00000257430.4:c.4717G>A	p.Glu1573Lys	p.E1573K	ENST00000257430	NM_000038.5	1573	Gaa/Aaa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910744	29910744	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	158	423	0	ENST00000376809.5:c.284C>G	p.Ser95Ter	p.S95*	ENST00000376809	NM_002116.7	95	tCa/tGa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505484	157505484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	33	319	0	ENST00000346085.5:c.3465G>C	p.Lys1155Asn	p.K1155N	ENST00000346085	NM_020732.3	1155	aaG/aaC																																																																														
HGF	3082	MSKCC	GRCh37	7	81334776	81334776	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	39	503	0	ENST00000222390.5:c.1940G>C	p.Arg647Pro	p.R647P	ENST00000222390	NM_000601.4	647	cGa/cCa																																																																														
SMO	6608	MSKCC	GRCh37	7	128852173	128852173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	66	491	0	ENST00000249373.3:c.2245C>G	p.Leu749Val	p.L749V	ENST00000249373	NM_005631.4	749	Ctg/Gtg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101909995	101909995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	74	327	0	ENST00000374994.4:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000374994	NM_004612.2	439	Gaa/Aaa																																																																														
ABL1	25	MSKCC	GRCh37	9	133760819	133760819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	38	460	0	ENST00000318560.5:c.3142G>A	p.Glu1048Lys	p.E1048K	ENST00000318560	NM_005157.4	1048	Gag/Aag																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845588	63845588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	40	289	0	ENST00000279873.7:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000279873	NM_032199.2	443	Cgc/Tgc																																																																														
TET1	80312	MSKCC	GRCh37	10	70333593	70333593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	118	411	0	ENST00000373644.4:c.1498G>A	p.Glu500Lys	p.E500K	ENST00000373644	NM_030625.2	500	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375770	118375770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	89	474	0	ENST00000534358.1:c.9163G>C	p.Asp3055His	p.D3055H	ENST00000534358	NM_005933.3	3055	Gat/Cat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650565	18650565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	40	342	0	ENST00000266497.5:c.2776C>G	p.Leu926Val	p.L926V	ENST00000266497		926	Ctt/Gtt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671683	67671683	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	30	325	0	ENST00000264010.4:c.2092G>T	p.Glu698Ter	p.E698*	ENST00000264010	NM_006565.3	698	Gag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68862145	68862145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	89	338	0	ENST00000261769.5:c.2233G>C	p.Glu745Gln	p.E745Q	ENST00000261769	NM_004360.3	745	Gag/Cag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437520	56437520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	66	287	0	ENST00000407977.2:c.942C>G	p.Phe314Leu	p.F314L	ENST00000407977		314	ttC/ttG																																																																														
POLD1	5424	MSKCC	GRCh37	19	50917133	50917133	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	75	495	0	ENST00000440232.2:c.2385G>C	p.Glu795Asp	p.E795D	ENST00000440232	NM_002691.3	795	gaG/gaC																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46270961	46270961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	54	583	0	ENST00000371998.3:c.3085C>G	p.Leu1029Val	p.L1029V	ENST00000371998		1029	Ctt/Gtt																																																																														
ARAF	369	MSKCC	GRCh37	X	47424413	47424413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	40	279	0	ENST00000377045.4:c.333C>G	p.Phe111Leu	p.F111L	ENST00000377045	NM_001654.4	111	ttC/ttG																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602580	10602581	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0003167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	59	297	0	ENST00000171111.5:c.997_998delinsTT	p.Gly333Phe	p.G333F	ENST00000171111	NM_203500.1	333	GGc/TTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	109	137	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	24	336	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0003178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	8	249	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	60	183	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0003178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	355	392	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	94	159	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	45	126	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	113	326	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
IRF4	3662	MSKCC	GRCh37	6	394992	394992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	91	170	0	ENST00000380956.4:c.388G>A	p.Glu130Lys	p.E130K	ENST00000380956	NM_001195286.1	130	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151960145	151960145	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	147	376	0	ENST00000262189.6:c.1255C>T	p.Gln419Ter	p.Q419*	ENST00000262189	NM_170606.2	419	Caa/Taa																																																																														
ABL1	25	MSKCC	GRCh37	9	133759870	133759870	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	152	289	0	ENST00000318560.5:c.2193G>A	p.Trp731Ter	p.W731*	ENST00000318560	NM_005157.4	731	tgG/tgA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426775	49426775	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	46	144	0	ENST00000301067.7:c.11713C>T	p.Gln3905Ter	p.Q3905*	ENST00000301067	NM_003482.3	3905	Cag/Tag																																																																														
BLM	641	MSKCC	GRCh37	15	91346814	91346814	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	72	363	0	ENST00000355112.3:c.3422A>G	p.Asn1141Ser	p.N1141S	ENST00000355112	NM_000057.2	1141	aAt/aGt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136336	2136336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	116	356	0	ENST00000219476.3:c.4805A>G	p.Glu1602Gly	p.E1602G	ENST00000219476	NM_000548.3	1602	gAg/gGg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2220714	2220714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	96	273	0	ENST00000326181.6:c.331G>A	p.Glu111Lys	p.E111K	ENST00000326181	NM_032271.2	111	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808962	3808962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	118	238	0	ENST00000262367.5:c.3262G>A	p.Glu1088Lys	p.E1088K	ENST00000262367	NM_004380.2	1088	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821349	72821349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	146	350	0	ENST00000268489.5:c.10826C>T	p.Ser3609Phe	p.S3609F	ENST00000268489	NM_006885.3	3609	tCc/tTc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47679263	47679263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	74	305	0	ENST00000347630.2:c.944A>G	p.Asp315Gly	p.D315G	ENST00000347630	NM_001007230.1	315	gAt/gGt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5260818	5260818	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	27	166	0	ENST00000357368.4:c.593G>C	p.Arg198Pro	p.R198P	ENST00000357368	NM_002850.3	198	cGa/cCa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121153	11121153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	75	352	0	ENST00000344626.4:c.2220G>C	p.Glu740Asp	p.E740D	ENST00000344626	NM_003072.3	740	gaG/gaC																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872214	45872214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	79	310	0	ENST00000391945.4:c.220T>C	p.Ser74Pro	p.S74P	ENST00000391945	NM_000400.3	74	Tca/Cca																																																																														
ATRX	546	MSKCC	GRCh37	X	76953120	76953120	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	117	477	0	ENST00000373344.5:c.193A>C	p.Thr65Pro	p.T65P	ENST00000373344	NM_000489.3	65	Act/Cct																																																																														
ALK	238	MSKCC	GRCh37	2	30143341	30143341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	56	266	0	ENST00000389048.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000389048	NM_004304.4	62	tCg/tTg																																																																														
CASP8	841	MSKCC	GRCh37	2	202139614	202139614	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0003206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	96	370	0	ENST00000358485.4:c.775G>T	p.Glu259Ter	p.E259*	ENST00000358485	NM_001080125.1	259	Gag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70342404	70342404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	78	343	0	ENST00000374080.3:c.1295G>T	p.Gly432Val	p.G432V	ENST00000374080		432	gGa/gTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123182867	123182867	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	103	434	1	ENST00000218089.9:c.832C>G	p.Gln278Glu	p.Q278E	ENST00000218089	NM_001042749.1	278	Caa/Gaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994137	21994178	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGCTGGCTC	CCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGCTGGCTC	-			P-0003206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	69	399	0	ENST00000361570.3:c.276_316+1delGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAGG		p.X92_splice	ENST00000361570	NM_058195.3	92																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21994137	21994178	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGCTGGCTC	CCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGCTGGCTC	-			P-0003206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	69	399	0	ENST00000361570.3:c.276_316+1delGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAGG		p.X92_splice	ENST00000361570	NM_058195.3	92																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575440	64575444	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGC	TCTGC	-			P-0003206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	88	337	0	ENST00000337652.1:c.588_592del	p.Glu196AspfsTer3	p.E196Dfs*3	ENST00000337652	NM_130803.2	196	gaGCAGAca/gaca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	16	193	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	79	146	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	203	490	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag																																																																														
ABL1	25	MSKCC	GRCh37	9	133760819	133760819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	89	464	1	ENST00000318560.5:c.3142G>A	p.Glu1048Lys	p.E1048K	ENST00000318560	NM_005157.4	1048	Gag/Aag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259686	11259686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	101	337	0	ENST00000361445.4:c.4019G>A	p.Ser1340Asn	p.S1340N	ENST00000361445	NM_004958.3	1340	aGc/aAc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797198	45797198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	164	440	0	ENST00000372115.3:c.1175C>T	p.Ser392Phe	p.S392F	ENST00000372115	NM_001048171.1	392	tCc/tTc																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551879	150551879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	75	224	0	ENST00000369026.2:c.128C>G	p.Ser43Trp	p.S43W	ENST00000369026	NM_021960.4	43	tCg/tGg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165671	47165671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	79	399	0	ENST00000409792.3:c.455C>T	p.Thr152Ile	p.T152I	ENST00000409792	NM_014159.6	152	aCa/aTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165752	47165752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	68	420	0	ENST00000409792.3:c.374C>G	p.Ser125Cys	p.S125C	ENST00000409792	NM_014159.6	125	tCt/tGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165816	47165816	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	91	503	0	ENST00000409792.3:c.310C>G	p.Pro104Ala	p.P104A	ENST00000409792	NM_014159.6	104	Cca/Gca																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390117	89390117	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	37	365	0	ENST00000336596.2:c.866A>T	p.Lys289Met	p.K289M	ENST00000336596	NM_005233.5	289	aAg/aTg																																																																														
ATR	545	MSKCC	GRCh37	3	142242864	142242864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	38	429	0	ENST00000350721.4:c.4123G>A	p.Glu1375Lys	p.E1375K	ENST00000350721	NM_001184.3	1375	Gaa/Aaa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752342	57752342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	38	453	0	ENST00000274289.3:c.1231C>G	p.Pro411Ala	p.P411A	ENST00000274289	NM_006622.3	411	Ccc/Gcc																																																																														
APC	324	MSKCC	GRCh37	5	112174760	112174760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	22	348	0	ENST00000257430.4:c.3469G>C	p.Glu1157Gln	p.E1157Q	ENST00000257430	NM_000038.5	1157	Gag/Cag																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149510123	149510123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	135	367	0	ENST00000261799.4:c.1346C>T	p.Ser449Phe	p.S449F	ENST00000261799	NM_002609.3	449	tCt/tTt																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402595	20402595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	120	232	0	ENST00000346618.3:c.132C>A	p.Phe44Leu	p.F44L	ENST00000346618	NM_001949.4	44	ttC/ttA																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680503	30680503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	98	384	0	ENST00000376406.3:c.1216G>A	p.Asp406Asn	p.D406N	ENST00000376406	NM_014641.2	406	Gac/Aac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117677957	117677957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	73	561	0	ENST00000368508.3:c.3976C>G	p.Gln1326Glu	p.Q1326E	ENST00000368508	NM_002944.2	1326	Caa/Gaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522156	157522156	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	69	309	0	ENST00000346085.5:c.4428G>C	p.Gln1476His	p.Q1476H	ENST00000346085	NM_020732.3	1476	caG/caC																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935537	13935537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	52	274	0	ENST00000405192.2:c.1319G>A	p.Gly440Glu	p.G440E	ENST00000405192	NM_001163147.1	440	gGg/gAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484379	8484379	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	36	345	0	ENST00000356435.5:c.3154-1G>C		p.X1052_splice	ENST00000356435		1052																																																																															
TSC1	7248	MSKCC	GRCh37	9	135796766	135796766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	110	408	0	ENST00000298552.3:c.721G>C	p.Glu241Gln	p.E241Q	ENST00000298552	NM_001162426.1	241	Gaa/Caa																																																																														
TET1	80312	MSKCC	GRCh37	10	70333543	70333543	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	51	520	0	ENST00000373644.4:c.1448C>G	p.Ser483Ter	p.S483*	ENST00000373644	NM_030625.2	483	tCa/tGa																																																																														
TET1	80312	MSKCC	GRCh37	10	70446395	70446395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	136	414	0	ENST00000373644.4:c.5335C>T	p.Pro1779Ser	p.P1779S	ENST00000373644	NM_030625.2	1779	Ccc/Tcc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274827	123274827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	60	302	0	ENST00000358487.5:c.1091G>C	p.Gly364Ala	p.G364A	ENST00000358487	NM_000141.4	364	gGa/gCa																																																																														
ATM	472	MSKCC	GRCh37	11	108164202	108164202	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	59	231	0	ENST00000278616.4:c.4774G>T	p.Glu1592Ter	p.E1592*	ENST00000278616	NM_000051.3	1592	Gag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244110	46244110	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	33	372	0	ENST00000334344.6:c.2204G>C	p.Gly735Ala	p.G735A	ENST00000334344	NM_152641.2	735	gGa/gCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433958	49433958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	158	206	0	ENST00000301067.7:c.7595C>T	p.Ser2532Phe	p.S2532F	ENST00000301067	NM_003482.3	2532	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433988	49433988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	147	221	0	ENST00000301067.7:c.7565C>T	p.Pro2522Leu	p.P2522L	ENST00000301067	NM_003482.3	2522	cCt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434181	49434181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	189	353	0	ENST00000301067.7:c.7372C>A	p.Gln2458Lys	p.Q2458K	ENST00000301067	NM_003482.3	2458	Cag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133236076	133236076	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	83	324	0	ENST00000320574.5:c.3080C>G	p.Ser1027Cys	p.S1027C	ENST00000320574	NM_006231.2	1027	tCt/tGt																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240307	41240307	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	72	358	0	ENST00000379561.5:c.43G>C	p.Glu15Gln	p.E15Q	ENST00000379561	NM_002015.3	15	Gag/Cag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347917	73347917	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs202067860		P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	81	319	0	ENST00000377767.4:c.1144C>G	p.Arg382Gly	p.R382G	ENST00000377767	NM_014953.3	382	Cga/Gga																																																																														
MGA	23269	MSKCC	GRCh37	15	42046634	42046634	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	37	386	0	ENST00000219905.7:c.7009-1G>A		p.X2337_splice	ENST00000219905	NM_001164273.1	2337																																																																															
MGA	23269	MSKCC	GRCh37	15	42052536	42052536	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	47	657	0	ENST00000219905.7:c.7207C>G	p.Leu2403Val	p.L2403V	ENST00000219905	NM_001164273.1	2403	Cta/Gta																																																																														
MGA	23269	MSKCC	GRCh37	15	42052653	42052653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	68	694	0	ENST00000219905.7:c.7324C>G	p.Leu2442Val	p.L2442V	ENST00000219905	NM_001164273.1	2442	Ctc/Gtc																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732318	74732318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	241	697	1	ENST00000359995.5:c.591G>C	p.Lys197Asn	p.K197N	ENST00000359995	NM_001195427.1	197	aaG/aaC																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732409	74732409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	243	727	0	ENST00000359995.5:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000359995	NM_001195427.1	167	cGa/cAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42794835	42794835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	100	321	0	ENST00000575354.2:c.1915G>C	p.Glu639Gln	p.E639Q	ENST00000575354	NM_015125.3	639	Gag/Cag																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513240	44513240	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	214	178	0	ENST00000291552.4:c.695G>C	p.Arg232Thr	p.R232T	ENST00000291552	NM_006758.2	232	aGa/aCa																																																																														
NF2	4771	MSKCC	GRCh37	22	30000043	30000043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	103	487	0	ENST00000338641.4:c.56C>G	p.Pro19Arg	p.P19R	ENST00000338641	NM_000268.3	19	cCc/cGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41573610	41573610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	200	483	1	ENST00000263253.7:c.5895G>T	p.Met1965Ile	p.M1965I	ENST00000263253	NM_001429.3	1965	atG/atT																																																																														
EP300	2033	MSKCC	GRCh37	22	41573708	41573708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	224	415	0	ENST00000263253.7:c.5993G>C	p.Gly1998Ala	p.G1998A	ENST00000263253	NM_001429.3	1998	gGa/gCa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942817	44942817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	114	331	0	ENST00000377967.4:c.3397C>T	p.Gln1133Ter	p.Q1133*	ENST00000377967	NM_021140.2	1133	Caa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	80	218	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	134	293	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	200	516	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	86	317	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	30143216	30143216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	169	255	0	ENST00000389048.3:c.310C>T	p.Pro104Ser	p.P104S	ENST00000389048	NM_004304.4	104	Ccg/Tcg																																																																														
OBSL1	23363	MSKCC	GRCh37	2	220432218	220432218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	41	126	1	ENST00000404537.1:c.1614G>A	p.Trp538Ter	p.W538*	ENST00000404537	NM_015311.2	538	tgG/tgA																																																																														
SDHA	6389	MSKCC	GRCh37	5	235375	235375	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	171	473	0	ENST00000264932.6:c.1181A>T	p.Asp394Val	p.D394V	ENST00000264932	NM_004168.2	394	gAc/gTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176639023	176639023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	126	287	0	ENST00000439151.2:c.3623C>G	p.Thr1208Ser	p.T1208S	ENST00000439151	NM_022455.4	1208	aCt/aGt																																																																														
MET	4233	MSKCC	GRCh37	7	116403286	116403286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	338	459	0	ENST00000397752.3:c.2547G>A	p.Met849Ile	p.M849I	ENST00000397752	NM_000245.2	849	atG/atA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152009018	152009018	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	193	336	0	ENST00000262189.6:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000262189	NM_170606.2	202	Cag/Tag																																																																														
NBN	4683	MSKCC	GRCh37	8	90960050	90960050	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	192	400	0	ENST00000265433.3:c.1914+2T>A		p.X638_splice	ENST00000265433	NM_002485.4	638																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139400200	139400200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	102	333	0	ENST00000277541.6:c.4148G>A	p.Cys1383Tyr	p.C1383Y	ENST00000277541	NM_017617.3	1383	tGc/tAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436088	49436088	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	29	140	0	ENST00000301067.7:c.5893G>T	p.Glu1965Ter	p.E1965*	ENST00000301067	NM_003482.3	1965	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438644	49438644	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	141	482	0	ENST00000301067.7:c.4846G>T	p.Gly1616Ter	p.G1616*	ENST00000301067	NM_003482.3	1616	Gga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032238	10032238	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	141	348	0	ENST00000330684.3:c.585T>A	p.Phe195Leu	p.F195L	ENST00000330684	NM_001134407.1	195	ttT/ttA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831635	72831635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	254	862	0	ENST00000268489.5:c.4946C>T	p.Ser1649Phe	p.S1649F	ENST00000268489	NM_006885.3	1649	tCc/tTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70345262	70345262	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	176	283	0	ENST00000374080.3:c.2288A>T	p.Gln763Leu	p.Q763L	ENST00000374080		763	cAg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974713	21974713	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	115	443	0	ENST00000304494.5:c.114delC	p.Asn39ThrfsTer14	p.N39Tfs*14	ENST00000304494	NM_000077.4	38	ccC/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974713	21974713	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	115	443	0	ENST00000304494.5:c.114delC	p.Asn39ThrfsTer14	p.N39Tfs*14	ENST00000304494	NM_000077.4	38	ccC/cc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	234	309	1	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0003438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	112	160	0				ENST00000310581	NM_198253.2																																																																																
FOXP1	27086	MSKCC	GRCh37	3	71102839	71102839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	236	329	0	ENST00000318789.4:c.368C>T	p.Pro123Leu	p.P123L	ENST00000318789	NM_032682.5	123	cCt/cTt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920378	114920378	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0003438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	371	642	0	ENST00000543371.1:c.1319A>T	p.Asp440Val	p.D440V	ENST00000543371	NM_001198531.1	440	gAt/gTt																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742921	17742921	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	151	336	0	ENST00000250003.3:c.829G>C	p.Glu277Gln	p.E277Q	ENST00000250003	NM_002478.4	277	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444494	49444494	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	210	296	0	ENST00000301067.7:c.2877C>G	p.Tyr959Ter	p.Y959*	ENST00000301067	NM_003482.3	959	taC/taG																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179197	123179197	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	360	249	0	ENST00000218089.9:c.646C>T	p.Arg216Ter	p.R216*	ENST00000218089	NM_001042749.1	216	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	128	71	0				ENST00000310581	NM_198253.2																																																																																
CUL3	8452	MSKCC	GRCh37	2	225367748	225367748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	298	277	0	ENST00000264414.4:c.1419G>A	p.Met473Ile	p.M473I	ENST00000264414	NM_003590.4	473	atG/atA																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851610	134851610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	303	215	0	ENST00000398015.3:c.1016T>C	p.Ile339Thr	p.I339T	ENST00000398015	NM_004441.4	339	aTt/aCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178942545	178942545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	195	217	0	ENST00000263967.3:c.2352G>C	p.Glu784Asp	p.E784D	ENST00000263967	NM_006218.2	784	gaG/gaC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434256	49434256	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	457	341	0	ENST00000301067.7:c.7297G>T	p.Glu2433Ter	p.E2433*	ENST00000301067	NM_003482.3	2433	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	67	153	0				ENST00000310581	NM_198253.2																																																																																
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	257	1177	1	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770594	40770594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	278	536	0	ENST00000373198.4:c.2788G>A	p.Glu930Lys	p.E930K	ENST00000373198	NM_133170.3	930	Gaa/Aaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838347	156838347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	164	573	0	ENST00000524377.1:c.625G>A	p.Asp209Asn	p.D209N	ENST00000524377	NM_002529.3	209	Gac/Aac																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740215	162740215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	209	778	0	ENST00000367921.3:c.1417C>T	p.Arg473Cys	p.R473C	ENST00000367921	NM_006182.2	473	Cgc/Tgc																																																																														
FH	2271	MSKCC	GRCh37	1	241661267	241661267	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	127	403	0	ENST00000366560.3:c.1394A>T	p.Tyr465Phe	p.Y465F	ENST00000366560	NM_000143.3	465	tAt/tTt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086157	16086157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	151	457	0	ENST00000281043.3:c.1333G>A	p.Glu445Lys	p.E445K	ENST00000281043	NM_005378.4	445	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	29606667	29606667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	219	708	2	ENST00000389048.3:c.1213G>A	p.Glu405Lys	p.E405K	ENST00000389048	NM_004304.4	405	Gaa/Aaa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182187	99182187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	208	677	2	ENST00000074304.5:c.2252C>T	p.Ser751Phe	p.S751F	ENST00000074304	NM_001134224.1	751	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812293	212812293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	168	541	1	ENST00000342788.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000342788	NM_005235.2	95	Cgt/Tgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164784	47164784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	138	450	0	ENST00000409792.3:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000409792	NM_014159.6	448	Cgg/Tgg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	118	531	0	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468516	89468516	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	142	553	0	ENST00000336596.2:c.2050C>T	p.Arg684Ter	p.R684*	ENST00000336596	NM_005233.5	684	Cga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55963855	55963855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	183	793	0	ENST00000263923.4:c.2588G>A	p.Arg863Lys	p.R863K	ENST00000263923	NM_002253.2	863	aGg/aAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542252	187542252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	227	652	0	ENST00000441802.2:c.5488C>T	p.His1830Tyr	p.H1830Y	ENST00000441802	NM_005245.3	1830	Cat/Tat																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459725	149459725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	362	591	0	ENST00000286301.3:c.482G>A	p.Gly161Asp	p.G161D	ENST00000286301	NM_005211.3	161	gGc/gAc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514528	149514528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	150	569	1	ENST00000261799.4:c.416T>G	p.Leu139Arg	p.L139R	ENST00000261799	NM_002609.3	139	cTc/cGc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043904	180043904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56082504		P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	201	877	5	ENST00000261937.6:c.3092G>A	p.Arg1031Gln	p.R1031Q	ENST00000261937	NM_182925.4	1031	cGa/cAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185834	32185834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	173	601	0	ENST00000375023.3:c.1562C>T	p.Pro521Leu	p.P521L	ENST00000375023	NM_004557.3	521	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715803	117715803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	185	774	0	ENST00000368508.3:c.955G>A	p.Asp319Asn	p.D319N	ENST00000368508	NM_002944.2	319	Gat/Aat																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729907	41729907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	240	1211	1	ENST00000242208.4:c.622G>A	p.Glu208Lys	p.E208K	ENST00000242208	NM_002192.2	208	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	377	335	0	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140494220	140494220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	189	769	0	ENST00000288602.6:c.1028C>T	p.Pro343Leu	p.P343L	ENST00000288602	NM_004333.4	343	cCa/cTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880090	151880090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	221	824	1	ENST00000262189.6:c.5234C>T	p.Ser1745Leu	p.S1745L	ENST00000262189	NM_170606.2	1745	tCa/tTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331594	8331594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	213	878	0	ENST00000356435.5:c.5522C>T	p.Ser1841Leu	p.S1841L	ENST00000356435		1841	tCa/tTa																																																																														
SUFU	51684	MSKCC	GRCh37	10	104309776	104309776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	186	707	0	ENST00000369902.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000369902	NM_016169.3	123	Cgt/Tgt																																																																														
HRAS	3265	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	199	634	0	ENST00000311189.7:c.37G>T	p.Gly13Cys	p.G13C	ENST00000311189		13	Ggt/Tgt																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94203756	94203756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	171	541	0	ENST00000323929.3:c.898C>T	p.Pro300Ser	p.P300S	ENST00000323929	NM_005591.3	300	Cct/Tct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118361991	118361991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	127	497	0	ENST00000534358.1:c.4777C>T	p.Arg1593Cys	p.R1593C	ENST00000534358	NM_005933.3	1593	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445683	49445683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	225	840	0	ENST00000301067.7:c.1783G>A	p.Glu595Lys	p.E595K	ENST00000301067	NM_003482.3	595	Gag/Aag																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813370	102813370	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	193	655	0	ENST00000307046.8:c.319A>G	p.Met107Val	p.M107V	ENST00000307046	NM_001111285.1	107	Atg/Gtg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112019	115112019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	100	368	0	ENST00000257566.3:c.1721C>T	p.Ser574Phe	p.S574F	ENST00000257566	NM_016569.3	574	tCc/tTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574048	95574048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	156	451	0	ENST00000343455.3:c.2701G>A	p.Glu901Lys	p.E901K	ENST00000343455	NM_177438.2	901	Gag/Aag																																																																														
AKT1	207	MSKCC	GRCh37	14	105239387	105239387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	231	648	1	ENST00000349310.3:c.1000G>A	p.Gly334Arg	p.G334R	ENST00000349310	NM_001014432.1	334	Ggg/Agg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456443	99456443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	169	605	2	ENST00000268035.6:c.1760C>T	p.Thr587Ile	p.T587I	ENST00000268035	NM_000875.3	587	aCc/aTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	173	563	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245239	41245239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	201	727	0	ENST00000357654.3:c.2309C>T	p.Ser770Leu	p.S770L	ENST00000357654	NM_007294.3	770	tCa/tTa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117822	70117822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	156	635	2	ENST00000245479.2:c.290G>A	p.Gly97Asp	p.G97D	ENST00000245479	NM_000346.3	97	gGc/gAc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525104	9525104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	214	794	0	ENST00000353224.5:c.1781C>T	p.Ser594Phe	p.S594F	ENST00000353224	NM_177990.2	594	tCc/tTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	152	512	0	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019234	31019234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	384	769	0	ENST00000375687.4:c.829C>T	p.Pro277Ser	p.P277S	ENST00000375687	NM_015338.5	277	Cca/Tca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790012	40790012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	299	503	0	ENST00000373198.4:c.2719G>A	p.Gly907Arg	p.G907R	ENST00000373198	NM_133170.3	907	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790087	40790087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	242	527	0	ENST00000373198.4:c.2644G>A	p.Asp882Asn	p.D882N	ENST00000373198	NM_133170.3	882	Gac/Aac																																																																														
MED12	9968	MSKCC	GRCh37	X	70344985	70344985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	200	388	0	ENST00000374080.3:c.2215C>T	p.Pro739Ser	p.P739S	ENST00000374080		739	Ccc/Tcc																																																																														
MGA	23269	MSKCC	GRCh37	15	41988782	41988782	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	235	1197	0	ENST00000219905.7:c.1575del	p.Glu525AspfsTer22	p.E525Dfs*22	ENST00000219905	NM_001164273.1	525	gAa/ga																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787673	135787676	+	frameshift_variant	Frame_Shift_Del	DEL	GCTA	GCTA	CTT			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	159	722	0	ENST00000298552.3:c.906_909delinsAAG	p.Asn302LysfsTer16	p.N302Kfs*16	ENST00000298552	NM_001162426.1	302	aaTAGC/aaAAG																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244399	5244400	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	143	433	0	ENST00000357368.4:c.1082_1083delinsTT	p.Ser361Phe	p.S361F	ENST00000357368	NM_002850.3	361	tCC/tTT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	69	174	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	65	123	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	80	183	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566488	41566488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	183	431	0	ENST00000263253.7:c.4365G>C	p.Gln1455His	p.Q1455H	ENST00000263253	NM_001429.3	1455	caG/caC																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551879	150551879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	88	168	0	ENST00000369026.2:c.128C>G	p.Ser43Trp	p.S43W	ENST00000369026	NM_021960.4	43	tCg/tGg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47690285	47690285	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	114	261	0	ENST00000233146.2:c.1502G>C	p.Arg501Thr	p.R501T	ENST00000233146	NM_000251.2	501	aGa/aCa																																																																														
ATR	545	MSKCC	GRCh37	3	142231293	142231293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	22	369	1	ENST00000350721.4:c.4661C>T	p.Ala1554Val	p.A1554V	ENST00000350721	NM_001184.3	1554	gCa/gTa																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384762	84384762	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	98	221	0	ENST00000321945.7:c.682-1G>C		p.X228_splice	ENST00000321945	NM_139076.2	228																																																																															
NSD1	64324	MSKCC	GRCh37	5	176638698	176638698	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	135	312	1	ENST00000439151.2:c.3298G>T	p.Glu1100Ter	p.E1100*	ENST00000439151	NM_022455.4	1100	Gaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710623	117710623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	121	331	0	ENST00000368508.3:c.1649C>T	p.Ser550Leu	p.S550L	ENST00000368508	NM_002944.2	550	tCa/tTa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2951866	2951866	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	159	356	0	ENST00000396946.4:c.3084G>C	p.Glu1028Asp	p.E1028D	ENST00000396946	NM_032415.4	1028	gaG/gaC																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520043	106520043	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	170	306	0	ENST00000359195.3:c.2471C>G	p.Ser824Ter	p.S824*	ENST00000359195	NM_002649.2	824	tCa/tGa																																																																														
PGR	5241	MSKCC	GRCh37	11	100999663	100999663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	200	541	0	ENST00000325455.5:c.139G>A	p.Glu47Lys	p.E47K	ENST00000325455	NM_001202474.3	47	Gaa/Aaa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233613	69233613	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	74	155	0	ENST00000462284.1:c.1478T>G	p.Leu493Arg	p.L493R	ENST00000462284	NM_002392.5	493	cTa/cGa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114255	115114255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	202	342	0	ENST00000257566.3:c.962C>T	p.Ser321Phe	p.S321F	ENST00000257566	NM_016569.3	321	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857524	9857524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	112	241	0	ENST00000330684.3:c.3877G>A	p.Asp1293Asn	p.D1293N	ENST00000330684	NM_001134407.1	1293	Gat/Aat																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632768	23632768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	136	370	0	ENST00000261584.4:c.3028G>A	p.Glu1010Lys	p.E1010K	ENST00000261584	NM_024675.3	1010	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45858941	45858941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	149	412	0	ENST00000391945.4:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000391945	NM_000400.3	509	Gag/Aag																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264403	46264403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	190	660	1	ENST00000371998.3:c.1450C>G	p.Pro484Ala	p.P484A	ENST00000371998		484	Cct/Gct																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044907	47044907	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			15	109	197	0	ENST00000329236.7:c.2003del	p.Gly668AlafsTer56	p.G668Afs*56	ENST00000329236	NM_001204466.1	667	Ggg/gg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929438	81929438	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	187	590	0	ENST00000359376.3:c.1100del	p.Lys367SerfsTer35	p.K367Sfs*35	ENST00000359376	NM_002661.3	367	Aag/ag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638591	176638592	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	124	308	0	ENST00000439151.2:c.3191_3192del	p.Leu1064ArgfsTer22	p.L1064Rfs*22	ENST00000439151	NM_022455.4	1064	cTT/c																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781834	3781834	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	172	453	0	ENST00000262367.5:c.4833del	p.Asn1612ThrfsTer23	p.N1612Tfs*23	ENST00000262367	NM_004380.2	1611	ccC/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432320	49432320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	144	373	0	ENST00000301067.7:c.8819del	p.Pro2940LeufsTer3	p.P2940Lfs*3	ENST00000301067	NM_003482.3	2940	cCt/ct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0003596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	33	83	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	111	409	0	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	86	197	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0003596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	60	404	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787846	135787846	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0003596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	98	201	0	ENST00000298552.3:c.738-2A>G		p.X246_splice	ENST00000298552	NM_001162426.1	246																																																																															
BRCA2	675	MSKCC	GRCh37	13	32905128	32905128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	31	206	0	ENST00000380152.3:c.754G>C	p.Asp252His	p.D252H	ENST00000380152		252	Gac/Cac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910876	32910876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	92	496	0	ENST00000380152.3:c.2384C>T	p.Ser795Leu	p.S795L	ENST00000380152		795	tCa/tTa																																																																														
AKT1	207	MSKCC	GRCh37	14	105236697	105236697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	95	334	0	ENST00000349310.3:c.1424C>T	p.Ser475Leu	p.S475L	ENST00000349310	NM_001014432.1	475	tCg/tTg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	338239	338239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	108	391	0	ENST00000262320.3:c.2472C>A	p.Phe824Leu	p.F824L	ENST00000262320	NM_003502.3	824	ttC/ttA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916248	9916248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	26	253	0	ENST00000330684.3:c.2041C>G	p.Arg681Gly	p.R681G	ENST00000330684	NM_001134407.1	681	Cga/Gga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44913136	44913136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	99	214	0	ENST00000377967.4:c.811C>T	p.Gln271Ter	p.Q271*	ENST00000377967	NM_021140.2	271	Cag/Tag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225400316	225400319	+	frameshift_variant	Frame_Shift_Del	DEL	GAAG	GAAG	AAA			P-0003596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	93	311	1	ENST00000264414.4:c.304_307delinsTTT	p.Leu102PhefsTer4	p.L102Ffs*4	ENST00000264414	NM_003590.4	102	CTTCaa/TTTaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578417	7578419	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	TG			P-0003596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	63	221	0	ENST00000269305.4:c.511_513delinsCA	p.Glu171GlnfsTer3	p.E171Qfs*3	ENST00000269305	NM_001126112.2	171	GAG/CA																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	181	392	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	45	286	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	20	110	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	100	405	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539564	187539564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	70	284	0	ENST00000441802.2:c.8176C>T	p.Arg2726Ter	p.R2726*	ENST00000441802	NM_005245.3	2726	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	43	196	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	43	196	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413214	139413214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	60	350	0	ENST00000277541.6:c.928G>A	p.Gly310Arg	p.G310R	ENST00000277541	NM_017617.3	310	Ggg/Agg																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797480	45797480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	29	326	0	ENST00000372115.3:c.997G>A	p.Glu333Lys	p.E333K	ENST00000372115	NM_001048171.1	333	Gag/Aag																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29115390	29115390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	112	425	0	ENST00000328354.6:c.676C>T	p.Leu226Phe	p.L226F	ENST00000328354	NM_007194.3	226	Ctt/Ttt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111048	193111048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	84	257	0	ENST00000367435.3:c.581G>A	p.Arg194Lys	p.R194K	ENST00000367435	NM_024529.4	194	aGa/aAa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172115	99172115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	35	285	0	ENST00000074304.5:c.1681G>A	p.Asp561Asn	p.D561N	ENST00000074304	NM_001134224.1	561	Gat/Aat																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027146	71027146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	78	215	0	ENST00000318789.4:c.1181C>T	p.Ser394Phe	p.S394F	ENST00000318789	NM_032682.5	394	tCc/tTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149436923	149436923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	85	298	0	ENST00000286301.3:c.2246C>T	p.Pro749Leu	p.P749L	ENST00000286301	NM_005211.3	749	cCc/cTc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38283733	38283733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	97	348	0	ENST00000425967.3:c.745G>A	p.Asp249Asn	p.D249N	ENST00000425967	NM_001174067.1	249	Gac/Aac																																																																														
SYK	6850	MSKCC	GRCh37	9	93624597	93624597	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	95	344	0	ENST00000375746.1:c.688G>T	p.Glu230Ter	p.E230*	ENST00000375746	NM_001174167.1	230	Gag/Tag																																																																														
PAK1	5058	MSKCC	GRCh37	11	77066830	77066830	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs150302040		P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	78	353	0	ENST00000356341.3:c.655A>G	p.Thr219Ala	p.T219A	ENST00000356341	NM_002576.4	219	Aca/Gca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244572	46244572	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	102	309	0	ENST00000334344.6:c.2666C>A	p.Ser889Ter	p.S889*	ENST00000334344	NM_152641.2	889	tCa/tAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245027	46245027	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	89	449	0	ENST00000334344.6:c.3121C>T	p.Gln1041Ter	p.Q1041*	ENST00000334344	NM_152641.2	1041	Caa/Taa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3827656	3827656	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	67	295	0	ENST00000262367.5:c.2116G>A	p.Gly706Arg	p.G706R	ENST00000262367	NM_004380.2	706	Gga/Aga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681015	37681015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	93	349	0	ENST00000447079.4:c.3184C>T	p.Pro1062Ser	p.P1062S	ENST00000447079	NM_015083.1	1062	Cca/Tca																																																																														
INSR	3643	MSKCC	GRCh37	19	7174624	7174624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	76	420	0	ENST00000302850.5:c.1093G>A	p.Gly365Arg	p.G365R	ENST00000302850	NM_000208.2	365	Ggg/Agg																																																																														
AXL	558	MSKCC	GRCh37	19	41745208	41745208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	97	355	0	ENST00000301178.4:c.1274C>A	p.Ala425Asp	p.A425D	ENST00000301178	NM_021913.4	425	gCc/gAc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027098	71027099	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	58	192	0	ENST00000318789.4:c.1228_1229delinsTT	p.Pro410Leu	p.P410L	ENST00000318789	NM_032682.5	410	CCa/TTa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177558	56177559	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	93	422	0	ENST00000399503.3:c.2531_2532delinsTT	p.Ser844Phe	p.S844F	ENST00000399503	NM_005921.1	844	tCC/tTT																																																																														
SDHB	6390	MSKCC	GRCh37	1	17380491	17380492	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	117	407	0	ENST00000375499.3:c.23_24delinsTT	p.Ser8Phe	p.S8F	ENST00000375499	NM_003000.2	8	tCC/tTT																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	147	509	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0003700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	42	129	0				ENST00000310581	NM_198253.2																																																																																
MDM2	4193	MSKCC	GRCh37	12	69230462	69230462	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	45	360	0	ENST00000462284.1:c.851T>A	p.Val284Asp	p.V284D	ENST00000462284	NM_002392.5	284	gTt/gAt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774162	66774162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	175	586	0	ENST00000307102.5:c.638G>T	p.Gly213Val	p.G213V	ENST00000307102	NM_002755.3	213	gGg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	26	159	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	181	329	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	50	252	0	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	91	306	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	192	374	0	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741917	145741917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	64	361	0	ENST00000428558.2:c.586A>G	p.Ser196Gly	p.S196G	ENST00000428558	NM_004260.3	196	Agt/Ggt																																																																														
KIT	3815	MSKCC	GRCh37	4	55599333	55599333	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	68	370	1	ENST00000288135.5:c.2459A>T	p.Asp820Val	p.D820V	ENST00000288135	NM_000222.2	820	gAt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088663	27088663	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	73	430	0	ENST00000324856.7:c.2272C>T	p.Gln758Ter	p.Q758*	ENST00000324856	NM_006015.4	758	Cag/Tag																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363439	40363439	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	59	405	0	ENST00000397332.2:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000397332	NM_001033082.2	264	Caa/Taa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076719	72076719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	88	529	0	ENST00000357731.5:c.778G>A	p.Gly260Arg	p.G260R	ENST00000357731	NM_173808.2	260	Gga/Aga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120465277	120465277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	81	357	0	ENST00000256646.2:c.4984C>T	p.Pro1662Ser	p.P1662S	ENST00000256646	NM_024408.3	1662	Cct/Tct																																																																														
PMS1	5378	MSKCC	GRCh37	2	190718991	190718991	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	80	322	0	ENST00000441310.2:c.993T>G	p.Asn331Lys	p.N331K	ENST00000441310	NM_000534.4	331	aaT/aaG																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164342	47164342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	102	337	0	ENST00000409792.3:c.1784C>T	p.Ser595Leu	p.S595L	ENST00000409792	NM_014159.6	595	tCa/tTa																																																																														
BCL6	604	MSKCC	GRCh37	3	187447324	187447324	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	33	237	1	ENST00000232014.4:c.869A>T	p.Asn290Ile	p.N290I	ENST00000232014	NM_001130845.1	290	aAt/aTt																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84388668	84388668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	87	447	0	ENST00000321945.7:c.620G>A	p.Gly207Glu	p.G207E	ENST00000321945	NM_139076.2	207	gGa/gAa																																																																														
SDHA	6389	MSKCC	GRCh37	5	256524	256524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	53	254	0	ENST00000264932.6:c.1984C>T	p.Arg662Cys	p.R662C	ENST00000264932	NM_004168.2	662	Cgc/Tgc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871202	35871202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200772681		P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	75	376	0	ENST00000303115.3:c.424G>A	p.Gly142Arg	p.G142R	ENST00000303115	NM_002185.3	142	Gga/Aga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873639	35873639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	77	447	0	ENST00000303115.3:c.595G>A	p.Ala199Thr	p.A199T	ENST00000303115	NM_002185.3	199	Gca/Aca																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721445	176721445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	70	406	0	ENST00000439151.2:c.7076C>T	p.Pro2359Leu	p.P2359L	ENST00000439151	NM_022455.4	2359	cCa/cTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117665238	117665238	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	62	339	0	ENST00000368508.3:c.4509G>C	p.Leu1503Phe	p.L1503F	ENST00000368508	NM_002944.2	1503	ttG/ttC																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528906	157528906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	54	294	0	ENST00000346085.5:c.6631A>G	p.Asn2211Asp	p.N2211D	ENST00000346085	NM_020732.3	2211	Aac/Gac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983953	2983953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	94	654	0	ENST00000396946.4:c.577G>A	p.Glu193Lys	p.E193K	ENST00000396946	NM_032415.4	193	Gag/Aag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729679	41729679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	88	642	0	ENST00000242208.4:c.850G>A	p.Glu284Lys	p.E284K	ENST00000242208	NM_002192.2	284	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444453	50444453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	21	149	0	ENST00000331340.3:c.383G>A	p.Gly128Glu	p.G128E	ENST00000331340	NM_006060.4	128	gGg/gAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450324	50450324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	66	354	0	ENST00000331340.3:c.508G>A	p.Glu170Lys	p.E170K	ENST00000331340	NM_006060.4	170	Gag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508127	106508127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	34	220	0	ENST00000359195.3:c.121G>A	p.Glu41Lys	p.E41K	ENST00000359195	NM_002649.2	41	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878611	151878611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	51	251	0	ENST00000262189.6:c.6334C>T	p.Pro2112Ser	p.P2112S	ENST00000262189	NM_170606.2	2112	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331660	8331660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	79	493	0	ENST00000356435.5:c.5456G>A	p.Gly1819Glu	p.G1819E	ENST00000356435		1819	gGa/gAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484287	8484287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	80	500	0	ENST00000356435.5:c.3245C>T	p.Ser1082Leu	p.S1082L	ENST00000356435		1082	tCa/tTa																																																																														
SYK	6850	MSKCC	GRCh37	9	93624601	93624601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	58	373	0	ENST00000375746.1:c.692G>A	p.Gly231Glu	p.G231E	ENST00000375746	NM_001174167.1	231	gGa/gAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211547	98211547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	45	300	0	ENST00000331920.6:c.3608G>A	p.Ser1203Asn	p.S1203N	ENST00000331920	NM_000264.3	1203	aGc/aAc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760960	133760960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	89	599	0	ENST00000318560.5:c.3283C>T	p.Arg1095Trp	p.R1095W	ENST00000318560	NM_005157.4	1095	Cgg/Tgg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779831	135779831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	59	398	0	ENST00000298552.3:c.2008C>T	p.Pro670Ser	p.P670S	ENST00000298552	NM_001162426.1	670	Ccc/Tcc																																																																														
WT1	7490	MSKCC	GRCh37	11	32421568	32421568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	50	296	0	ENST00000332351.3:c.1024G>A	p.Asp342Asn	p.D342N	ENST00000332351	NM_024426.4	342	Gat/Aat																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001438	29001438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	39	225	0	ENST00000282397.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000282397	NM_002019.4	432	Gaa/Aaa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457396	67457396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	107	376	0	ENST00000327367.4:c.370C>T	p.Pro124Ser	p.P124S	ENST00000327367	NM_005902.3	124	Ccc/Tcc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678395	88678395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	56	525	0	ENST00000360948.2:c.1141A>G	p.Lys381Glu	p.K381E	ENST00000360948	NM_001012338.2	381	Aaa/Gaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857857	9857857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	67	448	0	ENST00000330684.3:c.3544G>A	p.Asp1182Asn	p.D1182N	ENST00000330684	NM_001134407.1	1182	Gac/Aac																																																																														
NF1	4763	MSKCC	GRCh37	17	29508750	29508750	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	95	449	0	ENST00000358273.4:c.677A>C	p.Asn226Thr	p.N226T	ENST00000358273	NM_001042492.2	226	aAt/aCt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763520	59763520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	53	285	0	ENST00000259008.2:c.2582C>T	p.Ser861Phe	p.S861F	ENST00000259008	NM_032043.2	861	tCt/tTt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78858939	78858939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	23	346	0	ENST00000306801.3:c.1974G>A	p.Met658Ile	p.M658I	ENST00000306801	NM_020761.2	658	atG/atA																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78882679	78882679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	70	416	0	ENST00000306801.3:c.2470C>T	p.Pro824Ser	p.P824S	ENST00000306801	NM_020761.2	824	Cca/Tca																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210657	2210657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	51	401	0	ENST00000398665.3:c.1154C>T	p.Thr385Ile	p.T385I	ENST00000398665	NM_032482.2	385	aCc/aTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247890	10247890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	40	373	0	ENST00000340748.4:c.4312G>A	p.Asp1438Asn	p.D1438N	ENST00000340748		1438	Gat/Aat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291770	15291770	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	50	299	0	ENST00000263388.2:c.2994+2T>G		p.X998_splice	ENST00000263388	NM_000435.2	998																																																																															
POLD1	5424	MSKCC	GRCh37	19	50920302	50920302	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	82	532	0	ENST00000440232.2:c.3068G>A	p.Gly1023Glu	p.G1023E	ENST00000440232	NM_002691.3	1023	gGa/gAa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46252729	46252729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	121	617	0	ENST00000371998.3:c.158C>T	p.Ser53Phe	p.S53F	ENST00000371998		53	tCt/tTt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413139	63413139	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	55	170	0	ENST00000330258.3:c.28C>T	p.Gln10Ter	p.Q10*	ENST00000330258	NM_152424.3	10	Cag/Tag																																																																														
TP63	8626	MSKCC	GRCh37	3	189612205	189612206	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	76	420	0	ENST00000264731.3:c.1957_1958delinsTT	p.Pro653Leu	p.P653L	ENST00000264731	NM_003722.4	653	CCa/TTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306712	41306713	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	46	356	0	ENST00000373198.4:c.946_947delinsAA	p.Gly316Lys	p.G316K	ENST00000373198	NM_133170.3	316	GGg/AAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0003744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	287	283	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741879	145741879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	79	238	0	ENST00000428558.2:c.624C>G	p.Cys208Trp	p.C208W	ENST00000428558	NM_004260.3	208	tgC/tgG																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865132	57865132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	158	410	0	ENST00000228682.2:c.2609C>A	p.Pro870His	p.P870H	ENST00000228682	NM_005269.2	870	cCt/cAt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78617598	78617598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	69	162	0	ENST00000306801.3:c.336C>G	p.Asn112Lys	p.N112K	ENST00000306801	NM_020761.2	112	aaC/aaG																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252781	10252781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	61	144	0	ENST00000340748.4:c.3184G>A	p.Val1062Met	p.V1062M	ENST00000340748		1062	Gtg/Atg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030556	47030722	+	intron_variant	Intron	DEL	CAAGGGGAGGAGGAGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCATGGCCCCGGGCAGGAGGCCAGGCTGGGTCTCCTCCAGGGCCCTCAACTTCT	CAAGGGGAGGAGGAGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCATGGCCCCGGGCAGGAGGCCAGGCTGGGTCTCCTCCAGGGCCCTCAACTTCT	-			P-0003744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	70	254	0	ENST00000329236.7:c.202-1804_201+1660delAAGGGGAGGAGGAGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCATGGCCCCGGGCAGGAGGCCAGGCTGGGTCTCCTCCAGGGCCCTCAACTTCTC		p.*68*	ENST00000329236	NM_001204466.1																																																																																
LATS1	9113	MSKCC	GRCh37	6	150004922	150004922	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	63	531	0	ENST00000253339.5:c.1303C>T	p.Gln435Ter	p.Q435*	ENST00000253339		435	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0003857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	18	192	0				ENST00000310581	NM_198253.2																																																																																
VTCN1	79679	MSKCC	GRCh37	1	117695728	117695728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	87	449	0	ENST00000369458.3:c.709G>A	p.Asp237Asn	p.D237N	ENST00000369458	NM_024626.3	237	Gat/Aat																																																																														
MITF	4286	MSKCC	GRCh37	3	69987151	69987151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	27	435	0	ENST00000352241.4:c.533C>T	p.Pro178Leu	p.P178L	ENST00000352241	NM_198159.2	178	cCc/cTc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180049775	180049775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	37	698	0	ENST00000261937.6:c.1613A>G	p.Asn538Ser	p.N538S	ENST00000261937	NM_182925.4	538	aAc/aGc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704568	117704568	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	84	593	0	ENST00000368508.3:c.2408G>A	p.Trp803Ter	p.W803*	ENST00000368508	NM_002944.2	803	tGg/tAg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864556	57864556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	110	836	0	ENST00000228682.2:c.2033C>T	p.Pro678Leu	p.P678L	ENST00000228682	NM_005269.2	678	cCt/cTt																																																																														
RB1	5925	MSKCC	GRCh37	13	48934208	48934208	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	61	483	0	ENST00000267163.4:c.663T>A	p.Cys221Ter	p.C221*	ENST00000267163	NM_000321.2	221	tgT/tgA																																																																														
MAX	4149	MSKCC	GRCh37	14	65543205	65543205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	33	483	0	ENST00000358664.4:c.472G>C	p.Glu158Gln	p.E158Q	ENST00000358664	NM_002382.4	158	Gag/Cag																																																																														
NF1	4763	MSKCC	GRCh37	17	29586089	29586089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	84	540	0	ENST00000358273.4:c.4372G>C	p.Glu1458Gln	p.E1458Q	ENST00000358273	NM_001042492.2	1458	Gaa/Caa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023634	31023634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	61	579	0	ENST00000375687.4:c.3119C>T	p.Ser1040Phe	p.S1040F	ENST00000375687	NM_015338.5	1040	tCt/tTt																																																																														
NF2	4771	MSKCC	GRCh37	22	30038207	30038207	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0003857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	181	685	0	ENST00000338641.4:c.380T>G	p.Leu127Ter	p.L127*	ENST00000338641	NM_000268.3	127	tTa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577548	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	59	433	0	ENST00000269305.4:c.733_734delGGinsAA	p.Gly245Asn	p.G245N	ENST00000269305	NM_001126112.2	245	GGc/AAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	68	82	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	62	150	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	284	330	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100436	8100436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	315	459	0	ENST00000346208.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000346208		137	tCg/tTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879604	37879604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	255	285	0	ENST00000269571.5:c.1979G>A	p.Gly660Asp	p.G660D	ENST00000269571		660	gGc/gAc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179197	123179197	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	160	221	0	ENST00000218089.9:c.646C>T	p.Arg216Ter	p.R216*	ENST00000218089	NM_001042749.1	216	Cga/Tga																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	145	350	0	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																														
IDH1	3417	MSKCC	GRCh37	2	209108293	209108293	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	162	406	0	ENST00000345146.2:c.556G>C	p.Asp186His	p.D186H	ENST00000345146	NM_005896.2	186	Gat/Cat																																																																														
BARD1	580	MSKCC	GRCh37	2	215645771	215645771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	113	373	0	ENST00000260947.4:c.827C>T	p.Thr276Ile	p.T276I	ENST00000260947	NM_000465.2	276	aCt/aTt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562111	176562111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	154	292	0	ENST00000439151.2:c.7C>G	p.Gln3Glu	p.Q3E	ENST00000439151	NM_022455.4	3	Cag/Gag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245965	46245965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	152	341	0	ENST00000334344.6:c.4059G>C	p.Leu1353Phe	p.L1353F	ENST00000334344	NM_152641.2	1353	ttG/ttC																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350561	89350561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	166	672	0	ENST00000301030.4:c.2389G>C	p.Glu797Gln	p.E797Q	ENST00000301030	NM_001256183.1	797	Gaa/Caa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657523	37657523	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	111	350	0	ENST00000447079.4:c.2440G>C	p.Glu814Gln	p.E814Q	ENST00000447079	NM_015083.1	814	Gag/Cag																																																																														
YES1	7525	MSKCC	GRCh37	18	747930	747930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	140	383	0	ENST00000314574.4:c.460C>G	p.Gln154Glu	p.Q154E	ENST00000314574	NM_005433.3	154	Cag/Gag																																																																														
SRC	6714	MSKCC	GRCh37	20	36012660	36012660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	86	88	0	ENST00000358208.4:c.104C>T	p.Ser35Leu	p.S35L	ENST00000358208		35	tCg/tTg																																																																														
SRC	6714	MSKCC	GRCh37	20	36012765	36012765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	156	134	0	ENST00000358208.4:c.209C>T	p.Ser70Leu	p.S70L	ENST00000358208		70	tCg/tTg																																																																														
SRC	6714	MSKCC	GRCh37	20	36012780	36012780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	145	127	0	ENST00000358208.4:c.224C>T	p.Ser75Phe	p.S75F	ENST00000358208		75	tCc/tTc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29120997	29120997	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	160	417	1	ENST00000328354.6:c.560C>G	p.Ser187Cys	p.S187C	ENST00000328354	NM_007194.3	187	tCt/tGt																																																																														
ALK	238	MSKCC	GRCh37	2	29451914	29451914	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	117	308	0	ENST00000389048.3:c.2651A>T	p.Asn884Ile	p.N884I	ENST00000389048	NM_004304.4	884	aAt/aTt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703632	47703632	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138465383		P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	149	373	0	ENST00000233146.2:c.2132G>A	p.Arg711Gln	p.R711Q	ENST00000233146	NM_000251.2	711	cGa/cAa																																																																														
CASP8	841	MSKCC	GRCh37	2	202136309	202136309	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	63	343	0	ENST00000358485.4:c.553G>T	p.Glu185Ter	p.E185*	ENST00000358485	NM_001080125.1	185	Gag/Tag																																																																														
CASP8	841	MSKCC	GRCh37	2	202149778	202149778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	149	400	1	ENST00000358485.4:c.1219C>T	p.Leu407Phe	p.L407F	ENST00000358485	NM_001080125.1	407	Ctt/Ttt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295705	212295705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	122	446	2	ENST00000342788.4:c.2608G>A	p.Gly870Arg	p.G870R	ENST00000342788	NM_005235.2	870	Gga/Aga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212652831	212652831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	142	419	0	ENST00000342788.4:c.475G>T	p.Asp159Tyr	p.D159Y	ENST00000342788	NM_005235.2	159	Gac/Tac																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067486	37067486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	46	206	0	ENST00000231790.2:c.1397C>T	p.Ser466Phe	p.S466F	ENST00000231790	NM_000249.3	466	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919218	178919218	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	72	338	0	ENST00000263967.3:c.703T>A	p.Ser235Thr	p.S235T	ENST00000263967	NM_006218.2	235	Tcc/Acc																																																																														
BCL6	604	MSKCC	GRCh37	3	187447214	187447214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	51	189	0	ENST00000232014.4:c.979G>A	p.Gly327Ser	p.G327S	ENST00000232014	NM_001130845.1	327	Ggt/Agt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806582	1806582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	58	316	0	ENST00000260795.2:c.1298C>T	p.Ser433Phe	p.S433F	ENST00000260795		433	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518321	187518321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	13	71	0	ENST00000441802.2:c.12373C>T	p.Gln4125Ter	p.Q4125*	ENST00000441802	NM_005245.3	4125	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1264640	1264640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	293	409	0	ENST00000310581.5:c.2722C>T	p.Pro908Ser	p.P908S	ENST00000310581	NM_198253.2	908	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295243	1295243	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs35550267		P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	83	126	0				ENST00000310581	NM_198253.2																																																																																
MDC1	9656	MSKCC	GRCh37	6	30675792	30675793	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	110	625	0	ENST00000376406.3:c.2563_2564delinsAA	p.Gly855Lys	p.G855K	ENST00000376406	NM_014641.2	855	GGg/AAg																																																																														
PIM1	5292	MSKCC	GRCh37	6	37138564	37138565	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	104	229	0	ENST00000373509.5:c.98_99delinsTT	p.Pro33Leu	p.P33L	ENST00000373509	NM_002648.3	33	cCC/cTT																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790782	89790782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	54	380	0	ENST00000336032.3:c.169C>T	p.Leu57Phe	p.L57F	ENST00000336032	NM_006813.2	57	Ctc/Ttc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004628	150004628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	77	388	0	ENST00000253339.5:c.1597C>T	p.Pro533Ser	p.P533S	ENST00000253339		533	Cct/Tct																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729393	41729393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	107	601	0	ENST00000242208.4:c.1136G>C	p.Arg379Pro	p.R379P	ENST00000242208	NM_002192.2	379	cGg/cCg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55087058	55087059	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TA			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	16	137	0	ENST00000275493.2:c.88_88+1delinsTA		p.X30_splice	ENST00000275493	NM_005228.3	30																																																																															
EGFR	1956	MSKCC	GRCh37	7	55266482	55266482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	169	439	0	ENST00000275493.2:c.2774C>T	p.Ser925Phe	p.S925F	ENST00000275493	NM_005228.3	925	tCc/tTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81358969	81358969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	89	383	1	ENST00000222390.5:c.992C>T	p.Ser331Phe	p.S331F	ENST00000222390	NM_000601.4	331	tCt/tTt																																																																														
SMO	6608	MSKCC	GRCh37	7	128850333	128850333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	50	333	0	ENST00000249373.3:c.1596G>A	p.Met532Ile	p.M532I	ENST00000249373	NM_005631.4	532	atG/atA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879231	151879231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	60	419	0	ENST00000262189.6:c.5714C>T	p.Pro1905Leu	p.P1905L	ENST00000262189	NM_170606.2	1905	cCt/cTt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285584	38285584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	63	270	0	ENST00000425967.3:c.569A>G	p.Glu190Gly	p.E190G	ENST00000425967	NM_001174067.1	190	gAa/gGa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319899	8319899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	254	384	0	ENST00000356435.5:c.5602G>A	p.Gly1868Arg	p.G1868R	ENST00000356435		1868	Gga/Aga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8339020	8339020	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	199	330	0	ENST00000356435.5:c.5281G>C	p.Glu1761Gln	p.E1761Q	ENST00000356435		1761	Gaa/Caa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	62	118	0	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	62	118	0	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971187	21971187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	61	116	0	ENST00000361570.3:c.337C>T	p.Pro113Ser	p.P113S	ENST00000361570	NM_058195.3	113	Ccg/Tcg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317335	87317336	+	splice_donor_variant	Splice_Site	DNP	GT	GT	AA			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	91	304	0	ENST00000277120.3:c.359+1_359+2delinsAA		p.X120_splice	ENST00000277120		120																																																																															
PTCH1	5727	MSKCC	GRCh37	9	98209399	98209399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	74	258	0	ENST00000331920.6:c.4139C>T	p.Ala1380Val	p.A1380V	ENST00000331920	NM_000264.3	1380	gCc/gTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412673	139412673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	128	338	0	ENST00000277541.6:c.1171C>T	p.Pro391Ser	p.P391S	ENST00000277541	NM_017617.3	391	Cct/Tct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417316	139417316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	72	162	0	ENST00000277541.6:c.728G>A	p.Cys243Tyr	p.C243Y	ENST00000277541	NM_017617.3	243	tGt/tAt																																																																														
RET	5979	MSKCC	GRCh37	10	43596152	43596152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	95	279	0	ENST00000355710.3:c.319G>A	p.Glu107Lys	p.E107K	ENST00000355710	NM_020975.4	107	Gag/Aag																																																																														
RET	5979	MSKCC	GRCh37	10	43610162	43610162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	86	460	0	ENST00000355710.3:c.2114C>T	p.Ser705Phe	p.S705F	ENST00000355710	NM_020975.4	705	tCc/tTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239535	123239535	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	210	648	2	ENST00000358487.5:c.2302G>T	p.Glu768Ter	p.E768*	ENST00000358487	NM_000141.4	768	Gaa/Taa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137301	64137301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	84	255	0	ENST00000334205.4:c.1733C>T	p.Pro578Leu	p.P578L	ENST00000334205	NM_003942.2	578	cCc/cTc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137802	64137802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	63	410	0	ENST00000334205.4:c.1903C>T	p.Leu635Phe	p.L635F	ENST00000334205	NM_003942.2	635	Ctt/Ttt																																																																														
YAP1	10413	MSKCC	GRCh37	11	102094420	102094420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	93	405	0	ENST00000282441.5:c.1100C>T	p.Ser367Phe	p.S367F	ENST00000282441	NM_001130145.2	367	tCt/tTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342400	118342400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	83	420	0	ENST00000534358.1:c.526C>T	p.Arg176Cys	p.R176C	ENST00000534358	NM_005933.3	176	Cgt/Tgt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800900	18800900	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	54	407	0	ENST00000266497.5:c.4276C>T	p.Arg1426Ter	p.R1426*	ENST00000266497		1426	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230641	46230642	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	78	458	0	ENST00000334344.6:c.890_891delinsTT	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCC/tTT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244361	46244361	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	86	394	0	ENST00000334344.6:c.2455C>T	p.Gln819Ter	p.Q819*	ENST00000334344	NM_152641.2	819	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436527	49436527	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	51	389	0	ENST00000301067.7:c.5779C>T	p.Gln1927Ter	p.Q1927*	ENST00000301067	NM_003482.3	1927	Caa/Taa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434462	121434462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	75	357	0	ENST00000257555.6:c.1226C>T	p.Pro409Leu	p.P409L	ENST00000257555		409	cCt/cTt																																																																														
MGA	23269	MSKCC	GRCh37	15	41988856	41988856	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	120	682	0	ENST00000219905.7:c.1648C>T	p.Gln550Ter	p.Q550*	ENST00000219905	NM_001164273.1	550	Cag/Tag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576148	88576148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	44	312	0	ENST00000360948.2:c.1525C>T	p.Pro509Ser	p.P509S	ENST00000360948	NM_001012338.2	509	Cct/Tct																																																																														
AXIN1	8312	MSKCC	GRCh37	16	339519	339519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	68	390	0	ENST00000262320.3:c.2383C>T	p.Pro795Ser	p.P795S	ENST00000262320	NM_003502.3	795	Ccc/Tcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778488	3778488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	55	386	2	ENST00000262367.5:c.6560C>T	p.Pro2187Leu	p.P2187L	ENST00000262367	NM_004380.2	2187	cCa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857500	9857500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	53	252	0	ENST00000330684.3:c.3901G>A	p.Glu1301Lys	p.E1301K	ENST00000330684	NM_001134407.1	1301	Gag/Aag																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128002	30128002	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	68	449	2	ENST00000263025.4:c.1127T>G	p.Leu376Arg	p.L376R	ENST00000263025	NM_002746.2	376	cTg/cGg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351247	89351247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	108	555	1	ENST00000301030.4:c.1703C>T	p.Ser568Phe	p.S568F	ENST00000301030	NM_001256183.1	568	tCc/tTc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836659	89836659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	50	299	0	ENST00000389301.3:c.2231C>T	p.Pro744Leu	p.P744L	ENST00000389301	NM_000135.2	744	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	147	440	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
NF1	4763	MSKCC	GRCh37	17	29563033	29563033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	69	394	0	ENST00000358273.4:c.3968C>T	p.Pro1323Leu	p.P1323L	ENST00000358273	NM_001042492.2	1323	cCt/cTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866371	37866371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	48	258	0	ENST00000269571.5:c.676C>T	p.Arg226Cys	p.R226C	ENST00000269571		226	Cgc/Tgc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37882013	37882013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	115	358	0	ENST00000269571.5:c.2779C>T	p.Pro927Ser	p.P927S	ENST00000269571		927	Cca/Tca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883734	37883734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	54	380	0	ENST00000269571.5:c.3346C>T	p.Pro1116Ser	p.P1116S	ENST00000269571		1116	Ccc/Tcc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375553	40375553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	195	561	0	ENST00000293328.3:c.397C>T	p.Leu133Phe	p.L133F	ENST00000293328	NM_012448.3	133	Ctt/Ttt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696441	47696441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	139	376	0	ENST00000347630.2:c.382G>A	p.Gly128Ser	p.G128S	ENST00000347630	NM_001007230.1	128	Ggc/Agc																																																																														
YES1	7525	MSKCC	GRCh37	18	748017	748017	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	62	429	0	ENST00000314574.4:c.373G>A	p.Glu125Lys	p.E125K	ENST00000314574	NM_005433.3	125	Gaa/Aaa																																																																														
CIC	23152	MSKCC	GRCh37	19	42791367	42791367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	43	256	0	ENST00000575354.2:c.427G>A	p.Glu143Lys	p.E143K	ENST00000575354	NM_015125.3	143	Gag/Aag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906847	50906848	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	74	437	0	ENST00000440232.2:c.1235_1236delinsTT	p.Thr412Ile	p.T412I	ENST00000440232	NM_002691.3	412	aCC/aTT																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546650	9546650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	320	371	0	ENST00000353224.5:c.1372G>A	p.Gly458Ser	p.G458S	ENST00000353224	NM_177990.2	458	Ggc/Agc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24143262	24143262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	81	467	0	ENST00000263121.7:c.494C>T	p.Pro165Leu	p.P165L	ENST00000263121	NM_003073.3	165	cCc/cTc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130412	29130412	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	117	298	0	ENST00000328354.6:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000328354	NM_007194.3	100	Cag/Tag																																																																														
EP300	2033	MSKCC	GRCh37	22	41564759	41564759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	82	415	0	ENST00000263253.7:c.4060C>T	p.Pro1354Ser	p.P1354S	ENST00000263253	NM_001429.3	1354	Cca/Tca																																																																														
EP300	2033	MSKCC	GRCh37	22	41565507	41565507	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	154	360	2	ENST00000263253.7:c.4173G>C	p.Arg1391Ser	p.R1391S	ENST00000263253	NM_001429.3	1391	agG/agC																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039817	47039817	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	132	266	0	ENST00000329236.7:c.927-1G>A		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	737	175	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	22	79	0				ENST00000310581	NM_198253.2																																																																																
EPHA3	2042	MSKCC	GRCh37	3	89462393	89462393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	213	155	0	ENST00000336596.2:c.1865C>T	p.Ser622Phe	p.S622F	ENST00000336596	NM_005233.5	622	tCc/tTc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047693	180047693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	55	224	0	ENST00000261937.6:c.2322G>A	p.Met774Ile	p.M774I	ENST00000261937	NM_182925.4	774	atG/atA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778585	3778585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	117	198	0	ENST00000262367.5:c.6463C>T	p.Pro2155Ser	p.P2155S	ENST00000262367	NM_004380.2	2155	Cct/Tct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830886	72830886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	259	452	0	ENST00000268489.5:c.5695G>A	p.Gly1899Arg	p.G1899R	ENST00000268489	NM_006885.3	1899	Gga/Aga																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943680	17943680	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	90	210	0	ENST00000458235.1:c.2409G>A	p.Trp803Ter	p.W803*	ENST00000458235	NM_000215.3	803	tgG/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	237	170	0				ENST00000310581	NM_198253.2																																																																																
CSF1R	1436	MSKCC	GRCh37	5	149459779	149459779	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	196	335	0	ENST00000286301.3:c.428T>A	p.Val143Glu	p.V143E	ENST00000286301	NM_005211.3	143	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0004091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	273	505	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29653210	29653210	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	167	278	0	ENST00000358273.4:c.5209del	p.Leu1737Ter	p.L1737*	ENST00000358273	NM_001042492.2	1736	gaC/ga																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78414967	78414967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	210	256	1	ENST00000370768.2:c.1799C>T	p.Pro600Leu	p.P600L	ENST00000370768	NM_003902.3	600	cCg/cTg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	320	382	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459133	120459133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	241	371	0	ENST00000256646.2:c.6212C>T	p.Pro2071Leu	p.P2071L	ENST00000256646	NM_024408.3	2071	cCt/cTt																																																																														
REL	5966	MSKCC	GRCh37	2	61128167	61128168	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	121	195	0	ENST00000295025.8:c.343_344delinsAA	p.Val115Lys	p.V115K	ENST00000295025	NM_002908.2	115	GTa/AAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	323	414	0	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468489	89468490	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	217	393	1	ENST00000336596.2:c.2023_2024delinsAA	p.Gly675Lys	p.G675K	ENST00000336596	NM_005233.5	675	GGa/AAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630303	187630303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	267	385	0	ENST00000441802.2:c.679C>T	p.Arg227Cys	p.R227C	ENST00000441802	NM_005245.3	227	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	91	152	0				ENST00000310581	NM_198253.2																																																																																
ROS1	6098	MSKCC	GRCh37	6	117715371	117715371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	234	421	0	ENST00000368508.3:c.1118C>T	p.Ser373Phe	p.S373F	ENST00000368508	NM_002944.2	373	tCc/tTc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	341	432	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467683	50467683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	239	381	0	ENST00000331340.3:c.918G>A	p.Met306Ile	p.M306I	ENST00000331340	NM_006060.4	306	atG/atA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513006	106513006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	230	296	1	ENST00000359195.3:c.2020G>A	p.Asp674Asn	p.D674N	ENST00000359195	NM_002649.2	674	Gat/Aat																																																																														
MET	4233	MSKCC	GRCh37	7	116419003	116419003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	176	215	0	ENST00000397752.3:c.3514G>A	p.Glu1172Lys	p.E1172K	ENST00000397752	NM_000245.2	1172	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633380	8633380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	358	561	0	ENST00000356435.5:c.289G>A	p.Glu97Lys	p.E97K	ENST00000356435		97	Gaa/Aaa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625269	69625269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	403	628	0	ENST00000334134.2:c.524C>T	p.Ser175Phe	p.S175F	ENST00000334134	NM_005247.2	175	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244787	46244787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	432	608	0	ENST00000334344.6:c.2881C>T	p.Gln961Ter	p.Q961*	ENST00000334344	NM_152641.2	961	Cag/Tag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426701	121426701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	390	575	1	ENST00000257555.6:c.392G>A	p.Arg131Gln	p.R131Q	ENST00000257555		131	cGg/cAg																																																																														
INSR	3643	MSKCC	GRCh37	19	7128942	7128942	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	223	342	0	ENST00000302850.5:c.2866A>C	p.Lys956Gln	p.K956Q	ENST00000302850	NM_000208.2	956	Aaa/Caa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546785	9546785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	149	222	0	ENST00000353224.5:c.1237C>G	p.Pro413Ala	p.P413A	ENST00000353224	NM_177990.2	413	Ccg/Gcg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100942	41100942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	244	350	0	ENST00000373198.4:c.1414G>A	p.Glu472Lys	p.E472K	ENST00000373198	NM_133170.3	472	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420076	41420076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	174	256	0	ENST00000373198.4:c.245G>C	p.Arg82Thr	p.R82T	ENST00000373198	NM_133170.3	82	aGa/aCa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934406	39934406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	197	271	0	ENST00000378444.4:c.193G>A	p.Asp65Asn	p.D65N	ENST00000378444	NM_001123385.1	65	Gat/Aat																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239889	53239889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	420	661	0	ENST00000375401.3:c.1552C>T	p.His518Tyr	p.H518Y	ENST00000375401	NM_004187.3	518	Cac/Tac																																																																														
MED12	9968	MSKCC	GRCh37	X	70341598	70341598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	429	659	0	ENST00000374080.3:c.1033C>T	p.Pro345Ser	p.P345S	ENST00000374080		345	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	46	204	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	33	775	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	90	927	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859782	151859782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	62	536	0	ENST00000262189.6:c.10880C>T	p.Ser3627Leu	p.S3627L	ENST00000262189	NM_170606.2	3627	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576886	7576886	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	78	711	0	ENST00000269305.4:c.960G>C	p.Lys320Asn	p.K320N	ENST00000269305	NM_001126112.2	320	aaG/aaC																																																																														
EP300	2033	MSKCC	GRCh37	22	41566488	41566488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	102	915	0	ENST00000263253.7:c.4365G>T	p.Gln1455His	p.Q1455H	ENST00000263253	NM_001429.3	1455	caG/caT																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15840881	15840881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	84	753	0	ENST00000307771.7:c.965G>A	p.Arg322Lys	p.R322K	ENST00000307771	NM_005089.3	322	aGa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	110	111	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	334	476	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663184	227663184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	316	439	0	ENST00000305123.5:c.271G>A	p.Glu91Lys	p.E91K	ENST00000305123	NM_005544.2	91	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418492	49418492	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	228	289	0	ENST00000301067.7:c.15922-1G>A		p.X5308_splice	ENST00000301067	NM_003482.3	5308																																																																															
RUNX1	861	MSKCC	GRCh37	21	36252901	36252901	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	296	424	0	ENST00000300305.3:c.461A>C	p.Gln154Pro	p.Q154P	ENST00000300305		154	cAg/cCg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184969	123184969	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0004197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	166	338	0	ENST00000218089.9:c.1018-2A>C		p.X340_splice	ENST00000218089	NM_001042749.1	340																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0004203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	35	100	0				ENST00000310581	NM_198253.2																																																																																
MSH6	2956	MSKCC	GRCh37	2	48027345	48027345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	38	305	0	ENST00000234420.5:c.2223C>G	p.Asn741Lys	p.N741K	ENST00000234420	NM_000179.2	741	aaC/aaG																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404568	8404568	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	285	364	1	ENST00000356435.5:c.4179T>A	p.Asp1393Glu	p.D1393E	ENST00000356435		1393	gaT/gaA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390698	139390698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	33	268	0	ENST00000277541.6:c.7493C>T	p.Pro2498Leu	p.P2498L	ENST00000277541	NM_017617.3	2498	cCc/cTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692848	89692848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	82	68	0	ENST00000371953.3:c.332G>C	p.Trp111Ser	p.W111S	ENST00000371953	NM_000314.4	111	tGg/tCg																																																																														
CCND2	894	MSKCC	GRCh37	12	4385208	4385208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	189	285	0	ENST00000261254.3:c.233C>T	p.Pro78Leu	p.P78L	ENST00000261254	NM_001759.3	78	cCt/cTt																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145436	58145436	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	207	240	0	ENST00000257904.6:c.65A>T	p.Lys22Met	p.K22M	ENST00000257904	NM_000075.3	22	aAg/aTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222151	2222151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	51	354	0	ENST00000398665.3:c.2983C>T	p.Arg995Trp	p.R995W	ENST00000398665	NM_032482.2	995	Cgg/Tgg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047001	128047002	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0004203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	213	366	1	ENST00000285398.2:c.733_734delinsTT	p.Pro245Phe	p.P245F	ENST00000285398	NM_000122.1	245	CCc/TTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578450	+	protein_altering_variant	In_Frame_Del	DEL	TAGATGGCC	TAGATGGCC	CCG			P-0004203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	133	202	0	ENST00000269305.4:c.480_488delinsCGG	p.Met160_Tyr163delinsIleGly	p.M160_Y163delinsIG	ENST00000269305	NM_001126112.2	160	atGGCCATCTAc/atCGGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	62	108	0				ENST00000310581	NM_198253.2																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8499823	8499823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	228	355	3	ENST00000356435.5:c.2146C>T	p.Arg716Cys	p.R716C	ENST00000356435		716	Cgc/Tgc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	398	413	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	200	404	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129632	11129632	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	142	396	0	ENST00000344626.4:c.2439-1G>A		p.X813_splice	ENST00000344626	NM_003072.3	813																																																																															
MTOR	2475	MSKCC	GRCh37	1	11187093	11187093	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	85	390	0	ENST00000361445.4:c.6325C>T	p.Arg2109Ter	p.R2109*	ENST00000361445	NM_004958.3	2109	Cga/Tga																																																																														
PARP1	142	MSKCC	GRCh37	1	226567683	226567683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	104	394	0	ENST00000366794.5:c.1483C>T	p.Pro495Ser	p.P495S	ENST00000366794	NM_001618.3	495	Cca/Tca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41280711	41280711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	266	340	0	ENST00000349496.5:c.2224C>T	p.His742Tyr	p.H742Y	ENST00000349496	NM_001904.3	742	Cac/Tac																																																																														
MST1	4485	MSKCC	GRCh37	3	49723500	49723500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			14	17	29	0	ENST00000449682.2:c.1142C>T	p.Pro381Leu	p.P381L	ENST00000449682	NM_020998.3	381	cCc/cTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678757	52678757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	219	434	0	ENST00000394830.3:c.862G>A	p.Glu288Lys	p.E288K	ENST00000394830	NM_018313.4	288	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55955969	55955969	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs56302315		P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	122	348	1	ENST00000263923.4:c.3193G>A	p.Ala1065Thr	p.A1065T	ENST00000263923	NM_002253.2	1065	Gct/Act																																																																														
KDR	3791	MSKCC	GRCh37	4	55970851	55970851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	162	426	0	ENST00000263923.4:c.1946C>T	p.Thr649Ile	p.T649I	ENST00000263923	NM_002253.2	649	aCc/aTc																																																																														
APC	324	MSKCC	GRCh37	5	112177851	112177851	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146695342		P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	220	337	1	ENST00000257430.4:c.6560G>A	p.Gly2187Glu	p.G2187E	ENST00000257430	NM_000038.5	2187	gGa/gAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982036	93982036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	220	440	0	ENST00000369303.4:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000369303	NM_004440.3	477	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631251	117631251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	174	468	0	ENST00000368508.3:c.6427G>A	p.Asp2143Asn	p.D2143N	ENST00000368508	NM_002944.2	2143	Gat/Aat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710558	117710558	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	167	275	1	ENST00000368508.3:c.1714C>T	p.Gln572Ter	p.Q572*	ENST00000368508	NM_002944.2	572	Cag/Tag																																																																														
SYK	6850	MSKCC	GRCh37	9	93627347	93627347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	162	381	0	ENST00000375746.1:c.814G>A	p.Gly272Ser	p.G272S	ENST00000375746	NM_001174167.1	272	Ggc/Agc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209379	98209379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	163	315	0	ENST00000331920.6:c.4159C>T	p.Pro1387Ser	p.P1387S	ENST00000331920	NM_000264.3	1387	Cct/Tct																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229629	98229629	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	165	316	0	ENST00000331920.6:c.2329C>A	p.Leu777Ile	p.L777I	ENST00000331920	NM_000264.3	777	Ctt/Att																																																																														
KLF4	9314	MSKCC	GRCh37	9	110251295	110251295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	134	311	2	ENST00000374672.4:c.42C>A	p.Asp14Glu	p.D14E	ENST00000374672	NM_004235.4	14	gaC/gaA																																																																														
ARID2	196528	MSKCC	GRCh37	12	46242662	46242662	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	158	287	0	ENST00000334344.6:c.1624C>T	p.Arg542Ter	p.R542*	ENST00000334344	NM_152641.2	542	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244853	46244853	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	262	574	0	ENST00000334344.6:c.2947C>T	p.Gln983Ter	p.Q983*	ENST00000334344	NM_152641.2	983	Caa/Taa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28913374	28913374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	175	538	0	ENST00000282397.4:c.2419G>A	p.Asp807Asn	p.D807N	ENST00000282397	NM_002019.4	807	Gat/Aat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918761	32918761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	174	512	0	ENST00000380152.3:c.6908C>T	p.Ser2303Phe	p.S2303F	ENST00000380152		2303	tCc/tTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576115	88576115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	175	342	0	ENST00000360948.2:c.1558G>A	p.Gly520Arg	p.G520R	ENST00000360948	NM_001012338.2	520	Gga/Aga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678446	88678446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	185	499	0	ENST00000360948.2:c.1090C>T	p.Leu364Phe	p.L364F	ENST00000360948	NM_001012338.2	364	Ctc/Ttc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679211	88679211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	184	485	0	ENST00000360948.2:c.826G>A	p.Glu276Lys	p.E276K	ENST00000360948	NM_001012338.2	276	Gag/Aag																																																																														
BLM	641	MSKCC	GRCh37	15	91312725	91312725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	226	428	0	ENST00000355112.3:c.2464C>T	p.Pro822Ser	p.P822S	ENST00000355112	NM_000057.2	822	Cct/Tct																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858276	9858276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	155	320	0	ENST00000330684.3:c.3125G>A	p.Arg1042Lys	p.R1042K	ENST00000330684	NM_001134407.1	1042	aGg/aAg																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56787259	56787259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28363311		P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	189	437	0	ENST00000337432.4:c.745C>T	p.Arg249Cys	p.R249C	ENST00000337432	NM_058216.2	249	Cgt/Tgt																																																																														
YES1	7525	MSKCC	GRCh37	18	756577	756577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	170	305	0	ENST00000314574.4:c.251C>T	p.Ser84Leu	p.S84L	ENST00000314574	NM_005433.3	84	tCa/tTa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39644757	39644757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	226	401	0	ENST00000262039.4:c.2486C>T	p.Pro829Leu	p.P829L	ENST00000262039	NM_002647.2	829	cCa/cTa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368303	45368303	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs79888759		P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	172	386	0	ENST00000262160.6:c.1299T>A	p.Ser433Arg	p.S433R	ENST00000262160	NM_005901.5	433	agT/agA																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272260	15272260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	105	201	0	ENST00000263388.2:c.6179C>T	p.Ser2060Phe	p.S2060F	ENST00000263388	NM_000435.2	2060	tCc/tTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400077	41400077	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	178	319	0	ENST00000373198.4:c.682C>T	p.Gln228Ter	p.Q228*	ENST00000373198	NM_133170.3	228	Cag/Tag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201817	152201818	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0004214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	204	400	0	ENST00000206249.3:c.671_672delinsTT	p.Thr224Ile	p.T224I	ENST00000206249	NM_000125.3	224	aCC/aTT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	34	220	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	53	340	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
PARP1	142	MSKCC	GRCh37	1	226570767	226570767	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2230484		P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	45	224	0	ENST00000366794.5:c.1129C>T	p.Pro377Ser	p.P377S	ENST00000366794	NM_001618.3	377	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	53	498	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9781853	9781853	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	67	451	0	ENST00000377346.4:c.1990T>G	p.Phe664Val	p.F664V	ENST00000377346	NM_005026.3	664	Ttc/Gtc																																																																														
FH	2271	MSKCC	GRCh37	1	241661153	241661153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	75	452	0	ENST00000366560.3:c.1508C>T	p.Pro503Leu	p.P503L	ENST00000366560	NM_000143.3	503	cCt/cTt																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047803	128047803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	51	479	0	ENST00000285398.2:c.518A>G	p.Asn173Ser	p.N173S	ENST00000285398	NM_000122.1	173	aAc/aGc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158637104	158637104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	42	649	0	ENST00000263640.3:c.76C>G	p.Pro26Ala	p.P26A	ENST00000263640	NM_001105.4	26	Ccc/Gcc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098803	178098803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	76	547	0	ENST00000397062.3:c.242G>A	p.Gly81Asp	p.G81D	ENST00000397062	NM_006164.4	81	gGt/gAt																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119562161	119562161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	43	477	0	ENST00000316626.5:c.1175C>T	p.Pro392Leu	p.P392L	ENST00000316626		392	cCt/cTt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433491	138433491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	42	437	2	ENST00000289153.2:c.1121C>T	p.Ser374Leu	p.S374L	ENST00000289153	NM_006219.2	374	tCa/tTa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185161420	185161420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	24	391	0	ENST00000265026.3:c.847C>T	p.Pro283Ser	p.P283S	ENST00000265026	NM_004721.4	283	Cct/Tct																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356310	66356310	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	16	485	0	ENST00000273854.3:c.1187A>C	p.Lys396Thr	p.K396T	ENST00000273854	NM_004439.5	396	aAg/aCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509768	187509768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	27	219	0	ENST00000441802.2:c.13745C>T	p.Ser4582Phe	p.S4582F	ENST00000441802	NM_005245.3	4582	tCc/tTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517724	187517724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	22	210	0	ENST00000441802.2:c.12970C>T	p.Gln4324Ter	p.Q4324*	ENST00000441802	NM_005245.3	4324	Cag/Tag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38943017	38943017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	46	390	0	ENST00000357387.3:c.4970C>T	p.Ser1657Phe	p.S1657F	ENST00000357387	NM_152756.3	1657	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112178637	112178637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	45	472	0	ENST00000257430.4:c.7346G>A	p.Ser2449Asn	p.S2449N	ENST00000257430	NM_000038.5	2449	aGc/aAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418405	139418405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	16	203	1	ENST00000277541.6:c.167G>A	p.Arg56Gln	p.R56Q	ENST00000277541	NM_017617.3	56	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426000	49426000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	81	520	0	ENST00000301067.7:c.12488C>T	p.Pro4163Leu	p.P4163L	ENST00000301067	NM_003482.3	4163	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445179	49445179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	51	214	0	ENST00000301067.7:c.2287C>T	p.Pro763Ser	p.P763S	ENST00000301067	NM_003482.3	763	Ccg/Tcg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115111977	115111977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	38	198	0	ENST00000257566.3:c.1763C>T	p.Ala588Val	p.A588V	ENST00000257566	NM_016569.3	588	gCc/gTc																																																																														
YES1	7525	MSKCC	GRCh37	18	751726	751726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	33	426	0	ENST00000314574.4:c.350G>A	p.Arg117Lys	p.R117K	ENST00000314574	NM_005433.3	117	aGa/aAa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662151	227662152	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	58	460	1	ENST00000305123.5:c.1303_1304delinsTT	p.Pro435Phe	p.P435F	ENST00000305123	NM_005544.2	435	CCc/TTc																																																																														
ALK	238	MSKCC	GRCh37	2	29551335	29551336	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0004228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	26	396	0	ENST00000389048.3:c.1294_1295delinsAA	p.Gly432Asn	p.G432N	ENST00000389048	NM_004304.4	432	GGc/AAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0004253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	22	70	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0004253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	351	272	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9547022	9547022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	40	62	0	ENST00000353224.5:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000353224	NM_177990.2	334	Gat/Aat																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480568	123480568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	139	118	0	ENST00000371139.4:c.76G>A	p.Asp26Asn	p.D26N	ENST00000371139	NM_001114937.2	26	Gat/Aat																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026984	71026984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	106	140	0	ENST00000318789.4:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000318789	NM_032682.5	448	tCg/tTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631341	117631341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	144	352	0	ENST00000368508.3:c.6337G>A	p.Asp2113Asn	p.D2113N	ENST00000368508	NM_002944.2	2113	Gat/Aat																																																																														
CBL	867	MSKCC	GRCh37	11	119170367	119170367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	141	318	0	ENST00000264033.4:c.2597G>A	p.Ser866Asn	p.S866N	ENST00000264033	NM_005188.3	866	aGt/aAt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644811	67644811	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	105	202	0	ENST00000264010.4:c.76C>T	p.Gln26Ter	p.Q26*	ENST00000264010	NM_006565.3	26	Cag/Tag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17122350	17122350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	108	196	0	ENST00000285071.4:c.1045C>T	p.Leu349Phe	p.L349F	ENST00000285071	NM_144997.5	349	Ctc/Ttc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306632	41306632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	126	302	0	ENST00000373198.4:c.1027C>T	p.Pro343Ser	p.P343S	ENST00000373198	NM_133170.3	343	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	121	208	0				ENST00000310581	NM_198253.2																																																																																
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	289	718	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685314	89685315	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TG	TG	-			P-0004274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	152	378	0	ENST00000371953.3:c.209+1_209+2del		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
PTEN	5728	MSKCC	GRCh37	10	89624305	89624305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0004274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	223	365	0	ENST00000371953.3:c.79T>A	p.Tyr27Asn	p.Y27N	ENST00000371953	NM_000314.4	27	Tat/Aat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287446	46287446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	298	724	1	ENST00000334344.6:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000334344	NM_152641.2	1769	Cga/Tga																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041807	14041807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	336	691	1	ENST00000311895.7:c.2354G>A	p.Ser785Asn	p.S785N	ENST00000311895	NM_005236.2	785	aGt/aAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	91	77	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	427	243	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55561911	55561911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	83	249	0	ENST00000288135.5:c.301C>A	p.His101Asn	p.H101N	ENST00000288135	NM_000222.2	101	Cac/Aac																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149503842	149503842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	58	221	0	ENST00000261799.4:c.1994T>C	p.Val665Ala	p.V665A	ENST00000261799	NM_002609.3	665	gTc/gCc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	303	196	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	37	68	0				ENST00000310581	NM_198253.2																																																																																
CARD11	84433	MSKCC	GRCh37	7	2968251	2968251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	214	226	0	ENST00000396946.4:c.1735G>A	p.Glu579Lys	p.E579K	ENST00000396946	NM_032415.4	579	Gag/Aag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64126867	64126867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	59	166	0	ENST00000334205.4:c.73G>A	p.Glu25Lys	p.E25K	ENST00000334205	NM_003942.2	25	Gag/Aag																																																																														
PGR	5241	MSKCC	GRCh37	11	100933477	100933477	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	129	244	0	ENST00000325455.5:c.1913A>T	p.Lys638Ile	p.K638I	ENST00000325455	NM_001202474.3	638	aAa/aTa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195370	102195370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	214	370	0	ENST00000263464.3:c.130C>T	p.Pro44Ser	p.P44S	ENST00000263464	NM_001165.4	44	Cct/Tct																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687154	37687154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	116	246	0	ENST00000447079.4:c.4058C>T	p.Thr1353Ile	p.T1353I	ENST00000447079	NM_015083.1	1353	aCt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	65	248	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	12	57	0				ENST00000310581	NM_198253.2																																																																																
TGFBR2	7048	MSKCC	GRCh37	3	30713536	30713536	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	31	122	0	ENST00000359013.4:c.936G>A	p.Trp312Ter	p.W312*	ENST00000359013	NM_001024847.2	312	tgG/tgA																																																																														
BRCA1	672	MSKCC	GRCh37	17	41276043	41276043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	62	247	0	ENST00000357654.3:c.71G>T	p.Cys24Phe	p.C24F	ENST00000357654	NM_007294.3	24	tGt/tTt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374317	31374317	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	54	194	0	ENST00000328111.2:c.316C>T	p.Arg106Ter	p.R106*	ENST00000328111	NM_006892.3	106	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139403382	139403424	+	frameshift_variant	Frame_Shift_Del	DEL	CTGACAGGTGCCGCCATGCAGGCAGGGCTGTGAGTCGCACTCA	CTGACAGGTGCCGCCATGCAGGCAGGGCTGTGAGTCGCACTCA	-			P-0004352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	113	179	0	ENST00000277541.6:c.3069_3111del	p.Asn1023LysfsTer142	p.N1023Kfs*142	ENST00000277541	NM_017617.3	1023	aaTGAGTGCGACTCACAGCCCTGCCTGCATGGCGGCACCTGTCAG/aa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184613	11184613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	138	334	0	ENST00000361445.4:c.6604T>C	p.Phe2202Leu	p.F2202L	ENST00000361445	NM_004958.3	2202	Ttc/Ctc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089703	27089703	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	134	244	0	ENST00000324856.7:c.2659C>G	p.Pro887Ala	p.P887A	ENST00000324856	NM_006015.4	887	Cca/Gca																																																																														
CUL3	8452	MSKCC	GRCh37	2	225346666	225346666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	123	400	0	ENST00000264414.4:c.1972A>G	p.Ile658Val	p.I658V	ENST00000264414	NM_003590.4	658	Ata/Gta																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651513	52651513	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	123	371	0	ENST00000394830.3:c.1583A>T	p.Asn528Ile	p.N528I	ENST00000394830	NM_018313.4	528	aAt/aTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	41	91	0				ENST00000310581	NM_198253.2																																																																																
PTPRD	5789	MSKCC	GRCh37	9	8518221	8518221	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	188	319	0	ENST00000356435.5:c.1170A>C	p.Glu390Asp	p.E390D	ENST00000356435		390	gaA/gaC																																																																														
VHL	7428	MSKCC	GRCh37	3	10183752	10183752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	99	260	0	ENST00000256474.2:c.221del	p.Val74AlafsTer85	p.V74Afs*85	ENST00000256474	NM_000551.3	74	gTc/gc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	106	124	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0004393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	121	248	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527680	157527680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	214	301	0	ENST00000346085.5:c.5405G>T	p.Arg1802Leu	p.R1802L	ENST00000346085	NM_020732.3	1802	cGa/cTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044958	47044958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	272	378	0	ENST00000329236.7:c.2050C>G	p.Leu684Val	p.L684V	ENST00000329236	NM_001204466.1	684	Ctg/Gtg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797281	135797294	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGTACATTCCAT	AGGGTACATTCCAT	-			P-0004393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	212	354	0	ENST00000298552.3:c.575_588del	p.Tyr192LeufsTer21	p.Y192Lfs*21	ENST00000298552	NM_001162426.1	192	tATGGAATGTACCCT/t																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176054984	176054984	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	108	673	0	ENST00000367669.3:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000367669	NM_022457.5	357	Cga/Tga																																																																														
PARP1	142	MSKCC	GRCh37	1	226568877	226568877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	85	401	0	ENST00000366794.5:c.1192C>T	p.Leu398Phe	p.L398F	ENST00000366794	NM_001618.3	398	Ctc/Ttc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505393	25505393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	68	413	0	ENST00000264709.3:c.365C>T	p.Ala122Val	p.A122V	ENST00000264709	NM_175629.2	122	gCt/gTt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067329	37067329	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	91	430	0	ENST00000231790.2:c.1240G>T	p.Glu414Ter	p.E414*	ENST00000231790	NM_000249.3	414	Gag/Tag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067404	37067404	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	83	371	0	ENST00000231790.2:c.1315G>T	p.Glu439Ter	p.E439*	ENST00000231790	NM_000249.3	439	Gaa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142259779	142259779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	31	461	1	ENST00000350721.4:c.3548G>A	p.Arg1183Gln	p.R1183Q	ENST00000350721	NM_001184.3	1183	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	59	218	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191253	185191253	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56309231		P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	60	245	0	ENST00000265026.3:c.2134G>A	p.Glu712Lys	p.E712K	ENST00000265026	NM_004721.4	712	Gag/Aag																																																																														
KIT	3815	MSKCC	GRCh37	4	55593458	55593458	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	94	539	0	ENST00000288135.5:c.1615A>G	p.Ile539Val	p.I539V	ENST00000288135	NM_000222.2	539	Att/Gtt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38962430	38962430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	108	479	0	ENST00000357387.3:c.1702G>A	p.Glu568Lys	p.E568K	ENST00000357387	NM_152756.3	568	Gaa/Aaa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750453	57750453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	25	522	0	ENST00000274289.3:c.2015G>C	p.Arg672Pro	p.R672P	ENST00000274289	NM_006622.3	672	cGa/cCa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131976454	131976454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	82	487	0	ENST00000265335.6:c.3709C>G	p.Leu1237Val	p.L1237V	ENST00000265335		1237	Ctt/Gtt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287853	33287853	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	64	644	0	ENST00000374542.5:c.1400T>C	p.Leu467Pro	p.L467P	ENST00000374542	NM_001141970.1	467	cTg/cCg																																																																														
FYN	2534	MSKCC	GRCh37	6	112041125	112041125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	17	730	0	ENST00000368678.4:c.130G>A	p.Val44Met	p.V44M	ENST00000368678		44	Gtg/Atg																																																																														
SMO	6608	MSKCC	GRCh37	7	128846308	128846308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	71	483	0	ENST00000249373.3:c.1144G>A	p.Asp382Asn	p.D382N	ENST00000249373	NM_005631.4	382	Gat/Aat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949758	151949758	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	80	467	0	ENST00000262189.6:c.1342C>T	p.Gln448Ter	p.Q448*	ENST00000262189	NM_170606.2	448	Cag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341772	8341772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	103	552	0	ENST00000356435.5:c.4868G>C	p.Arg1623Thr	p.R1623T	ENST00000356435		1623	aGa/aCa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994327	21994327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	44	303	0	ENST00000361570.3:c.127G>A	p.Val43Met	p.V43M	ENST00000361570	NM_058195.3	43	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21994327	21994327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	44	303	0	ENST00000361570.3:c.127G>A	p.Val43Met	p.V43M	ENST00000361570	NM_058195.3	43	Gtg/Atg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127933401	127933401	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	97	774	2	ENST00000373547.4:c.134C>A	p.Ser45Ter	p.S45*	ENST00000373547	NM_002721.4	45	tCa/tAa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63817025	63817025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	75	334	0	ENST00000279873.7:c.996G>A	p.Met332Ile	p.M332I	ENST00000279873	NM_032199.2	332	atG/atA																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577161	64577161	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	49	470	0	ENST00000337652.1:c.421C>T	p.Gln141Ter	p.Q141*	ENST00000337652	NM_130803.2	141	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	98	427	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900831	3900831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	59	356	0	ENST00000262367.5:c.265G>A	p.Val89Met	p.V89M	ENST00000262367	NM_004380.2	89	Gtg/Atg																																																																														
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	52	517	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346888	89346888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	51	303	0	ENST00000301030.4:c.6062C>G	p.Ser2021Cys	p.S2021C	ENST00000301030	NM_001256183.1	2021	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577069	7577069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55819519		P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	61	449	1	ENST00000269305.4:c.869G>A	p.Arg290His	p.R290H	ENST00000269305	NM_001126112.2	290	cGc/cAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	83	577	2	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40379597	40379597	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	59	878	0	ENST00000293328.3:c.235G>C	p.Asp79His	p.D79H	ENST00000293328	NM_012448.3	79	Gat/Cat																																																																														
YES1	7525	MSKCC	GRCh37	18	739782	739782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	91	546	0	ENST00000314574.4:c.1090G>C	p.Asp364His	p.D364H	ENST00000314574	NM_005433.3	364	Gat/Cat																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197011	123197011	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	116	656	0	ENST00000218089.9:c.1777C>G	p.Gln593Glu	p.Q593E	ENST00000218089	NM_001042749.1	593	Cag/Gag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0004555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	15	209	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	32	364	0				ENST00000310581	NM_198253.2																																																																																
POLE	5426	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	18	297	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	72	1023	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47142964	47142964	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	87	1051	0	ENST00000409792.3:c.4999C>T	p.Gln1667Ter	p.Q1667*	ENST00000409792	NM_014159.6	1667	Cag/Tag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872213	45872213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	96	983	1	ENST00000391945.4:c.221C>T	p.Ser74Leu	p.S74L	ENST00000391945	NM_000400.3	74	tCa/tTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099283	157099283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	66	329	0	ENST00000346085.5:c.220G>A	p.Glu74Lys	p.E74K	ENST00000346085	NM_020732.3	74	Gaa/Aaa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797890	45797890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146044717		P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	103	1156	1	ENST00000372115.3:c.839G>A	p.Arg280His	p.R280H	ENST00000372115	NM_001048171.1	280	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056277	27056277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	91	746	0	ENST00000324856.7:c.1273C>T	p.Gln425Ter	p.Q425*	ENST00000324856	NM_006015.4	425	Cag/Tag																																																																														
MDM4	4194	MSKCC	GRCh37	1	204494686	204494686	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	69	1197	0	ENST00000367182.3:c.40G>C	p.Asp14His	p.D14H	ENST00000367182	NM_001278516.1	14	Gac/Cac																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881603	111881603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	88	1134	1	ENST00000393256.3:c.281G>C	p.Ser94Thr	p.S94T	ENST00000393256	NM_006538.4	94	aGt/aCt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368470	225368470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	79	986	0	ENST00000264414.4:c.1276G>C	p.Asp426His	p.D426H	ENST00000264414	NM_003590.4	426	Gat/Cat																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670325	134670325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	68	983	0	ENST00000398015.3:c.236G>A	p.Arg79Gln	p.R79Q	ENST00000398015	NM_004441.4	79	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249441	153249441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	63	964	1	ENST00000281708.4:c.1337G>T	p.Trp446Leu	p.W446L	ENST00000281708	NM_033632.3	446	tGg/tTg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131977883	131977883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	59	712	1	ENST00000265335.6:c.3766C>T	p.Arg1256Cys	p.R1256C	ENST00000265335		1256	Cgc/Tgc																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271495	26271495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1546	183	1697	3	ENST00000305910.3:c.118C>T	p.His40Tyr	p.H40Y	ENST00000305910	NM_003534.2	40	Cat/Tat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502187	157502187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	77	661	1	ENST00000346085.5:c.3220G>A	p.Asp1074Asn	p.D1074N	ENST00000346085	NM_020732.3	1074	Gac/Aac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527328	157527328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	71	719	0	ENST00000346085.5:c.5053G>A	p.Glu1685Lys	p.E1685K	ENST00000346085	NM_020732.3	1685	Gag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116417466	116417466	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	57	954	0	ENST00000397752.3:c.3283G>C	p.Gly1095Arg	p.G1095R	ENST00000397752	NM_000245.2	1095	Ggg/Cgg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148524359	148524359	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	43	595	0	ENST00000320356.2:c.626-1G>A		p.X209_splice	ENST00000320356	NM_004456.4	209																																																																															
EZH2	2146	MSKCC	GRCh37	7	148526900	148526900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	82	1087	0	ENST00000320356.2:c.404G>A	p.Gly135Glu	p.G135E	ENST00000320356	NM_004456.4	135	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151835952	151835952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	80	1187	0	ENST00000262189.6:c.14572G>A	p.Glu4858Lys	p.E4858K	ENST00000262189	NM_170606.2	4858	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449764	8449764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	44	814	0	ENST00000356435.5:c.3949G>C	p.Asp1317His	p.D1317H	ENST00000356435		1317	Gac/Cac																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514272	69514272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	74	1106	0	ENST00000294312.3:c.409G>A	p.Glu137Lys	p.E137K	ENST00000294312	NM_005117.2	137	Gag/Aag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	394750	394750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	89	1147	0	ENST00000399788.2:c.4945G>A	p.Glu1649Lys	p.E1649K	ENST00000399788	NM_001042603.1	1649	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442926	49442926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	74	840	1	ENST00000301067.7:c.3982C>T	p.Arg1328Trp	p.R1328W	ENST00000301067	NM_003482.3	1328	Cgg/Tgg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004260	29004260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	87	1148	0	ENST00000282397.4:c.1033G>C	p.Glu345Gln	p.E345Q	ENST00000282397	NM_002019.4	345	Gaa/Caa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913783	32913783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	107	1874	0	ENST00000380152.3:c.5291C>T	p.Ser1764Leu	p.S1764L	ENST00000380152		1764	tCa/tTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913801	32913801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	115	1805	0	ENST00000380152.3:c.5309C>T	p.Ser1770Phe	p.S1770F	ENST00000380152		1770	tCt/tTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916220	9916220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	66	1022	1	ENST00000330684.3:c.2069C>T	p.Thr690Met	p.T690M	ENST00000330684	NM_001134407.1	690	aCg/aTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15976770	15976770	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	60	1237	0	ENST00000268712.3:c.3784G>T	p.Glu1262Ter	p.E1262*	ENST00000268712	NM_006311.3	1262	Gag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15995318	15995318	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	78	1028	0	ENST00000268712.3:c.2875C>G	p.Leu959Val	p.L959V	ENST00000268712	NM_006311.3	959	Ctc/Gtc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30320296	30320296	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	84	1025	0	ENST00000322652.5:c.1237A>T	p.Arg413Ter	p.R413*	ENST00000322652	NM_015355.2	413	Aga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879888	37879888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	87	791	0	ENST00000269571.5:c.2183C>T	p.Ser728Phe	p.S728F	ENST00000269571		728	tCt/tTt																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73774768	73774768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	102	829	1	ENST00000254810.4:c.319G>A	p.Asp107Asn	p.D107N	ENST00000254810	NM_005324.3	107	Gat/Aat																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39595469	39595469	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	65	1191	1	ENST00000262039.4:c.1355C>A	p.Ser452Ter	p.S452*	ENST00000262039	NM_002647.2	452	tCa/tAa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223350	2223350	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	105	1225	0	ENST00000398665.3:c.3461C>G	p.Pro1154Arg	p.P1154R	ENST00000398665	NM_032482.2	1154	cCt/cGt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355142	15355142	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	43	534	0	ENST00000263377.2:c.2481C>G	p.Ile827Met	p.I827M	ENST00000263377	NM_058243.2	827	atC/atG																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52729001	52729001	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	77	998	0	ENST00000322088.6:c.1693G>C	p.Glu565Gln	p.E565Q	ENST00000322088	NM_014225.5	565	Gag/Cag																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206722	36206722	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	96	488	0	ENST00000300305.3:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000300305		264	Cag/Tag																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45651264	45651264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	126	1205	0	ENST00000407780.3:c.761C>T	p.Ala254Val	p.A254V	ENST00000407780	NM_001283052.1	254	gCg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438545	49438549	+	frameshift_variant	Frame_Shift_Del	DEL	CATCG	CATCG	-			P-0004567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	77	1024	0	ENST00000301067.7:c.4941_4945del	p.Asp1648AlafsTer5	p.D1648Afs*5	ENST00000301067	NM_003482.3	1647	acCGATGag/acag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11210270	11210270	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	125	350	0	ENST00000361445.4:c.4483C>T	p.Gln1495Ter	p.Q1495*	ENST00000361445	NM_004958.3	1495	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298606	11298606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199712134		P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	107	321	0	ENST00000361445.4:c.1855C>T	p.Arg619Cys	p.R619C	ENST00000361445	NM_004958.3	619	Cgc/Tgc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120484315	120484315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	192	426	0	ENST00000256646.2:c.2815C>T	p.Pro939Ser	p.P939S	ENST00000256646	NM_024408.3	939	Ccg/Tcg																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518557	204518557	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	36	267	0	ENST00000367182.3:c.1220T>A	p.Ile407Asn	p.I407N	ENST00000367182	NM_001278516.1	407	aTc/aAc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158595059	158595059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	158	520	0	ENST00000263640.3:c.1288C>T	p.Pro430Ser	p.P430S	ENST00000263640	NM_001105.4	430	Ccg/Tcg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589809	212589809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	91	285	0	ENST00000342788.4:c.733G>A	p.Asp245Asn	p.D245N	ENST00000342788	NM_005235.2	245	Gac/Aac																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651505	52651505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	204	519	0	ENST00000394830.3:c.1591C>T	p.Leu531Phe	p.L531F	ENST00000394830	NM_018313.4	531	Ctt/Ttt																																																																														
KDR	3791	MSKCC	GRCh37	4	55946212	55946212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	104	397	0	ENST00000263923.4:c.3967G>A	p.Glu1323Lys	p.E1323K	ENST00000263923	NM_002253.2	1323	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55948135	55948135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	74	388	0	ENST00000263923.4:c.3836C>T	p.Ser1279Phe	p.S1279F	ENST00000263923	NM_002253.2	1279	tCt/tTt																																																																														
TET2	54790	MSKCC	GRCh37	4	106196994	106196994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	151	369	0	ENST00000380013.4:c.5327C>T	p.Ser1776Phe	p.S1776F	ENST00000380013	NM_001127208.2	1776	tCt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1293472	1293472	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	139	303	0	ENST00000310581.5:c.1529G>A	p.Trp510Ter	p.W510*	ENST00000310581	NM_198253.2	510	tGg/tAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	55	121	0				ENST00000310581	NM_198253.2																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149497229	149497229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	131	302	0	ENST00000261799.4:c.3089C>T	p.Pro1030Leu	p.P1030L	ENST00000261799	NM_002609.3	1030	cCc/cTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514544	149514544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	116	310	0	ENST00000261799.4:c.400G>A	p.Glu134Lys	p.E134K	ENST00000261799	NM_002609.3	134	Gaa/Aaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665463	176665463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	114	274	0	ENST00000439151.2:c.4147C>T	p.Pro1383Ser	p.P1383S	ENST00000439151	NM_022455.4	1383	Cca/Tca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184992	32184992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	155	387	0	ENST00000375023.3:c.1676C>T	p.Pro559Leu	p.P559L	ENST00000375023	NM_004557.3	559	cCc/cTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982080	93982080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	461	510	0	ENST00000369303.4:c.1385C>T	p.Ser462Phe	p.S462F	ENST00000369303	NM_004440.3	462	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120885	94120885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	155	533	0	ENST00000369303.4:c.166G>A	p.Glu56Lys	p.E56K	ENST00000369303	NM_004440.3	56	Gaa/Aaa																																																																														
FYN	2534	MSKCC	GRCh37	6	112020775	112020775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1250	177	589	0	ENST00000368678.4:c.796C>T	p.Arg266Cys	p.R266C	ENST00000368678		266	Cgt/Tgt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658356	117658356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	295	571	0	ENST00000368508.3:c.5227C>T	p.Pro1743Ser	p.P1743S	ENST00000368508	NM_002944.2	1743	Cca/Tca																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519298	137519298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	60	340	0	ENST00000367739.4:c.1340C>T	p.Thr447Ile	p.T447I	ENST00000367739	NM_000416.2	447	aCc/aTc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023019	150023019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	176	512	0	ENST00000253339.5:c.244C>T	p.Arg82Ter	p.R82*	ENST00000253339		82	Cga/Tga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265409	152265409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	65	280	0	ENST00000206249.3:c.862G>A	p.Ala288Thr	p.A288T	ENST00000206249	NM_000125.3	288	Gct/Act																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976817	2976817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	139	501	0	ENST00000396946.4:c.1195G>A	p.Glu399Lys	p.E399K	ENST00000396946	NM_032415.4	399	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268989	55268989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	149	355	0	ENST00000275493.2:c.3055C>T	p.Pro1019Ser	p.P1019S	ENST00000275493	NM_005228.3	1019	Cca/Tca																																																																														
HGF	3082	MSKCC	GRCh37	7	81336630	81336630	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	129	406	0	ENST00000222390.5:c.1592C>G	p.Thr531Ser	p.T531S	ENST00000222390	NM_000601.4	531	aCt/aGt																																																																														
MET	4233	MSKCC	GRCh37	7	116409831	116409831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	165	364	0	ENST00000397752.3:c.2716G>A	p.Glu906Lys	p.E906K	ENST00000397752	NM_000245.2	906	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518336	8518336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	129	236	1	ENST00000356435.5:c.1055C>T	p.Ser352Phe	p.S352F	ENST00000356435		352	tCt/tTt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342839	87342839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	128	233	0	ENST00000277120.3:c.1124C>T	p.Ser375Phe	p.S375F	ENST00000277120		375	tCt/tTt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87359975	87359975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	103	281	0	ENST00000277120.3:c.1283G>A	p.Arg428Gln	p.R428Q	ENST00000277120		428	cGg/cAg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98218574	98218574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	100	315	0	ENST00000331920.6:c.3290C>T	p.Thr1097Ile	p.T1097I	ENST00000331920	NM_000264.3	1097	aCc/aTc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249626	110249626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	112	291	1	ENST00000374672.4:c.1049C>T	p.Ser350Phe	p.S350F	ENST00000374672	NM_004235.4	350	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399895	139399895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	118	416	0	ENST00000277541.6:c.4453G>A	p.Asp1485Asn	p.D1485N	ENST00000277541	NM_017617.3	1485	Gac/Aac																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100451	8100451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	138	410	0	ENST00000346208.3:c.425C>T	p.Ser142Leu	p.S142L	ENST00000346208		142	tCg/tTg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115924	8115924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	94	251	0	ENST00000346208.3:c.1270C>T	p.Pro424Ser	p.P424S	ENST00000346208		424	Ccg/Tcg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63817033	63817033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	114	300	0	ENST00000279873.7:c.1004G>A	p.Arg335Lys	p.R335K	ENST00000279873	NM_032199.2	335	aGg/aAg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104309776	104309776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	159	423	0	ENST00000369902.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000369902	NM_016169.3	123	Cgt/Tgt																																																																														
CBL	867	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	200	212	0	ENST00000264033.4:c.1096-1G>C		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																															
GLI1	2735	MSKCC	GRCh37	12	57864141	57864141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	182	494	0	ENST00000228682.2:c.1618G>A	p.Glu540Lys	p.E540K	ENST00000228682	NM_005269.2	540	Gaa/Aaa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864883	57864883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	189	575	0	ENST00000228682.2:c.2360C>T	p.Ser787Phe	p.S787F	ENST00000228682	NM_005269.2	787	tCt/tTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133215766	133215766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	115	376	0	ENST00000320574.5:c.5497C>T	p.His1833Tyr	p.H1833Y	ENST00000320574	NM_006231.2	1833	Cat/Tat																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68934917	68934917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	180	438	0	ENST00000487270.1:c.986C>T	p.Pro329Leu	p.P329L	ENST00000487270	NM_133509.3	329	cCc/cTc																																																																														
MGA	23269	MSKCC	GRCh37	15	41961591	41961591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	181	566	0	ENST00000219905.7:c.499C>T	p.His167Tyr	p.H167Y	ENST00000219905	NM_001164273.1	167	Cat/Tat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483877	88483877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	131	363	0	ENST00000360948.2:c.1693G>A	p.Asp565Asn	p.D565N	ENST00000360948	NM_001012338.2	565	Gac/Aac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274210	10274211	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	65	163	1	ENST00000330684.3:c.58_59delinsAA	p.Gly20Asn	p.G20N	ENST00000330684	NM_001134407.1	20	GGt/AAt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23637601	23637601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	186	460	0	ENST00000261584.4:c.2704G>A	p.Asp902Asn	p.D902N	ENST00000261584	NM_024675.3	902	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845844	72845844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	211	615	0	ENST00000268489.5:c.3623C>T	p.Ser1208Leu	p.S1208L	ENST00000268489	NM_006885.3	1208	tCg/tTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81957171	81957171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	155	421	0	ENST00000359376.3:c.2389C>T	p.His797Tyr	p.H797Y	ENST00000359376	NM_002661.3	797	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578476	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	312	294	1	ENST00000269305.4:c.454_455delinsAA	p.Pro152Lys	p.P152K	ENST00000269305	NM_001126112.2	152	CCg/AAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29548939	29548939	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	75	158	0	ENST00000358273.4:c.1713G>A	p.Trp571Ter	p.W571*	ENST00000358273	NM_001042492.2	571	tgG/tgA																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884031	37884031	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	81	364	0	ENST00000269571.5:c.3502G>T	p.Glu1168Ter	p.E1168*	ENST00000269571		1168	Gaa/Taa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56434906	56434906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	76	291	0	ENST00000407977.2:c.2231C>T	p.Pro744Leu	p.P744L	ENST00000407977		744	cCt/cTt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50920433	50920433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	120	346	0	ENST00000440232.2:c.3125C>T	p.Ser1042Phe	p.S1042F	ENST00000440232	NM_002691.3	1042	tCc/tTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561250	9561250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	157	326	0	ENST00000353224.5:c.532G>A	p.Gly178Arg	p.G178R	ENST00000353224	NM_177990.2	178	Ggg/Agg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306689	41306689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	139	310	0	ENST00000373198.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000373198	NM_133170.3	324	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41521892	41521892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1155	170	442	0	ENST00000263253.7:c.754C>T	p.Pro252Ser	p.P252S	ENST00000263253	NM_001429.3	252	Cct/Tct																																																																														
EP300	2033	MSKCC	GRCh37	22	41545129	41545129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	195	550	0	ENST00000263253.7:c.2329G>A	p.Val777Ile	p.V777I	ENST00000263253	NM_001429.3	777	Gta/Ata																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15833876	15833876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	84	94	0	ENST00000307771.7:c.634G>A	p.Glu212Lys	p.E212K	ENST00000307771	NM_005089.3	212	Gag/Aag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410204	63410204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	165	206	0	ENST00000330258.3:c.2963C>T	p.Pro988Leu	p.P988L	ENST00000330258	NM_152424.3	988	cCa/cTa																																																																														
RB1	5925	MSKCC	GRCh37	13	48954211	48954242	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAATTTTAGGTAAATTTTTTACTTTTAGTAA	AAAATTTTAGGTAAATTTTTTACTTTTAGTAA	-			P-0004650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	271	370	0	ENST00000267163.4:c.1420_1421+30del		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	81	223	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0004679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	214	645	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	155	331	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0004679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	400	458	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247244	153247244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	258	764	0	ENST00000281708.4:c.1558G>A	p.Asp520Asn	p.D520N	ENST00000281708	NM_033632.3	520	Gat/Aat																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	824	581	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193099332	193099332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	460	527	0	ENST00000367435.3:c.266C>T	p.Pro89Leu	p.P89L	ENST00000367435	NM_024529.4	89	cCt/cTt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082958	16082958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	65	211	0	ENST00000281043.3:c.772G>A	p.Asp258Asn	p.D258N	ENST00000281043	NM_005378.4	258	Gac/Aac																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047266	128047266	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	139	525	0	ENST00000285398.2:c.656C>T	p.Ala219Val	p.A219V	ENST00000285398	NM_000122.1	219	gCc/gTc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191527	185191527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	125	319	1	ENST00000265026.3:c.2408G>A	p.Arg803Gln	p.R803Q	ENST00000265026	NM_004721.4	803	cGa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189456556	189456556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	121	524	0	ENST00000264731.3:c.317C>T	p.Pro106Leu	p.P106L	ENST00000264731	NM_003722.4	106	cCc/cTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356223	66356223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	136	535	1	ENST00000273854.3:c.1274C>T	p.Ser425Phe	p.S425F	ENST00000273854	NM_004439.5	425	tCt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	83	399	0				ENST00000310581	NM_198253.2																																																																																
FGFR4	2264	MSKCC	GRCh37	5	176519753	176519753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	112	612	0	ENST00000292408.4:c.1025C>T	p.Ser342Phe	p.S342F	ENST00000292408	NM_213647.1	342	tCc/tTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638483	176638483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	104	537	0	ENST00000439151.2:c.3083C>T	p.Ser1028Phe	p.S1028F	ENST00000439151	NM_022455.4	1028	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066636	94066636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	198	859	0	ENST00000369303.4:c.1123G>A	p.Glu375Lys	p.E375K	ENST00000369303	NM_004440.3	375	Gag/Aag																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1184	183	670	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389231	8389231	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	100	555	1	ENST00000356435.5:c.4386+1G>A		p.X1462_splice	ENST00000356435		1462																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118376070	118376070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	158	532	0	ENST00000534358.1:c.9463G>A	p.Gly3155Arg	p.G3155R	ENST00000534358	NM_005933.3	3155	Gga/Aga																																																																														
CBL	867	MSKCC	GRCh37	11	119142584	119142585	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	117	575	1	ENST00000264033.4:c.583_584delinsAT	p.Gly195Met	p.G195M	ENST00000264033	NM_005188.3	195	GGg/ATg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285793	46285793	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	139	499	0	ENST00000334344.6:c.5062-1G>A		p.X1688_splice	ENST00000334344	NM_152641.2	1688																																																																															
IGF1	3479	MSKCC	GRCh37	12	102813334	102813334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	200	613	1	ENST00000307046.8:c.355C>T	p.Arg119Cys	p.R119C	ENST00000307046	NM_001111285.1	119	Cgc/Tgc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601310	28601310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	298	597	0	ENST00000241453.7:c.2122G>A	p.Glu708Lys	p.E708K	ENST00000241453	NM_004119.2	708	Gaa/Aaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622539	28622539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	235	507	0	ENST00000241453.7:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000241453	NM_004119.2	360	Gaa/Aaa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609381	81609381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	205	779	0	ENST00000298171.2:c.979G>A	p.Glu327Lys	p.E327K	ENST00000298171	NM_000369.2	327	Gaa/Aaa																																																																														
BLM	641	MSKCC	GRCh37	15	91292967	91292967	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	153	533	0	ENST00000355112.3:c.469A>G	p.Met157Val	p.M157V	ENST00000355112	NM_000057.2	157	Atg/Gtg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129622	2129622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	170	638	0	ENST00000219476.3:c.3349G>A	p.Gly1117Arg	p.G1117R	ENST00000219476	NM_000548.3	1117	Ggg/Agg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37871777	37871777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147382623		P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	139	544	1	ENST00000269571.5:c.1301G>A	p.Arg434Gln	p.R434Q	ENST00000269571		434	cGa/cAa																																																																														
RARA	5914	MSKCC	GRCh37	17	38508290	38508290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	199	556	0	ENST00000254066.5:c.598C>T	p.Pro200Ser	p.P200S	ENST00000254066	NM_000964.3	200	Cct/Tct																																																																														
BRCA1	672	MSKCC	GRCh37	17	41209118	41209118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	163	654	2	ENST00000357654.3:c.5228G>T	p.Gly1743Val	p.G1743V	ENST00000357654	NM_007294.3	1743	gGa/gTa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760695	59760695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	190	688	0	ENST00000259008.2:c.3712C>T	p.Pro1238Ser	p.P1238S	ENST00000259008	NM_032043.2	1238	Cct/Tct																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134239	11134239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	131	549	0	ENST00000344626.4:c.2905C>T	p.His969Tyr	p.H969Y	ENST00000344626	NM_003072.3	969	Cac/Tac																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525065	9525065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	147	751	1	ENST00000353224.5:c.1820C>T	p.Pro607Leu	p.P607L	ENST00000353224	NM_177990.2	607	cCc/cTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747129	40747129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	155	504	0	ENST00000373198.4:c.2953G>A	p.Glu985Lys	p.E985K	ENST00000373198	NM_133170.3	985	Gag/Aag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411014	63411014	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	189	786	0	ENST00000330258.3:c.2153T>G	p.Leu718Arg	p.L718R	ENST00000330258	NM_152424.3	718	cTg/cGg																																																																														
RB1	5925	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	57	406	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0005266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	45	398	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187191	11187191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	30	520	0	ENST00000361445.4:c.6227G>T	p.Arg2076Leu	p.R2076L	ENST00000361445	NM_004958.3	2076	cGa/cTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377027	118377027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	67	432	0	ENST00000534358.1:c.10420G>T	p.Asp3474Tyr	p.D3474Y	ENST00000534358	NM_005933.3	3474	Gat/Tat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857647	9857647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	62	411	0	ENST00000330684.3:c.3754C>A	p.Gln1252Lys	p.Q1252K	ENST00000330684	NM_001134407.1	1252	Cag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918622	44918622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	111	293	0	ENST00000377967.4:c.1105C>T	p.Gln369Ter	p.Q369*	ENST00000377967	NM_021140.2	369	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	101	250	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	390	430	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	534	367	2	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55524236	55524236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	558	486	0	ENST00000288135.5:c.55C>T	p.Arg19Cys	p.R19C	ENST00000288135	NM_000222.2	19	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108200961	108200961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	208	252	0	ENST00000278616.4:c.7328G>A	p.Arg2443Gln	p.R2443Q	ENST00000278616	NM_000051.3	2443	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059213	27059213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	254	418	0	ENST00000324856.7:c.1850C>T	p.Ser617Leu	p.S617L	ENST00000324856	NM_006015.4	617	tCa/tTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105796	27105796	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	610	448	0	ENST00000324856.7:c.5407G>T	p.Glu1803Ter	p.E1803*	ENST00000324856	NM_006015.4	1803	Gag/Tag																																																																														
REL	5966	MSKCC	GRCh37	2	61144146	61144146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	122	214	0	ENST00000295025.8:c.529G>A	p.Asp177Asn	p.D177N	ENST00000295025	NM_002908.2	177	Gac/Aac																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52677288	52677288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	283	424	1	ENST00000394830.3:c.971G>A	p.Arg324Lys	p.R324K	ENST00000394830	NM_018313.4	324	aGa/aAa																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186507037	186507037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	246	595	0	ENST00000323963.5:c.1203G>C	p.Met401Ile	p.M401I	ENST00000323963		401	atG/atC																																																																														
APC	324	MSKCC	GRCh37	5	112179006	112179006	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	84	215	0	ENST00000257430.4:c.7715C>G	p.Ser2572Ter	p.S2572*	ENST00000257430	NM_000038.5	2572	tCa/tGa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286874	33286874	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	114	322	0	ENST00000374542.5:c.2063C>G	p.Ser688Cys	p.S688C	ENST00000374542	NM_001141970.1	688	tCt/tGt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13940403	13940403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	107	224	1	ENST00000405192.2:c.1103G>A	p.Arg368His	p.R368H	ENST00000405192	NM_001163147.1	368	cGt/cAt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148543643	148543643	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs199645805		P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	70	238	1	ENST00000320356.2:c.165C>G	p.Ile55Met	p.I55M	ENST00000320356	NM_004456.4	55	atC/atG																																																																														
MYC	4609	MSKCC	GRCh37	8	128751185	128751185	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186663828		P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	92	236	0	ENST00000377970.2:c.722C>T	p.Ser241Leu	p.S241L	ENST00000377970	NM_002467.4	241	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108138018	108138018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	305	424	1	ENST00000278616.4:c.2587G>A	p.Asp863Asn	p.D863N	ENST00000278616	NM_000051.3	863	Gat/Aat																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858600	57858600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	383	697	0	ENST00000228682.2:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000228682	NM_005269.2	113	cGa/cAa																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68353904	68353904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	155	314	0	ENST00000487270.1:c.739G>A	p.Glu247Lys	p.E247K	ENST00000487270	NM_133509.3	247	Gag/Aag																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348810	11348810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	35	116	0	ENST00000332029.2:c.526G>C	p.Glu176Gln	p.E176Q	ENST00000332029	NM_003745.1	176	Gag/Cag																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348912	11348912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	65	221	0	ENST00000332029.2:c.424G>A	p.Glu142Lys	p.E142K	ENST00000332029	NM_003745.1	142	Gag/Aag																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348956	11348956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	88	273	0	ENST00000332029.2:c.380G>A	p.Arg127His	p.R127H	ENST00000332029	NM_003745.1	127	cGc/cAc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243508	41243508	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	143	372	0	ENST00000357654.3:c.4040G>C	p.Arg1347Thr	p.R1347T	ENST00000357654	NM_007294.3	1347	aGa/aCa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78865541	78865541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	121	267	0	ENST00000306801.3:c.2005C>T	p.His669Tyr	p.H669Y	ENST00000306801	NM_020761.2	669	Cat/Tat																																																																														
NF2	4771	MSKCC	GRCh37	22	30051624	30051624	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	252	383	0	ENST00000338641.4:c.558G>C	p.Glu186Asp	p.E186D	ENST00000338641	NM_000268.3	186	gaG/gaC																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53253979	53253979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	228	306	0	ENST00000375401.3:c.93C>G	p.Ile31Met	p.I31M	ENST00000375401	NM_004187.3	31	atC/atG																																																																														
SMO	6608	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0028447-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	10	53	0	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115269659	115269660	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0028447-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			144	518	656	0	ENST00000438362.2:c.1546_1547del	p.Ile516CysfsTer18	p.I516Cfs*18	ENST00000438362	NM_001242891.1	516	ATt/t																																																																														
KIT	3815	MSKCC	GRCh37	4	55593589	55593602	+	protein_altering_variant	In_Frame_Del	DEL	TGTATGAAGTACAG	TGTATGAAGTACAG	CA			P-0028447-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			104	259	443	2	ENST00000288135.5:c.1655_1668delinsCA	p.Met552_Gln556delinsThr	p.M552_Q556delinsT	ENST00000288135	NM_000222.2	552	aTGTATGAAGTACAG/aCA																																																																														
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031808-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			95	292	229	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
MSH3	4437	MSKCC	GRCh37	5	79974778	79974778	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031808-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	393	608	0	ENST00000265081.6:c.1206T>G	p.Phe402Leu	p.F402L	ENST00000265081	NM_002439.4	402	ttT/ttG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878689	151878689	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031808-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	280	409	0	ENST00000262189.6:c.6256del	p.Ser2086LeufsTer20	p.S2086Lfs*20	ENST00000262189	NM_170606.2	2086	Tct/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	18	463	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037191-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			981	26	747	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0037279-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	97	378	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740365	58740365	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037279-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			516	124	379	0	ENST00000305921.3:c.1270G>T	p.Glu424Ter	p.E424*	ENST00000305921	NM_003620.3	424	Gag/Tag																																																																														
FH	2271	MSKCC	GRCh37	1	241675399	241675399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037279-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	70	352	0	ENST00000366560.3:c.423G>T	p.Trp141Cys	p.W141C	ENST00000366560	NM_000143.3	141	tgG/tgT																																																																														
TP53	7157	MSKCC	GRCh37	17	7579722	7579722	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0037279-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	60	616	0	ENST00000269305.4:c.75-1G>A		p.X25_splice	ENST00000269305	NM_001126112.2	25																																																																															
FH	2271	MSKCC	GRCh37	1	241665833	241665833	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037279-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			703	144	407	0	ENST00000366560.3:c.1146G>T	p.Met382Ile	p.M382I	ENST00000366560	NM_000143.3	382	atG/atT																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048797	180048797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037279-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			890	236	812	1	ENST00000261937.6:c.1765C>T	p.Arg589Cys	p.R589C	ENST00000261937	NM_182925.4	589	Cgc/Tgc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031939	26031939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	99	334	0	ENST00000244661.2:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000244661	NM_003537.3	117	cGa/cAa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118947	70118947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	253	684	0	ENST00000245479.2:c.519G>T	p.Lys173Asn	p.K173N	ENST00000245479	NM_000346.3	173	aaG/aaT																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968154	18968154	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	164	643	0	ENST00000262803.5:c.1994A>C	p.Gln665Pro	p.Q665P	ENST00000262803	NM_002911.3	665	cAg/cCg																																																																														
CIC	23152	MSKCC	GRCh37	19	42799327	42799347	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CTGCCACAGGCAGGTGAGGGA	CTGCCACAGGCAGGTGAGGGA	-			P-0039066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	48	357	0	ENST00000575354.2:c.4812_*5del		p.*1604*	ENST00000575354	NM_015125.3	1604																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860191	151860191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	112	399	0	ENST00000262189.6:c.10471G>A	p.Gly3491Arg	p.G3491R	ENST00000262189	NM_170606.2	3491	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	240	591	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251007	99251007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	119	580	0	ENST00000268035.6:c.311C>T	p.Thr104Met	p.T104M	ENST00000268035	NM_000875.3	104	aCg/aTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5064997	5065001	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGT	GCCGT	-			P-0039159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	55	324	0	ENST00000381652.3:c.1173_1177del	p.Val392Ter	p.V392*	ENST00000381652	NM_004972.3	391	GCCGTg/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	406	457	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	348	599	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714573	52714575	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0039161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	378	631	0	ENST00000322088.6:c.332_334del	p.Ser111del	p.S111del	ENST00000322088	NM_014225.5	111	TCC/-																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683721	162683721	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	428	476	0	ENST00000366898.1:c.248C>G	p.Thr83Ser	p.T83S	ENST00000366898	NM_004562.2	83	aCt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	523	735	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	346	427	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	342	361	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81957157	81957157	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202210217		P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	148	606	1	ENST00000359376.3:c.2375G>A	p.Arg792His	p.R792H	ENST00000359376	NM_002661.3	792	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112137078	112137078	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	117	357	0	ENST00000257430.4:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000257430	NM_000038.5	278	Cag/Tag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412602	63412602	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	644	327	0	ENST00000330258.3:c.565C>T	p.Gln189Ter	p.Q189*	ENST00000330258	NM_152424.3	189	Caa/Taa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786733	3786734	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	465	668	0	ENST00000262367.5:c.4477dup	p.Ile1493AsnfsTer26	p.I1493Nfs*26	ENST00000262367	NM_004380.2	1493	ata/aAta																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118954	70118954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	587	783	2	ENST00000245479.2:c.526C>T	p.Pro176Ser	p.P176S	ENST00000245479	NM_000346.3	176	Ccg/Tcg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231708	66231708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	24	438	0	ENST00000273854.3:c.1992C>G	p.His664Gln	p.H664Q	ENST00000273854	NM_004439.5	664	caC/caG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	156	582	0	ENST00000269305.4:c.741_742insA	p.Arg248ThrfsTer16	p.R248Tfs*16	ENST00000269305	NM_001126112.2	247	-/A																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66233092	66233092	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	39	362	0	ENST00000273854.3:c.1907A>G	p.His636Arg	p.H636R	ENST00000273854	NM_004439.5	636	cAt/cGt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787758	135787758	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	67	438	0	ENST00000298552.3:c.824A>G	p.Tyr275Cys	p.Y275C	ENST00000298552	NM_001162426.1	275	tAt/tGt																																																																														
CDH1	999	MSKCC	GRCh37	16	68842705	68842705	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	21	531	0	ENST00000261769.5:c.641T>G	p.Leu214Arg	p.L214R	ENST00000261769	NM_004360.3	214	cTg/cGg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	309	483	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
ATM	472	MSKCC	GRCh37	11	108143551	108143551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201780199		P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	205	316	1	ENST00000278616.4:c.3256C>T	p.Arg1086Cys	p.R1086C	ENST00000278616	NM_000051.3	1086	Cgc/Tgc																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	194	234	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
BLM	641	MSKCC	GRCh37	15	91312725	91312725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	217	350	1	ENST00000355112.3:c.2464C>T	p.Pro822Ser	p.P822S	ENST00000355112	NM_000057.2	822	Cct/Tct																																																																														
TP63	8626	MSKCC	GRCh37	3	189526134	189526134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	291	476	0	ENST00000264731.3:c.398C>T	p.Pro133Leu	p.P133L	ENST00000264731	NM_003722.4	133	cCc/cTc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11015734	11015734	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	219	405	0	ENST00000327064.4:c.328C>T	p.Gln110Ter	p.Q110*	ENST00000327064	NM_199141.1	110	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390935	89390935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	201	291	0	ENST00000336596.2:c.1001C>T	p.Ser334Phe	p.S334F	ENST00000336596	NM_005233.5	334	tCt/tTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589298	28589298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	181	243	0	ENST00000241453.7:c.2749G>A	p.Glu917Lys	p.E917K	ENST00000241453	NM_004119.2	917	Gaa/Aaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156836758	156836758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	1032	569	0	ENST00000524377.1:c.416C>T	p.Ser139Phe	p.S139F	ENST00000524377	NM_002529.3	139	tCc/tTc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14629152	14629152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	187	319	0	ENST00000254322.2:c.10G>A	p.Asp4Asn	p.D4N	ENST00000254322	NM_006145.1	4	Gac/Aac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16263712	16263712	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	39	387	1	ENST00000375759.3:c.10081C>A	p.Gln3361Lys	p.Q3361K	ENST00000375759	NM_015001.2	3361	Cag/Aag																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56772376	56772376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	219	436	1	ENST00000337432.4:c.230G>A	p.Gly77Asp	p.G77D	ENST00000337432	NM_058216.2	77	gGt/gAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097066	11097066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	362	653	0	ENST00000344626.4:c.557C>T	p.Ala186Val	p.A186V	ENST00000344626	NM_003072.3	186	gCc/gTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286772	212286772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	230	312	0	ENST00000342788.4:c.2924C>T	p.Ser975Leu	p.S975L	ENST00000342788	NM_005235.2	975	tCa/tTa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461488	138461488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	293	451	1	ENST00000289153.2:c.533C>T	p.Pro178Leu	p.P178L	ENST00000289153	NM_006219.2	178	cCa/cTa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803160	1803160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	359	632	0	ENST00000260795.2:c.512C>T	p.Thr171Ile	p.T171I	ENST00000260795		171	aCc/aTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106157315	106157315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	234	308	0	ENST00000380013.4:c.2216C>T	p.Pro739Leu	p.P739L	ENST00000380013	NM_001127208.2	739	cCt/cTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540271	187540271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	209	329	0	ENST00000441802.2:c.7469C>T	p.Pro2490Leu	p.P2490L	ENST00000441802	NM_005245.3	2490	cCt/cTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628644	187628644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	366	582	0	ENST00000441802.2:c.2338C>T	p.Leu780Phe	p.L780F	ENST00000441802	NM_005245.3	780	Ctt/Ttt																																																																														
MSH3	4437	MSKCC	GRCh37	5	80021339	80021339	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	306	385	0	ENST00000265081.6:c.1408C>T	p.Gln470Ter	p.Q470*	ENST00000265081	NM_002439.4	470	Cag/Tag																																																																														
BTK	695	MSKCC	GRCh37	X	100608917	100608996	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCACCGGACTGGAAATTTGGAGCCTACTGAGCTTGTGTATTCATCATCCAGGACATACCTGCAAGGGATTCAGGACTT	GACCACCGGACTGGAAATTTGGAGCCTACTGAGCTTGTGTATTCATCATCCAGGACATACCTGCAAGGGATTCAGGACTT	-			P-0039170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	42	387	0	ENST00000308731.7:c.1632-20_1691del		p.X544_splice	ENST00000308731	NM_000061.2	544																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	151	406	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573427	48573433	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCTAT	TGTCTAT	-			P-0039191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	20	181	0	ENST00000342988.3:c.12_18del	p.Met4IlefsTer12	p.M4Ifs*12	ENST00000342988	NM_005359.5	4	aTGTCTATt/at																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0039196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	364	465	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572248	64572248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	101	721	0	ENST00000337652.1:c.1406C>T	p.Ala469Val	p.A469V	ENST00000337652	NM_130803.2	469	gCg/gTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593586	55593615	+	protein_altering_variant	In_Frame_Del	DEL	CCATGTATGAAGTACAGTGGAAGGTTGTTG	CCATGTATGAAGTACAGTGGAAGGTTGTTG	TCA			P-0039196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	257	477	1	ENST00000288135.5:c.1652_1681delinsTCA	p.Pro551_Glu561delinsLeuLys	p.P551_E561delinsLK	ENST00000288135	NM_000222.2	551	cCCATGTATGAAGTACAGTGGAAGGTTGTTGag/cTCAag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440912	52440912	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	433	529	0	ENST00000460680.1:c.592G>T	p.Glu198Ter	p.E198*	ENST00000460680	NM_004656.3	198	Gag/Tag																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003206	143003206	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	144	450	0	ENST00000262992.4:c.2620C>T	p.Arg874Ter	p.R874*	ENST00000262992	NM_001101669.1	874	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	475	544	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	298	493	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	413	741	1	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg																																																																														
MED12	9968	MSKCC	GRCh37	X	70361743	70361744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	426	410	1	ENST00000374080.3:c.6423dup	p.Leu2142AlafsTer23	p.L2142Afs*23	ENST00000374080		2140	cag/caGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0039389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	657	644	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175211	112175212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	222	251	0	ENST00000257430.4:c.3924dup	p.Glu1309ArgfsTer6	p.E1309Rfs*6	ENST00000257430	NM_000038.5	1307	ata/atAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099397	27099397	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	162	590	0	ENST00000324856.7:c.3634C>T	p.Gln1212Ter	p.Q1212*	ENST00000324856	NM_006015.4	1212	Cag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120016	70120016	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	183	152	0	ENST00000245479.2:c.1018C>T	p.Gln340Ter	p.Q340*	ENST00000245479	NM_000346.3	340	Cag/Tag																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115269668	115269668	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	137	597	0	ENST00000438362.2:c.1538A>T	p.Lys513Ile	p.K513I	ENST00000438362	NM_001242891.1	513	aAa/aTa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972683	25972683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	495	480	0	ENST00000435504.4:c.1742G>T	p.Trp581Leu	p.W581L	ENST00000435504		581	tGg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	180	549	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	170	819	0	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
STK40	83931	MSKCC	GRCh37	1	36823932	36823932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	94	822	2	ENST00000373129.3:c.250C>T	p.Arg84Trp	p.R84W	ENST00000373129	NM_032017.1	84	Cgg/Tgg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25964944	25964944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	153	617	0	ENST00000435504.4:c.4262G>T	p.Cys1421Phe	p.C1421F	ENST00000435504		1421	tGc/tTc																																																																														
IRF4	3662	MSKCC	GRCh37	6	393175	393175	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139884486		P-0039390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	140	581	0	ENST00000380956.4:c.23G>A	p.Arg8Gln	p.R8Q	ENST00000380956	NM_001195286.1	8	cGa/cAa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0039398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	415	436	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426274	49426274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	298	927	2	ENST00000301067.7:c.12214G>A	p.Asp4072Asn	p.D4072N	ENST00000301067	NM_003482.3	4072	Gac/Aac																																																																														
POLE	5426	MSKCC	GRCh37	12	133241964	133241964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	342	711	1	ENST00000320574.5:c.2392G>A	p.Glu798Lys	p.E798K	ENST00000320574	NM_006231.2	798	Gag/Aag																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606174	81606174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	259	539	0	ENST00000298171.2:c.844C>G	p.His282Asp	p.H282D	ENST00000298171	NM_000369.2	282	Cac/Gac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576774	67576774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	83	384	0	ENST00000274335.5:c.856C>T	p.Leu286Phe	p.L286F	ENST00000274335		286	Ctc/Ttc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199979	138199980	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0039398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	520	575	1	ENST00000237289.4:c.1397_1398delinsAA	p.Ser466Lys	p.S466K	ENST00000237289	NM_001270507.1	466	aGC/aAA																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942845	68942845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	1953	614	1	ENST00000288368.4:c.657G>T	p.Glu219Asp	p.E219D	ENST00000288368	NM_024870.2	219	gaG/gaT																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94226074	94226079	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TAAAAA	TAAAAA	-			P-0039398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	164	138	0	ENST00000323929.3:c.-105-7_-105-2del		p.X35_splice	ENST00000323929	NM_005591.3	35																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0039400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	49	523	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	93	596	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581275	48581306	+	frameshift_variant	Frame_Shift_Del	DEL	GACATACAGCACCCCAGCTCTGTTAGCCCCAT	GACATACAGCACCCCAGCTCTGTTAGCCCCAT	TTA			P-0039400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	50	505	2	ENST00000342988.3:c.579_610delinsTTA	p.Glu193AspfsTer3	p.E193Dfs*3	ENST00000342988	NM_005359.5	193	gaGACATACAGCACCCCAGCTCTGTTAGCCCCATct/gaTTAct																																																																														
BRAF	673	MSKCC	GRCh37	7	140507764	140507764	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	11	333	0	ENST00000288602.6:c.707A>C	p.Asn236Thr	p.N236T	ENST00000288602	NM_004333.4	236	aAc/aCc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092829	27092829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	75	585	0	ENST00000324856.7:c.2850G>T	p.Met950Ile	p.M950I	ENST00000324856	NM_006015.4	950	atG/atT																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156830815	156830815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	142	425	0	ENST00000524377.1:c.89C>A	p.Ser30Tyr	p.S30Y	ENST00000524377	NM_002529.3	30	tCt/tAt																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245927414	245927414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	83	577	1	ENST00000388985.4:c.1114C>G	p.Gln372Glu	p.Q372E	ENST00000388985		372	Caa/Gaa																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94219232	94219232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	104	453	0	ENST00000323929.3:c.172G>T	p.Gly58Cys	p.G58C	ENST00000323929	NM_005591.3	58	Ggt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108121799	108121799	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	95	380	0	ENST00000278616.4:c.1607G>T	p.Cys536Phe	p.C536F	ENST00000278616	NM_000051.3	536	tGt/tTt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396689	396689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	145	637	0	ENST00000262320.3:c.337G>T	p.Asp113Tyr	p.D113Y	ENST00000262320	NM_003502.3	113	Gac/Tac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777819	3777819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1279	131	843	0	ENST00000262367.5:c.7229C>T	p.Pro2410Leu	p.P2410L	ENST00000262367	NM_004380.2	2410	cCc/cTc																																																																														
CBFB	865	MSKCC	GRCh37	16	67063702	67063702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	95	344	0	ENST00000412916.2:c.151G>A	p.Gly51Ser	p.G51S	ENST00000412916		51	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	201	687	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024476	16024476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	76	464	0	ENST00000268712.3:c.1742G>T	p.Arg581Leu	p.R581L	ENST00000268712	NM_006311.3	581	cGt/cTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29585401	29585401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	145	540	0	ENST00000358273.4:c.4213G>A	p.Val1405Ile	p.V1405I	ENST00000358273	NM_001042492.2	1405	Gta/Ata																																																																														
BRCA1	672	MSKCC	GRCh37	17	41251813	41251813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	98	597	0	ENST00000357654.3:c.526A>G	p.Thr176Ala	p.T176A	ENST00000357654	NM_007294.3	176	Acg/Gcg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222807	5222807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	263	727	0	ENST00000357368.4:c.2996G>A	p.Gly999Asp	p.G999D	ENST00000357368	NM_002850.3	999	gGc/gAc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703630	47703631	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	132	542	2	ENST00000233146.2:c.2130_2131delinsTT	p.Arg711Ter	p.R711*	ENST00000233146	NM_000251.2	710	gcCCga/gcTTga																																																																														
ACVR1	90	MSKCC	GRCh37	2	158617406	158617406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	260	430	0	ENST00000263640.3:c.1250G>T	p.Arg417Leu	p.R417L	ENST00000263640	NM_001105.4	417	cGg/cTg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794402	242794402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	357	725	0	ENST00000334409.5:c.540C>A	p.Ser180Arg	p.S180R	ENST00000334409	NM_005018.2	180	agC/agA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9543648	9543648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	126	513	0	ENST00000353224.5:c.1506C>A	p.His502Gln	p.H502Q	ENST00000353224	NM_177990.2	502	caC/caA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735473	40735473	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	151	645	0	ENST00000373198.4:c.3400T>G	p.Cys1134Gly	p.C1134G	ENST00000373198	NM_133170.3	1134	Tgc/Ggc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747141	40747141	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	132	466	0	ENST00000373198.4:c.2942-1G>T		p.X981_splice	ENST00000373198	NM_133170.3	981																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770575	40770575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	118	506	0	ENST00000373198.4:c.2807G>T	p.Arg936Leu	p.R936L	ENST00000373198	NM_133170.3	936	cGa/cTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514555	41514555	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	118	497	1	ENST00000373198.4:c.106G>T	p.Glu36Ter	p.E36*	ENST00000373198	NM_133170.3	36	Gag/Tag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57474040	57474040	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	86	359	0	ENST00000371085.3:c.257G>T	p.Gly86Val	p.G86V	ENST00000371085	NM_000516.4	86	gGt/gTt																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22221705	22221705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	36	95	1	ENST00000215832.6:c.26C>T	p.Ala9Val	p.A9V	ENST00000215832	NM_002745.4	9	gCg/gTg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458608	12458608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	231	555	0	ENST00000287820.6:c.1225G>T	p.Asp409Tyr	p.D409Y	ENST00000287820	NM_015869.4	409	Gac/Tac																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936639	49936639	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	271	663	0	ENST00000296474.3:c.1288A>T	p.Ser430Cys	p.S430C	ENST00000296474	NM_002447.2	430	Agt/Tgt																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169993046	169993046	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	107	371	0	ENST00000295797.4:c.676A>T	p.Ser226Cys	p.S226C	ENST00000295797	NM_002740.5	226	Agt/Tgt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356240	66356240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	156	575	1	ENST00000273854.3:c.1257C>A	p.Ser419Arg	p.S419R	ENST00000273854	NM_004439.5	419	agC/agA																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081512	143081512	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	119	390	0	ENST00000262992.4:c.1562G>A	p.Trp521Ter	p.W521*	ENST00000262992	NM_001101669.1	521	tGg/tAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628395	187628395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	224	742	0	ENST00000441802.2:c.2587A>G	p.Thr863Ala	p.T863A	ENST00000441802	NM_005245.3	863	Aca/Gca																																																																														
TERT	7015	MSKCC	GRCh37	5	1294268	1294268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	214	733	0	ENST00000310581.5:c.733G>C	p.Glu245Gln	p.E245Q	ENST00000310581	NM_198253.2	245	Gag/Cag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675783	30675783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	297	790	2	ENST00000376406.3:c.2573A>G	p.Asp858Gly	p.D858G	ENST00000376406	NM_014641.2	858	gAc/gGc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180997	32180997	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	181	698	0	ENST00000375023.3:c.2353A>T	p.Arg785Trp	p.R785W	ENST00000375023	NM_004557.3	785	Agg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184760	32184760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	177	601	1	ENST00000375023.3:c.1823C>A	p.Pro608Gln	p.P608Q	ENST00000375023	NM_004557.3	608	cCa/cAa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33286881	33286881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	162	607	0	ENST00000374542.5:c.2056G>T	p.Val686Leu	p.V686L	ENST00000374542	NM_001141970.1	686	Gtg/Ttg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444362	50444362	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	170	447	0	ENST00000331340.3:c.292G>C	p.Asp98His	p.D98H	ENST00000331340	NM_006060.4	98	Gac/Cac																																																																														
RHEB	6009	MSKCC	GRCh37	7	151174431	151174431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	70	396	0	ENST00000262187.5:c.263C>T	p.Thr88Ile	p.T88I	ENST00000262187	NM_005614.3	88	aCa/aTa																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540164	23540164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	92	378	0	ENST00000380871.4:c.239C>A	p.Pro80His	p.P80H	ENST00000380871	NM_006167.3	80	cCc/cAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965473	68965473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	102	634	0	ENST00000288368.4:c.1085G>T	p.Arg362Leu	p.R362L	ENST00000288368	NM_024870.2	362	cGg/cTg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981465	70981465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	195	871	1	ENST00000276594.2:c.631C>A	p.Pro211Thr	p.P211T	ENST00000276594	NM_024504.3	211	Ccc/Acc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981627	70981627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	100	851	1	ENST00000276594.2:c.469G>T	p.Ala157Ser	p.A157S	ENST00000276594	NM_024504.3	157	Gct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389369	8389369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	42	459	1	ENST00000356435.5:c.4249G>A	p.Asp1417Asn	p.D1417N	ENST00000356435		1417	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	87	562	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	87	562	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	87	562	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
ATRX	546	MSKCC	GRCh37	X	76972614	76972614	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	155	414	0	ENST00000373344.5:c.127A>T	p.Asn43Tyr	p.N43Y	ENST00000373344	NM_000489.3	43	Aac/Tac																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627234	86627238	+	frameshift_variant	Frame_Shift_Del	DEL	TTATC	TTATC	-			P-0039402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	87	398	0	ENST00000274376.6:c.613_617delCTTAT	p.Leu205LysfsTer4	p.L205Kfs*4	ENST00000274376	NM_002890.2	203	agTTATCtt/agtt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438067	49438067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	104	685	1	ENST00000301067.7:c.5104C>T	p.Arg1702Ter	p.R1702*	ENST00000301067	NM_003482.3	1702	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720869	89720869	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	116	373	0	ENST00000371953.3:c.1023del	p.Phe341LeufsTer3	p.F341Lfs*3	ENST00000371953	NM_000314.4	340	aaT/aa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372252	55372252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	119	633	0	ENST00000297316.4:c.942G>C	p.Gln314His	p.Q314H	ENST00000297316	NM_022454.3	314	caG/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0039403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	539	744	5	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120502116	120502116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	212	488	1	ENST00000256646.2:c.1925G>T	p.Cys642Phe	p.C642F	ENST00000256646	NM_024408.3	642	tGt/tTt																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870249	155870249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1359	179	613	0	ENST00000368323.3:c.590C>G	p.Ser197Cys	p.S197C	ENST00000368323	NM_006912.5	197	tCt/tGt																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263956	104263956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	136	268	1	ENST00000369902.3:c.47C>T	p.Pro16Leu	p.P16L	ENST00000369902	NM_016169.3	16	cCg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790038	40790038	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	143	608	0	ENST00000373198.4:c.2693C>G	p.Thr898Arg	p.T898R	ENST00000373198	NM_133170.3	898	aCg/aGg																																																																														
KIT	3815	MSKCC	GRCh37	4	55597497	55597497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	265	434	3	ENST00000288135.5:c.2145C>G	p.Ser715Arg	p.S715R	ENST00000288135	NM_000222.2	715	agC/agG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	117	433	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	109	701	1	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																														
ATM	472	MSKCC	GRCh37	11	108198384	108198384	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs148432863		P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	32	426	1	ENST00000278616.4:c.6988C>G	p.Leu2330Val	p.L2330V	ENST00000278616	NM_000051.3	2330	Cta/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	175	762	0	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678476	88678476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	47	643	1	ENST00000360948.2:c.1060C>A	p.Gln354Lys	p.Q354K	ENST00000360948	NM_001012338.2	354	Caa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422910	49422910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	77	674	3	ENST00000301067.7:c.14185C>T	p.Arg4729Trp	p.R4729W	ENST00000301067	NM_003482.3	4729	Cgg/Tgg																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33446619	33446619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	39	601	0	ENST00000335858.7:c.14G>T	p.Arg5Met	p.R5M	ENST00000335858	NM_133629.2	5	aGg/aTg																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749455	41749455	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	173	536	0	ENST00000226382.2:c.340G>T	p.Glu114Ter	p.E114*	ENST00000226382	NM_003924.3	114	Gaa/Taa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133901	55133901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	28	339	0	ENST00000257290.5:c.1114G>T	p.Glu372Ter	p.E372*	ENST00000257290	NM_006206.4	372	Gaa/Taa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547398	106547398	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	54	378	0	ENST00000369096.4:c.635A>T	p.Tyr212Phe	p.Y212F	ENST00000369096	NM_001198.3	212	tAt/tTt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163909	152163909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	41	481	1	ENST00000206249.3:c.630G>T	p.Lys210Asn	p.K210N	ENST00000206249	NM_000125.3	210	aaG/aaT																																																																														
CDK6	1021	MSKCC	GRCh37	7	92244602	92244602	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	38	286	0	ENST00000265734.4:c.835-2A>C		p.X279_splice	ENST00000265734	NM_001259.6	279																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8526641	8526641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	60	403	0	ENST00000356435.5:c.554G>T	p.Gly185Val	p.G185V	ENST00000356435		185	gGt/gTt																																																																														
BTK	695	MSKCC	GRCh37	X	100615121	100615121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	84	533	0	ENST00000308731.7:c.794C>A	p.Pro265His	p.P265H	ENST00000308731	NM_000061.2	265	cCt/cAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242482	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCAAC	GAATTAAGAGAAGCAAC	AT			P-0039405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	134	486	2	ENST00000275493.2:c.2236_2252delinsAT	p.Glu746_Thr751delinsIle	p.E746_T751delinsI	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCAACa/ATa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	344	773	3	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0039427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	80	228	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	243	529	7	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112162834	112162834	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	148	370	0	ENST00000257430.4:c.1438C>T	p.Gln480Ter	p.Q480*	ENST00000257430	NM_000038.5	480	Caa/Taa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248608	10248608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	290	688	10	ENST00000340748.4:c.4145C>T	p.Ser1382Leu	p.S1382L	ENST00000340748		1382	tCg/tTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573544	48573544	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	132	268	0	ENST00000342988.3:c.128T>G	p.Leu43Trp	p.L43W	ENST00000342988	NM_005359.5	43	tTg/tGg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	47	365	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	58	174	0				ENST00000310581	NM_198253.2																																																																																
NKX2-1	7080	MSKCC	GRCh37	14	36987107	36987115	+	inframe_deletion	In_Frame_Del	DEL	GCGCTTCCT	GCGCTTCCT	-			P-0039438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	68	484	0	ENST00000354822.5:c.574_582del	p.Lys193_Arg195del	p.K193_R195del	ENST00000354822	NM_001079668.2	192	AGGAAGCGC/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	191	528	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	138	440	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716327	52716327	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	173	442	2	ENST00000322088.6:c.771G>C	p.Trp257Cys	p.W257C	ENST00000322088	NM_014225.5	257	tgG/tgC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952073	178952073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	19	273	1	ENST00000263967.3:c.3128T>C	p.Met1043Thr	p.M1043T	ENST00000263967	NM_006218.2	1043	aTg/aCg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31424569	31424585	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCGCAGGTCCTGGAAA	CGCGCAGGTCCTGGAAA	-			P-0039439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	102	497	0	ENST00000344624.3:c.3217-7_3226del		p.X1073_splice	ENST00000344624		1073																																																																															
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	39	245	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	174	585	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	19	423	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589663	67589663	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0039473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	34	272	0	ENST00000274335.5:c.1425+1G>T		p.X475_splice	ENST00000274335		475																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061593	38061622	+	inframe_deletion	In_Frame_Del	DEL	GGCCGCGTAGGGGCCCAGGCCATTCATGGA	GGCCGCGTAGGGGCCCAGGCCATTCATGGA	-			P-0039473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	126	387	0	ENST00000250448.2:c.367_396del	p.Ser123_Ala132del	p.S123_A132del	ENST00000250448	NM_004496.3	123	TCCATGAATGGCCTGGGCCCCTACGCGGCC/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	278	408	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0039476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	371	553	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217297	11217297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	206	712	0	ENST00000361445.4:c.4381G>A	p.Val1461Met	p.V1461M	ENST00000361445	NM_004958.3	1461	Gtg/Atg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	171	545	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	199	574	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78428516	78428516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	170	409	0	ENST00000370768.2:c.1283C>T	p.Thr428Ile	p.T428I	ENST00000370768	NM_003902.3	428	aCa/aTa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982360	201982360	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	267	782	1	ENST00000359651.3:c.739C>T	p.Arg247Ter	p.R247*	ENST00000359651		247	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	175	476	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	97	275	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316397	14316397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	198	442	0	ENST00000256196.4:c.208G>A	p.Ala70Thr	p.A70T	ENST00000256196		70	Gca/Aca																																																																														
CCND1	595	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	220	729	0	ENST00000227507.2:c.859C>T	p.Pro287Ser	p.P287S	ENST00000227507	NM_053056.2	287	Ccc/Tcc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939413	71939413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148394356		P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	285	749	1	ENST00000298229.2:c.268C>T	p.Arg90Cys	p.R90C	ENST00000298229	NM_001567.3	90	Cgc/Tgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	292	932	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948527	71948527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	218	816	1	ENST00000298229.2:c.3239G>A	p.Arg1080His	p.R1080H	ENST00000298229	NM_001567.3	1080	cGt/cAt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	95	825	7	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
RAD52	5893	MSKCC	GRCh37	12	1039231	1039231	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144832155		P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	169	437	0	ENST00000358495.3:c.266C>T	p.Thr89Met	p.T89M	ENST00000358495	NM_134424.2	89	aCg/aTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491390	18491390	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	103	261	1	ENST00000266497.5:c.1309del	p.Ile437TyrfsTer5	p.I437Yfs*5	ENST00000266497		435	Aaa/aa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244595	46244595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	179	523	0	ENST00000334344.6:c.2689G>A	p.Ala897Thr	p.A897T	ENST00000334344	NM_152641.2	897	Gca/Aca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	212	842	2	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	136	399	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	213	692	1	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99192851	99192851	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	139	363	1	ENST00000268035.6:c.45del	p.Leu16SerfsTer31	p.L16Sfs*31	ENST00000268035	NM_000875.3	14	tGg/tg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246037	41246037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	192	564	0	ENST00000357654.3:c.1511G>A	p.Arg504His	p.R504H	ENST00000357654	NM_007294.3	504	cGt/cAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	355	742	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448297	56448297	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2257205		P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	261	621	0	ENST00000407977.2:c.350G>A	p.Arg117His	p.R117H	ENST00000407977		117	cGc/cAc																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73774681	73774682	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	26	113	0	ENST00000254810.4:c.405_406delAG	p.Arg135SerfsTer12	p.R135Sfs*12	ENST00000254810	NM_005324.3	135	agAGct/agct																																																																														
YES1	7525	MSKCC	GRCh37	18	756622	756622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	188	446	0	ENST00000314574.4:c.206C>T	p.Thr69Met	p.T69M	ENST00000314574	NM_005433.3	69	aCg/aTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	219	831	6	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276310	15276310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	240	681	1	ENST00000263388.2:c.5684G>A	p.Arg1895His	p.R1895H	ENST00000263388	NM_000435.2	1895	cGc/cAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350824	15350824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148664288		P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	213	556	1	ENST00000263377.2:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000263377	NM_058243.2	1060	cGc/cAc																																																																														
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	206	691	9	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																														
ERF	2077	MSKCC	GRCh37	19	42752781	42752781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	216	800	0	ENST00000222329.4:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000222329	NM_006494.2	495	Gaa/Aaa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753650	42753650	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1053655		P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	251	807	0	ENST00000222329.4:c.614G>A	p.Arg205His	p.R205H	ENST00000222329	NM_006494.2	205	cGc/cAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42798218	42798218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	184	685	0	ENST00000575354.2:c.4172G>A	p.Arg1391His	p.R1391H	ENST00000575354	NM_015125.3	1391	cGc/cAc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867058	45867058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	199	657	0	ENST00000391945.4:c.1061C>T	p.Pro354Leu	p.P354L	ENST00000391945	NM_000400.3	354	cCg/cTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905173	50905173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41563714		P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	286	857	0	ENST00000440232.2:c.455C>T	p.Ala152Val	p.A152V	ENST00000440232	NM_002691.3	152	gCg/gTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906393	50906393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	229	843	0	ENST00000440232.2:c.1054C>T	p.Arg352Cys	p.R352C	ENST00000440232	NM_002691.3	352	Cgc/Tgc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630541	47630541	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	131	592	0	ENST00000233146.2:c.211G>T	p.Gly71Ter	p.G71*	ENST00000233146	NM_000251.2	71	Gga/Tga																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637455	47637468	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGAATGTGTTTT	AAGGAATGTGTTTT	-			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	159	455	0	ENST00000233146.2:c.590_603del	p.Lys197ThrfsTer30	p.K197Tfs*30	ENST00000233146	NM_000251.2	197	AAGGAATGTGTTTTa/a																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877391	40877391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	145	536	1	ENST00000373198.4:c.2305G>A	p.Val769Met	p.V769M	ENST00000373198	NM_133170.3	769	Gtg/Atg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	90	298	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	197	465	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	135	284	0	ENST00000274335.5:c.1727_1729delCGA	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																														
APC	324	MSKCC	GRCh37	5	112170666	112170666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	110	319	0	ENST00000257430.4:c.1762G>A	p.Val588Ile	p.V588I	ENST00000257430	NM_000038.5	588	Gta/Ata																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	161	838	2	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180055897	180055897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	38	669	2	ENST00000261937.6:c.1088del	p.Pro363ArgfsTer27	p.P363Rfs*27	ENST00000261937	NM_182925.4	363	cCg/cg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	212	827	0	ENST00000220592.5:c.1805_1806dup	p.Ala603ProfsTer93	p.A603Pfs*93	ENST00000220592	NM_012154.3	602	-/CC																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797231	135797231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	21	217	0	ENST00000298552.3:c.638T>C	p.Leu213Pro	p.L213P	ENST00000298552	NM_001162426.1	213	cTg/cCg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105609	11105609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	225	635	1	ENST00000344626.4:c.1525G>A	p.Ala509Thr	p.A509T	ENST00000344626	NM_003072.3	509	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	264	737	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	542	595	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781388	3781388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	53	793	0	ENST00000262367.5:c.4977C>A	p.Asp1659Glu	p.D1659E	ENST00000262367	NM_004380.2	1659	gaC/gaA																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610163	10610163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	118	744	0	ENST00000171111.5:c.547A>G	p.Asn183Asp	p.N183D	ENST00000171111	NM_203500.1	183	Aat/Gat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	17	399	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711875	89711875	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0039479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	27	376	0	ENST00000371953.3:c.493G>T	p.Gly165Ter	p.G165*	ENST00000371953	NM_000314.4	165	Gga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27098980	27099001	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTGTCCACAGCGGGATCAGGA	TCTGTCCACAGCGGGATCAGGA	-			P-0039479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	27	445	0	ENST00000324856.7:c.3407-8_3420del		p.X1136_splice	ENST00000324856	NM_006015.4	1136																																																																															
ARID5B	84159	MSKCC	GRCh37	10	63851165	63851165	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	54	723	0	ENST00000279873.7:c.1943del	p.Val648AlafsTer15	p.V648Afs*15	ENST00000279873	NM_032199.2	648	gTc/gc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821563	72821564	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0039497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	27	277	0	ENST00000268489.5:c.10611_10612del	p.Cys3539TrpfsTer31	p.C3539Wfs*31	ENST00000268489	NM_006885.3	3537	gcGCtc/gctc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791824	42791824	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	68	864	0	ENST00000575354.2:c.710G>A	p.Trp237Ter	p.W237*	ENST00000575354	NM_015125.3	237	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	770	754	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937504	32937504	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	314	817	0	ENST00000380152.3:c.8165del	p.Thr2722LysfsTer11	p.T2722Kfs*11	ENST00000380152		2722	aCa/aa																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858423	27858423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	286	655	0	ENST00000359303.2:c.148C>G	p.Arg50Gly	p.R50G	ENST00000359303	NM_003535.2	50	Cgt/Ggt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672884	30672884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	405	986	0	ENST00000376406.3:c.4076C>G	p.Ser1359Cys	p.S1359C	ENST00000376406	NM_014641.2	1359	tCt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100913	27100913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	74	540	0	ENST00000324856.7:c.4195C>T	p.Gln1399Ter	p.Q1399*	ENST00000324856	NM_006015.4	1399	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106570	27106571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0039502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	110	727	0	ENST00000324856.7:c.6182_6183dup	p.Val2062TrpfsTer74	p.V2062Wfs*74	ENST00000324856	NM_006015.4	2061	ttg/tTGtg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426955	49426955	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	52	654	0	ENST00000301067.7:c.11533C>T	p.Gln3845Ter	p.Q3845*	ENST00000301067	NM_003482.3	3845	Cag/Tag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43700189	43700189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	70	468	0	ENST00000382044.4:c.5698G>A	p.Gly1900Ser	p.G1900S	ENST00000382044	NM_001141980.1	1900	Ggt/Agt																																																																														
BLM	641	MSKCC	GRCh37	15	91337508	91337508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	83	399	0	ENST00000355112.3:c.3131A>G	p.Tyr1044Cys	p.Y1044C	ENST00000355112	NM_000057.2	1044	tAc/tGc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640008	3640008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202032197		P-0039502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	206	831	0	ENST00000294008.3:c.3631G>A	p.Glu1211Lys	p.E1211K	ENST00000294008	NM_032444.2	1211	Gaa/Aaa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641097	3641097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	251	874	0	ENST00000294008.3:c.2542G>A	p.Glu848Lys	p.E848K	ENST00000294008	NM_032444.2	848	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923384	9923384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	132	540	0	ENST00000330684.3:c.1903G>A	p.Ala635Thr	p.A635T	ENST00000330684	NM_001134407.1	635	Gcc/Acc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641043	23641043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	89	606	0	ENST00000261584.4:c.2432C>T	p.Pro811Leu	p.P811L	ENST00000261584	NM_024675.3	811	cCa/cTa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880926	134880926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	59	553	1	ENST00000398015.3:c.1489C>T	p.Arg497Trp	p.R497W	ENST00000398015	NM_004441.4	497	Cgg/Tgg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0039502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	753	671	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	92	454	0				ENST00000310581	NM_198253.2																																																																																
RBM10	8241	MSKCC	GRCh37	X	47038858	47038858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	28	417	0	ENST00000329236.7:c.634C>T	p.Gln212Ter	p.Q212*	ENST00000329236	NM_001204466.1	212	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	86	733	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	10	60	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067192	37067192	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201673334		P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	121	407	1	ENST00000231790.2:c.1103C>T	p.Ser368Leu	p.S368L	ENST00000231790	NM_000249.3	368	tCg/tTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100133	30100133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	159	823	0	ENST00000331968.5:c.1487C>T	p.Thr496Met	p.T496M	ENST00000331968	NM_002742.2	496	aCg/aTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141559	11141559	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	507	802	0	ENST00000344626.4:c.3536A>T	p.Asn1179Ile	p.N1179I	ENST00000344626	NM_003072.3	1179	aAt/aTt																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805422	46805422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	129	940	0	ENST00000290295.7:c.534G>A	p.Trp178Ter	p.W178*	ENST00000290295	NM_006361.5	178	tgG/tgA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427054	49427054	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	158	644	0	ENST00000301067.7:c.11434C>T	p.Gln3812Ter	p.Q3812*	ENST00000301067	NM_003482.3	3812	Cag/Tag																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839778	27839778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	171	672	0	ENST00000328488.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000328488	NM_003533.2	106	Gag/Cag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10286250	10286250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1290	224	750	2	ENST00000340748.4:c.566C>T	p.Ser189Leu	p.S189L	ENST00000340748		189	tCg/tTg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075574	8075574	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	70	446	1	ENST00000377482.5:c.106A>T	p.Ser36Cys	p.S36C	ENST00000377482	NM_018948.3	36	Agt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426616	49426616	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	113	710	0	ENST00000301067.7:c.11872C>T	p.Gln3958Ter	p.Q3958*	ENST00000301067	NM_003482.3	3958	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444478	49444478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	97	850	0	ENST00000301067.7:c.2893G>T	p.Gly965Trp	p.G965W	ENST00000301067	NM_003482.3	965	Ggg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56490378	56490378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	84	515	0	ENST00000267101.3:c.2147G>A	p.Gly716Asp	p.G716D	ENST00000267101	NM_001982.3	716	gGc/gAc																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805580	46805580	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	120	1088	0	ENST00000290295.7:c.376G>C	p.Glu126Gln	p.E126Q	ENST00000290295	NM_006361.5	126	Gag/Cag																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39576644	39576644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	39	383	0	ENST00000262039.4:c.934G>A	p.Glu312Lys	p.E312K	ENST00000262039	NM_002647.2	312	Gaa/Aaa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10257145	10257145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	103	645	0	ENST00000340748.4:c.2728G>T	p.Val910Phe	p.V910F	ENST00000340748		910	Gtc/Ttc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71008437	71008437	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	89	385	0	ENST00000318789.4:c.1995A>T	p.Arg665Ser	p.R665S	ENST00000318789	NM_032682.5	665	agA/agT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445019	89445019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	206	496	0	ENST00000336596.2:c.1339C>T	p.Arg447Trp	p.R447W	ENST00000336596	NM_005233.5	447	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486188	8486188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	100	499	0	ENST00000356435.5:c.2629G>T	p.Glu877Ter	p.E877*	ENST00000356435		877	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0039510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	117	466	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974770	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGT			P-0039510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	33	294	0	ENST00000304494.5:c.52_57dup	p.Thr18_Ala19dup	p.T18_A19dup	ENST00000304494	NM_000077.4	18	-/ACGGCC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974770	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGT			P-0039510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	33	294	0	ENST00000304494.5:c.52_57dup	p.Thr18_Ala19dup	p.T18_A19dup	ENST00000304494	NM_000077.4	18	-/ACGGCC																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435311	56435311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	138	658	1	ENST00000407977.2:c.1826G>A	p.Arg609Gln	p.R609Q	ENST00000407977		609	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0039510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	169	886	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713702	30713721	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGGGAGGACCTGCGCAA	AGCTGGGAGGACCTGCGCAA	-			P-0039510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	105	601	0	ENST00000359013.4:c.1102_1121del	p.Ser368AlafsTer15	p.S368Afs*15	ENST00000359013	NM_001024847.2	368	AGCTGGGAGGACCTGCGCAAg/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	113	414	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	161	433	0				ENST00000310581	NM_198253.2																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44935940	44935940	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0039512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	38	267	0	ENST00000377967.4:c.2703-2A>G		p.X901_splice	ENST00000377967	NM_021140.2	901																																																																															
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0039512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	160	879	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
SDHA	6389	MSKCC	GRCh37	5	233687	233687	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200526913		P-0039512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	20	356	0	ENST00000264932.6:c.991G>A	p.Ala331Thr	p.A331T	ENST00000264932	NM_004168.2	331	Gcc/Acc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123196796	123196796	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	114	540	0	ENST00000218089.9:c.1687del	p.Ile563SerfsTer13	p.I563Sfs*13	ENST00000218089	NM_001042749.1	561	acA/ac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807895	3807895	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	110	535	0	ENST00000262367.5:c.3524A>G	p.Tyr1175Cys	p.Y1175C	ENST00000262367	NM_004380.2	1175	tAt/tGt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934525	9934525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	21	472	0	ENST00000330684.3:c.1630G>A	p.Val544Ile	p.V544I	ENST00000330684	NM_001134407.1	544	Gtc/Atc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	200	380	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
TP63	8626	MSKCC	GRCh37	3	189612062	189612062	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142981128		P-0001507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	171	456	0	ENST00000264731.3:c.1814G>A	p.Arg605Gln	p.R605Q	ENST00000264731	NM_003722.4	605	cGg/cAg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099796	157099796	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	96	229	0	ENST00000346085.5:c.733G>C	p.Gly245Arg	p.G245R	ENST00000346085	NM_020732.3	245	Ggc/Cgc																																																																														
CDH1	999	MSKCC	GRCh37	16	68862189	68862205	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AGGCGGAGAAGAGGACC	AGGCGGAGAAGAGGACC	-			P-0001507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	91	356	0	ENST00000261769.5:c.2280_2295+1del		p.GGGEEDQ759fs	ENST00000261769	NM_004360.3	759	ggAGGCGGAGAAGAGGACCag/ggag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431394	121431394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002273-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	110	278	0	ENST00000257555.6:c.598C>T	p.Arg200Trp	p.R200W	ENST00000257555		200	Cgg/Tgg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680740	88680740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002273-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	81	449	0	ENST00000360948.2:c.517C>G	p.Leu173Val	p.L173V	ENST00000360948	NM_001012338.2	173	Ctc/Gtc																																																																														
ATM	472	MSKCC	GRCh37	11	108123639	108123639	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0002273-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	77	285	0	ENST00000278616.4:c.1898+1del		p.C633fs	ENST00000278616	NM_000051.3	633	tGt/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033283-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			353	299	616	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61729431	61729431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033283-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			443	83	376	0	ENST00000401558.2:c.316G>A	p.Val106Ile	p.V106I	ENST00000401558	NM_003400.3	106	Gtt/Att																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118354974	118354974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	44	316	0	ENST00000534358.1:c.4163G>T	p.Ser1388Ile	p.S1388I	ENST00000534358	NM_005933.3	1388	aGt/aTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	19	183	1				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652198	36652199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	38	526	0	ENST00000244741.5:c.322dup	p.Glu108GlyfsTer21	p.E108Gfs*21	ENST00000244741	NM_000389.4	107	gag/gaGg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539091	187539092	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0039109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	38	378	0	ENST00000441802.2:c.8648dup	p.Tyr2883Ter	p.Y2883*	ENST00000441802	NM_005245.3	2883	tac/taAc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224447	123224448	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATG			P-0039109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	34	213	0	ENST00000218089.9:c.3300_3301insCATG	p.Ser1101HisfsTer36	p.S1101Hfs*36	ENST00000218089	NM_001042749.1	1100	-/CATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	31	463	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	83	644	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0039272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	55	542	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0039272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	32	278	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577579	7577579	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	54	630	0	ENST00000269305.4:c.702C>G	p.Tyr234Ter	p.Y234*	ENST00000269305	NM_001126112.2	234	taC/taG																																																																														
EP300	2033	MSKCC	GRCh37	22	41489040	41489040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	80	566	0	ENST00000263253.7:c.32C>T	p.Pro11Leu	p.P11L	ENST00000263253	NM_001429.3	11	cCt/cTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16203019	16203019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	79	512	22	ENST00000375759.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000375759	NM_015001.2	243	Cgg/Tgg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248011	59248011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	139	493	0	ENST00000371222.2:c.732del	p.Ile245SerfsTer16	p.I245Sfs*16	ENST00000371222	NM_002228.3	244	ccC/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577056	7577060	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCC	CTCCC	-			P-0039273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	159	721	0	ENST00000269305.4:c.878_882del	p.Gly293AlafsTer11	p.G293Afs*11	ENST00000269305	NM_001126112.2	293	gGGGAG/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7577067	7577067	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	154	723	0	ENST00000269305.4:c.871A>C	p.Lys291Gln	p.K291Q	ENST00000269305	NM_001126112.2	291	Aag/Cag																																																																														
CD79B	974	MSKCC	GRCh37	17	62006605	62006605	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	214	607	0	ENST00000392795.3:c.674A>C	p.Glu225Ala	p.E225A	ENST00000392795	NM_001039933.1	225	gAg/gCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	51	477	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89845356	89845356	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	166	811	0	ENST00000389301.3:c.1771C>G	p.Arg591Gly	p.R591G	ENST00000389301	NM_000135.2	591	Cga/Gga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960140	134960140	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0039278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	86	571	0	ENST00000398015.3:c.2496+1G>T		p.X832_splice	ENST00000398015	NM_004441.4	832																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31437397	31437397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	111	659	0	ENST00000344624.3:c.2891A>G	p.His964Arg	p.H964R	ENST00000344624		964	cAc/cGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039906	47039906	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	136	729	0	ENST00000329236.7:c.1014+1G>A		p.X338_splice	ENST00000329236	NM_001204466.1	338																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0039279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	77	645	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	85	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	108	289	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161222	56161222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	92	411	1	ENST00000399503.3:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000399503	NM_005921.1	364	cGg/cAg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	79	445	0	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	272	637	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65323365	65323365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	116	480	0	ENST00000342505.4:c.1432A>G	p.Thr478Ala	p.T478A	ENST00000342505	NM_002227.2	478	Acc/Gcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	100	351	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	138	649	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201874	152201874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	67	381	1	ENST00000206249.3:c.728G>A	p.Arg243His	p.R243H	ENST00000206249	NM_000125.3	243	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	90	515	1	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	142	550	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	61	655	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966688	36966688	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137870876		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	88	437	2	ENST00000358127.4:c.638C>T	p.Ser213Leu	p.S213L	ENST00000358127	NM_001280556.1	213	tCg/tTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	40	265	0	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211097	55211097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	100	471	0	ENST00000275493.2:c.340G>A	p.Glu114Lys	p.E114K	ENST00000275493	NM_005228.3	114	Gaa/Aaa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	125	657	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
CASP8	841	MSKCC	GRCh37	2	202141631	202141631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	47	391	0	ENST00000358485.4:c.919C>T	p.Arg307Trp	p.R307W	ENST00000358485	NM_001080125.1	307	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578245	7578245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	139	554	0	ENST00000269305.4:c.604C>T	p.Arg202Cys	p.R202C	ENST00000269305	NM_001126112.2	202	Cgt/Tgt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778603	3778603	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147448293		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	113	489	0	ENST00000262367.5:c.6445G>A	p.Val2149Met	p.V2149M	ENST00000262367	NM_004380.2	2149	Gtg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822585	72822586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	77	456	0	ENST00000268489.5:c.9589dupC	p.Gln3197ProfsTer42	p.Q3197Pfs*42	ENST00000268489	NM_006885.3	3197	cag/cCag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	144	578	1	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	116	402	3	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	86	423	4	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
ATRX	546	MSKCC	GRCh37	X	76939673	76939674	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	26	320	0	ENST00000373344.5:c.1074dupA	p.Leu359ThrfsTer3	p.L359Tfs*3	ENST00000373344	NM_000489.3	358	-/A																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	105	449	2	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81990331	81990331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	132	448	0	ENST00000359376.3:c.3602G>A	p.Arg1201His	p.R1201H	ENST00000359376	NM_002661.3	1201	cGc/cAc																																																																														
B2M	567	MSKCC	GRCh37	15	45007901	45007901	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	59	288	0	ENST00000558401.1:c.346+2T>C		p.X116_splice	ENST00000558401	NM_004048.2	116																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371942	55371942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	93	353	1	ENST00000297316.4:c.632C>T	p.Ala211Val	p.A211V	ENST00000297316	NM_022454.3	211	gCg/gTg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885467	111885467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	90	507	0	ENST00000341259.2:c.1244G>A	p.Arg415His	p.R415H	ENST00000341259	NM_005475.2	415	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637121	176637122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	112	482	0	ENST00000439151.2:c.1727dup	p.Asn576LysfsTer8	p.N576Kfs*8	ENST00000439151	NM_022455.4	574	gga/ggAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	91	364	4	ENST00000264010.4:c.950_951delCA	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435597	110435597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	99	413	0	ENST00000375856.3:c.2804C>T	p.Ala935Val	p.A935V	ENST00000375856	NM_003749.2	935	gCg/gTg																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858279	27858279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	112	509	0	ENST00000359303.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000359303	NM_003535.2	98	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829454	72829454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	103	515	0	ENST00000268489.5:c.7127C>T	p.Thr2376Met	p.T2376M	ENST00000268489	NM_006885.3	2376	aCg/aTg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118954	3118954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	144	650	0	ENST00000078429.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000078429	NM_002067.2	213	cGg/cAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411416	63411416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	123	294	0	ENST00000330258.3:c.1751G>A	p.Arg584His	p.R584H	ENST00000330258	NM_152424.3	584	cGt/cAt																																																																														
STK40	83931	MSKCC	GRCh37	1	36821030	36821030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	110	455	0	ENST00000373129.3:c.347G>A	p.Arg116His	p.R116H	ENST00000373129	NM_032017.1	116	cGc/cAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942125	81942125	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	125	552	0	ENST00000359376.3:c.1667del	p.Gly556AlafsTer42	p.G556Afs*42	ENST00000359376	NM_002661.3	554	acG/ac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827892	40827892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	95	417	0	ENST00000373198.4:c.2536G>A	p.Val846Ile	p.V846I	ENST00000373198	NM_133170.3	846	Gtc/Atc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	87	433	4	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	49	559	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39609394	39609394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	79	329	0	ENST00000262039.4:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000262039	NM_002647.2	566	Cgt/Tgt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137075	64137075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	64	498	0	ENST00000334205.4:c.1586G>A	p.Arg529His	p.R529H	ENST00000334205	NM_003942.2	529	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	120	702	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84391358	84391358	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	48	472	0	ENST00000321945.7:c.474del	p.Gly159AspfsTer8	p.G159Dfs*8	ENST00000321945	NM_139076.2	158	aaA/aa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353974	15353974	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	35	185	0	ENST00000263377.2:c.2906A>T	p.Gln969Leu	p.Q969L	ENST00000263377	NM_058243.2	969	cAg/cTg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45651306	45651307	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	100	550	0	ENST00000407780.3:c.718_719delGA	p.Asp240GlnfsTer81	p.D240Qfs*81	ENST00000407780	NM_001283052.1	240	GAc/c																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808391	1808391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17882190		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	110	765	2	ENST00000260795.2:c.2149G>A	p.Ala717Thr	p.A717T	ENST00000260795		717	Gcc/Acc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906394	50906394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	67	598	0	ENST00000440232.2:c.1055G>A	p.Arg352His	p.R352H	ENST00000440232	NM_002691.3	352	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56434942	56434942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	127	616	1	ENST00000407977.2:c.2195G>A	p.Arg732His	p.R732H	ENST00000407977		732	cGc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317189	11317189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	135	472	0	ENST00000361445.4:c.305C>T	p.Thr102Ile	p.T102I	ENST00000361445	NM_004958.3	102	aCc/aTc																																																																														
CCND2	894	MSKCC	GRCh37	12	4398043	4398043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	121	486	0	ENST00000261254.3:c.607G>A	p.Ala203Thr	p.A203T	ENST00000261254	NM_001759.3	203	Gca/Aca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187527348	187527348	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184300563		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	57	414	0	ENST00000441802.2:c.10226C>T	p.Thr3409Met	p.T3409M	ENST00000441802	NM_005245.3	3409	aCg/aTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	117	537	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																														
AXIN1	8312	MSKCC	GRCh37	16	338208	338208	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	135	659	0	ENST00000262320.3:c.2503del	p.Val835TrpfsTer103	p.V835Wfs*103	ENST00000262320	NM_003502.3	835	Gtg/tg																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108330	8108330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	106	570	0	ENST00000585124.1:c.894G>A	p.Met298Ile	p.M298I	ENST00000585124	NM_004217.3	298	atG/atA																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918709	50918709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	137	447	0	ENST00000440232.2:c.2579C>T	p.Ala860Val	p.A860V	ENST00000440232	NM_002691.3	860	gCg/gTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	422242	422242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	105	465	0	ENST00000399788.2:c.3016G>A	p.Ala1006Thr	p.A1006T	ENST00000399788	NM_001042603.1	1006	Gct/Act																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654615	67654615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	129	410	1	ENST00000264010.4:c.1102C>T	p.Arg368Cys	p.R368C	ENST00000264010	NM_006565.3	368	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094450	27094450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	113	489	0	ENST00000324856.7:c.3158G>A	p.Arg1053His	p.R1053H	ENST00000324856	NM_006015.4	1053	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224183	36224183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	57	569	1	ENST00000222270.7:c.6733G>A	p.Val2245Met	p.V2245M	ENST00000222270	NM_014727.1	2245	Gtg/Atg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933047	39933047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	124	372	0	ENST00000378444.4:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000378444	NM_001123385.1	518	Gaa/Aaa																																																																														
HRAS	3265	MSKCC	GRCh37	11	533536	533536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	137	650	0	ENST00000311189.7:c.367C>T	p.Arg123Cys	p.R123C	ENST00000311189		123	Cgc/Tgc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798439	32798439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	163	661	2	ENST00000374899.4:c.1417G>A	p.Val473Ile	p.V473I	ENST00000374899	NM_018833.2	473	Gtc/Atc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335545	73335546	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	100	303	0	ENST00000377767.4:c.2625dup	p.Glu876Ter	p.E876*	ENST00000377767	NM_014953.3	875	-/T																																																																														
SMO	6608	MSKCC	GRCh37	7	128851985	128851985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	141	616	0	ENST00000249373.3:c.2057C>T	p.Ala686Val	p.A686V	ENST00000249373	NM_005631.4	686	gCg/gTg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14022037	14022037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	107	469	0	ENST00000311895.7:c.737C>T	p.Ser246Leu	p.S246L	ENST00000311895	NM_005236.2	246	tCg/tTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939788	71939788	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	67	568	0	ENST00000298229.2:c.419del	p.Pro140ArgfsTer39	p.P140Rfs*39	ENST00000298229	NM_001567.3	139	Ccc/cc																																																																														
RB1	5925	MSKCC	GRCh37	13	48941695	48941696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	48	263	0	ENST00000267163.4:c.1010dup	p.Leu337PhefsTer4	p.L337Ffs*4	ENST00000267163	NM_000321.2	335	-/T																																																																														
APC	324	MSKCC	GRCh37	5	112137003	112137003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	91	365	0	ENST00000257430.4:c.757G>A	p.Gly253Ser	p.G253S	ENST00000257430	NM_000038.5	253	Ggc/Agc																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538882	23538882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	107	431	0	ENST00000380871.4:c.557C>T	p.Ser186Leu	p.S186L	ENST00000380871	NM_006167.3	186	tCg/tTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254932	16254932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138206879		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	85	457	0	ENST00000375759.3:c.2197C>T	p.Arg733Cys	p.R733C	ENST00000375759	NM_015001.2	733	Cgt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256529	16256529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	163	547	1	ENST00000375759.3:c.3794G>A	p.Arg1265Gln	p.R1265Q	ENST00000375759	NM_015001.2	1265	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056334	27056334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	97	346	0	ENST00000324856.7:c.1330G>A	p.Gly444Ser	p.G444S	ENST00000324856	NM_006015.4	444	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100865	27100865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	124	481	0	ENST00000324856.7:c.4147C>T	p.Arg1383Trp	p.R1383W	ENST00000324856	NM_006015.4	1383	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	109	548	0	ENST00000324856.7:c.4550C>T	p.Ala1517Val	p.A1517V	ENST00000324856	NM_006015.4	1517	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105950	27105950	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	108	463	1	ENST00000324856.7:c.5561A>T	p.His1854Leu	p.H1854L	ENST00000324856	NM_006015.4	1854	cAt/cTt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797105	45797105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	161	649	0	ENST00000372115.3:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000372115	NM_001048171.1	423	cGg/cAg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46740250	46740250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	89	406	0	ENST00000371975.4:c.1730G>A	p.Gly577Asp	p.G577D	ENST00000371975	NM_003579.3	577	gGc/gAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462160	120462160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	108	493	0	ENST00000256646.2:c.5556G>T	p.Glu1852Asp	p.E1852D	ENST00000256646	NM_024408.3	1852	gaG/gaT																																																																														
WT1	7490	MSKCC	GRCh37	11	32421514	32421514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	87	468	0	ENST00000332351.3:c.1078G>T	p.Gly360Cys	p.G360C	ENST00000332351	NM_024426.4	360	Ggt/Tgt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64135721	64135721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	98	589	1	ENST00000334205.4:c.1189G>A	p.Ala397Thr	p.A397T	ENST00000334205	NM_003942.2	397	Gct/Act																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941507	71941507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	80	553	1	ENST00000298229.2:c.1192G>A	p.Ala398Thr	p.A398T	ENST00000298229	NM_001567.3	398	Gcc/Acc																																																																														
ATM	472	MSKCC	GRCh37	11	108151837	108151837	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	110	359	0	ENST00000278616.4:c.3518T>C	p.Leu1173Ser	p.L1173S	ENST00000278616	NM_000051.3	1173	tTg/tCg																																																																														
RAD52	5893	MSKCC	GRCh37	12	1023695	1023695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199638457		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	87	371	1	ENST00000358495.3:c.869C>T	p.Ala290Val	p.A290V	ENST00000358495	NM_134424.2	290	gCg/gTg																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945076	31945076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	105	557	1	ENST00000340398.3:c.25C>T	p.Arg9Cys	p.R9C	ENST00000340398	NM_001013699.2	9	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436108	49436108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	51	333	0	ENST00000301067.7:c.5873G>A	p.Arg1958His	p.R1958H	ENST00000301067	NM_003482.3	1958	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445799	49445799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	145	833	1	ENST00000301067.7:c.1667C>T	p.Pro556Leu	p.P556L	ENST00000301067	NM_003482.3	556	cCg/cTg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134359	41134359	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	122	479	0	ENST00000379561.5:c.1269del	p.Lys423AsnfsTer9	p.K423Nfs*9	ENST00000379561	NM_002015.3	423	aaA/aa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435150	110435150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	108	524	0	ENST00000375856.3:c.3251C>T	p.Pro1084Leu	p.P1084L	ENST00000375856	NM_003749.2	1084	cCg/cTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436597	110436597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	151	673	0	ENST00000375856.3:c.1804C>T	p.Arg602Trp	p.R602W	ENST00000375856	NM_003749.2	602	Cgg/Tgg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437706	110437706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	40	600	0	ENST00000375856.3:c.695A>G	p.Asn232Ser	p.N232S	ENST00000375856	NM_003749.2	232	aAc/aGc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222245	2222245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	139	658	0	ENST00000326181.6:c.529G>A	p.Val177Met	p.V177M	ENST00000326181	NM_032271.2	177	Gtg/Atg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639453	3639453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	125	645	1	ENST00000294008.3:c.4186G>A	p.Gly1396Arg	p.G1396R	ENST00000294008	NM_032444.2	1396	Gga/Aga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832868	3832868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	111	470	0	ENST00000262367.5:c.1390C>A	p.Gln464Lys	p.Q464K	ENST00000262367	NM_004380.2	464	Caa/Aaa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041882	14041882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	86	323	0	ENST00000311895.7:c.2429C>T	p.Ala810Val	p.A810V	ENST00000311895	NM_005236.2	810	gCg/gTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984481	72984481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147374923		P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	138	602	3	ENST00000268489.5:c.3103G>A	p.Gly1035Ser	p.G1035S	ENST00000268489	NM_006885.3	1035	Ggc/Agc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216160	7216161	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TG	TG	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	76	336	0	ENST00000380728.2:c.901-3_901-2del		p.X301_splice	ENST00000380728		301																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011123	12011123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	47	299	0	ENST00000353533.5:c.530G>A	p.Cys177Tyr	p.C177Y	ENST00000353533	NM_003010.3	177	tGt/tAt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17127393	17127393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	126	570	0	ENST00000285071.4:c.461A>G	p.His154Arg	p.H154R	ENST00000285071	NM_144997.5	154	cAc/cGc																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33430295	33430295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	147	637	0	ENST00000335858.7:c.380G>T	p.Arg127Leu	p.R127L	ENST00000335858	NM_133629.2	127	cGg/cTg																																																																														
RARA	5914	MSKCC	GRCh37	17	38508272	38508272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	134	569	0	ENST00000254066.5:c.580G>A	p.Ala194Thr	p.A194T	ENST00000254066	NM_000964.3	194	Gcg/Acg																																																																														
RARA	5914	MSKCC	GRCh37	17	38511517	38511517	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	104	423	0	ENST00000254066.5:c.1015C>A	p.Arg339Ser	p.R339S	ENST00000254066	NM_000964.3	339	Cgc/Agc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492830	56492830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	110	439	0	ENST00000407977.2:c.109G>A	p.Glu37Lys	p.E37K	ENST00000407977		37	Gag/Aag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2164192	2164192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	70	320	0	ENST00000398665.3:c.9G>T	p.Glu3Asp	p.E3D	ENST00000398665	NM_032482.2	3	gaG/gaT																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222898	5222898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	113	490	0	ENST00000357368.4:c.2905G>A	p.Val969Met	p.V969M	ENST00000357368	NM_002850.3	969	Gtg/Atg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243936	5243937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	95	507	0	ENST00000357368.4:c.1545dup	p.Ile516HisfsTer111	p.I516Hfs*111	ENST00000357368	NM_002850.3	515	-/C																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244191	5244191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	133	544	1	ENST00000357368.4:c.1291C>T	p.Arg431Trp	p.R431W	ENST00000357368	NM_002850.3	431	Cgg/Tgg																																																																														
INSR	3643	MSKCC	GRCh37	19	7172389	7172389	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	126	473	0	ENST00000302850.5:c.1180T>C	p.Tyr394His	p.Y394H	ENST00000302850	NM_000208.2	394	Tat/Cat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098410	11098410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	111	440	2	ENST00000344626.4:c.928C>T	p.Arg310Cys	p.R310C	ENST00000344626	NM_003072.3	310	Cgc/Tgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11101866	11101866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	132	630	1	ENST00000344626.4:c.1286C>T	p.Ala429Val	p.A429V	ENST00000344626	NM_003072.3	429	gCg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11107218	11107218	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	152	601	0	ENST00000344626.4:c.1810G>A	p.Glu604Lys	p.E604K	ENST00000344626	NM_003072.3	604	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288807	15288807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	49	181	0	ENST00000263388.2:c.3932C>T	p.Pro1311Leu	p.P1311L	ENST00000263388	NM_000435.2	1311	cCg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210770	36210770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	233	678	0	ENST00000222270.7:c.521C>A	p.Pro174Gln	p.P174Q	ENST00000222270	NM_014727.1	174	cCa/cAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227663	36227663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	69	619	0	ENST00000222270.7:c.7232G>A	p.Gly2411Asp	p.G2411D	ENST00000222270	NM_014727.1	2411	gGc/gAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229342	36229342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	179	568	0	ENST00000222270.7:c.8032C>T	p.Arg2678Cys	p.R2678C	ENST00000222270	NM_014727.1	2678	Cgc/Tgc																																																																														
ERF	2077	MSKCC	GRCh37	19	42752694	42752694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	189	620	0	ENST00000222329.4:c.1570C>G	p.Pro524Ala	p.P524A	ENST00000222329	NM_006494.2	524	Ccc/Gcc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464521	25464521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	147	607	0	ENST00000264709.3:c.1992G>T	p.Glu664Asp	p.E664D	ENST00000264709	NM_175629.2	664	gaG/gaT																																																																														
MSH2	4436	MSKCC	GRCh37	2	47657019	47657019	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	80	365	0	ENST00000233146.2:c.1215C>G	p.Tyr405Ter	p.Y405*	ENST00000233146	NM_000251.2	405	taC/taG																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170738	99170738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	83	328	0	ENST00000074304.5:c.1367G>A	p.Arg456Gln	p.R456Q	ENST00000074304	NM_001134224.1	456	cGg/cAg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021673	31021673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	148	470	2	ENST00000375687.4:c.1672G>A	p.Glu558Lys	p.E558K	ENST00000375687	NM_015338.5	558	Gaa/Aaa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62317172	62317172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	139	687	1	ENST00000508582.2:c.1367G>A	p.Arg456Gln	p.R456Q	ENST00000508582		456	cGg/cAg																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656873	45656873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	126	546	1	ENST00000407780.3:c.283G>A	p.Asp95Asn	p.D95N	ENST00000407780	NM_001283052.1	95	Gac/Aac																																																																														
EP300	2033	MSKCC	GRCh37	22	41553308	41553308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	67	512	0	ENST00000263253.7:c.3397C>T	p.Arg1133Trp	p.R1133W	ENST00000263253	NM_001429.3	1133	Cgg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41565553	41565553	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	98	386	0	ENST00000263253.7:c.4219A>G	p.Lys1407Glu	p.K1407E	ENST00000263253	NM_001429.3	1407	Aaa/Gaa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438551	52438551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	136	488	0	ENST00000460680.1:c.1168C>A	p.Pro390Thr	p.P390T	ENST00000460680	NM_004656.3	390	Cca/Aca																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427784	72427784	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	41	302	0	ENST00000477973.2:c.704del	p.Arg236GlyfsTer2	p.R236Gfs*2	ENST00000477973	NM_012234.5	236	Cgg/gg																																																																														
ATR	545	MSKCC	GRCh37	3	142223982	142223982	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	39	432	0	ENST00000350721.4:c.5195A>G	p.Gln1732Arg	p.Q1732R	ENST00000350721	NM_001184.3	1732	cAg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948102	178948102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	58	225	0	ENST00000263967.3:c.2874G>T	p.Gln958His	p.Q958H	ENST00000263967	NM_006218.2	958	caG/caT																																																																														
KIT	3815	MSKCC	GRCh37	4	55604674	55604674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	112	420	0	ENST00000288135.5:c.2882G>A	p.Gly961Asp	p.G961D	ENST00000288135	NM_000222.2	961	gGc/gAc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955970	55955970	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	96	368	0	ENST00000263923.4:c.3193-1G>A		p.X1065_splice	ENST00000263923	NM_002253.2	1065																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249412	153249412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	91	494	0	ENST00000281708.4:c.1366A>G	p.Thr456Ala	p.T456A	ENST00000281708	NM_033632.3	456	Acc/Gcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524677	187524677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	166	641	1	ENST00000441802.2:c.11003G>A	p.Arg3668Gln	p.R3668Q	ENST00000441802	NM_005245.3	3668	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112170712	112170712	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	104	467	1	ENST00000257430.4:c.1808A>G	p.Lys603Arg	p.K603R	ENST00000257430	NM_000038.5	603	aAa/aGa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721025	176721025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	92	508	0	ENST00000439151.2:c.6656G>A	p.Arg2219His	p.R2219H	ENST00000439151	NM_022455.4	2219	cGt/cAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120433	94120433	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	70	360	0	ENST00000369303.4:c.618G>A	p.Trp206Ter	p.W206*	ENST00000369303	NM_004440.3	206	tgG/tgA																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129475	152129475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	24	280	0	ENST00000206249.3:c.428A>G	p.Glu143Gly	p.E143G	ENST00000206249	NM_000125.3	143	gAg/gGg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962304	2962304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	147	616	0	ENST00000396946.4:c.2233G>T	p.Gly745Cys	p.G745C	ENST00000396946	NM_032415.4	745	Ggc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221845	55221845	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	135	626	0	ENST00000275493.2:c.889C>T	p.Arg297Cys	p.R297C	ENST00000275493	NM_005228.3	297	Cgt/Tgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878272	151878272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	119	495	1	ENST00000262189.6:c.6673C>T	p.Pro2225Ser	p.P2225S	ENST00000262189	NM_170606.2	2225	Cca/Tca																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371924	55371924	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	31	336	0	ENST00000297316.4:c.614A>C	p.Asp205Ala	p.D205A	ENST00000297316	NM_022454.3	205	gAc/gCc																																																																														
LYN	4067	MSKCC	GRCh37	8	56912001	56912001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	130	464	2	ENST00000519728.1:c.1229C>T	p.Thr410Met	p.T410M	ENST00000519728	NM_002350.3	410	aCg/aTg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80537076	80537076	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	107	372	0	ENST00000286548.4:c.321+1G>A		p.X107_splice	ENST00000286548	NM_002072.3	107																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53245029	53245029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	140	294	0	ENST00000375401.3:c.911C>A	p.Pro304His	p.P304H	ENST00000375401	NM_004187.3	304	cCc/cAc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191765	123191765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	73	193	0	ENST00000218089.9:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000218089	NM_001042749.1	452	Gga/Aga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65303634	65303634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	78	710	0	ENST00000342505.4:c.3121C>T	p.Arg1041Trp	p.R1041W	ENST00000342505	NM_002227.2	1041	Cgg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553477	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	56	673	0	ENST00000358273.4:c.2026A>C	p.Thr676Pro	p.T676P	ENST00000358273	NM_001042492.2	676	Acc/Ccc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279574	18279574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	184	815	0	ENST00000222254.8:c.1847A>G	p.His616Arg	p.H616R	ENST00000222254	NM_005027.3	616	cAc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	111	592	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	90	525	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589875	212589875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	38	587	0	ENST00000342788.4:c.667G>A	p.Gly223Arg	p.G223R	ENST00000342788	NM_005235.2	223	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577555	7577555	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	94	618	1	ENST00000269305.4:c.726C>A	p.Cys242Ter	p.C242*	ENST00000269305	NM_001126112.2	242	tgC/tgA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100389	27100389	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	72	526	1	ENST00000324856.7:c.4101G>T	p.Gln1367His	p.Q1367H	ENST00000324856	NM_006015.4	1367	caG/caT																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874164	155874164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	60	699	2	ENST00000368323.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000368323	NM_006912.5	123	Cgt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581273	48581273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	99	545	0	ENST00000342988.3:c.577del	p.Glu193ArgfsTer9	p.E193Rfs*9	ENST00000342988	NM_005359.5	193	Gag/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	23	501	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988447	36988456	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGCGGAG	GCCAGCGGAG	-			P-0039368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	37	701	0	ENST00000354822.5:c.197_206del	p.Ala66GlyfsTer32	p.A66Gfs*32	ENST00000354822	NM_001079668.2	66	gCTCCGCTGGCg/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0039369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	194	798	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	152	713	0	ENST00000322088.6:c.767C>A	p.Ser256Tyr	p.S256Y	ENST00000322088	NM_014225.5	256	tCc/tAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419951	41419951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	148	677	0	ENST00000373198.4:c.370G>A	p.Val124Met	p.V124M	ENST00000373198	NM_133170.3	124	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577095	7577096	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TTT			P-0039369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	99	840	0	ENST00000269305.4:c.842_843insAAA	p.Asp281delinsGluAsn	p.D281delinsEN	ENST00000269305	NM_001126112.2	281	gac/gaAAAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507414	8507414	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	39	375	0	ENST00000356435.5:c.1564T>A	p.Phe522Ile	p.F522I	ENST00000356435		522	Ttc/Atc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440925	52440925	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0039370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	321	562	0	ENST00000460680.1:c.581-2A>G		p.X194_splice	ENST00000460680	NM_004656.3	194																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30105554	30105554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	195	651	0	ENST00000331968.5:c.1132G>T	p.Asp378Tyr	p.D378Y	ENST00000331968	NM_002742.2	378	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	113	509	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	117	338	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	59	568	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	251	679	0	ENST00000269305.4:c.761T>A	p.Ile254Asn	p.I254N	ENST00000269305	NM_001126112.2	254	aTc/aAc																																																																														
TET2	54790	MSKCC	GRCh37	4	106180838	106180838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	65	426	0	ENST00000380013.4:c.3866G>A	p.Cys1289Tyr	p.C1289Y	ENST00000380013	NM_001127208.2	1289	tGt/tAt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212439	5212439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150241840		P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	264	853	1	ENST00000357368.4:c.4678G>A	p.Val1560Met	p.V1560M	ENST00000357368	NM_002850.3	1560	Gtg/Atg																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56787260	56787260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	89	684	0	ENST00000337432.4:c.746G>A	p.Arg249His	p.R249H	ENST00000337432	NM_058216.2	249	cGt/cAt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939133	36939133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	51	903	0	ENST00000361632.4:c.576C>A	p.His192Gln	p.H192Q	ENST00000361632		192	caC/caA																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128016984	128016984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	119	760	0	ENST00000285398.2:c.2105C>G	p.Ala702Gly	p.A702G	ENST00000285398	NM_000122.1	702	gCg/gGg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120573	94120573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	70	454	0	ENST00000369303.4:c.478C>T	p.Leu160Phe	p.L160F	ENST00000369303	NM_004440.3	160	Ctt/Ttt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412308	139412308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	130	837	1	ENST00000277541.6:c.1337G>A	p.Gly446Asp	p.G446D	ENST00000277541	NM_017617.3	446	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0039377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	293	813	2	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
CBL	867	MSKCC	GRCh37	11	119155903	119155903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	249	686	0	ENST00000264033.4:c.1568C>A	p.Ala523Asp	p.A523D	ENST00000264033	NM_005188.3	523	gCt/gAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29653271	29653271	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0039377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	91	283	1	ENST00000358273.4:c.5268+1G>C		p.X1756_splice	ENST00000358273	NM_001042492.2	1756																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249505	153249505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	151	499	0	ENST00000281708.4:c.1273T>C	p.Trp425Arg	p.W425R	ENST00000281708	NM_033632.3	425	Tgg/Cgg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443760	52443760	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	159	580	0	ENST00000460680.1:c.38-1G>A		p.X13_splice	ENST00000460680	NM_004656.3	13																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439269	52439269	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GCTGGGGC			P-0039411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	188	653	0	ENST00000460680.1:c.973delinsGCCCCAGC	p.Ser325AlafsTer75	p.S325Afs*75	ENST00000460680	NM_004656.3	325	Tcc/GCCCCAGCcc																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551647	150551647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	31	538	0	ENST00000369026.2:c.360G>A	p.Met120Ile	p.M120I	ENST00000369026	NM_021960.4	120	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577151	7577156	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TACCAC	TACCAC	-			P-0039416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	332	670	1	ENST00000269305.4:c.783-1_787del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GTT			P-0039416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	537	612	0	ENST00000275493.2:c.2308_2309insGTT	p.Asp770delinsGlyTyr	p.D770delinsGY	ENST00000275493	NM_005228.3	770	gac/gGTTac																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246490567	246490567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	127	554	1	ENST00000388985.4:c.467G>A	p.Arg156Lys	p.R156K	ENST00000388985		156	aGa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	90	400	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	31	264	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0039418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	91	675	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0039418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	85	734	1	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517532	176517532	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200146267		P-0039418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	130	865	4	ENST00000292408.4:c.233G>A	p.Arg78His	p.R78H	ENST00000292408	NM_213647.1	78	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	35	524	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	46	330	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa																																																																														
ABL1	25	MSKCC	GRCh37	9	133760106	133760106	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229071		P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	138	727	1	ENST00000318560.5:c.2429C>T	p.Pro810Leu	p.P810L	ENST00000318560	NM_005157.4	810	cCg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443703	49443703	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	95	686	0	ENST00000301067.7:c.3668C>G	p.Ser1223Ter	p.S1223*	ENST00000301067	NM_003482.3	1223	tCa/tGa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552921	106552921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	107	810	0	ENST00000369096.4:c.886C>T	p.Arg296Trp	p.R296W	ENST00000369096	NM_001198.3	296	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76890189	76890189	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	23	402	0	ENST00000373344.5:c.4705C>T	p.Gln1569Ter	p.Q1569*	ENST00000373344	NM_000489.3	1569	Cag/Tag																																																																														
CDC73	79577	MSKCC	GRCh37	1	193218934	193218934	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	25	294	0	ENST00000367435.3:c.1492G>C	p.Glu498Gln	p.E498Q	ENST00000367435	NM_024529.4	498	Gaa/Caa																																																																														
ATM	472	MSKCC	GRCh37	11	108139193	108139193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	53	549	0	ENST00000278616.4:c.2695G>C	p.Asp899His	p.D899H	ENST00000278616	NM_000051.3	899	Gac/Cac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434079	49434079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	83	699	0	ENST00000301067.7:c.7474G>C	p.Gly2492Arg	p.G2492R	ENST00000301067	NM_003482.3	2492	Ggg/Cgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48916767	48916780	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAATCTGTATCT	GGGAATCTGTATCT	-			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	16	381	0	ENST00000267163.4:c.297_310del	p.Trp99CysfsTer6	p.W99Cfs*6	ENST00000267163	NM_000321.2	99	tgGGGAATCTGTATCTtt/tgtt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285176	198285176	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	50	388	0	ENST00000335508.6:c.391G>C	p.Glu131Gln	p.E131Q	ENST00000335508	NM_012433.2	131	Gag/Cag																																																																														
EP300	2033	MSKCC	GRCh37	22	41554426	41554426	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	46	424	0	ENST00000263253.7:c.3512C>G	p.Ser1171Cys	p.S1171C	ENST00000263253	NM_001429.3	1171	tCt/tGt																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197395	26197395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	39	333	0	ENST00000356476.2:c.84G>C	p.Lys28Asn	p.K28N	ENST00000356476		28	aaG/aaC																																																																														
BRCA1	672	MSKCC	GRCh37	17	41276095	41276098	+	missense_variant	Missense_Mutation	ONP	GAAG	GAAG	AAAA			P-0039421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	39	451	2	ENST00000357654.3:c.16_19delinsTTTT	p.Leu6_Arg7delinsPheCys	p.L6_R7delinsFC	ENST00000357654	NM_007294.3	6	CTTCgc/TTTTgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	369	589	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314611	30314613	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0039422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	259	617	1	ENST00000262643.3:c.1163_1165del	p.Pro388del	p.P388del	ENST00000262643	NM_001238.2	387	tCTCct/tct																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18280011	18280011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	102	527	1	ENST00000222254.8:c.2094C>A	p.His698Gln	p.H698Q	ENST00000222254	NM_005027.3	698	caC/caA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538997	187538997	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	79	520	0	ENST00000441802.2:c.8743C>G	p.Pro2915Ala	p.P2915A	ENST00000441802	NM_005245.3	2915	Cca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	28	423	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	12	677	0	ENST00000269305.4:c.949delC	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	317	Cag/ag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	188	408	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0039440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	282	687	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713568	30713568	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	194	551	0	ENST00000359013.4:c.968A>G	p.Asn323Ser	p.N323S	ENST00000359013	NM_001024847.2	323	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	23	374	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	14	294	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	18	314	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	89	673	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	97	763	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165213	47165213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	15	255	0	ENST00000409792.3:c.913delA	p.Thr305GlnfsTer35	p.T305Qfs*35	ENST00000409792	NM_014159.6	305	Aca/ca																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354008	15354008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	26	365	1	ENST00000263377.2:c.2872del	p.Leu958CysfsTer110	p.L958Cfs*110	ENST00000263377	NM_058243.2	958	Ctg/tg																																																																														
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	25	675	3	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	58	392	13	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
APC	324	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	23	316	0	ENST00000257430.4:c.2544dupA	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																														
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	113	760	1	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	49	525	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390666	139390667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	150	1438	0	ENST00000277541.6:c.7524dup	p.Phe2509LeufsTer7	p.F2509Lfs*7	ENST00000277541	NM_017617.3	2508	-/C																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274211	10274211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	109	626	0	ENST00000330684.3:c.58G>A	p.Gly20Ser	p.G20S	ENST00000330684	NM_001134407.1	20	Ggt/Agt																																																																														
ERG	2078	MSKCC	GRCh37	21	39795407	39795407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	144	1061	3	ENST00000288319.7:c.313G>A	p.Gly105Ser	p.G105S	ENST00000288319	NM_182918.3	105	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112151245	112151246	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	29	446	0	ENST00000257430.4:c.893_894del	p.His298LeufsTer28	p.H298Lfs*28	ENST00000257430	NM_000038.5	296	agCAca/agca																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	32	329	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
MLH1	4292	MSKCC	GRCh37	3	37056036	37056036	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	18	326	1	ENST00000231790.2:c.790+1G>A		p.X264_splice	ENST00000231790	NM_000249.3	264																																																																															
B2M	567	MSKCC	GRCh37	15	45003812	45003812	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	115	689	0	ENST00000558401.1:c.67+1G>A		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
FGFR2	2263	MSKCC	GRCh37	10	123276958	123276958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	20	363	1	ENST00000358487.5:c.959C>T	p.Thr320Met	p.T320M	ENST00000358487	NM_000141.4	320	aCg/aTg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38162945	38162945	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185811622		P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	11	547	0	ENST00000317025.8:c.2261C>T	p.Ser754Leu	p.S754L	ENST00000317025	NM_023034.1	754	tCg/tTg																																																																														
ARAF	369	MSKCC	GRCh37	X	47424466	47424466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	85	955	0	ENST00000377045.4:c.386G>A	p.Gly129Asp	p.G129D	ENST00000377045	NM_001654.4	129	gGc/gAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831295	72831295	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs113529778		P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	74	580	0	ENST00000268489.5:c.5286A>T	p.Gln1762His	p.Q1762H	ENST00000268489	NM_006885.3	1762	caA/caT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921637	39921637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	100	713	0	ENST00000378444.4:c.4183C>T	p.Arg1395Trp	p.R1395W	ENST00000378444	NM_001123385.1	1395	Cgg/Tgg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164466	36164466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	91	608	0	ENST00000300305.3:c.1409C>T	p.Ala470Val	p.A470V	ENST00000300305		470	gCg/gTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348283	89348283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	171	1297	0	ENST00000301030.4:c.4667C>T	p.Ala1556Val	p.A1556V	ENST00000301030	NM_001256183.1	1556	gCg/gTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133219552	133219552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	114	938	1	ENST00000320574.5:c.4582G>A	p.Ala1528Thr	p.A1528T	ENST00000320574	NM_006231.2	1528	Gcc/Acc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047135	77047135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	46	580	0	ENST00000356341.3:c.1409T>C	p.Leu470Pro	p.L470P	ENST00000356341	NM_002576.4	470	cTg/cCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49419977	49419977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	73	665	2	ENST00000301067.7:c.15772G>A	p.Ala5258Thr	p.A5258T	ENST00000301067	NM_003482.3	5258	Gcc/Acc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366670	40366670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	55	779	0	ENST00000397332.2:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000397332	NM_001033082.2	176	tGt/tAt																																																																														
BIRC3	330	MSKCC	GRCh37	11	102206733	102206733	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	22	335	0	ENST00000263464.3:c.1365del	p.Gln456AsnfsTer3	p.Q456Nfs*3	ENST00000263464	NM_001165.4	454	cTt/ct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438025	49438025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	166	1158	2	ENST00000301067.7:c.5146G>A	p.Ala1716Thr	p.A1716T	ENST00000301067	NM_003482.3	1716	Gca/Aca																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061867	38061867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	150	1377	2	ENST00000250448.2:c.122T>C	p.Met41Thr	p.M41T	ENST00000250448	NM_004496.3	41	aTg/aCg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763458	59763458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	15	536	1	ENST00000259008.2:c.2644G>A	p.Ala882Thr	p.A882T	ENST00000259008	NM_032043.2	882	Gct/Act																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222155	2222155	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	111	1402	0	ENST00000398665.3:c.2987A>G	p.Asn996Ser	p.N996S	ENST00000398665	NM_032482.2	996	aAc/aGc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602934	10602934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	144	1147	0	ENST00000171111.5:c.644C>A	p.Ala215Asp	p.A215D	ENST00000171111	NM_203500.1	215	gCc/gAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271565	15271565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	180	1652	0	ENST00000263388.2:c.6874C>T	p.Leu2292Phe	p.L2292F	ENST00000263388	NM_000435.2	2292	Ctt/Ttt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211367	36211367	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	66	911	0	ENST00000222270.7:c.1122del	p.Asp375ThrfsTer12	p.D375Tfs*12	ENST00000222270	NM_014727.1	373	gAa/ga																																																																														
CIC	23152	MSKCC	GRCh37	19	42795220	42795220	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	135	1230	0	ENST00000575354.2:c.2303del	p.Pro768ArgfsTer156	p.P768Rfs*156	ENST00000575354	NM_015125.3	767	aCc/ac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735448	40735448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	112	1015	0	ENST00000373198.4:c.3425G>T	p.Arg1142Met	p.R1142M	ENST00000373198	NM_133170.3	1142	aGg/aTg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090099	37090099	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	22	504	0	ENST00000231790.2:c.1988A>T	p.Glu663Val	p.E663V	ENST00000231790	NM_000249.3	663	gAg/gTg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205043	128205043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	151	1110	3	ENST00000341105.2:c.398G>A	p.Gly133Asp	p.G133D	ENST00000341105	NM_032638.4	133	gGc/gAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67575441	67575441	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112487959		P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	23	254	0	ENST00000274335.5:c.514G>A	p.Val172Met	p.V172M	ENST00000274335		172	Gtg/Atg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502242	157502242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	100	767	0	ENST00000346085.5:c.3275C>T	p.Ala1092Val	p.A1092V	ENST00000346085	NM_020732.3	1092	gCc/gTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859569	151859569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138747124		P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	26	504	1	ENST00000262189.6:c.11093C>T	p.Thr3698Met	p.T3698M	ENST00000262189	NM_170606.2	3698	aCg/aTg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635156	87635156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	84	726	0	ENST00000277120.3:c.2208G>A	p.Met736Ile	p.M736I	ENST00000277120		736	atG/atA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396205	139396205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	162	1140	0	ENST00000277541.6:c.5633G>T	p.Gly1878Val	p.G1878V	ENST00000277541	NM_017617.3	1878	gGg/gTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932047	39932047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	27	1080	0	ENST00000378444.4:c.2552A>G	p.Asp851Gly	p.D851G	ENST00000378444	NM_001123385.1	851	gAt/gGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	30	445	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	38	964	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	31	342	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851646	134851646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	28	594	1	ENST00000398015.3:c.1052G>A	p.Arg351Gln	p.R351Q	ENST00000398015	NM_004441.4	351	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624290	89624290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	36	554	2	ENST00000371953.3:c.64G>T	p.Asp22Tyr	p.D22Y	ENST00000371953	NM_000314.4	22	Gac/Tac																																																																														
KIT	3815	MSKCC	GRCh37	4	55604658	55604658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	45	550	2	ENST00000288135.5:c.2866C>T	p.Arg956Trp	p.R956W	ENST00000288135	NM_000222.2	956	Cgg/Tgg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273297	18273297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	30	524	1	ENST00000222254.8:c.1090G>A	p.Glu364Lys	p.E364K	ENST00000222254	NM_005027.3	364	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530159	212530159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	20	339	0	ENST00000342788.4:c.1760C>G	p.Pro587Arg	p.P587R	ENST00000342788	NM_005235.2	587	cCa/cGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891313	151891313	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0039442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	51	416	0	ENST00000262189.6:c.4540+1G>C		p.X1514_splice	ENST00000262189	NM_170606.2	1514																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	77	485	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	67	236	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427721	72427721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	114	433	1	ENST00000477973.2:c.767G>A	p.Val257Ile	p.V257I	ENST00000477973	NM_012234.5	257	Gtc/Atc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	354	908	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	136	620	3	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	62	317	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	60	332	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	66	268	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129374	64129374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142374327		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	197	887	2	ENST00000334205.4:c.806C>T	p.Ala269Val	p.A269V	ENST00000334205	NM_003942.2	269	gCg/gTg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808647	1808647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	202	1058	0	ENST00000260795.2:c.2260G>A	p.Val754Met	p.V754M	ENST00000260795		754	Gtg/Atg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	92	379	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	208	1045	8	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	103	497	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	129	499	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	127	632	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	115	479	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195289	102195289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186307109		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	78	364	0	ENST00000263464.3:c.49G>A	p.Ala17Thr	p.A17T	ENST00000263464	NM_001165.4	17	Gcc/Acc																																																																														
CASP8	841	MSKCC	GRCh37	2	202150022	202150022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	77	626	0	ENST00000358485.4:c.1463T>C	p.Leu488Pro	p.L488P	ENST00000358485	NM_001080125.1	488	cTg/cCg																																																																														
TET1	80312	MSKCC	GRCh37	10	70404693	70404693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	143	477	0	ENST00000373644.4:c.2207C>T	p.Ser736Leu	p.S736L	ENST00000373644	NM_030625.2	736	tCg/tTg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966159	25966159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	160	746	0	ENST00000435504.4:c.3047C>T	p.Thr1016Met	p.T1016M	ENST00000435504		1016	aCg/aTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42041117	42041117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	155	616	0	ENST00000219905.7:c.5495G>A	p.Arg1832Gln	p.R1832Q	ENST00000219905	NM_001164273.1	1832	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711908	89711910	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-	rs587780711		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	55	423	0	ENST00000371953.3:c.532_534del	p.Tyr178del	p.Y178del	ENST00000371953	NM_000314.4	176	TAT/-																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	70	329	1	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965736	93965736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	53	257	0	ENST00000369303.4:c.2192C>T	p.Thr731Ile	p.T731I	ENST00000369303	NM_004440.3	731	aCa/aTa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246447	53246447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	131	695	0	ENST00000375401.3:c.535C>T	p.Arg179Cys	p.R179C	ENST00000375401	NM_004187.3	179	Cgt/Tgt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836386	89836386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	162	743	1	ENST00000389301.3:c.2363C>T	p.Ala788Val	p.A788V	ENST00000389301	NM_000135.2	788	gCc/gTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250399	10250399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	81	627	0	ENST00000340748.4:c.3853C>T	p.Arg1285Cys	p.R1285C	ENST00000340748		1285	Cgc/Tgc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40376852	40376852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	161	722	0	ENST00000293328.3:c.320G>A	p.Arg107His	p.R107H	ENST00000293328	NM_012448.3	107	cGc/cAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099427	157099432	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1234257273		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	37	296	2	ENST00000346085.5:c.381_386del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	122	CAGCAG/-																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816544	32816544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	213	966	2	ENST00000354258.4:c.1631G>A	p.Arg544His	p.R544H	ENST00000354258	NM_000593.5	544	cGc/cAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468426	120468426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	91	661	0	ENST00000256646.2:c.4013C>T	p.Ser1338Phe	p.S1338F	ENST00000256646	NM_024408.3	1338	tCc/tTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350882	89350882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	224	761	0	ENST00000301030.4:c.2068G>A	p.Asp690Asn	p.D690N	ENST00000301030	NM_001256183.1	690	Gat/Aat																																																																														
AGO2	27161	MSKCC	GRCh37	8	141595382	141595382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	223	851	1	ENST00000220592.5:c.51del	p.Ile18SerfsTer121	p.I18Sfs*121	ENST00000220592	NM_012154.3	17	ccC/cc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458824	120458824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	191	787	0	ENST00000256646.2:c.6521G>A	p.Gly2174Glu	p.G2174E	ENST00000256646	NM_024408.3	2174	gGg/gAg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798769	135798769	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	63	354	0	ENST00000298552.3:c.474del	p.Phe158LeufsTer9	p.F158Lfs*9	ENST00000298552	NM_001162426.1	158	ttT/tt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120094	70120094	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	16	73	0	ENST00000245479.2:c.1100delC	p.Pro367HisfsTer16	p.P367Hfs*16	ENST00000245479	NM_000346.3	366	Ccc/cc																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647142	2647142	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	108	492	0	ENST00000342085.4:c.1420C>T	p.Arg474Ter	p.R474*	ENST00000342085	NM_002613.4	474	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255775	16255775	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199847404		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	103	492	0	ENST00000375759.3:c.3040G>A	p.Val1014Met	p.V1014M	ENST00000375759	NM_015001.2	1014	Gtg/Atg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65301191	65301192	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TA	TA	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	45	211	0	ENST00000342505.4:c.3259-3_3259-2del		p.X1087_splice	ENST00000342505	NM_002227.2	1087																																																																															
PARP1	142	MSKCC	GRCh37	1	226552736	226552736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	179	648	1	ENST00000366794.5:c.2625G>T	p.Gln875His	p.Q875H	ENST00000366794	NM_001618.3	875	caG/caT																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724708	112724708	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	70	442	0	ENST00000369452.4:c.592T>C	p.Tyr198His	p.Y198H	ENST00000369452	NM_007373.3	198	Tac/Cac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445229	49445229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	218	1058	0	ENST00000301067.7:c.2237G>A	p.Arg746Gln	p.R746Q	ENST00000301067	NM_003482.3	746	cGg/cAg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046610	30046610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	155	645	0	ENST00000331968.5:c.2573G>A	p.Arg858His	p.R858H	ENST00000331968	NM_002742.2	858	cGc/cAc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81528547	81528547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	44	110	0	ENST00000298171.2:c.226C>T	p.Pro76Ser	p.P76S	ENST00000298171	NM_000369.2	76	Ccc/Tcc																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2097758	2097758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	170	821	0	ENST00000219066.1:c.91G>A	p.Gly31Arg	p.G31R	ENST00000219066	NM_002528.5	31	Ggg/Agg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821200	72821200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	177	845	0	ENST00000268489.5:c.10975G>A	p.Asp3659Asn	p.D3659N	ENST00000268489	NM_006885.3	3659	Gac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984678	72984678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	218	824	4	ENST00000268489.5:c.2906G>A	p.Arg969His	p.R969H	ENST00000268489	NM_006885.3	969	cGc/cAc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89811380	89811380	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	109	1025	2	ENST00000389301.3:c.3613C>T	p.Gln1205Ter	p.Q1205*	ENST00000389301	NM_000135.2	1205	Cag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120439	70120439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	239	1147	0	ENST00000245479.2:c.1441G>A	p.Ala481Thr	p.A481T	ENST00000245479	NM_000346.3	481	Gcc/Acc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210687	2210687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	222	1034	3	ENST00000398665.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000398665	NM_032482.2	395	cGc/cAc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273315	18273315	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	89	443	1	ENST00000222254.8:c.1108A>G	p.Arg370Gly	p.R370G	ENST00000222254	NM_005027.3	370	Agg/Ggg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229355	36229355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	148	716	1	ENST00000222270.7:c.8045G>A	p.Arg2682His	p.R2682H	ENST00000222270	NM_014727.1	2682	cGt/cAt																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856030	45856030	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139002770		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	221	904	2	ENST00000391945.4:c.1876G>A	p.Val626Ile	p.V626I	ENST00000391945	NM_000400.3	626	Gtc/Atc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082483	16082483	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	174	843	3	ENST00000281043.3:c.302del	p.Gly101AspfsTer30	p.G101Dfs*30	ENST00000281043	NM_005378.4	99	ctG/ct																																																																														
EP300	2033	MSKCC	GRCh37	22	41573881	41573881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	181	963	2	ENST00000263253.7:c.6166C>T	p.Arg2056Trp	p.R2056W	ENST00000263253	NM_001429.3	2056	Cgg/Tgg																																																																														
MSH3	4437	MSKCC	GRCh37	5	80149965	80149966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	50	342	0	ENST00000265081.6:c.2838_2839dup	p.Lys947IlefsTer11	p.K947Ifs*11	ENST00000265081	NM_002439.4	944	aat/aATat																																																																														
APC	324	MSKCC	GRCh37	5	112102982	112102982	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201764637		P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	109	534	0	ENST00000257430.4:c.317G>A	p.Arg106His	p.R106H	ENST00000257430	NM_000038.5	106	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112176661	112176661	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	59	213	0	ENST00000257430.4:c.5375del	p.Asn1792MetfsTer8	p.N1792Mfs*8	ENST00000257430	NM_000038.5	1790	agA/ag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131926920	131926920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	35	165	0	ENST00000265335.6:c.1457G>A	p.Arg486His	p.R486H	ENST00000265335		486	cGt/cAt																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858420	27858420	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	121	578	0	ENST00000359303.2:c.151G>T	p.Glu51Ter	p.E51*	ENST00000359303	NM_003535.2	51	Gag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680619	30680619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	144	606	2	ENST00000376406.3:c.1100C>T	p.Ala367Val	p.A367V	ENST00000376406	NM_014641.2	367	gCc/gTc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800444	32800444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	264	1169	2	ENST00000374899.4:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000374899	NM_018833.2	368	cGg/cAg																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748539	43748539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	139	538	0	ENST00000523873.1:c.493G>A	p.Val165Met	p.V165M	ENST00000523873		165	Gtg/Atg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100411	157100411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	23	84	0	ENST00000346085.5:c.1348C>T	p.Pro450Ser	p.P450S	ENST00000346085	NM_020732.3	450	Ccg/Tcg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508868	106508868	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	39	630	1	ENST00000359195.3:c.866del	p.Asn289ThrfsTer5	p.N289Tfs*5	ENST00000359195	NM_002649.2	288	Aaa/aa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127951922	127951922	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	206	796	1	ENST00000373547.4:c.75+1G>A		p.X25_splice	ENST00000373547	NM_002721.4	25																																																																															
RXRA	6256	MSKCC	GRCh37	9	137300801	137300801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	49	796	0	ENST00000481739.1:c.446T>C	p.Val149Ala	p.V149A	ENST00000481739	NM_002957.4	149	gTg/gCg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006837	47006837	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0039443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	224	919	0	ENST00000329236.7:c.-44G>A		p.*15*	ENST00000329236	NM_001204466.1																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11130342	11130342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	398	823	1	ENST00000344626.4:c.2581G>A	p.Glu861Lys	p.E861K	ENST00000344626	NM_003072.3	861	Gag/Aag																																																																														
VHL	7428	MSKCC	GRCh37	3	10191547	10191547	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	303	556	0	ENST00000256474.2:c.540del	p.Ile180MetfsTer22	p.I180Mfs*22	ENST00000256474	NM_000551.3	180	atC/at																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098625	47098625	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	354	721	0	ENST00000409792.3:c.6649del	p.Leu2217PhefsTer31	p.L2217Ffs*31	ENST00000409792	NM_014159.6	2217	Ctt/tt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651405	52651405	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	285	611	0	ENST00000394830.3:c.1691del	p.Glu564GlyfsTer5	p.E564Gfs*5	ENST00000394830	NM_018313.4	564	gAg/gg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151935881	151935881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	23	11	0	ENST00000262189.6:c.2563C>A	p.Pro855Thr	p.P855T	ENST00000262189	NM_170606.2	855	Cca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0039445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	100	765	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	58	450	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938468	44938468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	40	476	0	ENST00000377967.4:c.3016C>T	p.Gln1006Ter	p.Q1006*	ENST00000377967	NM_021140.2	1006	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	382	750	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579718	7579718	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	260	657	0	ENST00000269305.4:c.78delT	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	26	ctT/ct																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18524238	18524238	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	347	528	0	ENST00000266497.5:c.1751del	p.Pro584GlnfsTer14	p.P584Qfs*14	ENST00000266497		584	Cca/ca																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061206	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCGCAAGTAGCAGCCGTTCTCGAACATGTT	GCGCAAGTAGCAGCCGTTCTCGAACATGTT	-			P-0039446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	247	543	0	ENST00000250448.2:c.754_783del	p.Asn252_Arg261del	p.N252_R261del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGCTACTTGCGC/-																																																																														
MGA	23269	MSKCC	GRCh37	15	42059169	42059170	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	223	462	0	ENST00000219905.7:c.8895dup	p.Thr2966HisfsTer33	p.T2966Hfs*33	ENST00000219905	NM_001164273.1	2963	-/C																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	164	433	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266769	18266769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	322	696	0	ENST00000222254.8:c.80C>T	p.Pro27Leu	p.P27L	ENST00000222254	NM_005027.3	27	cCc/cTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169935	32169935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142477287		P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	307	952	2	ENST00000375023.3:c.3673C>T	p.Arg1225Trp	p.R1225W	ENST00000375023	NM_004557.3	1225	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	209	349	2				ENST00000310581	NM_198253.2																																																																																
AXL	558	MSKCC	GRCh37	19	41763500	41763500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	257	553	0	ENST00000301178.4:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000301178	NM_021913.4	767	Cgc/Tgc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123246934	123246934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	205	471	0	ENST00000358487.5:c.1991G>A	p.Arg664Gln	p.R664Q	ENST00000358487	NM_000141.4	664	cGg/cAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262528	16262528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	161	374	0	ENST00000375759.3:c.9793G>A	p.Gly3265Ser	p.G3265S	ENST00000375759	NM_015001.2	3265	Ggt/Agt																																																																														
JUN	3725	MSKCC	GRCh37	1	59248495	59248495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	263	633	0	ENST00000371222.2:c.248C>T	p.Ser83Phe	p.S83F	ENST00000371222	NM_002228.3	83	tCc/tTc																																																																														
AKT1	207	MSKCC	GRCh37	14	105240317	105240317	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	36	724	0	ENST00000349310.3:c.634G>A	p.Ala212Thr	p.A212T	ENST00000349310	NM_001014432.1	212	Gcc/Acc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632476	3632476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	365	966	1	ENST00000294008.3:c.5372G>A	p.Arg1791His	p.R1791H	ENST00000294008	NM_032444.2	1791	cGt/cAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857259	9857259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	290	612	0	ENST00000330684.3:c.4142G>A	p.Arg1381Lys	p.R1381K	ENST00000330684	NM_001134407.1	1381	aGa/aAa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11106975	11106975	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	373	835	0	ENST00000344626.4:c.1680C>G	p.Tyr560Ter	p.Y560*	ENST00000344626	NM_003072.3	560	taC/taG																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213940	36213941	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	342	1022	0	ENST00000222270.7:c.2766_2767delinsTT	p.Arg923Trp	p.R923W	ENST00000222270	NM_014727.1	922	tcCCgg/tcTTgg																																																																														
INHA	3623	MSKCC	GRCh37	2	220437308	220437308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	402	1102	0	ENST00000243786.2:c.212G>A	p.Gly71Asp	p.G71D	ENST00000243786	NM_002191.3	71	gGc/gAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524426	187524426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	280	592	0	ENST00000441802.2:c.11254G>T	p.Val3752Leu	p.V3752L	ENST00000441802	NM_005245.3	3752	Gtg/Ttg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674231	117674231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	321	636	0	ENST00000368508.3:c.4243G>A	p.Gly1415Arg	p.G1415R	ENST00000368508	NM_002944.2	1415	Ggg/Agg																																																																														
ATRX	546	MSKCC	GRCh37	X	76872162	76872162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	135	516	0	ENST00000373344.5:c.5485C>T	p.Pro1829Ser	p.P1829S	ENST00000373344	NM_000489.3	1829	Cca/Tca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	48	722	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	58	513	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	50	336	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	63	478	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	74	577	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	60	422	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370985	55370985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	119	645	0	ENST00000297316.4:c.287C>G	p.Ala96Gly	p.A96G	ENST00000297316	NM_022454.3	96	gCc/gGc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	120	772	4	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
ATM	472	MSKCC	GRCh37	11	108199953	108199953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	33	190	0	ENST00000278616.4:c.7296del	p.Gln2433ArgfsTer7	p.Q2433Rfs*7	ENST00000278616	NM_000051.3	2432	aTt/at																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717712	89717712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	59	464	0	ENST00000371953.3:c.737C>T	p.Pro246Leu	p.P246L	ENST00000371953	NM_000314.4	246	cCg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27058045	27058045	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	82	543	0	ENST00000324856.7:c.1753C>T	p.Gln585Ter	p.Q585*	ENST00000324856	NM_006015.4	585	Cag/Tag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701889	43701889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	45	282	0	ENST00000382044.4:c.5356C>T	p.Arg1786Ter	p.R1786*	ENST00000382044	NM_001141980.1	1786	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220916	36220918	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	55	361	0	ENST00000222270.7:c.4970_4972del	p.Ser1657del	p.S1657del	ENST00000222270	NM_014727.1	1656	TCC/-																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52709249	52709249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	107	649	0	ENST00000322088.6:c.203C>T	p.Ala68Val	p.A68V	ENST00000322088	NM_014225.5	68	gCc/gTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187519281	187519281	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	62	461	0	ENST00000441802.2:c.12104-2del		p.X4035_splice	ENST00000441802	NM_005245.3	4035																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32178653	32178653	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	78	896	0	ENST00000375023.3:c.2741A>G	p.Tyr914Cys	p.Y914C	ENST00000375023	NM_004557.3	914	tAt/tGt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457336	67457336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	109	754	1	ENST00000327367.4:c.310C>T	p.Arg104Trp	p.R104W	ENST00000327367	NM_005902.3	104	Cgg/Tgg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0039508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	17	28	1	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462360	89462360	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000604-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1181	98	343	0	ENST00000336596.2:c.1832A>C	p.Glu611Ala	p.E611A	ENST00000336596	NM_005233.5	611	gAg/gCg																																																																														
ABL1	25	MSKCC	GRCh37	9	133747572	133747572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000604-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	55	273	0	ENST00000318560.5:c.879C>G	p.Ile293Met	p.I293M	ENST00000318560	NM_005157.4	293	atC/atG																																																																														
PAK1	5058	MSKCC	GRCh37	11	77090381	77090381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000604-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1332	148	493	1	ENST00000356341.3:c.344C>T	p.Ser115Leu	p.S115L	ENST00000356341	NM_002576.4	115	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877454	40877454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000604-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	52	204	0	ENST00000373198.4:c.2242A>G	p.Thr748Ala	p.T748A	ENST00000373198	NM_133170.3	748	Acc/Gcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008967-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			706	18	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0008967-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			897	39	444	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008967-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			681	17	355	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0025691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	177	474	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	145	460	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	105	558	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176012845	176012845	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0025691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	85	325	0	ENST00000367669.3:c.1530+1del		p.X510_splice	ENST00000367669	NM_022457.5	510																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201739	66201739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	79	455	2	ENST00000273854.3:c.2763C>A	p.Ser921Arg	p.S921R	ENST00000273854	NM_004439.5	921	agC/agA																																																																														
TERT	7015	MSKCC	GRCh37	5	1293461	1293461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	164	582	0	ENST00000310581.5:c.1540G>T	p.Val514Leu	p.V514L	ENST00000310581	NM_198253.2	514	Gtg/Ttg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671655	30671655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	103	635	0	ENST00000376406.3:c.5305G>A	p.Ala1769Thr	p.A1769T	ENST00000376406	NM_014641.2	1769	Gcc/Acc																																																																														
SMO	6608	MSKCC	GRCh37	7	128850885	128850885	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	77	538	0	ENST00000249373.3:c.1732G>T	p.Glu578Ter	p.E578*	ENST00000249373	NM_005631.4	578	Gag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670570	30670570	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	81	488	1	ENST00000376406.3:c.5950C>T	p.Gln1984Ter	p.Q1984*	ENST00000376406	NM_014641.2	1984	Caa/Taa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44936058	44936058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	57	191	0	ENST00000377967.4:c.2819C>A	p.Thr940Lys	p.T940K	ENST00000377967	NM_021140.2	940	aCa/aAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031258-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			717	160	481	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031258-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			932	195	639	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031258-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			340	80	379	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905560	50905568	+	inframe_deletion	In_Frame_Del	DEL	GGCATCCGT	GGCATCCGT	-			P-0031258-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			978	227	968	0	ENST00000440232.2:c.689_697del	p.Gly230_Arg232del	p.G230_R232del	ENST00000440232	NM_002691.3	230	GGCATCCGT/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	365	559	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	49039093	49039241	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTTTTTTTTTTTTTTTTTTTTTTTACTGTTCTTCCTCAGACATTCAAACGTGTTTTGATCAAAGAAGAGGAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTCATGCAGAGACTGAAAACAAATATTTTGCAGTATGCTTCC	ACTTTTTTTTTTTTTTTTTTTTTTTTACTGTTCTTCCTCAGACATTCAAACGTGTTTTGATCAAAGAAGAGGAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTCATGCAGAGACTGAAAACAAATATTTTGCAGTATGCTTCC	-			P-0039120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	45	75	0	ENST00000267163.4:c.2212-39_2321del		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																															
CYSLTR2	57105	MSKCC	GRCh37	13	49280972	49280972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	156	416	0	ENST00000282018.3:c.19T>C	p.Ser7Pro	p.S7P	ENST00000282018	NM_020377.2	7	Tcc/Ccc																																																																														
NF1	4763	MSKCC	GRCh37	17	29528053	29528053	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0039120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	32	51	0	ENST00000358273.4:c.1063-2A>G		p.X355_splice	ENST00000358273	NM_001042492.2	355																																																																															
LATS1	9113	MSKCC	GRCh37	6	150016321	150016321	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	156	364	0	ENST00000253339.5:c.385A>T	p.Arg129Ter	p.R129*	ENST00000253339		129	Aga/Tga																																																																														
MET	4233	MSKCC	GRCh37	7	116436162	116436162	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	116	258	0	ENST00000397752.3:c.4157T>A	p.Phe1386Tyr	p.F1386Y	ENST00000397752	NM_000245.2	1386	tTc/tAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798755	135798755	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	69	246	0	ENST00000298552.3:c.488C>A	p.Ser163Ter	p.S163*	ENST00000298552	NM_001162426.1	163	tCa/tAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	281	383	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	297	707	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288799	15288799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	138	201	0	ENST00000263388.2:c.3940G>A	p.Ala1314Thr	p.A1314T	ENST00000263388	NM_000435.2	1314	Gcc/Acc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713829	30713829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	271	618	2	ENST00000359013.4:c.1229T>A	p.Ile410Asn	p.I410N	ENST00000359013	NM_001024847.2	410	aTc/aAc																																																																														
NBN	4683	MSKCC	GRCh37	8	90992975	90992975	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	137	362	0	ENST00000265433.3:c.467A>T	p.Lys156Ile	p.K156I	ENST00000265433	NM_002485.4	156	aAa/aTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76855977	76855977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	171	495	0	ENST00000373344.5:c.5623G>T	p.Asp1875Tyr	p.D1875Y	ENST00000373344	NM_000489.3	1875	Gat/Tat																																																																														
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	19	271	2	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	92	667	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561423	9561423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201131316		P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	66	479	0	ENST00000353224.5:c.359C>T	p.Ala120Val	p.A120V	ENST00000353224	NM_177990.2	120	gCg/gTg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	74	473	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	69	521	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	59	384	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	49	288	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	114	637	0	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508374	106508374	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200423506		P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	38	290	0	ENST00000359195.3:c.368G>A	p.Arg123His	p.R123H	ENST00000359195	NM_002649.2	123	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	43	392	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974899	15974899	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	59	378	0	ENST00000268712.3:c.3976C>T	p.Arg1326Ter	p.R1326*	ENST00000268712	NM_006311.3	1326	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	72	429	3	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993013	72993014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	119	822	1	ENST00000268489.5:c.1031dup	p.Asn344LysfsTer13	p.N344Kfs*13	ENST00000268489	NM_006885.3	344	aac/aaAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249468	153249468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	68	422	0	ENST00000281708.4:c.1310G>T	p.Gly437Val	p.G437V	ENST00000281708	NM_033632.3	437	gGa/gTa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120460319	120460319	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	61	439	1	ENST00000256646.2:c.5996del	p.Asn1999MetfsTer32	p.N1999Mfs*32	ENST00000256646	NM_024408.3	1999	aAt/at																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841231	15841236	+	inframe_deletion	In_Frame_Del	DEL	AGCCGG	AGCCGG	-			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	54	422	0	ENST00000307771.7:c.1338_1343delGAGCCG	p.Ser447_Arg448del	p.S447_R448del	ENST00000307771	NM_005089.3	439	AGCCGG/-																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624306	89624306	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	62	510	0	ENST00000371953.3:c.79+1G>A		p.X27_splice	ENST00000371953	NM_000314.4	27																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106100	27106100	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	79	488	1	ENST00000324856.7:c.5715delA	p.Lys1905AsnfsTer18	p.K1905Nfs*18	ENST00000324856	NM_006015.4	1904	gAa/ga																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605204	46605204	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	44	312	3	ENST00000263734.3:c.1421G>C	p.Ser474Thr	p.S474T	ENST00000263734	NM_001430.4	474	aGc/aCc																																																																														
APC	324	MSKCC	GRCh37	5	112176192	112176192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	52	365	0	ENST00000257430.4:c.4901C>T	p.Pro1634Leu	p.P1634L	ENST00000257430	NM_000038.5	1634	cCg/cTg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099405	4099405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	99	599	1	ENST00000262948.5:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000262948	NM_030662.3	238	cGg/cAg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40353767	40353767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	58	582	0	ENST00000293328.3:c.2353G>A	p.Ala785Thr	p.A785T	ENST00000293328	NM_012448.3	785	Gca/Aca																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073878	8073878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	50	291	0	ENST00000377482.5:c.781G>A	p.Ala261Thr	p.A261T	ENST00000377482	NM_018948.3	261	Gcc/Acc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624294	89624294	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	53	472	0	ENST00000371953.3:c.68T>C	p.Leu23Ser	p.L23S	ENST00000371953	NM_000314.4	23	tTa/tCa																																																																														
CCND2	894	MSKCC	GRCh37	12	4387968	4387968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	59	516	0	ENST00000261254.3:c.454G>A	p.Ala152Thr	p.A152T	ENST00000261254	NM_001759.3	152	Gca/Aca																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281669	49281669	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199903030		P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	94	690	1	ENST00000282018.3:c.716G>A	p.Arg239Gln	p.R239Q	ENST00000282018	NM_020377.2	239	cGg/cAg																																																																														
RARA	5914	MSKCC	GRCh37	17	38512297	38512297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	97	667	1	ENST00000254066.5:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000254066	NM_000964.3	403	cCg/cTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7267618	7267618	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	99	683	0	ENST00000302850.5:c.390A>T	p.Glu130Asp	p.E130D	ENST00000302850	NM_000208.2	130	gaA/gaT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098952	47098952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	63	461	0	ENST00000409792.3:c.6322G>A	p.Val2108Ile	p.V2108I	ENST00000409792	NM_014159.6	2108	Gta/Ata																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597385	52597386	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	46	443	0	ENST00000394830.3:c.3924_3925del	p.Asp1308GlufsTer2	p.D1308Efs*2	ENST00000394830	NM_018313.4	1308	gaTAgt/gagt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413665	138413665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	69	390	1	ENST00000289153.2:c.1855G>A	p.Val619Ile	p.V619I	ENST00000289153	NM_006219.2	619	Gtt/Att																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938775	178938775	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	76	381	0	ENST00000263967.3:c.2017T>A	p.Ser673Thr	p.S673T	ENST00000263967	NM_006218.2	673	Tct/Act																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156570	55156570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	65	440	0	ENST00000257290.5:c.2971G>A	p.Val991Ile	p.V991I	ENST00000257290	NM_006206.4	991	Gtc/Atc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56171015	56171016	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	40	250	0	ENST00000399503.3:c.1845_1846dup	p.Gly616ValfsTer41	p.G616Vfs*41	ENST00000399503	NM_005921.1	615	agt/aGTgt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177000	56177000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	38	294	0	ENST00000399503.3:c.2270G>A	p.Arg757His	p.R757H	ENST00000399503	NM_005921.1	757	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	34	482	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0039233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	133	426	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	185	415	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589619	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAGAATATGATA			P-0039233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	16	222	0	ENST00000274335.5:c.1384_1395dup	p.Glu462_Arg465dup	p.E462_R465dup	ENST00000274335		462	cga/cGAGAATATGATAga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099958	27099958	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	210	511	0	ENST00000324856.7:c.3837T>A	p.Tyr1279Ter	p.Y1279*	ENST00000324856	NM_006015.4	1279	taT/taA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720857	89720858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	157	307	0	ENST00000371953.3:c.1012dup	p.Ser338PhefsTer5	p.S338Ffs*5	ENST00000371953	NM_000314.4	336	-/T																																																																														
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	563	330	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145337	58145337	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	4302	435	0	ENST00000257904.6:c.164G>C	p.Arg55Pro	p.R55P	ENST00000257904	NM_000075.3	55	cGt/cCt																																																																														
CIC	23152	MSKCC	GRCh37	19	42796161	42796246	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACTTGAGGTCTTGGTCTTCCCCTGCCCCAGTCTGGGGCCACAGCTCACCCTGGCCTATGGGTGCCCTTCTCCACAGATCATCCAG	CACTTGAGGTCTTGGTCTTCCCCTGCCCCAGTCTGGGGCCACAGCTCACCCTGGCCTATGGGTGCCCTTCTCCACAGATCATCCAG	-			P-0039236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	116	250	0	ENST00000575354.2:c.2887-76_2896del		p.X963_splice	ENST00000575354	NM_015125.3	963																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057000	180057000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	97	805	0	ENST00000261937.6:c.619G>A	p.Glu207Lys	p.E207K	ENST00000261937	NM_182925.4	207	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0039288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	44	621	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622419	28622419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	23	475	1	ENST00000241453.7:c.1198G>A	p.Gly400Arg	p.G400R	ENST00000241453	NM_004119.2	400	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	324	590	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943673	9943673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	195	670	0	ENST00000330684.3:c.1268A>G	p.Asp423Gly	p.D423G	ENST00000330684	NM_001134407.1	423	gAc/gGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604748	48604748	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	172	477	0	ENST00000342988.3:c.1570T>A	p.Trp524Arg	p.W524R	ENST00000342988	NM_005359.5	524	Tgg/Agg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230632	46230632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	145	539	0	ENST00000334344.6:c.881G>C	p.Arg294Thr	p.R294T	ENST00000334344	NM_152641.2	294	aGa/aCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	279	431	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1264586	1264586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	192	528	0	ENST00000310581.5:c.2776G>A	p.Gly926Ser	p.G926S	ENST00000310581	NM_198253.2	926	Ggc/Agc																																																																														
PARP1	142	MSKCC	GRCh37	1	226595555	226595555	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	75	354	0	ENST00000366794.5:c.76G>C	p.Glu26Gln	p.E26Q	ENST00000366794	NM_001618.3	26	Gag/Cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100172	27100172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	98	392	0	ENST00000324856.7:c.3968G>A	p.Arg1323His	p.R1323H	ENST00000324856	NM_006015.4	1323	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	116	508	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692893	89692893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	36	270	0	ENST00000371953.3:c.377C>T	p.Ala126Val	p.A126V	ENST00000371953	NM_000314.4	126	gCt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	60	254	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	109	625	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497512	125497512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	37	200	0	ENST00000428830.2:c.76G>A	p.Ala26Thr	p.A26T	ENST00000428830	NM_001114121.2	26	Gct/Act																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560464	95560464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	109	456	0	ENST00000343455.3:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000343455	NM_177438.2	1709	Gat/Aat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572555	95572555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	52	173	0	ENST00000343455.3:c.2810G>T	p.Arg937Leu	p.R937L	ENST00000343455	NM_177438.2	937	cGc/cTc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645174	67645175	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	75	540	0	ENST00000264010.4:c.441dup	p.Ala148CysfsTer4	p.A148Cfs*4	ENST00000264010	NM_006565.3	147	ctt/cTtt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821642	72821643	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGCCG			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	11	81	0	ENST00000268489.5:c.10527_10532dupCGGCGG	p.Gly3511_Gly3512dup	p.G3511_G3512dup	ENST00000268489	NM_006885.3	3511	ggt/ggCGGCGGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829164	72829164	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	126	469	0	ENST00000268489.5:c.7417C>T	p.Gln2473Ter	p.Q2473*	ENST00000268489	NM_006885.3	2473	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992474	72992474	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	168	651	0	ENST00000268489.5:c.1571del	p.Ala524ValfsTer12	p.A524Vfs*12	ENST00000268489	NM_006885.3	524	gCt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	256	576	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226373	2226373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	170	617	1	ENST00000398665.3:c.3853G>T	p.Asp1285Tyr	p.D1285Y	ENST00000398665	NM_032482.2	1285	Gat/Tat																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5274317	5274317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	129	522	0	ENST00000357368.4:c.130G>A	p.Gly44Ser	p.G44S	ENST00000357368	NM_002850.3	44	Ggc/Agc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45651306	45651307	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	122	514	0	ENST00000407780.3:c.718_719delGA	p.Asp240GlnfsTer81	p.D240Qfs*81	ENST00000407780	NM_001283052.1	240	GAc/c																																																																														
RAF1	5894	MSKCC	GRCh37	3	12650827	12650827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	49	288	0	ENST00000251849.4:c.328G>A	p.Ala110Thr	p.A110T	ENST00000251849	NM_002880.3	110	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	84	416	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	50	317	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56179449	56179451	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	34	245	0	ENST00000399503.3:c.3767_3769del	p.Ser1256del	p.S1256del	ENST00000399503	NM_005921.1	1254	ttTTCt/ttt																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515198	149515198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	165	582	1	ENST00000261799.4:c.284C>T	p.Thr95Met	p.T95M	ENST00000261799	NM_002609.3	95	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	279	560	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	44	314	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
RET	5979	MSKCC	GRCh37	10	43615035	43615035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142318626		P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	97	598	0	ENST00000355710.3:c.2449C>T	p.Arg817Cys	p.R817C	ENST00000355710	NM_020975.4	817	Cgc/Tgc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984024	2984024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	172	532	0	ENST00000396946.4:c.506C>T	p.Thr169Met	p.T169M	ENST00000396946	NM_032415.4	169	aCg/aTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419957	41419957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	115	524	0	ENST00000373198.4:c.364G>A	p.Val122Ile	p.V122I	ENST00000373198	NM_133170.3	122	Gtc/Atc																																																																														
KIT	3815	MSKCC	GRCh37	4	55564615	55564615	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149092990		P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	106	532	0	ENST00000288135.5:c.503C>T	p.Ala168Val	p.A168V	ENST00000288135	NM_000222.2	168	gCg/gTg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085824	16085824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	195	499	0	ENST00000281043.3:c.1000G>A	p.Ala334Thr	p.A334T	ENST00000281043	NM_005378.4	334	Gcc/Acc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3799677	3799677	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	25	263	0	ENST00000262367.5:c.3787T>G	p.Ser1263Ala	p.S1263A	ENST00000262367	NM_004380.2	1263	Tca/Gca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828584	72828584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	62	572	1	ENST00000268489.5:c.7997C>T	p.Pro2666Leu	p.P2666L	ENST00000268489	NM_006885.3	2666	cCg/cTg																																																																														
ALK	238	MSKCC	GRCh37	2	29543634	29543634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	98	533	0	ENST00000389048.3:c.1529G>A	p.Arg510Gln	p.R510Q	ENST00000389048	NM_004304.4	510	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112174555	112174556	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0039319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	61	420	0	ENST00000257430.4:c.3265_3266insAT	p.Phe1089TyrfsTer38	p.F1089Yfs*38	ENST00000257430	NM_000038.5	1088	-/TA																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575204	48575206	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	ACG	ACG	-			P-0039320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	71	273	0	ENST00000342988.3:c.399_401del	p.Tyr133_Glu134delinsTer	p.Y133_E134delins*	ENST00000342988	NM_005359.5	133	tACGaa/taa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867348	45867348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	125	599	0	ENST00000391945.4:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000391945	NM_000400.3	282	cGg/cAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413214	139413214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	23	590	1	ENST00000277541.6:c.928G>A	p.Gly310Arg	p.G310R	ENST00000277541	NM_017617.3	310	Ggg/Agg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641050	117641050	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	101	420	0	ENST00000368508.3:c.5921A>G	p.Glu1974Gly	p.E1974G	ENST00000368508	NM_002944.2	1974	gAa/gGa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405159	139405159	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	24	588	0	ENST00000277541.6:c.2686C>T	p.Gln896Ter	p.Q896*	ENST00000277541	NM_017617.3	896	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578181	7578192	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCTCATAG	GGCGGCTCATAG	-			P-0039326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	241	536	1	ENST00000269305.4:c.657_668del	p.Tyr220_Pro223del	p.Y220_P223del	ENST00000269305	NM_001126112.2	219	ccCTATGAGCCGCCt/cct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092938	27093460	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTTTACAGGGATGGCAGCCAGCCCAGAGATGATGGGCCTTGGGGATGTAAAGTTAACTCCAGCCACCAAAATGAACAACAAGGCAGATGGGACACCCAAGACAGAATCCAAATCCAAGGTAGTGATTTTTGTCTTGACTCCTTTCAACTTTGTGTCCTATCTTTTTCAGTGATAGGAAGGAAAAAGAAAAGAGAGTGACAAGATCCCAGCCTTTTATGACACCGGACTAGATAGTCTCTGAAAAAGCTGCTGTTGCCTCCTCTTATCATGAAAGGTCCCAGAATAATAGCTCAGTGAGTTGGGTCTGGGTTGGTCTAAGGGATCCTGGTAAATAACATAATATTCTCACAGCTGTTTGTTATGGGGGAAATGCCAGACACTGCAGCATCAAACTCTCTGTACTGTTTGGCTGGTGCCCTCTGTGAAACCGTGCCTCCTATACTCAAGCATTGATAGATGGGGTGTGCCATGGGCAACTAGTTGCTCTTCTCTTCCTGAACCTTACTCATAGCAGCAGGAAT	TCTTTTACAGGGATGGCAGCCAGCCCAGAGATGATGGGCCTTGGGGATGTAAAGTTAACTCCAGCCACCAAAATGAACAACAAGGCAGATGGGACACCCAAGACAGAATCCAAATCCAAGGTAGTGATTTTTGTCTTGACTCCTTTCAACTTTGTGTCCTATCTTTTTCAGTGATAGGAAGGAAAAAGAAAAGAGAGTGACAAGATCCCAGCCTTTTATGACACCGGACTAGATAGTCTCTGAAAAAGCTGCTGTTGCCTCCTCTTATCATGAAAGGTCCCAGAATAATAGCTCAGTGAGTTGGGTCTGGGTTGGTCTAAGGGATCCTGGTAAATAACATAATATTCTCACAGCTGTTTGTTATGGGGGAAATGCCAGACACTGCAGCATCAAACTCTCTGTACTGTTTGGCTGGTGCCCTCTGTGAAACCGTGCCTCCTATACTCAAGCATTGATAGATGGGGTGTGCCATGGGCAACTAGTTGCTCTTCTCTTCCTGAACCTTACTCATAGCAGCAGGAAT	-			P-0039326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	60	290	0	ENST00000324856.7:c.2879-10_2988+403del		p.X960_splice	ENST00000324856	NM_006015.4	960																																																																															
PTEN	5728	MSKCC	GRCh37	10	89711882	89711883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0039326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	99	398	0	ENST00000371953.3:c.501_502insTT	p.Ile168LeufsTer16	p.I168Lfs*16	ENST00000371953	NM_000314.4	167	act/acTTt																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952554	17952554	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	163	490	0	ENST00000458235.1:c.879C>A	p.Cys293Ter	p.C293*	ENST00000458235	NM_000215.3	293	tgC/tgA																																																																														
CIC	23152	MSKCC	GRCh37	19	42791189	42791190	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGC			P-0039326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	195	614	0	ENST00000575354.2:c.251_254dup	p.Pro86AlafsTer9	p.P86Afs*9	ENST00000575354	NM_015125.3	83	-/CGGC																																																																														
NSD1	64324	MSKCC	GRCh37	5	176715908	176715929	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTGGGTGTAAGGCCAAAGGTA	CTTGGGTGTAAGGCCAAAGGTA	-			P-0039326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	45	462	0	ENST00000439151.2:c.6241_6258+4del		p.X2081_splice	ENST00000439151	NM_022455.4	2081																																																																															
TAP1	6890	MSKCC	GRCh37	6	32816523	32816524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	276	621	0	ENST00000354258.4:c.1651dup	p.Ser551LysfsTer83	p.S551Kfs*83	ENST00000354258	NM_000593.5	551	agt/aAgt																																																																														
MET	4233	MSKCC	GRCh37	7	116380936	116380962	+	inframe_deletion	In_Frame_Del	DEL	TGCAGACATTTCCAGTCCTGCAGTCAA	TGCAGACATTTCCAGTCCTGCAGTCAA	-			P-0039326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	170	487	0	ENST00000397752.3:c.1561_1587del	p.Arg521_Cys529del	p.R521_C529del	ENST00000397752	NM_000245.2	520	TGCAGACATTTCCAGTCCTGCAGTCAA/-																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969466	44969468	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0039326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	136	223	0	ENST00000377967.4:c.4150_4152del	p.Met1384del	p.M1384del	ENST00000377967	NM_021140.2	1383	cTGAtg/ctg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603119	48603120	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	A			P-0039326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	125	429	0	ENST00000342988.3:c.1420_1421delinsA	p.Ser474LysfsTer2	p.S474Kfs*2	ENST00000342988	NM_005359.5	474	TCa/Aa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073751	8073756	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	GCTGAC	GCTGAC	-			P-0039329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	165	331	0	ENST00000377482.5:c.903_908del	p.Trp301_Ala303delinsTer	p.W301_A303delins*	ENST00000377482	NM_018948.3	301	tgGTCAGCa/tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488233	56488233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	268	454	0	ENST00000267101.3:c.1752C>A	p.His584Gln	p.H584Q	ENST00000267101	NM_001982.3	584	caC/caA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	342	580	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	102	254	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
NBN	4683	MSKCC	GRCh37	8	90993052	90993052	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	254	386	0	ENST00000265433.3:c.390del	p.Ala131LeufsTer10	p.A131Lfs*10	ENST00000265433	NM_002485.4	130	caA/ca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0021525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	46	585	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	50	748	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
TET1	80312	MSKCC	GRCh37	10	70405078	70405078	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	71	772	0	ENST00000373644.4:c.2592T>A	p.Ser864Arg	p.S864R	ENST00000373644	NM_030625.2	864	agT/agA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151841892	151841892	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	117	615	0	ENST00000262189.6:c.14249A>C	p.Tyr4750Ser	p.Y4750S	ENST00000262189	NM_170606.2	4750	tAt/tCt																																																																														
EP300	2033	MSKCC	GRCh37	22	41573639	41573639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	73	779	0	ENST00000263253.7:c.5924G>T	p.Gly1975Val	p.G1975V	ENST00000263253	NM_001429.3	1975	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175884	112175884	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	30	371	0	ENST00000257430.4:c.4593del	p.Asn1531LysfsTer34	p.N1531Kfs*34	ENST00000257430	NM_000038.5	1531	aaT/aa																																																																														
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	174	383	1	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55																																																																															
GATA3	2625	MSKCC	GRCh37	10	8115712	8115715	+	frameshift_variant	Frame_Shift_Del	DEL	CCCT	CCCT	-			P-0021555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	120	453	0	ENST00000346208.3:c.1058_1061del	p.Pro353ArgfsTer3	p.P353Rfs*3	ENST00000346208		353	cCCCTg/cg																																																																														
RHEB	6009	MSKCC	GRCh37	7	151164299	151164299	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0021555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	247	659	1	ENST00000262187.5:c.463-2A>G		p.X155_splice	ENST00000262187	NM_005614.3	155																																																																															
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0021556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	153	439	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	190	684	0	ENST00000374080.3:c.130G>T	p.Gly44Cys	p.G44C	ENST00000374080		44	Ggt/Tgt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117802	70117803	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0021557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	56	607	1	ENST00000245479.2:c.271_272dup	p.Met91IlefsTer20	p.M91Ifs*20	ENST00000245479	NM_000346.3	90	-/AT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577109	7577109	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	110	792	0	ENST00000269305.4:c.829T>G	p.Cys277Gly	p.C277G	ENST00000269305	NM_001126112.2	277	Tgt/Ggt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0021561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	199	768	1	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg																																																																														
AR	367	MSKCC	GRCh37	X	66937371	66937371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	220	401	0	ENST00000374690.3:c.2225G>T	p.Trp742Leu	p.W742L	ENST00000374690	NM_000044.3	742	tGg/tTg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061288	38061288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	493	769	0	ENST00000250448.2:c.701C>T	p.Ser234Phe	p.S234F	ENST00000250448	NM_004496.3	234	tCc/tTc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	172	497	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	528	528	0				ENST00000310581	NM_198253.2																																																																																
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	191	499	1	ENST00000342988.3:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000342988	NM_005359.5	537	Gac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	183	401	0	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42794941	42794941	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	283	753	0	ENST00000575354.2:c.2021A>G	p.Asn674Ser	p.N674S	ENST00000575354	NM_015125.3	674	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178937461	178937461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	222	551	0	ENST00000263967.3:c.1849C>T	p.Arg617Trp	p.R617W	ENST00000263967	NM_006218.2	617	Cgg/Tgg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910882	114910882	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	170	485	0	ENST00000543371.1:c.1001C>A	p.Ser334Ter	p.S334*	ENST00000543371	NM_001198531.1	334	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578543	7578556	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGCAGGGGAGTACT	GGCAGGGGAGTACT	-			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	260	884	0	ENST00000269305.4:c.376-2_387del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
APC	324	MSKCC	GRCh37	5	112175609	112175609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	149	383	0	ENST00000257430.4:c.4319delC	p.Pro1440HisfsTer33	p.P1440Hfs*33	ENST00000257430	NM_000038.5	1440	Cca/ca																																																																														
PRDM1	639	MSKCC	GRCh37	6	106534450	106534450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	151	377	0	ENST00000369096.4:c.22A>C	p.Lys8Gln	p.K8Q	ENST00000369096	NM_001198.3	8	Aaa/Caa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6043414	6043414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	22	66	0	ENST00000265849.7:c.260A>G	p.His87Arg	p.H87R	ENST00000265849	NM_000535.5	87	cAt/cGt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89816231	89816231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	274	787	0	ENST00000389301.3:c.3146T>C	p.Phe1049Ser	p.F1049S	ENST00000389301	NM_000135.2	1049	tTt/tCt																																																																														
MED12	9968	MSKCC	GRCh37	X	70352340	70352343	+	missense_variant	Missense_Mutation	ONP	ACCT	ACCT	GCCG			P-0021564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	29	316	0	ENST00000374080.3:c.4367_4370delinsGCCG	p.His1456_Leu1457delinsArgArg	p.H1456_L1457delinsRR	ENST00000374080		1456	cACCTg/cGCCGg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226309	2226309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	46	786	1	ENST00000326181.6:c.1922G>A	p.Arg641His	p.R641H	ENST00000326181	NM_032271.2	641	cGt/cAt																																																																														
PARK2	5071	MSKCC	GRCh37	6	161969969	161969969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199657839		P-0021566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	57	665	1	ENST00000366898.1:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000366898	NM_004562.2	334	Cgc/Tgc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6439806	6439806	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	46	559	0	ENST00000356142.4:c.332A>C	p.Asn111Thr	p.N111T	ENST00000356142	NM_018890.3	111	aAt/aCt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357573	89357573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	136	614	0	ENST00000301030.4:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000301030	NM_001256183.1	82	cGg/cAg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940351	49940351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	54	719	0	ENST00000296474.3:c.692G>A	p.Gly231Asp	p.G231D	ENST00000296474	NM_002447.2	231	gGc/gAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144582	55144582	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	60	558	0	ENST00000257290.5:c.2056T>G	p.Leu686Val	p.L686V	ENST00000257290	NM_006206.4	686	Ttg/Gtg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	305	782	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	269	695	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060896	38061003	+	inframe_deletion	In_Frame_Del	DEL	CGGGCCCGGAGCTTATGGGGGGCGCAGTTGAGGAGGCTGGAGTCTTCAACTCCGAGGCGCCCCCTGTCGCCGTCGCCCCACTGTGGTCCAGAGTCTGGGGGCTGGCGG	CGGGCCCGGAGCTTATGGGGGGCGCAGTTGAGGAGGCTGGAGTCTTCAACTCCGAGGCGCCCCCTGTCGCCGTCGCCCCACTGTGGTCCAGAGTCTGGGGGCTGGCGG	-			P-0021603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	39	669	0	ENST00000250448.2:c.986_1093del	p.Ala329_Pro364del	p.A329_P364del	ENST00000250448	NM_004496.3	329	gCCGCCAGCCCCCAGACTCTGGACCACAGTGGGGCGACGGCGACAGGGGGCGCCTCGGAGTTGAAGACTCCAGCCTCCTCAACTGCGCCCCCCATAAGCTCCGGGCCCGgg/ggg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712892	43712893	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	280	713	0	ENST00000382044.4:c.4291dup	p.Ser1431PhefsTer3	p.S1431Ffs*3	ENST00000382044	NM_001141980.1	1431	tca/tTca																																																																														
ERF	2077	MSKCC	GRCh37	19	42753292	42753292	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	381	1136	2	ENST00000222329.4:c.972C>A	p.Tyr324Ter	p.Y324*	ENST00000222329	NM_006494.2	324	taC/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	681	865	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	221	769	0				ENST00000310581	NM_198253.2																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	172	366	1	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	1313	825	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844184	156844184	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199646180		P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	142	1052	1	ENST00000524377.1:c.1187C>T	p.Ser396Leu	p.S396L	ENST00000524377	NM_002529.3	396	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106330	27106330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	417	757	0	ENST00000324856.7:c.5941T>C	p.Cys1981Arg	p.C1981R	ENST00000324856	NM_006015.4	1981	Tgc/Cgc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94192663	94192663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	281	756	1	ENST00000323929.3:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000323929	NM_005591.3	471	Gag/Aag																																																																														
CBL	867	MSKCC	GRCh37	11	119156020	119156020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	333	950	0	ENST00000264033.4:c.1685G>C	p.Arg562Thr	p.R562T	ENST00000264033	NM_005188.3	562	aGa/aCa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865042	57865042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	506	1032	4	ENST00000228682.2:c.2519G>T	p.Gly840Val	p.G840V	ENST00000228682	NM_005269.2	840	gGg/gTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133225989	133225989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	254	877	0	ENST00000320574.5:c.3908G>T	p.Arg1303Met	p.R1303M	ENST00000320574	NM_006231.2	1303	aGg/aTg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618337	37618337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	376	376	0	ENST00000447079.4:c.13G>A	p.Glu5Lys	p.E5K	ENST00000447079	NM_015083.1	5	Gag/Aag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618380	37618380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	511	483	1	ENST00000447079.4:c.56G>C	p.Gly19Ala	p.G19A	ENST00000447079	NM_015083.1	19	gGa/gCa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866080	37866080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2221	129	855	0	ENST00000269571.5:c.589C>G	p.Pro197Ala	p.P197A	ENST00000269571		197	Ccg/Gcg																																																																														
EP300	2033	MSKCC	GRCh37	22	41547966	41547966	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	291	774	2	ENST00000263253.7:c.2947G>T	p.Glu983Ter	p.E983*	ENST00000263253	NM_001429.3	983	Gaa/Taa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38949911	38949911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	223	490	0	ENST00000357387.3:c.4039C>T	p.His1347Tyr	p.H1347Y	ENST00000357387	NM_152756.3	1347	Cac/Tac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945148	44945148	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	443	771	0	ENST00000377967.4:c.3472A>T	p.Asn1158Tyr	p.N1158Y	ENST00000377967	NM_021140.2	1158	Aat/Tat																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	49	704	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	89	945	1	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	42040746	42041483	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTGTCTTAAAAAATATTATGAATACTTTTTTTTCCTACGTGTGTTAAAGGGGAATTTGGGTACCATGTTTCCATTTCCTGTTTTTCAGAAAATGCTGCTCAAATTCCAGTGGCTACTCCACAGGTCTCTCCTAACACAGTGAAACGTGCTGGACCTCGATTGTTGTTGATTCCAGTGCAGCAGGGTTCTCCTACTCTTAGACCTGTCTCAAACACACAACTTCAGGGACATCGGATGGTCTTGCAGCCTGTTAGGAGTCCAAGTGGAATGAACTTATTCAGGCACCCTAATGGGCAGATTGTCCAGCTTCTACCTTTGCATCAGCTTCGAGGCTCTAATACCCAGCCCAACTTACAGCCTGTCATGTTTCGGAACCCAGGTATAAAGTTCTTTTTTATGAACTTTTCTTTTGTTGAATCACTTGGCCATATGGTATGTTAATACACCAAGATTGTTTTTCTTCATCTCTTAAGAGTTACTTTTCCAAAAAGAAAAGCAAACATTGGAAGTCTTGATATGGGCAGTCATGATTTAAAAATTTCTCTCTTATTTTTTAAACCAGGGTCTGTGATGGGAATCCGGTTACCTGCTCCTTCCAAACCCTCTGAGACTCCGCCATCTTCCACTTCGTCCTCTGCTTTCTCTGTCATGAATCCTGTAATTCAAGCTGTTGGGTCTTCTTCAGCAGTGAATGTTATCACTCAGGCACCATCATTGCTTTCCTCTGGAGCTAGTTT	TGTGTCTTAAAAAATATTATGAATACTTTTTTTTCCTACGTGTGTTAAAGGGGAATTTGGGTACCATGTTTCCATTTCCTGTTTTTCAGAAAATGCTGCTCAAATTCCAGTGGCTACTCCACAGGTCTCTCCTAACACAGTGAAACGTGCTGGACCTCGATTGTTGTTGATTCCAGTGCAGCAGGGTTCTCCTACTCTTAGACCTGTCTCAAACACACAACTTCAGGGACATCGGATGGTCTTGCAGCCTGTTAGGAGTCCAAGTGGAATGAACTTATTCAGGCACCCTAATGGGCAGATTGTCCAGCTTCTACCTTTGCATCAGCTTCGAGGCTCTAATACCCAGCCCAACTTACAGCCTGTCATGTTTCGGAACCCAGGTATAAAGTTCTTTTTTATGAACTTTTCTTTTGTTGAATCACTTGGCCATATGGTATGTTAATACACCAAGATTGTTTTTCTTCATCTCTTAAGAGTTACTTTTCCAAAAAGAAAAGCAAACATTGGAAGTCTTGATATGGGCAGTCATGATTTAAAAATTTCTCTCTTATTTTTTAAACCAGGGTCTGTGATGGGAATCCGGTTACCTGCTCCTTCCAAACCCTCTGAGACTCCGCCATCTTCCACTTCGTCCTCTGCTTTCTCTGTCATGAATCCTGTAATTCAAGCTGTTGGGTCTTCTTCAGCAGTGAATGTTATCACTCAGGCACCATCATTGCTTTCCTCTGGAGCTAGTTT	-			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	18	109	0	ENST00000219905.7:c.5213-82_5685del		p.X1738_splice	ENST00000219905	NM_001164273.1	1738																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641323	23641323	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	53	1008	0	ENST00000261584.4:c.2152A>T	p.Arg718Trp	p.R718W	ENST00000261584	NM_024675.3	718	Agg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29496990	29496990	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	212	546	0	ENST00000358273.4:c.561T>A	p.Cys187Ter	p.C187*	ENST00000358273	NM_001042492.2	187	tgT/tgA																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868180	37868180	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	31	885	0	ENST00000269571.5:c.902-1G>C		p.X301_splice	ENST00000269571		301																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11105628	11105628	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	26	1028	0	ENST00000344626.4:c.1544A>C	p.Gln515Pro	p.Q515P	ENST00000344626	NM_003072.3	515	cAg/cCg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965411	25965411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	90	972	1	ENST00000435504.4:c.3795A>T	p.Leu1265Phe	p.L1265F	ENST00000435504		1265	ttA/ttT																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198260818	198260818	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	53	832	0	ENST00000335508.6:c.3501T>A	p.Tyr1167Ter	p.Y1167*	ENST00000335508	NM_012433.2	1167	taT/taA																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62320850	62320866	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTAGGCCAGCGAGGGG	CCTAGGCCAGCGAGGGG	AGGGAGGGA			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	44	1139	3	ENST00000508582.2:c.1951-5_1962delinsAGGGAGGGA		p.X651_splice	ENST00000508582		651																																																																															
SETD2	29072	MSKCC	GRCh37	3	47084162	47084162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	51	738	0	ENST00000409792.3:c.7127T>C	p.Leu2376Ser	p.L2376S	ENST00000409792	NM_014159.6	2376	tTg/tCg																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186505033	186505033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	22	455	0	ENST00000323963.5:c.889G>C	p.Asp297His	p.D297H	ENST00000323963		297	Gac/Cac																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289203	33289203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	35	674	0	ENST00000374542.5:c.349C>T	p.Arg117Trp	p.R117W	ENST00000374542	NM_001141970.1	117	Cgg/Tgg																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145472	58145474	+	missense_variant	Missense_Mutation	ONP	GCC	GCC	CCA			P-0021623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	75	670	0	ENST00000257904.6:c.27_29delinsTGG	p.Ala10Gly	p.A10G	ENST00000257904	NM_000075.3	9	gtGGCt/gtTGGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524129	187524129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	114	651	0	ENST00000441802.2:c.11410G>A	p.Glu3804Lys	p.E3804K	ENST00000441802	NM_005245.3	3804	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3790463	3790463	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	361	542	0	ENST00000262367.5:c.4070T>G	p.Val1357Gly	p.V1357G	ENST00000262367	NM_004380.2	1357	gTt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	929	598	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631323	117631323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	109	342	0	ENST00000368508.3:c.6355G>A	p.Gly2119Arg	p.G2119R	ENST00000368508	NM_002944.2	2119	Ggg/Agg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087417	27087426	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGATTTC	CAGGGATTTC	-			P-0039087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	86	629	0	ENST00000324856.7:c.1994_2003del	p.Gly665AlafsTer74	p.G665Afs*74	ENST00000324856	NM_006015.4	664	tCAGGGATTTCc/tc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143181696	143181696	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	46	334	0	ENST00000262992.4:c.637A>T	p.Thr213Ser	p.T213S	ENST00000262992	NM_001101669.1	213	Aca/Tca																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560257	95560257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	100	318	0	ENST00000343455.3:c.5332G>C	p.Glu1778Gln	p.E1778Q	ENST00000343455	NM_177438.2	1778	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	383	729	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260165	16260165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	194	524	0	ENST00000375759.3:c.7430C>T	p.Ala2477Val	p.A2477V	ENST00000375759	NM_015001.2	2477	gCa/gTa																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536741	120536741	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0039094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	143	629	0	ENST00000229340.5:c.353-2A>T		p.X118_splice	ENST00000229340	NM_006861.6	118																																																																															
BRCA2	675	MSKCC	GRCh37	13	32912648	32912660	+	frameshift_variant	Frame_Shift_Del	DEL	GATTTAACTTTTT	GATTTAACTTTTT	-			P-0039094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	296	417	0	ENST00000380152.3:c.4156_4168del	p.Asp1386TrpfsTer20	p.D1386Wfs*20	ENST00000380152		1386	GATTTAACTTTTTtg/tg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117550	70117551	+	missense_variant	Missense_Mutation	DNP	CT	CT	TG			P-0039094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	125	570	1	ENST00000245479.2:c.18_19delinsTG	p.Phe7Val	p.F7V	ENST00000245479	NM_000346.3	6	ccCTtc/ccTGtc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212173	5212173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	175	782	0	ENST00000357368.4:c.4858C>T	p.His1620Tyr	p.H1620Y	ENST00000357368	NM_002850.3	1620	Cac/Tac																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130507	29130507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	164	551	0	ENST00000328354.6:c.203C>G	p.Thr68Ser	p.T68S	ENST00000328354	NM_007194.3	68	aCt/aGt																																																																														
SDHA	6389	MSKCC	GRCh37	5	226049	226049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	40	90	0	ENST00000264932.6:c.508C>A	p.Gln170Lys	p.Q170K	ENST00000264932	NM_004168.2	170	Cag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637666	176637666	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs142657029		P-0039094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	154	579	0	ENST00000439151.2:c.2266A>G	p.Asn756Asp	p.N756D	ENST00000439151	NM_022455.4	756	Aac/Gac																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023262	150023262	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0039094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	78	306	0	ENST00000253339.5:c.1A>C	p.Met1?	p.M1?	ENST00000253339		1	Atg/Ctg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117551	70117551	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	122	571	0	ENST00000245479.2:c.19T>G	p.Phe7Val	p.F7V	ENST00000245479	NM_000346.3	7	Ttc/Gtc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	229	613	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262301	16262301	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	54	320	2	ENST00000375759.3:c.9566A>T	p.Tyr3189Phe	p.Y3189F	ENST00000375759	NM_015001.2	3189	tAt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420049	49420049	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	259	634	0	ENST00000301067.7:c.15700G>T	p.Glu5234Ter	p.E5234*	ENST00000301067	NM_003482.3	5234	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420362	49420362	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	243	715	0	ENST00000301067.7:c.15387G>C	p.Lys5129Asn	p.K5129N	ENST00000301067	NM_003482.3	5129	aaG/aaC																																																																														
FLT3	2322	MSKCC	GRCh37	13	28626729	28626729	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	83	478	1	ENST00000241453.7:c.567del	p.Pro190GlnfsTer40	p.P190Qfs*40	ENST00000241453	NM_004119.2	189	gtT/gt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068926	30068926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	105	590	0	ENST00000331968.5:c.2003A>T	p.Glu668Val	p.E668V	ENST00000331968	NM_002742.2	668	gAa/gTa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639366	3639366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	159	864	0	ENST00000294008.3:c.4273G>A	p.Asp1425Asn	p.D1425N	ENST00000294008	NM_032444.2	1425	Gac/Aac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032220	10032220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	114	677	0	ENST00000330684.3:c.603G>T	p.Gln201His	p.Q201H	ENST00000330684	NM_001134407.1	201	caG/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	429	796	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029445	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	178	410	0	ENST00000268712.3:c.1585del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	529	Gaa/aa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40461115	40461115	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	242	393	0	ENST00000345506.4:c.2113G>C	p.Glu705Gln	p.E705Q	ENST00000345506	NM_003152.3	705	Gag/Cag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41201212	41201212	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	112	537	0	ENST00000357654.3:c.5333-1G>C		p.X1778_splice	ENST00000357654	NM_007294.3	1778																																																																															
MSI2	124540	MSKCC	GRCh37	17	55607061	55607061	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	75	501	0	ENST00000284073.2:c.430G>C	p.Asp144His	p.D144H	ENST00000284073	NM_138962.2	144	Gat/Cat																																																																														
MSI2	124540	MSKCC	GRCh37	17	55754356	55754356	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	123	640	0	ENST00000284073.2:c.954G>C	p.Leu318Phe	p.L318F	ENST00000284073	NM_138962.2	318	ttG/ttC																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117569	70117569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	407	736	2	ENST00000245479.2:c.37G>A	p.Glu13Lys	p.E13K	ENST00000245479	NM_000346.3	13	Gag/Aag																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78865623	78865623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	234	427	0	ENST00000306801.3:c.2087C>G	p.Ser696Cys	p.S696C	ENST00000306801	NM_020761.2	696	tCt/tGt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265047	10265047	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	89	588	0	ENST00000340748.4:c.1893C>G	p.Phe631Leu	p.F631L	ENST00000340748		631	ttC/ttG																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11113708	11113708	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	114	591	0	ENST00000344626.4:c.1816C>G	p.Leu606Val	p.L606V	ENST00000344626	NM_003072.3	606	Ctg/Gtg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144143	11144143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	425	721	0	ENST00000344626.4:c.3724G>A	p.Glu1242Lys	p.E1242K	ENST00000344626	NM_003072.3	1242	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281224	15281224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	197	944	0	ENST00000263388.2:c.5032G>A	p.Glu1678Lys	p.E1678K	ENST00000263388	NM_000435.2	1678	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228592	36228592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	325	883	1	ENST00000222270.7:c.7606G>A	p.Glu2536Lys	p.E2536K	ENST00000222270	NM_014727.1	2536	Gag/Aag																																																																														
ERF	2077	MSKCC	GRCh37	19	42753329	42753329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	388	1018	0	ENST00000222329.4:c.935G>T	p.Arg312Leu	p.R312L	ENST00000222329	NM_006494.2	312	cGg/cTg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753334	42753334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	206	1015	1	ENST00000222329.4:c.930G>A	p.Met310Ile	p.M310I	ENST00000222329	NM_006494.2	310	atG/atA																																																																														
ALK	238	MSKCC	GRCh37	2	29432730	29432730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	69	528	0	ENST00000389048.3:c.3758G>A	p.Arg1253Lys	p.R1253K	ENST00000389048	NM_004304.4	1253	aGa/aAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033615	48033615	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	65	419	0	ENST00000234420.5:c.3826G>T	p.Glu1276Ter	p.E1276*	ENST00000234420	NM_000179.2	1276	Gaa/Taa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561492	9561492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	89	509	0	ENST00000353224.5:c.290C>G	p.Ser97Cys	p.S97C	ENST00000353224	NM_177990.2	97	tCc/tGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41513766	41513766	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	110	617	0	ENST00000263253.7:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000263253	NM_001429.3	224	Cag/Tag																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461492	138461492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	99	566	0	ENST00000289153.2:c.529C>G	p.Pro177Ala	p.P177A	ENST00000289153	NM_006219.2	177	Cca/Gca																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665358	138665358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	337	836	0	ENST00000330315.3:c.207G>C	p.Glu69Asp	p.E69D	ENST00000330315	NM_023067.3	69	gaG/gaC																																																																														
KIT	3815	MSKCC	GRCh37	4	55594055	55594055	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	97	449	0	ENST00000288135.5:c.1841C>G	p.Ser614Ter	p.S614*	ENST00000288135	NM_000222.2	614	tCa/tGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	125	460	0				ENST00000310581	NM_198253.2																																																																																
LATS1	9113	MSKCC	GRCh37	6	150001124	150001124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	58	474	0	ENST00000253339.5:c.2480G>C	p.Arg827Thr	p.R827T	ENST00000253339		827	aGa/aCa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099496	157099496	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	79	361	0	ENST00000346085.5:c.434del	p.Gly145AlafsTer35	p.G145Afs*35	ENST00000346085	NM_020732.3	145	Ggc/gc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2951926	2951926	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	116	483	0	ENST00000396946.4:c.3024C>G	p.Ile1008Met	p.I1008M	ENST00000396946	NM_032415.4	1008	atC/atG																																																																														
BRAF	673	MSKCC	GRCh37	7	140449173	140449173	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	15	284	0	ENST00000288602.6:c.1906C>T	p.Gln636Ter	p.Q636*	ENST00000288602	NM_004333.4	636	Cag/Tag																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205403	38205403	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	122	748	0	ENST00000317025.8:c.287C>G	p.Ser96Ter	p.S96*	ENST00000317025	NM_023034.1	96	tCa/tGa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069114	5069220	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTAAAGATCTTTTGAATTGTTACCAGATGGAAACTGTTCGCTCAGACAATATAATTTTCCAGTTTACTAAATGCTGTCCCCCAAAGCCAAAAGGTAAGATAATTT	TCTTAAAGATCTTTTGAATTGTTACCAGATGGAAACTGTTCGCTCAGACAATATAATTTTCCAGTTTACTAAATGCTGTCCCCCAAAGCCAAAAGGTAAGATAATTT	-			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	53	458	0	ENST00000381652.3:c.1422_1513+15del		p.X474_splice	ENST00000381652	NM_004972.3	474																																																																															
TEK	7010	MSKCC	GRCh37	9	27169511	27169511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	465	519	0	ENST00000380036.4:c.512C>A	p.Pro171His	p.P171H	ENST00000380036	NM_000459.3	171	cCt/cAt																																																																														
BTK	695	MSKCC	GRCh37	X	100617172	100617172	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	119	334	0	ENST00000308731.7:c.577G>C	p.Glu193Gln	p.E193Q	ENST00000308731	NM_000061.2	193	Gag/Cag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	18	238	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	23	234	1	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858403	9858403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	33	322	0	ENST00000330684.3:c.2998G>A	p.Val1000Met	p.V1000M	ENST00000330684	NM_001134407.1	1000	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0039211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	36	315	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
FOXP1	27086	MSKCC	GRCh37	3	71102861	71102861	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	27	223	0	ENST00000318789.4:c.346del	p.Leu116SerfsTer6	p.L116Sfs*6	ENST00000318789	NM_032682.5	116	Ctc/tc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0039218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	173	270	0	ENST00000371953.3:c.801+1G>T		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	321	621	2	ENST00000269305.4:c.737T>G	p.Met246Arg	p.M246R	ENST00000269305	NM_001126112.2	246	aTg/aGg																																																																														
CIC	23152	MSKCC	GRCh37	19	42791339	42791339	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	84	726	0	ENST00000575354.2:c.404del	p.Pro135GlnfsTer70	p.P135Qfs*70	ENST00000575354	NM_015125.3	133	ggC/gg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692805	89692809	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCT	CAGCT	-			P-0039218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	149	261	0	ENST00000371953.3:c.289_293del	p.Gln97ArgfsTer8	p.Q97Rfs*8	ENST00000371953	NM_000314.4	97	CAGCTa/a																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	164	583	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
VHL	7428	MSKCC	GRCh37	3	10183755	10183757	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0039220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	250	743	0	ENST00000256474.2:c.227_229delTCT	p.Phe76del	p.F76del	ENST00000256474	NM_000551.3	75	aTCTtc/atc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158239	47158242	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0039220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	49	266	0	ENST00000409792.3:c.4457_4460del	p.Lys1486ArgfsTer28	p.K1486Rfs*28	ENST00000409792	NM_014159.6	1486	aAGAAg/ag																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195738	102195738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	21	333	0	ENST00000263464.3:c.498G>A	p.Met166Ile	p.M166I	ENST00000263464	NM_001165.4	166	atG/atA																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702566	52702566	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	72	423	0	ENST00000394830.3:c.332del	p.Leu111CysfsTer2	p.L111Cfs*2	ENST00000394830	NM_018313.4	111	tTg/tg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287287	33287287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	199	501	0	ENST00000374542.5:c.1810G>A	p.Gly604Arg	p.G604R	ENST00000374542	NM_001141970.1	604	Gga/Aga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151868401	151868401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	110	487	0	ENST00000262189.6:c.9401C>T	p.Thr3134Ile	p.T3134I	ENST00000262189	NM_170606.2	3134	aCt/aTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0039223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	43	477	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
PGR	5241	MSKCC	GRCh37	11	100933432	100933432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	37	375	1	ENST00000325455.5:c.1958C>A	p.Ala653Asp	p.A653D	ENST00000325455	NM_001202474.3	653	gCt/gAt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163913	152163913	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	28	442	0	ENST00000206249.3:c.634A>T	p.Ser212Cys	p.S212C	ENST00000206249	NM_000125.3	212	Agt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	158	670	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952120	178952120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	95	319	0	ENST00000263967.3:c.3175T>C	p.Phe1059Leu	p.F1059L	ENST00000263967	NM_006218.2	1059	Ttc/Ctc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0039241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	222	501	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228288	53228288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	94	617	1	ENST00000375401.3:c.2114G>A	p.Arg705His	p.R705H	ENST00000375401	NM_004187.3	705	cGc/cAc																																																																														
ALK	238	MSKCC	GRCh37	2	29456502	29456502	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	184	587	0	ENST00000389048.3:c.2416C>G	p.Arg806Gly	p.R806G	ENST00000389048	NM_004304.4	806	Cgt/Ggt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437055	110437055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	90	79	0	ENST00000375856.3:c.1346C>T	p.Ser449Leu	p.S449L	ENST00000375856	NM_003749.2	449	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578226	7578249	+	inframe_deletion	In_Frame_Del	DEL	TCATCCAAATACTCCACACGCAAA	TCATCCAAATACTCCACACGCAAA	-			P-0039242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	451	640	0	ENST00000269305.4:c.600_623del	p.Leu201_Asp208del	p.L201_D208del	ENST00000269305	NM_001126112.2	200	aaTTTGCGTGTGGAGTATTTGGATGAc/aac																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40457698	40457698	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	166	509	0	ENST00000345506.4:c.1451G>A	p.Trp484Ter	p.W484*	ENST00000345506	NM_003152.3	484	tGg/tAg																																																																														
MSI2	124540	MSKCC	GRCh37	17	55729466	55729466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	399	632	0	ENST00000284073.2:c.734C>A	p.Pro245Gln	p.P245Q	ENST00000284073	NM_138962.2	245	cCa/cAa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004964	150004970	+	frameshift_variant	Frame_Shift_Del	DEL	GTTCCAT	GTTCCAT	-			P-0039242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	147	325	0	ENST00000253339.5:c.1255_1261del	p.Met419TyrfsTer40	p.M419Yfs*40	ENST00000253339		419	ATGGAACta/ta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	14	593	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	111	657	1	ENST00000269305.4:c.273del	p.Trp91CysfsTer32	p.W91Cfs*32	ENST00000269305	NM_001126112.2	91	tgG/tg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470611	25470611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	201	548	0	ENST00000264709.3:c.863G>A	p.Arg288Gln	p.R288Q	ENST00000264709	NM_175629.2	288	cGg/cAg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895635	28895635	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	27	440	0	ENST00000282397.4:c.3139A>T	p.Ile1047Phe	p.I1047F	ENST00000282397	NM_002019.4	1047	Att/Ttt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618805	37618806	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0039245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	94	549	0	ENST00000447079.4:c.482dup	p.Tyr161Ter	p.Y161*	ENST00000447079	NM_015083.1	161	tat/tAat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222941	36222941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1569	89	835	0	ENST00000222270.7:c.5570C>A	p.Pro1857His	p.P1857H	ENST00000222270	NM_014727.1	1857	cCc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	62	302	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0039248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	219	648	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	28	166	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76763832	76763832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	39	400	1	ENST00000373344.5:c.7476G>A	p.Met2492Ile	p.M2492I	ENST00000373344	NM_000489.3	2492	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	111	586	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	377	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602646	10602646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	130	687	0	ENST00000171111.5:c.932A>G	p.His311Arg	p.H311R	ENST00000171111	NM_203500.1	311	cAc/cGc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221996	1221996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	117	604	0	ENST00000326873.7:c.911G>C	p.Arg304Pro	p.R304P	ENST00000326873	NM_000455.4	304	cGg/cCg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69012034	69012034	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	42	499	0	ENST00000288368.4:c.2671G>C	p.Glu891Gln	p.E891Q	ENST00000288368	NM_024870.2	891	Gaa/Caa																																																																														
MED12	9968	MSKCC	GRCh37	X	70360684	70360684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	13	140	0	ENST00000374080.3:c.6244C>A	p.Gln2082Lys	p.Q2082K	ENST00000374080		2082	Cag/Aag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0039265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	27	430	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	372	334	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0039270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	253	489	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	255	484	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494587	2494587	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	181	470	0	ENST00000355716.4:c.727C>T	p.Arg243Trp	p.R243W	ENST00000355716	NM_003820.2	243	Cgg/Tgg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99160343	99160343	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	264	291	0	ENST00000074304.5:c.822del	p.Cys275ValfsTer35	p.C275Vfs*35	ENST00000074304	NM_001134224.1	274	gtG/gt																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321555	62321555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	216	567	0	ENST00000508582.2:c.2329G>C	p.Glu777Gln	p.E777Q	ENST00000508582		777	Gag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	10	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584593	48584593	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	27	319	0	ENST00000342988.3:c.766C>T	p.Gln256Ter	p.Q256*	ENST00000342988	NM_005359.5	256	Cag/Tag																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14300947	14300947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	18	280	0	ENST00000256196.4:c.551C>G	p.Pro184Arg	p.P184R	ENST00000256196		184	cCt/cGt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464578	25464578	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0039271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	26	444	0	ENST00000264709.3:c.1937-2A>T		p.X646_splice	ENST00000264709	NM_175629.2	646																																																																															
FLT1	2321	MSKCC	GRCh37	13	28919595	28919595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	176	471	0	ENST00000282397.4:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000282397	NM_002019.4	781	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579707	7579707	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	270	474	0	ENST00000269305.4:c.89del	p.Asn30ThrfsTer14	p.N30Tfs*14	ENST00000269305	NM_001126112.2	30	aAc/ac																																																																														
NF1	4763	MSKCC	GRCh37	17	29554567	29554567	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	103	222	0	ENST00000358273.4:c.2352G>A	p.Trp784Ter	p.W784*	ENST00000358273	NM_001042492.2	784	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578485	7578487	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0039300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	325	599	0	ENST00000269305.4:c.443_445del	p.Asp148_Ser149delinsAla	p.D148_S149delinsA	ENST00000269305	NM_001126112.2	148	gATTcc/gcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	55	294	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0039304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	25	371	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110584	4110584	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	142	637	0	ENST00000262948.5:c.373T>A	p.Cys125Ser	p.C125S	ENST00000262948	NM_030662.3	125	Tgc/Agc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	34	457	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
FANCC	2176	MSKCC	GRCh37	9	97869536	97869536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1800367		P-0039304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	30	461	0	ENST00000289081.3:c.1345G>A	p.Val449Met	p.V449M	ENST00000289081	NM_000136.2	449	Gtg/Atg																																																																														
TET1	80312	MSKCC	GRCh37	10	70406146	70406146	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	49	561	0	ENST00000373644.4:c.3660G>A	p.Trp1220Ter	p.W1220*	ENST00000373644	NM_030625.2	1220	tgG/tgA																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117531	4117575	+	inframe_deletion	In_Frame_Del	DEL	CTTGGCTTTCTGGGTGAGAAAGGCTTCCAGCCGCTTCTTCTGCTG	CTTGGCTTTCTGGGTGAGAAAGGCTTCCAGCCGCTTCTTCTGCTG	-			P-0039304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	36	242	0	ENST00000262948.5:c.145_189del	p.Gln49_Lys63del	p.Q49_K63del	ENST00000262948	NM_030662.3	49	CAGCAGAAGAAGCGGCTGGAAGCCTTTCTCACCCAGAAAGCCAAG/-																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266060	41266114	+	protein_altering_variant	In_Frame_Del	DEL	AGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCT	AGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCT	TTCC			P-0039304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	30	324	2	ENST00000349496.5:c.57_111delinsTTCC	p.Lys19_His36delinsAsn	p.K19_H36delinsN	ENST00000349496	NM_001904.3	19	aaAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCT/aaTTCC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952003	178952003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	40	343	0	ENST00000263967.3:c.3058G>T	p.Ala1020Ser	p.A1020S	ENST00000263967	NM_006218.2	1020	Gca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	133	306	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0039306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	183	309	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0039306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	168	360	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118370116	118370116	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	137	249	0	ENST00000534358.1:c.6060A>C	p.Glu2020Asp	p.E2020D	ENST00000534358	NM_005933.3	2020	gaA/gaC																																																																														
NSD1	64324	MSKCC	GRCh37	5	176636799	176636799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	125	379	0	ENST00000439151.2:c.1399G>A	p.Glu467Lys	p.E467K	ENST00000439151	NM_022455.4	467	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	82	272	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918582	44918582	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	23	179	0	ENST00000377967.4:c.1065G>A	p.Trp355Ter	p.W355*	ENST00000377967	NM_021140.2	355	tgG/tgA																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	139	519	0	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022535	12022535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	132	469	1	ENST00000396373.4:c.641C>T	p.Pro214Leu	p.P214L	ENST00000396373	NM_001987.4	214	cCg/cTg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285754	87285754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	107	398	2	ENST00000277120.3:c.91G>A	p.Ala31Thr	p.A31T	ENST00000277120		31	Gcc/Acc																																																																														
BARD1	580	MSKCC	GRCh37	2	215595140	215595140	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	51	240	0	ENST00000260947.4:c.1996C>T	p.Gln666Ter	p.Q666*	ENST00000260947	NM_000465.2	666	Cag/Tag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715688	30715688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	32	269	0	ENST00000359013.4:c.1421C>T	p.Ser474Phe	p.S474F	ENST00000359013	NM_001024847.2	474	tCc/tTc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324203	31324203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	59	271	0	ENST00000412585.2:c.360G>C	p.Gln120His	p.Q120H	ENST00000412585	NM_005514.6	120	caG/caC																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341742	8341742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	96	372	0	ENST00000356435.5:c.4898C>A	p.Thr1633Lys	p.T1633K	ENST00000356435		1633	aCa/aAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0039138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	131	618	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0039138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	274	658	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11924238	11924238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	11	21	0	ENST00000353533.5:c.35C>T	p.Ser12Phe	p.S12F	ENST00000353533	NM_003010.3	12	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0039138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	215	561	0				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49436054	49436054	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	215	632	0	ENST00000301067.7:c.5927C>G	p.Ser1976Ter	p.S1976*	ENST00000301067	NM_003482.3	1976	tCa/tGa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982373	201982373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	387	846	0	ENST00000359651.3:c.752G>T	p.Arg251Leu	p.R251L	ENST00000359651		251	cGa/cTa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983035	201983035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	350	856	0	ENST00000359651.3:c.884G>C	p.Trp295Ser	p.W295S	ENST00000359651		295	tGg/tCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432069	49432069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	345	880	0	ENST00000301067.7:c.9070G>A	p.Glu3024Lys	p.E3024K	ENST00000301067	NM_003482.3	3024	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29562736	29562736	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	201	476	0	ENST00000358273.4:c.3816G>C	p.Gln1272His	p.Q1272H	ENST00000358273	NM_001042492.2	1272	caG/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	63	492	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	174	976	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	71	514	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770587	40770587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	49	579	0	ENST00000373198.4:c.2795G>A	p.Arg932His	p.R932H	ENST00000373198	NM_133170.3	932	cGc/cAc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3121008	3121008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	68	924	1	ENST00000078429.4:c.911C>T	p.Ala304Val	p.A304V	ENST00000078429	NM_002067.2	304	gCg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	116	775	0	ENST00000304494.5:c.247del	p.His83ThrfsTer63	p.H83Tfs*63	ENST00000304494	NM_000077.4	83	Cac/ac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	116	775	0	ENST00000304494.5:c.247del	p.His83ThrfsTer63	p.H83Tfs*63	ENST00000304494	NM_000077.4	83	Cac/ac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	116	775	0	ENST00000304494.5:c.247del	p.His83ThrfsTer63	p.H83Tfs*63	ENST00000304494	NM_000077.4	83	Cac/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0039144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	135	399	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577123	7577124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	133	759	0	ENST00000269305.4:c.814dup	p.Val272GlyfsTer34	p.V272Gfs*34	ENST00000269305	NM_001126112.2	272	gtg/gGtg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907035	101907035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	48	298	0	ENST00000374994.4:c.995G>C	p.Arg332Thr	p.R332T	ENST00000374994	NM_004612.2	332	aGa/aCa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	300	635	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241672	55241672	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	367	848	0	ENST00000275493.2:c.2120T>G	p.Leu707Trp	p.L707W	ENST00000275493	NM_005228.3	707	tTg/tGg																																																																														
RB1	5925	MSKCC	GRCh37	13	48919239	48919239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	43	181	0	ENST00000267163.4:c.404T>C	p.Leu135Pro	p.L135P	ENST00000267163	NM_000321.2	135	cTa/cCa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164484	47164484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	76	390	0	ENST00000409792.3:c.1642C>T	p.His548Tyr	p.H548Y	ENST00000409792	NM_014159.6	548	Cat/Tat																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209319	98209319	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56161606		P-0039146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	55	883	0	ENST00000331920.6:c.4219G>A	p.Gly1407Ser	p.G1407S	ENST00000331920	NM_000264.3	1407	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	139	336	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	20	492	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	38	691	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	308	764	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
APC	324	MSKCC	GRCh37	5	112174241	112174241	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	94	392	1	ENST00000257430.4:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000257430	NM_000038.5	984	Gaa/Taa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440716	56440716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	30	590	0	ENST00000407977.2:c.502G>A	p.Asp168Asn	p.D168N	ENST00000407977		168	Gac/Aac																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724277	112724277	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	167	528	0	ENST00000369452.4:c.161A>T	p.Lys54Met	p.K54M	ENST00000369452	NM_007373.3	54	aAg/aTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867155	45867155	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	283	777	0	ENST00000391945.4:c.964T>C	p.Ser322Pro	p.S322P	ENST00000391945	NM_000400.3	322	Tcc/Ccc																																																																														
APC	324	MSKCC	GRCh37	5	112175572	112175573	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGACAAACCATGCCACCAAGCA			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	73	370	0	ENST00000257430.4:c.4283_4304dup	p.Ser1436ThrfsTer9	p.S1436Tfs*9	ENST00000257430	NM_000038.5	1427	-/GGACAAACCATGCCACCAAGCA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879610	151879610	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	111	296	0	ENST00000262189.6:c.5335G>T	p.Glu1779Ter	p.E1779*	ENST00000262189	NM_170606.2	1779	Gag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151896362	151896362	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0039147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	171	381	0	ENST00000262189.6:c.4273+2T>G		p.X1425_splice	ENST00000262189	NM_170606.2	1425																																																																															
TSHR	7253	MSKCC	GRCh37	14	81574753	81574753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	23	311	0	ENST00000298171.2:c.649G>A	p.Asp217Asn	p.D217N	ENST00000298171	NM_000369.2	217	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	240	945	0	ENST00000269305.4:c.421del	p.Cys141AlafsTer29	p.C141Afs*29	ENST00000269305	NM_001126112.2	141	Tgc/gc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244421	5244421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	43	857	2	ENST00000357368.4:c.1061C>T	p.Ser354Leu	p.S354L	ENST00000357368	NM_002850.3	354	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713398	40713398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	33	753	1	ENST00000373198.4:c.4117C>A	p.Leu1373Ile	p.L1373I	ENST00000373198	NM_133170.3	1373	Ctc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112137041	112137042	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	73	495	0	ENST00000257430.4:c.797_798dup	p.Gly267TrpfsTer27	p.G267Wfs*27	ENST00000257430	NM_000038.5	265	-/GT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401203	139401203	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	142	830	1	ENST00000277541.6:c.3866A>G	p.Asn1289Ser	p.N1289S	ENST00000277541	NM_017617.3	1289	aAt/aGt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123200089	123200089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	90	284	1	ENST00000218089.9:c.2161G>A	p.Glu721Lys	p.E721K	ENST00000218089	NM_001042749.1	721	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0039177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	35	219	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	54	327	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	100	626	0	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741443	145741443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	64	750	1	ENST00000428558.2:c.1060G>A	p.Val354Ile	p.V354I	ENST00000428558	NM_004260.3	354	Gta/Ata																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524363	187524363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	29	366	0	ENST00000441802.2:c.11317C>T	p.Arg3773Cys	p.R3773C	ENST00000441802	NM_005245.3	3773	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577523	7577524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	336	693	0	ENST00000269305.4:c.757dup	p.Thr253AsnfsTer11	p.T253Nfs*11	ENST00000269305	NM_001126112.2	253	acc/aAcc																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992223	11992223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	40	374	0	ENST00000396373.4:c.313C>G	p.Arg105Gly	p.R105G	ENST00000396373	NM_001987.4	105	Cga/Gga																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164821	36164821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	180	874	0	ENST00000300305.3:c.1054G>A	p.Ala352Thr	p.A352T	ENST00000300305		352	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	169	489	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0039181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	337	764	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ATM	472	MSKCC	GRCh37	11	108196791	108196791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	92	277	0	ENST00000278616.4:c.6814G>A	p.Glu2272Lys	p.E2272K	ENST00000278616	NM_000051.3	2272	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108180936	108180936	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	87	337	0	ENST00000278616.4:c.5812T>A	p.Tyr1938Asn	p.Y1938N	ENST00000278616	NM_000051.3	1938	Tat/Aat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118347562	118347562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	204	496	0	ENST00000534358.1:c.3199C>T	p.Arg1067Trp	p.R1067W	ENST00000534358	NM_005933.3	1067	Cgg/Tgg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641055	3641055	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs200715208		P-0039181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	70	1072	2	ENST00000294008.3:c.2584C>T	p.Arg862Ter	p.R862*	ENST00000294008	NM_032444.2	862	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892133	9892133	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0039181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	164	568	0	ENST00000330684.3:c.2356+1G>C		p.X786_splice	ENST00000330684	NM_001134407.1	786																																																																															
EIF4A2	1974	MSKCC	GRCh37	3	186502381	186502381	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	140	419	0	ENST00000323963.5:c.104T>C	p.Phe35Ser	p.F35S	ENST00000323963		35	tTt/tCt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163372	32163372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	317	1011	0	ENST00000375023.3:c.5854G>A	p.Asp1952Asn	p.D1952N	ENST00000375023	NM_004557.3	1952	Gat/Aat																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814798	139814798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201857326		P-0039181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	150	817	0	ENST00000247668.2:c.791C>T	p.Ala264Val	p.A264V	ENST00000247668	NM_021138.3	264	gCg/gTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44894227	44894228	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	157	230	0	ENST00000377967.4:c.619dup	p.Ile207AsnfsTer10	p.I207Nfs*10	ENST00000377967	NM_021140.2	206	gaa/gAaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123196804	123196805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	133	314	0	ENST00000218089.9:c.1692dup	p.Glu565Ter	p.E565*	ENST00000218089	NM_001042749.1	564	act/acTt																																																																														
VHL	7428	MSKCC	GRCh37	3	10191570	10191570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	86	544	0	ENST00000256474.2:c.563T>C	p.Leu188Pro	p.L188P	ENST00000256474	NM_000551.3	188	cTg/cCg																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518445	69518445	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	41	315	0	ENST00000294312.3:c.200T>C	p.Val67Ala	p.V67A	ENST00000294312	NM_005117.2	67	gTc/gCc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	68	335	0	ENST00000355739.4:c.1537G>A	p.Ala513Thr	p.A513T	ENST00000355739	NM_000123.3	513	Gca/Aca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	150	542	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	153	826	3	ENST00000263388.2:c.125delC	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	109	531	1	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	114	570	1	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528621	89528621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	38	302	0	ENST00000336596.2:c.2921C>T	p.Thr974Met	p.T974M	ENST00000336596	NM_005233.5	974	aCg/aTg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	124	610	2	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030612	48030612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	91	459	0	ENST00000234420.5:c.3226C>T	p.Arg1076Cys	p.R1076C	ENST00000234420	NM_000179.2	1076	Cgc/Tgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	362	838	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274777	123274777	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	198	597	0	ENST00000358487.5:c.1141T>G	p.Tyr381Asp	p.Y381D	ENST00000358487	NM_000141.4	381	Tac/Gac																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281070	49281070	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	119	670	0	ENST00000282018.3:c.117A>T	p.Glu39Asp	p.E39D	ENST00000282018	NM_020377.2	39	gaA/gaT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222938	36222938	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	194	1059	1	ENST00000222270.7:c.5572delC	p.Arg1858ValfsTer37	p.R1858Vfs*37	ENST00000222270	NM_014727.1	1856	gCc/gc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357108	89357108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	131	763	1	ENST00000301030.4:c.526G>A	p.Ala176Thr	p.A176T	ENST00000301030	NM_001256183.1	176	Gcc/Acc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712824	43712824	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	127	861	0	ENST00000382044.4:c.4360C>T	p.Arg1454Ter	p.R1454*	ENST00000382044	NM_001141980.1	1454	Cga/Tga																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467922	50467922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	87	537	0	ENST00000331340.3:c.1157G>A	p.Arg386His	p.R386H	ENST00000331340	NM_006060.4	386	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089560	27089561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	152	717	0	ENST00000324856.7:c.2517dup	p.Gln840SerfsTer32	p.Q840Sfs*32	ENST00000324856	NM_006015.4	839	ggt/ggTt																																																																														
ATM	472	MSKCC	GRCh37	11	108119829	108119829	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	40	246	0	ENST00000278616.4:c.1235G>T	p.Trp412Leu	p.W412L	ENST00000278616	NM_000051.3	412	tGg/tTg																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129759	30129759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	126	664	3	ENST00000263025.4:c.454C>T	p.Arg152Trp	p.R152W	ENST00000263025	NM_002746.2	152	Cgg/Tgg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39609400	39609400	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	63	366	0	ENST00000262039.4:c.1706del	p.Lys569ArgfsTer15	p.K569Rfs*15	ENST00000262039	NM_002647.2	568	Aaa/aa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376188	15376188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	120	577	1	ENST00000263377.2:c.826G>A	p.Ala276Thr	p.A276T	ENST00000263377	NM_058243.2	276	Gcg/Acg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224134	36224135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	124	839	0	ENST00000222270.7:c.6687dup	p.Thr2230HisfsTer73	p.T2230Hfs*73	ENST00000222270	NM_014727.1	2228	-/C																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47596650	47596651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	80	338	0	ENST00000263735.4:c.11dup	p.Gln5AlafsTer26	p.Q5Afs*26	ENST00000263735	NM_002354.2	2	-/C																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138456659	138456659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	38	542	0	ENST00000289153.2:c.691C>T	p.Arg231Cys	p.R231C	ENST00000289153	NM_006219.2	231	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629387	187629387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	149	736	2	ENST00000441802.2:c.1595G>A	p.Arg532Gln	p.R532Q	ENST00000441802	NM_005245.3	532	cGg/cAg																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26021091	26021091	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	91	451	0	ENST00000357647.3:c.374T>A	p.Ile125Asn	p.I125N	ENST00000357647	NM_003529.2	125	aTc/aAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172167	32172167	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	111	637	0	ENST00000375023.3:c.2866-1G>C		p.X956_splice	ENST00000375023	NM_004557.3	956																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100138	157100138	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	12	46	0	ENST00000346085.5:c.1079del	p.Gly360AlafsTer9	p.G360Afs*9	ENST00000346085	NM_020732.3	359	Ggg/gg																																																																														
ABL1	25	MSKCC	GRCh37	9	133755470	133755470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	125	653	0	ENST00000318560.5:c.1439C>A	p.Pro480His	p.P480H	ENST00000318560	NM_005157.4	480	cCc/cAc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15836735	15836735	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	35	483	0	ENST00000307771.7:c.797T>C	p.Leu266Pro	p.L266P	ENST00000307771	NM_005089.3	266	cTg/cCg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923021	44923025	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGA	GCAGA	-			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	120	681	0	ENST00000377967.4:c.1883_1887del	p.Ala628GlyfsTer9	p.A628Gfs*9	ENST00000377967	NM_021140.2	628	GCAGAg/g																																																																														
MED12	9968	MSKCC	GRCh37	X	70360623	70360624	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG			P-0039184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	67	420	0	ENST00000374080.3:c.6198_6200dupGCA	p.Gln2076dup	p.Q2076dup	ENST00000374080		2076	-/CAG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	75	780	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672323	86672323	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	38	464	0	ENST00000274376.6:c.2125C>T	p.Arg709Ter	p.R709*	ENST00000274376	NM_002890.2	709	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974714	21974714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	44	427	0	ENST00000304494.5:c.113C>A	p.Pro38His	p.P38H	ENST00000304494	NM_000077.4	38	cCc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974714	21974714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	44	427	0	ENST00000304494.5:c.113C>A	p.Pro38His	p.P38H	ENST00000304494	NM_000077.4	38	cCc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603044	48603044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	40	385	0	ENST00000342988.3:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000342988	NM_005359.5	449	Cag/Tag																																																																														
SRC	6714	MSKCC	GRCh37	20	36031759	36031759	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	63	643	0	ENST00000358208.4:c.1588T>C	p.Tyr530His	p.Y530H	ENST00000358208		530	Tac/Cac																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691874	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0039185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	23	399	0	ENST00000359013.4:c.456_458del	p.Lys153del	p.K153del	ENST00000359013	NM_001024847.2	150	gAAAaa/gaa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032230	26032233	+	frameshift_variant	Frame_Shift_Del	DEL	TGCT	TGCT	-			P-0039185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	24	388	0	ENST00000244661.2:c.56_59del	p.Lys19SerfsTer17	p.K19Sfs*17	ENST00000244661	NM_003537.3	19	aAGCAg/ag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974723	21974723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	41	411	0	ENST00000304494.5:c.104G>C	p.Gly35Ala	p.G35A	ENST00000304494	NM_000077.4	35	gGg/gCg																																																																														
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	102	255	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	75	365	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120151	70120152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	135	303	1	ENST00000245479.2:c.1154_1155dup	p.Ser386Ter	p.S386*	ENST00000245479	NM_000346.3	385	ctg/cTGtg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955186	17955186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	178	775	2	ENST00000458235.1:c.41G>A	p.Arg14His	p.R14H	ENST00000458235	NM_000215.3	14	cGt/cAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714731	52714731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	119	557	0	ENST00000322088.6:c.489G>C	p.Lys163Asn	p.K163N	ENST00000322088	NM_014225.5	163	aaG/aaC																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070400	37070400	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	53	305	0	ENST00000231790.2:c.1535A>C	p.Glu512Ala	p.E512A	ENST00000231790	NM_000249.3	512	gAa/gCa																																																																														
RHOA	387	MSKCC	GRCh37	3	49399935	49399935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	87	392	1	ENST00000418115.1:c.402G>A	p.Met134Ile	p.M134I	ENST00000418115	NM_001664.2	134	atG/atA																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71015209	71015210	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TG	TG	-			P-0039187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	25	192	0	ENST00000318789.4:c.1723-3_1723-2del		p.X575_splice	ENST00000318789	NM_032682.5	575																																																																															
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	164	748	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968266	2968266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	160	751	0	ENST00000396946.4:c.1720G>A	p.Val574Ile	p.V574I	ENST00000396946	NM_032415.4	574	Gtc/Atc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65303621	65303625	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGG	ACAGG	-			P-0039122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	22	512	0	ENST00000342505.4:c.3130_3134del	p.Pro1044ValfsTer12	p.P1044Vfs*12	ENST00000342505	NM_002227.2	1044	CCTGTg/g																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093362	30093362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	69	510	2	ENST00000331968.5:c.1901T>C	p.Leu634Pro	p.L634P	ENST00000331968	NM_002742.2	634	cTa/cCa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562459	95562459	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	50	481	0	ENST00000343455.3:c.4798del	p.Glu1600LysfsTer20	p.E1600Kfs*20	ENST00000343455	NM_177438.2	1600	Gaa/aa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945773	38945773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	11	262	0	ENST00000357387.3:c.4453C>T	p.Gln1485Ter	p.Q1485*	ENST00000357387	NM_152756.3	1485	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175349	112175377	+	frameshift_variant	Frame_Shift_Del	DEL	AATTTTCTTCAGGAGCGAAATCTCCCTCC	AATTTTCTTCAGGAGCGAAATCTCCCTCC	-			P-0039122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	42	265	0	ENST00000257430.4:c.4060_4088del	p.Phe1354LysfsTer11	p.F1354Kfs*11	ENST00000257430	NM_000038.5	1353	gAATTTTCTTCAGGAGCGAAATCTCCCTCC/g																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662739	117662739	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200762545		P-0039122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	20	333	0	ENST00000368508.3:c.4726A>G	p.Ile1576Val	p.I1576V	ENST00000368508	NM_002944.2	1576	Ata/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0039124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	106	833	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	146	557	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	78	391	0	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983127	149983127	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	50	722	0	ENST00000253339.5:c.3131del	p.Pro1044LeufsTer14	p.P1044Lfs*14	ENST00000253339		1044	cCt/ct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	169	431	1				ENST00000310581	NM_198253.2																																																																																
FAT1	2195	MSKCC	GRCh37	4	187527264	187527264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	228	507	3	ENST00000441802.2:c.10310C>T	p.Ala3437Val	p.A3437V	ENST00000441802	NM_005245.3	3437	gCg/gTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47079197	47079197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	250	572	0	ENST00000409792.3:c.7309A>G	p.Met2437Val	p.M2437V	ENST00000409792	NM_014159.6	2437	Atg/Gtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0039128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	123	638	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024488	31024488	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs6057581		P-0039128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	486	729	0	ENST00000375687.4:c.3973C>T	p.Leu1325Phe	p.L1325F	ENST00000375687	NM_015338.5	1325	Ctt/Ttt																																																																														
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	566	926	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																														
APC	324	MSKCC	GRCh37	5	112177434	112177435	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	107	412	0	ENST00000257430.4:c.6149dupA	p.Lys2051GlufsTer9	p.K2051Efs*9	ENST00000257430	NM_000038.5	2048	cca/ccAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883131	37883131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	301	897	2	ENST00000269571.5:c.3034G>A	p.Asp1012Asn	p.D1012N	ENST00000269571		1012	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422898	49422898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	279	819	0	ENST00000301067.7:c.14197G>C	p.Glu4733Gln	p.E4733Q	ENST00000301067	NM_003482.3	4733	Gag/Cag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134206	11134206	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	228	682	0	ENST00000344626.4:c.2872G>C	p.Glu958Gln	p.E958Q	ENST00000344626	NM_003072.3	958	Gag/Cag																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31395571	31395571	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	176	668	0	ENST00000328111.2:c.2424C>G	p.Ile808Met	p.I808M	ENST00000328111	NM_006892.3	808	atC/atG																																																																														
BCL6	604	MSKCC	GRCh37	3	187444625	187444625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	212	566	0	ENST00000232014.4:c.1602G>C	p.Lys534Asn	p.K534N	ENST00000232014	NM_001130845.1	534	aaG/aaC																																																																														
MED12	9968	MSKCC	GRCh37	X	70339285	70339285	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	43	332	0	ENST00000374080.3:c.162T>G	p.Asp54Glu	p.D54E	ENST00000374080		54	gaT/gaG																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426830	121426830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201934320		P-0039129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	36	500	0	ENST00000257555.6:c.521C>T	p.Ala174Val	p.A174V	ENST00000257555		174	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576885	7576885	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	124	692	0	ENST00000269305.4:c.961A>T	p.Lys321Ter	p.K321*	ENST00000269305	NM_001126112.2	321	Aaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	33	315	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	219	581	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0039130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	28	455	0				ENST00000310581	NM_198253.2																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10260550	10260550	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0039130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	52	673	0	ENST00000340748.4:c.2312C>G	p.Ser771Ter	p.S771*	ENST00000340748		771	tCa/tGa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442041	52442041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	62	593	0	ENST00000460680.1:c.308G>A	p.Cys103Tyr	p.C103Y	ENST00000460680	NM_004656.3	103	tGc/tAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	216	468	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370945	55370945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	202	725	1	ENST00000297316.4:c.247C>T	p.Arg83Cys	p.R83C	ENST00000297316	NM_022454.3	83	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	389	841	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213843	66213843	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	79	491	0	ENST00000273854.3:c.2587A>T	p.Ser863Cys	p.S863C	ENST00000273854	NM_004439.5	863	Agt/Tgt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21636409	21636409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	194	597	0	ENST00000421138.2:c.601A>G	p.Met201Val	p.M201V	ENST00000421138		201	Atg/Gtg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292411	15292411	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	290	831	0	ENST00000263388.2:c.2768A>C	p.Gln923Pro	p.Q923P	ENST00000263388	NM_000435.2	923	cAg/cCg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264671	46264671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	172	376	0	ENST00000371998.3:c.1541G>T	p.Gly514Val	p.G514V	ENST00000371998		514	gGg/gTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251974	153251974	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	92	560	0	ENST00000281708.4:c.1032del	p.Gly345ValfsTer32	p.G345Vfs*32	ENST00000281708	NM_033632.3	344	ccA/cc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576459	67576459	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	112	351	0	ENST00000274335.5:c.740del	p.Phe247SerfsTer13	p.F247Sfs*13	ENST00000274335		246	caT/ca																																																																														
APC	324	MSKCC	GRCh37	5	112137018	112137019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	220	487	0	ENST00000257430.4:c.773dup	p.Arg259AlafsTer4	p.R259Afs*4	ENST00000257430	NM_000038.5	258	gag/gAag																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056399	26056399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	67	377	0	ENST00000343677.2:c.258C>A	p.Ser86Arg	p.S86R	ENST00000343677	NM_005319.3	86	agC/agA																																																																														
PREX2	80243	MSKCC	GRCh37	8	68984737	68984737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	74	338	1	ENST00000288368.4:c.1501G>T	p.Asp501Tyr	p.D501Y	ENST00000288368	NM_024870.2	501	Gat/Tat																																																																														
ATRX	546	MSKCC	GRCh37	X	76939030	76939030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	193	664	0	ENST00000373344.5:c.1718G>A	p.Gly573Asp	p.G573D	ENST00000373344	NM_000489.3	573	gGt/gAt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115955	8115956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	111	408	0	ENST00000346208.3:c.1305dupC	p.Ser436LeufsTer71	p.S436Lfs*71	ENST00000346208		434	cac/caCc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63530077	63530077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			4975	994	587	0	ENST00000307078.5:c.2358G>C	p.Leu786Phe	p.L786F	ENST00000307078	NM_004655.3	786	ttG/ttC																																																																														
BTK	695	MSKCC	GRCh37	X	100612524	100612524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	129	426	1	ENST00000308731.7:c.1150G>A	p.Ala384Thr	p.A384T	ENST00000308731	NM_000061.2	384	Gca/Aca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521306	8521306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	70	308	0	ENST00000356435.5:c.932T>C	p.Ile311Thr	p.I311T	ENST00000356435		311	aTt/aCt																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94212002	94212002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	22	403	0	ENST00000323929.3:c.443G>A	p.Gly148Glu	p.G148E	ENST00000323929	NM_005591.3	148	gGa/gAa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202843	128202843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	207	538	0	ENST00000341105.2:c.877C>T	p.Arg293Trp	p.R293W	ENST00000341105	NM_032638.4	293	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117665419	117665419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145528392		P-0038857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	19	206	1	ENST00000368508.3:c.4328C>T	p.Ala1443Val	p.A1443V	ENST00000368508	NM_002944.2	1443	gCg/gTg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426042	47426042	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138292173		P-0038857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	31	349	2	ENST00000377045.4:c.562C>T	p.Arg188Cys	p.R188C	ENST00000377045	NM_001654.4	188	Cgc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	213403235	213403235	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	174	395	0	ENST00000342788.4:c.20T>G	p.Leu7Arg	p.L7R	ENST00000342788	NM_005235.2	7	cTt/cGt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256541	115256541	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	112	498	0	ENST00000369535.4:c.170del	p.Asp57ValfsTer11	p.D57Vfs*11	ENST00000369535	NM_002524.4	57	gAt/gt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510802	120510802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	83	385	1	ENST00000256646.2:c.1162G>A	p.Ala388Thr	p.A388T	ENST00000256646	NM_024408.3	388	Gca/Aca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918727	32918727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	75	217	0	ENST00000380152.3:c.6874G>A	p.Glu2292Lys	p.E2292K	ENST00000380152		2292	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578365	7578398	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTCACCATCGCTATCTGAGCAGCGCTCATGGTG	GCTCACCATCGCTATCTGAGCAGCGCTCATGGTG	-			P-0038857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	378	446	0	ENST00000269305.4:c.532_559+6del		p.X178_splice	ENST00000269305	NM_001126112.2	178																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5245963	5245963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	323	623	0	ENST00000357368.4:c.812C>T	p.Ser271Leu	p.S271L	ENST00000357368	NM_002850.3	271	tCg/tTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483976	212483976	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	143	365	0	ENST00000342788.4:c.2227A>C	p.Thr743Pro	p.T743P	ENST00000342788	NM_005235.2	743	Act/Cct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419992	41419992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	113	431	0	ENST00000373198.4:c.329C>A	p.Ser110Tyr	p.S110Y	ENST00000373198	NM_133170.3	110	tCc/tAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	251	478	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144049	11144051	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0039041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	348	702	0	ENST00000344626.4:c.3634_3636del	p.Glu1212del	p.E1212del	ENST00000344626	NM_003072.3	1210	gtGGAg/gtg																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225684	26225686	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0039041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	218	580	0	ENST00000360408.1:c.305_307del	p.Val102del	p.V102del	ENST00000360408	NM_003532.2	101	tTGGtg/ttg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151851482	151851482	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	172	360	0	ENST00000262189.6:c.12009del	p.Ser4004HisfsTer10	p.S4004Hfs*10	ENST00000262189	NM_170606.2	4003	ccC/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	142	203	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266110	41266110	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	108	281	0	ENST00000349496.5:c.107A>C	p.His36Pro	p.H36P	ENST00000349496	NM_001904.3	36	cAt/cCt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098959	178098959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	69	244	0	ENST00000397062.3:c.86A>G	p.Asp29Gly	p.D29G	ENST00000397062	NM_006164.4	29	gAt/gGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162201	47162201	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	95	372	0	ENST00000409792.3:c.3925A>T	p.Arg1309Ter	p.R1309*	ENST00000409792	NM_014159.6	1309	Aga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390066	89390066	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	47	217	1	ENST00000336596.2:c.815C>T	p.Ala272Val	p.A272V	ENST00000336596	NM_005233.5	272	gCt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0039045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	177	365	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	584	575	1	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25536832	25536832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	146	433	0	ENST00000264709.3:c.22G>A	p.Gly8Ser	p.G8S	ENST00000264709	NM_175629.2	8	Ggc/Agc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710609	40710609	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0039045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	117	480	0	ENST00000373198.4:c.4242T>A	p.Cys1414Ter	p.C1414*	ENST00000373198	NM_133170.3	1414	tgT/tgA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	50	541	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	159	302	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	159	302	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	159	302	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094455	27094456	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	141	460	0	ENST00000324856.7:c.3164_3165delAT	p.Tyr1055CysfsTer49	p.Y1055Cfs*49	ENST00000324856	NM_006015.4	1055	TAt/t																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944864	31944864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	89	564	0	ENST00000340398.3:c.237C>A	p.Asn79Lys	p.N79K	ENST00000340398	NM_001013699.2	79	aaC/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	359	496	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
H3F3C	440093	MSKCC	GRCh37	12	31944836	31944836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148314204		P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1217	134	763	0	ENST00000340398.3:c.265G>A	p.Val89Ile	p.V89I	ENST00000340398	NM_001013699.2	89	Gtc/Atc																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944789	31944789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	119	517	0	ENST00000340398.3:c.312G>C	p.Leu104Phe	p.L104F	ENST00000340398	NM_001013699.2	104	ttG/ttC																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944989	31944990	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTT			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	127	766	0	ENST00000340398.3:c.109_111dup	p.Lys37dup	p.K37dup	ENST00000340398	NM_001013699.2	37	-/AAG																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945001	31945001	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	125	772	0	ENST00000340398.3:c.100T>G	p.Cys34Gly	p.C34G	ENST00000340398	NM_001013699.2	34	Tgc/Ggc																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945013	31945013	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	107	753	0	ENST00000340398.3:c.88A>G	p.Thr30Ala	p.T30A	ENST00000340398	NM_001013699.2	30	Acc/Gcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443860	49443861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	210	735	0	ENST00000301067.7:c.3509_3510dup	p.Glu1171ProfsTer42	p.E1171Pfs*42	ENST00000301067	NM_003482.3	1170	-/CC																																																																														
POLE	5426	MSKCC	GRCh37	12	133249853	133249853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	127	442	0	ENST00000320574.5:c.1370C>T	p.Thr457Met	p.T457M	ENST00000320574	NM_006231.2	457	aCg/aTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829102	72829102	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	240	557	0	ENST00000268489.5:c.7479del	p.Leu2494TyrfsTer34	p.L2494Yfs*34	ENST00000268489	NM_006885.3	2493	ccC/cc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610364	10610364	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	283	686	0	ENST00000171111.5:c.346C>G	p.Arg116Gly	p.R116G	ENST00000171111	NM_203500.1	116	Cgg/Ggg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561333	9561333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	134	387	0	ENST00000353224.5:c.449G>T	p.Ser150Ile	p.S150I	ENST00000353224	NM_177990.2	150	aGt/aTt																																																																														
KIT	3815	MSKCC	GRCh37	4	55564521	55564521	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	146	495	0	ENST00000288135.5:c.409C>G	p.Pro137Ala	p.P137A	ENST00000288135	NM_000222.2	137	Cct/Gct																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876452	35876452	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	378	550	0	ENST00000303115.3:c.1244T>A	p.Leu415Gln	p.L415Q	ENST00000303115	NM_002185.3	415	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	399	490	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
RB1	5925	MSKCC	GRCh37	13	49030485	49030485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0039050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	200	260	0	ENST00000267163.4:c.1960G>A	p.Val654Met	p.V654M	ENST00000267163	NM_000321.2	654	Gtg/Atg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170102	32170102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1293	478	805	2	ENST00000375023.3:c.3506G>A	p.Arg1169Gln	p.R1169Q	ENST00000375023	NM_004557.3	1169	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242484	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAACAT	TTAAGAGAAGCAACAT	CAAC			P-0039050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	5730	342	1	ENST00000275493.2:c.2239_2254delinsCAAC	p.Leu747_Ser752delinsGlnPro	p.L747_S752delinsQP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATct/CAACct																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53241009	53241009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	390	297	0	ENST00000375401.3:c.1202C>T	p.Ala401Val	p.A401V	ENST00000375401	NM_004187.3	401	gCc/gTc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	150	482	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63817028	63817028	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	86	280	0	ENST00000279873.7:c.999A>C	p.Lys333Asn	p.K333N	ENST00000279873	NM_032199.2	333	aaA/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	195	721	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112175248	112175249	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0039055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	33	232	0	ENST00000257430.4:c.3959_3960delTG	p.Val1320GlufsTer11	p.V1320Efs*11	ENST00000257430	NM_000038.5	1319	ccTGtg/cctg																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0039055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	36	344	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434953	110434953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	51	604	0	ENST00000375856.3:c.3448G>A	p.Glu1150Lys	p.E1150K	ENST00000375856	NM_003749.2	1150	Gag/Aag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212450	5212450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	202	651	0	ENST00000357368.4:c.4667C>T	p.Pro1556Leu	p.P1556L	ENST00000357368	NM_002850.3	1556	cCg/cTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557476	21557476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	95	534	0	ENST00000382592.4:c.2369G>A	p.Arg790Gln	p.R790Q	ENST00000382592	NM_014572.2	790	cGa/cAa																																																																														
NF2	4771	MSKCC	GRCh37	22	30051652	30051652	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	80	320	0	ENST00000338641.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000338641	NM_000268.3	196	Cga/Tga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130310	2130310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	250	909	3	ENST00000219476.3:c.3542C>T	p.Thr1181Met	p.T1181M	ENST00000219476	NM_000548.3	1181	aCg/aTg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40864342	40864344	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0039074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	126	724	1	ENST00000428826.2:c.1364_1366del	p.Ser455_Ile456delinsLeu	p.S455_I456delinsL	ENST00000428826		455	tCAAta/tta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	4	312	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0039085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	13	292	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	40	316	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	62	180	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210796	5210796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	88	543	2	ENST00000357368.4:c.5255C>T	p.Ala1752Val	p.A1752V	ENST00000357368	NM_002850.3	1752	gCg/gTg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265544	152265544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	66	429	1	ENST00000206249.3:c.997C>T	p.Pro333Ser	p.P333S	ENST00000206249	NM_000125.3	333	Cct/Tct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	83	318	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	214	569	0	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105561	11105561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	202	550	1	ENST00000344626.4:c.1477G>A	p.Val493Ile	p.V493I	ENST00000344626	NM_003072.3	493	Gtc/Atc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89831345	89831346	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0039092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	178	519	2	ENST00000389301.3:c.2730_2731del	p.Trp911AspfsTer31	p.W911Dfs*31	ENST00000389301	NM_000135.2	910	ctCTgg/ctgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873120	151873280	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCGTCTCAAAACAAAACAAACAAACTCCTCAAGGAGGAATAGAAAAACTCAGTGCTTTATTCCAACTGTAATTCTAATAATAAAATCTTATAAGCATATCGCATGCCACTCTAATACCCATAGTAATATACGTTGAGACTCAAGAAAACTCCTACCAATA	TCCGTCTCAAAACAAAACAAACAAACTCCTCAAGGAGGAATAGAAAAACTCAGTGCTTTATTCCAACTGTAATTCTAATAATAAAATCTTATAAGCATATCGCATGCCACTCTAATACCCATAGTAATATACGTTGAGACTCAAGAAAACTCCTACCAATA	-			P-0039092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	32	38	0	ENST00000262189.6:c.9258_9262+156del		p.X3086_splice	ENST00000262189	NM_170606.2	3086																																																																															
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0039104-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	935	732	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
GSK3B	2932	MSKCC	GRCh37	3	119721044	119721044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039104-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	220	511	0	ENST00000316626.5:c.131C>G	p.Pro44Arg	p.P44R	ENST00000316626		44	cCt/cGt																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045986	26045986	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039104-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			865	96	414	0	ENST00000540144.1:c.348A>T	p.Lys116Asn	p.K116N	ENST00000540144	NM_003531.2	116	aaA/aaT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100553	157100553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039104-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	89	398	0	ENST00000346085.5:c.1490G>A	p.Ser497Asn	p.S497N	ENST00000346085	NM_020732.3	497	aGt/aAt																																																																														
FANCC	2176	MSKCC	GRCh37	9	97864015	97864015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039104-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			704	51	509	0	ENST00000289081.3:c.1651C>T	p.Leu551Phe	p.L551F	ENST00000289081	NM_000136.2	551	Ctt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	561	517	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	53	317	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	321	457	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223023	5223023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	238	744	2	ENST00000357368.4:c.2780C>T	p.Thr927Met	p.T927M	ENST00000357368	NM_002850.3	927	aCg/aTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509966	106509966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	254	485	0	ENST00000359195.3:c.1960G>A	p.Asp654Asn	p.D654N	ENST00000359195	NM_002649.2	654	Gat/Aat																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627710	37627710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	135	678	0	ENST00000447079.4:c.1625C>A	p.Thr542Asn	p.T542N	ENST00000447079	NM_015083.1	542	aCt/aAt																																																																														
APC	324	MSKCC	GRCh37	5	112170863	112170863	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	144	350	1	ENST00000257430.4:c.1958+1G>T		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157099423	157099424	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0039209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	325	261	0	ENST00000346085.5:c.360_361delinsTT	p.Gln120_Gln121delinsHisTer	p.Q120_Q121delinsH*	ENST00000346085	NM_020732.3	120	caGCaa/caTTaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	49	414	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034880-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	223	300	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0034880-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	142	332	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034880-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	202	295	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106336	27106337	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0034880-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			120	570	525	0	ENST00000324856.7:c.5952_5953delGT	p.Ser1985GlnfsTer13	p.S1985Qfs*13	ENST00000324856	NM_006015.4	1983	TGt/t																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022288	31022288	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034880-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	180	380	0	ENST00000375687.4:c.1773C>A	p.Tyr591Ter	p.Y591*	ENST00000375687	NM_015338.5	591	taC/taA																																																																														
CCND1	595	MSKCC	GRCh37	11	69466023	69466052	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CACCGACGTGCGGGACGTGGACATCTGAGG	CACCGACGTGCGGGACGTGGACATCTGAGG	-			P-0034880-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	158	573	0	ENST00000227507.2:c.861_*2del		p.*287*	ENST00000227507	NM_053056.2	287																																																																															
CTCF	10664	MSKCC	GRCh37	16	67646003	67646003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034880-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	197	413	0	ENST00000264010.4:c.932del	p.Asn311IlefsTer22	p.N311Ifs*22	ENST00000264010	NM_006565.3	311	Aat/at																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	241	345	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30320963	30320963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	50	318	1	ENST00000322652.5:c.1373G>A	p.Arg458His	p.R458H	ENST00000322652	NM_015355.2	458	cGc/cAc																																																																														
TP63	8626	MSKCC	GRCh37	3	189612127	189612128	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	1085	434	0	ENST00000264731.3:c.1879_1880del	p.Ser627CysfsTer5	p.S627Cfs*5	ENST00000264731	NM_003722.4	627	AGt/t																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	54	316	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	65	215	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	32	407	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	41	163	1	ENST00000358273.4:c.1882delT	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	72	192	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	58	355	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812260	212812260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	58	228	0	ENST00000342788.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000342788	NM_005235.2	106	Cgt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	105	340	1	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	89	297	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426701	121426701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	114	443	1	ENST00000257555.6:c.392G>A	p.Arg131Gln	p.R131Q	ENST00000257555		131	cGg/cAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538269	187538269	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	96	349	1	ENST00000441802.2:c.8965delA	p.Arg2989GlyfsTer20	p.R2989Gfs*20	ENST00000441802	NM_005245.3	2989	Agg/gg																																																																														
RARA	5914	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	118	372	0	ENST00000254066.5:c.1319delC	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																														
YES1	7525	MSKCC	GRCh37	18	745962	745963	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	44	309	0	ENST00000314574.4:c.559_560delAG	p.Ser187Ter	p.S187*	ENST00000314574	NM_005433.3	187	AGt/t																																																																														
CUL3	8452	MSKCC	GRCh37	2	225339002	225339002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	70	286	1	ENST00000264414.4:c.2267G>A	p.Arg756Gln	p.R756Q	ENST00000264414	NM_003590.4	756	cGa/cAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176719045	176719045	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	82	236	0	ENST00000439151.2:c.6349C>T	p.Arg2117Ter	p.R2117*	ENST00000439151	NM_022455.4	2117	Cga/Tga																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	189	362	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223328	36223328	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	41	545	0	ENST00000222270.7:c.5882delC	p.Pro1961LeufsTer26	p.P1961Lfs*26	ENST00000222270	NM_014727.1	1960	Ccc/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827231	72827231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	99	396	0	ENST00000268489.5:c.9350C>T	p.Ala3117Val	p.A3117V	ENST00000268489	NM_006885.3	3117	gCg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845391	151845391	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	64	401	0	ENST00000262189.6:c.13621C>T	p.Arg4541Ter	p.R4541*	ENST00000262189	NM_170606.2	4541	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101109	27101110	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	110	447	0	ENST00000324856.7:c.4394_4395del	p.Ser1465CysfsTer25	p.S1465Cfs*25	ENST00000324856	NM_006015.4	1464	gTC/g																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690801	89690801	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	51	190	0	ENST00000371953.3:c.210-2A>G		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633500	3633500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199969428		P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	35	436	1	ENST00000294008.3:c.4751G>A	p.Arg1584His	p.R1584H	ENST00000294008	NM_032444.2	1584	cGc/cAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662453	67662453	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	51	441	0	ENST00000264010.4:c.1699C>T	p.Arg567Trp	p.R567W	ENST00000264010	NM_006565.3	567	Cgg/Tgg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120796847	120796847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	155	444	0	ENST00000257552.2:c.412G>A	p.Ala138Thr	p.A138T	ENST00000257552	NM_002442.3	138	Gcc/Acc																																																																														
TET1	80312	MSKCC	GRCh37	10	70451273	70451273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	144	363	0	ENST00000373644.4:c.6113G>A	p.Arg2038His	p.R2038H	ENST00000373644	NM_030625.2	2038	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106019	27106019	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	56	340	0	ENST00000324856.7:c.5633del	p.Pro1878LeufsTer5	p.P1878Lfs*5	ENST00000324856	NM_006015.4	1877	gCc/gc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176085774	176085774	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	89	243	0	ENST00000367669.3:c.1012A>C	p.Ser338Arg	p.S338R	ENST00000367669	NM_022457.5	338	Agt/Cgt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348866	89348866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	54	526	1	ENST00000301030.4:c.4084G>A	p.Asp1362Asn	p.D1362N	ENST00000301030	NM_001256183.1	1362	Gac/Aac																																																																														
INSR	3643	MSKCC	GRCh37	19	7117404	7117404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	108	409	1	ENST00000302850.5:c.3812T>C	p.Met1271Thr	p.M1271T	ENST00000302850	NM_000208.2	1271	aTg/aCg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47656933	47656933	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	94	203	0	ENST00000233146.2:c.1129C>T	p.Gln377Ter	p.Q377*	ENST00000233146	NM_000251.2	377	Caa/Taa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698199	47698199	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	42	169	0	ENST00000233146.2:c.1757C>A	p.Ser586Ter	p.S586*	ENST00000233146	NM_000251.2	586	tCa/tAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89444996	89444996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	48	277	0	ENST00000336596.2:c.1316C>T	p.Pro439Leu	p.P439L	ENST00000336596	NM_005233.5	439	cCt/cTt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808898	1808898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	60	488	0	ENST00000260795.2:c.2330C>T	p.Thr777Ile	p.T777I	ENST00000260795		777	aCc/aTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627738	187627738	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	79	300	0	ENST00000441802.2:c.3244T>A	p.Phe1082Ile	p.F1082I	ENST00000441802	NM_005245.3	1082	Ttc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112128204	112128204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	77	231	0	ENST00000257430.4:c.707A>G	p.Gln236Arg	p.Q236R	ENST00000257430	NM_000038.5	236	cAg/cGg																																																																														
ABL1	25	MSKCC	GRCh37	9	133730364	133730364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	115	343	0	ENST00000318560.5:c.430G>A	p.Gly144Arg	p.G144R	ENST00000318560	NM_005157.4	144	Ggg/Agg																																																																														
MED12	9968	MSKCC	GRCh37	X	70344217	70344218	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0038944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	79	211	0	ENST00000374080.3:c.1953_1954del	p.Ser652GlnfsTer17	p.S652Qfs*17	ENST00000374080		651	ggCAgc/gggc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	64	308	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	157	311	0				ENST00000310581	NM_198253.2																																																																																
DNMT3A	1788	MSKCC	GRCh37	2	25458627	25458627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	97	352	0	ENST00000264709.3:c.2546C>T	p.Pro849Leu	p.P849L	ENST00000264709	NM_175629.2	849	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0039001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	274	341	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	48919214	48919214	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0039001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	23	95	0	ENST00000267163.4:c.381-2A>T		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																															
CSF3R	1441	MSKCC	GRCh37	1	36941180	36941180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	378	650	1	ENST00000361632.4:c.159C>A	p.Ser53Arg	p.S53R	ENST00000361632		53	agC/agA																																																																														
CDH1	999	MSKCC	GRCh37	16	68863557	68863557	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0039001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	326	411	0	ENST00000261769.5:c.2296G>C	p.Asp766His	p.D766H	ENST00000261769	NM_004360.3	766	Gac/Cac																																																																														
TSC1	7248	MSKCC	GRCh37	9	135801119	135801122	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-			P-0039001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	180	253	0	ENST00000298552.3:c.215_218del	p.Leu72ArgfsTer25	p.L72Rfs*25	ENST00000298552	NM_001162426.1	72	cTCTTg/cg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574005	7574009	+	frameshift_variant	Frame_Shift_Del	DEL	AACAT	AACAT	-			P-0039001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	349	586	1	ENST00000269305.4:c.1018_1022del	p.Met340ProfsTer5	p.M340Pfs*5	ENST00000269305	NM_001126112.2	340	ATGTTc/c																																																																														
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0039003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	86	265	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175789	112175789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	89	271	0	ENST00000257430.4:c.4501del	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1500	Ttt/tt																																																																														
B2M	567	MSKCC	GRCh37	15	45003775	45003775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0039003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	235	347	0	ENST00000558401.1:c.31G>C	p.Ala11Pro	p.A11P	ENST00000558401	NM_004048.2	11	Gcg/Ccg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727456	66727470	+	inframe_deletion	In_Frame_Del	DEL	CAGAAGGTGGGAGAA	CAGAAGGTGGGAGAA	-			P-0039003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	138	354	0	ENST00000307102.5:c.173_187del	p.Gln58_Glu62del	p.Q58_E62del	ENST00000307102	NM_002755.3	58	CAGAAGGTGGGAGAA/-																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115282445	115282445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	162	447	0	ENST00000438362.2:c.205G>T	p.Ala69Ser	p.A69S	ENST00000438362	NM_001242891.1	69	Gca/Tca																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482820	67482820	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	206	441	0	ENST00000327367.4:c.1224C>A	p.Asp408Glu	p.D408E	ENST00000327367	NM_005902.3	408	gaC/gaA																																																																														
SOS1	6654	MSKCC	GRCh37	2	39294883	39294883	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0039003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	101	355	0	ENST00000402219.2:c.99A>C	p.Gln33His	p.Q33H	ENST00000402219	NM_005633.3	33	caA/caC																																																																														
CUL3	8452	MSKCC	GRCh37	2	225367723	225367726	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0039003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	126	304	0	ENST00000264414.4:c.1441_1444del	p.Asn481GlnfsTer17	p.N481Qfs*17	ENST00000264414	NM_003590.4	481	AACAca/ca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38959958	38959962	+	frameshift_variant	Frame_Shift_Del	DEL	GTGTT	GTGTT	-			P-0039003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	89	229	0	ENST00000357387.3:c.1970_1974del	p.Gln657LeufsTer16	p.Q657Lfs*16	ENST00000357387	NM_152756.3	657	cAACAC/c																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589213	67589236	+	inframe_deletion	In_Frame_Del	DEL	GTGGTTGAATTAATAAACCACTAC	GTGGTTGAATTAATAAACCACTAC	-			P-0039003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	67	314	0	ENST00000274335.5:c.1201_1224del	p.Val401_Tyr408del	p.V401_Y408del	ENST00000274335		401	GTGGTTGAATTAATAAACCACTAC/-																																																																														
E2F3	1871	MSKCC	GRCh37	6	20483101	20483101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	76	283	0	ENST00000346618.3:c.834A>T	p.Gln278His	p.Q278H	ENST00000346618	NM_001949.4	278	caA/caT																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205680	38205680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	185	486	0	ENST00000317025.8:c.10T>C	p.Ser4Pro	p.S4P	ENST00000317025	NM_023034.1	4	Tct/Cct																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5549535	5549535	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	197	570	0	ENST00000397747.3:c.562A>G	p.Arg188Gly	p.R188G	ENST00000397747	NM_025239.3	188	Aga/Gga																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	198	617	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	90	235	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259042	16259043	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	160	490	0	ENST00000375759.3:c.6313dupG	p.Ala2105GlyfsTer18	p.A2105Gfs*18	ENST00000375759	NM_015001.2	2103	agg/aGgg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	141	433	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	93	314	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
NF1	4763	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	194	426	0	ENST00000358273.4:c.2033delC	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																																																														
EZH2	2146	MSKCC	GRCh37	7	148544345	148544345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	202	440	0	ENST00000320356.2:c.46C>T	p.Arg16Trp	p.R16W	ENST00000320356	NM_004456.4	16	Cgg/Tgg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	214	695	2	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	126	394	0	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693002	89693003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	81	394	0	ENST00000371953.3:c.491dupA	p.Val166SerfsTer14	p.V166Sfs*14	ENST00000371953	NM_000314.4	162	-/A																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046289	128046289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	157	406	0	ENST00000285398.2:c.974G>A	p.Arg325Gln	p.R325Q	ENST00000285398	NM_000122.1	325	cGa/cAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106155778	106155779	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	117	367	0	ENST00000380013.4:c.685dupA	p.Thr229AsnfsTer25	p.T229Nfs*25	ENST00000380013	NM_001127208.2	227	gaa/gAaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966231	25966231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	166	506	0	ENST00000435504.4:c.2975C>T	p.Ala992Val	p.A992V	ENST00000435504		992	gCg/gTg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148526849	148526849	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	139	365	0	ENST00000320356.2:c.455delA	p.Asn152IlefsTer15	p.N152Ifs*15	ENST00000320356	NM_004456.4	152	aAt/at																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145635	11145635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	186	526	0	ENST00000344626.4:c.3997C>T	p.Arg1333Trp	p.R1333W	ENST00000344626	NM_003072.3	1333	Cgg/Tgg																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	58	205	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	163	589	6	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15836766	15836766	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	157	366	0	ENST00000307771.7:c.827+1G>A		p.X276_splice	ENST00000307771	NM_005089.3	276																																																																															
PTPN11	5781	MSKCC	GRCh37	12	112892399	112892399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	119	418	0	ENST00000351677.2:c.557G>A	p.Arg186Gln	p.R186Q	ENST00000351677	NM_002834.3	186	cGg/cAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	298	368	20	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131977952	131977952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	121	303	0	ENST00000265335.6:c.3835C>T	p.Arg1279Cys	p.R1279C	ENST00000265335		1279	Cgt/Tgt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481659	56481659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	244	560	0	ENST00000267101.3:c.694G>A	p.Ala232Thr	p.A232T	ENST00000267101	NM_001982.3	232	Gcc/Acc																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384746	84384747	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	98	243	0	ENST00000321945.7:c.696dup	p.Val233SerfsTer5	p.V233Sfs*5	ENST00000321945	NM_139076.2	232	-/A																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163226	32163226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	194	571	1	ENST00000375023.3:c.6000G>T	p.Glu2000Asp	p.E2000D	ENST00000375023	NM_004557.3	2000	gaG/gaT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468193	120468193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	172	603	1	ENST00000256646.2:c.4246G>A	p.Ala1416Thr	p.A1416T	ENST00000256646	NM_024408.3	1416	Gca/Aca																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	57	282	0	ENST00000369902.3:c.70_71dup	p.Ala25ArgfsTer72	p.A25Rfs*72	ENST00000369902	NM_016169.3	22	gcc/gCCcc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375045	118375045	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	118	370	0	ENST00000534358.1:c.8438T>A	p.Val2813Asp	p.V2813D	ENST00000534358	NM_005933.3	2813	gTc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445100	49445100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	46	585	0	ENST00000301067.7:c.2366C>T	p.Ser789Phe	p.S789F	ENST00000301067	NM_003482.3	789	tCc/tTc																																																																														
RAB35	11021	MSKCC	GRCh37	12	120535126	120535126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	192	409	0	ENST00000229340.5:c.529G>T	p.Ala177Ser	p.A177S	ENST00000229340	NM_006861.6	177	Gca/Tca																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562535	21562535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	24	77	0	ENST00000382592.4:c.1384C>T	p.His462Tyr	p.H462Y	ENST00000382592	NM_014572.2	462	Cac/Tac																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346896	73346896	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	97	216	0	ENST00000377767.4:c.1321del	p.His441IlefsTer24	p.H441Ifs*24	ENST00000377767	NM_014953.3	441	Cat/at																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2090213	2090213	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147559648		P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	197	566	0	ENST00000219066.1:c.736G>A	p.Ala246Thr	p.A246T	ENST00000219066	NM_002528.5	246	Gcc/Acc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223493	2223493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	222	551	0	ENST00000326181.6:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000326181	NM_032271.2	342	Gaa/Aaa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118323	17118323	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	194	548	0	ENST00000285071.4:c.1514T>A	p.Val505Asp	p.V505D	ENST00000285071	NM_144997.5	505	gTc/gAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214734	36214734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	131	465	0	ENST00000222270.7:c.3163del	p.Arg1055GlyfsTer127	p.R1055Gfs*127	ENST00000222270	NM_014727.1	1054	Ccc/cc																																																																														
AXL	558	MSKCC	GRCh37	19	41726652	41726652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	168	622	2	ENST00000301178.4:c.197A>G	p.Glu66Gly	p.E66G	ENST00000301178	NM_021913.4	66	gAg/gGg																																																																														
CIC	23152	MSKCC	GRCh37	19	42795007	42795007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200405570		P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	228	650	1	ENST00000575354.2:c.2087G>A	p.Arg696Gln	p.R696Q	ENST00000575354	NM_015125.3	696	cGg/cAg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086101	16086101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	158	475	0	ENST00000281043.3:c.1277C>T	p.Ala426Val	p.A426V	ENST00000281043	NM_005378.4	426	gCc/gTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566889	212566889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	74	194	0	ENST00000342788.4:c.1292G>A	p.Gly431Asp	p.G431D	ENST00000342788	NM_005235.2	431	gGc/gAc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39713141	39713141	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	92	199	1	ENST00000361337.2:c.552del	p.Val185PhefsTer36	p.V185Ffs*36	ENST00000361337	NM_003286.2	183	Aaa/aa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37042526	37042530	+	frameshift_variant	Frame_Shift_Del	DEL	CTATG	CTATG	TATA			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	217	397	1	ENST00000231790.2:c.288_292delinsTATA	p.Tyr97IlefsTer11	p.Y97Ifs*11	ENST00000231790	NM_000249.3	96	acCTATGgc/acTATAgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1293637	1293637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	167	589	0	ENST00000310581.5:c.1364A>G	p.His455Arg	p.H455R	ENST00000310581	NM_198253.2	455	cAc/cGc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117630085	117630085	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	34	272	0	ENST00000368508.3:c.6441del	p.Phe2147LeufsTer4	p.F2147Lfs*4	ENST00000368508	NM_002944.2	2147	ttT/tt																																																																														
NBN	4683	MSKCC	GRCh37	8	90947826	90947826	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	85	257	0	ENST00000265433.3:c.2249del	p.Leu750Ter	p.L750*	ENST00000265433	NM_002485.4	750	tTa/ta																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562606	176562606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	106	566	0	ENST00000439151.2:c.502A>G	p.Met168Val	p.M168V	ENST00000439151	NM_022455.4	168	Atg/Gtg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2969697	2969697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	114	483	0	ENST00000396946.4:c.1582G>A	p.Glu528Lys	p.E528K	ENST00000396946	NM_032415.4	528	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	38	305	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780812	9780812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	143	498	1	ENST00000377346.4:c.1534C>T	p.Arg512Trp	p.R512W	ENST00000377346	NM_005026.3	512	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	114	344	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
EED	8726	MSKCC	GRCh37	11	85967458	85967458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	89	309	0	ENST00000263360.6:c.456G>T	p.Trp152Cys	p.W152C	ENST00000263360	NM_003797.3	152	tgG/tgT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602926	10602926	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	287	658	1	ENST00000171111.5:c.652G>T	p.Glu218Ter	p.E218*	ENST00000171111	NM_203500.1	218	Gag/Tag																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881686	111881686	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0039013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	110	508	0	ENST00000393256.3:c.364C>T	p.Gln122Ter	p.Q122*	ENST00000393256	NM_006538.4	122	Cag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675666	30675666	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	260	630	1	ENST00000376406.3:c.2690C>A	p.Ser897Tyr	p.S897Y	ENST00000376406	NM_014641.2	897	tCt/tAt																																																																														
BTK	695	MSKCC	GRCh37	X	100611146	100611146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	198	265	1	ENST00000308731.7:c.1460G>C	p.Arg487Thr	p.R487T	ENST00000308731	NM_000061.2	487	aGg/aCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	27	257	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779451	3779451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	93	962	1	ENST00000262367.5:c.5597G>A	p.Arg1866His	p.R1866H	ENST00000262367	NM_004380.2	1866	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0039021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	89	724	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584753	48584753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0039021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	44	289	0	ENST00000342988.3:c.831del	p.Pro278LeufsTer58	p.P278Lfs*58	ENST00000342988	NM_005359.5	277	acA/ac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120231	94120231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	25	166	0	ENST00000369303.4:c.820G>A	p.Asp274Asn	p.D274N	ENST00000369303	NM_004440.3	274	Gac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	49	178	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0039022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	97	292	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991337	72991337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	107	515	0	ENST00000268489.5:c.2708C>A	p.Thr903Lys	p.T903K	ENST00000268489	NM_006885.3	903	aCg/aAg																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139920	50139920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	221	980	1	ENST00000246792.3:c.409G>A	p.Val137Ile	p.V137I	ENST00000246792	NM_006270.3	137	Gtt/Att																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541702	187541702	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	44	305	0	ENST00000441802.2:c.6038T>C	p.Phe2013Ser	p.F2013S	ENST00000441802	NM_005245.3	2013	tTt/tCt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	137	458	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	165	653	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872909	35872909	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	39	324	0	ENST00000216797.5:c.323A>G	p.Asn108Ser	p.N108S	ENST00000216797	NM_020529.2	108	aAc/aGc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030557	48030557	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0039029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	21	222	0	ENST00000234420.5:c.3173-2A>T		p.X1058_splice	ENST00000234420	NM_000179.2	1058																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	90	347	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	265	580	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	270	471	2	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	190	228	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783347	9783347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148984508		P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	229	433	1	ENST00000377346.4:c.2591C>T	p.Pro864Leu	p.P864L	ENST00000377346	NM_005026.3	864	cCg/cTg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561571	9561571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	246	351	2	ENST00000353224.5:c.211G>A	p.Val71Ile	p.V71I	ENST00000353224	NM_177990.2	71	Gtt/Att																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226252097	226252099	+	missense_variant	Missense_Mutation	ONP	AGC	AGC	CGT			P-0039042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	35	76	0	ENST00000366813.1:c.45_47delinsCGT	p.Lys15_Ala16delinsAsnVal	p.K15_A16delinsNV	ENST00000366813		15	aaAGCa/aaCGTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	102	332	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	457	557	1	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	83	291	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																														
APC	324	MSKCC	GRCh37	5	112173730	112173730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	64	279	0	ENST00000257430.4:c.2442del	p.Phe814LeufsTer6	p.F814Lfs*6	ENST00000257430	NM_000038.5	813	aaT/aa																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114546	73114547	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	41	201	0	ENST00000356692.5:c.929_930del		p.X310_splice	ENST00000356692		310																																																																															
KNSTRN	90417	MSKCC	GRCh37	15	40675097	40675097	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	193	673	1	ENST00000249776.8:c.61G>T	p.Glu21Ter	p.E21*	ENST00000249776	NM_033286.3	21	Gag/Tag																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473726	67473726	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	223	531	0	ENST00000327367.4:c.806T>C	p.Phe269Ser	p.F269S	ENST00000327367	NM_005902.3	269	tTc/tCc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251986	153251986	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0039058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	115	391	0	ENST00000281708.4:c.1020del	p.Val341Ter	p.V341*	ENST00000281708	NM_033632.3	340	aaA/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426253	49426253	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	139	799	0	ENST00000301067.7:c.12235C>T	p.Gln4079Ter	p.Q4079*	ENST00000301067	NM_003482.3	4079	Caa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29664433	29664433	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	127	428	0	ENST00000358273.4:c.6477del	p.Lys2160AsnfsTer40	p.K2160Nfs*40	ENST00000358273	NM_001042492.2	2159	Ccc/cc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897417	78897417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	227	614	0	ENST00000306801.3:c.2752C>G	p.Pro918Ala	p.P918A	ENST00000306801	NM_020761.2	918	Cct/Gct																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584615	48584615	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	27	339	0	ENST00000342988.3:c.787+1G>A		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																															
MSH3	4437	MSKCC	GRCh37	5	80024718	80024718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	19	378	0	ENST00000265081.6:c.1502G>A	p.Cys501Tyr	p.C501Y	ENST00000265081	NM_002439.4	501	tGc/tAc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265551	152265551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	93	441	1	ENST00000206249.3:c.1004G>T	p.Arg335Ile	p.R335I	ENST00000206249	NM_000125.3	335	aGa/aTa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739896	41739896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	41	402	0	ENST00000242208.4:c.77C>A	p.Ser26Tyr	p.S26Y	ENST00000242208	NM_002192.2	26	tCc/tAc																																																																														
HGF	3082	MSKCC	GRCh37	7	81359076	81359076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	35	327	0	ENST00000222390.5:c.885C>A	p.Asp295Glu	p.D295E	ENST00000222390	NM_000601.4	295	gaC/gaA																																																																														
RB1	5925	MSKCC	GRCh37	13	49030485	49030485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0039064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	67	243	0	ENST00000267163.4:c.1960G>T	p.Val654Leu	p.V654L	ENST00000267163	NM_000321.2	654	Gtg/Ttg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939373	76939373	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0039064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	218	304	1	ENST00000373344.5:c.1375A>T	p.Lys459Ter	p.K459*	ENST00000373344	NM_000489.3	459	Aag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0039065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	125	471	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	129	573	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578218	7578218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	77	650	0	ENST00000269305.4:c.631A>G	p.Thr211Ala	p.T211A	ENST00000269305	NM_001126112.2	211	Act/Gct																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47612304	47612304	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0039065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	29	315	0	ENST00000263735.4:c.859-1G>T		p.X287_splice	ENST00000263735	NM_002354.2	287																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50459501	50459501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	47	280	0	ENST00000331340.3:c.790C>A	p.Leu264Met	p.L264M	ENST00000331340	NM_006060.4	264	Ctg/Atg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089705	27089706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1286891446		P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	108	692	0	ENST00000324856.7:c.2666dup	p.Met890HisfsTer46	p.M890Hfs*46	ENST00000324856	NM_006015.4	887	-/G																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101367	27101406	+	frameshift_variant	Frame_Shift_Del	DEL	CACGCCAGCCCCCATATGGTCCCTCTGCCCCTGTGCCCCC	CACGCCAGCCCCCATATGGTCCCTCTGCCCCTGTGCCCCC	-			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	85	680	0	ENST00000324856.7:c.4651_4690del	p.Arg1551Ter	p.R1551*	ENST00000324856	NM_006015.4	1550	aCACGCCAGCCCCCATATGGTCCCTCTGCCCCTGTGCCCCCc/ac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107017	27107017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	91	502	1	ENST00000324856.7:c.6628C>T	p.Gln2210Ter	p.Q2210*	ENST00000324856	NM_006015.4	2210	Cag/Tag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330629	65330630	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	51	290	0	ENST00000342505.4:c.1016dupA	p.Asn339LysfsTer2	p.N339Kfs*2	ENST00000342505	NM_002227.2	339	aat/aaAt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	51	374	0	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	17	155	0	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720876	89720876	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	90	338	0	ENST00000371953.3:c.1026+1G>T		p.X342_splice	ENST00000371953	NM_000314.4	342																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	122	533	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373313	118373313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	115	432	2	ENST00000534358.1:c.6706G>A	p.Ala2236Thr	p.A2236T	ENST00000534358	NM_005933.3	2236	Gct/Act																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906610	32906610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	69	383	0	ENST00000380152.3:c.995T>A	p.Ile332Asn	p.I332N	ENST00000380152		332	aTt/aAt																																																																														
RB1	5925	MSKCC	GRCh37	13	49050932	49050933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	74	358	0	ENST00000267163.4:c.2622dup	p.Leu875ThrfsTer4	p.L875Tfs*4	ENST00000267163	NM_000321.2	872	-/A																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138124	2138141	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TGGCCCTGCACGCAAATG	TGGCCCTGCACGCAAATG	-			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	250	808	1	ENST00000219476.3:c.5146_5160+3del		p.X1716_splice	ENST00000219476	NM_000548.3	1716																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3794922	3794922	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	69	394	0	ENST00000262367.5:c.3955C>T	p.Arg1319Ter	p.R1319*	ENST00000262367	NM_004380.2	1319	Cga/Tga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	95	524	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965124	81965124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	71	535	0	ENST00000359376.3:c.2604C>A	p.Asn868Lys	p.N868K	ENST00000359376	NM_002661.3	868	aaC/aaA																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134267	11134267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	138	655	0	ENST00000344626.4:c.2933G>A	p.Arg978Gln	p.R978Q	ENST00000344626	NM_003072.3	978	cGa/cAa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952540	17952540	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	80	615	0	ENST00000458235.1:c.893T>G	p.Ile298Ser	p.I298S	ENST00000458235	NM_000215.3	298	aTc/aGc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918760	50918760	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	122	807	0	ENST00000440232.2:c.2630A>C	p.Asp877Ala	p.D877A	ENST00000440232	NM_002691.3	877	gAt/gCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	128	541	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	14	306	1	ENST00000263967.3:c.1031T>C	p.Val344Ala	p.V344A	ENST00000263967	NM_006218.2	344	gTg/gCg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155582	56155582	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	52	337	0	ENST00000399503.3:c.674T>C	p.Met225Thr	p.M225T	ENST00000399503	NM_005921.1	225	aTg/aCg																																																																														
ETV1	2115	MSKCC	GRCh37	7	14027758	14027758	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	51	316	0	ENST00000405192.2:c.86T>C	p.Val29Ala	p.V29A	ENST00000405192	NM_001163147.1	29	gTc/gCc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274849	38274849	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779707422		P-0038629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	62	404	0	ENST00000425967.3:c.1731C>A	p.Asn577Lys	p.N577K	ENST00000425967	NM_001174067.1	577	aaC/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577043	7577044	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	161	693	0	ENST00000269305.4:c.894dup	p.Leu299AlafsTer7	p.L299Afs*7	ENST00000269305	NM_001126112.2	298	-/G																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246760	41246760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	41	432	0	ENST00000357654.3:c.788G>T	p.Gly263Val	p.G263V	ENST00000357654	NM_007294.3	263	gGt/gTt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554364	141554364	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	106	797	0	ENST00000220592.5:c.1787C>G	p.Ala596Gly	p.A596G	ENST00000220592	NM_012154.3	596	gCa/gGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	289	428	11				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0038810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	72	294	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40474482	40474482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	228	418	0	ENST00000264657.5:c.1919A>T	p.Tyr640Phe	p.Y640F	ENST00000264657	NM_139276.2	640	tAc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858168	9858168	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	134	544	0	ENST00000330684.3:c.3233A>C	p.Lys1078Thr	p.K1078T	ENST00000330684	NM_001134407.1	1078	aAg/aCg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32164809	32164809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	180	508	0	ENST00000375023.3:c.5093C>T	p.Thr1698Ile	p.T1698I	ENST00000375023	NM_004557.3	1698	aCa/aTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	49	268	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520155	9520155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	56	365	0	ENST00000353224.5:c.2114C>A	p.Pro705Gln	p.P705Q	ENST00000353224	NM_177990.2	705	cCa/cAa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222061	2222061	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	142	694	0	ENST00000398665.3:c.2893T>A	p.Leu965Met	p.L965M	ENST00000398665	NM_032482.2	965	Ttg/Atg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38953635	38953635	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	30	123	0	ENST00000357387.3:c.2718T>A	p.Cys906Ter	p.C906*	ENST00000357387	NM_152756.3	906	tgT/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	390	551	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
JUN	3725	MSKCC	GRCh37	1	59248736	59248736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	309	698	1	ENST00000371222.2:c.7G>A	p.Ala3Thr	p.A3T	ENST00000371222	NM_002228.3	3	Gca/Aca																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785683	50785683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	522	510	0	ENST00000398568.2:c.673G>A	p.Val225Ile	p.V225I	ENST00000398568	NM_001042412.1	225	Gtc/Atc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603134	48603154	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTCCAGCTATCAGTAAGTAT	GCTCCAGCTATCAGTAAGTAT	-			P-0038814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	137	401	0	ENST00000342988.3:c.1438_1447+11del		p.X480_splice	ENST00000342988	NM_005359.5	480																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0038815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	22	421	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
STK11	6794	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	54	764	0	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	104	620	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																														
ERF	2077	MSKCC	GRCh37	19	42754506	42754506	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	176	848	0	ENST00000222329.4:c.234C>A	p.Tyr78Ter	p.Y78*	ENST00000222329	NM_006494.2	78	taC/taA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828497	72828497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	46	701	2	ENST00000268489.5:c.8084G>A	p.Arg2695Gln	p.R2695Q	ENST00000268489	NM_006885.3	2695	cGg/cAg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	145	311	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525104	9525104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	201	459	1	ENST00000353224.5:c.1781C>T	p.Ser594Phe	p.S594F	ENST00000353224	NM_177990.2	594	tCc/tTc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781440	135781440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	58	524	1	ENST00000298552.3:c.1525C>T	p.Arg509Ter	p.R509*	ENST00000298552	NM_001162426.1	509	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692968	89692968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	217	498	2	ENST00000371953.3:c.452C>A	p.Ala151Asp	p.A151D	ENST00000371953	NM_000314.4	151	gCc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0038817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	219	534	0				ENST00000310581	NM_198253.2																																																																																
DIS3	22894	MSKCC	GRCh37	13	73346978	73346978	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0038817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	96	241	0	ENST00000377767.4:c.1240-1G>A		p.X414_splice	ENST00000377767	NM_014953.3	414																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66729084	66729101	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTAATTCATCTGGAGATC	CTAATTCATCTGGAGATC	-			P-0038817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	409	582	0	ENST00000307102.5:c.292_309del	p.Leu98_Ile103del	p.L98_I103del	ENST00000307102	NM_002755.3	98	CTAATTCATCTGGAGATC/-																																																																														
AXL	558	MSKCC	GRCh37	19	41754451	41754451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	326	714	0	ENST00000301178.4:c.1570G>A	p.Glu524Lys	p.E524K	ENST00000301178	NM_021913.4	524	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55225400	55225400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	230	473	1	ENST00000275493.2:c.1252C>T	p.His418Tyr	p.H418Y	ENST00000275493	NM_005228.3	418	Cat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	294	362	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572002	64572002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	323	726	7	ENST00000337652.1:c.1652C>T	p.Pro551Leu	p.P551L	ENST00000337652	NM_130803.2	551	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	245	468	1	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	245	468	1	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894916	101894916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	121	291	0	ENST00000374994.4:c.469C>T	p.Arg157Ter	p.R157*	ENST00000374994	NM_004612.2	157	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	220	385	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	325	719	1	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	279	679	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180037025	180037025	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	173	556	0	ENST00000261937.6:c.3687G>T	p.Arg1229Ser	p.R1229S	ENST00000261937	NM_182925.4	1229	agG/agT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210101	55210101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	44	363	0	ENST00000275493.2:c.211C>G	p.Gln71Glu	p.Q71E	ENST00000275493	NM_005228.3	71	Cag/Gag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69009287	69009287	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	320	401	0	ENST00000288368.4:c.2404G>C	p.Asp802His	p.D802H	ENST00000288368	NM_024870.2	802	Gat/Cat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486014	8486014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	173	506	0	ENST00000356435.5:c.2803G>T	p.Val935Phe	p.V935F	ENST00000356435		935	Gtc/Ttc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044848	47044848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	298	844	1	ENST00000329236.7:c.1940C>T	p.Pro647Leu	p.P647L	ENST00000329236	NM_001204466.1	647	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	352	619	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
PGR	5241	MSKCC	GRCh37	11	100999272	100999272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	386	719	0	ENST00000325455.5:c.530G>T	p.Gly177Val	p.G177V	ENST00000325455	NM_001202474.3	177	gGg/gTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509733	106509733	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	359	555	0	ENST00000359195.3:c.1728del	p.Trp576CysfsTer21	p.W576Cfs*21	ENST00000359195	NM_002649.2	576	tGg/tg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139410128	139410128	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	756	614	1	ENST00000277541.6:c.1710C>A	p.Cys570Ter	p.C570*	ENST00000277541	NM_017617.3	570	tgC/tgA																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412250	63412250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	340	819	1	ENST00000330258.3:c.917G>A	p.Gly306Glu	p.G306E	ENST00000330258	NM_152424.3	306	gGg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	129	532	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	54	290	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	150	524	2	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646279	3646279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	95	803	1	ENST00000294008.3:c.1799C>T	p.Pro600Leu	p.P600L	ENST00000294008	NM_032444.2	600	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112174533	112174533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	67	339	0	ENST00000257430.4:c.3242G>A	p.Ser1081Asn	p.S1081N	ENST00000257430	NM_000038.5	1081	aGc/aAc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	90	319	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398287	25398288	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	104	369	0	ENST00000256078.4:c.29_31dup	p.Gly10dup	p.G10dup	ENST00000256078	NM_033360.2	10	gct/gGAGct																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41274899	41274899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	120	348	0	ENST00000349496.5:c.1149G>T	p.Trp383Cys	p.W383C	ENST00000349496	NM_001904.3	383	tgG/tgT																																																																														
BARD1	580	MSKCC	GRCh37	2	215595191	215595191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	51	300	0	ENST00000260947.4:c.1945G>A	p.Glu649Lys	p.E649K	ENST00000260947	NM_000465.2	649	Gaa/Aaa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797721	45797721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	247	706	0	ENST00000372115.3:c.929C>T	p.Ser310Leu	p.S310L	ENST00000372115	NM_001048171.1	310	tCg/tTg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193219805	193219805	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	45	204	0	ENST00000367435.3:c.1560-1G>T		p.X520_splice	ENST00000367435	NM_024529.4	520																																																																															
SOX9	6662	MSKCC	GRCh37	17	70119952	70119953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	100	431	0	ENST00000245479.2:c.955dup	p.Tyr319LeufsTer259	p.Y319Lfs*259	ENST00000245479	NM_000346.3	318	-/T																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593388	48593408	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGTTGCACATAGGCAAAGGTG	GGTTGCACATAGGCAAAGGTG	-			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	68	258	0	ENST00000342988.3:c.1140-1_1159del		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																															
APC	324	MSKCC	GRCh37	5	112174607	112174607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	133	356	0	ENST00000257430.4:c.3316G>T	p.Gly1106Ter	p.G1106*	ENST00000257430	NM_000038.5	1106	Gga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	131	337	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	266	607	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0038847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	173	454	7	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39570433	39570433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	110	136	0	ENST00000262039.4:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000262039	NM_002647.2	210	cGa/cAa																																																																														
JUN	3725	MSKCC	GRCh37	1	59247810	59247811	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0038847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	335	621	0	ENST00000371222.2:c.932_933del	p.Lys311SerfsTer6	p.K311Sfs*6	ENST00000371222	NM_002228.3	311	aAA/a																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798348	45798348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	73	590	0	ENST00000372115.3:c.546G>T	p.Glu182Asp	p.E182D	ENST00000372115	NM_001048171.1	182	gaG/gaT																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939444	71939444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	321	718	2	ENST00000298229.2:c.299G>T	p.Gly100Val	p.G100V	ENST00000298229	NM_001567.3	100	gGc/gTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133245455	133245456	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0038847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	206	583	0	ENST00000320574.5:c.1864_1865del	p.Ile622LeufsTer33	p.I622Lfs*33	ENST00000320574	NM_006231.2	622	ATc/c																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279907	18279907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	48	565	0	ENST00000222254.8:c.1990G>A	p.Asp664Asn	p.D664N	ENST00000222254	NM_005027.3	664	Gac/Aac																																																																														
APC	324	MSKCC	GRCh37	5	112174171	112174175	+	frameshift_variant	Frame_Shift_Del	DEL	AAATG	AAATG	-			P-0038847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	231	318	0	ENST00000257430.4:c.2881_2885del	p.Asn961Ter	p.N961*	ENST00000257430	NM_000038.5	960	tcAAATGat/tcat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	527	591	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0038848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	142	294	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
AR	367	MSKCC	GRCh37	X	66766187	66766187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	22	213	0	ENST00000374690.3:c.1199C>T	p.Ala400Val	p.A400V	ENST00000374690	NM_000044.3	400	gCg/gTg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988193	36988193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	232	433	0	ENST00000354822.5:c.460G>A	p.Ala154Thr	p.A154T	ENST00000354822	NM_001079668.2	154	Gcc/Acc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814810	139814810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1382	241	638	0	ENST00000247668.2:c.803T>C	p.Leu268Pro	p.L268P	ENST00000247668	NM_021138.3	268	cTc/cCc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	75	357	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0038852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	11	443	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602869	10602869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	99	815	0	ENST00000171111.5:c.709C>G	p.Leu237Val	p.L237V	ENST00000171111	NM_203500.1	237	Ctg/Gtg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47088006	47088007	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	72	447	0	ENST00000409792.3:c.7068dup	p.Ala2357CysfsTer12	p.A2357Cfs*12	ENST00000409792	NM_014159.6	2356	-/T																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	59	576	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	74	465	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690801	89690801	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	47	242	1	ENST00000371953.3:c.210-2A>T		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
MGA	23269	MSKCC	GRCh37	15	42041565	42041566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	80	470	1	ENST00000219905.7:c.5764dup	p.Ile1922AsnfsTer4	p.I1922Nfs*4	ENST00000219905	NM_001164273.1	1920	-/A																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830775	72830778	+	frameshift_variant	Frame_Shift_Del	DEL	TGCG	TGCG	-			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	84	495	0	ENST00000268489.5:c.5803_5806del	p.Arg1935LeufsTer61	p.R1935Lfs*61	ENST00000268489	NM_006885.3	1935	CGCAtt/tt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15975464	15975464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	76	387	0	ENST00000268712.3:c.3890T>C	p.Met1297Thr	p.M1297T	ENST00000268712	NM_006311.3	1297	aTg/aCg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110315	3110315	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	89	520	0	ENST00000078429.4:c.305A>T	p.Lys102Met	p.K102M	ENST00000078429	NM_002067.2	102	aAg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55269429	55269429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	104	703	1	ENST00000275493.2:c.3116G>A	p.Ser1039Asn	p.S1039N	ENST00000275493	NM_005228.3	1039	aGt/aAt																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38137058	38137058	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	40	416	1	ENST00000317025.8:c.3760G>A	p.Gly1254Arg	p.G1254R	ENST00000317025	NM_023034.1	1254	Ggg/Agg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	25	267	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1218439	1218439	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	43	463	0	ENST00000326873.7:c.314T>A	p.Leu105Ter	p.L105*	ENST00000326873	NM_000455.4	105	tTa/tAa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096881	11096881	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	66	691	0	ENST00000344626.4:c.374del	p.Gly125ValfsTer178	p.G125Vfs*178	ENST00000344626	NM_003072.3	124	ctG/ct																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467531	66467532	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0038858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	26	232	1	ENST00000273854.3:c.737_738delinsAA	p.Thr246Lys	p.T246K	ENST00000273854	NM_004439.5	246	aCC/aAA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056221	27056222	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACCTCCGTCAGGAC			P-0038859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	62	441	0	ENST00000324856.7:c.1218_1231dup	p.Pro411HisfsTer27	p.P411Hfs*27	ENST00000324856	NM_006015.4	406	gga/ggACCTCCGTCAGGACa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089488	27089489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	100	505	0	ENST00000324856.7:c.2445dup	p.Asn816Ter	p.N816*	ENST00000324856	NM_006015.4	815	tat/taTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685271	89685271	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0038859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	45	149	1	ENST00000371953.3:c.170delT	p.Leu57TrpfsTer42	p.L57Wfs*42	ENST00000371953	NM_000314.4	56	Ttt/tt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	56	256	0	ENST00000371953.3:c.801+1G>T		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	43	256	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	13	368	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654625	67654625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	96	313	0	ENST00000264010.4:c.1112G>A	p.Arg371His	p.R371H	ENST00000264010	NM_006565.3	371	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210848	36210848	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	126	632	0	ENST00000222270.7:c.601del	p.Gln201ArgfsTer38	p.Q201Rfs*38	ENST00000222270	NM_014727.1	200	gCc/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927451	178927451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	136	314	0	ENST00000263967.3:c.1214C>T	p.Ser405Phe	p.S405F	ENST00000263967	NM_006218.2	405	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	137	241	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	347	550	1	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	211	525	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	1884	443	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952049	178952049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	62	300	0	ENST00000263967.3:c.3104C>T	p.Ala1035Val	p.A1035V	ENST00000263967	NM_006218.2	1035	gCt/gTt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737650	145737650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	216	672	0	ENST00000428558.2:c.3113G>A	p.Arg1038His	p.R1038H	ENST00000428558	NM_004260.3	1038	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	190	494	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588624	28588624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	172	358	0	ENST00000241453.7:c.2824T>C	p.Phe942Leu	p.F942L	ENST00000241453	NM_004119.2	942	Ttt/Ctt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713251	43713251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	85	570	0	ENST00000382044.4:c.4222C>T	p.Arg1408Cys	p.R1408C	ENST00000382044	NM_001141980.1	1408	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	140	236	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SESN2	83667	MSKCC	GRCh37	1	28600565	28600565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	223	380	0	ENST00000253063.3:c.916C>T	p.Pro306Ser	p.P306S	ENST00000253063	NM_031459.4	306	Ccc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	44	263	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266512	198266512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	38	211	0	ENST00000335508.6:c.2324G>T	p.Arg775Leu	p.R775L	ENST00000335508	NM_012433.2	775	cGa/cTa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	17	212	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045533	47045533	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	62	198	0	ENST00000329236.7:c.2266A>T	p.Lys756Ter	p.K756*	ENST00000329236	NM_001204466.1	756	Aag/Tag																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39322619	39322619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	57	360	0	ENST00000373001.3:c.373G>T	p.Asp125Tyr	p.D125Y	ENST00000373001	NM_022157.3	125	Gac/Tac																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933246	49933246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	63	482	1	ENST00000296474.3:c.2864A>G	p.Gln955Arg	p.Q955R	ENST00000296474	NM_002447.2	955	cAg/cGg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1325493	1325493	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0038945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	49	301	0	ENST00000381566.1:c.183-1G>T		p.X61_splice	ENST00000381566		61																																																																															
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0031102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			349	233	527	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0031102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			245	113	339	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175141	112175141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			121	25	183	0	ENST00000257430.4:c.3850G>T	p.Glu1284Ter	p.E1284*	ENST00000257430	NM_000038.5	1284	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108201068	108201068	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031102-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			206	57	306	0	ENST00000278616.4:c.7435G>T	p.Glu2479Ter	p.E2479*	ENST00000278616	NM_000051.3	2479	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	255	636	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	331	775	0	ENST00000269571.5:c.829G>T	p.Asp277Tyr	p.D277Y	ENST00000269571		277	Gac/Tac																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0037866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	40	285	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5022007	5022007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			548	66	304	0	ENST00000381652.3:c.20C>T	p.Thr7Met	p.T7M	ENST00000381652	NM_004972.3	7	aCg/aTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024703	31024703	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	153	504	1	ENST00000375687.4:c.4190del	p.Gly1397ValfsTer53	p.G1397Vfs*53	ENST00000375687	NM_015338.5	1396	gtG/gt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444455	50444455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	95	279	0	ENST00000331340.3:c.385C>T	p.Pro129Ser	p.P129S	ENST00000331340	NM_006060.4	129	Ccc/Tcc																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006098	22006098	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			662	100	435	0	ENST00000276925.6:c.305C>G	p.Ala102Gly	p.A102G	ENST00000276925	NM_004936.3	102	gCc/gGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44733211	44733211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037866-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	23	194	0	ENST00000377967.4:c.204del	p.Thr69ArgfsTer15	p.T69Rfs*15	ENST00000377967	NM_021140.2	68	aGg/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	233	919	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	294	769	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	161	795	1	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741915	17741915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	75	255	0	ENST00000250003.3:c.586G>A	p.Asp196Asn	p.D196N	ENST00000250003	NM_002478.4	196	Gac/Aac																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	47	895	3	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772951	135772951	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	93	380	0	ENST00000298552.3:c.2672del	p.Asn891ThrfsTer40	p.N891Tfs*40	ENST00000298552	NM_001162426.1	891	aAc/ac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107096	27107096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	26	543	0	ENST00000324856.7:c.6707G>C	p.Arg2236Pro	p.R2236P	ENST00000324856	NM_006015.4	2236	cGc/cCc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	126	681	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
CCND3	896	MSKCC	GRCh37	6	41903745	41903746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	161	817	0	ENST00000372991.4:c.811dupC	p.Arg271ProfsTer53	p.R271Pfs*53	ENST00000372991	NM_001760.3	271	cgg/cCgg																																																																														
ABL1	25	MSKCC	GRCh37	9	133759905	133759905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	44	885	1	ENST00000318560.5:c.2228C>T	p.Thr743Met	p.T743M	ENST00000318560	NM_005157.4	743	aCg/aTg																																																																														
ALK	238	MSKCC	GRCh37	2	29416659	29416659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	105	434	0	ENST00000389048.3:c.4294C>T	p.Arg1432Trp	p.R1432W	ENST00000389048	NM_004304.4	1432	Cgg/Tgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	32	641	1	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210697	36210697	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	173	864	1	ENST00000222270.7:c.448C>T	p.Arg150Ter	p.R150*	ENST00000222270	NM_014727.1	150	Cga/Tga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129400	2129400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	148	882	2	ENST00000219476.3:c.3259del	p.Glu1087SerfsTer16	p.E1087Sfs*16	ENST00000219476	NM_000548.3	1085	tcG/tc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739012	145739012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	47	747	0	ENST00000428558.2:c.2143C>T	p.Arg715Trp	p.R715W	ENST00000428558	NM_004260.3	715	Cgg/Tgg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921541	39921541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	177	805	0	ENST00000378444.4:c.4279C>T	p.Pro1427Ser	p.P1427S	ENST00000378444	NM_001123385.1	1427	Cca/Tca																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858503	27858503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	58	367	0	ENST00000359303.2:c.68C>T	p.Thr23Ile	p.T23I	ENST00000359303	NM_003535.2	23	aCc/aTc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912186	114912186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	42	602	0	ENST00000543371.1:c.1256C>T	p.Ala419Val	p.A419V	ENST00000543371	NM_001198531.1	419	gCg/gTg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850965	63850965	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	118	628	0	ENST00000279873.7:c.1746del	p.Phe582LeufsTer47	p.F582Lfs*47	ENST00000279873	NM_032199.2	581	tgT/tg																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112767332	112767332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	57	468	0	ENST00000369452.4:c.1205C>T	p.Thr402Ile	p.T402I	ENST00000369452	NM_007373.3	402	aCc/aTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133219486	133219487	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	193	880	0	ENST00000320574.5:c.4647dup	p.Lys1550GlnfsTer11	p.K1550Qfs*11	ENST00000320574	NM_006231.2	1549	-/C																																																																														
BLM	641	MSKCC	GRCh37	15	91312717	91312717	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	93	406	0	ENST00000355112.3:c.2456A>G	p.Gln819Arg	p.Q819R	ENST00000355112	NM_000057.2	819	cAg/cGg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347755	347755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	146	994	2	ENST00000262320.3:c.1751C>A	p.Ala584Asp	p.A584D	ENST00000262320	NM_003502.3	584	gCt/gAt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646713	23646713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	26	612	0	ENST00000261584.4:c.1154C>T	p.Ala385Val	p.A385V	ENST00000261584	NM_024675.3	385	gCa/gTa																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134381	30134381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	43	826	0	ENST00000263025.4:c.150G>T	p.Glu50Asp	p.E50D	ENST00000263025	NM_002746.2	50	gaG/gaT																																																																														
CDH1	999	MSKCC	GRCh37	16	68863665	68863665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	119	603	0	ENST00000261769.5:c.2404G>A	p.Ala802Thr	p.A802T	ENST00000261769	NM_004360.3	802	Gcc/Acc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56412983	56412983	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	90	381	1	ENST00000348428.3:c.1997A>G	p.His666Arg	p.H666R	ENST00000348428	NM_006785.3	666	cAt/cGt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223673	36223673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	50	1111	0	ENST00000222270.7:c.6223G>A	p.Val2075Met	p.V2075M	ENST00000222270	NM_014727.1	2075	Gtg/Atg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855577	45855577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	234	890	0	ENST00000391945.4:c.2080C>T	p.Pro694Ser	p.P694S	ENST00000391945	NM_000400.3	694	Ccc/Tcc																																																																														
CASP8	841	MSKCC	GRCh37	2	202149570	202149570	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	61	469	0	ENST00000358485.4:c.1014del	p.Phe338LeufsTer11	p.F338Lfs*11	ENST00000358485	NM_001080125.1	337	caT/ca																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164877	36164877	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200104203		P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	187	1011	0	ENST00000300305.3:c.998C>T	p.Pro333Leu	p.P333L	ENST00000300305		333	cCg/cTg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42861448	42861448	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	108	579	0	ENST00000398585.3:c.422T>G	p.Leu141Arg	p.L141R	ENST00000398585	NM_001135099.1	141	cTa/cGa																																																																														
CRKL	1399	MSKCC	GRCh37	22	21304083	21304083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	39	676	0	ENST00000354336.3:c.862T>C	p.Phe288Leu	p.F288L	ENST00000354336	NM_005207.3	288	Ttt/Ctt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149439387	149439387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	120	730	3	ENST00000286301.3:c.2008G>A	p.Asp670Asn	p.D670N	ENST00000286301	NM_005211.3	670	Gac/Aac																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520286	176520286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	66	783	0	ENST00000292408.4:c.1205C>T	p.Pro402Leu	p.P402L	ENST00000292408	NM_213647.1	402	cCg/cTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323308	31323308	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	59	149	0	ENST00000412585.2:c.681C>A	p.Cys227Ter	p.C227*	ENST00000412585	NM_005514.6	227	tgC/tgA																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38194848	38194848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	41	604	0	ENST00000317025.8:c.885G>T	p.Glu295Asp	p.E295D	ENST00000317025	NM_023034.1	295	gaG/gaT																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104654	69104654	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	121	660	0	ENST00000288368.4:c.4498A>G	p.Asn1500Asp	p.N1500D	ENST00000288368	NM_024870.2	1500	Aac/Gac																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864898	117864898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	116	406	0	ENST00000297338.2:c.1211G>A	p.Arg404Lys	p.R404K	ENST00000297338	NM_006265.2	404	aGg/aAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409816	139409816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	56	1036	1	ENST00000277541.6:c.1940G>A	p.Ser647Asn	p.S647N	ENST00000277541	NM_017617.3	647	aGc/aAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937221	76937221	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	71	521	1	ENST00000373344.5:c.3527del	p.Lys1176ArgfsTer14	p.K1176Rfs*14	ENST00000373344	NM_000489.3	1176	aAg/ag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	103	489	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63817057	63817057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	44	229	0	ENST00000279873.7:c.1028C>G	p.Pro343Arg	p.P343R	ENST00000279873	NM_032199.2	343	cCc/cGc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	40	231	3	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	85	328	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	100	481	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	61	361	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	70	316	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
MITF	4286	MSKCC	GRCh37	3	70005681	70005681	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	48	316	0	ENST00000352241.4:c.1013C>T	p.Pro338Leu	p.P338L	ENST00000352241	NM_198159.2	338	cCa/cTa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	61	346	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	158	623	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161718	47161718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	48	287	0	ENST00000409792.3:c.4408C>T	p.Pro1470Ser	p.P1470S	ENST00000409792	NM_014159.6	1470	Cca/Tca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916845	178916845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	59	522	0	ENST00000263967.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000263967	NM_006218.2	78	Gaa/Aaa																																																																														
CASP8	841	MSKCC	GRCh37	2	202150022	202150022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	133	473	0	ENST00000358485.4:c.1463T>C	p.Leu488Pro	p.L488P	ENST00000358485	NM_001080125.1	488	cTg/cCg																																																																														
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	52	339	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																														
SRC	6714	MSKCC	GRCh37	20	36026147	36026147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	131	659	0	ENST00000358208.4:c.749C>T	p.Thr250Met	p.T250M	ENST00000358208		250	aCg/aTg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265049	46265049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	155	407	0	ENST00000371998.3:c.1924del	p.Leu642Ter	p.L642*	ENST00000371998		640	tCc/tc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	79	564	5	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830807	72830807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	100	550	0	ENST00000268489.5:c.5774del	p.Gly1925ValfsTer72	p.G1925Vfs*72	ENST00000268489	NM_006885.3	1925	gGt/gt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	229	592	7	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
AURKB	9212	MSKCC	GRCh37	17	8111056	8111056	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	150	601	0	ENST00000585124.1:c.151G>T	p.Ala51Ser	p.A51S	ENST00000585124	NM_004217.3	51	Gct/Tct																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520704	176520704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	124	590	0	ENST00000292408.4:c.1447C>T	p.Arg483Cys	p.R483C	ENST00000292408	NM_213647.1	483	Cgt/Tgt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435162	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	113	594	0	ENST00000407977.2:c.1975_1976delGG	p.Gly659SerfsTer87	p.G659Sfs*87	ENST00000407977		659	GGt/t																																																																														
RIT1	6016	MSKCC	GRCh37	1	155880271	155880271	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	62	353	0	ENST00000368323.3:c.133C>T	p.Arg45Ter	p.R45*	ENST00000368323	NM_006912.5	45	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426730	49426735	+	inframe_deletion	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	rs1227360953		P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	40	288	0	ENST00000301067.7:c.11753_11758del	p.Gln3918_Gln3919del	p.Q3918_Q3919del	ENST00000301067	NM_003482.3	3918	cAGCAGCta/cta																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937249	36937249	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	86	581	0	ENST00000361632.4:c.1072-2A>G		p.X358_splice	ENST00000361632		358																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49433994	49433994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	115	594	1	ENST00000301067.7:c.7559G>A	p.Arg2520Gln	p.R2520Q	ENST00000301067	NM_003482.3	2520	cGg/cAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678458	88678458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	103	586	0	ENST00000360948.2:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000360948	NM_001012338.2	360	Gag/Aag																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615692	1615692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	297	701	1	ENST00000344749.5:c.1579C>T	p.Arg527Trp	p.R527W	ENST00000344749	NM_001136139.2	527	Cgg/Tgg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45871985	45871985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	104	464	0	ENST00000391945.4:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000391945	NM_000400.3	88	cGa/cAa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803187	1803187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	115	601	2	ENST00000260795.2:c.539G>A	p.Gly180Asp	p.G180D	ENST00000260795		180	gGc/gAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535457	66535457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	104	376	0	ENST00000273854.3:c.4C>T	p.Arg2Trp	p.R2W	ENST00000273854	NM_004439.5	2	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112177620	112177620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	27	335	0	ENST00000257430.4:c.6329C>A	p.Ser2110Tyr	p.S2110Y	ENST00000257430	NM_000038.5	2110	tCc/tAc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505058	149505058	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	85	524	0	ENST00000261799.4:c.1757A>G	p.Gln586Arg	p.Q586R	ENST00000261799	NM_002609.3	586	cAg/cGg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138197301	138197301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	80	253	0	ENST00000237289.4:c.803C>T	p.Pro268Leu	p.P268L	ENST00000237289	NM_001270507.1	268	cCt/cTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151843732	151843732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	73	355	0	ENST00000262189.6:c.13983G>T	p.Glu4661Asp	p.E4661D	ENST00000262189	NM_170606.2	4661	gaG/gaT																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	209	430	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	17	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	313	711	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061406	38061406	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	166	670	0	ENST00000250448.2:c.583G>C	p.Glu195Gln	p.E195Q	ENST00000250448	NM_004496.3	195	Gag/Cag																																																																														
NF1	4763	MSKCC	GRCh37	17	29588864	29588864	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	74	293	0	ENST00000358273.4:c.4713A>T	p.Glu1571Asp	p.E1571D	ENST00000358273	NM_001042492.2	1571	gaA/gaT																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72861930	72861930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	105	441	0	ENST00000325599.8:c.952C>G	p.His318Asp	p.H318D	ENST00000325599	NM_018130.2	318	Cat/Gat																																																																														
TP63	8626	MSKCC	GRCh37	3	189586425	189586425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	134	444	0	ENST00000264731.3:c.1049G>A	p.Arg350Lys	p.R350K	ENST00000264731	NM_003722.4	350	aGa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	203	389	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
CDH1	999	MSKCC	GRCh37	16	68772299	68772299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	153	943	0	ENST00000261769.5:c.148C>T	p.Arg50Cys	p.R50C	ENST00000261769	NM_004360.3	50	Cgc/Tgc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176175762	176175762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	218	886	0	ENST00000367669.3:c.353C>T	p.Pro118Leu	p.P118L	ENST00000367669	NM_022457.5	118	cCc/cTc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845553	63845553	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	71	306	0	ENST00000279873.7:c.1292A>G	p.Glu431Gly	p.E431G	ENST00000279873	NM_032199.2	431	gAa/gGa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518783	176518783	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199935139		P-0038959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	415	799	2	ENST00000292408.4:c.701G>A	p.Arg234His	p.R234H	ENST00000292408	NM_213647.1	234	cGc/cAc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520260	9520260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	189	410	2	ENST00000353224.5:c.2009C>T	p.Ser670Phe	p.S670F	ENST00000353224	NM_177990.2	670	tCt/tTt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129303	152129303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	340	708	1	ENST00000206249.3:c.256G>A	p.Ala86Thr	p.A86T	ENST00000206249	NM_000125.3	86	Gct/Act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	153	422	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	414	724	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	104	238	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																														
APC	324	MSKCC	GRCh37	5	112174494	112174494	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	95	270	0	ENST00000257430.4:c.3203C>G	p.Ser1068Ter	p.S1068*	ENST00000257430	NM_000038.5	1068	tCa/tGa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	31	276	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	38	579	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	78	662	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
PAK1	5058	MSKCC	GRCh37	11	77064592	77064592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	29	373	0	ENST00000356341.3:c.825G>T	p.Lys275Asn	p.K275N	ENST00000356341	NM_002576.4	275	aaG/aaT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878464	151878464	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	65	600	1	ENST00000262189.6:c.6481C>T	p.Gln2161Ter	p.Q2161*	ENST00000262189	NM_170606.2	2161	Caa/Taa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321707	62321707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	55	686	0	ENST00000508582.2:c.2398G>A	p.Glu800Lys	p.E800K	ENST00000508582		800	Gag/Aag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980413	201980413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	63	678	0	ENST00000359651.3:c.149C>T	p.Ser50Leu	p.S50L	ENST00000359651		50	tCa/tTa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123324046	123324046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	55	462	0	ENST00000358487.5:c.424G>A	p.Asp142Asn	p.D142N	ENST00000358487	NM_000141.4	142	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420789	49420789	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	90	499	0	ENST00000301067.7:c.14960G>A	p.Trp4987Ter	p.W4987*	ENST00000301067	NM_003482.3	4987	tGg/tAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420809	49420809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	90	475	0	ENST00000301067.7:c.14940G>C	p.Lys4980Asn	p.K4980N	ENST00000301067	NM_003482.3	4980	aaG/aaC																																																																														
INHA	3623	MSKCC	GRCh37	2	220437355	220437355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	71	755	0	ENST00000243786.2:c.259C>G	p.Pro87Ala	p.P87A	ENST00000243786	NM_002191.3	87	Cca/Gca																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24145513	24145513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	69	584	0	ENST00000263121.7:c.532G>C	p.Glu178Gln	p.E178Q	ENST00000263121	NM_003073.3	178	Gag/Cag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534481	187534481	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	24	333	0	ENST00000441802.2:c.9245C>G	p.Ser3082Ter	p.S3082*	ENST00000441802	NM_005245.3	3082	tCa/tGa																																																																														
CCND3	896	MSKCC	GRCh37	6	41909369	41909369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	48	444	0	ENST00000372991.4:c.19G>T	p.Glu7Ter	p.E7*	ENST00000372991	NM_001760.3	7	Gaa/Taa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226217	53226217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	94	653	0	ENST00000375401.3:c.2632G>A	p.Glu878Lys	p.E878K	ENST00000375401	NM_004187.3	878	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76874386	76874386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	22	442	0	ENST00000373344.5:c.5336G>A	p.Arg1779Lys	p.R1779K	ENST00000373344	NM_000489.3	1779	aGa/aAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123196788	123196788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	22	384	0	ENST00000218089.9:c.1675G>A	p.Asp559Asn	p.D559N	ENST00000218089	NM_001042749.1	559	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	548	389	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0038966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	449	631	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	247	458	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	315	424	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910849	32910849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	159	439	0	ENST00000380152.3:c.2357C>G	p.Ser786Cys	p.S786C	ENST00000380152		786	tCt/tGt																																																																														
MSI2	124540	MSKCC	GRCh37	17	55335635	55335635	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	379	583	0	ENST00000284073.2:c.190T>G	p.Phe64Val	p.F64V	ENST00000284073	NM_138962.2	64	Ttc/Gtc																																																																														
CASP8	841	MSKCC	GRCh37	2	202149599	202149599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	582	513	0	ENST00000358485.4:c.1040C>A	p.Thr347Lys	p.T347K	ENST00000358485	NM_001080125.1	347	aCa/aAa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326773	62326773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1338	667	835	0	ENST00000508582.2:c.3664G>A	p.Glu1222Lys	p.E1222K	ENST00000508582		1222	Gag/Aag																																																																														
MET	4233	MSKCC	GRCh37	7	116398560	116398560	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	167	526	0	ENST00000397752.3:c.2150C>G	p.Ser717Ter	p.S717*	ENST00000397752	NM_000245.2	717	tCa/tGa																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205652	38205652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	565	723	0	ENST00000317025.8:c.38G>C	p.Gly13Ala	p.G13A	ENST00000317025	NM_023034.1	13	gGa/gCa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0038967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	91	549	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ERG	2078	MSKCC	GRCh37	21	39755326	39755326	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0038967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	38	426	0	ENST00000288319.7:c.1439A>T	p.Ter480LeuextTer79	p.*480Lext*79	ENST00000288319	NM_182918.3	480	tAa/tTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717757	89717758	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	50	352	0	ENST00000371953.3:c.783_784del	p.Asn262GlnfsTer35	p.N262Qfs*35	ENST00000371953	NM_000314.4	261	cAG/c																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0038967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	43	359	0				ENST00000310581	NM_198253.2																																																																																
SDHB	6390	MSKCC	GRCh37	1	17355107	17355107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	50	456	0	ENST00000375499.3:c.411G>T	p.Lys137Asn	p.K137N	ENST00000375499	NM_003000.2	137	aaG/aaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624263	89624264	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0038967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	32	304	0	ENST00000371953.3:c.39_40del	p.Arg14GlufsTer29	p.R14Efs*29	ENST00000371953	NM_000314.4	13	AAa/a																																																																														
CIC	23152	MSKCC	GRCh37	19	42796286	42796287	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	70	687	2	ENST00000575354.2:c.2935_2936delinsTT	p.Pro979Leu	p.P979L	ENST00000575354	NM_015125.3	979	CCg/TTg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931477	131931477	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	65	410	0	ENST00000265335.6:c.2182G>T	p.Glu728Ter	p.E728*	ENST00000265335		728	Gaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499829	8499829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	60	413	0	ENST00000356435.5:c.2140C>T	p.Pro714Ser	p.P714S	ENST00000356435		714	Cct/Tct																																																																														
TSC2	7249	MSKCC	GRCh37	16	2107145	2107145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	113	910	2	ENST00000219476.3:c.814G>A	p.Ala272Thr	p.A272T	ENST00000219476	NM_000548.3	272	Gcc/Acc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245912888	245912888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	21	412	1	ENST00000388985.4:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000388985		422	Gac/Aac																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515195	31515195	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	95	801	0	ENST00000344624.3:c.1190C>G	p.Pro397Arg	p.P397R	ENST00000344624		397	cCt/cGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44919335	44919335	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	49	264	0	ENST00000377967.4:c.1264del	p.Ala422ArgfsTer17	p.A422Rfs*17	ENST00000377967	NM_021140.2	421	gaG/ga																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	108	805	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0038970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	119	930	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55153609	55153609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	97	623	0	ENST00000257290.5:c.2575G>A	p.Val859Met	p.V859M	ENST00000257290	NM_006206.4	859	Gtg/Atg																																																																														
ATM	472	MSKCC	GRCh37	11	108129782	108129783	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0038970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	37	515	1	ENST00000278616.4:c.2446_2447delinsTT	p.Ala816Leu	p.A816L	ENST00000278616	NM_000051.3	816	GCa/TTa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932459	39932459	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs140858321		P-0038970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	99	945	0	ENST00000378444.4:c.2140G>C	p.Val714Leu	p.V714L	ENST00000378444	NM_001123385.1	714	Gtg/Ctg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593578	55593606	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAGAAACCCATGTATGAAGTACAGTGGA	ACAGAAACCCATGTATGAAGTACAGTGGA	-			P-0038980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	97	396	0	ENST00000288135.5:c.1648-3_1673del		p.X550_splice	ENST00000288135	NM_000222.2	550																																																																															
CCND1	595	MSKCC	GRCh37	11	69456188	69456188	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	105	591	0	ENST00000227507.2:c.107A>G	p.Glu36Gly	p.E36G	ENST00000227507	NM_053056.2	36	gAg/gGg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	11	277	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	21	343	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094445	27094446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	38	505	0	ENST00000324856.7:c.3154dupT	p.Tyr1052LeufsTer53	p.Y1052Lfs*53	ENST00000324856	NM_006015.4	1051	-/T																																																																														
HRAS	3265	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	28	630	0	ENST00000311189.7:c.38G>T	p.Gly13Val	p.G13V	ENST00000311189		13	gGt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023676	27023676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	41	477	1	ENST00000324856.7:c.782C>A	p.Ser261Ter	p.S261*	ENST00000324856	NM_006015.4	261	tCg/tAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296299	15296300	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0038982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	39	650	0	ENST00000263388.2:c.2142_2143insT	p.Gly715TrpfsTer7	p.G715Wfs*7	ENST00000263388	NM_000435.2	714	-/T																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	120	260	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	125	718	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	67	387	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76939457	76939457	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	90	619	0	ENST00000373344.5:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000373344	NM_000489.3	431	Gag/Tag																																																																														
STK19	8859	MSKCC	GRCh37	6	31948302	31948302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	78	619	0	ENST00000375331.2:c.878G>T	p.Arg293Ile	p.R293I	ENST00000375331	NM_004197.1	293	aGa/aTa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11182156	11182156	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	104	651	0	ENST00000361445.4:c.6690A>T	p.Leu2230Phe	p.L2230F	ENST00000361445	NM_004958.3	2230	ttA/ttT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352428	118352428	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	42	201	0	ENST00000534358.1:c.3635-2A>T		p.X1212_splice	ENST00000534358	NM_005933.3	1212																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30135320	30135320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	102	407	0	ENST00000331968.5:c.498G>T	p.Met166Ile	p.M166I	ENST00000331968	NM_002742.2	166	atG/atT																																																																														
NF1	4763	MSKCC	GRCh37	17	29685544	29685544	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	61	457	0	ENST00000358273.4:c.8017C>T	p.Gln2673Ter	p.Q2673*	ENST00000358273	NM_001042492.2	2673	Caa/Taa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39584409	39584409	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	52	377	0	ENST00000262039.4:c.1074G>T	p.Met358Ile	p.M358I	ENST00000262039	NM_002647.2	358	atG/atT																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615740	1615740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	109	742	2	ENST00000344749.5:c.1531G>A	p.Ala511Thr	p.A511T	ENST00000344749	NM_001136139.2	511	Gct/Act																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033768	48033768	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	58	319	0	ENST00000234420.5:c.3979A>T	p.Asn1327Tyr	p.N1327Y	ENST00000234420	NM_000179.2	1327	Aat/Tat																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99156032	99156032	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	93	598	1	ENST00000074304.5:c.712A>T	p.Thr238Ser	p.T238S	ENST00000074304	NM_001134224.1	238	Act/Tct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495264	212495264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	65	423	0	ENST00000342788.4:c.2002G>T	p.Gly668Cys	p.G668C	ENST00000342788	NM_005235.2	668	Ggt/Tgt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023778	31023778	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	102	598	0	ENST00000375687.4:c.3263A>T	p.Gln1088Leu	p.Q1088L	ENST00000375687	NM_015338.5	1088	cAg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827970	40827970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	81	447	0	ENST00000373198.4:c.2458G>T	p.Val820Leu	p.V820L	ENST00000373198	NM_133170.3	820	Gtg/Ttg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445085	89445085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	57	325	0	ENST00000336596.2:c.1405G>C	p.Asp469His	p.D469H	ENST00000336596	NM_005233.5	469	Gac/Cac																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	78	406	0	ENST00000398015.3:c.251G>T	p.Arg84Leu	p.R84L	ENST00000398015	NM_004441.4	84	cGc/cTc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030346	180030346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	125	703	0	ENST00000261937.6:c.3938C>G	p.Pro1313Arg	p.P1313R	ENST00000261937	NM_182925.4	1313	cCt/cGt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686791	117686791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	43	431	0	ENST00000368508.3:c.2926G>T	p.Asp976Tyr	p.D976Y	ENST00000368508	NM_002944.2	976	Gac/Tac																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739969	41739969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	67	389	0	ENST00000242208.4:c.4C>A	p.Pro2Thr	p.P2T	ENST00000242208	NM_002192.2	2	Ccc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	154	436	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	189	323	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	217	635	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	49	243	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	70	230	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
CIC	23152	MSKCC	GRCh37	19	42790944	42790944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	255	670	1	ENST00000575354.2:c.89G>A	p.Arg30His	p.R30H	ENST00000575354	NM_015125.3	30	cGc/cAc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323991	31323991	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1050692		P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	18	434	2	ENST00000412585.2:c.572G>C	p.Trp191Ser	p.W191S	ENST00000412585	NM_005514.6	191	tGg/tCg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324049	31324049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	18	543	0	ENST00000412585.2:c.514G>A	p.Glu172Lys	p.E172K	ENST00000412585	NM_005514.6	172	Gag/Aag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729841	41729841	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	95	417	0	ENST00000242208.4:c.688T>A	p.Leu230Met	p.L230M	ENST00000242208	NM_002192.2	230	Ttg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	406	660	0	ENST00000269305.4:c.469G>C	p.Val157Leu	p.V157L	ENST00000269305	NM_001126112.2	157	Gtc/Ctc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30133059	30133059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	189	281	0	ENST00000331968.5:c.542G>T	p.Gly181Val	p.G181V	ENST00000331968	NM_002742.2	181	gGt/gTt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130228	2130228	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	310	667	0	ENST00000219476.3:c.3460A>T	p.Thr1154Ser	p.T1154S	ENST00000219476	NM_000548.3	1154	Act/Tct																																																																														
VHL	7428	MSKCC	GRCh37	3	10188194	10188196	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	ATA	ATA	TT			P-0038989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	230	360	1	ENST00000256474.2:c.341-4_341-2delinsTT		p.X114_splice	ENST00000256474	NM_000551.3	114																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52623107	52623107	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	254	372	0	ENST00000394830.3:c.2944del	p.Arg982AspfsTer26	p.R982Dfs*26	ENST00000394830	NM_018313.4	982	Aga/ga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246378	53246379	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AA			P-0038989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	312	292	2	ENST00000375401.3:c.603_604delinsTT	p.Gln202Ter	p.Q202*	ENST00000375401	NM_004187.3	201	gtGCag/gtTTag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0038990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	406	722	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112162803	112162803	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0038990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	156	285	1	ENST00000257430.4:c.1409-2A>G		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	88	523	1	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478916	56478916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	375	783	0	ENST00000267101.3:c.372C>A	p.Asn124Lys	p.N124K	ENST00000267101	NM_001982.3	124	aaC/aaA																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593388	48593388	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0038990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	123	275	0	ENST00000342988.3:c.1140-1G>T		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25467161	25467161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	80	574	1	ENST00000264709.3:c.1714G>T	p.Ala572Ser	p.A572S	ENST00000264709	NM_175629.2	572	Gcc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	66	329	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	321	754	1	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81528563	81528563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0038991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	82	221	0	ENST00000298171.2:c.242T>C	p.Ile81Thr	p.I81T	ENST00000298171	NM_000369.2	81	aTc/aCc																																																																														
NF1	4763	MSKCC	GRCh37	17	29553475	29553475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	294	585	0	ENST00000358273.4:c.2024G>T	p.Gly675Val	p.G675V	ENST00000358273	NM_001042492.2	675	gGa/gTa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264332	46264332	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	72	393	0	ENST00000371998.3:c.1379G>C	p.Gly460Ala	p.G460A	ENST00000371998		460	gGg/gCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	70	354	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948644	71948644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	59	791	2	ENST00000298229.2:c.3356G>A	p.Arg1119Gln	p.R1119Q	ENST00000298229	NM_001567.3	1119	cGg/cAg																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644588	21644588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	69	439	0	ENST00000421138.2:c.79G>C	p.Glu27Gln	p.E27Q	ENST00000421138		27	Gaa/Caa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41258501	41258501	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	34	448	0	ENST00000357654.3:c.184C>G	p.Pro62Ala	p.P62A	ENST00000357654	NM_007294.3	62	Cct/Gct																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260214	19260214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	110	731	0	ENST00000162023.5:c.79G>A	p.Gly27Arg	p.G27R	ENST00000162023		27	Ggg/Agg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436395	52436395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	87	638	0	ENST00000460680.1:c.2099G>A	p.Arg700Gln	p.R700Q	ENST00000460680	NM_004656.3	700	cGg/cAg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502659	149502659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	60	558	1	ENST00000261799.4:c.2129C>A	p.Pro710Gln	p.P710Q	ENST00000261799	NM_002609.3	710	cCg/cAg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679225	30679225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	59	606	0	ENST00000376406.3:c.2185G>C	p.Glu729Gln	p.E729Q	ENST00000376406	NM_014641.2	729	Gag/Cag																																																																														
HGF	3082	MSKCC	GRCh37	7	81335696	81335696	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	52	380	0	ENST00000222390.5:c.1664G>C	p.Gly555Ala	p.G555A	ENST00000222390	NM_000601.4	555	gGa/gCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151960181	151960181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	22	270	0	ENST00000262189.6:c.1219G>A	p.Asp407Asn	p.D407N	ENST00000262189	NM_170606.2	407	Gat/Aat																																																																														
MED12	9968	MSKCC	GRCh37	X	70347962	70347962	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	60	557	0	ENST00000374080.3:c.3201T>G	p.Asp1067Glu	p.D1067E	ENST00000374080		1067	gaT/gaG																																																																														
BTK	695	MSKCC	GRCh37	X	100611806	100611806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	37	512	0	ENST00000308731.7:c.1315G>C	p.Glu439Gln	p.E439Q	ENST00000308731	NM_000061.2	439	Gaa/Caa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	99	677	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	89	612	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
POLE	5426	MSKCC	GRCh37	12	133257828	133257828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	50	528	2	ENST00000320574.5:c.100C>T	p.Arg34Cys	p.R34C	ENST00000320574	NM_006231.2	34	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	70	504	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22160227	22160227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	34	348	0	ENST00000215832.6:c.404G>A	p.Arg135Lys	p.R135K	ENST00000215832	NM_002745.4	135	aGa/aAa																																																																														
RB1	5925	MSKCC	GRCh37	13	48916747	48916747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	42	430	0	ENST00000267163.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000267163	NM_000321.2	93	Caa/Taa																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27840041	27840041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	45	380	0	ENST00000328488.2:c.53G>A	p.Arg18His	p.R18H	ENST00000328488	NM_003533.2	18	cGc/cAc																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790830	89790830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	81	764	0	ENST00000336032.3:c.217C>G	p.Arg73Gly	p.R73G	ENST00000336032	NM_006813.2	73	Cgc/Ggc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539071	187539071	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	56	573	0	ENST00000441802.2:c.8669C>G	p.Ser2890Ter	p.S2890*	ENST00000441802	NM_005245.3	2890	tCa/tGa																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665015	138665015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	20	142	0	ENST00000330315.3:c.550G>A	p.Asp184Asn	p.D184N	ENST00000330315	NM_023067.3	184	Gac/Aac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575071	48575071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	34	412	0	ENST00000342988.3:c.265G>C	p.Gly89Arg	p.G89R	ENST00000342988	NM_005359.5	89	Gga/Cga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38982109	38982109	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	43	441	0	ENST00000357387.3:c.613C>T	p.Arg205Ter	p.R205*	ENST00000357387	NM_152756.3	205	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444286	49444286	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	101	1066	0	ENST00000301067.7:c.3085C>T	p.Gln1029Ter	p.Q1029*	ENST00000301067	NM_003482.3	1029	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	47	402	0				ENST00000310581	NM_198253.2																																																																																
IFNGR1	3459	MSKCC	GRCh37	6	137519709	137519709	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	29	364	0	ENST00000367739.4:c.929C>G	p.Ser310Ter	p.S310*	ENST00000367739	NM_000416.2	310	tCa/tGa																																																																														
MGA	23269	MSKCC	GRCh37	15	42028498	42028498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	93	499	0	ENST00000219905.7:c.4036G>A	p.Glu1346Lys	p.E1346K	ENST00000219905	NM_001164273.1	1346	Gaa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11319364	11319364	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	54	626	0	ENST00000361445.4:c.103G>C	p.Glu35Gln	p.E35Q	ENST00000361445	NM_004958.3	35	Gaa/Caa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16265231	16265231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	39	473	0	ENST00000375759.3:c.10723C>G	p.Leu3575Val	p.L3575V	ENST00000375759	NM_015001.2	3575	Ctg/Gtg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481411	56481411	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	63	717	0	ENST00000267101.3:c.598G>C	p.Glu200Gln	p.E200Q	ENST00000267101	NM_001982.3	200	Gaa/Caa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112884087	112884087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	51	553	0	ENST00000351677.2:c.22C>A	p.His8Asn	p.H8N	ENST00000351677	NM_002834.3	8	Cac/Aac																																																																														
POLE	5426	MSKCC	GRCh37	12	133220511	133220511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	55	674	0	ENST00000320574.5:c.4202C>T	p.Ser1401Leu	p.S1401L	ENST00000320574	NM_006231.2	1401	tCa/tTa																																																																														
B2M	567	MSKCC	GRCh37	15	45007798	45007801	+	frameshift_variant	Frame_Shift_Del	DEL	TCTA	TCTA	-			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	65	407	1	ENST00000558401.1:c.248_251delATCT	p.Tyr83SerfsTer19	p.Y83Sfs*19	ENST00000558401	NM_004048.2	82	tTCTAt/tt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900469	3900469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	85	913	0	ENST00000262367.5:c.627G>A	p.Met209Ile	p.M209I	ENST00000262367	NM_004380.2	209	atG/atA																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14031643	14031643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	56	464	0	ENST00000311895.7:c.1832G>A	p.Gly611Glu	p.G611E	ENST00000311895	NM_005236.2	611	gGa/gAa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14038581	14038581	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	35	407	0	ENST00000311895.7:c.1906G>C	p.Glu636Gln	p.E636Q	ENST00000311895	NM_005236.2	636	Gaa/Caa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645450	67645450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	31	451	0	ENST00000264010.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000264010	NM_006565.3	239	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16046940	16046940	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	33	426	0	ENST00000268712.3:c.1153G>C	p.Asp385His	p.D385H	ENST00000268712	NM_006311.3	385	Gat/Cat																																																																														
NF1	4763	MSKCC	GRCh37	17	29559770	29559770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	21	317	0	ENST00000358273.4:c.3367G>C	p.Glu1123Gln	p.E1123Q	ENST00000358273	NM_001042492.2	1123	Gaa/Caa																																																																														
YES1	7525	MSKCC	GRCh37	18	743416	743416	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	37	353	0	ENST00000314574.4:c.725-1G>A		p.X242_splice	ENST00000314574	NM_005433.3	242																																																																															
INSR	3643	MSKCC	GRCh37	19	7122754	7122754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	63	770	0	ENST00000302850.5:c.3400C>G	p.Gln1134Glu	p.Q1134E	ENST00000302850	NM_000208.2	1134	Caa/Gaa																																																																														
ALK	238	MSKCC	GRCh37	2	29450515	29450515	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	77	817	0	ENST00000389048.3:c.2839G>C	p.Asp947His	p.D947H	ENST00000389048	NM_004304.4	947	Gac/Cac																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026084	48026084	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	38	480	0	ENST00000234420.5:c.962C>A	p.Ser321Ter	p.S321*	ENST00000234420	NM_000179.2	321	tCa/tAa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44515806	44515806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	62	520	0	ENST00000291552.4:c.247G>C	p.Glu83Gln	p.E83Q	ENST00000291552	NM_006758.2	83	Gag/Cag																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182631	38182631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	24	348	0	ENST00000396334.3:c.784C>T	p.Gln262Ter	p.Q262*	ENST00000396334	NM_002468.4	262	Cag/Tag																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474767	138474767	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	99	590	0	ENST00000289153.2:c.226G>C	p.Asp76His	p.D76H	ENST00000289153	NM_006219.2	76	Gac/Cac																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170009705	170009705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	75	363	0	ENST00000295797.4:c.1267G>A	p.Glu423Lys	p.E423K	ENST00000295797	NM_002740.5	423	Gaa/Aaa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1952827	1952827	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201252361		P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	49	619	1	ENST00000382891.5:c.1910C>T	p.Ser637Leu	p.S637L	ENST00000382891	NM_133335.3	637	tCg/tTg																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519266	137519266	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	38	493	0	ENST00000367739.4:c.1372G>C	p.Asp458His	p.D458H	ENST00000367739	NM_000416.2	458	Gat/Cat																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519428	137519428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	41	299	0	ENST00000367739.4:c.1210G>A	p.Glu404Lys	p.E404K	ENST00000367739	NM_000416.2	404	Gag/Aag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004455	150004455	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	42	612	0	ENST00000253339.5:c.1770A>T	p.Glu590Asp	p.E590D	ENST00000253339		590	gaA/gaT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2952931	2952931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	62	681	0	ENST00000396946.4:c.3009C>G	p.Ile1003Met	p.I1003M	ENST00000396946	NM_032415.4	1003	atC/atG																																																																														
HGF	3082	MSKCC	GRCh37	7	81374434	81374434	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	27	394	0	ENST00000222390.5:c.628G>C	p.Glu210Gln	p.E210Q	ENST00000222390	NM_000601.4	210	Gaa/Caa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509444	106509444	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	74	669	0	ENST00000359195.3:c.1438T>A	p.Tyr480Asn	p.Y480N	ENST00000359195	NM_002649.2	480	Tac/Aac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341979	8341980	+	splice_acceptor_variant	Splice_Site	DNP	CT	CT	AA			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	26	351	1	ENST00000356435.5:c.4662-2_4662-1delinsTT		p.X1554_splice	ENST00000356435		1554																																																																															
RAC1	5879	MSKCC	GRCh37	7	6441562	6441562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	16	154	0	ENST00000356142.4:c.409G>C	p.Asp137His	p.D137H	ENST00000356142	NM_018890.3	137	Gat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	137	557	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	142	555	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240765	53240765	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	132	365	0	ENST00000375401.3:c.1315G>C	p.Glu439Gln	p.E439Q	ENST00000375401	NM_004187.3	439	Gag/Cag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256061	16256061	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	39	525	0	ENST00000375759.3:c.3326C>G	p.Ser1109Ter	p.S1109*	ENST00000375759	NM_015001.2	1109	tCa/tGa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260843	16260843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	123	541	0	ENST00000375759.3:c.8108C>A	p.Pro2703Gln	p.P2703Q	ENST00000375759	NM_015001.2	2703	cCa/cAa																																																																														
PGR	5241	MSKCC	GRCh37	11	100912815	100912815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	78	362	0	ENST00000325455.5:c.2507G>T	p.Arg836Leu	p.R836L	ENST00000325455	NM_001202474.3	836	cGa/cTa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416641	121416641	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	177	683	0	ENST00000257555.6:c.70G>C	p.Glu24Gln	p.E24Q	ENST00000257555		24	Gag/Cag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121416769	121416769	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	217	874	0	ENST00000257555.6:c.198G>C	p.Glu66Asp	p.E66D	ENST00000257555		66	gaG/gaC																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528205	103528205	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	93	365	0	ENST00000355739.4:c.3513G>C	p.Lys1171Asn	p.K1171N	ENST00000355739	NM_000123.3	1171	aaG/aaC																																																																														
NF1	4763	MSKCC	GRCh37	17	29654731	29654731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	22	322	0	ENST00000358273.4:c.5483G>A	p.Arg1828Gln	p.R1828Q	ENST00000358273	NM_001042492.2	1828	cGg/cAg																																																																														
STK11	6794	MSKCC	GRCh37	19	1207134	1207134	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	188	809	0	ENST00000326873.7:c.222G>C	p.Arg74Ser	p.R74S	ENST00000326873	NM_000455.4	74	agG/agC																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15280929	15280930	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	125	719	0	ENST00000263388.2:c.5166_5167delinsTT	p.Met1722_Asp1723delinsIleTyr	p.M1722_D1723delinsIY	ENST00000263388	NM_000435.2	1722	atGGac/atTTac																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31372652	31372652	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	123	523	0	ENST00000328111.2:c.293C>G	p.Ser98Ter	p.S98*	ENST00000328111	NM_006892.3	98	tCa/tGa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931445	131931445	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	97	356	0	ENST00000265335.6:c.2150C>G	p.Ser717Ter	p.S717*	ENST00000265335		717	tCa/tGa																																																																														
HGF	3082	MSKCC	GRCh37	7	81339469	81339469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	22	320	0	ENST00000222390.5:c.1535G>C	p.Arg512Thr	p.R512T	ENST00000222390	NM_000601.4	512	aGa/aCa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513354	106513354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	67	307	0	ENST00000359195.3:c.2258C>G	p.Ser753Cys	p.S753C	ENST00000359195	NM_002649.2	753	tCt/tGt																																																																														
NBN	4683	MSKCC	GRCh37	8	90965564	90965564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	66	316	0	ENST00000265433.3:c.1753G>A	p.Glu585Lys	p.E585K	ENST00000265433	NM_002485.4	585	Gaa/Aaa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907037	101907037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	44	261	0	ENST00000374994.4:c.997G>C	p.Asp333His	p.D333H	ENST00000374994	NM_004612.2	333	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	603	402	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	117	307	0	ENST00000289153.2:c.3199G>T	p.Asp1067Tyr	p.D1067Y	ENST00000289153	NM_006219.2	1067	Gac/Tac																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873760	35873760	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	243	278	0	ENST00000216797.5:c.91G>C	p.Asp31His	p.D31H	ENST00000216797	NM_020529.2	31	Gac/Cac																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554368	81554368	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	67	232	0	ENST00000298171.2:c.388T>G	p.Phe130Val	p.F130V	ENST00000298171	NM_000369.2	130	Ttc/Gtc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923416	9923468	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTTAGGATTCTGGACAGGCACGGAGTTATTGAACACCAGGCCCCAAAGAAG	CCTTTAGGATTCTGGACAGGCACGGAGTTATTGAACACCAGGCCCCAAAGAAG	-			P-0038996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	108	378	0	ENST00000330684.3:c.1819_1871del	p.Leu607AspfsTer20	p.L607Dfs*20	ENST00000330684	NM_001134407.1	607	CTTCTTTGGGGCCTGGTGTTCAATAACTCCGTGCCTGTCCAGAATCCTAAAGGg/g																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228128	36228128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	295	453	0	ENST00000222270.7:c.7514A>G	p.Asn2505Ser	p.N2505S	ENST00000222270	NM_014727.1	2505	aAt/aGt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374308	138374308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	121	336	0	ENST00000289153.2:c.3136G>A	p.Asp1046Asn	p.D1046N	ENST00000289153	NM_006219.2	1046	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557913	187557914	+	missense_variant	Missense_Mutation	DNP	GG	GG	TC			P-0038996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	162	229	0	ENST00000441802.2:c.3797_3798delinsGA	p.Ala1266Gly	p.A1266G	ENST00000441802	NM_005245.3	1266	gCC/gGA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950802	38950817	+	frameshift_variant	Frame_Shift_Del	DEL	CATCCTCCAATATGAA	CATCCTCCAATATGAA	-			P-0038996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	20	109	0	ENST00000357387.3:c.3133_3148del	p.Phe1045ThrfsTer30	p.F1045Tfs*30	ENST00000357387	NM_152756.3	1045	TTCATATTGGAGGATGac/ac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608454	28608454	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AA			P-0038996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	53	293	0	ENST00000241453.7:c.1688delinsTT	p.Cys563PhefsTer9	p.C563Ffs*9	ENST00000241453	NM_004119.2	563	tGt/tTTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	522	582	3	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662412	227662412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	369	623	0	ENST00000305123.5:c.1043G>A	p.Ser348Asn	p.S348N	ENST00000305123	NM_005544.2	348	aGt/aAt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433495	138433495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	98	417	0	ENST00000289153.2:c.1117G>T	p.Val373Leu	p.V373L	ENST00000289153	NM_006219.2	373	Gta/Tta																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860670	151860670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	177	508	0	ENST00000262189.6:c.9992G>C	p.Ser3331Thr	p.S3331T	ENST00000262189	NM_170606.2	3331	aGt/aCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	236	570	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858477	57858477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0039070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	156	495	0	ENST00000228682.2:c.215G>A	p.Arg72Gln	p.R72Q	ENST00000228682	NM_005269.2	72	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435417	49435475	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCCAGCCCAGCCCCACTCACCTTCTGCACCTTGTTGATGCGGTGAGCTGCCCGGTTAT	CCCCAGCCCAGCCCCACTCACCTTCTGCACCTTGTTGATGCGGTGAGCTGCCCGGTTAT	-			P-0039070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	80	541	0	ENST00000301067.7:c.6197_6234+21del		p.X2066_splice	ENST00000301067	NM_003482.3	2066																																																																															
KIT	3815	MSKCC	GRCh37	4	55598101	55598101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0039070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	258	388	0	ENST00000288135.5:c.2298A>T	p.Leu766Phe	p.L766F	ENST00000288135	NM_000222.2	766	ttA/ttT																																																																														
HRAS	3265	MSKCC	GRCh37	11	533812	533812	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0039071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	91	758	0	ENST00000311189.7:c.244T>G	p.Phe82Val	p.F82V	ENST00000311189		82	Ttt/Gtt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061140	38061146	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCTT	CCCGCTT	-			P-0039071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	32	326	0	ENST00000250448.2:c.843_849del	p.Ser282AlafsTer37	p.S282Afs*37	ENST00000250448	NM_004496.3	281	ggAAGCGGG/gg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296400	15296400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0039071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	72	960	2	ENST00000263388.2:c.2042G>A	p.Cys681Tyr	p.C681Y	ENST00000263388	NM_000435.2	681	tGc/tAc																																																																														
ALK	238	MSKCC	GRCh37	2	29754809	29754830	+	frameshift_variant	Frame_Shift_Del	DEL	GGATCTCTCTTGCAGCCTCGTT	GGATCTCTCTTGCAGCCTCGTT	-			P-0039071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	27	441	0	ENST00000389048.3:c.1105_1126del	p.Asn369SerfsTer2	p.N369Sfs*2	ENST00000389048	NM_004304.4	369	AACGAGGCTGCAAGAGAGATCCtc/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0039076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	55	724	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	25	403	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	33	623	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	55	746	0	ENST00000326873.7:c.727del	p.Val243SerfsTer44	p.V243Sfs*44	ENST00000326873	NM_000455.4	242	Ggg/gg																																																																														
ATM	472	MSKCC	GRCh37	11	108196270	108196270	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	21	256	0	ENST00000278616.4:c.6806A>T	p.Gln2269Leu	p.Q2269L	ENST00000278616	NM_000051.3	2269	cAg/cTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145653	11145653	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	60	829	2	ENST00000344626.4:c.4015G>T	p.Glu1339Ter	p.E1339*	ENST00000344626	NM_003072.3	1339	Gag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576377	67576377	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	15	159	0	ENST00000274335.5:c.656A>G	p.Tyr219Cys	p.Y219C	ENST00000274335		219	tAt/tGt																																																																														
SMO	6608	MSKCC	GRCh37	7	128852201	128852201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0039077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	52	869	0	ENST00000249373.3:c.2273G>T	p.Trp758Leu	p.W758L	ENST00000249373	NM_005631.4	758	tGg/tTg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			705	187	684	0	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0020707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			124	257	437	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																														
ATM	472	MSKCC	GRCh37	11	108106537	108106537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			255	71	261	0	ENST00000278616.4:c.472G>A	p.Glu158Lys	p.E158K	ENST00000278616	NM_000051.3	158	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108114724	108114724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			254	86	314	0	ENST00000278616.4:c.541G>A	p.Asp181Asn	p.D181N	ENST00000278616	NM_000051.3	181	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108117816	108117816	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			289	80	290	0	ENST00000278616.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000278616	NM_000051.3	343	Gaa/Taa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641082	3641082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			788	165	822	0	ENST00000294008.3:c.2557G>A	p.Glu853Lys	p.E853K	ENST00000294008	NM_032444.2	853	Gaa/Aaa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641688	23641688	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187191947		P-0020707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			428	82	409	0	ENST00000261584.4:c.1787G>A	p.Gly596Glu	p.G596E	ENST00000261584	NM_024675.3	596	gGa/gAa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56864531	56864531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			243	120	467	0	ENST00000308159.5:c.1019G>A	p.Arg340Gln	p.R340Q	ENST00000308159	NM_014669.4	340	cGa/cAa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003236	143003236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	106	399	0	ENST00000262992.4:c.2590G>A	p.Glu864Lys	p.E864K	ENST00000262992	NM_001101669.1	864	Gag/Aag																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031982	26031982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020707-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			386	80	391	0	ENST00000244661.2:c.307G>C	p.Gly103Arg	p.G103R	ENST00000244661	NM_003537.3	103	Ggg/Cgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	385	359	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	251	647	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	296	489	0	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt																																																																														
VHL	7428	MSKCC	GRCh37	3	10183766	10183766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			698	40	641	0	ENST00000256474.2:c.235C>G	p.Arg79Gly	p.R79G	ENST00000256474	NM_000551.3	79	Cgc/Ggc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123171462	123171462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	150	367	0	ENST00000218089.9:c.374C>T	p.Ser125Leu	p.S125L	ENST00000218089	NM_001042749.1	125	tCa/tTa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	56	284	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																														
ATM	472	MSKCC	GRCh37	11	108190685	108190685	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	70	313	0	ENST00000278616.4:c.6352G>C	p.Glu2118Gln	p.E2118Q	ENST00000278616	NM_000051.3	2118	Gaa/Caa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348758	118348758	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	167	274	0	ENST00000534358.1:c.3411A>T	p.Arg1137Ser	p.R1137S	ENST00000534358	NM_005933.3	1137	agA/agT																																																																														
POLE	5426	MSKCC	GRCh37	12	133253966	133253966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			717	62	517	0	ENST00000320574.5:c.784G>A	p.Asp262Asn	p.D262N	ENST00000320574	NM_006231.2	262	Gac/Aac																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554403	63554403	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			879	173	613	0	ENST00000307078.5:c.336T>A	p.Phe112Leu	p.F112L	ENST00000307078	NM_004655.3	112	ttT/ttA																																																																														
ALK	238	MSKCC	GRCh37	2	30142933	30142933	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	247	814	1	ENST00000389048.3:c.593T>A	p.Val198Glu	p.V198E	ENST00000389048	NM_004304.4	198	gTg/gAg																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309458	30309458	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			860	176	515	0	ENST00000307677.4:c.564G>T	p.Trp188Cys	p.W188C	ENST00000307677	NM_138578.1	188	tgG/tgT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022666	31022666	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	96	573	0	ENST00000375687.4:c.2151G>C	p.Arg717Ser	p.R717S	ENST00000375687	NM_015338.5	717	agG/agC																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306532	41306532	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	187	479	0	ENST00000373198.4:c.1127C>A	p.Pro376His	p.P376H	ENST00000373198	NM_133170.3	376	cCc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947866	178947866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	30	301	0	ENST00000263967.3:c.2741G>A	p.Gly914Glu	p.G914E	ENST00000263967	NM_006218.2	914	gGa/gAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176678829	176678832	+	frameshift_variant	Frame_Shift_Del	DEL	ATTT	ATTT	TGA			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	123	315	1	ENST00000439151.2:c.4740_4743delinsTGA	p.Lys1580AsnfsTer62	p.K1580Nfs*62	ENST00000439151	NM_022455.4	1580	aaATTT/aaTGA																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98212174	98212174	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	139	351	0	ENST00000331920.6:c.3498T>A	p.Asn1166Lys	p.N1166K	ENST00000331920	NM_000264.3	1166	aaT/aaA																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179102	123179102	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			757	86	510	0	ENST00000218089.9:c.552del	p.Gln185AsnfsTer12	p.Q185Nfs*12	ENST00000218089	NM_001042749.1	184	cGg/cg																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504033	123504033	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023614-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	82	293	2	ENST00000371139.4:c.209C>A	p.Pro70His	p.P70H	ENST00000371139	NM_001114937.2	70	cCt/cAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	750	543	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597378	10597378	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	45	702	1	ENST00000171111.5:c.1825A>T	p.Thr609Ser	p.T609S	ENST00000171111	NM_203500.1	609	Acc/Tcc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61708412	61708412	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	31	272	0	ENST00000401558.2:c.2977C>T	p.Gln993Ter	p.Q993*	ENST00000401558	NM_003400.3	993	Caa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212522506	212522506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	66	346	0	ENST00000342788.4:c.1919G>A	p.Gly640Asp	p.G640D	ENST00000342788	NM_005235.2	640	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	398	793	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	409	821	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748309	41748309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	214	844	0	ENST00000226382.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000226382	NM_003924.3	154	Cgc/Tgc																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	132	513	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468275	50468275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	285	638	0	ENST00000331340.3:c.1510G>A	p.Glu504Lys	p.E504K	ENST00000331340	NM_006060.4	504	Gag/Aag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	374	821	0	ENST00000292408.4:c.1648G>A	p.Val550Met	p.V550M	ENST00000292408	NM_213647.1	550	Gtg/Atg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888166	112888166	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	215	623	0	ENST00000351677.2:c.182A>T	p.Asp61Val	p.D61V	ENST00000351677	NM_002834.3	61	gAt/gTt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523142	176523142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	339	787	0	ENST00000292408.4:c.1906G>A	p.Gly636Ser	p.G636S	ENST00000292408	NM_213647.1	636	Ggc/Agc																																																																														
POLE	5426	MSKCC	GRCh37	12	133252745	133252745	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116162724		P-0037865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	83	516	0	ENST00000320574.5:c.955G>A	p.Asp319Asn	p.D319N	ENST00000320574	NM_006231.2	319	Gat/Aat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	148	497	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372025	55372025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	111	460	1	ENST00000297316.4:c.715G>A	p.Ala239Thr	p.A239T	ENST00000297316	NM_022454.3	239	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	146	786	0	ENST00000269305.4:c.823T>G	p.Cys275Gly	p.C275G	ENST00000269305	NM_001126112.2	275	Tgt/Ggt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430231	181430231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	161	465	3	ENST00000325404.1:c.83C>T	p.Ala28Val	p.A28V	ENST00000325404	NM_003106.3	28	gCg/gTg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383356	42383356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	69	633	1	ENST00000221972.3:c.376C>T	p.Arg126Cys	p.R126C	ENST00000221972	NM_021601.3	126	Cgc/Tgc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849078	156849078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	136	1009	0	ENST00000524377.1:c.1970T>C	p.Leu657Pro	p.L657P	ENST00000524377	NM_002529.3	657	cTa/cCa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913123	32913123	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	29	632	0	ENST00000380152.3:c.4631A>C	p.Asn1544Thr	p.N1544T	ENST00000380152		1544	aAc/aCc																																																																														
NF1	4763	MSKCC	GRCh37	17	29685569	29685569	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	33	602	0	ENST00000358273.4:c.8042T>C	p.Ile2681Thr	p.I2681T	ENST00000358273	NM_001042492.2	2681	aTc/aCc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11019804	11019804	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	138	598	0	ENST00000327064.4:c.479A>G	p.Gln160Arg	p.Q160R	ENST00000327064	NM_199141.1	160	cAg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	197	306	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	489	589	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045024	47045024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	180	293	0	ENST00000329236.7:c.2116C>T	p.His706Tyr	p.H706Y	ENST00000329236	NM_001204466.1	706	Cac/Tac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27098999	27098999	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	139	409	0	ENST00000324856.7:c.3415G>T	p.Gly1139Ter	p.G1139*	ENST00000324856	NM_006015.4	1139	Gga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246387	46246387	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	198	280	0	ENST00000334344.6:c.4483del	p.His1495IlefsTer21	p.H1495Ifs*21	ENST00000334344	NM_152641.2	1494	tCc/tc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610560	81610560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	218	313	0	ENST00000298171.2:c.2158C>A	p.Gln720Lys	p.Q720K	ENST00000298171	NM_000369.2	720	Cag/Aag																																																																														
ERG	2078	MSKCC	GRCh37	21	39817493	39817493	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	144	457	0	ENST00000288319.7:c.70G>T	p.Gly24Ter	p.G24*	ENST00000288319	NM_182918.3	24	Gga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142177816	142177816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	155	227	0	ENST00000350721.4:c.7487A>G	p.Asn2496Ser	p.N2496S	ENST00000350721	NM_001184.3	2496	aAt/aGt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6036983	6036983	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	279	416	0	ENST00000265849.7:c.777T>A	p.Cys259Ter	p.C259*	ENST00000265849	NM_000535.5	259	tgT/tgA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508617	106508617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	236	373	0	ENST00000359195.3:c.611C>G	p.Ser204Cys	p.S204C	ENST00000359195	NM_002649.2	204	tCc/tGc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340351	8340351	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	248	361	0	ENST00000356435.5:c.5245A>C	p.Met1749Leu	p.M1749L	ENST00000356435		1749	Atg/Ctg																																																																														
ABL1	25	MSKCC	GRCh37	9	133738186	133738186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	252	364	0	ENST00000318560.5:c.586G>T	p.Ala196Ser	p.A196S	ENST00000318560	NM_005157.4	196	Gcc/Tcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	151	277	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273944	10273944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	222	701	2	ENST00000330684.3:c.325G>A	p.Val109Ile	p.V109I	ENST00000330684	NM_001134407.1	109	Gta/Ata																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412698	63412698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	149	550	0	ENST00000330258.3:c.469G>C	p.Glu157Gln	p.E157Q	ENST00000330258	NM_152424.3	157	Gag/Cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087952	27087958	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCAAG	GCCCAAG	-			P-0038791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	421	404	1	ENST00000324856.7:c.2239_2245del	p.Ala747IlefsTer84	p.A747Ifs*84	ENST00000324856	NM_006015.4	747	GCCCAAGat/at																																																																														
CCND2	894	MSKCC	GRCh37	12	4383285	4383285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	127	410	0	ENST00000261254.3:c.79C>A	p.Leu27Met	p.L27M	ENST00000261254	NM_001759.3	27	Ctg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	91	327	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	72	445	0	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	72	445	0	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577504	7577524	+	inframe_deletion	In_Frame_Del	DEL	GTCTTCCAGTGTGATGATGGT	GTCTTCCAGTGTGATGATGGT	-			P-0038795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	114	561	0	ENST00000269305.4:c.757_777del	p.Thr253_Asp259del	p.T253_D259del	ENST00000269305	NM_001126112.2	253	ACCATCATCACACTGGAAGAC/-																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435739	56435740	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0038795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	90	464	0	ENST00000407977.2:c.1397_1398del	p.Ser466Ter	p.S466*	ENST00000407977		466	tCC/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	21	329	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	17	511	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	166	70	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624242	89624272	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGAGATCGTTAGCAGAAACAAAAGGAGAT	AAAGAGATCGTTAGCAGAAACAAAAGGAGAT	-			P-0038808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	23	21	0	ENST00000371953.3:c.17_47del	p.Lys6IlefsTer8	p.K6Ifs*8	ENST00000371953	NM_000314.4	6	AAAGAGATCGTTAGCAGAAACAAAAGGAGATat/at																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980744	40980744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199751250		P-0038808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	82	49	0	ENST00000373198.4:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000373198	NM_133170.3	581	cGg/cAg																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2491355	2491355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	97	853	0	ENST00000355716.4:c.398A>G	p.Asp133Gly	p.D133G	ENST00000355716	NM_003820.2	133	gAc/gGc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11199670	11199670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	111	558	1	ENST00000361445.4:c.4918C>T	p.Arg1640Trp	p.R1640W	ENST00000361445	NM_004958.3	1640	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254717	16254717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	84	624	0	ENST00000375759.3:c.1982G>T	p.Trp661Leu	p.W661L	ENST00000375759	NM_015001.2	661	tGg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	24	84	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087372	27087373	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	86	550	0	ENST00000324856.7:c.1950dup	p.Met651HisfsTer25	p.M651Hfs*25	ENST00000324856	NM_006015.4	649	ctc/ctCc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100862	27100862	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	89	527	0	ENST00000324856.7:c.4144A>G	p.Lys1382Glu	p.K1382E	ENST00000324856	NM_006015.4	1382	Aag/Gag																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46715736	46715736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	138	586	1	ENST00000371975.4:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000371975	NM_003579.3	52	cGg/cAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	54	379	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65321194	65321194	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	51	331	0	ENST00000342505.4:c.1646G>A	p.Arg549Gln	p.R549Q	ENST00000342505	NM_002227.2	549	cGa/cAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	32	359	1	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
NRAS	4893	MSKCC	GRCh37	1	115251216	115251216	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	68	500	0	ENST00000369535.4:c.510del	p.Lys170AsnfsTer19	p.K170Nfs*19	ENST00000369535	NM_002524.4	170	aaA/aa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120491682	120491683	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	55	339	0	ENST00000256646.2:c.2546_2547del	p.Lys849ArgfsTer6	p.K849Rfs*6	ENST00000256646	NM_024408.3	849	aAA/a																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551757	150551757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	46	157	0	ENST00000369026.2:c.250G>A	p.Ala84Thr	p.A84T	ENST00000369026	NM_021960.4	84	Gcc/Acc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206648211	206648211	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202128741		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	47	383	0	ENST00000367120.3:c.232G>A	p.Gly78Arg	p.G78R	ENST00000367120	NM_014002.3	78	Gga/Aga																																																																														
TET1	80312	MSKCC	GRCh37	10	70333597	70333597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	61	471	0	ENST00000373644.4:c.1502A>G	p.Lys501Arg	p.K501R	ENST00000373644	NM_030625.2	501	aAg/aGg																																																																														
TET1	80312	MSKCC	GRCh37	10	70446447	70446447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	85	436	0	ENST00000373644.4:c.5387C>T	p.Ser1796Leu	p.S1796L	ENST00000373644	NM_030625.2	1796	tCg/tTg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88672029	88672029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	107	421	1	ENST00000372037.3:c.563G>A	p.Arg188His	p.R188H	ENST00000372037	NM_004329.2	188	cGt/cAt																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741343	17741343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	75	656	2	ENST00000250003.3:c.14C>T	p.Ser5Leu	p.S5L	ENST00000250003	NM_002478.4	5	tCg/tTg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741526	17741526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	67	513	1	ENST00000250003.3:c.197C>A	p.Pro66His	p.P66H	ENST00000250003	NM_002478.4	66	cCc/cAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138840	64138840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	117	643	1	ENST00000334205.4:c.2207G>A	p.Arg736Gln	p.R736Q	ENST00000334205	NM_003942.2	736	cGg/cAg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	105	749	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201947	67201947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	168	669	1	ENST00000312629.5:c.1147G>A	p.Ala383Thr	p.A383T	ENST00000312629	NM_003952.2	383	Gcc/Acc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94201032	94201032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	27	346	0	ENST00000323929.3:c.1045C>T	p.Arg349Trp	p.R349W	ENST00000323929	NM_005591.3	349	Cgg/Tgg																																																																														
SESN3	143686	MSKCC	GRCh37	11	94963966	94963966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	56	297	0	ENST00000536441.1:c.59G>A	p.Cys20Tyr	p.C20Y	ENST00000536441	NM_144665.3	20	tGc/tAc																																																																														
PGR	5241	MSKCC	GRCh37	11	100920786	100920786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	30	308	2	ENST00000325455.5:c.2362C>T	p.Arg788Trp	p.R788W	ENST00000325455	NM_001202474.3	788	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108142096	108142096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	55	513	0	ENST00000278616.4:c.3040G>A	p.Ala1014Thr	p.A1014T	ENST00000278616	NM_000051.3	1014	Gct/Act																																																																														
ATM	472	MSKCC	GRCh37	11	108168020	108168020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	45	286	0	ENST00000278616.4:c.4916C>T	p.Pro1639Leu	p.P1639L	ENST00000278616	NM_000051.3	1639	cCg/cTg																																																																														
ATM	472	MSKCC	GRCh37	11	108173696	108173696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	28	410	0	ENST00000278616.4:c.5441del	p.Leu1814TrpfsTer14	p.L1814Wfs*14	ENST00000278616	NM_000051.3	1812	gcT/gc																																																																														
CCND2	894	MSKCC	GRCh37	12	4409089	4409089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	59	412	0	ENST00000261254.3:c.784C>A	p.Arg262Ser	p.R262S	ENST00000261254	NM_001759.3	262	Cgt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	95	372	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426990	49426990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	83	639	0	ENST00000301067.7:c.11498G>A	p.Arg3833Gln	p.R3833Q	ENST00000301067	NM_003482.3	3833	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	93	837	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446488	49446488	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	85	440	0	ENST00000301067.7:c.1117del	p.Ser373HisfsTer29	p.S373Hfs*29	ENST00000301067	NM_003482.3	373	Tca/ca																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967543	26967543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	61	348	0	ENST00000381527.3:c.686C>T	p.Thr229Met	p.T229M	ENST00000381527	NM_001260.1	229	aCg/aTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877353	28877353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	154	453	0	ENST00000282397.4:c.3968C>T	p.Pro1323Leu	p.P1323L	ENST00000282397	NM_002019.4	1323	cCg/cTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	53	163	6	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987138	36987138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	73	690	1	ENST00000354822.5:c.551C>T	p.Ala184Val	p.A184V	ENST00000354822	NM_001079668.2	184	gCc/gTc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81534643	81534645	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	27	367	0	ENST00000298171.2:c.290_292del	p.Phe97del	p.F97del	ENST00000298171	NM_000369.2	96	tcCTTc/tcc																																																																														
MGA	23269	MSKCC	GRCh37	15	42000020	42000020	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	77	640	1	ENST00000219905.7:c.2287del	p.Trp763GlyfsTer54	p.W763Gfs*54	ENST00000219905	NM_001164273.1	761	ccT/cc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690584	88690584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	53	454	0	ENST00000360948.2:c.446C>T	p.Thr149Met	p.T149M	ENST00000360948	NM_001012338.2	149	aCg/aTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130288	2130288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	100	748	0	ENST00000219476.3:c.3520C>T	p.Arg1174Trp	p.R1174W	ENST00000219476	NM_000548.3	1174	Cgg/Tgg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2220703	2220703	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	70	448	0	ENST00000326181.6:c.320T>G	p.Phe107Cys	p.F107C	ENST00000326181	NM_032271.2	107	tTc/tGc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857680	9857680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	98	449	1	ENST00000330684.3:c.3721C>T	p.Arg1241Trp	p.R1241W	ENST00000330684	NM_001134407.1	1241	Cgg/Tgg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646308	23646308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	72	586	1	ENST00000261584.4:c.1559G>A	p.Cys520Tyr	p.C520Y	ENST00000261584	NM_024675.3	520	tGc/tAc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50810143	50810143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	53	535	0	ENST00000398568.2:c.967G>C	p.Val323Leu	p.V323L	ENST00000398568	NM_001042412.1	323	Gtt/Ctt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813627	50813627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	126	632	0	ENST00000398568.2:c.1181G>A	p.Arg394His	p.R394H	ENST00000398568	NM_001042412.1	394	cGt/cAt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56872937	56872937	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	53	327	0	ENST00000308159.5:c.2097delT	p.Phe699LeufsTer19	p.F699Lfs*19	ENST00000308159	NM_014669.4	698	Ttt/tt																																																																														
CDH1	999	MSKCC	GRCh37	16	68863643	68863643	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	90	655	0	ENST00000261769.5:c.2386del	p.Arg796GlyfsTer20	p.R796Gfs*20	ENST00000261769	NM_004360.3	794	gtC/gt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829463	72829471	+	inframe_deletion	In_Frame_Del	DEL	TCCATGGCA	TCCATGGCA	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	64	567	0	ENST00000268489.5:c.7110_7118del	p.Asp2370_Met2372del	p.D2370_M2372del	ENST00000268489	NM_006885.3	2370	gaTGCCATGGAa/gaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845896	72845896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	39	462	0	ENST00000268489.5:c.3571G>A	p.Ala1191Thr	p.A1191T	ENST00000268489	NM_006885.3	1191	Gca/Aca																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348658	89348658	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	174	827	0	ENST00000301030.4:c.4292del	p.Asn1431MetfsTer11	p.N1431Mfs*11	ENST00000301030	NM_001256183.1	1431	aAt/at																																																																														
NF1	4763	MSKCC	GRCh37	17	29562668	29562668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	55	495	1	ENST00000358273.4:c.3748C>T	p.Arg1250Trp	p.R1250W	ENST00000358273	NM_001042492.2	1250	Cgg/Tgg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30264325	30264326	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	18	70	0	ENST00000322652.5:c.65dup	p.Gly23ArgfsTer60	p.G23Rfs*60	ENST00000322652	NM_015355.2	20	-/G																																																																														
RARA	5914	MSKCC	GRCh37	17	38487554	38487554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	111	676	0	ENST00000254066.5:c.89delC	p.Pro30LeufsTer12	p.P30Lfs*12	ENST00000254066	NM_000964.3	28	ttC/tt																																																																														
RARA	5914	MSKCC	GRCh37	17	38512270	38512270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	169	756	0	ENST00000254066.5:c.1181G>A	p.Arg394Gln	p.R394Q	ENST00000254066	NM_000964.3	394	cGg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	139	738	3	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492694	56492694	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	118	456	0	ENST00000407977.2:c.245del	p.Leu82Ter	p.L82*	ENST00000407977		82	tTa/ta																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533938	63533939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	54	452	0	ENST00000307078.5:c.1214_1215dup	p.Gly406ArgfsTer53	p.G406Rfs*53	ENST00000307078	NM_004655.3	405	-/AG																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63537586	63537587	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	126	484	0	ENST00000307078.5:c.1045_1046del	p.Leu349ThrfsTer24	p.L349Tfs*24	ENST00000307078	NM_004655.3	349	CTa/a																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63553975	63553976	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	107	532	0	ENST00000307078.5:c.763_764del	p.Leu255GlufsTer13	p.L255Efs*13	ENST00000307078	NM_004655.3	255	CTg/g																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66518957	66518957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	64	455	0	ENST00000358598.2:c.238G>A	p.Asp80Asn	p.D80N	ENST00000358598	NM_212471.2	80	Gat/Aat																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191069	2191069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	89	593	0	ENST00000398665.3:c.323G>A	p.Arg108His	p.R108H	ENST00000398665	NM_032482.2	108	cGc/cAc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110242	3110242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	114	778	0	ENST00000078429.4:c.232C>T	p.Leu78Phe	p.L78F	ENST00000078429	NM_002067.2	78	Ctc/Ttc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210500	5210500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	60	610	0	ENST00000357368.4:c.5467T>C	p.Phe1823Leu	p.F1823L	ENST00000357368	NM_002850.3	1823	Ttc/Ctc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	147	626	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291083	10291084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755889652		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	81	752	1	ENST00000340748.4:c.387dup	p.Lys130GlnfsTer19	p.K130Qfs*19	ENST00000340748		129	-/C																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610610	10610610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	84	712	1	ENST00000171111.5:c.100G>A	p.Ala34Thr	p.A34T	ENST00000171111	NM_203500.1	34	Gcc/Acc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144149	11144149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	98	674	0	ENST00000344626.4:c.3730C>T	p.Arg1244Cys	p.R1244C	ENST00000344626	NM_003072.3	1244	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210689	36210689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	89	594	0	ENST00000222270.7:c.440G>A	p.Arg147Gln	p.R147Q	ENST00000222270	NM_014727.1	147	cGa/cAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	136	903	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918231	50918231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	96	661	0	ENST00000440232.2:c.2548C>T	p.Arg850Cys	p.R850C	ENST00000440232	NM_002691.3	850	Cgc/Tgc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	97	448	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170773	99170773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	65	458	0	ENST00000074304.5:c.1402G>A	p.Ala468Thr	p.A468T	ENST00000074304	NM_001134224.1	468	Gcc/Acc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046441	128046441	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	73	355	0	ENST00000285398.2:c.823-1G>A		p.X275_splice	ENST00000285398	NM_000122.1	275																																																																															
BARD1	580	MSKCC	GRCh37	2	215645975	215645975	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	50	475	0	ENST00000260947.4:c.623delA	p.Lys208ArgfsTer4	p.K208Rfs*4	ENST00000260947	NM_000465.2	208	aAg/ag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023445	31023445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	61	588	0	ENST00000375687.4:c.2930A>C	p.Gln977Pro	p.Q977P	ENST00000375687	NM_015338.5	977	cAg/cCg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730910	40730910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	115	578	1	ENST00000373198.4:c.3625C>T	p.Arg1209Trp	p.R1209W	ENST00000373198	NM_133170.3	1209	Cgg/Tgg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12647737	12647737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	49	355	2	ENST00000251849.4:c.643C>T	p.Arg215Cys	p.R215C	ENST00000251849	NM_002880.3	215	Cgt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468398	89468398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	36	254	0	ENST00000336596.2:c.1938delA	p.Glu647ArgfsTer9	p.E647Rfs*9	ENST00000336596	NM_005233.5	644	tcA/tc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	82	908	2	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																														
ATR	545	MSKCC	GRCh37	3	142172007	142172007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	55	541	0	ENST00000350721.4:c.7724C>T	p.Ala2575Val	p.A2575V	ENST00000350721	NM_001184.3	2575	gCg/gTg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	86	666	5	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803450	1803450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	146	696	0	ENST00000260795.2:c.719C>T	p.Thr240Met	p.T240M	ENST00000260795		240	aCg/aTg																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1920288	1920288	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	108	683	1	ENST00000382891.5:c.1348C>T	p.Arg450Ter	p.R450*	ENST00000382891	NM_133335.3	450	Cga/Tga																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1976593	1976593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	85	642	0	ENST00000382891.5:c.3376C>T	p.Arg1126Cys	p.R1126C	ENST00000382891	NM_133335.3	1126	Cgt/Tgt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201815	66201815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	92	425	0	ENST00000273854.3:c.2687G>A	p.Arg896His	p.R896H	ENST00000273854	NM_004439.5	896	cGt/cAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286238	66286238	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	35	339	0	ENST00000273854.3:c.1448del	p.Asn483ThrfsTer18	p.N483Tfs*18	ENST00000273854	NM_004439.5	483	aAc/ac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250856	153250858	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	49	343	0	ENST00000281708.4:c.1202_1204delACA	p.Asn401del	p.N401del	ENST00000281708	NM_033632.3	401	aACAct/act																																																																														
TERT	7015	MSKCC	GRCh37	5	1268636	1268636	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	94	684	0	ENST00000310581.5:c.2581G>A	p.Gly861Arg	p.G861R	ENST00000310581	NM_198253.2	861	Ggg/Agg																																																																														
TERT	7015	MSKCC	GRCh37	5	1279527	1279527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	202	880	0	ENST00000310581.5:c.2009C>T	p.Ala670Val	p.A670V	ENST00000310581	NM_198253.2	670	gCg/gTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38963112	38963112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	38	255	0	ENST00000357387.3:c.1432C>T	p.Arg478Cys	p.R478C	ENST00000357387	NM_152756.3	478	Cgc/Tgc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161690	56161690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	44	395	0	ENST00000399503.3:c.1187G>A	p.Arg396His	p.R396H	ENST00000399503	NM_005921.1	396	cGt/cAt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753011	57753012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	64	347	7	ENST00000274289.3:c.1004dupT	p.Leu335PhefsTer12	p.L335Ffs*12	ENST00000274289	NM_006622.3	335	ttg/ttTg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753950	57753950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	34	369	0	ENST00000274289.3:c.674G>A	p.Gly225Asp	p.G225D	ENST00000274289	NM_006622.3	225	gGt/gAt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	165	600	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564366	86564366	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	67	535	0	ENST00000274376.6:c.98T>C	p.Val33Ala	p.V33A	ENST00000274376	NM_002890.2	33	gTg/gCg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931451	131931452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	46	433	0	ENST00000265335.6:c.2164_2165dup	p.Glu723ArgfsTer14	p.E723Rfs*14	ENST00000265335		719	cta/ctAAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562442	176562442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	77	736	0	ENST00000439151.2:c.338G>A	p.Cys113Tyr	p.C113Y	ENST00000439151	NM_022455.4	113	tGc/tAc																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020979	26020979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	61	442	0	ENST00000357647.3:c.262T>C	p.Ser88Pro	p.S88P	ENST00000357647	NM_003529.2	88	Tcc/Ccc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672177	30672177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	114	776	0	ENST00000376406.3:c.4783C>T	p.Arg1595Trp	p.R1595W	ENST00000376406	NM_014641.2	1595	Cgg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178537	32178537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	48	547	0	ENST00000375023.3:c.2857C>A	p.Leu953Ile	p.L953I	ENST00000375023	NM_004557.3	953	Ctc/Atc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288240	33288240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	63	504	0	ENST00000374542.5:c.1168G>A	p.Glu390Lys	p.E390K	ENST00000374542	NM_001141970.1	390	Gag/Aag																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	84	586	1	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157488275	157488275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	62	395	3	ENST00000346085.5:c.2981C>T	p.Ala994Val	p.A994V	ENST00000346085	NM_020732.3	994	gCg/gTg																																																																														
PARK2	5071	MSKCC	GRCh37	6	161771166	161771166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	84	691	0	ENST00000366898.1:c.1363C>T	p.Arg455Cys	p.R455C	ENST00000366898	NM_004562.2	455	Cgc/Tgc																																																																														
PARK2	5071	MSKCC	GRCh37	6	162864403	162864403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148990138		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	87	461	1	ENST00000366898.1:c.110C>T	p.Pro37Leu	p.P37L	ENST00000366898	NM_004562.2	37	cCg/cTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958168	2958168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	78	767	1	ENST00000396946.4:c.2564G>A	p.Arg855Gln	p.R855Q	ENST00000396946	NM_032415.4	855	cGg/cAg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508673	106508673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	158	540	0	ENST00000359195.3:c.667G>A	p.Val223Ile	p.V223I	ENST00000359195	NM_002649.2	223	Gtc/Atc																																																																														
MET	4233	MSKCC	GRCh37	7	116411880	116411883	+	intron_variant	Intron	DEL	TCTT	TCTT	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	141	914	0	ENST00000397752.3:c.2888-16_2888-13delTTCT		p.*963*	ENST00000397752	NM_000245.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151843748	151843748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	58	399	1	ENST00000262189.6:c.13967C>T	p.Ala4656Val	p.A4656V	ENST00000262189	NM_170606.2	4656	gCg/gTg																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	66	326	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5022033	5022033	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	54	431	0	ENST00000381652.3:c.46A>G	p.Thr16Ala	p.T16A	ENST00000381652	NM_004972.3	16	Acc/Gcc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	130	614	3	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231105	98231105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	114	568	0	ENST00000331920.6:c.2178delC	p.Cys727ValfsTer19	p.C727Vfs*19	ENST00000331920	NM_000264.3	726	ccC/cc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760231	133760232	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	83	582	0	ENST00000318560.5:c.2559dup	p.Thr854HisfsTer30	p.T854Hfs*30	ENST00000318560	NM_005157.4	852	acc/aCcc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	83	769	3	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197044	123197044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	37	206	0	ENST00000218089.9:c.1810C>T	p.Arg604Ter	p.R604*	ENST00000218089	NM_001042749.1	604	Cga/Tga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803386	1803386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	90	768	0	ENST00000260795.2:c.655G>A	p.Val219Met	p.V219M	ENST00000260795		219	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0039141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	125	453	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0039141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	288	803	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068351	26068360	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGATTTCTTT	TGATTTCTTT	CTC			P-0039141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	56	429	2	ENST00000435504.4:c.130_139delinsGAG	p.Lys44GlufsTer11	p.K44Efs*11	ENST00000435504		44	AAAGAAATCAga/GAGga																																																																														
APC	324	MSKCC	GRCh37	5	112116526	112116527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGA			P-0039141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	90	434	0	ENST00000257430.4:c.573_576dup	p.Ala193Ter	p.A193*	ENST00000257430	NM_000038.5	191	tat/tATGAat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577571	7577571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037734-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			316	201	646	0	ENST00000269305.4:c.710T>A	p.Met237Lys	p.M237K	ENST00000269305	NM_001126112.2	237	aTg/aAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604765	48604766	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0037734-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			258	58	412	1	ENST00000342988.3:c.1589_1590del	p.His530ProfsTer46	p.H530Pfs*46	ENST00000342988	NM_005359.5	529	ttACac/ttac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TG			P-0037734-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			488	163	480	0	ENST00000256078.4:c.180_181delinsCA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggCAaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356230	66356230	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037734-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			326	154	559	2	ENST00000273854.3:c.1267A>C	p.Asn423His	p.N423H	ENST00000273854	NM_004439.5	423	Aac/Cac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562256	176562256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037734-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			554	212	675	0	ENST00000439151.2:c.152C>T	p.Ser51Leu	p.S51L	ENST00000439151	NM_022455.4	51	tCg/tTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	96	537	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	128	473	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714370	40714370	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	211	440	0	ENST00000373198.4:c.4027C>T	p.Arg1343Trp	p.R1343W	ENST00000373198	NM_133170.3	1343	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	312	639	0	ENST00000269305.4:c.536A>C	p.His179Pro	p.H179P	ENST00000269305	NM_001126112.2	179	cAt/cCt																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743841	46743841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	205	657	0	ENST00000371975.4:c.2131G>A	p.Asp711Asn	p.D711N	ENST00000371975	NM_003579.3	711	Gat/Aat																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627506	37627506	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	285	551	3	ENST00000447079.4:c.1421A>T	p.Asn474Ile	p.N474I	ENST00000447079	NM_015083.1	474	aAt/aTt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518004	176518004	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150920445		P-0037984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	147	744	2	ENST00000292408.4:c.502G>A	p.Val168Ile	p.V168I	ENST00000292408	NM_213647.1	168	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	227	669	1	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	210	598	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	117	400	0				ENST00000310581	NM_198253.2																																																																																
SHOC2	8036	MSKCC	GRCh37	10	112724537	112724537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	155	468	0	ENST00000369452.4:c.421G>C	p.Glu141Gln	p.E141Q	ENST00000369452	NM_007373.3	141	Gag/Cag																																																																														
EP300	2033	MSKCC	GRCh37	22	41564831	41564832	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTC			P-0037985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	338	436	0	ENST00000263253.7:c.4133_4135dup	p.Val1378_Gln1379insLeu	p.V1378_Q1379insL	ENST00000263253	NM_001429.3	1378	gtt/gTTCtt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157431648	157431648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	179	466	0	ENST00000346085.5:c.2324C>T	p.Ser775Phe	p.S775F	ENST00000346085	NM_020732.3	775	tCc/tTc																																																																														
MYC	4609	MSKCC	GRCh37	8	128750587	128750587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	207	577	0	ENST00000377970.2:c.124G>A	p.Glu42Lys	p.E42K	ENST00000377970	NM_002467.4	42	Gag/Aag																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112767305	112767305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	70	391	0	ENST00000369452.4:c.1178C>T	p.Ser393Leu	p.S393L	ENST00000369452	NM_007373.3	393	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	98	641	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																														
TEK	7010	MSKCC	GRCh37	9	27180300	27180300	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	31	468	1	ENST00000380036.4:c.964A>T	p.Met322Leu	p.M322L	ENST00000380036	NM_000459.3	322	Atg/Ttg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981921	70981921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	41	733	0	ENST00000276594.2:c.175G>C	p.Ala59Pro	p.A59P	ENST00000276594	NM_024504.3	59	Gca/Cca																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0038458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	376	681	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0038458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	191	577	2	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	621	1009	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030329	180030329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142322370		P-0038458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	135	903	0	ENST00000261937.6:c.3955C>T	p.Arg1319Trp	p.R1319W	ENST00000261937	NM_182925.4	1319	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244269	5244269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	304	863	3	ENST00000357368.4:c.1213G>A	p.Val405Ile	p.V405I	ENST00000357368	NM_002850.3	405	Gtc/Atc																																																																														
MGA	23269	MSKCC	GRCh37	15	42054013	42054013	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	101	424	0	ENST00000219905.7:c.7475G>C	p.Arg2492Pro	p.R2492P	ENST00000219905	NM_001164273.1	2492	cGg/cCg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40490804	40490804	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	276	464	0	ENST00000264657.5:c.495del	p.Glu166ArgfsTer23	p.E166Rfs*23	ENST00000264657	NM_139276.2	165	gtA/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922340	178922340	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	96	485	1	ENST00000263967.3:c.1109A>T	p.Asn370Ile	p.N370I	ENST00000263967	NM_006218.2	370	aAt/aTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507395	8507395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	37	376	2	ENST00000356435.5:c.1583C>T	p.Ser528Phe	p.S528F	ENST00000356435		528	tCt/tTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039901	47039901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	91	914	1	ENST00000329236.7:c.1010C>T	p.Ser337Leu	p.S337L	ENST00000329236	NM_001204466.1	337	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	55	431	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0038557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	31	264	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	53	604	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971099	+	missense_variant	Missense_Mutation	ONP	CCCG	CCCG	TCCA			P-0038557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	27	458	0	ENST00000304494.5:c.259_262delinsTGGA	p.Arg87_Glu88delinsTrpLys	p.R87_E88delinsWK	ENST00000304494	NM_000077.4	87	CGGGag/TGGAag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971099	+	missense_variant	Missense_Mutation	ONP	CCCG	CCCG	TCCA			P-0038557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	27	458	0	ENST00000304494.5:c.259_262delinsTGGA	p.Arg87_Glu88delinsTrpLys	p.R87_E88delinsWK	ENST00000304494	NM_000077.4	87	CGGGag/TGGAag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971099	+	missense_variant	Missense_Mutation	ONP	CCCG	CCCG	TCCA			P-0038557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	27	458	0	ENST00000304494.5:c.259_262delinsTGGA	p.Arg87_Glu88delinsTrpLys	p.R87_E88delinsWK	ENST00000304494	NM_000077.4	87	CGGGag/TGGAag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578549	7578550	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	21	747	2	ENST00000269305.4:c.380_381delinsTT	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCC/tTT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47061239	47061251	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAAACCTTACCT	CCAAACCTTACCT	-			P-0038559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	18	277	0	ENST00000409792.3:c.7430_7431+11del		p.X2477_splice	ENST00000409792	NM_014159.6	2477																																																																															
NF1	4763	MSKCC	GRCh37	17	29559149	29559149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	30	281	0	ENST00000358273.4:c.3256C>T	p.Gln1086Ter	p.Q1086*	ENST00000358273	NM_001042492.2	1086	Cag/Tag																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	147	703	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850786	63850786	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	53	439	0	ENST00000279873.7:c.1564C>T	p.Gln522Ter	p.Q522*	ENST00000279873	NM_032199.2	522	Caa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041351	42041352	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	47	559	0	ENST00000219905.7:c.5547_5548insTT	p.Glu1850LeufsTer16	p.E1850Lfs*16	ENST00000219905	NM_001164273.1	1849	tct/tcTTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29559860	29559860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	21	264	0	ENST00000358273.4:c.3457C>A	p.Leu1153Ile	p.L1153I	ENST00000358273	NM_001042492.2	1153	Ctc/Atc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46602902	46602902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	56	749	0	ENST00000263734.3:c.960G>T	p.Glu320Asp	p.E320D	ENST00000263734	NM_001430.4	320	gaG/gaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539012	187539012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	47	439	0	ENST00000441802.2:c.8728G>A	p.Asp2910Asn	p.D2910N	ENST00000441802	NM_005245.3	2910	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023393	27023394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGTCTTCCA			P-0038565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	56	345	0	ENST00000324856.7:c.502_511dup	p.Gln171ArgfsTer232	p.Q171Rfs*232	ENST00000324856	NM_006015.4	167	gcc/gCCGTCTTCCAcc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981298	201981298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	46	676	0	ENST00000359651.3:c.377G>C	p.Arg126Pro	p.R126P	ENST00000359651		126	cGa/cCa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948477	71948477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	48	962	0	ENST00000298229.2:c.3189C>G	p.Ile1063Met	p.I1063M	ENST00000298229	NM_001567.3	1063	atC/atG																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872049	37872049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	63	824	0	ENST00000269571.5:c.1370C>T	p.Ser457Leu	p.S457L	ENST00000269571		457	tCa/tTa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0038565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	128	518	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047034	128047034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	32	567	0	ENST00000285398.2:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000285398	NM_000122.1	234	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	123	378	0				ENST00000310581	NM_198253.2																																																																																
BTK	695	MSKCC	GRCh37	X	100608277	100608277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	23	316	0	ENST00000308731.7:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000308731	NM_000061.2	605	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	119	566	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	40	312	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221743	55221743	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	75	503	0	ENST00000275493.2:c.787A>C	p.Thr263Pro	p.T263P	ENST00000275493	NM_005228.3	263	Acc/Ccc																																																																														
RARA	5914	MSKCC	GRCh37	17	38510609	38510609	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	35	597	1	ENST00000254066.5:c.863A>G	p.Asp288Gly	p.D288G	ENST00000254066	NM_000964.3	288	gAc/gGc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59793426	59793460	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TAATAATTTTAAAATATATTTAAAAAATTAGTAGA	TAATAATTTTAAAATATATTTAAAAAATTAGTAGA	-			P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	29	279	0	ENST00000259008.2:c.2380-36_2380-2del		p.X794_splice	ENST00000259008	NM_032043.2	794																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561231	9561231	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	27	397	0	ENST00000353224.5:c.551A>T	p.Glu184Val	p.E184V	ENST00000353224	NM_177990.2	184	gAg/gTg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739858	145739858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	239	742	0	ENST00000428558.2:c.1672A>G	p.Thr558Ala	p.T558A	ENST00000428558	NM_004260.3	558	Acc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	528	727	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212456	5212456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	131	745	3	ENST00000357368.4:c.4661C>T	p.Ala1554Val	p.A1554V	ENST00000357368	NM_002850.3	1554	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	58	233	0	ENST00000257430.4:c.3904delC	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061439	38061439	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	214	561	0	ENST00000250448.2:c.550del	p.Gln184SerfsTer10	p.Q184Sfs*10	ENST00000250448	NM_004496.3	184	Cag/ag																																																																														
CARM1	10498	MSKCC	GRCh37	19	11024679	11024679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	129	524	0	ENST00000327064.4:c.796G>A	p.Glu266Lys	p.E266K	ENST00000327064	NM_199141.1	266	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	65	419	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782645	9782645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	149	787	0	ENST00000377346.4:c.2407C>A	p.Gln803Lys	p.Q803K	ENST00000377346	NM_005026.3	803	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579573	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGGACGGCAAG	TTGGGACGGCAAG	-			P-0038625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	90	694	0	ENST00000269305.4:c.102_114del	p.Leu35GlnfsTer5	p.L35Qfs*5	ENST00000269305	NM_001126112.2	34	ccCTTGCCGTCCCAA/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	68	483	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	122	1020	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857910	9857910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	76	573	1	ENST00000330684.3:c.3491C>T	p.Thr1164Met	p.T1164M	ENST00000330684	NM_001134407.1	1164	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	77	273	0	ENST00000257430.4:c.3980C>G	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tGa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584725	48584725	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	74	450	0	ENST00000342988.3:c.803G>A	p.Trp268Ter	p.W268*	ENST00000342988	NM_005359.5	268	tGg/tAg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869492	102869492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	73	585	1	ENST00000307046.8:c.149C>T	p.Pro50Leu	p.P50L	ENST00000307046	NM_001111285.1	50	cCg/cTg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59876491	59876491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	69	477	0	ENST00000259008.2:c.1310C>T	p.Pro437Leu	p.P437L	ENST00000259008	NM_032043.2	437	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	289	833	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280007	66280007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	10	194	0	ENST00000273854.3:c.1682C>A	p.Pro561Gln	p.P561Q	ENST00000273854	NM_004439.5	561	cCa/cAa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876392	35876392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	29	588	0	ENST00000303115.3:c.1184A>G	p.Lys395Arg	p.K395R	ENST00000303115	NM_002185.3	395	aAg/aGg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864658	68864658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	90	270	0	ENST00000288368.4:c.29G>A	p.Arg10His	p.R10H	ENST00000288368	NM_024870.2	10	cGc/cAc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29002038	29002038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	56	366	0	ENST00000282397.4:c.1127C>T	p.Ala376Val	p.A376V	ENST00000282397	NM_002019.4	376	gCg/gTg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243675669	243675669	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	27	233	0	ENST00000263826.5:c.1311A>C	p.Glu437Asp	p.E437D	ENST00000263826	NM_005465.4	437	gaA/gaC																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857066	9857066	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	50	307	0	ENST00000330684.3:c.4335A>C	p.Leu1445Phe	p.L1445F	ENST00000330684	NM_001134407.1	1445	ttA/ttC																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713724	30713724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	58	480	0	ENST00000359013.4:c.1124T>C	p.Leu375Pro	p.L375P	ENST00000359013	NM_001024847.2	375	cTg/cCg																																																																														
MST1	4485	MSKCC	GRCh37	3	49721984	49721984	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0038631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	27	207	0	ENST00000449682.2:c.1875A>C	p.Lys625Asn	p.K625N	ENST00000449682	NM_020998.3	625	aaA/aaC																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971246	13971246	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	84	462	0	ENST00000405192.2:c.683A>C	p.Lys228Thr	p.K228T	ENST00000405192	NM_001163147.1	228	aAg/aCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	197	243	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	154	304	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
CCND1	595	MSKCC	GRCh37	11	69466022	69466022	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	304	949	0	ENST00000227507.2:c.860C>G	p.Pro287Arg	p.P287R	ENST00000227507	NM_053056.2	287	cCc/cGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100291	27100291	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0038632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	498	596	1	ENST00000324856.7:c.4005-2A>T		p.X1335_splice	ENST00000324856	NM_006015.4	1335																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157100351	157100352	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	149	332	0	ENST00000346085.5:c.1289dup	p.Met430IlefsTer105	p.M430Ifs*105	ENST00000346085	NM_020732.3	430	atg/aTtg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44833954	44833954	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	228	467	0	ENST00000377967.4:c.378C>G	p.Tyr126Ter	p.Y126*	ENST00000377967	NM_021140.2	126	taC/taG																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	83	377	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101195	27101195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	399	739	0	ENST00000324856.7:c.4477C>T	p.Gln1493Ter	p.Q1493*	ENST00000324856	NM_006015.4	1493	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112177133	112177133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	63	352	0	ENST00000257430.4:c.5842G>A	p.Asp1948Asn	p.D1948N	ENST00000257430	NM_000038.5	1948	Gat/Aat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864739	37864739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	143	597	1	ENST00000269571.5:c.391G>A	p.Gly131Arg	p.G131R	ENST00000269571		131	Ggg/Agg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245334	153245334	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0038633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	208	423	0	ENST00000281708.4:c.1855+2T>G		p.X619_splice	ENST00000281708	NM_033632.3	619																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	1390	639	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39321417	39321417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	284	402	0	ENST00000373001.3:c.604G>C	p.Asp202His	p.D202H	ENST00000373001	NM_022157.3	202	Gac/Cac																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562999	21562999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1482	593	844	0	ENST00000382592.4:c.920C>T	p.Pro307Leu	p.P307L	ENST00000382592	NM_014572.2	307	cCt/cTt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682152	37682152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	263	402	1	ENST00000447079.4:c.3343G>A	p.Glu1115Lys	p.E1115K	ENST00000447079	NM_015083.1	1115	Gaa/Aaa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058712	180058712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	168	829	0	ENST00000261937.6:c.125A>G	p.Asp42Gly	p.D42G	ENST00000261937	NM_182925.4	42	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	242	741	2	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	212	826	2	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
SRC	6714	MSKCC	GRCh37	20	36012701	36012701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	48	177	1	ENST00000358208.4:c.145G>T	p.Gly49Cys	p.G49C	ENST00000358208		49	Ggc/Tgc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876566	35876566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	92	540	0	ENST00000303115.3:c.1358C>A	p.Ser453Tyr	p.S453Y	ENST00000303115	NM_002185.3	453	tCc/tAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151902221	151902221	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	62	593	0	ENST00000262189.6:c.3931A>G	p.Ile1311Val	p.I1311V	ENST00000262189	NM_170606.2	1311	Att/Gtt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0038641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	31	386	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	37	623	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0038641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	30	503	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
CDH1	999	MSKCC	GRCh37	16	68844172	68844172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	89	703	0	ENST00000261769.5:c.760G>A	p.Asp254Asn	p.D254N	ENST00000261769	NM_004360.3	254	Gat/Aat																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0038641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	61	774	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117935	70117935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	24	408	0	ENST00000245479.2:c.403C>T	p.Leu135Phe	p.L135F	ENST00000245479	NM_000346.3	135	Ctc/Ttc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732958	30732958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	33	365	0	ENST00000359013.4:c.1646A>G	p.Asp549Gly	p.D549G	ENST00000359013	NM_001024847.2	549	gAc/gGc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443864	52443864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	91	747	0	ENST00000460680.1:c.31G>A	p.Asp11Asn	p.D11N	ENST00000460680	NM_004656.3	11	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	160	408	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0038642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	126	512	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	414	873	0	ENST00000269305.4:c.434T>G	p.Leu145Arg	p.L145R	ENST00000269305	NM_001126112.2	145	cTg/cGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425125	49425125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	434	837	0	ENST00000301067.7:c.13363C>T	p.Arg4455Cys	p.R4455C	ENST00000301067	NM_003482.3	4455	Cgc/Tgc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63759930	63759930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	51	287	0	ENST00000279873.7:c.583C>A	p.Gln195Lys	p.Q195K	ENST00000279873	NM_032199.2	195	Cag/Aag																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617734	39617734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	41	386	0	ENST00000262039.4:c.1918G>A	p.Asp640Asn	p.D640N	ENST00000262039	NM_002647.2	640	Gat/Aat																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323978	31323978	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	22	146	0	ENST00000412585.2:c.585C>A	p.Tyr195Ter	p.Y195*	ENST00000412585	NM_005514.6	195	taC/taA																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249426	110249426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	118	987	0	ENST00000374672.4:c.1147A>G	p.Arg383Gly	p.R383G	ENST00000374672	NM_004235.4	383	Agg/Ggg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578462	7578478	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGGTGCCGGGCGGGG	GCGGGTGCCGGGCGGGG	-			P-0038646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	466	925	0	ENST00000269305.4:c.452_468del	p.Pro151ArgfsTer24	p.P151Rfs*24	ENST00000269305	NM_001126112.2	151	cCCCCGCCCGGCACCCGC/c																																																																														
APC	324	MSKCC	GRCh37	5	112173873	112173873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	71	376	0	ENST00000257430.4:c.2582G>A	p.Gly861Asp	p.G861D	ENST00000257430	NM_000038.5	861	gGc/gAc																																																																														
PIM1	5292	MSKCC	GRCh37	6	37139155	37139155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	18	623	0	ENST00000373509.5:c.495C>G	p.His165Gln	p.H165Q	ENST00000373509	NM_002648.3	165	caC/caG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	78	444	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	751	790	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	247	383	3	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748596	40748596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	172	513	1	ENST00000373198.4:c.2920C>T	p.Arg974Trp	p.R974W	ENST00000373198	NM_133170.3	974	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575150	48575150	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	85	396	1	ENST00000342988.3:c.344G>C	p.Cys115Ser	p.C115S	ENST00000342988	NM_005359.5	115	tGt/tCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	91	565	4	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411441	63411441	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	732	446	4	ENST00000330258.3:c.1726G>T	p.Glu576Ter	p.E576*	ENST00000330258	NM_152424.3	576	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			614	311	751	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273269	115273269	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	73	405	0	ENST00000438362.2:c.1189G>T	p.Gly397Cys	p.G397C	ENST00000438362	NM_001242891.1	397	Ggt/Tgt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844175	156844175	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	685	795	0	ENST00000524377.1:c.1178T>A	p.Val393Asp	p.V393D	ENST00000524377	NM_002529.3	393	gTc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426112	49426112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			849	64	714	0	ENST00000301067.7:c.12376G>C	p.Glu4126Gln	p.E4126Q	ENST00000301067	NM_003482.3	4126	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431492	49431492	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			801	156	679	0	ENST00000301067.7:c.9647A>T	p.Glu3216Val	p.E3216V	ENST00000301067	NM_003482.3	3216	gAg/gTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631586	28631587	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	78	396	2	ENST00000241453.7:c.381_382delinsAT	p.Met128Leu	p.M128L	ENST00000241453	NM_004119.2	127	tcCAtg/tcATtg																																																																														
RB1	5925	MSKCC	GRCh37	13	48955391	48955391	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	63	257	0	ENST00000267163.4:c.1507del	p.Ser503LeufsTer16	p.S503Lfs*16	ENST00000267163	NM_000321.2	503	Tct/ct																																																																														
MGA	23269	MSKCC	GRCh37	15	42041452	42041452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	184	560	0	ENST00000219905.7:c.5647G>A	p.Ala1883Thr	p.A1883T	ENST00000219905	NM_001164273.1	1883	Gca/Aca																																																																														
NF1	4763	MSKCC	GRCh37	17	29556178	29556178	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	58	126	0	ENST00000358273.4:c.2545G>T	p.Gly849Ter	p.G849*	ENST00000358273	NM_001042492.2	849	Gga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29661861	29661861	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	109	323	0	ENST00000358273.4:c.5818G>T	p.Glu1940Ter	p.E1940*	ENST00000358273	NM_001042492.2	1940	Gaa/Taa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860924	45860924	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	486	769	0	ENST00000391945.4:c.1271G>C	p.Arg424Thr	p.R424T	ENST00000391945	NM_000400.3	424	aGa/aCa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48032801	48032801	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182024561		P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	86	339	0	ENST00000234420.5:c.3601C>T	p.Leu1201Phe	p.L1201F	ENST00000234420	NM_000179.2	1201	Ctc/Ttc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248389	212248389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	90	322	0	ENST00000342788.4:c.3878G>T	p.Gly1293Val	p.G1293V	ENST00000342788	NM_005235.2	1293	gGc/gTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514522	41514522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	137	492	1	ENST00000373198.4:c.139C>A	p.Leu47Ile	p.L47I	ENST00000373198	NM_133170.3	47	Cta/Ata																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62294226	62294226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			858	105	599	0	ENST00000508582.2:c.594C>A	p.Phe198Leu	p.F198L	ENST00000508582		198	ttC/ttA																																																																														
TP63	8626	MSKCC	GRCh37	3	189590666	189590666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	77	425	0	ENST00000264731.3:c.1231T>C	p.Tyr411His	p.Y411H	ENST00000264731	NM_003722.4	411	Tat/Cat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637926	176637926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			739	81	594	0	ENST00000439151.2:c.2526G>T	p.Met842Ile	p.M842I	ENST00000439151	NM_022455.4	842	atG/atT																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652546	48652546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	330	500	0	ENST00000376670.3:c.1217C>A	p.Thr406Asn	p.T406N	ENST00000376670	NM_002049.3	406	aCt/aAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	CTGTGGGCT			P-0001758-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			820	351	396	0	ENST00000269571.5:c.2326_2327insCTGTGGGCT	p.Gly776delinsAlaValGlyCys	p.G776delinsAVGC	ENST00000269571		776	ggt/gCTGTGGGCTgt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			P-0002320-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1217	1254	369	0	ENST00000269571.5:c.2326_2327insTGT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTGTgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002320-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1201	170	382	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543896	212543896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002320-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1343	105	361	0	ENST00000342788.4:c.1503G>A	p.Met501Ile	p.M501I	ENST00000342788	NM_005235.2	501	atG/atA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950694	38950694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002320-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1759	146	480	0	ENST00000357387.3:c.3256C>G	p.Pro1086Ala	p.P1086A	ENST00000357387	NM_152756.3	1086	Cct/Gct																																																																														
PAK1	5058	MSKCC	GRCh37	11	77103412	77103412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002320-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1747	177	467	0	ENST00000356341.3:c.154G>A	p.Asp52Asn	p.D52N	ENST00000356341	NM_002576.4	52	Gac/Aac																																																																														
CDK12	51755	MSKCC	GRCh37	17	37649132	37649132	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002320-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1345	91	248	0	ENST00000447079.4:c.2237A>G	p.Asp746Gly	p.D746G	ENST00000447079	NM_015083.1	746	gAc/gGc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176012345	176012345	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1490	197	1002	0	ENST00000367669.3:c.1589C>G	p.Ala530Gly	p.A530G	ENST00000367669	NM_022457.5	530	gCt/gGt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965227	25965227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			491	314	1039	0	ENST00000435504.4:c.3979T>C	p.Tyr1327His	p.Y1327H	ENST00000435504		1327	Tat/Cat																																																																														
MSH2	4436	MSKCC	GRCh37	2	47707900	47707900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			688	160	1077	0	ENST00000233146.2:c.2524G>C	p.Glu842Gln	p.E842Q	ENST00000233146	NM_000251.2	842	Gag/Cag																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149453024	149453024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			399	239	877	0	ENST00000286301.3:c.922A>G	p.Asn308Asp	p.N308D	ENST00000286301	NM_005211.3	308	Aac/Gac																																																																														
HGF	3082	MSKCC	GRCh37	7	81334966	81334966	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			519	149	827	5	ENST00000222390.5:c.1861G>T	p.Gly621Ter	p.G621*	ENST00000222390	NM_000601.4	621	Gga/Tga																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67459192	67459192	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			278	184	897	0	ENST00000327367.4:c.607+1G>C		p.X203_splice	ENST00000327367	NM_005902.3	203																																																																															
BRCA1	672	MSKCC	GRCh37	17	41267759	41267759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			522	293	1181	1	ENST00000357654.3:c.118G>A	p.Asp40Asn	p.D40N	ENST00000357654	NM_007294.3	40	Gac/Aac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922195	39922329	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTTAATTTTCTGCTGTTTGGCAGGCGGCCTGGAGGCTGGTGCGCAGCTTGGCTGAGCCTGCTTTTTGCCGCCTGCACTGGTGGATGAAAGACTCTTCATGGGCGGAGAGCCGGAGAACACAGGCAAGCCTAAA	TCTTTAATTTTCTGCTGTTTGGCAGGCGGCCTGGAGGCTGGTGCGCAGCTTGGCTGAGCCTGCTTTTTGCCGCCTGCACTGGTGGATGAAAGACTCTTCATGGGCGGAGAGCCGGAGAACACAGGCAAGCCTAAA	-			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			311	167	591	1	ENST00000378444.4:c.3848-5_3977del		p.X1283_splice	ENST00000378444	NM_001123385.1	1283																																																																															
ELF3	1999	MSKCC	GRCh37	1	201983141	201983141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1468	566	1098	0	ENST00000359651.3:c.990C>G	p.Ser330Arg	p.S330R	ENST00000359651		330	agC/agG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827231	72827231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			259	52	988	3	ENST00000268489.5:c.9350C>T	p.Ala3117Val	p.A3117V	ENST00000268489	NM_006885.3	3117	gCg/gTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432829	432829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			738	168	1025	1	ENST00000399788.2:c.2087G>A	p.Arg696Gln	p.R696Q	ENST00000399788	NM_001042603.1	696	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427512	49427512	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			663	147	1084	0	ENST00000301067.7:c.10976del	p.Pro3659LeufsTer90	p.P3659Lfs*90	ENST00000301067	NM_003482.3	3659	cCt/ct																																																																														
KIT	3815	MSKCC	GRCh37	4	55594213	55594226	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAACTCAAAGTC	CTGAACTCAAAGTC	-			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			634	157	769	0	ENST00000288135.5:c.1920_1933del	p.Lys642ProfsTer3	p.K642Pfs*3	ENST00000288135	NM_000222.2	639	tCTGAACTCAAAGTC/t																																																																														
SYK	6850	MSKCC	GRCh37	9	93650804	93650804	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004593-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			766	146	611	0	ENST00000375746.1:c.1730A>C	p.Lys577Thr	p.K577T	ENST00000375746	NM_001174167.1	577	aAa/aCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	166	236	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	345	492	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	270	322	1	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417865	138417865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	52	450	1	ENST00000289153.2:c.1654G>A	p.Glu552Lys	p.E552K	ENST00000289153	NM_006219.2	552	Gaa/Aaa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001539	150001539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	197	255	0	ENST00000253339.5:c.2065G>C	p.Glu689Gln	p.E689Q	ENST00000253339		689	Gaa/Caa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265533	152265533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	191	334	0	ENST00000206249.3:c.986C>A	p.Ser329Tyr	p.S329Y	ENST00000206249	NM_000125.3	329	tCc/tAc																																																																														
BTK	695	MSKCC	GRCh37	X	100611806	100611806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	388	559	1	ENST00000308731.7:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000308731	NM_000061.2	439	Gaa/Aaa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463300	25463301	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TTT			P-0006162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	206	346	0	ENST00000264709.3:c.2192_2193insAAA	p.Phe731delinsLeuAsn	p.F731delinsLN	ENST00000264709	NM_175629.2	731	ttc/ttAAAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508823	106508823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	13	430	0	ENST00000359195.3:c.817C>T	p.Arg273Cys	p.R273C	ENST00000359195	NM_002649.2	273	Cgc/Tgc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127715	64127715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	60	449	0	ENST00000334205.4:c.208G>A	p.Ala70Thr	p.A70T	ENST00000334205	NM_003942.2	70	Gcg/Acg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888178	81888178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	17	625	0	ENST00000359376.3:c.323C>T	p.Thr108Met	p.T108M	ENST00000359376	NM_002661.3	108	aCg/aTg																																																																														
NF2	4771	MSKCC	GRCh37	22	30035197	30035197	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	30	459	0	ENST00000338641.4:c.359T>A	p.Leu120Ter	p.L120*	ENST00000338641	NM_000268.3	120	tTa/tAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55524241	55524241	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	34	511	0	ENST00000288135.5:c.61del	p.Gln21ArgfsTer9	p.Q21Rfs*9	ENST00000288135	NM_000222.2	20	gtC/gt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	219	459	0	ENST00000288135.5:c.1669T>G	p.Trp557Gly	p.W557G	ENST00000288135	NM_000222.2	557	Tgg/Ggg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955080	93955080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	343	513	0	ENST00000369303.4:c.2818T>C	p.Tyr940His	p.Y940H	ENST00000369303	NM_004440.3	940	Tat/Cat																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005421	150005421	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	311	468	0	ENST00000253339.5:c.804G>A	p.Trp268Ter	p.W268*	ENST00000253339		268	tgG/tgA																																																																														
RAC1	5879	MSKCC	GRCh37	7	6439806	6439806	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	337	359	0	ENST00000356142.4:c.332A>G	p.Asn111Ser	p.N111S	ENST00000356142	NM_018890.3	111	aAt/aGt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010535	48010547	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGGGCCCAGGC	CCTGGGCCCAGGC	-			P-0006501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	161	191	0	ENST00000234420.5:c.166_178del	p.Gly56TrpfsTer21	p.G56Wfs*21	ENST00000234420	NM_000179.2	55	CCTGGGCCCAGGCcc/cc																																																																														
KIT	3815	MSKCC	GRCh37	4	55592203	55592205	+	frameshift_variant	Frame_Shift_Del	DEL	AGG	AGG	T			P-0006501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	32	333	0	ENST00000288135.5:c.1527_1529delinsT	p.Lys509AsnfsTer2	p.K509Nfs*2	ENST00000288135	NM_000222.2	509	aaAGGt/aaTt																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2489217	2489217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	287	642	0	ENST00000355716.4:c.122C>A	p.Ser41Tyr	p.S41Y	ENST00000355716	NM_003820.2	41	tCc/tAc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073341	8073341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	480	893	0	ENST00000377482.5:c.1318G>T	p.Asp440Tyr	p.D440Y	ENST00000377482	NM_018948.3	440	Gac/Tac																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073460	8073460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	497	1119	1	ENST00000377482.5:c.1199G>A	p.Arg400Gln	p.R400Q	ENST00000377482	NM_018948.3	400	cGa/cAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16246013	16246013	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	320	535	0	ENST00000375759.3:c.1635+1G>A		p.X545_splice	ENST00000375759	NM_015001.2	545																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255346	16255346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151043425		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	431	732	1	ENST00000375759.3:c.2611C>T	p.Arg871Cys	p.R871C	ENST00000375759	NM_015001.2	871	Cgc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256547	16256547	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	277	590	0	ENST00000375759.3:c.3812A>G	p.Glu1271Gly	p.E1271G	ENST00000375759	NM_015001.2	1271	gAa/gGa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257770	16257770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	197	385	0	ENST00000375759.3:c.5035G>A	p.Val1679Ile	p.V1679I	ENST00000375759	NM_015001.2	1679	Gtc/Atc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260257	16260257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	117	238	1	ENST00000375759.3:c.7522C>T	p.Pro2508Ser	p.P2508S	ENST00000375759	NM_015001.2	2508	Cca/Tca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056224	27056224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	297	527	0	ENST00000324856.7:c.1220C>T	p.Pro407Leu	p.P407L	ENST00000324856	NM_006015.4	407	cCt/cTt																																																																														
JUN	3725	MSKCC	GRCh37	1	59248451	59248451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	51	462	0	ENST00000371222.2:c.292C>A	p.Leu98Met	p.L98M	ENST00000371222	NM_002228.3	98	Ctg/Atg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458467	120458467	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	131	371	0	ENST00000256646.2:c.6878A>G	p.His2293Arg	p.H2293R	ENST00000256646	NM_024408.3	2293	cAc/cGc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466432	120466432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	313	588	1	ENST00000256646.2:c.4687C>T	p.Arg1563Cys	p.R1563C	ENST00000256646	NM_024408.3	1563	Cgc/Tgc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162735790	162735790	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	257	489	1	ENST00000367921.3:c.1100-1G>T		p.X367_splice	ENST00000367921	NM_006182.2	367																																																																															
DDR2	4921	MSKCC	GRCh37	1	162742026	162742026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	306	548	0	ENST00000367921.3:c.1717C>T	p.Gln573Ter	p.Q573*	ENST00000367921	NM_006182.2	573	Cag/Tag																																																																														
MDM4	4194	MSKCC	GRCh37	1	204513673	204513673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	39	378	0	ENST00000367182.3:c.683C>A	p.Thr228Asn	p.T228N	ENST00000367182	NM_001278516.1	228	aCt/aAt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206658404	206658404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	242	501	0	ENST00000367120.3:c.1498C>T	p.Arg500Trp	p.R500W	ENST00000367120	NM_014002.3	500	Cgg/Tgg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206665012	206665012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	335	514	0	ENST00000367120.3:c.1765C>A	p.Leu589Met	p.L589M	ENST00000367120	NM_014002.3	589	Ctg/Atg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470027	25470027	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	180	370	0	ENST00000264709.3:c.1015G>A	p.Val339Met	p.V339M	ENST00000264709	NM_175629.2	339	Gtg/Atg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965935	25965935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	284	580	2	ENST00000435504.4:c.3271G>A	p.Ala1091Thr	p.A1091T	ENST00000435504		1091	Gct/Act																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25978956	25978956	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	333	536	0	ENST00000435504.4:c.967A>C	p.Asn323His	p.N323H	ENST00000435504		323	Aat/Cat																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25991736	25991736	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	199	388	0	ENST00000435504.4:c.506C>T	p.Ala169Val	p.A169V	ENST00000435504		169	gCg/gTg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026852	48026852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	266	563	0	ENST00000234420.5:c.1730G>A	p.Arg577His	p.R577H	ENST00000234420	NM_000179.2	577	cGc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027043	48027043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	252	508	0	ENST00000234420.5:c.1921G>T	p.Glu641Ter	p.E641*	ENST00000234420	NM_000179.2	641	Gaa/Taa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028265	48028265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	147	487	1	ENST00000234420.5:c.3143A>G	p.Gln1048Arg	p.Q1048R	ENST00000234420	NM_000179.2	1048	cAg/cGg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033753	48033753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	234	506	0	ENST00000234420.5:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000234420	NM_000179.2	1322	Gaa/Taa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715401	61715401	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	115	423	0	ENST00000401558.2:c.2212A>C	p.Met738Leu	p.M738L	ENST00000401558	NM_003400.3	738	Atg/Ctg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172215	99172215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	271	544	0	ENST00000074304.5:c.1781C>T	p.Ser594Phe	p.S594F	ENST00000074304	NM_001134224.1	594	tCc/tTc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99189362	99189362	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	244	488	0	ENST00000074304.5:c.2618A>C	p.Asn873Thr	p.N873T	ENST00000074304	NM_001134224.1	873	aAc/aCc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047800	128047800	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	301	579	0	ENST00000285398.2:c.521G>T	p.Arg174Ile	p.R174I	ENST00000285398	NM_000122.1	174	aGa/aTa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095520	178095520	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	221	423	0	ENST00000397062.3:c.1811A>C	p.Lys604Thr	p.K604T	ENST00000397062	NM_006164.4	604	aAa/aCa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198268346	198268346	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	279	504	0	ENST00000335508.6:c.1682A>T	p.Tyr561Phe	p.Y561F	ENST00000335508	NM_012433.2	561	tAc/tTc																																																																														
CASP8	841	MSKCC	GRCh37	2	202136238	202136238	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	253	515	0	ENST00000358485.4:c.483-1G>T		p.X161_splice	ENST00000358485	NM_001080125.1	161																																																																															
CTLA4	1493	MSKCC	GRCh37	2	204735458	204735458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	279	519	0	ENST00000302823.3:c.259G>A	p.Ala87Thr	p.A87T	ENST00000302823	NM_005214.4	87	Gca/Aca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543829	212543829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	273	460	0	ENST00000342788.4:c.1570C>T	p.Arg524Cys	p.R524C	ENST00000342788	NM_005235.2	524	Cgc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578349	212578349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	179	375	1	ENST00000342788.4:c.908C>A	p.Ser303Tyr	p.S303Y	ENST00000342788	NM_005235.2	303	tCt/tAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812251	212812251	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	72	506	0	ENST00000342788.4:c.325A>C	p.Lys109Gln	p.K109Q	ENST00000342788	NM_005235.2	109	Aaa/Caa																																																																														
BARD1	580	MSKCC	GRCh37	2	215593434	215593434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	39	457	0	ENST00000260947.4:c.2300T>C	p.Val767Ala	p.V767A	ENST00000260947	NM_000465.2	767	gTg/gCg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659832	227659832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	95	163	0	ENST00000305123.5:c.3623A>G	p.His1208Arg	p.H1208R	ENST00000305123	NM_005544.2	1208	cAt/cGt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662924	227662924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	338	628	1	ENST00000305123.5:c.531G>T	p.Lys177Asn	p.K177N	ENST00000305123	NM_005544.2	177	aaG/aaT																																																																														
RAF1	5894	MSKCC	GRCh37	3	12633244	12633244	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	127	570	1	ENST00000251849.4:c.1156C>T	p.Gln386Ter	p.Q386*	ENST00000251849	NM_002880.3	386	Caa/Taa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12650355	12650355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	338	569	1	ENST00000251849.4:c.491G>A	p.Arg164Gln	p.R164Q	ENST00000251849	NM_002880.3	164	cGa/cAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41274877	41274877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	238	490	1	ENST00000349496.5:c.1127G>A	p.Arg376His	p.R376H	ENST00000349496	NM_001904.3	376	cGt/cAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162449	47162449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	285	521	0	ENST00000409792.3:c.3677C>A	p.Pro1226Gln	p.P1226Q	ENST00000409792	NM_014159.6	1226	cCa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162783	47162783	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	127	381	1	ENST00000409792.3:c.3343G>T	p.Glu1115Ter	p.E1115*	ENST00000409792	NM_014159.6	1115	Gaa/Taa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934752	49934752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	369	704	1	ENST00000296474.3:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000296474	NM_002447.2	715	cGg/cAg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436399	52436399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	240	457	3	ENST00000460680.1:c.2095C>T	p.Arg699Trp	p.R699W	ENST00000460680	NM_004656.3	699	Cgg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	206	402	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643540	52643540	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	310	580	0	ENST00000394830.3:c.2356T>G	p.Phe786Val	p.F786V	ENST00000394830	NM_018313.4	786	Ttt/Gtt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	249	541	1	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																														
MITF	4286	MSKCC	GRCh37	3	69987148	69987148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	235	462	0	ENST00000352241.4:c.530C>T	p.Ala177Val	p.A177V	ENST00000352241	NM_198159.2	177	gCa/gTa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71008489	71008489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	172	592	0	ENST00000318789.4:c.1943C>T	p.Pro648Leu	p.P648L	ENST00000318789	NM_032682.5	648	cCc/cTc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247463	71247463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	292	479	0	ENST00000318789.4:c.70A>G	p.Asn24Asp	p.N24D	ENST00000318789	NM_032682.5	24	Aac/Gac																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72890203	72890203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	264	570	0	ENST00000325599.8:c.479G>A	p.Arg160Gln	p.R160Q	ENST00000325599	NM_018130.2	160	cGg/cAg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72891469	72891469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	76	444	0	ENST00000325599.8:c.293G>T	p.Arg98Ile	p.R98I	ENST00000325599	NM_018130.2	98	aGa/aTa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72891538	72891538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	210	443	2	ENST00000325599.8:c.224G>A	p.Arg75His	p.R75H	ENST00000325599	NM_018130.2	75	cGc/cAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448624	89448624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	247	527	2	ENST00000336596.2:c.1588C>T	p.Pro530Ser	p.P530S	ENST00000336596	NM_005233.5	530	Cca/Tca																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119562107	119562107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139402886		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	251	493	0	ENST00000316626.5:c.1229C>T	p.Ala410Val	p.A410V	ENST00000316626		410	gCg/gTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911523	134911523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	67	601	0	ENST00000398015.3:c.1988G>A	p.Arg663Gln	p.R663Q	ENST00000398015	NM_004441.4	663	cGg/cAg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138409931	138409931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	300	454	1	ENST00000289153.2:c.1947G>T	p.Glu649Asp	p.E649D	ENST00000289153	NM_006219.2	649	gaG/gaT																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138478146	138478146	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	307	516	0	ENST00000289153.2:c.40A>C	p.Ile14Leu	p.I14L	ENST00000289153	NM_006219.2	14	Atc/Ctc																																																																														
ATR	545	MSKCC	GRCh37	3	142185236	142185236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	165	598	0	ENST00000350721.4:c.6827C>A	p.Thr2276Asn	p.T2276N	ENST00000350721	NM_001184.3	2276	aCc/aAc																																																																														
ATR	545	MSKCC	GRCh37	3	142278201	142278201	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	173	382	0	ENST00000350721.4:c.1624A>C	p.Lys542Gln	p.K542Q	ENST00000350721	NM_001184.3	542	Aaa/Caa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948056	178948056	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	237	439	0	ENST00000263967.3:c.2828A>C	p.Lys943Thr	p.K943T	ENST00000263967	NM_006218.2	943	aAa/aCa																																																																														
TP63	8626	MSKCC	GRCh37	3	189526194	189526194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	320	580	2	ENST00000264731.3:c.458G>T	p.Ser153Ile	p.S153I	ENST00000264731	NM_003722.4	153	aGc/aTc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808862	1808862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140211846		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	147	623	1	ENST00000260795.2:c.2294C>T	p.Ala765Val	p.A765V	ENST00000260795		765	gCg/gTg																																																																														
FIP1L1	81608	MSKCC	GRCh37	4	54280854	54280854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	362	592	0	ENST00000337488.6:c.888G>T	p.Gln296His	p.Q296H	ENST00000337488	NM_030917.3	296	caG/caT																																																																														
KDR	3791	MSKCC	GRCh37	4	55962398	55962398	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	293	646	0	ENST00000263923.4:c.2726G>A	p.Gly909Glu	p.G909E	ENST00000263923	NM_002253.2	909	gGa/gAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55991433	55991433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	220	555	1	ENST00000263923.4:c.28G>A	p.Ala10Thr	p.A10T	ENST00000263923	NM_002253.2	10	Gcc/Acc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231680	66231680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	264	555	0	ENST00000273854.3:c.2020T>C	p.Cys674Arg	p.C674R	ENST00000273854	NM_004439.5	674	Tgt/Cgt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66270122	66270122	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140536477		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	330	633	0	ENST00000273854.3:c.1760C>T	p.Ala587Val	p.A587V	ENST00000273854	NM_004439.5	587	gCa/gTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467697	66467697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	39	474	0	ENST00000273854.3:c.572G>A	p.Arg191His	p.R191H	ENST00000273854	NM_004439.5	191	cGt/cAt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143350344	143350344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	111	324	0	ENST00000262992.4:c.118C>T	p.Gln40Ter	p.Q40*	ENST00000262992	NM_001101669.1	40	Cag/Tag																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143350355	143350355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	22	307	0	ENST00000262992.4:c.107C>A	p.Pro36Gln	p.P36Q	ENST00000262992	NM_001101669.1	36	cCa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	273	427	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247174	153247174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	219	497	0	ENST00000281708.4:c.1628G>A	p.Arg543Lys	p.R543K	ENST00000281708	NM_033632.3	543	aGa/aAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534377	187534377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	259	574	1	ENST00000441802.2:c.9349G>A	p.Asp3117Asn	p.D3117N	ENST00000441802	NM_005245.3	3117	Gat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538862	187538862	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	37	362	0	ENST00000441802.2:c.8878G>T	p.Gly2960Ter	p.G2960*	ENST00000441802	NM_005245.3	2960	Gga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540027	187540027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	124	557	0	ENST00000441802.2:c.7713G>T	p.Lys2571Asn	p.K2571N	ENST00000441802	NM_005245.3	2571	aaG/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549707	187549707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	82	545	1	ENST00000441802.2:c.4534G>A	p.Gly1512Ser	p.G1512S	ENST00000441802	NM_005245.3	1512	Ggc/Agc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557302	187557302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	339	580	1	ENST00000441802.2:c.4060G>A	p.Glu1354Lys	p.E1354K	ENST00000441802	NM_005245.3	1354	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629619	187629619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	50	476	1	ENST00000441802.2:c.1363G>T	p.Gly455Cys	p.G455C	ENST00000441802	NM_005245.3	455	Ggt/Tgt																																																																														
SDHA	6389	MSKCC	GRCh37	5	251567	251567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	58	514	0	ENST00000264932.6:c.1778C>T	p.Ala593Val	p.A593V	ENST00000264932	NM_004168.2	593	gCc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1278854	1278854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	54	503	3	ENST00000310581.5:c.2188G>A	p.Ala730Thr	p.A730T	ENST00000310581	NM_198253.2	730	Gcc/Acc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38944623	38944623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	211	485	0	ENST00000357387.3:c.4838G>A	p.Arg1613His	p.R1613H	ENST00000357387	NM_152756.3	1613	cGc/cAc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39002730	39002730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	321	444	0	ENST00000357387.3:c.299G>A	p.Arg100Gln	p.R100Q	ENST00000357387	NM_152756.3	100	cGa/cAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181765	56181765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	189	368	4	ENST00000399503.3:c.3989C>T	p.Ser1330Leu	p.S1330L	ENST00000399503	NM_005921.1	1330	tCg/tTg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659288	86659288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	77	544	1	ENST00000274376.6:c.1577C>A	p.Ser526Tyr	p.S526Y	ENST00000274376	NM_002890.2	526	tCt/tAt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86665672	86665672	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	167	376	0	ENST00000274376.6:c.1653A>C	p.Glu551Asp	p.E551D	ENST00000274376	NM_002890.2	551	gaA/gaC																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672844	86672844	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	184	289	0	ENST00000274376.6:c.2331A>C	p.Glu777Asp	p.E777D	ENST00000274376	NM_002890.2	777	gaA/gaC																																																																														
APC	324	MSKCC	GRCh37	5	112173647	112173647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	226	479	0	ENST00000257430.4:c.2356C>T	p.Arg786Cys	p.R786C	ENST00000257430	NM_000038.5	786	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	337	666	2	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	191	429	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505025	149505025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	244	453	0	ENST00000261799.4:c.1790G>A	p.Arg597Gln	p.R597Q	ENST00000261799	NM_002609.3	597	cGg/cAg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518782	176518782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	272	488	0	ENST00000292408.4:c.700C>T	p.Arg234Cys	p.R234C	ENST00000292408	NM_213647.1	234	Cgc/Tgc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523357	176523357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	221	532	0	ENST00000292408.4:c.2014G>A	p.Val672Met	p.V672M	ENST00000292408	NM_213647.1	672	Gtg/Atg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047965	180047965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	230	549	0	ENST00000261937.6:c.2210G>A	p.Arg737His	p.R737H	ENST00000261937	NM_182925.4	737	cGc/cAc																																																																														
IRF4	3662	MSKCC	GRCh37	6	394896	394896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	113	442	1	ENST00000380956.4:c.292C>T	p.Arg98Trp	p.R98W	ENST00000380956	NM_001195286.1	98	Cgg/Tgg																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225539	26225539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	605	1148	0	ENST00000360408.1:c.157C>T	p.Arg53Cys	p.R53C	ENST00000360408	NM_003532.2	53	Cgt/Tgt																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912857	29912857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	38	296	0	ENST00000376809.5:c.1034C>T	p.Thr345Ile	p.T345I	ENST00000376809	NM_002116.7	345	aCt/aTt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670344	30670344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	432	680	0	ENST00000376406.3:c.6088C>T	p.Pro2030Ser	p.P2030S	ENST00000376406	NM_014641.2	2030	Cct/Tct																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673724	30673724	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61733207		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	300	575	1	ENST00000376406.3:c.3236G>A	p.Arg1079His	p.R1079H	ENST00000376406	NM_014641.2	1079	cGt/cAt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681476	30681476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	314	561	2	ENST00000376406.3:c.536G>A	p.Arg179His	p.R179H	ENST00000376406	NM_014641.2	179	cGt/cAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93968000	93968000	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	307	550	1	ENST00000369303.4:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000369303	NM_004440.3	643	Gaa/Taa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969189	93969189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	345	658	0	ENST00000369303.4:c.1807C>A	p.Pro603Thr	p.P603T	ENST00000369303	NM_004440.3	603	Cca/Aca																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979215	93979215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	365	712	1	ENST00000369303.4:c.1613C>T	p.Ala538Val	p.A538V	ENST00000369303	NM_004440.3	538	gCt/gTt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553011	106553011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	220	463	1	ENST00000369096.4:c.976C>T	p.Arg326Cys	p.R326C	ENST00000369096	NM_001198.3	326	Cgc/Tgc																																																																														
FYN	2534	MSKCC	GRCh37	6	112029156	112029156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1251	116	777	1	ENST00000368678.4:c.412G>A	p.Val138Met	p.V138M	ENST00000368678		138	Gtg/Atg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117629975	117629975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	209	498	0	ENST00000368508.3:c.6551G>T	p.Arg2184Ile	p.R2184I	ENST00000368508	NM_002944.2	2184	aGa/aTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708052	117708052	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	235	517	0	ENST00000368508.3:c.2125G>T	p.Asp709Tyr	p.D709Y	ENST00000368508	NM_002944.2	709	Gac/Tac																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519291	137519291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	125	489	0	ENST00000367739.4:c.1347A>G	p.Ile449Met	p.I449M	ENST00000367739	NM_000416.2	449	atA/atG																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997697	149997697	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs145871963		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	213	422	0	ENST00000253339.5:c.2770C>T	p.Arg924Ter	p.R924*	ENST00000253339		924	Cga/Tga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001176	150001176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	346	667	0	ENST00000253339.5:c.2428G>A	p.Ala810Thr	p.A810T	ENST00000253339		810	Gca/Aca																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005300	150005300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	346	597	0	ENST00000253339.5:c.925C>T	p.Pro309Ser	p.P309S	ENST00000253339		309	Ccc/Tcc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023019	150023019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	362	648	1	ENST00000253339.5:c.244C>T	p.Arg82Ter	p.R82*	ENST00000253339		82	Cga/Tga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023160	150023160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	311	584	2	ENST00000253339.5:c.103C>T	p.Arg35Trp	p.R35W	ENST00000253339		35	Cgg/Tgg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265353	152265353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188957694		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	289	592	0	ENST00000206249.3:c.806G>A	p.Arg269His	p.R269H	ENST00000206249	NM_000125.3	269	cGc/cAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100605	157100605	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	193	412	0	ENST00000346085.5:c.1542G>T	p.Gln514His	p.Q514H	ENST00000346085	NM_020732.3	514	caG/caT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517397	157517397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	377	581	0	ENST00000346085.5:c.3961C>A	p.Leu1321Met	p.L1321M	ENST00000346085	NM_020732.3	1321	Ctg/Atg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527797	157527797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	225	395	1	ENST00000346085.5:c.5522C>T	p.Pro1841Leu	p.P1841L	ENST00000346085	NM_020732.3	1841	cCt/cTt																																																																														
PARK2	5071	MSKCC	GRCh37	6	161807903	161807903	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	232	434	0	ENST00000366898.1:c.1090T>G	p.Phe364Val	p.F364V	ENST00000366898	NM_004562.2	364	Ttc/Gtc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976831	2976831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	283	568	0	ENST00000396946.4:c.1181C>T	p.Ser394Leu	p.S394L	ENST00000396946	NM_032415.4	394	tCg/tTg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935661	13935661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	45	516	0	ENST00000405192.2:c.1195T>C	p.Phe399Leu	p.F399L	ENST00000405192	NM_001163147.1	399	Ttc/Ctc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946171	13946171	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	210	474	0	ENST00000405192.2:c.925C>T	p.Arg309Ter	p.R309*	ENST00000405192	NM_001163147.1	309	Cga/Tga																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946222	13946222	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	97	273	1	ENST00000405192.2:c.874G>T	p.Asp292Tyr	p.D292Y	ENST00000405192	NM_001163147.1	292	Gac/Tac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	281	394	0	ENST00000275493.2:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000275493	NM_005228.3	761	Gat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259469	55259469	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146795390		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	48	554	2	ENST00000275493.2:c.2527G>A	p.Val843Ile	p.V843I	ENST00000275493	NM_005228.3	843	Gta/Ata																																																																														
HGF	3082	MSKCC	GRCh37	7	81372746	81372746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	294	568	2	ENST00000222390.5:c.788C>T	p.Pro263Leu	p.P263L	ENST00000222390	NM_000601.4	263	cCc/cTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81374361	81374361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	371	506	2	ENST00000222390.5:c.701G>A	p.Arg234His	p.R234H	ENST00000222390	NM_000601.4	234	cGc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836323	151836323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	277	398	1	ENST00000262189.6:c.14482C>T	p.Arg4828Cys	p.R4828C	ENST00000262189	NM_170606.2	4828	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845244	151845244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	98	527	0	ENST00000262189.6:c.13768C>T	p.Arg4590Cys	p.R4590C	ENST00000262189	NM_170606.2	4590	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845763	151845763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	425	565	2	ENST00000262189.6:c.13249G>A	p.Ala4417Thr	p.A4417T	ENST00000262189	NM_170606.2	4417	Gca/Aca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874052	151874052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	348	563	0	ENST00000262189.6:c.8486C>T	p.Pro2829Leu	p.P2829L	ENST00000262189	NM_170606.2	2829	cCa/cTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874626	151874626	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	288	530	0	ENST00000262189.6:c.7912T>G	p.Ser2638Ala	p.S2638A	ENST00000262189	NM_170606.2	2638	Tct/Gct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152055755	152055755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	186	390	0	ENST00000262189.6:c.167G>A	p.Arg56Gln	p.R56Q	ENST00000262189	NM_170606.2	56	cGa/cAa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271174	38271174	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	139	339	0	ENST00000425967.3:c.2534T>G	p.Leu845Arg	p.L845R	ENST00000425967	NM_001174067.1	845	cTt/cGt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287397	38287397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145315779		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	252	515	0	ENST00000425967.3:c.260G>A	p.Arg87His	p.R87H	ENST00000425967	NM_001174067.1	87	cGc/cAc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117870684	117870684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	69	813	0	ENST00000297338.2:c.388G>A	p.Ala130Thr	p.A130T	ENST00000297338	NM_006265.2	130	Gcc/Acc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738064	145738064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	52	690	1	ENST00000428558.2:c.2846G>A	p.Cys949Tyr	p.C949Y	ENST00000428558	NM_004260.3	949	tGc/tAc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072504	5072504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	158	307	0	ENST00000381652.3:c.1654G>A	p.Gly552Ser	p.G552S	ENST00000381652	NM_004972.3	552	Ggc/Agc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319950	8319950	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	308	398	0	ENST00000356435.5:c.5551A>G	p.Thr1851Ala	p.T1851A	ENST00000356435		1851	Act/Gct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404576	8404576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146844299		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	363	558	1	ENST00000356435.5:c.4171G>A	p.Ala1391Thr	p.A1391T	ENST00000356435		1391	Gca/Aca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8733794	8733794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	386	520	1	ENST00000356435.5:c.50G>A	p.Arg17His	p.R17H	ENST00000356435		17	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974798	21974798	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	35	150	0	ENST00000304494.5:c.29A>T	p.Glu10Val	p.E10V	ENST00000304494	NM_000077.4	10	gAg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974798	21974798	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	35	150	0	ENST00000304494.5:c.29A>T	p.Glu10Val	p.E10V	ENST00000304494	NM_000077.4	10	gAg/gTg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80343580	80343580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	320	274	0	ENST00000286548.4:c.739C>T	p.Arg247Ter	p.R247*	ENST00000286548	NM_002072.3	247	Cga/Tga																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80646130	80646130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	18	42	0	ENST00000286548.4:c.22G>T	p.Ala8Ser	p.A8S	ENST00000286548	NM_002072.3	8	Gcg/Tcg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482158	87482158	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs149694868		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	210	444	0	ENST00000277120.3:c.1445G>A	p.Gly482Asp	p.G482D	ENST00000277120		482	gGc/gAc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635252	87635252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	332	399	0	ENST00000277120.3:c.2304G>T	p.Gln768His	p.Q768H	ENST00000277120		768	caG/caT																																																																														
SYK	6850	MSKCC	GRCh37	9	93637049	93637049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	321	563	1	ENST00000375746.1:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000375746	NM_001174167.1	367	Cga/Tga																																																																														
SYK	6850	MSKCC	GRCh37	9	93639903	93639903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	91	461	0	ENST00000375746.1:c.1232C>T	p.Pro411Leu	p.P411L	ENST00000375746	NM_001174167.1	411	cCc/cTc																																																																														
SYK	6850	MSKCC	GRCh37	9	93650128	93650128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	78	577	0	ENST00000375746.1:c.1679T>C	p.Val560Ala	p.V560A	ENST00000375746	NM_001174167.1	560	gTg/gCg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239912	98239912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	261	477	0	ENST00000331920.6:c.1420G>A	p.Val474Ile	p.V474I	ENST00000331920	NM_000264.3	474	Gtc/Atc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98248055	98248055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	652	638	0	ENST00000331920.6:c.496G>T	p.Gly166Cys	p.G166C	ENST00000331920	NM_000264.3	166	Ggt/Tgt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270571	98270571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	79	86	0	ENST00000331920.6:c.73G>A	p.Gly25Arg	p.G25R	ENST00000331920	NM_000264.3	25	Gga/Aga																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891287	101891287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	550	537	1	ENST00000374994.4:c.248C>T	p.Pro83Leu	p.P83L	ENST00000374994	NM_004612.2	83	cCg/cTg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900171	101900171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	241	449	0	ENST00000374994.4:c.605C>T	p.Ala202Val	p.A202V	ENST00000374994	NM_004612.2	202	gCg/gTg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907074	101907074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	256	471	0	ENST00000374994.4:c.1034G>A	p.Gly345Glu	p.G345E	ENST00000374994	NM_004612.2	345	gGa/gAa																																																																														
ABL1	25	MSKCC	GRCh37	9	133730245	133730245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	278	543	2	ENST00000318560.5:c.311C>T	p.Thr104Ile	p.T104I	ENST00000318560	NM_005157.4	104	aCc/aTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396512	139396512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	238	528	0	ENST00000277541.6:c.5413C>A	p.Leu1805Ile	p.L1805I	ENST00000277541	NM_017617.3	1805	Ctc/Atc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412717	139412717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	288	623	2	ENST00000277541.6:c.1127G>A	p.Cys376Tyr	p.C376Y	ENST00000277541	NM_017617.3	376	tGc/tAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417436	139417436	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182763411		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	165	604	1	ENST00000277541.6:c.608G>A	p.Arg203His	p.R203H	ENST00000277541	NM_017617.3	203	cGc/cAc																																																																														
RET	5979	MSKCC	GRCh37	10	43610186	43610186	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	296	801	0	ENST00000355710.3:c.2136+2T>C		p.X712_splice	ENST00000355710	NM_020975.4	712																																																																															
TET1	80312	MSKCC	GRCh37	10	70412277	70412277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	270	635	0	ENST00000373644.4:c.4387G>A	p.Ala1463Thr	p.A1463T	ENST00000373644	NM_030625.2	1463	Gca/Aca																																																																														
TET1	80312	MSKCC	GRCh37	10	70446203	70446203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	45	530	0	ENST00000373644.4:c.5143G>T	p.Asp1715Tyr	p.D1715Y	ENST00000373644	NM_030625.2	1715	Gac/Tac																																																																														
TET1	80312	MSKCC	GRCh37	10	70446272	70446272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	233	394	0	ENST00000373644.4:c.5212G>T	p.Ala1738Ser	p.A1738S	ENST00000373644	NM_030625.2	1738	Gca/Tca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693000	89693000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	144	274	0	ENST00000371953.3:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000371953	NM_000314.4	162	Gac/Tac																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123246935	123246935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113014479		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	240	528	2	ENST00000358487.5:c.1990C>T	p.Arg664Trp	p.R664W	ENST00000358487	NM_000141.4	664	Cgg/Tgg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156668	2156668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	52	663	0	ENST00000434045.2:c.254G>A	p.Ser85Asn	p.S85N	ENST00000434045	NM_001127598.1	85	aGt/aAt																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251961	8251961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	267	671	2	ENST00000335790.3:c.116C>T	p.Ala39Val	p.A39V	ENST00000335790	NM_002315.2	39	gCa/gTa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741493	17741493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	243	436	0	ENST00000250003.3:c.164C>T	p.Ala55Val	p.A55V	ENST00000250003	NM_002478.4	55	gCg/gTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137020	64137020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	274	479	0	ENST00000334205.4:c.1531C>T	p.Arg511Cys	p.R511C	ENST00000334205	NM_003942.2	511	Cgc/Tgc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202630	67202630	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	33	330	1	ENST00000312629.5:c.1439C>A	p.Pro480Gln	p.P480Q	ENST00000312629	NM_003952.2	480	cCa/cAa																																																																														
PAK1	5058	MSKCC	GRCh37	11	77090300	77090300	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	335	589	0	ENST00000356341.3:c.425A>G	p.Tyr142Cys	p.Y142C	ENST00000356341	NM_002576.4	142	tAc/tGc																																																																														
EED	8726	MSKCC	GRCh37	11	85975226	85975226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	211	417	0	ENST00000263360.6:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000263360	NM_003797.3	216	cGa/cAa																																																																														
EED	8726	MSKCC	GRCh37	11	85988124	85988124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	45	555	0	ENST00000263360.6:c.1069G>A	p.Asp357Asn	p.D357N	ENST00000263360	NM_003797.3	357	Gat/Aat																																																																														
PGR	5241	MSKCC	GRCh37	11	100933432	100933432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	360	666	0	ENST00000325455.5:c.1958C>A	p.Ala653Asp	p.A653D	ENST00000325455	NM_001202474.3	653	gCt/gAt																																																																														
ATM	472	MSKCC	GRCh37	11	108196243	108196243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	100	406	0	ENST00000278616.4:c.6779T>C	p.Ile2260Thr	p.I2260T	ENST00000278616	NM_000051.3	2260	aTa/aCa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344723	118344723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	109	523	0	ENST00000534358.1:c.2849T>C	p.Leu950Pro	p.L950P	ENST00000534358	NM_005933.3	950	cTt/cCt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376306	118376306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	445	785	2	ENST00000534358.1:c.9699G>T	p.Lys3233Asn	p.K3233N	ENST00000534358	NM_005933.3	3233	aaG/aaT																																																																														
KDM5A	5927	MSKCC	GRCh37	12	441088	441088	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	370	593	0	ENST00000399788.2:c.1670A>T	p.Gln557Leu	p.Q557L	ENST00000399788	NM_001042603.1	557	cAg/cTg																																																																														
RAD52	5893	MSKCC	GRCh37	12	1023137	1023137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	299	590	4	ENST00000358495.3:c.1118G>A	p.Ser373Asn	p.S373N	ENST00000358495	NM_134424.2	373	aGc/aAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18439865	18439865	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	65	357	0	ENST00000266497.5:c.761+2T>C		p.X254_splice	ENST00000266497		254																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446850	18446850	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	159	342	0	ENST00000266497.5:c.935A>G	p.Lys312Arg	p.K312R	ENST00000266497		312	aAa/aGa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641499	18641499	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	328	558	0	ENST00000266497.5:c.2498A>C	p.Lys833Thr	p.K833T	ENST00000266497		833	aAa/aCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	147	431	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398253	25398253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	294	503	0	ENST00000256078.4:c.66G>T	p.Gln22His	p.Q22H	ENST00000256078	NM_033360.2	22	caG/caT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246324	46246324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	249	415	1	ENST00000334344.6:c.4418C>A	p.Ser1473Tyr	p.S1473Y	ENST00000334344	NM_152641.2	1473	tCt/tAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246470	46246470	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	329	632	0	ENST00000334344.6:c.4564A>G	p.Thr1522Ala	p.T1522A	ENST00000334344	NM_152641.2	1522	Act/Gct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427014	49427014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	34	417	1	ENST00000301067.7:c.11474G>T	p.Arg3825Ile	p.R3825I	ENST00000301067	NM_003482.3	3825	aGa/aTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434244	49434244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	445	849	3	ENST00000301067.7:c.7309C>T	p.Pro2437Ser	p.P2437S	ENST00000301067	NM_003482.3	2437	Cca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434664	49434664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	248	465	0	ENST00000301067.7:c.6889C>T	p.Pro2297Ser	p.P2297S	ENST00000301067	NM_003482.3	2297	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440420	49440420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	48	430	1	ENST00000301067.7:c.4390G>A	p.Val1464Ile	p.V1464I	ENST00000301067	NM_003482.3	1464	Gtc/Atc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446350	49446350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	278	450	0	ENST00000301067.7:c.1255C>A	p.Leu419Ile	p.L419I	ENST00000301067	NM_003482.3	419	Cta/Ata																																																																														
GLI1	2735	MSKCC	GRCh37	12	57857520	57857520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	60	714	1	ENST00000228682.2:c.46C>T	p.Pro16Ser	p.P16S	ENST00000228682	NM_005269.2	16	Ccc/Tcc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856365	111856365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	67	127	0	ENST00000341259.2:c.416G>A	p.Arg139His	p.R139H	ENST00000341259	NM_005475.2	139	cGc/cAc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856529	111856529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	47	305	2	ENST00000341259.2:c.580G>A	p.Glu194Lys	p.E194K	ENST00000341259	NM_005475.2	194	Gag/Aag																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885484	111885484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	408	632	1	ENST00000341259.2:c.1261C>T	p.Arg421Trp	p.R421W	ENST00000341259	NM_005475.2	421	Cgg/Tgg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112891154	112891154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	268	532	1	ENST00000351677.2:c.488G>A	p.Gly163Asp	p.G163D	ENST00000351677	NM_002834.3	163	gGc/gAc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112893854	112893854	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	216	463	0	ENST00000351677.2:c.743G>A	p.Trp248Ter	p.W248*	ENST00000351677	NM_002834.3	248	tGg/tAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133220026	133220026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	218	563	0	ENST00000320574.5:c.4411C>T	p.Arg1471Cys	p.R1471C	ENST00000320574	NM_006231.2	1471	Cgc/Tgc																																																																														
POLE	5426	MSKCC	GRCh37	12	133244105	133244105	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	117	462	0	ENST00000320574.5:c.2303T>C	p.Phe768Ser	p.F768S	ENST00000320574	NM_006231.2	768	tTc/tCc																																																																														
POLE	5426	MSKCC	GRCh37	12	133252340	133252340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	258	544	0	ENST00000320574.5:c.1087A>G	p.Asn363Asp	p.N363D	ENST00000320574	NM_006231.2	363	Aac/Gac																																																																														
POLE	5426	MSKCC	GRCh37	12	133257725	133257725	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	86	414	0	ENST00000320574.5:c.203C>A	p.Pro68His	p.P68H	ENST00000320574	NM_006231.2	68	cCt/cAt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623788	28623788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	291	541	0	ENST00000241453.7:c.866A>G	p.Asn289Ser	p.N289S	ENST00000241453	NM_004119.2	289	aAc/aGc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28963948	28963948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	305	579	0	ENST00000282397.4:c.1954G>A	p.Glu652Lys	p.E652K	ENST00000282397	NM_002019.4	652	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32905116	32905116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	203	415	0	ENST00000380152.3:c.742G>A	p.Ala248Thr	p.A248T	ENST00000380152		248	Gct/Act																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912807	32912807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	536	857	5	ENST00000380152.3:c.4315G>A	p.Ala1439Thr	p.A1439T	ENST00000380152		1439	Gcc/Acc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913182	32913182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	472	945	0	ENST00000380152.3:c.4690G>A	p.Ala1564Thr	p.A1564T	ENST00000380152		1564	Gca/Aca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913215	32913215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	425	970	1	ENST00000380152.3:c.4723G>T	p.Asp1575Tyr	p.D1575Y	ENST00000380152		1575	Gac/Tac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915232	32915232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	447	895	2	ENST00000380152.3:c.6740G>T	p.Ser2247Ile	p.S2247I	ENST00000380152		2247	aGt/aTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929375	32929375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	393	849	0	ENST00000380152.3:c.7385C>A	p.Ser2462Tyr	p.S2462Y	ENST00000380152		2462	tCc/tAc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41239736	41239736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	331	637	2	ENST00000379561.5:c.614G>A	p.Ser205Asn	p.S205N	ENST00000379561	NM_002015.3	205	aGc/aAc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41239785	41239785	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	313	640	0	ENST00000379561.5:c.565T>C	p.Trp189Arg	p.W189R	ENST00000379561	NM_002015.3	189	Tgg/Cgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48881516	48881516	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	211	492	0	ENST00000267163.4:c.238A>T	p.Lys80Ter	p.K80*	ENST00000267163	NM_000321.2	80	Aaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	187	390	1	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48954342	48954342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	174	337	0	ENST00000267163.4:c.1463C>T	p.Ala488Val	p.A488V	ENST00000267163	NM_000321.2	488	gCg/gTg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515220	103515220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	279	538	0	ENST00000355739.4:c.1721C>A	p.Ala574Asp	p.A574D	ENST00000355739	NM_000123.3	574	gCt/gAt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435130	110435130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	204	382	0	ENST00000375856.3:c.3271C>T	p.Pro1091Ser	p.P1091S	ENST00000375856	NM_003749.2	1091	Ccg/Tcg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435522	110435522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	107	209	1	ENST00000375856.3:c.2879C>T	p.Ser960Leu	p.S960L	ENST00000375856	NM_003749.2	960	tCa/tTa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437478	110437478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	224	438	0	ENST00000375856.3:c.923C>T	p.Ser308Leu	p.S308L	ENST00000375856	NM_003749.2	308	tCg/tTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560364	95560364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	246	504	0	ENST00000343455.3:c.5225A>G	p.Asn1742Ser	p.N1742S	ENST00000343455	NM_177438.2	1742	aAc/aGc																																																																														
AKT1	207	MSKCC	GRCh37	14	105240286	105240286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	187	564	2	ENST00000349310.3:c.665G>A	p.Arg222His	p.R222H	ENST00000349310	NM_001014432.1	222	cGc/cAc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246530	105246530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	103	511	0	ENST00000349310.3:c.70C>T	p.Pro24Ser	p.P24S	ENST00000349310	NM_001014432.1	24	Cca/Tca																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023446	33023446	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	498	900	0	ENST00000300177.4:c.555A>C	p.Ter185TyrextTer29	p.*185Yext*29	ENST00000300177	NM_001191322.1	185	taA/taC																																																																														
MGA	23269	MSKCC	GRCh37	15	42003414	42003414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	409	845	2	ENST00000219905.7:c.2951G>A	p.Arg984His	p.R984H	ENST00000219905	NM_001164273.1	984	cGc/cAc																																																																														
B2M	567	MSKCC	GRCh37	15	45003779	45003779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	115	508	0	ENST00000558401.1:c.35T>C	p.Leu12Pro	p.L12P	ENST00000558401	NM_004048.2	12	cTa/cCa																																																																														
B2M	567	MSKCC	GRCh37	15	45003799	45003799	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	83	459	0	ENST00000558401.1:c.55G>T	p.Glu19Ter	p.E19*	ENST00000558401	NM_004048.2	19	Gag/Tag																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457244	67457244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	48	368	0	ENST00000327367.4:c.218G>A	p.Gly73Asp	p.G73D	ENST00000327367	NM_005902.3	73	gGc/gAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347908	347908	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146189916		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	316	784	1	ENST00000262320.3:c.1598G>A	p.Arg533Gln	p.R533Q	ENST00000262320	NM_003502.3	533	cGa/cAa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2221577	2221577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	308	545	2	ENST00000326181.6:c.446C>T	p.Thr149Met	p.T149M	ENST00000326181	NM_032271.2	149	aCg/aTg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225320	2225320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	40	596	0	ENST00000326181.6:c.1405C>A	p.Leu469Met	p.L469M	ENST00000326181	NM_032271.2	469	Ctg/Atg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779019	3779019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	20	344	0	ENST00000262367.5:c.6029G>A	p.Gly2010Glu	p.G2010E	ENST00000262367	NM_004380.2	2010	gGg/gAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786682	3786682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	432	704	6	ENST00000262367.5:c.4529C>T	p.Ala1510Val	p.A1510V	ENST00000262367	NM_004380.2	1510	gCg/gTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820732	3820732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	343	610	1	ENST00000262367.5:c.2719C>T	p.Pro907Ser	p.P907S	ENST00000262367	NM_004380.2	907	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857200	9857200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	400	781	0	ENST00000330684.3:c.4201C>A	p.Leu1401Ile	p.L1401I	ENST00000330684	NM_001134407.1	1401	Ctt/Att																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641750	23641750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	193	479	0	ENST00000261584.4:c.1725G>A	p.Trp575Ter	p.W575*	ENST00000261584	NM_024675.3	575	tgG/tgA																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646683	23646683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	209	473	0	ENST00000261584.4:c.1184C>A	p.Ser395Tyr	p.S395Y	ENST00000261584	NM_024675.3	395	tCt/tAt																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865888	56865888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	454	786	2	ENST00000308159.5:c.1220C>T	p.Ala407Val	p.A407V	ENST00000308159	NM_014669.4	407	gCg/gTg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56875638	56875638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	73	635	0	ENST00000308159.5:c.2242G>A	p.Val748Met	p.V748M	ENST00000308159	NM_014669.4	748	Gtg/Atg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645489	67645489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	208	396	2	ENST00000264010.4:c.754C>A	p.Pro252Thr	p.P252T	ENST00000264010	NM_006565.3	252	Cca/Aca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828777	72828777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	453	890	0	ENST00000268489.5:c.7804A>G	p.Thr2602Ala	p.T2602A	ENST00000268489	NM_006885.3	2602	Act/Gct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828915	72828915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	487	896	2	ENST00000268489.5:c.7666G>A	p.Ala2556Thr	p.A2556T	ENST00000268489	NM_006885.3	2556	Gcg/Acg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829200	72829200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	333	919	2	ENST00000268489.5:c.7381G>A	p.Glu2461Lys	p.E2461K	ENST00000268489	NM_006885.3	2461	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819752	81819752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	412	716	0	ENST00000359376.3:c.158C>T	p.Ala53Val	p.A53V	ENST00000359376	NM_002661.3	53	gCc/gTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81991597	81991597	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	76	834	0	ENST00000359376.3:c.3792C>A	p.Tyr1264Ter	p.Y1264*	ENST00000359376	NM_002661.3	1264	taC/taA																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347863	89347863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	293	725	0	ENST00000301030.4:c.5087A>G	p.Asp1696Gly	p.D1696G	ENST00000301030	NM_001256183.1	1696	gAc/gGc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348610	89348610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	297	973	2	ENST00000301030.4:c.4340C>A	p.Pro1447His	p.P1447H	ENST00000301030	NM_001256183.1	1447	cCt/cAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357447	89357447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	292	708	2	ENST00000301030.4:c.371C>T	p.Thr124Met	p.T124M	ENST00000301030	NM_001256183.1	124	aCg/aTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89807231	89807231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	376	653	0	ENST00000389301.3:c.3809C>T	p.Ser1270Leu	p.S1270L	ENST00000389301	NM_000135.2	1270	tCg/tTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89809275	89809275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139743053		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	351	621	3	ENST00000389301.3:c.3698C>T	p.Ala1233Val	p.A1233V	ENST00000389301	NM_000135.2	1233	gCg/gTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836633	89836633	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	271	540	0	ENST00000389301.3:c.2257A>G	p.Met753Val	p.M753V	ENST00000389301	NM_000135.2	753	Atg/Gtg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89839685	89839685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	277	594	1	ENST00000389301.3:c.2008C>T	p.Arg670Cys	p.R670C	ENST00000389301	NM_000135.2	670	Cgt/Tgt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89851371	89851371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	117	430	0	ENST00000389301.3:c.1361C>T	p.Ala454Val	p.A454V	ENST00000389301	NM_000135.2	454	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	213	436	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	212	496	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579400	7579400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	109	476	0	ENST00000269305.4:c.287C>A	p.Ser96Tyr	p.S96Y	ENST00000269305	NM_001126112.2	96	tCt/tAt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980034	7980034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	306	527	0	ENST00000319144.4:c.1303G>A	p.Val435Ile	p.V435I	ENST00000319144	NM_001139.2	435	Gtc/Atc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15964969	15964969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	276	618	0	ENST00000268712.3:c.5627G>T	p.Arg1876Ile	p.R1876I	ENST00000268712	NM_006311.3	1876	aGa/aTa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968823	15968823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	163	506	0	ENST00000268712.3:c.4927G>A	p.Gly1643Ser	p.G1643S	ENST00000268712	NM_006311.3	1643	Ggt/Agt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974781	15974781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	50	525	0	ENST00000268712.3:c.4094G>A	p.Arg1365Gln	p.R1365Q	ENST00000268712	NM_006311.3	1365	cGg/cAg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004727	16004727	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	303	648	0	ENST00000268712.3:c.2527G>T	p.Glu843Ter	p.E843*	ENST00000268712	NM_006311.3	843	Gaa/Taa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131282	17131282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	316	592	0	ENST00000285071.4:c.170G>A	p.Arg57Gln	p.R57Q	ENST00000285071	NM_144997.5	57	cGg/cAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29541468	29541468	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	16	131	0	ENST00000358273.4:c.1393-1G>A		p.X465_splice	ENST00000358273	NM_001042492.2	465																																																																															
NF1	4763	MSKCC	GRCh37	17	29653140	29653140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	261	415	0	ENST00000358273.4:c.5138G>A	p.Gly1713Glu	p.G1713E	ENST00000358273	NM_001042492.2	1713	gGg/gAg																																																																														
RARA	5914	MSKCC	GRCh37	17	38511667	38511667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	220	478	2	ENST00000254066.5:c.1165G>A	p.Ala389Thr	p.A389T	ENST00000254066	NM_000964.3	389	Gcc/Acc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245300	41245300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	266	486	1	ENST00000357654.3:c.2248C>A	p.Leu750Ile	p.L750I	ENST00000357654	NM_007294.3	750	Ctc/Atc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696419	47696419	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	45	511	0	ENST00000347630.2:c.404A>C	p.Lys135Thr	p.K135T	ENST00000347630	NM_001007230.1	135	aAa/aCa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437609	56437609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	41	431	0	ENST00000407977.2:c.853C>A	p.Leu285Ile	p.L285I	ENST00000407977		285	Cta/Ata																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58711228	58711228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	376	639	0	ENST00000305921.3:c.716C>A	p.Ser239Tyr	p.S239Y	ENST00000305921	NM_003620.3	239	tCt/tAt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59924463	59924463	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	221	508	0	ENST00000259008.2:c.626A>G	p.Lys209Arg	p.K209R	ENST00000259008	NM_032043.2	209	aAa/aGa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59934512	59934512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	387	656	0	ENST00000259008.2:c.286A>G	p.Thr96Ala	p.T96A	ENST00000259008	NM_032043.2	96	Aca/Gca																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59937169	59937169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	277	506	0	ENST00000259008.2:c.193C>G	p.Gln65Glu	p.Q65E	ENST00000259008	NM_032043.2	65	Caa/Gaa																																																																														
CD79B	974	MSKCC	GRCh37	17	62006627	62006627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1063625		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	259	581	0	ENST00000392795.3:c.652G>A	p.Glu218Lys	p.E218K	ENST00000392795	NM_001039933.1	218	Gaa/Aaa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533760	63533760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	230	470	1	ENST00000307078.5:c.1394G>A	p.Arg465His	p.R465H	ENST00000307078	NM_004655.3	465	cGc/cAc																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66511551	66511551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	154	248	0	ENST00000358598.2:c.11G>A	p.Gly4Asp	p.G4D	ENST00000358598	NM_212471.2	4	gGc/gAc																																																																														
YES1	7525	MSKCC	GRCh37	18	724456	724456	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	213	520	0	ENST00000314574.4:c.1600G>T	p.Glu534Ter	p.E534*	ENST00000314574	NM_005433.3	534	Gag/Tag																																																																														
MALT1	10892	MSKCC	GRCh37	18	56400748	56400748	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	399	802	1	ENST00000348428.3:c.1342T>G	p.Leu448Val	p.L448V	ENST00000348428	NM_006785.3	448	Ttg/Gtg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216994	2216994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	310	557	1	ENST00000398665.3:c.2449C>T	p.Pro817Ser	p.P817S	ENST00000398665	NM_032482.2	817	Ccc/Tcc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223431	2223431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	253	469	0	ENST00000398665.3:c.3542C>T	p.Ser1181Phe	p.S1181F	ENST00000398665	NM_032482.2	1181	tCc/tTc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110203	3110203	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147528229		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	276	595	0	ENST00000078429.4:c.193G>A	p.Ala65Thr	p.A65T	ENST00000078429	NM_002067.2	65	Gcc/Acc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117445	4117445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	65	293	0	ENST00000262948.5:c.275G>T	p.Arg92Ile	p.R92I	ENST00000262948	NM_030662.3	92	aGa/aTa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4123817	4123817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	269	406	2	ENST00000262948.5:c.56C>T	p.Ala19Val	p.A19V	ENST00000262948	NM_030662.3	19	gCc/gTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215601	5215601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	87	417	0	ENST00000357368.4:c.4102C>T	p.Leu1368Phe	p.L1368F	ENST00000357368	NM_002850.3	1368	Ctt/Ttt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221131	5221131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201447856		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	34	586	1	ENST00000357368.4:c.3335C>T	p.Thr1112Met	p.T1112M	ENST00000357368	NM_002850.3	1112	aCg/aTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7141827	7141827	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	123	473	2	ENST00000302850.5:c.2543C>T	p.Ala848Val	p.A848V	ENST00000302850	NM_000208.2	848	gCc/gTc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10249230	10249230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	209	538	0	ENST00000340748.4:c.3952G>A	p.Ala1318Thr	p.A1318T	ENST00000340748		1318	Gcg/Acg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10259684	10259684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	213	393	0	ENST00000340748.4:c.2548G>T	p.Asp850Tyr	p.D850Y	ENST00000340748		850	Gat/Tat																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10260191	10260191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	48	531	0	ENST00000340748.4:c.2476T>C	p.Ser826Pro	p.S826P	ENST00000340748		826	Tca/Cca																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094867	11094867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	149	607	0	ENST00000344626.4:c.40C>T	p.Pro14Ser	p.P14S	ENST00000344626	NM_003072.3	14	Cca/Tca																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098566	11098566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	284	571	3	ENST00000344626.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000344626	NM_003072.3	362	Gac/Aac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11101970	11101970	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	248	520	1	ENST00000344626.4:c.1390C>T	p.Gln464Ter	p.Q464*	ENST00000344626	NM_003072.3	464	Cag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121068	11121068	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	57	732	0	ENST00000344626.4:c.2135A>G	p.Gln712Arg	p.Q712R	ENST00000344626	NM_003072.3	712	cAa/cGa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11168978	11168978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	259	598	0	ENST00000344626.4:c.4472G>A	p.Arg1491Gln	p.R1491Q	ENST00000344626	NM_003072.3	1491	cGa/cAa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15273295	15273295	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	244	558	0	ENST00000263388.2:c.5894A>C	p.Lys1965Thr	p.K1965T	ENST00000263388	NM_000435.2	1965	aAg/aCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276687	15276687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	249	601	2	ENST00000263388.2:c.5578G>A	p.Asp1860Asn	p.D1860N	ENST00000263388	NM_000435.2	1860	Gat/Aat																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299969	15299969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	43	560	0	ENST00000263388.2:c.1209G>T	p.Glu403Asp	p.E403D	ENST00000263388	NM_000435.2	403	gaG/gaT																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366309	15366309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	196	516	1	ENST00000263377.2:c.1846C>T	p.Arg616Trp	p.R616W	ENST00000263377	NM_058243.2	616	Cgg/Tgg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952321	17952321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	238	494	1	ENST00000458235.1:c.1019C>T	p.Ser340Leu	p.S340L	ENST00000458235	NM_000215.3	340	tCg/tTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955187	17955187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	294	620	2	ENST00000458235.1:c.40C>T	p.Arg14Cys	p.R14C	ENST00000458235	NM_000215.3	14	Cgt/Tgt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273283	18273283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	56	602	2	ENST00000222254.8:c.1076G>A	p.Ser359Asn	p.S359N	ENST00000222254	NM_005027.3	359	aGc/aAc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257967	19257967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	48	572	0	ENST00000162023.5:c.419C>A	p.Pro140Gln	p.P140Q	ENST00000162023		140	cCa/cAa																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308069	30308069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	301	470	1	ENST00000262643.3:c.206C>T	p.Ala69Val	p.A69V	ENST00000262643	NM_001238.2	69	gCa/gTa																																																																														
AXL	558	MSKCC	GRCh37	19	41727935	41727935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	258	526	0	ENST00000301178.4:c.560G>A	p.Gly187Asp	p.G187D	ENST00000301178	NM_021913.4	187	gGc/gAc																																																																														
AXL	558	MSKCC	GRCh37	19	41737100	41737100	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	301	601	0	ENST00000301178.4:c.680A>C	p.Gln227Pro	p.Q227P	ENST00000301178	NM_021913.4	227	cAg/cCg																																																																														
CIC	23152	MSKCC	GRCh37	19	42793393	42793393	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	77	351	1	ENST00000575354.2:c.1195G>T	p.Gly399Ter	p.G399*	ENST00000575354	NM_015125.3	399	Gga/Tga																																																																														
CIC	23152	MSKCC	GRCh37	19	42795033	42795033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	295	529	0	ENST00000575354.2:c.2113G>A	p.Ala705Thr	p.A705T	ENST00000575354	NM_015125.3	705	Gca/Aca																																																																														
CIC	23152	MSKCC	GRCh37	19	42797266	42797266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	183	443	0	ENST00000575354.2:c.3628C>A	p.Pro1210Thr	p.P1210T	ENST00000575354	NM_015125.3	1210	Cct/Act																																																																														
CIC	23152	MSKCC	GRCh37	19	42798364	42798364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	266	539	1	ENST00000575354.2:c.4235G>A	p.Arg1412His	p.R1412H	ENST00000575354	NM_015125.3	1412	cGc/cAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42798990	42798990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	60	506	0	ENST00000575354.2:c.4474G>A	p.Ala1492Thr	p.A1492T	ENST00000575354	NM_015125.3	1492	Gcc/Acc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872188	45872188	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	293	524	0	ENST00000391945.4:c.246G>T	p.Lys82Asn	p.K82N	ENST00000391945	NM_000400.3	82	aaG/aaT																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906383	50906383	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	440	641	0	ENST00000440232.2:c.1044G>T	p.Glu348Asp	p.E348D	ENST00000440232	NM_002691.3	348	gaG/gaT																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918105	50918105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	142	693	2	ENST00000440232.2:c.2422C>T	p.Arg808Cys	p.R808C	ENST00000440232	NM_002691.3	808	Cgc/Tgc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714597	52714597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	226	635	0	ENST00000322088.6:c.355C>T	p.His119Tyr	p.H119Y	ENST00000322088	NM_014225.5	119	Cac/Tac																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520162	9520162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	308	520	0	ENST00000353224.5:c.2107G>A	p.Ala703Thr	p.A703T	ENST00000353224	NM_177990.2	703	Gca/Aca																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30954254	30954254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	54	576	1	ENST00000375687.4:c.125G>A	p.Gly42Glu	p.G42E	ENST00000375687	NM_015338.5	42	gGa/gAa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023949	31023949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	257	575	0	ENST00000375687.4:c.3434G>A	p.Gly1145Asp	p.G1145D	ENST00000375687	NM_015338.5	1145	gGc/gAc																																																																														
SRC	6714	MSKCC	GRCh37	20	36030050	36030050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	253	553	2	ENST00000358208.4:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000358208		362	cGg/cAg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39746809	39746809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	149	349	1	ENST00000361337.2:c.1823C>T	p.Pro608Leu	p.P608L	ENST00000361337	NM_003286.2	608	cCg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419951	41419951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	59	620	1	ENST00000373198.4:c.370G>A	p.Val124Met	p.V124M	ENST00000373198	NM_133170.3	124	Gtg/Atg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420025	41420025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	270	623	0	ENST00000373198.4:c.296A>G	p.Asp99Gly	p.D99G	ENST00000373198	NM_133170.3	99	gAc/gGc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264640	46264640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	101	579	2	ENST00000371998.3:c.1510C>T	p.His504Tyr	p.H504Y	ENST00000371998		504	Cac/Tac																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46266528	46266528	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	37	592	1	ENST00000371998.3:c.2512+1G>A		p.X838_splice	ENST00000371998		838																																																																															
NCOA3	8202	MSKCC	GRCh37	20	46268465	46268465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	353	811	0	ENST00000371998.3:c.2852G>T	p.Arg951Ile	p.R951I	ENST00000371998		951	aGa/aTa																																																																														
AURKA	6790	MSKCC	GRCh37	20	54948603	54948603	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	178	367	0	ENST00000312783.6:c.715G>T	p.Glu239Ter	p.E239*	ENST00000312783	NM_198436.1	239	Gaa/Taa																																																																														
AURKA	6790	MSKCC	GRCh37	20	54958084	54958084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	101	421	0	ENST00000312783.6:c.523G>A	p.Glu175Lys	p.E175K	ENST00000312783	NM_198436.1	175	Gag/Aag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	258	434	0	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164781	36164781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	44	630	0	ENST00000300305.3:c.1094G>T	p.Gly365Val	p.G365V	ENST00000300305		365	gGc/gTc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42839812	42839812	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	188	334	0	ENST00000398585.3:c.1427G>A	p.Gly476Asp	p.G476D	ENST00000398585	NM_001135099.1	476	gGt/gAt																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866328	42866328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150389990		P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	32	367	2	ENST00000398585.3:c.304G>A	p.Val102Ile	p.V102I	ENST00000398585	NM_001135099.1	102	Gtc/Atc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44520566	44520566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	308	445	1	ENST00000291552.4:c.196C>T	p.Arg66Cys	p.R66C	ENST00000291552	NM_006758.2	66	Cgc/Tgc																																																																														
NF2	4771	MSKCC	GRCh37	22	30064376	30064376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	345	668	0	ENST00000338641.4:c.940G>A	p.Asp314Asn	p.D314N	ENST00000338641	NM_000268.3	314	Gat/Aat																																																																														
EP300	2033	MSKCC	GRCh37	22	41547987	41547987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	167	659	1	ENST00000263253.7:c.2968G>A	p.Ala990Thr	p.A990T	ENST00000263253	NM_001429.3	990	Gca/Aca																																																																														
EP300	2033	MSKCC	GRCh37	22	41572256	41572256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	237	376	0	ENST00000263253.7:c.4785C>A	p.Phe1595Leu	p.F1595L	ENST00000263253	NM_001429.3	1595	ttC/ttA																																																																														
EP300	2033	MSKCC	GRCh37	22	41574502	41574502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	231	546	1	ENST00000263253.7:c.6787C>T	p.Arg2263Ter	p.R2263*	ENST00000263253	NM_001429.3	2263	Cga/Tga																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1331455	1331455	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	179	660	0	ENST00000381566.1:c.73G>T	p.Gly25Ter	p.G25*	ENST00000381566		25	Gga/Tga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938543	44938543	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	57	285	0	ENST00000377967.4:c.3091A>G	p.Thr1031Ala	p.T1031A	ENST00000377967	NM_021140.2	1031	Aca/Gca																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045463	47045463	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	91	274	1	ENST00000329236.7:c.2197-1G>T		p.X733_splice	ENST00000329236	NM_001204466.1	733																																																																															
ARAF	369	MSKCC	GRCh37	X	47424197	47424197	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	287	285	0	ENST00000377045.4:c.202C>T	p.Arg68Ter	p.R68*	ENST00000377045	NM_001654.4	68	Cga/Tga																																																																														
ARAF	369	MSKCC	GRCh37	X	47430276	47430276	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	51	383	0	ENST00000377045.4:c.1552-1G>T		p.X518_splice	ENST00000377045	NM_001654.4	518																																																																															
GATA1	2623	MSKCC	GRCh37	X	48651642	48651642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	343	379	1	ENST00000376670.3:c.808C>T	p.Arg270Trp	p.R270W	ENST00000376670	NM_002049.3	270	Cgg/Tgg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245265	53245265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	61	360	1	ENST00000375401.3:c.772C>T	p.Arg258Trp	p.R258W	ENST00000375401	NM_004187.3	258	Cgg/Tgg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246450	53246450	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	48	312	0	ENST00000375401.3:c.532A>G	p.Thr178Ala	p.T178A	ENST00000375401	NM_004187.3	178	Aca/Gca																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409822	63409822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	102	356	0	ENST00000330258.3:c.3345G>T	p.Glu1115Asp	p.E1115D	ENST00000330258	NM_152424.3	1115	gaG/gaT																																																																														
AR	367	MSKCC	GRCh37	X	66765579	66765579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	103	397	0	ENST00000374690.3:c.591G>T	p.Gln197His	p.Q197H	ENST00000374690	NM_000044.3	197	caG/caT																																																																														
MED12	9968	MSKCC	GRCh37	X	70356811	70356811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	89	379	0	ENST00000374080.3:c.5483C>T	p.Ser1828Phe	p.S1828F	ENST00000374080		1828	tCt/tTt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123181221	123181221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	183	347	0	ENST00000218089.9:c.685G>A	p.Ala229Thr	p.A229T	ENST00000218089	NM_001042749.1	229	Gct/Act																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197867	123197867	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	656	335	0	ENST00000218089.9:c.1991A>C	p.Lys664Thr	p.K664T	ENST00000218089	NM_001042749.1	664	aAa/aCa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123211868	123211868	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	638	390	1	ENST00000218089.9:c.2735A>C	p.Lys912Thr	p.K912T	ENST00000218089	NM_001042749.1	912	aAa/aCa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39647436	39647437	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	247	563	0	ENST00000262039.4:c.2613dup	p.Ala872CysfsTer77	p.A872Cfs*77	ENST00000262039	NM_002647.2	870	ctt/cTtt																																																																														
KIT	3815	MSKCC	GRCh37	4	55603379	55603380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	282	640	0	ENST00000288135.5:c.2740dup	p.Arg914LysfsTer12	p.R914Kfs*12	ENST00000288135	NM_000222.2	912	cta/ctAa																																																																														
ATR	545	MSKCC	GRCh37	3	142185232	142185232	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	341	607	0	ENST00000350721.4:c.6831del	p.His2277GlnfsTer38	p.H2277Qfs*38	ENST00000350721	NM_001184.3	2277	caT/ca																																																																														
NBN	4683	MSKCC	GRCh37	8	90965660	90965660	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	264	537	0	ENST00000265433.3:c.1657del	p.Met553TrpfsTer6	p.M553Wfs*6	ENST00000265433	NM_002485.4	553	Atg/tg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	59	240	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	252	463	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	278	420	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	316	580	2	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610380	10610380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	339	509	1	ENST00000171111.5:c.330G>T	p.Met110Ile	p.M110I	ENST00000171111	NM_203500.1	110	atG/atT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458746	120458746	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	96	463	0	ENST00000256646.2:c.6599C>G	p.Ser2200Cys	p.S2200C	ENST00000256646	NM_024408.3	2200	tCt/tGt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436887	52436887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	48	377	0	ENST00000460680.1:c.1891G>C	p.Glu631Gln	p.E631Q	ENST00000460680	NM_004656.3	631	Gag/Cag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670760	134670760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	115	407	0	ENST00000398015.3:c.671C>A	p.Thr224Lys	p.T224K	ENST00000398015	NM_004441.4	224	aCa/aAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612221	189612221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	286	407	0	ENST00000264731.3:c.1973G>A	p.Trp658Ter	p.W658*	ENST00000264731	NM_003722.4	658	tGg/tAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38953574	38953574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	165	354	0	ENST00000357387.3:c.2779C>G	p.Leu927Val	p.L927V	ENST00000357387	NM_152756.3	927	Ctt/Gtt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151917617	151917617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	40	290	0	ENST00000262189.6:c.3703G>A	p.Asp1235Asn	p.D1235N	ENST00000262189	NM_170606.2	1235	Gat/Aat																																																																														
MYC	4609	MSKCC	GRCh37	8	128752935	128752935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	94	409	0	ENST00000377970.2:c.1096G>A	p.Glu366Lys	p.E366K	ENST00000377970	NM_002467.4	366	Gag/Aag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114159	115114159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	173	633	0	ENST00000257566.3:c.1058C>T	p.Ser353Phe	p.S353F	ENST00000257566	NM_016569.3	353	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578456	7578482	+	inframe_deletion	In_Frame_Del	DEL	GCGGACGCGGGTGCCGGGCGGGGGTGT	GCGGACGCGGGTGCCGGGCGGGGGTGT	-			P-0007051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	312	491	0	ENST00000269305.4:c.448_474del	p.Thr150_Arg158del	p.T150_R158del	ENST00000269305	NM_001126112.2	150	ACACCCCCGCCCGGCACCCGCGTCCGC/-																																																																														
KIT	3815	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	142	397	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46298725	46298725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	42	391	0	ENST00000334344.6:c.5372A>G	p.Lys1791Arg	p.K1791R	ENST00000334344	NM_152641.2	1791	aAg/aGg																																																																														
KIT	3815	MSKCC	GRCh37	4	55604632	55604633	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0008865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	424	426	0	ENST00000288135.5:c.2841_2842del	p.Lys948AlafsTer100	p.K948Afs*100	ENST00000288135	NM_000222.2	947	cAG/c																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0011308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	1523	350	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495360	149495360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114435947		P-0011308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	58	283	0	ENST00000261799.4:c.3287C>T	p.Ala1096Val	p.A1096V	ENST00000261799	NM_002609.3	1096	gCg/gTg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347943	73347943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	53	247	0	ENST00000377767.4:c.1118T>C	p.Phe373Ser	p.F373S	ENST00000377767	NM_014953.3	373	tTt/tCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578470	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GGG			P-0011308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	128	347	0	ENST00000269305.4:c.460_461insCCC	p.Gly154delinsAlaArg	p.G154delinsAR	ENST00000269305	NM_001126112.2	154	ggc/gCCCgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GCACAC			P-0012196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	23	513	0	ENST00000275493.2:c.2308_2309insGCACAC	p.Asp770delinsGlyThrHis	p.D770delinsGTH	ENST00000275493	NM_005228.3	770	gac/gGCACACac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	187	296	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TERT	7015	MSKCC	GRCh37	5	1294665	1294665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	32	102	0	ENST00000310581.5:c.336del	p.Glu113ArgfsTer15	p.E113Rfs*15	ENST00000310581	NM_198253.2	112	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	170	642	0	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742463	17742463	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	145	624	1	ENST00000250003.3:c.650delC	p.Pro217ArgfsTer33	p.P217Rfs*33	ENST00000250003	NM_002478.4	215	ggC/gg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964077	28964077	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	150	550	0	ENST00000282397.4:c.1825del	p.Met609TrpfsTer16	p.M609Wfs*16	ENST00000282397	NM_002019.4	609	Atg/tg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	152	422	2	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100998	41100998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	142	417	1	ENST00000373198.4:c.1358G>A	p.Arg453His	p.R453H	ENST00000373198	NM_133170.3	453	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112176206	112176206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	134	502	1	ENST00000257430.4:c.4915C>T	p.Pro1639Ser	p.P1639S	ENST00000257430	NM_000038.5	1639	Cca/Tca																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149516594	149516594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150173975		P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	203	546	1	ENST00000261799.4:c.17C>T	p.Ala6Val	p.A6V	ENST00000261799	NM_002609.3	6	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101690	27101690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	133	446	2	ENST00000324856.7:c.4972C>T	p.Arg1658Trp	p.R1658W	ENST00000324856	NM_006015.4	1658	Cgg/Tgg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99203983	99203983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	107	406	0	ENST00000074304.5:c.2846G>A	p.Arg949His	p.R949H	ENST00000074304	NM_001134224.1	949	cGc/cAc																																																																														
TP63	8626	MSKCC	GRCh37	3	189587119	189587119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	163	400	1	ENST00000264731.3:c.1136G>A	p.Arg379His	p.R379H	ENST00000264731	NM_003722.4	379	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332496	153332496	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138477494		P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	176	608	0	ENST00000281708.4:c.460G>A	p.Val154Ile	p.V154I	ENST00000281708	NM_033632.3	154	Gtt/Att																																																																														
APC	324	MSKCC	GRCh37	5	112179453	112179453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	198	659	0	ENST00000257430.4:c.8162G>A	p.Arg2721His	p.R2721H	ENST00000257430	NM_000038.5	2721	cGc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55240806	55240806	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	80	332	0	ENST00000275493.2:c.2050C>T	p.Gln684Ter	p.Q684*	ENST00000275493	NM_005228.3	684	Cag/Tag																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287297	38287297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	178	630	0	ENST00000425967.3:c.360G>T	p.Glu120Asp	p.E120D	ENST00000425967	NM_001174067.1	120	gaG/gaT																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123324952	123324952	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	152	556	0	ENST00000358487.5:c.376G>T	p.Asp126Tyr	p.D126Y	ENST00000358487	NM_000141.4	126	Gat/Tat																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94211942	94211942	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	129	435	0	ENST00000323929.3:c.503T>C	p.Leu168Ser	p.L168S	ENST00000323929	NM_005591.3	168	tTg/tCg																																																																														
ATM	472	MSKCC	GRCh37	11	108224507	108224507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	116	371	0	ENST00000278616.4:c.8686C>T	p.Gln2896Ter	p.Q2896*	ENST00000278616	NM_000051.3	2896	Cag/Tag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570038	95570038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	56	498	0	ENST00000343455.3:c.3695G>C	p.Ser1232Thr	p.S1232T	ENST00000343455	NM_177438.2	1232	aGc/aCc																																																																														
MGA	23269	MSKCC	GRCh37	15	42040904	42040904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	211	711	0	ENST00000219905.7:c.5282G>A	p.Arg1761Gln	p.R1761Q	ENST00000219905	NM_001164273.1	1761	cGa/cAa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2126085	2126085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	199	709	1	ENST00000219476.3:c.2656G>A	p.Val886Met	p.V886M	ENST00000219476	NM_000548.3	886	Gtg/Atg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89816139	89816139	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	159	580	0	ENST00000389301.3:c.3238C>T	p.Arg1080Trp	p.R1080W	ENST00000389301	NM_000135.2	1080	Cgg/Tgg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89857923	89857923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	134	405	2	ENST00000389301.3:c.1247C>T	p.Ala416Val	p.A416V	ENST00000389301	NM_000135.2	416	gCc/gTc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11984839	11984839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	105	258	0	ENST00000353533.5:c.385G>A	p.Ala129Thr	p.A129T	ENST00000353533	NM_003010.3	129	Gca/Aca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298797	15298797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	144	417	0	ENST00000263388.2:c.1501G>A	p.Gly501Ser	p.G501S	ENST00000263388	NM_000435.2	501	Ggc/Agc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299827	15299827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	175	489	0	ENST00000263388.2:c.1351G>T	p.Gly451Cys	p.G451C	ENST00000263388	NM_000435.2	451	Ggc/Tgc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942128	17942128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	143	481	1	ENST00000458235.1:c.2887G>A	p.Val963Ile	p.V963I	ENST00000458235	NM_000215.3	963	Gtc/Atc																																																																														
AXL	558	MSKCC	GRCh37	19	41762385	41762385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	61	596	1	ENST00000301178.4:c.2065G>A	p.Ala689Thr	p.A689T	ENST00000301178	NM_021913.4	689	Gcg/Acg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918548	44918548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	204	616	0	ENST00000377967.4:c.1031C>T	p.Ala344Val	p.A344V	ENST00000377967	NM_021140.2	344	gCt/gTt																																																																														
ARAF	369	MSKCC	GRCh37	X	47428212	47428212	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	211	680	0	ENST00000377045.4:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000377045	NM_001654.4	391	tAc/tGc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	T	T	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	145	550	0	ENST00000342788.4:c.1delA	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686961	37686962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	158	516	0	ENST00000447079.4:c.3871dup	p.Gln1291ProfsTer19	p.Q1291Pfs*19	ENST00000447079	NM_015083.1	1289	gcc/gCcc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907261	32907263	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	121	431	0	ENST00000380152.3:c.1650_1652del	p.Glu550del	p.E550del	ENST00000380152		549	aAGGag/aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524589	187524589	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	144	372	0	ENST00000441802.2:c.11091del	p.Phe3697LeufsTer2	p.F3697Lfs*2	ENST00000441802	NM_005245.3	3697	ttT/tt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11924269	11924269	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	28	92	0	ENST00000353533.5:c.69del	p.Val24Ter	p.V24*	ENST00000353533	NM_003010.3	22	ggC/gg																																																																														
KIT	3815	MSKCC	GRCh37	4	55561901	55561901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	113	381	0	ENST00000288135.5:c.291del	p.Cys97Ter	p.C97*	ENST00000288135	NM_000222.2	97	tgC/tg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16265339	16265341	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0012249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	147	577	0	ENST00000375759.3:c.10835_10837del	p.Ile3612del	p.I3612del	ENST00000375759	NM_015001.2	3611	ATC/-																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0012406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	24	494	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376124	118376124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	74	510	0	ENST00000534358.1:c.9517C>T	p.Gln3173Ter	p.Q3173*	ENST00000534358	NM_005933.3	3173	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579359	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TTT			P-0012406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	77	566	0	ENST00000269305.4:c.328_329insAAA	p.Arg110delinsGlnSer	p.R110delinsQS	ENST00000269305	NM_001126112.2	110	cgt/cAAAgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0013110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1967	68	1122	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0013110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	274	466	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593607	55593608	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TCC			P-0013110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	812	679	0	ENST00000288135.5:c.1673_1674insTCC	p.Lys558delinsAsnPro	p.K558delinsNP	ENST00000288135	NM_000222.2	558	aag/aaTCCg																																																																														
KIT	3815	MSKCC	GRCh37	4	55595539	55595539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1302	75	668	1	ENST00000288135.5:c.2029G>A	p.Asp677Asn	p.D677N	ENST00000288135	NM_000222.2	677	Gat/Aat																																																																														
KIT	3815	MSKCC	GRCh37	4	55599299	55599299	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	117	549	0	ENST00000288135.5:c.2425T>G	p.Cys809Gly	p.C809G	ENST00000288135	NM_000222.2	809	Tgt/Ggt																																																																														
KIT	3815	MSKCC	GRCh37	4	55599334	55599337	+	protein_altering_variant	In_Frame_Del	DEL	TTCT	TTCT	G			P-0013110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	141	505	0	ENST00000288135.5:c.2460_2463delinsG	p.Asp820_Ser821delinsGlu	p.D820_S821delinsE	ENST00000288135	NM_000222.2	820	gaTTCT/gaG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0013342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	137	575	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	99	421	1	ENST00000275493.2:c.2500G>T	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ttg																																																																														
KIT	3815	MSKCC	GRCh37	4	55575597	55575606	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGAACTTC	AGTGAACTTC	-			P-0013342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	100	567	0	ENST00000288135.5:c.1124_1133del	p.Ser375IlefsTer2	p.S375Ifs*2	ENST00000288135	NM_000222.2	375	AGTGAACTTCat/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	304	590	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029437	16029439	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0017812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	93	493	1	ENST00000268712.3:c.1591_1593delGAA	p.Glu531del	p.E531del	ENST00000268712	NM_006311.3	531	GAA/-																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964333	70964333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	89	357	0	ENST00000276594.2:c.1695G>A	p.Met565Ile	p.M565I	ENST00000276594	NM_024504.3	565	atG/atA																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598812	28598812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	162	663	0	ENST00000253063.3:c.372G>C	p.Gln124His	p.Q124H	ENST00000253063	NM_031459.4	124	caG/caC																																																																														
SLX4	84464	MSKCC	GRCh37	16	3644561	3644561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	115	846	0	ENST00000294008.3:c.2053G>C	p.Val685Leu	p.V685L	ENST00000294008	NM_032444.2	685	Gtc/Ctc																																																																														
KIT	3815	MSKCC	GRCh37	4	55589840	55589841	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0017812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	69	436	0	ENST00000288135.5:c.1326_1327dup	p.Cys443PhefsTer21	p.C443Ffs*21	ENST00000288135	NM_000222.2	441	tat/taTTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	160	460	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	160	460	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	193	704	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	160	460	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579384	7579387	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0024793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	121	806	0	ENST00000269305.4:c.300_303del	p.Lys101ProfsTer21	p.K101Pfs*21	ENST00000269305	NM_001126112.2	100	caGAAA/ca																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281940	39281940	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	75	377	0	ENST00000402219.2:c.535G>C	p.Asp179His	p.D179H	ENST00000402219	NM_005633.3	179	Gat/Cat																																																																														
KIT	3815	MSKCC	GRCh37	4	55561789	55561793	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCG	ATCCG	TTA			P-0024793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	88	441	1	ENST00000288135.5:c.179_183delinsTTA	p.Asp60ValfsTer9	p.D60Vfs*9	ENST00000288135	NM_000222.2	60	gATCCG/gTTA																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	75	330	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	180	404	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	79	339	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	106	495	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135785964	135785964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs118203506		P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	80	369	1	ENST00000298552.3:c.1257del	p.Arg420GlyfsTer20	p.R420Gfs*20	ENST00000298552	NM_001162426.1	419	ccC/cc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591115	67591116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	71	282	0	ENST00000274335.5:c.1710dupT	p.Ile571TyrfsTer31	p.I571Yfs*31	ENST00000274335		570	ctt/cTtt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	149	316	0	ENST00000371953.3:c.275A>T	p.Asp92Val	p.D92V	ENST00000371953	NM_000314.4	92	gAc/gTc																																																																														
CBL	867	MSKCC	GRCh37	11	119156070	119156070	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	37	447	0	ENST00000264033.4:c.1739del	p.Pro580LeufsTer35	p.P580Lfs*35	ENST00000264033	NM_005188.3	579	Ccc/cc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19261495	19261495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	111	449	1	ENST00000162023.5:c.50G>A	p.Arg17Gln	p.R17Q	ENST00000162023		17	cGg/cAg																																																																														
ATR	545	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	88	501	3	ENST00000350721.4:c.5440delA	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919915	50919915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	101	368	0	ENST00000440232.2:c.3002G>A	p.Gly1001Asp	p.G1001D	ENST00000440232	NM_002691.3	1001	gGc/gAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	78	377	1	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121435289	121435289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	91	362	0	ENST00000257555.6:c.1322C>T	p.Thr441Met	p.T441M	ENST00000257555		441	aCg/aTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	26	261	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096313	2096313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	107	481	0	ENST00000219066.1:c.194G>A	p.Arg65His	p.R65H	ENST00000219066	NM_002528.5	65	cGt/cAt																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2491381	2491381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	38	440	2	ENST00000355716.4:c.424G>A	p.Ala142Thr	p.A142T	ENST00000355716	NM_003820.2	142	Gcc/Acc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115268950	115268950	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	52	440	3	ENST00000438362.2:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000438362	NM_001242891.1	554	Cga/Tga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193119452	193119452	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	82	347	0	ENST00000367435.3:c.847A>C	p.Lys283Gln	p.K283Q	ENST00000367435	NM_024529.4	283	Aaa/Caa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392125	118392125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	63	304	0	ENST00000534358.1:c.11636A>G	p.Asp3879Gly	p.D3879G	ENST00000534358	NM_005933.3	3879	gAc/gGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426832	49426832	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	88	331	0	ENST00000301067.7:c.11656C>T	p.Gln3886Ter	p.Q3886*	ENST00000301067	NM_003482.3	3886	Cag/Tag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337737	73337737	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	24	215	0	ENST00000377767.4:c.1979A>C	p.Asn660Thr	p.N660T	ENST00000377767	NM_014953.3	660	aAt/aCt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129130	2129130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	141	486	0	ENST00000219476.3:c.3064C>T	p.Leu1022Phe	p.L1022F	ENST00000219476	NM_000548.3	1022	Ctc/Ttc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81922819	81922819	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	87	425	0	ENST00000359376.3:c.808A>C	p.Thr270Pro	p.T270P	ENST00000359376	NM_002661.3	270	Aca/Cca																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838120	89838120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	34	437	0	ENST00000389301.3:c.2117T>C	p.Ile706Thr	p.I706T	ENST00000389301	NM_000135.2	706	aTc/aCc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983748	15983748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	37	427	0	ENST00000268712.3:c.3374G>T	p.Arg1125Met	p.R1125M	ENST00000268712	NM_006311.3	1125	aGg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211700	36211700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	91	332	0	ENST00000222270.7:c.1451C>T	p.Ala484Val	p.A484V	ENST00000222270	NM_014727.1	484	gCt/gTt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026774	48026774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	72	389	0	ENST00000234420.5:c.1652G>A	p.Gly551Asp	p.G551D	ENST00000234420	NM_000179.2	551	gGc/gAc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61720123	61720123	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	39	502	0	ENST00000401558.2:c.1311A>C	p.Gln437His	p.Q437H	ENST00000401558	NM_003400.3	437	caA/caC																																																																														
EP300	2033	MSKCC	GRCh37	22	41527458	41527458	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	92	467	0	ENST00000263253.7:c.1353del	p.Asn452ThrfsTer2	p.N452Tfs*2	ENST00000263253	NM_001429.3	450	gCc/gc																																																																														
KIT	3815	MSKCC	GRCh37	4	55603380	55603380	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	74	369	1	ENST00000288135.5:c.2740delA	p.Arg914AspfsTer10	p.R914Dfs*10	ENST00000288135	NM_000222.2	912	ctA/ct																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332757	153332757	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	26	444	0	ENST00000281708.4:c.199G>T	p.Gly67Ter	p.G67*	ENST00000281708	NM_033632.3	67	Gga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592007	67592007	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	28	212	0	ENST00000274335.5:c.1823C>G	p.Ser608Ter	p.S608*	ENST00000274335		608	tCa/tGa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5089864	5089864	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	42	195	0	ENST00000381652.3:c.2761+1G>T		p.X921_splice	ENST00000381652	NM_004972.3	921																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8389319	8389319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	117	538	0	ENST00000356435.5:c.4299del	p.Glu1434LysfsTer9	p.E1434Kfs*9	ENST00000356435		1433	ccC/cc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779157	135779801	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	AAAGCAACTGGTCTCGGAGGGTGCGGATCTCATCTGAAGGAGGAGAGCCTGATTGTAAAGCAGAGGGAGGGTGGCAGAAATGCCTTTTACAGATGGTTCAATCAAGCCCCCTTCCCATGTGTTGTTAGCTTAACAAACACAATTCTTTAAAAACAAATCACCACTCTCTTTGCAAATGACCACTTGACTCCCAGCAACAGCAGGGGGGAAAGTATGGACTATGTGTCTCCCCCGTGAAGGAATGCAAAAGGTCATATCATGTGGGATGACTCTTTGAGAGCCTGCTTTCCTTTCCCCACAAATCTAGATCACGCATTTCAGATGCCCTGTTTCTCAAGACACTTCCTTCGCTGTGTGTTCTCCCCCAGGAAGATGCTTCACTCTGGTCTTCTCCAGGGAAGCCTGGCAGGAAGTCTGTATTTTGCACTTATACTCTCAAGCGCATAGTACTTGCCACTTTTCAAAAATAAGAAATGCTGACTTGGCAACACTTGAGATCCTTTAGCCAAGCAGATAGCCTGGCCGGAGCAATAGCCAAGGGGAGATCTGTTTCCCAGAGGGCACCTCCTTCAAGGACAGAAAGGGCAACAAGCAAGCAGGAACCATGTGGGCTGGATTTGGAGCTAAAGTAACAACTTTACCTCC	AAAGCAACTGGTCTCGGAGGGTGCGGATCTCATCTGAAGGAGGAGAGCCTGATTGTAAAGCAGAGGGAGGGTGGCAGAAATGCCTTTTACAGATGGTTCAATCAAGCCCCCTTCCCATGTGTTGTTAGCTTAACAAACACAATTCTTTAAAAACAAATCACCACTCTCTTTGCAAATGACCACTTGACTCCCAGCAACAGCAGGGGGGAAAGTATGGACTATGTGTCTCCCCCGTGAAGGAATGCAAAAGGTCATATCATGTGGGATGACTCTTTGAGAGCCTGCTTTCCTTTCCCCACAAATCTAGATCACGCATTTCAGATGCCCTGTTTCTCAAGACACTTCCTTCGCTGTGTGTTCTCCCCCAGGAAGATGCTTCACTCTGGTCTTCTCCAGGGAAGCCTGGCAGGAAGTCTGTATTTTGCACTTATACTCTCAAGCGCATAGTACTTGCCACTTTTCAAAAATAAGAAATGCTGACTTGGCAACACTTGAGATCCTTTAGCCAAGCAGATAGCCTGGCCGGAGCAATAGCCAAGGGGAGATCTGTTTCCCAGAGGGCACCTCCTTCAAGGACAGAAAGGGCAACAAGCAAGCAGGAACCATGTGGGCTGGATTTGGAGCTAAAGTAACAACTTTACCTCC	-			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	82	404	0	ENST00000298552.3:c.2038_2089del		p.X680_splice	ENST00000298552	NM_001162426.1	680	GGAGGTAAAGTTGTTACTTTAGCTCCAAATCCAGCCCACATGGTTCCTGCTTGCTTGTTGCCCTTTCTGTCCTTGAAGGAGGTGCCCTCTGGGAAACAGATCTCCCCTTGGCTATTGCTCCGGCCAGGCTATCTGCTTGGCTAAAGGATCTCAAGTGTTGCCAAGTCAGCATTTCTTATTTTTGAAAAGTGGCAAGTACTATGCGCTTGAGAGTATAAGTGCAAAATACAGACTTCCTGCCAGGCTTCCCTGGAGAAGACCAGAGTGAAGCATCTTCCTGGGGGAGAACACACAGCGAAGGAAGTGTCTTGAGAAACAGGGCATCTGAAATGCGTGATCTAGATTTGTGGGGAAAGGAAAGCAGGCTCTCAAAGAGTCATCCCACATGATATGACCTTTTGCATTCCTTCACGGGGGAGACACATAGTCCATACTTTCCCCCCTGCTGTTGCTGGGAGTCAAGTGGTCATTTGCAAAGAGAGTGGTGATTTGTTTTTAAAGAATTGTGTTTGTTAAGCTAACAACACATGGGAAGGGGGCTTGATTGAACCATCTGTAAAAGGCATTTCTGCCACCCTCCCTCTGCTTTACAATCAGGCTCTCCTCCTTCAGATGAGATCCGCACCCTCCGAGACCAGTTGCTTTta/ta																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652207	48652207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	82	367	0	ENST00000376670.3:c.878G>A	p.Arg293Gln	p.R293Q	ENST00000376670	NM_002049.3	293	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026540-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	267	644	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026540-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			909	119	668	1	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610171	10610171	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026540-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			923	210	840	0	ENST00000171111.5:c.539A>T	p.Asp180Val	p.D180V	ENST00000171111	NM_203500.1	180	gAc/gTc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56174909	56174909	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026540-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	173	440	0	ENST00000399503.3:c.2070del	p.Lys690AsnfsTer35	p.K690Nfs*35	ENST00000399503	NM_005921.1	690	Aaa/aa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178245	56178246	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026540-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	349	447	0	ENST00000399503.3:c.3221dup	p.Asp1075ArgfsTer6	p.D1075Rfs*6	ENST00000399503	NM_005921.1	1073	cag/caGg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878175	151878175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026540-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			741	380	725	0	ENST00000262189.6:c.6770del	p.Arg2257GlnfsTer10	p.R2257Qfs*10	ENST00000262189	NM_170606.2	2257	cGa/ca																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	200	283	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	325	473	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	161	263	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	156	275	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	358	533	0	ENST00000346208.3:c.404delC	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255500	16255500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140341054		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	210	401	0	ENST00000375759.3:c.2765C>T	p.Thr922Met	p.T922M	ENST00000375759	NM_015001.2	922	aCg/aTg																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	525	650	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	339	580	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1293457	1293457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	372	478	0	ENST00000310581.5:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000310581	NM_198253.2	515	cGg/cAg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	467	545	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279825	46279836	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAA	CAGCAGCAGCAA	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	59	287	3	ENST00000371998.3:c.3762_3773delACAGCAGCAGCA	p.Gln1273_Gln1276del	p.Q1273_Q1276del	ENST00000371998		1251	CAGCAGCAGCAA/-																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	213	305	0	ENST00000375759.3:c.3154delA	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	194	344	8	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281250	15281250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	502	648	0	ENST00000263388.2:c.5006G>A	p.Arg1669His	p.R1669H	ENST00000263388	NM_000435.2	1669	cGc/cAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	248	286	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276722	15276722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	402	525	2	ENST00000263388.2:c.5543G>A	p.Arg1848His	p.R1848H	ENST00000263388	NM_000435.2	1848	cGt/cAt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	500	342	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	151	404	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924382	131924382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	83	200	0	ENST00000265335.6:c.1055G>A	p.Arg352His	p.R352H	ENST00000265335		352	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112137039	112137039	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	199	358	0	ENST00000257430.4:c.793G>T	p.Gly265Ter	p.G265*	ENST00000257430	NM_000038.5	265	Gga/Tga																																																																														
RARA	5914	MSKCC	GRCh37	17	38510723	38510723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	250	309	0	ENST00000254066.5:c.977C>T	p.Thr326Met	p.T326M	ENST00000254066	NM_000964.3	326	aCg/aTg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564530	86564530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	78	390	0	ENST00000274376.6:c.266del	p.Gly89GlufsTer7	p.G89Efs*7	ENST00000274376	NM_002890.2	88	Ggg/gg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	359	254	0	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244155	153244156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	282	388	0	ENST00000281708.4:c.2001dup	p.Ser668GlufsTer26	p.S668Efs*26	ENST00000281708	NM_033632.3	667	-/G																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	213	294	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753011	57753012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	105	256	6	ENST00000274289.3:c.1004dupT	p.Leu335PhefsTer12	p.L335Ffs*12	ENST00000274289	NM_006622.3	335	ttg/ttTg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070361	37070361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	206	311	0	ENST00000231790.2:c.1496G>T	p.Arg499Met	p.R499M	ENST00000231790	NM_000249.3	499	aGg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108173696	108173696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	89	288	0	ENST00000278616.4:c.5441del	p.Leu1814TrpfsTer14	p.L1814Wfs*14	ENST00000278616	NM_000051.3	1812	gcT/gc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	473	612	2	ENST00000263253.7:c.6970delC	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780181	9780181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	366	442	0	ENST00000377346.4:c.1351G>A	p.Glu451Lys	p.E451K	ENST00000377346	NM_005026.3	451	Gag/Aag																																																																														
MALT1	10892	MSKCC	GRCh37	18	56348561	56348561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	112	198	0	ENST00000348428.3:c.374del	p.Pro125GlnfsTer3	p.P125Qfs*3	ENST00000348428	NM_006785.3	123	agC/ag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940112	49940112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	301	540	2	ENST00000296474.3:c.931del	p.Ala311ProfsTer27	p.A311Pfs*27	ENST00000296474	NM_002447.2	311	Gcc/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	341	495	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	418	457	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396886	139396886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	175	419	1	ENST00000277541.6:c.5222C>T	p.Ala1741Val	p.A1741V	ENST00000277541	NM_017617.3	1741	gCg/gTg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	107	301	2	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																														
MET	4233	MSKCC	GRCh37	7	116339280	116339280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	52	249	0	ENST00000397752.3:c.142G>A	p.Ala48Thr	p.A48T	ENST00000397752	NM_000245.2	48	Gcg/Acg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39728847	39728847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	149	257	0	ENST00000361337.2:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000361337	NM_003286.2	376	cGa/cAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779743	3779743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	292	452	0	ENST00000262367.5:c.5305C>T	p.Arg1769Trp	p.R1769W	ENST00000262367	NM_004380.2	1769	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	282	641	1	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
PARP1	142	MSKCC	GRCh37	1	226576366	226576366	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	199	383	0	ENST00000366794.5:c.708del	p.Ala237ProfsTer2	p.A237Pfs*2	ENST00000366794	NM_001618.3	236	aaA/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	442	653	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
RET	5979	MSKCC	GRCh37	10	43597883	43597883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	438	603	1	ENST00000355710.3:c.431G>A	p.Arg144His	p.R144H	ENST00000355710	NM_020975.4	144	cGc/cAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048787	180048787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	312	632	2	ENST00000261937.6:c.1775G>A	p.Arg592His	p.R592H	ENST00000261937	NM_182925.4	592	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214866	36214866	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	519	625	3	ENST00000222270.7:c.3296del	p.Gly1099AlafsTer83	p.G1099Afs*83	ENST00000222270	NM_014727.1	1098	Ggg/gg																																																																														
INSR	3643	MSKCC	GRCh37	19	7184610	7184610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	225	241	0	ENST00000302850.5:c.691G>A	p.Glu231Lys	p.E231K	ENST00000302850	NM_000208.2	231	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70361086	70361091	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	106	143	0	ENST00000374080.3:c.6285_6290del	p.Gln2114_Gln2115del	p.Q2114_Q2115del	ENST00000374080		2092	CAGCAA/-																																																																														
CASP8	841	MSKCC	GRCh37	2	202136268	202136268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	206	397	0	ENST00000358485.4:c.512T>C	p.Val171Ala	p.V171A	ENST00000358485	NM_001080125.1	171	gTg/gCg																																																																														
MED12	9968	MSKCC	GRCh37	X	70361092	70361100	+	inframe_deletion	In_Frame_Del	DEL	CAGCAACAG	CAGCAACAG	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	21	152	0	ENST00000374080.3:c.6285_6293del	p.Gln2113_Gln2115del	p.Q2113_Q2115del	ENST00000374080		2094	CAGCAACAG/-																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46267849	46267849	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	226	439	1	ENST00000371998.3:c.2615del	p.Asn872IlefsTer20	p.N872Ifs*20	ENST00000371998		870	gtA/gt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969978	81969978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	203	273	0	ENST00000359376.3:c.3047C>T	p.Thr1016Met	p.T1016M	ENST00000359376	NM_002661.3	1016	aCg/aTg																																																																														
YAP1	10413	MSKCC	GRCh37	11	102033228	102033228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	416	425	0	ENST00000282441.5:c.614C>T	p.Ala205Val	p.A205V	ENST00000282441	NM_001130145.2	205	gCc/gTc																																																																														
REL	5966	MSKCC	GRCh37	2	61145678	61145678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	158	375	0	ENST00000295025.8:c.790C>T	p.Arg264Trp	p.R264W	ENST00000295025	NM_002908.2	264	Cgg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190344	32190344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146490163		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	318	459	1	ENST00000375023.3:c.395G>A	p.Arg132His	p.R132H	ENST00000375023	NM_004557.3	132	cGc/cAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89355061	89355061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	330	424	0	ENST00000301030.4:c.619G>A	p.Glu207Lys	p.E207K	ENST00000301030	NM_001256183.1	207	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227816	36227816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	469	578	0	ENST00000222270.7:c.7301C>T	p.Ala2434Val	p.A2434V	ENST00000222270	NM_014727.1	2434	gCg/gTg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159144	143159144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	81	222	0	ENST00000262992.4:c.709A>G	p.Lys237Glu	p.K237E	ENST00000262992	NM_001101669.1	237	Aaa/Gaa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123260445	123260445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	275	392	0	ENST00000358487.5:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000358487	NM_000141.4	486	Ccc/Tcc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780881	9780881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	420	596	0	ENST00000377346.4:c.1603C>T	p.Arg535Trp	p.R535W	ENST00000377346	NM_005026.3	535	Cgg/Tgg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9781541	9781541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	284	388	0	ENST00000377346.4:c.1851G>T	p.Gln617His	p.Q617H	ENST00000377346	NM_005026.3	617	caG/caT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466341	120466341	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	97	382	0	ENST00000256646.2:c.4778A>G	p.Tyr1593Cys	p.Y1593C	ENST00000256646	NM_024408.3	1593	tAt/tGt																																																																														
SUFU	51684	MSKCC	GRCh37	10	104359302	104359302	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	286	328	0	ENST00000369902.3:c.1022+1G>A		p.X341_splice	ENST00000369902	NM_016169.3	341																																																																															
RECQL	5965	MSKCC	GRCh37	12	21629872	21629872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	134	379	0	ENST00000421138.2:c.922A>G	p.Ile308Val	p.I308V	ENST00000421138		308	Att/Gtt																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944698	31944701	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	17	40	0	ENST00000340398.3:c.400_403del	p.Arg134LeufsTer3	p.R134Lfs*3	ENST00000340398	NM_001013699.2	134	AGAGct/ct																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562394	21562394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	380	406	0	ENST00000382592.4:c.1525C>A	p.Pro509Thr	p.P509T	ENST00000382592	NM_014572.2	509	Cca/Aca																																																																														
BLM	641	MSKCC	GRCh37	15	91358330	91358331	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	140	244	0	ENST00000355112.3:c.4080dup		p.X1360_splice	ENST00000355112	NM_000057.2	1360																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99250907	99250907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	301	371	0	ENST00000268035.6:c.211C>A	p.Arg71Ser	p.R71S	ENST00000268035	NM_000875.3	71	Cgc/Agc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99482454	99482454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	271	355	0	ENST00000268035.6:c.3322A>C	p.Ser1108Arg	p.S1108R	ENST00000268035	NM_000875.3	1108	Agc/Cgc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2124201	2124201	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	299	383	0	ENST00000219476.3:c.2356C>T	p.Arg786Cys	p.R786C	ENST00000219476	NM_000548.3	786	Cgc/Tgc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133731	2133731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62642481		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	115	605	0	ENST00000219476.3:c.3919G>A	p.Glu1307Lys	p.E1307K	ENST00000219476	NM_000548.3	1307	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779749	3779749	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	315	464	0	ENST00000262367.5:c.5299T>A	p.Ser1767Thr	p.S1767T	ENST00000262367	NM_004380.2	1767	Tca/Aca																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3929878	3929878	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	284	399	1	ENST00000262367.5:c.40del	p.Arg14GlufsTer31	p.R14Efs*31	ENST00000262367	NM_004380.2	14	Aga/ga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984391	72984391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	278	342	0	ENST00000268489.5:c.3193G>A	p.Glu1065Lys	p.E1065K	ENST00000268489	NM_006885.3	1065	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16062081	16062083	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	201	262	0	ENST00000268712.3:c.723_725del	p.Asp241del	p.D241del	ENST00000268712	NM_006311.3	241	gaTGAg/gag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16097774	16097774	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	271	397	0	ENST00000268712.3:c.108+2T>C		p.X36_splice	ENST00000268712	NM_006311.3	36																																																																															
SUZ12	23512	MSKCC	GRCh37	17	30321667	30321667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	196	463	1	ENST00000322652.5:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000322652	NM_015355.2	508	Cgc/Tgc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37646884	37646884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	355	505	2	ENST00000447079.4:c.2006T>C	p.Leu669Pro	p.L669P	ENST00000447079	NM_015083.1	669	cTt/cCt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604770	48604770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	244	278	0	ENST00000342988.3:c.1592G>A	p.Arg531Gln	p.R531Q	ENST00000342988	NM_005359.5	531	cGg/cAg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1627406	1627407	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	470	574	1	ENST00000344749.5:c.317dup	p.Ala107ArgfsTer85	p.A107Rfs*85	ENST00000344749	NM_001136139.2	106	ggc/ggGc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5239011	5239011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	421	579	1	ENST00000357368.4:c.1768T>C	p.Tyr590His	p.Y590H	ENST00000357368	NM_002850.3	590	Tac/Cac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281364	15281364	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	300	505	0	ENST00000263388.2:c.4892G>A	p.Gly1631Glu	p.G1631E	ENST00000263388	NM_000435.2	1631	gGg/gAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210892	36210893	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	351	627	0	ENST00000222270.7:c.649dupC	p.Arg217ProfsTer35	p.R217Pfs*35	ENST00000222270	NM_014727.1	215	acc/aCcc																																																																														
AKT2	208	MSKCC	GRCh37	19	40761168	40761168	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	324	390	0	ENST00000392038.2:c.184C>A	p.Leu62Met	p.L62M	ENST00000392038	NM_001626.4	62	Ctg/Atg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467502	25467502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	370	489	1	ENST00000264709.3:c.1574C>T	p.Ala525Val	p.A525V	ENST00000264709	NM_175629.2	525	gCg/gTg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99189344	99189344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	382	415	0	ENST00000074304.5:c.2600A>G	p.His867Arg	p.H867R	ENST00000074304	NM_001134224.1	867	cAt/cGt																																																																														
CASP8	841	MSKCC	GRCh37	2	202137425	202137425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	203	334	0	ENST00000358485.4:c.653T>C	p.Ile218Thr	p.I218T	ENST00000358485	NM_001080125.1	218	aTc/aCc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660772	227660772	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	280	428	0	ENST00000305123.5:c.2683del	p.Glu895AsnfsTer48	p.E895Nfs*48	ENST00000305123	NM_005544.2	895	Gaa/aa																																																																														
AURKA	6790	MSKCC	GRCh37	20	54958233	54958233	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	145	254	0	ENST00000312783.6:c.375-1G>A		p.X125_splice	ENST00000312783	NM_198436.1	125																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484242	57484242	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	244	302	0	ENST00000371085.3:c.556A>G	p.Lys186Glu	p.K186E	ENST00000371085	NM_000516.4	186	Aag/Gag																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321659	62321660	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	355	484	0	ENST00000508582.2:c.2356dup	p.Arg786ProfsTer29	p.R786Pfs*29	ENST00000508582		784	gcc/gCcc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574269	41574269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	376	516	0	ENST00000263253.7:c.6554G>A	p.Arg2185Gln	p.R2185Q	ENST00000263253	NM_001429.3	2185	cGa/cAa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439909	52439909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	77	346	0	ENST00000460680.1:c.803C>T	p.Pro268Leu	p.P268L	ENST00000460680	NM_004656.3	268	cCa/cTa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440867	52440867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	402	462	0	ENST00000460680.1:c.637C>T	p.Arg213Cys	p.R213C	ENST00000460680	NM_004656.3	213	Cgt/Tgt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749379	41749379	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	163	223	0	ENST00000226382.2:c.416A>C	p.Glu139Ala	p.E139A	ENST00000226382	NM_003924.3	139	gAg/gCg																																																																														
KIT	3815	MSKCC	GRCh37	4	55564559	55564559	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	301	429	0	ENST00000288135.5:c.450del	p.Cys151AlafsTer10	p.C151Afs*10	ENST00000288135	NM_000222.2	149	aaG/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1293760	1293760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	442	602	0	ENST00000310581.5:c.1241C>T	p.Pro414Leu	p.P414L	ENST00000310581	NM_198253.2	414	cCg/cTg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176518050	176518050	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149737957		P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	454	524	3	ENST00000292408.4:c.548G>A	p.Arg183His	p.R183H	ENST00000292408	NM_213647.1	183	cGc/cAc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910704	29910704	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	353	704	0	ENST00000376809.5:c.244G>T	p.Glu82Ter	p.E82*	ENST00000376809	NM_002116.7	82	Gag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163553	32163554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	112	406	0	ENST00000375023.3:c.5671_5672dup	p.Gly1892AlafsTer13	p.G1892Afs*13	ENST00000375023	NM_004557.3	1891	ggc/ggGGc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815832	32815832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	383	465	0	ENST00000354258.4:c.1784C>T	p.Ala595Val	p.A595V	ENST00000354258	NM_000593.5	595	gCg/gTg																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748504	43748504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	318	358	1	ENST00000523873.1:c.458G>A	p.Arg153Gln	p.R153Q	ENST00000523873		153	cGa/cAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2952951	2952951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	433	452	0	ENST00000396946.4:c.2989G>T	p.Gly997Cys	p.G997C	ENST00000396946	NM_032415.4	997	Ggt/Tgt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959181	2959181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	395	486	0	ENST00000396946.4:c.2335C>T	p.Arg779Trp	p.R779W	ENST00000396946	NM_032415.4	779	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968238	2968238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	461	507	0	ENST00000396946.4:c.1748A>G	p.His583Arg	p.H583R	ENST00000396946	NM_032415.4	583	cAt/cGt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5064973	5064973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	98	288	0	ENST00000381652.3:c.1147C>T	p.Leu383Phe	p.L383F	ENST00000381652	NM_004972.3	383	Ctc/Ttc																																																																														
SYK	6850	MSKCC	GRCh37	9	93606412	93606412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	348	481	1	ENST00000375746.1:c.232G>A	p.Gly78Ser	p.G78S	ENST00000375746	NM_001174167.1	78	Ggt/Agt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209582	98209582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	330	474	1	ENST00000331920.6:c.3956G>A	p.Arg1319His	p.R1319H	ENST00000331920	NM_000264.3	1319	cGc/cAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139403510	139403510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	387	513	0	ENST00000277541.6:c.2983G>A	p.Gly995Ser	p.G995S	ENST00000277541	NM_017617.3	995	Ggt/Agt																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139563106	139563106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	331	443	1	ENST00000308874.7:c.178C>T	p.Arg60Trp	p.R60W	ENST00000308874		60	Cgg/Tgg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411302	63411302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	368	271	0	ENST00000330258.3:c.1865A>G	p.Glu622Gly	p.E622G	ENST00000330258	NM_152424.3	622	gAg/gGg																																																																														
MED12	9968	MSKCC	GRCh37	X	70360645	70360647	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0030774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	10	150	0	ENST00000374080.3:c.6207_6209del	p.Gln2076del	p.Q2076del	ENST00000374080		2069	CAA/-																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255310	16255311	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	150	504	0	ENST00000375759.3:c.2580_2581del	p.Lys861SerfsTer2	p.K861Sfs*2	ENST00000375759	NM_015001.2	859	AGa/a																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261673	16261673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	229	563	0	ENST00000375759.3:c.8938T>C	p.Ser2980Pro	p.S2980P	ENST00000375759	NM_015001.2	2980	Tcc/Ccc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			666	188	602	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	179	571	2	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																														
MPL	4352	MSKCC	GRCh37	1	43803533	43803533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			657	265	669	0	ENST00000372470.3:c.14C>T	p.Ala5Val	p.A5V	ENST00000372470	NM_005373.2	5	gCc/gTc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748150	72748150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	134	360	0	ENST00000357731.5:c.28G>A	p.Ala10Thr	p.A10T	ENST00000357731	NM_173808.2	10	Gct/Act																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458694	120458695	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	185	550	0	ENST00000256646.2:c.6650_6651del	p.Val2217AlafsTer26	p.V2217Afs*26	ENST00000256646	NM_024408.3	2217	gTG/g																																																																														
TET1	80312	MSKCC	GRCh37	10	70426908	70426908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	199	494	0	ENST00000373644.4:c.4568A>G	p.Asp1523Gly	p.D1523G	ENST00000373644	NM_030625.2	1523	gAt/gGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692889	89692889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	165	446	1	ENST00000371953.3:c.375delA	p.Ala126LeufsTer8	p.A126Lfs*8	ENST00000371953	NM_000314.4	125	Aaa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692901	89692901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	203	542	0	ENST00000371953.3:c.385G>A	p.Gly129Arg	p.G129R	ENST00000371953	NM_000314.4	129	Gga/Aga																																																																														
ATM	472	MSKCC	GRCh37	11	108137926	108137926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199875915		P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	134	401	0	ENST00000278616.4:c.2495G>A	p.Arg832His	p.R832H	ENST00000278616	NM_000051.3	832	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108151775	108151776	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	173	480	0	ENST00000278616.4:c.3457_3458del	p.Val1153PhefsTer12	p.V1153Ffs*12	ENST00000278616	NM_000051.3	1152	tcTGtt/tctt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118370597	118370597	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	165	429	0	ENST00000534358.1:c.6127T>C	p.Cys2043Arg	p.C2043R	ENST00000534358	NM_005933.3	2043	Tgt/Cgt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373789	118373790	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	106	382	0	ENST00000534358.1:c.7185_7186del	p.Pro2396ArgfsTer2	p.P2396Rfs*2	ENST00000534358	NM_005933.3	2394	tcCTct/tcct																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871758	12871758	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	57	122	0	ENST00000228872.4:c.476-1G>T		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																															
POLE	5426	MSKCC	GRCh37	12	133220519	133220520	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	249	687	0	ENST00000320574.5:c.4193_4194del	p.Tyr1398Ter	p.Y1398*	ENST00000320574	NM_006231.2	1398	tAT/t																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562303	21562303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			796	290	843	0	ENST00000382592.4:c.1616G>A	p.Gly539Asp	p.G539D	ENST00000382592	NM_014572.2	539	gGc/gAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48934251	48934251	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	176	558	0	ENST00000267163.4:c.706A>T	p.Lys236Ter	p.K236*	ENST00000267163	NM_000321.2	236	Aaa/Taa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436437	110436437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	267	836	1	ENST00000375856.3:c.1964C>A	p.Pro655His	p.P655H	ENST00000375856	NM_003749.2	655	cCc/cAc																																																																														
MGA	23269	MSKCC	GRCh37	15	41988520	41988520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			717	179	568	0	ENST00000219905.7:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000219905	NM_001164273.1	438	Gct/Act																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43713351	43713354	+	frameshift_variant	Frame_Shift_Del	DEL	CTGA	CTGA	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	332	1037	0	ENST00000382044.4:c.4119_4122del	p.Ser1373ArgfsTer54	p.S1373Rfs*54	ENST00000382044	NM_001141980.1	1373	agTCAG/ag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251196	99251196	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	198	670	0	ENST00000268035.6:c.500A>G	p.Asn167Ser	p.N167S	ENST00000268035	NM_000875.3	167	aAc/aGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830049	72830050	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			842	260	791	0	ENST00000268489.5:c.6531_6532del	p.Glu2177AspfsTer27	p.E2177Dfs*27	ENST00000268489	NM_006885.3	2177	gaGAtg/gatg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830767	72830768	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			734	265	681	1	ENST00000268489.5:c.5813_5814del	p.Ser1938Ter	p.S1938*	ENST00000268489	NM_006885.3	1938	tCA/t																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993641	72993641	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			628	238	650	0	ENST00000268489.5:c.404A>T	p.Tyr135Phe	p.Y135F	ENST00000268489	NM_006885.3	135	tAc/tTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	204	508	2	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119796	17119796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			724	202	679	1	ENST00000285071.4:c.1198G>A	p.Val400Ile	p.V400I	ENST00000285071	NM_144997.5	400	Gtc/Atc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30322602	30322602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	140	449	0	ENST00000322652.5:c.1615A>G	p.Ser539Gly	p.S539G	ENST00000322652	NM_015355.2	539	Agc/Ggc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40461451	40461451	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			895	332	717	0	ENST00000345506.4:c.2175del	p.Ser726ProfsTer90	p.S726Pfs*90	ENST00000345506	NM_003152.3	724	gCc/gc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436067	56436067	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			610	220	506	0	ENST00000407977.2:c.1070A>G	p.Tyr357Cys	p.Y357C	ENST00000407977		357	tAc/tGc																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56787338	56787338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	179	492	0	ENST00000337432.4:c.824A>G	p.Asn275Ser	p.N275S	ENST00000337432	NM_058216.2	275	aAt/aGt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533673	63533673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			638	219	599	0	ENST00000307078.5:c.1481C>T	p.Pro494Leu	p.P494L	ENST00000307078	NM_004655.3	494	cCg/cTg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796954	78796954	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			797	210	706	0	ENST00000306801.3:c.1067T>A	p.Ile356Asn	p.I356N	ENST00000306801	NM_020761.2	356	aTt/aAt																																																																														
STK11	6794	MSKCC	GRCh37	19	1226453	1226453	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			863	294	787	0	ENST00000326873.7:c.1109G>T	p.Gly370Val	p.G370V	ENST00000326873	NM_000455.4	370	gGa/gTa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2185898	2185898	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			783	264	646	0	ENST00000398665.3:c.170A>T	p.Asn57Ile	p.N57I	ENST00000398665	NM_032482.2	57	aAt/aTt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222973	5222973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			740	241	656	2	ENST00000357368.4:c.2830G>A	p.Gly944Arg	p.G944R	ENST00000357368	NM_002850.3	944	Ggg/Agg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223279	5223279	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			733	263	701	2	ENST00000357368.4:c.2524C>T	p.Gln842Ter	p.Q842*	ENST00000357368	NM_002850.3	842	Cag/Tag																																																																														
CIC	23152	MSKCC	GRCh37	19	42796508	42796508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	346	958	0	ENST00000575354.2:c.3065C>T	p.Ala1022Val	p.A1022V	ENST00000575354	NM_015125.3	1022	gCg/gTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797333	42797333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			916	278	854	0	ENST00000575354.2:c.3695C>A	p.Pro1232His	p.P1232H	ENST00000575354	NM_015125.3	1232	cCt/cAt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919678	50919678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	296	920	0	ENST00000440232.2:c.2846G>T	p.Ser949Ile	p.S949I	ENST00000440232	NM_002691.3	949	aGc/aTc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46588066	46588066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			540	253	733	0	ENST00000263734.3:c.616C>A	p.Pro206Thr	p.P206T	ENST00000263734	NM_001430.4	206	Cct/Act																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96930957	96930957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	266	638	0	ENST00000258439.3:c.163C>T	p.His55Tyr	p.H55Y	ENST00000258439	NM_001193304.2	55	Cac/Tac																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	79	256	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
TOP1	7150	MSKCC	GRCh37	20	39704905	39704906	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	57	186	0	ENST00000361337.2:c.253_254del	p.Asp85GlnfsTer27	p.D85Qfs*27	ENST00000361337	NM_003286.2	84	AGa/a																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702569	52702569	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	204	585	0	ENST00000394830.3:c.329A>T	p.Asn110Ile	p.N110I	ENST00000394830	NM_018313.4	110	aAt/aTt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431092	181431093	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	192	490	0	ENST00000325404.1:c.948_949del	p.Met317ValfsTer120	p.M317Vfs*120	ENST00000325404	NM_003106.3	315	tCA/t																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190885	185190885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			770	292	770	0	ENST00000265026.3:c.1766G>A	p.Arg589His	p.R589H	ENST00000265026	NM_004721.4	589	cGc/cAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55589841	55589841	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	174	582	0	ENST00000288135.5:c.1327del	p.Cys443ValfsTer20	p.C443Vfs*20	ENST00000288135	NM_000222.2	441	taT/ta																																																																														
TET2	54790	MSKCC	GRCh37	4	106155784	106155785	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	158	469	0	ENST00000380013.4:c.687_688del	p.Leu230ValfsTer23	p.L230Vfs*23	ENST00000380013	NM_001127208.2	229	ACa/a																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31410922	31410922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			897	256	820	2	ENST00000344624.3:c.3598G>A	p.Ala1200Thr	p.A1200T	ENST00000344624		1200	Gcc/Acc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176618895	176618896	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			662	197	498	0	ENST00000439151.2:c.939_940del	p.Lys315ValfsTer7	p.K315Vfs*7	ENST00000439151	NM_022455.4	313	aAG/a																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522353	157522353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			803	270	742	0	ENST00000346085.5:c.4625C>T	p.Thr1542Met	p.T1542M	ENST00000346085	NM_020732.3	1542	aCg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859484	151859485	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			927	227	649	0	ENST00000262189.6:c.11177_11178del	p.Glu3726ValfsTer9	p.E3726Vfs*9	ENST00000262189	NM_170606.2	3726	gAG/g																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38146223	38146224	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			909	247	764	0	ENST00000317025.8:c.3282_3283del	p.Glu1094AspfsTer5	p.E1094Dfs*5	ENST00000317025	NM_023034.1	1094	gaGAtt/gatt																																																																														
RAD21	5885	MSKCC	GRCh37	8	117875375	117875375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	121	469	0	ENST00000297338.2:c.268C>T	p.Arg90Trp	p.R90W	ENST00000297338	NM_006265.2	90	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8525018	8525018	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1329822805		P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	127	418	1	ENST00000356435.5:c.586C>T	p.Gln196Ter	p.Q196*	ENST00000356435		196	Cag/Tag																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80646066	80646066	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	73	185	0	ENST00000286548.4:c.86T>A	p.Leu29His	p.L29H	ENST00000286548	NM_002072.3	29	cTc/cAc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300040	137300040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			923	248	797	1	ENST00000481739.1:c.331del	p.Leu111TrpfsTer57	p.L111Wfs*57	ENST00000481739	NM_002957.4	109	Ccc/cc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15840943	15840943	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			122	146	185	0	ENST00000307771.7:c.1027A>T	p.Asn343Tyr	p.N343Y	ENST00000307771	NM_005089.3	343	Aat/Tat																																																																														
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	166	253	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
PMS2	5395	MSKCC	GRCh37	7	6027112	6027112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031374-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			8	16	14	0	ENST00000265849.7:c.1284C>A	p.His428Gln	p.H428Q	ENST00000265849	NM_000535.5	428	caC/caA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033914-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			294	159	287	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033914-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			309	153	415	0				ENST00000310581	NM_198253.2																																																																																
NOTCH3	4854	MSKCC	GRCh37	19	15299106	15299106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033914-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			628	273	744	0	ENST00000263388.2:c.1432T>C	p.Cys478Arg	p.C478R	ENST00000263388	NM_000435.2	478	Tgt/Cgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874419	151874419	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033914-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			261	144	328	0	ENST00000262189.6:c.8119G>T	p.Val2707Phe	p.V2707F	ENST00000262189	NM_170606.2	2707	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	594	708	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347852	347852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	68	762	0	ENST00000262320.3:c.1654G>C	p.Ala552Pro	p.A552P	ENST00000262320	NM_003502.3	552	Gcc/Ccc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582849	95582849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	50	357	0	ENST00000343455.3:c.1693G>T	p.Asp565Tyr	p.D565Y	ENST00000343455	NM_177438.2	565	Gat/Tat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786069	3786069	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	365	573	0	ENST00000262367.5:c.4696G>T	p.Glu1566Ter	p.E1566*	ENST00000262367	NM_004380.2	1566	Gaa/Taa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350181	89350181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	74	834	0	ENST00000301030.4:c.2769G>C	p.Gln923His	p.Q923H	ENST00000301030	NM_001256183.1	923	caG/caC																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78727938	78727948	+	frameshift_variant	Frame_Shift_Del	DEL	CCTATTCACCT	CCTATTCACCT	-			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	45	444	0	ENST00000306801.3:c.786_796del	p.Phe263ProfsTer45	p.F263Pfs*45	ENST00000306801	NM_020761.2	261	gaCCTATTCACCTcc/gacc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599903	10599903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	502	578	0	ENST00000171111.5:c.1673G>T	p.Gly558Val	p.G558V	ENST00000171111	NM_203500.1	558	gGg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11113822	11113822	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	124	475	0	ENST00000344626.4:c.1930G>C	p.Glu644Gln	p.E644Q	ENST00000344626	NM_003072.3	644	Gag/Cag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247382	71247382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	218	454	0	ENST00000318789.4:c.151C>T	p.Leu51Phe	p.L51F	ENST00000318789	NM_032682.5	51	Ctc/Ttc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417913	138417913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	96	368	0	ENST00000289153.2:c.1606C>T	p.Pro536Ser	p.P536S	ENST00000289153	NM_006219.2	536	Cct/Tct																																																																														
KIT	3815	MSKCC	GRCh37	4	55561796	55561809	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTGTCAAATGGA	CTTTGTCAAATGGA	-			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	154	355	0	ENST00000288135.5:c.190_203del	p.Val64Ter	p.V64*	ENST00000288135	NM_000222.2	62	ggCTTTGTCAAATGGAct/ggct																																																																														
TEK	7010	MSKCC	GRCh37	9	27229161	27229161	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	290	491	0	ENST00000380036.4:c.3306C>A	p.Tyr1102Ter	p.Y1102*	ENST00000380036	NM_000459.3	1102	taC/taA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417343	139417352	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCAGGTGC	CGGCAGGTGC	-			P-0036253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	24	389	0	ENST00000277541.6:c.692_701del	p.Gly231AlafsTer43	p.G231Afs*43	ENST00000277541	NM_017617.3	231	gGCACCTGCCGc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036976-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	67	310	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036976-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	63	536	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492817	56492817	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036976-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	94	436	0	ENST00000407977.2:c.122C>A	p.Ser41Ter	p.S41*	ENST00000407977		41	tCa/tAa																																																																														
SMO	6608	MSKCC	GRCh37	7	128851593	128851593	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036976-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	35	591	0	ENST00000249373.3:c.1918A>T	p.Thr640Ser	p.T640S	ENST00000249373	NM_005631.4	640	Acc/Tcc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18499619	18499619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038269-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	67	368	0	ENST00000266497.5:c.1474C>A	p.Gln492Lys	p.Q492K	ENST00000266497		492	Cag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038269-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	111	299	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038269-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	42	156	0	ENST00000257430.4:c.3856G>A	p.Glu1286Lys	p.E1286K	ENST00000257430	NM_000038.5	1286	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81335624	81335624	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038269-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	71	319	0	ENST00000222390.5:c.1736T>A	p.Leu579Gln	p.L579Q	ENST00000222390	NM_000601.4	579	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	329	648	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	415	325	0				ENST00000310581	NM_198253.2																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	90	618	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373136	118373136	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	254	376	1	ENST00000534358.1:c.6529G>T	p.Glu2177Ter	p.E2177*	ENST00000534358	NM_005933.3	2177	Gaa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221679	36221679	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	433	850	2	ENST00000222270.7:c.5348A>G	p.Tyr1783Cys	p.Y1783C	ENST00000222270	NM_014727.1	1783	tAt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	26	472	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	366	557	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130243	2130243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	299	728	2	ENST00000219476.3:c.3475C>T	p.Arg1159Trp	p.R1159W	ENST00000219476	NM_000548.3	1159	Cgg/Tgg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915589	131915589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	81	212	2	ENST00000265335.6:c.587G>A	p.Arg196His	p.R196H	ENST00000265335		196	cGt/cAt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38949832	38949832	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	164	189	0	ENST00000357387.3:c.4118C>G	p.Ser1373Cys	p.S1373C	ENST00000357387	NM_152756.3	1373	tCc/tGc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41258552	41258558	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TATAAAT	TATAAAT	-			P-0038438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	37	274	0	ENST00000357654.3:c.135-8_135-2del		p.X45_splice	ENST00000357654	NM_007294.3	45																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786795	3786795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	106	316	1	ENST00000262367.5:c.4416G>T	p.Trp1472Cys	p.W1472C	ENST00000262367	NM_004380.2	1472	tgG/tgT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1912	91	520	0	ENST00000269305.4:c.811G>C	p.Glu271Gln	p.E271Q	ENST00000269305	NM_001126112.2	271	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1474	269	434	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627330	37627330	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	40	435	0	ENST00000447079.4:c.1245G>T	p.Met415Ile	p.M415I	ENST00000447079	NM_015083.1	415	atG/atT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141499	11141499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1733	412	586	2	ENST00000344626.4:c.3476G>T	p.Gly1159Val	p.G1159V	ENST00000344626	NM_003072.3	1159	gGg/gTg																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14629038	14629038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2105	177	370	0	ENST00000254322.2:c.124G>A	p.Glu42Lys	p.E42K	ENST00000254322	NM_006145.1	42	Gag/Aag																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14629122	14629122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2263	219	320	2	ENST00000254322.2:c.40G>A	p.Gly14Ser	p.G14S	ENST00000254322	NM_006145.1	14	Ggc/Agc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209110081	209110081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	10	444	0	ENST00000345146.2:c.482G>A	p.Gly161Glu	p.G161E	ENST00000345146	NM_005896.2	161	gGa/gAa																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748111	41748111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	160	104	0	ENST00000226382.2:c.658C>A	p.Pro220Thr	p.P220T	ENST00000226382	NM_003924.3	220	Ccg/Acg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155576	56155576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	97	279	0	ENST00000399503.3:c.668C>T	p.Ser223Phe	p.S223F	ENST00000399503	NM_005921.1	223	tCt/tTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188963	32188963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2131	303	609	0	ENST00000375023.3:c.591G>T	p.Glu197Asp	p.E197D	ENST00000375023	NM_004557.3	197	gaG/gaT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528930	157528930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1398	223	425	0	ENST00000346085.5:c.6655G>A	p.Glu2219Lys	p.E2219K	ENST00000346085	NM_020732.3	2219	Gag/Aag																																																																														
MED12	9968	MSKCC	GRCh37	X	70349167	70349167	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	256	442	1	ENST00000374080.3:c.3579C>A	p.Asn1193Lys	p.N1193K	ENST00000374080		1193	aaC/aaA																																																																														
ATRX	546	MSKCC	GRCh37	X	76938752	76938752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	19	535	0	ENST00000373344.5:c.1996C>G	p.Arg666Gly	p.R666G	ENST00000373344	NM_000489.3	666	Cga/Gga																																																																														
ATRX	546	MSKCC	GRCh37	X	76939036	76939036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	23	422	0	ENST00000373344.5:c.1712G>C	p.Arg571Thr	p.R571T	ENST00000373344	NM_000489.3	571	aGa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	20	465	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	224	320	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	474	545	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	464	586	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906958	32906958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	115	309	0	ENST00000380152.3:c.1343G>A	p.Arg448His	p.R448H	ENST00000380152		448	cGt/cAt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655391	67655391	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	391	416	0	ENST00000264010.4:c.1254A>T	p.Gln418His	p.Q418H	ENST00000264010	NM_006565.3	418	caA/caT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610078	10610078	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	399	452	0	ENST00000171111.5:c.632T>A	p.Phe211Tyr	p.F211Y	ENST00000171111	NM_203500.1	211	tTt/tAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151917703	151917703	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	185	232	0	ENST00000262189.6:c.3617T>A	p.Leu1206Ter	p.L1206*	ENST00000262189	NM_170606.2	1206	tTg/tAg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38157097	38157097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	153	439	0	ENST00000317025.8:c.2623C>A	p.Gln875Lys	p.Q875K	ENST00000317025	NM_023034.1	875	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0038444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	906	419	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
RB1	5925	MSKCC	GRCh37	13	48951164	48951165	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0038444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	122	238	0	ENST00000267163.4:c.1326_1327del	p.Ser443ThrfsTer19	p.S443Tfs*19	ENST00000267163	NM_000321.2	442	ggATca/ggca																																																																														
MED12	9968	MSKCC	GRCh37	X	70339257	70339271	+	inframe_deletion	In_Frame_Del	DEL	TCAATAACCAGCCTG	TCAATAACCAGCCTG	-			P-0038444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	372	370	0	ENST00000374080.3:c.134_148del	p.Phe45_Ala50delinsSer	p.F45_A50delinsS	ENST00000374080		45	tTCAATAACCAGCCTGct/tct																																																																														
ATRX	546	MSKCC	GRCh37	X	76920268	76920268	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0038444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	103	178	0	ENST00000373344.5:c.3810-1G>T		p.X1270_splice	ENST00000373344	NM_000489.3	1270																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0038445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	117	543	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	362	647	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	83	469	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372133	55372133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	45	350	0	ENST00000297316.4:c.823G>T	p.Gly275Cys	p.G275C	ENST00000297316	NM_022454.3	275	Ggc/Tgc																																																																														
STK40	83931	MSKCC	GRCh37	1	36823935	36823935	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	253	533	0	ENST00000373129.3:c.247G>C	p.Glu83Gln	p.E83Q	ENST00000373129	NM_032017.1	83	Gag/Cag																																																																														
CDC73	79577	MSKCC	GRCh37	1	193099358	193099358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	110	269	0	ENST00000367435.3:c.292C>G	p.Leu98Val	p.L98V	ENST00000367435	NM_024529.4	98	Ctc/Gtc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710670	114710670	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	162	397	0	ENST00000543371.1:c.155C>A	p.Ser52Ter	p.S52*	ENST00000543371	NM_001198531.1	52	tCa/tAa																																																																														
ATM	472	MSKCC	GRCh37	11	108139170	108139170	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	54	405	0	ENST00000278616.4:c.2672C>G	p.Ser891Ter	p.S891*	ENST00000278616	NM_000051.3	891	tCa/tGa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376967	118376967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	125	329	0	ENST00000534358.1:c.10360C>T	p.Gln3454Ter	p.Q3454*	ENST00000534358	NM_005933.3	3454	Cag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390389	118390389	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	228	457	1	ENST00000534358.1:c.11203G>T	p.Glu3735Ter	p.E3735*	ENST00000534358	NM_005933.3	3735	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431733	49431733	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	258	654	0	ENST00000301067.7:c.9406del	p.Ile3136LeufsTer6	p.I3136Lfs*6	ENST00000301067	NM_003482.3	3136	Att/tt																																																																														
RB1	5925	MSKCC	GRCh37	13	48934234	48934234	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	106	369	0	ENST00000267163.4:c.689C>G	p.Ser230Ter	p.S230*	ENST00000267163	NM_000321.2	230	tCa/tGa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436135	110436135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	334	595	1	ENST00000375856.3:c.2266G>A	p.Ala756Thr	p.A756T	ENST00000375856	NM_003749.2	756	Gca/Aca																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061193	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	141	349	0	ENST00000250448.2:c.796_798del	p.Phe266del	p.F266del	ENST00000250448	NM_004496.3	266	TTC/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	54	651	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	24	552	0	ENST00000269305.4:c.811G>C	p.Glu271Gln	p.E271Q	ENST00000269305	NM_001126112.2	271	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	53	502	0	ENST00000269305.4:c.796G>C	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Cga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864656	37864656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	298	581	2	ENST00000269571.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000269571		103	cGa/cAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879854	37879854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	89	543	0	ENST00000269571.5:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000269571		717	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	37	425	0	ENST00000269571.5:c.2305G>C	p.Asp769His	p.D769H	ENST00000269571		769	Gac/Cac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	240	572	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
INSR	3643	MSKCC	GRCh37	19	7170591	7170591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	223	413	0	ENST00000302850.5:c.1440G>C	p.Glu480Asp	p.E480D	ENST00000302850	NM_000208.2	480	gaG/gaC																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682844	190682844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	157	346	0	ENST00000441310.2:c.520G>A	p.Asp174Asn	p.D174N	ENST00000441310	NM_000534.4	174	Gat/Aat																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29092951	29092951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	161	338	0	ENST00000328354.6:c.1033C>T	p.His345Tyr	p.H345Y	ENST00000328354	NM_007194.3	345	Cac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	180	463	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	197	293	0				ENST00000310581	NM_198253.2																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56170913	56170913	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	23	226	0	ENST00000399503.3:c.1741G>C	p.Glu581Gln	p.E581Q	ENST00000399503	NM_005921.1	581	Gag/Cag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86679573	86679573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	120	322	0	ENST00000274376.6:c.2734C>T	p.Pro912Ser	p.P912S	ENST00000274376	NM_002890.2	912	Cca/Tca																																																																														
STK19	8859	MSKCC	GRCh37	6	31939790	31939790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	103	645	0	ENST00000375331.2:c.17C>T	p.Ser6Phe	p.S6F	ENST00000375331	NM_004197.1	6	tCt/tTt																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793550	89793550	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	21	249	0	ENST00000336032.3:c.619G>C	p.Glu207Gln	p.E207Q	ENST00000336032	NM_006813.2	207	Gag/Cag																																																																														
PARK2	5071	MSKCC	GRCh37	6	163148698	163148698	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	29	325	0	ENST00000366898.1:c.3G>A	p.Met1?	p.M1?	ENST00000366898	NM_004562.2	1	atG/atA																																																																														
NBN	4683	MSKCC	GRCh37	8	90982713	90982713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201559159		P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	38	327	0	ENST00000265433.3:c.775G>A	p.Glu259Lys	p.E259K	ENST00000265433	NM_002485.4	259	Gaa/Aaa																																																																														
TEK	7010	MSKCC	GRCh37	9	27173286	27173286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	208	517	2	ENST00000380036.4:c.827C>G	p.Ser276Cys	p.S276C	ENST00000380036	NM_000459.3	276	tCt/tGt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98221930	98221930	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	207	469	0	ENST00000331920.6:c.2839G>C	p.Glu947Gln	p.E947Q	ENST00000331920	NM_000264.3	947	Gaa/Caa																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328382	137328382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	297	637	2	ENST00000481739.1:c.1311C>A	p.Phe437Leu	p.F437L	ENST00000481739	NM_002957.4	437	ttC/ttA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	31	420	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	104	753	1	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																																																														
RHOA	387	MSKCC	GRCh37	3	49397742	49397742	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552757		P-0038500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	107	658	0	ENST00000418115.1:c.482C>T	p.Ala161Val	p.A161V	ENST00000418115	NM_001664.2	161	gCa/gTa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465510	99465510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	64	608	0	ENST00000268035.6:c.2335G>A	p.Glu779Lys	p.E779K	ENST00000268035	NM_000875.3	779	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984875	9984875	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	38	570	0	ENST00000330684.3:c.1090A>T	p.Ile364Phe	p.I364F	ENST00000330684	NM_001134407.1	364	Att/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	332	736	1	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	77	370	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481397	140481397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	93	401	0	ENST00000288602.6:c.1411G>T	p.Val471Phe	p.V471F	ENST00000288602	NM_004333.4	471	Gtc/Ttc																																																																														
APC	324	MSKCC	GRCh37	5	112175944	112175945	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	38	288	0	ENST00000257430.4:c.4655_4656del	p.Glu1552GlyfsTer6	p.E1552Gfs*6	ENST00000257430	NM_000038.5	1551	aaAGag/aaag																																																																														
APC	324	MSKCC	GRCh37	5	112116529	112116529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	79	393	1	ENST00000257430.4:c.574G>T	p.Glu192Ter	p.E192*	ENST00000257430	NM_000038.5	192	Gaa/Taa																																																																														
PARK2	5071	MSKCC	GRCh37	6	162622235	162622235	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	193	520	0	ENST00000366898.1:c.462T>A	p.Cys154Ter	p.C154*	ENST00000366898	NM_004562.2	154	tgT/tgA																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078325	5078325	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	19	403	0	ENST00000381652.3:c.2012A>C	p.His671Pro	p.H671P	ENST00000381652	NM_004972.3	671	cAt/cCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	477	612	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0038505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	12	399	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554093	63554093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	53	713	1	ENST00000307078.5:c.646G>A	p.Gly216Arg	p.G216R	ENST00000307078	NM_004655.3	216	Ggg/Agg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69218143	69218143	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0038505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	260	391	0	ENST00000462284.1:c.359A>G	p.Glu120Gly	p.E120G	ENST00000462284	NM_002392.5	120	gAa/gGa																																																																														
RB1	5925	MSKCC	GRCh37	13	48916733	48916733	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0038505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	213	386	0	ENST00000267163.4:c.265-2A>T		p.X89_splice	ENST00000267163	NM_000321.2	89																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3824689	3824689	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	375	551	0	ENST00000262367.5:c.2164A>T	p.Asn722Tyr	p.N722Y	ENST00000262367	NM_004380.2	722	Aat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	274	866	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983131	149983131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	20	554	0	ENST00000253339.5:c.3127G>A	p.Asp1043Asn	p.D1043N	ENST00000253339		1043	Gat/Aat																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729204	66729204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	53	610	0	ENST00000307102.5:c.412G>A	p.Glu138Lys	p.E138K	ENST00000307102	NM_002755.3	138	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258067	16258067	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	23	504	0	ENST00000375759.3:c.5332G>C	p.Asp1778His	p.D1778H	ENST00000375759	NM_015001.2	1778	Gac/Cac																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001099	150001099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	21	463	0	ENST00000253339.5:c.2505G>C	p.Leu835Phe	p.L835F	ENST00000253339		835	ttG/ttC																																																																														
BIRC3	330	MSKCC	GRCh37	11	102201891	102201891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	34	348	0	ENST00000263464.3:c.1243G>C	p.Asp415His	p.D415H	ENST00000263464	NM_001165.4	415	Gat/Cat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574003	95574003	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	25	262	0	ENST00000343455.3:c.2746A>G	p.Lys916Glu	p.K916E	ENST00000343455	NM_177438.2	916	Aaa/Gaa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224237	53224237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	12	807	0	ENST00000375401.3:c.3314G>T	p.Cys1105Phe	p.C1105F	ENST00000375401	NM_004187.3	1105	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	1426	509	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TET2	54790	MSKCC	GRCh37	4	106180783	106180784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	178	198	0	ENST00000380013.4:c.3812dupG	p.Cys1271TrpfsTer29	p.C1271Wfs*29	ENST00000380013	NM_001127208.2	1271	tgc/tGgc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247157	153247157	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0038538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	139	191	0	ENST00000281708.4:c.1644+1G>A		p.X548_splice	ENST00000281708	NM_033632.3	548																																																																															
BRCA1	672	MSKCC	GRCh37	17	41243898	41243898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	536	429	0	ENST00000357654.3:c.3650C>G	p.Ser1217Cys	p.S1217C	ENST00000357654	NM_007294.3	1217	tCt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175907	112175907	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	160	206	0	ENST00000257430.4:c.4616C>A	p.Ser1539Ter	p.S1539*	ENST00000257430	NM_000038.5	1539	tCa/tAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	134	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48955383	48955383	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	27	231	0	ENST00000267163.4:c.1499G>A	p.Arg500Lys	p.R500K	ENST00000267163	NM_000321.2	500	aGa/aAa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150016359	150016359	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0038539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	76	381	0	ENST00000253339.5:c.349-2A>C		p.X117_splice	ENST00000253339		117																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50455151	50455151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	27	399	0	ENST00000331340.3:c.698C>T	p.Pro233Leu	p.P233L	ENST00000331340	NM_006060.4	233	cCg/cTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135804175	135804175	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	114	482	0	ENST00000298552.3:c.85T>G	p.Phe29Val	p.F29V	ENST00000298552	NM_001162426.1	29	Ttt/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0038540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	272	868	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0038540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	122	632	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941459	71941459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	77	842	0	ENST00000298229.2:c.1144G>C	p.Glu382Gln	p.E382Q	ENST00000298229	NM_001567.3	382	Gag/Cag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436300	110436300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	31	206	1	ENST00000375856.3:c.2101G>T	p.Ala701Ser	p.A701S	ENST00000375856	NM_003749.2	701	Gcc/Tcc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974781	15974781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	137	394	0	ENST00000268712.3:c.4094G>T	p.Arg1365Leu	p.R1365L	ENST00000268712	NM_006311.3	1365	cGg/cTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589571	67589603	+	inframe_deletion	In_Frame_Del	DEL	TAGGGAAAAAATTACATGAATATAACACTCAGT	TAGGGAAAAAATTACATGAATATAACACTCAGT	-			P-0038540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	83	197	0	ENST00000274335.5:c.1335_1367del	p.Gly446_Phe456del	p.G446_F456del	ENST00000274335		445	gTAGGGAAAAAATTACATGAATATAACACTCAGTtt/gtt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965587	93965587	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	138	398	0	ENST00000369303.4:c.2341C>T	p.Arg781Ter	p.R781*	ENST00000369303	NM_004440.3	781	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	275	332	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0038541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	536	755	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0038541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	374	534	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793211	139793212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	206	724	1	ENST00000247668.2:c.26dup	p.Gly10TrpfsTer70	p.G10Wfs*70	ENST00000247668	NM_021138.3	7	acc/aCcc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913711	32913714	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TAAG	TAAG	AAA			P-0038541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	314	368	0	ENST00000380152.3:c.5219_5222delinsAAA	p.Leu1740Ter	p.L1740*	ENST00000380152		1740	tTAAGt/tAAAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	274	702	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270531	98270531	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs143494325		P-0038543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	86	301	0	ENST00000331920.6:c.113G>T	p.Gly38Val	p.G38V	ENST00000331920	NM_000264.3	38	gGg/gTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882301	89882301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	149	455	0	ENST00000389301.3:c.173A>G	p.Asn58Ser	p.N58S	ENST00000389301	NM_000135.2	58	aAt/aGt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244247	41244248	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0038543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	307	504	0	ENST00000357654.3:c.3300_3301del	p.Ser1101Ter	p.S1101*	ENST00000357654	NM_007294.3	1100	ggAAgt/gggt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86669980	86669980	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0038543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	46	188	0	ENST00000274376.6:c.1777G>T	p.Val593Phe	p.V593F	ENST00000274376	NM_002890.2	593	Gtc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	44	337	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	267	769	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	25	238	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508083	106508083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	14	239	0	ENST00000359195.3:c.77G>A	p.Arg26His	p.R26H	ENST00000359195	NM_002649.2	26	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	127	371	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	47	346	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	93	344	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830925	72830925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	48	481	0	ENST00000268489.5:c.5656G>A	p.Glu1886Lys	p.E1886K	ENST00000268489	NM_006885.3	1886	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419897	41419897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	67	532	1	ENST00000373198.4:c.424G>A	p.Val142Ile	p.V142I	ENST00000373198	NM_133170.3	142	Gtc/Atc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372254	55372254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	40	476	0	ENST00000297316.4:c.944C>T	p.Pro315Leu	p.P315L	ENST00000297316	NM_022454.3	315	cCg/cTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088795	27088795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	71	562	0	ENST00000324856.7:c.2404C>T	p.Gln802Ter	p.Q802*	ENST00000324856	NM_006015.4	802	Cag/Tag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644703	134644703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	64	446	0	ENST00000398015.3:c.104C>T	p.Thr35Met	p.T35M	ENST00000398015	NM_004441.4	35	aCg/aTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528243	157528243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	111	553	0	ENST00000346085.5:c.5968C>T	p.Arg1990Ter	p.R1990*	ENST00000346085	NM_020732.3	1990	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903709	114903712	+	frameshift_variant	Frame_Shift_Del	DEL	ATAT	ATAT	-			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	151	553	0	ENST00000543371.1:c.715_718del	p.Ile239ProfsTer11	p.I239Pfs*11	ENST00000543371	NM_001198531.1	238	gATATa/ga																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119706	17119706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	53	519	0	ENST00000285071.4:c.1288G>A	p.Val430Met	p.V430M	ENST00000285071	NM_144997.5	430	Gtg/Atg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	42	380	0	ENST00000349496.5:c.1982G>C	p.Arg661Pro	p.R661P	ENST00000349496	NM_001904.3	661	cGa/cCa																																																																														
APC	324	MSKCC	GRCh37	5	112175460	112175464	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGT	TCAGT	-			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	28	293	0	ENST00000257430.4:c.4172_4176del	p.Ser1391ThrfsTer2	p.S1391Tfs*2	ENST00000257430	NM_000038.5	1390	gTCAGT/g																																																																														
SESN1	27244	MSKCC	GRCh37	6	109415113	109415113	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	138	751	0	ENST00000436639.2:c.164del	p.Asn55IlefsTer8	p.N55Ifs*8	ENST00000436639	NM_014454.2	55	aAt/at																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228268	53228268	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	154	309	0	ENST00000375401.3:c.2134A>T	p.Thr712Ser	p.T712S	ENST00000375401	NM_004187.3	712	Act/Tct																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775801	9775801	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	103	826	0	ENST00000377346.4:c.344C>G	p.Ser115Ter	p.S115*	ENST00000377346	NM_005026.3	115	tCa/tGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100375	27100375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	183	610	1	ENST00000324856.7:c.4087C>T	p.Gln1363Ter	p.Q1363*	ENST00000324856	NM_006015.4	1363	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106255	27106255	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	47	678	0	ENST00000324856.7:c.5866G>C	p.Glu1956Gln	p.E1956Q	ENST00000324856	NM_006015.4	1956	Gag/Cag																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932259	36932259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	204	809	0	ENST00000361632.4:c.2210C>T	p.Ser737Phe	p.S737F	ENST00000361632		737	tCc/tTc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120478113	120478113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	41	500	0	ENST00000256646.2:c.3637T>C	p.Cys1213Arg	p.C1213R	ENST00000256646	NM_024408.3	1213	Tgc/Cgc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162750023	162750023	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	44	406	0	ENST00000367921.3:c.2555A>G	p.Gln852Arg	p.Q852R	ENST00000367921	NM_006182.2	852	cAa/cGa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982105	201982105	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	57	873	1	ENST00000359651.3:c.629C>G	p.Ser210Ter	p.S210*	ENST00000359651		210	tCa/tGa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692900	89692900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	18	448	0	ENST00000371953.3:c.384G>C	p.Lys128Asn	p.K128N	ENST00000371953	NM_000314.4	128	aaG/aaC																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205238	61205238	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	159	568	0	ENST00000301761.2:c.178G>C	p.Asp60His	p.D60H	ENST00000301761	NM_017841.2	60	Gat/Cat																																																																														
PGR	5241	MSKCC	GRCh37	11	100998438	100998438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	103	420	0	ENST00000325455.5:c.1364G>C	p.Gly455Ala	p.G455A	ENST00000325455	NM_001202474.3	455	gGg/gCg																																																																														
ATM	472	MSKCC	GRCh37	11	108114734	108114734	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	93	349	0	ENST00000278616.4:c.551G>C	p.Arg184Thr	p.R184T	ENST00000278616	NM_000051.3	184	aGa/aCa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118355667	118355668	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	38	529	0	ENST00000534358.1:c.4311_4312del	p.Ala1438GlnfsTer2	p.A1438Qfs*2	ENST00000534358	NM_005933.3	1437	TGt/t																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375770	118375770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	44	490	0	ENST00000534358.1:c.9163G>T	p.Asp3055Tyr	p.D3055Y	ENST00000534358	NM_005933.3	3055	Gat/Tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416523	49416523	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	84	671	0	ENST00000301067.7:c.16188G>C	p.Lys5396Asn	p.K5396N	ENST00000301067	NM_003482.3	5396	aaG/aaC																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480320	56480320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	32	389	0	ENST00000267101.3:c.427C>G	p.Leu143Val	p.L143V	ENST00000267101	NM_001982.3	143	Ctg/Gtg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549161	21549161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	49	726	1	ENST00000382592.4:c.3115G>A	p.Glu1039Lys	p.E1039K	ENST00000382592	NM_014572.2	1039	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877384	28877384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	38	459	1	ENST00000282397.4:c.3937G>A	p.Glu1313Lys	p.E1313K	ENST00000282397	NM_002019.4	1313	Gag/Aag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950806	32950806	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	95	306	0	ENST00000380152.3:c.8633-1G>C		p.X2878_splice	ENST00000380152		2878																																																																															
MGA	23269	MSKCC	GRCh37	15	42041731	42041731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	27	394	0	ENST00000219905.7:c.5926G>C	p.Asp1976His	p.D1976H	ENST00000219905	NM_001164273.1	1976	Gac/Cac																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701095	43701095	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	140	380	0	ENST00000382044.4:c.5600G>C	p.Trp1867Ser	p.W1867S	ENST00000382044	NM_001141980.1	1867	tGg/tCg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88799166	88799166	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	35	526	0	ENST00000360948.2:c.219C>G	p.Ile73Met	p.I73M	ENST00000360948	NM_001012338.2	73	atC/atG																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857250	9857250	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	124	556	0	ENST00000330684.3:c.4151C>G	p.Ser1384Trp	p.S1384W	ENST00000330684	NM_001134407.1	1384	tCg/tGg																																																																														
CDH1	999	MSKCC	GRCh37	16	68842603	68842603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	195	561	0	ENST00000261769.5:c.539C>A	p.Ser180Tyr	p.S180Y	ENST00000261769	NM_004360.3	180	tCc/tAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348889	89348889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	53	953	0	ENST00000301030.4:c.4061C>T	p.Ser1354Leu	p.S1354L	ENST00000301030	NM_001256183.1	1354	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	80	741	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879854	37879854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	60	738	0	ENST00000269571.5:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000269571		717	Gag/Aag																																																																														
PMAIP1	5366	MSKCC	GRCh37	18	57569902	57569902	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	24	267	0	ENST00000316660.6:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000316660	NM_021127.2	28	Caa/Taa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211158	2211158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	53	950	0	ENST00000398665.3:c.1412C>T	p.Ser471Phe	p.S471F	ENST00000398665	NM_032482.2	471	tCc/tTc																																																																														
AXL	558	MSKCC	GRCh37	19	41758823	41758823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	89	770	0	ENST00000301178.4:c.1877G>C	p.Gly626Ala	p.G626A	ENST00000301178	NM_021913.4	626	gGa/gCa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976456	25976456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	62	369	0	ENST00000435504.4:c.1089G>C	p.Glu363Asp	p.E363D	ENST00000435504		363	gaG/gaC																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26022280	26022280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	154	554	0	ENST00000435504.4:c.377G>A	p.Gly126Glu	p.G126E	ENST00000435504		126	gGa/gAa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249906	39249906	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	35	579	0	ENST00000402219.2:c.1663G>C	p.Asp555His	p.D555H	ENST00000402219	NM_005633.3	555	Gat/Cat																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026263	48026263	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142111387		P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	117	369	0	ENST00000234420.5:c.1141G>A	p.Glu381Lys	p.E381K	ENST00000234420	NM_000179.2	381	Gag/Aag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026377	48026377	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	30	479	0	ENST00000234420.5:c.1255C>G	p.Gln419Glu	p.Q419E	ENST00000234420	NM_000179.2	419	Cag/Gag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026927	48026927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	26	386	0	ENST00000234420.5:c.1805C>T	p.Ser602Leu	p.S602L	ENST00000234420	NM_000179.2	602	tCa/tTa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096642	178096642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	19	308	0	ENST00000397062.3:c.689C>T	p.Ser230Leu	p.S230L	ENST00000397062	NM_006164.4	230	tCa/tTa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190732639	190732639	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	25	387	0	ENST00000441310.2:c.2457G>C	p.Lys819Asn	p.K819N	ENST00000441310	NM_000534.4	819	aaG/aaC																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368470	225368470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	44	435	0	ENST00000264414.4:c.1276G>C	p.Asp426His	p.D426H	ENST00000264414	NM_003590.4	426	Gat/Cat																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023702	31023702	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	51	661	0	ENST00000375687.4:c.3187C>T	p.Gln1063Ter	p.Q1063*	ENST00000375687	NM_015338.5	1063	Cag/Tag																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62309528	62309529	+	missense_variant	Missense_Mutation	DNP	AG	AG	CA			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	62	825	1	ENST00000508582.2:c.1022_1023delinsCA	p.Lys341Thr	p.K341T	ENST00000508582		341	aAG/aCA																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44514662	44514662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	36	568	0	ENST00000291552.4:c.494G>A	p.Arg165Gln	p.R165Q	ENST00000291552	NM_006758.2	165	cGa/cAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41533795	41533795	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	50	405	0	ENST00000263253.7:c.1760+1G>A		p.X587_splice	ENST00000263253	NM_001429.3	587																																																																															
EP300	2033	MSKCC	GRCh37	22	41536169	41536169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	49	534	0	ENST00000263253.7:c.1786G>C	p.Asp596His	p.D596H	ENST00000263253	NM_001429.3	596	Gat/Cat																																																																														
EP300	2033	MSKCC	GRCh37	22	41536244	41536244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	64	446	1	ENST00000263253.7:c.1861G>A	p.Glu621Lys	p.E621K	ENST00000263253	NM_001429.3	621	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41573560	41573560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	39	776	0	ENST00000263253.7:c.5845C>T	p.Gln1949Ter	p.Q1949*	ENST00000263253	NM_001429.3	1949	Caa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	130	543	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	25	325	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	29	678	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	56	811	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55573323	55573323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	38	429	0	ENST00000288135.5:c.985G>A	p.Glu329Lys	p.E329K	ENST00000288135	NM_000222.2	329	Gaa/Aaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535346	66535346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	176	627	0	ENST00000273854.3:c.115C>G	p.Pro39Ala	p.P39A	ENST00000273854	NM_004439.5	39	Ccc/Gcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534494	187534494	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	85	333	0	ENST00000441802.2:c.9232G>A	p.Glu3078Lys	p.E3078K	ENST00000441802	NM_005245.3	3078	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	108	347	1				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112174929	112174929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	27	227	0	ENST00000257430.4:c.3638C>T	p.Ser1213Leu	p.S1213L	ENST00000257430	NM_000038.5	1213	tCa/tTa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046349	180046349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	178	644	0	ENST00000261937.6:c.2665G>A	p.Glu889Lys	p.E889K	ENST00000261937	NM_182925.4	889	Gag/Aag																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032045	26032045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	36	469	0	ENST00000244661.2:c.244G>C	p.Asp82His	p.D82H	ENST00000244661	NM_003537.3	82	Gat/Cat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631415	117631415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	107	327	0	ENST00000368508.3:c.6263C>T	p.Ser2088Phe	p.S2088F	ENST00000368508	NM_002944.2	2088	tCc/tTc																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137527318	137527318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	32	564	0	ENST00000367739.4:c.328G>A	p.Glu110Lys	p.E110K	ENST00000367739	NM_000416.2	110	Gaa/Aaa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004355	150004355	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	25	431	0	ENST00000253339.5:c.1870G>T	p.Glu624Ter	p.E624*	ENST00000253339		624	Gaa/Taa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963963	2963963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	188	693	0	ENST00000396946.4:c.1844C>G	p.Ser615Cys	p.S615C	ENST00000396946	NM_032415.4	615	tCc/tGc																																																																														
CDK6	1021	MSKCC	GRCh37	7	92244544	92244544	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	91	375	0	ENST00000265734.4:c.891C>G	p.His297Gln	p.H297Q	ENST00000265734	NM_001259.6	297	caC/caG																																																																														
BRAF	673	MSKCC	GRCh37	7	140439637	140439637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	37	444	0	ENST00000288602.6:c.2102G>C	p.Arg701Thr	p.R701T	ENST00000288602	NM_004333.4	701	aGa/aCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873492	151873492	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	73	545	0	ENST00000262189.6:c.9046C>T	p.Gln3016Ter	p.Q3016*	ENST00000262189	NM_170606.2	3016	Caa/Taa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968147	68968147	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	61	582	0	ENST00000288368.4:c.1176A>C	p.Gln392His	p.Q392H	ENST00000288368	NM_024870.2	392	caA/caC																																																																														
JAK2	3717	MSKCC	GRCh37	9	5064982	5064982	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	30	320	0	ENST00000381652.3:c.1156G>C	p.Glu386Gln	p.E386Q	ENST00000381652	NM_004972.3	386	Gaa/Caa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5066705	5066705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	20	373	0	ENST00000381652.3:c.1242G>C	p.Lys414Asn	p.K414N	ENST00000381652	NM_004972.3	414	aaG/aaC																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518342	8518342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	26	272	0	ENST00000356435.5:c.1049C>A	p.Pro350His	p.P350H	ENST00000356435		350	cCt/cAt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229611	98229611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	40	367	0	ENST00000331920.6:c.2347C>T	p.Arg783Trp	p.R783W	ENST00000331920	NM_000264.3	783	Cgg/Tgg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1325403	1325403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	157	577	0	ENST00000381566.1:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000381566		91	cGa/cAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928872	44928872	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	29	185	0	ENST00000377967.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000377967	NM_021140.2	658	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188513	11188513	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	92	428	0	ENST00000361445.4:c.5908del	p.Gln1970ArgfsTer7	p.Q1970Rfs*7	ENST00000361445	NM_004958.3	1970	Cag/ag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190747	11190747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	148	711	0	ENST00000361445.4:c.5452C>T	p.Arg1818Cys	p.R1818C	ENST00000361445	NM_004958.3	1818	Cgt/Tgt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259654	11259654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	123	504	0	ENST00000361445.4:c.4051G>A	p.Ala1351Thr	p.A1351T	ENST00000361445	NM_004958.3	1351	Gct/Act																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256367	16256367	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	125	525	0	ENST00000375759.3:c.3632T>C	p.Val1211Ala	p.V1211A	ENST00000375759	NM_015001.2	1211	gTa/gCa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023498	27023498	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	116	473	0	ENST00000324856.7:c.604T>A	p.Ser202Thr	p.S202T	ENST00000324856	NM_006015.4	202	Tct/Act																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101057	27101057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	172	707	0	ENST00000324856.7:c.4339C>T	p.Pro1447Ser	p.P1447S	ENST00000324856	NM_006015.4	1447	Cca/Tca																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598846	28598846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	182	793	0	ENST00000253063.3:c.406T>C	p.Phe136Leu	p.F136L	ENST00000253063	NM_031459.4	136	Ttt/Ctt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115261305	115261305	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	128	443	0	ENST00000438362.2:c.2416A>G	p.Ile806Val	p.I806V	ENST00000438362	NM_001242891.1	806	Atc/Gtc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843709	156843709	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	202	946	0	ENST00000524377.1:c.1135A>C	p.Met379Leu	p.M379L	ENST00000524377	NM_002529.3	379	Atg/Ctg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982424	201982424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	74	764	0	ENST00000359651.3:c.803A>G	p.His268Arg	p.H268R	ENST00000359651		268	cAc/cGc																																																																														
PARP1	142	MSKCC	GRCh37	1	226568891	226568891	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	33	386	0	ENST00000366794.5:c.1178T>C	p.Met393Thr	p.M393T	ENST00000366794	NM_001618.3	393	aTg/aCg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243778402	243778402	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	50	316	0	ENST00000263826.5:c.623del	p.Leu208Ter	p.L208*	ENST00000263826	NM_005465.4	208	tTa/ta																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	76	377	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
TET1	80312	MSKCC	GRCh37	10	70404669	70404669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	32	550	0	ENST00000373644.4:c.2183C>T	p.Ala728Val	p.A728V	ENST00000373644	NM_030625.2	728	gCt/gTt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925318	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	97	427	0	ENST00000543371.1:c.1402_1403del	p.Lys468ValfsTer8	p.K468Vfs*8	ENST00000543371	NM_001198531.1	465	agAAaa/agaa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	109	511	0	ENST00000334205.4:c.2287delC	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	70	686	6	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945661	71945661	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	121	409	0	ENST00000298229.2:c.2415+2T>C		p.X805_splice	ENST00000298229	NM_001567.3	805																																																																															
EED	8726	MSKCC	GRCh37	11	85988074	85988074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	54	243	0	ENST00000263360.6:c.1019T>C	p.Ile340Thr	p.I340T	ENST00000263360	NM_003797.3	340	aTa/aCa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343597	118343597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	108	399	0	ENST00000534358.1:c.1723G>A	p.Ala575Thr	p.A575T	ENST00000534358	NM_005933.3	575	Gcc/Acc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	117	450	3	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	85	338	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427234	49427234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	166	768	0	ENST00000301067.7:c.11254G>A	p.Ala3752Thr	p.A3752T	ENST00000301067	NM_003482.3	3752	Gca/Aca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445512	49445512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	188	857	0	ENST00000301067.7:c.1954C>T	p.Arg652Cys	p.R652C	ENST00000301067	NM_003482.3	652	Cgc/Tgc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784098	120784098	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	192	907	2	ENST00000257552.2:c.887delC	p.Pro296LeufsTer57	p.P296Lfs*57	ENST00000257552	NM_002442.3	296	cCt/ct																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	150	732	7	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
POLE	5426	MSKCC	GRCh37	12	133201368	133201368	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	147	763	0	ENST00000320574.5:c.6776G>T	p.Arg2259Leu	p.R2259L	ENST00000320574	NM_006231.2	2259	cGg/cTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	179	801	3	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012432	29012432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	106	499	0	ENST00000282397.4:c.439C>T	p.His147Tyr	p.H147Y	ENST00000282397	NM_002019.4	147	Cac/Tac																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	82	348	0	ENST00000282397.4:c.166delG	p.Glu56LysfsTer12	p.E56Kfs*12	ENST00000282397	NM_002019.4	56	Gaa/aa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915089	32915090	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	90	496	0	ENST00000380152.3:c.6600_6601del	p.Ser2201Ter	p.S2201*	ENST00000380152		2199	acTTtt/actt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	80	261	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066844	30066844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	109	514	0	ENST00000331968.5:c.2287T>C	p.Ser763Pro	p.S763P	ENST00000331968	NM_002742.2	763	Tct/Cct																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066865	30066865	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	111	542	0	ENST00000331968.5:c.2266A>T	p.Arg756Trp	p.R756W	ENST00000331968	NM_002742.2	756	Agg/Tgg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560242	95560242	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	15	289	0	ENST00000343455.3:c.5347C>T	p.Gln1783Ter	p.Q1783*	ENST00000343455	NM_177438.2	1783	Caa/Taa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714075	43714075	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	177	686	2	ENST00000382044.4:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000382044	NM_001141980.1	1360	Cga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	106	434	0	ENST00000558401.1:c.3G>T	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atT																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	117	456	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
B2M	567	MSKCC	GRCh37	15	45007896	45007897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	88	299	0	ENST00000558401.1:c.346+1dup		p.W115fs	ENST00000558401	NM_004048.2	115	tgg/tGgg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	177	772	3	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2104393	2104393	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	164	700	0	ENST00000219476.3:c.433G>C	p.Ala145Pro	p.A145P	ENST00000219476	NM_000548.3	145	Gcc/Ccc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351327	89351327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	197	914	0	ENST00000301030.4:c.1623G>T	p.Gln541His	p.Q541H	ENST00000301030	NM_001256183.1	541	caG/caT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965000	15965002	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	48	507	1	ENST00000268712.3:c.5594_5596del	p.Gln1865del	p.Q1865del	ENST00000268712	NM_006311.3	1865	cAGCta/cta																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	129	563	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
NF1	4763	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	59	213	1	ENST00000358273.4:c.1882delT	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	29	507	2	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885980	59885980	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	113	420	0	ENST00000259008.2:c.766A>T	p.Ile256Phe	p.I256F	ENST00000259008	NM_032043.2	256	Att/Ttt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78936338	78936338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	134	717	0	ENST00000306801.3:c.3770C>T	p.Thr1257Met	p.T1257M	ENST00000306801	NM_020761.2	1257	aCg/aTg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56348561	56348561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	66	252	0	ENST00000348428.3:c.374del	p.Pro125GlnfsTer3	p.P125Qfs*3	ENST00000348428	NM_006785.3	123	agC/ag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222058	2222058	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	165	798	0	ENST00000398665.3:c.2890A>G	p.Thr964Ala	p.T964A	ENST00000398665	NM_032482.2	964	Acc/Gcc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210754	5210754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	158	693	0	ENST00000357368.4:c.5297G>A	p.Arg1766His	p.R1766H	ENST00000357368	NM_002850.3	1766	cGc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	17	171	1	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11095029	11095029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	193	847	0	ENST00000344626.4:c.202A>G	p.Asn68Asp	p.N68D	ENST00000344626	NM_003072.3	68	Aac/Gac																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627694	14627694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	147	680	0	ENST00000254322.2:c.376G>A	p.Asp126Asn	p.D126N	ENST00000254322	NM_006145.1	126	Gac/Aac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	91	821	0	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	181	885	4	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	184	777	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868346	45868346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	187	850	0	ENST00000391945.4:c.431C>T	p.Ala144Val	p.A144V	ENST00000391945	NM_000400.3	144	gCg/gTg																																																																														
BBC3	27113	MSKCC	GRCh37	19	47735772	47735772	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	143	613	0	ENST00000449228.1:c.88G>A	p.Gly30Ser	p.G30S	ENST00000449228	NM_001127240.2	30	Ggc/Agc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716302	52716302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	142	630	0	ENST00000322088.6:c.746G>A	p.Arg249His	p.R249H	ENST00000322088	NM_014225.5	249	cGc/cAc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26022301	26022301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	124	497	0	ENST00000435504.4:c.356A>G	p.Asp119Gly	p.D119G	ENST00000435504		119	gAt/gGt																																																																														
ALK	238	MSKCC	GRCh37	2	30143336	30143336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	149	650	0	ENST00000389048.3:c.190T>C	p.Phe64Leu	p.F64L	ENST00000389048	NM_004304.4	64	Ttc/Ctc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47606178	47606181	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	67	316	0	ENST00000263735.4:c.644_647del	p.Tyr215LeufsTer18	p.Y215Lfs*18	ENST00000263735	NM_002354.2	214	taTTAT/ta																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99179993	99179993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	155	701	0	ENST00000074304.5:c.1936G>A	p.Asp646Asn	p.D646N	ENST00000074304	NM_001134224.1	646	Gac/Aac																																																																														
CASP8	841	MSKCC	GRCh37	2	202131193	202131193	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	64	296	0	ENST00000358485.4:c.161T>G	p.Leu54Arg	p.L54R	ENST00000358485	NM_001080125.1	54	cTc/cGc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812292	212812292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	95	268	0	ENST00000342788.4:c.284G>A	p.Arg95His	p.R95H	ENST00000342788	NM_005235.2	95	cGt/cAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	T	T	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	66	405	1	ENST00000342788.4:c.1delA	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																														
INHA	3623	MSKCC	GRCh37	2	220437223	220437223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	171	901	0	ENST00000243786.2:c.132del	p.Ala45ArgfsTer2	p.A45Rfs*2	ENST00000243786	NM_002191.3	43	Ccc/cc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	58	345	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	111	528	0	ENST00000373198.4:c.3281C>T	p.Pro1094Leu	p.P1094L	ENST00000373198	NM_133170.3	1094	cCg/cTg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42842590	42842590	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	151	644	1	ENST00000398585.3:c.1267delG	p.Ala423ProfsTer12	p.A423Pfs*12	ENST00000398585	NM_001135099.1	423	Gcc/cc																																																																														
EP300	2033	MSKCC	GRCh37	22	41573608	41573608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	179	853	0	ENST00000263253.7:c.5893A>G	p.Met1965Val	p.M1965V	ENST00000263253	NM_001429.3	1965	Atg/Gtg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	185	332	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090432	37090432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	84	505	0	ENST00000231790.2:c.2027T>A	p.Leu676His	p.L676H	ENST00000231790	NM_000249.3	676	cTc/cAc																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180365	38180365	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	52	818	0	ENST00000396334.3:c.213C>G	p.Tyr71Ter	p.Y71*	ENST00000396334	NM_002468.4	71	taC/taG																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934752	49934752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	154	719	1	ENST00000296474.3:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000296474	NM_002447.2	715	cGg/cAg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597387	52597389	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	113	541	0	ENST00000394830.3:c.3921_3923del	p.Glu1307del	p.E1307del	ENST00000394830	NM_018313.4	1307	gaAGAt/gat																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52649393	52649393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	129	543	0	ENST00000394830.3:c.1898A>G	p.Asp633Gly	p.D633G	ENST00000394830	NM_018313.4	633	gAc/gGc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52663007	52663007	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	55	268	0	ENST00000394830.3:c.1346A>G	p.Glu449Gly	p.E449G	ENST00000394830	NM_018313.4	449	gAg/gGg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682400	52682400	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	64	266	0	ENST00000394830.3:c.773del	p.Asn258MetfsTer25	p.N258Mfs*25	ENST00000394830	NM_018313.4	258	aAt/at																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186502404	186502405	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	80	355	0	ENST00000323963.5:c.131_132delTC	p.Leu44ProfsTer10	p.L44Pfs*10	ENST00000323963		43	TCt/t																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1962801	1962801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	108	481	0	ENST00000382891.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000382891	NM_133335.3	1099	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	105	405	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521091	187521091	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	107	435	0	ENST00000441802.2:c.12064T>G	p.Cys4022Gly	p.C4022G	ENST00000441802	NM_005245.3	4022	Tgc/Ggc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	128	560	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1264618	1264618	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	137	757	0	ENST00000310581.5:c.2744del	p.Gly915ValfsTer66	p.G915Vfs*66	ENST00000310581	NM_198253.2	915	gGt/gt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161240	56161240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	73	371	1	ENST00000399503.3:c.1109C>A	p.Pro370His	p.P370H	ENST00000399503	NM_005921.1	370	cCt/cAt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56176582	56176582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	109	346	0	ENST00000399503.3:c.2132A>G	p.Lys711Arg	p.K711R	ENST00000399503	NM_005921.1	711	aAa/aGa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79966113	79966114	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	83	357	0	ENST00000265081.6:c.781dup	p.Glu261GlyfsTer43	p.E261Gfs*43	ENST00000265081	NM_002439.4	259	-/G																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	96	377	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175969	112175970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	41	259	0	ENST00000257430.4:c.4682dupA	p.Asp1562GlyfsTer5	p.D1562Gfs*5	ENST00000257430	NM_000038.5	1560	gaa/gAaa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	151	768	6	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681766	30681766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	149	604	0	ENST00000376406.3:c.331del	p.Val111Ter	p.V111*	ENST00000376406	NM_014641.2	111	Gtg/tg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166275	32166275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	150	682	0	ENST00000375023.3:c.4679C>T	p.Ala1560Val	p.A1560V	ENST00000375023	NM_004557.3	1560	gCg/gTg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	168	821	2	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
SESN1	27244	MSKCC	GRCh37	6	109415236	109415236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	171	620	0	ENST00000436639.2:c.41G>A	p.Cys14Tyr	p.C14Y	ENST00000436639	NM_014454.2	14	tGc/tAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706922	117706922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	105	440	0	ENST00000368508.3:c.2228C>A	p.Pro743His	p.P743H	ENST00000368508	NM_002944.2	743	cCc/cAc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	133	693	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13949264	13949264	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	61	244	0	ENST00000405192.2:c.864del	p.Lys288AsnfsTer32	p.K288Nfs*32	ENST00000405192	NM_001163147.1	288	aaA/aa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467637	50467637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	86	406	2	ENST00000331340.3:c.872C>T	p.Thr291Met	p.T291M	ENST00000331340	NM_006060.4	291	aCg/aTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	88	520	0	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151851177	151851177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141966811		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	75	306	0	ENST00000262189.6:c.12194C>T	p.Ala4065Val	p.A4065V	ENST00000262189	NM_170606.2	4065	gCg/gTg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370885	55370885	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	126	639	0	ENST00000297316.4:c.187A>G	p.Lys63Glu	p.K63E	ENST00000297316	NM_022454.3	63	Aag/Gag																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	67	258	3	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971198	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	89	357	0	ENST00000304494.5:c.160_162delATG	p.Met54del	p.M54del	ENST00000304494	NM_000077.4	54	ATG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971198	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	89	357	0	ENST00000304494.5:c.160_162delATG	p.Met54del	p.M54del	ENST00000304494	NM_000077.4	54	ATG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971196	21971198	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	89	357	0	ENST00000304494.5:c.160_162delATG	p.Met54del	p.M54del	ENST00000304494	NM_000077.4	54	ATG/-																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231257	98231257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	169	657	0	ENST00000331920.6:c.2026T>C	p.Tyr676His	p.Y676H	ENST00000331920	NM_000264.3	676	Tac/Cac																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912128	127912128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	70	309	0	ENST00000373547.4:c.742T>C	p.Phe248Leu	p.F248L	ENST00000373547	NM_002721.4	248	Ttt/Ctt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028857	47028857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	124	682	1	ENST00000329236.7:c.161A>G	p.Lys54Arg	p.K54R	ENST00000329236	NM_001204466.1	54	aAg/aGg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	180	843	0	ENST00000220592.5:c.1807G>C	p.Ala603Pro	p.A603P	ENST00000220592	NM_012154.3	603	Gcc/Ccc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026450	6026450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	21	78	0	ENST00000265849.7:c.1946G>T	p.Arg649Met	p.R649M	ENST00000265849	NM_000535.5	649	aGg/aTg																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15833927	15833927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	10	40	0	ENST00000307771.7:c.685G>A	p.Glu229Lys	p.E229K	ENST00000307771	NM_005089.3	229	Gag/Aag																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554343	141554344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	169	843	0	ENST00000220592.5:c.1807_1808insA	p.Ala603AspfsTer71	p.A603Dfs*71	ENST00000220592	NM_012154.3	603	gcc/gAcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578404	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0038554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	459	560	1	ENST00000269305.4:c.526_527delinsCT	p.Cys176Leu	p.C176L	ENST00000269305	NM_001126112.2	176	TGc/CTc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38272410	38272410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	132	341	0	ENST00000425967.3:c.1957C>G	p.Arg653Gly	p.R653G	ENST00000425967	NM_001174067.1	653	Cga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	38	426	1	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	24	621	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380262	25380262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	39	439	0	ENST00000256078.4:c.196G>T	p.Ala66Ser	p.A66S	ENST00000256078	NM_033360.2	66	Gca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	284	657	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279573	123279573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	201	630	0	ENST00000358487.5:c.859C>T	p.His287Tyr	p.H287Y	ENST00000358487	NM_000141.4	287	Cac/Tac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343547	118343547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	83	343	0	ENST00000534358.1:c.1673C>A	p.Ser558Tyr	p.S558Y	ENST00000534358	NM_005933.3	558	tCc/tAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133219414	133219414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	435	697	0	ENST00000320574.5:c.4720G>T	p.Ala1574Ser	p.A1574S	ENST00000320574	NM_006231.2	1574	Gcc/Tcc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984532	72984532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	178	666	1	ENST00000268489.5:c.3052A>G	p.Ile1018Val	p.I1018V	ENST00000268489	NM_006885.3	1018	Atc/Gtc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119034	3119034	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	114	651	0	ENST00000078429.4:c.718G>C	p.Val240Leu	p.V240L	ENST00000078429	NM_002067.2	240	Gtg/Ctg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599884	10599884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	338	735	0	ENST00000171111.5:c.1692del	p.Arg565GlufsTer30	p.R565Efs*30	ENST00000171111	NM_203500.1	564	ggG/gg																																																																														
NF2	4771	MSKCC	GRCh37	22	30035203	30035203	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	55	414	0	ENST00000338641.4:c.363+2T>C		p.X121_splice	ENST00000338641	NM_000268.3	121																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928010	178928010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	27	332	1	ENST00000263967.3:c.1288T>C	p.Phe430Leu	p.F430L	ENST00000263967	NM_006218.2	430	Ttt/Ctt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332838	153332838	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	277	360	0	ENST00000281708.4:c.118G>T	p.Glu40Ter	p.E40*	ENST00000281708	NM_033632.3	40	Gaa/Taa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30679879	30679879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	294	447	0	ENST00000376406.3:c.1840G>A	p.Val614Ile	p.V614I	ENST00000376406	NM_014641.2	614	Gtt/Att																																																																														
PARK2	5071	MSKCC	GRCh37	6	161969906	161969906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	283	516	0	ENST00000366898.1:c.1063G>T	p.Gly355Cys	p.G355C	ENST00000366898	NM_004562.2	355	Ggc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	78	421	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	17	301	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	13	560	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395776	45395776	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	28	365	0	ENST00000262160.6:c.358C>T	p.Arg120Ter	p.R120*	ENST00000262160	NM_005901.5	120	Cga/Tga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	148	841	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562621	21562621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	202	394	0	ENST00000382592.4:c.1298C>T	p.Thr433Met	p.T433M	ENST00000382592	NM_014572.2	433	aCg/aTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119871	70119872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	131	743	0	ENST00000245479.2:c.875dup	p.Asn292LysfsTer4	p.N292Kfs*4	ENST00000245479	NM_000346.3	291	-/A																																																																														
APC	324	MSKCC	GRCh37	5	112173597	112173597	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	64	271	0	ENST00000257430.4:c.2306T>G	p.Leu769Ter	p.L769*	ENST00000257430	NM_000038.5	769	tTa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112175763	112175764	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	G			P-0038684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	40	340	0	ENST00000257430.4:c.4472_4473delinsG	p.Phe1491TrpfsTer16	p.F1491Wfs*16	ENST00000257430	NM_000038.5	1491	tTT/tG																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120000	70120001	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	20	151	0	ENST00000245479.2:c.1003dupT	p.Trp335LeufsTer243	p.W335Lfs*243	ENST00000245479	NM_000346.3	334	-/T																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	59	517	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	70	653	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980384	201980385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0038719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	90	772	0	ENST00000359651.3:c.121_122dup	p.Leu42TyrfsTer2	p.L42Yfs*2	ENST00000359651		40	-/GT																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532586	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0038719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	79	853	0	ENST00000307078.5:c.1993_1994del	p.Gly665GlnfsTer41	p.G665Qfs*41	ENST00000307078	NM_004655.3	665	GGc/c																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120225	70120226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	59	667	0	ENST00000245479.2:c.1228dup	p.Gln410ProfsTer168	p.Q410Pfs*168	ENST00000245479	NM_000346.3	409	-/C																																																																														
CIC	23152	MSKCC	GRCh37	19	42792076	42792076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	90	694	1	ENST00000575354.2:c.880G>A	p.Glu294Lys	p.E294K	ENST00000575354	NM_015125.3	294	Gag/Aag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372125	55372125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	59	371	0	ENST00000297316.4:c.815C>T	p.Pro272Leu	p.P272L	ENST00000297316	NM_022454.3	272	cCc/cTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0038721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	212	723	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032566	47032566	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	88	731	1	ENST00000329236.7:c.241G>T	p.Glu81Ter	p.E81*	ENST00000329236	NM_001204466.1	81	Gag/Tag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562785	95562785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	57	483	0	ENST00000343455.3:c.4472G>C	p.Ser1491Thr	p.S1491T	ENST00000343455	NM_177438.2	1491	aGt/aCt																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38545389	38545389	+	start_lost	Translation_Start_Site	SNP	G	G	C			P-0038721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	48	531	0	ENST00000299084.4:c.3G>C	p.Met1?	p.M1?	ENST00000299084	NM_152594.2	1	atG/atC																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943716	9943716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	92	766	0	ENST00000330684.3:c.1225G>A	p.Val409Ile	p.V409I	ENST00000330684	NM_001134407.1	409	Gtc/Atc																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349185	11349226	+	inframe_deletion	In_Frame_Del	DEL	CGGGGGCCGGGGCCGGGACCGCGGGGCACGGCCGCGGGCGCG	CGGGGGCCGGGGCCGGGACCGCGGGGCACGGCCGCGGGCGCG	-			P-0038721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	28	110	0	ENST00000332029.2:c.110_151del	p.Ala37_Pro50del	p.A37_P50del	ENST00000332029	NM_003745.1	37	gCGCGCCCGCGGCCGTGCCCCGCGGTCCCGGCCCCGGCCCCCGgc/ggc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245506	153245506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	43	596	0	ENST00000281708.4:c.1685C>T	p.Ser562Leu	p.S562L	ENST00000281708	NM_033632.3	562	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	202	236	2				ENST00000310581	NM_198253.2																																																																																
PAK7	57144	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	224	476	0	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																																																														
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	271	423	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980832	40980832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	297	554	0	ENST00000373198.4:c.1654C>T	p.Leu552Phe	p.L552F	ENST00000373198	NM_133170.3	552	Ctc/Ttc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641144	117641144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	391	625	1	ENST00000368508.3:c.5827G>A	p.Glu1943Lys	p.E1943K	ENST00000368508	NM_002944.2	1943	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	339	581	0	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																														
IRF4	3662	MSKCC	GRCh37	6	401556	401556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	264	494	0	ENST00000380956.4:c.878C>T	p.Pro293Leu	p.P293L	ENST00000380956	NM_001195286.1	293	cCc/cTc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117862964	117862964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	259	485	0	ENST00000297338.2:c.1513C>T	p.Pro505Ser	p.P505S	ENST00000297338	NM_006265.2	505	Ccc/Tcc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	311	513	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332741	153332741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	279	517	0	ENST00000281708.4:c.215C>T	p.Ser72Phe	p.S72F	ENST00000281708	NM_033632.3	72	tCc/tTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656259	18656259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201569993		P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	208	383	1	ENST00000266497.5:c.2938C>T	p.His980Tyr	p.H980Y	ENST00000266497		980	Cat/Tat																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440680	56440680	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	324	607	0	ENST00000407977.2:c.538C>T	p.Gln180Ter	p.Q180*	ENST00000407977		180	Caa/Taa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942153	81942153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	287	496	0	ENST00000359376.3:c.1690C>T	p.Arg564Trp	p.R564W	ENST00000359376	NM_002661.3	564	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604760	48604760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	231	429	0	ENST00000342988.3:c.1582C>T	p.His528Tyr	p.H528Y	ENST00000342988	NM_005359.5	528	Cac/Tac																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1863	689	678	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
RAC1	5879	MSKCC	GRCh37	7	6414397	6414397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	132	117	0	ENST00000356142.4:c.31G>A	p.Asp11Asn	p.D11N	ENST00000356142	NM_018890.3	11	Gac/Aac																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966462	25966462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	379	733	0	ENST00000435504.4:c.2744C>T	p.Pro915Leu	p.P915L	ENST00000435504		915	cCa/cTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726698	88726698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	677	460	2	ENST00000360948.2:c.346C>T	p.Arg116Trp	p.R116W	ENST00000360948	NM_001012338.2	116	Cgg/Tgg																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349229	11349229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	47	125	0	ENST00000332029.2:c.107C>T	p.Pro36Leu	p.P36L	ENST00000332029	NM_003745.1	36	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992756	72992756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	278	614	0	ENST00000268489.5:c.1289C>T	p.Ser430Phe	p.S430F	ENST00000268489	NM_006885.3	430	tCc/tTc																																																																														
SETD8	387893	MSKCC	GRCh37	12	123879672	123879672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	41	175	0	ENST00000330479.4:c.368C>T	p.Pro123Leu	p.P123L	ENST00000330479	NM_020382.3	123	cCc/cTc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797859	32797859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	200	392	0	ENST00000374899.4:c.1643C>T	p.Ser548Leu	p.S548L	ENST00000374899	NM_018833.2	548	tCa/tTa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458492	120458492	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	275	594	1	ENST00000256646.2:c.6853C>T	p.Gln2285Ter	p.Q2285*	ENST00000256646	NM_024408.3	2285	Cag/Tag																																																																														
AKT3	10000	MSKCC	GRCh37	1	243858913	243858913	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	224	406	0	ENST00000263826.5:c.152T>G	p.Leu51Arg	p.L51R	ENST00000263826	NM_005465.4	51	cTc/cGc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518153	187518153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	269	441	0	ENST00000441802.2:c.12541G>A	p.Glu4181Lys	p.E4181K	ENST00000441802	NM_005245.3	4181	Gaa/Aaa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436006	110436006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	389	615	0	ENST00000375856.3:c.2395C>T	p.Pro799Ser	p.P799S	ENST00000375856	NM_003749.2	799	Ccc/Tcc																																																																														
CALR	811	MSKCC	GRCh37	19	13050388	13050388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	391	527	0	ENST00000316448.5:c.340C>T	p.Pro114Ser	p.P114S	ENST00000316448	NM_004343.3	114	Cct/Tct																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199360	16199360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	237	439	0	ENST00000375759.3:c.133G>A	p.Gly45Arg	p.G45R	ENST00000375759	NM_015001.2	45	Gga/Aga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255554	16255554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	263	482	0	ENST00000375759.3:c.2819C>T	p.Pro940Leu	p.P940L	ENST00000375759	NM_015001.2	940	cCa/cTa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65304230	65304231	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	193	405	1	ENST00000342505.4:c.2884_2885delinsAA	p.Gly962Lys	p.G962K	ENST00000342505	NM_002227.2	962	GGa/AAa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459052	120459053	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	278	614	0	ENST00000256646.2:c.6292_6293delinsTT	p.Pro2098Leu	p.P2098L	ENST00000256646	NM_024408.3	2098	CCa/TTa																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206661284	206661284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	241	553	0	ENST00000367120.3:c.1650G>A	p.Met550Ile	p.M550I	ENST00000367120	NM_014002.3	550	atG/atA																																																																														
PARP1	142	MSKCC	GRCh37	1	226555267	226555268	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	193	506	1	ENST00000366794.5:c.2319_2320delinsAA	p.Ala774Thr	p.A774T	ENST00000366794	NM_001618.3	773	gtGGcc/gtAAcc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137199	64137199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	309	464	1	ENST00000334205.4:c.1631G>A	p.Gly544Glu	p.G544E	ENST00000334205	NM_003942.2	544	gGg/gAg																																																																														
CCND1	595	MSKCC	GRCh37	11	69465960	69465961	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1903	267	601	0	ENST00000227507.2:c.798_799delinsAA	p.Met266_Asp267delinsIleAsn	p.M266_D267delinsIN	ENST00000227507	NM_053056.2	266	atGGac/atAAac																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195527	102195527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2429	249	485	0	ENST00000263464.3:c.287T>C	p.Val96Ala	p.V96A	ENST00000263464	NM_001165.4	96	gTt/gCt																																																																														
BIRC3	330	MSKCC	GRCh37	11	102207494	102207494	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2059	214	421	0	ENST00000263464.3:c.1583A>G	p.Gln528Arg	p.Q528R	ENST00000263464	NM_001165.4	528	cAa/cGa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377289	118377290	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	254	444	1	ENST00000534358.1:c.10682_10683delinsTT	p.Ser3561Phe	p.S3561F	ENST00000534358	NM_005933.3	3561	tCC/tTT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431162	49431163	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	280	573	2	ENST00000301067.7:c.9976_9977delinsTT	p.Pro3326Phe	p.P3326F	ENST00000301067	NM_003482.3	3326	CCc/TTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431645	49431645	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	288	677	0	ENST00000301067.7:c.9494A>G	p.Asp3165Gly	p.D3165G	ENST00000301067	NM_003482.3	3165	gAt/gGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440432	49440432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	299	683	0	ENST00000301067.7:c.4378C>A	p.Pro1460Thr	p.P1460T	ENST00000301067	NM_003482.3	1460	Cca/Aca																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859435	57859435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	278	605	0	ENST00000228682.2:c.580C>T	p.Pro194Ser	p.P194S	ENST00000228682	NM_005269.2	194	Ccc/Tcc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30095744	30095744	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	258	415	0	ENST00000331968.5:c.1744C>G	p.Gln582Glu	p.Q582E	ENST00000331968	NM_002742.2	582	Cag/Gag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562614	95562615	+	missense_variant	Missense_Mutation	DNP	AA	AA	GT			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	226	416	0	ENST00000343455.3:c.4642_4643delinsAC	p.Leu1548Thr	p.L1548T	ENST00000343455	NM_177438.2	1548	TTg/ACg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38545389	38545389	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	393	416	0	ENST00000299084.4:c.3G>T	p.Met1?	p.M1?	ENST00000299084	NM_152594.2	1	atG/atT																																																																														
B2M	567	MSKCC	GRCh37	15	45007647	45007648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	176	288	0	ENST00000558401.1:c.95dup	p.His33SerfsTer24	p.H33Sfs*24	ENST00000558401	NM_004048.2	32	cgt/cGgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9927964	9927964	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	178	357	0	ENST00000330684.3:c.1775A>T	p.Lys592Ile	p.K592I	ENST00000330684	NM_001134407.1	592	aAa/aTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984772	72984772	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	289	583	0	ENST00000268489.5:c.2812A>C	p.Asn938His	p.N938H	ENST00000268489	NM_006885.3	938	Aac/Cac																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11984794	11984795	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	226	461	0	ENST00000353533.5:c.340_341delinsAA	p.Gly114Asn	p.G114N	ENST00000353533	NM_003010.3	114	GGt/AAt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40474367	40474368	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	347	505	1	ENST00000264657.5:c.2033_2034delinsGT	p.Pro678Arg	p.P678R	ENST00000264657	NM_139276.2	678	cCC/cGT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096936	11096937	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	322	699	0	ENST00000344626.4:c.427_428delinsTT	p.Pro143Phe	p.P143F	ENST00000344626	NM_003072.3	143	CCc/TTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11106982	11106982	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	334	687	0	ENST00000344626.4:c.1687A>T	p.Asn563Tyr	p.N563Y	ENST00000344626	NM_003072.3	563	Aac/Tac																																																																														
UPF1	5976	MSKCC	GRCh37	19	18960979	18960979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	250	580	0	ENST00000262803.5:c.557G>T	p.Cys186Phe	p.C186F	ENST00000262803	NM_002911.3	186	tGc/tTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211694	36211695	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	251	559	1	ENST00000222270.7:c.1445_1446delinsAA	p.Arg482Gln	p.R482Q	ENST00000222270	NM_014727.1	482	cGG/cAA																																																																														
AXL	558	MSKCC	GRCh37	19	41763495	41763495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	278	510	0	ENST00000301178.4:c.2294G>A	p.Gly765Glu	p.G765E	ENST00000301178	NM_021913.4	765	gGa/gAa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190708793	190708793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	244	371	0	ENST00000441310.2:c.686C>T	p.Ser229Phe	p.S229F	ENST00000441310	NM_000534.4	229	tCt/tTt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561399	9561399	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	306	569	0	ENST00000353224.5:c.383T>A	p.Phe128Tyr	p.F128Y	ENST00000353224	NM_177990.2	128	tTc/tAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024239	31024256	+	inframe_deletion	In_Frame_Del	DEL	GATCAGAAGGAAGTCCGT	GATCAGAAGGAAGTCCGT	-			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	248	491	0	ENST00000375687.4:c.3725_3742del	p.Asp1242_Arg1247del	p.D1242_R1247del	ENST00000375687	NM_015338.5	1242	GATCAGAAGGAAGTCCGT/-																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375066	31375066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	271	486	0	ENST00000328111.2:c.463G>A	p.Gly155Arg	p.G155R	ENST00000328111	NM_006892.3	155	Gga/Aga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747109	40747109	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	235	552	0	ENST00000373198.4:c.2973G>A	p.Trp991Ter	p.W991*	ENST00000373198	NM_133170.3	991	tgG/tgA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944412	40944412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	282	569	0	ENST00000373198.4:c.2090C>T	p.Pro697Leu	p.P697L	ENST00000373198	NM_133170.3	697	cCc/cTc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54948513	54948513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	296	460	0	ENST00000312783.6:c.805G>A	p.Glu269Lys	p.E269K	ENST00000312783	NM_198436.1	269	Gag/Aag																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434227	12434227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	257	411	0	ENST00000287820.6:c.595C>T	p.Leu199Phe	p.L199F	ENST00000287820	NM_015869.4	199	Ctt/Ttt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37091980	37091980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	195	403	0	ENST00000231790.2:c.2107G>A	p.Glu703Lys	p.E703K	ENST00000231790	NM_000249.3	703	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620674	52620675	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	189	305	1	ENST00000394830.3:c.3078_3079delinsTT	p.Arg1027Ter	p.R1027*	ENST00000394830	NM_018313.4	1026	ttCCga/ttTTga																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205146	128205147	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	306	647	0	ENST00000341105.2:c.294_295delinsAA	p.Asp99Asn	p.D99N	ENST00000341105	NM_032638.4	98	ctGGac/ctAAac																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185169088	185169088	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	247	405	0	ENST00000265026.3:c.1183C>T	p.Arg395Ter	p.R395*	ENST00000265026	NM_004721.4	395	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873703	35873703	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	167	343	0	ENST00000303115.3:c.659G>A	p.Trp220Ter	p.W220*	ENST00000303115	NM_002185.3	220	tGg/tAg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56167766	56167766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	254	369	0	ENST00000399503.3:c.1331C>T	p.Pro444Leu	p.P444L	ENST00000399503	NM_005921.1	444	cCt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112174167	112174167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	229	368	0	ENST00000257430.4:c.2876C>T	p.Ser959Phe	p.S959F	ENST00000257430	NM_000038.5	959	tCt/tTt																																																																														
APC	324	MSKCC	GRCh37	5	112176705	112176705	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	173	310	0	ENST00000257430.4:c.5414T>A	p.Phe1805Tyr	p.F1805Y	ENST00000257430	NM_000038.5	1805	tTc/tAc																																																																														
APC	324	MSKCC	GRCh37	5	112178193	112178193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	262	370	0	ENST00000257430.4:c.6902G>A	p.Arg2301Lys	p.R2301K	ENST00000257430	NM_000038.5	2301	aGa/aAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94124428	94124428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	189	345	0	ENST00000369303.4:c.155C>T	p.Pro52Leu	p.P52L	ENST00000369303	NM_004440.3	52	cCc/cTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94124447	94124447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	212	380	0	ENST00000369303.4:c.136G>A	p.Glu46Lys	p.E46K	ENST00000369303	NM_004440.3	46	Gag/Aag																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554343	106554343	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	214	424	0	ENST00000369096.4:c.1871T>C	p.Val624Ala	p.V624A	ENST00000369096	NM_001198.3	624	gTa/gCa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678991	117678991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	203	352	0	ENST00000368508.3:c.3830C>T	p.Ser1277Phe	p.S1277F	ENST00000368508	NM_002944.2	1277	tCt/tTt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971184	13971184	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	209	425	0	ENST00000405192.2:c.745A>T	p.Ser249Cys	p.S249C	ENST00000405192	NM_001163147.1	249	Agc/Tgc																																																																														
SMO	6608	MSKCC	GRCh37	7	128843399	128843399	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	216	595	0	ENST00000249373.3:c.506del	p.Cys169SerfsTer133	p.C169Sfs*133	ENST00000249373	NM_005631.4	169	tGc/tc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152027719	152027719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	359	628	0	ENST00000262189.6:c.356C>A	p.Ser119Tyr	p.S119Y	ENST00000262189	NM_170606.2	119	tCc/tAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68939456	68939456	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	543	357	0	ENST00000288368.4:c.442-1G>A		p.X148_splice	ENST00000288368	NM_024870.2	148																																																																															
PREX2	80243	MSKCC	GRCh37	8	69020350	69020350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	647	383	0	ENST00000288368.4:c.2722C>T	p.Arg908Cys	p.R908C	ENST00000288368	NM_024870.2	908	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500993	8500993	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	203	385	0	ENST00000356435.5:c.1889G>A	p.Trp630Ter	p.W630*	ENST00000356435		630	tGg/tAg																																																																														
TEK	7010	MSKCC	GRCh37	9	27168535	27168535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	247	543	0	ENST00000380036.4:c.407G>T	p.Gly136Val	p.G136V	ENST00000380036	NM_000459.3	136	gGa/gTa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248075	110248075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	297	488	2	ENST00000374672.4:c.1397C>T	p.Ser466Phe	p.S466F	ENST00000374672	NM_004235.4	466	tCc/tTc																																																																														
ABL1	25	MSKCC	GRCh37	9	133753879	133753879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	309	575	0	ENST00000318560.5:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000318560	NM_005157.4	450	Gag/Aag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038724-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			518	96	420	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928219	178928219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038724-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	150	518	0	ENST00000263967.3:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000263967	NM_006218.2	469	Gaa/Aaa																																																																														
CDH1	999	MSKCC	GRCh37	16	68867222	68867223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038724-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	197	623	0	ENST00000261769.5:c.2470dupG	p.Ala824GlyfsTer5	p.A824Gfs*5	ENST00000261769	NM_004360.3	823	-/G																																																																														
YES1	7525	MSKCC	GRCh37	18	743029	743029	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038724-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	128	694	0	ENST00000314574.4:c.949T>G	p.Phe317Val	p.F317V	ENST00000314574	NM_005433.3	317	Ttc/Gtc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	138	529	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0038726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	43	374	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	159	720	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0038726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	157	822	0	ENST00000269305.4:c.919+1G>C		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
SOX9	6662	MSKCC	GRCh37	17	70120100	70120100	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	13	76	0	ENST00000245479.2:c.1102C>T	p.Gln368Ter	p.Q368*	ENST00000245479	NM_000346.3	368	Cag/Tag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87636257	87636257	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	125	644	1	ENST00000277120.3:c.2422C>T	p.Arg808Ter	p.R808*	ENST00000277120		808	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	33	765	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	59	667	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	33	574	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370985	55370985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	37	798	0	ENST00000297316.4:c.287C>G	p.Ala96Gly	p.A96G	ENST00000297316	NM_022454.3	96	gCc/gGc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622369	1622369	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143406385		P-0038744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	48	1038	1	ENST00000344749.5:c.595G>A	p.Ala199Thr	p.A199T	ENST00000344749	NM_001136139.2	199	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089603	27089603	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	117	881	0	ENST00000324856.7:c.2561del	p.Pro854LeufsTer5	p.P854Lfs*5	ENST00000324856	NM_006015.4	853	ctC/ct																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266730	18266730	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	202	786	0	ENST00000222254.8:c.41C>G	p.Pro14Arg	p.P14R	ENST00000222254	NM_005027.3	14	cCg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574020	7574021	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACGCC			P-0038745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	514	760	0	ENST00000269305.4:c.1001_1006dup	p.Gly334_Arg335dup	p.G334_R335dup	ENST00000269305	NM_001126112.2	334	gag/gGGCGTGag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	92	752	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	82	587	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	70	376	0	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651153	206651153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	71	845	1	ENST00000367120.3:c.763G>A	p.Gly255Arg	p.G255R	ENST00000367120	NM_014002.3	255	Ggg/Agg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918159	50918159	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	81	850	0	ENST00000440232.2:c.2476T>A	p.Cys826Ser	p.C826S	ENST00000440232	NM_002691.3	826	Tgc/Agc																																																																														
HGF	3082	MSKCC	GRCh37	7	81346592	81346592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	168	485	0	ENST00000222390.5:c.1361C>T	p.Thr454Met	p.T454M	ENST00000222390	NM_000601.4	454	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	345	963	0	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	104	379	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2489802	2489802	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	338	830	0	ENST00000355716.4:c.199T>A	p.Cys67Ser	p.C67S	ENST00000355716	NM_003820.2	67	Tgc/Agc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640323	3640323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200057338		P-0038747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1487	185	1018	0	ENST00000294008.3:c.3316G>A	p.Val1106Met	p.V1106M	ENST00000294008	NM_032444.2	1106	Gtg/Atg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	66	534	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	37	458	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208036	5208036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	27	649	0	ENST00000357368.4:c.5675C>T	p.Thr1892Met	p.T1892M	ENST00000357368	NM_002850.3	1892	aCg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	14	498	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	40	523	1	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	74	737	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	83	640	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	79	555	0	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217381	123217381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	65	463	0	ENST00000218089.9:c.3035G>A	p.Arg1012Gln	p.R1012Q	ENST00000218089	NM_001042749.1	1012	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	29	522	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108216568	108216568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	54	352	0	ENST00000278616.4:c.8517C>A	p.Phe2839Leu	p.F2839L	ENST00000278616	NM_000051.3	2839	ttC/ttA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952049	178952049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	36	470	0	ENST00000263967.3:c.3104C>T	p.Ala1035Val	p.A1035V	ENST00000263967	NM_006218.2	1035	gCt/gTt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098800	178098800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	110	656	0	ENST00000397062.3:c.245A>G	p.Glu82Gly	p.E82G	ENST00000397062	NM_006164.4	82	gAa/gGa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220477	123220477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	68	681	0	ENST00000218089.9:c.3134G>A	p.Arg1045Gln	p.R1045Q	ENST00000218089	NM_001042749.1	1045	cGa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	69	508	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135796804	135796804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	54	386	0	ENST00000298552.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000298552	NM_001162426.1	228	cGa/cAa																																																																														
CDK6	1021	MSKCC	GRCh37	7	92404108	92404108	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	26	484	0	ENST00000265734.4:c.271G>T	p.Glu91Ter	p.E91*	ENST00000265734	NM_001259.6	91	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692918	89692918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	62	637	0	ENST00000371953.3:c.402G>T	p.Met134Ile	p.M134I	ENST00000371953	NM_000314.4	134	atG/atT																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	20	238	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938788	76938788	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	81	738	0	ENST00000373344.5:c.1960C>T	p.Arg654Ter	p.R654*	ENST00000373344	NM_000489.3	654	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845580	151845580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	73	619	0	ENST00000262189.6:c.13432C>T	p.Arg4478Ter	p.R4478*	ENST00000262189	NM_170606.2	4478	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984079	2984079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	27	537	1	ENST00000396946.4:c.451G>A	p.Glu151Lys	p.E151K	ENST00000396946	NM_032415.4	151	Gag/Aag																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851828	63851828	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201944744		P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	103	742	0	ENST00000279873.7:c.2606C>A	p.Ser869Tyr	p.S869Y	ENST00000279873	NM_032199.2	869	tCt/tAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416600	49416600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	86	616	1	ENST00000301067.7:c.16111G>A	p.Glu5371Lys	p.E5371K	ENST00000301067	NM_003482.3	5371	Gag/Aag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467884	66467884	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	29	393	0	ENST00000273854.3:c.385G>T	p.Glu129Ter	p.E129*	ENST00000273854	NM_004439.5	129	Gaa/Taa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981276	201981276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	93	744	0	ENST00000359651.3:c.355G>A	p.Asp119Asn	p.D119N	ENST00000359651		119	Gac/Aac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948386	71948386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	105	837	1	ENST00000298229.2:c.3098G>A	p.Arg1033His	p.R1033H	ENST00000298229	NM_001567.3	1033	cGt/cAt																																																																														
CCND2	894	MSKCC	GRCh37	12	4383295	4383295	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	32	626	0	ENST00000261254.3:c.89T>G	p.Leu30Arg	p.L30R	ENST00000261254	NM_001759.3	30	cTg/cGg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95599673	95599673	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	61	430	0	ENST00000343455.3:c.123T>G	p.Ile41Met	p.I41M	ENST00000343455	NM_177438.2	41	atT/atG																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43784494	43784494	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	43	608	0	ENST00000382044.4:c.180A>C	p.Glu60Asp	p.E60D	ENST00000382044	NM_001141980.1	60	gaA/gaC																																																																														
BLM	641	MSKCC	GRCh37	15	91303949	91303949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	73	566	2	ENST00000355112.3:c.1346C>A	p.Ser449Tyr	p.S449Y	ENST00000355112	NM_000057.2	449	tCt/tAt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655351	67655351	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	40	452	0	ENST00000264010.4:c.1214A>C	p.Lys405Thr	p.K405T	ENST00000264010	NM_006565.3	405	aAg/aCg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221055	5221055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	83	624	2	ENST00000357368.4:c.3411C>A	p.Phe1137Leu	p.F1137L	ENST00000357368	NM_002850.3	1137	ttC/ttA																																																																														
INSR	3643	MSKCC	GRCh37	19	7122923	7122923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	34	763	0	ENST00000302850.5:c.3336G>T	p.Lys1112Asn	p.K1112N	ENST00000302850	NM_000208.2	1112	aaG/aaT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229440	36229440	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	59	541	0	ENST00000222270.7:c.8130C>A	p.Cys2710Ter	p.C2710*	ENST00000222270	NM_014727.1	2710	tgC/tgA																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281904	39281904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	65	518	0	ENST00000402219.2:c.571G>A	p.Glu191Lys	p.E191K	ENST00000402219	NM_005633.3	191	Gaa/Aaa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128028923	128028923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	105	534	0	ENST00000285398.2:c.1934G>A	p.Arg645Gln	p.R645Q	ENST00000285398	NM_000122.1	645	cGa/cAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468369	89468369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	24	274	0	ENST00000336596.2:c.1903G>A	p.Val635Met	p.V635M	ENST00000336596	NM_005233.5	635	Gtg/Atg																																																																														
ATR	545	MSKCC	GRCh37	3	142259857	142259857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	58	516	0	ENST00000350721.4:c.3470C>A	p.Ser1157Tyr	p.S1157Y	ENST00000350721	NM_001184.3	1157	tCt/tAt																																																																														
IRF4	3662	MSKCC	GRCh37	6	393303	393303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	58	513	1	ENST00000380956.4:c.151C>T	p.Arg51Cys	p.R51C	ENST00000380956	NM_001195286.1	51	Cgc/Tgc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647473	117647473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	52	534	0	ENST00000368508.3:c.5471G>A	p.Gly1824Glu	p.G1824E	ENST00000368508	NM_002944.2	1824	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845246	151845246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	24	498	0	ENST00000262189.6:c.13766C>T	p.Thr4589Ile	p.T4589I	ENST00000262189	NM_170606.2	4589	aCt/aTt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87325658	87325658	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	48	572	0	ENST00000277120.3:c.535G>T	p.Glu179Ter	p.E179*	ENST00000277120		179	Gaa/Taa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772939	135772939	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	50	508	0	ENST00000298552.3:c.2684T>C	p.Val895Ala	p.V895A	ENST00000298552	NM_001162426.1	895	gTt/gCt																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15827422	15827422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	26	543	0	ENST00000307771.7:c.538G>T	p.Ala180Ser	p.A180S	ENST00000307771	NM_005089.3	180	Gct/Tct																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652221	48652221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	72	626	0	ENST00000376670.3:c.892C>T	p.Arg298Trp	p.R298W	ENST00000376670	NM_002049.3	298	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	117	550	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	161	853	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	190	503	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
ALK	238	MSKCC	GRCh37	2	30143209	30143209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	125	619	0	ENST00000389048.3:c.317C>T	p.Pro106Leu	p.P106L	ENST00000389048	NM_004304.4	106	cCg/cTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500473	149500473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	156	745	0	ENST00000261799.4:c.2564C>T	p.Ser855Leu	p.S855L	ENST00000261799	NM_002609.3	855	tCg/tTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006834	47006834	+	5_prime_UTR_variant	5'UTR	SNP	A	A	G			P-0038756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	166	836	0	ENST00000329236.7:c.-47A>G		p.*16*	ENST00000329236	NM_001204466.1																																																																																
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	127	694	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	95	510	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528739	157528770	+	frameshift_variant	Frame_Shift_Del	DEL	GCATTGGAAACTTGATAAGCTTCCTAGAGGAT	GCATTGGAAACTTGATAAGCTTCCTAGAGGAT	-			P-0038757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	100	599	0	ENST00000346085.5:c.6465_6496del	p.Ser2155ArgfsTer26	p.S2155Rfs*26	ENST00000346085	NM_020732.3	2155	aGCATTGGAAACTTGATAAGCTTCCTAGAGGAT/a																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	220	679	0	ENST00000358487.5:c.1647T>G	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	176	804	4	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0038758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	175	435	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557629	95557629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	205	617	0	ENST00000343455.3:c.5438A>G	p.Glu1813Gly	p.E1813G	ENST00000343455	NM_177438.2	1813	gAg/gGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	193	638	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692803	89692803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	116	402	1	ENST00000371953.3:c.287C>A	p.Pro96Gln	p.P96Q	ENST00000371953	NM_000314.4	96	cCa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943739	9943739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	216	707	0	ENST00000330684.3:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000330684	NM_001134407.1	401	cCg/cTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821400	72821401	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGC			P-0038758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	210	535	0	ENST00000268489.5:c.10771_10774dup	p.His3592ArgfsTer75	p.H3592Rfs*75	ENST00000268489	NM_006885.3	3592	cac/cGCTCac																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81990307	81990307	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	139	456	0	ENST00000359376.3:c.3579del	p.Glu1194ArgfsTer10	p.E1194Rfs*10	ENST00000359376	NM_002661.3	1193	gAa/ga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953083	2953083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	253	738	0	ENST00000396946.4:c.2857G>A	p.Glu953Lys	p.E953K	ENST00000396946	NM_032415.4	953	Gag/Aag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89456481	89456481	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	52	414	0	ENST00000336596.2:c.1657A>C	p.Ile553Leu	p.I553L	ENST00000336596	NM_005233.5	553	Att/Ctt																																																																														
MET	4233	MSKCC	GRCh37	7	116412033	116412046	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCCAGAAGGTA	TTTTCCAGAAGGTA	CTT			P-0038759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	126	810	1	ENST00000397752.3:c.3018_3028+3delinsCTT		p.X1006_splice	ENST00000397752	NM_000245.2	1006																																																																															
KIT	3815	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	245	557	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
PIM1	5292	MSKCC	GRCh37	6	37139198	37139198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	206	561	0	ENST00000373509.5:c.538G>A	p.Gly180Ser	p.G180S	ENST00000373509	NM_002648.3	180	Ggc/Agc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0038763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	151	665	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032092	10032092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201674066		P-0038763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	118	744	0	ENST00000330684.3:c.731G>A	p.Arg244His	p.R244H	ENST00000330684	NM_001134407.1	244	cGc/cAc																																																																														
ATM	472	MSKCC	GRCh37	11	108196051	108196051	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	68	436	0	ENST00000278616.4:c.6587G>C	p.Arg2196Thr	p.R2196T	ENST00000278616	NM_000051.3	2196	aGa/aCa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891296	101891296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	156	748	0	ENST00000374994.4:c.257G>A	p.Cys86Tyr	p.C86Y	ENST00000374994	NM_004612.2	86	tGt/tAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827414	72827414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	242	536	0	ENST00000268489.5:c.9167T>C	p.Ile3056Thr	p.I3056T	ENST00000268489	NM_006885.3	3056	aTt/aCt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46205316	46205316	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	159	284	0	ENST00000334344.6:c.400C>T	p.Gln134Ter	p.Q134*	ENST00000334344	NM_152641.2	134	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577056	7577057	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	304	604	0	ENST00000269305.4:c.881dup	p.Pro295AlafsTer11	p.P295Afs*11	ENST00000269305	NM_001126112.2	294	gag/gaAg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430227	181430227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	62	315	0	ENST00000325404.1:c.79G>A	p.Ala27Thr	p.A27T	ENST00000325404	NM_003106.3	27	Gcg/Acg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737930	145737930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	203	619	0	ENST00000428558.2:c.2900C>T	p.Ala967Val	p.A967V	ENST00000428558	NM_004260.3	967	gCt/gTt																																																																														
ALK	238	MSKCC	GRCh37	2	29443631	29443631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	178	657	1	ENST00000389048.3:c.3586C>A	p.Leu1196Met	p.L1196M	ENST00000389048	NM_004304.4	1196	Ctg/Atg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794598	42794598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	72	748	0	ENST00000575354.2:c.1678C>T	p.Gln560Ter	p.Q560*	ENST00000575354	NM_015125.3	560	Cag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352625	118352625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	66	477	1	ENST00000534358.1:c.3830C>T	p.Ser1277Leu	p.S1277L	ENST00000534358	NM_005933.3	1277	tCg/tTg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665410	138665410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	102	721	0	ENST00000330315.3:c.155C>A	p.Ala52Glu	p.A52E	ENST00000330315	NM_023067.3	52	gCg/gAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057641	27057641	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0038773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	116	458	0	ENST00000324856.7:c.1351-2A>G		p.X451_splice	ENST00000324856	NM_006015.4	451																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	415	695	1	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
RB1	5925	MSKCC	GRCh37	13	48947585	48947585	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	75	386	0	ENST00000267163.4:c.1172C>G	p.Ser391Ter	p.S391*	ENST00000267163	NM_000321.2	391	tCa/tGa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221785	55221787	+	missense_variant	Missense_Mutation	ONP	ATG	ATG	GAA			P-0038774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	2421	696	0	ENST00000275493.2:c.829_831delinsGAA	p.Met277Glu	p.M277E	ENST00000275493	NM_005228.3	277	ATG/GAA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	55	392	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343603	118343603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	49	385	0	ENST00000534358.1:c.1729A>G	p.Ser577Gly	p.S577G	ENST00000534358	NM_005933.3	577	Agt/Ggt																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752336	55752336	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	86	674	0	ENST00000284073.2:c.794C>G	p.Ser265Cys	p.S265C	ENST00000284073	NM_138962.2	265	tCc/tGc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78599573	78599573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	47	392	0	ENST00000306801.3:c.245C>T	p.Ala82Val	p.A82V	ENST00000306801	NM_020761.2	82	gCa/gTa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593510	48593511	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0038776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	31	278	0	ENST00000342988.3:c.1261_1262del	p.Ala421ThrfsTer7	p.A421Tfs*7	ENST00000342988	NM_005359.5	421	GCa/a																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266606	198266606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	45	368	0	ENST00000335508.6:c.2230G>C	p.Ala744Pro	p.A744P	ENST00000335508	NM_012433.2	744	Gct/Cct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47058633	47058633	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	73	606	0	ENST00000409792.3:c.7645C>G	p.Gln2549Glu	p.Q2549E	ENST00000409792	NM_014159.6	2549	Cag/Gag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045539	47045542	+	frameshift_variant	Frame_Shift_Del	DEL	AGGA	AGGA	-			P-0038776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	57	640	0	ENST00000329236.7:c.2274_2277del	p.Arg758SerfsTer10	p.R758Sfs*10	ENST00000329236	NM_001204466.1	758	AGGAag/ag																																																																														
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0038778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	57	526	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223620	36223620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	286	977	1	ENST00000222270.7:c.6170G>A	p.Arg2057His	p.R2057H	ENST00000222270	NM_014727.1	2057	cGc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026605	48026605	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	151	324	0	ENST00000234420.5:c.1483C>T	p.Arg495Ter	p.R495*	ENST00000234420	NM_000179.2	495	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	329	735	0	ENST00000269305.4:c.329del	p.Arg110LeufsTer13	p.R110Lfs*13	ENST00000269305	NM_001126112.2	110	cGt/ct																																																																														
PALB2	79728	MSKCC	GRCh37	16	23635370	23635370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	127	592	0	ENST00000261584.4:c.2794G>A	p.Val932Met	p.V932M	ENST00000261584	NM_024675.3	932	Gtg/Atg																																																																														
STK40	83931	MSKCC	GRCh37	1	36809796	36809796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	147	744	1	ENST00000373129.3:c.809G>A	p.Gly270Asp	p.G270D	ENST00000373129	NM_032017.1	270	gGc/gAc																																																																														
RB1	5925	MSKCC	GRCh37	13	49027225	49027255	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATAATCACACTGCAGCAGATATGTAAGCAA	AATAATCACACTGCAGCAGATATGTAAGCAA	-			P-0038779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	150	385	0	ENST00000267163.4:c.1796_1814+12del		p.X599_splice	ENST00000267163	NM_000321.2	599																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245594	41245595	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AA			P-0038779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	416	622	0	ENST00000357654.3:c.1953_1954delinsTT	p.Lys651_Lys652delinsAsnTer	p.K651_K652delinsN*	ENST00000357654	NM_007294.3	651	aaGAaa/aaTTaa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933271	49933271	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	280	794	0	ENST00000296474.3:c.2839C>G	p.Arg947Gly	p.R947G	ENST00000296474	NM_002447.2	947	Cgg/Ggg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79952340	79952358	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGCAACTCTGGTGAGTTG	TGGCAACTCTGGTGAGTTG	-			P-0038779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	177	411	0	ENST00000265081.6:c.351_358+11del		p.X117_splice	ENST00000265081	NM_002439.4	117																																																																															
MDC1	9656	MSKCC	GRCh37	6	30671238	30671238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	553	657	0	ENST00000376406.3:c.5639G>T	p.Ser1880Ile	p.S1880I	ENST00000376406	NM_014641.2	1880	aGc/aTc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729566	41729566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	278	595	0	ENST00000242208.4:c.963C>G	p.Cys321Trp	p.C321W	ENST00000242208	NM_002192.2	321	tgC/tgG																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224213	53224213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	252	728	0	ENST00000375401.3:c.3338C>A	p.Thr1113Asn	p.T1113N	ENST00000375401	NM_004187.3	1113	aCc/aAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0038832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	72	532	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64135703	64135703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	114	581	0	ENST00000334205.4:c.1171G>C	p.Ala391Pro	p.A391P	ENST00000334205	NM_003942.2	391	Gca/Cca																																																																														
MGA	23269	MSKCC	GRCh37	15	42005565	42005567	+	frameshift_variant	Frame_Shift_Del	DEL	AGG	AGG	TT			P-0038832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	92	388	1	ENST00000219905.7:c.3301_3303delinsTT	p.Arg1101LeufsTer32	p.R1101Lfs*32	ENST00000219905	NM_001164273.1	1101	AGG/TT																																																																														
INSR	3643	MSKCC	GRCh37	19	7166381	7166381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	108	598	1	ENST00000302850.5:c.1645G>T	p.Asp549Tyr	p.D549Y	ENST00000302850	NM_000208.2	549	Gat/Tat																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44942795	44942796	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	105	419	0	ENST00000377967.4:c.3376dup	p.Ile1126AsnfsTer25	p.I1126Nfs*25	ENST00000377967	NM_021140.2	1125	-/A																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205173	123205173	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	40	233	0	ENST00000218089.9:c.2533G>A	p.Asp845Asn	p.D845N	ENST00000218089	NM_001042749.1	845	Gat/Aat																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339207	65339207	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	22	303	0	ENST00000342505.4:c.330-1G>C		p.X110_splice	ENST00000342505	NM_002227.2	110																																																																															
STK11	6794	MSKCC	GRCh37	19	1223049	1223634	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGACCGGTGGCGCAGCATGACTGTGGTGCCGTACTTGGAGGACCTGCACGGCGCGGACGAGGACGAGGACCTCTTCGACATCGAGGATGACATCATCTACACTCAGGACTTCACGGTGCCCGGTGAGTCTGGCGGGGGCCCCTGCCCGGCTCTGCTGACTCGGCCAGGATGTCCCACGGGAGCAGGGTGCCTGCCTGTCTGCAACAAGGACAGCTTCTGCCCTCTGGTGGCCAATCCCACGTCCCCAAAGCCTCCAGCCCACCTGCAGGCTGCCTCCGCCCTGCGGGCCGCTGGGACATGGCTGAAAGGTGTGGGGTCAGCGGGGGCACCAGCCCAGGCCTGTCTGGCCAGGAGGGTTCCTCAGGCGTCTCTCCGGGTGCTGCCCAGCCAGGCACCACCCACCGGCCTTGGCCTGAGTCCCAGCAGGAGCAGGCGGGGGAGCCCCAGGGTCGGGGGAGGGTAGGTGAGAGTCAGGGTGCAGGGTGGCCCCTCAGACAGCTGGCATGAGAGAGGGTCCAGTGGCCCTCCCTCCCGTCGTCCCTGAGGCCTGCCCGCTGGCCCTGATGCCGGCCGCCCTTCTTCCCT	AGGACCGGTGGCGCAGCATGACTGTGGTGCCGTACTTGGAGGACCTGCACGGCGCGGACGAGGACGAGGACCTCTTCGACATCGAGGATGACATCATCTACACTCAGGACTTCACGGTGCCCGGTGAGTCTGGCGGGGGCCCCTGCCCGGCTCTGCTGACTCGGCCAGGATGTCCCACGGGAGCAGGGTGCCTGCCTGTCTGCAACAAGGACAGCTTCTGCCCTCTGGTGGCCAATCCCACGTCCCCAAAGCCTCCAGCCCACCTGCAGGCTGCCTCCGCCCTGCGGGCCGCTGGGACATGGCTGAAAGGTGTGGGGTCAGCGGGGGCACCAGCCCAGGCCTGTCTGGCCAGGAGGGTTCCTCAGGCGTCTCTCCGGGTGCTGCCCAGCCAGGCACCACCCACCGGCCTTGGCCTGAGTCCCAGCAGGAGCAGGCGGGGGAGCCCCAGGGTCGGGGGAGGGTAGGTGAGAGTCAGGGTGCAGGGTGGCCCCTCAGACAGCTGGCATGAGAGAGGGTCCAGTGGCCCTCCCTCCCGTCGTCCCTGAGGCCTGCCCGCTGGCCCTGATGCCGGCCGCCCTTCTTCCCT	-			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	90	616	0	ENST00000326873.7:c.989_1108+466del		p.X330_splice	ENST00000326873	NM_000455.4	330																																																																															
TCF3	6929	MSKCC	GRCh37	19	1611829	1611829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	74	548	0	ENST00000344749.5:c.1833A>T	p.Lys611Asn	p.K611N	ENST00000344749	NM_001136139.2	611	aaA/aaT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600038	10600066	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGACGCCTAAAGGGCACCATGCAGAGAA	CAGACGCCTAAAGGGCACCATGCAGAGAA	-			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	182	570	0	ENST00000171111.5:c.1532-22_1538del		p.X511_splice	ENST00000171111	NM_203500.1	511																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18266826	18266826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	62	490	0	ENST00000222254.8:c.137G>T	p.Gly46Val	p.G46V	ENST00000222254	NM_005027.3	46	gGt/gTt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733240	40733240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	61	529	0	ENST00000373198.4:c.3566C>A	p.Thr1189Lys	p.T1189K	ENST00000373198	NM_133170.3	1189	aCa/aAa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72897431	72897431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	49	362	0	ENST00000325599.8:c.61G>C	p.Val21Leu	p.V21L	ENST00000325599	NM_018130.2	21	Gtg/Ctg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31495424	31495424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	43	527	0	ENST00000344624.3:c.1724G>A	p.Arg575Gln	p.R575Q	ENST00000344624		575	cGg/cAg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867505	35867505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	22	292	0	ENST00000303115.3:c.319A>G	p.Ile107Val	p.I107V	ENST00000303115	NM_002185.3	107	Ata/Gta																																																																														
PMS2	5395	MSKCC	GRCh37	7	6037056	6037056	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0038833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	25	285	0	ENST00000265849.7:c.706-2A>C		p.X236_splice	ENST00000265849	NM_000535.5	236																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0038834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	109	493	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627438	37627447	+	frameshift_variant	Frame_Shift_Del	DEL	AAAATTGGAA	AAAATTGGAA	-			P-0038834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	74	464	0	ENST00000447079.4:c.1356_1365del	p.Lys452AsnfsTer9	p.K452Nfs*9	ENST00000447079	NM_015083.1	451	gtAAAATTGGAA/gt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267260	41267260	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	42	325	0	ENST00000349496.5:c.844A>T	p.Met282Leu	p.M282L	ENST00000349496	NM_001904.3	282	Atg/Ttg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44920597	44920597	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	72	308	0	ENST00000377967.4:c.1358A>T	p.His453Leu	p.H453L	ENST00000377967	NM_021140.2	453	cAt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	109	285	1				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0038836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	125	297	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073929	8073929	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	150	334	0	ENST00000377482.5:c.730C>T	p.Arg244Ter	p.R244*	ENST00000377482	NM_018948.3	244	Cga/Tga																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074057	8074105	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCTTCGCCTGCCAGGAACATCATATTTGAAATCAGAAAGTGTAGAGT	AAGCTTCGCCTGCCAGGAACATCATATTTGAAATCAGAAAGTGTAGAGT	-			P-0038836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	110	301	0	ENST00000377482.5:c.554_602del	p.Asp185AlafsTer46	p.D185Afs*46	ENST00000377482	NM_018948.3	185	gACTCTACACTTTCTGATTTCAAATATGATGTTCCTGGCAGGCGAAGCTTc/gc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430711	181430711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	242	541	0	ENST00000325404.1:c.563C>G	p.Ala188Gly	p.A188G	ENST00000325404	NM_003106.3	188	gCg/gGg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120365	94120365	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	113	212	0	ENST00000369303.4:c.686A>C	p.Glu229Ala	p.E229A	ENST00000369303	NM_004440.3	229	gAg/gCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0038837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	113	456	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0038837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	19	187	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741528	17741528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	29	313	1	ENST00000250003.3:c.199G>A	p.Ala67Thr	p.A67T	ENST00000250003	NM_002478.4	67	Gcg/Acg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777936	3777940	+	protein_altering_variant	In_Frame_Del	DEL	GGCTG	GGCTG	CT			P-0038837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	60	707	3	ENST00000262367.5:c.7108_7112delinsAG	p.Gln2370_Pro2371delinsSer	p.Q2370_P2371delinsS	ENST00000262367	NM_004380.2	2370	CAGCCt/AGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087961	27087961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	22	379	0	ENST00000324856.7:c.2248C>T	p.Arg750Ter	p.R750*	ENST00000324856	NM_006015.4	750	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	20	276	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624271	89624272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	93	281	0	ENST00000371953.3:c.46dupT	p.Tyr16LeufsTer28	p.Y16Lfs*28	ENST00000371953	NM_000314.4	15	-/T																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220066	36220066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	48	579	2	ENST00000222270.7:c.4786G>T	p.Gly1596Trp	p.G1596W	ENST00000222270	NM_014727.1	1596	Ggg/Tgg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589283	67589284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	19	228	0	ENST00000274335.5:c.1272dup	p.Leu425ThrfsTer17	p.L425Tfs*17	ENST00000274335		424	tta/ttAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	119	655	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
CBL	867	MSKCC	GRCh37	11	119167702	119167702	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			837	110	583	0	ENST00000264033.4:c.2111C>G	p.Ser704Cys	p.S704C	ENST00000264033	NM_005188.3	704	tCt/tGt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858769	9858769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	55	321	0	ENST00000330684.3:c.2632G>A	p.Glu878Lys	p.E878K	ENST00000330684	NM_001134407.1	878	Gaa/Aaa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095593	178095593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	89	422	0	ENST00000397062.3:c.1738G>A	p.Glu580Lys	p.E580K	ENST00000397062	NM_006164.4	580	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29490318	29490318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			774	203	442	0	ENST00000358273.4:c.403C>T	p.Arg135Trp	p.R135W	ENST00000358273	NM_001042492.2	135	Cgg/Tgg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729940	30729940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			716	84	489	0	ENST00000359013.4:c.1536G>A	p.Met512Ile	p.M512I	ENST00000359013	NM_001024847.2	512	atG/atA																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866686	37866686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1319	156	742	1	ENST00000269571.5:c.853C>G	p.Pro285Ala	p.P285A	ENST00000269571		285	Ccc/Gcc																																																																														
ALK	238	MSKCC	GRCh37	2	29456514	29456514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	141	686	0	ENST00000389048.3:c.2404G>A	p.Glu802Lys	p.E802K	ENST00000389048	NM_004304.4	802	Gaa/Aaa																																																																														
BARD1	580	MSKCC	GRCh37	2	215645841	215645841	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			737	124	605	0	ENST00000260947.4:c.757C>T	p.Gln253Ter	p.Q253*	ENST00000260947	NM_000465.2	253	Cag/Tag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	442712	442712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			776	109	568	0	ENST00000399788.2:c.1594C>A	p.Leu532Ile	p.L532I	ENST00000399788	NM_001042603.1	532	Ctt/Att																																																																														
ATR	545	MSKCC	GRCh37	3	142279184	142279184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			875	103	565	0	ENST00000350721.4:c.1462G>C	p.Glu488Gln	p.E488Q	ENST00000350721	NM_001184.3	488	Gag/Cag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026015	48026015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			709	96	506	0	ENST00000234420.5:c.893G>A	p.Arg298Gln	p.R298Q	ENST00000234420	NM_000179.2	298	cGa/cAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367315	50367315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	92	517	0	ENST00000331340.3:c.122C>T	p.Ser41Leu	p.S41L	ENST00000331340	NM_006060.4	41	tCg/tTg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743841	46743841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			928	139	744	0	ENST00000371975.4:c.2131G>A	p.Asp711Asn	p.D711N	ENST00000371975	NM_003579.3	711	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099349	27099350	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			823	131	632	0	ENST00000324856.7:c.3587dup	p.Asp1196GlufsTer24	p.D1196Efs*24	ENST00000324856	NM_006015.4	1196	gac/gAac																																																																														
ATM	472	MSKCC	GRCh37	11	108123635	108123635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	62	306	0	ENST00000278616.4:c.1894G>A	p.Glu632Lys	p.E632K	ENST00000278616	NM_000051.3	632	Gaa/Aaa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21565525	21565525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			881	122	620	0	ENST00000382592.4:c.361C>G	p.Leu121Val	p.L121V	ENST00000382592	NM_014572.2	121	Ctc/Gtc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	360015	360015	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			928	121	765	0	ENST00000262320.3:c.1074G>C	p.Glu358Asp	p.E358D	ENST00000262320	NM_003502.3	358	gaG/gaC																																																																														
CDK12	51755	MSKCC	GRCh37	17	37680989	37680989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			992	101	589	0	ENST00000447079.4:c.3158G>C	p.Ser1053Thr	p.S1053T	ENST00000447079	NM_015083.1	1053	aGt/aCt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56811519	56811519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1421	113	554	0	ENST00000337432.4:c.1067C>T	p.Ser356Leu	p.S356L	ENST00000337432	NM_058216.2	356	tCa/tTa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63531815	63531815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1263	127	612	0	ENST00000307078.5:c.2166G>T	p.Arg722Ser	p.R722S	ENST00000307078	NM_004655.3	722	agG/agT																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139083	50139083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	139	658	0	ENST00000246792.3:c.480C>A	p.Phe160Leu	p.F160L	ENST00000246792	NM_006270.3	160	ttC/ttA																																																																														
ALK	238	MSKCC	GRCh37	2	29416230	29416230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148351049		P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	137	643	0	ENST00000389048.3:c.4723C>T	p.Arg1575Cys	p.R1575C	ENST00000389048	NM_004304.4	1575	Cgt/Tgt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026221	48026221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	68	448	0	ENST00000234420.5:c.1099C>T	p.His367Tyr	p.H367Y	ENST00000234420	NM_000179.2	367	Cat/Tat																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026971	48026971	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			693	60	469	0	ENST00000234420.5:c.1849C>G	p.Leu617Val	p.L617V	ENST00000234420	NM_000179.2	617	Ctt/Gtt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198263198	198263198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			647	64	417	0	ENST00000335508.6:c.3121C>T	p.Arg1041Cys	p.R1041C	ENST00000335508	NM_012433.2	1041	Cgt/Tgt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265573	198265573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			816	102	509	1	ENST00000335508.6:c.2584G>A	p.Glu862Lys	p.E862K	ENST00000335508	NM_012433.2	862	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022656	31022656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			854	300	727	0	ENST00000375687.4:c.2141C>G	p.Ser714Cys	p.S714C	ENST00000375687	NM_015338.5	714	tCc/tGc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12633234	12633234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			927	117	608	2	ENST00000251849.4:c.1166C>A	p.Ala389Asp	p.A389D	ENST00000251849	NM_002880.3	389	gCc/gAc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437315	52437315	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			969	113	676	0	ENST00000460680.1:c.1730-1G>C		p.X577_splice	ENST00000460680	NM_004656.3	577																																																																															
ATR	545	MSKCC	GRCh37	3	142281160	142281160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	90	430	0	ENST00000350721.4:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000350721	NM_001184.3	362	Gaa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142281576	142281576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			932	99	649	0	ENST00000350721.4:c.668G>A	p.Arg223Lys	p.R223K	ENST00000350721	NM_001184.3	223	aGa/aAa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807540	1807540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1905	146	800	0	ENST00000260795.2:c.1709G>A	p.Arg570Gln	p.R570Q	ENST00000260795		570	cGg/cAg																																																																														
KIT	3815	MSKCC	GRCh37	4	55592115	55592115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			754	100	544	0	ENST00000288135.5:c.1439C>T	p.Ser480Phe	p.S480F	ENST00000288135	NM_000222.2	480	tCt/tTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55974043	55974043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	101	561	0	ENST00000263923.4:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000263923	NM_002253.2	425	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55976903	55976903	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	102	540	0	ENST00000263923.4:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000263923	NM_002253.2	337	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590496	67590496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	53	234	0	ENST00000274335.5:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000274335		520	Gaa/Aaa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517620	176517620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	160	854	0	ENST00000292408.4:c.321G>A	p.Met107Ile	p.M107I	ENST00000292408	NM_213647.1	107	atG/atA																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197129	26197129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			739	196	454	0	ENST00000356476.2:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000356476		117	cGa/cAa																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197235	26197235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			779	98	419	0	ENST00000356476.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000356476		82	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163832	32163832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012706-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			956	260	663	0	ENST00000375023.3:c.5394G>C	p.Gln1798His	p.Q1798H	ENST00000375023	NM_004557.3	1798	caG/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	56	417	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			655	94	711	2	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	50	435	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			656	91	805	1	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	66	574	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99193507	99193507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			747	125	885	1	ENST00000074304.5:c.2702G>A	p.Arg901His	p.R901H	ENST00000074304	NM_001134224.1	901	cGt/cAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	29	626	3	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
CCND1	595	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			803	107	1007	0	ENST00000227507.2:c.859C>G	p.Pro287Ala	p.P287A	ENST00000227507	NM_053056.2	287	Ccc/Gcc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591259	67591259	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	76	422	3	ENST00000274335.5:c.1761delA	p.Gly588ValfsTer7	p.G588Vfs*7	ENST00000274335		586	cAa/ca																																																																														
POLE	5426	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			862	52	931	8	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			771	42	944	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ATRX	546	MSKCC	GRCh37	X	76944400	76944400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			516	28	520	0	ENST00000373344.5:c.505G>A	p.Val169Met	p.V169M	ENST00000373344	NM_000489.3	169	Gtg/Atg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188098	11188098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	33	520	0	ENST00000361445.4:c.5996G>A	p.Cys1999Tyr	p.C1999Y	ENST00000361445	NM_004958.3	1999	tGt/tAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059243	27059244	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			616	107	658	0	ENST00000324856.7:c.1881dup	p.Met628TyrfsTer14	p.M628Yfs*14	ENST00000324856	NM_006015.4	627	gat/gaTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720745	89720745	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	15	247	0	ENST00000371953.3:c.898del	p.Ile300SerfsTer7	p.I300Sfs*7	ENST00000371953	NM_000314.4	299	gAa/ga																																																																														
STK11	6794	MSKCC	GRCh37	19	1221962	1221962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	60	1002	1	ENST00000326873.7:c.877G>A	p.Glu293Lys	p.E293K	ENST00000326873	NM_000455.4	293	Gaa/Aaa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918991	50918991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			782	56	829	1	ENST00000440232.2:c.2728C>T	p.Arg910Trp	p.R910W	ENST00000440232	NM_002691.3	910	Cgg/Tgg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182593	99182593	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	39	529	0	ENST00000074304.5:c.2396T>C	p.Phe799Ser	p.F799S	ENST00000074304	NM_001134224.1	799	tTc/tCc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128018877	128018877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	88	632	0	ENST00000285398.2:c.1991C>A	p.Ser664Tyr	p.S664Y	ENST00000285398	NM_000122.1	664	tCc/tAc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			826	36	627	0	ENST00000397062.3:c.241G>T	p.Gly81Cys	p.G81C	ENST00000397062	NM_006164.4	81	Ggt/Tgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513246	44513246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	84	563	0	ENST00000291552.4:c.689G>A	p.Arg230Gln	p.R230Q	ENST00000291552	NM_006758.2	230	cGg/cAg																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127163	22127163	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	23	429	0	ENST00000215832.6:c.965A>G	p.Glu322Gly	p.E322G	ENST00000215832	NM_002745.4	322	gAg/gGg																																																																														
ATR	545	MSKCC	GRCh37	3	142231182	142231182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017086-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	78	523	0	ENST00000350721.4:c.4772G>T	p.Trp1591Leu	p.W1591L	ENST00000350721	NM_001184.3	1591	tGg/tTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435317	56435317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200066146		P-0033436-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	208	718	1	ENST00000407977.2:c.1820C>T	p.Ser607Leu	p.S607L	ENST00000407977		607	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033436-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	283	730	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444987	49444987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033436-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	301	654	0	ENST00000301067.7:c.2479del	p.Gln827AsnfsTer103	p.Q827Nfs*103	ENST00000301067	NM_003482.3	827	Caa/aa																																																																														
CARM1	10498	MSKCC	GRCh37	19	10982529	10982529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033436-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	70	188	1	ENST00000327064.4:c.151G>A	p.Ala51Thr	p.A51T	ENST00000327064	NM_199141.1	51	Gcg/Acg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638273	176638273	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033436-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	166	722	0	ENST00000439151.2:c.2873C>G	p.Ser958Ter	p.S958*	ENST00000439151	NM_022455.4	958	tCa/tGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880071	151880071	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033436-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	136	364	0	ENST00000262189.6:c.5253G>A	p.Trp1751Ter	p.W1751*	ENST00000262189	NM_170606.2	1751	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	419	661	2	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
MYC	4609	MSKCC	GRCh37	8	128750639	128750639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	388	660	0	ENST00000377970.2:c.176C>T	p.Ala59Val	p.A59V	ENST00000377970	NM_002467.4	59	gCg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445813	49445813	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	602	1115	0	ENST00000301067.7:c.1653del	p.Glu551AspfsTer379	p.E551Dfs*379	ENST00000301067	NM_003482.3	551	gaA/ga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	32	296	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	24	475	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	135	828	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649566	206649566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	41	761	0	ENST00000367120.3:c.401G>C	p.Arg134Pro	p.R134P	ENST00000367120	NM_014002.3	134	cGc/cCc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856482	111856482	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	19	250	0	ENST00000341259.2:c.533T>C	p.Leu178Pro	p.L178P	ENST00000341259	NM_005475.2	178	cTg/cCg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56865899	56865899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	18	456	0	ENST00000308159.5:c.1231G>C	p.Glu411Gln	p.E411Q	ENST00000308159	NM_014669.4	411	Gag/Cag																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30320304	30320304	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	27	449	0	ENST00000322652.5:c.1245A>T	p.Glu415Asp	p.E415D	ENST00000322652	NM_015355.2	415	gaA/gaT																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618186	37618187	+	upstream_gene_variant	5'Flank	INS	-	-	T			P-0038427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	13	97	0				ENST00000447079	NM_015083.1																																																																																
CDK12	51755	MSKCC	GRCh37	17	37619319	37619320	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AG			P-0038427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	27	615	1	ENST00000447079.4:c.995_996delinsAG	p.Ser332Ter	p.S332*	ENST00000447079	NM_015083.1	332	tCC/tAG																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5229338	5229338	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	30	747	0	ENST00000357368.4:c.2365A>T	p.Thr789Ser	p.T789S	ENST00000357368	NM_002850.3	789	Acg/Tcg																																																																														
KIT	3815	MSKCC	GRCh37	4	55589819	55589819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	18	519	0	ENST00000288135.5:c.1301C>T	p.Pro434Leu	p.P434L	ENST00000288135	NM_000222.2	434	cCa/cTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184043	123184043	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	10	397	0	ENST00000218089.9:c.901A>C	p.Ile301Leu	p.I301L	ENST00000218089	NM_001042749.1	301	Ata/Cta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038428-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	124	475	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63700138	63700138	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038428-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	86	315	0	ENST00000279873.7:c.473A>G	p.Lys158Arg	p.K158R	ENST00000279873	NM_032199.2	158	aAa/aGa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344469	118344469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038428-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	56	411	0	ENST00000534358.1:c.2595C>A	p.Asp865Glu	p.D865E	ENST00000534358	NM_005933.3	865	gaC/gaA																																																																														
SPOP	8405	MSKCC	GRCh37	17	47677880	47677880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038428-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	192	661	0	ENST00000347630.2:c.985G>T	p.Ala329Ser	p.A329S	ENST00000347630	NM_001007230.1	329	Gct/Tct																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58677894	58677894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038428-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	78	576	0	ENST00000305921.3:c.119C>T	p.Ser40Leu	p.S40L	ENST00000305921	NM_003620.3	40	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	89	817	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	180	548	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0038429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	77	805	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0038429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	310	909	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952152	178952152	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0038429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	107	306	0	ENST00000263967.3:c.3207A>G	p.Ter1069TrpextTer4	p.*1069Wext*4	ENST00000263967	NM_006218.2	1069	tgA/tgG																																																																														
APC	324	MSKCC	GRCh37	5	112175818	112175893	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGG	GAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGG	-			P-0038429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	220	363	0	ENST00000257430.4:c.4527_4602del	p.Ser1510MetfsTer30	p.S1510Mfs*30	ENST00000257430	NM_000038.5	1509	ctGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGG/ct																																																																														
VHL	7428	MSKCC	GRCh37	3	10183725	10183725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	38	700	0	ENST00000256474.2:c.194C>T	p.Ser65Leu	p.S65L	ENST00000256474	NM_000551.3	65	tCg/tTg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347954	347954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	11	991	0	ENST00000262320.3:c.1552C>T	p.Pro518Ser	p.P518S	ENST00000262320	NM_003502.3	518	Ccc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	63	536	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	201	328	0				ENST00000310581	NM_198253.2																																																																																
TSHR	7253	MSKCC	GRCh37	14	81610258	81610258	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	123	611	0	ENST00000298171.2:c.1856A>G	p.Asp619Gly	p.D619G	ENST00000298171	NM_000369.2	619	gAt/gGt																																																																														
HGF	3082	MSKCC	GRCh37	7	81386613	81386613	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	64	482	0	ENST00000222390.5:c.374T>G	p.Ile125Ser	p.I125S	ENST00000222390	NM_000601.4	125	aTt/aGt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197002	123197002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	56	364	0	ENST00000218089.9:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000218089	NM_001042749.1	590	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	136	606	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	51	495	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98215787	98215787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	90	763	0	ENST00000331920.6:c.3422C>T	p.Ala1141Val	p.A1141V	ENST00000331920	NM_000264.3	1141	gCg/gTg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650654	67650654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	72	594	0	ENST00000264010.4:c.959G>A	p.Arg320His	p.R320H	ENST00000264010	NM_006565.3	320	cGt/cAt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074115	8074115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	86	537	0	ENST00000377482.5:c.544del	p.Leu182PhefsTer2	p.L182Ffs*2	ENST00000377482	NM_018948.3	182	Ctt/tt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056053	26056067	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGGCTTAGCGG	CCTTGGGCTTAGCGG	-	rs756916945		P-0038433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	118	497	0	ENST00000343677.2:c.590_604del	p.Ala197_Lys201del	p.A197_K201del	ENST00000343677	NM_005319.3	197	gCCGCTAAGCCCAAGGtt/gtt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25964923	25964923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	150	594	0	ENST00000435504.4:c.4283G>A	p.Cys1428Tyr	p.C1428Y	ENST00000435504		1428	tGc/tAc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068872	30068872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	111	596	0	ENST00000331968.5:c.2057T>C	p.Leu686Ser	p.L686S	ENST00000331968	NM_002742.2	686	tTa/tCa																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175958598	175958598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	114	393	0	ENST00000367669.3:c.1747T>C	p.Tyr583His	p.Y583H	ENST00000367669	NM_022457.5	583	Tat/Cat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11300492	11300492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	277	805	0	ENST00000361445.4:c.1654C>G	p.Leu552Val	p.L552V	ENST00000361445	NM_004958.3	552	Ctt/Gtt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023364	27023463	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCGTCTGCCGTCGCCGCCGCCGCGGCCGCCGTCTTCCACCAACAACATGGCGGACAACAAAGCCCTGGCCTGGCAGCGCTGCAGAGCGGCGGCGGCGG	GCCCGTCTGCCGTCGCCGCCGCCGCGGCCGCCGTCTTCCACCAACAACATGGCGGACAACAAAGCCCTGGCCTGGCAGCGCTGCAGAGCGGCGGCGGCGG	-			P-0038481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	113	231	0	ENST00000324856.7:c.471_570del	p.Ser157ArgfsTer42	p.S157Rfs*42	ENST00000324856	NM_006015.4	157	aGCCCGTCTGCCGTCGCCGCCGCCGCGGCCGCCGTCTTCCACCAACAACATGGCGGACAACAAAGCCCTGGCCTGGCAGCGCTGCAGAGCGGCGGCGGCGGg/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0038481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	564	690	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27777923	27777950	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCTCGGAAGAGCGCTCCGGCCACC	GGCGGCTCGGAAGAGCGCTCCGGCCACC	-			P-0038481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	275	422	0	ENST00000369163.2:c.77_104del	p.Ala26ValfsTer28	p.A26Vfs*28	ENST00000369163	NM_003536.2	24	aaGGCGGCTCGGAAGAGCGCTCCGGCCACC/aa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781266	135781344	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGCTTTCATCAGCACTGCCGCAGGGCAGGTCTATGGGAGTAAAGGCTTGCTTTGGTGTGTCAGGCCCAAGCTTGTC	CAGGGCTTTCATCAGCACTGCCGCAGGGCAGGTCTATGGGAGTAAAGGCTTGCTTTGGTGTGTCAGGCCCAAGCTTGTC	-			P-0038481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	209	593	0	ENST00000298552.3:c.1621_1699del	p.Asp541ArgfsTer62	p.D541Rfs*62	ENST00000298552	NM_001162426.1	541	GACAAGCTTGGGCCTGACACACCAAAGCAAGCCTTTACTCCCATAGACCTGCCCTGCGGCAGTGCTGATGAAAGCCCTGcg/cg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220514	123220514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	249	616	2	ENST00000218089.9:c.3171G>C	p.Met1057Ile	p.M1057I	ENST00000218089	NM_001042749.1	1057	atG/atC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	843	778	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087545	27087554	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCAGTCTC	GCTCAGTCTC	-			P-0038581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	246	566	0	ENST00000324856.7:c.2125_2134del	p.Ser709AspfsTer30	p.S709Dfs*30	ENST00000324856	NM_006015.4	707	GCTCAGTCTCgc/gc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433722	49433722	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	331	781	0	ENST00000301067.7:c.7831C>G	p.Arg2611Gly	p.R2611G	ENST00000301067	NM_003482.3	2611	Cgc/Ggc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442490	52442490	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0038581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	67	373	0	ENST00000460680.1:c.255G>C	p.Gln85His	p.Q85H	ENST00000460680	NM_004656.3	85	caG/caC																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117531	4117531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	49	265	0	ENST00000262948.5:c.189G>T	p.Lys63Asn	p.K63N	ENST00000262948	NM_030662.3	63	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	258	621	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610299	81610299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	76	487	1	ENST00000298171.2:c.1897G>A	p.Asp633Asn	p.D633N	ENST00000298171	NM_000369.2	633	Gac/Aac																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736393	85736393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	36	394	0	ENST00000370580.1:c.254C>A	p.Ser85Tyr	p.S85Y	ENST00000370580	NM_003921.4	85	tCt/tAt																																																																														
PARP1	142	MSKCC	GRCh37	1	226567642	226567642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	88	562	0	ENST00000366794.5:c.1524G>T	p.Lys508Asn	p.K508N	ENST00000366794	NM_001618.3	508	aaG/aaT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352564	118352564	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	60	558	0	ENST00000534358.1:c.3769A>C	p.Ser1257Arg	p.S1257R	ENST00000534358	NM_005933.3	1257	Agc/Cgc																																																																														
RB1	5925	MSKCC	GRCh37	13	48947573	48947573	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	13	386	0	ENST00000267163.4:c.1160T>C	p.Met387Thr	p.M387T	ENST00000267163	NM_000321.2	387	aTg/aCg																																																																														
CD276	80381	MSKCC	GRCh37	15	74003509	74003509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	61	634	0	ENST00000318443.5:c.1580A>G	p.Glu527Gly	p.E527G	ENST00000318443	NM_001024736.1	527	gAa/gGa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983979	15983979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	75	364	0	ENST00000268712.3:c.3240G>T	p.Lys1080Asn	p.K1080N	ENST00000268712	NM_006311.3	1080	aaG/aaT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48586278	48586278	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	20	396	0	ENST00000342988.3:c.947A>G	p.Asn316Ser	p.N316S	ENST00000342988	NM_005359.5	316	aAt/aGt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144162	11144162	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	62	712	0	ENST00000344626.4:c.3743A>C	p.Gln1248Pro	p.Q1248P	ENST00000344626	NM_003072.3	1248	cAg/cCg																																																																														
CALR	811	MSKCC	GRCh37	19	13054387	13054387	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	93	643	0	ENST00000316448.5:c.997A>G	p.Thr333Ala	p.T333A	ENST00000316448	NM_004343.3	333	Acc/Gcc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910289	50910289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1420	175	770	0	ENST00000440232.2:c.1544A>G	p.Asp515Gly	p.D515G	ENST00000440232	NM_002691.3	515	gAt/gGt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750543	57750543	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	38	454	0	ENST00000274289.3:c.1925T>G	p.Leu642Arg	p.L642R	ENST00000274289	NM_006622.3	642	cTt/cGt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967934	93967934	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	112	473	0	ENST00000369303.4:c.1993A>C	p.Lys665Gln	p.K665Q	ENST00000369303	NM_004440.3	665	Aaa/Caa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371935	55371935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	61	405	0	ENST00000297316.4:c.625C>A	p.Leu209Met	p.L209M	ENST00000297316	NM_022454.3	209	Ctg/Atg																																																																														
FANCC	2176	MSKCC	GRCh37	9	98009765	98009765	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	65	296	0	ENST00000289081.3:c.199A>C	p.Ile67Leu	p.I67L	ENST00000289081	NM_000136.2	67	Att/Ctt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98241407	98241407	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	44	432	0	ENST00000331920.6:c.1090T>C	p.Phe364Leu	p.F364L	ENST00000331920	NM_000264.3	364	Ttc/Ctc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410580	63410580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	47	410	0	ENST00000330258.3:c.2587C>T	p.Pro863Ser	p.P863S	ENST00000330258	NM_152424.3	863	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0038583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	786	719	1	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																														
SESN2	83667	MSKCC	GRCh37	1	28607302	28607302	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	97	534	0	ENST00000253063.3:c.1432T>A	p.Tyr478Asn	p.Y478N	ENST00000253063	NM_031459.4	478	Tac/Aac																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226347	41226347	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0038583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	136	426	0	ENST00000357654.3:c.4675+1G>A		p.X1559_splice	ENST00000357654	NM_007294.3	1559																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25965228	25965228	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	86	607	0	ENST00000435504.4:c.3978C>G	p.Ser1326Arg	p.S1326R	ENST00000435504		1326	agC/agG																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50358679	50358679	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	66	252	0	ENST00000331340.3:c.22G>C	p.Asp8His	p.D8H	ENST00000331340	NM_006060.4	8	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	98	628	0	ENST00000269305.4:c.568C>T	p.Pro190Ser	p.P190S	ENST00000269305	NM_001126112.2	190	Cct/Tct																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52702552	52702552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	72	421	0	ENST00000394830.3:c.346T>C	p.Phe116Leu	p.F116L	ENST00000394830	NM_018313.4	116	Ttc/Ctc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710650	117710650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	71	347	0	ENST00000368508.3:c.1622G>T	p.Gly541Val	p.G541V	ENST00000368508	NM_002944.2	541	gGg/gTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922749	44922750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	90	213	0	ENST00000377967.4:c.1611dup	p.Val538SerfsTer15	p.V538Sfs*15	ENST00000377967	NM_021140.2	537	tca/tcAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0038585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	65	304	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	17	311	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938400	44938400	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	54	151	0	ENST00000377967.4:c.2951del	p.Phe984SerfsTer15	p.F984Sfs*15	ENST00000377967	NM_021140.2	983	cTt/ct																																																																														
MED12	9968	MSKCC	GRCh37	X	70349257	70349258	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0038585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	55	325	0	ENST00000374080.3:c.3669_3670delinsGT	p.Leu1224Phe	p.L1224F	ENST00000374080		1223	gtTCtc/gtGTtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0038587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	680	671	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	62	594	1	ENST00000269305.4:c.734G>C	p.Gly245Ala	p.G245A	ENST00000269305	NM_001126112.2	245	gGc/gCc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221162	5221162	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	44	684	0	ENST00000357368.4:c.3304C>G	p.Arg1102Gly	p.R1102G	ENST00000357368	NM_002850.3	1102	Cgc/Ggc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18274087	18274087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	45	555	0	ENST00000222254.8:c.1305G>T	p.Lys435Asn	p.K435N	ENST00000222254	NM_005027.3	435	aaG/aaT																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56111695	56111695	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	25	137	0	ENST00000399503.3:c.295G>C	p.Ala99Pro	p.A99P	ENST00000399503	NM_005921.1	99	Gcg/Ccg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179209	123179209	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	17	349	0	ENST00000218089.9:c.658A>T	p.Thr220Ser	p.T220S	ENST00000218089	NM_001042749.1	220	Acc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	64	451	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	74	444	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0038656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	105	715	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67198986	67198986	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	60	393	1	ENST00000312629.5:c.457G>A	p.Gly153Ser	p.G153S	ENST00000312629	NM_003952.2	153	Ggt/Agt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974768	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCCG	CGGGCCG	-			P-0038656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	61	278	0	ENST00000304494.5:c.59_65del	p.Ala20GlyfsTer4	p.A20Gfs*4	ENST00000304494	NM_000077.4	20	gCGGCCCGg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974762	21974768	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCCG	CGGGCCG	-			P-0038656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	61	278	0	ENST00000304494.5:c.59_65del	p.Ala20GlyfsTer4	p.A20Gfs*4	ENST00000304494	NM_000077.4	20	gCGGCCCGg/gg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	98	231	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	401	208	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374390	31374390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	48	211	0	ENST00000328111.2:c.389G>A	p.Arg130His	p.R130H	ENST00000328111	NM_006892.3	130	cGc/cAc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523285	9523285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	87	247	0	ENST00000353224.5:c.1952C>T	p.Ala651Val	p.A651V	ENST00000353224	NM_177990.2	651	gCg/gTg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63819026	63819026	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	34	174	0	ENST00000279873.7:c.1073C>G	p.Ala358Gly	p.A358G	ENST00000279873	NM_032199.2	358	gCt/gGt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608225	28608225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	75	250	0	ENST00000241453.7:c.1831G>A	p.Glu611Lys	p.E611K	ENST00000241453	NM_004119.2	611	Gag/Aag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004489	150004489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	131	252	0	ENST00000253339.5:c.1736C>T	p.Pro579Leu	p.P579L	ENST00000253339		579	cCt/cTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70352334	70352334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	54	605	0	ENST00000374080.3:c.4361G>A	p.Gly1454Asp	p.G1454D	ENST00000374080		1454	gGt/gAt																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944982	31944982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	87	857	3	ENST00000340398.3:c.119G>A	p.Arg40His	p.R40H	ENST00000340398	NM_001013699.2	40	cGc/cAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726656	88726656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	130	566	0	ENST00000360948.2:c.388C>T	p.Arg130Cys	p.R130C	ENST00000360948	NM_001012338.2	130	Cgt/Tgt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825400	134825400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	184	638	2	ENST00000398015.3:c.916G>A	p.Gly306Ser	p.G306S	ENST00000398015	NM_004441.4	306	Ggt/Agt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	132	142	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780650	56780662	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTTATCTTCT	AAGTTTATCTTCT	-			P-0038668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	108	120	0	ENST00000337432.4:c.665_677del	p.Gln222LeufsTer13	p.Q222Lfs*13	ENST00000337432	NM_058216.2	222	cAAGTTTATCTTCTt/ct																																																																														
KIT	3815	MSKCC	GRCh37	4	55593640	55593660	+	inframe_deletion	In_Frame_Del	DEL	TTTACATAGACCCAACACAAC	TTTACATAGACCCAACACAAC	-			P-0038669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	112	475	0	ENST00000288135.5:c.1708_1728delTACATAGACCCAACACAACTT	p.Tyr570_Leu576del	p.Y570_L576del	ENST00000288135	NM_000222.2	569	gTTTACATAGACCCAACACAACtt/gtt																																																																														
PAK1	5058	MSKCC	GRCh37	11	77090383	77090383	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	221	473	0	ENST00000356341.3:c.342G>C	p.Lys114Asn	p.K114N	ENST00000356341	NM_002576.4	114	aaG/aaC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	247	318	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	628	852	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99180083	99180083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	155	527	2	ENST00000074304.5:c.2026G>A	p.Val676Met	p.V676M	ENST00000074304	NM_001134224.1	676	Gtg/Atg																																																																														
CBL	867	MSKCC	GRCh37	11	119077305	119077305	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	273	694	1	ENST00000264033.4:c.178T>A	p.Trp60Arg	p.W60R	ENST00000264033	NM_005188.3	60	Tgg/Agg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30194802	30194802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	80	583	1	ENST00000331968.5:c.343C>A	p.Gln115Lys	p.Q115K	ENST00000331968	NM_002742.2	115	Cag/Aag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2164155	2164211	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	AGCATGGTGCGGCGGCCGCGCGCGCGGACATGGGGGAGAAGCTGGAGCTGAGACTGA	AGCATGGTGCGGCGGCCGCGCGCGCGGACATGGGGGAGAAGCTGGAGCTGAGACTGA	-			P-0038674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	110	265	0	ENST00000398665.3:c.-27_30del		p.*9*	ENST00000398665	NM_032482.2																																																																																
HIST1H3E	8353	MSKCC	GRCh37	6	26225732	26225732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	112	572	0	ENST00000360408.1:c.350G>A	p.Arg117His	p.R117H	ENST00000360408	NM_003532.2	117	cGc/cAc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958897	2959073	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGGGCTTCTCTATAAGCCCCTCTGCTGATGTTCGTGGCATCCGCAGCCTCCTGCCTGGTCCTCCATAGACTCAGGGAAATGGAGGCCCCGCCCTGATTCTGGCCTCACCGGCTGTAGCTGGGTATGGTGCCCATATCCAGGTCATGGTCTGTGAAAGGGTCGACCCGCGCGCACAG	CTGGGCTTCTCTATAAGCCCCTCTGCTGATGTTCGTGGCATCCGCAGCCTCCTGCCTGGTCCTCCATAGACTCAGGGAAATGGAGGCCCCGCCCTGATTCTGGCCTCACCGGCTGTAGCTGGGTATGGTGCCCATATCCAGGTCATGGTCTGTGAAAGGGTCGACCCGCGCGCACAG	-			P-0038674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	70	169	0	ENST00000396946.4:c.2443_2510+109del		p.X815_splice	ENST00000396946	NM_032415.4	815																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27057682	27057682	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	138	662	1	ENST00000324856.7:c.1390C>T	p.Gln464Ter	p.Q464*	ENST00000324856	NM_006015.4	464	Caa/Taa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289247	33289247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	301	591	0	ENST00000374542.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000374542	NM_001141970.1	102	tCg/tTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438640	49438640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	443	737	2	ENST00000301067.7:c.4850G>A	p.Arg1617Gln	p.R1617Q	ENST00000301067	NM_003482.3	1617	cGg/cAg																																																																														
RB1	5925	MSKCC	GRCh37	13	49033964	49033964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	209	392	1	ENST00000267163.4:c.2101G>A	p.Asp701Asn	p.D701N	ENST00000267163	NM_000321.2	701	Gac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057649	27057649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	100	572	0	ENST00000324856.7:c.1357C>A	p.Pro453Thr	p.P453T	ENST00000324856	NM_006015.4	453	Cct/Act																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057719	27057719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	186	730	0	ENST00000324856.7:c.1427C>T	p.Pro476Leu	p.P476L	ENST00000324856	NM_006015.4	476	cCt/cTt																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175956084	175956084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	141	336	0	ENST00000367669.3:c.2128G>C	p.Asp710His	p.D710H	ENST00000367669	NM_022457.5	710	Gat/Cat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431242	49431243	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0038678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	309	678	0	ENST00000301067.7:c.9896_9897del	p.His3299ArgfsTer123	p.H3299Rfs*123	ENST00000301067	NM_003482.3	3299	cAT/c																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369226	40369226	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	335	576	2	ENST00000293328.3:c.1332T>A	p.Phe444Leu	p.F444L	ENST00000293328	NM_012448.3	444	ttT/ttA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	94	393	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	246	730	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	49	252	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976745	2976745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	406	789	2	ENST00000396946.4:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000396946	NM_032415.4	423	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112174998	112174999	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0038680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	20	208	0	ENST00000257430.4:c.3709_3710del	p.Gln1237GlufsTer2	p.Q1237Efs*2	ENST00000257430	NM_000038.5	1236	gCA/g																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210796	5210796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	172	658	2	ENST00000357368.4:c.5255C>T	p.Ala1752Val	p.A1752V	ENST00000357368	NM_002850.3	1752	gCg/gTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAGCAA	-			P-0038680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	18	289	0	ENST00000346085.5:c.369_392del	p.Gln124_Gln131del	p.Q124_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAA/-																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390816	139390816	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	299	898	0	ENST00000277541.6:c.7375del	p.Gln2459ArgfsTer18	p.Q2459Rfs*18	ENST00000277541	NM_017617.3	2459	Cag/ag																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139804435	139804437	+	missense_variant	Missense_Mutation	ONP	CCC	CCC	TCT			P-0038680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	88	737	0	ENST00000247668.2:c.592_594delinsTCT	p.Pro198Ser	p.P198S	ENST00000247668	NM_021138.3	198	CCC/TCT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	50	385	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	45	480	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	42	610	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383144	42383144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	30	699	1	ENST00000221972.3:c.164C>T	p.Pro55Leu	p.P55L	ENST00000221972	NM_021601.3	55	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175749	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTAT	TACTTTAT	-			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	22	287	0	ENST00000257430.4:c.4461_4468delTTTATTAC	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1486	gaTACTTTATta/gata																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201873	152201873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	21	354	0	ENST00000206249.3:c.727C>T	p.Arg243Cys	p.R243C	ENST00000206249	NM_000125.3	243	Cgt/Tgt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910854	114910854	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	48	483	0	ENST00000543371.1:c.973C>T	p.Gln325Ter	p.Q325*	ENST00000543371	NM_001198531.1	325	Cag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119406	70119725	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCACCCCAAAAGCACACACAGGGCTCTTACACAAGTAGCAATTAGGTCTTCCGGACCCTCCGGGCCCCAGACCCTCCCCTGATAAAAGGGGGCTGTCCAGTGTGTACCGGCGGGTTAATCATTGGGCGACTTATCTCCGGTGCAGCGCGCCTCTTGCGCGGGTGCGGGCCCTTATTACACTTTAGCAGCGAGGGAGGGTCCCCGGAGGGTGCCTAAGACTAGGGCGTCTGCACAGCCCTTGTTGATTTTCTCGTGCTTGTTCTTTTATTGTCCACAGGGCAATCCCAGGGCCCACCGACCCCACCCACCACCCCCAAAA	CCCACCCCAAAAGCACACACAGGGCTCTTACACAAGTAGCAATTAGGTCTTCCGGACCCTCCGGGCCCCAGACCCTCCCCTGATAAAAGGGGGCTGTCCAGTGTGTACCGGCGGGTTAATCATTGGGCGACTTATCTCCGGTGCAGCGCGCCTCTTGCGCGGGTGCGGGCCCTTATTACACTTTAGCAGCGAGGGAGGGTCCCCGGAGGGTGCCTAAGACTAGGGCGTCTGCACAGCCCTTGTTGATTTTCTCGTGCTTGTTCTTTTATTGTCCACAGGGCAATCCCAGGGCCCACCGACCCCACCCACCACCCCCAAAA	-			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	133	44	0	ENST00000245479.2:c.686-276_729del		p.X229_splice	ENST00000245479	NM_000346.3	229																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30715656	30715656	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	21	272	0	ENST00000359013.4:c.1389T>A	p.Asn463Lys	p.N463K	ENST00000359013	NM_001024847.2	463	aaT/aaA																																																																														
APC	324	MSKCC	GRCh37	5	112174263	112174263	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	20	298	0	ENST00000257430.4:c.2974del	p.Ser992ValfsTer13	p.S992Vfs*13	ENST00000257430	NM_000038.5	991	gAa/ga																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199963	138199963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	54	479	0	ENST00000237289.4:c.1381C>T	p.Pro461Ser	p.P461S	ENST00000237289	NM_001270507.1	461	Cca/Tca																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	83	373	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
KIT	3815	MSKCC	GRCh37	4	55592144	55592145	+	inframe_insertion	In_Frame_Ins	INS	-	-	AATGTA			P-0038683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1316	2292	568	0	ENST00000288135.5:c.1470_1475dup	p.Cys491_Lys492dup	p.C491_K492dup	ENST00000288135	NM_000222.2	491	gaa/gAATGTAaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	262	773	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120484338	120484338	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	80	476	0	ENST00000256646.2:c.2792A>T	p.Asn931Ile	p.N931I	ENST00000256646	NM_024408.3	931	aAt/aTt																																																																														
RHOA	387	MSKCC	GRCh37	3	49397643	49397643	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0033527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	172	657	0	ENST00000418115.1:c.581G>C	p.Ter194SerextTer54	p.*194Sext*54	ENST00000418115	NM_001664.2	194	tGa/tCa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253817	153253817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	134	487	0	ENST00000281708.4:c.916C>G	p.Gln306Glu	p.Q306E	ENST00000281708	NM_033632.3	306	Cag/Gag																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322886	31322886	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	46	598	0	ENST00000412585.2:c.1010C>T	p.Ser337Leu	p.S337L	ENST00000412585	NM_005514.6	337	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949146	151949147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	130	698	0	ENST00000262189.6:c.1498dup	p.Thr500AsnfsTer4	p.T500Nfs*4	ENST00000262189	NM_170606.2	500	aca/aAca																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138409963	138409963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	31	487	0	ENST00000289153.2:c.1915C>G	p.Leu639Val	p.L639V	ENST00000289153	NM_006219.2	639	Ctt/Gtt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610650	52610650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	124	634	0	ENST00000394830.3:c.3523G>A	p.Glu1175Lys	p.E1175K	ENST00000394830	NM_018313.4	1175	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41568569	41568569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	43	781	1	ENST00000263253.7:c.4519G>A	p.Asp1507Asn	p.D1507N	ENST00000263253	NM_001429.3	1507	Gat/Aat																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271962	18271962	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	152	476	0	ENST00000222254.8:c.565G>T	p.Glu189Ter	p.E189*	ENST00000222254	NM_005027.3	189	Gag/Tag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99152243	99152243	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	105	498	0	ENST00000074304.5:c.322C>G	p.Leu108Val	p.L108V	ENST00000074304	NM_001134224.1	108	Ctt/Gtt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056435	26056435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	112	487	0	ENST00000343677.2:c.222G>C	p.Glu74Asp	p.E74D	ENST00000343677	NM_005319.3	74	gaG/gaC																																																																														
TOP1	7150	MSKCC	GRCh37	20	39657738	39657738	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0034941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	24	397	0	ENST00000361337.2:c.31C>A	p.Gln11Lys	p.Q11K	ENST00000361337	NM_003286.2	11	Cag/Aag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933048	39933048	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034941-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	31	560	0	ENST00000378444.4:c.1551C>G	p.Asn517Lys	p.N517K	ENST00000378444	NM_001123385.1	517	aaC/aaG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	100	772	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0038507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	70	544	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	175	810	0	ENST00000269305.4:c.596del	p.Gly199GlufsTer48	p.G199Efs*48	ENST00000269305	NM_001126112.2	199	gGa/ga																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695884	117695884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	67	870	0	ENST00000369458.3:c.553G>T	p.Val185Phe	p.V185F	ENST00000369458	NM_024626.3	185	Gtt/Ttt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40353827	40353827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	104	805	0	ENST00000293328.3:c.2293G>A	p.Val765Ile	p.V765I	ENST00000293328	NM_012448.3	765	Gta/Ata																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213005	39213005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1344	116	905	0	ENST00000402219.2:c.3962G>C	p.Arg1321Thr	p.R1321T	ENST00000402219	NM_005633.3	1321	aGa/aCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	51	565	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057947	27057948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	378	688	0	ENST00000324856.7:c.1656dupA	p.Gln553ThrfsTer70	p.Q553Tfs*70	ENST00000324856	NM_006015.4	552	tca/tcAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573537	48573537	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	22	391	0	ENST00000342988.3:c.121G>T	p.Glu41Ter	p.E41*	ENST00000342988	NM_005359.5	41	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022983	27022984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	40	28	0	ENST00000324856.7:c.90dup	p.Gln31AlafsTer80	p.Q31Afs*80	ENST00000324856	NM_006015.4	30	cag/caGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446409	49446409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	224	820	0	ENST00000301067.7:c.1196G>A	p.Gly399Glu	p.G399E	ENST00000301067	NM_003482.3	399	gGg/gAg																																																																														
HGF	3082	MSKCC	GRCh37	7	81381528	81381528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	31	438	0	ENST00000222390.5:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000222390	NM_000601.4	178	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	28	548	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0038512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	36	677	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368223	45368223	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	31	563	1	ENST00000262160.6:c.1379C>A	p.Ser460Ter	p.S460*	ENST00000262160	NM_005901.5	460	tCa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	285	552	2	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	354	881	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
TSC1	7248	MSKCC	GRCh37	9	135801080	135801080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	116	710	0	ENST00000298552.3:c.257G>A	p.Arg86His	p.R86H	ENST00000298552	NM_001162426.1	86	cGt/cAt																																																																														
RET	5979	MSKCC	GRCh37	10	43615117	43615117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	123	1085	0	ENST00000355710.3:c.2531G>A	p.Arg844Gln	p.R844Q	ENST00000355710	NM_020975.4	844	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1279449	1279449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	81	1169	1	ENST00000310581.5:c.2087G>A	p.Arg696His	p.R696H	ENST00000310581	NM_198253.2	696	cGt/cAt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675668	86675669	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	213	431	0	ENST00000274376.6:c.2603+2dup		p.X868_splice	ENST00000274376	NM_002890.2	868																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922682	44922682	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	101	253	0	ENST00000377967.4:c.1543G>C	p.Val515Leu	p.V515L	ENST00000377967	NM_021140.2	515	Gtt/Ctt																																																																														
TET1	80312	MSKCC	GRCh37	10	70451272	70451272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	502	914	2	ENST00000373644.4:c.6112C>T	p.Arg2038Cys	p.R2038C	ENST00000373644	NM_030625.2	2038	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	111	839	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974770	21974770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	26	262	0	ENST00000304494.5:c.57del	p.Ala20ArgfsTer6	p.A20Rfs*6	ENST00000304494	NM_000077.4	19	gcC/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974770	21974770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	26	262	0	ENST00000304494.5:c.57del	p.Ala20ArgfsTer6	p.A20Rfs*6	ENST00000304494	NM_000077.4	19	gcC/gc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	131	592	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	63	448	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	80	484	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	23	410	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	36	335	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	59	485	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
AKT1	207	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	70	798	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193094340	193094340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	37	273	1	ENST00000367435.3:c.230G>A	p.Arg77His	p.R77H	ENST00000367435	NM_024529.4	77	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	44	492	2	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	29	343	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934190	39934190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146403660		P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	86	649	0	ENST00000378444.4:c.409G>A	p.Val137Ile	p.V137I	ENST00000378444	NM_001123385.1	137	Gtc/Atc																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983228	149983228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	34	512	0	ENST00000253339.5:c.3030delT	p.Phe1010LeufsTer10	p.F1010Lfs*10	ENST00000253339		1010	ttT/tt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	57	416	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	78	552	4	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468185	120468185	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	65	606	1	ENST00000256646.2:c.4254delC	p.Ser1419AlafsTer8	p.S1419Afs*8	ENST00000256646	NM_024408.3	1418	ccC/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505462	157505462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	68	410	0	ENST00000346085.5:c.3443A>G	p.Tyr1148Cys	p.Y1148C	ENST00000346085	NM_020732.3	1148	tAc/tGc																																																																														
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	50	464	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	46	450	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2488147	2488147	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	85	600	0	ENST00000355716.4:c.48del	p.Thr18ProfsTer4	p.T18Pfs*4	ENST00000355716	NM_003820.2	15	aCc/ac																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33433413	33433413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs80116829		P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	89	519	0	ENST00000335858.7:c.232G>A	p.Ala78Thr	p.A78T	ENST00000335858	NM_133629.2	78	Gcc/Acc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	25	395	1	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216380	7216380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	40	623	1	ENST00000380728.2:c.868delC	p.Gln290SerfsTer55	p.Q290Sfs*55	ENST00000380728		290	Cag/ag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	45	422	0	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	13	237	0	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39278343	39278343	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	79	583	0	ENST00000402219.2:c.806T>A	p.Met269Lys	p.M269K	ENST00000402219	NM_005633.3	269	aTg/aAg																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	85	447	3	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	83	640	2	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376683	118376683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149340870		P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	26	440	2	ENST00000534358.1:c.10076C>T	p.Ala3359Val	p.A3359V	ENST00000534358	NM_005933.3	3359	gCg/gTg																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792404	33792404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	38	693	2	ENST00000498907.2:c.917G>A	p.Arg306His	p.R306H	ENST00000498907	NM_004364.3	306	cGc/cAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	364669	364669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	129	588	0	ENST00000262320.3:c.893G>A	p.Arg298Gln	p.R298Q	ENST00000262320	NM_003502.3	298	cGg/cAg																																																																														
TET2	54790	MSKCC	GRCh37	4	106197245	106197245	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	32	302	0	ENST00000380013.4:c.5582del	p.Gly1861GlufsTer26	p.G1861Efs*26	ENST00000380013	NM_001127208.2	1860	Ggg/gg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991602	72991602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	50	603	1	ENST00000268489.5:c.2443G>A	p.Val815Met	p.V815M	ENST00000268489	NM_006885.3	815	Gtg/Atg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860074	57860075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	86	805	0	ENST00000228682.2:c.821dupG	p.Cys275LeufsTer32	p.C275Lfs*32	ENST00000228682	NM_005269.2	272	tgg/tGgg																																																																														
CASP8	841	MSKCC	GRCh37	2	202149819	202149819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	58	540	0	ENST00000358485.4:c.1264del	p.Asp422IlefsTer19	p.D422Ifs*19	ENST00000358485	NM_001080125.1	420	caG/ca																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932050	39932050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	92	594	2	ENST00000378444.4:c.2549G>A	p.Arg850His	p.R850H	ENST00000378444	NM_001123385.1	850	cGt/cAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180041137	180041137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	92	815	0	ENST00000261937.6:c.3262G>A	p.Asp1088Asn	p.D1088N	ENST00000261937	NM_182925.4	1088	Gac/Aac																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166146	118166146	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	25	360	0	ENST00000369448.3:c.656T>C	p.Phe219Ser	p.F219S	ENST00000369448	NM_017709.3	219	tTt/tCt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120496261	120496261	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	32	396	0	ENST00000256646.2:c.2270A>G	p.Asp757Gly	p.D757G	ENST00000256646	NM_024408.3	757	gAc/gGc																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551483	150551483	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	57	777	0	ENST00000369026.2:c.524A>G	p.Tyr175Cys	p.Y175C	ENST00000369026	NM_021960.4	175	tAc/tGc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731028	162731028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	48	308	0	ENST00000367921.3:c.883G>A	p.Gly295Ser	p.G295S	ENST00000367921	NM_006182.2	295	Ggt/Agt																																																																														
RET	5979	MSKCC	GRCh37	10	43620404	43620404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	53	483	0	ENST00000355710.3:c.3013C>A	p.Leu1005Met	p.L1005M	ENST00000355710	NM_020975.4	1005	Ctg/Atg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310932	123310932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	27	373	0	ENST00000358487.5:c.496C>T	p.Leu166Phe	p.L166F	ENST00000358487	NM_000141.4	166	Ctc/Ttc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424177	49424177	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	20	417	2	ENST00000301067.7:c.13885A>C	p.Thr4629Pro	p.T4629P	ENST00000301067	NM_003482.3	4629	Acc/Ccc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858986	57858986	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	48	617	0	ENST00000228682.2:c.485del	p.Gly162ValfsTer3	p.G162Vfs*3	ENST00000228682	NM_005269.2	161	cGg/cg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134040	41134040	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	44	423	1	ENST00000379561.5:c.1588C>T	p.Gln530Ter	p.Q530*	ENST00000379561	NM_002015.3	530	Cag/Tag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569829	95569829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	17	287	0	ENST00000343455.3:c.3904A>G	p.Thr1302Ala	p.T1302A	ENST00000343455	NM_177438.2	1302	Act/Gct																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807822	3807822	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	78	395	1	ENST00000262367.5:c.3597C>A	p.Cys1199Ter	p.C1199*	ENST00000262367	NM_004380.2	1199	tgC/tgA																																																																														
NUP93	9688	MSKCC	GRCh37	16	56862947	56862947	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	68	424	0	ENST00000308159.5:c.856del	p.Val286CysfsTer12	p.V286Cfs*12	ENST00000308159	NM_014669.4	285	Ggg/gg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56871568	56871568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	89	508	0	ENST00000308159.5:c.1948G>A	p.Val650Ile	p.V650I	ENST00000308159	NM_014669.4	650	Gtc/Atc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829320	72829320	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	32	582	0	ENST00000268489.5:c.7261T>C	p.Ser2421Pro	p.S2421P	ENST00000268489	NM_006885.3	2421	Tca/Cca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830884	72830885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	63	507	1	ENST00000268489.5:c.5696dup	p.Glu1900ArgfsTer29	p.E1900Rfs*29	ENST00000268489	NM_006885.3	1899	gga/ggGa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991671	72991671	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	97	437	0	ENST00000268489.5:c.2374del	p.Ala792ProfsTer32	p.A792Pfs*32	ENST00000268489	NM_006885.3	792	Gcc/cc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974887	15974887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	58	400	0	ENST00000268712.3:c.3988G>T	p.Gly1330Cys	p.G1330C	ENST00000268712	NM_006311.3	1330	Ggt/Tgt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16049809	16049809	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	23	350	0	ENST00000268712.3:c.963del	p.Val322TrpfsTer4	p.V322Wfs*4	ENST00000268712	NM_006311.3	321	aaA/aa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534382	63534382	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	86	651	0	ENST00000307078.5:c.1139delA	p.Lys380SerfsTer2	p.K380Sfs*2	ENST00000307078	NM_004655.3	380	aAg/ag																																																																														
CARM1	10498	MSKCC	GRCh37	19	11032344	11032344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	115	674	1	ENST00000327064.4:c.1738G>A	p.Val580Ile	p.V580I	ENST00000327064	NM_199141.1	580	Gtc/Atc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14629004	14629004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	32	586	0	ENST00000254322.2:c.158A>G	p.Asp53Gly	p.D53G	ENST00000254322	NM_006145.1	53	gAc/gGc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905088	50905088	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	79	743	0	ENST00000440232.2:c.370del	p.Val124CysfsTer45	p.V124Cfs*45	ENST00000440232	NM_002691.3	124	Gtg/tg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463547	25463547	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	67	568	1	ENST00000264709.3:c.2135A>T	p.Asp712Val	p.D712V	ENST00000264709	NM_175629.2	712	gAc/gTc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698162	47698162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	69	314	0	ENST00000233146.2:c.1720C>T	p.Gln574Ter	p.Q574*	ENST00000233146	NM_000251.2	574	Cag/Tag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48032130	48032130	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	23	275	0	ENST00000234420.5:c.3520T>C	p.Phe1174Leu	p.F1174L	ENST00000234420	NM_000179.2	1174	Ttt/Ctt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660270	227660270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	33	574	2	ENST00000305123.5:c.3185del	p.Gly1062AlafsTer8	p.G1062Afs*8	ENST00000305123	NM_005544.2	1062	gGc/gc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661112	227661112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	95	675	1	ENST00000305123.5:c.2343G>T	p.Glu781Asp	p.E781D	ENST00000305123	NM_005544.2	781	gaG/gaT																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662845	227662845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	49	602	1	ENST00000305123.5:c.610G>A	p.Val204Met	p.V204M	ENST00000305123	NM_005544.2	204	Gtg/Atg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39726854	39726854	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	24	145	0	ENST00000361337.2:c.853-1G>T		p.X285_splice	ENST00000361337	NM_003286.2	285																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630678	187630678	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	61	564	0	ENST00000441802.2:c.304G>T	p.Gly102Ter	p.G102*	ENST00000441802	NM_005245.3	102	Gga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1294231	1294231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	37	630	0	ENST00000310581.5:c.770C>T	p.Ala257Val	p.A257V	ENST00000310581	NM_198253.2	257	gCc/gTc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57750546	57750546	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	26	363	0	ENST00000274289.3:c.1922A>T	p.Tyr641Phe	p.Y641F	ENST00000274289	NM_006622.3	641	tAc/tTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672970	30672971	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	78	739	0	ENST00000376406.3:c.3989dup	p.Glu1331Ter	p.E1331*	ENST00000376406	NM_014641.2	1330	cct/ccCt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163791	32163791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	71	551	0	ENST00000375023.3:c.5435A>G	p.His1812Arg	p.H1812R	ENST00000375023	NM_004557.3	1812	cAc/cGc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289244	33289244	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200370559		P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	35	506	1	ENST00000374542.5:c.308C>T	p.Ala103Val	p.A103V	ENST00000374542	NM_001141970.1	103	gCg/gTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099301	157099301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	26	374	0	ENST00000346085.5:c.238C>T	p.Pro80Ser	p.P80S	ENST00000346085	NM_020732.3	80	Ccc/Tcc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15821891	15821891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	32	390	0	ENST00000307771.7:c.284C>A	p.Ala95Glu	p.A95E	ENST00000307771	NM_005089.3	95	gCg/gAg																																																																														
ARAF	369	MSKCC	GRCh37	X	47424502	47424502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	47	558	0	ENST00000377045.4:c.422C>A	p.Pro141His	p.P141H	ENST00000377045	NM_001654.4	141	cCc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70344989	70344989	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	53	511	2	ENST00000374080.3:c.2219T>C	p.Ile740Thr	p.I740T	ENST00000374080		740	aTc/aCc																																																																														
MED12	9968	MSKCC	GRCh37	X	70347244	70347244	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	69	506	0	ENST00000374080.3:c.2908T>C	p.Cys970Arg	p.C970R	ENST00000374080		970	Tgt/Cgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	18	292	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0038521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	42	580	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370985	55370985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	56	561	0	ENST00000297316.4:c.287C>G	p.Ala96Gly	p.A96G	ENST00000297316	NM_022454.3	96	gCc/gGc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259397	11259397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	86	519	0	ENST00000361445.4:c.4171C>G	p.Arg1391Gly	p.R1391G	ENST00000361445	NM_004958.3	1391	Cga/Gga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685269	89685269	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0038521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	14	157	0	ENST00000371953.3:c.165-1G>A		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56482552	56482552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	42	551	0	ENST00000267101.3:c.1009G>C	p.Gly337Arg	p.G337R	ENST00000267101	NM_001982.3	337	Ggg/Cgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692792	89692792	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	61	315	0	ENST00000371953.3:c.276C>G	p.Asp92Glu	p.D92E	ENST00000371953	NM_000314.4	92	gaC/gaG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105546	27105547	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0038521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	86	416	0	ENST00000324856.7:c.5158_5159del	p.Phe1720ProfsTer6	p.F1720Pfs*6	ENST00000324856	NM_006015.4	1719	taTTtc/tatc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163584	47163584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	12	251	0	ENST00000409792.3:c.2542G>T	p.Ala848Ser	p.A848S	ENST00000409792	NM_014159.6	848	Gca/Tca																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591147	67591147	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	45	280	0	ENST00000274335.5:c.1740C>G	p.Tyr580Ter	p.Y580*	ENST00000274335		580	taC/taG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	22	444	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574032	7574032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0038526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	147	564	0	ENST00000269305.4:c.995T>G	p.Ile332Ser	p.I332S	ENST00000269305	NM_001126112.2	332	aTc/aGc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244508	41244509	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0038526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	137	520	0	ENST00000357654.3:c.3039_3040del	p.Glu1013AspfsTer4	p.E1013Dfs*4	ENST00000357654	NM_007294.3	1013	gaAAtg/gatg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275843	38275843	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	100	532	0	ENST00000425967.3:c.1426C>G	p.Arg476Gly	p.R476G	ENST00000425967	NM_001174067.1	476	Cgg/Ggg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	130	318	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652121	36652122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	160	599	0	ENST00000244741.5:c.247dupC	p.Arg83ProfsTer6	p.R83Pfs*6	ENST00000244741	NM_000389.4	81	-/C																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101401	27101402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	36	446	0	ENST00000324856.7:c.4689dup	p.Met1564HisfsTer8	p.M1564Hfs*8	ENST00000324856	NM_006015.4	1561	-/C																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868316	56868317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	78	234	0	ENST00000308159.5:c.1699_1700insA	p.Leu567HisfsTer6	p.L567Hfs*6	ENST00000308159	NM_014669.4	567	ctg/cAtg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940913	49940913	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	126	646	0	ENST00000296474.3:c.130T>C	p.Tyr44His	p.Y44H	ENST00000296474	NM_002447.2	44	Tac/Cac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259350	89259350	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	98	365	0	ENST00000336596.2:c.494A>G	p.Asn165Ser	p.N165S	ENST00000336596	NM_005233.5	165	aAc/aGc																																																																														
ATR	545	MSKCC	GRCh37	3	142274739	142274739	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	65	245	0	ENST00000350721.4:c.2321T>A	p.Ile774Lys	p.I774K	ENST00000350721	NM_001184.3	774	aTa/aAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692844	89692844	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	26	142	0	ENST00000371953.3:c.328C>T	p.Gln110Ter	p.Q110*	ENST00000371953	NM_000314.4	110	Caa/Taa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	63	329	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	37	434	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
ALK	238	MSKCC	GRCh37	2	29416659	29416659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	37	343	0	ENST00000389048.3:c.4294C>T	p.Arg1432Trp	p.R1432W	ENST00000389048	NM_004304.4	1432	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428052	49428052	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	54	508	0	ENST00000301067.7:c.10538G>A	p.Trp3513Ter	p.W3513*	ENST00000301067	NM_003482.3	3513	tGg/tAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29560134	29560134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	29	262	0	ENST00000358273.4:c.3611G>A	p.Arg1204Gln	p.R1204Q	ENST00000358273	NM_001042492.2	1204	cGg/cAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	78	234	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560464	95560464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	84	349	0	ENST00000343455.3:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000343455	NM_177438.2	1709	Gat/Aat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572555	95572555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	36	148	0	ENST00000343455.3:c.2810G>A	p.Arg937His	p.R937H	ENST00000343455	NM_177438.2	937	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711873	89711873	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0038532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	35	316	0	ENST00000371953.3:c.493-2A>G		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27107135	27107136	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0038532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	106	389	0	ENST00000324856.7:c.6746_6747del	p.Ser2249Ter	p.S2249*	ENST00000324856	NM_006015.4	2249	tCA/t																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711957	89711957	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	52	356	0	ENST00000371953.3:c.575del	p.Ala192AspfsTer7	p.A192Dfs*7	ENST00000371953	NM_000314.4	192	gCa/ga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593246	67593247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCGA			P-0038532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	43	182	0	ENST00000274335.5:c.1993_1997dup	p.Val667AlafsTer3	p.V667Afs*3	ENST00000274335		664	-/GGCGA																																																																														
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	419	778	0	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118955	70118955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	197	703	0	ENST00000245479.2:c.527C>T	p.Pro176Leu	p.P176L	ENST00000245479	NM_000346.3	176	cCg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944554	40944554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	93	440	0	ENST00000373198.4:c.1948G>A	p.Val650Met	p.V650M	ENST00000373198	NM_133170.3	650	Gtg/Atg																																																																														
ATRX	546	MSKCC	GRCh37	X	76855025	76855026	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0038771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	225	445	0	ENST00000373344.5:c.5810_5811del	p.Gly1937GlufsTer4	p.G1937Efs*4	ENST00000373344	NM_000489.3	1937	gGG/g																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145736819	145736819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41555416		P-0038826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	95	509	0	ENST00000428558.2:c.3622C>T	p.Arg1208Cys	p.R1208C	ENST00000428558	NM_004260.3	1208	Cgc/Tgc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923343	131923343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	17	240	0	ENST00000265335.6:c.846G>A	p.Met282Ile	p.M282I	ENST00000265335		282	atG/atA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11181390	11181390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	32	600	0	ENST00000361445.4:c.6846G>C	p.Gln2282His	p.Q2282H	ENST00000361445	NM_004958.3	2282	caG/caC																																																																														
STK40	83931	MSKCC	GRCh37	1	36824355	36824355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	31	515	0	ENST00000373129.3:c.181G>C	p.Asp61His	p.D61H	ENST00000373129	NM_032017.1	61	Gac/Cac																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724472	162724472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	29	475	0	ENST00000367921.3:c.244G>A	p.Asp82Asn	p.D82N	ENST00000367921	NM_006182.2	82	Gac/Aac																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725544	162725544	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	22	320	0	ENST00000367921.3:c.656G>C	p.Gly219Ala	p.G219A	ENST00000367921	NM_006182.2	219	gGa/gCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433287	49433287	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	313	710	0	ENST00000301067.7:c.8160G>A	p.Trp2720Ter	p.W2720*	ENST00000301067	NM_003482.3	2720	tgG/tgA																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589353	28589353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	22	415	0	ENST00000241453.7:c.2694C>G	p.Phe898Leu	p.F898L	ENST00000241453	NM_004119.2	898	ttC/ttG																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777855	3777855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	88	881	0	ENST00000262367.5:c.7193G>A	p.Gly2398Glu	p.G2398E	ENST00000262367	NM_004380.2	2398	gGa/gAa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31406964	31406964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	140	513	0	ENST00000344624.3:c.3943C>T	p.Pro1315Ser	p.P1315S	ENST00000344624		1315	Cca/Tca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0021574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			168	265	472	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864656	37864656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	264	779	1	ENST00000269571.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000269571		103	cGa/cAa																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117690306	117690306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			306	132	420	0	ENST00000369458.3:c.823C>G	p.Leu275Val	p.L275V	ENST00000369458	NM_024626.3	275	Ctc/Gtc																																																																														
FYN	2534	MSKCC	GRCh37	6	112035575	112035575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			354	122	320	0	ENST00000368678.4:c.319G>C	p.Glu107Gln	p.E107Q	ENST00000368678		107	Gaa/Caa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137830	64137830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1501	368	1156	1	ENST00000334205.4:c.1931C>T	p.Ser644Phe	p.S644F	ENST00000334205	NM_003942.2	644	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425644	49425644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			776	242	765	1	ENST00000301067.7:c.12844C>T	p.Arg4282Ter	p.R4282*	ENST00000301067	NM_003482.3	4282	Cga/Tga																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199864	138199864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			543	141	436	0	ENST00000237289.4:c.1282G>C	p.Glu428Gln	p.E428Q	ENST00000237289	NM_001270507.1	428	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448173	49448173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			617	182	652	0	ENST00000301067.7:c.427G>A	p.Ala143Thr	p.A143T	ENST00000301067	NM_003482.3	143	Gct/Act																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211836	2211836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			500	469	742	0	ENST00000398665.3:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000398665	NM_032482.2	518	Gag/Aag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243262	123243262	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			619	245	882	0	ENST00000358487.5:c.2251A>G	p.Lys751Glu	p.K751E	ENST00000358487	NM_000141.4	751	Aag/Gag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8404558	8404558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021574-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			288	47	235	0	ENST00000356435.5:c.4189G>T	p.Val1397Phe	p.V1397F	ENST00000356435		1397	Gtt/Ttt																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	129	264	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	241	602	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	59	439	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	147	740	2	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028656	12028656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	80	426	0	ENST00000353533.5:c.859C>T	p.Arg287Cys	p.R287C	ENST00000353533	NM_003010.3	287	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	26	251	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	61	782	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
RARA	5914	MSKCC	GRCh37	17	38510606	38510606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	61	981	1	ENST00000254066.5:c.860C>T	p.Ser287Leu	p.S287L	ENST00000254066	NM_000964.3	287	tCg/tTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004735	16004735	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	89	902	1	ENST00000268712.3:c.2519del	p.Asn840IlefsTer23	p.N840Ifs*23	ENST00000268712	NM_006311.3	840	aAt/at																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676339	37676339	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0038406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	62	649	0	ENST00000447079.4:c.3094G>C	p.Asp1032His	p.D1032H	ENST00000447079	NM_015083.1	1032	Gac/Cac																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5563181	5563183	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0038406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	48	505	0	ENST00000397747.3:c.789_791del	p.Thr265del	p.T265del	ENST00000397747	NM_025239.3	262	gtCACc/gtc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918502	44918502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	103	416	0	ENST00000377967.4:c.985C>T	p.Gln329Ter	p.Q329*	ENST00000377967	NM_021140.2	329	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692818	89692818	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	212	304	0	ENST00000371953.3:c.302T>C	p.Ile101Thr	p.I101T	ENST00000371953	NM_000314.4	101	aTc/aCc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	469	708	1	ENST00000322088.6:c.767C>A	p.Ser256Tyr	p.S256Y	ENST00000322088	NM_014225.5	256	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	1078	878	2	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588197	69588197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	172	799	0	ENST00000168712.1:c.501C>A	p.Asn167Lys	p.N167K	ENST00000168712	NM_002007.2	167	aaC/aaA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591227	67591289	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAAGAAGTTGAACGA	CTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAAGAAGTTGAACGA	-			P-0038407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	66	390	0	ENST00000274335.5:c.1746-21_1787del		p.X582_splice	ENST00000274335		582																																																																															
HIST1H3C	8352	MSKCC	GRCh37	6	26045687	26045687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	54	308	0	ENST00000540144.1:c.49C>G	p.Pro17Ala	p.P17A	ENST00000540144	NM_003531.2	17	Ccg/Gcg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462051	120462051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	326	568	0	ENST00000256646.2:c.5665C>T	p.Arg1889Trp	p.R1889W	ENST00000256646	NM_024408.3	1889	Cgg/Tgg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857692	9857692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1389208302		P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	214	501	1	ENST00000330684.3:c.3709G>A	p.Asp1237Asn	p.D1237N	ENST00000330684	NM_001134407.1	1237	Gat/Aat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	423	395	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
NF2	4771	MSKCC	GRCh37	22	30032739	30032739	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	179	309	0	ENST00000338641.4:c.115-1G>C		p.X39_splice	ENST00000338641	NM_000268.3	39																																																																															
IL7R	3575	MSKCC	GRCh37	5	35875648	35875648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	149	356	0	ENST00000303115.3:c.835C>T	p.His279Tyr	p.H279Y	ENST00000303115	NM_002185.3	279	Cat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485897	8485897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	206	439	0	ENST00000356435.5:c.2920C>T	p.Pro974Ser	p.P974S	ENST00000356435		974	Cca/Tca																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866441	42866441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	505	960	1	ENST00000398585.3:c.191C>T	p.Pro64Leu	p.P64L	ENST00000398585	NM_001135099.1	64	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	196	211	0				ENST00000310581	NM_198253.2																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71939259	71939259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	320	758	0	ENST00000298229.2:c.208C>T	p.Arg70Cys	p.R70C	ENST00000298229	NM_001567.3	70	Cgc/Tgc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644561	21644561	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	268	433	0	ENST00000421138.2:c.106A>T	p.Ile36Phe	p.I36F	ENST00000421138		36	Att/Ttt																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110644	4110644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	285	553	1	ENST00000262948.5:c.313C>T	p.Leu105Phe	p.L105F	ENST00000262948	NM_030662.3	105	Ctt/Ttt																																																																														
TP63	8626	MSKCC	GRCh37	3	189586434	189586434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	242	460	0	ENST00000264731.3:c.1058A>G	p.Lys353Arg	p.K353R	ENST00000264731	NM_003722.4	353	aAg/aGg																																																																														
NPM1	4869	MSKCC	GRCh37	5	170832349	170832349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	517	439	0	ENST00000296930.5:c.713C>T	p.Pro238Leu	p.P238L	ENST00000296930	NM_002520.6	238	cCa/cTa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805731	32805731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	374	759	0	ENST00000374899.4:c.280G>C	p.Val94Leu	p.V94L	ENST00000374899	NM_018833.2	94	Gtc/Ctc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151932981	151932981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2698613		P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	61	50	0	ENST00000262189.6:c.2690G>A	p.Arg897Gln	p.R897Q	ENST00000262189	NM_170606.2	897	cGa/cAa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894815	101894815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	173	315	0	ENST00000374994.4:c.368C>T	p.Pro123Leu	p.P123L	ENST00000374994	NM_004612.2	123	cCt/cTt																																																																														
ARAF	369	MSKCC	GRCh37	X	47426073	47426073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	477	426	0	ENST00000377045.4:c.593C>T	p.Pro198Leu	p.P198L	ENST00000377045	NM_001654.4	198	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	130	686	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	81	293	0				ENST00000310581	NM_198253.2																																																																																
ERBB4	2066	MSKCC	GRCh37	2	212576871	212576871	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	28	555	0	ENST00000342788.4:c.1028T>A	p.Met343Lys	p.M343K	ENST00000342788	NM_005235.2	343	aTg/aAg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62325742	62325742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	56	765	0	ENST00000508582.2:c.3082C>T	p.Pro1028Ser	p.P1028S	ENST00000508582		1028	Ccc/Tcc																																																																														
SESN1	27244	MSKCC	GRCh37	6	109309771	109309771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	52	619	0	ENST00000436639.2:c.1544G>A	p.Trp515Ter	p.W515*	ENST00000436639	NM_014454.2	515	tGg/tAg																																																																														
RB1	5925	MSKCC	GRCh37	13	48942673	48942673	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	42	353	0	ENST00000267163.4:c.1060del	p.Gln354ArgfsTer13	p.Q354Rfs*13	ENST00000267163	NM_000321.2	354	Cag/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	410	896	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0038412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	182	577	2	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858503	57858523	+	inframe_deletion	In_Frame_Del	DEL	CGGGCACTGTCCATCTCACCT	CGGGCACTGTCCATCTCACCT	-			P-0038412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	51	897	0	ENST00000228682.2:c.242_262del	p.Arg81_Pro87del	p.R81_P87del	ENST00000228682	NM_005269.2	81	CGGGCACTGTCCATCTCACCT/-																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643216	38643216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0038412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	137	385	0	ENST00000299084.4:c.686T>C	p.Val229Ala	p.V229A	ENST00000299084	NM_152594.2	229	gTc/gCc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141456	11141456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	362	979	0	ENST00000344626.4:c.3433C>A	p.Pro1145Thr	p.P1145T	ENST00000344626	NM_003072.3	1145	Ccc/Acc																																																																														
HGF	3082	MSKCC	GRCh37	7	81381555	81381555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	44	365	0	ENST00000222390.5:c.506G>T	p.Gly169Val	p.G169V	ENST00000222390	NM_000601.4	169	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	257	293	1				ENST00000310581	NM_198253.2																																																																																
SOX17	64321	MSKCC	GRCh37	8	55371972	55371972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	67	323	0	ENST00000297316.4:c.662C>T	p.Thr221Met	p.T221M	ENST00000297316	NM_022454.3	221	aCg/aTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781811	3781818	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGACAG	TGGGACAG	-			P-0038414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	65	767	0	ENST00000262367.5:c.4849_4856del	p.Leu1617GlufsTer40	p.L1617Efs*40	ENST00000262367	NM_004380.2	1617	CTGTCCCAg/g																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3799676	3799676	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0038414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	177	418	0	ENST00000262367.5:c.3788C>G	p.Ser1263Ter	p.S1263*	ENST00000262367	NM_004380.2	1263	tCa/tGa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215606	5215606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	96	731	0	ENST00000357368.4:c.4097G>T	p.Ser1366Ile	p.S1366I	ENST00000357368	NM_002850.3	1366	aGc/aTc																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271230	26271230	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs150252598		P-0038414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	68	618	0	ENST00000305910.3:c.383C>G	p.Ala128Gly	p.A128G	ENST00000305910	NM_003534.2	128	gCt/gGt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964370	93964370	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	126	540	0	ENST00000369303.4:c.2527C>G	p.Gln843Glu	p.Q843E	ENST00000369303	NM_004440.3	843	Caa/Gaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76889085	76889085	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	33	273	0	ENST00000373344.5:c.4925A>C	p.Gln1642Pro	p.Q1642P	ENST00000373344	NM_000489.3	1642	cAa/cCa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215380	123215380	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0038414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	187	236	0	ENST00000218089.9:c.2924+2T>C		p.X975_splice	ENST00000218089	NM_001042749.1	975																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55155196	55155196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	66	721	1	ENST00000257290.5:c.2795G>A	p.Cys932Tyr	p.C932Y	ENST00000257290	NM_006206.4	932	tGc/tAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78704450	78704450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	65	679	0	ENST00000306801.3:c.598G>A	p.Gly200Ser	p.G200S	ENST00000306801	NM_020761.2	200	Ggc/Agc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2978404	2978404	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	66	1022	0	ENST00000396946.4:c.926G>C	p.Arg309Pro	p.R309P	ENST00000396946	NM_032415.4	309	cGc/cCc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319853	8319853	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	67	471	0	ENST00000356435.5:c.5648G>C	p.Arg1883Pro	p.R1883P	ENST00000356435		1883	cGa/cCa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	60	577	0	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0038419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	235	676	1	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027647	48027647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	56	364	0	ENST00000234420.5:c.2525C>T	p.Ala842Val	p.A842V	ENST00000234420	NM_000179.2	842	gCt/gTt																																																																														
MYC	4609	MSKCC	GRCh37	8	128750749	128750750	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0038419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	96	791	0	ENST00000377970.2:c.286_287delinsAT	p.Ser96Ile	p.S96I	ENST00000377970	NM_002467.4	96	TCc/ATc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	563	777	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121434596		P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	203	555	0	ENST00000369535.4:c.38G>T	p.Gly13Val	p.G13V	ENST00000369535	NM_002524.4	13	gGt/gTt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	178	555	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720735	89720736	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	38	226	0	ENST00000371953.3:c.887dup	p.Cys296TrpfsTer2	p.C296Wfs*2	ENST00000371953	NM_000314.4	296	tgt/tGgt																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741897	17741897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	76	155	0	ENST00000250003.3:c.568G>A	p.Gly190Ser	p.G190S	ENST00000250003	NM_002478.4	190	Ggc/Agc																																																																														
ATM	472	MSKCC	GRCh37	11	108117833	108117833	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	87	448	0	ENST00000278616.4:c.1044G>C	p.Leu348Phe	p.L348F	ENST00000278616	NM_000051.3	348	ttG/ttC																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967567	26967567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	119	550	0	ENST00000381527.3:c.710G>A	p.Arg237Gln	p.R237Q	ENST00000381527	NM_001260.1	237	cGa/cAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068433	26068433	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	105	421	0	ENST00000435504.4:c.58-1G>C		p.X20_splice	ENST00000435504		20																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591145	67591145	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	88	461	0	ENST00000274335.5:c.1738T>G	p.Tyr580Asp	p.Y580D	ENST00000274335		580	Tac/Gac																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	130	539	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175780	112175780	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	111	390	0	ENST00000257430.4:c.4490del	p.Pro1497GlnfsTer10	p.P1497Qfs*10	ENST00000257430	NM_000038.5	1497	Cca/ca																																																																														
ATRX	546	MSKCC	GRCh37	X	76764088	76764088	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	110	643	0	ENST00000373344.5:c.7220G>C	p.Arg2407Pro	p.R2407P	ENST00000373344	NM_000489.3	2407	cGa/cCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	25	461	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0038457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	134	418	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936097	178936097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	35	564	0	ENST00000263967.3:c.1639G>C	p.Glu547Gln	p.E547Q	ENST00000263967	NM_006218.2	547	Gag/Cag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440330	52440333	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0038457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	199	531	0	ENST00000460680.1:c.719_722del	p.Lys240MetfsTer8	p.K240Mfs*8	ENST00000460680	NM_004656.3	240	aAGTAt/at																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916636	178916636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	149	287	0	ENST00000263967.3:c.23G>C	p.Gly8Ala	p.G8A	ENST00000263967	NM_006218.2	8	gGt/gCt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484269	8484269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	72	356	1	ENST00000356435.5:c.3263G>A	p.Arg1088His	p.R1088H	ENST00000356435		1088	cGt/cAt																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006228	22006228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	226	523	1	ENST00000276925.6:c.175G>A	p.Ala59Thr	p.A59T	ENST00000276925	NM_004936.3	59	Gcc/Acc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770575	40770575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	69	362	0	ENST00000373198.4:c.2807G>C	p.Arg936Pro	p.R936P	ENST00000373198	NM_133170.3	936	cGa/cCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	30	350	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	43	643	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	376	672	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	241	677	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098962	178098962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	47	282	0	ENST00000397062.3:c.83T>C	p.Ile28Thr	p.I28T	ENST00000397062	NM_006164.4	28	aTa/aCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420490	49420490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	174	715	0	ENST00000301067.7:c.15259G>A	p.Gly5087Arg	p.G5087R	ENST00000301067	NM_003482.3	5087	Gga/Aga																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813325	102813325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	137	602	0	ENST00000307046.8:c.364C>A	p.Arg122Ser	p.R122S	ENST00000307046	NM_001111285.1	122	Cgt/Agt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134329	2134329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	180	957	0	ENST00000219476.3:c.4106G>T	p.Arg1369Leu	p.R1369L	ENST00000219476	NM_000548.3	1369	cGg/cTg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279597	18279597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	179	786	0	ENST00000222254.8:c.1870G>T	p.Val624Leu	p.V624L	ENST00000222254	NM_005027.3	624	Gtg/Ttg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31372645	31372645	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	125	630	0	ENST00000328111.2:c.286A>T	p.Thr96Ser	p.T96S	ENST00000328111	NM_006892.3	96	Act/Tct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162021	47162021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	71	371	0	ENST00000409792.3:c.4105G>T	p.Ala1369Ser	p.A1369S	ENST00000409792	NM_014159.6	1369	Gca/Tca																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155270	55155270	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	85	432	0	ENST00000257290.5:c.2869C>A	p.Gln957Lys	p.Q957K	ENST00000257290	NM_006206.4	957	Caa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1294382	1294382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	171	822	2	ENST00000310581.5:c.619G>T	p.Val207Phe	p.V207F	ENST00000310581	NM_198253.2	207	Gtc/Ttc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971146	21971146	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	118	519	0	ENST00000304494.5:c.212A>T	p.Asn71Ile	p.N71I	ENST00000304494	NM_000077.4	71	aAc/aTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971146	21971146	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	118	519	0	ENST00000304494.5:c.212A>T	p.Asn71Ile	p.N71I	ENST00000304494	NM_000077.4	71	aAc/aTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971146	21971146	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	118	519	0	ENST00000304494.5:c.212A>T	p.Asn71Ile	p.N71I	ENST00000304494	NM_000077.4	71	aAc/aTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412259	63412259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	190	472	0	ENST00000330258.3:c.908G>T	p.Gly303Val	p.G303V	ENST00000330258	NM_152424.3	303	gGc/gTc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37646891	37646891	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024325-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	335	708	0	ENST00000447079.4:c.2015del	p.Pro672LeufsTer81	p.P672Lfs*81	ENST00000447079	NM_015083.1	671	ctC/ct																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618691	37618691	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024325-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	310	575	0	ENST00000447079.4:c.367del	p.Leu123Ter	p.L123*	ENST00000447079	NM_015083.1	123	Cta/ta																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	325	879	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
SYK	6850	MSKCC	GRCh37	9	93650044	93650044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	206	506	0	ENST00000375746.1:c.1595G>A	p.Gly532Glu	p.G532E	ENST00000375746	NM_001174167.1	532	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	163	454	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193104673	193104673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	170	385	0	ENST00000367435.3:c.377G>A	p.Arg126Gln	p.R126Q	ENST00000367435	NM_024529.4	126	cGa/cAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492599	56492829	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCGTGTATGGTATTTCATTTGGGAGACAAAAGAAGAAAGACATATTTCAAACAGATGGAAAGTGAAATATAATAAAGTTATACTTGCCTGCATTAATTTTCCTTCTGCTGGAGTTATTTCAGCAACACCAGCAAACACACCTTCCAAAGTGAGATTCAGTTTTCCTGTGGGGTCCATTTTCAAGGGGATCACTCTGATAATAGCTTTCTGTTCTGCTGATCTTTCAGACT	CCCGTGTATGGTATTTCATTTGGGAGACAAAAGAAGAAAGACATATTTCAAACAGATGGAAAGTGAAATATAATAAAGTTATACTTGCCTGCATTAATTTTCCTTCTGCTGGAGTTATTTCAGCAACACCAGCAAACACACCTTCCAAAGTGAGATTCAGTTTTCCTGTGGGGTCCATTTTCAAGGGGATCACTCTGATAATAGCTTTCTGTTCTGCTGATCTTTCAGACT	-			P-0038161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	38	158	0	ENST00000407977.2:c.110_252+88del		p.X37_splice	ENST00000407977		37																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5240269	5240269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	250	983	1	ENST00000357368.4:c.1645C>T	p.Arg549Trp	p.R549W	ENST00000357368	NM_002850.3	549	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221276	36221276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	287	874	1	ENST00000222270.7:c.5110C>T	p.Arg1704Cys	p.R1704C	ENST00000222270	NM_014727.1	1704	Cgc/Tgc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253860	153253860	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	154	333	0	ENST00000281708.4:c.873T>A	p.Tyr291Ter	p.Y291*	ENST00000281708	NM_033632.3	291	taT/taA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845679	151845679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	189	570	0	ENST00000262189.6:c.13333G>A	p.Gly4445Ser	p.G4445S	ENST00000262189	NM_170606.2	4445	Ggt/Agt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	263	394	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735458	40735458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	581	655	1	ENST00000373198.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000373198	NM_133170.3	1139	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578476	7578477	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGTGT			P-0038162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	652	827	0	ENST00000269305.4:c.448_453dup	p.Thr150_Pro151dup	p.T150_P151dup	ENST00000269305	NM_001126112.2	150	-/ACACCC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578464	7578464	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	241	937	0	ENST00000269305.4:c.466delC	p.Arg156AlafsTer14	p.R156Afs*14	ENST00000269305	NM_001126112.2	156	Cgc/gc																																																																														
TERT	7015	MSKCC	GRCh37	5	1278779	1278779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	171	728	0	ENST00000310581.5:c.2263G>A	p.Val755Ile	p.V755I	ENST00000310581	NM_198253.2	755	Gtc/Atc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914234	32914234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	64	522	0	ENST00000380152.3:c.5742C>A	p.Ser1914Arg	p.S1914R	ENST00000380152		1914	agC/agA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991508	72991508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	194	827	0	ENST00000268489.5:c.2537G>A	p.Arg846His	p.R846H	ENST00000268489	NM_006885.3	846	cGc/cAc																																																																														
PGR	5241	MSKCC	GRCh37	11	100999693	100999693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	271	1079	0	ENST00000325455.5:c.109C>A	p.Pro37Thr	p.P37T	ENST00000325455	NM_001202474.3	37	Ccg/Acg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760962	59760962	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	218	691	0	ENST00000259008.2:c.3445C>G	p.Leu1149Val	p.L1149V	ENST00000259008	NM_032043.2	1149	Cta/Gta																																																																														
KDR	3791	MSKCC	GRCh37	4	55980411	55980411	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	105	326	0	ENST00000263923.4:c.680T>G	p.Val227Gly	p.V227G	ENST00000263923	NM_002253.2	227	gTt/gGt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683801	117683801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	146	458	0	ENST00000368508.3:c.3346G>A	p.Glu1116Lys	p.E1116K	ENST00000368508	NM_002944.2	1116	Gaa/Aaa																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983305	149983305	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	191	591	0	ENST00000253339.5:c.2953A>T	p.Ile985Phe	p.I985F	ENST00000253339		985	Att/Ttt																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309769	30309769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	34	580	0	ENST00000307677.4:c.253G>T	p.Ala85Ser	p.A85S	ENST00000307677	NM_138578.1	85	Gca/Tca																																																																														
ATRX	546	MSKCC	GRCh37	X	76939244	76939244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	37	418	0	ENST00000373344.5:c.1504C>T	p.Pro502Ser	p.P502S	ENST00000373344	NM_000489.3	502	Cct/Tct																																																																														
TP63	8626	MSKCC	GRCh37	3	189586470	189586470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	72	419	0	ENST00000264731.3:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000264731	NM_003722.4	365	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	901	429	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	271	752	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12038874	12038874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	150	327	0	ENST00000396373.4:c.1167G>T	p.Met389Ile	p.M389I	ENST00000396373	NM_001987.4	389	atG/atT																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986531	36986532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	254	668	0	ENST00000354822.5:c.1157dup	p.Asp386GlufsTer53	p.D386Efs*53	ENST00000354822	NM_001079668.2	386	gac/gaAc																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1182	329	838	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	139	574	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872219	45872219	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	118	758	0	ENST00000391945.4:c.215A>G	p.Tyr72Cys	p.Y72C	ENST00000391945	NM_000400.3	72	tAc/tGc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843447	3843447	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	138	484	1	ENST00000262367.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000262367	NM_004380.2	386	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	119	501	0	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	119	501	0	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	149	453	1				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27023796	27023796	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	120	426	0	ENST00000324856.7:c.902C>A	p.Ser301Ter	p.S301*	ENST00000324856	NM_006015.4	301	tCg/tAg																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117690312	117690312	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	111	495	0	ENST00000369458.3:c.817C>G	p.Leu273Val	p.L273V	ENST00000369458	NM_024626.3	273	Ctg/Gtg																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94204901	94204901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	63	382	0	ENST00000323929.3:c.684C>G	p.Phe228Leu	p.F228L	ENST00000323929	NM_005591.3	228	ttC/ttG																																																																														
ETV6	2120	MSKCC	GRCh37	12	12006384	12006384	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	37	442	0	ENST00000396373.4:c.352C>G	p.Gln118Glu	p.Q118E	ENST00000396373	NM_001987.4	118	Cag/Gag																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480590	50480590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	107	515	0	ENST00000394963.4:c.460G>A	p.Glu154Lys	p.E154K	ENST00000394963	NM_003076.4	154	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943626	9943626	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	78	594	0	ENST00000330684.3:c.1315T>G	p.Phe439Val	p.F439V	ENST00000330684	NM_001134407.1	439	Ttc/Gtc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991398	72991398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	228	807	1	ENST00000268489.5:c.2647G>A	p.Asp883Asn	p.D883N	ENST00000268489	NM_006885.3	883	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578218	7578218	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	198	776	0	ENST00000269305.4:c.631A>C	p.Thr211Pro	p.T211P	ENST00000269305	NM_001126112.2	211	Act/Cct																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58678001	58678001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	63	186	0	ENST00000305921.3:c.226C>T	p.Arg76Cys	p.R76C	ENST00000305921	NM_003620.3	76	Cgc/Tgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129635	11129635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	211	642	0	ENST00000344626.4:c.2441C>A	p.Thr814Lys	p.T814K	ENST00000344626	NM_003072.3	814	aCg/aAg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719823	61719823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	157	571	0	ENST00000401558.2:c.1445A>G	p.Asn482Ser	p.N482S	ENST00000401558	NM_003400.3	482	aAt/aGt																																																																														
CRKL	1399	MSKCC	GRCh37	22	21304089	21304089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	155	665	0	ENST00000354336.3:c.868C>T	p.His290Tyr	p.H290Y	ENST00000354336	NM_005207.3	290	Cac/Tac																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22221673	22221673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	57	143	0	ENST00000215832.6:c.58G>A	p.Asp20Asn	p.D20N	ENST00000215832	NM_002745.4	20	Gac/Aac																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643777	52643777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	106	577	0	ENST00000394830.3:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000394830	NM_018313.4	707	Gaa/Aaa																																																																														
KIT	3815	MSKCC	GRCh37	4	55524186	55524186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	148	516	0	ENST00000288135.5:c.5G>A	p.Arg2Lys	p.R2K	ENST00000288135	NM_000222.2	2	aGa/aAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527514	157527514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	57	525	0	ENST00000346085.5:c.5239G>A	p.Asp1747Asn	p.D1747N	ENST00000346085	NM_020732.3	1747	Gat/Aat																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	204	788	0	ENST00000481739.1:c.1280C>A	p.Ser427Tyr	p.S427Y	ENST00000481739	NM_002957.4	427	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	265	755	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682384	37682384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	327	645	0	ENST00000447079.4:c.3575del	p.Ala1192GlufsTer23	p.A1192Efs*23	ENST00000447079	NM_015083.1	1192	gCa/ga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216504	36216504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	201	791	0	ENST00000222270.7:c.3767G>A	p.Gly1256Glu	p.G1256E	ENST00000222270	NM_014727.1	1256	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	162	459	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	234	481	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	234	481	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	249	674	0	ENST00000269305.4:c.569C>G	p.Pro190Arg	p.P190R	ENST00000269305	NM_001126112.2	190	cCt/cGt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257170	16257170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	63	551	0	ENST00000375759.3:c.4435G>A	p.Asp1479Asn	p.D1479N	ENST00000375759	NM_015001.2	1479	Gat/Aat																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584543	48584544	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	259	506	0	ENST00000342988.3:c.717_718del	p.Gln239HisfsTer24	p.Q239Hfs*24	ENST00000342988	NM_005359.5	239	cAG/c																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566300	141566300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	175	483	0	ENST00000220592.5:c.1112C>T	p.Ser371Leu	p.S371L	ENST00000220592	NM_012154.3	371	tCg/tTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971192	21971193	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GCCCATCATC			P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	189	499	0	ENST00000361570.3:c.322_331dup	p.Gln111ArgfsTer2	p.Q111Rfs*2	ENST00000361570	NM_058195.3	111	cag/cGATGATGGGCag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971192	21971193	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GCCCATCATC			P-0038371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	189	499	0	ENST00000361570.3:c.322_331dup	p.Gln111ArgfsTer2	p.Q111Rfs*2	ENST00000361570	NM_058195.3	111	cag/cGATGATGGGCag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	299	729	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938932	178938932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	99	394	0	ENST00000263967.3:c.2174A>G	p.Asp725Gly	p.D725G	ENST00000263967	NM_006218.2	725	gAt/gGt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056455	26056455	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61751205		P-0038374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	47	286	1	ENST00000343677.2:c.202G>A	p.Ala68Thr	p.A68T	ENST00000343677	NM_005319.3	68	Gcc/Acc																																																																														
XIAP	331	MSKCC	GRCh37	X	123020138	123020138	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	359	702	0	ENST00000355640.3:c.626A>T	p.Asn209Ile	p.N209I	ENST00000355640		209	aAt/aTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	82	385	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391024	89391024	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	111	551	0	ENST00000336596.2:c.1095delA	p.Lys365AsnfsTer6	p.K365Nfs*6	ENST00000336596	NM_005233.5	364	Aaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	134	616	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	68	344	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16042434	16042434	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	91	458	0	ENST00000268712.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000268712	NM_006311.3	414	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	90	444	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	87	495	1	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	54	268	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	277	662	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	88	427	0	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																																																														
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	77	418	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																														
B2M	567	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	32	268	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	134	726	0	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																																																														
INSR	3643	MSKCC	GRCh37	19	7125379	7125379	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs778982272		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	125	668	1	ENST00000302850.5:c.3173C>T	p.Thr1058Met	p.T1058M	ENST00000302850	NM_000208.2	1058	aCg/aTg																																																																														
ERG	2078	MSKCC	GRCh37	21	39772564	39772564	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	71	360	0	ENST00000288319.7:c.677delG	p.Gly226ValfsTer65	p.G226Vfs*65	ENST00000288319	NM_182918.3	226	gGt/gt																																																																														
RHOA	387	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	110	671	0	ENST00000418115.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000418115	NM_001664.2	42	tAt/tGt																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	58	453	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346391	73346391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	49	279	0	ENST00000377767.4:c.1409T>C	p.Leu470Pro	p.L470P	ENST00000377767	NM_014953.3	470	cTg/cCg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18524120	18524120	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	49	338	0	ENST00000266497.5:c.1635del	p.Glu548LysfsTer2	p.E548Kfs*2	ENST00000266497		544	aaT/aa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	12	93	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175957465	175957465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	85	415	0	ENST00000367669.3:c.1931del	p.Asn644ThrfsTer3	p.N644Tfs*3	ENST00000367669	NM_022457.5	644	aAc/ac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	70	455	0	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332699	153332699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	89	402	0	ENST00000281708.4:c.257C>T	p.Ser86Leu	p.S86L	ENST00000281708	NM_033632.3	86	tCg/tTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	105	681	5	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	114	536	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	96	638	0	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143181675	143181675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	104	418	0	ENST00000262992.4:c.658G>A	p.Gly220Arg	p.G220R	ENST00000262992	NM_001101669.1	220	Gga/Aga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271193	153271193	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	37	222	0	ENST00000281708.4:c.584+1G>A		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	217	618	1	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39709868	39709870	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	48	277	0	ENST00000361337.2:c.504_506del	p.Glu169del	p.E169del	ENST00000361337	NM_003286.2	165	ctAGAa/cta																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31405819	31405819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	64	240	1	ENST00000344624.3:c.3959C>T	p.Ala1320Val	p.A1320V	ENST00000344624		1320	gCg/gTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81973526	81973526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	89	487	0	ENST00000359376.3:c.3343C>T	p.Pro1115Ser	p.P1115S	ENST00000359376	NM_002661.3	1115	Cca/Tca																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25536847	25536847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	91	562	0	ENST00000264709.3:c.7G>A	p.Ala3Thr	p.A3T	ENST00000264709	NM_175629.2	3	Gcc/Acc																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345760	152345760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	65	241	1	ENST00000359321.1:c.810del	p.Phe270LeufsTer27	p.F270Lfs*27	ENST00000359321	NM_005431.1	270	ttT/tt																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792437	33792437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	115	537	1	ENST00000498907.2:c.884C>T	p.Ala295Val	p.A295V	ENST00000498907	NM_004364.3	295	gCg/gTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420327	88420327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	60	405	1	ENST00000360948.2:c.2359C>T	p.Arg787Cys	p.R787C	ENST00000360948	NM_001012338.2	787	Cgt/Tgt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	91	675	5	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94197307	94197308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	67	426	0	ENST00000323929.3:c.1196dup	p.Arg400GlnfsTer3	p.R400Qfs*3	ENST00000323929	NM_005591.3	399	ttc/ttTc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163315547	163315547	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	65	432	0	ENST00000271452.3:c.887A>G	p.Tyr296Cys	p.Y296C	ENST00000271452	NM_145697.2	296	tAt/tGt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243675627	243675627	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	62	211	0	ENST00000263826.5:c.1353del	p.Lys451AsnfsTer55	p.K451Nfs*55	ENST00000263826	NM_005465.4	451	aaA/aa																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205580	61205580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	86	396	0	ENST00000301761.2:c.365C>T	p.Ala122Val	p.A122V	ENST00000301761	NM_017841.2	122	gCc/gTc																																																																														
ATM	472	MSKCC	GRCh37	11	108224603	108224603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	59	331	0	ENST00000278616.4:c.8782A>G	p.Arg2928Gly	p.R2928G	ENST00000278616	NM_000051.3	2928	Aga/Gga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2113013	2113013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	139	624	2	ENST00000219476.3:c.1402G>A	p.Val468Met	p.V468M	ENST00000219476	NM_000548.3	468	Gtg/Atg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858561	9858561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	114	493	0	ENST00000330684.3:c.2840G>T	p.Arg947Met	p.R947M	ENST00000330684	NM_001134407.1	947	aGg/aTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348494	89348494	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189656772		P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	130	661	0	ENST00000301030.4:c.4456C>T	p.Arg1486Trp	p.R1486W	ENST00000301030	NM_001256183.1	1486	Cgg/Tgg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117882	70117882	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	102	501	1	ENST00000245479.2:c.350A>G	p.Gln117Arg	p.Q117R	ENST00000245479	NM_000346.3	117	cAg/cGg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216587	2216587	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	153	643	0	ENST00000398665.3:c.2231A>G	p.Asp744Gly	p.D744G	ENST00000398665	NM_032482.2	744	gAc/gGc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244269	5244269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	118	619	0	ENST00000357368.4:c.1213G>A	p.Val405Ile	p.V405I	ENST00000357368	NM_002850.3	405	Gtc/Atc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600036	10600036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	137	579	0	ENST00000171111.5:c.1540G>A	p.Val514Ile	p.V514I	ENST00000171111	NM_203500.1	514	Gtc/Atc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123724	11123724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	122	568	0	ENST00000344626.4:c.2374C>T	p.Leu792Phe	p.L792F	ENST00000344626	NM_003072.3	792	Ctc/Ttc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627645	14627645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	125	538	0	ENST00000254322.2:c.425C>T	p.Thr142Ile	p.T142I	ENST00000254322	NM_006145.1	142	aCc/aTc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026891	48026891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	88	407	1	ENST00000234420.5:c.1769C>A	p.Pro590His	p.P590H	ENST00000234420	NM_000179.2	590	cCc/cAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41545790	41545790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	134	558	0	ENST00000263253.7:c.2405C>T	p.Pro802Leu	p.P802L	ENST00000263253	NM_001429.3	802	cCg/cTg																																																																														
SDHA	6389	MSKCC	GRCh37	5	231052	231052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	74	346	0	ENST00000264932.6:c.832G>T	p.Ala278Ser	p.A278S	ENST00000264932	NM_004168.2	278	Gcc/Tcc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181757	56181758	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	45	272	0	ENST00000399503.3:c.3986dup		p.X1329_splice	ENST00000399503	NM_005921.1	1329																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67588186	67588186	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	53	285	1	ENST00000274335.5:c.1016C>A	p.Ser339Ter	p.S339*	ENST00000274335		339	tCg/tAg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048241	180048241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	128	591	0	ENST00000261937.6:c.2032C>T	p.Pro678Ser	p.P678S	ENST00000261937	NM_182925.4	678	Cct/Tct																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730017	41730017	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	86	561	0	ENST00000242208.4:c.512T>C	p.Val171Ala	p.V171A	ENST00000242208	NM_002192.2	171	gTc/gCc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741961	145741961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	102	609	0	ENST00000428558.2:c.542A>G	p.Gln181Arg	p.Q181R	ENST00000428558	NM_004260.3	181	cAg/cGg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409841	63409841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	62	481	0	ENST00000330258.3:c.3326T>C	p.Leu1109Pro	p.L1109P	ENST00000330258	NM_152424.3	1109	cTg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	31	534	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813361	102813361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	65	597	0	ENST00000307046.8:c.328G>A	p.Ala110Thr	p.A110T	ENST00000307046	NM_001111285.1	110	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	105	587	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	60	439	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	50	401	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521481	8521481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	113	544	0	ENST00000356435.5:c.757G>A	p.Val253Ile	p.V253I	ENST00000356435		253	Gtt/Att																																																																														
APC	324	MSKCC	GRCh37	5	112175879	112175880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	40	269	0	ENST00000257430.4:c.4592dup	p.Asn1531LysfsTer2	p.N1531Kfs*2	ENST00000257430	NM_000038.5	1530	gaa/gAaa																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	65	557	0	ENST00000368323.3:c.270G>C	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atC																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645156	67645156	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	81	686	0	ENST00000264010.4:c.421G>T	p.Glu141Ter	p.E141*	ENST00000264010	NM_006565.3	141	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0038593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	94	220	0				ENST00000310581	NM_198253.2																																																																																
SPEN	23013	MSKCC	GRCh37	1	16257464	16257464	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	37	475	1	ENST00000375759.3:c.4729C>T	p.Gln1577Ter	p.Q1577*	ENST00000375759	NM_015001.2	1577	Caa/Taa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942160	71942160	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	87	858	0	ENST00000298229.2:c.1424C>A	p.Ser475Ter	p.S475*	ENST00000298229	NM_001567.3	475	tCa/tAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431031	49431031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	64	637	1	ENST00000301067.7:c.10108C>A	p.Gln3370Lys	p.Q3370K	ENST00000301067	NM_003482.3	3370	Cag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440063	49440063	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	79	746	0	ENST00000301067.7:c.4563C>G	p.Ile1521Met	p.I1521M	ENST00000301067	NM_003482.3	1521	atC/atG																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658644	3658644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1345	88	813	0	ENST00000294008.3:c.322G>C	p.Glu108Gln	p.E108Q	ENST00000294008	NM_032444.2	108	Gag/Cag																																																																														
NF1	4763	MSKCC	GRCh37	17	29653151	29653151	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	72	331	0	ENST00000358273.4:c.5149G>C	p.Glu1717Gln	p.E1717Q	ENST00000358273	NM_001042492.2	1717	Gag/Cag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37083790	37083790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	34	316	0	ENST00000231790.2:c.1699G>C	p.Asp567His	p.D567H	ENST00000231790	NM_000249.3	567	Gat/Cat																																																																														
RHOA	387	MSKCC	GRCh37	3	49412945	49412950	+	inframe_deletion	In_Frame_Del	DEL	GCTGAA	GCTGAA	-			P-0038593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	79	690	0	ENST00000418115.1:c.73_78del	p.Phe25_Ser26del	p.F25_S26del	ENST00000418115	NM_001664.2	25	TTCAGC/-																																																																														
ATR	545	MSKCC	GRCh37	3	142281484	142281484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	79	561	1	ENST00000350721.4:c.760G>C	p.Glu254Gln	p.E254Q	ENST00000350721	NM_001184.3	254	Gaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	94	399	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579312	7579313	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GT			P-0038594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	91	644	0	ENST00000269305.4:c.373_374dup	p.Tyr126ArgfsTer45	p.Y126Rfs*45	ENST00000269305	NM_001126112.2	125	acg/acACg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332838	153332841	+	frameshift_variant	Frame_Shift_Del	DEL	CCTC	CCTC	-			P-0038594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	73	405	0	ENST00000281708.4:c.115_118del	p.Glu39AsnfsTer23	p.E39Nfs*23	ENST00000281708	NM_033632.3	39	GAGGaa/aa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	242	481	0	ENST00000288135.5:c.1669T>A	p.Trp557Arg	p.W557R	ENST00000288135	NM_000222.2	557	Tgg/Agg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	92	220	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	252	518	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	269	578	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	304	249	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
AKT3	10000	MSKCC	GRCh37	1	243801005	243801005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	133	355	0	ENST00000263826.5:c.469G>T	p.Gly157Cys	p.G157C	ENST00000263826	NM_005465.4	157	Ggc/Tgc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375445	118375445	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	136	287	0	ENST00000534358.1:c.8839del	p.Gln2947ArgfsTer6	p.Q2947Rfs*6	ENST00000534358	NM_005933.3	2946	agC/ag																																																																														
CBL	867	MSKCC	GRCh37	11	119077194	119077194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	212	452	0	ENST00000264033.4:c.67G>C	p.Gly23Arg	p.G23R	ENST00000264033	NM_005188.3	23	Ggt/Cgt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008287	29008287	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	121	286	0	ENST00000282397.4:c.584C>A	p.Ser195Ter	p.S195*	ENST00000282397	NM_002019.4	195	tCa/tAa																																																																														
RB1	5925	MSKCC	GRCh37	13	48939044	48939044	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	87	163	0	ENST00000267163.4:c.876T>A	p.Tyr292Ter	p.Y292*	ENST00000267163	NM_000321.2	292	taT/taA																																																																														
NUP93	9688	MSKCC	GRCh37	16	56866282	56866282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	44	271	0	ENST00000308159.5:c.1327C>G	p.Gln443Glu	p.Q443E	ENST00000308159	NM_014669.4	443	Cag/Gag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216153	36216153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	247	614	1	ENST00000222270.7:c.3561G>T	p.Met1187Ile	p.M1187I	ENST00000222270	NM_014727.1	1187	atG/atT																																																																														
ALK	238	MSKCC	GRCh37	2	29917742	29917742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	270	636	0	ENST00000389048.3:c.926C>T	p.Ala309Val	p.A309V	ENST00000389048	NM_004304.4	309	gCa/gTa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39751890	39751890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	42	447	0	ENST00000361337.2:c.2251A>C	p.Lys751Gln	p.K751Q	ENST00000361337	NM_003286.2	751	Aag/Cag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306647	41306647	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	253	727	0	ENST00000373198.4:c.1012C>G	p.His338Asp	p.H338D	ENST00000373198	NM_133170.3	338	Cac/Gac																																																																														
KDR	3791	MSKCC	GRCh37	4	55971098	55971098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	247	485	0	ENST00000263923.4:c.1699G>C	p.Val567Leu	p.V567L	ENST00000263923	NM_002253.2	567	Gtg/Ctg																																																																														
TEK	7010	MSKCC	GRCh37	9	27173259	27173259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	268	658	0	ENST00000380036.4:c.800G>A	p.Arg267Lys	p.R267K	ENST00000380036	NM_000459.3	267	aGg/aAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044507	47044508	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0038602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	296	350	0	ENST00000329236.7:c.1770_1771del	p.Phe591GlnfsTer3	p.F591Qfs*3	ENST00000329236	NM_001204466.1	590	aaCTtc/aatc																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0038616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	76	239	1	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553668	106553668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	69	427	1	ENST00000369096.4:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000369096	NM_001198.3	545	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	119	638	0	ENST00000269305.4:c.761T>C	p.Ile254Thr	p.I254T	ENST00000269305	NM_001126112.2	254	aTc/aCc																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912046	127912046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	60	367	0	ENST00000373547.4:c.824A>G	p.Lys275Arg	p.K275R	ENST00000373547	NM_002721.4	275	aAa/aGa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	51	357	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134920325	134920325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	26	311	0	ENST00000398015.3:c.2140G>A	p.Gly714Arg	p.G714R	ENST00000398015	NM_004441.4	714	Ggg/Agg																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612879	228612879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	37	597	0	ENST00000366696.1:c.148C>T	p.Arg50Cys	p.R50C	ENST00000366696	NM_003493.2	50	Cgc/Tgc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961295	15961295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	59	454	0	ENST00000268712.3:c.6094C>T	p.Pro2032Ser	p.P2032S	ENST00000268712	NM_006311.3	2032	Cct/Tct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440698	56440698	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	58	538	1	ENST00000407977.2:c.520del	p.Glu174SerfsTer11	p.E174Sfs*11	ENST00000407977		174	Gag/ag																																																																														
ERF	2077	MSKCC	GRCh37	19	42753539	42753539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	56	650	0	ENST00000222329.4:c.725C>A	p.Pro242His	p.P242H	ENST00000222329	NM_006494.2	242	cCt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250928	153250928	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	24	204	0	ENST00000281708.4:c.1132G>T	p.Gly378Ter	p.G378*	ENST00000281708	NM_033632.3	378	Gga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743924	40743924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199514226		P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	169	426	1	ENST00000373198.4:c.3071C>T	p.Thr1024Met	p.T1024M	ENST00000373198	NM_133170.3	1024	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112151245	112151246	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	111	375	0	ENST00000257430.4:c.893_894del	p.His298LeufsTer28	p.H298Lfs*28	ENST00000257430	NM_000038.5	296	agCAca/agca																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925328	114925328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	135	463	0	ENST00000543371.1:c.1406G>A	p.Cys469Tyr	p.C469Y	ENST00000543371	NM_001198531.1	469	tGc/tAc																																																																														
ATM	472	MSKCC	GRCh37	11	108202221	108202221	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	104	397	0	ENST00000278616.4:c.7566A>T	p.Gln2522His	p.Q2522H	ENST00000278616	NM_000051.3	2522	caA/caT																																																																														
ATM	472	MSKCC	GRCh37	11	108121634	108121634	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	151	408	0	ENST00000278616.4:c.1442T>G	p.Leu481Ter	p.L481*	ENST00000278616	NM_000051.3	481	tTa/tGa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913791	32913791	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	146	373	0	ENST00000380152.3:c.5299A>T	p.Lys1767Ter	p.K1767*	ENST00000380152		1767	Aaa/Taa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11114074	11114075	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	177	422	0	ENST00000344626.4:c.2001+2dup		p.X667_splice	ENST00000344626	NM_003072.3	667																																																																															
APC	324	MSKCC	GRCh37	5	112174370	112174371	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0038691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	70	223	0	ENST00000257430.4:c.3081_3082del	p.Tyr1027Ter	p.Y1027*	ENST00000257430	NM_000038.5	1027	TAt/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0011283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	160	767	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114917779	114917779	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	167	482	0	ENST00000543371.1:c.1270-1G>A		p.X424_splice	ENST00000543371	NM_001198531.1	424																																																																															
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0011283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	138	283	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537975	212537975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	156	423	1	ENST00000342788.4:c.1630C>T	p.Arg544Trp	p.R544W	ENST00000342788	NM_005235.2	544	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			922	189	565	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			974	564	711	3	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	128	408	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	287	803	21	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	42	451	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37081727	37081727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	142	570	1	ENST00000231790.2:c.1609C>T	p.Gln537Ter	p.Q537*	ENST00000231790	NM_000249.3	537	Cag/Tag																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	580	703	1	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																														
ATM	472	MSKCC	GRCh37	11	108164163	108164164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	34	242	0	ENST00000278616.4:c.4741dupA	p.Ile1581AsnfsTer5	p.I1581Nfs*5	ENST00000278616	NM_000051.3	1579	caa/cAaa																																																																														
RET	5979	MSKCC	GRCh37	10	43609084	43609086	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1412	346	913	2	ENST00000355710.3:c.1846_1848delGAG	p.Glu616del	p.E616del	ENST00000355710	NM_020975.4	614	GAG/-																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788609	3788609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	97	512	1	ENST00000262367.5:c.4345G>A	p.Val1449Ile	p.V1449I	ENST00000262367	NM_004380.2	1449	Gtt/Att																																																																														
IDH2	3418	MSKCC	GRCh37	15	90633831	90633831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1552	310	687	0	ENST00000330062.3:c.253G>A	p.Gly85Arg	p.G85R	ENST00000330062	NM_002168.2	85	Ggg/Agg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245139	41245142	+	frameshift_variant	Frame_Shift_Del	DEL	ACTC	ACTC	-			P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	66	782	0	ENST00000357654.3:c.2406_2409del	p.Gln804ValfsTer10	p.Q804Vfs*10	ENST00000357654	NM_007294.3	802	gtGAGT/gt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271813	15271813	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1557	384	879	0	ENST00000263388.2:c.6626del	p.Pro2209ArgfsTer37	p.P2209Rfs*37	ENST00000263388	NM_000435.2	2209	cCg/cg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546719	9546719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			626	83	417	0	ENST00000353224.5:c.1303G>A	p.Ala435Thr	p.A435T	ENST00000353224	NM_177990.2	435	Gcc/Acc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52662973	52662973	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033948-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	83	404	0	ENST00000394830.3:c.1380del	p.Lys460AsnfsTer15	p.K460Nfs*15	ENST00000394830	NM_018313.4	460	aaA/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	194	717	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0037987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	170	614	1	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868325	56868325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	58	407	0	ENST00000308159.5:c.1708G>T	p.Val570Leu	p.V570L	ENST00000308159	NM_014669.4	570	Gtg/Ttg																																																																														
APC	324	MSKCC	GRCh37	5	112175617	112175617	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	113	409	0	ENST00000257430.4:c.4326del	p.Pro1443LeufsTer30	p.P1443Lfs*30	ENST00000257430	NM_000038.5	1442	ccT/cc																																																																														
APC	324	MSKCC	GRCh37	5	112175658	112175658	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	109	399	0	ENST00000257430.4:c.4367A>T	p.Lys1456Ile	p.K1456I	ENST00000257430	NM_000038.5	1456	aAa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	429	779	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	243	545	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954933	2954933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	310	610	0	ENST00000396946.4:c.2777C>T	p.Pro926Leu	p.P926L	ENST00000396946	NM_032415.4	926	cCg/cTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135787720	135787720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	417	572	0	ENST00000298552.3:c.862C>T	p.Arg288Cys	p.R288C	ENST00000298552	NM_001162426.1	288	Cgt/Tgt																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72893564	72893564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	187	466	2	ENST00000325599.8:c.154C>T	p.Pro52Ser	p.P52S	ENST00000325599	NM_018130.2	52	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112175450	112175451	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0038388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	213	390	0	ENST00000257430.4:c.4159_4160insA	p.Cys1387Ter	p.C1387*	ENST00000257430	NM_000038.5	1387	tgt/tAgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	133	485	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81916879	81916879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	173	806	0	ENST00000359376.3:c.698C>T	p.Thr233Ile	p.T233I	ENST00000359376	NM_002661.3	233	aCt/aTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29556484	29556484	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	90	333	0	ENST00000358273.4:c.2850+1G>T		p.X950_splice	ENST00000358273	NM_001042492.2	950																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29912175	29912175	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	44	328	0	ENST00000376809.5:c.895+1G>T		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206658560	206658560	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	142	567	0	ENST00000367120.3:c.1533A>T	p.Gln511His	p.Q511H	ENST00000367120	NM_014002.3	511	caA/caT																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228613002	228613002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147766330		P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	221	506	0	ENST00000366696.1:c.25C>T	p.Arg9Cys	p.R9C	ENST00000366696	NM_003493.2	9	Cgc/Tgc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633616	69633616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	29	54	2	ENST00000334134.2:c.86C>T	p.Ala29Val	p.A29V	ENST00000334134	NM_005247.2	29	gCg/gTg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856655	111856655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	88	359	0	ENST00000341259.2:c.706G>T	p.Val236Leu	p.V236L	ENST00000341259	NM_005475.2	236	Gtg/Ttg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916193	9916193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	162	647	0	ENST00000330684.3:c.2096C>A	p.Pro699His	p.P699H	ENST00000330684	NM_001134407.1	699	cCc/cAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29657356	29657356	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	174	653	0	ENST00000358273.4:c.5652T>A	p.Phe1884Leu	p.F1884L	ENST00000358273	NM_001042492.2	1884	ttT/ttA																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485873	57485873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	124	422	0	ENST00000371085.3:c.1174G>A	p.Glu392Lys	p.E392K	ENST00000371085	NM_000516.4	392	Gag/Aag																																																																														
ERG	2078	MSKCC	GRCh37	21	39772567	39772567	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	85	457	0	ENST00000288319.7:c.674G>T	p.Gly225Val	p.G225V	ENST00000288319	NM_182918.3	225	gGg/gTg																																																																														
ATR	545	MSKCC	GRCh37	3	142238524	142238524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	68	338	0	ENST00000350721.4:c.4369C>A	p.His1457Asn	p.H1457N	ENST00000350721	NM_001184.3	1457	Cat/Aat																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374707	149374708	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	159	662	0	ENST00000360632.3:c.386dup	p.Trp130LeufsTer27	p.W130Lfs*27	ENST00000360632	NM_015472.4	129	ggc/ggGc																																																																														
TP63	8626	MSKCC	GRCh37	3	189584471	189584471	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	123	382	0	ENST00000264731.3:c.767G>T	p.Gly256Val	p.G256V	ENST00000264731	NM_003722.4	256	gGa/gTa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	142950058	142950058	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	104	407	0	ENST00000262992.4:c.2652C>A	p.Cys884Ter	p.C884*	ENST00000262992	NM_001101669.1	884	tgC/tgA																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729375	41729375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	179	707	0	ENST00000242208.4:c.1154C>T	p.Ala385Val	p.A385V	ENST00000242208	NM_002192.2	385	gCc/gTc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251243	99251243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	160	771	1	ENST00000268035.6:c.547C>T	p.Pro183Ser	p.P183S	ENST00000268035	NM_000875.3	183	Cca/Tca																																																																														
NPM1	4869	MSKCC	GRCh37	5	170827925	170827925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	57	681	1	ENST00000296930.5:c.665C>T	p.Ser222Leu	p.S222L	ENST00000296930	NM_002520.6	222	tCa/tTa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168997	32168997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	130	894	2	ENST00000375023.3:c.4036C>T	p.Arg1346Trp	p.R1346W	ENST00000375023	NM_004557.3	1346	Cgg/Tgg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932515	39932515	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	145	455	1	ENST00000378444.4:c.2084A>T	p.His695Leu	p.H695L	ENST00000378444	NM_001123385.1	695	cAc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	87	402	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	108	569	0	ENST00000371953.3:c.395G>A	p.Gly132Asp	p.G132D	ENST00000371953	NM_000314.4	132	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	319	914	0	ENST00000269305.4:c.398T>C	p.Met133Thr	p.M133T	ENST00000269305	NM_001126112.2	133	aTg/aCg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207621	2207621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	265	750	0	ENST00000398665.3:c.905C>T	p.Ser302Leu	p.S302L	ENST00000398665	NM_032482.2	302	tCg/tTg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267491	198267491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	92	361	0	ENST00000335508.6:c.1866G>T	p.Glu622Asp	p.E622D	ENST00000335508	NM_012433.2	622	gaG/gaT																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30323896	30323896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0038328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	72	271	0	ENST00000322652.5:c.1874G>C	p.Gly625Ala	p.G625A	ENST00000322652	NM_015355.2	625	gGg/gCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	209	181	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108206593	108206593	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	88	348	0	ENST00000278616.4:c.8173G>C	p.Asp2725His	p.D2725H	ENST00000278616	NM_000051.3	2725	Gat/Cat																																																																														
SPOP	8405	MSKCC	GRCh37	17	47685245	47685245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	119	415	0	ENST00000347630.2:c.705G>C	p.Glu235Asp	p.E235D	ENST00000347630	NM_001007230.1	235	gaG/gaC																																																																														
TP63	8626	MSKCC	GRCh37	3	189612212	189612212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	471	529	0	ENST00000264731.3:c.1964G>A	p.Arg655Gln	p.R655Q	ENST00000264731	NM_003722.4	655	cGa/cAa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878910	117878910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	75	408	1	ENST00000297338.2:c.59C>T	p.Ala20Val	p.A20V	ENST00000297338	NM_006265.2	20	gCg/gTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44937723	44937723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	69	565	1	ENST00000377967.4:c.2911C>T	p.Arg971Cys	p.R971C	ENST00000377967	NM_021140.2	971	Cgt/Tgt																																																																														
JUN	3725	MSKCC	GRCh37	1	59248525	59248525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	644	663	1	ENST00000371222.2:c.218C>T	p.Ser73Leu	p.S73L	ENST00000371222	NM_002228.3	73	tCg/tTg																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514038	69514038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1629	446	588	0	ENST00000294312.3:c.643G>C	p.Glu215Gln	p.E215Q	ENST00000294312	NM_005117.2	215	Gag/Cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106194	27106194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	528	553	0	ENST00000324856.7:c.5805del	p.Ser1936AlafsTer20	p.S1936Afs*20	ENST00000324856	NM_006015.4	1935	gaG/ga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946749	71946749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1289	263	707	0	ENST00000298229.2:c.2690G>C	p.Gly897Ala	p.G897A	ENST00000298229	NM_001567.3	897	gGa/gCa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864994	57864994	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	308	745	0	ENST00000228682.2:c.2471C>G	p.Ser824Cys	p.S824C	ENST00000228682	NM_005269.2	824	tCt/tGt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915295	32915295	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	73	696	0	ENST00000380152.3:c.6803G>C	p.Arg2268Thr	p.R2268T	ENST00000380152		2268	aGa/aCa																																																																														
BLM	641	MSKCC	GRCh37	15	91304079	91304079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	96	579	0	ENST00000355112.3:c.1476C>G	p.Phe492Leu	p.F492L	ENST00000355112	NM_000057.2	492	ttC/ttG																																																																														
CDH1	999	MSKCC	GRCh37	16	68867331	68867734	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GACTACTTGAACGAATGGGGCAATCGCTTCAAGAAGCTGGCTGACATGTACGGAGGCGGCGAGGACGACTAGGGGACTCGAGAGAGGCGGGCCCCAGACCCATGTGCTGGGAAATGCAGAAATCACGTTGCTGGTGGTTTTTCAGCTCCCTTCCCTTGAGATGAGTTTCTGGGGAAAAAAAAGAGACTGGTTAGTGATGCAGTTAGTATAGCTTTATACTCTCTCCACTTTATAGCTCTAATAAGTTTGTGTTAGAAAAGTTTCGACTTATTTCTTAAAGCTTTTTTTTTTTTCCCATCACTCTTTACATGGTGGTGATGTCCAAAAGATACCCAAATTTTAATATTCCAGAAGAACAACTTTAGCATCAGAAGGTTCACCCAGCACCTTGCAGATTTTCTTAA	GACTACTTGAACGAATGGGGCAATCGCTTCAAGAAGCTGGCTGACATGTACGGAGGCGGCGAGGACGACTAGGGGACTCGAGAGAGGCGGGCCCCAGACCCATGTGCTGGGAAATGCAGAAATCACGTTGCTGGTGGTTTTTCAGCTCCCTTCCCTTGAGATGAGTTTCTGGGGAAAAAAAAGAGACTGGTTAGTGATGCAGTTAGTATAGCTTTATACTCTCTCCACTTTATAGCTCTAATAAGTTTGTGTTAGAAAAGTTTCGACTTATTTCTTAAAGCTTTTTTTTTTTTCCCATCACTCTTTACATGGTGGTGATGTCCAAAAGATACCCAAATTTTAATATTCCAGAAGAACAACTTTAGCATCAGAAGGTTCACCCAGCACCTTGCAGATTTTCTTAA	-			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	97	537	0	ENST00000261769.5:c.2579_*333del		p.*860*	ENST00000261769	NM_004360.3	860																																																																															
PPM1D	8493	MSKCC	GRCh37	17	58740472	58740472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	245	586	0	ENST00000305921.3:c.1377del	p.Asn460MetfsTer5	p.N460Mfs*5	ENST00000305921	NM_003620.3	459	gaG/ga																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252940	36252940	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	208	429	1	ENST00000300305.3:c.422del	p.Ser141TrpfsTer4	p.S141Wfs*4	ENST00000300305		141	tCg/tg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38153395	38153395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	25	613	2	ENST00000317025.8:c.2834G>A	p.Gly945Asp	p.G945D	ENST00000317025	NM_023034.1	945	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	363	329	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	96	435	0	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856098	111856098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	76	266	0	ENST00000341259.2:c.149G>A	p.Arg50Gln	p.R50Q	ENST00000341259	NM_005475.2	50	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175248	112175249	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGA			P-0038331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	96	206	0	ENST00000257430.4:c.3959_3962dup	p.Val1323ArgfsTer10	p.V1323Rfs*10	ENST00000257430	NM_000038.5	1319	-/GTGA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577574	+	protein_altering_variant	In_Frame_Del	DEL	CACATGT	CACATGT	A			P-0038331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	224	497	1	ENST00000269305.4:c.707_713delinsT	p.Tyr236_Cys238delinsPhe	p.Y236_C238delinsF	ENST00000269305	NM_001126112.2	236	tACATGTGt/tTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	205	310	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	39	179	0				ENST00000310581	NM_198253.2																																																																																
STAG2	10735	MSKCC	GRCh37	X	123217380	123217380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	133	179	0	ENST00000218089.9:c.3034C>T	p.Arg1012Ter	p.R1012*	ENST00000218089	NM_001042749.1	1012	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993874	72993874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	59	433	0	ENST00000268489.5:c.171C>A	p.Phe57Leu	p.F57L	ENST00000268489	NM_006885.3	57	ttC/ttA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	238	625	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0038335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	123	413	0	ENST00000256078.4:c.34_35delGGinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226398	41226398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	60	620	0	ENST00000357654.3:c.4625C>G	p.Ser1542Cys	p.S1542C	ENST00000357654	NM_007294.3	1542	tCt/tGt																																																																														
ATM	472	MSKCC	GRCh37	11	108192140	108192141	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0038336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	69	506	0	ENST00000278616.4:c.6568_6569dup	p.Arg2191GlnfsTer45	p.R2191Qfs*45	ENST00000278616	NM_000051.3	2189	ttc/tTCtc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562112	21562113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	187	1074	0	ENST00000382592.4:c.1806dup	p.Lys603Ter	p.K603*	ENST00000382592	NM_014572.2	602	-/T																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005009	150006016	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAATACTTCCATTTGTATATGACGAAGGAGCAGCAGATCCCCCTGTTTGTAAAGCAGAAGGGCTTTGTCCATTAGCTGCTGTCAGAGGATATGGAGGTGGTGGCTGCCGATTCACAGTGCCAGCAGGGACAACATTTTGGTGTATCATGAAATCAGTTTGTCCAGTACCATTCTGCATTCCAGGTCTCCCTGATGGAAAGTTAAATTTGCTAGAACTCTGCATGATGATTGGTTGTCTGCCAACAGGAACAGAACTAATGCCTCTCTGTCCTTGATTAGGAGGATTCATGGGGGAAGTGTTGAGAGGTGGTGGAGGATAGCCCTCTTGCCATGCCCCAGGTGGGACAGGAGAGATTCGGGAGATTACGTATTCCATGTTTCCAGAATAGCGCTTTGTTTGAGAGTTTGGTTCCCATGAAGGGGGAGGTGGAGTTGTACCTCTTGGAGGGGGAGTCTGGCCTCTTGGAGGTGGTGGAGGAGTAACACTCCTTACTTGAGGTGGTGGTGGGGGGTTCACTCTCTGTCCGTTGCTAGGGTGAGCTTGAACAAATGCTGATATACCAGATCCAGACAAAGGTCTTCCTACATCTGTCTGTGAGTTGGGACTCTCAGAATGATAGGCCACACTTTCTCCTAGTGGCGGGCCATGCCTCTGAGGAACTAAGGATTCTTTAGAACCTTTCCAGCTCTGTTTGCGGTTAACTGATTGCTGCACATTCCCTATGGTTATAAGAGAGATAAAGAGAAAAAAGAATCATGTTTTTAACCTCTAATTTTTGAAAACCTTAGCTTGCAATTCTGATATTACAAATGATACTCAATTCTCTTTCAAGAATTATAAAAATATAAAAAAGTTCAAGTGATCTCTTGTACAAAATGGTGACTGTAGTTAATAACAACGTATTGTACTCCTGAAAATTGCCGAGAGTAAATTTGAAGTATTCTCACTACAAAAAAATGATATGTGAGGTAATAATACATGTTATTTGGCTCAATTTAGCAAAAAAA	GAATACTTCCATTTGTATATGACGAAGGAGCAGCAGATCCCCCTGTTTGTAAAGCAGAAGGGCTTTGTCCATTAGCTGCTGTCAGAGGATATGGAGGTGGTGGCTGCCGATTCACAGTGCCAGCAGGGACAACATTTTGGTGTATCATGAAATCAGTTTGTCCAGTACCATTCTGCATTCCAGGTCTCCCTGATGGAAAGTTAAATTTGCTAGAACTCTGCATGATGATTGGTTGTCTGCCAACAGGAACAGAACTAATGCCTCTCTGTCCTTGATTAGGAGGATTCATGGGGGAAGTGTTGAGAGGTGGTGGAGGATAGCCCTCTTGCCATGCCCCAGGTGGGACAGGAGAGATTCGGGAGATTACGTATTCCATGTTTCCAGAATAGCGCTTTGTTTGAGAGTTTGGTTCCCATGAAGGGGGAGGTGGAGTTGTACCTCTTGGAGGGGGAGTCTGGCCTCTTGGAGGTGGTGGAGGAGTAACACTCCTTACTTGAGGTGGTGGTGGGGGGTTCACTCTCTGTCCGTTGCTAGGGTGAGCTTGAACAAATGCTGATATACCAGATCCAGACAAAGGTCTTCCTACATCTGTCTGTGAGTTGGGACTCTCAGAATGATAGGCCACACTTTCTCCTAGTGGCGGGCCATGCCTCTGAGGAACTAAGGATTCTTTAGAACCTTTCCAGCTCTGTTTGCGGTTAACTGATTGCTGCACATTCCCTATGGTTATAAGAGAGATAAAGAGAAAAAAGAATCATGTTTTTAACCTCTAATTTTTGAAAACCTTAGCTTGCAATTCTGATATTACAAATGATACTCAATTCTCTTTCAAGAATTATAAAAATATAAAAAAGTTCAAGTGATCTCTTGTACAAAATGGTGACTGTAGTTAATAACAACGTATTGTACTCCTGAAAATTGCCGAGAGTAAATTTGAAGTATTCTCACTACAAAAAAATGATATGTGAGGTAATAATACATGTTATTTGGCTCAATTTAGCAAAAAAA	-			P-0038336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	44	389	0	ENST00000253339.5:c.497-288_1216del		p.X166_splice	ENST00000253339		166																																																																															
XRCC2	7516	MSKCC	GRCh37	7	152346281	152346281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	51	558	0	ENST00000359321.1:c.289G>A	p.Glu97Lys	p.E97K	ENST00000359321	NM_005431.1	97	Gag/Aag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436833	52436840	+	frameshift_variant	Frame_Shift_Del	DEL	ACGCCTCA	ACGCCTCA	G			P-0038336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	62	650	0	ENST00000460680.1:c.1938_1945delinsC	p.Glu647AlafsTer6	p.E647Afs*6	ENST00000460680	NM_004656.3	646	taTGAGGCGTgc/taCgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	199	367	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0038338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	65	483	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591896	48591896	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	55	447	0	ENST00000342988.3:c.1059C>A	p.Tyr353Ter	p.Y353*	ENST00000342988	NM_005359.5	353	taC/taA																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528069	103528069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	86	412	0	ENST00000355739.4:c.3377C>A	p.Ala1126Asp	p.A1126D	ENST00000355739	NM_000123.3	1126	gCt/gAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929083	32929083	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AG			P-0038338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	36	520	0	ENST00000380152.3:c.7093delinsAG	p.His2365ArgfsTer27	p.H2365Rfs*27	ENST00000380152		2365	Cat/AGat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0024735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			810	122	742	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDH1	999	MSKCC	GRCh37	16	68842633	68842633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	52	676	0	ENST00000261769.5:c.569A>G	p.Tyr190Cys	p.Y190C	ENST00000261769	NM_004360.3	190	tAc/tGc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286746	212286746	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	23	294	0	ENST00000342788.4:c.2950T>C	p.Tyr984His	p.Y984H	ENST00000342788	NM_005235.2	984	Tac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037761-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	46	542	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037761-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	22	377	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112173572	112173572	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037761-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			276	20	273	0	ENST00000257430.4:c.2281G>T	p.Glu761Ter	p.E761*	ENST00000257430	NM_000038.5	761	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0037761-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			803	74	569	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986533	36986534	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGAG			P-0037761-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			812	66	623	0	ENST00000354822.5:c.1152_1155dup	p.Asp386LeufsTer54	p.D386Lfs*54	ENST00000354822	NM_001079668.2	385	-/CTCG																																																																														
RB1	5925	MSKCC	GRCh37	13	48941696	48941696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	18	125	0	ENST00000267163.4:c.1010del	p.Leu337TrpfsTer12	p.L337Wfs*12	ENST00000267163	NM_000321.2	336	Ttt/tt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257210	16257210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	20	300	0	ENST00000375759.3:c.4475C>G	p.Ser1492Cys	p.S1492C	ENST00000375759	NM_015001.2	1492	tCc/tGc																																																																														
CIC	23152	MSKCC	GRCh37	19	42797278	42797278	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	66	498	0	ENST00000575354.2:c.3640C>T	p.Arg1214Ter	p.R1214*	ENST00000575354	NM_015125.3	1214	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874012	151874013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	39	248	0	ENST00000262189.6:c.8525dup	p.Asn2842LysfsTer2	p.N2842Kfs*2	ENST00000262189	NM_170606.2	2842	aat/aaAt																																																																														
TET1	80312	MSKCC	GRCh37	10	70451459	70451459	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	85	333	0	ENST00000373644.4:c.6299A>T	p.Glu2100Val	p.E2100V	ENST00000373644	NM_030625.2	2100	gAa/gTa																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871112	12871112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	35	180	0	ENST00000228872.4:c.341del	p.Pro114ArgfsTer5	p.P114Rfs*5	ENST00000228872	NM_004064.3	113	cgC/cg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845361	151845361	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	77	361	0	ENST00000262189.6:c.13651G>C	p.Gly4551Arg	p.G4551R	ENST00000262189	NM_170606.2	4551	Ggt/Cgt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	32	244	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	260	396	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308382	15308383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	213	450	0	ENST00000263388.2:c.125dup	p.Cys43LeufsTer32	p.C43Lfs*32	ENST00000263388	NM_000435.2	42	cct/ccCt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532555	63532555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	311	466	0	ENST00000307078.5:c.2024G>A	p.Arg675His	p.R675H	ENST00000307078	NM_004655.3	675	cGt/cAt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467855	99467856	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	144	199	0	ENST00000268035.6:c.2732_2733dupCT	p.Gly912LeufsTer26	p.G912Lfs*26	ENST00000268035	NM_000875.3	908	-/TC																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	164	270	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870921	12870922	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	131	189	0	ENST00000228872.4:c.151_152del	p.Asp51HisfsTer73	p.D51Hfs*73	ENST00000228872	NM_004064.3	50	AGa/a																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78820340	78820340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	300	473	0	ENST00000306801.3:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000306801	NM_020761.2	427	cGa/cAa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433482	138433482	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	150	285	0	ENST00000289153.2:c.1130del	p.Asn377MetfsTer35	p.N377Mfs*35	ENST00000289153	NM_006219.2	377	aAt/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107136	27107137	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	436	319	0	ENST00000324856.7:c.6749_6750del	p.Glu2250ValfsTer27	p.E2250Vfs*27	ENST00000324856	NM_006015.4	2249	tcAGag/tcag																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439770	51439772	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	354	219	0	ENST00000262662.1:c.338_340del	p.Glu113del	p.E113del	ENST00000262662		112	aAAGaa/aaa																																																																														
PARP1	142	MSKCC	GRCh37	1	226570833	226570833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	199	275	0	ENST00000366794.5:c.1063C>T	p.Arg355Cys	p.R355C	ENST00000366794	NM_001618.3	355	Cgt/Tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	48878068	48878069	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	148	175	0	ENST00000267163.4:c.25dup	p.Thr9AsnfsTer22	p.T9Nfs*22	ENST00000267163	NM_000321.2	7	cga/cgAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434588	49434589	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	285	472	0	ENST00000301067.7:c.6964_6965del	p.Lys2322AspfsTer3	p.K2322Dfs*3	ENST00000301067	NM_003482.3	2322	AAg/g																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68353842	68353842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	137	235	0	ENST00000487270.1:c.677G>A	p.Gly226Asp	p.G226D	ENST00000487270	NM_133509.3	226	gGc/gAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570149	95570150	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	120	210	0	ENST00000343455.3:c.3583_3584del	p.Asp1195LeufsTer39	p.D1195Lfs*39	ENST00000343455	NM_177438.2	1195	GAc/c																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655477	67655477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	141	283	0	ENST00000264010.4:c.1340C>T	p.Ala447Val	p.A447V	ENST00000264010	NM_006565.3	447	gCc/gTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29585422	29585422	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	54	291	0	ENST00000358273.4:c.4234A>G	p.Arg1412Gly	p.R1412G	ENST00000358273	NM_001042492.2	1412	Aga/Gga																																																																														
EZH1	2145	MSKCC	GRCh37	17	40879755	40879755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	207	316	0	ENST00000428826.2:c.144G>T	p.Lys48Asn	p.K48N	ENST00000428826		48	aaG/aaT																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371844	45371844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	138	194	0	ENST00000262160.6:c.1147A>G	p.Lys383Glu	p.K383E	ENST00000262160	NM_005901.5	383	Aag/Gag																																																																														
STK11	6794	MSKCC	GRCh37	19	1226611	1226611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	183	331	0	ENST00000326873.7:c.1267A>G	p.Lys423Glu	p.K423E	ENST00000326873	NM_000455.4	423	Aag/Gag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276648	15276648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	61	476	0	ENST00000263388.2:c.5617C>A	p.Arg1873Ser	p.R1873S	ENST00000263388	NM_000435.2	1873	Cgc/Agc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30733051	30733053	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	177	262	0	ENST00000359013.4:c.1742_1744del	p.Lys581del	p.K581del	ENST00000359013	NM_001024847.2	580	gAGAag/gag																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99812440	99812440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	45	266	0	ENST00000280892.6:c.229C>T	p.Gln77Ter	p.Q77*	ENST00000280892	NM_001130678.1	77	Caa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681031	117681031	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	161	254	0	ENST00000368508.3:c.3589T>C	p.Tyr1197His	p.Y1197H	ENST00000368508	NM_002944.2	1197	Tat/Cat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911423	39911424	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	230	355	0	ENST00000378444.4:c.5206_5207del	p.Leu1736AlafsTer12	p.L1736Afs*12	ENST00000378444	NM_001123385.1	1736	CTg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	23	518	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242494	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAACATCTCCGAAAGC	TTAAGAGAAGCAACATCTCCGAAAGC	GCCAA			P-0038282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	16	343	1	ENST00000275493.2:c.2239_2264delinsGCCAA	p.Leu747_Ala755delinsAlaAsn	p.L747_A755delinsAN	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCTCCGAAAGCc/GCCAAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084144	47084144	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	48	279	0	ENST00000409792.3:c.7145C>G	p.Ser2382Cys	p.S2382C	ENST00000409792	NM_014159.6	2382	tCt/tGt																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799737	72799737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	34	355	0	ENST00000325599.8:c.1432G>C	p.Asp478His	p.D478H	ENST00000325599	NM_018130.2	478	Gat/Cat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221820	55221822	+	missense_variant	Missense_Mutation	ONP	TGC	TGC	GTA			P-0038283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	144	482	1	ENST00000275493.2:c.864_866delinsGTA	p.Ala289Tyr	p.A289Y	ENST00000275493	NM_005228.3	288	ggTGCc/ggGTAc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98224209	98224209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	53	224	0	ENST00000331920.6:c.2632G>T	p.Asp878Tyr	p.D878Y	ENST00000331920	NM_000264.3	878	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	85	1107	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125094	46125095	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	32	201	0	ENST00000334344.6:c.282dup	p.Arg95AlafsTer16	p.R95Afs*16	ENST00000334344	NM_152641.2	94	ttg/ttGg																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514236	69514236	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	85	968	0	ENST00000294312.3:c.445A>G	p.Lys149Glu	p.K149E	ENST00000294312	NM_005117.2	149	Aaa/Gaa																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197196	26197196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	94	522	0	ENST00000356476.2:c.283G>A	p.Glu95Lys	p.E95K	ENST00000356476		95	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0038289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	396	805	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060939	38060940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1421	163	568	0	ENST00000250448.2:c.1049dup	p.Thr351AspfsTer64	p.T351Dfs*64	ENST00000250448	NM_004496.3	350	aag/aaAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7573977	7574014	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTTCCAAGGCCTCATTCAGCTCTCGGAACATCTCGA	GAGTTCCAAGGCCTCATTCAGCTCTCGGAACATCTCGA	CAGT			P-0038289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	308	929	2	ENST00000269305.4:c.1013_1050delinsACTG	p.Phe338TyrfsTer2	p.F338Yfs*2	ENST00000269305	NM_001126112.2	338	tTCGAGATGTTCCGAGAGCTGAATGAGGCCTTGGAACTC/tACTG																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166298	32166298	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	101	880	3	ENST00000375023.3:c.4656G>A	p.Trp1552Ter	p.W1552*	ENST00000375023	NM_004557.3	1552	tgG/tgA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005944	69005944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	35	545	0	ENST00000288368.4:c.2355C>A	p.Asp785Glu	p.D785E	ENST00000288368	NM_024870.2	785	gaC/gaA																																																																														
BTK	695	MSKCC	GRCh37	X	100630203	100630203	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	95	251	0	ENST00000308731.7:c.70A>C	p.Asn24His	p.N24H	ENST00000308731	NM_000061.2	24	Aac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	16	455	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	22	452	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0038290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	32	226	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
AR	367	MSKCC	GRCh37	X	66765403	66765403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	62	432	2	ENST00000374690.3:c.415G>A	p.Val139Met	p.V139M	ENST00000374690	NM_000044.3	139	Gtg/Atg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86668007	86668007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	27	267	0	ENST00000274376.6:c.1771C>T	p.Arg591Cys	p.R591C	ENST00000274376	NM_002890.2	591	Cgt/Tgt																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139818391	139818393	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0038290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	70	897	0	ENST00000247668.2:c.1230_1232delCTT	p.Phe411del	p.F411del	ENST00000247668	NM_021138.3	409	cTCTtc/ctc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393419	139393419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	260	886	3	ENST00000277541.6:c.6112G>A	p.Val2038Met	p.V2038M	ENST00000277541	NM_017617.3	2038	Gtg/Atg																																																																														
ATRX	546	MSKCC	GRCh37	X	76937487	76937487	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	112	384	0	ENST00000373344.5:c.3261T>A	p.Tyr1087Ter	p.Y1087*	ENST00000373344	NM_000489.3	1087	taT/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	45	428	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	68	875	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0038293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	196	598	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0038293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	571	864	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0038293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	193	332	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174152	112174152	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	45	360	0	ENST00000257430.4:c.2861T>A	p.Leu954Ter	p.L954*	ENST00000257430	NM_000038.5	954	tTa/tAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	431	570	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133220467	133220467	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146711942		P-0038293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	45	669	0	ENST00000320574.5:c.4246G>A	p.Ala1416Thr	p.A1416T	ENST00000320574	NM_006231.2	1416	Gct/Act																																																																														
CASP8	841	MSKCC	GRCh37	2	202139642	202139642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	85	353	0	ENST00000358485.4:c.803C>T	p.Ser268Leu	p.S268L	ENST00000358485	NM_001080125.1	268	tCg/tTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906393	50906393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	307	1016	0	ENST00000440232.2:c.1054C>T	p.Arg352Cys	p.R352C	ENST00000440232	NM_002691.3	352	Cgc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727077	40727077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	60	468	0	ENST00000373198.4:c.3887A>C	p.Glu1296Ala	p.E1296A	ENST00000373198	NM_133170.3	1296	gAg/gCg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106607	27106608	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0038294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	261	649	0	ENST00000324856.7:c.6219_6220insAA	p.Ser2074AsnfsTer62	p.S2074Nfs*62	ENST00000324856	NM_006015.4	2073	cta/ctAAa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505403	25505403	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	87	666	1	ENST00000264709.3:c.355G>T	p.Glu119Ter	p.E119*	ENST00000264709	NM_175629.2	119	Gag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213812	66213812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	46	400	0	ENST00000273854.3:c.2618C>A	p.Ser873Tyr	p.S873Y	ENST00000273854	NM_004439.5	873	tCt/tAt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670734	86670735	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0038294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	14	118	0	ENST00000274376.6:c.2011+2dup		p.X671_splice	ENST00000274376	NM_002890.2	671																																																																															
PREX2	80243	MSKCC	GRCh37	8	69012080	69012080	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0038294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	50	361	0	ENST00000288368.4:c.2715+2T>G		p.X905_splice	ENST00000288368	NM_024870.2	905																																																																															
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	342	754	2	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	160	704	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610608	52610608	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	96	410	1	ENST00000394830.3:c.3565G>T	p.Glu1189Ter	p.E1189*	ENST00000394830	NM_018313.4	1189	Gaa/Taa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154869	2154869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	168	868	0	ENST00000434045.2:c.352C>T	p.Arg118Cys	p.R118C	ENST00000434045	NM_001127598.1	118	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244436	5244436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	172	877	0	ENST00000357368.4:c.1046C>T	p.Thr349Ile	p.T349I	ENST00000357368	NM_002850.3	349	aCc/aTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172048	32172060	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCAGGCACAGT	GGGCAGGCACAGT	-			P-0038297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	148	802	0	ENST00000375023.3:c.2972_2984del	p.His991LeufsTer53	p.H991Lfs*53	ENST00000375023	NM_004557.3	991	cACTGTGCCTGCCCt/ct																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4101229	4101229	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	169	839	2	ENST00000262948.5:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000262948	NM_030662.3	193	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0038299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	11	512	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0038299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	13	489	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260150	149260150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	64	395	1	ENST00000360632.3:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000360632	NM_015472.4	248	cGa/cAa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846308	156846308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	46	771	0	ENST00000524377.1:c.1753delC	p.Leu585CysfsTer73	p.L585Cfs*73	ENST00000524377	NM_002529.3	583	cgC/cg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	158	477	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	229	679	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	55	319	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	73	360	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	197	517	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	22	630	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	26	238	0	ENST00000371953.3:c.209+1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	47	691	3	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	129	482	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	161	564	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	20	536	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	174	697	0	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	74	833	4	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	42	364	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	56	321	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	58	295	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484049	50484049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	34	569	0	ENST00000394963.4:c.899G>A	p.Arg300His	p.R300H	ENST00000394963	NM_003076.4	300	cGc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5245841	5245841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	218	838	0	ENST00000357368.4:c.934G>A	p.Val312Met	p.V312M	ENST00000357368	NM_002850.3	312	Gtg/Atg																																																																														
BTK	695	MSKCC	GRCh37	X	100609618	100609618	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	24	391	0	ENST00000308731.7:c.1631G>T	p.Arg544Met	p.R544M	ENST00000308731	NM_000061.2	544	aGg/aTg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	55	544	0	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458724	120458724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	16	489	0	ENST00000256646.2:c.6621G>A	p.Met2207Ile	p.M2207I	ENST00000256646	NM_024408.3	2207	atG/atA																																																																														
ESR1	2099	MSKCC	GRCh37	6	152163866	152163866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	100	479	0	ENST00000206249.3:c.587A>G	p.His196Arg	p.H196R	ENST00000206249	NM_000125.3	196	cAt/cGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	122	486	0	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	219	633	1	ENST00000269305.4:c.827C>T	p.Ala276Val	p.A276V	ENST00000269305	NM_001126112.2	276	gCc/gTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692832	89692832	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	14	162	0	ENST00000371953.3:c.316G>T	p.Glu106Ter	p.E106*	ENST00000371953	NM_000314.4	106	Gaa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213358	36213359	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	103	798	0	ENST00000222270.7:c.2561_2562del	p.Glu854AlafsTer34	p.E854Afs*34	ENST00000222270	NM_014727.1	852	aAG/a																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223858	36223858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	239	871	4	ENST00000222270.7:c.6413del	p.Pro2138ArgfsTer15	p.P2138Rfs*15	ENST00000222270	NM_014727.1	2136	ctC/ct																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911107	29911107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	20	381	0	ENST00000376809.5:c.406G>A	p.Gly136Arg	p.G136R	ENST00000376809	NM_002116.7	136	Ggg/Agg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910774	29910774	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs9260139		P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	51	723	0	ENST00000376809.5:c.314T>C	p.Leu105Pro	p.L105P	ENST00000376809	NM_002116.7	105	cTg/cCg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980293	201980293	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	32	591	0	ENST00000359651.3:c.33delT	p.Phe11LeufsTer32	p.F11Lfs*32	ENST00000359651		10	aTt/at																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128015264	128015264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	42	420	1	ENST00000285398.2:c.2257G>A	p.Ala753Thr	p.A753T	ENST00000285398	NM_000122.1	753	Gcc/Acc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307276	65307279	+	frameshift_variant	Frame_Shift_Del	DEL	TCTC	TCTC	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	94	313	0	ENST00000342505.4:c.2409_2412del	p.Glu803AspfsTer10	p.E803Dfs*10	ENST00000342505	NM_002227.2	803	gaGAGA/ga																																																																														
RET	5979	MSKCC	GRCh37	10	43600522	43600522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	56	597	0	ENST00000355710.3:c.748C>T	p.Arg250Cys	p.R250C	ENST00000355710	NM_020975.4	250	Cgc/Tgc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77069983	77069983	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	44	424	0	ENST00000356341.3:c.557del	p.Pro186HisfsTer4	p.P186Hfs*4	ENST00000356341	NM_002576.4	186	cCa/ca																																																																														
KDM5A	5927	MSKCC	GRCh37	12	394624	394624	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	98	376	0	ENST00000399788.2:c.5071T>C	p.Ter1691GlnextTer5	p.*1691Qext*5	ENST00000399788	NM_001042603.1	1691	Tag/Cag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118878	115118878	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	13	317	0	ENST00000257566.3:c.463A>G	p.Ile155Val	p.I155V	ENST00000257566	NM_016569.3	155	Att/Gtt																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	15	517	0	ENST00000320574.5:c.1231G>A	p.Val411Met	p.V411M	ENST00000320574	NM_006231.2	411	Gtg/Atg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3795282	3795282	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	26	354	0	ENST00000262367.5:c.3910T>C	p.Ser1304Pro	p.S1304P	ENST00000262367	NM_004380.2	1304	Tca/Cca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821210	72821210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	141	630	0	ENST00000268489.5:c.10965G>A	p.Met3655Ile	p.M3655I	ENST00000268489	NM_006885.3	3655	atG/atA																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350267	89350267	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148886777		P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	223	776	1	ENST00000301030.4:c.2683C>T	p.Arg895Trp	p.R895W	ENST00000301030	NM_001256183.1	895	Cgg/Tgg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980019	7980019	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	147	684	0	ENST00000319144.4:c.1318A>G	p.Ile440Val	p.I440V	ENST00000319144	NM_001139.2	440	Att/Gtt																																																																														
RARA	5914	MSKCC	GRCh37	17	38511608	38511608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	59	629	1	ENST00000254066.5:c.1106G>A	p.Ser369Asn	p.S369N	ENST00000254066	NM_000964.3	369	aGc/aAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118905	70118906	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTC			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	445	718	0	ENST00000245479.2:c.478_479insCTCC	p.Arg160ProfsTer93	p.R160Pfs*93	ENST00000245479	NM_000346.3	159	-/CCTC																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78727808	78727808	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	45	565	1	ENST00000306801.3:c.655-2A>G		p.X219_splice	ENST00000306801	NM_020761.2	219																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2223279	2223279	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	29	683	0	ENST00000398665.3:c.3391-1G>T		p.X1131_splice	ENST00000398665	NM_032482.2	1131																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251656	212251656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	43	406	0	ENST00000342788.4:c.3403T>C	p.Phe1135Leu	p.F1135L	ENST00000342788	NM_005235.2	1135	Ttt/Ctt																																																																														
BARD1	580	MSKCC	GRCh37	2	215593690	215593690	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	65	270	0	ENST00000260947.4:c.2044A>G	p.Thr682Ala	p.T682A	ENST00000260947	NM_000465.2	682	Acc/Gcc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660151	227660151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	38	642	0	ENST00000305123.5:c.3304G>A	p.Glu1102Lys	p.E1102K	ENST00000305123	NM_005544.2	1102	Gag/Aag																																																																														
SRC	6714	MSKCC	GRCh37	20	36030986	36030986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	37	536	0	ENST00000358208.4:c.1265G>A	p.Arg422Gln	p.R422Q	ENST00000358208		422	cGg/cAg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626479	12626479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	15	313	0	ENST00000251849.4:c.1670T>A	p.Ile557Asn	p.I557N	ENST00000251849	NM_002880.3	557	aTc/aAc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71050169	71050169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	10	266	0	ENST00000318789.4:c.1016C>T	p.Ala339Val	p.A339V	ENST00000318789	NM_032682.5	339	gCc/gTc																																																																														
ATR	545	MSKCC	GRCh37	3	142217577	142217577	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	11	358	0	ENST00000350721.4:c.5420T>C	p.Leu1807Pro	p.L1807P	ENST00000350721	NM_001184.3	1807	cTa/cCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928057	178928083	+	inframe_deletion	In_Frame_Del	DEL	TTGGCCAGTACCTCATGGATTAGAAGA	TTGGCCAGTACCTCATGGATTAGAAGA	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	18	449	0	ENST00000263967.3:c.1337_1363del	p.Trp446_Asp454del	p.W446_D454del	ENST00000263967	NM_006218.2	445	ctTTGGCCAGTACCTCATGGATTAGAAGAt/ctt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808053	1808053	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	32	814	3	ENST00000260795.2:c.2029G>A	p.Val677Ile	p.V677I	ENST00000260795		677	Gtc/Atc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056463	26056463	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	64	214	0	ENST00000343677.2:c.194C>G	p.Ala65Gly	p.A65G	ENST00000343677	NM_005319.3	65	gCg/gGg																																																																														
RAC1	5879	MSKCC	GRCh37	7	6442036	6442036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs16063		P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	20	40	0	ENST00000356142.4:c.595C>T	p.Pro199Ser	p.P199S	ENST00000356142	NM_018890.3	199	Cct/Tct																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981866	70981866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	190	737	0	ENST00000276594.2:c.230T>C	p.Leu77Ser	p.L77S	ENST00000276594	NM_024504.3	77	tTg/tCg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426421	47426421	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	36	693	0	ENST00000377045.4:c.768delG	p.Ser257AlafsTer35	p.S257Afs*35	ENST00000377045	NM_001654.4	255	cGg/cg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410115	63410115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	108	703	1	ENST00000330258.3:c.3052C>T	p.Pro1018Ser	p.P1018S	ENST00000330258	NM_152424.3	1018	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	123	638	0	ENST00000269305.4:c.526T>G	p.Cys176Gly	p.C176G	ENST00000269305	NM_001126112.2	176	Tgc/Ggc																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165741	118165741	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	132	323	0	ENST00000369448.3:c.251A>G	p.Asn84Ser	p.N84S	ENST00000369448	NM_017709.3	84	aAt/aGt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28624234	28624234	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0038306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	166	374	0	ENST00000241453.7:c.740T>C	p.Ile247Thr	p.I247T	ENST00000241453	NM_004119.2	247	aTa/aCa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243630	41243630	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	263	439	1	ENST00000357654.3:c.3918del	p.Thr1307LeufsTer11	p.T1307Lfs*11	ENST00000357654	NM_007294.3	1306	ttG/tt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291858	15291858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	293	781	0	ENST00000263388.2:c.2908C>T	p.Pro970Ser	p.P970S	ENST00000263388	NM_000435.2	970	Ccc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979249	93979249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	41	326	0	ENST00000369303.4:c.1579A>G	p.Ser527Gly	p.S527G	ENST00000369303	NM_004440.3	527	Agt/Ggt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983846	2983846	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0038306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	204	523	0	ENST00000396946.4:c.684G>C	p.Glu228Asp	p.E228D	ENST00000396946	NM_032415.4	228	gaG/gaC																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205145	123205156	+	inframe_deletion	In_Frame_Del	DEL	TGAACAGGATGA	TGAACAGGATGA	-			P-0038306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	24	310	0	ENST00000218089.9:c.2508_2519del	p.Glu836_Asp839del	p.E836_D839del	ENST00000218089	NM_001042749.1	835	atTGAACAGGATGAt/att																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858476	57858476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199685332		P-0038312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	121	538	1	ENST00000228682.2:c.214C>T	p.Arg72Trp	p.R72W	ENST00000228682	NM_005269.2	72	Cgg/Tgg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	98	467	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967146	25967146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	79	363	0	ENST00000435504.4:c.2060G>A	p.Gly687Glu	p.G687E	ENST00000435504		687	gGa/gAa																																																																														
ATM	472	MSKCC	GRCh37	11	108199873	108199873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	43	166	0	ENST00000278616.4:c.7215G>A	p.Met2405Ile	p.M2405I	ENST00000278616	NM_000051.3	2405	atG/atA																																																																														
APC	324	MSKCC	GRCh37	5	112178747	112178747	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	106	370	0	ENST00000257430.4:c.7457del	p.Pro2486LeufsTer30	p.P2486Lfs*30	ENST00000257430	NM_000038.5	2486	Cct/ct																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672594	30672596	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0038312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	118	597	0	ENST00000376406.3:c.4364_4366del	p.Leu1455del	p.L1455del	ENST00000376406	NM_014641.2	1455	cTCCag/cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	96	114	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	146	127	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0038321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	261	714	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	218	571	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	114	345	0	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879549	151879549	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	117	350	1	ENST00000262189.6:c.5396C>A	p.Ser1799Ter	p.S1799*	ENST00000262189	NM_170606.2	1799	tCa/tAa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487884	56487884	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0038321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	188	523	0	ENST00000267101.3:c.1615G>C	p.Glu539Gln	p.E539Q	ENST00000267101	NM_001982.3	539	Gag/Cag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71019925	71019926	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	74	202	0	ENST00000318789.4:c.1683dup	p.Ser562GlnfsTer18	p.S562Qfs*18	ENST00000318789	NM_032682.5	561	-/C																																																																														
GATA2	2624	MSKCC	GRCh37	3	128199904	128199904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	365	497	0	ENST00000341105.2:c.1401C>A	p.Phe467Leu	p.F467L	ENST00000341105	NM_032638.4	467	ttC/ttA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	154	411	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794062	42794062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	147	681	1	ENST00000575354.2:c.1423G>A	p.Glu475Lys	p.E475K	ENST00000575354	NM_015125.3	475	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68844191	68844191	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035808-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			982	144	743	1	ENST00000261769.5:c.779C>G	p.Pro260Arg	p.P260R	ENST00000261769	NM_004360.3	260	cCc/cGc																																																																														
ERG	2078	MSKCC	GRCh37	21	39764356	39764356	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0035808-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			906	55	517	0	ENST00000288319.7:c.756T>G	p.Tyr252Ter	p.Y252*	ENST00000288319	NM_182918.3	252	taT/taG																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	76	422	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577140	7577140	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	369	641	0	ENST00000269305.4:c.798del	p.Arg267GlyfsTer78	p.R267Gfs*78	ENST00000269305	NM_001126112.2	266	ggA/gg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383608	42383608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	154	441	2	ENST00000221972.3:c.383C>T	p.Pro128Leu	p.P128L	ENST00000221972	NM_021601.3	128	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0038339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	233	370	0	ENST00000256078.4:c.36_38dup	p.Gly13dup	p.G13dup	ENST00000256078	NM_033360.2	13	ggc/ggTGGc																																																																														
SMO	6608	MSKCC	GRCh37	7	128845511	128845511	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111694017		P-0038340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	41	736	0	ENST00000249373.3:c.808G>A	p.Val270Ile	p.V270I	ENST00000249373	NM_005631.4	270	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0038340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	91	614	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
ATR	545	MSKCC	GRCh37	3	142176504	142176504	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	37	372	1	ENST00000350721.4:c.7597C>T	p.Arg2533Ter	p.R2533*	ENST00000350721	NM_001184.3	2533	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300134	15300204	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGGACAGGTGCAAATGGCCCGGCCGTTCACCGGATTTGTGTCACAGATAGCATCCTCGTGGCAGGGGTT	GGAGGACAGGTGCAAATGGCCCGGCCGTTCACCGGATTTGTGTCACAGATAGCATCCTCGTGGCAGGGGTT	-			P-0038340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	39	737	0	ENST00000263388.2:c.1072_1142del	p.Asn358ArgfsTer8	p.N358Rfs*8	ENST00000263388	NM_000435.2	358	AACCCCTGCCACGAGGATGCTATCTGTGACACAAATCCGGTGAACGGCCGGGCCATTTGCACCTGTCCTCCc/c																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0038341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	358	426	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
KIT	3815	MSKCC	GRCh37	4	55595518	55595520	+	missense_variant	Missense_Mutation	ONP	ACA	ACA	TTT			P-0038341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	289	320	0	ENST00000288135.5:c.2008_2010delinsTTT	p.Thr670Phe	p.T670F	ENST00000288135	NM_000222.2	670	ACA/TTT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	54	457	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ATR	545	MSKCC	GRCh37	3	142215224	142215224	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	70	386	0	ENST00000350721.4:c.5877G>T	p.Arg1959Ser	p.R1959S	ENST00000350721	NM_001184.3	1959	agG/agT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	51	109	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	457	940	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	56	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589584	67589589	+	inframe_deletion	In_Frame_Del	DEL	ACATGA	ACATGA	-			P-0038347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	34	275	0	ENST00000274335.5:c.1348_1353del	p.His450_Glu451del	p.H450_E451del	ENST00000274335		449	ttACATGAa/tta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0038347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	230	855	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
DICER1	23405	MSKCC	GRCh37	14	95598956	95598956	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	88	416	0	ENST00000343455.3:c.203C>A	p.Ser68Ter	p.S68*	ENST00000343455	NM_177438.2	68	tCa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112173728	112173728	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	135	354	0	ENST00000257430.4:c.2438del	p.Asn813IlefsTer7	p.N813Ifs*7	ENST00000257430	NM_000038.5	813	Aat/at																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411492	63411493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	226	449	0	ENST00000330258.3:c.1674dup	p.Glu559ArgfsTer21	p.E559Rfs*21	ENST00000330258	NM_152424.3	558	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	160	799	1	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521543	8521543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	101	503	0	ENST00000356435.5:c.695G>A	p.Arg232His	p.R232H	ENST00000356435		232	cGc/cAc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455090	50455090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	87	423	1	ENST00000331340.3:c.637C>T	p.Arg213Ter	p.R213*	ENST00000331340	NM_006060.4	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	56	411	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	25	531	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0038351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	21	739	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	29	518	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434665	110434665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	25	475	0	ENST00000375856.3:c.3736G>A	p.Gly1246Ser	p.G1246S	ENST00000375856	NM_003749.2	1246	Ggc/Agc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	103	94	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	253	578	1	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992136	11992136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	78	317	0	ENST00000396373.4:c.226G>A	p.Glu76Lys	p.E76K	ENST00000396373	NM_001987.4	76	Gag/Aag																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164509	36164509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	117	198	1	ENST00000300305.3:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000300305		456	Gag/Aag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239915	53239915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	118	278	0	ENST00000375401.3:c.1526C>T	p.Ser509Leu	p.S509L	ENST00000375401	NM_004187.3	509	tCa/tTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500838	8500838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	130	401	0	ENST00000356435.5:c.2044G>A	p.Glu682Lys	p.E682K	ENST00000356435		682	Gaa/Aaa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45856356	45856356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	118	626	0	ENST00000391945.4:c.1816G>C	p.Glu606Gln	p.E606Q	ENST00000391945	NM_000400.3	606	Gag/Cag																																																																														
NF1	4763	MSKCC	GRCh37	17	29556049	29556049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	35	217	0	ENST00000358273.4:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000358273	NM_001042492.2	806	Gaa/Aaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29701088	29701088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	77	371	0	ENST00000358273.4:c.8435G>A	p.Arg2812Gln	p.R2812Q	ENST00000358273	NM_001042492.2	2812	cGa/cAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245288	46245288	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	146	424	0	ENST00000334344.6:c.3382C>T	p.Gln1128Ter	p.Q1128*	ENST00000334344	NM_152641.2	1128	Cag/Tag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115889	8115889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	130	556	0	ENST00000346208.3:c.1235C>T	p.Ser412Phe	p.S412F	ENST00000346208		412	tCc/tTc																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983095	149983095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	21	441	0	ENST00000253339.5:c.3163G>C	p.Glu1055Gln	p.E1055Q	ENST00000253339		1055	Gaa/Caa																																																																														
ABL1	25	MSKCC	GRCh37	9	133738189	133738189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150134901		P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	69	441	1	ENST00000318560.5:c.589G>A	p.Glu197Lys	p.E197K	ENST00000318560	NM_005157.4	197	Gag/Aag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2223469	2223469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	52	286	0	ENST00000398665.3:c.3580G>A	p.Glu1194Lys	p.E1194K	ENST00000398665	NM_032482.2	1194	Gag/Aag																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287395	33287395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	58	448	0	ENST00000374542.5:c.1702G>A	p.Glu568Lys	p.E568K	ENST00000374542	NM_001141970.1	568	Gag/Aag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98268865	98268865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	106	194	0	ENST00000331920.6:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000331920	NM_000264.3	73	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106498	27106498	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	212	639	0	ENST00000324856.7:c.6109C>T	p.Gln2037Ter	p.Q2037*	ENST00000324856	NM_006015.4	2037	Cag/Tag																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073515	8073515	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	63	342	0	ENST00000377482.5:c.1144A>G	p.Ile382Val	p.I382V	ENST00000377482	NM_018948.3	382	Att/Gtt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63662161	63662161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	93	306	0	ENST00000279873.7:c.265G>A	p.Asp89Asn	p.D89N	ENST00000279873	NM_032199.2	89	Gac/Aac																																																																														
HRAS	3265	MSKCC	GRCh37	11	532660	532660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	114	629	1	ENST00000311189.7:c.546G>A	p.Met182Ile	p.M182I	ENST00000311189		182	atG/atA																																																																														
WT1	7490	MSKCC	GRCh37	11	32450042	32450042	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	90	450	0	ENST00000332351.3:c.769+1G>T		p.X257_splice	ENST00000332351	NM_024426.4	257																																																																															
ARID2	196528	MSKCC	GRCh37	12	46211525	46211525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	59	251	0	ENST00000334344.6:c.491C>T	p.Ser164Leu	p.S164L	ENST00000334344	NM_152641.2	164	tCa/tTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448526	49448526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371342351		P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	51	432	0	ENST00000301067.7:c.185C>T	p.Pro62Leu	p.P62L	ENST00000301067	NM_003482.3	62	cCg/cTg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606025	81606025	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	40	341	0	ENST00000298171.2:c.695A>G	p.Asp232Gly	p.D232G	ENST00000298171	NM_000369.2	232	gAc/gGc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641130	3641130	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	86	969	0	ENST00000294008.3:c.2509A>G	p.Lys837Glu	p.K837E	ENST00000294008	NM_032444.2	837	Aag/Gag																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462653	40462653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	147	469	0	ENST00000345506.4:c.2351G>T	p.Gly784Val	p.G784V	ENST00000345506	NM_003152.3	784	gGt/gTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437558	56437558	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	187	572	0	ENST00000407977.2:c.904T>G	p.Trp302Gly	p.W302G	ENST00000407977		302	Tgg/Ggg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58677778	58677778	+	start_lost	Translation_Start_Site	SNP	G	G	C			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	138	332	0	ENST00000305921.3:c.3G>C	p.Met1?	p.M1?	ENST00000305921	NM_003620.3	1	atG/atC																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367038	15367038	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	44	251	0	ENST00000263377.2:c.1588C>T	p.Gln530Ter	p.Q530*	ENST00000263377	NM_058243.2	530	Cag/Tag																																																																														
RYBP	23429	MSKCC	GRCh37	3	72428439	72428439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	176	521	0	ENST00000477973.2:c.563C>T	p.Pro189Ser	p.P189S	ENST00000477973	NM_012234.5	189	Cct/Tct																																																																														
BCL6	604	MSKCC	GRCh37	3	187443325	187443325	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	157	314	0	ENST00000232014.4:c.1801C>G	p.Pro601Ala	p.P601A	ENST00000232014	NM_001130845.1	601	Ccc/Gcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187516891	187516891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	64	438	0	ENST00000441802.2:c.13090G>A	p.Glu4364Lys	p.E4364K	ENST00000441802	NM_005245.3	4364	Gaa/Aaa																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158433	26158477	+	inframe_deletion	In_Frame_Del	DEL	GAAGGGCTCCAAGAAGGCGGTGACTAAGGCTCAGAAGAAGGACGG	GAAGGGCTCCAAGAAGGCGGTGACTAAGGCTCAGAAGAAGGACGG	-			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1275	104	751	0	ENST00000289316.2:c.40_84del	p.Gly14_Lys28del	p.G14_K28del	ENST00000289316	NM_138720.2	12	aaGAAGGGCTCCAAGAAGGCGGTGACTAAGGCTCAGAAGAAGGACGGg/aag																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839986	27839994	+	inframe_deletion	In_Frame_Del	DEL	GACGCCACC	GACGCCACC	-			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	65	257	0	ENST00000328488.2:c.100_108del	p.Gly34_Val36del	p.G34_V36del	ENST00000328488	NM_003533.2	34	GGTGGCGTC/-																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793518	89793518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	52	295	0	ENST00000336032.3:c.587A>G	p.His196Arg	p.H196R	ENST00000336032	NM_006813.2	196	cAt/cGt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001017	150001017	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	51	272	0	ENST00000253339.5:c.2587C>T	p.Gln863Ter	p.Q863*	ENST00000253339		863	Cag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508547	106508547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	30	292	0	ENST00000359195.3:c.541G>C	p.Val181Leu	p.V181L	ENST00000359195	NM_002649.2	181	Gtg/Ctg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859678	151859678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	102	331	0	ENST00000262189.6:c.10984G>A	p.Glu3662Lys	p.E3662K	ENST00000262189	NM_170606.2	3662	Gaa/Aaa																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194818	29194818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1224	94	902	0	ENST00000240100.2:c.910G>A	p.Glu304Lys	p.E304K	ENST00000240100	NM_001394.6	304	Gag/Aag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220423	98220423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	195	555	0	ENST00000331920.6:c.3040C>T	p.Pro1014Ser	p.P1014S	ENST00000331920	NM_000264.3	1014	Ccc/Tcc																																																																														
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	21	698	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0038353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	132	556	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	881	622	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	92	288	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	296	840	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	39	567	0	ENST00000377767.4:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000377767	NM_014953.3	479	Gac/Tac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	62	204	0	ENST00000371953.3:c.1027-1G>A		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
DDR2	4921	MSKCC	GRCh37	1	162745576	162745576	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	100	582	0	ENST00000367921.3:c.1991A>C	p.Gln664Pro	p.Q664P	ENST00000367921	NM_006182.2	664	cAg/cCg																																																																														
PGR	5241	MSKCC	GRCh37	11	100962505	100962505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	125	583	0	ENST00000325455.5:c.1892G>T	p.Gly631Val	p.G631V	ENST00000325455	NM_001202474.3	631	gGc/gTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190591	11190591	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	78	609	0	ENST00000361445.4:c.5608A>T	p.Thr1870Ser	p.T1870S	ENST00000361445	NM_004958.3	1870	Act/Tct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101402	27101403	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	122	525	0	ENST00000324856.7:c.4688_4689del	p.Pro1563HisfsTer8	p.P1563Hfs*8	ENST00000324856	NM_006015.4	1562	CCc/c																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106361	27106361	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	190	645	0	ENST00000324856.7:c.5972T>A	p.Leu1991Gln	p.L1991Q	ENST00000324856	NM_006015.4	1991	cTg/cAg																																																																														
TET1	80312	MSKCC	GRCh37	10	70404833	70404833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	210	498	0	ENST00000373644.4:c.2348del	p.Gly783AlafsTer12	p.G783Afs*12	ENST00000373644	NM_030625.2	783	Ggc/gc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46242702	46242702	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	40	565	0	ENST00000334344.6:c.1664A>T	p.Lys555Ile	p.K555I	ENST00000334344	NM_152641.2	555	aAa/aTa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2120494	2120494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	333	993	0	ENST00000219476.3:c.1754G>T	p.Arg585Leu	p.R585L	ENST00000219476	NM_000548.3	585	cGt/cTt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39613788	39613788	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	22	404	0	ENST00000262039.4:c.1708-2A>G		p.X570_splice	ENST00000262039	NM_002647.2	570																																																																															
CCNE1	898	MSKCC	GRCh37	19	30314604	30314604	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	236	723	0	ENST00000262643.3:c.1153A>T	p.Arg385Trp	p.R385W	ENST00000262643	NM_001238.2	385	Agg/Tgg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139835	55139835	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	117	480	0	ENST00000257290.5:c.1496T>A	p.Val499Glu	p.V499E	ENST00000257290	NM_006206.4	499	gTg/gAg																																																																														
APC	324	MSKCC	GRCh37	5	112175384	112175384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	126	340	0	ENST00000257430.4:c.4093G>T	p.Gly1365Cys	p.G1365C	ENST00000257430	NM_000038.5	1365	Ggt/Tgt																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271456	26271456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	270	493	0	ENST00000305910.3:c.157C>A	p.Arg53Ser	p.R53S	ENST00000305910	NM_003534.2	53	Cgc/Agc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275848	38275848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	261	667	0	ENST00000425967.3:c.1421T>C	p.Leu474Pro	p.L474P	ENST00000425967	NM_001174067.1	474	cTg/cCg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222259	53222283	+	frameshift_variant	Frame_Shift_Del	DEL	CATTCTGGTTCTCCTGGGTGCTGGG	CATTCTGGTTCTCCTGGGTGCTGGG	-			P-0034354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	254	529	0	ENST00000375401.3:c.4549_4573del	p.Pro1517AlafsTer19	p.P1517Afs*19	ENST00000375401	NM_004187.3	1517	CCCAGCACCCAGGAGAACCAGAATGgc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	114	578	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	39	570	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
SDHA	6389	MSKCC	GRCh37	5	226017	226017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	27	179	1	ENST00000264932.6:c.476C>T	p.Pro159Leu	p.P159L	ENST00000264932	NM_004168.2	159	cCg/cTg																																																																														
PARP1	142	MSKCC	GRCh37	1	226570793	226570793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	83	655	0	ENST00000366794.5:c.1103C>T	p.Thr368Met	p.T368M	ENST00000366794	NM_001618.3	368	aCg/aTg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090575	71090575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	35	588	1	ENST00000318789.4:c.773G>A	p.Cys258Tyr	p.C258Y	ENST00000318789	NM_032682.5	258	tGt/tAt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129157	152129157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	67	859	0	ENST00000206249.3:c.110G>C	p.Arg37Pro	p.R37P	ENST00000206249	NM_000125.3	37	cGg/cCg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0038191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	72	794	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099988	27099988	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0038191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	72	854	0	ENST00000324856.7:c.3866+1G>T		p.X1289_splice	ENST00000324856	NM_006015.4	1289																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591135	67591136	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0038191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	46	456	0	ENST00000274335.5:c.1732_1733del	p.Asp578ProfsTer23	p.D578Pfs*23	ENST00000274335		576	acGAga/acga																																																																														
CCND1	595	MSKCC	GRCh37	11	69466018	69466018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	58	771	0	ENST00000227507.2:c.856A>G	p.Thr286Ala	p.T286A	ENST00000227507	NM_053056.2	286	Aca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0038191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	54	600	0	ENST00000256078.4:c.36_38dup	p.Gly13dup	p.G13dup	ENST00000256078	NM_033360.2	13	ggc/ggTGGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023377	27023387	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGCCGCCG	CGCCGCCGCCG	-			P-0038191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	53	144	0	ENST00000324856.7:c.485_495del	p.Ala162GlyfsTer234	p.A162Gfs*234	ENST00000324856	NM_006015.4	161	gtCGCCGCCGCCGcg/gtcg																																																																														
PGR	5241	MSKCC	GRCh37	11	100933221	100933222	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	74	593	0	ENST00000325455.5:c.2168dup	p.Arg724GlufsTer11	p.R724Efs*11	ENST00000325455	NM_001202474.3	723	gag/gaAg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12627242	12627242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	74	721	0	ENST00000251849.4:c.1474G>A	p.Val492Ile	p.V492I	ENST00000251849	NM_002880.3	492	Gta/Ata																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591140	67591153	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACCAATACTTGATG	ACCAATACTTGATG	TCTT			P-0038191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	29	476	1	ENST00000274335.5:c.1733_1745+1delinsTCTT		p.X578_splice	ENST00000274335		578																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371716	55371716	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	51	643	0	ENST00000297316.4:c.406A>G	p.Lys136Glu	p.K136E	ENST00000297316	NM_022454.3	136	Aag/Gag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	68	283	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611336	28611336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201905189		P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	64	319	0	ENST00000241453.7:c.1295C>T	p.Thr432Met	p.T432M	ENST00000241453	NM_004119.2	432	aCg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	24	166	0	ENST00000278616.4:c.8432dupA	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	32	214	0	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108183190	108183191	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	26	202	0	ENST00000278616.4:c.5977dupA	p.Ser1993LysfsTer2	p.S1993Kfs*2	ENST00000278616	NM_000051.3	1991	gaa/gAaa																																																																														
PGR	5241	MSKCC	GRCh37	11	100962543	100962544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	115	362	0	ENST00000325455.5:c.1853dup	p.Asn618LysfsTer8	p.N618Kfs*8	ENST00000325455	NM_001202474.3	618	aac/aaAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156540	55156540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	138	437	1	ENST00000257290.5:c.2941C>T	p.Arg981Cys	p.R981C	ENST00000257290	NM_006206.4	981	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106036	27106037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	116	448	0	ENST00000324856.7:c.5648dup	p.Thr1884AsnfsTer17	p.T1884Nfs*17	ENST00000324856	NM_006015.4	1883	aca/aCca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106746	27106746	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	196	541	0	ENST00000324856.7:c.6358del	p.Glu2120LysfsTer15	p.E2120Kfs*15	ENST00000324856	NM_006015.4	2119	ttG/tt																																																																														
CARM1	10498	MSKCC	GRCh37	19	11018787	11018787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	265	691	0	ENST00000327064.4:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000327064	NM_199141.1	140	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211853	36211853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	276	768	1	ENST00000222270.7:c.1604G>A	p.Arg535His	p.R535H	ENST00000222270	NM_014727.1	535	cGc/cAc																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665078	138665078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	98	192	0	ENST00000330315.3:c.487G>A	p.Gly163Ser	p.G163S	ENST00000330315	NM_023067.3	163	Ggc/Agc																																																																														
ATR	545	MSKCC	GRCh37	3	142185363	142185363	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	34	213	0	ENST00000350721.4:c.6700A>T	p.Ser2234Cys	p.S2234C	ENST00000350721	NM_001184.3	2234	Agt/Tgt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430434	181430434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	254	635	1	ENST00000325404.1:c.286C>T	p.Arg96Trp	p.R96W	ENST00000325404	NM_003106.3	96	Cgg/Tgg																																																																														
AR	367	MSKCC	GRCh37	X	66905872	66905872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	11	270	0	ENST00000374690.3:c.1789G>A	p.Ala597Thr	p.A597T	ENST00000374690	NM_000044.3	597	Gcc/Acc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082901	16082901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	43	189	0	ENST00000281043.3:c.715C>A	p.Pro239Thr	p.P239T	ENST00000281043	NM_005378.4	239	Cca/Aca																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981492	70981492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	54	841	1	ENST00000276594.2:c.604C>A	p.Leu202Met	p.L202M	ENST00000276594	NM_024504.3	202	Ctg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	203	647	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0038224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	57	258	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	10	555	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49940222	49940222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	58	738	2	ENST00000296474.3:c.821G>A	p.Ser274Asn	p.S274N	ENST00000296474	NM_002447.2	274	aGt/aAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0038225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	617	523	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0038225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	52	659	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
RB1	5925	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	254	339	0	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70348978	70348978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	175	541	1	ENST00000374080.3:c.3490G>T	p.Asp1164Tyr	p.D1164Y	ENST00000374080		1164	Gac/Tac																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50481248	50481248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	44	380	0	ENST00000394963.4:c.634G>C	p.Glu212Gln	p.E212Q	ENST00000394963	NM_003076.4	212	Gaa/Caa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029327	14029327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	111	286	0	ENST00000311895.7:c.1538G>A	p.Gly513Glu	p.G513E	ENST00000311895	NM_005236.2	513	gGa/gAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627298	37627298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	209	387	0	ENST00000447079.4:c.1213G>A	p.Glu405Lys	p.E405K	ENST00000447079	NM_015083.1	405	Gaa/Aaa																																																																														
CASP8	841	MSKCC	GRCh37	2	202137409	202137409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	106	292	0	ENST00000358485.4:c.637G>A	p.Glu213Lys	p.E213K	ENST00000358485	NM_001080125.1	213	Gaa/Aaa																																																																														
SRC	6714	MSKCC	GRCh37	20	36014517	36014517	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	236	498	0	ENST00000358208.4:c.290C>G	p.Ser97Cys	p.S97C	ENST00000358208		97	tCt/tGt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873000	134873000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	27	418	0	ENST00000398015.3:c.1304C>T	p.Ser435Phe	p.S435F	ENST00000398015	NM_004441.4	435	tCc/tTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509199	106509199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	149	566	0	ENST00000359195.3:c.1193G>T	p.Arg398Ile	p.R398I	ENST00000359195	NM_002649.2	398	aGa/aTa																																																																														
MED12	9968	MSKCC	GRCh37	X	70339953	70339953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	20	422	0	ENST00000374080.3:c.486G>A	p.Met162Ile	p.M162I	ENST00000374080		162	atG/atA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	41	314	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	82	637	1	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
CDH1	999	MSKCC	GRCh37	16	68847198	68847218	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATCTCTTTGCTCTGCAGTAC	CATCTCTTTGCTCTGCAGTAC	-			P-0038255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	71	376	0	ENST00000261769.5:c.1138-18_1140del		p.X380_splice	ENST00000261769	NM_004360.3	380																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	106	430	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	91	423	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0038261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	66	387	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133241042	133241042	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	41	437	0	ENST00000320574.5:c.2475del	p.Trp826GlyfsTer24	p.W826Gfs*24	ENST00000320574	NM_006231.2	825	cgC/cg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185870	32185870	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	34	552	0	ENST00000375023.3:c.1526T>C	p.Leu509Pro	p.L509P	ENST00000375023	NM_004557.3	509	cTc/cCc																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006099	22006099	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	69	413	0	ENST00000276925.6:c.304del	p.Ala102ProfsTer63	p.A102Pfs*63	ENST00000276925	NM_004936.3	102	Gcc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	306	842	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402690	139402690	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	277	794	0	ENST00000277541.6:c.3319C>T	p.Arg1107Ter	p.R1107*	ENST00000277541	NM_017617.3	1107	Cga/Tga																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910617	29910617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	140	820	0	ENST00000376809.5:c.157G>A	p.Asp53Asn	p.D53N	ENST00000376809	NM_002116.7	53	Gac/Aac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549788	187549788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	72	455	0	ENST00000441802.2:c.4453G>A	p.Glu1485Lys	p.E1485K	ENST00000441802	NM_005245.3	1485	Gag/Aag																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400794	72400794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	61	375	0	ENST00000357731.5:c.377C>T	p.Pro126Leu	p.P126L	ENST00000357731	NM_173808.2	126	cCc/cTc																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30253843	30253843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	201	673	0	ENST00000307677.4:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000307677	NM_138578.1	204	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518865	187518865	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	287	571	0	ENST00000441802.2:c.12339T>G	p.Cys4113Trp	p.C4113W	ENST00000441802	NM_005245.3	4113	tgT/tgG																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205641	38205641	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2607	145	736	1	ENST00000317025.8:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000317025	NM_023034.1	17	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0038266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	445	406	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579494	7579494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	666	756	2	ENST00000269305.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000269305	NM_001126112.2	65	Aga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	48878151	48878151	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	59	118	1	ENST00000267163.4:c.103C>T	p.Gln35Ter	p.Q35*	ENST00000267163	NM_000321.2	35	Cag/Tag																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27777925	27777925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	154	372	0	ENST00000369163.2:c.74C>T	p.Ala25Val	p.A25V	ENST00000369163	NM_003536.2	25	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	130	532	2	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	30	427	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539513	187539513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	29	379	0	ENST00000441802.2:c.8227C>T	p.Pro2743Ser	p.P2743S	ENST00000441802	NM_005245.3	2743	Cca/Tca																																																																														
STK11	6794	MSKCC	GRCh37	19	1220506	1220506	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	75	635	0	ENST00000326873.7:c.597+2T>A		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																															
DNMT1	1786	MSKCC	GRCh37	19	10249229	10249229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	80	593	0	ENST00000340748.4:c.3953C>T	p.Ala1318Val	p.A1318V	ENST00000340748		1318	gCg/gTg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739391	46739391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	60	445	0	ENST00000371975.4:c.1582C>G	p.Leu528Val	p.L528V	ENST00000371975	NM_003579.3	528	Ctc/Gtc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610369	10610369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	118	689	1	ENST00000171111.5:c.341G>T	p.Gly114Val	p.G114V	ENST00000171111	NM_203500.1	114	gGg/gTg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45871956	45871956	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	60	620	0	ENST00000391945.4:c.292G>T	p.Glu98Ter	p.E98*	ENST00000391945	NM_000400.3	98	Gag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	30142950	30142950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	90	695	0	ENST00000389048.3:c.576G>T	p.Glu192Asp	p.E192D	ENST00000389048	NM_004304.4	192	gaG/gaT																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561250	9561250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	70	471	0	ENST00000353224.5:c.532G>T	p.Gly178Trp	p.G178W	ENST00000353224	NM_177990.2	178	Ggg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41533686	41533686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	65	522	0	ENST00000263253.7:c.1652C>G	p.Pro551Arg	p.P551R	ENST00000263253	NM_001429.3	551	cCc/cGc																																																																														
ATR	545	MSKCC	GRCh37	3	142272756	142272756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	56	513	0	ENST00000350721.4:c.2443G>T	p.Asp815Tyr	p.D815Y	ENST00000350721	NM_001184.3	815	Gat/Tat																																																																														
ATRX	546	MSKCC	GRCh37	X	76939030	76939030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	53	550	0	ENST00000373344.5:c.1718G>T	p.Gly573Val	p.G573V	ENST00000373344	NM_000489.3	573	gGt/gTt																																																																														
RB1	5925	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	357	217	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	684	467	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354330	354330	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	389	672	0	ENST00000262320.3:c.1228G>T	p.Glu410Ter	p.E410*	ENST00000262320	NM_003502.3	410	Gag/Tag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659851	227659851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	152	489	0	ENST00000305123.5:c.3604C>T	p.Pro1202Ser	p.P1202S	ENST00000305123	NM_005544.2	1202	Ccc/Tcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843495	3843495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	227	546	0	ENST00000262367.5:c.1108C>G	p.Arg370Gly	p.R370G	ENST00000262367	NM_004380.2	370	Cga/Gga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462884	120462884	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	197	357	0	ENST00000256646.2:c.5447T>C	p.Val1816Ala	p.V1816A	ENST00000256646	NM_024408.3	1816	gTg/gCg																																																																														
POLE	5426	MSKCC	GRCh37	12	133253191	133253191	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	191	554	0	ENST00000320574.5:c.850A>C	p.Lys284Gln	p.K284Q	ENST00000320574	NM_006231.2	284	Aag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577137	7577152	+	frameshift_variant	Frame_Shift_Del	DEL	CCGTCCCAGTAGATTA	CCGTCCCAGTAGATTA	-			P-0038270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	352	561	0	ENST00000269305.4:c.786_801del	p.Asn263ThrfsTer77	p.N263Tfs*77	ENST00000269305	NM_001126112.2	262	ggTAATCTACTGGGACGG/gg																																																																														
ALK	238	MSKCC	GRCh37	2	29474104	29474104	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	361	542	1	ENST00000389048.3:c.2071A>T	p.Ser691Cys	p.S691C	ENST00000389048	NM_004304.4	691	Agc/Tgc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225343015	225343015	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	334	482	0	ENST00000264414.4:c.2077C>T	p.Gln693Ter	p.Q693*	ENST00000264414	NM_003590.4	693	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391088	89391088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	417	601	0	ENST00000336596.2:c.1154G>T	p.Arg385Leu	p.R385L	ENST00000336596	NM_005233.5	385	cGa/cTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176684102	176684103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGTATAACCTGTCATG			P-0038270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	144	462	0	ENST00000439151.2:c.4920_4936dup	p.Ala1646ValfsTer2	p.A1646Vfs*2	ENST00000439151	NM_022455.4	1639	atc/atCTGTATAACCTGTCATGc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176684128	176684129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGCCAATGTTATCCAGCTGAGG			P-0038270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	91	418	0	ENST00000439151.2:c.4953_4954insATCCAGCTGAGGCAGCCAATGTT	p.Ser1652IlefsTer15	p.S1652Ifs*15	ENST00000439151	NM_022455.4	1648	cca/cCAGCCAATGTTATCCAGCTGAGGca																																																																														
AKT2	208	MSKCC	GRCh37	19	40761115	40761116	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCAGGCAGCGTATGACAAAGGTGTTGGCG			P-0011429-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	259	913	0	ENST00000392038.2:c.236_237insCGCCAACACCTTTGTCATACGCTGCCTGCA	p.Leu78_Gln79insHisAlaAsnThrPheValIleArgCysLeu	p.L78_Q79insHANTFVIRCL	ENST00000392038	NM_001626.4	79	cag/caCGCCAACACCTTTGTCATACGCTGCCTGCAg																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792784	33792785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011429-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	86	132	0	ENST00000498907.2:c.536dup	p.Tyr181LeufsTer140	p.Y181Lfs*140	ENST00000498907	NM_004364.3	179	ttc/ttTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	123	310	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	446	745	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149238613	149238613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	344	477	0	ENST00000360632.3:c.1182G>T	p.Glu394Asp	p.E394D	ENST00000360632	NM_015472.4	394	gaG/gaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027415-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	12	385	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BARD1	580	MSKCC	GRCh37	2	215645996	215645996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034813-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			543	359	563	0	ENST00000260947.4:c.602G>T	p.Arg201Ile	p.R201I	ENST00000260947	NM_000465.2	201	aGa/aTa																																																																														
RB1	5925	MSKCC	GRCh37	13	48937059	48937059	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034813-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			142	221	431	0	ENST00000267163.4:c.828del	p.Leu277SerfsTer9	p.L277Sfs*9	ENST00000267163	NM_000321.2	276	gTt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	456	472	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	49033844	49033844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			72	319	295	0	ENST00000267163.4:c.1981C>T	p.Arg661Trp	p.R661W	ENST00000267163	NM_000321.2	661	Cgg/Tgg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201684	67201684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			98	456	499	0	ENST00000312629.5:c.985C>T	p.Arg329Trp	p.R329W	ENST00000312629	NM_003952.2	329	Cgg/Tgg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	276	664	1	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942052	71942053	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	502	599	1	ENST00000298229.2:c.1322dup	p.Asn441LysfsTer25	p.N441Kfs*25	ENST00000298229	NM_001567.3	439	cca/ccAa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115275311	115275311	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	500	507	0	ENST00000438362.2:c.1102A>G	p.Thr368Ala	p.T368A	ENST00000438362	NM_001242891.1	368	Aca/Gca																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577567	64577568	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0035025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			70	293	308	0	ENST00000337652.1:c.14_15del	p.Ala5GlyfsTer111	p.A5Gfs*111	ENST00000337652	NM_130803.2	5	gCC/g																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992792	72992792	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			121	438	509	0	ENST00000268489.5:c.1253del	p.Val418AlafsTer39	p.V418Afs*39	ENST00000268489	NM_006885.3	418	gTc/gc																																																																														
ATRX	546	MSKCC	GRCh37	X	76912114	76912117	+	frameshift_variant	Frame_Shift_Del	DEL	AATC	AATC	-			P-0035025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			63	252	365	0	ENST00000373344.5:c.4147_4150del	p.Asp1383PhefsTer106	p.D1383Ffs*106	ENST00000373344	NM_000489.3	1383	GATTtt/tt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272264	15272264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	369	506	0	ENST00000263388.2:c.6175G>A	p.Gly2059Arg	p.G2059R	ENST00000263388	NM_000435.2	2059	Ggg/Agg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673728	30673728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	77	451	0	ENST00000376406.3:c.3232G>A	p.Val1078Ile	p.V1078I	ENST00000376406	NM_014641.2	1078	Gtt/Att																																																																														
PARK2	5071	MSKCC	GRCh37	6	161970020	161970020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035025-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	185	507	0	ENST00000366898.1:c.949C>A	p.Gln317Lys	p.Q317K	ENST00000366898	NM_004562.2	317	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037795-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			169	451	630	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0037795-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			147	60	277	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0037795-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			244	102	299	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471048	8471048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037795-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			354	78	354	0	ENST00000356435.5:c.3451C>T	p.Arg1151Cys	p.R1151C	ENST00000356435		1151	Cgc/Tgc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856554	111856554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037795-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			225	79	211	0	ENST00000341259.2:c.605G>A	p.Arg202His	p.R202H	ENST00000341259	NM_005475.2	202	cGc/cAc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	147	438	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	123	294	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	94	300	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
APC	324	MSKCC	GRCh37	5	112175970	112175970	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	58	230	0	ENST00000257430.4:c.4682delA	p.Lys1561ArgfsTer4	p.K1561Rfs*4	ENST00000257430	NM_000038.5	1560	gAa/ga																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	128	362	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	96	227	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	36	110	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	99	396	0	ENST00000357368.4:c.1821delC	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	205	611	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885956	59885956	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28997569		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	160	401	0	ENST00000259008.2:c.790C>T	p.Arg264Trp	p.R264W	ENST00000259008	NM_032043.2	264	Cgg/Tgg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	83	568	5	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	178	498	2	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	80	323	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	138	431	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
CASP8	841	MSKCC	GRCh37	2	202149917	202149917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	145	522	1	ENST00000358485.4:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000358485	NM_001080125.1	453	cCg/cTg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375459	40375459	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	52	482	0	ENST00000293328.3:c.491del	p.Lys164SerfsTer17	p.K164Sfs*17	ENST00000293328	NM_012448.3	164	aAg/ag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	111	412	0	ENST00000440232.2:c.342delG	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117854	70117854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	53	424	0	ENST00000245479.2:c.322C>T	p.Pro108Ser	p.P108S	ENST00000245479	NM_000346.3	108	Ccc/Tcc																																																																														
POLE	5426	MSKCC	GRCh37	12	133220098	133220099	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	155	548	2	ENST00000320574.5:c.4337_4338dup	p.Val1447TrpfsTer7	p.V1447Wfs*7	ENST00000320574	NM_006231.2	1446	-/TG																																																																														
CIC	23152	MSKCC	GRCh37	19	42799131	42799131	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	157	592	0	ENST00000575354.2:c.4620delC	p.Thr1541LeufsTer79	p.T1541Lfs*79	ENST00000575354	NM_015125.3	1539	Ccc/cc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821620	72821620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	20	50	0	ENST00000268489.5:c.10555G>A	p.Gly3519Ser	p.G3519S	ENST00000268489	NM_006885.3	3519	Ggt/Agt																																																																														
ATR	545	MSKCC	GRCh37	3	142269072	142269072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	148	305	0	ENST00000350721.4:c.2878C>T	p.Arg960Ter	p.R960*	ENST00000350721	NM_001184.3	960	Cga/Tga																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs765875917		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	82	160	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	187	655	5	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	152	400	10	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	171	616	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120148	70120148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	61	221	0	ENST00000245479.2:c.1150A>G	p.Thr384Ala	p.T384A	ENST00000245479	NM_000346.3	384	Acg/Gcg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733223	74733223	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	127	439	0	ENST00000359995.5:c.20del	p.Pro7LeufsTer7	p.P7Lfs*7	ENST00000359995	NM_001195427.1	7	cCt/ct																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	174	574	4	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569955	95569955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	91	329	0	ENST00000343455.3:c.3778G>A	p.Val1260Ile	p.V1260I	ENST00000343455	NM_177438.2	1260	Gta/Ata																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425124	49425124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	221	602	0	ENST00000301067.7:c.13364G>A	p.Arg4455His	p.R4455H	ENST00000301067	NM_003482.3	4455	cGc/cAc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39726940	39726940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	83	202	0	ENST00000361337.2:c.938C>T	p.Thr313Met	p.T313M	ENST00000361337	NM_003286.2	313	aCg/aTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133756012	133756012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	144	409	1	ENST00000318560.5:c.1639G>A	p.Val547Met	p.V547M	ENST00000318560	NM_005157.4	547	Gtg/Atg																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84393376	84393376	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	91	242	0	ENST00000321945.7:c.281del	p.Lys94ArgfsTer4	p.K94Rfs*4	ENST00000321945	NM_139076.2	94	aAg/ag																																																																														
LYN	4067	MSKCC	GRCh37	8	56863053	56863054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	88	421	0	ENST00000519728.1:c.327dup	p.Glu110ArgfsTer40	p.E110Rfs*40	ENST00000519728	NM_002350.3	107	aca/acAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953633	32953633	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	99	337	0	ENST00000380152.3:c.8940del	p.Glu2981LysfsTer7	p.E2981Kfs*7	ENST00000380152		2978	tcA/tc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148507423	148507423	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	85	238	0	ENST00000320356.2:c.2029+2T>C		p.X677_splice	ENST00000320356	NM_004456.4	677																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62325754	62325754	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145335410		P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	145	470	0	ENST00000508582.2:c.3094G>A	p.Val1032Met	p.V1032M	ENST00000508582		1032	Gtg/Atg																																																																														
INSR	3643	MSKCC	GRCh37	19	7117191	7117191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	151	532	0	ENST00000302850.5:c.4025del	p.Gly1342AlafsTer23	p.G1342Afs*23	ENST00000302850	NM_000208.2	1342	gGc/gc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41249283	41249283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	189	299	0	ENST00000357654.3:c.571G>A	p.Val191Ile	p.V191I	ENST00000357654	NM_007294.3	191	Gtt/Att																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9778894	9778894	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	168	479	0	ENST00000377346.4:c.1165del	p.Arg389ValfsTer9	p.R389Vfs*9	ENST00000377346	NM_005026.3	388	gCc/gc																																																																														
MPL	4352	MSKCC	GRCh37	1	43812238	43812238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	109	426	0	ENST00000372470.3:c.1103T>C	p.Val368Ala	p.V368A	ENST00000372470	NM_005373.2	368	gTg/gCg																																																																														
PARP1	142	MSKCC	GRCh37	1	226590047	226590047	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	138	487	0	ENST00000366794.5:c.154T>C	p.Tyr52His	p.Y52H	ENST00000366794	NM_001618.3	52	Tac/Cac																																																																														
SUFU	51684	MSKCC	GRCh37	10	104353782	104353782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	138	424	0	ENST00000369902.3:c.716G>A	p.Arg239Gln	p.R239Q	ENST00000369902	NM_016169.3	239	cGg/cAg																																																																														
PGR	5241	MSKCC	GRCh37	11	100999149	100999149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	127	598	1	ENST00000325455.5:c.653C>T	p.Ala218Val	p.A218V	ENST00000325455	NM_001202474.3	218	gCg/gTg																																																																														
ATM	472	MSKCC	GRCh37	11	108139213	108139213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	171	471	1	ENST00000278616.4:c.2717del	p.Leu906CysfsTer3	p.L906Cfs*3	ENST00000278616	NM_000051.3	905	tgT/tg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498103	498103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	125	327	0	ENST00000399788.2:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000399788	NM_001042603.1	52	cGg/cAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641409	18641409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	29	182	0	ENST00000266497.5:c.2408C>T	p.Ala803Val	p.A803V	ENST00000266497		803	gCt/gTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133249393	133249393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	151	396	0	ENST00000320574.5:c.1506G>T	p.Glu502Asp	p.E502D	ENST00000320574	NM_006231.2	502	gaG/gaT																																																																														
MGA	23269	MSKCC	GRCh37	15	42052627	42052627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	175	341	0	ENST00000219905.7:c.7298G>A	p.Arg2433Gln	p.R2433Q	ENST00000219905	NM_001164273.1	2433	cGg/cAg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40481600	40481600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	44	451	0	ENST00000264657.5:c.1205G>A	p.Gly402Asp	p.G402D	ENST00000264657	NM_139276.2	402	gGc/gAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435761	56435761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	114	371	0	ENST00000407977.2:c.1376C>T	p.Ala459Val	p.A459V	ENST00000407977		459	gCa/gTa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119815	70119816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	165	497	0	ENST00000245479.2:c.818dup	p.Asp274GlyfsTer22	p.D274Gfs*22	ENST00000245479	NM_000346.3	273	gtg/gTtg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5229609	5229609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	22	46	0	ENST00000357368.4:c.2242C>T	p.Arg748Trp	p.R748W	ENST00000357368	NM_002850.3	748	Cgg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41556645	41556645	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	116	293	0	ENST00000263253.7:c.3591-1G>A		p.X1197_splice	ENST00000263253	NM_001429.3	1197																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266877	41266877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	29	292	0	ENST00000349496.5:c.548C>T	p.Ala183Val	p.A183V	ENST00000349496	NM_001904.3	183	gCt/gTt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969147	93969147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	86	286	0	ENST00000369303.4:c.1849C>T	p.Pro617Ser	p.P617S	ENST00000369303	NM_004440.3	617	Cca/Tca																																																																														
FYN	2534	MSKCC	GRCh37	6	112015614	112015614	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	136	326	0	ENST00000368678.4:c.1228C>T	p.Arg410Ter	p.R410*	ENST00000368678		410	Cga/Tga																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271764	38271764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	153	624	0	ENST00000425967.3:c.2185G>A	p.Gly729Ser	p.G729S	ENST00000425967	NM_001174067.1	729	Ggc/Agc																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923410	36923410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	188	575	0	ENST00000358127.4:c.852del	p.Thr285ProfsTer18	p.T285Pfs*18	ENST00000358127	NM_001280556.1	284	ccC/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393629	139393629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	195	622	1	ENST00000277541.6:c.6017C>T	p.Ala2006Val	p.A2006V	ENST00000277541	NM_017617.3	2006	gCc/gTc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	85	544	0	ENST00000347630.2:c.392G>T	p.Trp131Leu	p.W131L	ENST00000347630	NM_001007230.1	131	tGg/tTg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371857	45371857	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0038160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	53	348	1	ENST00000262160.6:c.1136-2A>G		p.X379_splice	ENST00000262160	NM_005901.5	379																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	224	393	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	58	304	0	ENST00000377767.4:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000377767	NM_014953.3	479	Gac/Tac																																																																														
CUL3	8452	MSKCC	GRCh37	2	225378306	225378306	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	74	310	0	ENST00000264414.4:c.589G>T	p.Gly197Ter	p.G197*	ENST00000264414	NM_003590.4	197	Gga/Tga																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324509	31324509	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs41553715		P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	12	50	0	ENST00000412585.2:c.299A>T	p.Glu100Val	p.E100V	ENST00000412585	NM_005514.6	100	gAg/gTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295755	212295755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	52	463	0	ENST00000342788.4:c.2558C>T	p.Ser853Phe	p.S853F	ENST00000342788	NM_005235.2	853	tCt/tTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006897	47006897	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	186	705	0	ENST00000329236.7:c.17G>T	p.Arg6Leu	p.R6L	ENST00000329236	NM_001204466.1	6	cGt/cTt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115266549	115266549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	184	528	0	ENST00000438362.2:c.1966C>T	p.Pro656Ser	p.P656S	ENST00000438362	NM_001242891.1	656	Cca/Tca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46240663	46240663	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	46	302	0	ENST00000334344.6:c.1523A>C	p.His508Pro	p.H508P	ENST00000334344	NM_152641.2	508	cAt/cCt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437508	49437508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	247	631	0	ENST00000301067.7:c.5377G>T	p.Gly1793Trp	p.G1793W	ENST00000301067	NM_003482.3	1793	Ggg/Tgg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061009	38061009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	226	351	0	ENST00000250448.2:c.980G>T	p.Gly327Val	p.G327V	ENST00000250448	NM_004496.3	327	gGg/gTg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609565	81609565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	72	529	0	ENST00000298171.2:c.1163C>G	p.Thr388Ser	p.T388S	ENST00000298171	NM_000369.2	388	aCc/aGc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609626	81609626	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	89	576	0	ENST00000298171.2:c.1224T>A	p.Cys408Ter	p.C408*	ENST00000298171	NM_000369.2	408	tgT/tgA																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88669536	88669536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	57	490	0	ENST00000360948.2:c.1362C>A	p.Asn454Lys	p.N454K	ENST00000360948	NM_001012338.2	454	aaC/aaA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923449	9923449	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	170	575	0	ENST00000330684.3:c.1838T>A	p.Phe613Tyr	p.F613Y	ENST00000330684	NM_001134407.1	613	tTc/tAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923773	72923773	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	111	620	0	ENST00000268489.5:c.3305A>T	p.Asn1102Ile	p.N1102I	ENST00000268489	NM_006885.3	1102	aAc/aTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29528428	29528428	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	118	327	0	ENST00000358273.4:c.1186-1G>C		p.X396_splice	ENST00000358273	NM_001042492.2	396																																																																															
NF1	4763	MSKCC	GRCh37	17	29684345	29684345	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	84	464	0	ENST00000358273.4:c.7928T>A	p.Leu2643Ter	p.L2643*	ENST00000358273	NM_001042492.2	2643	tTa/tAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965713	25965713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	197	664	0	ENST00000435504.4:c.3493G>T	p.Asp1165Tyr	p.D1165Y	ENST00000435504		1165	Gac/Tac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521664	89521664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	151	493	0	ENST00000336596.2:c.2741G>T	p.Arg914Leu	p.R914L	ENST00000336596	NM_005233.5	914	cGc/cTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134898726	134898726	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	105	318	0	ENST00000398015.3:c.1784T>C	p.Ile595Thr	p.I595T	ENST00000398015	NM_004441.4	595	aTt/aCt																																																																														
ATR	545	MSKCC	GRCh37	3	142185376	142185376	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	57	264	0	ENST00000350721.4:c.6688-1G>T		p.X2230_splice	ENST00000350721	NM_001184.3	2230																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66467487	66467487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	143	339	0	ENST00000273854.3:c.782C>A	p.Ser261Tyr	p.S261Y	ENST00000273854	NM_004439.5	261	tCc/tAc																																																																														
APC	324	MSKCC	GRCh37	5	112173667	112173667	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	93	355	0	ENST00000257430.4:c.2376del	p.Lys792AsnfsTer28	p.K792Nfs*28	ENST00000257430	NM_000038.5	792	aaG/aa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486227	8486227	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	132	399	0	ENST00000356435.5:c.2590G>C	p.Asp864His	p.D864H	ENST00000356435		864	Gat/Cat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032557	47032557	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	146	658	1	ENST00000329236.7:c.232C>T	p.Gln78Ter	p.Q78*	ENST00000329236	NM_001204466.1	78	Caa/Taa																																																																														
XIAP	331	MSKCC	GRCh37	X	123026618	123026618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	143	486	0	ENST00000355640.3:c.1094G>T	p.Arg365Ile	p.R365I	ENST00000355640		365	aGa/aTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	125	384	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	107	229	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	28	363	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	117	331	2	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	88	211	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	216	412	4	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	267	700	1	ENST00000269305.4:c.388del	p.Leu130SerfsTer40	p.L130Sfs*40	ENST00000269305	NM_001126112.2	130	Ctc/tc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127460	55127460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	252	446	7	ENST00000257290.5:c.248C>T	p.Thr83Met	p.T83M	ENST00000257290	NM_006206.4	83	aCg/aTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245462	153245462	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	199	425	1	ENST00000281708.4:c.1729T>G	p.Leu577Val	p.L577V	ENST00000281708	NM_033632.3	577	Tta/Gta																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478927	56478927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	360	539	1	ENST00000267101.3:c.383G>T	p.Ser128Ile	p.S128I	ENST00000267101	NM_001982.3	128	aGc/aTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498459	89498459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	116	410	0	ENST00000336596.2:c.2431G>T	p.Gly811Trp	p.G811W	ENST00000336596	NM_005233.5	811	Ggg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	75	540	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	334	696	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	368	408	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99185041	99185041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	146	540	0	ENST00000074304.5:c.2443G>A	p.Asp815Asn	p.D815N	ENST00000074304	NM_001134224.1	815	Gat/Aat																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852565	63852565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	233	629	0	ENST00000279873.7:c.3343C>T	p.Leu1115Phe	p.L1115F	ENST00000279873	NM_032199.2	1115	Ctc/Ttc																																																																														
RARA	5914	MSKCC	GRCh37	17	38508661	38508661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	295	884	0	ENST00000254066.5:c.709A>G	p.Ile237Val	p.I237V	ENST00000254066	NM_000964.3	237	Att/Gtt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435814	56435832	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGGGCCTGGCCCGGCGT	AGGGGGCCTGGCCCGGCGT	-			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	224	680	0	ENST00000407977.2:c.1305_1323del	p.Arg436ThrfsTer60	p.R436Tfs*60	ENST00000407977		435	ctACGCCGGGCCAGGCCCCCT/ct																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987254	2987254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	372	684	0	ENST00000396946.4:c.175G>C	p.Glu59Gln	p.E59Q	ENST00000396946	NM_032415.4	59	Gaa/Caa																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	27	151	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443880	52443880	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	24	146	0	ENST00000460680.1:c.15G>A	p.Trp5Ter	p.W5*	ENST00000460680	NM_004656.3	5	tgG/tgA																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412483	63412483	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	24	139	0	ENST00000330258.3:c.684T>A	p.Asn228Lys	p.N228K	ENST00000330258	NM_152424.3	228	aaT/aaA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306599	41306599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	29	161	0	ENST00000373198.4:c.1060G>A	p.Val354Ile	p.V354I	ENST00000373198	NM_133170.3	354	Gtt/Att																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	107	565	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38591719	38591736	+	inframe_deletion	In_Frame_Del	DEL	ATCCGTGGAGAGCGACTC	ATCCGTGGAGAGCGACTC	-			P-0038193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	47	582	0	ENST00000299084.4:c.179_196del	p.Ile60_Leu65del	p.I60_L65del	ENST00000299084	NM_152594.2	60	ATCCGTGGAGAGCGACTC/-																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161222	56161222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	357	516	0	ENST00000399503.3:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000399503	NM_005921.1	364	cGg/cAg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571966	64571966	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	513	881	0	ENST00000337652.1:c.1688T>A	p.Met563Lys	p.M563K	ENST00000337652	NM_130803.2	563	aTg/aAg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426767	121426767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	70	673	0	ENST00000257555.6:c.458C>T	p.Pro153Leu	p.P153L	ENST00000257555		153	cCc/cTc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	536	638	0	ENST00000369535.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000369535	NM_002524.4	12	gGt/gCt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285694	87285694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	771	824	0	ENST00000277120.3:c.31G>A	p.Ala11Thr	p.A11T	ENST00000277120		11	Gcc/Acc																																																																														
SMO	6608	MSKCC	GRCh37	7	128845590	128845590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	734	766	5	ENST00000249373.3:c.887G>A	p.Arg296His	p.R296H	ENST00000249373	NM_005631.4	296	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577477	7577502	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGTGGCAAGTGGCTCCTGACCTGG	AGGGTGGCAAGTGGCTCCTGACCTGG	-			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	334	703	0	ENST00000269305.4:c.779_782+22del		p.X260_splice	ENST00000269305	NM_001126112.2	260																																																																															
MALT1	10892	MSKCC	GRCh37	18	56400691	56400691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	168	509	4	ENST00000348428.3:c.1285G>T	p.Asp429Tyr	p.D429Y	ENST00000348428	NM_006785.3	429	Gat/Tat																																																																														
EP300	2033	MSKCC	GRCh37	22	41574814	41574814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	511	916	2	ENST00000263253.7:c.7099C>A	p.Pro2367Thr	p.P2367T	ENST00000263253	NM_001429.3	2367	Ccg/Acg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39937133	39937133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	123	540	0	ENST00000378444.4:c.50G>T	p.Ser17Ile	p.S17I	ENST00000378444	NM_001123385.1	17	aGc/aTc																																																																														
APC	324	MSKCC	GRCh37	5	112175477	112175479	+	frameshift_variant	Frame_Shift_Del	DEL	TTT	TTT	A			P-0038195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	349	480	0	ENST00000257430.4:c.4186_4188delinsA	p.Phe1396ArgfsTer12	p.F1396Rfs*12	ENST00000257430	NM_000038.5	1396	TTT/A																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851574	134851574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	206	680	0	ENST00000398015.3:c.980G>A	p.Arg327His	p.R327H	ENST00000398015	NM_004441.4	327	cGc/cAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50921167	50921167	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1322	301	944	2	ENST00000440232.2:c.3287T>A	p.Leu1096Gln	p.L1096Q	ENST00000440232	NM_002691.3	1096	cTg/cAg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31395598	31395598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	264	895	0	ENST00000328111.2:c.2451C>G	p.Asp817Glu	p.D817E	ENST00000328111	NM_006892.3	817	gaC/gaG																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593331	67593331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	166	514	0	ENST00000274335.5:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000274335		693	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175940	112175940	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	240	394	0	ENST00000257430.4:c.4649del	p.Glu1550GlyfsTer15	p.E1550Gfs*15	ENST00000257430	NM_000038.5	1550	gAg/gg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	112	517	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	272	758	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
HGF	3082	MSKCC	GRCh37	7	81336625	81336625	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	118	440	0	ENST00000222390.5:c.1597C>T	p.Arg533Ter	p.R533*	ENST00000222390	NM_000601.4	533	Cga/Tga																																																																														
EZH1	2145	MSKCC	GRCh37	17	40860032	40860032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	140	749	0	ENST00000428826.2:c.1604G>A	p.Cys535Tyr	p.C535Y	ENST00000428826		535	tGc/tAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	185	465	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	143	508	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	511	837	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	107	390	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467748	50467748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	144	679	0	ENST00000331340.3:c.983G>A	p.Arg328His	p.R328H	ENST00000331340	NM_006060.4	328	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175681	112175682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	137	479	0	ENST00000257430.4:c.4391dupA	p.Ser1465GlufsTer4	p.S1465Efs*4	ENST00000257430	NM_000038.5	1464	gag/gAag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411786	63411786	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	476	936	1	ENST00000330258.3:c.1381C>T	p.Gln461Ter	p.Q461*	ENST00000330258	NM_152424.3	461	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	306	591	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	89	333	0				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9858709	9858709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	27	566	0	ENST00000330684.3:c.2692C>T	p.Leu898Phe	p.L898F	ENST00000330684	NM_001134407.1	898	Ctc/Ttc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258079	16258079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	49	634	1	ENST00000375759.3:c.5344G>A	p.Asp1782Asn	p.D1782N	ENST00000375759	NM_015001.2	1782	Gat/Aat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258085	16258085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	50	644	0	ENST00000375759.3:c.5350G>A	p.Glu1784Lys	p.E1784K	ENST00000375759	NM_015001.2	1784	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258858	16258858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	83	799	1	ENST00000375759.3:c.6123G>C	p.Gln2041His	p.Q2041H	ENST00000375759	NM_015001.2	2041	caG/caC																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352591	118352591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	63	636	0	ENST00000534358.1:c.3796C>T	p.Pro1266Ser	p.P1266S	ENST00000534358	NM_005933.3	1266	Ccc/Tcc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372403	118372418	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTCAAAACACAGCT	GAGTCAAAACACAGCT	-			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	76	624	0	ENST00000534358.1:c.6338_6353del	p.Ser2113LysfsTer3	p.S2113Kfs*3	ENST00000534358	NM_005933.3	2112	gaGAGTCAAAACACAGCT/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438297	49438297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	101	584	0	ENST00000301067.7:c.4972G>A	p.Glu1658Lys	p.E1658K	ENST00000301067	NM_003482.3	1658	Gag/Aag																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68878227	68878227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	53	461	0	ENST00000487270.1:c.940G>A	p.Asp314Asn	p.D314N	ENST00000487270	NM_133509.3	314	Gat/Aat																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075245	16075245	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	100	625	0	ENST00000268712.3:c.307T>G	p.Ser103Ala	p.S103A	ENST00000268712	NM_006311.3	103	Tca/Gca																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953269	17953269	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	56	825	0	ENST00000458235.1:c.717C>G	p.Ile239Met	p.I239M	ENST00000458235	NM_000215.3	239	atC/atG																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867774	45867774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	190	908	1	ENST00000391945.4:c.626A>G	p.Tyr209Cys	p.Y209C	ENST00000391945	NM_000400.3	209	tAc/tGc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26022371	26022371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	69	624	0	ENST00000435504.4:c.286G>A	p.Glu96Lys	p.E96K	ENST00000435504		96	Gaa/Aaa																																																																														
ERG	2078	MSKCC	GRCh37	21	39795376	39795376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	38	770	0	ENST00000288319.7:c.344C>G	p.Pro115Arg	p.P115R	ENST00000288319	NM_182918.3	115	cCc/cGc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12393114	12393114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	56	716	0	ENST00000287820.6:c.23C>G	p.Ser8Cys	p.S8C	ENST00000287820	NM_015869.4	8	tCt/tGt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808907	1808907	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs140616343		P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	59	908	0	ENST00000260795.2:c.2339C>G	p.Ser780Cys	p.S780C	ENST00000260795		780	tCc/tGc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135776217	135776217	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	43	536	0	ENST00000298552.3:c.2510del	p.Asn837ThrfsTer12	p.N837Tfs*12	ENST00000298552	NM_001162426.1	837	aAc/ac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950056	44950056	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	57	360	0	ENST00000377967.4:c.3825G>A	p.Trp1275Ter	p.W1275*	ENST00000377967	NM_021140.2	1275	tgG/tgA																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533904	63533904	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201460658		P-0038204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	218	398	0	ENST00000307078.5:c.1250C>T	p.Ala417Val	p.A417V	ENST00000307078	NM_004655.3	417	gCg/gTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	214	354	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0038204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	455	604	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																														
CDK12	51755	MSKCC	GRCh37	17	37667784	37667784	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	250	282	0	ENST00000447079.4:c.2669G>A	p.Arg890His	p.R890H	ENST00000447079	NM_015083.1	890	cGc/cAc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246448	46246449	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0038204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	185	223	0	ENST00000334344.6:c.4543_4544del	p.Val1515LysfsTer8	p.V1515Kfs*8	ENST00000334344	NM_152641.2	1514	acTGta/acta																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522123	157522123	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	159	502	0	ENST00000346085.5:c.4395G>A	p.Trp1465Ter	p.W1465*	ENST00000346085	NM_020732.3	1465	tgG/tgA																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176054998	176054998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	30	408	0	ENST00000367669.3:c.1055C>T	p.Thr352Met	p.T352M	ENST00000367669	NM_022457.5	352	aCg/aTg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201955	67202051	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGTGCGGGGGCCTGAGGCCTGTGGGACCAGGGCACGGATCGTGACTAAGGATGGCAGGCACTGAGTGTCGCATGGCCCTGCCTCCGCCCCCCA	GGTGAGTGCGGGGGCCTGAGGCCTGTGGGACCAGGGCACGGATCGTGACTAAGGATGGCAGGCACTGAGTGTCGCATGGCCCTGCCTCCGCCCCCCA	-			P-0038204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	52	538	0	ENST00000312629.5:c.1155+2_1156del		p.X385_splice	ENST00000312629	NM_003952.2	385																																																																															
RPS6KB2	6199	MSKCC	GRCh37	11	67202163	67202456	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGTACTGAGGGACGTGGGGGTGTGTGGCTGGGTTAGGGACGCTGGCAGGCAGGATGCCAGCTCCAGCCTTGGGTGCCTTGGCCACGTCTGTCGGCCAGTGTTGGCTTCGGTTGCTGTGTCTATCATGGGGACCTCAGTTCCTACACCCCTTGTGGCCAGGCTGCCTGGATGGGAGTTTGTGGAGCCCGCGGCCTGTGTGCCTGGGCAGGTGGGAAAGGCTGCCTTCCCTGACTGAGTGCTGGGAGCCTCTGGCAGGGCCTAGGAGGCTCTTATTCTGCCTTGGTTTCCCCTG	CAGGTACTGAGGGACGTGGGGGTGTGTGGCTGGGTTAGGGACGCTGGCAGGCAGGATGCCAGCTCCAGCCTTGGGTGCCTTGGCCACGTCTGTCGGCCAGTGTTGGCTTCGGTTGCTGTGTCTATCATGGGGACCTCAGTTCCTACACCCCTTGTGGCCAGGCTGCCTGGATGGGAGTTTGTGGAGCCCGCGGCCTGTGTGCCTGGGCAGGTGGGAAAGGCTGCCTTCCCTGACTGAGTGCTGGGAGCCTCTGGCAGGGCCTAGGAGGCTCTTATTCTGCCTTGGTTTCCCCTG	-			P-0038204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	51	592	0	ENST00000312629.5:c.1268+1_1269-1del		p.X423_splice	ENST00000312629	NM_003952.2	423																																																																															
PREX2	80243	MSKCC	GRCh37	8	69046477	69046477	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	34	495	0	ENST00000288368.4:c.3950T>A	p.Leu1317His	p.L1317H	ENST00000288368	NM_024870.2	1317	cTt/cAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0038206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	9	317	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044699	47044699	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0038206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	28	378	0	ENST00000329236.7:c.1867-2A>T		p.X623_splice	ENST00000329236	NM_001204466.1	623																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0038207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	207	662	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0038207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	260	473	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78867632	78867632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	218	733	1	ENST00000306801.3:c.2368G>A	p.Ala790Thr	p.A790T	ENST00000306801	NM_020761.2	790	Gcc/Acc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	493220	493220	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	106	368	0	ENST00000399788.2:c.343C>G	p.Leu115Val	p.L115V	ENST00000399788	NM_001042603.1	115	Ctg/Gtg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435889	56435889	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	156	514	1	ENST00000407977.2:c.1248G>A	p.Trp416Ter	p.W416*	ENST00000407977		416	tgG/tgA																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272335	15272335	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	189	844	0	ENST00000263388.2:c.6104del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2035	gGt/gt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	202	305	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	198	485	0	ENST00000269305.4:c.730G>C	p.Gly244Arg	p.G244R	ENST00000269305	NM_001126112.2	244	Ggc/Cgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948654	71948655	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	121	695	1	ENST00000298229.2:c.3366_3367delinsTT	p.Val1123Leu	p.V1123L	ENST00000298229	NM_001567.3	1122	tcGGtg/tcTTtg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118345013	118345013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	21	218	0	ENST00000534358.1:c.3139G>T	p.Asp1047Tyr	p.D1047Y	ENST00000534358	NM_005933.3	1047	Gac/Tac																																																																														
MGA	23269	MSKCC	GRCh37	15	42040835	42040835	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	62	304	0	ENST00000219905.7:c.5213A>C	p.Glu1738Ala	p.E1738A	ENST00000219905	NM_001164273.1	1738	gAa/gCa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467927	50467927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	78	471	0	ENST00000331340.3:c.1162G>A	p.Ala388Thr	p.A388T	ENST00000331340	NM_006060.4	388	Gcg/Acg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102206751	102206753	+	missense_variant	Missense_Mutation	ONP	GTG	GTG	TTT			P-0038208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	50	338	0	ENST00000263464.3:c.1379_1381delinsTTT	p.Cys460_Val461delinsPheLeu	p.C460_V461delinsFL	ENST00000263464	NM_001165.4	460	tGTGta/tTTTta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	65	330	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0038210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	100	469	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
HGF	3082	MSKCC	GRCh37	7	81332010	81332010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	47	289	0	ENST00000222390.5:c.2074G>T	p.Val692Phe	p.V692F	ENST00000222390	NM_000601.4	692	Gtt/Ttt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593357	48593397	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGATAAAATGTAATTTCTTTTTTCTTCCTAAGGTTGCACAT	AGATAAAATGTAATTTCTTTTTTCTTCCTAAGGTTGCACAT	-			P-0038210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	43	165	0	ENST00000342988.3:c.1140-30_1150del		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0038210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	16	275	0	ENST00000342988.3:c.1160_1161dup	p.Gln388CysfsTer28	p.Q388Cfs*28	ENST00000342988	NM_005359.5	386	ggt/gGTgt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0038216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	36	324	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	69	291	0	ENST00000262160.6:c.1391C>A	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0038216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	34	300	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	88	329	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	61	481	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249501	153249501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1316840275		P-0038216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	46	486	1	ENST00000281708.4:c.1277C>T	p.Ser426Leu	p.S426L	ENST00000281708	NM_033632.3	426	tCa/tTa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67462938	67462939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	98	459	0	ENST00000327367.4:c.656dup	p.Leu219PhefsTer92	p.L219Ffs*92	ENST00000327367	NM_005902.3	218	-/T																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5218520	5218520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	53	797	0	ENST00000357368.4:c.3959G>A	p.Arg1320His	p.R1320H	ENST00000357368	NM_002850.3	1320	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	239	769	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0038236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	75	371	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	80	304	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911548	114911548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	73	533	0	ENST00000543371.1:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000543371	NM_001198531.1	356	Gca/Aca																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031954	10031954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199528312		P-0038236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	119	752	1	ENST00000330684.3:c.869C>T	p.Ala290Val	p.A290V	ENST00000330684	NM_001134407.1	290	gCg/gTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161846	47161846	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	87	402	0	ENST00000409792.3:c.4280T>G	p.Val1427Gly	p.V1427G	ENST00000409792	NM_014159.6	1427	gTt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	939	719	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564327	86564327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	36	569	0	ENST00000274376.6:c.59G>A	p.Gly20Glu	p.G20E	ENST00000274376	NM_002890.2	20	gGa/gAa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137696	64137696	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0038238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	289	748	0	ENST00000334205.4:c.1798-1G>A		p.X600_splice	ENST00000334205	NM_003942.2	600																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118369209	118369209	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	173	426	0	ENST00000534358.1:c.5927A>G	p.Tyr1976Cys	p.Y1976C	ENST00000534358	NM_005933.3	1976	tAt/tGt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346373	89346373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	170	697	0	ENST00000301030.4:c.6577G>A	p.Asp2193Asn	p.D2193N	ENST00000301030	NM_001256183.1	2193	Gac/Aac																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748003	41748003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	31	51	0	ENST00000226382.2:c.766G>T	p.Ala256Ser	p.A256S	ENST00000226382	NM_003924.3	256	Gca/Tca																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286160	66286160	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0038238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	95	287	0	ENST00000273854.3:c.1526del	p.Lys509ArgfsTer22	p.K509Rfs*22	ENST00000273854	NM_004439.5	509	aAg/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0038239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	222	677	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	137	479	0	ENST00000342988.3:c.1611C>G	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaG																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118885	70118885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	211	623	2	ENST00000245479.2:c.457C>T	p.Pro153Ser	p.P153S	ENST00000245479	NM_000346.3	153	Ccc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857476	9857476	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145602289		P-0038239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	141	547	1	ENST00000330684.3:c.3925C>T	p.Arg1309Trp	p.R1309W	ENST00000330684	NM_001134407.1	1309	Cgg/Tgg																																																																														
CCND2	894	MSKCC	GRCh37	12	4387952	4387952	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	814	584	0	ENST00000261254.3:c.438G>C	p.Lys146Asn	p.K146N	ENST00000261254	NM_001759.3	146	aaG/aaC																																																																														
HGF	3082	MSKCC	GRCh37	7	81392119	81392119	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	100	323	0	ENST00000222390.5:c.158T>G	p.Ile53Arg	p.I53R	ENST00000222390	NM_000601.4	53	aTa/aGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	29	483	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
RHOA	387	MSKCC	GRCh37	3	49397740	49397740	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	49	657	0	ENST00000418115.1:c.484A>G	p.Lys162Glu	p.K162E	ENST00000418115	NM_001664.2	162	Aag/Gag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732930	30732931	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0038241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	23	412	0	ENST00000359013.4:c.1620_1621del	p.Glu540AspfsTer4	p.E540Dfs*4	ENST00000359013	NM_001024847.2	540	GAg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	117	603	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023897	27023897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	38	105	0	ENST00000324856.7:c.1003C>A	p.Gln335Lys	p.Q335K	ENST00000324856	NM_006015.4	335	Cag/Aag																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195413	102195413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	38	360	0	ENST00000263464.3:c.173C>T	p.Thr58Ile	p.T58I	ENST00000263464	NM_001165.4	58	aCt/aTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929182	32929182	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	120	487	0	ENST00000380152.3:c.7192A>C	p.Thr2398Pro	p.T2398P	ENST00000380152		2398	Act/Cct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210444	36210444	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0038245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	117	544	0	ENST00000222270.7:c.436+1G>A		p.X146_splice	ENST00000222270	NM_014727.1	146																																																																															
ERCC3	2071	MSKCC	GRCh37	2	128051174	128051174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	62	654	0	ENST00000285398.2:c.149G>A	p.Gly50Asp	p.G50D	ENST00000285398	NM_000122.1	50	gGc/gAc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818198	32818198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	66	615	1	ENST00000354258.4:c.1327G>A	p.Glu443Lys	p.E443K	ENST00000354258	NM_000593.5	443	Gag/Aag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	151	490	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	63	780	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	109	426	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	106	482	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332739	153332739	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	157	524	0	ENST00000281708.4:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000281708	NM_033632.3	73	Cag/Tag																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785525	50785525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	151	579	0	ENST00000398568.2:c.515G>A	p.Arg172His	p.R172H	ENST00000398568	NM_001042412.1	172	cGt/cAt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120279	70120280	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	214	749	0	ENST00000245479.2:c.1282_1283dup	p.Ser429ThrfsTer42	p.S429Tfs*42	ENST00000245479	NM_000346.3	427	-/TA																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371723	45371723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	117	421	0	ENST00000262160.6:c.1268G>A	p.Gly423Glu	p.G423E	ENST00000262160	NM_005901.5	423	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112174685	112174685	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	100	382	0	ENST00000257430.4:c.3394G>T	p.Glu1132Ter	p.E1132*	ENST00000257430	NM_000038.5	1132	Gaa/Taa																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056032	26056032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	98	388	0	ENST00000343677.2:c.625G>A	p.Ala209Thr	p.A209T	ENST00000343677	NM_005319.3	209	Gcg/Acg																																																																														
RB1	5925	MSKCC	GRCh37	13	48954187	48954187	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0038247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	117	208	0	ENST00000267163.4:c.1390-2A>C		p.X464_splice	ENST00000267163	NM_000321.2	464																																																																															
TP53	7157	MSKCC	GRCh37	17	7579461	7579467	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGC	CAGGGGC	-			P-0038247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	801	758	3	ENST00000269305.4:c.220_226del	p.Ala74HisfsTer47	p.A74Hfs*47	ENST00000269305	NM_001126112.2	74	GCCCCTGca/ca																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31394091	31394091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	283	460	0	ENST00000328111.2:c.2378T>C	p.Met793Thr	p.M793T	ENST00000328111	NM_006892.3	793	aTg/aCg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35861051	35861051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	502	322	0	ENST00000303115.3:c.180G>T	p.Glu60Asp	p.E60D	ENST00000303115	NM_002185.3	60	gaG/gaT																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878849	117878849	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	134	399	0	ENST00000297338.2:c.120C>G	p.Ser40Arg	p.S40R	ENST00000297338	NM_006265.2	40	agC/agG																																																																														
ATRX	546	MSKCC	GRCh37	X	76777866	76777866	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0038247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	215	236	0	ENST00000373344.5:c.6850G>T	p.Gly2284Ter	p.G2284*	ENST00000373344	NM_000489.3	2284	Gga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	57	430	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	74	588	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	118	434	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RET	5979	MSKCC	GRCh37	10	43615045	43615045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	244	712	1	ENST00000355710.3:c.2459G>A	p.Arg820His	p.R820H	ENST00000355710	NM_020975.4	820	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0004739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	506	981	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0004739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			830	693	630	1	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
MTOR	2475	MSKCC	GRCh37	1	11199431	11199431	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	175	881	0	ENST00000361445.4:c.5060A>T	p.His1687Leu	p.H1687L	ENST00000361445	NM_004958.3	1687	cAt/cTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133263895	133263895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			586	35	452	0	ENST00000320574.5:c.7C>A	p.Leu3Met	p.L3M	ENST00000320574	NM_006231.2	3	Ctg/Atg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15967433	15967433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004739-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1354	213	755	1	ENST00000268712.3:c.5170C>T	p.Arg1724Trp	p.R1724W	ENST00000268712	NM_006311.3	1724	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			652	54	701	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			741	86	826	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199364	16199364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			564	30	495	0	ENST00000375759.3:c.137G>T	p.Gly46Val	p.G46V	ENST00000375759	NM_015001.2	46	gGa/gTa																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176104215	176104215	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			405	47	362	0	ENST00000367669.3:c.899G>C	p.Ser300Thr	p.S300T	ENST00000367669	NM_022457.5	300	aGt/aCt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865641	57865641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			811	45	940	0	ENST00000228682.2:c.3118C>A	p.Leu1040Ile	p.L1040I	ENST00000228682	NM_005269.2	1040	Ctt/Att																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281393	49281393	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			786	43	930	1	ENST00000282018.3:c.440T>A	p.Leu147Gln	p.L147Q	ENST00000282018	NM_020377.2	147	cTg/cAg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986589	36986589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			529	110	459	0	ENST00000354822.5:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000354822	NM_001079668.2	367	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991701	72991701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			334	27	442	0	ENST00000268489.5:c.2344G>C	p.Ala782Pro	p.A782P	ENST00000268489	NM_006885.3	782	Gcg/Ccg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40879774	40879774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			569	54	537	2	ENST00000428826.2:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000428826		42	tAt/tGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638641	176638641	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030094-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			825	59	890	0	ENST00000439151.2:c.3244del	p.Ala1082GlnfsTer12	p.A1082Qfs*12	ENST00000439151	NM_022455.4	1081	Ggg/gg																																																																														
EP300	2033	MSKCC	GRCh37	22	41536164	41536178	+	inframe_deletion	In_Frame_Del	DEL	CGCCGGATCCTGCTG	CGCCGGATCCTGCTG	-			P-0037814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	86	644	0	ENST00000263253.7:c.1782_1796del	p.Pro595_Ala599del	p.P595_A599del	ENST00000263253	NM_001429.3	594	aCGCCGGATCCTGCTGct/act																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0038120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	122	429	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0038120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	373	693	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0038120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	296	665	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653808	89653808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	36	508	0	ENST00000371953.3:c.106G>A	p.Gly36Arg	p.G36R	ENST00000371953	NM_000314.4	36	Gga/Aga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	292	1002	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092737	27092738	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	54	566	0	ENST00000324856.7:c.2760dup	p.Gly921ArgfsTer15	p.G921Rfs*15	ENST00000324856	NM_006015.4	920	caa/cAaa																																																																														
PGR	5241	MSKCC	GRCh37	11	100998727	100998727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	50	881	0	ENST00000325455.5:c.1075C>T	p.Pro359Ser	p.P359S	ENST00000325455	NM_001202474.3	359	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427251	49427271	+	inframe_deletion	In_Frame_Del	DEL	TGCTGCTGCTGCTGTTGCTGC	TGCTGCTGCTGCTGTTGCTGC	-			P-0038120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	189	759	0	ENST00000301067.7:c.11217_11237del	p.Gln3739_Gln3745del	p.Q3739_Q3745del	ENST00000301067	NM_003482.3	3739	caGCAGCAACAGCAGCAGCAGCAc/cac																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149452969	149452969	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	53	665	0	ENST00000286301.3:c.977A>G	p.Glu326Gly	p.E326G	ENST00000286301	NM_005211.3	326	gAg/gGg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941833	44941837	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0038120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	231	222	0	ENST00000377967.4:c.3159_3163del	p.Arg1054SerfsTer3	p.R1054Sfs*3	ENST00000377967	NM_021140.2	1053	AAAAGa/a																																																																														
AR	367	MSKCC	GRCh37	X	66943634	66943634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	101	395	0	ENST00000374690.3:c.2714C>T	p.Pro905Leu	p.P905L	ENST00000374690	NM_000044.3	905	cCc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0038123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	152	485	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	127	731	3	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612878	228612878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	54	633	1	ENST00000366696.1:c.149G>A	p.Arg50His	p.R50H	ENST00000366696	NM_003493.2	50	cGc/cAc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129246	152129246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	67	678	1	ENST00000206249.3:c.199G>A	p.Ala67Thr	p.A67T	ENST00000206249	NM_000125.3	67	Gcc/Acc																																																																														
LMO1	4004	MSKCC	GRCh37	11	8252034	8252034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	81	701	1	ENST00000335790.3:c.43G>A	p.Val15Ile	p.V15I	ENST00000335790	NM_002315.2	15	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	270	789	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960042	134960042	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	138	699	0	ENST00000398015.3:c.2399A>C	p.Lys800Thr	p.K800T	ENST00000398015	NM_004441.4	800	aAg/aCg																																																																														
APC	324	MSKCC	GRCh37	5	112174670	112174670	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	107	419	0	ENST00000257430.4:c.3379C>T	p.Gln1127Ter	p.Q1127*	ENST00000257430	NM_000038.5	1127	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	56	369	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	122	625	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	127	481	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200018596		P-0038139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	57	458	0	ENST00000263967.3:c.344G>T	p.Arg115Leu	p.R115L	ENST00000263967	NM_006218.2	115	cGa/cTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591126	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAGAAAGAC	GAGAAAGAC	-			P-0038139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	215	394	0	ENST00000274335.5:c.1723_1731del	p.Lys575_Arg577del	p.K575_R577del	ENST00000274335		573	ctGAGAAAGACg/ctg																																																																														
HGF	3082	MSKCC	GRCh37	7	81386512	81386512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	30	444	0	ENST00000222390.5:c.475G>A	p.Glu159Lys	p.E159K	ENST00000222390	NM_000601.4	159	Gaa/Aaa																																																																														
RARA	5914	MSKCC	GRCh37	17	38510570	38510570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	122	628	0	ENST00000254066.5:c.824C>T	p.Thr275Met	p.T275M	ENST00000254066	NM_000964.3	275	aCg/aTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437603	56437603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	145	532	0	ENST00000407977.2:c.859G>A	p.Val287Ile	p.V287I	ENST00000407977		287	Gtc/Atc																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38187315	38187315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	135	651	0	ENST00000317025.8:c.1162G>C	p.Glu388Gln	p.E388Q	ENST00000317025	NM_023034.1	388	Gaa/Caa																																																																														
MED12	9968	MSKCC	GRCh37	X	70344104	70344116	+	frameshift_variant	Frame_Shift_Del	DEL	TATACTTGCACTC	TATACTTGCACTC	-			P-0038139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	16	829	0	ENST00000374080.3:c.1841_1853del	p.Tyr614SerfsTer93	p.Y614Sfs*93	ENST00000374080		614	TATACTTGCACTCtc/tc																																																																														
MED12	9968	MSKCC	GRCh37	X	70344185	70344185	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	16	515	0	ENST00000374080.3:c.1921del	p.Ala641ProfsTer70	p.A641Pfs*70	ENST00000374080		641	Gcc/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	312	504	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	585	762	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
RB1	5925	MSKCC	GRCh37	13	48951053	48951053	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	57	276	0	ENST00000267163.4:c.1216-1G>T		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120480538	120480538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	153	600	0	ENST00000256646.2:c.3279G>T	p.Trp1093Cys	p.W1093C	ENST00000256646	NM_024408.3	1093	tgG/tgT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245873	41245873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	138	644	0	ENST00000357654.3:c.1675G>T	p.Gly559Cys	p.G559C	ENST00000357654	NM_007294.3	559	Ggt/Tgt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888171	81888171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	213	628	0	ENST00000359376.3:c.316C>T	p.Leu106Phe	p.L106F	ENST00000359376	NM_002661.3	106	Ctc/Ttc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	82	639	0	ENST00000412585.2:c.19C>T	p.Arg7Ter	p.R7*	ENST00000412585	NM_005514.6	7	Cga/Tga																																																																														
PARP1	142	MSKCC	GRCh37	1	226549779	226549779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	105	508	0	ENST00000366794.5:c.2854G>T	p.Gly952Cys	p.G952C	ENST00000366794	NM_001618.3	952	Ggc/Tgc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21639413	21639413	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	110	342	0	ENST00000421138.2:c.501G>T	p.Lys167Asn	p.K167N	ENST00000421138		167	aaG/aaT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245527	46245527	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	190	485	0	ENST00000334344.6:c.3621G>C	p.Gln1207His	p.Q1207H	ENST00000334344	NM_152641.2	1207	caG/caC																																																																														
FLT1	2321	MSKCC	GRCh37	13	28959024	28959024	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	138	401	2	ENST00000282397.4:c.2114C>T	p.Pro705Leu	p.P705L	ENST00000282397	NM_002019.4	705	cCt/cTt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423568	88423568	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	251	721	0	ENST00000360948.2:c.2267T>A	p.Phe756Tyr	p.F756Y	ENST00000360948	NM_001012338.2	756	tTc/tAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78923341	78923341	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	212	519	0	ENST00000306801.3:c.3364A>T	p.Thr1122Ser	p.T1122S	ENST00000306801	NM_020761.2	1122	Acg/Tcg																																																																														
YES1	7525	MSKCC	GRCh37	18	739760	739760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	210	634	0	ENST00000314574.4:c.1112C>A	p.Pro371Gln	p.P371Q	ENST00000314574	NM_005433.3	371	cCa/cAa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4101142	4101142	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	68	727	0	ENST00000262948.5:c.581-1G>C		p.X194_splice	ENST00000262948	NM_030662.3	194																																																																															
CIC	23152	MSKCC	GRCh37	19	42798089	42798089	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	249	741	0	ENST00000575354.2:c.4043G>C	p.Arg1348Thr	p.R1348T	ENST00000575354	NM_015125.3	1348	aGg/aCg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860551	45860551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	199	725	0	ENST00000391945.4:c.1456G>T	p.Ala486Ser	p.A486S	ENST00000391945	NM_000400.3	486	Gca/Tca																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659953	227659953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	359	785	0	ENST00000305123.5:c.3502G>A	p.Gly1168Arg	p.G1168R	ENST00000305123	NM_005544.2	1168	Ggg/Agg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663018	227663018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	314	708	2	ENST00000305123.5:c.437G>T	p.Gly146Val	p.G146V	ENST00000305123	NM_005544.2	146	gGg/gTg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561004	9561004	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	243	511	0	ENST00000353224.5:c.778A>T	p.Ser260Cys	p.S260C	ENST00000353224	NM_177990.2	260	Agc/Tgc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130427	29130427	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	160	649	0	ENST00000328354.6:c.283C>G	p.Arg95Gly	p.R95G	ENST00000328354	NM_007194.3	95	Cga/Gga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390992	89390992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	198	627	0	ENST00000336596.2:c.1058G>T	p.Gly353Val	p.G353V	ENST00000336596	NM_005233.5	353	gGc/gTc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119585459	119585459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	169	440	0	ENST00000316626.5:c.926G>A	p.Gly309Glu	p.G309E	ENST00000316626		309	gGa/gAa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1941462	1941462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	65	619	0	ENST00000382891.5:c.1838T>C	p.Phe613Ser	p.F613S	ENST00000382891	NM_133335.3	613	tTt/tCt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356349	66356349	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	188	576	0	ENST00000273854.3:c.1148C>G	p.Thr383Ser	p.T383S	ENST00000273854	NM_004439.5	383	aCt/aGt																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84406222	84406222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	88	314	0	ENST00000321945.7:c.4G>A	p.Glu2Lys	p.E2K	ENST00000321945	NM_139076.2	2	Gag/Aag																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159146	143159146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	55	371	0	ENST00000262992.4:c.707G>C	p.Cys236Ser	p.C236S	ENST00000262992	NM_001101669.1	236	tGt/tCt																																																																														
NPM1	4869	MSKCC	GRCh37	5	170827906	170827907	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAT			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	121	587	0	ENST00000296930.5:c.652_654dup	p.Ser218dup	p.S218dup	ENST00000296930	NM_002520.6	218	cca/cCATca																																																																														
MDC1	9656	MSKCC	GRCh37	6	30668411	30668411	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	141	555	0	ENST00000376406.3:c.6103-2A>T		p.X2035_splice	ENST00000376406	NM_014641.2	2035																																																																															
PARK2	5071	MSKCC	GRCh37	6	162206824	162206824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	205	582	0	ENST00000366898.1:c.851G>T	p.Gly284Val	p.G284V	ENST00000366898	NM_004562.2	284	gGc/gTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81358929	81358929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	278	552	0	ENST00000222390.5:c.1032C>A	p.Phe344Leu	p.F344L	ENST00000222390	NM_000601.4	344	ttC/ttA																																																																														
HGF	3082	MSKCC	GRCh37	7	81374356	81374356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	160	465	2	ENST00000222390.5:c.706G>T	p.Asp236Tyr	p.D236Y	ENST00000222390	NM_000601.4	236	Gat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521421	8521421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	57	772	0	ENST00000356435.5:c.817G>A	p.Ala273Thr	p.A273T	ENST00000356435		273	Gca/Aca																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342670	87342670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	253	711	2	ENST00000277120.3:c.955T>C	p.Tyr319His	p.Y319H	ENST00000277120		319	Tat/Cat																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239956	98239956	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	248	573	0	ENST00000331920.6:c.1376G>T	p.Arg459Leu	p.R459L	ENST00000331920	NM_000264.3	459	cGc/cTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76918903	76918903	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	177	701	0	ENST00000373344.5:c.4088A>T	p.His1363Leu	p.H1363L	ENST00000373344	NM_000489.3	1363	cAt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0038145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	74	722	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445068	49445068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	54	704	0	ENST00000301067.7:c.2398C>T	p.Gln800Ter	p.Q800*	ENST00000301067	NM_003482.3	800	Cag/Tag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115960	8115960	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	49	389	0	ENST00000346208.3:c.1306del	p.Ser436ProfsTer39	p.S436Pfs*39	ENST00000346208		436	Tcc/cc																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56770029	56770029	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	58	598	2	ENST00000337432.4:c.25G>T	p.Glu9Ter	p.E9*	ENST00000337432	NM_058216.2	9	Gaa/Taa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912194	127912194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	45	310	0	ENST00000373547.4:c.676C>G	p.His226Asp	p.H226D	ENST00000373547	NM_002721.4	226	Cat/Gat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135801050	135801050	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	94	627	0	ENST00000298552.3:c.287T>A	p.Val96Asp	p.V96D	ENST00000298552	NM_001162426.1	96	gTc/gAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70341249	70341249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	62	589	1	ENST00000374080.3:c.808G>A	p.Asp270Asn	p.D270N	ENST00000374080		270	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7576858	7576858	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	404	664	0	ENST00000269305.4:c.988del	p.Leu330PhefsTer15	p.L330Ffs*15	ENST00000269305	NM_001126112.2	330	Ctt/tt																																																																														
TET1	80312	MSKCC	GRCh37	10	70405218	70405218	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0038147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	60	604	0	ENST00000373644.4:c.2732C>G	p.Ser911Ter	p.S911*	ENST00000373644	NM_030625.2	911	tCa/tGa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21636509	21636509	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0038147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	69	367	1	ENST00000421138.2:c.502-1G>C		p.X168_splice	ENST00000421138		168																																																																															
NF2	4771	MSKCC	GRCh37	22	30074251	30074254	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0038147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	208	589	0	ENST00000338641.4:c.1515_1518del	p.Phe507ThrfsTer7	p.F507Tfs*7	ENST00000338641	NM_000268.3	505	CTGTct/ct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	135	451	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560937	9560937	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	147	541	0	ENST00000353224.5:c.845T>C	p.Met282Thr	p.M282T	ENST00000353224	NM_177990.2	282	aTg/aCg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396359	139396359	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	94	793	1	ENST00000277541.6:c.5479G>T	p.Glu1827Ter	p.E1827*	ENST00000277541	NM_017617.3	1827	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	174	582	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	79	314	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161949	47161949	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	161	456	0	ENST00000409792.3:c.4177T>G	p.Leu1393Val	p.L1393V	ENST00000409792	NM_014159.6	1393	Tta/Gta																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747945	41747945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	99	196	0	ENST00000226382.2:c.824C>A	p.Pro275His	p.P275H	ENST00000226382	NM_003924.3	275	cCc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70345907	70345907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	150	476	0	ENST00000374080.3:c.2444G>A	p.Arg815Gln	p.R815Q	ENST00000374080		815	cGg/cAg																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281768	49281768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	103	921	0	ENST00000282018.3:c.815C>A	p.Thr272Lys	p.T272K	ENST00000282018	NM_020377.2	272	aCg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578195	7578199	+	frameshift_variant	Frame_Shift_Del	DEL	CACCA	CACCA	-			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	175	777	0	ENST00000269305.4:c.650_654del	p.Val217AlafsTer3	p.V217Afs*3	ENST00000269305	NM_001126112.2	217	gTGGTG/g																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16005051	16005051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	165	705	0	ENST00000268712.3:c.2203G>A	p.Glu735Lys	p.E735K	ENST00000268712	NM_006311.3	735	Gag/Aag																																																																														
PMS1	5378	MSKCC	GRCh37	2	190742126	190742126	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	103	454	0	ENST00000441310.2:c.2763T>G	p.Phe921Leu	p.F921L	ENST00000441310	NM_000534.4	921	ttT/ttG																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965644	93965644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	137	578	0	ENST00000369303.4:c.2284C>G	p.Arg762Gly	p.R762G	ENST00000369303	NM_004440.3	762	Cgc/Ggc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69011960	69011960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	108	735	0	ENST00000288368.4:c.2597A>G	p.Asn866Ser	p.N866S	ENST00000288368	NM_024870.2	866	aAc/aGc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197014	123197014	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	98	454	0	ENST00000218089.9:c.1780T>A	p.Tyr594Asn	p.Y594N	ENST00000218089	NM_001042749.1	594	Tac/Aac																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	216	744	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056053	26056067	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGGCTTAGCGG	CCTTGGGCTTAGCGG	-	rs756916945		P-0038153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	67	486	0	ENST00000343677.2:c.590_604del	p.Ala197_Lys201del	p.A197_K201del	ENST00000343677	NM_005319.3	197	gCCGCTAAGCCCAAGGtt/gtt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56770139	56770139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	214	640	0	ENST00000337432.4:c.135G>C	p.Glu45Asp	p.E45D	ENST00000337432	NM_058216.2	45	gaG/gaC																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285779	198285779	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	29	532	0	ENST00000335508.6:c.274A>C	p.Asn92His	p.N92H	ENST00000335508	NM_012433.2	92	Aat/Cat																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437846	52437846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	294	945	0	ENST00000460680.1:c.1315G>T	p.Val439Leu	p.V439L	ENST00000460680	NM_004656.3	439	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	337	634	0	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839802	27839802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	39	627	0	ENST00000328488.2:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000328488	NM_003533.2	98	Gag/Cag																																																																														
NF1	4763	MSKCC	GRCh37	17	29684380	29684415	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGTTGTGTAAGTATCTCCTTTTGATTTTAATTCA	CCTGTTGTGTAAGTATCTCCTTTTGATTTTAATTCA	-			P-0038154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	159	470	0	ENST00000358273.4:c.7966_7970+31del		p.X2656_splice	ENST00000358273	NM_001042492.2	2656																																																																															
GATA2	2624	MSKCC	GRCh37	3	128202785	128202785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	398	748	0	ENST00000341105.2:c.935G>A	p.Gly312Asp	p.G312D	ENST00000341105	NM_032638.4	312	gGc/gAc																																																																														
KDR	3791	MSKCC	GRCh37	4	55984821	55984821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	299	647	0	ENST00000263923.4:c.308G>T	p.Cys103Phe	p.C103F	ENST00000263923	NM_002253.2	103	tGc/tTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163739	32163739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	243	693	0	ENST00000375023.3:c.5487C>A	p.His1829Gln	p.H1829Q	ENST00000375023	NM_004557.3	1829	caC/caA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0025990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			693	214	642	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175663	112175663	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143796828		P-0025990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	50	258	0	ENST00000257430.4:c.4372C>T	p.Pro1458Ser	p.P1458S	ENST00000257430	NM_000038.5	1458	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	329	724	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	372	980	5	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245779	41245779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	137	717	0	ENST00000357654.3:c.1769G>C	p.Ser590Thr	p.S590T	ENST00000357654	NM_007294.3	590	aGt/aCt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467502	25467502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	78	833	1	ENST00000264709.3:c.1574C>T	p.Ala525Val	p.A525V	ENST00000264709	NM_175629.2	525	gCg/gTg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683358	88683358	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	446	977	0	ENST00000372037.3:c.1481G>T	p.Arg494Leu	p.R494L	ENST00000372037	NM_004329.2	494	cGa/cTa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246226	41246226	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	114	615	0	ENST00000357654.3:c.1322T>C	p.Ile441Thr	p.I441T	ENST00000357654	NM_007294.3	441	aTa/aCa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39567809	39567809	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	90	315	0	ENST00000262039.4:c.567del	p.Val190Ter	p.V190*	ENST00000262039	NM_002647.2	189	Aaa/aa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121160	11121160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	683	1002	1	ENST00000344626.4:c.2227G>T	p.Asp743Tyr	p.D743Y	ENST00000344626	NM_003072.3	743	Gac/Tac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121163	11121163	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	672	995	1	ENST00000344626.4:c.2230A>T	p.Lys744Ter	p.K744*	ENST00000344626	NM_003072.3	744	Aag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295777	15295777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	731	1209	1	ENST00000263388.2:c.2350G>T	p.Gly784Cys	p.G784C	ENST00000263388	NM_000435.2	784	Ggc/Tgc																																																																														
NF2	4771	MSKCC	GRCh37	22	30077432	30077432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	146	290	0	ENST00000338641.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000338641	NM_000268.3	527	Gaa/Aaa																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119634996	119634996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	53	300	0	ENST00000316626.5:c.503G>T	p.Ser168Ile	p.S168I	ENST00000316626		168	aGt/aTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911427	134911427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	107	611	2	ENST00000398015.3:c.1892G>T	p.Gly631Val	p.G631V	ENST00000398015	NM_004441.4	631	gGa/gTa																																																																														
APC	324	MSKCC	GRCh37	5	112175957	112175958	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	124	335	0	ENST00000257430.4:c.4666_4667insG	p.Thr1556SerfsTer3	p.T1556Sfs*3	ENST00000257430	NM_000038.5	1556	act/aGct																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046063	180046063	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	137	222	0	ENST00000261937.6:c.2808del	p.Asn937ThrfsTer70	p.N937Tfs*70	ENST00000261937	NM_182925.4	936	tcC/tc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975472	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	190	406	0	ENST00000405192.2:c.415A>G	p.Thr139Ala	p.T139A	ENST00000405192	NM_001163147.1	139	Aca/Gca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	400	695	1	ENST00000269305.4:c.102dupC	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620539	52620539	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143085435		P-0037988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	141	537	0	ENST00000394830.3:c.3214G>A	p.Val1072Met	p.V1072M	ENST00000394830	NM_018313.4	1072	Gtg/Atg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	11	603	3	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008339-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	209	261	1	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
AR	367	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008339-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	71	163	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128051246	128051246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008339-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	98	470	0	ENST00000285398.2:c.77A>G	p.Glu26Gly	p.E26G	ENST00000285398	NM_000122.1	26	gAa/gGa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0008339-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	70	351	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																														
ALK	238	MSKCC	GRCh37	2	29917733	29917733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008339-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			700	96	543	0	ENST00000389048.3:c.935C>A	p.Ser312Tyr	p.S312Y	ENST00000389048	NM_004304.4	312	tCt/tAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	126	784	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	24	805	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	143	566	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988309	36988309	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	72	522	1	ENST00000354822.5:c.344delG	p.Gly115AlafsTer10	p.G115Afs*10	ENST00000354822	NM_001079668.2	115	gGc/gc																																																																														
MED12	9968	MSKCC	GRCh37	X	70339328	70339328	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	118	469	0	ENST00000374080.3:c.204+1G>T		p.X68_splice	ENST00000374080		68																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354375	354375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	223	851	0	ENST00000262320.3:c.1183C>T	p.Arg395Cys	p.R395C	ENST00000262320	NM_003502.3	395	Cgc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	148	540	0	ENST00000371953.3:c.70G>T	p.Asp24Tyr	p.D24Y	ENST00000371953	NM_000314.4	24	Gac/Tac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692818	89692818	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	69	257	0	ENST00000371953.3:c.302del	p.Ile101ThrfsTer12	p.I101Tfs*12	ENST00000371953	NM_000314.4	101	aTc/ac																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245927443	245927443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	88	457	2	ENST00000388985.4:c.1085delT	p.Phe362SerfsTer12	p.F362Sfs*12	ENST00000388985		362	tTc/tc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210725	36210725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	151	919	0	ENST00000222270.7:c.481del	p.Leu161PhefsTer6	p.L161Ffs*6	ENST00000222270	NM_014727.1	159	aCc/ac																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206648218	206648218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	68	451	0	ENST00000367120.3:c.239G>A	p.Arg80Gln	p.R80Q	ENST00000367120	NM_014002.3	80	cGg/cAg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646190	3646190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	40	928	0	ENST00000294008.3:c.1888G>A	p.Gly630Ser	p.G630S	ENST00000294008	NM_032444.2	630	Ggc/Agc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492704	56492706	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	107	503	0	ENST00000407977.2:c.233_235del	p.Ala78del	p.A78del	ENST00000407977		78	gCAGaa/gaa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350605	15350605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	197	965	0	ENST00000263377.2:c.3310C>G	p.Pro1104Ala	p.P1104A	ENST00000263377	NM_058243.2	1104	Ccc/Gcc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046915	128046915	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	29	505	0	ENST00000285398.2:c.820C>T	p.Gln274Ter	p.Q274*	ENST00000285398	NM_000122.1	274	Cag/Tag																																																																														
SMO	6608	MSKCC	GRCh37	7	128829195	128829195	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	13	347	0	ENST00000249373.3:c.207del	p.Cys70AlafsTer52	p.C70Afs*52	ENST00000249373	NM_005631.4	68	gCc/gc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	146	433	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
WT1	7490	MSKCC	GRCh37	11	32456599	32456599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	337	136	0	ENST00000332351.3:c.293G>T	p.Gly98Val	p.G98V	ENST00000332351	NM_024426.4	98	gGc/gTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244567	46244567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	36	424	0	ENST00000334344.6:c.2661A>C	p.Gln887His	p.Q887H	ENST00000334344	NM_152641.2	887	caA/caC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	231	477	0	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863391	57863391	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139792497		P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	223	543	0	ENST00000228682.2:c.1486C>T	p.Arg496Cys	p.R496C	ENST00000228682	NM_005269.2	496	Cgc/Tgc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514944	103514944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	66	259	0	ENST00000355739.4:c.1445G>T	p.Gly482Val	p.G482V	ENST00000355739	NM_000123.3	482	gGg/gTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42028715	42028715	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	193	440	0	ENST00000219905.7:c.4253A>G	p.Asp1418Gly	p.D1418G	ENST00000219905	NM_001164273.1	1418	gAt/gGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830754	3830754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	137	292	0	ENST00000262367.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000262367	NM_004380.2	601	cGg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	391	470	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
CDK12	51755	MSKCC	GRCh37	17	37676284	37676284	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	227	473	0	ENST00000447079.4:c.3039G>C	p.Gln1013His	p.Q1013H	ENST00000447079	NM_015083.1	1013	caG/caC																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215336	5215336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	204	496	0	ENST00000357368.4:c.4282T>C	p.Tyr1428His	p.Y1428H	ENST00000357368	NM_002850.3	1428	Tat/Cat																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627293	14627293	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2209	237	666	0	ENST00000254322.2:c.777G>C	p.Arg259Ser	p.R259S	ENST00000254322	NM_006145.1	259	agG/agC																																																																														
ALK	238	MSKCC	GRCh37	2	30143051	30143052	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	185	712	4	ENST00000389048.3:c.474dup	p.Gly159ArgfsTer67	p.G159Rfs*67	ENST00000389048	NM_004304.4	158	-/C																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607416	46607416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	260	719	1	ENST00000263734.3:c.1605G>A	p.Met535Ile	p.M535I	ENST00000263734	NM_001430.4	535	atG/atA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713346	40713346	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	204	542	0	ENST00000373198.4:c.4169A>T	p.Glu1390Val	p.E1390V	ENST00000373198	NM_133170.3	1390	gAg/gTg																																																																														
ERG	2078	MSKCC	GRCh37	21	39755426	39755427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	157	422	1	ENST00000288319.7:c.1338dup	p.Ala447CysfsTer19	p.A447Cfs*19	ENST00000288319	NM_182918.3	446	-/T																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	76	260	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541087	187541087	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	94	286	0	ENST00000441802.2:c.6653T>C	p.Ile2218Thr	p.I2218T	ENST00000441802	NM_005245.3	2218	aTc/aCc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052920	180052920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	300	673	0	ENST00000261937.6:c.1370A>G	p.Gln457Arg	p.Q457R	ENST00000261937	NM_182925.4	457	cAg/cGg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120287	94120287	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	83	225	0	ENST00000369303.4:c.764A>T	p.Glu255Val	p.E255V	ENST00000369303	NM_004440.3	255	gAa/gTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140439721	140439721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	134	363	0	ENST00000288602.6:c.2018A>G	p.Tyr673Cys	p.Y673C	ENST00000288602	NM_004333.4	673	tAc/tGc																																																																														
BRAF	673	MSKCC	GRCh37	7	140494139	140494139	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	224	580	0	ENST00000288602.6:c.1109A>T	p.His370Leu	p.H370L	ENST00000288602	NM_004333.4	370	cAt/cTt																																																																														
RHEB	6009	MSKCC	GRCh37	7	151168675	151168675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	73	350	0	ENST00000262187.5:c.292G>A	p.Val98Ile	p.V98I	ENST00000262187	NM_005614.3	98	Gtt/Att																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981791	70981791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	650	661	0	ENST00000276594.2:c.305A>G	p.Tyr102Cys	p.Y102C	ENST00000276594	NM_024504.3	102	tAc/tGc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430637	80430637	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	60	252	0	ENST00000286548.4:c.371T>A	p.Phe124Tyr	p.F124Y	ENST00000286548	NM_002072.3	124	tTt/tAt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98238393	98238393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	130	386	0	ENST00000331920.6:c.1651A>G	p.Thr551Ala	p.T551A	ENST00000331920	NM_000264.3	551	Acg/Gcg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44913137	44913137	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1740	121	388	0	ENST00000377967.4:c.812A>G	p.Gln271Arg	p.Q271R	ENST00000377967	NM_021140.2	271	cAg/cGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045893	47045894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCGGCCTGGGTGCACCGGCCTG			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1230	125	454	0	ENST00000329236.7:c.2470_2471insCGGCCTGTCCGGCCTGGGTGCAC	p.Arg824ProfsTer30	p.R824Pfs*30	ENST00000329236	NM_001204466.1	818	-/TCCGGCCTGGGTGCACCGGCCTG																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649532	48649532	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	1014	573	0	ENST00000376670.3:c.16C>G	p.Leu6Val	p.L6V	ENST00000376670	NM_002049.3	6	Ctg/Gtg																																																																														
BTK	695	MSKCC	GRCh37	X	100608307	100608308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	108	524	0	ENST00000308731.7:c.1782dup	p.Lys595GlufsTer5	p.K595Efs*5	ENST00000308731	NM_000061.2	594	-/G																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453397	40453398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0038069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	28	370	0	ENST00000345506.4:c.1094_1095insC	p.Pro366SerfsTer11	p.P366Sfs*11	ENST00000345506	NM_003152.3	365	aat/aaCt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	136	277	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	443	966	0	ENST00000269305.4:c.489C>A	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taA																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724530	162724530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	250	551	0	ENST00000367921.3:c.302G>T	p.Gly101Val	p.G101V	ENST00000367921	NM_006182.2	101	gGg/gTg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28605715	28605715	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	279	715	0	ENST00000253063.3:c.1319A>G	p.Tyr440Cys	p.Y440C	ENST00000253063	NM_031459.4	440	tAc/tGc																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166098	118166098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	71	402	0	ENST00000369448.3:c.608C>T	p.Ser203Phe	p.S203F	ENST00000369448	NM_017709.3	203	tCt/tTt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671197	30671197	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	243	754	0	ENST00000376406.3:c.5680A>T	p.Lys1894Ter	p.K1894*	ENST00000376406	NM_014641.2	1894	Aaa/Taa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127920606	127920606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	134	538	0	ENST00000373547.4:c.293C>A	p.Ala98Glu	p.A98E	ENST00000373547	NM_002721.4	98	gCa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	157	620	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	157	620	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	157	620	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0038081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	230	987	1	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64288917	64288917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	147	535	1	ENST00000370651.3:c.313G>A	p.Val105Ile	p.V105I	ENST00000370651	NM_003463.4	105	Gtt/Att																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0038082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	111	382	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717730	89717730	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	149	444	0	ENST00000371953.3:c.755A>T	p.Asp252Val	p.D252V	ENST00000371953	NM_000314.4	252	gAt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	168	573	0	ENST00000263967.3:c.1625A>C	p.Glu542Ala	p.E542A	ENST00000263967	NM_006218.2	542	gAa/gCa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711875	89711875	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0038082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	260	405	0	ENST00000371953.3:c.493G>T	p.Gly165Ter	p.G165*	ENST00000371953	NM_000314.4	165	Gga/Tga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650654	67650654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	128	428	0	ENST00000264010.4:c.959G>A	p.Arg320His	p.R320H	ENST00000264010	NM_006565.3	320	cGt/cAt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3644528	3644528	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	230	949	0	ENST00000294008.3:c.2086C>G	p.Gln696Glu	p.Q696E	ENST00000294008	NM_032444.2	696	Cag/Gag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38967464	38967464	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	131	369	0	ENST00000357387.3:c.1126A>G	p.Ile376Val	p.I376V	ENST00000357387	NM_152756.3	376	Att/Gtt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591077	67591079	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0038082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	72	335	0	ENST00000274335.5:c.1670_1672del	p.Arg557_Glu558delinsGln	p.R557_E558delinsQ	ENST00000274335		557	cGAGaa/caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	28	494	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832394	72832394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	55	533	0	ENST00000268489.5:c.4187G>A	p.Arg1396His	p.R1396H	ENST00000268489	NM_006885.3	1396	cGc/cAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044955	47044955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1450	127	1070	0	ENST00000329236.7:c.2047T>C	p.Cys683Arg	p.C683R	ENST00000329236	NM_001204466.1	683	Tgt/Cgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101402	27101402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	140	508	3	ENST00000324856.7:c.4689del	p.Met1564Ter	p.M1564*	ENST00000324856	NM_006015.4	1562	Ccc/cc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	136	352	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	170	682	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	154	449	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	209	662	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	388	749	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	249	821	1	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	167	724	7	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	150	438	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	211	523	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346884	73346884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	92	273	0	ENST00000377767.4:c.1333del	p.Ser445HisfsTer20	p.S445Hfs*20	ENST00000377767	NM_014953.3	445	Tca/ca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	217	572	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549752	187549752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	136	440	0	ENST00000441802.2:c.4489A>G	p.Arg1497Gly	p.R1497G	ENST00000441802	NM_005245.3	1497	Aga/Gga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349730	15349730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	182	863	1	ENST00000263377.2:c.3844C>T	p.Arg1282Cys	p.R1282C	ENST00000263377	NM_058243.2	1282	Cgc/Tgc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	236	804	8	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
MSH2	4436	MSKCC	GRCh37	2	47698146	47698147	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	120	352	0	ENST00000233146.2:c.1705_1706delGA	p.Glu569IlefsTer2	p.E569Ifs*2	ENST00000233146	NM_000251.2	568	acAGaa/acaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800900	18800900	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	120	399	0	ENST00000266497.5:c.4276C>T	p.Arg1426Ter	p.R1426*	ENST00000266497		1426	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851717	134851717	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150028142		P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	160	602	0	ENST00000398015.3:c.1123G>A	p.Asp375Asn	p.D375N	ENST00000398015	NM_004441.4	375	Gac/Aac																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	157	509	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906958	32906958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	150	434	1	ENST00000380152.3:c.1343G>A	p.Arg448His	p.R448H	ENST00000380152		448	cGt/cAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408879	41408879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	159	496	1	ENST00000373198.4:c.547C>T	p.Arg183Trp	p.R183W	ENST00000373198	NM_133170.3	183	Cgg/Tgg																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	138	501	10	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134251	11134251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	179	709	1	ENST00000344626.4:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000344626	NM_003072.3	973	Cgg/Tgg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56872937	56872937	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	116	310	3	ENST00000308159.5:c.2097delT	p.Phe699LeufsTer19	p.F699Lfs*19	ENST00000308159	NM_014669.4	698	Ttt/tt																																																																														
ERG	2078	MSKCC	GRCh37	21	39755427	39755427	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	152	543	4	ENST00000288319.7:c.1338delT	p.Phe446LeufsTer59	p.F446Lfs*59	ENST00000288319	NM_182918.3	446	ttT/tt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	175	767	1	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148543606	148543606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	181	469	0	ENST00000320356.2:c.202G>A	p.Val68Met	p.V68M	ENST00000320356	NM_004456.4	68	Gtg/Atg																																																																														
PARK2	5071	MSKCC	GRCh37	6	162394380	162394380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	119	365	2	ENST00000366898.1:c.688G>A	p.Ala230Thr	p.A230T	ENST00000366898	NM_004562.2	230	Gca/Aca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	166	740	1	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	273	1026	7	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	171	868	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	258	570	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
TEK	7010	MSKCC	GRCh37	9	27213538	27213538	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	157	520	0	ENST00000380036.4:c.2938del	p.Ile980Ter	p.I980*	ENST00000380036	NM_000459.3	978	gcA/gc																																																																														
TET2	54790	MSKCC	GRCh37	4	106193850	106193850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	111	314	1	ENST00000380013.4:c.4317del	p.Lys1439AsnfsTer9	p.K1439Nfs*9	ENST00000380013	NM_001127208.2	1438	Aaa/aa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98218668	98218668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	141	370	0	ENST00000331920.6:c.3196G>A	p.Glu1066Lys	p.E1066K	ENST00000331920	NM_000264.3	1066	Gag/Aag																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980604	70980604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	181	624	0	ENST00000276594.2:c.773C>T	p.Thr258Met	p.T258M	ENST00000276594	NM_024504.3	258	aCg/aTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717712	89717712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	170	431	0	ENST00000371953.3:c.737C>T	p.Pro246Leu	p.P246L	ENST00000371953	NM_000314.4	246	cCg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	205	554	0	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316397	14316397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	150	449	0	ENST00000256196.4:c.208G>A	p.Ala70Thr	p.A70T	ENST00000256196		70	Gca/Aca																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31405819	31405819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	89	248	3	ENST00000344624.3:c.3959C>T	p.Ala1320Val	p.A1320V	ENST00000344624		1320	gCg/gTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	211	917	4	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																														
TSC2	7249	MSKCC	GRCh37	16	2120560	2120560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	266	904	1	ENST00000219476.3:c.1820C>T	p.Ala607Val	p.A607V	ENST00000219476	NM_000548.3	607	gCg/gTg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349471	73349471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	160	454	1	ENST00000377767.4:c.865G>A	p.Glu289Lys	p.E289K	ENST00000377767	NM_014953.3	289	Gaa/Aaa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131930584	131930584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	72	229	0	ENST00000265335.6:c.1817A>G	p.Gln606Arg	p.Q606R	ENST00000265335		606	cAg/cGg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510219	187510219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	182	485	1	ENST00000441802.2:c.13294G>A	p.Glu4432Lys	p.E4432K	ENST00000441802	NM_005245.3	4432	Gaa/Aaa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244326	5244326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	212	914	1	ENST00000357368.4:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000357368	NM_002850.3	386	Cgt/Tgt																																																																														
SRC	6714	MSKCC	GRCh37	20	36031619	36031619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	180	814	4	ENST00000358208.4:c.1448G>A	p.Arg483Gln	p.R483Q	ENST00000358208		483	cGg/cAg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456466	99456466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	123	502	0	ENST00000268035.6:c.1783C>T	p.Arg595Cys	p.R595C	ENST00000268035	NM_000875.3	595	Cgt/Tgt																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175957465	175957465	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	180	514	0	ENST00000367669.3:c.1931A>G	p.Asn644Ser	p.N644S	ENST00000367669	NM_022457.5	644	aAc/aGc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94918482	94918482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	181	485	1	ENST00000536441.1:c.700G>A	p.Val234Ile	p.V234I	ENST00000536441	NM_144665.3	234	Gtt/Att																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557791	21557791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	234	746	1	ENST00000382592.4:c.2054C>T	p.Ala685Val	p.A685V	ENST00000382592	NM_014572.2	685	gCt/gTt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712713	43712713	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	236	806	0	ENST00000382044.4:c.4471T>G	p.Phe1491Val	p.F1491V	ENST00000382044	NM_001141980.1	1491	Ttt/Gtt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969788	81969788	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	154	537	0	ENST00000359376.3:c.2857C>T	p.Arg953Ter	p.R953*	ENST00000359376	NM_002661.3	953	Cga/Tga																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66525125	66525125	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	116	245	0	ENST00000358598.2:c.887del	p.Leu296Ter	p.L296*	ENST00000358598	NM_212471.2	295	aTt/at																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603021	48603021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	120	274	0	ENST00000342988.3:c.1322G>A	p.Arg441His	p.R441H	ENST00000342988	NM_005359.5	441	cGt/cAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094846	11094846	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	160	980	0	ENST00000344626.4:c.22del	p.Leu8TrpfsTer35	p.L8Wfs*35	ENST00000344626	NM_003072.3	7	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229010	36229010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	268	745	0	ENST00000222270.7:c.7790C>T	p.Ala2597Val	p.A2597V	ENST00000222270	NM_014727.1	2597	gCg/gTg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735524	204735524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	122	520	1	ENST00000302823.3:c.325G>A	p.Gly109Arg	p.G109R	ENST00000302823	NM_005214.4	109	Gga/Aga																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144527	55144527	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	113	387	0	ENST00000257290.5:c.2003-2A>G		p.X668_splice	ENST00000257290	NM_006206.4	668																																																																															
TET2	54790	MSKCC	GRCh37	4	106156805	106156805	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	188	521	0	ENST00000380013.4:c.1709del	p.Pro570LeufsTer10	p.P570Lfs*10	ENST00000380013	NM_001127208.2	569	gCc/gc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56183279	56183279	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	197	544	0	ENST00000399503.3:c.4189T>G	p.Ser1397Ala	p.S1397A	ENST00000399503	NM_005921.1	1397	Tca/Gca																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564686	86564686	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	165	765	0	ENST00000274376.6:c.422del	p.Pro141LeufsTer33	p.P141Lfs*33	ENST00000274376	NM_002890.2	140	Ccc/cc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056044	26056044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	99	335	0	ENST00000343677.2:c.613C>T	p.Pro205Ser	p.P205S	ENST00000343677	NM_005319.3	205	Cct/Tct																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468060	50468060	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	114	484	0	ENST00000331340.3:c.1295A>G	p.His432Arg	p.H432R	ENST00000331340	NM_006060.4	432	cAc/cGc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508275	106508275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	118	399	0	ENST00000359195.3:c.269G>A	p.Arg90Gln	p.R90Q	ENST00000359195	NM_002649.2	90	cGg/cAg																																																																														
RHEB	6009	MSKCC	GRCh37	7	151164275	151164275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	163	570	0	ENST00000262187.5:c.485G>T	p.Arg162Met	p.R162M	ENST00000262187	NM_005614.3	162	aGg/aTg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542189	141542189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	249	641	2	ENST00000220592.5:c.2534C>T	p.Ala845Val	p.A845V	ENST00000220592	NM_012154.3	845	gCg/gTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0038085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	82	424	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0038090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	72	399	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	139	635	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	29473987	29473987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	99	682	0	ENST00000389048.3:c.2188G>T	p.Ala730Ser	p.A730S	ENST00000389048	NM_004304.4	730	Gcc/Tcc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135782188	135782189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	82	429	0	ENST00000298552.3:c.1367dup	p.Ser457LysfsTer2	p.S457Kfs*2	ENST00000298552	NM_001162426.1	456	cta/ctTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	57	953	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158617419	158617419	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	33	471	0	ENST00000263640.3:c.1237del	p.Glu413LysfsTer7	p.E413Kfs*7	ENST00000263640	NM_001105.4	413	Gaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112154719	112154719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	89	495	0	ENST00000257430.4:c.990G>A	p.Met330Ile	p.M330I	ENST00000257430	NM_000038.5	330	atG/atA																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	107	403	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486221	8486221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	30	428	0	ENST00000356435.5:c.2596G>C	p.Glu866Gln	p.E866Q	ENST00000356435		866	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	236	667	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027020	71027020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	165	422	0	ENST00000318789.4:c.1307G>A	p.Arg436His	p.R436H	ENST00000318789	NM_032682.5	436	cGc/cAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0038093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	217	551	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438572	52438572	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201844078		P-0038093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	162	425	0	ENST00000460680.1:c.1147C>T	p.Arg383Cys	p.R383C	ENST00000460680	NM_004656.3	383	Cgc/Tgc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942208	17942208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0038093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	77	374	0	ENST00000458235.1:c.2807G>C	p.Gly936Ala	p.G936A	ENST00000458235	NM_000215.3	936	gGc/gCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	115	567	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	90	500	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14038613	14038613	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	31	334	0	ENST00000311895.7:c.1938A>T	p.Arg646Ser	p.R646S	ENST00000311895	NM_005236.2	646	agA/agT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993216	72993216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	138	717	1	ENST00000268489.5:c.829A>G	p.Lys277Glu	p.K277E	ENST00000268489	NM_006885.3	277	Aag/Gag																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933468	49933468	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	47	708	0	ENST00000296474.3:c.2722G>T	p.Glu908Ter	p.E908*	ENST00000296474	NM_002447.2	908	Gag/Tag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658464	117658464	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	40	519	1	ENST00000368508.3:c.5119A>G	p.Ser1707Gly	p.S1707G	ENST00000368508	NM_002944.2	1707	Agc/Ggc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521531	8521531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	40	408	0	ENST00000356435.5:c.707C>G	p.Pro236Arg	p.P236R	ENST00000356435		236	cCa/cGa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120612003	120612004	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	10	24	0	ENST00000256646.2:c.17_18delCC	p.Pro6ArgfsTer27	p.P6Rfs*27	ENST00000256646	NM_024408.3	6	cCC/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	219	710	0	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733461	85733461	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	60	382	0	ENST00000370580.1:c.551A>C	p.Asn184Thr	p.N184T	ENST00000370580	NM_003921.4	184	aAt/aCt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844791	156844798	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GGGATCAA	GGGATCAA	CTC			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	267	655	1	ENST00000524377.1:c.1345_1352delinsCTC	p.Gly449LeufsTer49	p.G449Lfs*49	ENST00000524377	NM_002529.3	449	GGGATCAAc/CTCc																																																																														
RET	5979	MSKCC	GRCh37	10	43609991	43609991	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	99	814	1	ENST00000355710.3:c.1943T>C	p.Val648Ala	p.V648A	ENST00000355710	NM_020975.4	648	gTc/gCc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28919634	28919634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	48	499	0	ENST00000282397.4:c.2303C>A	p.Ala768Asp	p.A768D	ENST00000282397	NM_002019.4	768	gCt/gAt																																																																														
AKT1	207	MSKCC	GRCh37	14	105236683	105236683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	259	677	0	ENST00000349310.3:c.1438G>A	p.Ala480Thr	p.A480T	ENST00000349310	NM_001014432.1	480	Gcc/Acc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16021267	16021267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	42	243	0	ENST00000268712.3:c.1990A>G	p.Asn664Asp	p.N664D	ENST00000268712	NM_006311.3	664	Aac/Gac																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234518	41234518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	66	462	0	ENST00000357654.3:c.4260G>C	p.Gln1420His	p.Q1420H	ENST00000357654	NM_007294.3	1420	caG/caC																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234520	41234520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	198	473	0	ENST00000357654.3:c.4258C>T	p.Gln1420Ter	p.Q1420*	ENST00000357654	NM_007294.3	1420	Cag/Tag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533095	63533095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	78	537	0	ENST00000307078.5:c.1799C>G	p.Pro600Arg	p.P600R	ENST00000307078	NM_004655.3	600	cCc/cGc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680238	30680238	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	103	658	0	ENST00000376406.3:c.1481A>T	p.Asp494Val	p.D494V	ENST00000376406	NM_014641.2	494	gAc/gTc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30682881	30682881	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	73	512	0	ENST00000376406.3:c.72G>C	p.Leu24Phe	p.L24F	ENST00000376406	NM_014641.2	24	ttG/ttC																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527479	157527479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	119	428	0	ENST00000346085.5:c.5204C>G	p.Ala1735Gly	p.A1735G	ENST00000346085	NM_020732.3	1735	gCt/gGt																																																																														
HGF	3082	MSKCC	GRCh37	7	81355277	81355277	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	90	290	0	ENST00000222390.5:c.1097T>C	p.Phe366Ser	p.F366S	ENST00000222390	NM_000601.4	366	tTt/tCt																																																																														
RAD21	5885	MSKCC	GRCh37	8	117869712	117869712	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	38	249	0	ENST00000297338.2:c.482G>T	p.Gly161Val	p.G161V	ENST00000297338	NM_006265.2	161	gGt/gTt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2131780	2131839	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTGCCTCGCTCCAACACAGGTGAGTGGCATGGCGGGCCTTGGCACGGGCTCTGCTCCCA	TCTGCCTCGCTCCAACACAGGTGAGTGGCATGGCGGGCCTTGGCACGGGCTCTGCTCCCA	GCTGCTCCTCCTC			P-0038096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	198	653	0	ENST00000219476.3:c.3795_3814+40delinsGCTGCTCCTCCTC		p.X1265_splice	ENST00000219476	NM_000548.3	1265																																																																															
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	120	721	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	29	401	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11095002	11095002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	107	878	0	ENST00000344626.4:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000344626	NM_003072.3	59	Cag/Tag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713522	30713522	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	44	530	0	ENST00000359013.4:c.922G>T	p.Glu308Ter	p.E308*	ENST00000359013	NM_001024847.2	308	Gag/Tag																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743580	46743580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	71	685	0	ENST00000371975.4:c.1961G>A	p.Arg654His	p.R654H	ENST00000371975	NM_003579.3	654	cGc/cAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602413	10602413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	76	789	2	ENST00000171111.5:c.1165G>A	p.Asp389Asn	p.D389N	ENST00000171111	NM_203500.1	389	Gac/Aac																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29197685	29197685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	85	706	0	ENST00000240100.2:c.509C>T	p.Pro170Leu	p.P170L	ENST00000240100	NM_001394.6	170	cCg/cTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0038101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	198	488	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202743	16202743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	59	406	0	ENST00000375759.3:c.451C>A	p.His151Asn	p.H151N	ENST00000375759	NM_015001.2	151	Cac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	55	437	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27102157	27102158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	49	395	0	ENST00000324856.7:c.5084dup	p.Tyr1696ValfsTer2	p.Y1696Vfs*2	ENST00000324856	NM_006015.4	1695	ctg/cTtg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430879	78430879	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	47	385	1	ENST00000370768.2:c.510del	p.Gly171GlufsTer21	p.G171Efs*21	ENST00000370768	NM_003902.3	170	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717728	89717728	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	99	364	0	ENST00000371953.3:c.753del	p.Asp252IlefsTer4	p.D252Ifs*4	ENST00000371953	NM_000314.4	251	ggT/gg																																																																														
HRAS	3265	MSKCC	GRCh37	11	533881	533881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	83	637	1	ENST00000311189.7:c.175G>A	p.Ala59Thr	p.A59T	ENST00000311189		59	Gcc/Acc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137357	64137357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	73	539	0	ENST00000334205.4:c.1789G>A	p.Val597Ile	p.V597I	ENST00000334205	NM_003942.2	597	Gtc/Atc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	86	615	0	ENST00000227507.2:c.857C>A	p.Thr286Lys	p.T286K	ENST00000227507	NM_053056.2	286	aCa/aAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374507	118374507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	34	323	0	ENST00000534358.1:c.7900C>T	p.Leu2634Phe	p.L2634F	ENST00000534358	NM_005933.3	2634	Ctt/Ttt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434270	49434270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	108	819	0	ENST00000301067.7:c.7283G>A	p.Arg2428Gln	p.R2428Q	ENST00000301067	NM_003482.3	2428	cGg/cAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915180	32915180	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	46	478	0	ENST00000380152.3:c.6688A>T	p.Ile2230Phe	p.I2230F	ENST00000380152		2230	Att/Ttt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346220	89346220	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	15	257	0	ENST00000301030.4:c.6730del	p.Val2244PhefsTer93	p.V2244Ffs*93	ENST00000301030	NM_001256183.1	2244	Gtt/tt																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752444	55752444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	103	702	0	ENST00000284073.2:c.902C>T	p.Ala301Val	p.A301V	ENST00000284073	NM_138962.2	301	gCg/gTg																																																																														
CENPA	1058	MSKCC	GRCh37	2	27016012	27016012	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	49	398	0	ENST00000335756.4:c.289-1G>C		p.X97_splice	ENST00000335756	NM_001809.3	97																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52712520	52712520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	55	393	0	ENST00000394830.3:c.232C>T	p.Arg78Ter	p.R78*	ENST00000394830	NM_018313.4	78	Cga/Tga																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119635014	119635034	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATATACAACTGGAATAGATAG	ATATACAACTGGAATAGATAG	-			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	27	156	0	ENST00000316626.5:c.478-13_485del		p.X160_splice	ENST00000316626		160																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	35	301	2	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	25	222	0	ENST00000263967.3:c.1034A>G	p.Asn345Ser	p.N345S	ENST00000263967	NM_006218.2	345	aAt/aGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637210	176637210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	73	546	0	ENST00000439151.2:c.1810C>G	p.Arg604Gly	p.R604G	ENST00000439151	NM_022455.4	604	Cga/Gga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268090	55268090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	103	698	1	ENST00000275493.2:c.2930G>A	p.Arg977His	p.R977H	ENST00000275493	NM_005228.3	977	cGc/cAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508253	106508253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	42	297	0	ENST00000359195.3:c.247G>A	p.Val83Met	p.V83M	ENST00000359195	NM_002649.2	83	Gtg/Atg																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	37	250	3	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
NBN	4683	MSKCC	GRCh37	8	90993640	90993640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	32	264	0	ENST00000265433.3:c.283del	p.Asp95MetfsTer14	p.D95Mfs*14	ENST00000265433	NM_002485.4	95	Gat/at																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041666	47041666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	100	579	1	ENST00000329236.7:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000329236	NM_001204466.1	553	Gca/Aca																																																																														
BTK	695	MSKCC	GRCh37	X	100629549	100629549	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0038102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	74	452	1	ENST00000308731.7:c.215del	p.Asn72IlefsTer49	p.N72Ifs*49	ENST00000308731	NM_000061.2	72	aAt/at																																																																														
MSH2	4436	MSKCC	GRCh37	2	47657066	47657066	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	17	269	0	ENST00000233146.2:c.1262T>G	p.Leu421Arg	p.L421R	ENST00000233146	NM_000251.2	421	cTg/cGg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	22	763	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	15	975	0	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	35	825	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	13	770	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289107	33289107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	22	699	2	ENST00000374542.5:c.445G>A	p.Ala149Thr	p.A149T	ENST00000374542	NM_001141970.1	149	Gcc/Acc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729687	41729687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	12	540	1	ENST00000242208.4:c.842C>T	p.Ala281Val	p.A281V	ENST00000242208	NM_002192.2	281	gCa/gTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034435	47034435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	14	344	2	ENST00000329236.7:c.289G>A	p.Ala97Thr	p.A97T	ENST00000329236	NM_001204466.1	97	Gcc/Acc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372205	55372205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	10	449	0	ENST00000297316.4:c.895G>A	p.Ala299Thr	p.A299T	ENST00000297316	NM_022454.3	299	Gcg/Acg																																																																														
CIC	23152	MSKCC	GRCh37	19	42799131	42799131	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	48	823	0	ENST00000575354.2:c.4620delC	p.Thr1541LeufsTer79	p.T1541Lfs*79	ENST00000575354	NM_015125.3	1539	Ccc/cc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138614	11138614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	38	519	0	ENST00000344626.4:c.3370C>T	p.Leu1124Phe	p.L1124F	ENST00000344626	NM_003072.3	1124	Ctc/Ttc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	16	526	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																														
AKT2	208	MSKCC	GRCh37	19	40743886	40743886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	16	590	1	ENST00000392038.2:c.821G>A	p.Arg274His	p.R274H	ENST00000392038	NM_001626.4	274	cGc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11189867	11189867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	32	539	1	ENST00000361445.4:c.5642C>T	p.Thr1881Met	p.T1881M	ENST00000361445	NM_004958.3	1881	aCg/aTg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571907	64571907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	36	1048	0	ENST00000337652.1:c.1747C>T	p.Gln583Ter	p.Q583*	ENST00000337652	NM_130803.2	583	Caa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	41991059	41991059	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	16	322	0	ENST00000219905.7:c.2014-2A>G		p.X672_splice	ENST00000219905	NM_001164273.1	672																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15950271	15950271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	40	691	0	ENST00000268712.3:c.6673G>C	p.Asp2225His	p.D2225H	ENST00000268712	NM_006311.3	2225	Gat/Cat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31508827	31508827	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	17	622	0	ENST00000344624.3:c.1488C>G	p.Ser496Arg	p.S496R	ENST00000344624		496	agC/agG																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753013	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			189	10	384	0	ENST00000274289.3:c.1003_1004del	p.Leu335AlafsTer11	p.L335Afs*11	ENST00000274289	NM_006622.3	335	TTg/g																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593301	67593301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	10	330	0	ENST00000274335.5:c.2047G>A	p.Glu683Lys	p.E683K	ENST00000274335		683	Gag/Aag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166736	32166736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	37	873	1	ENST00000375023.3:c.4502G>A	p.Arg1501Gln	p.R1501Q	ENST00000375023	NM_004557.3	1501	cGg/cAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715470	117715470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	25	388	0	ENST00000368508.3:c.1019C>T	p.Ser340Phe	p.S340F	ENST00000368508	NM_002944.2	340	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434247	49434247	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	18	1121	1	ENST00000301067.7:c.7306del	p.Cys2436AlafsTer49	p.C2436Afs*49	ENST00000301067	NM_003482.3	2436	Tgc/gc																																																																														
MED12	9968	MSKCC	GRCh37	X	70352988	70352988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			109	12	309	1	ENST00000374080.3:c.4543C>T	p.Arg1515Ter	p.R1515*	ENST00000374080		1515	Cga/Tga																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800903	120800903	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	24	717	2	ENST00000257552.2:c.345del	p.Leu116CysfsTer3	p.L116Cfs*3	ENST00000257552	NM_002442.3	115	ggG/gg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372513	118372513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	12	563	0	ENST00000534358.1:c.6446G>A	p.Arg2149Gln	p.R2149Q	ENST00000534358	NM_005933.3	2149	cGa/cAa																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2093613	2093613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	25	831	8	ENST00000219066.1:c.664G>A	p.Ala222Thr	p.A222T	ENST00000219066	NM_002528.5	222	Gca/Aca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821944	72821944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	11	589	0	ENST00000268489.5:c.10231G>T	p.Asp3411Tyr	p.D3411Y	ENST00000268489	NM_006885.3	3411	Gac/Tac																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40353767	40353767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	15	571	0	ENST00000293328.3:c.2353G>A	p.Ala785Thr	p.A785T	ENST00000293328	NM_012448.3	785	Gca/Aca																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097089	11097089	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	14	851	5	ENST00000344626.4:c.580C>T	p.Gln194Ter	p.Q194*	ENST00000344626	NM_003072.3	194	Cag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123752	11123752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	16	600	0	ENST00000344626.4:c.2402G>A	p.Arg801His	p.R801H	ENST00000344626	NM_003072.3	801	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211774	36211774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	22	869	0	ENST00000222270.7:c.1525G>A	p.Asp509Asn	p.D509N	ENST00000222270	NM_014727.1	509	Gac/Aac																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662038	227662038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	29	655	0	ENST00000305123.5:c.1417C>T	p.Pro473Ser	p.P473S	ENST00000305123	NM_005544.2	473	Ccc/Tcc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022331	31022331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	17	385	2	ENST00000375687.4:c.1816C>T	p.Arg606Trp	p.R606W	ENST00000375687	NM_015338.5	606	Cgg/Tgg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053520	37053520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	14	594	0	ENST00000231790.2:c.607G>A	p.Asp203Asn	p.D203N	ENST00000231790	NM_000249.3	203	Gat/Aat																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588122	67588122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	12	344	0	ENST00000274335.5:c.952G>A	p.Ala318Thr	p.A318T	ENST00000274335		318	Gcc/Acc																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137525584	137525584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	15	588	0	ENST00000367739.4:c.431A>G	p.Asp144Gly	p.D144G	ENST00000367739	NM_000416.2	144	gAc/gGc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391869	139391869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	11	861	1	ENST00000277541.6:c.6322G>A	p.Asp2108Asn	p.D2108N	ENST00000277541	NM_017617.3	2108	Gac/Aac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225148	53225148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			146	11	380	1	ENST00000375401.3:c.3070G>A	p.Glu1024Lys	p.E1024K	ENST00000375401	NM_004187.3	1024	Gag/Aag																																																																														
BTK	695	MSKCC	GRCh37	X	100617586	100617587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	11	344	0	ENST00000308731.7:c.482dup	p.Asn161LysfsTer33	p.N161Kfs*33	ENST00000308731	NM_000061.2	161	aat/aaAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	85	114	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0037725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	224	495	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	191	506	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	100	325	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	59	246	0	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
BTK	695	MSKCC	GRCh37	X	100624988	100624988	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	63	152	2	ENST00000308731.7:c.389del	p.Asn130ThrfsTer2	p.N130Tfs*2	ENST00000308731	NM_000061.2	130	aAc/ac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	85	434	1	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	51	202	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	13	92	1	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	83	300	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	37	354	0	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111921737	111921737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	77	221	0	ENST00000393256.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000393256	NM_006538.4	176	Gaa/Aaa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461543	138461543	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	100	332	1	ENST00000289153.2:c.478del	p.Ile160SerfsTer13	p.I160Sfs*13	ENST00000289153	NM_006219.2	160	Atc/tc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	47	294	0	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	79	417	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	93	323	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	61	505	5	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	33	305	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	13	58	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14026116	14026116	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	21	178	0	ENST00000311895.7:c.1081delA	p.Met361TrpfsTer15	p.M361Wfs*15	ENST00000311895	NM_005236.2	359	gAa/ga																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140870	37140870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	44	391	0	ENST00000373509.5:c.706G>A	p.Val236Met	p.V236M	ENST00000373509	NM_002648.3	236	Gtg/Atg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910684	29910684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	130	835	0	ENST00000376809.5:c.224G>A	p.Trp75Ter	p.W75*	ENST00000376809	NM_002116.7	75	tGg/tAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	82	598	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	216	439	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23539104	23539104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	72	367	0	ENST00000380871.4:c.335C>T	p.Ala112Val	p.A112V	ENST00000380871	NM_006167.3	112	gCc/gTc																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56811497	56811497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	80	258	0	ENST00000337432.4:c.1045A>G	p.Thr349Ala	p.T349A	ENST00000337432	NM_058216.2	349	Act/Gct																																																																														
MED12	9968	MSKCC	GRCh37	X	70352784	70352784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	124	253	0	ENST00000374080.3:c.4505C>T	p.Ser1502Phe	p.S1502F	ENST00000374080		1502	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	213	507	3	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412647	63412648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	84	221	0	ENST00000330258.3:c.519dupT	p.Ser174Ter	p.S174*	ENST00000330258	NM_152424.3	173	-/T																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883774	37883774	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	132	627	2	ENST00000269571.5:c.3391delC	p.Leu1131Ter	p.L1131*	ENST00000269571		1129	gCc/gc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324596	31324596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	69	401	1	ENST00000412585.2:c.212C>A	p.Pro71Gln	p.P71Q	ENST00000412585	NM_005514.6	71	cCg/cAg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	83	697	1	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322882	31322882	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	51	419	0	ENST00000412585.2:c.1012+2T>C		p.X338_splice	ENST00000412585	NM_005514.6	338																																																																															
CTCF	10664	MSKCC	GRCh37	16	67654615	67654615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	81	281	0	ENST00000264010.4:c.1102C>T	p.Arg368Cys	p.R368C	ENST00000264010	NM_006565.3	368	Cgt/Tgt																																																																														
TP63	8626	MSKCC	GRCh37	3	189526271	189526271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	86	329	3	ENST00000264731.3:c.535G>A	p.Val179Met	p.V179M	ENST00000264731	NM_003722.4	179	Gtg/Atg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347111	347111	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	148	604	0	ENST00000262320.3:c.1900C>T	p.Gln634Ter	p.Q634*	ENST00000262320	NM_003502.3	634	Cag/Tag																																																																														
KIT	3815	MSKCC	GRCh37	4	55594228	55594228	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	55	259	0	ENST00000288135.5:c.1931T>C	p.Leu644Pro	p.L644P	ENST00000288135	NM_000222.2	644	cTg/cCg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118901	70118901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	139	550	0	ENST00000245479.2:c.473C>T	p.Ala158Val	p.A158V	ENST00000245479	NM_000346.3	158	gCg/gTg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784041	9784041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	106	486	0	ENST00000377346.4:c.2609G>A	p.Arg870Gln	p.R870Q	ENST00000377346	NM_005026.3	870	cGa/cAa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46736401	46736401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	84	356	0	ENST00000371975.4:c.1113G>T	p.Glu371Asp	p.E371D	ENST00000371975	NM_003579.3	371	gaG/gaT																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980427	201980427	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	96	462	0	ENST00000359651.3:c.163G>T	p.Glu55Ter	p.E55*	ENST00000359651		55	Gag/Tag																																																																														
PARP1	142	MSKCC	GRCh37	1	226567709	226567709	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	21	415	0	ENST00000366794.5:c.1457A>C	p.Lys486Thr	p.K486T	ENST00000366794	NM_001618.3	486	aAg/aCg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88659802	88659802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	77	296	0	ENST00000372037.3:c.449G>A	p.Ser150Asn	p.S150N	ENST00000372037	NM_004329.2	150	aGc/aAc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14317322	14317322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	74	257	2	ENST00000256196.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000256196		63	cGg/cAg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741603	17741603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	25	338	0	ENST00000250003.3:c.274C>T	p.Arg92Cys	p.R92C	ENST00000250003	NM_002478.4	92	Cgc/Tgc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200258	67200258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	48	497	0	ENST00000312629.5:c.566G>A	p.Gly189Asp	p.G189D	ENST00000312629	NM_003952.2	189	gGc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433980	49433980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	131	596	0	ENST00000301067.7:c.7573G>T	p.Gly2525Cys	p.G2525C	ENST00000301067	NM_003482.3	2525	Ggt/Tgt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779515	3779515	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	155	721	0	ENST00000262367.5:c.5533A>G	p.Asn1845Asp	p.N1845D	ENST00000262367	NM_004380.2	1845	Aac/Gac																																																																														
NUP93	9688	MSKCC	GRCh37	16	56852610	56852610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	89	343	0	ENST00000308159.5:c.524G>A	p.Arg175Gln	p.R175Q	ENST00000308159	NM_014669.4	175	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829269	72829269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200921039		P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	55	527	0	ENST00000268489.5:c.7312G>A	p.Ala2438Thr	p.A2438T	ENST00000268489	NM_006885.3	2438	Gca/Aca																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217646	7217647	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	67	310	0	ENST00000380728.2:c.280_281del	p.Leu94ThrfsTer2	p.L94Tfs*2	ENST00000380728		94	TTa/a																																																																														
CDK12	51755	MSKCC	GRCh37	17	37676297	37676297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	119	400	0	ENST00000447079.4:c.3052G>A	p.Asp1018Asn	p.D1018N	ENST00000447079	NM_015083.1	1018	Gac/Aac																																																																														
STAT3	6774	MSKCC	GRCh37	17	40477012	40477012	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	75	414	0	ENST00000264657.5:c.1433T>G	p.Leu478Arg	p.L478R	ENST00000264657	NM_139276.2	478	cTg/cGg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41228547	41228547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	110	413	0	ENST00000357654.3:c.4442C>T	p.Ala1481Val	p.A1481V	ENST00000357654	NM_007294.3	1481	gCa/gTa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246874	41246874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	45	197	0	ENST00000357654.3:c.674C>T	p.Ala225Val	p.A225V	ENST00000357654	NM_007294.3	225	gCt/gTt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211194	2211194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	114	584	0	ENST00000398665.3:c.1448C>T	p.Ala483Val	p.A483V	ENST00000398665	NM_032482.2	483	gCg/gTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291625	15291625	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	113	624	0	ENST00000263388.2:c.3009G>A	p.Trp1003Ter	p.W1003*	ENST00000263388	NM_000435.2	1003	tgG/tgA																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943697	17943697	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	118	535	0	ENST00000458235.1:c.2392C>G	p.Pro798Ala	p.P798A	ENST00000458235	NM_000215.3	798	Cct/Gct																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279544	18279544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	87	442	2	ENST00000222254.8:c.1817C>T	p.Ala606Val	p.A606V	ENST00000222254	NM_005027.3	606	gCa/gTa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905567	50905567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	125	639	0	ENST00000440232.2:c.695G>T	p.Arg232Leu	p.R232L	ENST00000440232	NM_002691.3	232	cGt/cTt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026161	48026161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	49	251	0	ENST00000234420.5:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000234420	NM_000179.2	347	Gaa/Aaa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99180068	99180068	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	93	445	0	ENST00000074304.5:c.2011C>T	p.Gln671Ter	p.Q671*	ENST00000074304	NM_001134224.1	671	Cag/Tag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182583	99182583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	45	375	0	ENST00000074304.5:c.2386C>T	p.Pro796Ser	p.P796S	ENST00000074304	NM_001134224.1	796	Ccc/Tcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790170	40790170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	73	289	0	ENST00000373198.4:c.2561G>A	p.Arg854His	p.R854H	ENST00000373198	NM_133170.3	854	cGc/cAc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713309	30713309	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	63	279	0	ENST00000359013.4:c.709T>C	p.Phe237Leu	p.F237L	ENST00000359013	NM_001024847.2	237	Ttc/Ctc																																																																														
TET2	54790	MSKCC	GRCh37	4	106196325	106196325	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	20	163	0	ENST00000380013.4:c.4658A>G	p.Gln1553Arg	p.Q1553R	ENST00000380013	NM_001127208.2	1553	cAg/cGg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627885	187627885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	130	489	1	ENST00000441802.2:c.3097G>A	p.Val1033Met	p.V1033M	ENST00000441802	NM_005245.3	1033	Gtg/Atg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202370	138202370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	55	477	0	ENST00000237289.4:c.2287C>T	p.Arg763Trp	p.R763W	ENST00000237289	NM_001270507.1	763	Cgg/Tgg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205354	38205356	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	123	559	0	ENST00000317025.8:c.334_336del	p.Tyr112del	p.Y112del	ENST00000317025	NM_023034.1	112	TAT/-																																																																														
AGO2	27161	MSKCC	GRCh37	8	141551418	141551418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	86	491	1	ENST00000220592.5:c.1879G>A	p.Ala627Thr	p.A627T	ENST00000220592	NM_012154.3	627	Gcc/Acc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741463	145741463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	159	636	1	ENST00000428558.2:c.1040G>A	p.Arg347His	p.R347H	ENST00000428558	NM_004260.3	347	cGc/cAc																																																																														
AR	367	MSKCC	GRCh37	X	66765110	66765111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	79	252	0	ENST00000374690.3:c.125dup	p.Glu43ArgfsTer41	p.E43Rfs*41	ENST00000374690	NM_000044.3	41	cac/caCc																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0038036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	75	305	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	215	916	0	ENST00000269305.4:c.489C>A	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taA																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0038036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	72	581	1	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
ATR	545	MSKCC	GRCh37	3	142277482	142277482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	17	291	0	ENST00000350721.4:c.1869G>C	p.Arg623Ser	p.R623S	ENST00000350721	NM_001184.3	623	agG/agC																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467845	66467845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	15	324	0	ENST00000273854.3:c.424G>A	p.Gly142Arg	p.G142R	ENST00000273854	NM_004439.5	142	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	161	823	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	33	265	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	69	294	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	59	370	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112173995	112173995	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	59	329	0	ENST00000257430.4:c.2704G>T	p.Glu902Ter	p.E902*	ENST00000257430	NM_000038.5	902	Gaa/Taa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374935	45374935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	167	467	0	ENST00000262160.6:c.908C>G	p.Thr303Arg	p.T303R	ENST00000262160	NM_005901.5	303	aCa/aGa																																																																														
APC	324	MSKCC	GRCh37	5	112102044	112102044	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	28	279	0	ENST00000257430.4:c.158del	p.Gly53GlufsTer17	p.G53Efs*17	ENST00000257430	NM_000038.5	53	Gga/ga																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482804	67482804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	82	654	0	ENST00000327367.4:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000327367	NM_005902.3	403	cCt/cTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274171	10274171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	99	562	0	ENST00000330684.3:c.98C>T	p.Ala33Val	p.A33V	ENST00000330684	NM_001134407.1	33	gCg/gTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11177076	11177076	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0038044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	51	430	0	ENST00000361445.4:c.7001del	p.Leu2334Ter	p.L2334*	ENST00000361445	NM_004958.3	2334	tTa/ta																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935714	13935716	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGA	TGA	-			P-0038044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	116	393	0	ENST00000405192.2:c.1144-4_1144-2del		p.X382_splice	ENST00000405192	NM_001163147.1	382																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	29	521	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	24	341	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	19	392	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370985	55370985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0038045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	61	646	0	ENST00000297316.4:c.287C>G	p.Ala96Gly	p.A96G	ENST00000297316	NM_022454.3	96	gCc/gGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106766	27106766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	95	730	0	ENST00000324856.7:c.6377G>A	p.Ser2126Asn	p.S2126N	ENST00000324856	NM_006015.4	2126	aGc/aAc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380348	14380349	+	missense_variant	Missense_Mutation	DNP	GC	GC	TA			P-0038045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	21	239	1	ENST00000256196.4:c.68_69delinsTA	p.Gly23Val	p.G23V	ENST00000256196		23	gGC/gTA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3820749	3820749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	73	1071	0	ENST00000262367.5:c.2702C>T	p.Pro901Leu	p.P901L	ENST00000262367	NM_004380.2	901	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0038046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	15	633	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0038046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	40	406	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TET2	54790	MSKCC	GRCh37	4	106197273	106197273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	56	248	0	ENST00000380013.4:c.5606G>T	p.Gly1869Val	p.G1869V	ENST00000380013	NM_001127208.2	1869	gGg/gTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133245229	133245229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	19	686	2	ENST00000320574.5:c.2018G>A	p.Gly673Asp	p.G673D	ENST00000320574	NM_006231.2	673	gGc/gAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047247	180047247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	34	749	0	ENST00000261937.6:c.2468C>T	p.Pro823Leu	p.P823L	ENST00000261937	NM_182925.4	823	cCt/cTt																																																																														
STK19	8859	MSKCC	GRCh37	6	31940109	31940109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0038046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	52	618	0	ENST00000375331.2:c.251G>T	p.Cys84Phe	p.C84F	ENST00000375331	NM_004197.1	84	tGc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55225418	55225418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	32	373	0	ENST00000275493.2:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000275493	NM_005228.3	424	Gaa/Aaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420219	88420219	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	269	495	0	ENST00000360948.2:c.2467A>G	p.Ile823Val	p.I823V	ENST00000360948	NM_001012338.2	823	Atc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0038047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	548	753	1	ENST00000269305.4:c.657delC	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155262	55155262	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0038047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	124	519	0	ENST00000257290.5:c.2861T>G	p.Leu954Arg	p.L954R	ENST00000257290	NM_006206.4	954	cTg/cGg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637338	176637361	+	inframe_deletion	In_Frame_Del	DEL	CAGTGACCTGGATCCCATAGAACA	CAGTGACCTGGATCCCATAGAACA	-			P-0038047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	31	666	0	ENST00000439151.2:c.1941_1964del	p.Asp648_Ser655del	p.D648_S655del	ENST00000439151	NM_022455.4	646	agCAGTGACCTGGATCCCATAGAACAc/agc																																																																														
PAX5	5079	MSKCC	GRCh37	9	36840557	36840557	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0038047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	186	912	0	ENST00000358127.4:c.1176A>T	p.Ter392CysextTer111	p.*392Cext*111	ENST00000358127	NM_001280556.1	392	tgA/tgT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0038052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	71	463	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0038052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	86	570	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593417	48593417	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0038052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	80	458	0	ENST00000342988.3:c.1168G>T	p.Glu390Ter	p.E390*	ENST00000342988	NM_005359.5	390	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0038052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	129	752	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	93	614	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0038052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	93	614	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691809	30691809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	42	592	0	ENST00000359013.4:c.386C>T	p.Pro129Leu	p.P129L	ENST00000359013	NM_001024847.2	129	cCc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			765	119	439	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ATM	472	MSKCC	GRCh37	11	108114773	108114773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			972	239	581	0	ENST00000278616.4:c.590G>A	p.Gly197Glu	p.G197E	ENST00000278616	NM_000051.3	197	gGa/gAa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26974649	26974649	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			798	48	641	0	ENST00000381527.3:c.993G>C	p.Gln331His	p.Q331H	ENST00000381527	NM_001260.1	331	caG/caC																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614539	38614539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			910	159	671	0	ENST00000299084.4:c.305C>T	p.Thr102Met	p.T102M	ENST00000299084	NM_152594.2	102	aCg/aTg																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180417	38180417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	72	873	0	ENST00000396334.3:c.265G>A	p.Asp89Asn	p.D89N	ENST00000396334	NM_002468.4	89	Gac/Aac																																																																														
PARK2	5071	MSKCC	GRCh37	6	161781232	161781232	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			720	48	658	0	ENST00000366898.1:c.1173C>A	p.Tyr391Ter	p.Y391*	ENST00000366898	NM_004562.2	391	taC/taA																																																																														
TEK	7010	MSKCC	GRCh37	9	27197411	27197411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	103	746	0	ENST00000380036.4:c.1723T>C	p.Tyr575His	p.Y575H	ENST00000380036	NM_000459.3	575	Tat/Cat																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87636315	87636315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033735-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			802	53	750	1	ENST00000277120.3:c.2480C>T	p.Ala827Val	p.A827V	ENST00000277120		827	gCc/gTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0037870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	99	503	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	56	539	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78831603	78831603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	67	451	1	ENST00000306801.3:c.1412G>T	p.Gly471Val	p.G471V	ENST00000306801	NM_020761.2	471	gGc/gTc																																																																														
AKT1	207	MSKCC	GRCh37	14	105243048	105243048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	351	838	1	ENST00000349310.3:c.235C>A	p.Gln79Lys	p.Q79K	ENST00000349310	NM_001014432.1	79	Cag/Aag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217230	11217230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	123	525	0	ENST00000361445.4:c.4448G>A	p.Cys1483Tyr	p.C1483Y	ENST00000361445	NM_004958.3	1483	tGc/tAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445246	49445250	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCT	CCCCT	-			P-0037871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	194	906	0	ENST00000301067.7:c.2216_2220del	p.Glu739AlafsTer8	p.E739Afs*8	ENST00000301067	NM_003482.3	739	gAGGGG/g																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640279	3640279	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	192	945	1	ENST00000294008.3:c.3360A>C	p.Lys1120Asn	p.K1120N	ENST00000294008	NM_032444.2	1120	aaA/aaC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829212	72829212	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	176	689	0	ENST00000268489.5:c.7369del	p.Gln2457LysfsTer71	p.Q2457Kfs*71	ENST00000268489	NM_006885.3	2457	Caa/aa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37876033	37876048	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGCAGCTGTGTGGA	CCTGCAGCTGTGTGGA	-			P-0037872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	426	434	0	ENST00000269571.5:c.1899-3_1911del		p.X633_splice	ENST00000269571		633																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56177699	56177699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	141	218	0	ENST00000399503.3:c.2672A>G	p.Asn891Ser	p.N891S	ENST00000399503	NM_005921.1	891	aAc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	117	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	193	473	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	167	246	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646335	3646335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	289	721	0	ENST00000294008.3:c.1743G>T	p.Glu581Asp	p.E581D	ENST00000294008	NM_032444.2	581	gaG/gaT																																																																														
IDH1	3417	MSKCC	GRCh37	2	209116189	209116189	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	57	288	0	ENST00000345146.2:c.87A>T	p.Lys29Asn	p.K29N	ENST00000345146	NM_005896.2	29	aaA/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112154842	112154842	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	101	357	0	ENST00000257430.4:c.1115del	p.Asn372IlefsTer82	p.N372Ifs*82	ENST00000257430	NM_000038.5	371	ggA/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	40	302	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0037886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	38	388	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711883	89711884	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0037886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	15	342	0	ENST00000371953.3:c.502_503delAT	p.Ile168SerfsTer11	p.I168Sfs*11	ENST00000371953	NM_000314.4	167	acTAtt/actt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	35	331	0	ENST00000349496.5:c.1161T>A	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692886	89692886	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	75	273	0	ENST00000371953.3:c.370T>G	p.Cys124Gly	p.C124G	ENST00000371953	NM_000314.4	124	Tgt/Ggt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262102	10262102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	57	471	0	ENST00000340748.4:c.2189G>T	p.Arg730Leu	p.R730L	ENST00000340748		730	cGc/cTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860532	45860532	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	368	767	0	ENST00000391945.4:c.1475C>G	p.Pro492Arg	p.P492R	ENST00000391945	NM_000400.3	492	cCt/cGt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11292504	11292504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	63	466	0	ENST00000361445.4:c.2503G>T	p.Ala835Ser	p.A835S	ENST00000361445	NM_004958.3	835	Gcc/Tcc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498766	246498766	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	82	523	1	ENST00000388985.4:c.239G>A	p.Trp80Ter	p.W80*	ENST00000388985		80	tGg/tAg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114197	115114198	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	228	738	1	ENST00000257566.3:c.1019_1020delinsAA	p.Ser340Ter	p.S340*	ENST00000257566	NM_016569.3	340	tCC/tAA																																																																														
POLE	5426	MSKCC	GRCh37	12	133256598	133256598	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	185	577	1	ENST00000320574.5:c.365A>T	p.Lys122Met	p.K122M	ENST00000320574	NM_006231.2	122	aAg/aTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32937579	32937579	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	185	619	0	ENST00000380152.3:c.8240T>A	p.Val2747Asp	p.V2747D	ENST00000380152		2747	gTt/gAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781368	3781368	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	146	957	0	ENST00000262367.5:c.4997C>G	p.Ala1666Gly	p.A1666G	ENST00000262367	NM_004380.2	1666	gCc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578404	+	missense_variant	Missense_Mutation	DNP	CA	CA	AC			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	219	813	0	ENST00000269305.4:c.526_527delinsGT	p.Cys176Val	p.C176V	ENST00000269305	NM_001126112.2	176	TGc/GTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29557319	29557320	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	54	331	0	ENST00000358273.4:c.3037dup	p.Thr1013AsnfsTer8	p.T1013Nfs*8	ENST00000358273	NM_001042492.2	1011	ata/atAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29683525	29683525	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	57	369	0	ENST00000358273.4:c.7663A>T	p.Lys2555Ter	p.K2555*	ENST00000358273	NM_001042492.2	2555	Aaa/Taa																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735634	204735634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	139	464	0	ENST00000302823.3:c.435C>G	p.Asn145Lys	p.N145K	ENST00000302823	NM_005214.4	145	aaC/aaG																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483916	212483916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	60	528	0	ENST00000342788.4:c.2287G>A	p.Val763Met	p.V763M	ENST00000342788	NM_005235.2	763	Gtg/Atg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39721121	39721121	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	85	482	0	ENST00000361337.2:c.624A>T	p.Glu208Asp	p.E208D	ENST00000361337	NM_003286.2	208	gaA/gaT																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143033764	143033764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	204	441	0	ENST00000262992.4:c.2207G>T	p.Gly736Val	p.G736V	ENST00000262992	NM_001101669.1	736	gGa/gTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540425	187540425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	157	478	0	ENST00000441802.2:c.7315G>T	p.Val2439Phe	p.V2439F	ENST00000441802	NM_005245.3	2439	Gtc/Ttc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542306	187542307	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	146	403	0	ENST00000441802.2:c.5433dup	p.Val1812CysfsTer2	p.V1812Cfs*2	ENST00000441802	NM_005245.3	1811	-/T																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120648	94120648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	89	447	0	ENST00000369303.4:c.403G>C	p.Gly135Arg	p.G135R	ENST00000369303	NM_004440.3	135	Ggc/Cgc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332890	152332890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	63	454	0	ENST00000206249.3:c.1196C>A	p.Pro399Gln	p.P399Q	ENST00000206249	NM_000125.3	399	cCa/cAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50358686	50358686	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	97	261	0	ENST00000331340.3:c.31del	p.Gln11LysfsTer10	p.Q11Kfs*10	ENST00000331340	NM_006060.4	10	tCc/tc																																																																														
HGF	3082	MSKCC	GRCh37	7	81350081	81350081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	130	406	0	ENST00000222390.5:c.1251G>T	p.Lys417Asn	p.K417N	ENST00000222390	NM_000601.4	417	aaG/aaT																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	153	392	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945134	151945134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	18	422	0	ENST00000262189.6:c.2385C>A	p.Asp795Glu	p.D795E	ENST00000262189	NM_170606.2	795	gaC/gaA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507429	8507429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	176	290	0	ENST00000356435.5:c.1549G>T	p.Gly517Trp	p.G517W	ENST00000356435		517	Ggg/Tgg																																																																														
AR	367	MSKCC	GRCh37	X	66765413	66765413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	120	901	0	ENST00000374690.3:c.425G>A	p.Ser142Asn	p.S142N	ENST00000374690	NM_000044.3	142	aGc/aAc																																																																														
AR	367	MSKCC	GRCh37	X	66765802	66765802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	298	1138	0	ENST00000374690.3:c.814C>A	p.Leu272Ile	p.L272I	ENST00000374690	NM_000044.3	272	Ctt/Att																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154432	2154432	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	115	903	1	ENST00000434045.2:c.496del	p.Val166TrpfsTer49	p.V166Wfs*49	ENST00000434045	NM_001127598.1	166	Gtg/tg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004224-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			138	112	167	0				ENST00000310581	NM_198253.2																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11123705	11123705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004224-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	579	665	0	ENST00000344626.4:c.2355G>C	p.Lys785Asn	p.K785N	ENST00000344626	NM_003072.3	785	aaG/aaC																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0004224-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			57	401	437	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
AR	367	MSKCC	GRCh37	X	66766450	66766450	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004224-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			23	235	164	0	ENST00000374690.3:c.1462C>T	p.Gln488Ter	p.Q488*	ENST00000374690	NM_000044.3	488	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004224-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			101	614	656	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004224-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			144	280	307	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911098	32911098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004224-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			113	95	420	0	ENST00000380152.3:c.2606C>T	p.Ser869Leu	p.S869L	ENST00000380152		869	tCa/tTa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949038	44949038	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004224-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			25	418	296	0	ENST00000377967.4:c.3599T>G	p.Leu1200Arg	p.L1200R	ENST00000377967	NM_021140.2	1200	cTt/cGt																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784035	120784035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004224-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			992	311	728	0	ENST00000257552.2:c.950C>G	p.Ala317Gly	p.A317G	ENST00000257552	NM_002442.3	317	gCc/gGc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256685	19256685	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004224-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	183	511	0	ENST00000162023.5:c.1028T>G	p.Leu343Arg	p.L343R	ENST00000162023		343	cTc/cGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034493	47034493	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0004224-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			41	10	314	0	ENST00000329236.7:c.345+2T>A		p.X115_splice	ENST00000329236	NM_001204466.1	115																																																																															
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0032130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	102	1040	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129355	64129355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	46	838	1	ENST00000334205.4:c.787C>T	p.Pro263Ser	p.P263S	ENST00000334205	NM_003942.2	263	Cct/Tct																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244008	46244008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			79	23	590	0	ENST00000334344.6:c.2102C>T	p.Thr701Ile	p.T701I	ENST00000334344	NM_152641.2	701	aCt/aTt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355153	15355494	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGAAGTGGCCGATGGGGTCAAAGACGCTGCCTGGGAGCTGGGGCTCCAGGACGGGCACCTGGGTGGCAATGAAGGGTGGGGGCGAGGACTTCATCGCCGGGGCTGCCTGCTGCGGCATGGAGGGTGGGGGAGGCGGGGGTGGCGGCTGCTGTTGCTGCTGCGGAGGTGGAGGCGGTGGGGGCTGCTGGGGAGGCGGGGGCGGCTGCTGGGGCACAGGAGCCGGGGCCTGCTGCATCTGCTGATGGTGGTGATGATGGTGCTGCAGACAGAGAGACAGACAGACAGACAGGCTGATGTCAGGCAGGCAGAACTGGCCCGGGCCAGACCCAACGTCCCACCTAA	TGAAGTGGCCGATGGGGTCAAAGACGCTGCCTGGGAGCTGGGGCTCCAGGACGGGCACCTGGGTGGCAATGAAGGGTGGGGGCGAGGACTTCATCGCCGGGGCTGCCTGCTGCGGCATGGAGGGTGGGGGAGGCGGGGGTGGCGGCTGCTGTTGCTGCTGCGGAGGTGGAGGCGGTGGGGGCTGCTGGGGAGGCGGGGGCGGCTGCTGGGGCACAGGAGCCGGGGCCTGCTGCATCTGCTGATGGTGGTGATGATGGTGCTGCAGACAGAGAGACAGACAGACAGACAGGCTGATGTCAGGCAGGCAGAACTGGCCCGGGCCAGACCCAACGTCCCACCTAA	-			P-0032130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	67	850	0	ENST00000263377.2:c.2211+27_2470del		p.X737_splice	ENST00000263377	NM_058243.2	737																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66213846	66213846	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			83	38	553	1	ENST00000273854.3:c.2584T>C	p.Trp862Arg	p.W862R	ENST00000273854	NM_004439.5	862	Tgg/Cgg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342621	87342644	+	inframe_deletion	In_Frame_Del	DEL	CATTCCATTCACTGTGAAAGGCAA	CATTCCATTCACTGTGAAAGGCAA	-			P-0032130-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	22	548	0	ENST00000277120.3:c.907_930del	p.Ile303_Asn310del	p.I303_N310del	ENST00000277120		302	tgCATTCCATTCACTGTGAAAGGCAAc/tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035733-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			917	234	601	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035733-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			858	108	709	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041657	47041657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035733-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	201	401	2	ENST00000329236.7:c.1648G>T	p.Glu550Ter	p.E550*	ENST00000329236	NM_001204466.1	550	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971090	21971090	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035733-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	32	459	0	ENST00000304494.5:c.268T>A	p.Phe90Ile	p.F90I	ENST00000304494	NM_000077.4	90	Ttc/Atc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971090	21971090	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035733-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	32	459	0	ENST00000304494.5:c.268T>A	p.Phe90Ile	p.F90I	ENST00000304494	NM_000077.4	90	Ttc/Atc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971090	21971090	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035733-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	32	459	0	ENST00000304494.5:c.268T>A	p.Phe90Ile	p.F90I	ENST00000304494	NM_000077.4	90	Ttc/Atc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	168	424	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
RB1	5925	MSKCC	GRCh37	13	48916766	48916766	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	96	223	0	ENST00000267163.4:c.299del	p.Gly100GlufsTer11	p.G100Efs*11	ENST00000267163	NM_000321.2	99	tGg/tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578539	7578539	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	1212	482	1	ENST00000269305.4:c.391A>T	p.Asn131Tyr	p.N131Y	ENST00000269305	NM_001126112.2	131	Aac/Tac																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021741	69021741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	242	297	0	ENST00000288368.4:c.3029G>T	p.Gly1010Val	p.G1010V	ENST00000288368	NM_024870.2	1010	gGt/gTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781470	3781475	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AAGACC	AAGACC	-			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	185	178	0	ENST00000262367.5:c.4891-1_4895del		p.X1631_splice	ENST00000262367	NM_004380.2	1631																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89348782	89348782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	664	621	0	ENST00000301030.4:c.4168G>C	p.Gly1390Arg	p.G1390R	ENST00000301030	NM_001256183.1	1390	Ggc/Cgc																																																																														
ALK	238	MSKCC	GRCh37	2	29498285	29498285	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	269	306	0	ENST00000389048.3:c.1895T>C	p.Leu632Pro	p.L632P	ENST00000389048	NM_004304.4	632	cTg/cCg																																																																														
EP300	2033	MSKCC	GRCh37	22	41573689	41573689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	427	367	0	ENST00000263253.7:c.5974C>A	p.Gln1992Lys	p.Q1992K	ENST00000263253	NM_001429.3	1992	Cag/Aag																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73108249	73108249	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	55	107	0	ENST00000356692.5:c.350del	p.Gly117GlufsTer9	p.G117Efs*9	ENST00000356692		117	Gga/ga																																																																														
KDR	3791	MSKCC	GRCh37	4	55963933	55963933	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	157	202	0	ENST00000263923.4:c.2510del	p.Gly837ValfsTer12	p.G837Vfs*12	ENST00000263923	NM_002253.2	837	gGt/gt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143094859	143094859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	235	347	0	ENST00000262992.4:c.1285G>A	p.Asp429Asn	p.D429N	ENST00000262992	NM_001101669.1	429	Gac/Aac																																																																														
IRF4	3662	MSKCC	GRCh37	6	395864	395864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	317	304	0	ENST00000380956.4:c.421C>A	p.Leu141Met	p.L141M	ENST00000380956	NM_001195286.1	141	Ctg/Atg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739869	41739869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	213	237	0	ENST00000242208.4:c.104G>T	p.Cys35Phe	p.C35F	ENST00000242208	NM_002192.2	35	tGt/tTt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50459532	50459532	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	109	141	0	ENST00000331340.3:c.821G>T	p.Arg274Leu	p.R274L	ENST00000331340	NM_006060.4	274	cGt/cTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046350	69046350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	272	334	0	ENST00000288368.4:c.3823G>C	p.Val1275Leu	p.V1275L	ENST00000288368	NM_024870.2	1275	Gtc/Ctc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410338	63410338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	314	509	0	ENST00000330258.3:c.2829C>A	p.Asp943Glu	p.D943E	ENST00000330258	NM_152424.3	943	gaC/gaA																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411529	63411529	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	351	503	0	ENST00000330258.3:c.1638G>C	p.Leu546Phe	p.L546F	ENST00000330258	NM_152424.3	546	ttG/ttC																																																																														
ATRX	546	MSKCC	GRCh37	X	76829817	76829817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	75	273	0	ENST00000373344.5:c.6224G>T	p.Gly2075Val	p.G2075V	ENST00000373344	NM_000489.3	2075	gGg/gTg																																																																														
BTK	695	MSKCC	GRCh37	X	100626659	100626659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	266	266	0	ENST00000308731.7:c.271C>A	p.Gln91Lys	p.Q91K	ENST00000308731	NM_000061.2	91	Caa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	21	197	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	43	262	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028657	12028657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	48	298	0	ENST00000353533.5:c.860G>A	p.Arg287His	p.R287H	ENST00000353533	NM_003010.3	287	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	28	226	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979448	2979448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	61	445	0	ENST00000396946.4:c.799C>A	p.Leu267Met	p.L267M	ENST00000396946	NM_032415.4	267	Ctg/Atg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845433	156845433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	60	605	0	ENST00000524377.1:c.1476G>T	p.Glu492Asp	p.E492D	ENST00000524377	NM_002529.3	492	gaG/gaT																																																																														
ALK	238	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	88	396	0	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86686647	86686647	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	11	169	0	ENST00000274376.6:c.3091G>T	p.Glu1031Ter	p.E1031*	ENST00000274376	NM_002890.2	1031	Gaa/Taa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224793	123224793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	13	162	0	ENST00000218089.9:c.3557G>A	p.Arg1186Gln	p.R1186Q	ENST00000218089	NM_001042749.1	1186	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	84	422	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	112	387	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919203	178919203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	10	166	0	ENST00000263967.3:c.688C>T	p.Arg230Ter	p.R230*	ENST00000263967	NM_006218.2	230	Cga/Tga																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12013719	12013719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	40	168	0	ENST00000353533.5:c.661G>T	p.Glu221Ter	p.E221*	ENST00000353533	NM_003010.3	221	Gaa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55240785	55240785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	136	626	1	ENST00000275493.2:c.2029C>T	p.Arg677Cys	p.R677C	ENST00000275493	NM_005228.3	677	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108141989	108141989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	20	232	0	ENST00000278616.4:c.2933C>A	p.Ser978Tyr	p.S978Y	ENST00000278616	NM_000051.3	978	tCt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	39	266	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157525044	157525044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	26	195	0	ENST00000346085.5:c.4939C>A	p.Leu1647Ile	p.L1647I	ENST00000346085	NM_020732.3	1647	Ctt/Att																																																																														
APC	324	MSKCC	GRCh37	5	112175457	112175457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	34	243	0	ENST00000257430.4:c.4166C>A	p.Ser1389Tyr	p.S1389Y	ENST00000257430	NM_000038.5	1389	tCt/tAt																																																																														
ATM	472	MSKCC	GRCh37	11	108216568	108216568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	39	193	0	ENST00000278616.4:c.8517C>A	p.Phe2839Leu	p.F2839L	ENST00000278616	NM_000051.3	2839	ttC/ttA																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209264	98209264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	107	500	1	ENST00000331920.6:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000331920	NM_000264.3	1425	tCg/tTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622457	28622457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	37	333	0	ENST00000241453.7:c.1160G>A	p.Arg387Gln	p.R387Q	ENST00000241453	NM_004119.2	387	cGa/cAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	41	192	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693887	47693887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	23	207	0	ENST00000233146.2:c.1601G>A	p.Arg534His	p.R534H	ENST00000233146	NM_000251.2	534	cGt/cAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584684	187584684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149295542		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	36	341	1	ENST00000441802.2:c.3349G>A	p.Val1117Met	p.V1117M	ENST00000441802	NM_005245.3	1117	Gtg/Atg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	11	384	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	31	240	0	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																																																														
AXL	558	MSKCC	GRCh37	19	41765576	41765576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	29	516	1	ENST00000301178.4:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000301178	NM_021913.4	818	Gaa/Aaa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482242	87482242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	57	434	0	ENST00000277120.3:c.1529C>T	p.Ser510Leu	p.S510L	ENST00000277120		510	tCg/tTg																																																																														
ATR	545	MSKCC	GRCh37	3	142168429	142168429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	47	230	0	ENST00000350721.4:c.7777C>A	p.Leu2593Ile	p.L2593I	ENST00000350721	NM_001184.3	2593	Ctt/Att																																																																														
EZH2	2146	MSKCC	GRCh37	7	148513849	148513849	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	18	290	0	ENST00000320356.2:c.1432G>T	p.Glu478Ter	p.E478*	ENST00000320356	NM_004456.4	478	Gaa/Taa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98232137	98232137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	14	301	0	ENST00000331920.6:c.1805G>A	p.Arg602Gln	p.R602Q	ENST00000331920	NM_000264.3	602	cGa/cAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37667784	37667784	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	35	273	0	ENST00000447079.4:c.2669G>A	p.Arg890His	p.R890H	ENST00000447079	NM_015083.1	890	cGc/cAc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856181	111856181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	47	214	2	ENST00000341259.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000341259	NM_005475.2	78	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542861	187542861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	22	217	0	ENST00000441802.2:c.4879C>T	p.Arg1627Ter	p.R1627*	ENST00000441802	NM_005245.3	1627	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	15	301	0	ENST00000342988.3:c.1529G>A	p.Gly510Glu	p.G510E	ENST00000342988	NM_005359.5	510	gGa/gAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	14	205	0	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160663	56160663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	52	288	0	ENST00000399503.3:c.937C>T	p.Arg313Trp	p.R313W	ENST00000399503	NM_005921.1	313	Cgg/Tgg																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346284	152346284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	36	358	0	ENST00000359321.1:c.286C>A	p.Leu96Ile	p.L96I	ENST00000359321	NM_005431.1	96	Ctt/Att																																																																														
RB1	5925	MSKCC	GRCh37	13	49030396	49030396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	26	276	0	ENST00000267163.4:c.1871C>A	p.Ser624Tyr	p.S624Y	ENST00000267163	NM_000321.2	624	tCt/tAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42050032	42050032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	47	232	0	ENST00000219905.7:c.7186C>T	p.Arg2396Ter	p.R2396*	ENST00000219905	NM_001164273.1	2396	Cga/Tga																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99203950	99203950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	20	203	0	ENST00000074304.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000074304	NM_001134224.1	938	cGa/cAa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918695	44918695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	13	142	0	ENST00000377967.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000377967	NM_021140.2	393	cGa/cAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709529	176709529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	10	204	0	ENST00000439151.2:c.5956C>T	p.Arg1986Cys	p.R1986C	ENST00000439151	NM_022455.4	1986	Cgc/Tgc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135796804	135796804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	70	185	0	ENST00000298552.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000298552	NM_001162426.1	228	cGa/cAa																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94201000	94201000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	20	257	0	ENST00000323929.3:c.1077G>T	p.Glu359Asp	p.E359D	ENST00000323929	NM_005591.3	359	gaG/gaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830958	72830958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	58	324	0	ENST00000268489.5:c.5623G>A	p.Glu1875Lys	p.E1875K	ENST00000268489	NM_006885.3	1875	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827900	40827900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	84	358	1	ENST00000373198.4:c.2528C>A	p.Ser843Tyr	p.S843Y	ENST00000373198	NM_133170.3	843	tCt/tAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027511	48027511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	40	242	0	ENST00000234420.5:c.2389G>T	p.Asp797Tyr	p.D797Y	ENST00000234420	NM_000179.2	797	Gac/Tac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164855	47164855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	29	207	0	ENST00000409792.3:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000409792	NM_014159.6	424	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026290	48026290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147737737		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	15	253	0	ENST00000234420.5:c.1168G>A	p.Asp390Asn	p.D390N	ENST00000234420	NM_000179.2	390	Gat/Aat																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030293	180030293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	65	552	0	ENST00000261937.6:c.3991G>T	p.Val1331Leu	p.V1331L	ENST00000261937	NM_182925.4	1331	Gtg/Ttg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710593	117710593	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145765584		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	70	209	0	ENST00000368508.3:c.1679G>A	p.Arg560His	p.R560H	ENST00000368508	NM_002944.2	560	cGc/cAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645910	67645910	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	49	355	0	ENST00000264010.4:c.838A>C	p.Asn280His	p.N280H	ENST00000264010	NM_006565.3	280	Aat/Cat																																																																														
IRF4	3662	MSKCC	GRCh37	6	394902	394902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	86	363	0	ENST00000380956.4:c.298G>A	p.Ala100Thr	p.A100T	ENST00000380956	NM_001195286.1	100	Gct/Act																																																																														
TOP1	7150	MSKCC	GRCh37	20	39728847	39728847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	61	237	0	ENST00000361337.2:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000361337	NM_003286.2	376	cGa/cAa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319887	62319887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	112	500	0	ENST00000508582.2:c.1801G>A	p.Asp601Asn	p.D601N	ENST00000508582		601	Gac/Aac																																																																														
CIC	23152	MSKCC	GRCh37	19	42794394	42794394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	45	595	0	ENST00000575354.2:c.1474C>T	p.Arg492Trp	p.R492W	ENST00000575354	NM_015125.3	492	Cgg/Tgg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	18	384	0	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56787287	56787287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	54	371	0	ENST00000337432.4:c.773G>A	p.Arg258His	p.R258H	ENST00000337432	NM_058216.2	258	cGt/cAt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58711261	58711261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	19	413	0	ENST00000305921.3:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000305921	NM_003620.3	250	cGa/cAa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729889	41729889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	76	385	0	ENST00000242208.4:c.640C>T	p.Arg214Trp	p.R214W	ENST00000242208	NM_002192.2	214	Cgg/Tgg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131421	202131421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	50	342	0	ENST00000358485.4:c.389G>T	p.Arg130Ile	p.R130I	ENST00000358485	NM_001080125.1	130	aGa/aTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673482	30673482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	70	377	1	ENST00000376406.3:c.3478C>T	p.Pro1160Ser	p.P1160S	ENST00000376406	NM_014641.2	1160	Cca/Tca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983784	15983784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150513105		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	65	354	0	ENST00000268712.3:c.3338G>A	p.Arg1113Gln	p.R1113Q	ENST00000268712	NM_006311.3	1113	cGa/cAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231239	98231239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	127	489	0	ENST00000331920.6:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000331920	NM_000264.3	682	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807914	3807914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	72	352	0	ENST00000262367.5:c.3505C>T	p.Arg1169Cys	p.R1169C	ENST00000262367	NM_004380.2	1169	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112173365	112173365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	26	223	0	ENST00000257430.4:c.2074C>T	p.Pro692Ser	p.P692S	ENST00000257430	NM_000038.5	692	Cct/Tct																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84383654	84383654	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	21	327	0	ENST00000321945.7:c.1198T>G	p.Phe400Val	p.F400V	ENST00000321945	NM_139076.2	400	Ttt/Gtt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276798	15276798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	116	553	0	ENST00000263388.2:c.5467G>A	p.Asp1823Asn	p.D1823N	ENST00000263388	NM_000435.2	1823	Gac/Aac																																																																														
TEK	7010	MSKCC	GRCh37	9	27172623	27172623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	18	340	0	ENST00000380036.4:c.638C>T	p.Ala213Val	p.A213V	ENST00000380036	NM_000459.3	213	gCc/gTc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286215	66286215	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	14	244	0	ENST00000273854.3:c.1471G>T	p.Glu491Ter	p.E491*	ENST00000273854	NM_004439.5	491	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108199878	108199878	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	14	128	0	ENST00000278616.4:c.7220C>A	p.Ser2407Ter	p.S2407*	ENST00000278616	NM_000051.3	2407	tCa/tAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66233141	66233141	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	43	230	1	ENST00000273854.3:c.1858C>T	p.Arg620Trp	p.R620W	ENST00000273854	NM_004439.5	620	Cgg/Tgg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614469	38614469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	35	293	0	ENST00000299084.4:c.235G>T	p.Asp79Tyr	p.D79Y	ENST00000299084	NM_152594.2	79	Gac/Tac																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818213	32818213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs143800384		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	135	473	0	ENST00000354258.4:c.1312C>T	p.Arg438Ter	p.R438*	ENST00000354258	NM_000593.5	438	Cga/Tga																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546618	9546618	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	66	369	0	ENST00000353224.5:c.1404G>T	p.Glu468Asp	p.E468D	ENST00000353224	NM_177990.2	468	gaG/gaT																																																																														
TET1	80312	MSKCC	GRCh37	10	70411605	70411605	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	33	217	0	ENST00000373644.4:c.4279C>T	p.Arg1427Ter	p.R1427*	ENST00000373644	NM_030625.2	1427	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447841	49447841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	72	487	1	ENST00000301067.7:c.593C>T	p.Ala198Val	p.A198V	ENST00000301067	NM_003482.3	198	gCg/gTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631537	28631537	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	37	217	0	ENST00000241453.7:c.431T>G	p.Phe144Cys	p.F144C	ENST00000241453	NM_004119.2	144	tTt/tGt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31472277	31472277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	64	359	0	ENST00000344624.3:c.2134G>A	p.Ala712Thr	p.A712T	ENST00000344624		712	Gcc/Acc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644715	134644715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	66	345	0	ENST00000398015.3:c.116C>T	p.Ala39Val	p.A39V	ENST00000398015	NM_004441.4	39	gCg/gTg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814756	139814756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	99	558	0	ENST00000247668.2:c.749C>T	p.Ser250Leu	p.S250L	ENST00000247668	NM_021138.3	250	tCg/tTg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63526195	63526195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	105	420	0	ENST00000307078.5:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000307078	NM_004655.3	811	Gag/Aag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688800	47688800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	20	230	0	ENST00000347630.2:c.500C>A	p.Ser167Tyr	p.S167Y	ENST00000347630	NM_001007230.1	167	tCt/tAt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243927	41243927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	17	392	0	ENST00000357654.3:c.3621G>T	p.Lys1207Asn	p.K1207N	ENST00000357654	NM_007294.3	1207	aaG/aaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444026	49444026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	40	472	0	ENST00000301067.7:c.3345C>A	p.Phe1115Leu	p.F1115L	ENST00000301067	NM_003482.3	1115	ttC/ttA																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026853	71026853	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	34	189	0	ENST00000318789.4:c.1369G>T	p.Glu457Ter	p.E457*	ENST00000318789	NM_032682.5	457	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108122680	108122680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	30	285	0	ENST00000278616.4:c.1724C>T	p.Ser575Leu	p.S575L	ENST00000278616	NM_000051.3	575	tCa/tTa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192435	138192435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	39	201	0	ENST00000237289.4:c.71G>T	p.Arg24Ile	p.R24I	ENST00000237289	NM_001270507.1	24	aGa/aTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435382	18435382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	25	232	0	ENST00000266497.5:c.367G>T	p.Glu123Ter	p.E123*	ENST00000266497		123	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76953080	76953080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	45	190	0	ENST00000373344.5:c.233G>A	p.Arg78Gln	p.R78Q	ENST00000373344	NM_000489.3	78	cGa/cAa																																																																														
SDHB	6390	MSKCC	GRCh37	1	17354361	17354361	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	21	172	0	ENST00000375499.3:c.424-1G>T		p.X142_splice	ENST00000375499	NM_003000.2	142																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46739368	46739368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	79	376	0	ENST00000371975.4:c.1559C>T	p.Ser520Leu	p.S520L	ENST00000371975	NM_003579.3	520	tCg/tTg																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166274	118166274	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	51	270	0	ENST00000369448.3:c.784G>T	p.Glu262Ter	p.E262*	ENST00000369448	NM_017709.3	262	Gaa/Taa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120496301	120496301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	20	204	0	ENST00000256646.2:c.2230C>A	p.Leu744Ile	p.L744I	ENST00000256646	NM_024408.3	744	Ctc/Atc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870306	155870306	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	77	372	0	ENST00000368323.3:c.533T>G	p.Leu178Arg	p.L178R	ENST00000368323	NM_006912.5	178	cTt/cGt																																																																														
FH	2271	MSKCC	GRCh37	1	241667455	241667455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	44	236	0	ENST00000366560.3:c.995C>T	p.Ala332Val	p.A332V	ENST00000366560	NM_000143.3	332	gCc/gTc																																																																														
RET	5979	MSKCC	GRCh37	10	43596047	43596047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	93	514	0	ENST00000355710.3:c.214C>A	p.Leu72Ile	p.L72I	ENST00000355710	NM_020975.4	72	Ctc/Atc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850697	63850697	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	27	240	0	ENST00000279873.7:c.1475A>C	p.Asp492Ala	p.D492A	ENST00000279873	NM_032199.2	492	gAc/gCc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88635831	88635831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	13	299	0	ENST00000372037.3:c.56C>A	p.Ser19Tyr	p.S19Y	ENST00000372037	NM_004329.2	19	tCt/tAt																																																																														
WT1	7490	MSKCC	GRCh37	11	32449530	32449530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	58	531	0	ENST00000332351.3:c.844G>A	p.Ala282Thr	p.A282T	ENST00000332351	NM_024426.4	282	Gct/Act																																																																														
EED	8726	MSKCC	GRCh37	11	85988112	85988112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	35	240	0	ENST00000263360.6:c.1057C>A	p.Leu353Ile	p.L353I	ENST00000263360	NM_003797.3	353	Ctt/Att																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94194195	94194195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	35	212	0	ENST00000323929.3:c.1233G>T	p.Glu411Asp	p.E411D	ENST00000323929	NM_005591.3	411	gaG/gaT																																																																														
ATM	472	MSKCC	GRCh37	11	108098563	108098563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3218684		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	18	181	0	ENST00000278616.4:c.133C>T	p.Arg45Trp	p.R45W	ENST00000278616	NM_000051.3	45	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108163347	108163347	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	22	258	0	ENST00000278616.4:c.4438C>T	p.Pro1480Ser	p.P1480S	ENST00000278616	NM_000051.3	1480	Cct/Tct																																																																														
ATM	472	MSKCC	GRCh37	11	108188130	108188130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	27	187	0	ENST00000278616.4:c.6229C>A	p.Leu2077Ile	p.L2077I	ENST00000278616	NM_000051.3	2077	Ctt/Att																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343697	118343697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	42	300	0	ENST00000534358.1:c.1823G>A	p.Arg608Gln	p.R608Q	ENST00000534358	NM_005933.3	608	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118380757	118380757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	42	287	0	ENST00000534358.1:c.10995G>T	p.Glu3665Asp	p.E3665D	ENST00000534358	NM_005933.3	3665	gaG/gaT																																																																														
CBL	867	MSKCC	GRCh37	11	119103249	119103249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	45	289	0	ENST00000264033.4:c.287G>A	p.Arg96His	p.R96H	ENST00000264033	NM_005188.3	96	cGt/cAt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	417093	417093	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	16	217	0	ENST00000399788.2:c.3457A>C	p.Thr1153Pro	p.T1153P	ENST00000399788	NM_001042603.1	1153	Aca/Cca																																																																														
KDM5A	5927	MSKCC	GRCh37	12	475224	475224	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	37	382	0	ENST00000399788.2:c.413A>C	p.Lys138Thr	p.K138T	ENST00000399788	NM_001042603.1	138	aAa/aCa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435250	18435250	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	20	253	0	ENST00000266497.5:c.235A>C	p.Asn79His	p.N79H	ENST00000266497		79	Aat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378706	25378706	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	19	171	0	ENST00000256078.4:c.292G>T	p.Glu98Ter	p.E98*	ENST00000256078	NM_033360.2	98	Gaa/Taa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246617	46246617	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	15	139	1	ENST00000334344.6:c.4711G>T	p.Glu1571Ter	p.E1571*	ENST00000334344	NM_152641.2	1571	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425221	49425221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	53	663	0	ENST00000301067.7:c.13267C>T	p.Pro4423Ser	p.P4423S	ENST00000301067	NM_003482.3	4423	Cca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443712	49443712	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	66	546	0	ENST00000301067.7:c.3659T>G	p.Phe1220Cys	p.F1220C	ENST00000301067	NM_003482.3	1220	tTt/tGt																																																																														
MSI1	4440	MSKCC	GRCh37	12	120806669	120806669	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	31	186	0	ENST00000257552.2:c.67T>G	p.Phe23Val	p.F23V	ENST00000257552	NM_002442.3	23	Ttc/Gtc																																																																														
POLE	5426	MSKCC	GRCh37	12	133250189	133250189	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	95	410	0	ENST00000320574.5:c.1331T>A	p.Met444Lys	p.M444K	ENST00000320574	NM_006231.2	444	aTg/aAg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28886195	28886195	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	45	338	0	ENST00000282397.4:c.3427G>T	p.Glu1143Ter	p.E1143*	ENST00000282397	NM_002019.4	1143	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48955551	48955551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	12	246	0	ENST00000267163.4:c.1667G>A	p.Arg556Gln	p.R556Q	ENST00000267163	NM_000321.2	556	cGa/cAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42003117	42003117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	15	440	1	ENST00000219905.7:c.2654C>A	p.Ser885Tyr	p.S885Y	ENST00000219905	NM_001164273.1	885	tCt/tAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749187	43749187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	55	492	0	ENST00000382044.4:c.1619G>T	p.Arg540Ile	p.R540I	ENST00000382044	NM_001141980.1	540	aGa/aTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420199	88420199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	77	339	0	ENST00000360948.2:c.2487G>T	p.Lys829Asn	p.K829N	ENST00000360948	NM_001012338.2	829	aaG/aaT																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2636680	2636680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	61	317	1	ENST00000342085.4:c.1129G>T	p.Asp377Tyr	p.D377Y	ENST00000342085	NM_002613.4	377	Gac/Tac																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645270	67645270	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	74	428	0	ENST00000264010.4:c.535G>T	p.Glu179Ter	p.E179*	ENST00000264010	NM_006565.3	179	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992719	72992719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	66	514	0	ENST00000268489.5:c.1326G>T	p.Glu442Asp	p.E442D	ENST00000268489	NM_006885.3	442	gaG/gaT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89337244	89337244	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	129	443	0	ENST00000301030.4:c.7787A>G	p.Asp2596Gly	p.D2596G	ENST00000301030	NM_001256183.1	2596	gAc/gGc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7218340	7218340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	123	407	1	ENST00000380728.2:c.32C>T	p.Ser11Phe	p.S11F	ENST00000380728		11	tCc/tTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16001809	16001809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	25	272	0	ENST00000268712.3:c.2692A>C	p.Met898Leu	p.M898L	ENST00000268712	NM_006311.3	898	Atg/Ctg																																																																														
NF1	4763	MSKCC	GRCh37	17	29684049	29684049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	35	365	0	ENST00000358273.4:c.7810C>A	p.Leu2604Ile	p.L2604I	ENST00000358273	NM_001042492.2	2604	Ctc/Atc																																																																														
NF1	4763	MSKCC	GRCh37	17	29685996	29685996	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	25	187	0	ENST00000358273.4:c.8123T>G	p.Phe2708Cys	p.F2708C	ENST00000358273	NM_001042492.2	2708	tTt/tGt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489867	40489867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	39	334	0	ENST00000264657.5:c.559G>T	p.Asp187Tyr	p.D187Y	ENST00000264657	NM_139276.2	187	Gat/Tat																																																																														
BRCA1	672	MSKCC	GRCh37	17	41234450	41234450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	28	338	0	ENST00000357654.3:c.4328G>A	p.Arg1443Gln	p.R1443Q	ENST00000357654	NM_007294.3	1443	cGa/cAa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47684678	47684678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	69	339	0	ENST00000347630.2:c.771C>A	p.Phe257Leu	p.F257L	ENST00000347630	NM_001007230.1	257	ttC/ttA																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58734177	58734177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	39	316	0	ENST00000305921.3:c.1235C>T	p.Ser412Phe	p.S412F	ENST00000305921	NM_003620.3	412	tCc/tTc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117851	70117851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	43	379	0	ENST00000245479.2:c.319C>T	p.Arg107Trp	p.R107W	ENST00000245479	NM_000346.3	107	Cgg/Tgg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374867	45374867	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	33	338	0	ENST00000262160.6:c.976G>T	p.Glu326Ter	p.E326*	ENST00000262160	NM_005901.5	326	Gaa/Taa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45394784	45394784	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	34	197	0	ENST00000262160.6:c.565G>T	p.Glu189Ter	p.E189*	ENST00000262160	NM_005901.5	189	Gaa/Taa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573637	48573637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	17	254	0	ENST00000342988.3:c.221T>C	p.Ile74Thr	p.I74T	ENST00000342988	NM_005359.5	74	aTa/aCa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291617	15291617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150941674		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	28	560	0	ENST00000263388.2:c.3017G>A	p.Arg1006His	p.R1006H	ENST00000263388	NM_000435.2	1006	cGc/cAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976479	18976479	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	132	647	0	ENST00000262803.5:c.3129T>G	p.Asp1043Glu	p.D1043E	ENST00000262803	NM_002911.3	1043	gaT/gaG																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19258614	19258614	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138148108		P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	94	543	0	ENST00000162023.5:c.286G>A	p.Asp96Asn	p.D96N	ENST00000162023		96	Gat/Aat																																																																														
CIC	23152	MSKCC	GRCh37	19	42798413	42798413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	114	538	2	ENST00000575354.2:c.4284G>T	p.Lys1428Asn	p.K1428N	ENST00000575354	NM_015125.3	1428	aaG/aaT																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872210	45872210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	82	515	0	ENST00000391945.4:c.224G>T	p.Arg75Ile	p.R75I	ENST00000391945	NM_000400.3	75	aGa/aTa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52705261	52705261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	31	317	0	ENST00000322088.6:c.143G>A	p.Arg48Gln	p.R48Q	ENST00000322088	NM_014225.5	48	cGa/cAa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068390	26068390	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	18	229	0	ENST00000435504.4:c.100A>C	p.Ile34Leu	p.I34L	ENST00000435504		34	Att/Ctt																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46588129	46588129	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	28	492	0	ENST00000263734.3:c.679G>T	p.Glu227Ter	p.E227*	ENST00000263734	NM_001430.4	227	Gaa/Taa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46611713	46611713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	106	551	0	ENST00000263734.3:c.2527G>T	p.Asp843Tyr	p.D843Y	ENST00000263734	NM_001430.4	843	Gac/Tac																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637284	47637284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	77	402	0	ENST00000233146.2:c.418G>T	p.Asp140Tyr	p.D140Y	ENST00000233146	NM_000251.2	140	Gat/Tat																																																																														
MSH2	4436	MSKCC	GRCh37	2	47643558	47643558	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	36	312	0	ENST00000233146.2:c.1066A>C	p.Ile356Leu	p.I356L	ENST00000233146	NM_000251.2	356	Ata/Cta																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693878	47693878	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	22	213	0	ENST00000233146.2:c.1592A>C	p.Lys531Thr	p.K531T	ENST00000233146	NM_000251.2	531	aAa/aCa																																																																														
REL	5966	MSKCC	GRCh37	2	61147198	61147198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	45	228	0	ENST00000295025.8:c.876G>T	p.Lys292Asn	p.K292N	ENST00000295025	NM_002908.2	292	aaG/aaT																																																																														
XPO1	7514	MSKCC	GRCh37	2	61726852	61726852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	23	208	0	ENST00000401558.2:c.586G>T	p.Asp196Tyr	p.D196Y	ENST00000401558	NM_003400.3	196	Gac/Tac																																																																														
ACVR1	90	MSKCC	GRCh37	2	158637027	158637027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	71	358	1	ENST00000263640.3:c.153G>T	p.Gln51His	p.Q51H	ENST00000263640	NM_001105.4	51	caG/caT																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198270150	198270150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	72	288	0	ENST00000335508.6:c.1286G>A	p.Arg429Gln	p.R429Q	ENST00000335508	NM_012433.2	429	cGa/cAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495224	212495224	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	10	278	0	ENST00000342788.4:c.2042A>C	p.Lys681Thr	p.K681T	ENST00000342788	NM_005235.2	681	aAa/aCa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730788	40730788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	75	427	0	ENST00000373198.4:c.3747T>G	p.Asn1249Lys	p.N1249K	ENST00000373198	NM_133170.3	1249	aaT/aaG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980728	40980728	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	45	316	0	ENST00000373198.4:c.1758T>G	p.Ile586Met	p.I586M	ENST00000373198	NM_133170.3	586	atT/atG																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206833	36206833	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	88	335	0	ENST00000300305.3:c.679G>T	p.Glu227Ter	p.E227*	ENST00000300305		227	Gaa/Taa																																																																														
NF2	4771	MSKCC	GRCh37	22	30032808	30032808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	96	303	0	ENST00000338641.4:c.183C>A	p.Phe61Leu	p.F61L	ENST00000338641	NM_000268.3	61	ttC/ttA																																																																														
EP300	2033	MSKCC	GRCh37	22	41513615	41513615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	32	480	0	ENST00000263253.7:c.519G>T	p.Met173Ile	p.M173I	ENST00000263253	NM_001429.3	173	atG/atT																																																																														
EP300	2033	MSKCC	GRCh37	22	41574278	41574278	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	77	506	0	ENST00000263253.7:c.6563T>C	p.Met2188Thr	p.M2188T	ENST00000263253	NM_001429.3	2188	aTg/aCg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12627220	12627220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	59	319	0	ENST00000251849.4:c.1496C>A	p.Ser499Tyr	p.S499Y	ENST00000251849	NM_002880.3	499	tCt/tAt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090071	37090071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	24	346	0	ENST00000231790.2:c.1960C>T	p.Pro654Ser	p.P654S	ENST00000231790	NM_000249.3	654	Cct/Tct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47108598	47108598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	22	208	0	ENST00000409792.3:c.6071G>T	p.Arg2024Leu	p.R2024L	ENST00000409792	NM_014159.6	2024	cGa/cTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161991	47161991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	29	261	0	ENST00000409792.3:c.4135G>T	p.Asp1379Tyr	p.D1379Y	ENST00000409792	NM_014159.6	1379	Gac/Tac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162333	47162333	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	12	263	0	ENST00000409792.3:c.3793G>T	p.Glu1265Ter	p.E1265*	ENST00000409792	NM_014159.6	1265	Gaa/Taa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72873590	72873590	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	23	259	0	ENST00000325599.8:c.712A>C	p.Asn238His	p.N238H	ENST00000325599	NM_018130.2	238	Aat/Cat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89156963	89156963	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	95	381	0	ENST00000336596.2:c.65T>G	p.Leu22Arg	p.L22R	ENST00000336596	NM_005233.5	22	cTg/cGg																																																																														
ATR	545	MSKCC	GRCh37	3	142274944	142274944	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	35	272	0	ENST00000350721.4:c.2116G>T	p.Glu706Ter	p.E706*	ENST00000350721	NM_001184.3	706	Gaa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142281302	142281302	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	62	342	0	ENST00000350721.4:c.942A>C	p.Glu314Asp	p.E314D	ENST00000350721	NM_001184.3	314	gaA/gaC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952012	178952012	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	33	254	0	ENST00000263967.3:c.3067C>T	p.Arg1023Ter	p.R1023*	ENST00000263967	NM_006218.2	1023	Cga/Tga																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665348	182665348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	22	151	0	ENST00000292782.4:c.593A>C	p.Lys198Thr	p.K198T	ENST00000292782	NM_020640.2	198	aAa/aCa																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182681676	182681676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	36	246	0	ENST00000292782.4:c.382G>T	p.Glu128Ter	p.E128*	ENST00000292782	NM_020640.2	128	Gaa/Taa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155354	185155354	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	53	340	0	ENST00000265026.3:c.595G>T	p.Glu199Ter	p.E199*	ENST00000265026	NM_004721.4	199	Gaa/Taa																																																																														
BCL6	604	MSKCC	GRCh37	3	187442741	187442741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	38	252	0	ENST00000232014.4:c.1965G>T	p.Glu655Asp	p.E655D	ENST00000232014	NM_001130845.1	655	gaG/gaT																																																																														
TP63	8626	MSKCC	GRCh37	3	189607164	189607164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	28	498	0	ENST00000264731.3:c.1543G>T	p.Asp515Tyr	p.D515Y	ENST00000264731	NM_003722.4	515	Gac/Tac																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1978263	1978263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	93	567	0	ENST00000382891.5:c.3683G>A	p.Arg1228His	p.R1228H	ENST00000382891	NM_133335.3	1228	cGc/cAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133455	55133455	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	39	291	0	ENST00000257290.5:c.760-1G>A		p.X254_splice	ENST00000257290	NM_006206.4	254																																																																															
PDGFRA	5156	MSKCC	GRCh37	4	55156540	55156540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	55	383	0	ENST00000257290.5:c.2941C>T	p.Arg981Cys	p.R981C	ENST00000257290	NM_006206.4	981	Cgt/Tgt																																																																														
KIT	3815	MSKCC	GRCh37	4	55565835	55565835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	44	388	0	ENST00000288135.5:c.659G>T	p.Ser220Ile	p.S220I	ENST00000288135	NM_000222.2	220	aGc/aTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55972933	55972933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	10	286	0	ENST00000263923.4:c.1457G>T	p.Arg486Ile	p.R486I	ENST00000263923	NM_002253.2	486	aGa/aTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467748	66467748	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	21	224	0	ENST00000273854.3:c.521T>G	p.Ile174Ser	p.I174S	ENST00000273854	NM_004439.5	174	aTt/aGt																																																																														
TET2	54790	MSKCC	GRCh37	4	106156426	106156426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	19	270	0	ENST00000380013.4:c.1327A>G	p.Thr443Ala	p.T443A	ENST00000380013	NM_001127208.2	443	Aca/Gca																																																																														
TET2	54790	MSKCC	GRCh37	4	106183003	106183003	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	10	147	0	ENST00000380013.4:c.4042C>A	p.Gln1348Lys	p.Q1348K	ENST00000380013	NM_001127208.2	1348	Cag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250828	153250828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	30	262	0	ENST00000281708.4:c.1232G>A	p.Gly411Asp	p.G411D	ENST00000281708	NM_033632.3	411	gGc/gAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517885	187517885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	34	299	0	ENST00000441802.2:c.12809G>A	p.Arg4270Gln	p.R4270Q	ENST00000441802	NM_005245.3	4270	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187525683	187525683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	17	292	0	ENST00000441802.2:c.10396G>T	p.Asp3466Tyr	p.D3466Y	ENST00000441802	NM_005245.3	3466	Gat/Tat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534451	187534451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	40	270	0	ENST00000441802.2:c.9275T>C	p.Val3092Ala	p.V3092A	ENST00000441802	NM_005245.3	3092	gTt/gCt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542918	187542918	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	22	137	0	ENST00000441802.2:c.4822A>C	p.Asn1608His	p.N1608H	ENST00000441802	NM_005245.3	1608	Aat/Cat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628899	187628899	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	83	403	0	ENST00000441802.2:c.2083A>T	p.Asn695Tyr	p.N695Y	ENST00000441802	NM_005245.3	695	Aac/Tac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629270	187629270	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	80	417	0	ENST00000441802.2:c.1712A>C	p.Lys571Thr	p.K571T	ENST00000441802	NM_005245.3	571	aAa/aCa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86633900	86633900	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	13	207	0	ENST00000274376.6:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000274376	NM_002890.2	337	Gaa/Taa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645079	86645079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	48	212	1	ENST00000274376.6:c.1151G>A	p.Gly384Asp	p.G384D	ENST00000274376	NM_002890.2	384	gGc/gAc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672056	30672056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	39	497	0	ENST00000376406.3:c.4904C>A	p.Ser1635Tyr	p.S1635Y	ENST00000376406	NM_014641.2	1635	tCt/tAt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190436	32190436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	74	622	2	ENST00000375023.3:c.303C>A	p.Phe101Leu	p.F101L	ENST00000375023	NM_004557.3	101	ttC/ttA																																																																														
TAP1	6890	MSKCC	GRCh37	6	32820952	32820952	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	137	652	0	ENST00000354258.4:c.642G>A	p.Trp214Ter	p.W214*	ENST00000354258	NM_000593.5	214	tgG/tgA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967945	93967945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	20	302	1	ENST00000369303.4:c.1982C>T	p.Ala661Val	p.A661V	ENST00000369303	NM_004440.3	661	gCa/gTa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982028	93982028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	42	229	0	ENST00000369303.4:c.1437G>T	p.Lys479Asn	p.K479N	ENST00000369303	NM_004440.3	479	aaG/aaT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120442	94120442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	26	240	0	ENST00000369303.4:c.609G>T	p.Lys203Asn	p.K203N	ENST00000369303	NM_004440.3	203	aaG/aaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663635	117663635	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	45	281	0	ENST00000368508.3:c.4597A>C	p.Lys1533Gln	p.K1533Q	ENST00000368508	NM_002944.2	1533	Aaa/Caa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725561	117725561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	46	287	0	ENST00000368508.3:c.320C>T	p.Ala107Val	p.A107V	ENST00000368508	NM_002944.2	107	gCt/gTt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419939	152419939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	100	403	0	ENST00000206249.3:c.1626G>T	p.Glu542Asp	p.E542D	ENST00000206249	NM_000125.3	542	gaG/gaT																																																																														
ETV1	2115	MSKCC	GRCh37	7	13978836	13978836	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	57	296	0	ENST00000405192.2:c.271G>T	p.Glu91Ter	p.E91*	ENST00000405192	NM_001163147.1	91	Gaa/Taa																																																																														
HGF	3082	MSKCC	GRCh37	7	81335663	81335663	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	24	341	0	ENST00000222390.5:c.1697A>G	p.Asn566Ser	p.N566S	ENST00000222390	NM_000601.4	566	aAt/aGt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508803	106508803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	41	434	0	ENST00000359195.3:c.797G>T	p.Ser266Ile	p.S266I	ENST00000359195	NM_002649.2	266	aGc/aTc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148512039	148512039	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	28	253	0	ENST00000320356.2:c.1639T>G	p.Phe547Val	p.F547V	ENST00000320356	NM_004456.4	547	Ttt/Gtt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873742	151873742	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	54	365	0	ENST00000262189.6:c.8796T>G	p.Ile2932Met	p.I2932M	ENST00000262189	NM_170606.2	2932	atT/atG																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38272107	38272107	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	101	417	0	ENST00000425967.3:c.2111T>G	p.Phe704Cys	p.F704C	ENST00000425967	NM_001174067.1	704	tTt/tGt																																																																														
LYN	4067	MSKCC	GRCh37	8	56864548	56864548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	55	356	0	ENST00000519728.1:c.511G>T	p.Asp171Tyr	p.D171Y	ENST00000519728	NM_002350.3	171	Gac/Tac																																																																														
TCEB1	6921	MSKCC	GRCh37	8	74858960	74858960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	40	291	1	ENST00000284811.8:c.244C>T	p.Arg82Cys	p.R82C	ENST00000284811		82	Cgc/Tgc																																																																														
TEK	7010	MSKCC	GRCh37	9	27158053	27158053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	72	465	1	ENST00000380036.4:c.277G>T	p.Ala93Ser	p.A93S	ENST00000380036	NM_000459.3	93	Gct/Tct																																																																														
TEK	7010	MSKCC	GRCh37	9	27202881	27202881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	44	331	0	ENST00000380036.4:c.1973C>A	p.Ser658Tyr	p.S658Y	ENST00000380036	NM_000459.3	658	tCt/tAt																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1331500	1331500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	100	383	0	ENST00000381566.1:c.28G>A	p.Ala10Thr	p.A10T	ENST00000381566		10	Gct/Act																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933989	39933989	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	53	266	0	ENST00000378444.4:c.610T>G	p.Tyr204Asp	p.Y204D	ENST00000378444	NM_001123385.1	204	Tac/Gac																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44945125	44945125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	35	138	0	ENST00000377967.4:c.3449A>G	p.Asn1150Ser	p.N1150S	ENST00000377967	NM_021140.2	1150	aAc/aGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0037899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	92	149	0	ENST00000371953.3:c.1027-1G>A		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
PREX2	80243	MSKCC	GRCh37	8	69058536	69058536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753703		P-0037899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	202	369	0	ENST00000288368.4:c.4180C>T	p.Arg1394Trp	p.R1394W	ENST00000288368	NM_024870.2	1394	Cgg/Tgg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64128648	64128648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	274	435	0	ENST00000334205.4:c.505C>A	p.Leu169Met	p.L169M	ENST00000334205	NM_003942.2	169	Ctg/Atg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528079	157528079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	83	410	0	ENST00000346085.5:c.5804C>T	p.Ala1935Val	p.A1935V	ENST00000346085	NM_020732.3	1935	gCg/gTg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871873	12871873	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	128	161	0	ENST00000228872.4:c.592del	p.Thr198ArgfsTer27	p.T198Rfs*27	ENST00000228872	NM_004064.3	197	cAa/ca																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14014224	14014224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	33	285	0	ENST00000311895.7:c.202G>A	p.Glu68Lys	p.E68K	ENST00000311895	NM_005236.2	68	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	582	600	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319369	62319369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	276	937	1	ENST00000508582.2:c.1633G>A	p.Asp545Asn	p.D545N	ENST00000508582		545	Gat/Aat																																																																														
MED12	9968	MSKCC	GRCh37	X	70344973	70344973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	77	623	1	ENST00000374080.3:c.2203G>A	p.Ala735Thr	p.A735T	ENST00000374080		735	Gcc/Acc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332884	65332884	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	84	191	0	ENST00000342505.4:c.655C>T	p.Arg219Ter	p.R219*	ENST00000342505	NM_002227.2	219	Cga/Tga																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980726	70980726	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	141	596	0	ENST00000276594.2:c.742C>T	p.Gln248Ter	p.Q248*	ENST00000276594	NM_024504.3	248	Caa/Taa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2110704	2110704	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	269	821	0	ENST00000219476.3:c.1009G>C	p.Glu337Gln	p.E337Q	ENST00000219476	NM_000548.3	337	Gag/Cag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35861085	35861085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	71	283	0	ENST00000303115.3:c.214G>A	p.Glu72Lys	p.E72K	ENST00000303115	NM_002185.3	72	Gaa/Aaa																																																																														
RET	5979	MSKCC	GRCh37	10	43622086	43622086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	103	412	0	ENST00000355710.3:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000355710	NM_020975.4	1035	Gag/Aag																																																																														
JUN	3725	MSKCC	GRCh37	1	59248117	59248117	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	65	201	0	ENST00000371222.2:c.626A>C	p.His209Pro	p.H209P	ENST00000371222	NM_002228.3	209	cAc/cCc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145018	58145018	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	395	564	0	ENST00000257904.6:c.326del	p.Pro109HisfsTer12	p.P109Hfs*12	ENST00000257904	NM_000075.3	109	cCa/ca																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30132919	30132919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	282	513	0	ENST00000331968.5:c.682G>T	p.Asp228Tyr	p.D228Y	ENST00000331968	NM_002742.2	228	Gat/Tat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858291	9858291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	113	432	0	ENST00000330684.3:c.3110C>T	p.Ala1037Val	p.A1037V	ENST00000330684	NM_001134407.1	1037	gCa/gTa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	652	829	1	ENST00000171111.5:c.1409G>T	p.Arg470Leu	p.R470L	ENST00000171111	NM_203500.1	470	cGt/cTt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461527	138461528	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	129	455	0	ENST00000289153.2:c.493_494delinsTT	p.Gly165Leu	p.G165L	ENST00000289153	NM_006219.2	165	GGa/TTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467410	66467410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	61	237	0	ENST00000273854.3:c.859G>T	p.Gly287Trp	p.G287W	ENST00000273854	NM_004439.5	287	Ggg/Tgg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86681162	86681162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	79	255	0	ENST00000274376.6:c.2803A>T	p.Lys935Ter	p.K935*	ENST00000274376	NM_002890.2	935	Aaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521544	8521544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0037914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	115	450	1	ENST00000356435.5:c.694C>A	p.Arg232Ser	p.R232S	ENST00000356435		232	Cgc/Agc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	305	278	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	313	643	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	187	324	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	187	324	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70344985	70344985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	284	568	0	ENST00000374080.3:c.2215C>T	p.Pro739Ser	p.P739S	ENST00000374080		739	Ccc/Tcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630303	187630303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	291	605	0	ENST00000441802.2:c.679C>T	p.Arg227Cys	p.R227C	ENST00000441802	NM_005245.3	227	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	117	200	1				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49445847	49445847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	302	950	0	ENST00000301067.7:c.1619C>T	p.Pro540Leu	p.P540L	ENST00000301067	NM_003482.3	540	cCt/cTt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223063	5223078	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGGCCGCCGCGGCT	CCAGGCCGCCGCGGCT	-			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	181	404	0	ENST00000357368.4:c.2725_2740del	p.Ser909AlafsTer8	p.S909Afs*8	ENST00000357368	NM_002850.3	909	AGCCGCGGCGGCCTGGgc/gc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18272825	18272825	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	338	644	0	ENST00000222254.8:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000222254	NM_005027.3	289	Cag/Tag																																																																														
KDR	3791	MSKCC	GRCh37	4	55961752	55961752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	98	379	0	ENST00000263923.4:c.2809C>T	p.Pro937Ser	p.P937S	ENST00000263923	NM_002253.2	937	Ccc/Tcc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523607	176523607	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	403	721	0	ENST00000292408.4:c.2018G>A	p.Trp673Ter	p.W673*	ENST00000292408	NM_213647.1	673	tGg/tAg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673324	30673325	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	352	812	2	ENST00000376406.3:c.3635_3636delinsTT	p.Ser1212Phe	p.S1212F	ENST00000376406	NM_014641.2	1212	tCC/tTT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120509	94120509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	205	332	0	ENST00000369303.4:c.542G>A	p.Gly181Glu	p.G181E	ENST00000369303	NM_004440.3	181	gGa/gAa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372349	55372349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	242	561	0	ENST00000297316.4:c.1039G>A	p.Asp347Asn	p.D347N	ENST00000297316	NM_022454.3	347	Gac/Aac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396919	139396919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	15	348	0	ENST00000277541.6:c.5189del	p.Pro1730ArgfsTer68	p.P1730Rfs*68	ENST00000277541	NM_017617.3	1730	cCg/cg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399887	139399887	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	35	762	0	ENST00000277541.6:c.4461G>A	p.Trp1487Ter	p.W1487*	ENST00000277541	NM_017617.3	1487	tgG/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	146	462	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	122	481	0	ENST00000342988.3:c.1055G>C	p.Gly352Ala	p.G352A	ENST00000342988	NM_005359.5	352	gGa/gCa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	72	544	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112178268	112178268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	31	421	1	ENST00000257430.4:c.6977G>A	p.Arg2326Gln	p.R2326Q	ENST00000257430	NM_000038.5	2326	cGa/cAa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118881	70118882	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	185	593	1	ENST00000245479.2:c.454dup	p.Arg152ProfsTer100	p.R152Pfs*100	ENST00000245479	NM_000346.3	151	-/C																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857885	9857885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	107	603	1	ENST00000330684.3:c.3516G>T	p.Leu1172Phe	p.L1172F	ENST00000330684	NM_001134407.1	1172	ttG/ttT																																																																														
NUP93	9688	MSKCC	GRCh37	16	56870564	56870564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	115	428	0	ENST00000308159.5:c.1834G>A	p.Val612Ile	p.V612I	ENST00000308159	NM_014669.4	612	Gtt/Att																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374762	149374762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	39	281	1	ENST00000360632.3:c.332C>T	p.Ala111Val	p.A111V	ENST00000360632	NM_015472.4	111	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	338	451	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120787	115120787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	184	631	0	ENST00000257566.3:c.219G>T	p.Glu73Asp	p.E73D	ENST00000257566	NM_016569.3	73	gaG/gaT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262126	10262126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	213	786	0	ENST00000340748.4:c.2165A>G	p.Lys722Arg	p.K722R	ENST00000340748		722	aAg/aGg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623236	52623236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	152	416	0	ENST00000394830.3:c.2815G>A	p.Gly939Ser	p.G939S	ENST00000394830	NM_018313.4	939	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112174031	112174032	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0037964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	326	480	0	ENST00000257430.4:c.2744_2745del	p.Val915AspfsTer3	p.V915Dfs*3	ENST00000257430	NM_000038.5	914	TGt/t																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0037964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	141	452	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	108	487	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879885	37879885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	85	792	0	ENST00000269571.5:c.2180G>C	p.Gly727Ala	p.G727A	ENST00000269571		727	gGa/gCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	31	480	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	73	469	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	73	469	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	73	469	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	82	679	1	ENST00000269305.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000269305	NM_001126112.2	196	cGa/cAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244706	46244706	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	60	642	0	ENST00000334344.6:c.2800C>T	p.Gln934Ter	p.Q934*	ENST00000334344	NM_152641.2	934	Caa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108202753	108202753	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	102	418	0	ENST00000278616.4:c.7777C>T	p.Gln2593Ter	p.Q2593*	ENST00000278616	NM_000051.3	2593	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970945	21970945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	102	636	0	ENST00000304494.5:c.413G>C	p.Arg138Thr	p.R138T	ENST00000304494	NM_000077.4	138	aGa/aCa																																																																														
ATM	472	MSKCC	GRCh37	11	108224531	108224531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	79	390	0	ENST00000278616.4:c.8710G>C	p.Glu2904Gln	p.E2904Q	ENST00000278616	NM_000051.3	2904	Gag/Cag																																																																														
NBN	4683	MSKCC	GRCh37	8	90976662	90976662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	44	492	0	ENST00000265433.3:c.970G>A	p.Asp324Asn	p.D324N	ENST00000265433	NM_002485.4	324	Gat/Aat																																																																														
TBX3	6926	MSKCC	GRCh37	12	115110031	115110031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	89	711	0	ENST00000257566.3:c.1847C>T	p.Ser616Phe	p.S616F	ENST00000257566	NM_016569.3	616	tCt/tTt																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400810	72400810	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	42	402	0	ENST00000357731.5:c.361C>T	p.Gln121Ter	p.Q121*	ENST00000357731	NM_173808.2	121	Cag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108164054	108164054	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	54	222	0	ENST00000278616.4:c.4626G>C	p.Leu1542Phe	p.L1542F	ENST00000278616	NM_000051.3	1542	ttG/ttC																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377033	118377033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	98	511	0	ENST00000534358.1:c.10426G>C	p.Asp3476His	p.D3476H	ENST00000534358	NM_005933.3	3476	Gat/Cat																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164457	36164457	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	36	256	0	ENST00000300305.3:c.1418A>T	p.Glu473Val	p.E473V	ENST00000300305		473	gAg/gTg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155416	185155416	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	46	376	0	ENST00000265026.3:c.657C>G	p.Phe219Leu	p.F219L	ENST00000265026	NM_004721.4	219	ttC/ttG																																																																														
IRF4	3662	MSKCC	GRCh37	6	401687	401687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	75	638	1	ENST00000380956.4:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000380956	NM_001195286.1	337	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	152	714	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	117	375	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591114	67591124	+	protein_altering_variant	In_Frame_Del	DEL	CCTTATCCAGC	CCTTATCCAGC	TA			P-0037966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	45	437	1	ENST00000274335.5:c.1707_1717delinsTA	p.Leu570_Leu573delinsMet	p.L570_L573delinsM	ENST00000274335		569	gaCCTTATCCAGCtg/gaTAtg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683812	117683812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	104	578	2	ENST00000368508.3:c.3335C>A	p.Ser1112Tyr	p.S1112Y	ENST00000368508	NM_002944.2	1112	tCt/tAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	151	283	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	178	439	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0037967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	103	223	0	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38178604	38178606	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0037967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	161	270	0	ENST00000317025.8:c.1793_1795del	p.Lys598del	p.K598del	ENST00000317025	NM_023034.1	598	aAGAtc/atc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581086	48581160	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAAGATTTTTTTTTCTGGGAATAGAAGCTTATAAAAATTTAAAATATGTTTAATTTTCTATATAGCTCCATCAAG	TAAGATTTTTTTTTCTGGGAATAGAAGCTTATAAAAATTTAAAATATGTTTAATTTTCTATATAGCTCCATCAAG	-			P-0037967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	83	89	0	ENST00000342988.3:c.455-63_466del		p.X152_splice	ENST00000342988	NM_005359.5	152																																																																															
APC	324	MSKCC	GRCh37	5	112175015	112175015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	95	178	0	ENST00000257430.4:c.3724C>T	p.Gln1242Ter	p.Q1242*	ENST00000257430	NM_000038.5	1242	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	18	441	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	28	543	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	173	398	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	200	434	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302801	15302801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	263	759	0	ENST00000263388.2:c.649G>A	p.Asp217Asn	p.D217N	ENST00000263388	NM_000435.2	217	Gac/Aac																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514277	69514277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	243	731	0	ENST00000294312.3:c.404G>T	p.Arg135Leu	p.R135L	ENST00000294312	NM_005117.2	135	cGa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579318	7579325	+	frameshift_variant	Frame_Shift_Del	DEL	AGTCACAG	AGTCACAG	-			P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	268	596	0	ENST00000269305.4:c.362_369del	p.Ser121LeufsTer25	p.S121Lfs*25	ENST00000269305	NM_001126112.2	121	tCTGTGACT/t																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63534428	63534429	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	204	634	0	ENST00000307078.5:c.1092dup	p.Val365ArgfsTer9	p.V365Rfs*9	ENST00000307078	NM_004655.3	364	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7577074	7577075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	627	730	0	ENST00000269305.4:c.863dupA	p.Asn288LysfsTer18	p.N288Kfs*18	ENST00000269305	NM_001126112.2	288	aat/aaAt																																																																														
APC	324	MSKCC	GRCh37	5	112175447	112175447	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0037972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	208	376	0	ENST00000257430.4:c.4156A>T	p.Arg1386Ter	p.R1386*	ENST00000257430	NM_000038.5	1386	Aga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55968196	55968196	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0037972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	228	452	0	ENST00000263923.4:c.2135-1G>T		p.X712_splice	ENST00000263923	NM_002253.2	712																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12011106	12011106	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0037972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	237	299	0	ENST00000353533.5:c.514-1G>T		p.X172_splice	ENST00000353533	NM_003010.3	172																																																																															
DNMT3A	1788	MSKCC	GRCh37	2	25470014	25470014	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	36	465	0	ENST00000264709.3:c.1028A>C	p.Lys343Thr	p.K343T	ENST00000264709	NM_175629.2	343	aAg/aCg																																																																														
MED12	9968	MSKCC	GRCh37	X	70349029	70349029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	216	683	1	ENST00000374080.3:c.3541A>G	p.Lys1181Glu	p.K1181E	ENST00000374080		1181	Aag/Gag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0037975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	354	797	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982416	201982417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	129	739	0	ENST00000359651.3:c.796dup	p.Ser266LysfsTer35	p.S266Kfs*35	ENST00000359651		265	-/A																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560248	95560248	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	95	444	1	ENST00000343455.3:c.5341G>T	p.Glu1781Ter	p.E1781*	ENST00000343455	NM_177438.2	1781	Gaa/Taa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324684	31324684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	121	549	0	ENST00000412585.2:c.124G>A	p.Gly42Arg	p.G42R	ENST00000412585	NM_005514.6	42	Ggg/Agg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197803	123197803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	67	281	1	ENST00000218089.9:c.1927G>A	p.Glu643Lys	p.E643K	ENST00000218089	NM_001042749.1	643	Gag/Aag																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0038012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	255	451	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443499	49443499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	106	441	1	ENST00000301067.7:c.3872G>A	p.Arg1291Gln	p.R1291Q	ENST00000301067	NM_003482.3	1291	cGg/cAg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647122	23647123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0038012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	98	674	0	ENST00000261584.4:c.744dup	p.Pro249SerfsTer8	p.P249Sfs*8	ENST00000261584	NM_024675.3	248	-/T																																																																														
EP300	2033	MSKCC	GRCh37	22	41513242	41513242	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0038012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	79	403	0	ENST00000263253.7:c.146A>G	p.Asn49Ser	p.N49S	ENST00000263253	NM_001429.3	49	aAc/aGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	471	768	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc																																																																														
ATRX	546	MSKCC	GRCh37	X	76972621	76972621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	53	600	0	ENST00000373344.5:c.120G>A	p.Met40Ile	p.M40I	ENST00000373344	NM_000489.3	40	atG/atA																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248636	10248636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	88	510	0	ENST00000340748.4:c.4117G>A	p.Asp1373Asn	p.D1373N	ENST00000340748		1373	Gac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	62	635	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	58	345	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	46	277	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	46	277	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	46	277	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
RHOA	387	MSKCC	GRCh37	3	49413009	49413009	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552758		P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	96	596	3	ENST00000418115.1:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000418115	NM_001664.2	5	cGg/cAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858783	9858783	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	28	222	0	ENST00000330684.3:c.2618G>C	p.Gly873Ala	p.G873A	ENST00000330684	NM_001134407.1	873	gGa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	61	534	0	ENST00000269305.4:c.97-1G>C		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
SYK	6850	MSKCC	GRCh37	9	93606368	93606368	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	70	693	1	ENST00000375746.1:c.188A>G	p.His63Arg	p.H63R	ENST00000375746	NM_001174167.1	63	cAc/cGc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	74	362	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780812	9780812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	77	665	1	ENST00000377346.4:c.1534C>T	p.Arg512Trp	p.R512W	ENST00000377346	NM_005026.3	512	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089510	27089514	+	frameshift_variant	Frame_Shift_Del	DEL	CTACC	CTACC	-			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	92	627	0	ENST00000324856.7:c.2467_2471del	p.Tyr823GlnfsTer47	p.Y823Qfs*47	ENST00000324856	NM_006015.4	822	aaCTACCcc/aacc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424741	49424741	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	93	681	0	ENST00000301067.7:c.13606C>T	p.Arg4536Ter	p.R4536*	ENST00000301067	NM_003482.3	4536	Cga/Tga																																																																														
BLM	641	MSKCC	GRCh37	15	91352417	91352417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	54	375	1	ENST00000355112.3:c.3802G>A	p.Glu1268Lys	p.E1268K	ENST00000355112	NM_000057.2	1268	Gaa/Aaa																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197085	26197085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	61	443	0	ENST00000356476.2:c.394C>A	p.Arg132Ser	p.R132S	ENST00000356476		132	Cgt/Agt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859687	151859687	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	82	338	0	ENST00000262189.6:c.10975G>T	p.Glu3659Ter	p.E3659*	ENST00000262189	NM_170606.2	3659	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	83	426	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0037803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	48	309	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285816	46285816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	53	474	0	ENST00000334344.6:c.5086del	p.Leu1696TyrfsTer5	p.L1696Yfs*5	ENST00000334344	NM_152641.2	1695	gCc/gc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3831203	3831225	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACTTTGTGGCCCCCAGGGAAGTC	ACTTTGTGGCCCCCAGGGAAGTC	-			P-0037803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	46	301	0	ENST00000262367.5:c.1656_1676+2del		p.X552_splice	ENST00000262367	NM_004380.2	552																																																																															
TP53	7157	MSKCC	GRCh37	17	7579335	7579336	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	54	681	0	ENST00000269305.4:c.351_352insC	p.Thr118HisfsTer31	p.T118Hfs*31	ENST00000269305	NM_001126112.2	117	-/C																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62325749	62325749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	55	723	0	ENST00000508582.2:c.3089T>C	p.Leu1030Pro	p.L1030P	ENST00000508582		1030	cTg/cCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	174	583	2	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	131	396	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479811	67479811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	158	557	0	ENST00000327367.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000327367	NM_005902.3	373	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	126	424	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273297	55273297	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	141	416	0	ENST00000275493.2:c.3620T>G	p.Phe1207Cys	p.F1207C	ENST00000275493	NM_005228.3	1207	tTt/tGt																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	186	537	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	169	617	2	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	168	568	2	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45007681	45007681	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	35	467	0	ENST00000558401.1:c.128T>G	p.Leu43Arg	p.L43R	ENST00000558401	NM_004048.2	43	cTg/cGg																																																																														
NF1	4763	MSKCC	GRCh37	17	29663722	29663722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	224	581	1	ENST00000358273.4:c.6217C>T	p.Leu2073Phe	p.L2073F	ENST00000358273	NM_001042492.2	2073	Ctt/Ttt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	170	578	0	ENST00000289153.2:c.3199G>T	p.Asp1067Tyr	p.D1067Y	ENST00000289153	NM_006219.2	1067	Gac/Tac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857127	9857127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	116	384	1	ENST00000330684.3:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000330684	NM_001134407.1	1425	tCg/tTg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	243	591	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	172	468	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495372	149495372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146614144		P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	123	567	1	ENST00000261799.4:c.3275C>T	p.Ser1092Leu	p.S1092L	ENST00000261799	NM_002609.3	1092	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101170	41101170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41279256		P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	32	650	0	ENST00000373198.4:c.1186G>A	p.Val396Ile	p.V396I	ENST00000373198	NM_133170.3	396	Gta/Ata																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011200	12011200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	142	434	0	ENST00000353533.5:c.607G>T	p.Glu203Ter	p.E203*	ENST00000353533	NM_003010.3	203	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591076	67591076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	108	293	0	ENST00000274335.5:c.1669C>T	p.Arg557Ter	p.R557*	ENST00000274335		557	Cga/Tga																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525883	148525883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	306	541	2	ENST00000320356.2:c.574G>A	p.Asp192Asn	p.D192N	ENST00000320356	NM_004456.4	192	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832265	72832265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	154	534	1	ENST00000268489.5:c.4316G>A	p.Arg1439Gln	p.R1439Q	ENST00000268489	NM_006885.3	1439	cGa/cAa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	211	666	2	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45007752	45007753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	165	483	0	ENST00000558401.1:c.204dup	p.Val69SerfsTer21	p.V69Sfs*21	ENST00000558401	NM_004048.2	67	gaa/gAaa																																																																														
CASP8	841	MSKCC	GRCh37	2	202131421	202131421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	141	507	2	ENST00000358485.4:c.389G>T	p.Arg130Ile	p.R130I	ENST00000358485	NM_001080125.1	130	aGa/aTa																																																																														
B2M	567	MSKCC	GRCh37	15	45003779	45003779	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	32	528	0	ENST00000558401.1:c.35T>G	p.Leu12Arg	p.L12R	ENST00000558401	NM_004048.2	12	cTa/cGa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251901	153251901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	43	561	0	ENST00000281708.4:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000281708	NM_033632.3	369	Gaa/Taa																																																																														
B2M	567	MSKCC	GRCh37	15	45007672	45007672	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	161	463	0	ENST00000558401.1:c.119C>A	p.Ser40Ter	p.S40*	ENST00000558401	NM_004048.2	40	tCa/tAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911435	134911435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	151	531	1	ENST00000398015.3:c.1900T>C	p.Tyr634His	p.Y634H	ENST00000398015	NM_004441.4	634	Tac/Cac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433373	49433373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	190	654	0	ENST00000301067.7:c.8074C>T	p.Arg2692Trp	p.R2692W	ENST00000301067	NM_003482.3	2692	Cgg/Tgg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027887	48027887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	30	350	0	ENST00000234420.5:c.2765G>A	p.Arg922Gln	p.R922Q	ENST00000234420	NM_000179.2	922	cGa/cAa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808966	1808966	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	96	492	0	ENST00000260795.2:c.2398A>G	p.Ser800Gly	p.S800G	ENST00000260795		800	Agc/Ggc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419841	41419841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	87	399	3	ENST00000373198.4:c.480C>A	p.Phe160Leu	p.F160L	ENST00000373198	NM_133170.3	160	ttC/ttA																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395710	45395710	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	186	478	1	ENST00000262160.6:c.424G>T	p.Glu142Ter	p.E142*	ENST00000262160	NM_005901.5	142	Gaa/Taa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412196	63412196	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	228	424	0	ENST00000330258.3:c.971C>A	p.Ser324Ter	p.S324*	ENST00000330258	NM_152424.3	324	tCa/tAa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59926518	59926518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	273	726	0	ENST00000259008.2:c.479G>T	p.Arg160Ile	p.R160I	ENST00000259008	NM_032043.2	160	aGa/aTa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998919	11998919	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	112	346	1	ENST00000353533.5:c.421G>T	p.Glu141Ter	p.E141*	ENST00000353533	NM_003010.3	141	Gaa/Taa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073637	8073637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	205	510	0	ENST00000377482.5:c.1022A>G	p.Tyr341Cys	p.Y341C	ENST00000377482	NM_018948.3	341	tAc/tGc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11210264	11210264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	34	556	0	ENST00000361445.4:c.4489T>C	p.Cys1497Arg	p.C1497R	ENST00000361445	NM_004958.3	1497	Tgc/Cgc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46527623	46527623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	231	539	0	ENST00000262741.5:c.742G>A	p.Gly248Arg	p.G248R	ENST00000262741	NM_003629.3	248	Ggg/Agg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248740	59248740	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	39	703	0	ENST00000371222.2:c.3G>T	p.Met1?	p.M1?	ENST00000371222	NM_002228.3	1	atG/atT																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176054937	176054937	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	136	497	0	ENST00000367669.3:c.1116T>G	p.Phe372Leu	p.F372L	ENST00000367669	NM_022457.5	372	ttT/ttG																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692997	89692997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	109	374	0	ENST00000371953.3:c.481A>G	p.Arg161Gly	p.R161G	ENST00000371953	NM_000314.4	161	Aga/Gga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711999	89711999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	137	288	0	ENST00000371953.3:c.617T>C	p.Phe206Ser	p.F206S	ENST00000371953	NM_000314.4	206	tTc/tCc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104356918	104356918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	193	572	0	ENST00000369902.3:c.778G>A	p.Glu260Lys	p.E260K	ENST00000369902	NM_016169.3	260	Gag/Aag																																																																														
LMO1	4004	MSKCC	GRCh37	11	8246247	8246247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	123	425	0	ENST00000335790.3:c.387C>A	p.Phe129Leu	p.F129L	ENST00000335790	NM_002315.2	129	ttC/ttA																																																																														
WT1	7490	MSKCC	GRCh37	11	32439136	32439136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	153	678	0	ENST00000332351.3:c.937G>A	p.Ala313Thr	p.A313T	ENST00000332351	NM_024426.4	313	Gcc/Acc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944790	71944790	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	37	618	1	ENST00000298229.2:c.2212+2T>C		p.X738_splice	ENST00000298229	NM_001567.3	738																																																																															
EED	8726	MSKCC	GRCh37	11	85977174	85977174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	126	466	2	ENST00000263360.6:c.776C>A	p.Ser259Tyr	p.S259Y	ENST00000263360	NM_003797.3	259	tCt/tAt																																																																														
SESN3	143686	MSKCC	GRCh37	11	94918552	94918552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	38	590	0	ENST00000536441.1:c.630T>G	p.Ser210Arg	p.S210R	ENST00000536441	NM_144665.3	210	agT/agG																																																																														
PGR	5241	MSKCC	GRCh37	11	100933474	100933474	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	88	316	1	ENST00000325455.5:c.1916T>G	p.Phe639Cys	p.F639C	ENST00000325455	NM_001202474.3	639	tTt/tGt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118850	115118850	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	184	486	0	ENST00000257566.3:c.491A>C	p.Lys164Thr	p.K164T	ENST00000257566	NM_016569.3	164	aAa/aCa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28588621	28588621	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	173	478	2	ENST00000241453.7:c.2827T>G	p.Leu943Val	p.L943V	ENST00000241453	NM_004119.2	943	Tta/Gta																																																																														
FLT3	2322	MSKCC	GRCh37	13	28644627	28644627	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	206	568	0	ENST00000241453.7:c.165+1G>A		p.X55_splice	ENST00000241453	NM_004119.2	55																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041120	29041120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	282	761	1	ENST00000282397.4:c.308G>A	p.Gly103Asp	p.G103D	ENST00000282397	NM_002019.4	103	gGc/gAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910767	32910767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	143	403	0	ENST00000380152.3:c.2275C>A	p.Leu759Ile	p.L759I	ENST00000380152		759	Ctt/Att																																																																														
RB1	5925	MSKCC	GRCh37	13	48919228	48919228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	72	201	1	ENST00000267163.4:c.393C>A	p.Phe131Leu	p.F131L	ENST00000267163	NM_000321.2	131	ttC/ttA																																																																														
RB1	5925	MSKCC	GRCh37	13	49039490	49039490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	186	541	0	ENST00000267163.4:c.2475G>T	p.Met825Ile	p.M825I	ENST00000267163	NM_000321.2	825	atG/atT																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281262	49281262	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	53	864	0	ENST00000282018.3:c.309T>G	p.Asn103Lys	p.N103K	ENST00000282018	NM_020377.2	103	aaT/aaG																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346835	73346835	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	22	241	0	ENST00000377767.4:c.1382A>C	p.Glu461Ala	p.E461A	ENST00000377767	NM_014953.3	461	gAa/gCa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093363	30093363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	201	584	0	ENST00000331968.5:c.1900C>A	p.Leu634Ile	p.L634I	ENST00000331968	NM_002742.2	634	Cta/Ata																																																																														
MGA	23269	MSKCC	GRCh37	15	42003288	42003288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	219	701	0	ENST00000219905.7:c.2825C>A	p.Ser942Tyr	p.S942Y	ENST00000219905	NM_001164273.1	942	tCt/tAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707910	43707910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	226	743	0	ENST00000382044.4:c.4971G>T	p.Lys1657Asn	p.K1657N	ENST00000382044	NM_001141980.1	1657	aaG/aaT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43738647	43738647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	241	604	0	ENST00000382044.4:c.2978G>T	p.Arg993Ile	p.R993I	ENST00000382044	NM_001141980.1	993	aGa/aTa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482863	67482863	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	156	458	0	ENST00000327367.4:c.1267A>C	p.Ser423Arg	p.S423R	ENST00000327367	NM_005902.3	423	Agt/Cgt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3841993	3841993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	180	444	1	ENST00000262367.5:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000262367	NM_004380.2	440	cGa/cAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81904512	81904512	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	103	390	0	ENST00000359376.3:c.620A>C	p.Lys207Thr	p.K207T	ENST00000359376	NM_002661.3	207	aAa/aCa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350695	89350695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	69	943	1	ENST00000301030.4:c.2255C>T	p.Ser752Phe	p.S752F	ENST00000301030	NM_001256183.1	752	tCt/tTt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89813065	89813065	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	143	541	0	ENST00000389301.3:c.3440A>C	p.Asp1147Ala	p.D1147A	ENST00000389301	NM_000135.2	1147	gAc/gCc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89818606	89818606	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	174	463	0	ENST00000389301.3:c.3006A>C	p.Glu1002Asp	p.E1002D	ENST00000389301	NM_000135.2	1002	gaA/gaC																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971372	15971372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	194	643	0	ENST00000268712.3:c.4577G>T	p.Arg1526Met	p.R1526M	ENST00000268712	NM_006311.3	1526	aGg/aTg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30322615	30322615	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	38	542	0	ENST00000322652.5:c.1628T>G	p.Phe543Cys	p.F543C	ENST00000322652	NM_015355.2	543	tTt/tGt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618830	37618830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	182	453	1	ENST00000447079.4:c.506G>A	p.Ser169Asn	p.S169N	ENST00000447079	NM_015083.1	169	aGc/aAc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243902	41243902	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	203	641	0	ENST00000357654.3:c.3646T>G	p.Leu1216Val	p.L1216V	ENST00000357654	NM_007294.3	1216	Tta/Gta																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256254	41256254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	170	435	0	ENST00000357654.3:c.326A>G	p.Lys109Arg	p.K109R	ENST00000357654	NM_007294.3	109	aAa/aGa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858223	59858223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	205	495	0	ENST00000259008.2:c.1772T>C	p.Phe591Ser	p.F591S	ENST00000259008	NM_032043.2	591	tTt/tCt																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626891	14626891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	46	630	0	ENST00000254322.2:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000254322	NM_006145.1	295	cGa/cAa																																																																														
ALK	238	MSKCC	GRCh37	2	29754974	29754974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	31	463	0	ENST00000389048.3:c.961C>A	p.Leu321Ile	p.L321I	ENST00000389048	NM_004304.4	321	Ctc/Atc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250088	39250088	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	260	712	0	ENST00000402219.2:c.1481T>G	p.Phe494Cys	p.F494C	ENST00000402219	NM_005633.3	494	tTt/tGt																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728733	190728733	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	105	326	1	ENST00000441310.2:c.2121A>C	p.Lys707Asn	p.K707N	ENST00000441310	NM_000534.4	707	aaA/aaC																																																																														
CASP8	841	MSKCC	GRCh37	2	202149929	202149929	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	41	636	0	ENST00000358485.4:c.1370A>C	p.Asp457Ala	p.D457A	ENST00000358485	NM_001080125.1	457	gAc/gCc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422537	225422537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	126	411	0	ENST00000264414.4:c.103G>A	p.Asp35Asn	p.D35N	ENST00000264414	NM_003590.4	35	Gac/Aac																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538308	9538308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	237	619	1	ENST00000353224.5:c.1690G>A	p.Val564Met	p.V564M	ENST00000353224	NM_177990.2	564	Gtg/Atg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538359	9538359	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	166	540	0	ENST00000353224.5:c.1639A>G	p.Thr547Ala	p.T547A	ENST00000353224	NM_177990.2	547	Act/Gct																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31385039	31385039	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	41	598	1	ENST00000328111.2:c.1424A>C	p.Gln475Pro	p.Q475P	ENST00000328111	NM_006892.3	475	cAg/cCg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	161	552	0	ENST00000373198.4:c.1637G>T	p.Arg546Leu	p.R546L	ENST00000373198	NM_133170.3	546	cGg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101174	41101174	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	124	637	0	ENST00000373198.4:c.1182A>C	p.Glu394Asp	p.E394D	ENST00000373198	NM_133170.3	394	gaA/gaC																																																																														
EP300	2033	MSKCC	GRCh37	22	41574576	41574576	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	221	739	2	ENST00000263253.7:c.6861T>G	p.Asn2287Lys	p.N2287K	ENST00000263253	NM_001429.3	2287	aaT/aaG																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164310	47164310	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	161	424	0	ENST00000409792.3:c.1816A>C	p.Asn606His	p.N606H	ENST00000409792	NM_014159.6	606	Aat/Cat																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610660	52610660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	35	545	1	ENST00000394830.3:c.3513C>A	p.Phe1171Leu	p.F1171L	ENST00000394830	NM_018313.4	1171	ttC/ttA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89176383	89176383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	110	379	0	ENST00000336596.2:c.113T>C	p.Ile38Thr	p.I38T	ENST00000336596	NM_005233.5	38	aTt/aCt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541967	187541967	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	226	582	0	ENST00000441802.2:c.5773G>C	p.Glu1925Gln	p.E1925Q	ENST00000441802	NM_005245.3	1925	Gag/Cag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630731	187630731	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	50	692	0	ENST00000441802.2:c.251A>G	p.Lys84Arg	p.K84R	ENST00000441802	NM_005245.3	84	aAa/aGa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526439	31526439	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	54	860	0	ENST00000344624.3:c.601A>C	p.Ser201Arg	p.S201R	ENST00000344624		201	Agt/Cgt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38959416	38959416	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	20	365	0	ENST00000357387.3:c.2059A>C	p.Asn687His	p.N687H	ENST00000357387	NM_152756.3	687	Aat/Cat																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178044	56178044	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	32	403	0	ENST00000399503.3:c.3017T>G	p.Leu1006Arg	p.L1006R	ENST00000399503	NM_005921.1	1006	cTt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112154938	112154938	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	209	609	0	ENST00000257430.4:c.1209A>C	p.Glu403Asp	p.E403D	ENST00000257430	NM_000038.5	403	gaA/gaC																																																																														
APC	324	MSKCC	GRCh37	5	112176017	112176017	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	115	340	1	ENST00000257430.4:c.4726G>T	p.Glu1576Ter	p.E1576*	ENST00000257430	NM_000038.5	1576	Gaa/Taa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120633	94120633	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	124	524	0	ENST00000369303.4:c.418G>T	p.Glu140Ter	p.E140*	ENST00000369303	NM_004440.3	140	Gaa/Taa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109319879	109319879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	178	642	0	ENST00000436639.2:c.809C>A	p.Ser270Tyr	p.S270Y	ENST00000436639	NM_014454.2	270	tCt/tAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609778	117609778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	190	613	0	ENST00000368508.3:c.6921G>T	p.Lys2307Asn	p.K2307N	ENST00000368508	NM_002944.2	2307	aaG/aaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642492	117642492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	187	695	0	ENST00000368508.3:c.5707G>T	p.Asp1903Tyr	p.D1903Y	ENST00000368508	NM_002944.2	1903	Gac/Tac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663633	117663633	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	225	579	1	ENST00000368508.3:c.4599A>C	p.Lys1533Asn	p.K1533N	ENST00000368508	NM_002944.2	1533	aaA/aaC																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508373	106508373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	17	352	0	ENST00000359195.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000359195	NM_002649.2	123	Cgc/Tgc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148515072	148515072	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	368	569	0	ENST00000320356.2:c.1137A>C	p.Glu379Asp	p.E379D	ENST00000320356	NM_004456.4	379	gaA/gaC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860075	151860075	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	228	447	0	ENST00000262189.6:c.10587T>G	p.Phe3529Leu	p.F3529L	ENST00000262189	NM_170606.2	3529	ttT/ttG																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020361	69020361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	30	495	2	ENST00000288368.4:c.2733G>T	p.Lys911Asn	p.K911N	ENST00000288368	NM_024870.2	911	aaG/aaT																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028080	69028080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	167	604	0	ENST00000288368.4:c.3239G>T	p.Arg1080Ile	p.R1080I	ENST00000288368	NM_024870.2	1080	aGa/aTa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970968	70970968	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	103	723	0	ENST00000276594.2:c.1293A>C	p.Lys431Asn	p.K431N	ENST00000276594	NM_024504.3	431	aaA/aaC																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70971015	70971015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	271	720	0	ENST00000276594.2:c.1246G>T	p.Asp416Tyr	p.D416Y	ENST00000276594	NM_024504.3	416	Gat/Tat																																																																														
AGO2	27161	MSKCC	GRCh37	8	141559216	141559216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	26	544	0	ENST00000220592.5:c.1585T>C	p.Tyr529His	p.Y529H	ENST00000220592	NM_012154.3	529	Tac/Cac																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249847	110249847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	35	652	0	ENST00000374672.4:c.828G>T	p.Lys276Asn	p.K276N	ENST00000374672	NM_004235.4	276	aaG/aaT																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912136	127912136	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	81	412	0	ENST00000373547.4:c.734A>C	p.Lys245Thr	p.K245T	ENST00000373547	NM_002721.4	245	aAa/aCa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227998	53227998	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	177	541	0	ENST00000375401.3:c.2316del	p.Trp773GlyfsTer22	p.W773Gfs*22	ENST00000375401	NM_004187.3	772	acC/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0037818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	47	386	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	212	906	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																														
CBFB	865	MSKCC	GRCh37	16	67070631	67070631	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	139	235	0	ENST00000412916.2:c.255T>A	p.Tyr85Ter	p.Y85*	ENST00000412916		85	taT/taA																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58734016	58734016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	140	554	0	ENST00000305921.3:c.1074G>C	p.Trp358Cys	p.W358C	ENST00000305921	NM_003620.3	358	tgG/tgC																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58734074	58734074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	127	718	0	ENST00000305921.3:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000305921	NM_003620.3	378	Gaa/Aaa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58734107	58734107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	115	758	0	ENST00000305921.3:c.1165G>A	p.Asp389Asn	p.D389N	ENST00000305921	NM_003620.3	389	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0037819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	196	639	0	ENST00000269305.4:c.743_744delinsTT	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGG/cTT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0037858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	135	659	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0037858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	47	224	1	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27099124	27099124	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0037858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	76	354	1	ENST00000324856.7:c.3539+1G>T		p.X1180_splice	ENST00000324856	NM_006015.4	1180																																																																															
ATRX	546	MSKCC	GRCh37	X	76778812	76778818	+	frameshift_variant	Frame_Shift_Del	DEL	GAATCAT	GAATCAT	-			P-0037858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	65	414	0	ENST00000373344.5:c.6761_6767del	p.His2254LeufsTer11	p.H2254Lfs*11	ENST00000373344	NM_000489.3	2254	cATGATTCt/ct																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185195	123185195	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	20	443	0	ENST00000218089.9:c.1147G>T	p.Glu383Ter	p.E383*	ENST00000218089	NM_001042749.1	383	Gaa/Taa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	33	230	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	174	755	0	ENST00000269305.4:c.428T>G	p.Val143Gly	p.V143G	ENST00000269305	NM_001126112.2	143	gTg/gGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	141	547	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0038013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	1956	320	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MGA	23269	MSKCC	GRCh37	15	41988352	41988353	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0038013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	126	385	0	ENST00000219905.7:c.1145_1146del	p.Lys382ArgfsTer6	p.K382Rfs*6	ENST00000219905	NM_001164273.1	382	AAa/a																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671216	30671216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	118	573	0	ENST00000376406.3:c.5661C>G	p.Asn1887Lys	p.N1887K	ENST00000376406	NM_014641.2	1887	aaC/aaG																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552921	106552921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0038013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	172	618	0	ENST00000369096.4:c.886C>T	p.Arg296Trp	p.R296W	ENST00000369096	NM_001198.3	296	Cgg/Tgg																																																																														
TEK	7010	MSKCC	GRCh37	9	27169513	27169513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0038013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	196	417	0	ENST00000380036.4:c.514G>C	p.Asp172His	p.D172H	ENST00000380036	NM_000459.3	172	Gat/Cat																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0007702-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	302	495	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0007702-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	182	542	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	9	701	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	27	732	0	ENST00000269305.4:c.824G>C	p.Cys275Ser	p.C275S	ENST00000269305	NM_001126112.2	275	tGt/tCt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591878	48591883	+	inframe_deletion	In_Frame_Del	DEL	TGTTAC	TGTTAC	-			P-0023743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	17	618	1	ENST00000342988.3:c.1045_1050del	p.Thr349_Val350del	p.T349_V350del	ENST00000342988	NM_005359.5	347	atTGTTACt/att																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	353	448	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115712	8115712	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	62	253	0	ENST00000346208.3:c.1058C>A	p.Pro353His	p.P353H	ENST00000346208		353	cCc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953965	32953965	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	51	342	1	ENST00000380152.3:c.9032T>G	p.Leu3011Arg	p.L3011R	ENST00000380152		3011	cTt/cGt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603622	48604644	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAAAATTGAACTGTGTGCCAGGTTTCACACTGATGGGGAATTTTTTACTGCAGAGTTAAACTCCTGACTATAGACTTTTATGATGGAAACACGTGGCACCCATCTTCCACGTCTGAAGGCATAACTAGTGATTCATTCAACCCCTGTTCTTAACCTCTTCAGTGTGGTAAGCAAATCACACTGGCTAAGAAAACTGCAGTGGCCCTGCAGGTTTCTCTACAGTACATGCAAATTCCTCCCATTAGTTTCATTGTAATATTGATGAATGCAGATGGACTATATGACTGTATGTTCTGACTGGAAAATTAGATGCAGTCTCCATTGTGACTTATGTTCAGGAGTTTACAATTTAGAGGTAGATTAGGCATATTCATTGAGAGAATTTGATTTTTTAAAATTTGGGGTGATACCATTAATTTGCTGGTTTCAGTGTTATAAACATGCTTTTACTGAAGAATCCAGAACTATTATTAAGTTTCATATTCTCATCAGTTGCCACCACTGAGTAATAGTGTATTACTCTGTTACACTTTGAAATTGAGAGAGAGACTTCATCTCGGTCATCTAAGAGGTCTTAGTGGAACTAAGAATATTAACTGCTTCATTATTAGTTATGTCTTATTCTGAACTAGGCTGTTTAGACAGTAAGGTTTTTAGAAGCAACCTGTGGACACGCACTACCTCTTAAAAACAAGTTGTTTCTTATCCCTTCACCTCCACTTCTAAAGAAAAAAATAGGTGAGGTGTTGGTGGATTGTGGTAATTTACTTTATAATTGGTTGTAGCTAGAAGACACATGTGAAATGTAAAGTTCCTTAACCAAAAGTGTGCAGCTTGTTGATAAAGTTTAGATCTACTGTTACTTCTTGGCACTTTAGCAGAGAAGTTATATGCTGAGGAGAATGAAATACAGAAAGCTGGTCACTTGATTAATTTAGAATGTAGGGAGGATGGGAAGAGATCACCCTGTCCCTCTGATGTCTTCCAAATCTTTTCTGTTAGGTCTGTCAGCTGCTGCTGG	GGTAAAATTGAACTGTGTGCCAGGTTTCACACTGATGGGGAATTTTTTACTGCAGAGTTAAACTCCTGACTATAGACTTTTATGATGGAAACACGTGGCACCCATCTTCCACGTCTGAAGGCATAACTAGTGATTCATTCAACCCCTGTTCTTAACCTCTTCAGTGTGGTAAGCAAATCACACTGGCTAAGAAAACTGCAGTGGCCCTGCAGGTTTCTCTACAGTACATGCAAATTCCTCCCATTAGTTTCATTGTAATATTGATGAATGCAGATGGACTATATGACTGTATGTTCTGACTGGAAAATTAGATGCAGTCTCCATTGTGACTTATGTTCAGGAGTTTACAATTTAGAGGTAGATTAGGCATATTCATTGAGAGAATTTGATTTTTTAAAATTTGGGGTGATACCATTAATTTGCTGGTTTCAGTGTTATAAACATGCTTTTACTGAAGAATCCAGAACTATTATTAAGTTTCATATTCTCATCAGTTGCCACCACTGAGTAATAGTGTATTACTCTGTTACACTTTGAAATTGAGAGAGAGACTTCATCTCGGTCATCTAAGAGGTCTTAGTGGAACTAAGAATATTAACTGCTTCATTATTAGTTATGTCTTATTCTGAACTAGGCTGTTTAGACAGTAAGGTTTTTAGAAGCAACCTGTGGACACGCACTACCTCTTAAAAACAAGTTGTTTCTTATCCCTTCACCTCCACTTCTAAAGAAAAAAATAGGTGAGGTGTTGGTGGATTGTGGTAATTTACTTTATAATTGGTTGTAGCTAGAAGACACATGTGAAATGTAAAGTTCCTTAACCAAAAGTGTGCAGCTTGTTGATAAAGTTTAGATCTACTGTTACTTCTTGGCACTTTAGCAGAGAAGTTATATGCTGAGGAGAATGAAATACAGAAAGCTGGTCACTTGATTAATTTAGAATGTAGGGAGGATGGGAAGAGATCACCCTGTCCCTCTGATGTCTTCCAAATCTTTTCTGTTAGGTCTGTCAGCTGCTGCTGG	-			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	81	0	0	ENST00000342988.3:c.1447+476_1466del		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149260186	149260186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	272	496	1	ENST00000360632.3:c.707G>A	p.Arg236Gln	p.R236Q	ENST00000360632	NM_015472.4	236	cGg/cAg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821404	32821404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	268	595	0	ENST00000354258.4:c.190T>G	p.Ser64Ala	p.S64A	ENST00000354258	NM_000593.5	64	Tct/Gct																																																																														
BCOR	54880	MSKCC	GRCh37	X	39935769	39935769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	194	508	0	ENST00000378444.4:c.103G>C	p.Asp35His	p.D35H	ENST00000378444	NM_001123385.1	35	Gat/Cat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045946	47045946	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	252	567	0	ENST00000329236.7:c.2507A>C	p.Tyr836Ser	p.Y836S	ENST00000329236	NM_001204466.1	836	tAc/tCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	253	770	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0036881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	132	440	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	123	470	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MITF	4286	MSKCC	GRCh37	3	69990481	69990481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201247895		P-0036881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	46	361	0	ENST00000352241.4:c.761C>T	p.Thr254Met	p.T254M	ENST00000352241	NM_198159.2	254	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112090657	112090657	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs145945630		P-0036881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	104	390	0	ENST00000257430.4:c.70C>T	p.Arg24Ter	p.R24*	ENST00000257430	NM_000038.5	24	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0036881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			830	248	916	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851561	63851561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	150	630	0	ENST00000279873.7:c.2339G>A	p.Arg780Gln	p.R780Q	ENST00000279873	NM_032199.2	780	cGa/cAa																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43745205	43745205	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0036881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	143	537	0	ENST00000523873.1:c.119-1G>A		p.X40_splice	ENST00000523873		40																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	24	284	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
AR	367	MSKCC	GRCh37	X	66765082	66765082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	19	323	0	ENST00000374690.3:c.94G>A	p.Glu32Lys	p.E32K	ENST00000374690	NM_000044.3	32	Gaa/Aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575160	48575181	+	frameshift_variant	Frame_Shift_Del	DEL	GTTTGACTTAAAATGTGATAGT	GTTTGACTTAAAATGTGATAGT	-			P-0036919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	23	300	0	ENST00000342988.3:c.356_377del	p.Phe119SerfsTer3	p.F119Sfs*3	ENST00000342988	NM_005359.5	118	gcGTTTGACTTAAAATGTGATAGT/gc																																																																														
BCL6	604	MSKCC	GRCh37	3	187446911	187446911	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	31	319	0	ENST00000232014.4:c.1282C>G	p.Pro428Ala	p.P428A	ENST00000232014	NM_001130845.1	428	Cca/Gca																																																																														
EP300	2033	MSKCC	GRCh37	22	41531904	41531904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	151	404	0	ENST00000263253.7:c.1616C>T	p.Ser539Phe	p.S539F	ENST00000263253	NM_001429.3	539	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	374	728	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720808	89720808	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0037738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	75	313	0	ENST00000371953.3:c.959T>G	p.Leu320Ter	p.L320*	ENST00000371953	NM_000314.4	320	tTa/tGa																																																																														
MAX	4149	MSKCC	GRCh37	14	65543324	65543324	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0037738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	94	619	0	ENST00000358664.4:c.353C>G	p.Ser118Ter	p.S118*	ENST00000358664	NM_002382.4	118	tCa/tGa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100944	41100944	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	118	643	0	ENST00000373198.4:c.1412T>A	p.Met471Lys	p.M471K	ENST00000373198	NM_133170.3	471	aTg/aAg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868962	117868962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	151	381	0	ENST00000297338.2:c.737C>T	p.Pro246Leu	p.P246L	ENST00000297338	NM_006265.2	246	cCt/cTt																																																																														
TET2	54790	MSKCC	GRCh37	4	106196261	106196261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	20	292	0	ENST00000380013.4:c.4594C>T	p.Gln1532Ter	p.Q1532*	ENST00000380013	NM_001127208.2	1532	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	53	491	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	29	534	0	ENST00000342988.3:c.1051G>C	p.Asp351His	p.D351H	ENST00000342988	NM_005359.5	351	Gat/Cat																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45871940	45871940	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142462393		P-0037742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	157	626	0	ENST00000391945.4:c.308C>T	p.Pro103Leu	p.P103L	ENST00000391945	NM_000400.3	103	cCg/cTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916205	9916205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	125	481	1	ENST00000330684.3:c.2084G>A	p.Arg695Gln	p.R695Q	ENST00000330684	NM_001134407.1	695	cGg/cAg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528215	103528215	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	84	335	0	ENST00000355739.4:c.3523A>C	p.Lys1175Gln	p.K1175Q	ENST00000355739	NM_000123.3	1175	Aaa/Caa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443861	52443861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	161	610	0	ENST00000460680.1:c.34C>T	p.Pro12Ser	p.P12S	ENST00000460680	NM_004656.3	12	Cca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579494	7579494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0037743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	77	815	0	ENST00000269305.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000269305	NM_001126112.2	65	Aga/Tga																																																																														
BLM	641	MSKCC	GRCh37	15	91303964	91303964	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	57	613	0	ENST00000355112.3:c.1361A>T	p.Asn454Ile	p.N454I	ENST00000355112	NM_000057.2	454	aAt/aTt																																																																														
AKT2	208	MSKCC	GRCh37	19	40740974	40740974	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	58	801	0	ENST00000392038.2:c.1344C>G	p.Ile448Met	p.I448M	ENST00000392038	NM_001626.4	448	atC/atG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023447	27023447	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	79	528	0	ENST00000324856.7:c.553C>T	p.Gln185Ter	p.Q185*	ENST00000324856	NM_006015.4	185	Cag/Tag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983094	201983094	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	117	693	0	ENST00000359651.3:c.943T>C	p.Trp315Arg	p.W315R	ENST00000359651		315	Tgg/Cgg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984428	201984429	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	104	657	0	ENST00000359651.3:c.1094dup	p.Val366GlyfsTer105	p.V366Gfs*105	ENST00000359651		365	gag/gAag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424541	49425125	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	AGGGACAGCTCCTACAAGGGGCAAGATGACAAAGTTCAAAACCTGCAGCGTTTGCATCGCTGTCTTGCACAGCTGGGGGACAGGGTGCCCCCTATCCTGGGATGGGACCAGGGGGACTGTCTCCTGGGGGGTCACCTGTTTCAGCTGTTTCAGCAAGGCCTCGCTGGCCCTGACCCCGTCCTCCTTCCGCAGCTTCTTTCGGGAGCTCACCAACCTGTCGCTTGCCTTCTGTACCCGCTTGGGCTTCGGTGTCAAAGGCTTCCTTGCTGCTGCATCCTAAGCCAAATAAGCCCATTGAAGGCTGCTACCCTCCTCCTCAGAGCCCTCATCTCTTCTGTCTGACCCAGGCTCACTCATTCTGCCCCCCGCTGGCTCTAGGACCCACTCTACCTGCTCCACTCTACTCAGAGTACTCACCTCCTTGTTGCTGGGGGTACCCTGTAGTTTCTGCTCCAGCCCAGCCAGCTTGCTGTCAATGTGCCCGTTGATCTCAGCTCGCAGCCCCTCGGACCCCCGCCCAGTGCTGAGTTGCACATTCTTTGCCCGGAGTAGCTTCTGCAAGAGCAGATGCCCAGCTTCTGAGCG	AGGGACAGCTCCTACAAGGGGCAAGATGACAAAGTTCAAAACCTGCAGCGTTTGCATCGCTGTCTTGCACAGCTGGGGGACAGGGTGCCCCCTATCCTGGGATGGGACCAGGGGGACTGTCTCCTGGGGGGTCACCTGTTTCAGCTGTTTCAGCAAGGCCTCGCTGGCCCTGACCCCGTCCTCCTTCCGCAGCTTCTTTCGGGAGCTCACCAACCTGTCGCTTGCCTTCTGTACCCGCTTGGGCTTCGGTGTCAAAGGCTTCCTTGCTGCTGCATCCTAAGCCAAATAAGCCCATTGAAGGCTGCTACCCTCCTCCTCAGAGCCCTCATCTCTTCTGTCTGACCCAGGCTCACTCATTCTGCCCCCCGCTGGCTCTAGGACCCACTCTACCTGCTCCACTCTACTCAGAGTACTCACCTCCTTGTTGCTGGGGGTACCCTGTAGTTTCTGCTCCAGCCCAGCCAGCTTGCTGTCAATGTGCCCGTTGATCTCAGCTCGCAGCCCCTCGGACCCCCGCCCAGTGCTGAGTTGCACATTCTTTGCCCGGAGTAGCTTCTGCAAGAGCAGATGCCCAGCTTCTGAGCG	-			P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	63	631	0	ENST00000301067.7:c.13363_13682del		p.X4455_splice	ENST00000301067	NM_003482.3	4455	CGCTCAGAAGCTGGGCATCTGCTCTTGCAGAAGCTACTCCGGGCAAAGAATGTGCAACTCAGCACTGGGCGGGGGTCCGAGGGGCTGCGAGCTGAGATCAACGGGCACATTGACAGCAAGCTGGCTGGGCTGGAGCAGAAACTACAGGGTACCCCCAGCAACAAGGAGGTGAGTACTCTGAGTAGAGTGGAGCAGGTAGAGTGGGTCCTAGAGCCAGCGGGGGGCAGAATGAGTGAGCCTGGGTCAGACAGAAGAGATGAGGGCTCTGAGGAGGAGGGTAGCAGCCTTCAATGGGCTTATTTGGCTTAGGATGCAGCAGCAAGGAAGCCTTTGACACCGAAGCCCAAGCGGGTACAGAAGGCAAGCGACAGGTTGGTGAGCTCCCGAAAGAAGCTGCGGAAGGAGGACGGGGTCAGGGCCAGCGAGGCCTTGCTGAAACAGCTGAAACAGGTGACCCCCCAGGAGACAGTCCCCCTGGTCCCATCCCAGGATAGGGGGCACCCTGTCCCCCAGCTGTGCAAGACAGCGATGCAAACGCTGCAGGTTTTGAACTTTGTCATCTTGCCCCTTGTAGGAGCTGTCCCTg/g																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	88	557	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
MGA	23269	MSKCC	GRCh37	15	42052633	42052633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	75	474	0	ENST00000219905.7:c.7304G>A	p.Arg2435Gln	p.R2435Q	ENST00000219905	NM_001164273.1	2435	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	63	697	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028657	12028657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	59	411	0	ENST00000353533.5:c.860G>A	p.Arg287His	p.R287H	ENST00000353533	NM_003010.3	287	cGc/cAc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085659	16085659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	75	641	0	ENST00000281043.3:c.835G>A	p.Val279Met	p.V279M	ENST00000281043	NM_005378.4	279	Gtg/Atg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728486	190728486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	52	366	0	ENST00000441310.2:c.1874C>T	p.Thr625Ile	p.T625I	ENST00000441310	NM_000534.4	625	aCt/aTt																																																																														
CASP8	841	MSKCC	GRCh37	2	202150003	202150003	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	78	623	0	ENST00000358485.4:c.1444C>T	p.Gln482Ter	p.Q482*	ENST00000358485	NM_001080125.1	482	Cag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52696169	52696169	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	78	625	1	ENST00000394830.3:c.508C>T	p.Gln170Ter	p.Q170*	ENST00000394830	NM_018313.4	170	Cag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356269	66356269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200754741		P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	50	560	0	ENST00000273854.3:c.1228G>A	p.Gly410Ser	p.G410S	ENST00000273854	NM_004439.5	410	Ggt/Agt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508580	106508580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	47	449	0	ENST00000359195.3:c.574G>A	p.Asp192Asn	p.D192N	ENST00000359195	NM_002649.2	192	Gac/Aac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151844647	151845669	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCGGGCATGGTAGCGCAAGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGGGAACTGAGATCGCGCCATTGCAGTCCAGCCTGTGCAACAAAAGAGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAGGTCCCCAATGCAAATGACAGGCAACCTTTATCTACAAATCATTCTCGGATTTACCTCACCAACTCGTATGTTCAAAGATATATTGATTATGAAAGTGTTTAGACAACTGTATAGCAAAGAGAGCAAGGTGTGAGAACACAAACATTGGCATTTGTAAATGAAAAATACACATTATAAAATATAAAACTAACATGAGACAAACATGGAAAATTGACAAAATACATTCATTAGCCTGACATCAGAGTAAGTAGCACTGCACAGCATGTGAACGGCAGACGTTACCTTTAGGTGAGATGTCACTTAGAACCAGGTCTTCATGGCCTTGTTCCACAATCCTGATGACAAACACTGGGCGCCCATCCTTCTCCTCAATGGAGCACAGGTAGCGGCAGCGCCTATTGGCATAGCGAGTGCTCCAGTACAGCCGGCTGGCTTCATAGCCCACAGGGAAGAGTGCTTTAGGAGAATGGAATGCTTGCATCTGCTGTGGAAGCAGCTGACCAATTGTGTGGAAGATGAGGCTACCCACGCGAAAGGTATGGTCCCGTTCTCCTCGTTGCACGATGCTAGCAATCTGTCGCACCTCATCACGCTGAACATAGACCCTCCTGAAGACTGCAAAGTAACTTAATTCTTGCTCATGAATTCCCTTTGGTTTGTGCATGGGGCAAAGCATAGTTTTGTCCTTAAAAAACATGCATTGTGCTTTAATGGCGCAAGTGAAGTGATAAATGTTGGTGCATCGAAATCTGTGGCATCCACTAGTGGCACCCGTCTTGTGACAGAAGACACATTTCATTTGTAGGCCTCTCCTCAGAGCTAGCTCCACATTTA	CCGGGCATGGTAGCGCAAGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGGGAACTGAGATCGCGCCATTGCAGTCCAGCCTGTGCAACAAAAGAGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAGGTCCCCAATGCAAATGACAGGCAACCTTTATCTACAAATCATTCTCGGATTTACCTCACCAACTCGTATGTTCAAAGATATATTGATTATGAAAGTGTTTAGACAACTGTATAGCAAAGAGAGCAAGGTGTGAGAACACAAACATTGGCATTTGTAAATGAAAAATACACATTATAAAATATAAAACTAACATGAGACAAACATGGAAAATTGACAAAATACATTCATTAGCCTGACATCAGAGTAAGTAGCACTGCACAGCATGTGAACGGCAGACGTTACCTTTAGGTGAGATGTCACTTAGAACCAGGTCTTCATGGCCTTGTTCCACAATCCTGATGACAAACACTGGGCGCCCATCCTTCTCCTCAATGGAGCACAGGTAGCGGCAGCGCCTATTGGCATAGCGAGTGCTCCAGTACAGCCGGCTGGCTTCATAGCCCACAGGGAAGAGTGCTTTAGGAGAATGGAATGCTTGCATCTGCTGTGGAAGCAGCTGACCAATTGTGTGGAAGATGAGGCTACCCACGCGAAAGGTATGGTCCCGTTCTCCTCGTTGCACGATGCTAGCAATCTGTCGCACCTCATCACGCTGAACATAGACCCTCCTGAAGACTGCAAAGTAACTTAATTCTTGCTCATGAATTCCCTTTGGTTTGTGCATGGGGCAAAGCATAGTTTTGTCCTTAAAAAACATGCATTGTGCTTTAATGGCGCAAGTGAAGTGATAAATGTTGGTGCATCGAAATCTGTGGCATCCACTAGTGGCACCCGTCTTGTGACAGAAGACACATTTCATTTGTAGGCCTCTCCTCAGAGCTAGCTCCACATTTA	-			P-0037746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	31	1	0	ENST00000262189.6:c.13343_13894+471del		p.X4448_splice	ENST00000262189	NM_170606.2	4448																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	129	400	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096580	178096580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	71	320	0	ENST00000397062.3:c.751G>A	p.Glu251Lys	p.E251K	ENST00000397062	NM_006164.4	251	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948083	178948083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	40	284	0	ENST00000263967.3:c.2855T>C	p.Val952Ala	p.V952A	ENST00000263967	NM_006218.2	952	gTg/gCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	124	391	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156609	2156609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	55	736	0	ENST00000434045.2:c.313G>T	p.Gly105Cys	p.G105C	ENST00000434045	NM_001127598.1	105	Ggc/Tgc																																																																														
BTK	695	MSKCC	GRCh37	X	100626628	100626628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	55	379	0	ENST00000308731.7:c.302C>A	p.Pro101His	p.P101H	ENST00000308731	NM_000061.2	101	cCc/cAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098795	47098795	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	64	834	0	ENST00000409792.3:c.6479del	p.Pro2160ArgfsTer88	p.P2160Rfs*88	ENST00000409792	NM_014159.6	2160	cCg/cg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47087982	47087982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	40	418	0	ENST00000409792.3:c.7093C>T	p.Gln2365Ter	p.Q2365*	ENST00000409792	NM_014159.6	2365	Cag/Tag																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29195912	29195912	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	77	859	0	ENST00000240100.2:c.686C>G	p.Ser229Cys	p.S229C	ENST00000240100	NM_001394.6	229	tCc/tGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045547	47045547	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	56	678	0	ENST00000329236.7:c.2280C>A	p.Tyr760Ter	p.Y760*	ENST00000329236	NM_001204466.1	760	taC/taA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	209	626	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																														
ATM	472	MSKCC	GRCh37	11	108199908	108199908	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	76	313	0	ENST00000278616.4:c.7250T>C	p.Leu2417Pro	p.L2417P	ENST00000278616	NM_000051.3	2417	cTg/cCg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28895599	28895599	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0037765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	104	425	0	ENST00000282397.4:c.3174+1G>A		p.X1058_splice	ENST00000282397	NM_002019.4	1058																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732283	74732283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	35	342	0	ENST00000359995.5:c.626C>A	p.Pro209His	p.P209H	ENST00000359995	NM_001195427.1	209	cCc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0037767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	39	580	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396746	396746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	26	579	0	ENST00000262320.3:c.280G>T	p.Asp94Tyr	p.D94Y	ENST00000262320	NM_003502.3	94	Gat/Tat																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94209538	94209538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	46	362	0	ENST00000323929.3:c.576G>A	p.Met192Ile	p.M192I	ENST00000323929	NM_005591.3	192	atG/atA																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434736	99434736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	379	686	0	ENST00000268035.6:c.823C>T	p.Arg275Cys	p.R275C	ENST00000268035	NM_000875.3	275	Cgc/Tgc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2107113	2107113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	121	752	1	ENST00000219476.3:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000219476	NM_000548.3	261	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	201	622	1	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
AURKB	9212	MSKCC	GRCh37	17	8111076	8111076	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201438176		P-0037777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	232	743	3	ENST00000585124.1:c.131G>A	p.Arg44His	p.R44H	ENST00000585124	NM_004217.3	44	cGc/cAc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119719	17119719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	92	568	0	ENST00000285071.4:c.1275G>T	p.Gln425His	p.Q425H	ENST00000285071	NM_144997.5	425	caG/caT																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	71	624	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
CASP8	841	MSKCC	GRCh37	2	202149542	202149542	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	61	483	0	ENST00000358485.4:c.983C>G	p.Ala328Gly	p.A328G	ENST00000358485	NM_001080125.1	328	gCt/gGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221725	55221725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138847501		P-0037777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	56	451	0	ENST00000275493.2:c.769G>A	p.Glu257Lys	p.E257K	ENST00000275493	NM_005228.3	257	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0023410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	109	828	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264398	16264398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	48	911	0	ENST00000375759.3:c.10601C>T	p.Ala3534Val	p.A3534V	ENST00000375759	NM_015001.2	3534	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577521	7577523	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0023410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	123	870	1	ENST00000269305.4:c.758_760del	p.Thr253del	p.T253del	ENST00000269305	NM_001126112.2	253	aCCAtc/atc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821446	32821446	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	63	871	0	ENST00000354258.4:c.148C>A	p.Pro50Thr	p.P50T	ENST00000354258	NM_000593.5	50	Ccc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0036703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	201	255	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056104	26056104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	225	474	0	ENST00000343677.2:c.553G>A	p.Ala185Thr	p.A185T	ENST00000343677	NM_005319.3	185	Gct/Act																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	84	797	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	35	613	1	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																														
IGF1	3479	MSKCC	GRCh37	12	102811758	102811758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	118	773	0	ENST00000307046.8:c.426G>T	p.Lys142Asn	p.K142N	ENST00000307046	NM_001111285.1	142	aaG/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	72	365	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	36	637	3	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509637	106509637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	171	573	0	ENST00000359195.3:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000359195	NM_002649.2	544	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	119	631	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
TET1	80312	MSKCC	GRCh37	10	70333143	70333143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	47	824	0	ENST00000373644.4:c.1048G>A	p.Glu350Lys	p.E350K	ENST00000373644	NM_030625.2	350	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285327	212285327	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143134749		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	48	486	1	ENST00000342788.4:c.2974C>T	p.Arg992Cys	p.R992C	ENST00000342788	NM_005235.2	992	Cgt/Tgt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	30	626	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																														
TET1	80312	MSKCC	GRCh37	10	70404538	70404538	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	65	441	0	ENST00000373644.4:c.2052A>C	p.Lys684Asn	p.K684N	ENST00000373644	NM_030625.2	684	aaA/aaC																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	167	704	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965543	15965543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	39	345	0	ENST00000268712.3:c.5263C>T	p.Arg1755Cys	p.R1755C	ENST00000268712	NM_006311.3	1755	Cgc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	53	478	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																														
BCL6	604	MSKCC	GRCh37	3	187440346	187440346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	41	710	0	ENST00000232014.4:c.2021G>A	p.Arg674Gln	p.R674Q	ENST00000232014	NM_001130845.1	674	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471047	8471047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201751722		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	86	564	1	ENST00000356435.5:c.3452G>A	p.Arg1151His	p.R1151H	ENST00000356435		1151	cGc/cAc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164703	36164703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	79	897	0	ENST00000300305.3:c.1172C>T	p.Ala391Val	p.A391V	ENST00000300305		391	gCg/gTg																																																																														
NF2	4771	MSKCC	GRCh37	22	30032822	30032822	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	25	400	0	ENST00000338641.4:c.197A>G	p.Tyr66Cys	p.Y66C	ENST00000338641	NM_000268.3	66	tAc/tGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089730	27089730	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	43	642	0	ENST00000324856.7:c.2686G>T	p.Glu896Ter	p.E896*	ENST00000324856	NM_006015.4	896	Gaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117629975	117629975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	66	454	0	ENST00000368508.3:c.6551G>T	p.Arg2184Ile	p.R2184I	ENST00000368508	NM_002944.2	2184	aGa/aTa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	61	356	0	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332565	70332565	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185830524		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	40	677	0	ENST00000373644.4:c.470C>T	p.Ser157Leu	p.S157L	ENST00000373644	NM_030625.2	157	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	130	693	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	161	629	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168741	56168741	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775802110		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	90	496	0	ENST00000399503.3:c.1595G>A	p.Arg532Gln	p.R532Q	ENST00000399503	NM_005921.1	532	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	95	457	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954587	17954587	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	54	821	0	ENST00000458235.1:c.307C>T	p.Arg103Cys	p.R103C	ENST00000458235	NM_000215.3	103	Cgc/Tgc																																																																														
ALK	238	MSKCC	GRCh37	2	29450509	29450509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774004991		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	65	1010	0	ENST00000389048.3:c.2845G>A	p.Glu949Lys	p.E949K	ENST00000389048	NM_004304.4	949	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	56	421	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																														
RB1	5925	MSKCC	GRCh37	13	48953748	48953748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	21	314	0	ENST00000267163.4:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000267163	NM_000321.2	451	Cgc/Tgc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23649442	23649442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	59	415	0	ENST00000261584.4:c.57G>T	p.Glu19Asp	p.E19D	ENST00000261584	NM_024675.3	19	gaG/gaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832557	72832557	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141100730		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	58	563	0	ENST00000268489.5:c.4024G>A	p.Gly1342Arg	p.G1342R	ENST00000268489	NM_006885.3	1342	Gga/Aga																																																																														
IRF4	3662	MSKCC	GRCh37	6	394849	394849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	69	429	0	ENST00000380956.4:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000380956	NM_001195286.1	82	cGa/cAa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729613	41729613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	130	591	0	ENST00000242208.4:c.916C>T	p.Arg306Cys	p.R306C	ENST00000242208	NM_002192.2	306	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	57	369	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	122	641	1	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	26	389	1	ENST00000342988.3:c.1612G>A	p.Glu538Lys	p.E538K	ENST00000342988	NM_005359.5	538	Gaa/Aaa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29090089	29090089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	16	210	0	ENST00000328354.6:c.1392G>T	p.Lys464Asn	p.K464N	ENST00000328354	NM_007194.3	464	aaG/aaT																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94170371	94170371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	28	523	1	ENST00000323929.3:c.1898G>A	p.Arg633Gln	p.R633Q	ENST00000323929	NM_005591.3	633	cGa/cAa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915952	127915952	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	33	731	1	ENST00000373547.4:c.529C>T	p.Arg177Ter	p.R177*	ENST00000373547	NM_002721.4	177	Cga/Tga																																																																														
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	36	540	1	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112178211	112178211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	105	448	0	ENST00000257430.4:c.6920C>T	p.Ser2307Leu	p.S2307L	ENST00000257430	NM_000038.5	2307	tCg/tTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120360	94120360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	24	371	1	ENST00000369303.4:c.691C>T	p.Arg231Ter	p.R231*	ENST00000369303	NM_004440.3	231	Cga/Tga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287387	33287387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	123	684	0	ENST00000374542.5:c.1710G>T	p.Glu570Asp	p.E570D	ENST00000374542	NM_001141970.1	570	gaG/gaT																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662433	227662433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	139	671	0	ENST00000305123.5:c.1022C>T	p.Ser341Leu	p.S341L	ENST00000305123	NM_005544.2	341	tCg/tTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711911	89711911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	98	761	0	ENST00000371953.3:c.529T>G	p.Tyr177Asp	p.Y177D	ENST00000371953	NM_000314.4	177	Tat/Gat																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228613019	228613019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	29	429	0	ENST00000366696.1:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000366696	NM_003493.2	3	cGa/cAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	65	366	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687329	117687329	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	26	506	0	ENST00000368508.3:c.2722G>T	p.Glu908Ter	p.E908*	ENST00000368508	NM_002944.2	908	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108153445	108153445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	78	575	0	ENST00000278616.4:c.3585G>T	p.Glu1195Asp	p.E1195D	ENST00000278616	NM_000051.3	1195	gaG/gaT																																																																														
ATR	545	MSKCC	GRCh37	3	142266679	142266679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146504354		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	33	593	3	ENST00000350721.4:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000350721	NM_001184.3	1082	cGt/cAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201816	66201816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	83	555	1	ENST00000273854.3:c.2686C>T	p.Arg896Cys	p.R896C	ENST00000273854	NM_004439.5	896	Cgt/Tgt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185161405	185161405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	105	591	0	ENST00000265026.3:c.832C>T	p.Arg278Cys	p.R278C	ENST00000265026	NM_004721.4	278	Cgt/Tgt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9787030	9787030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	40	562	2	ENST00000377346.4:c.3061G>A	p.Glu1021Lys	p.E1021K	ENST00000377346	NM_005026.3	1021	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70352373	70352373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	38	530	0	ENST00000374080.3:c.4400G>A	p.Arg1467Gln	p.R1467Q	ENST00000374080		1467	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8733794	8733794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	82	571	0	ENST00000356435.5:c.50G>A	p.Arg17His	p.R17H	ENST00000356435		17	cGc/cAc																																																																														
ATM	472	MSKCC	GRCh37	11	108190748	108190748	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	57	488	0	ENST00000278616.4:c.6415G>T	p.Glu2139Ter	p.E2139*	ENST00000278616	NM_000051.3	2139	Gaa/Taa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742515	17742515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	130	634	1	ENST00000250003.3:c.697G>A	p.Glu233Lys	p.E233K	ENST00000250003	NM_002478.4	233	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68844172	68844172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	48	758	1	ENST00000261769.5:c.760G>A	p.Asp254Asn	p.D254N	ENST00000261769	NM_004360.3	254	Gat/Aat																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15967454	15967454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	73	589	0	ENST00000268712.3:c.5149G>A	p.Glu1717Lys	p.E1717K	ENST00000268712	NM_006311.3	1717	Gaa/Aaa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908873	101908873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200595614		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	234	810	0	ENST00000374994.4:c.1237C>T	p.Arg413Ter	p.R413*	ENST00000374994	NM_004612.2	413	Cga/Tga																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4101082	4101082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	30	442	1	ENST00000262948.5:c.640G>A	p.Gly214Arg	p.G214R	ENST00000262948	NM_030662.3	214	Ggg/Agg																																																																														
TET2	54790	MSKCC	GRCh37	4	106164913	106164913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs898441677		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	21	386	0	ENST00000380013.4:c.3781C>T	p.Arg1261Cys	p.R1261C	ENST00000380013	NM_001127208.2	1261	Cgc/Tgc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349918	15349918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	45	792	0	ENST00000263377.2:c.3734C>T	p.Ala1245Val	p.A1245V	ENST00000263377	NM_058243.2	1245	gCc/gTc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11319348	11319348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	52	793	3	ENST00000361445.4:c.119C>T	p.Ala40Val	p.A40V	ENST00000361445	NM_004958.3	40	gCc/gTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542357	187542357	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	54	487	0	ENST00000441802.2:c.5383C>T	p.Arg1795Ter	p.R1795*	ENST00000441802	NM_005245.3	1795	Cga/Tga																																																																														
MPL	4352	MSKCC	GRCh37	1	43812205	43812205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	118	694	1	ENST00000372470.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000372470	NM_005373.2	357	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	34	283	1	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073928	8073928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	181	578	0	ENST00000377482.5:c.731G>A	p.Arg244Gln	p.R244Q	ENST00000377482	NM_018948.3	244	cGa/cAa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158630638	158630638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	54	277	0	ENST00000263640.3:c.605G>T	p.Arg202Ile	p.R202I	ENST00000263640	NM_001105.4	202	aGa/aTa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291528	10291528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	37	706	1	ENST00000340748.4:c.151G>A	p.Glu51Lys	p.E51K	ENST00000340748		51	Gaa/Aaa																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346284	152346284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	39	733	0	ENST00000359321.1:c.286C>A	p.Leu96Ile	p.L96I	ENST00000359321	NM_005431.1	96	Ctt/Att																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793432	18793432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187869576		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	87	604	1	ENST00000266497.5:c.4129C>T	p.Arg1377Cys	p.R1377C	ENST00000266497		1377	Cgt/Tgt																																																																														
IRF4	3662	MSKCC	GRCh37	6	398896	398896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	43	635	0	ENST00000380956.4:c.706G>A	p.Glu236Lys	p.E236K	ENST00000380956	NM_001195286.1	236	Gag/Aag																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281219	46281219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	44	621	1	ENST00000371998.3:c.4016G>T	p.Arg1339Ile	p.R1339I	ENST00000371998		1339	aGa/aTa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86633825	86633825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	40	401	0	ENST00000274376.6:c.934G>T	p.Glu312Ter	p.E312*	ENST00000274376	NM_002890.2	312	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937950	76937950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	41	796	2	ENST00000373344.5:c.2798C>A	p.Ser933Tyr	p.S933Y	ENST00000373344	NM_000489.3	933	tCt/tAt																																																																														
ALK	238	MSKCC	GRCh37	2	30143035	30143035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	54	942	0	ENST00000389048.3:c.491G>A	p.Gly164Glu	p.G164E	ENST00000389048	NM_004304.4	164	gGg/gAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976703	2976703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	58	609	0	ENST00000396946.4:c.1309C>T	p.Arg437Cys	p.R437C	ENST00000396946	NM_032415.4	437	Cgc/Tgc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39584489	39584489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	81	409	0	ENST00000262039.4:c.1154G>A	p.Arg385Gln	p.R385Q	ENST00000262039	NM_002647.2	385	cGa/cAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5065040	5065040	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	17	372	0	ENST00000381652.3:c.1214C>T	p.Ser405Leu	p.S405L	ENST00000381652	NM_004972.3	405	tCg/tTg																																																																														
NPM1	4869	MSKCC	GRCh37	5	170815004	170815004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	28	425	0	ENST00000296930.5:c.52C>A	p.Leu18Ile	p.L18I	ENST00000296930	NM_002520.6	18	Ctt/Att																																																																														
JAK2	3717	MSKCC	GRCh37	9	5077508	5077508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	42	460	0	ENST00000381652.3:c.1920G>T	p.Lys640Asn	p.K640N	ENST00000381652	NM_004972.3	640	aaG/aaT																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740436	58740436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	137	742	0	ENST00000305921.3:c.1341G>T	p.Glu447Asp	p.E447D	ENST00000305921	NM_003620.3	447	gaG/gaT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100016	11100016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	162	742	2	ENST00000344626.4:c.1142G>A	p.Arg381Gln	p.R381Q	ENST00000344626	NM_003072.3	381	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108121756	108121756	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	104	695	0	ENST00000278616.4:c.1564G>T	p.Glu522Ter	p.E522*	ENST00000278616	NM_000051.3	522	Gaa/Taa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136182	11136182	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	123	642	1	ENST00000344626.4:c.3166G>A	p.Glu1056Lys	p.E1056K	ENST00000344626	NM_003072.3	1056	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76854897	76854897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	95	781	0	ENST00000373344.5:c.5939C>T	p.Ser1980Phe	p.S1980F	ENST00000373344	NM_000489.3	1980	tCt/tTt																																																																														
APC	324	MSKCC	GRCh37	5	112178781	112178781	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141010008		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	38	581	0	ENST00000257430.4:c.7490C>T	p.Ser2497Leu	p.S2497L	ENST00000257430	NM_000038.5	2497	tCg/tTg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6029587	6029587	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	109	605	0	ENST00000265849.7:c.989-1G>A		p.X330_splice	ENST00000265849	NM_000535.5	330																																																																															
PREX2	80243	MSKCC	GRCh37	8	68934284	68934284	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146218789		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	26	517	0	ENST00000288368.4:c.350G>A	p.Arg117His	p.R117H	ENST00000288368	NM_024870.2	117	cGt/cAt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004277	29004277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	28	441	2	ENST00000282397.4:c.1016G>A	p.Arg339Gln	p.R339Q	ENST00000282397	NM_002019.4	339	cGa/cAa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953887	17953887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	57	960	1	ENST00000458235.1:c.515G>A	p.Arg172Gln	p.R172Q	ENST00000458235	NM_000215.3	172	cGg/cAg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50826539	50826539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	21	468	0	ENST00000398568.2:c.2264G>A	p.Arg755Gln	p.R755Q	ENST00000398568	NM_001042412.1	755	cGa/cAa																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804348	46804348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	39	622	1	ENST00000290295.7:c.659G>A	p.Arg220His	p.R220H	ENST00000290295	NM_006361.5	220	cGc/cAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342507	118342507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	12	223	0	ENST00000534358.1:c.633G>T	p.Lys211Asn	p.K211N	ENST00000534358	NM_005933.3	211	aaG/aaT																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679798	88679798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	37	650	0	ENST00000360948.2:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000360948	NM_001012338.2	222	cGa/cAa																																																																														
NBN	4683	MSKCC	GRCh37	8	90955524	90955524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	135	659	1	ENST00000265433.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000265433	NM_002485.4	714	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10031979	10031979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	130	841	0	ENST00000330684.3:c.844G>A	p.Asp282Asn	p.D282N	ENST00000330684	NM_001134407.1	282	Gat/Aat																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873661	35873661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	30	376	0	ENST00000303115.3:c.617G>A	p.Arg206Gln	p.R206Q	ENST00000303115	NM_002185.3	206	cGa/cAa																																																																														
INSR	3643	MSKCC	GRCh37	19	7125533	7125533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	34	542	1	ENST00000302850.5:c.3019C>T	p.Pro1007Ser	p.P1007S	ENST00000302850	NM_000208.2	1007	Cca/Tca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610715	52610715	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	26	441	0	ENST00000394830.3:c.3459-1G>T		p.X1153_splice	ENST00000394830	NM_018313.4	1153																																																																															
CTCF	10664	MSKCC	GRCh37	16	67650720	67650720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	164	780	0	ENST00000264010.4:c.1025G>A	p.Arg342His	p.R342H	ENST00000264010	NM_006565.3	342	cGt/cAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76919048	76919048	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	45	365	0	ENST00000373344.5:c.3944-1G>T		p.X1315_splice	ENST00000373344	NM_000489.3	1315																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43769902	43769902	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	149	718	1	ENST00000382044.4:c.844G>T	p.Glu282Ter	p.E282*	ENST00000382044	NM_001141980.1	282	Gaa/Taa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073692	8073692	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	120	442	1	ENST00000377482.5:c.967G>T	p.Glu323Ter	p.E323*	ENST00000377482	NM_018948.3	323	Gaa/Taa																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434118	12434118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	31	401	0	ENST00000287820.6:c.486C>A	p.Phe162Leu	p.F162L	ENST00000287820	NM_015869.4	162	ttC/ttA																																																																														
APC	324	MSKCC	GRCh37	5	112177368	112177368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	60	395	0	ENST00000257430.4:c.6077C>T	p.Ser2026Phe	p.S2026F	ENST00000257430	NM_000038.5	2026	tCt/tTt																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724138	112724138	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	19	320	0	ENST00000369452.4:c.22G>T	p.Glu8Ter	p.E8*	ENST00000369452	NM_007373.3	8	Gaa/Taa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135796753	135796753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	26	390	0	ENST00000298552.3:c.734G>A	p.Arg245Gln	p.R245Q	ENST00000298552	NM_001162426.1	245	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884466	151884466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	30	498	1	ENST00000262189.6:c.4889C>T	p.Ser1630Leu	p.S1630L	ENST00000262189	NM_170606.2	1630	tCg/tTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714237	43714237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	183	1061	1	ENST00000382044.4:c.3916G>A	p.Asp1306Asn	p.D1306N	ENST00000382044	NM_001141980.1	1306	Gat/Aat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259681	11259681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	46	651	1	ENST00000361445.4:c.4024G>A	p.Glu1342Lys	p.E1342K	ENST00000361445	NM_004958.3	1342	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76776309	76776309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	86	988	1	ENST00000373344.5:c.7157G>A	p.Arg2386Gln	p.R2386Q	ENST00000373344	NM_000489.3	2386	cGa/cAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435188	56435188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	142	829	0	ENST00000407977.2:c.1949G>A	p.Arg650Gln	p.R650Q	ENST00000407977		650	cGa/cAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16056687	16056687	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	23	446	0	ENST00000268712.3:c.755A>C	p.Lys252Thr	p.K252T	ENST00000268712	NM_006311.3	252	aAa/aCa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803500	32803500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	59	907	0	ENST00000374899.4:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000374899	NM_018833.2	220	cGa/cAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27202926	27202926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	91	644	0	ENST00000380036.4:c.2018G>A	p.Arg673His	p.R673H	ENST00000380036	NM_000459.3	673	cGt/cAt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984079	2984079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	37	643	0	ENST00000396946.4:c.451G>A	p.Glu151Lys	p.E151K	ENST00000396946	NM_032415.4	151	Gag/Aag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805352	89805352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	39	706	0	ENST00000389301.3:c.4198C>T	p.Arg1400Cys	p.R1400C	ENST00000389301	NM_000135.2	1400	Cgt/Tgt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162750028	162750028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	83	425	1	ENST00000367921.3:c.2560G>A	p.Asp854Asn	p.D854N	ENST00000367921	NM_006182.2	854	Gac/Aac																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069620	69069620	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	76	613	0	ENST00000288368.4:c.4295A>G	p.Gln1432Arg	p.Q1432R	ENST00000288368	NM_024870.2	1432	cAg/cGg																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665109	182665109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	90	535	0	ENST00000292782.4:c.617G>A	p.Arg206Gln	p.R206Q	ENST00000292782	NM_020640.2	206	cGa/cAa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851828	63851828	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201944744		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	75	677	0	ENST00000279873.7:c.2606C>A	p.Ser869Tyr	p.S869Y	ENST00000279873	NM_032199.2	869	tCt/tAt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060728	38060728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	212	1126	2	ENST00000250448.2:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000250448	NM_004496.3	421	Gaa/Aaa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141012	55141012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	69	428	0	ENST00000257290.5:c.1658C>T	p.Pro553Leu	p.P553L	ENST00000257290	NM_006206.4	553	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112177377	112177377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	22	371	0	ENST00000257430.4:c.6086C>A	p.Ser2029Tyr	p.S2029Y	ENST00000257430	NM_000038.5	2029	tCt/tAt																																																																														
ATM	472	MSKCC	GRCh37	11	108173730	108173730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	19	418	0	ENST00000278616.4:c.5470C>A	p.Leu1824Ile	p.L1824I	ENST00000278616	NM_000051.3	1824	Ctt/Att																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729635	162729635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	39	656	0	ENST00000367921.3:c.721G>A	p.Asp241Asn	p.D241N	ENST00000367921	NM_006182.2	241	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108143494	108143494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	60	719	0	ENST00000278616.4:c.3199G>T	p.Asp1067Tyr	p.D1067Y	ENST00000278616	NM_000051.3	1067	Gac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112177354	112177354	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	27	423	0	ENST00000257430.4:c.6063C>A	p.Phe2021Leu	p.F2021L	ENST00000257430	NM_000038.5	2021	ttC/ttA																																																																														
CBL	867	MSKCC	GRCh37	11	119103322	119103322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	96	576	0	ENST00000264033.4:c.360G>T	p.Glu120Asp	p.E120D	ENST00000264033	NM_005188.3	120	gaG/gaT																																																																														
BARD1	580	MSKCC	GRCh37	2	215646149	215646149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	32	703	0	ENST00000260947.4:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000260947	NM_000465.2	150	cGa/cAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509660	106509660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	98	602	4	ENST00000359195.3:c.1654C>T	p.Arg552Cys	p.R552C	ENST00000359195	NM_002649.2	552	Cgc/Tgc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467884	66467884	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	57	487	0	ENST00000273854.3:c.385G>T	p.Glu129Ter	p.E129*	ENST00000273854	NM_004439.5	129	Gaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710875	117710875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140178288		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	100	608	1	ENST00000368508.3:c.1397G>A	p.Arg466Gln	p.R466Q	ENST00000368508	NM_002944.2	466	cGa/cAa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001373	150001373	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200119992		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	38	895	2	ENST00000253339.5:c.2231G>A	p.Arg744Gln	p.R744Q	ENST00000253339		744	cGa/cAa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590927	95590927	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	23	448	1	ENST00000343455.3:c.982G>T	p.Glu328Ter	p.E328*	ENST00000343455	NM_177438.2	328	Gaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710987	117710987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	19	305	0	ENST00000368508.3:c.1285G>T	p.Asp429Tyr	p.D429Y	ENST00000368508	NM_002944.2	429	Gat/Tat																																																																														
AKT1	207	MSKCC	GRCh37	14	105243030	105243030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	66	880	2	ENST00000349310.3:c.253G>A	p.Glu85Lys	p.E85K	ENST00000349310	NM_001014432.1	85	Gaa/Aaa																																																																														
NPM1	4869	MSKCC	GRCh37	5	170832364	170832364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	18	311	1	ENST00000296930.5:c.728C>A	p.Ser243Tyr	p.S243Y	ENST00000296930	NM_002520.6	243	tCt/tAt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972866	25972866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	105	703	1	ENST00000435504.4:c.1559C>T	p.Ser520Phe	p.S520F	ENST00000435504		520	tCt/tTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68939483	68939483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	70	492	0	ENST00000288368.4:c.468G>T	p.Lys156Asn	p.K156N	ENST00000288368	NM_024870.2	156	aaG/aaT																																																																														
TET2	54790	MSKCC	GRCh37	4	106158129	106158129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	22	372	0	ENST00000380013.4:c.3030G>T	p.Glu1010Asp	p.E1010D	ENST00000380013	NM_001127208.2	1010	gaG/gaT																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752361	57752361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	27	546	0	ENST00000274289.3:c.1212G>T	p.Lys404Asn	p.K404N	ENST00000274289	NM_006622.3	404	aaG/aaT																																																																														
CASP8	841	MSKCC	GRCh37	2	202131315	202131315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	33	571	0	ENST00000358485.4:c.283G>T	p.Glu95Ter	p.E95*	ENST00000358485	NM_001080125.1	95	Gaa/Taa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690570	88690570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	35	483	1	ENST00000360948.2:c.460G>A	p.Glu154Lys	p.E154K	ENST00000360948	NM_001012338.2	154	Gaa/Aaa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80537246	80537246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	38	742	0	ENST00000286548.4:c.152G>A	p.Gly51Asp	p.G51D	ENST00000286548	NM_002072.3	51	gGc/gAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76939158	76939158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	42	777	0	ENST00000373344.5:c.1590G>T	p.Glu530Asp	p.E530D	ENST00000373344	NM_000489.3	530	gaG/gaT																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073350	8073350	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	100	738	0	ENST00000377482.5:c.1309G>T	p.Glu437Ter	p.E437*	ENST00000377482	NM_018948.3	437	Gaa/Taa																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073509	8073509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	147	541	0	ENST00000377482.5:c.1150G>T	p.Glu384Ter	p.E384*	ENST00000377482	NM_018948.3	384	Gaa/Taa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11193205	11193205	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	58	841	0	ENST00000361445.4:c.5296G>T	p.Glu1766Ter	p.E1766*	ENST00000361445	NM_004958.3	1766	Gag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257985	16257985	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	40	535	0	ENST00000375759.3:c.5250T>G	p.Asp1750Glu	p.D1750E	ENST00000375759	NM_015001.2	1750	gaT/gaG																																																																														
CDC42	998	MSKCC	GRCh37	1	22413036	22413036	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	64	310	0	ENST00000344548.3:c.283G>T	p.Glu95Ter	p.E95*	ENST00000344548	NM_001039802.1	95	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023682	27023682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	102	647	0	ENST00000324856.7:c.788C>A	p.Ser263Tyr	p.S263Y	ENST00000324856	NM_006015.4	263	tCt/tAt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36931961	36931961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	132	549	1	ENST00000361632.4:c.2508C>A	p.Phe836Leu	p.F836L	ENST00000361632		836	ttC/ttA																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937934	36937934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	174	1015	0	ENST00000361632.4:c.902C>T	p.Thr301Met	p.T301M	ENST00000361632		301	aCg/aTg																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51436146	51436146	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	53	368	0	ENST00000262662.1:c.106G>T	p.Gly36Ter	p.G36*	ENST00000262662		36	Gga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65313289	65313289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	35	736	0	ENST00000342505.4:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000342505	NM_002227.2	609	Gaa/Aaa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330476	65330476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	73	561	0	ENST00000342505.4:c.1170G>T	p.Lys390Asn	p.K390N	ENST00000342505	NM_002227.2	390	aaG/aaT																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78426167	78426167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	57	305	0	ENST00000370768.2:c.1358C>A	p.Pro453His	p.P453H	ENST00000370768	NM_003902.3	453	cCt/cAt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115272882	115272882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	91	760	0	ENST00000438362.2:c.1491G>T	p.Glu497Asp	p.E497D	ENST00000438362	NM_001242891.1	497	gaG/gaT																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115284149	115284149	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	88	563	0	ENST00000438362.2:c.137C>A	p.Ser46Tyr	p.S46Y	ENST00000438362	NM_001242891.1	46	tCt/tAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729663	162729663	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	41	672	0	ENST00000367921.3:c.749T>C	p.Val250Ala	p.V250A	ENST00000367921	NM_006182.2	250	gTg/gCg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162737039	162737039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	37	672	0	ENST00000367921.3:c.1183G>T	p.Asp395Tyr	p.D395Y	ENST00000367921	NM_006182.2	395	Gac/Tac																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984340	201984340	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	40	578	0	ENST00000359651.3:c.1005C>A	p.Tyr335Ter	p.Y335*	ENST00000359651		335	taC/taA																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63661997	63661997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	106	572	0	ENST00000279873.7:c.101G>A	p.Arg34Lys	p.R34K	ENST00000279873	NM_032199.2	34	aGa/aAa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332679	70332679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	102	706	0	ENST00000373644.4:c.584G>T	p.Arg195Ile	p.R195I	ENST00000373644	NM_030625.2	195	aGa/aTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70333925	70333925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	77	346	1	ENST00000373644.4:c.1830G>T	p.Lys610Asn	p.K610N	ENST00000373644	NM_030625.2	610	aaG/aaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685303	89685303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	33	422	0	ENST00000371953.3:c.198G>T	p.Lys66Asn	p.K66N	ENST00000371953	NM_000314.4	66	aaG/aaT																																																																														
SESN3	143686	MSKCC	GRCh37	11	94908801	94908801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	32	599	0	ENST00000536441.1:c.1253A>G	p.Asp418Gly	p.D418G	ENST00000536441	NM_144665.3	418	gAt/gGt																																																																														
PGR	5241	MSKCC	GRCh37	11	100999575	100999575	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	65	1226	0	ENST00000325455.5:c.227A>G	p.Asp76Gly	p.D76G	ENST00000325455	NM_001202474.3	76	gAc/gGc																																																																														
ATM	472	MSKCC	GRCh37	11	108122680	108122680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	23	560	0	ENST00000278616.4:c.1724C>T	p.Ser575Leu	p.S575L	ENST00000278616	NM_000051.3	575	tCa/tTa																																																																														
ATM	472	MSKCC	GRCh37	11	108142118	108142118	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	66	622	0	ENST00000278616.4:c.3062T>C	p.Val1021Ala	p.V1021A	ENST00000278616	NM_000051.3	1021	gTa/gCa																																																																														
ATM	472	MSKCC	GRCh37	11	108235887	108235887	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	32	616	0	ENST00000278616.4:c.8929G>T	p.Glu2977Ter	p.E2977*	ENST00000278616	NM_000051.3	2977	Gaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375326	118375326	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	120	491	0	ENST00000534358.1:c.8719A>G	p.Thr2907Ala	p.T2907A	ENST00000534358	NM_005933.3	2907	Aca/Gca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118380671	118380671	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	47	365	0	ENST00000534358.1:c.10909A>G	p.Thr3637Ala	p.T3637A	ENST00000534358	NM_005933.3	3637	Aca/Gca																																																																														
CCND2	894	MSKCC	GRCh37	12	4385325	4385325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	83	430	2	ENST00000261254.3:c.350C>T	p.Pro117Leu	p.P117L	ENST00000261254	NM_001759.3	117	cCg/cTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544146	18544146	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	19	454	0	ENST00000266497.5:c.1963A>C	p.Lys655Gln	p.K655Q	ENST00000266497		655	Aaa/Caa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719938	18719938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	48	648	0	ENST00000266497.5:c.3835G>T	p.Asp1279Tyr	p.D1279Y	ENST00000266497		1279	Gat/Tat																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944931	31944931	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	30	383	0	ENST00000340398.3:c.170C>A	p.Ser57Ter	p.S57*	ENST00000340398	NM_001013699.2	57	tCg/tAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123662	46123662	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	45	323	0	ENST00000334344.6:c.43A>C	p.Lys15Gln	p.K15Q	ENST00000334344	NM_152641.2	15	Aag/Cag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231350	46231350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	31	643	0	ENST00000334344.6:c.1190A>C	p.Gln397Pro	p.Q397P	ENST00000334344	NM_152641.2	397	cAg/cCg																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50479996	50479996	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	57	784	0	ENST00000394963.4:c.230G>T	p.Gly77Val	p.G77V	ENST00000394963	NM_003076.4	77	gGa/gTa																																																																														
CDK4	1019	MSKCC	GRCh37	12	58144740	58144740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	101	615	0	ENST00000257904.6:c.488G>T	p.Arg163Ile	p.R163I	ENST00000257904	NM_000075.3	163	aGa/aTa																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145001	58145001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	125	623	0	ENST00000257904.6:c.343G>A	p.Glu115Lys	p.E115K	ENST00000257904	NM_000075.3	115	Gaa/Aaa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975698	26975698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	34	518	0	ENST00000381527.3:c.1206G>T	p.Lys402Asn	p.K402N	ENST00000381527	NM_001260.1	402	aaG/aaT																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041067	29041067	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	37	583	0	ENST00000282397.4:c.361G>T	p.Glu121Ter	p.E121*	ENST00000282397	NM_002019.4	121	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912291	32912291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	30	596	0	ENST00000380152.3:c.3799G>T	p.Asp1267Tyr	p.D1267Y	ENST00000380152		1267	Gat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915273	32915273	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	41	786	1	ENST00000380152.3:c.6781G>T	p.Glu2261Ter	p.E2261*	ENST00000380152		2261	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48878068	48878068	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	41	301	0	ENST00000267163.4:c.20del	p.Arg7GlnfsTer58	p.R7Qfs*58	ENST00000267163	NM_000321.2	7	cGa/ca																																																																														
RB1	5925	MSKCC	GRCh37	13	48941739	48941739	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	16	420	0	ENST00000267163.4:c.1049G>T	p.Ser350Ile	p.S350I	ENST00000267163	NM_000321.2	350	aGt/aTt																																																																														
RB1	5925	MSKCC	GRCh37	13	48955517	48955517	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	28	526	0	ENST00000267163.4:c.1633G>T	p.Glu545Ter	p.E545*	ENST00000267163	NM_000321.2	545	Gaa/Taa																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281864	49281864	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	43	832	0	ENST00000282018.3:c.911T>C	p.Leu304Pro	p.L304P	ENST00000282018	NM_020377.2	304	cTc/cCc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73333958	73333958	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	80	741	0	ENST00000377767.4:c.2852A>C	p.Lys951Thr	p.K951T	ENST00000377767	NM_014953.3	951	aAa/aCa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103506717	103506717	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	31	184	0	ENST00000355739.4:c.460A>C	p.Lys154Gln	p.K154Q	ENST00000355739	NM_000123.3	154	Aaa/Caa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103510633	103510633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	38	448	0	ENST00000355739.4:c.537C>A	p.Phe179Leu	p.F179L	ENST00000355739	NM_000123.3	179	ttC/ttA																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527822	103527822	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	68	402	0	ENST00000355739.4:c.3130G>T	p.Glu1044Ter	p.E1044*	ENST00000355739	NM_000123.3	1044	Gaa/Taa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438161	110438161	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	28	389	0	ENST00000375856.3:c.240A>C	p.Lys80Asn	p.K80N	ENST00000375856	NM_003749.2	80	aaA/aaC																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68934929	68934929	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	90	561	0	ENST00000487270.1:c.998T>G	p.Phe333Cys	p.F333C	ENST00000487270	NM_133509.3	333	tTt/tGt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609650	81609650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	76	783	1	ENST00000298171.2:c.1248C>A	p.Phe416Leu	p.F416L	ENST00000298171	NM_000369.2	416	ttC/ttA																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614570	38614570	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	29	791	0	ENST00000299084.4:c.336T>G	p.Phe112Leu	p.F112L	ENST00000299084	NM_152594.2	112	ttT/ttG																																																																														
MGA	23269	MSKCC	GRCh37	15	41988360	41988360	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	119	687	0	ENST00000219905.7:c.1152A>T	p.Glu384Asp	p.E384D	ENST00000219905	NM_001164273.1	384	gaA/gaT																																																																														
MGA	23269	MSKCC	GRCh37	15	41999967	41999967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	110	846	0	ENST00000219905.7:c.2230G>T	p.Asp744Tyr	p.D744Y	ENST00000219905	NM_001164273.1	744	Gat/Tat																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701145	43701145	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	33	602	0	ENST00000382044.4:c.5550T>G	p.Asn1850Lys	p.N1850K	ENST00000382044	NM_001141980.1	1850	aaT/aaG																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748591	43748591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	69	1161	0	ENST00000382044.4:c.2215C>A	p.Leu739Ile	p.L739I	ENST00000382044	NM_001141980.1	739	Ctt/Att																																																																														
BLM	641	MSKCC	GRCh37	15	91292688	91292688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	28	476	0	ENST00000355112.3:c.190G>T	p.Asp64Tyr	p.D64Y	ENST00000355112	NM_000057.2	64	Gat/Tat																																																																														
TSC2	7249	MSKCC	GRCh37	16	2104300	2104300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	99	577	0	ENST00000219476.3:c.340G>A	p.Glu114Lys	p.E114K	ENST00000219476	NM_000548.3	114	Gag/Aag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3652187	3652187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	55	1002	1	ENST00000294008.3:c.882C>A	p.Phe294Leu	p.F294L	ENST00000294008	NM_032444.2	294	ttC/ttA																																																																														
SLX4	84464	MSKCC	GRCh37	16	3658656	3658656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	66	1244	1	ENST00000294008.3:c.310C>A	p.Gln104Lys	p.Q104K	ENST00000294008	NM_032444.2	104	Caa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857199	9857199	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	91	542	0	ENST00000330684.3:c.4202T>G	p.Leu1401Arg	p.L1401R	ENST00000330684	NM_001134407.1	1401	cTt/cGt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641346	23641346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	142	921	3	ENST00000261584.4:c.2129C>T	p.Thr710Met	p.T710M	ENST00000261584	NM_024675.3	710	aCg/aTg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783853	50783853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	71	811	2	ENST00000398568.2:c.244C>A	p.Leu82Ile	p.L82I	ENST00000398568	NM_001042412.1	82	Ctc/Atc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829522	72829522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	47	855	0	ENST00000268489.5:c.7059G>T	p.Lys2353Asn	p.K2353N	ENST00000268489	NM_006885.3	2353	aaG/aaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830406	72830406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	63	404	0	ENST00000268489.5:c.6175G>A	p.Ala2059Thr	p.A2059T	ENST00000268489	NM_006885.3	2059	Gcg/Acg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991576	72991576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	64	1018	0	ENST00000268489.5:c.2469G>T	p.Met823Ile	p.M823I	ENST00000268489	NM_006885.3	823	atG/atT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992568	72992568	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	100	818	0	ENST00000268489.5:c.1477G>T	p.Gly493Ter	p.G493*	ENST00000268489	NM_006885.3	493	Gga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29509673	29509673	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	23	546	0	ENST00000358273.4:c.878A>C	p.Asn293Thr	p.N293T	ENST00000358273	NM_001042492.2	293	aAc/aCc																																																																														
NF1	4763	MSKCC	GRCh37	17	29553692	29553692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	35	785	0	ENST00000358273.4:c.2241G>T	p.Met747Ile	p.M747I	ENST00000358273	NM_001042492.2	747	atG/atT																																																																														
NF1	4763	MSKCC	GRCh37	17	29556440	29556440	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	38	709	0	ENST00000358273.4:c.2807A>C	p.Lys936Thr	p.K936T	ENST00000358273	NM_001042492.2	936	aAa/aCa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37672011	37672011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	103	730	1	ENST00000447079.4:c.2796G>T	p.Lys932Asn	p.K932N	ENST00000447079	NM_015083.1	932	aaG/aaT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244543	41244543	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	120	957	1	ENST00000357654.3:c.3005A>G	p.Asn1002Ser	p.N1002S	ENST00000357654	NM_007294.3	1002	aAc/aGc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245047	41245047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	59	1163	0	ENST00000357654.3:c.2501G>A	p.Gly834Glu	p.G834E	ENST00000357654	NM_007294.3	834	gGa/gAa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245278	41245278	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	51	1022	0	ENST00000357654.3:c.2270T>C	p.Val757Ala	p.V757A	ENST00000357654	NM_007294.3	757	gTt/gCt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246166	41246166	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	44	815	0	ENST00000357654.3:c.1382T>G	p.Phe461Cys	p.F461C	ENST00000357654	NM_007294.3	461	tTt/tGt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41247926	41247926	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	33	587	1	ENST00000357654.3:c.607G>T	p.Glu203Ter	p.E203*	ENST00000357654	NM_007294.3	203	Gaa/Taa																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804291	46804291	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	46	787	0	ENST00000290295.7:c.716A>C	p.Lys239Thr	p.K239T	ENST00000290295	NM_006361.5	239	aAg/aCg																																																																														
MSI2	124540	MSKCC	GRCh37	17	55334859	55334859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	139	584	0	ENST00000284073.2:c.136G>A	p.Glu46Lys	p.E46K	ENST00000284073	NM_138962.2	46	Gaa/Aaa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59861674	59861674	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	100	616	0	ENST00000259008.2:c.1585G>T	p.Gly529Ter	p.G529*	ENST00000259008	NM_032043.2	529	Gga/Tga																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59926518	59926518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	47	985	2	ENST00000259008.2:c.479G>T	p.Arg160Ile	p.R160I	ENST00000259008	NM_032043.2	160	aGa/aTa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117780	70117780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	46	780	0	ENST00000245479.2:c.248G>A	p.Gly83Asp	p.G83D	ENST00000245479	NM_000346.3	83	gGc/gAc																																																																														
YES1	7525	MSKCC	GRCh37	18	739800	739800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	73	509	0	ENST00000314574.4:c.1072G>T	p.Asp358Tyr	p.D358Y	ENST00000314574	NM_005433.3	358	Gat/Tat																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39593530	39593530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	35	355	0	ENST00000262039.4:c.1295A>C	p.Asn432Thr	p.N432T	ENST00000262039	NM_002647.2	432	aAt/aCt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395710	45395710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	81	495	0	ENST00000262160.6:c.424G>A	p.Glu142Lys	p.E142K	ENST00000262160	NM_005901.5	142	Gaa/Aaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7172323	7172323	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	39	513	0	ENST00000302850.5:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000302850	NM_000208.2	416	Cga/Tga																																																																														
CALR	811	MSKCC	GRCh37	19	13051462	13051462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	86	447	0	ENST00000316448.5:c.810G>T	p.Glu270Asp	p.E270D	ENST00000316448	NM_004343.3	270	gaG/gaT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15278158	15278158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	53	946	0	ENST00000263388.2:c.5264T>C	p.Leu1755Pro	p.L1755P	ENST00000263388	NM_000435.2	1755	cTg/cCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300127	15300127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	58	924	0	ENST00000263388.2:c.1149C>A	p.Phe383Leu	p.F383L	ENST00000263388	NM_000435.2	383	ttC/ttA																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355299	15355299	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	93	478	0	ENST00000263377.2:c.2324A>C	p.Gln775Pro	p.Q775P	ENST00000263377	NM_058243.2	775	cAg/cCg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17942524	17942524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	135	813	0	ENST00000458235.1:c.2764G>A	p.Asp922Asn	p.D922N	ENST00000458235	NM_000215.3	922	Gat/Aat																																																																														
JAK3	3718	MSKCC	GRCh37	19	17951074	17951074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	41	706	1	ENST00000458235.1:c.1219G>A	p.Asp407Asn	p.D407N	ENST00000458235	NM_000215.3	407	Gac/Aac																																																																														
CCNE1	898	MSKCC	GRCh37	19	30303897	30303897	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	39	657	0	ENST00000262643.3:c.133G>T	p.Glu45Ter	p.E45*	ENST00000262643	NM_001238.2	45	Gaa/Taa																																																																														
AXL	558	MSKCC	GRCh37	19	41744410	41744410	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148886744		P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	123	860	0	ENST00000301178.4:c.1030C>T	p.Arg344Trp	p.R344W	ENST00000301178	NM_021913.4	344	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	29446389	29446389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	57	1019	0	ENST00000389048.3:c.3178C>T	p.Arg1060Cys	p.R1060C	ENST00000389048	NM_004304.4	1060	Cgc/Tgc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018209	48018209	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	118	723	0	ENST00000234420.5:c.404A>G	p.Asp135Gly	p.D135G	ENST00000234420	NM_000179.2	135	gAt/gGt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026567	48026567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	100	516	0	ENST00000234420.5:c.1445G>A	p.Arg482Gln	p.R482Q	ENST00000234420	NM_000179.2	482	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027593	48027593	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	89	405	0	ENST00000234420.5:c.2471A>C	p.Lys824Thr	p.K824T	ENST00000234420	NM_000179.2	824	aAa/aCa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028004	48028004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	24	370	0	ENST00000234420.5:c.2882G>A	p.Arg961Lys	p.R961K	ENST00000234420	NM_000179.2	961	aGa/aAa																																																																														
REL	5966	MSKCC	GRCh37	2	61147190	61147190	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	64	411	0	ENST00000295025.8:c.868A>G	p.Lys290Glu	p.K290E	ENST00000295025	NM_002908.2	290	Aaa/Gaa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096082	178096082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	71	632	0	ENST00000397062.3:c.1249G>A	p.Val417Met	p.V417M	ENST00000397062	NM_006164.4	417	Gtg/Atg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131183	202131183	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	48	399	0	ENST00000358485.4:c.152-1G>T		p.X51_splice	ENST00000358485	NM_001080125.1	51																																																																															
CASP8	841	MSKCC	GRCh37	2	202131364	202131364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	93	526	0	ENST00000358485.4:c.332G>T	p.Arg111Ile	p.R111I	ENST00000358485	NM_001080125.1	111	aGa/aTa																																																																														
CASP8	841	MSKCC	GRCh37	2	202131375	202131375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	116	538	0	ENST00000358485.4:c.343G>A	p.Glu115Lys	p.E115K	ENST00000358485	NM_001080125.1	115	Gaa/Aaa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209101875	209101875	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	68	570	1	ENST00000345146.2:c.1173C>A	p.Tyr391Ter	p.Y391*	ENST00000345146	NM_005896.2	391	taC/taA																																																																														
IDH1	3417	MSKCC	GRCh37	2	209108298	209108298	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	32	575	0	ENST00000345146.2:c.551A>C	p.Asn184Thr	p.N184T	ENST00000345146	NM_005896.2	184	aAt/aCt																																																																														
BARD1	580	MSKCC	GRCh37	2	215645784	215645784	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	104	719	0	ENST00000260947.4:c.814T>G	p.Phe272Val	p.F272V	ENST00000260947	NM_000465.2	272	Ttt/Gtt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662805	227662805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	59	802	1	ENST00000305123.5:c.650C>T	p.Ser217Leu	p.S217L	ENST00000305123	NM_005544.2	217	tCg/tTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385260	41385260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	36	670	0	ENST00000373198.4:c.701A>G	p.Asp234Gly	p.D234G	ENST00000373198	NM_133170.3	234	gAc/gGc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54958042	54958042	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	36	300	0	ENST00000312783.6:c.565C>T	p.Arg189Trp	p.R189W	ENST00000312783	NM_198436.1	189	Cgg/Tgg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24145583	24145583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	45	801	0	ENST00000263121.7:c.602G>A	p.Arg201Gln	p.R201Q	ENST00000263121	NM_003073.3	201	cGa/cAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	23	599	1	ENST00000263253.7:c.4195G>T	p.Asp1399Tyr	p.D1399Y	ENST00000263253	NM_001429.3	1399	Gat/Tat																																																																														
MLH1	4292	MSKCC	GRCh37	3	37092144	37092144	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	27	483	0	ENST00000231790.2:c.2271A>C	p.Ter757TyrextTer36	p.*757Yext*36	ENST00000231790	NM_000249.3	757	taA/taC																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267225	41267225	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	37	507	0	ENST00000349496.5:c.809A>C	p.Lys270Thr	p.K270T	ENST00000349496	NM_001904.3	270	aAa/aCa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47061326	47061326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	25	489	0	ENST00000409792.3:c.7355C>T	p.Ser2452Leu	p.S2452L	ENST00000409792	NM_014159.6	2452	tCg/tTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443599	52443599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	83	557	0	ENST00000460680.1:c.93G>T	p.Glu31Asp	p.E31D	ENST00000460680	NM_004656.3	31	gaG/gaT																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72897372	72897372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	60	388	1	ENST00000325599.8:c.120C>A	p.Phe40Leu	p.F40L	ENST00000325599	NM_018130.2	40	ttC/ttA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390088	89390088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	62	424	0	ENST00000336596.2:c.837G>T	p.Lys279Asn	p.K279N	ENST00000336596	NM_005233.5	279	aaG/aaT																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119624700	119624700	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	20	431	0	ENST00000316626.5:c.716-1G>T		p.X239_splice	ENST00000316626		239																																																																															
PIK3CB	5291	MSKCC	GRCh37	3	138453575	138453575	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	82	592	0	ENST00000289153.2:c.873A>C	p.Lys291Asn	p.K291N	ENST00000289153	NM_006219.2	291	aaA/aaC																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474805	138474805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	68	473	0	ENST00000289153.2:c.188T>C	p.Val63Ala	p.V63A	ENST00000289153	NM_006219.2	63	gTt/gCt																																																																														
ATR	545	MSKCC	GRCh37	3	142226779	142226779	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	74	437	0	ENST00000350721.4:c.5025T>G	p.Phe1675Leu	p.F1675L	ENST00000350721	NM_001184.3	1675	ttT/ttG																																																																														
ATR	545	MSKCC	GRCh37	3	142272100	142272100	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	36	650	0	ENST00000350721.4:c.2774T>G	p.Phe925Cys	p.F925C	ENST00000350721	NM_001184.3	925	tTt/tGt																																																																														
ATR	545	MSKCC	GRCh37	3	142281515	142281515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	45	754	0	ENST00000350721.4:c.729A>C	p.Lys243Asn	p.K243N	ENST00000350721	NM_001184.3	243	aaA/aaC																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170020884	170020884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	35	270	1	ENST00000295797.4:c.1760C>A	p.Pro587His	p.P587H	ENST00000295797	NM_002740.5	587	cCt/cAt																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182662938	182662938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	89	552	0	ENST00000292782.4:c.724G>T	p.Asp242Tyr	p.D242Y	ENST00000292782	NM_020640.2	242	Gac/Tac																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665375	182665375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	16	328	0	ENST00000292782.4:c.566G>T	p.Arg189Ile	p.R189I	ENST00000292782	NM_020640.2	189	aGa/aTa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1795732	1795732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	84	357	0	ENST00000260795.2:c.71C>A	p.Ser24Tyr	p.S24Y	ENST00000260795		24	tCc/tAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141007	55141007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	54	411	0	ENST00000257290.5:c.1654-1G>T		p.X552_splice	ENST00000257290	NM_006206.4	552																																																																															
KDR	3791	MSKCC	GRCh37	4	55970882	55970882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	40	684	1	ENST00000263923.4:c.1915G>T	p.Asp639Tyr	p.D639Y	ENST00000263923	NM_002253.2	639	Gac/Tac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66218777	66218777	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	68	374	0	ENST00000273854.3:c.2281T>G	p.Leu761Val	p.L761V	ENST00000273854	NM_004439.5	761	Tta/Gta																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356339	66356339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	107	587	0	ENST00000273854.3:c.1158G>T	p.Arg386Ser	p.R386S	ENST00000273854	NM_004439.5	386	agG/agT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467988	66467988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	54	473	1	ENST00000273854.3:c.281C>T	p.Ala94Val	p.A94V	ENST00000273854	NM_004439.5	94	gCc/gTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106197568	106197568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	31	473	0	ENST00000380013.4:c.5901C>A	p.Phe1967Leu	p.F1967L	ENST00000380013	NM_001127208.2	1967	ttC/ttA																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143130067	143130067	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	23	695	0	ENST00000262992.4:c.949G>T	p.Glu317Ter	p.E317*	ENST00000262992	NM_001101669.1	317	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245420	153245420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	97	783	0	ENST00000281708.4:c.1771G>T	p.Asp591Tyr	p.D591Y	ENST00000281708	NM_033632.3	591	Gac/Tac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245518	153245518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	89	512	0	ENST00000281708.4:c.1673C>A	p.Ser558Tyr	p.S558Y	ENST00000281708	NM_033632.3	558	tCt/tAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268093	153268093	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	56	340	0	ENST00000281708.4:c.715A>C	p.Lys239Gln	p.K239Q	ENST00000281708	NM_033632.3	239	Aaa/Caa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187527366	187527366	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	86	462	0	ENST00000441802.2:c.10208T>G	p.Ile3403Ser	p.I3403S	ENST00000441802	NM_005245.3	3403	aTt/aGt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532659	187532659	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	91	591	0	ENST00000441802.2:c.9734T>C	p.Val3245Ala	p.V3245A	ENST00000441802	NM_005245.3	3245	gTt/gCt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542914	187542914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	50	332	0	ENST00000441802.2:c.4826C>A	p.Ser1609Tyr	p.S1609Y	ENST00000441802	NM_005245.3	1609	tCt/tAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1293671	1293671	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	185	958	1	ENST00000310581.5:c.1330G>T	p.Asp444Tyr	p.D444Y	ENST00000310581	NM_198253.2	444	Gac/Tac																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31401601	31401601	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	143	787	0	ENST00000344624.3:c.4063A>C	p.Met1355Leu	p.M1355L	ENST00000344624		1355	Atg/Ctg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867477	35867477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	49	341	0	ENST00000303115.3:c.291G>T	p.Lys97Asn	p.K97N	ENST00000303115	NM_002185.3	97	aaG/aaT																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876302	35876302	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	38	647	1	ENST00000303115.3:c.1094C>A	p.Ser365Ter	p.S365*	ENST00000303115	NM_002185.3	365	tCa/tAa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38953100	38953100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	33	323	0	ENST00000357387.3:c.2884C>A	p.Leu962Ile	p.L962I	ENST00000357387	NM_152756.3	962	Ctt/Att																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38955713	38955713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	44	468	0	ENST00000357387.3:c.2593C>T	p.Arg865Cys	p.R865C	ENST00000357387	NM_152756.3	865	Cgt/Tgt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181803	56181803	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	63	457	0	ENST00000399503.3:c.4027G>T	p.Glu1343Ter	p.E1343*	ENST00000399503	NM_005921.1	1343	Gaa/Taa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80057444	80057444	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	20	487	0	ENST00000265081.6:c.1843C>G	p.Leu615Val	p.L615V	ENST00000265081	NM_002439.4	615	Cta/Gta																																																																														
MSH3	4437	MSKCC	GRCh37	5	80071522	80071522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	54	447	0	ENST00000265081.6:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000265081	NM_002439.4	755	Gaa/Aaa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627247	86627247	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	51	519	0	ENST00000274376.6:c.622G>T	p.Glu208Ter	p.E208*	ENST00000274376	NM_002890.2	208	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112174376	112174376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	14	331	0	ENST00000257430.4:c.3085C>A	p.Leu1029Ile	p.L1029I	ENST00000257430	NM_000038.5	1029	Ctt/Att																																																																														
APC	324	MSKCC	GRCh37	5	112179452	112179452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	37	554	0	ENST00000257430.4:c.8161C>T	p.Arg2721Cys	p.R2721C	ENST00000257430	NM_000038.5	2721	Cgc/Tgc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923308	131923308	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	10	230	0	ENST00000265335.6:c.811G>T	p.Glu271Ter	p.E271*	ENST00000265335		271	Gaa/Taa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149434859	149434859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	51	824	0	ENST00000286301.3:c.2595C>A	p.Phe865Leu	p.F865L	ENST00000286301	NM_005211.3	865	ttC/ttA																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562927	176562927	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	33	589	0	ENST00000439151.2:c.823A>C	p.Asn275His	p.N275H	ENST00000439151	NM_022455.4	275	Aat/Cat																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637673	176637673	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	39	725	0	ENST00000439151.2:c.2273C>A	p.Ser758Ter	p.S758*	ENST00000439151	NM_022455.4	758	tCa/tAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176694671	176694671	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	83	585	0	ENST00000439151.2:c.5255A>G	p.Lys1752Arg	p.K1752R	ENST00000439151	NM_022455.4	1752	aAa/aGa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709561	176709561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	32	458	0	ENST00000439151.2:c.5988C>A	p.Phe1996Leu	p.F1996L	ENST00000439151	NM_022455.4	1996	ttC/ttA																																																																														
E2F3	1871	MSKCC	GRCh37	6	20486969	20486969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	24	425	1	ENST00000346618.3:c.934G>T	p.Asp312Tyr	p.D312Y	ENST00000346618	NM_001949.4	312	Gac/Tac																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056484	26056484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	61	322	0	ENST00000343677.2:c.173C>A	p.Ser58Tyr	p.S58Y	ENST00000343677	NM_005319.3	58	tCt/tAt																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911143	29911143	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	125	382	0	ENST00000376809.5:c.442A>C	p.Ile148Leu	p.I148L	ENST00000376809	NM_002116.7	148	Atc/Ctc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324054	31324054	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	102	587	0	ENST00000412585.2:c.509A>C	p.Lys170Thr	p.K170T	ENST00000412585	NM_005514.6	170	aAg/aCg																																																																														
CCND3	896	MSKCC	GRCh37	6	41908170	41908170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	62	869	0	ENST00000372991.4:c.352C>T	p.Pro118Ser	p.P118S	ENST00000372991	NM_001760.3	118	Ccc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120683	94120683	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	103	626	0	ENST00000369303.4:c.368T>G	p.Phe123Cys	p.F123C	ENST00000369303	NM_004440.3	123	tTt/tGt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674241	117674241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	48	770	0	ENST00000368508.3:c.4233G>T	p.Lys1411Asn	p.K1411N	ENST00000368508	NM_002944.2	1411	aaG/aaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686368	117686368	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	34	219	0	ENST00000368508.3:c.2974-1G>A		p.X992_splice	ENST00000368508	NM_002944.2	992																																																																															
ROS1	6098	MSKCC	GRCh37	6	117708061	117708061	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	21	523	0	ENST00000368508.3:c.2116A>C	p.Asn706His	p.N706H	ENST00000368508	NM_002944.2	706	Aat/Cat																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192435	138192435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	43	385	1	ENST00000237289.4:c.71G>T	p.Arg24Ile	p.R24I	ENST00000237289	NM_001270507.1	24	aGa/aTa																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997696	149997696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	27	452	0	ENST00000253339.5:c.2771G>A	p.Arg924Gln	p.R924Q	ENST00000253339		924	cGa/cAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157488266	157488266	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	94	545	0	ENST00000346085.5:c.2972A>G	p.Asn991Ser	p.N991S	ENST00000346085	NM_020732.3	991	aAc/aGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55225369	55225369	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	42	625	0	ENST00000275493.2:c.1221T>G	p.Ile407Met	p.I407M	ENST00000275493	NM_005228.3	407	atT/atG																																																																														
MET	4233	MSKCC	GRCh37	7	116340068	116340068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	56	307	0	ENST00000397752.3:c.930G>T	p.Lys310Asn	p.K310N	ENST00000397752	NM_000245.2	310	aaG/aaT																																																																														
SMO	6608	MSKCC	GRCh37	7	128845577	128845577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	125	704	0	ENST00000249373.3:c.874G>A	p.Glu292Lys	p.E292K	ENST00000249373	NM_005631.4	292	Gag/Aag																																																																														
SMO	6608	MSKCC	GRCh37	7	128846014	128846014	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	138	846	1	ENST00000249373.3:c.944T>C	p.Val315Ala	p.V315A	ENST00000249373	NM_005631.4	315	gTc/gCc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481471	140481471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	82	760	0	ENST00000288602.6:c.1337C>T	p.Ser446Leu	p.S446L	ENST00000288602	NM_004333.4	446	tCg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864405	151864405	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	105	650	0	ENST00000262189.6:c.9576A>C	p.Gln3192His	p.Q3192H	ENST00000262189	NM_170606.2	3192	caA/caC																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205681	38205681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	46	833	0	ENST00000317025.8:c.9C>A	p.Phe3Leu	p.F3L	ENST00000317025	NM_023034.1	3	ttC/ttA																																																																														
LYN	4067	MSKCC	GRCh37	8	56854504	56854504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	49	550	1	ENST00000519728.1:c.86G>T	p.Arg29Ile	p.R29I	ENST00000519728	NM_002350.3	29	aGa/aTa																																																																														
LYN	4067	MSKCC	GRCh37	8	56866415	56866415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	42	650	0	ENST00000519728.1:c.662G>T	p.Arg221Ile	p.R221I	ENST00000519728	NM_002350.3	221	aGa/aTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942858	68942858	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	165	734	0	ENST00000288368.4:c.670T>G	p.Leu224Val	p.L224V	ENST00000288368	NM_024870.2	224	Tta/Gta																																																																														
PREX2	80243	MSKCC	GRCh37	8	68993020	68993020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	53	491	0	ENST00000288368.4:c.1825G>T	p.Asp609Tyr	p.D609Y	ENST00000288368	NM_024870.2	609	Gac/Tac																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981645	70981645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	211	1157	1	ENST00000276594.2:c.451C>A	p.Pro151Thr	p.P151T	ENST00000276594	NM_024504.3	151	Cca/Aca																																																																														
MYC	4609	MSKCC	GRCh37	8	128753155	128753155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	67	331	0	ENST00000377970.2:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000377970	NM_002467.4	439	cGa/cAa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072601	5072601	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	22	394	0	ENST00000381652.3:c.1751A>G	p.Asp584Gly	p.D584G	ENST00000381652	NM_004972.3	584	gAt/gGt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341925	8341925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	28	593	0	ENST00000356435.5:c.4715G>T	p.Arg1572Ile	p.R1572I	ENST00000356435		1572	aGa/aTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485310	8485310	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	24	485	0	ENST00000356435.5:c.3070T>G	p.Phe1024Val	p.F1024V	ENST00000356435		1024	Ttt/Gtt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528777	8528777	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	54	339	0	ENST00000356435.5:c.355G>A	p.Asp119Asn	p.D119N	ENST00000356435		119	Gat/Aat																																																																														
TEK	7010	MSKCC	GRCh37	9	27158005	27158005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	130	734	1	ENST00000380036.4:c.229G>T	p.Asp77Tyr	p.D77Y	ENST00000380036	NM_000459.3	77	Gat/Tat																																																																														
TEK	7010	MSKCC	GRCh37	9	27212761	27212761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	160	904	1	ENST00000380036.4:c.2743C>T	p.Arg915Cys	p.R915C	ENST00000380036	NM_000459.3	915	Cgc/Tgc																																																																														
TEK	7010	MSKCC	GRCh37	9	27229182	27229182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	39	710	0	ENST00000380036.4:c.3327G>T	p.Glu1109Asp	p.E1109D	ENST00000380036	NM_000459.3	1109	gaG/gaT																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80336400	80336400	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	75	473	0	ENST00000286548.4:c.919G>T	p.Glu307Ter	p.E307*	ENST00000286548	NM_002072.3	307	Gaa/Taa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80537181	80537181	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	60	517	1	ENST00000286548.4:c.217A>G	p.Arg73Gly	p.R73G	ENST00000286548	NM_002072.3	73	Agg/Ggg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908801	101908801	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	92	620	0	ENST00000374994.4:c.1165A>C	p.Asn389His	p.N389H	ENST00000374994	NM_004612.2	389	Aat/Cat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772658	135772658	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	46	783	0	ENST00000298552.3:c.2888T>C	p.Leu963Ser	p.L963S	ENST00000298552	NM_001162426.1	963	tTa/tCa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321286	1321286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	42	494	1	ENST00000381566.1:c.469G>A	p.Asp157Asn	p.D157N	ENST00000381566		157	Gac/Aac																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321386	1321386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	37	520	1	ENST00000381566.1:c.369G>T	p.Lys123Asn	p.K123N	ENST00000381566		123	aaG/aaT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39930944	39930944	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	48	462	0	ENST00000378444.4:c.2998-1G>T		p.X1000_splice	ENST00000378444	NM_001123385.1	1000																																																																															
BCOR	54880	MSKCC	GRCh37	X	39933787	39933787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	147	735	1	ENST00000378444.4:c.812C>T	p.Ser271Leu	p.S271L	ENST00000378444	NM_001123385.1	271	tCg/tTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966665	44966665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	56	471	0	ENST00000377967.4:c.3889C>A	p.Leu1297Ile	p.L1297I	ENST00000377967	NM_021140.2	1297	Cta/Ata																																																																														
ARAF	369	MSKCC	GRCh37	X	47430770	47430770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	153	936	1	ENST00000377045.4:c.1735C>T	p.Arg579Trp	p.R579W	ENST00000377045	NM_001654.4	579	Cgg/Tgg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650816	48650816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	55	876	0	ENST00000376670.3:c.685G>T	p.Gly229Cys	p.G229C	ENST00000376670	NM_002049.3	229	Ggc/Tgc																																																																														
MED12	9968	MSKCC	GRCh37	X	70342687	70342687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	135	801	0	ENST00000374080.3:c.1448G>T	p.Arg483Leu	p.R483L	ENST00000374080		483	cGa/cTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76829731	76829731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	94	728	0	ENST00000373344.5:c.6310G>T	p.Asp2104Tyr	p.D2104Y	ENST00000373344	NM_000489.3	2104	Gat/Tat																																																																														
ATRX	546	MSKCC	GRCh37	X	76938244	76938244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	47	838	0	ENST00000373344.5:c.2504G>T	p.Arg835Ile	p.R835I	ENST00000373344	NM_000489.3	835	aGa/aTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939468	76939468	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	143	963	1	ENST00000373344.5:c.1280A>T	p.Lys427Ile	p.K427I	ENST00000373344	NM_000489.3	427	aAa/aTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76949345	76949345	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	64	726	0	ENST00000373344.5:c.452A>C	p.Lys151Thr	p.K151T	ENST00000373344	NM_000489.3	151	aAa/aCa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176443	123176443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	23	446	0	ENST00000218089.9:c.410G>A	p.Arg137Lys	p.R137K	ENST00000218089	NM_001042749.1	137	aGa/aAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123227989	123227989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	45	486	0	ENST00000218089.9:c.3700G>T	p.Asp1234Tyr	p.D1234Y	ENST00000218089	NM_001042749.1	1234	Gat/Tat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47139572	47139572	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	18	312	0	ENST00000409792.3:c.5016-1G>T		p.X1672_splice	ENST00000409792	NM_014159.6	1672																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	100	297	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	53	113	0				ENST00000310581	NM_198253.2																																																																																
CSF3R	1441	MSKCC	GRCh37	1	36933755	36933756	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0037622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	36	557	0	ENST00000361632.4:c.1643_1644del	p.Val548AlafsTer2	p.V548Afs*2	ENST00000361632		548	gTG/g																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	130	712	0	ENST00000371085.3:c.680A>T	p.Gln227Leu	p.Q227L	ENST00000371085	NM_000516.4	227	cAg/cTg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56871638	56871638	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs199837299		P-0037688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	36	437	1	ENST00000308159.5:c.2018G>A	p.Arg673Gln	p.R673Q	ENST00000308159	NM_014669.4	673	cGg/cAg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56867237	56867237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138281575		P-0037688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	185	625	1	ENST00000308159.5:c.1456C>T	p.Arg486Cys	p.R486C	ENST00000308159	NM_014669.4	486	Cgc/Tgc																																																																														
CDH1	999	MSKCC	GRCh37	16	68867320	68867321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0037688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	125	666	0	ENST00000261769.5:c.2569dup	p.Gln857ProfsTer4	p.Q857Pfs*4	ENST00000261769	NM_004360.3	856	gac/gaCc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290067	15290067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	71	913	1	ENST00000263388.2:c.3487G>T	p.Asp1163Tyr	p.D1163Y	ENST00000263388	NM_000435.2	1163	Gac/Tac																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	112	275	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	182	343	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	147	267	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436297	110436305	+	inframe_deletion	In_Frame_Del	DEL	CGGCGGCGG	CGGCGGCGG	-			P-0034363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	118	129	0	ENST00000375856.3:c.2096_2104delCCGCCGCCG	p.Ala699_Ala701del	p.A699_A701del	ENST00000375856	NM_003749.2	699	gCCGCCGCCGtg/gtg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158617589	158617589	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	130	282	0	ENST00000263640.3:c.1067G>A	p.Gly356Asp	p.G356D	ENST00000263640	NM_001105.4	356	gGc/gAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057850	27057850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	314	585	0	ENST00000324856.7:c.1558C>T	p.Gln520Ter	p.Q520*	ENST00000324856	NM_006015.4	520	Cag/Tag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851574	134851574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	192	383	0	ENST00000398015.3:c.980G>A	p.Arg327His	p.R327H	ENST00000398015	NM_004441.4	327	cGc/cAc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273869	18273869	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	259	523	0	ENST00000222254.8:c.1202T>G	p.Leu401Arg	p.L401R	ENST00000222254	NM_005027.3	401	cTc/cGc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514650	103514650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	147	293	0	ENST00000355739.4:c.1151C>T	p.Ser384Leu	p.S384L	ENST00000355739	NM_000123.3	384	tCa/tTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106994	27106998	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTT	GCCTT	-			P-0034363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	180	361	0	ENST00000324856.7:c.6608_6612del	p.Leu2203ArgfsTer20	p.L2203Rfs*20	ENST00000324856	NM_006015.4	2202	aGCCTT/a																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654607	67654607	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	214	368	0	ENST00000264010.4:c.1094A>C	p.Lys365Thr	p.K365T	ENST00000264010	NM_006565.3	365	aAa/aCa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591039	67591040	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTGGAAGAAGAC			P-0034363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	60	204	0	ENST00000274335.5:c.1636_1647dup	p.Glu546_Leu549dup	p.E546_L549dup	ENST00000274335		546	-/TTGGAAGAAGAC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720798	89720801	+	frameshift_variant	Frame_Shift_Del	DEL	GTAC	GTAC	AG			P-0034363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	51	157	1	ENST00000371953.3:c.949_952delinsAG	p.Val317SerfsTer7	p.V317Sfs*7	ENST00000371953	NM_000314.4	317	GTACtt/AGtt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945331	71945331	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036014-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			203	236	817	0	ENST00000298229.2:c.2219C>G	p.Ser740Ter	p.S740*	ENST00000298229	NM_001567.3	740	tCa/tGa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832744	3832744	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036014-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			703	58	612	0	ENST00000262367.5:c.1514del	p.Pro505LeufsTer14	p.P505Lfs*14	ENST00000262367	NM_004380.2	505	cCt/ct																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10267110	10267114	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAA	AGAAA	-			P-0036014-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	226	584	0	ENST00000340748.4:c.1304_1308del	p.Phe435TrpfsTer8	p.F435Wfs*8	ENST00000340748		435	tTTTCT/t																																																																														
TAP2	6891	MSKCC	GRCh37	6	32802929	32802929	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036014-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	22	382	0	ENST00000374899.4:c.945+2T>C		p.X315_splice	ENST00000374899	NM_018833.2	315																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137524800	137524801	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036014-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	143	502	0	ENST00000367739.4:c.568dup	p.Gln190ProfsTer5	p.Q190Pfs*5	ENST00000367739	NM_000416.2	190	cag/cCag																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981455	70981455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036014-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			943	341	944	0	ENST00000276594.2:c.641A>G	p.Glu214Gly	p.E214G	ENST00000276594	NM_024504.3	214	gAg/gGg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128434754	128434754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036014-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	224	724	0	ENST00000265960.3:c.100C>T	p.His34Tyr	p.H34Y	ENST00000265960	NM_001006617.1	34	Cat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	88	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	86	455	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	57	212	0	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076862	41076862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	151	389	0	ENST00000373198.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000373198	NM_133170.3	520	Gag/Aag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	258	365	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184592	11184592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	112	542	0	ENST00000361445.4:c.6625C>G	p.Leu2209Val	p.L2209V	ENST00000361445	NM_004958.3	2209	Ctg/Gtg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274610	198274610	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139577219		P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	236	551	0	ENST00000335508.6:c.788C>T	p.Ala263Val	p.A263V	ENST00000335508	NM_012433.2	263	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112173531	112173531	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	57	314	0	ENST00000257430.4:c.2240C>G	p.Ser747Ter	p.S747*	ENST00000257430	NM_000038.5	747	tCa/tGa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59886111	59886111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	83	342	0	ENST00000259008.2:c.635G>A	p.Gly212Asp	p.G212D	ENST00000259008	NM_032043.2	212	gGc/gAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918753	50918753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	102	670	0	ENST00000440232.2:c.2623C>T	p.Arg875Cys	p.R875C	ENST00000440232	NM_002691.3	875	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	256	553	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	73	632	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163297333	163297333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	30	577	1	ENST00000271452.3:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000271452	NM_145697.2	60	cGa/cAa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123256158	123256158	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	26	598	0	ENST00000358487.5:c.1751T>A	p.Met584Lys	p.M584K	ENST00000358487	NM_000141.4	584	aTg/aAg																																																																														
CBL	867	MSKCC	GRCh37	11	119103203	119103203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	41	563	0	ENST00000264033.4:c.241C>T	p.Pro81Ser	p.P81S	ENST00000264033	NM_005188.3	81	Cca/Tca																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060939	38060939	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	46	394	0	ENST00000250448.2:c.1050G>C	p.Lys350Asn	p.K350N	ENST00000250448	NM_004496.3	350	aaG/aaC																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58677800	58677800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	79	604	3	ENST00000305921.3:c.25G>T	p.Val9Leu	p.V9L	ENST00000305921	NM_003620.3	9	Gtg/Ttg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610526	10610526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	87	785	0	ENST00000171111.5:c.184C>T	p.Gln62Ter	p.Q62*	ENST00000171111	NM_203500.1	62	Cag/Tag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18274088	18274088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	45	537	1	ENST00000222254.8:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000222254	NM_005027.3	436	Gag/Aag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661749	227661749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	44	638	1	ENST00000305123.5:c.1706C>A	p.Pro569Gln	p.P569Q	ENST00000305123	NM_005544.2	569	cCg/cAg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662158	227662158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	45	628	0	ENST00000305123.5:c.1297T>C	p.Ser433Pro	p.S433P	ENST00000305123	NM_005544.2	433	Tcc/Ccc																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799468	72799468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	61	756	0	ENST00000325599.8:c.1701G>T	p.Gln567His	p.Q567H	ENST00000325599	NM_018130.2	567	caG/caT																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156709	55156709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	27	369	1	ENST00000257290.5:c.3110G>C	p.Arg1037Thr	p.R1037T	ENST00000257290	NM_006206.4	1037	aGg/aCg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280128	66280128	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	40	420	0	ENST00000273854.3:c.1561A>C	p.Lys521Gln	p.K521Q	ENST00000273854	NM_004439.5	521	Aaa/Caa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007296	143007296	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	54	524	0	ENST00000262992.4:c.2487+1G>T		p.X829_splice	ENST00000262992	NM_001101669.1	829																																																																															
FAT1	2195	MSKCC	GRCh37	4	187509966	187509966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	62	545	0	ENST00000441802.2:c.13547A>G	p.His4516Arg	p.H4516R	ENST00000441802	NM_005245.3	4516	cAt/cGt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79966110	79966110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	82	545	0	ENST00000265081.6:c.774C>A	p.Phe258Leu	p.F258L	ENST00000265081	NM_002439.4	258	ttC/ttA																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933121	39933121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	60	847	0	ENST00000378444.4:c.1478G>T	p.Gly493Val	p.G493V	ENST00000378444	NM_001123385.1	493	gGt/gTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32165349	32165399	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGACATCAGGGGTGTCACCCCATCTGTTGGTAAGACAGAGTAATGGGTCAA	TGACATCAGGGGTGTCACCCCATCTGTTGGTAAGACAGAGTAATGGGTCAA	CACGCCTGGCTAATTTTGTAGAGAGGGGGTTTTGCCATG			P-0036885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	98	709	0	ENST00000375023.3:c.4757-28_4779delinsCATGGCAAAACCCCCTCTCTACAAAATTAGCCAGGCGTG		p.X1586_splice	ENST00000375023	NM_004557.3	1586																																																																															
TP53	7157	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0036886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	320	726	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30396600	30396600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	45	207	0	ENST00000331968.5:c.119C>G	p.Ala40Gly	p.A40G	ENST00000331968	NM_002742.2	40	gCt/gGt																																																																														
MST1	4485	MSKCC	GRCh37	3	49724991	49724991	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0036886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	118	498	0	ENST00000449682.2:c.353A>T	p.Lys118Ile	p.K118I	ENST00000449682	NM_020998.3	118	aAa/aTa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031900	26031900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	78	412	0	ENST00000244661.2:c.389G>A	p.Arg130His	p.R130H	ENST00000244661	NM_003537.3	130	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	244	643	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	215	735	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25457242	25457242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147001633		P-0037296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	202	675	3	ENST00000264709.3:c.2645G>A	p.Arg882His	p.R882H	ENST00000264709	NM_175629.2	882	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	339	448	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																														
SMO	6608	MSKCC	GRCh37	7	128851900	128851900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	231	823	0	ENST00000249373.3:c.1972G>A	p.Glu658Lys	p.E658K	ENST00000249373	NM_005631.4	658	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445068	49445068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	196	645	0	ENST00000301067.7:c.2398C>T	p.Gln800Ter	p.Q800*	ENST00000301067	NM_003482.3	800	Cag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76939843	76939843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	147	386	0	ENST00000373344.5:c.905G>T	p.Ser302Ile	p.S302I	ENST00000373344	NM_000489.3	302	aGt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	346	623	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672758	86672758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	118	353	0	ENST00000274376.6:c.2245C>T	p.Arg749Ter	p.R749*	ENST00000274376	NM_002890.2	749	Cga/Tga																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932274	36932274	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	381	689	1	ENST00000361632.4:c.2195A>T	p.Asp732Val	p.D732V	ENST00000361632		732	gAc/gTc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332741	70332741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	283	466	0	ENST00000373644.4:c.646G>T	p.Gly216Trp	p.G216W	ENST00000373644	NM_030625.2	216	Ggg/Tgg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77064582	77064582	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	272	467	0	ENST00000356341.3:c.835G>T	p.Gly279Cys	p.G279C	ENST00000356341	NM_002576.4	279	Ggt/Tgt																																																																														
AKT1	207	MSKCC	GRCh37	14	105239420	105239420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	496	533	0	ENST00000349310.3:c.967G>T	p.Asp323Tyr	p.D323Y	ENST00000349310	NM_001014432.1	323	Gac/Tac																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819735	81819735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	294	464	0	ENST00000359376.3:c.141G>C	p.Met47Ile	p.M47I	ENST00000359376	NM_002661.3	47	atG/atC																																																																														
NF1	4763	MSKCC	GRCh37	17	29670120	29670120	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	232	454	0	ENST00000358273.4:c.7156T>A	p.Phe2386Ile	p.F2386I	ENST00000358273	NM_001042492.2	2386	Ttt/Att																																																																														
APC	324	MSKCC	GRCh37	5	112176194	112176194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	226	379	0	ENST00000257430.4:c.4903G>T	p.Gly1635Trp	p.G1635W	ENST00000257430	NM_000038.5	1635	Ggg/Tgg																																																																														
MYC	4609	MSKCC	GRCh37	8	128752965	128752965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	104	377	0	ENST00000377970.2:c.1126G>A	p.Val376Ile	p.V376I	ENST00000377970	NM_002467.4	376	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	14	653	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	22	517	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624918	9624918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	15	425	0	ENST00000353224.5:c.59G>A	p.Arg20Lys	p.R20K	ENST00000353224	NM_177990.2	20	aGg/aAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120471599	120471599	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	13	276	0	ENST00000256646.2:c.3892G>A	p.Gly1298Ser	p.G1298S	ENST00000256646	NM_024408.3	1298	Ggc/Agc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865242	57865242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	21	648	1	ENST00000228682.2:c.2719G>A	p.Glu907Lys	p.E907K	ENST00000228682	NM_005269.2	907	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829887	72829887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	21	666	0	ENST00000268489.5:c.6694G>A	p.Glu2232Lys	p.E2232K	ENST00000268489	NM_006885.3	2232	Gaa/Aaa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075269	16075269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	19	395	2	ENST00000268712.3:c.283G>A	p.Gly95Ser	p.G95S	ENST00000268712	NM_006311.3	95	Ggc/Agc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086121	16086121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	24	446	0	ENST00000281043.3:c.1297C>T	p.Leu433Phe	p.L433F	ENST00000281043	NM_005378.4	433	Ctc/Ttc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182135	99182135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	12	415	0	ENST00000074304.5:c.2200C>T	p.Leu734Phe	p.L734F	ENST00000074304	NM_001134224.1	734	Ctt/Ttt																																																																														
EP300	2033	MSKCC	GRCh37	22	41572913	41572913	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	22	634	0	ENST00000263253.7:c.5198T>C	p.Leu1733Pro	p.L1733P	ENST00000263253	NM_001429.3	1733	cTg/cCg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729896	30729897	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	15	280	0	ENST00000359013.4:c.1492_1493delinsTT	p.Pro498Leu	p.P498L	ENST00000359013	NM_001024847.2	498	CCa/TTa																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430489	181430489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	12	435	0	ENST00000325404.1:c.341G>A	p.Arg114Gln	p.R114Q	ENST00000325404	NM_003106.3	114	cGg/cAg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450371	50450372	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	18	407	2	ENST00000331340.3:c.555_556delinsAA	p.Asp186Asn	p.D186N	ENST00000331340	NM_006060.4	185	agGGac/agAAac																																																																														
TEK	7010	MSKCC	GRCh37	9	27206730	27206730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	22	484	0	ENST00000380036.4:c.2515C>T	p.Leu839Phe	p.L839F	ENST00000380036	NM_000459.3	839	Ctt/Ttt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404328	139404328	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	25	746	1	ENST00000277541.6:c.2826T>G	p.Cys942Trp	p.C942W	ENST00000277541	NM_017617.3	942	tgT/tgG																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418387	139418387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	25	837	1	ENST00000277541.6:c.185C>T	p.Pro62Leu	p.P62L	ENST00000277541	NM_017617.3	62	cCg/cTg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426675	47426675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	27	306	0	ENST00000377045.4:c.920C>T	p.Pro307Leu	p.P307L	ENST00000377045	NM_001654.4	307	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	314	503	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
INSR	3643	MSKCC	GRCh37	19	7267836	7267836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	129	432	0	ENST00000302850.5:c.172G>A	p.Gly58Arg	p.G58R	ENST00000302850	NM_000208.2	58	Gga/Aga																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927989	49927989	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374259168		P-0037319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	161	472	1	ENST00000296474.3:c.3739G>A	p.Ala1247Thr	p.A1247T	ENST00000296474	NM_002447.2	1247	Gct/Act																																																																														
APC	324	MSKCC	GRCh37	5	112128142	112128144	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GCG	GCG	-			P-0037319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	146	187	0	ENST00000257430.4:c.646-1_647del		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057573	180057573	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	178	573	0	ENST00000261937.6:c.382T>C	p.Ser128Pro	p.S128P	ENST00000261937	NM_182925.4	128	Tcc/Ccc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922762	44922762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	80	318	0	ENST00000377967.4:c.1623G>T	p.Gln541His	p.Q541H	ENST00000377967	NM_021140.2	541	caG/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	470	582	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	238	561	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
ATRX	546	MSKCC	GRCh37	X	76940000	76940000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	123	288	0	ENST00000373344.5:c.748C>T	p.Arg250Ter	p.R250*	ENST00000373344	NM_000489.3	250	Cga/Tga																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740098	162740098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	100	305	0	ENST00000367921.3:c.1300C>T	p.Arg434Trp	p.R434W	ENST00000367921	NM_006182.2	434	Cgg/Tgg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753752	42753757	+	inframe_deletion	In_Frame_Del	DEL	GAAGAT	GAAGAT	-			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	60	723	0	ENST00000222329.4:c.507_512del	p.Ser170_Ser171del	p.S170_S171del	ENST00000222329	NM_006494.2	169	tcATCTTCc/tcc																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271209	26271209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	135	332	0	ENST00000305910.3:c.404G>A	p.Arg135Lys	p.R135K	ENST00000305910	NM_003534.2	135	aGa/aAa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276633	115276633	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	126	541	0	ENST00000438362.2:c.826G>C	p.Glu276Gln	p.E276Q	ENST00000438362	NM_001242891.1	276	Gaa/Caa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983065	201983065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	303	652	0	ENST00000359651.3:c.914T>C	p.Phe305Ser	p.F305S	ENST00000359651		305	tTc/tCc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37649115	37649115	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	73	342	0	ENST00000447079.4:c.2220A>T	p.Gln740His	p.Q740H	ENST00000447079	NM_015083.1	740	caA/caT																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72873575	72873575	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	23	380	0	ENST00000325599.8:c.727G>C	p.Val243Leu	p.V243L	ENST00000325599	NM_018130.2	243	Gtg/Ctg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231668	66231668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	62	428	0	ENST00000273854.3:c.2032G>C	p.Glu678Gln	p.E678Q	ENST00000273854	NM_004439.5	678	Gag/Cag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39021200	39021200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	97	405	2	ENST00000357387.3:c.136G>T	p.Ala46Ser	p.A46S	ENST00000357387	NM_152756.3	46	Gcc/Tcc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411182	63411182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	231	328	0	ENST00000330258.3:c.1985C>T	p.Ser662Leu	p.S662L	ENST00000330258	NM_152424.3	662	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	76	363	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	98	548	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	36	268	2	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111012	193111012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	30	164	0	ENST00000367435.3:c.545T>A	p.Ile182Asn	p.I182N	ENST00000367435	NM_024529.4	182	aTt/aAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3795351	3795351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201874248		P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	34	241	1	ENST00000262367.5:c.3841G>A	p.Val1281Ile	p.V1281I	ENST00000262367	NM_004380.2	1281	Gtt/Att																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808911	3808911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	107	491	0	ENST00000262367.5:c.3313G>T	p.Asp1105Tyr	p.D1105Y	ENST00000262367	NM_004380.2	1105	Gac/Tac																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205019	128205019	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	53	548	0	ENST00000341105.2:c.422A>G	p.Tyr141Cys	p.Y141C	ENST00000341105	NM_032638.4	141	tAc/tGc																																																																														
ATR	545	MSKCC	GRCh37	3	142204115	142204115	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201091477		P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	56	363	0	ENST00000350721.4:c.6088G>A	p.Ala2030Thr	p.A2030T	ENST00000350721	NM_001184.3	2030	Gcg/Acg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557967	187557967	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	24	380	0	ENST00000441802.2:c.3744del	p.Lys1248AsnfsTer28	p.K1248Nfs*28	ENST00000441802	NM_005245.3	1248	aaG/aa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0037101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	1024	544	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0037101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	251	674	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117707	70117707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	376	702	0	ENST00000245479.2:c.175G>A	p.Asp59Asn	p.D59N	ENST00000245479	NM_000346.3	59	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108160489	108160489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	94	597	0	ENST00000278616.4:c.4397G>C	p.Arg1466Pro	p.R1466P	ENST00000278616	NM_000051.3	1466	cGa/cCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577088	7577088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	353	780	0	ENST00000269305.4:c.850A>C	p.Thr284Pro	p.T284P	ENST00000269305	NM_001126112.2	284	Aca/Cca																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437384	110437384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	651	283	0	ENST00000375856.3:c.1017del	p.Arg340AlafsTer51	p.R340Afs*51	ENST00000375856	NM_003749.2	339	gtG/gt																																																																														
BLM	641	MSKCC	GRCh37	15	91292803	91292803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	262	487	2	ENST00000355112.3:c.305G>T	p.Gly102Val	p.G102V	ENST00000355112	NM_000057.2	102	gGt/gTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786144	3786144	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	402	778	0	ENST00000262367.5:c.4621G>C	p.Glu1541Gln	p.E1541Q	ENST00000262367	NM_004380.2	1541	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577606	7577615	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACCTAGGAG	AACCTAGGAG	-			P-0037101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	575	565	0	ENST00000269305.4:c.673-7_675del		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36220138	36220138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1574	391	817	0	ENST00000222270.7:c.4858G>C	p.Glu1620Gln	p.E1620Q	ENST00000222270	NM_014727.1	1620	Gag/Cag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919929	50919929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1530	382	778	1	ENST00000440232.2:c.3016G>A	p.Ala1006Thr	p.A1006T	ENST00000440232	NM_002691.3	1006	Gcc/Acc																																																																														
ATR	545	MSKCC	GRCh37	3	142185372	142185372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	147	294	0	ENST00000350721.4:c.6691G>A	p.Asp2231Asn	p.D2231N	ENST00000350721	NM_001184.3	2231	Gat/Aat																																																																														
TET2	54790	MSKCC	GRCh37	4	106157168	106157168	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0037101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	117	395	0	ENST00000380013.4:c.2069A>T	p.Gln690Leu	p.Q690L	ENST00000380013	NM_001127208.2	690	cAa/cTa																																																																														
STK11	6794	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0037149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	124	464	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24133958	24133958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	17	218	0	ENST00000263121.7:c.109C>T	p.Arg37Cys	p.R37C	ENST00000263121	NM_003073.3	37	Cgt/Tgt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547198	106547198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	54	233	0	ENST00000369096.4:c.435C>A	p.His145Gln	p.H145Q	ENST00000369096	NM_001198.3	145	caC/caA																																																																														
FYN	2534	MSKCC	GRCh37	6	112017597	112017597	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	45	459	0	ENST00000368678.4:c.916del	p.Glu306AsnfsTer10	p.E306Nfs*10	ENST00000368678		306	Gaa/aa																																																																														
FANCC	2176	MSKCC	GRCh37	9	97934393	97934393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	20	270	0	ENST00000289081.3:c.382G>C	p.Asp128His	p.D128H	ENST00000289081	NM_000136.2	128	Gat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0037161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	260	550	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
AKT3	10000	MSKCC	GRCh37	1	243675668	243675668	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0037161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	46	445	0	ENST00000263826.5:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000263826	NM_005465.4	438	Gaa/Taa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726671	88726671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	39	417	0	ENST00000360948.2:c.373A>G	p.Lys125Glu	p.K125E	ENST00000360948	NM_001012338.2	125	Aag/Gag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044985	47044985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0037161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	73	364	0	ENST00000329236.7:c.2079del	p.Glu694ArgfsTer30	p.E694Rfs*30	ENST00000329236	NM_001204466.1	693	Aaa/aa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150022977	150022977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55945045		P-0006799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	105	610	0	ENST00000253339.5:c.286C>T	p.Arg96Trp	p.R96W	ENST00000253339		96	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	29606696	29606696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	85	537	0	ENST00000389048.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000389048	NM_004304.4	395	cGt/cAt																																																																														
AR	367	MSKCC	GRCh37	X	66931504	66931504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3852	3066	370	1	ENST00000374690.3:c.2146G>A	p.Val716Met	p.V716M	ENST00000374690	NM_000044.3	716	Gtg/Atg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464410	120464421	+	inframe_deletion	In_Frame_Del	DEL	CTGAGACTTGCA	CTGAGACTTGCA	-			P-0017169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	109	734	0	ENST00000256646.2:c.5225_5236del	p.Val1742_Ser1745del	p.V1742_S1745del	ENST00000256646	NM_024408.3	1742	gTGCAAGTCTCAGaa/gaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431254	49431258	+	frameshift_variant	Frame_Shift_Del	DEL	CATGG	CATGG	-			P-0017169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	173	445	0	ENST00000301067.7:c.9881_9885del	p.Ala3294ValfsTer5	p.A3294Vfs*5	ENST00000301067	NM_003482.3	3294	gCCATG/g																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274157	10274158	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0017169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	196	566	0	ENST00000330684.3:c.111_112delinsTT	p.Val38Leu	p.V38L	ENST00000330684	NM_001134407.1	37	gcGGtg/gcTTtg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056353	26056353	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	55	391	0	ENST00000343677.2:c.304del	p.Ser102LeufsTer65	p.S102Lfs*65	ENST00000343677	NM_005319.3	102	Tct/ct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188758	32188758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	138	613	0	ENST00000375023.3:c.796C>A	p.Pro266Thr	p.P266T	ENST00000375023	NM_004557.3	266	Cca/Aca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	63	543	1				ENST00000310581	NM_198253.2																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3779191	3779191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	83	613	2	ENST00000262367.5:c.5857C>T	p.Pro1953Ser	p.P1953S	ENST00000262367	NM_004380.2	1953	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	94	549	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139395074	139395074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	278	913	2	ENST00000277541.6:c.5864A>G	p.Asn1955Ser	p.N1955S	ENST00000277541	NM_017617.3	1955	aAc/aGc																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89790776	89790776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	303	1086	2	ENST00000336032.3:c.163C>T	p.Leu55Phe	p.L55F	ENST00000336032	NM_006813.2	55	Ctc/Ttc																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675112	40675112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	143	989	0	ENST00000249776.8:c.76C>T	p.Pro26Ser	p.P26S	ENST00000249776	NM_033286.3	26	Cca/Tca																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713205	30713205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	80	411	0	ENST00000359013.4:c.605G>A	p.Gly202Glu	p.G202E	ENST00000359013	NM_001024847.2	202	gGa/gAa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120496297	120496297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	60	443	0	ENST00000256646.2:c.2234G>T	p.Cys745Phe	p.C745F	ENST00000256646	NM_024408.3	745	tGt/tTt																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94204855	94204855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	102	516	0	ENST00000323929.3:c.730G>A	p.Gly244Ser	p.G244S	ENST00000323929	NM_005591.3	244	Ggc/Agc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374285	118374285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	89	445	0	ENST00000534358.1:c.7678G>A	p.Glu2560Lys	p.E2560K	ENST00000534358	NM_005933.3	2560	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245376	46245376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	78	508	0	ENST00000334344.6:c.3470C>T	p.Ser1157Leu	p.S1157L	ENST00000334344	NM_152641.2	1157	tCa/tTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46298782	46298783	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	71	356	0	ENST00000334344.6:c.5429_5430delinsTT	p.Thr1810Ile	p.T1810I	ENST00000334344	NM_152641.2	1810	aCC/aTT																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610588	81610588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	73	300	0	ENST00000298171.2:c.2186G>A	p.Arg729Lys	p.R729K	ENST00000298171	NM_000369.2	729	aGg/aAg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610660	81610660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	63	310	0	ENST00000298171.2:c.2258G>A	p.Gly753Asp	p.G753D	ENST00000298171	NM_000369.2	753	gGc/gAc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50827460	50827460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	91	368	0	ENST00000398568.2:c.2345C>T	p.Pro782Leu	p.P782L	ENST00000398568	NM_001042412.1	782	cCc/cTc																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33430500	33430501	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	115	698	2	ENST00000335858.7:c.303_304delinsTT	p.Pro102Ser	p.P102S	ENST00000335858	NM_133629.2	101	tcCCca/tcTTca																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246903	10246903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	143	966	2	ENST00000340748.4:c.4502C>T	p.Pro1501Leu	p.P1501L	ENST00000340748		1501	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296080	15296080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	152	951	0	ENST00000263388.2:c.2284C>T	p.Pro762Ser	p.P762S	ENST00000263388	NM_000435.2	762	Cct/Tct																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355099	15355099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	189	1155	3	ENST00000263377.2:c.2524C>T	p.Pro842Ser	p.P842S	ENST00000263377	NM_058243.2	842	Ccg/Tcg																																																																														
RRAS	6237	MSKCC	GRCh37	19	50138855	50138855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	211	1157	0	ENST00000246792.3:c.635G>A	p.Gly212Asp	p.G212D	ENST00000246792	NM_006270.3	212	gGc/gAc																																																																														
ALK	238	MSKCC	GRCh37	2	29474088	29474088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	152	780	0	ENST00000389048.3:c.2087C>T	p.Pro696Leu	p.P696L	ENST00000389048	NM_004304.4	696	cCc/cTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944543	40944544	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	75	532	0	ENST00000373198.4:c.1958_1959delinsAA	p.Arg653Gln	p.R653Q	ENST00000373198	NM_133170.3	653	cGG/cAA																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268835	41268835	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	116	454	0	ENST00000349496.5:c.1073del	p.Val358GlufsTer9	p.V358Efs*9	ENST00000349496	NM_001904.3	358	gTa/ga																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72890215	72890215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	87	496	0	ENST00000325599.8:c.467G>T	p.Gly156Val	p.G156V	ENST00000325599	NM_018130.2	156	gGa/gTa																																																																														
TP63	8626	MSKCC	GRCh37	3	189582058	189582058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	97	446	0	ENST00000264731.3:c.617C>A	p.Ala206Glu	p.A206E	ENST00000264731	NM_003722.4	206	gCa/gAa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1795726	1795726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	42	418	0	ENST00000260795.2:c.65C>T	p.Ser22Leu	p.S22L	ENST00000260795		22	tCg/tTg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807114	1807114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	147	964	2	ENST00000260795.2:c.1445G>T	p.Cys482Phe	p.C482F	ENST00000260795		482	tGc/tTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55597524	55597524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	92	420	1	ENST00000288135.5:c.2172G>A	p.Met724Ile	p.M724I	ENST00000288135	NM_000222.2	724	atG/atA																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007329	143007329	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	195	535	0	ENST00000262992.4:c.2455A>C	p.Lys819Gln	p.K819Q	ENST00000262992	NM_001101669.1	819	Aag/Cag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541795	187541808	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTGGGTAAACTT	TCCTGGGTAAACTT	-			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	168	511	0	ENST00000441802.2:c.5932_5945del	p.Lys1978CysfsTer28	p.K1978Cfs*28	ENST00000441802	NM_005245.3	1978	AAGTTTACCCAGGAt/t																																																																														
E2F3	1871	MSKCC	GRCh37	6	20490506	20490506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	100	599	0	ENST00000346618.3:c.1243C>T	p.Pro415Ser	p.P415S	ENST00000346618	NM_001949.4	415	Cct/Tct																																																																														
ETV1	2115	MSKCC	GRCh37	7	14017076	14017076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	57	360	1	ENST00000405192.2:c.211G>T	p.Val71Leu	p.V71L	ENST00000405192	NM_001163147.1	71	Gta/Tta																																																																														
MET	4233	MSKCC	GRCh37	7	116340071	116340072	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	43	250	0	ENST00000397752.3:c.933_934delinsAA	p.Glu312Lys	p.E312K	ENST00000397752	NM_000245.2	311	aaGGaa/aaAAaa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239064	98239064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	180	461	0	ENST00000331920.6:c.1579C>A	p.Gln527Lys	p.Q527K	ENST00000331920	NM_000264.3	527	Cag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399537	139399537	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	243	914	0	ENST00000277541.6:c.4606T>G	p.Cys1536Gly	p.C1536G	ENST00000277541	NM_017617.3	1536	Tgc/Ggc																																																																														
MSI2	124540	MSKCC	GRCh37	17	55693432	55693472	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATGGGGATGCTGGGTGAGTCTGGACAGGACCGCAGGTCAC	CATGGGGATGCTGGGTGAGTCTGGACAGGACCGCAGGTCAC	-			P-0037117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	75	696	0	ENST00000284073.2:c.644_652+32del		p.X215_splice	ENST00000284073	NM_138962.2	215																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0026589-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	49	283	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
SESN3	143686	MSKCC	GRCh37	11	94917634	94917635	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0026589-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	114	598	0	ENST00000536441.1:c.886_887del	p.Glu296LysfsTer19	p.E296Kfs*19	ENST00000536441	NM_144665.3	296	GAa/a																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	129	465	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	231	775	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578415	7578415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	175	624	0	ENST00000269305.4:c.515T>A	p.Val172Asp	p.V172D	ENST00000269305	NM_001126112.2	172	gTt/gAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	139	484	1	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0036883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	172	386	0	ENST00000304494.5:c.150+1G>T		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0036883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	172	386	0	ENST00000304494.5:c.150+1G>T		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31468154	31468154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	176	443	2	ENST00000344624.3:c.2258G>A	p.Arg753His	p.R753H	ENST00000344624		753	cGt/cAt																																																																														
ABL1	25	MSKCC	GRCh37	9	133750323	133750323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	64	469	0	ENST00000318560.5:c.1154G>A	p.Ser385Asn	p.S385N	ENST00000318560	NM_005157.4	385	aGc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	141	567	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742837	17742837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	18	599	0	ENST00000250003.3:c.745C>A	p.Leu249Ile	p.L249I	ENST00000250003	NM_002478.4	249	Cta/Ata																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625335	69625335	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	20	619	0	ENST00000334134.2:c.458G>A	p.Trp153Ter	p.W153*	ENST00000334134	NM_005247.2	153	tGg/tAg																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628495	21628495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	28	530	0	ENST00000421138.2:c.1123G>A	p.Gly375Ser	p.G375S	ENST00000421138		375	Ggt/Agt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495770	56495770	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	70	448	0	ENST00000267101.3:c.3960C>G	p.Asp1320Glu	p.D1320E	ENST00000267101	NM_001982.3	1320	gaC/gaG																																																																														
MGA	23269	MSKCC	GRCh37	15	41991265	41991275	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGAGCAAGA	ACAGAGCAAGA	-			P-0036961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	49	420	0	ENST00000219905.7:c.2097_2107del	p.Arg700PhefsTer41	p.R700Ffs*41	ENST00000219905	NM_001164273.1	699	tACAGAGCAAGA/t																																																																														
B2M	567	MSKCC	GRCh37	15	45003599	45003784	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	CTCTCTCTAACCTGGCACTGCGTCGCTGGCTTGGAGACAGGTGACGGTCCCTGCGGGCCTTGTCCTGATTGGCTGGGCACGCGTTTAATATAAGTGGAGGCGTCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCT	CTCTCTCTAACCTGGCACTGCGTCGCTGGCTTGGAGACAGGTGACGGTCCCTGCGGGCCTTGTCCTGATTGGCTGGGCACGCGTTTAATATAAGTGGAGGCGTCGCGCTGGCGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCT	-			P-0036961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	112	33	0				ENST00000558401	NM_004048.2			1/4																																																																													
RTEL1	51750	MSKCC	GRCh37	20	62324177	62324177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	36	533	0	ENST00000508582.2:c.2744C>T	p.Ala915Val	p.A915V	ENST00000508582		915	gCa/gTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006836	47006836	+	5_prime_UTR_variant	5'UTR	SNP	C	C	T			P-0036870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	76	330	1	ENST00000329236.7:c.-45C>T		p.*15*	ENST00000329236	NM_001204466.1	15																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022903	31022903	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	31	622	0	ENST00000375687.4:c.2388G>A	p.Trp796Ter	p.W796*	ENST00000375687	NM_015338.5	796	tgG/tgA																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71027051	71027051	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	CTG			P-0036870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	109	587	0	ENST00000318789.4:c.1276delinsCAG	p.Thr426GlnfsTer49	p.T426Qfs*49	ENST00000318789	NM_032682.5	426	Acc/CAGcc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209110083	209110083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001258-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	53	483	0	ENST00000345146.2:c.480C>G	p.Asp160Glu	p.D160E	ENST00000345146	NM_005896.2	160	gaC/gaG																																																																														
ESR1	2099	MSKCC	GRCh37	6	152415537	152415537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001258-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	174	465	0	ENST00000206249.3:c.1387T>C	p.Ser463Pro	p.S463P	ENST00000206249	NM_000125.3	463	Tcc/Ccc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111517	8111518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001258-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	301	439	0	ENST00000346208.3:c.1004dupA	p.Asp335GlufsTer17	p.D335Efs*17	ENST00000346208		335	gac/gAac																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325747	30325749	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0001258-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	54	230	0	ENST00000322652.5:c.1950_1952del	p.Lys650del	p.K650del	ENST00000322652	NM_015355.2	649	AAG/-																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021785	71021785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs112795301		P-0006908-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			321	157	446	5	ENST00000318789.4:c.1573C>T	p.Arg525Ter	p.R525*	ENST00000318789	NM_032682.5	525	Cga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944553	71944553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006908-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			821	2574	737	0	ENST00000298229.2:c.2109C>G	p.Ile703Met	p.I703M	ENST00000298229	NM_001567.3	703	atC/atG																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223162	41223162	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006908-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			792	103	675	0	ENST00000357654.3:c.4769T>G	p.Val1590Gly	p.V1590G	ENST00000357654	NM_007294.3	1590	gTt/gGt																																																																														
TOP1	7150	MSKCC	GRCh37	20	39728742	39728742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006908-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			737	114	506	0	ENST00000361337.2:c.1022G>A	p.Cys341Tyr	p.C341Y	ENST00000361337	NM_003286.2	341	tGt/tAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012649-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	101	369	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602446	10602446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012649-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	321	581	0	ENST00000171111.5:c.1132G>T	p.Gly378Cys	p.G378C	ENST00000171111	NM_203500.1	378	Ggc/Tgc																																																																														
AKT2	208	MSKCC	GRCh37	19	40761161	40761161	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012649-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			557	134	458	0	ENST00000392038.2:c.191A>T	p.Lys64Met	p.K64M	ENST00000392038	NM_001626.4	64	aAg/aTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670816	134670816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012649-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	98	373	0	ENST00000398015.3:c.727G>T	p.Asp243Tyr	p.D243Y	ENST00000398015	NM_004441.4	243	Gat/Tat																																																																														
ATR	545	MSKCC	GRCh37	3	142241612	142241612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012649-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	90	440	0	ENST00000350721.4:c.4224del	p.Asp1409IlefsTer46	p.D1409Ifs*46	ENST00000350721	NM_001184.3	1408	gcT/gc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185186	123185186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012649-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	120	434	1	ENST00000218089.9:c.1138C>A	p.Leu380Ile	p.L380I	ENST00000218089	NM_001042749.1	380	Ctt/Att																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	1145	632	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	289	542	0	ENST00000346208.3:c.878T>G	p.Met293Arg	p.M293R	ENST00000346208		293	aTg/aGg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	537	918	0	ENST00000250448.2:c.676G>A	p.Asp226Asn	p.D226N	ENST00000250448	NM_004496.3	226	Gac/Aac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0013297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	312	725	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206892	36206892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	45	269	0	ENST00000300305.3:c.620G>A	p.Arg207Gln	p.R207Q	ENST00000300305		207	cGg/cAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965736	93965736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1312	339	743	1	ENST00000369303.4:c.2192C>T	p.Thr731Ile	p.T731I	ENST00000369303	NM_004440.3	731	aCa/aTa																																																																														
CBFB	865	MSKCC	GRCh37	16	67063718	67063719	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TA	TA	-			P-0013297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	74	275	0	ENST00000412916.2:c.165+2_165+3del		p.X55_splice	ENST00000412916		55																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014384-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	316	529	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0014384-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	238	676	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																														
CDH1	999	MSKCC	GRCh37	16	68844247	68844247	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0014384-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	324	500	0	ENST00000261769.5:c.832+3A>G		p.X278_splice	ENST00000261769	NM_004360.3	278																																																																															
TET2	54790	MSKCC	GRCh37	4	106162505	106162505	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014384-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	97	306	0	ENST00000380013.4:c.3419T>C	p.Ile1140Thr	p.I1140T	ENST00000380013	NM_001127208.2	1140	aTt/aCt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058476	69058476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014384-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	145	605	1	ENST00000288368.4:c.4120C>T	p.Arg1374Trp	p.R1374W	ENST00000288368	NM_024870.2	1374	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730868	40730868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014384-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	207	725	0	ENST00000373198.4:c.3667G>A	p.Asp1223Asn	p.D1223N	ENST00000373198	NM_133170.3	1223	Gat/Aat																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246113	41246113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014384-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	240	716	0	ENST00000357654.3:c.1435G>A	p.Glu479Lys	p.E479K	ENST00000357654	NM_007294.3	479	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	229	436	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0014543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	167	285	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	203	292	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983121	201983122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGACC			P-0014543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	451	643	0	ENST00000359651.3:c.972_976dup	p.Tyr326Ter	p.Y326*	ENST00000359651		324	atg/aTGACCtg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119816	70119817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGACATCGGC			P-0014543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	424	732	1	ENST00000245479.2:c.820_829dup	p.Glu277GlyfsTer22	p.E277Gfs*22	ENST00000245479	NM_000346.3	273	gtg/gtGGACATCGGCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	263	533	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0015354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	52	186	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112174502	112174502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	50	265	0	ENST00000257430.4:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000257430	NM_000038.5	1071	Caa/Taa																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885531	111885531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	99	402	0	ENST00000341259.2:c.1308C>A	p.Asp436Glu	p.D436E	ENST00000341259	NM_005475.2	436	gaC/gaA																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609744	81609744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201889708		P-0015354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	180	330	0	ENST00000298171.2:c.1342G>A	p.Val448Ile	p.V448I	ENST00000298171	NM_000369.2	448	Gtc/Atc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118876	70118876	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	202	353	0	ENST00000245479.2:c.448G>T	p.Glu150Ter	p.E150*	ENST00000245479	NM_000346.3	150	Gag/Tag																																																																														
ACVR1	90	MSKCC	GRCh37	2	158637064	158637064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	96	500	1	ENST00000263640.3:c.116G>A	p.Gly39Asp	p.G39D	ENST00000263640	NM_001105.4	39	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	364	497	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217909	2217909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	354	521	1	ENST00000398665.3:c.2683G>A	p.Glu895Lys	p.E895K	ENST00000398665	NM_032482.2	895	Gag/Aag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99192881	99192881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	174	268	0	ENST00000268035.6:c.71C>T	p.Ser24Leu	p.S24L	ENST00000268035	NM_000875.3	24	tCg/tTg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403538	138403538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	79	458	0	ENST00000289153.2:c.2244G>C	p.Gln748His	p.Q748H	ENST00000289153	NM_006219.2	748	caG/caC																																																																														
KDM5A	5927	MSKCC	GRCh37	12	420158	420158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	289	326	0	ENST00000399788.2:c.3109C>G	p.Leu1037Val	p.L1037V	ENST00000399788	NM_001042603.1	1037	Ctt/Gtt																																																																														
MDM2	4193	MSKCC	GRCh37	12	69230464	69230464	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	190	292	0	ENST00000462284.1:c.853A>C	p.Thr285Pro	p.T285P	ENST00000462284	NM_002392.5	285	Act/Cct																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001425	29001425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	151	215	0	ENST00000282397.4:c.1307C>T	p.Ser436Leu	p.S436L	ENST00000282397	NM_002019.4	436	tCa/tTa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082546	16082546	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	253	372	0	ENST00000281043.3:c.360C>G	p.Phe120Leu	p.F120L	ENST00000281043	NM_005378.4	120	ttC/ttG																																																																														
GNAS	2778	MSKCC	GRCh37	20	57480468	57480468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	198	280	2	ENST00000371085.3:c.463G>A	p.Glu155Lys	p.E155K	ENST00000371085	NM_000516.4	155	Gag/Aag																																																																														
PPARG	5468	MSKCC	GRCh37	3	12447410	12447410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	234	399	0	ENST00000287820.6:c.649G>A	p.Glu217Lys	p.E217K	ENST00000287820	NM_015869.4	217	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879643	151879643	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	111	147	0	ENST00000262189.6:c.5302G>T	p.Glu1768Ter	p.E1768*	ENST00000262189	NM_170606.2	1768	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	138	517	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	286	346	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	111	247	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
ARAF	369	MSKCC	GRCh37	X	47430385	47430385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	172	554	0	ENST00000377045.4:c.1660C>T	p.Arg554Trp	p.R554W	ENST00000377045	NM_001654.4	554	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101213	27101213	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	335	609	1	ENST00000324856.7:c.4495C>T	p.Gln1499Ter	p.Q1499*	ENST00000324856	NM_006015.4	1499	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653799	89653800	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0015507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	146	354	0	ENST00000371953.3:c.98_99dup	p.Ala34LeufsTer21	p.A34Lfs*21	ENST00000371953	NM_000314.4	33	att/aTTtt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36421086	36421192	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTACAGGCAAAGCTGAGCAAAAGTAGATATTACAAGACCAGCATGTACTCACCTCTCATGAAGCACTGTGGGTACGAAGGAAATGACTCAAATATGCTGTCTGAAG	ATTACAGGCAAAGCTGAGCAAAAGTAGATATTACAAGACCAGCATGTACTCACCTCTCATGAAGCACTGTGGGTACGAAGGAAATGACTCAAATATGCTGTCTGAAG	-			P-0015507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	38	136	0	ENST00000300305.3:c.5_58+53del		p.X2_splice	ENST00000300305		2																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	144	511	1	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10264991	10264991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	97	393	0	ENST00000340748.4:c.1949G>T	p.Arg650Leu	p.R650L	ENST00000340748		650	cGc/cTc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910674	29910674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	76	899	0	ENST00000376809.5:c.214C>G	p.Arg72Gly	p.R72G	ENST00000376809	NM_002116.7	72	Cgg/Ggg																																																																														
MYC	4609	MSKCC	GRCh37	8	128752651	128752653	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0015710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	60	230	0	ENST00000377970.2:c.816_818del	p.Glu272del	p.E272del	ENST00000377970	NM_002467.4	271	cAAGaa/caa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115261309	115261309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	69	442	0	ENST00000438362.2:c.2412G>T	p.Lys804Asn	p.K804N	ENST00000438362	NM_001242891.1	804	aaG/aaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578369	212578369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	36	268	1	ENST00000342788.4:c.888C>A	p.Asn296Lys	p.N296K	ENST00000342788	NM_005235.2	296	aaC/aaA																																																																														
BCL6	604	MSKCC	GRCh37	3	187451439	187451439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	56	348	0	ENST00000232014.4:c.43G>T	p.Ala15Ser	p.A15S	ENST00000232014	NM_001130845.1	15	Gcc/Tcc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674246	117674246	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	75	620	0	ENST00000368508.3:c.4228G>C	p.Ala1410Pro	p.A1410P	ENST00000368508	NM_002944.2	1410	Gca/Cca																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913248	39913248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	111	530	0	ENST00000378444.4:c.4867C>G	p.Pro1623Ala	p.P1623A	ENST00000378444	NM_001123385.1	1623	Cca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	117	493	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	240	845	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0015868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	55	467	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	59	228	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	45	362	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	311	761	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	318	819	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	180	710	0	ENST00000267101.3:c.310G>C	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ctg																																																																														
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	59	330	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664915	138664915	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	93	221	0	ENST00000330315.3:c.650C>G	p.Ser217Cys	p.S217C	ENST00000330315	NM_023067.3	217	tCc/tGc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912094	114912094	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0016200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	161	316	0	ENST00000543371.1:c.1164G>A	p.Trp388Ter	p.W388*	ENST00000543371	NM_001198531.1	388	tgG/tgA																																																																														
TSHR	7253	MSKCC	GRCh37	14	81534666	81534666	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	98	441	0	ENST00000298171.2:c.311C>G	p.Thr104Ser	p.T104S	ENST00000298171	NM_000369.2	104	aCt/aGt																																																																														
STK19	8859	MSKCC	GRCh37	6	31940458	31940458	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	78	580	0	ENST00000375331.2:c.491A>G	p.Asp164Gly	p.D164G	ENST00000375331	NM_004197.1	164	gAc/gGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	68	126	0				ENST00000310581	NM_198253.2																																																																																
PAK7	57144	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	90	375	0	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	105	286	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750440	41750440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	62	355	0	ENST00000226382.2:c.188G>A	p.Gly63Glu	p.G63E	ENST00000226382	NM_003924.3	63	gGa/gAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	117	291	0	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	92	294	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740665	58740665	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	120	760	0	ENST00000305921.3:c.1570C>T	p.Gln524Ter	p.Q524*	ENST00000305921	NM_003620.3	524	Caa/Taa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979257	93979257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	76	437	0	ENST00000369303.4:c.1571G>A	p.Gly524Glu	p.G524E	ENST00000369303	NM_004440.3	524	gGa/gAa																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228613019	228613019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	30	169	0	ENST00000366696.1:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000366696	NM_003493.2	3	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142176461	142176461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	118	353	0	ENST00000350721.4:c.7640G>A	p.Arg2547Gln	p.R2547Q	ENST00000350721	NM_001184.3	2547	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29560019	29560019	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	84	265	0	ENST00000358273.4:c.3497-1G>A		p.X1166_splice	ENST00000358273	NM_001042492.2	1166																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63530108	63530108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	256	637	1	ENST00000307078.5:c.2327C>T	p.Pro776Leu	p.P776L	ENST00000307078	NM_004655.3	776	cCa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857878	9857878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	139	413	0	ENST00000330684.3:c.3523G>A	p.Glu1175Lys	p.E1175K	ENST00000330684	NM_001134407.1	1175	Gaa/Aaa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933735	36933736	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	95	539	1	ENST00000361632.4:c.1663_1664delinsAA	p.Gly555Lys	p.G555K	ENST00000361632		555	GGg/AAg																																																																														
ATM	472	MSKCC	GRCh37	11	108165729	108165729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	123	432	1	ENST00000278616.4:c.4852C>T	p.Arg1618Ter	p.R1618*	ENST00000278616	NM_000051.3	1618	Cga/Tga																																																																														
CBL	867	MSKCC	GRCh37	11	119149289	119149289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	168	462	0	ENST00000264033.4:c.1297C>T	p.Pro433Ser	p.P433S	ENST00000264033	NM_005188.3	433	Ccg/Tcg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	427504	427504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	102	513	0	ENST00000399788.2:c.2665C>T	p.Pro889Ser	p.P889S	ENST00000399788	NM_001042603.1	889	Cct/Tct																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18716366	18716366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	113	435	0	ENST00000266497.5:c.3713C>T	p.Ser1238Leu	p.S1238L	ENST00000266497		1238	tCa/tTa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504584	103504584	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	108	319	0	ENST00000355739.4:c.205C>T	p.Arg69Ter	p.R69*	ENST00000355739	NM_000123.3	69	Cga/Tga																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2090049	2090049	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	180	651	0	ENST00000219066.1:c.816-1G>A		p.X272_splice	ENST00000219066	NM_002528.5	272																																																																															
CYLD	1540	MSKCC	GRCh37	16	50813768	50813768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	256	672	2	ENST00000398568.2:c.1322C>T	p.Ser441Phe	p.S441F	ENST00000398568	NM_001042412.1	441	tCt/tTt																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979035	7979035	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	162	422	0	ENST00000319144.4:c.1533-1G>A		p.X511_splice	ENST00000319144	NM_001139.2	511																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2210422	2210422	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	184	530	0	ENST00000398665.3:c.1030del	p.Arg344AlafsTer43	p.R344Afs*43	ENST00000398665	NM_032482.2	343	cgC/cg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141112	55141112	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	63	324	0	ENST00000257290.5:c.1758G>A	p.Trp586Ter	p.W586*	ENST00000257290	NM_006206.4	586	tgG/tgA																																																																														
MDC1	9656	MSKCC	GRCh37	6	30670909	30670909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	480	588	0	ENST00000376406.3:c.5837C>T	p.Pro1946Leu	p.P1946L	ENST00000376406	NM_014641.2	1946	cCc/cTc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323111	31323111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	51	510	1	ENST00000412585.2:c.878C>T	p.Pro293Leu	p.P293L	ENST00000412585	NM_005514.6	293	cCc/cTc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32813435	32813436	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1341	115	693	3	ENST00000354258.4:c.2347_2348delinsAA	p.Gly783Lys	p.G783K	ENST00000354258	NM_000593.5	783	GGg/AAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117630024	117630024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	64	490	0	ENST00000368508.3:c.6502C>T	p.Leu2168Phe	p.L2168F	ENST00000368508	NM_002944.2	2168	Ctt/Ttt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117746758	117746758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	87	542	1	ENST00000368508.3:c.62G>A	p.Trp21Ter	p.W21*	ENST00000368508	NM_002944.2	21	tGg/tAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976676	2976676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	114	348	0	ENST00000396946.4:c.1336G>A	p.Asp446Asn	p.D446N	ENST00000396946	NM_032415.4	446	Gac/Aac																																																																														
TEK	7010	MSKCC	GRCh37	9	27157949	27157949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	202	548	0	ENST00000380036.4:c.173G>A	p.Gly58Glu	p.G58E	ENST00000380036	NM_000459.3	58	gGa/gAa																																																																														
VHL	7428	MSKCC	GRCh37	3	10188219	10188219	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs5030832		P-0016523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	109	485	0	ENST00000256474.2:c.362A>G	p.Asp121Gly	p.D121G	ENST00000256474	NM_000551.3	121	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	44	413	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158140	47158140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	70	571	0	ENST00000409792.3:c.4559G>C	p.Cys1520Ser	p.C1520S	ENST00000409792	NM_014159.6	1520	tGt/tCt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610580	52610585	+	inframe_deletion	In_Frame_Del	DEL	GTTTCT	GTTTCT	-			P-0016523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	63	388	0	ENST00000394830.3:c.3588_3593del	p.Glu1196_Thr1198delinsAsp	p.E1196_T1198delinsD	ENST00000394830	NM_018313.4	1196	gaAGAAACc/gac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638724	176638725	+	missense_variant	Missense_Mutation	DNP	GC	GC	TA			P-0016523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	89	538	1	ENST00000439151.2:c.3324_3325delinsTA	p.His1109Asn	p.H1109N	ENST00000439151	NM_022455.4	1108	gtGCat/gtTAat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045006	47045006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	71	272	0	ENST00000329236.7:c.2098C>G	p.Gln700Glu	p.Q700E	ENST00000329236	NM_001204466.1	700	Cag/Gag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	257	345	0	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40459498	40459499	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0016530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	264	423	1	ENST00000345506.4:c.1759_1760delinsTT	p.Pro587Phe	p.P587F	ENST00000345506	NM_003152.3	587	CCc/TTc																																																																														
CALR	811	MSKCC	GRCh37	19	13050307	13050307	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	301	435	3	ENST00000316448.5:c.259A>T	p.Lys87Ter	p.K87*	ENST00000316448	NM_004343.3	87	Aaa/Taa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	155	291	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932644	49932644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	386	573	1	ENST00000296474.3:c.3227C>T	p.Pro1076Leu	p.P1076L	ENST00000296474	NM_002447.2	1076	cCc/cTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259646	89259646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	147	255	0	ENST00000336596.2:c.790G>A	p.Glu264Lys	p.E264K	ENST00000336596	NM_005233.5	264	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710585	117710585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	197	257	0	ENST00000368508.3:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000368508	NM_002944.2	563	Gag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106545622	106545622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	309	522	2	ENST00000359195.3:c.3099G>A	p.Met1033Ile	p.M1033I	ENST00000359195	NM_002649.2	1033	atG/atA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508284	106508284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	102	213	0	ENST00000359195.3:c.278C>T	p.Pro93Leu	p.P93L	ENST00000359195	NM_002649.2	93	cCg/cTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174437	11174437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	165	479	0	ENST00000361445.4:c.7238G>T	p.Ser2413Ile	p.S2413I	ENST00000361445	NM_004958.3	2413	aGt/aTt																																																																														
REL	5966	MSKCC	GRCh37	2	61147196	61147196	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	249	446	0	ENST00000295025.8:c.874A>G	p.Lys292Glu	p.K292E	ENST00000295025	NM_002908.2	292	Aag/Gag																																																																														
VHL	7428	MSKCC	GRCh37	3	10188227	10188227	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	212	454	0	ENST00000256474.2:c.370delA	p.Thr124HisfsTer35	p.T124Hfs*35	ENST00000256474	NM_000551.3	124	Aca/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	634	1296	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																														
VHL	7428	MSKCC	GRCh37	3	10183739	10183739	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs5030802		P-0016688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	335	825	2	ENST00000256474.2:c.208G>T	p.Glu70Ter	p.E70*	ENST00000256474	NM_000551.3	70	Gag/Tag																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926254	112926254	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	63	477	0	ENST00000351677.2:c.1387A>G	p.Ile463Val	p.I463V	ENST00000351677	NM_002834.3	463	Att/Gtt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623174	52623175	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0016688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	276	658	0	ENST00000394830.3:c.2876_2877del	p.His959ArgfsTer22	p.H959Rfs*22	ENST00000394830	NM_018313.4	959	cAT/c																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			101	54	595	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			117	67	699	0	ENST00000269305.4:c.776A>T	p.Asp259Val	p.D259V	ENST00000269305	NM_001126112.2	259	gAc/gTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118911	115118911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			55	12	382	0	ENST00000257566.3:c.430G>T	p.Asp144Tyr	p.D144Y	ENST00000257566	NM_016569.3	144	Gat/Tat																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58700884	58700884	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	17	447	0	ENST00000305921.3:c.475G>A	p.Glu159Lys	p.E159K	ENST00000305921	NM_003620.3	159	Gaa/Aaa																																																																														
BCL2	596	MSKCC	GRCh37	18	60985887	60985887	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	14	425	0	ENST00000333681.4:c.13G>C	p.Gly5Arg	p.G5R	ENST00000333681		5	Ggg/Cgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			62	18	239	0	ENST00000281708.4:c.1429G>T	p.Gly477Cys	p.G477C	ENST00000281708	NM_033632.3	477	Ggt/Tgt																																																																														
CIC	23152	MSKCC	GRCh37	19	42797005	42797005	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148703020		P-0016695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	23	955	0	ENST00000575354.2:c.3463G>A	p.Ala1155Thr	p.A1155T	ENST00000575354	NM_015125.3	1155	Gcc/Acc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4123778	4123778	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0016728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	49	294	0	ENST00000262948.5:c.92+3G>C		p.X31_splice	ENST00000262948	NM_030662.3	31																																																																															
MSH6	2956	MSKCC	GRCh37	2	48027644	48027644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	44	257	0	ENST00000234420.5:c.2522G>C	p.Arg841Thr	p.R841T	ENST00000234420	NM_000179.2	841	aGg/aCg																																																																														
VHL	7428	MSKCC	GRCh37	3	10191460	10191470	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGCCCTTCCAG	TGCCCTTCCAG	-			P-0016728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	52	203	0	ENST00000256474.2:c.464-9_465del		p.X155_splice	ENST00000256474	NM_000551.3	155																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439780	52439780	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	74	346	0	ENST00000460680.1:c.931+1G>T		p.X311_splice	ENST00000460680	NM_004656.3	311																																																																															
FLT4	2324	MSKCC	GRCh37	5	180056313	180056313	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	189	694	0	ENST00000261937.6:c.931A>C	p.Lys311Gln	p.K311Q	ENST00000261937	NM_182925.4	311	Aag/Cag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	153	502	0	ENST00000361445.4:c.7280T>A	p.Leu2427Gln	p.L2427Q	ENST00000361445	NM_004958.3	2427	cTg/cAg																																																																														
VHL	7428	MSKCC	GRCh37	3	10183734	10183734	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	171	600	0	ENST00000256474.2:c.203C>A	p.Ser68Ter	p.S68*	ENST00000256474	NM_000551.3	68	tCg/tAg																																																																														
ATM	472	MSKCC	GRCh37	11	108180952	108180952	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	46	311	0	ENST00000278616.4:c.5828A>T	p.Lys1943Met	p.K1943M	ENST00000278616	NM_000051.3	1943	aAg/aTg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959347	26959347	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	26	244	0	ENST00000381527.3:c.515-1G>A		p.X172_splice	ENST00000381527	NM_001260.1	172																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52620696	52620698	+	frameshift_variant	Frame_Shift_Del	DEL	AAA	AAA	TC			P-0016803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	40	252	1	ENST00000394830.3:c.3055_3057delinsGA	p.Phe1019GlufsTer115	p.F1019Efs*115	ENST00000394830	NM_018313.4	1019	TTT/GA																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2213640	2213640	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	121	584	0	ENST00000398665.3:c.1659+1G>A		p.X553_splice	ENST00000398665	NM_032482.2	553																																																																															
VHL	7428	MSKCC	GRCh37	3	10188249	10188250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	151	599	0	ENST00000256474.2:c.394dup	p.Gln132ProfsTer3	p.Q132Pfs*3	ENST00000256474	NM_000551.3	131	aac/aaCc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441226	52441226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	73	346	0	ENST00000460680.1:c.544G>A	p.Glu182Lys	p.E182K	ENST00000460680	NM_004656.3	182	Gag/Aag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584550	52584551	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0016897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	97	451	0	ENST00000394830.3:c.4462_4463del	p.Val1488SerfsTer20	p.V1488Sfs*20	ENST00000394830	NM_018313.4	1488	GTa/a																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103828	47103828	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	115	302	1	ENST00000409792.3:c.6118C>T	p.Arg2040Ter	p.R2040*	ENST00000409792	NM_014159.6	2040	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953945	32953945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	47	593	0	ENST00000380152.3:c.9012G>T	p.Lys3004Asn	p.K3004N	ENST00000380152		3004	aaG/aaT																																																																														
VHL	7428	MSKCC	GRCh37	3	10183863	10183881	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTACCGAGGTACGGGCCC	GCTACCGAGGTACGGGCCC	-			P-0016971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	160	544	0	ENST00000256474.2:c.333_340+11del		p.X111_splice	ENST00000256474	NM_000551.3	111																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577085	+	missense_variant	Missense_Mutation	ONP	CCTC	CCTC	TCTT			P-0017014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	465	924	1	ENST00000269305.4:c.853_856delinsAAGA	p.Glu285_Glu286delinsLysLys	p.E285_E286delinsKK	ENST00000269305	NM_001126112.2	285	GAGGaa/AAGAaa																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675064	40675064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	184	923	0	ENST00000249776.8:c.28G>A	p.Asp10Asn	p.D10N	ENST00000249776	NM_033286.3	10	Gac/Aac																																																																														
CIC	23152	MSKCC	GRCh37	19	42793057	42793057	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	225	764	0	ENST00000575354.2:c.949T>A	p.Ser317Thr	p.S317T	ENST00000575354	NM_015125.3	317	Tcc/Acc																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881703	111881703	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0017014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	166	714	0	ENST00000393256.3:c.381T>G	p.Tyr127Ter	p.Y127*	ENST00000393256	NM_006538.4	127	taT/taG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971140	21971140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	104	492	0	ENST00000304494.5:c.218C>T	p.Ala73Val	p.A73V	ENST00000304494	NM_000077.4	73	gCc/gTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971140	21971140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	104	492	0	ENST00000304494.5:c.218C>T	p.Ala73Val	p.A73V	ENST00000304494	NM_000077.4	73	gCc/gTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	10	457	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148508728	148508728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	19	402	0	ENST00000320356.2:c.1936T>C	p.Tyr646His	p.Y646H	ENST00000320356	NM_004456.4	646	Tac/Cac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71949218	71949218	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0017059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	155	621	2	ENST00000298229.2:c.3685A>G	p.Ser1229Gly	p.S1229G	ENST00000298229	NM_001567.3	1229	Agt/Ggt																																																																														
VHL	7428	MSKCC	GRCh37	3	10188296	10188297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0017059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	197	573	0	ENST00000256474.2:c.443_444dup	p.Ala149LeufsTer11	p.A149Lfs*11	ENST00000256474	NM_000551.3	147	att/aTTtt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651275	52651278	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACC	TACC	-			P-0017059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	130	371	0	ENST00000394830.3:c.1818_1818+3del		p.X606_splice	ENST00000394830	NM_018313.4	606																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412449	63412449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	42	288	0	ENST00000330258.3:c.718T>C	p.Ser240Pro	p.S240P	ENST00000330258	NM_152424.3	240	Tct/Cct																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654627	67654627	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	107	370	0	ENST00000264010.4:c.1114T>C	p.Ser372Pro	p.S372P	ENST00000264010	NM_006565.3	372	Tct/Cct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162012	47162012	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	90	235	0	ENST00000409792.3:c.4114del	p.Ile1372Ter	p.I1372*	ENST00000409792	NM_014159.6	1372	Ata/ta																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620685	52620703	+	stop_gained,protein_altering_variant,splice_region_variant	Nonsense_Mutation	DEL	GGGCATAACTTAAAGTATT	GGGCATAACTTAAAGTATT	TATG			P-0017101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	68	237	2	ENST00000394830.3:c.3050_3068delinsCATA	p.Glu1017_Pro1023delinsAlaTer	p.E1017_P1023delinsA*	ENST00000394830	NM_018313.4	1017	gAATACTTTAAGTTATGCCCa/gCATAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157957	106157960	+	frameshift_variant	Frame_Shift_Del	DEL	GGTG	GGTG	AGT			P-0017101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	148	333	2	ENST00000380013.4:c.2858_2861delinsAGT	p.Arg953LysfsTer54	p.R953Kfs*54	ENST00000380013	NM_001127208.2	953	aGGTGg/aAGTg																																																																														
VHL	7428	MSKCC	GRCh37	3	10191513	10191513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	68	588	0	ENST00000256474.2:c.506T>C	p.Leu169Pro	p.L169P	ENST00000256474	NM_000551.3	169	cTa/cCa																																																																														
SDHD	6392	MSKCC	GRCh37	11	111959683	111959683	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	38	383	0	ENST00000375549.3:c.262T>A	p.Cys88Ser	p.C88S	ENST00000375549	NM_003002.3	88	Tgc/Agc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245003	46245003	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	172	783	1	ENST00000334344.6:c.3100del	p.Gln1034AsnfsTer26	p.Q1034Nfs*26	ENST00000334344	NM_152641.2	1033	Ccc/cc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726668	88726668	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	49	599	0	ENST00000360948.2:c.376A>G	p.Asn126Asp	p.N126D	ENST00000360948	NM_001012338.2	126	Aac/Gac																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597477	52597477	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	39	643	0	ENST00000394830.3:c.3833del	p.Pro1278LeufsTer10	p.P1278Lfs*10	ENST00000394830	NM_018313.4	1278	cCt/ct																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524543	176524543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	218	1109	4	ENST00000292408.4:c.2275C>A	p.Leu759Met	p.L759M	ENST00000292408	NM_213647.1	759	Ctg/Atg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289076	33289076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	79	672	2	ENST00000374542.5:c.476A>G	p.Asn159Ser	p.N159S	ENST00000374542	NM_001141970.1	159	aAc/aGc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247529	53247529	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	104	466	1	ENST00000375401.3:c.280G>T	p.Glu94Ter	p.E94*	ENST00000375401	NM_004187.3	94	Gaa/Taa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865239	57865239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	77	926	0	ENST00000228682.2:c.2716C>A	p.Gln906Lys	p.Q906K	ENST00000228682	NM_005269.2	906	Cag/Aag																																																																														
VHL	7428	MSKCC	GRCh37	3	10183752	10183752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	75	905	1	ENST00000256474.2:c.221T>C	p.Val74Ala	p.V74A	ENST00000256474	NM_000551.3	74	gTc/gCc																																																																														
VHL	7428	MSKCC	GRCh37	3	10183848	10183849	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGCCT			P-0017192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	97	832	0	ENST00000256474.2:c.322_323insTCCGCC	p.Arg107_Arg108insLeuArg	p.R107_R108insLR	ENST00000256474	NM_000551.3	106	ggc/ggCCGCCTc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441989	52442010	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGGTGAAGTCCTTCATGCGA	CTTGGTGAAGTCCTTCATGCGA	-			P-0017192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	31	553	0	ENST00000460680.1:c.339_360del	p.Ser113ArgfsTer67	p.S113Rfs*67	ENST00000460680	NM_004656.3	113	agTCGCATGAAGGACTTCACCAAG/ag																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752836	57752868	+	inframe_deletion	In_Frame_Del	DEL	AAAGAAATTCTTAGCTGGGCTTGATAAGTGGAA	AAAGAAATTCTTAGCTGGGCTTGATAAGTGGAA	-			P-0017192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	65	566	0	ENST00000274289.3:c.1060_1092del	p.Phe354_Phe364del	p.F354_F364del	ENST00000274289	NM_006622.3	354	TTCCACTTATCAAGCCCAGCTAAGAATTTCTTT/-																																																																														
ROS1	6098	MSKCC	GRCh37	6	117709068	117709068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	67	803	0	ENST00000368508.3:c.1889G>A	p.Ser630Asn	p.S630N	ENST00000368508	NM_002944.2	630	aGt/aAt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188078	11188078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	155	316	0	ENST00000361445.4:c.6016G>T	p.Val2006Phe	p.V2006F	ENST00000361445	NM_004958.3	2006	Gtc/Ttc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14031715	14031715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	88	366	1	ENST00000311895.7:c.1904G>A	p.Arg635Lys	p.R635K	ENST00000311895	NM_005236.2	635	aGg/aAg																																																																														
VHL	7428	MSKCC	GRCh37	3	10188287	10188287	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	162	750	2	ENST00000256474.2:c.430G>T	p.Gly144Ter	p.G144*	ENST00000256474	NM_000551.3	144	Gga/Tga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52649376	52649377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	116	607	0	ENST00000394830.3:c.1914dup	p.Leu639ThrfsTer5	p.L639Tfs*5	ENST00000394830	NM_018313.4	638	-/A																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057607	180057607	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	352	801	0	ENST00000261937.6:c.348C>G	p.Ile116Met	p.I116M	ENST00000261937	NM_182925.4	116	atC/atG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	186	536	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	344	433	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741870	17741870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	60	291	0	ENST00000250003.3:c.541C>A	p.Pro181Thr	p.P181T	ENST00000250003	NM_002478.4	181	Ccg/Acg																																																																														
YES1	7525	MSKCC	GRCh37	18	724433	724433	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	136	620	0	ENST00000314574.4:c.1623A>C	p.Glu541Asp	p.E541D	ENST00000314574	NM_005433.3	541	gaA/gaC																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101135	41101135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	225	435	0	ENST00000373198.4:c.1221G>T	p.Trp407Cys	p.W407C	ENST00000373198	NM_133170.3	407	tgG/tgT																																																																														
MET	4233	MSKCC	GRCh37	7	116380101	116380101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	156	555	0	ENST00000397752.3:c.1490A>T	p.Asn497Ile	p.N497I	ENST00000397752	NM_000245.2	497	aAc/aTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	375	576	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	167	420	0				ENST00000310581	NM_198253.2																																																																																
DNMT3B	1789	MSKCC	GRCh37	20	31394065	31394066	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	199	462	0	ENST00000328111.2:c.2357dup	p.Asn786LysfsTer19	p.N786Kfs*19	ENST00000328111	NM_006892.3	784	-/A																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498403	89498403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	94	184	0	ENST00000336596.2:c.2375C>T	p.Ser792Leu	p.S792L	ENST00000336596	NM_005233.5	792	tCa/tTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55955874	55955874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	205	578	0	ENST00000263923.4:c.3288G>A	p.Trp1096Ter	p.W1096*	ENST00000263923	NM_002253.2	1096	tgG/tgA																																																																														
NPM1	4869	MSKCC	GRCh37	5	170818768	170818768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	169	332	0	ENST00000296930.5:c.317C>T	p.Ser106Leu	p.S106L	ENST00000296930	NM_002520.6	106	tCa/tTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76920137	76920137	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	207	528	0	ENST00000373344.5:c.3940G>T	p.Glu1314Ter	p.E1314*	ENST00000373344	NM_000489.3	1314	Gag/Tag																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2213944	2213944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	159	521	0	ENST00000326181.6:c.23G>A	p.Arg8His	p.R8H	ENST00000326181	NM_032271.2	8	cGc/cAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0017384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	69	347	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
TET2	54790	MSKCC	GRCh37	4	106156631	106156631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	25	353	0	ENST00000380013.4:c.1532A>G	p.His511Arg	p.H511R	ENST00000380013	NM_001127208.2	511	cAc/cGc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637443	176637443	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	45	358	0	ENST00000439151.2:c.2043T>G	p.Asn681Lys	p.N681K	ENST00000439151	NM_022455.4	681	aaT/aaG																																																																														
VHL	7428	MSKCC	GRCh37	3	10188309	10188309	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	90	523	1	ENST00000256474.2:c.452T>A	p.Ile151Asn	p.I151N	ENST00000256474	NM_000551.3	151	aTc/aAc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480557	50480557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	143	547	0	ENST00000394963.4:c.427G>A	p.Glu143Lys	p.E143K	ENST00000394963	NM_003076.4	143	Gaa/Aaa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225379441	225379441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	100	737	0	ENST00000264414.4:c.427G>A	p.Gly143Arg	p.G143R	ENST00000264414	NM_003590.4	143	Gga/Aga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439162	52439162	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	101	617	0	ENST00000460680.1:c.1080del	p.Leu361Ter	p.L361*	ENST00000460680	NM_004656.3	360	ttT/tt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164058	47164058	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0017473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	100	296	0	ENST00000409792.3:c.2068A>T	p.Lys690Ter	p.K690*	ENST00000409792	NM_014159.6	690	Aaa/Taa																																																																														
VHL	7428	MSKCC	GRCh37	3	10188296	10188297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	206	413	0	ENST00000256474.2:c.444dup	p.Ala149CysfsTer25	p.A149Cfs*25	ENST00000256474	NM_000551.3	147	att/aTtt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52676017	52676018	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	92	444	0	ENST00000394830.3:c.1039dup	p.Met347AsnfsTer10	p.M347Nfs*10	ENST00000394830	NM_018313.4	347	atg/aAtg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720843	89720843	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	44	325	0	ENST00000371953.3:c.996del	p.Ala333ProfsTer11	p.A333Pfs*11	ENST00000371953	NM_000314.4	332	Aaa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720806	89720807	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0017474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	31	215	0	ENST00000371953.3:c.958_959del	p.Leu320AsnfsTer4	p.L320Nfs*4	ENST00000371953	NM_000314.4	319	acTTta/acta																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425091	49425091	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	116	551	0	ENST00000301067.7:c.13397T>C	p.Leu4466Pro	p.L4466P	ENST00000301067	NM_003482.3	4466	cTa/cCa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431978	121431978	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	106	457	0	ENST00000257555.6:c.725T>C	p.Ile242Thr	p.I242T	ENST00000257555		242	aTc/aCc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785518	50785518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	79	385	0	ENST00000398568.2:c.508G>A	p.Glu170Lys	p.E170K	ENST00000398568	NM_001042412.1	170	Gaa/Aaa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463541	25463541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	21	460	0	ENST00000264709.3:c.2141C>A	p.Ser714Tyr	p.S714Y	ENST00000264709	NM_175629.2	714	tCc/tAc																																																																														
VHL	7428	MSKCC	GRCh37	3	10191469	10191469	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs5030816		P-0017474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	68	319	0	ENST00000256474.2:c.464-2A>G		p.X155_splice	ENST00000256474	NM_000551.3	155																																																																															
SETD2	29072	MSKCC	GRCh37	3	47142991	47142991	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	86	655	0	ENST00000409792.3:c.4972del	p.Ser1658GlnfsTer5	p.S1658Qfs*5	ENST00000409792	NM_014159.6	1658	Tca/ca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	268	300	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577098	7577098	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	381	536	0	ENST00000269305.4:c.840A>T	p.Arg280Ser	p.R280S	ENST00000269305	NM_001126112.2	280	agA/agT																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797221	135797222	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0017499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	165	235	0	ENST00000298552.3:c.647_648del	p.Phe216Ter	p.F216*	ENST00000298552	NM_001162426.1	216	tTT/t																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057894	27057894	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	351	511	0	ENST00000324856.7:c.1602C>A	p.Tyr534Ter	p.Y534*	ENST00000324856	NM_006015.4	534	taC/taA																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121574	2121574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	280	503	0	ENST00000219476.3:c.1903G>T	p.Asp635Tyr	p.D635Y	ENST00000219476	NM_000548.3	635	Gat/Tat																																																																														
CASP8	841	MSKCC	GRCh37	2	202137357	202137373	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAGAACCTGCTGGATA	TTAGAACCTGCTGGATA	-			P-0017499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	290	260	0	ENST00000358485.4:c.589-2_603del		p.X197_splice	ENST00000358485	NM_001080125.1	197																																																																															
PREX2	80243	MSKCC	GRCh37	8	69069652	69069652	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1520	81	509	0	ENST00000288368.4:c.4327del	p.Gln1443SerfsTer27	p.Q1443Sfs*27	ENST00000288368	NM_024870.2	1443	Cag/ag																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87338531	87338578	+	inframe_deletion	In_Frame_Del	DEL	GGAAGGAAAGTCTATCACATTATCCTGTAGTGTGGCAGGTGATCCGGT	GGAAGGAAAGTCTATCACATTATCCTGTAGTGTGGCAGGTGATCCGGT	-			P-0017499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	38	375	0	ENST00000277120.3:c.627_674del	p.Glu209_Val225delinsAsp	p.E209_V225delinsD	ENST00000277120		209	gaGGAAGGAAAGTCTATCACATTATCCTGTAGTGTGGCAGGTGATCCGGTt/gat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	753	499	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	38	312	2				ENST00000310581	NM_198253.2																																																																																
GRIN2A	2903	MSKCC	GRCh37	16	9857500	9857500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	34	312	0	ENST00000330684.3:c.3901G>A	p.Glu1301Lys	p.E1301K	ENST00000330684	NM_001134407.1	1301	Gag/Aag																																																																														
WT1	7490	MSKCC	GRCh37	11	32456315	32456315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	66	732	0	ENST00000332351.3:c.577G>A	p.Ala193Thr	p.A193T	ENST00000332351	NM_024426.4	193	Gcc/Acc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729115	66729115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	128	570	2	ENST00000307102.5:c.323G>T	p.Arg108Leu	p.R108L	ENST00000307102	NM_002755.3	108	cGg/cTg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156830881	156830881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	62	499	2	ENST00000524377.1:c.155G>T	p.Arg52Leu	p.R52L	ENST00000524377	NM_002529.3	52	cGg/cTg																																																																														
HRAS	3265	MSKCC	GRCh37	11	533945	533945	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	71	292	1	ENST00000311189.7:c.112-1G>T		p.X38_splice	ENST00000311189		38																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12870793	12870793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	129	124	0	ENST00000228872.4:c.20C>T	p.Ser7Phe	p.S7F	ENST00000228872	NM_004064.3	7	tCt/tTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438035	49438035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	183	492	0	ENST00000301067.7:c.5136G>T	p.Lys1712Asn	p.K1712N	ENST00000301067	NM_003482.3	1712	aaG/aaT																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675109	40675109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	225	701	0	ENST00000249776.8:c.73C>A	p.His25Asn	p.H25N	ENST00000249776	NM_033286.3	25	Cac/Aac																																																																														
BLM	641	MSKCC	GRCh37	15	91295137	91295137	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	512	489	0	ENST00000355112.3:c.920A>C	p.Glu307Ala	p.E307A	ENST00000355112	NM_000057.2	307	gAa/gCa																																																																														
CBFB	865	MSKCC	GRCh37	16	67100636	67100636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	141	452	0	ENST00000412916.2:c.334G>A	p.Gly112Ser	p.G112S	ENST00000412916		112	Ggc/Agc																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428315	33428315	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	74	392	0	ENST00000335858.7:c.472T>A	p.Phe158Ile	p.F158I	ENST00000335858	NM_133629.2	158	Ttt/Att																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752332	55752332	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	177	559	0	ENST00000284073.2:c.791-1G>T		p.X264_splice	ENST00000284073	NM_138962.2	264																																																																															
CCNE1	898	MSKCC	GRCh37	19	30313251	30313251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	114	407	0	ENST00000262643.3:c.945G>T	p.Lys315Asn	p.K315N	ENST00000262643	NM_001238.2	315	aaG/aaT																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469139	25469139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	180	506	1	ENST00000264709.3:c.1319G>T	p.Trp440Leu	p.W440L	ENST00000264709	NM_175629.2	440	tGg/tTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162048	47162049	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	83	322	0	ENST00000409792.3:c.4077_4078delinsTT	p.Leu1360Phe	p.L1360F	ENST00000409792	NM_014159.6	1359	tcCCtt/tcTTtt																																																																														
KDR	3791	MSKCC	GRCh37	4	55948770	55948770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	64	560	0	ENST00000263923.4:c.3695G>A	p.Arg1232Gln	p.R1232Q	ENST00000263923	NM_002253.2	1232	cGg/cAg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637707	176637707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	237	660	2	ENST00000439151.2:c.2307G>T	p.Lys769Asn	p.K769N	ENST00000439151	NM_022455.4	769	aaG/aaT																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536160	106536160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	87	266	0	ENST00000369096.4:c.127G>A	p.Asp43Asn	p.D43N	ENST00000369096	NM_001198.3	43	Gat/Aat																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026416	6026417	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	216	329	1	ENST00000265849.7:c.1979_1980delinsTT	p.Ala660Val	p.A660V	ENST00000265849	NM_000535.5	660	gCC/gTT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509118	106509119	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	180	462	3	ENST00000359195.3:c.1112_1113delinsTT	p.Pro371Leu	p.P371L	ENST00000359195	NM_002649.2	371	cCC/cTT																																																																														
BTK	695	MSKCC	GRCh37	X	100617167	100617167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	130	229	0	ENST00000308731.7:c.582G>T	p.Glu194Asp	p.E194D	ENST00000308731	NM_000061.2	194	gaG/gaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	163	340	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2489863	2489863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	134	449	1	ENST00000355716.4:c.260T>C	p.Leu87Pro	p.L87P	ENST00000355716	NM_003820.2	87	cTc/cCc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402219	402242	+	inframe_deletion	In_Frame_Del	DEL	GGACTTCTGTTTTCCTTCTCCAAA	GGACTTCTGTTTTCCTTCTCCAAA	-			P-0017563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1463	514	543	2	ENST00000399788.2:c.4549_4572del	p.Phe1517_Ser1524del	p.F1517_S1524del	ENST00000399788	NM_001042603.1	1517	TTTGGAGAAGGAAAACAGAAGTCC/-																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569828	95569828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	125	379	0	ENST00000343455.3:c.3905C>T	p.Thr1302Ile	p.T1302I	ENST00000343455	NM_177438.2	1302	aCt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578232	7578232	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	972	566	0	ENST00000269305.4:c.617delT	p.Leu206TrpfsTer41	p.L206Wfs*41	ENST00000269305	NM_001126112.2	206	tTg/tg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	19	363	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295138	15295138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	19	683	3	ENST00000263388.2:c.2534C>T	p.Ser845Phe	p.S845F	ENST00000263388	NM_000435.2	845	tCc/tTc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94194143	94194143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017666-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			167	168	582	0	ENST00000323929.3:c.1285G>T	p.Val429Leu	p.V429L	ENST00000323929	NM_005591.3	429	Gta/Tta																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	93	559	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577084	7577084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	312	930	2	ENST00000269305.4:c.854A>T	p.Glu285Val	p.E285V	ENST00000269305	NM_001126112.2	285	gAg/gTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120181	70120182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0017894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	305	660	0	ENST00000245479.2:c.1185_1186dup	p.His396ArgfsTer8	p.H396Rfs*8	ENST00000245479	NM_000346.3	395	acg/aCGcg																																																																														
IRF4	3662	MSKCC	GRCh37	6	393189	393189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	33	383	0	ENST00000380956.4:c.37G>A	p.Gly13Ser	p.G13S	ENST00000380956	NM_001195286.1	13	Ggc/Agc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932068	39932068	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140780988		P-0017894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	111	819	1	ENST00000378444.4:c.2531C>T	p.Pro844Leu	p.P844L	ENST00000378444	NM_001123385.1	844	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	600	737	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	186	760	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971021	21971021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	365	300	0	ENST00000361570.3:c.503C>T	p.Ser168Phe	p.S168F	ENST00000361570	NM_058195.3	168	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971021	21971021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	365	300	0	ENST00000361570.3:c.503C>T	p.Ser168Phe	p.S168F	ENST00000361570	NM_058195.3	168	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971100	21971100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	292	234	0	ENST00000361570.3:c.424C>T	p.Pro142Ser	p.P142S	ENST00000361570	NM_058195.3	142	Ccg/Tcg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	49	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579575	7579575	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	93	483	0	ENST00000269305.4:c.112delC	p.Gln38LysfsTer6	p.Q38Kfs*6	ENST00000269305	NM_001126112.2	38	Caa/aa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15273337	15273337	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	218	731	0	ENST00000263388.2:c.5852A>C	p.Asn1951Thr	p.N1951T	ENST00000263388	NM_000435.2	1951	aAc/aCc																																																																														
VHL	7428	MSKCC	GRCh37	3	10183784	10183785	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCCT			P-0017931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	259	606	0	ENST00000256474.2:c.258_259insTTGCCC	p.Leu85_Pro86dup	p.L85_P86dup	ENST00000256474	NM_000551.3	85	ctg/cTGCCCTtg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52613127	52613138	+	inframe_deletion	In_Frame_Del	DEL	TTCAGCCACATG	TTCAGCCACATG	-			P-0017931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	178	506	0	ENST00000394830.3:c.3390_3401delCATGTGGCTGAA	p.Asp1130_Lys1134delinsGlu	p.D1130_K1134delinsE	ENST00000394830	NM_018313.4	1130	gaCATGTGGCTGAAg/gag																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797690	32797707	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAATTTGTAGAAGATACC	CAATTTGTAGAAGATACC	-			P-0017931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	129	528	0	ENST00000374899.4:c.1795_1795+17delGGTATCTTCTACAAATTG		p.X599_splice	ENST00000374899	NM_018833.2	599																																																																															
MAP3K13	9175	MSKCC	GRCh37	3	185169115	185169115	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	166	857	0	ENST00000265026.3:c.1210C>G	p.Leu404Val	p.L404V	ENST00000265026	NM_004721.4	404	Ctc/Gtc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217150	66217150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	137	759	0	ENST00000273854.3:c.2465C>T	p.Ser822Phe	p.S822F	ENST00000273854	NM_004439.5	822	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	29451888	29451888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	112	870	4	ENST00000389048.3:c.2677G>A	p.Gly893Arg	p.G893R	ENST00000389048	NM_004304.4	893	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0018208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	233	926	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36224726	36224726	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	266	963	0	ENST00000222270.7:c.7112A>G	p.Asp2371Gly	p.D2371G	ENST00000222270	NM_014727.1	2371	gAt/gGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952064	178952064	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	85	623	1	ENST00000263967.3:c.3119T>A	p.Met1040Lys	p.M1040K	ENST00000263967	NM_006218.2	1040	aTg/aAg																																																																														
APC	324	MSKCC	GRCh37	5	112174170	112174170	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	96	582	0	ENST00000257430.4:c.2879C>G	p.Ser960Ter	p.S960*	ENST00000257430	NM_000038.5	960	tCa/tGa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004222	150004234	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTCATTCTCTA	ATTTCATTCTCTA	-			P-0018208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	44	549	0	ENST00000253339.5:c.1991_2003delTAGAGAATGAAAT	p.Leu664Ter	p.L664*	ENST00000253339		664	tTAGAGAATGAAATg/tg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106300	27106300	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	208	777	0	ENST00000324856.7:c.5911C>G	p.Leu1971Val	p.L1971V	ENST00000324856	NM_006015.4	1971	Ctg/Gtg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107195	27107195	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	186	621	0	ENST00000324856.7:c.6806C>G	p.Ser2269Ter	p.S2269*	ENST00000324856	NM_006015.4	2269	tCa/tGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099447	27099447	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	157	595	0	ENST00000324856.7:c.3686delA	p.Asn1229IlefsTer8	p.N1229Ifs*8	ENST00000324856	NM_006015.4	1228	ccA/cc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713457	30713457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	197	647	0	ENST00000359013.4:c.857C>T	p.Ala286Val	p.A286V	ENST00000359013	NM_001024847.2	286	gCc/gTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164697	47164697	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	114	466	0	ENST00000409792.3:c.1429T>C	p.Ser477Pro	p.S477P	ENST00000409792	NM_014159.6	477	Tcc/Ccc																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250829	26250829	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	59	239	0	ENST00000446824.2:c.5C>G	p.Ala2Gly	p.A2G	ENST00000446824	NM_021018.2	2	gCa/gGa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469924	157469925	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	156	659	0	ENST00000346085.5:c.2719dupA	p.Arg907LysfsTer35	p.R907Kfs*35	ENST00000346085	NM_020732.3	906	-/A																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591144	67591154	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ATACTTGATGT	ATACTTGATGT	C			P-0018211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	226	508	0	ENST00000274335.5:c.1737_1745+2delATACTTGATGTinsC		p.X579_splice	ENST00000274335		579																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	346	770	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	221	786	1	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
BIRC3	330	MSKCC	GRCh37	11	102196281	102196281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	25	316	0	ENST00000263464.3:c.938C>T	p.Ala313Val	p.A313V	ENST00000263464	NM_001165.4	313	gCc/gTc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554003	63554013	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGCGAAAGT	TTGGCGAAAGT	-			P-0018249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	240	567	0	ENST00000307078.5:c.726_736delACTTTCGCCAA	p.Lys242AsnfsTer23	p.K242Nfs*23	ENST00000307078	NM_004655.3	242	aaACTTTCGCCAAcc/aacc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919203	178919203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	60	430	0	ENST00000263967.3:c.688C>G	p.Arg230Gly	p.R230G	ENST00000263967	NM_006218.2	230	Cga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	42	857	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641063	117641063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	18	742	0	ENST00000368508.3:c.5908G>A	p.Val1970Ile	p.V1970I	ENST00000368508	NM_002944.2	1970	Gtt/Att																																																																														
KDR	3791	MSKCC	GRCh37	4	55956205	55956205	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148668147		P-0018390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	31	759	1	ENST00000263923.4:c.3110C>T	p.Ser1037Leu	p.S1037L	ENST00000263923	NM_002253.2	1037	tCg/tTg																																																																														
APC	324	MSKCC	GRCh37	5	112175673	112175673	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	133	575	0	ENST00000257430.4:c.4385delA	p.Lys1462ArgfsTer11	p.K1462Rfs*11	ENST00000257430	NM_000038.5	1461	gAa/ga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778168	3778168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	141	794	2	ENST00000262367.5:c.6880C>T	p.Arg2294Trp	p.R2294W	ENST00000262367	NM_004380.2	2294	Cgg/Tgg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644832	67644832	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	122	642	0	ENST00000264010.4:c.97C>T	p.Gln33Ter	p.Q33*	ENST00000264010	NM_006565.3	33	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	157	962	0	ENST00000269305.4:c.613T>A	p.Tyr205Asn	p.Y205N	ENST00000269305	NM_001126112.2	205	Tat/Aat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630549	187630549	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	39	980	0	ENST00000441802.2:c.433T>G	p.Leu145Val	p.L145V	ENST00000441802	NM_005245.3	145	Ttg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	194	636	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0018526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	39	400	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TET1	80312	MSKCC	GRCh37	10	70405452	70405452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	52	894	1	ENST00000373644.4:c.2966C>T	p.Ala989Val	p.A989V	ENST00000373644	NM_030625.2	989	gCa/gTa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376326	118376326	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	44	659	1	ENST00000534358.1:c.9719C>G	p.Ser3240Cys	p.S3240C	ENST00000534358	NM_005933.3	3240	tCt/tGt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28882996	28882996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	129	624	1	ENST00000282397.4:c.3704C>T	p.Ala1235Val	p.A1235V	ENST00000282397	NM_002019.4	1235	gCc/gTc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2100398	2100398	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0018526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	97	450	0	ENST00000219476.3:c.139-3C>T		p.X47_splice	ENST00000219476	NM_000548.3	47																																																																															
MAP2K4	6416	MSKCC	GRCh37	17	12016596	12016596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	19	324	0	ENST00000353533.5:c.732G>C	p.Lys244Asn	p.K244N	ENST00000353533	NM_003010.3	244	aaG/aaC																																																																														
ERF	2077	MSKCC	GRCh37	19	42752949	42752949	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	35	715	0	ENST00000222329.4:c.1315G>T	p.Glu439Ter	p.E439*	ENST00000222329	NM_006494.2	439	Gag/Tag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177491	56177491	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	18	352	0	ENST00000399503.3:c.2464A>T	p.Ser822Cys	p.S822C	ENST00000399503	NM_005921.1	822	Agt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	214	658	1	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	15	454	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375168	31375168	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147591633		P-0018613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	14	564	1	ENST00000328111.2:c.565G>A	p.Ala189Thr	p.A189T	ENST00000328111	NM_006892.3	189	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112174574	112174574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	10	382	0	ENST00000257430.4:c.3283C>T	p.Gln1095Ter	p.Q1095*	ENST00000257430	NM_000038.5	1095	Cag/Tag																																																																														
JUN	3725	MSKCC	GRCh37	1	59247997	59247998	+	stop_gained	Nonsense_Mutation	INS	-	-	ACT			P-0018613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	23	331	1	ENST00000371222.2:c.743_745dup	p.Glu248_Ser249insTer	p.E248_S249ins*	ENST00000371222	NM_002228.3	249	tcc/tAGTcc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99459946	99459946	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs200059469		P-0018687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	79	386	0	ENST00000268035.6:c.2042A>G	p.Glu681Gly	p.E681G	ENST00000268035	NM_000875.3	681	gAg/gGg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81887548	81888083	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGCCTTCATTTCCTCTTCCCCCTTTAATTGAGCCACAGAGCATTTGTAGCTTTTGGGACTCAAGGGAAAAGGTCATCAAGGTCAAGGTCAACCGGACAGTTGACCTTTAGGCTGCCTAGAGTGATCTCTAGTGAGCATCAATTTGGTCTCTTGTTTTTTTTTGGTAGAATAGTCTGTGCTTATTTCCTGAAATCTCAGTTGCATTACAAAAATTAATTGTCCTAGTTTAAAATGTGTCTGTCTGAGAAACAGGGTGAGCGGAAACCCCAAACTCTTCAGACTCCAGGGGTTTGTGGGGTGGCAGCAAATGCCCGGGTAGGGTCTTAGCCCTTTGTCCATTTCCAGAAGGAGGGGACACTGAGTCCAGACGCAGAGATAGCTTTGCGGGATCCTGTTGGGGAAGGAAGGAGCCAGGCTGTGCCTGGGCTGCAGTTGTGTGGCTGCATCCTCAGGTGGAGGGAACTCCAGCTTCTAATTGGCTCATGTTAATTTCATTTTAGTGGATATCATGGAAATAAAAGAAATCCGCCCAGGG	GTGCCTTCATTTCCTCTTCCCCCTTTAATTGAGCCACAGAGCATTTGTAGCTTTTGGGACTCAAGGGAAAAGGTCATCAAGGTCAAGGTCAACCGGACAGTTGACCTTTAGGCTGCCTAGAGTGATCTCTAGTGAGCATCAATTTGGTCTCTTGTTTTTTTTTGGTAGAATAGTCTGTGCTTATTTCCTGAAATCTCAGTTGCATTACAAAAATTAATTGTCCTAGTTTAAAATGTGTCTGTCTGAGAAACAGGGTGAGCGGAAACCCCAAACTCTTCAGACTCCAGGGGTTTGTGGGGTGGCAGCAAATGCCCGGGTAGGGTCTTAGCCCTTTGTCCATTTCCAGAAGGAGGGGACACTGAGTCCAGACGCAGAGATAGCTTTGCGGGATCCTGTTGGGGAAGGAAGGAGCCAGGCTGTGCCTGGGCTGCAGTTGTGTGGCTGCATCCTCAGGTGGAGGGAACTCCAGCTTCTAATTGGCTCATGTTAATTTCATTTTAGTGGATATCATGGAAATAAAAGAAATCCGCCCAGGG	-			P-0018687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1	69	0	0	ENST00000359376.3:c.194-501_228del		p.X65_splice	ENST00000359376	NM_002661.3	65																																																																															
TET2	54790	MSKCC	GRCh37	4	106157851	106157851	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	67	269	0	ENST00000380013.4:c.2752A>G	p.Arg918Gly	p.R918G	ENST00000380013	NM_001127208.2	918	Agg/Ggg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	240	547	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	366	816	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0018758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	294	418	1	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717678	89717678	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	442	734	2	ENST00000371953.3:c.703G>T	p.Glu235Ter	p.E235*	ENST00000371953	NM_000314.4	235	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591133	67591134	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	191	471	0	ENST00000274335.5:c.1727dup	p.Arg577GlufsTer25	p.R577Efs*25	ENST00000274335		576	acg/aCcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	104	595	6	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0018794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	83	534	2	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368202	45368202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	78	353	3	ENST00000262160.6:c.1400C>T	p.Ser467Leu	p.S467L	ENST00000262160	NM_005901.5	467	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	121	796	7	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	42	244	1	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71101750	71101751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	52	270	2	ENST00000318789.4:c.447dup	p.Gln150ThrfsTer20	p.Q150Tfs*20	ENST00000318789	NM_032682.5	149	-/A																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245393	153245393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	143	645	10	ENST00000281708.4:c.1798G>T	p.Asp600Tyr	p.D600Y	ENST00000281708	NM_033632.3	600	Gat/Tat																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984408	201984409	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	184	766	9	ENST00000359651.3:c.1075dup	p.Ser359LysfsTer112	p.S359Kfs*112	ENST00000359651		358	tca/tcAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715875	61715875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	23	560	0	ENST00000401558.2:c.2054T>C	p.Val685Ala	p.V685A	ENST00000401558	NM_003400.3	685	gTc/gCc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22161980	22161980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	61	714	0	ENST00000215832.6:c.275C>T	p.Ala92Val	p.A92V	ENST00000215832	NM_002745.4	92	gCa/gTa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417861	138417861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	70	867	0	ENST00000289153.2:c.1658A>G	p.Asn553Ser	p.N553S	ENST00000289153	NM_006219.2	553	aAt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	560	918	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982405	201982405	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	806	1051	3	ENST00000359651.3:c.784G>T	p.Glu262Ter	p.E262*	ENST00000359651		262	Gag/Tag																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248569	8248569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	174	986	1	ENST00000335790.3:c.318C>A	p.Asp106Glu	p.D106E	ENST00000335790	NM_002315.2	106	gaC/gaA																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589843	69589843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	27	58	0	ENST00000168712.1:c.10C>A	p.Pro4Thr	p.P4T	ENST00000168712	NM_002007.2	4	Ccc/Acc																																																																														
PGR	5241	MSKCC	GRCh37	11	100933240	100933240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	149	750	0	ENST00000325455.5:c.2150G>T	p.Ser717Ile	p.S717I	ENST00000325455	NM_001202474.3	717	aGt/aTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445766	49445768	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1788	244	1551	0	ENST00000301067.7:c.1698_1700del	p.Pro567del	p.P567del	ENST00000301067	NM_003482.3	566	ccACCt/cct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32969050	32969050	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	259	607	0	ENST00000380152.3:c.9481A>C	p.Lys3161Gln	p.K3161Q	ENST00000380152		3161	Aaa/Caa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226447	41226447	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	486	994	0	ENST00000357654.3:c.4576G>T	p.Glu1526Ter	p.E1526*	ENST00000357654	NM_007294.3	1526	Gag/Tag																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872681	136872681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	247	647	0	ENST00000241393.3:c.817G>T	p.Gly273Trp	p.G273W	ENST00000241393	NM_003467.2	273	Ggg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161862	47161862	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	373	805	0	ENST00000409792.3:c.4264C>T	p.Gln1422Ter	p.Q1422*	ENST00000409792	NM_014159.6	1422	Cag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440906	52440906	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	458	784	3	ENST00000460680.1:c.598G>T	p.Glu200Ter	p.E200*	ENST00000460680	NM_004656.3	200	Gag/Tag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144602	55144602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	296	656	1	ENST00000257290.5:c.2076C>A	p.Ser692Arg	p.S692R	ENST00000257290	NM_006206.4	692	agC/agA																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31435899	31435899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	152	783	1	ENST00000344624.3:c.3015G>T	p.Gln1005His	p.Q1005H	ENST00000344624		1005	caG/caT																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056449	26056449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	73	341	0	ENST00000343677.2:c.208G>C	p.Gly70Arg	p.G70R	ENST00000343677	NM_005319.3	70	Ggc/Cgc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800547	32800547	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	522	1207	0	ENST00000374899.4:c.1000G>T	p.Glu334Ter	p.E334*	ENST00000374899	NM_018833.2	334	Gaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647493	117647493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	341	861	0	ENST00000368508.3:c.5451G>T	p.Trp1817Cys	p.W1817C	ENST00000368508	NM_002944.2	1817	tgG/tgT																																																																														
ATRX	546	MSKCC	GRCh37	X	76855966	76855966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	315	1004	0	ENST00000373344.5:c.5634G>T	p.Met1878Ile	p.M1878I	ENST00000373344	NM_000489.3	1878	atG/atT																																																																														
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	342	901	1	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178016	56178016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	52	669	0	ENST00000399503.3:c.2989A>G	p.Thr997Ala	p.T997A	ENST00000399503	NM_005921.1	997	Act/Gct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019652-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	104	876	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429319	78429326	+	frameshift_variant	Frame_Shift_Del	DEL	CACCAGGT	CACCAGGT	-			P-0019652-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	40	709	3	ENST00000370768.2:c.1116_1123del	p.Pro373ThrfsTer5	p.P373Tfs*5	ENST00000370768	NM_003902.3	372	ccACCTGGTGga/ccga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244759	41244759	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019652-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	68	858	0	ENST00000357654.3:c.2789del	p.Pro930LeufsTer70	p.P930Lfs*70	ENST00000357654	NM_007294.3	930	cCt/ct																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215381	5215381	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019652-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	36	690	0	ENST00000357368.4:c.4237C>G	p.Leu1413Val	p.L1413V	ENST00000357368	NM_002850.3	1413	Ctg/Gtg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794491	242794491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019652-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	36	771	1	ENST00000334409.5:c.451G>T	p.Val151Leu	p.V151L	ENST00000334409	NM_005018.2	151	Gtg/Ttg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484779	57484779	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019652-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	35	622	1	ENST00000371085.3:c.759C>A	p.Tyr253Ter	p.Y253*	ENST00000371085	NM_000516.4	253	taC/taA																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458554	12458554	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019652-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	29	781	1	ENST00000287820.6:c.1171T>A	p.Phe391Ile	p.F391I	ENST00000287820	NM_015869.4	391	Ttt/Att																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913901	32913902	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0019975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	85	762	0	ENST00000380152.3:c.5410_5411del	p.Val1804LysfsTer2	p.V1804Kfs*2	ENST00000380152		1803	acTGta/acta																																																																														
STK11	6794	MSKCC	GRCh37	19	1226520	1226520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	193	861	0	ENST00000326873.7:c.1176G>T	p.Met392Ile	p.M392I	ENST00000326873	NM_000455.4	392	atG/atT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290069	15290069	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	213	852	0	ENST00000263388.2:c.3485A>G	p.Asp1162Gly	p.D1162G	ENST00000263388	NM_000435.2	1162	gAt/gGt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25973009	25973010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0019975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	105	563	0	ENST00000435504.4:c.1414_1415dup	p.Glu473MetfsTer50	p.E473Mfs*50	ENST00000435504		472	cat/caCAt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25973016	25973016	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	130	597	0	ENST00000435504.4:c.1409A>C	p.Asn470Thr	p.N470T	ENST00000435504		470	aAt/aCt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5240234	5240247	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGAGGAGCTCGT	GAAGAGGAGCTCGT	C			P-0019975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	158	870	0	ENST00000357368.4:c.1667_1680delinsG	p.Tyr556CysfsTer25	p.Y556Cfs*25	ENST00000357368	NM_002850.3	556	tACGAGCTCCTCTTC/tG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0020021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	921	411	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11273604	11273604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	393	260	0	ENST00000361445.4:c.3137C>G	p.Thr1046Ser	p.T1046S	ENST00000361445	NM_004958.3	1046	aCc/aGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258338	16258338	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	814	475	0	ENST00000375759.3:c.5603T>A	p.Leu1868Ter	p.L1868*	ENST00000375759	NM_015001.2	1868	tTg/tAg																																																																														
RB1	5925	MSKCC	GRCh37	13	48936841	48936948	+	splice_region_variant,intron_variant	Splice_Region	DEL	AGTAGTAGAATGTTACCAAGATTATTTTTGACCTAAGTTATAGTTAGAATACTTCATTATTTTATATGATGGATGTACAATTGTTCTTATCTAATTTACCACTTTTAC	AGTAGTAGAATGTTACCAAGATTATTTTTGACCTAAGTTATAGTTAGAATACTTCATTATTTTATATGATGGATGTACAATTGTTCTTATCTAATTTACCACTTTTAC	-			P-0020021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	151	48	0	ENST00000267163.4:c.719-108_719-1del		p.X240_splice	ENST00000267163	NM_000321.2	240																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32163678	32163678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	263	306	0	ENST00000375023.3:c.5548G>A	p.Val1850Met	p.V1850M	ENST00000375023	NM_004557.3	1850	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	352	797	1	ENST00000269305.4:c.724T>C	p.Cys242Arg	p.C242R	ENST00000269305	NM_001126112.2	242	Tgc/Cgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259258	16259258	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	117	575	0	ENST00000375759.3:c.6523G>T	p.Val2175Leu	p.V2175L	ENST00000375759	NM_015001.2	2175	Gtg/Ttg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261562	16261562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	191	776	0	ENST00000375759.3:c.8827G>C	p.Val2943Leu	p.V2943L	ENST00000375759	NM_015001.2	2943	Gtt/Ctt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831165	72831165	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	126	611	0	ENST00000268489.5:c.5416G>T	p.Glu1806Ter	p.E1806*	ENST00000268489	NM_006885.3	1806	Gag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643869	52643869	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	142	652	0	ENST00000394830.3:c.2027G>C	p.Arg676Thr	p.R676T	ENST00000394830	NM_018313.4	676	aGg/aCg																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1961420	1961420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	359	847	0	ENST00000382891.5:c.3208A>G	p.Thr1070Ala	p.T1070A	ENST00000382891	NM_133335.3	1070	Aca/Gca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0020137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	289	952	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	42	334	1	ENST00000304494.5:c.44G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tGg/tAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974783	21974783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	42	334	1	ENST00000304494.5:c.44G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tGg/tAg																																																																														
MGA	23269	MSKCC	GRCh37	15	42005625	42005625	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	72	672	0	ENST00000219905.7:c.3361G>T	p.Glu1121Ter	p.E1121*	ENST00000219905	NM_001164273.1	1121	Gag/Tag																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46739340	46739340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	144	717	0	ENST00000371975.4:c.1531C>T	p.Arg511Cys	p.R511C	ENST00000371975	NM_003579.3	511	Cgt/Tgt																																																																														
AXL	558	MSKCC	GRCh37	19	41743919	41743920	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0020159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	231	997	0	ENST00000301178.4:c.855_856insGG	p.Gln286GlyfsTer12	p.Q286Gfs*12	ENST00000301178	NM_021913.4	285	tcg/tcGGg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266509	198266509	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	38	756	0	ENST00000335508.6:c.2327A>C	p.Glu776Ala	p.E776A	ENST00000335508	NM_012433.2	776	gAa/gCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8436639	8436639	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	39	897	0	ENST00000356435.5:c.4039del	p.Glu1347LysfsTer3	p.E1347Kfs*3	ENST00000356435		1347	Gaa/aa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11189883	11189883	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	237	472	0	ENST00000361445.4:c.5626A>C	p.Thr1876Pro	p.T1876P	ENST00000361445	NM_004958.3	1876	Acc/Ccc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088659	27088659	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	418	907	1	ENST00000324856.7:c.2272delC	p.Gln758ArgfsTer75	p.Q758Rfs*75	ENST00000324856	NM_006015.4	756	aaC/aa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937848	36937848	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	400	877	0	ENST00000361632.4:c.988A>G	p.Thr330Ala	p.T330A	ENST00000361632		330	Acc/Gcc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245927443	245927443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	64	578	5	ENST00000388985.4:c.1085delT	p.Phe362SerfsTer12	p.F362Sfs*12	ENST00000388985		362	tTc/tc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88649922	88649922	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	280	659	0	ENST00000372037.3:c.176del	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	57	ccT/cc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912183	114912183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	331	679	0	ENST00000543371.1:c.1253C>T	p.Ser418Phe	p.S418F	ENST00000543371	NM_001198531.1	418	tCc/tTc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	234	520	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944170	71944170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	319	769	1	ENST00000298229.2:c.2003G>A	p.Arg668Gln	p.R668Q	ENST00000298229	NM_001567.3	668	cGg/cAg																																																																														
CBL	867	MSKCC	GRCh37	11	119077232	119077233	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	169	653	0	ENST00000264033.4:c.125_127dup	p.His42dup	p.H42dup	ENST00000264033	NM_005188.3	42	-/CAC																																																																														
KDM5A	5927	MSKCC	GRCh37	12	431719	431719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	292	686	0	ENST00000399788.2:c.2290C>T	p.Arg764Ter	p.R764*	ENST00000399788	NM_001042603.1	764	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123837	46123837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	179	370	0	ENST00000334344.6:c.109delA	p.Ile37SerfsTer21	p.I37Sfs*21	ENST00000334344	NM_152641.2	35	Aaa/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416546	49416546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	311	610	1	ENST00000301067.7:c.16165C>T	p.Arg5389Trp	p.R5389W	ENST00000301067	NM_003482.3	5389	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431746	49431748	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	299	745	1	ENST00000301067.7:c.9391_9393del	p.Pro3131del	p.P3131del	ENST00000301067	NM_003482.3	3131	CCT/-																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438688	49438688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	404	827	0	ENST00000301067.7:c.4802G>A	p.Arg1601His	p.R1601H	ENST00000301067	NM_003482.3	1601	cGt/cAt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885996	111885996	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	312	662	0	ENST00000341259.2:c.1618C>T	p.Gln540Ter	p.Q540*	ENST00000341259	NM_005475.2	540	Cag/Tag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	192	451	8	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436635	110436635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	379	1097	0	ENST00000375856.3:c.1766A>G	p.Gln589Arg	p.Q589R	ENST00000375856	NM_003749.2	589	cAg/cGg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777898	3777898	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	400	982	5	ENST00000262367.5:c.7150del	p.His2384ThrfsTer12	p.H2384Tfs*12	ENST00000262367	NM_004380.2	2384	Cac/ac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778302	3778302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	322	658	1	ENST00000262367.5:c.6746G>A	p.Arg2249His	p.R2249H	ENST00000262367	NM_004380.2	2249	cGc/cAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	212	450	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830937	72830937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	247	531	0	ENST00000268489.5:c.5644A>G	p.Ile1882Val	p.I1882V	ENST00000268489	NM_006885.3	1882	Atc/Gtc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993143	72993143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1368	159	945	0	ENST00000268489.5:c.902C>T	p.Ala301Val	p.A301V	ENST00000268489	NM_006885.3	301	gCg/gTg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	73	350	0	ENST00000447079.4:c.4381_4382dup	p.Pro1462AlafsTer38	p.P1462Afs*38	ENST00000447079	NM_015083.1	1459	tgg/tGGgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868201	37868201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	322	695	1	ENST00000269571.5:c.922G>A	p.Val308Met	p.V308M	ENST00000269571		308	Gtg/Atg																																																																														
RARA	5914	MSKCC	GRCh37	17	38506084	38506084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	322	711	1	ENST00000254066.5:c.376C>T	p.Arg126Trp	p.R126W	ENST00000254066	NM_000964.3	126	Cgg/Tgg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	390	789	3	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56801430	56801430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	276	648	1	ENST00000337432.4:c.934C>T	p.Arg312Trp	p.R312W	ENST00000337432	NM_058216.2	312	Cgg/Tgg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59821817	59821817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	308	744	4	ENST00000259008.2:c.2233G>A	p.Ala745Thr	p.A745T	ENST00000259008	NM_032043.2	745	Gca/Aca																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533027	63533027	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	365	780	0	ENST00000307078.5:c.1867A>G	p.Met623Val	p.M623V	ENST00000307078	NM_004655.3	623	Atg/Gtg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533767	63533767	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	284	659	0	ENST00000307078.5:c.1387C>A	p.Arg463Ser	p.R463S	ENST00000307078	NM_004655.3	463	Cgc/Agc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78935227	78935227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	399	852	0	ENST00000306801.3:c.3639G>T	p.Trp1213Cys	p.W1213C	ENST00000306801	NM_020761.2	1213	tgG/tgT																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207593	2207593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	305	699	0	ENST00000398665.3:c.877G>A	p.Val293Met	p.V293M	ENST00000398665	NM_032482.2	293	Gtg/Atg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	60	158	1	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10259657	10259657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	289	587	3	ENST00000340748.4:c.2575G>A	p.Asp859Asn	p.D859N	ENST00000340748		859	Gac/Aac																																																																														
CALR	811	MSKCC	GRCh37	19	13054390	13054390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	331	674	0	ENST00000316448.5:c.1000A>G	p.Asn334Asp	p.N334D	ENST00000316448	NM_004343.3	334	Aac/Gac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	316	1003	5	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303262	15303262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1655	174	1211	2	ENST00000263388.2:c.266G>A	p.Gly89Asp	p.G89D	ENST00000263388	NM_000435.2	89	gGc/gAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214884	36214884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	367	949	0	ENST00000222270.7:c.3310C>T	p.Arg1104Trp	p.R1104W	ENST00000222270	NM_014727.1	1104	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227675	36227675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	342	807	0	ENST00000222270.7:c.7244G>A	p.Arg2415His	p.R2415H	ENST00000222270	NM_014727.1	2415	cGc/cAc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46609673	46609673	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	370	774	2	ENST00000263734.3:c.2402delC	p.Pro801HisfsTer39	p.P801Hfs*39	ENST00000263734	NM_001430.4	799	ttC/tt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703523	47703524	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	276	715	0	ENST00000233146.2:c.2024_2025del	p.Lys675IlefsTer23	p.K675Ifs*23	ENST00000233146	NM_000251.2	675	AAa/a																																																																														
MSH2	4436	MSKCC	GRCh37	2	47707957	47707957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	248	570	0	ENST00000233146.2:c.2581C>A	p.Gln861Lys	p.Q861K	ENST00000233146	NM_000251.2	861	Caa/Aaa																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	350	953	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	242	287	4	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735559	40735559	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	234	541	1	ENST00000373198.4:c.3314C>T	p.Ala1105Val	p.A1105V	ENST00000373198	NM_133170.3	1105	gCt/gTt																																																																														
ERG	2078	MSKCC	GRCh37	21	39764347	39764347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	275	648	2	ENST00000288319.7:c.765del	p.Arg256GlyfsTer35	p.R256Gfs*35	ENST00000288319	NM_182918.3	255	ccC/cc																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288437	21288437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	349	791	1	ENST00000354336.3:c.682A>G	p.Thr228Ala	p.T228A	ENST00000354336	NM_005207.3	228	Acc/Gcc																																																																														
NF2	4771	MSKCC	GRCh37	22	30032747	30032747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	185	354	0	ENST00000338641.4:c.122G>A	p.Trp41Ter	p.W41*	ENST00000338641	NM_000268.3	41	tGg/tAg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	226	468	1	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																														
RHOA	387	MSKCC	GRCh37	3	49405932	49405932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	355	774	0	ENST00000418115.1:c.206T>C	p.Leu69Pro	p.L69P	ENST00000418115	NM_001664.2	69	cTg/cCg																																																																														
MST1	4485	MSKCC	GRCh37	3	49725085	49725085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	328	759	1	ENST00000449682.2:c.259G>A	p.Val87Met	p.V87M	ENST00000449682	NM_020998.3	87	Gtg/Atg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119631596	119631596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	221	536	1	ENST00000316626.5:c.670G>A	p.Ala224Thr	p.A224T	ENST00000316626		224	Gca/Aca																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670333	134670333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	237	472	1	ENST00000398015.3:c.244G>A	p.Ala82Thr	p.A82T	ENST00000398015	NM_004441.4	82	Gcc/Acc																																																																														
ATR	545	MSKCC	GRCh37	3	142274740	142274741	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	176	455	2	ENST00000350721.4:c.2319_2320delAA	p.Lys773AsnfsTer3	p.K773Nfs*3	ENST00000350721	NM_001184.3	773	aaAAta/aata																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	233	460	1	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185165687	185165687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	64	524	1	ENST00000265026.3:c.962C>T	p.Ala321Val	p.A321V	ENST00000265026	NM_004721.4	321	gCg/gTg																																																																														
BCL6	604	MSKCC	GRCh37	3	187447033	187447033	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	351	825	0	ENST00000232014.4:c.1160A>C	p.Asn387Thr	p.N387T	ENST00000232014	NM_001130845.1	387	aAc/aCc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806176	1806176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1246	82	865	1	ENST00000260795.2:c.1195C>T	p.Arg399Cys	p.R399C	ENST00000260795		399	Cgc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806234	1806234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	357	850	1	ENST00000260795.2:c.1253C>T	p.Pro418Leu	p.P418L	ENST00000260795		418	cCg/cTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106158453	106158453	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	172	402	0	ENST00000380013.4:c.3354T>A	p.Asn1118Lys	p.N1118K	ENST00000380013	NM_001127208.2	1118	aaT/aaA																																																																														
TERT	7015	MSKCC	GRCh37	5	1264539	1264539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	235	533	0	ENST00000310581.5:c.2823G>T	p.Glu941Asp	p.E941D	ENST00000310581	NM_198253.2	941	gaG/gaT																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31410918	31410918	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	419	858	0	ENST00000344624.3:c.3602T>C	p.Ile1201Thr	p.I1201T	ENST00000344624		1201	aTa/aCa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	394	764	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	235	504	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	211	443	5	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522599	176522599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	407	890	1	ENST00000292408.4:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000292408	NM_213647.1	566	Cgc/Tgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	311	810	2	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032075	26032075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	228	605	1	ENST00000244661.2:c.214G>T	p.Val72Leu	p.V72L	ENST00000244661	NM_003537.3	72	Gtg/Ttg																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225432	26225432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	159	326	0	ENST00000360408.1:c.50C>T	p.Pro17Leu	p.P17L	ENST00000360408	NM_003532.2	17	cCg/cTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324210	31324211	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	126	365	0	ENST00000412585.2:c.352_353del	p.Thr118ProfsTer20	p.T118Pfs*20	ENST00000412585	NM_005514.6	118	ACc/c																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43746203	43746203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114262569		P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	292	764	2	ENST00000523873.1:c.322C>T	p.Arg108Trp	p.R108W	ENST00000523873		108	Cgg/Tgg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120866	94120866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	206	670	0	ENST00000369303.4:c.185A>G	p.Asp62Gly	p.D62G	ENST00000369303	NM_004440.3	62	gAt/gGt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129130	152129130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	343	865	6	ENST00000206249.3:c.83G>A	p.Arg28His	p.R28H	ENST00000206249	NM_000125.3	28	cGt/cAt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521872	157521872	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	247	536	0	ENST00000346085.5:c.4148del	p.Pro1383GlnfsTer65	p.P1383Qfs*65	ENST00000346085	NM_020732.3	1382	Ccc/cc																																																																														
BRAF	673	MSKCC	GRCh37	7	140434413	140434413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	233	575	1	ENST00000288602.6:c.2285C>T	p.Ala762Val	p.A762V	ENST00000288602	NM_004333.4	762	gCg/gTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	251	819	4	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974775	21974775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	78	291	0	ENST00000304494.5:c.52A>G	p.Thr18Ala	p.T18A	ENST00000304494	NM_000077.4	18	Acg/Gcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974775	21974775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	78	291	0	ENST00000304494.5:c.52A>G	p.Thr18Ala	p.T18A	ENST00000304494	NM_000077.4	18	Acg/Gcg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209424	98209424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	276	662	1	ENST00000331920.6:c.4114A>G	p.Thr1372Ala	p.T1372A	ENST00000331920	NM_000264.3	1372	Acg/Gcg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209648	98209648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	264	631	0	ENST00000331920.6:c.3890G>A	p.Arg1297Gln	p.R1297Q	ENST00000331920	NM_000264.3	1297	cGg/cAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412243	139412243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	430	875	1	ENST00000277541.6:c.1402C>A	p.Leu468Met	p.L468M	ENST00000277541	NM_017617.3	468	Ctg/Atg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044904	47044904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	40	502	2	ENST00000329236.7:c.1996C>A	p.Arg666Ser	p.R666S	ENST00000329236	NM_001204466.1	666	Cgt/Agt																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650362	48650362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	411	365	0	ENST00000376670.3:c.332C>T	p.Pro111Leu	p.P111L	ENST00000376670	NM_002049.3	111	cCc/cTc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222725	53222725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	433	480	0	ENST00000375401.3:c.4211T>C	p.Met1404Thr	p.M1404T	ENST00000375401	NM_004187.3	1404	aTg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	819	823	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163820	72163820	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	127	454	0	ENST00000357731.5:c.538A>C	p.Lys180Gln	p.K180Q	ENST00000357731	NM_173808.2	180	Aaa/Caa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342971	118342971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	137	306	0	ENST00000534358.1:c.1097G>C	p.Arg366Thr	p.R366T	ENST00000534358	NM_005933.3	366	aGg/aCg																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628754	21628754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	349	596	1	ENST00000421138.2:c.954C>G	p.Ile318Met	p.I318M	ENST00000421138		318	atC/atG																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647140	2647140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	168	582	0	ENST00000342085.4:c.1418G>A	p.Arg473Gln	p.R473Q	ENST00000342085	NM_002613.4	473	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857159	9857159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	152	510	1	ENST00000330684.3:c.4242G>T	p.Arg1414Ser	p.R1414S	ENST00000330684	NM_001134407.1	1414	agG/agT																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217877	2217877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	337	931	2	ENST00000398665.3:c.2651C>T	p.Pro884Leu	p.P884L	ENST00000398665	NM_032482.2	884	cCc/cTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141517	11141517	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	327	792	0	ENST00000344626.4:c.3494T>A	p.Leu1165His	p.L1165H	ENST00000344626	NM_003072.3	1165	cTc/cAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170797	11170801	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGA	GCCGA	-			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	239	738	0	ENST00000344626.4:c.4851_4855del	p.Ser1617ArgfsTer10	p.S1617Rfs*10	ENST00000344626	NM_003072.3	1615	cgGCCGAgc/cggc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561561	9561561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	403	550	0	ENST00000353224.5:c.221A>G	p.Asn74Ser	p.N74S	ENST00000353224	NM_177990.2	74	aAc/aGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944533	40944533	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	305	668	0	ENST00000373198.4:c.1969A>T	p.Ser657Cys	p.S657C	ENST00000373198	NM_133170.3	657	Agc/Tgc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390917	89390917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	106	581	0	ENST00000336596.2:c.983C>T	p.Ser328Leu	p.S328L	ENST00000336596	NM_005233.5	328	tCa/tTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539771	187539771	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	232	492	0	ENST00000441802.2:c.7969A>G	p.Thr2657Ala	p.T2657A	ENST00000441802	NM_005245.3	2657	Aca/Gca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629919	187629919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	308	665	1	ENST00000441802.2:c.1063G>A	p.Val355Met	p.V355M	ENST00000441802	NM_005245.3	355	Gtg/Atg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505014	149505014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	193	436	0	ENST00000261799.4:c.1801G>T	p.Val601Leu	p.V601L	ENST00000261799	NM_002609.3	601	Gtg/Ttg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637556	176637557	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	320	700	0	ENST00000439151.2:c.2157dup	p.Glu720ArgfsTer10	p.E720Rfs*10	ENST00000439151	NM_022455.4	719	gca/gcAa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680441	30680441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	610	658	2	ENST00000376406.3:c.1278A>G	p.Ile426Met	p.I426M	ENST00000376406	NM_014641.2	426	atA/atG																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800169	32800169	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	222	505	0	ENST00000374899.4:c.1213A>T	p.Thr405Ser	p.T405S	ENST00000374899	NM_018833.2	405	Acc/Tcc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271246	38271246	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	332	895	1	ENST00000425967.3:c.2462C>A	p.Ser821Ter	p.S821*	ENST00000425967	NM_001174067.1	821	tCa/tAa																																																																														
LYN	4067	MSKCC	GRCh37	8	56863308	56863308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	871	680	0	ENST00000519728.1:c.452G>T	p.Gly151Val	p.G151V	ENST00000519728	NM_002350.3	151	gGa/gTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29663934	29663934	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0020415-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			109	183	335	0	ENST00000358273.4:c.6427+2T>C		p.X2143_splice	ENST00000358273	NM_001042492.2	2143																																																																															
TSC1	7248	MSKCC	GRCh37	9	135781374	135781374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020415-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			787	148	640	1	ENST00000298552.3:c.1591G>A	p.Val531Met	p.V531M	ENST00000298552	NM_001162426.1	531	Gtg/Atg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	8	524	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	32	641	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061007	38061022	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCGGGGGCCGGCGC	GCCCGGGGGCCGGCGC	-			P-0020454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	19	460	0	ENST00000250448.2:c.967_982del	p.Ala323ProfsTer22	p.A323Pfs*22	ENST00000250448	NM_004496.3	323	GCGCCGGCCCCCGGGCcc/cc																																																																														
ATM	472	MSKCC	GRCh37	11	108201089	108201089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	41	595	0	ENST00000278616.4:c.7456C>G	p.Arg2486Gly	p.R2486G	ENST00000278616	NM_000051.3	2486	Cga/Gga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061121	38061192	+	inframe_deletion	In_Frame_Del	DEL	CGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGA	CGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGA	-			P-0020454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	147	345	0	ENST00000250448.2:c.797_868del	p.Phe266_Gly290delinsCys	p.F266_G290delinsC	ENST00000250448	NM_004496.3	266	tTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGgc/tgc																																																																														
TET2	54790	MSKCC	GRCh37	4	106193733	106193733	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	19	281	0	ENST00000380013.4:c.4195A>G	p.Thr1399Ala	p.T1399A	ENST00000380013	NM_001127208.2	1399	Act/Gct																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330531	65330531	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	99	866	1	ENST00000342505.4:c.1115T>A	p.Ile372Asn	p.I372N	ENST00000342505	NM_002227.2	372	aTc/aAc																																																																														
ATM	472	MSKCC	GRCh37	11	108106537	108106537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	56	626	0	ENST00000278616.4:c.472G>A	p.Glu158Lys	p.E158K	ENST00000278616	NM_000051.3	158	Gaa/Aaa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437500	110437500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	115	1258	1	ENST00000375856.3:c.901del	p.Arg301GlyfsTer90	p.R301Gfs*90	ENST00000375856	NM_003749.2	301	Cgg/gg																																																																														
CARM1	10498	MSKCC	GRCh37	19	10982492	10982773	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACCATCGGCGACGCGAACGGCGAGATCCAGCGGCACGCGGAGCAGCAGGCGCTGCGCCTCGAGGTGCGCGCCGGCCCGGACTCGGCGGGCATCGCCCTCTACAGCCGTGAGTACGGGGCCCCGGGGCAGGCGCAGGGCCGGGGCTGCTCACGAGGCCGGCCCGGGGCGGGGGCCGGCGGGGAGGGGCCCTGAGCGCGGGGGCCTGGCGTGGGGTCCCCGGGACTGAGCCGGTGGCCTGCAGGGAGCGACCGTGGAGGGCCGGTGCCAGGGGACAGACAGAG	CACCATCGGCGACGCGAACGGCGAGATCCAGCGGCACGCGGAGCAGCAGGCGCTGCGCCTCGAGGTGCGCGCCGGCCCGGACTCGGCGGGCATCGCCCTCTACAGCCGTGAGTACGGGGCCCCGGGGCAGGCGCAGGGCCGGGGCTGCTCACGAGGCCGGCCCGGGGCGGGGGCCGGCGGGGAGGGGCCCTGAGCGCGGGGGCCTGGCGTGGGGTCCCCGGGACTGAGCCGGTGGCCTGCAGGGAGCGACCGTGGAGGGCCGGTGCCAGGGGACAGACAGAG	-			P-0020459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	17	384	0	ENST00000327064.4:c.114_220+175del		p.X38_splice	ENST00000327064	NM_199141.1	38																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52696169	52696169	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	138	1423	1	ENST00000394830.3:c.508C>T	p.Gln170Ter	p.Q170*	ENST00000394830	NM_018313.4	170	Cag/Tag																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169993073	169993073	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	75	857	0	ENST00000295797.4:c.703G>A	p.Glu235Lys	p.E235K	ENST00000295797	NM_002740.5	235	Gag/Aag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949143	44949143	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	10	423	0	ENST00000377967.4:c.3704A>G	p.Asn1235Ser	p.N1235S	ENST00000377967	NM_021140.2	1235	aAc/aGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039310	47039310	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	23	705	0	ENST00000329236.7:c.702C>G	p.Ser234Arg	p.S234R	ENST00000329236	NM_001204466.1	234	agC/agG																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185002	123185002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	11	288	0	ENST00000218089.9:c.1049C>G	p.Ala350Gly	p.A350G	ENST00000218089	NM_001042749.1	350	gCt/gGt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215276	123215276	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	73	486	0	ENST00000218089.9:c.2822C>G	p.Ser941Ter	p.S941*	ENST00000218089	NM_001042749.1	941	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	22	315	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112176020	112176020	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	53	404	3	ENST00000257430.4:c.4729G>T	p.Glu1577Ter	p.E1577*	ENST00000257430	NM_000038.5	1577	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	49030460	49030463	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0020574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	131	666	0	ENST00000267163.4:c.1937_1940del	p.Ser646PhefsTer11	p.S646Ffs*11	ENST00000267163	NM_000321.2	645	acCTCT/ac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061243	38061243	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	148	952	0	ENST00000250448.2:c.746A>T	p.Asp249Val	p.D249V	ENST00000250448	NM_004496.3	249	gAc/gTc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627445	14627445	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	104	785	0	ENST00000254322.2:c.625A>G	p.Lys209Glu	p.K209E	ENST00000254322	NM_006145.1	209	Aag/Gag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057600	180057600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	220	1129	0	ENST00000261937.6:c.355C>T	p.Arg119Cys	p.R119C	ENST00000261937	NM_182925.4	119	Cgc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610705	52610705	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	94	427	0	ENST00000394830.3:c.3468del	p.Val1157TyrfsTer36	p.V1157Yfs*36	ENST00000394830	NM_018313.4	1156	aaA/aa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252776	10252776	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	207	794	0	ENST00000340748.4:c.3189G>C	p.Glu1063Asp	p.E1063D	ENST00000340748		1063	gaG/gaC																																																																														
TET2	54790	MSKCC	GRCh37	4	106196958	106196958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	87	268	0	ENST00000380013.4:c.5291A>G	p.His1764Arg	p.H1764R	ENST00000380013	NM_001127208.2	1764	cAt/cGt																																																																														
SYK	6850	MSKCC	GRCh37	9	93606314	93606314	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs16906862		P-0020637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	156	829	1	ENST00000375746.1:c.134G>A	p.Arg45His	p.R45H	ENST00000375746	NM_001174167.1	45	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	48	757	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0020672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	18	564	3	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	240	834	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185050	123185050	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	146	351	0	ENST00000218089.9:c.1097T>G	p.Leu366Arg	p.L366R	ENST00000218089	NM_001042749.1	366	cTt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022914	27022942	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	-			P-0020814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	30	103	0	ENST00000324856.7:c.31_59del	p.Ser11AlafsTer90	p.S11Afs*90	ENST00000324856	NM_006015.4	7	cCCGCCGCCGCCAGCAGCCTGGGCAACCCG/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7578446	7578455	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCCATGGC	TGGCCATGGC	-			P-0020814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	457	1111	0	ENST00000269305.4:c.475_484del	p.Ala159SerfsTer8	p.A159Sfs*8	ENST00000269305	NM_001126112.2	159	GCCATGGCCAtc/tc																																																																														
STK11	6794	MSKCC	GRCh37	19	1207059	1207059	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	182	1102	1	ENST00000326873.7:c.147C>A	p.Tyr49Ter	p.Y49*	ENST00000326873	NM_000455.4	49	taC/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0020844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	238	733	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169853	32169853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	219	730	0	ENST00000375023.3:c.3755C>T	p.Thr1252Ile	p.T1252I	ENST00000375023	NM_004557.3	1252	aCt/aTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258712	16258713	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0020844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	147	589	2	ENST00000375759.3:c.5977_5978delinsTT	p.Gly1993Phe	p.G1993F	ENST00000375759	NM_015001.2	1993	GGt/TTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831390	72831390	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	63	402	0	ENST00000268489.5:c.5191C>T	p.Gln1731Ter	p.Q1731*	ENST00000268489	NM_006885.3	1731	Cag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591131	67591132	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0021353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	245	424	0	ENST00000274335.5:c.1725_1726del	p.Lys575AsnfsTer26	p.K575Nfs*26	ENST00000274335		575	aAG/a																																																																														
ATRX	546	MSKCC	GRCh37	X	76909587	76909587	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0021353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	390	818	1	ENST00000373344.5:c.4317+1G>A		p.X1439_splice	ENST00000373344	NM_000489.3	1439																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061144	38061165	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCCGCTCCCGCCCCCGCCGC	CTTCCGCTCCCGCCCCCGCCGC	-			P-0021673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	26	361	1	ENST00000250448.2:c.824_845del	p.Gly275AlafsTer39	p.G275Afs*39	ENST00000250448	NM_004496.3	275	gGCGGCGGGGGCGGGAGCGGAAGc/gc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	99	352	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46509382	46509382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	95	583	0	ENST00000262741.5:c.1349A>G	p.Tyr450Cys	p.Y450C	ENST00000262741	NM_003629.3	450	tAc/tGc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231410	98231410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	214	453	0	ENST00000331920.6:c.1873G>A	p.Val625Ile	p.V625I	ENST00000331920	NM_000264.3	625	Gtt/Att																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	191	672	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
ATR	545	MSKCC	GRCh37	3	142215201	142215201	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0021741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	50	293	0	ENST00000350721.4:c.5898+2T>C		p.X1966_splice	ENST00000350721	NM_001184.3	1966																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874338	151874338	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	136	584	0	ENST00000262189.6:c.8200A>C	p.Thr2734Pro	p.T2734P	ENST00000262189	NM_170606.2	2734	Act/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	505	739	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	11	363	1	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245759	41245759	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	163	675	1	ENST00000357654.3:c.1789G>T	p.Glu597Ter	p.E597*	ENST00000357654	NM_007294.3	597	Gaa/Taa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103520607	103520607	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	92	319	0	ENST00000355739.4:c.2678C>T	p.Ser893Leu	p.S893L	ENST00000355739	NM_000123.3	893	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	132	503	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0022112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	68	802	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	79	403	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	79	403	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	79	403	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	8	819	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346841	89346841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			96	17	317	0	ENST00000301030.4:c.6109G>A	p.Val2037Ile	p.V2037I	ENST00000301030	NM_001256183.1	2037	Gtc/Atc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573581	48573585	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTT	TTCTT	-			P-0022112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			96	22	399	0	ENST00000342988.3:c.166_170del	p.Ser56AsnfsTer12	p.S56Nfs*12	ENST00000342988	NM_005359.5	55	gaTTCTTta/gata																																																																														
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	184	1117	2	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24167602	24167602	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0022987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	72	610	0	ENST00000263121.7:c.986G>C	p.Ser329Thr	p.S329T	ENST00000263121	NM_003073.3	329	aGc/aCc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730916	40730916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	42	583	2	ENST00000373198.4:c.3619C>T	p.Arg1207Cys	p.R1207C	ENST00000373198	NM_133170.3	1207	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112102927	112102927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	16	438	0	ENST00000257430.4:c.262C>T	p.Arg88Trp	p.R88W	ENST00000257430	NM_000038.5	88	Cgg/Tgg																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271596	26271596	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	11	330	0	ENST00000305910.3:c.17A>T	p.Gln6Leu	p.Q6L	ENST00000305910	NM_003534.2	6	cAg/cTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969194	93969194	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	18	400	1	ENST00000369303.4:c.1802A>C	p.Lys601Thr	p.K601T	ENST00000369303	NM_004440.3	601	aAa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	371	989	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028657	12028657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	146	780	1	ENST00000353533.5:c.860G>A	p.Arg287His	p.R287H	ENST00000353533	NM_003010.3	287	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0023295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	158	612	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174884	112174885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	106	564	2	ENST00000257430.4:c.3596dup	p.Ser1200GlufsTer8	p.S1200Efs*8	ENST00000257430	NM_000038.5	1198	tca/tcAa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117614	70117614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	529	972	3	ENST00000245479.2:c.82G>T	p.Glu28Ter	p.E28*	ENST00000245479	NM_000346.3	28	Gag/Tag																																																																														
MSH3	4437	MSKCC	GRCh37	5	79950709	79950717	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGGCC	GCAGCGGCC	-			P-0023295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	77	365	2	ENST00000265081.6:c.178_186delGCCGCAGCG	p.Ala60_Ala62del	p.A60_A62del	ENST00000265081	NM_002439.4	55	GCAGCGGCC/-																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	117	646	4	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274121	10274121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	63	612	4	ENST00000330684.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000330684	NM_001134407.1	50	Gaa/Aaa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64128676	64128676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	33	614	2	ENST00000334205.4:c.533C>T	p.Thr178Met	p.T178M	ENST00000334205	NM_003942.2	178	aCg/aTg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061004	38061005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	61	373	0	ENST00000250448.2:c.984dup	p.Ala329ArgfsTer86	p.A329Rfs*86	ENST00000250448	NM_004496.3	328	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	166	715	1	ENST00000269305.4:c.530C>T	p.Pro177Leu	p.P177L	ENST00000269305	NM_001126112.2	177	cCc/cTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257227	16257227	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	390	796	0	ENST00000375759.3:c.4492A>T	p.Lys1498Ter	p.K1498*	ENST00000375759	NM_015001.2	1498	Aag/Tag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562207	21562207	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	29	972	0	ENST00000382592.4:c.1712A>G	p.Lys571Arg	p.K571R	ENST00000382592	NM_014572.2	571	aAg/aGg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10284550	10284550	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	164	723	1	ENST00000340748.4:c.632A>T	p.Glu211Val	p.E211V	ENST00000340748		211	gAa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	135	502	1	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	22	434	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29654622	29654622	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	36	365	0	ENST00000358273.4:c.5374T>G	p.Cys1792Gly	p.C1792G	ENST00000358273	NM_001042492.2	1792	Tgc/Ggc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058446	69058446	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	57	439	0	ENST00000288368.4:c.4090G>A	p.Val1364Ile	p.V1364I	ENST00000288368	NM_024870.2	1364	Gtt/Att																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0025728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	236	567	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0025728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	122	597	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415858	49415859	+	inframe_insertion	In_Frame_Ins	INS	-	-	GATGATGATTTTGTCCTC			P-0025728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	53	344	0	ENST00000301067.7:c.16471_16488dup	p.Glu5491_Ile5496dup	p.E5491_I5496dup	ENST00000301067	NM_003482.3	5491	-/GAGGACAAAATCATCATC																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504413	186504417	+	frameshift_variant	Frame_Shift_Del	DEL	TTATA	TTATA	-			P-0025728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	95	533	0	ENST00000323963.5:c.753_757del	p.Tyr251Ter	p.Y251*	ENST00000323963		250	ttTTATAtt/tttt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	120	403	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	120	403	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	120	403	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	397	615	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298516	11298516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	86	568	0	ENST00000361445.4:c.1945G>C	p.Val649Leu	p.V649L	ENST00000361445	NM_004958.3	649	Gtg/Ctg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206648245	206648245	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	124	540	0	ENST00000367120.3:c.266G>C	p.Cys89Ser	p.C89S	ENST00000367120	NM_014002.3	89	tGc/tCc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13949280	13949280	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	44	215	0	ENST00000405192.2:c.848G>C	p.Cys283Ser	p.C283S	ENST00000405192	NM_001163147.1	283	tGt/tCt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271298	38271298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	61	730	0	ENST00000425967.3:c.2410C>G	p.Leu804Val	p.L804V	ENST00000425967	NM_001174067.1	804	Ctg/Gtg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	44	185	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	12	239	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
ALK	238	MSKCC	GRCh37	2	29449806	29449806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	120	488	2	ENST00000389048.3:c.3049G>A	p.Asp1017Asn	p.D1017N	ENST00000389048	NM_004304.4	1017	Gat/Aat																																																																														
MET	4233	MSKCC	GRCh37	7	116380907	116380907	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0026238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	52	211	0	ENST00000397752.3:c.1529T>A	p.Ile510Asn	p.I510N	ENST00000397752	NM_000245.2	510	aTc/aAc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	47	262	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	72	380	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	9	425	0	ENST00000263121.7:c.1130G>T	p.Arg377Leu	p.R377L	ENST00000263121	NM_003073.3	377	cGt/cTt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2214485	2214485	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	78	352	0	ENST00000398665.3:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000398665	NM_032482.2	605	Gag/Tag																																																																														
ERF	2077	MSKCC	GRCh37	19	42754088	42754088	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0026240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	40	294	0	ENST00000222329.4:c.264C>G	p.Tyr88Ter	p.Y88*	ENST00000222329	NM_006494.2	88	taC/taG																																																																														
FANCA	2175	MSKCC	GRCh37	16	89857867	89857867	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148473140		P-0026244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	92	378	0	ENST00000389301.3:c.1303C>T	p.Arg435Cys	p.R435C	ENST00000389301	NM_000135.2	435	Cgc/Tgc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251184	99251184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	115	395	0	ENST00000268035.6:c.488C>T	p.Ala163Val	p.A163V	ENST00000268035	NM_000875.3	163	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	91	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95595814	95595814	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	36	249	0	ENST00000343455.3:c.729A>T	p.Leu243Phe	p.L243F	ENST00000343455	NM_177438.2	243	ttA/ttT																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660534	227660534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	106	235	0	ENST00000305123.5:c.2921G>C	p.Ser974Thr	p.S974T	ENST00000305123	NM_005544.2	974	aGc/aCc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721789	176721789	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	82	246	0	ENST00000439151.2:c.7420C>T	p.Gln2474Ter	p.Q2474*	ENST00000439151	NM_022455.4	2474	Cag/Tag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412721	63412721	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	97	244	0	ENST00000330258.3:c.446G>C	p.Gly149Ala	p.G149A	ENST00000330258	NM_152424.3	149	gGa/gCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	51	323	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0026332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	41	240	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0026332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	41	240	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0026332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	41	240	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610478	10610478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	55	378	0	ENST00000171111.5:c.232G>A	p.Asp78Asn	p.D78N	ENST00000171111	NM_203500.1	78	Gac/Aac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097143	11097143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	57	346	0	ENST00000344626.4:c.634G>A	p.Gly212Arg	p.G212R	ENST00000344626	NM_003072.3	212	Ggg/Agg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11118641	11118641	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0026332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	59	481	0	ENST00000344626.4:c.2065A>T	p.Lys689Ter	p.K689*	ENST00000344626	NM_003072.3	689	Aag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636770	8636771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	29	342	0	ENST00000356435.5:c.138dup	p.Ala47SerfsTer8	p.A47Sfs*8	ENST00000356435		46	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023720	27023721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0026384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	37	495	0	ENST00000324856.7:c.828_829dup	p.Gly277GlufsTer87	p.G277Efs*87	ENST00000324856	NM_006015.4	276	gga/gGAga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118890	70118890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	89	667	0	ENST00000245479.2:c.462C>A	p.Phe154Leu	p.F154L	ENST00000245479	NM_000346.3	154	ttC/ttA																																																																														
MED12	9968	MSKCC	GRCh37	X	70349948	70349948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	59	834	0	ENST00000374080.3:c.3931G>A	p.Val1311Met	p.V1311M	ENST00000374080		1311	Gtg/Atg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	201	805	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	37	727	1	ENST00000269571.5:c.2329G>A	p.Val777Met	p.V777M	ENST00000269571		777	Gtg/Atg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604764	48604765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	95	608	0	ENST00000342988.3:c.1587dup	p.His530ThrfsTer47	p.H530Tfs*47	ENST00000342988	NM_005359.5	529	tta/ttAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089513	27089513	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	130	791	1	ENST00000324856.7:c.2472del	p.Ser825ValfsTer8	p.S825Vfs*8	ENST00000324856	NM_006015.4	823	taC/ta																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983120	201983121	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	66	747	0	ENST00000359651.3:c.970dup	p.Met324AsnfsTer147	p.M324Nfs*147	ENST00000359651		323	-/A																																																																														
MGA	23269	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	161	614	2	ENST00000219905.7:c.7306C>T	p.Arg2436Cys	p.R2436C	ENST00000219905	NM_001164273.1	2436	Cgt/Tgt																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441542	40441542	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	98	804	0	ENST00000345506.4:c.113T>A	p.Ile38Asn	p.I38N	ENST00000345506	NM_003152.3	38	aTt/aAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440662	56440662	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	136	692	0	ENST00000407977.2:c.556A>T	p.Ile186Phe	p.I186F	ENST00000407977		186	Att/Ttt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56111780	56111780	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	24	33	1	ENST00000399503.3:c.380C>A	p.Ser127Ter	p.S127*	ENST00000399503	NM_005921.1	127	tCg/tAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873587	151873588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	110	645	0	ENST00000262189.6:c.8950dup	p.Ser2984PhefsTer18	p.S2984Ffs*18	ENST00000262189	NM_170606.2	2984	tct/tTct																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040963	47040964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	168	736	0	ENST00000329236.7:c.1260dup	p.Ala421ArgfsTer19	p.A421Rfs*19	ENST00000329236	NM_001204466.1	420	cgc/cgCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	310	592	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	199	750	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0026465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	140	519	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	217	719	0	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	129	425	0	ENST00000342988.3:c.1156G>A	p.Gly386Ser	p.G386S	ENST00000342988	NM_005359.5	386	Ggt/Agt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119906	70119907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	168	529	0	ENST00000245479.2:c.911dup	p.Val306GlyfsTer272	p.V306Gfs*272	ENST00000245479	NM_000346.3	303	cac/caCc																																																																														
ATM	472	MSKCC	GRCh37	11	108200991	108200991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	156	548	0	ENST00000278616.4:c.7358G>C	p.Arg2453Pro	p.R2453P	ENST00000278616	NM_000051.3	2453	cGt/cCt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423596	88423596	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	153	624	0	ENST00000360948.2:c.2239T>G	p.Phe747Val	p.F747V	ENST00000360948	NM_001012338.2	747	Ttc/Gtc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435160	56435160	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	350	614	0	ENST00000407977.2:c.1977delT	p.Ser661ProfsTer39	p.S661Pfs*39	ENST00000407977		659	ggT/gg																																																																														
TP63	8626	MSKCC	GRCh37	3	189526205	189526205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	240	700	1	ENST00000264731.3:c.469G>A	p.Asp157Asn	p.D157N	ENST00000264731	NM_003722.4	157	Gat/Aat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217150	66217150	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	185	588	0	ENST00000273854.3:c.2465C>G	p.Ser822Cys	p.S822C	ENST00000273854	NM_004439.5	822	tCc/tGc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672278	86672278	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	181	589	0	ENST00000274376.6:c.2080T>C	p.Ser694Pro	p.S694P	ENST00000274376	NM_002890.2	694	Tcc/Ccc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129946	69129946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	89	384	0	ENST00000288368.4:c.4700G>A	p.Arg1567Gln	p.R1567Q	ENST00000288368	NM_024870.2	1567	cGg/cAg																																																																														
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			76	232	497	1	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																														
CDH1	999	MSKCC	GRCh37	16	68844202	68844202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026615-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			94	341	713	0	ENST00000261769.5:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000261769	NM_004360.3	264	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184561	11184561	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	102	575	0	ENST00000361445.4:c.6656del	p.Asn2219ThrfsTer60	p.N2219Tfs*60	ENST00000361445	NM_004958.3	2219	aAc/ac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061248	38061248	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	330	852	0	ENST00000250448.2:c.741C>A	p.His247Gln	p.H247Q	ENST00000250448	NM_004496.3	247	caC/caA																																																																														
TET2	54790	MSKCC	GRCh37	4	106197498	106197498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	49	349	0	ENST00000380013.4:c.5831C>T	p.Ser1944Phe	p.S1944F	ENST00000380013	NM_001127208.2	1944	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	106	300	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	175	437	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591916	48591916	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	87	290	1	ENST00000342988.3:c.1079A>T	p.Asp360Val	p.D360V	ENST00000342988	NM_005359.5	360	gAt/gTt																																																																														
MET	4233	MSKCC	GRCh37	7	116397540	116397540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	59	325	0	ENST00000397752.3:c.1912A>G	p.Ile638Val	p.I638V	ENST00000397752	NM_000245.2	638	Ata/Gta																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	146	276	0	ENST00000371953.3:c.209+1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
TP53	7157	MSKCC	GRCh37	17	7576901	7576901	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	253	526	0	ENST00000269305.4:c.945del	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	315	tcT/tc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446422	49446422	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	223	522	0	ENST00000301067.7:c.1183C>T	p.Gln395Ter	p.Q395*	ENST00000301067	NM_003482.3	395	Cag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15960883	15960883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	179	294	1	ENST00000268712.3:c.6337C>G	p.Gln2113Glu	p.Q2113E	ENST00000268712	NM_006311.3	2113	Caa/Gaa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721909	176721909	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	92	477	0	ENST00000439151.2:c.7540C>G	p.Gln2514Glu	p.Q2514E	ENST00000439151	NM_022455.4	2514	Cag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	146	622	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	48	462	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	133	620	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	78	561	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	58	593	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0027476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	90	470	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0027476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	18	819	3	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425086	49425086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	152	908	3	ENST00000301067.7:c.13402C>T	p.Arg4468Trp	p.R4468W	ENST00000301067	NM_003482.3	4468	Cgg/Tgg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618570	37618572	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0027476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	139	680	0	ENST00000447079.4:c.248_250delTCT	p.Phe83del	p.F83del	ENST00000447079	NM_015083.1	82	acCTTc/acc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448508	89448508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	56	586	0	ENST00000336596.2:c.1472G>A	p.Gly491Asp	p.G491D	ENST00000336596	NM_005233.5	491	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112173602	112173602	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	67	459	0	ENST00000257430.4:c.2311G>T	p.Glu771Ter	p.E771*	ENST00000257430	NM_000038.5	771	Gaa/Taa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289317	33289317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	90	436	1	ENST00000374542.5:c.235G>A	p.Ala79Thr	p.A79T	ENST00000374542	NM_001141970.1	79	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	55	263	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	77	505	2	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	69	319	0	ENST00000275493.2:c.2281G>T	p.Asp761Tyr	p.D761Y	ENST00000275493	NM_005228.3	761	Gat/Tat																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710610	114710610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	54	364	0	ENST00000543371.1:c.95C>T	p.Ser32Phe	p.S32F	ENST00000543371	NM_001198531.1	32	tCc/tTc																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633594	69633594	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	23	128	0	ENST00000334134.2:c.108C>A	p.Tyr36Ter	p.Y36*	ENST00000334134	NM_005247.2	36	taC/taA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118366483	118366483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	56	331	0	ENST00000534358.1:c.5432G>A	p.Arg1811Gln	p.R1811Q	ENST00000534358	NM_005933.3	1811	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29684286	29684286	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	37	250	1	ENST00000358273.4:c.7870-1G>T		p.X2624_splice	ENST00000358273	NM_001042492.2	2624																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32184992	32184992	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	80	559	0	ENST00000375023.3:c.1676C>G	p.Pro559Arg	p.P559R	ENST00000375023	NM_004557.3	559	cCc/cGc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027725-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	68	577	1	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56168830	56168830	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0027725-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	151	473	0	ENST00000399503.3:c.1684C>T	p.Gln562Ter	p.Q562*	ENST00000399503	NM_005921.1	562	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	39	258	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	20	486	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0028008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	53	289	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830590	72830593	+	frameshift_variant	Frame_Shift_Del	DEL	AATC	AATC	-			P-0028010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	56	539	0	ENST00000268489.5:c.5988_5991del	p.Leu1996PhefsTer2	p.L1996Ffs*2	ENST00000268489	NM_006885.3	1996	ttGATT/tt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0028169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	148	427	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	709	546	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0028169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	630	291	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411868	63411868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1500	81	714	1	ENST00000330258.3:c.1299C>A	p.His433Gln	p.H433Q	ENST00000330258	NM_152424.3	433	caC/caA																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120971	115120971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	35	440	0	ENST00000257566.3:c.35G>T	p.Gly12Val	p.G12V	ENST00000257566	NM_016569.3	12	gGg/gTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412657	139412691	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTTGCCATTGACAGGGTTGGTGTCGCAGTTGGA	GCCTTGCCATTGACAGGGTTGGTGTCGCAGTTGGA	-			P-0028169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	134	545	0	ENST00000277541.6:c.1153_1187del	p.Ser385HisfsTer19	p.S385Hfs*19	ENST00000277541	NM_017617.3	385	TCCAACTGCGACACCAACCCTGTCAATGGCAAGGCc/c																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	30	621	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162336	47162336	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	186	299	0	ENST00000409792.3:c.3790C>T	p.Gln1264Ter	p.Q1264*	ENST00000409792	NM_014159.6	1264	Caa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557385	187557385	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	31	357	0	ENST00000441802.2:c.3977del	p.Lys1326ArgfsTer42	p.K1326Rfs*42	ENST00000441802	NM_005245.3	1326	aAg/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	25	314	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	99	323	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579538	7579538	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	113	438	0	ENST00000269305.4:c.149T>C	p.Ile50Thr	p.I50T	ENST00000269305	NM_001126112.2	50	aTt/aCt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	329	401	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614537	38614538	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	281	443	0	ENST00000299084.4:c.304dup	p.Thr102AsnfsTer7	p.T102Nfs*7	ENST00000299084	NM_152594.2	101	-/A																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482606	56482606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	108	426	0	ENST00000267101.3:c.1063A>G	p.Thr355Ala	p.T355A	ENST00000267101	NM_001982.3	355	Acc/Gcc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50479255	50479255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	75	109	0	ENST00000394963.4:c.103G>A	p.Gly35Arg	p.G35R	ENST00000394963	NM_003076.4	35	Ggg/Agg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436728	110436728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	51	334	0	ENST00000375856.3:c.1673G>C	p.Arg558Pro	p.R558P	ENST00000375856	NM_003749.2	558	cGg/cCg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026652	6026653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	61	837	1	ENST00000265849.7:c.1743dup	p.Glu582ArgfsTer8	p.E582Rfs*8	ENST00000265849	NM_000535.5	581	-/A																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841443	156841443	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	63	542	0	ENST00000524377.1:c.746T>A	p.Leu249Gln	p.L249Q	ENST00000524377	NM_002529.3	249	cTg/cAg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154831	2154831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	93	746	1	ENST00000434045.2:c.390C>A	p.Ser130Arg	p.S130R	ENST00000434045	NM_001127598.1	130	agC/agA																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625434	69625434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	89	716	1	ENST00000334134.2:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000334134	NM_005247.2	120	cGg/cAg																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125507408	125507408	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	53	544	0	ENST00000428830.2:c.783A>C	p.Lys261Asn	p.K261N	ENST00000428830	NM_001114121.2	261	aaA/aaC																																																																														
POLE	5426	MSKCC	GRCh37	12	133235954	133235954	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	75	563	0	ENST00000320574.5:c.3202A>T	p.Met1068Leu	p.M1068L	ENST00000320574	NM_006231.2	1068	Atg/Ttg																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281900	49281900	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	55	538	0	ENST00000282018.3:c.947T>C	p.Leu316Pro	p.L316P	ENST00000282018	NM_020377.2	316	cTa/cCa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524586	103524587	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	27	322	0	ENST00000355739.4:c.2717_2718delinsTT	p.Arg906Ile	p.R906I	ENST00000355739	NM_000123.3	906	aGA/aTT																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221212	5221212	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	68	679	0	ENST00000357368.4:c.3254T>A	p.Leu1085His	p.L1085H	ENST00000357368	NM_002850.3	1085	cTc/cAc																																																																														
SESN1	27244	MSKCC	GRCh37	6	109312026	109312026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	113	625	0	ENST00000436639.2:c.1246G>A	p.Glu416Lys	p.E416K	ENST00000436639	NM_014454.2	416	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725470	117725470	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	29	515	0	ENST00000368508.3:c.411A>C	p.Gln137His	p.Q137H	ENST00000368508	NM_002944.2	137	caA/caC																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194626	29194626	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	89	706	0	ENST00000240100.2:c.1102T>G	p.Phe368Val	p.F368V	ENST00000240100	NM_001394.6	368	Ttt/Gtt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370937	55370937	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	54	684	2	ENST00000297316.4:c.239A>C	p.Lys80Thr	p.K80T	ENST00000297316	NM_022454.3	80	aAg/aCg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981555	70981555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	77	861	1	ENST00000276594.2:c.541G>T	p.Gly181Cys	p.G181C	ENST00000276594	NM_024504.3	181	Ggt/Tgt																																																																														
ABL1	25	MSKCC	GRCh37	9	133730271	133730271	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	73	569	0	ENST00000318560.5:c.337A>C	p.Ser113Arg	p.S113R	ENST00000318560	NM_005157.4	113	Agc/Cgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139411756	139411756	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	61	718	1	ENST00000277541.6:c.1523A>T	p.Lys508Met	p.K508M	ENST00000277541	NM_017617.3	508	aAg/aTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76944312	76944312	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0028304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	40	481	0	ENST00000373344.5:c.593A>G	p.Lys198Arg	p.K198R	ENST00000373344	NM_000489.3	198	aAg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	141	535	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778389	3778389	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	71	459	0	ENST00000262367.5:c.6659del	p.Gly2220AlafsTer82	p.G2220Afs*82	ENST00000262367	NM_004380.2	2220	gGc/gc																																																																														
RARA	5914	MSKCC	GRCh37	17	38487604	38487604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	67	465	0	ENST00000254066.5:c.134A>G	p.Gln45Arg	p.Q45R	ENST00000254066	NM_000964.3	45	cAg/cGg																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182049	38182049	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	180	346	0	ENST00000396334.3:c.673A>T	p.Ile225Phe	p.I225F	ENST00000396334	NM_002468.4	225	Atc/Ttc																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0028383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	302	643	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	388	776	1	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653780	89653781	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0028383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	58	333	0	ENST00000371953.3:c.80-1_80del		p.X27_splice	ENST00000371953	NM_000314.4	27																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	93	404	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171593	36171596	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CTTA	CTTA	-			P-0028463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	31	188	0	ENST00000300305.3:c.967+2_967+5del		p.X323_splice	ENST00000300305		323																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936104	178936104	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	108	481	0	ENST00000263967.3:c.1646A>T	p.Asp549Val	p.D549V	ENST00000263967	NM_006218.2	549	gAt/gTt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38966790	38966790	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145165444		P-0028463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	48	213	0	ENST00000357387.3:c.1252C>T	p.His418Tyr	p.H418Y	ENST00000357387	NM_152756.3	418	Cat/Tat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69058446	69058446	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	90	295	0	ENST00000288368.4:c.4090G>T	p.Val1364Phe	p.V1364F	ENST00000288368	NM_024870.2	1364	Gtt/Ttt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274636	123274636	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	18	276	0	ENST00000358487.5:c.1282del	p.Val428Ter	p.V428*	ENST00000358487	NM_000141.4	428	Gta/ta																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589546	69589546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	144	173	0	ENST00000168712.1:c.307C>A	p.Arg103Ser	p.R103S	ENST00000168712	NM_002007.2	103	Cgc/Agc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138294	2138294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	318	638	0	ENST00000219476.3:c.5227C>T	p.Arg1743Trp	p.R1743W	ENST00000219476	NM_000548.3	1743	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	375	443	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	140	248	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913357		P-0028481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	114	311	0	ENST00000288602.6:c.1405G>A	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Aga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5238951	5238951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	305	381	0	ENST00000357368.4:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000357368	NM_002850.3	610	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108235920	108235920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	161	403	0	ENST00000278616.4:c.8962G>T	p.Asp2988Tyr	p.D2988Y	ENST00000278616	NM_000051.3	2988	Gac/Tac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3795351	3795351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	299	356	0	ENST00000262367.5:c.3841G>T	p.Val1281Phe	p.V1281F	ENST00000262367	NM_004380.2	1281	Gtt/Ttt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120114	70120115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGTGC			P-0028481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	81	120	0	ENST00000245479.2:c.1117_1118insGTGCC	p.Pro373ArgfsTer12	p.P373Rfs*12	ENST00000245479	NM_000346.3	372	-/CGTGC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575077	48575077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	117	317	0	ENST00000342988.3:c.271C>A	p.Pro91Thr	p.P91T	ENST00000342988	NM_005359.5	91	Cct/Act																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210419	36210419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	434	464	0	ENST00000222270.7:c.412C>T	p.Arg138Cys	p.R138C	ENST00000222270	NM_014727.1	138	Cgc/Tgc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719655	190719655	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	44	235	0	ENST00000441310.2:c.1657A>C	p.Ile553Leu	p.I553L	ENST00000441310	NM_000534.4	553	Ata/Cta																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0028493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	73	561	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109924	115109924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	45	574	2	ENST00000257566.3:c.1954G>A	p.Gly652Ser	p.G652S	ENST00000257566	NM_016569.3	652	Ggc/Agc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11168978	11168978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	46	707	0	ENST00000344626.4:c.4472G>A	p.Arg1491Gln	p.R1491Q	ENST00000344626	NM_003072.3	1491	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	193	746	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933305	39933305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	46	715	0	ENST00000378444.4:c.1294G>A	p.Val432Ile	p.V432I	ENST00000378444	NM_001123385.1	432	Gtt/Att																																																																														
MPL	4352	MSKCC	GRCh37	1	43812567	43812567	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028509-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			138	325	461	0	ENST00000372470.3:c.1270C>T	p.Gln424Ter	p.Q424*	ENST00000372470	NM_005373.2	424	Caa/Taa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134267	2134268	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0028509-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			161	422	702	0	ENST00000219476.3:c.4046_4047del	p.Ala1349GlyfsTer64	p.A1349Gfs*64	ENST00000219476	NM_000548.3	1348	caCGcg/cacg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266736	18266736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028509-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	390	577	0	ENST00000222254.8:c.47G>A	p.Arg16His	p.R16H	ENST00000222254	NM_005027.3	16	cGc/cAc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120795695	120795695	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	14	444	0	ENST00000257552.2:c.458G>C	p.Gly153Ala	p.G153A	ENST00000257552	NM_002442.3	153	gGg/gCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	76	560	2	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482864	67482864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	136	473	1	ENST00000327367.4:c.1268G>A	p.Ser423Asn	p.S423N	ENST00000327367	NM_005902.3	423	aGt/aAt																																																																														
APC	324	MSKCC	GRCh37	5	112175488	112175488	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	121	415	0	ENST00000257430.4:c.4198del	p.Ser1400ArgfsTer15	p.S1400Rfs*15	ENST00000257430	NM_000038.5	1399	cgT/cg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395739	45395739	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	54	448	0	ENST00000262160.6:c.395G>A	p.Trp132Ter	p.W132*	ENST00000262160	NM_005901.5	132	tGg/tAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939908	76939910	+	missense_variant	Missense_Mutation	ONP	ACA	ACA	CAT			P-0028604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	73	279	0	ENST00000373344.5:c.838_840delinsATG	p.Cys280Met	p.C280M	ENST00000373344	NM_000489.3	280	TGT/ATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	79	552	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	90	217	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	230	396	0	ENST00000256078.4:c.99T>G	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	52	186	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	52	186	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577589	7577590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	149	510	0	ENST00000269305.4:c.691dup	p.Thr231AsnfsTer9	p.T231Nfs*9	ENST00000269305	NM_001126112.2	231	acc/aAcc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900995	114900995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	93	518	0	ENST00000543371.1:c.605C>T	p.Pro202Leu	p.P202L	ENST00000543371	NM_001198531.1	202	cCt/cTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916954	178916956	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0028872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	188	331	0	ENST00000263967.3:c.341_343delATC	p.Asn114del	p.N114del	ENST00000263967	NM_006218.2	114	aATCga/aga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47155389	47155389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	127	468	0	ENST00000409792.3:c.4692G>C	p.Leu1564Phe	p.L1564F	ENST00000409792	NM_014159.6	1564	ttG/ttC																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	19	491	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
KDR	3791	MSKCC	GRCh37	4	55964865	55964865	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	19	351	2	ENST00000263923.4:c.2372G>A	p.Arg791Gln	p.R791Q	ENST00000263923	NM_002253.2	791	cGg/cAg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610450	81610450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	28	463	0	ENST00000298171.2:c.2048A>G	p.Lys683Arg	p.K683R	ENST00000298171	NM_000369.2	683	aAg/aGg																																																																														
INSR	3643	MSKCC	GRCh37	19	7166333	7166333	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	32	745	0	ENST00000302850.5:c.1693del	p.Leu565Ter	p.L565*	ENST00000302850	NM_000208.2	565	Ctg/tg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	143	520	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0028973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	137	540	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534788	18534788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	197	554	0	ENST00000266497.5:c.1846A>C	p.Ser616Arg	p.S616R	ENST00000266497		616	Agt/Cgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	158	458	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445005	89445005	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112239794		P-0028973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	157	526	0	ENST00000336596.2:c.1325C>T	p.Thr442Met	p.T442M	ENST00000336596	NM_005233.5	442	aCg/aTg																																																																														
SETD8	387893	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0028973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	11	33	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575122	64575122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	244	630	0	ENST00000337652.1:c.700C>T	p.Arg234Cys	p.R234C	ENST00000337652	NM_130803.2	234	Cgc/Tgc																																																																														
B2M	567	MSKCC	GRCh37	15	45003780	45003781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0028973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	153	392	0	ENST00000558401.1:c.37_38insCC	p.Leu13ProfsTer32	p.L13Pfs*32	ENST00000558401	NM_004048.2	12	-/CC																																																																														
CD79B	974	MSKCC	GRCh37	17	62008694	62008694	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0028973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	207	620	1	ENST00000392795.3:c.121+1G>A		p.X41_splice	ENST00000392795	NM_001039933.1	41																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45374849	45374850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0028973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	171	558	0	ENST00000262160.6:c.993_994insTA	p.Ile332Ter	p.I332*	ENST00000262160	NM_005901.5	331	-/TA																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626969	14626969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	267	811	0	ENST00000254322.2:c.806G>T	p.Cys269Phe	p.C269F	ENST00000254322	NM_006145.1	269	tGc/tTc																																																																														
RHOA	387	MSKCC	GRCh37	3	49397664	49397664	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	188	497	0	ENST00000418115.1:c.560A>T	p.Lys187Ile	p.K187I	ENST00000418115	NM_001664.2	187	aAa/aTa																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	63	546	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967350	134967350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs61736108		P-0028990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	61	438	1	ENST00000398015.3:c.2689G>A	p.Val897Met	p.V897M	ENST00000398015	NM_004441.4	897	Gtg/Atg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	25	331	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0028990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	42	551	0	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844179	156844181	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0028990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	48	701	0	ENST00000524377.1:c.1184_1186del	p.Phe395del	p.F395del	ENST00000524377	NM_002529.3	394	tcCTTc/tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428026	49428026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	71	535	0	ENST00000301067.7:c.10564C>T	p.Gln3522Ter	p.Q3522*	ENST00000301067	NM_003482.3	3522	Cag/Tag																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473696	67473696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	64	541	1	ENST00000327367.4:c.776G>A	p.Gly259Asp	p.G259D	ENST00000327367	NM_005902.3	259	gGc/gAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63545729	63545732	+	frameshift_variant	Frame_Shift_Del	DEL	AGCC	AGCC	-			P-0028990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	136	514	1	ENST00000307078.5:c.862_865del	p.Gly288MetfsTer19	p.G288Mfs*19	ENST00000307078	NM_004655.3	288	GGCTat/at																																																																														
APC	324	MSKCC	GRCh37	5	112174101	112174268	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	TCACTAAGTCGGAAAATTCAAATAGGACATGTTCTATGCCTTATGCCAAATTAGAATACAAGAGATCTTCAAATGATAGTTTAAATAGTGTCAGTAGTAGTGATGGTTATGGTAAAAGAGGTCAAATGAAACCCTCGATTGAATCCTATTCTGAAGATGATGAAAGTA	TCACTAAGTCGGAAAATTCAAATAGGACATGTTCTATGCCTTATGCCAAATTAGAATACAAGAGATCTTCAAATGATAGTTTAAATAGTGTCAGTAGTAGTGATGGTTATGGTAAAAGAGGTCAAATGAAACCCTCGATTGAATCCTATTCTGAAGATGATGAAAGTA	-			P-0028990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	25	333	0	ENST00000257430.4:c.2810_2977del	p.Phe937_Lys993delinsTer	p.F937_K993delins*	ENST00000257430	NM_000038.5	937	tTCACTAAGTCGGAAAATTCAAATAGGACATGTTCTATGCCTTATGCCAAATTAGAATACAAGAGATCTTCAAATGATAGTTTAAATAGTGTCAGTAGTAGTGATGGTTATGGTAAAAGAGGTCAAATGAAACCCTCGATTGAATCCTATTCTGAAGATGATGAAAGTAag/tag																																																																														
APC	324	MSKCC	GRCh37	5	112175621	112175622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	39	398	0	ENST00000257430.4:c.4333dup	p.Thr1445AsnfsTer10	p.T1445Nfs*10	ENST00000257430	NM_000038.5	1444	caa/cAaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522188	157522188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	53	525	1	ENST00000346085.5:c.4460C>T	p.Ala1487Val	p.A1487V	ENST00000346085	NM_020732.3	1487	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	291	688	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061093	38061102	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGAGGGGT	CCAGAGGGGT	-			P-0029163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	18	123	0	ENST00000250448.2:c.887_896del	p.Asp296AlafsTer22	p.D296Afs*22	ENST00000250448	NM_004496.3	296	gACCCCTCTGGc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	248	471	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	193	774	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540790	187540793	+	missense_variant	Missense_Mutation	ONP	CCTC	CCTC	TCTT			P-0029377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	56	329	0	ENST00000441802.2:c.6947_6950delinsAAGA	p.Arg2316_Gly2317delinsLysGlu	p.R2316_G2317delinsKE	ENST00000441802	NM_005245.3	2316	aGAGGa/aAAGAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140439695	140439695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	68	404	0	ENST00000288602.6:c.2044C>T	p.Arg682Trp	p.R682W	ENST00000288602	NM_004333.4	682	Cgg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52595821	52595821	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	46	531	0	ENST00000394830.3:c.4094G>A	p.Trp1365Ter	p.W1365*	ENST00000394830	NM_018313.4	1365	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	239	681	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0029385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	146	540	1				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112175786	112175786	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	46	275	1	ENST00000257430.4:c.4495G>T	p.Gly1499Ter	p.G1499*	ENST00000257430	NM_000038.5	1499	Gga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489566	56489566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	182	485	0	ENST00000267101.3:c.2031G>A	p.Met677Ile	p.M677I	ENST00000267101	NM_001982.3	677	atG/atA																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246051	46246051	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	170	392	0	ENST00000334344.6:c.4146del	p.Asn1383IlefsTer3	p.N1383Ifs*3	ENST00000334344	NM_152641.2	1382	tCc/tc																																																																														
RB1	5925	MSKCC	GRCh37	13	49037972	49037972	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0029385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	335	448	0	ENST00000267163.4:c.2211+1G>C		p.X737_splice	ENST00000267163	NM_000321.2	737																																																																															
MST1R	4486	MSKCC	GRCh37	3	49934035	49934035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	191	711	0	ENST00000296474.3:c.2377C>G	p.Leu793Val	p.L793V	ENST00000296474	NM_002447.2	793	Cta/Gta																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467856	50467856	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	137	402	0	ENST00000331340.3:c.1091C>G	p.Ser364Trp	p.S364W	ENST00000331340	NM_006060.4	364	tCg/tGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	421	594	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	321	467	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	660	769	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	583	610	1	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174458	11174458	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	417	617	0	ENST00000361445.4:c.7217T>C	p.Val2406Ala	p.V2406A	ENST00000361445	NM_004958.3	2406	gTg/gCg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326285	62326285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	550	769	2	ENST00000508582.2:c.3373G>A	p.Ala1125Thr	p.A1125T	ENST00000508582		1125	Gcc/Acc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41265746	41266234	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAA	CAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAA	-			P-0029388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	32	44	0	ENST00000349496.5:c.13+176_233del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	746	751	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175351	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0029454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	294	266	0	ENST00000257430.4:c.4062_4063del	p.Ser1355PhefsTer19	p.S1355Ffs*19	ENST00000257430	NM_000038.5	1354	TTt/t																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981540	201981540	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	726	832	2	ENST00000359651.3:c.454G>T	p.Glu152Ter	p.E152*	ENST00000359651		152	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7572928	7572929	+	frameshift_variant,stop_lost	Frame_Shift_Ins	INS	-	-	A			P-0029454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	240	550	0	ENST00000269305.4:c.1180dup	p.Ter394LeufsTer77	p.*394Lfs*77	ENST00000269305	NM_001126112.2	394	tga/tTga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	219	451	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	71	254	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0029807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	138	370	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	125	424	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430936	181430936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	314	672	0	ENST00000325404.1:c.788C>T	p.Ala263Val	p.A263V	ENST00000325404	NM_003106.3	263	gCg/gTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779102	135779102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	206	400	0	ENST00000298552.3:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000298552	NM_001162426.1	715	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71936191	71936191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	93	466	0	ENST00000298229.2:c.163G>C	p.Ala55Pro	p.A55P	ENST00000298229	NM_001567.3	55	Gcc/Ccc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514496	149514496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs199522807		P-0029811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	131	485	0	ENST00000261799.4:c.448C>T	p.Arg150Ter	p.R150*	ENST00000261799	NM_002609.3	150	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	95	404	0	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536713	120536713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	112	578	1	ENST00000229340.5:c.379C>T	p.Arg127Trp	p.R127W	ENST00000229340	NM_006861.6	127	Cgg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303266	15303266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	158	791	0	ENST00000263388.2:c.262G>A	p.Ala88Thr	p.A88T	ENST00000263388	NM_000435.2	88	Gct/Act																																																																														
EP300	2033	MSKCC	GRCh37	22	41553159	41553180	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTGTCTTTCTAGGATTACTT	ACTTGTCTTTCTAGGATTACTT	-			P-0029815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	130	261	0	ENST00000263253.7:c.3262-14_3269del		p.X1088_splice	ENST00000263253	NM_001429.3	1088																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060992	38061010	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGCTGGCGGCGGGCCC	GGGGGCTGGCGGCGGGCCC	-			P-0029875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	45	271	0	ENST00000250448.2:c.979_997del	p.Gly327ArgfsTer17	p.G327Rfs*17	ENST00000250448	NM_004496.3	327	GGGCCCGCCGCCAGCCCCCag/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	53	459	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0030006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	24	440	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920447	114920447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	34	413	0	ENST00000543371.1:c.1388G>T	p.Cys463Phe	p.C463F	ENST00000543371	NM_001198531.1	463	tGc/tTc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252991	36252992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATCC			P-0030006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	37	363	0	ENST00000300305.3:c.366_370dup	p.Val124GlyfsTer11	p.V124Gfs*11	ENST00000300305		124	gtt/gGGATGtt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56183254	56183254	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	28	473	0	ENST00000399503.3:c.4164T>A	p.Asp1388Glu	p.D1388E	ENST00000399503	NM_005921.1	1388	gaT/gaA																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	26	463	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384746	84384747	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	11	252	1	ENST00000321945.7:c.696dup	p.Val233SerfsTer5	p.V233Sfs*5	ENST00000321945	NM_139076.2	232	-/A																																																																														
POLE	5426	MSKCC	GRCh37	12	133209062	133209062	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	73	404	0	ENST00000320574.5:c.6169A>C	p.Asn2057His	p.N2057H	ENST00000320574	NM_006231.2	2057	Aat/Cat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165290	47165290	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	34	350	1	ENST00000409792.3:c.836C>A	p.Ser279Ter	p.S279*	ENST00000409792	NM_014159.6	279	tCa/tAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53254020	53254020	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	17	243	1	ENST00000375401.3:c.52G>T	p.Glu18Ter	p.E18*	ENST00000375401	NM_004187.3	18	Gag/Tag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228274	53228282	+	inframe_deletion	In_Frame_Del	DEL	ACTTGATAC	ACTTGATAC	-			P-0030030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	26	313	0	ENST00000375401.3:c.2121_2129del	p.Ile708_Cys710del	p.I708_C710del	ENST00000375401	NM_004187.3	707	tGTATCAAGTgc/tgc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149503838	149503838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	329	465	0	ENST00000261799.4:c.1998C>A	p.Asn666Lys	p.N666K	ENST00000261799	NM_002609.3	666	aaC/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	319	459	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag																																																																														
RB1	5925	MSKCC	GRCh37	13	48953785	48953785	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0030045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			92	130	216	0	ENST00000267163.4:c.1388C>G	p.Ser463Ter	p.S463*	ENST00000267163	NM_000321.2	463	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577590	7577590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	159	512	0	ENST00000269305.4:c.691A>G	p.Thr231Ala	p.T231A	ENST00000269305	NM_001126112.2	231	Acc/Gcc																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872626	136872626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	26	379	0	ENST00000241393.3:c.872C>A	p.Ala291Asp	p.A291D	ENST00000241393	NM_003467.2	291	gCt/gAt																																																																														
LYN	4067	MSKCC	GRCh37	8	56854492	56854492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	225	386	0	ENST00000519728.1:c.74G>C	p.Arg25Pro	p.R25P	ENST00000519728	NM_002350.3	25	cGt/cCt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0030216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	42	398	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	67	234	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	141	557	0	ENST00000269305.4:c.587G>C	p.Arg196Pro	p.R196P	ENST00000269305	NM_001126112.2	196	cGa/cCa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64128047	64128047	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	145	633	0	ENST00000334205.4:c.445C>G	p.Leu149Val	p.L149V	ENST00000334205	NM_003942.2	149	Ctg/Gtg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420841	49420841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	44	563	0	ENST00000301067.7:c.14908G>A	p.Glu4970Lys	p.E4970K	ENST00000301067	NM_003482.3	4970	Gaa/Aaa																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139818399	139818399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	83	606	0	ENST00000247668.2:c.1234G>A	p.Val412Met	p.V412M	ENST00000247668	NM_021138.3	412	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0030254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	881	501	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
REL	5966	MSKCC	GRCh37	2	61145657	61145657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	271	518	0	ENST00000295025.8:c.769G>A	p.Val257Ile	p.V257I	ENST00000295025	NM_002908.2	257	Gta/Ata																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944243	81944243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1449	175	532	1	ENST00000359376.3:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000359376	NM_002661.3	618	Cgc/Tgc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143033725	143033725	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	198	412	0	ENST00000262992.4:c.2246G>C	p.Gly749Ala	p.G749A	ENST00000262992	NM_001101669.1	749	gGa/gCa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9525080	9525080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	51	462	1	ENST00000353224.5:c.1805C>T	p.Ser602Leu	p.S602L	ENST00000353224	NM_177990.2	602	tCa/tTa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30323835	30323835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	132	277	0	ENST00000322652.5:c.1813G>C	p.Asp605His	p.D605H	ENST00000322652	NM_015355.2	605	Gat/Cat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883101	37883101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	147	584	0	ENST00000269571.5:c.3004A>T	p.Ser1002Cys	p.S1002C	ENST00000269571		1002	Agc/Tgc																																																																														
AXL	558	MSKCC	GRCh37	19	41744465	41744465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	169	509	1	ENST00000301178.4:c.1085G>T	p.Gly362Val	p.G362V	ENST00000301178	NM_021913.4	362	gGt/gTt																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319400	62319401	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GA	GA	CT			P-0030254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1480	119	548	2	ENST00000508582.2:c.1664_1665delinsCT	p.Arg555Thr	p.R555T	ENST00000508582		555	aGA/aCT																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121248	29121248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	309	628	0	ENST00000328354.6:c.427C>G	p.His143Asp	p.H143D	ENST00000328354	NM_007194.3	143	Cac/Gac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295310	1295310	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0030254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	152	371	2				ENST00000310581	NM_198253.2																																																																																
MDC1	9656	MSKCC	GRCh37	6	30679912	30679912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	166	260	0	ENST00000376406.3:c.1807G>A	p.Glu603Lys	p.E603K	ENST00000376406	NM_014641.2	603	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	193	236	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	283	410	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061333	38061333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	300	494	0	ENST00000250448.2:c.656G>A	p.Arg219His	p.R219H	ENST00000250448	NM_004496.3	219	cGc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628403	187628403	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	310	539	0	ENST00000441802.2:c.2579C>G	p.Ser860Ter	p.S860*	ENST00000441802	NM_005245.3	860	tCa/tGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151902229	151902229	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	160	431	0	ENST00000262189.6:c.3923C>G	p.Ser1308Ter	p.S1308*	ENST00000262189	NM_170606.2	1308	tCa/tGa																																																																														
ATM	472	MSKCC	GRCh37	11	108236097	108236097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	213	497	1	ENST00000278616.4:c.9033G>A	p.Met3011Ile	p.M3011I	ENST00000278616	NM_000051.3	3011	atG/atA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445302	49445302	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	411	684	1	ENST00000301067.7:c.2164G>T	p.Glu722Ter	p.E722*	ENST00000301067	NM_003482.3	722	Gag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133257206	133257206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	210	398	0	ENST00000320574.5:c.272G>A	p.Gly91Glu	p.G91E	ENST00000320574	NM_006231.2	91	gGa/gAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28979985	28979985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	173	534	0	ENST00000282397.4:c.1483G>A	p.Asp495Asn	p.D495N	ENST00000282397	NM_002019.4	495	Gac/Aac																																																																														
MGA	23269	MSKCC	GRCh37	15	42035073	42035073	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	300	556	0	ENST00000219905.7:c.4915G>C	p.Glu1639Gln	p.E1639Q	ENST00000219905	NM_001164273.1	1639	Gag/Cag																																																																														
IDH2	3418	MSKCC	GRCh37	15	90645531	90645531	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	53	46	0	ENST00000330062.3:c.92C>A	p.Ser31Ter	p.S31*	ENST00000330062	NM_002168.2	31	tCg/tAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778807	3778807	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	363	573	0	ENST00000262367.5:c.6241C>T	p.Gln2081Ter	p.Q2081*	ENST00000262367	NM_004380.2	2081	Cag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857494	9857494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	156	336	0	ENST00000330684.3:c.3907G>C	p.Asp1303His	p.D1303H	ENST00000330684	NM_001134407.1	1303	Gac/Cac																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11169506	11169512	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GAGAAGG	GAGAAGG	TAAAGA			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	347	533	2	ENST00000344626.4:c.4576_4582delinsTAAAGA	p.Glu1526Ter	p.E1526*	ENST00000344626	NM_003072.3	1526	GAGAAGGac/TAAAGAac																																																																														
CIC	23152	MSKCC	GRCh37	19	42795787	42795787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	308	513	0	ENST00000575354.2:c.2776C>G	p.Leu926Val	p.L926V	ENST00000575354	NM_015125.3	926	Ctg/Gtg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244080	153244080	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	254	387	0	ENST00000281708.4:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000281708	NM_033632.3	693	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592047	67592047	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	117	247	0	ENST00000274335.5:c.1863G>C	p.Glu621Asp	p.E621D	ENST00000274335		621	gaG/gaC																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592111	67592111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	129	263	0	ENST00000274335.5:c.1927G>C	p.Asp643His	p.D643H	ENST00000274335		643	Gat/Cat																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674318	86674318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	109	354	0	ENST00000274376.6:c.2450C>G	p.Ser817Cys	p.S817C	ENST00000274376	NM_002890.2	817	tCt/tGt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652178	36652196	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGCTGCAGGGGACAGCA	TCTGCTGCAGGGGACAGCA	AG			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	273	382	2	ENST00000244741.5:c.300_318delinsAG	p.Leu101GlyfsTer22	p.L101Gfs*22	ENST00000244741	NM_000389.4	100	gcTCTGCTGCAGGGGACAGCA/gcAG																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039829	47039829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	373	292	0	ENST00000329236.7:c.938C>T	p.Ser313Phe	p.S313F	ENST00000329236	NM_001204466.1	313	tCc/tTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045656	47045656	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	301	211	0	ENST00000329236.7:c.2304-1G>A		p.X768_splice	ENST00000329236	NM_001204466.1	768																																																																															
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	122	608	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																														
RAD51	5888	MSKCC	GRCh37	15	41022087	41022087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	61	537	0	ENST00000267868.3:c.811G>A	p.Ala271Thr	p.A271T	ENST00000267868	NM_002875.4	271	Gct/Act																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098790	178098806	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGAGAAATTCACCTG	TGGGAGAAATTCACCTG	-			P-0030335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	90	531	0	ENST00000397062.3:c.239_255del	p.Thr80AsnfsTer32	p.T80Nfs*32	ENST00000397062	NM_006164.4	80	aCAGGTGAATTTCTCCCA/a																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49430952	49430952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	138	409	0	ENST00000301067.7:c.10187del	p.Leu3396TrpfsTer37	p.L3396Wfs*37	ENST00000301067	NM_003482.3	3396	tTg/tg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827929	72827930	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0030474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	204	666	0	ENST00000268489.5:c.8651_8652insGT	p.Glu2885LeufsTer70	p.E2885Lfs*70	ENST00000268489	NM_006885.3	2884	tct/tcGTt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976373	18976373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	65	764	0	ENST00000262803.5:c.3023G>A	p.Arg1008Gln	p.R1008Q	ENST00000262803	NM_002911.3	1008	cGa/cAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670727	134670727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	63	461	0	ENST00000398015.3:c.638C>T	p.Ala213Val	p.A213V	ENST00000398015	NM_004441.4	213	gCa/gTa																																																																														
ATM	472	MSKCC	GRCh37	11	108098391	108098391	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	117	270	0	ENST00000278616.4:c.40C>T	p.Gln14Ter	p.Q14*	ENST00000278616	NM_000051.3	14	Caa/Taa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99452006	99452006	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	127	370	0	ENST00000268035.6:c.1340A>T	p.Tyr447Phe	p.Y447F	ENST00000268035	NM_000875.3	447	tAc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	150	461	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
VHL	7428	MSKCC	GRCh37	3	10183857	10183857	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	130	366	0	ENST00000256474.2:c.326del	p.Ile109ThrfsTer50	p.I109Tfs*50	ENST00000256474	NM_000551.3	109	aTc/ac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47143038	47143038	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	151	334	0	ENST00000409792.3:c.4925T>A	p.Val1642Glu	p.V1642E	ENST00000409792	NM_014159.6	1642	gTg/gAg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623115	52623115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	127	355	0	ENST00000394830.3:c.2936G>A	p.Cys979Tyr	p.C979Y	ENST00000394830	NM_018313.4	979	tGt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	102	701	2	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186506972	186506972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	91	335	0	ENST00000323963.5:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000323963		380	Gaa/Aaa																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736492	85736492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	66	406	0	ENST00000370580.1:c.155C>A	p.Thr52Asn	p.T52N	ENST00000370580	NM_003921.4	52	aCt/aAt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617708	39617708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	42	497	0	ENST00000262039.4:c.1892A>G	p.Tyr631Cys	p.Y631C	ENST00000262039	NM_002647.2	631	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0030777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	365	474	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038811	47038811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	180	606	0	ENST00000329236.7:c.587C>T	p.Pro196Leu	p.P196L	ENST00000329236	NM_001204466.1	196	cCg/cTg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805538	46805538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	589	618	2	ENST00000290295.7:c.418A>G	p.Met140Val	p.M140V	ENST00000290295	NM_006361.5	140	Atg/Gtg																																																																														
KDR	3791	MSKCC	GRCh37	4	55971030	55971030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	118	420	0	ENST00000263923.4:c.1767G>T	p.Gln589His	p.Q589H	ENST00000263923	NM_002253.2	589	caG/caT																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	328	686	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	107	561	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274849	38274849	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779707422		P-0030831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	163	506	0	ENST00000425967.3:c.1731C>A	p.Asn577Lys	p.N577K	ENST00000425967	NM_001174067.1	577	aaC/aaA																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980344	201980350	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCTGT	CCTCTGT	-			P-0030831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	818	830	0	ENST00000359651.3:c.80_86del	p.Ala27ValfsTer14	p.A27Vfs*14	ENST00000359651		27	gCCTCTGTt/gt																																																																														
SETD8	387893	MSKCC	GRCh37	12	123874021	123874021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6	72	31	0	ENST00000330479.4:c.52G>A	p.Ala18Thr	p.A18T	ENST00000330479	NM_020382.3	18	Gcg/Acg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914923	32914923	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	86	486	0	ENST00000380152.3:c.6434del	p.Asn2145IlefsTer23	p.N2145Ifs*23	ENST00000380152		2144	gAa/ga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061280	38061281	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTCCGGGGAGCGTGCCACCTTGACGAAGCA			P-0030831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	266	705	0	ENST00000250448.2:c.679_708dup	p.Cys227_Asp236dup	p.C227_D236dup	ENST00000250448	NM_004496.3	227	-/TGCTTCGTCAAGGTGGCACGCTCCCCGGAC																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763475	59763478	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0030831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	116	541	0	ENST00000259008.2:c.2624_2627del	p.Glu875ValfsTer21	p.E875Vfs*21	ENST00000259008	NM_032043.2	875	gAAAGt/gt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033653	48033653	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	138	516	0	ENST00000234420.5:c.3864A>C	p.Lys1288Asn	p.K1288N	ENST00000234420	NM_000179.2	1288	aaA/aaC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125644	47125644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	139	419	0	ENST00000409792.3:c.5626C>A	p.Leu1876Ile	p.L1876I	ENST00000409792	NM_014159.6	1876	Cta/Ata																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674163	117674163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	168	546	0	ENST00000368508.3:c.4311G>T	p.Gln1437His	p.Q1437H	ENST00000368508	NM_002944.2	1437	caG/caT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709571	176709571	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	168	425	2	ENST00000439151.2:c.5998A>G	p.Thr2000Ala	p.T2000A	ENST00000439151	NM_022455.4	2000	Acc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	480	507	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20153856	20153857	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0030970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	196	371	0	ENST00000379607.5:c.203dup	p.Val69GlyfsTer19	p.V69Gfs*19	ENST00000379607	NM_001412.3	68	aag/aaAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972362	32972362	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	374	460	0	ENST00000380152.3:c.9712A>T	p.Lys3238Ter	p.K3238*	ENST00000380152		3238	Aag/Tag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888051	81888051	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0030970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	101	296	0	ENST00000359376.3:c.196G>C	p.Asp66His	p.D66H	ENST00000359376	NM_002661.3	66	Gat/Cat																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370213	40370213	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	150	599	0	ENST00000293328.3:c.1125T>A	p.Ser375Arg	p.S375R	ENST00000293328	NM_012448.3	375	agT/agA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748576	40748576	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0030970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	146	293	0	ENST00000373198.4:c.2940A>C	p.Gln980His	p.Q980H	ENST00000373198	NM_133170.3	980	caA/caC																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	15	461	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448518	49448518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	19	583	1	ENST00000301067.7:c.193C>T	p.Arg65Cys	p.R65C	ENST00000301067	NM_003482.3	65	Cgt/Tgt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891268	101891268	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	20	621	0	ENST00000374994.4:c.229T>G	p.Leu77Val	p.L77V	ENST00000374994	NM_004612.2	77	Tta/Gta																																																																														
BCOR	54880	MSKCC	GRCh37	X	39937139	39937139	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	25	741	0	ENST00000378444.4:c.44T>A	p.Met15Lys	p.M15K	ENST00000378444	NM_001123385.1	15	aTg/aAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410346	63410346	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	22	785	0	ENST00000330258.3:c.2821A>T	p.Ser941Cys	p.S941C	ENST00000330258	NM_152424.3	941	Agc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	90	516	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	38	150	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	105	335	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965472	68965472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200682883		P-0031045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	24	641	1	ENST00000288368.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000288368	NM_024870.2	362	Cgg/Tgg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982105	201982106	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	112	594	0	ENST00000359651.3:c.630dupA	p.Asp211ArgfsTer6	p.D211Rfs*6	ENST00000359651		210	tca/tcAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217304	66217304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	17	186	0	ENST00000273854.3:c.2311C>A	p.Gln771Lys	p.Q771K	ENST00000273854	NM_004439.5	771	Cag/Aag																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149433696	149433696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	10	533	0	ENST00000286301.3:c.2855C>A	p.Thr952Asn	p.T952N	ENST00000286301	NM_005211.3	952	aCc/aAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057857	27057857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			657	301	774	0	ENST00000324856.7:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000324856	NM_006015.4	522	cCa/cTa																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166091	118166091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			201	109	395	0	ENST00000369448.3:c.601C>T	p.Pro201Ser	p.P201S	ENST00000369448	NM_017709.3	201	Ccc/Tcc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458221	120458221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			426	191	576	0	ENST00000256646.2:c.7124C>T	p.Pro2375Leu	p.P2375L	ENST00000256646	NM_024408.3	2375	cCt/cTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458845	120458845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			436	178	712	1	ENST00000256646.2:c.6500C>T	p.Ser2167Phe	p.S2167F	ENST00000256646	NM_024408.3	2167	tCt/tTt																																																																														
TET1	80312	MSKCC	GRCh37	10	70451005	70451005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			333	289	585	0	ENST00000373644.4:c.5845C>T	p.Pro1949Ser	p.P1949S	ENST00000373644	NM_030625.2	1949	Cct/Tct																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123245022	123245022	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			329	114	395	2	ENST00000358487.5:c.2082G>A	p.Trp694Ter	p.W694*	ENST00000358487	NM_000141.4	694	tgG/tgA																																																																														
ATM	472	MSKCC	GRCh37	11	108200942	108200942	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			39	50	391	0	ENST00000278616.4:c.7309T>G	p.Tyr2437Asp	p.Y2437D	ENST00000278616	NM_000051.3	2437	Tac/Gac																																																																														
CCND2	894	MSKCC	GRCh37	12	4409088	4409089	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			220	109	332	0	ENST00000261254.3:c.783_784delinsTT	p.Arg262Cys	p.R262C	ENST00000261254	NM_001759.3	261	taCCgt/taTTgt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56494872	56494872	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112651994		P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			419	212	462	0	ENST00000267101.3:c.3229C>T	p.Arg1077Trp	p.R1077W	ENST00000267101	NM_001982.3	1077	Cgg/Tgg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32899288	32899288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			60	42	328	0	ENST00000380152.3:c.392C>T	p.Ser131Phe	p.S131F	ENST00000380152		131	tCc/tTc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134480	41134480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			176	194	581	0	ENST00000379561.5:c.1148C>T	p.Ser383Leu	p.S383L	ENST00000379561	NM_002015.3	383	tCa/tTa																																																																														
RB1	5925	MSKCC	GRCh37	13	48955535	48955550	+	frameshift_variant	Frame_Shift_Del	DEL	GAACGATGTGAACATC	GAACGATGTGAACATC	-			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			62	32	383	0	ENST00000267163.4:c.1654_1669del	p.Arg552SerfsTer54	p.R552Sfs*54	ENST00000267163	NM_000321.2	551	GAACGATGTGAACATCga/ga																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643248	38643248	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			46	68	407	0	ENST00000299084.4:c.718C>T	p.Gln240Ter	p.Q240*	ENST00000299084	NM_152594.2	240	Caa/Taa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858201	9858201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			334	121	570	1	ENST00000330684.3:c.3200G>A	p.Arg1067Gln	p.R1067Q	ENST00000330684	NM_001134407.1	1067	cGg/cAg																																																																														
CDH1	999	MSKCC	GRCh37	16	68849631	68849631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			321	139	546	0	ENST00000261769.5:c.1534G>A	p.Glu512Lys	p.E512K	ENST00000261769	NM_004360.3	512	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828150	72828150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	174	682	0	ENST00000268489.5:c.8431G>A	p.Glu2811Lys	p.E2811K	ENST00000268489	NM_006885.3	2811	Gaa/Aaa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347110	89347110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			289	142	472	0	ENST00000301030.4:c.5840C>T	p.Pro1947Leu	p.P1947L	ENST00000301030	NM_001256183.1	1947	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29422344	29422344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			343	212	423	0	ENST00000358273.4:c.17C>T	p.Pro6Leu	p.P6L	ENST00000358273	NM_001042492.2	6	cCg/cTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41251898	41251898	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			201	80	390	0	ENST00000357654.3:c.442-1G>A		p.X148_splice	ENST00000357654	NM_007294.3	148																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435533	56435533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			477	216	602	1	ENST00000407977.2:c.1604C>T	p.Ser535Leu	p.S535L	ENST00000407977		535	tCg/tTg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761264	59761264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			187	72	772	0	ENST00000259008.2:c.3143C>T	p.Pro1048Leu	p.P1048L	ENST00000259008	NM_032043.2	1048	cCc/cTc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59821921	59821921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			127	61	416	1	ENST00000259008.2:c.2129C>T	p.Ser710Phe	p.S710F	ENST00000259008	NM_032043.2	710	tCt/tTt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220920	36220920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			191	120	351	0	ENST00000222270.7:c.4970C>T	p.Ser1657Phe	p.S1657F	ENST00000222270	NM_014727.1	1657	tCc/tTc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383075	42383076	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			230	98	418	0	ENST00000221972.3:c.95_96delinsTT	p.Ala32Val	p.A32V	ENST00000221972	NM_021601.3	32	gCC/gTT																																																																														
ALK	238	MSKCC	GRCh37	2	29449836	29449836	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			652	348	976	0	ENST00000389048.3:c.3019T>A	p.Phe1007Ile	p.F1007I	ENST00000389048	NM_004304.4	1007	Ttc/Atc																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736159	204736160	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			298	107	474	1	ENST00000302823.3:c.516_517delinsAA	p.Gly173Arg	p.G173R	ENST00000302823	NM_005214.4	172	tcGGgg/tcAAgg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212252681	212252681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			49	34	171	0	ENST00000342788.4:c.3172C>T	p.Pro1058Ser	p.P1058S	ENST00000342788	NM_005235.2	1058	Ccc/Tcc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546683	9546683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			221	125	379	0	ENST00000353224.5:c.1339G>A	p.Glu447Lys	p.E447K	ENST00000353224	NM_177990.2	447	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40709548	40709548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			246	131	523	0	ENST00000373198.4:c.4354G>A	p.Val1452Met	p.V1452M	ENST00000373198	NM_133170.3	1452	Gtg/Atg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40709549	40709549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			247	131	525	0	ENST00000373198.4:c.4353G>T	p.Glu1451Asp	p.E1451D	ENST00000373198	NM_133170.3	1451	gaG/gaT																																																																														
RAF1	5894	MSKCC	GRCh37	3	12633229	12633229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			176	374	560	0	ENST00000251849.4:c.1171A>T	p.Arg391Trp	p.R391W	ENST00000251849	NM_002880.3	391	Agg/Tgg																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902755	1902755	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			307	134	586	0	ENST00000382891.5:c.374A>G	p.Lys125Arg	p.K125R	ENST00000382891	NM_133335.3	125	aAg/aGg																																																																														
KIT	3815	MSKCC	GRCh37	4	55604638	55604638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			413	179	548	0	ENST00000288135.5:c.2846C>T	p.Pro949Leu	p.P949L	ENST00000288135	NM_000222.2	949	cCc/cTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156493	106156493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			140	69	312	0	ENST00000380013.4:c.1394C>T	p.Pro465Leu	p.P465L	ENST00000380013	NM_001127208.2	465	cCa/cTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1268645	1268645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			587	208	599	0	ENST00000310581.5:c.2572C>T	p.Arg858Trp	p.R858W	ENST00000310581	NM_198253.2	858	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			264	210	238	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35873657	35873657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			153	45	305	0	ENST00000303115.3:c.613G>A	p.Val205Ile	p.V205I	ENST00000303115	NM_002185.3	205	Gtt/Att																																																																														
IL7R	3575	MSKCC	GRCh37	5	35875648	35875648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			177	143	380	0	ENST00000303115.3:c.835C>T	p.His279Tyr	p.H279Y	ENST00000303115	NM_002185.3	279	Cat/Tat																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924381	131924381	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			108	32	233	0	ENST00000265335.6:c.1054C>T	p.Arg352Cys	p.R352C	ENST00000265335		352	Cgt/Tgt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522582	176522582	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			670	219	681	0	ENST00000292408.4:c.1679A>T	p.Glu560Val	p.E560V	ENST00000292408	NM_213647.1	560	gAg/gTg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169869	32169869	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			695	224	649	0	ENST00000375023.3:c.3739A>G	p.Thr1247Ala	p.T1247A	ENST00000375023	NM_004557.3	1247	Acc/Gcc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547241	106547241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			98	98	332	0	ENST00000369096.4:c.478C>T	p.Arg160Cys	p.R160C	ENST00000369096	NM_001198.3	160	Cgc/Tgc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117641180	117641180	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			119	125	779	0	ENST00000368508.3:c.5791C>T	p.Gln1931Ter	p.Q1931*	ENST00000368508	NM_002944.2	1931	Caa/Taa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979457	2979457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			418	620	678	0	ENST00000396946.4:c.790G>A	p.Glu264Lys	p.E264K	ENST00000396946	NM_032415.4	264	Gag/Aag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987422	2987422	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			306	369	463	0	ENST00000396946.4:c.8-1G>A		p.X3_splice	ENST00000396946	NM_032415.4	3																																																																															
EZH2	2146	MSKCC	GRCh37	7	148514433	148514433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			59	196	508	1	ENST00000320356.2:c.1291C>T	p.Pro431Ser	p.P431S	ENST00000320356	NM_004456.4	431	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992794	68992794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			201	64	584	0	ENST00000288368.4:c.1759G>A	p.Glu587Lys	p.E587K	ENST00000288368	NM_024870.2	587	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995553	68995553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			264	73	702	0	ENST00000288368.4:c.1957G>A	p.Asp653Asn	p.D653N	ENST00000288368	NM_024870.2	653	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69069640	69069640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			156	57	454	0	ENST00000288368.4:c.4315G>A	p.Glu1439Lys	p.E1439K	ENST00000288368	NM_024870.2	1439	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69136794	69136794	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			167	130	373	0	ENST00000288368.4:c.4708G>A	p.Gly1570Arg	p.G1570R	ENST00000288368	NM_024870.2	1570	Gga/Aga																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964333	70964333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			315	113	326	0	ENST00000276594.2:c.1695G>A	p.Met565Ile	p.M565I	ENST00000276594	NM_024504.3	565	atG/atA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8497247	8497247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			34	22	246	0	ENST00000356435.5:c.2344G>A	p.Glu782Lys	p.E782K	ENST00000356435		782	Gaa/Aaa																																																																														
TEK	7010	MSKCC	GRCh37	9	27183567	27183567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			83	101	400	0	ENST00000380036.4:c.1141G>A	p.Glu381Lys	p.E381K	ENST00000380036	NM_000459.3	381	Gaa/Aaa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778168	135778168	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			150	176	585	1	ENST00000298552.3:c.2215C>T	p.Gln739Ter	p.Q739*	ENST00000298552	NM_001162426.1	739	Cag/Tag																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152860118	152860118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			76	235	309	0	ENST00000406277.2:c.310G>T	p.Glu104Ter	p.E104*	ENST00000406277	NM_152274.4	104	Gag/Tag																																																																														
CD79A	973	MSKCC	GRCh37	19	42383075	42383075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031286-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			230	98	408	0	ENST00000221972.3:c.95C>T	p.Ala32Val	p.A32V	ENST00000221972	NM_021601.3	32	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031309-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			131	71	549	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	142	667	1	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099423	27099424	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0031349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	324	527	2	ENST00000324856.7:c.3661_3662dup	p.Met1221IlefsTer17	p.M1221Ifs*17	ENST00000324856	NM_006015.4	1220	-/AT																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30102089	30102089	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	49	573	0	ENST00000331968.5:c.1378A>C	p.Ser460Arg	p.S460R	ENST00000331968	NM_002742.2	460	Agc/Cgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579563	7579566	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	-			P-0031349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	228	658	0	ENST00000269305.4:c.121_124del	p.Asp41IlefsTer2	p.D41Ifs*2	ENST00000269305	NM_001126112.2	41	GATGat/at																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158731	26158731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	84	436	0	ENST00000289316.2:c.334G>A	p.Val112Met	p.V112M	ENST00000289316	NM_138720.2	112	Gtg/Atg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031388-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	108	300	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031388-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	137	274	0				ENST00000310581	NM_198253.2																																																																																
INPPL1	3636	MSKCC	GRCh37	11	71944134	71944134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031388-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	224	454	0	ENST00000298229.2:c.1967C>T	p.Ser656Phe	p.S656F	ENST00000298229	NM_001567.3	656	tCc/tTc																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992152	11992152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031388-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	227	368	0	ENST00000396373.4:c.242C>T	p.Pro81Leu	p.P81L	ENST00000396373	NM_001987.4	81	cCa/cTa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79950724	79950725	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0031434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	152	208	1	ENST00000265081.6:c.178_179delinsAT	p.Ala60Ile	p.A60I	ENST00000265081	NM_002439.4	60	GCc/ATc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	110	467	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	101	327	0				ENST00000310581	NM_198253.2																																																																																
SESN2	83667	MSKCC	GRCh37	1	28601450	28601450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	204	628	0	ENST00000253063.3:c.1135G>A	p.Ala379Thr	p.A379T	ENST00000253063	NM_031459.4	379	Gcc/Acc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316331	14316331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	125	680	1	ENST00000256196.4:c.274G>A	p.Val92Ile	p.V92I	ENST00000256196		92	Gtc/Atc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755626	57755626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	177	594	2	ENST00000274289.3:c.161C>T	p.Ala54Val	p.A54V	ENST00000274289	NM_006622.3	54	gCg/gTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681650	30681650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	152	544	0	ENST00000376406.3:c.447G>C	p.Glu149Asp	p.E149D	ENST00000376406	NM_014641.2	149	gaG/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	94	389	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006898	47006898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0031505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	56	624	0	ENST00000329236.7:c.17+1G>T		p.X6_splice	ENST00000329236	NM_001204466.1	6																																																																															
GATA2	2624	MSKCC	GRCh37	3	128199939	128199939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	32	463	0	ENST00000341105.2:c.1366C>A	p.Pro456Thr	p.P456T	ENST00000341105	NM_032638.4	456	Ccg/Acg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458330	120458330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	41	499	0	ENST00000256646.2:c.7015A>G	p.Met2339Val	p.M2339V	ENST00000256646	NM_024408.3	2339	Atg/Gtg																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551703	150551703	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	41	227	1	ENST00000369026.2:c.304A>T	p.Thr102Ser	p.T102S	ENST00000369026	NM_021960.4	102	Acc/Tcc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343359	118343359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	38	347	0	ENST00000534358.1:c.1485G>T	p.Glu495Asp	p.E495D	ENST00000534358	NM_005933.3	495	gaG/gaT																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422032	81422032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	27	333	0	ENST00000298171.2:c.8C>A	p.Pro3Gln	p.P3Q	ENST00000298171	NM_000369.2	3	cCg/cAg																																																																														
BLM	641	MSKCC	GRCh37	15	91354621	91354621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	38	482	0	ENST00000355112.3:c.4061G>T	p.Gly1354Val	p.G1354V	ENST00000355112	NM_000057.2	1354	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0031505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	40	580	0	ENST00000269305.4:c.672+2T>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
NF1	4763	MSKCC	GRCh37	17	29508727	29508727	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	32	458	1	ENST00000358273.4:c.655-1G>T		p.X219_splice	ENST00000358273	NM_001042492.2	219																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022248	31022248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	15	269	0	ENST00000375687.4:c.1733G>C	p.Arg578Pro	p.R578P	ENST00000375687	NM_015338.5	578	cGt/cCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	215	587	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	109	283	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	170	400	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916931	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0031511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	69	467	1	ENST00000263967.3:c.317_318delinsTT	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGC/gTT																																																																														
APC	324	MSKCC	GRCh37	5	112175136	112175136	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	96	263	0	ENST00000257430.4:c.3845del	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/ta																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483953	212483953	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	69	423	0	ENST00000342788.4:c.2250del	p.Lys751ArgfsTer20	p.K751Rfs*20	ENST00000342788	NM_005235.2	750	atT/at																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668751	52668751	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	81	456	0	ENST00000394830.3:c.1168T>A	p.Tyr390Asn	p.Y390N	ENST00000394830	NM_018313.4	390	Tat/Aat																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53243870	53243870	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0031597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	138	293	0	ENST00000375401.3:c.1122+1G>T		p.X374_splice	ENST00000375401	NM_004187.3	374																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8518262	8518262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	64	216	1	ENST00000356435.5:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000356435		377	Cgc/Tgc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149502662	149502662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	48	344	0	ENST00000261799.4:c.2126G>A	p.Arg709His	p.R709H	ENST00000261799	NM_002609.3	709	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0031666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	135	493	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504584	103504584	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	184	464	0	ENST00000355739.4:c.205C>T	p.Arg69Ter	p.R69*	ENST00000355739	NM_000123.3	69	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579556	7579594	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGT	ATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGT	-			P-0031666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	267	747	1	ENST00000269305.4:c.97-4_131del		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
IKZF1	10320	MSKCC	GRCh37	7	50444356	50444356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	153	497	1	ENST00000331340.3:c.286C>T	p.His96Tyr	p.H96Y	ENST00000331340	NM_006060.4	96	Cac/Tac																																																																														
TSC1	7248	MSKCC	GRCh37	9	135801023	135801023	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	411	598	1	ENST00000298552.3:c.314A>G	p.His105Arg	p.H105R	ENST00000298552	NM_001162426.1	105	cAt/cGt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937372	76937372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	46	630	0	ENST00000373344.5:c.3376G>T	p.Asp1126Tyr	p.D1126Y	ENST00000373344	NM_000489.3	1126	Gat/Tat																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0032006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	42	223	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061202	+	inframe_deletion	In_Frame_Del	DEL	GAAGCGCTTCTG	GAAGCGCTTCTG	-			P-0032006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	156	336	1	ENST00000250448.2:c.787_798del	p.Gln263_Phe266del	p.Q263_F266del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTC/-																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538865	23538865	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	71	430	0	ENST00000380871.4:c.574G>C	p.Glu192Gln	p.E192Q	ENST00000380871	NM_006167.3	192	Gag/Cag																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742507	145742507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	291	627	5	ENST00000428558.2:c.281C>A	p.Pro94Gln	p.P94Q	ENST00000428558	NM_004260.3	94	cCa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	61	543	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	116	531	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112173668	112173668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	34	459	1	ENST00000257430.4:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000257430	NM_000038.5	793	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445697	49445697	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	139	982	0	ENST00000301067.7:c.1769T>G	p.Met590Arg	p.M590R	ENST00000301067	NM_003482.3	590	aTg/aGg																																																																														
APC	324	MSKCC	GRCh37	5	112175723	112175724	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	37	391	0	ENST00000257430.4:c.4435dup	p.Val1479GlyfsTer8	p.V1479Gfs*8	ENST00000257430	NM_000038.5	1478	agg/aGgg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120152	70120165	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGCAGCGAGCCG	TGAGCAGCGAGCCG	-			P-0032108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	28	298	0	ENST00000245479.2:c.1154_1167del	p.Leu385ArgfsTer188	p.L385Rfs*188	ENST00000245479	NM_000346.3	385	cTGAGCAGCGAGCCG/c																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	56	170	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	119	384	0	ENST00000349496.5:c.98C>A	p.Ser33Tyr	p.S33Y	ENST00000349496	NM_001904.3	33	tCt/tAt																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			374	165	715	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	83	428	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	159	636	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170088	32170088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	234	825	0	ENST00000375023.3:c.3520G>A	p.Gly1174Arg	p.G1174R	ENST00000375023	NM_004557.3	1174	Gga/Aga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	99	636	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	139	658	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625080	69625080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	35	538	1	ENST00000334134.2:c.713C>T	p.Ala238Val	p.A238V	ENST00000334134	NM_005247.2	238	gCg/gTg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	36	741	5	ENST00000434045.2:c.686delC	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	194	653	13	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	121	807	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	115	422	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	132	519	9	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	173	811	2	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	146	604	1	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	210	818	2	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696757	176696757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	132	461	0	ENST00000439151.2:c.5458G>A	p.Val1820Met	p.V1820M	ENST00000439151	NM_022455.4	1820	Gtg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096048	11096048	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	61	799	0	ENST00000344626.4:c.326del	p.Pro109ArgfsTer194	p.P109Rfs*194	ENST00000344626	NM_003072.3	108	Ccc/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303224	15303224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	104	940	1	ENST00000263388.2:c.304G>A	p.Ala102Thr	p.A102T	ENST00000263388	NM_000435.2	102	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023954	27023954	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			35	30	55	0	ENST00000324856.7:c.1060C>T	p.Gln354Ter	p.Q354*	ENST00000324856	NM_006015.4	354	Caa/Taa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347875	73347875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	76	442	0	ENST00000377767.4:c.1186C>T	p.Arg396Trp	p.R396W	ENST00000377767	NM_014953.3	396	Cgg/Tgg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	208	679	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480010	50480010	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	195	695	5	ENST00000394963.4:c.249del	p.Asn84ThrfsTer79	p.N84Tfs*79	ENST00000394963	NM_003076.4	82	Ggg/gg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99181137	99181137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	204	675	0	ENST00000074304.5:c.2078T>C	p.Leu693Pro	p.L693P	ENST00000074304	NM_001134224.1	693	cTg/cCg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	176	819	4	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542455	187542455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	69	607	2	ENST00000441802.2:c.5285C>T	p.Ala1762Val	p.A1762V	ENST00000441802	NM_005245.3	1762	gCg/gTg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793208	139793208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	192	662	0	ENST00000247668.2:c.16G>A	p.Val6Met	p.V6M	ENST00000247668	NM_021138.3	6	Gtg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11118633	11118635	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	185	651	3	ENST00000344626.4:c.2066_2068delAGA	p.Lys689del	p.K689del	ENST00000344626	NM_003072.3	686	gAGAag/gag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs768101780		P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	196	739	1	ENST00000543371.1:c.1485del	p.Ser496ProfsTer5	p.S496Pfs*5	ENST00000543371	NM_001198531.1	494	Ccc/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948755	71948755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	195	791	4	ENST00000298229.2:c.3470del	p.Gly1157AspfsTer45	p.G1157Dfs*45	ENST00000298229	NM_001567.3	1156	cGg/cg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605204	46605204	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	77	389	2	ENST00000263734.3:c.1421G>C	p.Ser474Thr	p.S474T	ENST00000263734	NM_001430.4	474	aGc/aCc																																																																														
ATM	472	MSKCC	GRCh37	11	108172509	108172510	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	43	345	1	ENST00000278616.4:c.5318dup	p.Phe1774ValfsTer8	p.F1774Vfs*8	ENST00000278616	NM_000051.3	1771	aga/agAa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515145	31515145	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			548	206	874	0	ENST00000344624.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000344624		414	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27098990	27098990	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	28	535	0	ENST00000324856.7:c.3407-1G>A		p.X1136_splice	ENST00000324856	NM_006015.4	1136																																																																															
JAK1	3716	MSKCC	GRCh37	1	65309821	65309821	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	226	690	0	ENST00000342505.4:c.2329T>A	p.Trp777Arg	p.W777R	ENST00000342505	NM_002227.2	777	Tgg/Agg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193205403	193205403	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	216	606	0	ENST00000367435.3:c.1338delT	p.Phe446LeufsTer33	p.F446Lfs*33	ENST00000367435	NM_024529.4	445	gTt/gt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943783	71943783	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	224	815	0	ENST00000298229.2:c.1826A>G	p.Asn609Ser	p.N609S	ENST00000298229	NM_001567.3	609	aAc/aGc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94911021	94911021	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	76	783	0	ENST00000536441.1:c.1109A>G	p.Asp370Gly	p.D370G	ENST00000536441	NM_144665.3	370	gAc/gGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444210	49444210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	114	814	0	ENST00000301067.7:c.3161C>A	p.Pro1054Gln	p.P1054Q	ENST00000301067	NM_003482.3	1054	cCg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448524	49448524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	167	571	2	ENST00000301067.7:c.187G>A	p.Val63Met	p.V63M	ENST00000301067	NM_003482.3	63	Gtg/Atg																																																																														
MDM2	4193	MSKCC	GRCh37	12	69207391	69207391	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	79	506	0	ENST00000462284.1:c.157A>T	p.Thr53Ser	p.T53S	ENST00000462284	NM_002392.5	53	Act/Tct																																																																														
RB1	5925	MSKCC	GRCh37	13	48878097	48878097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			56	49	57	0	ENST00000267163.4:c.49G>A	p.Ala17Thr	p.A17T	ENST00000267163	NM_000321.2	17	Gcc/Acc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068234	30068234	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	37	572	0	ENST00000331968.5:c.2165A>G	p.Gln722Arg	p.Q722R	ENST00000331968	NM_002742.2	722	cAg/cGg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934831	9934831	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	164	695	1	ENST00000330684.3:c.1459A>G	p.Lys487Glu	p.K487E	ENST00000330684	NM_001134407.1	487	Aag/Gag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032092	10032092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201674066		P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	184	724	1	ENST00000330684.3:c.731G>A	p.Arg244His	p.R244H	ENST00000330684	NM_001134407.1	244	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830959	72830959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	190	595	0	ENST00000268489.5:c.5622del	p.Glu1875LysfsTer39	p.E1875Kfs*39	ENST00000268489	NM_006885.3	1874	ccC/cc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89806443	89806447	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTT	CTCTT	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	185	703	0	ENST00000389301.3:c.3889_3893del	p.Lys1297GlufsTer14	p.K1297Efs*14	ENST00000389301	NM_000135.2	1297	AAGAGg/g																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30302676	30302676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	67	509	0	ENST00000322652.5:c.767G>A	p.Arg256His	p.R256H	ENST00000322652	NM_015355.2	256	cGt/cAt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265416	10265416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	194	780	1	ENST00000340748.4:c.1630C>T	p.Arg544Cys	p.R544C	ENST00000340748		544	Cgc/Tgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11135101	11135101	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	181	854	0	ENST00000344626.4:c.3068A>G	p.Glu1023Gly	p.E1023G	ENST00000344626	NM_003072.3	1023	gAg/gGg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955219	17955219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	193	807	1	ENST00000458235.1:c.8C>A	p.Pro3His	p.P3H	ENST00000458235	NM_000215.3	3	cCt/cAt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266831	18266831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	112	373	0	ENST00000222254.8:c.142G>C	p.Glu48Gln	p.E48Q	ENST00000222254	NM_005027.3	48	Gag/Cag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52724300	52724300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	46	594	0	ENST00000322088.6:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000322088	NM_014225.5	478	Gcc/Acc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607667	46607667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	240	811	0	ENST00000263734.3:c.1856C>T	p.Pro619Leu	p.P619L	ENST00000263734	NM_001430.4	619	cCg/cTg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37083823	37083823	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			198	275	576	0	ENST00000231790.2:c.1731+1G>A		p.X577_splice	ENST00000231790	NM_000249.3	577																																																																															
RHOA	387	MSKCC	GRCh37	3	49405961	49405961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	182	583	0	ENST00000418115.1:c.177C>A	p.Asp59Glu	p.D59E	ENST00000418115	NM_001664.2	59	gaC/gaA																																																																														
RYBP	23429	MSKCC	GRCh37	3	72428523	72428523	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	41	593	0	ENST00000477973.2:c.479A>G	p.Thr161Ala	p.T161A	ENST00000477973	NM_012234.5	161	Acc/Gcc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259220	89259220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	114	524	2	ENST00000336596.2:c.364C>A	p.Leu122Met	p.L122M	ENST00000336596	NM_005233.5	122	Ctg/Atg																																																																														
TP63	8626	MSKCC	GRCh37	3	189608629	189608629	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	202	684	0	ENST00000264731.3:c.1707del	p.Leu570Ter	p.L570*	ENST00000264731	NM_003722.4	568	caG/ca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521932	157521932	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	129	521	0	ENST00000346085.5:c.4204G>T	p.Glu1402Ter	p.E1402*	ENST00000346085	NM_020732.3	1402	Gag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879570	151879570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	147	479	0	ENST00000262189.6:c.5375A>G	p.His1792Arg	p.H1792R	ENST00000262189	NM_170606.2	1792	cAt/cGt																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207530	29207530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	34	508	1	ENST00000240100.2:c.266C>T	p.Ala89Val	p.A89V	ENST00000240100	NM_001394.6	89	gCc/gTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046324	69046324	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	53	596	0	ENST00000288368.4:c.3800del	p.Phe1267SerfsTer20	p.F1267Sfs*20	ENST00000288368	NM_024870.2	1266	gTt/gt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028731	47028731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	183	706	1	ENST00000329236.7:c.35G>T	p.Arg12Met	p.R12M	ENST00000329236	NM_001204466.1	12	aGg/aTg																																																																														
AR	367	MSKCC	GRCh37	X	66766381	66766381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032161-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			39	18	43	0	ENST00000374690.3:c.1393G>A	p.Gly465Ser	p.G465S	ENST00000374690	NM_000044.3	465	Ggc/Agc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593606	55593650	+	inframe_deletion	In_Frame_Del	DEL	AAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGAC	AAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGAC	-			P-0032319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	233	512	0	ENST00000288135.5:c.1672_1716del	p.Lys558_Asp572del	p.K558_D572del	ENST00000288135	NM_000222.2	558	AAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGAC/-																																																																														
MED12	9968	MSKCC	GRCh37	X	70352258	70352258	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	114	731	0	ENST00000374080.3:c.4285G>C	p.Ala1429Pro	p.A1429P	ENST00000374080		1429	Gcc/Ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	180	544	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412581	63412581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	190	274	0	ENST00000330258.3:c.586G>T	p.Gly196Trp	p.G196W	ENST00000330258	NM_152424.3	196	Ggg/Tgg																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589666	69589666	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	23	87	0	ENST00000168712.1:c.187C>T	p.Gln63Ter	p.Q63*	ENST00000168712	NM_002007.2	63	Cag/Tag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15365069	15365069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	40	447	0	ENST00000263377.2:c.2052G>C	p.Glu684Asp	p.E684D	ENST00000263377	NM_058243.2	684	gaG/gaC																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390812	139390814	+	missense_variant	Missense_Mutation	ONP	TCC	TCC	AAT			P-0032379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	56	772	1	ENST00000277541.6:c.7377_7379delinsATT	p.Glu2460Leu	p.E2460L	ENST00000277541	NM_017617.3	2459	caGGAg/caATTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391424	139391424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	86	664	2	ENST00000277541.6:c.6767C>T	p.Ala2256Val	p.A2256V	ENST00000277541	NM_017617.3	2256	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0032489-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			92	71	195	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40828000	40828000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032489-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	66	447	0	ENST00000373198.4:c.2428C>A	p.Gln810Lys	p.Q810K	ENST00000373198	NM_133170.3	810	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0032489-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	249	674	0	ENST00000269305.4:c.672+1G>C		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	78	350	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850991	63850991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	41	518	0	ENST00000279873.7:c.1769C>T	p.Pro590Leu	p.P590L	ENST00000279873	NM_032199.2	590	cCc/cTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692949	89692949	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	246	560	0	ENST00000371953.3:c.433T>G	p.Phe145Val	p.F145V	ENST00000371953	NM_000314.4	145	Ttt/Gtt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779623	3779623	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	219	749	0	ENST00000262367.5:c.5425A>C	p.Lys1809Gln	p.K1809Q	ENST00000262367	NM_004380.2	1809	Aaa/Caa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027198	48027198	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	130	603	0	ENST00000234420.5:c.2076A>T	p.Lys692Asn	p.K692N	ENST00000234420	NM_000179.2	692	aaA/aaT																																																																														
EP300	2033	MSKCC	GRCh37	22	41573282	41573282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	44	743	0	ENST00000263253.7:c.5567C>G	p.Thr1856Arg	p.T1856R	ENST00000263253	NM_001429.3	1856	aCg/aGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916860	178916863	+	missense_variant	Missense_Mutation	ONP	TTTG	TTTG	AAGA			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	186	672	2	ENST00000263967.3:c.247_250delinsAAGA	p.Phe83_Asp84delinsLysAsn	p.F83_D84delinsKN	ENST00000263967	NM_006218.2	83	TTTGat/AAGAat																																																																														
APC	324	MSKCC	GRCh37	5	112174840	112174840	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	10	334	0	ENST00000257430.4:c.3549T>G	p.Tyr1183Ter	p.Y1183*	ENST00000257430	NM_000038.5	1183	taT/taG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577523	7577524	+	protein_altering_variant	In_Frame_Ins	INS	-	-	CAT			P-0032490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	212	637	0	ENST00000269305.4:c.757_758insATG	p.Thr253delinsAsnAla	p.T253delinsNA	ENST00000269305	NM_001126112.2	253	acc/aATGcc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0032491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	65	510	1	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	22	336	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624301	89624301	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	38	536	0	ENST00000371953.3:c.75del	p.Thr26ProfsTer28	p.T26Pfs*28	ENST00000371953	NM_000314.4	25	ttG/tt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23634449	23634449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	63	424	0	ENST00000261584.4:c.2837C>T	p.Ala946Val	p.A946V	ENST00000261584	NM_024675.3	946	gCa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	272	687	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31016126	31016126	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	119	635	1	ENST00000375687.4:c.374-2A>G		p.X125_splice	ENST00000375687	NM_015338.5	125																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	111	462	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	88	416	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175388	112175389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	54	350	0	ENST00000257430.4:c.4098dup	p.Gln1367SerfsTer8	p.Q1367Sfs*8	ENST00000257430	NM_000038.5	1366	gct/gcTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864361	151864361	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	85	609	0	ENST00000262189.6:c.9620A>C	p.Lys3207Thr	p.K3207T	ENST00000262189	NM_170606.2	3207	aAa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	327	587	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813333	102813333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	205	518	2	ENST00000307046.8:c.356G>A	p.Arg119His	p.R119H	ENST00000307046	NM_001111285.1	119	cGc/cAc																																																																														
ERG	2078	MSKCC	GRCh37	21	39775601	39775601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146705250		P-0032494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	148	442	0	ENST00000288319.7:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000288319	NM_182918.3	140	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433995	49433995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	130	638	0	ENST00000301067.7:c.7558C>T	p.Arg2520Trp	p.R2520W	ENST00000301067	NM_003482.3	2520	Cgg/Tgg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737400	145737400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	212	674	1	ENST00000428558.2:c.3287G>A	p.Arg1096His	p.R1096H	ENST00000428558	NM_004260.3	1096	cGc/cAc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36989268	36989268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	81	442	0	ENST00000354822.5:c.67G>A	p.Gly23Ser	p.G23S	ENST00000354822	NM_001079668.2	23	Ggc/Agc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50810095	50810095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	75	498	0	ENST00000398568.2:c.919G>T	p.Val307Leu	p.V307L	ENST00000398568	NM_001042412.1	307	Gtg/Ttg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58677779	58677779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	99	424	0	ENST00000305921.3:c.4G>T	p.Ala2Ser	p.A2S	ENST00000305921	NM_003620.3	2	Gcg/Tcg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467605	66467605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	146	438	0	ENST00000273854.3:c.664G>T	p.Ala222Ser	p.A222S	ENST00000273854	NM_004439.5	222	Gct/Tct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389240	8389240	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0032494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	97	549	0	ENST00000356435.5:c.4378A>T	p.Arg1460Ter	p.R1460*	ENST00000356435		1460	Aga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	31	586	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0032498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	96	529	2	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549345	187549345	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	58	593	0	ENST00000441802.2:c.4773A>C	p.Lys1591Asn	p.K1591N	ENST00000441802	NM_005245.3	1591	aaA/aaC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604697	48604697	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	35	327	0	ENST00000342988.3:c.1519A>G	p.Lys507Glu	p.K507E	ENST00000342988	NM_005359.5	507	Aaa/Gaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970979	21970979	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	95	611	0	ENST00000304494.5:c.379del	p.Ala127HisfsTer19	p.A127Hfs*19	ENST00000304494	NM_000077.4	127	Gca/ca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970979	21970979	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	95	611	0	ENST00000304494.5:c.379del	p.Ala127HisfsTer19	p.A127Hfs*19	ENST00000304494	NM_000077.4	127	Gca/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0032511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	104	732	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242495	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAACATCTCCGAAAGCC	TTAAGAGAAGCAACATCTCCGAAAGCC	GCAACA			P-0032511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	30	338	1	ENST00000275493.2:c.2239_2265delinsGCAACA	p.Leu747_Ala755delinsAlaThr	p.L747_A755delinsAT	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCTCCGAAAGCC/GCAACA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509734	106509734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	85	439	2	ENST00000359195.3:c.1728G>T	p.Trp576Cys	p.W576C	ENST00000359195	NM_002649.2	576	tgG/tgT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0032529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	73	251	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579364	7579376	+	frameshift_variant	Frame_Shift_Del	DEL	CCGTAGCTGCCCT	CCGTAGCTGCCCT	-			P-0032529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	726	689	0	ENST00000269305.4:c.311_323del	p.Gln104LeufsTer15	p.Q104Lfs*15	ENST00000269305	NM_001126112.2	104	cAGGGCAGCTACGGt/ct																																																																														
NF1	4763	MSKCC	GRCh37	17	29422364	29422366	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0032529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	479	409	0	ENST00000358273.4:c.39_41del	p.Val14del	p.V14del	ENST00000358273	NM_001042492.2	13	GTG/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	42	637	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	68	760	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	19	401	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	19	401	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	19	401	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0032543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	650	586	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	1440	793	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
SRC	6714	MSKCC	GRCh37	20	36012660	36012660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	70	149	0	ENST00000358208.4:c.104C>T	p.Ser35Leu	p.S35L	ENST00000358208		35	tCg/tTg																																																																														
STK40	83931	MSKCC	GRCh37	1	36823931	36823931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144341018		P-0032573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	304	749	0	ENST00000373129.3:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000373129	NM_032017.1	84	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427962	49427962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	282	791	0	ENST00000301067.7:c.10628G>T	p.Cys3543Phe	p.C3543F	ENST00000301067	NM_003482.3	3543	tGt/tTt																																																																														
VHL	7428	MSKCC	GRCh37	3	10183769	10183769	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	54	722	0	ENST00000256474.2:c.238A>C	p.Ser80Arg	p.S80R	ENST00000256474	NM_000551.3	80	Agt/Cgt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562190	176562190	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032596-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	74	785	0	ENST00000439151.2:c.86del	p.Asp29AlafsTer53	p.D29Afs*53	ENST00000439151	NM_022455.4	29	gAc/gc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624275	89624275	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	37	390	1	ENST00000371953.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000371953	NM_000314.4	17	Caa/Taa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78435689	78435690	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	C			P-0032601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	16	390	0	ENST00000370768.2:c.130_131delinsG	p.Lys44GlufsTer10	p.K44Efs*10	ENST00000370768	NM_003902.3	44	AAa/Ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427664	49427665	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCTGC			P-0032604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	138	709	0	ENST00000301067.7:c.10818_10823dup	p.Gln3611_Gln3612dup	p.Q3611_Q3612dup	ENST00000301067	NM_003482.3	3611	caa/caGCAGCAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221448	36221448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	60	923	0	ENST00000222270.7:c.5207G>T	p.Arg1736Leu	p.R1736L	ENST00000222270	NM_014727.1	1736	cGc/cTc																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137528131	137528131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	33	333	0	ENST00000367739.4:c.169C>A	p.Pro57Thr	p.P57T	ENST00000367739	NM_000416.2	57	Cct/Act																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517910	8517910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	52	435	0	ENST00000356435.5:c.1481C>A	p.Ala494Asp	p.A494D	ENST00000356435		494	gCt/gAt																																																																														
TEK	7010	MSKCC	GRCh37	9	27217757	27217757	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	59	697	1	ENST00000380036.4:c.3062+1G>A		p.X1021_splice	ENST00000380036	NM_000459.3	1021																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	223	718	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	39	319	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	75	559	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	26	216	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31025008	31025008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150119795		P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	341	567	0	ENST00000375687.4:c.4493C>T	p.Thr1498Met	p.T1498M	ENST00000375687	NM_015338.5	1498	aCg/aTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829895	72829895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	111	737	0	ENST00000268489.5:c.6686C>T	p.Pro2229Leu	p.P2229L	ENST00000268489	NM_006885.3	2229	cCt/cTt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682173	37682173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	181	597	0	ENST00000447079.4:c.3364C>A	p.Leu1122Met	p.L1122M	ENST00000447079	NM_015083.1	1122	Ctg/Atg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910785	29910785	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	80	738	0	ENST00000376809.5:c.325T>A	p.Tyr109Asn	p.Y109N	ENST00000376809	NM_002116.7	109	Tac/Aac																																																																														
SMO	6608	MSKCC	GRCh37	7	128852272	128852272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	142	736	0	ENST00000249373.3:c.2344G>T	p.Asp782Tyr	p.D782Y	ENST00000249373	NM_005631.4	782	Gat/Tat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044952	47044952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	167	477	1	ENST00000329236.7:c.2044G>T	p.Ala682Ser	p.A682S	ENST00000329236	NM_001204466.1	682	Gcc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	38	405	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	34	328	0				ENST00000310581	NM_198253.2																																																																																
STAT3	6774	MSKCC	GRCh37	17	40467773	40467773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	51	477	0	ENST00000264657.5:c.2303C>T	p.Ser768Phe	p.S768F	ENST00000264657	NM_139276.2	768	tCc/tTc																																																																														
FYN	2534	MSKCC	GRCh37	6	112035584	112035584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	38	451	0	ENST00000368678.4:c.310C>T	p.His104Tyr	p.H104Y	ENST00000368678		104	Cac/Tac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845847	151845847	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	92	728	0	ENST00000262189.6:c.13165T>A	p.Ser4389Thr	p.S4389T	ENST00000262189	NM_170606.2	4389	Tcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	50	423	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	35	329	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106197443	106197443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	34	259	0	ENST00000380013.4:c.5776C>T	p.Arg1926Cys	p.R1926C	ENST00000380013	NM_001127208.2	1926	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	58	356	0	ENST00000278616.4:c.6908dupA	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																														
ATM	472	MSKCC	GRCh37	11	108124712	108124712	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	40	403	1	ENST00000278616.4:c.2071del	p.Asp691IlefsTer12	p.D691Ifs*12	ENST00000278616	NM_000051.3	690	ctG/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	742	745	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201874	152201874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	135	301	1	ENST00000206249.3:c.728G>A	p.Arg243His	p.R243H	ENST00000206249	NM_000125.3	243	cGt/cAt																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933510	36933510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	328	810	0	ENST00000361632.4:c.1777G>T	p.Ala593Ser	p.A593S	ENST00000361632		593	Gcc/Tcc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342376	118342376	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0032628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	47	165	0	ENST00000534358.1:c.503-1G>C		p.X168_splice	ENST00000534358	NM_005933.3	168																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88669604	88669604	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	90	270	0	ENST00000360948.2:c.1294G>A	p.Val432Ile	p.V432I	ENST00000360948	NM_001012338.2	432	Gta/Ata																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119892	70119988	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCCCAACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTACACGGGCAGCTACGGCATCAGCAGCACCGCGGCCACCCCGGCGAGC	GCCGCCCAACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTACACGGGCAGCTACGGCATCAGCAGCACCGCGGCCACCCCGGCGAGC	-			P-0032628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	175	620	0	ENST00000245479.2:c.896_992del	p.Pro299ArgfsTer52	p.P299Rfs*52	ENST00000245479	NM_000346.3	298	ctGCCGCCCAACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTACACGGGCAGCTACGGCATCAGCAGCACCGCGGCCACCCCGGCGAGC/ct																																																																														
NBN	4683	MSKCC	GRCh37	8	90971055	90971055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	272	349	0	ENST00000265433.3:c.1022G>A	p.Ser341Asn	p.S341N	ENST00000265433	NM_002485.4	341	aGc/aAc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577494	64577495	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCGGCCCAGCTCGGCAGCAAACAGGCGCACCACGTCGTCGATGGAGCGCAGCGG			P-0032629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	27	512	0	ENST00000337652.1:c.34_87dup	p.Pro12_Arg29dup	p.P12_R29dup	ENST00000337652	NM_130803.2	12	-/CCGCTGCGCTCCATCGACGACGTGGTGCGCCTGTTTGCTGCCGAGCTGGGCCGA																																																																														
ATRX	546	MSKCC	GRCh37	X	76937813	76937815	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	CAG	CAG	-			P-0032629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	57	349	0	ENST00000373344.5:c.2933_2935del	p.Ser978_Glu979delinsTer	p.S978_E979delins*	ENST00000373344	NM_000489.3	978	tCTGaa/taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	122	656	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	22	300	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	111	861	0	ENST00000269305.4:c.772del	p.Glu258LysfsTer87	p.E258Kfs*87	ENST00000269305	NM_001126112.2	258	Gaa/aa																																																																														
CCND1	595	MSKCC	GRCh37	11	69465886	69465886	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1772	117	745	0	ENST00000227507.2:c.724G>T	p.Asp242Tyr	p.D242Y	ENST00000227507	NM_053056.2	242	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380328	25380328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	87	512	0	ENST00000256078.4:c.130G>C	p.Val44Leu	p.V44L	ENST00000256078	NM_033360.2	44	Gta/Cta																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715828	61715828	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	28	567	0	ENST00000401558.2:c.2101G>C	p.Ala701Pro	p.A701P	ENST00000401558	NM_003400.3	701	Gct/Cct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	149	469	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0032633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	142	517	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0032633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	96	335	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	481	886	1	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119974	70120026	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCGCCGCC	GCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCGCCGCC	-			P-0032633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	44	288	0	ENST00000245479.2:c.984_1036del	p.Ser330AlafsTer230	p.S330Afs*230	ENST00000245479	NM_000346.3	326	GCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCGCCGCCg/g																																																																														
APC	324	MSKCC	GRCh37	5	112162813	112162813	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	97	405	0	ENST00000257430.4:c.1417C>T	p.Gln473Ter	p.Q473*	ENST00000257430	NM_000038.5	473	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0032637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	172	539	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
MYCL	4610	MSKCC	GRCh37	1	40367096	40367097	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGTA			P-0032637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	219	613	0	ENST00000397332.2:c.97_100dup	p.Asp34ValfsTer12	p.D34Vfs*12	ENST00000397332	NM_001033082.2	34	gac/gTACGac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711879	89711880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0032637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	68	497	0	ENST00000371953.3:c.498_499dup	p.Thr167LysfsTer17	p.T167Kfs*17	ENST00000371953	NM_000314.4	166	gta/gtAAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29588756	29588756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	88	293	0	ENST00000358273.4:c.4608del	p.Phe1536LeufsTer38	p.F1536Lfs*38	ENST00000358273	NM_001042492.2	1535	ccT/cc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575690	48575691	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATG			P-0032637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	122	520	0	ENST00000342988.3:c.451_454dup	p.Ala152GlufsTer11	p.A152Efs*11	ENST00000342988	NM_005359.5	150	-/AATG																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259663	89259674	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGCCAAGGTAA	GTGCCAAGGTAA	-			P-0032637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	49	314	0	ENST00000336596.2:c.808_814+5del		p.X270_splice	ENST00000336596	NM_005233.5	270																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56181827	56181830	+	frameshift_variant	Frame_Shift_Del	DEL	GAAC	GAAC	-			P-0032637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	103	405	0	ENST00000399503.3:c.4051_4054del	p.Glu1351SerfsTer25	p.E1351Sfs*25	ENST00000399503	NM_005921.1	1351	GAACag/ag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845741	151845755	+	inframe_deletion	In_Frame_Del	DEL	AAGTCAAGGTTGAGT	AAGTCAAGGTTGAGT	-			P-0032637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	179	691	0	ENST00000262189.6:c.13257_13271del	p.Leu4420_Leu4424del	p.L4420_L4424del	ENST00000262189	NM_170606.2	4419	ctACTCAACCTTGACTTg/ctg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625218	69625218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1666	106	832	0	ENST00000334134.2:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000334134	NM_005247.2	192	cGg/cAg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953214	81953214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	211	385	1	ENST00000359376.3:c.2180G>A	p.Arg727Gln	p.R727Q	ENST00000359376	NM_002661.3	727	cGa/cAa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346897	89346897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	30	277	0	ENST00000301030.4:c.6053C>T	p.Pro2018Leu	p.P2018L	ENST00000301030	NM_001256183.1	2018	cCt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	517	718	3	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374930	45374930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	199	508	0	ENST00000262160.6:c.913C>T	p.Pro305Ser	p.P305S	ENST00000262160	NM_005901.5	305	Cca/Tca																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855469	45855469	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0032640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	372	680	0	ENST00000391945.4:c.2188C>G	p.Arg730Gly	p.R730G	ENST00000391945	NM_000400.3	730	Cgg/Ggg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39285815	39285815	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0032640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	54	483	0	ENST00000402219.2:c.344A>C	p.Lys115Thr	p.K115T	ENST00000402219	NM_005633.3	115	aAg/aCg																																																																														
CASP8	841	MSKCC	GRCh37	2	202141609	202141612	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-			P-0032640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	63	381	0	ENST00000358485.4:c.899_902del	p.Asn300ThrfsTer29	p.N300Tfs*29	ENST00000358485	NM_001080125.1	299	aaCAAT/aa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31380450	31380450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	84	508	1	ENST00000328111.2:c.940G>T	p.Gly314Cys	p.G314C	ENST00000328111	NM_006892.3	314	Ggc/Tgc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275191	41275191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	62	434	0	ENST00000349496.5:c.1357C>T	p.Arg453Trp	p.R453W	ENST00000349496	NM_001904.3	453	Cgg/Tgg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185161264	185161264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	285	650	0	ENST00000265026.3:c.691A>G	p.Ile231Val	p.I231V	ENST00000265026	NM_004721.4	231	Att/Gtt																																																																														
HGF	3082	MSKCC	GRCh37	7	81374432	81374432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	88	416	0	ENST00000222390.5:c.630A>T	p.Glu210Asp	p.E210D	ENST00000222390	NM_000601.4	210	gaA/gaT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139407967	139407967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	149	831	1	ENST00000277541.6:c.2230G>T	p.Gly744Trp	p.G744W	ENST00000277541	NM_017617.3	744	Ggg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	22	537	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	285	916	3	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0032667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	73	357	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	194	525	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715847	117715847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	59	486	0	ENST00000368508.3:c.911G>T	p.Arg304Ile	p.R304I	ENST00000368508	NM_002944.2	304	aGa/aTa																																																																														
APC	324	MSKCC	GRCh37	5	112175547	112175548	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	67	378	1	ENST00000257430.4:c.4260dup	p.Ser1421GlnfsTer2	p.S1421Qfs*2	ENST00000257430	NM_000038.5	1419	agc/agCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	97	342	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	167	654	0	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0032668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	53	149	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
PGR	5241	MSKCC	GRCh37	11	100996797	100996797	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	113	367	0	ENST00000325455.5:c.1730G>C	p.Cys577Ser	p.C577S	ENST00000325455	NM_001202474.3	577	tGt/tCt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527892	103527892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	35	196	0	ENST00000355739.4:c.3200C>T	p.Ser1067Leu	p.S1067L	ENST00000355739	NM_000123.3	1067	tCa/tTa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20480107	20480107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	103	304	0	ENST00000346618.3:c.424G>A	p.Gly142Ser	p.G142S	ENST00000346618	NM_001949.4	142	Ggt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	41	520	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	28	623	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	43	707	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	16	352	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	18	338	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
WT1	7490	MSKCC	GRCh37	11	32455870	32456600	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTGGCGTTTCCTTAATTAACAAAACTCTCCCCAAGGCAGAGCCAGACACTGCGCCGGTCTCCTGGTTCCACTCCCGTGGGGACTAGCAGTCCCGGAATCTCTCGGACTCTAAGGGGCCCCAGACGCCCTCCCGGCTCTTGCGAACAGTCAGGCTCCTAGCTCTGCCTGGCTTTGGAGGATGTCGGGGGCCAGTGCCTGCGTGCACTCCCACTCTCCGGCCTCCTCCCCAGCCGCCGCTTCCGCTATCCTCACGGCCCTTGGGAAGCAGCTGGGTAAGAGCTGCGGTCAAAAGGGGTAGGAGAGGGGGGTGTCCTAGAGCGGAGAGTCCCTGGCGCCACTGCCCCGCGCGTAGGGGGCGCTCCCCGGCCTACTTACCCTGATTGCGAATAGCGGGCTGGCTCTCGAGGCAGCTGGGCAGGTAGGGCGCGTTAGGAAACATCCTGGCCTGGCCGGATGACGCCTGGCTGGGCGGAGGAGGACCGAAGGGCCCGTAGCGACAGGCTCCGGCTGTGCCAGTGAACTGGCCGGAAAAGTGGACAGTGAAGGCGCTCAGGCACTGCTCCTCGTGCGGCTCCGCGCCGCCCCAGCTCGGCTCCTGTTTGATGAAGGAGTGAGGCGGCGGCGGCGGGGGTGGCGGCGGAGCCGGTGGCGGCGCGGGGCCGCCCAACGACCCGTAAGCCGAAGCGCCCGGGGGCGCAAAGTCCAGCACCGGCGCCCACTGCGCCGCGCC	TTTGGCGTTTCCTTAATTAACAAAACTCTCCCCAAGGCAGAGCCAGACACTGCGCCGGTCTCCTGGTTCCACTCCCGTGGGGACTAGCAGTCCCGGAATCTCTCGGACTCTAAGGGGCCCCAGACGCCCTCCCGGCTCTTGCGAACAGTCAGGCTCCTAGCTCTGCCTGGCTTTGGAGGATGTCGGGGGCCAGTGCCTGCGTGCACTCCCACTCTCCGGCCTCCTCCCCAGCCGCCGCTTCCGCTATCCTCACGGCCCTTGGGAAGCAGCTGGGTAAGAGCTGCGGTCAAAAGGGGTAGGAGAGGGGGGTGTCCTAGAGCGGAGAGTCCCTGGCGCCACTGCCCCGCGCGTAGGGGGCGCTCCCCGGCCTACTTACCCTGATTGCGAATAGCGGGCTGGCTCTCGAGGCAGCTGGGCAGGTAGGGCGCGTTAGGAAACATCCTGGCCTGGCCGGATGACGCCTGGCTGGGCGGAGGAGGACCGAAGGGCCCGTAGCGACAGGCTCCGGCTGTGCCAGTGAACTGGCCGGAAAAGTGGACAGTGAAGGCGCTCAGGCACTGCTCCTCGTGCGGCTCCGCGCCGCCCCAGCTCGGCTCCTGTTTGATGAAGGAGTGAGGCGGCGGCGGCGGGGGTGGCGGCGGAGCCGGTGGCGGCGCGGGGCCGCCCAACGACCCGTAAGCCGAAGCGCCCGGGGGCGCAAAGTCCAGCACCGGCGCCCACTGCGCCGCGCC	-			P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	22	11	0	ENST00000332351.3:c.292_646+376del		p.X98_splice	ENST00000332351	NM_024426.4	98																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153244227	153244227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	41	455	0	ENST00000281708.4:c.1930G>A	p.Gly644Arg	p.G644R	ENST00000281708	NM_033632.3	644	Gga/Aga																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730008	41730008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	84	680	1	ENST00000242208.4:c.521G>T	p.Arg174Leu	p.R174L	ENST00000242208	NM_002192.2	174	cGc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	80	344	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	78	296	0				ENST00000310581	NM_198253.2																																																																																
JUN	3725	MSKCC	GRCh37	1	59247813	59247814	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTTTAAGCTG			P-0032674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1264	72	968	0	ENST00000371222.2:c.919_929dup	p.Gln310HisfsTer8	p.Q310Hfs*8	ENST00000371222	NM_002228.3	310	cag/caCAGCTTAAACAg																																																																														
ATM	472	MSKCC	GRCh37	11	108180949	108180949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	35	347	1	ENST00000278616.4:c.5825C>T	p.Ala1942Val	p.A1942V	ENST00000278616	NM_000051.3	1942	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	149	632	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	78	477	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	100	474	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	54	227	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	72	333	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720699	89720699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	21	114	0	ENST00000371953.3:c.850G>T	p.Glu284Ter	p.E284*	ENST00000371953	NM_000314.4	284	Gag/Tag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63531763	63531763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	123	582	0	ENST00000307078.5:c.2218C>T	p.Pro740Ser	p.P740S	ENST00000307078	NM_004655.3	740	Cca/Tca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	211	337	0	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911625	114911625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	96	378	0	ENST00000543371.1:c.1143C>G	p.Asn381Lys	p.N381K	ENST00000543371	NM_001198531.1	381	aaC/aaG																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104636	69104636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	157	600	0	ENST00000288368.4:c.4480C>T	p.Arg1494Cys	p.R1494C	ENST00000288368	NM_024870.2	1494	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	59	472	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	69	352	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609894	117609894	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs202153378		P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	129	637	2	ENST00000368508.3:c.6805C>T	p.Arg2269Ter	p.R2269*	ENST00000368508	NM_002944.2	2269	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	146	681	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	85	275	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	117	660	7	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	187	469	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	128	644	1	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277275	41277275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	118	361	2	ENST00000349496.5:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000349496	NM_001904.3	582	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521299	187521299	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	129	586	3	ENST00000441802.2:c.11856delT	p.Phe3952LeufsTer31	p.F3952Lfs*31	ENST00000441802	NM_005245.3	3952	ttT/tt																																																																														
RB1	5925	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	73	219	0	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	140	612	3	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
POLE	5426	MSKCC	GRCh37	12	133219579	133219579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	87	457	0	ENST00000320574.5:c.4555C>T	p.Arg1519Cys	p.R1519C	ENST00000320574	NM_006231.2	1519	Cgc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	153	429	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222708	5222708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	100	403	0	ENST00000357368.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000357368	NM_002850.3	1032	cGg/cAg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	20	106	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412058	63412059	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	169	899	0	ENST00000330258.3:c.1108dupG	p.Glu370GlyfsTer8	p.E370Gfs*8	ENST00000330258	NM_152424.3	370	gag/gGag																																																																														
ABL1	25	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	118	647	1	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836985	89836985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	115	547	2	ENST00000389301.3:c.2209G>A	p.Ala737Thr	p.A737T	ENST00000389301	NM_000135.2	737	Gct/Act																																																																														
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	60	240	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958190	2958190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	123	625	1	ENST00000396946.4:c.2542C>T	p.Arg848Cys	p.R848C	ENST00000396946	NM_032415.4	848	Cgc/Tgc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	135	554	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
CARM1	10498	MSKCC	GRCh37	19	11032084	11032084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	106	651	0	ENST00000327064.4:c.1649G>A	p.Arg550Gln	p.R550Q	ENST00000327064	NM_199141.1	550	cGg/cAg																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022990	33022990	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	77	403	0	ENST00000300177.4:c.104delC	p.Pro35ArgfsTer49	p.P35Rfs*49	ENST00000300177	NM_001191322.1	33	atC/at																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	87	460	1	ENST00000282397.4:c.166delG	p.Glu56LysfsTer12	p.E56Kfs*12	ENST00000282397	NM_002019.4	56	Gaa/aa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204992	128204992	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	90	651	1	ENST00000341105.2:c.449del	p.Gly150GlufsTer68	p.G150Efs*68	ENST00000341105	NM_032638.4	150	gGa/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	106	631	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952013	178952013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	95	429	1	ENST00000263967.3:c.3068G>A	p.Arg1023Gln	p.R1023Q	ENST00000263967	NM_006218.2	1023	cGa/cAa																																																																														
MED12	9968	MSKCC	GRCh37	X	70349594	70349594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	131	604	0	ENST00000374080.3:c.3756G>T	p.Glu1252Asp	p.E1252D	ENST00000374080		1252	gaG/gaT																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281255	46281255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	66	390	0	ENST00000371998.3:c.4052C>T	p.Pro1351Leu	p.P1351L	ENST00000371998		1351	cCg/cTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281305	15281305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	115	549	0	ENST00000263388.2:c.4951G>A	p.Ala1651Thr	p.A1651T	ENST00000263388	NM_000435.2	1651	Gct/Act																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095665	178095666	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	123	560	0	ENST00000397062.3:c.1665dup	p.Gln556ThrfsTer15	p.Q556Tfs*15	ENST00000397062	NM_006164.4	555	-/A																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477073	67477073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	188	424	0	ENST00000327367.4:c.880G>A	p.Val294Met	p.V294M	ENST00000327367	NM_005902.3	294	Gtg/Atg																																																																														
ALK	238	MSKCC	GRCh37	2	29446229	29446229	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199987354		P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	95	509	1	ENST00000389048.3:c.3338G>A	p.Arg1113Gln	p.R1113Q	ENST00000389048	NM_004304.4	1113	cGg/cAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874749	151874749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	86	413	0	ENST00000262189.6:c.7789C>G	p.Pro2597Ala	p.P2597A	ENST00000262189	NM_170606.2	2597	Cca/Gca																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259567	16259567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	111	441	0	ENST00000375759.3:c.6832G>A	p.Ala2278Thr	p.A2278T	ENST00000375759	NM_015001.2	2278	Gct/Act																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46512252	46512252	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	94	482	1	ENST00000262741.5:c.987G>A	p.Trp329Ter	p.W329*	ENST00000262741	NM_003629.3	329	tgG/tgA																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206648237	206648237	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	98	543	0	ENST00000367120.3:c.258G>T	p.Met86Ile	p.M86I	ENST00000367120	NM_014002.3	86	atG/atT																																																																														
ATM	472	MSKCC	GRCh37	11	108139302	108139302	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3218708		P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	124	600	2	ENST00000278616.4:c.2804C>T	p.Thr935Met	p.T935M	ENST00000278616	NM_000051.3	935	aCg/aTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118354958	118354958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	105	407	0	ENST00000534358.1:c.4147C>A	p.Leu1383Ile	p.L1383I	ENST00000534358	NM_005933.3	1383	Ctc/Atc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125503064	125503064	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	66	351	0	ENST00000428830.2:c.431T>A	p.Leu144His	p.L144H	ENST00000428830	NM_001114121.2	144	cTc/cAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574716	95574716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	95	404	2	ENST00000343455.3:c.2381C>A	p.Pro794His	p.P794H	ENST00000343455	NM_177438.2	794	cCt/cAt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3646298	3646298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	54	885	0	ENST00000294008.3:c.1780G>T	p.Gly594Cys	p.G594C	ENST00000294008	NM_032444.2	594	Ggc/Tgc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89862403	89862403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	115	551	1	ENST00000389301.3:c.917C>T	p.Thr306Met	p.T306M	ENST00000389301	NM_000135.2	306	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7573010	7573010	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	36	439	0	ENST00000269305.4:c.1101-2A>C		p.X367_splice	ENST00000269305	NM_001126112.2	367																																																																															
STAT5A	6776	MSKCC	GRCh37	17	40444065	40444065	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	93	547	0	ENST00000345506.4:c.361C>T	p.Arg121Ter	p.R121*	ENST00000345506	NM_003152.3	121	Cga/Tga																																																																														
INSR	3643	MSKCC	GRCh37	19	7152805	7152805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	157	644	0	ENST00000302850.5:c.2163G>T	p.Lys721Asn	p.K721N	ENST00000302850	NM_000208.2	721	aaG/aaT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303080	15303080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	44	834	0	ENST00000263388.2:c.370C>A	p.Leu124Ile	p.L124I	ENST00000263388	NM_000435.2	124	Ctc/Atc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349722	15349722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	158	724	0	ENST00000263377.2:c.3852G>T	p.Glu1284Asp	p.E1284D	ENST00000263377	NM_058243.2	1284	gaG/gaT																																																																														
CD79A	973	MSKCC	GRCh37	19	42383353	42383353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	96	441	2	ENST00000221972.3:c.373G>A	p.Val125Met	p.V125M	ENST00000221972	NM_021601.3	125	Gtg/Atg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467164	25467164	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	65	518	2	ENST00000264709.3:c.1711del	p.Ala571LeufsTer80	p.A571Lfs*80	ENST00000264709	NM_175629.2	571	Gct/ct																																																																														
CASP8	841	MSKCC	GRCh37	2	202137460	202137460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	91	377	0	ENST00000358485.4:c.688C>A	p.Leu230Met	p.L230M	ENST00000358485	NM_001080125.1	230	Ctg/Atg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31380472	31380472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	108	516	1	ENST00000328111.2:c.962C>A	p.Pro321His	p.P321H	ENST00000328111	NM_006892.3	321	cCt/cAt																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62317157	62317157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	167	682	1	ENST00000508582.2:c.1352C>T	p.Pro451Leu	p.P451L	ENST00000508582		451	cCt/cTt																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319059	62319059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	164	806	0	ENST00000508582.2:c.1489C>T	p.Arg497Cys	p.R497C	ENST00000508582		497	Cgc/Tgc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574371	41574371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	120	640	0	ENST00000263253.7:c.6656A>G	p.Tyr2219Cys	p.Y2219C	ENST00000263253	NM_001429.3	2219	tAc/tGc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37092009	37092009	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	244	508	1	ENST00000231790.2:c.2136G>A	p.Trp712Ter	p.W712*	ENST00000231790	NM_000249.3	712	tgG/tgA																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933628	49933628	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	157	867	1	ENST00000296474.3:c.2649G>T	p.Glu883Asp	p.E883D	ENST00000296474	NM_002447.2	883	gaG/gaT																																																																														
TP63	8626	MSKCC	GRCh37	3	189612282	189612282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	70	338	0	ENST00000264731.3:c.2038del	p.Glu680SerfsTer24	p.E680Sfs*24	ENST00000264731	NM_003722.4	678	gaG/ga																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1941440	1941440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	50	564	0	ENST00000382891.5:c.1816G>A	p.Ala606Thr	p.A606T	ENST00000382891	NM_133335.3	606	Gca/Aca																																																																														
KDR	3791	MSKCC	GRCh37	4	55968667	55968667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	107	444	0	ENST00000263923.4:c.1996G>A	p.Ala666Thr	p.A666T	ENST00000263923	NM_002253.2	666	Gca/Aca																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384747	84384747	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	71	351	0	ENST00000321945.7:c.696del	p.Val233TrpfsTer8	p.V233Wfs*8	ENST00000321945	NM_139076.2	232	aaA/aa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526204	31526204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	179	834	0	ENST00000344624.3:c.836G>A	p.Arg279His	p.R279H	ENST00000344624		279	cGc/cAc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161222	56161222	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	125	526	0	ENST00000399503.3:c.1093del	p.Val365CysfsTer4	p.V365Cfs*4	ENST00000399503	NM_005921.1	364	cGg/cg																																																																														
SMO	6608	MSKCC	GRCh37	7	128829017	128829017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	18	29	0	ENST00000249373.3:c.25G>A	p.Gly9Arg	p.G9R	ENST00000249373	NM_005631.4	9	Ggg/Agg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485992	8485992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	106	524	0	ENST00000356435.5:c.2825C>T	p.Pro942Leu	p.P942L	ENST00000356435		942	cCt/cTt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123196796	123196796	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	24	440	0	ENST00000218089.9:c.1687del	p.Ile563SerfsTer13	p.I563Sfs*13	ENST00000218089	NM_001042749.1	561	acA/ac																																																																														
ATM	472	MSKCC	GRCh37	11	108224493	108224493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			63	116	224	0	ENST00000278616.4:c.8672G>A	p.Gly2891Asp	p.G2891D	ENST00000278616	NM_000051.3	2891	gGt/gAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55602719	55602719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	176	424	1	ENST00000288135.5:c.2540C>T	p.Thr847Met	p.T847M	ENST00000288135	NM_000222.2	847	aCg/aTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29585431	29585431	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	243	514	0	ENST00000358273.4:c.4243A>T	p.Asn1415Tyr	p.N1415Y	ENST00000358273	NM_001042492.2	1415	Aat/Tat																																																																														
AKT2	208	MSKCC	GRCh37	19	40748455	40748455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	80	490	0	ENST00000392038.2:c.427G>C	p.Ala143Pro	p.A143P	ENST00000392038	NM_001626.4	143	Gca/Cca																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267337	198267338	+	inframe_insertion	In_Frame_Ins	INS	-	-	AATAGCTATCTGTTGTACAATCTTAATACC			P-0032710-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	57	440	0	ENST00000335508.6:c.1990_2019dup	p.Gly664_Ile673dup	p.G664_I673dup	ENST00000335508	NM_012433.2	664	-/GGTATTAAGATTGTACAACAGATAGCTATT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257842	16257842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	68	438	0	ENST00000375759.3:c.5111delC	p.Pro1704GlnfsTer11	p.P1704Qfs*11	ENST00000375759	NM_015001.2	1703	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106330	27106330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	122	503	0	ENST00000324856.7:c.5941T>C	p.Cys1981Arg	p.C1981R	ENST00000324856	NM_006015.4	1981	Tgc/Cgc																																																																														
MPL	4352	MSKCC	GRCh37	1	43803901	43803901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	154	408	0	ENST00000372470.3:c.211C>T	p.Arg71Trp	p.R71W	ENST00000372470	NM_005373.2	71	Cgg/Tgg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46715742	46715742	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	95	472	0	ENST00000371975.4:c.161C>A	p.Pro54His	p.P54H	ENST00000371975	NM_003579.3	54	cCt/cAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115252188	115252188	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	75	334	0	ENST00000369535.4:c.450+2T>C		p.X150_splice	ENST00000369535	NM_002524.4	150																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156849855	156849855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	106	549	0	ENST00000524377.1:c.2111T>C	p.Phe704Ser	p.F704S	ENST00000524377	NM_002529.3	704	tTc/tCc																																																																														
RET	5979	MSKCC	GRCh37	10	43572711	43572711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	57	123	0	ENST00000355710.3:c.5C>T	p.Ala2Val	p.A2V	ENST00000355710	NM_020975.4	2	gCg/gTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	159	355	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136040	64136040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	99	595	0	ENST00000334205.4:c.1301G>A	p.Gly434Asp	p.G434D	ENST00000334205	NM_003942.2	434	gGc/gAc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137791	64137791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	126	706	2	ENST00000334205.4:c.1892G>A	p.Gly631Glu	p.G631E	ENST00000334205	NM_003942.2	631	gGg/gAg																																																																														
SDHD	6392	MSKCC	GRCh37	11	111965527	111965527	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	109	303	0	ENST00000375549.3:c.315-2A>G		p.X105_splice	ENST00000375549	NM_003002.3	105																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118307348	118307348	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	10	10	0	ENST00000534358.1:c.126del	p.Pro45ArgfsTer105	p.P45Rfs*105	ENST00000534358	NM_005933.3	41	Ccc/cc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	104	635	2	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505404	125505404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	132	319	0	ENST00000428830.2:c.694A>G	p.Lys232Glu	p.K232E	ENST00000428830	NM_001114121.2	232	Aaa/Gaa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	35	189	2	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644434	18644434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	70	400	0	ENST00000266497.5:c.2612T>C	p.Val871Ala	p.V871A	ENST00000266497		871	gTa/gCa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	113	557	4	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	139	461	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246076	46246076	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	110	336	0	ENST00000334344.6:c.4170A>G	p.Ile1390Met	p.I1390M	ENST00000334344	NM_152641.2	1390	atA/atG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427129	49427129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	310	583	0	ENST00000301067.7:c.11359G>A	p.Val3787Ile	p.V3787I	ENST00000301067	NM_003482.3	3787	Gtc/Atc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427708	49427708	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	332	613	0	ENST00000301067.7:c.10780G>T	p.Glu3594Ter	p.E3594*	ENST00000301067	NM_003482.3	3594	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	197	593	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	283	454	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112218	115112218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	155	334	0	ENST00000257566.3:c.1522G>A	p.Ala508Thr	p.A508T	ENST00000257566	NM_016569.3	508	Gcg/Acg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112283	115112283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	119	94	0	ENST00000257566.3:c.1457C>T	p.Thr486Met	p.T486M	ENST00000257566	NM_016569.3	486	aCg/aTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118854	115118854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	83	435	0	ENST00000257566.3:c.487T>C	p.Tyr163His	p.Y163H	ENST00000257566	NM_016569.3	163	Tat/Cat																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800916	120800916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	86	540	0	ENST00000257552.2:c.332T>C	p.Ile111Thr	p.I111T	ENST00000257552	NM_002442.3	111	aTc/aCc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562618	21562618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	48	201	0	ENST00000382592.4:c.1301C>T	p.Ala434Val	p.A434V	ENST00000382592	NM_014572.2	434	gCt/gTt																																																																														
CDK8	1024	MSKCC	GRCh37	13	26927982	26927982	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	73	478	0	ENST00000381527.3:c.421T>C	p.Tyr141His	p.Y141H	ENST00000381527	NM_001260.1	141	Tac/Cac																																																																														
FLT1	2321	MSKCC	GRCh37	13	28896469	28896470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	124	332	0	ENST00000282397.4:c.2980dup	p.Ile994AsnfsTer39	p.I994Nfs*39	ENST00000282397	NM_002019.4	994	atc/aAtc																																																																														
RB1	5925	MSKCC	GRCh37	13	48916852	48916852	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	41	298	0	ENST00000267163.4:c.380+2T>C		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																															
RB1	5925	MSKCC	GRCh37	13	49030368	49030368	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	59	279	0	ENST00000267163.4:c.1848delA	p.Gly617ValfsTer6	p.G617Vfs*6	ENST00000267163	NM_000321.2	615	Aaa/aa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518670	103518670	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	36	297	0	ENST00000355739.4:c.2262delA	p.Lys754AsnfsTer46	p.K754Nfs*46	ENST00000355739	NM_000123.3	753	cAa/ca																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482771	67482771	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	193	415	0	ENST00000327367.4:c.1179delC	p.Cys394AlafsTer7	p.C394Afs*7	ENST00000327367	NM_005902.3	392	aCc/ac																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640518	3640518	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	110	695	1	ENST00000294008.3:c.3121del	p.Gln1041ArgfsTer75	p.Q1041Rfs*75	ENST00000294008	NM_032444.2	1041	Cag/ag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777952	3777952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	165	771	0	ENST00000262367.5:c.7096C>T	p.Arg2366Trp	p.R2366W	ENST00000262367	NM_004380.2	2366	Cgg/Tgg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786703	3786703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	98	601	0	ENST00000262367.5:c.4508A>G	p.Tyr1503Cys	p.Y1503C	ENST00000262367	NM_004380.2	1503	tAc/tGc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	99	419	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56857698	56857698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	174	393	0	ENST00000308159.5:c.734G>A	p.Arg245His	p.R245H	ENST00000308159	NM_014669.4	245	cGc/cAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	102	384	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827589	72827589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	226	643	0	ENST00000268489.5:c.8992C>T	p.Arg2998Trp	p.R2998W	ENST00000268489	NM_006885.3	2998	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831764	72831764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	109	627	0	ENST00000268489.5:c.4817G>A	p.Ser1606Asn	p.S1606N	ENST00000268489	NM_006885.3	1606	aGc/aAc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17127270	17127270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	204	543	1	ENST00000285071.4:c.584del	p.Gly195GlufsTer28	p.G195Efs*28	ENST00000285071	NM_144997.5	195	gGa/ga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	132	407	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120043	70120043	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	14	19	0	ENST00000245479.2:c.1049del	p.Pro350HisfsTer33	p.P350Hfs*33	ENST00000245479	NM_000346.3	349	Ccc/cc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78599498	78599498	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	169	403	0	ENST00000306801.3:c.170del	p.Thr57LysfsTer6	p.T57Kfs*6	ENST00000306801	NM_020761.2	57	aCa/aa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612377	1612377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	251	604	0	ENST00000344749.5:c.1642C>T	p.Arg548Cys	p.R548C	ENST00000344749	NM_001136139.2	548	Cgc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208031	5208031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	76	499	0	ENST00000357368.4:c.5680A>G	p.Ser1894Gly	p.S1894G	ENST00000357368	NM_002850.3	1894	Agc/Ggc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210704	5210704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	95	586	0	ENST00000357368.4:c.5347C>T	p.Arg1783Trp	p.R1783W	ENST00000357368	NM_002850.3	1783	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5216772	5216772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	91	233	0	ENST00000357368.4:c.4055G>A	p.Gly1352Asp	p.G1352D	ENST00000357368	NM_002850.3	1352	gGc/gAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288447	15288447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	53	373	0	ENST00000263388.2:c.4292T>C	p.Leu1431Pro	p.L1431P	ENST00000263388	NM_000435.2	1431	cTg/cCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288456	15288456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	60	338	0	ENST00000263388.2:c.4283G>A	p.Cys1428Tyr	p.C1428Y	ENST00000263388	NM_000435.2	1428	tGc/tAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	116	470	3	ENST00000263377.2:c.3061delC	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	175	485	2	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223328	36223328	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	298	723	0	ENST00000222270.7:c.5882delC	p.Pro1961LeufsTer26	p.P1961Lfs*26	ENST00000222270	NM_014727.1	1960	Ccc/cc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	97	553	3	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																														
SOS1	6654	MSKCC	GRCh37	2	39239433	39239433	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	186	573	0	ENST00000402219.2:c.2224delA	p.Ile742LeufsTer24	p.I742Lfs*24	ENST00000402219	NM_005633.3	742	Att/tt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170890	99170890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	224	536	0	ENST00000074304.5:c.1519G>A	p.Ala507Thr	p.A507T	ENST00000074304	NM_001134224.1	507	Gcc/Acc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	157	473	2	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662980	227662980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	119	551	0	ENST00000305123.5:c.475G>A	p.Ala159Thr	p.A159T	ENST00000305123	NM_005544.2	159	Gca/Aca																																																																														
ERG	2078	MSKCC	GRCh37	21	39817415	39817415	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148089492		P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	84	441	0	ENST00000288319.7:c.148C>T	p.Arg50Cys	p.R50C	ENST00000288319	NM_182918.3	50	Cgc/Tgc																																																																														
RAC2	5880	MSKCC	GRCh37	22	37637690	37637690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	95	511	0	ENST00000249071.6:c.44G>A	p.Gly15Asp	p.G15D	ENST00000249071	NM_002872.4	15	gGc/gAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566570	41566570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	56	282	0	ENST00000263253.7:c.4447T>C	p.Tyr1483His	p.Y1483H	ENST00000263253	NM_001429.3	1483	Tac/Cac																																																																														
MLH1	4292	MSKCC	GRCh37	3	37089123	37089125	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	176	412	0	ENST00000231790.2:c.1852_1854delAAG	p.Lys618del	p.K618del	ENST00000231790	NM_000249.3	615	ctGAAg/ctg																																																																														
MST1	4485	MSKCC	GRCh37	3	49722213	49722213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	161	392	0	ENST00000449682.2:c.1727G>A	p.Cys576Tyr	p.C576Y	ENST00000449682	NM_020998.3	576	tGt/tAt																																																																														
MST1	4485	MSKCC	GRCh37	3	49722791	49722791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	10	52	0	ENST00000449682.2:c.1448G>A	p.Gly483Asp	p.G483D	ENST00000449682	NM_020998.3	483	gGc/gAc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	123	302	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119642242	119642242	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs72546695		P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	97	467	0	ENST00000316626.5:c.455C>T	p.Thr152Met	p.T152M	ENST00000316626		152	aCg/aTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	146	392	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374697	149374697	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	88	503	0	ENST00000360632.3:c.397A>G	p.Thr133Ala	p.T133A	ENST00000360632	NM_015472.4	133	Acc/Gcc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55130038	55130038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	112	480	0	ENST00000257290.5:c.572C>T	p.Ala191Val	p.A191V	ENST00000257290	NM_006206.4	191	gCc/gTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106155778	106155779	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	73	416	0	ENST00000380013.4:c.685dupA	p.Thr229AsnfsTer25	p.T229Nfs*25	ENST00000380013	NM_001127208.2	227	gaa/gAaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	155	520	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1293896	1293896	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	144	712	0	ENST00000310581.5:c.1105A>G	p.Arg369Gly	p.R369G	ENST00000310581	NM_198253.2	369	Agg/Ggg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876532	35876532	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	67	450	0	ENST00000303115.3:c.1324G>T	p.Gly442Ter	p.G442*	ENST00000303115	NM_002185.3	442	Gga/Tga																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	116	404	1	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	186	534	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	100	260	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112155032	112155032	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	124	421	0	ENST00000257430.4:c.1307del	p.Asn436IlefsTer18	p.N436Ifs*18	ENST00000257430	NM_000038.5	435	Aaa/aa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638363	176638363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	135	638	0	ENST00000439151.2:c.2963C>A	p.Ser988Tyr	p.S988Y	ENST00000439151	NM_022455.4	988	tCt/tAt																																																																														
E2F3	1871	MSKCC	GRCh37	6	20488470	20488470	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147333935		P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	49	299	0	ENST00000346618.3:c.1126G>A	p.Ala376Thr	p.A376T	ENST00000346618	NM_001949.4	376	Gct/Act																																																																														
MET	4233	MSKCC	GRCh37	7	116417506	116417506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	47	346	0	ENST00000397752.3:c.3323C>T	p.Ala1108Val	p.A1108V	ENST00000397752	NM_000245.2	1108	gCt/gTt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739732	145739732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	110	578	0	ENST00000428558.2:c.1719G>T	p.Gln573His	p.Q573H	ENST00000428558	NM_004260.3	573	caG/caT																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	189	485	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412249	139412249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	104	645	0	ENST00000277541.6:c.1396A>G	p.Thr466Ala	p.T466A	ENST00000277541	NM_017617.3	466	Acc/Gcc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223533	53223533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	144	481	0	ENST00000375401.3:c.3826G>A	p.Glu1276Lys	p.E1276K	ENST00000375401	NM_004187.3	1276	Gag/Aag																																																																														
AR	367	MSKCC	GRCh37	X	66765088	66765088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	86	512	0	ENST00000374690.3:c.100A>G	p.Ile34Val	p.I34V	ENST00000374690	NM_000044.3	34	Atc/Gtc																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152858098	152858098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	97	564	0	ENST00000406277.2:c.517C>T	p.Arg173Trp	p.R173W	ENST00000406277	NM_152274.4	173	Cgg/Tgg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37056038	37056038	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0032718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	89	249	0	ENST00000231790.2:c.790+3A>C		p.X264_splice	ENST00000231790	NM_000249.3	264																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	120	364	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	10	503	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	9	390	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	8	453	1	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																																																														
TCEB1	6921	MSKCC	GRCh37	8	74858884	74858884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	14	490	0	ENST00000284811.8:c.320C>T	p.Ala107Val	p.A107V	ENST00000284811		107	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	55	251	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106169	27106170	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	65	383	0	ENST00000324856.7:c.5781dup	p.Lys1928Ter	p.K1928*	ENST00000324856	NM_006015.4	1927	gct/gcTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81927333	81927333	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	85	462	0	ENST00000359376.3:c.1006C>G	p.Leu336Val	p.L336V	ENST00000359376	NM_002661.3	336	Ctg/Gtg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119714	70119714	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	310	453	0	ENST00000245479.2:c.717del	p.Thr240ProfsTer13	p.T240Pfs*13	ENST00000245479	NM_000346.3	239	aCc/ac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243983	5243983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	51	530	0	ENST00000357368.4:c.1499G>A	p.Arg500Gln	p.R500Q	ENST00000357368	NM_002850.3	500	cGg/cAg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29092929	29092929	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	80	460	0	ENST00000328354.6:c.1055A>G	p.Asn352Ser	p.N352S	ENST00000328354	NM_007194.3	352	aAt/aGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	259	373	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	259	373	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	259	373	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348930	11348930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	254	379	0	ENST00000332029.2:c.406C>T	p.His136Tyr	p.H136Y	ENST00000332029	NM_003745.1	136	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	116	608	1	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	206	449	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	122	631	0	ENST00000269305.4:c.587G>C	p.Arg196Pro	p.R196P	ENST00000269305	NM_001126112.2	196	cGa/cCa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030645	48030645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	160	531	0	ENST00000234420.5:c.3259C>T	p.Pro1087Ser	p.P1087S	ENST00000234420	NM_000179.2	1087	Ccc/Tcc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729958	30729973	+	frameshift_variant	Frame_Shift_Del	DEL	AGATCGAGGGCGACCA	AGATCGAGGGCGACCA	-			P-0032725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	114	367	0	ENST00000359013.4:c.1554_1569del	p.Asp519LysfsTer19	p.D519Kfs*19	ENST00000359013	NM_001024847.2	518	agAGATCGAGGGCGACCA/ag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971205	21971206	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GA	GA	AT			P-0032725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	122	360	0	ENST00000304494.5:c.152_153delinsAT	p.Val51Asp	p.V51D	ENST00000304494	NM_000077.4	51	gTC/gAT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971205	21971206	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GA	GA	AT			P-0032725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	122	360	0	ENST00000304494.5:c.152_153delinsAT	p.Val51Asp	p.V51D	ENST00000304494	NM_000077.4	51	gTC/gAT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971205	21971206	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GA	GA	AT			P-0032725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	122	360	0	ENST00000304494.5:c.152_153delinsAT	p.Val51Asp	p.V51D	ENST00000304494	NM_000077.4	51	gTC/gAT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	213	427	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	326	566	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0032726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	62	258	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	83	259	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga																																																																														
TEK	7010	MSKCC	GRCh37	9	27157924	27157924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	509	474	2	ENST00000380036.4:c.148C>T	p.Arg50Cys	p.R50C	ENST00000380036	NM_000459.3	50	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0032728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	164	579	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	29543637	29543637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	77	468	0	ENST00000389048.3:c.1526C>T	p.Ala509Val	p.A509V	ENST00000389048	NM_004304.4	509	gCc/gTc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572556	64572556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	81	468	1	ENST00000337652.1:c.1315G>A	p.Val439Met	p.V439M	ENST00000337652	NM_130803.2	439	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436390	49436390	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	81	423	0	ENST00000301067.7:c.5821A>G	p.Met1941Val	p.M1941V	ENST00000301067	NM_003482.3	1941	Atg/Gtg																																																																														
CDH1	999	MSKCC	GRCh37	16	68846150	68846171	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTCAATCCCACCACGGTAAT	TCTTCAATCCCACCACGGTAAT	-			P-0032738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	42	485	0	ENST00000261769.5:c.1124_1137+8del		p.X375_splice	ENST00000261769	NM_004360.3	375																																																																															
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	93	617	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	91	671	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	58	376	0				ENST00000310581	NM_198253.2																																																																																
KMT2B	9757	MSKCC	GRCh37	19	36214019	36214019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	85	772	0	ENST00000222270.7:c.2845C>T	p.Pro949Ser	p.P949S	ENST00000222270	NM_014727.1	949	Ccc/Tcc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139403352	139403352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	165	571	0	ENST00000277541.6:c.3141C>G	p.Cys1047Trp	p.C1047W	ENST00000277541	NM_017617.3	1047	tgC/tgG																																																																														
NF2	4771	MSKCC	GRCh37	22	30057302	30057302	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	27	397	0	ENST00000338641.4:c.784C>T	p.Arg262Ter	p.R262*	ENST00000338641	NM_000268.3	262	Cga/Tga																																																																														
SETD2	29072	MSKCC	GRCh37	3	47155365	47155365	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	39	350	0	ENST00000409792.3:c.4715+1G>T		p.X1572_splice	ENST00000409792	NM_014159.6	1572																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	79	374	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068922	30068922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	69	486	2	ENST00000331968.5:c.2007G>A	p.Met669Ile	p.M669I	ENST00000331968	NM_002742.2	669	atG/atA																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068938	30068938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	65	481	0	ENST00000331968.5:c.1991G>A	p.Gly664Glu	p.G664E	ENST00000331968	NM_002742.2	664	gGa/gAa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068981	30068981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	52	450	0	ENST00000331968.5:c.1948G>A	p.Glu650Lys	p.E650K	ENST00000331968	NM_002742.2	650	Gag/Aag																																																																														
MAX	4149	MSKCC	GRCh37	14	65560535	65560535	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0032748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	71	307	0	ENST00000358664.4:c.64-2A>T		p.X22_splice	ENST00000358664	NM_002382.4	22																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713871	30713871	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	43	443	0	ENST00000359013.4:c.1271G>T	p.Gly424Val	p.G424V	ENST00000359013	NM_001024847.2	424	gGg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	37	360	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0032749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	90	445	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267383	198267383	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	57	495	0	ENST00000335508.6:c.1974G>C	p.Trp658Cys	p.W658C	ENST00000335508	NM_012433.2	658	tgG/tgC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874092	151874093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	69	484	0	ENST00000262189.6:c.8445dupA	p.Ser2816IlefsTer6	p.S2816Ifs*6	ENST00000262189	NM_170606.2	2815	-/A																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416774	416774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	57	272	0	ENST00000399788.2:c.3776G>C	p.Arg1259Thr	p.R1259T	ENST00000399788	NM_001042603.1	1259	aGa/aCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	129	387	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	100	261	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	112	223	1	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0032750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	130	335	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114917797	114917798	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0032750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	76	272	0	ENST00000543371.1:c.1290_1291dup	p.Arg431LysfsTer61	p.R431Kfs*61	ENST00000543371	NM_001198531.1	429	-/AA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125323	47125323	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	194	442	0	ENST00000409792.3:c.5947G>T	p.Glu1983Ter	p.E1983*	ENST00000409792	NM_014159.6	1983	Gaa/Taa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437273	52437273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	250	528	0	ENST00000460680.1:c.1771G>A	p.Gly591Ser	p.G591S	ENST00000460680	NM_004656.3	591	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	182	603	0	ENST00000269305.4:c.421T>G	p.Cys141Gly	p.C141G	ENST00000269305	NM_001126112.2	141	Tgc/Ggc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023249	27023249	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	44	113	0	ENST00000324856.7:c.355G>T	p.Glu119Ter	p.E119*	ENST00000324856	NM_006015.4	119	Gag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610093	10610093	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	143	499	1	ENST00000171111.5:c.617A>G	p.Tyr206Cys	p.Y206C	ENST00000171111	NM_203500.1	206	tAc/tGc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0032754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	79	296	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	121	509	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	14	392	1	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046356	128046356	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	34	394	0	ENST00000285398.2:c.907A>C	p.Asn303His	p.N303H	ENST00000285398	NM_000122.1	303	Aac/Cac																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660087	227660087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	66	430	0	ENST00000305123.5:c.3368C>A	p.Ala1123Glu	p.A1123E	ENST00000305123	NM_005544.2	1123	gCa/gAa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081573	143081573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	16	455	0	ENST00000262992.4:c.1501C>T	p.Pro501Ser	p.P501S	ENST00000262992	NM_001101669.1	501	Ccc/Tcc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	154	348	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023699	27023699	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	35	290	0	ENST00000324856.7:c.805C>T	p.Gln269Ter	p.Q269*	ENST00000324856	NM_006015.4	269	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690819	89690820	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	202	350	0	ENST00000371953.3:c.227_228del	p.Tyr76Ter	p.Y76*	ENST00000371953	NM_000314.4	76	TAt/t																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	61	213	0	ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142275399	142275399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202162034		P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	66	310	0	ENST00000350721.4:c.1904G>A	p.Arg635Gln	p.R635Q	ENST00000350721	NM_001184.3	635	cGa/cAa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	56	376	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517445	157517445	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	79	355	0	ENST00000346085.5:c.4009C>T	p.Arg1337Ter	p.R1337*	ENST00000346085	NM_020732.3	1337	Cga/Tga																																																																														
CBFB	865	MSKCC	GRCh37	16	67063359	67063359	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	55	205	0	ENST00000412916.2:c.54del	p.Phe18LeufsTer4	p.F18Lfs*4	ENST00000412916		17	Ttt/tt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771903	135771903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	100	525	0	ENST00000298552.3:c.3214G>A	p.Ala1072Thr	p.A1072T	ENST00000298552	NM_001162426.1	1072	Gcc/Acc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2125894	2125894	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	33	528	0	ENST00000219476.3:c.2639+1G>A		p.X880_splice	ENST00000219476	NM_000548.3	880																																																																															
MGA	23269	MSKCC	GRCh37	15	42042077	42042077	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	94	442	0	ENST00000219905.7:c.6276delA	p.Ala2093ProfsTer9	p.A2093Pfs*9	ENST00000219905	NM_001164273.1	2091	gAa/ga																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682810	190682810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	83	373	0	ENST00000441310.2:c.492delA	p.Lys164AsnfsTer6	p.K164Nfs*6	ENST00000441310	NM_000534.4	162	gcA/gc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	123	485	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660999	227660999	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	67	440	0	ENST00000305123.5:c.2456del	p.Gly819AspfsTer124	p.G819Dfs*124	ENST00000305123	NM_005544.2	819	gGa/ga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11270924	11270924	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	41	392	0	ENST00000361445.4:c.3601C>T	p.Arg1201Ter	p.R1201*	ENST00000361445	NM_004958.3	1201	Cga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	128	657	1	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	97	508	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	155	442	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402714	139402714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	127	551	0	ENST00000277541.6:c.3295G>A	p.Val1099Met	p.V1099M	ENST00000277541	NM_017617.3	1099	Gtg/Atg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	84	527	2	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821381	72821382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	53	378	0	ENST00000268489.5:c.10793dup	p.Pro3599SerfsTer67	p.P3599Sfs*67	ENST00000268489	NM_006885.3	3598	cct/ccCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099941	27099941	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	168	447	1	ENST00000324856.7:c.3820G>T	p.Gly1274Ter	p.G1274*	ENST00000324856	NM_006015.4	1274	Gga/Tga																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45796213	45796213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	15	346	0	ENST00000372115.3:c.1451A>G	p.Gln484Arg	p.Q484R	ENST00000372115	NM_001048171.1	484	cAg/cGg																																																																														
NUF2	83540	MSKCC	GRCh37	1	163297290	163297290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	108	446	0	ENST00000271452.3:c.136C>T	p.His46Tyr	p.H46Y	ENST00000271452	NM_145697.2	46	Cac/Tac																																																																														
PAK1	5058	MSKCC	GRCh37	11	77051783	77051783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	114	420	0	ENST00000356341.3:c.1024G>T	p.Val342Phe	p.V342F	ENST00000356341	NM_002576.4	342	Gtt/Ttt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557816	21557816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	145	577	0	ENST00000382592.4:c.2029G>A	p.Gly677Ser	p.G677S	ENST00000382592	NM_014572.2	677	Ggt/Agt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877434	28877434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	23	400	0	ENST00000282397.4:c.3887G>A	p.Ser1296Asn	p.S1296N	ENST00000282397	NM_002019.4	1296	aGc/aAc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134497	2134497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	80	575	0	ENST00000219476.3:c.4274G>T	p.Gly1425Val	p.G1425V	ENST00000219476	NM_000548.3	1425	gGg/gTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136314	2136315	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGGCCTGGACGTGTGTGGTGAGGAAGGCCAGTTCACCTACTGCTGGCACGAT			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	61	578	0	ENST00000219476.3:c.4808_4809insAGGCCAGTTCACCTACTGCTGGCACGATGAGGCCTGGACGTGTGTGGTGAGGA	p.Asp1603GlufsTer40	p.D1603Efs*40	ENST00000219476	NM_000548.3	1595	gga/gGAGGCCTGGACGTGTGTGGTGAGGAAGGCCAGTTCACCTACTGCTGGCACGATga																																																																														
MSI2	124540	MSKCC	GRCh37	17	55693436	55693436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	42	441	0	ENST00000284073.2:c.643G>T	p.Gly215Trp	p.G215W	ENST00000284073	NM_138962.2	215	Ggg/Tgg																																																																														
STK11	6794	MSKCC	GRCh37	19	1218430	1218430	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	63	471	0	ENST00000326873.7:c.305T>C	p.Leu102Pro	p.L102P	ENST00000326873	NM_000455.4	102	cTg/cCg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11015633	11015634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	104	396	0	ENST00000327064.4:c.235_236dup	p.Phe80SerfsTer46	p.F80Sfs*46	ENST00000327064	NM_199141.1	76	gat/gaTGt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79968139	79968142	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	146	590	0	ENST00000265081.6:c.873_876del	p.Val292MetfsTer15	p.V292Mfs*15	ENST00000265081	NM_002439.4	290	cTGTTt/ct																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405795	157405795	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	14	263	0	ENST00000346085.5:c.2038-1G>T		p.X680_splice	ENST00000346085	NM_020732.3	680																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38287268	38287268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	92	555	0	ENST00000425967.3:c.389G>A	p.Gly130Asp	p.G130D	ENST00000425967	NM_001174067.1	130	gGc/gAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402824	139402824	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	114	488	0	ENST00000277541.6:c.3185G>A	p.Trp1062Ter	p.W1062*	ENST00000277541	NM_017617.3	1062	tGg/tAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418378	139418378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	131	544	0	ENST00000277541.6:c.194G>A	p.Ser65Asn	p.S65N	ENST00000277541	NM_017617.3	65	aGc/aAc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222499	53222499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	106	563	0	ENST00000375401.3:c.4333C>T	p.Arg1445Cys	p.R1445C	ENST00000375401	NM_004187.3	1445	Cgt/Tgt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136340	2136340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	42	550	0	ENST00000219476.3:c.4809C>A	p.Asp1603Glu	p.D1603E	ENST00000219476	NM_000548.3	1603	gaC/gaA																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	29	520	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121242	29121242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	35	679	0	ENST00000328354.6:c.433C>T	p.Arg145Trp	p.R145W	ENST00000328354	NM_007194.3	145	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	26	488	0	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	24	396	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	51	614	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
WT1	7490	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	32	524	0	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56864491	56864491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	40	547	0	ENST00000308159.5:c.979C>T	p.Arg327Cys	p.R327C	ENST00000308159	NM_014669.4	327	Cgc/Tgc																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2493197	2493197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145758620		P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	36	579	0	ENST00000355716.4:c.637G>A	p.Val213Ile	p.V213I	ENST00000355716	NM_003820.2	213	Gtc/Atc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538941	187538941	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	29	408	2	ENST00000441802.2:c.8799delA	p.Gly2934ValfsTer3	p.G2934Vfs*3	ENST00000441802	NM_005245.3	2933	caA/ca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	16	295	0	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																																																														
LYN	4067	MSKCC	GRCh37	8	56910960	56910960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	46	566	0	ENST00000519728.1:c.1106G>A	p.Arg369Gln	p.R369Q	ENST00000519728	NM_002350.3	369	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29683558	29683558	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	13	295	0	ENST00000358273.4:c.7701del	p.Met2569Ter	p.M2569*	ENST00000358273	NM_001042492.2	2566	Ccc/cc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38272115	38272115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	38	563	0	ENST00000425967.3:c.2103G>T	p.Glu701Asp	p.E701D	ENST00000425967	NM_001174067.1	701	gaG/gaT																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	44	661	4	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732986	74732986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	26	339	0	ENST00000359995.5:c.257G>T	p.Arg86Leu	p.R86L	ENST00000359995	NM_001195427.1	86	cGg/cTg																																																																														
HRAS	3265	MSKCC	GRCh37	11	533595	533595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	34	654	0	ENST00000311189.7:c.308T>C	p.Val103Ala	p.V103A	ENST00000311189		103	gTg/gCg																																																																														
MCL1	4170	MSKCC	GRCh37	1	150550901	150550901	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	38	430	0	ENST00000369026.2:c.755A>G	p.His252Arg	p.H252R	ENST00000369026	NM_021960.4	252	cAt/cGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420972	49420972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	25	371	1	ENST00000301067.7:c.14777C>T	p.Ala4926Val	p.A4926V	ENST00000301067	NM_003482.3	4926	gCc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433136	49433136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	40	594	0	ENST00000301067.7:c.8235G>T	p.Lys2745Asn	p.K2745N	ENST00000301067	NM_003482.3	2745	aaG/aaT																																																																														
TBX3	6926	MSKCC	GRCh37	12	115110108	115110108	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	34	634	0	ENST00000257566.3:c.1771-1G>T		p.X591_splice	ENST00000257566	NM_016569.3	591																																																																															
SETD8	387893	MSKCC	GRCh37	12	123880898	123880898	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	26	329	0	ENST00000330479.4:c.516A>C	p.Gln172His	p.Q172H	ENST00000330479	NM_020382.3	172	caA/caC																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611427	28611427	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	27	344	0	ENST00000241453.7:c.1206-2A>C		p.X402_splice	ENST00000241453	NM_004119.2	402																																																																															
FLT1	2321	MSKCC	GRCh37	13	29008234	29008234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	27	500	0	ENST00000282397.4:c.637G>T	p.Gly213Trp	p.G213W	ENST00000282397	NM_002019.4	213	Ggg/Tgg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066864	30066864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	33	494	0	ENST00000331968.5:c.2267G>T	p.Arg756Met	p.R756M	ENST00000331968	NM_002742.2	756	aGg/aTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500289	99500289	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	37	512	0	ENST00000268035.6:c.3723-1G>T		p.X1241_splice	ENST00000268035	NM_000875.3	1241																																																																															
NUP93	9688	MSKCC	GRCh37	16	56870512	56870512	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	17	328	0	ENST00000308159.5:c.1783-1G>T		p.X595_splice	ENST00000308159	NM_014669.4	595																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37863243	37863243	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	60	478	0	ENST00000269571.5:c.74T>C	p.Val25Ala	p.V25A	ENST00000269571		25	gTg/gCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271478	15271478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	48	865	0	ENST00000263388.2:c.6961G>A	p.Ala2321Thr	p.A2321T	ENST00000263388	NM_000435.2	2321	Gcc/Acc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290259	15290259	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	44	749	0	ENST00000263388.2:c.3376T>C	p.Cys1126Arg	p.C1126R	ENST00000263388	NM_000435.2	1126	Tgt/Cgt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367884	15367884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	42	645	1	ENST00000263377.2:c.1442C>T	p.Ala481Val	p.A481V	ENST00000263377	NM_058243.2	481	gCc/gTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902121	50902121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs9282830		P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	23	420	1	ENST00000440232.2:c.13C>T	p.Arg5Trp	p.R5W	ENST00000440232	NM_002691.3	5	Cgg/Tgg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028154	48028154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	20	352	0	ENST00000234420.5:c.3032T>C	p.Ile1011Thr	p.I1011T	ENST00000234420	NM_000179.2	1011	aTt/aCt																																																																														
CASP8	841	MSKCC	GRCh37	2	202149925	202149925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	36	591	1	ENST00000358485.4:c.1366G>T	p.Ala456Ser	p.A456S	ENST00000358485	NM_001080125.1	456	Gct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40911130	40911130	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	20	378	0	ENST00000373198.4:c.2175del	p.Ala726HisfsTer8	p.A726Hfs*8	ENST00000373198	NM_133170.3	725	aaA/aa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62324324	62324324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	36	602	0	ENST00000508582.2:c.2891C>A	p.Ala964Asp	p.A964D	ENST00000508582		964	gCt/gAt																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656816	45656816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	28	482	0	ENST00000407780.3:c.340C>A	p.Leu114Met	p.L114M	ENST00000407780	NM_001283052.1	114	Ctg/Atg																																																																														
EP300	2033	MSKCC	GRCh37	22	41513293	41513293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	31	519	1	ENST00000263253.7:c.197C>T	p.Thr66Ile	p.T66I	ENST00000263253	NM_001429.3	66	aCa/aTa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190790	185190790	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	36	547	0	ENST00000265026.3:c.1674del	p.Thr559ProfsTer48	p.T559Pfs*48	ENST00000265026	NM_004721.4	557	atC/at																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151555	55151555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	28	494	0	ENST00000257290.5:c.2341C>A	p.Leu781Ile	p.L781I	ENST00000257290	NM_006206.4	781	Ctc/Atc																																																																														
TET2	54790	MSKCC	GRCh37	4	106158352	106158352	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	19	304	0	ENST00000380013.4:c.3253A>G	p.Thr1085Ala	p.T1085A	ENST00000380013	NM_001127208.2	1085	Aca/Gca																																																																														
TERT	7015	MSKCC	GRCh37	5	1278878	1278878	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	38	574	0	ENST00000310581.5:c.2164del	p.Gln722ArgfsTer45	p.Q722Rfs*45	ENST00000310581	NM_198253.2	722	Cag/ag																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754226	57754226	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	29	369	0	ENST00000274289.3:c.625G>T	p.Gly209Trp	p.G209W	ENST00000274289	NM_006622.3	209	Ggg/Tgg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590490	67590490	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	15	174	0	ENST00000274335.5:c.1552G>T	p.Glu518Ter	p.E518*	ENST00000274335		518	Gag/Tag																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449570	149449570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	44	587	0	ENST00000286301.3:c.1376G>T	p.Ser459Ile	p.S459I	ENST00000286301	NM_005211.3	459	aGc/aTc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265394	152265394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	29	385	1	ENST00000206249.3:c.847G>A	p.Ala283Thr	p.A283T	ENST00000206249	NM_000125.3	283	Gct/Act																																																																														
CARD11	84433	MSKCC	GRCh37	7	2978318	2978318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	30	506	0	ENST00000396946.4:c.1012G>A	p.Asp338Asn	p.D338N	ENST00000396946	NM_032415.4	338	Gac/Aac																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935668	13935668	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	35	417	0	ENST00000405192.2:c.1188A>C	p.Glu396Asp	p.E396D	ENST00000405192	NM_001163147.1	396	gaA/gaC																																																																														
ETV1	2115	MSKCC	GRCh37	7	13940442	13940442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	37	392	0	ENST00000405192.2:c.1064A>G	p.Gln355Arg	p.Q355R	ENST00000405192	NM_001163147.1	355	cAg/cGg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148512628	148512628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	19	269	0	ENST00000320356.2:c.1516G>A	p.Ala506Thr	p.A506T	ENST00000320356	NM_004456.4	506	Gca/Aca																																																																														
TEK	7010	MSKCC	GRCh37	9	27180318	27180318	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	29	491	0	ENST00000380036.4:c.982G>T	p.Gly328Ter	p.G328*	ENST00000380036	NM_000459.3	328	Gga/Tga																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300870	137300870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	40	644	1	ENST00000481739.1:c.515G>A	p.Arg172His	p.R172H	ENST00000481739	NM_002957.4	172	cGc/cAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390535	139390535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	46	671	0	ENST00000277541.6:c.7656G>T	p.Glu2552Asp	p.E2552D	ENST00000277541	NM_017617.3	2552	gaG/gaT																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659912	227659912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	66	560	0	ENST00000305123.5:c.3543C>A	p.Asp1181Glu	p.D1181E	ENST00000305123	NM_005544.2	1181	gaC/gaA																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265049	46265049	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	15	480	0	ENST00000371998.3:c.1919C>G	p.Ser640Cys	p.S640C	ENST00000371998		640	tCc/tGc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169953136	169953136	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	68	372	0	ENST00000295797.4:c.220G>T	p.Glu74Ter	p.E74*	ENST00000295797	NM_002740.5	74	Gaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860622	151860622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	48	499	0	ENST00000262189.6:c.10040A>G	p.Asn3347Ser	p.N3347S	ENST00000262189	NM_170606.2	3347	aAt/aGt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746032	162746032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	81	328	0	ENST00000367921.3:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000367921	NM_006182.2	719	Ggt/Agt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112915753	112915753	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	38	318	0	ENST00000351677.2:c.1026G>A	p.Trp342Ter	p.W342*	ENST00000351677	NM_002834.3	342	tgG/tgA																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66735644	66735644	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	110	377	1	ENST00000307102.5:c.465del	p.Lys156ArgfsTer11	p.K156Rfs*11	ENST00000307102	NM_002755.3	155	ctG/ct																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900720	3900720	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	33	488	0	ENST00000262367.5:c.376G>T	p.Gly126Ter	p.G126*	ENST00000262367	NM_004380.2	126	Gga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577585	7577600	+	frameshift_variant	Frame_Shift_Del	DEL	GATGGTGGTACAGTCA	GATGGTGGTACAGTCA	-			P-0032814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	32	419	0	ENST00000269305.4:c.681_696del	p.Asp228ThrfsTer14	p.D228Tfs*14	ENST00000269305	NM_001126112.2	227	tcTGACTGTACCACCATC/tc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188823	32188823	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs8192585		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	21	739	1	ENST00000375023.3:c.731C>T	p.Ser244Leu	p.S244L	ENST00000375023	NM_004557.3	244	tCg/tTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133241895	133241895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	21	560	1	ENST00000320574.5:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000320574	NM_006231.2	821	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	189	721	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276316	15276316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372834264		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	33	731	0	ENST00000263388.2:c.5678G>A	p.Arg1893Gln	p.R1893Q	ENST00000263388	NM_000435.2	1893	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	127	597	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	171	596	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	69	499	0	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244872	46244872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	37	631	1	ENST00000334344.6:c.2966C>T	p.Ser989Leu	p.S989L	ENST00000334344	NM_152641.2	989	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	19	703	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916248	9916248	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	19	470	0	ENST00000330684.3:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000330684	NM_001134407.1	681	Cga/Tga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247028	53247028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	22	742	0	ENST00000375401.3:c.472G>A	p.Glu158Lys	p.E158K	ENST00000375401	NM_004187.3	158	Gaa/Aaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134252	11134252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	37	624	0	ENST00000344626.4:c.2918G>A	p.Arg973Gln	p.R973Q	ENST00000344626	NM_003072.3	973	cGg/cAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65335121	65335121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	43	577	0	ENST00000342505.4:c.520C>T	p.Arg174Ter	p.R174*	ENST00000342505	NM_002227.2	174	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112179011	112179011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	17	297	0	ENST00000257430.4:c.7720C>A	p.Leu2574Ile	p.L2574I	ENST00000257430	NM_000038.5	2574	Ctt/Att																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	82	684	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	88	615	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	36	446	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	30143216	30143216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	11	525	0	ENST00000389048.3:c.310C>T	p.Pro104Ser	p.P104S	ENST00000389048	NM_004304.4	104	Ccg/Tcg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	41	728	0	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133219579	133219579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	13	527	2	ENST00000320574.5:c.4555C>T	p.Arg1519Cys	p.R1519C	ENST00000320574	NM_006231.2	1519	Cgc/Tgc																																																																														
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	18	327	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001374	150001374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	70	738	1	ENST00000253339.5:c.2230C>T	p.Arg744Ter	p.R744*	ENST00000253339		744	Cga/Tga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923805	39923805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	31	794	0	ENST00000378444.4:c.3286G>A	p.Glu1096Lys	p.E1096K	ENST00000378444	NM_001123385.1	1096	Gag/Aag																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201702	67201702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	30	654	0	ENST00000312629.5:c.1003G>A	p.Asp335Asn	p.D335N	ENST00000312629	NM_003952.2	335	Gac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	45	577	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	24	326	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374317	31374317	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	13	423	0	ENST00000328111.2:c.316C>T	p.Arg106Ter	p.R106*	ENST00000328111	NM_006892.3	106	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142188288	142188288	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1470834016		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	67	458	0	ENST00000350721.4:c.6443G>A	p.Arg2148Gln	p.R2148Q	ENST00000350721	NM_001184.3	2148	cGa/cAa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131944865	131944865	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	10	252	0	ENST00000265335.6:c.2886G>T	p.Glu962Asp	p.E962D	ENST00000265335		962	gaG/gaT																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515141	103515141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	16	358	0	ENST00000355739.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000355739	NM_000123.3	548	Gaa/Aaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650710	67650710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	58	606	0	ENST00000264010.4:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000264010	NM_006565.3	339	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939417	76939417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	44	935	1	ENST00000373344.5:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000373344	NM_000489.3	444	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693002	89693003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	33	425	0	ENST00000371953.3:c.491dupA	p.Val166SerfsTer14	p.V166Sfs*14	ENST00000371953	NM_000314.4	162	-/A																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023019	150023019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	168	754	0	ENST00000253339.5:c.244C>T	p.Arg82Ter	p.R82*	ENST00000253339		82	Cga/Tga																																																																														
AR	367	MSKCC	GRCh37	X	66943532	66943532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143040492		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	43	434	0	ENST00000374690.3:c.2612C>T	p.Ala871Val	p.A871V	ENST00000374690	NM_000044.3	871	gCg/gTg																																																																														
ALK	238	MSKCC	GRCh37	2	29430047	29430047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	20	696	0	ENST00000389048.3:c.3928A>G	p.Thr1310Ala	p.T1310A	ENST00000389048	NM_004304.4	1310	Aca/Gca																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	133	406	1	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112176873	112176873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	27	466	1	ENST00000257430.4:c.5582C>A	p.Ser1861Tyr	p.S1861Y	ENST00000257430	NM_000038.5	1861	tCt/tAt																																																																														
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	168	578	1	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10267124	10267124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	26	595	0	ENST00000340748.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000340748		432	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55980297	55980297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	54	540	0	ENST00000263923.4:c.794C>T	p.Ser265Leu	p.S265L	ENST00000263923	NM_002253.2	265	tCg/tTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627773	187627773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200050180		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	61	577	1	ENST00000441802.2:c.3209G>A	p.Arg1070Gln	p.R1070Q	ENST00000441802	NM_005245.3	1070	cGa/cAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	53	276	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37865572	37865572	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	31	639	0	ENST00000269571.5:c.441G>T	p.Glu147Asp	p.E147D	ENST00000269571		147	gaG/gaT																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780684	9780684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	29	773	0	ENST00000377346.4:c.1486C>T	p.Arg496Ter	p.R496*	ENST00000377346	NM_005026.3	496	Cga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467865	66467865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	61	446	0	ENST00000273854.3:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000273854	NM_004439.5	135	cGg/cAg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6031648	6031648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116314131		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	25	499	0	ENST00000265849.7:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000265849	NM_000535.5	315	cGa/cAa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	12	392	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775985	9775985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201492009		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	30	677	0	ENST00000377346.4:c.449C>T	p.Ala150Val	p.A150V	ENST00000377346	NM_005026.3	150	gCg/gTg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582439	119582439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	14	241	0	ENST00000316626.5:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000316626		321	cGa/cAa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751902	57751902	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	41	557	0	ENST00000274289.3:c.1335T>G	p.Ile445Met	p.I445M	ENST00000274289	NM_006622.3	445	atT/atG																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858253	59858253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	38	691	0	ENST00000259008.2:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000259008	NM_032043.2	581	cGa/cAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972440	81972440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	30	503	0	ENST00000359376.3:c.3233G>A	p.Arg1078Gln	p.R1078Q	ENST00000359376	NM_002661.3	1078	cGa/cAa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741493	17741493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	33	593	0	ENST00000250003.3:c.164C>T	p.Ala55Val	p.A55V	ENST00000250003	NM_002478.4	55	gCg/gTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	63	273	0	ENST00000371953.3:c.176C>A	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715847	117715847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	47	440	0	ENST00000368508.3:c.911G>T	p.Arg304Ile	p.R304I	ENST00000368508	NM_002944.2	304	aGa/aTa																																																																														
SMO	6608	MSKCC	GRCh37	7	128845507	128845507	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	36	823	0	ENST00000249373.3:c.804C>A	p.Phe268Leu	p.F268L	ENST00000249373	NM_005631.4	268	ttC/ttA																																																																														
POLE	5426	MSKCC	GRCh37	12	133220476	133220476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	26	697	0	ENST00000320574.5:c.4237G>A	p.Glu1413Lys	p.E1413K	ENST00000320574	NM_006231.2	1413	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032002	10032002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	16	695	0	ENST00000330684.3:c.821C>T	p.Ser274Leu	p.S274L	ENST00000330684	NM_001134407.1	274	tCg/tTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120496243	120496243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	98	585	0	ENST00000256646.2:c.2288C>T	p.Ser763Leu	p.S763L	ENST00000256646	NM_024408.3	763	tCg/tTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	33	569	1	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542861	187542861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	34	457	1	ENST00000441802.2:c.4879C>T	p.Arg1627Ter	p.R1627*	ENST00000441802	NM_005245.3	1627	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120461167	120461167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	16	400	0	ENST00000256646.2:c.5791C>T	p.Arg1931Cys	p.R1931C	ENST00000256646	NM_024408.3	1931	Cgc/Tgc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158212	47158212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	48	516	0	ENST00000409792.3:c.4487G>A	p.Arg1496Gln	p.R1496Q	ENST00000409792	NM_014159.6	1496	cGa/cAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55961109	55961109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	40	663	0	ENST00000263923.4:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000263923	NM_002253.2	944	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	45	604	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685312	86685312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	16	186	0	ENST00000274376.6:c.3028C>T	p.Arg1010Ter	p.R1010*	ENST00000274376	NM_002890.2	1010	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	86	455	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																																																														
EP300	2033	MSKCC	GRCh37	22	41565543	41565543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	23	525	0	ENST00000263253.7:c.4209C>A	p.Phe1403Leu	p.F1403L	ENST00000263253	NM_001429.3	1403	ttC/ttA																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946809	17946809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	133	799	1	ENST00000458235.1:c.1838G>A	p.Arg613Gln	p.R613Q	ENST00000458235	NM_000215.3	613	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521544	8521544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	21	483	0	ENST00000356435.5:c.694C>T	p.Arg232Cys	p.R232C	ENST00000356435		232	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539690	187539690	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	49	404	1	ENST00000441802.2:c.8050G>T	p.Glu2684Ter	p.E2684*	ENST00000441802	NM_005245.3	2684	Gaa/Taa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763428	59763428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	28	778	1	ENST00000259008.2:c.2674C>A	p.Leu892Ile	p.L892I	ENST00000259008	NM_032043.2	892	Ctt/Att																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888102	81888102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	36	491	0	ENST00000359376.3:c.247G>A	p.Glu83Lys	p.E83K	ENST00000359376	NM_002661.3	83	Gag/Aag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950099	38950099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	20	569	0	ENST00000357387.3:c.3851C>T	p.Ser1284Leu	p.S1284L	ENST00000357387	NM_152756.3	1284	tCg/tTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670234	134670234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	13	427	0	ENST00000398015.3:c.145G>A	p.Asp49Asn	p.D49N	ENST00000398015	NM_004441.4	49	Gat/Aat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105736	27105736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	23	404	1	ENST00000324856.7:c.5347G>T	p.Glu1783Ter	p.E1783*	ENST00000324856	NM_006015.4	1783	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	26	368	1	ENST00000263967.3:c.344G>A	p.Arg115Gln	p.R115Q	ENST00000263967	NM_006218.2	115	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830535	72830535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	39	750	0	ENST00000268489.5:c.6046G>A	p.Glu2016Lys	p.E2016K	ENST00000268489	NM_006885.3	2016	Gag/Aag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609786	117609786	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs141670885		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	26	690	1	ENST00000368508.3:c.6913G>T	p.Glu2305Ter	p.E2305*	ENST00000368508	NM_002944.2	2305	Gaa/Taa																																																																														
MED12	9968	MSKCC	GRCh37	X	70343020	70343020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	81	687	0	ENST00000374080.3:c.1561C>T	p.Arg521Cys	p.R521C	ENST00000374080		521	Cgt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133212572	133212572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	68	557	0	ENST00000320574.5:c.5717C>A	p.Ser1906Tyr	p.S1906Y	ENST00000320574	NM_006231.2	1906	tCt/tAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930610	32930610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	21	423	0	ENST00000380152.3:c.7481G>A	p.Arg2494Gln	p.R2494Q	ENST00000380152		2494	cGa/cAa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740436	58740436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	56	591	1	ENST00000305921.3:c.1341G>T	p.Glu447Asp	p.E447D	ENST00000305921	NM_003620.3	447	gaG/gaT																																																																														
AXL	558	MSKCC	GRCh37	19	41765472	41765472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	25	608	1	ENST00000301178.4:c.2348C>T	p.Ser783Leu	p.S783L	ENST00000301178	NM_021913.4	783	tCg/tTg																																																																														
ATR	545	MSKCC	GRCh37	3	142176504	142176504	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	21	477	2	ENST00000350721.4:c.7597C>T	p.Arg2533Ter	p.R2533*	ENST00000350721	NM_001184.3	2533	Cga/Tga																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421355	12421355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	79	790	0	ENST00000287820.6:c.235G>A	p.Glu79Lys	p.E79K	ENST00000287820	NM_015869.4	79	Gaa/Aaa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528078	103528078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	13	317	0	ENST00000355739.4:c.3386C>T	p.Ser1129Leu	p.S1129L	ENST00000355739	NM_000123.3	1129	tCg/tTg																																																																														
NUF2	83540	MSKCC	GRCh37	1	163306558	163306558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	29	507	0	ENST00000271452.3:c.355C>T	p.Arg119Trp	p.R119W	ENST00000271452	NM_145697.2	119	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828503	72828503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	55	712	0	ENST00000268489.5:c.8078G>A	p.Arg2693Gln	p.R2693Q	ENST00000268489	NM_006885.3	2693	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672800	86672800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	116	373	0	ENST00000274376.6:c.2287G>A	p.Glu763Lys	p.E763K	ENST00000274376	NM_002890.2	763	Gaa/Aaa																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538990	23538990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	23	697	0	ENST00000380871.4:c.449C>T	p.Ser150Leu	p.S150L	ENST00000380871	NM_006167.3	150	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108165729	108165729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	34	408	1	ENST00000278616.4:c.4852C>T	p.Arg1618Ter	p.R1618*	ENST00000278616	NM_000051.3	1618	Cga/Tga																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94180441	94180441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139461096		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	29	629	0	ENST00000323929.3:c.1727G>A	p.Arg576Gln	p.R576Q	ENST00000323929	NM_005591.3	576	cGa/cAa																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944983	31944983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	57	760	0	ENST00000340398.3:c.118C>T	p.Arg40Cys	p.R40C	ENST00000340398	NM_001013699.2	40	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928067	178928067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	150	672	0	ENST00000263967.3:c.1345C>T	p.Pro449Ser	p.P449S	ENST00000263967	NM_006218.2	449	Cct/Tct																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197721	66197721	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	26	526	0	ENST00000273854.3:c.2978C>A	p.Ser993Ter	p.S993*	ENST00000273854	NM_004439.5	993	tCa/tAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965644	93965644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	22	484	0	ENST00000369303.4:c.2284C>T	p.Arg762Cys	p.R762C	ENST00000369303	NM_004440.3	762	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535426	187535426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	26	526	0	ENST00000441802.2:c.9148G>A	p.Ala3050Thr	p.A3050T	ENST00000441802	NM_005245.3	3050	Gca/Aca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117725528	117725528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	105	602	1	ENST00000368508.3:c.353G>A	p.Arg118Gln	p.R118Q	ENST00000368508	NM_002944.2	118	cGa/cAa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741688	17741688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	108	430	0	ENST00000250003.3:c.359G>A	p.Arg120His	p.R120H	ENST00000250003	NM_002478.4	120	cGc/cAc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246091297	246091297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	20	420	0	ENST00000388985.4:c.638C>T	p.Ser213Leu	p.S213L	ENST00000388985		213	tCg/tTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054649	5054649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	46	343	0	ENST00000381652.3:c.701G>A	p.Arg234His	p.R234H	ENST00000381652	NM_004972.3	234	cGc/cAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476364	88476364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	54	677	2	ENST00000360948.2:c.1768G>A	p.Glu590Lys	p.E590K	ENST00000360948	NM_001012338.2	590	Gag/Aag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47700132	47700132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	106	450	0	ENST00000347630.2:c.41C>T	p.Ser14Leu	p.S14L	ENST00000347630	NM_001007230.1	14	tCg/tTg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740204	162740204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	29	569	0	ENST00000367921.3:c.1406C>T	p.Ser469Leu	p.S469L	ENST00000367921	NM_006182.2	469	tCg/tTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70446447	70446447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	107	474	0	ENST00000373644.4:c.5387C>T	p.Ser1796Leu	p.S1796L	ENST00000373644	NM_030625.2	1796	tCg/tTg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803500	32803500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	36	812	0	ENST00000374899.4:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000374899	NM_018833.2	220	cGa/cAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55594061	55594061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	51	531	0	ENST00000288135.5:c.1847C>T	p.Ala616Val	p.A616V	ENST00000288135	NM_000222.2	616	gCg/gTg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59857686	59857686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	33	447	0	ENST00000259008.2:c.1871C>T	p.Ser624Leu	p.S624L	ENST00000259008	NM_032043.2	624	tCg/tTg																																																																														
ALK	238	MSKCC	GRCh37	2	29754974	29754974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	44	532	0	ENST00000389048.3:c.961C>T	p.Leu321Phe	p.L321F	ENST00000389048	NM_004304.4	321	Ctc/Ttc																																																																														
ALK	238	MSKCC	GRCh37	2	29443676	29443676	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56315533		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	25	678	1	ENST00000389048.3:c.3541C>T	p.Arg1181Cys	p.R1181C	ENST00000389048	NM_004304.4	1181	Cgc/Tgc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532474	63532474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	32	761	1	ENST00000307078.5:c.2105G>A	p.Arg702His	p.R702H	ENST00000307078	NM_004655.3	702	cGc/cAc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6442009	6442009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	27	346	0	ENST00000356142.4:c.568G>A	p.Glu190Lys	p.E190K	ENST00000356142	NM_018890.3	190	Gaa/Aaa																																																																														
AKT2	208	MSKCC	GRCh37	19	40741894	40741894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	68	811	1	ENST00000392038.2:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000392038	NM_001626.4	360	Gag/Aag																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751487	57751487	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	25	404	0	ENST00000274289.3:c.1504C>T	p.Gln502Ter	p.Q502*	ENST00000274289	NM_006622.3	502	Cag/Tag																																																																														
MGA	23269	MSKCC	GRCh37	15	42050033	42050033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	25	391	1	ENST00000219905.7:c.7187G>A	p.Arg2396Gln	p.R2396Q	ENST00000219905	NM_001164273.1	2396	cGa/cAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929510	81929510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	25	557	0	ENST00000359376.3:c.1171G>T	p.Asp391Tyr	p.D391Y	ENST00000359376	NM_002661.3	391	Gac/Tac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426543	49426543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	51	998	1	ENST00000301067.7:c.11945G>A	p.Arg3982Gln	p.R3982Q	ENST00000301067	NM_003482.3	3982	cGa/cAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222953	36222953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	33	1005	0	ENST00000222270.7:c.5582C>T	p.Ser1861Leu	p.S1861L	ENST00000222270	NM_014727.1	1861	tCg/tTg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349471	73349471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	25	572	0	ENST00000377767.4:c.865G>A	p.Glu289Lys	p.E289K	ENST00000377767	NM_014953.3	289	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873932	151873932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	155	573	0	ENST00000262189.6:c.8606C>A	p.Ser2869Tyr	p.S2869Y	ENST00000262189	NM_170606.2	2869	tCt/tAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41279559	41279559	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200308943		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	36	480	1	ENST00000349496.5:c.2129G>A	p.Arg710His	p.R710H	ENST00000349496	NM_001904.3	710	cGc/cAc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257957	16257957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	28	556	0	ENST00000375759.3:c.5222C>T	p.Ser1741Leu	p.S1741L	ENST00000375759	NM_015001.2	1741	tCg/tTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81346631	81346631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	16	358	0	ENST00000222390.5:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000222390	NM_000601.4	441	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710875	117710875	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140178288		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	22	523	2	ENST00000368508.3:c.1397G>A	p.Arg466Gln	p.R466Q	ENST00000368508	NM_002944.2	466	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438282	49438282	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192216625		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	49	665	0	ENST00000301067.7:c.4987G>A	p.Glu1663Lys	p.E1663K	ENST00000301067	NM_003482.3	1663	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938325	76938325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	110	771	0	ENST00000373344.5:c.2423G>A	p.Arg808Gln	p.R808Q	ENST00000373344	NM_000489.3	808	cGa/cAa																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599908	28599908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	32	669	0	ENST00000253063.3:c.790C>T	p.Arg264Cys	p.R264C	ENST00000253063	NM_031459.4	264	Cgc/Tgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307169	65307169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	24	518	0	ENST00000342505.4:c.2519C>T	p.Ala840Val	p.A840V	ENST00000342505	NM_002227.2	840	gCc/gTc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400879	72400879	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	28	392	0	ENST00000357731.5:c.292A>G	p.Lys98Glu	p.K98E	ENST00000357731	NM_173808.2	98	Aaa/Gaa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115251226	115251226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	32	690	0	ENST00000369535.4:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000369535	NM_002524.4	167	cGa/cAa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115261329	115261329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	41	421	0	ENST00000438362.2:c.2392C>T	p.Arg798Trp	p.R798W	ENST00000438362	NM_001242891.1	798	Cgg/Tgg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849833	156849833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	28	618	0	ENST00000524377.1:c.2089G>A	p.Glu697Lys	p.E697K	ENST00000524377	NM_002529.3	697	Gag/Aag																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731019	162731019	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	17	383	0	ENST00000367921.3:c.874T>C	p.Phe292Leu	p.F292L	ENST00000367921	NM_006182.2	292	Ttt/Ctt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162743338	162743338	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	25	424	0	ENST00000367921.3:c.1808T>C	p.Val603Ala	p.V603A	ENST00000367921	NM_006182.2	603	gTc/gCc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246091247	246091247	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147009044		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	19	400	0	ENST00000388985.4:c.688G>A	p.Glu230Lys	p.E230K	ENST00000388985		230	Gag/Aag																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724411	112724411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	25	554	0	ENST00000369452.4:c.295G>A	p.Glu99Lys	p.E99K	ENST00000369452	NM_007373.3	99	Gaa/Aaa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573758	64573758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	41	708	0	ENST00000337652.1:c.1010G>A	p.Arg337His	p.R337H	ENST00000337652	NM_130803.2	337	cGc/cAc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94153298	94153298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	24	624	0	ENST00000323929.3:c.2120G>A	p.Arg707Lys	p.R707K	ENST00000323929	NM_005591.3	707	aGa/aAa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94918657	94918657	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	14	350	0	ENST00000536441.1:c.526-1G>A		p.X176_splice	ENST00000536441	NM_144665.3	176																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118342647	118342647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	12	227	0	ENST00000534358.1:c.773G>T	p.Arg258Met	p.R258M	ENST00000534358	NM_005933.3	258	aGg/aTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344036	118344036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	17	458	0	ENST00000534358.1:c.2162G>A	p.Arg721Gln	p.R721Q	ENST00000534358	NM_005933.3	721	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348826	118348826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	39	334	1	ENST00000534358.1:c.3479G>A	p.Gly1160Asp	p.G1160D	ENST00000534358	NM_005933.3	1160	gGc/gAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375267	118375267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	25	433	0	ENST00000534358.1:c.8660A>G	p.Asp2887Gly	p.D2887G	ENST00000534358	NM_005933.3	2887	gAc/gGc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	464344	464344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	49	712	0	ENST00000399788.2:c.850G>A	p.Gly284Ser	p.G284S	ENST00000399788	NM_001042603.1	284	Ggc/Agc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435508	18435508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	36	270	0	ENST00000266497.5:c.493C>A	p.His165Asn	p.H165N	ENST00000266497		165	Cat/Aat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544169	18544169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	21	427	0	ENST00000266497.5:c.1986G>T	p.Gln662His	p.Q662H	ENST00000266497		662	caG/caT																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245985	46245985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	14	341	0	ENST00000334344.6:c.4079G>A	p.Gly1360Glu	p.G1360E	ENST00000334344	NM_152641.2	1360	gGa/gAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428642	49428642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	31	875	0	ENST00000301067.7:c.10308G>T	p.Lys3436Asn	p.K3436N	ENST00000301067	NM_003482.3	3436	aaG/aaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49441791	49441791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	27	528	1	ENST00000301067.7:c.4193C>T	p.Ser1398Leu	p.S1398L	ENST00000301067	NM_003482.3	1398	tCg/tTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488219	56488219	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	41	635	0	ENST00000267101.3:c.1738C>T	p.Arg580Ter	p.R580*	ENST00000267101	NM_001982.3	580	Cga/Tga																																																																														
RAB35	11021	MSKCC	GRCh37	12	120541733	120541733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	67	646	0	ENST00000229340.5:c.124G>A	p.Gly42Arg	p.G42R	ENST00000229340	NM_006861.6	42	Gga/Aga																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431969	121431969	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	18	598	1	ENST00000257555.6:c.716C>T	p.Ala239Val	p.A239V	ENST00000257555		239	gCg/gTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29068923	29068923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	10	221	0	ENST00000282397.4:c.58C>T	p.Leu20Phe	p.L20F	ENST00000282397	NM_002019.4	20	Ctc/Ttc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32900279	32900279	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	27	417	0	ENST00000380152.3:c.467A>C	p.Asp156Ala	p.D156A	ENST00000380152		156	gAt/gCt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912069	32912069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	31	714	0	ENST00000380152.3:c.3577G>T	p.Ala1193Ser	p.A1193S	ENST00000380152		1193	Gct/Tct																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103504600	103504600	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	26	402	0	ENST00000355739.4:c.221T>G	p.Phe74Cys	p.F74C	ENST00000355739	NM_000123.3	74	tTt/tGt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435568	110435568	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	13	327	0	ENST00000375856.3:c.2833T>C	p.Ser945Pro	p.S945P	ENST00000375856	NM_003749.2	945	Tcc/Ccc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060892	38060892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	14	564	0	ENST00000250448.2:c.1097C>T	p.Ala366Val	p.A366V	ENST00000250448	NM_004496.3	366	gCg/gTg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061760	38061760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	39	516	0	ENST00000250448.2:c.229C>A	p.Leu77Met	p.L77M	ENST00000250448	NM_004496.3	77	Ctg/Atg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566271	95566271	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	18	442	0	ENST00000343455.3:c.4052T>C	p.Val1351Ala	p.V1351A	ENST00000343455	NM_177438.2	1351	gTc/gCc																																																																														
MGA	23269	MSKCC	GRCh37	15	41961511	41961511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	29	722	0	ENST00000219905.7:c.419G>A	p.Arg140His	p.R140H	ENST00000219905	NM_001164273.1	140	cGt/cAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43705429	43705429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	31	810	0	ENST00000382044.4:c.5193G>T	p.Lys1731Asn	p.K1731N	ENST00000382044	NM_001141980.1	1731	aaG/aaT																																																																														
CDH1	999	MSKCC	GRCh37	16	68853227	68853227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	42	570	0	ENST00000261769.5:c.1610C>T	p.Pro537Leu	p.P537L	ENST00000261769	NM_004360.3	537	cCg/cTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992970	72992970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	83	1022	0	ENST00000268489.5:c.1075G>A	p.Gly359Ser	p.G359S	ENST00000268489	NM_006885.3	359	Ggc/Agc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350752	89350752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	69	1015	0	ENST00000301030.4:c.2198G>A	p.Arg733Gln	p.R733Q	ENST00000301030	NM_001256183.1	733	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29541484	29541484	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	14	189	0	ENST00000358273.4:c.1408G>T	p.Glu470Ter	p.E470*	ENST00000358273	NM_001042492.2	470	Gaa/Taa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40855800	40855800	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	50	668	0	ENST00000428826.2:c.2056C>T	p.Arg686Ter	p.R686*	ENST00000428826		686	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41276073	41276073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	40	652	0	ENST00000357654.3:c.41T>C	p.Val14Ala	p.V14A	ENST00000357654	NM_007294.3	14	gTc/gCc																																																																														
MSI2	124540	MSKCC	GRCh37	17	55478759	55478759	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	42	511	0	ENST00000284073.2:c.332A>G	p.Lys111Arg	p.K111R	ENST00000284073	NM_138962.2	111	aAa/aGa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858328	59858328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	30	574	0	ENST00000259008.2:c.1667A>G	p.Tyr556Cys	p.Y556C	ENST00000259008	NM_032043.2	556	tAc/tGc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59926518	59926518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	50	822	0	ENST00000259008.2:c.479G>A	p.Arg160Lys	p.R160K	ENST00000259008	NM_032043.2	160	aGa/aAa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226388	2226388	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112052747		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	47	873	2	ENST00000398665.3:c.3868G>A	p.Ala1290Thr	p.A1290T	ENST00000398665	NM_032482.2	1290	Gct/Act																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117578	4117578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	37	649	0	ENST00000262948.5:c.142G>A	p.Glu48Lys	p.E48K	ENST00000262948	NM_030662.3	48	Gag/Aag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247856	10247856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	52	818	0	ENST00000340748.4:c.4346G>A	p.Gly1449Asp	p.G1449D	ENST00000340748		1449	gGc/gAc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19258567	19258567	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	55	874	1	ENST00000162023.5:c.333G>T	p.Glu111Asp	p.E111D	ENST00000162023		111	gaG/gaT																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469074	25469074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	35	867	0	ENST00000264709.3:c.1384G>A	p.Ala462Thr	p.A462T	ENST00000264709	NM_175629.2	462	Gcg/Acg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46597034	46597034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	26	565	0	ENST00000263734.3:c.848C>T	p.Ala283Val	p.A283V	ENST00000263734	NM_001430.4	283	gCg/gTg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46608793	46608793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	19	777	1	ENST00000263734.3:c.2104C>T	p.Leu702Phe	p.L702F	ENST00000263734	NM_001430.4	702	Ctc/Ttc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47657054	47657054	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	22	283	0	ENST00000233146.2:c.1250T>C	p.Val417Ala	p.V417A	ENST00000233146	NM_000251.2	417	gTt/gCt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47707989	47707989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	24	456	0	ENST00000233146.2:c.2613G>T	p.Lys871Asn	p.K871N	ENST00000233146	NM_000251.2	871	aaG/aaT																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026549	48026549	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	34	524	0	ENST00000234420.5:c.1427A>C	p.Lys476Thr	p.K476T	ENST00000234420	NM_000179.2	476	aAg/aCg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033609	48033609	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	27	485	0	ENST00000234420.5:c.3820G>T	p.Glu1274Ter	p.E1274*	ENST00000234420	NM_000179.2	1274	Gaa/Taa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61726900	61726900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	38	573	0	ENST00000401558.2:c.538G>A	p.Asp180Asn	p.D180N	ENST00000401558	NM_003400.3	180	Gat/Aat																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99155400	99155400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	21	442	1	ENST00000074304.5:c.626G>A	p.Arg209Gln	p.R209Q	ENST00000074304	NM_001134224.1	209	cGa/cAa																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204737491	204737491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	19	372	0	ENST00000302823.3:c.628G>A	p.Glu210Lys	p.E210K	ENST00000302823	NM_005214.4	210	Gaa/Aaa																																																																														
BARD1	580	MSKCC	GRCh37	2	215646225	215646225	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	25	385	1	ENST00000260947.4:c.373G>T	p.Glu125Ter	p.E125*	ENST00000260947	NM_000465.2	125	Gaa/Taa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017155	31017155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	15	258	0	ENST00000375687.4:c.486G>T	p.Lys162Asn	p.K162N	ENST00000375687	NM_015338.5	162	aaG/aaT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024945	31024945	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	24	601	0	ENST00000375687.4:c.4430A>C	p.Lys1477Thr	p.K1477T	ENST00000375687	NM_015338.5	1477	aAa/aCa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980829	40980829	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	16	510	0	ENST00000373198.4:c.1657T>G	p.Phe553Val	p.F553V	ENST00000373198	NM_133170.3	553	Ttt/Gtt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46271024	46271024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	50	620	0	ENST00000371998.3:c.3148G>A	p.Glu1050Lys	p.E1050K	ENST00000371998		1050	Gaa/Aaa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62322268	62322268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	26	917	0	ENST00000508582.2:c.2596G>A	p.Glu866Lys	p.E866K	ENST00000508582		866	Gaa/Aaa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121316	29121316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	101	852	1	ENST00000328354.6:c.359G>A	p.Ser120Asn	p.S120N	ENST00000328354	NM_007194.3	120	aGc/aAc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37042455	37042455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	24	439	0	ENST00000231790.2:c.217C>A	p.Leu73Met	p.L73M	ENST00000231790	NM_000249.3	73	Ctg/Atg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125834	47125834	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	26	343	0	ENST00000409792.3:c.5436A>C	p.Lys1812Asn	p.K1812N	ENST00000409792	NM_014159.6	1812	aaA/aaC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162432	47162432	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	82	510	0	ENST00000409792.3:c.3694A>C	p.Lys1232Gln	p.K1232Q	ENST00000409792	NM_014159.6	1232	Aaa/Caa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162522	47162522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	28	457	0	ENST00000409792.3:c.3604C>A	p.Leu1202Met	p.L1202M	ENST00000409792	NM_014159.6	1202	Ctg/Atg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163610	47163610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	19	444	0	ENST00000409792.3:c.2516G>T	p.Arg839Ile	p.R839I	ENST00000409792	NM_014159.6	839	aGa/aTa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165049	47165049	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	85	418	0	ENST00000409792.3:c.1077A>C	p.Lys359Asn	p.K359N	ENST00000409792	NM_014159.6	359	aaA/aaC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165255	47165255	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	139	480	0	ENST00000409792.3:c.871G>T	p.Glu291Ter	p.E291*	ENST00000409792	NM_014159.6	291	Gaa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165906	47165906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	30	584	0	ENST00000409792.3:c.220T>C	p.Ser74Pro	p.S74P	ENST00000409792	NM_014159.6	74	Tca/Cca																																																																														
MST1R	4486	MSKCC	GRCh37	3	49929220	49929220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	38	880	0	ENST00000296474.3:c.3323G>A	p.Arg1108Gln	p.R1108Q	ENST00000296474	NM_002447.2	1108	cGa/cAa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52662933	52662933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	33	520	1	ENST00000394830.3:c.1420C>A	p.Leu474Ile	p.L474I	ENST00000394830	NM_018313.4	474	Cta/Ata																																																																														
MITF	4286	MSKCC	GRCh37	3	69788814	69788814	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	27	266	0	ENST00000352241.4:c.66A>C	p.Lys22Asn	p.K22N	ENST00000352241	NM_198159.2	22	aaA/aaC																																																																														
RYBP	23429	MSKCC	GRCh37	3	72495737	72495737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	32	576	0	ENST00000477973.2:c.333G>A	p.Gly112Glu	p.G112E	ENST00000477973	NM_012234.5	112	gGg/gAg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670468	134670468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	22	585	2	ENST00000398015.3:c.379G>A	p.Ala127Thr	p.A127T	ENST00000398015	NM_004441.4	127	Gcc/Acc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138382759	138382759	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	27	524	0	ENST00000289153.2:c.2785A>C	p.Lys929Gln	p.K929Q	ENST00000289153	NM_006219.2	929	Aaa/Caa																																																																														
ATR	545	MSKCC	GRCh37	3	142242885	142242885	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	45	619	0	ENST00000350721.4:c.4102C>T	p.Arg1368Ter	p.R1368*	ENST00000350721	NM_001184.3	1368	Cga/Tga																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169953092	169953092	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	29	577	0	ENST00000295797.4:c.176C>A	p.Ser59Tyr	p.S59Y	ENST00000295797	NM_002740.5	59	tCt/tAt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430807	181430807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	30	785	0	ENST00000325404.1:c.659C>T	p.Ser220Leu	p.S220L	ENST00000325404	NM_003106.3	220	tCg/tTg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198077	185198077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	75	464	0	ENST00000265026.3:c.2559C>A	p.Phe853Leu	p.F853L	ENST00000265026	NM_004721.4	853	ttC/ttA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129932	55129932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	37	655	0	ENST00000257290.5:c.466G>A	p.Glu156Lys	p.E156K	ENST00000257290	NM_006206.4	156	Gag/Aag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151564	55151564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	45	545	0	ENST00000257290.5:c.2350G>A	p.Asp784Asn	p.D784N	ENST00000257290	NM_006206.4	784	Gat/Aat																																																																														
KDR	3791	MSKCC	GRCh37	4	55956151	55956151	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	102	590	2	ENST00000263923.4:c.3164A>C	p.Lys1055Thr	p.K1055T	ENST00000263923	NM_002253.2	1055	aAa/aCa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189871	66189871	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	23	533	0	ENST00000273854.3:c.3075A>C	p.Glu1025Asp	p.E1025D	ENST00000273854	NM_004439.5	1025	gaA/gaC																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217217	66217217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	19	447	0	ENST00000273854.3:c.2398G>A	p.Asp800Asn	p.D800N	ENST00000273854	NM_004439.5	800	Gat/Aat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251906	153251906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	60	603	0	ENST00000281708.4:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000281708	NM_033632.3	367	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521515	187521515	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	13	397	0	ENST00000441802.2:c.11641-1G>T		p.X3881_splice	ENST00000441802	NM_005245.3	3881																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630452	187630452	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	28	888	0	ENST00000441802.2:c.530A>C	p.Asp177Ala	p.D177A	ENST00000441802	NM_005245.3	177	gAc/gCc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31410988	31410988	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	51	621	0	ENST00000344624.3:c.3532C>T	p.Arg1178Ter	p.R1178*	ENST00000344624		1178	Cga/Tga																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31421411	31421411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	54	571	0	ENST00000344624.3:c.3493C>A	p.His1165Asn	p.H1165N	ENST00000344624		1165	Cat/Aat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31431764	31431764	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	29	403	0	ENST00000344624.3:c.3064A>T	p.Met1022Leu	p.M1022L	ENST00000344624		1022	Atg/Ttg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161263	56161263	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	29	466	0	ENST00000399503.3:c.1132A>C	p.Lys378Gln	p.K378Q	ENST00000399503	NM_005921.1	378	Aaa/Caa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590496	67590496	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	67	233	0	ENST00000274335.5:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000274335		520	Gaa/Taa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80064769	80064769	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	24	429	0	ENST00000265081.6:c.2200C>T	p.Arg734Ter	p.R734*	ENST00000265081	NM_002439.4	734	Cga/Tga																																																																														
STK19	8859	MSKCC	GRCh37	6	31940093	31940093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	49	780	0	ENST00000375331.2:c.235G>A	p.Glu79Lys	p.E79K	ENST00000375331	NM_004197.1	79	Gag/Aag																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805781	32805781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	99	792	0	ENST00000374899.4:c.230T>C	p.Val77Ala	p.V77A	ENST00000374899	NM_018833.2	77	gTc/gCc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748591	43748591	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	16	356	0	ENST00000523873.1:c.545A>C	p.His182Pro	p.H182P	ENST00000523873		182	cAt/cCt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004348	150004348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	73	643	0	ENST00000253339.5:c.1877G>A	p.Arg626Gln	p.R626Q	ENST00000253339		626	cGa/cAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201850	152201850	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	30	422	0	ENST00000206249.3:c.704A>C	p.Lys235Thr	p.K235T	ENST00000206249	NM_000125.3	235	aAg/aCg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6031615	6031615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	14	299	0	ENST00000265849.7:c.977C>A	p.Ser326Tyr	p.S326Y	ENST00000265849	NM_000535.5	326	tCt/tAt																																																																														
HGF	3082	MSKCC	GRCh37	7	81386574	81386574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	44	665	1	ENST00000222390.5:c.413G>A	p.Gly138Glu	p.G138E	ENST00000222390	NM_000601.4	138	gGa/gAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140534476	140534476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	27	447	0	ENST00000288602.6:c.437G>A	p.Arg146Gln	p.R146Q	ENST00000288602	NM_004333.4	146	cGg/cAg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148508748	148508748	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	72	615	0	ENST00000320356.2:c.1916A>C	p.Lys639Thr	p.K639T	ENST00000320356	NM_004456.4	639	aAa/aCa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523717	148523717	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	13	271	0	ENST00000320356.2:c.736G>T	p.Glu246Ter	p.E246*	ENST00000320356	NM_004456.4	246	Gaa/Taa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68939483	68939483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	18	423	1	ENST00000288368.4:c.468G>T	p.Lys156Asn	p.K156N	ENST00000288368	NM_024870.2	156	aaG/aaT																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970919	70970919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	37	733	4	ENST00000276594.2:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000276594	NM_024504.3	448	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465627	8465627	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	29	605	0	ENST00000356435.5:c.3553G>T	p.Glu1185Ter	p.E1185*	ENST00000356435		1185	Gaa/Taa																																																																														
PAX5	5079	MSKCC	GRCh37	9	37002719	37002719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	15	568	0	ENST00000358127.4:c.530C>T	p.Ser177Leu	p.S177L	ENST00000358127	NM_001280556.1	177	tCg/tTg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87339142	87339142	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	22	365	1	ENST00000277120.3:c.724G>T	p.Glu242Ter	p.E242*	ENST00000277120		242	Gaa/Taa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87549140	87549140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	68	569	0	ENST00000277120.3:c.1697G>A	p.Gly566Glu	p.G566E	ENST00000277120		566	gGa/gAa																																																																														
FANCC	2176	MSKCC	GRCh37	9	98011502	98011502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	28	589	0	ENST00000289081.3:c.72G>T	p.Gln24His	p.Q24H	ENST00000289081	NM_000136.2	24	caG/caT																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128322038	128322038	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	27	554	0	ENST00000265960.3:c.722T>C	p.Val241Ala	p.V241A	ENST00000265960	NM_001006617.1	241	gTg/gCg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139794123	139794123	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs200834553		P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	79	557	0	ENST00000247668.2:c.266C>T	p.Ser89Leu	p.S89L	ENST00000247668	NM_021138.3	89	tCg/tTg																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841131	15841131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	22	471	0	ENST00000307771.7:c.1215G>T	p.Lys405Asn	p.K405N	ENST00000307771	NM_005089.3	405	aaG/aaT																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222782	53222782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	32	968	3	ENST00000375401.3:c.4154C>T	p.Thr1385Ile	p.T1385I	ENST00000375401	NM_004187.3	1385	aCt/aTt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410985	63410985	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	19	811	0	ENST00000330258.3:c.2182T>C	p.Phe728Leu	p.F728L	ENST00000330258	NM_152424.3	728	Ttt/Ctt																																																																														
ATRX	546	MSKCC	GRCh37	X	76907615	76907615	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	61	611	0	ENST00000373344.5:c.4546A>C	p.Lys1516Gln	p.K1516Q	ENST00000373344	NM_000489.3	1516	Aaa/Caa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938444	76938444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	32	795	0	ENST00000373344.5:c.2304G>T	p.Lys768Asn	p.K768N	ENST00000373344	NM_000489.3	768	aaG/aaT																																																																														
BTK	695	MSKCC	GRCh37	X	100617194	100617194	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	59	705	0	ENST00000308731.7:c.555A>C	p.Lys185Asn	p.K185N	ENST00000308731	NM_000061.2	185	aaA/aaC																																																																														
STAG2	10735	MSKCC	GRCh37	X	123210280	123210280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	126	562	1	ENST00000218089.9:c.2632G>A	p.Glu878Lys	p.E878K	ENST00000218089	NM_001042749.1	878	Gag/Aag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438333	110438333	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	12	175	0	ENST00000375856.3:c.68A>G	p.Asn23Ser	p.N23S	ENST00000375856	NM_003749.2	23	aAc/aGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	247	786	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	197	465	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	142	504	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0032821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	107	298	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0032821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	81	357	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615812	1615812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	109	501	1	ENST00000344749.5:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000344749	NM_001136139.2	487	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912185	114912185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	300	530	1	ENST00000543371.1:c.1255G>A	p.Ala419Thr	p.A419T	ENST00000543371	NM_001198531.1	419	Gcg/Acg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741519	17741519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	233	519	0	ENST00000250003.3:c.190C>G	p.His64Asp	p.H64D	ENST00000250003	NM_002478.4	64	Cac/Gac																																																																														
ATM	472	MSKCC	GRCh37	11	108163345	108163345	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0032821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	137	397	0	ENST00000278616.4:c.4437-1G>C		p.X1479_splice	ENST00000278616	NM_000051.3	1479																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67358516	67358517	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	77	272	0	ENST00000327367.4:c.29dupC	p.Ile11AspfsTer100	p.I11Dfs*100	ENST00000327367	NM_005902.3	8	-/C																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983945	15983945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	129	432	0	ENST00000268712.3:c.3274C>T	p.Arg1092Trp	p.R1092W	ENST00000268712	NM_006311.3	1092	Cgg/Tgg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119066	70119066	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	220	371	0	ENST00000245479.2:c.638A>T	p.His213Leu	p.H213L	ENST00000245479	NM_000346.3	213	cAc/cTc																																																																														
AKT2	208	MSKCC	GRCh37	19	40747909	40747909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	203	686	0	ENST00000392038.2:c.509G>A	p.Arg170Gln	p.R170Q	ENST00000392038	NM_001626.4	170	cGg/cAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16235922	16235922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	100	502	0	ENST00000375759.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000375759	NM_015001.2	330	Gag/Aag																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	408	493	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643371	38643371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	83	508	0	ENST00000299084.4:c.841C>G	p.Gln281Glu	p.Q281E	ENST00000299084	NM_152594.2	281	Cag/Gag																																																																														
MGA	23269	MSKCC	GRCh37	15	42041686	42041686	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	163	455	2	ENST00000219905.7:c.5881C>T	p.Gln1961Ter	p.Q1961*	ENST00000219905	NM_001164273.1	1961	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	282	627	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	219	474	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																														
NF2	4771	MSKCC	GRCh37	22	30057292	30057292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	145	397	0	ENST00000338641.4:c.774G>C	p.Trp258Cys	p.W258C	ENST00000338641	NM_000268.3	258	tgG/tgC																																																																														
EP300	2033	MSKCC	GRCh37	22	41564849	41564849	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	221	634	0	ENST00000263253.7:c.4150G>C	p.Asp1384His	p.D1384H	ENST00000263253	NM_001429.3	1384	Gac/Cac																																																																														
MLH1	4292	MSKCC	GRCh37	3	37035095	37035095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	188	414	0	ENST00000231790.2:c.57C>G	p.Ile19Met	p.I19M	ENST00000231790	NM_000249.3	19	atC/atG																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098382	47098382	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	234	634	0	ENST00000409792.3:c.6892C>T	p.Gln2298Ter	p.Q2298*	ENST00000409792	NM_014159.6	2298	Caa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164118	47164118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	116	362	0	ENST00000409792.3:c.2008G>T	p.Glu670Ter	p.E670*	ENST00000409792	NM_014159.6	670	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112178410	112178410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	111	311	1	ENST00000257430.4:c.7119G>A	p.Met2373Ile	p.M2373I	ENST00000257430	NM_000038.5	2373	atG/atA																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911487	131911487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	146	382	0	ENST00000265335.6:c.232G>T	p.Val78Leu	p.V78L	ENST00000265335		78	Gtg/Ttg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	134	346	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859845	151859845	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	143	395	0	ENST00000262189.6:c.10817G>C	p.Arg3606Thr	p.R3606T	ENST00000262189	NM_170606.2	3606	aGa/aCa																																																																														
ATRX	546	MSKCC	GRCh37	X	76812923	76812964	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TTTGGCAGCATGGGAGTATCCCTCTTCTTCTTCTTTTCTGAA	TTTGGCAGCATGGGAGTATCCCTCTTCTTCTTCTTTTCTGAA	-			P-0032828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	58	611	0	ENST00000373344.5:c.6657_6698del	p.Asn2219_Pro2232del	p.N2219_P2232del	ENST00000373344	NM_000489.3	2219	aaTTCAGAAAAGAAGAAGAAGAGGGATACTCCCATGCTGCCAAAg/aag																																																																														
ATM	472	MSKCC	GRCh37	11	108198455	108198455	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	19	409	0	ENST00000278616.4:c.7059del	p.Ala2354ArgfsTer8	p.A2354Rfs*8	ENST00000278616	NM_000051.3	2353	ccT/cc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923438	9923438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	35	619	0	ENST00000330684.3:c.1849G>A	p.Val617Met	p.V617M	ENST00000330684	NM_001134407.1	617	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	167	439	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141036	55141036	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	177	353	0	ENST00000257290.5:c.1682T>A	p.Val561Asp	p.V561D	ENST00000257290	NM_006206.4	561	gTc/gAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352540	118352540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	159	428	0	ENST00000534358.1:c.3745A>G	p.Arg1249Gly	p.R1249G	ENST00000534358	NM_005933.3	1249	Aga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	115	553	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	66	497	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0032851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	96	492	2	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	69	413	1	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120639	115120639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	120	677	0	ENST00000257566.3:c.367A>G	p.Met123Val	p.M123V	ENST00000257566	NM_016569.3	123	Atg/Gtg																																																																														
APC	324	MSKCC	GRCh37	5	112173672	112173690	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTCTATGGTGATTATGT	GTCTCTATGGTGATTATGT	-			P-0032851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	42	363	0	ENST00000257430.4:c.2381_2399del	p.Ser794IlefsTer20	p.S794Ifs*20	ENST00000257430	NM_000038.5	794	aGTCTCTATGGTGATTATGTt/at																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662481	227662481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	62	484	0	ENST00000305123.5:c.974G>A	p.Arg325His	p.R325H	ENST00000305123	NM_005544.2	325	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	67	382	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175419	112175420	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	44	345	0	ENST00000257430.4:c.4129_4130del	p.Val1377SerfsTer8	p.V1377Sfs*8	ENST00000257430	NM_000038.5	1376	taTGtt/tatt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	176	630	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609957	81609957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	27	379	0	ENST00000298171.2:c.1555C>T	p.Arg519Cys	p.R519C	ENST00000298171	NM_000369.2	519	Cgc/Tgc																																																																														
IL10	3586	MSKCC	GRCh37	1	206945777	206945777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	38	553	0	ENST00000423557.1:c.4C>G	p.His2Asp	p.H2D	ENST00000423557	NM_000572.2	2	Cac/Gac																																																																														
RET	5979	MSKCC	GRCh37	10	43615533	43615533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	57	512	0	ENST00000355710.3:c.2612T>C	p.Val871Ala	p.V871A	ENST00000355710	NM_020975.4	871	gTt/gCt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440097	49440097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	54	691	1	ENST00000301067.7:c.4529G>A	p.Cys1510Tyr	p.C1510Y	ENST00000301067	NM_003482.3	1510	tGt/tAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911298	32911301	+	frameshift_variant	Frame_Shift_Del	DEL	AAAC	AAAC	-			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	90	528	0	ENST00000380152.3:c.2808_2811delACAA	p.Ala938ProfsTer21	p.A938Pfs*21	ENST00000380152		936	AAACaa/aa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251886	153251891	+	stop_gained,inframe_deletion,splice_region_variant	Nonsense_Mutation	DEL	TAGGAG	TAGGAG	-			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	122	518	0	ENST00000281708.4:c.1115_1120del	p.Ser372_Lys374delinsTer	p.S372_K374delins*	ENST00000281708	NM_033632.3	372	tCTCCTAag/tag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562922	176562922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	83	504	0	ENST00000439151.2:c.818C>T	p.Ser273Leu	p.S273L	ENST00000439151	NM_022455.4	273	tCa/tTa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372544	55372544	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	209	780	0	ENST00000297316.4:c.1234C>G	p.Pro412Ala	p.P412A	ENST00000297316	NM_022454.3	412	Cct/Gct																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517908	8517918	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCCAGGACT	AAGCCAGGACT	-			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	76	396	0	ENST00000356435.5:c.1473_1483del	p.Lys491AsnfsTer12	p.K491Nfs*12	ENST00000356435		491	aaAGTCCTGGCTTtt/aatt																																																																														
ATRX	546	MSKCC	GRCh37	X	76889133	76889133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	43	436	1	ENST00000373344.5:c.4877G>A	p.Cys1626Tyr	p.C1626Y	ENST00000373344	NM_000489.3	1626	tGt/tAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	249	401	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	175	553	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	102	291	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	111	341	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604773	48604773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	56	327	0	ENST00000342988.3:c.1595C>A	p.Ala532Asp	p.A532D	ENST00000342988	NM_005359.5	532	gCc/gAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243975	5243975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	234	525	2	ENST00000357368.4:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000357368	NM_002850.3	503	Gcc/Acc																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839930	27839930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	85	638	0	ENST00000328488.2:c.164A>G	p.Tyr55Cys	p.Y55C	ENST00000328488	NM_003533.2	55	tAc/tGc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188866	32188866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	88	568	0	ENST00000375023.3:c.688C>T	p.Arg230Cys	p.R230C	ENST00000375023	NM_004557.3	230	Cgt/Tgt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	62	371	2	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	119	515	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337698	73337702	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAT	GAAAT	-			P-0032872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	21	225	0	ENST00000377767.4:c.2014_2018del	p.Ile672CysfsTer7	p.I672Cfs*7	ENST00000377767	NM_014953.3	672	ATTTCt/t																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22142560	22142560	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	47	442	0	ENST00000215832.6:c.842A>G	p.Asn281Ser	p.N281S	ENST00000215832	NM_002745.4	281	aAt/aGt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	219	331	0	ENST00000346208.3:c.878T>G	p.Met293Arg	p.M293R	ENST00000346208		293	aTg/aGg																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518634	204518634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	52	224	0	ENST00000367182.3:c.1297C>A	p.Leu433Ile	p.L433I	ENST00000367182	NM_001278516.1	433	Ctc/Atc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060817	38060818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	290	479	0	ENST00000250448.2:c.1171dup	p.Asp391GlyfsTer24	p.D391Gfs*24	ENST00000250448	NM_004496.3	391	gac/gGac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214573	5214573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	230	385	0	ENST00000357368.4:c.4493G>A	p.Arg1498Gln	p.R1498Q	ENST00000357368	NM_002850.3	1498	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	373	397	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247280	153247280	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	190	262	0	ENST00000281708.4:c.1522C>T	p.Gln508Ter	p.Q508*	ENST00000281708	NM_033632.3	508	Caa/Taa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257459	16257459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	106	342	0	ENST00000375759.3:c.4724C>A	p.Ser1575Tyr	p.S1575Y	ENST00000375759	NM_015001.2	1575	tCc/tAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111490	8111490	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	298	383	0	ENST00000346208.3:c.976A>G	p.Thr326Ala	p.T326A	ENST00000346208		326	Aca/Gca																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679838	88679838	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	162	275	0	ENST00000360948.2:c.625C>A	p.Leu209Ile	p.L209I	ENST00000360948	NM_001012338.2	209	Ctt/Att																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857044	9857044	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201707833		P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	65	239	0	ENST00000330684.3:c.4357G>T	p.Val1453Leu	p.V1453L	ENST00000330684	NM_001134407.1	1453	Gtg/Ttg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760778	59760778	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs112214651		P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	111	505	0	ENST00000259008.2:c.3629A>G	p.Asp1210Gly	p.D1210G	ENST00000259008	NM_032043.2	1210	gAt/gGt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211188	2211188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	402	490	0	ENST00000398665.3:c.1442C>A	p.Pro481Gln	p.P481Q	ENST00000398665	NM_032482.2	481	cCg/cAg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948775	17948775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	458	552	0	ENST00000458235.1:c.1667A>G	p.Lys556Arg	p.K556R	ENST00000458235	NM_000215.3	556	aAg/aGg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42860357	42860357	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	359	394	0	ENST00000398585.3:c.520T>A	p.Ser174Thr	p.S174T	ENST00000398585	NM_001135099.1	174	Tca/Aca																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462353	89462353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	66	402	0	ENST00000336596.2:c.1825G>C	p.Val609Leu	p.V609L	ENST00000336596	NM_005233.5	609	Gtt/Ctt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100000	157100008	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGA	GGCGGCGGA	-			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	39	49	1	ENST00000346085.5:c.939_947del	p.Gly317_Gly319del	p.G317_G319del	ENST00000346085	NM_020732.3	313	GGCGGCGGA/-																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431629	6431631	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	48	243	0	ENST00000356142.4:c.186_188del	p.Glu62del	p.E62del	ENST00000356142	NM_018890.3	61	cAAGaa/caa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376087	8376087	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	153	207	0	ENST00000356435.5:c.4510G>C	p.Gly1504Arg	p.G1504R	ENST00000356435		1504	Ggt/Cgt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	299	402	0	ENST00000250448.2:c.740A>T	p.His247Leu	p.H247L	ENST00000250448	NM_004496.3	247	cAc/cTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344348	118344348	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	189	288	0	ENST00000534358.1:c.2474A>T	p.Glu825Val	p.E825V	ENST00000534358	NM_005933.3	825	gAg/gTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643348	52643348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	66	347	0	ENST00000394830.3:c.2548C>T	p.Arg850Ter	p.R850*	ENST00000394830	NM_018313.4	850	Cga/Tga																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784077	120784077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	235	547	3	ENST00000257552.2:c.908G>A	p.Arg303His	p.R303H	ENST00000257552	NM_002442.3	303	cGc/cAc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30105659	30105659	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	76	488	0	ENST00000331968.5:c.1027G>C	p.Glu343Gln	p.E343Q	ENST00000331968	NM_002742.2	343	Gaa/Caa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183848	10183850	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0032897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	74	407	0	ENST00000256474.2:c.322_324del	p.Arg108del	p.R108del	ENST00000256474	NM_000551.3	106	gGCCgc/ggc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47155483	47155483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	46	269	0	ENST00000409792.3:c.4598G>T	p.Cys1533Phe	p.C1533F	ENST00000409792	NM_014159.6	1533	tGt/tTt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589581	67589585	+	protein_altering_variant	In_Frame_Del	DEL	ATTAC	ATTAC	TT			P-0032897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	21	209	1	ENST00000274335.5:c.1344_1348delinsTT	p.Lys448_His450delinsAsnTyr	p.K448_H450delinsNY	ENST00000274335		448	aaATTACat/aaTTat																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287235	33287235	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	72	442	0	ENST00000374542.5:c.1862A>C	p.Asn621Thr	p.N621T	ENST00000374542	NM_001141970.1	621	aAc/aCc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223423	53223424	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGAGCTCAGCCAGCCGTCC			P-0032897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	74	260	0	ENST00000375401.3:c.3916_3935dup	p.Gln1313AspfsTer52	p.Q1313Dfs*52	ENST00000375401	NM_004187.3	1312	cgc/cgGGACGGCTGGCTGAGCTCCGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	80	175	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	285	588	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
RB1	5925	MSKCC	GRCh37	13	49037966	49037966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	72	428	0	ENST00000267163.4:c.2206C>T	p.Gln736Ter	p.Q736*	ENST00000267163	NM_000321.2	736	Cag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045016	47045016	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	161	335	0	ENST00000329236.7:c.2108C>G	p.Ser703Ter	p.S703*	ENST00000329236	NM_001204466.1	703	tCa/tGa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481811	56481811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	110	613	0	ENST00000267101.3:c.739C>T	p.Arg247Trp	p.R247W	ENST00000267101	NM_001982.3	247	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432535	49432554	+	frameshift_variant	Frame_Shift_Del	DEL	CACTGGCTCACCAGGGCCTG	CACTGGCTCACCAGGGCCTG	T			P-0032933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	147	582	0	ENST00000301067.7:c.8585_8604delinsA	p.Pro2862HisfsTer42	p.P2862Hfs*42	ENST00000301067	NM_003482.3	2862	cCAGGCCCTGGTGAGCCAGTG/cA																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562850	21562850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	471	405	0	ENST00000382592.4:c.1069G>A	p.Val357Met	p.V357M	ENST00000382592	NM_014572.2	357	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	205	514	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ATM	472	MSKCC	GRCh37	11	108121561	108121561	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	96	515	0	ENST00000278616.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000278616	NM_000051.3	457	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108121466	108121467	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	128	392	0	ENST00000278616.4:c.1276dup	p.Ser426LysfsTer4	p.S426Kfs*4	ENST00000278616	NM_000051.3	425	gca/gcAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447099	49447099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	127	470	0	ENST00000301067.7:c.845C>T	p.Pro282Leu	p.P282L	ENST00000301067	NM_003482.3	282	cCt/cTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098369	47098369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	124	563	0	ENST00000409792.3:c.6905G>T	p.Cys2302Phe	p.C2302F	ENST00000409792	NM_014159.6	2302	tGt/tTt																																																																														
APC	324	MSKCC	GRCh37	5	112175319	112175320	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	157	268	0	ENST00000257430.4:c.4030dup	p.Ser1344PhefsTer10	p.S1344Ffs*10	ENST00000257430	NM_000038.5	1343	tct/tcTt																																																																														
TEK	7010	MSKCC	GRCh37	9	27205020	27205020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	46	559	0	ENST00000380036.4:c.2321G>A	p.Arg774Lys	p.R774K	ENST00000380036	NM_000459.3	774	aGg/aAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105635	11105636	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0032935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	64	579	0	ENST00000344626.4:c.1554_1555del	p.Asn519ArgfsTer14	p.N519Rfs*14	ENST00000344626	NM_003072.3	517	aaAGag/aaag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618950	37618950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	62	547	0	ENST00000447079.4:c.626G>C	p.Ser209Thr	p.S209T	ENST00000447079	NM_015083.1	209	aGt/aCt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268438	46268438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	47	386	1	ENST00000371998.3:c.2825G>T	p.Gly942Val	p.G942V	ENST00000371998		942	gGa/gTa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257104	198257104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	327	570	1	ENST00000335508.6:c.3838C>G	p.Leu1280Val	p.L1280V	ENST00000335508	NM_012433.2	1280	Ctc/Gtc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520027	106520027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370034420		P-0032961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	95	252	1	ENST00000359195.3:c.2455G>A	p.Asp819Asn	p.D819N	ENST00000359195	NM_002649.2	819	Gat/Aat																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120247	70120247	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	614	611	0	ENST00000245479.2:c.1249C>T	p.Gln417Ter	p.Q417*	ENST00000245479	NM_000346.3	417	Cag/Tag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431969	121431969	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	177	490	0	ENST00000257555.6:c.716C>T	p.Ala239Val	p.A239V	ENST00000257555		239	gCg/gTg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932705	49932705	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	262	607	0	ENST00000296474.3:c.3166T>G	p.Ser1056Ala	p.S1056A	ENST00000296474	NM_002447.2	1056	Tcc/Gcc																																																																														
APC	324	MSKCC	GRCh37	5	112174183	112174183	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	95	313	0	ENST00000257430.4:c.2894del	p.Asn965IlefsTer15	p.N965Ifs*15	ENST00000257430	NM_000038.5	964	ttA/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	388	348	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872497	136872497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	193	170	1	ENST00000241393.3:c.1001G>A	p.Arg334Gln	p.R334Q	ENST00000241393	NM_003467.2	334	cGa/cAa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643614	52643614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	410	257	0	ENST00000394830.3:c.2282G>A	p.Arg761Lys	p.R761K	ENST00000394830	NM_018313.4	761	aGa/aAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55955875	55955875	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	216	155	0	ENST00000263923.4:c.3287G>A	p.Trp1096Ter	p.W1096*	ENST00000263923	NM_002253.2	1096	tGg/tAg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123202443	123202443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	159	178	0	ENST00000218089.9:c.2295G>C	p.Met765Ile	p.M765I	ENST00000218089	NM_001042749.1	765	atG/atC																																																																														
TP53	7157	MSKCC	GRCh37	17	7579315	7579316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	329	559	0	ENST00000269305.4:c.371dupG	p.Cys124TrpfsTer25	p.C124Wfs*25	ENST00000269305	NM_001126112.2	124	tgc/tgGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0032985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	42	394	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
TET1	80312	MSKCC	GRCh37	10	70404720	70404720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	49	476	0	ENST00000373644.4:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000373644	NM_030625.2	745	cGa/cAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180041110	180041110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	155	806	1	ENST00000261937.6:c.3289G>A	p.Val1097Met	p.V1097M	ENST00000261937	NM_182925.4	1097	Gtg/Atg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31410987	31410987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	122	577	0	ENST00000344624.3:c.3533G>A	p.Arg1178Gln	p.R1178Q	ENST00000344624		1178	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916932	178916932	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	45	470	0	ENST00000263967.3:c.319A>C	p.Asn107His	p.N107H	ENST00000263967	NM_006218.2	107	Aac/Cac																																																																														
KIT	3815	MSKCC	GRCh37	4	55598128	55598128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	407	545	0	ENST00000288135.5:c.2325G>C	p.Gln775His	p.Q775H	ENST00000288135	NM_000222.2	775	caG/caC																																																																														
ABL1	25	MSKCC	GRCh37	9	133738211	133738211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	46	470	0	ENST00000318560.5:c.611C>T	p.Thr204Met	p.T204M	ENST00000318560	NM_005157.4	204	aCg/aTg																																																																														
HRAS	3265	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	187	508	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45860619	45860619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	319	731	0	ENST00000391945.4:c.1388C>A	p.Pro463Gln	p.P463Q	ENST00000391945	NM_000400.3	463	cCg/cAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189526071	189526071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	66	388	1	ENST00000264731.3:c.335C>T	p.Thr112Met	p.T112M	ENST00000264731	NM_003722.4	112	aCg/aTg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696642	47696642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	14	500	0	ENST00000347630.2:c.306C>A	p.Phe102Leu	p.F102L	ENST00000347630	NM_001007230.1	102	ttC/ttA																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023246	33023247	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0032989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	68	652	0	ENST00000300177.4:c.356dupA	p.Tyr119Ter	p.Y119*	ENST00000300177	NM_001191322.1	119	tac/tAac																																																																														
KDR	3791	MSKCC	GRCh37	4	55955626	55955626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	11	427	0	ENST00000263923.4:c.3319C>T	p.Pro1107Ser	p.P1107S	ENST00000263923	NM_002253.2	1107	Cct/Tct																																																																														
SDHA	6389	MSKCC	GRCh37	5	251195	251195	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	32	314	0	ENST00000264932.6:c.1640A>T	p.Lys547Met	p.K547M	ENST00000264932	NM_004168.2	547	aAg/aTg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878900	117878900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	18	405	0	ENST00000297338.2:c.69G>T	p.Trp23Cys	p.W23C	ENST00000297338	NM_006265.2	23	tgG/tgT																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15826392	15826392	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	48	230	0	ENST00000307771.7:c.436G>A	p.Glu146Lys	p.E146K	ENST00000307771	NM_005089.3	146	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	22	462	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	62	683	1	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	15	396	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	23	570	2	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158153	47158153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	12	528	0	ENST00000409792.3:c.4546T>C	p.Cys1516Arg	p.C1516R	ENST00000409792	NM_014159.6	1516	Tgt/Cgt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845621	63845621	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	11	194	0	ENST00000279873.7:c.1360G>T	p.Glu454Ter	p.E454*	ENST00000279873	NM_032199.2	454	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692920	89692921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	48	492	0	ENST00000371953.3:c.405dupA	p.Cys136MetfsTer44	p.C136Mfs*44	ENST00000371953	NM_000314.4	135	ata/atAa																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885578	111885578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	39	673	0	ENST00000341259.2:c.1355C>G	p.Ala452Gly	p.A452G	ENST00000341259	NM_005475.2	452	gCc/gGc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	29	587	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466022	69466022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	67	620	0	ENST00000227507.2:c.860C>A	p.Pro287His	p.P287H	ENST00000227507	NM_053056.2	287	cCc/cAc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56180586	56180588	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	10	383	0	ENST00000399503.3:c.3918_3920delCAT	p.Ile1307del	p.I1307del	ENST00000399503	NM_005921.1	1305	aaCATc/aac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864291	57864291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	34	556	1	ENST00000228682.2:c.1768C>T	p.Arg590Trp	p.R590W	ENST00000228682	NM_005269.2	590	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107014	27107014	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	43	432	0	ENST00000324856.7:c.6625C>T	p.Gln2209Ter	p.Q2209*	ENST00000324856	NM_006015.4	2209	Cag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229229	36229229	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	66	699	0	ENST00000222270.7:c.7919A>G	p.Asp2640Gly	p.D2640G	ENST00000222270	NM_014727.1	2640	gAc/gGc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46603752	46603752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	23	598	0	ENST00000263734.3:c.1109T>C	p.Met370Thr	p.M370T	ENST00000263734	NM_001430.4	370	aTg/aCg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158636870	158636870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	33	514	0	ENST00000263640.3:c.310A>G	p.Thr104Ala	p.T104A	ENST00000263640	NM_001105.4	104	Acg/Gcg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422522	225422522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	11	492	0	ENST00000264414.4:c.118G>A	p.Ala40Thr	p.A40T	ENST00000264414	NM_003590.4	40	Gca/Aca																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160701	56160702	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	40	399	0	ENST00000399503.3:c.977_978del	p.Ser326PhefsTer11	p.S326Ffs*11	ENST00000399503	NM_005921.1	325	aaCTct/aact																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449848	149449848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	46	636	1	ENST00000286301.3:c.1216G>A	p.Val406Ile	p.V406I	ENST00000286301	NM_005211.3	406	Gtc/Atc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117861195	117861195	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	14	435	0	ENST00000297338.2:c.1694A>G	p.His565Arg	p.H565R	ENST00000297338	NM_006265.2	565	cAt/cGt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402519	139402519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	31	676	1	ENST00000277541.6:c.3398G>A	p.Cys1133Tyr	p.C1133Y	ENST00000277541	NM_017617.3	1133	tGc/tAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70357049	70357049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	25	698	0	ENST00000374080.3:c.5564T>C	p.Val1855Ala	p.V1855A	ENST00000374080		1855	gTg/gCg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193121546	193121546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	38	262	0	ENST00000367435.3:c.944A>G	p.Tyr315Cys	p.Y315C	ENST00000367435	NM_024529.4	315	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	394	607	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11308151	11308151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	234	359	0	ENST00000361445.4:c.841C>T	p.Arg281Cys	p.R281C	ENST00000361445	NM_004958.3	281	Cgt/Tgt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390713	118390713	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	233	412	0	ENST00000534358.1:c.11363A>T	p.His3788Leu	p.H3788L	ENST00000534358	NM_005933.3	3788	cAt/cTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631265	117631265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	140	410	0	ENST00000368508.3:c.6413T>C	p.Phe2138Ser	p.F2138S	ENST00000368508	NM_002944.2	2138	tTc/tCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	26	420	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0033011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	52	491	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271447	38271447	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	55	586	0	ENST00000425967.3:c.2374A>G	p.Thr792Ala	p.T792A	ENST00000425967	NM_001174067.1	792	Acc/Gcc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041423	47041423	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	68	307	1	ENST00000329236.7:c.1533C>A	p.Tyr511Ter	p.Y511*	ENST00000329236	NM_001204466.1	511	taC/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0033022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	47	487	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
MGA	23269	MSKCC	GRCh37	15	41961999	41961999	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	56	534	0	ENST00000219905.7:c.907C>T	p.Gln303Ter	p.Q303*	ENST00000219905	NM_001164273.1	303	Caa/Taa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593397	48593397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	50	377	0	ENST00000342988.3:c.1148T>C	p.Ile383Thr	p.I383T	ENST00000342988	NM_005359.5	383	aTa/aCa																																																																														
CIC	23152	MSKCC	GRCh37	19	42799159	42799159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	102	496	0	ENST00000575354.2:c.4643C>T	p.Ala1548Val	p.A1548V	ENST00000575354	NM_015125.3	1548	gCc/gTc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440897	52440897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	80	516	0	ENST00000460680.1:c.607A>G	p.Thr203Ala	p.T203A	ENST00000460680	NM_004656.3	203	Aca/Gca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	75	460	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	190	311	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa																																																																														
TET2	54790	MSKCC	GRCh37	4	106164916	106164916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	44	343	0	ENST00000380013.4:c.3784C>T	p.Arg1262Trp	p.R1262W	ENST00000380013	NM_001127208.2	1262	Cgg/Tgg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010455	48010455	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	55	315	0	ENST00000234420.5:c.83C>A	p.Ser28Ter	p.S28*	ENST00000234420	NM_000179.2	28	tCa/tAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004574	16004574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	47	394	1	ENST00000268712.3:c.2680G>A	p.Glu894Lys	p.E894K	ENST00000268712	NM_006311.3	894	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877084	151877084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	45	467	0	ENST00000262189.6:c.7277A>G	p.Glu2426Gly	p.E2426G	ENST00000262189	NM_170606.2	2426	gAg/gGg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257690	16257690	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	105	433	0	ENST00000375759.3:c.4955C>G	p.Ser1652Ter	p.S1652*	ENST00000375759	NM_015001.2	1652	tCa/tGa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36941233	36941233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	133	596	0	ENST00000361632.4:c.106G>T	p.Val36Phe	p.V36F	ENST00000361632		36	Gtc/Ttc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498772	246498772	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	64	463	0	ENST00000388985.4:c.233A>T	p.Lys78Ile	p.K78I	ENST00000388985		78	aAa/aTa																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200084	67200084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	61	497	0	ENST00000312629.5:c.471C>A	p.Phe157Leu	p.F157L	ENST00000312629	NM_003952.2	157	ttC/ttA																																																																														
FGF3	2248	MSKCC	GRCh37	11	69631131	69631131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	113	602	0	ENST00000334134.2:c.281G>T	p.Gly94Val	p.G94V	ENST00000334134	NM_005247.2	94	gGg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579461	7579462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	112	621	1	ENST00000269305.4:c.225dup	p.Ala76CysfsTer73	p.A76Cfs*73	ENST00000269305	NM_001126112.2	75	-/T																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626850	14626850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	85	691	0	ENST00000254322.2:c.925G>C	p.Glu309Gln	p.E309Q	ENST00000254322	NM_006145.1	309	Gag/Cag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15297919	15297919	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	444	606	1	ENST00000263388.2:c.1837A>T	p.Thr613Ser	p.T613S	ENST00000263388	NM_000435.2	613	Aca/Tca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299079	15299079	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	76	545	0	ENST00000263388.2:c.1459C>G	p.Arg487Gly	p.R487G	ENST00000263388	NM_000435.2	487	Cga/Gga																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952229	17952229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	62	623	0	ENST00000458235.1:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000458235	NM_000215.3	371	Gaa/Aaa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25466819	25466819	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	61	536	0	ENST00000264709.3:c.1884del	p.Glu629ArgfsTer22	p.E629Rfs*22	ENST00000264709	NM_175629.2	628	gcT/gc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056417	180056417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	41	437	0	ENST00000261937.6:c.827G>T	p.Gly276Val	p.G276V	ENST00000261937	NM_182925.4	276	gGt/gTt																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045874	26045874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	120	425	0	ENST00000540144.1:c.236T>A	p.Phe79Tyr	p.F79Y	ENST00000540144	NM_003531.2	79	tTc/tAc																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271255	26271255	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	112	478	0	ENST00000305910.3:c.358A>G	p.Ile120Val	p.I120V	ENST00000305910	NM_003534.2	120	Atc/Gtc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188304	32188304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	132	688	1	ENST00000375023.3:c.1037G>T	p.Gly346Val	p.G346V	ENST00000375023	NM_004557.3	346	gGc/gTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555194	106555194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	48	449	0	ENST00000369096.4:c.2311G>T	p.Gly771Cys	p.G771C	ENST00000369096	NM_001198.3	771	Ggc/Tgc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962373	2962373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	155	648	0	ENST00000396946.4:c.2164G>A	p.Glu722Lys	p.E722K	ENST00000396946	NM_032415.4	722	Gag/Aag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455101	50455101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	117	282	0	ENST00000331340.3:c.648A>T	p.Leu216Phe	p.L216F	ENST00000331340	NM_006060.4	216	ttA/ttT																																																																														
HGF	3082	MSKCC	GRCh37	7	81332052	81332052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	35	260	1	ENST00000222390.5:c.2032G>T	p.Val678Phe	p.V678F	ENST00000222390	NM_000601.4	678	Gtt/Ttt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859492	151859492	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	64	501	0	ENST00000262189.6:c.11170G>C	p.Glu3724Gln	p.E3724Q	ENST00000262189	NM_170606.2	3724	Gag/Cag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945357	151945357	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	42	217	0	ENST00000262189.6:c.2162A>T	p.Gln721Leu	p.Q721L	ENST00000262189	NM_170606.2	721	cAa/cTa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117870603	117870603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	118	314	0	ENST00000297338.2:c.469G>C	p.Glu157Gln	p.E157Q	ENST00000297338	NM_006265.2	157	Gaa/Caa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285787	87285787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	135	588	0	ENST00000277120.3:c.124C>G	p.Arg42Gly	p.R42G	ENST00000277120		42	Cgg/Ggg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931926	39931926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	148	675	0	ENST00000378444.4:c.2673C>A	p.Asn891Lys	p.N891K	ENST00000378444	NM_001123385.1	891	aaC/aaA																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224583	123224583	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	111	486	1	ENST00000218089.9:c.3436A>T	p.Thr1146Ser	p.T1146S	ENST00000218089	NM_001042749.1	1146	Act/Tct																																																																														
STAG2	10735	MSKCC	GRCh37	X	123224762	123224762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	114	556	0	ENST00000218089.9:c.3526G>A	p.Glu1176Lys	p.E1176K	ENST00000218089	NM_001042749.1	1176	Gag/Aag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498428	89498428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	102	400	0	ENST00000336596.2:c.2400G>T	p.Lys800Asn	p.K800N	ENST00000336596	NM_005233.5	800	aaG/aaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101353	27101353	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	133	554	0	ENST00000324856.7:c.4635G>T	p.Trp1545Cys	p.W1545C	ENST00000324856	NM_006015.4	1545	tgG/tgT																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5225780	5225780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	237	636	0	ENST00000357368.4:c.2452G>C	p.Gly818Arg	p.G818R	ENST00000357368	NM_002850.3	818	Ggc/Cgc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39262542	39262542	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	64	420	0	ENST00000402219.2:c.964C>A	p.Leu322Ile	p.L322I	ENST00000402219	NM_005633.3	322	Ctt/Att																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812302	212812302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	95	310	0	ENST00000342788.4:c.274A>G	p.Asn92Asp	p.N92D	ENST00000342788	NM_005235.2	92	Aat/Gat																																																																														
VHL	7428	MSKCC	GRCh37	3	10183817	10183826	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCCTACC	CAGCCCTACC	-			P-0033032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	140	599	0	ENST00000256474.2:c.288_297del	p.Pro97ArgfsTer59	p.P97Rfs*59	ENST00000256474	NM_000551.3	96	CAGCCCTACCca/ca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162045	47162045	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	154	452	1	ENST00000409792.3:c.4081C>T	p.Gln1361Ter	p.Q1361*	ENST00000409792	NM_014159.6	1361	Cag/Tag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931382	131931382	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	161	462	0	ENST00000265335.6:c.2087A>T	p.Glu696Val	p.E696V	ENST00000265335		696	gAa/gTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391944	139391944	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	159	846	0	ENST00000277541.6:c.6247C>G	p.His2083Asp	p.H2083D	ENST00000277541	NM_017617.3	2083	Cac/Gac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53253947	53253947	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	138	210	0	ENST00000375401.3:c.125G>T	p.Gly42Val	p.G42V	ENST00000375401	NM_004187.3	42	gGc/gTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411522	63411522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	222	724	0	ENST00000330258.3:c.1645del	p.Arg549GlyfsTer13	p.R549Gfs*13	ENST00000330258	NM_152424.3	549	Cgg/gg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877381	40877381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	47	561	3	ENST00000373198.4:c.2315G>A	p.Gly772Asp	p.G772D	ENST00000373198	NM_133170.3	772	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0033035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	66	606	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11145807	11145814	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTACAT	AGGTACAT	-			P-0033035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	28	384	0	ENST00000344626.4:c.4169_4170+6del		p.X1390_splice	ENST00000344626	NM_003072.3	1390																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	121	449	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	19	458	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	117	351	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	95	320	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	113	333	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625218	69625218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	162	634	0	ENST00000334134.2:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000334134	NM_005247.2	192	cGg/cAg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805351	89805351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149851163		P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	174	492	0	ENST00000389301.3:c.4199G>A	p.Arg1400His	p.R1400H	ENST00000389301	NM_000135.2	1400	cGt/cAt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95596505	95596505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	62	289	0	ENST00000343455.3:c.463G>A	p.Ala155Thr	p.A155T	ENST00000343455	NM_177438.2	155	Gcc/Acc																																																																														
PMAIP1	5366	MSKCC	GRCh37	18	57567412	57567412	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0033064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	239	338	0	ENST00000316660.6:c.3G>A	p.Met1?	p.M1?	ENST00000316660	NM_021127.2	1	atG/atA																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	16	439	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426733	121426736	+	protein_altering_variant	In_Frame_Del	DEL	TCCC	TCCC	G			P-0033076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	176	504	0	ENST00000257555.6:c.424_427delinsG	p.Ser142_His143delinsAsp	p.S142_H143delinsD	ENST00000257555		142	TCCCac/Gac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0033080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	27	604	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	43	468	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	76	849	0	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	220	673	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MYC	4609	MSKCC	GRCh37	8	128750945	128750945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	151	489	1	ENST00000377970.2:c.482C>T	p.Ser161Leu	p.S161L	ENST00000377970	NM_002467.4	161	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879156	151879156	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0033083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	161	714	1	ENST00000262189.6:c.5789C>G	p.Ser1930Ter	p.S1930*	ENST00000262189	NM_170606.2	1930	tCa/tGa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0033085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	162	472	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	264	709	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574021	7574026	+	inframe_deletion	In_Frame_Del	DEL	CACGCC	CACGCC	-			P-0033085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	139	655	0	ENST00000269305.4:c.1001_1006del	p.Gly334_Arg335del	p.G334_R335del	ENST00000269305	NM_001126112.2	334	gGGCGTGag/gag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	106	398	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0033087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	120	194	0				ENST00000310581	NM_198253.2																																																																																
NCOR1	9611	MSKCC	GRCh37	17	15968265	15968265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	176	404	0	ENST00000268712.3:c.5020C>T	p.Pro1674Ser	p.P1674S	ENST00000268712	NM_006311.3	1674	Ccc/Tcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0033094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	163	424	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	799	636	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	763	650	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0033094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	212	440	0	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
PGR	5241	MSKCC	GRCh37	11	100996868	100996869	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	271	641	0	ENST00000325455.5:c.1658dup	p.Ser554GlufsTer20	p.S554Efs*20	ENST00000325455	NM_001202474.3	553	cag/caAg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379644	17379644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	354	352	0	ENST00000359435.4:c.29C>A	p.Thr10Asn	p.T10N	ENST00000359435	NM_001033549.1	10	aCt/aAt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176666804	176666804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	48	408	0	ENST00000439151.2:c.4240G>A	p.Glu1414Lys	p.E1414K	ENST00000439151	NM_022455.4	1414	Gaa/Aaa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200324	138200324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	171	440	1	ENST00000237289.4:c.1742G>A	p.Arg581Lys	p.R581K	ENST00000237289	NM_001270507.1	581	aGa/aAa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117878827	117878827	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0033094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	69	380	0	ENST00000297338.2:c.142A>C	p.Lys48Gln	p.K48Q	ENST00000297338	NM_006265.2	48	Aag/Cag																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073804	8073804	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	67	423	2	ENST00000377482.5:c.855del	p.Arg286GlufsTer9	p.R286Efs*9	ENST00000377482	NM_018948.3	285	ccC/cc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256640	16256640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	85	560	0	ENST00000375759.3:c.3905T>C	p.Val1302Ala	p.V1302A	ENST00000375759	NM_015001.2	1302	gTc/gCc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258454	16258454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	98	630	0	ENST00000375759.3:c.5719G>A	p.Val1907Ile	p.V1907I	ENST00000375759	NM_015001.2	1907	Gtc/Atc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	47	284	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39305247	39305247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	117	659	1	ENST00000373001.3:c.1178G>A	p.Gly393Asp	p.G393D	ENST00000373001	NM_022157.3	393	gGc/gAc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	56	562	0	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851429	156851429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	88	768	0	ENST00000524377.1:c.2386G>A	p.Gly796Ser	p.G796S	ENST00000524377	NM_002529.3	796	Ggc/Agc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	61	305	4	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683247	88683247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	119	685	0	ENST00000372037.3:c.1457G>A	p.Arg486Gln	p.R486Q	ENST00000372037	NM_004329.2	486	cGg/cAg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104359271	104359271	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141359583		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	64	444	2	ENST00000369902.3:c.992G>A	p.Arg331Gln	p.R331Q	ENST00000369902	NM_016169.3	331	cGg/cAg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	117	629	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	105	754	0	ENST00000298229.2:c.1322delA	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344599	118344599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	93	592	1	ENST00000534358.1:c.2725G>T	p.Gly909Cys	p.G909C	ENST00000534358	NM_005933.3	909	Ggt/Tgt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118368739	118368739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	113	648	0	ENST00000534358.1:c.5753A>G	p.Asp1918Gly	p.D1918G	ENST00000534358	NM_005933.3	1918	gAc/gGc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	63	476	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	72	591	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	26	590	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244077	46244077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	102	626	0	ENST00000334344.6:c.2171C>T	p.Pro724Leu	p.P724L	ENST00000334344	NM_152641.2	724	cCc/cTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245712	46245712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	79	462	0	ENST00000334344.6:c.3806C>T	p.Pro1269Leu	p.P1269L	ENST00000334344	NM_152641.2	1269	cCg/cTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	130	776	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865044	57865044	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	118	803	1	ENST00000228682.2:c.2525del	p.Pro842HisfsTer104	p.P842Hfs*104	ENST00000228682	NM_005269.2	841	Ccc/cc																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	41	428	0	ENST00000462284.1:c.961delC	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434356	121434356	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	110	654	1	ENST00000257555.6:c.1124del	p.Gly375AlafsTer9	p.G375Afs*9	ENST00000257555		374	Ggg/gg																																																																														
POLE	5426	MSKCC	GRCh37	12	133245435	133245435	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	56	649	2	ENST00000320574.5:c.1885delG	p.Ala629ProfsTer8	p.A629Pfs*8	ENST00000320574	NM_006231.2	629	Gcc/cc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67477077	67477077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	69	505	1	ENST00000327367.4:c.884G>T	p.Arg295Leu	p.R295L	ENST00000327367	NM_005902.3	295	cGg/cTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99482514	99482514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	109	642	2	ENST00000268035.6:c.3382G>A	p.Ala1128Thr	p.A1128T	ENST00000268035	NM_000875.3	1128	Gcc/Acc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2224005	2224005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	110	858	0	ENST00000326181.6:c.1219A>G	p.Met407Val	p.M407V	ENST00000326181	NM_032271.2	407	Atg/Gtg																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129042	30129042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	120	671	0	ENST00000263025.4:c.724C>T	p.Arg242Trp	p.R242W	ENST00000263025	NM_002746.2	242	Cgg/Tgg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	76	444	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827511	72827511	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	94	808	0	ENST00000268489.5:c.9070del	p.Thr3024GlnfsTer52	p.T3024Qfs*52	ENST00000268489	NM_006885.3	3024	Aca/ca																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	126	488	1	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
NF1	4763	MSKCC	GRCh37	17	29508736	29508736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	78	619	1	ENST00000358273.4:c.663G>T	p.Trp221Cys	p.W221C	ENST00000358273	NM_001042492.2	221	tgG/tgT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243835	41243835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	129	757	1	ENST00000357654.3:c.3713C>A	p.Pro1238His	p.P1238H	ENST00000357654	NM_007294.3	1238	cCt/cAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	206	675	10	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	221	720	0	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	102	730	6	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575123	48575123	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	91	492	1	ENST00000342988.3:c.317A>G	p.Lys106Arg	p.K106R	ENST00000342988	NM_005359.5	106	aAa/aGa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	71	449	3	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231610	5231611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	13	160	0	ENST00000357368.4:c.1865dup	p.Gln623SerfsTer4	p.Q623Sfs*4	ENST00000357368	NM_002850.3	622	cct/ccCt																																																																														
INSR	3643	MSKCC	GRCh37	19	7174729	7174729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	84	467	0	ENST00000302850.5:c.988C>A	p.Pro330Thr	p.P330T	ENST00000302850	NM_000208.2	330	Cca/Aca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299864	15299864	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	116	797	0	ENST00000263388.2:c.1314del	p.Cys440AlafsTer11	p.C440Afs*11	ENST00000263388	NM_000435.2	438	ggG/gg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17387698	17387698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199960321		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	83	605	1	ENST00000359435.4:c.766G>A	p.Glu256Lys	p.E256K	ENST00000359435	NM_001033549.1	256	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214025	36214025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	127	794	0	ENST00000222270.7:c.2851C>T	p.Arg951Cys	p.R951C	ENST00000222270	NM_014727.1	951	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224124	36224124	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	59	691	0	ENST00000222270.7:c.6678delC	p.Thr2227ArgfsTer34	p.T2227Rfs*34	ENST00000222270	NM_014727.1	2225	tCc/tc																																																																														
CIC	23152	MSKCC	GRCh37	19	42799050	42799050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	146	884	1	ENST00000575354.2:c.4534C>T	p.Arg1512Cys	p.R1512C	ENST00000575354	NM_015125.3	1512	Cgt/Tgt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902265	50902265	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	136	852	0	ENST00000440232.2:c.157C>G	p.Gln53Glu	p.Q53E	ENST00000440232	NM_002691.3	53	Cag/Gag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467065	25467065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	110	646	0	ENST00000264709.3:c.1810C>T	p.Arg604Trp	p.R604W	ENST00000264709	NM_175629.2	604	Cgg/Tgg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982440	25982440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	96	534	0	ENST00000435504.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000435504		284	Cga/Tga																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204732730	204732730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	83	596	3	ENST00000302823.3:c.65G>A	p.Cys22Tyr	p.C22Y	ENST00000302823	NM_005214.4	22	tGc/tAc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793290	242793291	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	78	787	0	ENST00000334409.5:c.786dup	p.Ala263ArgfsTer7	p.A263Rfs*7	ENST00000334409	NM_005018.2	262	-/C																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	103	752	6	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560913	9560913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	85	620	2	ENST00000353224.5:c.869C>T	p.Ser290Leu	p.S290L	ENST00000353224	NM_177990.2	290	tCg/tTg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	93	639	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266927	41266927	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139085081		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	107	569	0	ENST00000349496.5:c.598C>T	p.Arg200Cys	p.R200C	ENST00000349496	NM_001904.3	200	Cgt/Tgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	107	572	9	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																														
RHOA	387	MSKCC	GRCh37	3	49405962	49405962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	122	598	0	ENST00000418115.1:c.176A>G	p.Asp59Gly	p.D59G	ENST00000418115	NM_001664.2	59	gAc/gGc																																																																														
MITF	4286	MSKCC	GRCh37	3	70001016	70001016	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	81	502	1	ENST00000352241.4:c.920delA	p.Lys307ArgfsTer6	p.K307Rfs*6	ENST00000352241	NM_198159.2	306	Aaa/aa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	65	460	3	ENST00000289153.2:c.1810delC	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	13	770	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919312	178919312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	40	303	0	ENST00000263967.3:c.797C>A	p.Pro266His	p.P266H	ENST00000263967	NM_006218.2	266	cCt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	20	451	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950763	38950763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	43	360	0	ENST00000357387.3:c.3187G>A	p.Asp1063Asn	p.D1063N	ENST00000357387	NM_152756.3	1063	Gat/Aat																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177608	56177608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	101	469	0	ENST00000399503.3:c.2581G>T	p.Asp861Tyr	p.D861Y	ENST00000399503	NM_005921.1	861	Gat/Tat																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	139	653	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645099	86645099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	63	464	0	ENST00000274376.6:c.1171C>T	p.Arg391Trp	p.R391W	ENST00000274376	NM_002890.2	391	Cgg/Tgg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131930612	131930612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	51	469	0	ENST00000265335.6:c.1849del	p.Arg617GlufsTer26	p.R617Efs*26	ENST00000265335		615	ctA/ct																																																																														
NSD1	64324	MSKCC	GRCh37	5	176694718	176694718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	64	448	0	ENST00000439151.2:c.5302A>G	p.Arg1768Gly	p.R1768G	ENST00000439151	NM_022455.4	1768	Agg/Ggg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176700778	176700779	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	65	359	0	ENST00000439151.2:c.5618_5619delTA	p.Ile1873LysfsTer18	p.I1873Kfs*18	ENST00000439151	NM_022455.4	1872	cAT/c																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225789	26225789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	64	381	1	ENST00000360408.1:c.407C>T	p.Ala136Val	p.A136V	ENST00000360408	NM_003532.2	136	gCg/gTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673037	30673037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201814179		P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	117	774	1	ENST00000376406.3:c.3923G>A	p.Arg1308Gln	p.R1308Q	ENST00000376406	NM_014641.2	1308	cGg/cAg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821533	32821533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	74	701	0	ENST00000354258.4:c.61C>T	p.Pro21Ser	p.P21S	ENST00000354258	NM_000593.5	21	Ccc/Tcc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43745376	43745376	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	121	685	0	ENST00000523873.1:c.289A>G	p.Thr97Ala	p.T97A	ENST00000523873		97	Act/Gct																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946173	13946173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	120	662	0	ENST00000405192.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000405192	NM_001163147.1	308	cGg/cAg																																																																														
MET	4233	MSKCC	GRCh37	7	116340178	116340178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	96	356	0	ENST00000397752.3:c.1040C>T	p.Ala347Val	p.A347V	ENST00000397752	NM_000245.2	347	gCa/gTa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38273432	38273432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	83	888	0	ENST00000425967.3:c.1903G>A	p.Ala635Thr	p.A635T	ENST00000425967	NM_001174067.1	635	Gcc/Acc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054648	5054648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	64	447	0	ENST00000381652.3:c.700C>T	p.Arg234Cys	p.R234C	ENST00000381652	NM_004972.3	234	Cgc/Tgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933594	39933594	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	84	288	0	ENST00000378444.4:c.1005del	p.Ser336ArgfsTer42	p.S336Rfs*42	ENST00000378444	NM_001123385.1	335	ccC/cc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123181284	123181284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	61	206	0	ENST00000218089.9:c.748G>A	p.Ala250Thr	p.A250T	ENST00000218089	NM_001042749.1	250	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	169	550	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	156	431	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	143	423	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	177	464	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	203	304	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057955	27057955	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	117	517	1	ENST00000324856.7:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000324856	NM_006015.4	555	Cag/Tag																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480430	50480430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	149	405	0	ENST00000394963.4:c.392A>G	p.Lys131Arg	p.K131R	ENST00000394963	NM_003076.4	131	aAa/aGa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119775	70119776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	159	459	0	ENST00000245479.2:c.779dup	p.Glu261ArgfsTer35	p.E261Rfs*35	ENST00000245479	NM_000346.3	259	-/C																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98221944	98221944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	43	494	0	ENST00000331920.6:c.2825G>A	p.Arg942Gln	p.R942Q	ENST00000331920	NM_000264.3	942	cGg/cAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039708	47039708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	375	603	1	ENST00000329236.7:c.926G>A	p.Arg309Lys	p.R309K	ENST00000329236	NM_001204466.1	309	aGg/aAg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114901018	114901020	+	frameshift_variant	Frame_Shift_Del	DEL	CAC	CAC	A			P-0033101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	168	446	1	ENST00000543371.1:c.628_630delinsA	p.His210IlefsTer117	p.H210Ifs*117	ENST00000543371	NM_001198531.1	210	CAC/A																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875055	151875055	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	44	216	1	ENST00000262189.6:c.7483C>T	p.Gln2495Ter	p.Q2495*	ENST00000262189	NM_170606.2	2495	Caa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	75	250	8				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453134	140453136	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0033106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	87	433	0	ENST00000288602.6:c.1799_1801del	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	600	gTGAaa/gaa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784869	9784869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	91	557	0	ENST00000377346.4:c.2872G>A	p.Gly958Ser	p.G958S	ENST00000377346	NM_005026.3	958	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	166	548	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0033112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	91	714	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0033112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	28	590	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
KDR	3791	MSKCC	GRCh37	4	55956221	55956221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	84	559	0	ENST00000263923.4:c.3094C>T	p.Arg1032Ter	p.R1032*	ENST00000263923	NM_002253.2	1032	Cga/Tga																																																																														
RET	5979	MSKCC	GRCh37	10	43597813	43597813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	92	761	0	ENST00000355710.3:c.361G>A	p.Val121Ile	p.V121I	ENST00000355710	NM_020975.4	121	Gtc/Atc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910587	29910587	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	104	728	0	ENST00000376809.5:c.127G>T	p.Glu43Ter	p.E43*	ENST00000376809	NM_002116.7	43	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	64	307	0	ENST00000257430.4:c.3929dup	p.Ile1311AspfsTer4	p.I1311Dfs*4	ENST00000257430	NM_000038.5	1309	gaa/gAaa																																																																														
FANCC	2176	MSKCC	GRCh37	9	97864003	97864003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	28	571	0	ENST00000289081.3:c.1663C>T	p.Arg555Ter	p.R555*	ENST00000289081	NM_000136.2	555	Cga/Tga																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551940	150551941	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0033112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	73	421	0	ENST00000369026.2:c.66_67del	p.Ala23ArgfsTer86	p.A23Rfs*86	ENST00000369026	NM_021960.4	22	ggGGcc/ggcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	174	575	0	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141426	11141426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11537676		P-0033119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	55	501	0	ENST00000344626.4:c.3403C>T	p.Arg1135Trp	p.R1135W	ENST00000344626	NM_003072.3	1135	Cgg/Tgg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618395	37618395	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	50	338	0	ENST00000447079.4:c.71C>G	p.Ser24Ter	p.S24*	ENST00000447079	NM_015083.1	24	tCa/tGa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486145	8486145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	68	468	0	ENST00000356435.5:c.2672A>G	p.Tyr891Cys	p.Y891C	ENST00000356435		891	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	149	811	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	62	674	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447842	49447842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	149	639	1	ENST00000301067.7:c.592G>A	p.Ala198Thr	p.A198T	ENST00000301067	NM_003482.3	198	Gcg/Acg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056285	180056285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	176	835	0	ENST00000261937.6:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000261937	NM_182925.4	320	cGg/cAg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998629	100998630	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	58	517	0	ENST00000325455.5:c.1172_1173delinsGT	p.Glu391Gly	p.E391G	ENST00000325455	NM_001202474.3	391	gAG/gGT																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30099965	30099965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	72	537	3	ENST00000331968.5:c.1655C>A	p.Thr552Lys	p.T552K	ENST00000331968	NM_002742.2	552	aCa/aAa																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348982	11348982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	78	482	1	ENST00000332029.2:c.354G>T	p.Lys118Asn	p.K118N	ENST00000332029	NM_003745.1	118	aaG/aaT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004674	16004674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	71	766	1	ENST00000268712.3:c.2580G>T	p.Leu860Phe	p.L860F	ENST00000268712	NM_006311.3	860	ttG/ttT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591865	48591865	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	31	657	0	ENST00000342988.3:c.1028C>A	p.Ser343Ter	p.S343*	ENST00000342988	NM_005359.5	343	tCa/tAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42793373	42793373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	167	617	1	ENST00000575354.2:c.1175C>A	p.Ser392Tyr	p.S392Y	ENST00000575354	NM_015125.3	392	tCt/tAt																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750770	39750770	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	48	668	0	ENST00000361337.2:c.2170C>G	p.Leu724Val	p.L724V	ENST00000361337	NM_003286.2	724	Ctg/Gtg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79965995	79965995	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	45	604	0	ENST00000265081.6:c.659C>A	p.Ser220Ter	p.S220*	ENST00000265081	NM_002439.4	220	tCa/tAa																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271236	26271236	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	69	554	1	ENST00000305910.3:c.377A>T	p.Gln126Leu	p.Q126L	ENST00000305910	NM_003534.2	126	cAg/cTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2955007	2955007	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	62	581	1	ENST00000396946.4:c.2704-1G>T		p.X902_splice	ENST00000396946	NM_032415.4	902																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	177	261	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453134	140453136	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0033121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	264	497	0	ENST00000288602.6:c.1799_1801del	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	600	gTGAaa/gaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217296	123217296	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	179	307	0	ENST00000218089.9:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000218089	NM_001042749.1	984	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	170	465	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	187	518	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	76	548	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2136799	2136799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	141	758	1	ENST00000219476.3:c.4916G>A	p.Arg1639His	p.R1639H	ENST00000219476	NM_000548.3	1639	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830754	3830754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	82	445	0	ENST00000262367.5:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000262367	NM_004380.2	601	cGg/cAg																																																																														
CCND2	894	MSKCC	GRCh37	12	4409146	4409146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	140	366	0	ENST00000261254.3:c.841C>T	p.Pro281Ser	p.P281S	ENST00000261254	NM_001759.3	281	Cct/Tct																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114903736	114903736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	71	502	0	ENST00000543371.1:c.740C>T	p.Pro247Leu	p.P247L	ENST00000543371	NM_001198531.1	247	cCt/cTt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117861	70117861	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	125	446	1	ENST00000245479.2:c.329A>G	p.Asn110Ser	p.N110S	ENST00000245479	NM_000346.3	110	aAc/aGc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374931	45374931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	69	525	0	ENST00000262160.6:c.912C>G	p.Asp304Glu	p.D304E	ENST00000262160	NM_005901.5	304	gaC/gaG																																																																														
ALK	238	MSKCC	GRCh37	2	29448363	29448363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	97	921	0	ENST00000389048.3:c.3136G>A	p.Ala1046Thr	p.A1046T	ENST00000389048	NM_004304.4	1046	Gcc/Acc																																																																														
EP300	2033	MSKCC	GRCh37	22	41568576	41568576	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	88	664	0	ENST00000263253.7:c.4526G>C	p.Trp1509Ser	p.W1509S	ENST00000263253	NM_001429.3	1509	tGg/tCg																																																																														
APC	324	MSKCC	GRCh37	5	112175199	112175199	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	84	243	0	ENST00000257430.4:c.3910del	p.Ile1304Ter	p.I1304*	ENST00000257430	NM_000038.5	1303	cAa/ca																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467831	50467831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	53	390	0	ENST00000331340.3:c.1066G>A	p.Glu356Lys	p.E356K	ENST00000331340	NM_006060.4	356	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877870	151877870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	90	438	0	ENST00000262189.6:c.7075G>A	p.Val2359Met	p.V2359M	ENST00000262189	NM_170606.2	2359	Gtg/Atg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864280	117864283	+	frameshift_variant	Frame_Shift_Del	DEL	GCTG	GCTG	-			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	67	522	0	ENST00000297338.2:c.1374_1377del	p.Ser459GlufsTer4	p.S459Efs*4	ENST00000297338	NM_006265.2	458	gcCAGC/gc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211545	98211545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	74	507	1	ENST00000331920.6:c.3610G>A	p.Val1204Met	p.V1204M	ENST00000331920	NM_000264.3	1204	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	100	297	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	287	743	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434498	121434498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	332	770	0	ENST00000257555.6:c.1262C>T	p.Ser421Phe	p.S421F	ENST00000257555		421	tCc/tTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81929432	81929432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	204	503	0	ENST00000359376.3:c.1093G>A	p.Asp365Asn	p.D365N	ENST00000359376	NM_002661.3	365	Gat/Aat																																																																														
PPARG	5468	MSKCC	GRCh37	3	12422845	12422845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	335	483	2	ENST00000287820.6:c.335C>T	p.Ser112Phe	p.S112F	ENST00000287820	NM_015869.4	112	tCt/tTt																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226252162	226252162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	86	116	0	ENST00000366813.1:c.110A>G	p.Lys37Arg	p.K37R	ENST00000366813		37	aAg/aGg																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983016	149983016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	186	657	1	ENST00000253339.5:c.3242G>A	p.Arg1081Gln	p.R1081Q	ENST00000253339		1081	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164142	47164142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	106	406	0	ENST00000409792.3:c.1984C>T	p.Gln662Ter	p.Q662*	ENST00000409792	NM_014159.6	662	Caa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004664	16004664	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	303	673	0	ENST00000268712.3:c.2590C>T	p.Gln864Ter	p.Q864*	ENST00000268712	NM_006311.3	864	Cag/Tag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983019	201983019	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	14	753	0	ENST00000359651.3:c.868G>T	p.Glu290Ter	p.E290*	ENST00000359651		290	Gag/Tag																																																																														
PGR	5241	MSKCC	GRCh37	11	100999656	100999656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	284	873	0	ENST00000325455.5:c.146C>T	p.Ser49Leu	p.S49L	ENST00000325455	NM_001202474.3	49	tCg/tTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938517	44938517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	157	260	0	ENST00000377967.4:c.3065A>G	p.His1022Arg	p.H1022R	ENST00000377967	NM_021140.2	1022	cAt/cGt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11193150	11193150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	66	496	1	ENST00000361445.4:c.5351G>A	p.Arg1784His	p.R1784H	ENST00000361445	NM_004958.3	1784	cGc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317108	11317108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	104	520	0	ENST00000361445.4:c.386C>T	p.Ala129Val	p.A129V	ENST00000361445	NM_004958.3	129	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101004	27101004	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	56	551	0	ENST00000324856.7:c.4286A>C	p.Asn1429Thr	p.N1429T	ENST00000324856	NM_006015.4	1429	aAc/aCc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101138	27101138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	147	660	1	ENST00000324856.7:c.4420C>T	p.Gln1474Ter	p.Q1474*	ENST00000324856	NM_006015.4	1474	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101375	27101375	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	191	363	0	ENST00000324856.7:c.4661del	p.Pro1554HisfsTer11	p.P1554Hfs*11	ENST00000324856	NM_006015.4	1553	Ccc/cc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058517	72058517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	115	520	0	ENST00000357731.5:c.923C>T	p.Ala308Val	p.A308V	ENST00000357731	NM_173808.2	308	gCg/gTg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115262207	115262207	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	102	313	1	ENST00000438362.2:c.2347C>T	p.Arg783Ter	p.R783*	ENST00000438362	NM_001242891.1	783	Cga/Tga																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117690377	117690377	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	41	544	1	ENST00000369458.3:c.752T>C	p.Leu251Pro	p.L251P	ENST00000369458	NM_024626.3	251	cTa/cCa																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870336	155870336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	129	545	0	ENST00000368323.3:c.503G>A	p.Arg168His	p.R168H	ENST00000368323	NM_006912.5	168	cGc/cAc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843626	156843626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	181	739	0	ENST00000524377.1:c.1052C>A	p.Pro351His	p.P351H	ENST00000524377	NM_002529.3	351	cCc/cAc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724571	162724571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	57	518	1	ENST00000367921.3:c.343G>A	p.Ala115Thr	p.A115T	ENST00000367921	NM_006182.2	115	Gcc/Acc																																																																														
PARP1	142	MSKCC	GRCh37	1	226573273	226573273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	191	576	0	ENST00000366794.5:c.943G>A	p.Val315Ile	p.V315I	ENST00000366794	NM_001618.3	315	Gtc/Atc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332286	70332286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	25	321	0	ENST00000373644.4:c.191C>A	p.Pro64His	p.P64H	ENST00000373644	NM_030625.2	64	cCt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	190	461	2	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720805	89720805	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	85	248	0	ENST00000371953.3:c.956del	p.Thr319IlefsTer2	p.T319Ifs*2	ENST00000371953	NM_000314.4	319	aCt/at																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	131	304	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741954	17741954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	76	217	1	ENST00000250003.3:c.625G>T	p.Gly209Cys	p.G209C	ENST00000250003	NM_002478.4	209	Ggc/Tgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	70	636	1	ENST00000298229.2:c.1322delA	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943290	71943290	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	110	573	0	ENST00000298229.2:c.1622A>C	p.Lys541Thr	p.K541T	ENST00000298229	NM_001567.3	541	aAg/aCg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77090968	77090968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	110	491	0	ENST00000356341.3:c.262G>A	p.Gly88Ser	p.G88S	ENST00000356341	NM_002576.4	88	Ggt/Agt																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94212851	94212851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	58	363	0	ENST00000323929.3:c.391G>A	p.Asp131Asn	p.D131N	ENST00000323929	NM_005591.3	131	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108196880	108196880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	48	387	1	ENST00000278616.4:c.6908del	p.Lys2303ArgfsTer7	p.K2303Rfs*7	ENST00000278616	NM_000051.3	2301	gcA/gc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343381	118343381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	70	355	0	ENST00000534358.1:c.1507C>T	p.Arg503Trp	p.R503W	ENST00000534358	NM_005933.3	503	Cgg/Tgg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376554	118376554	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201447376		P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	23	402	1	ENST00000534358.1:c.9947C>T	p.Ala3316Val	p.A3316V	ENST00000534358	NM_005933.3	3316	gCg/gTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534734	18534734	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	55	429	0	ENST00000266497.5:c.1792A>C	p.Thr598Pro	p.T598P	ENST00000266497		598	Aca/Cca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656251	18656251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	178	441	0	ENST00000266497.5:c.2930C>T	p.Ala977Val	p.A977V	ENST00000266497		977	gCa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433525	49433526	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	61	822	0	ENST00000301067.7:c.8027_8028del	p.Glu2676AlafsTer47	p.E2676Afs*47	ENST00000301067	NM_003482.3	2676	gAG/g																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	52	651	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49439884	49439884	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	115	572	1	ENST00000301067.7:c.4657T>C	p.Cys1553Arg	p.C1553R	ENST00000301067	NM_003482.3	1553	Tgt/Cgt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488312	56488312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	187	461	0	ENST00000267101.3:c.1831C>T	p.Arg611Trp	p.R611W	ENST00000267101	NM_001982.3	611	Cgg/Tgg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117762	115117762	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	68	310	0	ENST00000257566.3:c.673A>C	p.Ser225Arg	p.S225R	ENST00000257566	NM_016569.3	225	Agt/Cgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133220142	133220142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	77	485	0	ENST00000320574.5:c.4295C>T	p.Pro1432Leu	p.P1432L	ENST00000320574	NM_006231.2	1432	cCg/cTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133249308	133249308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	38	721	0	ENST00000320574.5:c.1591G>A	p.Gly531Arg	p.G531R	ENST00000320574	NM_006231.2	531	Gga/Aga																																																																														
POLE	5426	MSKCC	GRCh37	12	133249850	133249850	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	70	347	0	ENST00000320574.5:c.1373A>G	p.Tyr458Cys	p.Y458C	ENST00000320574	NM_006231.2	458	tAt/tGt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562756	21562756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs12867400		P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	119	480	0	ENST00000382592.4:c.1163C>T	p.Ala388Val	p.A388V	ENST00000382592	NM_014572.2	388	gCg/gTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008057	29008057	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139202898		P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	81	395	0	ENST00000282397.4:c.712C>T	p.Arg238Cys	p.R238C	ENST00000282397	NM_002019.4	238	Cgc/Tgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907347	32907347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	89	399	0	ENST00000380152.3:c.1732G>A	p.Gly578Ser	p.G578S	ENST00000380152		578	Ggt/Agt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	164	423	4	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																														
DIS3	22894	MSKCC	GRCh37	13	73355090	73355090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	155	484	0	ENST00000377767.4:c.280G>A	p.Val94Ile	p.V94I	ENST00000377767	NM_014953.3	94	Gtt/Att																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524567	103524568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	40	181	0	ENST00000355739.4:c.2705dup	p.Asn902LysfsTer7	p.N902Kfs*7	ENST00000355739	NM_000123.3	900	caa/cAaa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435263	110435263	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	15	208	0	ENST00000375856.3:c.3138del	p.Ala1047ProfsTer59	p.A1047Pfs*59	ENST00000375856	NM_003749.2	1046	ccC/cc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435613	110435613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	75	372	0	ENST00000375856.3:c.2788C>T	p.Arg930Cys	p.R930C	ENST00000375856	NM_003749.2	930	Cgc/Tgc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068872	30068872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	68	619	1	ENST00000331968.5:c.2057del	p.Leu686Ter	p.L686*	ENST00000331968	NM_002742.2	686	tTa/ta																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30194853	30194853	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	110	491	0	ENST00000331968.5:c.292T>C	p.Tyr98His	p.Y98H	ENST00000331968	NM_002742.2	98	Tat/Cat																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988217	36988217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	53	373	0	ENST00000354822.5:c.436G>A	p.Ala146Thr	p.A146T	ENST00000354822	NM_001079668.2	146	Gcc/Acc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590730	95590730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	111	427	2	ENST00000343455.3:c.1179G>T	p.Gln393His	p.Q393H	ENST00000343455	NM_177438.2	393	caG/caT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708519	43708519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	162	755	1	ENST00000382044.4:c.4777C>A	p.Leu1593Met	p.L1593M	ENST00000382044	NM_001141980.1	1593	Ctg/Atg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473717	67473717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	99	539	0	ENST00000327367.4:c.797C>T	p.Ser266Leu	p.S266L	ENST00000327367	NM_005902.3	266	tCg/tTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476259	88476259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	75	507	0	ENST00000360948.2:c.1873C>A	p.Leu625Met	p.L625M	ENST00000360948	NM_001012338.2	625	Ctg/Atg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354308	354308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	114	498	0	ENST00000262320.3:c.1250G>A	p.Arg417His	p.R417H	ENST00000262320	NM_003502.3	417	cGc/cAc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130243	2130243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	88	610	0	ENST00000219476.3:c.3475C>T	p.Arg1159Trp	p.R1159W	ENST00000219476	NM_000548.3	1159	Cgg/Tgg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222242	2222242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	115	536	0	ENST00000326181.6:c.526G>A	p.Ala176Thr	p.A176T	ENST00000326181	NM_032271.2	176	Gcg/Acg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223535	2223535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	125	554	1	ENST00000326181.6:c.1066C>T	p.Arg356Trp	p.R356W	ENST00000326181	NM_032271.2	356	Cgg/Tgg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632671	3632671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	167	696	1	ENST00000294008.3:c.5177C>T	p.Ala1726Val	p.A1726V	ENST00000294008	NM_032444.2	1726	gCg/gTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640698	3640698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	126	683	1	ENST00000294008.3:c.2941G>A	p.Gly981Arg	p.G981R	ENST00000294008	NM_032444.2	981	Ggg/Agg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	119	455	4	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900611	3900611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	120	578	2	ENST00000262367.5:c.485C>T	p.Ala162Val	p.A162V	ENST00000262367	NM_004380.2	162	gCg/gTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862833	9862833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	84	540	1	ENST00000330684.3:c.2470C>A	p.Leu824Met	p.L824M	ENST00000330684	NM_001134407.1	824	Ctg/Atg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892274	9892274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	80	412	1	ENST00000330684.3:c.2216C>T	p.Ala739Val	p.A739V	ENST00000330684	NM_001134407.1	739	gCt/gTt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50820786	50820786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	65	399	1	ENST00000398568.2:c.1961C>T	p.Thr654Ile	p.T654I	ENST00000398568	NM_001042412.1	654	aCa/aTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348283	89348283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	149	938	0	ENST00000301030.4:c.4667C>T	p.Ala1556Val	p.A1556V	ENST00000301030	NM_001256183.1	1556	gCg/gTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89851341	89851341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	20	428	0	ENST00000389301.3:c.1391G>A	p.Gly464Asp	p.G464D	ENST00000389301	NM_000135.2	464	gGc/gAc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89880998	89880998	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	24	484	0	ENST00000389301.3:c.213del	p.Lys71AsnfsTer7	p.K71Nfs*7	ENST00000389301	NM_000135.2	71	aaA/aa																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108301	8108301	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	123	578	0	ENST00000585124.1:c.923T>G	p.Leu308Arg	p.L308R	ENST00000585124	NM_004217.3	308	cTc/cGc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11984785	11984785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	67	383	0	ENST00000353533.5:c.331G>A	p.Gly111Arg	p.G111R	ENST00000353533	NM_003010.3	111	Gga/Aga																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12044570	12044570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	59	510	0	ENST00000353533.5:c.1193T>C	p.Val398Ala	p.V398A	ENST00000353533	NM_003010.3	398	gTc/gCc																																																																														
NF1	4763	MSKCC	GRCh37	17	29559807	29559807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	73	315	1	ENST00000358273.4:c.3404C>A	p.Ser1135Tyr	p.S1135Y	ENST00000358273	NM_001042492.2	1135	tCt/tAt																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30322675	30322675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	115	578	1	ENST00000322652.5:c.1688G>A	p.Arg563His	p.R563H	ENST00000322652	NM_015355.2	563	cGt/cAt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243953	41243953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	122	639	0	ENST00000357654.3:c.3595G>A	p.Ala1199Thr	p.A1199T	ENST00000357654	NM_007294.3	1199	Gct/Act																																																																														
SPOP	8405	MSKCC	GRCh37	17	47685275	47685275	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	89	415	0	ENST00000347630.2:c.675del	p.Phe225LeufsTer30	p.F225Lfs*30	ENST00000347630	NM_001007230.1	225	ttT/tt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532456	63532456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	129	580	1	ENST00000307078.5:c.2123C>T	p.Ser708Leu	p.S708L	ENST00000307078	NM_004655.3	708	tCg/tTg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612376	1612376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	39	665	0	ENST00000344749.5:c.1643G>A	p.Arg548His	p.R548H	ENST00000344749	NM_001136139.2	548	cGc/cAc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1632402	1632402	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	45	564	0	ENST00000344749.5:c.148C>A	p.Leu50Ile	p.L50I	ENST00000344749	NM_001136139.2	50	Ctt/Att																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226943	2226943	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150855728		P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	91	444	1	ENST00000398665.3:c.4423G>A	p.Ala1475Thr	p.A1475T	ENST00000398665	NM_032482.2	1475	Gcg/Acg																																																																														
GNA11	2767	MSKCC	GRCh37	19	3120995	3120995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	76	383	2	ENST00000078429.4:c.898C>T	p.Arg300Trp	p.R300W	ENST00000078429	NM_002067.2	300	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220303	5220303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	77	633	0	ENST00000357368.4:c.3517C>A	p.Leu1173Met	p.L1173M	ENST00000357368	NM_002850.3	1173	Ctg/Atg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244100	5244100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	36	735	0	ENST00000357368.4:c.1382G>A	p.Arg461His	p.R461H	ENST00000357368	NM_002850.3	461	cGc/cAc																																																																														
INSR	3643	MSKCC	GRCh37	19	7168029	7168029	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	32	523	0	ENST00000302850.5:c.1560G>C	p.Trp520Cys	p.W520C	ENST00000302850	NM_000208.2	520	tgG/tgC																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247892	10247892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	149	607	0	ENST00000340748.4:c.4310G>A	p.Arg1437His	p.R1437H	ENST00000340748		1437	cGc/cAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123688	11123688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	163	509	0	ENST00000344626.4:c.2338G>A	p.Glu780Lys	p.E780K	ENST00000344626	NM_003072.3	780	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132498	11132498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	131	641	0	ENST00000344626.4:c.2714G>A	p.Arg905His	p.R905H	ENST00000344626	NM_003072.3	905	cGc/cAc																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627456	14627456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	106	630	0	ENST00000254322.2:c.614C>T	p.Thr205Ile	p.T205I	ENST00000254322	NM_006145.1	205	aCc/aTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271531	15271531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	130	813	0	ENST00000263388.2:c.6908C>T	p.Ala2303Val	p.A2303V	ENST00000263388	NM_000435.2	2303	gCc/gTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349892	15349892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	106	524	1	ENST00000263377.2:c.3760C>T	p.Arg1254Trp	p.R1254W	ENST00000263377	NM_058243.2	1254	Cgg/Tgg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19261510	19261510	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	201	651	1	ENST00000162023.5:c.35T>G	p.Leu12Arg	p.L12R	ENST00000162023		12	cTg/cGg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221756	36221756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	89	666	0	ENST00000222270.7:c.5425G>A	p.Ala1809Thr	p.A1809T	ENST00000222270	NM_014727.1	1809	Gcc/Acc																																																																														
AXL	558	MSKCC	GRCh37	19	41759547	41759547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	31	650	0	ENST00000301178.4:c.1970C>T	p.Ala657Val	p.A657V	ENST00000301178	NM_021913.4	657	gCc/gTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467204	25467204	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	69	397	0	ENST00000264709.3:c.1671C>A	p.Cys557Ter	p.C557*	ENST00000264709	NM_175629.2	557	tgC/tgA																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505508	25505508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	109	660	0	ENST00000264709.3:c.250G>A	p.Ala84Thr	p.A84T	ENST00000264709	NM_175629.2	84	Gcc/Acc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213372	39213372	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	50	790	0	ENST00000402219.2:c.3595T>G	p.Ser1199Ala	p.S1199A	ENST00000402219	NM_005633.3	1199	Tca/Gca																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224164	39224164	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	32	464	0	ENST00000402219.2:c.2980T>G	p.Leu994Val	p.L994V	ENST00000402219	NM_005633.3	994	Ttg/Gtg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637326	47637326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	153	737	3	ENST00000233146.2:c.460G>A	p.Ala154Thr	p.A154T	ENST00000233146	NM_000251.2	154	Gca/Aca																																																																														
MSH6	2956	MSKCC	GRCh37	2	48025857	48025857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1472949451		P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	83	300	2	ENST00000234420.5:c.741del	p.Lys247AsnfsTer32	p.K247Nfs*32	ENST00000234420	NM_000179.2	245	atA/at																																																																														
MSH6	2956	MSKCC	GRCh37	2	48027196	48027196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	84	487	1	ENST00000234420.5:c.2079delA	p.Lys693AsnfsTer43	p.K693Nfs*43	ENST00000234420	NM_000179.2	692	Aaa/aa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	108	512	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158617517	158617517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	113	461	0	ENST00000263640.3:c.1139G>A	p.Arg380His	p.R380H	ENST00000263640	NM_001105.4	380	cGc/cAc																																																																														
BARD1	580	MSKCC	GRCh37	2	215593542	215593542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	86	361	0	ENST00000260947.4:c.2192G>A	p.Arg731His	p.R731H	ENST00000260947	NM_000465.2	731	cGc/cAc																																																																														
INHA	3623	MSKCC	GRCh37	2	220439887	220439887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	119	708	1	ENST00000243786.2:c.740G>A	p.Arg247His	p.R247H	ENST00000243786	NM_002191.3	247	cGc/cAc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225342941	225342941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	125	536	0	ENST00000264414.4:c.2151G>A	p.Met717Ile	p.M717I	ENST00000264414	NM_003590.4	717	atG/atA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624802	9624802	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	87	388	0	ENST00000353224.5:c.175A>G	p.Ile59Val	p.I59V	ENST00000353224	NM_177990.2	59	Atc/Gtc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714455	40714455	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	25	469	0	ENST00000373198.4:c.3942C>A	p.Cys1314Ter	p.C1314*	ENST00000373198	NM_133170.3	1314	tgC/tgA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385195	41385195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	99	564	0	ENST00000373198.4:c.766G>T	p.Asp256Tyr	p.D256Y	ENST00000373198	NM_133170.3	256	Gac/Tac																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62321444	62321444	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200003693		P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	29	547	1	ENST00000508582.2:c.2218G>A	p.Ala740Thr	p.A740T	ENST00000508582		740	Gcc/Acc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326522	62326522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	102	716	0	ENST00000508582.2:c.3519G>T	p.Gln1173His	p.Q1173H	ENST00000508582		1173	caG/caT																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171607	36171607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	101	305	0	ENST00000300305.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000300305		320	Cga/Tga																																																																														
ERG	2078	MSKCC	GRCh37	21	39817460	39817460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	53	455	0	ENST00000288319.7:c.103G>A	p.Ala35Thr	p.A35T	ENST00000288319	NM_182918.3	35	Gcg/Acg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513259	44513259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	124	495	0	ENST00000291552.4:c.676C>T	p.Arg226Cys	p.R226C	ENST00000291552	NM_006758.2	226	Cgt/Tgt																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29095874	29095874	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	128	644	0	ENST00000328354.6:c.960A>C	p.Lys320Asn	p.K320N	ENST00000328354	NM_007194.3	320	aaA/aaC																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121015	29121015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121908701		P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	156	650	1	ENST00000328354.6:c.542G>A	p.Arg181His	p.R181H	ENST00000328354	NM_007194.3	181	cGt/cAt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12447543	12447543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	99	519	0	ENST00000287820.6:c.782C>T	p.Ala261Val	p.A261V	ENST00000287820	NM_015869.4	261	gCg/gTg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053542	37053542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	87	630	0	ENST00000231790.2:c.629C>A	p.Ala210Asp	p.A210D	ENST00000231790	NM_000249.3	210	gCc/gAc																																																																														
RHOA	387	MSKCC	GRCh37	3	49412959	49412959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	135	646	0	ENST00000418115.1:c.64C>A	p.Leu22Ile	p.L22I	ENST00000418115	NM_001664.2	22	Ctc/Atc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932636	49932636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	123	590	1	ENST00000296474.3:c.3235C>T	p.Arg1079Trp	p.R1079W	ENST00000296474	NM_002447.2	1079	Cgg/Tgg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932677	49932677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	156	679	0	ENST00000296474.3:c.3194C>T	p.Ala1065Val	p.A1065V	ENST00000296474	NM_002447.2	1065	gCg/gTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439262	52439262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	103	610	0	ENST00000460680.1:c.980G>T	p.Ser327Ile	p.S327I	ENST00000460680	NM_004656.3	327	aGc/aTc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582302	119582302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	131	440	1	ENST00000316626.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000316626		367	Cga/Tga																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138402527	138402528	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	46	355	0	ENST00000289153.2:c.2417dup	p.Asn806LysfsTer3	p.N806Kfs*3	ENST00000289153	NM_006219.2	806	aat/aaAt																																																																														
ATR	545	MSKCC	GRCh37	3	142242963	142242963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	55	516	0	ENST00000350721.4:c.4024G>T	p.Gly1342Cys	p.G1342C	ENST00000350721	NM_001184.3	1342	Ggt/Tgt																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374675	149374675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	40	521	0	ENST00000360632.3:c.419G>T	p.Arg140Met	p.R140M	ENST00000360632	NM_015472.4	140	aGg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	126	290	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504039	186504040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	38	281	0	ENST00000323963.5:c.609dup	p.Leu204ThrfsTer17	p.L204Tfs*17	ENST00000323963		202	caa/cAaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	139	615	2	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747837	41747837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	64	323	1	ENST00000226382.2:c.932G>A	p.Ser311Asn	p.S311N	ENST00000226382	NM_003924.3	311	aGc/aAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286238	66286238	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	96	489	0	ENST00000273854.3:c.1448del	p.Asn483ThrfsTer18	p.N483Tfs*18	ENST00000273854	NM_004439.5	483	aAc/ac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356200	66356200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	96	541	1	ENST00000273854.3:c.1297G>A	p.Ala433Thr	p.A433T	ENST00000273854	NM_004439.5	433	Gct/Act																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045827	143045827	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	44	488	0	ENST00000262992.4:c.1807A>G	p.Thr603Ala	p.T603A	ENST00000262992	NM_001101669.1	603	Aca/Gca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530425	187530425	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199995119		P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	84	378	0	ENST00000441802.2:c.10118C>T	p.Ser3373Leu	p.S3373L	ENST00000441802	NM_005245.3	3373	tCa/tTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630890	187630890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	137	501	0	ENST00000441802.2:c.92C>T	p.Pro31Leu	p.P31L	ENST00000441802	NM_005245.3	31	cCt/cTt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	69	395	4	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149456910	149456910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	124	688	0	ENST00000286301.3:c.818C>A	p.Ala273Asp	p.A273D	ENST00000286301	NM_005211.3	273	gCc/gAc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519352	176519352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	135	456	0	ENST00000292408.4:c.758C>T	p.Ala253Val	p.A253V	ENST00000292408	NM_213647.1	253	gCc/gTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522668	176522668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	99	632	0	ENST00000292408.4:c.1765C>A	p.Leu589Met	p.L589M	ENST00000292408	NM_213647.1	589	Ctg/Atg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523709	176523709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	34	619	1	ENST00000292408.4:c.2120G>A	p.Arg707Gln	p.R707Q	ENST00000292408	NM_213647.1	707	cGg/cAg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	31	275	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675592	30675592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	57	913	1	ENST00000376406.3:c.2764C>T	p.Pro922Ser	p.P922S	ENST00000376406	NM_014641.2	922	Cca/Tca																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680481	30680481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	131	618	0	ENST00000376406.3:c.1238C>T	p.Ala413Val	p.A413V	ENST00000376406	NM_014641.2	413	gCg/gTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323230	31323230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	31	524	0	ENST00000412585.2:c.759G>T	p.Glu253Asp	p.E253D	ENST00000412585	NM_005514.6	253	gaG/gaT																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185886	32185886	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	102	524	2	ENST00000375023.3:c.1511-1G>T		p.X504_splice	ENST00000375023	NM_004557.3	504																																																																															
CCND3	896	MSKCC	GRCh37	6	41903822	41903822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	91	513	1	ENST00000372991.4:c.735G>T	p.Glu245Asp	p.E245D	ENST00000372991	NM_001760.3	245	gaG/gaT																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547241	106547241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	26	332	0	ENST00000369096.4:c.478C>T	p.Arg160Cys	p.R160C	ENST00000369096	NM_001198.3	160	Cgc/Tgc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553111	106553111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	92	459	0	ENST00000369096.4:c.1076C>T	p.Thr359Met	p.T359M	ENST00000369096	NM_001198.3	359	aCg/aTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117645566	117645566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	82	483	0	ENST00000368508.3:c.5570T>C	p.Ile1857Thr	p.I1857T	ENST00000368508	NM_002944.2	1857	aTa/aCa																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196093	138196093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	69	271	0	ENST00000237289.4:c.407G>A	p.Arg136His	p.R136H	ENST00000237289	NM_001270507.1	136	cGc/cAc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200459	138200459	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	98	436	0	ENST00000237289.4:c.1877T>C	p.Leu626Pro	p.L626P	ENST00000237289	NM_001270507.1	626	cTg/cCg																																																																														
PARK2	5071	MSKCC	GRCh37	6	161807881	161807881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	28	464	1	ENST00000366898.1:c.1112C>T	p.Ala371Val	p.A371V	ENST00000366898	NM_004562.2	371	gCg/gTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508567	106508567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	57	292	0	ENST00000359195.3:c.561G>T	p.Glu187Asp	p.E187D	ENST00000359195	NM_002649.2	187	gaG/gaT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509748	106509748	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	103	489	2	ENST00000359195.3:c.1742A>T	p.Glu581Val	p.E581V	ENST00000359195	NM_002649.2	581	gAa/gTa																																																																														
MET	4233	MSKCC	GRCh37	7	116412677	116412677	+	intron_variant	Intron	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	221	949	0	ENST00000397752.3:c.3028+634C>T		p.*1010*	ENST00000397752	NM_000245.2	1010																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151860073	151860074	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	98	405	0	ENST00000262189.6:c.10588dup	p.Ser3530PhefsTer36	p.S3530Ffs*36	ENST00000262189	NM_170606.2	3530	tct/tTct																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860481	151860481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	104	580	0	ENST00000262189.6:c.10181G>T	p.Ser3394Ile	p.S3394I	ENST00000262189	NM_170606.2	3394	aGt/aTt																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29197723	29197723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	133	652	1	ENST00000240100.2:c.471C>A	p.Phe157Leu	p.F157L	ENST00000240100	NM_001394.6	157	ttC/ttA																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38133958	38133958	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	307	791	1	ENST00000317025.8:c.3928C>T	p.Arg1310Ter	p.R1310*	ENST00000317025	NM_023034.1	1310	Cga/Tga																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38184347	38184347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	95	483	0	ENST00000317025.8:c.1609G>A	p.Val537Ile	p.V537I	ENST00000317025	NM_023034.1	537	Gtc/Atc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372454	55372454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	137	814	0	ENST00000297316.4:c.1144C>T	p.His382Tyr	p.H382Y	ENST00000297316	NM_022454.3	382	Cat/Tat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002849	69002849	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	42	318	0	ENST00000288368.4:c.2149C>T	p.Gln717Ter	p.Q717*	ENST00000288368	NM_024870.2	717	Cag/Tag																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864944	117864944	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	78	333	0	ENST00000297338.2:c.1165T>G	p.Phe389Val	p.F389V	ENST00000297338	NM_006265.2	389	Ttt/Gtt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974742	21974742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	14	253	0	ENST00000304494.5:c.85C>T	p.Arg29Trp	p.R29W	ENST00000304494	NM_000077.4	29	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974742	21974742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	14	253	0	ENST00000304494.5:c.85C>T	p.Arg29Trp	p.R29W	ENST00000304494	NM_000077.4	29	Cgg/Tgg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285800	87285800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	41	540	0	ENST00000277120.3:c.137G>A	p.Ser46Asn	p.S46N	ENST00000277120		46	aGc/aAc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128246746	128246746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	36	597	1	ENST00000265960.3:c.1183C>T	p.Arg395Ter	p.R395*	ENST00000265960	NM_001006617.1	395	Cga/Tga																																																																														
ABL1	25	MSKCC	GRCh37	9	133759406	133759406	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	99	587	2	ENST00000318560.5:c.1729C>T	p.Arg577Ter	p.R577*	ENST00000318560	NM_005157.4	577	Cga/Tga																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401088	139401088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	33	615	0	ENST00000277541.6:c.3905G>A	p.Arg1302His	p.R1302H	ENST00000277541	NM_017617.3	1302	cGc/cAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417466	139417466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	131	737	1	ENST00000277541.6:c.578G>A	p.Gly193Asp	p.G193D	ENST00000277541	NM_017617.3	193	gGc/gAc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20153857	20153857	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	32	483	0	ENST00000379607.5:c.203del	p.Lys68ArgfsTer4	p.K68Rfs*4	ENST00000379607	NM_001412.3	68	aAg/ag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916463	39916463	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	54	685	1	ENST00000378444.4:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000378444	NM_001123385.1	1514	Cga/Tga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44937657	44937657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	102	447	0	ENST00000377967.4:c.2845C>T	p.Arg949Cys	p.R949C	ENST00000377967	NM_021140.2	949	Cgt/Tgt																																																																														
MED12	9968	MSKCC	GRCh37	X	70346303	70346303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	52	784	0	ENST00000374080.3:c.2654G>T	p.Ser885Ile	p.S885I	ENST00000374080		885	aGc/aTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70353023	70353023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	76	600	0	ENST00000374080.3:c.4578G>T	p.Lys1526Asn	p.K1526N	ENST00000374080		1526	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76855019	76855019	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	86	455	4	ENST00000373344.5:c.5817del	p.Asp1940IlefsTer15	p.D1940Ifs*15	ENST00000373344	NM_000489.3	1939	aaA/aa																																																																														
ATRX	546	MSKCC	GRCh37	X	76891548	76891548	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	65	486	0	ENST00000373344.5:c.4558-1G>T		p.X1520_splice	ENST00000373344	NM_000489.3	1520																																																																															
ESR1	2099	MSKCC	GRCh37	6	152201874	152201874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	34	343	3	ENST00000206249.3:c.728G>A	p.Arg243His	p.R243H	ENST00000206249	NM_000125.3	243	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023094	27023095	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0033134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	12	49	0	ENST00000324856.7:c.200_201del	p.Gln67ProfsTer43	p.Q67Pfs*43	ENST00000324856	NM_006015.4	67	cAG/c																																																																														
VHL	7428	MSKCC	GRCh37	3	10183692	10183693	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	72	590	0	ENST00000256474.2:c.163dup	p.Glu55GlyfsTer77	p.E55Gfs*77	ENST00000256474	NM_000551.3	54	atg/atGg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584457	52584457	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	67	473	0	ENST00000394830.3:c.4556del	p.Lys1519SerfsTer28	p.K1519Sfs*28	ENST00000394830	NM_018313.4	1519	aAg/ag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668643	52668643	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	23	458	0	ENST00000394830.3:c.1276del	p.Met426CysfsTer12	p.M426Cfs*12	ENST00000394830	NM_018313.4	426	Atg/tg																																																																														
CCND3	896	MSKCC	GRCh37	6	41904365	41904365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	103	538	1	ENST00000372991.4:c.643C>A	p.Leu215Met	p.L215M	ENST00000372991	NM_001760.3	215	Ctg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	561	588	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346576	89346576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	85	444	0	ENST00000301030.4:c.6374C>T	p.Ala2125Val	p.A2125V	ENST00000301030	NM_001256183.1	2125	gCc/gTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562669	29562669	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	120	559	0	ENST00000358273.4:c.3749G>C	p.Arg1250Pro	p.R1250P	ENST00000358273	NM_001042492.2	1250	cGg/cCg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627316	37627316	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	135	499	0	ENST00000447079.4:c.1231G>C	p.Ala411Pro	p.A411P	ENST00000447079	NM_015083.1	411	Gct/Cct																																																																														
JAK3	3718	MSKCC	GRCh37	19	17943620	17943620	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	203	750	0	ENST00000458235.1:c.2469del	p.Lys823AsnfsTer22	p.K823Nfs*22	ENST00000458235	NM_000215.3	823	aaG/aa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463533	25463533	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	128	495	0	ENST00000264709.3:c.2149A>C	p.Asn717His	p.N717H	ENST00000264709	NM_175629.2	717	Aac/Cac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399942	139399942	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	93	782	0	ENST00000277541.6:c.4406A>G	p.Asn1469Ser	p.N1469S	ENST00000277541	NM_017617.3	1469	aAc/aGc																																																																														
CIC	23152	MSKCC	GRCh37	19	42793219	42793219	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	94	664	0	ENST00000575354.2:c.1111C>A	p.Gln371Lys	p.Q371K	ENST00000575354	NM_015125.3	371	Cag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	171	257	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	258	420	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55233043	55233043	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs139236063		P-0033149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	320	456	0	ENST00000275493.2:c.1793G>T	p.Gly598Val	p.G598V	ENST00000275493	NM_005228.3	598	gGa/gTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1385	364	600	1	ENST00000275493.2:c.2156G>A	p.Gly719Asp	p.G719D	ENST00000275493	NM_005228.3	719	gGc/gAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223604	55223604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	319	530	1	ENST00000275493.2:c.971G>T	p.Arg324Leu	p.R324L	ENST00000275493	NM_005228.3	324	cGc/cTc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104356996	104356996	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	288	500	0	ENST00000369902.3:c.856del	p.Glu286ArgfsTer27	p.E286Rfs*27	ENST00000369902	NM_016169.3	286	Gag/ag																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820638	44820638	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0033149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	192	428	0	ENST00000377967.4:c.334+1G>C		p.X112_splice	ENST00000377967	NM_021140.2	112																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	145	558	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CIC	23152	MSKCC	GRCh37	19	42798761	42798761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	120	577	1	ENST00000575354.2:c.4333G>A	p.Glu1445Lys	p.E1445K	ENST00000575354	NM_015125.3	1445	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116411640	116411640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	265	745	1	ENST00000397752.3:c.2819C>T	p.Ser940Leu	p.S940L	ENST00000397752	NM_000245.2	940	tCa/tTa																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111907692	111907692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	305	585	0	ENST00000393256.3:c.466G>A	p.Gly156Arg	p.G156R	ENST00000393256	NM_006538.4	156	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	409	798	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830603	72830603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	286	774	0	ENST00000268489.5:c.5978C>T	p.Ser1993Phe	p.S1993F	ENST00000268489	NM_006885.3	1993	tCc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0033167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	288	525	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
ATR	545	MSKCC	GRCh37	3	142243011	142243011	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	518	447	0	ENST00000350721.4:c.3976G>T	p.Glu1326Ter	p.E1326*	ENST00000350721	NM_001184.3	1326	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	517	710	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642456	117642456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	521	752	0	ENST00000368508.3:c.5743G>A	p.Gly1915Arg	p.G1915R	ENST00000368508	NM_002944.2	1915	Gga/Aga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589607	67589612	+	inframe_deletion	In_Frame_Del	DEL	AAGAAA	AAGAAA	-			P-0033167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	179	220	0	ENST00000274335.5:c.1372_1377del	p.Glu458_Lys459del	p.E458_K459del	ENST00000274335		457	cAAGAAAaa/caa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896549	78896549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	2180	847	1	ENST00000306801.3:c.2546G>A	p.Arg849His	p.R849H	ENST00000306801	NM_020761.2	849	cGc/cAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896536	78896536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	987	828	0	ENST00000306801.3:c.2533G>A	p.Ala845Thr	p.A845T	ENST00000306801	NM_020761.2	845	Gcc/Acc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303260	15303260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	576	821	1	ENST00000263388.2:c.268C>T	p.Arg90Cys	p.R90C	ENST00000263388	NM_000435.2	90	Cgt/Tgt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396278	139396278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1192	539	852	1	ENST00000277541.6:c.5560C>T	p.Arg1854Cys	p.R1854C	ENST00000277541	NM_017617.3	1854	Cgc/Tgc																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	229	789	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627647	37627647	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	226	624	1	ENST00000447079.4:c.1562del	p.Ser521Ter	p.S521*	ENST00000447079	NM_015083.1	521	tCa/ta																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250471	26250471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	116	504	1	ENST00000446824.2:c.363G>T	p.Met121Ile	p.M121I	ENST00000446824	NM_021018.2	121	atG/atT																																																																														
BTK	695	MSKCC	GRCh37	X	100615644	100615644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	137	358	0	ENST00000308731.7:c.688G>T	p.Ala230Ser	p.A230S	ENST00000308731	NM_000061.2	230	Gca/Tca																																																																														
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913514		P-0033188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	153	363	0	ENST00000288135.5:c.2466T>A	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaA																																																																														
MAX	4149	MSKCC	GRCh37	14	65544735	65544735	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	278	437	1	ENST00000358664.4:c.191T>C	p.Leu64Pro	p.L64P	ENST00000358664	NM_002382.4	64	cTa/cCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	36	321	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	147	418	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578207	7578215	+	inframe_deletion	In_Frame_Del	DEL	ATGTCGAAA	ATGTCGAAA	-			P-0033201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	210	620	0	ENST00000269305.4:c.634_642del	p.Phe212_His214del	p.F212_H214del	ENST00000269305	NM_001126112.2	212	TTTCGACAT/-																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16097858	16097858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	142	320	0	ENST00000268712.3:c.26A>G	p.Asn9Ser	p.N9S	ENST00000268712	NM_006311.3	9	aAc/aGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971175	21971207	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTCCGCCACTCGGGCGCTGCCCATCATCATGAC	CTCCGCCACTCGGGCGCTGCCCATCATCATGAC	-			P-0033201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	91	295	0	ENST00000304494.5:c.151_183del	p.Val51_Glu61del	p.V51_E61del	ENST00000304494	NM_000077.4	51	GTCATGATGATGGGCAGCGCCCGAGTGGCGGAG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971175	21971207	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTCCGCCACTCGGGCGCTGCCCATCATCATGAC	CTCCGCCACTCGGGCGCTGCCCATCATCATGAC	-			P-0033201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	91	295	0	ENST00000304494.5:c.151_183del	p.Val51_Glu61del	p.V51_E61del	ENST00000304494	NM_000077.4	51	GTCATGATGATGGGCAGCGCCCGAGTGGCGGAG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971175	21971207	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTCCGCCACTCGGGCGCTGCCCATCATCATGAC	CTCCGCCACTCGGGCGCTGCCCATCATCATGAC	-			P-0033201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	91	295	0	ENST00000304494.5:c.151_183del	p.Val51_Glu61del	p.V51_E61del	ENST00000304494	NM_000077.4	51	GTCATGATGATGGGCAGCGCCCGAGTGGCGGAG/-																																																																														
ABL1	25	MSKCC	GRCh37	9	133759366	133759376	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGAGCCTG	CCATGAGCCTG	-			P-0033201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	128	553	0	ENST00000318560.5:c.1691_1701del	p.His564ArgfsTer19	p.H564Rfs*19	ENST00000318560	NM_005157.4	563	gaCCATGAGCCTGcc/gacc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	105	230	1				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27105761	27105761	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	351	373	0	ENST00000324856.7:c.5372C>A	p.Ser1791Ter	p.S1791*	ENST00000324856	NM_006015.4	1791	tCa/tAa																																																																														
AXL	558	MSKCC	GRCh37	19	41744494	41744494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	251	540	0	ENST00000301178.4:c.1114C>G	p.Gln372Glu	p.Q372E	ENST00000301178	NM_021913.4	372	Caa/Gaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879256	151879256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	48	400	0	ENST00000262189.6:c.5689C>T	p.Pro1897Ser	p.P1897S	ENST00000262189	NM_170606.2	1897	Cca/Tca																																																																														
MSI1	4440	MSKCC	GRCh37	12	120794756	120794756	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	204	658	0	ENST00000257552.2:c.601C>T	p.Arg201Ter	p.R201*	ENST00000257552	NM_002442.3	201	Cga/Tga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81971431	81971431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	193	346	0	ENST00000359376.3:c.3121G>A	p.Glu1041Lys	p.E1041K	ENST00000359376	NM_002661.3	1041	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138497	11138497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	220	387	1	ENST00000344626.4:c.3253C>T	p.Leu1085Phe	p.L1085F	ENST00000344626	NM_003072.3	1085	Ctt/Ttt																																																																														
EP300	2033	MSKCC	GRCh37	22	41564865	41564865	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	259	453	1	ENST00000263253.7:c.4166A>T	p.Asn1389Ile	p.N1389I	ENST00000263253	NM_001429.3	1389	aAc/aTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084182	47084182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	88	348	0	ENST00000409792.3:c.7107G>T	p.Met2369Ile	p.M2369I	ENST00000409792	NM_014159.6	2369	atG/atT																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436815	52436815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	191	529	0	ENST00000460680.1:c.1963G>T	p.Glu655Ter	p.E655*	ENST00000460680	NM_004656.3	655	Gag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440374	52440374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	232	429	0	ENST00000460680.1:c.678C>G	p.Ile226Met	p.I226M	ENST00000460680	NM_004656.3	226	atC/atG																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670591	134670591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	153	641	0	ENST00000398015.3:c.502C>G	p.Leu168Val	p.L168V	ENST00000398015	NM_004441.4	168	Ctt/Gtt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808870	1808870	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	734	603	0	ENST00000260795.2:c.2302G>T	p.Glu768Ter	p.E768*	ENST00000260795		768	Gag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522771	67522771	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141974044		P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	75	217	0	ENST00000274335.5:c.268C>T	p.Arg90Trp	p.R90W	ENST00000274335		90	Cgg/Tgg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910601	29910601	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	76	361	0	ENST00000376809.5:c.141C>G	p.Ile47Met	p.I47M	ENST00000376809	NM_002116.7	47	atC/atG																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099409	157099409	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	56	162	0	ENST00000346085.5:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000346085	NM_020732.3	116	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878533	151878533	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	67	569	0	ENST00000262189.6:c.6412C>G	p.Pro2138Ala	p.P2138A	ENST00000262189	NM_170606.2	2138	Cca/Gca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878769	151878769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	59	395	0	ENST00000262189.6:c.6176C>T	p.Ser2059Leu	p.S2059L	ENST00000262189	NM_170606.2	2059	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879084	151879084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	81	604	0	ENST00000262189.6:c.5861C>A	p.Ser1954Tyr	p.S1954Y	ENST00000262189	NM_170606.2	1954	tCt/tAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879343	151879343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	58	385	0	ENST00000262189.6:c.5602C>T	p.Leu1868Phe	p.L1868F	ENST00000262189	NM_170606.2	1868	Ctt/Ttt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884505	151884505	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	63	373	0	ENST00000262189.6:c.4850C>G	p.Ser1617Ter	p.S1617*	ENST00000262189	NM_170606.2	1617	tCa/tGa																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540222	23540222	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	54	262	0	ENST00000380871.4:c.181G>C	p.Glu61Gln	p.E61Q	ENST00000380871	NM_006167.3	61	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	78	463	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412252	139412252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	17	523	0	ENST00000277541.6:c.1393G>A	p.Ala465Thr	p.A465T	ENST00000277541	NM_017617.3	465	Gcc/Acc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78935253	78935253	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143802144		P-0033250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	11	427	0	ENST00000306801.3:c.3665G>A	p.Arg1222His	p.R1222H	ENST00000306801	NM_020761.2	1222	cGt/cAt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411267	63411267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	43	267	1	ENST00000330258.3:c.1900C>T	p.Arg634Cys	p.R634C	ENST00000330258	NM_152424.3	634	Cgt/Tgt																																																																														
RET	5979	MSKCC	GRCh37	10	43612095	43612095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	34	389	0	ENST00000355710.3:c.2200G>A	p.Glu734Lys	p.E734K	ENST00000355710	NM_020975.4	734	Gaa/Aaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435689	56435689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	96	401	0	ENST00000407977.2:c.1448C>T	p.Thr483Met	p.T483M	ENST00000407977		483	aCg/aTg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843706	156843706	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	68	604	0	ENST00000524377.1:c.1132T>G	p.Phe378Val	p.F378V	ENST00000524377	NM_002529.3	378	Ttc/Gtc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46609689	46609689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147672406		P-0033250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	53	481	0	ENST00000263734.3:c.2413G>A	p.Ala805Thr	p.A805T	ENST00000263734	NM_001430.4	805	Gcc/Acc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578370	212578370	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	14	221	0	ENST00000342788.4:c.887A>C	p.Asn296Thr	p.N296T	ENST00000342788	NM_005235.2	296	aAc/aCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	232	468	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711879	89711880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	88	344	0	ENST00000371953.3:c.499dup	p.Thr167AsnfsTer13	p.T167Nfs*13	ENST00000371953	NM_000314.4	166	gta/gtAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42795223	42795223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	114	489	2	ENST00000575354.2:c.2303C>T	p.Pro768Leu	p.P768L	ENST00000575354	NM_015125.3	768	cCg/cTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135782694	135782695	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0033259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	62	362	0	ENST00000298552.3:c.1326_1327del	p.Gly443IlefsTer15	p.G443Ifs*15	ENST00000298552	NM_001162426.1	442	agAGga/agga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0033291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	64	785	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843622	156843622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	105	1171	0	ENST00000524377.1:c.1048C>A	p.Gln350Lys	p.Q350K	ENST00000524377	NM_002529.3	350	Cag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	13	531	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	26	666	4	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923737	131923737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	68	246	0	ENST00000265335.6:c.1007C>G	p.Ser336Cys	p.S336C	ENST00000265335		336	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	469	905	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	468	805	1	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489543	40489543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	146	776	0	ENST00000264657.5:c.707C>T	p.Thr236Met	p.T236M	ENST00000264657	NM_139276.2	236	aCg/aTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95583999	95583999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	306	561	0	ENST00000343455.3:c.1469G>T	p.Arg490Leu	p.R490L	ENST00000343455	NM_177438.2	490	cGc/cTc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030326	180030326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	221	1056	0	ENST00000261937.6:c.3958C>G	p.Arg1320Gly	p.R1320G	ENST00000261937	NM_182925.4	1320	Cgg/Ggg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	344	904	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0033305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	262	574	0				ENST00000310581	NM_198253.2																																																																																
KMT2D	8085	MSKCC	GRCh37	12	49431400	49431400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	341	1010	1	ENST00000301067.7:c.9739del	p.Leu3247CysfsTer83	p.L3247Cfs*83	ENST00000301067	NM_003482.3	3247	Ctg/tg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431404	49431404	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	364	1007	1	ENST00000301067.7:c.9735A>T	p.Leu3245Phe	p.L3245F	ENST00000301067	NM_003482.3	3245	ttA/ttT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290199	15290199	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	495	1156	0	ENST00000263388.2:c.3436T>G	p.Cys1146Gly	p.C1146G	ENST00000263388	NM_000435.2	1146	Tgc/Ggc																																																																														
BARD1	580	MSKCC	GRCh37	2	215632207	215632207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	141	383	0	ENST00000260947.4:c.1567G>T	p.Val523Phe	p.V523F	ENST00000260947	NM_000465.2	523	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	178	993	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242486	+	inframe_deletion	In_Frame_Del	DEL	TTAAGAGAAGCAACATCT	TTAAGAGAAGCAACATCT	-	rs121913440		P-0033314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	398	382	0	ENST00000275493.2:c.2239_2256del	p.Leu747_Ser752del	p.L747_S752del	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCT/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	56	434	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181757	56181757	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0033330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	24	265	0	ENST00000399503.3:c.3983-2del		p.X1328_splice	ENST00000399503	NM_005921.1	1328																																																																															
TP53	7157	MSKCC	GRCh37	17	7578201	7578202	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACA			P-0033330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	55	641	0	ENST00000269305.4:c.645_647dup	p.Val218dup	p.V218dup	ENST00000269305	NM_001126112.2	218	gtg/gtTGTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0033344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	18	337	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117958	70117959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	34	151	0	ENST00000245479.2:c.427dup	p.Trp143LeufsTer109	p.W143Lfs*109	ENST00000245479	NM_000346.3	142	-/T																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	25	772	1	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114218	115114218	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	58	872	0	ENST00000257566.3:c.999del	p.Asn333LysfsTer28	p.N333Kfs*28	ENST00000257566	NM_016569.3	333	aaT/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	238	426	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	116	809	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0033350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	300	286	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444566	78444567	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0033350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	172	376	0	ENST00000370768.2:c.120+2dup		p.X40_splice	ENST00000370768	NM_003902.3	40																																																																															
RB1	5925	MSKCC	GRCh37	13	48923160	48923161	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0033350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	121	326	0	ENST00000267163.4:c.607+2dup		p.X203_splice	ENST00000267163	NM_000321.2	203																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40944447	40944447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	447	716	0	ENST00000373198.4:c.2055G>T	p.Lys685Asn	p.K685N	ENST00000373198	NM_133170.3	685	aaG/aaT																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265289	46265289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	184	353	0	ENST00000371998.3:c.2159A>G	p.Asn720Ser	p.N720S	ENST00000371998		720	aAt/aGt																																																																														
TP63	8626	MSKCC	GRCh37	3	189582154	189582154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	258	492	0	ENST00000264731.3:c.713C>T	p.Thr238Met	p.T238M	ENST00000264731	NM_003722.4	238	aCg/aTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0033352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	246	596	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	515	758	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307414	118307416	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0033355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	10	40	0	ENST00000534358.1:c.200_202delCGG	p.Ala67del	p.A67del	ENST00000534358	NM_005933.3	63	GCG/-																																																																														
MED12	9968	MSKCC	GRCh37	X	70345208	70345208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	345	340	0	ENST00000374080.3:c.2234C>T	p.Ser745Leu	p.S745L	ENST00000374080		745	tCa/tTa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562482	95562482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	71	457	0	ENST00000343455.3:c.4775C>G	p.Pro1592Arg	p.P1592R	ENST00000343455	NM_177438.2	1592	cCg/cGg																																																																														
ALK	238	MSKCC	GRCh37	2	29498289	29498289	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	47	605	0	ENST00000389048.3:c.1891A>T	p.Ser631Cys	p.S631C	ENST00000389048	NM_004304.4	631	Agc/Tgc																																																																														
CASP8	841	MSKCC	GRCh37	2	202141549	202141549	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0033355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	121	348	0	ENST00000358485.4:c.838-1G>T		p.X280_splice	ENST00000358485	NM_001080125.1	280																																																																															
SETD2	29072	MSKCC	GRCh37	3	47165510	47165510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	124	594	1	ENST00000409792.3:c.616G>A	p.Ala206Thr	p.A206T	ENST00000409792	NM_014159.6	206	Gca/Aca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168767	32168767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	297	761	2	ENST00000375023.3:c.4156G>T	p.Gly1386Cys	p.G1386C	ENST00000375023	NM_004557.3	1386	Ggt/Tgt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169209	32169209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1390	383	969	0	ENST00000375023.3:c.3824C>T	p.Ala1275Val	p.A1275V	ENST00000375023	NM_004557.3	1275	gCa/gTa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964420	93964420	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	214	630	0	ENST00000369303.4:c.2477T>A	p.Met826Lys	p.M826K	ENST00000369303	NM_004440.3	826	aTg/aAg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778056	135778056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	512	750	0	ENST00000298552.3:c.2327A>T	p.His776Leu	p.H776L	ENST00000298552	NM_001162426.1	776	cAc/cTc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778083	135778083	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	499	744	0	ENST00000298552.3:c.2300A>C	p.Gln767Pro	p.Q767P	ENST00000298552	NM_001162426.1	767	cAg/cCg																																																																														
MED12	9968	MSKCC	GRCh37	X	70350054	70350073	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCATTCTCCAGGTAGGCCAA	GCATTCTCCAGGTAGGCCAA	T			P-0033355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	222	261	0	ENST00000374080.3:c.4037_4047+9delinsT		p.X1346_splice	ENST00000374080		1346																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0033394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	37	432	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	101	592	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	59	342	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	24	242	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940262	71940262	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146223364		P-0033394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	64	534	2	ENST00000298229.2:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000298229	NM_001567.3	216	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832423	72832423	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	45	443	0	ENST00000268489.5:c.4158del	p.Lys1387ArgfsTer38	p.K1387Rfs*38	ENST00000268489	NM_006885.3	1386	gcC/gc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794868	42794869	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	79	550	0	ENST00000575354.2:c.1953dup	p.Ala652ArgfsTer38	p.A652Rfs*38	ENST00000575354	NM_015125.3	650	gcc/gCcc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257052	198257052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	16	383	0	ENST00000335508.6:c.3890G>A	p.Arg1297His	p.R1297H	ENST00000335508	NM_012433.2	1297	cGt/cAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	199	531	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	225	581	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	208	714	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
BCL6	604	MSKCC	GRCh37	3	187446313	187446313	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137878288		P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	143	498	0	ENST00000232014.4:c.1375C>T	p.Arg459Cys	p.R459C	ENST00000232014	NM_001130845.1	459	Cgc/Tgc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117958	70117959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	73	214	0	ENST00000245479.2:c.427dup	p.Trp143LeufsTer109	p.W143Lfs*109	ENST00000245479	NM_000346.3	142	-/T																																																																														
JAK1	3716	MSKCC	GRCh37	1	65335121	65335121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	145	495	0	ENST00000342505.4:c.520C>T	p.Arg174Ter	p.R174*	ENST00000342505	NM_002227.2	174	Cga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306959	65306959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	151	436	0	ENST00000342505.4:c.2618G>A	p.Arg873His	p.R873H	ENST00000342505	NM_002227.2	873	cGc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	380	602	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720671	89720671	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	111	211	0	ENST00000371953.3:c.822G>A	p.Trp274Ter	p.W274*	ENST00000371953	NM_000314.4	274	tgG/tgA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	44	126	0	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625252	69625252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	193	751	1	ENST00000334134.2:c.541C>T	p.Arg181Cys	p.R181C	ENST00000334134	NM_005247.2	181	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088734	27088735	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	202	584	1	ENST00000324856.7:c.2348_2349del	p.Thr783ArgfsTer33	p.T783Rfs*33	ENST00000324856	NM_006015.4	781	atACac/atac																																																																														
MGA	23269	MSKCC	GRCh37	15	42052630	42052630	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	182	502	0	ENST00000219905.7:c.7301G>C	p.Arg2434Pro	p.R2434P	ENST00000219905	NM_001164273.1	2434	cGg/cCg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500388	99500388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	192	657	0	ENST00000268035.6:c.3821T>C	p.Phe1274Ser	p.F1274S	ENST00000268035	NM_000875.3	1274	tTc/tCc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120253	70120254	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	288	736	0	ENST00000245479.2:c.1257dup	p.Tyr420LeufsTer158	p.Y420Lfs*158	ENST00000245479	NM_000346.3	419	gcc/gCcc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591139	67591140	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACC			P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	84	279	0	ENST00000274335.5:c.1734_1736dup	p.Asp578_Gln579insHis	p.D578_Q579insH	ENST00000274335		578	gac/gACCac																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449438	149449438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	111	440	0	ENST00000286301.3:c.1508C>A	p.Ala503Glu	p.A503E	ENST00000286301	NM_005211.3	503	gCa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	101	422	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
WT1	7490	MSKCC	GRCh37	11	32456555	32456555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	16	24	0	ENST00000332351.3:c.337G>A	p.Ala113Thr	p.A113T	ENST00000332351	NM_024426.4	113	Gct/Act																																																																														
JUN	3725	MSKCC	GRCh37	1	59247865	59247865	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	146	883	0	ENST00000371222.2:c.878A>G	p.Glu293Gly	p.E293G	ENST00000371222	NM_002228.3	293	gAg/gGg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982401	201982402	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	195	635	0	ENST00000359651.3:c.782_783del	p.Leu261ArgfsTer39	p.L261Rfs*39	ENST00000359651		260	tgTCtc/tgtc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851764	63851764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	42	519	0	ENST00000279873.7:c.2542C>G	p.Leu848Val	p.L848V	ENST00000279873	NM_032199.2	848	Ctt/Gtt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28903831	28903831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	135	556	0	ENST00000282397.4:c.2628G>T	p.Met876Ile	p.M876I	ENST00000282397	NM_002019.4	876	atG/atT																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675061	40675061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	115	639	0	ENST00000249776.8:c.25C>A	p.Leu9Met	p.L9M	ENST00000249776	NM_033286.3	9	Ctg/Atg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566819	212566819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	53	318	1	ENST00000342788.4:c.1362C>A	p.Ser454Arg	p.S454R	ENST00000342788	NM_005235.2	454	agC/agA																																																																														
BARD1	580	MSKCC	GRCh37	2	215657156	215657156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	55	275	0	ENST00000260947.4:c.229G>T	p.Asp77Tyr	p.D77Y	ENST00000260947	NM_000465.2	77	Gac/Tac																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437594	52437600	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGCT	CAGGGCT	-			P-0033414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	109	633	0	ENST00000460680.1:c.1561_1567del	p.Val523ProfsTer46	p.V523Pfs*46	ENST00000460680	NM_004656.3	521	AGCCCTGtc/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	102	453	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576904	7576904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	470	590	1	ENST00000269305.4:c.942del	p.Ser315LeufsTer30	p.S315Lfs*30	ENST00000269305	NM_001126112.2	314	tcC/tc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546721	9546721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	66	262	0	ENST00000353224.5:c.1301C>T	p.Ala434Val	p.A434V	ENST00000353224	NM_177990.2	434	gCg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974780	21974780	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	31	91	0	ENST00000304494.5:c.47T>A	p.Leu16Gln	p.L16Q	ENST00000304494	NM_000077.4	16	cTg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974780	21974780	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	31	91	0	ENST00000304494.5:c.47T>A	p.Leu16Gln	p.L16Q	ENST00000304494	NM_000077.4	16	cTg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55220290	55220290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	138	660	1	ENST00000275493.2:c.680C>T	p.Ser227Phe	p.S227F	ENST00000275493	NM_005228.3	227	tCc/tTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106164802	106164802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	119	429	0	ENST00000380013.4:c.3670G>T	p.Ala1224Ser	p.A1224S	ENST00000380013	NM_001127208.2	1224	Gca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	275	479	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0033440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	130	286	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0033440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	79	168	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																																																														
APC	324	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	24	153	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727077	40727077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	132	363	0	ENST00000373198.4:c.3887A>C	p.Glu1296Ala	p.E1296A	ENST00000373198	NM_133170.3	1296	gAg/gCg																																																																														
MGA	23269	MSKCC	GRCh37	15	41961519	41961519	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	245	450	0	ENST00000219905.7:c.427G>T	p.Glu143Ter	p.E143*	ENST00000219905	NM_001164273.1	143	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	36	436	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	50	407	0	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	66	447	0	ENST00000171111.5:c.997G>A	p.Gly333Ser	p.G333S	ENST00000171111	NM_203500.1	333	Ggc/Agc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739114	40739115	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0033441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	37	400	1	ENST00000373198.4:c.3169_3170delinsTT	p.Glu1057Leu	p.E1057L	ENST00000373198	NM_133170.3	1057	GAg/TTg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170011171	170011171	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	47	446	0	ENST00000295797.4:c.1292G>T	p.Gly431Val	p.G431V	ENST00000295797	NM_002740.5	431	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	79	110	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	168	653	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099102	27099103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	114	393	0	ENST00000324856.7:c.3524dup	p.Leu1176IlefsTer17	p.L1176Ifs*17	ENST00000324856	NM_006015.4	1173	atc/atCc																																																																														
TP63	8626	MSKCC	GRCh37	3	189526176	189526176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	187	559	0	ENST00000264731.3:c.440C>T	p.Ser147Leu	p.S147L	ENST00000264731	NM_003722.4	147	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106457	27106457	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	173	517	0	ENST00000324856.7:c.6069del	p.Glu2023AspfsTer7	p.E2023Dfs*7	ENST00000324856	NM_006015.4	2023	gAa/ga																																																																														
EP300	2033	MSKCC	GRCh37	22	41553177	41553177	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	134	452	0	ENST00000263253.7:c.3266A>T	p.Tyr1089Phe	p.Y1089F	ENST00000263253	NM_001429.3	1089	tAc/tTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41553232	41553232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	195	658	1	ENST00000263253.7:c.3321C>A	p.Asp1107Glu	p.D1107E	ENST00000263253	NM_001429.3	1107	gaC/gaA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057834	27057835	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	116	440	0	ENST00000324856.7:c.1542_1543insG	p.Gln515AlafsTer108	p.Q515Afs*108	ENST00000324856	NM_006015.4	514	-/G																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0033444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	34	215	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																														
ATR	545	MSKCC	GRCh37	3	142215219	142215219	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	68	264	0	ENST00000350721.4:c.5882A>C	p.Lys1961Thr	p.K1961T	ENST00000350721	NM_001184.3	1961	aAg/aCg																																																																														
BCL6	604	MSKCC	GRCh37	3	187444590	187444590	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	36	322	0	ENST00000232014.4:c.1637A>T	p.Tyr546Phe	p.Y546F	ENST00000232014	NM_001130845.1	546	tAc/tTc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176516694	176516694	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0033444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	43	262	0	ENST00000292408.4:c.91G>C	p.Glu31Gln	p.E31Q	ENST00000292408	NM_213647.1	31	Gag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	21	106	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0033445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	58	337	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645294	67645294	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	105	414	0	ENST00000264010.4:c.559G>T	p.Glu187Ter	p.E187*	ENST00000264010	NM_006565.3	187	Gaa/Taa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266018	41266622	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	TGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGAT	TGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGAT	-			P-0033445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	55	188	0	ENST00000349496.5:c.16_420del		p.X6_splice	ENST00000349496	NM_001904.3	6	gcTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATt/gct																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186501400	186501400	+	start_lost	Translation_Start_Site	SNP	A	A	C			P-0033445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	62	234	0	ENST00000323963.5:c.1A>C	p.Met1?	p.M1?	ENST00000323963		1	Atg/Ctg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056493	26056493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	31	167	0	ENST00000343677.2:c.164G>T	p.Ser55Ile	p.S55I	ENST00000343677	NM_005319.3	55	aGc/aTc																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983284	149983285	+	missense_variant	Missense_Mutation	DNP	GT	GT	TC			P-0033445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	50	541	1	ENST00000253339.5:c.2973_2974delinsGA	p.Pro992Thr	p.P992T	ENST00000253339		991	ggACcc/ggGAcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	549	887	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728676	190728678	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	31	470	0	ENST00000441310.2:c.2067_2069delAAG	p.Arg690del	p.R690del	ENST00000441310	NM_000534.4	688	aaAAGa/aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424178	49424178	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	64	422	1	ENST00000301067.7:c.13884delC	p.Thr4629ProfsTer11	p.T4629Pfs*11	ENST00000301067	NM_003482.3	4628	ccC/cc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32930727	32930727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	177	598	1	ENST00000380152.3:c.7598C>T	p.Ser2533Phe	p.S2533F	ENST00000380152		2533	tCt/tTt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16068451	16068451	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	15	147	0	ENST00000268712.3:c.460G>T	p.Glu154Ter	p.E154*	ENST00000268712	NM_006311.3	154	Gaa/Taa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061392	38061392	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	179	738	1	ENST00000250448.2:c.597G>A	p.Trp199Ter	p.W199*	ENST00000250448	NM_004496.3	199	tgG/tgA																																																																														
CDH1	999	MSKCC	GRCh37	16	68849482	68849482	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	98	690	0	ENST00000261769.5:c.1385T>C	p.Phe462Ser	p.F462S	ENST00000261769	NM_004360.3	462	tTt/tCt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821914	72821914	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs8044440		P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	40	394	0	ENST00000268489.5:c.10261C>G	p.Pro3421Ala	p.P3421A	ENST00000268489	NM_006885.3	3421	Cca/Gca																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40459510	40459510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	216	613	0	ENST00000345506.4:c.1771G>T	p.Asp591Tyr	p.D591Y	ENST00000345506	NM_003152.3	591	Gat/Tat																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622144	1622144	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	142	755	0	ENST00000344749.5:c.731C>A	p.Ser244Ter	p.S244*	ENST00000344749	NM_001136139.2	244	tCa/tAa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285021	15285021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	165	882	0	ENST00000263388.2:c.4594C>G	p.Leu1532Val	p.L1532V	ENST00000263388	NM_000435.2	1532	Ctg/Gtg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169999038	169999038	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	133	429	0	ENST00000295797.4:c.967C>T	p.Gln323Ter	p.Q323*	ENST00000295797	NM_002740.5	323	Cag/Tag																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64289191	64289191	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	49	491	0	ENST00000370651.3:c.359T>C	p.Ile120Thr	p.I120T	ENST00000370651	NM_003463.4	120	aTt/aCt																																																																														
ETV1	2115	MSKCC	GRCh37	7	14027772	14027772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	42	574	0	ENST00000405192.2:c.72G>C	p.Glu24Asp	p.E24D	ENST00000405192	NM_001163147.1	24	gaG/gaC																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139440202	139440202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	91	88	0	ENST00000277541.6:c.37C>A	p.Leu13Met	p.L13M	ENST00000277541	NM_017617.3	13	Ctg/Atg																																																																														
ATRX	546	MSKCC	GRCh37	X	76972693	76972693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	37	280	0	ENST00000373344.5:c.48G>T	p.Gln16His	p.Q16H	ENST00000373344	NM_000489.3	16	caG/caT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913559	32913559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	189	435	2	ENST00000380152.3:c.5073del	p.Lys1691AsnfsTer15	p.K1691Nfs*15	ENST00000380152		1689	gcA/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	188	409	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	282	526	1	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420315	88420315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	168	449	1	ENST00000360948.2:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000360948	NM_001012338.2	791	Cgg/Tgg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	139	278	2	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	142	328	5	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023747	27023747	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	208	447	0	ENST00000324856.7:c.853G>T	p.Gly285Ter	p.G285*	ENST00000324856	NM_006015.4	285	Gga/Tga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	188	410	2	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	184	448	0	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																														
ACVR1	90	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	120	239	0	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	254	580	0	ENST00000379607.5:c.38G>A	p.Arg13His	p.R13H	ENST00000379607	NM_001412.3	13	cGc/cAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522190	157522190	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	255	581	0	ENST00000346085.5:c.4466delC	p.Pro1489LeufsTer5	p.P1489Lfs*5	ENST00000346085	NM_020732.3	1488	Ccc/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	207	530	0	ENST00000263967.3:c.317G>A	p.Gly106Asp	p.G106D	ENST00000263967	NM_006218.2	106	gGc/gAc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	174	313	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599234	28599234	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	307	789	2	ENST00000253063.3:c.685delC	p.Gln229ArgfsTer18	p.Q229Rfs*18	ENST00000253063	NM_031459.4	227	gCc/gc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	156	740	2	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436343	110436343	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	159	424	0	ENST00000375856.3:c.2058del	p.Lys687SerfsTer140	p.K687Sfs*140	ENST00000375856	NM_003749.2	686	ccC/cc																																																																														
MGA	23269	MSKCC	GRCh37	15	42042041	42042041	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	263	588	0	ENST00000219905.7:c.6240delA	p.Val2081TrpfsTer21	p.V2081Wfs*21	ENST00000219905	NM_001164273.1	2079	gAa/ga																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258036	123258036	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	299	700	0	ENST00000358487.5:c.1645A>G	p.Asn549Asp	p.N549D	ENST00000358487	NM_000141.4	549	Aat/Gat																																																																														
SESN2	83667	MSKCC	GRCh37	1	28601436	28601436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	313	714	0	ENST00000253063.3:c.1121C>T	p.Thr374Ile	p.T374I	ENST00000253063	NM_031459.4	374	aCc/aTc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246670459	246670459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	247	611	0	ENST00000388985.4:c.61G>A	p.Val21Met	p.V21M	ENST00000388985		21	Gtg/Atg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456750	32456750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	267	610	0	ENST00000332351.3:c.142G>A	p.Ala48Thr	p.A48T	ENST00000332351	NM_024426.4	48	Gcc/Acc																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873823	35873823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	179	331	0	ENST00000216797.5:c.28G>A	p.Glu10Lys	p.E10K	ENST00000216797	NM_020529.2	10	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828986	72828986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	276	778	2	ENST00000268489.5:c.7595G>A	p.Cys2532Tyr	p.C2532Y	ENST00000268489	NM_006885.3	2532	tGt/tAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993444	72993444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	344	878	0	ENST00000268489.5:c.601G>A	p.Ala201Thr	p.A201T	ENST00000268489	NM_006885.3	201	Gcc/Acc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244612	41244612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	338	841	1	ENST00000357654.3:c.2936G>A	p.Arg979His	p.R979H	ENST00000357654	NM_007294.3	979	cGt/cAt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621019	1621019	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	368	815	0	ENST00000344749.5:c.1041T>A	p.Asn347Lys	p.N347K	ENST00000344749	NM_001136139.2	347	aaT/aaA																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085979	16085979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	235	509	0	ENST00000281043.3:c.1155C>A	p.Asn385Lys	p.N385K	ENST00000281043	NM_005378.4	385	aaC/aaA																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703569	47703569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	293	688	0	ENST00000233146.2:c.2069A>G	p.Gln690Arg	p.Q690R	ENST00000233146	NM_000251.2	690	cAa/cGa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209110100	209110100	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	322	671	1	ENST00000345146.2:c.463A>T	p.Thr155Ser	p.T155S	ENST00000345146	NM_005896.2	155	Acc/Tcc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138456643	138456643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	282	540	0	ENST00000289153.2:c.707G>T	p.Gly236Val	p.G236V	ENST00000289153	NM_006219.2	236	gGg/gTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31435970	31435970	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	133	250	1	ENST00000344624.3:c.2944G>A	p.Val982Ile	p.V982I	ENST00000344624		982	Gtc/Atc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181822	56181822	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	223	455	0	ENST00000399503.3:c.4046A>G	p.Tyr1349Cys	p.Y1349C	ENST00000399503	NM_005921.1	1349	tAc/tGc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673261	30673262	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	270	587	0	ENST00000376406.3:c.3698dup	p.Asn1233LysfsTer2	p.N1233Kfs*2	ENST00000376406	NM_014641.2	1233	aat/aaAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880236	151880236	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	202	464	0	ENST00000262189.6:c.5088del	p.Ala1697ProfsTer20	p.A1697Pfs*20	ENST00000262189	NM_170606.2	1696	aaA/aa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68981360	68981360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	154	352	2	ENST00000288368.4:c.1432G>A	p.Val478Met	p.V478M	ENST00000288368	NM_024870.2	478	Gtg/Atg																																																																														
MED12	9968	MSKCC	GRCh37	X	70357213	70357213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	169	586	2	ENST00000374080.3:c.5728C>T	p.Arg1910Cys	p.R1910C	ENST00000374080		1910	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418437	49418437	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	281	719	2	ENST00000301067.7:c.15976del	p.Met5327TrpfsTer6	p.M5327Wfs*6	ENST00000301067	NM_003482.3	5326	Ctt/tt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0033474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	99	406	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	155	715	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	25	324	0	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983911	2983911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	65	1008	1	ENST00000396946.4:c.619C>T	p.Arg207Cys	p.R207C	ENST00000396946	NM_032415.4	207	Cgc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937309	76937309	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	20	651	0	ENST00000373344.5:c.3439A>C	p.Lys1147Gln	p.K1147Q	ENST00000373344	NM_000489.3	1147	Aag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	623	1116	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123276974	123276974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	232	340	0	ENST00000358487.5:c.943G>A	p.Ala315Thr	p.A315T	ENST00000358487	NM_000141.4	315	Gcc/Acc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246021859	246021859	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	576	958	0	ENST00000388985.4:c.1015A>T	p.Ile339Phe	p.I339F	ENST00000388985		339	Atc/Ttc																																																																														
NF1	4763	MSKCC	GRCh37	17	29585494	29585494	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	204	358	0	ENST00000358273.4:c.4306G>T	p.Glu1436Ter	p.E1436*	ENST00000358273	NM_001042492.2	1436	Gaa/Taa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288839	33288839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	366	602	1	ENST00000374542.5:c.713G>T	p.Arg238Leu	p.R238L	ENST00000374542	NM_001141970.1	238	cGa/cTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099997	157099997	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	168	283	0	ENST00000346085.5:c.934G>C	p.Gly312Arg	p.G312R	ENST00000346085	NM_020732.3	312	Ggc/Cgc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978521	70978521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	458	700	0	ENST00000276594.2:c.1132G>T	p.Val378Leu	p.V378L	ENST00000276594	NM_024504.3	378	Gtg/Ttg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412746	139412746	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0033481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	499	718	0	ENST00000277541.6:c.1100-2A>T		p.X367_splice	ENST00000277541	NM_017617.3	367																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	216	459	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	75	156	0				ENST00000310581	NM_198253.2																																																																																
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	112	336	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	108	600	4	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292409	15292409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	186	542	0	ENST00000263388.2:c.2770G>A	p.Asp924Asn	p.D924N	ENST00000263388	NM_000435.2	924	Gac/Aac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302560	15302560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	187	607	0	ENST00000263388.2:c.798G>A	p.Trp266Ter	p.W266*	ENST00000263388	NM_000435.2	266	tgG/tgA																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137800	64137801	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	100	655	2	ENST00000334205.4:c.1901_1902delinsTT	p.Ser634Phe	p.S634F	ENST00000334205	NM_003942.2	634	tCC/tTT																																																																														
TET2	54790	MSKCC	GRCh37	4	106158431	106158431	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	36	279	0	ENST00000380013.4:c.3332T>A	p.Leu1111Ter	p.L1111*	ENST00000380013	NM_001127208.2	1111	tTa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	212	560	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120469223	120469223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	140	371	0	ENST00000256646.2:c.3904G>A	p.Glu1302Lys	p.E1302K	ENST00000256646	NM_024408.3	1302	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242646	16242646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	145	448	0	ENST00000375759.3:c.1267C>T	p.Arg423Cys	p.R423C	ENST00000375759	NM_015001.2	423	Cgc/Tgc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18715741	18715741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	101	326	0	ENST00000266497.5:c.3572C>T	p.Thr1191Ile	p.T1191I	ENST00000266497		1191	aCt/aTt																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40447646	40447646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	89	517	1	ENST00000345506.4:c.385C>T	p.Pro129Ser	p.P129S	ENST00000345506	NM_003152.3	129	Ccg/Tcg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32900639	32900639	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41293469		P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	120	458	1	ENST00000380152.3:c.520C>T	p.Arg174Cys	p.R174C	ENST00000380152		174	Cgt/Tgt																																																																														
SRC	6714	MSKCC	GRCh37	20	36030005	36030005	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	172	510	0	ENST00000358208.4:c.1040G>A	p.Gly347Glu	p.G347E	ENST00000358208		347	gGg/gAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16248778	16248778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	144	450	0	ENST00000375759.3:c.1784T>A	p.Phe595Tyr	p.F595Y	ENST00000375759	NM_015001.2	595	tTt/tAt																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46543246	46543247	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	91	493	1	ENST00000262741.5:c.254_255delinsAA	p.Gly85Glu	p.G85E	ENST00000262741	NM_003629.3	85	gGG/gAA																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115280590	115280590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	180	491	1	ENST00000438362.2:c.441T>A	p.Asn147Lys	p.N147K	ENST00000438362	NM_001242891.1	147	aaT/aaA																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200466	67200467	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	229	620	1	ENST00000312629.5:c.660_661delinsTT	p.His221Tyr	p.H221Y	ENST00000312629	NM_003952.2	220	atCCat/atTTat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342713	118342713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	42	200	0	ENST00000534358.1:c.839C>T	p.Pro280Leu	p.P280L	ENST00000534358	NM_005933.3	280	cCt/cTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373988	118373989	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	199	379	0	ENST00000534358.1:c.7381_7382delinsAA	p.Gly2461Lys	p.G2461K	ENST00000534358	NM_005933.3	2461	GGa/AAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445896	49445896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	273	758	0	ENST00000301067.7:c.1570G>A	p.Glu524Lys	p.E524K	ENST00000301067	NM_003482.3	524	Gaa/Aaa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865180	57865181	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	187	723	1	ENST00000228682.2:c.2657_2658delinsTT	p.Pro886Leu	p.P886L	ENST00000228682	NM_005269.2	886	cCC/cTT																																																																														
MSI1	4440	MSKCC	GRCh37	12	120796832	120796832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	184	529	0	ENST00000257552.2:c.427G>A	p.Asp143Asn	p.D143N	ENST00000257552	NM_002442.3	143	Gac/Aac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28622445	28622445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	78	527	0	ENST00000241453.7:c.1172C>T	p.Pro391Leu	p.P391L	ENST00000241453	NM_004119.2	391	cCt/cTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913752	32913752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	47	421	0	ENST00000380152.3:c.5260G>A	p.Asp1754Asn	p.D1754N	ENST00000380152		1754	Gat/Aat																																																																														
AKT1	207	MSKCC	GRCh37	14	105239592	105239592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	188	452	0	ENST00000349310.3:c.953C>T	p.Pro318Leu	p.P318L	ENST00000349310	NM_001014432.1	318	cCc/cTc																																																																														
MGA	23269	MSKCC	GRCh37	15	41988918	41988918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	158	463	1	ENST00000219905.7:c.1710G>T	p.Lys570Asn	p.K570N	ENST00000219905	NM_001164273.1	570	aaG/aaT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714110	43714110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	247	671	0	ENST00000382044.4:c.4043G>A	p.Gly1348Glu	p.G1348E	ENST00000382044	NM_001141980.1	1348	gGg/gAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29585489	29585489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	45	311	0	ENST00000358273.4:c.4301G>A	p.Arg1434Lys	p.R1434K	ENST00000358273	NM_001042492.2	1434	aGa/aAa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244816	41244816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	99	695	0	ENST00000357654.3:c.2732G>A	p.Gly911Glu	p.G911E	ENST00000357654	NM_007294.3	911	gGa/gAa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740664	58740665	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	141	500	0	ENST00000305921.3:c.1569_1570delinsTT	p.Gln524Ter	p.Q524*	ENST00000305921	NM_003620.3	523	gcCCaa/gcTTaa																																																																														
INSR	3643	MSKCC	GRCh37	19	7117321	7117321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	175	620	0	ENST00000302850.5:c.3895C>T	p.Pro1299Ser	p.P1299S	ENST00000302850	NM_000208.2	1299	Cca/Tca																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271769	15271770	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	194	664	0	ENST00000263388.2:c.6669_6670delinsAA	p.Ala2224Thr	p.A2224T	ENST00000263388	NM_000435.2	2223	gcGGct/gcAAct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211342	36211342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	205	594	0	ENST00000222270.7:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000222270	NM_014727.1	365	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022469	31022470	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	70	250	0	ENST00000375687.4:c.1954_1955delinsAA	p.Gly652Asn	p.G652N	ENST00000375687	NM_015338.5	652	GGc/AAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022832	31022832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	145	494	0	ENST00000375687.4:c.2317G>A	p.Glu773Lys	p.E773K	ENST00000375687	NM_015338.5	773	Gag/Aag																																																																														
SRC	6714	MSKCC	GRCh37	20	36030027	36030028	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	166	528	0	ENST00000358208.4:c.1062_1063delinsAA	p.Gly355Arg	p.G355R	ENST00000358208		354	aaGGgg/aaAAgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980848	40980849	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	131	462	0	ENST00000373198.4:c.1637_1638delinsAA	p.Arg546Gln	p.R546Q	ENST00000373198	NM_133170.3	546	cGG/cAA																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484813	57484813	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	169	525	0	ENST00000371085.3:c.793C>G	p.Arg265Gly	p.R265G	ENST00000371085	NM_000516.4	265	Cgc/Ggc																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119595342	119595342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	106	306	1	ENST00000316626.5:c.827C>T	p.Pro276Leu	p.P276L	ENST00000316626		276	cCa/cTa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138400876	138400876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	160	449	0	ENST00000289153.2:c.2437G>T	p.Asp813Tyr	p.D813Y	ENST00000289153	NM_006219.2	813	Gat/Tat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141045	55141045	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	75	411	0	ENST00000257290.5:c.1691C>A	p.Ser564Ter	p.S564*	ENST00000257290	NM_006206.4	564	tCa/tAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535282	66535282	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	97	383	0	ENST00000273854.3:c.179A>C	p.Glu60Ala	p.E60A	ENST00000273854	NM_004439.5	60	gAa/gCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542404	187542404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	95	418	0	ENST00000441802.2:c.5336C>T	p.Ser1779Leu	p.S1779L	ENST00000441802	NM_005245.3	1779	tCa/tTa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564306	86564306	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	72	264	0	ENST00000274376.6:c.38C>G	p.Pro13Arg	p.P13R	ENST00000274376	NM_002890.2	13	cCg/cGg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441307	149441307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	189	607	0	ENST00000286301.3:c.1732C>T	p.Pro578Ser	p.P578S	ENST00000286301	NM_005211.3	578	Ccc/Tcc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495483	149495483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	190	710	1	ENST00000261799.4:c.3164C>T	p.Ser1055Phe	p.S1055F	ENST00000261799	NM_002609.3	1055	tCc/tTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149514562	149514562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	122	349	0	ENST00000261799.4:c.382C>T	p.Leu128Phe	p.L128F	ENST00000261799	NM_002609.3	128	Ctc/Ttc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520291	176520291	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	128	574	0	ENST00000292408.4:c.1210G>C	p.Ala404Pro	p.A404P	ENST00000292408	NM_213647.1	404	Gcc/Ccc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176684093	176684094	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	189	508	1	ENST00000439151.2:c.4907_4908delinsTT	p.Ser1636Phe	p.S1636F	ENST00000439151	NM_022455.4	1636	tCC/tTT																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324596	31324597	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	240	384	1	ENST00000412585.2:c.211_212delinsTT	p.Pro71Leu	p.P71L	ENST00000412585	NM_005514.6	71	CCg/TTg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192467	138192467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	74	335	0	ENST00000237289.4:c.103G>A	p.Gly35Arg	p.G35R	ENST00000237289	NM_001270507.1	35	Ggg/Agg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468132	50468133	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	100	394	1	ENST00000331340.3:c.1367_1368delinsAA	p.Gly456Glu	p.G456E	ENST00000331340	NM_006060.4	456	gGG/gAA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268035	55268036	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	229	503	2	ENST00000275493.2:c.2875_2876delinsTT	p.Pro959Leu	p.P959L	ENST00000275493	NM_005228.3	959	CCa/TTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845697	151845697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	191	521	0	ENST00000262189.6:c.13315G>T	p.Val4439Phe	p.V4439F	ENST00000262189	NM_170606.2	4439	Gtc/Ttc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878325	151878325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	234	556	0	ENST00000262189.6:c.6620C>T	p.Pro2207Leu	p.P2207L	ENST00000262189	NM_170606.2	2207	cCt/cTt																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23539126	23539127	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	195	461	0	ENST00000380871.4:c.312_313delinsAA	p.Asp105Asn	p.D105N	ENST00000380871	NM_006167.3	104	ttGGac/ttAAac																																																																														
JAK2	3717	MSKCC	GRCh37	9	5081811	5081811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	236	334	0	ENST00000381652.3:c.2521C>T	p.Pro841Ser	p.P841S	ENST00000381652	NM_004972.3	841	Cct/Tct																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393712	139393712	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	365	515	0	ENST00000277541.6:c.5935-1G>A		p.X1979_splice	ENST00000277541	NM_017617.3	1979																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53228248	53228249	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	209	309	0	ENST00000375401.3:c.2153_2154delinsTT	p.Ala718Val	p.A718V	ENST00000375401	NM_004187.3	718	gCC/gTT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421839	49421840	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0033494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	219	641	0	ENST00000301067.7:c.14467_14468delinsT	p.Pro4823SerfsTer35	p.P4823Sfs*35	ENST00000301067	NM_003482.3	4823	CCc/Tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	132	557	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	199	693	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27102140	27102140	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	53	645	0	ENST00000324856.7:c.5066A>T	p.Asp1689Val	p.D1689V	ENST00000324856	NM_006015.4	1689	gAt/gTt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942939	71943961	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCATTGTGCCCAGGTCTCCTGATTTTCGGTCTGGTGCTCTCCCAGGTAGATTCTGCGCAGAATCTGCAGGGCCTTTCAGCTTCACCCTTGGGGTCCCCTGTGATCTCCAGGGGCTCTGCTCACACATACAGACAGACTCAGGCCATCCACACAGACCATGTGTGCCCAATGAGGACCCCCCCCTCCCCCAGGGAAGGTGTGGGTGTGTGCAGGGGCCTGCCCATGTCACAGCGTCTGGTGGGCTCAGCGGGAGGATCCTCTCACTGCAGCTTTGAGAGGCAGAAGGGAGAGTTGGGAGCCCTCTGAGGATGACCCAGGCCTTCCTCTCTTGCTTGCCTTAACAGGGAACAAGGGGGCTGTGGGCGTCTCCTTCATGTTTAATGGCACCTCATTTGGCTTTGTGAATTGTCACCTCACCTCGGGAAATGAGAAGACGGCTCGGTGAGGGGGCGCCTTTCCCATGGTCTCTTTACACCCATCCCATTCACCTGAGGCCTGTTCCCGCTCCCATACCCTAGCCCATGACCCTCCCGCAGGCCTGTCTCCAGAGACCCCCTGCTCTCTTATCCCAATTCAAGACCCTTCTGTTCCTGACCCTAACCTTGTCCCCAGGGGCCCGGATCTTTACCCCATCCCTGACTCCTGAGACTTCTTCCCTTTATGCCTATCCCTGACTTCTGGCCCTGACCCTGGGGATCTACCCCTCCCCACCACGCACCCCTCACCCTAGGAGGAACCAAAACTACTTGGACATCCTGCGGCTGCTCTCGCTGGGCGACCGGCAGCTCAATGCCTTTGACATCTCTCTGCGTTTCACACACCTCTTCTGGTTTGGGGACCTCAACTACCGCCTGGACATGGATATCCAGGTGCGAGCAGGGCCCTGCCATGGCTGTAGGGAGGCTAAGGGCCACATGGGCTATCACCCCTGGCTCTGGCTCCGGAGGAATGTTTCTAGCCTTTGTGTCCTCCACCCCAGGAGATCCTGAACTACATCAGCAGGAAAGAGTTTGAGCCCCTCC	GGCATTGTGCCCAGGTCTCCTGATTTTCGGTCTGGTGCTCTCCCAGGTAGATTCTGCGCAGAATCTGCAGGGCCTTTCAGCTTCACCCTTGGGGTCCCCTGTGATCTCCAGGGGCTCTGCTCACACATACAGACAGACTCAGGCCATCCACACAGACCATGTGTGCCCAATGAGGACCCCCCCCTCCCCCAGGGAAGGTGTGGGTGTGTGCAGGGGCCTGCCCATGTCACAGCGTCTGGTGGGCTCAGCGGGAGGATCCTCTCACTGCAGCTTTGAGAGGCAGAAGGGAGAGTTGGGAGCCCTCTGAGGATGACCCAGGCCTTCCTCTCTTGCTTGCCTTAACAGGGAACAAGGGGGCTGTGGGCGTCTCCTTCATGTTTAATGGCACCTCATTTGGCTTTGTGAATTGTCACCTCACCTCGGGAAATGAGAAGACGGCTCGGTGAGGGGGCGCCTTTCCCATGGTCTCTTTACACCCATCCCATTCACCTGAGGCCTGTTCCCGCTCCCATACCCTAGCCCATGACCCTCCCGCAGGCCTGTCTCCAGAGACCCCCTGCTCTCTTATCCCAATTCAAGACCCTTCTGTTCCTGACCCTAACCTTGTCCCCAGGGGCCCGGATCTTTACCCCATCCCTGACTCCTGAGACTTCTTCCCTTTATGCCTATCCCTGACTTCTGGCCCTGACCCTGGGGATCTACCCCTCCCCACCACGCACCCCTCACCCTAGGAGGAACCAAAACTACTTGGACATCCTGCGGCTGCTCTCGCTGGGCGACCGGCAGCTCAATGCCTTTGACATCTCTCTGCGTTTCACACACCTCTTCTGGTTTGGGGACCTCAACTACCGCCTGGACATGGATATCCAGGTGCGAGCAGGGCCCTGCCATGGCTGTAGGGAGGCTAAGGGCCACATGGGCTATCACCCCTGGCTCTGGCTCCGGAGGAATGTTTCTAGCCTTTGTGTCCTCCACCCCAGGAGATCCTGAACTACATCAGCAGGAAAGAGTTTGAGCCCCTCC	-			P-0033509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	28	23	0	ENST00000298229.2:c.1615+280_1894del		p.X539_splice	ENST00000298229	NM_001567.3	539																																																																															
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	536	622	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112176020	112176020	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	154	312	0	ENST00000257430.4:c.4729G>T	p.Glu1577Ter	p.E1577*	ENST00000257430	NM_000038.5	1577	Gaa/Taa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188078	11188078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	252	557	0	ENST00000361445.4:c.6016G>C	p.Val2006Leu	p.V2006L	ENST00000361445	NM_004958.3	2006	Gtc/Ctc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830866	72830870	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAC	CGGAC	-			P-0033528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	388	656	0	ENST00000268489.5:c.5711_5715del	p.Gly1904GlufsTer23	p.G1904Efs*23	ENST00000268489	NM_006885.3	1904	gGTCCG/g																																																																														
AKT2	208	MSKCC	GRCh37	19	40761173	40761173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	273	572	0	ENST00000392038.2:c.179G>A	p.Cys60Tyr	p.C60Y	ENST00000392038	NM_001626.4	60	tGc/tAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275057	41275057	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	210	494	0	ENST00000349496.5:c.1223T>C	p.Leu408Pro	p.L408P	ENST00000349496	NM_001904.3	408	cTt/cCt																																																																														
APC	324	MSKCC	GRCh37	5	112174424	112174424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	155	298	0	ENST00000257430.4:c.3133C>T	p.Gln1045Ter	p.Q1045*	ENST00000257430	NM_000038.5	1045	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711892	89711892	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	148	492	0	ENST00000371953.3:c.510del	p.Gln171ArgfsTer12	p.Q171Rfs*12	ENST00000371953	NM_000314.4	170	agT/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	429	664	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56494902	56494902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	389	517	0	ENST00000267101.3:c.3259A>G	p.Met1087Val	p.M1087V	ENST00000267101	NM_001982.3	1087	Atg/Gtg																																																																														
FH	2271	MSKCC	GRCh37	1	241667368	241667368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	251	501	0	ENST00000366560.3:c.1082A>G	p.Asn361Ser	p.N361S	ENST00000366560	NM_000143.3	361	aAt/aGt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678001	117678001	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	265	587	0	ENST00000368508.3:c.3932G>C	p.Arg1311Pro	p.R1311P	ENST00000368508	NM_002944.2	1311	cGa/cCa																																																																														
ATRX	546	MSKCC	GRCh37	X	76875906	76875906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	259	337	0	ENST00000373344.5:c.5229G>T	p.Arg1743Ser	p.R1743S	ENST00000373344	NM_000489.3	1743	agG/agT																																																																														
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	17	352	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	32	247	0	ENST00000288602.6:c.1803A>T	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaT																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	60	691	3	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	34	356	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561465	9561465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	37	440	0	ENST00000353224.5:c.317C>A	p.Pro106His	p.P106H	ENST00000353224	NM_177990.2	106	cCc/cAc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932289	36932289	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	50	631	0	ENST00000361632.4:c.2180A>G	p.Tyr727Cys	p.Y727C	ENST00000361632		727	tAt/tGt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117921	70117922	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	29	317	0	ENST00000245479.2:c.390dup	p.His131AlafsTer121	p.H131Afs*121	ENST00000245479	NM_000346.3	130	ttg/ttGg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090446	37090446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	52	338	0	ENST00000231790.2:c.2041G>A	p.Ala681Thr	p.A681T	ENST00000231790	NM_000249.3	681	Gct/Act																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004882	150004882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	41	459	0	ENST00000253339.5:c.1343G>A	p.Gly448Glu	p.G448E	ENST00000253339		448	gGg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0033596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	36	404	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578231	7578232	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	87	593	0	ENST00000269305.4:c.617dup	p.Leu206PhefsTer3	p.L206Ffs*3	ENST00000269305	NM_001126112.2	206	ttg/ttTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078351	5078353	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0033596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	11	367	0	ENST00000381652.3:c.2040_2042del	p.Leu681del	p.L681del	ENST00000381652	NM_004972.3	680	CTG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	180	736	1	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562347	95562347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140875148		P-0033597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	88	364	0	ENST00000343455.3:c.4910C>T	p.Ser1637Leu	p.S1637L	ENST00000343455	NM_177438.2	1637	tCg/tTg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163246	32163246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1259	193	891	1	ENST00000375023.3:c.5980C>T	p.Pro1994Ser	p.P1994S	ENST00000375023	NM_004557.3	1994	Ccc/Tcc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662427	67662427	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	142	681	0	ENST00000264010.4:c.1673C>G	p.Ser558Cys	p.S558C	ENST00000264010	NM_006565.3	558	tCt/tGt																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46532639	46532639	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	79	385	2	ENST00000262741.5:c.439C>T	p.Gln147Ter	p.Q147*	ENST00000262741	NM_003629.3	147	Cag/Tag																																																																														
CBL	867	MSKCC	GRCh37	11	119148638	119149422	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATTGGAACCCATTGACTAGATTAGTGAATTTGTGTGTATGTGGTTTCACTTTAAACCCTGGAGCTTAAAATAGGACCCAGACTAGATGCTTTCTGGTTTAATAAAAAATAAACCACTGTTGTGACATTTTTATATAAGCAAAATTTGTATAGGAAACAAGTCTTCACTTTTTCTGTTAACATTTATAATTGCAGTTATTTATTCAACTAATAGTCTTTTAATTTTTTTTAATCAAAGGAACAATATGAATTATACTGTGAGATGGGCTCCACATTCCAACTATGTAAAATATGTGCTGAAAATGATAAGGATGTAAAGATTGAGCCCTGTGGACACCTCATGTGCACATCCTGTCTTACATCCTGGCAGGTACGGATCTAAACAGCGACTTTTTTCAGCTATGTAATAACCTTGGAAAATTCGGTATTATATAGCCTTTACTGATACAAGGGGTGGCCTGGCTTTTGGGGTTAGGTTTAAACTTTTACTTTTTTTTGATCTCTAGGAAATGTATTTTCTAGTAGATTAATATTTTAAGTATTTTCAGATGCATCTGTTACTATCTTTTGCTTCTTCTGCAGGAATCAGAAGGTCAGGGCTGTCCTTTCTGCCGATGTGAAATTAAAGGTACTGAACCCATCGTGGTAGATCCGTTTGATCCTAGAGGGAGTGGCAGCCTGTTGAGGCAAGGAGCAGAGGGAGCTCCCTCCCCAAATTATGATGATGATGATGATGAACGAGCTGATGATACTCTCTTCATGATGAAGGAATTGGCTGGTGCCAA	CATTGGAACCCATTGACTAGATTAGTGAATTTGTGTGTATGTGGTTTCACTTTAAACCCTGGAGCTTAAAATAGGACCCAGACTAGATGCTTTCTGGTTTAATAAAAAATAAACCACTGTTGTGACATTTTTATATAAGCAAAATTTGTATAGGAAACAAGTCTTCACTTTTTCTGTTAACATTTATAATTGCAGTTATTTATTCAACTAATAGTCTTTTAATTTTTTTTAATCAAAGGAACAATATGAATTATACTGTGAGATGGGCTCCACATTCCAACTATGTAAAATATGTGCTGAAAATGATAAGGATGTAAAGATTGAGCCCTGTGGACACCTCATGTGCACATCCTGTCTTACATCCTGGCAGGTACGGATCTAAACAGCGACTTTTTTCAGCTATGTAATAACCTTGGAAAATTCGGTATTATATAGCCTTTACTGATACAAGGGGTGGCCTGGCTTTTGGGGTTAGGTTTAAACTTTTACTTTTTTTTGATCTCTAGGAAATGTATTTTCTAGTAGATTAATATTTTAAGTATTTTCAGATGCATCTGTTACTATCTTTTGCTTCTTCTGCAGGAATCAGAAGGTCAGGGCTGTCCTTTCTGCCGATGTGAAATTAAAGGTACTGAACCCATCGTGGTAGATCCGTTTGATCCTAGAGGGAGTGGCAGCCTGTTGAGGCAAGGAGCAGAGGGAGCTCCCTCCCCAAATTATGATGATGATGATGATGAACGAGCTGATGATACTCTCTTCATGATGAAGGAATTGGCTGGTGCCAA	-			P-0033597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	36	109	0	ENST00000264033.4:c.1095+84_1430del		p.X365_splice	ENST00000264033	NM_005188.3	365																																																																															
CDKN1B	1027	MSKCC	GRCh37	12	12871181	12871184	+	frameshift_variant	Frame_Shift_Del	DEL	TCCG	TCCG	-			P-0033597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	46	190	0	ENST00000228872.4:c.410_413del	p.Pro137ArgfsTer7	p.P137Rfs*7	ENST00000228872	NM_004064.3	136	gaTCCG/ga																																																																														
AXL	558	MSKCC	GRCh37	19	41745090	41745090	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	123	583	0	ENST00000301178.4:c.1156A>T	p.Arg386Trp	p.R386W	ENST00000301178	NM_021913.4	386	Agg/Tgg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6038854	6038854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	137	608	0	ENST00000265849.7:c.590G>T	p.Gly197Val	p.G197V	ENST00000265849	NM_000535.5	197	gGc/gTc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245374	53245374	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	109	283	0	ENST00000375401.3:c.663A>T	p.Glu221Asp	p.E221D	ENST00000375401	NM_004187.3	221	gaA/gaT																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266713	198266713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776846119		P-0033602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	72	430	1	ENST00000335508.6:c.2219G>A	p.Gly740Glu	p.G740E	ENST00000335508	NM_012433.2	740	gGa/gAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107136	27107137	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0033602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	108	527	0	ENST00000324856.7:c.6749_6750del	p.Glu2250ValfsTer27	p.E2250Vfs*27	ENST00000324856	NM_006015.4	2249	tcAGag/tcag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279672	123279672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	68	314	0	ENST00000358487.5:c.760C>T	p.His254Tyr	p.H254Y	ENST00000358487	NM_000141.4	254	Cac/Tac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099564	157099582	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGGCCAGGCCGACCCC	GGGCGGCCAGGCCGACCCC	TGG			P-0033602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	30	106	2	ENST00000346085.5:c.501_519delinsTGG	p.Gly169ArgfsTer6	p.G169Rfs*6	ENST00000346085	NM_020732.3	167	gcGGGCGGCCAGGCCGACCCC/gcTGG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	71	702	2	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																														
STK40	83931	MSKCC	GRCh37	1	36807505	36807505	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200986219		P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	132	691	0	ENST00000373129.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000373129	NM_032017.1	387	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65335079	65335079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	98	526	0	ENST00000342505.4:c.562G>A	p.Glu188Lys	p.E188K	ENST00000342505	NM_002227.2	188	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	103	455	3	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																														
NUF2	83540	MSKCC	GRCh37	1	163307847	163307847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	34	274	0	ENST00000271452.3:c.473C>A	p.Ala158Glu	p.A158E	ENST00000271452	NM_145697.2	158	gCa/gAa																																																																														
ATM	472	MSKCC	GRCh37	11	108235879	108235879	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139379666		P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	40	420	0	ENST00000278616.4:c.8921C>T	p.Pro2974Leu	p.P2974L	ENST00000278616	NM_000051.3	2974	cCg/cTg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022747	12022747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	49	386	0	ENST00000396373.4:c.853G>A	p.Val285Met	p.V285M	ENST00000396373	NM_001987.4	285	Gtg/Atg																																																																														
RECQL	5965	MSKCC	GRCh37	12	21636438	21636438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	53	629	0	ENST00000421138.2:c.572C>A	p.Pro191Gln	p.P191Q	ENST00000421138		191	cCa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	44	419	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434477	110434477	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	124	498	0	ENST00000375856.3:c.3924del	p.Pro1309ArgfsTer22	p.P1309Rfs*22	ENST00000375856	NM_003749.2	1308	ggG/gg																																																																														
MGA	23269	MSKCC	GRCh37	15	42019471	42019471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	75	574	0	ENST00000219905.7:c.3524C>A	p.Pro1175His	p.P1175H	ENST00000219905	NM_001164273.1	1175	cCc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	142	617	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40371848	40371848	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143092033		P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1370	84	885	0	ENST00000293328.3:c.563C>T	p.Pro188Leu	p.P188L	ENST00000293328	NM_012448.3	188	cCg/cTg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59821924	59821924	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	65	433	0	ENST00000259008.2:c.2126T>C	p.Leu709Pro	p.L709P	ENST00000259008	NM_032043.2	709	cTc/cCc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615748	1615748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139492270		P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	128	737	1	ENST00000344749.5:c.1523C>T	p.Thr508Met	p.T508M	ENST00000344749	NM_001136139.2	508	aCg/aTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222853	5222853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	86	457	0	ENST00000357368.4:c.2950C>T	p.Pro984Ser	p.P984S	ENST00000357368	NM_002850.3	984	Ccg/Tcg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794950	42794950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141594034		P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	145	693	1	ENST00000575354.2:c.2030G>A	p.Arg677Gln	p.R677Q	ENST00000575354	NM_015125.3	677	cGg/cAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	99	476	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30648410	30648410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	81	434	0	ENST00000359013.4:c.35T>A	p.Leu12Gln	p.L12Q	ENST00000359013	NM_001024847.2	12	cTg/cAg																																																																														
RHOA	387	MSKCC	GRCh37	3	49397811	49397811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	114	407	1	ENST00000418115.1:c.413C>T	p.Pro138Leu	p.P138L	ENST00000418115	NM_001664.2	138	cCg/cTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52588757	52588757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	102	371	0	ENST00000394830.3:c.4271C>T	p.Pro1424Leu	p.P1424L	ENST00000394830	NM_018313.4	1424	cCg/cTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189860	66189860	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs144528528		P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	58	490	0	ENST00000273854.3:c.3086A>G	p.Gln1029Arg	p.Q1029R	ENST00000273854	NM_004439.5	1029	cAg/cGg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057042	180057042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	94	682	1	ENST00000261937.6:c.577G>A	p.Val193Met	p.V193M	ENST00000261937	NM_182925.4	193	Gtg/Atg																																																																														
IRF4	3662	MSKCC	GRCh37	6	398830	398830	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	82	411	0	ENST00000380956.4:c.640T>C	p.Cys214Arg	p.C214R	ENST00000380956	NM_001195286.1	214	Tgc/Cgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140508764	140508764	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	95	436	0	ENST00000288602.6:c.536A>G	p.Asp179Gly	p.D179G	ENST00000288602	NM_004333.4	179	gAc/gGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874196	151874196	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	63	480	0	ENST00000262189.6:c.8342T>C	p.Ile2781Thr	p.I2781T	ENST00000262189	NM_170606.2	2781	aTt/aCt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484207	8484207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	106	494	1	ENST00000356435.5:c.3325C>T	p.Arg1109Cys	p.R1109C	ENST00000356435		1109	Cgt/Tgt																																																																														
ABL1	25	MSKCC	GRCh37	9	133753937	133753937	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	86	455	0	ENST00000318560.5:c.1406A>G	p.Tyr469Cys	p.Y469C	ENST00000318560	NM_005157.4	469	tAt/tGt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933209	39933209	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	161	399	0	ENST00000378444.4:c.1390A>G	p.Thr464Ala	p.T464A	ENST00000378444	NM_001123385.1	464	Acg/Gcg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426111	47426111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	66	377	4	ENST00000377045.4:c.631C>T	p.Arg211Cys	p.R211C	ENST00000377045	NM_001654.4	211	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	379	444	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	344	506	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257104	198257104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	106	450	0	ENST00000335508.6:c.3838C>G	p.Leu1280Val	p.L1280V	ENST00000335508	NM_012433.2	1280	Ctc/Gtc																																																																														
PARP1	142	MSKCC	GRCh37	1	226573362	226573362	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	188	367	0	ENST00000366794.5:c.854A>T	p.Asp285Val	p.D285V	ENST00000366794	NM_001618.3	285	gAt/gTt																																																																														
AXL	558	MSKCC	GRCh37	19	41744035	41744035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1302	283	514	0	ENST00000301178.4:c.970C>A	p.Leu324Ile	p.L324I	ENST00000301178	NM_021913.4	324	Ctt/Att																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185155257	185155257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	79	306	0	ENST00000265026.3:c.498G>T	p.Glu166Asp	p.E166D	ENST00000265026	NM_004721.4	166	gaG/gaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638006	176638006	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	195	513	0	ENST00000439151.2:c.2606A>T	p.Tyr869Phe	p.Y869F	ENST00000439151	NM_022455.4	869	tAc/tTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412743	63412743	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	223	475	0	ENST00000330258.3:c.424A>T	p.Arg142Ter	p.R142*	ENST00000330258	NM_152424.3	142	Aga/Tga																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206648248	206648248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	159	576	0	ENST00000367120.3:c.269C>T	p.Ser90Phe	p.S90F	ENST00000367120	NM_014002.3	90	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543829	212543829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	139	325	0	ENST00000342788.4:c.1570C>T	p.Arg524Cys	p.R524C	ENST00000342788	NM_005235.2	524	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0033610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	114	340	0				ENST00000310581	NM_198253.2																																																																																
RAD50	10111	MSKCC	GRCh37	5	131953840	131953840	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0033610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	137	329	0	ENST00000265335.6:c.3243T>G	p.Tyr1081Ter	p.Y1081*	ENST00000265335		1081	taT/taG																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	277	335	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	441	688	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	285	474	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	171	254	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	121	492	0	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	41	290	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																														
SMO	6608	MSKCC	GRCh37	7	128845063	128845063	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	175	655	0	ENST00000249373.3:c.557A>T	p.Lys186Met	p.K186M	ENST00000249373	NM_005631.4	186	aAg/aTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247364	153247366	+	missense_variant	Missense_Mutation	ONP	CTC	CTC	TTT			P-0033617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	78	255	0	ENST00000281708.4:c.1436_1438delinsAAA	p.Arg479_Asp480delinsGlnAsn	p.R479_D480delinsQN	ENST00000281708	NM_033632.3	479	cGAGat/cAAAat																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	93	481	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	150	563	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967635	26967635	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	32	394	0	ENST00000381527.3:c.778G>T	p.Gly260Ter	p.G260*	ENST00000381527	NM_001260.1	260	Gga/Tga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247105	53247105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	76	443	0	ENST00000375401.3:c.395G>A	p.Arg132His	p.R132H	ENST00000375401	NM_004187.3	132	cGt/cAt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	23	501	0	ENST00000347630.2:c.373T>G	p.Phe125Val	p.F125V	ENST00000347630	NM_001007230.1	125	Ttt/Gtt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164811	47164811	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	68	419	0	ENST00000409792.3:c.1315C>G	p.Pro439Ala	p.P439A	ENST00000409792	NM_014159.6	439	Cct/Gct																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	91	489	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	100	773	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46215212	46215212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	35	293	2	ENST00000334344.6:c.647C>T	p.Ser216Phe	p.S216F	ENST00000334344	NM_152641.2	216	tCc/tTc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467933	50467933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	45	436	0	ENST00000331340.3:c.1168C>T	p.Pro390Ser	p.P390S	ENST00000331340	NM_006060.4	390	Ccg/Tcg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476406	88476406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	48	526	0	ENST00000360948.2:c.1726G>A	p.Asp576Asn	p.D576N	ENST00000360948	NM_001012338.2	576	Gat/Aat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	27	472	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390071	89390071	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	37	338	1	ENST00000336596.2:c.820C>T	p.Arg274Ter	p.R274*	ENST00000336596	NM_005233.5	274	Cga/Tga																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367239	50367239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	10	301	0	ENST00000331340.3:c.46G>A	p.Glu16Lys	p.E16K	ENST00000331340	NM_006060.4	16	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76909601	76909601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	59	414	2	ENST00000373344.5:c.4304C>T	p.Ser1435Phe	p.S1435F	ENST00000373344	NM_000489.3	1435	tCc/tTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041220	29041220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	38	841	1	ENST00000282397.4:c.208G>A	p.Glu70Lys	p.E70K	ENST00000282397	NM_002019.4	70	Gaa/Aaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483916	88483916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	48	830	1	ENST00000360948.2:c.1654G>A	p.Val552Ile	p.V552I	ENST00000360948	NM_001012338.2	552	Gtc/Atc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2220690	2220690	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	15	664	0	ENST00000326181.6:c.307C>G	p.Leu103Val	p.L103V	ENST00000326181	NM_032271.2	103	Ctg/Gtg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639093	3639093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	92	791	1	ENST00000294008.3:c.4546G>A	p.Gly1516Arg	p.G1516R	ENST00000294008	NM_032444.2	1516	Ggg/Agg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469955	25469955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	171	838	1	ENST00000264709.3:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000264709	NM_175629.2	363	Ccc/Tcc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566769	212566769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	26	522	0	ENST00000342788.4:c.1412C>T	p.Thr471Ile	p.T471I	ENST00000342788	NM_005235.2	471	aCc/aTc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247417	71247418	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	114	582	1	ENST00000318789.4:c.115_116delinsAA	p.Gly39Lys	p.G39K	ENST00000318789	NM_032682.5	39	GGa/AAa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729963	41729963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	60	840	0	ENST00000242208.4:c.566G>A	p.Gly189Glu	p.G189E	ENST00000242208	NM_002192.2	189	gGg/gAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76876001	76876001	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0033649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3	26	223	0	ENST00000373344.5:c.5135-1G>A		p.X1712_splice	ENST00000373344	NM_000489.3	1712																																																																															
VHL	7428	MSKCC	GRCh37	3	10188200	10188200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs5030811		P-0033656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	269	523	0	ENST00000256474.2:c.343C>T	p.His115Tyr	p.H115Y	ENST00000256474	NM_000551.3	115	Cac/Tac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717695	89717696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	225	431	0	ENST00000371953.3:c.723dupT	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	240	-/T																																																																														
TERT	7015	MSKCC	GRCh37	5	1294451	1294451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	94	483	0	ENST00000310581.5:c.550G>A	p.Ala184Thr	p.A184T	ENST00000310581	NM_198253.2	184	Gcc/Acc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798139	32798139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	143	672	0	ENST00000374899.4:c.1540G>T	p.Ala514Ser	p.A514S	ENST00000374899	NM_018833.2	514	Gcc/Tcc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992750	68992750	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	202	648	0	ENST00000288368.4:c.1715C>G	p.Ser572Ter	p.S572*	ENST00000288368	NM_024870.2	572	tCa/tGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	46	97	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	364	607	2	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324690	31324690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	12	112	1	ENST00000412585.2:c.118G>A	p.Gly40Ser	p.G40S	ENST00000412585	NM_005514.6	40	Ggc/Agc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324201	31324201	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1071652		P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	11	151	0	ENST00000412585.2:c.362G>A	p.Ser121Asn	p.S121N	ENST00000412585	NM_005514.6	121	aGc/aAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100371	8100372	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	209	741	2	ENST00000346208.3:c.345_346delinsAA	p.Ser115_Pro116delinsArgThr	p.S115_P116delinsRT	ENST00000346208		115	agCCcc/agAAcc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115822	8115822	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	171	542	2	ENST00000346208.3:c.1168T>A	p.Ser390Thr	p.S390T	ENST00000346208		390	Tcg/Acg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869490	102869490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	134	380	1	ENST00000307046.8:c.151G>T	p.Glu51Ter	p.E51*	ENST00000307046	NM_001111285.1	51	Gag/Tag																																																																														
MSI1	4440	MSKCC	GRCh37	12	120805836	120805836	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	269	642	1	ENST00000257552.2:c.242C>A	p.Ser81Ter	p.S81*	ENST00000257552	NM_002442.3	81	tCg/tAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133209004	133209005	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	127	687	1	ENST00000320574.5:c.6226_6227delinsCT	p.Gly2076Leu	p.G2076L	ENST00000320574	NM_006231.2	2076	GGc/CTc																																																																														
RB1	5925	MSKCC	GRCh37	13	49033949	49033949	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	98	392	0	ENST00000267163.4:c.2086A>T	p.Arg696Ter	p.R696*	ENST00000267163	NM_000321.2	696	Aga/Tga																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633326	3633326	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	181	819	0	ENST00000294008.3:c.4925A>C	p.His1642Pro	p.H1642P	ENST00000294008	NM_032444.2	1642	cAt/cCt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217063	2217063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	157	607	1	ENST00000398665.3:c.2518C>T	p.Leu840Phe	p.L840F	ENST00000398665	NM_032482.2	840	Ctt/Ttt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15298032	15298033	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	237	788	1	ENST00000263388.2:c.1723dup	p.Thr575AsnfsTer48	p.T575Nfs*48	ENST00000263388	NM_000435.2	575	acg/aAcg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300092	15300092	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	163	658	0	ENST00000263388.2:c.1184G>T	p.Cys395Phe	p.C395F	ENST00000263388	NM_000435.2	395	tGc/tTc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138431130	138431130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	67	367	1	ENST00000289153.2:c.1319G>T	p.Trp440Leu	p.W440L	ENST00000289153	NM_006219.2	440	tGg/tTg																																																																														
ATR	545	MSKCC	GRCh37	3	142286985	142286985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	75	442	1	ENST00000350721.4:c.71A>G	p.Glu24Gly	p.E24G	ENST00000350721	NM_001184.3	24	gAg/gGg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253810	153253810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	64	416	0	ENST00000281708.4:c.923G>T	p.Cys308Phe	p.C308F	ENST00000281708	NM_033632.3	308	tGt/tTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518242	187518242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	105	303	2	ENST00000441802.2:c.12452G>A	p.Cys4151Tyr	p.C4151Y	ENST00000441802	NM_005245.3	4151	tGc/tAc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449862	149449862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	148	622	0	ENST00000286301.3:c.1202C>A	p.Pro401His	p.P401H	ENST00000286301	NM_005211.3	401	cCc/cAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681084	117681084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	89	466	0	ENST00000368508.3:c.3536C>T	p.Ser1179Leu	p.S1179L	ENST00000368508	NM_002944.2	1179	tCa/tTa																																																																														
MET	4233	MSKCC	GRCh37	7	116412179	116412179	+	intron_variant	Intron	SNP	A	A	G			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	79	653	0	ENST00000397752.3:c.3028+136A>G		p.*1010*	ENST00000397752	NM_000245.2	1010																																																																															
TCEB1	6921	MSKCC	GRCh37	8	74858903	74858903	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	248	786	2	ENST00000284811.8:c.301C>G	p.Leu101Val	p.L101V	ENST00000284811		101	Ctg/Gtg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44941988	44941988	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	30	206	0	ENST00000377967.4:c.3241del	p.Thr1081ProfsTer2	p.T1081Pfs*2	ENST00000377967	NM_021140.2	1080	Aaa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	102	280	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
AKT1	207	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	256	476	0	ENST00000349310.3:c.155T>A	p.Leu52His	p.L52H	ENST00000349310	NM_001014432.1	52	cTc/cAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0033672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	167	285	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644826	67644826	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	161	305	0	ENST00000264010.4:c.95delG	p.Gly32AlafsTer30	p.G32Afs*30	ENST00000264010	NM_006565.3	31	Ggg/gg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31451746	31451746	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	71	186	0	ENST00000344624.3:c.2576A>G	p.His859Arg	p.H859R	ENST00000344624		859	cAt/cGt																																																																														
ABL1	25	MSKCC	GRCh37	9	133738311	133738311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	24	372	0	ENST00000318560.5:c.711G>A	p.Met237Ile	p.M237I	ENST00000318560	NM_005157.4	237	atG/atA																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099406	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAA	-	rs775084783		P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	60	202	0	ENST00000346085.5:c.363_383del	p.Gln125_Gln131del	p.Q125_Q131del	ENST00000346085	NM_020732.3	115	CAGCAGCAGCAGCAGCAGCAA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	275	589	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	155	335	0	ENST00000369535.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000369535	NM_002524.4	12	Ggt/Agt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	137	269	0	ENST00000342988.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000342988	NM_005359.5	493	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112173912	112173913	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	96	261	0	ENST00000257430.4:c.2624dup	p.Arg876AlafsTer36	p.R876Afs*36	ENST00000257430	NM_000038.5	874	tca/tcAa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117600	70117601	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	176	400	1	ENST00000245479.2:c.72dup	p.Thr25HisfsTer227	p.T25Hfs*227	ENST00000245479	NM_000346.3	23	agc/agCc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911624	114911624	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	263	306	0	ENST00000543371.1:c.1142A>T	p.Asn381Ile	p.N381I	ENST00000543371	NM_001198531.1	381	aAc/aTc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661996	227661996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	82	426	0	ENST00000305123.5:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000305123	NM_005544.2	487	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	120	368	0	ENST00000263967.3:c.3062A>T	p.Tyr1021Phe	p.Y1021F	ENST00000263967	NM_006218.2	1021	tAc/tTc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782136	9782136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	44	562	0	ENST00000377346.4:c.2159G>A	p.Arg720Gln	p.R720Q	ENST00000377346	NM_005026.3	720	cGg/cAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261140	16261140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	44	359	0	ENST00000375759.3:c.8405C>T	p.Ser2802Leu	p.S2802L	ENST00000375759	NM_015001.2	2802	tCa/tTa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262695	16262696	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	18	297	0	ENST00000375759.3:c.9967_9968del	p.Thr3323SerfsTer24	p.T3323Sfs*24	ENST00000375759	NM_015001.2	3320	ctCAca/ctca																																																																														
CDC42	998	MSKCC	GRCh37	1	22412955	22412955	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	28	134	1	ENST00000344548.3:c.202C>T	p.Arg68Ter	p.R68*	ENST00000344548	NM_001039802.1	68	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	51	525	0	ENST00000324856.7:c.1650dupC	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518437	204518437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201947927		P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	32	377	0	ENST00000367182.3:c.1100C>T	p.Ser367Leu	p.S367L	ENST00000367182	NM_001278516.1	367	tCg/tTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	17	381	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392700	118392700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	58	495	0	ENST00000534358.1:c.11732C>T	p.Ser3911Leu	p.S3911L	ENST00000534358	NM_005933.3	3911	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	87	472	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	54	420	1	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	59	371	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109720	115109720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	54	606	0	ENST00000257566.3:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000257566	NM_016569.3	720	Gaa/Aaa																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	19	500	3	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
POLE	5426	MSKCC	GRCh37	12	133240697	133240697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	38	608	0	ENST00000320574.5:c.2599G>A	p.Val867Ile	p.V867I	ENST00000320574	NM_006231.2	867	Gtc/Atc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21620098	21620098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	15	529	0	ENST00000382592.4:c.68G>A	p.Arg23His	p.R23H	ENST00000382592	NM_014572.2	23	cGt/cAt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	23	128	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396908	396908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	63	532	2	ENST00000262320.3:c.118G>A	p.Ala40Thr	p.A40T	ENST00000262320	NM_003502.3	40	Gcc/Acc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226294	2226294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	50	649	1	ENST00000326181.6:c.1907C>T	p.Thr636Met	p.T636M	ENST00000326181	NM_032271.2	636	aCg/aTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81944250	81944250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147396004		P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	33	511	0	ENST00000359376.3:c.1859C>T	p.Thr620Met	p.T620M	ENST00000359376	NM_002661.3	620	aCg/aTg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980435	7980435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	28	451	0	ENST00000319144.4:c.1148C>T	p.Thr383Met	p.T383M	ENST00000319144	NM_001139.2	383	aCg/aTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5240271	5240271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	10	676	0	ENST00000357368.4:c.1643del	p.Pro548ArgfsTer37	p.P548Rfs*37	ENST00000357368	NM_002850.3	548	cCg/cg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244328	5244328	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115982731		P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	10	622	1	ENST00000357368.4:c.1154C>T	p.Thr385Ile	p.T385I	ENST00000357368	NM_002850.3	385	aCa/aTa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100015	11100015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	34	480	0	ENST00000344626.4:c.1141C>T	p.Arg381Ter	p.R381*	ENST00000344626	NM_003072.3	381	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214389	36214389	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	47	466	1	ENST00000222270.7:c.3043C>T	p.Arg1015Ter	p.R1015*	ENST00000222270	NM_014727.1	1015	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221481	36221481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	57	659	2	ENST00000222270.7:c.5240C>T	p.Ser1747Leu	p.S1747L	ENST00000222270	NM_014727.1	1747	tCg/tTg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383185	42383185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	17	492	0	ENST00000221972.3:c.205G>A	p.Val69Ile	p.V69I	ENST00000221972	NM_021601.3	69	Gtc/Atc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912134	50912134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	35	683	0	ENST00000440232.2:c.1868G>A	p.Arg623Gln	p.R623Q	ENST00000440232	NM_002691.3	623	cGg/cAg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965839	25965839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	16	531	0	ENST00000435504.4:c.3367C>T	p.His1123Tyr	p.H1123Y	ENST00000435504		1123	Cac/Tac																																																																														
MSH2	4436	MSKCC	GRCh37	2	47657046	47657050	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTA	ACCTA	-			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	57	276	0	ENST00000233146.2:c.1243_1247del	p.Pro415CysfsTer9	p.P415Cfs*9	ENST00000233146	NM_000251.2	414	ctACCTAat/ctat																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794474	242794474	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	48	616	1	ENST00000334409.5:c.468del	p.Ser157AlafsTer28	p.S157Afs*28	ENST00000334409	NM_005018.2	156	ccC/cc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386387	31386387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	60	449	1	ENST00000328111.2:c.1612C>T	p.Arg538Cys	p.R538C	ENST00000328111	NM_006892.3	538	Cgc/Tgc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	12	466	0	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	8	378	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55598137	55598137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	21	376	0	ENST00000288135.5:c.2334G>T	p.Lys778Asn	p.K778N	ENST00000288135	NM_000222.2	778	aaG/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521120	187521120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	46	413	1	ENST00000441802.2:c.12035C>T	p.Thr4012Met	p.T4012M	ENST00000441802	NM_005245.3	4012	aCg/aTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79961007	79961007	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	26	433	0	ENST00000265081.6:c.408del	p.Lys136AsnfsTer2	p.K136Nfs*2	ENST00000265081	NM_002439.4	135	gAa/ga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672747	86672747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	20	312	0	ENST00000274376.6:c.2234G>A	p.Cys745Tyr	p.C745Y	ENST00000274376	NM_002890.2	745	tGt/tAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052980	180052980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	60	703	1	ENST00000261937.6:c.1310G>A	p.Arg437His	p.R437H	ENST00000261937	NM_182925.4	437	cGt/cAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180058748	180058748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	32	589	1	ENST00000261937.6:c.89C>T	p.Pro30Leu	p.P30L	ENST00000261937	NM_182925.4	30	cCg/cTg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372287	55372288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	18	230	0	ENST00000297316.4:c.983dup	p.Gly331ArgfsTer34	p.G331Rfs*34	ENST00000297316	NM_022454.3	326	cac/caCc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222978	53222978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	33	536	0	ENST00000375401.3:c.4094C>A	p.Pro1365Gln	p.P1365Q	ENST00000375401	NM_004187.3	1365	cCg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577061	7577074	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTCTTGCGGAGA	CTTTCTTGCGGAGA	-			P-0033690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	113	706	0	ENST00000269305.4:c.864_877del	p.Asn288LysfsTer13	p.N288Kfs*13	ENST00000269305	NM_001126112.2	288	aaTCTCCGCAAGAAAGgg/aagg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246370	41246370	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0033690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	182	614	0	ENST00000357654.3:c.1178T>G	p.Leu393Ter	p.L393*	ENST00000357654	NM_007294.3	393	tTa/tGa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30733037	30733038	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCTGCTC			P-0033690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	58	303	0	ENST00000359013.4:c.1726_1733dup	p.Glu579AlafsTer13	p.E579Afs*13	ENST00000359013	NM_001024847.2	575	-/AGCTGCTC																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39074225	39074225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	34	175	0	ENST00000357387.3:c.85G>C	p.Asp29His	p.D29H	ENST00000357387	NM_152756.3	29	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7576900	7576901	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0033720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	93	703	0	ENST00000269305.4:c.945_946del	p.Gln317AlafsTer19	p.Q317Afs*19	ENST00000269305	NM_001126112.2	315	tcTCcc/tccc																																																																														
APC	324	MSKCC	GRCh37	5	112173837	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0033720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	33	429	0	ENST00000257430.4:c.2547_2548del	p.Asp849GlufsTer62	p.D849Efs*62	ENST00000257430	NM_000038.5	849	gAT/g																																																																														
BLM	641	MSKCC	GRCh37	15	91293134	91293135	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0033720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	28	511	0	ENST00000355112.3:c.638_639del	p.Ser213Ter	p.S213*	ENST00000355112	NM_000057.2	212	tcCTct/tcct																																																																														
AKT3	10000	MSKCC	GRCh37	1	243809263	243809263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	34	534	0	ENST00000263826.5:c.361C>T	p.Pro121Ser	p.P121S	ENST00000263826	NM_005465.4	121	Cca/Tca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624291	89624291	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	165	460	0	ENST00000371953.3:c.65A>G	p.Asp22Gly	p.D22G	ENST00000371953	NM_000314.4	22	gAc/gGc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103506687	103506687	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	90	251	2	ENST00000355739.4:c.430T>A	p.Tyr144Asn	p.Y144N	ENST00000355739	NM_000123.3	144	Tat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241700	55241700	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	232	584	0	ENST00000275493.2:c.2148A>C	p.Lys716Asn	p.K716N	ENST00000275493	NM_005228.3	716	aaA/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0033726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	289	664	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631937	90631937	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	317	742	0	ENST00000330062.3:c.416T>C	p.Ile139Thr	p.I139T	ENST00000330062	NM_002168.2	139	aTc/aCc																																																																														
ETV6	2120	MSKCC	GRCh37	12	11803087	11803249	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCATTAAGGTAAAAATCTTCTCCCCTCCTTCTACGTGGTGGAAACCCTGAGCTGCACCGGCCAGGGCAGTCGTGCTGGGCTCCTCAGAGCAGGCTGTTGCAGTTGCTCTGTTCGCAGGAAATTATTTGGGGCGAGAGGGAAAGAGATGCAGCTCGCGGTGGCT	GCATTAAGGTAAAAATCTTCTCCCCTCCTTCTACGTGGTGGAAACCCTGAGCTGCACCGGCCAGGGCAGTCGTGCTGGGCTCCTCAGAGCAGGCTGTTGCAGTTGCTCTGTTCGCAGGAAATTATTTGGGGCGAGAGGGAAAGAGATGCAGCTCGCGGTGGCT	-			P-0033726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	135	358	0	ENST00000396373.4:c.28_33+157del		p.X10_splice	ENST00000396373	NM_001987.4	10																																																																															
AXIN1	8312	MSKCC	GRCh37	16	354389	354389	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	339	747	0	ENST00000262320.3:c.1169A>T	p.Glu390Val	p.E390V	ENST00000262320	NM_003502.3	390	gAg/gTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55961117	55961117	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	225	593	0	ENST00000263923.4:c.2823A>T	p.Lys941Asn	p.K941N	ENST00000263923	NM_002253.2	941	aaA/aaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105793	27105793	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	14	384	0	ENST00000324856.7:c.5404G>T	p.Glu1802Ter	p.E1802*	ENST00000324856	NM_006015.4	1802	Gag/Tag																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437616	110437616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	44	529	0	ENST00000375856.3:c.785C>G	p.Ser262Trp	p.S262W	ENST00000375856	NM_003749.2	262	tCg/tGg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62292679	62292679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	25	424	1	ENST00000508582.2:c.131C>T	p.Thr44Met	p.T44M	ENST00000508582		44	aCg/aTg																																																																														
PGR	5241	MSKCC	GRCh37	11	100912793	100912793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	28	396	0	ENST00000325455.5:c.2529G>C	p.Glu843Asp	p.E843D	ENST00000325455	NM_001202474.3	843	gaG/gaC																																																																														
KDM5A	5927	MSKCC	GRCh37	12	464403	464403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	36	438	0	ENST00000399788.2:c.791G>A	p.Arg264Gln	p.R264Q	ENST00000399788	NM_001042603.1	264	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444243	49444243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	55	657	0	ENST00000301067.7:c.3128C>G	p.Ser1043Cys	p.S1043C	ENST00000301067	NM_003482.3	1043	tCt/tGt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121437316	121437316	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	51	633	0	ENST00000257555.6:c.1654G>C	p.Glu552Gln	p.E552Q	ENST00000257555		552	Gag/Cag																																																																														
CDH1	999	MSKCC	GRCh37	16	68842631	68842631	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	28	497	0	ENST00000261769.5:c.567C>G	p.Phe189Leu	p.F189L	ENST00000261769	NM_004360.3	189	ttC/ttG																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369246	40369246	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	37	430	0	ENST00000293328.3:c.1312G>C	p.Glu438Gln	p.E438Q	ENST00000293328	NM_012448.3	438	Gaa/Caa																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370335	40370335	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	19	618	0	ENST00000293328.3:c.1003G>C	p.Glu335Gln	p.E335Q	ENST00000293328	NM_012448.3	335	Gag/Cag																																																																														
CARM1	10498	MSKCC	GRCh37	19	11022869	11022869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	42	716	0	ENST00000327064.4:c.568G>C	p.Asp190His	p.D190H	ENST00000327064	NM_199141.1	190	Gat/Cat																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228990	36228990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	56	597	0	ENST00000222270.7:c.7770C>G	p.Phe2590Leu	p.F2590L	ENST00000222270	NM_014727.1	2590	ttC/ttG																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38146169	38146169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	43	617	0	ENST00000317025.8:c.3337G>C	p.Glu1113Gln	p.E1113Q	ENST00000317025	NM_023034.1	1113	Gag/Cag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413021	63413021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	40	704	0	ENST00000330258.3:c.146C>T	p.Pro49Leu	p.P49L	ENST00000330258	NM_152424.3	49	cCa/cTa																																																																														
ATRX	546	MSKCC	GRCh37	X	76918999	76918999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	23	412	0	ENST00000373344.5:c.3992C>T	p.Ser1331Phe	p.S1331F	ENST00000373344	NM_000489.3	1331	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	71	694	3	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	21	643	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0033741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	719	657	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																														
NF1	4763	MSKCC	GRCh37	17	29652872	29652873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	91	281	0	ENST00000358273.4:c.4871dup	p.Tyr1625IlefsTer16	p.Y1625Ifs*16	ENST00000358273	NM_001042492.2	1624	ata/aTta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	30	247	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	18	508	0	ENST00000371953.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000371953	NM_000314.4	130	cGa/cTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952076	178952076	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	52	351	0	ENST00000263967.3:c.3131A>G	p.Asn1044Ser	p.N1044S	ENST00000263967	NM_006218.2	1044	aAt/aGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106319	27106346	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCCAAGCGCTGCGTCTGTGTGTCCAA	TTGCCAAGCGCTGCGTCTGTGTGTCCAA	-			P-0033750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	107	596	0	ENST00000324856.7:c.5931_5958del	p.Ala1978ProfsTer28	p.A1978Pfs*28	ENST00000324856	NM_006015.4	1977	cTTGCCAAGCGCTGCGTCTGTGTGTCCAAt/ct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488720	212488720	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033750-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	119	513	0	ENST00000342788.4:c.2129T>A	p.Leu710His	p.L710H	ENST00000342788	NM_005235.2	710	cTt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	188	465	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0033760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	150	518	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	43	294	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0033760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	139	410	1	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
ALK	238	MSKCC	GRCh37	2	29451749	29451749	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0033760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	53	462	0	ENST00000389048.3:c.2815+1G>T		p.X939_splice	ENST00000389048	NM_004304.4	939																																																																															
ROS1	6098	MSKCC	GRCh37	6	117662615	117662615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	48	430	1	ENST00000368508.3:c.4850G>T	p.Arg1617Met	p.R1617M	ENST00000368508	NM_002944.2	1617	aGg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	202	517	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	311	2	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0033768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	44	399	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81819651	81819651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	76	491	0	ENST00000359376.3:c.57G>T	p.Lys19Asn	p.K19N	ENST00000359376	NM_002661.3	19	aaG/aaT																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781440	135781440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	73	406	0	ENST00000298552.3:c.1525C>T	p.Arg509Ter	p.R509*	ENST00000298552	NM_001162426.1	509	Cga/Tga																																																																														
MET	4233	MSKCC	GRCh37	7	116411880	116411883	+	intron_variant	Intron	DEL	TCTT	TCTT	-			P-0033769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	133	858	0	ENST00000397752.3:c.2888-16_2888-13delTTCT		p.*963*	ENST00000397752	NM_000245.2	963																																																																															
FLT3	2322	MSKCC	GRCh37	13	28636193	28636193	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	55	368	0	ENST00000241453.7:c.179del	p.Pro60ArgfsTer8	p.P60Rfs*8	ENST00000241453	NM_004119.2	60	cCg/cg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885972	59885972	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	107	585	0	ENST00000259008.2:c.774G>C	p.Gln258His	p.Q258H	ENST00000259008	NM_032043.2	258	caG/caC																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267500	198267500	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	72	378	4	ENST00000335508.6:c.1857C>G	p.Asn619Lys	p.N619K	ENST00000335508	NM_012433.2	619	aaC/aaG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578488	7578494	+	frameshift_variant	Frame_Shift_Del	DEL	CAACCCA	CAACCCA	-			P-0033798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	484	829	0	ENST00000269305.4:c.436_442del	p.Trp146IlefsTer22	p.W146Ifs*22	ENST00000269305	NM_001126112.2	146	TGGGTTGat/at																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15952157	15952157	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0033798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	21	530	0	ENST00000268712.3:c.6536+2T>G		p.X2179_splice	ENST00000268712	NM_006311.3	2179																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	42	508	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CIC	23152	MSKCC	GRCh37	19	42796756	42796756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	91	680	0	ENST00000575354.2:c.3214G>A	p.Val1072Met	p.V1072M	ENST00000575354	NM_015125.3	1072	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	53	221	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	107	490	1	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																														
ATM	472	MSKCC	GRCh37	11	108115594	108115594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	63	437	1	ENST00000278616.4:c.742C>T	p.Arg248Ter	p.R248*	ENST00000278616	NM_000051.3	248	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	233	666	1	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	24	186	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693009	89693010	+	splice_donor_variant	Splice_Site	INS	-	-	TTGT			P-0033803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	10	229	0	ENST00000371953.3:c.492+2_492+3insTGTT		p.X164_splice	ENST00000371953	NM_000314.4	164																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	65	448	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0033809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	69	788	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034422	47034438	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCCGGGGCTTCGCCT	GAGCCGGGGCTTCGCCT	-			P-0033809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	108	360	0	ENST00000329236.7:c.276_292del	p.Gln92HisfsTer5	p.Q92Hfs*5	ENST00000329236	NM_001204466.1	92	caGAGCCGGGGCTTCGCCTtc/catc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	178	614	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	89	228	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	221	576	0	ENST00000269305.4:c.518T>C	p.Val173Ala	p.V173A	ENST00000269305	NM_001126112.2	173	gTg/gCg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120181	70120182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	181	378	0	ENST00000245479.2:c.1185_1186dup	p.His396ArgfsTer8	p.H396Rfs*8	ENST00000245479	NM_000346.3	395	acg/aCGcg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735458	40735458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	397	581	0	ENST00000373198.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000373198	NM_133170.3	1139	Cgg/Tgg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	212	611	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914723	39914723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	162	413	1	ENST00000378444.4:c.4639C>T	p.Arg1547Ter	p.R1547*	ENST00000378444	NM_001123385.1	1547	Cga/Tga																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197353	26197353	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	52	318	0	ENST00000356476.2:c.126C>G	p.Tyr42Ter	p.Y42*	ENST00000356476		42	taC/taG																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118377	17118380	+	frameshift_variant	Frame_Shift_Del	DEL	TCAA	TCAA	-			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	185	625	0	ENST00000285071.4:c.1457_1460del	p.Ile486LysfsTer4	p.I486Kfs*4	ENST00000285071	NM_144997.5	486	aTTGAa/aa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41420107	41420107	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	140	221	1	ENST00000373198.4:c.215-1G>A		p.X72_splice	ENST00000373198	NM_133170.3	72																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143045766	143045766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	45	349	0	ENST00000262992.4:c.1868G>C	p.Arg623Thr	p.R623T	ENST00000262992	NM_001101669.1	623	aGa/aCa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509870	106509870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	181	502	0	ENST00000359195.3:c.1864T>G	p.Leu622Val	p.L622V	ENST00000359195	NM_002649.2	622	Ttg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	244	457	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	244	540	2	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101336	27101336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	199	607	0	ENST00000324856.7:c.4618A>G	p.Asn1540Asp	p.N1540D	ENST00000324856	NM_006015.4	1540	Aac/Gac																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111437	8111437	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	36	358	0	ENST00000346208.3:c.923C>T	p.Ser308Phe	p.S308F	ENST00000346208		308	tCt/tTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1219413	1219413	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0033813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	220	509	0	ENST00000326873.7:c.464+1G>A		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
SF3B1	23451	MSKCC	GRCh37	2	198263249	198263249	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	148	527	0	ENST00000335508.6:c.3070T>G	p.Leu1024Val	p.L1024V	ENST00000335508	NM_012433.2	1024	Tta/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	246	518	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	89	278	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																														
DIS3	22894	MSKCC	GRCh37	13	73342975	73342975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	248	431	1	ENST00000377767.4:c.1831C>T	p.Arg611Cys	p.R611C	ENST00000377767	NM_014953.3	611	Cgt/Tgt																																																																														
SUFU	51684	MSKCC	GRCh37	10	104353811	104353812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0033814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	183	411	0	ENST00000369902.3:c.749_750dup	p.Leu251ThrfsTer17	p.L251Tfs*17	ENST00000369902	NM_016169.3	249	cca/cCAca																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120165	70120165	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	179	266	0	ENST00000245479.2:c.1169del	p.Gly390AlafsTer13	p.G390Afs*13	ENST00000245479	NM_000346.3	389	ccG/cc																																																																														
APC	324	MSKCC	GRCh37	5	112173728	112173743	+	frameshift_variant	Frame_Shift_Del	DEL	AATTTTAATACTGGCA	AATTTTAATACTGGCA	-			P-0033814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	55	317	0	ENST00000257430.4:c.2438_2453del	p.Asn813ThrfsTer2	p.N813Tfs*2	ENST00000257430	NM_000038.5	813	AATTTTAATACTGGCAac/ac																																																																														
JAK2	3717	MSKCC	GRCh37	9	5064922	5064922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	54	370	0	ENST00000381652.3:c.1096G>A	p.Val366Met	p.V366M	ENST00000381652	NM_004972.3	366	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	79	521	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	65	366	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	144	670	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																														
ATR	545	MSKCC	GRCh37	3	142243013	142243013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	85	441	0	ENST00000350721.4:c.3974G>A	p.Ser1325Asn	p.S1325N	ENST00000350721	NM_001184.3	1325	aGt/aAt																																																																														
KDR	3791	MSKCC	GRCh37	4	55970962	55970962	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	103	572	0	ENST00000263923.4:c.1835T>G	p.Leu612Trp	p.L612W	ENST00000263923	NM_002253.2	612	tTg/tGg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169929	32169929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	156	735	0	ENST00000375023.3:c.3679G>T	p.Gly1227Trp	p.G1227W	ENST00000375023	NM_004557.3	1227	Ggg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76952063	76952063	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0033816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	46	440	0	ENST00000373344.5:c.370+2T>A		p.X124_splice	ENST00000373344	NM_000489.3	124																																																																															
MGA	23269	MSKCC	GRCh37	15	42041788	42041788	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	148	325	0	ENST00000219905.7:c.5983C>T	p.Gln1995Ter	p.Q1995*	ENST00000219905	NM_001164273.1	1995	Cag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923411	9923411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	212	554	0	ENST00000330684.3:c.1876A>G	p.Thr626Ala	p.T626A	ENST00000330684	NM_001134407.1	626	Acc/Gcc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132430	11132430	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	237	661	0	ENST00000344626.4:c.2646A>C	p.Glu882Asp	p.E882D	ENST00000344626	NM_003072.3	882	gaA/gaC																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021446	31021446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	190	358	1	ENST00000375687.4:c.1445C>T	p.Pro482Leu	p.P482L	ENST00000375687	NM_015338.5	482	cCa/cTa																																																																														
HGF	3082	MSKCC	GRCh37	7	81386604	81386604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	128	466	0	ENST00000222390.5:c.383G>A	p.Cys128Tyr	p.C128Y	ENST00000222390	NM_000601.4	128	tGc/tAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	88	386	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ATR	545	MSKCC	GRCh37	3	142257354	142257354	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs201150434		P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	46	414	0	ENST00000350721.4:c.3695C>A	p.Ala1232Asp	p.A1232D	ENST00000350721	NM_001184.3	1232	gCt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	15	290	1	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	41	192	0	ENST00000257430.4:c.834+1G>A		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																															
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	27	381	0	ENST00000558401.1:c.3G>A	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	46	360	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	47	244	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	95	399	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139404348	139404348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	36	640	0	ENST00000277541.6:c.2806G>A	p.Gly936Ser	p.G936S	ENST00000277541	NM_017617.3	936	Ggc/Agc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	101	437	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																														
RHOA	387	MSKCC	GRCh37	3	49397700	49397700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	72	444	2	ENST00000418115.1:c.524C>T	p.Thr175Met	p.T175M	ENST00000418115	NM_001664.2	175	aCg/aTg																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111884834	111884834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181079548		P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	12	322	0	ENST00000341259.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000341259	NM_005475.2	308	cGa/cAa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023957	31023957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139435094		P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	49	505	1	ENST00000375687.4:c.3442C>T	p.Arg1148Cys	p.R1148C	ENST00000375687	NM_015338.5	1148	Cgc/Tgc																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	137	339	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029511	16029511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	34	369	0	ENST00000268712.3:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000268712	NM_006311.3	507	Cga/Tga																																																																														
AR	367	MSKCC	GRCh37	X	66943588	66943588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	15	457	0	ENST00000374690.3:c.2668G>A	p.Val890Met	p.V890M	ENST00000374690	NM_000044.3	890	Gtg/Atg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	19	528	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1293605	1293605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	16	650	1	ENST00000310581.5:c.1396C>T	p.Arg466Trp	p.R466W	ENST00000310581	NM_198253.2	466	Cgg/Tgg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523271	9523271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	67	522	1	ENST00000353224.5:c.1966C>T	p.Arg656Trp	p.R656W	ENST00000353224	NM_177990.2	656	Cgg/Tgg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740749	58740749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	19	426	1	ENST00000305921.3:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000305921	NM_003620.3	552	Cga/Tga																																																																														
UPF1	5976	MSKCC	GRCh37	19	18966754	18966754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	96	603	3	ENST00000262803.5:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000262803	NM_002911.3	522	cCg/cTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807319	3807319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	47	333	0	ENST00000262367.5:c.3668G>A	p.Arg1223His	p.R1223H	ENST00000262367	NM_004380.2	1223	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436299	110436299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	17	169	1	ENST00000375856.3:c.2102C>T	p.Ala701Val	p.A701V	ENST00000375856	NM_003749.2	701	gCc/gTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41513676	41513676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	19	496	0	ENST00000263253.7:c.580G>A	p.Gly194Ser	p.G194S	ENST00000263253	NM_001429.3	194	Ggt/Agt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981111	201981111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	125	491	0	ENST00000359651.3:c.190C>T	p.Pro64Ser	p.P64S	ENST00000359651		64	Ccc/Tcc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114799795	114799795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	83	360	0	ENST00000543371.1:c.462G>T	p.Met154Ile	p.M154I	ENST00000543371	NM_001198531.1	154	atG/atT																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125513702	125513702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	36	344	0	ENST00000428830.2:c.830G>A	p.Arg277Gln	p.R277Q	ENST00000428830	NM_001114121.2	277	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435248	49435248	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	23	642	0	ENST00000301067.7:c.6305T>C	p.Leu2102Pro	p.L2102P	ENST00000301067	NM_003482.3	2102	cTa/cCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440181	49440181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	76	494	0	ENST00000301067.7:c.4445C>T	p.Ala1482Val	p.A1482V	ENST00000301067	NM_003482.3	1482	gCt/gTt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527897	103527897	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	16	238	0	ENST00000355739.4:c.3205A>G	p.Ser1069Gly	p.S1069G	ENST00000355739	NM_000123.3	1069	Agc/Ggc																																																																														
MGA	23269	MSKCC	GRCh37	15	42058949	42058949	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	56	344	0	ENST00000219905.7:c.8669T>C	p.Val2890Ala	p.V2890A	ENST00000219905	NM_001164273.1	2890	gTt/gCt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43705316	43705316	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	22	587	1	ENST00000382044.4:c.5305+1G>A		p.X1769_splice	ENST00000382044	NM_001141980.1	1769																																																																															
ZFHX3	463	MSKCC	GRCh37	16	72828264	72828264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	29	498	0	ENST00000268489.5:c.8317C>A	p.Leu2773Ile	p.L2773I	ENST00000268489	NM_006885.3	2773	Cta/Ata																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7980057	7980057	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	67	466	0	ENST00000319144.4:c.1280T>A	p.Leu427His	p.L427H	ENST00000319144	NM_001139.2	427	cTc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604784	48604784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	48	322	0	ENST00000342988.3:c.1606C>A	p.Leu536Ile	p.L536I	ENST00000342988	NM_005359.5	536	Cta/Ata																																																																														
MSH3	4437	MSKCC	GRCh37	5	80037342	80037342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	26	243	0	ENST00000265081.6:c.1628G>T	p.Arg543Met	p.R543M	ENST00000265081	NM_002439.4	543	aGg/aTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045896	180045896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	59	373	0	ENST00000261937.6:c.2875C>T	p.Arg959Cys	p.R959C	ENST00000261937	NM_182925.4	959	Cgc/Tgc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166438	32166438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	24	531	0	ENST00000375023.3:c.4605G>T	p.Glu1535Asp	p.E1535D	ENST00000375023	NM_004557.3	1535	gaG/gaT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964370	93964370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	55	369	0	ENST00000369303.4:c.2527C>A	p.Gln843Lys	p.Q843K	ENST00000369303	NM_004440.3	843	Caa/Aaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644891	67644891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	22	367	0	ENST00000264010.4:c.156G>C	p.Gln52His	p.Q52H	ENST00000264010	NM_006565.3	52	caG/caC																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662326	227662326	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	16	445	0	ENST00000305123.5:c.1129A>G	p.Met377Val	p.M377V	ENST00000305123	NM_005544.2	377	Atg/Gtg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664567	138664567	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	19	90	0	ENST00000330315.3:c.998del	p.Pro333ArgfsTer23	p.P333Rfs*23	ENST00000330315	NM_023067.3	333	cCg/cg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947178	178947178	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	21	259	0	ENST00000263967.3:c.2614T>C	p.Phe872Leu	p.F872L	ENST00000263967	NM_006218.2	872	Ttc/Ctc																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26046003	26046003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	26	272	0	ENST00000540144.1:c.365C>T	p.Pro122Leu	p.P122L	ENST00000540144	NM_003531.2	122	cCc/cTc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761014	59761017	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	65	267	0	ENST00000259008.2:c.3390_3393delCTAT	p.Tyr1131LeufsTer18	p.Y1131Lfs*18	ENST00000259008	NM_032043.2	1130	atCTAT/at																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	187	397	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720857	89720857	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	152	165	0	ENST00000371953.3:c.1008C>G	p.Tyr336Ter	p.Y336*	ENST00000371953	NM_000314.4	336	taC/taG																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279674	123279674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	21	305	0	ENST00000358487.5:c.758C>G	p.Pro253Arg	p.P253R	ENST00000358487	NM_000141.4	253	cCt/cGt																																																																														
TET1	80312	MSKCC	GRCh37	10	70404534	70404534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	149	350	0	ENST00000373644.4:c.2048A>G	p.Gln683Arg	p.Q683R	ENST00000373644	NM_030625.2	683	cAa/cGa																																																																														
CDH1	999	MSKCC	GRCh37	16	68857388	68857388	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	176	465	0	ENST00000261769.5:c.2023A>T	p.Lys675Ter	p.K675*	ENST00000261769	NM_004360.3	675	Aaa/Taa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155236	55155236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	12	482	0	ENST00000257290.5:c.2835C>A	p.His945Gln	p.H945Q	ENST00000257290	NM_006206.4	945	caC/caA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004907	16004907	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	11	649	1	ENST00000268712.3:c.2347del	p.Gln783ArgfsTer2	p.Q783Rfs*2	ENST00000268712	NM_006311.3	783	Cag/ag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639760	3639760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1207	100	759	1	ENST00000294008.3:c.3879G>T	p.Arg1293Ser	p.R1293S	ENST00000294008	NM_032444.2	1293	agG/agT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	220	632	0	ENST00000269305.4:c.548C>A	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tAa																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715672	30715672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	124	333	0	ENST00000359013.4:c.1405C>A	p.Gln469Lys	p.Q469K	ENST00000359013	NM_001024847.2	469	Cag/Aag																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384038	84384038	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	198	560	0	ENST00000321945.7:c.814A>G	p.Lys272Glu	p.K272E	ENST00000321945	NM_139076.2	272	Aaa/Gaa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040620	47040620	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033929-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			329	57	488	5	ENST00000329236.7:c.1021C>T	p.Gln341Ter	p.Q341*	ENST00000329236	NM_001204466.1	341	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0033929-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	23	666	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390649	139390650	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0033929-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			724	61	825	9	ENST00000277541.6:c.7541_7542delCT	p.Pro2514ArgfsTer4	p.P2514Rfs*4	ENST00000277541	NM_017617.3	2514	cCT/c																																																																														
SMO	6608	MSKCC	GRCh37	7	128829066	128829066	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs41304185		P-0033929-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			26	17	17	1	ENST00000249373.3:c.74A>G	p.Asp25Gly	p.D25G	ENST00000249373	NM_005631.4	25	gAc/gGc																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944872	31944872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033929-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	54	546	2	ENST00000340398.3:c.229G>T	p.Asp77Tyr	p.D77Y	ENST00000340398	NM_001013699.2	77	Gat/Tat																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967836	93967836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033929-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			115	34	611	0	ENST00000369303.4:c.2091G>T	p.Leu697Phe	p.L697F	ENST00000369303	NM_004440.3	697	ttG/ttT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399171	139399187	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTGCCACCAGGGAGC	CGCTGCCACCAGGGAGC	-			P-0033929-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			548	58	659	0	ENST00000277541.6:c.4956_4972del	p.Leu1653GlyfsTer23	p.L1653Gfs*23	ENST00000277541	NM_017617.3	1652	ctGCTCCCTGGTGGCAGCGag/ctag																																																																														
FANCC	2176	MSKCC	GRCh37	9	97933362	97933362	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0033934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	38	364	0	ENST00000289081.3:c.520C>T	p.Arg174Ter	p.R174*	ENST00000289081	NM_000136.2	174	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237740	16237740	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	106	505	0	ENST00000375759.3:c.1187C>A	p.Ser396Ter	p.S396*	ENST00000375759	NM_015001.2	396	tCa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112173517	112173518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	21	364	0	ENST00000257430.4:c.2227dup	p.Met743AsnfsTer13	p.M743Nfs*13	ENST00000257430	NM_000038.5	742	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	136	599	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	140	744	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573586	48573586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	20	369	0	ENST00000342988.3:c.170T>C	p.Leu57Ser	p.L57S	ENST00000342988	NM_005359.5	57	tTa/tCa																																																																														
PGR	5241	MSKCC	GRCh37	11	100999062	100999062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	22	631	0	ENST00000325455.5:c.740C>T	p.Ala247Val	p.A247V	ENST00000325455	NM_001202474.3	247	gCg/gTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21565492	21565492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	58	799	1	ENST00000382592.4:c.394G>T	p.Ala132Ser	p.A132S	ENST00000382592	NM_014572.2	132	Gcc/Tcc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89851354	89851354	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	95	579	2	ENST00000389301.3:c.1378C>T	p.Arg460Ter	p.R460*	ENST00000389301	NM_000135.2	460	Cga/Tga																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14626792	14626793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	55	664	0	ENST00000254322.2:c.981_982dup	p.Gln328ProfsTer79	p.Q328Pfs*79	ENST00000254322	NM_006145.1	328	cag/cCCag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039413	47039413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	53	348	0	ENST00000329236.7:c.805G>C	p.Ala269Pro	p.A269P	ENST00000329236	NM_001204466.1	269	Gcc/Ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	123	657	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	152	590	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577578	7577578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	323	613	0	ENST00000269305.4:c.703A>G	p.Asn235Asp	p.N235D	ENST00000269305	NM_001126112.2	235	Aac/Gac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922097	39922097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	170	409	1	ENST00000378444.4:c.4075G>A	p.Gly1359Arg	p.G1359R	ENST00000378444	NM_001123385.1	1359	Ggg/Agg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134884908	134884908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202034365		P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	120	572	2	ENST00000398015.3:c.1684G>A	p.Val562Ile	p.V562I	ENST00000398015	NM_004441.4	562	Gtc/Atc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45795037	45795037	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	107	553	0	ENST00000372115.3:c.1549A>G	p.Asn517Asp	p.N517D	ENST00000372115	NM_001048171.1	517	Aat/Gat																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710658	114710659	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	233	385	0	ENST00000543371.1:c.143_144del	p.Leu48ArgfsTer3	p.L48Rfs*3	ENST00000543371	NM_001198531.1	48	cTA/c																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40375407	40375407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	267	528	0	ENST00000293328.3:c.543G>T	p.Arg181Ser	p.R181S	ENST00000293328	NM_012448.3	181	agG/agT																																																																														
APC	324	MSKCC	GRCh37	5	112174132	112174132	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	93	427	0	ENST00000257430.4:c.2841T>A	p.Cys947Ter	p.C947*	ENST00000257430	NM_000038.5	947	tgT/tgA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819326	3819326	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	420	577	0	ENST00000262367.5:c.2909A>C	p.Asn970Thr	p.N970T	ENST00000262367	NM_004380.2	970	aAc/aCc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	483	603	0	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371634	225371634	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	232	563	0	ENST00000264414.4:c.970C>T	p.Gln324Ter	p.Q324*	ENST00000264414	NM_003590.4	324	Caa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507374	8507374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	268	368	1	ENST00000356435.5:c.1604C>T	p.Ser535Phe	p.S535F	ENST00000356435		535	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0033952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	348	317	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0033952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	348	317	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76889150	76889152	+	frameshift_variant	Frame_Shift_Del	DEL	GCT	GCT	CA			P-0033953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	158	149	1	ENST00000373344.5:c.4858_4860delinsTG	p.Ser1620Ter	p.S1620*	ENST00000373344	NM_000489.3	1620	AGC/TG																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0033954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	211	678	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0033954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	235	715	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0033954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	73	243	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0033954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	116	427	0	ENST00000307078.5:c.1214_1215delAG	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																														
SOX2	6657	MSKCC	GRCh37	3	181431018	181431018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	168	619	0	ENST00000325404.1:c.870C>A	p.Ser290Arg	p.S290R	ENST00000325404	NM_003106.3	290	agC/agA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922974	44922974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	85	258	0	ENST00000377967.4:c.1835G>T	p.Arg612Leu	p.R612L	ENST00000377967	NM_021140.2	612	cGa/cTa																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	27	465	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577098	7577098	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	336	704	1	ENST00000269305.4:c.840A>T	p.Arg280Ser	p.R280S	ENST00000269305	NM_001126112.2	280	agA/agT																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032006	26032006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	71	388	0	ENST00000244661.2:c.283G>C	p.Glu95Gln	p.E95Q	ENST00000244661	NM_003537.3	95	Gag/Cag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266862	18266865	+	frameshift_variant	Frame_Shift_Del	DEL	CCGG	CCGG	-			P-0033962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	23	221	0	ENST00000222254.8:c.175_178del	p.Gly59SerfsTer70	p.G59Sfs*70	ENST00000222254	NM_005027.3	58	cCCGGc/cc																																																																														
EP300	2033	MSKCC	GRCh37	22	41573577	41573578	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0033962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	38	687	0	ENST00000263253.7:c.5862_5863delinsTT	p.Gln1955Ter	p.Q1955*	ENST00000263253	NM_001429.3	1954	caCCag/caTTag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589556	67589558	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0033962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	44	251	0	ENST00000274335.5:c.1322_1324del	p.Asn441del	p.N441del	ENST00000274335		440	gATAat/gat																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555021	106555021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	155	455	1	ENST00000369096.4:c.2138C>T	p.Ala713Val	p.A713V	ENST00000369096	NM_001198.3	713	gCc/gTc																																																																														
SMO	6608	MSKCC	GRCh37	7	128845210	128845210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	29	559	1	ENST00000249373.3:c.704C>A	p.Ala235Glu	p.A235E	ENST00000249373	NM_005631.4	235	gCg/gAg																																																																														
ALK	238	MSKCC	GRCh37	2	29498004	29498004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	132	566	0	ENST00000389048.3:c.2002G>A	p.Glu668Lys	p.E668K	ENST00000389048	NM_004304.4	668	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453134	140453136	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	130	296	0	ENST00000288602.6:c.1799_1801del	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	600	gTGAaa/gaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692910	89692910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	77	462	0	ENST00000371953.3:c.394G>A	p.Gly132Ser	p.G132S	ENST00000371953	NM_000314.4	132	Ggt/Agt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048602	180048602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	210	692	0	ENST00000261937.6:c.1960G>A	p.Glu654Lys	p.E654K	ENST00000261937	NM_182925.4	654	Gaa/Aaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70450712	70450712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	116	476	0	ENST00000373644.4:c.5552C>T	p.Ser1851Phe	p.S1851F	ENST00000373644	NM_030625.2	1851	tCc/tTc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78866571	78866571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	214	633	0	ENST00000306801.3:c.2144C>T	p.Pro715Leu	p.P715L	ENST00000306801	NM_020761.2	715	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	98	163	0				ENST00000310581	NM_198253.2																																																																																
FLT1	2321	MSKCC	GRCh37	13	29001309	29001309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	57	265	0	ENST00000282397.4:c.1423C>T	p.His475Tyr	p.H475Y	ENST00000282397	NM_002019.4	475	Cat/Tat																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17743029	17743029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	160	447	0	ENST00000250003.3:c.937C>T	p.Pro313Ser	p.P313S	ENST00000250003	NM_002478.4	313	Ccc/Tcc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64127695	64127696	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	228	617	0	ENST00000334205.4:c.188_189delinsTT	p.Ala63Val	p.A63V	ENST00000334205	NM_003942.2	63	gCC/gTT																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18719947	18719947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	44	394	0	ENST00000266497.5:c.3844C>T	p.His1282Tyr	p.H1282Y	ENST00000266497		1282	Cat/Tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445662	49445662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	305	976	0	ENST00000301067.7:c.1804C>T	p.Pro602Ser	p.P602S	ENST00000301067	NM_003482.3	602	Cca/Tca																																																																														
POLE	5426	MSKCC	GRCh37	12	133209001	133209001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	162	557	0	ENST00000320574.5:c.6230C>T	p.Ser2077Phe	p.S2077F	ENST00000320574	NM_006231.2	2077	tCt/tTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133249337	133249338	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	215	793	1	ENST00000320574.5:c.1561_1562delinsAG	p.Glu521Arg	p.E521R	ENST00000320574	NM_006231.2	521	GAg/AGg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434769	110434769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	190	353	0	ENST00000375856.3:c.3632C>T	p.Pro1211Leu	p.P1211L	ENST00000375856	NM_003749.2	1211	cCc/cTc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453418	40453419	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	226	742	1	ENST00000345506.4:c.1115_1116delinsAT	p.Thr372Asn	p.T372N	ENST00000345506	NM_003152.3	372	aCC/aAT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221242	36221243	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	122	686	0	ENST00000222270.7:c.5077-1_5077delinsAA		p.X1693_splice	ENST00000222270	NM_014727.1	1693																																																																															
PAK7	57144	MSKCC	GRCh37	20	9561103	9561104	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	68	384	0	ENST00000353224.5:c.678_679delinsTT	p.Pro227Ser	p.P227S	ENST00000353224	NM_177990.2	226	tcCCct/tcTTct																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931860	68931860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	98	575	1	ENST00000288368.4:c.290C>T	p.Pro97Leu	p.P97L	ENST00000288368	NM_024870.2	97	cCc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	34	242	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	124	521	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864193	57864193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	69	558	1	ENST00000228682.2:c.1670G>A	p.Arg557His	p.R557H	ENST00000228682	NM_005269.2	557	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0033971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	16	162	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18968237	18968237	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	43	405	0	ENST00000262803.5:c.2077A>G	p.Ile693Val	p.I693V	ENST00000262803	NM_002911.3	693	Atc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	41	332	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	50	499	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949096	44949096	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	25	447	0	ENST00000377967.4:c.3657G>A	p.Trp1219Ter	p.W1219*	ENST00000377967	NM_021140.2	1219	tgG/tgA																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612933	228612933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	79	481	0	ENST00000366696.1:c.94G>A	p.Ala32Thr	p.A32T	ENST00000366696	NM_003493.2	32	Gcc/Acc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115752	8115752	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	135	485	0	ENST00000346208.3:c.1102del	p.Met368CysfsTer36	p.M368Cfs*36	ENST00000346208		366	cgA/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	115	599	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	161	461	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56787260	56787260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	113	758	0	ENST00000337432.4:c.746G>A	p.Arg249His	p.R249H	ENST00000337432	NM_058216.2	249	cGt/cAt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763317	59763317	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	87	864	0	ENST00000259008.2:c.2785C>G	p.Leu929Val	p.L929V	ENST00000259008	NM_032043.2	929	Cta/Gta																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326114	62326114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	92	593	0	ENST00000508582.2:c.3202C>A	p.Gln1068Lys	p.Q1068K	ENST00000508582		1068	Cag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175191	112175192	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	58	274	0	ENST00000257430.4:c.3901dup	p.Thr1301AsnfsTer14	p.T1301Nfs*14	ENST00000257430	NM_000038.5	1300	-/A																																																																														
FYN	2534	MSKCC	GRCh37	6	112025282	112025282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	91	621	0	ENST00000368678.4:c.467G>A	p.Arg156Gln	p.R156Q	ENST00000368678		156	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151868387	151868387	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	88	576	0	ENST00000262189.6:c.9415A>T	p.Ser3139Cys	p.S3139C	ENST00000262189	NM_170606.2	3139	Agt/Tgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	100	272	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	76	307	0	ENST00000371953.3:c.274G>C	p.Asp92His	p.D92H	ENST00000371953	NM_000314.4	92	Gac/Cac																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716212	52716212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	165	568	0	ENST00000322088.6:c.656C>T	p.Ser219Leu	p.S219L	ENST00000322088	NM_014225.5	219	tCg/tTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057874	27057874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			724	195	663	0	ENST00000324856.7:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000324856	NM_006015.4	528	Cag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145689	11145689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	149	562	0	ENST00000344626.4:c.4051G>A	p.Asp1351Asn	p.D1351N	ENST00000344626	NM_003072.3	1351	Gac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023156	27023172	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGGCAGCGGCGGCGG	GCCGGCAGCGGCGGCGG	-			P-0033990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			104	93	74	0	ENST00000324856.7:c.265_281del	p.Gly89ArgfsTer16	p.G89Rfs*16	ENST00000324856	NM_006015.4	88	GCCGGCAGCGGCGGCGGg/g																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720677	89720677	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			110	78	157	0	ENST00000371953.3:c.828T>A	p.Asn276Lys	p.N276K	ENST00000371953	NM_000314.4	276	aaT/aaA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828769	72828771	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0033990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	149	494	0	ENST00000268489.5:c.7810_7812del	p.Pro2604del	p.P2604del	ENST00000268489	NM_006885.3	2604	CCT/-																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085626	16085637	+	inframe_deletion	In_Frame_Del	DEL	GATGAAGAGGAA	GATGAAGAGGAA	-			P-0033990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	78	356	0	ENST00000281043.3:c.816_827del	p.Asp272_Glu275del	p.D272_E275del	ENST00000281043	NM_005378.4	268	GATGAAGAGGAA/-																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591114	67591115	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTT			P-0033990-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			180	35	242	0	ENST00000274335.5:c.1708_1710dup	p.Leu570dup	p.L570dup	ENST00000274335		570	-/CTT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	94	366	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	96	523	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55964872	55964872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	38	244	1	ENST00000263923.4:c.2365G>A	p.Val789Ile	p.V789I	ENST00000263923	NM_002253.2	789	Gtt/Att																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	18	514	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391168	89391168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	70	339	0	ENST00000336596.2:c.1234G>A	p.Val412Ile	p.V412I	ENST00000336596	NM_005233.5	412	Gtt/Att																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060789	38060792	+	frameshift_variant	Frame_Shift_Del	DEL	GAAC	GAAC	-			P-0034030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	61	642	0	ENST00000250448.2:c.1197_1200del	p.Phe400ProfsTer39	p.F400Pfs*39	ENST00000250448	NM_004496.3	399	ccGTTC/cc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061009	38061015	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGGGG	CCGGGGG	-			P-0034030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	17	110	0	ENST00000250448.2:c.974_980del	p.Ala325GlyfsTer23	p.A325Gfs*23	ENST00000250448	NM_004496.3	325	gCCCCCGGg/gg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	143	365	0	ENST00000347630.2:c.373T>A	p.Phe125Ile	p.F125I	ENST00000347630	NM_001007230.1	125	Ttt/Att																																																																														
AGO2	27161	MSKCC	GRCh37	8	141559387	141559387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	165	456	0	ENST00000220592.5:c.1414G>A	p.Glu472Lys	p.E472K	ENST00000220592	NM_012154.3	472	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0034031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	412	507	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46277807	46277807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	66	328	0	ENST00000371998.3:c.3605G>A	p.Gly1202Asp	p.G1202D	ENST00000371998		1202	gGt/gAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541045	187541045	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	118	298	0	ENST00000441802.2:c.6695del	p.Asn2232IlefsTer8	p.N2232Ifs*8	ENST00000441802	NM_005245.3	2232	aAt/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	44	423	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	84	569	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857692	9857692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1389208302		P-0034034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	38	325	0	ENST00000330684.3:c.3709G>A	p.Asp1237Asn	p.D1237N	ENST00000330684	NM_001134407.1	1237	Gat/Aat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55140786	55140786	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	94	408	0	ENST00000257290.5:c.1647G>A	p.Trp549Ter	p.W549*	ENST00000257290	NM_006206.4	549	tgG/tgA																																																																														
POLE	5426	MSKCC	GRCh37	12	133208969	133208969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	140	471	0	ENST00000320574.5:c.6262C>T	p.Pro2088Ser	p.P2088S	ENST00000320574	NM_006231.2	2088	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757438	40757438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	67	463	0	ENST00000373198.4:c.2860G>A	p.Asp954Asn	p.D954N	ENST00000373198	NM_133170.3	954	Gat/Aat																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256531	+	missense_variant	Missense_Mutation	DNP	GT	GT	TC			P-0034034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	349	533	0	ENST00000369535.4:c.180_181delinsGA	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	60	ggACaa/ggGAaa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675631	30675631	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	74	689	0	ENST00000376406.3:c.2725A>G	p.Thr909Ala	p.T909A	ENST00000376406	NM_014641.2	909	Acc/Gcc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859527	151859528	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0034034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	120	426	1	ENST00000262189.6:c.11134_11135delinsTT	p.Pro3712Phe	p.P3712F	ENST00000262189	NM_170606.2	3712	CCt/TTt																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200104	67200104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	151	477	0	ENST00000312629.5:c.491G>T	p.Gly164Val	p.G164V	ENST00000312629	NM_003952.2	164	gGc/gTc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061132	38061197	+	protein_altering_variant	In_Frame_Del	DEL	CCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	CCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	GTT			P-0034039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	133	253	2	ENST00000250448.2:c.792_857delinsAAC	p.Arg265_Gly286delinsThr	p.R265_G286delinsT	ENST00000250448	NM_004496.3	264	aaGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGc/aaAACc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3790454	3790454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	228	388	0	ENST00000262367.5:c.4079G>C	p.Arg1360Pro	p.R1360P	ENST00000262367	NM_004380.2	1360	cGa/cCa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618800	37618801	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	80	297	0	ENST00000447079.4:c.477dup	p.Asp160Ter	p.D160*	ENST00000447079	NM_015083.1	159	gat/gaTt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37673746	37673746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	77	481	0	ENST00000447079.4:c.2900C>T	p.Pro967Leu	p.P967L	ENST00000447079	NM_015083.1	967	cCc/cTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720981	176720981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	82	347	0	ENST00000439151.2:c.6612G>C	p.Glu2204Asp	p.E2204D	ENST00000439151	NM_022455.4	2204	gaG/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	56	511	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	63	641	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	15	412	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867502	45867502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	29	742	0	ENST00000391945.4:c.806C>T	p.Thr269Met	p.T269M	ENST00000391945	NM_000400.3	269	aCg/aTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434685	99434685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	40	636	1	ENST00000268035.6:c.772G>A	p.Gly258Ser	p.G258S	ENST00000268035	NM_000875.3	258	Ggt/Agt																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186503977	186503977	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	21	388	0	ENST00000323963.5:c.542T>C	p.Val181Ala	p.V181A	ENST00000323963		181	gTt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	207	504	2	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066627	94066627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	22	412	0	ENST00000369303.4:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000369303	NM_004440.3	378	Gaa/Aaa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145689	11145689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	74	477	0	ENST00000344626.4:c.4051G>A	p.Asp1351Asn	p.D1351N	ENST00000344626	NM_003072.3	1351	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578255	7578255	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	14	511	1	ENST00000269305.4:c.594A>T	p.Glu198Asp	p.E198D	ENST00000269305	NM_001126112.2	198	gaA/gaT																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783218	9783218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	23	416	0	ENST00000377346.4:c.2462G>A	p.Arg821His	p.R821H	ENST00000377346	NM_005026.3	821	cGc/cAc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176054996	176054996	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	19	448	0	ENST00000367669.3:c.1057T>A	p.Leu353Ile	p.L353I	ENST00000367669	NM_022457.5	353	Tta/Ata																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111547	8111547	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	59	401	0	ENST00000346208.3:c.1033T>C	p.Tyr345His	p.Y345H	ENST00000346208		345	Tac/Cac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244097	5244097	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	20	615	0	ENST00000357368.4:c.1385T>G	p.Val462Gly	p.V462G	ENST00000357368	NM_002850.3	462	gTc/gGc																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149245621	149245621	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0034060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	61	483	0	ENST00000360632.3:c.905+2T>C		p.X302_splice	ENST00000360632	NM_015472.4	302																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139412332	139412332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	26	533	0	ENST00000277541.6:c.1313G>T	p.Cys438Phe	p.C438F	ENST00000277541	NM_017617.3	438	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	43	593	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	44	757	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108143549	108143549	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	37	650	0	ENST00000278616.4:c.3254T>A	p.Val1085Asp	p.V1085D	ENST00000278616	NM_000051.3	1085	gTt/gAt																																																																														
ATM	472	MSKCC	GRCh37	11	108150300	108150300	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	44	564	0	ENST00000278616.4:c.3367del	p.Ala1123HisfsTer3	p.A1123Hfs*3	ENST00000278616	NM_000051.3	1123	Gca/ca																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604753	48604762	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAATTCAC	TGAAATTCAC	-			P-0034082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	49	546	0	ENST00000342988.3:c.1576_1585del	p.Glu526TyrfsTer8	p.E526Yfs*8	ENST00000342988	NM_005359.5	525	atTGAAATTCAC/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	37	653	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	62	1014	1	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	46	937	0	ENST00000269305.4:c.700T>G	p.Tyr234Asp	p.Y234D	ENST00000269305	NM_001126112.2	234	Tac/Gac																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190345	32190345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	30	1006	0	ENST00000375023.3:c.394N>T	p.Arg132Cys	p.R132C	ENST00000375023	NM_004557.3	132	Cgc/Tgc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95573982	95573982	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	30	488	0	ENST00000343455.3:c.2767A>G	p.Lys923Glu	p.K923E	ENST00000343455	NM_177438.2	923	Aaa/Gaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971078	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAG	CGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAG	-			P-0034084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	44	891	0	ENST00000304494.5:c.280_322del	p.Leu94MetfsTer38	p.L94Mfs*38	ENST00000304494	NM_000077.4	94	CTGGTGGTGCTGCACCGGGCCGGGGCGCGGCTGGACGTGCGCGat/at																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971078	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAG	CGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAG	-			P-0034084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	44	891	0	ENST00000304494.5:c.280_322del	p.Leu94MetfsTer38	p.L94Mfs*38	ENST00000304494	NM_000077.4	94	CTGGTGGTGCTGCACCGGGCCGGGGCGCGGCTGGACGTGCGCGat/at																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971036	21971078	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAG	CGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAG	-			P-0034084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	44	891	0	ENST00000304494.5:c.280_322del	p.Leu94MetfsTer38	p.L94Mfs*38	ENST00000304494	NM_000077.4	94	CTGGTGGTGCTGCACCGGGCCGGGGCGCGGCTGGACGTGCGCGat/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	79	913	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117888	70117888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	71	586	0	ENST00000245479.2:c.356C>A	p.Ala119Glu	p.A119E	ENST00000245479	NM_000346.3	119	gCg/gAg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588988	67588988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	11	344	1	ENST00000274335.5:c.1079C>T	p.Ala360Val	p.A360V	ENST00000274335		360	gCg/gTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	50	1168	1	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023327	27023327	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	23	304	0	ENST00000324856.7:c.437del	p.Pro146GlnfsTer86	p.P146Qfs*86	ENST00000324856	NM_006015.4	145	Ccc/cc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18273105	18273105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	11	771	3	ENST00000222254.8:c.1000del	p.Asp334ThrfsTer7	p.D334Tfs*7	ENST00000222254	NM_005027.3	332	tGg/tg																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	15	1072	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794422	242794422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	39	964	0	ENST00000334409.5:c.520G>A	p.Val174Met	p.V174M	ENST00000334409	NM_005018.2	174	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1278854	1278854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	26	906	5	ENST00000310581.5:c.2188G>A	p.Ala730Thr	p.A730T	ENST00000310581	NM_198253.2	730	Gcc/Acc																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881363	111881363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	27	501	1	ENST00000393256.3:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000393256	NM_006538.4	14	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922363	178922363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	24	445	0	ENST00000263967.3:c.1132T>C	p.Cys378Arg	p.C378R	ENST00000263967	NM_006218.2	378	Tgt/Cgt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231783	36231783	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	32	840	0	ENST00000300305.3:c.601del	p.Arg201GlufsTer10	p.R201Efs*10	ENST00000300305		201	Cga/ga																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266175	198266175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	17	643	2	ENST00000335508.6:c.2445delT	p.Phe815LeufsTer19	p.F815Lfs*19	ENST00000335508	NM_012433.2	815	ttT/tt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	43	1003	4	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981546	201981547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	66	1071	0	ENST00000359651.3:c.461dup	p.Asp155ArgfsTer6	p.D155Rfs*6	ENST00000359651		154	cta/cTta																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109962	115109962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	133	1129	0	ENST00000257566.3:c.1916G>A	p.Arg639His	p.R639H	ENST00000257566	NM_016569.3	639	cGc/cAc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610239	81610239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	10	570	0	ENST00000298171.2:c.1837T>C	p.Tyr613His	p.Y613H	ENST00000298171	NM_000369.2	613	Tac/Cac																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225323	2225323	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	34	868	0	ENST00000326181.6:c.1408C>T	p.Gln470Ter	p.Q470*	ENST00000326181	NM_032271.2	470	Cag/Tag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633402	3633402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	52	1199	0	ENST00000294008.3:c.4849T>C	p.Ser1617Pro	p.S1617P	ENST00000294008	NM_032444.2	1617	Tca/Cca																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650698	67650698	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	22	704	1	ENST00000264010.4:c.1003G>T	p.Gly335Ter	p.G335*	ENST00000264010	NM_006565.3	335	Gga/Tga																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216588	2216588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	31	1125	0	ENST00000398665.3:c.2232C>G	p.Asp744Glu	p.D744E	ENST00000398665	NM_032482.2	744	gaC/gaG																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4101034	4101034	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	19	609	0	ENST00000262948.5:c.688A>G	p.Thr230Ala	p.T230A	ENST00000262948	NM_030662.3	230	Acg/Gcg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56183349	56183349	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	18	421	0	ENST00000399503.3:c.4257+2T>C		p.X1419_splice	ENST00000399503	NM_005921.1	1419																																																																															
APC	324	MSKCC	GRCh37	5	112175710	112175711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTGCAGTTCAGAG			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	34	416	0	ENST00000257430.4:c.4421_4434dup	p.Val1479LeufsTer33	p.V1479Lfs*33	ENST00000257430	NM_000038.5	1473	-/GCTGCAGTTCAGAG																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020851	26020851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	43	479	0	ENST00000357647.3:c.134G>A	p.Gly45Asp	p.G45D	ENST00000357647	NM_003529.2	45	gGc/gAc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6042269	6042270	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TG	TG	-			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	21	453	0	ENST00000265849.7:c.354-3_354-2del		p.X118_splice	ENST00000265849	NM_000535.5	118																																																																															
SOX17	64321	MSKCC	GRCh37	8	55371909	55371909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	20	454	0	ENST00000297316.4:c.599G>A	p.Gly200Asp	p.G200D	ENST00000297316	NM_022454.3	200	gGc/gAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76776356	76776356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	29	421	0	ENST00000373344.5:c.7110G>T	p.Gln2370His	p.Q2370H	ENST00000373344	NM_000489.3	2370	caG/caT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306599	41306599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	64	753	0	ENST00000373198.4:c.1060G>A	p.Val354Ile	p.V354I	ENST00000373198	NM_133170.3	354	Gtt/Att																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78858829	78858829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034107-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			113	46	480	0	ENST00000306801.3:c.1864G>T	p.Ala622Ser	p.A622S	ENST00000306801	NM_020761.2	622	Gcc/Tcc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091855	29091855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034107-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			45	20	118	0	ENST00000328354.6:c.1102G>T	p.Asp368Tyr	p.D368Y	ENST00000328354	NM_007194.3	368	Gat/Tat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331646	8331646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034107-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			133	62	440	0	ENST00000356435.5:c.5470A>G	p.Ile1824Val	p.I1824V	ENST00000356435		1824	Atc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	222	846	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106197149	106197149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	32	370	0	ENST00000380013.4:c.5482C>T	p.Gln1828Ter	p.Q1828*	ENST00000380013	NM_001127208.2	1828	Cag/Tag																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076726	72076726	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	106	555	0	ENST00000357731.5:c.771G>A	p.Trp257Ter	p.W257*	ENST00000357731	NM_173808.2	257	tgG/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112128142	112128142	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0034114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	53	279	0	ENST00000257430.4:c.646-1G>T		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																															
APC	324	MSKCC	GRCh37	5	112162946	112162946	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0034114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	49	368	0	ENST00000257430.4:c.1548+2T>C		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																															
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	213	671	1	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	288	478	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	199	255	2	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	330	539	3	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653789	89653789	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0034137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	255	306	0	ENST00000371953.3:c.87T>G	p.Tyr29Ter	p.Y29*	ENST00000371953	NM_000314.4	29	taT/taG																																																																														
STK40	83931	MSKCC	GRCh37	1	36809504	36809504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	172	563	4	ENST00000373129.3:c.961G>A	p.Ala321Thr	p.A321T	ENST00000373129	NM_032017.1	321	Gcc/Acc																																																																														
FH	2271	MSKCC	GRCh37	1	241665799	241665799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	143	429	0	ENST00000366560.3:c.1180G>T	p.Val394Phe	p.V394F	ENST00000366560	NM_000143.3	394	Gtc/Ttc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	223	385	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	33	521	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	158	735	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	171	693	0	ENST00000269571.5:c.829G>C	p.Asp277His	p.D277H	ENST00000269571		277	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	27	653	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	78	355	0	ENST00000244661.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000244661	NM_003537.3	74	Gaa/Aaa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56477621	56477621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	64	645	1	ENST00000267101.3:c.169G>A	p.Glu57Lys	p.E57K	ENST00000267101	NM_001982.3	57	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584674	187584674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	29	538	0	ENST00000441802.2:c.3359C>T	p.Ser1120Leu	p.S1120L	ENST00000441802	NM_005245.3	1120	tCa/tTa																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874166	155874166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	57	638	0	ENST00000368323.3:c.365G>A	p.Arg122Gln	p.R122Q	ENST00000368323	NM_006912.5	122	cGa/cAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259830	16259830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	74	457	0	ENST00000375759.3:c.7095G>C	p.Glu2365Asp	p.E2365D	ENST00000375759	NM_015001.2	2365	gaG/gaC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877972	151877972	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	29	386	0	ENST00000262189.6:c.6973C>T	p.Gln2325Ter	p.Q2325*	ENST00000262189	NM_170606.2	2325	Cag/Tag																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599209	28599209	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	146	721	0	ENST00000253063.3:c.655G>C	p.Glu219Gln	p.E219Q	ENST00000253063	NM_031459.4	219	Gag/Cag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112445	115112445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	127	622	0	ENST00000257566.3:c.1295C>T	p.Ser432Leu	p.S432L	ENST00000257566	NM_016569.3	432	tCg/tTg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598902	28598902	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	169	759	0	ENST00000253063.3:c.462G>C	p.Glu154Asp	p.E154D	ENST00000253063	NM_031459.4	154	gaG/gaC																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120471809	120471809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	34	380	0	ENST00000256646.2:c.3682G>A	p.Asp1228Asn	p.D1228N	ENST00000256646	NM_024408.3	1228	Gac/Aac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939533	71939533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	248	769	0	ENST00000298229.2:c.388G>A	p.Asp130Asn	p.D130N	ENST00000298229	NM_001567.3	130	Gat/Aat																																																																														
PGR	5241	MSKCC	GRCh37	11	100998871	100998871	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	104	765	0	ENST00000325455.5:c.931C>G	p.Leu311Val	p.L311V	ENST00000325455	NM_001202474.3	311	Ctc/Gtc																																																																														
YAP1	10413	MSKCC	GRCh37	11	102100642	102100642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	26	406	0	ENST00000282441.5:c.1486G>A	p.Asp496Asn	p.D496N	ENST00000282441	NM_001130145.2	496	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108129772	108129772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	18	558	0	ENST00000278616.4:c.2436G>A	p.Met812Ile	p.M812I	ENST00000278616	NM_000051.3	812	atG/atA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118372386	118372386	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	19	392	0	ENST00000534358.1:c.6320-1G>C		p.X2107_splice	ENST00000534358	NM_005933.3	2107																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245258	46245258	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	30	475	0	ENST00000334344.6:c.3352C>T	p.Gln1118Ter	p.Q1118*	ENST00000334344	NM_152641.2	1118	Cag/Tag																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780586	56780586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	49	728	0	ENST00000337432.4:c.601C>G	p.Leu201Val	p.L201V	ENST00000337432	NM_058216.2	201	Ctt/Gtt																																																																														
EP300	2033	MSKCC	GRCh37	22	41521980	41521980	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	37	538	0	ENST00000263253.7:c.842C>G	p.Ser281Ter	p.S281*	ENST00000263253	NM_001429.3	281	tCa/tGa																																																																														
ATR	545	MSKCC	GRCh37	3	142224090	142224090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	42	605	0	ENST00000350721.4:c.5087G>A	p.Arg1696Lys	p.R1696K	ENST00000350721	NM_001184.3	1696	aGa/aAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55955040	55955040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	29	451	0	ENST00000263923.4:c.3505C>G	p.Gln1169Glu	p.Q1169E	ENST00000263923	NM_002253.2	1169	Cag/Gag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509799	106509799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	21	617	1	ENST00000359195.3:c.1793G>T	p.Trp598Leu	p.W598L	ENST00000359195	NM_002649.2	598	tGg/tTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879486	151879486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	22	473	0	ENST00000262189.6:c.5459C>T	p.Ser1820Phe	p.S1820F	ENST00000262189	NM_170606.2	1820	tCt/tTt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904851	101904851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	15	452	0	ENST00000374994.4:c.839C>T	p.Ser280Leu	p.S280L	ENST00000374994	NM_004612.2	280	tCa/tTa																																																																														
ABL1	25	MSKCC	GRCh37	9	133756018	133756018	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	81	461	0	ENST00000318560.5:c.1645G>C	p.Glu549Gln	p.E549Q	ENST00000318560	NM_005157.4	549	Gag/Cag																																																																														
ATRX	546	MSKCC	GRCh37	X	76889158	76889158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	11	213	0	ENST00000373344.5:c.4852G>T	p.Asp1618Tyr	p.D1618Y	ENST00000373344	NM_000489.3	1618	Gat/Tat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0034157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	176	225	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	211	286	0	ENST00000371953.3:c.395G>A	p.Gly132Asp	p.G132D	ENST00000371953	NM_000314.4	132	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0034157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			101	398	711	0	ENST00000269305.4:c.376-1G>C		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266041	41266373	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTA	CCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTA	-			P-0034157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	151	121	0	ENST00000349496.5:c.42_242-68del		p.X14_splice	ENST00000349496	NM_001904.3	14																																																																															
NF1	4763	MSKCC	GRCh37	17	29653043	29653043	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	202	260	0	ENST00000358273.4:c.5042del	p.Asn1681ThrfsTer17	p.N1681Tfs*17	ENST00000358273	NM_001042492.2	1681	Aac/ac																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395750	45395750	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			36	198	249	0	ENST00000262160.6:c.384T>A	p.Tyr128Ter	p.Y128*	ENST00000262160	NM_005901.5	128	taT/taA																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277882	41277882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	195	226	0	ENST00000349496.5:c.1846G>T	p.Gly616Trp	p.G616W	ENST00000349496	NM_001904.3	616	Ggg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	327	635	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	373	671	0	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																																																														
CDH1	999	MSKCC	GRCh37	16	68855998	68855998	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	400	627	0	ENST00000261769.5:c.1806del	p.Cys603ValfsTer10	p.C603Vfs*10	ENST00000261769	NM_004360.3	602	ttC/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	437	738	2	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0034165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	96	502	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
RB1	5925	MSKCC	GRCh37	13	48951170	48951170	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0034165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	38	428	0	ENST00000267163.4:c.1332G>T	p.Gln444His	p.Q444H	ENST00000267163	NM_000321.2	444	caG/caT																																																																														
TSC2	7249	MSKCC	GRCh37	16	2122908	2122909	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGACT			P-0034165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	248	809	0	ENST00000219476.3:c.2282_2286dup	p.His763ThrfsTer10	p.H763Tfs*10	ENST00000219476	NM_000548.3	760	act/acTGACTt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094979	11094979	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	277	870	0	ENST00000344626.4:c.152C>A	p.Ser51Ter	p.S51*	ENST00000344626	NM_003072.3	51	tCa/tAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56111422	56111422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	184	398	0	ENST00000399503.3:c.22C>G	p.Arg8Gly	p.R8G	ENST00000399503	NM_005921.1	8	Cgc/Ggc																																																																														
APC	324	MSKCC	GRCh37	5	112176986	112176986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	162	498	0	ENST00000257430.4:c.5695G>C	p.Glu1899Gln	p.E1899Q	ENST00000257430	NM_000038.5	1899	Gaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	172	634	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	28	479	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	67	356	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577518	7577519	+	inframe_insertion	In_Frame_Ins	INS	-	-	GATGGTGAG			P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	95	854	1	ENST00000269305.4:c.754_762dup	p.Leu252_Ile254dup	p.L252_I254dup	ENST00000269305	NM_001126112.2	252	-/CTCACCATC																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208381	5208381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	97	725	1	ENST00000357368.4:c.5509C>T	p.Arg1837Trp	p.R1837W	ENST00000357368	NM_002850.3	1837	Cgg/Tgg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155211	55155211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	84	663	1	ENST00000257290.5:c.2810C>T	p.Pro937Leu	p.P937L	ENST00000257290	NM_006206.4	937	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175513	112175514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0034167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	169	445	0	ENST00000257430.4:c.4222_4223insTT	p.Glu1408ValfsTer8	p.E1408Vfs*8	ENST00000257430	NM_000038.5	1408	gaa/gTTaa																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0034175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	51	470	2	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0034175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	46	465	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032288	26032288	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0034175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	30	326	0	ENST00000244661.2:c.1A>G	p.Met1?	p.M1?	ENST00000244661	NM_003537.3	1	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	92	501	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	30	513	0	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	160	621	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032481	12032481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	74	343	0	ENST00000353533.5:c.917C>T	p.Pro306Leu	p.P306L	ENST00000353533	NM_003010.3	306	cCt/cTt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678783	52678784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	97	407	0	ENST00000394830.3:c.835dupA	p.Ile279AsnfsTer8	p.I279Nfs*8	ENST00000394830	NM_018313.4	279	ata/aAta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	88	339	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	96	358	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933586	39933586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	134	605	0	ENST00000378444.4:c.1013G>A	p.Arg338Gln	p.R338Q	ENST00000378444	NM_001123385.1	338	cGg/cAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411915	63411931	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGATACATTTGGGCA	GTGGATACATTTGGGCA	-			P-0034182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	220	941	0	ENST00000330258.3:c.1236_1252del	p.Met415TyrfsTer20	p.M415Yfs*20	ENST00000330258	NM_152424.3	412	acTGCCCAAATGTATCCACgg/acgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0034183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	176	459	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27097674	27097675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	115	648	0	ENST00000324856.7:c.3264dup	p.Ala1089CysfsTer16	p.A1089Cfs*16	ENST00000324856	NM_006015.4	1088	gct/gcTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101225	27101225	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	31	623	0	ENST00000324856.7:c.4507G>C	p.Asp1503His	p.D1503H	ENST00000324856	NM_006015.4	1503	Gac/Cac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444157	49444157	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	300	764	0	ENST00000301067.7:c.3214G>T	p.Glu1072Ter	p.E1072*	ENST00000301067	NM_003482.3	1072	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444206	49444206	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	324	834	0	ENST00000301067.7:c.3165G>C	p.Leu1055Phe	p.L1055F	ENST00000301067	NM_003482.3	1055	ttG/ttC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	23	740	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	16	416	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	40	630	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	59	522	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTAT			P-0034189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	24	406	0	ENST00000257430.4:c.4462_4466dup	p.Leu1489PhefsTer20	p.L1489Ffs*20	ENST00000257430	NM_000038.5	1487	act/acTTTATt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0034194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	18	611	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	28	836	0	ENST00000269305.4:c.532C>G	p.His178Asp	p.H178D	ENST00000269305	NM_001126112.2	178	Cac/Gac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	167	429	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	226	716	0	ENST00000269305.4:c.712T>G	p.Cys238Gly	p.C238G	ENST00000269305	NM_001126112.2	238	Tgt/Ggt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41408878	41408878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	37	419	0	ENST00000373198.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000373198	NM_133170.3	183	cGg/cAg																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84391389	84391389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	195	858	0	ENST00000321945.7:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000321945	NM_139076.2	148	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9928076	9928076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	35	300	0	ENST00000330684.3:c.1663G>A	p.Ala555Thr	p.A555T	ENST00000330684	NM_001134407.1	555	Gcc/Acc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987076	36987076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	163	756	0	ENST00000354822.5:c.613G>A	p.Glu205Lys	p.E205K	ENST00000354822	NM_001079668.2	205	Gag/Aag																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246670360	246670360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	59	348	0	ENST00000388985.4:c.160C>G	p.Leu54Val	p.L54V	ENST00000388985		54	Ctc/Gtc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650683	18650683	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	43	466	0	ENST00000266497.5:c.2893+1G>A		p.X965_splice	ENST00000266497		965																																																																															
IRS1	3667	MSKCC	GRCh37	2	227661015	227661015	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201133410		P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	132	608	0	ENST00000305123.5:c.2440G>A	p.Asp814Asn	p.D814N	ENST00000305123	NM_005544.2	814	Gac/Aac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120610	94120610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	50	526	0	ENST00000369303.4:c.441C>G	p.Asp147Glu	p.D147E	ENST00000369303	NM_004440.3	147	gaC/gaG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	449	435	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	388	811	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53245378	53245378	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	236	351	1	ENST00000375401.3:c.659C>T	p.Pro220Leu	p.P220L	ENST00000375401	NM_004187.3	220	cCg/cTg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128199873	128199873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780263343		P-0034226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	139	491	0	ENST00000341105.2:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000341105	NM_032638.4	478	Gcc/Acc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10270419	10270419	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs142673915		P-0034226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	387	892	0	ENST00000340748.4:c.1147A>G	p.Asn383Asp	p.N383D	ENST00000340748		383	Aat/Gat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860214	151860214	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	100	748	0	ENST00000262189.6:c.10448del	p.Leu3483TyrfsTer28	p.L3483Yfs*28	ENST00000262189	NM_170606.2	3483	tTa/ta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	72	634	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	115	646	1	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	56	408	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	51	390	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																														
KDR	3791	MSKCC	GRCh37	4	55956221	55956221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	128	626	0	ENST00000263923.4:c.3094C>T	p.Arg1032Ter	p.R1032*	ENST00000263923	NM_002253.2	1032	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922328	178922328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	71	469	0	ENST00000263967.3:c.1097C>G	p.Pro366Arg	p.P366R	ENST00000263967	NM_006218.2	366	cCc/cGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573428	48573428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	26	213	0	ENST00000342988.3:c.12G>A	p.Met4Ile	p.M4I	ENST00000342988	NM_005359.5	4	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	415	767	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	342	740	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49439847	49439847	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0034249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	146	664	0	ENST00000301067.7:c.4693+1G>T		p.X1565_splice	ENST00000301067	NM_003482.3	1565																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49428417	49428418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	514	793	0	ENST00000301067.7:c.10387dup	p.Ser3463PhefsTer5	p.S3463Ffs*5	ENST00000301067	NM_003482.3	3463	tcg/tTcg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437531	49437531	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	445	676	0	ENST00000301067.7:c.5354G>C	p.Ser1785Thr	p.S1785T	ENST00000301067	NM_003482.3	1785	aGc/aCc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119759	70119759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	168	654	1	ENST00000245479.2:c.761G>A	p.Arg254Gln	p.R254Q	ENST00000245479	NM_000346.3	254	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244145	153244152	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCCCCC	ACTCCCCC	-			P-0034249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	460	660	0	ENST00000281708.4:c.2005_2012del	p.Gly669CysfsTer22	p.G669Cfs*22	ENST00000281708	NM_033632.3	669	GGGGGAGTt/t																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931621	39931621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	77	537	0	ENST00000378444.4:c.2978G>T	p.Arg993Leu	p.R993L	ENST00000378444	NM_001123385.1	993	cGg/cTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76937356	76937356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	141	260	0	ENST00000373344.5:c.3392G>C	p.Arg1131Thr	p.R1131T	ENST00000373344	NM_000489.3	1131	aGa/aCa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	36	563	0	ENST00000347630.2:c.305T>C	p.Phe102Ser	p.F102S	ENST00000347630	NM_001007230.1	102	tTc/tCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0034254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	531	572	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																														
RB1	5925	MSKCC	GRCh37	13	49027244	49027244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	191	409	0	ENST00000267163.4:c.1811A>G	p.Asp604Gly	p.D604G	ENST00000267163	NM_000321.2	604	gAt/gGt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	459942	459942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	268	549	0	ENST00000399788.2:c.1153G>A	p.Val385Ile	p.V385I	ENST00000399788	NM_001042603.1	385	Gtt/Att																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857349	9857349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	280	481	0	ENST00000330684.3:c.4052G>A	p.Ser1351Asn	p.S1351N	ENST00000330684	NM_001134407.1	1351	aGc/aAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29553474	29553474	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	226	647	0	ENST00000358273.4:c.2024del	p.Gly675GlufsTer13	p.G675Efs*13	ENST00000358273	NM_001042492.2	675	Gga/ga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220874	36220874	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	100	203	0	ENST00000222270.7:c.4924G>C	p.Glu1642Gln	p.E1642Q	ENST00000222270	NM_014727.1	1642	Gag/Cag																																																																														
AXL	558	MSKCC	GRCh37	19	41726649	41726649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	400	718	0	ENST00000301178.4:c.194C>A	p.Pro65His	p.P65H	ENST00000301178	NM_021913.4	65	cCc/cAc																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186503732	186503732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	286	548	0	ENST00000323963.5:c.409G>A	p.Gly137Ser	p.G137S	ENST00000323963		137	Ggt/Agt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532749	187532749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	392	599	1	ENST00000441802.2:c.9644C>T	p.Thr3215Ile	p.T3215I	ENST00000441802	NM_005245.3	3215	aCt/aTt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288801	33288801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	294	454	0	ENST00000374542.5:c.751C>T	p.Arg251Cys	p.R251C	ENST00000374542	NM_001141970.1	251	Cgt/Tgt																																																																														
AR	367	MSKCC	GRCh37	X	66931501	66931501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	335	601	0	ENST00000374690.3:c.2143C>A	p.His715Asn	p.H715N	ENST00000374690	NM_000044.3	715	Cac/Aac																																																																														
ATRX	546	MSKCC	GRCh37	X	76940080	76940080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	205	467	0	ENST00000373344.5:c.668G>T	p.Cys223Phe	p.C223F	ENST00000373344	NM_000489.3	223	tGt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	60	512	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	44	274	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103498674	103498674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	59	362	0	ENST00000355739.4:c.58G>A	p.Glu20Lys	p.E20K	ENST00000355739	NM_000123.3	20	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578264	7578265	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATA			P-0034264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	88	459	0	ENST00000269305.4:c.582_584dup	p.Ile195dup	p.I195dup	ENST00000269305	NM_001126112.2	195	atc/atTATc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372423	55372423	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	115	714	2	ENST00000297316.4:c.1113C>A	p.Cys371Ter	p.C371*	ENST00000297316	NM_022454.3	371	tgC/tgA																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	251	626	1	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156713	20156713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	165	299	0	ENST00000379607.5:c.44G>A	p.Gly15Asp	p.G15D	ENST00000379607	NM_001412.3	15	gGt/gAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431954	49431954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	287	742	0	ENST00000301067.7:c.9185A>G	p.Lys3062Arg	p.K3062R	ENST00000301067	NM_003482.3	3062	aAg/aGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	86	442	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523142	176523142	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1281	138	676	0	ENST00000292408.4:c.1906G>C	p.Gly636Arg	p.G636R	ENST00000292408	NM_213647.1	636	Ggc/Cgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577600	7577601	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0034275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	99	502	0	ENST00000269305.4:c.680_681del	p.Ser227Ter	p.S227*	ENST00000269305	NM_001126112.2	227	tCT/t																																																																														
ATM	472	MSKCC	GRCh37	11	108202170	108202170	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0034275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	52	289	0	ENST00000278616.4:c.7516-1G>C		p.X2506_splice	ENST00000278616	NM_000051.3	2506																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604732	48604739	+	frameshift_variant	Frame_Shift_Del	DEL	CAAAGAAA	CAAAGAAA	-			P-0034275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	121	391	0	ENST00000342988.3:c.1556_1563del	p.Lys519ThrfsTer5	p.K519Tfs*5	ENST00000342988	NM_005359.5	518	atCAAAGAAAca/atca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971164	21971164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	120	430	0	ENST00000304494.5:c.194T>C	p.Leu65Pro	p.L65P	ENST00000304494	NM_000077.4	65	cTc/cCc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971164	21971164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	120	430	0	ENST00000304494.5:c.194T>C	p.Leu65Pro	p.L65P	ENST00000304494	NM_000077.4	65	cTc/cCc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817729	3817729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	58	458	0	ENST00000262367.5:c.3242G>A	p.Arg1081His	p.R1081H	ENST00000262367	NM_004380.2	1081	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	171	461	0	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543850	212543850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	32	273	0	ENST00000342788.4:c.1549C>A	p.Pro517Thr	p.P517T	ENST00000342788	NM_005235.2	517	Cca/Aca																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71008428	71008428	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	107	288	0	ENST00000318789.4:c.2004del	p.Asp669MetfsTer4	p.D669Mfs*4	ENST00000318789	NM_032682.5	668	gaA/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	31	569	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	34	372	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	135	608	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	71	485	2	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112174430	112174430	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	15	307	0	ENST00000257430.4:c.3139G>T	p.Glu1047Ter	p.E1047*	ENST00000257430	NM_000038.5	1047	Gaa/Taa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120132	70120133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	77	259	0	ENST00000245479.2:c.1137_1138dupGC	p.His380ArgfsTer4	p.H380Rfs*4	ENST00000245479	NM_000346.3	378	-/GC																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214866	36214866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	194	945	1	ENST00000222270.7:c.3292G>A	p.Gly1098Arg	p.G1098R	ENST00000222270	NM_014727.1	1098	Ggg/Agg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528243	157528243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	88	636	1	ENST00000346085.5:c.5968C>T	p.Arg1990Ter	p.R1990*	ENST00000346085	NM_020732.3	1990	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	173	809	0	ENST00000269305.4:c.577C>G	p.His193Asp	p.H193D	ENST00000269305	NM_001126112.2	193	Cat/Gat																																																																														
MTOR	2475	MSKCC	GRCh37	1	11168283	11168283	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	185	886	0	ENST00000361445.4:c.7589A>G	p.Lys2530Arg	p.K2530R	ENST00000361445	NM_004958.3	2530	aAa/aGa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28592644	28592644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	23	640	0	ENST00000241453.7:c.2501G>C	p.Arg834Pro	p.R834P	ENST00000241453	NM_004119.2	834	cGa/cCa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	237	615	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	294	740	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28644632	28644632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			672	93	695	1	ENST00000241453.7:c.161C>A	p.Pro54His	p.P54H	ENST00000241453	NM_004119.2	54	cCc/cAc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748096	41748096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			70	11	83	0	ENST00000226382.2:c.673G>T	p.Gly225Trp	p.G225W	ENST00000226382	NM_003924.3	225	Ggg/Tgg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138192432	138192432	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	68	382	0	ENST00000237289.4:c.68A>G	p.Glu23Gly	p.E23G	ENST00000237289	NM_001270507.1	23	gAg/gGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	105	227	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	187	511	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	21	231	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																														
APC	324	MSKCC	GRCh37	5	112174760	112174760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	64	275	0	ENST00000257430.4:c.3469G>C	p.Glu1157Gln	p.E1157Q	ENST00000257430	NM_000038.5	1157	Gag/Cag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86679546	86679546	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	160	430	0	ENST00000274376.6:c.2707C>T	p.Arg903Ter	p.R903*	ENST00000274376	NM_002890.2	903	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46205250	46205250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	86	435	0	ENST00000334344.6:c.334G>A	p.Glu112Lys	p.E112K	ENST00000334344	NM_152641.2	112	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	282	625	0	ENST00000267101.3:c.273G>C	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atC																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822523	72822523	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	83	640	0	ENST00000268489.5:c.9652C>G	p.Pro3218Ala	p.P3218A	ENST00000268489	NM_006885.3	3218	Ccg/Gcg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831105	72831105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	180	436	1	ENST00000268489.5:c.5476G>A	p.Gly1826Arg	p.G1826R	ENST00000268489	NM_006885.3	1826	Ggg/Agg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618889	37618889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	154	446	0	ENST00000447079.4:c.565G>A	p.Glu189Lys	p.E189K	ENST00000447079	NM_015083.1	189	Gag/Aag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266510	198266510	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	143	380	0	ENST00000335508.6:c.2326G>C	p.Glu776Gln	p.E776Q	ENST00000335508	NM_012433.2	776	Gaa/Caa																																																																														
KIT	3815	MSKCC	GRCh37	4	55594245	55594245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	152	444	0	ENST00000288135.5:c.1948C>T	p.His650Tyr	p.H650Y	ENST00000288135	NM_000222.2	650	Cac/Tac																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384035	84384035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	236	563	0	ENST00000321945.7:c.817G>C	p.Asp273His	p.D273H	ENST00000321945	NM_139076.2	273	Gac/Cac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271269	153271269	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	65	242	0	ENST00000281708.4:c.509G>C	p.Arg170Thr	p.R170T	ENST00000281708	NM_033632.3	170	aGa/aCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187531146	187531146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	138	323	0	ENST00000441802.2:c.9877C>A	p.Leu3293Met	p.L3293M	ENST00000441802	NM_005245.3	3293	Ctg/Atg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564474	86564474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	196	464	0	ENST00000274376.6:c.206C>T	p.Ser69Leu	p.S69L	ENST00000274376	NM_002890.2	69	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151853065	151853065	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	362	371	0	ENST00000262189.6:c.11890C>T	p.Gln3964Ter	p.Q3964*	ENST00000262189	NM_170606.2	3964	Cag/Tag																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139794883	139794883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	130	360	0	ENST00000247668.2:c.277G>T	p.Asp93Tyr	p.D93Y	ENST00000247668	NM_021138.3	93	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0034372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	340	571	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942194	81942194	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs147406608		P-0034372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	61	304	0	ENST00000359376.3:c.1731C>A	p.Phe577Leu	p.F577L	ENST00000359376	NM_002661.3	577	ttC/ttA																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610715	52610715	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0034372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	94	287	0	ENST00000394830.3:c.3459-1G>T		p.X1153_splice	ENST00000394830	NM_018313.4	1153																																																																															
NF1	4763	MSKCC	GRCh37	17	29546093	29546093	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	107	375	0	ENST00000358273.4:c.1598T>A	p.Val533Asp	p.V533D	ENST00000358273	NM_001042492.2	533	gTc/gAc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52621446	52621446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	267	467	0	ENST00000394830.3:c.2971G>A	p.Glu991Lys	p.E991K	ENST00000394830	NM_018313.4	991	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949074	44949074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	249	237	0	ENST00000377967.4:c.3635A>G	p.Gln1212Arg	p.Q1212R	ENST00000377967	NM_021140.2	1212	cAg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	23	653	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0034392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	15	663	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0034392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	63	356	0				ENST00000310581	NM_198253.2																																																																																
H3F3C	440093	MSKCC	GRCh37	12	31944973	31944973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	57	636	0	ENST00000340398.3:c.128C>T	p.Pro43Leu	p.P43L	ENST00000340398	NM_001013699.2	43	cCt/cTt																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1920280	1920280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	30	688	0	ENST00000382891.5:c.1340C>T	p.Ser447Phe	p.S447F	ENST00000382891	NM_133335.3	447	tCc/tTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149503815	149503815	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	68	561	0	ENST00000261799.4:c.2021G>A	p.Gly674Glu	p.G674E	ENST00000261799	NM_002609.3	674	gGa/gAa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041265	47041265	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0034392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	75	384	0	ENST00000329236.7:c.1459C>G	p.Pro487Ala	p.P487A	ENST00000329236	NM_001204466.1	487	Cct/Gct																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	65	287	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	282	643	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																														
APC	324	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	58	301	0	ENST00000257430.4:c.4463dup	p.Leu1488PhefsTer26	p.L1488Ffs*26	ENST00000257430	NM_000038.5	1487	act/acTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711906	89711906	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	150	596	1	ENST00000371953.3:c.524T>A	p.Val175Glu	p.V175E	ENST00000371953	NM_000314.4	175	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0034400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	38	224	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645308	67645308	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	90	463	0	ENST00000264010.4:c.573G>A	p.Trp191Ter	p.W191*	ENST00000264010	NM_006565.3	191	tgG/tgA																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	124	330	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	83	452	0	ENST00000263967.3:c.1625A>T	p.Glu542Val	p.E542V	ENST00000263967	NM_006218.2	542	gAa/gTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100093	157100120	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCGGCGGCAGCAGCAGGAGGCG	GCGGCGGCGGCGGCAGCAGCAGGAGGCG	-			P-0034400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	20	31	0	ENST00000346085.5:c.1044_1071del	p.Ala349MetfsTer11	p.A349Mfs*11	ENST00000346085	NM_020732.3	344	GCGGCGGCGGCGGCAGCAGCAGGAGGCGgc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	214	539	1	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
EED	8726	MSKCC	GRCh37	11	85977216	85977216	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	24	321	0	ENST00000263360.6:c.818C>G	p.Ala273Gly	p.A273G	ENST00000263360	NM_003797.3	273	gCa/gGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	344	655	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440001	56440001	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	289	557	0	ENST00000407977.2:c.591T>A	p.Tyr197Ter	p.Y197*	ENST00000407977		197	taT/taA																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208356	5208356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	354	700	0	ENST00000357368.4:c.5534C>T	p.Pro1845Leu	p.P1845L	ENST00000357368	NM_002850.3	1845	cCg/cTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942124	81942125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	179	642	1	ENST00000359376.3:c.1667dup	p.Lys557GlnfsTer16	p.K557Qfs*16	ENST00000359376	NM_002661.3	554	acg/acGg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28607287	28607287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	203	571	0	ENST00000253063.3:c.1417C>T	p.Arg473Cys	p.R473C	ENST00000253063	NM_031459.4	473	Cgt/Tgt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467523	66467523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	150	396	0	ENST00000273854.3:c.746G>A	p.Gly249Glu	p.G249E	ENST00000273854	NM_004439.5	249	gGa/gAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169102	32169102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	235	653	0	ENST00000375023.3:c.3931C>T	p.Gln1311Ter	p.Q1311*	ENST00000375023	NM_004557.3	1311	Cag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70349698	70349698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	194	282	0	ENST00000374080.3:c.3860G>A	p.Cys1287Tyr	p.C1287Y	ENST00000374080		1287	tGc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	581	619	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	141	257	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465600	8465600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	686	602	1	ENST00000356435.5:c.3580G>A	p.Ala1194Thr	p.A1194T	ENST00000356435		1194	Gct/Act																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670674	134670674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	376	730	0	ENST00000398015.3:c.585G>C	p.Lys195Asn	p.K195N	ENST00000398015	NM_004441.4	195	aaG/aaC																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593315	67593317	+	inframe_deletion	In_Frame_Del	DEL	GTA	GTA	-			P-0034431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	74	342	0	ENST00000274335.5:c.2061_2063del	p.Leu687_Tyr688delinsPhe	p.L687_Y688delinsF	ENST00000274335		687	ttGTAc/ttc																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68292191	68292191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	232	448	1	ENST00000487270.1:c.95G>T	p.Cys32Phe	p.C32F	ENST00000487270	NM_133509.3	32	tGt/tTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857616	9857616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	247	521	0	ENST00000330684.3:c.3785C>T	p.Thr1262Ile	p.T1262I	ENST00000330684	NM_001134407.1	1262	aCc/aTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306569	41306569	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	77	578	0	ENST00000373198.4:c.1090C>T	p.Arg364Ter	p.R364*	ENST00000373198	NM_133170.3	364	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68847399	68847399	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	71	466	0	ENST00000261769.5:c.1320+1G>T		p.X440_splice	ENST00000261769	NM_004360.3	440																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495016	56495016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	141	498	0	ENST00000267101.3:c.3373C>T	p.Arg1125Trp	p.R1125W	ENST00000267101	NM_001982.3	1125	Cgg/Tgg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	210	381	0	ENST00000335508.6:c.1873C>G	p.Arg625Gly	p.R625G	ENST00000335508	NM_012433.2	625	Cgt/Ggt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643334	52643334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	99	339	0	ENST00000394830.3:c.2562G>A	p.Met854Ile	p.M854I	ENST00000394830	NM_018313.4	854	atG/atA																																																																														
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	2349	453	0	ENST00000288135.5:c.2466T>G	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaG																																																																														
AGO2	27161	MSKCC	GRCh37	8	141551408	141551408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	185	597	0	ENST00000220592.5:c.1889G>A	p.Arg630His	p.R630H	ENST00000220592	NM_012154.3	630	cGc/cAc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223352	53223353	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	310	552	1	ENST00000375401.3:c.4006dup	p.Leu1336ProfsTer11	p.L1336Pfs*11	ENST00000375401	NM_004187.3	1336	ctc/cCtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	122	551	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120465043	120465043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	45	349	0	ENST00000256646.2:c.5029C>G	p.Gln1677Glu	p.Q1677E	ENST00000256646	NM_024408.3	1677	Cag/Gag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47108559	47108559	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	67	404	1	ENST00000409792.3:c.6109+1G>A		p.X2037_splice	ENST00000409792	NM_014159.6	2037																																																																															
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	248	564	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	19	659	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	339	626	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	79	325	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115916	8115916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	217	473	0	ENST00000346208.3:c.1262C>T	p.Pro421Leu	p.P421L	ENST00000346208		421	cCg/cTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106164779	106164779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	120	507	0	ENST00000380013.4:c.3647G>A	p.Arg1216Gln	p.R1216Q	ENST00000380013	NM_001127208.2	1216	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419987	41419987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	120	515	1	ENST00000373198.4:c.334C>T	p.Arg112Cys	p.R112C	ENST00000373198	NM_133170.3	112	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420871	49420871	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	133	656	2	ENST00000301067.7:c.14878C>T	p.Arg4960Ter	p.R4960*	ENST00000301067	NM_003482.3	4960	Cga/Tga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375560	15375560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1296	83	796	0	ENST00000263377.2:c.867G>C	p.Lys289Asn	p.K289N	ENST00000263377	NM_058243.2	289	aaG/aaC																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023727	31023727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	205	724	1	ENST00000375687.4:c.3212C>T	p.Ala1071Val	p.A1071V	ENST00000375687	NM_015338.5	1071	gCg/gTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098490	47098490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	42	520	0	ENST00000409792.3:c.6784C>G	p.Pro2262Ala	p.P2262A	ENST00000409792	NM_014159.6	2262	Ccc/Gcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	129	435	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0034499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	120	277	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	48	369	0	ENST00000369535.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000369535	NM_002524.4	12	gGt/gCt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	75	254	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
APC	324	MSKCC	GRCh37	5	112174268	112174268	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	147	286	0	ENST00000257430.4:c.2977A>T	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	993	Aag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15995239	15995239	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	228	516	0	ENST00000268712.3:c.2954del	p.Leu985TrpfsTer30	p.L985Wfs*30	ENST00000268712	NM_006311.3	985	tTg/tg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874334	151874335	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0034499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	107	436	0	ENST00000262189.6:c.8203_8204del	p.Leu2735ArgfsTer2	p.L2735Rfs*2	ENST00000262189	NM_170606.2	2735	TTa/a																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	33	546	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	90	605	1	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	15	291	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11924303	11924303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	12	39	0	ENST00000353533.5:c.100G>T	p.Val34Phe	p.V34F	ENST00000353533	NM_003010.3	34	Gtc/Ttc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437530	56437531	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	91	539	0	ENST00000407977.2:c.931dup	p.Leu311ProfsTer132	p.L311Pfs*132	ENST00000407977		311	ctc/cCtc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151650	55151651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATGTAAGTTCAAGGAACACAGACCTTTTTAGACCCAGATTTC			P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	18	587	0	ENST00000257290.5:c.2438_2439+41dup		p.-812fs	ENST00000257290	NM_006206.4	812	-/AATGTAAGTTCAAGGAACACAGACCTTTTTAGACCCAGATTTC																																																																														
APC	324	MSKCC	GRCh37	5	112175895	112176051	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTC	ATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTC	-			P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	25	249	0	ENST00000257430.4:c.4606_4762del	p.Glu1536HisfsTer62	p.E1536Hfs*62	ENST00000257430	NM_000038.5	1535	aATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCa/aa																																																																														
AR	367	MSKCC	GRCh37	X	66931337	66931337	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	92	249	0	ENST00000374690.3:c.1979T>G	p.Leu660Arg	p.L660R	ENST00000374690	NM_000044.3	660	cTg/cGg																																																																														
AR	367	MSKCC	GRCh37	X	66765448	66765450	+	missense_variant	Missense_Mutation	ONP	GAC	GAC	AAA			P-0034504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	24	284	0	ENST00000374690.3:c.460_462delinsAAA	p.Asp154Lys	p.D154K	ENST00000374690	NM_000044.3	154	GAC/AAA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	114	547	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0034515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	370	551	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858403	9858403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	156	509	0	ENST00000330684.3:c.2998G>A	p.Val1000Met	p.V1000M	ENST00000330684	NM_001134407.1	1000	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	54	227	0	ENST00000304494.5:c.281T>A	p.Leu94Gln	p.L94Q	ENST00000304494	NM_000077.4	94	cTg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	54	227	0	ENST00000304494.5:c.281T>A	p.Leu94Gln	p.L94Q	ENST00000304494	NM_000077.4	94	cTg/cAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47143010	47143010	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	76	491	4	ENST00000409792.3:c.4953delT	p.Phe1651LeufsTer12	p.F1651Lfs*12	ENST00000409792	NM_014159.6	1651	ttT/tt																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1940224	1940224	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	49	215	0	ENST00000382891.5:c.1721C>A	p.Ala574Asp	p.A574D	ENST00000382891	NM_133335.3	574	gCc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	609	577	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	178	414	1	ENST00000342988.3:c.1088G>A	p.Cys363Tyr	p.C363Y	ENST00000342988	NM_005359.5	363	tGt/tAt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432780	432780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	82	412	0	ENST00000399788.2:c.2136G>C	p.Gln712His	p.Q712H	ENST00000399788	NM_001042603.1	712	caG/caC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434136	49434136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	507	505	0	ENST00000301067.7:c.7417C>A	p.Gln2473Lys	p.Q2473K	ENST00000301067	NM_003482.3	2473	Cag/Aag																																																																														
CDK8	1024	MSKCC	GRCh37	13	26970440	26970441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	75	86	0	ENST00000381527.3:c.815dup	p.Met273AspfsTer3	p.M273Dfs*3	ENST00000381527	NM_001260.1	270	ata/atAa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631552	28631552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	275	295	0	ENST00000241453.7:c.416G>A	p.Gly139Glu	p.G139E	ENST00000241453	NM_004119.2	139	gGa/gAa																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38616972	38616972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	243	284	0	ENST00000299084.4:c.385G>A	p.Glu129Lys	p.E129K	ENST00000299084	NM_152594.2	129	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2951819	2951819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	83	503	0	ENST00000396946.4:c.3131C>A	p.Ala1044Asp	p.A1044D	ENST00000396946	NM_032415.4	1044	gCt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974711	21974716	+	inframe_deletion	In_Frame_Del	DEL	TTGGGC	TTGGGC	-			P-0034542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	252	340	0	ENST00000304494.5:c.111_116del	p.Pro38_Asn39del	p.P38_N39del	ENST00000304494	NM_000077.4	37	ctGCCCAAc/ctc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974711	21974716	+	inframe_deletion	In_Frame_Del	DEL	TTGGGC	TTGGGC	-			P-0034542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	252	340	0	ENST00000304494.5:c.111_116del	p.Pro38_Asn39del	p.P38_N39del	ENST00000304494	NM_000077.4	37	ctGCCCAAc/ctc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576888	7576888	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0034571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	62	611	1	ENST00000269305.4:c.958A>T	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	320	Aag/Tag																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856065	111856065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	47	458	0	ENST00000341259.2:c.116G>A	p.Arg39Gln	p.R39Q	ENST00000341259	NM_005475.2	39	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943961	71943961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	47	563	0	ENST00000298229.2:c.1894C>T	p.Leu632Phe	p.L632F	ENST00000298229	NM_001567.3	632	Ctc/Ttc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022240	31022240	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	19	190	0	ENST00000375687.4:c.1725A>T	p.Gln575His	p.Q575H	ENST00000375687	NM_015338.5	575	caA/caT																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643581	52643581	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	35	462	0	ENST00000394830.3:c.2315del	p.Pro772GlnfsTer3	p.P772Qfs*3	ENST00000394830	NM_018313.4	772	cCa/ca																																																																														
MET	4233	MSKCC	GRCh37	7	116418899	116418899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	35	329	0	ENST00000397752.3:c.3410C>A	p.Pro1137His	p.P1137H	ENST00000397752	NM_000245.2	1137	cCc/cAc																																																																														
CDH1	999	MSKCC	GRCh37	16	68842595	68842595	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0034577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	79	494	0	ENST00000261769.5:c.532-1G>A		p.X178_splice	ENST00000261769	NM_004360.3	178																																																																															
DDR2	4921	MSKCC	GRCh37	1	162748460	162748460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	153	453	0	ENST00000367921.3:c.2374C>G	p.Leu792Val	p.L792V	ENST00000367921	NM_006182.2	792	Ctg/Gtg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670447	134670447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	72	506	0	ENST00000398015.3:c.358G>T	p.Val120Phe	p.V120F	ENST00000398015	NM_004441.4	120	Gtc/Ttc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683415	182683415	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	50	432	0	ENST00000292782.4:c.130T>G	p.Phe44Val	p.F44V	ENST00000292782	NM_020640.2	44	Ttt/Gtt																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0034581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	219	272	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578214	28578214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1305	111	535	1	ENST00000241453.7:c.2957C>T	p.Pro986Leu	p.P986L	ENST00000241453	NM_004119.2	986	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	458	684	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39321517	39321517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	96	492	0	ENST00000373001.3:c.504C>A	p.Asn168Lys	p.N168K	ENST00000373001	NM_022157.3	168	aaC/aaA																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256667	16256667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	400	394	0	ENST00000375759.3:c.3932C>T	p.Pro1311Leu	p.P1311L	ENST00000375759	NM_015001.2	1311	cCt/cTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261434	16261434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	529	486	0	ENST00000375759.3:c.8699C>T	p.Ser2900Leu	p.S2900L	ENST00000375759	NM_015001.2	2900	tCg/tTg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115252203	115252203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	453	330	0	ENST00000369535.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000369535	NM_002524.4	146	gCc/gTc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246490517	246490517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	110	407	0	ENST00000388985.4:c.517G>A	p.Glu173Lys	p.E173K	ENST00000388985		173	Gaa/Aaa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572288	64572289	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AT			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	276	507	0	ENST00000337652.1:c.1366-1_1366delinsAT		p.X456_splice	ENST00000337652	NM_130803.2	456																																																																															
CBL	867	MSKCC	GRCh37	11	119149251	119149251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	265	492	0	ENST00000264033.4:c.1259G>T	p.Arg420Leu	p.R420L	ENST00000264033	NM_005188.3	420	cGa/cTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793483	18793483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	40	257	0	ENST00000266497.5:c.4180G>A	p.Glu1394Lys	p.E1394K	ENST00000266497		1394	Gaa/Aaa																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944740	31944740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	35	70	0	ENST00000340398.3:c.361C>T	p.Pro121Ser	p.P121S	ENST00000340398	NM_001013699.2	121	Ccc/Tcc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244162	46244163	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	171	343	0	ENST00000334344.6:c.2256_2257delinsTT	p.Gln752_Pro753delinsHisSer	p.Q752_P753delinsHS	ENST00000334344	NM_152641.2	752	caACct/caTTct																																																																														
POLE	5426	MSKCC	GRCh37	12	133208960	133208960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	295	490	0	ENST00000320574.5:c.6271C>T	p.Pro2091Ser	p.P2091S	ENST00000320574	NM_006231.2	2091	Ccc/Tcc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001309	29001309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	76	246	0	ENST00000282397.4:c.1423C>T	p.His475Tyr	p.H475Y	ENST00000282397	NM_002019.4	475	Cat/Tat																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022962	33022962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	100	311	0	ENST00000300177.4:c.71G>A	p.Gly24Glu	p.G24E	ENST00000300177	NM_001191322.1	24	gGg/gAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992066	72992066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	265	616	0	ENST00000268489.5:c.1979C>T	p.Thr660Ile	p.T660I	ENST00000268489	NM_006885.3	660	aCc/aTc																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217842	7217842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	364	563	0	ENST00000380728.2:c.169G>A	p.Glu57Lys	p.E57K	ENST00000380728		57	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	363	522	1	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998934	11998934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	88	272	0	ENST00000353533.5:c.436C>T	p.Leu146Phe	p.L146F	ENST00000353533	NM_003010.3	146	Ctt/Ttt																																																																														
NF1	4763	MSKCC	GRCh37	17	29592305	29592305	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	119	277	1	ENST00000358273.4:c.4783C>T	p.Gln1595Ter	p.Q1595*	ENST00000358273	NM_001042492.2	1595	Caa/Taa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879655	37879655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	382	663	0	ENST00000269571.5:c.2030G>A	p.Arg677Gln	p.R677Q	ENST00000269571		677	cGa/cAa																																																																														
YES1	7525	MSKCC	GRCh37	18	756583	756583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	131	316	0	ENST00000314574.4:c.245C>T	p.Pro82Leu	p.P82L	ENST00000314574	NM_005433.3	82	cCa/cTa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217865	2217865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	446	678	0	ENST00000398665.3:c.2639C>T	p.Pro880Leu	p.P880L	ENST00000398665	NM_032482.2	880	cCg/cTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7117281	7117281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	232	594	0	ENST00000302850.5:c.3935C>T	p.Pro1312Leu	p.P1312L	ENST00000302850	NM_000208.2	1312	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296145	15296145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	399	662	0	ENST00000263388.2:c.2219C>T	p.Ser740Phe	p.S740F	ENST00000263388	NM_000435.2	740	tCc/tTc																																																																														
ALK	238	MSKCC	GRCh37	2	29445417	29445417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	356	549	0	ENST00000389048.3:c.3416C>T	p.Pro1139Leu	p.P1139L	ENST00000389048	NM_004304.4	1139	cCc/cTc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61720085	61720085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	93	363	0	ENST00000401558.2:c.1349C>T	p.Ser450Phe	p.S450F	ENST00000401558	NM_003400.3	450	tCc/tTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	216	420	1	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023865	31023865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	284	534	0	ENST00000375687.4:c.3350C>T	p.Pro1117Leu	p.P1117L	ENST00000375687	NM_015338.5	1117	cCc/cTc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023882	31023882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	268	542	0	ENST00000375687.4:c.3367C>T	p.Pro1123Ser	p.P1123S	ENST00000375687	NM_015338.5	1123	Cca/Tca																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927964	49927964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	329	548	0	ENST00000296474.3:c.3764C>A	p.Ala1255Glu	p.A1255E	ENST00000296474	NM_002447.2	1255	gCg/gAg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807513	1807513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	183	633	0	ENST00000260795.2:c.1682G>A	p.Gly561Asp	p.G561D	ENST00000260795		561	gGt/gAt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750570	41750570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	114	437	0	ENST00000226382.2:c.58G>A	p.Gly20Arg	p.G20R	ENST00000226382	NM_003924.3	20	Ggg/Agg																																																																														
TERT	7015	MSKCC	GRCh37	5	1293880	1293880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	216	770	0	ENST00000310581.5:c.1121G>A	p.Gly374Glu	p.G374E	ENST00000310581	NM_198253.2	374	gGg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	206	233	0				ENST00000310581	NM_198253.2																																																																																
ROS1	6098	MSKCC	GRCh37	6	117686868	117686868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	31	188	1	ENST00000368508.3:c.2849C>T	p.Ser950Phe	p.S950F	ENST00000368508	NM_002944.2	950	tCt/tTt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958127	2958127	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	340	580	0	ENST00000396946.4:c.2605C>T	p.Arg869Trp	p.R869W	ENST00000396946	NM_032415.4	869	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979502	2979502	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	306	455	0	ENST00000396946.4:c.745C>T	p.Gln249Ter	p.Q249*	ENST00000396946	NM_032415.4	249	Cag/Tag																																																																														
HGF	3082	MSKCC	GRCh37	7	81355233	81355233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	170	305	0	ENST00000222390.5:c.1141C>G	p.Pro381Ala	p.P381A	ENST00000222390	NM_000601.4	381	Cca/Gca																																																																														
SMO	6608	MSKCC	GRCh37	7	128829281	128829281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	215	595	2	ENST00000249373.3:c.289G>A	p.Asp97Asn	p.D97N	ENST00000249373	NM_005631.4	97	Gac/Aac																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104018	69104018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	121	414	0	ENST00000288368.4:c.4408G>A	p.Asp1470Asn	p.D1470N	ENST00000288368	NM_024870.2	1470	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	225	448	2	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	225	448	2	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
TEK	7010	MSKCC	GRCh37	9	27180306	27180306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	287	476	0	ENST00000380036.4:c.970G>A	p.Asp324Asn	p.D324N	ENST00000380036	NM_000459.3	324	Gat/Aat																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223853	53223853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	512	404	1	ENST00000375401.3:c.3506C>T	p.Ser1169Leu	p.S1169L	ENST00000375401	NM_004187.3	1169	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	426	699	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905151	50905151	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137953986		P-0034607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	497	904	1	ENST00000440232.2:c.433G>A	p.Ala145Thr	p.A145T	ENST00000440232	NM_002691.3	145	Gct/Act																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266513	198266513	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	81	404	0	ENST00000335508.6:c.2323C>T	p.Arg775Ter	p.R775*	ENST00000335508	NM_012433.2	775	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	16	328	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900116	101900171	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTACTATTTATTTTTACCTTTAGGTTTACCATTGCTTGTTCAGAGAACAATTGC	GAGTACTATTTATTTTTACCTTTAGGTTTACCATTGCTTGTTCAGAGAACAATTGC	-			P-0034610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	16	202	0	ENST00000374994.4:c.575-22_608del		p.X192_splice	ENST00000374994	NM_004612.2	192																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	163	450	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	153	469	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	160	312	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	229	436	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970927	21970927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	250	476	0	ENST00000304494.5:c.431G>A	p.Arg144His	p.R144H	ENST00000304494	NM_000077.4	144	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970927	21970927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	250	476	0	ENST00000304494.5:c.431G>A	p.Arg144His	p.R144H	ENST00000304494	NM_000077.4	144	cGc/cAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772951	135772951	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	32	409	0	ENST00000298552.3:c.2672del	p.Asn891ThrfsTer40	p.N891Tfs*40	ENST00000298552	NM_001162426.1	891	aAc/ac																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56811512	56811512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	85	419	0	ENST00000337432.4:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000337432	NM_058216.2	354	Gca/Aca																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	209	563	9	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056281	27056281	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	153	394	0	ENST00000324856.7:c.1280del	p.Pro427ArgfsTer6	p.P427Rfs*6	ENST00000324856	NM_006015.4	426	aCc/ac																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662347	67662348	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	215	456	0	ENST00000264010.4:c.1593_1594del	p.Phe532ProfsTer27	p.F532Pfs*27	ENST00000264010	NM_006565.3	531	acCTtc/actc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164486	36164486	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	67	300	0	ENST00000300305.3:c.1389del	p.Thr464ProfsTer130	p.T464Pfs*130	ENST00000300305		463	ccC/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928083	178928115	+	inframe_deletion	In_Frame_Del	DEL	ATTTGCTGAACCCTATTGGTGTTACTGGATCAA	ATTTGCTGAACCCTATTGGTGTTACTGGATCAA	-			P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	152	435	0	ENST00000263967.3:c.1363_1395del	p.Leu455_Asn465del	p.L455_N465del	ENST00000263967	NM_006218.2	454	gATTTGCTGAACCCTATTGGTGTTACTGGATCAAat/gat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150449	157150449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	52	471	0	ENST00000346085.5:c.1631C>A	p.Pro544Gln	p.P544Q	ENST00000346085	NM_020732.3	544	cCg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105559	27105560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0034617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	201	489	0	ENST00000324856.7:c.5170_5171insGT	p.Leu1724ArgfsTer2	p.L1724Rfs*2	ENST00000324856	NM_006015.4	1724	ctg/cGTtg																																																																														
NF1	4763	MSKCC	GRCh37	17	29550586	29550586	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	47	255	0	ENST00000358273.4:c.1845+1G>T		p.X615_splice	ENST00000358273	NM_001042492.2	615																																																																															
RAD50	10111	MSKCC	GRCh37	5	131923740	131923740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	34	305	0	ENST00000265335.6:c.1010G>A	p.Arg337Lys	p.R337K	ENST00000265335		337	aGg/aAg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78425944	78425944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	47	365	0	ENST00000370768.2:c.1501C>T	p.Pro501Ser	p.P501S	ENST00000370768	NM_003902.3	501	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578215	7578221	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTGTT	AAGTGTT	-			P-0034622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	73	667	0	ENST00000269305.4:c.628_634del	p.Asn210PhefsTer35	p.N210Ffs*35	ENST00000269305	NM_001126112.2	210	AACACTTtt/tt																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17389772	17389772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	127	742	0	ENST00000359435.4:c.905C>T	p.Pro302Leu	p.P302L	ENST00000359435	NM_001033549.1	302	cCc/cTc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332868	152332868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	163	625	1	ENST00000206249.3:c.1174G>A	p.Val392Ile	p.V392I	ENST00000206249	NM_000125.3	392	Gtc/Atc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	205	448	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788656	3788656	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	330	422	0	ENST00000262367.5:c.4298A>G	p.Tyr1433Cys	p.Y1433C	ENST00000262367	NM_004380.2	1433	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579294	7579311	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCCCTCAGGGCAACTGAC	CCCCTCAGGGCAACTGAC	-			P-0034625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	324	440	0	ENST00000269305.4:c.375+1_375+18del		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
NOTCH1	4851	MSKCC	GRCh37	9	139399807	139399807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	498	723	0	ENST00000277541.6:c.4541G>A	p.Cys1514Tyr	p.C1514Y	ENST00000277541	NM_017617.3	1514	tGc/tAc																																																																														
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	42	217	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	256	658	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112174998	112174999	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	24	165	0	ENST00000257430.4:c.3709_3710del	p.Gln1237GlufsTer2	p.Q1237Efs*2	ENST00000257430	NM_000038.5	1236	gCA/g																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115415	115115415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	119	644	0	ENST00000257566.3:c.911G>A	p.Arg304Gln	p.R304Q	ENST00000257566	NM_016569.3	304	cGg/cAg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57480442	57480442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	92	233	0	ENST00000371085.3:c.437T>C	p.Phe146Ser	p.F146S	ENST00000371085	NM_000516.4	146	tTc/tCc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134977891	134977891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	36	435	0	ENST00000398015.3:c.2884C>T	p.Gln962Ter	p.Q962*	ENST00000398015	NM_004441.4	962	Cag/Tag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53231130	53231130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	183	506	0	ENST00000375401.3:c.1772G>A	p.Gly591Glu	p.G591E	ENST00000375401	NM_004187.3	591	gGa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	59	198	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108188136	108188136	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1800060		P-0034651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	127	412	1	ENST00000278616.4:c.6235G>A	p.Val2079Ile	p.V2079I	ENST00000278616	NM_000051.3	2079	Gtc/Atc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	417	473	2	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	252	914	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115969	8115970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0034651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	182	424	0	ENST00000346208.3:c.1316_1317dup	p.Thr440SerfsTer36	p.T440Sfs*36	ENST00000346208		439	gtc/gTCtc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244933	46244934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	179	770	0	ENST00000334344.6:c.3031dup	p.Arg1011LysfsTer46	p.R1011Kfs*46	ENST00000334344	NM_152641.2	1009	-/A																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30047495	30047495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	126	559	1	ENST00000331968.5:c.2506C>A	p.His836Asn	p.H836N	ENST00000331968	NM_002742.2	836	Cac/Aac																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871839	35871839	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	156	662	0	ENST00000216797.5:c.667C>G	p.Leu223Val	p.L223V	ENST00000216797	NM_020529.2	223	Ctc/Gtc																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839831	27839831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	154	641	1	ENST00000328488.2:c.263C>T	p.Ser88Leu	p.S88L	ENST00000328488	NM_003533.2	88	tCg/tTg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652204	36652205	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	223	787	0	ENST00000244741.5:c.328dup	p.His110ProfsTer19	p.H110Pfs*19	ENST00000244741	NM_000389.4	109	gac/gaCc																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798129	45798129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	93	766	1	ENST00000372115.3:c.680G>A	p.Arg227Gln	p.R227Q	ENST00000372115	NM_001048171.1	227	cGg/cAg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004643	16004643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	81	692	2	ENST00000268712.3:c.2611C>A	p.Pro871Thr	p.P871T	ENST00000268712	NM_006311.3	871	Ccc/Acc																																																																														
CIC	23152	MSKCC	GRCh37	19	42798211	42798211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	65	730	2	ENST00000575354.2:c.4165T>A	p.Ser1389Thr	p.S1389T	ENST00000575354	NM_015125.3	1389	Tct/Act																																																																														
AR	367	MSKCC	GRCh37	X	66931436	66931436	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	69	373	0	ENST00000374690.3:c.2078A>G	p.Asn693Ser	p.N693S	ENST00000374690	NM_000044.3	693	aAc/aGc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0034664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	158	307	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781371	3781371	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	828	714	0	ENST00000262367.5:c.4994A>C	p.Asp1665Ala	p.D1665A	ENST00000262367	NM_004380.2	1665	gAc/gCc																																																																														
MED12	9968	MSKCC	GRCh37	X	70349934	70349934	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	213	715	0	ENST00000374080.3:c.3917A>G	p.Asp1306Gly	p.D1306G	ENST00000374080		1306	gAc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	220	490	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	78	339	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	225	678	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962846	2962846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	88	726	0	ENST00000396946.4:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000396946	NM_032415.4	688	Cga/Tga																																																																														
MYC	4609	MSKCC	GRCh37	8	128750680	128750681	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCC			P-0034667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	126	557	0	ENST00000377970.2:c.219_221dup	p.Pro75dup	p.P75dup	ENST00000377970	NM_002467.4	75	acc/aCCCcc																																																																														
STK40	83931	MSKCC	GRCh37	1	36809512	36809512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	119	733	0	ENST00000373129.3:c.953G>A	p.Arg318His	p.R318H	ENST00000373129	NM_032017.1	318	cGc/cAc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623575	28623575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	210	570	0	ENST00000241453.7:c.982T>C	p.Tyr328His	p.Y328H	ENST00000241453	NM_004119.2	328	Tac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	298	515	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	205	746	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843595	156843595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139875058		P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	165	893	0	ENST00000524377.1:c.1021G>A	p.Val341Met	p.V341M	ENST00000524377	NM_002529.3	341	Gtg/Atg																																																																														
CCND3	896	MSKCC	GRCh37	6	41903745	41903746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	51	699	0	ENST00000372991.4:c.811dupC	p.Arg271ProfsTer53	p.R271Pfs*53	ENST00000372991	NM_001760.3	271	cgg/cCgg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061679	38061679	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	23	272	0	ENST00000250448.2:c.310A>T	p.Met104Leu	p.M104L	ENST00000250448	NM_004496.3	104	Atg/Ttg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89345514	89345514	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	60	429	0	ENST00000301030.4:c.7436A>T	p.Asp2479Val	p.D2479V	ENST00000301030	NM_001256183.1	2479	gAc/gTc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170818	99170825	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCCAA	GCCTCCAA	-			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	60	548	0	ENST00000074304.5:c.1448_1455del	p.Ala483GlyfsTer7	p.A483Gfs*7	ENST00000074304	NM_001134224.1	483	GCCTCCAAg/g																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143350324	143350324	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	66	255	0	ENST00000262992.4:c.136+2T>C		p.X46_splice	ENST00000262992	NM_001101669.1	46																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589553	67589585	+	inframe_deletion	In_Frame_Del	DEL	AAGATAATATTGAAGCTGTAGGGAAAAAATTAC	AAGATAATATTGAAGCTGTAGGGAAAAAATTAC	-			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	59	206	0	ENST00000274335.5:c.1317_1349del	p.Glu439_His450delinsAsp	p.E439_H450delinsD	ENST00000274335		439	gAAGATAATATTGAAGCTGTAGGGAAAAAATTACat/gat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106515237	106515237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	88	364	1	ENST00000359195.3:c.2380G>A	p.Gly794Arg	p.G794R	ENST00000359195	NM_002649.2	794	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	63	339	0				ENST00000310581	NM_198253.2																																																																																
TP53BP1	7158	MSKCC	GRCh37	15	43739599	43739599	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	82	481	0	ENST00000382044.4:c.2801T>A	p.Leu934Gln	p.L934Q	ENST00000382044	NM_001141980.1	934	cTa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142226874	142226883	+	protein_altering_variant	In_Frame_Del	DEL	CTACTGCCAG	CTACTGCCAG	ACAC			P-0034672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	72	640	3	ENST00000350721.4:c.4921_4930delinsGTGT	p.Leu1641_Ala1644delinsValSer	p.L1641_A1644delinsVS	ENST00000350721	NM_001184.3	1641	CTGGCAGTAGct/GTGTct																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039878	47039878	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	101	470	0	ENST00000329236.7:c.987T>G	p.Ile329Met	p.I329M	ENST00000329236	NM_001204466.1	329	atT/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	113	753	0	ENST00000269305.4:c.857A>C	p.Glu286Ala	p.E286A	ENST00000269305	NM_001126112.2	286	gAa/gCa																																																																														
NF1	4763	MSKCC	GRCh37	17	29483101	29483101	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	115	545	0	ENST00000358273.4:c.162del	p.Ile55Ter	p.I55*	ENST00000358273	NM_001042492.2	54	gTt/gt																																																																														
AR	367	MSKCC	GRCh37	X	66765093	66765093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	56	310	0	ENST00000374690.3:c.105G>C	p.Gln35His	p.Q35H	ENST00000374690	NM_000044.3	35	caG/caC																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0034682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	67	729	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
FH	2271	MSKCC	GRCh37	1	241663789	241663790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGATCC			P-0034684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	20	531	0	ENST00000366560.3:c.1331_1337dup	p.Asn446LysfsTer8	p.N446Kfs*8	ENST00000366560	NM_000143.3	446	aac/aaGGATCAAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188900	32188900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	151	962	0	ENST00000375023.3:c.654C>G	p.Phe218Leu	p.F218L	ENST00000375023	NM_004557.3	218	ttC/ttG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	492	687	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	340	643	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	95	555	6	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410486	63410486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	42	699	3	ENST00000330258.3:c.2681G>A	p.Arg894His	p.R894H	ENST00000330258	NM_152424.3	894	cGc/cAc																																																																														
SDHA	6389	MSKCC	GRCh37	5	228384	228384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	105	467	2	ENST00000264932.6:c.706G>A	p.Ala236Thr	p.A236T	ENST00000264932	NM_004168.2	236	Gca/Aca																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7989484	7989484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	252	638	0	ENST00000319144.4:c.202C>T	p.Arg68Cys	p.R68C	ENST00000319144	NM_001139.2	68	Cgc/Tgc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215947	41215947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	194	456	3	ENST00000357654.3:c.5096G>A	p.Arg1699Gln	p.R1699Q	ENST00000357654	NM_007294.3	1699	cGg/cAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120508105	120508105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6	203	405	0	ENST00000256646.2:c.1652C>T	p.Pro551Leu	p.P551L	ENST00000256646	NM_024408.3	551	cCg/cTg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137235	64137235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	40	700	0	ENST00000334205.4:c.1667G>A	p.Arg556Gln	p.R556Q	ENST00000334205	NM_003942.2	556	cGg/cAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118362641	118362641	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	77	418	2	ENST00000534358.1:c.5002C>T	p.Gln1668Ter	p.Q1668*	ENST00000534358	NM_005933.3	1668	Cag/Tag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130378	2130378	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	251	561	1	ENST00000219476.3:c.3610G>A	p.Gly1204Arg	p.G1204R	ENST00000219476	NM_000548.3	1204	Ggg/Agg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291914	15291914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	106	809	0	ENST00000263388.2:c.2852G>A	p.Arg951His	p.R951H	ENST00000263388	NM_000435.2	951	cGt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227657	36227657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	134	588	0	ENST00000222270.7:c.7226G>A	p.Arg2409Gln	p.R2409Q	ENST00000222270	NM_014727.1	2409	cGg/cAg																																																																														
ATR	545	MSKCC	GRCh37	3	142241620	142241620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	94	520	0	ENST00000350721.4:c.4216G>A	p.Ala1406Thr	p.A1406T	ENST00000350721	NM_001184.3	1406	Gcg/Acg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160646	56160646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	55	335	0	ENST00000399503.3:c.920G>A	p.Arg307His	p.R307H	ENST00000399503	NM_005921.1	307	cGt/cAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76938223	76938223	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	82	784	0	ENST00000373344.5:c.2525del	p.Pro842GlnfsTer27	p.P842Qfs*27	ENST00000373344	NM_000489.3	842	cCa/ca																																																																														
APC	324	MSKCC	GRCh37	5	112116509	112116509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	22	235	0	ENST00000257430.4:c.554C>T	p.Thr185Ile	p.T185I	ENST00000257430	NM_000038.5	185	aCc/aTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70345289	70345289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	21	678	0	ENST00000374080.3:c.2315A>G	p.Lys772Arg	p.K772R	ENST00000374080		772	aAg/aGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	617	379	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741688	17741688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	160	406	2	ENST00000250003.3:c.359G>A	p.Arg120His	p.R120H	ENST00000250003	NM_002478.4	120	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576865	7576865	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	243	578	0	ENST00000269305.4:c.981T>A	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taT/taA																																																																														
LATS2	26524	MSKCC	GRCh37	13	21555610	21555610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	348	495	1	ENST00000382592.4:c.2660G>A	p.Arg887His	p.R887H	ENST00000382592	NM_014572.2	887	cGc/cAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48937025	48937025	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	253	279	0	ENST00000267163.4:c.793A>T	p.Lys265Ter	p.K265*	ENST00000267163	NM_000321.2	265	Aaa/Taa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643743	52643743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	218	570	0	ENST00000394830.3:c.2153A>G	p.Tyr718Cys	p.Y718C	ENST00000394830	NM_018313.4	718	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0034708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	109	545	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244110	5244110	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141022401		P-0034708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	148	718	1	ENST00000357368.4:c.1372C>T	p.Arg458Cys	p.R458C	ENST00000357368	NM_002850.3	458	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	104	479	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0034709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	131	656	2	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
SETD8	387893	MSKCC	GRCh37	12	123875214	123875214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	75	352	1	ENST00000330479.4:c.170A>G	p.Tyr57Cys	p.Y57C	ENST00000330479	NM_020382.3	57	tAc/tGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425218	49425219	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGCTCTTCCCGAGGTTCCTGCT			P-0034709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1316	105	919	0	ENST00000301067.7:c.13247_13269dup	p.Cys4424SerfsTer16	p.C4424Sfs*16	ENST00000301067	NM_003482.3	4423	-/AGCAGGAACCTCGGGAAGAGCCA																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134885835	134885835	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	43	464	0	ENST00000398015.3:c.1746C>A	p.Tyr582Ter	p.Y582*	ENST00000398015	NM_004441.4	582	taC/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	491	739	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	257	312	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	257	312	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
FGF3	2248	MSKCC	GRCh37	11	69631132	69631132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	246	623	0	ENST00000334134.2:c.280G>A	p.Gly94Arg	p.G94R	ENST00000334134	NM_005247.2	94	Ggg/Agg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	257	312	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674218	117674218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	51	597	0	ENST00000368508.3:c.4256C>T	p.Ser1419Phe	p.S1419F	ENST00000368508	NM_002944.2	1419	tCc/tTc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176050348	176050348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	11	421	0	ENST00000367669.3:c.1217G>T	p.Arg406Leu	p.R406L	ENST00000367669	NM_022457.5	406	cGa/cTa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946849	17946849	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	130	552	0	ENST00000458235.1:c.1798C>T	p.Gln600Ter	p.Q600*	ENST00000458235	NM_000215.3	600	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251982	153251986	+	frameshift_variant	Frame_Shift_Del	DEL	TTACT	TTACT	-			P-0034713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	35	622	0	ENST00000281708.4:c.1020_1024del	p.Lys340AsnfsTer21	p.K340Nfs*21	ENST00000281708	NM_033632.3	340	aaAGTAAta/aata																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	269	826	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	33	238	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78931459	78931459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	176	762	3	ENST00000306801.3:c.3406G>A	p.Gly1136Ser	p.G1136S	ENST00000306801	NM_020761.2	1136	Ggc/Agc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95593044	95593046	+	missense_variant	Missense_Mutation	ONP	GGT	GGT	CCA			P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	136	677	1	ENST00000343455.3:c.774_776delinsTGG	p.Pro259Gly	p.P259G	ENST00000343455	NM_177438.2	258	ggACCa/ggTGGa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827888	72827888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	187	852	0	ENST00000268489.5:c.8693C>T	p.Ala2898Val	p.A2898V	ENST00000268489	NM_006885.3	2898	gCc/gTc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575673	48575673	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	136	763	2	ENST00000342988.3:c.433G>T	p.Gly145Ter	p.G145*	ENST00000342988	NM_005359.5	145	Gga/Tga																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047332	128047332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	144	632	0	ENST00000285398.2:c.590G>A	p.Cys197Tyr	p.C197Y	ENST00000285398	NM_000122.1	197	tGc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	374	778	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112175213	112175213	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	107	266	0	ENST00000257430.4:c.3922A>T	p.Lys1308Ter	p.K1308*	ENST00000257430	NM_000038.5	1308	Aaa/Taa																																																																														
ALK	238	MSKCC	GRCh37	2	29443657	29443657	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	444	794	0	ENST00000389048.3:c.3560T>C	p.Leu1187Pro	p.L1187P	ENST00000389048	NM_004304.4	1187	cTg/cCg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662128	227662128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	352	648	0	ENST00000305123.5:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000305123	NM_005544.2	443	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443617	49443617	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	90	660	0	ENST00000301067.7:c.3754C>G	p.Arg1252Gly	p.R1252G	ENST00000301067	NM_003482.3	1252	Cga/Gga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857202	9857202	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	37	439	0	ENST00000330684.3:c.4199A>G	p.Tyr1400Cys	p.Y1400C	ENST00000330684	NM_001134407.1	1400	tAt/tGt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50827550	50827551	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0034732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	45	433	0	ENST00000398568.2:c.2435_2436delinsTT	p.Gln812Leu	p.Q812L	ENST00000398568	NM_001042412.1	812	cAG/cTT																																																																														
TP53	7157	MSKCC	GRCh37	17	7579718	7579740	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGTCTGAAAGACAAGAGCAGAA	AAGTCTGAAAGACAAGAGCAGAA	-			P-0034732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	92	559	0	ENST00000269305.4:c.75-19_78del		p.X25_splice	ENST00000269305	NM_001126112.2	25																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53250049	53250049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	128	248	0	ENST00000375401.3:c.200C>T	p.Pro67Leu	p.P67L	ENST00000375401	NM_004187.3	67	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	365	778	2	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49432480	49432480	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	144	774	0	ENST00000301067.7:c.8659G>T	p.Gly2887Ter	p.G2887*	ENST00000301067	NM_003482.3	2887	Gga/Tga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156836734	156836734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	187	853	0	ENST00000524377.1:c.392C>A	p.Ser131Tyr	p.S131Y	ENST00000524377	NM_002529.3	131	tCc/tAc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43762212	43762212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	191	903	2	ENST00000382044.4:c.1233G>T	p.Gln411His	p.Q411H	ENST00000382044	NM_001141980.1	411	caG/caT																																																																														
CIC	23152	MSKCC	GRCh37	19	42791587	42791587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	372	731	0	ENST00000575354.2:c.568C>T	p.Arg190Cys	p.R190C	ENST00000575354	NM_015125.3	190	Cgc/Tgc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164429	47164429	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	90	429	0	ENST00000409792.3:c.1697C>G	p.Ser566Cys	p.S566C	ENST00000409792	NM_014159.6	566	tCt/tGt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967314	134967314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	94	491	0	ENST00000398015.3:c.2653C>A	p.Pro885Thr	p.P885T	ENST00000398015	NM_004441.4	885	Ccg/Acg																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1957453	1957453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	108	604	1	ENST00000382891.5:c.2552C>T	p.Ala851Val	p.A851V	ENST00000382891	NM_133335.3	851	gCg/gTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280052	66280052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	135	397	0	ENST00000273854.3:c.1637C>A	p.Ala546Glu	p.A546E	ENST00000273854	NM_004439.5	546	gCa/gAa																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	20	539	0	ENST00000368323.3:c.270G>C	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atC																																																																														
STK11	6794	MSKCC	GRCh37	19	1220706	1220706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	50	726	0	ENST00000326873.7:c.727del	p.Val243SerfsTer44	p.V243Sfs*44	ENST00000326873	NM_000455.4	242	Ggg/gg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600408	10600408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	85	905	1	ENST00000171111.5:c.1447C>T	p.Arg483Cys	p.R483C	ENST00000171111	NM_203500.1	483	Cgc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	41988724	41988724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	30	490	1	ENST00000219905.7:c.1516G>A	p.Glu506Lys	p.E506K	ENST00000219905	NM_001164273.1	506	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273269	55273269	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	57	518	0	ENST00000275493.2:c.3592C>G	p.Leu1198Val	p.L1198V	ENST00000275493	NM_005228.3	1198	Cta/Gta																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039611	47039611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0034750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	47	600	0	ENST00000329236.7:c.829G>C	p.Glu277Gln	p.E277Q	ENST00000329236	NM_001204466.1	277	Gag/Cag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822033	72822033	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	37	471	0	ENST00000268489.5:c.10142G>C	p.Arg3381Pro	p.R3381P	ENST00000268489	NM_006885.3	3381	cGg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	62	797	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223238	41223238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	47	544	0	ENST00000357654.3:c.4693G>A	p.Glu1565Lys	p.E1565K	ENST00000357654	NM_007294.3	1565	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0034763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	28	415	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222738	53222738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	52	514	0	ENST00000375401.3:c.4198G>T	p.Glu1400Ter	p.E1400*	ENST00000375401	NM_004187.3	1400	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	46	442	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0034773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	9	240	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	77	552	0	ENST00000269305.4:c.636dup	p.Arg213SerfsTer3	p.R213Sfs*3	ENST00000269305	NM_001126112.2	212	-/T																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713582	30713583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAT			P-0034773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	43	403	0	ENST00000359013.4:c.985_988dup	p.Leu330HisfsTer8	p.L330Hfs*8	ENST00000359013	NM_001024847.2	328	aac/aACATac																																																																														
AR	367	MSKCC	GRCh37	X	66931306	66931306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	11	236	0	ENST00000374690.3:c.1948A>G	p.Thr650Ala	p.T650A	ENST00000374690	NM_000044.3	650	Acc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	462	819	0	ENST00000269305.4:c.398T>C	p.Met133Thr	p.M133T	ENST00000269305	NM_001126112.2	133	aTg/aCg																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27777915	27777915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	39	351	0	ENST00000369163.2:c.64G>A	p.Ala22Thr	p.A22T	ENST00000369163	NM_003536.2	22	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0034782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	266	328	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0034782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	104	338	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664915	138664915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	26	252	0	ENST00000330315.3:c.650C>T	p.Ser217Phe	p.S217F	ENST00000330315	NM_023067.3	217	tCc/tTc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114905857	114905857	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0034782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	314	502	0	ENST00000543371.1:c.875+1G>C		p.X292_splice	ENST00000543371	NM_001198531.1	292																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41748146	41748146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	21	348	0	ENST00000226382.2:c.623G>T	p.Cys208Phe	p.C208F	ENST00000226382	NM_003924.3	208	tGc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	459	489	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	151	366	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	134	447	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
FANCA	2175	MSKCC	GRCh37	16	89839765	89839765	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs34592408		P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	236	610	0	ENST00000389301.3:c.1928C>G	p.Pro643Arg	p.P643R	ENST00000389301	NM_000135.2	643	cCc/cGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	358	433	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112176030	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	111	302	0	ENST00000257430.4:c.4741delT	p.Ser1581LeufsTer69	p.S1581Lfs*69	ENST00000257430	NM_000038.5	1580	aTt/at																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249399	153249399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	208	517	0	ENST00000281708.4:c.1379A>G	p.His460Arg	p.H460R	ENST00000281708	NM_033632.3	460	cAt/cGt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2120571	2120571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	528	579	1	ENST00000219476.3:c.1831C>T	p.Arg611Trp	p.R611W	ENST00000219476	NM_000548.3	611	Cgg/Tgg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120133	70120145	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCACACGCTGA	GCGCACACGCTGA	-			P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	89	179	0	ENST00000245479.2:c.1135_1147del	p.Ala379ProfsTer3	p.A379Pfs*3	ENST00000245479	NM_000346.3	379	GCGCACACGCTGAcc/cc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622099	1622099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	26	615	0	ENST00000344749.5:c.776G>C	p.Ser259Thr	p.S259T	ENST00000344749	NM_001136139.2	259	aGt/aCt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184736	32184736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	159	488	1	ENST00000375023.3:c.1847C>A	p.Pro616His	p.P616H	ENST00000375023	NM_004557.3	616	cCc/cAc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288705	33288705	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	220	426	0	ENST00000374542.5:c.847T>G	p.Phe283Val	p.F283V	ENST00000374542	NM_001141970.1	283	Ttc/Gtc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396321	139396321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	198	625	0	ENST00000277541.6:c.5517C>A	p.Asp1839Glu	p.D1839E	ENST00000277541	NM_017617.3	1839	gaC/gaA																																																																														
ATRX	546	MSKCC	GRCh37	X	76938622	76938622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	204	293	0	ENST00000373344.5:c.2126A>G	p.Asp709Gly	p.D709G	ENST00000373344	NM_000489.3	709	gAt/gGt																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127933444	127933444	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	212	385	0	ENST00000373547.4:c.91G>C	p.Val31Leu	p.V31L	ENST00000373547	NM_002721.4	31	Gtt/Ctt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331724	8331724	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	86	354	0	ENST00000356435.5:c.5392C>G	p.Arg1798Gly	p.R1798G	ENST00000356435		1798	Cga/Gga																																																																														
PGR	5241	MSKCC	GRCh37	11	100996861	100996861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	59	493	0	ENST00000325455.5:c.1666C>A	p.Gln556Lys	p.Q556K	ENST00000325455	NM_001202474.3	556	Caa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41536160	41536161	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0034788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	189	480	1	ENST00000263253.7:c.1777_1778delinsTT	p.Pro593Phe	p.P593F	ENST00000263253	NM_001429.3	593	CCt/TTt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2974255	2974255	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	81	572	0	ENST00000396946.4:c.1350del	p.Arg451GlyfsTer5	p.R451Gfs*5	ENST00000396946	NM_032415.4	450	ccC/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390827	139390827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	92	623	0	ENST00000277541.6:c.7364C>T	p.Thr2455Ile	p.T2455I	ENST00000277541	NM_017617.3	2455	aCt/aTt																																																																														
ABL1	25	MSKCC	GRCh37	9	133738348	133738348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	90	415	1	ENST00000318560.5:c.748G>A	p.Gly250Arg	p.G250R	ENST00000318560	NM_005157.4	250	Ggg/Agg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	50	453	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0034795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	66	443	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0034795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	75	264	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0034795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	81	464	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	73	305	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68849467	68849467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			655	152	619	0	ENST00000261769.5:c.1370C>T	p.Thr457Met	p.T457M	ENST00000261769	NM_004360.3	457	aCg/aTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685287	89685287	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	41	273	1	ENST00000371953.3:c.182A>T	p.His61Leu	p.H61L	ENST00000371953	NM_000314.4	61	cAt/cTt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21565541	21565541	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0034795-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	128	476	0	ENST00000382592.4:c.345G>C	p.Glu115Asp	p.E115D	ENST00000382592	NM_014572.2	115	gaG/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	107	435	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	141	563	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	95	539	1	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023919	27023937	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCAGCTGCGGCGGCGGC	CGGCAGCTGCGGCGGCGGC	-			P-0034796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	31	77	0	ENST00000324856.7:c.1027_1045del	p.Ala343ProfsTer14	p.A343Pfs*14	ENST00000324856	NM_006015.4	342	gCGGCAGCTGCGGCGGCGGCc/gc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426093	49426094	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0034796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	142	571	0	ENST00000301067.7:c.12394dup	p.His4132ProfsTer36	p.H4132Pfs*36	ENST00000301067	NM_003482.3	4132	cac/cCac																																																																														
NF1	4763	MSKCC	GRCh37	17	29667566	29667566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	130	535	0	ENST00000358273.4:c.6965T>C	p.Val2322Ala	p.V2322A	ENST00000358273	NM_001042492.2	2322	gTg/gCg																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020739	26020739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	27	239	0	ENST00000357647.3:c.22G>A	p.Ala8Thr	p.A8T	ENST00000357647	NM_003529.2	8	Gct/Act																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	220	273	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	284	282	0				ENST00000310581	NM_198253.2																																																																																
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	187	334	0	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560371	95560371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	89	412	0	ENST00000343455.3:c.5218G>T	p.Val1740Phe	p.V1740F	ENST00000343455	NM_177438.2	1740	Gtc/Ttc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2185916	2185916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	264	429	0	ENST00000398665.3:c.188A>G	p.Tyr63Cys	p.Y63C	ENST00000398665	NM_032482.2	63	tAt/tGt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125278	47125278	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	131	471	1	ENST00000409792.3:c.5992C>T	p.Gln1998Ter	p.Q1998*	ENST00000409792	NM_014159.6	1998	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891608	151891608	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	103	367	0	ENST00000262189.6:c.4424A>T	p.Asn1475Ile	p.N1475I	ENST00000262189	NM_170606.2	1475	aAt/aTt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	68	469	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	57	313	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	50	631	1	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	146	430	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806176	1806176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	346	773	0	ENST00000260795.2:c.1195C>T	p.Arg399Cys	p.R399C	ENST00000260795		399	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	40	671	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ALK	238	MSKCC	GRCh37	2	29456453	29456453	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	237	667	0	ENST00000389048.3:c.2465del	p.Gly822ValfsTer9	p.G822Vfs*9	ENST00000389048	NM_004304.4	822	gGt/gt																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871052	12871053	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	64	226	0	ENST00000228872.4:c.285dup	p.Lys96GlnfsTer29	p.K96Qfs*29	ENST00000228872	NM_004064.3	93	-/C																																																																														
AXL	558	MSKCC	GRCh37	19	41744385	41744385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	185	594	0	ENST00000301178.4:c.1010delC	p.Pro337LeufsTer29	p.P337Lfs*29	ENST00000301178	NM_021913.4	335	ggC/gg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867149	45867149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	251	714	0	ENST00000391945.4:c.970C>T	p.Arg324Cys	p.R324C	ENST00000391945	NM_000400.3	324	Cgc/Tgc																																																																														
TP63	8626	MSKCC	GRCh37	3	189586503	189586503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs143591434		P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	124	299	0	ENST00000264731.3:c.1127G>A	p.Arg376His	p.R376H	ENST00000264731	NM_003722.4	376	cGc/cAc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321390	1321390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	41	380	1	ENST00000381566.1:c.365C>T	p.Pro122Leu	p.P122L	ENST00000381566		122	cCg/cTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118895	115118895	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	205	433	0	ENST00000257566.3:c.446A>G	p.Tyr149Cys	p.Y149C	ENST00000257566	NM_016569.3	149	tAc/tGc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919007	50919007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	234	619	0	ENST00000440232.2:c.2744C>T	p.Ala915Val	p.A915V	ENST00000440232	NM_002691.3	915	gCg/gTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508856	106508856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	157	424	0	ENST00000359195.3:c.850G>A	p.Glu284Lys	p.E284K	ENST00000359195	NM_002649.2	284	Gaa/Aaa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905288	50905288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	53	861	0	ENST00000440232.2:c.496C>T	p.Arg166Trp	p.R166W	ENST00000440232	NM_002691.3	166	Cgg/Tgg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730074	41730074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	71	551	0	ENST00000242208.4:c.455G>A	p.Arg152His	p.R152H	ENST00000242208	NM_002192.2	152	cGt/cAt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783245	9783245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	253	556	0	ENST00000377346.4:c.2489G>A	p.Arg830His	p.R830H	ENST00000377346	NM_005026.3	830	cGt/cAt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259480	16259480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	181	411	2	ENST00000375759.3:c.6750del	p.Ala2251GlnfsTer102	p.A2251Qfs*102	ENST00000375759	NM_015001.2	2249	Ccc/cc																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	237	584	4	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200267	138200267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	62	442	0	ENST00000237289.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000237289	NM_001270507.1	562	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438211	49438211	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	86	810	1	ENST00000301067.7:c.5058delA	p.Lys1686AsnfsTer36	p.K1686Nfs*36	ENST00000301067	NM_003482.3	1686	aaA/aa																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137075	64137075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	241	443	1	ENST00000334205.4:c.1586G>A	p.Arg529His	p.R529H	ENST00000334205	NM_003942.2	529	cGc/cAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639245	3639245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	143	870	0	ENST00000294008.3:c.4394G>A	p.Arg1465His	p.R1465H	ENST00000294008	NM_032444.2	1465	cGt/cAt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15383774	15383774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	226	637	0	ENST00000263377.2:c.137C>T	p.Pro46Leu	p.P46L	ENST00000263377	NM_058243.2	46	cCg/cTg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651144	206651144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	338	728	0	ENST00000367120.3:c.754C>T	p.Arg252Trp	p.R252W	ENST00000367120	NM_014002.3	252	Cgg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100975	41100975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	193	537	1	ENST00000373198.4:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000373198	NM_133170.3	461	Cga/Tga																																																																														
STAT3	6774	MSKCC	GRCh37	17	40498610	40498610	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	231	471	0	ENST00000264657.5:c.250C>T	p.Arg84Ter	p.R84*	ENST00000264657	NM_139276.2	84	Cga/Tga																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793797	89793799	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	189	480	0	ENST00000336032.3:c.868_870del	p.Pro290del	p.P290del	ENST00000336032	NM_006813.2	289	tCTCct/tct																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291061	10291061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	249	655	1	ENST00000340748.4:c.410C>T	p.Thr137Met	p.T137M	ENST00000340748		137	aCg/aTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692783	89692783	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	104	416	0	ENST00000371953.3:c.270delT	p.Phe90LeufsTer9	p.F90Lfs*9	ENST00000371953	NM_000314.4	89	ccT/cc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11269500	11269500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	144	447	0	ENST00000361445.4:c.3670G>T	p.Asp1224Tyr	p.D1224Y	ENST00000361445	NM_004958.3	1224	Gat/Tat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262237	16262237	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	111	213	0	ENST00000375759.3:c.9502C>T	p.Arg3168Ter	p.R3168*	ENST00000375759	NM_015001.2	3168	Cga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325840	65325840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	185	420	2	ENST00000342505.4:c.1282G>A	p.Ala428Thr	p.A428T	ENST00000342505	NM_002227.2	428	Gcc/Acc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206667311	206667311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	220	612	0	ENST00000367120.3:c.2104C>T	p.Arg702Cys	p.R702C	ENST00000367120	NM_014002.3	702	Cgc/Tgc																																																																														
FH	2271	MSKCC	GRCh37	1	241675280	241675280	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	199	517	0	ENST00000366560.3:c.542T>C	p.Val181Ala	p.V181A	ENST00000366560	NM_000143.3	181	gTt/gCt																																																																														
CCND1	595	MSKCC	GRCh37	11	69465887	69465887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	220	548	0	ENST00000227507.2:c.725A>G	p.Asp242Gly	p.D242G	ENST00000227507	NM_053056.2	242	gAc/gGc																																																																														
FGF19	9965	MSKCC	GRCh37	11	69518052	69518052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	250	750	3	ENST00000294312.3:c.313G>A	p.Ala105Thr	p.A105T	ENST00000294312	NM_005117.2	105	Gcc/Acc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939788	71939788	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	76	689	0	ENST00000298229.2:c.419del	p.Pro140ArgfsTer39	p.P140Rfs*39	ENST00000298229	NM_001567.3	139	Ccc/cc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	402077	402077	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	147	584	0	ENST00000399788.2:c.4714A>G	p.Lys1572Glu	p.K1572E	ENST00000399788	NM_001042603.1	1572	Aaa/Gaa																																																																														
ETV6	2120	MSKCC	GRCh37	12	12037492	12037492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	137	334	0	ENST00000396373.4:c.1123G>A	p.Gly375Arg	p.G375R	ENST00000396373	NM_001987.4	375	Gga/Aga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424729	49424729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	342	647	0	ENST00000301067.7:c.13618C>T	p.Arg4540Trp	p.R4540W	ENST00000301067	NM_003482.3	4540	Cgg/Tgg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562904	21562904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	284	570	1	ENST00000382592.4:c.1015G>A	p.Ala339Thr	p.A339T	ENST00000382592	NM_014572.2	339	Gcc/Acc																																																																														
CD276	80381	MSKCC	GRCh37	15	73994859	73994859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	12	40	0	ENST00000318443.5:c.343G>A	p.Ala115Thr	p.A115T	ENST00000318443	NM_001024736.1	115	Gcg/Acg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	341247	341247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	321	678	0	ENST00000262320.3:c.2237G>A	p.Cys746Tyr	p.C746Y	ENST00000262320	NM_003502.3	746	tGc/tAc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56867129	56867129	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	198	504	0	ENST00000308159.5:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000308159	NM_014669.4	450	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821148	72821148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	279	642	0	ENST00000268489.5:c.11027C>T	p.Ala3676Val	p.A3676V	ENST00000268489	NM_006885.3	3676	gCg/gTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993669	72993669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	94	598	0	ENST00000268489.5:c.376G>A	p.Val126Met	p.V126M	ENST00000268489	NM_006885.3	126	Gtg/Atg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210735	5210735	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	285	752	0	ENST00000357368.4:c.5316T>G	p.Asn1772Lys	p.N1772K	ENST00000357368	NM_002850.3	1772	aaT/aaG																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10260302	10260302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	184	520	0	ENST00000340748.4:c.2365G>A	p.Gly789Arg	p.G789R	ENST00000340748		789	Ggg/Agg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11022897	11022897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	159	867	1	ENST00000327064.4:c.596C>T	p.Ser199Leu	p.S199L	ENST00000327064	NM_199141.1	199	tCg/tTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11130307	11130307	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1213692147		P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	249	529	1	ENST00000344626.4:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000344626	NM_003072.3	849	cGg/cAg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797191	42797191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	146	828	1	ENST00000575354.2:c.3553G>A	p.Ala1185Thr	p.A1185T	ENST00000575354	NM_015125.3	1185	Gcc/Acc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714732	52714732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	110	597	0	ENST00000322088.6:c.490G>A	p.Ala164Thr	p.A164T	ENST00000322088	NM_014225.5	164	Gcg/Acg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47709983	47709985	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	148	287	0	ENST00000233146.2:c.2704_2706del	p.Glu902del	p.E902del	ENST00000233146	NM_000251.2	900	tcAGAa/tca																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319093	62319093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	266	735	0	ENST00000508582.2:c.1523C>T	p.Pro508Leu	p.P508L	ENST00000508582		508	cCg/cTg																																																																														
NF2	4771	MSKCC	GRCh37	22	30069292	30069292	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	203	628	2	ENST00000338641.4:c.1160del	p.Lys387ArgfsTer39	p.K387Rfs*39	ENST00000338641	NM_000268.3	386	gAa/ga																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434123	12434123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	129	373	0	ENST00000287820.6:c.491G>A	p.Arg164Gln	p.R164Q	ENST00000287820	NM_015869.4	164	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178943828	178943828	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	80	351	0	ENST00000263967.3:c.2495G>A	p.Arg832Gln	p.R832Q	ENST00000263967	NM_006218.2	832	cGa/cAa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1980598	1980598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	223	474	0	ENST00000382891.5:c.4060C>T	p.Arg1354Trp	p.R1354W	ENST00000382891	NM_133335.3	1354	Cgg/Tgg																																																																														
TET2	54790	MSKCC	GRCh37	4	106156519	106156519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	155	368	0	ENST00000380013.4:c.1420C>A	p.Pro474Thr	p.P474T	ENST00000380013	NM_001127208.2	474	Ccg/Acg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38960610	38960610	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	95	221	0	ENST00000357387.3:c.1741del	p.Tyr581ThrfsTer24	p.Y581Tfs*24	ENST00000357387	NM_152756.3	581	Tac/ac																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450251	50450251	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	53	458	0	ENST00000331340.3:c.435C>G	p.Phe145Leu	p.F145L	ENST00000331340	NM_006060.4	145	ttC/ttG																																																																														
MET	4233	MSKCC	GRCh37	7	116340043	116340043	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	106	281	0	ENST00000397752.3:c.908del	p.Lys303ArgfsTer31	p.K303Rfs*31	ENST00000397752	NM_000245.2	302	gAa/ga																																																																														
EZH2	2146	MSKCC	GRCh37	7	148515092	148515092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	264	532	0	ENST00000320356.2:c.1117C>A	p.Pro373Thr	p.P373T	ENST00000320356	NM_004456.4	373	Ccc/Acc																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38162894	38162894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	98	639	0	ENST00000317025.8:c.2312G>A	p.Gly771Glu	p.G771E	ENST00000317025	NM_023034.1	771	gGg/gAg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38187060	38187060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	222	856	0	ENST00000317025.8:c.1417G>A	p.Ala473Thr	p.A473T	ENST00000317025	NM_023034.1	473	Gcg/Acg																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006101	22006101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	230	549	0	ENST00000276925.6:c.302G>A	p.Arg101Gln	p.R101Q	ENST00000276925	NM_004936.3	101	cGg/cAg																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564080	139564080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	160	689	0	ENST00000308874.7:c.220C>T	p.Arg74Cys	p.R74C	ENST00000308874		74	Cgc/Tgc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	155	541	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																														
WT1	7490	MSKCC	GRCh37	11	32456672	32456672	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	37	422	0	ENST00000332351.3:c.220C>G	p.Arg74Gly	p.R74G	ENST00000332351	NM_024426.4	74	Cgg/Ggg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527300	157527300	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0034917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	48	266	0	ENST00000346085.5:c.5026-1G>C		p.X1676_splice	ENST00000346085	NM_020732.3	1676																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	376	517	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0034919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	373	606	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65349044	65349046	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0034919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	118	389	0	ENST00000342505.4:c.119_121del	p.Phe40del	p.F40del	ENST00000342505	NM_002227.2	40	tTCTat/tat																																																																														
APC	324	MSKCC	GRCh37	5	112173723	112173723	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0034919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	156	289	0	ENST00000257430.4:c.2432C>G	p.Ser811Ter	p.S811*	ENST00000257430	NM_000038.5	811	tCa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	120	387	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108126889	108126943	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATACTAAATTATTTATGAAATATATATATTTTTATTTGTGGTTTACTTTAAGAT	TATACTAAATTATTTATGAAATATATATATTTTTATTTGTGGTTTACTTTAAGAT	-			P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	31	182	0	ENST00000278616.4:c.2125-51_2128del		p.X709_splice	ENST00000278616	NM_000051.3	709																																																																															
MAX	4149	MSKCC	GRCh37	14	65544669	65544674	+	inframe_deletion	In_Frame_Del	DEL	TCAATA	TCAATA	-			P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	74	680	0	ENST00000358664.4:c.252_257del	p.Ile85_Asp86del	p.I85_D86del	ENST00000358664	NM_002382.4	84	gaTATTGAc/gac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	71	556	0	ENST00000269305.4:c.625del	p.Arg209GlufsTer38	p.R209Efs*38	ENST00000269305	NM_001126112.2	209	Aga/ga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176684069	176684069	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	46	619	0	ENST00000439151.2:c.4883T>C	p.Met1628Thr	p.M1628T	ENST00000439151	NM_022455.4	1628	aTg/aCg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066503	94066503	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	26	297	0	ENST00000369303.4:c.1256A>T	p.Asn419Ile	p.N419I	ENST00000369303	NM_004440.3	419	aAt/aTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974775	21974775	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	40	230	0	ENST00000304494.5:c.52A>C	p.Thr18Pro	p.T18P	ENST00000304494	NM_000077.4	18	Acg/Ccg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974775	21974775	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	40	230	0	ENST00000304494.5:c.52A>C	p.Thr18Pro	p.T18P	ENST00000304494	NM_000077.4	18	Acg/Ccg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0034929-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	45	565	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655403	45655403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034929-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	25	576	0	ENST00000407780.3:c.449C>T	p.Ser150Phe	p.S150F	ENST00000407780	NM_001283052.1	150	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	20	406	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	61	621	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	35	401	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	35	401	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	35	401	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44937715	44937715	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	21	233	0	ENST00000377967.4:c.2903del	p.Thr968LysfsTer2	p.T968Kfs*2	ENST00000377967	NM_021140.2	968	aCa/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	173	435	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	391	766	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	139	396	0	ENST00000377767.4:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000377767	NM_014953.3	479	Gac/Tac																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12013744	12013744	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	84	274	0	ENST00000353533.5:c.685+1G>T		p.X229_splice	ENST00000353533	NM_003010.3	229																																																																															
RARA	5914	MSKCC	GRCh37	17	38511668	38511668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	84	406	0	ENST00000254066.5:c.1166C>T	p.Ala389Val	p.A389V	ENST00000254066	NM_000964.3	389	gCc/gTc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30686391	30686391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	164	327	0	ENST00000359013.4:c.322G>T	p.Val108Phe	p.V108F	ENST00000359013	NM_001024847.2	108	Gtc/Ttc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31401654	31401667	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATCTGGGGAAAATT	ATCTGGGGAAAATT	-			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	77	410	1	ENST00000344624.3:c.3997_4010del	p.Asn1333GlyfsTer31	p.N1333Gfs*31	ENST00000344624		1333	AATTTTCCCCAGATg/g																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285901	38285901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	129	516	0	ENST00000425967.3:c.510G>C	p.Glu170Asp	p.E170D	ENST00000425967	NM_001174067.1	170	gaG/gaC																																																																														
JAK2	3717	MSKCC	GRCh37	9	5073738	5073738	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	161	367	2	ENST00000381652.3:c.1817A>T	p.His606Leu	p.H606L	ENST00000381652	NM_004972.3	606	cAc/cTc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436653	52436653	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	125	495	0	ENST00000460680.1:c.2021del	p.Phe674SerfsTer18	p.F674Sfs*18	ENST00000460680	NM_004656.3	674	tTc/tc																																																																														
MED12	9968	MSKCC	GRCh37	X	70356739	70356739	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	107	464	0	ENST00000374080.3:c.5411T>A	p.Met1804Lys	p.M1804K	ENST00000374080		1804	aTg/aAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	41	507	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0034970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	52	428	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0034970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	104	580	1	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	42	294	0	ENST00000342988.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000342988	NM_005359.5	493	gAt/gGt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	46	573	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53254021	53254021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	29	262	0	ENST00000375401.3:c.51C>G	p.Phe17Leu	p.F17L	ENST00000375401	NM_004187.3	17	ttC/ttG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	49	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	131	619	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	157	435	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	527	732	1	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175100	112175101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	21	201	0	ENST00000257430.4:c.3814dup	p.Ser1272PhefsTer4	p.S1272Ffs*4	ENST00000257430	NM_000038.5	1270	tgt/tgTt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206706	36206706	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	137	630	0	ENST00000300305.3:c.805+1G>A		p.X269_splice	ENST00000300305		269																																																																															
PHOX2B	8929	MSKCC	GRCh37	4	41750456	41750456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	190	412	0	ENST00000226382.2:c.172C>T	p.Pro58Ser	p.P58S	ENST00000226382	NM_003924.3	58	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028137	69028137	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	64	512	0	ENST00000288368.4:c.3296A>T	p.His1099Leu	p.H1099L	ENST00000288368	NM_024870.2	1099	cAt/cTt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099429	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAACAG	CAGCAGCAGCAGCAGCAGCAGCAACAG	-	rs910569810		P-0034998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	35	240	0	ENST00000346085.5:c.360_386del	p.Gln123_Gln131del	p.Q123_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAACAG/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7576856	7576856	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	76	573	0	ENST00000269305.4:c.990del	p.Gln331ArgfsTer14	p.Q331Rfs*14	ENST00000269305	NM_001126112.2	330	ctT/ct																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021721	71021721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	41	330	2	ENST00000318789.4:c.1637C>A	p.Pro546Gln	p.P546Q	ENST00000318789	NM_032682.5	546	cCa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112173466	112173466	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	24	237	0	ENST00000257430.4:c.2177delT	p.Leu726Ter	p.L726*	ENST00000257430	NM_000038.5	725	gcT/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	122	401	0	ENST00000256078.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	13	Ggc/Cgc																																																																														
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	167	617	0	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag																																																																														
LMO1	4004	MSKCC	GRCh37	11	8246235	8246235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	90	486	0	ENST00000335790.3:c.399C>A	p.Asn133Lys	p.N133K	ENST00000335790	NM_002315.2	133	aaC/aaA																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497701	125497702	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	103	475	0	ENST00000428830.2:c.265_266delinsTT	p.Gly89Leu	p.G89L	ENST00000428830	NM_001114121.2	89	GGa/TTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398267	25398267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	139	447	0	ENST00000256078.4:c.52G>T	p.Ala18Ser	p.A18S	ENST00000256078	NM_033360.2	18	Gcc/Tcc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437110	110437110	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	25	74	0	ENST00000375856.3:c.1291A>T	p.Met431Leu	p.M431L	ENST00000375856	NM_003749.2	431	Atg/Ttg																																																																														
BLM	641	MSKCC	GRCh37	15	91341555	91341555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	126	513	0	ENST00000355112.3:c.3346G>A	p.Asp1116Asn	p.D1116N	ENST00000355112	NM_000057.2	1116	Gac/Aac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602890	10602890	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	198	746	0	ENST00000171111.5:c.688del	p.Thr230ProfsTer8	p.T230Pfs*8	ENST00000171111	NM_203500.1	230	Acc/cc																																																																														
EP300	2033	MSKCC	GRCh37	22	41556727	41556727	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	72	325	0	ENST00000263253.7:c.3671+1G>T		p.X1224_splice	ENST00000263253	NM_001429.3	1224																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947865	178947865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	62	384	0	ENST00000263967.3:c.2740G>A	p.Gly914Arg	p.G914R	ENST00000263967	NM_006218.2	914	Gga/Aga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	108	411	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	14	248	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	112	504	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161221	56161221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781300314		P-0035006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	156	471	0	ENST00000399503.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000399503	NM_005921.1	364	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711993	89711993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	101	306	0	ENST00000371953.3:c.611C>T	p.Pro204Leu	p.P204L	ENST00000371953	NM_000314.4	204	cCa/cTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693000	89693000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	86	337	0	ENST00000371953.3:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000371953	NM_000314.4	162	Gac/Tac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023388	27023388	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	118	243	0	ENST00000324856.7:c.494delC	p.Ala165GlyfsTer67	p.A165Gfs*67	ENST00000324856	NM_006015.4	165	gCg/gg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717626	89717626	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	107	303	0	ENST00000371953.3:c.651del	p.Cys218AlafsTer3	p.C218Afs*3	ENST00000371953	NM_000314.4	217	gtC/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645196	67645197	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	115	478	0	ENST00000264010.4:c.462dup	p.Cys155MetfsTer8	p.C155Mfs*8	ENST00000264010	NM_006565.3	154	ata/atAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528625	157528625	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	120	552	0	ENST00000346085.5:c.6351del	p.Arg2117SerfsTer28	p.R2117Sfs*28	ENST00000346085	NM_020732.3	2117	aGg/ag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087524	27087524	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	271	587	0	ENST00000324856.7:c.2098del	p.Val700LeufsTer42	p.V700Lfs*42	ENST00000324856	NM_006015.4	700	Gtt/tt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982384	201982385	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0035008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	263	563	0	ENST00000359651.3:c.764_765delAA	p.Lys255ArgfsTer45	p.K255Rfs*45	ENST00000359651		255	AAa/a																																																																														
KDM5A	5927	MSKCC	GRCh37	12	394782	394784	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0035008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	95	415	0	ENST00000399788.2:c.4911_4913del	p.His1637del	p.H1637del	ENST00000399788	NM_001042603.1	1637	caTCAa/caa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650795	37650795	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	113	415	0	ENST00000447079.4:c.2267A>G	p.Lys756Arg	p.K756R	ENST00000447079	NM_015083.1	756	aAg/aGg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0035011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	79	465	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
RET	5979	MSKCC	GRCh37	10	43615110	43615110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	70	645	0	ENST00000355710.3:c.2524G>A	p.Asp842Asn	p.D842N	ENST00000355710	NM_020975.4	842	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108129803	108129803	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	106	309	0	ENST00000278616.4:c.2466+1G>A		p.X822_splice	ENST00000278616	NM_000051.3	822																																																																															
STK11	6794	MSKCC	GRCh37	19	1207112	1207112	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	129	726	0	ENST00000326873.7:c.200del	p.Leu67ArgfsTer29	p.L67Rfs*29	ENST00000326873	NM_000455.4	67	cTg/cg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68965366	68965366	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	114	676	0	ENST00000288368.4:c.978T>A	p.Asn326Lys	p.N326K	ENST00000288368	NM_024870.2	326	aaT/aaA																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696601	47696601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	109	486	0	ENST00000347630.2:c.347C>G	p.Ala116Gly	p.A116G	ENST00000347630	NM_001007230.1	116	gCt/gGt																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1961360	1961360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	213	607	1	ENST00000382891.5:c.3148G>A	p.Glu1050Lys	p.E1050K	ENST00000382891	NM_133335.3	1050	Gag/Aag																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143114262	143114262	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	84	419	0	ENST00000262992.4:c.1159A>G	p.Arg387Gly	p.R387G	ENST00000262992	NM_001101669.1	387	Aga/Gga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176618884	176618884	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	86	441	0	ENST00000439151.2:c.928-1G>A		p.X310_splice	ENST00000439151	NM_022455.4	310																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	538	704	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879604	37879604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	634	899	0	ENST00000269571.5:c.1979G>A	p.Gly660Asp	p.G660D	ENST00000269571		660	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578251	7578251	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	246	708	0	ENST00000269305.4:c.598A>T	p.Asn200Tyr	p.N200Y	ENST00000269305	NM_001126112.2	200	Aat/Tat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247174	153247174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	111	325	0	ENST00000281708.4:c.1628G>C	p.Arg543Thr	p.R543T	ENST00000281708	NM_033632.3	543	aGa/aCa																																																																														
APC	324	MSKCC	GRCh37	5	112175389	112175392	+	frameshift_variant	Frame_Shift_Del	DEL	TCAG	TCAG	GC			P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	88	273	1	ENST00000257430.4:c.4098_4101delinsGC	p.Gln1367HisfsTer7	p.Q1367Hfs*7	ENST00000257430	NM_000038.5	1366	gcTCAG/gcGC																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323002	31323002	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	226	842	0	ENST00000412585.2:c.896-2A>G		p.X299_splice	ENST00000412585	NM_005514.6	299																																																																															
ATRX	546	MSKCC	GRCh37	X	76849314	76849314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	166	410	0	ENST00000373344.5:c.5962G>T	p.Ala1988Ser	p.A1988S	ENST00000373344	NM_000489.3	1988	Gct/Tct																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0035074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	17	440	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
TET2	54790	MSKCC	GRCh37	4	106155491	106155491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	63	315	0	ENST00000380013.4:c.392G>A	p.Arg131Lys	p.R131K	ENST00000380013	NM_001127208.2	131	aGa/aAa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911254	29911254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	14	278	0	ENST00000376809.5:c.553G>A	p.Asp185Asn	p.D185N	ENST00000376809	NM_002116.7	185	Gat/Aat																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323093	31323093	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0035074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	45	756	0	ENST00000412585.2:c.895+1G>T		p.X299_splice	ENST00000412585	NM_005514.6	299																																																																															
EPHA7	2045	MSKCC	GRCh37	6	94128989	94128989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	62	323	0	ENST00000369303.4:c.71C>G	p.Thr24Arg	p.T24R	ENST00000369303	NM_004440.3	24	aCa/aGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	143	503	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	77	361	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	68	214	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0035078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	42	321	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	261	673	0	ENST00000269305.4:c.96+1G>A		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
KDR	3791	MSKCC	GRCh37	4	55980343	55980343	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs140419104		P-0035078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	100	514	0	ENST00000263923.4:c.748A>G	p.Thr250Ala	p.T250A	ENST00000263923	NM_002253.2	250	Act/Gct																																																																														
APC	324	MSKCC	GRCh37	5	112154723	112154724	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAACTTTGCT			P-0035078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	198	559	1	ENST00000257430.4:c.995_1004dup	p.Ala336AsnfsTer7	p.A336Nfs*7	ENST00000257430	NM_000038.5	332	cga/cGAACTTTGCTga																																																																														
HGF	3082	MSKCC	GRCh37	7	81372698	81372698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	82	357	2	ENST00000222390.5:c.836G>A	p.Arg279His	p.R279H	ENST00000222390	NM_000601.4	279	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	27	404	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1517	284	724	0	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc																																																																														
SRC	6714	MSKCC	GRCh37	20	36031750	36031750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	202	527	1	ENST00000358208.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000358208		527	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307414	118307416	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0035079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	10	17	0	ENST00000534358.1:c.200_202delCGG	p.Ala67del	p.A67del	ENST00000534358	NM_005933.3	63	GCG/-																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31395698	31395698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	136	356	0	ENST00000328111.2:c.2551G>A	p.Ala851Thr	p.A851T	ENST00000328111	NM_006892.3	851	Gca/Aca																																																																														
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0035080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	114	409	0	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	136	514	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434170	121434170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	308	692	1	ENST00000257555.6:c.1061C>A	p.Thr354Lys	p.T354K	ENST00000257555		354	aCg/aAg																																																																														
MGA	23269	MSKCC	GRCh37	15	42042345	42042345	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	120	530	0	ENST00000219905.7:c.6543del	p.Leu2182Ter	p.L2182*	ENST00000219905	NM_001164273.1	2180	ggC/gg																																																																														
NF1	4763	MSKCC	GRCh37	17	29679351	29679351	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	139	414	0	ENST00000358273.4:c.7535del	p.Gly2512AlafsTer11	p.G2512Afs*11	ENST00000358273	NM_001042492.2	2512	Ggc/gc																																																																														
ARAF	369	MSKCC	GRCh37	X	47428224	47428228	+	missense_variant	Missense_Mutation	ONP	ATGTG	ATGTG	GTGTT			P-0035080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	92	835	0	ENST00000377045.4:c.1184_1188delinsGTGTT	p.His395Arg	p.H395R	ENST00000377045	NM_001654.4	395	cATGTG/cGTGTT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	65	468	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0035083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	147	766	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	502	555	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CASP8	841	MSKCC	GRCh37	2	202141586	202141586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	207	354	0	ENST00000358485.4:c.874C>T	p.Arg292Trp	p.R292W	ENST00000358485	NM_001080125.1	292	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0035093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	451	490	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100436	8100436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	352	643	1	ENST00000346208.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000346208		137	tCg/tTg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740875	58740875	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	206	396	0	ENST00000305921.3:c.1780T>G	p.Leu594Val	p.L594V	ENST00000305921	NM_003620.3	594	Tta/Gta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	96	478	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	294	932	1	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023258	27023265	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGG	GGCGGCGG	C			P-0035105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	61	160	0	ENST00000324856.7:c.364_371delinsC	p.Gly122ProfsTer108	p.G122Pfs*108	ENST00000324856	NM_006015.4	122	GGCGGCGGc/Cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	336	713	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142215244	142215244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	131	473	1	ENST00000350721.4:c.5857G>A	p.Ala1953Thr	p.A1953T	ENST00000350721	NM_001184.3	1953	Gct/Act																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959064	2959064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	334	668	1	ENST00000396946.4:c.2452C>T	p.Arg818Trp	p.R818W	ENST00000396946	NM_032415.4	818	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874945	151874945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	169	410	1	ENST00000262189.6:c.7593G>T	p.Met2531Ile	p.M2531I	ENST00000262189	NM_170606.2	2531	atG/atT																																																																														
APC	324	MSKCC	GRCh37	5	112175189	112175189	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	91	254	0	ENST00000257430.4:c.3899del	p.Asn1300IlefsTer5	p.N1300Ifs*5	ENST00000257430	NM_000038.5	1300	Aat/at																																																																														
MGA	23269	MSKCC	GRCh37	15	42028610	42028610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	132	571	0	ENST00000219905.7:c.4148G>A	p.Arg1383Gln	p.R1383Q	ENST00000219905	NM_001164273.1	1383	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0035107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	197	750	0	ENST00000269305.4:c.454_455del	p.Pro152AlafsTer28	p.P152Afs*28	ENST00000269305	NM_001126112.2	152	CCg/g																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618689	37618690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	180	469	0	ENST00000447079.4:c.366dup	p.Leu123ThrfsTer4	p.L123Tfs*4	ENST00000447079	NM_015083.1	122	tta/ttAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577537	7577537	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	659	715	0	ENST00000269305.4:c.744del	p.Arg249GlyfsTer96	p.R249Gfs*96	ENST00000269305	NM_001126112.2	248	cgG/cg																																																																														
CIC	23152	MSKCC	GRCh37	19	42798154	42798154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1607	165	790	0	ENST00000575354.2:c.4108G>C	p.Val1370Leu	p.V1370L	ENST00000575354	NM_015125.3	1370	Gtg/Ctg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38962637	38962637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	18	410	0	ENST00000357387.3:c.1618C>T	p.His540Tyr	p.H540Y	ENST00000357387	NM_152756.3	540	Cat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0035119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	277	548	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37866098	37866098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	583	670	0	ENST00000269571.5:c.607C>T	p.Arg203Cys	p.R203C	ENST00000269571		203	Cgc/Tgc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061113	38061185	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	CTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	-			P-0035119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	434	110	1	ENST00000250448.2:c.804_876del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tgCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAG/tg																																																																														
HGF	3082	MSKCC	GRCh37	7	81399235	81399249	+	inframe_deletion	In_Frame_Del	DEL	TGCAGGAGGACATGC	TGCAGGAGGACATGC	-			P-0035119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	193	596	0	ENST00000222390.5:c.39_53del	p.Gln13_Leu17del	p.Q13_L17del	ENST00000222390	NM_000601.4	13	caGCATGTCCTCCTGCAt/cat																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38187288	38187288	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	90	744	0	ENST00000317025.8:c.1189A>T	p.Lys397Ter	p.K397*	ENST00000317025	NM_023034.1	397	Aaa/Taa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100310	8100311	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	37	686	1	ENST00000346208.3:c.284_285delinsAA	p.Pro95Gln	p.P95Q	ENST00000346208		95	cCC/cAA																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64136270	64136270	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	29	549	0	ENST00000334205.4:c.1428+1G>T		p.X476_splice	ENST00000334205	NM_003942.2	476																																																																															
DIS3	22894	MSKCC	GRCh37	13	73348124	73348124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	23	481	0	ENST00000377767.4:c.1061G>T	p.Arg354Ile	p.R354I	ENST00000377767	NM_014953.3	354	aGa/aTa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515435	103515435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	14	255	0	ENST00000355739.4:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000355739	NM_000123.3	646	Gaa/Aaa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30194800	30194800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	38	616	0	ENST00000331968.5:c.345G>C	p.Gln115His	p.Q115H	ENST00000331968	NM_002742.2	115	caG/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	44	614	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220707	1220707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	34	579	0	ENST00000326873.7:c.725G>T	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGg/gTg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210728	2210728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	21	569	0	ENST00000398665.3:c.1225C>T	p.Arg409Cys	p.R409C	ENST00000398665	NM_032482.2	409	Cgc/Tgc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911488	134911488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	27	486	0	ENST00000398015.3:c.1953G>T	p.Lys651Asn	p.K651N	ENST00000398015	NM_004441.4	651	aaG/aaT																																																																														
ATR	545	MSKCC	GRCh37	3	142217561	142217561	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	29	482	0	ENST00000350721.4:c.5436A>T	p.Lys1812Asn	p.K1812N	ENST00000350721	NM_001184.3	1812	aaA/aaT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	20	501	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187519178	187519178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	29	465	0	ENST00000441802.2:c.12205G>T	p.Val4069Phe	p.V4069F	ENST00000441802	NM_005245.3	4069	Gtc/Ttc																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271572	26271572	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	25	297	0	ENST00000305910.3:c.41del	p.Gly14AlafsTer23	p.G14Afs*23	ENST00000305910	NM_003534.2	14	gGc/gc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729515	41729515	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	26	578	0	ENST00000242208.4:c.1014G>C	p.Trp338Cys	p.W338C	ENST00000242208	NM_002192.2	338	tgG/tgC																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287319	38287319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	26	649	1	ENST00000425967.3:c.338G>T	p.Arg113Leu	p.R113L	ENST00000425967	NM_001174067.1	113	cGc/cTc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101895010	101895010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	10	208	0	ENST00000374994.4:c.563G>T	p.Gly188Val	p.G188V	ENST00000374994	NM_004612.2	188	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	34	744	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098700	47098700	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	62	832	0	ENST00000409792.3:c.6574C>G	p.Pro2192Ala	p.P2192A	ENST00000409792	NM_014159.6	2192	Ccc/Gcc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	87	268	0	ENST00000281708.4:c.1436G>C	p.Arg479Pro	p.R479P	ENST00000281708	NM_033632.3	479	cGa/cCa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254930	16254930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	110	475	0	ENST00000375759.3:c.2195G>A	p.Arg732Gln	p.R732Q	ENST00000375759	NM_015001.2	732	cGa/cAa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560263	95560263	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	133	468	0	ENST00000343455.3:c.5326C>G	p.Gln1776Glu	p.Q1776E	ENST00000343455	NM_177438.2	1776	Cag/Gag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540587	187540587	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	84	488	0	ENST00000441802.2:c.7153G>C	p.Asp2385His	p.D2385H	ENST00000441802	NM_005245.3	2385	Gat/Cat																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911302	29911302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	103	427	0	ENST00000376809.5:c.601G>C	p.Glu201Gln	p.E201Q	ENST00000376809	NM_002116.7	201	Gag/Cag																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29912276	29912276	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	208	700	0	ENST00000376809.5:c.896-1G>A		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																															
NBN	4683	MSKCC	GRCh37	8	90965846	90965846	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	77	431	0	ENST00000265433.3:c.1471G>C	p.Glu491Gln	p.E491Q	ENST00000265433	NM_002485.4	491	Gaa/Caa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	219	518	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259554	55259554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	190	483	0	ENST00000275493.2:c.2612C>G	p.Ala871Gly	p.A871G	ENST00000275493	NM_005228.3	871	gCa/gGa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2985561	2985561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	134	455	0	ENST00000396946.4:c.250G>A	p.Gly84Arg	p.G84R	ENST00000396946	NM_032415.4	84	Ggg/Agg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247897	10247897	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	192	693	0	ENST00000340748.4:c.4305C>G	p.Asp1435Glu	p.D1435E	ENST00000340748		1435	gaC/gaG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578503	7578518	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGCAGGTCTTGGC	CAGGGCAGGTCTTGGC	-			P-0035160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	617	817	0	ENST00000269305.4:c.412_427delGCCAAGACCTGCCCTG	p.Ala138CysfsTer27	p.A138Cfs*27	ENST00000269305	NM_001126112.2	138	GCCAAGACCTGCCCTGtg/tg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2122986	2122986	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0035160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	181	502	0	ENST00000219476.3:c.2355+2T>G		p.X785_splice	ENST00000219476	NM_000548.3	785																																																																															
XPO1	7514	MSKCC	GRCh37	2	61713087	61713087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	106	329	0	ENST00000401558.2:c.2324A>C	p.Asn775Thr	p.N775T	ENST00000401558	NM_003400.3	775	aAt/aCt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874425	151874425	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	177	506	0	ENST00000262189.6:c.8113G>T	p.Glu2705Ter	p.E2705*	ENST00000262189	NM_170606.2	2705	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	169	560	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	110	370	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578428	7578429	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	79	859	0	ENST00000269305.4:c.501_502insT	p.His168SerfsTer13	p.H168Sfs*13	ENST00000269305	NM_001126112.2	167	-/T																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099405	4099405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	44	724	0	ENST00000262948.5:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000262948	NM_030662.3	238	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905462	50905462	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	251	809	0	ENST00000440232.2:c.590G>C	p.Ser197Thr	p.S197T	ENST00000440232	NM_002691.3	197	aGc/aCc																																																																														
EP300	2033	MSKCC	GRCh37	22	41547970	41547970	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	220	664	0	ENST00000263253.7:c.2951T>A	p.Val984Glu	p.V984E	ENST00000263253	NM_001429.3	984	gTg/gAg																																																																														
APC	324	MSKCC	GRCh37	5	112151191	112151191	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	124	395	0	ENST00000257430.4:c.836del		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																															
AMER1	139285	MSKCC	GRCh37	X	63411813	63411813	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	264	454	0	ENST00000330258.3:c.1354del	p.Glu452AsnfsTer3	p.E452Nfs*3	ENST00000330258	NM_152424.3	452	Gaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	20	617	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
RB1	5925	MSKCC	GRCh37	13	49030403	49030403	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	159	372	0	ENST00000267163.4:c.1880del	p.Asn627MetfsTer16	p.N627Mfs*16	ENST00000267163	NM_000321.2	626	gcA/gc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150448	157150448	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	220	497	0	ENST00000346085.5:c.1630C>G	p.Pro544Ala	p.P544A	ENST00000346085	NM_020732.3	544	Ccg/Gcg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390162	89390162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	67	368	1	ENST00000336596.2:c.911G>T	p.Cys304Phe	p.C304F	ENST00000336596	NM_005233.5	304	tGc/tTc																																																																														
VHL	7428	MSKCC	GRCh37	3	10188306	10188307	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	130	580	0	ENST00000256474.2:c.450dup	p.Ile151TyrfsTer23	p.I151Yfs*23	ENST00000256474	NM_000551.3	150	aat/aaTt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5055680	5055680	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	37	288	1	ENST00000381652.3:c.948A>T	p.Leu316Phe	p.L316F	ENST00000381652	NM_004972.3	316	ttA/ttT																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914653	39914653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	95	308	0	ENST00000378444.4:c.4709C>T	p.Thr1570Ile	p.T1570I	ENST00000378444	NM_001123385.1	1570	aCc/aTc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0035173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	124	407	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637689	52637689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	150	535	0	ENST00000394830.3:c.2627G>A	p.Arg876His	p.R876H	ENST00000394830	NM_018313.4	876	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	351	684	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	255	482	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624107	89624283	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GAGCGAGGGGCATCAGCTACCGCCAAGTCCAGAGCCATTTCCATCCTGCAGAAGAAGCCCCGCCACCAGCAGCTTCTGCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGAT	GAGCGAGGGGCATCAGCTACCGCCAAGTCCAGAGCCATTTCCATCCTGCAGAAGAAGCCCCGCCACCAGCAGCTTCTGCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGAT	-			P-0035208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	27	99	0	ENST00000371953.3:c.-119_58del		p.*40*	ENST00000371953	NM_000314.4	40																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061006	38061033	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCGGGGGCCGGCGCGCCCTCTAGCT	GGCCCGGGGGCCGGCGCGCCCTCTAGCT	-			P-0035208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	174	344	0	ENST00000250448.2:c.956_983del	p.Gln319ProfsTer22	p.Q319Pfs*22	ENST00000250448	NM_004496.3	319	cAGCTAGAGGGCGCGCCGGCCCCCGGGCCc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	436	691	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0035214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	32	238	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68845649	68845649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	63	557	1	ENST00000261769.5:c.895G>A	p.Ala299Thr	p.A299T	ENST00000261769	NM_004360.3	299	Gcc/Acc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793418	242793419	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0035214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	322	637	0	ENST00000334409.5:c.658_659inv	p.Ser220Asp	p.S220D	ENST00000334409	NM_005018.2	220	TCt/GAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	84	511	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	120	330	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088763	27088763	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	102	434	0	ENST00000324856.7:c.2372A>G	p.Asn791Ser	p.N791S	ENST00000324856	NM_006015.4	791	aAc/aGc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458801	120458801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	107	483	0	ENST00000256646.2:c.6544C>T	p.Pro2182Ser	p.P2182S	ENST00000256646	NM_024408.3	2182	Cct/Tct																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468187	120468187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	133	447	0	ENST00000256646.2:c.4252C>T	p.Pro1418Ser	p.P1418S	ENST00000256646	NM_024408.3	1418	Ccc/Tcc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156848916	156848916	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	113	468	0	ENST00000524377.1:c.1808C>T	p.Ser603Phe	p.S603F	ENST00000524377	NM_002529.3	603	tCc/tTc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162741840	162741840	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	76	268	0	ENST00000367921.3:c.1531C>T	p.Gln511Ter	p.Q511*	ENST00000367921	NM_006182.2	511	Cag/Tag																																																																														
RET	5979	MSKCC	GRCh37	10	43619213	43619213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	97	389	0	ENST00000355710.3:c.2896A>G	p.Thr966Ala	p.T966A	ENST00000355710	NM_020975.4	966	Acc/Gcc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94197330	94197330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	129	387	0	ENST00000323929.3:c.1174C>T	p.Pro392Ser	p.P392S	ENST00000323929	NM_005591.3	392	Cca/Tca																																																																														
YAP1	10413	MSKCC	GRCh37	11	102033294	102033294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	149	342	0	ENST00000282441.5:c.680C>T	p.Ser227Leu	p.S227L	ENST00000282441	NM_001130145.2	227	tCg/tTg																																																																														
CBL	867	MSKCC	GRCh37	11	119149235	119149235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	147	404	0	ENST00000264033.4:c.1243G>A	p.Gly415Ser	p.G415S	ENST00000264033	NM_005188.3	415	Ggc/Agc																																																																														
ETV6	2120	MSKCC	GRCh37	12	11905451	11905451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	92	283	0	ENST00000396373.4:c.101A>G	p.His34Arg	p.H34R	ENST00000396373	NM_001987.4	34	cAt/cGt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18466982	18466982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	151	275	0	ENST00000266497.5:c.1121G>A	p.Gly374Glu	p.G374E	ENST00000266497		374	gGa/gAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544088	18544088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	45	201	0	ENST00000266497.5:c.1905G>A	p.Met635Ile	p.M635I	ENST00000266497		635	atG/atA																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544120	18544120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	76	229	0	ENST00000266497.5:c.1937T>C	p.Leu646Pro	p.L646P	ENST00000266497		646	cTt/cCt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18573945	18573945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	63	268	0	ENST00000266497.5:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000266497		755	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658254	18658254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	126	414	0	ENST00000266497.5:c.3059C>T	p.Ala1020Val	p.A1020V	ENST00000266497		1020	gCt/gTt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691124	18691124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	91	385	0	ENST00000266497.5:c.3235G>A	p.Glu1079Lys	p.E1079K	ENST00000266497		1079	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691166	18691166	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	104	414	0	ENST00000266497.5:c.3277C>T	p.Gln1093Ter	p.Q1093*	ENST00000266497		1093	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424535	49424535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	92	482	0	ENST00000301067.7:c.13688C>T	p.Pro4563Leu	p.P4563L	ENST00000301067	NM_003482.3	4563	cCc/cTc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121426671	121426671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	106	405	0	ENST00000257555.6:c.362C>T	p.Ser121Phe	p.S121F	ENST00000257555		121	tCc/tTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133219468	133219468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	175	593	0	ENST00000320574.5:c.4666C>T	p.Arg1556Trp	p.R1556W	ENST00000320574	NM_006231.2	1556	Cgg/Tgg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636076	28636076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	128	397	1	ENST00000241453.7:c.296G>T	p.Gly99Val	p.G99V	ENST00000241453	NM_004119.2	99	gGg/gTg																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281129	49281129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	213	662	0	ENST00000282018.3:c.176C>T	p.Ser59Phe	p.S59F	ENST00000282018	NM_020377.2	59	tCc/tTc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066913	30066913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	93	310	1	ENST00000331968.5:c.2218C>T	p.Arg740Trp	p.R740W	ENST00000331968	NM_002742.2	740	Cgg/Tgg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108011	30108011	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	169	440	0	ENST00000331968.5:c.796A>T	p.Lys266Ter	p.K266*	ENST00000331968	NM_002742.2	266	Aaa/Taa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610632	81610632	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	72	248	0	ENST00000298171.2:c.2230A>T	p.Asn744Tyr	p.N744Y	ENST00000298171	NM_000369.2	744	Aac/Tac																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562404	95562404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	117	339	0	ENST00000343455.3:c.4853C>T	p.Ser1618Leu	p.S1618L	ENST00000343455	NM_177438.2	1618	tCa/tTa																																																																														
AKT1	207	MSKCC	GRCh37	14	105239605	105239605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	101	458	0	ENST00000349310.3:c.940G>A	p.Glu314Lys	p.E314K	ENST00000349310	NM_001014432.1	314	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423503	88423503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	120	459	1	ENST00000360948.2:c.2332G>A	p.Glu778Lys	p.E778K	ENST00000360948	NM_001012338.2	778	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472522	88472522	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55890138		P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	103	428	0	ENST00000360948.2:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000360948	NM_001012338.2	678	cGa/cAa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678460	88678460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	150	556	1	ENST00000360948.2:c.1076C>T	p.Ser359Phe	p.S359F	ENST00000360948	NM_001012338.2	359	tCc/tTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679756	88679756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	111	415	0	ENST00000360948.2:c.707C>T	p.Ser236Leu	p.S236L	ENST00000360948	NM_001012338.2	236	tCa/tTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690570	88690570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	84	291	0	ENST00000360948.2:c.460G>A	p.Glu154Lys	p.E154K	ENST00000360948	NM_001012338.2	154	Gaa/Aaa																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223532	2223532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	129	500	0	ENST00000326181.6:c.1063C>T	p.Arg355Trp	p.R355W	ENST00000326181	NM_032271.2	355	Cgg/Tgg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647806	3647806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	138	548	0	ENST00000294008.3:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000294008	NM_032444.2	453	cCa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857313	9857313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	83	327	0	ENST00000330684.3:c.4088C>T	p.Ser1363Phe	p.S1363F	ENST00000330684	NM_001134407.1	1363	tCc/tTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984848	9984848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	127	382	0	ENST00000330684.3:c.1117G>A	p.Glu373Lys	p.E373K	ENST00000330684	NM_001134407.1	373	Gaa/Aaa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56871573	56871574	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	97	372	0	ENST00000308159.5:c.1953_1954delinsTT	p.Gln652Ter	p.Q652*	ENST00000308159	NM_014669.4	651	ccCCag/ccTTag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829710	72829710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	156	574	2	ENST00000268489.5:c.6871C>A	p.Gln2291Lys	p.Q2291K	ENST00000268489	NM_006885.3	2291	Cag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350486	89350486	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	173	772	2	ENST00000301030.4:c.2464C>T	p.Gln822Ter	p.Q822*	ENST00000301030	NM_001256183.1	822	Cag/Tag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89352512	89352512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	132	439	0	ENST00000301030.4:c.827C>T	p.Ser276Phe	p.S276F	ENST00000301030	NM_001256183.1	276	tCc/tTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89352561	89352561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	100	351	0	ENST00000301030.4:c.778C>T	p.Pro260Ser	p.P260S	ENST00000301030	NM_001256183.1	260	Ccg/Tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	166	632	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979631	7979631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	72	353	0	ENST00000319144.4:c.1394G>A	p.Gly465Glu	p.G465E	ENST00000319144	NM_001139.2	465	gGg/gAg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682210	37682210	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	141	458	1	ENST00000447079.4:c.3401T>C	p.Met1134Thr	p.M1134T	ENST00000447079	NM_015083.1	1134	aTg/aCg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436077	56436078	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	101	343	0	ENST00000407977.2:c.1059_1060delinsAT	p.Pro354Ser	p.P354S	ENST00000407977		353	ctCCct/ctATct																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533763	63533763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	99	433	1	ENST00000307078.5:c.1391C>T	p.Ser464Phe	p.S464F	ENST00000307078	NM_004655.3	464	tCc/tTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170788	11170789	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	122	518	1	ENST00000344626.4:c.4836_4837delinsGT	p.Arg1613Trp	p.R1613W	ENST00000344626	NM_003072.3	1612	ggCCgg/ggGTgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302612	15302612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	143	720	0	ENST00000263388.2:c.746G>A	p.Gly249Glu	p.G249E	ENST00000263388	NM_000435.2	249	gGg/gAg																																																																														
AXL	558	MSKCC	GRCh37	19	41748841	41748841	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	168	604	0	ENST00000301178.4:c.1366G>T	p.Gly456Ter	p.G456*	ENST00000301178	NM_021913.4	456	Gga/Tga																																																																														
ALK	238	MSKCC	GRCh37	2	29420472	29420472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	118	399	0	ENST00000389048.3:c.4009G>A	p.Glu1337Lys	p.E1337K	ENST00000389048	NM_004304.4	1337	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	29462682	29462682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	175	532	0	ENST00000389048.3:c.2219G>A	p.Gly740Glu	p.G740E	ENST00000389048	NM_004304.4	740	gGa/gAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495290	212495290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	79	341	0	ENST00000342788.4:c.1976G>A	p.Gly659Asp	p.G659D	ENST00000342788	NM_005235.2	659	gGt/gAt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661899	227661899	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	147	602	0	ENST00000305123.5:c.1556A>G	p.Asn519Ser	p.N519S	ENST00000305123	NM_005544.2	519	aAt/aGt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076940	41076940	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	92	392	0	ENST00000373198.4:c.1480C>T	p.Gln494Ter	p.Q494*	ENST00000373198	NM_133170.3	494	Caa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306554	41306554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	81	467	0	ENST00000373198.4:c.1105G>C	p.Gly369Arg	p.G369R	ENST00000373198	NM_133170.3	369	Ggt/Cgt																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46262890	46262890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	92	359	0	ENST00000371998.3:c.1063C>T	p.Pro355Ser	p.P355S	ENST00000371998		355	Cct/Tct																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46275968	46275968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	97	423	0	ENST00000371998.3:c.3404T>C	p.Phe1135Ser	p.F1135S	ENST00000371998		1135	tTt/tCt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458223	12458223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	119	407	0	ENST00000287820.6:c.840G>A	p.Met280Ile	p.M280I	ENST00000287820	NM_015869.4	280	atG/atA																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799683	72799683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	132	425	1	ENST00000325599.8:c.1486C>T	p.Leu496Phe	p.L496F	ENST00000325599	NM_018130.2	496	Ctt/Ttt																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799851	72799851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	93	353	0	ENST00000325599.8:c.1318C>T	p.His440Tyr	p.H440Y	ENST00000325599	NM_018130.2	440	Cat/Tat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259167	89259167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	70	275	0	ENST00000336596.2:c.311G>A	p.Arg104Gln	p.R104Q	ENST00000336596	NM_005233.5	104	cGa/cAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445067	89445067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	73	265	0	ENST00000336596.2:c.1387C>T	p.Pro463Ser	p.P463S	ENST00000336596	NM_005233.5	463	Cct/Tct																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468357	89468357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	32	157	0	ENST00000336596.2:c.1891G>A	p.Glu631Lys	p.E631K	ENST00000336596	NM_005233.5	631	Gaa/Aaa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498379	89498379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	52	182	0	ENST00000336596.2:c.2351G>A	p.Gly784Glu	p.G784E	ENST00000336596	NM_005233.5	784	gGg/gAg																																																																														
ATR	545	MSKCC	GRCh37	3	142274940	142274940	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	110	387	0	ENST00000350721.4:c.2120T>C	p.Phe707Ser	p.F707S	ENST00000350721	NM_001184.3	707	tTt/tCt																																																																														
TP63	8626	MSKCC	GRCh37	3	189612029	189612029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	79	342	0	ENST00000264731.3:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000264731	NM_003722.4	594	cGa/cAa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902604	1902604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	124	511	0	ENST00000382891.5:c.223C>T	p.Pro75Ser	p.P75S	ENST00000382891	NM_133335.3	75	Cca/Tca																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750572	41750572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	92	405	0	ENST00000226382.2:c.56C>T	p.Ala19Val	p.A19V	ENST00000226382	NM_003924.3	19	gCt/gTt																																																																														
KIT	3815	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	218	306	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106156330	106156330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	56	277	0	ENST00000380013.4:c.1231C>T	p.Pro411Ser	p.P411S	ENST00000380013	NM_001127208.2	411	Cct/Tct																																																																														
TET2	54790	MSKCC	GRCh37	4	106193739	106193739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	59	157	0	ENST00000380013.4:c.4201G>A	p.Glu1401Lys	p.E1401K	ENST00000380013	NM_001127208.2	1401	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538991	187538991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	115	391	0	ENST00000441802.2:c.8749C>G	p.Arg2917Gly	p.R2917G	ENST00000441802	NM_005245.3	2917	Cga/Gga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628376	187628376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	167	576	0	ENST00000441802.2:c.2606C>T	p.Ser869Leu	p.S869L	ENST00000441802	NM_005245.3	869	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	70	183	0				ENST00000310581	NM_198253.2																																																																																
MAP3K1	4214	MSKCC	GRCh37	5	56160756	56160756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	61	224	0	ENST00000399503.3:c.1030C>T	p.Pro344Ser	p.P344S	ENST00000399503	NM_005921.1	344	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112177191	112177191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	83	260	0	ENST00000257430.4:c.5900C>T	p.Ser1967Phe	p.S1967F	ENST00000257430	NM_000038.5	1967	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112178691	112178691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	78	286	0	ENST00000257430.4:c.7400C>T	p.Pro2467Leu	p.P2467L	ENST00000257430	NM_000038.5	2467	cCa/cTa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520190	176520190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	192	708	0	ENST00000292408.4:c.1109T>C	p.Ile370Thr	p.I370T	ENST00000292408	NM_213647.1	370	aTc/aCc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056291	180056291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199942873		P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	143	677	0	ENST00000261937.6:c.953G>A	p.Arg318Gln	p.R318Q	ENST00000261937	NM_182925.4	318	cGa/cAa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681111	30681111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	60	237	0	ENST00000376406.3:c.608C>T	p.Pro203Leu	p.P203L	ENST00000376406	NM_014641.2	203	cCg/cTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956528	93956529	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	83	296	0	ENST00000369303.4:c.2707_2708delinsTT	p.Pro903Phe	p.P903F	ENST00000369303	NM_004440.3	903	CCc/TTc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536235	106536235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	106	363	0	ENST00000369096.4:c.202G>A	p.Asp68Asn	p.D68N	ENST00000369096	NM_001198.3	68	Gat/Aat																																																																														
FYN	2534	MSKCC	GRCh37	6	111995807	111995807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	105	293	1	ENST00000368678.4:c.1291G>A	p.Ala431Thr	p.A431T	ENST00000368678		431	Gcc/Acc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642495	117642495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs9489124		P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	186	539	2	ENST00000368508.3:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000368508	NM_002944.2	1902	Gaa/Aaa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528502	157528502	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	114	487	0	ENST00000346085.5:c.6227T>C	p.Leu2076Pro	p.L2076P	ENST00000346085	NM_020732.3	2076	cTg/cCg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528682	157528682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	130	436	1	ENST00000346085.5:c.6407C>T	p.Ser2136Leu	p.S2136L	ENST00000346085	NM_020732.3	2136	tCg/tTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2974109	2974109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	70	319	0	ENST00000396946.4:c.1496G>A	p.Arg499Lys	p.R499K	ENST00000396946	NM_032415.4	499	aGg/aAg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729442	41729442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	106	430	0	ENST00000242208.4:c.1087G>A	p.Gly363Arg	p.G363R	ENST00000242208	NM_002192.2	363	Ggg/Agg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729907	41729907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	124	476	0	ENST00000242208.4:c.622G>A	p.Glu208Lys	p.E208K	ENST00000242208	NM_002192.2	208	Gaa/Aaa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444390	50444390	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	53	274	0	ENST00000331340.3:c.320T>C	p.Val107Ala	p.V107A	ENST00000331340	NM_006060.4	107	gTt/gCt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241657	55241657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	111	510	1	ENST00000275493.2:c.2105C>T	p.Ala702Val	p.A702V	ENST00000275493	NM_005228.3	702	gCt/gTt																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38187387	38187387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	158	445	0	ENST00000317025.8:c.1090G>A	p.Glu364Lys	p.E364K	ENST00000317025	NM_023034.1	364	Gaa/Aaa																																																																														
LYN	4067	MSKCC	GRCh37	8	56882326	56882326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	146	518	0	ENST00000519728.1:c.1024C>T	p.Pro342Ser	p.P342S	ENST00000519728	NM_002350.3	342	Cca/Tca																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950458	68950458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	120	393	0	ENST00000288368.4:c.770C>T	p.Ser257Phe	p.S257F	ENST00000288368	NM_024870.2	257	tCt/tTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68981367	68981367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	60	226	0	ENST00000288368.4:c.1439C>T	p.Ser480Leu	p.S480L	ENST00000288368	NM_024870.2	480	tCa/tTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69009400	69009400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	74	322	0	ENST00000288368.4:c.2517G>A	p.Met839Ile	p.M839I	ENST00000288368	NM_024870.2	839	atG/atA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033209	69033209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	101	376	0	ENST00000288368.4:c.3649C>T	p.His1217Tyr	p.H1217Y	ENST00000288368	NM_024870.2	1217	Cat/Tat																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964333	70964333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	74	248	0	ENST00000276594.2:c.1695G>A	p.Met565Ile	p.M565I	ENST00000276594	NM_024504.3	565	atG/atA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521462	8521462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	181	466	1	ENST00000356435.5:c.776C>T	p.Ala259Val	p.A259V	ENST00000356435		259	gCc/gTc																																																																														
TEK	7010	MSKCC	GRCh37	9	27109591	27109591	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	183	508	0	ENST00000380036.4:c.3G>A	p.Met1?	p.M1?	ENST00000380036	NM_000459.3	1	atG/atA																																																																														
TEK	7010	MSKCC	GRCh37	9	27180309	27180309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	281	447	0	ENST00000380036.4:c.973C>T	p.Arg325Cys	p.R325C	ENST00000380036	NM_000459.3	325	Cgc/Tgc																																																																														
PAX5	5079	MSKCC	GRCh37	9	36923450	36923450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1304	194	603	0	ENST00000358127.4:c.812C>T	p.Ala271Val	p.A271V	ENST00000358127	NM_001280556.1	271	gCt/gTt																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80336343	80336343	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	79	315	0	ENST00000286548.4:c.976T>C	p.Ser326Pro	p.S326P	ENST00000286548	NM_002072.3	326	Tcc/Ccc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87342859	87342859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	97	346	0	ENST00000277120.3:c.1144C>T	p.Pro382Ser	p.P382S	ENST00000277120		382	Cct/Tct																																																																														
AR	367	MSKCC	GRCh37	X	66942767	66942767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	106	196	0	ENST00000374690.3:c.2548C>T	p.Pro850Ser	p.P850S	ENST00000374690	NM_000044.3	850	Ccc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0035243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	37	266	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0035243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	81	538	1	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114711296	114711296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	92	372	0	ENST00000543371.1:c.311C>T	p.Pro104Leu	p.P104L	ENST00000543371	NM_001198531.1	104	cCc/cTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41546137	41546137	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	19	356	2	ENST00000263253.7:c.2752C>T	p.Gln918Ter	p.Q918*	ENST00000263253	NM_001429.3	918	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175475	112175476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	30	257	0	ENST00000257430.4:c.4188dup	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1395	agt/agTt																																																																														
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0035265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	20	253	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
CDH1	999	MSKCC	GRCh37	16	68845698	68845698	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	36	229	0	ENST00000261769.5:c.944A>G	p.Asn315Ser	p.N315S	ENST00000261769	NM_004360.3	315	aAt/aGt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115111969	115111969	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	40	208	0	ENST00000257566.3:c.1770+1G>A		p.X590_splice	ENST00000257566	NM_016569.3	590																																																																															
CBFB	865	MSKCC	GRCh37	16	67100604	67100604	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	33	168	0	ENST00000412916.2:c.302del	p.Met101ArgfsTer3	p.M101Rfs*3	ENST00000412916		101	aTg/ag																																																																														
ERF	2077	MSKCC	GRCh37	19	42753323	42753323	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	118	504	0	ENST00000222329.4:c.941T>A	p.Leu314Gln	p.L314Q	ENST00000222329	NM_006494.2	314	cTg/cAg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111498	8111502	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGA	GAGGA	-			P-0035277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	254	513	0	ENST00000346208.3:c.985_989del	p.Arg329GlufsTer21	p.R329Efs*21	ENST00000346208		328	tgGAGGAgg/tggg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441259	52441259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	54	459	0	ENST00000460680.1:c.511G>T	p.Val171Phe	p.V171F	ENST00000460680	NM_004656.3	171	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	162	526	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14303198	14303198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	40	536	0	ENST00000256196.4:c.477G>T	p.Lys159Asn	p.K159N	ENST00000256196		159	aaG/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112175483	112175483	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	38	279	0	ENST00000257430.4:c.4192del	p.Ser1398ValfsTer17	p.S1398Vfs*17	ENST00000257430	NM_000038.5	1398	Agt/gt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075673	8075673	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	34	326	0	ENST00000377482.5:c.7A>T	p.Ile3Leu	p.I3L	ENST00000377482	NM_018948.3	3	Ata/Tta																																																																														
NF1	4763	MSKCC	GRCh37	17	29508443	29508443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	19	236	0	ENST00000358273.4:c.590C>T	p.Thr197Ile	p.T197I	ENST00000358273	NM_001042492.2	197	aCa/aTa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533458	63533458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	283	543	0	ENST00000307078.5:c.1696C>T	p.Pro566Ser	p.P566S	ENST00000307078	NM_004655.3	566	Ccc/Tcc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542897	187542898	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AGGATCA			P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	14	262	0	ENST00000441802.2:c.4836_4842dup	p.Val1615Ter	p.V1615*	ENST00000441802	NM_005245.3	1614	-/TGATCCT																																																																														
APC	324	MSKCC	GRCh37	5	112116598	112116598	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0035288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	20	234	0	ENST00000257430.4:c.643C>T	p.Gln215Ter	p.Q215*	ENST00000257430	NM_000038.5	215	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29490226	29490226	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0035297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	31	336	0	ENST00000358273.4:c.311T>G	p.Leu104Ter	p.L104*	ENST00000358273	NM_001042492.2	104	tTa/tGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857494	9857494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	63	386	1	ENST00000330684.3:c.3907G>A	p.Asp1303Asn	p.D1303N	ENST00000330684	NM_001134407.1	1303	Gac/Aac																																																																														
NF1	4763	MSKCC	GRCh37	17	29587505	29587505	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	21	442	0	ENST00000358273.4:c.4552del	p.Ile1518LeufsTer56	p.I1518Lfs*56	ENST00000358273	NM_001042492.2	1517	Aaa/aa																																																																														
STK11	6794	MSKCC	GRCh37	19	1207185	1207208	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGGCCAACGTGAAGAAGTAAGT	GGAGGCCAACGTGAAGAAGTAAGT	CTTCCCCA			P-0035297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	99	645	3	ENST00000326873.7:c.273_290+6delinsCTTCCCCA		p.X91_splice	ENST00000326873	NM_000455.4	91																																																																															
VHL	7428	MSKCC	GRCh37	3	10191493	10191493	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	123	416	0	ENST00000256474.2:c.486C>A	p.Cys162Ter	p.C162*	ENST00000256474	NM_000551.3	162	tgC/tgA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092739	27092740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	93	356	0	ENST00000324856.7:c.2765dup	p.Met923HisfsTer13	p.M923Hfs*13	ENST00000324856	NM_006015.4	920	-/G																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651382	52651382	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	103	582	0	ENST00000394830.3:c.1714G>T	p.Glu572Ter	p.E572*	ENST00000394830	NM_018313.4	572	Gag/Tag																																																																														
INSR	3643	MSKCC	GRCh37	19	7170714	7170714	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	179	696	0	ENST00000302850.5:c.1317G>A	p.Trp439Ter	p.W439*	ENST00000302850	NM_000208.2	439	tgG/tgA																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125836	47125836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	43	294	0	ENST00000409792.3:c.5434A>G	p.Lys1812Glu	p.K1812E	ENST00000409792	NM_014159.6	1812	Aaa/Gaa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6043336	6043336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	39	311	0	ENST00000265849.7:c.338C>T	p.Ser113Leu	p.S113L	ENST00000265849	NM_000535.5	113	tCa/tTa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	56	323	0	ENST00000345146.2:c.394C>A	p.Arg132Ser	p.R132S	ENST00000345146	NM_005896.2	132	Cgt/Agt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	12	422	1	ENST00000375759.3:c.9950delC	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1976665	1976665	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	126	648	0	ENST00000382891.5:c.3448A>G	p.Thr1150Ala	p.T1150A	ENST00000382891	NM_133335.3	1150	Acc/Gcc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	221	539	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	96	234	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	113	270	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	317	643	0	ENST00000324856.7:c.1650dupC	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660469	67660469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	262	443	0	ENST00000264010.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000264010	NM_006565.3	457	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107096	27107096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	235	523	0	ENST00000324856.7:c.6707G>C	p.Arg2236Pro	p.R2236P	ENST00000324856	NM_006015.4	2236	cGc/cCc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522353	157522353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	371	686	0	ENST00000346085.5:c.4625C>T	p.Thr1542Met	p.T1542M	ENST00000346085	NM_020732.3	1542	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434561	49434562	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	209	657	0	ENST00000301067.7:c.6991dup	p.Leu2331ProfsTer46	p.L2331Pfs*46	ENST00000301067	NM_003482.3	2331	ctg/cCtg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437224	52437224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	356	744	2	ENST00000460680.1:c.1820C>T	p.Thr607Met	p.T607M	ENST00000460680	NM_004656.3	607	aCg/aTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653846	89653846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	197	472	0	ENST00000371953.3:c.144C>A	p.Asn48Lys	p.N48K	ENST00000371953	NM_000314.4	48	aaC/aaA																																																																														
ATM	472	MSKCC	GRCh37	11	108173614	108173615	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	158	422	0	ENST00000278616.4:c.5358dup	p.Glu1787Ter	p.E1787*	ENST00000278616	NM_000051.3	1785	cct/ccTt																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30315354	30315354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	247	426	0	ENST00000322652.5:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000322652	NM_015355.2	347	Gaa/Aaa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41219670	41219670	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	321	585	0	ENST00000357654.3:c.5029A>C	p.Thr1677Pro	p.T1677P	ENST00000357654	NM_007294.3	1677	Act/Cct																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761459	59761459	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	269	492	2	ENST00000259008.2:c.2948T>A	p.Ile983Asn	p.I983N	ENST00000259008	NM_032043.2	983	aTt/aAt																																																																														
BCL6	604	MSKCC	GRCh37	3	187449609	187449609	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	216	475	0	ENST00000232014.4:c.271T>C	p.Tyr91His	p.Y91H	ENST00000232014	NM_001130845.1	91	Tac/Cac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542420	187542420	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	48	508	0	ENST00000441802.2:c.5320A>G	p.Ile1774Val	p.I1774V	ENST00000441802	NM_005245.3	1774	Att/Gtt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589633	67589663	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TTATATGAAGAATATACCCGCACATCCCAGG	TTATATGAAGAATATACCCGCACATCCCAGG	AAACTCACC			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	48	284	1	ENST00000274335.5:c.1396_1425+1delinsAAACTCACC		p.X466_splice	ENST00000274335		466																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157505492	157505492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	192	362	0	ENST00000346085.5:c.3473G>A	p.Arg1158His	p.R1158H	ENST00000346085	NM_020732.3	1158	cGt/cAt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523562	106523562	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	135	330	0	ENST00000359195.3:c.2714A>C	p.Glu905Ala	p.E905A	ENST00000359195	NM_002649.2	905	gAa/gCa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912193	127912193	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	149	326	0	ENST00000373547.4:c.677A>G	p.His226Arg	p.H226R	ENST00000373547	NM_002721.4	226	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	177	466	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	63	240	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	110	409	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604769	48604769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	78	396	0	ENST00000342988.3:c.1591C>T	p.Arg531Trp	p.R531W	ENST00000342988	NM_005359.5	531	Cgg/Tgg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533883	63533884	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	97	462	0	ENST00000307078.5:c.1270_1271del	p.Ser424ProfsTer37	p.S424Pfs*37	ENST00000307078	NM_004655.3	424	TCc/c																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412647	63412648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	209	584	0	ENST00000330258.3:c.519dupT	p.Ser174Ter	p.S174*	ENST00000330258	NM_152424.3	173	-/T																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14024724	14024724	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	111	453	1	ENST00000311895.7:c.954del	p.Ala319LeufsTer19	p.A319Lfs*19	ENST00000311895	NM_005236.2	317	gAa/ga																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349775	89349775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	334	717	0	ENST00000301030.4:c.3175A>G	p.Lys1059Glu	p.K1059E	ENST00000301030	NM_001256183.1	1059	Aaa/Gaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604797	48604797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	72	351	0	ENST00000342988.3:c.1619T>C	p.Leu540Pro	p.L540P	ENST00000342988	NM_005359.5	540	cTt/cCt																																																																														
BBC3	27113	MSKCC	GRCh37	19	47724984	47724984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	139	661	1	ENST00000449228.1:c.760G>A	p.Ala254Thr	p.A254T	ENST00000449228	NM_001127240.2	254	Gcg/Acg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591117	+	inframe_deletion	In_Frame_Del	DEL	AACAGCATTAAACCAGACCTT	AACAGCATTAAACCAGACCTT	-			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	124	241	0	ENST00000274335.5:c.1691_1711del	p.Asn564_Leu570del	p.N564_L570del	ENST00000274335		564	AACAGCATTAAACCAGACCTT/-																																																																														
APC	324	MSKCC	GRCh37	5	112175554	112175555	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	144	332	1	ENST00000257430.4:c.4263_4264delinsCT	p.Asp1422Tyr	p.D1422Y	ENST00000257430	NM_000038.5	1421	agTGat/agCTat																																																																														
APC	324	MSKCC	GRCh37	5	112175561	112175570	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGATAGCC	CCAGATAGCC	-			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	142	325	0	ENST00000257430.4:c.4271_4280del	p.Pro1424LeufsTer46	p.P1424Lfs*46	ENST00000257430	NM_000038.5	1424	CCAGATAGCCct/ct																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923090	39923090	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	134	703	0	ENST00000378444.4:c.3618A>T	p.Lys1206Asn	p.K1206N	ENST00000378444	NM_001123385.1	1206	aaA/aaT																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0035334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	259	451	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
MGA	23269	MSKCC	GRCh37	15	42003250	42003250	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	223	539	0	ENST00000219905.7:c.2787C>G	p.Tyr929Ter	p.Y929*	ENST00000219905	NM_001164273.1	929	taC/taG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	302	434	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	270	332	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	103	489	4	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022403	31022425	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACTGCCATAGAGAGGCGGC	CACCACTGCCATAGAGAGGCGGC	-			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	129	317	0	ENST00000375687.4:c.1900_1922delAGAGAGGCGGCCACCACTGCCAT	p.Glu635ArgfsTer15	p.E635Rfs*15	ENST00000375687	NM_015338.5	630	CACCACTGCCATAGAGAGGCGGCc/c																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	249	552	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	466	787	0	ENST00000269305.4:c.826G>C	p.Ala276Pro	p.A276P	ENST00000269305	NM_001126112.2	276	Gcc/Ccc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729888	41729888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	89	593	0	ENST00000242208.4:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000242208	NM_002192.2	214	cGg/cAg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249393	110249393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1322	251	944	1	ENST00000374672.4:c.1180G>A	p.Ala394Thr	p.A394T	ENST00000374672	NM_004235.4	394	Gcc/Acc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738280	145738280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1584	161	914	0	ENST00000428558.2:c.2705G>A	p.Arg902Gln	p.R902Q	ENST00000428558	NM_004260.3	902	cGg/cAg																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225789	26225789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	43	383	0	ENST00000360408.1:c.407C>T	p.Ala136Val	p.A136V	ENST00000360408	NM_003532.2	136	gCg/gTg																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108698	8108698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	263	558	0	ENST00000585124.1:c.697A>G	p.Met233Val	p.M233V	ENST00000585124	NM_004217.3	233	Atg/Gtg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137321073	137321073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	36	526	0	ENST00000481739.1:c.1030G>A	p.Ala344Thr	p.A344T	ENST00000481739	NM_002957.4	344	Gcc/Acc																																																																														
BARD1	580	MSKCC	GRCh37	2	215645336	215645336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	50	622	0	ENST00000260947.4:c.1262C>T	p.Ala421Val	p.A421V	ENST00000260947	NM_000465.2	421	gCt/gTt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509084	66509085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	13	335	0	ENST00000273854.3:c.242dupA	p.Asn81LysfsTer8	p.N81Kfs*8	ENST00000273854	NM_004439.5	81	aat/aaAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827419	72827419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	433	852	0	ENST00000268489.5:c.9162C>A	p.Asp3054Glu	p.D3054E	ENST00000268489	NM_006885.3	3054	gaC/gaA																																																																														
BRAF	673	MSKCC	GRCh37	7	140476811	140476811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	78	601	0	ENST00000288602.6:c.1595G>A	p.Cys532Tyr	p.C532Y	ENST00000288602	NM_004333.4	532	tGt/tAt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912061	50912061	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149569984		P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	83	793	0	ENST00000440232.2:c.1795G>A	p.Ala599Thr	p.A599T	ENST00000440232	NM_002691.3	599	Gcc/Acc																																																																														
EP300	2033	MSKCC	GRCh37	22	41572357	41572357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	75	782	2	ENST00000263253.7:c.4886C>T	p.Ala1629Val	p.A1629V	ENST00000263253	NM_001429.3	1629	gCg/gTg																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175957444	175957444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201905141		P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	263	506	0	ENST00000367669.3:c.1952A>G	p.Asn651Ser	p.N651S	ENST00000367669	NM_022457.5	651	aAt/aGt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683168	88683168	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	27	467	0	ENST00000372037.3:c.1378A>G	p.Met460Val	p.M460V	ENST00000372037	NM_004329.2	460	Atg/Gtg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444702	49444702	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	518	816	1	ENST00000301067.7:c.2764del	p.Glu922SerfsTer8	p.E922Sfs*8	ENST00000301067	NM_003482.3	922	Gag/ag																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536623	120536623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	378	727	0	ENST00000229340.5:c.469G>T	p.Val157Leu	p.V157L	ENST00000229340	NM_006861.6	157	Gtg/Ttg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435001	110435001	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	411	649	0	ENST00000375856.3:c.3400A>T	p.Lys1134Ter	p.K1134*	ENST00000375856	NM_003749.2	1134	Aag/Tag																																																																														
CYLD	1540	MSKCC	GRCh37	16	50815298	50815298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	101	742	0	ENST00000398568.2:c.1651C>G	p.Gln551Glu	p.Q551E	ENST00000398568	NM_001042412.1	551	Cag/Gag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991352	72991352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	84	684	0	ENST00000268489.5:c.2693C>A	p.Pro898His	p.P898H	ENST00000268489	NM_006885.3	898	cCc/cAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602645	10602645	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	448	726	0	ENST00000171111.5:c.933C>G	p.His311Gln	p.H311Q	ENST00000171111	NM_203500.1	311	caC/caG																																																																														
XPO1	7514	MSKCC	GRCh37	2	61753559	61753559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	310	345	0	ENST00000401558.2:c.224C>T	p.Thr75Met	p.T75M	ENST00000401558	NM_003400.3	75	aCg/aTg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209108290	209108290	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	70	569	0	ENST00000345146.2:c.559A>G	p.Lys187Glu	p.K187E	ENST00000345146	NM_005896.2	187	Aag/Gag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37048481	37048481	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	259	350	0	ENST00000231790.2:c.381-1G>C		p.X127_splice	ENST00000231790	NM_000249.3	127																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31526376	31526376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	553	1023	2	ENST00000344624.3:c.664C>T	p.Pro222Ser	p.P222S	ENST00000344624		222	Cca/Tca																																																																														
PLK2	10769	MSKCC	GRCh37	5	57755686	57755686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	474	676	0	ENST00000274289.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000274289	NM_006622.3	34	cGg/cCg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131976493	131976493	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	334	569	0	ENST00000265335.6:c.3748G>C	p.Val1250Leu	p.V1250L	ENST00000265335		1250	Gtt/Ctt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934046	39934046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	143	405	0	ENST00000378444.4:c.553A>G	p.Ser185Gly	p.S185G	ENST00000378444	NM_001123385.1	185	Agt/Ggt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	114	687	1	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245141	46245141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	22	529	0	ENST00000334344.6:c.3235C>T	p.Leu1079Phe	p.L1079F	ENST00000334344	NM_152641.2	1079	Ctc/Ttc																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374828	149374828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	71	349	0	ENST00000360632.3:c.266C>G	p.Ser89Trp	p.S89W	ENST00000360632	NM_015472.4	89	tCg/tGg																																																																														
EP300	2033	MSKCC	GRCh37	22	41489043	41489043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	96	493	0	ENST00000263253.7:c.35C>T	p.Ser12Leu	p.S12L	ENST00000263253	NM_001429.3	12	tCa/tTa																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349308	11349308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	36	471	1	ENST00000332029.2:c.28G>T	p.Asp10Tyr	p.D10Y	ENST00000332029	NM_003745.1	10	Gac/Tac																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641370	23641373	+	frameshift_variant	Frame_Shift_Del	DEL	ATGG	ATGG	-			P-0035378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	119	879	0	ENST00000261584.4:c.2102_2105del	p.Ser701TyrfsTer7	p.S701Yfs*7	ENST00000261584	NM_024675.3	701	tCCATa/ta																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16012162	16012162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	66	622	0	ENST00000268712.3:c.2120C>T	p.Ser707Phe	p.S707F	ENST00000268712	NM_006311.3	707	tCt/tTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29654631	29654631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	33	353	0	ENST00000358273.4:c.5383G>C	p.Asp1795His	p.D1795H	ENST00000358273	NM_001042492.2	1795	Gat/Cat																																																																														
STAT3	6774	MSKCC	GRCh37	17	40500404	40500405	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0035378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	104	456	0	ENST00000264657.5:c.128+2dup		p.X43_splice	ENST00000264657	NM_139276.2	43																																																																															
SPOP	8405	MSKCC	GRCh37	17	47685262	47685262	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	25	505	0	ENST00000347630.2:c.688G>T	p.Glu230Ter	p.E230*	ENST00000347630	NM_001007230.1	230	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922365	178922365	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	47	422	0	ENST00000263967.3:c.1134T>G	p.Cys378Trp	p.C378W	ENST00000263967	NM_006218.2	378	tgT/tgG																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671263	30671263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	107	679	1	ENST00000376406.3:c.5614G>A	p.Glu1872Lys	p.E1872K	ENST00000376406	NM_014641.2	1872	Gag/Aag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004410	150004410	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	103	661	0	ENST00000253339.5:c.1815del	p.Glu606LysfsTer42	p.E606Kfs*42	ENST00000253339		605	aaA/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	394	605	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100337	8100337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	336	642	0	ENST00000346208.3:c.311G>A	p.Gly104Asp	p.G104D	ENST00000346208		104	gGc/gAc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607738	46607768	+	frameshift_variant	Frame_Shift_Del	DEL	CCACCATTACATTTTGGGCCCACAAAGTGGG	CCACCATTACATTTTGGGCCCACAAAGTGGG	-			P-0035382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	277	656	0	ENST00000263734.3:c.1929_1959del	p.Pro644SerfsTer42	p.P644Sfs*42	ENST00000263734	NM_001430.4	643	CCACCATTACATTTTGGGCCCACAAAGTGGGcc/cc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956995	2957009	+	inframe_deletion	In_Frame_Del	DEL	GCGCTTCTTCTGGCT	GCGCTTCTTCTGGCT	-			P-0035382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	208	496	2	ENST00000396946.4:c.2618_2632del	p.Gln873_Ala877del	p.Q873_A877del	ENST00000396946	NM_032415.4	873	cAGCCAGAAGAAGCGCtt/ctt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098906	47098906	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	238	693	0	ENST00000409792.3:c.6368del	p.Lys2123SerfsTer24	p.K2123Sfs*24	ENST00000409792	NM_014159.6	2123	aAg/ag																																																																														
STK11	6794	MSKCC	GRCh37	19	1218417	1218417	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0035387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	68	466	0	ENST00000326873.7:c.292G>T	p.Glu98Ter	p.E98*	ENST00000326873	NM_000455.4	98	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	136	541	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610288	10610288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	260	741	0	ENST00000171111.5:c.422A>G	p.Tyr141Cys	p.Y141C	ENST00000171111	NM_203500.1	141	tAc/tGc																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439649	51439649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	80	404	0	ENST00000262662.1:c.214G>T	p.Ala72Ser	p.A72S	ENST00000262662		72	Gct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446821	49446821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	94	516	1	ENST00000301067.7:c.989C>T	p.Ser330Leu	p.S330L	ENST00000301067	NM_003482.3	330	tCa/tTa																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872499	35872499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	73	504	0	ENST00000216797.5:c.404G>C	p.Cys135Ser	p.C135S	ENST00000216797	NM_020529.2	135	tGt/tCt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991794	72991794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	46	541	0	ENST00000268489.5:c.2251C>T	p.Leu751Phe	p.L751F	ENST00000268489	NM_006885.3	751	Ctc/Ttc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119086	70119086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	49	332	0	ENST00000245479.2:c.658G>A	p.Glu220Lys	p.E220K	ENST00000245479	NM_000346.3	220	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916882	178916882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	137	573	0	ENST00000263967.3:c.269G>T	p.Cys90Phe	p.C90F	ENST00000263967	NM_006218.2	90	tGt/tTt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86682643	86682643	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	48	332	1	ENST00000274376.6:c.2848G>A	p.Glu950Lys	p.E950K	ENST00000274376	NM_002890.2	950	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	21	272	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	321	675	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911514	131911514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143802516		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	180	399	0	ENST00000265335.6:c.259C>T	p.Arg87Cys	p.R87C	ENST00000265335		87	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	57	496	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	131	311	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	178	245	0	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	192	510	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572534	95572534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	110	276	0	ENST00000343455.3:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000343455	NM_177438.2	944	cGa/cAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237633	16237633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	190	412	0	ENST00000375759.3:c.1080G>T	p.Lys360Asn	p.K360N	ENST00000375759	NM_015001.2	360	aaG/aaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117706936	117706936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	167	494	0	ENST00000368508.3:c.2214G>T	p.Glu738Asp	p.E738D	ENST00000368508	NM_002944.2	738	gaG/gaT																																																																														
KDM5A	5927	MSKCC	GRCh37	12	441077	441077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	172	293	0	ENST00000399788.2:c.1681G>A	p.Glu561Lys	p.E561K	ENST00000399788	NM_001042603.1	561	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65335079	65335079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	138	481	1	ENST00000342505.4:c.562G>A	p.Glu188Lys	p.E188K	ENST00000342505	NM_002227.2	188	Gag/Aag																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176118155	176118155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	106	292	0	ENST00000367669.3:c.818G>T	p.Arg273Ile	p.R273I	ENST00000367669	NM_022457.5	273	aGa/aTa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25468901	25468901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	207	602	0	ENST00000264709.3:c.1462C>T	p.Arg488Trp	p.R488W	ENST00000264709	NM_175629.2	488	Cgg/Tgg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	46	456	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	80	467	0	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	231	490	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32899248	32899248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	136	295	0	ENST00000380152.3:c.352C>T	p.Arg118Cys	p.R118C	ENST00000380152		118	Cgc/Tgc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98232138	98232138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	94	315	0	ENST00000331920.6:c.1804C>T	p.Arg602Ter	p.R602*	ENST00000331920	NM_000264.3	602	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108216568	108216568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	151	408	0	ENST00000278616.4:c.8517C>A	p.Phe2839Leu	p.F2839L	ENST00000278616	NM_000051.3	2839	ttC/ttA																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166192	118166192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	138	321	1	ENST00000369448.3:c.702G>T	p.Lys234Asn	p.K234N	ENST00000369448	NM_017709.3	234	aaG/aaT																																																																														
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	33	419	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495372	149495372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146614144		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	153	610	2	ENST00000261799.4:c.3275C>T	p.Ser1092Leu	p.S1092L	ENST00000261799	NM_002609.3	1092	tCg/tTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280068	66280068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	26	338	0	ENST00000273854.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000273854	NM_004439.5	541	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	88	210	0	ENST00000371953.3:c.176C>A	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tAa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57480495	57480495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	75	257	0	ENST00000371085.3:c.490G>A	p.Glu164Lys	p.E164K	ENST00000371085	NM_000516.4	164	Gaa/Aaa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52724361	52724361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	161	397	0	ENST00000322088.6:c.1493G>A	p.Arg498His	p.R498H	ENST00000322088	NM_014225.5	498	cGc/cAc																																																																														
MPL	4352	MSKCC	GRCh37	1	43812205	43812205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	191	476	0	ENST00000372470.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000372470	NM_005373.2	357	cGa/cAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911354	32911354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	155	349	0	ENST00000380152.3:c.2862G>T	p.Glu954Asp	p.E954D	ENST00000380152		954	gaG/gaT																																																																														
CIC	23152	MSKCC	GRCh37	19	42797910	42797910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	280	708	2	ENST00000575354.2:c.3962G>A	p.Arg1321His	p.R1321H	ENST00000575354	NM_015125.3	1321	cGc/cAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576178	88576178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	40	519	1	ENST00000360948.2:c.1495G>A	p.Asp499Asn	p.D499N	ENST00000360948	NM_001012338.2	499	Gac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827580	72827580	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	37	682	0	ENST00000268489.5:c.9001G>T	p.Glu3001Ter	p.E3001*	ENST00000268489	NM_006885.3	3001	Gaa/Taa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3788637	3788637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	146	284	0	ENST00000262367.5:c.4317C>A	p.Phe1439Leu	p.F1439L	ENST00000262367	NM_004380.2	1439	ttC/ttA																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81902892	81902892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	23	468	0	ENST00000359376.3:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000359376	NM_002661.3	185	Gat/Tat																																																																														
TOP1	7150	MSKCC	GRCh37	20	39713150	39713150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	95	205	0	ENST00000361337.2:c.556C>T	p.Pro186Ser	p.P186S	ENST00000361337	NM_003286.2	186	Cct/Tct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164118	47164118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	143	335	0	ENST00000409792.3:c.2008G>T	p.Glu670Ter	p.E670*	ENST00000409792	NM_014159.6	670	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32920979	32920979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	153	358	1	ENST00000380152.3:c.6953G>A	p.Arg2318Gln	p.R2318Q	ENST00000380152		2318	cGa/cAa																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872795	136872795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	82	361	0	ENST00000241393.3:c.703C>T	p.Arg235Cys	p.R235C	ENST00000241393	NM_003467.2	235	Cgc/Tgc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871196	35871196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	94	286	1	ENST00000303115.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000303115	NM_002185.3	140	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112178781	112178781	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141010008		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	150	388	1	ENST00000257430.4:c.7490C>T	p.Ser2497Leu	p.S2497L	ENST00000257430	NM_000038.5	2497	tCg/tTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956771	68956771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	114	621	1	ENST00000288368.4:c.889C>T	p.Arg297Cys	p.R297C	ENST00000288368	NM_024870.2	297	Cgt/Tgt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30108091	30108091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80271647		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	92	507	2	ENST00000331968.5:c.716C>T	p.Ser239Leu	p.S239L	ENST00000331968	NM_002742.2	239	tCg/tTg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199821	138199821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	154	408	0	ENST00000237289.4:c.1239G>T	p.Lys413Asn	p.K413N	ENST00000237289	NM_001270507.1	413	aaG/aaT																																																																														
SYK	6850	MSKCC	GRCh37	9	93624558	93624558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	79	341	0	ENST00000375746.1:c.649C>T	p.Arg217Cys	p.R217C	ENST00000375746	NM_001174167.1	217	Cgc/Tgc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58711261	58711261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	248	528	0	ENST00000305921.3:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000305921	NM_003620.3	250	cGa/cAa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409422	80409422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	126	342	1	ENST00000286548.4:c.692C>T	p.Ala231Val	p.A231V	ENST00000286548	NM_002072.3	231	gCg/gTg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515335	103515335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	68	259	0	ENST00000355739.4:c.1836G>T	p.Glu612Asp	p.E612D	ENST00000355739	NM_000123.3	612	gaG/gaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638731	176638731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151165525		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	229	628	1	ENST00000439151.2:c.3331G>A	p.Asp1111Asn	p.D1111N	ENST00000439151	NM_022455.4	1111	Gat/Aat																																																																														
MET	4233	MSKCC	GRCh37	7	116395478	116395478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45602940		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	98	382	0	ENST00000397752.3:c.1771C>T	p.Arg591Trp	p.R591W	ENST00000397752	NM_000245.2	591	Cgg/Tgg																																																																														
MET	4233	MSKCC	GRCh37	7	116395569	116395569	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	108	338	0	ENST00000397752.3:c.1862C>T	p.Thr621Ile	p.T621I	ENST00000397752	NM_000245.2	621	aCa/aTa																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751213	57751213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	143	299	0	ENST00000274289.3:c.1654C>T	p.Gln552Ter	p.Q552*	ENST00000274289	NM_006622.3	552	Caa/Taa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62319939	62319939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	215	580	0	ENST00000508582.2:c.1853G>A	p.Ser618Asn	p.S618N	ENST00000508582		618	aGc/aAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356412	66356412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	108	308	0	ENST00000273854.3:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000273854	NM_004439.5	362	cGg/cAg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59857686	59857686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	132	356	1	ENST00000259008.2:c.1871C>T	p.Ser624Leu	p.S624L	ENST00000259008	NM_032043.2	624	tCg/tTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48923133	48923133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	132	273	0	ENST00000267163.4:c.581C>A	p.Ser194Tyr	p.S194Y	ENST00000267163	NM_000321.2	194	tCt/tAt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56801452	56801452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	26	402	1	ENST00000337432.4:c.956G>A	p.Arg319Gln	p.R319Q	ENST00000337432	NM_058216.2	319	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178943755	178943755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200671228		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	127	273	0	ENST00000263967.3:c.2422C>T	p.Arg808Trp	p.R808W	ENST00000263967	NM_006218.2	808	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105688	27105688	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	126	293	0	ENST00000324856.7:c.5299G>T	p.Glu1767Ter	p.E1767*	ENST00000324856	NM_006015.4	1767	Gaa/Taa																																																																														
SESN3	143686	MSKCC	GRCh37	11	94906445	94906445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	150	464	0	ENST00000536441.1:c.1453C>T	p.Arg485Cys	p.R485C	ENST00000536441	NM_144665.3	485	Cgt/Tgt																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40447715	40447715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	160	591	0	ENST00000345506.4:c.454C>T	p.Arg152Ter	p.R152*	ENST00000345506	NM_003152.3	152	Cga/Tga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865216	57865216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	185	740	0	ENST00000228682.2:c.2693T>C	p.Val898Ala	p.V898A	ENST00000228682	NM_005269.2	898	gTg/gCg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707863	43707863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	264	697	0	ENST00000382044.4:c.5018G>T	p.Arg1673Ile	p.R1673I	ENST00000382044	NM_001141980.1	1673	aGa/aTa																																																																														
STK40	83931	MSKCC	GRCh37	1	36808981	36808981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	212	603	2	ENST00000373129.3:c.1073C>T	p.Ala358Val	p.A358V	ENST00000373129	NM_032017.1	358	gCg/gTg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518653	103518653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	75	227	0	ENST00000355739.4:c.2241G>T	p.Gln747His	p.Q747H	ENST00000355739	NM_000123.3	747	caG/caT																																																																														
CDH1	999	MSKCC	GRCh37	16	68863690	68863690	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	119	339	0	ENST00000261769.5:c.2429T>G	p.Phe810Cys	p.F810C	ENST00000261769	NM_004360.3	810	tTt/tGt																																																																														
ATR	545	MSKCC	GRCh37	3	142238616	142238616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	107	196	0	ENST00000350721.4:c.4277C>A	p.Ser1426Tyr	p.S1426Y	ENST00000350721	NM_001184.3	1426	tCt/tAt																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519596	137519596	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	34	407	0	ENST00000367739.4:c.1042G>T	p.Glu348Ter	p.E348*	ENST00000367739	NM_000416.2	348	Gaa/Taa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30321667	30321667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	220	568	2	ENST00000322652.5:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000322652	NM_015355.2	508	Cgc/Tgc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383182	42383182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	181	552	1	ENST00000221972.3:c.202C>T	p.Arg68Cys	p.R68C	ENST00000221972	NM_021601.3	68	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510219	187510219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	87	444	0	ENST00000441802.2:c.13294G>A	p.Glu4432Lys	p.E4432K	ENST00000441802	NM_005245.3	4432	Gaa/Aaa																																																																														
VHL	7428	MSKCC	GRCh37	3	10191635	10191635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	62	471	0	ENST00000256474.2:c.628C>T	p.Arg210Trp	p.R210W	ENST00000256474	NM_000551.3	210	Cgg/Tgg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190738302	190738302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	120	307	0	ENST00000441310.2:c.2554G>A	p.Glu852Lys	p.E852K	ENST00000441310	NM_000534.4	852	Gaa/Aaa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573220	64573220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	259	666	0	ENST00000337652.1:c.1087G>A	p.Glu363Lys	p.E363K	ENST00000337652	NM_130803.2	363	Gag/Aag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522657	67522657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	143	283	0	ENST00000274335.5:c.154G>T	p.Glu52Ter	p.E52*	ENST00000274335		52	Gaa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118391571	118391571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	143	317	1	ENST00000534358.1:c.11484G>T	p.Lys3828Asn	p.K3828N	ENST00000534358	NM_005933.3	3828	aaG/aaT																																																																														
CDC42	998	MSKCC	GRCh37	1	22417932	22417932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	97	228	0	ENST00000344548.3:c.498G>T	p.Lys166Asn	p.K166N	ENST00000344548	NM_001039802.1	166	aaG/aaT																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70982004	70982004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	156	821	1	ENST00000276594.2:c.92C>T	p.Thr31Met	p.T31M	ENST00000276594	NM_024504.3	31	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100824	27100824	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	104	359	0	ENST00000324856.7:c.4106A>G	p.Tyr1369Cys	p.Y1369C	ENST00000324856	NM_006015.4	1369	tAc/tGc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599185	28599185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	236	832	2	ENST00000253063.3:c.631G>A	p.Val211Met	p.V211M	ENST00000253063	NM_031459.4	211	Gtg/Atg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65309798	65309798	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	150	556	0	ENST00000342505.4:c.2352G>A	p.Trp784Ter	p.W784*	ENST00000342505	NM_002227.2	784	tgG/tgA																																																																														
JAK1	3716	MSKCC	GRCh37	1	65321352	65321352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	161	549	0	ENST00000342505.4:c.1488G>T	p.Lys496Asn	p.K496N	ENST00000342505	NM_002227.2	496	aaG/aaT																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332642	65332642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	116	330	0	ENST00000342505.4:c.897G>T	p.Met299Ile	p.M299I	ENST00000342505	NM_002227.2	299	atG/atT																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115280642	115280642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	198	604	0	ENST00000438362.2:c.389C>T	p.Ala130Val	p.A130V	ENST00000438362	NM_001242891.1	130	gCt/gTt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510239	120510239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	162	357	0	ENST00000256646.2:c.1270A>G	p.Ser424Gly	p.S424G	ENST00000256646	NM_024408.3	424	Agc/Ggc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162737018	162737018	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	147	407	1	ENST00000367921.3:c.1163-1G>T		p.X388_splice	ENST00000367921	NM_006182.2	388																																																																															
DDR2	4921	MSKCC	GRCh37	1	162737079	162737079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	187	551	0	ENST00000367921.3:c.1223T>C	p.Ile408Thr	p.I408T	ENST00000367921	NM_006182.2	408	aTc/aCc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745465	162745465	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	145	331	0	ENST00000367921.3:c.1880A>T	p.Lys627Met	p.K627M	ENST00000367921	NM_006182.2	627	aAg/aTg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981197	201981197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	325	778	0	ENST00000359651.3:c.276C>A	p.Phe92Leu	p.F92L	ENST00000359651		92	ttC/ttA																																																																														
MDM4	4194	MSKCC	GRCh37	1	204513804	204513804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	84	196	0	ENST00000367182.3:c.814G>T	p.Asp272Tyr	p.D272Y	ENST00000367182	NM_001278516.1	272	Gac/Tac																																																																														
TET1	80312	MSKCC	GRCh37	10	70333547	70333547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	140	485	0	ENST00000373644.4:c.1452G>T	p.Glu484Asp	p.E484D	ENST00000373644	NM_030625.2	484	gaG/gaT																																																																														
TET1	80312	MSKCC	GRCh37	10	70404659	70404659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	187	394	0	ENST00000373644.4:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000373644	NM_030625.2	725	Gat/Aat																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123260350	123260350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	129	507	0	ENST00000358487.5:c.1551G>T	p.Lys517Asn	p.K517N	ENST00000358487	NM_000141.4	517	aaG/aaT																																																																														
WT1	7490	MSKCC	GRCh37	11	32414253	32414253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	50	433	0	ENST00000332351.3:c.1298C>A	p.Ser433Tyr	p.S433Y	ENST00000332351	NM_024426.4	433	tCt/tAt																																																																														
CCND1	595	MSKCC	GRCh37	11	69465963	69465963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	165	586	0	ENST00000227507.2:c.801C>A	p.Asp267Glu	p.D267E	ENST00000227507	NM_053056.2	267	gaC/gaA																																																																														
SESN3	143686	MSKCC	GRCh37	11	94918635	94918635	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	114	347	0	ENST00000536441.1:c.547A>C	p.Asn183His	p.N183H	ENST00000536441	NM_144665.3	183	Aat/Cat																																																																														
PGR	5241	MSKCC	GRCh37	11	100998977	100998977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	22	486	0	ENST00000325455.5:c.825C>A	p.Phe275Leu	p.F275L	ENST00000325455	NM_001202474.3	275	ttC/ttA																																																																														
ATM	472	MSKCC	GRCh37	11	108106420	108106420	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	80	165	0	ENST00000278616.4:c.355G>T	p.Glu119Ter	p.E119*	ENST00000278616	NM_000051.3	119	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108199917	108199917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	15	156	0	ENST00000278616.4:c.7259C>T	p.Ala2420Val	p.A2420V	ENST00000278616	NM_000051.3	2420	gCc/gTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342500	118342500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	71	155	0	ENST00000534358.1:c.626A>G	p.Lys209Arg	p.K209R	ENST00000534358	NM_005933.3	209	aAg/aGg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374685	118374685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	118	356	0	ENST00000534358.1:c.8078C>A	p.Ser2693Tyr	p.S2693Y	ENST00000534358	NM_005933.3	2693	tCt/tAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377244	118377244	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	116	345	0	ENST00000534358.1:c.10637T>C	p.Phe3546Ser	p.F3546S	ENST00000534358	NM_005933.3	3546	tTt/tCt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497683	125497683	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	183	456	0	ENST00000428830.2:c.247T>G	p.Phe83Val	p.F83V	ENST00000428830	NM_001114121.2	83	Ttt/Gtt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	430160	430160	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	76	253	0	ENST00000399788.2:c.2541+1G>A		p.X847_splice	ENST00000399788	NM_001042603.1	847																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18446939	18446939	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	72	344	0	ENST00000266497.5:c.1024T>A	p.Phe342Ile	p.F342I	ENST00000266497		342	Ttt/Att																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552725	18552725	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	122	522	0	ENST00000266497.5:c.2136T>G	p.Ile712Met	p.I712M	ENST00000266497		712	atT/atG																																																																														
RECQL	5965	MSKCC	GRCh37	12	21639514	21639514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	55	208	0	ENST00000421138.2:c.400A>G	p.Thr134Ala	p.T134A	ENST00000421138		134	Aca/Gca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231397	46231397	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	155	422	0	ENST00000334344.6:c.1237C>G	p.Leu413Val	p.L413V	ENST00000334344	NM_152641.2	413	Ctg/Gtg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246660	46246660	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	67	143	0	ENST00000334344.6:c.4754T>C	p.Val1585Ala	p.V1585A	ENST00000334344	NM_152641.2	1585	gTa/gCa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445802	49445802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	393	949	0	ENST00000301067.7:c.1664C>T	p.Ser555Phe	p.S555F	ENST00000301067	NM_003482.3	555	tCc/tTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495835	56495835	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140679673		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	107	292	0	ENST00000267101.3:c.4025C>T	p.Thr1342Met	p.T1342M	ENST00000267101	NM_001982.3	1342	aCg/aTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865735	57865735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	232	622	1	ENST00000228682.2:c.3212C>A	p.Ser1071Tyr	p.S1071Y	ENST00000228682	NM_005269.2	1071	tCt/tAt																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233134	69233134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	21	326	0	ENST00000462284.1:c.999G>T	p.Glu333Asp	p.E333D	ENST00000462284	NM_002392.5	333	gaG/gaT																																																																														
IGF1	3479	MSKCC	GRCh37	12	102813310	102813310	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	156	417	0	ENST00000307046.8:c.379A>G	p.Thr127Ala	p.T127A	ENST00000307046	NM_001111285.1	127	Acc/Gcc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120722	115120722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	270	650	0	ENST00000257566.3:c.284C>T	p.Pro95Leu	p.P95L	ENST00000257566	NM_016569.3	95	cCc/cTc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431327	121431327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	28	301	0	ENST00000257555.6:c.531C>A	p.Phe177Leu	p.F177L	ENST00000257555		177	ttC/ttA																																																																														
POLE	5426	MSKCC	GRCh37	12	133202820	133202820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	180	479	1	ENST00000320574.5:c.6414C>A	p.Phe2138Leu	p.F2138L	ENST00000320574	NM_006231.2	2138	ttC/ttA																																																																														
LATS2	26524	MSKCC	GRCh37	13	21620068	21620068	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139154828		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	234	642	0	ENST00000382592.4:c.98C>T	p.Ser33Leu	p.S33L	ENST00000382592	NM_014572.2	33	tCg/tTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601304	28601304	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	91	386	0	ENST00000241453.7:c.2128T>A	p.Phe710Ile	p.F710I	ENST00000241453	NM_004119.2	710	Ttt/Att																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005371	29005371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	95	556	0	ENST00000282397.4:c.890C>A	p.Thr297Asn	p.T297N	ENST00000282397	NM_002019.4	297	aCt/aAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913900	32913900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	39	432	0	ENST00000380152.3:c.5408C>A	p.Thr1803Asn	p.T1803N	ENST00000380152		1803	aCt/aAt																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281656	49281656	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	200	791	0	ENST00000282018.3:c.703G>T	p.Glu235Ter	p.E235*	ENST00000282018	NM_020377.2	235	Gaa/Taa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107764	30107764	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	193	514	0	ENST00000331968.5:c.916T>G	p.Phe306Val	p.F306V	ENST00000331968	NM_002742.2	306	Ttc/Gtc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610191	81610191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	99	376	1	ENST00000298171.2:c.1789G>A	p.Val597Ile	p.V597I	ENST00000298171	NM_000369.2	597	Gtc/Atc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643692	38643692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	153	694	0	ENST00000299084.4:c.1162T>C	p.Ser388Pro	p.S388P	ENST00000299084	NM_152594.2	388	Tct/Cct																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43699633	43699633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	208	561	0	ENST00000382044.4:c.5882G>T	p.Arg1961Ile	p.R1961I	ENST00000382044	NM_001141980.1	1961	aGa/aTa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423571	88423571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	135	527	0	ENST00000360948.2:c.2264G>A	p.Ser755Asn	p.S755N	ENST00000360948	NM_001012338.2	755	aGc/aAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670415	88670415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	65	285	0	ENST00000360948.2:c.1271A>G	p.Lys424Arg	p.K424R	ENST00000360948	NM_001012338.2	424	aAa/aGa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819305	3819305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	49	586	0	ENST00000262367.5:c.2930C>T	p.Ser977Leu	p.S977L	ENST00000262367	NM_004380.2	977	tCg/tTg																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349099	11349099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	93	286	0	ENST00000332029.2:c.237C>A	p.Phe79Leu	p.F79L	ENST00000332029	NM_003745.1	79	ttC/ttA																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813766	50813766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	147	593	1	ENST00000398568.2:c.1320G>T	p.Gln440His	p.Q440H	ENST00000398568	NM_001042412.1	440	caG/caT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828296	72828296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	160	572	0	ENST00000268489.5:c.8285G>A	p.Gly2762Glu	p.G2762E	ENST00000268489	NM_006885.3	2762	gGa/gAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830513	72830513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	160	614	0	ENST00000268489.5:c.6068G>T	p.Arg2023Ile	p.R2023I	ENST00000268489	NM_006885.3	2023	aGa/aTa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888129	81888129	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	81	437	1	ENST00000359376.3:c.274G>T	p.Glu92Ter	p.E92*	ENST00000359376	NM_002661.3	92	Gaa/Taa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81973581	81973581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	106	562	0	ENST00000359376.3:c.3398G>A	p.Arg1133His	p.R1133H	ENST00000359376	NM_002661.3	1133	cGc/cAc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984028	7984028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	93	334	1	ENST00000319144.4:c.598C>A	p.Leu200Ile	p.L200I	ENST00000319144	NM_001139.2	200	Ctc/Atc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15950311	15950311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	227	702	1	ENST00000268712.3:c.6633G>T	p.Glu2211Asp	p.E2211D	ENST00000268712	NM_006311.3	2211	gaG/gaT																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687473	37687473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	20	216	0	ENST00000447079.4:c.4377G>T	p.Trp1459Cys	p.W1459C	ENST00000447079	NM_015083.1	1459	tgG/tgT																																																																														
EZH1	2145	MSKCC	GRCh37	17	40872306	40872306	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	253	692	0	ENST00000428826.2:c.649C>T	p.Arg217Ter	p.R217*	ENST00000428826		217	Cga/Tga																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59820424	59820424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	162	401	2	ENST00000259008.2:c.2329C>T	p.Arg777Cys	p.R777C	ENST00000259008	NM_032043.2	777	Cgt/Tgt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554147	63554147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	167	655	0	ENST00000307078.5:c.592G>A	p.Glu198Lys	p.E198K	ENST00000307078	NM_004655.3	198	Gaa/Aaa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39567850	39567850	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	57	221	0	ENST00000262039.4:c.606A>C	p.Glu202Asp	p.E202D	ENST00000262039	NM_002647.2	202	gaA/gaC																																																																														
MALT1	10892	MSKCC	GRCh37	18	56412984	56412984	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	171	369	0	ENST00000348428.3:c.1998T>G	p.His666Gln	p.H666Q	ENST00000348428	NM_006785.3	666	caT/caG																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10283825	10283825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	189	568	0	ENST00000340748.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000340748		221	Gaa/Taa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100009	11100009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	187	501	0	ENST00000344626.4:c.1135G>A	p.Ala379Thr	p.A379T	ENST00000344626	NM_003072.3	379	Gca/Aca																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19261533	19261533	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	223	566	0	ENST00000162023.5:c.12A>C	p.Lys4Asn	p.K4N	ENST00000162023		4	aaA/aaC																																																																														
CIC	23152	MSKCC	GRCh37	19	42790984	42790984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	232	592	1	ENST00000575354.2:c.129C>A	p.Phe43Leu	p.F43L	ENST00000575354	NM_015125.3	43	ttC/ttA																																																																														
ALK	238	MSKCC	GRCh37	2	29551328	29551328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	69	502	0	ENST00000389048.3:c.1302G>T	p.Lys434Asn	p.K434N	ENST00000389048	NM_004304.4	434	aaG/aaT																																																																														
SOS1	6654	MSKCC	GRCh37	2	39224114	39224115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	260	575	0	ENST00000402219.2:c.3029dup	p.Asn1011GlnfsTer12	p.N1011Qfs*12	ENST00000402219	NM_005633.3	1010	ttc/ttTc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033448	48033448	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	150	505	1	ENST00000234420.5:c.3752C>A	p.Ser1251Ter	p.S1251*	ENST00000234420	NM_000179.2	1251	tCa/tAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033789	48033789	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	88	258	0	ENST00000234420.5:c.4000C>T	p.Arg1334Trp	p.R1334W	ENST00000234420	NM_000179.2	1334	Cgg/Tgg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719204	61719204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	32	364	1	ENST00000401558.2:c.1853T>G	p.Ile618Ser	p.I618S	ENST00000401558	NM_003400.3	618	aTt/aGt																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96920736	96920736	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	96	258	0	ENST00000258439.3:c.245-1G>A		p.X82_splice	ENST00000258439	NM_001193304.2	82																																																																															
CXCR4	7852	MSKCC	GRCh37	2	136872777	136872777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	98	371	0	ENST00000241393.3:c.721A>G	p.Thr241Ala	p.T241A	ENST00000241393	NM_003467.2	241	Aca/Gca																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095913	178095913	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	193	472	0	ENST00000397062.3:c.1418T>G	p.Ile473Ser	p.I473S	ENST00000397062	NM_006164.4	473	aTc/aGc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719632	190719632	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	74	164	0	ENST00000441310.2:c.1634C>A	p.Ser545Ter	p.S545*	ENST00000441310	NM_000534.4	545	tCa/tAa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422503	225422503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190453078		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	215	525	0	ENST00000264414.4:c.137G>A	p.Arg46His	p.R46H	ENST00000264414	NM_003590.4	46	cGt/cAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877425	40877425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	118	471	0	ENST00000373198.4:c.2271G>T	p.Glu757Asp	p.E757D	ENST00000373198	NM_133170.3	757	gaG/gaT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161912	47161912	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	177	423	0	ENST00000409792.3:c.4214A>C	p.Lys1405Thr	p.K1405T	ENST00000409792	NM_014159.6	1405	aAa/aCa																																																																														
MST1	4485	MSKCC	GRCh37	3	49723626	49723626	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	72	202	0	ENST00000449682.2:c.1017-1G>T		p.X339_splice	ENST00000449682	NM_020998.3	339																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52661288	52661288	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	169	382	0	ENST00000394830.3:c.1541+1G>A		p.X514_splice	ENST00000394830	NM_018313.4	514																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134920479	134920479	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	103	605	0	ENST00000398015.3:c.2294T>C	p.Leu765Pro	p.L765P	ENST00000398015	NM_004441.4	765	cTc/cCc																																																																														
TP63	8626	MSKCC	GRCh37	3	189585701	189585701	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	183	490	0	ENST00000264731.3:c.962T>G	p.Ile321Ser	p.I321S	ENST00000264731	NM_003722.4	321	aTt/aGt																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902664	1902664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	234	575	1	ENST00000382891.5:c.283G>T	p.Asp95Tyr	p.D95Y	ENST00000382891	NM_133335.3	95	Gat/Tat																																																																														
KDR	3791	MSKCC	GRCh37	4	55955933	55955933	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	38	399	1	ENST00000263923.4:c.3229A>C	p.Ile1077Leu	p.I1077L	ENST00000263923	NM_002253.2	1077	Att/Ctt																																																																														
KDR	3791	MSKCC	GRCh37	4	55972865	55972865	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	83	405	1	ENST00000263923.4:c.1525G>T	p.Gly509Ter	p.G509*	ENST00000263923	NM_002253.2	509	Gga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66361225	66361225	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs150719652		P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	21	286	0	ENST00000273854.3:c.947T>C	p.Ile316Thr	p.I316T	ENST00000273854	NM_004439.5	316	aTc/aCc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156588	106156588	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	22	275	0	ENST00000380013.4:c.1489A>G	p.Thr497Ala	p.T497A	ENST00000380013	NM_001127208.2	497	Act/Gct																																																																														
TET2	54790	MSKCC	GRCh37	4	106157856	106157856	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	17	248	0	ENST00000380013.4:c.2757C>A	p.Tyr919Ter	p.Y919*	ENST00000380013	NM_001127208.2	919	taC/taA																																																																														
TET2	54790	MSKCC	GRCh37	4	106158407	106158407	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	17	278	0	ENST00000380013.4:c.3308A>C	p.Asn1103Thr	p.N1103T	ENST00000380013	NM_001127208.2	1103	aAt/aCt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532900	187532900	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	21	349	0	ENST00000441802.2:c.9493A>C	p.Ile3165Leu	p.I3165L	ENST00000441802	NM_005245.3	3165	Att/Ctt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515625	31515625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	103	398	0	ENST00000344624.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000344624		332	Gaa/Aaa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56152446	56152446	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	67	164	0	ENST00000399503.3:c.502G>T	p.Glu168Ter	p.E168*	ENST00000399503	NM_005921.1	168	Gaa/Taa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155672	56155672	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	115	278	0	ENST00000399503.3:c.764A>T	p.Asn255Ile	p.N255I	ENST00000399503	NM_005921.1	255	aAc/aTc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754273	57754273	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	41	466	0	ENST00000274289.3:c.578T>G	p.Leu193Arg	p.L193R	ENST00000274289	NM_006622.3	193	cTg/cGg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149450108	149450108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	196	660	0	ENST00000286301.3:c.1109G>A	p.Arg370His	p.R370H	ENST00000286301	NM_005211.3	370	cGc/cAc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460453	149460453	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	168	633	0	ENST00000286301.3:c.184T>G	p.Ser62Ala	p.S62A	ENST00000286301	NM_005211.3	62	Tct/Gct																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509454	149509454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	188	664	0	ENST00000261799.4:c.1445A>G	p.Tyr482Cys	p.Y482C	ENST00000261799	NM_002609.3	482	tAc/tGc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562133	176562133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	43	538	1	ENST00000439151.2:c.29G>T	p.Arg10Ile	p.R10I	ENST00000439151	NM_022455.4	10	aGa/aTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638065	176638065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	170	588	0	ENST00000439151.2:c.2665C>A	p.Leu889Ile	p.L889I	ENST00000439151	NM_022455.4	889	Ctt/Att																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638068	176638068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	47	591	0	ENST00000439151.2:c.2668T>G	p.Phe890Val	p.F890V	ENST00000439151	NM_022455.4	890	Ttc/Gtc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675679	30675679	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	381	871	0	ENST00000376406.3:c.2677G>T	p.Glu893Ter	p.E893*	ENST00000376406	NM_014641.2	893	Gaa/Taa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188932	32188932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	41	741	0	ENST00000375023.3:c.622G>T	p.Gly208Cys	p.G208C	ENST00000375023	NM_004557.3	208	Ggc/Tgc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547204	106547204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	99	235	0	ENST00000369096.4:c.441C>A	p.Phe147Leu	p.F147L	ENST00000369096	NM_001198.3	147	ttC/ttA																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026402	6026402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	120	419	0	ENST00000265849.7:c.1994G>T	p.Arg665Ile	p.R665I	ENST00000265849	NM_000535.5	665	aGa/aTa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026547	6026547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	356	974	1	ENST00000265849.7:c.1849C>T	p.Pro617Ser	p.P617S	ENST00000265849	NM_000535.5	617	Ccc/Tcc																																																																														
ETV1	2115	MSKCC	GRCh37	7	14028674	14028674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	128	333	0	ENST00000405192.2:c.4G>T	p.Asp2Tyr	p.D2Y	ENST00000405192	NM_001163147.1	2	Gat/Tat																																																																														
MET	4233	MSKCC	GRCh37	7	116339235	116339235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	84	342	0	ENST00000397752.3:c.97T>C	p.Ser33Pro	p.S33P	ENST00000397752	NM_000245.2	33	Tcc/Ccc																																																																														
BRAF	673	MSKCC	GRCh37	7	140482825	140482825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	186	522	1	ENST00000288602.6:c.1310G>A	p.Arg437Gln	p.R437Q	ENST00000288602	NM_004333.4	437	cGa/cAa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148514413	148514413	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	40	482	0	ENST00000320356.2:c.1311G>A	p.Trp437Ter	p.W437*	ENST00000320356	NM_004456.4	437	tgG/tgA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874046	151874046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	123	572	0	ENST00000262189.6:c.8492C>A	p.Ser2831Tyr	p.S2831Y	ENST00000262189	NM_170606.2	2831	tCt/tAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152008888	152008888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	107	312	0	ENST00000262189.6:c.734C>A	p.Ser245Tyr	p.S245Y	ENST00000262189	NM_170606.2	245	tCt/tAt																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345930	152345930	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	51	554	0	ENST00000359321.1:c.640C>T	p.Arg214Ter	p.R214*	ENST00000359321	NM_005431.1	214	Cga/Tga																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346247	152346247	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	150	549	0	ENST00000359321.1:c.323T>G	p.Ile108Ser	p.I108S	ENST00000359321	NM_005431.1	108	aTc/aGc																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38133268	38133268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	51	502	1	ENST00000317025.8:c.4205G>A	p.Arg1402His	p.R1402H	ENST00000317025	NM_023034.1	1402	cGc/cAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68939540	68939540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	48	307	0	ENST00000288368.4:c.525G>T	p.Lys175Asn	p.K175N	ENST00000288368	NM_024870.2	175	aaG/aaT																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968198	68968198	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	29	570	0	ENST00000288368.4:c.1227C>A	p.Cys409Ter	p.C409*	ENST00000288368	NM_024870.2	409	tgC/tgA																																																																														
PREX2	80243	MSKCC	GRCh37	8	69028055	69028055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	100	464	0	ENST00000288368.4:c.3214G>T	p.Asp1072Tyr	p.D1072Y	ENST00000288368	NM_024870.2	1072	Gac/Tac																																																																														
MYC	4609	MSKCC	GRCh37	8	128750813	128750813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	151	529	0	ENST00000377970.2:c.350T>C	p.Val117Ala	p.V117A	ENST00000377970	NM_002467.4	117	gTg/gCg																																																																														
MYC	4609	MSKCC	GRCh37	8	128752662	128752662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	67	212	0	ENST00000377970.2:c.823G>A	p.Glu275Lys	p.E275K	ENST00000377970	NM_002467.4	275	Gaa/Aaa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101911481	101911481	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	71	246	0	ENST00000374994.4:c.1406A>C	p.Lys469Thr	p.K469T	ENST00000374994	NM_004612.2	469	aAa/aCa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127916212	127916212	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	212	517	0	ENST00000373547.4:c.432A>C	p.Lys144Asn	p.K144N	ENST00000373547	NM_002721.4	144	aaA/aaC																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328356	137328356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	146	693	0	ENST00000481739.1:c.1285G>A	p.Gly429Arg	p.G429R	ENST00000481739	NM_002957.4	429	Ggg/Agg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44937668	44937668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	211	251	0	ENST00000377967.4:c.2856C>A	p.Phe952Leu	p.F952L	ENST00000377967	NM_021140.2	952	ttC/ttA																																																																														
ATRX	546	MSKCC	GRCh37	X	76938995	76938995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	30	294	0	ENST00000373344.5:c.1753G>A	p.Glu585Lys	p.E585K	ENST00000373344	NM_000489.3	585	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76939158	76939158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	207	281	0	ENST00000373344.5:c.1590G>T	p.Glu530Asp	p.E530D	ENST00000373344	NM_000489.3	530	gaG/gaT																																																																														
XIAP	331	MSKCC	GRCh37	X	123020327	123020327	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	22	221	0	ENST00000355640.3:c.815T>G	p.Phe272Cys	p.F272C	ENST00000355640		272	tTt/tGt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123182890	123182890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	23	147	0	ENST00000218089.9:c.855G>T	p.Met285Ile	p.M285I	ENST00000218089	NM_001042749.1	285	atG/atT																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480631	123480631	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	15	192	0	ENST00000371139.4:c.137+2T>C		p.X46_splice	ENST00000371139	NM_001114937.2	46																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9934512	9934512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	117	326	0	ENST00000330684.3:c.1643C>T	p.Ala548Val	p.A548V	ENST00000330684	NM_001134407.1	548	gCt/gTt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89858439	89858439	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	239	579	0	ENST00000389301.3:c.1121A>T	p.His374Leu	p.H374L	ENST00000389301	NM_000135.2	374	cAt/cTt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905510	50905510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	368	902	0	ENST00000440232.2:c.638C>T	p.Thr213Ile	p.T213I	ENST00000440232	NM_002691.3	213	aCc/aTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518275	187518275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	105	295	0	ENST00000441802.2:c.12419C>T	p.Ala4140Val	p.A4140V	ENST00000441802	NM_005245.3	4140	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0035434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	90	567	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0035434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	121	558	0	ENST00000269305.4:c.680_681dup	p.Asp228LeufsTer20	p.D228Lfs*20	ENST00000269305	NM_001126112.2	227	-/CT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	226	683	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625249	69625249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	186	804	0	ENST00000334134.2:c.544G>A	p.Val182Met	p.V182M	ENST00000334134	NM_005247.2	182	Gtg/Atg																																																																														
SMO	6608	MSKCC	GRCh37	7	128848674	128848674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	46	651	1	ENST00000249373.3:c.1339G>A	p.Glu447Lys	p.E447K	ENST00000249373	NM_005631.4	447	Gag/Aag																																																																														
SDHA	6389	MSKCC	GRCh37	5	226125	226125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	84	790	0	ENST00000264932.6:c.584G>A	p.Arg195Gln	p.R195Q	ENST00000264932	NM_004168.2	195	cGg/cAg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681341	88681341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	21	243	0	ENST00000372037.3:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000372037	NM_004329.2	411	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445064	49445064	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	102	626	0	ENST00000301067.7:c.2402C>G	p.Pro801Arg	p.P801R	ENST00000301067	NM_003482.3	801	cCt/cGt																																																																														
MGA	23269	MSKCC	GRCh37	15	42028810	42028810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	132	646	0	ENST00000219905.7:c.4348C>A	p.Leu1450Met	p.L1450M	ENST00000219905	NM_001164273.1	1450	Ctg/Atg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644820	67644820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	29	430	0	ENST00000264010.4:c.85C>T	p.Arg29Trp	p.R29W	ENST00000264010	NM_006565.3	29	Cgg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47142943	47142948	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTACC	CTTACC	-			P-0035435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	39	323	0	ENST00000409792.3:c.5015_5015+5del		p.X1672_splice	ENST00000409792	NM_014159.6	1672																																																																															
BCL6	604	MSKCC	GRCh37	3	187440365	187440365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	44	588	1	ENST00000232014.4:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000232014	NM_001130845.1	668	Cgt/Tgt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518121	8518121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	71	514	0	ENST00000356435.5:c.1270G>T	p.Val424Phe	p.V424F	ENST00000356435		424	Gtc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	58	295	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	29	373	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578259	7578259	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	84	468	0	ENST00000269305.4:c.590T>G	p.Val197Gly	p.V197G	ENST00000269305	NM_001126112.2	197	gTg/gGg																																																																														
APC	324	MSKCC	GRCh37	5	112177659	112177660	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	69	192	0	ENST00000257430.4:c.6371dup	p.Leu2124PhefsTer3	p.L2124Ffs*3	ENST00000257430	NM_000038.5	2123	tgt/tgTt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729925	30729926	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0035440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	47	261	0	ENST00000359013.4:c.1521_1522del	p.Val509ArgfsTer31	p.V509Rfs*31	ENST00000359013	NM_001024847.2	507	ccCTgt/ccgt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61725860	61725860	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	45	496	0	ENST00000401558.2:c.707T>A	p.Ile236Asn	p.I236N	ENST00000401558	NM_003400.3	236	aTt/aAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	131	744	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MGA	23269	MSKCC	GRCh37	15	42041327	42041327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	28	714	0	ENST00000219905.7:c.5522G>A	p.Arg1841Gln	p.R1841Q	ENST00000219905	NM_001164273.1	1841	cGg/cAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543850	212543850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	63	382	0	ENST00000342788.4:c.1549C>A	p.Pro517Thr	p.P517T	ENST00000342788	NM_005235.2	517	Cca/Aca																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984395	201984395	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	236	696	2	ENST00000359651.3:c.1060T>A	p.Phe354Ile	p.F354I	ENST00000359651		354	Ttt/Att																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732926	30732927	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGTGAGACGTTGACTGAGTGCTGGGACCACGACCCAGAGGCCCGTCTC			P-0035467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	31	290	0	ENST00000359013.4:c.1615_1662dup	p.Cys539_Leu554dup	p.C539_L554dup	ENST00000359013	NM_001024847.2	539	-/TGTGAGACGTTGACTGAGTGCTGGGACCACGACCCAGAGGCCCGTCTC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			728	133	434	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			764	28	659	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	68	666	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0035471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	30	211	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	396	671	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106350	27106363	+	frameshift_variant	Frame_Shift_Del	DEL	CATTCGAAGCCTGT	CATTCGAAGCCTGT	-			P-0035471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	59	585	0	ENST00000324856.7:c.5965_5978del	p.Arg1989CysfsTer5	p.R1989Cfs*5	ENST00000324856	NM_006015.4	1987	acCATTCGAAGCCTGTca/acca																																																																														
ATM	472	MSKCC	GRCh37	11	108098355	108098355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	53	367	0	ENST00000278616.4:c.4A>G	p.Ser2Gly	p.S2G	ENST00000278616	NM_000051.3	2	Agt/Ggt																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856655	111856655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	32	184	0	ENST00000341259.2:c.706G>A	p.Val236Met	p.V236M	ENST00000341259	NM_005475.2	236	Gtg/Atg																																																																														
CIC	23152	MSKCC	GRCh37	19	42791024	42791027	+	frameshift_variant	Frame_Shift_Del	DEL	GAGG	GAGG	-			P-0035471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	29	512	0	ENST00000575354.2:c.169_172del	p.Glu57ProfsTer147	p.E57Pfs*147	ENST00000575354	NM_015125.3	57	GAGGcc/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	23	507	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SRC	6714	MSKCC	GRCh37	20	36031750	36031750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	29	525	1	ENST00000358208.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000358208		527	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971188	21971189	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	26	366	0	ENST00000304494.5:c.169_170del	p.Ala57ProfsTer62	p.A57Pfs*62	ENST00000304494	NM_000077.4	57	GCc/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971188	21971189	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	26	366	0	ENST00000304494.5:c.169_170del	p.Ala57ProfsTer62	p.A57Pfs*62	ENST00000304494	NM_000077.4	57	GCc/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971188	21971189	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	26	366	0	ENST00000304494.5:c.169_170del	p.Ala57ProfsTer62	p.A57Pfs*62	ENST00000304494	NM_000077.4	57	GCc/c																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952076	178952076	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	16	334	0	ENST00000263967.3:c.3131A>G	p.Asn1044Ser	p.N1044S	ENST00000263967	NM_006218.2	1044	aAt/aGt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111012	193111012	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	23	199	0	ENST00000367435.3:c.545T>C	p.Ile182Thr	p.I182T	ENST00000367435	NM_024529.4	182	aTt/aCt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575109	48575109	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	19	387	1	ENST00000342988.3:c.303G>A	p.Trp101Ter	p.W101*	ENST00000342988	NM_005359.5	101	tgG/tgA																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073432	8073432	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	273	552	0	ENST00000377482.5:c.1227A>C	p.Lys409Asn	p.K409N	ENST00000377482	NM_018948.3	409	aaA/aaC																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521540	46521540	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	306	653	0	ENST00000262741.5:c.868G>T	p.Glu290Ter	p.E290*	ENST00000262741	NM_003629.3	290	Gaa/Taa																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439657	51439657	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	191	351	0	ENST00000262662.1:c.222T>G	p.Ile74Met	p.I74M	ENST00000262662		74	atT/atG																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307158	65307158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	238	400	0	ENST00000342505.4:c.2530G>T	p.Asp844Tyr	p.D844Y	ENST00000342505	NM_002227.2	844	Gac/Tac																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745955	162745955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	159	321	0	ENST00000367921.3:c.2078A>G	p.Gln693Arg	p.Q693R	ENST00000367921	NM_006182.2	693	cAa/cGa																																																																														
IL10	3586	MSKCC	GRCh37	1	206943235	206943235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	184	348	0	ENST00000423557.1:c.383G>A	p.Arg128Gln	p.R128Q	ENST00000423557	NM_000572.2	128	cGa/cAa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716123	243716123	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	322	559	0	ENST00000263826.5:c.1071A>C	p.Leu357Phe	p.L357F	ENST00000263826	NM_005465.4	357	ttA/ttC																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244913	123244913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	340	806	1	ENST00000358487.5:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000358487	NM_000141.4	731	Gaa/Aaa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247533	123247533	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	359	560	0	ENST00000358487.5:c.1958A>C	p.Asn653Thr	p.N653T	ENST00000358487	NM_000141.4	653	aAt/aCt																																																																														
CBL	867	MSKCC	GRCh37	11	119103328	119103328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	219	436	0	ENST00000264033.4:c.366G>T	p.Leu122Phe	p.L122F	ENST00000264033	NM_005188.3	122	ttG/ttT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	436	528	2	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	220	483	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864118	57864118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200306754		P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	243	518	0	ENST00000228682.2:c.1595G>A	p.Arg532His	p.R532H	ENST00000228682	NM_005269.2	532	cGc/cAc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112891144	112891144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	319	640	0	ENST00000351677.2:c.478A>G	p.Ser160Gly	p.S160G	ENST00000351677	NM_002834.3	160	Agc/Ggc																																																																														
POLE	5426	MSKCC	GRCh37	12	133250213	133250213	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	228	605	0	ENST00000320574.5:c.1307C>G	p.Pro436Arg	p.P436R	ENST00000320574	NM_006231.2	436	cCc/cGc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964095	28964095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	297	562	0	ENST00000282397.4:c.1807A>G	p.Ser603Gly	p.S603G	ENST00000282397	NM_002019.4	603	Agt/Ggt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893382	32893382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	200	310	0	ENST00000380152.3:c.236T>C	p.Ile79Thr	p.I79T	ENST00000380152		79	aTa/aCa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913282	32913282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	244	440	0	ENST00000380152.3:c.4790C>A	p.Ser1597Tyr	p.S1597Y	ENST00000380152		1597	tCt/tAt																																																																														
RB1	5925	MSKCC	GRCh37	13	48934254	48934254	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	213	502	0	ENST00000267163.4:c.709G>T	p.Glu237Ter	p.E237*	ENST00000267163	NM_000321.2	237	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	49047519	49047519	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	151	340	0	ENST00000267163.4:c.2513C>A	p.Ser838Ter	p.S838*	ENST00000267163	NM_000321.2	838	tCa/tAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42050032	42050032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	137	308	0	ENST00000219905.7:c.7186C>T	p.Arg2396Ter	p.R2396*	ENST00000219905	NM_001164273.1	2396	Cga/Tga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678514	88678514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	217	484	0	ENST00000360948.2:c.1022C>A	p.Pro341His	p.P341H	ENST00000360948	NM_001012338.2	341	cCt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	589	633	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011200	12011200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	467	383	0	ENST00000353533.5:c.607G>T	p.Glu203Ter	p.E203*	ENST00000353533	NM_003010.3	203	Gaa/Taa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	507	705	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215366	41215366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	577	548	0	ENST00000357654.3:c.5177G>T	p.Arg1726Ile	p.R1726I	ENST00000357654	NM_007294.3	1726	aGa/aTa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244732	41244732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	769	792	0	ENST00000357654.3:c.2816T>C	p.Val939Ala	p.V939A	ENST00000357654	NM_007294.3	939	gTt/gCt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245063	41245063	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	954	857	0	ENST00000357654.3:c.2485T>G	p.Phe829Val	p.F829V	ENST00000357654	NM_007294.3	829	Ttt/Gtt																																																																														
YES1	7525	MSKCC	GRCh37	18	751726	751726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	204	423	0	ENST00000314574.4:c.350G>T	p.Arg117Ile	p.R117I	ENST00000314574	NM_005433.3	117	aGa/aTa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11100016	11100016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	480	519	2	ENST00000344626.4:c.1142G>A	p.Arg381Gln	p.R381Q	ENST00000344626	NM_003072.3	381	cGa/cAa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15297788	15297788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	710	742	0	ENST00000263388.2:c.1852G>A	p.Glu618Lys	p.E618K	ENST00000263388	NM_000435.2	618	Gaa/Aaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966040	25966040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	567	735	1	ENST00000435504.4:c.3166G>A	p.Glu1056Lys	p.E1056K	ENST00000435504		1056	Gaa/Aaa																																																																														
ALK	238	MSKCC	GRCh37	2	29451891	29451891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	275	663	2	ENST00000389048.3:c.2674G>A	p.Ala892Thr	p.A892T	ENST00000389048	NM_004304.4	892	Gcc/Acc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46583316	46583316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	312	430	0	ENST00000263734.3:c.244G>A	p.Glu82Lys	p.E82K	ENST00000263734	NM_001430.4	82	Gaa/Aaa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044542	128044542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	338	486	0	ENST00000285398.2:c.1079G>A	p.Arg360His	p.R360H	ENST00000285398	NM_000122.1	360	cGc/cAc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198260920	198260920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	319	669	0	ENST00000335508.6:c.3399G>T	p.Met1133Ile	p.M1133I	ENST00000335508	NM_012433.2	1133	atG/atT																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198268383	198268383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	197	384	1	ENST00000335508.6:c.1645C>T	p.Arg549Cys	p.R549C	ENST00000335508	NM_012433.2	549	Cgt/Tgt																																																																														
CASP8	841	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	314	403	0	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39742794	39742794	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	313	324	1	ENST00000361337.2:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000361337	NM_003286.2	546	cGa/cAa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29106017	29106017	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	207	440	0	ENST00000328354.6:c.823G>T	p.Glu275Ter	p.E275*	ENST00000328354	NM_007194.3	275	Gaa/Taa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52621440	52621440	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	273	493	0	ENST00000394830.3:c.2977T>G	p.Phe993Val	p.F993V	ENST00000394830	NM_018313.4	993	Ttt/Gtt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911655	134911655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	165	315	0	ENST00000398015.3:c.2120C>A	p.Ser707Tyr	p.S707Y	ENST00000398015	NM_004441.4	707	tCt/tAt																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170015172	170015172	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	279	571	0	ENST00000295797.4:c.1578T>G	p.Asp526Glu	p.D526E	ENST00000295797	NM_002740.5	526	gaT/gaG																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1920084	1920084	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	263	553	0	ENST00000382891.5:c.1144G>T	p.Glu382Ter	p.E382*	ENST00000382891	NM_133335.3	382	Gaa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55958820	55958820	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	272	491	0	ENST00000263923.4:c.3033A>C	p.Gln1011His	p.Q1011H	ENST00000263923	NM_002253.2	1011	caA/caC																																																																														
KDR	3791	MSKCC	GRCh37	4	55968548	55968548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	256	477	0	ENST00000263923.4:c.2115G>T	p.Glu705Asp	p.E705D	ENST00000263923	NM_002253.2	705	gaG/gaT																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245447	153245447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	258	596	0	ENST00000281708.4:c.1744T>C	p.Ser582Pro	p.S582P	ENST00000281708	NM_033632.3	582	Tcg/Ccg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	140	228	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517847	187517847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202133523		P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	189	406	1	ENST00000441802.2:c.12847G>A	p.Glu4283Lys	p.E4283K	ENST00000441802	NM_005245.3	4283	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534269	187534269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	182	376	1	ENST00000441802.2:c.9457G>A	p.Asp3153Asn	p.D3153N	ENST00000441802	NM_005245.3	3153	Gac/Aac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554893	187554893	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	239	501	0	ENST00000441802.2:c.4268C>G	p.Ser1423Ter	p.S1423*	ENST00000441802	NM_005245.3	1423	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112102033	112102033	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	127	295	0	ENST00000257430.4:c.146A>G	p.Lys49Arg	p.K49R	ENST00000257430	NM_000038.5	49	aAa/aGa																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	159	392	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174658	112174658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	167	361	0	ENST00000257430.4:c.3367C>A	p.Gln1123Lys	p.Q1123K	ENST00000257430	NM_000038.5	1123	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	124	204	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169036	32169036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	296	747	0	ENST00000375023.3:c.3997C>T	p.Arg1333Cys	p.R1333C	ENST00000375023	NM_004557.3	1333	Cgt/Tgt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93968000	93968000	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	456	387	0	ENST00000369303.4:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000369303	NM_004440.3	643	Gaa/Taa																																																																														
HGF	3082	MSKCC	GRCh37	7	81372752	81372752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	139	319	0	ENST00000222390.5:c.782G>A	p.Arg261His	p.R261H	ENST00000222390	NM_000601.4	261	cGc/cAc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508082	106508082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	69	172	0	ENST00000359195.3:c.76C>T	p.Arg26Cys	p.R26C	ENST00000359195	NM_002649.2	26	Cgc/Tgc																																																																														
SMO	6608	MSKCC	GRCh37	7	128843395	128843395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146797066		P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	465	538	0	ENST00000249373.3:c.502C>T	p.Arg168Cys	p.R168C	ENST00000249373	NM_005631.4	168	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945021	151945021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	57	73	0	ENST00000262189.6:c.2498G>T	p.Arg833Ile	p.R833I	ENST00000262189	NM_170606.2	833	aGa/aTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69011978	69011978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	658	676	0	ENST00000288368.4:c.2615C>A	p.Ser872Tyr	p.S872Y	ENST00000288368	NM_024870.2	872	tCt/tAt																																																																														
NBN	4683	MSKCC	GRCh37	8	90982702	90982702	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	187	341	0	ENST00000265433.3:c.786C>A	p.Phe262Leu	p.F262L	ENST00000265433	NM_002485.4	262	ttC/ttA																																																																														
FANCC	2176	MSKCC	GRCh37	9	97897635	97897635	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	366	415	3	ENST00000289081.3:c.836C>A	p.Ser279Ter	p.S279*	ENST00000289081	NM_000136.2	279	tCa/tAa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135777042	135777042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	272	595	0	ENST00000298552.3:c.2436A>G	p.Ile812Met	p.I812M	ENST00000298552	NM_001162426.1	812	atA/atG																																																																														
AR	367	MSKCC	GRCh37	X	66863174	66863174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	526	285	0	ENST00000374690.3:c.1693G>T	p.Asp565Tyr	p.D565Y	ENST00000374690	NM_000044.3	565	Gat/Tat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118391576	118391576	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	29	275	0	ENST00000534358.1:c.11489C>G	p.Ser3830Cys	p.S3830C	ENST00000534358	NM_005933.3	3830	tCt/tGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	120	309	3	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	260	605	14	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	196	455	6	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	130	369	2	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189926	66189926	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145811811		P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	93	302	0	ENST00000273854.3:c.3020G>A	p.Arg1007Gln	p.R1007Q	ENST00000273854	NM_004439.5	1007	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	79	240	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251754	212251754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	22	318	0	ENST00000342788.4:c.3305T>G	p.Phe1102Cys	p.F1102C	ENST00000342788	NM_005235.2	1102	tTt/tGt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18699320	18699320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	22	293	0	ENST00000266497.5:c.3421C>A	p.Leu1141Ile	p.L1141I	ENST00000266497		1141	Ctt/Att																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641280	3641280	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140600202		P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	309	638	2	ENST00000294008.3:c.2359G>A	p.Glu787Lys	p.E787K	ENST00000294008	NM_032444.2	787	Gaa/Aaa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134255	41134255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	77	387	0	ENST00000379561.5:c.1373C>T	p.Ala458Val	p.A458V	ENST00000379561	NM_002015.3	458	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	98	275	3	ENST00000257430.4:c.2805del	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/ta																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526672	106526672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	155	411	0	ENST00000359195.3:c.2965C>T	p.Pro989Ser	p.P989S	ENST00000359195	NM_002649.2	989	Cct/Tct																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652278	48652278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	518	587	13	ENST00000376670.3:c.949C>T	p.Arg317Trp	p.R317W	ENST00000376670	NM_002049.3	317	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	194	300	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	411	538	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDH1	999	MSKCC	GRCh37	16	68844107	68844107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	127	387	0	ENST00000261769.5:c.695C>T	p.Ser232Phe	p.S232F	ENST00000261769	NM_004360.3	232	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579854	7579854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	412	585	0	ENST00000269305.4:c.59C>T	p.Ser20Leu	p.S20L	ENST00000269305	NM_001126112.2	20	tCa/tTa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557389	21557389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	47	364	0	ENST00000382592.4:c.2456C>G	p.Thr819Ser	p.T819S	ENST00000382592	NM_014572.2	819	aCt/aGt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557396	21557406	+	frameshift_variant	Frame_Shift_Del	DEL	TGAACCCAGTG	TGAACCCAGTG	-			P-0035527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	53	397	0	ENST00000382592.4:c.2439_2449del	p.Cys813TrpfsTer28	p.C813Wfs*28	ENST00000382592	NM_014572.2	813	tgCACTGGGTTCAgg/tggg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934729	49934729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	184	484	0	ENST00000296474.3:c.2167G>A	p.Glu723Lys	p.E723K	ENST00000296474	NM_002447.2	723	Gag/Aag																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119585447	119585447	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0035527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	30	232	0	ENST00000316626.5:c.938C>G	p.Ser313Ter	p.S313*	ENST00000316626		313	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	79	607	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
TSC2	7249	MSKCC	GRCh37	16	2100400	2100400	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0035528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	54	424	0	ENST00000219476.3:c.139-1G>C		p.X47_splice	ENST00000219476	NM_000548.3	47																																																																															
NF1	4763	MSKCC	GRCh37	17	29490346	29490346	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	40	565	1	ENST00000358273.4:c.431del	p.Ser144PhefsTer21	p.S144Ffs*21	ENST00000358273	NM_001042492.2	144	tCt/tt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584532	187584532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	25	522	0	ENST00000441802.2:c.3501T>G	p.Asp1167Glu	p.D1167E	ENST00000441802	NM_005245.3	1167	gaT/gaG																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0035529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	45	614	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843414	3843415	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	146	379	0	ENST00000262367.5:c.1188dup	p.His397AlafsTer30	p.H397Afs*30	ENST00000262367	NM_004380.2	396	-/G																																																																														
MED12	9968	MSKCC	GRCh37	X	70344081	70344083	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0035529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	269	390	0	ENST00000374080.3:c.1820_1822del	p.Asp607del	p.D607del	ENST00000374080		606	cATGat/cat																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514336	69514354	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTACTGAAGCTGCAGAGAA	GTACTGAAGCTGCAGAGAA	C			P-0035529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	120	366	0	ENST00000294312.3:c.337-10_345delinsG		p.X113_splice	ENST00000294312	NM_005117.2	113																																																																															
DDR2	4921	MSKCC	GRCh37	1	162741882	162741882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	63	381	0	ENST00000367921.3:c.1573G>A	p.Asp525Asn	p.D525N	ENST00000367921	NM_006182.2	525	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579477	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGGA	GGGGGGA	-			P-0035530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	185	765	1	ENST00000269305.4:c.210_216del	p.Pro71TrpfsTer50	p.P71Wfs*50	ENST00000269305	NM_001126112.2	70	gcTCCCCCC/gc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561229	9561229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	43	541	0	ENST00000353224.5:c.553G>A	p.Val185Met	p.V185M	ENST00000353224	NM_177990.2	185	Gtg/Atg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670230	134670230	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	53	340	0	ENST00000398015.3:c.141del	p.Tyr48ThrfsTer5	p.Y48Tfs*5	ENST00000398015	NM_004441.4	47	ggC/gg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371616	55371616	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0035530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	137	555	2	ENST00000297316.4:c.308-2A>G		p.X103_splice	ENST00000297316	NM_022454.3	103																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	171	527	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	341	725	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	117	330	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	81	393	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508824	106508824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	216	485	0	ENST00000359195.3:c.818G>A	p.Arg273His	p.R273H	ENST00000359195	NM_002649.2	273	cGc/cAc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111097	193111099	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	67	298	0	ENST00000367435.3:c.633_635del	p.Arg211del	p.R211del	ENST00000367435	NM_024529.4	210	caGAGg/cag																																																																														
CIC	23152	MSKCC	GRCh37	19	42791587	42791587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	229	553	0	ENST00000575354.2:c.568C>T	p.Arg190Cys	p.R190C	ENST00000575354	NM_015125.3	190	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	96	406	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	199	647	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	133	335	0				ENST00000310581	NM_198253.2																																																																																
PTEN	5728	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	108	500	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																														
EED	8726	MSKCC	GRCh37	11	85989514	85989514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	111	464	0	ENST00000263360.6:c.1273C>T	p.Leu425Phe	p.L425F	ENST00000263360	NM_003797.3	425	Ctt/Ttt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641443	23641443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	212	901	0	ENST00000261584.4:c.2032C>G	p.Leu678Val	p.L678V	ENST00000261584	NM_024675.3	678	Cta/Gta																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198260799	198260799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	111	513	0	ENST00000335508.6:c.3520G>C	p.Glu1174Gln	p.E1174Q	ENST00000335508	NM_012433.2	1174	Gaa/Caa																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056634	26056634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145032219		P-0035535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	34	150	0	ENST00000343677.2:c.23C>T	p.Ala8Val	p.A8V	ENST00000343677	NM_005319.3	8	gCt/gTt																																																																														
SESN1	27244	MSKCC	GRCh37	6	109308772	109308772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	75	297	0	ENST00000436639.2:c.1631G>C	p.Arg544Thr	p.R544T	ENST00000436639	NM_014454.2	544	aGa/aCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	154	554	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	17	539	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	140	848	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112174868	112174868	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	34	338	0	ENST00000257430.4:c.3577C>T	p.Gln1193Ter	p.Q1193*	ENST00000257430	NM_000038.5	1193	Cag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992720	68992720	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182978151		P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	102	728	0	ENST00000288368.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000288368	NM_024870.2	562	cGt/cAt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274171	10274171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	53	591	0	ENST00000330684.3:c.98C>T	p.Ala33Val	p.A33V	ENST00000330684	NM_001134407.1	33	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175589	112175592	+	frameshift_variant	Frame_Shift_Del	DEL	CAAG	CAAG	-			P-0035548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	60	355	0	ENST00000257430.4:c.4300_4303del	p.Ser1434GlufsTer38	p.S1434Efs*38	ENST00000257430	NM_000038.5	1433	cCAAGc/cc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	295	451	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	10	60	0	ENST00000331920.6:c.49_51delGGC	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713544	30713546	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	118	383	0	ENST00000359013.4:c.946_948delAAG	p.Lys316del	p.K316del	ENST00000359013	NM_001024847.2	315	gAGAag/gag																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	258	1038	0	ENST00000374672.4:c.1225A>G	p.Lys409Glu	p.K409E	ENST00000374672	NM_004235.4	409	Aag/Gag																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784089	120784089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	232	916	1	ENST00000257552.2:c.896C>T	p.Ser299Leu	p.S299L	ENST00000257552	NM_002442.3	299	tCg/tTg																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14303236	14303236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	162	673	1	ENST00000256196.4:c.439C>T	p.Arg147Trp	p.R147W	ENST00000256196		147	Cgg/Tgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48881478	48881478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	66	306	1	ENST00000267163.4:c.200C>T	p.Pro67Leu	p.P67L	ENST00000267163	NM_000321.2	67	cCa/cTa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492802	56492802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	327	559	0	ENST00000407977.2:c.137C>G	p.Ala46Gly	p.A46G	ENST00000407977		46	gCt/gGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	288	638	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18644490	18644490	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs181773550		P-0035558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	375	507	0	ENST00000266497.5:c.2668G>A	p.Asp890Asn	p.D890N	ENST00000266497		890	Gat/Aat																																																																														
CCND2	894	MSKCC	GRCh37	12	4383271	4383271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	99	530	0	ENST00000261254.3:c.65G>T	p.Arg22Leu	p.R22L	ENST00000261254	NM_001759.3	22	cGa/cTa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61711177	61711177	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	74	546	1	ENST00000401558.2:c.2572C>G	p.His858Asp	p.H858D	ENST00000401558	NM_003400.3	858	Cat/Gat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576870	212576870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	107	502	1	ENST00000342788.4:c.1029G>A	p.Met343Ile	p.M343I	ENST00000342788	NM_005235.2	343	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	142	649	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820528	44820528	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0035562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	25	199	0	ENST00000377967.4:c.226-1G>C		p.X76_splice	ENST00000377967	NM_021140.2	76																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0035563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	216	528	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	548	723	1	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14317382	14317382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	213	407	0	ENST00000256196.4:c.128A>G	p.Tyr43Cys	p.Y43C	ENST00000256196		43	tAt/tGt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560475	95560475	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	196	410	0	ENST00000343455.3:c.5114A>T	p.Glu1705Val	p.E1705V	ENST00000343455	NM_177438.2	1705	gAa/gTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591122	67591136	+	inframe_deletion	In_Frame_Del	DEL	AGCTGAGAAAGACGA	AGCTGAGAAAGACGA	-			P-0035563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	127	233	0	ENST00000274335.5:c.1715_1729del	p.Gln572_Thr576del	p.Q572_T576del	ENST00000274335		572	cAGCTGAGAAAGACGAga/cga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288512	33288512	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	197	364	0	ENST00000374542.5:c.1039+1G>A		p.X347_splice	ENST00000374542	NM_001141970.1	347																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	254	389	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78858829	78858829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	199	532	0	ENST00000306801.3:c.1864G>A	p.Ala622Thr	p.A622T	ENST00000306801	NM_020761.2	622	Gcc/Acc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955914	55955914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	136	429	0	ENST00000263923.4:c.3248C>A	p.Thr1083Lys	p.T1083K	ENST00000263923	NM_002253.2	1083	aCa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	355	453	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	346	661	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
WT1	7490	MSKCC	GRCh37	11	32410675	32410675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	120	507	0	ENST00000332351.3:c.1483C>T	p.Arg495Trp	p.R495W	ENST00000332351	NM_024426.4	495	Cgg/Tgg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068977	30068977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	227	549	0	ENST00000331968.5:c.1952C>A	p.Thr651Lys	p.T651K	ENST00000331968	NM_002742.2	651	aCg/aAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779742	3779742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	276	715	0	ENST00000262367.5:c.5306G>A	p.Arg1769Gln	p.R1769Q	ENST00000262367	NM_004380.2	1769	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828680	72828680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	188	719	0	ENST00000268489.5:c.7901G>T	p.Gly2634Val	p.G2634V	ENST00000268489	NM_006885.3	2634	gGa/gTa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134885803	134885803	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	128	430	0	ENST00000398015.3:c.1714G>T	p.Glu572Ter	p.E572*	ENST00000398015	NM_004441.4	572	Gag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620657	52620657	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	34	349	0	ENST00000394830.3:c.3096del	p.Phe1032LeufsTer102	p.F1032Lfs*102	ENST00000394830	NM_018313.4	1032	ttT/tt																																																																														
VHL	7428	MSKCC	GRCh37	3	10183692	10183693	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	42	466	0	ENST00000256474.2:c.163dup	p.Glu55GlyfsTer77	p.E55Gfs*77	ENST00000256474	NM_000551.3	54	atg/atGg																																																																														
ATM	472	MSKCC	GRCh37	11	108188134	108188134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	34	328	0	ENST00000278616.4:c.6233C>T	p.Ser2078Phe	p.S2078F	ENST00000278616	NM_000051.3	2078	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576924	7576927	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GTGC	GTGC	AG			P-0035582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	56	587	1	ENST00000269305.4:c.920-1_922delinsCT		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66189908	66189908	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	48	353	1	ENST00000273854.3:c.3038T>A	p.Val1013Asp	p.V1013D	ENST00000273854	NM_004439.5	1013	gTc/gAc																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43739025	43739026	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACC			P-0035582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	47	351	0	ENST00000523873.1:c.42_43insACC	p.Leu14_Leu15insThr	p.L14_L15insT	ENST00000523873		14	-/ACC																																																																														
TSC1	7248	MSKCC	GRCh37	9	135782187	135782187	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	35	375	0	ENST00000298552.3:c.1369del	p.Ser457ValfsTer7	p.S457Vfs*7	ENST00000298552	NM_001162426.1	457	Agt/gt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224143	53224144	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0035582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	70	426	0	ENST00000375401.3:c.3407_3408del	p.Ser1136CysfsTer67	p.S1136Cfs*67	ENST00000375401	NM_004187.3	1136	tCT/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	25	425	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	45	395	1	ENST00000278616.4:c.6908dupA	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591977	48591977	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	26	350	0	ENST00000342988.3:c.1139+1G>A		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	14	495	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	214	559	0	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70451365	70451365	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	37	588	0	ENST00000373644.4:c.6205G>C	p.Glu2069Gln	p.E2069Q	ENST00000373644	NM_030625.2	2069	Gag/Cag																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	63	373	0	ENST00000412585.2:c.19C>T	p.Arg7Ter	p.R7*	ENST00000412585	NM_005514.6	7	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874893	151874893	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	192	422	0	ENST00000262189.6:c.7645C>T	p.Gln2549Ter	p.Q2549*	ENST00000262189	NM_170606.2	2549	Cag/Tag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21620123	21620123	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	226	685	0	ENST00000382592.4:c.43A>C	p.Ser15Arg	p.S15R	ENST00000382592	NM_014572.2	15	Agc/Cgc																																																																														
ATR	545	MSKCC	GRCh37	3	142188214	142188214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	72	451	0	ENST00000350721.4:c.6517C>A	p.Gln2173Lys	p.Q2173K	ENST00000350721	NM_001184.3	2173	Caa/Aaa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740543	58740544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0035642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	91	527	0	ENST00000305921.3:c.1450_1451dup	p.Leu484PhefsTer2	p.L484Ffs*2	ENST00000305921	NM_003620.3	483	act/acTTt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	100	490	0	ENST00000347630.2:c.398T>G	p.Phe133Cys	p.F133C	ENST00000347630	NM_001007230.1	133	tTc/tGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259299	16259299	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	59	258	0	ENST00000375759.3:c.6564del	p.Ala2189ProfsTer164	p.A2189Pfs*164	ENST00000375759	NM_015001.2	2188	gcT/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	63	766	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0035697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	104	618	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	72	672	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	106	843	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316397	14316397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	40	541	0	ENST00000256196.4:c.208G>A	p.Ala70Thr	p.A70T	ENST00000256196		70	Gca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	261	538	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	103	361	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	177	530	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	170	502	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681326	88681326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	136	383	0	ENST00000372037.3:c.1216C>T	p.Arg406Cys	p.R406C	ENST00000372037	NM_004329.2	406	Cgc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710590	114710610	+	inframe_deletion	In_Frame_Del	DEL	CGAACAGGAGGAGAAGAGCTC	CGAACAGGAGGAGAAGAGCTC	-			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	146	350	0	ENST00000543371.1:c.79_99del	p.Gln27_Glu33del	p.Q27_E33del	ENST00000543371	NM_001198531.1	25	ggCGAACAGGAGGAGAAGAGCTCc/ggc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223356	2223356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	234	670	2	ENST00000326181.6:c.968C>T	p.Ser323Leu	p.S323L	ENST00000326181	NM_032271.2	323	tCg/tTg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374935	45374935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	254	594	0	ENST00000262160.6:c.908C>A	p.Thr303Lys	p.T303K	ENST00000262160	NM_005901.5	303	aCa/aAa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169985763	169985763	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	62	591	0	ENST00000295797.4:c.425C>G	p.Thr142Ser	p.T142S	ENST00000295797	NM_002740.5	142	aCt/aGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	59	518	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	111	192	0				ENST00000310581	NM_198253.2																																																																																
IRS2	8660	MSKCC	GRCh37	13	110436071	110436071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1503	89	828	2	ENST00000375856.3:c.2330C>T	p.Thr777Met	p.T777M	ENST00000375856	NM_003749.2	777	aCg/aTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123199794	123199795	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0036174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	40	534	0	ENST00000218089.9:c.2096dup	p.Asn699LysfsTer4	p.N699Kfs*4	ENST00000218089	NM_001042749.1	698	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	103	366	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	128	475	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	77	346	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
NF1	4763	MSKCC	GRCh37	17	29562627	29562627	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	32	368	0	ENST00000358273.4:c.3709-2A>G		p.X1237_splice	ENST00000358273	NM_001042492.2	1237																																																																															
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	27	361	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	43	459	2	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	143	558	0	ENST00000227507.2:c.859C>T	p.Pro287Ser	p.P287S	ENST00000227507	NM_053056.2	287	Ccc/Tcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29556463	29556463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	28	344	0	ENST00000358273.4:c.2835del	p.Phe945LeufsTer9	p.F945Lfs*9	ENST00000358273	NM_001042492.2	944	Ttt/tt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717715	89717716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1393832338		P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	72	308	0	ENST00000371953.3:c.741dup	p.Pro248ThrfsTer5	p.P248Tfs*5	ENST00000371953	NM_000314.4	247	tta/ttAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	129	545	0	ENST00000269305.4:c.328C>T	p.Arg110Cys	p.R110C	ENST00000269305	NM_001126112.2	110	Cgt/Tgt																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874553	155874553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	82	421	1	ENST00000368323.3:c.206C>T	p.Ala69Val	p.A69V	ENST00000368323	NM_006912.5	69	gCc/gTc																																																																														
MED12	9968	MSKCC	GRCh37	X	70348181	70348181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	132	540	0	ENST00000374080.3:c.3245C>T	p.Thr1082Ile	p.T1082I	ENST00000374080		1082	aCc/aTc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	36	411	0	ENST00000379607.5:c.38G>A	p.Arg13His	p.R13H	ENST00000379607	NM_001412.3	13	cGc/cAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303224	15303224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	49	670	0	ENST00000263388.2:c.304G>A	p.Ala102Thr	p.A102T	ENST00000263388	NM_000435.2	102	Gcc/Acc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502190	157502190	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	32	348	1	ENST00000346085.5:c.3223C>T	p.Arg1075Ter	p.R1075*	ENST00000346085	NM_020732.3	1075	Cga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	51	537	0	ENST00000298229.2:c.1322delA	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	137	618	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46609673	46609673	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	71	601	0	ENST00000263734.3:c.2402delC	p.Pro801HisfsTer39	p.P801Hfs*39	ENST00000263734	NM_001430.4	799	ttC/tt																																																																														
TEK	7010	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	130	493	0	ENST00000380036.4:c.1250delC	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624301	89624301	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	183	433	0	ENST00000371953.3:c.75del	p.Thr26ProfsTer28	p.T26Pfs*28	ENST00000371953	NM_000314.4	25	ttG/tt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50826571	50826571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	27	198	0	ENST00000398568.2:c.2296A>T	p.Ile766Phe	p.I766F	ENST00000398568	NM_001042412.1	766	Att/Ttt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088771	27088771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	41	436	1	ENST00000324856.7:c.2380G>T	p.Gly794Trp	p.G794W	ENST00000324856	NM_006015.4	794	Ggg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101174	27101174	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	213	607	0	ENST00000324856.7:c.4456C>T	p.Gln1486Ter	p.Q1486*	ENST00000324856	NM_006015.4	1486	Cag/Tag																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46532725	46532725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	15	300	0	ENST00000262741.5:c.353G>A	p.Arg118Gln	p.R118Q	ENST00000262741	NM_003629.3	118	cGg/cAg																																																																														
PGR	5241	MSKCC	GRCh37	11	100922300	100922300	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	17	202	0	ENST00000325455.5:c.2213-1G>T		p.X738_splice	ENST00000325455	NM_001202474.3	738																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246644	46246644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	10	149	0	ENST00000334344.6:c.4738C>G	p.His1580Asp	p.H1580D	ENST00000334344	NM_152641.2	1580	Cat/Gat																																																																														
FLT3	2322	MSKCC	GRCh37	13	28644741	28644741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	46	297	0	ENST00000241453.7:c.52del	p.Ser18LeufsTer3	p.S18Lfs*3	ENST00000241453	NM_004119.2	18	Tct/ct																																																																														
EZH2	2146	MSKCC	GRCh37	7	148529800	148529800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	34	265	0	ENST00000320356.2:c.289C>A	p.Pro97Thr	p.P97T	ENST00000320356	NM_004456.4	97	Cca/Aca																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413141	63413141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	66	574	0	ENST00000330258.3:c.26C>T	p.Ala9Val	p.A9V	ENST00000330258	NM_152424.3	9	gCt/gTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76938798	76938798	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	48	505	0	ENST00000373344.5:c.1950A>T	p.Glu650Asp	p.E650D	ENST00000373344	NM_000489.3	650	gaA/gaT																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	96	434	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
MGA	23269	MSKCC	GRCh37	15	42021422	42021422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	26	338	0	ENST00000219905.7:c.3718C>T	p.Arg1240Ter	p.R1240*	ENST00000219905	NM_001164273.1	1240	Cga/Tga																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99136557	99136557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	104	493	1	ENST00000074304.5:c.46G>A	p.Ala16Thr	p.A16T	ENST00000074304	NM_001134224.1	16	Gca/Aca																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138400816	138400816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	54	255	0	ENST00000289153.2:c.2497G>C	p.Asp833His	p.D833H	ENST00000289153	NM_006219.2	833	Gat/Cat																																																																														
TEK	7010	MSKCC	GRCh37	9	27172676	27172676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	116	450	1	ENST00000380036.4:c.691G>T	p.Gly231Cys	p.G231C	ENST00000380036	NM_000459.3	231	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	149	494	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	83	324	0	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237715	16237715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	82	401	0	ENST00000375759.3:c.1162G>A	p.Asp388Asn	p.D388N	ENST00000375759	NM_015001.2	388	Gac/Aac																																																																														
ATR	545	MSKCC	GRCh37	3	142226799	142226799	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	92	251	0	ENST00000350721.4:c.5005A>G	p.Ile1669Val	p.I1669V	ENST00000350721	NM_001184.3	1669	Att/Gtt																																																																														
VHL	7428	MSKCC	GRCh37	3	10188208	10188208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	104	649	0	ENST00000256474.2:c.351G>C	p.Trp117Cys	p.W117C	ENST00000256474	NM_000551.3	117	tgG/tgC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161671	47161671	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0036524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	26	210	0	ENST00000409792.3:c.4454+1G>A		p.X1485_splice	ENST00000409792	NM_014159.6	1485																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39593460	39593460	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	112	261	0	ENST00000262039.4:c.1225G>C	p.Asp409His	p.D409H	ENST00000262039	NM_002647.2	409	Gat/Cat																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524365	187524365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	147	431	0	ENST00000441802.2:c.11315C>T	p.Pro3772Leu	p.P3772L	ENST00000441802	NM_005245.3	3772	cCc/cTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	151	483	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221214	1221216	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACA	ACA	-			P-0036565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	137	550	0	ENST00000326873.7:c.740_742del	p.Asn247del	p.N247del	ENST00000326873	NM_000455.4	246	tACAac/tac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288428	15288428	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	162	493	0	ENST00000263388.2:c.4311del	p.Phe1437LeufsTer141	p.F1437Lfs*141	ENST00000263388	NM_000435.2	1437	ttC/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	71	473	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	193	556	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	194	574	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151842334	151842334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	56	217	0	ENST00000262189.6:c.14078G>A	p.Arg4693Gln	p.R4693Q	ENST00000262189	NM_170606.2	4693	cGa/cAa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434581	99434581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	109	458	1	ENST00000268035.6:c.668C>T	p.Ala223Val	p.A223V	ENST00000268035	NM_000875.3	223	gCg/gTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946820	17946820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	349	608	0	ENST00000458235.1:c.1827C>A	p.Asp609Glu	p.D609E	ENST00000458235	NM_000215.3	609	gaC/gaA																																																																														
APC	324	MSKCC	GRCh37	5	112175764	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCACG	TGCCACG	CCCACC			P-0036616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	39	265	0	ENST00000257430.4:c.4473_4479delinsCCCACC	p.Ala1492ProfsTer15	p.A1492Pfs*15	ENST00000257430	NM_000038.5	1491	ttTGCCACG/ttCCCACC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	73	615	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	28	258	1	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3651028	3651028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	99	541	0	ENST00000294008.3:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000294008	NM_032444.2	372	cGg/cAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950256	38950256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	89	628	0	ENST00000357387.3:c.3694A>G	p.Met1232Val	p.M1232V	ENST00000357387	NM_152756.3	1232	Atg/Gtg																																																																														
LYN	4067	MSKCC	GRCh37	8	56922644	56922644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	63	557	0	ENST00000519728.1:c.1514A>C	p.Glu505Ala	p.E505A	ENST00000519728	NM_002350.3	505	gAa/gCa																																																																														
MET	4233	MSKCC	GRCh37	7	116411871	116411874	+	intron_variant	Intron	DEL	TTAA	TTAA	G			P-0036639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	60	918	0	ENST00000397752.3:c.2888-32_2888-29delinsG		p.*963*	ENST00000397752	NM_000245.2	963																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	66	669	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	63	486	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	63	486	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	63	486	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610349	10610349	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	86	870	0	ENST00000171111.5:c.361G>T	p.Glu121Ter	p.E121*	ENST00000171111	NM_203500.1	121	Gag/Tag																																																																														
KIT	3815	MSKCC	GRCh37	4	55564622	55564622	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	32	543	0	ENST00000288135.5:c.510C>G	p.Ile170Met	p.I170M	ENST00000288135	NM_000222.2	170	atC/atG																																																																														
SESN1	27244	MSKCC	GRCh37	6	109321766	109321768	+	inframe_deletion	In_Frame_Del	DEL	TTT	TTT	-			P-0036709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	51	694	3	ENST00000436639.2:c.655_657del	p.Lys219del	p.K219del	ENST00000436639	NM_014454.2	219	AAA/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	173	372	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0036713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	91	651	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152130	11152130	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	57	509	0	ENST00000344626.4:c.4318C>T	p.Gln1440Ter	p.Q1440*	ENST00000344626	NM_003072.3	1440	Cag/Tag																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181372	185181374	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0036713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	53	278	0	ENST00000265026.3:c.1316_1318del	p.Lys439del	p.K439del	ENST00000265026	NM_004721.4	438	gAGAag/gag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251927	153251927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	27	559	0	ENST00000281708.4:c.1079G>A	p.Arg360Lys	p.R360K	ENST00000281708	NM_033632.3	360	aGa/aAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	66	463	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	208	567	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	70	342	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023141	27023143	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0036723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	10	28	0	ENST00000324856.7:c.258_260del	p.Gly87del	p.G87del	ENST00000324856	NM_006015.4	83	GGC/-																																																																														
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0036723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	35	523	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0036723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	84	199	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0036723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	84	199	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0036725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	179	671	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27058072	27058072	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	70	476	1	ENST00000324856.7:c.1780C>T	p.Gln594Ter	p.Q594*	ENST00000324856	NM_006015.4	594	Cag/Tag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100739	8100739	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	222	633	0	ENST00000346208.3:c.713G>C	p.Ser238Thr	p.S238T	ENST00000346208		238	aGc/aCc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44935940	44935940	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0036725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	53	126	0	ENST00000377967.4:c.2703-2A>T		p.X901_splice	ENST00000377967	NM_021140.2	901																																																																															
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	450	608	0	ENST00000269305.4:c.314del	p.Gly105AlafsTer18	p.G105Afs*18	ENST00000269305	NM_001126112.2	105	gGc/gc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213990	36213990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	71	798	0	ENST00000222270.7:c.2816C>T	p.Thr939Ile	p.T939I	ENST00000222270	NM_014727.1	939	aCa/aTa																																																																														
MST1	4485	MSKCC	GRCh37	3	49722250	49722250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	41	445	0	ENST00000449682.2:c.1690C>A	p.Pro564Thr	p.P564T	ENST00000449682	NM_020998.3	564	Cca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	53	563	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	38	586	2	ENST00000269305.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000269305	NM_001126112.2	236	Tac/Cac																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55151628	55151628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	31	609	0	ENST00000257290.5:c.2414G>T	p.Gly805Val	p.G805V	ENST00000257290	NM_006206.4	805	gGa/gTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332165	70332165	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	12	211	0	ENST00000373644.4:c.70A>T	p.Asn24Tyr	p.N24Y	ENST00000373644	NM_030625.2	24	Aac/Tac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934861	9934861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	44	572	0	ENST00000330684.3:c.1429C>T	p.Leu477Phe	p.L477F	ENST00000330684	NM_001134407.1	477	Ctc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	70	349	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	166	573	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	83	540	0	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	83	540	0	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998919	11998919	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	56	238	0	ENST00000353533.5:c.421G>T	p.Glu141Ter	p.E141*	ENST00000353533	NM_003010.3	141	Gaa/Taa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584533	48584533	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	57	331	0	ENST00000342988.3:c.706G>T	p.Gly236Ter	p.G236*	ENST00000342988	NM_005359.5	236	Gga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0036749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	101	267	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220612	1220612	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	263	675	1	ENST00000326873.7:c.630C>A	p.Cys210Ter	p.C210*	ENST00000326873	NM_000455.4	210	tgC/tgA																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222144	5222144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	153	588	0	ENST00000357368.4:c.3191C>T	p.Thr1064Ile	p.T1064I	ENST00000357368	NM_002850.3	1064	aCa/aTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624260	89624284	+	frameshift_variant	Frame_Shift_Del	DEL	AACAAAAGGAGATATCAAGAGGATG	AACAAAAGGAGATATCAAGAGGATG	-			P-0036757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	71	301	0	ENST00000371953.3:c.34_58del	p.Asn12AspfsTer4	p.N12Dfs*4	ENST00000371953	NM_000314.4	12	AACAAAAGGAGATATCAAGAGGATGga/ga																																																																														
ATM	472	MSKCC	GRCh37	11	108224522	108224523	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0036757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	105	289	1	ENST00000278616.4:c.8701_8702delinsTT	p.Pro2901Phe	p.P2901F	ENST00000278616	NM_000051.3	2901	CCt/TTt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005728	150005728	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0036757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	34	293	0	ENST00000253339.5:c.497G>C	p.Gly166Ala	p.G166A	ENST00000253339		166	gGg/gCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	201	348	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	48	181	0	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920434	114920434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	173	431	0	ENST00000543371.1:c.1375T>C	p.Trp459Arg	p.W459R	ENST00000543371	NM_001198531.1	459	Tgg/Cgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	112	294	0				ENST00000310581	NM_198253.2																																																																																
CSDE1	7812	MSKCC	GRCh37	1	115276456	115276456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	158	537	0	ENST00000438362.2:c.872T>C	p.Val291Ala	p.V291A	ENST00000438362	NM_001242891.1	291	gTc/gCc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911621	114911621	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	152	332	0	ENST00000543371.1:c.1139T>A	p.Ile380Asn	p.I380N	ENST00000543371	NM_001198531.1	380	aTc/aAc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212483957	212483957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	23	443	0	ENST00000342788.4:c.2246C>T	p.Ala749Val	p.A749V	ENST00000342788	NM_005235.2	749	gCt/gTt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871197	35871197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200373233		P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	93	277	1	ENST00000303115.3:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000303115	NM_002185.3	140	cGg/cAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020536	69020536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	469	469	0	ENST00000288368.4:c.2908C>T	p.His970Tyr	p.H970Y	ENST00000288368	NM_024870.2	970	Cat/Tat																																																																														
AR	367	MSKCC	GRCh37	X	66766112	66766112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	61	541	0	ENST00000374690.3:c.1124C>T	p.Pro375Leu	p.P375L	ENST00000374690	NM_000044.3	375	cCg/cTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	82	272	0	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108198428	108198428	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	108	345	0	ENST00000278616.4:c.7032G>A	p.Trp2344Ter	p.W2344*	ENST00000278616	NM_000051.3	2344	tgG/tgA																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0036765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	69	207	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	662	595	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711892	89711892	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	333	476	0	ENST00000371953.3:c.510T>G	p.Ser170Arg	p.S170R	ENST00000371953	NM_000314.4	170	agT/agG																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001523	150001523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	336	467	0	ENST00000253339.5:c.2081G>A	p.Arg694His	p.R694H	ENST00000253339		694	cGt/cAt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707981	43707981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	91	664	0	ENST00000382044.4:c.4900C>T	p.Arg1634Trp	p.R1634W	ENST00000382044	NM_001141980.1	1634	Cgg/Tgg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78831645	78831645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	82	555	0	ENST00000306801.3:c.1454G>A	p.Arg485Gln	p.R485Q	ENST00000306801	NM_020761.2	485	cGa/cAa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645673	12645673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	22	195	0	ENST00000251849.4:c.796G>A	p.Val266Ile	p.V266I	ENST00000251849	NM_002880.3	266	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0036768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	202	586	0	ENST00000269305.4:c.377del	p.Tyr126SerfsTer44	p.Y126Sfs*44	ENST00000269305	NM_001126112.2	126	tAc/tc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439165	52439165	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	148	500	0	ENST00000460680.1:c.1077del	p.Leu361Ter	p.L361*	ENST00000460680	NM_004656.3	359	gcC/gc																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793706	89793706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	97	276	0	ENST00000336032.3:c.775A>G	p.Ile259Val	p.I259V	ENST00000336032	NM_006813.2	259	Att/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574002	7574002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	367	614	1	ENST00000269305.4:c.1025G>C	p.Arg342Pro	p.R342P	ENST00000269305	NM_001126112.2	342	cGa/cCa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390791	139390794	+	frameshift_variant	Frame_Shift_Del	DEL	GACG	GACG	CCA			P-0036787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	191	734	1	ENST00000277541.6:c.7397_7400delinsTGG	p.Thr2466MetfsTer11	p.T2466Mfs*11	ENST00000277541	NM_017617.3	2466	aCGTCg/aTGGg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060786	38060787	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATC			P-0036791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	173	743	0	ENST00000250448.2:c.1202_1203insGATG	p.Ile402MetfsTer14	p.I402Mfs*14	ENST00000250448	NM_004496.3	401	tcc/tcGATGc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073398	8073398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201286989		P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	266	509	1	ENST00000377482.5:c.1261G>A	p.Ala421Thr	p.A421T	ENST00000377482	NM_018948.3	421	Gcc/Acc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187719	11187719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	378	638	0	ENST00000361445.4:c.6178C>T	p.Arg2060Trp	p.R2060W	ENST00000361445	NM_004958.3	2060	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106726	27106727	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	243	527	2	ENST00000324856.7:c.6341dup	p.Gln2115AlafsTer35	p.Q2115Afs*35	ENST00000324856	NM_006015.4	2113	tcc/tCcc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748074	72748074	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	270	437	0	ENST00000357731.5:c.104G>T	p.Gly35Val	p.G35V	ENST00000357731	NM_173808.2	35	gGa/gTa																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695911	117695911	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	340	594	2	ENST00000369458.3:c.526del	p.Gln176SerfsTer26	p.Q176Sfs*26	ENST00000369458	NM_024626.3	176	Cag/ag																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63760050	63760050	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs201273744		P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	155	366	0	ENST00000279873.7:c.703A>T	p.Ile235Leu	p.I235L	ENST00000279873	NM_032199.2	235	Ata/Tta																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	120	246	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925711	114925711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	171	533	2	ENST00000543371.1:c.1789G>A	p.Val597Ile	p.V597I	ENST00000543371	NM_001198531.1	597	Gtc/Atc																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	403	680	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64132821	64132821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	314	625	0	ENST00000334205.4:c.955C>T	p.Arg319Trp	p.R319W	ENST00000334205	NM_003942.2	319	Cgg/Tgg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	128	296	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514076	69514076	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	66	556	0	ENST00000294312.3:c.605T>C	p.Leu202Pro	p.L202P	ENST00000294312	NM_005117.2	202	cTt/cCt																																																																														
PGR	5241	MSKCC	GRCh37	11	100922169	100922169	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	97	388	0	ENST00000325455.5:c.2343T>A	p.Asp781Glu	p.D781E	ENST00000325455	NM_001202474.3	781	gaT/gaA																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246567	46246567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	100	202	0	ENST00000334344.6:c.4661T>C	p.Val1554Ala	p.V1554A	ENST00000334344	NM_152641.2	1554	gTt/gCt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416133	49416133	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	72	371	0	ENST00000301067.7:c.16342C>T	p.Arg5448Ter	p.R5448*	ENST00000301067	NM_003482.3	5448	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427394	49427395	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	168	671	0	ENST00000301067.7:c.11093dup	p.Phe3699LeufsTer14	p.F3699Lfs*14	ENST00000301067	NM_003482.3	3698	ggc/ggGc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57857871	57857871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	140	445	0	ENST00000228682.2:c.190G>A	p.Glu64Lys	p.E64K	ENST00000228682	NM_005269.2	64	Gag/Aag																																																																														
SETD8	387893	MSKCC	GRCh37	12	123879801	123879801	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	441	394	0	ENST00000330479.4:c.502del	p.Arg168GlufsTer39	p.R168Efs*39	ENST00000330479	NM_020382.3	166	gCc/gc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28959048	28959048	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	189	418	0	ENST00000282397.4:c.2090del	p.Asn697ThrfsTer13	p.N697Tfs*13	ENST00000282397	NM_002019.4	697	aAc/ac																																																																														
RB1	5925	MSKCC	GRCh37	13	48881488	48881489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	150	358	0	ENST00000267163.4:c.219_220dup	p.Ala74GlufsTer4	p.A74Efs*4	ENST00000267163	NM_000321.2	70	-/AG																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061312	38061312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	353	596	0	ENST00000250448.2:c.677A>G	p.Asp226Gly	p.D226G	ENST00000250448	NM_004496.3	226	gAc/gGc																																																																														
B2M	567	MSKCC	GRCh37	15	45007901	45007901	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	164	405	0	ENST00000558401.1:c.346+2T>C		p.X116_splice	ENST00000558401	NM_004048.2	116																																																																															
AXIN1	8312	MSKCC	GRCh37	16	339545	339545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	373	750	0	ENST00000262320.3:c.2357C>T	p.Ala786Val	p.A786V	ENST00000262320	NM_003502.3	786	gCg/gTg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225115	2225116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	414	766	0	ENST00000326181.6:c.1353dup	p.Leu452ThrfsTer28	p.L452Tfs*28	ENST00000326181	NM_032271.2	450	-/A																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	148	341	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645878	67645878	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	229	533	0	ENST00000264010.4:c.806A>C	p.Glu269Ala	p.E269A	ENST00000264010	NM_006565.3	269	gAg/gCg																																																																														
CDH1	999	MSKCC	GRCh37	16	68849662	68849662	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	190	406	0	ENST00000261769.5:c.1565C>T	p.Thr522Ile	p.T522I	ENST00000261769	NM_004360.3	522	aCa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7573943	7573943	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	304	598	0	ENST00000269305.4:c.1084A>C	p.Ser362Arg	p.S362R	ENST00000269305	NM_001126112.2	362	Agc/Cgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	349	649	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29686023	29686023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	129	352	0	ENST00000358273.4:c.8150C>T	p.Pro2717Leu	p.P2717L	ENST00000358273	NM_001042492.2	2717	cCg/cTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37884001	37884001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	168	747	0	ENST00000269571.5:c.3472C>T	p.Pro1158Ser	p.P1158S	ENST00000269571		1158	Cct/Tct																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	274	472	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	307	594	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56339086	56339086	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	30	45	0	ENST00000348428.3:c.209+2T>C		p.X70_splice	ENST00000348428	NM_006785.3	70																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2189768	2189768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	368	638	0	ENST00000398665.3:c.238C>T	p.Arg80Cys	p.R80C	ENST00000398665	NM_032482.2	80	Cgt/Tgt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207618	2207618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	171	626	1	ENST00000398665.3:c.902G>A	p.Gly301Asp	p.G301D	ENST00000398665	NM_032482.2	301	gGc/gAc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216596	2216596	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	418	714	0	ENST00000398665.3:c.2240T>C	p.Val747Ala	p.V747A	ENST00000398665	NM_032482.2	747	gTg/gCg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5218539	5218539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	419	742	2	ENST00000357368.4:c.3940C>T	p.Arg1314Cys	p.R1314C	ENST00000357368	NM_002850.3	1314	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308382	15308383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	120	600	1	ENST00000263388.2:c.125dup	p.Cys43LeufsTer32	p.C43Lfs*32	ENST00000263388	NM_000435.2	42	cct/ccCt																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256769	19256769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	206	383	2	ENST00000162023.5:c.944del	p.Pro315GlnfsTer?	p.P315Qfs*?	ENST00000162023		315	cCa/ca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218350	36218350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	385	744	0	ENST00000222270.7:c.4129G>A	p.Glu1377Lys	p.E1377K	ENST00000222270	NM_014727.1	1377	Gag/Aag																																																																														
ERF	2077	MSKCC	GRCh37	19	42752786	42752786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	402	693	0	ENST00000222329.4:c.1478G>A	p.Arg493His	p.R493H	ENST00000222329	NM_006494.2	493	cGc/cAc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45873450	45873450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	136	482	0	ENST00000391945.4:c.46T>C	p.Tyr16His	p.Y16H	ENST00000391945	NM_000400.3	16	Tac/Cac																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905061	50905061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	290	532	1	ENST00000440232.2:c.347delC	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	115	Ccc/cc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	275	545	13	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	96	223	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31380578	31380578	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	155	287	0	ENST00000328111.2:c.1066+2T>C		p.X356_splice	ENST00000328111	NM_006892.3	356																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44514831	44514831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	270	474	1	ENST00000291552.4:c.416C>T	p.Pro139Leu	p.P139L	ENST00000291552	NM_006758.2	139	cCg/cTg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713883	30713883	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143095746		P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	247	534	2	ENST00000359013.4:c.1283G>A	p.Arg428His	p.R428H	ENST00000359013	NM_001024847.2	428	cGt/cAt																																																																														
RHOA	387	MSKCC	GRCh37	3	49405934	49405935	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	95	529	1	ENST00000418115.1:c.203_204delinsAA	p.Arg68Gln	p.R68Q	ENST00000418115	NM_001664.2	68	cGC/cAA																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933804	49933804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	308	619	0	ENST00000296474.3:c.2473C>T	p.Arg825Cys	p.R825C	ENST00000296474	NM_002447.2	825	Cgc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643784	52643784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	323	671	2	ENST00000394830.3:c.2112G>T	p.Met704Ile	p.M704I	ENST00000394830	NM_018313.4	704	atG/atT																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427690	72427690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	217	393	0	ENST00000477973.2:c.798G>A	p.Arg267His	p.R267H	ENST00000477973	NM_012234.5	267	cGc/cAc																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664760	138664761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	116	172	0	ENST00000330315.3:c.804dup	p.Gly269ArgfsTer265	p.G269Rfs*265	ENST00000330315	NM_023067.3	268	-/C																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539129	187539129	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	325	574	0	ENST00000441802.2:c.8611A>G	p.Thr2871Ala	p.T2871A	ENST00000441802	NM_005245.3	2871	Act/Gct																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564696	86564696	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	117	596	0	ENST00000274376.6:c.428T>C	p.Leu143Pro	p.L143P	ENST00000274376	NM_002890.2	143	cTg/cCg																																																																														
APC	324	MSKCC	GRCh37	5	112176653	112176653	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140073303		P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	108	283	0	ENST00000257430.4:c.5362C>T	p.Arg1788Cys	p.R1788C	ENST00000257430	NM_000038.5	1788	Cgt/Tgt																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803064	32803064	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	274	572	0	ENST00000374899.4:c.812T>G	p.Leu271Arg	p.L271R	ENST00000374899	NM_018833.2	271	cTc/cGc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	260	462	3	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508235	106508235	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	135	243	0	ENST00000359195.3:c.229C>T	p.Arg77Ter	p.R77*	ENST00000359195	NM_002649.2	77	Cga/Tga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945013	151945013	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	15	82	0	ENST00000262189.6:c.2506del	p.Ser836LeufsTer18	p.S836Lfs*18	ENST00000262189	NM_170606.2	836	Tct/ct																																																																														
FANCC	2176	MSKCC	GRCh37	9	97933361	97933361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	148	391	1	ENST00000289081.3:c.521G>A	p.Arg174Gln	p.R174Q	ENST00000289081	NM_000136.2	174	cGa/cAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231322	98231322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	312	618	0	ENST00000331920.6:c.1961C>T	p.Thr654Met	p.T654M	ENST00000331920	NM_000264.3	654	aCg/aTg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249318	110249318	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	457	923	0	ENST00000374672.4:c.1255A>G	p.Thr419Ala	p.T419A	ENST00000374672	NM_004235.4	419	Acc/Gcc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	320	604	5	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922024	39922024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	57	369	0	ENST00000378444.4:c.4148A>G	p.Tyr1383Cys	p.Y1383C	ENST00000378444	NM_001123385.1	1383	tAc/tGc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	257	257	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0036806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	105	582	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
STK40	83931	MSKCC	GRCh37	1	36820014	36820014	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	89	624	0	ENST00000373129.3:c.574A>C	p.Asn192His	p.N192H	ENST00000373129	NM_032017.1	192	Aat/Cat																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81927340	81927340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	100	606	0	ENST00000359376.3:c.1013G>A	p.Ser338Asn	p.S338N	ENST00000359376	NM_002661.3	338	aGc/aAc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202704	128202704	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0036806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	113	692	0	ENST00000341105.2:c.1016T>A	p.Leu339Gln	p.L339Q	ENST00000341105	NM_032638.4	339	cTg/cAg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923617	131923617	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0036806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	33	243	0	ENST00000265335.6:c.891del	p.Gln298LysfsTer7	p.Q298Kfs*7	ENST00000265335		296	gTt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	356	619	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48941628	48941628	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	304	217	0	ENST00000267163.4:c.940-2A>G		p.X314_splice	ENST00000267163	NM_000321.2	314																																																																															
POLE	5426	MSKCC	GRCh37	12	133220467	133220467	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146711942		P-0036807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	153	560	1	ENST00000320574.5:c.4246G>A	p.Ala1416Thr	p.A1416T	ENST00000320574	NM_006231.2	1416	Gct/Act																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874542	155874542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	264	574	0	ENST00000368323.3:c.217A>G	p.Ile73Val	p.I73V	ENST00000368323	NM_006912.5	73	Att/Gtt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691119	18691119	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	197	437	0	ENST00000266497.5:c.3230A>T	p.Glu1077Val	p.E1077V	ENST00000266497		1077	gAg/gTg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184963	32184963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	46	610	0	ENST00000375023.3:c.1705C>A	p.Gln569Lys	p.Q569K	ENST00000375023	NM_004557.3	569	Cag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	186	425	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	64	358	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	64	358	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	64	358	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	89	648	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105748	27105748	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	37	374	0	ENST00000324856.7:c.5359G>T	p.Glu1787Ter	p.E1787*	ENST00000324856	NM_006015.4	1787	Gag/Tag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115110005	115110005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	32	637	1	ENST00000257566.3:c.1873C>A	p.Arg625Ser	p.R625S	ENST00000257566	NM_016569.3	625	Cgc/Agc																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99808304	99808304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	17	305	0	ENST00000280892.6:c.385C>T	p.Arg129Trp	p.R129W	ENST00000280892	NM_001130678.1	129	Cgg/Tgg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190656563	190656563	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	17	193	0	ENST00000441310.2:c.28C>T	p.Arg10Ter	p.R10*	ENST00000441310	NM_000534.4	10	Cga/Tga																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64288369	64288369	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	59	284	0	ENST00000370651.3:c.133A>G	p.Ile45Val	p.I45V	ENST00000370651	NM_003463.4	45	Ata/Gta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106937	27106937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	22	481	0	ENST00000324856.7:c.6548G>T	p.Arg2183Leu	p.R2183L	ENST00000324856	NM_006015.4	2183	cGt/cTt																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743653	46743653	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	51	654	1	ENST00000371975.4:c.2033+1G>A		p.X678_splice	ENST00000371975	NM_003579.3	678																																																																															
RET	5979	MSKCC	GRCh37	10	43619153	43619153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	57	521	0	ENST00000355710.3:c.2836A>G	p.Thr946Ala	p.T946A	ENST00000355710	NM_020975.4	946	Acc/Gcc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	38	366	0	ENST00000377767.4:c.1435G>A	p.Asp479Asn	p.D479N	ENST00000377767	NM_014953.3	479	Gac/Aac																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609751	81609751	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	34	471	0	ENST00000298171.2:c.1349G>C	p.Arg450Pro	p.R450P	ENST00000298171	NM_000369.2	450	cGc/cCc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868354	56868354	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	25	282	0	ENST00000308159.5:c.1737G>T	p.Glu579Asp	p.E579D	ENST00000308159	NM_014669.4	579	gaG/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577065	7577065	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	45	739	0	ENST00000269305.4:c.873del	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	291	aaG/aa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610177	10610177	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	59	701	0	ENST00000171111.5:c.533A>T	p.Gln178Leu	p.Q178L	ENST00000171111	NM_203500.1	178	cAg/cTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390919	89390919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	45	353	0	ENST00000336596.2:c.985C>A	p.Pro329Thr	p.P329T	ENST00000336596	NM_005233.5	329	Cca/Aca																																																																														
TP63	8626	MSKCC	GRCh37	3	189456563	189456563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	44	400	0	ENST00000264731.3:c.324G>C	p.Trp108Cys	p.W108C	ENST00000264731	NM_003722.4	108	tgG/tgC																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53244010	53244011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	57	510	0	ENST00000375401.3:c.982_983insT	p.Arg328LeufsTer8	p.R328Lfs*8	ENST00000375401	NM_004187.3	328	cgg/cTgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	35	436	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	48	477	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467047	25467047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	38	417	1	ENST00000264709.3:c.1828G>A	p.Ala610Thr	p.A610T	ENST00000264709	NM_175629.2	610	Gct/Act																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166815	32166815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	38	556	0	ENST00000375023.3:c.4423C>T	p.Arg1475Cys	p.R1475C	ENST00000375023	NM_004557.3	1475	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	494	559	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163309223	163309223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	43	458	0	ENST00000271452.3:c.562C>G	p.Gln188Glu	p.Q188E	ENST00000271452	NM_145697.2	188	Cag/Gag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729793	41729793	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	96	387	1	ENST00000242208.4:c.736C>T	p.Gln246Ter	p.Q246*	ENST00000242208	NM_002192.2	246	Cag/Tag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932289	39932289	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	334	844	0	ENST00000378444.4:c.2310del	p.Ser771AlafsTer15	p.S771Afs*15	ENST00000378444	NM_001123385.1	770	acT/ac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861162	57861162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	144	455	0	ENST00000228682.2:c.959C>T	p.Thr320Met	p.T320M	ENST00000228682	NM_005269.2	320	aCg/aTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094928	11094929	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0036825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	164	649	1	ENST00000344626.4:c.101_102delinsGT	p.Pro34Arg	p.P34R	ENST00000344626	NM_003072.3	34	cCC/cGT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211658	36211658	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	102	452	0	ENST00000222270.7:c.1409G>C	p.Gly470Ala	p.G470A	ENST00000222270	NM_014727.1	470	gGc/gCc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385100	41385100	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	107	527	0	ENST00000373198.4:c.859+2T>C		p.X287_splice	ENST00000373198	NM_133170.3	287																																																																															
FLT4	2324	MSKCC	GRCh37	5	180057230	180057230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	81	478	0	ENST00000261937.6:c.508C>T	p.Arg170Cys	p.R170C	ENST00000261937	NM_182925.4	170	Cgc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	111	407	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620566	52620566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	161	440	0	ENST00000394830.3:c.3187C>T	p.Arg1063Trp	p.R1063W	ENST00000394830	NM_018313.4	1063	Cgg/Tgg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724517	43724518	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0036827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	194	802	0	ENST00000382044.4:c.3549_3550del	p.Cys1183Ter	p.C1183*	ENST00000382044	NM_001141980.1	1183	tgTGag/tgag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023905	27023905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	10	76	0	ENST00000324856.7:c.1011G>A	p.Trp337Ter	p.W337*	ENST00000324856	NM_006015.4	337	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578540	7578542	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	CA			P-0036828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	351	795	2	ENST00000269305.4:c.388_390delinsTG	p.Leu130Ter	p.L130*	ENST00000269305	NM_001126112.2	130	CTC/TG																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42860368	42860368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	61	670	0	ENST00000398585.3:c.509G>A	p.Cys170Tyr	p.C170Y	ENST00000398585	NM_001135099.1	170	tGt/tAt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134275	11134275	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	157	472	0	ENST00000344626.4:c.2941A>C	p.Lys981Gln	p.K981Q	ENST00000344626	NM_003072.3	981	Aag/Cag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	66	304	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	36	363	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	202	615	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120465373	120465373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	98	494	0	ENST00000256646.2:c.4888C>T	p.Arg1630Cys	p.R1630C	ENST00000256646	NM_024408.3	1630	Cgc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	120	494	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139831	55139831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	118	375	1	ENST00000257290.5:c.1492G>A	p.Ala498Thr	p.A498T	ENST00000257290	NM_006206.4	498	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092815	27092815	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	49	501	0	ENST00000324856.7:c.2840delC	p.Pro947HisfsTer21	p.P947Hfs*21	ENST00000324856	NM_006015.4	946	Ccc/cc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914070	32914070	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	29	448	0	ENST00000380152.3:c.5583delA	p.Val1862Ter	p.V1862*	ENST00000380152		1860	Aaa/aa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040630	47040630	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	68	419	0	ENST00000329236.7:c.1031A>G	p.Glu344Gly	p.E344G	ENST00000329236	NM_001204466.1	344	gAg/gGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	25	477	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	44	485	0	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																														
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	68	526	0	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																														
JUN	3725	MSKCC	GRCh37	1	59247894	59247894	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	209	842	0	ENST00000371222.2:c.849del	p.Val284Ter	p.V284*	ENST00000371222	NM_002228.3	283	aaA/aa																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841231	15841236	+	inframe_deletion	In_Frame_Del	DEL	AGCCGG	AGCCGG	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	54	328	0	ENST00000307771.7:c.1338_1343delGAGCCG	p.Ser447_Arg448del	p.S447_R448del	ENST00000307771	NM_005089.3	439	AGCCGG/-																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	88	449	0	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																														
ATM	472	MSKCC	GRCh37	11	108196143	108196143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	85	501	0	ENST00000278616.4:c.6679C>T	p.Arg2227Cys	p.R2227C	ENST00000278616	NM_000051.3	2227	Cgc/Tgc																																																																														
FH	2271	MSKCC	GRCh37	1	241667492	241667492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	18	247	0	ENST00000366560.3:c.958G>A	p.Ala320Thr	p.A320T	ENST00000366560	NM_000143.3	320	Gct/Act																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346270	89346270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	57	351	0	ENST00000301030.4:c.6680C>T	p.Pro2227Leu	p.P2227L	ENST00000301030	NM_001256183.1	2227	cCg/cTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291084	10291084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	55	648	0	ENST00000340748.4:c.387del	p.Lys130AsnfsTer129	p.K130Nfs*129	ENST00000340748		129	ccC/cc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348443	89348443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	57	701	1	ENST00000301030.4:c.4507G>A	p.Ala1503Thr	p.A1503T	ENST00000301030	NM_001256183.1	1503	Gcc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	37	694	0	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915852	127915852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	73	479	0	ENST00000373547.4:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000373547	NM_002721.4	210	cGa/cAa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120043	70120043	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	14	39	0	ENST00000245479.2:c.1049del	p.Pro350HisfsTer33	p.P350Hfs*33	ENST00000245479	NM_000346.3	349	Ccc/cc																																																																														
ARAF	369	MSKCC	GRCh37	X	47424713	47424713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	40	545	1	ENST00000377045.4:c.521G>A	p.Arg174His	p.R174H	ENST00000377045	NM_001654.4	174	cGc/cAc																																																																														
MSI2	124540	MSKCC	GRCh37	17	55693419	55693419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	70	572	0	ENST00000284073.2:c.626C>T	p.Ala209Val	p.A209V	ENST00000284073	NM_138962.2	209	gCg/gTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322882	31322882	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	44	535	0	ENST00000412585.2:c.1012+2T>C		p.X338_splice	ENST00000412585	NM_005514.6	338																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323268	31323268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	28	279	1	ENST00000412585.2:c.721T>C	p.Trp241Arg	p.W241R	ENST00000412585	NM_005514.6	241	Tgg/Cgg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11303204	11303204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	102	514	1	ENST00000361445.4:c.1379G>A	p.Arg460Gln	p.R460Q	ENST00000361445	NM_004958.3	460	cGa/cAa																																																																														
CDC42	998	MSKCC	GRCh37	1	22412996	22412996	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	13	174	0	ENST00000344548.3:c.247delT	p.Ser83GlnfsTer11	p.S83Qfs*11	ENST00000344548	NM_001039802.1	81	tgT/tg																																																																														
SDHC	6391	MSKCC	GRCh37	1	161310397	161310397	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	32	514	0	ENST00000367975.2:c.193A>G	p.Met65Val	p.M65V	ENST00000367975	NM_003001.3	65	Atg/Gtg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625161	69625161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	131	642	0	ENST00000334134.2:c.632G>A	p.Arg211Gln	p.R211Q	ENST00000334134	NM_005247.2	211	cGg/cAg																																																																														
RAD52	5893	MSKCC	GRCh37	12	1040432	1040432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	109	663	0	ENST00000358495.3:c.140T>G	p.Leu47Arg	p.L47R	ENST00000358495	NM_134424.2	47	cTg/cGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445222	49445222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	51	747	2	ENST00000301067.7:c.2244G>T	p.Glu748Asp	p.E748D	ENST00000301067	NM_003482.3	748	gaG/gaT																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514713	103514713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	25	304	1	ENST00000355739.4:c.1214C>T	p.Ala405Val	p.A405V	ENST00000355739	NM_000123.3	405	gCt/gTt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678367	88678367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	62	814	0	ENST00000360948.2:c.1169C>T	p.Thr390Ile	p.T390I	ENST00000360948	NM_001012338.2	390	aCc/aTc																																																																														
CDH1	999	MSKCC	GRCh37	16	68849586	68849586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	67	553	1	ENST00000261769.5:c.1489G>A	p.Glu497Lys	p.E497K	ENST00000261769	NM_004360.3	497	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822585	72822586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	57	507	0	ENST00000268489.5:c.9588_9589dup	p.Gln3197ProfsTer45	p.Q3197Pfs*45	ENST00000268489	NM_006885.3	3197	cag/cCCag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993508	72993509	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	85	596	0	ENST00000268489.5:c.536dup	p.Lys180GlnfsTer30	p.K180Qfs*30	ENST00000268489	NM_006885.3	179	ggc/ggGc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349045	89349045	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	159	838	0	ENST00000301030.4:c.3905A>C	p.Glu1302Ala	p.E1302A	ENST00000301030	NM_001256183.1	1302	gAg/gCg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573564	48573564	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	23	276	0	ENST00000342988.3:c.153del	p.Asp52MetfsTer6	p.D52Mfs*6	ENST00000342988	NM_005359.5	50	Aaa/aa																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19260057	19260057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	118	711	2	ENST00000162023.5:c.236G>A	p.Arg79His	p.R79H	ENST00000162023		79	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222937	36222938	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	84	799	1	ENST00000222270.7:c.5572dup	p.Arg1858ProfsTer114	p.R1858Pfs*114	ENST00000222270	NM_014727.1	1856	gcc/gCcc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26029096	26029096	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	39	303	0	ENST00000435504.4:c.252+2T>C		p.X84_splice	ENST00000435504		84																																																																															
XPO1	7514	MSKCC	GRCh37	2	61706017	61706017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	79	654	1	ENST00000401558.2:c.3154C>T	p.Arg1052Cys	p.R1052C	ENST00000401558	NM_003400.3	1052	Cgt/Tgt																																																																														
CASP8	841	MSKCC	GRCh37	2	202149571	202149571	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	79	423	0	ENST00000358485.4:c.1012T>G	p.Phe338Val	p.F338V	ENST00000358485	NM_001080125.1	338	Ttt/Gtt																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204737525	204737525	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	37	248	1	ENST00000302823.3:c.662C>A	p.Pro221His	p.P221H	ENST00000302823	NM_005214.4	221	cCc/cAc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46277816	46277816	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	90	358	0	ENST00000371998.3:c.3614T>G	p.Val1205Gly	p.V1205G	ENST00000371998		1205	gTg/gGg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134885846	134885846	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	56	380	0	ENST00000398015.3:c.1757G>A	p.Arg586Gln	p.R586Q	ENST00000398015	NM_004441.4	586	cGa/cAa																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430402	181430402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	156	582	1	ENST00000325404.1:c.254C>T	p.Thr85Met	p.T85M	ENST00000325404	NM_003106.3	85	aCg/aTg																																																																														
BCL6	604	MSKCC	GRCh37	3	187447010	187447010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	151	705	0	ENST00000232014.4:c.1183C>T	p.Pro395Ser	p.P395S	ENST00000232014	NM_001130845.1	395	Cct/Tct																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803346	1803346	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	94	616	0	ENST00000260795.2:c.616-1G>A		p.X206_splice	ENST00000260795		206																																																																															
FAT1	2195	MSKCC	GRCh37	4	187524141	187524141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	111	403	0	ENST00000441802.2:c.11398C>A	p.Pro3800Thr	p.P3800T	ENST00000441802	NM_005245.3	3800	Cct/Act																																																																														
TERT	7015	MSKCC	GRCh37	5	1295023	1295023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	33	46	0	ENST00000310581.5:c.82G>A	p.Val28Met	p.V28M	ENST00000310581	NM_198253.2	28	Gtg/Atg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176618957	176618957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	63	503	1	ENST00000439151.2:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000439151	NM_022455.4	334	Cgc/Tgc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911080	29911081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	178	707	0	ENST00000376809.5:c.380dup	p.Ser129ValfsTer48	p.S129Vfs*48	ENST00000376809	NM_002116.7	127	gtg/gTtg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020438	69020438	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	140	590	0	ENST00000288368.4:c.2810A>G	p.Asn937Ser	p.N937S	ENST00000288368	NM_024870.2	937	aAc/aGc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331686	8331686	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	58	440	0	ENST00000356435.5:c.5430G>T	p.Glu1810Asp	p.E1810D	ENST00000356435		1810	gaG/gaT																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907095	101907095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	49	369	0	ENST00000374994.4:c.1055T>C	p.Leu352Ser	p.L352S	ENST00000374994	NM_004612.2	352	tTa/tCa																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101910053	101910053	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	37	238	0	ENST00000374994.4:c.1374del	p.Trp458CysfsTer7	p.W458Cfs*7	ENST00000374994	NM_004612.2	458	tGg/tg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760804	133760804	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs138480160		P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	98	585	0	ENST00000318560.5:c.3127A>G	p.Ile1043Val	p.I1043V	ENST00000318560	NM_005157.4	1043	Atc/Gtc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820633	44820633	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	34	359	0	ENST00000377967.4:c.333del	p.Ala112HisfsTer68	p.A112Hfs*68	ENST00000377967	NM_021140.2	110	ccA/cc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045778	47045778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	138	692	2	ENST00000329236.7:c.2425C>T	p.Pro809Ser	p.P809S	ENST00000329236	NM_001204466.1	809	Cct/Tct																																																																														
AR	367	MSKCC	GRCh37	X	66863117	66863117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	42	642	1	ENST00000374690.3:c.1636C>A	p.His546Asn	p.H546N	ENST00000374690	NM_000044.3	546	Cat/Aat																																																																														
MED12	9968	MSKCC	GRCh37	X	70353058	70353058	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	40	421	0	ENST00000374080.3:c.4613A>G	p.Asn1538Ser	p.N1538S	ENST00000374080		1538	aAc/aGc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549404	21549404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	237	504	0	ENST00000382592.4:c.2872C>T	p.Arg958Cys	p.R958C	ENST00000382592	NM_014572.2	958	Cgc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803592	1803592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs949596399		P-0036845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	150	674	1	ENST00000260795.2:c.770C>T	p.Ala257Val	p.A257V	ENST00000260795		257	gCg/gTg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004742	150004742	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	139	609	0	ENST00000253339.5:c.1483C>T	p.Gln495Ter	p.Q495*	ENST00000253339		495	Caa/Taa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004877	150004877	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	28	544	0	ENST00000253339.5:c.1348G>C	p.Glu450Gln	p.E450Q	ENST00000253339		450	Gaa/Caa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005333	150005333	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	31	610	0	ENST00000253339.5:c.892G>T	p.Glu298Ter	p.E298*	ENST00000253339		298	Gag/Tag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005366	150005366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	53	656	0	ENST00000253339.5:c.859C>T	p.Arg287Ter	p.R287*	ENST00000253339		287	Cga/Tga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023009	150023010	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0036845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	35	728	0	ENST00000253339.5:c.253_254del	p.Leu85AlafsTer6	p.L85Afs*6	ENST00000253339		85	CTg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	201	760	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	69	340	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584708	48584708	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	119	417	0	ENST00000342988.3:c.788-2A>T		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023903	27023904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	30	111	0	ENST00000324856.7:c.1015dup	p.Ala339GlyfsTer61	p.A339Gfs*61	ENST00000324856	NM_006015.4	337	tgg/tGgg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	245912913	245912913	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	150	459	0	ENST00000388985.4:c.1239T>G	p.Asp413Glu	p.D413E	ENST00000388985		413	gaT/gaG																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623790	28623790	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs200102131		P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	42	620	0	ENST00000241453.7:c.864A>C	p.Glu288Asp	p.E288D	ENST00000241453	NM_004119.2	288	gaA/gaC																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528147	157528147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	143	609	1	ENST00000346085.5:c.5872G>A	p.Val1958Met	p.V1958M	ENST00000346085	NM_020732.3	1958	Gtg/Atg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945049	151945049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	24	641	1	ENST00000262189.6:c.2470G>T	p.Gly824Cys	p.G824C	ENST00000262189	NM_170606.2	824	Ggc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	182	498	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163298694	163298694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	680	554	0	ENST00000271452.3:c.334C>T	p.Pro112Ser	p.P112S	ENST00000271452	NM_145697.2	112	Cca/Tca																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988334	36988334	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	134	414	1	ENST00000354822.5:c.319C>T	p.Gln107Ter	p.Q107*	ENST00000354822	NM_001079668.2	107	Cag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100971	41100971	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	90	551	0	ENST00000373198.4:c.1385T>C	p.Leu462Pro	p.L462P	ENST00000373198	NM_133170.3	462	cTc/cCc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747970	41747970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	53	135	0	ENST00000226382.2:c.799G>A	p.Gly267Arg	p.G267R	ENST00000226382	NM_003924.3	267	Ggg/Agg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637362	47637362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	203	738	0	ENST00000233146.2:c.496G>A	p.Val166Met	p.V166M	ENST00000233146	NM_000251.2	166	Gtg/Atg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441324	52441328	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTC	GGCTC	-			P-0036871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	117	545	0	ENST00000460680.1:c.442_446del	p.Glu148ThrfsTer5	p.E148Tfs*5	ENST00000460680	NM_004656.3	148	GAGCCa/a																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	94	460	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	39	427	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393701	139393701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	158	596	0	ENST00000277541.6:c.5945G>A	p.Arg1982Gln	p.R1982Q	ENST00000277541	NM_017617.3	1982	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0036875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	173	520	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44949056	44949056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	160	281	0	ENST00000377967.4:c.3617C>T	p.Pro1206Leu	p.P1206L	ENST00000377967	NM_021140.2	1206	cCa/cTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	30	499	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	40	575	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0036878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	48	547	1	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	9	304	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67670755	67670755	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0036878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	30	358	1	ENST00000264010.4:c.1999+1G>A		p.X667_splice	ENST00000264010	NM_006565.3	667																																																																															
FLT1	2321	MSKCC	GRCh37	13	29041214	29041214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	43	609	0	ENST00000282397.4:c.214G>A	p.Glu72Lys	p.E72K	ENST00000282397	NM_002019.4	72	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	67	350	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	67	350	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	45	712	0	ENST00000263967.3:c.1638G>C	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	67	350	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CYLD	1540	MSKCC	GRCh37	16	50830331	50830331	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	54	604	1	ENST00000398568.2:c.2775del	p.Arg926GlyfsTer24	p.R926Gfs*24	ENST00000398568	NM_001042412.1	925	tCc/tc																																																																														
NF1	4763	MSKCC	GRCh37	17	29508797	29508797	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	20	511	0	ENST00000358273.4:c.724A>T	p.Met242Leu	p.M242L	ENST00000358273	NM_001042492.2	242	Atg/Ttg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	356	361	3	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	196	287	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	175	368	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	440	415	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	377	345	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	293	264	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	349	372	8	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856065	111856065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	102	191	0	ENST00000341259.2:c.116G>A	p.Arg39Gln	p.R39Q	ENST00000341259	NM_005475.2	39	cGg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144049	11144051	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	352	405	0	ENST00000344626.4:c.3634_3636del	p.Glu1212del	p.E1212del	ENST00000344626	NM_003072.3	1210	gtGGAg/gtg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	341	421	3	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
AR	367	MSKCC	GRCh37	X	66766424	66766424	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	92	46	0	ENST00000374690.3:c.1440del	p.Tyr481ThrfsTer29	p.Y481Tfs*29	ENST00000374690	NM_000044.3	479	gCc/gc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286237	66286238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	141	322	0	ENST00000273854.3:c.1448dup	p.Asn483LysfsTer21	p.N483Kfs*21	ENST00000273854	NM_004439.5	483	aac/aaAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472603	88472603	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	257	341	0	ENST00000360948.2:c.1952T>G	p.Leu651Arg	p.L651R	ENST00000360948	NM_001012338.2	651	cTg/cGg																																																																														
CIC	23152	MSKCC	GRCh37	19	42795609	42795609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	443	465	2	ENST00000575354.2:c.2694del	p.Ala900ProfsTer24	p.A900Pfs*24	ENST00000575354	NM_015125.3	897	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	371	395	0	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528372	157528372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	422	423	1	ENST00000346085.5:c.6097G>A	p.Gly2033Arg	p.G2033R	ENST00000346085	NM_020732.3	2033	Ggg/Agg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424178	49424178	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	198	235	0	ENST00000301067.7:c.13884delC	p.Thr4629ProfsTer11	p.T4629Pfs*11	ENST00000301067	NM_003482.3	4628	ccC/cc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368388	225368388	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	276	346	0	ENST00000264414.4:c.1358del	p.Asn453ThrfsTer2	p.N453Tfs*2	ENST00000264414	NM_003590.4	453	aAc/ac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	383	470	1	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	739	382	12	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981903	70981903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	375	410	0	ENST00000276594.2:c.193G>A	p.Ala65Thr	p.A65T	ENST00000276594	NM_024504.3	65	Gcc/Acc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43699735	43699735	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137879443		P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	305	348	0	ENST00000382044.4:c.5780C>T	p.Thr1927Met	p.T1927M	ENST00000382044	NM_001141980.1	1927	aCg/aTg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78428542	78428543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	421	407	0	ENST00000370768.2:c.1256dup	p.Asn419LysfsTer5	p.N419Kfs*5	ENST00000370768	NM_003902.3	419	aat/aaAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18443943	18443943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	211	292	0	ENST00000266497.5:c.916T>C	p.Cys306Arg	p.C306R	ENST00000266497		306	Tgt/Cgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434246	49434247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	501	605	0	ENST00000301067.7:c.7306dup	p.Cys2436LeufsTer13	p.C2436Lfs*13	ENST00000301067	NM_003482.3	2436	tgc/tTgc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112891184	112891184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	200	411	0	ENST00000351677.2:c.518G>A	p.Arg173His	p.R173H	ENST00000351677	NM_002834.3	173	cGc/cAc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708473	43708473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	489	470	0	ENST00000382044.4:c.4823G>A	p.Gly1608Asp	p.G1608D	ENST00000382044	NM_001141980.1	1608	gGc/gAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346637	89346637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	249	290	0	ENST00000301030.4:c.6313G>A	p.Gly2105Ser	p.G2105S	ENST00000301030	NM_001256183.1	2105	Ggc/Agc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864614	37864614	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	198	383	0	ENST00000269571.5:c.266A>G	p.Asn89Ser	p.N89S	ENST00000269571		89	aAc/aGc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763404	59763404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	199	433	0	ENST00000259008.2:c.2698A>G	p.Thr900Ala	p.T900A	ENST00000259008	NM_032043.2	900	Acc/Gcc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533066	63533066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	368	425	0	ENST00000307078.5:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000307078	NM_004655.3	610	Cgg/Tgg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732278	74732279	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	110	179	0	ENST00000359995.5:c.630dup	p.Lys211GlnfsTer4	p.K211Qfs*4	ENST00000359995	NM_001195427.1	210	-/C																																																																														
CIC	23152	MSKCC	GRCh37	19	42795607	42795609	+	frameshift_variant	Frame_Shift_Del	DEL	CAC	CAC	GA			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	443	481	3	ENST00000575354.2:c.2687_2689delinsGA	p.Pro896ArgfsTer28	p.P896Rfs*28	ENST00000575354	NM_015125.3	896	cCACcc/cGAcc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634719	158634719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	264	312	1	ENST00000263640.3:c.467G>A	p.Arg156His	p.R156H	ENST00000263640	NM_001105.4	156	cGc/cAc																																																																														
INHA	3623	MSKCC	GRCh37	2	220437287	220437288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	182	553	3	ENST00000243786.2:c.197dup	p.Phe67LeufsTer7	p.F67Lfs*7	ENST00000243786	NM_002191.3	64	ctg/ctGg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37055922	37055922	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	161	177	0	ENST00000231790.2:c.678-1G>A		p.X226_splice	ENST00000231790	NM_000249.3	226																																																																															
RAD50	10111	MSKCC	GRCh37	5	131978039	131978039	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	320	348	1	ENST00000265335.6:c.3922G>T	p.Gly1308Ter	p.G1308*	ENST00000265335		1308	Gga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710638	117710638	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	211	269	0	ENST00000368508.3:c.1634T>C	p.Leu545Ser	p.L545S	ENST00000368508	NM_002944.2	545	tTg/tCg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845645	151845647	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	382	373	0	ENST00000262189.6:c.13365_13367del	p.Arg4456del	p.R4456del	ENST00000262189	NM_170606.2	4455	agGAGa/aga																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020373	69020373	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	368	378	0	ENST00000288368.4:c.2745G>A	p.Trp915Ter	p.W915*	ENST00000288368	NM_024870.2	915	tgG/tgA																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417562	139417562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	422	457	1	ENST00000277541.6:c.482C>T	p.Ser161Phe	p.S161F	ENST00000277541	NM_017617.3	161	tCc/tTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0036884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	234	376	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	250	478	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
KIT	3815	MSKCC	GRCh37	4	55599332	55599332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	188	556	0	ENST00000288135.5:c.2458G>T	p.Asp820Tyr	p.D820Y	ENST00000288135	NM_000222.2	820	Gat/Tat																																																																														
KIT	3815	MSKCC	GRCh37	4	55599333	55599333	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	624	554	2	ENST00000288135.5:c.2459A>T	p.Asp820Val	p.D820V	ENST00000288135	NM_000222.2	820	gAt/gTt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	211	388	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151835975	151835975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	282	540	1	ENST00000262189.6:c.14549C>T	p.Ser4850Leu	p.S4850L	ENST00000262189	NM_170606.2	4850	tCg/tTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69009294	69009294	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	124	577	1	ENST00000288368.4:c.2411A>T	p.Lys804Met	p.K804M	ENST00000288368	NM_024870.2	804	aAg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	705	484	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578445	7578450	+	inframe_deletion	In_Frame_Del	DEL	ATGGCC	ATGGCC	-			P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	372	663	0	ENST00000269305.4:c.480_485del	p.Met160_Ala161del	p.M160_A161del	ENST00000269305	NM_001126112.2	160	atGGCCATc/atc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488730	212488730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	333	579	0	ENST00000342788.4:c.2119C>A	p.Gln707Lys	p.Q707K	ENST00000342788	NM_005235.2	707	Caa/Aaa																																																																														
WT1	7490	MSKCC	GRCh37	11	32421569	32421569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	208	504	1	ENST00000332351.3:c.1023C>A	p.Ser341Arg	p.S341R	ENST00000332351	NM_024426.4	341	agC/agA																																																																														
XPO1	7514	MSKCC	GRCh37	2	61727007	61727007	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	63	509	0	ENST00000401558.2:c.431A>C	p.Lys144Thr	p.K144T	ENST00000401558	NM_003400.3	144	aAa/aCa																																																																														
BARD1	580	MSKCC	GRCh37	2	215593546	215593546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	49	367	0	ENST00000260947.4:c.2188C>G	p.Gln730Glu	p.Q730E	ENST00000260947	NM_000465.2	730	Cag/Gag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321361	1321361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	129	456	0	ENST00000381566.1:c.394G>A	p.Asp132Asn	p.D132N	ENST00000381566		132	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0036909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	236	767	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	231	610	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	160	426	0	ENST00000275493.2:c.2240T>C	p.Leu747Ser	p.L747S	ENST00000275493	NM_005228.3	747	tTa/tCa																																																																														
RARA	5914	MSKCC	GRCh37	17	38510648	38510648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	238	635	1	ENST00000254066.5:c.902G>T	p.Gly301Val	p.G301V	ENST00000254066	NM_000964.3	301	gGc/gTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	152	387	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89809209	89809209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0036910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	107	603	0	ENST00000389301.3:c.3764A>C	p.Glu1255Ala	p.E1255A	ENST00000389301	NM_000135.2	1255	gAg/gCg																																																																														
AXL	558	MSKCC	GRCh37	19	41743868	41743868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	198	745	0	ENST00000301178.4:c.803G>T	p.Gly268Val	p.G268V	ENST00000301178	NM_021913.4	268	gGg/gTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913534	39913534	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	171	507	1	ENST00000378444.4:c.4794G>A	p.Trp1598Ter	p.W1598*	ENST00000378444	NM_001123385.1	1598	tgG/tgA																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	130	284	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427438	49427438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	84	840	0	ENST00000301067.7:c.11050C>T	p.Gln3684Ter	p.Q3684*	ENST00000301067	NM_003482.3	3684	Caa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245344	153245345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	117	496	0	ENST00000281708.4:c.1846dup	p.Thr616AsnfsTer28	p.T616Nfs*28	ENST00000281708	NM_033632.3	616	aca/aAca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	51	494	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	25	380	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0036958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	170	608	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504417	186504417	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	62	565	0	ENST00000323963.5:c.754A>G	p.Ile252Val	p.I252V	ENST00000323963		252	Att/Gtt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060728	38060728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	113	892	0	ENST00000250448.2:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000250448	NM_004496.3	421	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	175	643	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	79	274	0				ENST00000310581	NM_198253.2																																																																																
PIK3C3	5289	MSKCC	GRCh37	18	39617740	39617740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	48	417	0	ENST00000262039.4:c.1924C>T	p.Arg642Cys	p.R642C	ENST00000262039	NM_002647.2	642	Cgt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	602	514	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	217	661	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208016	5208016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	11	699	1	ENST00000357368.4:c.5695C>T	p.Arg1899Trp	p.R1899W	ENST00000357368	NM_002850.3	1899	Cgg/Tgg																																																																														
ALK	238	MSKCC	GRCh37	2	30143188	30143188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	20	367	0	ENST00000389048.3:c.338G>T	p.Gly113Val	p.G113V	ENST00000389048	NM_004304.4	113	gGt/gTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045469	47045470	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	AT			P-0036969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	64	240	0	ENST00000329236.7:c.2202_2203delinsAT	p.Met734_Lys735delinsIleTer	p.M734_K735delinsI*	ENST00000329236	NM_001204466.1	734	atGAag/atATag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	74	298	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga																																																																														
NUP93	9688	MSKCC	GRCh37	16	56868124	56868124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	150	487	3	ENST00000308159.5:c.1622C>T	p.Ser541Phe	p.S541F	ENST00000308159	NM_014669.4	541	tCc/tTc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933192	39933192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	186	677	4	ENST00000378444.4:c.1407C>A	p.Ser469Arg	p.S469R	ENST00000378444	NM_001123385.1	469	agC/agA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418395	49418395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	63	445	0	ENST00000301067.7:c.16018C>T	p.Arg5340Ter	p.R5340*	ENST00000301067	NM_003482.3	5340	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	22	555	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	20	317	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624297	89624297	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	38	455	0	ENST00000371953.3:c.71A>G	p.Asp24Gly	p.D24G	ENST00000371953	NM_000314.4	24	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	109	609	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	217	588	1	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449727	8449727	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	109	479	0	ENST00000356435.5:c.3986C>T	p.Pro1329Leu	p.P1329L	ENST00000356435		1329	cCg/cTg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25468919	25468919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	93	638	0	ENST00000264709.3:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000264709	NM_175629.2	482	Gag/Aag																																																																														
EZH1	2145	MSKCC	GRCh37	17	40858170	40858170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	79	690	0	ENST00000428826.2:c.1694C>A	p.Thr565Asn	p.T565N	ENST00000428826		565	aCc/aAc																																																																														
AXL	558	MSKCC	GRCh37	19	41749589	41749589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	221	645	0	ENST00000301178.4:c.1514G>A	p.Ser505Asn	p.S505N	ENST00000301178	NM_021913.4	505	aGt/aAt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	240	509	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	27	458	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438516	52438516	+	stop_gained	Nonsense_Mutation	SNP	A	A	C	rs200156887		P-0036980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	330	527	0	ENST00000460680.1:c.1203T>G	p.Tyr401Ter	p.Y401*	ENST00000460680	NM_004656.3	401	taT/taG																																																																														
POLE	5426	MSKCC	GRCh37	12	133242000	133242000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	316	592	0	ENST00000320574.5:c.2356G>T	p.Gly786Cys	p.G786C	ENST00000320574	NM_006231.2	786	Ggc/Tgc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976245	18976245	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	296	646	0	ENST00000262803.5:c.3005A>G	p.Asn1002Ser	p.N1002S	ENST00000262803	NM_002911.3	1002	aAc/aGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218849	36218849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	114	638	1	ENST00000222270.7:c.4460G>A	p.Arg1487His	p.R1487H	ENST00000222270	NM_014727.1	1487	cGc/cAc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222163	2222163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	164	749	0	ENST00000398665.3:c.2995C>T	p.Pro999Ser	p.P999S	ENST00000398665	NM_032482.2	999	Cct/Tct																																																																														
AKT2	208	MSKCC	GRCh37	19	40739804	40739804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	203	773	0	ENST00000392038.2:c.1421C>T	p.Ser474Phe	p.S474F	ENST00000392038	NM_001626.4	474	tCc/tTc																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47600707	47600707	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0036989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	54	337	0	ENST00000263735.4:c.182A>C	p.Lys61Thr	p.K61T	ENST00000263735	NM_002354.2	61	aAg/aCg																																																																														
TET2	54790	MSKCC	GRCh37	4	106158094	106158094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	38	229	0	ENST00000380013.4:c.2995G>A	p.Glu999Lys	p.E999K	ENST00000380013	NM_001127208.2	999	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175141	112175141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	31	205	0	ENST00000257430.4:c.3850G>A	p.Glu1284Lys	p.E1284K	ENST00000257430	NM_000038.5	1284	Gaa/Aaa																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271357	26271357	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	45	417	0	ENST00000305910.3:c.256C>T	p.Gln86Ter	p.Q86*	ENST00000305910	NM_003534.2	86	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	166	437	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0036999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	101	274	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7577531	7577531	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	378	604	0	ENST00000269305.4:c.750delC	p.Ile251SerfsTer94	p.I251Sfs*94	ENST00000269305	NM_001126112.2	250	ccC/cc																																																																														
ATM	472	MSKCC	GRCh37	11	108151895	108151895	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0036999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	121	306	0	ENST00000278616.4:c.3576G>C	p.Lys1192Asn	p.K1192N	ENST00000278616	NM_000051.3	1192	aaG/aaC																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146710	185146710	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	201	582	0	ENST00000265026.3:c.341A>G	p.Glu114Gly	p.E114G	ENST00000265026	NM_004721.4	114	gAa/gGa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526390	31526390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1273	86	868	0	ENST00000344624.3:c.650G>C	p.Ser217Thr	p.S217T	ENST00000344624		217	aGt/aCt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946779	71946779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	121	568	1	ENST00000298229.2:c.2720G>A	p.Arg907Gln	p.R907Q	ENST00000298229	NM_001567.3	907	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	79	400	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	262	556	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
BARD1	580	MSKCC	GRCh37	2	215610575	215610575	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	155	409	0	ENST00000260947.4:c.1681A>G	p.Asn561Asp	p.N561D	ENST00000260947	NM_000465.2	561	Aac/Gac																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182662920	182662920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	203	513	1	ENST00000292782.4:c.742C>T	p.Arg248Cys	p.R248C	ENST00000292782	NM_020640.2	248	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532678	187532678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	202	470	0	ENST00000441802.2:c.9715G>A	p.Val3239Met	p.V3239M	ENST00000441802	NM_005245.3	3239	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112137082	112137082	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0037000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	64	246	0	ENST00000257430.4:c.834+2T>G		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																															
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0037000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	66	219	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27777993	27777993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	98	366	0	ENST00000369163.2:c.142G>T	p.Ala48Ser	p.A48S	ENST00000369163	NM_003536.2	48	Gct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	70	451	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	81	431	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	13	443	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	52	457	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16024505	16024505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	100	492	3	ENST00000268712.3:c.1713delG	p.Arg572GlufsTer18	p.R572Efs*18	ENST00000268712	NM_006311.3	571	ggG/gg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738669	145738669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34293591		P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	159	699	2	ENST00000428558.2:c.2395G>A	p.Val799Met	p.V799M	ENST00000428558	NM_004260.3	799	Gtg/Atg																																																																														
NF1	4763	MSKCC	GRCh37	17	29654820	29654820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	61	354	0	ENST00000358273.4:c.5572G>A	p.Ala1858Thr	p.A1858T	ENST00000358273	NM_001042492.2	1858	Gca/Aca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	93	511	1	ENST00000373198.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000373198	NM_133170.3	546	cGg/cAg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	77	416	0	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	52	380	1	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287889	33287891	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	66	599	1	ENST00000374542.5:c.1362_1364del	p.Glu457del	p.E457del	ENST00000374542	NM_001141970.1	454	gaAGAg/gag																																																																														
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	107	520	1	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	90	636	5	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591135	67591136	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	35	252	0	ENST00000274335.5:c.1732_1733del	p.Asp578ProfsTer23	p.D578Pfs*23	ENST00000274335		576	acGAga/acga																																																																														
SMO	6608	MSKCC	GRCh37	7	128851941	128851943	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	91	632	0	ENST00000249373.3:c.2021_2023del	p.Lys674del	p.K674del	ENST00000249373	NM_005631.4	671	cgGAAg/cgg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40460234	40460234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	99	503	0	ENST00000345506.4:c.1945C>T	p.Arg649Trp	p.R649W	ENST00000345506	NM_003152.3	649	Cgg/Tgg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88727501	88727501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147992979		P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	126	546	2	ENST00000360948.2:c.278C>T	p.Thr93Met	p.T93M	ENST00000360948	NM_001012338.2	93	aCg/aTg																																																																														
RARA	5914	MSKCC	GRCh37	17	38512370	38512370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	72	648	1	ENST00000254066.5:c.1286del	p.Gly429ValfsTer214	p.G429Vfs*214	ENST00000254066	NM_000964.3	427	ccG/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	111	786	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	118	611	4	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939674	76939674	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	95	357	1	ENST00000373344.5:c.1074delA	p.Lys358AsnfsTer2	p.K358Nfs*2	ENST00000373344	NM_000489.3	358	aaA/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	149	631	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117695815	117695815	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	106	475	0	ENST00000369458.3:c.622A>G	p.Met208Val	p.M208V	ENST00000369458	NM_024626.3	208	Atg/Gtg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21555611	21555611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	119	531	0	ENST00000382592.4:c.2659C>T	p.Arg887Cys	p.R887C	ENST00000382592	NM_014572.2	887	Cgc/Tgc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9777114	9777114	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	141	666	1	ENST00000377346.4:c.883delC	p.Gln295ArgfsTer39	p.Q295Rfs*39	ENST00000377346	NM_005026.3	293	gCc/gc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800427	32800427	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111303994		P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	162	846	0	ENST00000374899.4:c.1120G>A	p.Ala374Thr	p.A374T	ENST00000374899	NM_018833.2	374	Gcc/Acc																																																																														
BCL2	596	MSKCC	GRCh37	18	60795958	60795958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	86	418	0	ENST00000333681.4:c.620G>A	p.Arg207Gln	p.R207Q	ENST00000333681		207	cGg/cAg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129646	2129646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	145	687	2	ENST00000219476.3:c.3373C>T	p.Arg1125Trp	p.R1125W	ENST00000219476	NM_000548.3	1125	Cgg/Tgg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593351	67593352	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	53	287	0	ENST00000274335.5:c.2101_2102del	p.Thr701LeufsTer39	p.T701Lfs*39	ENST00000274335		699	caACac/caac																																																																														
CIC	23152	MSKCC	GRCh37	19	42797404	42797404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	154	676	1	ENST00000575354.2:c.3766C>T	p.Arg1256Trp	p.R1256W	ENST00000575354	NM_015125.3	1256	Cgg/Tgg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800429	32800429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	163	847	0	ENST00000374899.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000374899	NM_018833.2	373	cGc/cAc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162749975	162749975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147604927		P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	95	518	1	ENST00000367921.3:c.2507C>T	p.Thr836Met	p.T836M	ENST00000367921	NM_006182.2	836	aCg/aTg																																																																														
PGR	5241	MSKCC	GRCh37	11	100998292	100998292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	36	164	0	ENST00000325455.5:c.1510G>A	p.Ala504Thr	p.A504T	ENST00000325455	NM_001202474.3	504	Gcc/Acc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120497837	120497837	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	96	460	0	ENST00000256646.2:c.2045A>G	p.Asp682Gly	p.D682G	ENST00000256646	NM_024408.3	682	gAc/gGc																																																																														
RET	5979	MSKCC	GRCh37	10	43615005	43615005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	86	538	1	ENST00000355710.3:c.2419G>A	p.Ala807Thr	p.A807T	ENST00000355710	NM_020975.4	807	Gcc/Acc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946931	71946931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	163	773	1	ENST00000298229.2:c.2780C>T	p.Pro927Leu	p.P927L	ENST00000298229	NM_001567.3	927	cCg/cTg																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94194167	94194167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	26	519	1	ENST00000323929.3:c.1261C>T	p.Pro421Ser	p.P421S	ENST00000323929	NM_005591.3	421	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433113	49433113	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	124	657	1	ENST00000301067.7:c.8258del	p.Pro2753GlnfsTer4	p.P2753Qfs*4	ENST00000301067	NM_003482.3	2753	cCa/ca																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111886044	111886044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	92	475	0	ENST00000341259.2:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000341259	NM_005475.2	556	Gaa/Aaa																																																																														
SETD8	387893	MSKCC	GRCh37	12	123879626	123879626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	59	296	0	ENST00000330479.4:c.322G>A	p.Ala108Thr	p.A108T	ENST00000330479	NM_020382.3	108	Gcc/Acc																																																																														
RB1	5925	MSKCC	GRCh37	13	48881529	48881532	+	frameshift_variant	Frame_Shift_Del	DEL	TGGA	TGGA	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	34	303	0	ENST00000267163.4:c.255_258del	p.Asp85GlufsTer25	p.D85Efs*25	ENST00000267163	NM_000321.2	84	gTGGAt/gt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590680	95590680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	65	425	0	ENST00000343455.3:c.1229T>C	p.Val410Ala	p.V410A	ENST00000343455	NM_177438.2	410	gTg/gCg																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2094671	2094671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	186	750	0	ENST00000219066.1:c.509C>T	p.Ala170Val	p.A170V	ENST00000219066	NM_002528.5	170	gCc/gTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3634840	3634841	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	135	687	0	ENST00000294008.3:c.4668dupC	p.Lys1557GlnfsTer24	p.K1557Qfs*24	ENST00000294008	NM_032444.2	1556	-/C																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647562	3647562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	152	794	0	ENST00000294008.3:c.1501C>T	p.Pro501Ser	p.P501S	ENST00000294008	NM_032444.2	501	Cca/Tca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883131	37883131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	178	757	0	ENST00000269571.5:c.3034G>T	p.Asp1012Tyr	p.D1012Y	ENST00000269571		1012	Gat/Tat																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252720	10252720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	117	532	2	ENST00000340748.4:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000340748		1082	cGc/cAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794847	42794847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	112	535	0	ENST00000575354.2:c.1927G>A	p.Gly643Ser	p.G643S	ENST00000575354	NM_015125.3	643	Ggc/Agc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030716	48030718	+	inframe_deletion	In_Frame_Del	DEL	TAA	TAA	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	62	367	0	ENST00000234420.5:c.3331_3333del	p.Asn1111del	p.N1111del	ENST00000234420	NM_000179.2	1110	ccTAAt/cct																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095645	178095646	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	78	525	0	ENST00000397062.3:c.1685_1686del	p.Leu562ArgfsTer8	p.L562Rfs*8	ENST00000397062	NM_006164.4	562	cTC/c																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265547	198265547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	82	639	0	ENST00000335508.6:c.2610G>T	p.Glu870Asp	p.E870D	ENST00000335508	NM_012433.2	870	gaG/gaT																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024038	31024038	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	130	549	0	ENST00000375687.4:c.3523G>T	p.Glu1175Ter	p.E1175*	ENST00000375687	NM_015338.5	1175	Gag/Tag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37089076	37089076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	95	438	0	ENST00000231790.2:c.1798G>T	p.Glu600Ter	p.E600*	ENST00000231790	NM_000249.3	600	Gaa/Taa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968294	134968294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	111	512	2	ENST00000398015.3:c.2807G>A	p.Gly936Asp	p.G936D	ENST00000398015	NM_004441.4	936	gGc/gAc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007411	143007411	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	40	207	0	ENST00000262992.4:c.2375-2A>G		p.X792_splice	ENST00000262992	NM_001101669.1	792																																																																															
INPP4B	8821	MSKCC	GRCh37	4	143226671	143226671	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	58	304	0	ENST00000262992.4:c.443C>G	p.Ala148Gly	p.A148G	ENST00000262992	NM_001101669.1	148	gCc/gGc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754595	57754595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	68	388	0	ENST00000274289.3:c.452A>G	p.Asp151Gly	p.D151G	ENST00000274289	NM_006622.3	151	gAc/gGc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323205	31323205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	122	625	0	ENST00000412585.2:c.784G>A	p.Asp262Asn	p.D262N	ENST00000412585	NM_005514.6	262	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172159	32172159	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	99	525	0	ENST00000375023.3:c.2873del	p.Pro958GlnfsTer90	p.P958Qfs*90	ENST00000375023	NM_004557.3	958	cCa/ca																																																																														
SESN1	27244	MSKCC	GRCh37	6	109321829	109321830	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	79	565	0	ENST00000436639.2:c.593dup	p.Asn198LysfsTer2	p.N198Kfs*2	ENST00000436639	NM_014454.2	198	aat/aaAt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372338	55372338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	180	751	0	ENST00000297316.4:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000297316	NM_022454.3	343	cGg/cAg																																																																														
NBN	4683	MSKCC	GRCh37	8	90947814	90947814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	31	392	0	ENST00000265433.3:c.2261G>T	p.Arg754Ile	p.R754I	ENST00000265433	NM_002485.4	754	aGa/aTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399382	139399383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	179	791	0	ENST00000277541.6:c.4760dup	p.Asn1587LysfsTer23	p.N1587Kfs*23	ENST00000277541	NM_017617.3	1587	aac/aaAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413124	139413125	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0037001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	150	735	0	ENST00000277541.6:c.1017_1018del	p.Ala340GlnfsTer12	p.A340Qfs*12	ENST00000277541	NM_017617.3	339	tgTGcc/tgcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0037009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	16	417	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112173387	112173387	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0037009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	38	286	0	ENST00000257430.4:c.2096G>A	p.Trp699Ter	p.W699*	ENST00000257430	NM_000038.5	699	tGg/tAg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610119	81610119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	55	417	0	ENST00000298171.2:c.1717G>A	p.Asp573Asn	p.D573N	ENST00000298171	NM_000369.2	573	Gac/Aac																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	186	731	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	158	695	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	180	743	0	ENST00000397062.3:c.229G>C	p.Asp77His	p.D77H	ENST00000397062	NM_006164.4	77	Gat/Cat																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076785	72076785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	124	475	0	ENST00000357731.5:c.712G>A	p.Gly238Arg	p.G238R	ENST00000357731	NM_173808.2	238	Gga/Aga																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266749	198266749	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0037169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	91	555	0	ENST00000335508.6:c.2183T>G	p.Leu728Ter	p.L728*	ENST00000335508	NM_012433.2	728	tTa/tGa																																																																														
TET2	54790	MSKCC	GRCh37	4	106196483	106196483	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0037169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	85	468	0	ENST00000380013.4:c.4816G>C	p.Gly1606Arg	p.G1606R	ENST00000380013	NM_001127208.2	1606	Ggt/Cgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202968	16202968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	189	339	1	ENST00000375759.3:c.676C>T	p.Arg226Trp	p.R226W	ENST00000375759	NM_015001.2	226	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255718	16255718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	26	229	0	ENST00000375759.3:c.2983G>A	p.Ala995Thr	p.A995T	ENST00000375759	NM_015001.2	995	Gca/Aca																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260395	16260395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	163	357	0	ENST00000375759.3:c.7660G>A	p.Val2554Ile	p.V2554I	ENST00000375759	NM_015001.2	2554	Gtc/Atc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36938264	36938264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150616658		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	263	523	0	ENST00000361632.4:c.697C>T	p.Arg233Trp	p.R233W	ENST00000361632		233	Cgg/Tgg																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	109	262	2	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849069	156849069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	302	566	0	ENST00000524377.1:c.1961G>A	p.Arg654His	p.R654H	ENST00000524377	NM_002529.3	654	cGc/cAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	333	273	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633626	69633626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	52	51	0	ENST00000334134.2:c.76C>T	p.Arg26Trp	p.R26W	ENST00000334134	NM_005247.2	26	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	125	259	0	ENST00000278616.4:c.6908dupA	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307394	118307394	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	18	23	0	ENST00000534358.1:c.173del	p.Pro58ArgfsTer92	p.P58Rfs*92	ENST00000534358	NM_005933.3	56	tCc/tc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871044	12871044	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	126	183	0	ENST00000228872.4:c.275delC	p.Pro92ArgfsTer27	p.P92Rfs*27	ENST00000228872	NM_004064.3	91	Ccc/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	120	316	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432375	49432375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	283	522	0	ENST00000301067.7:c.8764C>T	p.Arg2922Trp	p.R2922W	ENST00000301067	NM_003482.3	2922	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	285	512	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482363	56482363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	218	420	0	ENST00000267101.3:c.911C>T	p.Ala304Val	p.A304V	ENST00000267101	NM_001982.3	304	gCc/gTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133233793	133233794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	246	526	0	ENST00000320574.5:c.3510dup	p.Leu1171ThrfsTer6	p.L1171Tfs*6	ENST00000320574	NM_006231.2	1170	-/A																																																																														
POLE	5426	MSKCC	GRCh37	12	133253208	133253208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	176	373	0	ENST00000320574.5:c.833C>T	p.Thr278Met	p.T278M	ENST00000320574	NM_006231.2	278	aCg/aTg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609958	81609958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	100	261	0	ENST00000298171.2:c.1556G>A	p.Arg519His	p.R519H	ENST00000298171	NM_000369.2	519	cGc/cAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95570459	95570459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	17	197	0	ENST00000343455.3:c.3274C>A	p.Pro1092Thr	p.P1092T	ENST00000343455	NM_177438.2	1092	Cct/Act																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	101	299	11	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2221325	2221325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	270	496	0	ENST00000326181.6:c.409G>A	p.Val137Ile	p.V137I	ENST00000326181	NM_032271.2	137	Gtc/Atc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779727	3779727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	207	439	0	ENST00000262367.5:c.5321G>A	p.Arg1774His	p.R1774H	ENST00000262367	NM_004380.2	1774	cGc/cAc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134428	30134428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	288	455	0	ENST00000263025.4:c.103C>T	p.Pro35Ser	p.P35S	ENST00000263025	NM_002746.2	35	Ccg/Tcg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782295	56782295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	170	309	0	ENST00000308159.5:c.136C>T	p.Arg46Cys	p.R46C	ENST00000308159	NM_014669.4	46	Cgt/Tgt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	133	269	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832557	72832557	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141100730		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	180	301	0	ENST00000268489.5:c.4024G>A	p.Gly1342Arg	p.G1342R	ENST00000268489	NM_006885.3	1342	Gga/Aga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845477	72845477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	175	346	0	ENST00000268489.5:c.3863C>T	p.Thr1288Met	p.T1288M	ENST00000268489	NM_006885.3	1288	aCg/aTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81979857	81979857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	178	305	0	ENST00000359376.3:c.3559C>T	p.Arg1187Trp	p.R1187W	ENST00000359376	NM_002661.3	1187	Cgg/Tgg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350411	89350411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	276	573	0	ENST00000301030.4:c.2539G>A	p.Asp847Asn	p.D847N	ENST00000301030	NM_001256183.1	847	Gat/Aat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351703	89351703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	349	522	0	ENST00000301030.4:c.1247C>T	p.Ala416Val	p.A416V	ENST00000301030	NM_001256183.1	416	gCg/gTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805104	89805104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	213	338	0	ENST00000389301.3:c.4273C>T	p.Arg1425Cys	p.R1425C	ENST00000389301	NM_000135.2	1425	Cgt/Tgt																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110597	8110597	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	257	404	0	ENST00000585124.1:c.295A>G	p.Ser99Gly	p.S99G	ENST00000585124	NM_004217.3	99	Agc/Ggc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41251830	41251830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	214	478	0	ENST00000357654.3:c.509G>A	p.Arg170Gln	p.R170Q	ENST00000357654	NM_007294.3	170	cGg/cAg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47677762	47677762	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1380705599		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	119	266	0	ENST00000347630.2:c.1103G>A	p.Arg368His	p.R368H	ENST00000347630	NM_001007230.1	368	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	247	453	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	290	464	1	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58725428	58725429	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	23	362	0	ENST00000305921.3:c.1008dup	p.Tyr337IlefsTer5	p.Y337Ifs*5	ENST00000305921	NM_003620.3	334	-/A																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	273	579	1	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	149	339	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	175	334	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
INSR	3643	MSKCC	GRCh37	19	7117245	7117245	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	255	520	0	ENST00000302850.5:c.3971T>C	p.Met1324Thr	p.M1324T	ENST00000302850	NM_000208.2	1324	aTg/aCg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610591	10610591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	266	477	0	ENST00000171111.5:c.119C>T	p.Ala40Val	p.A40V	ENST00000171111	NM_203500.1	40	gCg/gTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955118	17955118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	332	548	0	ENST00000458235.1:c.109C>G	p.Pro37Ala	p.P37A	ENST00000458235	NM_000215.3	37	Ccc/Gcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213945	36213945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	270	579	0	ENST00000222270.7:c.2771G>A	p.Arg924Gln	p.R924Q	ENST00000222270	NM_014727.1	924	cGg/cAg																																																																														
AKT2	208	MSKCC	GRCh37	19	40740960	40740960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	264	572	0	ENST00000392038.2:c.1358del	p.Pro453LeufsTer122	p.P453Lfs*122	ENST00000392038	NM_001626.4	453	cCt/ct																																																																														
AXL	558	MSKCC	GRCh37	19	41743883	41743883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	314	511	0	ENST00000301178.4:c.818C>T	p.Ala273Val	p.A273V	ENST00000301178	NM_021913.4	273	gCg/gTg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383692	42383692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202097187		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	248	393	0	ENST00000221972.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000221972	NM_021601.3	156	gCg/gTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794686	42794686	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202152564		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	209	543	0	ENST00000575354.2:c.1766G>A	p.Arg589Gln	p.R589Q	ENST00000575354	NM_015125.3	589	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918992	50918992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	214	417	1	ENST00000440232.2:c.2729G>A	p.Arg910Gln	p.R910Q	ENST00000440232	NM_002691.3	910	cGg/cAg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965131	25965131	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	211	407	0	ENST00000435504.4:c.4075T>C	p.Ser1359Pro	p.S1359P	ENST00000435504		1359	Tca/Cca																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	191	460	0	ENST00000435504.4:c.2333dupC	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	110	343	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033352	48033352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	117	319	0	ENST00000234420.5:c.3656C>T	p.Thr1219Ile	p.T1219I	ENST00000234420	NM_000179.2	1219	aCt/aTt																																																																														
CASP8	841	MSKCC	GRCh37	2	202137461	202137461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	125	280	0	ENST00000358485.4:c.689T>C	p.Leu230Pro	p.L230P	ENST00000358485	NM_001080125.1	230	cTg/cCg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021181	31021181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	188	356	0	ENST00000375687.4:c.1180C>T	p.Arg394Cys	p.R394C	ENST00000375687	NM_015338.5	394	Cgt/Tgt																																																																														
CRKL	1399	MSKCC	GRCh37	22	21304065	21304065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	215	333	0	ENST00000354336.3:c.844C>T	p.Arg282Cys	p.R282C	ENST00000354336	NM_005207.3	282	Cgc/Tgc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163376	47163377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	117	275	0	ENST00000409792.3:c.2749dup	p.Ser917LysfsTer18	p.S917Kfs*18	ENST00000409792	NM_014159.6	917	agt/aAgt																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204992	128204992	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	114	532	0	ENST00000341105.2:c.449del	p.Gly150GlufsTer68	p.G150Efs*68	ENST00000341105	NM_032638.4	150	gGa/ga																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403608	138403608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	42	402	0	ENST00000289153.2:c.2174T>C	p.Leu725Ser	p.L725S	ENST00000289153	NM_006219.2	725	tTa/tCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187517762	187517762	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	71	160	0	ENST00000441802.2:c.12932del	p.Pro4311HisfsTer38	p.P4311Hfs*38	ENST00000441802	NM_005245.3	4311	cCa/ca																																																																														
TERT	7015	MSKCC	GRCh37	5	1254582	1254582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	66	452	0	ENST00000310581.5:c.3196C>T	p.Pro1066Ser	p.P1066S	ENST00000310581	NM_198253.2	1066	Ccc/Tcc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048238	180048238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	251	558	1	ENST00000261937.6:c.2035C>T	p.Arg679Trp	p.R679W	ENST00000261937	NM_182925.4	679	Cgg/Tgg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053143	180053143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	250	541	0	ENST00000261937.6:c.1226G>A	p.Arg409Lys	p.R409K	ENST00000261937	NM_182925.4	409	aGg/aAg																																																																														
IRF4	3662	MSKCC	GRCh37	6	405042	405042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	146	300	0	ENST00000380956.4:c.1124G>A	p.Gly375Asp	p.G375D	ENST00000380956	NM_001195286.1	375	gGc/gAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32185819	32185819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145916093		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	257	520	2	ENST00000375023.3:c.1577C>T	p.Ala526Val	p.A526V	ENST00000375023	NM_004557.3	526	gCg/gTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964394	93964394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	101	301	0	ENST00000369303.4:c.2503A>G	p.Arg835Gly	p.R835G	ENST00000369303	NM_004440.3	835	Aga/Gga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94068121	94068121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149408123		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	55	154	1	ENST00000369303.4:c.841C>T	p.Arg281Cys	p.R281C	ENST00000369303	NM_004440.3	281	Cgt/Tgt																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137524803	137524803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	91	286	0	ENST00000367739.4:c.566C>T	p.Thr189Met	p.T189M	ENST00000367739	NM_000416.2	189	aCg/aTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150533	157150533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	168	300	0	ENST00000346085.5:c.1715G>A	p.Gly572Glu	p.G572E	ENST00000346085	NM_020732.3	572	gGa/gAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528715	157528715	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	35	353	0	ENST00000346085.5:c.6440G>T	p.Arg2147Met	p.R2147M	ENST00000346085	NM_020732.3	2147	aGg/aTg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508860	106508860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	176	318	0	ENST00000359195.3:c.854C>T	p.Thr285Met	p.T285M	ENST00000359195	NM_002649.2	285	aCg/aTg																																																																														
MET	4233	MSKCC	GRCh37	7	116414203	116414203	+	intron_variant	Intron	SNP	T	T	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	159	433	0	ENST00000397752.3:c.3029-732T>A		p.*1010*	ENST00000397752	NM_000245.2	1010																																																																															
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	13	421	0	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128268598	128268598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	277	528	1	ENST00000265960.3:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000265960	NM_001006617.1	353	Cgc/Tgc																																																																														
ABL1	25	MSKCC	GRCh37	9	133759781	133759781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	169	373	0	ENST00000318560.5:c.2104G>A	p.Glu702Lys	p.E702K	ENST00000318560	NM_005157.4	702	Gag/Aag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931673	39931673	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	274	274	0	ENST00000378444.4:c.2926C>T	p.Arg976Ter	p.R976*	ENST00000378444	NM_001123385.1	976	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436297	110436297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	160	225	0	ENST00000375856.3:c.2104G>A	p.Val702Met	p.V702M	ENST00000375856	NM_003749.2	702	Gtg/Atg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151902312	151902312	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	13	184	0	ENST00000262189.6:c.3842-2A>T		p.X1281_splice	ENST00000262189	NM_170606.2	1281																																																																															
SLX4	84464	MSKCC	GRCh37	16	3656483	3656483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201117707		P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	244	580	1	ENST00000294008.3:c.752C>T	p.Ala251Val	p.A251V	ENST00000294008	NM_032444.2	251	gCg/gTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162660	47162660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	141	312	0	ENST00000409792.3:c.3466C>T	p.Arg1156Cys	p.R1156C	ENST00000409792	NM_014159.6	1156	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	111	425	0				ENST00000310581	NM_198253.2																																																																																
ERCC2	2068	MSKCC	GRCh37	19	45856060	45856060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	147	483	0	ENST00000391945.4:c.1846C>T	p.Arg616Trp	p.R616W	ENST00000391945	NM_000400.3	616	Cgg/Tgg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39931992	39931993	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TT			P-0036937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	124	326	0	ENST00000378444.4:c.2606_2607insAA	p.Tyr869Ter	p.Y869*	ENST00000378444	NM_001123385.1	869	tat/taAAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47144906	47144906	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	14	352	0	ENST00000409792.3:c.4847A>T	p.Asp1616Val	p.D1616V	ENST00000409792	NM_014159.6	1616	gAt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0036939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	95	357	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	43	176	0	ENST00000257430.4:c.4634C>A	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099968	27099968	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	105	387	0	ENST00000324856.7:c.3847G>C	p.Gly1283Arg	p.G1283R	ENST00000324856	NM_006015.4	1283	Ggt/Cgt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682571	37682593	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TAAACAGACCGGTCATGAATCTC	TAAACAGACCGGTCATGAATCTC	-			P-0036939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	54	144	0	ENST00000447079.4:c.3760+2_3760+24del		p.X1254_splice	ENST00000447079	NM_015083.1	1254																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216321	2216321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	139	549	0	ENST00000398665.3:c.1965G>T	p.Glu655Asp	p.E655D	ENST00000398665	NM_032482.2	655	gaG/gaT																																																																														
APC	324	MSKCC	GRCh37	5	112170810	112170810	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	110	463	0	ENST00000257430.4:c.1906G>C	p.Gly636Arg	p.G636R	ENST00000257430	NM_000038.5	636	Ggt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	48	263	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	54	259	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	77	253	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717704	89717704	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	120	364	0	ENST00000371953.3:c.731delC	p.Pro244LeufsTer12	p.P244Lfs*12	ENST00000371953	NM_000314.4	243	ttC/tt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71101750	71101751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	89	241	0	ENST00000318789.4:c.447dup	p.Gln150ThrfsTer20	p.Q150Tfs*20	ENST00000318789	NM_032682.5	149	-/A																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720858	89720858	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	123	267	0	ENST00000371953.3:c.1012del	p.Ser338LeufsTer6	p.S338Lfs*6	ENST00000371953	NM_000314.4	337	Ttt/tt																																																																														
ATM	472	MSKCC	GRCh37	11	108235819	108235819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	84	341	0	ENST00000278616.4:c.8861A>G	p.Tyr2954Cys	p.Y2954C	ENST00000278616	NM_000051.3	2954	tAt/tGt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972794	25972794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	73	427	0	ENST00000435504.4:c.1631C>T	p.Ala544Val	p.A544V	ENST00000435504		544	gCg/gTg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178541	56178541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	67	221	0	ENST00000399503.3:c.3514A>C	p.Asn1172His	p.N1172H	ENST00000399503	NM_005921.1	1172	Aat/Cat																																																																														
KIT	3815	MSKCC	GRCh37	4	55593662	55593663	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCTTATGATCACAAATGGGAGTTTCCCAGAAACAGG			P-0037004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	158	391	0	ENST00000288135.5:c.1730_1765dup	p.Pro577_Arg588dup	p.P577_R588dup	ENST00000288135	NM_000222.2	577	-/CCTTATGATCACAAATGGGAGTTTCCCAGAAACAGG																																																																														
RB1	5925	MSKCC	GRCh37	13	48919228	48919228	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0037005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	87	148	0	ENST00000267163.4:c.393C>G	p.Phe131Leu	p.F131L	ENST00000267163	NM_000321.2	131	ttC/ttG																																																																														
CCNE1	898	MSKCC	GRCh37	19	30312627	30312627	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0037008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	51	432	0	ENST00000262643.3:c.610-2A>T		p.X204_splice	ENST00000262643	NM_001238.2	204																																																																															
VHL	7428	MSKCC	GRCh37	3	10183752	10183754	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0037008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	87	669	0	ENST00000256474.2:c.223_225del	p.Ile75del	p.I75del	ENST00000256474	NM_000551.3	74	gTCAtc/gtc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103652	47103652	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0037008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	37	339	0	ENST00000409792.3:c.6293+1G>T		p.X2098_splice	ENST00000409792	NM_014159.6	2098																																																																															
BAP1	8314	MSKCC	GRCh37	3	52439856	52439857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0037008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	63	541	0	ENST00000460680.1:c.855dup	p.Lys286GlnfsTer21	p.K286Qfs*21	ENST00000460680	NM_004656.3	285	-/C																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469852	157469852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	78	578	0	ENST00000346085.5:c.2646G>A	p.Met882Ile	p.M882I	ENST00000346085	NM_020732.3	882	atG/atA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0037010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	12	182	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0037010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	14	166	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
BTK	695	MSKCC	GRCh37	X	100608325	100608325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0037010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	22	192	0	ENST00000308731.7:c.1765G>A	p.Glu589Lys	p.E589K	ENST00000308731	NM_000061.2	589	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	223	647	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81892752	81892752	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	58	365	0	ENST00000359376.3:c.463C>G	p.Gln155Glu	p.Q155E	ENST00000359376	NM_002661.3	155	Caa/Gaa																																																																														
SDHC	6391	MSKCC	GRCh37	1	161326550	161326550	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	12	134	0	ENST00000367975.2:c.325G>C	p.Gly109Arg	p.G109R	ENST00000367975	NM_003001.3	109	Ggg/Cgg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893262	32893262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	82	275	0	ENST00000380152.3:c.116C>T	p.Ala39Val	p.A39V	ENST00000380152		39	gCt/gTt																																																																														
ATR	545	MSKCC	GRCh37	3	142276536	142277487	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAATCTTGGCTCACTGAAACCTCTGCCTCCTGGGTTCAAGAGATTCTTGTATCTCAGCCTCCCTAGTAGCTGGGACTACAGGCGTGAGCCACCATGCCTGGCTAATTTTTGTATTTTTAGAAGAGATGAGGTTTTGCCATGTTGGCCAGGCTGGTCTCAAGCTCCTGACCTCAAGAGATCCGCATGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCTAATGTTTCTATTTCTTAAACTGAGAAGTTGGTATAAGAATTTTTGGTATATTGTTCTTCTTTTTAAAATATTTCTCAAATACTTCCTAATTTTATTAAATGAAGATAATGATATGTAAGGACACATTGCAAATGTTTTACAAAAAGAAAGGAAATGGGATATGTGGGGCAGGCTTTTATGTGTTACTTTTTATGTATCTAACCCCCTTCTGAACTATTAAAAATGTACCTGCTCTTTTAATTATTGAAAAAAATATAAATAAGTCTTAGAAGTCCTATATAGAGATGAGTTAAAACAAACCACACAAGGCCAGGCATGGTGGCTCACGCCTGTAATCCTAGCACTTTAGAAGGCTGGGGCAGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCTAACATGGTGAAACCCCGCCTCTACTAAAAATATAAGAATTAGCTGGGTATGGTGGTGCGCACCTGTAATCCTAGCTACTCAGGAGGCTGAGGCAGGAAAATTGCTTGAACCTGAAGACGGAGGTTGCAGCAAGCCGAGATTGCGCCACTGCACTCCAGCATGGGCGACAGAGTAAGACTCCGTCTCAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAGATAGATAGATAGATAGATAGATAAATAAAACAAACCACACACACATTCTTGTGAGCACTTACAATAGCTATCTGAAATCCTACA	GCAATCTTGGCTCACTGAAACCTCTGCCTCCTGGGTTCAAGAGATTCTTGTATCTCAGCCTCCCTAGTAGCTGGGACTACAGGCGTGAGCCACCATGCCTGGCTAATTTTTGTATTTTTAGAAGAGATGAGGTTTTGCCATGTTGGCCAGGCTGGTCTCAAGCTCCTGACCTCAAGAGATCCGCATGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCTAATGTTTCTATTTCTTAAACTGAGAAGTTGGTATAAGAATTTTTGGTATATTGTTCTTCTTTTTAAAATATTTCTCAAATACTTCCTAATTTTATTAAATGAAGATAATGATATGTAAGGACACATTGCAAATGTTTTACAAAAAGAAAGGAAATGGGATATGTGGGGCAGGCTTTTATGTGTTACTTTTTATGTATCTAACCCCCTTCTGAACTATTAAAAATGTACCTGCTCTTTTAATTATTGAAAAAAATATAAATAAGTCTTAGAAGTCCTATATAGAGATGAGTTAAAACAAACCACACAAGGCCAGGCATGGTGGCTCACGCCTGTAATCCTAGCACTTTAGAAGGCTGGGGCAGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCTAACATGGTGAAACCCCGCCTCTACTAAAAATATAAGAATTAGCTGGGTATGGTGGTGCGCACCTGTAATCCTAGCTACTCAGGAGGCTGAGGCAGGAAAATTGCTTGAACCTGAAGACGGAGGTTGCAGCAAGCCGAGATTGCGCCACTGCACTCCAGCATGGGCGACAGAGTAAGACTCCGTCTCAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAGATAGATAGATAGATAGATAGATAAATAAAACAAACCACACACACATTCTTGTGAGCACTTACAATAGCTATCTGAAATCCTACA	-			P-0036766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	39	0	0	ENST00000350721.4:c.1864_1885+930del		p.X622_splice	ENST00000350721	NM_001184.3	622																																																																															
KDR	3791	MSKCC	GRCh37	4	55970981	55970981	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	96	591	0	ENST00000263923.4:c.1816T>G	p.Leu606Val	p.L606V	ENST00000263923	NM_002253.2	606	Ttg/Gtg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528014	157528014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	86	458	0	ENST00000346085.5:c.5739C>A	p.His1913Gln	p.H1913Q	ENST00000346085	NM_020732.3	1913	caC/caA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020685-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			766	243	625	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242480	55242503	+	inframe_deletion	In_Frame_Del	DEL	AACATCTCCGAAAGCCAACAAGGA	AACATCTCCGAAAGCCAACAAGGA	-			P-0020685-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	366	349	0	ENST00000275493.2:c.2252_2275del	p.Thr751_Glu758del	p.T751_E758del	ENST00000275493	NM_005228.3	750	gcAACATCTCCGAAAGCCAACAAGGAa/gca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687286	117687286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020685-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	29	382	0	ENST00000368508.3:c.2765G>C	p.Arg922Thr	p.R922T	ENST00000368508	NM_002944.2	922	aGa/aCa																																																																														
CCND1	595	MSKCC	GRCh37	11	69457985	69457985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	58	251	0	ENST00000227507.2:c.385G>A	p.Asp129Asn	p.D129N	ENST00000227507	NM_053056.2	129	Gac/Aac																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517475	176517475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	75	550	1	ENST00000292408.4:c.176G>A	p.Arg59Gln	p.R59Q	ENST00000292408	NM_213647.1	59	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0032813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	231	490	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
RIT1	6016	MSKCC	GRCh37	1	155874536	155874536	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	97	503	0	ENST00000368323.3:c.223G>C	p.Asp75His	p.D75H	ENST00000368323	NM_006912.5	75	Gat/Cat																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71949057	71949085	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GCTCCCCCTGACATGCCCTGTTTCCTTAG	GCTCCCCCTGACATGCCCTGTTTCCTTAG	-			P-0032813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	15	416	0	ENST00000298229.2:c.3553-24_3557del		p.X1185_splice	ENST00000298229	NM_001567.3	1185																																																																															
GPS2	2874	MSKCC	GRCh37	17	7216554	7216581	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTAGCATGTTCCATCTGCTTTTGCAA	GGTTAGCATGTTCCATCTGCTTTTGCAA	-			P-0032813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	78	455	1	ENST00000380728.2:c.754_781del	p.Leu252SerfsTer84	p.L252Sfs*84	ENST00000380728		252	TTGCAAAAGCAGATGGAACATGCTAACCag/ag																																																																														
XPO1	7514	MSKCC	GRCh37	2	61749764	61749766	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0032813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	141	467	0	ENST00000401558.2:c.281_283del	p.Leu94del	p.L94del	ENST00000401558	NM_003400.3	94	cTTCca/cca																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288638	33288638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	65	388	0	ENST00000374542.5:c.914C>A	p.Pro305His	p.P305H	ENST00000374542	NM_001141970.1	305	cCc/cAc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760279	133760279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	82	421	1	ENST00000318560.5:c.2602G>T	p.Gly868Cys	p.G868C	ENST00000318560	NM_005157.4	868	Ggc/Tgc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222406	53222406	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032813-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	21	609	0	ENST00000375401.3:c.4426G>C	p.Glu1476Gln	p.E1476Q	ENST00000375401	NM_004187.3	1476	Gag/Cag																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125503148	125503148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	45	453	0	ENST00000428830.2:c.515C>T	p.Pro172Leu	p.P172L	ENST00000428830	NM_001114121.2	172	cCa/cTa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130436	29130436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	134	600	0	ENST00000328354.6:c.274C>T	p.Pro92Ser	p.P92S	ENST00000328354	NM_007194.3	92	Ccc/Tcc																																																																														
CASP8	841	MSKCC	GRCh37	2	202151181	202151181	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	37	258	0	ENST00000358485.4:c.1482-1G>A		p.X494_splice	ENST00000358485	NM_001080125.1	494																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	57	435	0	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																														
MYC	4609	MSKCC	GRCh37	8	128750684	128750684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	108	592	0	ENST00000377970.2:c.221C>T	p.Pro74Leu	p.P74L	ENST00000377970	NM_002467.4	74	cCg/cTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095680	178095680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	81	572	0	ENST00000397062.3:c.1651C>T	p.His551Tyr	p.H551Y	ENST00000397062	NM_006164.4	551	Cac/Tac																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410343	63410343	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	141	423	1	ENST00000330258.3:c.2824C>T	p.Arg942Ter	p.R942*	ENST00000330258	NM_152424.3	942	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830889	72830889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	115	583	1	ENST00000268489.5:c.5692G>A	p.Gly1898Arg	p.G1898R	ENST00000268489	NM_006885.3	1898	Ggg/Agg																																																																														
ATR	545	MSKCC	GRCh37	3	142272238	142272238	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	40	299	1	ENST00000350721.4:c.2636C>T	p.Ala879Val	p.A879V	ENST00000350721	NM_001184.3	879	gCc/gTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984837	72984837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	90	440	0	ENST00000268489.5:c.2747G>A	p.Arg916Gln	p.R916Q	ENST00000268489	NM_006885.3	916	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	269	676	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			629	153	712	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087515	27087515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			774	151	748	1	ENST00000324856.7:c.2089C>T	p.Pro697Ser	p.P697S	ENST00000324856	NM_006015.4	697	Ccg/Tcg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441093	149441093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			578	303	716	0	ENST00000286301.3:c.1819G>A	p.Glu607Lys	p.E607K	ENST00000286301	NM_005211.3	607	Gag/Aag																																																																														
SDHB	6390	MSKCC	GRCh37	1	17371347	17371347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	132	582	0	ENST00000375499.3:c.109C>T	p.Pro37Ser	p.P37S	ENST00000375499	NM_003000.2	37	Ccc/Tcc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962358	2962358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			728	167	713	1	ENST00000396946.4:c.2179C>T	p.Pro727Ser	p.P727S	ENST00000396946	NM_032415.4	727	Ccg/Tcg																																																																														
SYK	6850	MSKCC	GRCh37	9	93627369	93627369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	95	499	0	ENST00000375746.1:c.836C>T	p.Ser279Phe	p.S279F	ENST00000375746	NM_001174167.1	279	tCc/tTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98232204	98232204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			223	91	287	0	ENST00000331920.6:c.1738G>A	p.Val580Ile	p.V580I	ENST00000331920	NM_000264.3	580	Gta/Ata																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195632	102195632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	90	461	0	ENST00000263464.3:c.392G>T	p.Ser131Ile	p.S131I	ENST00000263464	NM_001165.4	131	aGt/aTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	84	375	0				ENST00000310581	NM_198253.2																																																																																
NSD1	64324	MSKCC	GRCh37	5	176721394	176721394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201609442		P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	170	519	0	ENST00000439151.2:c.7025C>T	p.Ser2342Leu	p.S2342L	ENST00000439151	NM_022455.4	2342	tCa/tTa																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598898	28598898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			751	168	740	0	ENST00000253063.3:c.458C>T	p.Pro153Leu	p.P153L	ENST00000253063	NM_031459.4	153	cCc/cTc																																																																														
MPL	4352	MSKCC	GRCh37	1	43805073	43805073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	101	618	0	ENST00000372470.3:c.523G>A	p.Asp175Asn	p.D175N	ENST00000372470	NM_005373.2	175	Gat/Aat																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115272905	115272905	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			517	130	728	0	ENST00000438362.2:c.1468A>G	p.Thr490Ala	p.T490A	ENST00000438362	NM_001242891.1	490	Act/Gct																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731171	162731172	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	96	462	3	ENST00000367921.3:c.1026_1027delinsAA	p.Met342_Ala343delinsIleThr	p.M342_A343delinsIT	ENST00000367921	NM_006182.2	342	atGGcc/atAAcc																																																																														
TET1	80312	MSKCC	GRCh37	10	70406025	70406026	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	71	610	0	ENST00000373644.4:c.3539_3540delinsTT	p.Ser1180Phe	p.S1180F	ENST00000373644	NM_030625.2	1180	tCC/tTT																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625392	69625392	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	132	642	0	ENST00000334134.2:c.401A>C	p.Tyr134Ser	p.Y134S	ENST00000334134	NM_005247.2	134	tAc/tCc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118366996	118366996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	89	508	0	ENST00000534358.1:c.5578G>A	p.Asp1860Asn	p.D1860N	ENST00000534358	NM_005933.3	1860	Gac/Aac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244215	46244215	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	80	423	0	ENST00000334344.6:c.2309C>G	p.Pro770Arg	p.P770R	ENST00000334344	NM_152641.2	770	cCa/cGa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447899	49447899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	81	523	0	ENST00000301067.7:c.535G>A	p.Gly179Ser	p.G179S	ENST00000301067	NM_003482.3	179	Ggt/Agt																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784083	120784083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			557	340	923	0	ENST00000257552.2:c.902C>T	p.Pro301Leu	p.P301L	ENST00000257552	NM_002442.3	301	cCc/cTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28599035	28599035	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	82	545	0	ENST00000241453.7:c.2253A>C	p.Gln751His	p.Q751H	ENST00000241453	NM_004119.2	751	caA/caC																																																																														
GREM1	26585	MSKCC	GRCh37	15	33022898	33022898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	62	366	0	ENST00000300177.4:c.7C>T	p.Arg3Cys	p.R3C	ENST00000300177	NM_001191322.1	3	Cgc/Tgc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67459128	67459128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			676	112	706	0	ENST00000327367.4:c.544C>T	p.Pro182Ser	p.P182S	ENST00000327367	NM_005902.3	182	Cct/Tct																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2218123	2218123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			702	173	819	0	ENST00000326181.6:c.185C>T	p.Ser62Phe	p.S62F	ENST00000326181	NM_032271.2	62	tCc/tTc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639908	3639908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	160	679	0	ENST00000294008.3:c.3731G>A	p.Ser1244Asn	p.S1244N	ENST00000294008	NM_032444.2	1244	aGc/aAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3790520	3790520	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	131	661	0	ENST00000262367.5:c.4013T>G	p.Leu1338Trp	p.L1338W	ENST00000262367	NM_004380.2	1338	tTg/tGg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857858	9857858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			575	134	681	0	ENST00000330684.3:c.3543C>A	p.Asn1181Lys	p.N1181K	ENST00000330684	NM_001134407.1	1181	aaC/aaA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858268	9858268	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	69	524	0	ENST00000330684.3:c.3133T>A	p.Ser1045Thr	p.S1045T	ENST00000330684	NM_001134407.1	1045	Tcc/Acc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934903	9934903	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	63	522	0	ENST00000330684.3:c.1387A>C	p.Ile463Leu	p.I463L	ENST00000330684	NM_001134407.1	463	Att/Ctt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984523	72984523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			735	145	790	0	ENST00000268489.5:c.3061G>A	p.Gly1021Ser	p.G1021S	ENST00000268489	NM_006885.3	1021	Ggc/Agc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89824989	89824989	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	94	483	0	ENST00000389301.3:c.2977C>T	p.Gln993Ter	p.Q993*	ENST00000389301	NM_000135.2	993	Caa/Taa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245614	41245614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	98	762	1	ENST00000357654.3:c.1934C>T	p.Ser645Phe	p.S645F	ENST00000357654	NM_007294.3	645	tCt/tTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56434936	56434936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	136	653	1	ENST00000407977.2:c.2201C>T	p.Pro734Leu	p.P734L	ENST00000407977		734	cCc/cTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129673	11129674	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			671	105	687	0	ENST00000344626.4:c.2479_2480delinsTT	p.Pro827Phe	p.P827F	ENST00000344626	NM_003072.3	827	CCc/TTc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213257	39213257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			779	184	872	0	ENST00000402219.2:c.3710C>T	p.Pro1237Leu	p.P1237L	ENST00000402219	NM_005633.3	1237	cCt/cTt																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634843	158634843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	49	301	0	ENST00000263640.3:c.343C>T	p.Pro115Ser	p.P115S	ENST00000263640	NM_001105.4	115	Cct/Tct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212484000	212484000	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	33	393	0	ENST00000342788.4:c.2203G>A	p.Gly735Ser	p.G735S	ENST00000342788	NM_005235.2	735	Ggt/Agt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561324	9561324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	75	542	0	ENST00000353224.5:c.458G>A	p.Gly153Glu	p.G153E	ENST00000353224	NM_177990.2	153	gGa/gAa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31369191	31369191	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	125	538	0	ENST00000328111.2:c.175G>T	p.Glu59Ter	p.E59*	ENST00000328111	NM_006892.3	59	Gag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385207	41385207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	129	573	0	ENST00000373198.4:c.754G>A	p.Val252Ile	p.V252I	ENST00000373198	NM_133170.3	252	Gtc/Atc																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62325739	62325739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			518	102	551	0	ENST00000508582.2:c.3079G>A	p.Asp1027Asn	p.D1027N	ENST00000508582		1027	Gat/Aat																																																																														
RAC2	5880	MSKCC	GRCh37	22	37627401	37627402	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			719	169	746	2	ENST00000249071.6:c.317_318delinsTT	p.Pro106Leu	p.P106L	ENST00000249071	NM_002872.4	106	cCC/cTT																																																																														
EP300	2033	MSKCC	GRCh37	22	41573296	41573296	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			648	133	770	0	ENST00000263253.7:c.5581C>T	p.Gln1861Ter	p.Q1861*	ENST00000263253	NM_001429.3	1861	Caa/Taa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41279561	41279561	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	86	444	0	ENST00000349496.5:c.2131C>T	p.Gln711Ter	p.Q711*	ENST00000349496	NM_001904.3	711	Cag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52685817	52685817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	64	503	0	ENST00000394830.3:c.655G>A	p.Asp219Asn	p.D219N	ENST00000394830	NM_018313.4	219	Gat/Aat																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52712568	52712568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	91	508	0	ENST00000394830.3:c.184G>T	p.Asp62Tyr	p.D62Y	ENST00000394830	NM_018313.4	62	Gat/Tat																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119624625	119624625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	52	437	0	ENST00000316626.5:c.790G>A	p.Asp264Asn	p.D264N	ENST00000316626		264	Gat/Aat																																																																														
ATR	545	MSKCC	GRCh37	3	142212057	142212057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	283	586	0	ENST00000350721.4:c.5995C>T	p.His1999Tyr	p.H1999Y	ENST00000350721	NM_001184.3	1999	Cat/Tat																																																																														
TP63	8626	MSKCC	GRCh37	3	189526178	189526179	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	139	620	0	ENST00000264731.3:c.442_443delinsTT	p.Pro148Phe	p.P148F	ENST00000264731	NM_003722.4	148	CCc/TTc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1962788	1962789	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	69	433	0	ENST00000382891.5:c.3282_3283delinsAA	p.Glu1095Lys	p.E1095K	ENST00000382891	NM_133335.3	1094	ggGGag/ggAAag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467644	66467645	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	62	412	1	ENST00000273854.3:c.624_625delinsAA	p.Gly209Arg	p.G209R	ENST00000273854	NM_004439.5	208	aaGGga/aaAAga																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143181674	143181674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	68	426	0	ENST00000262992.4:c.659G>T	p.Gly220Val	p.G220V	ENST00000262992	NM_001101669.1	220	gGa/gTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67592132	67592132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	86	201	0	ENST00000274335.5:c.1948G>A	p.Glu650Lys	p.E650K	ENST00000274335		650	Gag/Aag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052951	180052951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	338	941	1	ENST00000261937.6:c.1339G>A	p.Ala447Thr	p.A447T	ENST00000261937	NM_182925.4	447	Gcc/Acc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20490599	20490599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			561	115	597	0	ENST00000346618.3:c.1336G>A	p.Asp446Asn	p.D446N	ENST00000346618	NM_001949.4	446	Gat/Aat																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323001	31323001	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			743	93	794	0	ENST00000412585.2:c.896-1G>A		p.X299_splice	ENST00000412585	NM_005514.6	299																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32188337	32188337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			656	140	759	0	ENST00000375023.3:c.1004C>T	p.Ser335Phe	p.S335F	ENST00000375023	NM_004557.3	335	tCt/tTt																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798562	32798562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	79	551	0	ENST00000374899.4:c.1294G>A	p.Asp432Asn	p.D432N	ENST00000374899	NM_018833.2	432	Gat/Aat																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552939	106552939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			675	128	724	1	ENST00000369096.4:c.904C>T	p.Arg302Trp	p.R302W	ENST00000369096	NM_001198.3	302	Cgg/Tgg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553180	106553180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	106	484	0	ENST00000369096.4:c.1145G>A	p.Gly382Asp	p.G382D	ENST00000369096	NM_001198.3	382	gGc/gAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268016	55268016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			647	100	536	0	ENST00000275493.2:c.2856G>A	p.Met952Ile	p.M952I	ENST00000275493	NM_005228.3	952	atG/atA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268018	55268018	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			659	104	545	0	ENST00000275493.2:c.2858T>A	p.Ile953Lys	p.I953K	ENST00000275493	NM_005228.3	953	aTa/aAa																																																																														
HGF	3082	MSKCC	GRCh37	7	81372774	81372775	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	118	335	0	ENST00000222390.5:c.759_760delinsAA	p.Gly254Ser	p.G254S	ENST00000222390	NM_000601.4	253	aaGGgc/aaAAgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875096	151875096	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			54	25	80	0	ENST00000262189.6:c.7443-1G>A		p.X2481_splice	ENST00000262189	NM_170606.2	2481																																																																															
MYC	4609	MSKCC	GRCh37	8	128752835	128752836	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	54	292	0	ENST00000377970.2:c.996_997delinsAA	p.Asp333Asn	p.D333N	ENST00000377970	NM_002467.4	332	aaGGac/aaAAac																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739825	145739825	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	164	799	0	ENST00000428558.2:c.1704+1G>A		p.X568_splice	ENST00000428558	NM_004260.3	568																																																																															
GATA1	2623	MSKCC	GRCh37	X	48650406	48650407	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	129	409	1	ENST00000376670.3:c.376_377delinsAA	p.Gly126Lys	p.G126K	ENST00000376670	NM_002049.3	126	GGa/AAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11317186	11317186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	57	562	0	ENST00000361445.4:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000361445	NM_004958.3	103	cGa/cAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257176	16257176	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	37	641	0	ENST00000375759.3:c.4441G>T	p.Glu1481Ter	p.E1481*	ENST00000375759	NM_015001.2	1481	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087570	27087570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	94	665	0	ENST00000324856.7:c.2144C>T	p.Ser715Leu	p.S715L	ENST00000324856	NM_006015.4	715	tCg/tTg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28605674	28605674	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	95	642	2	ENST00000253063.3:c.1278G>T	p.Lys426Asn	p.K426N	ENST00000253063	NM_031459.4	426	aaG/aaT																																																																														
MPL	4352	MSKCC	GRCh37	1	43812149	43812149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	70	464	0	ENST00000372470.3:c.1014G>T	p.Glu338Asp	p.E338D	ENST00000372470	NM_005373.2	338	gaG/gaT																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78435644	78435644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	96	685	0	ENST00000370768.2:c.176G>A	p.Gly59Asp	p.G59D	ENST00000370768	NM_003902.3	59	gGt/gAt																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176133005	176133005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	63	540	0	ENST00000367669.3:c.588G>T	p.Gln196His	p.Q196H	ENST00000367669	NM_022457.5	196	caG/caT																																																																														
RET	5979	MSKCC	GRCh37	10	43608317	43608317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	116	955	1	ENST00000355710.3:c.1665C>A	p.Phe555Leu	p.F555L	ENST00000355710	NM_020975.4	555	ttC/ttA																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845627	63845627	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	45	237	0	ENST00000279873.7:c.1366G>T	p.Glu456Ter	p.E456*	ENST00000279873	NM_032199.2	456	Gaa/Taa																																																																														
TET1	80312	MSKCC	GRCh37	10	70333183	70333183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	111	780	0	ENST00000373644.4:c.1088C>T	p.Ser363Phe	p.S363F	ENST00000373644	NM_030625.2	363	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	69	555	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	81	564	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910882	114910882	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	39	521	0	ENST00000543371.1:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000543371	NM_001198531.1	334	tCa/tTa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625456	69625456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	88	675	1	ENST00000334134.2:c.337G>A	p.Ala113Thr	p.A113T	ENST00000334134	NM_005247.2	113	Gcc/Acc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94209558	94209558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	42	537	0	ENST00000323929.3:c.556G>A	p.Asp186Asn	p.D186N	ENST00000323929	NM_005591.3	186	Gat/Aat																																																																														
SESN3	143686	MSKCC	GRCh37	11	94917635	94917635	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	68	689	0	ENST00000536441.1:c.886G>T	p.Glu296Ter	p.E296*	ENST00000536441	NM_144665.3	296	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108098519	108098519	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	46	438	0	ENST00000278616.4:c.89T>G	p.Phe30Cys	p.F30C	ENST00000278616	NM_000051.3	30	tTt/tGt																																																																														
ATM	472	MSKCC	GRCh37	11	108139269	108139269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	104	836	1	ENST00000278616.4:c.2771G>A	p.Arg924Gln	p.R924Q	ENST00000278616	NM_000051.3	924	cGg/cAg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	420104	420104	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	103	620	0	ENST00000399788.2:c.3163G>T	p.Glu1055Ter	p.E1055*	ENST00000399788	NM_001042603.1	1055	Gaa/Taa																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992217	11992217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	86	503	0	ENST00000396373.4:c.307C>T	p.Arg103Cys	p.R103C	ENST00000396373	NM_001987.4	103	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49419977	49419977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	81	551	2	ENST00000301067.7:c.15772G>A	p.Ala5258Thr	p.A5258T	ENST00000301067	NM_003482.3	5258	Gcc/Acc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865582	57865583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	68	740	1	ENST00000228682.2:c.3060dup	p.Gly1021ArgfsTer15	p.G1021Rfs*15	ENST00000228682	NM_005269.2	1020	gga/ggAa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112919983	112919983	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	53	549	1	ENST00000351677.2:c.1198G>T	p.Glu400Ter	p.E400*	ENST00000351677	NM_002834.3	400	Gaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	88	639	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549161	21549161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	101	812	1	ENST00000382592.4:c.3115G>A	p.Glu1039Lys	p.E1039K	ENST00000382592	NM_014572.2	1039	Gaa/Aaa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959424	26959424	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	56	609	1	ENST00000381527.3:c.591C>A	p.Phe197Leu	p.F197L	ENST00000381527	NM_001260.1	197	ttC/ttA																																																																														
FLT1	2321	MSKCC	GRCh37	13	28931725	28931726	+	missense_variant	Missense_Mutation	DNP	GC	GC	TA			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	97	641	0	ENST00000282397.4:c.2213_2214delinsTA	p.Gly738Val	p.G738V	ENST00000282397	NM_002019.4	738	gGC/gTA																																																																														
FLT1	2321	MSKCC	GRCh37	13	28931726	28931726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	97	632	0	ENST00000282397.4:c.2213G>T	p.Gly738Val	p.G738V	ENST00000282397	NM_002019.4	738	gGc/gTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32971092	32971092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	87	603	0	ENST00000380152.3:c.9559A>G	p.Asn3187Asp	p.N3187D	ENST00000380152		3187	Aat/Gat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972606	32972606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	98	549	0	ENST00000380152.3:c.9956C>A	p.Ser3319Tyr	p.S3319Y	ENST00000380152		3319	tCt/tAt																																																																														
RB1	5925	MSKCC	GRCh37	13	49050942	49050942	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143105337		P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	59	434	0	ENST00000267163.4:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000267163	NM_000321.2	876	Cgc/Tgc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527907	103527907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	67	419	0	ENST00000355739.4:c.3215G>T	p.Arg1072Ile	p.R1072I	ENST00000355739	NM_000123.3	1072	aGa/aTa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060812	38060812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	84	854	1	ENST00000250448.2:c.1177C>T	p.His393Tyr	p.H393Y	ENST00000250448	NM_004496.3	393	Cac/Tac																																																																														
AKT1	207	MSKCC	GRCh37	14	105243030	105243030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	93	788	1	ENST00000349310.3:c.253G>A	p.Glu85Lys	p.E85K	ENST00000349310	NM_001014432.1	85	Gaa/Aaa																																																																														
MGA	23269	MSKCC	GRCh37	15	42021428	42021428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	73	749	1	ENST00000219905.7:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000219905	NM_001164273.1	1242	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857434	9857434	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	60	584	0	ENST00000330684.3:c.3967A>C	p.Asn1323His	p.N1323H	ENST00000330684	NM_001134407.1	1323	Aat/Cat																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650710	67650710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	139	723	1	ENST00000264010.4:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000264010	NM_006565.3	339	Cgg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29483093	29483093	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	86	724	0	ENST00000358273.4:c.153T>G	p.Phe51Leu	p.F51L	ENST00000358273	NM_001042492.2	51	ttT/ttG																																																																														
NF1	4763	MSKCC	GRCh37	17	29483129	29483129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	88	639	0	ENST00000358273.4:c.189G>T	p.Lys63Asn	p.K63N	ENST00000358273	NM_001042492.2	63	aaG/aaT																																																																														
NF1	4763	MSKCC	GRCh37	17	29557387	29557387	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	36	272	0	ENST00000358273.4:c.3100G>T	p.Glu1034Ter	p.E1034*	ENST00000358273	NM_001042492.2	1034	Gag/Tag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40498592	40498592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	87	540	0	ENST00000264657.5:c.268C>A	p.Leu90Ile	p.L90I	ENST00000264657	NM_139276.2	90	Ctt/Att																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245342	41245342	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	146	863	1	ENST00000357654.3:c.2206G>T	p.Glu736Ter	p.E736*	ENST00000357654	NM_007294.3	736	Gaa/Taa																																																																														
MALT1	10892	MSKCC	GRCh37	18	56414754	56414754	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	103	764	0	ENST00000348428.3:c.2155C>T	p.Arg719Ter	p.R719*	ENST00000348428	NM_006785.3	719	Cga/Tga																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627677	14627677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	83	653	1	ENST00000254322.2:c.393C>A	p.Phe131Leu	p.F131L	ENST00000254322	NM_006145.1	131	ttC/ttA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220942	36220942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	64	451	0	ENST00000222270.7:c.4992C>A	p.Phe1664Leu	p.F1664L	ENST00000222270	NM_014727.1	1664	ttC/ttA																																																																														
ERF	2077	MSKCC	GRCh37	19	42752781	42752781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	92	833	0	ENST00000222329.4:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000222329	NM_006494.2	495	Gaa/Aaa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46588054	46588054	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	89	705	0	ENST00000263734.3:c.604T>G	p.Tyr202Asp	p.Y202D	ENST00000263734	NM_001430.4	202	Tac/Gac																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607794	46607794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	95	849	0	ENST00000263734.3:c.1983C>A	p.Phe661Leu	p.F661L	ENST00000263734	NM_001430.4	661	ttC/ttA																																																																														
MSH2	4436	MSKCC	GRCh37	2	47641447	47641447	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	111	538	0	ENST00000233146.2:c.832G>T	p.Glu278Ter	p.E278*	ENST00000233146	NM_000251.2	278	Gaa/Taa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010565	48010565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	32	344	0	ENST00000234420.5:c.193T>C	p.Ser65Pro	p.S65P	ENST00000234420	NM_000179.2	65	Tca/Cca																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026290	48026290	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147737737		P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	77	555	0	ENST00000234420.5:c.1168G>A	p.Asp390Asn	p.D390N	ENST00000234420	NM_000179.2	390	Gat/Aat																																																																														
XPO1	7514	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	73	637	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	72	637	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99155420	99155420	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	58	513	0	ENST00000074304.5:c.646C>T	p.Arg216Ter	p.R216*	ENST00000074304	NM_001134224.1	216	Cga/Tga																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128036890	128036890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	104	753	1	ENST00000285398.2:c.1589G>A	p.Arg530Gln	p.R530Q	ENST00000285398	NM_000122.1	530	cGa/cAa																																																																														
CASP8	841	MSKCC	GRCh37	2	202137360	202137360	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	39	392	0	ENST00000358485.4:c.589-1G>T		p.X197_splice	ENST00000358485	NM_001080125.1	197																																																																															
IDH1	3417	MSKCC	GRCh37	2	209103887	209103887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	50	534	0	ENST00000345146.2:c.1062C>A	p.Phe354Leu	p.F354L	ENST00000345146	NM_005896.2	354	ttC/ttA																																																																														
CUL3	8452	MSKCC	GRCh37	2	225400355	225400355	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	51	368	0	ENST00000264414.4:c.268C>T	p.Arg90Ter	p.R90*	ENST00000264414	NM_003590.4	90	Cga/Tga																																																																														
TOP1	7150	MSKCC	GRCh37	20	39751841	39751841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	71	452	1	ENST00000361337.2:c.2202G>T	p.Lys734Asn	p.K734N	ENST00000361337	NM_003286.2	734	aaG/aaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713429	40713429	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	87	681	1	ENST00000373198.4:c.4086C>A	p.Tyr1362Ter	p.Y1362*	ENST00000373198	NM_133170.3	1362	taC/taA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	63	579	5	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944523	40944523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	60	644	0	ENST00000373198.4:c.1979C>A	p.Ser660Tyr	p.S660Y	ENST00000373198	NM_133170.3	660	tCt/tAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480466	89480466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	65	408	0	ENST00000336596.2:c.2303C>T	p.Ser768Leu	p.S768L	ENST00000336596	NM_005233.5	768	tCg/tTg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433416	138433416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	130	717	0	ENST00000289153.2:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000289153	NM_006219.2	399	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142257364	142257364	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	93	560	1	ENST00000350721.4:c.3685G>T	p.Glu1229Ter	p.E1229*	ENST00000350721	NM_001184.3	1229	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	80	734	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	70	745	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182679086	182679086	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	66	712	0	ENST00000292782.4:c.448G>T	p.Glu150Ter	p.E150*	ENST00000292782	NM_020640.2	150	Gaa/Taa																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683399	182683399	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	101	583	0	ENST00000292782.4:c.146A>T	p.Glu49Val	p.E49V	ENST00000292782	NM_020640.2	49	gAa/gTa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191026	185191026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	105	817	0	ENST00000265026.3:c.1907C>A	p.Ser636Tyr	p.S636Y	ENST00000265026	NM_004721.4	636	tCt/tAt																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186506931	186506931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	35	307	0	ENST00000323963.5:c.1097G>A	p.Arg366Gln	p.R366Q	ENST00000323963		366	cGa/cAa																																																																														
BCL6	604	MSKCC	GRCh37	3	187447057	187447057	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	130	759	0	ENST00000232014.4:c.1136A>C	p.Lys379Thr	p.K379T	ENST00000232014	NM_001130845.1	379	aAg/aCg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807537	1807537	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146672976		P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	73	770	1	ENST00000260795.2:c.1706C>T	p.Ala569Val	p.A569V	ENST00000260795		569	gCg/gTg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55130090	55130090	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	64	569	0	ENST00000257290.5:c.624A>C	p.Leu208Phe	p.L208F	ENST00000257290	NM_006206.4	208	ttA/ttC																																																																														
TET2	54790	MSKCC	GRCh37	4	106193884	106193884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	69	422	0	ENST00000380013.4:c.4346C>A	p.Ser1449Tyr	p.S1449Y	ENST00000380013	NM_001127208.2	1449	tCt/tAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541900	187541900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	62	722	0	ENST00000441802.2:c.5840G>A	p.Arg1947His	p.R1947H	ENST00000441802	NM_005245.3	1947	cGc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541982	187541982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	65	678	1	ENST00000441802.2:c.5758G>A	p.Glu1920Lys	p.E1920K	ENST00000441802	NM_005245.3	1920	Gaa/Aaa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31409391	31409391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	77	547	0	ENST00000344624.3:c.3716C>T	p.Thr1239Ile	p.T1239I	ENST00000344624		1239	aCt/aTt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86681198	86681198	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	27	410	0	ENST00000274376.6:c.2839G>T	p.Gly947Ter	p.G947*	ENST00000274376	NM_002890.2	947	Gga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86686647	86686647	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	44	359	1	ENST00000274376.6:c.3091G>T	p.Glu1031Ter	p.E1031*	ENST00000274376	NM_002890.2	1031	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175166	112175166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371113837		P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	33	320	0	ENST00000257430.4:c.3875C>T	p.Thr1292Met	p.T1292M	ENST00000257430	NM_000038.5	1292	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112175370	112175370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	67	358	0	ENST00000257430.4:c.4079C>T	p.Ser1360Phe	p.S1360F	ENST00000257430	NM_000038.5	1360	tCt/tTt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131911514	131911514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143802516		P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	90	557	0	ENST00000265335.6:c.259C>T	p.Arg87Cys	p.R87C	ENST00000265335		87	Cgt/Tgt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131915160	131915160	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	93	678	0	ENST00000265335.6:c.517A>G	p.Lys173Glu	p.K173E	ENST00000265335		173	Aag/Gag																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287935	33287935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	63	553	0	ENST00000374542.5:c.1318G>T	p.Asp440Tyr	p.D440Y	ENST00000374542	NM_001141970.1	440	Gat/Tat																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793603	89793603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	29	406	0	ENST00000336032.3:c.672G>T	p.Lys224Asn	p.K224N	ENST00000336032	NM_006813.2	224	aaG/aaT																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555027	106555027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	87	505	2	ENST00000369096.4:c.2144C>T	p.Ala715Val	p.A715V	ENST00000369096	NM_001198.3	715	gCg/gTg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117642538	117642538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	130	768	0	ENST00000368508.3:c.5661G>T	p.Lys1887Asn	p.K1887N	ENST00000368508	NM_002944.2	1887	aaG/aaT																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001305	150001305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	55	724	0	ENST00000253339.5:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000253339		767	Cgt/Tgt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023019	150023019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	66	847	0	ENST00000253339.5:c.244C>T	p.Arg82Ter	p.R82*	ENST00000253339		82	Cga/Tga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265353	152265353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188957694		P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	79	473	0	ENST00000206249.3:c.806G>A	p.Arg269His	p.R269H	ENST00000206249	NM_000125.3	269	cGc/cAc																																																																														
PARK2	5071	MSKCC	GRCh37	6	161781201	161781201	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55830907		P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	70	752	0	ENST00000366898.1:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000366898	NM_004562.2	402	Cgt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211050	55211050	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17289589		P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	71	682	0	ENST00000275493.2:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000275493	NM_005228.3	98	cGa/cAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508169	106508169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	27	284	0	ENST00000359195.3:c.163G>A	p.Glu55Lys	p.E55K	ENST00000359195	NM_002649.2	55	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116340294	116340294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	80	385	1	ENST00000397752.3:c.1156C>T	p.Leu386Phe	p.L386F	ENST00000397752	NM_000245.2	386	Ctc/Ttc																																																																														
BRAF	673	MSKCC	GRCh37	7	140476884	140476884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	72	595	0	ENST00000288602.6:c.1522A>G	p.Thr508Ala	p.T508A	ENST00000288602	NM_004333.4	508	Aca/Gca																																																																														
EZH2	2146	MSKCC	GRCh37	7	148526853	148526853	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	85	615	0	ENST00000320356.2:c.451A>T	p.Lys151Ter	p.K151*	ENST00000320356	NM_004456.4	151	Aaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845367	151845367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	103	758	1	ENST00000262189.6:c.13645C>T	p.Arg4549Cys	p.R4549C	ENST00000262189	NM_170606.2	4549	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878061	151878061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	72	557	0	ENST00000262189.6:c.6884C>T	p.Ala2295Val	p.A2295V	ENST00000262189	NM_170606.2	2295	gCc/gTc																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38184373	38184373	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	63	490	0	ENST00000317025.8:c.1583G>A	p.Gly528Glu	p.G528E	ENST00000317025	NM_023034.1	528	gGa/gAa																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737101	145737101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	74	696	1	ENST00000428558.2:c.3465C>A	p.Phe1155Leu	p.F1155L	ENST00000428558	NM_004260.3	1155	ttC/ttA																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054643	5054643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	28	418	0	ENST00000381652.3:c.695G>T	p.Arg232Ile	p.R232I	ENST00000381652	NM_004972.3	232	aGa/aTa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069023	5069023	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	19	307	0	ENST00000381652.3:c.1328G>A	p.Arg443Gln	p.R443Q	ENST00000381652	NM_004972.3	443	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319965	8319965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs141403124		P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	26	310	0	ENST00000356435.5:c.5536G>A	p.Ala1846Thr	p.A1846T	ENST00000356435		1846	Gcg/Acg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340461	8340461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	92	514	0	ENST00000356435.5:c.5135A>G	p.Lys1712Arg	p.K1712R	ENST00000356435		1712	aAa/aGa																																																																														
TEK	7010	MSKCC	GRCh37	9	27185512	27185512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	85	666	0	ENST00000380036.4:c.1212C>A	p.Phe404Leu	p.F404L	ENST00000380036	NM_000459.3	404	ttC/ttA																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412494	80412494	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	69	442	1	ENST00000286548.4:c.547C>T	p.Arg183Ter	p.R183*	ENST00000286548	NM_002072.3	183	Cga/Tga																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891278	101891278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	102	736	0	ENST00000374994.4:c.239G>A	p.Arg80Gln	p.R80Q	ENST00000374994	NM_004612.2	80	cGa/cAa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915951	127915951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	103	629	0	ENST00000373547.4:c.530G>A	p.Arg177Gln	p.R177Q	ENST00000373547	NM_002721.4	177	cGa/cAa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401004	139401004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	41	644	3	ENST00000277541.6:c.3989G>A	p.Arg1330His	p.R1330H	ENST00000277541	NM_017617.3	1330	cGc/cAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923634	39923634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	108	711	3	ENST00000378444.4:c.3457C>A	p.Pro1153Thr	p.P1153T	ENST00000378444	NM_001123385.1	1153	Cca/Aca																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224247	53224247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	77	732	0	ENST00000375401.3:c.3304C>A	p.Leu1102Ile	p.L1102I	ENST00000375401	NM_004187.3	1102	Ctc/Atc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226043	53226043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	114	787	0	ENST00000375401.3:c.2806C>T	p.Arg936Cys	p.R936C	ENST00000375401	NM_004187.3	936	Cgc/Tgc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411575	63411575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	67	790	0	ENST00000330258.3:c.1592G>A	p.Arg531Gln	p.R531Q	ENST00000330258	NM_152424.3	531	cGa/cAa																																																																														
AR	367	MSKCC	GRCh37	X	66765677	66765677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	126	940	0	ENST00000374690.3:c.689C>T	p.Ser230Leu	p.S230L	ENST00000374690	NM_000044.3	230	tCg/tTg																																																																														
AR	367	MSKCC	GRCh37	X	66942737	66942737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	64	638	0	ENST00000374690.3:c.2518G>A	p.Asp840Asn	p.D840N	ENST00000374690	NM_000044.3	840	Gat/Aat																																																																														
ATRX	546	MSKCC	GRCh37	X	76814238	76814238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	59	496	1	ENST00000373344.5:c.6406G>A	p.Asp2136Asn	p.D2136N	ENST00000373344	NM_000489.3	2136	Gac/Aac																																																																														
ATRX	546	MSKCC	GRCh37	X	76829806	76829806	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	75	601	1	ENST00000373344.5:c.6235C>T	p.Arg2079Ter	p.R2079*	ENST00000373344	NM_000489.3	2079	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76854897	76854897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	56	763	1	ENST00000373344.5:c.5939C>A	p.Ser1980Tyr	p.S1980Y	ENST00000373344	NM_000489.3	1980	tCt/tAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76938029	76938029	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	102	817	0	ENST00000373344.5:c.2719C>T	p.Arg907Ter	p.R907*	ENST00000373344	NM_000489.3	907	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76940445	76940445	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs45572441		P-0036297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	84	650	0	ENST00000373344.5:c.648G>T	p.Met216Ile	p.M216I	ENST00000373344	NM_000489.3	216	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	586	637	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610348	10610349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	164	844	0	ENST00000171111.5:c.361dup	p.Glu121GlyfsTer6	p.E121Gfs*6	ENST00000171111	NM_203500.1	121	gag/gGag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861900	57861900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	159	593	0	ENST00000228682.2:c.1201G>C	p.Gly401Arg	p.G401R	ENST00000228682	NM_005269.2	401	Ggc/Cgc																																																																														
SETD8	387893	MSKCC	GRCh37	12	123889498	123889498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			69	34	155	0	ENST00000330479.4:c.725T>C	p.Val242Ala	p.V242A	ENST00000330479	NM_020382.3	242	gTg/gCg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610638	81610638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	80	428	0	ENST00000298171.2:c.2236C>A	p.His746Asn	p.H746N	ENST00000298171	NM_000369.2	746	Cat/Aat																																																																														
YES1	7525	MSKCC	GRCh37	18	736958	736958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			147	126	463	0	ENST00000314574.4:c.1141G>T	p.Ala381Ser	p.A381S	ENST00000314574	NM_005433.3	381	Gct/Tct																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683689	162683689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	141	614	0	ENST00000366898.1:c.280G>A	p.Gly94Ser	p.G94S	ENST00000366898	NM_004562.2	94	Ggc/Agc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739634	41739634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	119	666	0	ENST00000242208.4:c.339G>C	p.Met113Ile	p.M113I	ENST00000242208	NM_002192.2	113	atG/atC																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045022	47045022	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			93	145	364	0	ENST00000329236.7:c.2114del	p.Leu705ProfsTer19	p.L705Pfs*19	ENST00000329236	NM_001204466.1	705	cTc/cc																																																																														
NF1	4763	MSKCC	GRCh37	17	29587385	29587385	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0036698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	176	224	0	ENST00000358273.4:c.4431-2A>C		p.X1477_splice	ENST00000358273	NM_001042492.2	1477																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11136101	11136101	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	217	624	0	ENST00000344626.4:c.3085A>C	p.Lys1029Gln	p.K1029Q	ENST00000344626	NM_003072.3	1029	Aaa/Caa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	142	576	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41568656	41568656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	82	293	0	ENST00000263253.7:c.4606G>A	p.Glu1536Lys	p.E1536K	ENST00000263253	NM_001429.3	1536	Gaa/Aaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26101089	26101089	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	117	467	0	ENST00000435504.4:c.3G>A	p.Met1?	p.M1?	ENST00000435504		1	atG/atA																																																																														
CDC73	79577	MSKCC	GRCh37	1	193119483	193119483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	80	314	0	ENST00000367435.3:c.878A>G	p.Tyr293Cys	p.Y293C	ENST00000367435	NM_024529.4	293	tAc/tGc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912435	50912435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	235	749	1	ENST00000440232.2:c.1949C>T	p.Ser650Leu	p.S650L	ENST00000440232	NM_002691.3	650	tCa/tTa																																																																														
EP300	2033	MSKCC	GRCh37	22	41537076	41537076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	93	264	0	ENST00000263253.7:c.1903G>A	p.Glu635Lys	p.E635K	ENST00000263253	NM_001429.3	635	Gag/Aag																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197187	26197187	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	152	481	0	ENST00000356476.2:c.292G>T	p.Glu98Ter	p.E98*	ENST00000356476		98	Gag/Tag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797313	135797313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	85	213	0	ENST00000298552.3:c.556G>C	p.Ala186Pro	p.A186P	ENST00000298552	NM_001162426.1	186	Gca/Cca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	131	434	0				ENST00000310581	NM_198253.2																																																																																
ELF3	1999	MSKCC	GRCh37	1	201981516	201981516	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	239	815	0	ENST00000359651.3:c.430G>C	p.Glu144Gln	p.E144Q	ENST00000359651		144	Gag/Cag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948187	71948187	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	263	928	0	ENST00000298229.2:c.2899C>G	p.Pro967Ala	p.P967A	ENST00000298229	NM_001567.3	967	Cct/Gct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448455	49448455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	179	509	0	ENST00000301067.7:c.256G>C	p.Glu86Gln	p.E86Q	ENST00000301067	NM_003482.3	86	Gag/Cag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495696	56495696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	131	452	0	ENST00000267101.3:c.3886C>T	p.Gln1296Ter	p.Q1296*	ENST00000267101	NM_001982.3	1296	Cag/Tag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112538	2112538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	256	766	0	ENST00000219476.3:c.1298C>T	p.Ser433Phe	p.S433F	ENST00000219476	NM_000548.3	433	tCc/tTc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14038605	14038605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	85	242	0	ENST00000311895.7:c.1930G>A	p.Glu644Lys	p.E644K	ENST00000311895	NM_005236.2	644	Gaa/Aaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41568593	41568593	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	148	514	0	ENST00000263253.7:c.4543G>T	p.Glu1515Ter	p.E1515*	ENST00000263253	NM_001429.3	1515	Gaa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47129701	47129701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	125	444	0	ENST00000409792.3:c.5179G>A	p.Glu1727Lys	p.E1727K	ENST00000409792	NM_014159.6	1727	Gag/Aag																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138198296	138198296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	104	279	0	ENST00000237289.4:c.889G>C	p.Glu297Gln	p.E297Q	ENST00000237289	NM_001270507.1	297	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	290	559	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
BLM	641	MSKCC	GRCh37	15	91306198	91306198	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0036705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	73	341	0	ENST00000355112.3:c.1885A>T	p.Lys629Ter	p.K629*	ENST00000355112	NM_000057.2	629	Aag/Tag																																																																														
BLM	641	MSKCC	GRCh37	15	91306207	91306207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	76	363	0	ENST00000355112.3:c.1894C>G	p.Gln632Glu	p.Q632E	ENST00000355112	NM_000057.2	632	Caa/Gaa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626101	12626101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	172	410	0	ENST00000251849.4:c.1859C>T	p.Ala620Val	p.A620V	ENST00000251849	NM_002880.3	620	gCt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	40	424	0				ENST00000310581	NM_198253.2																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139413042	139413042	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0036706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	39	449	0	ENST00000277541.6:c.1099+1G>C		p.X367_splice	ENST00000277541	NM_017617.3	367																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970897	21970914	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	INS	TCACCTGAGGGACCTTCC	TCACCTGAGGGACCTTCC	AGATCATCAGTCCAGACCTTT			P-0036706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	37	797	0	ENST00000304494.5:c.444_457+4delinsAAAGGTCTGGACTGATGATCT		p.X148_splice	ENST00000304494	NM_000077.4	148																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970897	21970914	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	INS	TCACCTGAGGGACCTTCC	TCACCTGAGGGACCTTCC	AGATCATCAGTCCAGACCTTT			P-0036706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	37	797	0	ENST00000304494.5:c.444_457+4delinsAAAGGTCTGGACTGATGATCT		p.X148_splice	ENST00000304494	NM_000077.4	148																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0036708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	25	508	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692780	89692780	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0036708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	17	418	0	ENST00000371953.3:c.264T>A	p.Tyr88Ter	p.Y88*	ENST00000371953	NM_000314.4	88	taT/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	173	677	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562746	29562746	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	93	426	0	ENST00000358273.4:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000358273	NM_001042492.2	1276	Cga/Tga																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94203792	94203792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	23	189	0	ENST00000323929.3:c.862C>T	p.Arg288Cys	p.R288C	ENST00000323929	NM_005591.3	288	Cgt/Tgt																																																																														
CDH1	999	MSKCC	GRCh37	16	68845689	68845689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	176	537	0	ENST00000261769.5:c.935C>T	p.Pro312Leu	p.P312L	ENST00000261769	NM_004360.3	312	cCt/cTt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982419	25982419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	106	332	0	ENST00000435504.4:c.871A>G	p.Thr291Ala	p.T291A	ENST00000435504		291	Aca/Gca																																																																														
MST1	4485	MSKCC	GRCh37	3	49723603	49723620	+	inframe_deletion	In_Frame_Del	DEL	GGCAGAAGTTCTCCCGAA	GGCAGAAGTTCTCCCGAA	-			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	35	121	0	ENST00000449682.2:c.1022_1039del	p.Leu341_Cys346del	p.L341_C346del	ENST00000449682	NM_020998.3	341	cTTCGGGAGAACTTCTGCCgg/cgg																																																																														
APC	324	MSKCC	GRCh37	5	112173394	112173394	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	24	258	1	ENST00000257430.4:c.2107del	p.Ala703GlnfsTer15	p.A703Qfs*15	ENST00000257430	NM_000038.5	701	atG/at																																																																														
HGF	3082	MSKCC	GRCh37	7	81335062	81335062	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	83	281	0	ENST00000222390.5:c.1765G>T	p.Val589Phe	p.V589F	ENST00000222390	NM_000601.4	589	Gtc/Ttc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034465	47034465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	203	615	2	ENST00000329236.7:c.319G>A	p.Ala107Thr	p.A107T	ENST00000329236	NM_001204466.1	107	Gct/Act																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	98	391	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500886	8500886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	69	581	0	ENST00000356435.5:c.1996C>T	p.Pro666Ser	p.P666S	ENST00000356435		666	Cct/Tct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916933	178916933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	232	495	0	ENST00000263967.3:c.320A>G	p.Asn107Ser	p.N107S	ENST00000263967	NM_006218.2	107	aAc/aGc																																																																														
MPL	4352	MSKCC	GRCh37	1	43805675	43805675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	129	550	0	ENST00000372470.3:c.731C>T	p.Ser244Leu	p.S244L	ENST00000372470	NM_005373.2	244	tCa/tTa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944121	71944121	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	143	627	0	ENST00000298229.2:c.1954G>A	p.Glu652Lys	p.E652K	ENST00000298229	NM_001567.3	652	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3790476	3790476	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	76	631	0	ENST00000262367.5:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000262367	NM_004380.2	1353	Gaa/Taa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14022042	14022042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	87	569	0	ENST00000311895.7:c.742G>C	p.Glu248Gln	p.E248Q	ENST00000311895	NM_005236.2	248	Gaa/Caa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288841	15288841	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	31	180	0	ENST00000263388.2:c.3898G>C	p.Val1300Leu	p.V1300L	ENST00000263388	NM_000435.2	1300	Gtg/Ctg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972626	25972626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	238	468	0	ENST00000435504.4:c.1799C>T	p.Ser600Leu	p.S600L	ENST00000435504		600	tCa/tTa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972713	25972713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	254	521	0	ENST00000435504.4:c.1712C>T	p.Ser571Phe	p.S571F	ENST00000435504		571	tCc/tTc																																																																														
ATR	545	MSKCC	GRCh37	3	142281685	142281685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	168	584	0	ENST00000350721.4:c.559G>A	p.Gly187Arg	p.G187R	ENST00000350721	NM_001184.3	187	Gga/Aga																																																																														
TP63	8626	MSKCC	GRCh37	3	189582020	189582020	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	400	325	0	ENST00000264731.3:c.580-1G>T		p.X194_splice	ENST00000264731	NM_003722.4	194																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153332724	153332724	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	501	574	0	ENST00000281708.4:c.232G>T	p.Glu78Ter	p.E78*	ENST00000281708	NM_033632.3	78	Gaa/Taa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131939083	131939083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	111	372	0	ENST00000265335.6:c.2299G>T	p.Asp767Tyr	p.D767Y	ENST00000265335		767	Gac/Tac																																																																														
CCND3	896	MSKCC	GRCh37	6	41903783	41903784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	354	651	0	ENST00000372991.4:c.772_773dup	p.Ser259ProfsTer46	p.S259Pfs*46	ENST00000372991	NM_001760.3	258	gcc/gcGCc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880121	151880121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	308	533	0	ENST00000262189.6:c.5203C>T	p.Leu1735Phe	p.L1735F	ENST00000262189	NM_170606.2	1735	Ctt/Ttt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945568	151945568	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	126	246	0	ENST00000262189.6:c.1951G>T	p.Glu651Ter	p.E651*	ENST00000262189	NM_170606.2	651	Gaa/Taa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430665	80430665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	93	566	0	ENST00000286548.4:c.343G>A	p.Glu115Lys	p.E115K	ENST00000286548	NM_002072.3	115	Gaa/Aaa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270457	98270457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	191	599	0	ENST00000331920.6:c.187G>C	p.Glu63Gln	p.E63Q	ENST00000331920	NM_000264.3	63	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578500	7578505	+	inframe_deletion	In_Frame_Del	DEL	GCACAG	GCACAG	-			P-0036730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	493	890	0	ENST00000269305.4:c.425_430del	p.Pro142_Val143del	p.P142_V143del	ENST00000269305	NM_001126112.2	142	cCTGTGCag/cag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777747	3777747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	82	934	0	ENST00000262367.5:c.7301C>T	p.Thr2434Met	p.T2434M	ENST00000262367	NM_004380.2	2434	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	385	663	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46605102	46605102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	63	694	0	ENST00000263734.3:c.1319C>T	p.Thr440Met	p.T440M	ENST00000263734	NM_001430.4	440	aCg/aTg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719504	61719504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	376	555	0	ENST00000401558.2:c.1679A>G	p.Lys560Arg	p.K560R	ENST00000401558	NM_003400.3	560	aAa/aGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	184	522	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KIT	3815	MSKCC	GRCh37	4	55573291	55573291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	24	345	0	ENST00000288135.5:c.953T>C	p.Met318Thr	p.M318T	ENST00000288135	NM_000222.2	318	aTg/aCg																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84388636	84388636	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	66	506	0	ENST00000321945.7:c.652A>G	p.Met218Val	p.M218V	ENST00000321945	NM_139076.2	218	Atg/Gtg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	141	487	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538178	187538178	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	171	553	0	ENST00000441802.2:c.9056A>G	p.Asn3019Ser	p.N3019S	ENST00000441802	NM_005245.3	3019	aAc/aGc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39074230	39074230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	66	386	0	ENST00000357387.3:c.80C>G	p.Pro27Arg	p.P27R	ENST00000357387	NM_152756.3	27	cCg/cGg																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	212	360	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057599	180057599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	493	860	0	ENST00000261937.6:c.356G>A	p.Arg119His	p.R119H	ENST00000261937	NM_182925.4	119	cGc/cAc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	47	427	1	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618629	37618629	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	26	405	0	ENST00000447079.4:c.305C>A	p.Ser102Ter	p.S102*	ENST00000447079	NM_015083.1	102	tCa/tAa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572456	95572458	+	missense_variant	Missense_Mutation	ONP	TCT	TCT	AAG			P-0036734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	16	407	0	ENST00000343455.3:c.2907_2909delinsCTT	p.Glu970Leu	p.E970L	ENST00000343455	NM_177438.2	969	gcAGAa/gcCTTa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657673	37657673	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	26	427	0	ENST00000447079.4:c.2590A>G	p.Asn864Asp	p.N864D	ENST00000447079	NM_015083.1	864	Aac/Gac																																																																														
MTOR	2475	MSKCC	GRCh37	1	11316062	11316062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	41	434	0	ENST00000361445.4:c.692C>T	p.Pro231Leu	p.P231L	ENST00000361445	NM_004958.3	231	cCt/cTt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258976	16258976	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	73	533	0	ENST00000375759.3:c.6241C>T	p.Arg2081Ter	p.R2081*	ENST00000375759	NM_015001.2	2081	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259787	16259787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	32	470	0	ENST00000375759.3:c.7052C>T	p.Pro2351Leu	p.P2351L	ENST00000375759	NM_015001.2	2351	cCt/cTt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797482	45797482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	86	774	1	ENST00000372115.3:c.995C>T	p.Ser332Leu	p.S332L	ENST00000372115	NM_001048171.1	332	tCg/tTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120459013	120459013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	30	777	0	ENST00000256646.2:c.6332C>T	p.Thr2111Ile	p.T2111I	ENST00000256646	NM_024408.3	2111	aCc/aTc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104309776	104309776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	28	638	2	ENST00000369902.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000369902	NM_016169.3	123	Cgt/Tgt																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112724348	112724349	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	22	518	1	ENST00000369452.4:c.232_233delinsTT	p.Ala78Leu	p.A78L	ENST00000369452	NM_007373.3	78	GCa/TTa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123244913	123244913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	22	827	1	ENST00000358487.5:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000358487	NM_000141.4	731	Gaa/Aaa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123260410	123260410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	25	601	0	ENST00000358487.5:c.1491G>A	p.Met497Ile	p.M497I	ENST00000358487	NM_000141.4	497	atG/atA																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154345	2154345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	38	809	0	ENST00000434045.2:c.583G>A	p.Gly195Ser	p.G195S	ENST00000434045	NM_001127598.1	195	Ggt/Agt																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588223	69588223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	29	590	0	ENST00000168712.1:c.475G>A	p.Glu159Lys	p.E159K	ENST00000168712	NM_002007.2	159	Gag/Aag																																																																														
PGR	5241	MSKCC	GRCh37	11	100933481	100933481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	20	263	0	ENST00000325455.5:c.1909C>G	p.Arg637Gly	p.R637G	ENST00000325455	NM_001202474.3	637	Cga/Gga																																																																														
ATM	472	MSKCC	GRCh37	11	108121493	108121493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	35	401	0	ENST00000278616.4:c.1301C>T	p.Pro434Leu	p.P434L	ENST00000278616	NM_000051.3	434	cCa/cTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544065	18544065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	21	298	0	ENST00000266497.5:c.1882C>T	p.Pro628Ser	p.P628S	ENST00000266497		628	Cca/Tca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641411	18641411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	16	293	0	ENST00000266497.5:c.2410T>C	p.Tyr804His	p.Y804H	ENST00000266497		804	Tat/Cat																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628639	21628639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	14	665	0	ENST00000421138.2:c.1069C>T	p.His357Tyr	p.H357Y	ENST00000421138		357	Cat/Tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442998	49442998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	67	479	0	ENST00000301067.7:c.3910C>T	p.Arg1304Cys	p.R1304C	ENST00000301067	NM_003482.3	1304	Cgc/Tgc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858477	57858477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	75	632	0	ENST00000228682.2:c.215G>A	p.Arg72Gln	p.R72Q	ENST00000228682	NM_005269.2	72	cGg/cAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133254193	133254193	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146592584		P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	26	585	0	ENST00000320574.5:c.691C>T	p.Arg231Cys	p.R231C	ENST00000320574	NM_006231.2	231	Cgc/Tgc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578193	28578193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	28	517	0	ENST00000241453.7:c.2978C>T	p.Ser993Leu	p.S993L	ENST00000241453	NM_004119.2	993	tCg/tTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893595	28893595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	58	458	0	ENST00000282397.4:c.3251C>T	p.Ser1084Phe	p.S1084F	ENST00000282397	NM_002019.4	1084	tCt/tTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28903809	28903809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	82	642	0	ENST00000282397.4:c.2650C>T	p.His884Tyr	p.H884Y	ENST00000282397	NM_002019.4	884	Cac/Tac																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133781	41133781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	37	396	0	ENST00000379561.5:c.1847C>T	p.Ser616Phe	p.S616F	ENST00000379561	NM_002015.3	616	tCc/tTc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987076	36987076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	33	765	0	ENST00000354822.5:c.613G>A	p.Glu205Lys	p.E205K	ENST00000354822	NM_001079668.2	205	Gag/Aag																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610228	81610228	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139352934		P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	32	448	0	ENST00000298171.2:c.1826G>A	p.Arg609Gln	p.R609Q	ENST00000298171	NM_000369.2	609	cGa/cAa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569888	95569888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	30	396	0	ENST00000343455.3:c.3845C>T	p.Ser1282Phe	p.S1282F	ENST00000343455	NM_177438.2	1282	tCt/tTt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43783949	43783949	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	30	445	0	ENST00000382044.4:c.289C>T	p.Pro97Ser	p.P97S	ENST00000382044	NM_001141980.1	97	Cct/Tct																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774207	66774207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	33	879	0	ENST00000307102.5:c.683C>T	p.Ser228Phe	p.S228F	ENST00000307102	NM_002755.3	228	tCc/tTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423503	88423503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	31	605	1	ENST00000360948.2:c.2332G>A	p.Glu778Lys	p.E778K	ENST00000360948	NM_001012338.2	778	Gag/Aag																																																																														
BLM	641	MSKCC	GRCh37	15	91293001	91293001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	24	643	0	ENST00000355112.3:c.503C>T	p.Ser168Leu	p.S168L	ENST00000355112	NM_000057.2	168	tCa/tTa																																																																														
BLM	641	MSKCC	GRCh37	15	91303447	91303447	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	20	466	0	ENST00000355112.3:c.1158T>G	p.Ile386Met	p.I386M	ENST00000355112	NM_000057.2	386	atT/atG																																																																														
BLM	641	MSKCC	GRCh37	15	91358397	91358397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	32	646	0	ENST00000355112.3:c.4142C>T	p.Ser1381Leu	p.S1381L	ENST00000355112	NM_000057.2	1381	tCa/tTa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121909	2121909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	32	885	1	ENST00000219476.3:c.2071C>T	p.Arg691Cys	p.R691C	ENST00000219476	NM_000548.3	691	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900491	3900491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	31	885	0	ENST00000262367.5:c.605C>T	p.Ser202Leu	p.S202L	ENST00000262367	NM_004380.2	202	tCa/tTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858019	9858019	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	32	574	0	ENST00000330684.3:c.3382T>A	p.Phe1128Ile	p.F1128I	ENST00000330684	NM_001134407.1	1128	Ttc/Atc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858028	9858028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	31	579	0	ENST00000330684.3:c.3373G>A	p.Glu1125Lys	p.E1125K	ENST00000330684	NM_001134407.1	1125	Gag/Aag																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128033	30128033	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	38	720	0	ENST00000263025.4:c.1096C>T	p.Gln366Ter	p.Q366*	ENST00000263025	NM_002746.2	366	Cag/Tag																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813723	50813723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	32	679	0	ENST00000398568.2:c.1277C>T	p.Thr426Ile	p.T426I	ENST00000398568	NM_001042412.1	426	aCc/aTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832591	72832592	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	16	347	0	ENST00000268489.5:c.3989_3990delinsTA	p.Lys1330Ile	p.K1330I	ENST00000268489	NM_006885.3	1330	aAG/aTA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923722	72923722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	47	692	0	ENST00000268489.5:c.3356G>A	p.Arg1119Gln	p.R1119Q	ENST00000268489	NM_006885.3	1119	cGa/cAa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89815176	89815176	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	32	495	0	ENST00000389301.3:c.3240-1G>A		p.X1080_splice	ENST00000389301	NM_000135.2	1080																																																																															
FANCA	2175	MSKCC	GRCh37	16	89862377	89862377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	31	698	1	ENST00000389301.3:c.943C>T	p.Pro315Ser	p.P315S	ENST00000389301	NM_000135.2	315	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	65	564	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	51	622	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29528489	29528489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	34	503	0	ENST00000358273.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000358273	NM_001042492.2	416	Cga/Tga																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59821940	59821940	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	31	421	0	ENST00000259008.2:c.2110T>G	p.Leu704Val	p.L704V	ENST00000259008	NM_032043.2	704	Tta/Gta																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59937198	59937198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	65	484	0	ENST00000259008.2:c.164C>T	p.Ala55Val	p.A55V	ENST00000259008	NM_032043.2	55	gCc/gTc																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732329	74732329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	43	308	0	ENST00000359995.5:c.580C>T	p.Pro194Ser	p.P194S	ENST00000359995	NM_001195427.1	194	Cca/Tca																																																																														
MALT1	10892	MSKCC	GRCh37	18	56400676	56400676	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	42	348	0	ENST00000348428.3:c.1270T>C	p.Phe424Leu	p.F424L	ENST00000348428	NM_006785.3	424	Ttc/Ctc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110201	3110201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	63	746	0	ENST00000078429.4:c.191G>A	p.Gly64Asp	p.G64D	ENST00000078429	NM_002067.2	64	gGc/gAc																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117551	4117551	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	37	422	0	ENST00000262948.5:c.169T>G	p.Phe57Val	p.F57V	ENST00000262948	NM_030662.3	57	Ttt/Gtt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247910	10247910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	55	689	0	ENST00000340748.4:c.4292C>T	p.Ala1431Val	p.A1431V	ENST00000340748		1431	gCc/gTc																																																																														
CALR	811	MSKCC	GRCh37	19	13054707	13054707	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	45	324	0	ENST00000316448.5:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000316448	NM_004343.3	412	Cag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271633	15271633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	23	992	1	ENST00000263388.2:c.6806C>T	p.Ser2269Phe	p.S2269F	ENST00000263388	NM_000435.2	2269	tCc/tTc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17387305	17387305	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	65	690	0	ENST00000359435.4:c.571C>T	p.Gln191Ter	p.Q191*	ENST00000359435	NM_001033549.1	191	Cag/Tag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18975030	18975030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	37	376	0	ENST00000262803.5:c.2827C>T	p.Pro943Ser	p.P943S	ENST00000262803	NM_002911.3	943	Cca/Tca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36227722	36227724	+	missense_variant	Missense_Mutation	ONP	TTG	TTG	CCC			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	28	623	0	ENST00000222270.7:c.7291_7293delinsCCC	p.Leu2431Pro	p.L2431P	ENST00000222270	NM_014727.1	2431	TTG/CCC																																																																														
AXL	558	MSKCC	GRCh37	19	41765640	41765640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	80	715	0	ENST00000301178.4:c.2516G>A	p.Gly839Glu	p.G839E	ENST00000301178	NM_021913.4	839	gGa/gAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42793475	42793475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	65	789	0	ENST00000575354.2:c.1277C>T	p.Ser426Phe	p.S426F	ENST00000575354	NM_015125.3	426	tCt/tTt																																																																														
CIC	23152	MSKCC	GRCh37	19	42796505	42796505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	65	934	0	ENST00000575354.2:c.3062C>T	p.Pro1021Leu	p.P1021L	ENST00000575354	NM_015125.3	1021	cCt/cTt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50917081	50917082	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	62	839	0	ENST00000440232.2:c.2333_2334delinsTT	p.Ala778Val	p.A778V	ENST00000440232	NM_002691.3	778	gCC/gTT																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714679	52714679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	82	756	1	ENST00000322088.6:c.437C>T	p.Ser146Leu	p.S146L	ENST00000322088	NM_014225.5	146	tCg/tTg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25991692	25991692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	52	488	0	ENST00000435504.4:c.550C>T	p.Pro184Ser	p.P184S	ENST00000435504		184	Cca/Tca																																																																														
ALK	238	MSKCC	GRCh37	2	29449834	29449835	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	42	979	2	ENST00000389048.3:c.3020_3021delinsAT	p.Phe1007Tyr	p.F1007Y	ENST00000389048	NM_004304.4	1007	tTC/tAT																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47606929	47606929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	37	458	0	ENST00000263735.4:c.679C>T	p.His227Tyr	p.H227Y	ENST00000263735	NM_002354.2	227	Cat/Tat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248423	212248423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	27	350	0	ENST00000342788.4:c.3844C>T	p.Pro1282Ser	p.P1282S	ENST00000342788	NM_005235.2	1282	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710637	40710637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	53	532	0	ENST00000373198.4:c.4214G>A	p.Gly1405Glu	p.G1405E	ENST00000373198	NM_133170.3	1405	gGa/gAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730938	40730938	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	15	450	0	ENST00000373198.4:c.3598-1G>A		p.X1200_splice	ENST00000373198	NM_133170.3	1200																																																																															
PTPRT	11122	MSKCC	GRCh37	20	40770576	40770576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	65	544	2	ENST00000373198.4:c.2806C>T	p.Arg936Ter	p.R936*	ENST00000373198	NM_133170.3	936	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076862	41076862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	17	450	0	ENST00000373198.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000373198	NM_133170.3	520	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076967	41076967	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	41	445	0	ENST00000373198.4:c.1453C>T	p.Pro485Ser	p.P485S	ENST00000373198	NM_133170.3	485	Cca/Tca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306755	41306755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	69	459	0	ENST00000373198.4:c.904G>A	p.Ala302Thr	p.A302T	ENST00000373198	NM_133170.3	302	Gcc/Acc																																																																														
ERG	2078	MSKCC	GRCh37	21	39772529	39772529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	34	537	0	ENST00000288319.7:c.712C>T	p.Pro238Ser	p.P238S	ENST00000288319	NM_182918.3	238	Cct/Tct																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866331	42866331	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	71	677	0	ENST00000398585.3:c.301G>C	p.Val101Leu	p.V101L	ENST00000398585	NM_001135099.1	101	Gtc/Ctc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866385	42866385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	36	688	1	ENST00000398585.3:c.247C>T	p.Pro83Ser	p.P83S	ENST00000398585	NM_001135099.1	83	Ccg/Tcg																																																																														
PPARG	5468	MSKCC	GRCh37	3	12421265	12421265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	30	654	0	ENST00000287820.6:c.145G>A	p.Asp49Asn	p.D49N	ENST00000287820	NM_015869.4	49	Gat/Aat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162039	47162039	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	20	514	0	ENST00000409792.3:c.4087G>C	p.Asp1363His	p.D1363H	ENST00000409792	NM_014159.6	1363	Gac/Cac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162323	47162323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	17	498	0	ENST00000409792.3:c.3803C>T	p.Ser1268Phe	p.S1268F	ENST00000409792	NM_014159.6	1268	tCt/tTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163830	47163830	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	27	540	0	ENST00000409792.3:c.2296A>G	p.Met766Val	p.M766V	ENST00000409792	NM_014159.6	766	Atg/Gtg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164165	47164165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	47	406	0	ENST00000409792.3:c.1961C>A	p.Ser654Tyr	p.S654Y	ENST00000409792	NM_014159.6	654	tCt/tAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164362	47164362	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	33	419	0	ENST00000409792.3:c.1764del	p.Phe588LeufsTer13	p.F588Lfs*13	ENST00000409792	NM_014159.6	588	ttT/tt																																																																														
MST1	4485	MSKCC	GRCh37	3	49724707	49724707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	48	687	0	ENST00000449682.2:c.482C>T	p.Thr161Ile	p.T161I	ENST00000449682	NM_020998.3	161	aCt/aTt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138453544	138453545	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	21	491	1	ENST00000289153.2:c.903_904delinsAA	p.Ala302Thr	p.A302T	ENST00000289153	NM_006219.2	301	gaGGct/gaAAct																																																																														
TP63	8626	MSKCC	GRCh37	3	189590717	189590717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	34	548	0	ENST00000264731.3:c.1282C>T	p.Pro428Ser	p.P428S	ENST00000264731	NM_003722.4	428	Cct/Tct																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807660	1807660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	30	807	0	ENST00000260795.2:c.1829C>T	p.Ser610Phe	p.S610F	ENST00000260795		610	tCc/tTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155278	55155278	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	31	403	0	ENST00000257290.5:c.2877A>T	p.Lys959Asn	p.K959N	ENST00000257290	NM_006206.4	959	aaA/aaT																																																																														
KIT	3815	MSKCC	GRCh37	4	55594013	55594013	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	32	515	0	ENST00000288135.5:c.1799T>A	p.Phe600Tyr	p.F600Y	ENST00000288135	NM_000222.2	600	tTc/tAc																																																																														
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	33	538	3	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
KDR	3791	MSKCC	GRCh37	4	55961077	55961077	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201830601		P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	29	737	0	ENST00000263923.4:c.2863A>G	p.Ile955Val	p.I955V	ENST00000263923	NM_002253.2	955	Atc/Gtc																																																																														
KDR	3791	MSKCC	GRCh37	4	55961812	55961812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	32	480	0	ENST00000263923.4:c.2749G>A	p.Glu917Lys	p.E917K	ENST00000263923	NM_002253.2	917	Gaa/Aaa																																																																														
KDR	3791	MSKCC	GRCh37	4	55972883	55972883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	15	553	0	ENST00000263923.4:c.1507C>T	p.Gln503Ter	p.Q503*	ENST00000263923	NM_002253.2	503	Caa/Taa																																																																														
TET2	54790	MSKCC	GRCh37	4	106157521	106157521	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	22	300	0	ENST00000380013.4:c.2422G>T	p.Glu808Ter	p.E808*	ENST00000380013	NM_001127208.2	808	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332477	153332477	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147025249		P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	26	454	0	ENST00000281708.4:c.479C>T	p.Pro160Leu	p.P160L	ENST00000281708	NM_033632.3	160	cCa/cTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524168	187524168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	25	429	0	ENST00000441802.2:c.11371C>T	p.His3791Tyr	p.H3791Y	ENST00000441802	NM_005245.3	3791	Cac/Tac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628376	187628376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	35	767	0	ENST00000441802.2:c.2606C>T	p.Ser869Leu	p.S869L	ENST00000441802	NM_005245.3	869	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	56	309	0				ENST00000310581	NM_198253.2																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31515325	31515325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	27	575	0	ENST00000344624.3:c.1060C>T	p.Arg354Cys	p.R354C	ENST00000344624		354	Cgc/Tgc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871203	35871203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	27	389	0	ENST00000303115.3:c.425G>A	p.Gly142Glu	p.G142E	ENST00000303115	NM_002185.3	142	gGa/gAa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80063881	80063881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	19	519	0	ENST00000265081.6:c.2026C>T	p.Pro676Ser	p.P676S	ENST00000265081	NM_002439.4	676	Cct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112154801	112154801	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	33	588	0	ENST00000257430.4:c.1072C>T	p.Gln358Ter	p.Q358*	ENST00000257430	NM_000038.5	358	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112177169	112177170	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	13	368	0	ENST00000257430.4:c.5878_5879delinsTT	p.Pro1960Leu	p.P1960L	ENST00000257430	NM_000038.5	1960	CCg/TTg																																																																														
APC	324	MSKCC	GRCh37	5	112178042	112178042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	22	386	0	ENST00000257430.4:c.6751C>T	p.Pro2251Ser	p.P2251S	ENST00000257430	NM_000038.5	2251	Cca/Tca																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149441389	149441389	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	29	664	0	ENST00000286301.3:c.1650G>A	p.Trp550Ter	p.W550*	ENST00000286301	NM_005211.3	550	tgG/tgA																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505103	149505103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	29	635	0	ENST00000261799.4:c.1712C>T	p.Ser571Phe	p.S571F	ENST00000261799	NM_002609.3	571	tCt/tTt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043921	180043921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	51	755	0	ENST00000261937.6:c.3075G>A	p.Met1025Ile	p.M1025I	ENST00000261937	NM_182925.4	1025	atG/atA																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048652	180048652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	39	693	0	ENST00000261937.6:c.1910G>A	p.Ser637Asn	p.S637N	ENST00000261937	NM_182925.4	637	aGc/aAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057783	180057783	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	12	515	0	ENST00000261937.6:c.172G>T	p.Glu58Ter	p.E58*	ENST00000261937	NM_182925.4	58	Gag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673565	30673565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	44	780	0	ENST00000376406.3:c.3395C>T	p.Ser1132Phe	p.S1132F	ENST00000376406	NM_014641.2	1132	tCc/tTc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324867	31324867	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	38	459	0	ENST00000412585.2:c.69G>A	p.Trp23Ter	p.W23*	ENST00000412585	NM_005514.6	23	tgG/tgA																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169973	32169973	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	47	837	0	ENST00000375023.3:c.3635A>G	p.Lys1212Arg	p.K1212R	ENST00000375023	NM_004557.3	1212	aAg/aGg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170150	32170151	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	40	772	1	ENST00000375023.3:c.3457_3458delinsAA	p.Gly1153Lys	p.G1153K	ENST00000375023	NM_004557.3	1153	GGg/AAg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184781	32184781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	33	598	0	ENST00000375023.3:c.1802G>A	p.Gly601Glu	p.G601E	ENST00000375023	NM_004557.3	601	gGa/gAa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190348	32190349	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	38	656	1	ENST00000375023.3:c.390_391delinsAC	p.Gly131Arg	p.G131R	ENST00000375023	NM_004557.3	130	agGGgc/agACgc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32790084	32790084	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	16	227	0	ENST00000374899.4:c.1944G>A	p.Trp648Ter	p.W648*	ENST00000374899	NM_018833.2	648	tgG/tgA																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287355	33287355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	35	571	0	ENST00000374542.5:c.1742C>T	p.Ser581Phe	p.S581F	ENST00000374542	NM_001141970.1	581	tCt/tTt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287982	33287982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	28	509	0	ENST00000374542.5:c.1271C>T	p.Ser424Phe	p.S424F	ENST00000374542	NM_001141970.1	424	tCc/tTc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955105	93955105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	16	467	0	ENST00000369303.4:c.2793G>A	p.Trp931Ter	p.W931*	ENST00000369303	NM_004440.3	931	tgG/tgA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956704	93956704	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	22	320	0	ENST00000369303.4:c.2533-1G>A		p.X845_splice	ENST00000369303	NM_004440.3	845																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553249	106553249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	43	534	0	ENST00000369096.4:c.1214C>T	p.Ser405Leu	p.S405L	ENST00000369096	NM_001198.3	405	tCg/tTg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553360	106553360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	17	457	0	ENST00000369096.4:c.1325G>A	p.Arg442Lys	p.R442K	ENST00000369096	NM_001198.3	442	aGg/aAg																																																																														
FYN	2534	MSKCC	GRCh37	6	112035643	112035643	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	31	398	0	ENST00000368678.4:c.251T>A	p.Val84Glu	p.V84E	ENST00000368678		84	gTg/gAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117645530	117645530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	38	584	0	ENST00000368508.3:c.5606G>A	p.Gly1869Glu	p.G1869E	ENST00000368508	NM_002944.2	1869	gGa/gAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715509	117715509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	16	331	0	ENST00000368508.3:c.980G>A	p.Gly327Glu	p.G327E	ENST00000368508	NM_002944.2	327	gGa/gAa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152415675	152415675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	44	478	0	ENST00000206249.3:c.1525C>T	p.Leu509Phe	p.L509F	ENST00000206249	NM_000125.3	509	Ctc/Ttc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157470057	157470057	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	28	325	1	ENST00000346085.5:c.2851C>T	p.Gln951Ter	p.Q951*	ENST00000346085	NM_020732.3	951	Cag/Tag																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683565	162683565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	30	498	0	ENST00000366898.1:c.404G>A	p.Gly135Glu	p.G135E	ENST00000366898	NM_004562.2	135	gGa/gAa																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683629	162683629	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	38	523	0	ENST00000366898.1:c.340G>T	p.Gly114Ter	p.G114*	ENST00000366898	NM_004562.2	114	Gga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954927	2954927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	139	726	0	ENST00000396946.4:c.2783G>A	p.Gly928Glu	p.G928E	ENST00000396946	NM_032415.4	928	gGg/gAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979559	2979559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	61	460	0	ENST00000396946.4:c.688G>A	p.Asp230Asn	p.D230N	ENST00000396946	NM_032415.4	230	Gat/Aat																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729505	41729505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	52	572	0	ENST00000242208.4:c.1024C>T	p.Pro342Ser	p.P342S	ENST00000242208	NM_002192.2	342	Ccc/Tcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223550	55223550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	53	637	0	ENST00000275493.2:c.917C>T	p.Ser306Leu	p.S306L	ENST00000275493	NM_005228.3	306	tCg/tTg																																																																														
MET	4233	MSKCC	GRCh37	7	116397692	116397692	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	60	562	0	ENST00000397752.3:c.1966G>A	p.Asp656Asn	p.D656N	ENST00000397752	NM_000245.2	656	Gat/Aat																																																																														
MET	4233	MSKCC	GRCh37	7	116436101	116436101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	62	481	2	ENST00000397752.3:c.4096C>T	p.Pro1366Ser	p.P1366S	ENST00000397752	NM_000245.2	1366	Cct/Tct																																																																														
BRAF	673	MSKCC	GRCh37	7	140439617	140439617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	25	671	0	ENST00000288602.6:c.2122C>T	p.Pro708Ser	p.P708S	ENST00000288602	NM_004333.4	708	Ccc/Tcc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873285	151873285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	28	289	0	ENST00000262189.6:c.9253C>T	p.Pro3085Ser	p.P3085S	ENST00000262189	NM_170606.2	3085	Cct/Tct																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956771	68956771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	27	597	1	ENST00000288368.4:c.889C>T	p.Arg297Cys	p.R297C	ENST00000288368	NM_024870.2	297	Cgt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002813	69002813	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	15	254	0	ENST00000288368.4:c.2114-1G>A		p.X705_splice	ENST00000288368	NM_024870.2	705																																																																															
PREX2	80243	MSKCC	GRCh37	8	69011986	69011986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	23	638	0	ENST00000288368.4:c.2623G>A	p.Glu875Lys	p.E875K	ENST00000288368	NM_024870.2	875	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030817	69030817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	37	370	0	ENST00000288368.4:c.3359C>T	p.Ser1120Phe	p.S1120F	ENST00000288368	NM_024870.2	1120	tCc/tTc																																																																														
CD274	29126	MSKCC	GRCh37	9	5457207	5457207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	28	351	0	ENST00000381577.3:c.181G>A	p.Asp61Asn	p.D61N	ENST00000381577	NM_014143.3	61	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341196	8341196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	23	452	0	ENST00000356435.5:c.5020C>T	p.Arg1674Cys	p.R1674C	ENST00000356435		1674	Cgc/Tgc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484342	8484342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	21	481	0	ENST00000356435.5:c.3190G>A	p.Asp1064Asn	p.D1064N	ENST00000356435		1064	Gat/Aat																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528755	8528755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	26	377	0	ENST00000356435.5:c.377C>T	p.Pro126Leu	p.P126L	ENST00000356435		126	cCt/cTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633430	8633430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	23	430	1	ENST00000356435.5:c.239C>T	p.Ser80Leu	p.S80L	ENST00000356435		80	tCa/tTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	36	470	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	36	470	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
SYK	6850	MSKCC	GRCh37	9	93637113	93637113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	21	431	0	ENST00000375746.1:c.1163G>A	p.Gly388Asp	p.G388D	ENST00000375746	NM_001174167.1	388	gGc/gAc																																																																														
FANCC	2176	MSKCC	GRCh37	9	98011548	98011548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	37	432	0	ENST00000289081.3:c.26C>T	p.Ser9Phe	p.S9F	ENST00000289081	NM_000136.2	9	tCt/tTt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209616	98209616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	31	636	0	ENST00000331920.6:c.3922A>G	p.Arg1308Gly	p.R1308G	ENST00000331920	NM_000264.3	1308	Aga/Gga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98240380	98240380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	21	465	0	ENST00000331920.6:c.1304C>T	p.Ser435Phe	p.S435F	ENST00000331920	NM_000264.3	435	tCt/tTt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412689	63412689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	77	355	0	ENST00000330258.3:c.478C>T	p.Pro160Ser	p.P160S	ENST00000330258	NM_152424.3	160	Ccc/Tcc																																																																														
MED12	9968	MSKCC	GRCh37	X	70342969	70342969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	62	280	0	ENST00000374080.3:c.1510G>A	p.Val504Met	p.V504M	ENST00000374080		504	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	130	458	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29528104	29528105	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGATGTGGATCTAATGATTGACTGCCTTGTTT			P-0036810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	65	453	1	ENST00000358273.4:c.1113_1144dup	p.Ser382Ter	p.S382*	ENST00000358273	NM_001042492.2	371	gca/gcAGATGTGGATCTAATGATTGACTGCCTTGTTTa																																																																														
RARA	5914	MSKCC	GRCh37	17	38510569	38510569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	116	452	0	ENST00000254066.5:c.823A>C	p.Thr275Pro	p.T275P	ENST00000254066	NM_000964.3	275	Acg/Ccg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	190	626	0	ENST00000171111.5:c.959G>C	p.Arg320Pro	p.R320P	ENST00000171111	NM_203500.1	320	cGg/cCg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71247453	71247453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	113	522	0	ENST00000318789.4:c.80T>C	p.Leu27Pro	p.L27P	ENST00000318789	NM_032682.5	27	cTa/cCa																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345750	152345750	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	87	249	1	ENST00000359321.1:c.820G>T	p.Glu274Ter	p.E274*	ENST00000359321	NM_005431.1	274	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0036824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	304	699	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	53	268	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0036824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	132	374	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29562746	29562746	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	143	571	1	ENST00000358273.4:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000358273	NM_001042492.2	1276	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	86	504	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	350	909	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																														
MST1R	4486	MSKCC	GRCh37	3	49941021	49941021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	76	419	0	ENST00000296474.3:c.22C>A	p.Pro8Thr	p.P8T	ENST00000296474	NM_002447.2	8	Cct/Act																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	73	521	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579433	7579433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1064793279		P-0036890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	60	626	0	ENST00000269305.4:c.254del	p.Pro85LeufsTer38	p.P85Lfs*38	ENST00000269305	NM_001126112.2	85	cCt/ct																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138198246	138198246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200840068		P-0036890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	75	369	0	ENST00000237289.4:c.839G>A	p.Arg280Gln	p.R280Q	ENST00000237289	NM_001270507.1	280	cGg/cAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574314	95574314	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	43	434	0	ENST00000343455.3:c.2553G>C	p.Gln851His	p.Q851H	ENST00000343455	NM_177438.2	851	caG/caC																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138198240	138198240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	77	361	1	ENST00000237289.4:c.833G>A	p.Arg278Lys	p.R278K	ENST00000237289	NM_001270507.1	278	aGa/aAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412727	63412727	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	14	584	0	ENST00000330258.3:c.440T>C	p.Val147Ala	p.V147A	ENST00000330258	NM_152424.3	147	gTg/gCg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	36	218	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	31	278	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732946	30732946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	21	183	0	ENST00000359013.4:c.1634G>T	p.Cys545Phe	p.C545F	ENST00000359013	NM_001024847.2	545	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	32	402	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	18	399	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	66	332	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	86	320	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554630	63554630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	110	367	0	ENST00000307078.5:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000307078	NM_004655.3	37	Cag/Tag																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589527	69589527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	15	52	0	ENST00000168712.1:c.326C>T	p.Ala109Val	p.A109V	ENST00000168712	NM_002007.2	109	gCg/gTg																																																																														
ERG	2078	MSKCC	GRCh37	21	39755506	39755506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	22	355	0	ENST00000288319.7:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000288319	NM_182918.3	420	tCc/tTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808938	3808938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	138	441	0	ENST00000262367.5:c.3286C>T	p.Pro1096Ser	p.P1096S	ENST00000262367	NM_004380.2	1096	Cca/Tca																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028656	12028656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	85	383	0	ENST00000353533.5:c.859C>T	p.Arg287Cys	p.R287C	ENST00000353533	NM_003010.3	287	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707606	176707606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	115	408	0	ENST00000439151.2:c.5663A>G	p.Asp1888Gly	p.D1888G	ENST00000439151	NM_022455.4	1888	gAc/gGc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722132	176722132	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	41	370	0	ENST00000439151.2:c.7763A>T	p.Gln2588Leu	p.Q2588L	ENST00000439151	NM_022455.4	2588	cAa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	167	307	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16001793	16001793	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	31	289	0	ENST00000268712.3:c.2708C>G	p.Ser903Ter	p.S903*	ENST00000268712	NM_006311.3	903	tCa/tGa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348849	89348849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	56	399	0	ENST00000301030.4:c.4101G>C	p.Lys1367Asn	p.K1367N	ENST00000301030	NM_001256183.1	1367	aaG/aaC																																																																														
KDM5A	5927	MSKCC	GRCh37	12	495101	495101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201821956		P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	34	309	0	ENST00000399788.2:c.205C>T	p.Arg69Cys	p.R69C	ENST00000399788	NM_001042603.1	69	Cgt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29483100	29483100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	124	334	0	ENST00000358273.4:c.160G>T	p.Val54Phe	p.V54F	ENST00000358273	NM_001042492.2	54	Gtt/Ttt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11187803	11187804	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	91	354	0	ENST00000361445.4:c.6093_6094delinsTT	p.Glu2032Ter	p.E2032*	ENST00000361445	NM_004958.3	2031	ctGGaa/ctTTaa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468423	120468423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	95	333	0	ENST00000256646.2:c.4016G>T	p.Gly1339Val	p.G1339V	ENST00000256646	NM_024408.3	1339	gGg/gTg																																																																														
PARP1	142	MSKCC	GRCh37	1	226590028	226590028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	34	359	0	ENST00000366794.5:c.173G>A	p.Trp58Ter	p.W58*	ENST00000366794	NM_001618.3	58	tGg/tAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534803	18534803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	138	264	0	ENST00000266497.5:c.1861G>T	p.Val621Leu	p.V621L	ENST00000266497		621	Gtg/Ttg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32903615	32903615	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	46	372	0	ENST00000380152.3:c.667C>G	p.His223Asp	p.H223D	ENST00000380152		223	Cat/Gat																																																																														
EP300	2033	MSKCC	GRCh37	22	41572824	41572825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	45	370	0	ENST00000263253.7:c.5113dup	p.Met1705AsnfsTer10	p.M1705Nfs*10	ENST00000263253	NM_001429.3	1703	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7577049	7577049	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	209	640	1	ENST00000269305.4:c.889delC	p.His297ThrfsTer48	p.H297Tfs*48	ENST00000269305	NM_001126112.2	297	Cac/ac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120479955	120479955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	100	514	0	ENST00000256646.2:c.3472T>C	p.Cys1158Arg	p.C1158R	ENST00000256646	NM_024408.3	1158	Tgc/Cgc																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248527	8248527	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	76	490	0	ENST00000335790.3:c.360C>G	p.Asn120Lys	p.N120K	ENST00000335790	NM_002315.2	120	aaC/aaG																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89354962	89354962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	88	551	1	ENST00000301030.4:c.718G>T	p.Asp240Tyr	p.D240Y	ENST00000301030	NM_001256183.1	240	Gac/Tac																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257898	19257898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	99	637	0	ENST00000162023.5:c.488C>G	p.Ala163Gly	p.A163G	ENST00000162023		163	gCc/gGc																																																																														
BARD1	580	MSKCC	GRCh37	2	215593540	215593545	+	inframe_deletion	In_Frame_Del	DEL	AGCGCT	AGCGCT	-			P-0036895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	80	345	0	ENST00000260947.4:c.2189_2194del	p.Gln730_Phe732delinsLeu	p.Q730_F732delinsL	ENST00000260947	NM_000465.2	730	cAGCGCTtc/ctc																																																																														
TET2	54790	MSKCC	GRCh37	4	106155184	106155184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	94	329	0	ENST00000380013.4:c.85C>G	p.Pro29Ala	p.P29A	ENST00000380013	NM_001127208.2	29	Cct/Gct																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149447890	149447890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	93	509	0	ENST00000286301.3:c.1514C>A	p.Ala505Asp	p.A505D	ENST00000286301	NM_005211.3	505	gCc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	108	404	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120181	70120182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	68	202	0	ENST00000245479.2:c.1185_1186dup	p.His396ArgfsTer8	p.H396Rfs*8	ENST00000245479	NM_000346.3	395	acg/aCGcg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	33	371	0	ENST00000342988.3:c.1051G>C	p.Asp351His	p.D351H	ENST00000342988	NM_005359.5	351	Gat/Cat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184830	32184830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150609093		P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	33	316	0	ENST00000375023.3:c.1753C>T	p.Arg585Cys	p.R585C	ENST00000375023	NM_004557.3	585	Cgc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114724367	114724368	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	53	307	0	ENST00000543371.1:c.436dup	p.Gln146ProfsTer15	p.Q146Pfs*15	ENST00000543371	NM_001198531.1	145	cac/caCc																																																																														
APC	324	MSKCC	GRCh37	5	112154977	112154977	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	102	389	0	ENST00000257430.4:c.1248C>G	p.Tyr416Ter	p.Y416*	ENST00000257430	NM_000038.5	416	taC/taG																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528648	157528648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	35	363	0	ENST00000346085.5:c.6373C>A	p.Pro2125Thr	p.P2125T	ENST00000346085	NM_020732.3	2125	Cca/Aca																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114724370	114724370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	53	303	0	ENST00000543371.1:c.437A>G	p.Gln146Arg	p.Q146R	ENST00000543371	NM_001198531.1	146	cAg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	268	417	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			102	553	564	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	925	655	0	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc																																																																														
NF2	4771	MSKCC	GRCh37	22	30061031	30061031	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			81	421	460	0	ENST00000338641.4:c.863C>G	p.Ser288Ter	p.S288*	ENST00000338641	NM_000268.3	288	tCa/tGa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141534	11141534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			126	500	580	1	ENST00000344626.4:c.3511G>A	p.Val1171Met	p.V1171M	ENST00000344626	NM_003072.3	1171	Gtg/Atg																																																																														
PAK1	5058	MSKCC	GRCh37	11	77070038	77070038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	205	381	0	ENST00000356341.3:c.502C>T	p.Pro168Ser	p.P168S	ENST00000356341	NM_002576.4	168	Cct/Tct																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973622	15973622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	415	399	0	ENST00000268712.3:c.4370C>T	p.Ser1457Phe	p.S1457F	ENST00000268712	NM_006311.3	1457	tCc/tTc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597494	10597494	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			88	478	436	0	ENST00000171111.5:c.1709G>C	p.Gly570Ala	p.G570A	ENST00000171111	NM_203500.1	570	gGa/gCa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600000	10600000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			174	729	614	0	ENST00000171111.5:c.1576G>C	p.Asp526His	p.D526H	ENST00000171111	NM_203500.1	526	Gat/Cat																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663064	227663064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	238	508	0	ENST00000305123.5:c.391G>A	p.Gly131Ser	p.G131S	ENST00000305123	NM_005544.2	131	Ggt/Agt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589569	67589610	+	inframe_deletion	In_Frame_Del	DEL	TGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGA	TGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGA	-			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			20	138	125	0	ENST00000274335.5:c.1332_1373del	p.Val445_Glu458del	p.V445_E458del	ENST00000274335		444	gcTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAa/gca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518025	8518025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			84	525	466	0	ENST00000356435.5:c.1366A>G	p.Thr456Ala	p.T456A	ENST00000356435		456	Aca/Gca																																																																														
ABL1	25	MSKCC	GRCh37	9	133759875	133759875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			104	808	658	0	ENST00000318560.5:c.2198C>T	p.Ser733Leu	p.S733L	ENST00000318560	NM_005157.4	733	tCa/tTa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11924213	11924213	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			5	20	5	0	ENST00000353533.5:c.10C>G	p.Pro4Ala	p.P4A	ENST00000353533	NM_003010.3	4	Ccg/Gcg																																																																														
CARM1	10498	MSKCC	GRCh37	19	11027124	11027124	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			561	329	697	0	ENST00000327064.4:c.890del	p.Phe297SerfsTer52	p.F297Sfs*52	ENST00000327064	NM_199141.1	297	Ttc/tc																																																																														
IRF4	3662	MSKCC	GRCh37	6	397167	397168	+	missense_variant	Missense_Mutation	DNP	TC	TC	AG			P-0020290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	94	309	0	ENST00000380956.4:c.552_553delinsAG	p.Asp184_Gln185delinsGluGlu	p.D184_Q185delinsEE	ENST00000380956	NM_001195286.1	184	gaTCag/gaAGag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	457	462	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SETD8	387893	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0035898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	10	19	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419061	419061	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	103	369	0	ENST00000399788.2:c.3286C>G	p.Leu1096Val	p.L1096V	ENST00000399788	NM_001042603.1	1096	Cta/Gta																																																																														
FANCA	2175	MSKCC	GRCh37	16	89846290	89846290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	90	352	0	ENST00000389301.3:c.1702G>A	p.Val568Ile	p.V568I	ENST00000389301	NM_000135.2	568	Gtc/Atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	242	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	64	570	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0036612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	78	532	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	76	371	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FH	2271	MSKCC	GRCh37	1	241682980	241682980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	92	336	0	ENST00000366560.3:c.43G>T	p.Val15Leu	p.V15L	ENST00000366560	NM_000143.3	15	Gtg/Ttg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793489	18793489	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	66	248	0	ENST00000266497.5:c.4185+1G>T		p.X1395_splice	ENST00000266497		1395																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156845410	156845410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	150	739	0	ENST00000524377.1:c.1453G>A	p.Gly485Arg	p.G485R	ENST00000524377	NM_002529.3	485	Ggg/Agg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436425	110436425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	193	571	0	ENST00000375856.3:c.1976G>T	p.Gly659Val	p.G659V	ENST00000375856	NM_003749.2	659	gGc/gTc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647549	23647549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	102	567	0	ENST00000261584.4:c.318del	p.Phe107LeufsTer70	p.F107Lfs*70	ENST00000261584	NM_024675.3	106	tcC/tc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602443	10602445	+	frameshift_variant	Frame_Shift_Del	DEL	CGC	CGC	GG			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	155	597	1	ENST00000171111.5:c.1133_1135delinsCC	p.Gly378AlafsTer22	p.G378Afs*22	ENST00000171111	NM_203500.1	378	gGCGgc/gCCgc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123760	11123864	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGCCCTTCCTCATCATCGTGCCTCTCTCGTGAGTACCCGCTGCCAGCAACATCCCACACGCCGCTCACACGCTCCTGTGTTTGTTTCCTAAGTTTGCCGCAGTA	GGGCCCTTCCTCATCATCGTGCCTCTCTCGTGAGTACCCGCTGCCAGCAACATCCCACACGCCGCTCACACGCTCCTGTGTTTGTTTCCTAAGTTTGCCGCAGTA	-			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	55	513	0	ENST00000344626.4:c.2411_2438+77del		p.X804_splice	ENST00000344626	NM_003072.3	804																																																																															
BARD1	580	MSKCC	GRCh37	2	215646111	215646111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	74	511	0	ENST00000260947.4:c.487G>T	p.Val163Leu	p.V163L	ENST00000260947	NM_000465.2	163	Gtg/Ttg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67569241	67569241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	59	432	0	ENST00000274335.5:c.358G>A	p.Glu120Lys	p.E120K	ENST00000274335		120	Gag/Aag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367336	50367336	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	85	304	0	ENST00000331340.3:c.143A>T	p.Lys48Met	p.K48M	ENST00000331340	NM_006060.4	48	aAg/aTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128843259	128843259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	129	641	0	ENST00000249373.3:c.366C>G	p.Ile122Met	p.I122M	ENST00000249373	NM_005631.4	122	atC/atG																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054828	5054828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	56	280	0	ENST00000381652.3:c.880G>T	p.Gly294Cys	p.G294C	ENST00000381652	NM_004972.3	294	Ggt/Tgt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98221976	98221976	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	84	389	0	ENST00000331920.6:c.2793del	p.Val932SerfsTer30	p.V932Sfs*30	ENST00000331920	NM_000264.3	931	ccC/cc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039633	47039644	+	inframe_deletion	In_Frame_Del	DEL	TCCTGCAGGCCC	TCCTGCAGGCCC	-			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	122	586	0	ENST00000329236.7:c.852_863del	p.Ile284_Leu288delinsMet	p.I284_L288delinsM	ENST00000329236	NM_001204466.1	284	aTCCTGCAGGCCCtg/atg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412141	63412141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	128	845	1	ENST00000330258.3:c.1026C>A	p.Asp342Glu	p.D342E	ENST00000330258	NM_152424.3	342	gaC/gaA																																																																														
ATRX	546	MSKCC	GRCh37	X	76949391	76949391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	57	390	0	ENST00000373344.5:c.406G>A	p.Glu136Lys	p.E136K	ENST00000373344	NM_000489.3	136	Gaa/Aaa																																																																														
XIAP	331	MSKCC	GRCh37	X	123020374	123020374	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	33	328	0	ENST00000355640.3:c.862G>T	p.Gly288Ter	p.G288*	ENST00000355640		288	Gga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0036618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	98	600	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228613023	228613023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	28	298	0	ENST00000366696.1:c.4G>T	p.Ala2Ser	p.A2S	ENST00000366696	NM_003493.2	2	Gcc/Tcc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618598	37618605	+	frameshift_variant	Frame_Shift_Del	DEL	GACCGAAG	GACCGAAG	-			P-0036618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	87	424	0	ENST00000447079.4:c.275_282del	p.Asp92GlyfsTer32	p.D92Gfs*32	ENST00000447079	NM_015083.1	92	GACCGAAGg/g																																																																														
ETV1	2115	MSKCC	GRCh37	7	13940451	13940451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	21	320	0	ENST00000405192.2:c.1055G>T	p.Trp352Leu	p.W352L	ENST00000405192	NM_001163147.1	352	tGg/tTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42054415	42054415	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	101	194	0	ENST00000219905.7:c.7601del	p.Gly2534AspfsTer23	p.G2534Dfs*23	ENST00000219905	NM_001164273.1	2533	atG/at																																																																														
KIT	3815	MSKCC	GRCh37	4	55593598	55593660	+	inframe_deletion	In_Frame_Del	DEL	TACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAAC	TACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAAC	-			P-0036620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	110	272	0	ENST00000288135.5:c.1665_1727del	p.Gln556_Leu576del	p.Q556_L576del	ENST00000288135	NM_000222.2	555	gTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACtt/gtt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	40	201	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	41	198	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	36	234	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	58	255	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	68	285	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448601	89448601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	72	387	0	ENST00000336596.2:c.1565G>A	p.Arg522His	p.R522H	ENST00000336596	NM_005233.5	522	cGc/cAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655378	67655378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	82	364	0	ENST00000264010.4:c.1241C>T	p.Ala414Val	p.A414V	ENST00000264010	NM_006565.3	414	gCt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0036643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	98	274	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48018151	48018151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	92	590	0	ENST00000234420.5:c.346G>A	p.Asp116Asn	p.D116N	ENST00000234420	NM_000179.2	116	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9984856	9984856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	54	484	0	ENST00000330684.3:c.1109G>A	p.Arg370Gln	p.R370Q	ENST00000330684	NM_001134407.1	370	cGg/cAg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348083	348083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	108	659	1	ENST00000262320.3:c.1423G>A	p.Val475Ile	p.V475I	ENST00000262320	NM_003502.3	475	Gta/Ata																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912102	114912102	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	58	345	0	ENST00000543371.1:c.1172T>G	p.Leu391Arg	p.L391R	ENST00000543371	NM_001198531.1	391	cTg/cGg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212365	36212365	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	99	666	2	ENST00000222270.7:c.2116C>T	p.Arg706Ter	p.R706*	ENST00000222270	NM_014727.1	706	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	415	664	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	256	860	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	298	556	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	298	556	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	320	603	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	298	556	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584709	48584709	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	113	426	0	ENST00000342988.3:c.788-1G>T		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118377330	118377330	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	100	289	0	ENST00000534358.1:c.10723C>T	p.Gln3575Ter	p.Q3575*	ENST00000534358	NM_005933.3	3575	Caa/Taa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983059	201983060	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	396	785	0	ENST00000359651.3:c.909dup	p.Lys304GlnfsTer167	p.K304Qfs*167	ENST00000359651		303	ttc/ttCc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355131	15355131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	501	854	1	ENST00000263377.2:c.2492C>T	p.Pro831Leu	p.P831L	ENST00000263377	NM_058243.2	831	cCg/cTg																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84390305	84390305	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	338	444	0	ENST00000321945.7:c.477-1G>A		p.X159_splice	ENST00000321945	NM_139076.2	159																																																																															
ATRX	546	MSKCC	GRCh37	X	76938654	76938655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	230	778	1	ENST00000373344.5:c.2093dupA	p.Asp699GlyfsTer2	p.D699Gfs*2	ENST00000373344	NM_000489.3	698	aag/aaAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	14	534	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65300295	65300295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	31	384	0	ENST00000342505.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000342505	NM_002227.2	1139	Cgg/Tgg																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0036675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	10	563	2	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	39	531	0	ENST00000269305.4:c.695T>C	p.Ile232Thr	p.I232T	ENST00000269305	NM_001126112.2	232	aTc/aCc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060751	38060760	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTGCTGCT	TGCTGCTGCT	-			P-0036675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	102	878	0	ENST00000250448.2:c.1229_1238del	p.Glu410ValfsTer27	p.E410Vfs*27	ENST00000250448	NM_004496.3	410	gAGCAGCAGCAt/gt																																																																														
MED12	9968	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	358	406	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	235	718	0	ENST00000269305.4:c.578A>C	p.His193Pro	p.H193P	ENST00000269305	NM_001126112.2	193	cAt/cCt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434795	49434795	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	330	782	0	ENST00000301067.7:c.6758A>G	p.Asp2253Gly	p.D2253G	ENST00000301067	NM_003482.3	2253	gAt/gGt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821152	72821152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	237	563	0	ENST00000268489.5:c.11023C>G	p.Pro3675Ala	p.P3675A	ENST00000268489	NM_006885.3	3675	Ccg/Gcg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553203	106553203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	202	593	0	ENST00000369096.4:c.1168C>A	p.Pro390Thr	p.P390T	ENST00000369096	NM_001198.3	390	Cct/Act																																																																														
APC	324	MSKCC	GRCh37	5	112174742	112174742	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	69	304	0	ENST00000257430.4:c.3451G>T	p.Glu1151Ter	p.E1151*	ENST00000257430	NM_000038.5	1151	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	105	382	1	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	53	567	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	96	320	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	208	644	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65348972	65348972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	130	331	0	ENST00000342505.4:c.193G>T	p.Ala65Ser	p.A65S	ENST00000342505	NM_002227.2	65	Gca/Tca																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243362	46243362	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	99	266	0	ENST00000334344.6:c.1716-1G>T		p.X572_splice	ENST00000334344	NM_152641.2	572																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88670394	88670394	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	102	394	0	ENST00000360948.2:c.1292G>A	p.Gly431Glu	p.G431E	ENST00000360948	NM_001012338.2	431	gGg/gAg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55140778	55140778	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs139219072		P-0036678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	107	587	0	ENST00000257290.5:c.1639G>T	p.Val547Phe	p.V547F	ENST00000257290	NM_006206.4	547	Gtc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	132	489	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578530	7578533	+	frameshift_variant	Frame_Shift_Del	DEL	ACAT	ACAT	-			P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	115	803	0	ENST00000269305.4:c.397_400del	p.Met133PhefsTer36	p.M133Ffs*36	ENST00000269305	NM_001126112.2	133	ATGTtt/tt																																																																														
CBL	867	MSKCC	GRCh37	11	119167680	119167680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	57	530	2	ENST00000264033.4:c.2089G>T	p.Asp697Tyr	p.D697Y	ENST00000264033	NM_005188.3	697	Gac/Tac																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670503	134670503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	39	685	0	ENST00000398015.3:c.414C>G	p.Asp138Glu	p.D138E	ENST00000398015	NM_004441.4	138	gaC/gaG																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045818	143045818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	64	540	0	ENST00000262992.4:c.1816C>A	p.Leu606Ile	p.L606I	ENST00000262992	NM_001101669.1	606	Ctc/Atc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081638	143081638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	51	478	0	ENST00000262992.4:c.1436G>T	p.Gly479Val	p.G479V	ENST00000262992	NM_001101669.1	479	gGa/gTa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527943	157527943	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	47	540	0	ENST00000346085.5:c.5668G>C	p.Glu1890Gln	p.E1890Q	ENST00000346085	NM_020732.3	1890	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	330	712	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	216	481	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	49	233	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	53	393	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541630	187541630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	27	365	0	ENST00000441802.2:c.6110C>T	p.Thr2037Met	p.T2037M	ENST00000441802	NM_005245.3	2037	aCg/aTg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156674	2156674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	225	562	0	ENST00000434045.2:c.248G>A	p.Arg83His	p.R83H	ENST00000434045	NM_001127598.1	83	cGc/cAc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911217	32911217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	66	551	0	ENST00000380152.3:c.2725C>T	p.Leu909Phe	p.L909F	ENST00000380152		909	Ctt/Ttt																																																																														
APC	324	MSKCC	GRCh37	5	112175755	112175759	+	frameshift_variant	Frame_Shift_Del	DEL	ATTAC	ATTAC	GTT			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	109	351	1	ENST00000257430.4:c.4464_4468delinsGTT	p.His1490PhefsTer23	p.H1490Ffs*23	ENST00000257430	NM_000038.5	1488	ttATTACat/ttGTTat																																																																														
ATRX	546	MSKCC	GRCh37	X	76854960	76854960	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	371	703	2	ENST00000373344.5:c.5876A>T	p.Asn1959Ile	p.N1959I	ENST00000373344	NM_000489.3	1959	aAt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	51	775	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
STK11	6794	MSKCC	GRCh37	19	1221309	1221310	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0036684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	28	674	0	ENST00000326873.7:c.834_835delTG	p.Cys278TrpfsTer6	p.C278Wfs*6	ENST00000326873	NM_000455.4	278	TGt/t																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	28	608	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	13	327	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100152	27100152	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	45	614	0	ENST00000324856.7:c.3951delG	p.Met1318CysfsTer163	p.M1318Cfs*163	ENST00000324856	NM_006015.4	1316	tcG/tc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563357	21563357	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185326327		P-0036686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	55	936	2	ENST00000382592.4:c.562G>A	p.Gly188Ser	p.G188S	ENST00000382592	NM_014572.2	188	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0036710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	40	346	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028669	12028669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	52	471	0	ENST00000353533.5:c.872G>T	p.Trp291Leu	p.W291L	ENST00000353533	NM_003010.3	291	tGg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	78	352	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	130	598	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244155	153244156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	45	441	0	ENST00000281708.4:c.2001dup	p.Ser668GlufsTer26	p.S668Efs*26	ENST00000281708	NM_033632.3	667	-/G																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907161	101907161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	55	267	0	ENST00000374994.4:c.1121G>C	p.Gly374Ala	p.G374A	ENST00000374994	NM_004612.2	374	gGa/gCa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822099	72822099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	34	483	0	ENST00000268489.5:c.10076C>T	p.Ser3359Phe	p.S3359F	ENST00000268489	NM_006885.3	3359	tCc/tTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435734	56435734	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	58	466	0	ENST00000407977.2:c.1403C>G	p.Ser468Ter	p.S468*	ENST00000407977		468	tCa/tGa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436137	56436137	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	45	450	0	ENST00000407977.2:c.1000G>T	p.Glu334Ter	p.E334*	ENST00000407977		334	Gaa/Taa																																																																														
BARD1	580	MSKCC	GRCh37	2	215633977	215633977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	41	318	0	ENST00000260947.4:c.1374C>A	p.Asp458Glu	p.D458E	ENST00000260947	NM_000465.2	458	gaC/gaA																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713129	30713129	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	21	243	0	ENST00000359013.4:c.530-1G>A		p.X177_splice	ENST00000359013	NM_001024847.2	177																																																																															
TGFBR2	7048	MSKCC	GRCh37	3	30713408	30713408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	39	410	0	ENST00000359013.4:c.808G>A	p.Glu270Lys	p.E270K	ENST00000359013	NM_001024847.2	270	Gag/Aag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715713	30715713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	44	296	0	ENST00000359013.4:c.1446G>A	p.Met482Ile	p.M482I	ENST00000359013	NM_001024847.2	482	atG/atA																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732961	30732961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	20	284	1	ENST00000359013.4:c.1649C>T	p.Pro550Leu	p.P550L	ENST00000359013	NM_001024847.2	550	cCa/cTa																																																																														
SYK	6850	MSKCC	GRCh37	9	93641147	93641147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	155	506	0	ENST00000375746.1:c.1493G>A	p.Arg498Lys	p.R498K	ENST00000375746	NM_001174167.1	498	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	324	580	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	67	697	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342407	118342407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	15	227	0	ENST00000534358.1:c.533G>A	p.Arg178Lys	p.R178K	ENST00000534358	NM_005933.3	178	aGa/aAa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954622	17954622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	74	858	0	ENST00000458235.1:c.272A>G	p.Glu91Gly	p.E91G	ENST00000458235	NM_000215.3	91	gAg/gGg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438379	110438379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	14	75	0	ENST00000375856.3:c.22G>T	p.Gly8Trp	p.G8W	ENST00000375856	NM_003749.2	8	Ggg/Tgg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39542573	39542573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	70	364	0	ENST00000262039.4:c.377C>A	p.Thr126Lys	p.T126K	ENST00000262039	NM_002647.2	126	aCg/aAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630914	187630915	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0036759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	67	460	0	ENST00000441802.2:c.67_68delinsAT	p.Gly23Ile	p.G23I	ENST00000441802	NM_005245.3	23	GGc/ATc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021785	71021785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs112795301		P-0036763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	188	333	0	ENST00000318789.4:c.1573C>T	p.Arg525Ter	p.R525*	ENST00000318789	NM_032682.5	525	Cga/Tga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137244	64137244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	554	657	0	ENST00000334205.4:c.1676C>T	p.Pro559Leu	p.P559L	ENST00000334205	NM_003942.2	559	cCg/cTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48941675	48941675	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	162	264	0	ENST00000267163.4:c.987del	p.Asp330IlefsTer2	p.D330Ifs*2	ENST00000267163	NM_000321.2	329	Aaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577143	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0036763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	370	541	2	ENST00000269305.4:c.795_796delinsTT	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	265	ctGGga/ctTTga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579709	7579709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	314	513	0	ENST00000269305.4:c.87del	p.Asn29LysfsTer15	p.N29Kfs*15	ENST00000269305	NM_001126112.2	29	aaC/aa																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73774802	73774802	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0036763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	483	719	3	ENST00000254810.4:c.285G>T	p.Glu95Asp	p.E95D	ENST00000254810	NM_005324.3	95	gaG/gaT																																																																														
KIT	3815	MSKCC	GRCh37	4	55589771	55589773	+	inframe_deletion	In_Frame_Del	DEL	ACG	ACG	-			P-0036763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	250	368	0	ENST00000288135.5:c.1255_1257delGAC	p.Asp419del	p.D419del	ENST00000288135	NM_000222.2	418	tACGac/tac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671474	30671474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	441	762	0	ENST00000376406.3:c.5486G>A	p.Arg1829Lys	p.R1829K	ENST00000376406	NM_014641.2	1829	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	248	683	0	ENST00000269305.4:c.949delC	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	317	Cag/ag																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0036769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	38	223	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
APC	324	MSKCC	GRCh37	5	112174872	112174872	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	89	241	0	ENST00000257430.4:c.3581C>A	p.Ser1194Ter	p.S1194*	ENST00000257430	NM_000038.5	1194	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	241	653	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003260	143003260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	99	469	0	ENST00000262992.4:c.2566G>C	p.Glu856Gln	p.E856Q	ENST00000262992	NM_001101669.1	856	Gaa/Caa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	125	516	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	43	804	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	53	618	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
APC	324	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	68	454	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748272	41748272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	179	993	0	ENST00000226382.2:c.497C>T	p.Ala166Val	p.A166V	ENST00000226382	NM_003924.3	166	gCg/gTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	277	955	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	76	788	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	70	560	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	126	550	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	154	782	9	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
ALK	238	MSKCC	GRCh37	2	29451784	29451784	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772809305		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	124	916	0	ENST00000389048.3:c.2781del	p.Cys928AlafsTer11	p.C928Afs*11	ENST00000389048	NM_004304.4	927	ggG/gg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	164	924	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	95	710	3	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456467	99456467	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56248469		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	75	529	1	ENST00000268035.6:c.1784G>A	p.Arg595His	p.R595H	ENST00000268035	NM_000875.3	595	cGt/cAt																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19261529	19261529	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	166	904	1	ENST00000162023.5:c.16del	p.Ile6SerfsTer14	p.I6Sfs*14	ENST00000162023		6	Atc/tc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39937104	39937104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	166	490	0	ENST00000378444.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000378444	NM_001123385.1	27	Gaa/Aaa																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	70	346	1	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245586	41245587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	165	1193	9	ENST00000357654.3:c.1961dup	p.Tyr655ValfsTer18	p.Y655Vfs*18	ENST00000357654	NM_007294.3	654	aag/aaAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	87	885	6	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259729	16259729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	69	628	0	ENST00000375759.3:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000375759	NM_015001.2	2332	Cgc/Tgc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117861247	117861247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	101	670	0	ENST00000297338.2:c.1642G>A	p.Asp548Asn	p.D548N	ENST00000297338	NM_006265.2	548	Gat/Aat																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	147	891	5	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368387	225368388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	73	722	0	ENST00000264414.4:c.1358dupA	p.Asn453LysfsTer5	p.N453Kfs*5	ENST00000264414	NM_003590.4	453	aac/aaAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	168	1060	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	119	922	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112347	115112347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	37	508	1	ENST00000257566.3:c.1393G>A	p.Ala465Thr	p.A465T	ENST00000257566	NM_016569.3	465	Gcc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434959	49434959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	116	676	1	ENST00000301067.7:c.6594del	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2198	ccC/cc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291084	10291084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	162	995	4	ENST00000340748.4:c.387del	p.Lys130AsnfsTer129	p.K130Nfs*129	ENST00000340748		129	ccC/cc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1287	177	1195	4	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	45	782	0	ENST00000305123.5:c.1790_1791dup	p.His598GlyfsTer39	p.H598Gfs*39	ENST00000305123	NM_005544.2	597	-/GG																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849914	156849914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	183	958	2	ENST00000524377.1:c.2170G>A	p.Gly724Ser	p.G724S	ENST00000524377	NM_002529.3	724	Ggc/Agc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527886	157527886	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	112	644	1	ENST00000346085.5:c.5614del	p.Ser1872AlafsTer3	p.S1872Afs*3	ENST00000346085	NM_020732.3	1871	Aaa/aa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162731149	162731149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147483979		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	126	709	1	ENST00000367921.3:c.1004C>T	p.Thr335Met	p.T335M	ENST00000367921	NM_006182.2	335	aCg/aTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41562637	41562637	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	161	637	0	ENST00000263253.7:c.3841C>T	p.Arg1281Ter	p.R1281*	ENST00000263253	NM_001429.3	1281	Cga/Tga																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100727	8100727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	108	832	0	ENST00000346208.3:c.701T>C	p.Phe234Ser	p.F234S	ENST00000346208		234	tTc/tCc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117423	115117423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	181	571	1	ENST00000257566.3:c.751C>T	p.Arg251Trp	p.R251W	ENST00000257566	NM_016569.3	251	Cgg/Tgg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741825	17741825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	104	385	0	ENST00000250003.3:c.496G>A	p.Asp166Asn	p.D166N	ENST00000250003	NM_002478.4	166	Gac/Aac																																																																														
WT1	7490	MSKCC	GRCh37	11	32456619	32456621	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	82	380	0	ENST00000332351.3:c.271_273del	p.Gly91del	p.G91del	ENST00000332351	NM_024426.4	91	GGC/-																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976896	18976896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	57	805	1	ENST00000262803.5:c.3281C>T	p.Ala1094Val	p.A1094V	ENST00000262803	NM_002911.3	1094	gCg/gTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42797191	42797191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	215	1135	2	ENST00000575354.2:c.3553G>A	p.Ala1185Thr	p.A1185T	ENST00000575354	NM_015125.3	1185	Gcc/Acc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639102	3639102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	183	1056	0	ENST00000294008.3:c.4537G>A	p.Val1513Ile	p.V1513I	ENST00000294008	NM_032444.2	1513	Gtt/Att																																																																														
CDC42	998	MSKCC	GRCh37	1	22412941	22412941	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	22	256	0	ENST00000344548.3:c.188A>T	p.Asp63Val	p.D63V	ENST00000344548	NM_001039802.1	63	gAt/gTt																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551550	150551550	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	202	1002	0	ENST00000369026.2:c.457A>G	p.Asn153Asp	p.N153D	ENST00000369026	NM_021960.4	153	Aac/Gac																																																																														
RIT1	6016	MSKCC	GRCh37	1	155870410	155870410	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	78	523	1	ENST00000368323.3:c.430-1G>T		p.X144_splice	ENST00000368323	NM_006912.5	144																																																																															
IKBKE	9641	MSKCC	GRCh37	1	206666684	206666684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	147	907	0	ENST00000367120.3:c.2018G>T	p.Ser673Ile	p.S673I	ENST00000367120	NM_014002.3	673	aGc/aTc																																																																														
TET1	80312	MSKCC	GRCh37	10	70446283	70446284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	102	688	0	ENST00000373644.4:c.5229_5230dup	p.Arg1744LysfsTer19	p.R1744Kfs*19	ENST00000373644	NM_030625.2	1741	-/AA																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137238	64137238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	199	1052	0	ENST00000334205.4:c.1670T>C	p.Leu557Ser	p.L557S	ENST00000334205	NM_003942.2	557	tTg/tCg																																																																														
ATM	472	MSKCC	GRCh37	11	108129797	108129797	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	83	627	0	ENST00000278616.4:c.2461A>G	p.Ser821Gly	p.S821G	ENST00000278616	NM_000051.3	821	Agt/Ggt																																																																														
ATM	472	MSKCC	GRCh37	11	108199814	108199814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	38	381	0	ENST00000278616.4:c.7156G>A	p.Ala2386Thr	p.A2386T	ENST00000278616	NM_000051.3	2386	Gca/Aca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392702	118392702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	108	834	0	ENST00000534358.1:c.11734T>G	p.Cys3912Gly	p.C3912G	ENST00000534358	NM_005933.3	3912	Tgt/Ggt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125076	46125076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	42	366	0	ENST00000334344.6:c.263C>T	p.Ala88Val	p.A88V	ENST00000334344	NM_152641.2	88	gCt/gTt																																																																														
SETD8	387893	MSKCC	GRCh37	12	123892084	123892084	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	133	392	0	ENST00000330479.4:c.893A>T	p.Asn298Ile	p.N298I	ENST00000330479	NM_020382.3	298	aAt/aTt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858133	9858133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	157	1065	1	ENST00000330684.3:c.3268G>A	p.Val1090Met	p.V1090M	ENST00000330684	NM_001134407.1	1090	Gtg/Atg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348059	89348059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	209	1516	3	ENST00000301030.4:c.4891C>T	p.Arg1631Trp	p.R1631W	ENST00000301030	NM_001256183.1	1631	Cgg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29550542	29550542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	40	555	0	ENST00000358273.4:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000358273	NM_001042492.2	601	cGg/cAg																																																																														
EZH1	2145	MSKCC	GRCh37	17	40860057	40860057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	159	924	0	ENST00000428826.2:c.1579C>T	p.Pro527Ser	p.P527S	ENST00000428826		527	Cca/Tca																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119011	70119011	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	150	874	1	ENST00000245479.2:c.583C>T	p.Gln195Ter	p.Q195*	ENST00000245479	NM_000346.3	195	Cag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11169536	11169536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	143	800	3	ENST00000344626.4:c.4606G>A	p.Ala1536Thr	p.A1536T	ENST00000344626	NM_003072.3	1536	Gca/Aca																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948759	17948759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	173	1179	0	ENST00000458235.1:c.1683G>T	p.Lys561Asn	p.K561N	ENST00000458235	NM_000215.3	561	aaG/aaT																																																																														
ERF	2077	MSKCC	GRCh37	19	42753887	42753887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	109	1046	0	ENST00000222329.4:c.377G>A	p.Gly126Asp	p.G126D	ENST00000222329	NM_006494.2	126	gGt/gAt																																																																														
CIC	23152	MSKCC	GRCh37	19	42791254	42791254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	102	876	1	ENST00000575354.2:c.314G>T	p.Ser105Ile	p.S105I	ENST00000575354	NM_015125.3	105	aGc/aTc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912160	50912160	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	156	929	2	ENST00000440232.2:c.1892+2T>C		p.X631_splice	ENST00000440232	NM_002691.3	631																																																																															
ASXL2	55252	MSKCC	GRCh37	2	25966879	25966879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	162	892	0	ENST00000435504.4:c.2327C>A	p.Thr776Asn	p.T776N	ENST00000435504		776	aCc/aAc																																																																														
ALK	238	MSKCC	GRCh37	2	29416399	29416400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	169	1151	0	ENST00000389048.3:c.4553dup	p.Asn1519GlufsTer2	p.N1519Efs*2	ENST00000389048	NM_004304.4	1518	aag/aaAg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266464	198266464	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	62	524	0	ENST00000335508.6:c.2370+2T>C		p.X790_splice	ENST00000335508	NM_012433.2	790																																																																															
CASP8	841	MSKCC	GRCh37	2	202137452	202137452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	84	603	1	ENST00000358485.4:c.680A>T	p.Asn227Ile	p.N227I	ENST00000358485	NM_001080125.1	227	aAc/aTc																																																																														
BARD1	580	MSKCC	GRCh37	2	215609814	215609814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	77	542	0	ENST00000260947.4:c.1880G>A	p.Gly627Glu	p.G627E	ENST00000260947	NM_000465.2	627	gGa/gAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40714369	40714369	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	107	643	1	ENST00000373198.4:c.4028G>A	p.Arg1343Gln	p.R1343Q	ENST00000373198	NM_133170.3	1343	cGg/cAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400095	41400095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	97	692	1	ENST00000373198.4:c.664C>A	p.His222Asn	p.H222N	ENST00000373198	NM_133170.3	222	Cat/Aat																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46267848	46267849	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	137	880	0	ENST00000371998.3:c.2615dup	p.Asn872LysfsTer23	p.N872Kfs*23	ENST00000371998		870	gta/gtAa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52661365	52661365	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs145261114		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	107	542	0	ENST00000394830.3:c.1465A>G	p.Arg489Gly	p.R489G	ENST00000394830	NM_018313.4	489	Agg/Ggg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430506	181430506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	166	914	0	ENST00000325404.1:c.358A>G	p.Met120Val	p.M120V	ENST00000325404	NM_003106.3	120	Atg/Gtg																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186503835	186503835	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	97	709	0	ENST00000323963.5:c.512A>G	p.Tyr171Cys	p.Y171C	ENST00000323963		171	tAc/tGc																																																																														
BCL6	604	MSKCC	GRCh37	3	187447652	187447652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	117	760	1	ENST00000232014.4:c.541G>A	p.Ala181Thr	p.A181T	ENST00000232014	NM_001130845.1	181	Gcc/Acc																																																																														
TP63	8626	MSKCC	GRCh37	3	189607174	189607174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	147	1038	0	ENST00000264731.3:c.1553G>A	p.Gly518Glu	p.G518E	ENST00000264731	NM_003722.4	518	gGa/gAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549491	187549491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	86	648	0	ENST00000441802.2:c.4627C>T	p.Arg1543Cys	p.R1543C	ENST00000441802	NM_005245.3	1543	Cgc/Tgc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149498364	149498364	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	144	963	2	ENST00000261799.4:c.2850del	p.Phe951SerfsTer28	p.F951Sfs*28	ENST00000261799	NM_002609.3	950	ccC/cc																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158400	26158400	+	start_lost	Translation_Start_Site	SNP	G	G	A	rs140899305		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	154	1055	2	ENST00000289316.2:c.3G>A	p.Met1?	p.M1?	ENST00000289316	NM_138720.2	1	atG/atA																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815835	32815835	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs192572056		P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	144	797	4	ENST00000354258.4:c.1781C>T	p.Thr594Met	p.T594M	ENST00000354258	NM_000593.5	594	aCg/aTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528267	157528267	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	164	876	0	ENST00000346085.5:c.5992G>T	p.Glu1998Ter	p.E1998*	ENST00000346085	NM_020732.3	1998	Gag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2969704	2969705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	149	916	0	ENST00000396946.4:c.1574dup	p.His527AlafsTer11	p.H527Afs*11	ENST00000396946	NM_032415.4	525	aag/aaAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845997	151845997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	242	843	0	ENST00000262189.6:c.13015C>T	p.His4339Tyr	p.H4339Y	ENST00000262189	NM_170606.2	4339	Cat/Tat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859731	151859731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	204	592	5	ENST00000262189.6:c.10931C>A	p.Pro3644His	p.P3644H	ENST00000262189	NM_170606.2	3644	cCt/cAt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931783	68931783	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	145	641	0	ENST00000288368.4:c.214-1G>T		p.X72_splice	ENST00000288368	NM_024870.2	72																																																																															
PREX2	80243	MSKCC	GRCh37	8	68989665	68989665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	260	868	0	ENST00000288368.4:c.1603T>C	p.Phe535Leu	p.F535L	ENST00000288368	NM_024870.2	535	Ttt/Ctt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981407	70981407	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	306	1026	1	ENST00000276594.2:c.689delC	p.Pro230GlnfsTer64	p.P230Qfs*64	ENST00000276594	NM_024504.3	230	cCa/ca																																																																														
FANCC	2176	MSKCC	GRCh37	9	97863996	97863996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	110	729	1	ENST00000289081.3:c.1670A>G	p.Gln557Arg	p.Q557R	ENST00000289081	NM_000136.2	557	cAa/cGa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969436	44969436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	101	384	0	ENST00000377967.4:c.4118T>C	p.Val1373Ala	p.V1373A	ENST00000377967	NM_021140.2	1373	gTg/gCg																																																																														
AR	367	MSKCC	GRCh37	X	66765299	66765299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	135	433	0	ENST00000374690.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000374690	NM_000044.3	104	cCc/cTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187534374	187534374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	102	877	0	ENST00000441802.2:c.9352G>A	p.Val3118Met	p.V3118M	ENST00000441802	NM_005245.3	3118	Gtg/Atg																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	247	738	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864648	68864648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	61	244	0	ENST00000288368.4:c.19G>A	p.Gly7Arg	p.G7R	ENST00000288368	NM_024870.2	7	Gga/Aga																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	308	505	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	134	553	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	221	875	0	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	109	294	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647124	2647124	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0036855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	109	482	0	ENST00000342085.4:c.1402G>C	p.Gly468Arg	p.G468R	ENST00000342085	NM_002613.4	468	Ggt/Cgt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	103	393	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
RHOA	387	MSKCC	GRCh37	3	49412969	49412969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	144	753	0	ENST00000418115.1:c.54G>C	p.Lys18Asn	p.K18N	ENST00000418115	NM_001664.2	18	aaG/aaC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445170	49445170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	36	795	0	ENST00000301067.7:c.2296G>A	p.Glu766Lys	p.E766K	ENST00000301067	NM_003482.3	766	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445521	49445521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	30	833	0	ENST00000301067.7:c.1945G>A	p.Glu649Lys	p.E649K	ENST00000301067	NM_003482.3	649	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271978	15271978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	101	699	1	ENST00000263388.2:c.6461G>T	p.Gly2154Val	p.G2154V	ENST00000263388	NM_000435.2	2154	gGa/gTa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933647	49933647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	88	908	0	ENST00000296474.3:c.2630A>G	p.Glu877Gly	p.E877G	ENST00000296474	NM_002447.2	877	gAg/gGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916938	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	81	479	0	ENST00000263967.3:c.323_325del	p.Arg108_Glu109delinsGln	p.R108_E109delinsQ	ENST00000263967	NM_006218.2	108	cGTGaa/caa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151864390	151864390	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	149	595	1	ENST00000262189.6:c.9591T>A	p.Tyr3197Ter	p.Y3197*	ENST00000262189	NM_170606.2	3197	taT/taA																																																																														
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	47	278	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	47	260	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	200	647	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772037	135772037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	203	452	2	ENST00000298552.3:c.3080G>A	p.Arg1027Gln	p.R1027Q	ENST00000298552	NM_001162426.1	1027	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	316	430	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099312	157099312	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	45	306	0	ENST00000346085.5:c.249G>C	p.Gln83His	p.Q83H	ENST00000346085	NM_020732.3	83	caG/caC																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	231	679	0	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560464	95560464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	195	522	0	ENST00000343455.3:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000343455	NM_177438.2	1709	Gat/Aat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	19	406	4	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
BLM	641	MSKCC	GRCh37	15	91347484	91347484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	161	530	2	ENST00000355112.3:c.3651delA	p.Lys1217AsnfsTer62	p.K1217Nfs*62	ENST00000355112	NM_000057.2	1216	Aaa/aa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	69	210	0	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	292	883	4	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	206	763	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466022	69466024	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	254	675	0	ENST00000227507.2:c.862_864delACC	p.Thr288del	p.T288del	ENST00000227507	NM_053056.2	287	cCCAcc/ccc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101181	27101181	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	223	638	0	ENST00000324856.7:c.4463C>G	p.Ser1488Ter	p.S1488*	ENST00000324856	NM_006015.4	1488	tCa/tGa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274749	123274750	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TAT			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	245	602	0	ENST00000358487.5:c.1168_1169insATA	p.Cys390delinsTyrSer	p.C390delinsYS	ENST00000358487	NM_000141.4	390	tgt/tATAgt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505399	125505399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	17	355	0	ENST00000428830.2:c.689C>A	p.Pro230His	p.P230H	ENST00000428830	NM_001114121.2	230	cCt/cAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271630	15271630	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148716935		P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	319	936	0	ENST00000263388.2:c.6809C>T	p.Thr2270Met	p.T2270M	ENST00000263388	NM_000435.2	2270	aCg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229205	36229205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	234	632	0	ENST00000222270.7:c.7895G>A	p.Arg2632His	p.R2632H	ENST00000222270	NM_014727.1	2632	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951933	178951933	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	33	517	0	ENST00000263967.3:c.2988T>A	p.Asn996Lys	p.N996K	ENST00000263967	NM_006218.2	996	aaT/aaA																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182679091	182679091	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs200237071		P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	95	562	0	ENST00000292782.4:c.443T>C	p.Leu148Ser	p.L148S	ENST00000292782	NM_020640.2	148	tTg/tCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539966	187539966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	57	471	0	ENST00000441802.2:c.7774A>G	p.Asn2592Asp	p.N2592D	ENST00000441802	NM_005245.3	2592	Aat/Gat																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591064	67591092	+	protein_altering_variant	In_Frame_Del	DEL	GCAGCTGAGTATCGAGAAATTGACAAACG	GCAGCTGAGTATCGAGAAATTGACAAACG	CT			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	72	271	1	ENST00000274335.5:c.1657_1685delinsCT	p.Ala553_Arg562delinsLeu	p.A553_R562delinsL	ENST00000274335		553	GCAGCTGAGTATCGAGAAATTGACAAACGt/CTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8338930	8338930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	136	495	0	ENST00000356435.5:c.5371G>A	p.Asp1791Asn	p.D1791N	ENST00000356435		1791	Gat/Aat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410036	63410036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	61	639	0	ENST00000330258.3:c.3131T>C	p.Met1044Thr	p.M1044T	ENST00000330258	NM_152424.3	1044	aTg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	305	747	2	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59770870	59770870	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	321	340	0	ENST00000259008.2:c.2496T>G	p.Cys832Trp	p.C832W	ENST00000259008	NM_032043.2	832	tgT/tgG																																																																														
NF2	4771	MSKCC	GRCh37	22	30051595	30051595	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	217	415	0	ENST00000338641.4:c.529T>A	p.Tyr177Asn	p.Y177N	ENST00000338641	NM_000268.3	177	Tat/Aat																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178614	56178614	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	47	337	0	ENST00000399503.3:c.3587C>G	p.Ser1196Ter	p.S1196*	ENST00000399503	NM_005921.1	1196	tCa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	155	483	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BARD1	580	MSKCC	GRCh37	2	215610436	215610449	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATCCTCACCTGT	AAATCCTCACCTGT	-			P-0036874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	60	377	0	ENST00000260947.4:c.1807_1810+10del		p.X603_splice	ENST00000260947	NM_000465.2	603																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	161	494	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	174	766	1	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	98	337	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	59	563	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	31	545	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105586	27105586	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	158	488	0	ENST00000324856.7:c.5197G>T	p.Glu1733Ter	p.E1733*	ENST00000324856	NM_006015.4	1733	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023401	27023401	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	120	445	0	ENST00000324856.7:c.508del	p.His170ThrfsTer62	p.H170Tfs*62	ENST00000324856	NM_006015.4	169	ttC/tt																																																																														
MED12	9968	MSKCC	GRCh37	X	70338671	70338671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	113	556	0	ENST00000374080.3:c.67G>T	p.Asp23Tyr	p.D23Y	ENST00000374080		23	Gat/Tat																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981816	101981827	+	inframe_deletion	In_Frame_Del	DEL	CGTGCCCCAGAC	CGTGCCCCAGAC	-			P-0036904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	86	615	0	ENST00000282441.5:c.244_255del	p.Gln82_Pro85del	p.Q82_P85del	ENST00000282441	NM_001130145.2	79	aaCGTGCCCCAGACc/aac																																																																														
CCND1	595	MSKCC	GRCh37	11	69466025	69466028	+	protein_altering_variant	In_Frame_Del	DEL	CCGA	CCGA	G			P-0036904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	136	698	0	ENST00000227507.2:c.863_866delinsG	p.Thr288_Asp289delinsSer	p.T288_D289delinsS	ENST00000227507	NM_053056.2	288	aCCGAc/aGc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573738	64573738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	31	632	2	ENST00000337652.1:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000337652	NM_130803.2	344	Cag/Tag																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289016	33289016	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	271	685	0	ENST00000374542.5:c.536del	p.Pro179GlnfsTer50	p.P179Qfs*50	ENST00000374542	NM_001141970.1	179	cCa/ca																																																																														
MEN1	4221	MSKCC	GRCh37	11	64574514	64574534	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGGGGTGGGCTCCAGCTCC	CCAGGGGTGGGCTCCAGCTCC	A			P-0036906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	169	695	0	ENST00000337652.1:c.876_896delinsT	p.Glu292AspfsTer23	p.E292Dfs*23	ENST00000337652	NM_130803.2	292	gaGGAGCTGGAGCCCACCCCTGGc/gaTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	8	219	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	70	317	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	86	222	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	73	301	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435907	49435907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	35	333	0	ENST00000301067.7:c.6074A>G	p.Asn2025Ser	p.N2025S	ENST00000301067	NM_003482.3	2025	aAc/aGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247224	153247224	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	43	253	0	ENST00000281708.4:c.1578G>T	p.Trp526Cys	p.W526C	ENST00000281708	NM_033632.3	526	tgG/tgT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718145	117718145	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	24	349	0	ENST00000368508.3:c.712A>C	p.Lys238Gln	p.K238Q	ENST00000368508	NM_002944.2	238	Aaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	27	469	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242483	55242506	+	inframe_deletion	In_Frame_Del	DEL	ATCTCCGAAAGCCAACAAGGAAAT	ATCTCCGAAAGCCAACAAGGAAAT	-			P-0036917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	12	372	0	ENST00000275493.2:c.2253_2276del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	751	acATCTCCGAAAGCCAACAAGGAAATc/acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057911	27057911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	21	461	2	ENST00000324856.7:c.1619C>T	p.Thr540Met	p.T540M	ENST00000324856	NM_006015.4	540	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	382	574	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	166	381	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
PRDM1	639	MSKCC	GRCh37	6	106554919	106554919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	142	440	0	ENST00000369096.4:c.2036G>A	p.Arg679His	p.R679H	ENST00000369096	NM_001198.3	679	cGt/cAt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44921958	44921958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	29	246	0	ENST00000377967.4:c.1492C>A	p.Leu498Met	p.L498M	ENST00000377967	NM_021140.2	498	Ctg/Atg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	11	372	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	78	505	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	84	344	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	85	485	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	67	354	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535309	66535309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	54	382	0	ENST00000273854.3:c.152G>A	p.Arg51Gln	p.R51Q	ENST00000273854	NM_004439.5	51	cGg/cAg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040640	47040640	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	82	490	0	ENST00000329236.7:c.1041G>A	p.Trp347Ter	p.W347*	ENST00000329236	NM_001204466.1	347	tgG/tgA																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479838	67479838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	71	457	2	ENST00000327367.4:c.1145C>T	p.Ala382Val	p.A382V	ENST00000327367	NM_005902.3	382	gCg/gTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273029	55273029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	82	540	1	ENST00000275493.2:c.3352G>A	p.Ala1118Thr	p.A1118T	ENST00000275493	NM_005228.3	1118	Gcg/Acg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717690	89717691	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTACTT			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	51	447	0	ENST00000371953.3:c.718_724dup	p.Glu242ValfsTer3	p.E242Vfs*3	ENST00000371953	NM_000314.4	239	atg/aTGTACTTtg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390719	118390719	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	87	410	0	ENST00000534358.1:c.11369A>C	p.Gln3790Pro	p.Q3790P	ENST00000534358	NM_005933.3	3790	cAg/cCg																																																																														
NF1	4763	MSKCC	GRCh37	17	29663896	29663896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	92	483	0	ENST00000358273.4:c.6391C>T	p.His2131Tyr	p.H2131Y	ENST00000358273	NM_001042492.2	2131	Cac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	53	317	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246227	46246227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	53	305	0	ENST00000334344.6:c.4321C>T	p.Gln1441Ter	p.Q1441*	ENST00000334344	NM_152641.2	1441	Caa/Taa																																																																														
STK11	6794	MSKCC	GRCh37	19	1219349	1219353	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGC	GTGGC	-			P-0036922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	70	310	0	ENST00000326873.7:c.401_405del	p.Cys134TyrfsTer27	p.C134Yfs*27	ENST00000326873	NM_000455.4	134	tGTGGC/t																																																																														
MET	4233	MSKCC	GRCh37	7	116411877	116411899	+	splice_region_variant,intron_variant	Splice_Region	DEL	AGCTCTTTCTTTCTCTCTGTTTT	AGCTCTTTCTTTCTCTCTGTTTT	-			P-0036746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	122	869	0	ENST00000397752.3:c.2888-25_2888-3del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277037	18277037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024686-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	104	476	0	ENST00000222254.8:c.1484G>A	p.Gly495Asp	p.G495D	ENST00000222254	NM_005027.3	495	gGc/gAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435104	56435104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024686-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	118	595	0	ENST00000407977.2:c.2033G>A	p.Cys678Tyr	p.C678Y	ENST00000407977		678	tGc/tAc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821324	32821324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024686-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	296	786	2	ENST00000354258.4:c.270del	p.Ala91ProfsTer32	p.A91Pfs*32	ENST00000354258	NM_000593.5	90	ctC/ct																																																																														
PMS2	5395	MSKCC	GRCh37	7	6027051	6027051	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024686-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	121	545	0	ENST00000265849.7:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000265849	NM_000535.5	449	Cag/Tag																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	195	693	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	54	393	0	ENST00000349496.5:c.98C>A	p.Ser33Tyr	p.S33Y	ENST00000349496	NM_001904.3	33	tCt/tAt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	139	719	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	281	688	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	281	688	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444266	50444266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	14	374	0	ENST00000331340.3:c.196G>A	p.Glu66Lys	p.E66K	ENST00000331340	NM_006060.4	66	Gag/Aag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47707933	47707933	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	30	599	0	ENST00000233146.2:c.2557G>T	p.Glu853Ter	p.E853*	ENST00000233146	NM_000251.2	853	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	281	688	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101492	27101492	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	172	934	0	ENST00000324856.7:c.4777del	p.Arg1593GlyfsTer19	p.R1593Gfs*19	ENST00000324856	NM_006015.4	1592	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101661	27101662	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0028690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	172	1138	0	ENST00000324856.7:c.4948_4949dup	p.Gln1650HisfsTer5	p.Q1650Hfs*5	ENST00000324856	NM_006015.4	1648	gcc/gcCAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052964	180052971	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCTGGC	GGCCTGGC	-			P-0028690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	80	1210	0	ENST00000261937.6:c.1319_1326del	p.Arg440ProfsTer31	p.R440Pfs*31	ENST00000261937	NM_182925.4	440	cGCCAGGCC/c																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034045-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			370	59	441	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034045-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			483	77	458	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																														
APC	324	MSKCC	GRCh37	5	112175977	112175977	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034045-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			156	27	201	0	ENST00000257430.4:c.4687del	p.Leu1563TyrfsTer2	p.L1563Yfs*2	ENST00000257430	NM_000038.5	1562	gaC/ga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0034772-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	13	285	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295801	212295801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	34	573	1	ENST00000342788.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000342788	NM_005235.2	838	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18443936	18443936	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	32	382	0	ENST00000266497.5:c.909T>G	p.Phe303Leu	p.F303L	ENST00000266497		303	ttT/ttG																																																																														
CYLD	1540	MSKCC	GRCh37	16	50783871	50783871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	52	670	0	ENST00000398568.2:c.262G>A	p.Asp88Asn	p.D88N	ENST00000398568	NM_001042412.1	88	Gat/Aat																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191029	2191029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	34	362	0	ENST00000398665.3:c.283C>A	p.Pro95Thr	p.P95T	ENST00000398665	NM_032482.2	95	Ccc/Acc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120363	94120363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	42	333	0	ENST00000369303.4:c.688G>T	p.Val230Phe	p.V230F	ENST00000369303	NM_004440.3	230	Gtt/Ttt																																																																														
MET	4233	MSKCC	GRCh37	7	116411856	116411880	+	intron_variant	Intron	DEL	CCATGATAGCCGTCTTTAACAAGCT	CCATGATAGCCGTCTTTAACAAGCT	-			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	1404	966	0	ENST00000397752.3:c.2888-46_2888-22del		p.*963*	ENST00000397752	NM_000245.2	963																																																																															
PTPRD	5789	MSKCC	GRCh37	9	8465595	8465595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	66	608	0	ENST00000356435.5:c.3585C>A	p.His1195Gln	p.H1195Q	ENST00000356435		1195	caC/caA																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916438	39916438	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	52	629	0	ENST00000378444.4:c.4565A>G	p.Asp1522Gly	p.D1522G	ENST00000378444	NM_001123385.1	1522	gAt/gGt																																																																														
ATRX	546	MSKCC	GRCh37	X	76907659	76907659	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	56	706	0	ENST00000373344.5:c.4502A>T	p.Glu1501Val	p.E1501V	ENST00000373344	NM_000489.3	1501	gAa/gTa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508169	106508169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	18	177	0	ENST00000359195.3:c.163G>A	p.Glu55Lys	p.E55K	ENST00000359195	NM_002649.2	55	Gaa/Aaa																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45649954	45649954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186459476		P-0036507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	27	407	2	ENST00000407780.3:c.881C>T	p.Pro294Leu	p.P294L	ENST00000407780	NM_001283052.1	294	cCg/cTg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266510	198266510	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	39	322	0	ENST00000335508.6:c.2326G>C	p.Glu776Gln	p.E776Q	ENST00000335508	NM_012433.2	776	Gaa/Caa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117601	70117602	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	38	557	0	ENST00000245479.2:c.69_70insT	p.Pro24SerfsTer228	p.P24Sfs*228	ENST00000245479	NM_000346.3	23	-/T																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201777	66201777	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	49	435	0	ENST00000273854.3:c.2725C>T	p.Gln909Ter	p.Q909*	ENST00000273854	NM_004439.5	909	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540238	187540238	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	47	414	0	ENST00000441802.2:c.7502T>G	p.Leu2501Arg	p.L2501R	ENST00000441802	NM_005245.3	2501	cTa/cGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	239	466	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	111	202	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	694	613	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579506	7579506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	349	627	0	ENST00000269305.4:c.181G>C	p.Asp61His	p.D61H	ENST00000269305	NM_001126112.2	61	Gat/Cat																																																																														
PALB2	79728	MSKCC	GRCh37	16	23649272	23649272	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs202194596		P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	192	322	0	ENST00000261584.4:c.110G>A	p.Arg37His	p.R37H	ENST00000261584	NM_024675.3	37	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579503	7579503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	355	630	0	ENST00000269305.4:c.184G>A	p.Glu62Lys	p.E62K	ENST00000269305	NM_001126112.2	62	Gaa/Aaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874710	151874710	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	190	372	0	ENST00000262189.6:c.7828C>T	p.Arg2610Ter	p.R2610*	ENST00000262189	NM_170606.2	2610	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157222519	157222519	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	247	393	0	ENST00000346085.5:c.1786C>T	p.Gln596Ter	p.Q596*	ENST00000346085	NM_020732.3	596	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579882	7579882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	281	520	1	ENST00000269305.4:c.31G>A	p.Glu11Lys	p.E11K	ENST00000269305	NM_001126112.2	11	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425704	49425704	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	275	553	0	ENST00000301067.7:c.12784C>T	p.Gln4262Ter	p.Q4262*	ENST00000301067	NM_003482.3	4262	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427414	49427415	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	295	643	1	ENST00000301067.7:c.11073_11074del	p.Leu3692GlyfsTer20	p.L3692Gfs*20	ENST00000301067	NM_003482.3	3691	tcCCtg/tctg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786701	3786701	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	329	552	0	ENST00000262367.5:c.4510A>T	p.Lys1504Ter	p.K1504*	ENST00000262367	NM_004380.2	1504	Aaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	333	591	0	ENST00000269305.4:c.202G>A	p.Glu68Lys	p.E68K	ENST00000269305	NM_001126112.2	68	Gag/Aag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518162	8518162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	153	386	0	ENST00000356435.5:c.1229C>A	p.Thr410Lys	p.T410K	ENST00000356435		410	aCa/aAa																																																																														
RXRA	6256	MSKCC	GRCh37	9	137320984	137320984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	336	673	2	ENST00000481739.1:c.941C>T	p.Ser314Phe	p.S314F	ENST00000481739	NM_002957.4	314	tCc/tTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76939919	76939924	+	inframe_deletion	In_Frame_Del	DEL	CCAAGT	CCAAGT	-			P-0036510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	280	503	0	ENST00000373344.5:c.824_829del	p.Asp275_Leu276del	p.D275_L276del	ENST00000373344	NM_000489.3	275	gACTTGGtc/gtc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287234	46287234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	26	345	0	ENST00000334344.6:c.5179C>A	p.Pro1727Thr	p.P1727T	ENST00000334344	NM_152641.2	1727	Cct/Act																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061212	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTAGCAGCCGTTCTCGAACAT	GTAGCAGCCGTTCTCGAACAT	-			P-0036511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	29	447	0	ENST00000250448.2:c.757_777delATGTTCGAGAACGGCTGCTAC	p.Met253_Tyr259del	p.M253_Y259del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAACGGCTGCTAC/-																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871865	12871865	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	23	124	0	ENST00000228872.4:c.583del	p.Arg195AspfsTer30	p.R195Dfs*30	ENST00000228872	NM_004064.3	194	agA/ag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25978967	25978967	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	22	335	0	ENST00000435504.4:c.956T>A	p.Leu319Ter	p.L319*	ENST00000435504		319	tTa/tAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922294	178922294	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	18	276	0	ENST00000263967.3:c.1063T>C	p.Tyr355His	p.Y355H	ENST00000263967	NM_006218.2	355	Tat/Cat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	11	352	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	66	500	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313149	30313149	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0036513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	38	543	0	ENST00000262643.3:c.843del	p.Leu282TrpfsTer31	p.L282Wfs*31	ENST00000262643	NM_001238.2	281	ctG/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	314	513	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40491369	40491369	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	199	497	0	ENST00000264657.5:c.431T>C	p.Leu144Pro	p.L144P	ENST00000264657	NM_139276.2	144	cTg/cCg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31380522	31380522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	105	418	0	ENST00000328111.2:c.1012G>A	p.Gly338Arg	p.G338R	ENST00000328111	NM_006892.3	338	Ggg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0036555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	119	452	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2194565	2194565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	30	305	0	ENST00000398665.3:c.640G>T	p.Ala214Ser	p.A214S	ENST00000398665	NM_032482.2	214	Gca/Tca																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197139	26197139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	98	379	0	ENST00000356476.2:c.340C>G	p.His114Asp	p.H114D	ENST00000356476		114	Cac/Gac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	70	423	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	188	576	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087558	27087558	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	126	593	0	ENST00000324856.7:c.2132C>G	p.Ser711Ter	p.S711*	ENST00000324856	NM_006015.4	711	tCa/tGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106771	27106771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	133	484	0	ENST00000324856.7:c.6382C>T	p.Gln2128Ter	p.Q2128*	ENST00000324856	NM_006015.4	2128	Cag/Tag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2124280	2124280	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	166	788	0	ENST00000219476.3:c.2435G>T	p.Ser812Ile	p.S812I	ENST00000219476	NM_000548.3	812	aGc/aTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425776	49425776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	12	480	1	ENST00000301067.7:c.12712C>T	p.Arg4238Cys	p.R4238C	ENST00000301067	NM_003482.3	4238	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428192	49428202	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CTGATCACTCC	CTGATCACTCC	-			P-0036558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	70	574	0	ENST00000301067.7:c.10498_10507+1del		p.X3500_splice	ENST00000301067	NM_003482.3	3500																																																																															
FGFR1	2260	MSKCC	GRCh37	8	38274849	38274849	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779707422		P-0036574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	109	474	0	ENST00000425967.3:c.1731C>A	p.Asn577Lys	p.N577K	ENST00000425967	NM_001174067.1	577	aaC/aaA																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233551	69233551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5364	1147	301	0	ENST00000462284.1:c.1416G>C	p.Lys472Asn	p.K472N	ENST00000462284	NM_002392.5	472	aaG/aaC																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732430	74732441	+	missense_variant	Missense_Mutation	ONP	GTCGACCGAGAT	GTCGACCGAGAT	ATGGTCCAAGTC			P-0036574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	35	305	1	ENST00000359995.5:c.468_479delinsGACTTGGACCAT	p.Ser157_Thr160delinsThrTrpThrIle	p.S157_T160delinsTWTI	ENST00000359995	NM_001195427.1	156	cgATCTCGGTCGACc/cgGACTTGGACCATc																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732418	74732428	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGACTTGGA	CTGGACTTGGA	-			P-0036574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	38	327	0	ENST00000359995.5:c.481_491del	p.Ser161IlefsTer50	p.S161Ifs*50	ENST00000359995	NM_001195427.1	161	TCCAAGTCCAGa/a																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732396	74732414	+	frameshift_variant	Frame_Shift_Del	DEL	GGACTTGGACCTTCGTGCG	GGACTTGGACCTTCGTGCG	-			P-0036574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	39	359	0	ENST00000359995.5:c.495_513del	p.Ala166SerfsTer60	p.A166Sfs*60	ENST00000359995	NM_001195427.1	165	tcCGCACGAAGGTCCAAGTCC/tc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390779	139390779	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	230	872	0	ENST00000277541.6:c.7412C>A	p.Ser2471Ter	p.S2471*	ENST00000277541	NM_017617.3	2471	tCg/tAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399422	139399422	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	279	818	0	ENST00000277541.6:c.4721T>C	p.Leu1574Pro	p.L1574P	ENST00000277541	NM_017617.3	1574	cTg/cCg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139397762	139397762	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	34	633	0	ENST00000277541.6:c.5039T>G	p.Ile1680Ser	p.I1680S	ENST00000277541	NM_017617.3	1680	aTt/aGt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390793	139390793	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	47	859	0	ENST00000277541.6:c.7398delG	p.Ser2467ArgfsTer10	p.S2467Rfs*10	ENST00000277541	NM_017617.3	2466	acG/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	273	490	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
BRD4	23476	MSKCC	GRCh37	19	15355177	15355177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	826	941	2	ENST00000263377.2:c.2446G>A	p.Val816Ile	p.V816I	ENST00000263377	NM_058243.2	816	Gtc/Atc																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774134	56774134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35151472		P-0036582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	270	619	0	ENST00000337432.4:c.485G>A	p.Gly162Glu	p.G162E	ENST00000337432	NM_058216.2	162	gGa/gAa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39278382	39278382	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	43	674	0	ENST00000402219.2:c.767G>C	p.Ser256Thr	p.S256T	ENST00000402219	NM_005633.3	256	aGt/aCt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045758	143045758	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	133	401	0	ENST00000262992.4:c.1876A>G	p.Ile626Val	p.I626V	ENST00000262992	NM_001101669.1	626	Atc/Gtc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30668375	30668375	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	97	470	0	ENST00000376406.3:c.6137T>G	p.Phe2046Cys	p.F2046C	ENST00000376406	NM_014641.2	2046	tTc/tGc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715903	117715903	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0036582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	52	314	0	ENST00000368508.3:c.857-2A>T		p.X286_splice	ENST00000368508	NM_002944.2	286																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151871199	151871238	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGCCACTCCACCTACCTGCTCATCACCATTGGTGGCAT	GCAGCCACTCCACCTACCTGCTCATCACCATTGGTGGCAT	-			P-0036582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	59	412	0	ENST00000262189.6:c.9352_9374+17del		p.X3118_splice	ENST00000262189	NM_170606.2	3118																																																																															
RAD51C	5889	MSKCC	GRCh37	17	56774134	56774134	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	121	619	0	ENST00000337432.4:c.485G>C	p.Gly162Ala	p.G162A	ENST00000337432	NM_058216.2	162	gGa/gCa																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266816	18266816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	136	816	1	ENST00000222254.8:c.127G>A	p.Val43Met	p.V43M	ENST00000222254	NM_005027.3	43	Gtg/Atg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419867	41419867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	164	522	0	ENST00000373198.4:c.454G>A	p.Ala152Thr	p.A152T	ENST00000373198	NM_133170.3	152	Gcc/Acc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46531806	46531806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	105	555	0	ENST00000262741.5:c.541C>G	p.Leu181Val	p.L181V	ENST00000262741	NM_003629.3	181	Ctg/Gtg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323180	31323180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	530	874	0	ENST00000412585.2:c.809C>A	p.Ala270Asp	p.A270D	ENST00000412585	NM_005514.6	270	gCt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	847	775	2	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52598140	52598140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	67	734	0	ENST00000394830.3:c.3726G>T	p.Gln1242His	p.Q1242H	ENST00000394830	NM_018313.4	1242	caG/caT																																																																														
PALB2	79728	MSKCC	GRCh37	16	23614980	23614980	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	71	417	0	ENST00000261584.4:c.3361G>C	p.Gly1121Arg	p.G1121R	ENST00000261584	NM_024675.3	1121	Ggt/Cgt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52598159	52598159	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	68	712	0	ENST00000394830.3:c.3707A>G	p.Tyr1236Cys	p.Y1236C	ENST00000394830	NM_018313.4	1236	tAc/tGc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65301078	65301078	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0036628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	22	303	0	ENST00000342505.4:c.3369+1G>A		p.X1123_splice	ENST00000342505	NM_002227.2	1123																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49424736	49424736	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	65	817	0	ENST00000301067.7:c.13611G>C	p.Lys4537Asn	p.K4537N	ENST00000301067	NM_003482.3	4537	aaG/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	62	821	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BARD1	580	MSKCC	GRCh37	2	215617263	215617263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	30	420	0	ENST00000260947.4:c.1585C>T	p.Arg529Trp	p.R529W	ENST00000260947	NM_000465.2	529	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268205	153268208	+	frameshift_variant	Frame_Shift_Del	DEL	TGGT	TGGT	-			P-0036628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	35	324	0	ENST00000281708.4:c.600_603del	p.Pro201ValfsTer37	p.P201Vfs*37	ENST00000281708	NM_033632.3	200	gtACCA/gt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589153	67589155	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0036628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	28	312	0	ENST00000274335.5:c.1142_1144del	p.Ile381del	p.I381del	ENST00000274335		381	ATC/-																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38277050	38277050	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0036628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	42	645	0	ENST00000425967.3:c.1377+1G>C		p.X459_splice	ENST00000425967	NM_001174067.1	459																																																																															
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	496	868	1	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446166	49446166	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	432	843	0	ENST00000301067.7:c.1300del	p.Leu434Ter	p.L434*	ENST00000301067	NM_003482.3	434	Cta/ta																																																																														
MGA	23269	MSKCC	GRCh37	15	41988577	41988577	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	262	555	1	ENST00000219905.7:c.1369A>G	p.Lys457Glu	p.K457E	ENST00000219905	NM_001164273.1	457	Aaa/Gaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420250	88420250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	332	618	0	ENST00000360948.2:c.2436G>C	p.Gln812His	p.Q812H	ENST00000360948	NM_001012338.2	812	caG/caC																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129638	2129638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	599	1004	1	ENST00000219476.3:c.3365G>T	p.Arg1122Leu	p.R1122L	ENST00000219476	NM_000548.3	1122	cGt/cTt																																																																														
ALK	238	MSKCC	GRCh37	2	29551260	29551260	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	421	765	0	ENST00000389048.3:c.1370T>A	p.Phe457Tyr	p.F457Y	ENST00000389048	NM_004304.4	457	tTc/tAc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99181130	99181130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	428	756	0	ENST00000074304.5:c.2071A>G	p.Ile691Val	p.I691V	ENST00000074304	NM_001134224.1	691	Att/Gtt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376762	31376762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	139	652	0	ENST00000328111.2:c.757C>A	p.Gln253Lys	p.Q253K	ENST00000328111	NM_006892.3	253	Cag/Aag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647535	117647535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	255	722	0	ENST00000368508.3:c.5409G>C	p.Trp1803Cys	p.W1803C	ENST00000368508	NM_002944.2	1803	tgG/tgC																																																																														
ETV1	2115	MSKCC	GRCh37	7	13940428	13940428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	236	507	0	ENST00000405192.2:c.1078G>T	p.Ala360Ser	p.A360S	ENST00000405192	NM_001163147.1	360	Gct/Tct																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508563	106508563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	215	364	0	ENST00000359195.3:c.557C>A	p.Ala186Glu	p.A186E	ENST00000359195	NM_002649.2	186	gCg/gAg																																																																														
MET	4233	MSKCC	GRCh37	7	116371758	116371758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	303	517	0	ENST00000397752.3:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000397752	NM_000245.2	413	Cgt/Tgt																																																																														
SMO	6608	MSKCC	GRCh37	7	128852220	128852220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	554	996	1	ENST00000249373.3:c.2292G>T	p.Gln764His	p.Q764H	ENST00000249373	NM_005631.4	764	caG/caT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139409045	139409045	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	663	1204	0	ENST00000277541.6:c.2124C>G	p.Tyr708Ter	p.Y708*	ENST00000277541	NM_017617.3	708	taC/taG																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1325431	1325431	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	352	645	0	ENST00000381566.1:c.244T>A	p.Ser82Thr	p.S82T	ENST00000381566		82	Tcg/Acg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650837	48650837	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	410	887	0	ENST00000376670.3:c.706G>C	p.Gly236Arg	p.G236R	ENST00000376670	NM_002049.3	236	Ggg/Cgg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410903	63410903	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	437	855	0	ENST00000330258.3:c.2264A>T	p.Glu755Val	p.E755V	ENST00000330258	NM_152424.3	755	gAg/gTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123227930	123227930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	254	618	0	ENST00000218089.9:c.3641C>A	p.Ser1214Tyr	p.S1214Y	ENST00000218089	NM_001042749.1	1214	tCc/tAc																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181402	38181402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	326	528	2	ENST00000396334.3:c.415G>A	p.Glu139Lys	p.E139K	ENST00000396334	NM_002468.4	139	Gag/Aag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258070	123258070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	118	660	0	ENST00000358487.5:c.1611G>A	p.Met537Ile	p.M537I	ENST00000358487	NM_000141.4	537	atG/atA																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271969	18271969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	438	497	1	ENST00000222254.8:c.572C>T	p.Ser191Leu	p.S191L	ENST00000222254	NM_005027.3	191	tCg/tTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412639	139412639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	317	949	1	ENST00000277541.6:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000277541	NM_017617.3	402	tCg/tTg																																																																														
ATRX	546	MSKCC	GRCh37	X	76890145	76890145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	54	655	0	ENST00000373344.5:c.4749G>C	p.Lys1583Asn	p.K1583N	ENST00000373344	NM_000489.3	1583	aaG/aaC																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056533	26056533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	167	287	0	ENST00000343677.2:c.124G>A	p.Glu42Lys	p.E42K	ENST00000343677	NM_005319.3	42	Gag/Aag																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045930	26045930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	244	528	1	ENST00000540144.1:c.292G>A	p.Glu98Lys	p.E98K	ENST00000540144	NM_003531.2	98	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332632	65332632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	68	496	0	ENST00000342505.4:c.907C>T	p.His303Tyr	p.H303Y	ENST00000342505	NM_002227.2	303	Cat/Tat																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858343	59858343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	54	434	0	ENST00000259008.2:c.1652C>T	p.Ala551Val	p.A551V	ENST00000259008	NM_032043.2	551	gCg/gTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52438509	52438509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	507	819	0	ENST00000460680.1:c.1210G>A	p.Asp404Asn	p.D404N	ENST00000460680	NM_004656.3	404	Gac/Aac																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14042169	14042169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	70	352	3	ENST00000311895.7:c.2716G>A	p.Ala906Thr	p.A906T	ENST00000311895	NM_005236.2	906	Gca/Aca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15942786	15942786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	162	698	0	ENST00000268712.3:c.6916G>A	p.Glu2306Lys	p.E2306K	ENST00000268712	NM_006311.3	2306	Gag/Aag																																																																														
AXL	558	MSKCC	GRCh37	19	41758775	41758775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	709	924	1	ENST00000301178.4:c.1829G>C	p.Arg610Pro	p.R610P	ENST00000301178	NM_021913.4	610	cGa/cCa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422561	225422561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	66	228	0	ENST00000264414.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000264414	NM_003590.4	27	Gaa/Aaa																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655198	45655198	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	804	715	1	ENST00000407780.3:c.654G>C	p.Glu218Asp	p.E218D	ENST00000407780	NM_001283052.1	218	gaG/gaC																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656984	45656984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	874	917	1	ENST00000407780.3:c.172G>C	p.Glu58Gln	p.E58Q	ENST00000407780	NM_001283052.1	58	Gag/Cag																																																																														
ATR	545	MSKCC	GRCh37	3	142272139	142272139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	51	530	2	ENST00000350721.4:c.2735G>T	p.Arg912Ile	p.R912I	ENST00000350721	NM_001184.3	912	aGa/aTa																																																																														
ATR	545	MSKCC	GRCh37	3	142272693	142272693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	71	558	0	ENST00000350721.4:c.2506G>A	p.Asp836Asn	p.D836N	ENST00000350721	NM_001184.3	836	Gac/Aac																																																																														
ATR	545	MSKCC	GRCh37	3	142272756	142272756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	68	532	0	ENST00000350721.4:c.2443G>A	p.Asp815Asn	p.D815N	ENST00000350721	NM_001184.3	815	Gat/Aat																																																																														
ATR	545	MSKCC	GRCh37	3	142272812	142272812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	56	410	0	ENST00000350721.4:c.2387G>A	p.Arg796Lys	p.R796K	ENST00000350721	NM_001184.3	796	aGa/aAa																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61197647	61197647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	62	444	0	ENST00000301761.2:c.29C>T	p.Ser10Leu	p.S10L	ENST00000301761	NM_017841.2	10	tCg/tTg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	46	585	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	124	380	1	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976745	2976745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	98	639	0	ENST00000396946.4:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000396946	NM_032415.4	423	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175771	112175771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	38	286	0	ENST00000257430.4:c.4480G>A	p.Glu1494Lys	p.E1494K	ENST00000257430	NM_000038.5	1494	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108153542	108153542	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	143	341	0	ENST00000278616.4:c.3682G>T	p.Glu1228Ter	p.E1228*	ENST00000278616	NM_000051.3	1228	Gaa/Taa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39745032	39745032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	76	381	0	ENST00000361337.2:c.1822C>G	p.Pro608Ala	p.P608A	ENST00000361337	NM_003286.2	608	Ccg/Gcg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169999732	169999732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	75	343	0	ENST00000295797.4:c.1043G>A	p.Arg348Lys	p.R348K	ENST00000295797	NM_002740.5	348	aGa/aAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228235	53228235	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	206	563	0	ENST00000375401.3:c.2167G>T	p.Asp723Tyr	p.D723Y	ENST00000375401	NM_004187.3	723	Gac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112175769	112175770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	38	285	0	ENST00000257430.4:c.4478_4479insA	p.Glu1494GlyfsTer20	p.E1494Gfs*20	ENST00000257430	NM_000038.5	1493	acg/acAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	19	368	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	42	638	1	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044472	47044472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	39	266	0	ENST00000329236.7:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000329236	NM_001204466.1	579	Cgc/Tgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65301158	65301158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	42	193	0	ENST00000342505.4:c.3290G>T	p.Gly1097Val	p.G1097V	ENST00000342505	NM_002227.2	1097	gGc/gTc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65313328	65313328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	93	416	0	ENST00000342505.4:c.1786C>T	p.His596Tyr	p.H596Y	ENST00000342505	NM_002227.2	596	Cac/Tac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098759	47098759	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	67	564	0	ENST00000409792.3:c.6515C>G	p.Pro2172Arg	p.P2172R	ENST00000409792	NM_014159.6	2172	cCc/cGc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	72	253	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	81	288	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624275	89624275	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	141	331	0	ENST00000371953.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000371953	NM_000314.4	17	Caa/Taa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696713	47696713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	31	367	0	ENST00000347630.2:c.235G>A	p.Glu79Lys	p.E79K	ENST00000347630	NM_001007230.1	79	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	103	281	0	ENST00000263967.3:c.1034A>C	p.Asn345Thr	p.N345T	ENST00000263967	NM_006218.2	345	aAt/aCt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264490	16264490	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	103	431	0	ENST00000375759.3:c.10693C>T	p.Arg3565Ter	p.R3565*	ENST00000375759	NM_015001.2	3565	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105586	27105587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	107	422	0	ENST00000324856.7:c.5198dup	p.Tyr1734ValfsTer2	p.Y1734Vfs*2	ENST00000324856	NM_006015.4	1733	gag/gAag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105967	27105967	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	106	405	0	ENST00000324856.7:c.5578G>T	p.Glu1860Ter	p.E1860*	ENST00000324856	NM_006015.4	1860	Gag/Tag																																																																														
CCND1	595	MSKCC	GRCh37	11	69466017	69466017	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	167	579	2	ENST00000227507.2:c.855C>A	p.Cys285Ter	p.C285*	ENST00000227507	NM_053056.2	285	tgC/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	440	497	0	ENST00000269305.4:c.658T>A	p.Tyr220Asn	p.Y220N	ENST00000269305	NM_001126112.2	220	Tat/Aat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922364	178922364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	116	233	0	ENST00000263967.3:c.1133G>A	p.Cys378Tyr	p.C378Y	ENST00000263967	NM_006218.2	378	tGt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578392	7578412	+	inframe_deletion	In_Frame_Del	DEL	CATGGTGGGGGCAGCGCCTCA	CATGGTGGGGGCAGCGCCTCA	-			P-0036752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	187	555	1	ENST00000269305.4:c.518_538del	p.Val173_His179del	p.V173_H179del	ENST00000269305	NM_001126112.2	173	gTGAGGCGCTGCCCCCACCATGag/gag																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0036753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	81	283	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578224	7578224	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0036753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	133	599	0	ENST00000269305.4:c.625A>T	p.Arg209Ter	p.R209*	ENST00000269305	NM_001126112.2	209	Aga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105682	27105682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	80	310	0	ENST00000324856.7:c.5293G>A	p.Glu1765Lys	p.E1765K	ENST00000324856	NM_006015.4	1765	Gaa/Aaa																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206650052	206650052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	34	506	1	ENST00000367120.3:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000367120	NM_014002.3	191	cGa/cAa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457707	67457707	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	130	434	1	ENST00000327367.4:c.517C>T	p.Gln173Ter	p.Q173*	ENST00000327367	NM_005902.3	173	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	62	384	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132542	11132542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	68	607	2	ENST00000344626.4:c.2758G>A	p.Glu920Lys	p.E920K	ENST00000344626	NM_003072.3	920	Gag/Aag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514631	103514631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	41	272	0	ENST00000355739.4:c.1132G>T	p.Val378Leu	p.V378L	ENST00000355739	NM_000123.3	378	Gta/Tta																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560409	95560409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	55	465	0	ENST00000343455.3:c.5180A>G	p.His1727Arg	p.H1727R	ENST00000343455	NM_177438.2	1727	cAc/cGc																																																																														
STK11	6794	MSKCC	GRCh37	19	1222992	1222993	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	76	451	0	ENST00000326873.7:c.929_930del	p.Arg310GlnfsTer7	p.R310Qfs*7	ENST00000326873	NM_000455.4	310	cGG/c																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602292	10602292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	74	621	0	ENST00000171111.5:c.1286G>A	p.Gly429Asp	p.G429D	ENST00000171111	NM_203500.1	429	gGc/gAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412508	63412508	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202069335		P-0036754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	92	308	0	ENST00000330258.3:c.659C>T	p.Thr220Ile	p.T220I	ENST00000330258	NM_152424.3	220	aCc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	132	469	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972412	81972412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	104	381	0	ENST00000359376.3:c.3205G>A	p.Gly1069Ser	p.G1069S	ENST00000359376	NM_002661.3	1069	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175212	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	106	194	0	ENST00000257430.4:c.3924del	p.Glu1309LysfsTer12	p.E1309Kfs*12	ENST00000257430	NM_000038.5	1307	atA/at																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400299	139400299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	162	638	0	ENST00000277541.6:c.4049G>A	p.Arg1350His	p.R1350H	ENST00000277541	NM_017617.3	1350	cGt/cAt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662551	227662551	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	109	506	0	ENST00000305123.5:c.904C>T	p.Arg302Ter	p.R302*	ENST00000305123	NM_005544.2	302	Cga/Tga																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959350	26959350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	91	292	0	ENST00000381527.3:c.517G>A	p.Asp173Asn	p.D173N	ENST00000381527	NM_001260.1	173	Gac/Aac																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554306	63554306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	196	758	0	ENST00000307078.5:c.433G>T	p.Val145Phe	p.V145F	ENST00000307078	NM_004655.3	145	Gtc/Ttc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950048	38950048	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	119	379	0	ENST00000357387.3:c.3902A>T	p.Gln1301Leu	p.Q1301L	ENST00000357387	NM_152756.3	1301	cAg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	257	610	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754873	57754875	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0036779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	173	346	0	ENST00000274289.3:c.315_317del	p.Asn105del	p.N105del	ENST00000274289	NM_006622.3	105	aaCAAa/aaa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70970904	70970904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	268	556	0	ENST00000276594.2:c.1357C>T	p.His453Tyr	p.H453Y	ENST00000276594	NM_024504.3	453	Cat/Tat																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004873	150004873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	226	497	0	ENST00000253339.5:c.1352T>C	p.Ile451Thr	p.I451T	ENST00000253339		451	aTc/aCc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004869	150004872	+	frameshift_variant	Frame_Shift_Del	DEL	AGGG	AGGG	-			P-0036779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	227	494	0	ENST00000253339.5:c.1353_1356del	p.Pro452HisfsTer8	p.P452Hfs*8	ENST00000253339		451	atCCCT/at																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298006	11298006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	227	728	0	ENST00000361445.4:c.2102A>G	p.Asn701Ser	p.N701S	ENST00000361445	NM_004958.3	701	aAt/aGt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374038	118374038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	176	542	0	ENST00000534358.1:c.7431G>A	p.Met2477Ile	p.M2477I	ENST00000534358	NM_005933.3	2477	atG/atA																																																																														
TET2	54790	MSKCC	GRCh37	4	106196276	106196276	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	100	296	0	ENST00000380013.4:c.4609C>T	p.Gln1537Ter	p.Q1537*	ENST00000380013	NM_001127208.2	1537	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	166	355	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	247	412	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28897068	28897068	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs35549791		P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	58	416	0	ENST00000282397.4:c.2812A>G	p.Met938Val	p.M938V	ENST00000282397	NM_002019.4	938	Atg/Gtg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775676	9775676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	269	714	0	ENST00000377346.4:c.219C>G	p.Ile73Met	p.I73M	ENST00000377346	NM_005026.3	73	atC/atG																																																																														
ATRX	546	MSKCC	GRCh37	X	76909631	76909632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	72	591	0	ENST00000373344.5:c.4273dup	p.Arg1425LysfsTer5	p.R1425Kfs*5	ENST00000373344	NM_000489.3	1425	agg/aAgg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231295	46231295	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	361	501	0	ENST00000334344.6:c.1135G>T	p.Gly379Ter	p.G379*	ENST00000334344	NM_152641.2	379	Gga/Tga																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609889	81609889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	248	401	1	ENST00000298171.2:c.1487C>T	p.Thr496Met	p.T496M	ENST00000298171	NM_000369.2	496	aCg/aTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121829	2121829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	111	670	0	ENST00000219476.3:c.1991C>G	p.Ser664Cys	p.S664C	ENST00000219476	NM_000548.3	664	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577604	7577610	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	CCAACCT	CCAACCT	-			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	377	500	0	ENST00000269305.4:c.673-2_677del		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
SRC	6714	MSKCC	GRCh37	20	36022395	36022395	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	83	608	1	ENST00000358208.4:c.448G>A	p.Glu150Lys	p.E150K	ENST00000358208		150	Gag/Aag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89176380	89176380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	58	375	0	ENST00000336596.2:c.110C>A	p.Thr37Lys	p.T37K	ENST00000336596	NM_005233.5	37	aCa/aAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259389	89259389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	219	524	0	ENST00000336596.2:c.533G>T	p.Gly178Val	p.G178V	ENST00000336596	NM_005233.5	178	gGa/gTa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048734	180048734	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	100	772	0	ENST00000261937.6:c.1828T>C	p.Cys610Arg	p.C610R	ENST00000261937	NM_182925.4	610	Tgc/Cgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	36	331	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	47	444	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	86	446	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	55	293	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436553	49436553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	286	731	0	ENST00000301067.7:c.5753G>A	p.Arg1918His	p.R1918H	ENST00000301067	NM_003482.3	1918	cGt/cAt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11264751	11264751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	135	560	0	ENST00000361445.4:c.3811G>A	p.Ala1271Thr	p.A1271T	ENST00000361445	NM_004958.3	1271	Gct/Act																																																																														
RB1	5925	MSKCC	GRCh37	13	48934229	48934229	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	43	420	0	ENST00000267163.4:c.684A>C	p.Lys228Asn	p.K228N	ENST00000267163	NM_000321.2	228	aaA/aaC																																																																														
APC	324	MSKCC	GRCh37	5	112175399	112175399	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	45	280	0	ENST00000257430.4:c.4111del	p.Ser1371ValfsTer44	p.S1371Vfs*44	ENST00000257430	NM_000038.5	1370	Aaa/aa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5044425	5044425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	91	469	0	ENST00000381652.3:c.373T>C	p.Cys125Arg	p.C125R	ENST00000381652	NM_004972.3	125	Tgc/Cgc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900180	101900180	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	44	294	0	ENST00000374994.4:c.614T>G	p.Ile205Ser	p.I205S	ENST00000374994	NM_004612.2	205	aTt/aGt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101911492	101911492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	35	279	0	ENST00000374994.4:c.1417G>A	p.Glu473Lys	p.E473K	ENST00000374994	NM_004612.2	473	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70339251	70339251	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	403	988	0	ENST00000374080.3:c.128A>C	p.Gln43Pro	p.Q43P	ENST00000374080		43	cAa/cCa																																																																														
NF1	4763	MSKCC	GRCh37	17	29654858	29654858	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0022948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	144	329	0	ENST00000358273.4:c.5609+1G>T		p.X1870_splice	ENST00000358273	NM_001042492.2	1870																																																																															
NF1	4763	MSKCC	GRCh37	17	29661898	29661898	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	311	787	0	ENST00000358273.4:c.5855G>A	p.Trp1952Ter	p.W1952*	ENST00000358273	NM_001042492.2	1952	tGg/tAg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349966	15349966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	473	1037	0	ENST00000263377.2:c.3686G>C	p.Arg1229Pro	p.R1229P	ENST00000263377	NM_058243.2	1229	cGc/cCc																																																																														
AKT2	208	MSKCC	GRCh37	19	40741212	40741212	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	386	1156	1	ENST00000392038.2:c.1221G>C	p.Arg407Ser	p.R407S	ENST00000392038	NM_001626.4	407	agG/agC																																																																														
KDR	3791	MSKCC	GRCh37	4	55956155	55956155	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	346	939	0	ENST00000263923.4:c.3160T>A	p.Tyr1054Asn	p.Y1054N	ENST00000263923	NM_002253.2	1054	Tat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033245	69033245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	17	534	0	ENST00000288368.4:c.3685G>A	p.Val1229Ile	p.V1229I	ENST00000288368	NM_024870.2	1229	Gtc/Atc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	53	298	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317461	1317461	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	56	658	1				ENST00000381566																																																																																	
CTLA4	1493	MSKCC	GRCh37	2	204735510	204735510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	56	406	0	ENST00000302823.3:c.311C>T	p.Thr104Met	p.T104M	ENST00000302823	NM_005214.4	104	aCg/aTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968233	134968233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	221	562	0	ENST00000398015.3:c.2746G>A	p.Val916Met	p.V916M	ENST00000398015	NM_004441.4	916	Gtg/Atg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575068	48575068	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	63	367	0	ENST00000342988.3:c.262A>T	p.Lys88Ter	p.K88*	ENST00000342988	NM_005359.5	88	Aaa/Taa																																																																														
HGF	3082	MSKCC	GRCh37	7	81339554	81339554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	44	448	0	ENST00000222390.5:c.1450G>A	p.Val484Ile	p.V484I	ENST00000222390	NM_000601.4	484	Gta/Ata																																																																														
TET1	80312	MSKCC	GRCh37	10	70406637	70406637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	68	595	0	ENST00000373644.4:c.4152del	p.Glu1384AspfsTer17	p.E1384Dfs*17	ENST00000373644	NM_030625.2	1384	gAa/ga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881350	37881350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	101	654	2	ENST00000269571.5:c.2542G>A	p.Ala848Thr	p.A848T	ENST00000269571		848	Gct/Act																																																																														
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	299	422	0	ENST00000311189.7:c.34G>T	p.Gly12Cys	p.G12C	ENST00000311189		12	Ggc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057979	27057979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	180	512	0	ENST00000324856.7:c.1687C>T	p.Gln563Ter	p.Q563*	ENST00000324856	NM_006015.4	563	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	116	343	0	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717607	89717614	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGATCCT	CAGATCCT	-			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	87	298	0	ENST00000371953.3:c.635_642del		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
TP53	7157	MSKCC	GRCh37	17	7577082	7577090	+	inframe_deletion	In_Frame_Del	DEL	CCTCTGTGC	CCTCTGTGC	-			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	178	620	0	ENST00000269305.4:c.848_856del	p.Arg283_Glu286delinsGln	p.R283_E286delinsQ	ENST00000269305	NM_001126112.2	283	cGCACAGAGGaa/caa																																																																														
BARD1	580	MSKCC	GRCh37	2	215645944	215645945	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	103	484	0	ENST00000260947.4:c.653_654delinsCT	p.Trp218Ser	p.W218S	ENST00000260947	NM_000465.2	218	tGG/tCT																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661789	227661789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	160	573	0	ENST00000305123.5:c.1666C>A	p.Pro556Thr	p.P556T	ENST00000305123	NM_005544.2	556	Cct/Act																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671451	30671451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	150	655	0	ENST00000376406.3:c.5509G>C	p.Val1837Leu	p.V1837L	ENST00000376406	NM_014641.2	1837	Gtg/Ctg																																																																														
AR	367	MSKCC	GRCh37	X	66766305	66766305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	57	299	0	ENST00000374690.3:c.1317C>A	p.Phe439Leu	p.F439L	ENST00000374690	NM_000044.3	439	ttC/ttA																																																																														
ATRX	546	MSKCC	GRCh37	X	76855227	76855227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	105	432	0	ENST00000373344.5:c.5760G>T	p.Met1920Ile	p.M1920I	ENST00000373344	NM_000489.3	1920	atG/atT																																																																														
STAG2	10735	MSKCC	GRCh37	X	123227882	123227882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	90	301	0	ENST00000218089.9:c.3593G>C	p.Ser1198Thr	p.S1198T	ENST00000218089	NM_001042749.1	1198	aGc/aCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	122	497	5	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434618	49434618	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	277	696	4	ENST00000301067.7:c.6935C>A	p.Ser2312Ter	p.S2312*	ENST00000301067	NM_003482.3	2312	tCa/tAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434654	49434654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	305	743	3	ENST00000301067.7:c.6899G>T	p.Gly2300Val	p.G2300V	ENST00000301067	NM_003482.3	2300	gGg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444775	49444779	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTC	CTCTC	-			P-0036531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	284	734	5	ENST00000301067.7:c.2687_2691del	p.Gly896AlafsTer5	p.G896Afs*5	ENST00000301067	NM_003482.3	896	gGAGAG/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	105	484	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412303	139412303	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	201	655	0	ENST00000277541.6:c.1342C>T	p.Arg448Ter	p.R448*	ENST00000277541	NM_017617.3	448	Cga/Tga																																																																														
CASP8	841	MSKCC	GRCh37	2	202150039	202150039	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0036535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	161	479	0	ENST00000358485.4:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000358485	NM_001080125.1	494	Cga/Tga																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632477	3632477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	218	738	0	ENST00000294008.3:c.5371C>T	p.Arg1791Cys	p.R1791C	ENST00000294008	NM_032444.2	1791	Cgt/Tgt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120512239	120512239	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	139	479	0	ENST00000256646.2:c.1003T>C	p.Cys335Arg	p.C335R	ENST00000256646	NM_024408.3	335	Tgc/Cgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685275	89685275	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	52	213	0	ENST00000371953.3:c.170T>C	p.Leu57Ser	p.L57S	ENST00000371953	NM_000314.4	57	tTg/tCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448682	49448682	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0036535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	117	362	0	ENST00000301067.7:c.176+1G>A		p.X59_splice	ENST00000301067	NM_003482.3	59																																																																															
NFKBIA	4792	MSKCC	GRCh37	14	35871819	35871820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	182	506	0	ENST00000216797.5:c.686dup	p.Asn229LysfsTer3	p.N229Kfs*3	ENST00000216797	NM_020529.2	229	aat/aaAt																																																																														
MGA	23269	MSKCC	GRCh37	15	41991274	41991274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	111	375	0	ENST00000219905.7:c.2105G>C	p.Arg702Thr	p.R702T	ENST00000219905	NM_001164273.1	702	aGa/aCa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413167	139413167	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	224	737	0	ENST00000277541.6:c.975C>G	p.Asn325Lys	p.N325K	ENST00000277541	NM_017617.3	325	aaC/aaG																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161757	47161757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	44	313	0	ENST00000409792.3:c.4369C>T	p.Pro1457Ser	p.P1457S	ENST00000409792	NM_014159.6	1457	Cca/Tca																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413650	138413650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	107	388	0	ENST00000289153.2:c.1870G>A	p.Val624Ile	p.V624I	ENST00000289153	NM_006219.2	624	Gta/Ata																																																																														
MYC	4609	MSKCC	GRCh37	8	128752961	128752962	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAA			P-0036545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	234	347	0	ENST00000377970.2:c.1124_1125insAAA	p.His374_Asn375insLys	p.H374_N375insK	ENST00000377970	NM_002467.4	374	-/AAA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969321	44969337	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGTGGAGGTTTTTGA	CAGGTGGAGGTTTTTGA	AC			P-0036545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	341	165	1	ENST00000377967.4:c.4006-3_4019delinsAC		p.X1336_splice	ENST00000377967	NM_021140.2	1336																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49421909	49421909	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	138	527	5	ENST00000301067.7:c.14398A>T	p.Met4800Leu	p.M4800L	ENST00000301067	NM_003482.3	4800	Atg/Ttg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	129	434	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	217	703	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	36	227	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
BCL6	604	MSKCC	GRCh37	3	187451406	187451406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	38	402	1	ENST00000232014.4:c.76C>T	p.Arg26Trp	p.R26W	ENST00000232014	NM_001130845.1	26	Cgg/Tgg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729560	41729560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	167	528	0	ENST00000242208.4:c.969G>T	p.Lys323Asn	p.K323N	ENST00000242208	NM_002192.2	323	aaG/aaT																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945097	31945097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	66	550	0	ENST00000340398.3:c.4G>T	p.Ala2Ser	p.A2S	ENST00000340398	NM_001013699.2	2	Gcc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431339	49431339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	49	528	0	ENST00000301067.7:c.9800C>T	p.Ser3267Leu	p.S3267L	ENST00000301067	NM_003482.3	3267	tCa/tTa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28963990	28963990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	54	403	0	ENST00000282397.4:c.1912G>A	p.Ala638Thr	p.A638T	ENST00000282397	NM_002019.4	638	Gcc/Acc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500316	99500316	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	90	623	1	ENST00000268035.6:c.3749A>T	p.Gln1250Leu	p.Q1250L	ENST00000268035	NM_000875.3	1250	cAg/cTg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182174	99182174	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	153	490	0	ENST00000074304.5:c.2239A>T	p.Thr747Ser	p.T747S	ENST00000074304	NM_001134224.1	747	Act/Tct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098786	47098786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	189	650	1	ENST00000409792.3:c.6488C>A	p.Pro2163His	p.P2163H	ENST00000409792	NM_014159.6	2163	cCc/cAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127579	55127579	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	45	238	0	ENST00000257290.5:c.367G>T	p.Asp123Tyr	p.D123Y	ENST00000257290	NM_006206.4	123	Gac/Tac																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230763	66230763	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	55	341	0	ENST00000273854.3:c.2208C>G	p.Ile736Met	p.I736M	ENST00000273854	NM_004439.5	736	atC/atG																																																																														
INPP4B	8821	MSKCC	GRCh37	4	142949992	142949992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	152	523	0	ENST00000262992.4:c.2718G>T	p.Met906Ile	p.M906I	ENST00000262992	NM_001101669.1	906	atG/atT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630275	187630275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	98	559	0	ENST00000441802.2:c.707G>T	p.Gly236Val	p.G236V	ENST00000441802	NM_005245.3	236	gGc/gTc																																																																														
SDHA	6389	MSKCC	GRCh37	5	225630	225630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	140	458	2	ENST00000264932.6:c.409G>T	p.Asp137Tyr	p.D137Y	ENST00000264932	NM_004168.2	137	Gat/Tat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32183043	32183043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	249	665	0	ENST00000375023.3:c.1981C>A	p.Pro661Thr	p.P661T	ENST00000375023	NM_004557.3	661	Cct/Act																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971329	13971329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	111	371	1	ENST00000405192.2:c.600G>T	p.Leu200Phe	p.L200F	ENST00000405192	NM_001163147.1	200	ttG/ttT																																																																														
HGF	3082	MSKCC	GRCh37	7	81334710	81334710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	136	504	0	ENST00000222390.5:c.2006G>C	p.Cys669Ser	p.C669S	ENST00000222390	NM_000601.4	669	tGt/tCt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486232	8486232	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs142397137		P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	51	337	0	ENST00000356435.5:c.2585G>T	p.Arg862Leu	p.R862L	ENST00000356435		862	cGc/cTc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934310	39934310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	175	590	0	ENST00000378444.4:c.289G>T	p.Gly97Cys	p.G97C	ENST00000378444	NM_001123385.1	97	Ggc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	215	474	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	771	686	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741757	17741757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	195	562	1	ENST00000250003.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000250003	NM_002478.4	143	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175754	112175755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	98	354	0	ENST00000257430.4:c.4464dup	p.Leu1489IlefsTer25	p.L1489Ifs*25	ENST00000257430	NM_000038.5	1488	tta/ttAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32921012	32921031	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CGATTACCTGTGTACCCTTT	CGATTACCTGTGTACCCTTT	-			P-0036572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	95	430	0	ENST00000380152.3:c.6988_7007del	p.Ile2330HisfsTer3	p.I2330Hfs*3	ENST00000380152		2329	cCGATTACCTGTGTACCCTTT/c																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103518083	103518083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	63	264	0	ENST00000355739.4:c.2021C>G	p.Ser674Cys	p.S674C	ENST00000355739	NM_000123.3	674	tCc/tGc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40469203	40469220	+	inframe_deletion	In_Frame_Del	DEL	GTCACACAGATAAACTTG	GTCACACAGATAAACTTG	-			P-0036572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	185	271	0	ENST00000264657.5:c.2124_2141del	p.Lys709_Thr714del	p.K709_T714del	ENST00000264657	NM_139276.2	708	acCAAGTTTATCTGTGTGACa/aca																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468390	89468390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	92	212	0	ENST00000336596.2:c.1924C>A	p.Leu642Ile	p.L642I	ENST00000336596	NM_005233.5	642	Ctt/Att																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066525	94066525	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	172	346	0	ENST00000369303.4:c.1234A>C	p.Thr412Pro	p.T412P	ENST00000369303	NM_004440.3	412	Act/Cct																																																																														
PGR	5241	MSKCC	GRCh37	11	100998264	100998264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	58	244	0	ENST00000325455.5:c.1538C>A	p.Pro513His	p.P513H	ENST00000325455	NM_001202474.3	513	cCt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152027728	152027728	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	237	735	0	ENST00000262189.6:c.347C>A	p.Ser116Ter	p.S116*	ENST00000262189	NM_170606.2	116	tCg/tAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	220	573	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	114	669	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0036591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	261	946	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47127726	47127726	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	66	550	1	ENST00000409792.3:c.5356C>G	p.Leu1786Val	p.L1786V	ENST00000409792	NM_014159.6	1786	Cta/Gta																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	15	931	0	ENST00000267101.3:c.310G>C	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ctg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	10	797	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16097870	16097870	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs76145228		P-0036592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	20	302	1	ENST00000268712.3:c.14G>T	p.Gly5Val	p.G5V	ENST00000268712	NM_006311.3	5	gGt/gTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	11	297	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	231	532	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619219	37619241	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGATCTGTCAGTCCCTATAG	CAGAGATCTGTCAGTCCCTATAG	-			P-0036594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	152	460	0	ENST00000447079.4:c.898_920del	p.Arg300GlufsTer43	p.R300Efs*43	ENST00000447079	NM_015083.1	299	CAGAGATCTGTCAGTCCCTATAGc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	93	693	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	48	787	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367348	50367348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	23	362	0	ENST00000331340.3:c.155T>G	p.Val52Gly	p.V52G	ENST00000331340	NM_006060.4	52	gTc/gGc																																																																														
APC	324	MSKCC	GRCh37	5	112175378	112175378	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	75	238	0	ENST00000257430.4:c.4087A>T	p.Lys1363Ter	p.K1363*	ENST00000257430	NM_000038.5	1363	Aaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112174793	112174793	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	80	229	0	ENST00000257430.4:c.3502G>T	p.Glu1168Ter	p.E1168*	ENST00000257430	NM_000038.5	1168	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087448	27087448	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	520	641	5	ENST00000324856.7:c.2022del	p.Ser674ArgfsTer68	p.S674Rfs*68	ENST00000324856	NM_006015.4	674	agT/ag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857323	9857323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	124	397	1	ENST00000330684.3:c.4078G>T	p.Asp1360Tyr	p.D1360Y	ENST00000330684	NM_001134407.1	1360	Gac/Tac																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118922	70118922	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	236	611	0	ENST00000245479.2:c.494A>G	p.His165Arg	p.H165R	ENST00000245479	NM_000346.3	165	cAc/cGc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119798	70119799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	215	522	2	ENST00000245479.2:c.801dup	p.Ile268TyrfsTer28	p.I268Yfs*28	ENST00000245479	NM_000346.3	267	cct/ccTt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908830	101908841	+	inframe_deletion	In_Frame_Del	DEL	TGCTGACATCTA	TGCTGACATCTA	-			P-0036598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	203	570	5	ENST00000374994.4:c.1197_1208del	p.Asp400_Ala403del	p.D400_A403del	ENST00000374994	NM_004612.2	398	cgTGCTGACATCTAt/cgt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47058736	47058737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	66	475	0	ENST00000409792.3:c.7541dupA	p.His2514GlnfsTer6	p.H2514Qfs*6	ENST00000409792	NM_014159.6	2514	cac/caAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378590	25378590	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	187	734	0	ENST00000256078.4:c.408T>G	p.Ser136Arg	p.S136R	ENST00000256078	NM_033360.2	136	agT/agG																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620510	52620510	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	95	621	0	ENST00000394830.3:c.3243del	p.Gly1082ValfsTer52	p.G1082Vfs*52	ENST00000394830	NM_018313.4	1081	aaA/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	74	529	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425385	49425386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	50	846	0	ENST00000301067.7:c.13102dupA	p.Thr4368AsnfsTer4	p.T4368Nfs*4	ENST00000301067	NM_003482.3	4368	acc/aAcc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346341	73346341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	29	490	0	ENST00000377767.4:c.1459G>C	p.Asp487His	p.D487H	ENST00000377767	NM_014953.3	487	Gac/Cac																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680758	88680758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	104	552	0	ENST00000360948.2:c.499G>C	p.Asp167His	p.D167H	ENST00000360948	NM_001012338.2	167	Gac/Cac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216194	36216194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	187	592	0	ENST00000222270.7:c.3602C>T	p.Pro1201Leu	p.P1201L	ENST00000222270	NM_014727.1	1201	cCg/cTg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158626952	158626952	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	143	454	1	ENST00000263640.3:c.718C>G	p.Arg240Gly	p.R240G	ENST00000263640	NM_001105.4	240	Cgt/Ggt																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87325661	87325661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	170	438	0	ENST00000277120.3:c.538A>G	p.Ser180Gly	p.S180G	ENST00000277120		180	Agc/Ggc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	112	513	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591145	67591145	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	90	281	0	ENST00000274335.5:c.1738T>A	p.Tyr580Asn	p.Y580N	ENST00000274335		580	Tac/Aac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299832	15299832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	144	694	2	ENST00000263388.2:c.1346G>A	p.Arg449His	p.R449H	ENST00000263388	NM_000435.2	449	cGc/cAc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	96	719	0	ENST00000397062.3:c.246A>T	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaT																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	167	745	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	102	808	0	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720712	89720712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	49	130	0	ENST00000371953.3:c.867del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	288	gAa/ga																																																																														
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	146	647	1	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	37	347	2	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	63	658	0	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70412277	70412277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	98	246	0	ENST00000373644.4:c.4387G>A	p.Ala1463Thr	p.A1463T	ENST00000373644	NM_030625.2	1463	Gca/Aca																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877407	28877407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	82	420	1	ENST00000282397.4:c.3914G>A	p.Arg1305His	p.R1305H	ENST00000282397	NM_002019.4	1305	cGc/cAc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246021942	246021942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	139	680	1	ENST00000388985.4:c.932C>T	p.Ala311Val	p.A311V	ENST00000388985		311	gCa/gTa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	265	795	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	113	560	2	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	139	411	2	ENST00000274335.5:c.1746-2A>G		p.X582_splice	ENST00000274335		582																																																																															
CTCF	10664	MSKCC	GRCh37	16	67644874	67644874	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	91	471	0	ENST00000264010.4:c.143del	p.Gly48ValfsTer14	p.G48Vfs*14	ENST00000264010	NM_006565.3	47	Ggg/gg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419987	41419987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	132	468	0	ENST00000373198.4:c.334C>T	p.Arg112Cys	p.R112C	ENST00000373198	NM_133170.3	112	Cgt/Tgt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272238	15272238	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	37	607	0	ENST00000263388.2:c.6201del	p.Lys2069ArgfsTer16	p.K2069Rfs*16	ENST00000263388	NM_000435.2	2067	ccC/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099312	157099313	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	43	284	0	ENST00000346085.5:c.264_266dup	p.His89dup	p.H89dup	ENST00000346085	NM_020732.3	89	-/CAC																																																																														
MLH1	4292	MSKCC	GRCh37	3	37090446	37090446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	115	417	0	ENST00000231790.2:c.2041G>A	p.Ala681Thr	p.A681T	ENST00000231790	NM_000249.3	681	Gct/Act																																																																														
MTOR	2475	MSKCC	GRCh37	1	11206767	11206767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	42	523	1	ENST00000361445.4:c.4652C>T	p.Ala1551Val	p.A1551V	ENST00000361445	NM_004958.3	1551	gCa/gTa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400766	72400767	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	92	296	0	ENST00000357731.5:c.404_405del	p.Val135AlafsTer5	p.V135Afs*5	ENST00000357731	NM_173808.2	135	gTG/g																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653815	89653815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	140	463	0	ENST00000371953.3:c.113C>G	p.Pro38Arg	p.P38R	ENST00000371953	NM_000314.4	38	cCt/cGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779301	3779301	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	110	518	0	ENST00000262367.5:c.5747T>C	p.Met1916Thr	p.M1916T	ENST00000262367	NM_004380.2	1916	aTg/aCg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825480	50825480	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	105	391	0	ENST00000398568.2:c.2114del	p.Lys705ArgfsTer27	p.K705Rfs*27	ENST00000398568	NM_001042412.1	704	cAa/ca																																																																														
CIC	23152	MSKCC	GRCh37	19	42791339	42791339	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	113	599	1	ENST00000575354.2:c.404del	p.Pro135GlnfsTer70	p.P135Qfs*70	ENST00000575354	NM_015125.3	133	ggC/gg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919963	50919963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	109	666	0	ENST00000440232.2:c.3050C>A	p.Thr1017Lys	p.T1017K	ENST00000440232	NM_002691.3	1017	aCa/aAa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607756	46607756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	167	687	2	ENST00000263734.3:c.1945C>T	p.Pro649Ser	p.P649S	ENST00000263734	NM_001430.4	649	Ccc/Tcc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182662954	182662954	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	28	381	0	ENST00000292782.4:c.708G>A	p.Trp236Ter	p.W236*	ENST00000292782	NM_020640.2	236	tgG/tgA																																																																														
TET2	54790	MSKCC	GRCh37	4	106197560	106197560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	98	364	0	ENST00000380013.4:c.5893C>A	p.Leu1965Met	p.L1965M	ENST00000380013	NM_001127208.2	1965	Ctg/Atg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052878	180052878	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	49	704	0	ENST00000261937.6:c.1412A>G	p.Gln471Arg	p.Q471R	ENST00000261937	NM_182925.4	471	cAg/cGg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169852	32169852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	46	602	0	ENST00000375023.3:c.3755+1G>A		p.X1252_splice	ENST00000375023	NM_004557.3	1252																																																																															
NOTCH4	4855	MSKCC	GRCh37	6	32171979	32171979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	118	475	0	ENST00000375023.3:c.3053C>T	p.Thr1018Ile	p.T1018I	ENST00000375023	NM_004557.3	1018	aCa/aTa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106553507	106553507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	28	349	0	ENST00000369096.4:c.1472C>T	p.Ala491Val	p.A491V	ENST00000369096	NM_001198.3	491	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	204	587	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	160	439	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25457288	25457288	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0036665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	118	404	1	ENST00000264709.3:c.2599G>T	p.Val867Leu	p.V867L	ENST00000264709	NM_175629.2	867	Gta/Tta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	34	693	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	43	405	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	63	569	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	60	682	0	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117614	70117614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	122	623	0	ENST00000245479.2:c.82G>T	p.Glu28Ter	p.E28*	ENST00000245479	NM_000346.3	28	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577497	7577497	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	59	649	0	ENST00000269305.4:c.782+2T>G		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134911573	134911573	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	64	574	0	ENST00000398015.3:c.2038A>G	p.Ile680Val	p.I680V	ENST00000398015	NM_004441.4	680	Atc/Gtc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0036669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	428	384	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAX	4149	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	308	483	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
TET1	80312	MSKCC	GRCh37	10	70333123	70333123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	393	711	0	ENST00000373644.4:c.1028C>G	p.Pro343Arg	p.P343R	ENST00000373644	NM_030625.2	343	cCa/cGa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608503	28608503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	342	556	0	ENST00000241453.7:c.1639A>G	p.Thr547Ala	p.T547A	ENST00000241453	NM_004119.2	547	Aca/Gca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16042341	16042341	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0036669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	255	476	0	ENST00000268712.3:c.1333A>T	p.Lys445Ter	p.K445*	ENST00000268712	NM_006311.3	445	Aag/Tag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417487	139417487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	441	729	0	ENST00000277541.6:c.557C>A	p.Pro186His	p.P186H	ENST00000277541	NM_017617.3	186	cCc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	123	552	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	118	625	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857047	9857047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	58	404	0	ENST00000330684.3:c.4354C>T	p.Arg1452Cys	p.R1452C	ENST00000330684	NM_001134407.1	1452	Cgc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	90	519	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248339	59248351	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGCCGCCGACG	TGCGCCGCCGACG	-			P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	30	174	0	ENST00000371222.2:c.392_404del	p.Thr131SerfsTer13	p.T131Sfs*13	ENST00000371222	NM_002228.3	131	aCGTCGGCGGCGCAg/ag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285676	46285676	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	57	491	0	ENST00000334344.6:c.5037del	p.Ser1681LeufsTer20	p.S1681Lfs*20	ENST00000334344	NM_152641.2	1679	cGg/cg																																																																														
APC	324	MSKCC	GRCh37	5	112174831	112174831	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	90	330	0	ENST00000257430.4:c.3542del	p.Leu1181Ter	p.L1181*	ENST00000257430	NM_000038.5	1180	agT/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	68	716	0	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860035	151860035	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	23	429	0	ENST00000262189.6:c.10627A>C	p.Ser3543Arg	p.S3543R	ENST00000262189	NM_170606.2	3543	Agc/Cgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711927	89711928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	325	500	0	ENST00000371953.3:c.548dup	p.Asn184GlufsTer6	p.N184Efs*6	ENST00000371953	NM_000314.4	182	tta/ttAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210058	55210058	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	187	630	0	ENST00000275493.2:c.168T>G	p.Asn56Lys	p.N56K	ENST00000275493	NM_005228.3	56	aaT/aaG																																																																														
SPEN	23013	MSKCC	GRCh37	1	16245933	16245933	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	254	411	0	ENST00000375759.3:c.1556T>A	p.Val519Glu	p.V519E	ENST00000375759	NM_015001.2	519	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	76	428	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70341238	70341238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	122	280	0	ENST00000374080.3:c.797G>A	p.Arg266His	p.R266H	ENST00000374080		266	cGc/cAc																																																																														
MYC	4609	MSKCC	GRCh37	8	128748867	128748867	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0036296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	78	407	0	ENST00000377970.2:c.28C>G	p.Gln10Glu	p.Q10E	ENST00000377970	NM_002467.4	10	Cag/Gag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523540	106523540	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs111306935		P-0036296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	74	293	0	ENST00000359195.3:c.2692A>G	p.Asn898Asp	p.N898D	ENST00000359195	NM_002649.2	898	Aac/Gac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431328	49431328	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	74	449	1	ENST00000301067.7:c.9811C>T	p.Gln3271Ter	p.Q3271*	ENST00000301067	NM_003482.3	3271	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420774	49420774	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	126	531	0	ENST00000301067.7:c.14975del	p.Leu4992ArgfsTer3	p.L4992Rfs*3	ENST00000301067	NM_003482.3	4992	cTg/cg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0036298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	78	401	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	29	294	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094443	27094453	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTATCGCCT	CTCTATCGCCT	-			P-0036298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	76	577	0	ENST00000324856.7:c.3153_3163del	p.Tyr1052CysfsTer49	p.Y1052Cfs*49	ENST00000324856	NM_006015.4	1051	CTCTATCGCCTc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	14	513	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	13	876	0	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0036299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	15	604	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	78	276	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	146	624	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437565	56437566	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	151	502	0	ENST00000407977.2:c.896_897delTG	p.Val299GlyfsTer143	p.V299Gfs*143	ENST00000407977		299	gTG/g																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	93	355	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950066	44950066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	125	262	0	ENST00000377967.4:c.3835C>T	p.Arg1279Ter	p.R1279*	ENST00000377967	NM_021140.2	1279	Cga/Tga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	83	445	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	323	643	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	14	42	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																														
TP63	8626	MSKCC	GRCh37	3	189612175	189612175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	109	482	1	ENST00000264731.3:c.1927C>T	p.Arg643Ter	p.R643*	ENST00000264731	NM_003722.4	643	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	207	372	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289271	33289271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	111	379	2	ENST00000374542.5:c.281G>A	p.Arg94His	p.R94H	ENST00000374542	NM_001141970.1	94	cGt/cAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	150	424	2	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	75	293	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	197	816	4	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	108	383	1	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	105	488	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	282	694	3	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	105	364	1	ENST00000234420.5:c.3312delT	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39629562	39629562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	78	313	0	ENST00000262039.4:c.2260del	p.Thr754GlnfsTer7	p.T754Qfs*7	ENST00000262039	NM_002647.2	752	acA/ac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89337296	89337296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	107	497	0	ENST00000301030.4:c.7735C>T	p.Arg2579Cys	p.R2579C	ENST00000301030	NM_001256183.1	2579	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630938	187630938	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	86	474	0	ENST00000441802.2:c.44T>G	p.Phe15Cys	p.F15C	ENST00000441802	NM_005245.3	15	tTc/tGc																																																																														
TET2	54790	MSKCC	GRCh37	4	106158187	106158187	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	79	348	1	ENST00000380013.4:c.3088C>T	p.Gln1030Ter	p.Q1030*	ENST00000380013	NM_001127208.2	1030	Cag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	30143440	30143440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	73	241	0	ENST00000389048.3:c.86C>T	p.Ala29Val	p.A29V	ENST00000389048	NM_004304.4	29	gCg/gTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	74	304	3	ENST00000375759.3:c.9950delC	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162414	47162414	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	118	461	0	ENST00000409792.3:c.3712del	p.Ser1238LeufsTer21	p.S1238Lfs*21	ENST00000409792	NM_014159.6	1238	Tct/ct																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432117	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	58	591	0	ENST00000257555.6:c.864_865del	p.Pro291ArgfsTer25	p.P291Rfs*25	ENST00000257555		288	ggGCcc/ggcc																																																																														
ALK	238	MSKCC	GRCh37	2	30143052	30143052	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	135	614	1	ENST00000389048.3:c.474del	p.Glu160ArgfsTer26	p.E160Rfs*26	ENST00000389048	NM_004304.4	158	ccC/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099468	157099470	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs1429292576		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	50	202	0	ENST00000346085.5:c.413_415del	p.Asn138del	p.N138del	ENST00000346085	NM_020732.3	135	tcCAAc/tcc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905324	50905324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	181	808	1	ENST00000440232.2:c.537del	p.Arg180GlyfsTer3	p.R180Gfs*3	ENST00000440232	NM_002691.3	178	Ggg/gg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120199	70120199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	109	502	1	ENST00000245479.2:c.1201C>T	p.Gln401Ter	p.Q401*	ENST00000245479	NM_000346.3	401	Cag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508473	106508473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	34	183	0	ENST00000359195.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000359195	NM_002649.2	156	gCg/gTg																																																																														
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	140	558	1	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448480	49448480	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	69	505	0	ENST00000301067.7:c.231del	p.His77GlnfsTer53	p.H77Qfs*53	ENST00000301067	NM_003482.3	77	caC/ca																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204992	128204992	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	117	591	0	ENST00000341105.2:c.449del	p.Gly150GlufsTer68	p.G150Efs*68	ENST00000341105	NM_032638.4	150	gGa/ga																																																																														
SESN3	143686	MSKCC	GRCh37	11	94924618	94924618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	172	600	0	ENST00000536441.1:c.292C>T	p.Arg98Cys	p.R98C	ENST00000536441	NM_144665.3	98	Cgc/Tgc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376683	118376683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149340870		P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	42	415	0	ENST00000534358.1:c.10076C>T	p.Ala3359Val	p.A3359V	ENST00000534358	NM_005933.3	3359	gCg/gTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223967	36223967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	195	767	0	ENST00000222270.7:c.6517C>T	p.Arg2173Trp	p.R2173W	ENST00000222270	NM_014727.1	2173	Cgg/Tgg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987117	36987117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	125	560	0	ENST00000354822.5:c.572G>A	p.Arg191His	p.R191H	ENST00000354822	NM_001079668.2	191	cGc/cAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	127	492	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																														
ATRX	546	MSKCC	GRCh37	X	76764100	76764100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	32	216	0	ENST00000373344.5:c.7208G>A	p.Ser2403Asn	p.S2403N	ENST00000373344	NM_000489.3	2403	aGc/aAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779184	3779184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	100	503	0	ENST00000262367.5:c.5864C>T	p.Ala1955Val	p.A1955V	ENST00000262367	NM_004380.2	1955	gCg/gTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778371	3778371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	83	593	2	ENST00000262367.5:c.6677C>T	p.Ala2226Val	p.A2226V	ENST00000262367	NM_004380.2	2226	gCg/gTg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4117578	4117578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	150	575	0	ENST00000262948.5:c.142G>A	p.Glu48Lys	p.E48K	ENST00000262948	NM_030662.3	48	Gag/Aag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11308079	11308079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	181	728	1	ENST00000361445.4:c.913G>T	p.Gly305Cys	p.G305C	ENST00000361445	NM_004958.3	305	Ggc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258976	16258976	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	140	492	0	ENST00000375759.3:c.6241C>T	p.Arg2081Ter	p.R2081*	ENST00000375759	NM_015001.2	2081	Cga/Tga																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932076	36932076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	120	538	0	ENST00000361632.4:c.2393G>T	p.Gly798Val	p.G798V	ENST00000361632		798	gGg/gTg																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176054953	176054953	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	147	511	0	ENST00000367669.3:c.1100T>C	p.Leu367Ser	p.L367S	ENST00000367669	NM_022457.5	367	tTg/tCg																																																																														
FH	2271	MSKCC	GRCh37	1	241671901	241671901	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	98	368	0	ENST00000366560.3:c.738+2T>C		p.X246_splice	ENST00000366560	NM_000143.3	246																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71943988	71943988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	178	594	0	ENST00000298229.2:c.1921C>T	p.Arg641Trp	p.R641W	ENST00000298229	NM_001567.3	641	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133209309	133209309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	143	584	1	ENST00000320574.5:c.6077G>T	p.Arg2026Met	p.R2026M	ENST00000320574	NM_006231.2	2026	aGg/aTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563231	21563231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	155	722	0	ENST00000382592.4:c.688C>T	p.His230Tyr	p.H230Y	ENST00000382592	NM_014572.2	230	Cac/Tac																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563345	21563345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	208	931	0	ENST00000382592.4:c.574G>A	p.Glu192Lys	p.E192K	ENST00000382592	NM_014572.2	192	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	42058859	42058859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	97	353	0	ENST00000219905.7:c.8579G>A	p.Arg2860Gln	p.R2860Q	ENST00000219905	NM_001164273.1	2860	cGg/cAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678391	88678391	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	195	855	3	ENST00000360948.2:c.1145del	p.Asn382ThrfsTer32	p.N382Tfs*32	ENST00000360948	NM_001012338.2	382	aAc/ac																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354362	354362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	164	670	1	ENST00000262320.3:c.1196T>C	p.Val399Ala	p.V399A	ENST00000262320	NM_003502.3	399	gTg/gCg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134963	2134963	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	196	761	0	ENST00000219476.3:c.4505T>C	p.Leu1502Pro	p.L1502P	ENST00000219476	NM_000548.3	1502	cTg/cCg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15938115	15938115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	82	276	0	ENST00000268712.3:c.7099C>T	p.Pro2367Ser	p.P2367S	ENST00000268712	NM_006311.3	2367	Cca/Tca																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40364201	40364201	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	211	1000	0	ENST00000293328.3:c.1481T>C	p.Val494Ala	p.V494A	ENST00000293328	NM_012448.3	494	gTg/gCg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40371795	40371795	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	14	233	0	ENST00000293328.3:c.616C>T	p.Gln206Ter	p.Q206*	ENST00000293328	NM_012448.3	206	Cag/Tag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59924499	59924499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	127	386	0	ENST00000259008.2:c.590C>A	p.Ser197Tyr	p.S197Y	ENST00000259008	NM_032043.2	197	tCt/tAt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117927	70117927	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	60	287	0	ENST00000245479.2:c.395A>G	p.Asn132Ser	p.N132S	ENST00000245479	NM_000346.3	132	aAc/aGc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610562	10610562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	193	717	0	ENST00000171111.5:c.148C>T	p.Arg50Cys	p.R50C	ENST00000171111	NM_203500.1	50	Cgc/Tgc																																																																														
ERF	2077	MSKCC	GRCh37	19	42752787	42752787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	175	756	1	ENST00000222329.4:c.1477C>T	p.Arg493Cys	p.R493C	ENST00000222329	NM_006494.2	493	Cgc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419834	41419834	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	56	258	0	ENST00000373198.4:c.486+1G>T		p.X162_splice	ENST00000373198	NM_133170.3	162																																																																															
ERG	2078	MSKCC	GRCh37	21	39817459	39817459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	124	459	1	ENST00000288319.7:c.104C>T	p.Ala35Val	p.A35V	ENST00000288319	NM_182918.3	35	gCg/gTg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665333	138665333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	153	781	1	ENST00000330315.3:c.232T>C	p.Ser78Pro	p.S78P	ENST00000330315	NM_023067.3	78	Tcc/Ccc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919293	178919293	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	55	193	0	ENST00000263967.3:c.778T>C	p.Tyr260His	p.Y260H	ENST00000263967	NM_006218.2	260	Tac/Cac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629493	187629493	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	117	614	1	ENST00000441802.2:c.1489T>C	p.Tyr497His	p.Y497H	ENST00000441802	NM_005245.3	497	Tac/Cac																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522614	176522614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	150	703	0	ENST00000292408.4:c.1711G>A	p.Asp571Asn	p.D571N	ENST00000292408	NM_213647.1	571	Gac/Aac																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523655	176523655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	151	745	0	ENST00000292408.4:c.2066C>T	p.Pro689Leu	p.P689L	ENST00000292408	NM_213647.1	689	cCg/cTg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200345	138200345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	119	414	1	ENST00000237289.4:c.1763C>T	p.Ala588Val	p.A588V	ENST00000237289	NM_001270507.1	588	gCt/gTt																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200369	138200369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	89	444	0	ENST00000237289.4:c.1787G>A	p.Arg596Gln	p.R596Q	ENST00000237289	NM_001270507.1	596	cGg/cAg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005591	150005591	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	88	312	0	ENST00000253339.5:c.634G>T	p.Gly212Ter	p.G212*	ENST00000253339		212	Gga/Tga																																																																														
PARK2	5071	MSKCC	GRCh37	6	161969982	161969983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	98	518	1	ENST00000366898.1:c.986dup	p.Val330ArgfsTer17	p.V330Rfs*17	ENST00000366898	NM_004562.2	329	ggc/ggGc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129931	69129931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	30	270	0	ENST00000288368.4:c.4685C>A	p.Ala1562Asp	p.A1562D	ENST00000288368	NM_024870.2	1562	gCt/gAt																																																																														
NBN	4683	MSKCC	GRCh37	8	90995032	90995032	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	100	454	0	ENST00000265433.3:c.89A>G	p.Asn30Ser	p.N30S	ENST00000265433	NM_002485.4	30	aAc/aGc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376641	8376641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	88	437	0	ENST00000356435.5:c.4472C>T	p.Ala1491Val	p.A1491V	ENST00000356435		1491	gCc/gTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412624	139412624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	149	652	1	ENST00000277541.6:c.1220C>T	p.Pro407Leu	p.P407L	ENST00000277541	NM_017617.3	407	cCg/cTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041612	47041612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	171	303	1	ENST00000329236.7:c.1603C>T	p.Arg535Trp	p.R535W	ENST00000329236	NM_001204466.1	535	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152055670	152055670	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	179	655	0	ENST00000262189.6:c.250+2T>C		p.X84_splice	ENST00000262189	NM_170606.2	84																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156838020	156838020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	189	704	0	ENST00000524377.1:c.553C>T	p.His185Tyr	p.H185Y	ENST00000524377	NM_002529.3	185	Cac/Tac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830824	72830824	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	249	680	0	ENST00000268489.5:c.5757del	p.Glu1920SerfsTer77	p.E1920Sfs*77	ENST00000268489	NM_006885.3	1919	aaA/aa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085824	16085824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	39	434	1	ENST00000281043.3:c.1000G>A	p.Ala334Thr	p.A334T	ENST00000281043	NM_005378.4	334	Gcc/Acc																																																																														
VHL	7428	MSKCC	GRCh37	3	10188279	10188295	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTTGACGGACAGCCT	ATGTTGACGGACAGCCT	-			P-0036374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	36	814	0	ENST00000256474.2:c.424_440del	p.Val142PhefsTer26	p.V142Ffs*26	ENST00000256474	NM_000551.3	141	aATGTTGACGGACAGCCT/a																																																																														
SETD2	29072	MSKCC	GRCh37	3	47129739	47129739	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0036374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	24	330	0	ENST00000409792.3:c.5143-2A>T		p.X1715_splice	ENST00000409792	NM_014159.6	1715																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53240034	53240034	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	69	340	2	ENST00000375401.3:c.1407T>A	p.Tyr469Ter	p.Y469*	ENST00000375401	NM_004187.3	469	taT/taA																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156720	20156720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	25	229	0	ENST00000379607.5:c.37C>T	p.Arg13Cys	p.R13C	ENST00000379607	NM_001412.3	13	Cgc/Tgc																																																																														
MET	4233	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0036387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	51	703	0	ENST00000397752.3:c.3028+2T>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	123	355	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	75	458	0	ENST00000269305.4:c.657delC	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100049	157100049	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	12	65	1	ENST00000346085.5:c.986C>G	p.Ala329Gly	p.A329G	ENST00000346085	NM_020732.3	329	gCa/gGa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	33	317	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068283	30068283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	34	343	0	ENST00000331968.5:c.2116G>T	p.Asp706Tyr	p.D706Y	ENST00000331968	NM_002742.2	706	Gac/Tac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435924	56435925	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0036389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	39	377	0	ENST00000407977.2:c.1211_1212dup	p.Leu405AlafsTer15	p.L405Afs*15	ENST00000407977		404	-/GC																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484233	8484233	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200684369		P-0036389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	52	517	0	ENST00000356435.5:c.3299C>T	p.Thr1100Met	p.T1100M	ENST00000356435		1100	aCg/aTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70342671	70342671	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	77	316	0	ENST00000374080.3:c.1432G>C	p.Asp478His	p.D478H	ENST00000374080		478	Gac/Cac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0036390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	8	214	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106434	27106434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	75	302	0	ENST00000324856.7:c.6046del	p.Leu2016CysfsTer14	p.L2016Cfs*14	ENST00000324856	NM_006015.4	2015	atC/at																																																																														
RHOA	387	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	129	489	0	ENST00000418115.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000418115	NM_001664.2	42	tAt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	33	573	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	32	249	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112175780	112175780	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	54	266	0	ENST00000257430.4:c.4490del	p.Pro1497GlnfsTer10	p.P1497Qfs*10	ENST00000257430	NM_000038.5	1497	Cca/ca																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	164	429	0	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																																																														
FANCA	2175	MSKCC	GRCh37	16	89813023	89813023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	110	574	0	ENST00000389301.3:c.3482C>T	p.Thr1161Met	p.T1161M	ENST00000389301	NM_000135.2	1161	aCg/aTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747075	40747075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199637632		P-0036494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	65	539	0	ENST00000373198.4:c.3007G>A	p.Val1003Ile	p.V1003I	ENST00000373198	NM_133170.3	1003	Gtc/Atc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276378	115276482	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAACTTTGGTTACAGTTCCTTCAAAATGTTCAATGCTGATATCTTCAAAAATGACTGTTCCTTGAGGCAATAGTCTGACATCTGTTGCAACTTCTTTACCCTAA	ATAACTTTGGTTACAGTTCCTTCAAAATGTTCAATGCTGATATCTTCAAAAATGACTGTTCCTTGAGGCAATAGTCTGACATCTGTTGCAACTTCTTTACCCTAA	-			P-0036494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	87	570	0	ENST00000438362.2:c.850-4_950del		p.X284_splice	ENST00000438362	NM_001242891.1	284																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151874194	151874194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	93	428	2	ENST00000262189.6:c.8344G>T	p.Asp2782Tyr	p.D2782Y	ENST00000262189	NM_170606.2	2782	Gat/Tat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	37	266	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	23	307	0				ENST00000310581	NM_198253.2																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10247782	10247782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	24	601	1	ENST00000340748.4:c.4420G>A	p.Gly1474Arg	p.G1474R	ENST00000340748		1474	Ggg/Agg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50916765	50916765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	12	362	2	ENST00000440232.2:c.2237G>T	p.Ser746Ile	p.S746I	ENST00000440232	NM_002691.3	746	aGc/aTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710580	40710580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	35	650	0	ENST00000373198.4:c.4271A>G	p.Asp1424Gly	p.D1424G	ENST00000373198	NM_133170.3	1424	gAc/gGc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190826	11190826	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	44	316	0	ENST00000361445.4:c.5373T>G	p.His1791Gln	p.H1791Q	ENST00000361445	NM_004958.3	1791	caT/caG																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255338	16255338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200134542		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	32	325	1	ENST00000375759.3:c.2603C>T	p.Ala868Val	p.A868V	ENST00000375759	NM_015001.2	868	gCg/gTg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599988	28599988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	35	537	0	ENST00000253063.3:c.870G>T	p.Glu290Asp	p.E290D	ENST00000253063	NM_031459.4	290	gaG/gaT																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932400	36932400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	52	541	0	ENST00000361632.4:c.2069C>T	p.Thr690Met	p.T690M	ENST00000361632		690	aCg/aTg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748102	72748102	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	118	382	0	ENST00000357731.5:c.76T>G	p.Cys26Gly	p.C26G	ENST00000357731	NM_173808.2	26	Tgc/Ggc																																																																														
RIT1	6016	MSKCC	GRCh37	1	155880485	155880485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	30	392	0	ENST00000368323.3:c.68A>C	p.Lys23Thr	p.K23T	ENST00000368323	NM_006912.5	23	aAa/aCa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740212	162740212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	56	387	0	ENST00000367921.3:c.1414G>A	p.Asp472Asn	p.D472N	ENST00000367921	NM_006182.2	472	Gat/Aat																																																																														
DDR2	4921	MSKCC	GRCh37	1	162743288	162743288	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	12	167	0	ENST00000367921.3:c.1758A>C	p.Glu586Asp	p.E586D	ENST00000367921	NM_006182.2	586	gaA/gaC																																																																														
CDC73	79577	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	67	326	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																														
IL10	3586	MSKCC	GRCh37	1	206942067	206942067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	89	291	0	ENST00000423557.1:c.451G>A	p.Glu151Lys	p.E151K	ENST00000423557	NM_000572.2	151	Gag/Aag																																																																														
RET	5979	MSKCC	GRCh37	10	43606911	43606911	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	62	647	0	ENST00000355710.3:c.1520C>A	p.Ser507Ter	p.S507*	ENST00000355710	NM_020975.4	507	tCa/tAa																																																																														
RET	5979	MSKCC	GRCh37	10	43607663	43607663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	191	685	1	ENST00000355710.3:c.1639G>T	p.Asp547Tyr	p.D547Y	ENST00000355710	NM_020975.4	547	Gat/Tat																																																																														
TET1	80312	MSKCC	GRCh37	10	70332565	70332565	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185830524		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	96	393	0	ENST00000373644.4:c.470C>T	p.Ser157Leu	p.S157L	ENST00000373644	NM_030625.2	157	tCg/tTg																																																																														
TET1	80312	MSKCC	GRCh37	10	70450904	70450904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	38	379	0	ENST00000373644.4:c.5744C>T	p.Ala1915Val	p.A1915V	ENST00000373644	NM_030625.2	1915	gCt/gTt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683424	88683424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	51	181	0	ENST00000372037.3:c.1547G>T	p.Arg516Ile	p.R516I	ENST00000372037	NM_004329.2	516	aGa/aTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	21	348	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920404	114920404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	42	398	0	ENST00000543371.1:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000543371	NM_001198531.1	449	Gca/Aca																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251853	8251853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	152	474	0	ENST00000335790.3:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000335790	NM_002315.2	75	cGa/cAa																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94170371	94170371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	23	292	0	ENST00000323929.3:c.1898G>A	p.Arg633Gln	p.R633Q	ENST00000323929	NM_005591.3	633	cGa/cAa																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94180586	94180586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	75	314	0	ENST00000323929.3:c.1582G>A	p.Ala528Thr	p.A528T	ENST00000323929	NM_005591.3	528	Gca/Aca																																																																														
SESN3	143686	MSKCC	GRCh37	11	94908780	94908780	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	88	419	0	ENST00000536441.1:c.1274T>G	p.Val425Gly	p.V425G	ENST00000536441	NM_144665.3	425	gTt/gGt																																																																														
ATM	472	MSKCC	GRCh37	11	108142026	108142026	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	71	392	0	ENST00000278616.4:c.2970T>G	p.Ile990Met	p.I990M	ENST00000278616	NM_000051.3	990	atT/atG																																																																														
CBL	867	MSKCC	GRCh37	11	119149251	119149251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	12	455	1	ENST00000264033.4:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000264033	NM_005188.3	420	cGa/cAa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419112	419112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	27	243	0	ENST00000399788.2:c.3235G>A	p.Asp1079Asn	p.D1079N	ENST00000399788	NM_001042603.1	1079	Gac/Aac																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793390	18793390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	17	361	1	ENST00000266497.5:c.4087G>A	p.Ala1363Thr	p.A1363T	ENST00000266497		1363	Gca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378649	25378649	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	75	346	0	ENST00000256078.4:c.349A>C	p.Lys117Gln	p.K117Q	ENST00000256078	NM_033360.2	117	Aaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	25	360	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	12	388	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436643	49436643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	141	475	0	ENST00000301067.7:c.5663C>T	p.Ser1888Phe	p.S1888F	ENST00000301067	NM_003482.3	1888	tCc/tTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	95	407	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864148	57864148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	40	389	0	ENST00000228682.2:c.1625G>A	p.Arg542His	p.R542H	ENST00000228682	NM_005269.2	542	cGc/cAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118902	115118903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	69	260	0	ENST00000257566.3:c.438dup	p.Ala147SerfsTer13	p.A147Sfs*13	ENST00000257566	NM_016569.3	146	-/A																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	109	395	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																																																														
POLE	5426	MSKCC	GRCh37	12	133257249	133257249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	32	389	2	ENST00000320574.5:c.229C>T	p.Arg77Cys	p.R77C	ENST00000320574	NM_006231.2	77	Cgc/Tgc																																																																														
CDK8	1024	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	15	309	0	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967528	26967528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	13	244	0	ENST00000381527.3:c.671T>G	p.Phe224Cys	p.F224C	ENST00000381527	NM_001260.1	224	tTt/tGt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28602426	28602426	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	37	340	0	ENST00000241453.7:c.1943-1G>A		p.X648_splice	ENST00000241453	NM_004119.2	648																																																																															
FLT1	2321	MSKCC	GRCh37	13	28979966	28979966	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs61763181		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	19	508	0	ENST00000282397.4:c.1502G>T	p.Arg501Ile	p.R501I	ENST00000282397	NM_002019.4	501	aGa/aTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910615	32910615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	14	298	0	ENST00000380152.3:c.2123C>A	p.Ser708Tyr	p.S708Y	ENST00000380152		708	tCt/tAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913065	32913065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	66	340	0	ENST00000380152.3:c.4573C>A	p.His1525Asn	p.H1525N	ENST00000380152		1525	Cat/Aat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944627	32944627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	98	441	0	ENST00000380152.3:c.8420C>T	p.Ser2807Leu	p.S2807L	ENST00000380152		2807	tCg/tTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972596	32972596	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	68	327	0	ENST00000380152.3:c.9946G>T	p.Glu3316Ter	p.E3316*	ENST00000380152		3316	Gaa/Taa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73335850	73335850	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	37	337	0	ENST00000377767.4:c.2445A>C	p.Lys815Asn	p.K815N	ENST00000377767	NM_014953.3	815	aaA/aaC																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68353761	68353761	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	15	248	0	ENST00000487270.1:c.596T>G	p.Ile199Ser	p.I199S	ENST00000487270	NM_133509.3	199	aTt/aGt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562587	95562587	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	75	245	0	ENST00000343455.3:c.4670A>C	p.Lys1557Thr	p.K1557T	ENST00000343455	NM_177438.2	1557	aAa/aCa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571510	95571510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	42	298	0	ENST00000343455.3:c.3167G>A	p.Ser1056Asn	p.S1056N	ENST00000343455	NM_177438.2	1056	aGc/aAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95584041	95584041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	23	394	0	ENST00000343455.3:c.1427G>A	p.Ser476Asn	p.S476N	ENST00000343455	NM_177438.2	476	aGc/aAc																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023066	33023066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	71	267	0	ENST00000300177.4:c.175G>A	p.Gly59Arg	p.G59R	ENST00000300177	NM_001191322.1	59	Ggg/Agg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670452	88670452	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143617169		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	64	221	0	ENST00000360948.2:c.1234G>A	p.Glu412Lys	p.E412K	ENST00000360948	NM_001012338.2	412	Gaa/Aaa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641249	3641249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	224	646	2	ENST00000294008.3:c.2390G>A	p.Gly797Asp	p.G797D	ENST00000294008	NM_032444.2	797	gGc/gAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778758	3778758	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	72	745	0	ENST00000262367.5:c.6290T>C	p.Met2097Thr	p.M2097T	ENST00000262367	NM_004380.2	2097	aTg/aCg																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349000	11349000	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	35	408	0	ENST00000332029.2:c.336T>G	p.Phe112Leu	p.F112L	ENST00000332029	NM_003745.1	112	ttT/ttG																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30133307	30133307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	41	481	0	ENST00000263025.4:c.191G>A	p.Arg64His	p.R64H	ENST00000263025	NM_002746.2	64	cGc/cAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888076	81888076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	31	291	0	ENST00000359376.3:c.221G>A	p.Arg74His	p.R74H	ENST00000359376	NM_002661.3	74	cGc/cAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81957097	81957097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	82	314	0	ENST00000359376.3:c.2315G>T	p.Arg772Ile	p.R772I	ENST00000359376	NM_002661.3	772	aGa/aTa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81968055	81968055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	31	259	0	ENST00000359376.3:c.2761G>A	p.Glu921Lys	p.E921K	ENST00000359376	NM_002661.3	921	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371746	89371746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	28	401	0	ENST00000301030.4:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000301030	NM_001256183.1	32	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	23	505	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7983112	7983112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	42	423	1	ENST00000319144.4:c.902G>A	p.Gly301Glu	p.G301E	ENST00000319144	NM_001139.2	301	gGa/gAa																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110655	8110655	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	48	409	0	ENST00000585124.1:c.237T>G	p.Ile79Met	p.I79M	ENST00000585124	NM_004217.3	79	atT/atG																																																																														
NF1	4763	MSKCC	GRCh37	17	29533316	29533316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	17	189	0	ENST00000358273.4:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000358273	NM_001042492.2	440	cGa/cAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29663484	29663484	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	32	336	0	ENST00000358273.4:c.6140C>A	p.Ser2047Ter	p.S2047*	ENST00000358273	NM_001042492.2	2047	tCa/tAa																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30320971	30320971	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	23	461	0	ENST00000322652.5:c.1381T>C	p.Tyr461His	p.Y461H	ENST00000322652	NM_015355.2	461	Tat/Cat																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245303	41245303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	32	603	0	ENST00000357654.3:c.2245G>T	p.Asp749Tyr	p.D749Y	ENST00000357654	NM_007294.3	749	Gat/Tat																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58701094	58701094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	31	403	0	ENST00000305921.3:c.685G>A	p.Glu229Lys	p.E229K	ENST00000305921	NM_003620.3	229	Gaa/Aaa																																																																														
YES1	7525	MSKCC	GRCh37	18	736915	736915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	94	430	0	ENST00000314574.4:c.1184G>A	p.Arg395Gln	p.R395Q	ENST00000314574	NM_005433.3	395	cGa/cAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	46	367	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	22	308	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604755	48604755	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	91	301	0	ENST00000342988.3:c.1577A>C	p.Glu526Ala	p.E526A	ENST00000342988	NM_005359.5	526	gAa/gCa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244223	5244223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199851847		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	58	477	0	ENST00000357368.4:c.1259G>A	p.Arg420His	p.R420H	ENST00000357368	NM_002850.3	420	cGc/cAc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265724	10265724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	45	356	0	ENST00000340748.4:c.1453G>A	p.Glu485Lys	p.E485K	ENST00000340748		485	Gaa/Aaa																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19261504	19261504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	84	473	0	ENST00000162023.5:c.41A>G	p.Gln14Arg	p.Q14R	ENST00000162023		14	cAa/cGa																																																																														
AXL	558	MSKCC	GRCh37	19	41765576	41765576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	55	473	0	ENST00000301178.4:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000301178	NM_021913.4	818	Gaa/Aaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972919	25972919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	21	340	0	ENST00000435504.4:c.1506G>T	p.Glu502Asp	p.E502D	ENST00000435504		502	gaG/gaT																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26029109	26029109	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	19	255	0	ENST00000435504.4:c.241T>C	p.Tyr81His	p.Y81H	ENST00000435504		81	Tat/Cat																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	43	396	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48025841	48025841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	15	186	0	ENST00000234420.5:c.719G>A	p.Arg240Gln	p.R240Q	ENST00000234420	NM_000179.2	240	cGa/cAa																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99136593	99136593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	38	397	0	ENST00000074304.5:c.82G>A	p.Asp28Asn	p.D28N	ENST00000074304	NM_001134224.1	28	Gac/Aac																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266478	198266478	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	38	261	0	ENST00000335508.6:c.2358A>C	p.Lys786Asn	p.K786N	ENST00000335508	NM_012433.2	786	aaA/aaC																																																																														
CASP8	841	MSKCC	GRCh37	2	202131357	202131357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	40	337	0	ENST00000358485.4:c.325G>A	p.Glu109Lys	p.E109K	ENST00000358485	NM_001080125.1	109	Gaa/Aaa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209108194	209108194	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	80	347	0	ENST00000345146.2:c.655T>G	p.Tyr219Asp	p.Y219D	ENST00000345146	NM_005896.2	219	Tat/Gat																																																																														
BARD1	580	MSKCC	GRCh37	2	215645637	215645637	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	28	462	0	ENST00000260947.4:c.961A>C	p.Lys321Gln	p.K321Q	ENST00000260947	NM_000465.2	321	Aaa/Caa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730910	40730910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	35	401	1	ENST00000373198.4:c.3625C>T	p.Arg1209Trp	p.R1209W	ENST00000373198	NM_133170.3	1209	Cgg/Tgg																																																																														
AURKA	6790	MSKCC	GRCh37	20	54959339	54959339	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	26	328	0	ENST00000312783.6:c.361G>T	p.Glu121Ter	p.E121*	ENST00000312783	NM_198436.1	121	Gaa/Taa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42843742	42843742	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	139	387	0	ENST00000398585.3:c.1177A>C	p.Thr393Pro	p.T393P	ENST00000398585	NM_001135099.1	393	Act/Cct																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	34	219	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268823	41268823	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	74	395	0	ENST00000349496.5:c.1061A>C	p.Lys354Thr	p.K354T	ENST00000349496	NM_001904.3	354	aAg/aCg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275123	41275123	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	69	288	0	ENST00000349496.5:c.1289A>C	p.Asn430Thr	p.N430T	ENST00000349496	NM_001904.3	430	aAt/aCt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163731	47163731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	24	341	0	ENST00000409792.3:c.2395G>A	p.Asp799Asn	p.D799N	ENST00000409792	NM_014159.6	799	Gat/Aat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164855	47164855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	72	249	0	ENST00000409792.3:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000409792	NM_014159.6	424	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164922	47164922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	50	218	2	ENST00000409792.3:c.1204C>T	p.Arg402Trp	p.R402W	ENST00000409792	NM_014159.6	402	Cgg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164999	47164999	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	26	291	0	ENST00000409792.3:c.1127A>C	p.Lys376Thr	p.K376T	ENST00000409792	NM_014159.6	376	aAa/aCa																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119720928	119720928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	28	387	0	ENST00000316626.5:c.247G>A	p.Ala83Thr	p.A83T	ENST00000316626		83	Gcc/Acc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670327	134670327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	88	294	0	ENST00000398015.3:c.238C>T	p.Arg80Trp	p.R80W	ENST00000398015	NM_004441.4	80	Cgg/Tgg																																																																														
ATR	545	MSKCC	GRCh37	3	142242880	142242880	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	108	387	0	ENST00000350721.4:c.4107A>C	p.Leu1369Phe	p.L1369F	ENST00000350721	NM_001184.3	1369	ttA/ttC																																																																														
ATR	545	MSKCC	GRCh37	3	142281484	142281484	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	104	489	0	ENST00000350721.4:c.760G>T	p.Glu254Ter	p.E254*	ENST00000350721	NM_001184.3	254	Gaa/Taa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191328	185191328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	127	438	0	ENST00000265026.3:c.2209C>T	p.Pro737Ser	p.P737S	ENST00000265026	NM_004721.4	737	Cca/Tca																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186506987	186506987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	23	223	0	ENST00000323963.5:c.1153C>A	p.Leu385Ile	p.L385I	ENST00000323963		385	Ctt/Att																																																																														
KDR	3791	MSKCC	GRCh37	4	55981522	55981522	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	38	352	0	ENST00000263923.4:c.415A>C	p.Thr139Pro	p.T139P	ENST00000263923	NM_002253.2	139	Act/Cct																																																																														
TET2	54790	MSKCC	GRCh37	4	106196213	106196213	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	15	173	0	ENST00000380013.4:c.4546C>T	p.Arg1516Ter	p.R1516*	ENST00000380013	NM_001127208.2	1516	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332915	153332915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200698994		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	87	334	0	ENST00000281708.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000281708	NM_033632.3	14	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524651	187524651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	172	505	1	ENST00000441802.2:c.11029G>A	p.Asp3677Asn	p.D3677N	ENST00000441802	NM_005245.3	3677	Gac/Aac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524834	187524834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	80	525	1	ENST00000441802.2:c.10846G>A	p.Val3616Ile	p.V3616I	ENST00000441802	NM_005245.3	3616	Gta/Ata																																																																														
TERT	7015	MSKCC	GRCh37	5	1282547	1282547	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	36	332	0	ENST00000310581.5:c.1766T>G	p.Ile589Ser	p.I589S	ENST00000310581	NM_198253.2	589	aTc/aGc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56176913	56176913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	56	251	1	ENST00000399503.3:c.2183C>T	p.Ser728Phe	p.S728F	ENST00000399503	NM_005921.1	728	tCc/tTc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	18	178	0	ENST00000274335.5:c.1678G>T	p.Asp560Tyr	p.D560Y	ENST00000274335		560	Gac/Tac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591303	67591303	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	20	209	0	ENST00000274335.5:c.1801G>T	p.Glu601Ter	p.E601*	ENST00000274335		601	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112151211	112151211	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201093383		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	84	304	0	ENST00000257430.4:c.854A>G	p.Asp285Gly	p.D285G	ENST00000257430	NM_000038.5	285	gAc/gGc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	68	232	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	51	204	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112176873	112176873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	17	269	0	ENST00000257430.4:c.5582C>A	p.Ser1861Tyr	p.S1861Y	ENST00000257430	NM_000038.5	1861	tCt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112179452	112179452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	74	303	0	ENST00000257430.4:c.8161C>T	p.Arg2721Cys	p.R2721C	ENST00000257430	NM_000038.5	2721	Cgc/Tgc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931321	131931321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	28	381	0	ENST00000265335.6:c.2026G>A	p.Glu676Lys	p.E676K	ENST00000265335		676	Gaa/Aaa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515193	149515193	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	36	493	0	ENST00000261799.4:c.289G>T	p.Glu97Ter	p.E97*	ENST00000261799	NM_002609.3	97	Gaa/Taa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057663	180057663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	78	721	0	ENST00000261937.6:c.292C>A	p.Leu98Met	p.L98M	ENST00000261937	NM_182925.4	98	Ctg/Atg																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271393	26271393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	25	325	0	ENST00000305910.3:c.220G>T	p.Glu74Ter	p.E74*	ENST00000305910	NM_003534.2	74	Gaa/Taa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803500	32803500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	210	452	1	ENST00000374899.4:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000374899	NM_018833.2	220	cGa/cAa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288569	33288569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	33	323	1	ENST00000374542.5:c.983G>A	p.Arg328His	p.R328H	ENST00000374542	NM_001141970.1	328	cGt/cAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120505	94120505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	54	287	0	ENST00000369303.4:c.546C>A	p.Phe182Leu	p.F182L	ENST00000369303	NM_004440.3	182	ttC/ttA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710904	117710904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	40	301	0	ENST00000368508.3:c.1368G>T	p.Lys456Asn	p.K456N	ENST00000368508	NM_002944.2	456	aaG/aaT																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997454	149997454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	107	405	0	ENST00000253339.5:c.2825A>G	p.Glu942Gly	p.E942G	ENST00000253339		942	gAa/gGa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023019	150023019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	142	479	0	ENST00000253339.5:c.244C>T	p.Arg82Ter	p.R82*	ENST00000253339		82	Cga/Tga																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683734	162683734	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	38	413	0	ENST00000366898.1:c.235G>T	p.Glu79Ter	p.E79*	ENST00000366898	NM_004562.2	79	Gaa/Taa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739875	41739875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	43	308	0	ENST00000242208.4:c.98C>A	p.Pro33His	p.P33H	ENST00000242208	NM_002192.2	33	cCc/cAc																																																																														
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs759145490		P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	15	253	0	ENST00000222390.5:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000222390	NM_000601.4	424	Cgt/Tgt																																																																														
MET	4233	MSKCC	GRCh37	7	116403225	116403225	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	120	437	0	ENST00000397752.3:c.2486A>C	p.Lys829Thr	p.K829T	ENST00000397752	NM_000245.2	829	aAa/aCa																																																																														
SMO	6608	MSKCC	GRCh37	7	128848686	128848686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	164	432	0	ENST00000249373.3:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000249373	NM_005631.4	451	Cgc/Tgc																																																																														
EZH2	2146	MSKCC	GRCh37	7	148506185	148506185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	39	297	0	ENST00000320356.2:c.2173G>A	p.Glu725Lys	p.E725K	ENST00000320356	NM_004456.4	725	Gaa/Aaa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148526853	148526853	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	75	346	0	ENST00000320356.2:c.451A>C	p.Lys151Gln	p.K151Q	ENST00000320356	NM_004456.4	151	Aaa/Caa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980570	70980570	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	60	472	0	ENST00000276594.2:c.807C>A	p.Phe269Leu	p.F269L	ENST00000276594	NM_024504.3	269	ttC/ttA																																																																														
TEK	7010	MSKCC	GRCh37	9	27212815	27212815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	161	490	1	ENST00000380036.4:c.2797G>A	p.Ala933Thr	p.A933T	ENST00000380036	NM_000459.3	933	Gcg/Acg																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80412494	80412494	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	16	242	0	ENST00000286548.4:c.547C>T	p.Arg183Ter	p.R183*	ENST00000286548	NM_002072.3	183	Cga/Tga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239929	98239929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	27	332	0	ENST00000331920.6:c.1403C>G	p.Ala468Gly	p.A468G	ENST00000331920	NM_000264.3	468	gCc/gGc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128201272	128201272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	111	399	1	ENST00000265960.3:c.1463C>T	p.Ser488Leu	p.S488L	ENST00000265960	NM_001006617.1	488	tCg/tTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135802643	135802643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	84	290	0	ENST00000298552.3:c.155C>G	p.Thr52Ser	p.T52S	ENST00000298552	NM_001162426.1	52	aCc/aGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034472	47034472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	17	262	0	ENST00000329236.7:c.326G>A	p.Arg109Gln	p.R109Q	ENST00000329236	NM_001204466.1	109	cGa/cAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412029	63412029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	26	296	0	ENST00000330258.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000330258	NM_152424.3	380	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76907795	76907795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	61	124	0	ENST00000373344.5:c.4366G>A	p.Glu1456Lys	p.E1456K	ENST00000373344	NM_000489.3	1456	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76953080	76953080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	25	210	0	ENST00000373344.5:c.233G>A	p.Arg78Gln	p.R78Q	ENST00000373344	NM_000489.3	78	cGa/cAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215244	123215244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	45	143	0	ENST00000218089.9:c.2790G>T	p.Met930Ile	p.M930I	ENST00000218089	NM_001042749.1	930	atG/atT																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161392	55161392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	32	311	0	ENST00000257290.5:c.3223G>A	p.Asp1075Asn	p.D1075N	ENST00000257290	NM_006206.4	1075	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	222	514	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
MPL	4352	MSKCC	GRCh37	1	43804305	43804305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	180	397	0	ENST00000372470.3:c.305G>A	p.Arg102His	p.R102H	ENST00000372470	NM_005373.2	102	cGt/cAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356256	66356256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	73	442	0	ENST00000273854.3:c.1241A>G	p.Tyr414Cys	p.Y414C	ENST00000273854	NM_004439.5	414	tAc/tGc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934117	39934117	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142236686		P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	33	486	0	ENST00000378444.4:c.482C>T	p.Ala161Val	p.A161V	ENST00000378444	NM_001123385.1	161	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	117	467	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133225983	133225983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	89	530	0	ENST00000320574.5:c.3914G>T	p.Gly1305Val	p.G1305V	ENST00000320574	NM_006231.2	1305	gGg/gTg																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	53	329	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29657372	29657372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	57	449	0	ENST00000358273.4:c.5668G>T	p.Gly1890Cys	p.G1890C	ENST00000358273	NM_001042492.2	1890	Ggc/Tgc																																																																														
LMO1	4004	MSKCC	GRCh37	11	8246195	8246195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	29	405	0	ENST00000335790.3:c.439C>A	p.Leu147Ile	p.L147I	ENST00000335790	NM_002315.2	147	Ctc/Atc																																																																														
PGR	5241	MSKCC	GRCh37	11	100933219	100933219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	80	367	1	ENST00000325455.5:c.2171G>A	p.Arg724Lys	p.R724K	ENST00000325455	NM_001202474.3	724	aGg/aAg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226171	2226171	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	141	561	0	ENST00000326181.6:c.1869del	p.Ser624ProfsTer10	p.S624Pfs*10	ENST00000326181	NM_032271.2	623	cGg/cg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831291	72831291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	45	324	0	ENST00000268489.5:c.5290G>T	p.Ala1764Ser	p.A1764S	ENST00000268489	NM_006885.3	1764	Gct/Tct																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59760989	59760989	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	48	430	0	ENST00000259008.2:c.3418G>T	p.Glu1140Ter	p.E1140*	ENST00000259008	NM_032043.2	1140	Gaa/Taa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225346734	225346734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	60	334	0	ENST00000264414.4:c.1904C>T	p.Ala635Val	p.A635V	ENST00000264414	NM_003590.4	635	gCc/gTc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56161684	56161684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	32	369	0	ENST00000399503.3:c.1181G>T	p.Ser394Ile	p.S394I	ENST00000399503	NM_005921.1	394	aGt/aTt																																																																														
APC	324	MSKCC	GRCh37	5	112162923	112162923	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	38	320	0	ENST00000257430.4:c.1530del	p.Phe510LeufsTer4	p.F510Lfs*4	ENST00000257430	NM_000038.5	509	acT/ac																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798747	135798747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	41	191	0	ENST00000298552.3:c.496del	p.Leu166Ter	p.L166*	ENST00000298552	NM_001162426.1	166	Ctg/tg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	20	618	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	55	550	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	103	775	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087360	27087360	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	67	545	0	ENST00000324856.7:c.1934C>A	p.Ser645Ter	p.S645*	ENST00000324856	NM_006015.4	645	tCa/tAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	396	523	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212522512	212522512	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	96	270	0	ENST00000342788.4:c.1913G>A	p.Trp638Ter	p.W638*	ENST00000342788	NM_005235.2	638	tGg/tAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	87	382	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226252155	226252155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	10	140	0	ENST00000366813.1:c.103G>A	p.Gly35Arg	p.G35R	ENST00000366813		35	Ggg/Agg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984163	2984163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	55	414	0	ENST00000396946.4:c.367G>A	p.Gly123Ser	p.G123S	ENST00000396946	NM_032415.4	123	Ggc/Agc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	36	464	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	184	730	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964167	28964167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	41	448	0	ENST00000282397.4:c.1735G>C	p.Val579Leu	p.V579L	ENST00000282397	NM_002019.4	579	Gtt/Ctt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878499	151878499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	65	648	0	ENST00000262189.6:c.6446C>T	p.Ser2149Leu	p.S2149L	ENST00000262189	NM_170606.2	2149	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949749	151949749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	39	485	0	ENST00000262189.6:c.1351C>G	p.His451Asp	p.H451D	ENST00000262189	NM_170606.2	451	Cac/Gac																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0029223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	133	449	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	392	733	1	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797337	135797337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	94	220	0	ENST00000298552.3:c.532G>A	p.Val178Ile	p.V178I	ENST00000298552	NM_001162426.1	178	Gtc/Atc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50479299	50479305	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCTCC	CCGCTCC	-			P-0029223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	13	249	0	ENST00000394963.4:c.150_156del	p.Ser51CysfsTer17	p.S51Cfs*17	ENST00000394963	NM_003076.4	49	taCCGCTCC/ta																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	44	401	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363358	40363358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	54	685	1	ENST00000397332.2:c.871G>A	p.Glu291Lys	p.E291K	ENST00000397332	NM_001033082.2	291	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	245	360	0				ENST00000310581	NM_198253.2																																																																																
STK11	6794	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	191	436	0	ENST00000326873.7:c.921-1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	300	624	0	ENST00000269305.4:c.817C>G	p.Arg273Gly	p.R273G	ENST00000269305	NM_001126112.2	273	Cgt/Ggt																																																																														
ALK	238	MSKCC	GRCh37	2	29606708	29606708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	174	503	0	ENST00000389048.3:c.1172G>T	p.Gly391Val	p.G391V	ENST00000389048	NM_004304.4	391	gGa/gTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332595	70332595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	217	531	0	ENST00000373644.4:c.500C>G	p.Pro167Arg	p.P167R	ENST00000373644	NM_030625.2	167	cCt/cGt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881118	37881118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	343	615	1	ENST00000269571.5:c.2447G>A	p.Arg816His	p.R816H	ENST00000269571		816	cGc/cAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533484	63533484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	306	625	0	ENST00000307078.5:c.1670G>T	p.Ser557Ile	p.S557I	ENST00000307078	NM_004655.3	557	aGc/aTc																																																																														
CENPA	1058	MSKCC	GRCh37	2	27009117	27009118	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	45	128	1	ENST00000335756.4:c.53_54delinsAA	p.Pro18Gln	p.P18Q	ENST00000335756	NM_001809.3	18	cCG/cAA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197780	66197780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	192	470	0	ENST00000273854.3:c.2919G>T	p.Trp973Cys	p.W973C	ENST00000273854	NM_004439.5	973	tgG/tgT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467538	66467539	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	133	374	0	ENST00000273854.3:c.730_731delinsAA	p.Pro244Asn	p.P244N	ENST00000273854	NM_004439.5	244	CCt/AAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187532656	187532656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	36	502	0	ENST00000441802.2:c.9737G>A	p.Gly3246Glu	p.G3246E	ENST00000441802	NM_005245.3	3246	gGa/gAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69021776	69021776	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	214	538	1	ENST00000288368.4:c.3064A>T	p.Thr1022Ser	p.T1022S	ENST00000288368	NM_024870.2	1022	Acc/Tcc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904830	101904830	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	33	377	0	ENST00000374994.4:c.818G>A	p.Trp273Ter	p.W273*	ENST00000374994	NM_004612.2	273	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	334	550	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	28	228	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133250211	133250211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	261	473	0	ENST00000320574.5:c.1309G>A	p.Val437Met	p.V437M	ENST00000320574	NM_006231.2	437	Gtg/Atg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62292679	62292679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1472	85	457	0	ENST00000508582.2:c.131C>T	p.Thr44Met	p.T44M	ENST00000508582		44	aCg/aTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749407	43749408	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	125	345	0	ENST00000382044.4:c.1398dup	p.Ile467TyrfsTer12	p.I467Yfs*12	ENST00000382044	NM_001141980.1	466	-/T																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448495	89448495	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	147	304	0	ENST00000336596.2:c.1459C>G	p.Leu487Val	p.L487V	ENST00000336596	NM_005233.5	487	Ctg/Gtg																																																																														
APC	324	MSKCC	GRCh37	5	112174867	112174868	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0036207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	130	264	0	ENST00000257430.4:c.3577_3578del	p.Gln1193ValfsTer14	p.Q1193Vfs*14	ENST00000257430	NM_000038.5	1192	aaACag/aaag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692922	89692922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	38	481	0	ENST00000371953.3:c.406T>C	p.Cys136Arg	p.C136R	ENST00000371953	NM_000314.4	136	Tgt/Cgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	18	317	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589563	67589564	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAAGCTGTA			P-0036210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	17	190	0	ENST00000274335.5:c.1328_1336dup	p.Glu443_Val445dup	p.E443_V445dup	ENST00000274335		443	-/GAAGCTGTA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589574	67589574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	21	215	0	ENST00000274335.5:c.1337G>A	p.Gly446Glu	p.G446E	ENST00000274335		446	gGg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	250	578	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	134	591	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141559	11141559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	136	614	0	ENST00000344626.4:c.3536A>G	p.Asn1179Ser	p.N1179S	ENST00000344626	NM_003072.3	1179	aAt/aGt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231108	46231108	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0036212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	56	515	0	ENST00000334344.6:c.1028T>G	p.Leu343Ter	p.L343*	ENST00000334344	NM_152641.2	343	tTa/tGa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95596409	95596409	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	60	348	0	ENST00000343455.3:c.559C>T	p.Arg187Ter	p.R187*	ENST00000343455	NM_177438.2	187	Cga/Tga																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99149894	99149894	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs368448330		P-0036212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	81	543	0	ENST00000074304.5:c.206C>T	p.Ala69Val	p.A69V	ENST00000074304	NM_001134224.1	69	gCg/gTg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52595818	52595818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	69	630	4	ENST00000394830.3:c.4097G>A	p.Arg1366Lys	p.R1366K	ENST00000394830	NM_018313.4	1366	aGa/aAa																																																																														
AR	367	MSKCC	GRCh37	X	66863154	66863154	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	153	326	0	ENST00000374690.3:c.1673A>G	p.Lys558Arg	p.K558R	ENST00000374690	NM_000044.3	558	aAg/aGg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894916	101894916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	129	431	0	ENST00000374994.4:c.469C>T	p.Arg157Ter	p.R157*	ENST00000374994	NM_004612.2	157	Cga/Tga																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910756	29910756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	48	465	0	ENST00000376809.5:c.296G>C	p.Arg99Pro	p.R99P	ENST00000376809	NM_002116.7	99	cGa/cCa																																																																														
MGA	23269	MSKCC	GRCh37	15	42042188	42042188	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	118	572	0	ENST00000219905.7:c.6383G>C	p.Ser2128Thr	p.S2128T	ENST00000219905	NM_001164273.1	2128	aGt/aCt																																																																														
NF1	4763	MSKCC	GRCh37	17	29557276	29557276	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0036232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	61	330	0	ENST00000358273.4:c.2991-2A>G		p.X997_splice	ENST00000358273	NM_001042492.2	997																																																																															
MET	4233	MSKCC	GRCh37	7	116415070	116415070	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	131	644	0	ENST00000397752.3:c.3164T>A	p.Leu1055His	p.L1055H	ENST00000397752	NM_000245.2	1055	cTc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	432	707	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
TP63	8626	MSKCC	GRCh37	3	189582168	189582168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	79	503	0	ENST00000264731.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000264731	NM_003722.4	243	Cgg/Tgg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28592672	28592672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	87	653	0	ENST00000241453.7:c.2473G>A	p.Val825Met	p.V825M	ENST00000241453	NM_004119.2	825	Gtg/Atg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566198	95566198	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	97	590	0	ENST00000343455.3:c.4125del	p.Pro1377LeufsTer2	p.P1377Lfs*2	ENST00000343455	NM_177438.2	1375	gaT/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	165	557	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	254	545	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	62	496	0	ENST00000227507.2:c.857C>A	p.Thr286Lys	p.T286K	ENST00000227507	NM_053056.2	286	aCa/aAa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193091424	193091424	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	55	359	0	ENST00000367435.3:c.94T>G	p.Trp32Gly	p.W32G	ENST00000367435	NM_024529.4	32	Tgg/Ggg																																																																														
NF1	4763	MSKCC	GRCh37	17	29483072	29483072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	54	405	0	ENST00000358273.4:c.132C>G	p.Ile44Met	p.I44M	ENST00000358273	NM_001042492.2	44	atC/atG																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341888	8341888	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	198	494	1	ENST00000356435.5:c.4752T>A	p.His1584Gln	p.H1584Q	ENST00000356435		1584	caT/caA																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53244013	53244013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	69	423	0	ENST00000375401.3:c.980G>T	p.Cys327Phe	p.C327F	ENST00000375401	NM_004187.3	327	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	133	482	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	128	549	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	129	658	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941889	71941889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	150	692	0	ENST00000298229.2:c.1247C>G	p.Ser416Cys	p.S416C	ENST00000298229	NM_001567.3	416	tCc/tGc																																																																														
ATM	472	MSKCC	GRCh37	11	108121480	108121481	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	83	414	0	ENST00000278616.4:c.1290_1291del	p.Cys430Ter	p.C430*	ENST00000278616	NM_000051.3	430	TGt/t																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066749	30066749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	134	560	0	ENST00000331968.5:c.2382G>T	p.Gln794His	p.Q794H	ENST00000331968	NM_002742.2	794	caG/caT																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472422	88472422	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	86	474	0	ENST00000360948.2:c.2133G>T	p.Arg711Ser	p.R711S	ENST00000360948	NM_001012338.2	711	agG/agT																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59934578	59934578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	85	363	0	ENST00000259008.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000259008	NM_032043.2	74	Gag/Cag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25990511	25990511	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	110	573	0	ENST00000435504.4:c.716A>C	p.Glu239Ala	p.E239A	ENST00000435504		239	gAa/gCa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630495	187630495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	154	707	1	ENST00000441802.2:c.487G>T	p.Ala163Ser	p.A163S	ENST00000441802	NM_005245.3	163	Gct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	147	603	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	85	354	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	51	138	1				ENST00000310581	NM_198253.2																																																																																
BRCA2	675	MSKCC	GRCh37	13	32913783	32913783	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	37	416	0	ENST00000380152.3:c.5291C>G	p.Ser1764Ter	p.S1764*	ENST00000380152		1764	tCa/tGa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436941	110436941	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	13	170	0	ENST00000375856.3:c.1460C>G	p.Ser487Cys	p.S487C	ENST00000375856	NM_003749.2	487	tCc/tGc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031997	26031997	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	29	341	0	ENST00000244661.2:c.292G>T	p.Glu98Ter	p.E98*	ENST00000244661	NM_003537.3	98	Gag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8507384	8507384	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	35	446	0	ENST00000356435.5:c.1594A>G	p.Ile532Val	p.I532V	ENST00000356435		532	Att/Gtt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	257	688	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	233	951	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033245	69033245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	302	541	0	ENST00000288368.4:c.3685G>A	p.Val1229Ile	p.V1229I	ENST00000288368	NM_024870.2	1229	Gtc/Atc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37882870	37882870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	189	731	0	ENST00000269571.5:c.2928C>A	p.Phe976Leu	p.F976L	ENST00000269571		976	ttC/ttA																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437568	56437568	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	37	556	0	ENST00000407977.2:c.894T>G	p.Cys298Trp	p.C298W	ENST00000407977		298	tgT/tgG																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36217174	36217174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	191	813	0	ENST00000222270.7:c.3923C>T	p.Ala1308Val	p.A1308V	ENST00000222270	NM_014727.1	1308	gCa/gTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	133	236	6				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	314	772	1	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0036357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	122	602	0	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149440464	149440464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	118	622	0	ENST00000286301.3:c.1930G>A	p.Glu644Lys	p.E644K	ENST00000286301	NM_005211.3	644	Gag/Aag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045491	47045491	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	170	266	0	ENST00000329236.7:c.2224G>T	p.Glu742Ter	p.E742*	ENST00000329236	NM_001204466.1	742	Gaa/Taa																																																																														
PGR	5241	MSKCC	GRCh37	11	100933301	100933301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	112	561	0	ENST00000325455.5:c.2089G>T	p.Asp697Tyr	p.D697Y	ENST00000325455	NM_001202474.3	697	Gat/Tat																																																																														
AR	367	MSKCC	GRCh37	X	66863172	66863172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	151	308	0	ENST00000374690.3:c.1691G>C	p.Gly564Ala	p.G564A	ENST00000374690	NM_000044.3	564	gGa/gCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	23	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0036360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	112	687	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245040	46245040	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	43	481	0	ENST00000334344.6:c.3134C>A	p.Ser1045Ter	p.S1045*	ENST00000334344	NM_152641.2	1045	tCg/tAg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149512356	149512356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	46	571	0	ENST00000261799.4:c.1084G>C	p.Ala362Pro	p.A362P	ENST00000261799	NM_002609.3	362	Gct/Cct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	84	279	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879686	37879686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	85	577	0	ENST00000269571.5:c.2061G>A	p.Met687Ile	p.M687I	ENST00000269571		687	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577587	7577587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	182	566	0	ENST00000269305.4:c.694A>T	p.Ile232Phe	p.I232F	ENST00000269305	NM_001126112.2	232	Atc/Ttc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	134	306	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	49	304	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	147	488	1	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108128310	108128310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	88	311	1	ENST00000278616.4:c.2353C>T	p.Arg785Cys	p.R785C	ENST00000278616	NM_000051.3	785	Cgt/Tgt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21630741	21630741	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	77	258	0	ENST00000421138.2:c.863A>T	p.Tyr288Phe	p.Y288F	ENST00000421138		288	tAt/tTt																																																																														
FLT1	2321	MSKCC	GRCh37	13	28964013	28964013	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	112	461	0	ENST00000282397.4:c.1889A>T	p.Asp630Val	p.D630V	ENST00000282397	NM_002019.4	630	gAt/gTt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37672016	37672016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	131	554	0	ENST00000447079.4:c.2801C>T	p.Pro934Leu	p.P934L	ENST00000447079	NM_015083.1	934	cCt/cTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	56	375	0	ENST00000263967.3:c.3062A>C	p.Tyr1021Ser	p.Y1021S	ENST00000263967	NM_006218.2	1021	tAc/tCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	211	705	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817754	3817754	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	140	742	1	ENST00000262367.5:c.3217C>T	p.Gln1073Ter	p.Q1073*	ENST00000262367	NM_004380.2	1073	Cag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	143	415	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423511	88423511	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	105	639	0	ENST00000360948.2:c.2324C>G	p.Ser775Ter	p.S775*	ENST00000360948	NM_001012338.2	775	tCa/tGa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675183	30675183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	210	617	0	ENST00000376406.3:c.3062G>C	p.Arg1021Thr	p.R1021T	ENST00000376406	NM_014641.2	1021	aGa/aCa																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348945	11348945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	94	455	0	ENST00000332029.2:c.391C>G	p.Gln131Glu	p.Q131E	ENST00000332029	NM_003745.1	131	Cag/Gag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651292	52651292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	208	536	0	ENST00000394830.3:c.1804G>A	p.Glu602Lys	p.E602K	ENST00000394830	NM_018313.4	602	Gag/Aag																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911194	29911194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	106	457	0	ENST00000376809.5:c.493C>G	p.Gln165Glu	p.Q165E	ENST00000376809	NM_002116.7	165	Cag/Gag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445917	49445917	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	352	1097	0	ENST00000301067.7:c.1549G>T	p.Glu517Ter	p.E517*	ENST00000301067	NM_003482.3	517	Gag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944503	40944503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	188	579	0	ENST00000373198.4:c.1999G>A	p.Glu667Lys	p.E667K	ENST00000373198	NM_133170.3	667	Gag/Aag																																																																														
CCND1	595	MSKCC	GRCh37	11	69462782	69462782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	176	603	1	ENST00000227507.2:c.595C>T	p.Pro199Ser	p.P199S	ENST00000227507	NM_053056.2	199	Ccg/Tcg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38178687	38178687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	95	443	1	ENST00000317025.8:c.1712C>T	p.Ser571Leu	p.S571L	ENST00000317025	NM_023034.1	571	tCa/tTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	143	220	0				ENST00000310581	NM_198253.2																																																																																
BRIP1	83990	MSKCC	GRCh37	17	59926549	59926549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	328	872	0	ENST00000259008.2:c.448G>A	p.Glu150Lys	p.E150K	ENST00000259008	NM_032043.2	150	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088724	27088724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	264	626	0	ENST00000324856.7:c.2333G>A	p.Gly778Glu	p.G778E	ENST00000324856	NM_006015.4	778	gGa/gAa																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196062	67196062	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	101	510	0	ENST00000312629.5:c.46G>T	p.Glu16Ter	p.E16*	ENST00000312629	NM_003952.2	16	Gag/Tag																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67196074	67196074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	98	495	0	ENST00000312629.5:c.58G>A	p.Glu20Lys	p.E20K	ENST00000312629	NM_003952.2	20	Gag/Aag																																																																														
CBL	867	MSKCC	GRCh37	11	119144637	119144637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	193	538	0	ENST00000264033.4:c.650C>G	p.Ser217Cys	p.S217C	ENST00000264033	NM_005188.3	217	tCt/tGt																																																																														
CBL	867	MSKCC	GRCh37	11	119144732	119144732	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	160	385	0	ENST00000264033.4:c.745C>G	p.Gln249Glu	p.Q249E	ENST00000264033	NM_005188.3	249	Cag/Gag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244016	46244016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	193	558	0	ENST00000334344.6:c.2110C>G	p.Gln704Glu	p.Q704E	ENST00000334344	NM_152641.2	704	Caa/Gaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49442937	49442937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	217	601	0	ENST00000301067.7:c.3971G>C	p.Arg1324Thr	p.R1324T	ENST00000301067	NM_003482.3	1324	aGa/aCa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068252	30068252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	76	513	0	ENST00000331968.5:c.2147C>T	p.Ser716Leu	p.S716L	ENST00000331968	NM_002742.2	716	tCa/tTa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100023	30100023	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	117	651	0	ENST00000331968.5:c.1597G>T	p.Glu533Ter	p.E533*	ENST00000331968	NM_002742.2	533	Gag/Tag																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987188	36987188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	123	699	0	ENST00000354822.5:c.501G>A	p.Met167Ile	p.M167I	ENST00000354822	NM_001079668.2	167	atG/atA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95583961	95583961	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	144	466	0	ENST00000343455.3:c.1507G>T	p.Glu503Ter	p.E503*	ENST00000343455	NM_177438.2	503	Gag/Tag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43738651	43738651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	135	685	0	ENST00000382044.4:c.2974C>G	p.Leu992Val	p.L992V	ENST00000382044	NM_001141980.1	992	Cta/Gta																																																																														
BLM	641	MSKCC	GRCh37	15	91358391	91358391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	92	587	0	ENST00000355112.3:c.4136C>G	p.Ser1379Cys	p.S1379C	ENST00000355112	NM_000057.2	1379	tCc/tGc																																																																														
BLM	641	MSKCC	GRCh37	15	91358414	91358414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	103	622	0	ENST00000355112.3:c.4159C>T	p.Gln1387Ter	p.Q1387*	ENST00000355112	NM_000057.2	1387	Caa/Taa																																																																														
BLM	641	MSKCC	GRCh37	15	91358483	91358483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	79	551	0	ENST00000355112.3:c.4228C>T	p.Leu1410Phe	p.L1410F	ENST00000355112	NM_000057.2	1410	Ctt/Ttt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657527	37657527	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	104	609	1	ENST00000447079.4:c.2444A>T	p.Tyr815Phe	p.Y815F	ENST00000447079	NM_015083.1	815	tAt/tTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244679	41244679	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	348	897	0	ENST00000357654.3:c.2869C>G	p.Gln957Glu	p.Q957E	ENST00000357654	NM_007294.3	957	Cag/Gag																																																																														
INSR	3643	MSKCC	GRCh37	19	7152901	7152901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	209	618	0	ENST00000302850.5:c.2067C>G	p.Phe689Leu	p.F689L	ENST00000302850	NM_000208.2	689	ttC/ttG																																																																														
NF2	4771	MSKCC	GRCh37	22	30032829	30032829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	124	421	0	ENST00000338641.4:c.204C>G	p.Ile68Met	p.I68M	ENST00000338641	NM_000268.3	68	atC/atG																																																																														
ATR	545	MSKCC	GRCh37	3	142226923	142226923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	158	510	1	ENST00000350721.4:c.4881G>T	p.Gln1627His	p.Q1627H	ENST00000350721	NM_001184.3	1627	caG/caT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539549	187539549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	89	499	0	ENST00000441802.2:c.8191G>A	p.Gly2731Arg	p.G2731R	ENST00000441802	NM_005245.3	2731	Ggg/Agg																																																																														
SDHA	6389	MSKCC	GRCh37	5	235293	235293	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	313	515	1	ENST00000264932.6:c.1099C>T	p.Gln367Ter	p.Q367*	ENST00000264932	NM_004168.2	367	Cag/Tag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871211	35871211	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	87	450	0	ENST00000303115.3:c.433G>C	p.Asp145His	p.D145H	ENST00000303115	NM_002185.3	145	Gac/Cac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30676075	30676075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	176	430	0	ENST00000376406.3:c.2281G>C	p.Glu761Gln	p.E761Q	ENST00000376406	NM_014641.2	761	Gag/Cag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266499	55266499	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	234	638	0	ENST00000275493.2:c.2791G>C	p.Glu931Gln	p.E931Q	ENST00000275493	NM_005228.3	931	Gaa/Caa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151835888	151835888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	164	461	0	ENST00000262189.6:c.14636G>A	p.Gly4879Glu	p.G4879E	ENST00000262189	NM_170606.2	4879	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152027786	152027786	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	302	794	1	ENST00000262189.6:c.289G>T	p.Glu97Ter	p.E97*	ENST00000262189	NM_170606.2	97	Gaa/Taa																																																																														
NBN	4683	MSKCC	GRCh37	8	90990497	90990497	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	190	577	0	ENST00000265433.3:c.535G>T	p.Glu179Ter	p.E179*	ENST00000265433	NM_002485.4	179	Gaa/Taa																																																																														
TEK	7010	MSKCC	GRCh37	9	27203085	27203085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	179	542	0	ENST00000380036.4:c.2177C>T	p.Ser726Phe	p.S726F	ENST00000380036	NM_000459.3	726	tCt/tTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	117	334	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	385	605	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																														
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	82	327	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857020	9857020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	41	249	0	ENST00000330684.3:c.4381G>A	p.Glu1461Lys	p.E1461K	ENST00000330684	NM_001134407.1	1461	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	469	249	0	ENST00000374080.3:c.130G>C	p.Gly44Arg	p.G44R	ENST00000374080		44	Ggt/Cgt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039344	47039344	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	705	352	0	ENST00000329236.7:c.736T>G	p.Tyr246Asp	p.Y246D	ENST00000329236	NM_001204466.1	246	Tac/Gac																																																																														
KIT	3815	MSKCC	GRCh37	4	55564575	55564575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	186	521	1	ENST00000288135.5:c.463C>T	p.Pro155Ser	p.P155S	ENST00000288135	NM_000222.2	155	Cct/Tct																																																																														
RARA	5914	MSKCC	GRCh37	17	38512309	38512309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	223	652	0	ENST00000254066.5:c.1220C>T	p.Pro407Leu	p.P407L	ENST00000254066	NM_000964.3	407	cCg/cTg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0036408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	169	643	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045136	47045136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	191	283	1	ENST00000329236.7:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000329236	NM_001204466.1	715	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	76	186	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27100863	27100863	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	102	455	0	ENST00000324856.7:c.4145A>T	p.Lys1382Met	p.K1382M	ENST00000324856	NM_006015.4	1382	aAg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105940	27105941	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	172	470	0	ENST00000324856.7:c.5551_5552insT	p.Thr1851IlefsTer3	p.T1851Ifs*3	ENST00000324856	NM_006015.4	1851	acc/aTcc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244344	46244344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	111	428	0	ENST00000334344.6:c.2438C>G	p.Ser813Cys	p.S813C	ENST00000334344	NM_152641.2	813	tCt/tGt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246315	46246315	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0036408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	127	394	0	ENST00000334344.6:c.4409C>G	p.Ser1470Ter	p.S1470*	ENST00000334344	NM_152641.2	1470	tCa/tGa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942177	81942177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	138	422	1	ENST00000359376.3:c.1714G>A	p.Asp572Asn	p.D572N	ENST00000359376	NM_002661.3	572	Gac/Aac																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66525091	66525091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	94	376	0	ENST00000358598.2:c.850G>T	p.Val284Leu	p.V284L	ENST00000358598	NM_212471.2	284	Gtg/Ttg																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627485	14627485	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	217	514	0	ENST00000254322.2:c.585G>C	p.Lys195Asn	p.K195N	ENST00000254322	NM_006145.1	195	aaG/aaC																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24158955	24158955	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0036408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	205	582	0	ENST00000263121.7:c.629-2A>T		p.X210_splice	ENST00000263121	NM_003073.3	210																																																																															
CHEK2	11200	MSKCC	GRCh37	22	29092938	29092938	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	156	515	0	ENST00000328354.6:c.1046A>T	p.Lys349Met	p.K349M	ENST00000328354	NM_007194.3	349	aAg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	245	551	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67198971	67198971	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	70	371	0	ENST00000312629.5:c.442C>G	p.Leu148Val	p.L148V	ENST00000312629	NM_003952.2	148	Ctt/Gtt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489573	40489573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	267	475	0	ENST00000264657.5:c.677C>T	p.Ser226Leu	p.S226L	ENST00000264657	NM_139276.2	226	tCa/tTa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021714	71021714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	124	387	0	ENST00000318789.4:c.1644G>C	p.Lys548Asn	p.K548N	ENST00000318789	NM_032682.5	548	aaG/aaC																																																																														
SUFU	51684	MSKCC	GRCh37	10	104356952	104356994	+	frameshift_variant	Frame_Shift_Del	DEL	CCAAGTGTGCCTGGGATGACCTGAGCCGGCCCCCCGAGGATGA	CCAAGTGTGCCTGGGATGACCTGAGCCGGCCCCCCGAGGATGA	-			P-0036411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	177	520	0	ENST00000369902.3:c.813_855del	p.Lys272ArgfsTer27	p.K272Rfs*27	ENST00000369902	NM_016169.3	271	gCCAAGTGTGCCTGGGATGACCTGAGCCGGCCCCCCGAGGATGAc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	149	730	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143044529	143044530	+	missense_variant	Missense_Mutation	DNP	TC	TC	AG			P-0036412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	20	358	1	ENST00000262992.4:c.1932_1933delinsCT	p.Gln644_Thr645delinsHisSer	p.Q644_T645delinsHS	ENST00000262992	NM_001101669.1	644	caGAca/caCTca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	62	598	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0036423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	157	814	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37680932	37680932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	75	489	1	ENST00000447079.4:c.3101C>T	p.Pro1034Leu	p.P1034L	ENST00000447079	NM_015083.1	1034	cCc/cTc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11094856	11094857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	148	991	0	ENST00000344626.4:c.31dup	p.Thr11AsnfsTer21	p.T11Nfs*21	ENST00000344626	NM_003072.3	10	gga/ggAa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727454	66727454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	14	524	0	ENST00000307102.5:c.170A>C	p.Lys57Thr	p.K57T	ENST00000307102	NM_002755.3	57	aAg/aCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	172	368	1				ENST00000310581	NM_198253.2																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	41	764	0	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	166	785	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																																																														
AKT2	208	MSKCC	GRCh37	19	40762839	40762839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	123	514	0	ENST00000392038.2:c.169G>A	p.Val57Ile	p.V57I	ENST00000392038	NM_001626.4	57	Gta/Ata																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665026	138665026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	26	149	0	ENST00000330315.3:c.539G>A	p.Gly180Asp	p.G180D	ENST00000330315	NM_023067.3	180	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0036439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	93	723	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711874	89711874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0036439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	39	457	0	ENST00000371953.3:c.493-1G>A		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																															
ARAF	369	MSKCC	GRCh37	X	47428265	47428265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	29	357	0	ENST00000377045.4:c.1225G>A	p.Val409Met	p.V409M	ENST00000377045	NM_001654.4	409	Gtg/Atg																																																																														
RET	5979	MSKCC	GRCh37	10	43609967	43609967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	95	870	0	ENST00000355710.3:c.1919C>T	p.Ala640Val	p.A640V	ENST00000355710	NM_020975.4	640	gCc/gTc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894991	101894991	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	43	344	0	ENST00000374994.4:c.544T>A	p.Tyr182Asn	p.Y182N	ENST00000374994	NM_004612.2	182	Tat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	40	111	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	30	194	1				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0036442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	173	576	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500574	149500574	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	99	517	0	ENST00000261799.4:c.2464-1G>A		p.X822_splice	ENST00000261799	NM_002609.3	822																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0036443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	76	630	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	83	630	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	58	391	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	285	732	0	ENST00000269305.4:c.454C>T	p.Pro152Ser	p.P152S	ENST00000269305	NM_001126112.2	152	Ccg/Tcg																																																																														
KDR	3791	MSKCC	GRCh37	4	55961013	55961013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	236	602	0	ENST00000263923.4:c.2927G>T	p.Gly976Val	p.G976V	ENST00000263923	NM_002253.2	976	gGa/gTa																																																																														
APC	324	MSKCC	GRCh37	5	112175486	112175487	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	158	475	0	ENST00000257430.4:c.4196dup	p.Ser1400PhefsTer9	p.S1400Ffs*9	ENST00000257430	NM_000038.5	1399	cgt/cGgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	21	408	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	336	528	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48954315	48954317	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0036449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	169	246	0	ENST00000267163.4:c.1439_1441del	p.Asn480del	p.N480del	ENST00000267163	NM_000321.2	479	gACAac/gac																																																																														
MET	4233	MSKCC	GRCh37	7	116398625	116398625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45587940		P-0036449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	231	400	0	ENST00000397752.3:c.2215C>T	p.Arg739Cys	p.R739C	ENST00000397752	NM_000245.2	739	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692830	89692830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	85	154	0	ENST00000371953.3:c.314G>A	p.Cys105Tyr	p.C105Y	ENST00000371953	NM_000314.4	105	tGt/tAt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193202190	193202190	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	177	231	0	ENST00000367435.3:c.1222A>T	p.Arg408Ter	p.R408*	ENST00000367435	NM_024529.4	408	Aga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55976606	55976606	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	258	460	0	ENST00000263923.4:c.1219G>T	p.Glu407Ter	p.E407*	ENST00000263923	NM_002253.2	407	Gag/Tag																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032159	26032159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	159	316	0	ENST00000244661.2:c.130C>G	p.Pro44Ala	p.P44A	ENST00000244661	NM_003537.3	44	Ccg/Gcg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469872	157469872	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	286	558	0	ENST00000346085.5:c.2666A>T	p.Gln889Leu	p.Q889L	ENST00000346085	NM_020732.3	889	cAg/cTg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372536	55372536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	353	658	0	ENST00000297316.4:c.1226G>T	p.Cys409Phe	p.C409F	ENST00000297316	NM_022454.3	409	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	105	463	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	190	558	1	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0036450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	101	396	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
APC	324	MSKCC	GRCh37	5	112175346	112175356	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAATTTTCT	TTGAATTTTCT	-			P-0036450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	129	256	0	ENST00000257430.4:c.4056_4066del	p.Glu1353ArgfsTer18	p.E1353Rfs*18	ENST00000257430	NM_000038.5	1352	gTTGAATTTTCT/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	47	380	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	42	504	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45394820	45394820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	14	234	1	ENST00000262160.6:c.529C>T	p.Pro177Ser	p.P177S	ENST00000262160	NM_005901.5	177	Cca/Tca																																																																														
CDC73	79577	MSKCC	GRCh37	1	193172923	193172923	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	18	209	0	ENST00000367435.3:c.973-2A>T		p.X325_splice	ENST00000367435	NM_024529.4	325																																																																															
PIK3C2G	5288	MSKCC	GRCh37	12	18719888	18719888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	31	260	0	ENST00000266497.5:c.3785C>A	p.Pro1262His	p.P1262H	ENST00000266497		1262	cCt/cAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41525896	41525896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	17	305	0	ENST00000263253.7:c.1171G>T	p.Ala391Ser	p.A391S	ENST00000263253	NM_001429.3	391	Gca/Tca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157517297	157517297	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0036451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	19	280	0	ENST00000346085.5:c.3863-2A>T		p.X1288_splice	ENST00000346085	NM_020732.3	1288																																																																															
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	12	338	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
AR	367	MSKCC	GRCh37	X	66942741	66942741	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs9332969		P-0036456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	25	249	0	ENST00000374690.3:c.2522G>A	p.Arg841His	p.R841H	ENST00000374690	NM_000044.3	841	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0036456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	61	281	2	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	1533	591	2	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	136	500	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
BTK	695	MSKCC	GRCh37	X	100630190	100630190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	111	245	0	ENST00000308731.7:c.83G>A	p.Arg28His	p.R28H	ENST00000308731	NM_000061.2	28	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175710	112175711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	55	338	0	ENST00000257430.4:c.4420dup	p.Ala1474GlyfsTer13	p.A1474Gfs*13	ENST00000257430	NM_000038.5	1473	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0036457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	254	475	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281395	49281395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	278	682	1	ENST00000282018.3:c.442C>A	p.His148Asn	p.H148N	ENST00000282018	NM_020377.2	148	Cat/Aat																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101047	41101047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	177	586	0	ENST00000373198.4:c.1309G>T	p.Ala437Ser	p.A437S	ENST00000373198	NM_133170.3	437	Gcc/Tcc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535387	66535387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	83	246	0	ENST00000273854.3:c.74C>A	p.Pro25Gln	p.P25Q	ENST00000273854	NM_004439.5	25	cCa/cAa																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	11	439	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	140	392	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	59	502	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	26	449	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	60	496	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																														
ATM	472	MSKCC	GRCh37	11	108142001	108142001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	92	387	1	ENST00000278616.4:c.2945G>A	p.Arg982His	p.R982H	ENST00000278616	NM_000051.3	982	cGt/cAt																																																																														
SRC	6714	MSKCC	GRCh37	20	36012597	36012597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	46	309	0	ENST00000358208.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000358208		14	cGg/cAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266051	41266631	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	AGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCA	AGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCA	-			P-0036459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	90	244	0	ENST00000349496.5:c.51_431del		p.X17_splice	ENST00000349496	NM_001904.3	17	ccAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAa/cca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	319	371	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	84	311	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	292	531	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528621	89528621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	61	142	0	ENST00000336596.2:c.2921C>T	p.Thr974Met	p.T974M	ENST00000336596	NM_005233.5	974	aCg/aTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161981	47161981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	98	398	0	ENST00000409792.3:c.4145C>T	p.Ala1382Val	p.A1382V	ENST00000409792	NM_014159.6	1382	gCt/gTt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265433	152265433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	81	406	0	ENST00000206249.3:c.886C>G	p.Leu296Val	p.L296V	ENST00000206249	NM_000125.3	296	Ctc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	260	619	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	34	288	1	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287446	46287446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	19	414	0	ENST00000334344.6:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000334344	NM_152641.2	1769	Cga/Tga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532438	63532438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	49	532	0	ENST00000307078.5:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000307078	NM_004655.3	714	cGg/cAg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939876	71939876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	80	759	0	ENST00000298229.2:c.503C>T	p.Ala168Val	p.A168V	ENST00000298229	NM_001567.3	168	gCt/gTt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343892	118343892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	90	491	0	ENST00000534358.1:c.2018C>T	p.Ala673Val	p.A673V	ENST00000534358	NM_005933.3	673	gCt/gTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246553	41246553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	57	767	1	ENST00000357654.3:c.995G>A	p.Arg332Gln	p.R332Q	ENST00000357654	NM_007294.3	332	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221666	36221666	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	45	723	0	ENST00000222270.7:c.5335C>T	p.Arg1779Ter	p.R1779*	ENST00000222270	NM_014727.1	1779	Cga/Tga																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1977089	1977089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	69	741	0	ENST00000382891.5:c.3583G>A	p.Ala1195Thr	p.A1195T	ENST00000382891	NM_133335.3	1195	Gcc/Acc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117866591	117866591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	19	563	0	ENST00000297338.2:c.1054G>T	p.Asp352Tyr	p.D352Y	ENST00000297338	NM_006265.2	352	Gat/Tat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933151	39933151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	342	649	0	ENST00000378444.4:c.1448C>T	p.Pro483Leu	p.P483L	ENST00000378444	NM_001123385.1	483	cCg/cTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440372	52440372	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	260	514	0	ENST00000460680.1:c.680G>C	p.Arg227Pro	p.R227P	ENST00000460680	NM_004656.3	227	cGc/cCc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949152	44949153	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG			P-0036482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	197	491	0	ENST00000377967.4:c.3714_3716dupTTG	p.Ala1238_Trp1239insCys	p.A1238_W1239insC	ENST00000377967	NM_021140.2	1238	gct/gcTTGt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274592	198274592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	216	505	0	ENST00000335508.6:c.806G>T	p.Gly269Val	p.G269V	ENST00000335508	NM_012433.2	269	gGa/gTa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436691	52436691	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0036482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	264	567	0	ENST00000460680.1:c.1984-1G>A		p.X662_splice	ENST00000460680	NM_004656.3	662																																																																															
BAP1	8314	MSKCC	GRCh37	3	52436810	52436810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	244	611	0	ENST00000460680.1:c.1968G>C	p.Lys656Asn	p.K656N	ENST00000460680	NM_004656.3	656	aaG/aaC																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437169	52437169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	265	452	0	ENST00000460680.1:c.1875G>C	p.Glu625Asp	p.E625D	ENST00000460680	NM_004656.3	625	gaG/gaC																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437246	52437246	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	342	607	0	ENST00000460680.1:c.1798G>C	p.Glu600Gln	p.E600Q	ENST00000460680	NM_004656.3	600	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	188	603	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0036485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	88	332	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	146	485	0	ENST00000304494.5:c.260G>C	p.Arg87Pro	p.R87P	ENST00000304494	NM_000077.4	87	cGg/cCg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971098	21971098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	146	485	0	ENST00000304494.5:c.260G>C	p.Arg87Pro	p.R87P	ENST00000304494	NM_000077.4	87	cGg/cCg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412029	63412029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	145	345	0	ENST00000330258.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000330258	NM_152424.3	380	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883212	37883212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	202	647	3	ENST00000269571.5:c.3115G>A	p.Ala1039Thr	p.A1039T	ENST00000269571		1039	Gct/Act																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023819	27023819	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	247	377	0	ENST00000324856.7:c.925C>T	p.Gln309Ter	p.Q309*	ENST00000324856	NM_006015.4	309	Cag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121197	11121197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	277	512	0	ENST00000344626.4:c.2264A>G	p.Lys755Arg	p.K755R	ENST00000344626	NM_003072.3	755	aAa/aGa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549823	187549823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	173	499	0	ENST00000441802.2:c.4418C>T	p.Thr1473Ile	p.T1473I	ENST00000441802	NM_005245.3	1473	aCa/aTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636721	8636721	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	91	258	0	ENST00000356435.5:c.188A>C	p.Lys63Thr	p.K63T	ENST00000356435		63	aAa/aCa																																																																														
TEK	7010	MSKCC	GRCh37	9	27212776	27212776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	220	665	0	ENST00000380036.4:c.2758C>A	p.Leu920Met	p.L920M	ENST00000380036	NM_000459.3	920	Ctg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0036486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	59	451	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	38	321	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0036488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	274	668	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643734	52643734	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs142097913		P-0036488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	181	736	0	ENST00000394830.3:c.2162T>C	p.Ile721Thr	p.I721T	ENST00000394830	NM_018313.4	721	aTt/aCt																																																																														
CIC	23152	MSKCC	GRCh37	19	42795354	42795354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	162	622	0	ENST00000575354.2:c.2434C>T	p.Gln812Ter	p.Q812*	ENST00000575354	NM_015125.3	812	Caa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499342	89499342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	135	361	0	ENST00000336596.2:c.2512G>C	p.Asp838His	p.D838H	ENST00000336596	NM_005233.5	838	Gat/Cat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230886	66230886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	75	349	0	ENST00000273854.3:c.2085A>T	p.Lys695Asn	p.K695N	ENST00000273854	NM_004439.5	695	aaA/aaT																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707579	176707579	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	182	570	0	ENST00000439151.2:c.5636T>G	p.Ile1879Ser	p.I1879S	ENST00000439151	NM_022455.4	1879	aTt/aGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	83	453	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11123788	11123788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	51	494	0	ENST00000344626.4:c.2438C>T	p.Ser813Leu	p.S813L	ENST00000344626	NM_003072.3	813	tCa/tTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589557	67589562	+	inframe_deletion	In_Frame_Del	DEL	TAATAT	TAATAT	-			P-0036532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	14	140	0	ENST00000274335.5:c.1321_1326del	p.Asn441_Ile442del	p.N441_I442del	ENST00000274335		440	gaTAATATt/gat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	53	506	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	40	309	0	ENST00000304494.5:c.188T>A	p.Leu63Gln	p.L63Q	ENST00000304494	NM_000077.4	63	cTg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	40	309	0	ENST00000304494.5:c.188T>A	p.Leu63Gln	p.L63Q	ENST00000304494	NM_000077.4	63	cTg/cAg																																																																														
POLE	5426	MSKCC	GRCh37	12	133233744	133233744	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	60	495	0	ENST00000320574.5:c.3560T>G	p.Phe1187Cys	p.F1187C	ENST00000320574	NM_006231.2	1187	tTc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578374	7578375	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	55	594	0	ENST00000269305.4:c.555dup	p.Asp186ArgfsTer23	p.D186Rfs*23	ENST00000269305	NM_001126112.2	185	-/C																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	143	451	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	47	223	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481882	56481882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	142	609	0	ENST00000267101.3:c.810C>G	p.Phe270Leu	p.F270L	ENST00000267101	NM_001982.3	270	ttC/ttG																																																																														
SDHA	6389	MSKCC	GRCh37	5	225669	225669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	145	687	1	ENST00000264932.6:c.448G>A	p.Val150Met	p.V150M	ENST00000264932	NM_004168.2	150	Gtg/Atg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711367	114711367	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	66	136	0	ENST00000543371.1:c.381+1G>C		p.X127_splice	ENST00000543371	NM_001198531.1	127																																																																															
TOP1	7150	MSKCC	GRCh37	20	39726924	39726924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	37	203	0	ENST00000361337.2:c.922T>C	p.Tyr308His	p.Y308H	ENST00000361337	NM_003286.2	308	Tat/Cat																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747836	41747836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	83	328	0	ENST00000226382.2:c.933C>A	p.Ser311Arg	p.S311R	ENST00000226382	NM_003924.3	311	agC/agA																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0036552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	27	286	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922364	178922364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	28	318	0	ENST00000263967.3:c.1133G>T	p.Cys378Phe	p.C378F	ENST00000263967	NM_006218.2	378	tGt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	35	571	0	ENST00000263967.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717715	89717716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1393832338		P-0036552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	75	375	0	ENST00000371953.3:c.741dup	p.Pro248ThrfsTer5	p.P248Tfs*5	ENST00000371953	NM_000314.4	247	tta/ttAa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082316	16082317	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0036552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	66	835	0	ENST00000281043.3:c.130_131delCCinsTT	p.Pro44Phe	p.P44F	ENST00000281043	NM_005378.4	44	CCc/TTc																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	143	321	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	206	621	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40979319	40979319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	170	533	1	ENST00000373198.4:c.1814C>T	p.Thr605Met	p.T605M	ENST00000373198	NM_133170.3	605	aCg/aTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42792016	42792017	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAA			P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	51	534	0	ENST00000575354.2:c.824_827dup	p.Ser277GlufsTer39	p.S277Efs*39	ENST00000575354	NM_015125.3	274	cga/cGAAAga																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31383490	31383490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	59	486	0	ENST00000328111.2:c.1287C>A	p.Ser429Arg	p.S429R	ENST00000328111	NM_006892.3	429	agC/agA																																																																														
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	33	407	1	ENST00000288319.7:c.1211C>A	p.Pro404Gln	p.P404Q	ENST00000288319	NM_182918.3	404	cCg/cAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151900135	151900171	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGCTCACTCCAGCCTGAAACAACAGTCACATTTAT	ACTGCTCACTCCAGCCTGAAACAACAGTCACATTTAT	-			P-0036553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	41	279	0	ENST00000262189.6:c.3962-22_3976del		p.X1321_splice	ENST00000262189	NM_170606.2	1321																																																																															
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018771-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			249	658	833	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0018771-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			204	36	333	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0018771-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			204	36	333	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120462032	120462032	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201996575		P-0018771-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			345	166	581	0	ENST00000256646.2:c.5684G>A	p.Arg1895His	p.R1895H	ENST00000256646	NM_024408.3	1895	cGt/cAt																																																																														
MSI1	4440	MSKCC	GRCh37	12	120783942	120783942	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018771-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			143	263	562	0	ENST00000257552.2:c.1043T>G	p.Leu348Arg	p.L348R	ENST00000257552	NM_002442.3	348	cTt/cGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437600	56437600	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018771-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			125	242	399	0	ENST00000407977.2:c.862A>T	p.Ile288Phe	p.I288F	ENST00000407977		288	Att/Ttt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876220	35876220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018771-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			376	196	474	0	ENST00000303115.3:c.1012C>A	p.Gln338Lys	p.Q338K	ENST00000303115	NM_002185.3	338	Cag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	53	333	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	27	459	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	238	683	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	96	469	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	46	350	4	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	75	390	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
WT1	7490	MSKCC	GRCh37	11	32417886	32417886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	36	498	2	ENST00000332351.3:c.1166G>A	p.Arg389His	p.R389H	ENST00000332351	NM_024426.4	389	cGc/cAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	142	795	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	140	510	5	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	78	548	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	79	681	1	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	82	429	1	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
ATRX	546	MSKCC	GRCh37	X	76938776	76938776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	90	668	1	ENST00000373344.5:c.1972C>T	p.Arg658Cys	p.R658C	ENST00000373344	NM_000489.3	658	Cgt/Tgt																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225408	26225408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	35	172	0	ENST00000360408.1:c.26G>A	p.Arg9His	p.R9H	ENST00000360408	NM_003532.2	9	cGt/cAt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120199	70120199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	106	597	0	ENST00000245479.2:c.1201C>T	p.Gln401Ter	p.Q401*	ENST00000245479	NM_000346.3	401	Cag/Tag																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656846	45656846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	96	576	0	ENST00000407780.3:c.310A>G	p.Thr104Ala	p.T104A	ENST00000407780	NM_001283052.1	104	Acc/Gcc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212259	5212259	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	86	633	0	ENST00000357368.4:c.4772C>T	p.Ala1591Val	p.A1591V	ENST00000357368	NM_002850.3	1591	gCc/gTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243963	5243963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	109	576	0	ENST00000357368.4:c.1519G>A	p.Val507Ile	p.V507I	ENST00000357368	NM_002850.3	507	Gtc/Atc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	76	401	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
AXIN1	8312	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	179	600	2	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																															
KDM5A	5927	MSKCC	GRCh37	12	432249	432249	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	65	337	0	ENST00000399788.2:c.2274del	p.Asp759IlefsTer2	p.D759Ifs*2	ENST00000399788	NM_001042603.1	758	aaA/aa																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428251	33428251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150134822		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	91	532	1	ENST00000335858.7:c.536G>A	p.Arg179His	p.R179H	ENST00000335858	NM_133629.2	179	cGc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70360679	70360680	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	18	168	0	ENST00000374080.3:c.6256_6258dup	p.Gln2086dup	p.Q2086dup	ENST00000374080		2086	cgg/cgGCAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237614	16237614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	51	408	0	ENST00000375759.3:c.1061G>A	p.Gly354Asp	p.G354D	ENST00000375759	NM_015001.2	354	gGc/gAc																																																																														
ATM	472	MSKCC	GRCh37	11	108115748	108115748	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	15	199	1	ENST00000278616.4:c.900del	p.Gly301ValfsTer19	p.G301Vfs*19	ENST00000278616	NM_000051.3	299	gAa/ga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246312	46246312	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	33	361	0	ENST00000334344.6:c.4406T>G	p.Val1469Gly	p.V1469G	ENST00000334344	NM_152641.2	1469	gTc/gGc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90630484	90630484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	90	575	0	ENST00000330062.3:c.827C>T	p.Thr276Ile	p.T276I	ENST00000330062	NM_002168.2	276	aCc/aTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89354977	89354977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	149	669	0	ENST00000301030.4:c.703G>A	p.Asp235Asn	p.D235N	ENST00000301030	NM_001256183.1	235	Gac/Aac																																																																														
AURKB	9212	MSKCC	GRCh37	17	8113500	8113500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	99	674	0	ENST00000585124.1:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000585124	NM_004217.3	15	Cag/Tag																																																																														
NF1	4763	MSKCC	GRCh37	17	29546030	29546030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	63	291	0	ENST00000358273.4:c.1535G>T	p.Arg512Ile	p.R512I	ENST00000358273	NM_001042492.2	512	aGa/aTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29664399	29664399	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	67	441	0	ENST00000358273.4:c.6441A>C	p.Gln2147His	p.Q2147H	ENST00000358273	NM_001042492.2	2147	caA/caC																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435108	56435108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	31	657	0	ENST00000407977.2:c.2029G>A	p.Ala677Thr	p.A677T	ENST00000407977		677	Gct/Act																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39550304	39550304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	31	219	0	ENST00000262039.4:c.415G>A	p.Gly139Arg	p.G139R	ENST00000262039	NM_002647.2	139	Ggg/Agg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2213574	2213576	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	127	761	0	ENST00000398665.3:c.1597_1599del	p.Leu533del	p.L533del	ENST00000398665	NM_032482.2	532	CTC/-																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10260574	10260575	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	72	552	0	ENST00000340748.4:c.2287_2288del	p.Val763LeufsTer6	p.V763Lfs*6	ENST00000340748		763	GTc/c																																																																														
BBC3	27113	MSKCC	GRCh37	19	47724985	47724985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	116	807	0	ENST00000449228.1:c.759C>A	p.Ser253Arg	p.S253R	ENST00000449228	NM_001127240.2	253	agC/agA																																																																														
BARD1	580	MSKCC	GRCh37	2	215645634	215645634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	60	620	0	ENST00000260947.4:c.964C>T	p.Arg322Cys	p.R322C	ENST00000260947	NM_000465.2	322	Cgt/Tgt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661341	227661341	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	103	675	0	ENST00000305123.5:c.2114delG	p.Gly705AlafsTer29	p.G705Afs*29	ENST00000305123	NM_005544.2	705	gGc/gc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662351	227662352	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	93	534	0	ENST00000305123.5:c.1103dup	p.Leu369AlafsTer28	p.L369Afs*28	ENST00000305123	NM_005544.2	368	ccg/ccCg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40747062	40747062	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	86	618	0	ENST00000373198.4:c.3020del	p.Asn1007ThrfsTer8	p.N1007Tfs*8	ENST00000373198	NM_133170.3	1007	aAc/ac																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526792	31526792	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	101	613	0	ENST00000344624.3:c.248del	p.Pro83HisfsTer25	p.P83Hfs*25	ENST00000344624		83	cCa/ca																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911164	29911164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	64	318	2	ENST00000376809.5:c.463C>A	p.Arg155Ser	p.R155S	ENST00000376809	NM_002116.7	155	Cgc/Agc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911183	29911183	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	31	147	0	ENST00000376809.5:c.482A>C	p.Asp161Ala	p.D161A	ENST00000376809	NM_002116.7	161	gAc/gCc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324534	31324534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	50	864	0	ENST00000412585.2:c.274A>G	p.Lys92Glu	p.K92E	ENST00000412585	NM_005514.6	92	Aag/Gag																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288359	33288359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	57	364	0	ENST00000374542.5:c.1049C>A	p.Pro350His	p.P350H	ENST00000374542	NM_001141970.1	350	cCt/cAt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969107	93969107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	46	325	0	ENST00000369303.4:c.1889C>T	p.Ala630Val	p.A630V	ENST00000369303	NM_004440.3	630	gCc/gTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55233129	55233129	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	68	435	0	ENST00000275493.2:c.1879G>T	p.Gly627Ter	p.G627*	ENST00000275493	NM_005228.3	627	Gga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273148	55273148	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	125	612	2	ENST00000275493.2:c.3471G>A	p.Trp1157Ter	p.W1157*	ENST00000275493	NM_005228.3	1157	tgG/tgA																																																																														
BRAF	673	MSKCC	GRCh37	7	140476752	140476752	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	58	441	0	ENST00000288602.6:c.1654A>C	p.Lys552Gln	p.K552Q	ENST00000288602	NM_004333.4	552	Aaa/Caa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873309	151873309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145953124		P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	43	340	1	ENST00000262189.6:c.9229C>T	p.Arg3077Cys	p.R3077C	ENST00000262189	NM_170606.2	3077	Cgt/Tgt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908835	101908835	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	24	569	0	ENST00000374994.4:c.1199A>G	p.Asp400Gly	p.D400G	ENST00000374994	NM_004612.2	400	gAc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	169	785	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	111	346	4	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																														
ALK	238	MSKCC	GRCh37	2	29416374	29416374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	179	960	4	ENST00000389048.3:c.4579C>T	p.Pro1527Ser	p.P1527S	ENST00000389048	NM_004304.4	1527	Cca/Tca																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289191	33289191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	103	695	2	ENST00000374542.5:c.361G>A	p.Ala121Thr	p.A121T	ENST00000374542	NM_001141970.1	121	Gcc/Acc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	279	491	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	28	473	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			177	131	378	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65305403	65305403	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	41	785	0	ENST00000342505.4:c.2725T>C	p.Ser909Pro	p.S909P	ENST00000342505	NM_002227.2	909	Tct/Cct																																																																														
NUF2	83540	MSKCC	GRCh37	1	163297333	163297333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	124	798	0	ENST00000271452.3:c.179G>T	p.Arg60Leu	p.R60L	ENST00000271452	NM_145697.2	60	cGa/cTa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211581	46211581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	56	514	0	ENST00000334344.6:c.547C>G	p.Leu183Val	p.L183V	ENST00000334344	NM_152641.2	183	Cta/Gta																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624812	9624812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			638	122	712	1	ENST00000353224.5:c.165C>A	p.Asp55Glu	p.D55E	ENST00000353224	NM_177990.2	55	gaC/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	175	778	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138176	64138176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	98	897	0	ENST00000334205.4:c.2099C>T	p.Ser700Leu	p.S700L	ENST00000334205	NM_003942.2	700	tCg/tTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	40	338	0	ENST00000288135.5:c.1676T>C	p.Val559Ala	p.V559A	ENST00000288135	NM_000222.2	559	gTt/gCt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187549752	187549752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	181	357	0	ENST00000441802.2:c.4489A>G	p.Arg1497Gly	p.R1497G	ENST00000441802	NM_005245.3	1497	Aga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	257	535	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																														
KIT	3815	MSKCC	GRCh37	4	55599320	55599320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	14	463	0	ENST00000288135.5:c.2446G>T	p.Asp816Tyr	p.D816Y	ENST00000288135	NM_000222.2	816	Gac/Tac																																																																														
TET2	54790	MSKCC	GRCh37	4	106156439	106156439	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	107	252	0	ENST00000380013.4:c.1342del	p.Glu448LysfsTer2	p.E448Kfs*2	ENST00000380013	NM_001127208.2	447	aGg/ag																																																																														
PGR	5241	MSKCC	GRCh37	11	100998386	100998386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	18	91	0	ENST00000325455.5:c.1416G>T	p.Gln472His	p.Q472H	ENST00000325455	NM_001202474.3	472	caG/caT																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216782	7216783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	96	338	0	ENST00000380728.2:c.640dup	p.Ser214PhefsTer47	p.S214Ffs*47	ENST00000380728		214	tcg/tTcg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39542515	39542515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	39	286	0	ENST00000262039.4:c.319G>A	p.Ala107Thr	p.A107T	ENST00000262039	NM_002647.2	107	Gcc/Acc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176666861	176666861	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	39	225	1	ENST00000439151.2:c.4297A>C	p.Lys1433Gln	p.K1433Q	ENST00000439151	NM_022455.4	1433	Aaa/Caa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399341	139399342	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0036052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	78	643	0	ENST00000277541.6:c.4799_4801dup	p.Leu1600dup	p.L1600dup	ENST00000277541	NM_017617.3	1600	cac/cTGCac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0036157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	49	459	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	32	697	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	24	547	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	53	663	0	ENST00000269305.4:c.713G>C	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	tGt/tCt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974737	21974838	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGC	CGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGC	-			P-0036158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	22	302	0	ENST00000304494.5:c.-12_90del		p.*4*	ENST00000304494	NM_000077.4	4																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974737	21974838	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGC	CGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGC	-			P-0036158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	22	302	0	ENST00000304494.5:c.-12_90del		p.*4*	ENST00000304494	NM_000077.4	4																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	40	425	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	53	537	0	ENST00000347630.2:c.304T>A	p.Phe102Ile	p.F102I	ENST00000347630	NM_001007230.1	102	Ttc/Atc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753681	42753681	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	56	745	0	ENST00000222329.4:c.583G>T	p.Glu195Ter	p.E195*	ENST00000222329	NM_006494.2	195	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	84	500	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692851	89692851	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	52	194	0	ENST00000371953.3:c.335T>G	p.Leu112Arg	p.L112R	ENST00000371953	NM_000314.4	112	cTa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	132	248	0				ENST00000310581	NM_198253.2																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139402517	139402517	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	489	835	0	ENST00000277541.6:c.3400C>T	p.Gln1134Ter	p.Q1134*	ENST00000277541	NM_017617.3	1134	Cag/Tag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93974318	93974318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	47	424	0	ENST00000369303.4:c.1736G>A	p.Gly579Glu	p.G579E	ENST00000369303	NM_004440.3	579	gGg/gAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187519130	187519130	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	246	443	0	ENST00000441802.2:c.12253C>T	p.Gln4085Ter	p.Q4085*	ENST00000441802	NM_005245.3	4085	Cag/Tag																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217255	66217255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	98	456	0	ENST00000273854.3:c.2360G>T	p.Gly787Val	p.G787V	ENST00000273854	NM_004439.5	787	gGa/gTa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11210282	11210282	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	139	537	0	ENST00000361445.4:c.4471G>T	p.Gly1491Cys	p.G1491C	ENST00000361445	NM_004958.3	1491	Ggt/Tgt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276739	115276739	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	79	359	0	ENST00000438362.2:c.721-1G>T		p.X241_splice	ENST00000438362	NM_001242891.1	241																																																																															
VTCN1	79679	MSKCC	GRCh37	1	117699241	117699241	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	108	563	0	ENST00000369458.3:c.400A>T	p.Thr134Ser	p.T134S	ENST00000369458	NM_024626.3	134	Act/Tct																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165779	118165779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	118	550	1	ENST00000369448.3:c.289G>T	p.Val97Leu	p.V97L	ENST00000369448	NM_017709.3	97	Gtg/Ttg																																																																														
NUF2	83540	MSKCC	GRCh37	1	163307809	163307809	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	36	309	0	ENST00000271452.3:c.436-1G>T		p.X146_splice	ENST00000271452	NM_145697.2	146																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49445651	49445652	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	179	899	0	ENST00000301067.7:c.1814_1815del	p.Glu605ValfsTer8	p.E605Vfs*8	ENST00000301067	NM_003482.3	605	gAG/g																																																																														
MGA	23269	MSKCC	GRCh37	15	42058788	42058788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	85	396	0	ENST00000219905.7:c.8508A>C	p.Gln2836His	p.Q2836H	ENST00000219905	NM_001164273.1	2836	caA/caC																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472621	88472621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	110	466	0	ENST00000360948.2:c.1934G>T	p.Arg645Leu	p.R645L	ENST00000360948	NM_001012338.2	645	cGc/cTc																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647725	2647725	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	146	569	0	ENST00000342085.4:c.1628G>A	p.Trp543Ter	p.W543*	ENST00000342085	NM_002613.4	543	tGg/tAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858605	9858606	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	120	659	0	ENST00000330684.3:c.2795_2796delinsAT	p.Met932Asn	p.M932N	ENST00000330684	NM_001134407.1	932	aTG/aAT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351026	89351027	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	202	915	1	ENST00000301030.4:c.1923_1924delinsTT	p.Lys641_Glu642delinsAsnTer	p.K641_E642delinsN*	ENST00000301030	NM_001256183.1	641	aaGGag/aaTTag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533023	63533023	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	69	673	0	ENST00000307078.5:c.1871T>G	p.Leu624Arg	p.L624R	ENST00000307078	NM_004655.3	624	cTg/cGg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353754	15353754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	108	700	1	ENST00000263377.2:c.3126C>A	p.His1042Gln	p.H1042Q	ENST00000263377	NM_058243.2	1042	caC/caA																																																																														
POLD1	5424	MSKCC	GRCh37	19	50902205	50902205	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	77	789	1	ENST00000440232.2:c.97C>T	p.Gln33Ter	p.Q33*	ENST00000440232	NM_002691.3	33	Caa/Taa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624898	9624898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	149	530	1	ENST00000353224.5:c.79C>T	p.Pro27Ser	p.P27S	ENST00000353224	NM_177990.2	27	Cca/Tca																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509109	66509109	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	61	343	0	ENST00000273854.3:c.218T>A	p.Leu73Gln	p.L73Q	ENST00000273854	NM_004439.5	73	cTg/cAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69002870	69002870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	112	417	1	ENST00000288368.4:c.2170G>A	p.Gly724Arg	p.G724R	ENST00000288368	NM_024870.2	724	Gga/Aga																																																																														
ABL1	25	MSKCC	GRCh37	9	133759411	133759412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	379	682	0	ENST00000318560.5:c.1739dup	p.Glu581GlyfsTer6	p.E581Gfs*6	ENST00000318560	NM_005157.4	578	-/C																																																																														
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	144	524	1	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	209	407	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	59	301	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	269	607	1	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
UPF1	5976	MSKCC	GRCh37	19	18967059	18967059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	160	747	0	ENST00000262803.5:c.1774G>A	p.Glu592Lys	p.E592K	ENST00000262803	NM_002911.3	592	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118376920	118376920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	233	459	1	ENST00000534358.1:c.10313C>T	p.Thr3438Met	p.T3438M	ENST00000534358	NM_005933.3	3438	aCg/aTg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090632	71090632	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	236	614	0	ENST00000318789.4:c.716A>G	p.His239Arg	p.H239R	ENST00000318789	NM_032682.5	239	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	433	672	1	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	79	289	3	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445046	49445046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	275	508	5	ENST00000301067.7:c.2420C>T	p.Ser807Phe	p.S807F	ENST00000301067	NM_003482.3	807	tCc/tTc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78727865	78727865	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	399	666	1	ENST00000306801.3:c.710T>G	p.Met237Arg	p.M237R	ENST00000306801	NM_020761.2	237	aTg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0036176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	225	892	5	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140434522	140434522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	194	474	0	ENST00000288602.6:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000288602	NM_004333.4	726	Cgc/Tgc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0036178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	263	350	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023168	27023184	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGGCCCGGCGCGGA	GGCGGGCCCGGCGCGGA	-			P-0036178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	213	66	0	ENST00000324856.7:c.275_291del	p.Gly92AlafsTer13	p.G92Afs*13	ENST00000324856	NM_006015.4	92	GGCGGGCCCGGCGCGGAg/g																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206653830	206653830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	269	655	0	ENST00000367120.3:c.1381G>T	p.Ala461Ser	p.A461S	ENST00000367120	NM_014002.3	461	Gca/Tca																																																																														
BCL6	604	MSKCC	GRCh37	3	187444665	187444665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	259	441	0	ENST00000232014.4:c.1562A>G	p.Asn521Ser	p.N521S	ENST00000232014	NM_001130845.1	521	aAt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	177	470	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	114	318	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2984024	2984024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	125	583	1	ENST00000396946.4:c.506C>T	p.Thr169Met	p.T169M	ENST00000396946	NM_032415.4	169	aCg/aTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411071	63411071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	247	636	0	ENST00000330258.3:c.2096G>A	p.Arg699His	p.R699H	ENST00000330258	NM_152424.3	699	cGt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874751	151874751	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149388680		P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	154	393	0	ENST00000262189.6:c.7787G>A	p.Arg2596Gln	p.R2596Q	ENST00000262189	NM_170606.2	2596	cGg/cAg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114905777	114905777	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	229	475	0	ENST00000543371.1:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000543371	NM_001198531.1	266	Caa/Taa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243378	46243378	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	110	283	0	ENST00000334344.6:c.1731T>A	p.Asn577Lys	p.N577K	ENST00000334344	NM_152641.2	577	aaT/aaA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435148	49435148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	173	464	0	ENST00000301067.7:c.6405G>T	p.Leu2135Phe	p.L2135F	ENST00000301067	NM_003482.3	2135	ttG/ttT																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46252684	46252684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	67	309	0	ENST00000371998.3:c.113G>A	p.Arg38Gln	p.R38Q	ENST00000371998		38	cGg/cAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2972215	2972215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	231	527	1	ENST00000396946.4:c.1524G>T	p.Gln508His	p.Q508H	ENST00000396946	NM_032415.4	508	caG/caT																																																																														
HGF	3082	MSKCC	GRCh37	7	81355280	81355280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	76	409	1	ENST00000222390.5:c.1094G>A	p.Cys365Tyr	p.C365Y	ENST00000222390	NM_000601.4	365	tGt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	198	674	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0036324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	381	670	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0036324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	87	260	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	90	202	0	ENST00000257430.4:c.3904delC	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120291	70120292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	440	934	0	ENST00000245479.2:c.1294dup	p.Tyr432LeufsTer146	p.Y432Lfs*146	ENST00000245479	NM_000346.3	431	-/T																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911491	114911491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	79	172	0	ENST00000543371.1:c.1009C>T	p.Gln337Ter	p.Q337*	ENST00000543371	NM_001198531.1	337	Cag/Tag																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5534888	5534888	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	215	400	0	ENST00000397747.3:c.199T>C	p.Ser67Pro	p.S67P	ENST00000397747	NM_025239.3	67	Tcc/Ccc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69012029	69012029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1393	134	640	0	ENST00000288368.4:c.2666G>A	p.Cys889Tyr	p.C889Y	ENST00000288368	NM_024870.2	889	tGc/tAc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650753	48650753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	245	643	0	ENST00000376670.3:c.622G>A	p.Gly208Arg	p.G208R	ENST00000376670	NM_002049.3	208	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	358	721	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628443	187628443	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	114	817	0	ENST00000441802.2:c.2539A>G	p.Thr847Ala	p.T847A	ENST00000441802	NM_005245.3	847	Aca/Gca																																																																														
RAD52	5893	MSKCC	GRCh37	12	1023104	1023104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	154	641	0	ENST00000358495.3:c.1151G>A	p.Gly384Glu	p.G384E	ENST00000358495	NM_134424.2	384	gGa/gAa																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774194	56774194	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	106	432	0	ENST00000337432.4:c.545T>G	p.Leu182Arg	p.L182R	ENST00000337432	NM_058216.2	182	cTt/cGt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39637853	39637853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	106	372	0	ENST00000262039.4:c.2270T>A	p.Leu757His	p.L757H	ENST00000262039	NM_002647.2	757	cTc/cAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349705	15349705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	151	707	1	ENST00000263377.2:c.3869G>A	p.Arg1290His	p.R1290H	ENST00000263377	NM_058243.2	1290	cGc/cAc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273288	198273288	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	58	421	0	ENST00000335508.6:c.922A>C	p.Ser308Arg	p.S308R	ENST00000335508	NM_012433.2	308	Agt/Cgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542858	187542858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	34	372	0	ENST00000441802.2:c.4882A>G	p.Ser1628Gly	p.S1628G	ENST00000441802	NM_005245.3	1628	Agt/Ggt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35857127	35857127	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	97	338	0	ENST00000303115.3:c.48A>C	p.Gln16His	p.Q16H	ENST00000303115	NM_002185.3	16	caA/caC																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502104	157502104	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0036326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	32	365	0	ENST00000346085.5:c.3137A>C	p.Lys1046Thr	p.K1046T	ENST00000346085	NM_020732.3	1046	aAg/aCg																																																																														
MYC	4609	MSKCC	GRCh37	8	128751067	128751067	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	94	497	0	ENST00000377970.2:c.604G>C	p.Glu202Gln	p.E202Q	ENST00000377970	NM_002467.4	202	Gag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	107	542	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181402	38181402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	38	433	0	ENST00000396334.3:c.415G>A	p.Glu139Lys	p.E139K	ENST00000396334	NM_002468.4	139	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	92	738	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	47	572	0	ENST00000245479.2:c.791G>A	p.Arg264Lys	p.R264K	ENST00000245479	NM_000346.3	264	aGa/aAa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190894	185190894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	56	688	0	ENST00000265026.3:c.1775G>A	p.Arg592Gln	p.R592Q	ENST00000265026	NM_004721.4	592	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521385	187521385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	37	551	1	ENST00000441802.2:c.11770C>T	p.Arg3924Cys	p.R3924C	ENST00000441802	NM_005245.3	3924	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874893	151874893	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	32	465	0	ENST00000262189.6:c.7645C>T	p.Gln2549Ter	p.Q2549*	ENST00000262189	NM_170606.2	2549	Cag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118368699	118368702	+	frameshift_variant	Frame_Shift_Del	DEL	AATT	AATT	-			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	78	555	0	ENST00000534358.1:c.5713_5716del	p.Asn1905ValfsTer16	p.N1905Vfs*16	ENST00000534358	NM_005933.3	1905	AATTgt/gt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18762498	18762498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	47	429	1	ENST00000266497.5:c.3994G>C	p.Val1332Leu	p.V1332L	ENST00000266497		1332	Gtg/Ctg																																																																														
NF1	4763	MSKCC	GRCh37	17	29585424	29585424	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	100	658	0	ENST00000358273.4:c.4236A>T	p.Arg1412Ser	p.R1412S	ENST00000358273	NM_001042492.2	1412	agA/agT																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643389	52643389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	68	548	0	ENST00000394830.3:c.2507G>T	p.Arg836Leu	p.R836L	ENST00000394830	NM_018313.4	836	cGg/cTg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0036328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	192	630	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	477	610	0	ENST00000269305.4:c.636delT	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188404	32188404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	133	487	0	ENST00000375023.3:c.937G>A	p.Glu313Lys	p.E313K	ENST00000375023	NM_004557.3	313	Gaa/Aaa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43766936	43766936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	50	187	0	ENST00000382044.4:c.1115C>T	p.Pro372Leu	p.P372L	ENST00000382044	NM_001141980.1	372	cCt/cTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28601264	28601264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	138	425	0	ENST00000241453.7:c.2168T>C	p.Phe723Ser	p.F723S	ENST00000241453	NM_004119.2	723	tTc/tCc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727130	40727130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	159	505	0	ENST00000373198.4:c.3834C>A	p.Asp1278Glu	p.D1278E	ENST00000373198	NM_133170.3	1278	gaC/gaA																																																																														
TAP1	6890	MSKCC	GRCh37	6	32819916	32819916	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	519	661	0	ENST00000354258.4:c.994G>C	p.Glu332Gln	p.E332Q	ENST00000354258	NM_000593.5	332	Gag/Cag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69050669	69050669	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0036331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	344	475	0	ENST00000288368.4:c.4004T>G	p.Leu1335Ter	p.L1335*	ENST00000288368	NM_024870.2	1335	tTa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	140	710	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221975	1221975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	74	679	0	ENST00000326873.7:c.890G>A	p.Arg297Lys	p.R297K	ENST00000326873	NM_000455.4	297	aGg/aAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76776364	76776364	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	76	256	1	ENST00000373344.5:c.7102C>T	p.Gln2368Ter	p.Q2368*	ENST00000373344	NM_000489.3	2368	Caa/Taa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131939630	131939630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	31	221	0	ENST00000265335.6:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000265335		806	Gaa/Aaa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782404	9782405	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	47	750	1	ENST00000377346.4:c.2337_2338delinsAT	p.Asn780Tyr	p.N780Y	ENST00000377346	NM_005026.3	779	aaGAac/aaATac																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699313	117699313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	85	583	0	ENST00000369458.3:c.328G>T	p.Val110Phe	p.V110F	ENST00000369458	NM_024626.3	110	Gtt/Ttt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590636	95590636	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	67	389	0	ENST00000343455.3:c.1273G>T	p.Glu425Ter	p.E425*	ENST00000343455	NM_177438.2	425	Gaa/Taa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37672036	37672036	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	38	503	0	ENST00000447079.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000447079	NM_015083.1	941	Gaa/Taa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467116	25467116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	44	598	0	ENST00000264709.3:c.1759G>T	p.Gly587Trp	p.G587W	ENST00000264709	NM_175629.2	587	Ggg/Tgg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727189	40727189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	33	479	0	ENST00000373198.4:c.3775C>T	p.His1259Tyr	p.H1259Y	ENST00000373198	NM_133170.3	1259	Cac/Tac																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206141	36206738	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCCCATGGGCTGGGGGGACCTGCATTCTCTATTGATTTGCAAATAACACCCTTGATGTGATGACATCCATACATTTCAACTATTTCTTAATAATAAAAAAACACTAGATACAAAACCCACAAATAATCTGGCAATAGCGAGAACTTGAAACATCCCATCTTCACTTTGCTTGACGTGTGTGTGTGTGTGTGTCTGCGTGTGTGTCTTCAAGCCTAATGGGTAGGTAAAAAAATAGCATAGCCAAAGCTAACTCTTAAAAAATTCAAGAGAGCTATCTATCCAATATGGATATCCATACCCAGAGCTCCTCGTATCCTCTGTAGCAGTGCTTTTCCTTGTGGGGATCTGGTTACAATGCAGATCTGACTCGGTGGGTCTGGGGTGGGTGGGGCCCAAGACTCTGCATTTCCAACAGCTCCCAGGTGGTGCTGTTGGTTCGAGGCCTTTCTCTGAGCATCAAGGGGAAACCCCAGTTGGTCTGGGAAGGTGTGTGCACATGGGGGCCAGTTGTGGGTGGTGGCCCAGGTGCAGGAGAGGCGGGCAGTGGGCTCCATCTGGTACTTACCCTGCATCTGACTCTGAGGCTGAGGGTTAAAG	GCCCCATGGGCTGGGGGGACCTGCATTCTCTATTGATTTGCAAATAACACCCTTGATGTGATGACATCCATACATTTCAACTATTTCTTAATAATAAAAAAACACTAGATACAAAACCCACAAATAATCTGGCAATAGCGAGAACTTGAAACATCCCATCTTCACTTTGCTTGACGTGTGTGTGTGTGTGTGTCTGCGTGTGTGTCTTCAAGCCTAATGGGTAGGTAAAAAAATAGCATAGCCAAAGCTAACTCTTAAAAAATTCAAGAGAGCTATCTATCCAATATGGATATCCATACCCAGAGCTCCTCGTATCCTCTGTAGCAGTGCTTTTCCTTGTGGGGATCTGGTTACAATGCAGATCTGACTCGGTGGGTCTGGGGTGGGTGGGGCCCAAGACTCTGCATTTCCAACAGCTCCCAGGTGGTGCTGTTGGTTCGAGGCCTTTCTCTGAGCATCAAGGGGAAACCCCAGTTGGTCTGGGAAGGTGTGTGCACATGGGGGCCAGTTGTGGGTGGTGGCCCAGGTGCAGGAGAGGCGGGCAGTGGGCTCCATCTGGTACTTACCCTGCATCTGACTCTGAGGCTGAGGGTTAAAG	-			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	10	17	0	ENST00000300305.3:c.774_805+566del		p.X258_splice	ENST00000300305		258																																																																															
KIT	3815	MSKCC	GRCh37	4	55602737	55602737	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	92	511	0	ENST00000288135.5:c.2558G>C	p.Trp853Ser	p.W853S	ENST00000288135	NM_000222.2	853	tGg/tCg																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158469	26158469	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	114	654	0	ENST00000289316.2:c.72G>C	p.Lys24Asn	p.K24N	ENST00000289316	NM_138720.2	24	aaG/aaC																																																																														
SMO	6608	MSKCC	GRCh37	7	128846362	128846362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	60	710	1	ENST00000249373.3:c.1198C>A	p.Arg400Ser	p.R400S	ENST00000249373	NM_005631.4	400	Cgt/Agt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	137	363	1	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	174	446	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
MPL	4352	MSKCC	GRCh37	1	43812532	43812532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	174	438	0	ENST00000372470.3:c.1235A>G	p.His412Arg	p.H412R	ENST00000372470	NM_005373.2	412	cAc/cGc																																																																														
JUN	3725	MSKCC	GRCh37	1	59248166	59248166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	36	76	0	ENST00000371222.2:c.577G>A	p.Ala193Thr	p.A193T	ENST00000371222	NM_002228.3	193	Gcc/Acc																																																																														
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	197	578	1	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																														
RET	5979	MSKCC	GRCh37	10	43609122	43609122	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	256	619	0	ENST00000355710.3:c.1878G>T	p.Gln626His	p.Q626H	ENST00000355710	NM_020975.4	626	caG/caT																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342917	118342917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	107	251	0	ENST00000534358.1:c.1043T>C	p.Val348Ala	p.V348A	ENST00000534358	NM_005933.3	348	gTc/gCc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343502	118343502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	167	356	0	ENST00000534358.1:c.1628C>T	p.Thr543Met	p.T543M	ENST00000534358	NM_005933.3	543	aCg/aTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	245	631	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118367017	118367017	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	207	453	0	ENST00000534358.1:c.5603delC	p.Pro1868GlnfsTer3	p.P1868Qfs*3	ENST00000534358	NM_005933.3	1867	Ccc/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433394	49433394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	424	661	0	ENST00000301067.7:c.8053C>T	p.Arg2685Ter	p.R2685*	ENST00000301067	NM_003482.3	2685	Cga/Tga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	512	658	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112250	115112250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	86	186	0	ENST00000257566.3:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000257566	NM_016569.3	497	cCc/cTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008324	29008324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	131	367	0	ENST00000282397.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000282397	NM_002019.4	183	Cgc/Tgc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041210	29041210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	250	686	1	ENST00000282397.4:c.218G>T	p.Arg73Met	p.R73M	ENST00000282397	NM_002019.4	73	aGg/aTg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528185	103528185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	118	240	1	ENST00000355739.4:c.3493G>A	p.Ala1165Thr	p.A1165T	ENST00000355739	NM_000123.3	1165	Gcc/Acc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435333	110435333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	119	307	0	ENST00000375856.3:c.3068C>T	p.Ala1023Val	p.A1023V	ENST00000375856	NM_003749.2	1023	gCg/gTg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436297	110436302	+	inframe_deletion	In_Frame_Del	DEL	CGGCGG	CGGCGG	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	81	176	0	ENST00000375856.3:c.2099_2104del	p.Ala700_Ala701del	p.A700_A701del	ENST00000375856	NM_003749.2	700	gCCGCCGtg/gtg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437436	110437436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	271	429	0	ENST00000375856.3:c.965C>T	p.Ala322Val	p.A322V	ENST00000375856	NM_003749.2	322	gCg/gTg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609984	81609984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	108	268	0	ENST00000298171.2:c.1582C>T	p.Arg528Cys	p.R528C	ENST00000298171	NM_000369.2	528	Cgc/Tgc																																																																														
RAD51	5888	MSKCC	GRCh37	15	41011090	41011090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	207	491	0	ENST00000267868.3:c.523G>A	p.Ala175Thr	p.A175T	ENST00000267868	NM_002875.4	175	Gct/Act																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712824	43712824	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	241	671	0	ENST00000382044.4:c.4360C>T	p.Arg1454Ter	p.R1454*	ENST00000382044	NM_001141980.1	1454	Cga/Tga																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	152	438	2	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354374	354374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	259	634	2	ENST00000262320.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000262320	NM_003502.3	395	cGc/cAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786719	3786719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	287	722	0	ENST00000262367.5:c.4492C>T	p.Arg1498Ter	p.R1498*	ENST00000262367	NM_004380.2	1498	Cga/Tga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	130	320	3	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	100	400	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	40	267	1	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961790	15961790	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762874617		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	177	470	0	ENST00000268712.3:c.6005C>T	p.Ala2002Val	p.A2002V	ENST00000268712	NM_006311.3	2002	gCg/gTg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	263	590	2	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244970	41244970	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	293	783	0	ENST00000357654.3:c.2578A>G	p.Thr860Ala	p.T860A	ENST00000357654	NM_007294.3	860	Aca/Gca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	126	376	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	192	576	0	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	196	443	0	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740726	58740726	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	228	496	0	ENST00000305921.3:c.1631G>C	p.Gly544Ala	p.G544A	ENST00000305921	NM_003620.3	544	gGc/gCc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59820415	59820415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	147	393	0	ENST00000259008.2:c.2338A>G	p.Ile780Val	p.I780V	ENST00000259008	NM_032043.2	780	Ata/Gta																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732385	74732385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	115	324	0	ENST00000359995.5:c.524C>T	p.Ser175Leu	p.S175L	ENST00000359995	NM_001195427.1	175	tCg/tTg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612320	1612320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	314	781	0	ENST00000344749.5:c.1699C>T	p.Arg567Trp	p.R567W	ENST00000344749	NM_001136139.2	567	Cgg/Tgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244243	5244243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	227	592	0	ENST00000357368.4:c.1239delC	p.Ser414AlafsTer30	p.S414Afs*30	ENST00000357368	NM_002850.3	413	ccC/cc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	153	516	4	ENST00000263377.2:c.766delC	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223175	36223175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	271	896	2	ENST00000222270.7:c.5730del	p.Arg1911AspfsTer23	p.R1911Dfs*23	ENST00000222270	NM_014727.1	1909	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224111	36224111	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	255	740	2	ENST00000222270.7:c.6666del	p.Thr2223ProfsTer38	p.T2223Pfs*38	ENST00000222270	NM_014727.1	2221	Ccc/cc																																																																														
AXL	558	MSKCC	GRCh37	19	41745212	41745212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	146	488	0	ENST00000301178.4:c.1278G>T	p.Trp426Cys	p.W426C	ENST00000301178	NM_021913.4	426	tgG/tgT																																																																														
CIC	23152	MSKCC	GRCh37	19	42797933	42797935	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	256	761	0	ENST00000575354.2:c.3988_3990del	p.Lys1330del	p.K1330del	ENST00000575354	NM_015125.3	1329	AAG/-																																																																														
ALK	238	MSKCC	GRCh37	2	29445400	29445400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	249	727	0	ENST00000389048.3:c.3433del	p.Leu1145CysfsTer5	p.L1145Cfs*5	ENST00000389048	NM_004304.4	1145	Ctg/tg																																																																														
ALK	238	MSKCC	GRCh37	2	30142910	30142910	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141093002		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	260	705	1	ENST00000389048.3:c.616G>A	p.Ala206Thr	p.A206T	ENST00000389048	NM_004304.4	206	Gcg/Acg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47705459	47705459	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	126	331	0	ENST00000233146.2:c.2260del	p.Thr754LeufsTer9	p.T754Lfs*9	ENST00000233146	NM_000251.2	753	ggA/gg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	230	424	16	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99172161	99172161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	181	448	0	ENST00000074304.5:c.1727C>T	p.Pro576Leu	p.P576L	ENST00000074304	NM_001134224.1	576	cCg/cTg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128028933	128028933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	188	580	0	ENST00000285398.2:c.1924C>T	p.Arg642Trp	p.R642W	ENST00000285398	NM_000122.1	642	Cgg/Tgg																																																																														
CASP8	841	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	206	579	1	ENST00000358485.4:c.1245delT	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021461	31021461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	160	427	0	ENST00000375687.4:c.1460C>T	p.Ala487Val	p.A487V	ENST00000375687	NM_015338.5	487	gCt/gTt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31372649	31372649	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200902224		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	179	451	0	ENST00000328111.2:c.290G>A	p.Arg97His	p.R97H	ENST00000328111	NM_006892.3	97	cGt/cAt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31376726	31376726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	195	474	0	ENST00000328111.2:c.721G>A	p.Ala241Thr	p.A241T	ENST00000328111	NM_006892.3	241	Gcc/Acc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39744972	39744972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	157	395	0	ENST00000361337.2:c.1762G>A	p.Val588Ile	p.V588I	ENST00000361337	NM_003286.2	588	Gta/Ata																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877391	40877391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	208	578	0	ENST00000373198.4:c.2305G>A	p.Val769Met	p.V769M	ENST00000373198	NM_133170.3	769	Gtg/Atg																																																																														
RAC2	5880	MSKCC	GRCh37	22	37637694	37637694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	251	578	0	ENST00000249071.6:c.40G>A	p.Val14Met	p.V14M	ENST00000249071	NM_002872.4	14	Gtg/Atg																																																																														
EP300	2033	MSKCC	GRCh37	22	41573155	41573155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	246	614	0	ENST00000263253.7:c.5440C>T	p.Arg1814Trp	p.R1814W	ENST00000263253	NM_001429.3	1814	Cgg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	230	485	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932636	49932636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	208	596	0	ENST00000296474.3:c.3235C>T	p.Arg1079Trp	p.R1079W	ENST00000296474	NM_002447.2	1079	Cgg/Tgg																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1959681	1959681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	82	225	1	ENST00000382891.5:c.2903G>A	p.Arg968His	p.R968H	ENST00000382891	NM_133335.3	968	cGt/cAt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356229	66356229	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	240	600	0	ENST00000273854.3:c.1268delA	p.Asn423ThrfsTer5	p.N423Tfs*5	ENST00000273854	NM_004439.5	423	aAc/ac																																																																														
SDHA	6389	MSKCC	GRCh37	5	224548	224548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	205	492	0	ENST00000264932.6:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000264932	NM_004168.2	75	cGa/cAa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	439	564	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112170861	112170861	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	160	432	0	ENST00000257430.4:c.1957A>G	p.Arg653Gly	p.R653G	ENST00000257430	NM_000038.5	653	Agg/Ggg																																																																														
APC	324	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	105	286	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931451	131931452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	72	316	1	ENST00000265335.6:c.2164_2165dup	p.Glu723ArgfsTer14	p.E723Rfs*14	ENST00000265335		719	cta/ctAAa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	65	170	2	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459840	149459840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	208	631	2	ENST00000286301.3:c.367G>A	p.Ala123Thr	p.A123T	ENST00000286301	NM_005211.3	123	Gca/Aca																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	138	253	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839847	27839847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	204	503	0	ENST00000328488.2:c.247C>A	p.Leu83Met	p.L83M	ENST00000328488	NM_003533.2	83	Ctg/Atg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166206	32166206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	279	640	0	ENST00000375023.3:c.4748G>A	p.Arg1583His	p.R1583H	ENST00000375023	NM_004557.3	1583	cGt/cAt																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43742094	43742094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	280	720	2	ENST00000523873.1:c.83C>A	p.Pro28His	p.P28H	ENST00000523873		28	cCc/cAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631301	117631301	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199882276		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	164	441	0	ENST00000368508.3:c.6377G>A	p.Arg2126Gln	p.R2126Q	ENST00000368508	NM_002944.2	2126	cGg/cAg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718162	117718162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	253	568	0	ENST00000368508.3:c.695T>C	p.Leu232Pro	p.L232P	ENST00000368508	NM_002944.2	232	cTg/cCg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152201873	152201873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	126	341	0	ENST00000206249.3:c.727C>T	p.Arg243Cys	p.R243C	ENST00000206249	NM_000125.3	243	Cgt/Tgt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522598	157522598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	194	507	0	ENST00000346085.5:c.4870C>T	p.Arg1624Ter	p.R1624*	ENST00000346085	NM_020732.3	1624	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987423	2987423	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	110	444	0	ENST00000396946.4:c.8-2del		p.X3_splice	ENST00000396946	NM_032415.4	3																																																																															
WHSC1L1	54904	MSKCC	GRCh37	8	38205092	38205092	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	154	736	7	ENST00000317025.8:c.598del	p.Ser200AlafsTer20	p.S200Afs*20	ENST00000317025	NM_023034.1	200	Agc/gc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	189	561	1	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499823	8499823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	162	404	1	ENST00000356435.5:c.2146C>T	p.Arg716Cys	p.R716C	ENST00000356435		716	Cgc/Tgc																																																																														
TEK	7010	MSKCC	GRCh37	9	27213564	27213564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	180	531	0	ENST00000380036.4:c.2960G>A	p.Arg987Gln	p.R987Q	ENST00000380036	NM_000459.3	987	cGa/cAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223563	53223563	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	180	257	0	ENST00000375401.3:c.3796C>T	p.Gln1266Ter	p.Q1266*	ENST00000375401	NM_004187.3	1266	Cag/Tag																																																																														
BTK	695	MSKCC	GRCh37	X	100608310	100608310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	247	343	2	ENST00000308731.7:c.1780G>T	p.Gly594Trp	p.G594W	ENST00000308731	NM_000061.2	594	Ggg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0036346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	218	906	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	53	419	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	101	384	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	98	314	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115117361	115117368	+	frameshift_variant	Frame_Shift_Del	DEL	GTATGTCC	GTATGTCC	-			P-0036347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	33	380	0	ENST00000257566.3:c.806_813del	p.Arg269LeufsTer6	p.R269Lfs*6	ENST00000257566	NM_016569.3	269	cGGACATAC/c																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10246826	10246826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	50	720	1	ENST00000340748.4:c.4579G>A	p.Val1527Ile	p.V1527I	ENST00000340748		1527	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	350	821	1	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085768	16085768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	121	470	0	ENST00000281043.3:c.944C>T	p.Ser315Phe	p.S315F	ENST00000281043	NM_005378.4	315	tCc/tTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416878	416878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	135	419	0	ENST00000399788.2:c.3672G>C	p.Glu1224Asp	p.E1224D	ENST00000399788	NM_001042603.1	1224	gaG/gaC																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900388	3900388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	153	712	0	ENST00000262367.5:c.708C>G	p.Ser236Arg	p.S236R	ENST00000262367	NM_004380.2	236	agC/agG																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965080	15965080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	65	451	0	ENST00000268712.3:c.5516C>G	p.Thr1839Arg	p.T1839R	ENST00000268712	NM_006311.3	1839	aCa/aGa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223227	41223227	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	273	516	0	ENST00000357654.3:c.4704del	p.Ser1569AlafsTer32	p.S1569Afs*32	ENST00000357654	NM_007294.3	1568	atC/at																																																																														
KIT	3815	MSKCC	GRCh37	4	55602713	55602713	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	69	453	0	ENST00000288135.5:c.2534T>C	p.Val845Ala	p.V845A	ENST00000288135	NM_000222.2	845	gTa/gCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875085	151875085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	38	126	0	ENST00000262189.6:c.7453C>G	p.Pro2485Ala	p.P2485A	ENST00000262189	NM_170606.2	2485	Cca/Gca																																																																														
ABL1	25	MSKCC	GRCh37	9	133760122	133760122	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	56	551	1	ENST00000318560.5:c.2448del	p.Lys816AsnfsTer27	p.K816Nfs*27	ENST00000318560	NM_005157.4	815	ccA/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	167	869	1	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720828	89720828	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0036352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	20	395	0	ENST00000371953.3:c.979A>T	p.Lys327Ter	p.K327*	ENST00000371953	NM_000314.4	327	Aaa/Taa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845119	151845122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTTA	TTTA	-			P-0036352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	34	461	0	ENST00000262189.6:c.13890_13893del	p.Lys4631ValfsTer13	p.K4631Vfs*13	ENST00000262189	NM_170606.2	4630	ccTAAA/cc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0031911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	115	396	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	150	678	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562324	21562324	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	84	653	0	ENST00000382592.4:c.1595A>G	p.Asp532Gly	p.D532G	ENST00000382592	NM_014572.2	532	gAc/gGc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37681102	37681102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			3748	1126	529	0	ENST00000447079.4:c.3271C>G	p.Pro1091Ala	p.P1091A	ENST00000447079	NM_015083.1	1091	Cct/Gct																																																																														
CALR	811	MSKCC	GRCh37	19	13051060	13051060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	60	460	0	ENST00000316448.5:c.496G>A	p.Asp166Asn	p.D166N	ENST00000316448	NM_004343.3	166	Gat/Aat																																																																														
TEK	7010	MSKCC	GRCh37	9	27157835	27157835	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs143178677		P-0031911-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	56	467	0	ENST00000380036.4:c.59T>C	p.Val20Ala	p.V20A	ENST00000380036	NM_000459.3	20	gTg/gCg																																																																														
NF2	4771	MSKCC	GRCh37	22	30038189	30038189	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0036304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	78	549	0	ENST00000338641.4:c.364-2A>C		p.X122_splice	ENST00000338641	NM_000268.3	122																																																																															
STAG2	10735	MSKCC	GRCh37	X	123190037	123190037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	29	319	0	ENST00000218089.9:c.1256C>T	p.Ser419Leu	p.S419L	ENST00000218089	NM_001042749.1	419	tCa/tTa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123191719	123191722	+	frameshift_variant	Frame_Shift_Ins	INS	CTTC	CTTC	TTTTT			P-0036305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	13	151	0	ENST00000218089.9:c.1308_1311delinsTTTTT	p.Ser438Ter	p.S438*	ENST00000218089	NM_001042749.1	436	ctCTTC/ctTTTTT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	383	611	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41553402	41553402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	147	370	0	ENST00000263253.7:c.3491G>A	p.Cys1164Tyr	p.C1164Y	ENST00000263253	NM_001429.3	1164	tGt/tAt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528673	157528673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	183	565	0	ENST00000346085.5:c.6398C>T	p.Ala2133Val	p.A2133V	ENST00000346085	NM_020732.3	2133	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099885	27099885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	68	467	0	ENST00000324856.7:c.3764G>T	p.Gly1255Val	p.G1255V	ENST00000324856	NM_006015.4	1255	gGg/gTg																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39322601	39322601	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	214	494	0	ENST00000373001.3:c.391G>C	p.Glu131Gln	p.E131Q	ENST00000373001	NM_022157.3	131	Gag/Cag																																																																														
VTCN1	79679	MSKCC	GRCh37	1	117699271	117699271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	177	458	0	ENST00000369458.3:c.370G>A	p.Asp124Asn	p.D124N	ENST00000369458	NM_024626.3	124	Gat/Aat																																																																														
RET	5979	MSKCC	GRCh37	10	43600418	43600418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	104	390	0	ENST00000355710.3:c.644G>C	p.Arg215Pro	p.R215P	ENST00000355710	NM_020975.4	215	cGc/cCc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435079	18435079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	69	253	0	ENST00000266497.5:c.64C>A	p.Gln22Lys	p.Q22K	ENST00000266497		22	Caa/Aaa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	339575	339575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	315	703	0	ENST00000262320.3:c.2327G>T	p.Ser776Ile	p.S776I	ENST00000262320	NM_003502.3	776	aGt/aTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484264	57484264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	48	369	0	ENST00000371085.3:c.578G>A	p.Ser193Asn	p.S193N	ENST00000371085	NM_000516.4	193	aGc/aAc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643788	52643788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	141	577	0	ENST00000394830.3:c.2108C>T	p.Pro703Leu	p.P703L	ENST00000394830	NM_018313.4	703	cCc/cTc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149449466	149449466	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	53	508	0	ENST00000286301.3:c.1480G>C	p.Gly494Arg	p.G494R	ENST00000286301	NM_005211.3	494	Ggc/Cgc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117645534	117645534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	268	395	0	ENST00000368508.3:c.5602G>C	p.Val1868Leu	p.V1868L	ENST00000368508	NM_002944.2	1868	Gtt/Ctt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400000	139400000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	459	711	0	ENST00000277541.6:c.4348G>T	p.Glu1450Ter	p.E1450*	ENST00000277541	NM_017617.3	1450	Gag/Tag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227981	53227981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	480	686	1	ENST00000375401.3:c.2333G>T	p.Arg778Leu	p.R778L	ENST00000375401	NM_004187.3	778	cGa/cTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410412	63410413	+	missense_variant	Missense_Mutation	DNP	CA	CA	TC			P-0036308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	224	712	1	ENST00000330258.3:c.2754_2755delinsGA	p.Asp919Asn	p.D919N	ENST00000330258	NM_152424.3	918	tcTGat/tcGAat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	44	400	1	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672323	86672323	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	49	360	1	ENST00000274376.6:c.2125C>T	p.Arg709Ter	p.R709*	ENST00000274376	NM_002890.2	709	Cga/Tga																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	135	560	21	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	67	493	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	90	388	6	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	213	765	30	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	52	475	1	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012465	29012465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	67	485	0	ENST00000282397.4:c.406G>A	p.Val136Ile	p.V136I	ENST00000282397	NM_002019.4	136	Gta/Ata																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	46	595	4	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
APC	324	MSKCC	GRCh37	5	112174783	112174783	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	76	242	1	ENST00000257430.4:c.3495del	p.Lys1165AsnfsTer17	p.K1165Nfs*17	ENST00000257430	NM_000038.5	1164	atA/at																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	168	395	20	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
APC	324	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	61	375	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																														
CALR	811	MSKCC	GRCh37	19	13054650	13054658	+	inframe_deletion	In_Frame_Del	DEL	GAGGATGAG	GAGGATGAG	-	rs550353351		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	49	471	0	ENST00000316448.5:c.1191_1199del	p.Glu398_Asp400del	p.E398_D400del	ENST00000316448	NM_004343.3	393	GAGGATGAG/-																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	78	534	3	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056262	27056262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	122	429	7	ENST00000324856.7:c.1258C>T	p.Gln420Ter	p.Q420*	ENST00000324856	NM_006015.4	420	Cag/Tag																																																																														
RET	5979	MSKCC	GRCh37	10	43597879	43597879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	123	894	0	ENST00000355710.3:c.427G>A	p.Ala143Thr	p.A143T	ENST00000355710	NM_020975.4	143	Gcc/Acc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165282	47165283	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	128	431	1	ENST00000409792.3:c.843dupA	p.Glu282ArgfsTer9	p.E282Rfs*9	ENST00000409792	NM_014159.6	281	-/A																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50482355	50482355	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	103	531	3	ENST00000394963.4:c.711del	p.Phe237LeufsTer5	p.F237Lfs*5	ENST00000394963	NM_003076.4	236	Ttt/tt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029072	14029072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	46	255	0	ENST00000311895.7:c.1283C>T	p.Ala428Val	p.A428V	ENST00000311895	NM_005236.2	428	gCg/gTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549116	21549116	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	80	559	0	ENST00000382592.4:c.3160C>T	p.Arg1054Ter	p.R1054*	ENST00000382592	NM_014572.2	1054	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303304	15303304	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145069047		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	238	774	22	ENST00000263388.2:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000263388	NM_000435.2	75	cGg/cAg																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070324	37070324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	151	315	18	ENST00000231790.2:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000231790	NM_000249.3	487	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946340	2946340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	121	941	0	ENST00000396946.4:c.3397C>T	p.Arg1133Cys	p.R1133C	ENST00000396946	NM_032415.4	1133	Cgc/Tgc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	85	397	13	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022295	31022295	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	30	353	0	ENST00000375687.4:c.1780T>C	p.Cys594Arg	p.C594R	ENST00000375687	NM_015338.5	594	Tgc/Cgc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509084	66509085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	20	255	3	ENST00000273854.3:c.242dupA	p.Asn81LysfsTer8	p.N81Kfs*8	ENST00000273854	NM_004439.5	81	aat/aaAt																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	113	669	10	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	143	916	2	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304140	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	40	478	1	ENST00000355112.3:c.1543_1544del	p.Asn515Ter	p.N515*	ENST00000355112	NM_000057.2	512	ggAAaa/ggaa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78899231	78899231	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200514795		P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	81	571	0	ENST00000306801.3:c.2870C>T	p.Thr957Met	p.T957M	ENST00000306801	NM_020761.2	957	aCg/aTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5211779	5211779	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	85	684	0	ENST00000357368.4:c.5056C>T	p.Arg1686Trp	p.R1686W	ENST00000357368	NM_002850.3	1686	Cgg/Tgg																																																																														
SESN3	143686	MSKCC	GRCh37	11	94908685	94908685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	173	665	24	ENST00000536441.1:c.1369C>T	p.Arg457Trp	p.R457W	ENST00000536441	NM_144665.3	457	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919194	178919194	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	25	232	2	ENST00000263967.3:c.685del	p.Thr229LeufsTer11	p.T229Lfs*11	ENST00000263967	NM_006218.2	227	Aaa/aa																																																																														
INSR	3643	MSKCC	GRCh37	19	7117191	7117191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	63	657	4	ENST00000302850.5:c.4025del	p.Gly1342AlafsTer23	p.G1342Afs*23	ENST00000302850	NM_000208.2	1342	gGc/gc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30102133	30102133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	68	610	0	ENST00000331968.5:c.1334G>A	p.Arg445Lys	p.R445K	ENST00000331968	NM_002742.2	445	aGa/aAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373548	118373548	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	44	380	0	ENST00000534358.1:c.6941T>C	p.Leu2314Pro	p.L2314P	ENST00000534358	NM_005933.3	2314	cTg/cCg																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50480130	50480130	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	51	387	0	ENST00000394963.4:c.364A>G	p.Asn122Asp	p.N122D	ENST00000394963	NM_003076.4	122	Aat/Gat																																																																														
POLE	5426	MSKCC	GRCh37	12	133218359	133218359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	107	793	2	ENST00000320574.5:c.5252C>G	p.Ala1751Gly	p.A1751G	ENST00000320574	NM_006231.2	1751	gCc/gGc																																																																														
POLE	5426	MSKCC	GRCh37	12	133220501	133220501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	104	677	0	ENST00000320574.5:c.4212G>T	p.Glu1404Asp	p.E1404D	ENST00000320574	NM_006231.2	1404	gaG/gaT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778545	3778545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	155	901	0	ENST00000262367.5:c.6503G>A	p.Gly2168Asp	p.G2168D	ENST00000262367	NM_004380.2	2168	gGc/gAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781449	3781449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	121	393	9	ENST00000262367.5:c.4916C>T	p.Ala1639Val	p.A1639V	ENST00000262367	NM_004380.2	1639	gCt/gTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992370	72992370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	262	927	34	ENST00000268489.5:c.1675G>A	p.Val559Ile	p.V559I	ENST00000268489	NM_006885.3	559	Gtt/Att																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217036	7217036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	79	441	1	ENST00000380728.2:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000380728		162	cGg/cAg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612386	1612386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	142	844	1	ENST00000344749.5:c.1633C>T	p.Arg545Trp	p.R545W	ENST00000344749	NM_001136139.2	545	Cgg/Tgg																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627774	14627774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	71	635	9	ENST00000254322.2:c.296A>G	p.His99Arg	p.H99R	ENST00000254322	NM_006145.1	99	cAt/cGt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15311647	15311647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	16	47	1	ENST00000263388.2:c.70G>A	p.Val24Met	p.V24M	ENST00000263388	NM_000435.2	24	Gtg/Atg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224699	36224699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	124	1056	2	ENST00000222270.7:c.7085C>T	p.Pro2362Leu	p.P2362L	ENST00000222270	NM_014727.1	2362	cCg/cTg																																																																														
AXL	558	MSKCC	GRCh37	19	41749577	41749577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	104	614	2	ENST00000301178.4:c.1502G>A	p.Arg501His	p.R501H	ENST00000301178	NM_021913.4	501	cGc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028240	48028241	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	75	428	0	ENST00000234420.5:c.3119_3120del	p.Phe1040Ter	p.F1040*	ENST00000234420	NM_000179.2	1040	TTt/t																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098705	47098705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	257	657	17	ENST00000409792.3:c.6569C>T	p.Pro2190Leu	p.P2190L	ENST00000409792	NM_014159.6	2190	cCc/cTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880915	134880915	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	84	560	0	ENST00000398015.3:c.1478T>G	p.Ile493Ser	p.I493S	ENST00000398015	NM_004441.4	493	aTt/aGt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535280	66535280	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	70	608	0	ENST00000273854.3:c.181G>T	p.Val61Leu	p.V61L	ENST00000273854	NM_004439.5	61	Gtg/Ttg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56176909	56176909	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	36	266	0	ENST00000399503.3:c.2180-1G>T		p.X727_splice	ENST00000399503	NM_005921.1	727																																																																															
PLK2	10769	MSKCC	GRCh37	5	57755669	57755670	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	200	745	14	ENST00000274289.3:c.117dupC	p.Glu40ArgfsTer66	p.E40Rfs*66	ENST00000274289	NM_006622.3	39	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112179589	112179589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	80	316	9	ENST00000257430.4:c.8298C>A	p.Ser2766Arg	p.S2766R	ENST00000257430	NM_000038.5	2766	agC/agA																																																																														
IRF4	3662	MSKCC	GRCh37	6	394891	394891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	66	414	0	ENST00000380956.4:c.287G>A	p.Arg96His	p.R96H	ENST00000380956	NM_001195286.1	96	cGc/cAc																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839769	27839769	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	151	537	19	ENST00000328488.2:c.325A>G	p.Asn109Asp	p.N109D	ENST00000328488	NM_003533.2	109	Aac/Gac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968244	2968244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	89	784	0	ENST00000396946.4:c.1742C>T	p.Ala581Val	p.A581V	ENST00000396946	NM_032415.4	581	gCg/gTg																																																																														
JAK2	3717	MSKCC	GRCh37	9	5072538	5072538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	38	340	0	ENST00000381652.3:c.1688T>C	p.Val563Ala	p.V563A	ENST00000381652	NM_004972.3	563	gTa/gCa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227670	53227670	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0036309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	68	267	0	ENST00000375401.3:c.2516+2T>C		p.X839_splice	ENST00000375401	NM_004187.3	839																																																																															
TP53	7157	MSKCC	GRCh37	17	7574024	7574024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	33	696	1	ENST00000269305.4:c.1003del	p.Arg335ValfsTer10	p.R335Vfs*10	ENST00000269305	NM_001126112.2	335	Cgt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106336	27106337	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	125	784	0	ENST00000324856.7:c.5952_5953delGT	p.Ser1985GlnfsTer13	p.S1985Qfs*13	ENST00000324856	NM_006015.4	1983	TGt/t																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798461	45798461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	37	810	0	ENST00000372115.3:c.508C>T	p.Arg170Trp	p.R170W	ENST00000372115	NM_001048171.1	170	Cgg/Tgg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			154	10	204	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577375	64577375	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			555	64	764	0	ENST00000337652.1:c.207del	p.Asp70ThrfsTer49	p.D70Tfs*49	ENST00000337652	NM_130803.2	69	ccC/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444933	49444933	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	88	672	4	ENST00000301067.7:c.2533del	p.Arg845GlyfsTer85	p.R845Gfs*85	ENST00000301067	NM_003482.3	845	Cgg/gg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	68	437	1	ENST00000355739.4:c.1537G>A	p.Ala513Thr	p.A513T	ENST00000355739	NM_000123.3	513	Gca/Aca																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572555	95572555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	65	343	0	ENST00000343455.3:c.2810G>A	p.Arg937His	p.R937H	ENST00000343455	NM_177438.2	937	cGc/cAc																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023006	33023006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	64	531	0	ENST00000300177.4:c.115G>A	p.Ala39Thr	p.A39T	ENST00000300177	NM_001191322.1	39	Gcc/Acc																																																																														
MGA	23269	MSKCC	GRCh37	15	42028815	42028815	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			615	144	849	1	ENST00000219905.7:c.4357del	p.Tyr1453MetfsTer27	p.Y1453Mfs*27	ENST00000219905	NM_001164273.1	1451	ccT/cc																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	108	684	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	103	670	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																														
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	110	476	5	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14026116	14026116	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	83	416	0	ENST00000311895.7:c.1081delA	p.Met361TrpfsTer15	p.M361Wfs*15	ENST00000311895	NM_005236.2	359	gAa/ga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81946216	81946216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	27	652	0	ENST00000359376.3:c.1949G>A	p.Ser650Asn	p.S650N	ENST00000359376	NM_002661.3	650	aGc/aAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953259	81953259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	24	444	1	ENST00000359376.3:c.2225G>A	p.Arg742His	p.R742H	ENST00000359376	NM_002661.3	742	cGc/cAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29483121	29483122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			625	134	705	0	ENST00000358273.4:c.185dup	p.Leu62PhefsTer5	p.L62Ffs*5	ENST00000358273	NM_001042492.2	61	att/aTtt																																																																														
NF1	4763	MSKCC	GRCh37	17	29553492	29553492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	40	580	0	ENST00000358273.4:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000358273	NM_001042492.2	681	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29685584	29685585	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	118	763	0	ENST00000358273.4:c.8059_8060del	p.Ser2687CysfsTer5	p.S2687Cfs*5	ENST00000358273	NM_001042492.2	2686	cAG/c																																																																														
BRCA1	672	MSKCC	GRCh37	17	41256250	41256251	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	88	565	1	ENST00000357654.3:c.329dup	p.Glu111GlyfsTer3	p.E111Gfs*3	ENST00000357654	NM_007294.3	110	aag/aaAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	155	834	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
INSR	3643	MSKCC	GRCh37	19	7128960	7128960	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139944962		P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	103	501	0	ENST00000302850.5:c.2848G>A	p.Val950Ile	p.V950I	ENST00000302850	NM_000208.2	950	Gtc/Atc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281608	15281608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			548	121	812	0	ENST00000263388.2:c.4765C>T	p.Arg1589Trp	p.R1589W	ENST00000263388	NM_000435.2	1589	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216506	36216506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	132	965	2	ENST00000222270.7:c.3769C>T	p.Arg1257Cys	p.R1257C	ENST00000222270	NM_014727.1	1257	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218411	36218411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	43	497	3	ENST00000222270.7:c.4190C>T	p.Ala1397Val	p.A1397V	ENST00000222270	NM_014727.1	1397	gCg/gTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42795608	42795609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	123	894	0	ENST00000575354.2:c.2694dupC	p.Lys899GlnfsTer32	p.K899Qfs*32	ENST00000575354	NM_015125.3	896	-/C																																																																														
CIC	23152	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	56	750	0	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273299	198273299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	73	540	0	ENST00000335508.6:c.911C>T	p.Pro304Leu	p.P304L	ENST00000335508	NM_012433.2	304	cCt/cTt																																																																														
ERG	2078	MSKCC	GRCh37	21	39755570	39755570	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			518	33	672	0	ENST00000288319.7:c.1195C>A	p.Leu399Ile	p.L399I	ENST00000288319	NM_182918.3	399	Ctc/Atc																																																																														
NF2	4771	MSKCC	GRCh37	22	30050708	30050708	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	27	498	0	ENST00000338641.4:c.514del	p.Arg172GlyfsTer2	p.R172Gfs*2	ENST00000338641	NM_000268.3	170	ccA/cc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	217	567	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
MLH1	4292	MSKCC	GRCh37	3	37038181	37038181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	55	322	0	ENST00000231790.2:c.188A>G	p.Asp63Gly	p.D63G	ENST00000231790	NM_000249.3	63	gAc/gGc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067151	37067151	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	83	335	0	ENST00000231790.2:c.1065del	p.Ser356LeufsTer11	p.S356Lfs*11	ENST00000231790	NM_000249.3	354	ggC/gg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266134	41266136	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	33	484	0	ENST00000349496.5:c.133_135delTCT	p.Ser45del	p.S45del	ENST00000349496	NM_001904.3	44	cCTTct/cct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098841	47098841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			753	189	1001	0	ENST00000409792.3:c.6433G>A	p.Gly2145Arg	p.G2145R	ENST00000409792	NM_014159.6	2145	Gga/Aga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645120	86645120	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	96	518	2	ENST00000274376.6:c.1192C>T	p.Arg398Ter	p.R398*	ENST00000274376	NM_002890.2	398	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86659245	86659245	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	81	459	1	ENST00000274376.6:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000274376	NM_002890.2	512	Cga/Tga																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805926	32805927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			551	119	923	0	ENST00000374899.4:c.84dup	p.Thr29AspfsTer138	p.T29Dfs*138	ENST00000374899	NM_018833.2	28	-/G																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710779	117710779	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	80	674	0	ENST00000368508.3:c.1493A>T	p.Asp498Val	p.D498V	ENST00000368508	NM_002944.2	498	gAt/gTt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38279390	38279390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			670	126	864	0	ENST00000425967.3:c.1099G>A	p.Ala367Thr	p.A367T	ENST00000425967	NM_001174067.1	367	Gca/Aca																																																																														
TEK	7010	MSKCC	GRCh37	9	27206636	27206637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	98	671	0	ENST00000380036.4:c.2426dup	p.Asn809LysfsTer12	p.N809Kfs*12	ENST00000380036	NM_000459.3	807	-/A																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026386-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	18	427	1	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027456-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			630	523	545	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027456-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			63	313	480	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag																																																																														
YES1	7525	MSKCC	GRCh37	18	736924	736924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027456-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	350	426	0	ENST00000314574.4:c.1175A>G	p.Tyr392Cys	p.Y392C	ENST00000314574	NM_005433.3	392	tAt/tGt																																																																														
MALT1	10892	MSKCC	GRCh37	18	56402522	56402522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027456-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			34	149	173	0	ENST00000348428.3:c.1564G>T	p.Asp522Tyr	p.D522Y	ENST00000348428	NM_006785.3	522	Gat/Tat																																																																														
ATR	545	MSKCC	GRCh37	3	142261477	142261518	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTAGCACTCTGGAACTATCACCACTTACCATTTTCTTATC	TCTTAGCACTCTGGAACTATCACCACTTACCATTTTCTTATC	-			P-0027456-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	153	189	0	ENST00000350721.4:c.3439_3450+30del		p.X1147_splice	ENST00000350721	NM_001184.3	1147																																																																															
BRCA1	672	MSKCC	GRCh37	17	41245267	41245267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027456-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	605	610	0	ENST00000357654.3:c.2281G>A	p.Glu761Lys	p.E761K	ENST00000357654	NM_007294.3	761	Gaa/Aaa																																																																														
MSI2	124540	MSKCC	GRCh37	17	55334497	55334823	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGTAAGGGAGGGAGGGGGGGACGCCTGGGTCCCCCCCTTCTTGGCTTCTTTATTGCTCTTTGTTATCCCGGTGTAGGAGCCCCCCCCCCCCCGCCATTGGCTCCCCACTTCTCCTGTGCAAGGTTATTTTTTTTAAATAGCAAATCCTTTCTGAGCCCTCTATGCGACCTCTGTTGCCGAATTTCCCCCGCGTGTGCAAAAAATGCAAAAACAAAACAGAATAACAACAGAAAACTACTTTTGGATTTTGTCCTTGATCAAAATTTGCATTGCTTTTTTTTTCCACACCTTCTCTCCCCCCCCCATCTCTCTCTTTCTCTCTCTA	CAGGTAAGGGAGGGAGGGGGGGACGCCTGGGTCCCCCCCTTCTTGGCTTCTTTATTGCTCTTTGTTATCCCGGTGTAGGAGCCCCCCCCCCCCCGCCATTGGCTCCCCACTTCTCCTGTGCAAGGTTATTTTTTTTAAATAGCAAATCCTTTCTGAGCCCTCTATGCGACCTCTGTTGCCGAATTTCCCCCGCGTGTGCAAAAAATGCAAAAACAAAACAGAATAACAACAGAAAACTACTTTTGGATTTTGTCCTTGATCAAAATTTGCATTGCTTTTTTTTTCCACACCTTCTCTCCCCCCCCCATCTCTCTCTTTCTCTCTCTA	-			P-0027456-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			727	127	316	0	ENST00000284073.2:c.103+1_104-1del		p.X35_splice	ENST00000284073	NM_138962.2	35																																																																															
MSI2	124540	MSKCC	GRCh37	17	55334906	55335627	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGTAAACCATTCCCTTCTGGATTTTGTCTTTATTTTAGAACAAAGTTTAAGTTTTATTTTTGGAGGTGTCTTCGGAAGTAGCTAAGCGGATTAGAATGGGGCTCAGGCGCGTGGCTGATCTCGAACGGCGCTCTATACCACCCCCACCGCCCCCTAGTAACCCCAGAGGTTATTGTTAATTGGAGCTGAACTCTGGATACAGAGATACCCATCTCTCTGCTTTTAAGTCATTTTCCCGTCGCTTCTTTTTCTCTGTTTAAAATGACATTCAGCTTCATTTACTTTCGCATAGTTTTTTTTTTTCTTTTGATCTTAATGTGTGTTTCCCCCACACTCCCAGCTCCCCAAACTCTTAAGATCCCTCTTAGAAAGATGGTGGTAAATCTCTTCTAAGTGCCGGGCTTTCTTCGGAATAAAACAAAGCGTTAAGAAAGGGAAGGGGAGGAGGAGAGGAAACTGAGGTGGCCAAAGAGTGGAGGCACCAGCATTTTCCAAGTTACCTCCACCCTCCCTGCCCCCGTTCCACTTCCCCCGTTAACCTTGATGTTTTTTCTTGCGAGGTGGAGGGCTGTAGGCAGGAGGGGAATTGGAGGAGGGGAGTGGGAGGTGGGGGTGCGTGGGGGGCAACTTTTGCTCCTCATTCAGCCTTAGGTCTCACTCCTGGTTGCTTTCAATGGTGTCACATTTTCTTGTTTGTTTTTCTCCCTCTTTGTCTCCTTT	CAGGTAAACCATTCCCTTCTGGATTTTGTCTTTATTTTAGAACAAAGTTTAAGTTTTATTTTTGGAGGTGTCTTCGGAAGTAGCTAAGCGGATTAGAATGGGGCTCAGGCGCGTGGCTGATCTCGAACGGCGCTCTATACCACCCCCACCGCCCCCTAGTAACCCCAGAGGTTATTGTTAATTGGAGCTGAACTCTGGATACAGAGATACCCATCTCTCTGCTTTTAAGTCATTTTCCCGTCGCTTCTTTTTCTCTGTTTAAAATGACATTCAGCTTCATTTACTTTCGCATAGTTTTTTTTTTTCTTTTGATCTTAATGTGTGTTTCCCCCACACTCCCAGCTCCCCAAACTCTTAAGATCCCTCTTAGAAAGATGGTGGTAAATCTCTTCTAAGTGCCGGGCTTTCTTCGGAATAAAACAAAGCGTTAAGAAAGGGAAGGGGAGGAGGAGAGGAAACTGAGGTGGCCAAAGAGTGGAGGCACCAGCATTTTCCAAGTTACCTCCACCCTCCCTGCCCCCGTTCCACTTCCCCCGTTAACCTTGATGTTTTTTCTTGCGAGGTGGAGGGCTGTAGGCAGGAGGGGAATTGGAGGAGGGGAGTGGGAGGTGGGGGTGCGTGGGGGGCAACTTTTGCTCCTCATTCAGCCTTAGGTCTCACTCCTGGTTGCTTTCAATGGTGTCACATTTTCTTGTTTGTTTTTCTCCCTCTTTGTCTCCTTT	-			P-0027456-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			901	415	431	0	ENST00000284073.2:c.185+1_186-1del		p.X62_splice	ENST00000284073	NM_138962.2	62																																																																															
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	4477	619	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	4396	645	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028391-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	486	701	1	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032151-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	27	624	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0036215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	80	571	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133250284	133250284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	56	482	0	ENST00000320574.5:c.1236G>C	p.Lys412Asn	p.K412N	ENST00000320574	NM_006231.2	412	aaG/aaC																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217849	7217850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	59	607	0	ENST00000380728.2:c.161dupA	p.Glu55GlyfsTer42	p.E55Gfs*42	ENST00000380728		54	aag/aaAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878782	151878782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	66	506	0	ENST00000262189.6:c.6163G>A	p.Asp2055Asn	p.D2055N	ENST00000262189	NM_170606.2	2055	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0036216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	365	673	1	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0036216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	76	515	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0036216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	76	515	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058517	72058517	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	53	513	0	ENST00000357731.5:c.923C>G	p.Ala308Gly	p.A308G	ENST00000357731	NM_173808.2	308	gCg/gGg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790023	40790023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	52	568	0	ENST00000373198.4:c.2708G>A	p.Gly903Asp	p.G903D	ENST00000373198	NM_133170.3	903	gGc/gAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41542795	41542795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	52	435	2	ENST00000263253.7:c.2106G>A	p.Met702Ile	p.M702I	ENST00000263253	NM_001429.3	702	atG/atA																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0036219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	111	642	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436737	110436737	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	159	694	0	ENST00000375856.3:c.1664C>G	p.Ser555Cys	p.S555C	ENST00000375856	NM_003749.2	555	tCc/tGc																																																																														
MGA	23269	MSKCC	GRCh37	15	42042214	42042214	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	75	535	0	ENST00000219905.7:c.6409G>T	p.Glu2137Ter	p.E2137*	ENST00000219905	NM_001164273.1	2137	Gaa/Taa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004595	150004595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	172	687	0	ENST00000253339.5:c.1630C>G	p.Pro544Ala	p.P544A	ENST00000253339		544	Cca/Gca																																																																														
KIT	3815	MSKCC	GRCh37	4	55593582	55593598	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	AAACCCATGTATGAAGT	AAACCCATGTATGAAGT	CA			P-0036220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	77	451	1	ENST00000288135.5:c.1648_1664delinsCA	p.Lys550_Val555delinsGln	p.K550_V555delinsQ	ENST00000288135	NM_000222.2	550	AAACCCATGTATGAAGTa/CAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380285	25380285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	18	603	3	ENST00000256078.4:c.173C>T	p.Thr58Ile	p.T58I	ENST00000256078	NM_033360.2	58	aCa/aTa																																																																														
KIT	3815	MSKCC	GRCh37	4	55564618	55564618	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	76	603	0	ENST00000288135.5:c.506G>C	p.Gly169Ala	p.G169A	ENST00000288135	NM_000222.2	169	gGc/gCc																																																																														
KIT	3815	MSKCC	GRCh37	4	55564656	55564656	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	70	602	1	ENST00000288135.5:c.544C>A	p.Leu182Ile	p.L182I	ENST00000288135	NM_000222.2	182	Ctc/Atc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0036238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	57	208	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579524	7579527	+	frameshift_variant	Frame_Shift_Del	DEL	TGAA	TGAA	-			P-0036238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	136	840	0	ENST00000269305.4:c.160_163del	p.Phe54LeufsTer68	p.F54Lfs*68	ENST00000269305	NM_001126112.2	54	TTCAct/ct																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858560	27858560	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	26	409	0	ENST00000359303.2:c.11C>G	p.Thr4Arg	p.T4R	ENST00000359303	NM_003535.2	4	aCg/aGg																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	169	394	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23614940	23614940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	97	407	0	ENST00000261584.4:c.3401C>T	p.Ser1134Phe	p.S1134F	ENST00000261584	NM_024675.3	1134	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	72	588	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355353	15355353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201062276		P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	73	346	0	ENST00000263377.2:c.2270C>T	p.Pro757Leu	p.P757L	ENST00000263377	NM_058243.2	757	cCg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213962	36213962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	197	651	0	ENST00000222270.7:c.2788G>T	p.Ala930Ser	p.A930S	ENST00000222270	NM_014727.1	930	Gca/Tca																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499426	89499426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	85	478	1	ENST00000336596.2:c.2596A>C	p.Asn866His	p.N866H	ENST00000336596	NM_005233.5	866	Aac/Cac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0036261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	72	374	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	28	344	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	10	362	1	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0036267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	68	421	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	141	448	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	229	597	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956956	2956956	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	274	491	0	ENST00000396946.4:c.2671C>T	p.Arg891Ter	p.R891*	ENST00000396946	NM_032415.4	891	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120175	70120175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	114	363	0	ENST00000245479.2:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000245479	NM_000346.3	393	Cag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272449	11272449	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	146	461	0	ENST00000361445.4:c.3481C>T	p.Arg1161Ter	p.R1161*	ENST00000361445	NM_004958.3	1161	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289953	15289953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	208	685	0	ENST00000263388.2:c.3601C>T	p.Arg1201Cys	p.R1201C	ENST00000263388	NM_000435.2	1201	Cgc/Tgc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221226	1221226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	179	553	2	ENST00000326873.7:c.749C>T	p.Thr250Met	p.T250M	ENST00000326873	NM_000455.4	250	aCg/aTg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102196203	102196203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	131	352	0	ENST00000263464.3:c.860G>A	p.Ser287Asn	p.S287N	ENST00000263464	NM_001165.4	287	aGt/aAt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554681	63554681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	148	440	0	ENST00000307078.5:c.58G>T	p.Asp20Tyr	p.D20Y	ENST00000307078	NM_004655.3	20	Gat/Tat																																																																														
KDR	3791	MSKCC	GRCh37	4	55972106	55972106	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	122	334	0	ENST00000263923.4:c.1538C>G	p.Thr513Ser	p.T513S	ENST00000263923	NM_002253.2	513	aCt/aGt																																																																														
APC	324	MSKCC	GRCh37	5	112173531	112173532	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AG			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	101	302	0	ENST00000257430.4:c.2240_2241delinsAG	p.Ser747Ter	p.S747*	ENST00000257430	NM_000038.5	747	tCA/tAG																																																																														
APC	324	MSKCC	GRCh37	5	112175634	112175634	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	107	301	0	ENST00000257430.4:c.4344del	p.Lys1449SerfsTer24	p.K1449Sfs*24	ENST00000257430	NM_000038.5	1448	aCc/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	86	470	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	127	536	1	ENST00000342988.3:c.1052A>G	p.Asp351Gly	p.D351G	ENST00000342988	NM_005359.5	351	gAt/gGt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741958	145741958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	58	641	0	ENST00000428558.2:c.545G>A	p.Arg182Gln	p.R182Q	ENST00000428558	NM_004260.3	182	cGg/cAg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351803	89351803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	214	852	0	ENST00000301030.4:c.1147A>G	p.Ile383Val	p.I383V	ENST00000301030	NM_001256183.1	383	Ata/Gta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	143	490	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	123	402	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210506	5210506	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	75	647	0	ENST00000357368.4:c.5461C>T	p.Arg1821Ter	p.R1821*	ENST00000357368	NM_002850.3	1821	Cga/Tga																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279555	123279575	+	inframe_deletion	In_Frame_Del	DEL	GCTTGATCCACTGGATGTGGG	GCTTGATCCACTGGATGTGGG	-			P-0036277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	499	644	0	ENST00000358487.5:c.857_877del	p.Pro286_Lys292del	p.P286_K292del	ENST00000358487	NM_000141.4	286	cCCCACATCCAGTGGATCAAGCac/cac																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267022	41267023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	228	499	1	ENST00000349496.5:c.696dup	p.Lys233Ter	p.K233*	ENST00000349496	NM_001904.3	231	-/T																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442499	52442517	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGAACATGTTATTCACA	AAAGAACATGTTATTCACA	-			P-0036277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	155	467	0	ENST00000460680.1:c.228_246del	p.Ile76MetfsTer5	p.I76Mfs*5	ENST00000460680	NM_004656.3	76	atTGTGAATAACATGTTCTTT/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0036280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	117	346	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	266	801	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257426	19257426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	312	887	0	ENST00000162023.5:c.707G>T	p.Cys236Phe	p.C236F	ENST00000162023		236	tGc/tTc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257442	19257442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	321	866	1	ENST00000162023.5:c.691G>T	p.Gly231Cys	p.G231C	ENST00000162023		231	Ggc/Tgc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932688	49932688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	285	890	3	ENST00000296474.3:c.3183C>A	p.Asp1061Glu	p.D1061E	ENST00000296474	NM_002447.2	1061	gaC/gaA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485908	8485908	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	172	615	0	ENST00000356435.5:c.2909A>G	p.Gln970Arg	p.Q970R	ENST00000356435		970	cAg/cGg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0036282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	16	31	1	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061468	38061468	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	92	588	0	ENST00000250448.2:c.521C>A	p.Ser174Ter	p.S174*	ENST00000250448	NM_004496.3	174	tCg/tAg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129309	2129309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	113	795	0	ENST00000219476.3:c.3164G>A	p.Gly1055Asp	p.G1055D	ENST00000219476	NM_000548.3	1055	gGc/gAc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117622288	117622288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	404	605	0	ENST00000368508.3:c.6582G>A	p.Met2194Ile	p.M2194I	ENST00000368508	NM_002944.2	2194	atG/atA																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156617	2156617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	83	689	0	ENST00000434045.2:c.305G>C	p.Gly102Ala	p.G102A	ENST00000434045	NM_001127598.1	102	gGg/gCg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86658367	86658367	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0036321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	52	160	0	ENST00000274376.6:c.1333-1G>C		p.X445_splice	ENST00000274376	NM_002890.2	445																																																																															
TP63	8626	MSKCC	GRCh37	3	189526068	189526068	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	47	542	1	ENST00000264731.3:c.332A>G	p.Tyr111Cys	p.Y111C	ENST00000264731	NM_003722.4	111	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578178	7578178	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0036321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	714	711	0	ENST00000269305.4:c.671del	p.Glu224GlyfsTer23	p.E224Gfs*23	ENST00000269305	NM_001126112.2	224	gAg/gg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639586	3639586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	390	888	1	ENST00000294008.3:c.4053C>A	p.His1351Gln	p.H1351Q	ENST00000294008	NM_032444.2	1351	caC/caA																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197447	26197447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	115	359	0	ENST00000356476.2:c.32C>T	p.Ser11Phe	p.S11F	ENST00000356476		11	tCc/tTc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622191	1622191	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	26	530	0	ENST00000344749.5:c.684G>C	p.Trp228Cys	p.W228C	ENST00000344749	NM_001136139.2	228	tgG/tgC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106805	27106805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	174	616	0	ENST00000324856.7:c.6416C>A	p.Pro2139His	p.P2139H	ENST00000324856	NM_006015.4	2139	cCc/cAc																																																																														
STK40	83931	MSKCC	GRCh37	1	36826842	36826842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	178	658	0	ENST00000373129.3:c.92G>A	p.Arg31Lys	p.R31K	ENST00000373129	NM_032017.1	31	aGa/aAa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156834189	156834189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			890	239	913	0	ENST00000524377.1:c.256G>A	p.Asp86Asn	p.D86N	ENST00000524377	NM_002529.3	86	Gat/Aat																																																																														
TET1	80312	MSKCC	GRCh37	10	70332960	70332960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			824	208	727	0	ENST00000373644.4:c.865C>T	p.Pro289Ser	p.P289S	ENST00000373644	NM_030625.2	289	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433072	49433072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			769	182	820	0	ENST00000301067.7:c.8299C>T	p.Pro2767Ser	p.P2767S	ENST00000301067	NM_003482.3	2767	Cct/Tct																																																																														
DICER1	23405	MSKCC	GRCh37	14	95583017	95583017	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	84	323	0	ENST00000343455.3:c.1525C>T	p.Arg509Ter	p.R509*	ENST00000343455	NM_177438.2	509	Cga/Tga																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729086	66729103	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AATTCATCTGGAGATCAA	AATTCATCTGGAGATCAA	-			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	409	571	0	ENST00000307102.5:c.295_312del	p.Ile99_Lys104del	p.I99_K104del	ENST00000307102	NM_002755.3	98	ctAATTCATCTGGAGATCAAa/cta																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396571	396571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			876	220	916	0	ENST00000262320.3:c.455A>G	p.Asn152Ser	p.N152S	ENST00000262320	NM_003502.3	152	aAc/aGc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857376	9857376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	162	533	0	ENST00000330684.3:c.4025C>T	p.Ser1342Phe	p.S1342F	ENST00000330684	NM_001134407.1	1342	tCc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812260	212812260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	110	410	0	ENST00000342788.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000342788	NM_005235.2	106	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400190	41400190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			524	118	488	0	ENST00000373198.4:c.569G>A	p.Arg190Lys	p.R190K	ENST00000373198	NM_133170.3	190	aGa/aAa																																																																														
RAC2	5880	MSKCC	GRCh37	22	37622814	37622814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			924	240	892	1	ENST00000249071.6:c.478C>T	p.Leu160Phe	p.L160F	ENST00000249071	NM_002872.4	160	Ctc/Ttc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			194	63	133	0				ENST00000310581	NM_198253.2																																																																																
HIST1H3G	8355	MSKCC	GRCh37	6	26271297	26271297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			682	125	524	0	ENST00000305910.3:c.316G>A	p.Glu106Lys	p.E106K	ENST00000305910	NM_003534.2	106	Gag/Aag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673130	30673130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			706	45	472	0	ENST00000376406.3:c.3830C>T	p.Ser1277Phe	p.S1277F	ENST00000376406	NM_014641.2	1277	tCt/tTt																																																																														
LYN	4067	MSKCC	GRCh37	8	56912099	56912099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			674	184	721	0	ENST00000519728.1:c.1327C>T	p.Pro443Ser	p.P443S	ENST00000519728	NM_002350.3	443	Ccc/Tcc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931876	68931877	+	stop_gained	Nonsense_Mutation	DNP	AC	AC	TT			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			777	163	684	1	ENST00000288368.4:c.306_307delinsTT	p.Gln102_Gln103delinsHisTer	p.Q102_Q103delinsH*	ENST00000288368	NM_024870.2	102	caACaa/caTTaa																																																																														
SYK	6850	MSKCC	GRCh37	9	93606544	93606544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	199	719	0	ENST00000375746.1:c.364G>A	p.Asp122Asn	p.D122N	ENST00000375746	NM_001174167.1	122	Gat/Aat																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	117	409	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417575	139417575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019889-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			798	204	934	1	ENST00000277541.6:c.469C>T	p.Pro157Ser	p.P157S	ENST00000277541	NM_017617.3	157	Ccc/Tcc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871758	12871758	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031178-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			82	63	145	0	ENST00000228872.4:c.476-1G>T		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																															
FAT1	2195	MSKCC	GRCh37	4	187541079	187541079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031178-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	241	488	0	ENST00000441802.2:c.6661G>A	p.Gly2221Arg	p.G2221R	ENST00000441802	NM_005245.3	2221	Gga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	101	582	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	82	419	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805698	89805698	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	60	553	0	ENST00000389301.3:c.4011-1G>C		p.X1337_splice	ENST00000389301	NM_000135.2	1337																																																																															
FANCA	2175	MSKCC	GRCh37	16	89858933	89858933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	74	574	0	ENST00000389301.3:c.1029G>T	p.Gln343His	p.Q343H	ENST00000389301	NM_000135.2	343	caG/caT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591792	48591792	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	73	511	0	ENST00000342988.3:c.956-1G>T		p.X319_splice	ENST00000342988	NM_005359.5	319																																																																															
IDH1	3417	MSKCC	GRCh37	2	209110121	209110121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	128	643	2	ENST00000345146.2:c.442G>T	p.Gly148Trp	p.G148W	ENST00000345146	NM_005896.2	148	Ggg/Tgg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149440515	149440515	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	40	692	0	ENST00000286301.3:c.1879A>T	p.Lys627Ter	p.K627*	ENST00000286301	NM_005211.3	627	Aag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47006883	47006883	+	start_lost	Translation_Start_Site	SNP	G	G	C			P-0036116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	82	435	0	ENST00000329236.7:c.3G>C	p.Met1?	p.M1?	ENST00000329236	NM_001204466.1	1	atG/atC																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	18	570	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22160227	22160227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	15	391	0	ENST00000215832.6:c.404G>A	p.Arg135Lys	p.R135K	ENST00000215832	NM_002745.4	135	aGa/aAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573563	48573564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	50	381	0	ENST00000342988.3:c.153dupA	p.Asp52ArgfsTer2	p.D52Rfs*2	ENST00000342988	NM_005359.5	49	-/A																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0036119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	119	261	0	ENST00000274335.5:c.1392_1403delTAGATTATATGA	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923738	72923738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	23	691	2	ENST00000268489.5:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000268489	NM_006885.3	1114	Cga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258590	16258590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	105	470	1	ENST00000375759.3:c.5855G>A	p.Arg1952Lys	p.R1952K	ENST00000375759	NM_015001.2	1952	aGg/aAg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933742	36933742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	223	944	2	ENST00000361632.4:c.1657G>A	p.Glu553Lys	p.E553K	ENST00000361632		553	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129635	11129635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	160	734	0	ENST00000344626.4:c.2441C>T	p.Thr814Met	p.T814M	ENST00000344626	NM_003072.3	814	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	115	741	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	52	522	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261326	16261326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	39	733	0	ENST00000375759.3:c.8591C>T	p.Ser2864Leu	p.S2864L	ENST00000375759	NM_015001.2	2864	tCg/tTg																																																																														
CDC42	998	MSKCC	GRCh37	1	22412956	22412956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	23	204	0	ENST00000344548.3:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000344548	NM_001039802.1	68	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106281	27106281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	71	787	0	ENST00000324856.7:c.5892G>T	p.Glu1964Asp	p.E1964D	ENST00000324856	NM_006015.4	1964	gaG/gaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	48	741	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
SESN2	83667	MSKCC	GRCh37	1	28605706	28605706	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143630873		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	61	716	0	ENST00000253063.3:c.1310G>A	p.Arg437Gln	p.R437Q	ENST00000253063	NM_031459.4	437	cGa/cAa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939086	36939086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	95	881	2	ENST00000361632.4:c.623C>T	p.Ala208Val	p.A208V	ENST00000361632		208	gCg/gTg																																																																														
MPL	4352	MSKCC	GRCh37	1	43805238	43805238	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	77	819	0	ENST00000372470.3:c.688G>T	p.Glu230Ter	p.E230*	ENST00000372470	NM_005373.2	230	Gaa/Taa																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521491	46521491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	82	763	0	ENST00000262741.5:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000262741	NM_003629.3	306	cGa/cAa																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46714185	46714185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	43	609	0	ENST00000371975.4:c.5G>T	p.Arg2Met	p.R2M	ENST00000371975	NM_003579.3	2	aGg/aTg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46715736	46715736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	66	721	0	ENST00000371975.4:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000371975	NM_003579.3	52	cGg/cAg																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439730	51439730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	45	450	0	ENST00000262662.1:c.295G>A	p.Glu99Lys	p.E99K	ENST00000262662		99	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65335121	65335121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	97	692	0	ENST00000342505.4:c.520C>T	p.Arg174Ter	p.R174*	ENST00000342505	NM_002227.2	174	Cga/Tga																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	130	914	0	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273209	115273209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	82	661	2	ENST00000438362.2:c.1249C>T	p.Arg417Cys	p.R417C	ENST00000438362	NM_001242891.1	417	Cgt/Tgt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273218	115273218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	73	637	0	ENST00000438362.2:c.1240C>T	p.Arg414Cys	p.R414C	ENST00000438362	NM_001242891.1	414	Cgt/Tgt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162729724	162729724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	76	740	2	ENST00000367921.3:c.810G>T	p.Glu270Asp	p.E270D	ENST00000367921	NM_006182.2	270	gaG/gaT																																																																														
NUF2	83540	MSKCC	GRCh37	1	163297332	163297332	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	55	698	0	ENST00000271452.3:c.178C>T	p.Arg60Ter	p.R60*	ENST00000271452	NM_145697.2	60	Cga/Tga																																																																														
CDC73	79577	MSKCC	GRCh37	1	193107291	193107291	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	53	333	0	ENST00000367435.3:c.500C>G	p.Thr167Ser	p.T167S	ENST00000367435	NM_024529.4	167	aCt/aGt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243800977	243800977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	58	759	6	ENST00000263826.5:c.497G>A	p.Arg166Gln	p.R166Q	ENST00000263826	NM_005465.4	166	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	160	733	2	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	111	762	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717644	89717644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	92	631	1	ENST00000371953.3:c.669G>T	p.Lys223Asn	p.K223N	ENST00000371953	NM_000314.4	223	aaG/aaT																																																																														
CCND1	595	MSKCC	GRCh37	11	69466027	69466027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	76	783	0	ENST00000227507.2:c.865G>A	p.Asp289Asn	p.D289N	ENST00000227507	NM_053056.2	289	Gac/Aac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939259	71939259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	89	985	0	ENST00000298229.2:c.208C>T	p.Arg70Cys	p.R70C	ENST00000298229	NM_001567.3	70	Cgc/Tgc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94192611	94192611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145377856		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	134	920	1	ENST00000323929.3:c.1463G>A	p.Arg488His	p.R488H	ENST00000323929	NM_005591.3	488	cGt/cAt																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94192615	94192615	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	136	932	0	ENST00000323929.3:c.1459G>T	p.Glu487Ter	p.E487*	ENST00000323929	NM_005591.3	487	Gaa/Taa																																																																														
PGR	5241	MSKCC	GRCh37	11	100912816	100912816	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	56	515	0	ENST00000325455.5:c.2506C>T	p.Arg836Ter	p.R836*	ENST00000325455	NM_001202474.3	836	Cga/Tga																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195313	102195313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	80	605	0	ENST00000263464.3:c.73G>A	p.Asp25Asn	p.D25N	ENST00000263464	NM_001165.4	25	Gac/Aac																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195335	102195335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	88	652	1	ENST00000263464.3:c.95G>A	p.Arg32Gln	p.R32Q	ENST00000263464	NM_001165.4	32	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	69	586	3	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
ATM	472	MSKCC	GRCh37	11	108172385	108172385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	87	685	1	ENST00000278616.4:c.5188C>T	p.Arg1730Ter	p.R1730*	ENST00000278616	NM_000051.3	1730	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108216486	108216486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	53	389	0	ENST00000278616.4:c.8435C>A	p.Ser2812Tyr	p.S2812Y	ENST00000278616	NM_000051.3	2812	tCt/tAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118354927	118354927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	75	639	2	ENST00000534358.1:c.4116G>T	p.Glu1372Asp	p.E1372D	ENST00000534358	NM_005933.3	1372	gaG/gaT																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992217	11992217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	65	532	0	ENST00000396373.4:c.307C>T	p.Arg103Cys	p.R103C	ENST00000396373	NM_001987.4	103	Cgc/Tgc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435524	18435524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	37	335	0	ENST00000266497.5:c.509G>A	p.Gly170Glu	p.G170E	ENST00000266497		170	gGa/gAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658304	18658304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	107	721	1	ENST00000266497.5:c.3109G>T	p.Asp1037Tyr	p.D1037Y	ENST00000266497		1037	Gat/Tat																																																																														
RECQL	5965	MSKCC	GRCh37	12	21627900	21627900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	113	776	0	ENST00000421138.2:c.1230G>T	p.Met410Ile	p.M410I	ENST00000421138		410	atG/atT																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944944	31944944	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144139961		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	44	524	1	ENST00000340398.3:c.157C>T	p.Arg53Cys	p.R53C	ENST00000340398	NM_001013699.2	53	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435035	49435035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	32	618	1	ENST00000301067.7:c.6518C>T	p.Ser2173Leu	p.S2173L	ENST00000301067	NM_003482.3	2173	tCg/tTg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536873	120536873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	92	927	0	ENST00000229340.5:c.313G>A	p.Glu105Lys	p.E105K	ENST00000229340	NM_006861.6	105	Gaa/Aaa																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784089	120784089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	90	1106	0	ENST00000257552.2:c.896C>T	p.Ser299Leu	p.S299L	ENST00000257552	NM_002442.3	299	tCg/tTg																																																																														
SETD8	387893	MSKCC	GRCh37	12	123888141	123888141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	22	277	0	ENST00000330479.4:c.619G>T	p.Asp207Tyr	p.D207Y	ENST00000330479	NM_020382.3	207	Gat/Tat																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	47	648	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28599018	28599018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	85	694	1	ENST00000241453.7:c.2270G>A	p.Gly757Glu	p.G757E	ENST00000241453	NM_004119.2	757	gGg/gAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911630	32911630	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	55	656	0	ENST00000380152.3:c.3138A>C	p.Glu1046Asp	p.E1046D	ENST00000380152		1046	gaA/gaC																																																																														
DIS3	22894	MSKCC	GRCh37	13	73346942	73346942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	58	392	0	ENST00000377767.4:c.1275G>T	p.Glu425Asp	p.E425D	ENST00000377767	NM_014953.3	425	gaG/gaT																																																																														
DIS3	22894	MSKCC	GRCh37	13	73350116	73350116	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	103	695	0	ENST00000377767.4:c.769A>C	p.Asn257His	p.N257H	ENST00000377767	NM_014953.3	257	Aat/Cat																																																																														
DIS3	22894	MSKCC	GRCh37	13	73352369	73352369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	118	784	0	ENST00000377767.4:c.536G>T	p.Arg179Ile	p.R179I	ENST00000377767	NM_014953.3	179	aGa/aTa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514997	103514997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	34	409	0	ENST00000355739.4:c.1498C>T	p.Arg500Trp	p.R500W	ENST00000355739	NM_000123.3	500	Cgg/Tgg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436170	110436170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	97	887	1	ENST00000375856.3:c.2231G>A	p.Arg744His	p.R744H	ENST00000375856	NM_003749.2	744	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436848	110436848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	84	781	2	ENST00000375856.3:c.1553G>A	p.Ser518Asn	p.S518N	ENST00000375856	NM_003749.2	518	aGc/aAc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046638	30046638	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	58	773	2	ENST00000331968.5:c.2545C>T	p.Arg849Ter	p.R849*	ENST00000331968	NM_002742.2	849	Cga/Tga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060728	38060728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	108	1200	1	ENST00000250448.2:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000250448	NM_004496.3	421	Gaa/Aaa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061830	38061830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	138	1065	0	ENST00000250448.2:c.159G>A	p.Met53Ile	p.M53I	ENST00000250448	NM_004496.3	53	atG/atA																																																																														
TSHR	7253	MSKCC	GRCh37	14	81609450	81609450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	66	702	0	ENST00000298171.2:c.1048G>A	p.Ala350Thr	p.A350T	ENST00000298171	NM_000369.2	350	Gct/Act																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610328	81610328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	70	586	0	ENST00000298171.2:c.1926C>A	p.Phe642Leu	p.F642L	ENST00000298171	NM_000369.2	642	ttC/ttA																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582911	95582911	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143533680		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	86	578	1	ENST00000343455.3:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000343455	NM_177438.2	544	cGa/cAa																																																																														
AKT1	207	MSKCC	GRCh37	14	105239816	105239816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	49	868	0	ENST00000349310.3:c.804G>T	p.Lys268Asn	p.K268N	ENST00000349310	NM_001014432.1	268	aaG/aaT																																																																														
RAD51	5888	MSKCC	GRCh37	15	41023302	41023302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	94	756	1	ENST00000267868.3:c.946G>A	p.Asp316Asn	p.D316N	ENST00000267868	NM_002875.4	316	Gac/Aac																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99452084	99452084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	46	436	1	ENST00000268035.6:c.1418G>A	p.Ser473Asn	p.S473N	ENST00000268035	NM_000875.3	473	aGc/aAc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99456496	99456496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	52	403	0	ENST00000268035.6:c.1813C>T	p.Arg605Cys	p.R605C	ENST00000268035	NM_000875.3	605	Cgc/Tgc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3642785	3642785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	75	893	3	ENST00000294008.3:c.2242G>A	p.Ala748Thr	p.A748T	ENST00000294008	NM_032444.2	748	Gcc/Acc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862845	9862845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	69	807	2	ENST00000330684.3:c.2458G>A	p.Val820Ile	p.V820I	ENST00000330684	NM_001134407.1	820	Gta/Ata																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14031629	14031629	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	41	586	0	ENST00000311895.7:c.1818C>A	p.Tyr606Ter	p.Y606*	ENST00000311895	NM_005236.2	606	taC/taA																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129830	30129830	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	65	653	2	ENST00000263025.4:c.383A>G	p.Asp128Gly	p.D128G	ENST00000263025	NM_002746.2	128	gAc/gGc																																																																														
CDH1	999	MSKCC	GRCh37	16	68853227	68853227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	61	684	0	ENST00000261769.5:c.1610C>T	p.Pro537Leu	p.P537L	ENST00000261769	NM_004360.3	537	cCg/cTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68857469	68857469	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149127230		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	76	763	0	ENST00000261769.5:c.2104G>A	p.Glu702Lys	p.E702K	ENST00000261769	NM_004360.3	702	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821437	72821437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	63	831	0	ENST00000268489.5:c.10738G>A	p.Asp3580Asn	p.D3580N	ENST00000268489	NM_006885.3	3580	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984508	72984508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	108	1002	0	ENST00000268489.5:c.3076G>A	p.Glu1026Lys	p.E1026K	ENST00000268489	NM_006885.3	1026	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81888060	81888060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	33	426	0	ENST00000359376.3:c.205G>A	p.Glu69Lys	p.E69K	ENST00000359376	NM_002661.3	69	Gaa/Aaa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89871709	89871709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144560850		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	50	710	0	ENST00000389301.3:c.688G>A	p.Val230Ile	p.V230I	ENST00000389301	NM_000135.2	230	Gtc/Atc																																																																														
NF1	4763	MSKCC	GRCh37	17	29653011	29653011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	79	653	0	ENST00000358273.4:c.5009C>T	p.Ala1670Val	p.A1670V	ENST00000358273	NM_001042492.2	1670	gCt/gTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29664505	29664505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	97	732	1	ENST00000358273.4:c.6547C>T	p.Arg2183Trp	p.R2183W	ENST00000358273	NM_001042492.2	2183	Cgg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	77	530	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29684061	29684061	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	75	812	3	ENST00000358273.4:c.7822G>T	p.Glu2608Ter	p.E2608*	ENST00000358273	NM_001042492.2	2608	Gaa/Taa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37680982	37680982	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	67	563	0	ENST00000447079.4:c.3151C>T	p.Arg1051Ter	p.R1051*	ENST00000447079	NM_015083.1	1051	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37873573	37873573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	64	825	0	ENST00000269571.5:c.1738G>A	p.Glu580Lys	p.E580K	ENST00000269571		580	Gag/Aag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40474351	40474351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	64	680	0	ENST00000264657.5:c.2050G>A	p.Gly684Arg	p.G684R	ENST00000264657	NM_139276.2	684	Gga/Aga																																																																														
EZH1	2145	MSKCC	GRCh37	17	40870631	40870631	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	55	672	0	ENST00000428826.2:c.772C>T	p.Arg258Ter	p.R258*	ENST00000428826		258	Cga/Tga																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696719	47696719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	60	572	0	ENST00000347630.2:c.229G>T	p.Asp77Tyr	p.D77Y	ENST00000347630	NM_001007230.1	77	Gat/Tat																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435317	56435317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200066146		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	71	901	0	ENST00000407977.2:c.1820C>T	p.Ser607Leu	p.S607L	ENST00000407977		607	tCg/tTg																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56811561	56811561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	71	497	1	ENST00000337432.4:c.1109G>A	p.Arg370Gln	p.R370Q	ENST00000337432	NM_058216.2	370	cGa/cAa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554344	63554344	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	98	994	0	ENST00000307078.5:c.395A>C	p.Lys132Thr	p.K132T	ENST00000307078	NM_004655.3	132	aAa/aCa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78681713	78681713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	49	688	1	ENST00000306801.3:c.421G>A	p.Ala141Thr	p.A141T	ENST00000306801	NM_020761.2	141	Gcc/Acc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119022	3119022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	64	898	1	ENST00000078429.4:c.706G>A	p.Asp236Asn	p.D236N	ENST00000078429	NM_002067.2	236	Gac/Aac																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247890	10247890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	72	940	2	ENST00000340748.4:c.4312G>A	p.Asp1438Asn	p.D1438N	ENST00000340748		1438	Gat/Aat																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291206	10291206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	96	849	0	ENST00000340748.4:c.265G>T	p.Asp89Tyr	p.D89Y	ENST00000340748		89	Gat/Tat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11113822	11113822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	45	718	2	ENST00000344626.4:c.1930G>A	p.Glu644Lys	p.E644K	ENST00000344626	NM_003072.3	644	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276316	15276316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372834264		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	70	861	2	ENST00000263388.2:c.5678G>A	p.Arg1893Gln	p.R1893Q	ENST00000263388	NM_000435.2	1893	cGa/cAa																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379868	17379868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	100	1217	3	ENST00000359435.4:c.253C>T	p.Arg85Trp	p.R85W	ENST00000359435	NM_001033549.1	85	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220138	36220138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	86	986	3	ENST00000222270.7:c.4858G>A	p.Glu1620Lys	p.E1620K	ENST00000222270	NM_014727.1	1620	Gag/Aag																																																																														
ERF	2077	MSKCC	GRCh37	19	42753053	42753053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	68	793	0	ENST00000222329.4:c.1211G>A	p.Gly404Asp	p.G404D	ENST00000222329	NM_006494.2	404	gGc/gAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905725	50905725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76131127		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	54	1000	3	ENST00000440232.2:c.773C>T	p.Thr258Met	p.T258M	ENST00000440232	NM_002691.3	258	aCg/aTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919079	50919079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	50	678	0	ENST00000440232.2:c.2816C>T	p.Ser939Leu	p.S939L	ENST00000440232	NM_002691.3	939	tCg/tTg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972854	25972854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	62	745	0	ENST00000435504.4:c.1571C>T	p.Ser524Leu	p.S524L	ENST00000435504		524	tCg/tTg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39283896	39283896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	101	832	0	ENST00000402219.2:c.457C>T	p.Arg153Trp	p.R153W	ENST00000402219	NM_005633.3	153	Cgg/Tgg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046951	128046951	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	74	764	2	ENST00000285398.2:c.784G>T	p.Glu262Ter	p.E262*	ENST00000285398	NM_000122.1	262	Gaa/Taa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	96	783	2	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																																																														
CASP8	841	MSKCC	GRCh37	2	202136309	202136309	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	70	731	0	ENST00000358485.4:c.553G>T	p.Glu185Ter	p.E185*	ENST00000358485	NM_001080125.1	185	Gag/Tag																																																																														
CASP8	841	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	41	610	0	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113200	209113200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	96	662	2	ENST00000345146.2:c.307C>A	p.Leu103Met	p.L103M	ENST00000345146	NM_005896.2	103	Ctg/Atg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426674	212426674	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs112196222		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	101	712	0	ENST00000342788.4:c.2441A>G	p.Asn814Ser	p.N814S	ENST00000342788	NM_005235.2	814	aAc/aGc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225400312	225400312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	63	437	1	ENST00000264414.4:c.311C>T	p.Thr104Met	p.T104M	ENST00000264414	NM_003590.4	104	aCg/aTg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662971	227662971	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	89	929	0	ENST00000305123.5:c.484G>T	p.Glu162Ter	p.E162*	ENST00000305123	NM_005544.2	162	Gag/Tag																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794919	242794919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	62	1045	0	ENST00000334409.5:c.290T>C	p.Val97Ala	p.V97A	ENST00000334409	NM_005018.2	97	gTc/gCc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827892	40827892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	71	669	2	ENST00000373198.4:c.2536G>A	p.Val846Ile	p.V846I	ENST00000373198	NM_133170.3	846	Gtc/Atc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12447549	12447549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	70	719	0	ENST00000287820.6:c.788C>T	p.Ala263Val	p.A263V	ENST00000287820	NM_015869.4	263	gCg/gTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267236	41267236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	91	597	0	ENST00000349496.5:c.820C>T	p.Arg274Cys	p.R274C	ENST00000349496	NM_001904.3	274	Cgt/Tgt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643864	52643864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	96	793	4	ENST00000394830.3:c.2032C>T	p.Arg678Cys	p.R678C	ENST00000394830	NM_018313.4	678	Cgc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52668765	52668765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	72	609	0	ENST00000394830.3:c.1154C>A	p.Pro385His	p.P385H	ENST00000394830	NM_018313.4	385	cCt/cAt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52713694	52713694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	62	532	0	ENST00000394830.3:c.34T>C	p.Ser12Pro	p.S12P	ENST00000394830	NM_018313.4	12	Tcc/Ccc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448571	89448571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	88	713	0	ENST00000336596.2:c.1535G>A	p.Arg512Gln	p.R512Q	ENST00000336596	NM_005233.5	512	cGa/cAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468541	89468541	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	39	349	0	ENST00000336596.2:c.2074+1G>T		p.X692_splice	ENST00000336596	NM_005233.5	692																																																																															
EPHA3	2042	MSKCC	GRCh37	3	89480411	89480411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	42	460	0	ENST00000336596.2:c.2248C>T	p.Arg750Trp	p.R750W	ENST00000336596	NM_005233.5	750	Cgg/Tgg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498456	89498456	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	76	527	0	ENST00000336596.2:c.2428T>G	p.Tyr810Asp	p.Y810D	ENST00000336596	NM_005233.5	810	Tat/Gat																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119720900	119720900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	49	586	0	ENST00000316626.5:c.275G>T	p.Arg92Ile	p.R92I	ENST00000316626		92	aGa/aTa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967350	134967350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs61736108		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	42	482	0	ENST00000398015.3:c.2689G>A	p.Val897Met	p.V897M	ENST00000398015	NM_004441.4	897	Gtg/Atg																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149290780	149290780	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	70	698	0	ENST00000360632.3:c.439G>T	p.Glu147Ter	p.E147*	ENST00000360632	NM_015472.4	147	Gaa/Taa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	83	723	2	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	115	863	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	70	599	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182665365	182665365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	48	402	2	ENST00000292782.4:c.576C>A	p.Phe192Leu	p.F192L	ENST00000292782	NM_020640.2	192	ttC/ttA																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185195171	185195171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	30	383	1	ENST00000265026.3:c.2488C>T	p.Pro830Ser	p.P830S	ENST00000265026	NM_004721.4	830	Cca/Tca																																																																														
TP63	8626	MSKCC	GRCh37	3	189587161	189587161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	63	579	0	ENST00000264731.3:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000264731	NM_003722.4	393	cGa/cAa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808406	1808406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	81	1155	1	ENST00000260795.2:c.2164G>A	p.Asp722Asn	p.D722N	ENST00000260795		722	Gac/Aac																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41749389	41749389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	21	437	0	ENST00000226382.2:c.406G>A	p.Asp136Asn	p.D136N	ENST00000226382	NM_003924.3	136	Gac/Aac																																																																														
KIT	3815	MSKCC	GRCh37	4	55561767	55561767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	56	507	0	ENST00000288135.5:c.157G>A	p.Glu53Lys	p.E53K	ENST00000288135	NM_000222.2	53	Gag/Aag																																																																														
KIT	3815	MSKCC	GRCh37	4	55598084	55598084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	80	592	0	ENST00000288135.5:c.2281G>A	p.Glu761Lys	p.E761K	ENST00000288135	NM_000222.2	761	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55974004	55974004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	94	625	1	ENST00000263923.4:c.1312G>T	p.Gly438Cys	p.G438C	ENST00000263923	NM_002253.2	438	Ggc/Tgc																																																																														
TET2	54790	MSKCC	GRCh37	4	106155641	106155641	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	54	447	1	ENST00000380013.4:c.542T>A	p.Ile181Asn	p.I181N	ENST00000380013	NM_001127208.2	181	aTt/aAt																																																																														
TET2	54790	MSKCC	GRCh37	4	106193748	106193748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	42	299	0	ENST00000380013.4:c.4210C>T	p.Arg1404Ter	p.R1404*	ENST00000380013	NM_001127208.2	1404	Cga/Tga																																																																														
TET2	54790	MSKCC	GRCh37	4	106193932	106193932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	42	342	0	ENST00000380013.4:c.4394G>A	p.Arg1465Gln	p.R1465Q	ENST00000380013	NM_001127208.2	1465	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187516857	187516857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	69	546	0	ENST00000441802.2:c.13124C>T	p.Ser4375Leu	p.S4375L	ENST00000441802	NM_005245.3	4375	tCg/tTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31466354	31466354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	91	1043	1	ENST00000344624.3:c.2401C>T	p.Arg801Cys	p.R801C	ENST00000344624		801	Cgc/Tgc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38953634	38953634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146765449		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	39	360	0	ENST00000357387.3:c.2719C>T	p.Arg907Cys	p.R907C	ENST00000357387	NM_152756.3	907	Cgt/Tgt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627230	86627230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	63	542	0	ENST00000274376.6:c.605G>A	p.Gly202Asp	p.G202D	ENST00000274376	NM_002890.2	202	gGc/gAc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685313	86685313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	28	188	0	ENST00000274376.6:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000274376	NM_002890.2	1010	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112178889	112178889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	62	475	0	ENST00000257430.4:c.7598C>A	p.Ser2533Tyr	p.S2533Y	ENST00000257430	NM_000038.5	2533	tCt/tAt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176707828	176707828	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	60	324	0	ENST00000439151.2:c.5885T>G	p.Ile1962Ser	p.I1962S	ENST00000439151	NM_022455.4	1962	aTt/aGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709529	176709529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	60	576	0	ENST00000439151.2:c.5956C>T	p.Arg1986Cys	p.R1986C	ENST00000439151	NM_022455.4	1986	Cgc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722165	176722165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	47	562	0	ENST00000439151.2:c.7796C>A	p.Ser2599Tyr	p.S2599Y	ENST00000439151	NM_022455.4	2599	tCt/tAt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047230	180047230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	67	923	2	ENST00000261937.6:c.2485G>A	p.Glu829Lys	p.E829K	ENST00000261937	NM_182925.4	829	Gaa/Aaa																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839850	27839850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	81	697	1	ENST00000328488.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000328488	NM_003533.2	82	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32182015	32182015	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	67	846	0	ENST00000375023.3:c.2039A>G	p.Asp680Gly	p.D680G	ENST00000375023	NM_004557.3	680	gAc/gGc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289545	33289545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	154	1022	0	ENST00000374542.5:c.158C>T	p.Ser53Leu	p.S53L	ENST00000374542	NM_001141970.1	53	tCg/tTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956553	93956553	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	48	578	1	ENST00000369303.4:c.2683C>T	p.Arg895Ter	p.R895*	ENST00000369303	NM_004440.3	895	Cga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120701	94120701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	108	664	0	ENST00000369303.4:c.350G>A	p.Gly117Glu	p.G117E	ENST00000369303	NM_004440.3	117	gGa/gAa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552921	106552921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	116	966	0	ENST00000369096.4:c.886C>T	p.Arg296Trp	p.R296W	ENST00000369096	NM_001198.3	296	Cgg/Tgg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683892	117683892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	107	849	0	ENST00000368508.3:c.3255C>A	p.Phe1085Leu	p.F1085L	ENST00000368508	NM_002944.2	1085	ttC/ttA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683906	117683906	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	120	849	0	ENST00000368508.3:c.3241A>C	p.Lys1081Gln	p.K1081Q	ENST00000368508	NM_002944.2	1081	Aaa/Caa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157525060	157525060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	62	525	0	ENST00000346085.5:c.4955C>T	p.Thr1652Met	p.T1652M	ENST00000346085	NM_020732.3	1652	aCg/aTg																																																																														
ETV1	2115	MSKCC	GRCh37	7	14028670	14028670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	64	494	0	ENST00000405192.2:c.8G>A	p.Gly3Glu	p.G3E	ENST00000405192	NM_001163147.1	3	gGa/gAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	52	522	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23539044	23539044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	66	699	0	ENST00000380871.4:c.395C>T	p.Ser132Phe	p.S132F	ENST00000380871	NM_006167.3	132	tCc/tTc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141570572	141570572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	72	640	1	ENST00000220592.5:c.556G>A	p.Glu186Lys	p.E186K	ENST00000220592	NM_012154.3	186	Gaa/Aaa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5055672	5055672	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	48	335	0	ENST00000381652.3:c.940T>G	p.Leu314Val	p.L314V	ENST00000381652	NM_004972.3	314	Tta/Gta																																																																														
JAK2	3717	MSKCC	GRCh37	9	5066705	5066705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	67	624	0	ENST00000381652.3:c.1242G>T	p.Lys414Asn	p.K414N	ENST00000381652	NM_004972.3	414	aaG/aaT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8341701	8341701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	68	782	1	ENST00000356435.5:c.4939G>A	p.Glu1647Lys	p.E1647K	ENST00000356435		1647	Gaa/Aaa																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250271	110250271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	51	795	0	ENST00000374672.4:c.404C>T	p.Ser135Leu	p.S135L	ENST00000374672	NM_004235.4	135	tCg/tTg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760592	133760592	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229067		P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	88	1094	1	ENST00000318560.5:c.2915C>T	p.Ser972Leu	p.S972L	ENST00000318560	NM_005157.4	972	tCg/tTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923083	39923083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	115	970	1	ENST00000378444.4:c.3625C>T	p.Arg1209Cys	p.R1209C	ENST00000378444	NM_001123385.1	1209	Cgc/Tgc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932050	39932050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	55	993	0	ENST00000378444.4:c.2549G>A	p.Arg850His	p.R850H	ENST00000378444	NM_001123385.1	850	cGt/cAt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44937723	44937723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	101	725	0	ENST00000377967.4:c.2911C>T	p.Arg971Cys	p.R971C	ENST00000377967	NM_021140.2	971	Cgt/Tgt																																																																														
ARAF	369	MSKCC	GRCh37	X	47424451	47424451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	70	945	3	ENST00000377045.4:c.371G>A	p.Arg124His	p.R124H	ENST00000377045	NM_001654.4	124	cGt/cAt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53225199	53225199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	74	841	0	ENST00000375401.3:c.3019C>T	p.Arg1007Cys	p.R1007C	ENST00000375401	NM_004187.3	1007	Cgt/Tgt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53241079	53241079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	51	592	2	ENST00000375401.3:c.1132C>T	p.Arg378Trp	p.R378W	ENST00000375401	NM_004187.3	378	Cgg/Tgg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247028	53247028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	93	828	0	ENST00000375401.3:c.472G>A	p.Glu158Lys	p.E158K	ENST00000375401	NM_004187.3	158	Gaa/Aaa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410597	63410597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	91	1004	0	ENST00000330258.3:c.2570G>A	p.Arg857Gln	p.R857Q	ENST00000330258	NM_152424.3	857	cGa/cAa																																																																														
AR	367	MSKCC	GRCh37	X	66765064	66765064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	92	825	1	ENST00000374690.3:c.76C>A	p.Leu26Met	p.L26M	ENST00000374690	NM_000044.3	26	Ctg/Atg																																																																														
AR	367	MSKCC	GRCh37	X	66766474	66766474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	54	652	0	ENST00000374690.3:c.1486G>A	p.Asp496Asn	p.D496N	ENST00000374690	NM_000044.3	496	Gac/Aac																																																																														
MED12	9968	MSKCC	GRCh37	X	70347966	70347966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	61	751	0	ENST00000374080.3:c.3205G>A	p.Asp1069Asn	p.D1069N	ENST00000374080		1069	Gat/Aat																																																																														
ATRX	546	MSKCC	GRCh37	X	76763935	76763935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	85	859	0	ENST00000373344.5:c.7373G>A	p.Gly2458Glu	p.G2458E	ENST00000373344	NM_000489.3	2458	gGa/gAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76874431	76874431	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	88	492	1	ENST00000373344.5:c.5291T>G	p.Phe1764Cys	p.F1764C	ENST00000373344	NM_000489.3	1764	tTt/tGt																																																																														
ATRX	546	MSKCC	GRCh37	X	76939448	76939448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	140	1021	0	ENST00000373344.5:c.1300G>T	p.Val434Phe	p.V434F	ENST00000373344	NM_000489.3	434	Gtc/Ttc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176490	123176490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	47	409	0	ENST00000218089.9:c.457G>A	p.Asp153Asn	p.D153N	ENST00000218089	NM_001042749.1	153	Gat/Aat																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217381	123217381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	95	664	0	ENST00000218089.9:c.3035G>A	p.Arg1012Gln	p.R1012Q	ENST00000218089	NM_001042749.1	1012	cGa/cAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	687	441	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162444	47162444	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	338	577	0	ENST00000409792.3:c.3682del	p.Ser1228ValfsTer8	p.S1228Vfs*8	ENST00000409792	NM_014159.6	1228	Agt/gt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747828	41747828	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	189	411	0	ENST00000226382.2:c.941T>C	p.Phe314Ser	p.F314S	ENST00000226382	NM_003924.3	314	tTc/tCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0033936-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	234	742	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296171	15296173	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0033936-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	180	728	0	ENST00000263388.2:c.2191_2193del	p.Gln731del	p.Q731del	ENST00000263388	NM_000435.2	731	CAG/-																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	116	359	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743515	46743516	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0036051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	72	337	0	ENST00000371975.4:c.1896_1897delinsAT	p.Phe632_Gln633delinsLeuTer	p.F632_Q633delinsL*	ENST00000371975	NM_003579.3	632	ttCCag/ttATag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041349	47041349	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0036051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	96	227	0	ENST00000329236.7:c.1460-1G>C		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0036053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	482	381	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	330	411	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423548	88423548	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	92	472	0	ENST00000360948.2:c.2287A>T	p.Ile763Phe	p.I763F	ENST00000360948	NM_001012338.2	763	Atc/Ttc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591930	48591930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	116	359	0	ENST00000342988.3:c.1093G>A	p.Gly365Ser	p.G365S	ENST00000342988	NM_005359.5	365	Ggt/Agt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31374393	31374393	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	48	337	0	ENST00000328111.2:c.392A>G	p.Asn131Ser	p.N131S	ENST00000328111	NM_006892.3	131	aAc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	113	391	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	130	535	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089730	27089730	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	146	431	1	ENST00000324856.7:c.2686G>T	p.Glu896Ter	p.E896*	ENST00000324856	NM_006015.4	896	Gaa/Taa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912173	114912173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	91	379	0	ENST00000543371.1:c.1243C>T	p.Pro415Ser	p.P415S	ENST00000543371	NM_001198531.1	415	Ccc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112175770	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	42	207	0	ENST00000257430.4:c.4480delG	p.Glu1494LysfsTer13	p.E1494Kfs*13	ENST00000257430	NM_000038.5	1493	acG/ac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16237635	16237635	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	140	362	0	ENST00000375759.3:c.1082A>T	p.Lys361Ile	p.K361I	ENST00000375759	NM_015001.2	361	aAa/aTa																																																																														
CDK4	1019	MSKCC	GRCh37	12	58144438	58144438	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	19	210	0	ENST00000257904.6:c.632+1G>A		p.X211_splice	ENST00000257904	NM_000075.3	211																																																																															
RAD51D	5892	MSKCC	GRCh37	17	33428225	33428225	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	64	341	0	ENST00000335858.7:c.562C>T	p.Arg188Ter	p.R188*	ENST00000335858	NM_133629.2	188	Cga/Tga																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763503	59763503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	109	427	0	ENST00000259008.2:c.2599C>T	p.Gln867Ter	p.Q867*	ENST00000259008	NM_032043.2	867	Cag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285123	15285123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	60	676	1	ENST00000263388.2:c.4492C>A	p.Leu1498Met	p.L1498M	ENST00000263388	NM_000435.2	1498	Ctg/Atg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090611	71090611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	126	409	0	ENST00000318789.4:c.737G>A	p.Gly246Asp	p.G246D	ENST00000318789	NM_032682.5	246	gGc/gAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916855	178916855	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	117	555	1	ENST00000263967.3:c.242A>T	p.Glu81Val	p.E81V	ENST00000263967	NM_006218.2	81	gAa/gTa																																																																														
APC	324	MSKCC	GRCh37	5	112151286	112151286	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	52	239	0	ENST00000257430.4:c.930del	p.Lys311ArgfsTer25	p.K311Rfs*25	ENST00000257430	NM_000038.5	310	aCc/ac																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039291	47039291	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	151	587	0	ENST00000329236.7:c.683G>C	p.Arg228Pro	p.R228P	ENST00000329236	NM_001204466.1	228	cGc/cCc																																																																														
APC	324	MSKCC	GRCh37	5	112175771	112175771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	45	204	0	ENST00000257430.4:c.4480G>A	p.Glu1494Lys	p.E1494K	ENST00000257430	NM_000038.5	1494	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	746	316	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057730	27057730	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	234	565	0	ENST00000324856.7:c.1438C>T	p.Gln480Ter	p.Q480*	ENST00000324856	NM_006015.4	480	Cag/Tag																																																																														
ETV6	2120	MSKCC	GRCh37	12	12006363	12006363	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	114	269	0	ENST00000396373.4:c.331G>A	p.Asp111Asn	p.D111N	ENST00000396373	NM_001987.4	111	Gat/Aat																																																																														
AXIN1	8312	MSKCC	GRCh37	16	339607	339607	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	53	359	0	ENST00000262320.3:c.2295G>C	p.Glu765Asp	p.E765D	ENST00000262320	NM_003502.3	765	gaG/gaC																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222997	5222997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	155	462	0	ENST00000357368.4:c.2806G>A	p.Glu936Lys	p.E936K	ENST00000357368	NM_002850.3	936	Gag/Aag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702235	47702235	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	202	384	0	ENST00000233146.2:c.1831G>C	p.Val611Leu	p.V611L	ENST00000233146	NM_000251.2	611	Gtg/Ctg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31372595	31372595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	149	333	0	ENST00000328111.2:c.236G>T	p.Gly79Val	p.G79V	ENST00000328111	NM_006892.3	79	gGg/gTg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808301	1808301	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	208	616	0	ENST00000260795.2:c.2059A>G	p.Ile687Val	p.I687V	ENST00000260795		687	Atc/Gtc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729711	41729711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	128	378	1	ENST00000242208.4:c.818G>T	p.Gly273Val	p.G273V	ENST00000242208	NM_002192.2	273	gGc/gTc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742464	145742470	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCTGC	CCGCTGC	-			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	240	581	0	ENST00000428558.2:c.318_324del	p.Gln107SerfsTer5	p.Q107Sfs*5	ENST00000428558	NM_004260.3	106	ggGCAGCGG/gg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53224470	53224470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	191	502	0	ENST00000375401.3:c.3243G>C	p.Trp1081Cys	p.W1081C	ENST00000375401	NM_004187.3	1081	tgG/tgC																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2226316	2226318	+	missense_variant	Missense_Mutation	ONP	GGG	GGG	TGT			P-0036059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	316	586	0	ENST00000326181.6:c.1929_1931delinsTGT	p.Gln643_Gly644delinsHisVal	p.Q643_G644delinsHV	ENST00000326181	NM_032271.2	643	caGGGc/caTGTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	251	453	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
PGR	5241	MSKCC	GRCh37	11	100912716	100912716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	32	394	0	ENST00000325455.5:c.2606G>A	p.Arg869His	p.R869H	ENST00000325455	NM_001202474.3	869	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428604	49428604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	263	585	0	ENST00000301067.7:c.10346G>C	p.Gly3449Ala	p.G3449A	ENST00000301067	NM_003482.3	3449	gGt/gCt																																																																														
TSHR	7253	MSKCC	GRCh37	14	81528523	81528523	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	120	280	0	ENST00000298171.2:c.202C>G	p.Pro68Ala	p.P68A	ENST00000298171	NM_000369.2	68	Cca/Gca																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89457267	89457267	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0036061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	24	338	0	ENST00000336596.2:c.1748T>G	p.Phe583Cys	p.F583C	ENST00000336596	NM_005233.5	583	tTt/tGt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31431719	31431719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	37	310	0	ENST00000344624.3:c.3109C>T	p.Arg1037Ter	p.R1037*	ENST00000344624		1037	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589266	67589267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	76	169	0	ENST00000274335.5:c.1257dup	p.Leu420IlefsTer22	p.L420Ifs*22	ENST00000274335		418	-/A																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968275	2968275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	42	597	1	ENST00000396946.4:c.1711G>A	p.Asp571Asn	p.D571N	ENST00000396946	NM_032415.4	571	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	217	551	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	73	469	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643430	38643434	+	frameshift_variant	Frame_Shift_Del	DEL	TAAGT	TAAGT	-			P-0036108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	82	561	0	ENST00000299084.4:c.906_910del	p.Leu302PhefsTer9	p.L302Ffs*9	ENST00000299084	NM_152594.2	300	acTAAGTta/acta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	66	597	0	ENST00000269305.4:c.580C>G	p.Leu194Val	p.L194V	ENST00000269305	NM_001126112.2	194	Ctt/Gtt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163791	47163792	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0036108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	64	519	0	ENST00000409792.3:c.2334_2335del	p.Val779Ter	p.V779*	ENST00000409792	NM_014159.6	778	ccAGtt/cctt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575049	48575083	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTAGGTGGCTGGTCGGAAAGGATTTCCTCATG	TTTCTAGGTGGCTGGTCGGAAAGGATTTCCTCATG	-			P-0036108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	21	293	0	ENST00000342988.3:c.250-6_278del		p.X84_splice	ENST00000342988	NM_005359.5	84																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060573	38060573	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	27	767	0	ENST00000250448.2:c.1416delC	p.Ter473SerfsTer11	p.*473Sfs*11	ENST00000250448	NM_004496.3	472	tcC/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	145	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	69	325	0	ENST00000342988.3:c.1477G>A	p.Asp493Asn	p.D493N	ENST00000342988	NM_005359.5	493	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	110	610	0	ENST00000269305.4:c.810T>A	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	115	533	0	ENST00000304494.5:c.334del	p.Arg112ValfsTer34	p.R112Vfs*34	ENST00000304494	NM_000077.4	112	Cgt/gt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	115	533	0	ENST00000304494.5:c.334del	p.Arg112ValfsTer34	p.R112Vfs*34	ENST00000304494	NM_000077.4	112	Cgt/gt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971024	21971024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	115	533	0	ENST00000304494.5:c.334del	p.Arg112ValfsTer34	p.R112Vfs*34	ENST00000304494	NM_000077.4	112	Cgt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	291	706	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	344	523	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	116	590	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175789	112175789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	124	273	0	ENST00000257430.4:c.4501del	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1500	Ttt/tt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198288650	198288650	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	249	604	1	ENST00000335508.6:c.77A>T	p.Asp26Val	p.D26V	ENST00000335508	NM_012433.2	26	gAt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112174372	112174372	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0036086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	56	220	0	ENST00000257430.4:c.3081T>A	p.Tyr1027Ter	p.Y1027*	ENST00000257430	NM_000038.5	1027	taT/taA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687294	117687294	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0036086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	39	338	0	ENST00000368508.3:c.2757A>T	p.Glu919Asp	p.E919D	ENST00000368508	NM_002944.2	919	gaA/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	266	705	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	62	508	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	51	598	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	86	619	1	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637539	52637540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	34	491	0	ENST00000394830.3:c.2776dup	p.Arg926LysfsTer4	p.R926Kfs*4	ENST00000394830	NM_018313.4	926	aga/aAga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099108	27099109	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	145	413	0	ENST00000324856.7:c.3525dup	p.Leu1176IlefsTer17	p.L1176Ifs*17	ENST00000324856	NM_006015.4	1175	cca/ccAa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2185874	2185874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	81	664	1	ENST00000398665.3:c.146C>A	p.Pro49Gln	p.P49Q	ENST00000398665	NM_032482.2	49	cCg/cAg																																																																														
AKT2	208	MSKCC	GRCh37	19	40747910	40747910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	228	726	0	ENST00000392038.2:c.508C>T	p.Arg170Trp	p.R170W	ENST00000392038	NM_001626.4	170	Cgg/Tgg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966088	25966088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	94	708	0	ENST00000435504.4:c.3118T>C	p.Ser1040Pro	p.S1040P	ENST00000435504		1040	Tca/Cca																																																																														
APC	324	MSKCC	GRCh37	5	112173848	112173849	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0036087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	92	337	0	ENST00000257430.4:c.2563_2564del	p.Glu855ThrfsTer56	p.E855Tfs*56	ENST00000257430	NM_000038.5	853	GAg/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	38	418	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	34	622	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	70	532	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	28	607	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	28	607	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	28	607	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578429	7578430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	77	851	0	ENST00000269305.4:c.499_500dup	p.Gln167HisfsTer4	p.Q167Hfs*4	ENST00000269305	NM_001126112.2	167	cag/caCAg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738074	145738074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	43	865	3	ENST00000428558.2:c.2836C>T	p.Arg946Cys	p.R946C	ENST00000428558	NM_004260.3	946	Cgt/Tgt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852482	63852483	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	43	584	0	ENST00000279873.7:c.3261dup	p.Asn1088Ter	p.N1088*	ENST00000279873	NM_032199.2	1087	tgt/tgTt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864144	57864144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	72	674	0	ENST00000228682.2:c.1621C>A	p.Arg541Ser	p.R541S	ENST00000228682	NM_005269.2	541	Cgc/Agc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370874	55370874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	85	685	0	ENST00000297316.4:c.176C>T	p.Ala59Val	p.A59V	ENST00000297316	NM_022454.3	59	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0036094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	9	524	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	44	726	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861886	57861886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	35	536	1	ENST00000228682.2:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000228682	NM_005269.2	396	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	57	446	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0036096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	21	191	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745588	162745588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	56	446	1	ENST00000367921.3:c.2003G>A	p.Arg668His	p.R668H	ENST00000367921	NM_006182.2	668	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112173964	112173968	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAG	GGAAG	-			P-0036096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	38	293	2	ENST00000257430.4:c.2673_2677del	p.Met891IlefsTer19	p.M891Ifs*19	ENST00000257430	NM_000038.5	891	atGGAAGaa/ataa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635201	87635201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	79	475	0	ENST00000277120.3:c.2253C>A	p.Asp751Glu	p.D751E	ENST00000277120		751	gaC/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0036130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	88	501	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0036130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	131	768	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	101	602	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438169	56438169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	136	884	0	ENST00000407977.2:c.824G>C	p.Cys275Ser	p.C275S	ENST00000407977		275	tGt/tCt																																																																														
IRF4	3662	MSKCC	GRCh37	6	401499	401499	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	30	359	0	ENST00000380956.4:c.821G>C	p.Cys274Ser	p.C274S	ENST00000380956	NM_001195286.1	274	tGc/tCc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753175	57753175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	239	441	0	ENST00000274289.3:c.841G>A	p.Glu281Lys	p.E281K	ENST00000274289	NM_006622.3	281	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	33	477	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	208	612	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																														
MITF	4286	MSKCC	GRCh37	3	70008501	70008501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147148433		P-0036003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	20	287	0	ENST00000352241.4:c.1091G>A	p.Arg364His	p.R364H	ENST00000352241	NM_198159.2	364	cGc/cAc																																																																														
MPL	4352	MSKCC	GRCh37	1	43805133	43805133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	36	534	1	ENST00000372470.3:c.583C>A	p.Pro195Thr	p.P195T	ENST00000372470	NM_005373.2	195	Cct/Act																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839778	27839778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	86	500	0	ENST00000328488.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000328488	NM_003533.2	106	Gag/Cag																																																																														
RAC1	5879	MSKCC	GRCh37	7	6431575	6431575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	49	181	0	ENST00000356142.4:c.128A>G	p.Asn43Ser	p.N43S	ENST00000356142	NM_018890.3	43	aAt/aGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918592	44918593	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0036003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	130	482	0	ENST00000377967.4:c.1076_1077dup	p.Thr360AlafsTer18	p.T360Afs*18	ENST00000377967	NM_021140.2	359	ggc/gGCgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	68	289	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	17	442	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	151	616	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0035998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	64	340	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0035998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	64	340	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
ATM	472	MSKCC	GRCh37	11	108235839	108235845	+	frameshift_variant	Frame_Shift_Del	DEL	ACCATGA	ACCATGA	-			P-0035998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	64	383	0	ENST00000278616.4:c.8882_8888del	p.Thr2961IlefsTer3	p.T2961Ifs*3	ENST00000278616	NM_000051.3	2961	ACCATGAat/at																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445089	49445089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	36	502	0	ENST00000301067.7:c.2377G>A	p.Glu793Lys	p.E793K	ENST00000301067	NM_003482.3	793	Gag/Aag																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40459506	40459506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	21	420	0	ENST00000345506.4:c.1767G>C	p.Trp589Cys	p.W589C	ENST00000345506	NM_003152.3	589	tgG/tgC																																																																														
JAK3	3718	MSKCC	GRCh37	19	17941316	17941316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	54	477	0	ENST00000458235.1:c.3092C>T	p.Ser1031Leu	p.S1031L	ENST00000458235	NM_000215.3	1031	tCg/tTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295192	1295193	+	upstream_gene_variant	5'Flank	INS	-	-	GCGGAAAGGAAGGGGAGGGGCTA			P-0035998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	19	190	0				ENST00000310581	NM_198253.2																																																																																
TSC1	7248	MSKCC	GRCh37	9	135779192	135779192	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0035998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	20	333	0	ENST00000298552.3:c.2054C>G	p.Ser685Ter	p.S685*	ENST00000298552	NM_001162426.1	685	tCa/tGa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922061	39922061	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	57	676	0	ENST00000378444.4:c.4111C>T	p.Gln1371Ter	p.Q1371*	ENST00000378444	NM_001123385.1	1371	Cag/Tag																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53244001	53244001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	33	533	0	ENST00000375401.3:c.992C>T	p.Ser331Phe	p.S331F	ENST00000375401	NM_004187.3	331	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	161	686	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	208	495	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	101	511	1	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879794	37879794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	97	478	0	ENST00000269571.5:c.2089G>T	p.Val697Leu	p.V697L	ENST00000269571		697	Gtg/Ttg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	25	403	0	ENST00000397062.3:c.100C>T	p.Arg34Ter	p.R34*	ENST00000397062	NM_006164.4	34	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591102	67591113	+	inframe_deletion	In_Frame_Del	DEL	CATTAAACCAGA	CATTAAACCAGA	-			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	48	300	0	ENST00000274335.5:c.1696_1707del	p.Ile566_Asp569del	p.I566_D569del	ENST00000274335		565	agCATTAAACCAGAc/agc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72241872	72241872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	87	314	0	ENST00000357731.5:c.518G>A	p.Arg173Gln	p.R173Q	ENST00000357731	NM_173808.2	173	cGa/cAa																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257169	19257169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	119	541	0	ENST00000162023.5:c.794C>A	p.Pro265Gln	p.P265Q	ENST00000162023		265	cCg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175411	112175412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AACA			P-0036006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	53	280	0	ENST00000257430.4:c.4121_4124dup	p.His1375GlnfsTer12	p.H1375Qfs*12	ENST00000257430	NM_000038.5	1374	gaa/gAACAaa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279595	123279595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	108	660	0	ENST00000358487.5:c.837G>T	p.Lys279Asn	p.K279N	ENST00000358487	NM_000141.4	279	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	495	733	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7976482	7976482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	139	661	1	ENST00000319144.4:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000319144	NM_001139.2	637	cGa/cAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603007	48603007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0036009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	77	318	0	ENST00000342988.3:c.1309-1G>C		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66280017	66280017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	54	240	0	ENST00000273854.3:c.1672G>A	p.Glu558Lys	p.E558K	ENST00000273854	NM_004439.5	558	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81392110	81392110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	205	476	1	ENST00000222390.5:c.167C>A	p.Ala56Glu	p.A56E	ENST00000222390	NM_000601.4	56	gCa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	23	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0036010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	55	822	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112891035	112891035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	23	372	0	ENST00000351677.2:c.369G>T	p.Glu123Asp	p.E123D	ENST00000351677	NM_002834.3	123	gaG/gaT																																																																														
ATM	472	MSKCC	GRCh37	11	108186757	108186757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0036010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	31	460	0	ENST00000278616.4:c.6115G>T	p.Glu2039Ter	p.E2039*	ENST00000278616	NM_000051.3	2039	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	186	908	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	108	424	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945033	31945033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	189	1003	1	ENST00000340398.3:c.68C>T	p.Thr23Met	p.T23M	ENST00000340398	NM_001013699.2	23	aCg/aTg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929412	44929415	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0036012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	155	360	0	ENST00000377967.4:c.2515_2518del	p.Asn839ValfsTer27	p.N839Vfs*27	ENST00000377967	NM_021140.2	838	ACAAac/ac																																																																														
APC	324	MSKCC	GRCh37	5	112155032	112155032	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	131	534	0	ENST00000257430.4:c.1307del	p.Asn436IlefsTer18	p.N436Ifs*18	ENST00000257430	NM_000038.5	435	Aaa/aa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11107210	11107210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	192	657	0	ENST00000344626.4:c.1802C>T	p.Pro601Leu	p.P601L	ENST00000344626	NM_003072.3	601	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	267	830	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100685	8100685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	164	800	0	ENST00000346208.3:c.659C>A	p.Thr220Asn	p.T220N	ENST00000346208		220	aCc/aAc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702382	47702382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	100	329	0	ENST00000233146.2:c.1978G>C	p.Asp660His	p.D660H	ENST00000233146	NM_000251.2	660	Gat/Cat																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703574	47703574	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	155	732	0	ENST00000233146.2:c.2076del	p.Cys693ValfsTer17	p.C693Vfs*17	ENST00000233146	NM_000251.2	692	Ggg/gg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719243	61719243	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	52	485	0	ENST00000401558.2:c.1814G>C	p.Gly605Ala	p.G605A	ENST00000401558	NM_003400.3	605	gGa/gCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0036018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	32	461	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194859	29194859	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0036018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	58	931	1	ENST00000240100.2:c.869T>A	p.Ile290Asn	p.I290N	ENST00000240100	NM_001394.6	290	aTc/aAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	125	420	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245513	153245513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	156	511	0	ENST00000281708.4:c.1678G>C	p.Asp560His	p.D560H	ENST00000281708	NM_033632.3	560	Gat/Cat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	111	326	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0036020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	143	518	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
PIM1	5292	MSKCC	GRCh37	6	37138955	37138955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1650	176	874	0	ENST00000373509.5:c.295G>A	p.Gly99Ser	p.G99S	ENST00000373509	NM_002648.3	99	Ggt/Agt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813630	50813630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	171	688	1	ENST00000398568.2:c.1184C>T	p.Ser395Phe	p.S395F	ENST00000398568	NM_001042412.1	395	tCt/tTt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58677894	58677894	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	41	479	1	ENST00000305921.3:c.119C>A	p.Ser40Ter	p.S40*	ENST00000305921	NM_003620.3	40	tCg/tAg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520123	9520123	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	56	435	0	ENST00000353224.5:c.2146T>C	p.Tyr716His	p.Y716H	ENST00000353224	NM_177990.2	716	Tac/Cac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47058685	47058685	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	87	697	0	ENST00000409792.3:c.7593G>C	p.Glu2531Asp	p.E2531D	ENST00000409792	NM_014159.6	2531	gaG/gaC																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439302	52439302	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56238158		P-0036020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	61	616	0	ENST00000460680.1:c.940G>A	p.Glu314Lys	p.E314K	ENST00000460680	NM_004656.3	314	Gag/Aag																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170011255	170011255	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	189	685	0	ENST00000295797.4:c.1376C>G	p.Ser459Cys	p.S459C	ENST00000295797	NM_002740.5	459	tCc/tGc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265418	152265418	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	110	531	0	ENST00000206249.3:c.871C>A	p.Leu291Ile	p.L291I	ENST00000206249	NM_000125.3	291	Ctt/Att																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370763	55370763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	170	539	2	ENST00000297316.4:c.65C>T	p.Ala22Val	p.A22V	ENST00000297316	NM_022454.3	22	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	471	640	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	591	819	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0036023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	162	365	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	477	480	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
POLD1	5424	MSKCC	GRCh37	19	50906331	50906331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	349	807	0	ENST00000440232.2:c.992G>A	p.Arg331Gln	p.R331Q	ENST00000440232	NM_002691.3	331	cGg/cAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	90	616	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	91	623	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	219	646	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	38	942	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	193	528	0	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	453	835	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589610	67589612	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	54	260	0	ENST00000274335.5:c.1376_1378delAAA	p.Lys459del	p.K459del	ENST00000274335		458	gAAAaa/gaa																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	105	659	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
ALK	238	MSKCC	GRCh37	2	30143383	30143383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	89	692	0	ENST00000389048.3:c.143G>A	p.Arg48His	p.R48H	ENST00000389048	NM_004304.4	48	cGc/cAc																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	121	434	5	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	79	670	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	136	767	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	187	673	8	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	141	987	4	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468185	120468185	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	260	739	3	ENST00000256646.2:c.4254delC	p.Ser1419AlafsTer8	p.S1419Afs*8	ENST00000256646	NM_024408.3	1418	ccC/cc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	204	578	14	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	71	339	5	ENST00000380152.3:c.1813delA	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																														
CD276	80381	MSKCC	GRCh37	15	73994854	73994854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	33	126	0	ENST00000318443.5:c.338G>A	p.Arg113His	p.R113H	ENST00000318443	NM_001024736.1	113	cGt/cAt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508725	106508725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	228	607	0	ENST00000359195.3:c.723del	p.Gly242AlafsTer17	p.G242Afs*17	ENST00000359195	NM_002649.2	240	aCc/ac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962854	2962854	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	89	884	2	ENST00000396946.4:c.2054delG	p.Gly685AlafsTer31	p.G685Afs*31	ENST00000396946	NM_032415.4	685	gGc/gc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	136	480	0	ENST00000237289.4:c.1368delG	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																														
BBC3	27113	MSKCC	GRCh37	19	47725018	47725019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	355	967	0	ENST00000449228.1:c.725dupG	p.Arg243GlnfsTer7	p.R243Qfs*7	ENST00000449228	NM_001127240.2	242	ggc/ggGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100312	27100312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	295	847	2	ENST00000324856.7:c.4024C>T	p.Gln1342Ter	p.Q1342*	ENST00000324856	NM_006015.4	1342	Cag/Tag																																																																														
B2M	567	MSKCC	GRCh37	15	45007741	45007742	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	61	497	0	ENST00000558401.1:c.194_195delGA	p.Arg65AsnfsTer2	p.R65Nfs*2	ENST00000558401	NM_004048.2	63	gGA/g																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	360	880	5	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	184	514	4	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739691	145739691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	263	799	1	ENST00000428558.2:c.1760C>T	p.Ala587Val	p.A587V	ENST00000428558	NM_004260.3	587	gCg/gTg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509927	187509927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	63	451	1	ENST00000441802.2:c.13586C>T	p.Ala4529Val	p.A4529V	ENST00000441802	NM_005245.3	4529	gCg/gTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851591	134851591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	210	659	0	ENST00000398015.3:c.997G>A	p.Val333Ile	p.V333I	ENST00000398015	NM_004441.4	333	Gtc/Atc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250244	110250244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	239	832	0	ENST00000374672.4:c.431C>T	p.Ala144Val	p.A144V	ENST00000374672	NM_004235.4	144	gCg/gTg																																																																														
ATR	545	MSKCC	GRCh37	3	142176560	142176560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151162347		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	129	560	0	ENST00000350721.4:c.7541G>A	p.Arg2514His	p.R2514H	ENST00000350721	NM_001184.3	2514	cGc/cAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78857228	78857228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	125	801	0	ENST00000306801.3:c.1594C>T	p.Arg532Trp	p.R532W	ENST00000306801	NM_020761.2	532	Cgg/Tgg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38133981	38133981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	287	859	0	ENST00000317025.8:c.3905del	p.Asn1302MetfsTer4	p.N1302Mfs*4	ENST00000317025	NM_023034.1	1302	aAt/at																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376248	15376248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	144	613	2	ENST00000263377.2:c.766delC	p.Gln256SerfsTer27	p.Q256Sfs*27	ENST00000263377	NM_058243.2	256	Cag/ag																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78519468	78519468	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	67	555	0	ENST00000306801.3:c.43del	p.Glu15ArgfsTer17	p.E15Rfs*17	ENST00000306801	NM_020761.2	13	ctG/ct																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517474	176517474	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200344385		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	172	936	1	ENST00000292408.4:c.175C>T	p.Arg59Trp	p.R59W	ENST00000292408	NM_213647.1	59	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228761	36228761	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	273	881	1	ENST00000222270.7:c.7660C>T	p.Arg2554Cys	p.R2554C	ENST00000222270	NM_014727.1	2554	Cgt/Tgt																																																																														
FH	2271	MSKCC	GRCh37	1	241661204	241661204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	98	847	1	ENST00000366560.3:c.1457C>T	p.Ala486Val	p.A486V	ENST00000366560	NM_000143.3	486	gCt/gTt																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199861	138199861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	106	522	0	ENST00000237289.4:c.1279C>A	p.Pro427Thr	p.P427T	ENST00000237289	NM_001270507.1	427	Cct/Act																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099117	27099117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	162	411	0	ENST00000324856.7:c.3533G>T	p.Gly1178Val	p.G1178V	ENST00000324856	NM_006015.4	1178	gGc/gTc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845423	156845423	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	367	1027	0	ENST00000524377.1:c.1466A>G	p.His489Arg	p.H489R	ENST00000524377	NM_002529.3	489	cAc/cGc																																																																														
TET1	80312	MSKCC	GRCh37	10	70405043	70405043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	163	645	2	ENST00000373644.4:c.2557G>T	p.Gly853Cys	p.G853C	ENST00000373644	NM_030625.2	853	Ggt/Tgt																																																																														
TET1	80312	MSKCC	GRCh37	10	70451534	70451535	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	307	813	2	ENST00000373644.4:c.6380_6381dup	p.Val2128ThrfsTer53	p.V2128Tfs*53	ENST00000373644	NM_030625.2	2125	ctc/ctCAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420067	49420067	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	60	742	0	ENST00000301067.7:c.15682T>C	p.Tyr5228His	p.Y5228H	ENST00000301067	NM_003482.3	5228	Tat/Cat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422959	49422959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	287	845	0	ENST00000301067.7:c.14136G>T	p.Glu4712Asp	p.E4712D	ENST00000301067	NM_003482.3	4712	gaG/gaT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427680	49427682	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	164	722	0	ENST00000301067.7:c.10806_10808del	p.Gln3612del	p.Q3612del	ENST00000301067	NM_003482.3	3602	caACAg/cag																																																																														
MSI1	4440	MSKCC	GRCh37	12	120806636	120806636	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	164	282	0	ENST00000257552.2:c.100G>T	p.Glu34Ter	p.E34*	ENST00000257552	NM_002442.3	34	Gaa/Taa																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68353790	68353790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	76	491	0	ENST00000487270.1:c.625C>A	p.Leu209Ile	p.L209I	ENST00000487270	NM_133509.3	209	Ctt/Att																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43705382	43705382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	95	1072	0	ENST00000382044.4:c.5240G>A	p.Ser1747Asn	p.S1747N	ENST00000382044	NM_001141980.1	1747	aGt/aAt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2131672	2131672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	137	964	0	ENST00000219476.3:c.3687G>T	p.Gln1229His	p.Q1229H	ENST00000219476	NM_000548.3	1229	caG/caT																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632378	3632378	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	137	1068	0	ENST00000294008.3:c.5470C>T	p.Gln1824Ter	p.Q1824*	ENST00000294008	NM_032444.2	1824	Cag/Tag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641113	3641113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	498	1337	1	ENST00000294008.3:c.2526T>G	p.Asp842Glu	p.D842E	ENST00000294008	NM_032444.2	842	gaT/gaG																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349260	11349260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	140	339	0	ENST00000332029.2:c.76T>C	p.Ser26Pro	p.S26P	ENST00000332029	NM_003745.1	26	Tcc/Ccc																																																																														
CDH1	999	MSKCC	GRCh37	16	68853308	68853308	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	243	623	0	ENST00000261769.5:c.1691T>C	p.Leu564Pro	p.L564P	ENST00000261769	NM_004360.3	564	cTa/cCa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217874	2217874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	120	1045	0	ENST00000398665.3:c.2648T>C	p.Ile883Thr	p.I883T	ENST00000398665	NM_032482.2	883	aTt/aCt																																																																														
INSR	3643	MSKCC	GRCh37	19	7184573	7184573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	137	511	0	ENST00000302850.5:c.728G>A	p.Cys243Tyr	p.C243Y	ENST00000302850	NM_000208.2	243	tGt/tAt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295228	15295228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	421	1134	3	ENST00000263388.2:c.2444C>T	p.Ala815Val	p.A815V	ENST00000263388	NM_000435.2	815	gCt/gTt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15311605	15311605	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1445073298		P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	42	111	0	ENST00000263388.2:c.112del	p.Ala38LeufsTer198	p.A38Lfs*198	ENST00000263388	NM_000435.2	38	Gct/ct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214812	36214812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	239	793	0	ENST00000222270.7:c.3238G>A	p.Val1080Ile	p.V1080I	ENST00000222270	NM_014727.1	1080	Gtc/Atc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31511249	31511249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	316	967	1	ENST00000344624.3:c.1325G>A	p.Arg442His	p.R442H	ENST00000344624		442	cGt/cAt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515636	31515636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	160	564	0	ENST00000344624.3:c.983G>A	p.Gly328Glu	p.G328E	ENST00000344624		328	gGa/gAa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80063767	80063769	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	135	495	0	ENST00000265081.6:c.1917_1919del	p.Phe639del	p.F639del	ENST00000265081	NM_002439.4	638	TTC/-																																																																														
APC	324	MSKCC	GRCh37	5	112162856	112162856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	145	562	0	ENST00000257430.4:c.1460G>T	p.Gly487Val	p.G487V	ENST00000257430	NM_000038.5	487	gGg/gTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671699	30671699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	274	823	0	ENST00000376406.3:c.5261G>T	p.Arg1754Met	p.R1754M	ENST00000376406	NM_014641.2	1754	aGg/aTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324073	31324073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	43	306	0	ENST00000412585.2:c.490G>A	p.Ala164Thr	p.A164T	ENST00000412585	NM_005514.6	164	Gct/Act																																																																														
STK19	8859	MSKCC	GRCh37	6	31947212	31947212	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	328	760	0	ENST00000375331.2:c.685C>T	p.Arg229Ter	p.R229*	ENST00000375331	NM_004197.1	229	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140434521	140434521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	103	384	0	ENST00000288602.6:c.2177G>A	p.Arg726His	p.R726H	ENST00000288602	NM_004333.4	726	cGc/cAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945103	151945103	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	48	742	0	ENST00000262189.6:c.2416T>C	p.Ser806Pro	p.S806P	ENST00000262189	NM_170606.2	806	Tcc/Ccc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69005900	69005900	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	203	677	0	ENST00000288368.4:c.2311T>C	p.Ser771Pro	p.S771P	ENST00000288368	NM_024870.2	771	Tct/Cct																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739319	145739319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	45	848	0	ENST00000428558.2:c.2051C>T	p.Thr684Ile	p.T684I	ENST00000428558	NM_004260.3	684	aCa/aTa																																																																														
TEK	7010	MSKCC	GRCh37	9	27220097	27220097	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	320	740	0	ENST00000380036.4:c.3157del	p.Gln1053ArgfsTer9	p.Q1053Rfs*9	ENST00000380036	NM_000459.3	1052	Ccc/cc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402544	139402544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	363	945	2	ENST00000277541.6:c.3373G>A	p.Ala1125Thr	p.A1125T	ENST00000277541	NM_017617.3	1125	Gcg/Acg																																																																														
AR	367	MSKCC	GRCh37	X	66931346	66931346	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	109	651	0	ENST00000374690.3:c.1988C>A	p.Ser663Ter	p.S663*	ENST00000374690	NM_000044.3	663	tCa/tAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76763976	76763976	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	306	865	0	ENST00000373344.5:c.7332G>C	p.Leu2444Phe	p.L2444F	ENST00000373344	NM_000489.3	2444	ttG/ttC																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266714	198266714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	43	495	0	ENST00000335508.6:c.2218G>C	p.Gly740Arg	p.G740R	ENST00000335508	NM_012433.2	740	Gga/Cga																																																																														
BRAF	673	MSKCC	GRCh37	7	140476833	140476833	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0036029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	30	673	0	ENST00000288602.6:c.1573C>G	p.Leu525Val	p.L525V	ENST00000288602	NM_004333.4	525	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	483	843	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	530	558	0	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0036032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	68	627	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78820364	78820364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0036032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	56	748	0	ENST00000306801.3:c.1304T>C	p.Ile435Thr	p.I435T	ENST00000306801	NM_020761.2	435	aTc/aCc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47142948	47142948	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0036032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	40	401	0	ENST00000409792.3:c.5015G>A	p.Gly1672Glu	p.G1672E	ENST00000409792	NM_014159.6	1672	gGa/gAa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045540	47045581	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAAGTACGGCGGCATATCCACAGCCTCTGTGTGAGTGGCTG	GGAAGTACGGCGGCATATCCACAGCCTCTGTGTGAGTGGCTG	-			P-0036032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	37	733	0	ENST00000329236.7:c.2275_2303+13del		p.X759_splice	ENST00000329236	NM_001204466.1	759																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	239	830	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	190	675	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
B2M	567	MSKCC	GRCh37	15	45007711	45007711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	69	508	0	ENST00000558401.1:c.158C>A	p.Ser53Tyr	p.S53Y	ENST00000558401	NM_004048.2	53	tCc/tAc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22153321	22153321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	173	524	0	ENST00000215832.6:c.589G>C	p.Glu197Gln	p.E197Q	ENST00000215832	NM_002745.4	197	Gaa/Caa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645789	12645789	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	47	373	0	ENST00000251849.4:c.681-1G>C		p.X227_splice	ENST00000251849	NM_002880.3	227																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38955776	38955776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	44	430	0	ENST00000357387.3:c.2530G>A	p.Glu844Lys	p.E844K	ENST00000357387	NM_152756.3	844	Gag/Aag																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73113186	73113186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	10	102	0	ENST00000356692.5:c.527C>T	p.Pro176Leu	p.P176L	ENST00000356692		176	cCa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	253	714	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	100	303	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870778	12870778	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	46	106	0	ENST00000228872.4:c.5C>A	p.Ser2Ter	p.S2*	ENST00000228872	NM_004064.3	2	tCa/tAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906957	32906957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	317	403	0	ENST00000380152.3:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000380152		448	Cgt/Tgt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838148	89838148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	242	685	0	ENST00000389301.3:c.2089G>T	p.Val697Phe	p.V697F	ENST00000389301	NM_000135.2	697	Gtt/Ttt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5219479	5219479	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	196	635	0	ENST00000357368.4:c.3766-1G>C		p.X1256_splice	ENST00000357368	NM_002850.3	1256																																																																															
APC	324	MSKCC	GRCh37	5	112173696	112173696	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0036035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	172	341	0	ENST00000257430.4:c.2405del	p.Asp802AlafsTer18	p.D802Afs*18	ENST00000257430	NM_000038.5	802	gAc/gc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	311	519	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831201	72831201	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	229	441	0	ENST00000268489.5:c.5380C>T	p.Gln1794Ter	p.Q1794*	ENST00000268489	NM_006885.3	1794	Cag/Tag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061211	38061211	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	806	496	0	ENST00000250448.2:c.778T>G	p.Leu260Val	p.L260V	ENST00000250448	NM_004496.3	260	Ttg/Gtg																																																																														
ATRX	546	MSKCC	GRCh37	X	76954101	76954122	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAACCACTGATTTTATCTAAA	AGAACCACTGATTTTATCTAAA	-			P-0035765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	401	224	0	ENST00000373344.5:c.134-5_150del		p.X45_splice	ENST00000373344	NM_000489.3	45																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0035962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	165	857	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	92	605	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	92	539	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0035962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	159	378	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045136	47045136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	317	360	0	ENST00000329236.7:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000329236	NM_001204466.1	715	Cga/Tga																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002372-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	195	433	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002372-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			87	63	219	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39742679	39742679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002372-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	166	355	0	ENST00000361337.2:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000361337	NM_003286.2	508	Cgt/Tgt																																																																														
RYBP	23429	MSKCC	GRCh37	3	72428573	72428573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002372-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	151	335	0	ENST00000477973.2:c.429C>T	p.Pro144Leu	p.P144L	ENST00000477973	NM_012234.5	144	cCt/cTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	92	307	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221821	55221821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	121	397	0	ENST00000275493.2:c.865G>A	p.Ala289Thr	p.A289T	ENST00000275493	NM_005228.3	289	Gcc/Acc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861786	57861786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	33	330	0	ENST00000228682.2:c.1087G>T	p.Val363Leu	p.V363L	ENST00000228682	NM_005269.2	363	Gta/Tta																																																																														
CDK8	1024	MSKCC	GRCh37	13	26923264	26923264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	33	304	0	ENST00000381527.3:c.260C>T	p.Ser87Phe	p.S87F	ENST00000381527	NM_001260.1	87	tCt/tTt																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152858095	152858095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	103	412	0	ENST00000406277.2:c.520G>C	p.Asp174His	p.D174H	ENST00000406277	NM_152274.4	174	Gac/Cac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692922	89692922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	332	463	0	ENST00000371953.3:c.406T>C	p.Cys136Arg	p.C136R	ENST00000371953	NM_000314.4	136	Tgt/Cgt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	238	581	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	169	328	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675268	176675269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	139	352	0	ENST00000439151.2:c.4591dupA	p.Met1531AsnfsTer4	p.M1531Nfs*4	ENST00000439151	NM_022455.4	1528	-/A																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	84	316	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	895	592	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	137	426	0	ENST00000371953.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000371953	NM_000314.4	130	cGa/cTa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149516594	149516594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150173975		P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	78	736	4	ENST00000261799.4:c.17C>T	p.Ala6Val	p.A6V	ENST00000261799	NM_002609.3	6	gCg/gTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11303288	11303288	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199646229		P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	265	647	3	ENST00000361445.4:c.1295C>T	p.Ala432Val	p.A432V	ENST00000361445	NM_004958.3	432	gCg/gTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436066	56436066	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	37	513	0	ENST00000407977.2:c.1071C>A	p.Tyr357Ter	p.Y357*	ENST00000407977		357	taC/taA																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610258	10610258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	181	761	3	ENST00000171111.5:c.452G>A	p.Cys151Tyr	p.C151Y	ENST00000171111	NM_203500.1	151	tGt/tAt																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858221	27858221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	202	569	0	ENST00000359303.2:c.350G>T	p.Arg117Leu	p.R117L	ENST00000359303	NM_003535.2	117	cGt/cTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023864	27023865	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	34	174	1	ENST00000324856.7:c.970_971delinsT	p.Gly324SerfsTer39	p.G324Sfs*39	ENST00000324856	NM_006015.4	324	GGc/Tc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593315	67593318	+	protein_altering_variant	In_Frame_Del	DEL	GTAC	GTAC	A			P-0035771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	172	334	0	ENST00000274335.5:c.2061_2064delinsA	p.Tyr688del	p.Y688del	ENST00000274335		687	ttGTAC/ttA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061218	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCCGTTCTCGAACATGTT	GCCGTTCTCGAACATGTT	-			P-0035807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	315	551	0	ENST00000250448.2:c.754_771del	p.Asn252_Gly257del	p.N252_G257del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGC/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	365	674	0	ENST00000269305.4:c.423C>A	p.Cys141Ter	p.C141*	ENST00000269305	NM_001126112.2	141	tgC/tgA																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943786	71943786	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	249	616	0	ENST00000298229.2:c.1829A>T	p.Tyr610Phe	p.Y610F	ENST00000298229	NM_001567.3	610	tAc/tTc																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020824	26020824	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	35	281	0	ENST00000357647.3:c.107T>A	p.Val36Glu	p.V36E	ENST00000357647	NM_003529.2	36	gTg/gAg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929592	44929592	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	94	111	0	ENST00000377967.4:c.2693del	p.Lys898ArgfsTer6	p.K898Rfs*6	ENST00000377967	NM_021140.2	898	Aag/ag																																																																														
AR	367	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0035809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	27	158	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	203	798	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																														
EP300	2033	MSKCC	GRCh37	22	41545817	41545817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	54	612	0	ENST00000263253.7:c.2432G>T	p.Gly811Val	p.G811V	ENST00000263253	NM_001429.3	811	gGg/gTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15302238	15302238	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	63	548	0	ENST00000263388.2:c.1033A>C	p.Thr345Pro	p.T345P	ENST00000263388	NM_000435.2	345	Act/Cct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0035815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	35	383	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0035815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	35	383	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0035815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	35	383	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268761	41268761	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	67	417	0	ENST00000349496.5:c.999C>A	p.Tyr333Ter	p.Y333*	ENST00000349496	NM_001904.3	333	taC/taA																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437783	52437789	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGGTC	AGAGGTC	-			P-0035815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	100	595	0	ENST00000460680.1:c.1372_1378del	p.Asp458GlnfsTer111	p.D458Qfs*111	ENST00000460680	NM_004656.3	458	GACCTCTca/ca																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0035816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	106	232	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0035816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	34	535	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108121601	108121601	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	144	400	0	ENST00000278616.4:c.1409C>G	p.Ser470Ter	p.S470*	ENST00000278616	NM_000051.3	470	tCa/tGa																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	102	642	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	34	407	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	123	662	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	112	622	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	65	644	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	125	603	3	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	58	218	0	ENST00000378444.4:c.4862delC	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																														
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	24	386	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287446	46287446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	20	359	1	ENST00000334344.6:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000334344	NM_152641.2	1769	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528596	8528596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	19	311	0	ENST00000356435.5:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000356435		179	cGa/cAa																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652078	36652078	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45548832		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	125	721	2	ENST00000244741.5:c.200G>A	p.Arg67His	p.R67H	ENST00000244741	NM_000389.4	67	cGt/cAt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532654	63532654	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	39	679	1	ENST00000307078.5:c.1925del	p.Lys642ArgfsTer47	p.K642Rfs*47	ENST00000307078	NM_004655.3	642	aAg/ag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845477	72845477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	76	458	0	ENST00000268489.5:c.3863C>T	p.Thr1288Met	p.T1288M	ENST00000268489	NM_006885.3	1288	aCg/aTg																																																																														
WT1	7490	MSKCC	GRCh37	11	32417943	32417943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	72	427	0	ENST00000332351.3:c.1109G>A	p.Arg370His	p.R370H	ENST00000332351	NM_024426.4	370	cGt/cAt																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145736828	145736828	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	94	505	0	ENST00000428558.2:c.3613C>T	p.Gln1205Ter	p.Q1205*	ENST00000428558	NM_004260.3	1205	Cag/Tag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314993	1314993	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	93	489	1				ENST00000381566																																																																																	
WT1	7490	MSKCC	GRCh37	11	32456461	32456461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	43	448	0	ENST00000332351.3:c.431C>T	p.Pro144Leu	p.P144L	ENST00000332351	NM_024426.4	144	cCg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420670	49420670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	73	550	0	ENST00000301067.7:c.15079C>T	p.Arg5027Ter	p.R5027*	ENST00000301067	NM_003482.3	5027	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	113	672	1	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																														
ATR	545	MSKCC	GRCh37	3	142178067	142178067	+	splice_donor_variant	Splice_Site	SNP	A	A	G	rs200556378		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	13	245	0	ENST00000350721.4:c.7349+2T>C		p.X2450_splice	ENST00000350721	NM_001184.3	2450																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36228164	36228164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	86	587	0	ENST00000222270.7:c.7550G>A	p.Arg2517Gln	p.R2517Q	ENST00000222270	NM_014727.1	2517	cGg/cAg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748962	43748962	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141222111		P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	39	866	2	ENST00000382044.4:c.1844C>T	p.Thr615Met	p.T615M	ENST00000382044	NM_001141980.1	615	aCg/aTg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2133780	2133780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	94	612	0	ENST00000219476.3:c.3968C>T	p.Ala1323Val	p.A1323V	ENST00000219476	NM_000548.3	1323	gCg/gTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38955709	38955709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	17	296	0	ENST00000357387.3:c.2597G>A	p.Arg866Gln	p.R866Q	ENST00000357387	NM_152756.3	866	cGg/cAg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861951	57861951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	76	373	0	ENST00000228682.2:c.1252C>T	p.Arg418Trp	p.R418W	ENST00000228682	NM_005269.2	418	Cgg/Tgg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966157	25966157	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	105	632	1	ENST00000435504.4:c.3049C>T	p.Gln1017Ter	p.Q1017*	ENST00000435504		1017	Cag/Tag																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374825	149374825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	44	385	1	ENST00000360632.3:c.269C>T	p.Ser90Leu	p.S90L	ENST00000360632	NM_015472.4	90	tCg/tTg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400830	72400830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	36	321	0	ENST00000357731.5:c.341G>A	p.Gly114Asp	p.G114D	ENST00000357731	NM_173808.2	114	gGc/gAc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28601513	28601513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	87	712	0	ENST00000253063.3:c.1198G>A	p.Val400Ile	p.V400I	ENST00000253063	NM_031459.4	400	Gtc/Atc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36940986	36940986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	82	509	1	ENST00000361632.4:c.353G>A	p.Arg118His	p.R118H	ENST00000361632		118	cGc/cAc																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612878	228612878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	94	579	0	ENST00000366696.1:c.149G>A	p.Arg50His	p.R50H	ENST00000366696	NM_003493.2	50	cGc/cAc																																																																														
WT1	7490	MSKCC	GRCh37	11	32456516	32456516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	31	159	0	ENST00000332351.3:c.376C>T	p.Pro126Ser	p.P126S	ENST00000332351	NM_024426.4	126	Ccg/Tcg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118363835	118363835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	67	414	0	ENST00000534358.1:c.5068G>A	p.Glu1690Lys	p.E1690K	ENST00000534358	NM_005933.3	1690	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18656304	18656304	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	22	391	1	ENST00000266497.5:c.2987del	p.Lys996SerfsTer9	p.K996Sfs*9	ENST00000266497		995	Aaa/aa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244167	46244167	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	61	358	0	ENST00000334344.6:c.2262del	p.Thr755GlnfsTer3	p.T755Qfs*3	ENST00000334344	NM_152641.2	754	gTt/gt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81914521	81914521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	56	404	0	ENST00000359376.3:c.655G>A	p.Asp219Asn	p.D219N	ENST00000359376	NM_002661.3	219	Gat/Aat																																																																														
MSI2	124540	MSKCC	GRCh37	17	55693427	55693428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	86	530	0	ENST00000284073.2:c.636dup	p.Gly213TrpfsTer147	p.G213Wfs*147	ENST00000284073	NM_138962.2	212	ctt/cTtt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56770069	56770069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	73	505	0	ENST00000337432.4:c.65C>T	p.Ala22Val	p.A22V	ENST00000337432	NM_058216.2	22	gCg/gTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10257153	10257153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	88	441	1	ENST00000340748.4:c.2720T>A	p.Ile907Asn	p.I907N	ENST00000340748		907	aTc/aAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919657	50919657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	121	712	0	ENST00000440232.2:c.2825C>T	p.Pro942Leu	p.P942L	ENST00000440232	NM_002691.3	942	cCg/cTg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693909	47693909	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	26	332	0	ENST00000233146.2:c.1623del	p.Val542Ter	p.V542*	ENST00000233146	NM_000251.2	541	acT/ac																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52677264	52677264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	54	538	2	ENST00000394830.3:c.995G>A	p.Arg332His	p.R332H	ENST00000394830	NM_018313.4	332	cGt/cAt																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204830	128204830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	106	853	0	ENST00000341105.2:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000341105	NM_032638.4	204	cGa/cAa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519336	176519336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	30	469	0	ENST00000292408.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000292408	NM_213647.1	248	Cgg/Tgg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288942	33288942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	63	384	2	ENST00000374542.5:c.610C>T	p.Arg204Trp	p.R204W	ENST00000374542	NM_001141970.1	204	Cgg/Tgg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953017	2953017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	147	751	1	ENST00000396946.4:c.2923C>T	p.Arg975Trp	p.R975W	ENST00000396946	NM_032415.4	975	Cgg/Tgg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900330	101900330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	15	330	0	ENST00000374994.4:c.764G>A	p.Arg255His	p.R255H	ENST00000374994	NM_004612.2	255	cGt/cAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417517	139417517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	117	941	0	ENST00000277541.6:c.527G>A	p.Arg176Gln	p.R176Q	ENST00000277541	NM_017617.3	176	cGg/cAg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426675	47426675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	89	323	0	ENST00000377045.4:c.920C>A	p.Pro307His	p.P307H	ENST00000377045	NM_001654.4	307	cCc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70342188	70342188	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	76	238	0	ENST00000374080.3:c.1240A>G	p.Thr414Ala	p.T414A	ENST00000374080		414	Act/Gct																																																																														
BTK	695	MSKCC	GRCh37	X	100604925	100604925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	22	211	0	ENST00000308731.7:c.1928C>T	p.Thr643Ile	p.T643I	ENST00000308731	NM_000061.2	643	aCt/aTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	173	381	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	337	598	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																														
RET	5979	MSKCC	GRCh37	10	43610099	43610099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	255	581	0	ENST00000355710.3:c.2051C>A	p.Pro684Gln	p.P684Q	ENST00000355710	NM_020975.4	684	cCg/cAg																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589785	69589785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	160	16	0	ENST00000168712.1:c.68G>T	p.Trp23Leu	p.W23L	ENST00000168712	NM_002007.2	23	tGg/tTg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40459646	40459646	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	137	575	0	ENST00000345506.4:c.1811A>T	p.His604Leu	p.H604L	ENST00000345506	NM_003152.3	604	cAc/cTc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546700	9546700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	124	376	0	ENST00000353224.5:c.1322G>T	p.Ser441Ile	p.S441I	ENST00000353224	NM_177990.2	441	aGc/aTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045768	47045768	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	146	314	0	ENST00000329236.7:c.2415del	p.Ile806LeufsTer2	p.I806Lfs*2	ENST00000329236	NM_001204466.1	805	ggC/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	141	572	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578477	+	inframe_deletion	In_Frame_Del	DEL	GGG	GGG	-			P-0035865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	253	806	0	ENST00000269305.4:c.453_455del	p.Pro153del	p.P153del	ENST00000269305	NM_001126112.2	151	ccCCCg/ccg																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683417	182683417	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	67	607	0	ENST00000292782.4:c.128A>G	p.Asn43Ser	p.N43S	ENST00000292782	NM_020640.2	43	aAt/aGt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	152	644	0	ENST00000397062.3:c.246A>T	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaT																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103519016	103519016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	112	463	0	ENST00000355739.4:c.2354A>G	p.Gln785Arg	p.Q785R	ENST00000355739	NM_000123.3	785	cAg/cGg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804198	46804198	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	218	756	0	ENST00000290295.7:c.809A>T	p.Lys270Ile	p.K270I	ENST00000290295	NM_006361.5	270	aAa/aTa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39637981	39637981	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	125	600	0	ENST00000262039.4:c.2398A>T	p.Lys800Ter	p.K800*	ENST00000262039	NM_002647.2	800	Aaa/Taa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249943	39249943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	99	646	0	ENST00000402219.2:c.1626A>G	p.Ile542Met	p.I542M	ENST00000402219	NM_005633.3	542	atA/atG																																																																														
TET2	54790	MSKCC	GRCh37	4	106180799	106180799	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	40	408	0	ENST00000380013.4:c.3827T>C	p.Leu1276Pro	p.L1276P	ENST00000380013	NM_001127208.2	1276	cTg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	92	789	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0035875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	34	287	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0035875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	34	287	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
RAB35	11021	MSKCC	GRCh37	12	120535170	120535170	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	152	520	0	ENST00000229340.5:c.485A>G	p.Asn162Ser	p.N162S	ENST00000229340	NM_006861.6	162	aAc/aGc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016571	12016571	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	57	393	0	ENST00000353533.5:c.707T>G	p.Leu236Arg	p.L236R	ENST00000353533	NM_003010.3	236	cTt/cGt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340408	8340408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	74	532	0	ENST00000356435.5:c.5188C>T	p.Arg1730Trp	p.R1730W	ENST00000356435		1730	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	69	415	9				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0035908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	105	634	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045016	47045016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	127	383	0	ENST00000329236.7:c.2108C>T	p.Ser703Leu	p.S703L	ENST00000329236	NM_001204466.1	703	tCa/tTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023943	27023943	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	24	81	0	ENST00000324856.7:c.1049C>A	p.Ser350Ter	p.S350*	ENST00000324856	NM_006015.4	350	tCg/tAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228998	36228998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	138	791	0	ENST00000222270.7:c.7778G>A	p.Arg2593His	p.R2593H	ENST00000222270	NM_014727.1	2593	cGc/cAc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984364	201984365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0035908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	360	539	0	ENST00000359651.3:c.1030_1031dup	p.Val345GlyfsTer103	p.V345Gfs*103	ENST00000359651		343	-/CG																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118382717	118382717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	51	419	0	ENST00000534358.1:c.11123G>A	p.Arg3708His	p.R3708H	ENST00000534358	NM_005933.3	3708	cGc/cAc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987025	36987025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	132	607	0	ENST00000354822.5:c.664G>A	p.Glu222Lys	p.E222K	ENST00000354822	NM_001079668.2	222	Gag/Aag																																																																														
BBC3	27113	MSKCC	GRCh37	19	47724999	47724999	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	303	782	0	ENST00000449228.1:c.745G>C	p.Asp249His	p.D249H	ENST00000449228	NM_001127240.2	249	Gac/Cac																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735342	204735342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	50	236	0	ENST00000302823.3:c.143C>T	p.Ala48Val	p.A48V	ENST00000302823	NM_005214.4	48	gCc/gTc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434140	12434140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	2581	368	0	ENST00000287820.6:c.508A>G	p.Lys170Glu	p.K170E	ENST00000287820	NM_015869.4	170	Aag/Gag																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650324	48650324	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	119	338	0	ENST00000376670.3:c.294C>A	p.Tyr98Ter	p.Y98*	ENST00000376670	NM_002049.3	98	taC/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	334	555	0	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923045	44923048	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0035911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	437	216	0	ENST00000377967.4:c.1909_1912del	p.Ser637ThrfsTer53	p.S637Tfs*53	ENST00000377967	NM_021140.2	636	CTATct/ct																																																																														
POLE	5426	MSKCC	GRCh37	12	133218408	133218408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	176	660	2	ENST00000320574.5:c.5203G>A	p.Ala1735Thr	p.A1735T	ENST00000320574	NM_006231.2	1735	Gcc/Acc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061200	38061201	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCGGCGCAAG			P-0035912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	171	455	0	ENST00000250448.2:c.777_788dup	p.Arg262_Gln263insHisLeuArgArg	p.R262_Q263insHLRR	ENST00000250448	NM_004496.3	263	cag/caCTTGCGCCGCCAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	271	594	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440707	56440707	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	313	624	0	ENST00000407977.2:c.511A>T	p.Lys171Ter	p.K171*	ENST00000407977		171	Aag/Tag																																																																														
CIC	23152	MSKCC	GRCh37	19	42795592	42795593	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	91	812	0	ENST00000575354.2:c.2673dup	p.Val892CysfsTer39	p.V892Cfs*39	ENST00000575354	NM_015125.3	891	tct/tcTt																																																																														
MED12	9968	MSKCC	GRCh37	X	70349247	70349247	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	138	371	0	ENST00000374080.3:c.3659T>A	p.Val1220Glu	p.V1220E	ENST00000374080		1220	gTg/gAg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945058	151945058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	55	669	0	ENST00000262189.6:c.2461C>G	p.Pro821Ala	p.P821A	ENST00000262189	NM_170606.2	821	Cca/Gca																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44820601	44820601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	27	261	0	ENST00000377967.4:c.298G>C	p.Gly100Arg	p.G100R	ENST00000377967	NM_021140.2	100	Ggt/Cgt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30046534	30046534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	226	623	0	ENST00000331968.5:c.2649C>G	p.His883Gln	p.H883Q	ENST00000331968	NM_002742.2	883	caC/caG																																																																														
MGA	23269	MSKCC	GRCh37	15	42041855	42041855	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	211	451	0	ENST00000219905.7:c.6050C>G	p.Ser2017Ter	p.S2017*	ENST00000219905	NM_001164273.1	2017	tCa/tGa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66679749	66679749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	145	363	0	ENST00000307102.5:c.64G>A	p.Gly22Arg	p.G22R	ENST00000307102	NM_002755.3	22	Ggg/Agg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778383	3778383	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	254	673	0	ENST00000262367.5:c.6665C>A	p.Ala2222Asp	p.A2222D	ENST00000262367	NM_004380.2	2222	gCt/gAt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647536	23647536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	265	625	0	ENST00000261584.4:c.331G>A	p.Asp111Asn	p.D111N	ENST00000261584	NM_024675.3	111	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579374	7579375	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	230	675	0	ENST00000269305.4:c.312_313delinsTT	p.Gln104_Gly105delinsHisCys	p.Q104_G105delinsHC	ENST00000269305	NM_001126112.2	104	caGGgc/caTTgc																																																																														
NF1	4763	MSKCC	GRCh37	17	29553624	29553624	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	207	493	0	ENST00000358273.4:c.2173G>T	p.Glu725Ter	p.E725*	ENST00000358273	NM_001042492.2	725	Gaa/Taa																																																																														
GNA11	2767	MSKCC	GRCh37	19	3110280	3110280	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	243	731	0	ENST00000078429.4:c.270G>C	p.Met90Ile	p.M90I	ENST00000078429	NM_002067.2	90	atG/atC																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36209098	36209098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	29	88	0	ENST00000222270.7:c.178G>A	p.Glu60Lys	p.E60K	ENST00000222270	NM_014727.1	60	Gag/Aag																																																																														
CIC	23152	MSKCC	GRCh37	19	42796616	42796616	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	211	632	0	ENST00000575354.2:c.3173C>A	p.Ser1058Ter	p.S1058*	ENST00000575354	NM_015125.3	1058	tCa/tAa																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086164	16086164	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	349	434	0	ENST00000281043.3:c.1340T>C	p.Leu447Ser	p.L447S	ENST00000281043	NM_005378.4	447	tTg/tCg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86685282	86685282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	71	202	0	ENST00000274376.6:c.2998G>A	p.Glu1000Lys	p.E1000K	ENST00000274376	NM_002890.2	1000	Gag/Aag																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981728	70981728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	282	796	0	ENST00000276594.2:c.368G>T	p.Gly123Val	p.G123V	ENST00000276594	NM_024504.3	123	gGt/gTt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141559373	141559373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	243	629	0	ENST00000220592.5:c.1428G>T	p.Lys476Asn	p.K476N	ENST00000220592	NM_012154.3	476	aaG/aaT																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5563174	5563174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	175	399	0	ENST00000397747.3:c.779G>C	p.Arg260Thr	p.R260T	ENST00000397747	NM_025239.3	260	aGa/aCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485863	8485863	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	151	365	0	ENST00000356435.5:c.2954A>T	p.Lys985Ile	p.K985I	ENST00000356435		985	aAa/aTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056317	27056317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	32	405	2	ENST00000324856.7:c.1313C>T	p.Ala438Val	p.A438V	ENST00000324856	NM_006015.4	438	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	52	792	1	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	95	539	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
STK40	83931	MSKCC	GRCh37	1	36820004	36820004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	38	742	0	ENST00000373129.3:c.584A>G	p.His195Arg	p.H195R	ENST00000373129	NM_032017.1	195	cAc/cGc																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058574	72058574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	129	620	0	ENST00000357731.5:c.866A>G	p.Gln289Arg	p.Q289R	ENST00000357731	NM_173808.2	289	cAg/cGg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	22	449	0	ENST00000369535.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000369535	NM_002524.4	12	Ggt/Agt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163318800	163318800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	96	428	0	ENST00000271452.3:c.1190A>G	p.Glu397Gly	p.E397G	ENST00000271452	NM_145697.2	397	gAa/gGa																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263974	104263974	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	58	267	0	ENST00000369902.3:c.71delC	p.Pro24ArgfsTer72	p.P24Rfs*72	ENST00000369902	NM_016169.3	22	gCc/gc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104269048	104269049	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	151	617	0	ENST00000369902.3:c.306_307del	p.Asn102LysfsTer4	p.N102Kfs*4	ENST00000369902	NM_016169.3	102	aAC/a																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	95	488	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	94	705	1	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625281	69625281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35983315		P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	141	789	1	ENST00000334134.2:c.512G>A	p.Arg171His	p.R171H	ENST00000334134	NM_005247.2	171	cGc/cAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	183	554	11	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18576957	18576957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	91	595	0	ENST00000266497.5:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000266497		789	Gcc/Acc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50482355	50482355	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	41	638	3	ENST00000394963.4:c.711del	p.Phe237LeufsTer5	p.F237Lfs*5	ENST00000394963	NM_003076.4	236	Ttt/tt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	129	719	4	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
POLE	5426	MSKCC	GRCh37	12	133210891	133210891	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	143	768	0	ENST00000320574.5:c.5885A>G	p.Glu1962Gly	p.E1962G	ENST00000320574	NM_006231.2	1962	gAg/gGg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912301	32912301	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	91	588	0	ENST00000380152.3:c.3811del	p.Ser1271GlnfsTer5	p.S1271Qfs*5	ENST00000380152		1270	gTt/gt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950876	32950876	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	161	579	0	ENST00000380152.3:c.8702G>C	p.Gly2901Ala	p.G2901A	ENST00000380152		2901	gGt/gCt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103525620	103525620	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149859074		P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	23	404	0	ENST00000355739.4:c.2891G>A	p.Arg964Gln	p.R964Q	ENST00000355739	NM_000123.3	964	cGg/cAg																																																																														
MGA	23269	MSKCC	GRCh37	15	42019469	42019469	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	103	745	1	ENST00000219905.7:c.3525del	p.Thr1176ArgfsTer8	p.T1176Rfs*8	ENST00000219905	NM_001164273.1	1174	atC/at																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	38	602	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	103	568	3	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639398	3639398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	83	795	1	ENST00000294008.3:c.4241del	p.Pro1414HisfsTer36	p.P1414Hfs*36	ENST00000294008	NM_032444.2	1414	cCa/ca																																																																														
CYLD	1540	MSKCC	GRCh37	16	50785567	50785567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	152	796	0	ENST00000398568.2:c.557T>C	p.Leu186Pro	p.L186P	ENST00000398568	NM_001042412.1	186	cTt/cCt																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33446128	33446128	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	91	452	0	ENST00000335858.7:c.144+2T>C		p.X48_splice	ENST00000335858	NM_133629.2	48																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	197	690	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	336	686	3	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56772462	56772462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	154	676	1	ENST00000337432.4:c.316G>A	p.Ala106Thr	p.A106T	ENST00000337432	NM_058216.2	106	Gca/Aca																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	44	796	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
BCL2	596	MSKCC	GRCh37	18	60985776	60985776	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	19	291	1	ENST00000333681.4:c.124del	p.Ala42ProfsTer54	p.A42Pfs*54	ENST00000333681		42	Gcc/cc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221294	1221294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	44	721	1	ENST00000326873.7:c.817G>A	p.Ala273Thr	p.A273T	ENST00000326873	NM_000455.4	273	Gcc/Acc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612392	1612392	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	139	880	0	ENST00000344749.5:c.1627A>G	p.Arg543Gly	p.R543G	ENST00000344749	NM_001136139.2	543	Agg/Ggg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4090693	4090693	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	136	817	0	ENST00000262948.5:c.1106T>C	p.Ile369Thr	p.I369T	ENST00000262948	NM_030662.3	369	aTc/aCc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231328	5231328	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	72	490	0	ENST00000357368.4:c.2148C>G	p.Asp716Glu	p.D716E	ENST00000357368	NM_002850.3	716	gaC/gaG																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11151994	11151994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	47	426	0	ENST00000344626.4:c.4182G>T	p.Glu1394Asp	p.E1394D	ENST00000344626	NM_003072.3	1394	gaG/gaT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303086	15303086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	129	997	0	ENST00000263388.2:c.364C>T	p.Pro122Ser	p.P122S	ENST00000263388	NM_000435.2	122	Ccc/Tcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213971	36213971	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	133	949	2	ENST00000222270.7:c.2801del	p.Gly934GlufsTer52	p.G934Efs*52	ENST00000222270	NM_014727.1	933	Ggg/gg																																																																														
CIC	23152	MSKCC	GRCh37	19	42794440	42794441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	157	1028	1	ENST00000575354.2:c.1526dup	p.Leu510ThrfsTer4	p.L510Tfs*4	ENST00000575354	NM_015125.3	507	cgc/cgCc																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	13	367	3	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467164	25467164	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	86	540	1	ENST00000264709.3:c.1711del	p.Ala571LeufsTer80	p.A571Lfs*80	ENST00000264709	NM_175629.2	571	Gct/ct																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	111	549	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735376	204735376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	48	306	0	ENST00000302823.3:c.177G>C	p.Glu59Asp	p.E59D	ENST00000302823	NM_005214.4	59	gaG/gaC																																																																														
IDH1	3417	MSKCC	GRCh37	2	209116262	209116263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs754375602		P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	45	325	1	ENST00000345146.2:c.13dup	p.Ile5AsnfsTer13	p.I5Nfs*13	ENST00000345146	NM_005896.2	5	atc/aAtc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793431	242793431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	37	725	1	ENST00000334409.5:c.646G>A	p.Val216Met	p.V216M	ENST00000334409	NM_005018.2	216	Gtg/Atg																																																																														
SRC	6714	MSKCC	GRCh37	20	36026137	36026137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	35	883	3	ENST00000358208.4:c.739G>A	p.Val247Met	p.V247M	ENST00000358208		247	Gtg/Atg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306638	41306638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	137	822	0	ENST00000373198.4:c.1021G>A	p.Asp341Asn	p.D341N	ENST00000373198	NM_133170.3	341	Gac/Aac																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268332	46268332	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	22	392	1	ENST00000371998.3:c.2719C>T	p.Arg907Ter	p.R907*	ENST00000371998		907	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	193	437	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067242	37067242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	126	353	0	ENST00000231790.2:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000231790	NM_000249.3	385	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	57	388	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535430	66535430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	31	396	0	ENST00000273854.3:c.31C>T	p.Arg11Cys	p.R11C	ENST00000273854	NM_004439.5	11	Cgc/Tgc																																																																														
TET2	54790	MSKCC	GRCh37	4	106162508	106162508	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	55	270	0	ENST00000380013.4:c.3426del	p.Asp1143MetfsTer9	p.D1143Mfs*9	ENST00000380013	NM_001127208.2	1141	gAa/ga																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081569	143081569	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	104	631	0	ENST00000262992.4:c.1505del	p.Pro502GlnfsTer2	p.P502Qfs*2	ENST00000262992	NM_001101669.1	502	cCa/ca																																																																														
TERT	7015	MSKCC	GRCh37	5	1294328	1294328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	26	604	0	ENST00000310581.5:c.673G>T	p.Gly225Trp	p.G225W	ENST00000310581	NM_198253.2	225	Ggg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1294665	1294665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	106	485	4	ENST00000310581.5:c.336del	p.Glu113ArgfsTer15	p.E113Rfs*15	ENST00000310581	NM_198253.2	112	ccC/cc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31424571	31424571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	139	663	0	ENST00000344624.3:c.3224G>A	p.Arg1075His	p.R1075H	ENST00000344624		1075	cGc/cAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	178	653	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131972877	131972877	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	93	330	0	ENST00000265335.6:c.3460A>G	p.Thr1154Ala	p.T1154A	ENST00000265335		1154	Acc/Gcc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509368	149509368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	94	633	1	ENST00000261799.4:c.1531C>T	p.Arg511Cys	p.R511C	ENST00000261799	NM_002609.3	511	Cgc/Tgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047181	180047181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	102	683	0	ENST00000261937.6:c.2534T>C	p.Leu845Pro	p.L845P	ENST00000261937	NM_182925.4	845	cTg/cCg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047947	180047947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	194	819	1	ENST00000261937.6:c.2228C>T	p.Ala743Val	p.A743V	ENST00000261937	NM_182925.4	743	gCg/gTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057557	180057557	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	119	685	0	ENST00000261937.6:c.398G>T	p.Arg133Ile	p.R133I	ENST00000261937	NM_182925.4	133	aGa/aTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680818	30680818	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	31	633	0	ENST00000376406.3:c.901A>G	p.Thr301Ala	p.T301A	ENST00000376406	NM_014641.2	301	Aca/Gca																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324935	31324935	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	55	384	0	ENST00000412585.2:c.1A>G	p.Met1?	p.M1?	ENST00000412585	NM_005514.6	1	Atg/Gtg																																																																														
STK19	8859	MSKCC	GRCh37	6	31947330	31947330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	78	447	0	ENST00000375331.2:c.803C>T	p.Thr268Met	p.T268M	ENST00000375331	NM_004197.1	268	aCg/aTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	43	686	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508169	106508169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	32	213	0	ENST00000359195.3:c.163G>A	p.Glu55Lys	p.E55K	ENST00000359195	NM_002649.2	55	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	122	426	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485975	8485975	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	90	488	1	ENST00000356435.5:c.2842A>G	p.Asn948Asp	p.N948D	ENST00000356435		948	Aat/Gat																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	87	529	0	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	30	640	3	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1327757	1327757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	175	779	0	ENST00000381566.1:c.124G>A	p.Val42Met	p.V42M	ENST00000381566		42	Gtg/Atg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045477	47045477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	27	288	0	ENST00000329236.7:c.2210G>A	p.Arg737Gln	p.R737Q	ENST00000329236	NM_001204466.1	737	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	341	541	2	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	151	344	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	124	515	0	ENST00000361445.4:c.5930C>G	p.Thr1977Arg	p.T1977R	ENST00000361445	NM_004958.3	1977	aCa/aGa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245380	153245380	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	304	638	0	ENST00000281708.4:c.1811A>C	p.Lys604Thr	p.K604T	ENST00000281708	NM_033632.3	604	aAa/aCa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119791	70119791	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	141	643	0	ENST00000245479.2:c.793C>T	p.Gln265Ter	p.Q265*	ENST00000245479	NM_000346.3	265	Cag/Tag																																																																														
CIC	23152	MSKCC	GRCh37	19	42795334	42795334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	87	630	0	ENST00000575354.2:c.2414C>T	p.Pro805Leu	p.P805L	ENST00000575354	NM_015125.3	805	cCa/cTa																																																																														
MST1	4485	MSKCC	GRCh37	3	49723366	49723366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	92	490	0	ENST00000449682.2:c.1177C>T	p.Arg393Cys	p.R393C	ENST00000449682	NM_020998.3	393	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860314	151860314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	101	513	0	ENST00000262189.6:c.10348C>A	p.Gln3450Lys	p.Q3450K	ENST00000262189	NM_170606.2	3450	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	257	685	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206818	36206818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	188	534	0	ENST00000300305.3:c.694C>T	p.Arg232Trp	p.R232W	ENST00000300305		232	Cgg/Tgg																																																																														
AXL	558	MSKCC	GRCh37	19	41744449	41744449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143593613		P-0035921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	268	754	1	ENST00000301178.4:c.1069C>T	p.Arg357Trp	p.R357W	ENST00000301178	NM_021913.4	357	Cgg/Tgg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88670405	88670405	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	104	403	0	ENST00000360948.2:c.1281A>C	p.Glu427Asp	p.E427D	ENST00000360948	NM_001012338.2	427	gaA/gaC																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204904	128204904	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1347	136	939	1	ENST00000341105.2:c.537A>C	p.Lys179Asn	p.K179N	ENST00000341105	NM_032638.4	179	aaA/aaC																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31508750	31508750	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	105	728	0	ENST00000344624.3:c.1565T>G	p.Leu522Arg	p.L522R	ENST00000344624		522	cTt/cGt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981997	70981997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	288	956	2	ENST00000276594.2:c.99C>A	p.Phe33Leu	p.F33L	ENST00000276594	NM_024504.3	33	ttC/ttA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8375994	8375994	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	101	335	0	ENST00000356435.5:c.4603T>G	p.Leu1535Val	p.L1535V	ENST00000356435		1535	Tta/Gta																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	85	656	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	101	727	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47612306	47612309	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0035922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	46	417	0	ENST00000263735.4:c.862_865del	p.Ile288ProfsTer14	p.I288Pfs*14	ENST00000263735	NM_002354.2	287	gTTATt/gt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52598124	52598125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	153	760	0	ENST00000394830.3:c.3741dup	p.Gly1248ArgfsTer10	p.G1248Rfs*10	ENST00000394830	NM_018313.4	1247	-/A																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040940	47040941	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0035922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	97	1050	0	ENST00000329236.7:c.1239_1240del	p.Ser414AspfsTer25	p.S414Dfs*25	ENST00000329236	NM_001204466.1	412	tcTGtg/tctg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0035923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	101	344	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0035923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	124	710	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692980	89692980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	92	554	0	ENST00000371953.3:c.464A>G	p.Tyr155Cys	p.Y155C	ENST00000371953	NM_000314.4	155	tAt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	93	549	0	ENST00000263967.3:c.311C>G	p.Pro104Arg	p.P104R	ENST00000263967	NM_006218.2	104	cCa/cGa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	69	324	0	ENST00000349496.5:c.109T>G	p.Ser37Ala	p.S37A	ENST00000349496	NM_001904.3	37	Tct/Gct																																																																														
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	90	823	0	ENST00000227507.2:c.857C>G	p.Thr286Arg	p.T286R	ENST00000227507	NM_053056.2	286	aCa/aGa																																																																														
MSI2	124540	MSKCC	GRCh37	17	55752420	55752420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	54	847	0	ENST00000284073.2:c.878C>A	p.Ser293Tyr	p.S293Y	ENST00000284073	NM_138962.2	293	tCc/tAc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158626896	158626896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	110	595	2	ENST00000263640.3:c.774G>T	p.Arg258Ser	p.R258S	ENST00000263640	NM_001105.4	258	agG/agT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	107	586	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	337	642	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134884864	134884864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	135	564	0	ENST00000398015.3:c.1640C>T	p.Ala547Val	p.A547V	ENST00000398015	NM_004441.4	547	gCg/gTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502244	157502244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	255	469	2	ENST00000346085.5:c.3277G>A	p.Val1093Met	p.V1093M	ENST00000346085	NM_020732.3	1093	Gtg/Atg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911641	114911642	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0035926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	35	392	0	ENST00000543371.1:c.1161_1161+1dup		p.R387fs	ENST00000543371	NM_001198531.1	387	agg/aGGgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29652947	29652947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	105	524	0	ENST00000358273.4:c.4945G>A	p.Gly1649Arg	p.G1649R	ENST00000358273	NM_001042492.2	1649	Ggg/Agg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	62	822	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	536	818	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	242	291	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790156	40790156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	124	583	0	ENST00000373198.4:c.2575C>A	p.Gln859Lys	p.Q859K	ENST00000373198	NM_133170.3	859	Cag/Aag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435658	18435658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143896492		P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	59	289	0	ENST00000266497.5:c.643G>A	p.Gly215Arg	p.G215R	ENST00000266497		215	Gga/Aga																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62325812	62325812	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141782041		P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1309	191	580	0	ENST00000508582.2:c.3152C>T	p.Pro1051Leu	p.P1051L	ENST00000508582		1051	cCc/cTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416769	416769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	94	400	0	ENST00000399788.2:c.3781C>T	p.Arg1261Trp	p.R1261W	ENST00000399788	NM_001042603.1	1261	Cgg/Tgg																																																																														
AR	367	MSKCC	GRCh37	X	66765653	66765653	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1731	113	961	0	ENST00000374690.3:c.665A>T	p.Lys222Met	p.K222M	ENST00000374690	NM_000044.3	222	aAg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0036022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	50	758	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013032-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	303	505	1	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0013032-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	360	607	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860080	57860080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013032-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	174	549	0	ENST00000228682.2:c.820G>A	p.Gly274Ser	p.G274S	ENST00000228682	NM_005269.2	274	Ggc/Agc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278062	18278062	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013032-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			604	371	515	0	ENST00000222254.8:c.1682A>C	p.Asn561Thr	p.N561T	ENST00000222254	NM_005027.3	561	aAc/aCc																																																																														
APC	324	MSKCC	GRCh37	5	112175866	112175867	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTCCAGTTCAGGAAAATGACAATGGGAATGAAA			P-0013032-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	65	164	0	ENST00000257430.4:c.4577_4610dup	p.Glu1538SerfsTer6	p.E1538Sfs*6	ENST00000257430	NM_000038.5	1525	-/CCTCCAGTTCAGGAAAATGACAATGGGAATGAAA																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866452	42866506	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TTCCGGTTGGTATCCATGGTTTTCATAGTAAGGTCCAATAGCTGGTGGTGACCCC	TTCCGGTTGGTATCCATGGTTTTCATAGTAAGGTCCAATAGCTGGTGGTGACCCC	-			P-0013032-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			883	171	687	0	ENST00000398585.3:c.127-1_180del		p.X43_splice	ENST00000398585	NM_001135099.1	43																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38060573	38060573	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013032-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			725	403	547	0	ENST00000250448.2:c.1416delC	p.Ter473SerfsTer11	p.*473Sfs*11	ENST00000250448	NM_004496.3	472	tcC/tc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433010	49433028	+	frameshift_variant	Frame_Shift_Del	DEL	GTTCACATCCATAGAGGAA	GTTCACATCCATAGAGGAA	-			P-0013032-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	273	422	0	ENST00000301067.7:c.8343_8361del	p.Ser2782AlafsTer5	p.S2782Afs*5	ENST00000301067	NM_003482.3	2781	ccTTCCTCTATGGATGTGAAC/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	156	635	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79950727	79950728	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGCCCC			P-0026810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	14	245	1	ENST00000265081.6:c.195_203dupGCCCCCAGC	p.Pro67_Pro69dup	p.P67_P69dup	ENST00000265081	NM_002439.4	67	gca/gCAGCGCCCCca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164010	47164010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	34	374	0	ENST00000409792.3:c.2116G>A	p.Glu706Lys	p.E706K	ENST00000409792	NM_014159.6	706	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70344860	70344860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	127	554	0	ENST00000374080.3:c.2090G>T	p.Gly697Val	p.G697V	ENST00000374080		697	gGc/gTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			198	177	413	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841488	156841488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	12	700	2	ENST00000524377.1:c.791C>T	p.Thr264Met	p.T264M	ENST00000524377	NM_002529.3	264	aCg/aTg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085885	16085885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185639773		P-0034764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	10	466	1	ENST00000281043.3:c.1061C>T	p.Ala354Val	p.A354V	ENST00000281043	NM_005378.4	354	gCg/gTg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371594	225371594	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			137	17	519	1	ENST00000264414.4:c.1010A>G	p.Asn337Ser	p.N337S	ENST00000264414	NM_003590.4	337	aAt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	66	262	0	ENST00000349496.5:c.98C>A	p.Ser33Tyr	p.S33Y	ENST00000349496	NM_001904.3	33	tCt/tAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	81	267	2	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589610	67589612	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0035823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	175	262	0	ENST00000274335.5:c.1376_1378delAAA	p.Lys459del	p.K459del	ENST00000274335		458	gAAAaa/gaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624301	89624301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	33	534	0	ENST00000371953.3:c.75G>C	p.Leu25Phe	p.L25F	ENST00000371953	NM_000314.4	25	ttG/ttC																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655389	67655389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	27	568	0	ENST00000264010.4:c.1252C>A	p.Gln418Lys	p.Q418K	ENST00000264010	NM_006565.3	418	Caa/Aaa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118997	70118998	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	126	608	0	ENST00000245479.2:c.571dup	p.Glu191GlyfsTer61	p.E191Gfs*61	ENST00000245479	NM_000346.3	190	gag/gaGg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599937	10599937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	128	596	0	ENST00000171111.5:c.1639G>A	p.Val547Ile	p.V547I	ENST00000171111	NM_203500.1	547	Gta/Ata																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106940	27106940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	81	417	0	ENST00000324856.7:c.6551C>A	p.Ala2184Asp	p.A2184D	ENST00000324856	NM_006015.4	2184	gCc/gAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106920	27106938	+	frameshift_variant	Frame_Shift_Del	DEL	GGACAGCCTGGCAGCTCGT	GGACAGCCTGGCAGCTCGT	-			P-0035823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	75	439	0	ENST00000324856.7:c.6532_6550del	p.Asp2178ProfsTer16	p.D2178Pfs*16	ENST00000324856	NM_006015.4	2177	ggGGACAGCCTGGCAGCTCGT/gg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37665978	37665978	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	58	458	0	ENST00000447079.4:c.2630A>G	p.Asp877Gly	p.D877G	ENST00000447079	NM_015083.1	877	gAt/gGt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37672062	37672062	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	57	416	0	ENST00000447079.4:c.2846+1G>T		p.X949_splice	ENST00000447079	NM_015083.1	949																																																																															
MYD88	4615	MSKCC	GRCh37	3	38180374	38180374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	132	639	0	ENST00000396334.3:c.222C>G	p.Ile74Met	p.I74M	ENST00000396334	NM_002468.4	74	atC/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	622	776	2	ENST00000269305.4:c.857A>T	p.Glu286Val	p.E286V	ENST00000269305	NM_001126112.2	286	gAa/gTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42040992	42040992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	201	645	1	ENST00000219905.7:c.5370G>T	p.Gln1790His	p.Q1790H	ENST00000219905	NM_001164273.1	1790	caG/caT																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313180	30313180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	200	690	0	ENST00000262643.3:c.874C>T	p.Leu292Phe	p.L292F	ENST00000262643	NM_001238.2	292	Ctt/Ttt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467882	50467882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	94	325	0	ENST00000331340.3:c.1117C>A	p.Leu373Met	p.L373M	ENST00000331340	NM_006060.4	373	Ctg/Atg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	247	322	0	ENST00000371953.3:c.801+1G>T		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	616	657	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
RB1	5925	MSKCC	GRCh37	13	48937055	48937055	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	515	315	0	ENST00000267163.4:c.823G>T	p.Glu275Ter	p.E275*	ENST00000267163	NM_000321.2	275	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427890	49427890	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	648	755	0	ENST00000301067.7:c.10700T>A	p.Val3567Asp	p.V3567D	ENST00000301067	NM_003482.3	3567	gTt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	48	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0035833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	86	604	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981550	201981551	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0035833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	100	743	0	ENST00000359651.3:c.466_467dup	p.Gly157GlnfsTer98	p.G157Qfs*98	ENST00000359651		155	gac/gaCCc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974766	21974766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	14	124	0	ENST00000304494.5:c.61G>C	p.Ala21Pro	p.A21P	ENST00000304494	NM_000077.4	21	Gcc/Ccc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974766	21974766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	14	124	0	ENST00000304494.5:c.61G>C	p.Ala21Pro	p.A21P	ENST00000304494	NM_000077.4	21	Gcc/Ccc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	200	499	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	206	433	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
SLX4	84464	MSKCC	GRCh37	16	3634780	3634780	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1296	311	679	0	ENST00000294008.3:c.4729G>T	p.Glu1577Ter	p.E1577*	ENST00000294008	NM_032444.2	1577	Gaa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	2171	611	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	2017	618	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246002	41246002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	204	834	0	ENST00000357654.3:c.1546G>T	p.Asp516Tyr	p.D516Y	ENST00000357654	NM_007294.3	516	Gat/Tat																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31521249	31521250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0035851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	151	666	0	ENST00000344624.3:c.926_927dup	p.Glu310LysfsTer43	p.E310Kfs*43	ENST00000344624		309	-/AA																																																																														
BCL6	604	MSKCC	GRCh37	3	187447715	187447715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	69	603	1	ENST00000232014.4:c.478C>T	p.Arg160Cys	p.R160C	ENST00000232014	NM_001130845.1	160	Cgt/Tgt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	123	628	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	474	834	0	ENST00000269305.4:c.423C>A	p.Cys141Ter	p.C141*	ENST00000269305	NM_001126112.2	141	tgC/tgA																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562142	21562142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	539	989	0	ENST00000382592.4:c.1777C>T	p.Arg593Cys	p.R593C	ENST00000382592	NM_014572.2	593	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012317	152012317	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	342	660	1	ENST00000262189.6:c.496C>T	p.Gln166Ter	p.Q166*	ENST00000262189	NM_170606.2	166	Caa/Taa																																																																														
VHL	7428	MSKCC	GRCh37	3	10188297	10188297	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	420	711	0	ENST00000256474.2:c.444delT	p.Phe148LeufsTer11	p.F148Lfs*11	ENST00000256474	NM_000551.3	147	aTt/at																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176496	123176496	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0035857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	62	195	0	ENST00000218089.9:c.462+1G>C		p.X154_splice	ENST00000218089	NM_001042749.1	154																																																																															
BAP1	8314	MSKCC	GRCh37	3	52442539	52442539	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	328	574	0	ENST00000460680.1:c.206del	p.Thr69SerfsTer3	p.T69Sfs*3	ENST00000460680	NM_004656.3	69	aCg/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	835	684	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	432	732	0	ENST00000171111.5:c.959G>T	p.Arg320Leu	p.R320L	ENST00000171111	NM_203500.1	320	cGg/cTg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278061	18278061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	187	632	0	ENST00000222254.8:c.1681A>G	p.Asn561Asp	p.N561D	ENST00000222254	NM_005027.3	561	Aac/Gac																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789646	3789646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	157	511	0	ENST00000262367.5:c.4213G>T	p.Val1405Leu	p.V1405L	ENST00000262367	NM_004380.2	1405	Gtg/Ttg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248649	59248650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	208	858	0	ENST00000371222.2:c.93dup	p.Lys32GlnfsTer75	p.K32Qfs*75	ENST00000371222	NM_002228.3	31	-/C																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076794	72076794	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145840571		P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	285	538	0	ENST00000357731.5:c.703G>A	p.Val235Met	p.V235M	ENST00000357731	NM_173808.2	235	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49439703	49439703	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	371	636	0	ENST00000301067.7:c.4741G>T	p.Glu1581Ter	p.E1581*	ENST00000301067	NM_003482.3	1581	Gag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288885	15288885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	57	176	0	ENST00000263388.2:c.3854G>C	p.Arg1285Pro	p.R1285P	ENST00000263388	NM_000435.2	1285	cGt/cCt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488750	212488750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	151	532	0	ENST00000342788.4:c.2099C>A	p.Pro700His	p.P700H	ENST00000342788	NM_005235.2	700	cCc/cAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79974863	79974863	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	284	564	1	ENST00000265081.6:c.1291G>T	p.Ala431Ser	p.A431S	ENST00000265081	NM_002439.4	431	Gcc/Tcc																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64289996	64289996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	279	468	0	ENST00000370651.3:c.439C>G	p.Leu147Val	p.L147V	ENST00000370651	NM_003463.4	147	Ctg/Gtg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106523609	106523609	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	75	287	0	ENST00000359195.3:c.2760+1G>T		p.X920_splice	ENST00000359195	NM_002649.2	920																																																																															
MYC	4609	MSKCC	GRCh37	8	128751191	128751191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	149	434	0	ENST00000377970.2:c.728A>G	p.Glu243Gly	p.E243G	ENST00000377970	NM_002467.4	243	gAg/gGg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	107	564	0	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637689	52637689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	54	547	0	ENST00000394830.3:c.2627G>A	p.Arg876His	p.R876H	ENST00000394830	NM_018313.4	876	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175372	112175372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	102	278	0	ENST00000257430.4:c.4081C>T	p.Pro1361Ser	p.P1361S	ENST00000257430	NM_000038.5	1361	Ccc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112175093	112175093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	84	244	0	ENST00000257430.4:c.3802C>T	p.Pro1268Ser	p.P1268S	ENST00000257430	NM_000038.5	1268	Cca/Tca																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661120	227661120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	143	659	1	ENST00000305123.5:c.2335G>A	p.Glu779Lys	p.E779K	ENST00000305123	NM_005544.2	779	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112174053	112174053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	125	375	0	ENST00000257430.4:c.2762C>T	p.Ala921Val	p.A921V	ENST00000257430	NM_000038.5	921	gCa/gTa																																																																														
APC	324	MSKCC	GRCh37	5	112174558	112174558	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	152	383	0	ENST00000257430.4:c.3267C>G	p.Phe1089Leu	p.F1089L	ENST00000257430	NM_000038.5	1089	ttC/ttG																																																																														
APC	324	MSKCC	GRCh37	5	112174973	112174973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	83	264	0	ENST00000257430.4:c.3682C>G	p.Gln1228Glu	p.Q1228E	ENST00000257430	NM_000038.5	1228	Cag/Gag																																																																														
APC	324	MSKCC	GRCh37	5	112175046	112175046	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	81	226	0	ENST00000257430.4:c.3755C>G	p.Ser1252Cys	p.S1252C	ENST00000257430	NM_000038.5	1252	tCt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175370	112175370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	104	273	0	ENST00000257430.4:c.4079C>T	p.Ser1360Phe	p.S1360F	ENST00000257430	NM_000038.5	1360	tCt/tTt																																																																														
APC	324	MSKCC	GRCh37	5	112175466	112175466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	186	407	0	ENST00000257430.4:c.4175C>T	p.Ser1392Leu	p.S1392L	ENST00000257430	NM_000038.5	1392	tCa/tTa																																																																														
APC	324	MSKCC	GRCh37	5	112116485	112116485	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0006766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			43	197	242	0	ENST00000257430.4:c.532-2A>T		p.X178_splice	ENST00000257430	NM_000038.5	178																																																																															
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			143	466	659	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
MRE11A	4361	MSKCC	GRCh37	11	94219175	94219175	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			722	92	493	0	ENST00000323929.3:c.229G>T	p.Glu77Ter	p.E77*	ENST00000323929	NM_005591.3	77	Gag/Tag																																																																														
BCL6	604	MSKCC	GRCh37	3	187444617	187444617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006766-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	282	534	0	ENST00000232014.4:c.1610C>T	p.Thr537Met	p.T537M	ENST00000232014	NM_001130845.1	537	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	11	37	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	47	597	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721187	61721187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	45	370	0	ENST00000401558.2:c.1087A>G	p.Thr363Ala	p.T363A	ENST00000401558	NM_003400.3	363	Act/Gct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212652820	212652820	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	52	493	1	ENST00000342788.4:c.486T>A	p.His162Gln	p.H162Q	ENST00000342788	NM_005235.2	162	caT/caA																																																																														
INHA	3623	MSKCC	GRCh37	2	220439886	220439886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	74	613	1	ENST00000243786.2:c.739C>A	p.Arg247Ser	p.R247S	ENST00000243786	NM_002191.3	247	Cgc/Agc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468494	89468494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	104	487	0	ENST00000336596.2:c.2028G>T	p.Gln676His	p.Q676H	ENST00000336596	NM_005233.5	676	caG/caT																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133578	55133578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	24	383	0	ENST00000257290.5:c.882G>T	p.Gln294His	p.Q294H	ENST00000257290	NM_006206.4	294	caG/caT																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197202	26197202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	105	950	0	ENST00000356476.2:c.277C>G	p.Leu93Val	p.L93V	ENST00000356476		93	Ctg/Gtg																																																																														
HGF	3082	MSKCC	GRCh37	7	81359019	81359019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	42	589	0	ENST00000222390.5:c.942G>T	p.Arg314Ser	p.R314S	ENST00000222390	NM_000601.4	314	agG/agT																																																																														
CDK6	1021	MSKCC	GRCh37	7	92404082	92404082	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	83	414	0	ENST00000265734.4:c.297A>T	p.Glu99Asp	p.E99D	ENST00000265734	NM_001259.6	99	gaA/gaT																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509528	106509528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	73	384	0	ENST00000359195.3:c.1522C>A	p.Pro508Thr	p.P508T	ENST00000359195	NM_002649.2	508	Cca/Aca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453075	140453075	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	102	303	0	ENST00000288602.6:c.1860G>T	p.Met620Ile	p.M620I	ENST00000288602	NM_004333.4	620	atG/atT																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94178979	94178979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	55	380	0	ENST00000323929.3:c.1864G>T	p.Asp622Tyr	p.D622Y	ENST00000323929	NM_005591.3	622	Gat/Tat																																																																														
PGR	5241	MSKCC	GRCh37	11	100998288	100998288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	23	161	1	ENST00000325455.5:c.1514C>T	p.Ala505Val	p.A505V	ENST00000325455	NM_001202474.3	505	gCc/gTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991608	72991608	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	50	591	0	ENST00000268489.5:c.2437A>T	p.Thr813Ser	p.T813S	ENST00000268489	NM_006885.3	813	Acc/Tcc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438279	56438279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	99	421	0	ENST00000407977.2:c.714G>T	p.Trp238Cys	p.W238C	ENST00000407977		238	tgG/tgT																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59934592	59934592	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	40	270	2	ENST00000259008.2:c.206G>T	p.Gly69Val	p.G69V	ENST00000259008	NM_032043.2	69	gGg/gTg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39567792	39567792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	30	360	0	ENST00000262039.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000262039	NM_002647.2	183	cGa/cAa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210472	2210472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	72	374	2	ENST00000398665.3:c.1079C>A	p.Pro360Gln	p.P360Q	ENST00000398665	NM_032482.2	360	cCa/cAa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11096009	11096009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	129	556	1	ENST00000344626.4:c.283G>T	p.Gly95Ter	p.G95*	ENST00000344626	NM_003072.3	95	Gga/Tga																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520212	9520212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	65	488	0	ENST00000353224.5:c.2057C>A	p.Ser686Tyr	p.S686Y	ENST00000353224	NM_177990.2	686	tCt/tAt																																																																														
NF2	4771	MSKCC	GRCh37	22	30064329	30064329	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	116	494	0	ENST00000338641.4:c.893A>T	p.Gln298Leu	p.Q298L	ENST00000338641	NM_000268.3	298	cAg/cTg																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123480571	123480571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	32	225	0	ENST00000371139.4:c.79G>T	p.Gly27Cys	p.G27C	ENST00000371139	NM_001114937.2	27	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	334	974	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
YAP1	10413	MSKCC	GRCh37	11	102056750	102056755	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TCCTCT	TCCTCT	-			P-0019841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	34	549	0	ENST00000282441.5:c.694_699del	p.Leu232_Pro233del	p.L232_P233del	ENST00000282441	NM_001130145.2	230	ggTCCTCTt/ggt																																																																														
NF1	4763	MSKCC	GRCh37	17	29585371	29585371	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	165	661	0	ENST00000358273.4:c.4183C>T	p.Gln1395Ter	p.Q1395*	ENST00000358273	NM_001042492.2	1395	Cag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672531	30672531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	62	647	1	ENST00000376406.3:c.4429A>G	p.Arg1477Gly	p.R1477G	ENST00000376406	NM_014641.2	1477	Aga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	517	952	2	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640527	3640527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	241	1032	0	ENST00000294008.3:c.3112G>C	p.Gly1038Arg	p.G1038R	ENST00000294008	NM_032444.2	1038	Ggg/Cgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5208380	5208380	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	144	909	0	ENST00000357368.4:c.5510G>C	p.Arg1837Pro	p.R1837P	ENST00000357368	NM_002850.3	1837	cGg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0020525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	356	890	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
DIS3	22894	MSKCC	GRCh37	13	73355045	73355045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	267	864	0	ENST00000377767.4:c.325A>G	p.Ile109Val	p.I109V	ENST00000377767	NM_014953.3	109	Atc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	138	1060	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc																																																																														
CBL	867	MSKCC	GRCh37	11	119156263	119156263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	71	571	0	ENST00000264033.4:c.1928T>C	p.Leu643Pro	p.L643P	ENST00000264033	NM_005188.3	643	cTg/cCg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349681	15349686	+	inframe_deletion	In_Frame_Del	DEL	TGCTGC	TGCTGC	-			P-0020927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	39	868	0	ENST00000263377.2:c.3888_3893del	p.Gln1299_Gln1300del	p.Q1299_Q1300del	ENST00000263377	NM_058243.2	1296	caGCAGCAa/caa																																																																														
CDH1	999	MSKCC	GRCh37	16	68863611	68863611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	203	845	0	ENST00000261769.5:c.2350C>G	p.Arg784Gly	p.R784G	ENST00000261769	NM_004360.3	784	Cgt/Ggt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164571	36164571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	163	644	1	ENST00000300305.3:c.1304C>A	p.Ala435Asp	p.A435D	ENST00000300305		435	gCc/gAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023221-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	425	638	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023221-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			676	191	818	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120484312	120484312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023221-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	92	470	0	ENST00000256646.2:c.2818G>T	p.Gly940Cys	p.G940C	ENST00000256646	NM_024408.3	940	Ggt/Tgt																																																																														
NPM1	4869	MSKCC	GRCh37	5	170817115	170817115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023221-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	37	465	0	ENST00000296930.5:c.119A>G	p.His40Arg	p.H40R	ENST00000296930	NM_002520.6	40	cAc/cGc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272959	11272959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023221-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	27	356	0	ENST00000361445.4:c.3292G>T	p.Ala1098Ser	p.A1098S	ENST00000361445	NM_004958.3	1098	Gct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035300-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	106	707	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035393-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			79	39	180	0				ENST00000310581	NM_198253.2																																																																																
RUNX1	861	MSKCC	GRCh37	21	36164509	36164509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035393-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	159	380	0	ENST00000300305.3:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000300305		456	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097737	27097737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035393-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	190	421	0	ENST00000324856.7:c.3326G>A	p.Arg1109Gln	p.R1109Q	ENST00000324856	NM_006015.4	1109	cGg/cAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590888	95590888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035393-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			161	54	339	0	ENST00000343455.3:c.1021C>T	p.His341Tyr	p.H341Y	ENST00000343455	NM_177438.2	341	Cac/Tac																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157256700	157256700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035393-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	70	201	0	ENST00000346085.5:c.2027C>T	p.Ser676Leu	p.S676L	ENST00000346085	NM_020732.3	676	tCa/tTa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0035480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	35	674	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0035480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	23	334	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	51	830	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370709	55370709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	30	572	1	ENST00000297316.4:c.11C>T	p.Pro4Leu	p.P4L	ENST00000297316	NM_022454.3	4	cCg/cTg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969932	81969932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	48	524	0	ENST00000359376.3:c.3001C>T	p.Arg1001Cys	p.R1001C	ENST00000359376	NM_002661.3	1001	Cgc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	33	553	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720805	89720805	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	15	374	0	ENST00000371953.3:c.956del	p.Thr319IlefsTer2	p.T319Ifs*2	ENST00000371953	NM_000314.4	319	aCt/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106496	27106496	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	39	733	0	ENST00000324856.7:c.6108del	p.Glu2036AspfsTer6	p.E2036Dfs*6	ENST00000324856	NM_006015.4	2036	gAa/ga																																																																														
PGR	5241	MSKCC	GRCh37	11	100962497	100962497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	50	588	0	ENST00000325455.5:c.1900C>T	p.Leu634Phe	p.L634F	ENST00000325455	NM_001202474.3	634	Ctt/Ttt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591135	67591135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	17	337	0	ENST00000274335.5:c.1728delG	p.Arg577GlufsTer5	p.R577Efs*5	ENST00000274335		576	acG/ac																																																																														
APC	324	MSKCC	GRCh37	5	112173838	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	21	365	0	ENST00000257430.4:c.2547del	p.Asp849GlufsTer12	p.D849Efs*12	ENST00000257430	NM_000038.5	849	gaT/ga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411384	63411384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149055969		P-0035480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	27	808	0	ENST00000330258.3:c.1783G>A	p.Ala595Thr	p.A595T	ENST00000330258	NM_152424.3	595	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	40	181	0				ENST00000310581	NM_198253.2																																																																																
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	122	541	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	206	724	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
SMO	6608	MSKCC	GRCh37	7	128829321	128829321	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	118	493	0	ENST00000249373.3:c.329C>T	p.Ser110Leu	p.S110L	ENST00000249373	NM_005631.4	110	tCg/tTg																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197163	26197163	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	41	473	0	ENST00000356476.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000356476		106	Gag/Cag																																																																														
TET2	54790	MSKCC	GRCh37	4	106182988	106182988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	19	252	0	ENST00000380013.4:c.4027G>C	p.Asp1343His	p.D1343H	ENST00000380013	NM_001127208.2	1343	Gat/Cat																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430381	78430381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	78	477	0	ENST00000370768.2:c.787G>A	p.Glu263Lys	p.E263K	ENST00000370768	NM_003902.3	263	Gaa/Aaa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243858938	243858938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	96	443	0	ENST00000263826.5:c.127C>G	p.Gln43Glu	p.Q43E	ENST00000263826	NM_005465.4	43	Caa/Gaa																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67201875	67201875	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	41	554	0	ENST00000312629.5:c.1075G>C	p.Asp359His	p.D359H	ENST00000312629	NM_003952.2	359	Gat/Cat																																																																														
PGR	5241	MSKCC	GRCh37	11	100998944	100998944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	77	451	1	ENST00000325455.5:c.858C>A	p.Asp286Glu	p.D286E	ENST00000325455	NM_001202474.3	286	gaC/gaA																																																																														
PGR	5241	MSKCC	GRCh37	11	100998958	100998958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	71	456	0	ENST00000325455.5:c.844C>A	p.Leu282Met	p.L282M	ENST00000325455	NM_001202474.3	282	Ctg/Atg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374313	118374313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	28	355	0	ENST00000534358.1:c.7706G>T	p.Gly2569Val	p.G2569V	ENST00000534358	NM_005933.3	2569	gGa/gTa																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100212	30100212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	55	391	0	ENST00000331968.5:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000331968	NM_002742.2	470	Gaa/Aaa																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872976	35872976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	89	417	0	ENST00000216797.5:c.256G>A	p.Glu86Lys	p.E86K	ENST00000216797	NM_020529.2	86	Gaa/Aaa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004922	16004922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	56	642	0	ENST00000268712.3:c.2332G>A	p.Glu778Lys	p.E778K	ENST00000268712	NM_006311.3	778	Gaa/Aaa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40858074	40858074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	55	652	1	ENST00000428826.2:c.1790G>A	p.Cys597Tyr	p.C597Y	ENST00000428826		597	tGc/tAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440936	56440936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	47	542	0	ENST00000407977.2:c.401C>T	p.Ala134Val	p.A134V	ENST00000407977		134	gCc/gTc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191170	2191170	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	184	636	0	ENST00000398665.3:c.424G>C	p.Asp142His	p.D142H	ENST00000398665	NM_032482.2	142	Gac/Cac																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965178	25965178	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	38	595	0	ENST00000435504.4:c.4028C>G	p.Ser1343Cys	p.S1343C	ENST00000435504		1343	tCt/tGt																																																																														
ALK	238	MSKCC	GRCh37	2	29551243	29551243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	127	516	1	ENST00000389048.3:c.1387C>A	p.Gln463Lys	p.Q463K	ENST00000389048	NM_004304.4	463	Cag/Aag																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872950	136872950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	53	317	1	ENST00000241393.3:c.548G>A	p.Arg183Lys	p.R183K	ENST00000241393	NM_003467.2	183	aGa/aAa																																																																														
CASP8	841	MSKCC	GRCh37	2	202149751	202149751	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	49	634	0	ENST00000358485.4:c.1192C>G	p.Gln398Glu	p.Q398E	ENST00000358485	NM_001080125.1	398	Cag/Gag																																																																														
TOP1	7150	MSKCC	GRCh37	20	39741503	39741503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	30	281	0	ENST00000361337.2:c.1390G>T	p.Asp464Tyr	p.D464Y	ENST00000361337	NM_003286.2	464	Gac/Tac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89444986	89444986	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	52	325	0	ENST00000336596.2:c.1307-1G>T		p.X436_splice	ENST00000336596	NM_005233.5	436																																																																															
KIT	3815	MSKCC	GRCh37	4	55575593	55575593	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	28	353	0	ENST00000288135.5:c.1119C>A	p.Tyr373Ter	p.Y373*	ENST00000288135	NM_000222.2	373	taC/taA																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176517753	176517753	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	48	620	0	ENST00000292408.4:c.363G>C	p.Leu121Phe	p.L121F	ENST00000292408	NM_213647.1	121	ttG/ttC																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151896531	151896531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	20	255	0	ENST00000262189.6:c.4106G>T	p.Gly1369Val	p.G1369V	ENST00000262189	NM_170606.2	1369	gGa/gTa																																																																														
TEK	7010	MSKCC	GRCh37	9	27206652	27206652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	51	480	0	ENST00000380036.4:c.2437C>G	p.Pro813Ala	p.P813A	ENST00000380036	NM_000459.3	813	Cct/Gct																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409911	63409911	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	18	207	0	ENST00000330258.3:c.3256C>T	p.Gln1086Ter	p.Q1086*	ENST00000330258	NM_152424.3	1086	Cag/Tag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	83	396	0	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	49047495	49047495	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	11	128	0	ENST00000267163.4:c.2490-1G>T		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
CBFB	865	MSKCC	GRCh37	16	67063312	67063312	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0035596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	81	122	0	ENST00000412916.2:c.2T>A	p.Met1?	p.M1?	ENST00000412916		1	aTg/aAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	32	405	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593604	55593609	+	inframe_deletion	In_Frame_Del	DEL	GGAAGG	GGAAGG	-			P-0035634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	221	360	0	ENST00000288135.5:c.1670_1675del	p.Trp557_Val559delinsPhe	p.W557_V559delinsF	ENST00000288135	NM_000222.2	557	tGGAAGGtt/ttt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217285	11217285	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	393	537	0	ENST00000361445.4:c.4393A>G	p.Lys1465Glu	p.K1465E	ENST00000361445	NM_004958.3	1465	Aag/Gag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265343	152265343	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	126	338	0	ENST00000206249.3:c.796A>T	p.Lys266Ter	p.K266*	ENST00000206249	NM_000125.3	266	Aaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0035635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	161	516	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0035635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	376	579	6	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	259	437	0	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554408	63554408	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	453	641	1	ENST00000307078.5:c.331T>C	p.Trp111Arg	p.W111R	ENST00000307078	NM_004655.3	111	Tgg/Cgg																																																																														
APC	324	MSKCC	GRCh37	5	112175219	112175219	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	208	246	1	ENST00000257430.4:c.3928A>T	p.Lys1310Ter	p.K1310*	ENST00000257430	NM_000038.5	1310	Aag/Tag																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047963	180047963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	413	626	0	ENST00000261937.6:c.2212G>A	p.Val738Met	p.V738M	ENST00000261937	NM_182925.4	738	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	334	605	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600378	10600378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	380	738	1	ENST00000171111.5:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000171111	NM_203500.1	493	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250862	153250862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	136	397	0	ENST00000281708.4:c.1198G>A	p.Asp400Asn	p.D400N	ENST00000281708	NM_033632.3	400	Gac/Aac																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246078861	246078861	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	175	620	0	ENST00000388985.4:c.784G>C	p.Asp262His	p.D262H	ENST00000388985		262	Gac/Cac																																																																														
CCND2	894	MSKCC	GRCh37	12	4388040	4388040	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	459	408	0	ENST00000261254.3:c.526C>G	p.Leu176Val	p.L176V	ENST00000261254	NM_001759.3	176	Ctg/Gtg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346289	89346289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	33	347	2	ENST00000301030.4:c.6661G>A	p.Val2221Met	p.V2221M	ENST00000301030	NM_001256183.1	2221	Gtg/Atg																																																																														
NF1	4763	MSKCC	GRCh37	17	29661995	29661995	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	103	422	0	ENST00000358273.4:c.5952T>A	p.Asn1984Lys	p.N1984K	ENST00000358273	NM_001042492.2	1984	aaT/aaA																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37873714	37873714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	129	537	0	ENST00000269571.5:c.1879C>T	p.Pro627Ser	p.P627S	ENST00000269571		627	Ccc/Tcc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56367740	56367740	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	251	457	0	ENST00000348428.3:c.566T>G	p.Val189Gly	p.V189G	ENST00000348428	NM_006785.3	189	gTc/gGc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24135778	24135778	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	221	418	0	ENST00000263121.7:c.265A>T	p.Thr89Ser	p.T89S	ENST00000263121	NM_003073.3	89	Acc/Tcc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259546	89259546	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	221	418	0	ENST00000336596.2:c.690T>G	p.Cys230Trp	p.C230W	ENST00000336596	NM_005233.5	230	tgT/tgG																																																																														
BCL6	604	MSKCC	GRCh37	3	187449709	187449709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	343	357	0	ENST00000232014.4:c.171C>G	p.Phe57Leu	p.F57L	ENST00000232014	NM_001130845.1	57	ttC/ttG																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541607	187541608	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	212	380	0	ENST00000441802.2:c.6132_6133delinsTT	p.Gln2044_Glu2045delinsHisTer	p.Q2044_E2045delinsH*	ENST00000441802	NM_005245.3	2044	caGGag/caTTag																																																																														
PMS2	5395	MSKCC	GRCh37	7	6043125	6043328	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTATTTGCTTCATTTCATTCATTTATTGCTCACATTTCAGAAGTACTATGACTTAGATTGGCAGCGAGACAAAACAGAATTCAGAAGCTAGAAGTTGAGATGTTGAGATAGAAAACTGAAAATAATAATGATTCCAATTAATTTTCAGAGAGGTTTCTCTAAGGGGTCAAGTGAGTGGATAAAAATATTGTATCACCTCAGTGC	CTATTTGCTTCATTTCATTCATTTATTGCTCACATTTCAGAAGTACTATGACTTAGATTGGCAGCGAGACAAAACAGAATTCAGAAGCTAGAAGTTGAGATGTTGAGATAGAAAACTGAAAATAATAATGATTCCAATTAATTTTCAGAGAGGTTTCTCTAAGGGGTCAAGTGAGTGGATAAAAATATTGTATCACCTCAGTGC	-			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	69	33	0	ENST00000265849.7:c.346_353+196del		p.X116_splice	ENST00000265849	NM_000535.5	116																																																																															
AR	367	MSKCC	GRCh37	X	66931447	66931447	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	279	238	0	ENST00000374690.3:c.2089T>A	p.Ser697Thr	p.S697T	ENST00000374690	NM_000044.3	697	Tcc/Acc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499841	8499841	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	48	306	0	ENST00000356435.5:c.2129-1G>T		p.X710_splice	ENST00000356435		710																																																																															
TP53	7157	MSKCC	GRCh37	17	7578533	7578539	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTGTT	TCTTGTT	-			P-0035645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	403	659	6	ENST00000269305.4:c.391_397del	p.Asn131CysfsTer37	p.N131Cfs*37	ENST00000269305	NM_001126112.2	131	AACAAGAtg/tg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696718	47696718	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	202	393	4	ENST00000347630.2:c.230A>G	p.Asp77Gly	p.D77G	ENST00000347630	NM_001007230.1	77	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	220	564	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	106	269	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
NUF2	83540	MSKCC	GRCh37	1	163313598	163313598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	96	211	1	ENST00000271452.3:c.745G>A	p.Glu249Lys	p.E249K	ENST00000271452	NM_145697.2	249	Gag/Aag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965427	18965427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	159	373	1	ENST00000262803.5:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000262803	NM_002911.3	392	Gcc/Acc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021674	31021674	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	53	381	1	ENST00000375687.4:c.1673A>G	p.Glu558Gly	p.E558G	ENST00000375687	NM_015338.5	558	gAa/gGa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47147565	47147566	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	101	382	0	ENST00000409792.3:c.4760_4761del	p.Lys1587ArgfsTer3	p.K1587Rfs*3	ENST00000409792	NM_014159.6	1587	aAA/a																																																																														
MST1	4485	MSKCC	GRCh37	3	49725088	49725088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	127	580	0	ENST00000449682.2:c.256A>G	p.Asn86Asp	p.N86D	ENST00000449682	NM_020998.3	86	Aac/Gac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	48	685	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11138521	11138521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	44	676	0	ENST00000344626.4:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000344626	NM_003072.3	1093	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	48881427	48881430	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-			P-0035664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	28	223	0	ENST00000267163.4:c.151_154del	p.Glu51GlnfsTer13	p.E51Qfs*13	ENST00000267163	NM_000321.2	50	gAAGAa/ga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249522	153249522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	42	565	0	ENST00000281708.4:c.1256G>T	p.Gly419Val	p.G419V	ENST00000281708	NM_033632.3	419	gGa/gTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117710794	117710794	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146130970		P-0035664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	43	383	0	ENST00000368508.3:c.1478G>A	p.Arg493His	p.R493H	ENST00000368508	NM_002944.2	493	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	147	737	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	90	327	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864315	57864315	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	126	727	0	ENST00000228682.2:c.1796delG	p.Gly599ValfsTer14	p.G599Vfs*14	ENST00000228682	NM_005269.2	598	Ggg/gg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246757	41246757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	161	683	0	ENST00000357654.3:c.791G>A	p.Ser264Asn	p.S264N	ENST00000357654	NM_007294.3	264	aGt/aAt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131953781	131953781	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	48	321	0	ENST00000265335.6:c.3184G>C	p.Glu1062Gln	p.E1062Q	ENST00000265335		1062	Gag/Cag																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056446	26056446	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	80	348	0	ENST00000343677.2:c.211T>A	p.Tyr71Asn	p.Y71N	ENST00000343677	NM_005319.3	71	Tat/Aat																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101894800	101894800	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	86	405	0	ENST00000374994.4:c.353C>A	p.Ser118Ter	p.S118*	ENST00000374994	NM_004612.2	118	tCa/tAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257167	16257167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	97	600	0	ENST00000375759.3:c.4432A>G	p.Lys1478Glu	p.K1478E	ENST00000375759	NM_015001.2	1478	Aaa/Gaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	44	275	0	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123243246	123243246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	160	1055	0	ENST00000358487.5:c.2267A>G	p.Asp756Gly	p.D756G	ENST00000358487	NM_000141.4	756	gAc/gGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	150	1019	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912023	32912023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	98	776	0	ENST00000380152.3:c.3531C>G	p.Asp1177Glu	p.D1177E	ENST00000380152		1177	gaC/gaG																																																																														
BLM	641	MSKCC	GRCh37	15	91354604	91354604	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	84	535	1	ENST00000355112.3:c.4048del	p.Thr1350LeufsTer56	p.T1350Lfs*56	ENST00000355112	NM_000057.2	1348	agA/ag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274211	10274211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	55	475	0	ENST00000330684.3:c.58G>A	p.Gly20Ser	p.G20S	ENST00000330684	NM_001134407.1	20	Ggt/Agt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	95	601	5	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	42	225	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	31	353	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40456401	40456401	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	96	781	0	ENST00000345506.4:c.1211A>C	p.Glu404Ala	p.E404A	ENST00000345506	NM_003152.3	404	gAg/gCg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437569	56437569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	92	750	0	ENST00000407977.2:c.893G>A	p.Cys298Tyr	p.C298Y	ENST00000407977		298	tGt/tAt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662571	227662571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	44	634	0	ENST00000305123.5:c.884G>A	p.Ser295Asn	p.S295N	ENST00000305123	NM_005544.2	295	aGc/aAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022443	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	35	321	0	ENST00000375687.4:c.1933_1934del	p.Gly645TrpfsTer12	p.G645Wfs*12	ENST00000375687	NM_015338.5	643	GGg/g																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265049	46265049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	76	605	0	ENST00000371998.3:c.1924del	p.Leu642Ter	p.L642*	ENST00000371998		640	tCc/tc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37042540	37042540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	79	483	0	ENST00000231790.2:c.302G>T	p.Gly101Val	p.G101V	ENST00000231790	NM_000249.3	101	gGt/gTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47125635	47125635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	95	549	0	ENST00000409792.3:c.5635C>T	p.Arg1879Cys	p.R1879C	ENST00000409792	NM_014159.6	1879	Cgc/Tgc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439783	52439783	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	92	694	0	ENST00000460680.1:c.929C>T	p.Thr310Ile	p.T310I	ENST00000460680	NM_004656.3	310	aCa/aTa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801064	1801064	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	150	1275	3	ENST00000260795.2:c.197delG	p.Gly66ValfsTer32	p.G66Vfs*32	ENST00000260795		65	Ggg/gg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803444	1803444	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199944818		P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	92	799	1	ENST00000260795.2:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000260795		238	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	29	346	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	45	318	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	55	373	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112178781	112178781	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141010008		P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	83	549	0	ENST00000257430.4:c.7490C>T	p.Ser2497Leu	p.S2497L	ENST00000257430	NM_000038.5	2497	tCg/tTg																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26021082	26021082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	76	508	0	ENST00000357647.3:c.365C>A	p.Pro122His	p.P122H	ENST00000357647	NM_003529.2	122	cCc/cAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527697	157527697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	91	771	1	ENST00000346085.5:c.5422C>T	p.Arg1808Cys	p.R1808C	ENST00000346085	NM_020732.3	1808	Cgt/Tgt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	26	361	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949775	151949775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	79	479	0	ENST00000262189.6:c.1325G>A	p.Gly442Asp	p.G442D	ENST00000262189	NM_170606.2	442	gGc/gAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390656	139390656	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	136	1075	0	ENST00000277541.6:c.7535del	p.Pro2512ArgfsTer77	p.P2512Rfs*77	ENST00000277541	NM_017617.3	2512	cCg/cg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417349	139417349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	123	867	0	ENST00000277541.6:c.695C>T	p.Thr232Ile	p.T232I	ENST00000277541	NM_017617.3	232	aCc/aTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	79	873	1	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937362	76937362	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	50	430	0	ENST00000373344.5:c.3386T>G	p.Leu1129Arg	p.L1129R	ENST00000373344	NM_000489.3	1129	cTg/cGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	18	266	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	116	811	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912416	32912416	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	40	275	0	ENST00000380152.3:c.3924A>C	p.Glu1308Asp	p.E1308D	ENST00000380152		1308	gaA/gaC																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281419	49281419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	56	880	0	ENST00000282018.3:c.466T>C	p.Trp156Arg	p.W156R	ENST00000282018	NM_020377.2	156	Tgg/Cgg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222904	5222904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	21	477	0	ENST00000357368.4:c.2899G>T	p.Val967Leu	p.V967L	ENST00000357368	NM_002850.3	967	Gtg/Ttg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443583	52443584	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGA			P-0035719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	89	423	0	ENST00000460680.1:c.105_108dup	p.Lys38GlufsTer32	p.K38Efs*32	ENST00000460680	NM_004656.3	36	-/TCAG																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374302	138374302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	200	556	0	ENST00000289153.2:c.3142G>T	p.Ala1048Ser	p.A1048S	ENST00000289153	NM_006219.2	1048	Gcg/Tcg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106547349	106547349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	100	396	0	ENST00000369096.4:c.586C>T	p.Leu196Phe	p.L196F	ENST00000369096	NM_001198.3	196	Ctt/Ttt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	138	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113272	209113272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	200	375	0	ENST00000345146.2:c.235G>A	p.Asp79Asn	p.D79N	ENST00000345146	NM_005896.2	79	Gat/Aat																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45423008	45423008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	145	362	0	ENST00000262160.6:c.120G>A	p.Trp40Ter	p.W40*	ENST00000262160	NM_005901.5	40	tgG/tgA																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5238969	5238969	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144851217		P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	19	299	0	ENST00000357368.4:c.1810G>A	p.Ala604Thr	p.A604T	ENST00000357368	NM_002850.3	604	Gcc/Acc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5239055	5239055	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185326821		P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	264	452	0	ENST00000357368.4:c.1724C>T	p.Pro575Leu	p.P575L	ENST00000357368	NM_002850.3	575	cCg/cTg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960062	134960062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	130	476	0	ENST00000398015.3:c.2419G>A	p.Val807Ile	p.V807I	ENST00000398015	NM_004441.4	807	Gtt/Att																																																																														
APC	324	MSKCC	GRCh37	5	112175172	112175172	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	133	179	0	ENST00000257430.4:c.3881delA	p.Gln1294ArgfsTer11	p.Q1294Rfs*11	ENST00000257430	NM_000038.5	1294	cAg/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	175	461	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	98	289	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108143462	108143462	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	109	443	0	ENST00000278616.4:c.3167C>G	p.Ser1056Ter	p.S1056*	ENST00000278616	NM_000051.3	1056	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	26	611	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247190	153247190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	22	303	0	ENST00000281708.4:c.1612C>T	p.Gln538Ter	p.Q538*	ENST00000281708	NM_033632.3	538	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	49054168	49054168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	15	272	0	ENST00000267163.4:c.2748G>C	p.Met916Ile	p.M916I	ENST00000267163	NM_000321.2	916	atG/atC																																																																														
AR	367	MSKCC	GRCh37	X	66765265	66765265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	14	248	0	ENST00000374690.3:c.277G>A	p.Glu93Lys	p.E93K	ENST00000374690	NM_000044.3	93	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	246	583	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991706	72991706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	116	146	1	ENST00000268489.5:c.2339C>T	p.Ala780Val	p.A780V	ENST00000268489	NM_006885.3	780	gCg/gTg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675668	86675668	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	36	226	1	ENST00000274376.6:c.2603+1G>A		p.X868_splice	ENST00000274376	NM_002890.2	868																																																																															
APC	324	MSKCC	GRCh37	5	112175331	112175332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGG			P-0035728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	76	200	0	ENST00000257430.4:c.4043_4046dup	p.His1349GlnfsTer6	p.H1349Qfs*6	ENST00000257430	NM_000038.5	1347	gcc/gcCAGGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0035737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	616	478	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0035737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	378	773	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673671	30673671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	174	772	0	ENST00000376406.3:c.3289G>A	p.Glu1097Lys	p.E1097K	ENST00000376406	NM_014641.2	1097	Gag/Aag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448571	89448571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	196	485	2	ENST00000336596.2:c.1535G>A	p.Arg512Gln	p.R512Q	ENST00000336596	NM_005233.5	512	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	154	316	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061228	38061228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	210	553	0	ENST00000250448.2:c.761del	p.Phe254SerfsTer67	p.F254Sfs*67	ENST00000250448	NM_004496.3	254	tTc/tc																																																																														
WT1	7490	MSKCC	GRCh37	11	32456351	32456351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	279	719	1	ENST00000332351.3:c.541G>A	p.Gly181Ser	p.G181S	ENST00000332351	NM_024426.4	181	Ggt/Agt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911544	32911544	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	86	338	0	ENST00000380152.3:c.3052A>T	p.Lys1018Ter	p.K1018*	ENST00000380152		1018	Aag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	101	536	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	124	648	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66905930	66905930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	55	551	0	ENST00000374690.3:c.1847G>A	p.Arg616His	p.R616H	ENST00000374690	NM_000044.3	616	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	80	267	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120528	70120528	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	91	814	0	ENST00000245479.2:c.1530A>C	p.Ter510CysextTer49	p.*510Cext*49	ENST00000245479	NM_000346.3	510	tgA/tgC																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167732	185167732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	127	598	0	ENST00000265026.3:c.1055C>G	p.Pro352Arg	p.P352R	ENST00000265026	NM_004721.4	352	cCt/cGt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148525919	148525919	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	77	620	1	ENST00000320356.2:c.538C>T	p.Gln180Ter	p.Q180*	ENST00000320356	NM_004456.4	180	Caa/Taa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25994410	25994410	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	14	323	0	ENST00000435504.4:c.404-1G>T		p.X135_splice	ENST00000435504		135																																																																															
CDC73	79577	MSKCC	GRCh37	1	193099332	193099332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	73	355	0	ENST00000367435.3:c.266C>T	p.Pro89Leu	p.P89L	ENST00000367435	NM_024529.4	89	cCt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	365	733	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193099346	193099346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	80	372	0	ENST00000367435.3:c.280C>A	p.Leu94Ile	p.L94I	ENST00000367435	NM_024529.4	94	Cta/Ata																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523043	25523043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	151	709	0	ENST00000264709.3:c.142G>T	p.Val48Leu	p.V48L	ENST00000264709	NM_175629.2	48	Gtg/Ttg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696738	176696738	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	138	390	0	ENST00000439151.2:c.5441del	p.Pro1814LeufsTer7	p.P1814Lfs*7	ENST00000439151	NM_022455.4	1813	ttC/tt																																																																														
ATRX	546	MSKCC	GRCh37	X	76854906	76854906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	52	602	0	ENST00000373344.5:c.5930C>T	p.Pro1977Leu	p.P1977L	ENST00000373344	NM_000489.3	1977	cCt/cTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	99	710	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0035754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	275	824	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0035754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	63	299	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	253	405	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	150	802	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	222	665	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	131	685	2	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	218	1080	11	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	222	1022	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	43	603	1	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716032	243716032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	109	643	0	ENST00000263826.5:c.1162C>T	p.Arg388Cys	p.R388C	ENST00000263826	NM_005465.4	388	Cgc/Tgc																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	65	646	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178095	56178095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	114	393	0	ENST00000399503.3:c.3068G>A	p.Arg1023His	p.R1023H	ENST00000399503	NM_005921.1	1023	cGc/cAc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	208	525	9	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	29	90	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																																																														
TET2	54790	MSKCC	GRCh37	4	106162524	106162524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	119	351	1	ENST00000380013.4:c.3442delT	p.Tyr1148IlefsTer4	p.Y1148Ifs*4	ENST00000380013	NM_001127208.2	1146	ccT/cc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	218	562	8	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	15	85	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16202909	16202909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	164	629	0	ENST00000375759.3:c.617G>A	p.Arg206His	p.R206H	ENST00000375759	NM_015001.2	206	cGc/cAc																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27840049	27840049	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	136	549	0	ENST00000328488.2:c.45A>T	p.Lys15Asn	p.K15N	ENST00000328488	NM_003533.2	15	aaA/aaT																																																																														
CDC73	79577	MSKCC	GRCh37	1	193094309	193094309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	149	654	1	ENST00000367435.3:c.199G>A	p.Val67Met	p.V67M	ENST00000367435	NM_024529.4	67	Gtg/Atg																																																																														
NF2	4771	MSKCC	GRCh37	22	30050708	30050708	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	113	449	0	ENST00000338641.4:c.514del	p.Arg172GlyfsTer2	p.R172Gfs*2	ENST00000338641	NM_000268.3	170	ccA/cc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257899	19257899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	174	1038	4	ENST00000162023.5:c.487G>A	p.Ala163Thr	p.A163T	ENST00000162023		163	Gcc/Acc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs765875917		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	55	397	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	218	854	7	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	205	866	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30099946	30099946	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	84	512	0	ENST00000331968.5:c.1672+2T>C		p.X558_splice	ENST00000331968	NM_002742.2	558																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	129	981	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779419	3779419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	164	1069	2	ENST00000262367.5:c.5629G>A	p.Val1877Met	p.V1877M	ENST00000262367	NM_004380.2	1877	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	121	799	3	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38631981	38631981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	76	790	1	ENST00000299084.4:c.471delT	p.Gln158SerfsTer16	p.Q158Sfs*16	ENST00000299084	NM_152594.2	156	cTt/ct																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933438	49933438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	139	853	1	ENST00000296474.3:c.2752delC	p.Leu918CysfsTer18	p.L918Cfs*18	ENST00000296474	NM_002447.2	918	Ctg/tg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286238	66286238	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	162	623	0	ENST00000273854.3:c.1448del	p.Asn483ThrfsTer18	p.N483Tfs*18	ENST00000273854	NM_004439.5	483	aAc/ac																																																																														
B2M	567	MSKCC	GRCh37	15	45007681	45007681	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	180	565	1	ENST00000558401.1:c.128T>C	p.Leu43Pro	p.L43P	ENST00000558401	NM_004048.2	43	cTg/cCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445149	49445149	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	175	873	4	ENST00000301067.7:c.2317delC	p.Gln773SerfsTer157	p.Q773Sfs*157	ENST00000301067	NM_003482.3	773	Cag/ag																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978662	70978662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	138	915	0	ENST00000276594.2:c.991G>A	p.Ala331Thr	p.A331T	ENST00000276594	NM_024504.3	331	Gcc/Acc																																																																														
LATS1	9113	MSKCC	GRCh37	6	149983136	149983136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	245	853	1	ENST00000253339.5:c.3122C>T	p.Pro1041Leu	p.P1041L	ENST00000253339		1041	cCt/cTt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	124	678	0	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																														
CASP8	841	MSKCC	GRCh37	2	202151315	202151315	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	106	491	0	ENST00000358485.4:c.1615T>C	p.Ter539ArgextTer88	p.*539Rext*88	ENST00000358485	NM_001080125.1	539	Tga/Cga																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026115	71026115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	199	569	0	ENST00000318789.4:c.1507C>T	p.Arg503Ter	p.R503*	ENST00000318789	NM_032682.5	503	Cga/Tga																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793888	89793888	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	149	433	0	ENST00000336032.3:c.961del	p.Thr321ArgfsTer16	p.T321Rfs*16	ENST00000336032	NM_006813.2	319	ttA/tt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821889	72821890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	82	400	1	ENST00000268489.5:c.10285dup	p.Arg3429ProfsTer2	p.R3429Pfs*2	ENST00000268489	NM_006885.3	3429	cgt/cCgt																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225480	26225480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	90	409	0	ENST00000360408.1:c.98C>T	p.Thr33Met	p.T33M	ENST00000360408	NM_003532.2	33	aCg/aTg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532613	63532613	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	201	964	0	ENST00000307078.5:c.1966C>T	p.Arg656Ter	p.R656*	ENST00000307078	NM_004655.3	656	Cga/Tga																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621901	1621901	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	137	890	0	ENST00000344749.5:c.891del	p.Gly298GlufsTer96	p.G298Efs*96	ENST00000344749	NM_001136139.2	297	ccC/cc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174884	11174884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	175	677	0	ENST00000361445.4:c.7150A>G	p.Thr2384Ala	p.T2384A	ENST00000361445	NM_004958.3	2384	Acc/Gcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023462	27023462	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	158	688	2	ENST00000324856.7:c.572del	p.Gly191AlafsTer41	p.G191Afs*41	ENST00000324856	NM_006015.4	190	Ggg/gg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845453	156845453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	142	979	0	ENST00000524377.1:c.1496A>G	p.Asp499Gly	p.D499G	ENST00000524377	NM_002529.3	499	gAt/gGt																																																																														
NUF2	83540	MSKCC	GRCh37	1	163318827	163318827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	149	452	0	ENST00000271452.3:c.1217A>G	p.Gln406Arg	p.Q406R	ENST00000271452	NM_145697.2	406	cAa/cGa																																																																														
TET1	80312	MSKCC	GRCh37	10	70412348	70412348	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	81	323	0	ENST00000373644.4:c.4458G>C	p.Lys1486Asn	p.K1486N	ENST00000373644	NM_030625.2	1486	aaG/aaC																																																																														
WT1	7490	MSKCC	GRCh37	11	32417817	32417817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	128	518	0	ENST00000332351.3:c.1235G>A	p.Ser412Asn	p.S412N	ENST00000332351	NM_024426.4	412	aGc/aAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347134	347134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200996293		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	188	1140	3	ENST00000262320.3:c.1877C>T	p.Ala626Val	p.A626V	ENST00000262320	NM_003502.3	626	gCg/gTg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396838	396838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	50	772	1	ENST00000262320.3:c.188G>A	p.Arg63His	p.R63H	ENST00000262320	NM_003502.3	63	cGc/cAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647828	3647828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	135	958	2	ENST00000294008.3:c.1336G>A	p.Ala446Thr	p.A446T	ENST00000294008	NM_032444.2	446	Gcc/Acc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67670697	67670697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	118	520	0	ENST00000264010.4:c.1942G>A	p.Ala648Thr	p.A648T	ENST00000264010	NM_006565.3	648	Gcc/Acc																																																																														
CDH1	999	MSKCC	GRCh37	16	68856089	68856089	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	141	704	0	ENST00000261769.5:c.1900del	p.Ala634ArgfsTer19	p.A634Rfs*19	ENST00000261769	NM_004360.3	633	Ggg/gg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831848	72831848	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	84	1162	1	ENST00000268489.5:c.4733A>G	p.Gln1578Arg	p.Q1578R	ENST00000268489	NM_006885.3	1578	cAa/cGa																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990690	7990690	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201575829		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	205	821	0	ENST00000319144.4:c.71T>C	p.Leu24Pro	p.L24P	ENST00000319144	NM_001139.2	24	cTg/cCg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961331	15961331	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	210	712	0	ENST00000268712.3:c.6058C>T	p.Gln2020Ter	p.Q2020*	ENST00000268712	NM_006311.3	2020	Cag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15995271	15995271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	84	695	0	ENST00000268712.3:c.2922G>T	p.Glu974Asp	p.E974D	ENST00000268712	NM_006311.3	974	gaG/gaT																																																																														
NF1	4763	MSKCC	GRCh37	17	29552242	29552242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	224	656	0	ENST00000358273.4:c.1975C>T	p.Arg659Trp	p.R659W	ENST00000358273	NM_001042492.2	659	Cgg/Tgg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63553964	63553964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	156	539	0	ENST00000307078.5:c.775G>A	p.Ala259Thr	p.A259T	ENST00000307078	NM_004655.3	259	Gcg/Acg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39620649	39620649	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	186	563	0	ENST00000262039.4:c.2047C>T	p.Gln683Ter	p.Q683*	ENST00000262039	NM_002647.2	683	Cag/Tag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2214480	2214480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	43	729	3	ENST00000398665.3:c.1808G>A	p.Arg603His	p.R603H	ENST00000398665	NM_032482.2	603	cGc/cAc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152036	11152038	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	81	531	0	ENST00000344626.4:c.4228_4230del	p.Ser1410del	p.S1410del	ENST00000344626	NM_003072.3	1408	aaATCa/aaa																																																																														
ALK	238	MSKCC	GRCh37	2	30143219	30143219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	48	758	0	ENST00000389048.3:c.307G>A	p.Gly103Arg	p.G103R	ENST00000389048	NM_004304.4	103	Ggg/Agg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702208	47702208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	174	626	0	ENST00000233146.2:c.1804C>G	p.Leu602Val	p.L602V	ENST00000233146	NM_000251.2	602	Cta/Gta																																																																														
CASP8	841	MSKCC	GRCh37	2	202131424	202131424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	153	608	0	ENST00000358485.4:c.392T>C	p.Leu131Pro	p.L131P	ENST00000358485	NM_001080125.1	131	cTg/cCg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225343002	225343002	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	95	886	0	ENST00000264414.4:c.2090A>T	p.Asp697Val	p.D697V	ENST00000264414	NM_003590.4	697	gAc/gTc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37059035	37059036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	329	574	0	ENST00000231790.2:c.832dup	p.Thr278AsnfsTer29	p.T278Nfs*29	ENST00000231790	NM_000249.3	277	gaa/gAaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268763	41268763	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	221	588	0	ENST00000349496.5:c.1005del	p.Lys335AsnfsTer10	p.K335Nfs*10	ENST00000349496	NM_001904.3	334	gAa/ga																																																																														
MST1R	4486	MSKCC	GRCh37	3	49933508	49933509	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	190	1155	0	ENST00000296474.3:c.2681_2682del	p.Val894GlyfsTer9	p.V894Gfs*9	ENST00000296474	NM_002447.2	894	gTG/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916660	178916660	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	144	446	0	ENST00000263967.3:c.47T>C	p.Met16Thr	p.M16T	ENST00000263967	NM_006218.2	16	aTg/aCg																																																																														
KDR	3791	MSKCC	GRCh37	4	55964878	55964878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	96	438	0	ENST00000263923.4:c.2359C>T	p.Arg787Trp	p.R787W	ENST00000263923	NM_002253.2	787	Cgg/Tgg																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84390219	84390219	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	195	611	0	ENST00000321945.7:c.562T>A	p.Ser188Thr	p.S188T	ENST00000321945	NM_139076.2	188	Tcc/Acc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629490	187629490	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200350035		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	281	838	1	ENST00000441802.2:c.1492G>A	p.Val498Met	p.V498M	ENST00000441802	NM_005245.3	498	Gtg/Atg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79968633	79968633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201336852		P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	169	560	1	ENST00000265081.6:c.983G>A	p.Arg328Gln	p.R328Q	ENST00000265081	NM_002439.4	328	cGg/cAg																																																																														
SESN1	27244	MSKCC	GRCh37	6	109311961	109311961	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	187	783	0	ENST00000436639.2:c.1311del	p.Lys437AsnfsTer38	p.K437Nfs*38	ENST00000436639	NM_014454.2	437	aaA/aa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005399	150005399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	70	780	0	ENST00000253339.5:c.826C>T	p.Arg276Cys	p.R276C	ENST00000253339		276	Cgc/Tgc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522481	157522481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	170	874	0	ENST00000346085.5:c.4753C>T	p.Pro1585Ser	p.P1585S	ENST00000346085	NM_020732.3	1585	Ccc/Tcc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877042	151877042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	34	519	0	ENST00000262189.6:c.7319C>A	p.Pro2440His	p.P2440H	ENST00000262189	NM_170606.2	2440	cCt/cAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151877794	151877794	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	104	372	0	ENST00000262189.6:c.7149+2T>C		p.X2383_splice	ENST00000262189	NM_170606.2	2383																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412427	63412427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	32	588	0	ENST00000330258.3:c.740C>A	p.Pro247Gln	p.P247Q	ENST00000330258	NM_152424.3	247	cCa/cAa																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	161	688	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42860345	42860345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	201	721	0	ENST00000398585.3:c.532G>A	p.Gly178Ser	p.G178S	ENST00000398585	NM_001135099.1	178	Ggc/Agc																																																																														
TET1	80312	MSKCC	GRCh37	10	70333041	70333041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	225	799	0	ENST00000373644.4:c.946G>T	p.Ala316Ser	p.A316S	ENST00000373644	NM_030625.2	316	Gct/Tct																																																																														
ATM	472	MSKCC	GRCh37	11	108127041	108127041	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	164	555	0	ENST00000278616.4:c.2224A>T	p.Lys742Ter	p.K742*	ENST00000278616	NM_000051.3	742	Aag/Tag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434584	99434585	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	130	563	2	ENST00000268035.6:c.671_672delinsTT	p.Cys224Phe	p.C224F	ENST00000268035	NM_000875.3	224	tGC/tTT																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25973220	25973220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	151	488	0	ENST00000435504.4:c.1205A>G	p.Lys402Arg	p.K402R	ENST00000435504		402	aAg/aGg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9520257	9520257	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	118	420	0	ENST00000353224.5:c.2012C>A	p.Ser671Ter	p.S671*	ENST00000353224	NM_177990.2	671	tCa/tAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76829791	76829791	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	202	555	0	ENST00000373344.5:c.6250T>G	p.Tyr2084Asp	p.Y2084D	ENST00000373344	NM_000489.3	2084	Tac/Gac																																																																														
MTOR	2475	MSKCC	GRCh37	1	11169401	11169401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	109	491	0	ENST00000361445.4:c.7474G>T	p.Ala2492Ser	p.A2492S	ENST00000361445	NM_004958.3	2492	Gcc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	63	513	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	74	902	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0035776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	20	504	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	326	1159	2	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602488	10602488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	197	947	0	ENST00000171111.5:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000171111	NM_203500.1	364	Ggc/Tgc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085656	16085656	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201115523		P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	179	723	0	ENST00000281043.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000281043	NM_005378.4	278	Gac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916788	178916788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	184	487	0	ENST00000263967.3:c.175C>T	p.His59Tyr	p.H59Y	ENST00000263967	NM_006218.2	59	Cat/Tat																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081573	143081573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	224	744	0	ENST00000262992.4:c.1501C>T	p.Pro501Ser	p.P501S	ENST00000262992	NM_001101669.1	501	Ccc/Tcc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47142964	47142964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	168	440	0	ENST00000409792.3:c.4999C>G	p.Gln1667Glu	p.Q1667E	ENST00000409792	NM_014159.6	1667	Cag/Gag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78430557	78430557	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	151	452	1	ENST00000370768.2:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000370768	NM_003902.3	245	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425664	49425664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	212	810	0	ENST00000301067.7:c.12824A>G	p.Gln4275Arg	p.Q4275R	ENST00000301067	NM_003482.3	4275	cAg/cGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434378	49434378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	307	976	1	ENST00000301067.7:c.7175C>T	p.Pro2392Leu	p.P2392L	ENST00000301067	NM_003482.3	2392	cCt/cTt																																																																														
POLE	5426	MSKCC	GRCh37	12	133240963	133240963	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	208	800	0	ENST00000320574.5:c.2554C>T	p.Gln852Ter	p.Q852*	ENST00000320574	NM_006231.2	852	Cag/Tag																																																																														
FLT1	2321	MSKCC	GRCh37	13	29001934	29001934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	218	596	1	ENST00000282397.4:c.1231C>A	p.Gln411Lys	p.Q411K	ENST00000282397	NM_002019.4	411	Cag/Aag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571433	95571433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	124	291	0	ENST00000343455.3:c.3244G>T	p.Val1082Phe	p.V1082F	ENST00000343455	NM_177438.2	1082	Gtc/Ttc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679173	88679173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	217	695	2	ENST00000360948.2:c.864C>A	p.Asn288Lys	p.N288K	ENST00000360948	NM_001012338.2	288	aaC/aaA																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647264	2647264	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	200	717	0	ENST00000342085.4:c.1542C>G	p.Phe514Leu	p.F514L	ENST00000342085	NM_002613.4	514	ttC/ttG																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858417	9858417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	216	680	1	ENST00000330684.3:c.2984C>A	p.Thr995Lys	p.T995K	ENST00000330684	NM_001134407.1	995	aCg/aAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827301	72827301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	240	938	0	ENST00000268489.5:c.9280G>T	p.Ala3094Ser	p.A3094S	ENST00000268489	NM_006885.3	3094	Gca/Tca																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16068447	16068447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	16	136	0	ENST00000268712.3:c.464C>A	p.Ala155Asp	p.A155D	ENST00000268712	NM_006311.3	155	gCt/gAt																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804307	46804307	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	59	967	0	ENST00000290295.7:c.700G>C	p.Glu234Gln	p.E234Q	ENST00000290295	NM_006361.5	234	Gag/Cag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56438235	56438235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	52	897	0	ENST00000407977.2:c.758G>A	p.Arg253Lys	p.R253K	ENST00000407977		253	aGg/aAg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59861731	59861731	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	238	458	0	ENST00000259008.2:c.1528A>T	p.Lys510Ter	p.K510*	ENST00000259008	NM_032043.2	510	Aaa/Taa																																																																														
STK11	6794	MSKCC	GRCh37	19	1220378	1220378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	296	966	0	ENST00000326873.7:c.471C>G	p.Phe157Leu	p.F157L	ENST00000326873	NM_000455.4	157	ttC/ttG																																																																														
CENPA	1058	MSKCC	GRCh37	2	27016119	27016119	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	217	613	0	ENST00000335756.4:c.395T>A	p.Ile132Asn	p.I132N	ENST00000335756	NM_001809.3	132	aTc/aAc																																																																														
CENPA	1058	MSKCC	GRCh37	2	27016121	27016122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	180	597	0	ENST00000335756.4:c.401dup	p.Leu135ProfsTer2	p.L135Pfs*2	ENST00000335756	NM_001809.3	133	cgg/cGgg																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044330	128044330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	213	768	0	ENST00000285398.2:c.1291A>G	p.Lys431Glu	p.K431E	ENST00000285398	NM_000122.1	431	Aag/Gag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248579	212248579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	281	759	0	ENST00000342788.4:c.3688C>A	p.Pro1230Thr	p.P1230T	ENST00000342788	NM_005235.2	1230	Cca/Aca																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212252683	212252683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	88	170	0	ENST00000342788.4:c.3170C>A	p.Thr1057Asn	p.T1057N	ENST00000342788	NM_005235.2	1057	aCc/aAc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225368461	225368462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	185	464	0	ENST00000264414.4:c.1284dup	p.Glu429Ter	p.E429*	ENST00000264414	NM_003590.4	428	-/T																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867502	35867502	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	95	293	0	ENST00000303115.3:c.316A>T	p.Asn106Tyr	p.N106Y	ENST00000303115	NM_002185.3	106	Aat/Tat																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867560	35867560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	70	205	0	ENST00000303115.3:c.374C>T	p.Thr125Ile	p.T125I	ENST00000303115	NM_002185.3	125	aCt/aTt																																																																														
RAD50	10111	MSKCC	GRCh37	5	131895004	131895004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	45	265	0	ENST00000265335.6:c.158G>T	p.Cys53Phe	p.C53F	ENST00000265335		53	tGt/tTt																																																																														
FYN	2534	MSKCC	GRCh37	6	112024205	112024205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	131	470	0	ENST00000368678.4:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000368678		194	Gat/Tat																																																																														
FYN	2534	MSKCC	GRCh37	6	112024214	112024214	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	119	447	0	ENST00000368678.4:c.571G>C	p.Asp191His	p.D191H	ENST00000368678		191	Gat/Cat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117684019	117684019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	207	450	0	ENST00000368508.3:c.3128C>T	p.Ala1043Val	p.A1043V	ENST00000368508	NM_002944.2	1043	gCa/gTa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005306	150005306	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	232	714	0	ENST00000253339.5:c.919A>T	p.Thr307Ser	p.T307S	ENST00000253339		307	Act/Tct																																																																														
NBN	4683	MSKCC	GRCh37	8	90971075	90971075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	272	336	0	ENST00000265433.3:c.1002G>C	p.Lys334Asn	p.K334N	ENST00000265433	NM_002485.4	334	aaG/aaC																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517947	8517947	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	194	542	0	ENST00000356435.5:c.1444T>G	p.Leu482Val	p.L482V	ENST00000356435		482	Tta/Gta																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226186	53226186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	227	438	0	ENST00000375401.3:c.2663G>T	p.Arg888Leu	p.R888L	ENST00000375401	NM_004187.3	888	cGt/cTt																																																																														
NF2	4771	MSKCC	GRCh37	22	30038262	30038277	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGTCCAGGCCAAGGTA	CGTCCAGGCCAAGGTA	TG			P-0035788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	44	484	2	ENST00000338641.4:c.435_447+3delinsTG		p.X145_splice	ENST00000338641	NM_000268.3	145																																																																															
KIT	3815	MSKCC	GRCh37	4	55575625	55575625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	28	488	0	ENST00000288135.5:c.1151G>A	p.Gly384Asp	p.G384D	ENST00000288135	NM_000222.2	384	gGc/gAc																																																																														
ATM	472	MSKCC	GRCh37	11	108175549	108175549	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	132	440	0	ENST00000278616.4:c.5644C>T	p.Arg1882Ter	p.R1882*	ENST00000278616	NM_000051.3	1882	Cga/Tga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2124282	2124282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	245	1018	1	ENST00000219476.3:c.2437G>A	p.Val813Met	p.V813M	ENST00000219476	NM_000548.3	813	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	205	938	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101026	41101026	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	72	757	0	ENST00000373198.4:c.1330T>G	p.Ser444Ala	p.S444A	ENST00000373198	NM_133170.3	444	Tcc/Gcc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	101	389	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099762	157099762	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	63	418	0	ENST00000346085.5:c.699C>G	p.Tyr233Ter	p.Y233*	ENST00000346085	NM_020732.3	233	taC/taG																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38172206	38172206	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	386	522	0	ENST00000317025.8:c.2201C>G	p.Ser734Ter	p.S734*	ENST00000317025	NM_023034.1	734	tCa/tGa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399222	139399222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	95	950	0	ENST00000277541.6:c.4921C>T	p.Pro1641Ser	p.P1641S	ENST00000277541	NM_017617.3	1641	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	481	825	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69136840	69136840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	24	336	0	ENST00000288368.4:c.4754G>A	p.Arg1585Gln	p.R1585Q	ENST00000288368	NM_024870.2	1585	cGg/cAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120510778	120510778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	299	580	0	ENST00000256646.2:c.1186A>T	p.Asn396Tyr	p.N396Y	ENST00000256646	NM_024408.3	396	Aat/Tat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	123	556	0	ENST00000304494.5:c.150+1G>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	123	556	0	ENST00000304494.5:c.150+1G>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
AMER1	139285	MSKCC	GRCh37	X	63413145	63413145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	283	342	0	ENST00000330258.3:c.22G>A	p.Ala8Thr	p.A8T	ENST00000330258	NM_152424.3	8	Gct/Act																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101712	27101712	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	404	816	0	ENST00000324856.7:c.4993+1G>T		p.X1665_splice	ENST00000324856	NM_006015.4	1665																																																																															
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	461	794	1	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89839754	89839754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	375	846	0	ENST00000389301.3:c.1939G>A	p.Glu647Lys	p.E647K	ENST00000389301	NM_000135.2	647	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855786	45855786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	265	608	0	ENST00000391945.4:c.2024G>T	p.Gly675Val	p.G675V	ENST00000391945	NM_000400.3	675	gGc/gTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41545883	41545883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	450	854	0	ENST00000263253.7:c.2498C>T	p.Ser833Leu	p.S833L	ENST00000263253	NM_001429.3	833	tCg/tTg																																																																														
RHOA	387	MSKCC	GRCh37	3	49405939	49405939	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	292	567	0	ENST00000418115.1:c.199G>C	p.Asp67His	p.D67H	ENST00000418115	NM_001664.2	67	Gat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916810	178916810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	384	540	0	ENST00000263967.3:c.197C>T	p.Ser66Phe	p.S66F	ENST00000263967	NM_006218.2	66	tCt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	229	352	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430698	181430698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	378	752	0	ENST00000325404.1:c.550C>A	p.Pro184Thr	p.P184T	ENST00000325404	NM_003106.3	184	Ccg/Acg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	175	457	1				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36651893	36651894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	49	586	0	ENST00000244741.5:c.19dup	p.Asp7GlyfsTer29	p.D7Gfs*29	ENST00000244741	NM_000389.4	5	-/G																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652070	36652087	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGGAGCGTGTGCGGGG	CTGGGAGCGTGTGCGGGG	ACACGCTC			P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	199	913	4	ENST00000244741.5:c.192_209delinsACACGCTC	p.Trp65HisfsTer80	p.W65Hfs*80	ENST00000244741	NM_000389.4	64	gcCTGGGAGCGTGTGCGGGGc/gcACACGCTCc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	296	398	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	277	222	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
NF2	4771	MSKCC	GRCh37	22	30035183	30035184	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	299	605	0	ENST00000338641.4:c.346dup	p.His116ProfsTer14	p.H116Pfs*14	ENST00000338641	NM_000268.3	115	-/C																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	101	157	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	175	543	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600393	10600393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	345	826	0	ENST00000171111.5:c.1462G>T	p.Glu488Ter	p.E488*	ENST00000171111	NM_203500.1	488	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092977	27092978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	87	309	0	ENST00000324856.7:c.2910dup	p.Gly971TrpfsTer36	p.G971Wfs*36	ENST00000324856	NM_006015.4	970	ctt/cTtt																																																																														
ATM	472	MSKCC	GRCh37	11	108235838	108235838	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	95	416	0	ENST00000278616.4:c.8880G>C	p.Trp2960Cys	p.W2960C	ENST00000278616	NM_000051.3	2960	tgG/tgC																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287398	38287398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	179	449	0	ENST00000425967.3:c.259C>G	p.Arg87Gly	p.R87G	ENST00000425967	NM_001174067.1	87	Cgc/Ggc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105588	27105590	+	missense_variant	Missense_Mutation	ONP	GTA	GTA	TTC			P-0031656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	143	487	0	ENST00000324856.7:c.5199_5201delinsTTC	p.Glu1733_Tyr1734delinsAspSer	p.E1733_Y1734delinsDS	ENST00000324856	NM_006015.4	1733	gaGTAt/gaTTCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099395	27099395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	96	688	0	ENST00000324856.7:c.3632A>G	p.Tyr1211Cys	p.Y1211C	ENST00000324856	NM_006015.4	1211	tAt/tGt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8105995	8105995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	42	520	1	ENST00000346208.3:c.815C>T	p.Pro272Leu	p.P272L	ENST00000346208		272	cCa/cTa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348710	89348710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	83	1217	0	ENST00000301030.4:c.4240G>A	p.Asp1414Asn	p.D1414N	ENST00000301030	NM_001256183.1	1414	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	332	823	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031999	26031999	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	43	423	0	ENST00000244661.2:c.290G>C	p.Cys97Ser	p.C97S	ENST00000244661	NM_003537.3	97	tGt/tCt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168617	32168618	+	missense_variant	Missense_Mutation	DNP	CA	CA	AC			P-0035556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	148	536	1	ENST00000375023.3:c.4305_4306delinsGT	p.His1435_Ala1436delinsGlnSer	p.H1435_A1436delinsQS	ENST00000375023	NM_004557.3	1435	caTGca/caGTca																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53243903	53243903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	271	772	0	ENST00000375401.3:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000375401	NM_004187.3	364	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	135	715	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	98	285	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717618	89717635	+	frameshift_variant	Frame_Shift_Del	DEL	TTTGTGGTCTGCCAGCTA	TTTGTGGTCTGCCAGCTA	C			P-0035706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	111	389	0	ENST00000371953.3:c.643_660delinsC	p.Phe215GlnfsTer22	p.F215Qfs*22	ENST00000371953	NM_000314.4	215	TTTGTGGTCTGCCAGCTA/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	276	548	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	111	252	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	187	445	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924344	112924344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	130	442	0	ENST00000351677.2:c.1290C>A	p.Ser430Arg	p.S430R	ENST00000351677	NM_002834.3	430	agC/agA																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482864	67482864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	198	474	0	ENST00000327367.4:c.1268G>C	p.Ser423Thr	p.S423T	ENST00000327367	NM_005902.3	423	aGt/aCt																																																																														
BLM	641	MSKCC	GRCh37	15	91358405	91358405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	153	583	0	ENST00000355112.3:c.4150C>G	p.His1384Asp	p.H1384D	ENST00000355112	NM_000057.2	1384	Cat/Gat																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45372034	45372034	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	298	442	0	ENST00000262160.6:c.1135G>A	p.Gly379Ser	p.G379S	ENST00000262160	NM_005901.5	379	Ggc/Agc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256820	19256820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	50	250	0	ENST00000162023.5:c.893G>A	p.Ser298Asn	p.S298N	ENST00000162023		298	aGc/aAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214710	36214710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	202	464	0	ENST00000222270.7:c.3136C>T	p.Arg1046Cys	p.R1046C	ENST00000222270	NM_014727.1	1046	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510127	187510127	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	100	419	0	ENST00000441802.2:c.13386C>G	p.Ile4462Met	p.I4462M	ENST00000441802	NM_005245.3	4462	atC/atG																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271388	26271388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	177	441	0	ENST00000305910.3:c.225C>G	p.Ile75Met	p.I75M	ENST00000305910	NM_003534.2	75	atC/atG																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412196	63412196	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	295	418	0	ENST00000330258.3:c.971C>A	p.Ser324Ter	p.S324*	ENST00000330258	NM_152424.3	324	tCa/tAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	221	535	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231437	46231437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	91	435	0	ENST00000334344.6:c.1277C>T	p.Thr426Met	p.T426M	ENST00000334344	NM_152641.2	426	aCg/aTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68847333	68847333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	287	506	0	ENST00000261769.5:c.1255G>A	p.Asp419Asn	p.D419N	ENST00000261769	NM_004360.3	419	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	379	740	1	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	369	689	0	ENST00000304494.5:c.457G>T	p.Asp153Tyr	p.D153Y	ENST00000304494	NM_000077.4	153	Gac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	369	689	0	ENST00000304494.5:c.457G>T	p.Asp153Tyr	p.D153Y	ENST00000304494	NM_000077.4	153	Gac/Tac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71949125	71949125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	151	745	1	ENST00000298229.2:c.3592G>A	p.Glu1198Lys	p.E1198K	ENST00000298229	NM_001567.3	1198	Gag/Aag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469629	25469629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	67	591	2	ENST00000264709.3:c.1139C>T	p.Ala380Val	p.A380V	ENST00000264709	NM_175629.2	380	gCg/gTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212581	36212581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	212	865	1	ENST00000222270.7:c.2332G>A	p.Ala778Thr	p.A778T	ENST00000222270	NM_014727.1	778	Gcg/Acg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11168242	11168242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	199	552	0	ENST00000361445.4:c.7630G>T	p.Gly2544Cys	p.G2544C	ENST00000361445	NM_004958.3	2544	Ggc/Tgc																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46511672	46511672	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	82	643	0	ENST00000262741.5:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000262741	NM_003629.3	369	Gag/Tag																																																																														
RET	5979	MSKCC	GRCh37	10	43615613	43615613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	44	474	0	ENST00000355710.3:c.2692G>A	p.Asp898Asn	p.D898N	ENST00000355710	NM_020975.4	898	Gat/Aat																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342983	118342983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	27	239	0	ENST00000534358.1:c.1109C>A	p.Thr370Asn	p.T370N	ENST00000534358	NM_005933.3	370	aCc/aAc																																																																														
CBL	867	MSKCC	GRCh37	11	119148501	119148501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	168	442	0	ENST00000264033.4:c.1042G>T	p.Asp348Tyr	p.D348Y	ENST00000264033	NM_005188.3	348	Gat/Tat																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18762537	18762537	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	151	373	0	ENST00000266497.5:c.4033A>C	p.Ile1345Leu	p.I1345L	ENST00000266497		1345	Ata/Cta																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415566	49415566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	74	365	0	ENST00000301067.7:c.16611C>A	p.Asn5537Lys	p.N5537K	ENST00000301067	NM_003482.3	5537	aaC/aaA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424113	49424114	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	78	769	0	ENST00000301067.7:c.13948_13949insT	p.Glu4650ValfsTer12	p.E4650Vfs*12	ENST00000301067	NM_003482.3	4650	gag/gTag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435483	49435483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	139	634	0	ENST00000301067.7:c.6189G>T	p.Lys2063Asn	p.K2063N	ENST00000301067	NM_003482.3	2063	aaG/aaT																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432048	121432048	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	95	768	0	ENST00000257555.6:c.795C>A	p.Tyr265Ter	p.Y265*	ENST00000257555		265	taC/taA																																																																														
POLE	5426	MSKCC	GRCh37	12	133208923	133208924	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	115	520	2	ENST00000320574.5:c.6307_6308delinsAT	p.Glu2103Met	p.E2103M	ENST00000320574	NM_006231.2	2103	GAg/ATg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30102088	30102088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	132	492	0	ENST00000331968.5:c.1379G>T	p.Ser460Ile	p.S460I	ENST00000331968	NM_002742.2	460	aGc/aTc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566220	95566220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	63	528	1	ENST00000343455.3:c.4103G>T	p.Arg1368Leu	p.R1368L	ENST00000343455	NM_177438.2	1368	cGc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827169	72827169	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	63	461	0	ENST00000268489.5:c.9412A>C	p.Thr3138Pro	p.T3138P	ENST00000268489	NM_006885.3	3138	Act/Cct																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	50	389	0	ENST00000342988.3:c.1529G>T	p.Gly510Val	p.G510V	ENST00000342988	NM_005359.5	510	gGa/gTa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4110507	4110507	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	67	401	0	ENST00000262948.5:c.450G>T	p.Met150Ile	p.M150I	ENST00000262948	NM_030662.3	150	atG/atT																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256700	19256700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	137	537	0	ENST00000162023.5:c.1013C>T	p.Pro338Leu	p.P338L	ENST00000162023		338	cCc/cTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47127780	47127780	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	167	420	0	ENST00000409792.3:c.5302A>G	p.Lys1768Glu	p.K1768E	ENST00000409792	NM_014159.6	1768	Aag/Gag																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119720921	119720921	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	53	491	0	ENST00000316626.5:c.254A>T	p.Lys85Met	p.K85M	ENST00000316626		85	aAg/aTg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200005	128200005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	53	627	1	ENST00000341105.2:c.1300G>T	p.Ala434Ser	p.A434S	ENST00000341105	NM_032638.4	434	Gct/Tct																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138433508	138433508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	54	441	0	ENST00000289153.2:c.1104C>G	p.Ile368Met	p.I368M	ENST00000289153	NM_006219.2	368	atC/atG																																																																														
KDR	3791	MSKCC	GRCh37	4	55955922	55955922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	106	508	0	ENST00000263923.4:c.3240A>T	p.Arg1080Ser	p.R1080S	ENST00000263923	NM_002253.2	1080	agA/agT																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467454	66467455	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	49	297	0	ENST00000273854.3:c.814_815delinsAA	p.Pro272Asn	p.P272N	ENST00000273854	NM_004439.5	272	CCc/AAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510059	187510059	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	44	422	0	ENST00000441802.2:c.13454A>C	p.Asn4485Thr	p.N4485T	ENST00000441802	NM_005245.3	4485	aAc/aCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187530997	187530997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	83	492	0	ENST00000441802.2:c.10026del	p.Val3343SerfsTer33	p.V3343Sfs*33	ENST00000441802	NM_005245.3	3342	acA/ac																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38952498	38952498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	29	301	1	ENST00000357387.3:c.2927C>T	p.Ala976Val	p.A976V	ENST00000357387	NM_152756.3	976	gCt/gTt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665508	176665508	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	159	381	0	ENST00000439151.2:c.4192G>T	p.Gly1398Ter	p.G1398*	ENST00000439151	NM_022455.4	1398	Gga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696808	176696808	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	18	217	0	ENST00000439151.2:c.5509G>C	p.Ala1837Pro	p.A1837P	ENST00000439151	NM_022455.4	1837	Gct/Cct																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004544	150004544	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	305	698	0	ENST00000253339.5:c.1681A>T	p.Lys561Ter	p.K561*	ENST00000253339		561	Aaa/Taa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419904	152419904	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	63	508	0	ENST00000206249.3:c.1591A>C	p.Lys531Gln	p.K531Q	ENST00000206249	NM_000125.3	531	Aag/Cag																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729960	41729960	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	138	589	1	ENST00000242208.4:c.569A>C	p.Glu190Ala	p.E190A	ENST00000242208	NM_002192.2	190	gAa/gCa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467850	50467850	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	182	338	0	ENST00000331340.3:c.1085A>G	p.Asn362Ser	p.N362S	ENST00000331340	NM_006060.4	362	aAc/aGc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467988	50467988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	124	352	0	ENST00000331340.3:c.1223G>C	p.Arg408Pro	p.R408P	ENST00000331340	NM_006060.4	408	cGc/cCc																																																																														
HGF	3082	MSKCC	GRCh37	7	81355239	81355239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	104	323	0	ENST00000222390.5:c.1135C>G	p.Gln379Glu	p.Q379E	ENST00000222390	NM_000601.4	379	Caa/Gaa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508883	106508883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	37	384	0	ENST00000359195.3:c.877G>C	p.Val293Leu	p.V293L	ENST00000359195	NM_002649.2	293	Gtg/Ctg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151880087	151880087	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	77	546	0	ENST00000262189.6:c.5237A>T	p.Glu1746Val	p.E1746V	ENST00000262189	NM_170606.2	1746	gAa/gTa																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5549436	5549436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	76	623	1	ENST00000397747.3:c.463T>C	p.Trp155Arg	p.W155R	ENST00000397747	NM_025239.3	155	Tgg/Cgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0035712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	349	576	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	124	450	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	22	566	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	43	648	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720677	89720677	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	21	217	0	ENST00000371953.3:c.828T>G	p.Asn276Lys	p.N276K	ENST00000371953	NM_000314.4	276	aaT/aaG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	422	905	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960072	134960072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	688	834	0	ENST00000398015.3:c.2429A>G	p.Tyr810Cys	p.Y810C	ENST00000398015	NM_004441.4	810	tAt/tGt																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45796916	45796916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	324	711	0	ENST00000372115.3:c.1372G>A	p.Gly458Ser	p.G458S	ENST00000372115	NM_001048171.1	458	Ggt/Agt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946211	71946211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	341	979	0	ENST00000298229.2:c.2467C>T	p.Leu823Phe	p.L823F	ENST00000298229	NM_001567.3	823	Ctc/Ttc																																																																														
ETV6	2120	MSKCC	GRCh37	12	12038934	12038934	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	202	340	0	ENST00000396373.4:c.1227G>C	p.Lys409Asn	p.K409N	ENST00000396373	NM_001987.4	409	aaG/aaC																																																																														
RB1	5925	MSKCC	GRCh37	13	49027162	49027162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	209	384	0	ENST00000267163.4:c.1729A>T	p.Lys577Ter	p.K577*	ENST00000267163	NM_000321.2	577	Aag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936038	178936038	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	46	71	0	ENST00000263967.3:c.1580A>G	p.Asp527Gly	p.D527G	ENST00000263967	NM_006218.2	527	gAc/gGc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521460	8521460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	335	824	0	ENST00000356435.5:c.778G>T	p.Val260Leu	p.V260L	ENST00000356435		260	Gtg/Ttg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	85	583	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0035736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	18	300	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	96	574	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	62	389	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	320	769	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	63	383	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453150	140453150	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	73	406	0	ENST00000288602.6:c.1785T>G	p.Phe595Leu	p.F595L	ENST00000288602	NM_004333.4	595	ttT/ttG																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115262339	115262339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	107	412	0	ENST00000438362.2:c.2215G>A	p.Gly739Arg	p.G739R	ENST00000438362	NM_001242891.1	739	Gga/Aga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	495130	495130	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	95	452	0	ENST00000399788.2:c.176C>G	p.Pro59Arg	p.P59R	ENST00000399788	NM_001042603.1	59	cCt/cGt																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281935	49281935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	338	817	0	ENST00000282018.3:c.982G>A	p.Ala328Thr	p.A328T	ENST00000282018	NM_020377.2	328	Gca/Aca																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805772	46805772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	299	672	0	ENST00000290295.7:c.184C>T	p.Gln62Ter	p.Q62*	ENST00000290295	NM_006361.5	62	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	84	765	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673359	30673359	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs143258964		P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	62	973	0	ENST00000376406.3:c.3601A>C	p.Thr1201Pro	p.T1201P	ENST00000376406	NM_014641.2	1201	Aca/Cca																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	53	556	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																																																														
ALK	238	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	32	651	0	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	28	570	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MET	4233	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	21	316	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	77	570	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	38	802	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	39	608	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473635	67473635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	84	721	0	ENST00000327367.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000327367	NM_005902.3	239	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680780	88680780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	57	768	0	ENST00000360948.2:c.477G>T	p.Gln159His	p.Q159H	ENST00000360948	NM_001012338.2	159	caG/caT																																																																														
RET	5979	MSKCC	GRCh37	10	43615593	43615593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	39	687	1	ENST00000355710.3:c.2672C>T	p.Ser891Leu	p.S891L	ENST00000355710	NM_020975.4	891	tCg/tTg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149447833	149447833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	45	792	0	ENST00000286301.3:c.1571C>T	p.Ser524Phe	p.S524F	ENST00000286301	NM_005211.3	524	tCc/tTc																																																																														
ATR	545	MSKCC	GRCh37	3	142281952	142281952	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	32	390	0	ENST00000350721.4:c.293-1G>T		p.X98_splice	ENST00000350721	NM_001184.3	98																																																																															
EPHB1	2047	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	30	512	2	ENST00000398015.3:c.251G>A	p.Arg84His	p.R84H	ENST00000398015	NM_004441.4	84	cGc/cAc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054649	5054649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	32	384	0	ENST00000381652.3:c.701G>A	p.Arg234His	p.R234H	ENST00000381652	NM_004972.3	234	cGc/cAc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371711	45371711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	41	481	0	ENST00000262160.6:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000262160	NM_005901.5	427	cGa/cAa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437463	110437463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	49	775	2	ENST00000375856.3:c.938C>T	p.Ala313Val	p.A313V	ENST00000375856	NM_003749.2	313	gCc/gTc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81968046	81968046	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	23	382	0	ENST00000359376.3:c.2752A>C	p.Lys918Gln	p.K918Q	ENST00000359376	NM_002661.3	918	Aag/Cag																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40458326	40458326	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	12	256	0	ENST00000345506.4:c.1541A>C	p.Lys514Thr	p.K514T	ENST00000345506	NM_003152.3	514	aAa/aCa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761400	59761400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	39	596	0	ENST00000259008.2:c.3007T>C	p.Ser1003Pro	p.S1003P	ENST00000259008	NM_032043.2	1003	Tca/Cca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245519	153245519	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	31	488	0	ENST00000281708.4:c.1672T>C	p.Ser558Pro	p.S558P	ENST00000281708	NM_033632.3	558	Tct/Cct																																																																														
APC	324	MSKCC	GRCh37	5	112178904	112178904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	27	388	0	ENST00000257430.4:c.7613G>A	p.Arg2538Lys	p.R2538K	ENST00000257430	NM_000038.5	2538	aGa/aAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140508700	140508700	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	40	625	0	ENST00000288602.6:c.600T>G	p.Ile200Met	p.I200M	ENST00000288602	NM_004333.4	200	atT/atG																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	16	340	0	ENST00000369535.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000369535	NM_002524.4	12	gGt/gCt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892272	9892272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	182	359	0	ENST00000330684.3:c.2218G>T	p.Gly740Trp	p.G740W	ENST00000330684	NM_001134407.1	740	Ggg/Tgg																																																																														
MSI2	124540	MSKCC	GRCh37	17	55335700	55335700	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	319	601	0	ENST00000284073.2:c.255G>C	p.Glu85Asp	p.E85D	ENST00000284073	NM_138962.2	85	gaG/gaC																																																																														
YES1	7525	MSKCC	GRCh37	18	724450	724450	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	265	750	0	ENST00000314574.4:c.1606C>T	p.Gln536Ter	p.Q536*	ENST00000314574	NM_005433.3	536	Cag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099982	157099993	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGC	GGCGGCGGCGGC	-			P-0035743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	155	196	0	ENST00000346085.5:c.933_944del	p.Gly316_Gly319del	p.G316_G319del	ENST00000346085	NM_020732.3	307	GGCGGCGGCGGC/-																																																																														
AGO2	27161	MSKCC	GRCh37	8	141595395	141595395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150671066		P-0035743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1719	291	441	1	ENST00000220592.5:c.38C>T	p.Ala13Val	p.A13V	ENST00000220592	NM_012154.3	13	gCg/gTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0035565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	158	436	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108142051	108142051	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	71	438	0	ENST00000278616.4:c.2999delA	p.Asn1000ThrfsTer2	p.N1000Tfs*2	ENST00000278616	NM_000051.3	999	Aaa/aa																																																																														
MED12	9968	MSKCC	GRCh37	X	70338671	70338671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	64	447	0	ENST00000374080.3:c.67G>T	p.Asp23Tyr	p.D23Y	ENST00000374080		23	Gat/Tat																																																																														
ATM	472	MSKCC	GRCh37	11	108216487	108216488	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0035565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	58	266	0	ENST00000278616.4:c.8438_8439del	p.Phe2813Ter	p.F2813*	ENST00000278616	NM_000051.3	2812	tcTTtt/tctt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246416	46246416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140500006		P-0035565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	57	266	0	ENST00000334344.6:c.4510C>T	p.Arg1504Trp	p.R1504W	ENST00000334344	NM_152641.2	1504	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	183	503	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	253	709	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RET	5979	MSKCC	GRCh37	10	43615035	43615035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142318626		P-0035573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	72	664	1	ENST00000355710.3:c.2449C>T	p.Arg817Cys	p.R817C	ENST00000355710	NM_020975.4	817	Cgc/Tgc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913920	32913920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	174	516	0	ENST00000380152.3:c.5428G>A	p.Val1810Ile	p.V1810I	ENST00000380152		1810	Gtt/Att																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670664	134670664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	163	752	1	ENST00000398015.3:c.575T>C	p.Phe192Ser	p.F192S	ENST00000398015	NM_004441.4	192	tTc/tCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579341	7579345	+	frameshift_variant	Frame_Shift_Del	DEL	AATGC	AATGC	-			P-0001768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	303	679	0	ENST00000269305.4:c.342_346del	p.Leu114PhefsTer33	p.L114Ffs*33	ENST00000269305	NM_001126112.2	114	ttGCATTct/ttct																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111886062	111886062	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183875955		P-0001768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			770	53	581	0	ENST00000341259.2:c.1684C>T	p.Arg562Trp	p.R562W	ENST00000341259	NM_005475.2	562	Cgg/Tgg																																																																														
SDHD	6392	MSKCC	GRCh37	11	111965617	111965617	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			39	13	16	0	ENST00000375549.3:c.403A>G	p.Thr135Ala	p.T135A	ENST00000375549	NM_003002.3	135	Acc/Gcc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36206898	36206898	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0001768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	137	328	0	ENST00000300305.3:c.614G>C	p.Arg205Thr	p.R205T	ENST00000300305		205	aGa/aCa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003295	143003295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			685	142	781	2	ENST00000262992.4:c.2531G>A	p.Ser844Asn	p.S844N	ENST00000262992	NM_001101669.1	844	aGt/aAt																																																																														
NPM1	4869	MSKCC	GRCh37	5	170832326	170832326	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			737	54	612	0	ENST00000296930.5:c.690A>T	p.Lys230Asn	p.K230N	ENST00000296930	NM_002520.6	230	aaA/aaT																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399916	139399916	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			725	275	783	0	ENST00000277541.6:c.4432G>C	p.Asp1478His	p.D1478H	ENST00000277541	NM_017617.3	1478	Gac/Cac																																																																														
ARAF	369	MSKCC	GRCh37	X	47430341	47430341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001768-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	89	408	0	ENST00000377045.4:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000377045	NM_001654.4	539	cCc/cGc																																																																														
HGF	3082	MSKCC	GRCh37	7	81346583	81346583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002334-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	250	444	0	ENST00000222390.5:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000222390	NM_000601.4	457	cCa/cTa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692811	89692811	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002334-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	11	309	0	ENST00000371953.3:c.295G>T	p.Glu99Ter	p.E99*	ENST00000371953	NM_000314.4	99	Gaa/Taa																																																																														
CDH1	999	MSKCC	GRCh37	16	68844170	68844170	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002334-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			194	422	732	0	ENST00000261769.5:c.758C>G	p.Thr253Ser	p.T253S	ENST00000261769	NM_004360.3	253	aCc/aGc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832391	72832391	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002334-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			90	301	462	1	ENST00000268489.5:c.4190del	p.His1397LeufsTer28	p.H1397Lfs*28	ENST00000268489	NM_006885.3	1397	cAt/ct																																																																														
SETD8	387893	MSKCC	GRCh37	12	123880935	123880935	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010920-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	174	555	0	ENST00000330479.4:c.553T>G	p.Tyr185Asp	p.Y185D	ENST00000330479	NM_020382.3	185	Tac/Gac																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266501	198266501	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010920-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			697	103	541	0	ENST00000335508.6:c.2335T>G	p.Ser779Ala	p.S779A	ENST00000335508	NM_012433.2	779	Tct/Gct																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52661328	52661328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010920-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			694	143	675	0	ENST00000394830.3:c.1502C>T	p.Ser501Phe	p.S501F	ENST00000394830	NM_018313.4	501	tCt/tTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859301	151859319	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGACTTTTTATTTTTC	AGATGACTTTTTATTTTTC	-			P-0010920-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	159	523	0	ENST00000262189.6:c.11343_11361del	p.Leu3781PhefsTer4	p.L3781Ffs*4	ENST00000262189	NM_170606.2	3781	ttGAAAAATAAAAAGTCATCT/tt																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841271	15841271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010920-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			25	339	352	1	ENST00000307771.7:c.1355G>A	p.Arg452His	p.R452H	ENST00000307771	NM_005089.3	452	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0015218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	25	479	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	52	740	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637598	52637601	+	frameshift_variant	Frame_Shift_Del	DEL	TCTC	TCTC	-			P-0015218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	42	348	0	ENST00000394830.3:c.2715_2718del	p.Glu908AsnfsTer6	p.E908Nfs*6	ENST00000394830	NM_018313.4	905	gaGAGA/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	760	655	0	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0015644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	630	490	0	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47602438	47602438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	526	481	1	ENST00000263735.4:c.491C>T	p.Thr164Ile	p.T164I	ENST00000263735	NM_002354.2	164	aCt/aTt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945099	151945099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	110	620	0	ENST00000262189.6:c.2420C>T	p.Ser807Phe	p.S807F	ENST00000262189	NM_170606.2	807	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	320	829	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15950283	15950283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	271	891	1	ENST00000268712.3:c.6661G>A	p.Gly2221Arg	p.G2221R	ENST00000268712	NM_006311.3	2221	Gga/Aga																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610087	10610087	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	307	773	1	ENST00000171111.5:c.623A>G	p.Tyr208Cys	p.Y208C	ENST00000171111	NM_203500.1	208	tAc/tGc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858216	9858225	+	protein_altering_variant	In_Frame_Del	DEL	GAAATGTCAG	GAAATGTCAG	A			P-0016359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	191	485	1	ENST00000330684.3:c.3176_3185delinsT	p.Ser1059_Ser1062delinsLeu	p.S1059_S1062delinsL	ENST00000330684	NM_001134407.1	1059	tCTGACATTTCa/tTa																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	11	644	1	ENST00000292408.4:c.1648G>A	p.Val550Met	p.V550M	ENST00000292408	NM_213647.1	550	Gtg/Atg																																																																														
ATM	472	MSKCC	GRCh37	11	108200939	108200939	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0016986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	79	265	0	ENST00000278616.4:c.7308-2A>G		p.X2436_splice	ENST00000278616	NM_000051.3	2436																																																																															
ERF	2077	MSKCC	GRCh37	19	42752938	42752941	+	frameshift_variant	Frame_Shift_Del	DEL	GTCA	GTCA	-			P-0016986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	218	982	0	ENST00000222329.4:c.1323_1326del	p.Asp442SerfsTer88	p.D442Sfs*88	ENST00000222329	NM_006494.2	441	acTGAC/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	557	569	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	176	747	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439907	56439907	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	264	463	0	ENST00000407977.2:c.685C>T	p.Pro229Ser	p.P229S	ENST00000407977		229	Ccg/Tcg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603132	48603133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0017058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	108	432	0	ENST00000342988.3:c.1434_1435dup	p.Ala479GlufsTer26	p.A479Efs*26	ENST00000342988	NM_005359.5	478	ata/atAGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	223	483	3	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0017270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	69	211	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17947965	17947965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	264	512	0	ENST00000458235.1:c.1759C>T	p.Leu587Phe	p.L587F	ENST00000458235	NM_000215.3	587	Ctc/Ttc																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309879	30309879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	204	382	0	ENST00000307677.4:c.143C>T	p.Pro48Leu	p.P48L	ENST00000307677	NM_138578.1	48	cCc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	409	542	6	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	273	611	3	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939186	36939186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			957	116	735	1	ENST00000361632.4:c.523C>A	p.Leu175Met	p.L175M	ENST00000361632		175	Ctg/Atg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81554353	81554353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	154	459	16	ENST00000298171.2:c.373C>A	p.Leu125Ile	p.L125I	ENST00000298171	NM_000369.2	125	Ctc/Atc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117746744	117746744	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	119	427	11	ENST00000368508.3:c.76C>T	p.Gln26Ter	p.Q26*	ENST00000368508	NM_002944.2	26	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140501351	140501351	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	98	288	0	ENST00000288602.6:c.721A>C	p.Thr241Pro	p.T241P	ENST00000288602	NM_004333.4	241	Acg/Ccg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974740	21974765	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCACCTCCTCTACCCGACCCCGGG	CCGCACCTCCTCTACCCGACCCCGGG	-			P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	96	322	2	ENST00000304494.5:c.62_87del	p.Ala21GlyfsTer14	p.A21Gfs*14	ENST00000304494	NM_000077.4	21	gCCCGGGGTCGGGTAGAGGAGGTGCGG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974740	21974765	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCACCTCCTCTACCCGACCCCGGG	CCGCACCTCCTCTACCCGACCCCGGG	-			P-0019077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	96	322	2	ENST00000304494.5:c.62_87del	p.Ala21GlyfsTer14	p.A21Gfs*14	ENST00000304494	NM_000077.4	21	gCCCGGGGTCGGGTAGAGGAGGTGCGG/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	102	615	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0020995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	583	712	1	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806555	1806555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	674	729	0	ENST00000260795.2:c.1271C>T	p.Ser424Phe	p.S424F	ENST00000260795		424	tCc/tTc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983121	201983122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	163	800	0	ENST00000359651.3:c.971dup	p.Met324IlefsTer147	p.M324Ifs*147	ENST00000359651		324	atg/aTtg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806582	1806582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	852	868	0	ENST00000260795.2:c.1298C>G	p.Ser433Cys	p.S433C	ENST00000260795		433	tCc/tGc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806683	1806683	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	853	814	0	ENST00000260795.2:c.1399C>G	p.Leu467Val	p.L467V	ENST00000260795		467	Ctg/Gtg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651979	36651980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	154	703	0	ENST00000244741.5:c.102dup	p.Asp35Ter	p.D35*	ENST00000244741	NM_000389.4	34	tgt/tgTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609684	117609684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	285	608	0	ENST00000368508.3:c.7015C>T	p.His2339Tyr	p.H2339Y	ENST00000368508	NM_002944.2	2339	Cac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	137	961	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RET	5979	MSKCC	GRCh37	10	43612120	43612120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	71	611	1	ENST00000355710.3:c.2225C>T	p.Thr742Met	p.T742M	ENST00000355710	NM_020975.4	742	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0021940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	166	869	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
PGR	5241	MSKCC	GRCh37	11	100998606	100998606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	114	662	0	ENST00000325455.5:c.1196G>T	p.Arg399Leu	p.R399L	ENST00000325455	NM_001202474.3	399	cGc/cTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907383	32907383	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	78	615	0	ENST00000380152.3:c.1768T>G	p.Phe590Val	p.F590V	ENST00000380152		590	Ttt/Gtt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933270	39933271	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	236	700	0	ENST00000378444.4:c.1328dupT	p.Leu443PhefsTer4	p.L443Ffs*4	ENST00000378444	NM_001123385.1	443	ttg/ttTg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933275	39933275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	244	688	1	ENST00000378444.4:c.1324G>A	p.Asp442Asn	p.D442N	ENST00000378444	NM_001123385.1	442	Gac/Aac																																																																														
SMO	6608	MSKCC	GRCh37	7	128851930	128851930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	84	719	0	ENST00000249373.3:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000249373	NM_005631.4	668	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	223	419	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	1070	727	1	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	192	750	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085971	16085971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	283	617	1	ENST00000281043.3:c.1147C>T	p.Arg383Cys	p.R383C	ENST00000281043	NM_005378.4	383	Cgc/Tgc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46733230	46733230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	177	725	0	ENST00000371975.4:c.991G>C	p.Asp331His	p.D331H	ENST00000371975	NM_003579.3	331	Gat/Cat																																																																														
POLE	5426	MSKCC	GRCh37	12	133209061	133209061	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	216	542	0	ENST00000320574.5:c.6170A>C	p.Asn2057Thr	p.N2057T	ENST00000320574	NM_006231.2	2057	aAt/aCt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170760	11170760	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	360	786	0	ENST00000344626.4:c.4808A>G	p.Glu1603Gly	p.E1603G	ENST00000344626	NM_003072.3	1603	gAg/gGg																																																																														
ALK	238	MSKCC	GRCh37	2	30143443	30143443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	259	465	0	ENST00000389048.3:c.83G>A	p.Arg28His	p.R28H	ENST00000389048	NM_004304.4	28	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921546	178921546	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	88	402	0	ENST00000263967.3:c.1028A>T	p.Tyr343Phe	p.Y343F	ENST00000263967	NM_006218.2	343	tAc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112175793	112175794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0022090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	442	351	0	ENST00000257430.4:c.4503_4504dup	p.Cys1502PhefsTer6	p.C1502Ffs*6	ENST00000257430	NM_000038.5	1501	tct/tcTTt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965639	93965639	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	113	641	0	ENST00000369303.4:c.2289T>G	p.Asn763Lys	p.N763K	ENST00000369303	NM_004440.3	763	aaT/aaG																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370918	55370918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	50	780	0	ENST00000297316.4:c.220G>C	p.Ala74Pro	p.A74P	ENST00000297316	NM_022454.3	74	Gct/Cct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	486	717	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	357	693	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	405	722	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																														
BLM	641	MSKCC	GRCh37	15	91358343	91358343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	132	539	0	ENST00000355112.3:c.4088C>T	p.Thr1363Ile	p.T1363I	ENST00000355112	NM_000057.2	1363	aCa/aTa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30954186	30954186	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0022102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	174	364	0	ENST00000375687.4:c.58-1G>A		p.X20_splice	ENST00000375687	NM_015338.5	20																																																																															
ATRX	546	MSKCC	GRCh37	X	76931760	76931760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	345	343	0	ENST00000373344.5:c.3770C>G	p.Thr1257Arg	p.T1257R	ENST00000373344	NM_000489.3	1257	aCa/aGa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274849	38274849	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779707422		P-0022148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	220	794	0	ENST00000425967.3:c.1731C>A	p.Asn577Lys	p.N577K	ENST00000425967	NM_001174067.1	577	aaC/aaA																																																																														
NF1	4763	MSKCC	GRCh37	17	29562953	29562953	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0022148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	161	777	0	ENST00000358273.4:c.3888T>G	p.Tyr1296Ter	p.Y1296*	ENST00000358273	NM_001042492.2	1296	taT/taG																																																																														
ALK	238	MSKCC	GRCh37	2	29462643	29462643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	230	1056	2	ENST00000389048.3:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000389048	NM_004304.4	753	cGg/cAg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17384932	17384932	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	222	1013	1	ENST00000359435.4:c.483del	p.Asp162ThrfsTer67	p.D162Tfs*67	ENST00000359435	NM_001033549.1	161	tCc/tc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239957	98239957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	163	607	0	ENST00000331920.6:c.1375C>G	p.Arg459Gly	p.R459G	ENST00000331920	NM_000264.3	459	Cgc/Ggc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	630	918	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NEGR1	257194	MSKCC	GRCh37	1	71873161	71873161	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	115	648	0	ENST00000357731.5:c.1033A>G	p.Ile345Val	p.I345V	ENST00000357731	NM_173808.2	345	Ata/Gta																																																																														
POLE	5426	MSKCC	GRCh37	12	133245035	133245036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0022402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	150	1174	0	ENST00000320574.5:c.2079_2080insCT	p.Lys694LeufsTer99	p.K694Lfs*99	ENST00000320574	NM_006231.2	693	-/CT																																																																														
NUP93	9688	MSKCC	GRCh37	16	56867201	56867201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	323	863	0	ENST00000308159.5:c.1420G>A	p.Ala474Thr	p.A474T	ENST00000308159	NM_014669.4	474	Gca/Aca																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66230918	66230918	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	47	586	0	ENST00000273854.3:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000273854	NM_004439.5	685	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578409	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTGGGGGCAGCGCC	TGGTGGGGGCAGCGCC	-			P-0022402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	327	913	0	ENST00000269305.4:c.521_536del	p.Arg174MetfsTer68	p.R174Mfs*68	ENST00000269305	NM_001126112.2	174	aGGCGCTGCCCCCACCAt/at																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16055293	16055293	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022714-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			91	433	511	0	ENST00000268712.3:c.809C>G	p.Ser270Ter	p.S270*	ENST00000268712	NM_006311.3	270	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022714-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	694	763	0	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																														
CBL	867	MSKCC	GRCh37	11	119146705	119146705	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022714-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	195	388	0	ENST00000264033.4:c.870-2A>T		p.X290_splice	ENST00000264033	NM_005188.3	290																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633155	3633155	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022714-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	318	772	0	ENST00000294008.3:c.5096C>G	p.Ser1699Cys	p.S1699C	ENST00000294008	NM_032444.2	1699	tCt/tGt																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858473	27858473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022714-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	161	384	0	ENST00000359303.2:c.98C>T	p.Thr33Ile	p.T33I	ENST00000359303	NM_003535.2	33	aCt/aTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433060	49433060	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	269	1015	7	ENST00000301067.7:c.8311C>T	p.Arg2771Ter	p.R2771*	ENST00000301067	NM_003482.3	2771	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576862	7576862	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	191	815	2	ENST00000269305.4:c.984del	p.Phe328LeufsTer17	p.F328Lfs*17	ENST00000269305	NM_001126112.2	328	ttC/tt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427861	49427861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	217	907	8	ENST00000301067.7:c.10729C>T	p.Gln3577Ter	p.Q3577*	ENST00000301067	NM_003482.3	3577	Caa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222966	36222966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1412	139	1175	1	ENST00000222270.7:c.5595C>G	p.Ile1865Met	p.I1865M	ENST00000222270	NM_014727.1	1865	atC/atG																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223296	36223296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1701	172	1209	3	ENST00000222270.7:c.5846C>G	p.Thr1949Arg	p.T1949R	ENST00000222270	NM_014727.1	1949	aCa/aGa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223489	36223489	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1409	101	1090	3	ENST00000222270.7:c.6042del	p.Ser2015AlafsTer25	p.S2015Afs*25	ENST00000222270	NM_014727.1	2013	atG/at																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324690	31324690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	44	255	12	ENST00000412585.2:c.118G>A	p.Gly40Ser	p.G40S	ENST00000412585	NM_005514.6	40	Ggc/Agc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324674	31324674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11546719		P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	24	293	6	ENST00000412585.2:c.134G>A	p.Arg45His	p.R45H	ENST00000412585	NM_005514.6	45	cGc/cAc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2122251	2122251	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	277	720	0	ENST00000219476.3:c.2107T>A	p.Trp703Arg	p.W703R	ENST00000219476	NM_000548.3	703	Tgg/Agg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541699	187541699	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	107	546	0	ENST00000441802.2:c.6041A>C	p.Tyr2014Ser	p.Y2014S	ENST00000441802	NM_005245.3	2014	tAt/tCt																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031885	26031885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	52	313	0	ENST00000244661.2:c.404G>T	p.Arg135Ile	p.R135I	ENST00000244661	NM_003537.3	135	aGa/aTa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323286	31323286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146555925		P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	13	168	0	ENST00000412585.2:c.703G>A	p.Ala235Thr	p.A235T	ENST00000412585	NM_005514.6	235	Gcg/Acg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289323	33289323	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	105	467	0	ENST00000374542.5:c.229C>T	p.Gln77Ter	p.Q77*	ENST00000374542	NM_001141970.1	77	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	67	828	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25973156	25973156	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	23	548	0	ENST00000435504.4:c.1269del	p.Pro424GlnfsTer2	p.P424Qfs*2	ENST00000435504		423	gtT/gt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	94	736	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	96	892	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0022815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	49	477	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
GATA1	2623	MSKCC	GRCh37	X	48651643	48651643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	63	867	1	ENST00000376670.3:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000376670	NM_002049.3	270	cGg/cAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858384	9858384	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200526162		P-0022815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	26	573	0	ENST00000330684.3:c.3017C>T	p.Ala1006Val	p.A1006V	ENST00000330684	NM_001134407.1	1006	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112176030	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	23	458	0	ENST00000257430.4:c.4741delT	p.Ser1581LeufsTer69	p.S1581Lfs*69	ENST00000257430	NM_000038.5	1580	aTt/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	434	969	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																														
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	75	401	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497638	125497638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	108	704	0	ENST00000428830.2:c.202G>A	p.Val68Ile	p.V68I	ENST00000428830	NM_001114121.2	68	Gta/Ata																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153253747	153253747	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	49	509	0	ENST00000281708.4:c.985+1G>T		p.X329_splice	ENST00000281708	NM_033632.3	329																																																																															
APC	324	MSKCC	GRCh37	5	112111417	112111417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	39	406	0	ENST00000257430.4:c.514C>T	p.Leu172Phe	p.L172F	ENST00000257430	NM_000038.5	172	Ctt/Ttt																																																																														
APC	324	MSKCC	GRCh37	5	112174188	112174189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	76	561	0	ENST00000257430.4:c.2898dup	p.Val967CysfsTer3	p.V967Cfs*3	ENST00000257430	NM_000038.5	966	agt/agTt																																																																														
MET	4233	MSKCC	GRCh37	7	116371888	116371888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	108	648	3	ENST00000397752.3:c.1367G>A	p.Gly456Glu	p.G456E	ENST00000397752	NM_000245.2	456	gGg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	228	818	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	474	853	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	338	298	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864471	57864471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	292	754	1	ENST00000228682.2:c.1948G>T	p.Ala650Ser	p.A650S	ENST00000228682	NM_005269.2	650	Gct/Tct																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959408	26959408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	447	683	0	ENST00000381527.3:c.575C>T	p.Pro192Leu	p.P192L	ENST00000381527	NM_001260.1	192	cCa/cTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29701168	29701168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	128	391	0	ENST00000358273.4:c.8515G>A	p.Val2839Met	p.V2839M	ENST00000358273	NM_001042492.2	2839	Gtg/Atg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526558	31526558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	263	860	0	ENST00000344624.3:c.482C>T	p.Pro161Leu	p.P161L	ENST00000344624		161	cCg/cTg																																																																														
TEK	7010	MSKCC	GRCh37	9	27206739	27206739	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147231791		P-0022989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	245	728	0	ENST00000380036.4:c.2524C>T	p.Arg842Cys	p.R842C	ENST00000380036	NM_000459.3	842	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579480	7579480	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	226	813	0	ENST00000269305.4:c.207del	p.Ala70LeufsTer53	p.A70Lfs*53	ENST00000269305	NM_001126112.2	69	gcT/gc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78432750	78432750	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	78	480	0	ENST00000370768.2:c.326A>C	p.Asp109Ala	p.D109A	ENST00000370768	NM_003902.3	109	gAt/gCt																																																																														
TET1	80312	MSKCC	GRCh37	10	70451462	70451462	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	101	677	0	ENST00000373644.4:c.6302T>G	p.Leu2101Trp	p.L2101W	ENST00000373644	NM_030625.2	2101	tTg/tGg																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022453	12022453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	145	999	0	ENST00000396373.4:c.559A>G	p.Thr187Ala	p.T187A	ENST00000396373	NM_001987.4	187	Acg/Gcg																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986535	36986535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	128	872	0	ENST00000354822.5:c.1154C>G	p.Ser385Trp	p.S385W	ENST00000354822	NM_001079668.2	385	tCg/tGg																																																																														
EP300	2033	MSKCC	GRCh37	22	41572477	41572477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	105	874	1	ENST00000263253.7:c.5006C>T	p.Thr1669Ile	p.T1669I	ENST00000263253	NM_001429.3	1669	aCc/aTc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978476	70978476	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	49	376	0	ENST00000276594.2:c.1177T>A	p.Ser393Thr	p.S393T	ENST00000276594	NM_024504.3	393	Tct/Act																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	331	649	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	248	766	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	68	553	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061317	38061317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	197	888	1	ENST00000250448.2:c.672C>A	p.Phe224Leu	p.F224L	ENST00000250448	NM_004496.3	224	ttC/ttA																																																																														
CASP8	841	MSKCC	GRCh37	2	202131490	202131490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	46	543	1	ENST00000358485.4:c.458G>A	p.Gly153Asp	p.G153D	ENST00000358485	NM_001080125.1	153	gGc/gAc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589753	69589753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	74	212	0	ENST00000168712.1:c.100G>A	p.Ala34Thr	p.A34T	ENST00000168712	NM_002007.2	34	Gca/Aca																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885919	111885934	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTCCCAGGGCGATC	GTCTCCCAGGGCGATC	AT			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	153	671	3	ENST00000341259.2:c.1541_1556delinsAT	p.Gly514AspfsTer27	p.G514Dfs*27	ENST00000341259	NM_005475.2	514	gGTCTCCCAGGGCGATCc/gATc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107727	30107727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	237	700	0	ENST00000331968.5:c.953A>G	p.Asn318Ser	p.N318S	ENST00000331968	NM_002742.2	318	aAc/aGc																																																																														
MAX	4149	MSKCC	GRCh37	14	65560425	65560425	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	101	380	1	ENST00000358664.4:c.171+1G>A		p.X57_splice	ENST00000358664	NM_002382.4	57																																																																															
FLCN	201163	MSKCC	GRCh37	17	17122332	17122332	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	108	446	1	ENST00000285071.4:c.1062+1G>A		p.X354_splice	ENST00000285071	NM_144997.5	354																																																																															
JAK3	3718	MSKCC	GRCh37	19	17955129	17955129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	235	883	2	ENST00000458235.1:c.98G>A	p.Arg33Gln	p.R33Q	ENST00000458235	NM_000215.3	33	cGg/cAg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18972915	18972915	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	236	844	1	ENST00000262803.5:c.2558del	p.Leu853Ter	p.L853*	ENST00000262803	NM_002911.3	852	Ttt/tt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26022405	26022405	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	134	499	0	ENST00000435504.4:c.253-1G>T		p.X85_splice	ENST00000435504		85																																																																															
IRS1	3667	MSKCC	GRCh37	2	227662116	227662116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	180	643	0	ENST00000305123.5:c.1339C>T	p.Pro447Ser	p.P447S	ENST00000305123	NM_005544.2	447	Ccg/Tcg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013713	170013713	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	123	668	0	ENST00000295797.4:c.1432C>T	p.Gln478Ter	p.Q478*	ENST00000295797	NM_002740.5	478	Caa/Taa																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902696	1902696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	241	832	0	ENST00000382891.5:c.315G>A	p.Met105Ile	p.M105I	ENST00000382891	NM_133335.3	105	atG/atA																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27777891	27777891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	79	461	1	ENST00000369163.2:c.40G>A	p.Gly14Ser	p.G14S	ENST00000369163	NM_003536.2	14	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	425	897	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	218	863	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372025	55372025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	163	821	4	ENST00000297316.4:c.715G>A	p.Ala239Thr	p.A239T	ENST00000297316	NM_022454.3	239	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873885	151873885	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	208	627	1	ENST00000262189.6:c.8653G>T	p.Glu2885Ter	p.E2885*	ENST00000262189	NM_170606.2	2885	Gaa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	152	724	0	ENST00000304494.5:c.334dup	p.Arg112ProfsTer8	p.R112Pfs*8	ENST00000304494	NM_000077.4	112	cgt/cCgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	152	724	0	ENST00000304494.5:c.334dup	p.Arg112ProfsTer8	p.R112Pfs*8	ENST00000304494	NM_000077.4	112	cgt/cCgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971023	21971024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	152	724	0	ENST00000304494.5:c.334dup	p.Arg112ProfsTer8	p.R112Pfs*8	ENST00000304494	NM_000077.4	112	cgt/cCgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	154	685	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	180	613	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630876	187630876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	53	535	0	ENST00000441802.2:c.106C>T	p.His36Tyr	p.H36Y	ENST00000441802	NM_005245.3	36	Cac/Tac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332645	153332645	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	25	600	0	ENST00000281708.4:c.311A>T	p.His104Leu	p.H104L	ENST00000281708	NM_033632.3	104	cAt/cTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117679018	117679018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	36	553	0	ENST00000368508.3:c.3803T>C	p.Ile1268Thr	p.I1268T	ENST00000368508	NM_002944.2	1268	aTt/aCt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971098	+	stop_gained	Nonsense_Mutation	ONP	CCC	CCC	ACA			P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	245	536	0	ENST00000304494.5:c.260_262delinsTGT	p.Arg87_Glu88delinsLeuTer	p.R87_E88delinsL*	ENST00000304494	NM_000077.4	87	cGGGag/cTGTag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971098	+	stop_gained	Nonsense_Mutation	ONP	CCC	CCC	ACA			P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	245	536	0	ENST00000304494.5:c.260_262delinsTGT	p.Arg87_Glu88delinsLeuTer	p.R87_E88delinsL*	ENST00000304494	NM_000077.4	87	cGGGag/cTGTag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971098	+	stop_gained	Nonsense_Mutation	ONP	CCC	CCC	ACA			P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	245	536	0	ENST00000304494.5:c.260_262delinsTGT	p.Arg87_Glu88delinsLeuTer	p.R87_E88delinsL*	ENST00000304494	NM_000077.4	87	cGGGag/cTGTag																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250354	110250354	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TCT			P-0023529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	459	768	0	ENST00000374672.4:c.321delinsAGA	p.Phe107LeufsTer8	p.F107Lfs*8	ENST00000374672	NM_004235.4	107	ttT/ttAGA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	404	710	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	156	664	0	ENST00000342988.3:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000342988	NM_005359.5	351	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	206	754	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970969	21970969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	199	623	0	ENST00000304494.5:c.389T>A	p.Leu130Gln	p.L130Q	ENST00000304494	NM_000077.4	130	cTg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970969	21970969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	199	623	0	ENST00000304494.5:c.389T>A	p.Leu130Gln	p.L130Q	ENST00000304494	NM_000077.4	130	cTg/cAg																																																																														
ATM	472	MSKCC	GRCh37	11	108160492	108160492	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	196	693	1	ENST00000278616.4:c.4400A>T	p.Asp1467Val	p.D1467V	ENST00000278616	NM_000051.3	1467	gAc/gTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157502167	157502203	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGAGAAAGCTCTGGGTCGACCGATACCTCACCTT	CAGAGAGAAAGCTCTGGGTCGACCGATACCTCACCTT	-			P-0023635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	139	517	0	ENST00000346085.5:c.3202_3238del	p.Glu1068TrpfsTer50	p.E1068Wfs*50	ENST00000346085	NM_020732.3	1067	cCAGAGAGAAAGCTCTGGGTCGACCGATACCTCACCTTc/cc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0023677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	254	696	3	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0023677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	435	1162	3	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	810	890	1	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182683523	182683523	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	264	724	3	ENST00000292782.4:c.22C>T	p.Gln8Ter	p.Q8*	ENST00000292782	NM_020640.2	8	Cag/Tag																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1957550	1957550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3738	287	1125	0	ENST00000382891.5:c.2649C>G	p.Ile883Met	p.I883M	ENST00000382891	NM_133335.3	883	atC/atG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970984	21970985	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	332	989	3	ENST00000304494.5:c.373dup	p.Asp125GlyfsTer17	p.D125Gfs*17	ENST00000304494	NM_000077.4	125	gat/gGat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970984	21970985	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	332	989	3	ENST00000304494.5:c.373dup	p.Asp125GlyfsTer17	p.D125Gfs*17	ENST00000304494	NM_000077.4	125	gat/gGat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	170	594	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133238258	133238258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	56	392	0	ENST00000320574.5:c.2719A>G	p.Asn907Asp	p.N907D	ENST00000320574	NM_006231.2	907	Aat/Gat																																																																														
CDK8	1024	MSKCC	GRCh37	13	26978183	26978183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	61	524	0	ENST00000381527.3:c.1360C>T	p.Pro454Ser	p.P454S	ENST00000381527	NM_001260.1	454	Cct/Tct																																																																														
B2M	567	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	C			P-0024048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	32	404	0	ENST00000558401.1:c.3G>C	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atC																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348247	348247	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	173	728	0	ENST00000262320.3:c.1259A>C	p.Glu420Ala	p.E420A	ENST00000262320	NM_003502.3	420	gAg/gCg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2220061	2220141	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGGGGCACCTGCTGCCCCTGACACACAGGGTTTTCTCTCTGCAGAGGAGCACCCCCAGTCCCGTGCTGCAGCCCCGTGA	CCTGGGGCACCTGCTGCCCCTGACACACAGGGTTTTCTCTCTGCAGAGGAGCACCCCCAGTCCCGTGCTGCAGCCCCGTGA	-			P-0024048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	35	277	1	ENST00000398665.3:c.2692-44_2728del		p.X898_splice	ENST00000398665	NM_032482.2	898																																																																															
SOS1	6654	MSKCC	GRCh37	2	39285858	39285858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	55	564	0	ENST00000402219.2:c.301A>G	p.Asn101Asp	p.N101D	ENST00000402219	NM_005633.3	101	Aac/Gac																																																																														
IRF4	3662	MSKCC	GRCh37	6	397222	397222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	45	290	0	ENST00000380956.4:c.607C>A	p.His203Asn	p.H203N	ENST00000380956	NM_001195286.1	203	Cac/Aac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0024117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	236	585	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0024117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	243	621	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151841843	151841843	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	99	584	0	ENST00000262189.6:c.14298A>C	p.Lys4766Asn	p.K4766N	ENST00000262189	NM_170606.2	4766	aaA/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	645	950	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	343	924	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923329	131923329	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	29	459	1	ENST00000265335.6:c.832C>T	p.Arg278Ter	p.R278*	ENST00000265335		278	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	138	242	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	158	605	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581243	48581243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	277	571	0	ENST00000342988.3:c.547C>T	p.Gln183Ter	p.Q183*	ENST00000342988	NM_005359.5	183	Cag/Tag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	332	802	1	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579394	7579394	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	375	757	1	ENST00000269305.4:c.293del	p.Pro98LeufsTer25	p.P98Lfs*25	ENST00000269305	NM_001126112.2	98	cCt/ct																																																																														
STK40	83931	MSKCC	GRCh37	1	36814310	36814310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	140	499	0	ENST00000373129.3:c.730G>A	p.Val244Met	p.V244M	ENST00000373129	NM_032017.1	244	Gtg/Atg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40727105	40727105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	260	576	0	ENST00000373198.4:c.3859A>G	p.Asn1287Asp	p.N1287D	ENST00000373198	NM_133170.3	1287	Aac/Gac																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71015123	71015123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	234	396	1	ENST00000318789.4:c.1807C>T	p.Arg603Trp	p.R603W	ENST00000318789	NM_032682.5	603	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112173971	112173972	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	94	384	0	ENST00000257430.4:c.2682_2683del	p.Ala896HisfsTer15	p.A896Hfs*15	ENST00000257430	NM_000038.5	894	GTg/g																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069031	5069031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	56	287	1	ENST00000381652.3:c.1336G>T	p.Val446Phe	p.V446F	ENST00000381652	NM_004972.3	446	Gtc/Ttc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577520	64577520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	391	459	0	ENST00000337652.1:c.62G>A	p.Arg21His	p.R21H	ENST00000337652	NM_130803.2	21	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579323	7579329	+	frameshift_variant	Frame_Shift_Del	DEL	CAGACTT	CAGACTT	-			P-0024444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	494	552	0	ENST00000269305.4:c.358_364del	p.Lys120Ter	p.K120*	ENST00000269305	NM_001126112.2	120	AAGTCTGtg/tg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577375	64577375	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	310	726	0	ENST00000337652.1:c.207del	p.Asp70ThrfsTer49	p.D70Tfs*49	ENST00000337652	NM_130803.2	69	ccC/cc																																																																														
ATM	472	MSKCC	GRCh37	11	108196789	108196789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	165	308	0	ENST00000278616.4:c.6812C>G	p.Pro2271Arg	p.P2271R	ENST00000278616	NM_000051.3	2271	cCt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	461	855	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	261	900	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427479	49427479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	261	830	2	ENST00000301067.7:c.11009G>T	p.Gly3670Val	p.G3670V	ENST00000301067	NM_003482.3	3670	gGc/gTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244590	41244590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	178	910	0	ENST00000357654.3:c.2958C>G	p.Ile986Met	p.I986M	ENST00000357654	NM_007294.3	986	atC/atG																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149505092	149505092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	304	877	2	ENST00000261799.4:c.1723G>A	p.Asp575Asn	p.D575N	ENST00000261799	NM_002609.3	575	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	186	706	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	160	835	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49441771	49441771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	111	581	0	ENST00000301067.7:c.4213C>T	p.His1405Tyr	p.H1405Y	ENST00000301067	NM_003482.3	1405	Cac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	66	583	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PAK1	5058	MSKCC	GRCh37	11	77066776	77066776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	32	492	0	ENST00000356341.3:c.709C>T	p.Arg237Trp	p.R237W	ENST00000356341	NM_002576.4	237	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108163450	108163450	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	38	608	0	ENST00000278616.4:c.4544del	p.Asn1515ThrfsTer28	p.N1515Tfs*28	ENST00000278616	NM_000051.3	1514	gAa/ga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533833	63533833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	29	497	1	ENST00000307078.5:c.1321G>A	p.Asp441Asn	p.D441N	ENST00000307078	NM_004655.3	441	Gat/Aat																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967912	93967912	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	44	553	0	ENST00000369303.4:c.2015C>G	p.Thr672Arg	p.T672R	ENST00000369303	NM_004440.3	672	aCa/aGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	143	504	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0024898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	42	733	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	226	463	1	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0024913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	1208	867	1	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	47	852	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846296	156846296	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	30	931	0	ENST00000524377.1:c.1737C>A	p.Cys579Ter	p.C579*	ENST00000524377	NM_002529.3	579	tgC/tgA																																																																														
STK11	6794	MSKCC	GRCh37	19	1219393	1219393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	20	754	0	ENST00000326873.7:c.445C>T	p.Pro149Ser	p.P149S	ENST00000326873	NM_000455.4	149	Cca/Tca																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1957431	1957431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	11	424	0	ENST00000382891.5:c.2530C>A	p.Leu844Met	p.L844M	ENST00000382891	NM_133335.3	844	Ctg/Atg																																																																														
EED	8726	MSKCC	GRCh37	11	85977249	85977256	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AAACTAAC	AAACTAAC	-			P-0025135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	16	348	0	ENST00000263360.6:c.852_859del	p.Thr285AlafsTer11	p.T285Afs*11	ENST00000263360	NM_003797.3	284	aAAACTAAC/a																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	132	507	0	ENST00000250448.2:c.754_774delAACATGTTCGAGAACGGCTGC	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																														
PGR	5241	MSKCC	GRCh37	11	100922293	100922293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149186732		P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	132	370	0	ENST00000325455.5:c.2219G>A	p.Arg740Gln	p.R740Q	ENST00000325455	NM_001202474.3	740	cGa/cAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912277	32912277	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	168	519	0	ENST00000380152.3:c.3785C>A	p.Ser1262Ter	p.S1262*	ENST00000380152		1262	tCa/tAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29685997	29685997	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	157	452	0	ENST00000358273.4:c.8124T>G	p.Phe2708Leu	p.F2708L	ENST00000358273	NM_001042492.2	2708	ttT/ttG																																																																														
KDR	3791	MSKCC	GRCh37	4	55971046	55971046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	174	554	0	ENST00000263923.4:c.1751A>G	p.Tyr584Cys	p.Y584C	ENST00000263923	NM_002253.2	584	tAc/tGc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964454	70964454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	373	625	0	ENST00000276594.2:c.1574C>G	p.Ser525Cys	p.S525C	ENST00000276594	NM_024504.3	525	tCt/tGt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964534	70964534	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	347	535	0	ENST00000276594.2:c.1494C>A	p.Phe498Leu	p.F498L	ENST00000276594	NM_024504.3	498	ttC/ttA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	85	556	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0025313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	91	561	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	116	572	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482552	56482552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	98	573	0	ENST00000267101.3:c.1009G>A	p.Gly337Arg	p.G337R	ENST00000267101	NM_001982.3	337	Ggg/Agg																																																																														
MGA	23269	MSKCC	GRCh37	15	42028697	42028697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	120	600	2	ENST00000219905.7:c.4235C>T	p.Ser1412Phe	p.S1412F	ENST00000219905	NM_001164273.1	1412	tCt/tTt																																																																														
ERF	2077	MSKCC	GRCh37	19	42753155	42753155	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	105	684	0	ENST00000222329.4:c.1109C>G	p.Ser370Cys	p.S370C	ENST00000222329	NM_006494.2	370	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	159	671	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217037	7217037	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	75	471	0	ENST00000380728.2:c.484del	p.Arg162GlyfsTer183	p.R162Gfs*183	ENST00000380728		162	Cgg/gg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874197	151874197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	72	413	0	ENST00000262189.6:c.8341A>G	p.Ile2781Val	p.I2781V	ENST00000262189	NM_170606.2	2781	Att/Gtt																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025559	1025559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1882	210	704	3	ENST00000358495.3:c.816G>A	p.Met272Ile	p.M272I	ENST00000358495	NM_134424.2	272	atG/atA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285250	212285250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	110	514	1	ENST00000342788.4:c.3051G>T	p.Met1017Ile	p.M1017I	ENST00000342788	NM_005235.2	1017	atG/atT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	597	953	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	46	255	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266063	41266316	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATA	GGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATA	-			P-0028706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	37	297	0	ENST00000349496.5:c.60_241+72del		p.X20_splice	ENST00000349496	NM_001904.3	20																																																																															
STK11	6794	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0029599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	494	615	0	ENST00000326873.7:c.290+1G>T		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																															
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0029599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	194	368	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0030702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	289	526	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
HGF	3082	MSKCC	GRCh37	7	81381513	81381514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	61	430	0	ENST00000222390.5:c.547dup	p.Glu183GlyfsTer20	p.E183Gfs*20	ENST00000222390	NM_000601.4	183	gaa/gGaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0032378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	169	521	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729106	66729106	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	123	487	0	ENST00000307102.5:c.314C>G	p.Pro105Arg	p.P105R	ENST00000307102	NM_002755.3	105	cCc/cGc																																																																														
CIC	23152	MSKCC	GRCh37	19	42788883	42788883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	95	362	0	ENST00000575354.2:c.27G>T	p.Met9Ile	p.M9I	ENST00000575354	NM_015125.3	9	atG/atT																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31945081	31945081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	252	532	0	ENST00000340398.3:c.20C>A	p.Thr7Asn	p.T7N	ENST00000340398	NM_001013699.2	7	aCt/aAt																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64290015	64290015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	263	449	1	ENST00000370651.3:c.458G>A	p.Arg153His	p.R153H	ENST00000370651	NM_003463.4	153	cGt/cAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42057117	42057117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	112	552	0	ENST00000219905.7:c.7778C>T	p.Ser2593Phe	p.S2593F	ENST00000219905	NM_001164273.1	2593	tCt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	120	337	0				ENST00000310581	NM_198253.2																																																																																
KDM6A	7403	MSKCC	GRCh37	X	44942817	44942817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	209	328	0	ENST00000377967.4:c.3397C>T	p.Gln1133Ter	p.Q1133*	ENST00000377967	NM_021140.2	1133	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0033360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	261	826	0	ENST00000269305.4:c.281C>G	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tGa																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0033360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	317	965	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2492114	2492114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	95	764	0	ENST00000355716.4:c.512C>G	p.Ser171Cys	p.S171C	ENST00000355716	NM_003820.2	171	tCt/tGt																																																																														
MGA	23269	MSKCC	GRCh37	15	41988533	41988533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	138	483	0	ENST00000219905.7:c.1325C>T	p.Ser442Phe	p.S442F	ENST00000219905	NM_001164273.1	442	tCt/tTt																																																																														
MGA	23269	MSKCC	GRCh37	15	41988785	41988785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	115	441	0	ENST00000219905.7:c.1577C>T	p.Ser526Leu	p.S526L	ENST00000219905	NM_001164273.1	526	tCa/tTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786792	3786800	+	inframe_deletion	In_Frame_Del	DEL	GGCCCAGAT	GGCCCAGAT	-			P-0033360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	111	588	0	ENST00000262367.5:c.4411_4419del	p.Ile1471_Ala1473del	p.I1471_A1473del	ENST00000262367	NM_004380.2	1471	ATCTGGGCC/-																																																																														
POLD1	5424	MSKCC	GRCh37	19	50921193	50921193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	193	824	0	ENST00000440232.2:c.3313G>A	p.Glu1105Lys	p.E1105K	ENST00000440232	NM_002691.3	1105	Gag/Aag																																																																														
RAF1	5894	MSKCC	GRCh37	3	12632314	12632314	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	159	540	0	ENST00000251849.4:c.1353G>C	p.Gln451His	p.Q451H	ENST00000251849	NM_002880.3	451	caG/caC																																																																														
SETD2	29072	MSKCC	GRCh37	3	47158149	47158150	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0033360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	69	569	0	ENST00000409792.3:c.4549_4550delinsTT	p.Gly1517Leu	p.G1517L	ENST00000409792	NM_014159.6	1517	GGg/TTg																																																																														
SESN1	27244	MSKCC	GRCh37	6	109319829	109319829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	85	569	0	ENST00000436639.2:c.859G>C	p.Asp287His	p.D287H	ENST00000436639	NM_014454.2	287	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0034038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	522	562	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910399	50910399	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	186	532	1	ENST00000440232.2:c.1654C>T	p.Gln552Ter	p.Q552*	ENST00000440232	NM_002691.3	552	Cag/Tag																																																																														
EP300	2033	MSKCC	GRCh37	22	41533661	41533661	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs142823793		P-0034038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	129	383	0	ENST00000263253.7:c.1627A>G	p.Met543Val	p.M543V	ENST00000263253	NM_001429.3	543	Atg/Gtg																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73096435	73096435	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	21	67	0	ENST00000356692.5:c.215A>C	p.Asn72Thr	p.N72T	ENST00000356692		72	aAc/aCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	856	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0015210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	295	359	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51439674	51439674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	164	299	0	ENST00000262662.1:c.239C>T	p.Ala80Val	p.A80V	ENST00000262662		80	gCa/gTa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278091	41278111	+	inframe_deletion	In_Frame_Del	DEL	CTGCTGTTTTGTTCCGAATGT	CTGCTGTTTTGTTCCGAATGT	-			P-0015210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	110	306	0	ENST00000349496.5:c.1970_1990del	p.Ala657_Ser663del	p.A657_S663del	ENST00000349496	NM_001904.3	656	gCTGCTGTTTTGTTCCGAATGTct/gct																																																																														
APC	324	MSKCC	GRCh37	5	112173668	112173668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	238	290	0	ENST00000257430.4:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000257430	NM_000038.5	793	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	232	649	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0015323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	210	643	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	94	469	2	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	67	401	0	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																																																														
STK19	8859	MSKCC	GRCh37	6	31947215	31947215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	119	368	0	ENST00000375331.2:c.688C>T	p.Pro230Ser	p.P230S	ENST00000375331	NM_004197.1	230	Ccg/Tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	155	536	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0015380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	126	508	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0015380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	84	375	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213872	66213872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	64	427	1	ENST00000273854.3:c.2558G>A	p.Arg853Gln	p.R853Q	ENST00000273854	NM_004439.5	853	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101274	27101275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	87	480	0	ENST00000324856.7:c.4559dup	p.Ala1522ArgfsTer10	p.A1522Rfs*10	ENST00000324856	NM_006015.4	1519	cag/caGg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	443560	443560	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	114	343	0	ENST00000399788.2:c.1337A>G	p.Asn446Ser	p.N446S	ENST00000399788	NM_001042603.1	446	aAt/aGt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591894	48591894	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	73	357	0	ENST00000342988.3:c.1057T>C	p.Tyr353His	p.Y353H	ENST00000342988	NM_005359.5	353	Tac/Cac																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729713	41729713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	66	414	1	ENST00000242208.4:c.816G>T	p.Lys272Asn	p.K272N	ENST00000242208	NM_002192.2	272	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	541	727	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130439	29130439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	508	714	1	ENST00000328354.6:c.271G>A	p.Ala91Thr	p.A91T	ENST00000328354	NM_007194.3	91	Gcc/Acc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275139	41275139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	199	334	2	ENST00000349496.5:c.1305G>T	p.Lys435Asn	p.K435N	ENST00000349496	NM_001904.3	435	aaG/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112111351	112111352	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0015548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	187	462	0	ENST00000257430.4:c.449_450del	p.Lys150ArgfsTer17	p.K150Rfs*17	ENST00000257430	NM_000038.5	150	AAa/a																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495472	149495472	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	666	977	1	ENST00000261799.4:c.3175T>A	p.Ser1059Thr	p.S1059T	ENST00000261799	NM_002609.3	1059	Tcc/Acc																																																																														
AR	367	MSKCC	GRCh37	X	66766237	66766237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	203	247	0	ENST00000374690.3:c.1249G>A	p.Ala417Thr	p.A417T	ENST00000374690	NM_000044.3	417	Gcg/Acg																																																																														
APC	324	MSKCC	GRCh37	5	112175365	112175366	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	145	272	0	ENST00000257430.4:c.4077dup	p.Ser1360IlefsTer15	p.S1360Ifs*15	ENST00000257430	NM_000038.5	1358	-/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916926	178916937	+	inframe_deletion	In_Frame_Del	DEL	GTAGGCAACCGT	GTAGGCAACCGT	-			P-0016441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	120	664	0	ENST00000263967.3:c.314_325del	p.Val105_Arg108del	p.V105_R108del	ENST00000263967	NM_006218.2	105	GTAGGCAACCGT/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0016441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	111	420	0	ENST00000269305.4:c.782+1G>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
BRCA1	672	MSKCC	GRCh37	17	41246695	41246695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	121	479	0	ENST00000357654.3:c.853C>T	p.His285Tyr	p.H285Y	ENST00000357654	NM_007294.3	285	Cat/Tat																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440695	56440696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	127	678	0	ENST00000407977.2:c.522dup	p.Phe175ValfsTer13	p.F175Vfs*13	ENST00000407977		174	-/G																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581343	48581344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATT			P-0016441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	95	474	0	ENST00000342988.3:c.649_652dup	p.Pro218HisfsTer18	p.P218Hfs*18	ENST00000342988	NM_005359.5	216	aac/aaCATTc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918712	44918712	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0016441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	106	230	0	ENST00000377967.4:c.1194+1G>C		p.X398_splice	ENST00000377967	NM_021140.2	398																																																																															
KMT2A	4297	MSKCC	GRCh37	11	118347553	118347553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	56	349	0	ENST00000534358.1:c.3190C>T	p.Arg1064Ter	p.R1064*	ENST00000534358	NM_005933.3	1064	Cga/Tga																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944842	31944842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1344	164	708	0	ENST00000340398.3:c.259G>A	p.Ala87Thr	p.A87T	ENST00000340398	NM_001013699.2	87	Gca/Aca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231289	98231289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139705799		P-0017019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	66	424	2	ENST00000331920.6:c.1994G>A	p.Arg665His	p.R665H	ENST00000331920	NM_000264.3	665	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	333	577	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
TCF3	6929	MSKCC	GRCh37	19	1620991	1620991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	175	661	4	ENST00000344749.5:c.1069G>A	p.Val357Met	p.V357M	ENST00000344749	NM_001136139.2	357	Gtg/Atg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17948009	17948009	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	50	571	0	ENST00000458235.1:c.1715C>G	p.Ala572Gly	p.A572G	ENST00000458235	NM_000215.3	572	gCa/gGa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38953142	38953142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	85	352	0	ENST00000357387.3:c.2842G>A	p.Val948Met	p.V948M	ENST00000357387	NM_152756.3	948	Gtg/Atg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176519459	176519459	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	421	618	0	ENST00000292408.4:c.865A>G	p.Ile289Val	p.I289V	ENST00000292408	NM_213647.1	289	Atc/Gtc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	201	401	0				ENST00000310581	NM_198253.2																																																																																
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	468	439	1	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030223	180030223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200835339		P-0017489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	331	621	3	ENST00000261937.6:c.4061G>A	p.Arg1354His	p.R1354H	ENST00000261937	NM_182925.4	1354	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	156	283	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																														
SESN2	83667	MSKCC	GRCh37	1	28601376	28601376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	147	544	1	ENST00000253063.3:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000253063	NM_031459.4	354	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576862	7576863	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	339	596	0	ENST00000269305.4:c.983dupT	p.Thr329HisfsTer8	p.T329Hfs*8	ENST00000269305	NM_001126112.2	328	ttc/ttTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402576	139402576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	126	673	0	ENST00000277541.6:c.3341G>A	p.Arg1114His	p.R1114H	ENST00000277541	NM_017617.3	1114	cGc/cAc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43705471	43705471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	111	590	0	ENST00000382044.4:c.5151delC	p.Ser1718LeufsTer92	p.S1718Lfs*92	ENST00000382044	NM_001141980.1	1717	ccC/cc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56181892	56181892	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0017754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	81	183	0	ENST00000399503.3:c.4114+2T>G		p.X1372_splice	ENST00000399503	NM_005921.1	1372																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153259012	153259013	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0017808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	75	373	0	ENST00000281708.4:c.802_803delAT	p.Met268AspfsTer18	p.M268Dfs*18	ENST00000281708	NM_033632.3	268	ATg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0017808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	360	733	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	196	494	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9776541	9776541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	295	710	0	ENST00000377346.4:c.644C>T	p.Ala215Val	p.A215V	ENST00000377346	NM_005026.3	215	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175371	112175372	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	209	256	0	ENST00000257430.4:c.4083dup	p.Ser1362LeufsTer13	p.S1362Lfs*13	ENST00000257430	NM_000038.5	1360	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0018070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	32	625	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11169374	11169374	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	68	966	0	ENST00000361445.4:c.7501A>T	p.Ile2501Phe	p.I2501F	ENST00000361445	NM_004958.3	2501	Att/Ttt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953258	81953258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	45	389	0	ENST00000359376.3:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000359376	NM_002661.3	742	Cgc/Tgc																																																																														
ERG	2078	MSKCC	GRCh37	21	39795356	39795356	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	55	695	0	ENST00000288319.7:c.364G>T	p.Glu122Ter	p.E122*	ENST00000288319	NM_182918.3	122	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112173210	112173308	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTGTGACCTTAATTTTGTGATCTCTTGATTTTATTTCAGGCAAATCCTAAGAGAGAACAACTGTCTACAAACTTTATTACAACACTTAAAATCTCATA	ATTGTGACCTTAATTTTGTGATCTCTTGATTTTATTTCAGGCAAATCCTAAGAGAGAACAACTGTCTACAAACTTTATTACAACACTTAAAATCTCATA	-			P-0018070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	23	177	0	ENST00000257430.4:c.1959-40_2017delATTGTGACCTTAATTTTGTGATCTCTTGATTTTATTTCAGGCAAATCCTAAGAGAGAACAACTGTCTACAAACTTTATTACAACACTTAAAATCTCATA		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																															
CDK6	1021	MSKCC	GRCh37	7	92244481	92244481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	76	410	0	ENST00000265734.4:c.954G>T	p.Gln318His	p.Q318H	ENST00000265734	NM_001259.6	318	caG/caT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	156	748	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0019267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	106	876	1	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
PAK1	5058	MSKCC	GRCh37	11	77047314	77047314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	96	468	0	ENST00000356341.3:c.1230C>A	p.Phe410Leu	p.F410L	ENST00000356341	NM_002576.4	410	ttC/ttA																																																																														
SLX4	84464	MSKCC	GRCh37	16	3652204	3652204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	92	917	3	ENST00000294008.3:c.865G>A	p.Glu289Lys	p.E289K	ENST00000294008	NM_032444.2	289	Gag/Aag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117878	70117888	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGGCGGC	GCGCAGGCGGC	-			P-0019267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	92	479	1	ENST00000245479.2:c.353_363del	p.Ala118GlufsTer130	p.A118Efs*130	ENST00000245479	NM_000346.3	116	GCGCAGGCGGCg/g																																																																														
SDHA	6389	MSKCC	GRCh37	5	225669	225669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	66	865	1	ENST00000264932.6:c.448G>A	p.Val150Met	p.V150M	ENST00000264932	NM_004168.2	150	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	200	784	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	94	599	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	15	705	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	30	845	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115261272	115261273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGGCGA			P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	99	831	0	ENST00000438362.2:c.2442_2448dup	p.Met817SerfsTer13	p.M817Sfs*13	ENST00000438362	NM_001242891.1	816	-/TCGCCTA																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115446	115115446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	279	680	0	ENST00000257566.3:c.880del	p.Ile294Ter	p.I294*	ENST00000257566	NM_016569.3	294	Ata/ta																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877386	89877386	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139160837		P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	103	845	0	ENST00000389301.3:c.377C>T	p.Thr126Met	p.T126M	ENST00000389301	NM_000135.2	126	aCg/aTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221060	5221060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140049694		P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	111	809	0	ENST00000357368.4:c.3406G>A	p.Gly1136Ser	p.G1136S	ENST00000357368	NM_002850.3	1136	Ggc/Agc																																																																														
CIC	23152	MSKCC	GRCh37	19	42793100	42793100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	146	1018	3	ENST00000575354.2:c.992C>T	p.Pro331Leu	p.P331L	ENST00000575354	NM_015125.3	331	cCg/cTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543845	212543845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	78	621	0	ENST00000342788.4:c.1554C>A	p.Asp518Glu	p.D518E	ENST00000342788	NM_005235.2	518	gaC/gaA																																																																														
APC	324	MSKCC	GRCh37	5	112174374	112174374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	74	483	0	ENST00000257430.4:c.3083G>A	p.Ser1028Asn	p.S1028N	ENST00000257430	NM_000038.5	1028	aGt/aAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0019594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	176	540	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	450	812	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0019594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	248	528	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0019594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	175	361	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																														
IL7R	3575	MSKCC	GRCh37	5	35860962	35860962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	61	330	0	ENST00000303115.3:c.91G>A	p.Glu31Lys	p.E31K	ENST00000303115	NM_002185.3	31	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116423497	116423497	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	157	381	0	ENST00000397752.3:c.3772C>T	p.Gln1258Ter	p.Q1258*	ENST00000397752	NM_000245.2	1258	Caa/Taa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	273	697	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807914	3807914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	200	660	3	ENST00000262367.5:c.3505C>T	p.Arg1169Cys	p.R1169C	ENST00000262367	NM_004380.2	1169	Cgc/Tgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045902	180045902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	183	610	0	ENST00000261937.6:c.2869C>T	p.Arg957Cys	p.R957C	ENST00000261937	NM_182925.4	957	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577123	+	missense_variant	Missense_Mutation	ONP	CGCA	CGCA	AGCG			P-0019699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	444	967	2	ENST00000269305.4:c.815_818delinsCGCT	p.Val272_Arg273delinsAlaLeu	p.V272_R273delinsAL	ENST00000269305	NM_001126112.2	272	gTGCGt/gCGCTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0019780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	155	580	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0019780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	159	772	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0019780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	233	613	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562282	21562282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	792	1008	1	ENST00000382592.4:c.1637C>T	p.Ala546Val	p.A546V	ENST00000382592	NM_014572.2	546	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	377	748	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
SOX2	6657	MSKCC	GRCh37	3	181430363	181430363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	590	760	0	ENST00000325404.1:c.215G>A	p.Ser72Asn	p.S72N	ENST00000325404	NM_003106.3	72	aGc/aAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	191	753	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	182	956	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	341	687	2	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	116	622	5	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	167	931	0	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	106	763	1	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	119	1072	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	237	1123	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	206	827	13	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	173	730	12	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176054984	176054984	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	190	1144	1	ENST00000367669.3:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000367669	NM_022457.5	357	Cga/Tga																																																																														
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	160	889	0	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	177	1150	9	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870961	12870962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	155	682	0	ENST00000228872.4:c.192dup	p.Gln65SerfsTer60	p.Q65Sfs*60	ENST00000228872	NM_004064.3	63	gat/gaTt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193218979	193218979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	83	667	0	ENST00000367435.3:c.1537C>T	p.Arg513Trp	p.R513W	ENST00000367435	NM_024529.4	513	Cgg/Tgg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	234	1200	3	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	117	740	1	ENST00000262189.6:c.427delA	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815757	32815757	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	229	1069	0	ENST00000354258.4:c.1859del	p.Gly620AspfsTer44	p.G620Dfs*44	ENST00000354258	NM_000593.5	620	gGa/ga																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39317348	39317348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	190	1156	2	ENST00000373001.3:c.838C>T	p.Gln280Ter	p.Q280*	ENST00000373001	NM_022157.3	280	Caa/Taa																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466512	120466512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	157	1138	5	ENST00000256646.2:c.4607C>T	p.Ala1536Val	p.A1536V	ENST00000256646	NM_024408.3	1536	gCt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685271	89685271	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	133	676	2	ENST00000371953.3:c.170delT	p.Leu57TrpfsTer42	p.L57Wfs*42	ENST00000371953	NM_000314.4	56	Ttt/tt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910819	114910819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	253	1114	1	ENST00000543371.1:c.938C>T	p.Ala313Val	p.A313V	ENST00000543371	NM_001198531.1	313	gCc/gTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118390460	118390461	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	196	957	0	ENST00000534358.1:c.11280dupC	p.Asn3762GlufsTer9	p.N3762Efs*9	ENST00000534358	NM_005933.3	3758	-/C																																																																														
POLE	5426	MSKCC	GRCh37	12	133252326	133252326	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	172	862	0	ENST00000320574.5:c.1101del	p.Phe367LeufsTer15	p.F367Lfs*15	ENST00000320574	NM_006231.2	367	ttT/tt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434962	110434964	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	257	1150	8	ENST00000375856.3:c.3437_3439del	p.Arg1146del	p.R1146del	ENST00000375856	NM_003749.2	1146	cGCCac/cac																																																																														
MGA	23269	MSKCC	GRCh37	15	42042041	42042041	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	177	1049	0	ENST00000219905.7:c.6240delA	p.Val2081TrpfsTer21	p.V2081Wfs*21	ENST00000219905	NM_001164273.1	2079	gAa/ga																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14015969	14015969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	143	700	0	ENST00000311895.7:c.289C>T	p.Arg97Cys	p.R97C	ENST00000311895	NM_005236.2	97	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829902	72829902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	243	1053	3	ENST00000268489.5:c.6679C>T	p.Arg2227Trp	p.R2227W	ENST00000268489	NM_006885.3	2227	Cgg/Tgg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17122374	17122374	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	63	940	1	ENST00000285071.4:c.1021del	p.Arg341GlyfsTer12	p.R341Gfs*12	ENST00000285071	NM_144997.5	341	Cgg/gg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198285179	198285179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	165	1002	1	ENST00000335508.6:c.388C>T	p.Pro130Ser	p.P130S	ENST00000335508	NM_012433.2	130	Cca/Tca																																																																														
BARD1	580	MSKCC	GRCh37	2	215645975	215645975	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	151	900	0	ENST00000260947.4:c.623delA	p.Lys208ArgfsTer4	p.K208Rfs*4	ENST00000260947	NM_000465.2	208	aAg/ag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661664	227661665	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	162	784	0	ENST00000305123.5:c.1790_1791del	p.Gly597AlafsTer13	p.G597Afs*13	ENST00000305123	NM_005544.2	597	gGG/g																																																																														
NF2	4771	MSKCC	GRCh37	22	30077552	30077552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	208	1035	0	ENST00000338641.4:c.1699G>A	p.Asp567Asn	p.D567N	ENST00000338641	NM_000268.3	567	Gac/Aac																																																																														
MLH1	4292	MSKCC	GRCh37	3	37042537	37042537	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	283	926	0	ENST00000231790.2:c.299del	p.Arg100GlnfsTer8	p.R100Qfs*8	ENST00000231790	NM_000249.3	100	cGa/ca																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053590	37053590	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	31	837	2	ENST00000231790.2:c.677G>A	p.Arg226Gln	p.R226Q	ENST00000231790	NM_000249.3	226	cGa/cAa																																																																														
TAP1	6890	MSKCC	GRCh37	6	32815453	32815453	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	99	848	0	ENST00000354258.4:c.1921-1G>A		p.X641_splice	ENST00000354258	NM_000593.5	641																																																																															
TAP1	6890	MSKCC	GRCh37	6	32815802	32815802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	230	1016	0	ENST00000354258.4:c.1814G>A	p.Ser605Asn	p.S605N	ENST00000354258	NM_000593.5	605	aGc/aAc																																																																														
TAP1	6890	MSKCC	GRCh37	6	32821048	32821048	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	82	1262	4	ENST00000354258.4:c.546del	p.Ser184ProfsTer54	p.S184Pfs*54	ENST00000354258	NM_000593.5	182	ccC/cc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211166	55211166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	89	788	0	ENST00000275493.2:c.409A>G	p.Met137Val	p.M137V	ENST00000275493	NM_005228.3	137	Atg/Gtg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100463	157100477	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGGCGGCCGCGG	AGCAGGCGGCCGCGG	T			P-0020144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	14	59	0	ENST00000346085.5:c.1400_1414delinsT	p.Gln467LeufsTer63	p.Q467Lfs*63	ENST00000346085	NM_020732.3	467	cAGCAGGCGGCCGCGGgc/cTgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	189	900	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63700048	63700048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	42	287	0	ENST00000279873.7:c.383C>T	p.Pro128Leu	p.P128L	ENST00000279873	NM_032199.2	128	cCa/cTa																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111885339	111885452	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATAGCCAAGGTATGGGGTGGGGTGGGGTGGGGTGGGGCAGGCAGGACCGTGCCACCCCTCTCCACTGGAGTTCAGGGTCCTAGAGGGACAGCCCGAGCCCACCATCCTCTCCT	GATAGCCAAGGTATGGGGTGGGGTGGGGTGGGGTGGGGCAGGCAGGACCGTGCCACCCCTCTCCACTGGAGTTCAGGGTCCTAGAGGGACAGCCCGAGCCCACCATCCTCTCCT	-			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	42	369	0	ENST00000341259.2:c.1227_1237-8del		p.X409_splice	ENST00000341259	NM_005475.2	409																																																																															
TSC2	7249	MSKCC	GRCh37	16	2134980	2134980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1535	94	1243	2	ENST00000219476.3:c.4522C>T	p.Pro1508Ser	p.P1508S	ENST00000219476	NM_000548.3	1508	Ccc/Tcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900954	3900954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1404	159	1009	0	ENST00000262367.5:c.142G>A	p.Gly48Arg	p.G48R	ENST00000262367	NM_004380.2	48	Gga/Aga																																																																														
SMO	6608	MSKCC	GRCh37	7	128852056	128852056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1448	110	1214	0	ENST00000249373.3:c.2128C>A	p.Gln710Lys	p.Q710K	ENST00000249373	NM_005631.4	710	Cag/Aag																																																																														
SYK	6850	MSKCC	GRCh37	9	93637029	93637029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	40	464	0	ENST00000375746.1:c.1079C>T	p.Pro360Leu	p.P360L	ENST00000375746	NM_001174167.1	360	cCc/cTc																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20148678	20148678	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	63	948	0	ENST00000379607.5:c.385A>C	p.Ile129Leu	p.I129L	ENST00000379607	NM_001412.3	129	Att/Ctt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	230	644	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	322	838	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	115	306	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624184	89624232	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	GCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACA	GCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACA	-			P-0020642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	80	106	0	ENST00000371953.3:c.-37_12delTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATC		p.*13fs*	ENST00000371953	NM_000314.4	13																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88472460	88472460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	144	664	0	ENST00000360948.2:c.2095G>A	p.Gly699Ser	p.G699S	ENST00000360948	NM_001012338.2	699	Ggc/Agc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266074	41266266	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTG	ACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTG	-			P-0020642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	99	316	0	ENST00000349496.5:c.71_241+22del		p.X24_splice	ENST00000349496	NM_001904.3	24																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	283	876	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	220	374	1	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	456	1180	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
WT1	7490	MSKCC	GRCh37	11	32456756	32456756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	363	925	4	ENST00000332351.3:c.136G>A	p.Ala46Thr	p.A46T	ENST00000332351	NM_024426.4	46	Gcc/Acc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222886	5222886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	98	917	1	ENST00000357368.4:c.2917G>A	p.Gly973Ser	p.G973S	ENST00000357368	NM_002850.3	973	Ggt/Agt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640512	3640512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	372	980	0	ENST00000294008.3:c.3127G>A	p.Gly1043Arg	p.G1043R	ENST00000294008	NM_032444.2	1043	Ggg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579576	7579640	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCA	GGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCA	-			P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	218	870	0	ENST00000269305.4:c.97-50_111del		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584781	48584782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCTTCA			P-0021325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	212	727	0	ENST00000342988.3:c.860_866dup	p.His290SerfsTer20	p.H290Sfs*20	ENST00000342988	NM_005359.5	287	cat/cATCTTCAat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0021397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	336	836	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0021397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	74	398	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	53	462	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	23	500	1	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46726267	46726267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	110	645	0	ENST00000371975.4:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000371975	NM_003579.3	154	cGg/cAg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56414940	56414940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	116	680	1	ENST00000348428.3:c.2341C>T	p.Arg781Trp	p.R781W	ENST00000348428	NM_006785.3	781	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	172	844	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	76	571	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857449	9857449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	59	606	0	ENST00000330684.3:c.3952C>T	p.Arg1318Trp	p.R1318W	ENST00000330684	NM_001134407.1	1318	Cgg/Tgg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933367	39933367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	186	400	2	ENST00000378444.4:c.1232G>A	p.Arg411Gln	p.R411Q	ENST00000378444	NM_001123385.1	411	cGg/cAg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436576	110436576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	168	817	3	ENST00000375856.3:c.1825G>A	p.Ala609Thr	p.A609T	ENST00000375856	NM_003749.2	609	Gcg/Acg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711311	114711311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	106	512	0	ENST00000543371.1:c.326C>T	p.Pro109Leu	p.P109L	ENST00000543371	NM_001198531.1	109	cCc/cTc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591921	48591921	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	118	556	0	ENST00000342988.3:c.1084T>G	p.Phe362Val	p.F362V	ENST00000342988	NM_005359.5	362	Ttt/Gtt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210477	5210478	+	splice_donor_variant,intron_variant	Splice_Site	DNP	CA	CA	TC			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	51	642	1	ENST00000357368.4:c.5487+2_5487+3delinsGA		p.X1829_splice	ENST00000357368	NM_002850.3	1829																																																																															
PTPRS	5802	MSKCC	GRCh37	19	5214624	5214624	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	151	917	0	ENST00000357368.4:c.4442A>C	p.Glu1481Ala	p.E1481A	ENST00000357368	NM_002850.3	1481	gAg/gCg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41514500	41514501	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	74	746	1	ENST00000373198.4:c.160_161delinsCT	p.Trp54Leu	p.W54L	ENST00000373198	NM_133170.3	54	TGg/CTg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12650279	12650279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	133	762	0	ENST00000251849.4:c.567C>A	p.Asn189Lys	p.N189K	ENST00000251849	NM_002880.3	189	aaC/aaA																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670699	134670699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	105	660	0	ENST00000398015.3:c.610G>T	p.Ala204Ser	p.A204S	ENST00000398015	NM_004441.4	204	Gca/Tca																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38162950	38162951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	133	620	0	ENST00000317025.8:c.2255dup	p.Cys752TrpfsTer5	p.C752Wfs*5	ENST00000317025	NM_023034.1	752	tgt/tgGt																																																																														
RAD21	5885	MSKCC	GRCh37	8	117870674	117870674	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	334	620	1	ENST00000297338.2:c.398T>A	p.Phe133Tyr	p.F133Y	ENST00000297338	NM_006265.2	133	tTc/tAc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738385	145738386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	147	753	0	ENST00000428558.2:c.2599dup	p.Ala867GlyfsTer17	p.A867Gfs*17	ENST00000428558	NM_004260.3	867	gcc/gGcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021843-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			787	190	696	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221782	55221786	+	missense_variant	Missense_Mutation	ONP	CAGAT	CAGAT	AGAGA			P-0021843-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			838	164	616	3	ENST00000275493.2:c.826_830delinsAGAGA	p.Gln276_Met277delinsArgGlu	p.Q276_M277delinsRE	ENST00000275493	NM_005228.3	276	CAGATg/AGAGAg																																																																														
ATM	472	MSKCC	GRCh37	11	108143298	108143310	+	frameshift_variant	Frame_Shift_Del	DEL	AATGGCCCTAGTA	AATGGCCCTAGTA	-			P-0021843-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	103	462	0	ENST00000278616.4:c.3120_3132del	p.Met1040IlefsTer20	p.M1040Ifs*20	ENST00000278616	NM_000051.3	1039	agAATGGCCCTAGTA/ag																																																																														
MGA	23269	MSKCC	GRCh37	15	41988916	41988916	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021843-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	118	436	1	ENST00000219905.7:c.1708A>T	p.Lys570Ter	p.K570*	ENST00000219905	NM_001164273.1	570	Aag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	163	640	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577525	7577527	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	130	790	0	ENST00000269305.4:c.754_756del	p.Leu252del	p.L252del	ENST00000269305	NM_001126112.2	252	CTC/-																																																																														
BCOR	54880	MSKCC	GRCh37	X	39914723	39914723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	89	325	1	ENST00000378444.4:c.4639C>T	p.Arg1547Ter	p.R1547*	ENST00000378444	NM_001123385.1	1547	Cga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944172	71944172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	78	724	1	ENST00000298229.2:c.2005G>A	p.Asp669Asn	p.D669N	ENST00000298229	NM_001567.3	669	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578270	7578270	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	13	739	0	ENST00000269305.4:c.579T>G	p.His193Gln	p.H193Q	ENST00000269305	NM_001126112.2	193	caT/caG																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24167448	24167448	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	34	889	0	ENST00000263121.7:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000263121	NM_003073.3	278	Cag/Tag																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430210	181430226	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCAACTCCACC	GCGGCGGCAACTCCACC	-			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	33	417	0	ENST00000325404.1:c.70_86del	p.Asn24GlyfsTer66	p.N24Gfs*66	ENST00000325404	NM_003106.3	21	gGCGGCGGCAACTCCACC/g																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509763	106509763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	54	583	0	ENST00000359195.3:c.1757C>T	p.Pro586Leu	p.P586L	ENST00000359195	NM_002649.2	586	cCa/cTa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139407844	139407844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	66	626	1	ENST00000277541.6:c.2353G>A	p.Gly785Ser	p.G785S	ENST00000277541	NM_017617.3	785	Ggt/Agt																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	233	811	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	91	632	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	164	753	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	68	481	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40735467	40735467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	188	1030	1	ENST00000373198.4:c.3406C>T	p.Arg1136Cys	p.R1136C	ENST00000373198	NM_133170.3	1136	Cgt/Tgt																																																																														
POLE	5426	MSKCC	GRCh37	12	133257751	133257751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	176	935	1	ENST00000320574.5:c.177G>T	p.Lys59Asn	p.K59N	ENST00000320574	NM_006231.2	59	aaG/aaT																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437908	110437908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	11	36	0	ENST00000375856.3:c.493G>A	p.Ala165Thr	p.A165T	ENST00000375856	NM_003749.2	165	Gcc/Acc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632618	3632618	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	96	1203	1	ENST00000294008.3:c.5230C>T	p.Gln1744Ter	p.Q1744*	ENST00000294008	NM_032444.2	1744	Cag/Tag																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646641	23646641	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	35	702	0	ENST00000261584.4:c.1226A>C	p.Tyr409Ser	p.Y409S	ENST00000261584	NM_024675.3	409	tAt/tCt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538254	9538254	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	130	868	2	ENST00000353224.5:c.1743+1del		p.X581_splice	ENST00000353224	NM_177990.2	581																																																																															
APC	324	MSKCC	GRCh37	5	112175944	112175945	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0022555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	77	322	0	ENST00000257430.4:c.4655_4656del	p.Glu1552GlyfsTer6	p.E1552Gfs*6	ENST00000257430	NM_000038.5	1551	aaAGag/aaag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	177	763	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	74	438	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	61	585	0	ENST00000342988.3:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000342988	NM_005359.5	363	tGt/tTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879903	37879903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	372	1090	2	ENST00000269571.5:c.2198C>T	p.Thr733Ile	p.T733I	ENST00000269571		733	aCa/aTa																																																																														
PARK2	5071	MSKCC	GRCh37	6	161807855	161807855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	124	752	4	ENST00000366898.1:c.1138G>A	p.Val380Ile	p.V380I	ENST00000366898	NM_004562.2	380	Gta/Ata																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39644726	39644726	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	54	453	0	ENST00000262039.4:c.2455T>G	p.Leu819Val	p.L819V	ENST00000262039	NM_002647.2	819	Ttg/Gtg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39347488	39347488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1226	139	864	0	ENST00000402219.2:c.76G>T	p.Ala26Ser	p.A26S	ENST00000402219	NM_005633.3	26	Gcg/Tcg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278082	41278082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	104	420	0	ENST00000349496.5:c.1958C>A	p.Thr653Lys	p.T653K	ENST00000349496	NM_001904.3	653	aCa/aAa																																																																														
MITF	4286	MSKCC	GRCh37	3	69928358	69928358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	200	527	0	ENST00000352241.4:c.178C>T	p.Arg60Cys	p.R60C	ENST00000352241	NM_198159.2	60	Cgc/Tgc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467644	66467644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	74	576	4	ENST00000273854.3:c.625G>C	p.Gly209Arg	p.G209R	ENST00000273854	NM_004439.5	209	Gga/Cga																																																																														
APC	324	MSKCC	GRCh37	5	112151191	112151191	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	76	488	0	ENST00000257430.4:c.836del		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412634	63412634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	561	864	7	ENST00000330258.3:c.533G>A	p.Arg178His	p.R178H	ENST00000330258	NM_152424.3	178	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	503	794	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32950905	32950915	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCAGACCC	GCAGCAGACCC	-			P-0023296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	459	778	0	ENST00000380152.3:c.8731_8741del	p.Ala2911SerfsTer4	p.A2911Sfs*4	ENST00000380152		2911	GCAGCAGACCCa/a																																																																														
RB1	5925	MSKCC	GRCh37	13	48916752	48916753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	447	690	0	ENST00000267163.4:c.287dup	p.Glu97GlyfsTer13	p.E97Gfs*13	ENST00000267163	NM_000321.2	94	-/A																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349157	89349157	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	835	1238	0	ENST00000301030.4:c.3793T>G	p.Ser1265Ala	p.S1265A	ENST00000301030	NM_001256183.1	1265	Tcc/Gcc																																																																														
VHL	7428	MSKCC	GRCh37	3	10183637	10183637	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	902	794	0	ENST00000256474.2:c.106G>T	p.Glu36Ter	p.E36*	ENST00000256474	NM_000551.3	36	Gag/Tag																																																																														
MDC1	9656	MSKCC	GRCh37	6	30680772	30680772	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	752	636	0	ENST00000376406.3:c.947T>A	p.Val316Asp	p.V316D	ENST00000376406	NM_014641.2	316	gTc/gAc																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137528107	137528107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	265	377	0	ENST00000367739.4:c.193A>G	p.Asn65Asp	p.N65D	ENST00000367739	NM_000416.2	65	Aac/Gac																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035235	6035238	+	frameshift_variant	Frame_Shift_Del	DEL	TGCG	TGCG	-			P-0023296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	420	680	0	ENST00000265849.7:c.830_833del	p.Thr277MetfsTer29	p.T277Mfs*29	ENST00000265849	NM_000535.5	277	aCGCAt/at																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38282097	38282097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	593	1103	1	ENST00000425967.3:c.959G>T	p.Trp320Leu	p.W320L	ENST00000425967	NM_001174067.1	320	tGg/tTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391092	139391092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	571	939	2	ENST00000277541.6:c.7099G>A	p.Gly2367Ser	p.G2367S	ENST00000277541	NM_017617.3	2367	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	98	715	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213891	66213891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	81	561	0	ENST00000273854.3:c.2539C>A	p.Pro847Thr	p.P847T	ENST00000273854	NM_004439.5	847	Cca/Aca																																																																														
STK11	6794	MSKCC	GRCh37	19	1207176	1207176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	111	803	1	ENST00000326873.7:c.267del	p.Asn90ThrfsTer6	p.N90Tfs*6	ENST00000326873	NM_000455.4	88	atC/at																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156841491	156841491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	99	762	1	ENST00000524377.1:c.794G>A	p.Cys265Tyr	p.C265Y	ENST00000524377	NM_002529.3	265	tGc/tAc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118307583	118307583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	92	651	0	ENST00000534358.1:c.356C>T	p.Ser119Leu	p.S119L	ENST00000534358	NM_005933.3	119	tCg/tTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21555685	21555685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	88	649	0	ENST00000382592.4:c.2585G>T	p.Arg862Leu	p.R862L	ENST00000382592	NM_014572.2	862	cGg/cTg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40462560	40462560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	96	590	0	ENST00000345506.4:c.2258A>G	p.Asp753Gly	p.D753G	ENST00000345506	NM_003152.3	753	gAc/gGc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794791	42794791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	82	541	0	ENST00000575354.2:c.1871G>T	p.Gly624Val	p.G624V	ENST00000575354	NM_015125.3	624	gGa/gTa																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119634948	119634948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	61	393	0	ENST00000316626.5:c.551C>T	p.Pro184Leu	p.P184L	ENST00000316626		184	cCg/cTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526334	31526334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	117	915	0	ENST00000344624.3:c.706C>T	p.His236Tyr	p.H236Y	ENST00000344624		236	Cac/Tac																																																																														
FYN	2534	MSKCC	GRCh37	6	111983052	111983053	+	missense_variant	Missense_Mutation	DNP	AG	AG	GC			P-0023600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	68	699	1	ENST00000368678.4:c.1494_1495delinsGC	p.His498_Cys499delinsGlnArg	p.H498_C499delinsQR	ENST00000368678		498	caCTgc/caGCgc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426081	47426081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	72	367	0	ENST00000377045.4:c.601G>C	p.Ala201Pro	p.A201P	ENST00000377045	NM_001654.4	201	Gcc/Ccc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411813	63411813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	87	430	1	ENST00000330258.3:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000330258	NM_152424.3	452	Gaa/Aaa																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518660	204518660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	280	438	0	ENST00000367182.3:c.1323G>C	p.Glu441Asp	p.E441D	ENST00000367182	NM_001278516.1	441	gaG/gaC																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71943946	71943946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			882	432	714	0	ENST00000298229.2:c.1879G>A	p.Glu627Lys	p.E627K	ENST00000298229	NM_001567.3	627	Gag/Aag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944526	71944526	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	426	656	2	ENST00000298229.2:c.2082G>C	p.Trp694Cys	p.W694C	ENST00000298229	NM_001567.3	694	tgG/tgC																																																																														
ATM	472	MSKCC	GRCh37	11	108119687	108119687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	198	283	1	ENST00000278616.4:c.1093G>C	p.Glu365Gln	p.E365Q	ENST00000278616	NM_000051.3	365	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49419971	49419971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			548	227	500	3	ENST00000301067.7:c.15778C>T	p.Pro5260Ser	p.P5260S	ENST00000301067	NM_003482.3	5260	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420020	49420020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	326	614	2	ENST00000301067.7:c.15729C>G	p.Ile5243Met	p.I5243M	ENST00000301067	NM_003482.3	5243	atC/atG																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061839	38061839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1287	532	677	1	ENST00000250448.2:c.150G>A	p.Met50Ile	p.M50I	ENST00000250448	NM_004496.3	50	atG/atA																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	276	416	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354402	354402	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	466	657	0	ENST00000262320.3:c.1156C>T	p.Gln386Ter	p.Q386*	ENST00000262320	NM_003502.3	386	Cag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	393	641	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821842	72821842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	312	529	1	ENST00000268489.5:c.10333G>A	p.Glu3445Lys	p.E3445K	ENST00000268489	NM_006885.3	3445	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	385	612	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961849	15961860	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTGAGCTGGC	AGGTGAGCTGGC	TG			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	307	593	2	ENST00000268712.3:c.5935_5946delinsCA	p.Ala1979GlnfsTer67	p.A1979Qfs*67	ENST00000268712	NM_006311.3	1979	GCCAGCTCACCT/CA																																																																														
NF1	4763	MSKCC	GRCh37	17	29657486	29657486	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	23	444	0	ENST00000358273.4:c.5782G>T	p.Glu1928Ter	p.E1928*	ENST00000358273	NM_001042492.2	1928	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29667571	29667571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			722	53	674	2	ENST00000358273.4:c.6970C>T	p.Gln2324Ter	p.Q2324*	ENST00000358273	NM_001042492.2	2324	Cag/Tag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47679226	47679226	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	182	439	0	ENST00000347630.2:c.980+1G>T		p.X327_splice	ENST00000347630	NM_001007230.1	327																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45368223	45368223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	286	477	1	ENST00000262160.6:c.1379C>T	p.Ser460Leu	p.S460L	ENST00000262160	NM_005901.5	460	tCa/tTa																																																																														
REL	5966	MSKCC	GRCh37	2	61121620	61121620	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	362	573	0	ENST00000295025.8:c.242G>C	p.Gly81Ala	p.G81A	ENST00000295025	NM_002908.2	81	gGa/gCa																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252947	36252948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	330	506	0	ENST00000300305.3:c.414_415insC	p.Asn139GlnfsTer5	p.N139Qfs*5	ENST00000300305		138	-/C																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252987	36252993	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAACA	TGGAACA	-			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			624	288	526	1	ENST00000300305.3:c.369_375del	p.Asp123GlufsTer8	p.D123Efs*8	ENST00000300305		123	gaTGTTCCA/ga																																																																														
MST1	4485	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			50	16	19	0	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825328	134825328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	255	453	0	ENST00000398015.3:c.844G>A	p.Glu282Lys	p.E282K	ENST00000398015	NM_004441.4	282	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1294240	1294240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			662	51	410	0	ENST00000310581.5:c.761G>T	p.Gly254Val	p.G254V	ENST00000310581	NM_198253.2	254	gGg/gTg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6048638	6048638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1310	81	559	0	ENST00000265849.7:c.13G>A	p.Glu5Lys	p.E5K	ENST00000265849	NM_000535.5	5	Gag/Aag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873626	151873626	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	339	449	0	ENST00000262189.6:c.8912C>G	p.Ser2971Cys	p.S2971C	ENST00000262189	NM_170606.2	2971	tCt/tGt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949162	151949162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	286	597	0	ENST00000262189.6:c.1483G>C	p.Glu495Gln	p.E495Q	ENST00000262189	NM_170606.2	495	Gag/Cag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046476	69046476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			750	194	643	1	ENST00000288368.4:c.3949C>T	p.Leu1317Phe	p.L1317F	ENST00000288368	NM_024870.2	1317	Ctt/Ttt																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80537088	80537088	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			700	66	591	0	ENST00000286548.4:c.310G>T	p.Glu104Ter	p.E104*	ENST00000286548	NM_002072.3	104	Gag/Tag																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128201179	128201179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	77	585	1	ENST00000265960.3:c.1556C>G	p.Ser519Cys	p.S519C	ENST00000265960	NM_001006617.1	519	tCc/tGc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223591	53223591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023946-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	224	464	0	ENST00000375401.3:c.3768G>T	p.Glu1256Asp	p.E1256D	ENST00000375401	NM_004187.3	1256	gaG/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	186	838	4	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	55	390	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	126	801	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265579	198265579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	157	792	2	ENST00000335508.6:c.2578G>A	p.Glu860Lys	p.E860K	ENST00000335508	NM_012433.2	860	Gaa/Aaa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354055	15354055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	103	638	0	ENST00000263377.2:c.2825C>T	p.Thr942Met	p.T942M	ENST00000263377	NM_058243.2	942	aCg/aTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32900395	32900395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	51	579	0	ENST00000380152.3:c.492G>C	p.Leu164Phe	p.L164F	ENST00000380152		164	ttG/ttC																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120135	70120136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	48	258	0	ENST00000245479.2:c.1138dup	p.His380ProfsTer198	p.H380Pfs*198	ENST00000245479	NM_000346.3	379	-/C																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266074	41266112	+	inframe_deletion	In_Frame_Del	DEL	ACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATT	ACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATT	-			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	94	390	0	ENST00000349496.5:c.71_109del	p.His24_Ser37delinsPro	p.H24_S37delinsP	ENST00000349496	NM_001904.3	24	cACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTct/cct																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138277	2138277	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TCT			P-0024204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	175	978	0	ENST00000219476.3:c.5210delinsTCT	p.Pro1737LeufsTer90	p.P1737Lfs*90	ENST00000219476	NM_000548.3	1737	cCc/cTCTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	58	657	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717678	89717678	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	48	681	3	ENST00000371953.3:c.703G>T	p.Glu235Ter	p.E235*	ENST00000371953	NM_000314.4	235	Gaa/Taa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678584	88678584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	18	438	0	ENST00000360948.2:c.952G>A	p.Glu318Lys	p.E318K	ENST00000360948	NM_001012338.2	318	Gag/Aag																																																																														
DDR2	4921	MSKCC	GRCh37	1	162725540	162725540	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	49	578	0	ENST00000367921.3:c.652G>C	p.Asp218His	p.D218H	ENST00000367921	NM_006182.2	218	Gat/Cat																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984417	201984417	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	46	756	1	ENST00000359651.3:c.1082G>A	p.Trp361Ter	p.W361*	ENST00000359651		361	tGg/tAg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845537	63845537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	58	539	0	ENST00000279873.7:c.1276G>A	p.Glu426Lys	p.E426K	ENST00000279873	NM_032199.2	426	Gag/Aag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41228538	41228538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	79	880	0	ENST00000357654.3:c.4451C>G	p.Ser1484Cys	p.S1484C	ENST00000357654	NM_007294.3	1484	tCt/tGt																																																																														
CD79A	973	MSKCC	GRCh37	19	42385046	42385046	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0024324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	33	771	0	ENST00000221972.3:c.680G>C	p.Ter227SerextTer36	p.*227Sext*36	ENST00000221972	NM_021601.3	227	tGa/tCa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180038434	180038434	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	46	811	0	ENST00000261937.6:c.3583G>C	p.Glu1195Gln	p.E1195Q	ENST00000261937	NM_182925.4	1195	Gaa/Caa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979485	2979485	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	61	903	0	ENST00000396946.4:c.762G>C	p.Lys254Asn	p.K254N	ENST00000396946	NM_032415.4	254	aaG/aaC																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975423	13975423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	44	613	1	ENST00000405192.2:c.464C>T	p.Ser155Leu	p.S155L	ENST00000405192	NM_001163147.1	155	tCa/tTa																																																																														
STK11	6794	MSKCC	GRCh37	19	1207076	1207077	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	222	358	0	ENST00000326873.7:c.169dup	p.Glu57GlyfsTer106	p.E57Gfs*106	ENST00000326873	NM_000455.4	55	ctg/ctGg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	271	372	0	ENST00000171111.5:c.1249G>T	p.Gly417Trp	p.G417W	ENST00000171111	NM_203500.1	417	Ggg/Tgg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120794734	120794734	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	248	344	0	ENST00000257552.2:c.623A>G	p.Asp208Gly	p.D208G	ENST00000257552	NM_002442.3	208	gAc/gGc																																																																														
NF1	4763	MSKCC	GRCh37	17	29490395	29490395	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	427	338	0	ENST00000358273.4:c.479+1G>T		p.X160_splice	ENST00000358273	NM_001042492.2	160																																																																															
MGA	23269	MSKCC	GRCh37	15	42028472	42028472	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	177	380	0	ENST00000219905.7:c.4010A>T	p.Glu1337Val	p.E1337V	ENST00000219905	NM_001164273.1	1337	gAg/gTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42028461	42028471	+	frameshift_variant	Frame_Shift_Del	DEL	CAAACTGATTG	CAAACTGATTG	-			P-0025764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	164	368	0	ENST00000219905.7:c.3999_4009del	p.Lys1334AspfsTer24	p.K1334Dfs*24	ENST00000219905	NM_001164273.1	1333	acCAAACTGATTGag/acag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961884	15961884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025791-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	69	454	0	ENST00000268712.3:c.5911G>A	p.Asp1971Asn	p.D1971N	ENST00000268712	NM_006311.3	1971	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0025791-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			323	492	604	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																																																														
TP63	8626	MSKCC	GRCh37	3	189612157	189612157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025791-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			575	150	568	1	ENST00000264731.3:c.1909C>T	p.Arg637Cys	p.R637C	ENST00000264731	NM_003722.4	637	Cgt/Tgt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910605	32910605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025791-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			229	150	438	0	ENST00000380152.3:c.2113G>C	p.Glu705Gln	p.E705Q	ENST00000380152		705	Gaa/Caa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337604	73337604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025791-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			342	56	315	0	ENST00000377767.4:c.2112G>C	p.Lys704Asn	p.K704N	ENST00000377767	NM_014953.3	704	aaG/aaC																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437961	110437961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025791-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			137	58	66	0	ENST00000375856.3:c.440G>A	p.Arg147His	p.R147H	ENST00000375856	NM_003749.2	147	cGc/cAc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023301	31023301	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025791-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	175	569	1	ENST00000375687.4:c.2786A>T	p.Glu929Val	p.E929V	ENST00000375687	NM_015338.5	929	gAg/gTg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38176442	38176442	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025791-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			308	94	458	0	ENST00000317025.8:c.1826A>C	p.Gln609Pro	p.Q609P	ENST00000317025	NM_023034.1	609	cAg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	320	786	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543826	212543826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	70	524	2	ENST00000342788.4:c.1573C>T	p.Arg525Cys	p.R525C	ENST00000342788	NM_005235.2	525	Cgc/Tgc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81925195	81925195	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	73	429	0	ENST00000359376.3:c.986C>T	p.Thr329Met	p.T329M	ENST00000359376	NM_002661.3	329	aCg/aTg																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484058	50484058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	133	628	0	ENST00000394963.4:c.908G>A	p.Arg303Gln	p.R303Q	ENST00000394963	NM_003076.4	303	cGa/cAa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473616	67473616	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	90	621	1	ENST00000327367.4:c.696G>A	p.Trp232Ter	p.W232*	ENST00000327367	NM_005902.3	232	tgG/tgA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027309-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			281	108	410	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027309-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			317	150	268	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346115	152346115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027309-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			306	108	478	0	ENST00000359321.1:c.455C>T	p.Ser152Leu	p.S152L	ENST00000359321	NM_005431.1	152	tCa/tTa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193104530	193104530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027309-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			391	96	371	0	ENST00000367435.3:c.317C>T	p.Ala106Val	p.A106V	ENST00000367435	NM_024529.4	106	gCa/gTa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243858921	243858924	+	frameshift_variant	Frame_Shift_Del	DEL	AGGT	AGGT	-			P-0027309-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			407	83	350	0	ENST00000263826.5:c.141_144del	p.Leu47PhefsTer14	p.L47Ffs*14	ENST00000263826	NM_005465.4	47	ttACCT/tt																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205110	61205110	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0027309-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			497	120	443	0	ENST00000301761.2:c.50C>G	p.Ser17Ter	p.S17*	ENST00000301761	NM_017841.2	17	tCa/tGa																																																																														
MGA	23269	MSKCC	GRCh37	15	42028810	42028810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027309-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			520	154	558	0	ENST00000219905.7:c.4348C>G	p.Leu1450Val	p.L1450V	ENST00000219905	NM_001164273.1	1450	Ctg/Gtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	343	726	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	89	821	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241654	55241654	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	347	857	0	ENST00000275493.2:c.2102A>T	p.Gln701Leu	p.Q701L	ENST00000275493	NM_005228.3	701	cAa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	472	684	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748309	41748309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	129	631	0	ENST00000226382.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000226382	NM_003924.3	154	Cgc/Tgc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	113	439	1	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188183	11188183	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	116	429	0	ENST00000361445.4:c.5911G>A	p.Ala1971Thr	p.A1971T	ENST00000361445	NM_004958.3	1971	Gcc/Acc																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2090156	2090156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148474733		P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	357	847	3	ENST00000219066.1:c.793G>A	p.Ala265Thr	p.A265T	ENST00000219066	NM_002528.5	265	Gcc/Acc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288999	33288999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	131	516	0	ENST00000374542.5:c.553C>T	p.Arg185Trp	p.R185W	ENST00000374542	NM_001141970.1	185	Cgg/Tgg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436331	110436331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	106	280	0	ENST00000375856.3:c.2070G>T	p.Leu690Phe	p.L690F	ENST00000375856	NM_003749.2	690	ttG/ttT																																																																														
APC	324	MSKCC	GRCh37	5	112173625	112173625	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	117	409	0	ENST00000257430.4:c.2336del	p.Leu779Ter	p.L779*	ENST00000257430	NM_000038.5	778	aaT/aa																																																																														
APC	324	MSKCC	GRCh37	5	112175329	112175534	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAA	AGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAA	-			P-0029928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	44	298	0	ENST00000257430.4:c.4038_4243del	p.Ala1347TrpfsTer7	p.A1347Wfs*7	ENST00000257430	NM_000038.5	1346	tcAGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTCCGTTCAGAGTGAACCATGCAGTGGAATGGTAAgt/tcgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	179	569	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	48	564	4	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217330	11217330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	133	560	0	ENST00000361445.4:c.4348T>G	p.Tyr1450Asp	p.Y1450D	ENST00000361445	NM_004958.3	1450	Tat/Gat																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	185	484	1	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10602404	10602404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	224	684	0	ENST00000171111.5:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000171111	NM_203500.1	392	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112174265	112174275	+	frameshift_variant	Frame_Shift_Del	DEL	AGTAAGTTTTG	AGTAAGTTTTG	-			P-0030293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	149	485	0	ENST00000257430.4:c.2974_2984del	p.Ser992GlnfsTer12	p.S992Qfs*12	ENST00000257430	NM_000038.5	992	AGTAAGTTTTGc/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	336	619	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	71	451	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	83	559	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120139	70120140	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	82	228	0	ENST00000245479.2:c.1143_1144dupGC	p.Leu382ArgfsTer2	p.L382Rfs*2	ENST00000245479	NM_000346.3	381	acg/aCGcg																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588868	69588868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	132	588	0	ENST00000168712.1:c.368G>A	p.Arg123Gln	p.R123Q	ENST00000168712	NM_002007.2	123	cGg/cAg																																																																														
SRC	6714	MSKCC	GRCh37	20	36031634	36031634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	116	689	1	ENST00000358208.4:c.1463C>T	p.Pro488Leu	p.P488L	ENST00000358208		488	cCg/cTg																																																																														
AR	367	MSKCC	GRCh37	X	66863201	66863201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	91	503	0	ENST00000374690.3:c.1720G>A	p.Ala574Thr	p.A574T	ENST00000374690	NM_000044.3	574	Gct/Act																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	28	334	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	36	514	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509060	106509060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	25	433	0	ENST00000359195.3:c.1054G>A	p.Val352Met	p.V352M	ENST00000359195	NM_002649.2	352	Gtg/Atg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661671	227661671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	23	402	0	ENST00000305123.5:c.1784G>A	p.Arg595Gln	p.R595Q	ENST00000305123	NM_005544.2	595	cGg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440764	56440764	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	26	346	0	ENST00000407977.2:c.454C>T	p.Gln152Ter	p.Q152*	ENST00000407977		152	Cag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591855	48591855	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	28	326	0	ENST00000342988.3:c.1018A>T	p.Lys340Ter	p.K340*	ENST00000342988	NM_005359.5	340	Aag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974691	21974691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	23	309	0	ENST00000304494.5:c.136C>T	p.Arg46Trp	p.R46W	ENST00000304494	NM_000077.4	46	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974691	21974691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	23	309	0	ENST00000304494.5:c.136C>T	p.Arg46Trp	p.R46W	ENST00000304494	NM_000077.4	46	Cgg/Tgg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426151	47426151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	31	581	0	ENST00000377045.4:c.671C>T	p.Thr224Met	p.T224M	ENST00000377045	NM_001654.4	224	aCg/aTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435155	56435155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	115	687	0	ENST00000407977.2:c.1982C>T	p.Ser661Phe	p.S661F	ENST00000407977		661	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29508741	29508741	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	283	548	0	ENST00000358273.4:c.668G>A	p.Trp223Ter	p.W223*	ENST00000358273	NM_001042492.2	223	tGg/tAg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858570	57858570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	492	637	0	ENST00000228682.2:c.308C>A	p.Pro103His	p.P103H	ENST00000228682	NM_005269.2	103	cCc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133233736	133233736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	284	391	0	ENST00000320574.5:c.3568G>A	p.Glu1190Lys	p.E1190K	ENST00000320574	NM_006231.2	1190	Gag/Aag																																																																														
POLE	5426	MSKCC	GRCh37	12	133233839	133233839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	346	478	1	ENST00000320574.5:c.3465G>T	p.Lys1155Asn	p.K1155N	ENST00000320574	NM_006231.2	1155	aaG/aaT																																																																														
POLE	5426	MSKCC	GRCh37	12	133234009	133234009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	338	514	0	ENST00000320574.5:c.3385G>A	p.Asp1129Asn	p.D1129N	ENST00000320574	NM_006231.2	1129	Gat/Aat																																																																														
RB1	5925	MSKCC	GRCh37	13	49037880	49037880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	125	375	0	ENST00000267163.4:c.2120C>G	p.Ser707Cys	p.S707C	ENST00000267163	NM_000321.2	707	tCc/tGc																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732891	74732891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	60	162	0	ENST00000359995.5:c.352C>G	p.Arg118Gly	p.R118G	ENST00000359995	NM_001195427.1	118	Cgg/Ggg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56411677	56411677	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	288	458	0	ENST00000348428.3:c.1861A>C	p.Lys621Gln	p.K621Q	ENST00000348428	NM_006785.3	621	Aaa/Caa																																																																														
APC	324	MSKCC	GRCh37	5	112173835	112173835	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	179	354	1	ENST00000257430.4:c.2544A>T	p.Lys848Asn	p.K848N	ENST00000257430	NM_000038.5	848	aaA/aaT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120834	94120835	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTG			P-0031357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	235	539	0	ENST00000369303.4:c.214_216dup	p.Gln72dup	p.Q72dup	ENST00000369303	NM_004440.3	72	-/CAG																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	78	357	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0032013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	19	291	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	82	457	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	288	593	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2193766	2193766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	69	526	1	ENST00000398665.3:c.572C>T	p.Pro191Leu	p.P191L	ENST00000398665	NM_032482.2	191	cCg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919312	178919313	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0032013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	18	218	0	ENST00000263967.3:c.799_800del	p.Leu267GlufsTer4	p.L267Efs*4	ENST00000263967	NM_006218.2	266	cCT/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	158	437	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	422	664	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	98	384	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	184	615	0	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	70	330	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																														
APC	324	MSKCC	GRCh37	5	112173607	112173607	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	86	324	13	ENST00000257430.4:c.2319del	p.Phe773LeufsTer4	p.F773Lfs*4	ENST00000257430	NM_000038.5	772	acT/ac																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	272	590	1	ENST00000327367.4:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000327367	NM_005902.3	93	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106869	27106871	+	frameshift_variant	Frame_Shift_Del	DEL	CCC	CCC	AG			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	164	486	2	ENST00000324856.7:c.6480_6482delinsAG	p.Asn2160LysfsTer40	p.N2160Kfs*40	ENST00000324856	NM_006015.4	2160	aaCCCg/aaAGg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983018	201983019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	204	742	0	ENST00000359651.3:c.869_870dupAG	p.Gly291ArgfsTer4	p.G291Rfs*4	ENST00000359651		289	-/GA																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870825	12870825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	13	133	0	ENST00000228872.4:c.52G>T	p.Ala18Ser	p.A18S	ENST00000228872	NM_004064.3	18	Gcc/Tcc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119806	70119806	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	346	560	0	ENST00000245479.2:c.809del	p.Phe270SerfsTer9	p.F270Sfs*9	ENST00000245479	NM_000346.3	270	Ttc/tc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368200	45368200	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	91	363	0	ENST00000262160.6:c.1402T>C	p.Ter468GlnextTer8	p.*468Qext*8	ENST00000262160	NM_005901.5	468	Taa/Caa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249382	153249382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	143	510	0	ENST00000281708.4:c.1396T>C	p.Cys466Arg	p.C466R	ENST00000281708	NM_033632.3	466	Tgt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	58	663	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MGA	23269	MSKCC	GRCh37	15	42000307	42000307	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	38	515	0	ENST00000219905.7:c.2326G>T	p.Gly776Ter	p.G776*	ENST00000219905	NM_001164273.1	776	Gga/Tga																																																																														
STK11	6794	MSKCC	GRCh37	19	1220673	1220673	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	61	876	0	ENST00000326873.7:c.692del	p.Phe231SerfsTer56	p.F231Sfs*56	ENST00000326873	NM_000455.4	231	Ttc/tc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11114073	11114073	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	62	584	0	ENST00000344626.4:c.2001+1del		p.E667fs	ENST00000344626	NM_003072.3	667	gaG/ga																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623152	52623152	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	67	726	1	ENST00000394830.3:c.2899G>T	p.Glu967Ter	p.E967*	ENST00000394830	NM_018313.4	967	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1280394	1280394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	67	784	0	ENST00000310581.5:c.1829G>T	p.Arg610Leu	p.R610L	ENST00000310581	NM_198253.2	610	cGg/cTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55211050	55211050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	51	680	0	ENST00000275493.2:c.293G>T	p.Arg98Leu	p.R98L	ENST00000275493	NM_005228.3	98	cGa/cTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041045	47041046	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0032126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	57	799	2	ENST00000329236.7:c.1341_1341+1delinsTT		p.X447_splice	ENST00000329236	NM_001204466.1	447																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	25	352	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	90	538	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497347	149497347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140261309		P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	69	580	1	ENST00000261799.4:c.2971C>T	p.Arg991Cys	p.R991C	ENST00000261799	NM_002609.3	991	Cgc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	80	552	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175608	112175608	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	34	353	0	ENST00000257430.4:c.4317del	p.Pro1440HisfsTer33	p.P1440Hfs*33	ENST00000257430	NM_000038.5	1439	ccT/cc																																																																														
APC	324	MSKCC	GRCh37	5	112173560	112173560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	40	349	0	ENST00000257430.4:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000257430	NM_000038.5	757	Caa/Taa																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88676898	88676900	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	73	634	0	ENST00000372037.3:c.683_685del	p.Arg228_Thr229delinsPro	p.R228_T229delinsP	ENST00000372037	NM_004329.2	228	cGAAct/cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578514	7578550	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGG	TTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGG	-			P-0032391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	42	928	0	ENST00000269305.4:c.380_416del	p.Ser127Ter	p.S127*	ENST00000269305	NM_001126112.2	127	tCCCCTGCCCTCAACAAGATGTTTTGCCAACTGGCCAAg/tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	346	740	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2959063	2959063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41497250		P-0032447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	59	658	0	ENST00000396946.4:c.2453G>A	p.Arg818Gln	p.R818Q	ENST00000396946	NM_032415.4	818	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	338	479	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	256	381	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268084	153268084	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	134	266	0	ENST00000281708.4:c.724C>T	p.Gln242Ter	p.Q242*	ENST00000281708	NM_033632.3	242	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	99	303	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																																																														
APC	324	MSKCC	GRCh37	5	112174405	112174406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	81	280	0	ENST00000257430.4:c.3116dup	p.Arg1040LysfsTer8	p.R1040Kfs*8	ENST00000257430	NM_000038.5	1038	-/G																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740243	162740243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	275	375	0	ENST00000367921.3:c.1445A>G	p.Gln482Arg	p.Q482R	ENST00000367921	NM_006182.2	482	cAg/cGg																																																																														
ATM	472	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	168	494	0	ENST00000278616.4:c.9022C>G	p.Arg3008Gly	p.R3008G	ENST00000278616	NM_000051.3	3008	Cgt/Ggt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562213	21562213	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	242	612	2	ENST00000382592.4:c.1706A>T	p.Asp569Val	p.D569V	ENST00000382592	NM_014572.2	569	gAt/gTt																																																																														
RB1	5925	MSKCC	GRCh37	13	48955557	48955567	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAATCCCTT	TGGAATCCCTT	-			P-0032530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	58	361	0	ENST00000267163.4:c.1673_1683del	p.Met558SerfsTer10	p.M558Sfs*10	ENST00000267163	NM_000321.2	558	aTGGAATCCCTT/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	437	560	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	273	523	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	113	276	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0032538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	192	353	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120502	70120503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	369	639	0	ENST00000245479.2:c.1505dup	p.Tyr503LeufsTer75	p.Y503Lfs*75	ENST00000245479	NM_000346.3	502	gtc/gTtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	121	558	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	49	535	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	136	615	1	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7576865	7576865	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	121	714	0	ENST00000269305.4:c.981T>G	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taT/taG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	100	485	2	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175907	112175907	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	38	266	0	ENST00000257430.4:c.4616C>G	p.Ser1539Ter	p.S1539*	ENST00000257430	NM_000038.5	1539	tCa/tGa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711033	114711033	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	33	149	0	ENST00000543371.1:c.256+1G>C		p.X86_splice	ENST00000543371	NM_001198531.1	86																																																																															
PARP1	142	MSKCC	GRCh37	1	226576454	226576454	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	100	463	0	ENST00000366794.5:c.620A>C	p.Lys207Thr	p.K207T	ENST00000366794	NM_001618.3	207	aAg/aCg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88679823	88679823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	83	450	1	ENST00000360948.2:c.640G>A	p.Val214Met	p.V214M	ENST00000360948	NM_001012338.2	214	Gtg/Atg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3860747	3860747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	70	434	0	ENST00000262367.5:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000262367	NM_004380.2	278	Cag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663437	67663437	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	23	212	0	ENST00000264010.4:c.1837+1G>T		p.X613_splice	ENST00000264010	NM_006565.3	613																																																																															
KDR	3791	MSKCC	GRCh37	4	55981449	55981449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	59	407	0	ENST00000263923.4:c.488C>A	p.Ala163Glu	p.A163E	ENST00000263923	NM_002253.2	163	gCa/gAa																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345769	152345769	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	58	346	0	ENST00000359321.1:c.801A>C	p.Lys267Asn	p.K267N	ENST00000359321	NM_005431.1	267	aaA/aaC																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599988	10599988	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	223	653	0	ENST00000171111.5:c.1588C>T	p.Gln530Ter	p.Q530*	ENST00000171111	NM_203500.1	530	Cag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121151	11121152	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	185	642	0	ENST00000344626.4:c.2223_2224del	p.Arg741SerfsTer82	p.R741Sfs*82	ENST00000344626	NM_003072.3	740	GAg/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023736	27023736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	90	309	0	ENST00000324856.7:c.842C>T	p.Ala281Val	p.A281V	ENST00000324856	NM_006015.4	281	gCg/gTg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058550	72058550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	151	467	0	ENST00000357731.5:c.890G>T	p.Cys297Phe	p.C297F	ENST00000357731	NM_173808.2	297	tGt/tTt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984386	201984390	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTA	GTCTA	-			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	150	519	0	ENST00000359651.3:c.1051_1055del	p.Val351GlnfsTer118	p.V351Qfs*118	ENST00000359651		351	GTCTAc/c																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446810	49446810	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	147	459	0	ENST00000301067.7:c.1000A>T	p.Asn334Tyr	p.N334Y	ENST00000301067	NM_003482.3	334	Aat/Tat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913248	32913248	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	153	472	0	ENST00000380152.3:c.4756A>G	p.Thr1586Ala	p.T1586A	ENST00000380152		1586	Aca/Gca																																																																														
STK11	6794	MSKCC	GRCh37	19	1220450	1220461	+	inframe_deletion	In_Frame_Del	DEL	CCTGCTGCTCAC	CCTGCTGCTCAC	-			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	150	746	0	ENST00000326873.7:c.544_555del	p.Leu182_Thr185del	p.L182_T185del	ENST00000326873	NM_000455.4	181	aaCCTGCTGCTCACc/aac																																																																														
STK11	6794	MSKCC	GRCh37	19	1220451	1220466	+	protein_altering_variant	In_Frame_Del	DEL	CTGCTGCTCACCACCG	CTGCTGCTCACCACCG	ACCC			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	150	743	5	ENST00000326873.7:c.544_559delinsACCC	p.Leu182_Gly187delinsThrArg	p.L182_G187delinsTR	ENST00000326873	NM_000455.4	182	CTGCTGCTCACCACCGgt/ACCCgt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207577	2207582	+	inframe_deletion	In_Frame_Del	DEL	CGGCAC	CGGCAC	-			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	117	383	0	ENST00000398665.3:c.862_867del	p.Gly288_Thr289del	p.G288_T289del	ENST00000398665	NM_032482.2	287	atCGGCACc/atc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980883	40980883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	127	425	1	ENST00000373198.4:c.1603C>A	p.Leu535Ile	p.L535I	ENST00000373198	NM_133170.3	535	Ctc/Atc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908876	101908876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	194	599	0	ENST00000374994.4:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000374994	NM_004612.2	414	Cga/Tga																																																																														
ABL1	25	MSKCC	GRCh37	9	133750311	133750311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	173	522	0	ENST00000318560.5:c.1142A>T	p.Asp381Val	p.D381V	ENST00000318560	NM_005157.4	381	gAt/gTt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983088	201983098	+	frameshift_variant	Frame_Shift_Del	DEL	CAACTATGGGG	CAACTATGGGG	A			P-0033844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	165	525	0	ENST00000359651.3:c.937_947delinsA	p.Gln313ThrfsTer9	p.Q313Tfs*9	ENST00000359651		313	CAACTATGGGGc/Ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	391	497	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	169	260	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																														
ATM	472	MSKCC	GRCh37	11	108124767	108124767	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0033858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	76	281	0	ENST00000278616.4:c.2124+1G>A		p.X708_splice	ENST00000278616	NM_000051.3	708																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59820385	59820385	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	36	449	0	ENST00000259008.2:c.2368A>G	p.Lys790Glu	p.K790E	ENST00000259008	NM_032043.2	790	Aaa/Gaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500337	8500815	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCATCAATGTCTCTGAAATATGTAAGACAAAAAGGCAACAAAAAGGTAAGAAGGTAGTTTTGAAAAGTTAACTTCAAAATGTAAAAGAAGTGACTACAAAAAGCCAAGAAAAACACAGAAGACTTTAGATGGAGGCACAGAGACGGGCTGGACTGCAAGACCATAGGAGCCAACAGTTCTTTTAAAGAGAAGCAAATTACTGCATTGAGATTGAAAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAGGCTGTAGCAAAGACAAGTCTTTGGCAAAAATACTAAAGTAACAGCAATGCTGGGTAAAAAGATGAGCAGAGAAAAAAGATTACTGTGAGCCTATTGAAAGACAGCAGATCAAGACTGTGTCAGAAGGGTGCAAACTGACGTAGCGGAGGCAACATACCATCTTCATTGGTTCGAATCAACACGGACAAGCTCTCAGGGCCAGGGCCGACATCTGTATGG	GCATCAATGTCTCTGAAATATGTAAGACAAAAAGGCAACAAAAAGGTAAGAAGGTAGTTTTGAAAAGTTAACTTCAAAATGTAAAAGAAGTGACTACAAAAAGCCAAGAAAAACACAGAAGACTTTAGATGGAGGCACAGAGACGGGCTGGACTGCAAGACCATAGGAGCCAACAGTTCTTTTAAAGAGAAGCAAATTACTGCATTGAGATTGAAAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAGGCTGTAGCAAAGACAAGTCTTTGGCAAAAATACTAAAGTAACAGCAATGCTGGGTAAAAAGATGAGCAGAGAAAAAAGATTACTGTGAGCCTATTGAAAGACAGCAGATCAAGACTGTGTCAGAAGGGTGCAAACTGACGTAGCGGAGGCAACATACCATCTTCATTGGTTCGAATCAACACGGACAAGCTCTCAGGGCCAGGGCCGACATCTGTATGG	-			P-0033858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	76	1	0	ENST00000356435.5:c.2067_2128+417del		p.X689_splice	ENST00000356435		689																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	372	738	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0034093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	58	290	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
NUP93	9688	MSKCC	GRCh37	16	56875738	56875738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147381896		P-0034093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	187	407	0	ENST00000308159.5:c.2342G>A	p.Arg781His	p.R781H	ENST00000308159	NM_014669.4	781	cGc/cAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480306	89480306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	71	276	0	ENST00000336596.2:c.2143G>T	p.Asp715Tyr	p.D715Y	ENST00000336596	NM_005233.5	715	Gat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112111364	112111364	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	87	195	1	ENST00000257430.4:c.465del	p.Asp156ThrfsTer14	p.D156Tfs*14	ENST00000257430	NM_000038.5	154	gAa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	287	503	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11169741	11169741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	65	438	1	ENST00000361445.4:c.7412C>T	p.Thr2471Met	p.T2471M	ENST00000361445	NM_004958.3	2471	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112176027	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	TTAT	TTAT	-			P-0034143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	56	247	0	ENST00000257430.4:c.4738_4741del	p.Ile1580LeufsTer69	p.I1580Lfs*69	ENST00000257430	NM_000038.5	1579	aTTATt/at																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710592	114710592	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	115	310	0	ENST00000543371.1:c.78del	p.Glu26AspfsTer16	p.E26Dfs*16	ENST00000543371	NM_001198531.1	26	gAa/ga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295726	15295726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	48	532	1	ENST00000263388.2:c.2401G>A	p.Gly801Ser	p.G801S	ENST00000263388	NM_000435.2	801	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112174079	112174080	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0034143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	48	317	0	ENST00000257430.4:c.2791_2792del	p.His931PhefsTer8	p.H931Ffs*8	ENST00000257430	NM_000038.5	930	ACa/a																																																																														
STK11	6794	MSKCC	GRCh37	19	1220502	1220502	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	500	688	0	ENST00000326873.7:c.595G>T	p.Glu199Ter	p.E199*	ENST00000326873	NM_000455.4	199	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	597	835	1	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578548	7578548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	598	823	1	ENST00000269305.4:c.382C>T	p.Pro128Ser	p.P128S	ENST00000269305	NM_001126112.2	128	Cct/Tct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088799	27088799	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	293	398	0	ENST00000324856.7:c.2408A>G	p.Tyr803Cys	p.Y803C	ENST00000324856	NM_006015.4	803	tAt/tGt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843498	3843498	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	444	586	0	ENST00000262367.5:c.1105A>T	p.Arg369Ter	p.R369*	ENST00000262367	NM_004380.2	369	Aga/Tga																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62305393	62305393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	438	668	0	ENST00000508582.2:c.938C>T	p.Ala313Val	p.A313V	ENST00000508582		313	gCa/gTa																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182670	38182670	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	583	432	0	ENST00000396334.3:c.823A>G	p.Lys275Glu	p.K275E	ENST00000396334	NM_002468.4	275	Aaa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	116	478	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	99	414	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10248648	10248648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	128	549	0	ENST00000340748.4:c.4105G>A	p.Asp1369Asn	p.D1369N	ENST00000340748		1369	Gac/Aac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114905777	114905777	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	119	505	0	ENST00000543371.1:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000543371	NM_001198531.1	266	Caa/Taa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131244	17131244	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	190	907	0	ENST00000285071.4:c.208G>T	p.Glu70Ter	p.E70*	ENST00000285071	NM_144997.5	70	Gag/Tag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86676359	86676359	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	71	317	0	ENST00000274376.6:c.2637A>C	p.Lys879Asn	p.K879N	ENST00000274376	NM_002890.2	879	aaA/aaC																																																																														
APC	324	MSKCC	GRCh37	5	112175249	112175249	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	134	294	0	ENST00000257430.4:c.3958del	p.Val1320Ter	p.V1320*	ENST00000257430	NM_000038.5	1320	Gtg/tg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137309090	137309090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	185	1037	0	ENST00000481739.1:c.697G>C	p.Glu233Gln	p.E233Q	ENST00000481739	NM_002957.4	233	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	209	714	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	141	720	1	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259578	89259578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	95	449	0	ENST00000336596.2:c.722G>A	p.Arg241Lys	p.R241K	ENST00000336596	NM_005233.5	241	aGg/aAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	432	724	2	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087587	27087587	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	134	567	0	ENST00000324856.7:c.2161G>T	p.Gly721Cys	p.G721C	ENST00000324856	NM_006015.4	721	Ggc/Tgc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251805	212251805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	87	402	0	ENST00000342788.4:c.3254C>G	p.Thr1085Ser	p.T1085S	ENST00000342788	NM_005235.2	1085	aCt/aGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55231434	55231434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	162	628	0	ENST00000275493.2:c.1640G>A	p.Arg547Lys	p.R547K	ENST00000275493	NM_005228.3	547	aGg/aAg																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139566379	139566379	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0035127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	154	652	0	ENST00000308874.7:c.638A>C	p.Lys213Thr	p.K213T	ENST00000308874		213	aAg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	231	734	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	75	384	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520087	106520087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	52	331	1	ENST00000359195.3:c.2515C>T	p.Arg839Cys	p.R839C	ENST00000359195	NM_002649.2	839	Cgc/Tgc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324509	31324509	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs41553715		P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	20	433	6	ENST00000412585.2:c.299A>T	p.Glu100Val	p.E100V	ENST00000412585	NM_005514.6	100	gAg/gTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971150	21971173	+	inframe_deletion	In_Frame_Del	DEL	GCTCCGCGCCGTGGAGCAGCAGCA	GCTCCGCGCCGTGGAGCAGCAGCA	-			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	88	429	0	ENST00000304494.5:c.185_208del	p.Leu62_Glu69del	p.L62_E69del	ENST00000304494	NM_000077.4	62	cTGCTGCTGCTCCACGGCGCGGAGCcc/ccc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971150	21971173	+	inframe_deletion	In_Frame_Del	DEL	GCTCCGCGCCGTGGAGCAGCAGCA	GCTCCGCGCCGTGGAGCAGCAGCA	-			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	88	429	0	ENST00000304494.5:c.185_208del	p.Leu62_Glu69del	p.L62_E69del	ENST00000304494	NM_000077.4	62	cTGCTGCTGCTCCACGGCGCGGAGCcc/ccc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971150	21971173	+	inframe_deletion	In_Frame_Del	DEL	GCTCCGCGCCGTGGAGCAGCAGCA	GCTCCGCGCCGTGGAGCAGCAGCA	-			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	88	429	0	ENST00000304494.5:c.185_208del	p.Leu62_Glu69del	p.L62_E69del	ENST00000304494	NM_000077.4	62	cTGCTGCTGCTCCACGGCGCGGAGCcc/ccc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619810	1619810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	154	717	1	ENST00000344749.5:c.1136C>T	p.Ser379Leu	p.S379L	ENST00000344749	NM_001136139.2	379	tCg/tTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120740	115120740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	168	672	0	ENST00000257566.3:c.266C>A	p.Pro89His	p.P89H	ENST00000257566	NM_016569.3	89	cCt/cAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266058	41266274	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTG	AAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTG	-			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	60	348	0	ENST00000349496.5:c.59_241+34del		p.X20_splice	ENST00000349496	NM_001904.3	20																																																																															
INPP4B	8821	MSKCC	GRCh37	4	142950045	142950045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	96	553	0	ENST00000262992.4:c.2665G>C	p.Val889Leu	p.V889L	ENST00000262992	NM_001101669.1	889	Gta/Cta																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589547	67589582	+	inframe_deletion	In_Frame_Del	DEL	TCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAAT	TCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAAT	-			P-0035154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	45	229	0	ENST00000274335.5:c.1311_1346del	p.Lys438_Leu449del	p.K438_L449del	ENST00000274335		437	gTCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAATta/gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	245	691	5	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411216	63411216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	101	668	2	ENST00000330258.3:c.1951G>A	p.Val651Ile	p.V651I	ENST00000330258	NM_152424.3	651	Gtc/Atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	193	568	2	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782071	9782071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	118	700	4	ENST00000377346.4:c.2094C>A	p.Phe698Leu	p.F698L	ENST00000377346	NM_005026.3	698	ttC/ttA																																																																														
PGR	5241	MSKCC	GRCh37	11	100999732	100999732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	223	685	4	ENST00000325455.5:c.70G>A	p.Gly24Arg	p.G24R	ENST00000325455	NM_001202474.3	24	Gga/Aga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492904	56492905	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	187	328	2	ENST00000407977.2:c.33_34dup	p.Leu12ProfsTer7	p.L12Pfs*7	ENST00000407977		12	ctc/cCCtc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17389843	17389843	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	26	816	0	ENST00000359435.4:c.976G>C	p.Glu326Gln	p.E326Q	ENST00000359435	NM_001033549.1	326	Gag/Cag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165684	47165684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	60	659	0	ENST00000409792.3:c.442C>G	p.Leu148Val	p.L148V	ENST00000409792	NM_014159.6	148	Ctg/Gtg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851565	134851565	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	37	501	0	ENST00000398015.3:c.971C>G	p.Ser324Ter	p.S324*	ENST00000398015	NM_004441.4	324	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	58	804	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795019	242795019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	52	1045	1	ENST00000334409.5:c.190G>A	p.Val64Met	p.V64M	ENST00000334409	NM_005018.2	64	Gtg/Atg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476388	88476388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	36	538	0	ENST00000360948.2:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000360948	NM_001012338.2	582	Cgg/Tgg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188187	32188187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	63	612	3	ENST00000375023.3:c.1154G>A	p.Arg385His	p.R385H	ENST00000375023	NM_004557.3	385	cGc/cAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472558	88472558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	29	599	1	ENST00000360948.2:c.1997G>A	p.Gly666Asp	p.G666D	ENST00000360948	NM_001012338.2	666	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0035209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	90	625	0	ENST00000269305.4:c.994-2A>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	235	827	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	39	323	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	105	419	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332607	153332607	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	257	467	0	ENST00000281708.4:c.349G>T	p.Glu117Ter	p.E117*	ENST00000281708	NM_033632.3	117	Gag/Tag																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967567	26967567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	821	530	1	ENST00000381527.3:c.710G>A	p.Arg237Gln	p.R237Q	ENST00000381527	NM_001260.1	237	cGa/cAa																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633551	69633551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	38	335	1	ENST00000334134.2:c.151G>A	p.Ala51Thr	p.A51T	ENST00000334134	NM_005247.2	51	Gcc/Acc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857779	9857779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	126	633	0	ENST00000330684.3:c.3622C>T	p.Arg1208Trp	p.R1208W	ENST00000330684	NM_001134407.1	1208	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	140	430	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
CCND2	894	MSKCC	GRCh37	12	4383252	4383252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	54	355	3	ENST00000261254.3:c.46C>T	p.Arg16Trp	p.R16W	ENST00000261254	NM_001759.3	16	Cgg/Tgg																																																																														
NF2	4771	MSKCC	GRCh37	22	30061031	30061031	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	164	442	0	ENST00000338641.4:c.863C>G	p.Ser288Ter	p.S288*	ENST00000338641	NM_000268.3	288	tCa/tGa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098380	11098380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	76	573	1	ENST00000344626.4:c.898C>T	p.Gln300Ter	p.Q300*	ENST00000344626	NM_003072.3	300	Cag/Tag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18274166	18274166	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	56	433	0	ENST00000222254.8:c.1384C>T	p.Gln462Ter	p.Q462*	ENST00000222254	NM_005027.3	462	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259540	16259540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	67	417	0	ENST00000375759.3:c.6805G>A	p.Val2269Ile	p.V2269I	ENST00000375759	NM_015001.2	2269	Gta/Ata																																																																														
ARID2	196528	MSKCC	GRCh37	12	46125006	46125006	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	50	274	0	ENST00000334344.6:c.193G>C	p.Glu65Gln	p.E65Q	ENST00000334344	NM_152641.2	65	Gag/Cag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121912	2121912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	99	827	2	ENST00000219476.3:c.2074G>T	p.Val692Phe	p.V692F	ENST00000219476	NM_000548.3	692	Gtc/Ttc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225924	2225927	+	frameshift_variant	Frame_Shift_Del	DEL	TGTC	TGTC	-			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	73	731	0	ENST00000326181.6:c.1719_1722del	p.Cys574AlafsTer59	p.C574Afs*59	ENST00000326181	NM_032271.2	572	atTGTC/at																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273900	10273901	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	92	700	2	ENST00000330684.3:c.368_369delinsAA	p.Pro123Gln	p.P123Q	ENST00000330684	NM_001134407.1	123	cCC/cAA																																																																														
STK11	6794	MSKCC	GRCh37	19	1207131	1207131	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	104	752	0	ENST00000326873.7:c.219del	p.Cys73Ter	p.C73*	ENST00000326873	NM_000455.4	73	tgC/tg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602562	10602562	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	69	657	0	ENST00000171111.5:c.1016T>C	p.Leu339Pro	p.L339P	ENST00000171111	NM_203500.1	339	cTc/cCc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098392	11098392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	72	545	0	ENST00000344626.4:c.910C>G	p.Pro304Ala	p.P304A	ENST00000344626	NM_003072.3	304	Ccc/Gcc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287202	33287202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	81	530	0	ENST00000374542.5:c.1895C>G	p.Ser632Cys	p.S632C	ENST00000374542	NM_001141970.1	632	tCt/tGt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33289085	33289085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	104	645	0	ENST00000374542.5:c.467C>G	p.Ser156Cys	p.S156C	ENST00000374542	NM_001141970.1	156	tCt/tGt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932895	39932896	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	63	619	3	ENST00000378444.4:c.1703_1704delinsTT	p.Ala568Val	p.A568V	ENST00000378444	NM_001123385.1	568	gCC/gTT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039323	47039350	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCTGGGGGCCCTGGCACCCTACGCGG	ATCCTGGGGGCCCTGGCACCCTACGCGG	-			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	102	709	0	ENST00000329236.7:c.715_742del	p.Ile239CysfsTer10	p.I239Cfs*10	ENST00000329236	NM_001204466.1	239	ATCCTGGGGGCCCTGGCACCCTACGCGGtg/tg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410546	63410546	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	88	722	1	ENST00000330258.3:c.2621del	p.Gly874AspfsTer102	p.G874Dfs*102	ENST00000330258	NM_152424.3	874	gGa/ga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	464	605	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720650	89720650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	60	302	0	ENST00000371953.3:c.802-1G>T		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
WT1	7490	MSKCC	GRCh37	11	32456864	32456864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	142	339	0	ENST00000332351.3:c.28C>T	p.Pro10Ser	p.P10S	ENST00000332351	NM_024426.4	10	Ccg/Tcg																																																																														
CBL	867	MSKCC	GRCh37	11	119170256	119170256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	118	287	0	ENST00000264033.4:c.2486G>A	p.Arg829Gln	p.R829Q	ENST00000264033	NM_005188.3	829	cGg/cAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435434	18435434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	118	275	0	ENST00000266497.5:c.419G>A	p.Arg140Lys	p.R140K	ENST00000266497		140	aGa/aAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28877393	28877393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	205	442	1	ENST00000282397.4:c.3928G>A	p.Asp1310Asn	p.D1310N	ENST00000282397	NM_002019.4	1310	Gac/Aac																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527723	103527723	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	88	290	0	ENST00000355739.4:c.3031A>T	p.Lys1011Ter	p.K1011*	ENST00000355739	NM_000123.3	1011	Aag/Tag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858390	9858390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	215	522	0	ENST00000330684.3:c.3011C>T	p.Ser1004Phe	p.S1004F	ENST00000330684	NM_001134407.1	1004	tCc/tTc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14042182	14042182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	113	264	0	ENST00000311895.7:c.2729C>T	p.Ser910Leu	p.S910L	ENST00000311895	NM_005236.2	910	tCa/tTa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615725	1615725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	270	802	0	ENST00000344749.5:c.1546G>A	p.Glu516Lys	p.E516K	ENST00000344749	NM_001136139.2	516	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41400109	41400109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	190	540	0	ENST00000373198.4:c.650G>A	p.Gly217Glu	p.G217E	ENST00000373198	NM_133170.3	217	gGg/gAg																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119720906	119720906	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	202	459	0	ENST00000316626.5:c.269A>G	p.Asp90Gly	p.D90G	ENST00000316626		90	gAc/gGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	59	122	0				ENST00000310581	NM_198253.2																																																																																
PDGFRB	5159	MSKCC	GRCh37	5	149512446	149512446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	217	562	1	ENST00000261799.4:c.994C>T	p.Arg332Trp	p.R332W	ENST00000261799	NM_002609.3	332	Cgg/Tgg																																																																														
STK19	8859	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	301	682	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874913	151874913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	182	372	0	ENST00000262189.6:c.7625C>T	p.Ser2542Leu	p.S2542L	ENST00000262189	NM_170606.2	2542	tCa/tTa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978530	70978530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	374	507	0	ENST00000276594.2:c.1123G>A	p.Asp375Asn	p.D375N	ENST00000276594	NM_024504.3	375	Gat/Aat																																																																														
AR	367	MSKCC	GRCh37	X	66765350	66765350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	212	709	1	ENST00000374690.3:c.362C>T	p.Ser121Leu	p.S121L	ENST00000374690	NM_000044.3	121	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	321	679	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	362	216	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593364	67593365	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0035570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	66	347	0	ENST00000274335.5:c.2111_2113dup	p.Val704_Gln705insLeu	p.V704_Q705insL	ENST00000274335		704	gtg/gTGCtg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	130	544	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631508	28631508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	89	464	0	ENST00000241453.7:c.460A>G	p.Ile154Val	p.I154V	ENST00000241453	NM_004119.2	154	Ata/Gta																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061197	38061235	+	inframe_deletion	In_Frame_Del	DEL	CTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAACATGTT	CTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAACATGTT	-			P-0035592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	202	383	0	ENST00000250448.2:c.754_792del	p.Asn252_Lys264del	p.N252_K264del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGCTACTTGCGCCGCCAGAAG/-																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505516	25505516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	145	763	1	ENST00000264709.3:c.242A>G	p.Asp81Gly	p.D81G	ENST00000264709	NM_175629.2	81	gAc/gGc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211626	46211626	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004752-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			531	79	574	2	ENST00000334344.6:c.592A>T	p.Lys198Ter	p.K198*	ENST00000334344	NM_152641.2	198	Aaa/Taa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509743	106509744	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TACGAAAGCCTTGCTCTGGCATTTTAGATACGAAAGCC			P-0004752-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			784	59	753	0	ENST00000359195.3:c.1749_1750insGCTCTGGCATTTTAGATACGAAAGCCTACGAAAGCCTT	p.Lys584AlafsTer5	p.K584Afs*5	ENST00000359195	NM_002649.2	579	-/TACGAAAGCCTTGCTCTGGCATTTTAGATACGAAAGCC																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509773	106509787	+	inframe_deletion	In_Frame_Del	DEL	TCCTAAGCTATTTAG	TCCTAAGCTATTTAG	-			P-0004752-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			823	95	904	0	ENST00000359195.3:c.1768_1782del	p.Pro590_Ser594del	p.P590_S594del	ENST00000359195	NM_002649.2	589	taTCCTAAGCTATTTAGt/tat																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			675	148	697	0	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			693	160	738	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0022873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	156	268	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138382756	138382756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	104	495	1	ENST00000289153.2:c.2788del	p.Thr930LeufsTer62	p.T930Lfs*62	ENST00000289153	NM_006219.2	930	Act/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578408	7578434	+	inframe_deletion	In_Frame_Del	DEL	CCTCACAACCTCCGTCATGTGCTGTGA	CCTCACAACCTCCGTCATGTGCTGTGA	-			P-0022873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	120	669	0	ENST00000269305.4:c.496_522del	p.Ser166_Arg174del	p.S166_R174del	ENST00000269305	NM_001126112.2	166	TCACAGCACATGACGGAGGTTGTGAGG/-																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10284577	10284577	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	52	506	0	ENST00000340748.4:c.605A>G	p.Glu202Gly	p.E202G	ENST00000340748		202	gAg/gGg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31451736	31451736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	65	359	0	ENST00000344624.3:c.2586G>T	p.Met862Ile	p.M862I	ENST00000344624		862	atG/atT																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992762	68992762	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			793	266	579	0	ENST00000288368.4:c.1727A>T	p.His576Leu	p.H576L	ENST00000288368	NM_024870.2	576	cAt/cTt																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249857	110249857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	107	517	0	ENST00000374672.4:c.818C>T	p.Thr273Met	p.T273M	ENST00000374672	NM_004235.4	273	aCg/aTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281623	15281623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			817	170	696	0	ENST00000263388.2:c.4750C>G	p.Leu1584Val	p.L1584V	ENST00000263388	NM_000435.2	1584	Ctg/Gtg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213272	36213273	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0022873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			836	134	673	0	ENST00000222270.7:c.2469_2470delinsGA	p.Gly824Arg	p.G824R	ENST00000222270	NM_014727.1	823	ggAGgg/ggGAgg																																																																														
TET2	54790	MSKCC	GRCh37	4	106156205	106156205	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144422103		P-0022873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	83	343	0	ENST00000380013.4:c.1106G>A	p.Arg369Gln	p.R369Q	ENST00000380013	NM_001127208.2	369	cGg/cAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411759	63411760	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0022873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	35	422	1	ENST00000330258.3:c.1407_1408delinsGT	p.Gly470Cys	p.G470C	ENST00000330258	NM_152424.3	469	gaAGgt/gaGTgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	381	587	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	125	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	335	398	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	248	589	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	145	351	3	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	145	351	3	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	145	351	3	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1255	228	625	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5221107	5221107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	206	586	0	ENST00000357368.4:c.3359A>G	p.Asn1120Ser	p.N1120S	ENST00000357368	NM_002850.3	1120	aAc/aGc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1920322	1920322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	264	667	1	ENST00000382891.5:c.1382T>C	p.Leu461Ser	p.L461S	ENST00000382891	NM_133335.3	461	tTg/tCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	88	620	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602354	10602354	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	220	1063	1	ENST00000171111.5:c.1224del	p.Met409Ter	p.M409*	ENST00000171111	NM_203500.1	408	ccC/cc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	216	507	0	ENST00000329236.7:c.1459+1G>A		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																															
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	128	575	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
TBX3	6926	MSKCC	GRCh37	12	115112197	115112197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	98	550	0	ENST00000257566.3:c.1543G>T	p.Gly515Trp	p.G515W	ENST00000257566	NM_016569.3	515	Ggg/Tgg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46583304	46583304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	127	402	1	ENST00000263734.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000263734	NM_001430.4	78	Gag/Aag																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942049	81942049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	79	560	0	ENST00000359376.3:c.1586G>A	p.Gly529Glu	p.G529E	ENST00000359376	NM_002661.3	529	gGg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971206	21971206	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	94	375	0	ENST00000304494.5:c.152T>A	p.Val51Asp	p.V51D	ENST00000304494	NM_000077.4	51	gTc/gAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971206	21971206	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	94	375	0	ENST00000304494.5:c.152T>A	p.Val51Asp	p.V51D	ENST00000304494	NM_000077.4	51	gTc/gAc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752341	57752341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	45	573	0	ENST00000274289.3:c.1232C>T	p.Pro411Leu	p.P411L	ENST00000274289	NM_006622.3	411	cCc/cTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636186	28636186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	135	578	0	ENST00000241453.7:c.186C>A	p.Asp62Glu	p.D62E	ENST00000241453	NM_004119.2	62	gaC/gaA																																																																														
MITF	4286	MSKCC	GRCh37	3	70014070	70014070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	126	641	0	ENST00000352241.4:c.1234G>T	p.Val412Leu	p.V412L	ENST00000352241	NM_198159.2	412	Gtg/Ttg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138680	55138680	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	100	482	0	ENST00000257290.5:c.1357A>C	p.Ile453Leu	p.I453L	ENST00000257290	NM_006206.4	453	Att/Ctt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709571	176709571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	71	457	0	ENST00000439151.2:c.5998A>T	p.Thr2000Ser	p.T2000S	ENST00000439151	NM_022455.4	2000	Acc/Tcc																																																																														
ABL1	25	MSKCC	GRCh37	9	133738155	133738155	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	50	493	0	ENST00000318560.5:c.555C>A	p.Tyr185Ter	p.Y185*	ENST00000318560	NM_005157.4	185	taC/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	390	413	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243858956	243858957	+	stop_gained	Nonsense_Mutation	DNP	CT	CT	AC			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	69	396	1	ENST00000263826.5:c.108_109delinsGT	p.Ile36_Gly37delinsMetTer	p.I36_G37delinsM*	ENST00000263826	NM_005465.4	36	atAGga/atGTga																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64137199	64137199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	168	367	0	ENST00000334205.4:c.1631G>T	p.Gly544Val	p.G544V	ENST00000334205	NM_003942.2	544	gGg/gTg																																																																														
ATM	472	MSKCC	GRCh37	11	108204637	108204637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	98	189	0	ENST00000278616.4:c.7952A>G	p.Gln2651Arg	p.Q2651R	ENST00000278616	NM_000051.3	2651	cAg/cGg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46123888	46123909	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAGAGTCACTACTTTAGGCG	ACCAGAGTCACTACTTTAGGCG	-			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	37	210	0	ENST00000334344.6:c.154_175del	p.Thr52AspfsTer31	p.T52Dfs*31	ENST00000334344	NM_152641.2	52	ACCAGAGTCACTACTTTAGGCGga/ga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37868668	37868668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1303	103	417	0	ENST00000269571.5:c.1115G>A	p.Gly372Glu	p.G372E	ENST00000269571		372	gGg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921571	178921571	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	56	256	0	ENST00000263967.3:c.1053T>G	p.Ile351Met	p.I351M	ENST00000263967	NM_006218.2	351	atT/atG																																																																														
KDR	3791	MSKCC	GRCh37	4	55955043	55955043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	73	327	0	ENST00000263923.4:c.3502G>A	p.Ala1168Thr	p.A1168T	ENST00000263923	NM_002253.2	1168	Gct/Act																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188754	32188754	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	73	364	0	ENST00000375023.3:c.799+1G>T		p.X267_splice	ENST00000375023	NM_004557.3	267																																																																															
TAP1	6890	MSKCC	GRCh37	6	32821139	32821139	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	266	457	1	ENST00000354258.4:c.455G>A	p.Trp152Ter	p.W152*	ENST00000354258	NM_000593.5	152	tGg/tAg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932735	39932735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	129	652	0	ENST00000378444.4:c.1864C>A	p.Pro622Thr	p.P622T	ENST00000378444	NM_001123385.1	622	Cca/Aca																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	94	436	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222201	2222201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	143	556	0	ENST00000326181.6:c.485C>T	p.Pro162Leu	p.P162L	ENST00000326181	NM_032271.2	162	cCc/cTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	187	382	1	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325105	123325105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	153	666	0	ENST00000358487.5:c.223G>A	p.Asp75Asn	p.D75N	ENST00000358487	NM_000141.4	75	Gat/Aat																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729934	41729934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			658	220	678	0	ENST00000242208.4:c.595G>A	p.Gly199Arg	p.G199R	ENST00000242208	NM_002192.2	199	Ggg/Agg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129869	55129869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			819	159	605	0	ENST00000257290.5:c.403G>A	p.Asp135Asn	p.D135N	ENST00000257290	NM_006206.4	135	Gat/Aat																																																																														
NF1	4763	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			784	71	502	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176666786	176666786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	72	314	0	ENST00000439151.2:c.4222C>T	p.Pro1408Ser	p.P1408S	ENST00000439151	NM_022455.4	1408	Cca/Tca																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120458690	120458690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			565	174	574	0	ENST00000256646.2:c.6655C>T	p.Pro2219Ser	p.P2219S	ENST00000256646	NM_024408.3	2219	Ccc/Tcc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470977	25470977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	83	636	0	ENST00000264709.3:c.784C>T	p.Pro262Ser	p.P262S	ENST00000264709	NM_175629.2	262	Cct/Tct																																																																														
INHA	3623	MSKCC	GRCh37	2	220439769	220439769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			653	106	709	0	ENST00000243786.2:c.622C>T	p.Arg208Trp	p.R208W	ENST00000243786	NM_002191.3	208	Cgg/Tgg																																																																														
KDR	3791	MSKCC	GRCh37	4	55974004	55974004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			746	174	517	1	ENST00000263923.4:c.1312G>A	p.Gly438Ser	p.G438S	ENST00000263923	NM_002253.2	438	Ggc/Agc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38954953	38954953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	90	282	0	ENST00000357387.3:c.2620C>T	p.Pro874Ser	p.P874S	ENST00000357387	NM_152756.3	874	Cct/Tct																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197396	26197396	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	92	360	0	ENST00000356476.2:c.83A>T	p.Lys28Met	p.K28M	ENST00000356476		28	aAg/aTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956991	2956991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	200	503	0	ENST00000396946.4:c.2636C>T	p.Ser879Leu	p.S879L	ENST00000396946	NM_032415.4	879	tCa/tTa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367239	50367239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	81	259	0	ENST00000331340.3:c.46G>A	p.Glu16Lys	p.E16K	ENST00000331340	NM_006060.4	16	Gaa/Aaa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372059	55372059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	26	224	0	ENST00000297316.4:c.749C>A	p.Thr250Asn	p.T250N	ENST00000297316	NM_022454.3	250	aCc/aAc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123325128	123325128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			651	136	639	0	ENST00000358487.5:c.200C>A	p.Ala67Asp	p.A67D	ENST00000358487	NM_000141.4	67	gCc/gAc																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81925096	81925096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	139	472	3	ENST00000359376.3:c.887C>T	p.Ser296Leu	p.S296L	ENST00000359376	NM_002661.3	296	tCa/tTa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739007	40739007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	121	443	0	ENST00000373198.4:c.3277C>T	p.Pro1093Ser	p.P1093S	ENST00000373198	NM_133170.3	1093	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	310	648	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796014	78796014	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	215	592	0	ENST00000306801.3:c.904C>G	p.Leu302Val	p.L302V	ENST00000306801	NM_020761.2	302	Ctg/Gtg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664925	138664925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	98	188	0	ENST00000330315.3:c.640C>T	p.Pro214Ser	p.P214S	ENST00000330315	NM_023067.3	214	Ccc/Tcc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412366	139412366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	117	668	0	ENST00000277541.6:c.1279G>T	p.Gly427Cys	p.G427C	ENST00000277541	NM_017617.3	427	Ggc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	24	499	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248528	212248528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	184	650	1	ENST00000342788.4:c.3739C>A	p.Leu1247Met	p.L1247M	ENST00000342788	NM_005235.2	1247	Ctg/Atg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434426	110434426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	49	485	0	ENST00000375856.3:c.3975C>G	p.Phe1325Leu	p.F1325L	ENST00000375856	NM_003749.2	1325	ttC/ttG																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71949198	71949198	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	58	766	0	ENST00000298229.2:c.3665G>A	p.Trp1222Ter	p.W1222*	ENST00000298229	NM_001567.3	1222	tGg/tAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793433	18793433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	115	518	0	ENST00000266497.5:c.4130G>C	p.Arg1377Pro	p.R1377P	ENST00000266497		1377	cGt/cCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577087	7577114	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCGCCGGTCTCTCCCAGGACAGGCAC	GTGCGCCGGTCTCTCCCAGGACAGGCAC	-			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	99	743	1	ENST00000269305.4:c.824_851del	p.Cys275Ter	p.C275*	ENST00000269305	NM_001126112.2	275	tGTGCCTGTCCTGGGAGAGACCGGCGCACa/ta																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379742	17379742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	91	752	0	ENST00000359435.4:c.127G>T	p.Ala43Ser	p.A43S	ENST00000359435	NM_001033549.1	43	Gcc/Tcc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25466830	25466830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	112	539	0	ENST00000264709.3:c.1873C>G	p.Pro625Ala	p.P625A	ENST00000264709	NM_175629.2	625	Cct/Gct																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22221657	22221657	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	40	134	0	ENST00000215832.6:c.74A>T	p.Tyr25Phe	p.Y25F	ENST00000215832	NM_002745.4	25	tAc/tTc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182679134	182679134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	145	565	0	ENST00000292782.4:c.400A>G	p.Ile134Val	p.I134V	ENST00000292782	NM_020640.2	134	Ata/Gta																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056602	26056602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	52	255	0	ENST00000343677.2:c.55C>T	p.Pro19Ser	p.P19S	ENST00000343677	NM_005319.3	19	Cct/Tct																																																																														
JAK2	3717	MSKCC	GRCh37	9	5078442	5078442	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	73	431	0	ENST00000381652.3:c.2129A>T	p.Asp710Val	p.D710V	ENST00000381652	NM_004972.3	710	gAc/gTc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521355	8521355	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200703886		P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	123	647	1	ENST00000356435.5:c.883A>G	p.Arg295Gly	p.R295G	ENST00000356435		295	Aga/Gga																																																																														
MED12	9968	MSKCC	GRCh37	X	70352801	70352801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	70	328	0	ENST00000374080.3:c.4522C>T	p.His1508Tyr	p.H1508Y	ENST00000374080		1508	Cac/Tac																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0029922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	292	866	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	289	1036	1	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0035475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	87	598	0				ENST00000310581	NM_198253.2																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139407554	139407555	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0035475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	321	1193	0	ENST00000277541.6:c.2385_2386del	p.Ala796ValfsTer12	p.A796Vfs*12	ENST00000277541	NM_017617.3	795	tgTGcg/tgcg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	69	409	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	27	433	1				ENST00000310581	NM_198253.2																																																																																
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0035478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	73	513	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244286	46244286	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	41	468	0	ENST00000334344.6:c.2380C>T	p.Gln794Ter	p.Q794*	ENST00000334344	NM_152641.2	794	Caa/Taa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178710	32178710	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	61	663	0	ENST00000375023.3:c.2684T>A	p.Ile895Lys	p.I895K	ENST00000375023	NM_004557.3	895	aTa/aAa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	322	558	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156742	20156742	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0035479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	283	209	0	ENST00000379607.5:c.17-2A>G		p.X6_splice	ENST00000379607	NM_001412.3	6																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	373	503	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0035577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	578	835	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
TCF3	6929	MSKCC	GRCh37	19	1625652	1625652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	261	850	1	ENST00000344749.5:c.422C>T	p.Ser141Leu	p.S141L	ENST00000344749	NM_001136139.2	141	tCg/tTg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535316	66535316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	340	624	4	ENST00000273854.3:c.145G>A	p.Ala49Thr	p.A49T	ENST00000273854	NM_004439.5	49	Gca/Aca																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076813	72076813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	396	367	1	ENST00000357731.5:c.684G>T	p.Gln228His	p.Q228H	ENST00000357731	NM_173808.2	228	caG/caT																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610010	81610010	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	196	340	0	ENST00000298171.2:c.1608G>C	p.Arg536Ser	p.R536S	ENST00000298171	NM_000369.2	536	agG/agC																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81972491	81972491	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	153	463	0	ENST00000359376.3:c.3284A>C	p.Asp1095Ala	p.D1095A	ENST00000359376	NM_002661.3	1095	gAc/gCc																																																																														
NF1	4763	MSKCC	GRCh37	17	29663777	29663777	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	395	677	0	ENST00000358273.4:c.6272A>G	p.Asn2091Ser	p.N2091S	ENST00000358273	NM_001042492.2	2091	aAc/aGc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851709	134851709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	265	509	0	ENST00000398015.3:c.1115G>A	p.Arg372His	p.R372H	ENST00000398015	NM_004441.4	372	cGc/cAc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001287	150001287	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	281	611	0	ENST00000253339.5:c.2317C>T	p.Gln773Ter	p.Q773*	ENST00000253339		773	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	485	802	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45423069	45423069	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	22	336	0	ENST00000262160.6:c.59A>T	p.Lys20Met	p.K20M	ENST00000262160	NM_005901.5	20	aAg/aTg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561502	9561502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	154	538	0	ENST00000353224.5:c.280G>T	p.Val94Leu	p.V94L	ENST00000353224	NM_177990.2	94	Gtg/Ttg																																																																														
ROS1	6098	MSKCC	GRCh37	6	117739647	117739647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	214	333	0	ENST00000368508.3:c.146C>A	p.Thr49Lys	p.T49K	ENST00000368508	NM_002944.2	49	aCa/aAa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971279	13971279	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	305	533	0	ENST00000405192.2:c.650A>T	p.Glu217Val	p.E217V	ENST00000405192	NM_001163147.1	217	gAg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	129	620	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																														
PARP1	142	MSKCC	GRCh37	1	226550800	226550800	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0035584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	98	535	0	ENST00000366794.5:c.2848G>C	p.Gly950Arg	p.G950R	ENST00000366794	NM_001618.3	950	Ggt/Cgt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437083	110437083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	24	66	0	ENST00000375856.3:c.1318C>G	p.Pro440Ala	p.P440A	ENST00000375856	NM_003749.2	440	Ccc/Gcc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39644711	39644711	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	74	283	0	ENST00000262039.4:c.2440A>G	p.Asn814Asp	p.N814D	ENST00000262039	NM_002647.2	814	Aat/Gat																																																																														
EP300	2033	MSKCC	GRCh37	22	41523747	41523747	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	86	587	0	ENST00000263253.7:c.1163G>C	p.Cys388Ser	p.C388S	ENST00000263253	NM_001429.3	388	tGc/tCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	83	623	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
NCOR1	9611	MSKCC	GRCh37	17	15989600	15989600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	37	272	0	ENST00000268712.3:c.3173C>T	p.Ser1058Leu	p.S1058L	ENST00000268712	NM_006311.3	1058	tCa/tTa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120255	70120278	+	inframe_deletion	In_Frame_Del	DEL	CTACAGCCCCTTCAACCTCCCACA	CTACAGCCCCTTCAACCTCCCACA	-			P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	108	838	0	ENST00000245479.2:c.1268_1291del	p.Phe423_Pro430del	p.F423_P430del	ENST00000245479	NM_000346.3	419	gcCTACAGCCCCTTCAACCTCCCACAc/gcc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379622	17379622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	21	334	0	ENST00000359435.4:c.7G>A	p.Val3Met	p.V3M	ENST00000359435	NM_001033549.1	3	Gtg/Atg																																																																														
ALK	238	MSKCC	GRCh37	2	30143113	30143113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	71	620	0	ENST00000389048.3:c.413C>A	p.Ala138Asp	p.A138D	ENST00000389048	NM_004304.4	138	gCc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112174201	112174201	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	59	329	0	ENST00000257430.4:c.2910del	p.Ser970ArgfsTer10	p.S970Rfs*10	ENST00000257430	NM_000038.5	970	agT/ag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522328	157522328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	83	763	0	ENST00000346085.5:c.4600C>T	p.Arg1534Cys	p.R1534C	ENST00000346085	NM_020732.3	1534	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	401	488	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779746	3779747	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	220	698	2	ENST00000262367.5:c.5301dup	p.Arg1768ThrfsTer198	p.R1768Tfs*198	ENST00000262367	NM_004380.2	1767	-/A																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692889	89692889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	209	380	0	ENST00000371953.3:c.373A>G	p.Lys125Glu	p.K125E	ENST00000371953	NM_000314.4	125	Aaa/Gaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			633	80	366	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
CIC	23152	MSKCC	GRCh37	19	42796616	42796616	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			561	462	541	0	ENST00000575354.2:c.3173C>G	p.Ser1058Ter	p.S1058*	ENST00000575354	NM_015125.3	1058	tCa/tGa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389380	8389380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	193	518	1	ENST00000356435.5:c.4238C>A	p.Ala1413Asp	p.A1413D	ENST00000356435		1413	gCc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	310	550	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
SPEN	23013	MSKCC	GRCh37	1	16256958	16256958	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			726	329	664	0	ENST00000375759.3:c.4223T>G	p.Leu1408Trp	p.L1408W	ENST00000375759	NM_015001.2	1408	tTg/tGg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937882	36937882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1188	510	827	0	ENST00000361632.4:c.954G>C	p.Trp318Cys	p.W318C	ENST00000361632		318	tgG/tgC																																																																														
JAK1	3716	MSKCC	GRCh37	1	65301112	65301112	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	70	313	1	ENST00000342505.4:c.3336A>T	p.Lys1112Asn	p.K1112N	ENST00000342505	NM_002227.2	1112	aaA/aaT																																																																														
PAK1	5058	MSKCC	GRCh37	11	77034348	77034348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			795	342	612	0	ENST00000356341.3:c.1609G>A	p.Ala537Thr	p.A537T	ENST00000356341	NM_002576.4	537	Gct/Act																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428426	49428426	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	347	632	2	ENST00000301067.7:c.10379A>T	p.Gln3460Leu	p.Q3460L	ENST00000301067	NM_003482.3	3460	cAg/cTg																																																																														
POLE	5426	MSKCC	GRCh37	12	133248806	133248806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			820	302	599	2	ENST00000320574.5:c.1789G>A	p.Glu597Lys	p.E597K	ENST00000320574	NM_006231.2	597	Gaa/Aaa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134809	41134809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	212	415	0	ENST00000379561.5:c.819G>C	p.Lys273Asn	p.K273N	ENST00000379561	NM_002015.3	273	aaG/aaC																																																																														
MGA	23269	MSKCC	GRCh37	15	41961903	41961903	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	186	375	0	ENST00000219905.7:c.811G>T	p.Gly271Ter	p.G271*	ENST00000219905	NM_001164273.1	271	Gga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712698	43712698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1207	402	794	1	ENST00000382044.4:c.4486G>T	p.Val1496Phe	p.V1496F	ENST00000382044	NM_001141980.1	1496	Gtt/Ttt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43783894	43783894	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			964	352	659	0	ENST00000382044.4:c.344A>T	p.Gln115Leu	p.Q115L	ENST00000382044	NM_001141980.1	115	cAg/cTg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423526	88423526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	311	772	0	ENST00000360948.2:c.2309C>A	p.Pro770Gln	p.P770Q	ENST00000360948	NM_001012338.2	770	cCa/cAa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17118562	17118562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	348	607	0	ENST00000285071.4:c.1369G>A	p.Asp457Asn	p.D457N	ENST00000285071	NM_144997.5	457	Gac/Aac																																																																														
STK11	6794	MSKCC	GRCh37	19	1207093	1207093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			828	462	760	0	ENST00000326873.7:c.181G>C	p.Gly61Arg	p.G61R	ENST00000326873	NM_000455.4	61	Ggc/Cgc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1627399	1627399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	406	702	0	ENST00000344749.5:c.325G>C	p.Ala109Pro	p.A109P	ENST00000344749	NM_001136139.2	109	Gcc/Ccc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11105555	11105555	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			753	378	761	0	ENST00000344626.4:c.1471A>T	p.Arg491Ter	p.R491*	ENST00000344626	NM_003072.3	491	Aga/Tga																																																																														
CALR	811	MSKCC	GRCh37	19	13050034	13050034	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	237	483	0	ENST00000316448.5:c.178G>T	p.Glu60Ter	p.E60*	ENST00000316448	NM_004343.3	60	Gag/Tag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229351	36229351	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	494	519	0	ENST00000222270.7:c.8041C>G	p.Leu2681Val	p.L2681V	ENST00000222270	NM_014727.1	2681	Ctg/Gtg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607819	46607819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1304	449	737	0	ENST00000263734.3:c.2008C>T	p.Pro670Ser	p.P670S	ENST00000263734	NM_001430.4	670	Cct/Tct																																																																														
XPO1	7514	MSKCC	GRCh37	2	61724037	61724037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			746	201	549	0	ENST00000401558.2:c.865C>G	p.Leu289Val	p.L289V	ENST00000401558	NM_003400.3	289	Ctg/Gtg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248352	212248352	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			329	57	224	0	ENST00000342788.4:c.3915T>A	p.Asn1305Lys	p.N1305K	ENST00000342788	NM_005235.2	1305	aaT/aaA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251712	212251712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			619	85	386	0	ENST00000342788.4:c.3347C>A	p.Ala1116Glu	p.A1116E	ENST00000342788	NM_005235.2	1116	gCa/gAa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31389096	31389096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			543	803	476	0	ENST00000328111.2:c.2009G>C	p.Arg670Pro	p.R670P	ENST00000328111	NM_006892.3	670	cGg/cCg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165045	47165045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	98	447	0	ENST00000409792.3:c.1081G>C	p.Glu361Gln	p.E361Q	ENST00000409792	NM_014159.6	361	Gag/Cag																																																																														
APC	324	MSKCC	GRCh37	5	112177611	112177611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	182	382	0	ENST00000257430.4:c.6320G>T	p.Gly2107Val	p.G2107V	ENST00000257430	NM_000038.5	2107	gGt/gTt																																																																														
PIM1	5292	MSKCC	GRCh37	6	37138974	37138974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1286	400	735	0	ENST00000373509.5:c.314G>A	p.Arg105Lys	p.R105K	ENST00000373509	NM_002648.3	105	aGg/aAg																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793876	89793876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	99	403	1	ENST00000336032.3:c.945G>A	p.Met315Ile	p.M315I	ENST00000336032	NM_006813.2	315	atG/atA																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450250	50450250	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			765	260	506	0	ENST00000331340.3:c.434T>A	p.Phe145Tyr	p.F145Y	ENST00000331340	NM_006060.4	145	tTc/tAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151848645	151848645	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	127	335	0	ENST00000262189.6:c.12548C>G	p.Ser4183Cys	p.S4183C	ENST00000262189	NM_170606.2	4183	tCt/tGt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69009358	69009358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	462	528	0	ENST00000288368.4:c.2475C>A	p.Tyr825Ter	p.Y825*	ENST00000288368	NM_024870.2	825	taC/taA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340384	8340384	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			866	121	561	0	ENST00000356435.5:c.5212A>G	p.Thr1738Ala	p.T1738A	ENST00000356435		1738	Acc/Gcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471047	8471047	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	106	546	0	ENST00000356435.5:c.3452G>C	p.Arg1151Pro	p.R1151P	ENST00000356435		1151	cGc/cCc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485782	8485782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	149	300	0	ENST00000356435.5:c.3035G>C	p.Arg1012Thr	p.R1012T	ENST00000356435		1012	aGg/aCg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966683	36966683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	233	453	3	ENST00000358127.4:c.643C>A	p.Pro215Thr	p.P215T	ENST00000358127	NM_001280556.1	215	Ccg/Acg																																																																														
ATRX	546	MSKCC	GRCh37	X	76777759	76777759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	264	277	1	ENST00000373344.5:c.6957G>A	p.Met2319Ile	p.M2319I	ENST00000373344	NM_000489.3	2319	atG/atA																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99440101	99440103	+	missense_variant	Missense_Mutation	ONP	AAG	AAG	CAT			P-0020945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			852	275	613	0	ENST00000268035.6:c.1069_1071delinsCAT	p.Lys357His	p.K357H	ENST00000268035	NM_000875.3	357	AAG/CAT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	121	559	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	217	686	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	526	639	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11291084	11291085	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0022639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	101	614	0	ENST00000361445.4:c.2676_2677delinsTT	p.Ala893Ser	p.A893S	ENST00000361445	NM_004958.3	892	ggGGct/ggTTct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425860	49425860	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	420	706	1	ENST00000301067.7:c.12628C>T	p.Gln4210Ter	p.Q4210*	ENST00000301067	NM_003482.3	4210	Cag/Tag																																																																														
POLE	5426	MSKCC	GRCh37	12	133233988	133233988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	429	657	3	ENST00000320574.5:c.3406C>T	p.Arg1136Trp	p.R1136W	ENST00000320574	NM_006231.2	1136	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112174532	112174574	+	frameshift_variant	Frame_Shift_Del	DEL	AGCACTGATGATAAACACCTCAAGTTCCAACCACATTTTGGAC	AGCACTGATGATAAACACCTCAAGTTCCAACCACATTTTGGAC	-			P-0022639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	201	417	0	ENST00000257430.4:c.3245_3287del	p.Thr1082ArgfsTer30	p.T1082Rfs*30	ENST00000257430	NM_000038.5	1081	AGCACTGATGATAAACACCTCAAGTTCCAACCACATTTTGGACag/ag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374580	118374580	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	28	451	0	ENST00000534358.1:c.7973A>C	p.Lys2658Thr	p.K2658T	ENST00000534358	NM_005933.3	2658	aAg/aCg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32971045	32971045	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	33	437	0	ENST00000380152.3:c.9512T>G	p.Ile3171Arg	p.I3171R	ENST00000380152		3171	aTa/aGa																																																																														
STK11	6794	MSKCC	GRCh37	19	1221228	1221228	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	42	937	0	ENST00000326873.7:c.751G>C	p.Gly251Arg	p.G251R	ENST00000326873	NM_000455.4	251	Ggt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	114	795	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	83	835	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40854573	40854573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	78	716	1	ENST00000428826.2:c.2221G>A	p.Glu741Lys	p.E741K	ENST00000428826		741	Gag/Aag																																																																														
ATR	545	MSKCC	GRCh37	3	142254980	142254981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	48	466	0	ENST00000350721.4:c.3788dup	p.Ile1264AspfsTer14	p.I1264Dfs*14	ENST00000350721	NM_001184.3	1263	aag/aaAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	2025	872	2	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55221765	55221765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1328	1262	721	0	ENST00000275493.2:c.809A>G	p.Tyr270Cys	p.Y270C	ENST00000275493	NM_005228.3	270	tAc/tGc																																																																														
RB1	5925	MSKCC	GRCh37	13	48878186	48878186	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	517	223	1	ENST00000267163.4:c.137+1G>A		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27101633	27101633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1655	679	929	0	ENST00000324856.7:c.4915A>G	p.Ile1639Val	p.I1639V	ENST00000324856	NM_006015.4	1639	Atc/Gtc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176055021	176055021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	95	664	0	ENST00000367669.3:c.1032G>C	p.Lys344Asn	p.K344N	ENST00000367669	NM_022457.5	344	aaG/aaC																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226252059	226252059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	381	268	0	ENST00000366813.1:c.7C>G	p.Arg3Gly	p.R3G	ENST00000366813		3	Cgt/Ggt																																																																														
SDHD	6392	MSKCC	GRCh37	11	111957665	111957665	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	687	567	0	ENST00000375549.3:c.34G>C	p.Gly12Arg	p.G12R	ENST00000375549	NM_003002.3	12	Ggt/Cgt																																																																														
RECQL	5965	MSKCC	GRCh37	12	21636323	21636323	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	69	610	0	ENST00000421138.2:c.687T>A	p.His229Gln	p.H229Q	ENST00000421138		229	caT/caA																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562756	21562757	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	1348	672	0	ENST00000382592.4:c.1162_1163delinsTT	p.Ala388Leu	p.A388L	ENST00000382592	NM_014572.2	388	GCg/TTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3819303	3819303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2698	1170	744	0	ENST00000262367.5:c.2932G>A	p.Val978Met	p.V978M	ENST00000262367	NM_004380.2	978	Gtg/Atg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943775	9943775	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2264	436	584	2	ENST00000330684.3:c.1166T>C	p.Val389Ala	p.V389A	ENST00000330684	NM_001134407.1	389	gTg/gCg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641642	23641642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	185	742	0	ENST00000261584.4:c.1833C>G	p.Asp611Glu	p.D611E	ENST00000261584	NM_024675.3	611	gaC/gaG																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618788	37618788	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	298	572	0	ENST00000447079.4:c.464A>C	p.Asn155Thr	p.N155T	ENST00000447079	NM_015083.1	155	aAt/aCt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119971	70119971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	689	382	0	ENST00000245479.2:c.973G>A	p.Ala325Thr	p.A325T	ENST00000245479	NM_000346.3	325	Gcg/Acg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662783	227662783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1317	521	802	2	ENST00000305123.5:c.672G>T	p.Glu224Asp	p.E224D	ENST00000305123	NM_005544.2	224	gaG/gaT																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678720	52678720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	497	688	3	ENST00000394830.3:c.899G>A	p.Arg300Lys	p.R300K	ENST00000394830	NM_018313.4	300	aGg/aAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189582192	189582192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2206	608	522	4	ENST00000264731.3:c.751C>A	p.Arg251Ser	p.R251S	ENST00000264731	NM_003722.4	251	Cgt/Agt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	427453	427453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	474	988	1	ENST00000399788.2:c.2716G>A	p.Glu906Lys	p.E906K	ENST00000399788	NM_001042603.1	906	Gaa/Aaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435228	49435228	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	262	988	0	ENST00000301067.7:c.6325C>T	p.Gln2109Ter	p.Q2109*	ENST00000301067	NM_003482.3	2109	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821595	72821618	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCCGCCGCCGCCGCCA	CCGCCGCCGCCGCCGCCGCCGCCA	-			P-0022893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	47	179	0	ENST00000268489.5:c.10557_10580del	p.Gly3520_Gly3527del	p.G3520_G3527del	ENST00000268489	NM_006885.3	3519	ggTGGCGGCGGCGGCGGCGGCGGCGGc/ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	662	1129	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499486	89499486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	126	691	1	ENST00000336596.2:c.2656G>A	p.Gly886Ser	p.G886S	ENST00000336596	NM_005233.5	886	Ggc/Agc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117679061	117679061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	333	887	0	ENST00000368508.3:c.3760G>T	p.Val1254Phe	p.V1254F	ENST00000368508	NM_002944.2	1254	Gtt/Ttt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467908	50467908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	85	514	0	ENST00000331340.3:c.1143G>T	p.Leu381Phe	p.L381F	ENST00000331340	NM_006060.4	381	ttG/ttT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486128	8486128	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	210	731	1	ENST00000356435.5:c.2689G>C	p.Ala897Pro	p.A897P	ENST00000356435		897	Gcc/Ccc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971073	21971101	+	frameshift_variant	Frame_Shift_Del	DEL	CACCAGCGTGTCCAGGAAGCCCTCCCGGG	CACCAGCGTGTCCAGGAAGCCCTCCCGGG	-			P-0022893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	394	806	0	ENST00000304494.5:c.257_285del	p.Ala86GlyfsTer24	p.A86Gfs*24	ENST00000304494	NM_000077.4	86	gCCCGGGAGGGCTTCCTGGACACGCTGGTG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971073	21971101	+	frameshift_variant	Frame_Shift_Del	DEL	CACCAGCGTGTCCAGGAAGCCCTCCCGGG	CACCAGCGTGTCCAGGAAGCCCTCCCGGG	-			P-0022893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	394	806	0	ENST00000304494.5:c.257_285del	p.Ala86GlyfsTer24	p.A86Gfs*24	ENST00000304494	NM_000077.4	86	gCCCGGGAGGGCTTCCTGGACACGCTGGTG/g																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971073	21971101	+	frameshift_variant	Frame_Shift_Del	DEL	CACCAGCGTGTCCAGGAAGCCCTCCCGGG	CACCAGCGTGTCCAGGAAGCCCTCCCGGG	-			P-0022893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	394	806	0	ENST00000304494.5:c.257_285del	p.Ala86GlyfsTer24	p.A86Gfs*24	ENST00000304494	NM_000077.4	86	gCCCGGGAGGGCTTCCTGGACACGCTGGTG/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0022936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	558	919	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0022936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	133	460	0	ENST00000274335.5:c.1392_1403delTAGATTATATGA	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932065	39932065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	364	438	1	ENST00000378444.4:c.2534C>T	p.Ala845Val	p.A845V	ENST00000378444	NM_001123385.1	845	gCc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	67	453	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944547	71944547	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	116	1019	1	ENST00000298229.2:c.2103del	p.His701GlnfsTer57	p.H701Qfs*57	ENST00000298229	NM_001567.3	701	caC/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25368383	25368383	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	85	537	0	ENST00000256078.4:c.562A>C	p.Ile188Leu	p.I188L	ENST00000256078	NM_033360.2	188	Ata/Cta																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016600	12016600	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	98	623	0	ENST00000353533.5:c.736T>C	p.Cys246Arg	p.C246R	ENST00000353533	NM_003010.3	246	Tgt/Cgt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5210769	5210769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	157	1073	1	ENST00000357368.4:c.5282C>T	p.Thr1761Met	p.T1761M	ENST00000357368	NM_002850.3	1761	aCg/aTg																																																																														
AXL	558	MSKCC	GRCh37	19	41748899	41748899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750167315		P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	65	877	1	ENST00000301178.4:c.1424G>A	p.Arg475Gln	p.R475Q	ENST00000301178	NM_021913.4	475	cGa/cAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721038	61721038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	82	633	0	ENST00000401558.2:c.1236G>A	p.Met412Ile	p.M412I	ENST00000401558	NM_003400.3	412	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	206	1040	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	417	442	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	680	562	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589540	69589540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	57	105	0	ENST00000168712.1:c.313G>A	p.Gly105Ser	p.G105S	ENST00000168712	NM_002007.2	105	Ggc/Agc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78919556	78919556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	134	337	0	ENST00000306801.3:c.3115G>A	p.Ala1039Thr	p.A1039T	ENST00000306801	NM_020761.2	1039	Gcc/Acc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120468358	120468358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138567855		P-0033326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	255	591	1	ENST00000256646.2:c.4081G>A	p.Ala1361Thr	p.A1361T	ENST00000256646	NM_024408.3	1361	Gcc/Acc																																																																														
CBL	867	MSKCC	GRCh37	11	119103378	119103378	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	101	347	0	ENST00000264033.4:c.416G>T	p.Arg139Ile	p.R139I	ENST00000264033	NM_005188.3	139	aGa/aTa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5265144	5265144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	301	848	2	ENST00000357368.4:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000357368	NM_002850.3	148	cGg/cAg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190718761	190718761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	91	324	0	ENST00000441310.2:c.919G>C	p.Asp307His	p.D307H	ENST00000441310	NM_000534.4	307	Gat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974725	21974742	+	inframe_deletion	In_Frame_Del	DEL	CGCCTCCAGCAGCGCCCG	CGCCTCCAGCAGCGCCCG	-			P-0033326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	207	318	0	ENST00000304494.5:c.85_102delCGGGCGCTGCTGGAGGCG	p.Arg29_Ala34del	p.R29_A34del	ENST00000304494	NM_000077.4	29	CGGGCGCTGCTGGAGGCG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974725	21974742	+	inframe_deletion	In_Frame_Del	DEL	CGCCTCCAGCAGCGCCCG	CGCCTCCAGCAGCGCCCG	-			P-0033326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	207	318	0	ENST00000304494.5:c.85_102delCGGGCGCTGCTGGAGGCG	p.Arg29_Ala34del	p.R29_A34del	ENST00000304494	NM_000077.4	29	CGGGCGCTGCTGGAGGCG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974726	21974726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	20	316	0	ENST00000304494.5:c.101C>T	p.Ala34Val	p.A34V	ENST00000304494	NM_000077.4	34	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	554	755	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	290	284	0				ENST00000310581	NM_198253.2																																																																																
DNMT1	1786	MSKCC	GRCh37	19	10262117	10262119	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0033407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	475	761	1	ENST00000340748.4:c.2172_2174del	p.Lys725del	p.K725del	ENST00000340748		724	aaGAAa/aaa																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025941	1025941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	283	616	0	ENST00000358495.3:c.589G>A	p.Glu197Lys	p.E197K	ENST00000358495	NM_134424.2	197	Gaa/Aaa																																																																														
CYLD	1540	MSKCC	GRCh37	16	50788308	50788308	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	82	825	0	ENST00000398568.2:c.886C>G	p.Leu296Val	p.L296V	ENST00000398568	NM_001042412.1	296	Cta/Gta																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	122	585	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	158	614	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627249	86627249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	53	371	0	ENST00000274376.6:c.624G>C	p.Glu208Asp	p.E208D	ENST00000274376	NM_002890.2	208	gaG/gaC																																																																														
ID3	3399	MSKCC	GRCh37	1	23885511	23885512	+	splice_acceptor_variant	Splice_Site	INS	-	-	TGAT			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	98	383	0	ENST00000374561.5:c.301-5_301-2dup		p.X101_splice	ENST00000374561	NM_002167.4	101																																																																															
CSDE1	7812	MSKCC	GRCh37	1	115261356	115261357	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	92	330	0	ENST00000438362.2:c.2364dup	p.Lys789GlnfsTer9	p.K789Qfs*9	ENST00000438362	NM_001242891.1	788	-/C																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	77	290	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	101	436	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244913	46244913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	136	563	0	ENST00000334344.6:c.3007G>A	p.Val1003Ile	p.V1003I	ENST00000334344	NM_152641.2	1003	Gtc/Atc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58142976	58142976	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	165	684	0	ENST00000257904.6:c.808C>T	p.Gln270Ter	p.Q270*	ENST00000257904	NM_000075.3	270	Cag/Tag																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856094	111856094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	125	304	0	ENST00000341259.2:c.145G>A	p.Ala49Thr	p.A49T	ENST00000341259	NM_005475.2	49	Gcc/Acc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954273	32954273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	68	464	3	ENST00000380152.3:c.9253delA	p.Thr3085GlnfsTer19	p.T3085Qfs*19	ENST00000380152		3083	Aaa/aa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2135029	2135029	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	168	698	0	ENST00000219476.3:c.4569+2T>C		p.X1523_splice	ENST00000219476	NM_000548.3	1523																																																																															
TP53	7157	MSKCC	GRCh37	17	7579370	7579376	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCCT	CTGCCCT	-			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	311	665	0	ENST00000269305.4:c.311_317del	p.Gln104ProfsTer17	p.Q104Pfs*17	ENST00000269305	NM_001126112.2	104	cAGGGCAGc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229009	36229009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	209	805	2	ENST00000222270.7:c.7789G>A	p.Ala2597Thr	p.A2597T	ENST00000222270	NM_014727.1	2597	Gcg/Acg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967065	25967071	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCTC	CTGCCTC	-			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	170	578	0	ENST00000435504.4:c.2135_2141del	p.Gly712ValfsTer85	p.G712Vfs*85	ENST00000435504		712	gGAGGCAGt/gt																																																																														
ACVR1	90	MSKCC	GRCh37	2	158637068	158637069	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-	rs141073095		P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	126	567	5	ENST00000263640.3:c.111_112del	p.Cys37Ter	p.C37*	ENST00000263640	NM_001105.4	37	tgTGaa/tgaa																																																																														
EP300	2033	MSKCC	GRCh37	22	41572924	41572924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	91	651	1	ENST00000263253.7:c.5209C>T	p.Arg1737Cys	p.R1737C	ENST00000263253	NM_001429.3	1737	Cgc/Tgc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37056036	37056036	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	164	242	0	ENST00000231790.2:c.790+1G>A		p.X264_splice	ENST00000231790	NM_000249.3	264																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163377	47163377	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	62	344	0	ENST00000409792.3:c.2749del	p.Ser917ValfsTer5	p.S917Vfs*5	ENST00000409792	NM_014159.6	917	Agt/gt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	70	328	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174775	112174776	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	46	215	0	ENST00000257430.4:c.3485dup	p.Tyr1162Ter	p.Y1162*	ENST00000257430	NM_000038.5	1162	tat/tAat																																																																														
ROS1	6098	MSKCC	GRCh37	6	117704481	117704481	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	80	276	2	ENST00000368508.3:c.2495del	p.Lys832ArgfsTer2	p.K832Rfs*2	ENST00000368508	NM_002944.2	832	aAg/ag																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978602	70978602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	136	633	0	ENST00000276594.2:c.1051G>A	p.Glu351Lys	p.E351K	ENST00000276594	NM_024504.3	351	Gag/Aag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135776976	135776977	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	116	411	0	ENST00000298552.3:c.2501dup	p.Leu835AlafsTer5	p.L835Afs*5	ENST00000298552	NM_001162426.1	834	aag/aaAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409904	63409904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	105	201	0	ENST00000330258.3:c.3263C>T	p.Pro1088Leu	p.P1088L	ENST00000330258	NM_152424.3	1088	cCc/cTc																																																																														
AR	367	MSKCC	GRCh37	X	66765796	66765797	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	192	482	0	ENST00000374690.3:c.812dup	p.Leu272ThrfsTer33	p.L272Tfs*33	ENST00000374690	NM_000044.3	270	gcc/gCcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0035035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	107	552	1	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
ARAF	369	MSKCC	GRCh37	X	47426801	47426806	+	inframe_deletion	In_Frame_Del	DEL	AGGCTT	AGGCTT	-			P-0035035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	94	602	0	ENST00000377045.4:c.1046_1051delAGGCTT	p.Gln349_Phe351delinsLeu	p.Q349_F351delinsL	ENST00000377045	NM_001654.4	349	cAGGCTTtc/ctc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0035035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	124	812	1	ENST00000269305.4:c.266_267dupCC	p.Ser90ProfsTer34	p.S90Pfs*34	ENST00000269305	NM_001126112.2	89	-/CC																																																																														
AGO2	27161	MSKCC	GRCh37	8	141545625	141545625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	105	931	2	ENST00000220592.5:c.2213C>T	p.Thr738Met	p.T738M	ENST00000220592	NM_012154.3	738	aCg/aTg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073547	8073547	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	58	377	0	ENST00000377482.5:c.1112del	p.Gly371AspfsTer81	p.G371Dfs*81	ENST00000377482	NM_018948.3	371	gGa/ga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114799801	114799801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	102	372	0	ENST00000543371.1:c.468G>C	p.Trp156Cys	p.W156C	ENST00000543371	NM_001198531.1	156	tgG/tgC																																																																														
WT1	7490	MSKCC	GRCh37	11	32417946	32417946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	94	421	0	ENST00000332351.3:c.1106G>C	p.Arg369Pro	p.R369P	ENST00000332351	NM_024426.4	369	cGa/cCa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81557418	81557418	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	51	408	0	ENST00000298171.2:c.398T>G	p.Ile133Ser	p.I133S	ENST00000298171	NM_000369.2	133	aTt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	432	675	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245831	41245831	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	56	626	0	ENST00000357654.3:c.1717T>G	p.Ser573Ala	p.S573A	ENST00000357654	NM_007294.3	573	Tca/Gca																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5245795	5245795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	326	697	2	ENST00000357368.4:c.980C>T	p.Thr327Met	p.T327M	ENST00000357368	NM_002850.3	327	aCg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213312	36213327	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGACAGAGGCCCTG	TCCGACAGAGGCCCTG	-			P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	119	724	0	ENST00000222270.7:c.2513_2528del	p.Asp838GlyfsTer143	p.D838Gfs*143	ENST00000222270	NM_014727.1	837	TCCGACAGAGGCCCTGtc/tc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024326	31024327	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACCTCGTTCACTAGCCCGGCCTGGGAGCCTAACACTTTGCTTC			P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	91	570	0	ENST00000375687.4:c.3820_3821insCACTAGCCCGGCCTGGGAGCCTAACACTTTGCTTCCACCTCGTT	p.Phe1274SerfsTer21	p.F1274Sfs*21	ENST00000375687	NM_015338.5	1271	aca/aCACCTCGTTCACTAGCCCGGCCTGGGAGCCTAACACTTTGCTTCca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101070	41101070	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	161	600	0	ENST00000373198.4:c.1286T>A	p.Val429Glu	p.V429E	ENST00000373198	NM_133170.3	429	gTg/gAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	170	204	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39003684	39003684	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	32	297	0	ENST00000357387.3:c.236T>G	p.Phe79Cys	p.F79C	ENST00000357387	NM_152756.3	79	tTt/tGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249166	55249166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	96	538	1	ENST00000275493.2:c.2464G>A	p.Ala822Thr	p.A822T	ENST00000275493	NM_005228.3	822	Gca/Aca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499682	8499682	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	82	507	1	ENST00000356435.5:c.2287C>G	p.Pro763Ala	p.P763A	ENST00000356435		763	Ccc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	81	682	1	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602488	10602488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	66	628	0	ENST00000171111.5:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000171111	NM_203500.1	364	Ggc/Tgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467207	25467207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	39	399	0	ENST00000264709.3:c.1668G>T	p.Arg556Ser	p.R556S	ENST00000264709	NM_175629.2	556	agG/agT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537945	212537945	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	78	364	0	ENST00000342788.4:c.1660G>T	p.Glu554Ter	p.E554*	ENST00000342788	NM_005235.2	554	Gag/Tag																																																																														
RRAS	6237	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	50	582	1	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961321	54961321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2230743		P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	58	601	0	ENST00000312783.6:c.311C>T	p.Ser104Leu	p.S104L	ENST00000312783	NM_198436.1	104	tCg/tTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047245	180047245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	96	773	1	ENST00000261937.6:c.2470C>A	p.Leu824Met	p.L824M	ENST00000261937	NM_182925.4	824	Ctg/Atg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18473912	18473912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	30	453	0	ENST00000266497.5:c.1154G>T	p.Ser385Ile	p.S385I	ENST00000266497		385	aGt/aTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433349	49433349	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	45	634	0	ENST00000301067.7:c.8098C>G	p.Leu2700Val	p.L2700V	ENST00000301067	NM_003482.3	2700	Ctg/Gtg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26828902	26828908	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GATGGGT	GATGGGT	-			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	37	257	0	ENST00000381527.3:c.126_128+4del		p.X42_splice	ENST00000381527	NM_001260.1	42																																																																															
IRS2	8660	MSKCC	GRCh37	13	110436935	110436935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	39	344	0	ENST00000375856.3:c.1466C>T	p.Ser489Leu	p.S489L	ENST00000375856	NM_003749.2	489	tCg/tTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724866	43724866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	39	505	0	ENST00000382044.4:c.3201G>T	p.Leu1067Phe	p.L1067F	ENST00000382044	NM_001141980.1	1067	ttG/ttT																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476377	88476377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	62	584	0	ENST00000360948.2:c.1755C>A	p.Phe585Leu	p.F585L	ENST00000360948	NM_001012338.2	585	ttC/ttA																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12044488	12044488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	37	406	0	ENST00000353533.5:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000353533	NM_003010.3	371	Gaa/Aaa																																																																														
TCF3	6929	MSKCC	GRCh37	19	1615755	1615755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	91	739	0	ENST00000344749.5:c.1516G>A	p.Glu506Lys	p.E506K	ENST00000344749	NM_001136139.2	506	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214046	36214046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	74	823	1	ENST00000222270.7:c.2872G>T	p.Gly958Cys	p.G958C	ENST00000222270	NM_014727.1	958	Ggc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216516	36216516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	95	814	0	ENST00000222270.7:c.3779G>T	p.Arg1260Leu	p.R1260L	ENST00000222270	NM_014727.1	1260	cGt/cTt																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182666	38182666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	67	444	0	ENST00000396334.3:c.819G>A	p.Met273Ile	p.M273I	ENST00000396334	NM_002468.4	273	atG/atA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916803	178916803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	48	578	0	ENST00000263967.3:c.190G>C	p.Asp64His	p.D64H	ENST00000263967	NM_006218.2	64	Gat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922297	178922297	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	40	349	0	ENST00000263967.3:c.1066G>C	p.Val356Leu	p.V356L	ENST00000263967	NM_006218.2	356	Gtt/Ctt																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430672	181430672	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	159	664	0	ENST00000325404.1:c.524A>T	p.Gln175Leu	p.Q175L	ENST00000325404	NM_003106.3	175	cAg/cTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55970988	55970988	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	76	591	0	ENST00000263923.4:c.1809C>A	p.Cys603Ter	p.C603*	ENST00000263923	NM_002253.2	603	tgC/tgA																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143094828	143094828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	39	472	0	ENST00000262992.4:c.1316C>G	p.Ser439Cys	p.S439C	ENST00000262992	NM_001101669.1	439	tCt/tGt																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64288384	64288384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	15	346	0	ENST00000370651.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000370651	NM_003463.4	50	Gaa/Aaa																																																																														
PARK2	5071	MSKCC	GRCh37	6	162622183	162622184	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	53	422	0	ENST00000366898.1:c.513_514delinsAT	p.Ala172Ser	p.A172S	ENST00000366898	NM_004562.2	171	caGGca/caATca																																																																														
HGF	3082	MSKCC	GRCh37	7	81388121	81388121	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	25	334	0	ENST00000222390.5:c.255-1G>T		p.X85_splice	ENST00000222390	NM_000601.4	85																																																																															
LYN	4067	MSKCC	GRCh37	8	56864534	56864534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	119	567	0	ENST00000519728.1:c.497C>G	p.Ser166Cys	p.S166C	ENST00000519728	NM_002350.3	166	tCt/tGt																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128434627	128434627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	50	597	0	ENST00000265960.3:c.227G>T	p.Trp76Leu	p.W76L	ENST00000265960	NM_001006617.1	76	tGg/tTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410642	63410642	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	63	411	0	ENST00000330258.3:c.2525A>T	p.Glu842Val	p.E842V	ENST00000330258	NM_152424.3	842	gAg/gTg																																																																														
MED12	9968	MSKCC	GRCh37	X	70345304	70345304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	76	315	0	ENST00000374080.3:c.2330A>G	p.Asp777Gly	p.D777G	ENST00000374080		777	gAt/gGt																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324674	31324674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11546719		P-0035506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	10	220	2	ENST00000412585.2:c.134G>A	p.Arg45His	p.R45H	ENST00000412585	NM_005514.6	45	cGc/cAc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851512	63851512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	23	516	0	ENST00000279873.7:c.2290G>A	p.Glu764Lys	p.E764K	ENST00000279873	NM_032199.2	764	Gaa/Aaa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572516	64572516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	143	568	1	ENST00000337652.1:c.1355T>C	p.Phe452Ser	p.F452S	ENST00000337652	NM_130803.2	452	tTt/tCt																																																																														
ATM	472	MSKCC	GRCh37	11	108218021	108218021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	153	325	0	ENST00000278616.4:c.8600G>A	p.Gly2867Glu	p.G2867E	ENST00000278616	NM_000051.3	2867	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	59	485	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034475	47034475	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	109	675	0	ENST00000329236.7:c.329G>A	p.Trp110Ter	p.W110*	ENST00000329236	NM_001204466.1	110	tGg/tAg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509915	106509915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	76	649	0	ENST00000359195.3:c.1909G>T	p.Asp637Tyr	p.D637Y	ENST00000359195	NM_002649.2	637	Gat/Tat																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363090	40363090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	62	574	1	ENST00000397332.2:c.1139G>T	p.Arg380Leu	p.R380L	ENST00000397332	NM_001033082.2	380	cGg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743859	40743859	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	63	506	0	ENST00000373198.4:c.3136del	p.Arg1046AlafsTer54	p.R1046Afs*54	ENST00000373198	NM_133170.3	1046	Cgc/gc																																																																														
BCL2	596	MSKCC	GRCh37	18	60985571	60985571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	89	352	0	ENST00000333681.4:c.329G>A	p.Arg110His	p.R110H	ENST00000333681		110	cGc/cAc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227784	53227784	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	168	702	0	ENST00000375401.3:c.2404del	p.Arg802ValfsTer14	p.R802Vfs*14	ENST00000375401	NM_004187.3	802	Cgt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023501	27023501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			827	81	529	0	ENST00000324856.7:c.607C>T	p.His203Tyr	p.H203Y	ENST00000324856	NM_006015.4	203	Cac/Tac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913878	32913878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	75	485	0	ENST00000380152.3:c.5386G>C	p.Asp1796His	p.D1796H	ENST00000380152		1796	Gat/Cat																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841123	15841124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	114	481	0	ENST00000307771.7:c.1212dupG	p.Lys405GlufsTer23	p.K405Efs*23	ENST00000307771	NM_005089.3	403	agg/aGgg																																																																														
IGF1	3479	MSKCC	GRCh37	12	102869496	102869496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	104	413	0	ENST00000307046.8:c.145G>A	p.Gly49Arg	p.G49R	ENST00000307046	NM_001111285.1	49	Gga/Aga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508977	106508977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025100-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			878	59	424	0	ENST00000359195.3:c.971C>T	p.Pro324Leu	p.P324L	ENST00000359195	NM_002649.2	324	cCa/cTa																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727441	66727441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	108	285	1	ENST00000307102.5:c.157T>C	p.Phe53Leu	p.F53L	ENST00000307102	NM_002755.3	53	Ttt/Ctt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145662	11145662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	218	479	0	ENST00000344626.4:c.4024G>A	p.Glu1342Lys	p.E1342K	ENST00000344626	NM_003072.3	1342	Gag/Aag																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843699	156843699	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	334	653	0	ENST00000524377.1:c.1125G>C	p.Met375Ile	p.M375I	ENST00000524377	NM_002529.3	375	atG/atC																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488220	56488220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	176	383	1	ENST00000267101.3:c.1739G>T	p.Arg580Leu	p.R580L	ENST00000267101	NM_001982.3	580	cGa/cTa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2106676	2106676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	270	594	0	ENST00000219476.3:c.680G>A	p.Cys227Tyr	p.C227Y	ENST00000219476	NM_000548.3	227	tGc/tAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600448	10600448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	102	542	0	ENST00000171111.5:c.1407T>A	p.Asn469Lys	p.N469K	ENST00000171111	NM_203500.1	469	aaT/aaA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133803	55133804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	141	310	0	ENST00000257290.5:c.1017dup	p.Arg340AlafsTer19	p.R340Afs*19	ENST00000257290	NM_006206.4	339	gtg/gtGg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444424	50444424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	141	274	0	ENST00000331340.3:c.354G>C	p.Lys118Asn	p.K118N	ENST00000331340	NM_006060.4	118	aaG/aaC																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737166	145737166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1474	217	464	0	ENST00000428558.2:c.3400G>A	p.Asp1134Asn	p.D1134N	ENST00000428558	NM_004260.3	1134	Gat/Aat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410145	63410145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	228	550	0	ENST00000330258.3:c.3022C>A	p.Pro1008Thr	p.P1008T	ENST00000330258	NM_152424.3	1008	Cca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0035140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	118	567	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
STK11	6794	MSKCC	GRCh37	19	1221315	1221316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	45	565	1	ENST00000326873.7:c.838_839insT	p.Pro280LeufsTer5	p.P280Lfs*5	ENST00000326873	NM_000455.4	280	ccc/cTcc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039440	47039440	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0035140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	50	259	0	ENST00000329236.7:c.828+4G>T		p.X276_splice	ENST00000329236	NM_001204466.1	276																																																																															
APC	324	MSKCC	GRCh37	5	112179431	112179431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	46	587	1	ENST00000257430.4:c.8140C>T	p.Arg2714Cys	p.R2714C	ENST00000257430	NM_000038.5	2714	Cgt/Tgt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	58	565	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	49	558	0	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	23	290	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	48	591	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	43	762	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	66	571	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
RB1	5925	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	25	366	0	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	27	357	0	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	55	759	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2491273	2491273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	59	637	0	ENST00000355716.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000355716	NM_003820.2	106	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	25	500	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	67	586	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																														
NF1	4763	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	35	415	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546620	9546620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	60	712	0	ENST00000353224.5:c.1402G>A	p.Glu468Lys	p.E468K	ENST00000353224	NM_177990.2	468	Gag/Aag																																																																														
RAF1	5894	MSKCC	GRCh37	3	12647784	12647784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	27	354	0	ENST00000251849.4:c.596C>T	p.Ser199Phe	p.S199F	ENST00000251849	NM_002880.3	199	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	34	444	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793712	89793712	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	43	453	0	ENST00000336032.3:c.781A>C	p.Asn261His	p.N261H	ENST00000336032	NM_006813.2	261	Aat/Cat																																																																														
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	48	550	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142178199	142178199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	34	394	0	ENST00000350721.4:c.7219C>T	p.Arg2407Cys	p.R2407C	ENST00000350721	NM_001184.3	2407	Cgc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	48881438	48881438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	17	342	0	ENST00000267163.4:c.160G>A	p.Glu54Lys	p.E54K	ENST00000267163	NM_000321.2	54	Gaa/Aaa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29107974	29107974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	37	668	0	ENST00000328354.6:c.715G>A	p.Glu239Lys	p.E239K	ENST00000328354	NM_007194.3	239	Gag/Aag																																																																														
EZH2	2146	MSKCC	GRCh37	7	148504761	148504761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	36	523	0	ENST00000320356.2:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000320356	NM_004456.4	745	Gaa/Aaa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87322770	87322770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	41	609	0	ENST00000277120.3:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000277120		124	cGa/cAa																																																																														
INHA	3623	MSKCC	GRCh37	2	220437275	220437275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	31	836	0	ENST00000243786.2:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000243786	NM_002191.3	60	cGa/cAa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005419	29005419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55687105		P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	36	489	0	ENST00000282397.4:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000282397	NM_002019.4	281	cGa/cAa																																																																														
FANCC	2176	MSKCC	GRCh37	9	97897654	97897654	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143181565		P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	45	504	0	ENST00000289081.3:c.817G>A	p.Glu273Lys	p.E273K	ENST00000289081	NM_000136.2	273	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	19	240	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108098519	108098519	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	16	432	0	ENST00000278616.4:c.89T>G	p.Phe30Cys	p.F30C	ENST00000278616	NM_000051.3	30	tTt/tGt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029072	14029072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	37	311	0	ENST00000311895.7:c.1283C>T	p.Ala428Val	p.A428V	ENST00000311895	NM_005236.2	428	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105736	27105736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	36	409	0	ENST00000324856.7:c.5347G>T	p.Glu1783Ter	p.E1783*	ENST00000324856	NM_006015.4	1783	Gaa/Taa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138453531	138453531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	40	543	0	ENST00000289153.2:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000289153	NM_006219.2	306	cGa/cAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830958	72830958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	63	584	0	ENST00000268489.5:c.5623G>A	p.Glu1875Lys	p.E1875K	ENST00000268489	NM_006885.3	1875	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41278079	41278079	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	48	463	0	ENST00000349496.5:c.1955C>T	p.Ala652Val	p.A652V	ENST00000349496	NM_001904.3	652	gCg/gTg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99163066	99163066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	44	501	1	ENST00000074304.5:c.1072G>A	p.Val358Ile	p.V358I	ENST00000074304	NM_001134224.1	358	Gtc/Atc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94923091	94923091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	51	582	0	ENST00000536441.1:c.377A>G	p.Asn126Ser	p.N126S	ENST00000536441	NM_144665.3	126	aAc/aGc																																																																														
TOP1	7150	MSKCC	GRCh37	20	39708808	39708808	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183058581		P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	15	384	0	ENST00000361337.2:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000361337	NM_003286.2	140	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165078	47165078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	42	478	0	ENST00000409792.3:c.1048G>T	p.Asp350Tyr	p.D350Y	ENST00000409792	NM_014159.6	350	Gat/Tat																																																																														
BTK	695	MSKCC	GRCh37	X	100611203	100611203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	73	554	0	ENST00000308731.7:c.1403G>A	p.Arg468His	p.R468H	ENST00000308731	NM_000061.2	468	cGc/cAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521857	157521857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	45	445	0	ENST00000346085.5:c.4129G>T	p.Asp1377Tyr	p.D1377Y	ENST00000346085	NM_020732.3	1377	Gac/Tac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609759	117609759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	66	662	0	ENST00000368508.3:c.6940G>T	p.Asp2314Tyr	p.D2314Y	ENST00000368508	NM_002944.2	2314	Gat/Tat																																																																														
TSC2	7249	MSKCC	GRCh37	16	2098638	2098638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	28	525	0	ENST00000219476.3:c.22G>T	p.Asp8Tyr	p.D8Y	ENST00000219476	NM_000548.3	8	Gat/Tat																																																																														
TERT	7015	MSKCC	GRCh37	5	1255446	1255446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	45	682	0	ENST00000310581.5:c.3113A>G	p.Asp1038Gly	p.D1038G	ENST00000310581	NM_198253.2	1038	gAc/gGc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5090886	5090886	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	13	194	0	ENST00000381652.3:c.3034G>T	p.Glu1012Ter	p.E1012*	ENST00000381652	NM_004972.3	1012	Gaa/Taa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14020559	14020559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	42	659	0	ENST00000311895.7:c.530A>G	p.His177Arg	p.H177R	ENST00000311895	NM_005236.2	177	cAt/cGt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180254	32180254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	35	581	0	ENST00000375023.3:c.2677C>A	p.Gln893Lys	p.Q893K	ENST00000375023	NM_004557.3	893	Caa/Aaa																																																																														
TET2	54790	MSKCC	GRCh37	4	106164817	106164817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	47	564	0	ENST00000380013.4:c.3685C>A	p.Leu1229Ile	p.L1229I	ENST00000380013	NM_001127208.2	1229	Ctc/Atc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56152510	56152510	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	28	285	0	ENST00000399503.3:c.566T>G	p.Leu189Arg	p.L189R	ENST00000399503	NM_005921.1	189	cTg/cGg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914274	32914274	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	40	565	0	ENST00000380152.3:c.5782G>T	p.Glu1928Ter	p.E1928*	ENST00000380152		1928	Gaa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163610	47163610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	45	530	0	ENST00000409792.3:c.2516G>T	p.Arg839Ile	p.R839I	ENST00000409792	NM_014159.6	839	aGa/aTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416445	49416445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	72	696	0	ENST00000301067.7:c.16266G>A	p.Met5422Ile	p.M5422I	ENST00000301067	NM_003482.3	5422	atG/atA																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073433	8073433	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	45	602	0	ENST00000377482.5:c.1226A>C	p.Lys409Thr	p.K409T	ENST00000377482	NM_018948.3	409	aAa/aCa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9780857	9780857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	47	754	1	ENST00000377346.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000377346	NM_005026.3	527	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256661	16256661	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	41	526	0	ENST00000375759.3:c.3926T>G	p.Phe1309Cys	p.F1309C	ENST00000375759	NM_015001.2	1309	tTt/tGt																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39317412	39317412	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	63	653	0	ENST00000373001.3:c.774A>C	p.Lys258Asn	p.K258N	ENST00000373001	NM_022157.3	258	aaA/aaC																																																																														
MPL	4352	MSKCC	GRCh37	1	43812149	43812149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	50	390	0	ENST00000372470.3:c.1014G>T	p.Glu338Asp	p.E338D	ENST00000372470	NM_005373.2	338	gaG/gaT																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45798775	45798775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	52	763	0	ENST00000372115.3:c.414G>T	p.Trp138Cys	p.W138C	ENST00000372115	NM_001048171.1	138	tgG/tgT																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45805924	45805924	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	45	492	0	ENST00000372115.3:c.3G>T	p.Met1?	p.M1?	ENST00000372115	NM_001048171.1	1	atG/atT																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076802	72076802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	38	438	0	ENST00000357731.5:c.695C>A	p.Ser232Tyr	p.S232Y	ENST00000357731	NM_173808.2	232	tCt/tAt																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165692	118165692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	43	430	0	ENST00000369448.3:c.202G>A	p.Asp68Asn	p.D68N	ENST00000369448	NM_017709.3	68	Gac/Aac																																																																														
DDR2	4921	MSKCC	GRCh37	1	162737061	162737061	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	47	606	0	ENST00000367921.3:c.1205T>G	p.Ile402Ser	p.I402S	ENST00000367921	NM_006182.2	402	aTt/aGt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162743286	162743286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	26	315	0	ENST00000367921.3:c.1756G>A	p.Glu586Lys	p.E586K	ENST00000367921	NM_006182.2	586	Gaa/Aaa																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175956176	175956176	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	37	528	0	ENST00000367669.3:c.2036A>C	p.Lys679Thr	p.K679T	ENST00000367669	NM_022457.5	679	aAg/aCg																																																																														
RET	5979	MSKCC	GRCh37	10	43623695	43623695	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	54	559	0	ENST00000355710.3:c.3323T>G	p.Leu1108Ter	p.L1108*	ENST00000355710	NM_020975.4	1108	tTa/tGa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653782	89653782	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	21	439	0	ENST00000371953.3:c.80A>C	p.Tyr27Ser	p.Y27S	ENST00000371953	NM_000314.4	27	tAt/tCt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690833	89690833	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	32	475	0	ENST00000371953.3:c.240A>C	p.Lys80Asn	p.K80N	ENST00000371953	NM_000314.4	80	aaA/aaC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692947	89692947	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	59	659	0	ENST00000371953.3:c.431A>C	p.Lys144Thr	p.K144T	ENST00000371953	NM_000314.4	144	aAa/aCa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114911514	114911514	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	20	308	0	ENST00000543371.1:c.1032A>C	p.Glu344Asp	p.E344D	ENST00000543371	NM_001198531.1	344	gaA/gaC																																																																														
PGR	5241	MSKCC	GRCh37	11	100920777	100920777	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	39	512	0	ENST00000325455.5:c.2371G>T	p.Glu791Ter	p.E791*	ENST00000325455	NM_001202474.3	791	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108115575	108115575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	43	611	0	ENST00000278616.4:c.723G>T	p.Lys241Asn	p.K241N	ENST00000278616	NM_000051.3	241	aaG/aaT																																																																														
ATM	472	MSKCC	GRCh37	11	108138012	108138012	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	29	499	0	ENST00000278616.4:c.2581T>G	p.Tyr861Asp	p.Y861D	ENST00000278616	NM_000051.3	861	Tac/Gac																																																																														
ATM	472	MSKCC	GRCh37	11	108164158	108164158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	26	364	0	ENST00000278616.4:c.4730C>A	p.Thr1577Asn	p.T1577N	ENST00000278616	NM_000051.3	1577	aCt/aAt																																																																														
ATM	472	MSKCC	GRCh37	11	108165730	108165730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	43	450	0	ENST00000278616.4:c.4853G>A	p.Arg1618Gln	p.R1618Q	ENST00000278616	NM_000051.3	1618	cGa/cAa																																																																														
RAD52	5893	MSKCC	GRCh37	12	1034629	1034629	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	59	662	0	ENST00000358495.3:c.530A>C	p.Lys177Thr	p.K177T	ENST00000358495	NM_134424.2	177	aAg/aCg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245252	46245252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	27	510	0	ENST00000334344.6:c.3346C>T	p.Pro1116Ser	p.P1116S	ENST00000334344	NM_152641.2	1116	Cca/Tca																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495832	56495832	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	40	363	0	ENST00000267101.3:c.4022G>T	p.Arg1341Ile	p.R1341I	ENST00000267101	NM_001982.3	1341	aGa/aTa																																																																														
POLE	5426	MSKCC	GRCh37	12	133256218	133256218	+	stop_gained	Nonsense_Mutation	SNP	A	A	T	rs12315832		P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	56	641	0	ENST00000320574.5:c.443T>A	p.Leu148Ter	p.L148*	ENST00000320574	NM_006231.2	148	tTg/tAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906993	32906993	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	26	547	0	ENST00000380152.3:c.1378A>C	p.Asn460His	p.N460H	ENST00000380152		460	Aat/Cat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911360	32911360	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	34	532	0	ENST00000380152.3:c.2868A>C	p.Lys956Asn	p.K956N	ENST00000380152		956	aaA/aaC																																																																														
BRCA2	675	MSKCC	GRCh37	13	32972633	32972633	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	21	499	0	ENST00000380152.3:c.9983T>G	p.Phe3328Cys	p.F3328C	ENST00000380152		3328	tTc/tGc																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35872009	35872009	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	43	457	0	ENST00000216797.5:c.604T>G	p.Leu202Val	p.L202V	ENST00000216797	NM_020529.2	202	Ttg/Gtg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422098	81422098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	55	510	0	ENST00000298171.2:c.74C>T	p.Ser25Leu	p.S25L	ENST00000298171	NM_000369.2	25	tCg/tTg																																																																														
BLM	641	MSKCC	GRCh37	15	91337519	91337519	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	50	572	0	ENST00000355112.3:c.3142A>C	p.Asn1048His	p.N1048H	ENST00000355112	NM_000057.2	1048	Aat/Cat																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3799671	3799671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	45	507	0	ENST00000262367.5:c.3793G>A	p.Asp1265Asn	p.D1265N	ENST00000262367	NM_004380.2	1265	Gat/Aat																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858594	9858594	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	52	646	0	ENST00000330684.3:c.2807C>A	p.Ser936Ter	p.S936*	ENST00000330684	NM_001134407.1	936	tCa/tAa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029402	14029402	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	53	464	1	ENST00000311895.7:c.1613T>A	p.Leu538Ter	p.L538*	ENST00000311895	NM_005236.2	538	tTg/tAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993029	72993029	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	87	857	0	ENST00000268489.5:c.1016T>A	p.Phe339Tyr	p.F339Y	ENST00000268489	NM_006885.3	339	tTt/tAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29554580	29554580	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	14	291	0	ENST00000358273.4:c.2365A>C	p.Lys789Gln	p.K789Q	ENST00000358273	NM_001042492.2	789	Aag/Cag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59770859	59770859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	34	418	0	ENST00000259008.2:c.2507G>A	p.Arg836Lys	p.R836K	ENST00000259008	NM_032043.2	836	aGa/aAa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375463	15375463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	89	727	2	ENST00000263377.2:c.964C>T	p.Arg322Trp	p.R322W	ENST00000263377	NM_058243.2	322	Cgg/Tgg																																																																														
AXL	558	MSKCC	GRCh37	19	41736878	41736878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	47	635	0	ENST00000301178.4:c.593A>G	p.Asn198Ser	p.N198S	ENST00000301178	NM_021913.4	198	aAc/aGc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026615	48026615	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	42	502	0	ENST00000234420.5:c.1493A>C	p.Lys498Thr	p.K498T	ENST00000234420	NM_000179.2	498	aAg/aCg																																																																														
REL	5966	MSKCC	GRCh37	2	61149170	61149170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	31	446	0	ENST00000295025.8:c.1360G>T	p.Asp454Tyr	p.D454Y	ENST00000295025	NM_002908.2	454	Gat/Tat																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128030455	128030455	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	62	606	0	ENST00000285398.2:c.1813A>C	p.Ile605Leu	p.I605L	ENST00000285398	NM_000122.1	605	Atc/Ctc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251716	212251716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	32	458	1	ENST00000342788.4:c.3343G>T	p.Val1115Leu	p.V1115L	ENST00000342788	NM_005235.2	1115	Gtg/Ttg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212285282	212285282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	33	513	0	ENST00000342788.4:c.3019C>T	p.Leu1007Phe	p.L1007F	ENST00000342788	NM_005235.2	1007	Ctc/Ttc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286796	212286796	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	22	503	0	ENST00000342788.4:c.2900T>G	p.Phe967Cys	p.F967C	ENST00000342788	NM_005235.2	967	tTt/tGt																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624881	9624881	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	45	627	0	ENST00000353224.5:c.96T>G	p.Phe32Leu	p.F32L	ENST00000353224	NM_177990.2	32	ttT/ttG																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309577	30309577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	63	636	0	ENST00000307677.4:c.445G>T	p.Ala149Ser	p.A149S	ENST00000307677	NM_138578.1	149	Gca/Tca																																																																														
TOP1	7150	MSKCC	GRCh37	20	39742794	39742794	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	51	386	0	ENST00000361337.2:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000361337	NM_003286.2	546	cGa/cAa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748586	40748586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	37	410	0	ENST00000373198.4:c.2930T>G	p.Ile977Ser	p.I977S	ENST00000373198	NM_133170.3	977	aTt/aGt																																																																														
EP300	2033	MSKCC	GRCh37	22	41553286	41553286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	64	655	0	ENST00000263253.7:c.3375C>A	p.Phe1125Leu	p.F1125L	ENST00000263253	NM_001429.3	1125	ttC/ttA																																																																														
RAF1	5894	MSKCC	GRCh37	3	12653459	12653459	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	38	500	0	ENST00000251849.4:c.310G>T	p.Glu104Ter	p.E104*	ENST00000251849	NM_002880.3	104	Gaa/Taa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643911	52643911	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	50	629	0	ENST00000394830.3:c.1985T>G	p.Leu662Arg	p.L662R	ENST00000394830	NM_018313.4	662	cTa/cGa																																																																														
ATR	545	MSKCC	GRCh37	3	142278209	142278209	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	45	660	0	ENST00000350721.4:c.1616T>G	p.Phe539Cys	p.F539C	ENST00000350721	NM_001184.3	539	tTt/tGt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156490	55156490	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	27	445	0	ENST00000257290.5:c.2891A>C	p.Lys964Thr	p.K964T	ENST00000257290	NM_006206.4	964	aAa/aCa																																																																														
TET2	54790	MSKCC	GRCh37	4	106158262	106158262	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	48	402	0	ENST00000380013.4:c.3163A>C	p.Lys1055Gln	p.K1055Q	ENST00000380013	NM_001127208.2	1055	Aaa/Caa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524715	187524715	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	85	801	0	ENST00000441802.2:c.10965C>A	p.Phe3655Leu	p.F3655L	ENST00000441802	NM_005245.3	3655	ttC/ttA																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56160633	56160633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76076026		P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	49	364	0	ENST00000399503.3:c.907G>A	p.Glu303Lys	p.E303K	ENST00000399503	NM_005921.1	303	Gaa/Aaa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177491	56177491	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	44	550	0	ENST00000399503.3:c.2464A>C	p.Ser822Arg	p.S822R	ENST00000399503	NM_005921.1	822	Agt/Cgt																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751234	57751234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	27	440	0	ENST00000274289.3:c.1633C>A	p.His545Asn	p.H545N	ENST00000274289	NM_006622.3	545	Cac/Aac																																																																														
MSH3	4437	MSKCC	GRCh37	5	80071530	80071530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	53	459	0	ENST00000265081.6:c.2271G>T	p.Lys757Asn	p.K757N	ENST00000265081	NM_002439.4	757	aaG/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112174365	112174365	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	23	314	0	ENST00000257430.4:c.3074T>G	p.Ile1025Arg	p.I1025R	ENST00000257430	NM_000038.5	1025	aTa/aGa																																																																														
APC	324	MSKCC	GRCh37	5	112176881	112176881	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	33	486	0	ENST00000257430.4:c.5590T>G	p.Ser1864Ala	p.S1864A	ENST00000257430	NM_000038.5	1864	Tct/Gct																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722414	176722414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	28	416	0	ENST00000439151.2:c.8045A>G	p.Asn2682Ser	p.N2682S	ENST00000439151	NM_022455.4	2682	aAc/aGc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672744	30672744	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	66	796	0	ENST00000376406.3:c.4216A>G	p.Thr1406Ala	p.T1406A	ENST00000376406	NM_014641.2	1406	Aca/Gca																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32184750	32184750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	28	600	0	ENST00000375023.3:c.1833C>A	p.Phe611Leu	p.F611L	ENST00000375023	NM_004557.3	611	ttC/ttA																																																																														
SESN1	27244	MSKCC	GRCh37	6	109322568	109322568	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	64	721	0	ENST00000436639.2:c.469T>G	p.Phe157Val	p.F157V	ENST00000436639	NM_014454.2	157	Ttc/Gtc																																																																														
FYN	2534	MSKCC	GRCh37	6	112025283	112025283	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	51	539	2	ENST00000368678.4:c.466C>T	p.Arg156Ter	p.R156*	ENST00000368678		156	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631430	117631430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	43	393	0	ENST00000368508.3:c.6248G>T	p.Arg2083Ile	p.R2083I	ENST00000368508	NM_002944.2	2083	aGa/aTa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662568	117662568	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	33	495	1	ENST00000368508.3:c.4897T>A	p.Leu1633Ile	p.L1633I	ENST00000368508	NM_002944.2	1633	Tta/Ata																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026525	6026525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	88	792	1	ENST00000265849.7:c.1871C>A	p.Ser624Tyr	p.S624Y	ENST00000265849	NM_000535.5	624	tCt/tAt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520104	106520104	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	21	305	0	ENST00000359195.3:c.2532T>G	p.Ile844Met	p.I844M	ENST00000359195	NM_002649.2	844	atT/atG																																																																														
MET	4233	MSKCC	GRCh37	7	116412192	116412192	+	intron_variant	Intron	SNP	T	T	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	80	774	0	ENST00000397752.3:c.3028+149T>C		p.*1010*	ENST00000397752	NM_000245.2	1010																																																																															
SMO	6608	MSKCC	GRCh37	7	128850267	128850267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	34	803	0	ENST00000249373.3:c.1530G>T	p.Lys510Asn	p.K510N	ENST00000249373	NM_005631.4	510	aaG/aaT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151891323	151891323	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	44	481	0	ENST00000262189.6:c.4531A>C	p.Lys1511Gln	p.K1511Q	ENST00000262189	NM_170606.2	1511	Aaa/Caa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68942834	68942834	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	76	605	1	ENST00000288368.4:c.646A>G	p.Arg216Gly	p.R216G	ENST00000288368	NM_024870.2	216	Aga/Gga																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978485	70978485	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs112783392		P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	40	445	0	ENST00000276594.2:c.1168T>C	p.Ser390Pro	p.S390P	ENST00000276594	NM_024504.3	390	Tct/Cct																																																																														
RAD21	5885	MSKCC	GRCh37	8	117862899	117862899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	41	633	0	ENST00000297338.2:c.1578G>T	p.Glu526Asp	p.E526D	ENST00000297338	NM_006265.2	526	gaG/gaT																																																																														
AGO2	27161	MSKCC	GRCh37	8	141582991	141582991	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	77	672	0	ENST00000220592.5:c.256A>C	p.Ile86Leu	p.I86L	ENST00000220592	NM_012154.3	86	Atc/Ctc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5064889	5064889	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	26	398	0	ENST00000381652.3:c.1063G>T	p.Glu355Ter	p.E355*	ENST00000381652	NM_004972.3	355	Gaa/Taa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080593	5080593	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	38	550	0	ENST00000381652.3:c.2344A>C	p.Asn782His	p.N782H	ENST00000381652	NM_004972.3	782	Aac/Cac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319913	8319913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	42	446	1	ENST00000356435.5:c.5588G>T	p.Arg1863Ile	p.R1863I	ENST00000356435		1863	aGa/aTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465575	8465575	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	54	709	0	ENST00000356435.5:c.3605A>C	p.Glu1202Ala	p.E1202A	ENST00000356435		1202	gAg/gCg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471012	8471012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	27	527	0	ENST00000356435.5:c.3487G>T	p.Glu1163Ter	p.E1163*	ENST00000356435		1163	Gaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484366	8484366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	29	464	1	ENST00000356435.5:c.3166G>T	p.Asp1056Tyr	p.D1056Y	ENST00000356435		1056	Gat/Tat																																																																														
TEK	7010	MSKCC	GRCh37	9	27202956	27202956	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	69	615	0	ENST00000380036.4:c.2048A>C	p.Gln683Pro	p.Q683P	ENST00000380036	NM_000459.3	683	cAg/cCg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229599	98229599	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	47	508	0	ENST00000331920.6:c.2359G>T	p.Glu787Ter	p.E787*	ENST00000331920	NM_000264.3	787	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76849193	76849193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	28	466	1	ENST00000373344.5:c.6083G>A	p.Arg2028Gln	p.R2028Q	ENST00000373344	NM_000489.3	2028	cGa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76855047	76855047	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	35	476	0	ENST00000373344.5:c.5789A>C	p.Lys1930Thr	p.K1930T	ENST00000373344	NM_000489.3	1930	aAg/aCg																																																																														
ATRX	546	MSKCC	GRCh37	X	76872174	76872174	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	49	554	0	ENST00000373344.5:c.5473A>C	p.Lys1825Gln	p.K1825Q	ENST00000373344	NM_000489.3	1825	Aaa/Caa																																																																														
BTK	695	MSKCC	GRCh37	X	100611778	100611778	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	60	573	0	ENST00000308731.7:c.1343T>C	p.Val448Ala	p.V448A	ENST00000308731	NM_000061.2	448	gTc/gCc																																																																														
BTK	695	MSKCC	GRCh37	X	100626652	100626652	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	40	542	1	ENST00000308731.7:c.278C>A	p.Ser93Ter	p.S93*	ENST00000308731	NM_000061.2	93	tCa/tAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123182891	123182891	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	39	450	0	ENST00000218089.9:c.856A>C	p.Asn286His	p.N286H	ENST00000218089	NM_001042749.1	286	Aat/Cat																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185164	123185164	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	41	552	0	ENST00000218089.9:c.1117-1G>T		p.X373_splice	ENST00000218089	NM_001042749.1	373																																																																															
STAG2	10735	MSKCC	GRCh37	X	123197029	123197029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	32	632	0	ENST00000218089.9:c.1795A>G	p.Ile599Val	p.I599V	ENST00000218089	NM_001042749.1	599	Ata/Gta																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205096	123205096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	43	736	0	ENST00000218089.9:c.2456C>A	p.Ser819Tyr	p.S819Y	ENST00000218089	NM_001042749.1	819	tCt/tAt																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152861584	152861584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	62	712	1	ENST00000406277.2:c.168C>A	p.Phe56Leu	p.F56L	ENST00000406277	NM_152274.4	56	ttC/ttA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	211	464	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578419	7578420	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AG			P-0035156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	31	685	1	ENST00000269305.4:c.510_511delinsCT	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	170	acGGag/acCTag																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513346	44513346	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	42	442	0	ENST00000291552.4:c.589T>G	p.Ser197Ala	p.S197A	ENST00000291552	NM_006758.2	197	Tcc/Gcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	63	433	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034492	47034492	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0035488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	178	529	1	ENST00000329236.7:c.345+1G>A		p.X115_splice	ENST00000329236	NM_001204466.1	115																																																																															
CD276	80381	MSKCC	GRCh37	15	74000805	74000805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	109	456	0	ENST00000318443.5:c.1495G>A	p.Glu499Lys	p.E499K	ENST00000318443	NM_001024736.1	499	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	88	482	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579368	7579368	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	304	641	0	ENST00000269305.4:c.319del	p.Tyr107ThrfsTer16	p.Y107Tfs*16	ENST00000269305	NM_001126112.2	107	Tac/ac																																																																														
PMS2	5395	MSKCC	GRCh37	7	6042149	6042149	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	60	439	0	ENST00000265849.7:c.472A>T	p.Ser158Cys	p.S158C	ENST00000265849	NM_000535.5	158	Agc/Tgc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849801	156849801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	99	436	0	ENST00000524377.1:c.2057G>T	p.Arg686Leu	p.R686L	ENST00000524377	NM_002529.3	686	cGc/cTc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10599910	10599910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	220	627	0	ENST00000171111.5:c.1666G>T	p.Ala556Ser	p.A556S	ENST00000171111	NM_203500.1	556	Gcc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	182	417	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29592251	29592251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	20	160	0	ENST00000358273.4:c.4729C>T	p.Gln1577Ter	p.Q1577*	ENST00000358273	NM_001042492.2	1577	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578197	7578197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	117	605	1	ENST00000269305.4:c.652G>A	p.Val218Met	p.V218M	ENST00000269305	NM_001126112.2	218	Gtg/Atg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163733	72163733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	112	553	0	ENST00000357731.5:c.625G>A	p.Val209Met	p.V209M	ENST00000357731	NM_173808.2	209	Gtg/Atg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64573730	64573730	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	151	505	0	ENST00000337652.1:c.1038G>A	p.Trp346Ter	p.W346*	ENST00000337652	NM_130803.2	346	tgG/tgA																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38591749	38591749	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	73	314	0	ENST00000299084.4:c.207+1G>T		p.X69_splice	ENST00000299084	NM_152594.2	69																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3777819	3777819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	181	930	0	ENST00000262367.5:c.7229C>G	p.Pro2410Arg	p.P2410R	ENST00000262367	NM_004380.2	2410	cCc/cGc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9928000	9928000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	66	368	0	ENST00000330684.3:c.1739G>A	p.Ser580Asn	p.S580N	ENST00000330684	NM_001134407.1	580	aGc/aAc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17129578	17129578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	141	717	2	ENST00000285071.4:c.308C>A	p.Ser103Tyr	p.S103Y	ENST00000285071	NM_144997.5	103	tCc/tAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48603033	48603033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	68	373	0	ENST00000342988.3:c.1334G>T	p.Arg445Leu	p.R445L	ENST00000342988	NM_005359.5	445	cGa/cTa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096100	178096100	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	97	439	0	ENST00000397062.3:c.1231C>T	p.Gln411Ter	p.Q411*	ENST00000397062	NM_006164.4	411	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89176402	89176402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	62	259	0	ENST00000336596.2:c.132G>C	p.Trp44Cys	p.W44C	ENST00000336596	NM_005233.5	44	tgG/tgC																																																																														
GATA2	2624	MSKCC	GRCh37	3	128200041	128200041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	131	740	1	ENST00000341105.2:c.1264C>A	p.Gln422Lys	p.Q422K	ENST00000341105	NM_032638.4	422	Cag/Aag																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169953120	169953120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	104	365	0	ENST00000295797.4:c.204G>A	p.Met68Ile	p.M68I	ENST00000295797	NM_002740.5	68	atG/atA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630533	187630533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	150	648	0	ENST00000441802.2:c.449C>T	p.Ser150Leu	p.S150L	ENST00000441802	NM_005245.3	150	tCa/tTa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109312026	109312026	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	81	367	0	ENST00000436639.2:c.1246G>T	p.Glu416Ter	p.E416*	ENST00000436639	NM_014454.2	416	Gaa/Taa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864827	117864827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	57	485	0	ENST00000297338.2:c.1282G>A	p.Glu428Lys	p.E428K	ENST00000297338	NM_006265.2	428	Gag/Aag																																																																														
AR	367	MSKCC	GRCh37	X	66766086	66766086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	117	693	0	ENST00000374690.3:c.1098C>G	p.Asn366Lys	p.N366K	ENST00000374690	NM_000044.3	366	aaC/aaG																																																																														
MED12	9968	MSKCC	GRCh37	X	70357054	70357054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	89	659	0	ENST00000374080.3:c.5569C>T	p.Pro1857Ser	p.P1857S	ENST00000374080		1857	Cca/Tca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	157	471	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	100	547	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0035515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	100	572	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	109	270	0	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480469	89480469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	29	276	0	ENST00000336596.2:c.2306G>A	p.Arg769His	p.R769H	ENST00000336596	NM_005233.5	769	cGt/cAt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396278	396278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	207	703	0	ENST00000262320.3:c.748G>T	p.Asp250Tyr	p.D250Y	ENST00000262320	NM_003502.3	250	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	66	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	81	660	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	46	495	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11999013	11999013	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	46	289	0	ENST00000353533.5:c.513+2T>C		p.X171_splice	ENST00000353533	NM_003010.3	171																																																																															
PARP1	142	MSKCC	GRCh37	1	226556023	226556023	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	37	289	0	ENST00000366794.5:c.2155-1G>A		p.X719_splice	ENST00000366794	NM_001618.3	719																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971140	21971159	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGTTGGGCTCCGCGCC	GCGCAGTTGGGCTCCGCGCC	-			P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	37	429	0	ENST00000304494.5:c.199_218del	p.Gly67ArgfsTer46	p.G67Rfs*46	ENST00000304494	NM_000077.4	67	GGCGCGGAGCCCAACTGCGCc/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971140	21971159	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGTTGGGCTCCGCGCC	GCGCAGTTGGGCTCCGCGCC	-			P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	37	429	0	ENST00000304494.5:c.199_218del	p.Gly67ArgfsTer46	p.G67Rfs*46	ENST00000304494	NM_000077.4	67	GGCGCGGAGCCCAACTGCGCc/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971140	21971159	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGTTGGGCTCCGCGCC	GCGCAGTTGGGCTCCGCGCC	-			P-0035524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	37	429	0	ENST00000304494.5:c.199_218del	p.Gly67ArgfsTer46	p.G67Rfs*46	ENST00000304494	NM_000077.4	67	GGCGCGGAGCCCAACTGCGCc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	159	469	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578547	7578552	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GGGGAG	GGGGAG	-			P-0035525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	183	813	0	ENST00000269305.4:c.378_383del	p.Ser127_Pro128del	p.S127_P128del	ENST00000269305	NM_001126112.2	126	taCTCCCCt/tat																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573530	48573530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	95	315	0	ENST00000342988.3:c.114del	p.Ala39GlnfsTer6	p.A39Qfs*6	ENST00000342988	NM_005359.5	38	agA/ag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974774	21974783	+	protein_altering_variant	In_Frame_Del	DEL	GTGGCCAGCC	GTGGCCAGCC	A			P-0035525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	79	156	0	ENST00000304494.5:c.44_53delinsT	p.Trp15_Thr18delinsLeu	p.W15_T18delinsL	ENST00000304494	NM_000077.4	15	tGGCTGGCCACg/tTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974774	21974783	+	protein_altering_variant	In_Frame_Del	DEL	GTGGCCAGCC	GTGGCCAGCC	A			P-0035525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	79	156	0	ENST00000304494.5:c.44_53delinsT	p.Trp15_Thr18delinsLeu	p.W15_T18delinsL	ENST00000304494	NM_000077.4	15	tGGCTGGCCACg/tTg																																																																														
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	343	439	0	ENST00000288135.5:c.2466T>G	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971184	21971184	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs201208890		P-0035576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	24	312	0	ENST00000361570.3:c.340A>C	p.Ser114Arg	p.S114R	ENST00000361570	NM_058195.3	114	Agt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971184	21971184	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs201208890		P-0035576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	24	312	0	ENST00000361570.3:c.340A>C	p.Ser114Arg	p.S114R	ENST00000361570	NM_058195.3	114	Agt/Cgt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041041	42041041	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	496	559	0	ENST00000219905.7:c.5419C>T	p.Gln1807Ter	p.Q1807*	ENST00000219905	NM_001164273.1	1807	Cag/Tag																																																																														
KIT	3815	MSKCC	GRCh37	4	55593607	55593627	+	inframe_deletion	In_Frame_Del	DEL	AGGTTGTTGAGGAGATAAATG	AGGTTGTTGAGGAGATAAATG	-			P-0035576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	290	384	0	ENST00000288135.5:c.1673_1693del	p.Lys558_Gly565delinsArg	p.K558_G565delinsR	ENST00000288135	NM_000222.2	558	aAGGTTGTTGAGGAGATAAATGga/aga																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0018865-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	264	793	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018865-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	294	777	1	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944755	71944755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018865-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	351	894	0	ENST00000298229.2:c.2179G>T	p.Val727Phe	p.V727F	ENST00000298229	NM_001567.3	727	Gtt/Ttt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715624	30715624	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018865-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	81	380	0	ENST00000359013.4:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000359013	NM_001024847.2	453	Gaa/Caa																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73113284	73113284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018865-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	47	186	0	ENST00000356692.5:c.625G>A	p.Glu209Lys	p.E209K	ENST00000356692		209	Gag/Aag																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664876	138664876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018865-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	47	83	0	ENST00000330315.3:c.689C>T	p.Ala230Val	p.A230V	ENST00000330315	NM_023067.3	230	gCg/gTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913658	32913662	+	frameshift_variant	Frame_Shift_Del	DEL	TACTA	TACTA	-			P-0018865-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	62	392	0	ENST00000380152.3:c.5168_5172del	p.Thr1723SerfsTer2	p.T1723Sfs*2	ENST00000380152		1722	agTACTAta/agta																																																																														
APC	324	MSKCC	GRCh37	5	112177531	112177531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018865-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	135	403	0	ENST00000257430.4:c.6240G>C	p.Leu2080Phe	p.L2080F	ENST00000257430	NM_000038.5	2080	ttG/ttC																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139818405	139818405	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018865-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			842	135	644	0	ENST00000247668.2:c.1240A>C	p.Met414Leu	p.M414L	ENST00000247668	NM_021138.3	414	Atg/Ctg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0033217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	108	801	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023160	150023160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	28	525	0	ENST00000253339.5:c.103C>T	p.Arg35Trp	p.R35W	ENST00000253339		35	Cgg/Tgg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838301	156838302	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0033217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	42	922	2	ENST00000524377.1:c.579_580delinsTT	p.Pro194Ser	p.P194S	ENST00000524377	NM_002529.3	193	gtGCcc/gtTTcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3777721	3777721	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0033217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	60	1081	2	ENST00000262367.5:c.7327T>C	p.Ter2443GlnextTer23	p.*2443Qext*23	ENST00000262367	NM_004380.2	2443	Tag/Cag																																																																														
NF1	4763	MSKCC	GRCh37	17	29663654	29663654	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	32	374	0	ENST00000358273.4:c.6149T>C	p.Val2050Ala	p.V2050A	ENST00000358273	NM_001042492.2	2050	gTt/gCt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	154	535	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	132	667	1	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740709	145740709	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0035041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	29	544	0	ENST00000428558.2:c.1390+1G>A		p.X464_splice	ENST00000428558	NM_004260.3	464																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44966730	44966730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	106	459	0	ENST00000377967.4:c.3954A>G	p.Ile1318Met	p.I1318M	ENST00000377967	NM_021140.2	1318	atA/atG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	330	620	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	202	467	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	53	382	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	62	399	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	361	678	1	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																														
BARD1	580	MSKCC	GRCh37	2	215674186	215674186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	98	526	0	ENST00000260947.4:c.108C>G	p.His36Gln	p.H36Q	ENST00000260947	NM_000465.2	36	caC/caG																																																																														
CBL	867	MSKCC	GRCh37	11	119142584	119142584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	37	318	0	ENST00000264033.4:c.583G>T	p.Gly195Trp	p.G195W	ENST00000264033	NM_005188.3	195	Ggg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	283	445	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29002038	29002038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	53	411	0	ENST00000282397.4:c.1127C>T	p.Ala376Val	p.A376V	ENST00000282397	NM_002019.4	376	gCg/gTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724782	43724783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	90	650	0	ENST00000382044.4:c.3284dup	p.Met1095IlefsTer5	p.M1095Ifs*5	ENST00000382044	NM_001141980.1	1095	atg/atTg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217667	7217667	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	174	499	2	ENST00000380728.2:c.260T>C	p.Phe87Ser	p.F87S	ENST00000380728		87	tTc/tCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578262	7578263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	185	587	3	ENST00000269305.4:c.586_587insT	p.Arg196LeufsTer13	p.R196Lfs*13	ENST00000269305	NM_001126112.2	196	cga/cTga																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66526546	66526546	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	61	381	1	ENST00000358598.2:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000358598	NM_212471.2	368	Cga/Tga																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794982	242794982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	196	844	10	ENST00000334409.5:c.227C>T	p.Thr76Met	p.T76M	ENST00000334409	NM_005018.2	76	aCg/aTg																																																																														
ERG	2078	MSKCC	GRCh37	21	39775482	39775482	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	77	607	1	ENST00000288319.7:c.538A>G	p.Thr180Ala	p.T180A	ENST00000288319	NM_182918.3	180	Acc/Gcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	168	524	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55131146	55131146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	140	566	1	ENST00000257290.5:c.689C>T	p.Thr230Met	p.T230M	ENST00000257290	NM_006206.4	230	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	68	243	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158619	26158682	+	frameshift_variant	Frame_Shift_Del	DEL	CGCAGGCGAGGCTTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATC	CGCAGGCGAGGCTTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATC	-			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	58	212	0	ENST00000289316.2:c.223_286del	p.Ala75ArgfsTer39	p.A75Rfs*39	ENST00000289316	NM_138720.2	74	atCGCAGGCGAGGCTTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATC/at																																																																														
PARK2	5071	MSKCC	GRCh37	6	162475192	162475192	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	50	352	0	ENST00000366898.1:c.549G>A	p.Trp183Ter	p.W183*	ENST00000366898	NM_004562.2	183	tgG/tgA																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953088	2953088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	102	660	0	ENST00000396946.4:c.2852A>C	p.Glu951Ala	p.E951A	ENST00000396946	NM_032415.4	951	gAg/gCg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372279	55372280	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0035337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	58	360	0	ENST00000297316.4:c.969_970delinsAA	p.His323_Gln324delinsGlnLys	p.H323_Q324delinsQK	ENST00000297316	NM_022454.3	323	caCCag/caAAag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	157	477	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	20	284	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	36	680	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573628	48573628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	27	386	1	ENST00000342988.3:c.212G>T	p.Cys71Phe	p.C71F	ENST00000342988	NM_005359.5	71	tGt/tTt																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518781	204518781	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	16	319	0	ENST00000367182.3:c.1444C>G	p.Gln482Glu	p.Q482E	ENST00000367182	NM_001278516.1	482	Cag/Gag																																																																														
RET	5979	MSKCC	GRCh37	10	43617449	43617449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	49	549	0	ENST00000355710.3:c.2786C>T	p.Thr929Ile	p.T929I	ENST00000355710	NM_020975.4	929	aCc/aTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589793	28589793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	39	505	0	ENST00000241453.7:c.2587G>T	p.Gly863Cys	p.G863C	ENST00000241453	NM_004119.2	863	Ggc/Tgc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348112	348112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	48	825	1	ENST00000262320.3:c.1394A>C	p.Glu465Ala	p.E465A	ENST00000262320	NM_003502.3	465	gAg/gCg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945741	17945741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	61	761	0	ENST00000458235.1:c.2119G>T	p.Asp707Tyr	p.D707Y	ENST00000458235	NM_000215.3	707	Gac/Tac																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278041	18278041	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	57	694	0	ENST00000222254.8:c.1661G>C	p.Arg554Thr	p.R554T	ENST00000222254	NM_005027.3	554	aGa/aCa																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308353	30308353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	47	571	0	ENST00000262643.3:c.367A>G	p.Lys123Glu	p.K123E	ENST00000262643	NM_001238.2	123	Aag/Gag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268891	55268891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	53	772	0	ENST00000275493.2:c.2957G>A	p.Arg986Lys	p.R986K	ENST00000275493	NM_005228.3	986	aGa/aAa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227682	53227682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	42	599	0	ENST00000375401.3:c.2506C>T	p.Gln836Ter	p.Q836*	ENST00000375401	NM_004187.3	836	Cag/Tag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960039	134960039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	139	555	0	ENST00000398015.3:c.2396G>A	p.Arg799His	p.R799H	ENST00000398015	NM_004441.4	799	cGc/cAc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039451	49039457	+	frameshift_variant	Frame_Shift_Del	DEL	ATATAAA	ATATAAA	-			P-0035436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	121	457	0	ENST00000267163.4:c.2438_2444del	p.Tyr813PhefsTer11	p.Y813Ffs*11	ENST00000267163	NM_000321.2	812	ccATATAAA/cc																																																																														
CALR	811	MSKCC	GRCh37	19	13051431	13051431	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	30	391	0	ENST00000316448.5:c.779A>T	p.Glu260Val	p.E260V	ENST00000316448	NM_004343.3	260	gAg/gTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589587	67589588	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAATATAACACTCAGTTTCAAGAAAAAAGTCGAGAATATGATAGATTATATGAA			P-0035436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	38	190	0	ENST00000274335.5:c.1358_1411dup	p.Asn453_Tyr470dup	p.N453_Y470dup	ENST00000274335		453	-/GAATATAACACTCAGTTTCAAGAAAAAAGTCGAGAATATGATAGATTATATGAA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	65	418	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0035438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	102	492	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	45	268	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	24	184	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	35	221	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097608	27097608	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0035438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	67	364	0	ENST00000324856.7:c.3199-2A>T		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																																																															
SPOP	8405	MSKCC	GRCh37	17	47696405	47696405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	88	442	0	ENST00000347630.2:c.418G>T	p.Asp140Tyr	p.D140Y	ENST00000347630	NM_001007230.1	140	Gat/Tat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16174567	16174567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	41	232	0	ENST00000375759.3:c.5T>C	p.Val2Ala	p.V2A	ENST00000375759	NM_015001.2	2	gTc/gCc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685273	89685278	+	inframe_deletion	In_Frame_Del	DEL	TTTGGA	TTTGGA	-			P-0035438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	23	208	0	ENST00000371953.3:c.170_175del	p.Leu57_Asp58del	p.L57_D58del	ENST00000371953	NM_000314.4	56	ttTTTGGAt/ttt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463250	25463250	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	91	397	0	ENST00000264709.3:c.2243A>G	p.Asp748Gly	p.D748G	ENST00000264709	NM_175629.2	748	gAt/gGt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	87	590	0	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	80	489	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0035439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	46	635	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37092047	37092047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	35	511	2	ENST00000231790.2:c.2174G>A	p.Arg725His	p.R725H	ENST00000231790	NM_000249.3	725	cGc/cAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932096	39932096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	55	750	1	ENST00000378444.4:c.2503G>A	p.Ala835Thr	p.A835T	ENST00000378444	NM_001123385.1	835	Gct/Act																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105656	27105660	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCT	CAGCT	-			P-0035439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	41	435	0	ENST00000324856.7:c.5268_5272del	p.Ala1757HisfsTer14	p.A1757Hfs*14	ENST00000324856	NM_006015.4	1756	cCAGCT/c																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720705	89720706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0035439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	14	161	0	ENST00000371953.3:c.858dup	p.Ser287LeufsTer11	p.S287Lfs*11	ENST00000371953	NM_000314.4	286	acc/aCcc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593252	67593253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0035439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	19	228	0	ENST00000274335.5:c.1999_2000dup	p.Lys668Ter	p.K668*	ENST00000274335		666	-/GT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	85	530	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0035444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	83	687	1	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39241093	39241093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	86	587	0	ENST00000402219.2:c.1978C>T	p.Arg660Cys	p.R660C	ENST00000402219	NM_005633.3	660	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577149	7577149	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	462	520	0	ENST00000269305.4:c.789delT	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	263	aaT/aa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	135	338	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371732	55371732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	114	421	0	ENST00000297316.4:c.422G>A	p.Arg141Gln	p.R141Q	ENST00000297316	NM_022454.3	141	cGg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971178	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0035446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	185	307	0	ENST00000304494.5:c.180_181delinsTT	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	60	gcGGag/gcTTag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971178	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0035446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	185	307	0	ENST00000304494.5:c.180_181delinsTT	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	60	gcGGag/gcTTag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971177	21971178	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0035446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	185	307	0	ENST00000304494.5:c.180_181delinsTT	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	60	gcGGag/gcTTag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	116	678	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	784	717	1	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	107	771	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0035449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	358	683	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	173	701	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371810	55371831	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCCCCGAGGGCGGCCGCGT	TGGGCCCCGAGGGCGGCCGCGT	-			P-0035449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	43	102	0	ENST00000297316.4:c.500_521del	p.Leu167ArgfsTer213	p.L167Rfs*213	ENST00000297316	NM_022454.3	167	cTGGGCCCCGAGGGCGGCCGCGTg/cg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	53	881	2	ENST00000307102.5:c.371C>A	p.Pro124Gln	p.P124Q	ENST00000307102	NM_002755.3	124	cCg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099914	27099914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	52	726	2	ENST00000324856.7:c.3793G>A	p.Gly1265Ser	p.G1265S	ENST00000324856	NM_006015.4	1265	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099124	27099125	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0035449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	99	515	0	ENST00000324856.7:c.3539+2dup		p.X1180_splice	ENST00000324856	NM_006015.4	1180																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56477595	56477595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	373	825	0	ENST00000267101.3:c.143C>T	p.Thr48Ile	p.T48I	ENST00000267101	NM_001982.3	48	aCa/aTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779794	3779794	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	60	1060	0	ENST00000262367.5:c.5254G>T	p.Glu1752Ter	p.E1752*	ENST00000262367	NM_004380.2	1752	Gag/Tag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440372	52440372	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	33	527	0	ENST00000460680.1:c.680G>C	p.Arg227Pro	p.R227P	ENST00000460680	NM_004656.3	227	cGc/cCc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981097	201981097	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	52	545	0	ENST00000359651.3:c.176G>A	p.Trp59Ter	p.W59*	ENST00000359651		59	tGg/tAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49421040	49421561	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACATCCAGATTGGAGACATTGTAGGTATAGCTGTGCTGAGTGGGTGGCTCTGGGGCGGGGCTCTCCTGTAGGAGGGTGCCCTGTATCATTAGTGCCAGCTCCTCATCTAACTAGCTCCCTCCTTCCCCTCACCCATATGCCACCCTCCCAAAAGGCCTCCACATTCTTTGCCCTAGACAGCCTCTTTTTTCTTTTCTTTTCTTTTTTTTTTGAGACACAGTCTTGCTCTGTTGCCCAGGCTGGATCCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGGGATTCTCATGCCTCAGCCTTTCGAGTAGCTGGGATTACAGGCACGCACCATCACGCCTGGCTACTGTTTTGTTTTTGTTTTTAGTAGAGACGGGGTTTCGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGGCCTAAAGTGATTCACTCGCCTTGCCTCCCAAAGCACTGGGATTACAGATGTGAGCCACCGCGCCTGGCCGGCAGCCCCTTTTTTCTAACACCCA	CACATCCAGATTGGAGACATTGTAGGTATAGCTGTGCTGAGTGGGTGGCTCTGGGGCGGGGCTCTCCTGTAGGAGGGTGCCCTGTATCATTAGTGCCAGCTCCTCATCTAACTAGCTCCCTCCTTCCCCTCACCCATATGCCACCCTCCCAAAAGGCCTCCACATTCTTTGCCCTAGACAGCCTCTTTTTTCTTTTCTTTTCTTTTTTTTTTGAGACACAGTCTTGCTCTGTTGCCCAGGCTGGATCCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGGGATTCTCATGCCTCAGCCTTTCGAGTAGCTGGGATTACAGGCACGCACCATCACGCCTGGCTACTGTTTTGTTTTTGTTTTTAGTAGAGACGGGGTTTCGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGGCCTAAAGTGATTCACTCGCCTTGCCTCCCAAAGCACTGGGATTACAGATGTGAGCCACCGCGCCTGGCCGGCAGCCCCTTTTTTCTAACACCCA	-			P-0035451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	37	523	0	ENST00000301067.7:c.14643+25_14709del		p.X4881_splice	ENST00000301067	NM_003482.3	4881																																																																															
MGA	23269	MSKCC	GRCh37	15	42059062	42059063	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGTTATT			P-0035451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	27	392	0	ENST00000219905.7:c.8783_8790dup	p.Asp2931LeufsTer7	p.D2931Lfs*7	ENST00000219905	NM_001164273.1	2928	att/aTTGTTATTtt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351594	89351595	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	69	978	2	ENST00000301030.4:c.1355dup	p.Asn452LysfsTer2	p.N452Kfs*2	ENST00000301030	NM_001256183.1	452	aat/aaAt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621882	1621882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	64	739	1	ENST00000344749.5:c.910G>A	p.Val304Ile	p.V304I	ENST00000344749	NM_001136139.2	304	Gtc/Atc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953957	17953957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	72	681	4	ENST00000458235.1:c.445C>T	p.Arg149Cys	p.R149C	ENST00000458235	NM_000215.3	149	Cgc/Tgc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266531	198266531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	50	486	0	ENST00000335508.6:c.2305G>A	p.Val769Met	p.V769M	ENST00000335508	NM_012433.2	769	Gtg/Atg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437901	52437901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	64	817	0	ENST00000460680.1:c.1260delG	p.Lys421ArgfsTer9	p.K421Rfs*9	ENST00000460680	NM_004656.3	420	ggG/gg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860287	151860288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	34	546	0	ENST00000262189.6:c.10374dup	p.Pro3459ThrfsTer3	p.P3459Tfs*3	ENST00000262189	NM_170606.2	3458	-/A																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	231	467	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	231	535	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	109	341	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	133	293	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	476	676	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	153	623	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	45	226	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	321	522	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099402	157099403	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	20	171	0	ENST00000346085.5:c.360_362dupGCA	p.Gln131dup	p.Q131dup	ENST00000346085	NM_020732.3	131	-/CAG																																																																														
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	352	866	2	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	31	400	2	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	87	297	2	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	33	162	1	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	320	702	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069060	5069060	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	100	240	0	ENST00000381652.3:c.1370del	p.Asn457MetfsTer22	p.N457Mfs*22	ENST00000381652	NM_004972.3	455	acA/ac																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	165	389	0	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	262	655	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	191	785	3	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	303	616	2	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
INSR	3643	MSKCC	GRCh37	19	7172331	7172331	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758151117		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	203	400	1	ENST00000302850.5:c.1238G>A	p.Arg413His	p.R413H	ENST00000302850	NM_000208.2	413	cGt/cAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	159	369	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	232	323	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	233	453	14	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2131719	2131719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	103	751	0	ENST00000219476.3:c.3734G>A	p.Arg1245Gln	p.R1245Q	ENST00000219476	NM_000548.3	1245	cGg/cAg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740467	58740467	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	234	565	0	ENST00000305921.3:c.1372C>T	p.Arg458Ter	p.R458*	ENST00000305921	NM_003620.3	458	Cga/Tga																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73774681	73774682	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	32	101	0	ENST00000254810.4:c.405_406delAG	p.Arg135SerfsTer12	p.R135Sfs*12	ENST00000254810	NM_005324.3	135	agAGct/agct																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	59	378	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
ATR	545	MSKCC	GRCh37	3	142269009	142269009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	202	387	4	ENST00000350721.4:c.2941G>A	p.Val981Ile	p.V981I	ENST00000350721	NM_001184.3	981	Gtt/Att																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370927	55370927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	318	533	2	ENST00000297316.4:c.229G>A	p.Val77Met	p.V77M	ENST00000297316	NM_022454.3	77	Gtg/Atg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	215	432	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	53	184	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37882874	37882874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	272	758	0	ENST00000269571.5:c.2932C>T	p.Arg978Cys	p.R978C	ENST00000269571		978	Cgc/Tgc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	108	429	1	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
GNA11	2767	MSKCC	GRCh37	19	3114952	3114952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	283	619	0	ENST00000078429.4:c.487G>A	p.Asp163Asn	p.D163N	ENST00000078429	NM_002067.2	163	Gac/Aac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2946319	2946319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	384	817	0	ENST00000396946.4:c.3418G>A	p.Gly1140Ser	p.G1140S	ENST00000396946	NM_032415.4	1140	Ggc/Agc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296203	15296204	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	257	699	3	ENST00000263388.2:c.2160_2161del	p.Cys720Ter	p.C720*	ENST00000263388	NM_000435.2	720	tgTGag/tgag																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	433	496	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	166	753	0	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	29	451	1	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	378	825	2	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
HIST1H3F	8968	MSKCC	GRCh37	6	26250676	26250676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	194	571	0	ENST00000446824.2:c.158G>A	p.Arg53His	p.R53H	ENST00000446824	NM_021018.2	53	cGc/cAc																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	247	526	0	ENST00000312629.5:c.870delC	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467736	50467736	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	119	448	0	ENST00000331340.3:c.971C>G	p.Ala324Gly	p.A324G	ENST00000331340	NM_006060.4	324	gCc/gGc																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165657	118165657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	185	342	0	ENST00000369448.3:c.167G>A	p.Arg56His	p.R56H	ENST00000369448	NM_017709.3	56	cGc/cAc																																																																														
ATR	545	MSKCC	GRCh37	3	142242899	142242899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750252420		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	230	474	0	ENST00000350721.4:c.4088C>T	p.Ala1363Val	p.A1363V	ENST00000350721	NM_001184.3	1363	gCg/gTg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324463	31324463	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	103	560	0	ENST00000412585.2:c.343+2T>C		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																															
POLD1	5424	MSKCC	GRCh37	19	50910259	50910259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	272	614	0	ENST00000440232.2:c.1514G>A	p.Arg505His	p.R505H	ENST00000440232	NM_002691.3	505	cGc/cAc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803500	32803500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	339	638	1	ENST00000374899.4:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000374899	NM_018833.2	220	cGa/cAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444933	49444933	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	139	480	4	ENST00000301067.7:c.2533del	p.Arg845GlyfsTer85	p.R845Gfs*85	ENST00000301067	NM_003482.3	845	Cgg/gg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151849873	151849873	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141718495		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	163	325	1	ENST00000262189.6:c.12443C>T	p.Pro4148Leu	p.P4148L	ENST00000262189	NM_170606.2	4148	cCg/cTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244233	5244233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	75	643	0	ENST00000357368.4:c.1249G>A	p.Val417Met	p.V417M	ENST00000357368	NM_002850.3	417	Gtg/Atg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31464435	31464435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	81	726	0	ENST00000344624.3:c.2482delA	p.Ile828TyrfsTer7	p.I828Yfs*7	ENST00000344624		828	Ata/ta																																																																														
TET1	80312	MSKCC	GRCh37	10	70405373	70405373	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	110	528	0	ENST00000373644.4:c.2887A>G	p.Ser963Gly	p.S963G	ENST00000373644	NM_030625.2	963	Agt/Ggt																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741574	17741574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	48	192	0	ENST00000250003.3:c.245G>A	p.Arg82His	p.R82H	ENST00000250003	NM_002478.4	82	cGc/cAc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94212014	94212014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	148	348	0	ENST00000323929.3:c.431T>C	p.Leu144Ser	p.L144S	ENST00000323929	NM_005591.3	144	tTa/tCa																																																																														
ATM	472	MSKCC	GRCh37	11	108216524	108216525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	74	367	0	ENST00000278616.4:c.8477dup	p.Asn2826LysfsTer22	p.N2826Kfs*22	ENST00000278616	NM_000051.3	2825	caa/cAaa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245921	46245921	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	101	305	0	ENST00000334344.6:c.4015C>T	p.Gln1339Ter	p.Q1339*	ENST00000334344	NM_152641.2	1339	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431576	49431576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	194	570	1	ENST00000301067.7:c.9563C>T	p.Thr3188Met	p.T3188M	ENST00000301067	NM_003482.3	3188	aCg/aTg																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50492534	50492534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	296	630	1	ENST00000394963.4:c.1430G>A	p.Arg477His	p.R477H	ENST00000394963	NM_003076.4	477	cGc/cAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112229	115112229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	136	235	1	ENST00000257566.3:c.1511C>T	p.Ala504Val	p.A504V	ENST00000257566	NM_016569.3	504	gCc/gTc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800903	120800903	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	209	691	1	ENST00000257552.2:c.345del	p.Leu116CysfsTer3	p.L116Cfs*3	ENST00000257552	NM_002442.3	115	ggG/gg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73355756	73355756	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	106	363	0	ENST00000377767.4:c.215T>A	p.Val72Glu	p.V72E	ENST00000377767	NM_014953.3	72	gTg/gAg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606144	81606144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	247	456	0	ENST00000298171.2:c.814C>A	p.Leu272Ile	p.L272I	ENST00000298171	NM_000369.2	272	Ctc/Atc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572081	95572081	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	220	573	0	ENST00000343455.3:c.3027del	p.Ala1011ArgfsTer4	p.A1011Rfs*4	ENST00000343455	NM_177438.2	1009	ggG/gg																																																																														
MGA	23269	MSKCC	GRCh37	15	42053989	42053989	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	16	278	0	ENST00000219905.7:c.7451A>T	p.Gln2484Leu	p.Q2484L	ENST00000219905	NM_001164273.1	2484	cAg/cTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43771722	43771722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	377	517	1	ENST00000382044.4:c.661A>T	p.Ile221Phe	p.I221F	ENST00000382044	NM_001141980.1	221	Att/Ttt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041606	14041606	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	226	462	0	ENST00000311895.7:c.2153T>A	p.Leu718His	p.L718H	ENST00000311895	NM_005236.2	718	cTc/cAc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641061	23641061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	126	742	0	ENST00000261584.4:c.2414T>C	p.Val805Ala	p.V805A	ENST00000261584	NM_024675.3	805	gTc/gCc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822112	72822112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	37	500	0	ENST00000268489.5:c.10063C>A	p.Leu3355Met	p.L3355M	ENST00000268489	NM_006885.3	3355	Ctg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828399	72828399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	256	578	0	ENST00000268489.5:c.8182G>A	p.Ala2728Thr	p.A2728T	ENST00000268489	NM_006885.3	2728	Gct/Act																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830402	72830402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	25	340	0	ENST00000268489.5:c.6179C>A	p.Ser2060Tyr	p.S2060Y	ENST00000268489	NM_006885.3	2060	tCc/tAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350806	89350806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	241	955	0	ENST00000301030.4:c.2144A>G	p.Glu715Gly	p.E715G	ENST00000301030	NM_001256183.1	715	gAa/gGa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16062155	16062157	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	286	517	0	ENST00000268712.3:c.649_651del	p.Pro217del	p.P217del	ENST00000268712	NM_006311.3	217	CCT/-																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215948	41215948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	143	355	0	ENST00000357654.3:c.5095C>T	p.Arg1699Trp	p.R1699W	ENST00000357654	NM_007294.3	1699	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437588	56437588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	172	450	0	ENST00000407977.2:c.874C>A	p.His292Asn	p.H292N	ENST00000407977		292	Cat/Aat																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66525011	66525011	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	97	249	0	ENST00000358598.2:c.770A>T	p.Glu257Val	p.E257V	ENST00000358598	NM_212471.2	257	gAg/gTg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753479	42753479	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	48	700	0	ENST00000222329.4:c.785del	p.Pro262LeufsTer9	p.P262Lfs*9	ENST00000222329	NM_006494.2	262	cCt/ct																																																																														
CIC	23152	MSKCC	GRCh37	19	42796772	42796772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	320	768	0	ENST00000575354.2:c.3230G>A	p.Ser1077Asn	p.S1077N	ENST00000575354	NM_015125.3	1077	aGt/aAt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39214661	39214661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	134	564	0	ENST00000402219.2:c.3463C>T	p.Pro1155Ser	p.P1155S	ENST00000402219	NM_005633.3	1155	Cca/Tca																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46611734	46611734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	289	661	1	ENST00000263734.3:c.2548G>A	p.Val850Met	p.V850M	ENST00000263734	NM_001430.4	850	Gtg/Atg																																																																														
CASP8	841	MSKCC	GRCh37	2	202149611	202149611	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	256	455	0	ENST00000358485.4:c.1052T>A	p.Ile351Asn	p.I351N	ENST00000358485	NM_001080125.1	351	aTc/aAc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212587118	212587118	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs74898139		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	136	325	0	ENST00000342788.4:c.883C>T	p.His295Tyr	p.H295Y	ENST00000342788	NM_005235.2	295	Cat/Tat																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538286	9538286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	233	515	1	ENST00000353224.5:c.1712G>A	p.Ser571Asn	p.S571N	ENST00000353224	NM_177990.2	571	aGt/aAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790011	40790011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	228	493	0	ENST00000373198.4:c.2720G>T	p.Gly907Val	p.G907V	ENST00000373198	NM_133170.3	907	gGg/gTg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46268568	46268568	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	112	268	0	ENST00000371998.3:c.2953+2T>C		p.X985_splice	ENST00000371998		985																																																																															
RTEL1	51750	MSKCC	GRCh37	20	62292834	62292834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	135	264	0	ENST00000508582.2:c.286G>A	p.Ala96Thr	p.A96T	ENST00000508582		96	Gct/Act																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30648436	30648436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	122	455	1	ENST00000359013.4:c.61G>A	p.Ala21Thr	p.A21T	ENST00000359013	NM_001024847.2	21	Gcc/Acc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138478152	138478152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	173	395	0	ENST00000289153.2:c.34G>A	p.Ala12Thr	p.A12T	ENST00000289153	NM_006219.2	12	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178947131	178947131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	177	315	0	ENST00000263967.3:c.2567C>A	p.Thr856Asn	p.T856N	ENST00000263967	NM_006218.2	856	aCt/aAt																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1955081	1955081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	340	739	0	ENST00000382891.5:c.2168G>A	p.Ser723Asn	p.S723N	ENST00000382891	NM_133335.3	723	aGc/aAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244200	153244200	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	43	456	1	ENST00000281708.4:c.1957del	p.Thr653ArgfsTer8	p.T653Rfs*8	ENST00000281708	NM_033632.3	653	Acg/cg																																																																														
TERT	7015	MSKCC	GRCh37	5	1264594	1264594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	284	654	1	ENST00000310581.5:c.2768C>T	p.Pro923Leu	p.P923L	ENST00000310581	NM_198253.2	923	cCg/cTg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31421419	31421419	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	60	487	0	ENST00000344624.3:c.3485T>C	p.Leu1162Ser	p.L1162S	ENST00000344624		1162	tTa/tCa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871174	35871174	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	61	301	0	ENST00000303115.3:c.399del	p.Phe133LeufsTer3	p.F133Lfs*3	ENST00000303115	NM_002185.3	132	ccT/cc																																																																														
IRF4	3662	MSKCC	GRCh37	6	395919	395919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	169	395	0	ENST00000380956.4:c.476C>A	p.Pro159His	p.P159H	ENST00000380956	NM_001195286.1	159	cCt/cAt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816536	32816536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	389	684	1	ENST00000354258.4:c.1639C>T	p.Arg547Cys	p.R547C	ENST00000354258	NM_000593.5	547	Cgc/Tgc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983866	2983866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	318	616	0	ENST00000396946.4:c.664A>G	p.Ser222Gly	p.S222G	ENST00000396946	NM_032415.4	222	Agc/Ggc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151836296	151836296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	240	447	0	ENST00000262189.6:c.14509G>A	p.Ala4837Thr	p.A4837T	ENST00000262189	NM_170606.2	4837	Gcg/Acg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38315000	38315000	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200766494		P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	365	674	0	ENST00000425967.3:c.64G>A	p.Gly22Arg	p.G22R	ENST00000425967	NM_001174067.1	22	Gga/Aga																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104574	69104574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	346	670	0	ENST00000288368.4:c.4418T>C	p.Met1473Thr	p.M1473T	ENST00000288368	NM_024870.2	1473	aTg/aCg																																																																														
TEK	7010	MSKCC	GRCh37	9	27204926	27204926	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	30	378	0	ENST00000380036.4:c.2232del	p.Lys745ArgfsTer5	p.K745Rfs*5	ENST00000380036	NM_000459.3	743	Ggg/gg																																																																														
FANCC	2176	MSKCC	GRCh37	9	97864065	97864065	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	54	608	0	ENST00000289081.3:c.1601A>C	p.Asn534Thr	p.N534T	ENST00000289081	NM_000136.2	534	aAt/aCt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209366	98209366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	185	502	0	ENST00000331920.6:c.4172G>A	p.Arg1391Gln	p.R1391Q	ENST00000331920	NM_000264.3	1391	cGg/cAg																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900369	101900371	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AAG	AAG	-			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	79	219	0	ENST00000374994.4:c.803_805del	p.Lys268_Asp269delinsAsn	p.K268_D269delinsN	ENST00000374994	NM_004612.2	268	aAAGac/aac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395216	139395216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	167	788	1	ENST00000277541.6:c.5722G>A	p.Ala1908Thr	p.A1908T	ENST00000277541	NM_017617.3	1908	Gcc/Acc																																																																														
ARAF	369	MSKCC	GRCh37	X	47428988	47428988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	147	308	0	ENST00000377045.4:c.1351G>A	p.Ala451Thr	p.A451T	ENST00000377045	NM_001654.4	451	Gcc/Acc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246353	53246353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	35	271	0	ENST00000375401.3:c.629G>A	p.Gly210Asp	p.G210D	ENST00000375401	NM_004187.3	210	gGc/gAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411979	63411979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	257	370	0	ENST00000330258.3:c.1188G>T	p.Glu396Asp	p.E396D	ENST00000330258	NM_152424.3	396	gaG/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0035466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	57	728	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0035466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	29	458	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641180	3641180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	167	1217	1	ENST00000294008.3:c.2459G>C	p.Arg820Thr	p.R820T	ENST00000294008	NM_032444.2	820	aGg/aCg																																																																														
SRC	6714	MSKCC	GRCh37	20	36022653	36022653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	50	502	0	ENST00000358208.4:c.526C>G	p.Leu176Val	p.L176V	ENST00000358208		176	Ctc/Gtc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696438	47696438	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	199	567	0	ENST00000347630.2:c.385A>G	p.Lys129Glu	p.K129E	ENST00000347630	NM_001007230.1	129	Aaa/Gaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385152	41385152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	190	632	1	ENST00000373198.4:c.809G>A	p.Arg270His	p.R270H	ENST00000373198	NM_133170.3	270	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579477	7579477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	254	715	0	ENST00000269305.4:c.210del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	70	gcT/gc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827820	72827821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	209	708	0	ENST00000268489.5:c.8760dup	p.Ala2921CysfsTer19	p.A2921Cfs*19	ENST00000268489	NM_006885.3	2920	-/T																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249350	110249350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	365	1114	0	ENST00000374672.4:c.1223C>T	p.Thr408Ile	p.T408I	ENST00000374672	NM_004235.4	408	aCa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0035473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	251	746	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118784	115118784	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	493	679	0	ENST00000257566.3:c.557T>G	p.Ile186Ser	p.I186S	ENST00000257566	NM_016569.3	186	aTt/aGt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78857632	78857632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	368	862	0	ENST00000306801.3:c.1702G>A	p.Asp568Asn	p.D568N	ENST00000306801	NM_020761.2	568	Gac/Aac																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484634	57484634	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	188	598	0	ENST00000371085.3:c.718G>A	p.Asp240Asn	p.D240N	ENST00000371085	NM_000516.4	240	Gat/Aat																																																																														
VHL	7428	MSKCC	GRCh37	3	10188202	10188202	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	330	678	0	ENST00000256474.2:c.346delC	p.Leu116PhefsTer43	p.L116Ffs*43	ENST00000256474	NM_000551.3	115	caC/ca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643962	52643962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	132	397	0	ENST00000394830.3:c.1934G>T	p.Ser645Ile	p.S645I	ENST00000394830	NM_018313.4	645	aGt/aTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1294111	1294111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	277	1100	0	ENST00000310581.5:c.890C>G	p.Pro297Arg	p.P297R	ENST00000310581	NM_198253.2	297	cCa/cGa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591102	67591113	+	inframe_deletion	In_Frame_Del	DEL	CATTAAACCAGA	CATTAAACCAGA	-			P-0035473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	61	232	0	ENST00000274335.5:c.1696_1707del	p.Ile566_Asp569del	p.I566_D569del	ENST00000274335		565	agCATTAAACCAGAc/agc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637615	176637615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	111	616	0	ENST00000439151.2:c.2215G>T	p.Val739Phe	p.V739F	ENST00000439151	NM_022455.4	739	Gtt/Ttt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135782201	135782201	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	98	453	0	ENST00000298552.3:c.1355del	p.Gly452ValfsTer5	p.G452Vfs*5	ENST00000298552	NM_001162426.1	452	gGt/gt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			108	374	609	0	ENST00000206249.3:c.1609T>G	p.Tyr537Asp	p.Y537D	ENST00000206249	NM_000125.3	537	Tat/Gat																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245586	41245587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1519	410	1035	4	ENST00000357654.3:c.1961dup	p.Tyr655ValfsTer18	p.Y655Vfs*18	ENST00000357654	NM_007294.3	654	aag/aaAg																																																																														
TEK	7010	MSKCC	GRCh37	9	27204960	27204960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	311	580	0	ENST00000380036.4:c.2261C>T	p.Ser754Phe	p.S754F	ENST00000380036	NM_000459.3	754	tCt/tTt																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216703	7216704	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			110	558	475	0	ENST00000380728.2:c.719dup	p.Thr241AspfsTer20	p.T241Dfs*20	ENST00000380728		240	cag/caAg																																																																														
CIC	23152	MSKCC	GRCh37	19	42798830	42798830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	465	897	0	ENST00000575354.2:c.4402G>A	p.Asp1468Asn	p.D1468N	ENST00000575354	NM_015125.3	1468	Gac/Aac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591247	67591247	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0022166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			538	235	390	0	ENST00000274335.5:c.1746-1G>T		p.X582_splice	ENST00000274335		582																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49426492	49426492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1392	548	1129	3	ENST00000301067.7:c.11996C>G	p.Pro3999Arg	p.P3999R	ENST00000301067	NM_003482.3	3999	cCt/cGt																																																																														
PARP1	142	MSKCC	GRCh37	1	226570832	226570832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			823	311	613	1	ENST00000366794.5:c.1064G>A	p.Arg355His	p.R355H	ENST00000366794	NM_001618.3	355	cGt/cAt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245415	41245600	+	inframe_deletion	In_Frame_Del	DEL	CTTAGTAAAAGAACCAGGTGCATTTGTTAACTTCAGCTCTGGGAAAGTATCGCTGTCATGTCTTTTACTTGTCTGTTCATTTGGCTTGTTACTCTTCTTGGCTCCAGTTGCAGGTTCTTTACCTTCCATGAGTTGTAGGTTTCTGCTGTGCCTGACTGGCATTTGGTTGTACTTTTTTTTCTTTAT	CTTAGTAAAAGAACCAGGTGCATTTGTTAACTTCAGCTCTGGGAAAGTATCGCTGTCATGTCTTTTACTTGTCTGTTCATTTGGCTTGTTACTCTTCTTGGCTCCAGTTGCAGGTTCTTTACCTTCCATGAGTTGTAGGTTTCTGCTGTGCCTGACTGGCATTTGGTTGTACTTTTTTTTCTTTAT	-			P-0022166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1546	365	926	0	ENST00000357654.3:c.1948_2133del	p.Ile650_Lys711del	p.I650_K711del	ENST00000357654	NM_007294.3	650	ATAAAGAAAAAAAAGTACAACCAAATGCCAGTCAGGCACAGCAGAAACCTACAACTCATGGAAGGTAAAGAACCTGCAACTGGAGCCAAGAAGAGTAACAAGCCAAATGAACAGACAAGTAAAAGACATGACAGCGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTCTTTTACTAAG/-																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656835	45656835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	356	630	0	ENST00000407780.3:c.321C>G	p.Asp107Glu	p.D107E	ENST00000407780	NM_001283052.1	107	gaC/gaG																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127530	55127530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1448	225	399	0	ENST00000257290.5:c.318G>T	p.Gln106His	p.Q106H	ENST00000257290	NM_006206.4	106	caG/caT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044859	47044859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	396	888	1	ENST00000329236.7:c.1951G>T	p.Val651Leu	p.V651L	ENST00000329236	NM_001204466.1	651	Gtg/Ttg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349257	15349257	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0022861-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			163	368	462	0	ENST00000263377.2:c.4021-1G>C		p.X1341_splice	ENST00000263377	NM_058243.2	1341																																																																															
ATM	472	MSKCC	GRCh37	11	108121565	108121566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031268-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	168	534	0	ENST00000278616.4:c.1375dup	p.Leu459ProfsTer28	p.L459Pfs*28	ENST00000278616	NM_000051.3	458	tgc/tgCc																																																																														
BARD1	580	MSKCC	GRCh37	2	215645415	215645415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031268-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			834	273	777	0	ENST00000260947.4:c.1183C>A	p.Pro395Thr	p.P395T	ENST00000260947	NM_000465.2	395	Cca/Aca																																																																														
MTOR	2475	MSKCC	GRCh37	1	11182133	11182133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1429	88	537	3	ENST00000361445.4:c.6713G>A	p.Gly2238Asp	p.G2238D	ENST00000361445	NM_004958.3	2238	gGc/gAc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225362541	225362541	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	180	621	0	ENST00000264414.4:c.1636C>T	p.Arg546Ter	p.R546*	ENST00000264414	NM_003590.4	546	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244235	153244235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	89	578	0	ENST00000281708.4:c.1922C>T	p.Ser641Leu	p.S641L	ENST00000281708	NM_033632.3	641	tCa/tTa																																																																														
RB1	5925	MSKCC	GRCh37	13	48947585	48947585	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0034981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	219	632	0	ENST00000267163.4:c.1172C>G	p.Ser391Ter	p.S391*	ENST00000267163	NM_000321.2	391	tCa/tGa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742805	17742805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	41	774	0	ENST00000250003.3:c.713C>T	p.Pro238Leu	p.P238L	ENST00000250003	NM_002478.4	238	cCc/cTc																																																																														
MDM2	4193	MSKCC	GRCh37	12	69218387	69218387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	130	677	0	ENST00000462284.1:c.479C>T	p.Ser160Phe	p.S160F	ENST00000462284	NM_002392.5	160	tCt/tTt																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11349063	11349063	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	48	201	0	ENST00000332029.2:c.273G>C	p.Glu91Asp	p.E91D	ENST00000332029	NM_003745.1	91	gaG/gaC																																																																														
NF1	4763	MSKCC	GRCh37	17	29667527	29667541	+	inframe_deletion	In_Frame_Del	DEL	CGCCTCTGCACAAAG	CGCCTCTGCACAAAG	-			P-0034981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	215	721	1	ENST00000358273.4:c.6927_6941del	p.Pro2310_Ala2314del	p.P2310_A2314del	ENST00000358273	NM_001042492.2	2309	tCGCCTCTGCACAAAGcc/tcc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245910	41245910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	265	959	1	ENST00000357654.3:c.1638G>T	p.Met546Ile	p.M546I	ENST00000357654	NM_007294.3	546	atG/atT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224384	36224384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	144	1001	0	ENST00000222270.7:c.6934C>A	p.Gln2312Lys	p.Q2312K	ENST00000222270	NM_014727.1	2312	Cag/Aag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178097227	178097227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	106	547	0	ENST00000397062.3:c.487C>G	p.Gln163Glu	p.Q163E	ENST00000397062	NM_006164.4	163	Cag/Gag																																																																														
PARK2	5071	MSKCC	GRCh37	6	162394394	162394394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	160	586	0	ENST00000366898.1:c.674C>T	p.Ala225Val	p.A225V	ENST00000366898	NM_004562.2	225	gCt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	870	737	0	ENST00000269305.4:c.490A>T	p.Lys164Ter	p.K164*	ENST00000269305	NM_001126112.2	164	Aag/Tag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35857155	35857155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	118	246	0	ENST00000303115.3:c.76C>G	p.Gln26Glu	p.Q26E	ENST00000303115	NM_002185.3	26	Caa/Gaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70432771	70432771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	233	513	0	ENST00000373644.4:c.4793G>A	p.Arg1598Lys	p.R1598K	ENST00000373644	NM_030625.2	1598	aGa/aAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118369115	118369115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	253	354	0	ENST00000534358.1:c.5833A>G	p.Thr1945Ala	p.T1945A	ENST00000534358	NM_005933.3	1945	Acc/Gcc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35875353	35876375	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCCCAGAGGTATATTATTGTCATGTCTTGTTCACAGAATGGATTGATATCTGTGGTCTCTGGTCCAACCCCTCCTTGAATTGATAGGGCCCCGAGGCCCAGAGAAAGCCAGTCTCTTGACCATGGTCACCCACCTAATTGTGTTAGAGCCAAGACTAGAAATCTGTTCTTCTGATTCCAAGCTCAGAATAAGTGGGAAGACTCAGTGTGCCTGTGCCCTCTGCCATTCACTTCATCTATCAATGTTCTCTGATTTCAGGATTAAGCCTATCGTATGGCCCAGTCTCCCCGATCATAAGAAGACTCTGGAACATCTTTGTAAGAAACCAAGAAAAGTGAGTGTTTTTGGTGCTTAAAAAGTGTTGTGTTGGCAACATCCCAGTGGCCAAGAATGATATTCCAGGACAAGGAACAGTTGAACCTCACCTTTTGGTATTTGATTCATCCTGTAACTAGGGTCCCTCCTAAGACCCTAGCTGCAGTAGGGAACTGAAATAAGATACACATCTCAGAACTTCTGGGCTCCCTGGGGCTGGAGGGCACAGCCAGTGGTCACTTCAAGTCTTGAAGTGTCTCAGAAGCTCCAGAAGCAAAGAGTCCATTGAGGAACATGCTGGCAATTCTGTGACATTCCCTGTCAGAAAACTCTATAGACCTACTCCTGAACTGAACATTTGATGGTGTGTCTCTCTGGTGCCATCTTAATACCCTTTCTCCTTTTTCTGTGCAGAATTTAAATGTGAGTTTCAATCCTGAAAGTTTCCTGGACTGCCAGATTCATAGGGTGGATGACATTCAAGCTAGAGATGAAGTGGAAGGTTTTCTGCAAGATACGTTTCCTCAGCAACTAGAAGAATCTGAGAAGCAGAGGCTTGGAGGGGATGTGCAGAGCCCCAACTGCCCATCTGAGGATGTAGTCATCACTCCAGAAAGCTTTGGAAGAGATTCATCCCTCACATGCCTGGCTGGGAATGTCAGTGCATGTGACGCCCCTATTCTCTCCTCTTCCAGGTCCCTAGAC	TTTTCCCAGAGGTATATTATTGTCATGTCTTGTTCACAGAATGGATTGATATCTGTGGTCTCTGGTCCAACCCCTCCTTGAATTGATAGGGCCCCGAGGCCCAGAGAAAGCCAGTCTCTTGACCATGGTCACCCACCTAATTGTGTTAGAGCCAAGACTAGAAATCTGTTCTTCTGATTCCAAGCTCAGAATAAGTGGGAAGACTCAGTGTGCCTGTGCCCTCTGCCATTCACTTCATCTATCAATGTTCTCTGATTTCAGGATTAAGCCTATCGTATGGCCCAGTCTCCCCGATCATAAGAAGACTCTGGAACATCTTTGTAAGAAACCAAGAAAAGTGAGTGTTTTTGGTGCTTAAAAAGTGTTGTGTTGGCAACATCCCAGTGGCCAAGAATGATATTCCAGGACAAGGAACAGTTGAACCTCACCTTTTGGTATTTGATTCATCCTGTAACTAGGGTCCCTCCTAAGACCCTAGCTGCAGTAGGGAACTGAAATAAGATACACATCTCAGAACTTCTGGGCTCCCTGGGGCTGGAGGGCACAGCCAGTGGTCACTTCAAGTCTTGAAGTGTCTCAGAAGCTCCAGAAGCAAAGAGTCCATTGAGGAACATGCTGGCAATTCTGTGACATTCCCTGTCAGAAAACTCTATAGACCTACTCCTGAACTGAACATTTGATGGTGTGTCTCTCTGGTGCCATCTTAATACCCTTTCTCCTTTTTCTGTGCAGAATTTAAATGTGAGTTTCAATCCTGAAAGTTTCCTGGACTGCCAGATTCATAGGGTGGATGACATTCAAGCTAGAGATGAAGTGGAAGGTTTTCTGCAAGATACGTTTCCTCAGCAACTAGAAGAATCTGAGAAGCAGAGGCTTGGAGGGGATGTGCAGAGCCCCAACTGCCCATCTGAGGATGTAGTCATCACTCCAGAAAGCTTTGGAAGAGATTCATCCCTCACATGCCTGGCTGGGAATGTCAGTGCATGTGACGCCCCTATTCTCTCCTCTTCCAGGTCCCTAGAC	-			P-0035120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1852	105	16	0	ENST00000303115.3:c.801-260_1168del		p.X267_splice	ENST00000303115	NM_002185.3	267																																																																															
PRDM1	639	MSKCC	GRCh37	6	106553023	106553023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	344	615	2	ENST00000369096.4:c.988C>A	p.Pro330Thr	p.P330T	ENST00000369096	NM_001198.3	330	Cca/Aca																																																																														
BRD4	23476	MSKCC	GRCh37	19	15378248	15378248	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	44	598	0	ENST00000263377.2:c.538G>T	p.Gly180Ter	p.G180*	ENST00000263377	NM_058243.2	180	Gga/Tga																																																																														
ETV6	2120	MSKCC	GRCh37	12	12043910	12043910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	135	371	0	ENST00000396373.4:c.1289G>A	p.Arg430Gln	p.R430Q	ENST00000396373	NM_001987.4	430	cGa/cAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106513371	106513371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	64	282	0	ENST00000359195.3:c.2275G>A	p.Val759Ile	p.V759I	ENST00000359195	NM_002649.2	759	Gtc/Atc																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873744	35873745	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0035122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	560	514	0	ENST00000216797.5:c.106_107del	p.Ser36HisfsTer49	p.S36Hfs*49	ENST00000216797	NM_020529.2	36	TCc/c																																																																														
CYLD	1540	MSKCC	GRCh37	16	50830381	50830381	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	134	434	0	ENST00000398568.2:c.2824T>C	p.Cys942Arg	p.C942R	ENST00000398568	NM_001042412.1	942	Tgc/Cgc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59876593	59876593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	165	500	0	ENST00000259008.2:c.1208G>A	p.Arg403Gln	p.R403Q	ENST00000259008	NM_032043.2	403	cGg/cAg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38975651	38975651	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	95	624	0	ENST00000357387.3:c.877C>T	p.Arg293Ter	p.R293*	ENST00000357387	NM_152756.3	293	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	61	666	0	ENST00000269305.4:c.636delT	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808054	1808054	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0035125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	82	947	0	ENST00000260795.2:c.2030T>C	p.Val677Ala	p.V677A	ENST00000260795		677	gTc/gCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	284	633	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	476	488	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	158	267	0				ENST00000310581	NM_198253.2																																																																																
PMS1	5378	MSKCC	GRCh37	2	190682781	190682781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	155	334	0	ENST00000441310.2:c.457C>T	p.Pro153Ser	p.P153S	ENST00000441310	NM_000534.4	153	Cct/Tct																																																																														
NPM1	4869	MSKCC	GRCh37	5	170819725	170819725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	97	182	0	ENST00000296930.5:c.364G>C	p.Asp122His	p.D122H	ENST00000296930	NM_002520.6	122	Gat/Cat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	73	272	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	253	561	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	84	191	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057627	180057627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	272	707	0	ENST00000261937.6:c.328G>A	p.Val110Ile	p.V110I	ENST00000261937	NM_182925.4	110	Gtc/Atc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711993	89711993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	140	275	0	ENST00000371953.3:c.611C>T	p.Pro204Leu	p.P204L	ENST00000371953	NM_000314.4	204	cCa/cTa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73336253	73336253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	39	147	0	ENST00000377767.4:c.2150C>A	p.Thr717Lys	p.T717K	ENST00000377767	NM_014953.3	717	aCa/aAa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989562	212989562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	56	253	0	ENST00000342788.4:c.149G>T	p.Arg50Leu	p.R50L	ENST00000342788	NM_005235.2	50	cGc/cTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944557	40944557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	140	351	0	ENST00000373198.4:c.1945C>A	p.Pro649Thr	p.P649T	ENST00000373198	NM_133170.3	649	Ccc/Acc																																																																														
LYN	4067	MSKCC	GRCh37	8	56912090	56912090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	644	498	0	ENST00000519728.1:c.1320del	p.Ile442PhefsTer11	p.I442Ffs*11	ENST00000519728	NM_002350.3	440	Ggg/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	41	489	0	ENST00000269305.4:c.536A>C	p.His179Pro	p.H179P	ENST00000269305	NM_001126112.2	179	cAt/cCt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026123	71026124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAAA			P-0035219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	116	329	0	ENST00000318789.4:c.1495_1498dup	p.Ala500ValfsTer18	p.A500Vfs*18	ENST00000318789	NM_032682.5	500	gct/gTTTGct																																																																														
APC	324	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	27	194	0	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484634	57484737	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAGGATGCTGTGGGCTTGGCTGTTCGTAAAGAACGCTTTGCTTCTGTGTTGTTAGGGATCAGGGTCGCTGCTCACGCTCTTGGCTTTGCTCTCTTTGGTTAA	GGTAGGATGCTGTGGGCTTGGCTGTTCGTAAAGAACGCTTTGCTTCTGTGTTGTTAGGGATCAGGGTCGCTGCTCACGCTCTTGGCTTTGCTCTCTTTGGTTAA	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	63	450	0	ENST00000371085.3:c.718+1_719-1del		p.X240_splice	ENST00000371085	NM_000516.4	240																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484858	57485003	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTTTGTGGAGTGACCGCCCACCCCCTGCGCTTGCCCAGGAGGCCCTGGTCTGCACTGTTTATAGAGAAGAACCCCGTGCAAGCATTCCAGACCCCTGGCCGAAAGCGCGCTTCTCCCAAGCATTCACACGGCCTCCCTTCTTGT	AGGTTTGTGGAGTGACCGCCCACCCCCTGCGCTTGCCCAGGAGGCCCTGGTCTGCACTGTTTATAGAGAAGAACCCCGTGCAAGCATTCCAGACCCCTGGCCGAAAGCGCGCTTCTCCCAAGCATTCACACGGCCTCCCTTCTTGT	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	79	371	0	ENST00000371085.3:c.839+1_840-1del		p.X280_splice	ENST00000371085	NM_000516.4	280																																																																															
GNAS	2778	MSKCC	GRCh37	20	57485136	57485387	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	GGTGTGTATGGCTTCCACTCTTGCTGGCTGTTCATTGCGGTGGTTCTTTTTCAAACGGTCAGGCTGAAAACCCCCATCCCCCTCCCACCACCAAACCATAAAGGATCTATAAGAGAAGCAAGAAAAACGCACTCCCACTAATTCTCATATGGAAAAATCAGGGTTTTGAAGACTTCAGGAGCTACAGAGATGCTAGCACCCCAGCTCTGCTTGAATTTTAAATTACATTAATATGTATTCCCTTTTTATATA	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	48	250	0	ENST00000371085.3:c.970+1_971-1del		p.X324_splice	ENST00000371085	NM_000516.4	324																																																																															
ALK	238	MSKCC	GRCh37	2	29474041	29474041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs78723472		P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	127	591	0	ENST00000389048.3:c.2134G>A	p.Val712Met	p.V712M	ENST00000389048	NM_004304.4	712	Gtg/Atg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761381	59761381	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	214	426	1	ENST00000259008.2:c.3026del	p.Gly1009AspfsTer50	p.G1009Dfs*50	ENST00000259008	NM_032043.2	1009	gGa/ga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965707	93965707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	94	282	0	ENST00000369303.4:c.2221G>A	p.Gly741Arg	p.G741R	ENST00000369303	NM_004440.3	741	Gga/Aga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485456	57485736	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	GGTGAGTCGAGCCTGTCTTTAGTTTCCTCTCTTGTTCCTCCTCTTTTTCTCATGGATGTAAATTTACTTAATTCCAAATTCAGGGGTTCAGCTACCCAGTTCCATGGTTTTAGTTCACGCACATCCAGTGTGGATTTGAGCTCTTTGCGCCCCTCTTTTTGCTTTTGTTTTCATATGACATCAGAGGCTGGCTGACAGCCGTCCCTGGTAGGTGTCCCCATCAGGGATAGGGTGGTTCCTGGCGAGGGTGTCACTGACAAGTCCCCTTGTTTGTGCCCGCA	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	65	250	0	ENST00000371085.3:c.1038+1_1039-1del		p.X346_splice	ENST00000371085	NM_000516.4	346																																																																															
DICER1	23405	MSKCC	GRCh37	14	95593014	95593014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	87	377	0	ENST00000343455.3:c.806G>T	p.Arg269Ile	p.R269I	ENST00000343455	NM_177438.2	269	aGa/aTa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2121536	2121536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	311	632	0	ENST00000219476.3:c.1865G>T	p.Arg622Leu	p.R622L	ENST00000219476	NM_000548.3	622	cGg/cTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89457216	89457216	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	84	329	0	ENST00000336596.2:c.1698-1G>T		p.X566_splice	ENST00000336596	NM_005233.5	566																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106495	27106495	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	238	438	2	ENST00000324856.7:c.6106G>T	p.Glu2036Ter	p.E2036*	ENST00000324856	NM_006015.4	2036	Gaa/Taa																																																																														
FH	2271	MSKCC	GRCh37	1	241669312	241669312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	54	309	0	ENST00000366560.3:c.895G>T	p.Ala299Ser	p.A299S	ENST00000366560	NM_000143.3	299	Gca/Tca																																																																														
SUFU	51684	MSKCC	GRCh37	10	104269045	104269045	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	202	410	0	ENST00000369902.3:c.302del	p.Asp101AlafsTer20	p.D101Afs*20	ENST00000369902	NM_016169.3	101	gAc/gc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572252	64572252	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	288	296	0	ENST00000337652.1:c.1402G>T	p.Glu468Ter	p.E468*	ENST00000337652	NM_130803.2	468	Gag/Tag																																																																														
PGR	5241	MSKCC	GRCh37	11	100998274	100998275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	58	60	0	ENST00000325455.5:c.1527dup	p.Ala510ArgfsTer64	p.A510Rfs*64	ENST00000325455	NM_001202474.3	509	-/C																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360559	118360559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	152	325	0	ENST00000534358.1:c.4532G>T	p.Gly1511Val	p.G1511V	ENST00000534358	NM_005933.3	1511	gGa/gTa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858625	57858625	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	354	436	0	ENST00000228682.2:c.363C>A	p.Tyr121Ter	p.Y121*	ENST00000228682	NM_005269.2	121	taC/taA																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112418	115112418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	503	419	0	ENST00000257566.3:c.1322C>A	p.Thr441Asn	p.T441N	ENST00000257566	NM_016569.3	441	aCc/aAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423637	88423637	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	85	294	0	ENST00000360948.2:c.2198C>G	p.Pro733Arg	p.P733R	ENST00000360948	NM_001012338.2	733	cCc/cGc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476354	88476354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	305	482	1	ENST00000360948.2:c.1778C>A	p.Thr593Asn	p.T593N	ENST00000360948	NM_001012338.2	593	aCc/aAc																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2093595	2093595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	302	547	0	ENST00000219066.1:c.682G>T	p.Val228Leu	p.V228L	ENST00000219066	NM_002528.5	228	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576849	7576874	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTACCTGAAGGGTGAAATATTCTCCA	GTACCTGAAGGGTGAAATATTCTCCA	TCCT			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	150	518	1	ENST00000269305.4:c.972_993+4delinsAGGA		p.X324_splice	ENST00000269305	NM_001126112.2	324																																																																															
SMAD2	4087	MSKCC	GRCh37	18	45371855	45372032	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTATGATTAAAAAAGGTAAAAGAAATTGTCAAAAGAGTATCATTATTAAAAAGTAATTTTAAAAGGGTTACAAGTTTTAGAATATGAGCATGCAATCATCTACTGATTCCTAAAATTAGCAACAAGAAAAACTAAGCAAGTTGACATGATAGGTTTATGTACATTATTGAATCCATA	CCTATGATTAAAAAAGGTAAAAGAAATTGTCAAAAGAGTATCATTATTAAAAAGTAATTTTAAAAGGGTTACAAGTTTTAGAATATGAGCATGCAATCATCTACTGATTCCTAAAATTAGCAACAAGAAAAACTAAGCAAGTTGACATGATAGGTTTATGTACATTATTGAATCCATA	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	17	243	0	ENST00000262160.6:c.1135+2_1136del		p.X379_splice	ENST00000262160	NM_005901.5	379																																																																															
ALK	238	MSKCC	GRCh37	2	29519840	29519840	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	204	422	0	ENST00000389048.3:c.1731A>T	p.Gln577His	p.Q577H	ENST00000389048	NM_004304.4	577	caA/caT																																																																														
ALK	238	MSKCC	GRCh37	2	29940457	29940457	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	64	239	0	ENST00000389048.3:c.774T>A	p.His258Gln	p.H258Q	ENST00000389048	NM_004304.4	258	caT/caA																																																																														
ERBB4	2066	MSKCC	GRCh37	2	213403171	213403171	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	135	244	0	ENST00000342788.4:c.82+2T>A		p.X28_splice	ENST00000342788	NM_005235.2	28																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484479	57484575	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTAAGCCAACTGTTACCTTTTTATATAACAGAGATCATGGTTTCTTGACATTCACCCCAGTCCCTCTGGAATAACCAGCTGTCCTCCTCCCCACCAG	GTAAGCCAACTGTTACCTTTTTATATAACAGAGATCATGGTTTCTTGACATTCACCCCAGTCCCTCTGGAATAACCAGCTGTCCTCCTCCCCACCAG	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	27	367	0	ENST00000371085.3:c.659+1_660-1del		p.X220_splice	ENST00000371085	NM_000516.4	220																																																																															
EP300	2033	MSKCC	GRCh37	22	41513510	41513510	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	173	413	0	ENST00000263253.7:c.416del	p.Gly139AlafsTer15	p.G139Afs*15	ENST00000263253	NM_001429.3	138	atG/at																																																																														
GATA2	2624	MSKCC	GRCh37	3	128199923	128199923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	180	407	0	ENST00000341105.2:c.1382C>A	p.Pro461His	p.P461H	ENST00000341105	NM_032638.4	461	cCc/cAc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202797	128202797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	248	501	0	ENST00000341105.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000341105	NM_032638.4	308	cGg/cAg																																																																														
TET2	54790	MSKCC	GRCh37	4	106196877	106196877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	78	238	0	ENST00000380013.4:c.5210C>T	p.Thr1737Ile	p.T1737I	ENST00000380013	NM_001127208.2	1737	aCc/aTc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31483684	31483684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	27	136	0	ENST00000344624.3:c.2048C>T	p.Pro683Leu	p.P683L	ENST00000344624		683	cCa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112177725	112177725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	37	244	0	ENST00000257430.4:c.6434G>C	p.Gly2145Ala	p.G2145A	ENST00000257430	NM_000038.5	2145	gGa/gCa																																																																														
E2F3	1871	MSKCC	GRCh37	6	20483034	20483034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	105	267	0	ENST00000346618.3:c.767G>A	p.Cys256Tyr	p.C256Y	ENST00000346618	NM_001949.4	256	tGt/tAt																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197445	26197445	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	92	249	0	ENST00000356476.2:c.34A>T	p.Thr12Ser	p.T12S	ENST00000356476		12	Acg/Tcg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148529772	148529772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	81	269	0	ENST00000320356.2:c.317C>T	p.Ser106Leu	p.S106L	ENST00000320356	NM_004456.4	106	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860713	151860713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	184	426	0	ENST00000262189.6:c.9949A>T	p.Thr3317Ser	p.T3317S	ENST00000262189	NM_170606.2	3317	Aca/Tca																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046368	69046368	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	103	420	0	ENST00000288368.4:c.3841C>G	p.Gln1281Glu	p.Q1281E	ENST00000288368	NM_024870.2	1281	Cag/Gag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5080579	5080579	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	26	291	0	ENST00000381652.3:c.2330G>A	p.Trp777Ter	p.W777*	ENST00000381652	NM_004972.3	777	tGg/tAg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53247149	53247149	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	112	267	0	ENST00000375401.3:c.352-1G>T		p.X118_splice	ENST00000375401	NM_004187.3	118																																																																															
MED12	9968	MSKCC	GRCh37	X	70351955	70351955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	227	479	1	ENST00000374080.3:c.4152G>T	p.Lys1384Asn	p.K1384N	ENST00000374080		1384	aaG/aaT																																																																														
BTK	695	MSKCC	GRCh37	X	100612517	100612517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	145	434	0	ENST00000308731.7:c.1157C>A	p.Ser386Tyr	p.S386Y	ENST00000308731	NM_000061.2	386	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	351	524	1	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	152	345	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	237	566	0	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445001	49445027	+	inframe_deletion	In_Frame_Del	DEL	GGCTCCTCAGGCACAGGAGACAGGTGC	GGCTCCTCAGGCACAGGAGACAGGTGC	-			P-0035227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	104	415	0	ENST00000301067.7:c.2439_2465del	p.His814_Pro822del	p.H814_P822del	ENST00000301067	NM_003482.3	813	ccGCACCTGTCTCCTGTGCCTGAGGAGCCa/cca																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376076	225376076	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	165	397	0	ENST00000264414.4:c.878C>G	p.Thr293Arg	p.T293R	ENST00000264414	NM_003590.4	293	aCa/aGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	39	123	0				ENST00000310581	NM_198253.2																																																																																
EZH2	2146	MSKCC	GRCh37	7	148506210	148506210	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	43	437	0	ENST00000320356.2:c.2148del	p.Phe716LeufsTer24	p.F716Lfs*24	ENST00000320356	NM_004456.4	716	ttT/tt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212460	36212484	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGCAGCCCCTGCAGGCCTTGCAA	ACTGCAGCCCCTGCAGGCCTTGCAA	-			P-0035228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	78	611	0	ENST00000222270.7:c.2213_2237del	p.Leu738ProfsTer43	p.L738Pfs*43	ENST00000222270	NM_014727.1	737	ctACTGCAGCCCCTGCAGGCCTTGCAA/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	52	314	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	70	552	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	44	331	1	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93953233	93953233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	58	459	0	ENST00000369303.4:c.2908C>A	p.Leu970Met	p.L970M	ENST00000369303	NM_004440.3	970	Ctg/Atg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27102066	27102066	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	49	465	0	ENST00000324856.7:c.4994-2A>T		p.X1665_splice	ENST00000324856	NM_006015.4	1665																																																																															
MYCL	4610	MSKCC	GRCh37	1	40363564	40363564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	65	550	0	ENST00000397332.2:c.665G>T	p.Arg222Leu	p.R222L	ENST00000397332	NM_001033082.2	222	cGa/cTa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72400971	72400971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	32	264	0	ENST00000357731.5:c.200C>T	p.Ser67Leu	p.S67L	ENST00000357731	NM_173808.2	67	tCa/tTa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910588	32910588	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	42	347	0	ENST00000380152.3:c.2096A>T	p.Gln699Leu	p.Q699L	ENST00000380152		699	cAg/cTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48937089	48937089	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	29	189	0	ENST00000267163.4:c.857A>T	p.Asp286Val	p.D286V	ENST00000267163	NM_000321.2	286	gAt/gTt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95578585	95578585	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	37	248	0	ENST00000343455.3:c.2041-1G>T		p.X681_splice	ENST00000343455	NM_177438.2	681																																																																															
MAP2K1	5604	MSKCC	GRCh37	15	66727421	66727421	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	29	354	0	ENST00000307102.5:c.137A>G	p.Gln46Arg	p.Q46R	ENST00000307102	NM_002755.3	46	cAg/cGg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593533	48593533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	32	207	1	ENST00000342988.3:c.1284G>T	p.Lys428Asn	p.K428N	ENST00000342988	NM_005359.5	428	aaG/aaT																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273159	198273159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	83	582	0	ENST00000335508.6:c.1051C>T	p.Pro351Ser	p.P351S	ENST00000335508	NM_012433.2	351	Cca/Tca																																																																														
TOP1	7150	MSKCC	GRCh37	20	39704928	39704928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	12	132	0	ENST00000361337.2:c.273G>C	p.Glu91Asp	p.E91D	ENST00000361337	NM_003286.2	91	gaG/gaC																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30729941	30729941	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	40	267	0	ENST00000359013.4:c.1537A>T	p.Lys513Ter	p.K513*	ENST00000359013	NM_001024847.2	513	Aag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468376	89468376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	22	178	0	ENST00000336596.2:c.1910G>A	p.Ser637Asn	p.S637N	ENST00000336596	NM_005233.5	637	aGt/aAt																																																																														
TP63	8626	MSKCC	GRCh37	3	189526130	189526130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	46	538	0	ENST00000264731.3:c.394A>C	p.Ser132Arg	p.S132R	ENST00000264731	NM_003722.4	132	Agt/Cgt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522464	187522464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	69	619	0	ENST00000441802.2:c.11599G>T	p.Val3867Phe	p.V3867F	ENST00000441802	NM_005245.3	3867	Gtt/Ttt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524165	187524165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	32	364	0	ENST00000441802.2:c.11374C>A	p.His3792Asn	p.H3792N	ENST00000441802	NM_005245.3	3792	Cat/Aat																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155713	56155713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	34	273	0	ENST00000399503.3:c.805G>T	p.Val269Leu	p.V269L	ENST00000399503	NM_005921.1	269	Gta/Tta																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637957	176637957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	57	538	0	ENST00000439151.2:c.2557G>C	p.Glu853Gln	p.E853Q	ENST00000439151	NM_022455.4	853	Gaa/Caa																																																																														
HIST1H2BD	3017	MSKCC	GRCh37	6	26158628	26158629	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	21	210	0	ENST00000289316.2:c.231_232delinsTT	p.Glu77_Ala78delinsAspSer	p.E77_A78delinsDS	ENST00000289316	NM_138720.2	77	gaGGct/gaTTct																																																																														
MET	4233	MSKCC	GRCh37	7	116395465	116395465	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	114	479	0	ENST00000397752.3:c.1758G>C	p.Trp586Cys	p.W586C	ENST00000397752	NM_000245.2	586	tgG/tgC																																																																														
PREX2	80243	MSKCC	GRCh37	8	68989678	68989678	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	60	588	0	ENST00000288368.4:c.1616T>A	p.Leu539His	p.L539H	ENST00000288368	NM_024870.2	539	cTc/cAc																																																																														
SH2D1A	4068	MSKCC	GRCh37	X	123504102	123504102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	63	223	0	ENST00000371139.4:c.278G>T	p.Gly93Val	p.G93V	ENST00000371139	NM_001114937.2	93	gGc/gTc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438164	110438164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	39	287	0	ENST00000375856.3:c.237G>T	p.Glu79Asp	p.E79D	ENST00000375856	NM_003749.2	79	gaG/gaT																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438159	110438159	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	37	322	0	ENST00000375856.3:c.242del	p.Lys81SerfsTer12	p.K81Sfs*12	ENST00000375856	NM_003749.2	81	aAg/ag																																																																														
TAP2	6891	MSKCC	GRCh37	6	32802930	32802932	+	splice_donor_variant,coding_sequence_variant	Splice_Site	ONP	CCT	CCT	ACA			P-0035240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	32	319	0	ENST00000374899.4:c.944_945+1delinsTGT		p.X315_splice	ENST00000374899	NM_018833.2	315																																																																															
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	382	567	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																														
KIT	3815	MSKCC	GRCh37	4	55593605	55593610	+	inframe_deletion	In_Frame_Del	DEL	GAAGGT	GAAGGT	-			P-0035271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	88	306	0	ENST00000288135.5:c.1671_1676del	p.Trp557_Val559delinsCys	p.W557_V559delinsC	ENST00000288135	NM_000222.2	557	tgGAAGGTt/tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	9	293	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438532	49438532	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	204	430	3	ENST00000301067.7:c.4958del	p.Gly1653ValfsTer69	p.G1653Vfs*69	ENST00000301067	NM_003482.3	1653	gGt/gt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118673	115118692	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGAAACTTACAAATCCATG	ATGAAACTTACAAATCCATG	-			P-0035274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	142	325	0	ENST00000257566.3:c.649_657+11del		p.X217_splice	ENST00000257566	NM_016569.3	217																																																																															
FLT3	2322	MSKCC	GRCh37	13	28608129	28608129	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0035274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	81	378	0	ENST00000241453.7:c.1838-1G>C		p.X613_splice	ENST00000241453	NM_004119.2	613																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31449456	31449456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	138	393	1	ENST00000344624.3:c.2753C>T	p.Ser918Phe	p.S918F	ENST00000344624		918	tCt/tTt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786457	135786457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	150	350	3	ENST00000298552.3:c.1073C>A	p.Pro358His	p.P358H	ENST00000298552	NM_001162426.1	358	cCt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	162	448	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0035275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	121	336	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0035275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	405	314	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662637	227662637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	80	368	0	ENST00000305123.5:c.818C>T	p.Ser273Leu	p.S273L	ENST00000305123	NM_005544.2	273	tCg/tTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405231	139405231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	52	438	0	ENST00000277541.6:c.2614G>A	p.Glu872Lys	p.E872K	ENST00000277541	NM_017617.3	872	Gag/Aag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	419065	419065	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	52	345	0	ENST00000399788.2:c.3282del	p.Glu1095AsnfsTer2	p.E1095Nfs*2	ENST00000399788	NM_001042603.1	1094	aaA/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	133	483	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	149	675	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	183	722	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94180459	94180459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	164	692	0	ENST00000323929.3:c.1709G>A	p.Arg570Lys	p.R570K	ENST00000323929	NM_005591.3	570	aGa/aAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29687583	29687583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	93	627	0	ENST00000358273.4:c.8239G>A	p.Asp2747Asn	p.D2747N	ENST00000358273	NM_001042492.2	2747	Gat/Aat																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546725	9546725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	72	345	1	ENST00000353224.5:c.1297C>T	p.Arg433Trp	p.R433W	ENST00000353224	NM_177990.2	433	Cgg/Tgg																																																																														
RAC2	5880	MSKCC	GRCh37	22	37622769	37622769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	205	813	0	ENST00000249071.6:c.523G>T	p.Ala175Ser	p.A175S	ENST00000249071	NM_002872.4	175	Gcc/Tcc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9781645	9781645	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	68	680	0	ENST00000377346.4:c.1955G>T	p.Arg652Leu	p.R652L	ENST00000377346	NM_005026.3	652	cGc/cTc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937868	36937868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	173	973	0	ENST00000361632.4:c.968C>T	p.Pro323Leu	p.P323L	ENST00000361632		323	cCc/cTc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100792	8100792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	59	611	0	ENST00000346208.3:c.766C>T	p.Arg256Trp	p.R256W	ENST00000346208		256	Cgg/Tgg																																																																														
WT1	7490	MSKCC	GRCh37	11	32449596	32449596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	93	692	0	ENST00000332351.3:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000332351	NM_024426.4	260	Cag/Tag																																																																														
AXIN1	8312	MSKCC	GRCh37	16	359999	359999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	198	766	1	ENST00000262320.3:c.1090G>T	p.Gly364Trp	p.G364W	ENST00000262320	NM_003502.3	364	Ggg/Tgg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223335	2223335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	136	736	0	ENST00000326181.6:c.947G>T	p.Arg316Leu	p.R316L	ENST00000326181	NM_032271.2	316	cGc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845809	72845809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	57	592	0	ENST00000268489.5:c.3658G>C	p.Glu1220Gln	p.E1220Q	ENST00000268489	NM_006885.3	1220	Gag/Cag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214701	36214701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	56	698	0	ENST00000222270.7:c.3127C>G	p.Pro1043Ala	p.P1043A	ENST00000222270	NM_014727.1	1043	Cca/Gca																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505431	25505431	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	112	650	1	ENST00000264709.3:c.327delG	p.Gln110ArgfsTer52	p.Q110Rfs*52	ENST00000264709	NM_175629.2	109	ggG/gg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30648460	30648460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	52	439	0	ENST00000359013.4:c.85C>G	p.Gln29Glu	p.Q29E	ENST00000359013	NM_001024847.2	29	Cag/Gag																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1957850	1957850	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	163	674	0	ENST00000382891.5:c.2816A>T	p.Tyr939Phe	p.Y939F	ENST00000382891	NM_133335.3	939	tAc/tTc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151896469	151896469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	42	430	0	ENST00000262189.6:c.4168G>C	p.Gly1390Arg	p.G1390R	ENST00000262189	NM_170606.2	1390	Gga/Cga																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346399	152346399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	86	615	0	ENST00000359321.1:c.171G>T	p.Met57Ile	p.M57I	ENST00000359321	NM_005431.1	57	atG/atT																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207488	29207488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	70	337	0	ENST00000240100.2:c.308C>T	p.Ser103Leu	p.S103L	ENST00000240100	NM_001394.6	103	tCg/tTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574237	95574242	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTAT	CAGTAT	A			P-0035278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	63	333	0	ENST00000343455.3:c.2625_2630delinsT	p.Tyr876CysfsTer5	p.Y876Cfs*5	ENST00000343455	NM_177438.2	875	gcATACTGt/gcTt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64575470	64575470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	213	608	0	ENST00000337652.1:c.562T>A	p.Trp188Arg	p.W188R	ENST00000337652	NM_130803.2	188	Tgg/Agg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164937	47164937	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	76	297	0	ENST00000409792.3:c.1189G>T	p.Glu397Ter	p.E397*	ENST00000409792	NM_014159.6	397	Gaa/Taa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288369	33288369	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0035279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	141	361	0	ENST00000374542.5:c.1040-1G>A		p.X347_splice	ENST00000374542	NM_001141970.1	347																																																																															
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0035280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	213	630	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																														
CUL3	8452	MSKCC	GRCh37	2	225360568	225360568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	43	162	0	ENST00000264414.4:c.1823G>C	p.Arg608Thr	p.R608T	ENST00000264414	NM_003590.4	608	aGa/aCa																																																																														
WT1	7490	MSKCC	GRCh37	11	32456342	32456342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	108	1031	2	ENST00000332351.3:c.550C>A	p.Pro184Thr	p.P184T	ENST00000332351	NM_024426.4	184	Ccg/Acg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004226	150004226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	57	257	1	ENST00000253339.5:c.1999G>A	p.Glu667Lys	p.E667K	ENST00000253339		667	Gaa/Aaa																																																																														
MET	4233	MSKCC	GRCh37	7	116411682	116411682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	200	752	0	ENST00000397752.3:c.2861G>A	p.Trp954Ter	p.W954*	ENST00000397752	NM_000245.2	954	tGg/tAg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784473	9784473	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	115	439	0	ENST00000377346.4:c.2858T>G	p.Phe953Cys	p.F953C	ENST00000377346	NM_005026.3	953	tTt/tGt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16263838	16263838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183490080		P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	197	648	0	ENST00000375759.3:c.10207C>T	p.Arg3403Cys	p.R3403C	ENST00000375759	NM_015001.2	3403	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	412	591	1	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39322629	39322629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	185	565	0	ENST00000373001.3:c.363G>T	p.Met121Ile	p.M121I	ENST00000373001	NM_022157.3	121	atG/atT																																																																														
FH	2271	MSKCC	GRCh37	1	241675433	241675433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	81	306	0	ENST00000366560.3:c.389G>A	p.Gly130Asp	p.G130D	ENST00000366560	NM_000143.3	130	gGt/gAt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852511	63852511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	95	489	0	ENST00000279873.7:c.3289G>A	p.Ala1097Thr	p.A1097T	ENST00000279873	NM_032199.2	1097	Gct/Act																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685280	89685280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	62	270	0	ENST00000371953.3:c.175T>C	p.Ser59Pro	p.S59P	ENST00000371953	NM_000314.4	59	Tca/Cca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	181	541	0	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711887	89711887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	171	513	0	ENST00000371953.3:c.505C>T	p.Pro169Ser	p.P169S	ENST00000371953	NM_000314.4	169	Ccc/Tcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720857	89720857	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	140	308	0	ENST00000371953.3:c.1008C>A	p.Tyr336Ter	p.Y336*	ENST00000371953	NM_000314.4	336	taC/taA																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112764538	112764538	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	107	316	0	ENST00000369452.4:c.1147A>G	p.Lys383Glu	p.K383E	ENST00000369452	NM_007373.3	383	Aag/Gag																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251992	8251992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	261	806	0	ENST00000335790.3:c.85C>T	p.Arg29Cys	p.R29C	ENST00000335790	NM_002315.2	29	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108141989	108141989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	144	422	0	ENST00000278616.4:c.2933C>A	p.Ser978Tyr	p.S978Y	ENST00000278616	NM_000051.3	978	tCt/tAt																																																																														
ATM	472	MSKCC	GRCh37	11	108175528	108175528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	163	435	1	ENST00000278616.4:c.5623C>T	p.Arg1875Ter	p.R1875*	ENST00000278616	NM_000051.3	1875	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	493277	493277	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	164	444	0	ENST00000399788.2:c.286A>C	p.Lys96Gln	p.K96Q	ENST00000399788	NM_001042603.1	96	Aaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	249	566	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230627	46230627	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	205	521	0	ENST00000334344.6:c.876T>G	p.Ile292Met	p.I292M	ENST00000334344	NM_152641.2	292	atT/atG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431915	49431915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1337	239	816	0	ENST00000301067.7:c.9224C>T	p.Ser3075Leu	p.S3075L	ENST00000301067	NM_003482.3	3075	tCg/tTg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112919983	112919983	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1392	80	599	1	ENST00000351677.2:c.1198G>T	p.Glu400Ter	p.E400*	ENST00000351677	NM_002834.3	400	Gaa/Taa																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536921	120536921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1252	126	691	0	ENST00000229340.5:c.265G>A	p.Asp89Asn	p.D89N	ENST00000229340	NM_006861.6	89	Gac/Aac																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	143	477	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911088	32911088	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	115	353	0	ENST00000380152.3:c.2596G>T	p.Glu866Ter	p.E866*	ENST00000380152		866	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912942	32912942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	129	389	0	ENST00000380152.3:c.4450G>T	p.Asp1484Tyr	p.D1484Y	ENST00000380152		1484	Gac/Tac																																																																														
RB1	5925	MSKCC	GRCh37	13	48953748	48953748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	37	228	0	ENST00000267163.4:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000267163	NM_000321.2	451	Cgc/Tgc																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281275	49281275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200289548		P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1448	287	844	1	ENST00000282018.3:c.322G>A	p.Asp108Asn	p.D108N	ENST00000282018	NM_020377.2	108	Gac/Aac																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281356	49281356	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1804	324	955	0	ENST00000282018.3:c.403G>C	p.Val135Leu	p.V135L	ENST00000282018	NM_020377.2	135	Gtg/Ctg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103527667	103527667	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	56	209	0	ENST00000355739.4:c.2975G>T	p.Arg992Leu	p.R992L	ENST00000355739	NM_000123.3	992	cGa/cTa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557638	95557638	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	197	562	0	ENST00000343455.3:c.5429A>G	p.Asp1810Gly	p.D1810G	ENST00000343455	NM_177438.2	1810	gAt/gGt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590698	95590698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	121	404	0	ENST00000343455.3:c.1211G>T	p.Arg404Ile	p.R404I	ENST00000343455	NM_177438.2	404	aGa/aTa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590864	95590864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	149	413	0	ENST00000343455.3:c.1045G>A	p.Asp349Asn	p.D349N	ENST00000343455	NM_177438.2	349	Gac/Aac																																																																														
DICER1	23405	MSKCC	GRCh37	14	95590989	95590989	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149718671		P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	74	266	0	ENST00000343455.3:c.920G>A	p.Arg307His	p.R307H	ENST00000343455	NM_177438.2	307	cGt/cAt																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023435	33023435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1202	258	712	1	ENST00000300177.4:c.544G>A	p.Asp182Asn	p.D182N	ENST00000300177	NM_001191322.1	182	Gat/Aat																																																																														
MGA	23269	MSKCC	GRCh37	15	42021428	42021428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	198	543	0	ENST00000219905.7:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000219905	NM_001164273.1	1242	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42057230	42057230	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	195	558	2	ENST00000219905.7:c.7891C>T	p.Gln2631Ter	p.Q2631*	ENST00000219905	NM_001164273.1	2631	Caa/Taa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724405	43724405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1344	267	753	0	ENST00000382044.4:c.3662C>T	p.Ser1221Leu	p.S1221L	ENST00000382044	NM_001141980.1	1221	tCg/tTg																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457295	67457295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	222	666	3	ENST00000327367.4:c.269G>A	p.Arg90His	p.R90H	ENST00000327367	NM_005902.3	90	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828297	72828297	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	189	639	0	ENST00000268489.5:c.8284G>T	p.Gly2762Ter	p.G2762*	ENST00000268489	NM_006885.3	2762	Gga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828558	72828558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1610	109	746	0	ENST00000268489.5:c.8023G>A	p.Ala2675Thr	p.A2675T	ENST00000268489	NM_006885.3	2675	Gca/Aca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830958	72830958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	182	540	0	ENST00000268489.5:c.5623G>A	p.Glu1875Lys	p.E1875K	ENST00000268489	NM_006885.3	1875	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831513	72831513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	216	766	0	ENST00000268489.5:c.5068A>G	p.Met1690Val	p.M1690V	ENST00000268489	NM_006885.3	1690	Atg/Gtg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831996	72831996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1204	228	678	0	ENST00000268489.5:c.4585A>G	p.Lys1529Glu	p.K1529E	ENST00000268489	NM_006885.3	1529	Aaa/Gaa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89383370	89383370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1278	215	722	0	ENST00000301030.4:c.58G>A	p.Asp20Asn	p.D20N	ENST00000301030	NM_001256183.1	20	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1442	84	605	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578245	7578245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	233	576	0	ENST00000269305.4:c.604C>T	p.Arg202Cys	p.R202C	ENST00000269305	NM_001126112.2	202	Cgt/Tgt																																																																														
NF1	4763	MSKCC	GRCh37	17	29586128	29586128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	200	493	0	ENST00000358273.4:c.4411A>G	p.Asn1471Asp	p.N1471D	ENST00000358273	NM_001042492.2	1471	Aac/Gac																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	41	418	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492733	56492733	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	253	691	0	ENST00000407977.2:c.206T>G	p.Phe69Cys	p.F69C	ENST00000407977		69	tTt/tGt																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780563	56780563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	129	687	0	ENST00000337432.4:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000337432	NM_058216.2	193	cGa/cAa																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780619	56780619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137947462		P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1226	222	713	0	ENST00000337432.4:c.634C>T	p.Arg212Cys	p.R212C	ENST00000337432	NM_058216.2	212	Cgc/Tgc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39575856	39575856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	108	265	0	ENST00000262039.4:c.789G>T	p.Glu263Asp	p.E263D	ENST00000262039	NM_002647.2	263	gaG/gaT																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619401	1619401	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200307903		P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	52	492	1	ENST00000344749.5:c.1240G>A	p.Asp414Asn	p.D414N	ENST00000344749	NM_001136139.2	414	Gac/Aac																																																																														
INSR	3643	MSKCC	GRCh37	19	7267638	7267638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	293	697	0	ENST00000302850.5:c.370G>A	p.Glu124Lys	p.E124K	ENST00000302850	NM_000208.2	124	Gag/Aag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10250363	10250363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	32	263	0	ENST00000340748.4:c.3889G>A	p.Gly1297Ser	p.G1297S	ENST00000340748		1297	Ggc/Agc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098443	11098443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	112	264	2	ENST00000344626.4:c.961G>A	p.Ala321Thr	p.A321T	ENST00000344626	NM_003072.3	321	Gcc/Acc																																																																														
CCNE1	898	MSKCC	GRCh37	19	30314680	30314680	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141578348		P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	131	472	0	ENST00000262643.3:c.1229C>T	p.Ala410Val	p.A410V	ENST00000262643	NM_001238.2	410	gCg/gTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210808	36210808	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	237	797	0	ENST00000222270.7:c.559G>T	p.Glu187Ter	p.E187*	ENST00000222270	NM_014727.1	187	Gaa/Taa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223761	36223761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1508	182	942	0	ENST00000222270.7:c.6311G>A	p.Arg2104Gln	p.R2104Q	ENST00000222270	NM_014727.1	2104	cGg/cAg																																																																														
AKT2	208	MSKCC	GRCh37	19	40741906	40741906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1420	166	781	2	ENST00000392038.2:c.1066G>A	p.Glu356Lys	p.E356K	ENST00000392038	NM_001626.4	356	Gag/Aag																																																																														
AXL	558	MSKCC	GRCh37	19	41762374	41762374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	139	485	0	ENST00000301178.4:c.2054C>T	p.Ser685Phe	p.S685F	ENST00000301178	NM_021913.4	685	tCc/tTc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464450	25464450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	52	455	0	ENST00000264709.3:c.2063G>A	p.Arg688His	p.R688H	ENST00000264709	NM_175629.2	688	cGc/cAc																																																																														
ALK	238	MSKCC	GRCh37	2	29917803	29917803	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	219	644	0	ENST00000389048.3:c.865T>C	p.Ser289Pro	p.S289P	ENST00000389048	NM_004304.4	289	Tcc/Ccc																																																																														
ALK	238	MSKCC	GRCh37	2	29940456	29940456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	100	346	0	ENST00000389048.3:c.775C>T	p.Arg259Cys	p.R259C	ENST00000389048	NM_004304.4	259	Cgc/Tgc																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	21	487	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038122	128038122	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	184	498	0	ENST00000285398.2:c.1428A>C	p.Lys476Asn	p.K476N	ENST00000285398	NM_000122.1	476	aaA/aaC																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098787	178098787	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1543	120	695	0	ENST00000397062.3:c.258T>G	p.Ile86Met	p.I86M	ENST00000397062	NM_006164.4	86	atT/atG																																																																														
PMS1	5378	MSKCC	GRCh37	2	190670397	190670397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	59	465	0	ENST00000441310.2:c.335C>T	p.Thr112Met	p.T112M	ENST00000441310	NM_000534.4	112	aCg/aTg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719120	190719120	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	70	370	0	ENST00000441310.2:c.1122A>C	p.Glu374Asp	p.E374D	ENST00000441310	NM_000534.4	374	gaA/gaC																																																																														
CASP8	841	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	78	465	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																														
BARD1	580	MSKCC	GRCh37	2	215593483	215593483	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139785364		P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	110	327	0	ENST00000260947.4:c.2251C>T	p.Arg751Trp	p.R751W	ENST00000260947	NM_000465.2	751	Cgg/Tgg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39728847	39728847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	41	311	1	ENST00000361337.2:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000361337	NM_003286.2	376	cGa/cAa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46276102	46276102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	155	487	0	ENST00000371998.3:c.3538G>A	p.Gly1180Ser	p.G1180S	ENST00000371998		1180	Ggc/Agc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57485442	57485442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	144	365	0	ENST00000371085.3:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000371085	NM_000516.4	342	Cga/Tga																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171607	36171607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	102	314	0	ENST00000300305.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000300305		320	Cga/Tga																																																																														
NF2	4771	MSKCC	GRCh37	22	30064380	30064380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	74	419	0	ENST00000338641.4:c.944C>A	p.Ser315Tyr	p.S315Y	ENST00000338641	NM_000268.3	315	tCt/tAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41551082	41551082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	139	604	0	ENST00000263253.7:c.3226C>T	p.Arg1076Cys	p.R1076C	ENST00000263253	NM_001429.3	1076	Cgt/Tgt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37083778	37083778	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	183	534	0	ENST00000231790.2:c.1687A>C	p.Ile563Leu	p.I563L	ENST00000231790	NM_000249.3	563	Ata/Cta																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165023	47165023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	145	390	0	ENST00000409792.3:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000409792	NM_014159.6	368	cGa/cAa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52613108	52613108	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	144	485	0	ENST00000394830.3:c.3420C>A	p.Phe1140Leu	p.F1140L	ENST00000394830	NM_018313.4	1140	ttC/ttA																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259601	89259601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	148	399	0	ENST00000336596.2:c.745G>A	p.Glu249Lys	p.E249K	ENST00000336596	NM_005233.5	249	Gaa/Aaa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374347	138374347	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	164	498	0	ENST00000289153.2:c.3097A>G	p.Ser1033Gly	p.S1033G	ENST00000289153	NM_006219.2	1033	Agt/Ggt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	198	623	2	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	114	365	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807361	1807361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	131	447	0	ENST00000260795.2:c.1610A>G	p.Asn537Ser	p.N537S	ENST00000260795		537	aAc/aGc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1920265	1920265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	213	641	0	ENST00000382891.5:c.1325A>C	p.Lys442Thr	p.K442T	ENST00000382891	NM_133335.3	442	aAg/aCg																																																																														
KDR	3791	MSKCC	GRCh37	4	55980345	55980345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	185	528	0	ENST00000263923.4:c.746G>T	p.Arg249Ile	p.R249I	ENST00000263923	NM_002253.2	249	aGa/aTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286173	66286173	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	103	364	0	ENST00000273854.3:c.1513A>C	p.Lys505Gln	p.K505Q	ENST00000273854	NM_004439.5	505	Aag/Cag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	82	266	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332915	153332915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200698994		P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	153	455	0	ENST00000281708.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000281708	NM_033632.3	14	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522574	187522574	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	160	414	0	ENST00000441802.2:c.11489C>A	p.Ser3830Ter	p.S3830*	ENST00000441802	NM_005245.3	3830	tCa/tAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535369	187535369	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	175	554	0	ENST00000441802.2:c.9205A>C	p.Lys3069Gln	p.K3069Q	ENST00000441802	NM_005245.3	3069	Aaa/Caa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187554954	187554954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	129	402	0	ENST00000441802.2:c.4207G>A	p.Asp1403Asn	p.D1403N	ENST00000441802	NM_005245.3	1403	Gat/Aat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950099	38950099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	64	512	0	ENST00000357387.3:c.3851C>T	p.Ser1284Leu	p.S1284L	ENST00000357387	NM_152756.3	1284	tCg/tTg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38958874	38958874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	90	298	0	ENST00000357387.3:c.2238C>A	p.Phe746Leu	p.F746L	ENST00000357387	NM_152756.3	746	ttC/ttA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38982000	38982000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	166	482	0	ENST00000357387.3:c.722G>A	p.Arg241Gln	p.R241Q	ENST00000357387	NM_152756.3	241	cGa/cAa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189455	56189455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	84	595	0	ENST00000399503.3:c.4487G>A	p.Arg1496Lys	p.R1496K	ENST00000399503	NM_005921.1	1496	aGa/aAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86629109	86629109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	78	334	0	ENST00000274376.6:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000274376	NM_002890.2	285	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672759	86672759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	109	371	0	ENST00000274376.6:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000274376	NM_002890.2	749	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86686620	86686620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	70	227	0	ENST00000274376.6:c.3064G>A	p.Val1022Ile	p.V1022I	ENST00000274376	NM_002890.2	1022	Gta/Ata																																																																														
APC	324	MSKCC	GRCh37	5	112175640	112175640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	111	315	0	ENST00000257430.4:c.4349G>A	p.Arg1450Gln	p.R1450Q	ENST00000257430	NM_000038.5	1450	cGa/cAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696697	176696697	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	131	373	0	ENST00000439151.2:c.5398G>T	p.Gly1800Ter	p.G1800*	ENST00000439151	NM_022455.4	1800	Gga/Tga																																																																														
NSD1	64324	MSKCC	GRCh37	5	176720928	176720928	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	80	506	0	ENST00000439151.2:c.6559C>T	p.Arg2187Ter	p.R2187*	ENST00000439151	NM_022455.4	2187	Cga/Tga																																																																														
E2F3	1871	MSKCC	GRCh37	6	20483077	20483077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	103	307	0	ENST00000346618.3:c.810G>T	p.Glu270Asp	p.E270D	ENST00000346618	NM_001949.4	270	gaG/gaT																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803059	32803059	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs61736923		P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	208	670	1	ENST00000374899.4:c.817C>G	p.Arg273Gly	p.R273G	ENST00000374899	NM_018833.2	273	Cga/Gga																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287809	33287809	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150463674		P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1882	363	1008	0	ENST00000374542.5:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000374542	NM_001141970.1	482	Gaa/Aaa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287941	33287941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	64	614	0	ENST00000374542.5:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000374542	NM_001141970.1	438	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662700	117662700	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	166	464	0	ENST00000368508.3:c.4765G>T	p.Glu1589Ter	p.E1589*	ENST00000368508	NM_002944.2	1589	Gaa/Taa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686826	117686826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	109	300	0	ENST00000368508.3:c.2891G>T	p.Ser964Ile	p.S964I	ENST00000368508	NM_002944.2	964	aGt/aTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715350	117715350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	61	281	0	ENST00000368508.3:c.1139G>T	p.Arg380Ile	p.R380I	ENST00000368508	NM_002944.2	380	aGa/aTa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001305	150001305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	219	627	1	ENST00000253339.5:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000253339		767	Cgt/Tgt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150023019	150023019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	245	731	0	ENST00000253339.5:c.244C>T	p.Arg82Ter	p.R82*	ENST00000253339		82	Cga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2954975	2954975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	228	694	0	ENST00000396946.4:c.2735G>A	p.Arg912Gln	p.R912Q	ENST00000396946	NM_032415.4	912	cGg/cAg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6038780	6038780	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1552	103	681	0	ENST00000265849.7:c.664A>T	p.Ser222Cys	p.S222C	ENST00000265849	NM_000535.5	222	Agc/Tgc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509660	106509660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	137	504	0	ENST00000359195.3:c.1654C>T	p.Arg552Cys	p.R552C	ENST00000359195	NM_002649.2	552	Cgc/Tgc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520103	106520103	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	66	254	0	ENST00000359195.3:c.2531T>G	p.Ile844Ser	p.I844S	ENST00000359195	NM_002649.2	844	aTt/aGt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285606	38285606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	102	421	0	ENST00000425967.3:c.547G>A	p.Ala183Thr	p.A183T	ENST00000425967	NM_001174067.1	183	Gct/Act																																																																														
LYN	4067	MSKCC	GRCh37	8	56864630	56864630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	218	621	0	ENST00000519728.1:c.593G>A	p.Arg198Gln	p.R198Q	ENST00000519728	NM_002350.3	198	cGa/cAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129915	69129915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	91	341	0	ENST00000288368.4:c.4669C>T	p.Arg1557Cys	p.R1557C	ENST00000288368	NM_024870.2	1557	Cgt/Tgt																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430559	80430559	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	174	513	0	ENST00000286548.4:c.449A>C	p.Glu150Ala	p.E150A	ENST00000286548	NM_002072.3	150	gAa/gCa																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80430633	80430633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	95	295	0	ENST00000286548.4:c.375G>T	p.Glu125Asp	p.E125D	ENST00000286548	NM_002072.3	125	gaG/gaT																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80537246	80537246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	227	641	0	ENST00000286548.4:c.152G>A	p.Gly51Asp	p.G51D	ENST00000286548	NM_002072.3	51	gGc/gAc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135798780	135798780	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	102	281	0	ENST00000298552.3:c.463T>G	p.Phe155Val	p.F155V	ENST00000298552	NM_001162426.1	155	Ttt/Gtt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139413142	139413142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1492	323	976	0	ENST00000277541.6:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000277541	NM_017617.3	334	Gag/Aag																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15833986	15833986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1319	267	621	2	ENST00000307771.7:c.744G>T	p.Lys248Asn	p.K248N	ENST00000307771	NM_005089.3	248	aaG/aaT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030658	47030658	+	intron_variant	Intron	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	65	661	0	ENST00000329236.7:c.201+1761G>A		p.*67*	ENST00000329236	NM_001204466.1	67																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412109	63412109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1815	106	1027	1	ENST00000330258.3:c.1058G>A	p.Arg353Gln	p.R353Q	ENST00000330258	NM_152424.3	353	cGa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76888725	76888725	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	171	609	0	ENST00000373344.5:c.5104G>T	p.Glu1702Ter	p.E1702*	ENST00000373344	NM_000489.3	1702	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76907620	76907620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	184	563	0	ENST00000373344.5:c.4541G>A	p.Arg1514Gln	p.R1514Q	ENST00000373344	NM_000489.3	1514	cGa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937351	76937351	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	107	629	0	ENST00000373344.5:c.3397G>T	p.Glu1133Ter	p.E1133*	ENST00000373344	NM_000489.3	1133	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76937377	76937377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	162	623	0	ENST00000373344.5:c.3371C>A	p.Ser1124Tyr	p.S1124Y	ENST00000373344	NM_000489.3	1124	tCt/tAt																																																																														
XIAP	331	MSKCC	GRCh37	X	123020002	123020002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	198	705	2	ENST00000355640.3:c.490G>A	p.Glu164Lys	p.E164K	ENST00000355640		164	Gaa/Aaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123159747	123159747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	78	345	0	ENST00000218089.9:c.102C>A	p.Asn34Lys	p.N34K	ENST00000218089	NM_001042749.1	34	aaC/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0035283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	361	889	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PGR	5241	MSKCC	GRCh37	11	100998222	100998222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	158	282	0	ENST00000325455.5:c.1580C>A	p.Ala527Asp	p.A527D	ENST00000325455	NM_001202474.3	527	gCc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	564	649	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	108	296	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	326	201	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	326	201	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	326	201	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0035285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	63	215	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653814	89653814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	191	369	0	ENST00000371953.3:c.112C>T	p.Pro38Ser	p.P38S	ENST00000371953	NM_000314.4	38	Cct/Tct																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	131	279	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247280	153247280	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	159	316	0	ENST00000281708.4:c.1522C>T	p.Gln508Ter	p.Q508*	ENST00000281708	NM_033632.3	508	Caa/Taa																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607817	46607817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	353	747	0	ENST00000263734.3:c.2006C>T	p.Pro669Leu	p.P669L	ENST00000263734	NM_001430.4	669	cCc/cTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	32	594	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434768	49434768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	37	574	0	ENST00000301067.7:c.6785G>T	p.Gly2262Val	p.G2262V	ENST00000301067	NM_003482.3	2262	gGg/gTg																																																																														
MET	4233	MSKCC	GRCh37	7	116411865	116411901	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CCGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTTTAA	CCGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTTTAA	-			P-0035293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	71	816	0	ENST00000397752.3:c.2888-38_2888-2del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0035293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	27	630	1	ENST00000397752.3:c.3028+3A>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	525	418	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	277	585	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
RIT1	6016	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	197	397	0	ENST00000368323.3:c.270G>C	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atC																																																																														
TERT	7015	MSKCC	GRCh37	5	1260674	1260674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	84	477	1	ENST00000310581.5:c.2885G>A	p.Arg962His	p.R962H	ENST00000310581	NM_198253.2	962	cGc/cAc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464947	120464947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	195	398	0	ENST00000256646.2:c.5125C>G	p.Leu1709Val	p.L1709V	ENST00000256646	NM_024408.3	1709	Ctc/Gtc																																																																														
WT1	7490	MSKCC	GRCh37	11	32449599	32449599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	200	507	0	ENST00000332351.3:c.775C>A	p.Gln259Lys	p.Q259K	ENST00000332351	NM_024426.4	259	Cag/Aag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18747471	18747471	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	208	307	0	ENST00000266497.5:c.3934del	p.Thr1312GlnfsTer10	p.T1312Qfs*10	ENST00000266497		1311	cAa/ca																																																																														
MGA	23269	MSKCC	GRCh37	15	42005607	42005607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	173	356	0	ENST00000219905.7:c.3343G>T	p.Gly1115Ter	p.G1115*	ENST00000219905	NM_001164273.1	1115	Gga/Tga																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476343	88476343	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	232	492	0	ENST00000360948.2:c.1789C>G	p.His597Asp	p.H597D	ENST00000360948	NM_001012338.2	597	Cat/Gat																																																																														
ERF	2077	MSKCC	GRCh37	19	42753089	42753089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	230	572	0	ENST00000222329.4:c.1175G>T	p.Gly392Val	p.G392V	ENST00000222329	NM_006494.2	392	gGg/gTg																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719221	61719221	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	179	342	0	ENST00000401558.2:c.1836T>A	p.Asp612Glu	p.D612E	ENST00000401558	NM_003400.3	612	gaT/gaA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155021	55155021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	147	377	0	ENST00000257290.5:c.2730G>T	p.Lys910Asn	p.K910N	ENST00000257290	NM_006206.4	910	aaG/aaT																																																																														
KIT	3815	MSKCC	GRCh37	4	55595501	55595501	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	65	326	0	ENST00000288135.5:c.1991G>T	p.Gly664Val	p.G664V	ENST00000288135	NM_000222.2	664	gGg/gTg																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876106	35876106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	256	377	0	ENST00000303115.3:c.898C>A	p.Pro300Thr	p.P300T	ENST00000303115	NM_002185.3	300	Cct/Act																																																																														
MSH3	4437	MSKCC	GRCh37	5	80071569	80071569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	141	294	0	ENST00000265081.6:c.2310G>T	p.Lys770Asn	p.K770N	ENST00000265081	NM_002439.4	770	aaG/aaT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376678	8376678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	513	373	0	ENST00000356435.5:c.4435C>A	p.Leu1479Ile	p.L1479I	ENST00000356435		1479	Ctc/Atc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465658	8465659	+	stop_gained	Nonsense_Mutation	DNP	AG	AG	TT			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	365	378	0	ENST00000356435.5:c.3521_3522delinsAA	p.Ser1174Ter	p.S1174*	ENST00000356435		1174	tCT/tAA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8733793	8733794	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	77	386	0	ENST00000356435.5:c.50_51delinsTT	p.Arg17Leu	p.R17L	ENST00000356435		17	cGC/cTT																																																																														
TEK	7010	MSKCC	GRCh37	9	27203076	27203076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	260	419	0	ENST00000380036.4:c.2168C>A	p.Pro723Gln	p.P723Q	ENST00000380036	NM_000459.3	723	cCa/cAa																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1314936	1314936	+	downstream_gene_variant	3'Flank	SNP	A	A	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	238	431	0				ENST00000381566																																																																																	
GATA1	2623	MSKCC	GRCh37	X	48652345	48652345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	310	811	0	ENST00000376670.3:c.1016G>T	p.Gly339Val	p.G339V	ENST00000376670	NM_002049.3	339	gGg/gTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437782	52437782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0035314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	38	604	0	ENST00000460680.1:c.1379C>G	p.Ser460Ter	p.S460*	ENST00000460680	NM_004656.3	460	tCa/tGa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183835	10183836	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	G			P-0035314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	123	498	0	ENST00000256474.2:c.304_305delinsG	p.Pro102GlyfsTer57	p.P102Gfs*57	ENST00000256474	NM_000551.3	102	CCg/Gg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	34	546	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	29	600	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100967	27100967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	39	594	1	ENST00000324856.7:c.4249C>T	p.Gln1417Ter	p.Q1417*	ENST00000324856	NM_006015.4	1417	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	53	519	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0035323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	47	525	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	44	433	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244652	46244652	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	62	535	0	ENST00000334344.6:c.2746C>T	p.Gln916Ter	p.Q916*	ENST00000334344	NM_152641.2	916	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	161	627	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	908	454	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	1152	593	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022824	31022824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	58	532	0	ENST00000375687.4:c.2309C>T	p.Ser770Leu	p.S770L	ENST00000375687	NM_015338.5	770	tCa/tTa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612157	189612157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	64	602	0	ENST00000264731.3:c.1909C>T	p.Arg637Cys	p.R637C	ENST00000264731	NM_003722.4	637	Cgt/Tgt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40497608	40497608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	79	638	0	ENST00000264657.5:c.341G>A	p.Arg114His	p.R114H	ENST00000264657	NM_139276.2	114	cGc/cAc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99440002	99440002	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	52	348	0	ENST00000268035.6:c.970T>A	p.Cys324Ser	p.C324S	ENST00000268035	NM_000875.3	324	Tgt/Agt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969782	81969782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	44	461	0	ENST00000359376.3:c.2851G>T	p.Asp951Tyr	p.D951Y	ENST00000359376	NM_002661.3	951	Gac/Tac																																																																														
CIC	23152	MSKCC	GRCh37	19	42793352	42793352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	91	695	0	ENST00000575354.2:c.1154C>T	p.Ser385Leu	p.S385L	ENST00000575354	NM_015125.3	385	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	298	591	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	246	524	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	231	435	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001374	150001376	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs753305883		P-0035326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	240	666	0	ENST00000253339.5:c.2228_2230del	p.Leu743del	p.L743del	ENST00000253339		743	cTTCga/cga																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67479833	67479833	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	340	499	1	ENST00000327367.4:c.1140G>A	p.Trp380Ter	p.W380*	ENST00000327367	NM_005902.3	380	tgG/tgA																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45371711	45371711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	160	479	0	ENST00000262160.6:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000262160	NM_005901.5	427	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0035367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	456	745	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	240	560	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112174091	112174094	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0035367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	92	351	0	ENST00000257430.4:c.2802_2805delTTAC	p.Tyr935IlefsTer19	p.Y935Ifs*19	ENST00000257430	NM_000038.5	934	ACTTac/ac																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31380572	31380572	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	53	385	0	ENST00000328111.2:c.1062A>T	p.Gln354His	p.Q354H	ENST00000328111	NM_006892.3	354	caA/caT																																																																														
APC	324	MSKCC	GRCh37	5	112175522	112175577	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACA	AGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACA	-			P-0035367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	58	419	0	ENST00000257430.4:c.4232_4287del	p.Ser1411AsnfsTer8	p.S1411Nfs*8	ENST00000257430	NM_000038.5	1411	AGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAa/a																																																																														
NSD1	64324	MSKCC	GRCh37	5	176666812	176666812	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	17	279	0	ENST00000439151.2:c.4248T>A	p.Asn1416Lys	p.N1416K	ENST00000439151	NM_022455.4	1416	aaT/aaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	285	567	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	72	367	1	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986988	36986988	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	174	482	1	ENST00000354822.5:c.701A>T	p.Gln234Leu	p.Q234L	ENST00000354822	NM_001079668.2	234	cAg/cTg																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683183	88683183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	58	359	0	ENST00000372037.3:c.1393C>G	p.Pro465Ala	p.P465A	ENST00000372037	NM_004329.2	465	Ccg/Gcg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118348741	118348741	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	67	409	1	ENST00000534358.1:c.3394A>G	p.Ile1132Val	p.I1132V	ENST00000534358	NM_005933.3	1132	Att/Gtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	447	538	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	335	716	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	159	256	0	ENST00000342988.3:c.431C>A	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tAa																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149516579	149516579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	374	676	1	ENST00000261799.4:c.32C>T	p.Ala11Val	p.A11V	ENST00000261799	NM_002609.3	11	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	150	778	3	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	75	578	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635191	87635191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	49	640	2	ENST00000277120.3:c.2243C>T	p.Thr748Met	p.T748M	ENST00000277120		748	aCg/aTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566818	212566818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	76	443	0	ENST00000342788.4:c.1363G>A	p.Ala455Thr	p.A455T	ENST00000342788	NM_005235.2	455	Gca/Aca																																																																														
WT1	7490	MSKCC	GRCh37	11	32456623	32456623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	23	92	1	ENST00000332351.3:c.269G>A	p.Gly90Asp	p.G90D	ENST00000332351	NM_024426.4	90	gGc/gAc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223255	41223255	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	75	506	1	ENST00000357654.3:c.4676A>G	p.Glu1559Gly	p.E1559G	ENST00000357654	NM_007294.3	1559	gAg/gGg																																																																														
MITF	4286	MSKCC	GRCh37	3	70014064	70014064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	38	612	0	ENST00000352241.4:c.1228G>T	p.Asp410Tyr	p.D410Y	ENST00000352241	NM_198159.2	410	Gat/Tat																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591315	67591318	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GAGT	GAGT	-			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	56	353	0	ENST00000274335.5:c.1813_1814+2del		p.X605_splice	ENST00000274335		605																																																																															
HGF	3082	MSKCC	GRCh37	7	81336660	81336660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	32	364	0	ENST00000222390.5:c.1562G>T	p.Gly521Val	p.G521V	ENST00000222390	NM_000601.4	521	gGa/gTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030570	47030571	+	intron_variant	Intron	INS	-	-	GAGGAGGAGGAGGAT			P-0035372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	21	394	0	ENST00000329236.7:c.201+1688_201+1702dup		p.*67*	ENST00000329236	NM_001204466.1	67																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	225	200	0				ENST00000310581	NM_198253.2																																																																																
CHEK2	11200	MSKCC	GRCh37	22	29115386	29115386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	104	638	2	ENST00000328354.6:c.680G>A	p.Gly227Glu	p.G227E	ENST00000328354	NM_007194.3	227	gGa/gAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925611	114925611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	314	754	3	ENST00000543371.1:c.1689G>T	p.Leu563Phe	p.L563F	ENST00000543371	NM_001198531.1	563	ttG/ttT																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557699	21557699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	224	835	1	ENST00000382592.4:c.2146G>A	p.Glu716Lys	p.E716K	ENST00000382592	NM_014572.2	716	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0035374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	142	711	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778230	27778230	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	141	614	0	ENST00000369163.2:c.379C>G	p.Leu127Val	p.L127V	ENST00000369163	NM_003536.2	127	Ctc/Gtc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581201	48581201	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	124	625	1	ENST00000342988.3:c.505C>T	p.Gln169Ter	p.Q169*	ENST00000342988	NM_005359.5	169	Cag/Tag																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402602	20402613	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCCGCT	GCCGCCGCCGCT	-			P-0035374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	80	176	0	ENST00000346618.3:c.148_159delGCTGCCGCCGCC	p.Ala50_Ala53del	p.A50_A53del	ENST00000346618	NM_001949.4	47	GCCGCCGCCGCT/-																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26031991	26031991	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	144	468	0	ENST00000244661.2:c.298T>C	p.Tyr100His	p.Y100H	ENST00000244661	NM_003537.3	100	Tac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	396	573	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	272	706	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	164	445	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	433	464	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	379	859	1	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
CARM1	10498	MSKCC	GRCh37	19	11015696	11015696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	283	707	0	ENST00000327064.4:c.290C>T	p.Ser97Phe	p.S97F	ENST00000327064	NM_199141.1	97	tCc/tTc																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482809	67482809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	283	651	0	ENST00000327367.4:c.1213C>T	p.Gln405Ter	p.Q405*	ENST00000327367	NM_005902.3	405	Cag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120291	70120292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	423	911	0	ENST00000245479.2:c.1294dup	p.Tyr432LeufsTer146	p.Y432Lfs*146	ENST00000245479	NM_000346.3	431	-/T																																																																														
MALT1	10892	MSKCC	GRCh37	18	56378178	56378196	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACTGAAGGTAGTGTAAGT	CACTGAAGGTAGTGTAAGT	-			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	124	543	0	ENST00000348428.3:c.952_958+12del		p.X318_splice	ENST00000348428	NM_006785.3	318																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38962663	38962663	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	196	443	0	ENST00000357387.3:c.1592A>C	p.Asn531Thr	p.N531T	ENST00000357387	NM_152756.3	531	aAc/aCc																																																																														
SMO	6608	MSKCC	GRCh37	7	128845590	128845590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	255	668	0	ENST00000249373.3:c.887G>A	p.Arg296His	p.R296H	ENST00000249373	NM_005631.4	296	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	151	439	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0035386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	63	537	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89528572	89528572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	35	237	0	ENST00000336596.2:c.2872G>A	p.Val958Met	p.V958M	ENST00000336596	NM_005233.5	958	Gtg/Atg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11098396	11098396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138097741		P-0035386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	43	471	0	ENST00000344626.4:c.914C>T	p.Pro305Leu	p.P305L	ENST00000344626	NM_003072.3	305	cCg/cTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0035386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	49	682	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0035095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	254	681	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133263890	133263890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	163	358	0	ENST00000320574.5:c.12G>T	p.Arg4Ser	p.R4S	ENST00000320574	NM_006231.2	4	agG/agT																																																																														
TAP2	6891	MSKCC	GRCh37	6	32803005	32803005	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	354	662	0	ENST00000374899.4:c.871C>T	p.Arg291Ter	p.R291*	ENST00000374899	NM_018833.2	291	Cga/Tga																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389243	8389243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	299	684	1	ENST00000356435.5:c.4375G>A	p.Glu1459Lys	p.E1459K	ENST00000356435		1459	Gaa/Aaa																																																																														
MED12	9968	MSKCC	GRCh37	X	70352972	70352972	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	241	335	0	ENST00000374080.3:c.4528-1G>A		p.X1510_splice	ENST00000374080		1510																																																																															
STAG2	10735	MSKCC	GRCh37	X	123200076	123200076	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	218	320	0	ENST00000218089.9:c.2148G>C	p.Leu716Phe	p.L716F	ENST00000218089	NM_001042749.1	716	ttG/ttC																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	112	304	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	97	438	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	70	260	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004217	150004217	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	69	371	0	ENST00000253339.5:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000253339		670	Cgg/Tgg																																																																														
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	127	484	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	111	486	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	59	350	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	21	275	1	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39644793	39644793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	63	267	0	ENST00000262039.4:c.2522A>G	p.Lys841Arg	p.K841R	ENST00000262039	NM_002647.2	841	aAg/aGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	106	506	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	82	263	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
ETV1	2115	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	56	429	0	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	108	643	2	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	108	402	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	88	539	1	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29121266	29121266	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	49	746	0	ENST00000328354.6:c.409C>T	p.Arg137Ter	p.R137*	ENST00000328354	NM_007194.3	137	Cga/Tga																																																																														
AXL	558	MSKCC	GRCh37	19	41743896	41743896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	87	791	1	ENST00000301178.4:c.836delC	p.Pro279GlnfsTer18	p.P279Qfs*18	ENST00000301178	NM_021913.4	277	gaC/ga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	122	406	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612344	1612344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	134	801	1	ENST00000344749.5:c.1675G>A	p.Val559Met	p.V559M	ENST00000344749	NM_001136139.2	559	Gtg/Atg																																																																														
FANCC	2176	MSKCC	GRCh37	9	97912349	97912349	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182879858		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	45	349	0	ENST00000289081.3:c.542C>T	p.Ala181Val	p.A181V	ENST00000289081	NM_000136.2	181	gCg/gTg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430936	181430936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	50	731	0	ENST00000325404.1:c.788C>T	p.Ala263Val	p.A263V	ENST00000325404	NM_003106.3	263	gCg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	33	302	2				ENST00000310581	NM_198253.2																																																																																
KMT2C	58508	MSKCC	GRCh37	7	151878530	151878530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	45	608	0	ENST00000262189.6:c.6415C>T	p.Arg2139Ter	p.R2139*	ENST00000262189	NM_170606.2	2139	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	43	702	3	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																														
RXRA	6256	MSKCC	GRCh37	9	137309141	137309141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	74	796	1	ENST00000481739.1:c.748G>A	p.Val250Met	p.V250M	ENST00000481739	NM_002957.4	250	Gtg/Atg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36933561	36933561	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	46	647	4	ENST00000361632.4:c.1726G>A	p.Ala576Thr	p.A576T	ENST00000361632		576	Gcc/Acc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65312344	65312344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	46	430	0	ENST00000342505.4:c.1975C>T	p.Arg659Cys	p.R659C	ENST00000342505	NM_002227.2	659	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210431	36210431	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	91	621	0	ENST00000222270.7:c.424C>T	p.Arg142Ter	p.R142*	ENST00000222270	NM_014727.1	142	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120480611	120480611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	69	397	0	ENST00000256646.2:c.3206G>T	p.Arg1069Leu	p.R1069L	ENST00000256646	NM_024408.3	1069	cGg/cTg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193099332	193099332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	99	352	0	ENST00000367435.3:c.266C>A	p.Pro89His	p.P89H	ENST00000367435	NM_024529.4	89	cCt/cAt																																																																														
FGF19	9965	MSKCC	GRCh37	11	69514056	69514056	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138132534		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	93	584	0	ENST00000294312.3:c.625G>A	p.Val209Met	p.V209M	ENST00000294312	NM_005117.2	209	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426625	49426633	+	inframe_deletion	In_Frame_Del	DEL	GCTGCTGTT	GCTGCTGTT	-			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	41	582	1	ENST00000301067.7:c.11855_11863del	p.Gln3952_Gln3954del	p.Q3952_Q3954del	ENST00000301067	NM_003482.3	3952	cAACAGCAGCta/cta																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434351	49434351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	83	716	1	ENST00000301067.7:c.7202G>A	p.Arg2401His	p.R2401H	ENST00000301067	NM_003482.3	2401	cGc/cAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554443	63554443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	175	593	0	ENST00000307078.5:c.296T>C	p.Leu99Pro	p.L99P	ENST00000307078	NM_004655.3	99	cTg/cCg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2206761	2206761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201645007		P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	91	567	0	ENST00000398665.3:c.821C>A	p.Pro274His	p.P274H	ENST00000398665	NM_032482.2	274	cCt/cAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716287	52716287	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	21	631	0	ENST00000322088.6:c.731T>C	p.Val244Ala	p.V244A	ENST00000322088	NM_014225.5	244	gTg/gCg																																																																														
SRC	6714	MSKCC	GRCh37	20	36031619	36031619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	81	632	0	ENST00000358208.4:c.1448G>A	p.Arg483Gln	p.R483Q	ENST00000358208		483	cGg/cAg																																																																														
RAC2	5880	MSKCC	GRCh37	22	37622733	37622733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	50	681	1	ENST00000249071.6:c.559C>T	p.Arg187Cys	p.R187C	ENST00000249071	NM_002872.4	187	Cgc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1801196	1801196	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	89	799	0	ENST00000260795.2:c.325T>G	p.Cys109Gly	p.C109G	ENST00000260795		109	Tgc/Ggc																																																																														
APC	324	MSKCC	GRCh37	5	112163630	112163630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	18	233	0	ENST00000257430.4:c.1553C>T	p.Thr518Met	p.T518M	ENST00000257430	NM_000038.5	518	aCg/aTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149497191	149497192	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	42	502	0	ENST00000261799.4:c.3126dup	p.Ser1043GlnfsTer9	p.S1043Qfs*9	ENST00000261799	NM_002609.3	1042	-/C																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197242	26197242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	190	431	0	ENST00000356476.2:c.237C>A	p.Phe79Leu	p.F79L	ENST00000356476		79	ttC/ttA																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38162158	38162158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	55	471	0	ENST00000317025.8:c.2558G>A	p.Arg853Gln	p.R853Q	ENST00000317025	NM_023034.1	853	cGg/cAg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36966698	36966698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	40	373	0	ENST00000358127.4:c.628A>G	p.Asn210Asp	p.N210D	ENST00000358127	NM_001280556.1	210	Aac/Gac																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658385	18658385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	113	355	1	ENST00000266497.5:c.3190G>T	p.Gly1064Trp	p.G1064W	ENST00000266497		1064	Ggg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	338	721	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	437	522	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
BRCA1	672	MSKCC	GRCh37	17	41267743	41267764	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTGCAAAATATGTGGTCACACT	TTGCAAAATATGTGGTCACACT	-			P-0035101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	183	458	0	ENST00000357654.3:c.113_134del	p.Lys38AsnfsTer5	p.K38Nfs*5	ENST00000357654	NM_007294.3	38	aAGTGTGACCACATATTTTGCAAa/aa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713430	40713430	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	256	586	0	ENST00000373198.4:c.4085A>C	p.Tyr1362Ser	p.Y1362S	ENST00000373198	NM_133170.3	1362	tAc/tCc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259125	89259125	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	132	353	0	ENST00000336596.2:c.269A>T	p.Asn90Ile	p.N90I	ENST00000336596	NM_005233.5	90	aAc/aTc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150022935	150022935	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	209	490	0	ENST00000253339.5:c.328C>T	p.Gln110Ter	p.Q110*	ENST00000253339		110	Caa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	254	469	0	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	189	373	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929041	32929041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	265	559	0	ENST00000380152.3:c.7051G>A	p.Ala2351Thr	p.A2351T	ENST00000380152		2351	Gca/Aca																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101911534	101911534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111426349		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	62	406	0	ENST00000374994.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000374994	NM_004612.2	487	Cgg/Tgg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259477	89259477	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200567888		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	255	569	0	ENST00000336596.2:c.621G>T	p.Lys207Asn	p.K207N	ENST00000336596	NM_005233.5	207	aaG/aaT																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	247	420	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	236	393	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66242774	66242774	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151302542		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	67	222	0	ENST00000273854.3:c.1798G>A	p.Glu600Lys	p.E600K	ENST00000273854	NM_004439.5	600	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509796	187509796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	54	278	1	ENST00000441802.2:c.13717G>A	p.Glu4573Lys	p.E4573K	ENST00000441802	NM_005245.3	4573	Gaa/Aaa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591278	67591278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	75	374	0	ENST00000274335.5:c.1776G>T	p.Lys592Asn	p.K592N	ENST00000274335		592	aaG/aaT																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971393	15971393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	316	604	0	ENST00000268712.3:c.4556C>T	p.Ser1519Leu	p.S1519L	ENST00000268712	NM_006311.3	1519	tCg/tTg																																																																														
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	81	615	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	154	288	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112177203	112177203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	174	343	0	ENST00000257430.4:c.5912C>A	p.Ser1971Tyr	p.S1971Y	ENST00000257430	NM_000038.5	1971	tCt/tAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162740264	162740264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	140	340	0	ENST00000367921.3:c.1466G>A	p.Arg489Gln	p.R489Q	ENST00000367921	NM_006182.2	489	cGa/cAa																																																																														
KIT	3815	MSKCC	GRCh37	4	55598084	55598084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	77	451	0	ENST00000288135.5:c.2281G>A	p.Glu761Lys	p.E761K	ENST00000288135	NM_000222.2	761	Gag/Aag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126757	5126757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	165	414	0	ENST00000381652.3:c.3365G>A	p.Arg1122Gln	p.R1122Q	ENST00000381652	NM_004972.3	1122	cGa/cAa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938406	76938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	154	429	0	ENST00000373344.5:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000373344	NM_000489.3	781	cGa/cAa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117718123	117718123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	341	633	0	ENST00000368508.3:c.734G>T	p.Arg245Ile	p.R245I	ENST00000368508	NM_002944.2	245	aGa/aTa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710666	114710666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	166	330	0	ENST00000543371.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000543371	NM_001198531.1	51	Gaa/Taa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095626	178095626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	103	545	0	ENST00000397062.3:c.1705C>T	p.Arg569Cys	p.R569C	ENST00000397062	NM_006164.4	569	Cgt/Tgt																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15841000	15841000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	93	271	0	ENST00000307771.7:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000307771	NM_005089.3	362	Gaa/Aaa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	106	223	1	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	139	216	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059183	27059183	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	233	416	0	ENST00000324856.7:c.1820C>A	p.Ser607Ter	p.S607*	ENST00000324856	NM_006015.4	607	tCa/tAa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004349	150004349	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	317	550	0	ENST00000253339.5:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000253339		626	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934864	9934864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	283	610	0	ENST00000330684.3:c.1426G>A	p.Asp476Asn	p.D476N	ENST00000330684	NM_001134407.1	476	Gac/Aac																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50455151	50455151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	116	282	0	ENST00000331340.3:c.698C>T	p.Pro233Leu	p.P233L	ENST00000331340	NM_006060.4	233	cCg/cTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435088	18435088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	301	355	0	ENST00000266497.5:c.73C>A	p.Leu25Ile	p.L25I	ENST00000266497		25	Ctc/Atc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661672	227661672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	50	601	1	ENST00000305123.5:c.1783C>T	p.Arg595Trp	p.R595W	ENST00000305123	NM_005544.2	595	Cgg/Tgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70426835	70426835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	163	394	0	ENST00000373644.4:c.4495C>A	p.Leu1499Ile	p.L1499I	ENST00000373644	NM_030625.2	1499	Ctt/Att																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39609349	39609349	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201418439		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	71	368	0	ENST00000262039.4:c.1651C>T	p.Arg551Trp	p.R551W	ENST00000262039	NM_002647.2	551	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133249857	133249857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	307	357	0	ENST00000320574.5:c.1366G>C	p.Ala456Pro	p.A456P	ENST00000320574	NM_006231.2	456	Gcc/Ccc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650879	37650879	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191899574		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	123	647	1	ENST00000447079.4:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000447079	NM_015083.1	784	cGa/cAa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185167750	185167750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	85	496	0	ENST00000265026.3:c.1073C>A	p.Ser358Tyr	p.S358Y	ENST00000265026	NM_004721.4	358	tCt/tAt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	404837	404837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	116	530	0	ENST00000399788.2:c.4357G>A	p.Asp1453Asn	p.D1453N	ENST00000399788	NM_001042603.1	1453	Gat/Aat																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582935	95582935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	58	471	0	ENST00000343455.3:c.1607G>A	p.Arg536His	p.R536H	ENST00000343455	NM_177438.2	536	cGt/cAt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521884	157521884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	247	435	0	ENST00000346085.5:c.4156C>T	p.Arg1386Cys	p.R1386C	ENST00000346085	NM_020732.3	1386	Cgc/Tgc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255845	16255845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	50	359	0	ENST00000375759.3:c.3110G>A	p.Arg1037Lys	p.R1037K	ENST00000375759	NM_015001.2	1037	aGa/aAa																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66520200	66520200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	287	588	0	ENST00000358598.2:c.484G>A	p.Glu162Lys	p.E162K	ENST00000358598	NM_212471.2	162	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	41961459	41961459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	304	552	0	ENST00000219905.7:c.367C>A	p.Leu123Ile	p.L123I	ENST00000219905	NM_001164273.1	123	Ctt/Att																																																																														
ATM	472	MSKCC	GRCh37	11	108165729	108165729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	66	399	0	ENST00000278616.4:c.4852C>T	p.Arg1618Ter	p.R1618*	ENST00000278616	NM_000051.3	1618	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117631341	117631341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	72	435	0	ENST00000368508.3:c.6337G>T	p.Asp2113Tyr	p.D2113Y	ENST00000368508	NM_002944.2	2113	Gat/Tat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952013	178952013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	68	475	1	ENST00000263967.3:c.3068G>A	p.Arg1023Gln	p.R1023Q	ENST00000263967	NM_006218.2	1023	cGa/cAa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70980735	70980735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	43	580	0	ENST00000276594.2:c.733G>T	p.Asp245Tyr	p.D245Y	ENST00000276594	NM_024504.3	245	Gac/Tac																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031691	69031691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	82	566	0	ENST00000288368.4:c.3446G>A	p.Arg1149His	p.R1149H	ENST00000288368	NM_024870.2	1149	cGc/cAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911655	134911655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	67	381	0	ENST00000398015.3:c.2120C>A	p.Ser707Tyr	p.S707Y	ENST00000398015	NM_004441.4	707	tCt/tAt																																																																														
CBFB	865	MSKCC	GRCh37	16	67132676	67132676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	285	521	0	ENST00000412916.2:c.559C>T	p.Arg187Cys	p.R187C	ENST00000412916		187	Cgt/Tgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152027747	152027747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	455	771	0	ENST00000262189.6:c.328C>T	p.Arg110Ter	p.R110*	ENST00000262189	NM_170606.2	110	Cga/Tga																																																																														
PGR	5241	MSKCC	GRCh37	11	100922251	100922251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	60	378	2	ENST00000325455.5:c.2261C>A	p.Ser754Tyr	p.S754Y	ENST00000325455	NM_001202474.3	754	tCt/tAt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350734	89350734	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146294483		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1637	99	995	0	ENST00000301030.4:c.2216C>T	p.Ser739Leu	p.S739L	ENST00000301030	NM_001256183.1	739	tCg/tTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827388	72827388	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	126	861	0	ENST00000268489.5:c.9193G>T	p.Glu3065Ter	p.E3065*	ENST00000268489	NM_006885.3	3065	Gaa/Taa																																																																														
CBL	867	MSKCC	GRCh37	11	119103322	119103322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	243	510	1	ENST00000264033.4:c.360G>T	p.Glu120Asp	p.E120D	ENST00000264033	NM_005188.3	120	gaG/gaT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43749297	43749297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	425	721	0	ENST00000382044.4:c.1509G>T	p.Lys503Asn	p.K503N	ENST00000382044	NM_001141980.1	503	aaG/aaT																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465526	99465526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	89	528	0	ENST00000268035.6:c.2351A>G	p.Asn784Ser	p.N784S	ENST00000268035	NM_000875.3	784	aAc/aGc																																																																														
TET1	80312	MSKCC	GRCh37	10	70450609	70450609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	213	377	0	ENST00000373644.4:c.5449G>A	p.Glu1817Lys	p.E1817K	ENST00000373644	NM_030625.2	1817	Gaa/Aaa																																																																														
ATRX	546	MSKCC	GRCh37	X	76907822	76907822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	56	154	0	ENST00000373344.5:c.4339G>A	p.Glu1447Lys	p.E1447K	ENST00000373344	NM_000489.3	1447	Gag/Aag																																																																														
KDR	3791	MSKCC	GRCh37	4	55956198	55956198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	86	556	0	ENST00000263923.4:c.3117G>T	p.Lys1039Asn	p.K1039N	ENST00000263923	NM_002253.2	1039	aaG/aaT																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112566	115112566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	142	807	0	ENST00000257566.3:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000257566	NM_016569.3	392	Gcg/Acg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812165	212812165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	45	363	0	ENST00000342788.4:c.411G>T	p.Lys137Asn	p.K137N	ENST00000342788	NM_005235.2	137	aaG/aaT																																																																														
ROS1	6098	MSKCC	GRCh37	6	117647553	117647553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	108	644	0	ENST00000368508.3:c.5391G>T	p.Gln1797His	p.Q1797H	ENST00000368508	NM_002944.2	1797	caG/caT																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1961360	1961360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	74	586	0	ENST00000382891.5:c.3148G>A	p.Glu1050Lys	p.E1050K	ENST00000382891	NM_133335.3	1050	Gag/Aag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255367	16255367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	138	459	0	ENST00000375759.3:c.2632G>A	p.Val878Met	p.V878M	ENST00000375759	NM_015001.2	878	Gtg/Atg																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39321554	39321554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	156	446	0	ENST00000373001.3:c.467G>T	p.Arg156Ile	p.R156I	ENST00000373001	NM_022157.3	156	aGa/aTa																																																																														
DDR2	4921	MSKCC	GRCh37	1	162749975	162749975	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147604927		P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	89	519	0	ENST00000367921.3:c.2507C>T	p.Thr836Met	p.T836M	ENST00000367921	NM_006182.2	836	aCg/aTg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193104684	193104684	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	130	388	0	ENST00000367435.3:c.388G>T	p.Glu130Ter	p.E130*	ENST00000367435	NM_024529.4	130	Gaa/Taa																																																																														
AKT3	10000	MSKCC	GRCh37	1	243736239	243736239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	49	336	0	ENST00000263826.5:c.808C>T	p.Arg270Cys	p.R270C	ENST00000263826	NM_005465.4	270	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711913	89711913	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	165	652	0	ENST00000371953.3:c.531T>G	p.Tyr177Ter	p.Y177*	ENST00000371953	NM_000314.4	177	taT/taG																																																																														
SHOC2	8036	MSKCC	GRCh37	10	112769098	112769098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	84	452	0	ENST00000369452.4:c.1377A>C	p.Lys459Asn	p.K459N	ENST00000369452	NM_007373.3	459	aaA/aaC																																																																														
WT1	7490	MSKCC	GRCh37	11	32414232	32414232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	230	441	0	ENST00000332351.3:c.1319G>T	p.Arg440Ile	p.R440I	ENST00000332351	NM_024426.4	440	aGa/aTa																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205313	61205313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	305	562	0	ENST00000301761.2:c.253C>A	p.Leu85Ile	p.L85I	ENST00000301761	NM_017841.2	85	Ctt/Att																																																																														
EED	8726	MSKCC	GRCh37	11	85988119	85988119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	266	510	0	ENST00000263360.6:c.1064G>A	p.Arg355Gln	p.R355Q	ENST00000263360	NM_003797.3	355	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118361991	118361991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	98	395	0	ENST00000534358.1:c.4777C>T	p.Arg1593Cys	p.R1593C	ENST00000534358	NM_005933.3	1593	Cgc/Tgc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121431455	121431455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	106	542	0	ENST00000257555.6:c.659G>A	p.Arg220Lys	p.R220K	ENST00000257555		220	aGg/aAg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29012447	29012447	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	60	522	0	ENST00000282397.4:c.424A>C	p.Ile142Leu	p.I142L	ENST00000282397	NM_002019.4	142	Atc/Ctc																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337737	73337737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	137	214	0	ENST00000377767.4:c.1979A>G	p.Asn660Ser	p.N660S	ENST00000377767	NM_014953.3	660	aAt/aGt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068968	30068968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	316	637	0	ENST00000331968.5:c.1961G>T	p.Arg654Ile	p.R654I	ENST00000331968	NM_002742.2	654	aGa/aTa																																																																														
AKT1	207	MSKCC	GRCh37	14	105236736	105236736	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	236	679	0	ENST00000349310.3:c.1385A>G	p.Asp462Gly	p.D462G	ENST00000349310	NM_001014432.1	462	gAc/gGc																																																																														
MGA	23269	MSKCC	GRCh37	15	41988603	41988603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	169	488	0	ENST00000219905.7:c.1395G>T	p.Lys465Asn	p.K465N	ENST00000219905	NM_001164273.1	465	aaG/aaT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43701157	43701157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	280	563	0	ENST00000382044.4:c.5538G>T	p.Gln1846His	p.Q1846H	ENST00000382044	NM_001141980.1	1846	caG/caT																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708548	43708548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	409	754	0	ENST00000382044.4:c.4748G>T	p.Arg1583Ile	p.R1583I	ENST00000382044	NM_001141980.1	1583	aGa/aTa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748582	43748582	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	502	1071	0	ENST00000382044.4:c.2224G>T	p.Glu742Ter	p.E742*	ENST00000382044	NM_001141980.1	742	Gaa/Taa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88483943	88483943	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	105	680	0	ENST00000360948.2:c.1627G>T	p.Glu543Ter	p.E543*	ENST00000360948	NM_001012338.2	543	Gaa/Taa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99465378	99465378	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	52	297	0	ENST00000268035.6:c.2203C>T	p.Pro735Ser	p.P735S	ENST00000268035	NM_000875.3	735	Cct/Tct																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81925121	81925121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	76	539	1	ENST00000359376.3:c.912G>T	p.Glu304Asp	p.E304D	ENST00000359376	NM_002661.3	304	gaG/gaT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350669	89350669	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1764	217	1090	0	ENST00000301030.4:c.2281T>G	p.Tyr761Asp	p.Y761D	ENST00000301030	NM_001256183.1	761	Tac/Gac																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990631	7990631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	300	570	0	ENST00000319144.4:c.130G>T	p.Asp44Tyr	p.D44Y	ENST00000319144	NM_001139.2	44	Gac/Tac																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15967469	15967469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	59	547	0	ENST00000268712.3:c.5134G>A	p.Ala1712Thr	p.A1712T	ENST00000268712	NM_006311.3	1712	Gct/Act																																																																														
NF1	4763	MSKCC	GRCh37	17	29586089	29586089	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	189	550	0	ENST00000358273.4:c.4372G>T	p.Glu1458Ter	p.E1458*	ENST00000358273	NM_001042492.2	1458	Gaa/Taa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243927	41243927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	357	729	0	ENST00000357654.3:c.3621G>T	p.Lys1207Asn	p.K1207N	ENST00000357654	NM_007294.3	1207	aaG/aaT																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244942	41244942	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1192	142	786	0	ENST00000357654.3:c.2606T>G	p.Phe869Cys	p.F869C	ENST00000357654	NM_007294.3	869	tTt/tGt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374971	45374971	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	99	563	0	ENST00000262160.6:c.872A>G	p.His291Arg	p.H291R	ENST00000262160	NM_005901.5	291	cAt/cGt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584519	48584519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	68	403	0	ENST00000342988.3:c.692G>A	p.Gly231Asp	p.G231D	ENST00000342988	NM_005359.5	231	gGc/gAc																																																																														
ALK	238	MSKCC	GRCh37	2	29917840	29917840	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	193	700	0	ENST00000389048.3:c.828T>G	p.Tyr276Ter	p.Y276*	ENST00000389048	NM_004304.4	276	taT/taG																																																																														
SOS1	6654	MSKCC	GRCh37	2	39347481	39347481	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	72	416	0	ENST00000402219.2:c.83A>C	p.Lys28Thr	p.K28T	ENST00000402219	NM_005633.3	28	aAa/aCa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095884	178095884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	91	591	1	ENST00000397062.3:c.1447G>A	p.Glu483Lys	p.E483K	ENST00000397062	NM_006164.4	483	Gaa/Aaa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267451	198267451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	87	441	0	ENST00000335508.6:c.1906G>A	p.Ala636Thr	p.A636T	ENST00000335508	NM_012433.2	636	Gcc/Acc																																																																														
CASP8	841	MSKCC	GRCh37	2	202122998	202122998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	73	466	0	ENST00000358485.4:c.44G>T	p.Arg15Ile	p.R15I	ENST00000358485	NM_001080125.1	15	aGa/aTa																																																																														
IDH1	3417	MSKCC	GRCh37	2	209108234	209108234	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	93	579	0	ENST00000345146.2:c.615G>A	p.Trp205Ter	p.W205*	ENST00000345146	NM_005896.2	205	tgG/tgA																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523334	9523334	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	250	492	0	ENST00000353224.5:c.1903G>T	p.Glu635Ter	p.E635*	ENST00000353224	NM_177990.2	635	Gaa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40743866	40743866	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	328	587	0	ENST00000373198.4:c.3129C>A	p.Tyr1043Ter	p.Y1043*	ENST00000373198	NM_133170.3	1043	taC/taA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944557	40944557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	57	484	0	ENST00000373198.4:c.1945C>T	p.Pro649Ser	p.P649S	ENST00000373198	NM_133170.3	649	Ccc/Tcc																																																																														
ERG	2078	MSKCC	GRCh37	21	39772513	39772513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	74	537	0	ENST00000288319.7:c.728G>T	p.Arg243Ile	p.R243I	ENST00000288319	NM_182918.3	243	aGa/aTa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275276	41275276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	220	436	0	ENST00000349496.5:c.1442C>T	p.Ala481Val	p.A481V	ENST00000349496	NM_001904.3	481	gCc/gTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162677	47162677	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	88	522	0	ENST00000409792.3:c.3449G>T	p.Arg1150Ile	p.R1150I	ENST00000409792	NM_014159.6	1150	aGa/aTa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49929245	49929245	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	361	764	1	ENST00000296474.3:c.3298G>T	p.Glu1100Ter	p.E1100*	ENST00000296474	NM_002447.2	1100	Gaa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142257331	142257331	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	236	440	0	ENST00000350721.4:c.3718G>T	p.Glu1240Ter	p.E1240*	ENST00000350721	NM_001184.3	1240	Gaa/Taa																																																																														
ATR	545	MSKCC	GRCh37	3	142279115	142279115	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	72	399	0	ENST00000350721.4:c.1531A>C	p.Asn511His	p.N511H	ENST00000350721	NM_001184.3	511	Aac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178919111	178919111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	29	310	0	ENST00000263967.3:c.596C>A	p.Ser199Tyr	p.S199Y	ENST00000263967	NM_006218.2	199	tCt/tAt																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191451	185191451	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	144	717	1	ENST00000265026.3:c.2332G>T	p.Glu778Ter	p.E778*	ENST00000265026	NM_004721.4	778	Gaa/Taa																																																																														
KDR	3791	MSKCC	GRCh37	4	55981172	55981172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	98	561	0	ENST00000263923.4:c.527G>T	p.Arg176Ile	p.R176I	ENST00000263923	NM_002253.2	176	aGa/aTa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539736	187539736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	172	510	1	ENST00000441802.2:c.8004C>A	p.Phe2668Leu	p.F2668L	ENST00000441802	NM_005245.3	2668	ttC/ttA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950571	38950571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	120	622	0	ENST00000357387.3:c.3379A>G	p.Ser1127Gly	p.S1127G	ENST00000357387	NM_152756.3	1127	Agc/Ggc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56176993	56176993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	95	457	0	ENST00000399503.3:c.2263C>A	p.Leu755Ile	p.L755I	ENST00000399503	NM_005921.1	755	Ctt/Att																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753027	57753027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	202	427	0	ENST00000274289.3:c.989G>A	p.Arg330Gln	p.R330Q	ENST00000274289	NM_006622.3	330	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112090654	112090654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	90	291	0	ENST00000257430.4:c.67C>A	p.Leu23Ile	p.L23I	ENST00000257430	NM_000038.5	23	Ctt/Att																																																																														
APC	324	MSKCC	GRCh37	5	112116529	112116529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	165	286	1	ENST00000257430.4:c.574G>T	p.Glu192Ter	p.E192*	ENST00000257430	NM_000038.5	192	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112177403	112177403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	53	338	0	ENST00000257430.4:c.6112C>A	p.Leu2038Met	p.L2038M	ENST00000257430	NM_000038.5	2038	Ctg/Atg																																																																														
IRF4	3662	MSKCC	GRCh37	6	401593	401593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	71	493	0	ENST00000380956.4:c.915G>T	p.Glu305Asp	p.E305D	ENST00000380956	NM_001195286.1	305	gaG/gaT																																																																														
IRF4	3662	MSKCC	GRCh37	6	405061	405061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	236	466	0	ENST00000380956.4:c.1143C>A	p.Phe381Leu	p.F381L	ENST00000380956	NM_001195286.1	381	ttC/ttA																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93964441	93964441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	97	647	0	ENST00000369303.4:c.2456T>C	p.Val819Ala	p.V819A	ENST00000369303	NM_004440.3	819	gTa/gCa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117683872	117683872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	205	639	0	ENST00000368508.3:c.3275G>T	p.Ser1092Ile	p.S1092I	ENST00000368508	NM_002944.2	1092	aGt/aTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117708103	117708103	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	227	505	0	ENST00000368508.3:c.2074A>C	p.Asn692His	p.N692H	ENST00000368508	NM_002944.2	692	Aat/Cat																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997741	149997741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	255	427	0	ENST00000253339.5:c.2726C>A	p.Ser909Tyr	p.S909Y	ENST00000253339		909	tCt/tAt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001560	150001560	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	258	515	0	ENST00000253339.5:c.2044A>G	p.Arg682Gly	p.R682G	ENST00000253339		682	Aga/Gga																																																																														
RHEB	6009	MSKCC	GRCh37	7	151174437	151174437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	66	381	0	ENST00000262187.5:c.257C>A	p.Ser86Tyr	p.S86Y	ENST00000262187	NM_005614.3	86	tCt/tAt																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38178654	38178654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	121	574	0	ENST00000317025.8:c.1745G>T	p.Arg582Ile	p.R582I	ENST00000317025	NM_023034.1	582	aGa/aTa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995501	68995501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	115	608	0	ENST00000288368.4:c.1905G>T	p.Lys635Asn	p.K635N	ENST00000288368	NM_024870.2	635	aaG/aaT																																																																														
TEK	7010	MSKCC	GRCh37	9	27202911	27202911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	321	650	0	ENST00000380036.4:c.2003C>T	p.Ser668Phe	p.S668F	ENST00000380036	NM_000459.3	668	tCt/tTt																																																																														
TEK	7010	MSKCC	GRCh37	9	27206730	27206730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	88	578	1	ENST00000380036.4:c.2515C>A	p.Leu839Ile	p.L839I	ENST00000380036	NM_000459.3	839	Ctt/Att																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209460	98209460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	260	603	0	ENST00000331920.6:c.4078T>A	p.Ser1360Thr	p.S1360T	ENST00000331920	NM_000264.3	1360	Tcc/Acc																																																																														
ATRX	546	MSKCC	GRCh37	X	76939692	76939692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	121	365	0	ENST00000373344.5:c.1056G>T	p.Met352Ile	p.M352I	ENST00000373344	NM_000489.3	352	atG/atT																																																																														
XIAP	331	MSKCC	GRCh37	X	123041020	123041020	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	37	67	0	ENST00000355640.3:c.1483T>G	p.Phe495Val	p.F495V	ENST00000355640		495	Ttt/Gtt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	56	467	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	39	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175755	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	23	248	0	ENST00000257430.4:c.4464del	p.Leu1488PhefsTer19	p.L1488Ffs*19	ENST00000257430	NM_000038.5	1488	ttA/tt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	29	361	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	66	309	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
APC	324	MSKCC	GRCh37	5	112173730	112173730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	27	294	1	ENST00000257430.4:c.2442del	p.Phe814LeufsTer6	p.F814Lfs*6	ENST00000257430	NM_000038.5	813	aaT/aa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481620	56481620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	78	565	0	ENST00000267101.3:c.655T>C	p.Phe219Leu	p.F219L	ENST00000267101	NM_001982.3	219	Ttt/Ctt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223325	2223325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	51	538	2	ENST00000326181.6:c.937G>A	p.Ala313Thr	p.A313T	ENST00000326181	NM_032271.2	313	Gcc/Acc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982987	201982987	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	93	552	0	ENST00000359651.3:c.836T>C	p.Ile279Thr	p.I279T	ENST00000359651		279	aTc/aCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579732	7579873	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAGCAGAAAGTCAGTCCCATGGAATTTTCGCTTCCCACAGGTCTCTGCTAGGGGGCTGGGGTTGGGGTGGGGGTGGTGGGCCTGCCCTTCCAATGGATCCACTCACAGTTTCCATAGGTCTGAAAATGTTTCCTGACTCAG	AGAGCAGAAAGTCAGTCCCATGGAATTTTCGCTTCCCACAGGTCTCTGCTAGGGGGCTGGGGTTGGGGTGGGGGTGGTGGGCCTGCCCTTCCAATGGATCCACTCACAGTTTCCATAGGTCTGAAAATGTTTCCTGACTCAG	-			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	34	450	0	ENST00000269305.4:c.40_75-11del		p.X14_splice	ENST00000269305	NM_001126112.2	14																																																																															
SOX9	6662	MSKCC	GRCh37	17	70117677	70117677	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	142	507	2	ENST00000245479.2:c.145C>T	p.Gln49Ter	p.Q49*	ENST00000245479	NM_000346.3	49	Cag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530132	212530132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	40	335	0	ENST00000342788.4:c.1787G>T	p.Gly596Val	p.G596V	ENST00000342788	NM_005235.2	596	gGc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112173388	112173388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	20	228	0	ENST00000257430.4:c.2097G>A	p.Trp699Ter	p.W699*	ENST00000257430	NM_000038.5	699	tgG/tgA																																																																														
RAD50	10111	MSKCC	GRCh37	5	131944382	131944385	+	frameshift_variant	Frame_Shift_Del	DEL	AAAA	AAAA	-			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	19	189	0	ENST00000265335.6:c.2798_2801del	p.Lys933IlefsTer6	p.K933Ifs*6	ENST00000265335		932	AAAAaa/aa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910659	29910659	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	78	729	0	ENST00000376809.5:c.199C>T	p.Gln67Ter	p.Q67*	ENST00000376809	NM_002116.7	67	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443701	49443701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	192	534	0	ENST00000301067.7:c.3670G>C	p.Glu1224Gln	p.E1224Q	ENST00000301067	NM_003482.3	1224	Gag/Cag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3799654	3799654	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	109	360	0	ENST00000262367.5:c.3810G>C	p.Lys1270Asn	p.K1270N	ENST00000262367	NM_004380.2	1270	aaG/aaC																																																																														
STAT3	6774	MSKCC	GRCh37	17	40490790	40490790	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	282	358	0	ENST00000264657.5:c.509A>T	p.Asp170Val	p.D170V	ENST00000264657	NM_139276.2	170	gAt/gTt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216592	2216592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	237	638	0	ENST00000398665.3:c.2236G>A	p.Glu746Lys	p.E746K	ENST00000398665	NM_032482.2	746	Gag/Aag																																																																														
EP300	2033	MSKCC	GRCh37	22	41513694	41513694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	151	413	0	ENST00000263253.7:c.598C>T	p.Arg200Ter	p.R200*	ENST00000263253	NM_001429.3	200	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0035225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	261	449	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271447	26271447	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	124	365	0	ENST00000305910.3:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000305910	NM_003534.2	56	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006116-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	95	540	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006116-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	83	801	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348785	11348785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006116-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	21	454	0	ENST00000332029.2:c.551C>T	p.Ala184Val	p.A184V	ENST00000332029	NM_003745.1	184	gCc/gTc																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251992	8251992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006116-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			914	54	882	0	ENST00000335790.3:c.85C>A	p.Arg29Ser	p.R29S	ENST00000335790	NM_002315.2	29	Cgc/Agc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524719	187524719	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006116-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			994	56	889	0	ENST00000441802.2:c.10961A>T	p.Glu3654Val	p.E3654V	ENST00000441802	NM_005245.3	3654	gAa/gTa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775722	9775722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	110	731	0	ENST00000377346.4:c.265C>A	p.Leu89Met	p.L89M	ENST00000377346	NM_005026.3	89	Ctg/Atg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217325	11217325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	104	691	0	ENST00000361445.4:c.4353G>T	p.Glu1451Asp	p.E1451D	ENST00000361445	NM_004958.3	1451	gaG/gaT																																																																														
MTOR	2475	MSKCC	GRCh37	1	11307755	11307755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	92	581	0	ENST00000361445.4:c.1152G>T	p.Lys384Asn	p.K384N	ENST00000361445	NM_004958.3	384	aaG/aaT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255862	16255862	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	65	399	0	ENST00000375759.3:c.3127G>T	p.Glu1043Ter	p.E1043*	ENST00000375759	NM_015001.2	1043	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	109	589	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106364	27106364	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	87	601	0	ENST00000324856.7:c.5975C>A	p.Ser1992Ter	p.S1992*	ENST00000324856	NM_006015.4	1992	tCa/tAa																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366955	40366955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	54	543	1	ENST00000397332.2:c.242C>A	p.Ala81Glu	p.A81E	ENST00000397332	NM_001033082.2	81	gCa/gAa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72058628	72058628	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	76	550	0	ENST00000357731.5:c.812T>G	p.Ile271Ser	p.I271S	ENST00000357731	NM_173808.2	271	aTt/aGt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115261278	115261278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	74	540	0	ENST00000438362.2:c.2443C>T	p.Arg815Cys	p.R815C	ENST00000438362	NM_001242891.1	815	Cgc/Tgc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273024	115273024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	96	618	0	ENST00000438362.2:c.1349G>T	p.Arg450Ile	p.R450I	ENST00000438362	NM_001242891.1	450	aGa/aTa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156836706	156836706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	101	717	0	ENST00000524377.1:c.364C>A	p.Leu122Ile	p.L122I	ENST00000524377	NM_002529.3	122	Ctc/Atc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851255	156851255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	74	556	0	ENST00000524377.1:c.2212G>A	p.Asp738Asn	p.D738N	ENST00000524377	NM_002529.3	738	Gac/Aac																																																																														
DDR2	4921	MSKCC	GRCh37	1	162741993	162741993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	77	467	0	ENST00000367921.3:c.1684C>A	p.Leu562Ile	p.L562I	ENST00000367921	NM_006182.2	562	Ctc/Atc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850642	63850642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	27	300	0	ENST00000279873.7:c.1420G>T	p.Glu474Ter	p.E474*	ENST00000279873	NM_032199.2	474	Gaa/Taa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852632	63852632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	100	605	0	ENST00000279873.7:c.3410C>A	p.Ser1137Tyr	p.S1137Y	ENST00000279873	NM_032199.2	1137	tCt/tAt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852688	63852688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	105	644	0	ENST00000279873.7:c.3466G>A	p.Asp1156Asn	p.D1156N	ENST00000279873	NM_032199.2	1156	Gac/Aac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624244	89624244	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	35	216	0	ENST00000371953.3:c.18A>C	p.Lys6Asn	p.K6N	ENST00000371953	NM_000314.4	6	aaA/aaC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	59	512	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720870	89720870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	56	247	0	ENST00000371953.3:c.1021T>G	p.Phe341Val	p.F341V	ENST00000371953	NM_000314.4	341	Ttt/Gtt																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161456	2161456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	115	597	0	ENST00000434045.2:c.71G>A	p.Arg24His	p.R24H	ENST00000434045	NM_001127598.1	24	cGc/cAc																																																																														
WT1	7490	MSKCC	GRCh37	11	32456400	32456400	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	68	577	0	ENST00000332351.3:c.492T>G	p.Phe164Leu	p.F164L	ENST00000332351	NM_024426.4	164	ttT/ttG																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588217	69588217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	71	576	0	ENST00000168712.1:c.481C>A	p.Leu161Ile	p.L161I	ENST00000168712	NM_002007.2	161	Ctc/Atc																																																																														
SESN3	143686	MSKCC	GRCh37	11	94923009	94923009	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	70	600	0	ENST00000536441.1:c.459A>C	p.Lys153Asn	p.K153N	ENST00000536441	NM_144665.3	153	aaA/aaC																																																																														
ATM	472	MSKCC	GRCh37	11	108154992	108154992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	54	518	0	ENST00000278616.4:c.3785G>T	p.Arg1262Ile	p.R1262I	ENST00000278616	NM_000051.3	1262	aGa/aTa																																																																														
ATM	472	MSKCC	GRCh37	11	108203492	108203492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138941496		P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	85	273	0	ENST00000278616.4:c.7792C>T	p.Arg2598Ter	p.R2598*	ENST00000278616	NM_000051.3	2598	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342513	118342513	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	11	236	0	ENST00000534358.1:c.639A>C	p.Lys213Asn	p.K213N	ENST00000534358	NM_005933.3	213	aaA/aaC																																																																														
CBL	867	MSKCC	GRCh37	11	119170426	119170426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	78	453	1	ENST00000264033.4:c.2656G>A	p.Glu886Lys	p.E886K	ENST00000264033	NM_005188.3	886	Gag/Aag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18552648	18552648	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	78	622	0	ENST00000266497.5:c.2059G>T	p.Glu687Ter	p.E687*	ENST00000266497		687	Gaa/Taa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793408	18793408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	41	518	2	ENST00000266497.5:c.4105C>T	p.Leu1369Phe	p.L1369F	ENST00000266497		1369	Ctt/Ttt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445674	49445674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	168	977	0	ENST00000301067.7:c.1792C>T	p.Arg598Cys	p.R598C	ENST00000301067	NM_003482.3	598	Cgt/Tgt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109794	115109794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	68	566	0	ENST00000257566.3:c.2084G>A	p.Arg695His	p.R695H	ENST00000257566	NM_016569.3	695	cGc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	82	548	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
RB1	5925	MSKCC	GRCh37	13	48878170	48878170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	14	99	0	ENST00000267163.4:c.122A>G	p.Asp41Gly	p.D41G	ENST00000267163	NM_000321.2	41	gAc/gGc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103513972	103513972	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61749896		P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	36	405	0	ENST00000355739.4:c.788G>A	p.Arg263Gln	p.R263Q	ENST00000355739	NM_000123.3	263	cGa/cAa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515211	103515211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	46	392	0	ENST00000355739.4:c.1712C>T	p.Pro571Leu	p.P571L	ENST00000355739	NM_000123.3	571	cCg/cTg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30396458	30396458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	29	283	0	ENST00000331968.5:c.261G>T	p.Gln87His	p.Q87H	ENST00000331968	NM_002742.2	87	caG/caT																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68353744	68353744	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	40	337	0	ENST00000487270.1:c.579A>C	p.Glu193Asp	p.E193D	ENST00000487270	NM_133509.3	193	gaA/gaC																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023106	33023106	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	52	429	0	ENST00000300177.4:c.215A>C	p.Glu72Ala	p.E72A	ENST00000300177	NM_001191322.1	72	gAg/gCg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3799632	3799632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	58	505	0	ENST00000262367.5:c.3832G>A	p.Glu1278Lys	p.E1278K	ENST00000262367	NM_004380.2	1278	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3824685	3824685	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	90	449	0	ENST00000262367.5:c.2168C>A	p.Ser723Ter	p.S723*	ENST00000262367	NM_004380.2	723	tCa/tAa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647640	23647640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	51	417	0	ENST00000261584.4:c.227T>C	p.Ile76Thr	p.I76T	ENST00000261584	NM_024675.3	76	aTa/aCa																																																																														
CBFB	865	MSKCC	GRCh37	16	67132649	67132649	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	67	606	0	ENST00000412916.2:c.532T>G	p.Leu178Val	p.L178V	ENST00000412916		178	Tta/Gta																																																																														
CDH1	999	MSKCC	GRCh37	16	68844181	68844181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	97	675	0	ENST00000261769.5:c.769G>T	p.Asp257Tyr	p.D257Y	ENST00000261769	NM_004360.3	257	Gac/Tac																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12011200	12011200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	45	397	0	ENST00000353533.5:c.607G>T	p.Glu203Ter	p.E203*	ENST00000353533	NM_003010.3	203	Gaa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	87	554	1	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29661910	29661910	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	84	607	0	ENST00000358273.4:c.5867T>G	p.Leu1956Arg	p.L1956R	ENST00000358273	NM_001042492.2	1956	cTa/cGa																																																																														
STAT3	6774	MSKCC	GRCh37	17	40490816	40490816	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	82	485	0	ENST00000264657.5:c.483A>C	p.Lys161Asn	p.K161N	ENST00000264657	NM_139276.2	161	aaA/aaC																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761387	59761387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	36	607	0	ENST00000259008.2:c.3020C>A	p.Ser1007Tyr	p.S1007Y	ENST00000259008	NM_032043.2	1007	tCt/tAt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763515	59763515	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	49	554	0	ENST00000259008.2:c.2587T>C	p.Trp863Arg	p.W863R	ENST00000259008	NM_032043.2	863	Tgg/Cgg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59853881	59853881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	55	472	1	ENST00000259008.2:c.1978C>A	p.Leu660Ile	p.L660I	ENST00000259008	NM_032043.2	660	Ctc/Atc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39609382	39609382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	64	361	0	ENST00000262039.4:c.1684G>A	p.Glu562Lys	p.E562K	ENST00000262039	NM_002647.2	562	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15284964	15284964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	104	619	0	ENST00000263388.2:c.4651G>A	p.Gly1551Ser	p.G1551S	ENST00000263388	NM_000435.2	1551	Ggc/Agc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375267	15375267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	100	640	0	ENST00000263377.2:c.1160T>C	p.Leu387Pro	p.L387P	ENST00000263377	NM_058243.2	387	cTa/cCa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965460	25965460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	106	773	0	ENST00000435504.4:c.3746T>A	p.Leu1249Gln	p.L1249Q	ENST00000435504		1249	cTg/cAg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99203950	99203950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	55	373	0	ENST00000074304.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000074304	NM_001134224.1	938	cGa/cAa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096261	178096261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	102	608	1	ENST00000397062.3:c.1070C>T	p.Pro357Leu	p.P357L	ENST00000397062	NM_006164.4	357	cCa/cTa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682825	190682825	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	75	489	0	ENST00000441310.2:c.501T>A	p.Asp167Glu	p.D167E	ENST00000441310	NM_000534.4	167	gaT/gaA																																																																														
CASP8	841	MSKCC	GRCh37	2	202131315	202131315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	64	504	0	ENST00000358485.4:c.283G>T	p.Glu95Ter	p.E95*	ENST00000358485	NM_001080125.1	95	Gaa/Taa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419841	41419841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	76	401	1	ENST00000373198.4:c.480C>A	p.Phe160Leu	p.F160L	ENST00000373198	NM_133170.3	160	ttC/ttA																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46275971	46275971	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	91	544	0	ENST00000371998.3:c.3407A>C	p.Asn1136Thr	p.N1136T	ENST00000371998		1136	aAc/aCc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12393128	12393128	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	40	572	0	ENST00000287820.6:c.37G>T	p.Glu13Ter	p.E13*	ENST00000287820	NM_015869.4	13	Gaa/Taa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162904	47162904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	62	502	0	ENST00000409792.3:c.3222G>T	p.Lys1074Asn	p.K1074N	ENST00000409792	NM_014159.6	1074	aaG/aaT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165319	47165319	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	62	526	0	ENST00000409792.3:c.807A>C	p.Gln269His	p.Q269H	ENST00000409792	NM_014159.6	269	caA/caC																																																																														
RHOA	387	MSKCC	GRCh37	3	49405962	49405962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	97	456	0	ENST00000418115.1:c.176A>G	p.Asp59Gly	p.D59G	ENST00000418115	NM_001664.2	59	gAc/gGc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682438	52682438	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	84	494	0	ENST00000394830.3:c.735T>G	p.Ile245Met	p.I245M	ENST00000394830	NM_018313.4	245	atT/atG																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72866502	72866502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	54	369	0	ENST00000325599.8:c.761G>A	p.Arg254Gln	p.R254Q	ENST00000325599	NM_018130.2	254	cGa/cAa																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73113266	73113266	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	22	189	0	ENST00000356692.5:c.607A>C	p.Asn203His	p.N203H	ENST00000356692		203	Aat/Cat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468507	89468507	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	38	338	1	ENST00000336596.2:c.2041A>T	p.Asn681Tyr	p.N681Y	ENST00000336596	NM_005233.5	681	Aat/Tat																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	73	585	0	ENST00000289153.2:c.3199G>T	p.Asp1067Tyr	p.D1067Y	ENST00000289153	NM_006219.2	1067	Gac/Tac																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	36	445	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149260177	149260177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	105	611	0	ENST00000360632.3:c.716G>T	p.Arg239Ile	p.R239I	ENST00000360632	NM_015472.4	239	aGa/aTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127355	55127355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	68	637	0	ENST00000257290.5:c.143G>T	p.Arg48Ile	p.R48I	ENST00000257290	NM_006206.4	48	aGa/aTa																																																																														
KDR	3791	MSKCC	GRCh37	4	55946206	55946206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	96	498	0	ENST00000263923.4:c.3973G>A	p.Glu1325Lys	p.E1325K	ENST00000263923	NM_002253.2	1325	Gaa/Aaa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189918	66189918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	69	370	0	ENST00000273854.3:c.3028G>A	p.Val1010Met	p.V1010M	ENST00000273854	NM_004439.5	1010	Gtg/Atg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467768	66467768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	42	506	0	ENST00000273854.3:c.501G>T	p.Lys167Asn	p.K167N	ENST00000273854	NM_004439.5	167	aaG/aaT																																																																														
INPP4B	8821	MSKCC	GRCh37	4	142950056	142950056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	37	462	2	ENST00000262992.4:c.2654G>A	p.Arg885His	p.R885H	ENST00000262992	NM_001101669.1	885	cGc/cAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	76	445	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	39	340	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591007	67591007	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	21	240	0	ENST00000274335.5:c.1600C>T	p.Arg534Ter	p.R534*	ENST00000274335		534	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628323	86628323	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	32	401	0	ENST00000274376.6:c.693-1G>A		p.X231_splice	ENST00000274376	NM_002890.2	231																																																																															
RASA1	5921	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	38	393	0	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175127	112175127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	37	281	0	ENST00000257430.4:c.3836C>A	p.Ser1279Tyr	p.S1279Y	ENST00000257430	NM_000038.5	1279	tCt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112175486	112175486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	52	373	1	ENST00000257430.4:c.4195C>T	p.Arg1399Cys	p.R1399C	ENST00000257430	NM_000038.5	1399	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112177793	112177793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	43	327	0	ENST00000257430.4:c.6502C>A	p.Leu2168Ile	p.L2168I	ENST00000257430	NM_000038.5	2168	Cta/Ata																																																																														
RAD50	10111	MSKCC	GRCh37	5	131939098	131939098	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	28	497	3	ENST00000265335.6:c.2314G>T	p.Glu772Ter	p.E772*	ENST00000265335		772	Gaa/Taa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048729	180048729	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	121	784	0	ENST00000261937.6:c.1833G>T	p.Lys611Asn	p.K611N	ENST00000261937	NM_182925.4	611	aaG/aaT																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120378	94120378	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	53	384	0	ENST00000369303.4:c.673T>C	p.Ser225Pro	p.S225P	ENST00000369303	NM_004440.3	225	Tcc/Ccc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117663588	117663588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	90	713	0	ENST00000368508.3:c.4644G>T	p.Glu1548Asp	p.E1548D	ENST00000368508	NM_002944.2	1548	gaG/gaT																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	81	682	1	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55240795	55240795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	98	741	1	ENST00000275493.2:c.2039G>T	p.Arg680Leu	p.R680L	ENST00000275493	NM_005228.3	680	cGg/cTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	38	288	0	ENST00000275493.2:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000275493	NM_005228.3	761	Gat/Aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268059	55268059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	105	749	0	ENST00000275493.2:c.2899G>A	p.Glu967Lys	p.E967K	ENST00000275493	NM_005228.3	967	Gaa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81381567	81381567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	41	288	0	ENST00000222390.5:c.494C>T	p.Ser165Leu	p.S165L	ENST00000222390	NM_000601.4	165	tCg/tTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81392061	81392061	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	52	473	0	ENST00000222390.5:c.216T>G	p.Asn72Lys	p.N72K	ENST00000222390	NM_000601.4	72	aaT/aaG																																																																														
MET	4233	MSKCC	GRCh37	7	116413981	116413981	+	intron_variant	Intron	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	134	1026	0	ENST00000397752.3:c.3029-954G>T		p.*1010*	ENST00000397752	NM_000245.2	1010																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151856013	151856013	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	115	594	0	ENST00000262189.6:c.11605A>G	p.Lys3869Glu	p.K3869E	ENST00000262189	NM_170606.2	3869	Aaa/Gaa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132745	152132745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	42	339	0	ENST00000262189.6:c.127G>T	p.Asp43Tyr	p.D43Y	ENST00000262189	NM_170606.2	43	Gat/Tat																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38137162	38137162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	97	701	0	ENST00000317025.8:c.3656C>A	p.Ser1219Tyr	p.S1219Y	ENST00000317025	NM_023034.1	1219	tCt/tAt																																																																														
NBN	4683	MSKCC	GRCh37	8	90960060	90960060	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	58	397	0	ENST00000265433.3:c.1906G>T	p.Glu636Ter	p.E636*	ENST00000265433	NM_002485.4	636	Gaa/Taa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117869571	117869571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	61	565	0	ENST00000297338.2:c.623A>G	p.His208Arg	p.H208R	ENST00000297338	NM_006265.2	208	cAt/cGt																																																																														
TEK	7010	MSKCC	GRCh37	9	27157883	27157883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	97	564	0	ENST00000380036.4:c.107C>T	p.Ser36Phe	p.S36F	ENST00000380036	NM_000459.3	36	tCt/tTt																																																																														
TEK	7010	MSKCC	GRCh37	9	27197472	27197472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	109	639	0	ENST00000380036.4:c.1784G>T	p.Gly595Val	p.G595V	ENST00000380036	NM_000459.3	595	gGc/gTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410342	63410342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	102	781	0	ENST00000330258.3:c.2825G>A	p.Arg942Gln	p.R942Q	ENST00000330258	NM_152424.3	942	cGa/cAa																																																																														
AR	367	MSKCC	GRCh37	X	66931429	66931429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	113	604	1	ENST00000374690.3:c.2071G>A	p.Asp691Asn	p.D691N	ENST00000374690	NM_000044.3	691	Gac/Aac																																																																														
ATRX	546	MSKCC	GRCh37	X	76937577	76937577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	62	513	0	ENST00000373344.5:c.3171G>T	p.Lys1057Asn	p.K1057N	ENST00000373344	NM_000489.3	1057	aaG/aaT																																																																														
ATRX	546	MSKCC	GRCh37	X	76937580	76937580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	71	510	0	ENST00000373344.5:c.3168G>T	p.Lys1056Asn	p.K1056N	ENST00000373344	NM_000489.3	1056	aaG/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	257	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	141	403	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	88	468	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	125	345	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928067	178928067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	58	580	0	ENST00000263967.3:c.1345C>T	p.Pro449Ser	p.P449S	ENST00000263967	NM_006218.2	449	Cct/Tct																																																																														
MSH2	4436	MSKCC	GRCh37	2	47709954	47709954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	196	328	1	ENST00000233146.2:c.2671G>A	p.Val891Met	p.V891M	ENST00000233146	NM_000251.2	891	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112175641	112175641	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	234	305	0	ENST00000257430.4:c.4350del	p.Glu1451LysfsTer22	p.E1451Kfs*22	ENST00000257430	NM_000038.5	1450	cgA/cg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69020566	69020566	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	47	433	0	ENST00000288368.4:c.2938G>A	p.Gly980Arg	p.G980R	ENST00000288368	NM_024870.2	980	Ggg/Agg																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145742835	145742835	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	24	294	0	ENST00000428558.2:c.176T>C	p.Leu59Pro	p.L59P	ENST00000428558	NM_004260.3	59	cTc/cCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	24	367	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	53	126	0				ENST00000310581	NM_198253.2																																																																																
NOTCH1	4851	MSKCC	GRCh37	9	139413900	139413900	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	226	481	0	ENST00000277541.6:c.860G>A	p.Trp287Ter	p.W287*	ENST00000277541	NM_017617.3	287	tGg/tAg																																																																														
CDH1	999	MSKCC	GRCh37	16	68847282	68847282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	129	464	0	ENST00000261769.5:c.1204G>A	p.Asp402Asn	p.D402N	ENST00000261769	NM_004360.3	402	Gat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390197	89390197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	93	432	0	ENST00000336596.2:c.946G>A	p.Asp316Asn	p.D316N	ENST00000336596	NM_005233.5	316	Gac/Aac																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518560	204518560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	58	341	0	ENST00000367182.3:c.1223C>T	p.Ser408Leu	p.S408L	ENST00000367182	NM_001278516.1	408	tCa/tTa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796963	78796963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	224	535	0	ENST00000306801.3:c.1076C>T	p.Ser359Leu	p.S359L	ENST00000306801	NM_020761.2	359	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578549	7578550	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	121	604	0	ENST00000269305.4:c.380_381delinsTT	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCC/tTT																																																																														
APC	324	MSKCC	GRCh37	5	112178988	112178988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	79	322	0	ENST00000257430.4:c.7697G>A	p.Arg2566Lys	p.R2566K	ENST00000257430	NM_000038.5	2566	aGa/aAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860517	151860517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	129	656	3	ENST00000262189.6:c.10145G>A	p.Arg3382Gln	p.R3382Q	ENST00000262189	NM_170606.2	3382	cGg/cAg																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939076	36939083	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCCCCA	GGTCCCCA	-			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	78	548	1	ENST00000361632.4:c.626_633del	p.Leu209GlnfsTer9	p.L209Qfs*9	ENST00000361632		209	cTGGGGACC/c																																																																														
RET	5979	MSKCC	GRCh37	10	43617428	43617428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	133	531	1	ENST00000355710.3:c.2765C>T	p.Ser922Phe	p.S922F	ENST00000355710	NM_020975.4	922	tCc/tTc																																																																														
ATM	472	MSKCC	GRCh37	11	108202715	108202715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	96	400	0	ENST00000278616.4:c.7739G>A	p.Arg2580Lys	p.R2580K	ENST00000278616	NM_000051.3	2580	aGa/aAa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864720	57864720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	131	535	0	ENST00000228682.2:c.2197G>A	p.Gly733Arg	p.G733R	ENST00000228682	NM_005269.2	733	Ggg/Agg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32945176	32945177	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	62	408	2	ENST00000380152.3:c.8571_8572delinsTT	p.Gln2858Ter	p.Q2858*	ENST00000380152		2857	gcCCaa/gcTTaa																																																																														
SLX4	84464	MSKCC	GRCh37	16	3639374	3639374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	105	588	1	ENST00000294008.3:c.4265C>T	p.Pro1422Leu	p.P1422L	ENST00000294008	NM_032444.2	1422	cCa/cTa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10032302	10032302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	68	562	0	ENST00000330684.3:c.521C>T	p.Thr174Ile	p.T174I	ENST00000330684	NM_001134407.1	174	aCc/aTc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650699	67650699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	158	568	0	ENST00000264010.4:c.1004G>A	p.Gly335Glu	p.G335E	ENST00000264010	NM_006565.3	335	gGa/gAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827805	72827805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	142	529	0	ENST00000268489.5:c.8776C>T	p.Pro2926Ser	p.P2926S	ENST00000268489	NM_006885.3	2926	Ccg/Tcg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991569	72991569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	81	697	0	ENST00000268489.5:c.2476G>C	p.Glu826Gln	p.E826Q	ENST00000268489	NM_006885.3	826	Gag/Cag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41226519	41226519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	99	466	1	ENST00000357654.3:c.4504C>T	p.Pro1502Ser	p.P1502S	ENST00000357654	NM_007294.3	1502	Cca/Tca																																																																														
RNF43	54894	MSKCC	GRCh37	17	56434897	56434897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	182	517	0	ENST00000407977.2:c.2240G>A	p.Trp747Ter	p.W747*	ENST00000407977		747	tGg/tAg																																																																														
AXL	558	MSKCC	GRCh37	19	41726651	41726651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	44	466	1	ENST00000301178.4:c.196G>A	p.Glu66Lys	p.E66K	ENST00000301178	NM_021913.4	66	Gag/Aag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39284007	39284007	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	65	332	0	ENST00000402219.2:c.346G>A	p.Glu116Lys	p.E116K	ENST00000402219	NM_005633.3	116	Gag/Aag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225360586	225360586	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	52	362	0	ENST00000264414.4:c.1805del	p.Leu602Ter	p.L602*	ENST00000264414	NM_003590.4	602	tTa/ta																																																																														
NF2	4771	MSKCC	GRCh37	22	30000014	30000014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	77	260	0	ENST00000338641.4:c.27G>A	p.Met9Ile	p.M9I	ENST00000338641	NM_000268.3	9	atG/atA																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114601	73114601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	60	312	0	ENST00000356692.5:c.982G>A	p.Glu328Lys	p.E328K	ENST00000356692		328	Gaa/Aaa																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99806213	99806213	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	45	486	0	ENST00000280892.6:c.460-1G>C		p.X154_splice	ENST00000280892	NM_001130678.1	154																																																																															
DROSHA	29102	MSKCC	GRCh37	5	31410862	31410863	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	175	615	0	ENST00000344624.3:c.3657_3658delinsTT	p.Leu1220Phe	p.L1220F	ENST00000344624		1219	gaCCtt/gaTTtt																																																																														
APC	324	MSKCC	GRCh37	5	112179651	112179651	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	85	363	0	ENST00000257430.4:c.8360A>G	p.Asn2787Ser	p.N2787S	ENST00000257430	NM_000038.5	2787	aAc/aGc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673256	30673256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	121	450	0	ENST00000376406.3:c.3704C>A	p.Ser1235Tyr	p.S1235Y	ENST00000376406	NM_014641.2	1235	tCc/tAc																																																																														
CDK6	1021	MSKCC	GRCh37	7	92244475	92244476	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	94	401	2	ENST00000265734.4:c.959_960delinsTT	p.Thr320Ile	p.T320I	ENST00000265734	NM_001259.6	320	aCC/aTT																																																																														
RAD21	5885	MSKCC	GRCh37	8	117862985	117862985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	123	484	0	ENST00000297338.2:c.1492G>A	p.Glu498Lys	p.E498K	ENST00000297338	NM_006265.2	498	Gaa/Aaa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554367	141554368	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	174	624	0	ENST00000220592.5:c.1783_1784delinsAA	p.Gly595Lys	p.G595K	ENST00000220592	NM_012154.3	595	GGa/AAa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209417	98209417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	119	419	0	ENST00000331920.6:c.4121C>T	p.Ser1374Phe	p.S1374F	ENST00000331920	NM_000264.3	1374	tCt/tTt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400983	139400983	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	86	382	0	ENST00000277541.6:c.4010del	p.Pro1337LeufsTer108	p.P1337Lfs*108	ENST00000277541	NM_017617.3	1337	cCt/ct																																																																														
MED12	9968	MSKCC	GRCh37	X	70357160	70357160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	150	249	0	ENST00000374080.3:c.5675C>G	p.Ser1892Cys	p.S1892C	ENST00000374080		1892	tCt/tGt																																																																														
PGR	5241	MSKCC	GRCh37	11	100912717	100912717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	122	501	0	ENST00000325455.5:c.2605C>T	p.Arg869Cys	p.R869C	ENST00000325455	NM_001202474.3	869	Cgt/Tgt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641058	23641058	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45464991		P-0035163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	388	676	0	ENST00000261584.4:c.2417C>T	p.Pro806Leu	p.P806L	ENST00000261584	NM_024675.3	806	cCg/cTg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120675	115120676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	160	648	0	ENST00000257566.3:c.330dup	p.Glu111ArgfsTer27	p.E111Rfs*27	ENST00000257566	NM_016569.3	110	-/A																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115944	8115945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	116	404	0	ENST00000346208.3:c.1292dup	p.Pro432ThrfsTer75	p.P432Tfs*75	ENST00000346208		430	-/G																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366959	15366959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	232	697	0	ENST00000263377.2:c.1667A>G	p.Glu556Gly	p.E556G	ENST00000263377	NM_058243.2	556	gAa/gGa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123217303	123217303	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	107	559	0	ENST00000218089.9:c.2957A>G	p.Asn986Ser	p.N986S	ENST00000218089	NM_001042749.1	986	aAt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	442	805	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	560	679	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
KDR	3791	MSKCC	GRCh37	4	55961002	55961002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	321	665	2	ENST00000263923.4:c.2938G>A	p.Glu980Lys	p.E980K	ENST00000263923	NM_002253.2	980	Gag/Aag																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80343568	80343568	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	157	474	0	ENST00000286548.4:c.751A>T	p.Ser251Cys	p.S251C	ENST00000286548	NM_002072.3	251	Agc/Tgc																																																																														
FANCC	2176	MSKCC	GRCh37	9	97912356	97912356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	236	423	0	ENST00000289081.3:c.535C>T	p.Arg179Ter	p.R179*	ENST00000289081	NM_000136.2	179	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	44	491	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	43	406	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	101	486	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188188	32188188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	75	532	0	ENST00000375023.3:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000375023	NM_004557.3	385	Cgc/Tgc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911579	134911579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	98	583	0	ENST00000398015.3:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000398015	NM_004441.4	682	Cgc/Tgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	148	479	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591846	48591846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	68	560	0	ENST00000342988.3:c.1009G>A	p.Glu337Lys	p.E337K	ENST00000342988	NM_005359.5	337	Gag/Aag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119031	70119032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCAT			P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	75	622	1	ENST00000245479.2:c.604_608dup	p.Ile203MetfsTer18	p.I203Mfs*18	ENST00000245479	NM_000346.3	201	-/GCCAT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	55	347	0	ENST00000342988.3:c.1256G>C	p.Gly419Ala	p.G419A	ENST00000342988	NM_005359.5	419	gGg/gCg																																																																														
APC	324	MSKCC	GRCh37	5	112174108	112174112	+	frameshift_variant	Frame_Shift_Del	DEL	GTCGG	GTCGG	-			P-0035210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	28	328	0	ENST00000257430.4:c.2817_2821del	p.Ser940LysfsTer4	p.S940Kfs*4	ENST00000257430	NM_000038.5	939	aaGTCGGaa/aaaa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44515577	44515577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	189	565	0	ENST00000291552.4:c.319G>C	p.Asp107His	p.D107H	ENST00000291552	NM_006758.2	107	Gac/Cac																																																																														
MITF	4286	MSKCC	GRCh37	3	70014076	70014076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	125	403	2	ENST00000352241.4:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000352241	NM_198159.2	414	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	1281	633	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088700	27088700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	367	547	0	ENST00000324856.7:c.2309C>A	p.Ala770Asp	p.A770D	ENST00000324856	NM_006015.4	770	gCc/gAc																																																																														
LMO1	4004	MSKCC	GRCh37	11	8246263	8246263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	90	330	0	ENST00000335790.3:c.371G>A	p.Cys124Tyr	p.C124Y	ENST00000335790	NM_002315.2	124	tGt/tAt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497567	125497567	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	77	270	0	ENST00000428830.2:c.131G>C	p.Arg44Pro	p.R44P	ENST00000428830	NM_001114121.2	44	cGt/cCt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46298829	46298829	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	99	186	0	ENST00000334344.6:c.5476G>T	p.Glu1826Ter	p.E1826*	ENST00000334344	NM_152641.2	1826	Gaa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428235	49428235	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	208	601	0	ENST00000301067.7:c.10465C>T	p.Gln3489Ter	p.Q3489*	ENST00000301067	NM_003482.3	3489	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440152	49440152	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	342	438	0	ENST00000301067.7:c.4474C>T	p.Gln1492Ter	p.Q1492*	ENST00000301067	NM_003482.3	1492	Cag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37871774	37871774	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2804	198	517	0	ENST00000269571.5:c.1298G>C	p.Gly433Ala	p.G433A	ENST00000269571		433	gGa/gCa																																																																														
PPARG	5468	MSKCC	GRCh37	3	12447531	12447531	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	330	431	0	ENST00000287820.6:c.770C>G	p.Thr257Ser	p.T257S	ENST00000287820	NM_015869.4	257	aCc/aGc																																																																														
BTK	695	MSKCC	GRCh37	X	100625025	100625025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	148	236	0	ENST00000308731.7:c.352G>C	p.Glu118Gln	p.E118Q	ENST00000308731	NM_000061.2	118	Gaa/Caa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922049	39922049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1395	197	690	0	ENST00000378444.4:c.4123C>T	p.Arg1375Trp	p.R1375W	ENST00000378444	NM_001123385.1	1375	Cgg/Tgg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2224022	2224024	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0035213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	83	707	0	ENST00000326181.6:c.1236_1238del	p.Ser413del	p.S413del	ENST00000326181	NM_032271.2	412	ttCAGt/ttt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257731	198257731	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	137	334	0	ENST00000335508.6:c.3721A>G	p.Ile1241Val	p.I1241V	ENST00000335508	NM_012433.2	1241	Att/Gtt																																																																														
ATRX	546	MSKCC	GRCh37	X	76939369	76939369	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0035213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	245	708	0	ENST00000373344.5:c.1379C>G	p.Ser460Ter	p.S460*	ENST00000373344	NM_000489.3	460	tCa/tGa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180051003	180051003	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs307826		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	14	897	0	ENST00000261937.6:c.1480A>G	p.Thr494Ala	p.T494A	ENST00000261937	NM_182925.4	494	Acg/Gcg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178570	32178570	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17604492		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	23	767	0	ENST00000375023.3:c.2824G>A	p.Gly942Arg	p.G942R	ENST00000375023	NM_004557.3	942	Ggg/Agg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576777	212576777	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C	rs76603692		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	26	901	0	ENST00000342788.4:c.1122T>G	p.His374Gln	p.H374Q	ENST00000342788	NM_005235.2	374	caT/caG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	229	751	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143067053	143067053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61733152		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	26	1067	0	ENST00000262992.4:c.1660G>A	p.Gly554Ser	p.G554S	ENST00000262992	NM_001101669.1	554	Ggc/Agc																																																																														
HGF	3082	MSKCC	GRCh37	7	81359051	81359051	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs5745687		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	28	1063	0	ENST00000222390.5:c.910G>A	p.Glu304Lys	p.E304K	ENST00000222390	NM_000601.4	304	Gaa/Aaa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435220	18435220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201018498		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	39	1005	0	ENST00000266497.5:c.205C>T	p.Pro69Ser	p.P69S	ENST00000266497		69	Cca/Tca																																																																														
POLE	5426	MSKCC	GRCh37	12	133201381	133201381	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs73155056		P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	17	846	0	ENST00000320574.5:c.6763A>T	p.Ile2255Phe	p.I2255F	ENST00000320574	NM_006231.2	2255	Atc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579300	7579313	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGCAACTGACCG	AGGGCAACTGACCG	-			P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	109	577	0	ENST00000269305.4:c.374_375+12del		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
NF2	4771	MSKCC	GRCh37	22	30038229	30038229	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000041-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	24	1165	0	ENST00000338641.4:c.402del	p.Pro135LeufsTer39	p.P135Lfs*39	ENST00000338641	NM_000268.3	134	ccT/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	200	1029	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030323	180030323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	120	2007	0	ENST00000261937.6:c.3961C>T	p.Arg1321Trp	p.R1321W	ENST00000261937	NM_182925.4	1321	Cgg/Tgg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287461	33287461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	97	950	0	ENST00000374542.5:c.1636G>C	p.Glu546Gln	p.E546Q	ENST00000374542	NM_001141970.1	546	Gaa/Caa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153259012	153259013	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0000969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	220	1540	0	ENST00000281708.4:c.802_803delAT	p.Met268AspfsTer18	p.M268Dfs*18	ENST00000281708	NM_033632.3	268	ATg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0000991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	237	401	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175996804	175996804	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	117	272	0	ENST00000367669.3:c.1633C>G	p.Leu545Val	p.L545V	ENST00000367669	NM_022457.5	545	Cta/Gta																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98239927	98239927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	60	123	2	ENST00000331920.6:c.1405G>A	p.Val469Met	p.V469M	ENST00000331920	NM_000264.3	469	Gtg/Atg																																																																														
RET	5979	MSKCC	GRCh37	10	43596014	43596014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	77	255	0	ENST00000355710.3:c.181G>A	p.Glu61Lys	p.E61K	ENST00000355710	NM_020975.4	61	Gag/Aag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250908	99250908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	277	356	0	ENST00000268035.6:c.212G>A	p.Arg71His	p.R71H	ENST00000268035	NM_000875.3	71	cGc/cAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15973802	15973802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	30	186	0	ENST00000268712.3:c.4190C>T	p.Ser1397Phe	p.S1397F	ENST00000268712	NM_006311.3	1397	tCt/tTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			112	123	256	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19261496	19261496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	113	496	0	ENST00000162023.5:c.49C>T	p.Arg17Trp	p.R17W	ENST00000162023		17	Cgg/Tgg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439881	52439882	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0000991-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	97	261	0	ENST00000460680.1:c.830_831delAA	p.Gln277ArgfsTer6	p.Q277Rfs*6	ENST00000460680	NM_004656.3	277	cAA/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002845-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			7418	850	389	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0002845-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	261	394	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378552	25378552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002845-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			7059	810	343	0	ENST00000256078.4:c.446G>A	p.Arg149Lys	p.R149K	ENST00000256078	NM_033360.2	149	aGa/aAa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2210399	2210399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002845-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	30	239	0	ENST00000398665.3:c.1006G>A	p.Glu336Lys	p.E336K	ENST00000398665	NM_032482.2	336	Gag/Aag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546557	9546557	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002845-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			570	171	433	0	ENST00000353224.5:c.1465G>T	p.Glu489Ter	p.E489*	ENST00000353224	NM_177990.2	489	Gaa/Taa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	78	305	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629582	187629582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	118	649	1	ENST00000441802.2:c.1400C>T	p.Ala467Val	p.A467V	ENST00000441802	NM_005245.3	467	gCg/gTg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910371	29910371	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	114	728	0	ENST00000376809.5:c.41C>A	p.Ser14Ter	p.S14*	ENST00000376809	NM_002116.7	14	tCg/tAg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434396	121434396	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	21	790	0	ENST00000257555.6:c.1160A>G	p.His387Arg	p.H387R	ENST00000257555		387	cAc/cGc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29002033	29002033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	102	389	0	ENST00000282397.4:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000282397	NM_002019.4	378	Gag/Aag																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128036818	128036818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	120	617	0	ENST00000285398.2:c.1661G>A	p.Arg554Lys	p.R554K	ENST00000285398	NM_000122.1	554	aGg/aAg																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634690	158634690	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	71	416	0	ENST00000263640.3:c.496A>G	p.Thr166Ala	p.T166A	ENST00000263640	NM_001105.4	166	Act/Gct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1977	211	501	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	260	635	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12013691	12013691	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0034906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	133	368	0	ENST00000353533.5:c.634-1G>C		p.X212_splice	ENST00000353533	NM_003010.3	212																																																																															
TSC1	7248	MSKCC	GRCh37	9	135785992	135785992	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0034906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	298	653	0	ENST00000298552.3:c.1229C>G	p.Ser410Ter	p.S410*	ENST00000298552	NM_001162426.1	410	tCa/tGa																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983140	201983141	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	230	465	0	ENST00000359651.3:c.991dup	p.Arg331ProfsTer140	p.R331Pfs*140	ENST00000359651		330	agc/agCc																																																																														
PARP1	142	MSKCC	GRCh37	1	226568832	226568832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	65	733	0	ENST00000366794.5:c.1237G>C	p.Glu413Gln	p.E413Q	ENST00000366794	NM_001618.3	413	Gag/Cag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288499	15288499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	129	329	0	ENST00000263388.2:c.4240G>A	p.Gly1414Ser	p.G1414S	ENST00000263388	NM_000435.2	1414	Ggc/Agc																																																																														
EP300	2033	MSKCC	GRCh37	22	41527506	41527506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	54	514	0	ENST00000263253.7:c.1397G>C	p.Arg466Thr	p.R466T	ENST00000263253	NM_001429.3	466	aGa/aCa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932666	49932666	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	290	823	0	ENST00000296474.3:c.3205G>C	p.Glu1069Gln	p.E1069Q	ENST00000296474	NM_002447.2	1069	Gag/Cag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670478	134670478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	65	588	0	ENST00000398015.3:c.389C>T	p.Ser130Phe	p.S130F	ENST00000398015	NM_004441.4	130	tCt/tTt																																																																														
EZH2	2146	MSKCC	GRCh37	7	148524325	148524325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	31	393	0	ENST00000320356.2:c.659C>T	p.Ser220Phe	p.S220F	ENST00000320356	NM_004456.4	220	tCt/tTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995536	68995536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	68	660	0	ENST00000288368.4:c.1940G>A	p.Arg647Lys	p.R647K	ENST00000288368	NM_024870.2	647	aGa/aAa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934379	39934379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	216	541	2	ENST00000378444.4:c.220C>T	p.Arg74Cys	p.R74C	ENST00000378444	NM_001123385.1	74	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579382	7579397	+	frameshift_variant	Frame_Shift_Del	DEL	GTTTTCTGGGAAGGGA	GTTTTCTGGGAAGGGA	-			P-0034907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	577	661	0	ENST00000269305.4:c.290_305del	p.Val97AlafsTer21	p.V97Afs*21	ENST00000269305	NM_001126112.2	97	gTCCCTTCCCAGAAAACc/gc																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108206	8108206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	258	546	0	ENST00000585124.1:c.1018C>A	p.Leu340Ile	p.L340I	ENST00000585124	NM_004217.3	340	Ctt/Att																																																																														
NF1	4763	MSKCC	GRCh37	17	29657322	29657322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	158	502	0	ENST00000358273.4:c.5618C>A	p.Ala1873Asp	p.A1873D	ENST00000358273	NM_001042492.2	1873	gCc/gAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29664842	29664842	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	86	301	0	ENST00000358273.4:c.6648C>G	p.Cys2216Trp	p.C2216W	ENST00000358273	NM_001042492.2	2216	tgC/tgG																																																																														
BRCA1	672	MSKCC	GRCh37	17	41215390	41215390	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0034907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	265	468	0	ENST00000357654.3:c.5153G>A	p.Trp1718Ter	p.W1718*	ENST00000357654	NM_007294.3	1718	tGg/tAg																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197351	26197763	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	CGGTAACGGTGGGGCTTCTTCACGCCGCCGGTGGCTGGAGCGCTCTTTCGAGCAGCCTTGGTGGCCAGCTGCTTGCGTGGCGCTTTCCCACCCGTGGACTTGCGAGCAGTCTGCTTGGTACGAGCCATTGCGAACTTCTAAACCCTGCTAAATGACGAAAAAACGAAAGTCTAGCCTTTCGTACCCGTATATATAAAGACACCCCTGTTCTGATTGGACAAGGCAGCCTTTCCCCTGCAGCTCGATTGGTGGAGACGCCCACTCCCTGACAGAACATCTCCTGCATGTAGACCAAATATTAAAACTTTCCTCCGTCCATCTTTAACTGCTGGTGTTTTCAACCCTTTCCCCTCTGTGCCATGTTTCTAGCTTTTATTTAAAACGTACTTTGGTTTTCCTTGGCAAAATTGTGT	CGGTAACGGTGGGGCTTCTTCACGCCGCCGGTGGCTGGAGCGCTCTTTCGAGCAGCCTTGGTGGCCAGCTGCTTGCGTGGCGCTTTCCCACCCGTGGACTTGCGAGCAGTCTGCTTGGTACGAGCCATTGCGAACTTCTAAACCCTGCTAAATGACGAAAAAACGAAAGTCTAGCCTTTCGTACCCGTATATATAAAGACACCCCTGTTCTGATTGGACAAGGCAGCCTTTCCCCTGCAGCTCGATTGGTGGAGACGCCCACTCCCTGACAGAACATCTCCTGCATGTAGACCAAATATTAAAACTTTCCTCCGTCCATCTTTAACTGCTGGTGTTTTCAACCCTTTCCCCTCTGTGCCATGTTTCTAGCTTTTATTTAAAACGTACTTTGGTTTTCCTTGGCAAAATTGTGT	-			P-0034907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	509	128	0				ENST00000356476				1/1																																																																													
ARID1B	57492	MSKCC	GRCh37	6	157150457	157150457	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	250	505	0	ENST00000346085.5:c.1639G>T	p.Gly547Ter	p.G547*	ENST00000346085	NM_020732.3	547	Gga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	37	538	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	222	446	0	ENST00000349496.5:c.1161T>G	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaG																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344553	118344553	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	181	421	0	ENST00000534358.1:c.2679G>C	p.Arg893Ser	p.R893S	ENST00000534358	NM_005933.3	893	agG/agC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578274	7578275	+	protein_altering_variant	In_Frame_Ins	INS	-	-	CAG			P-0034912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	265	577	0	ENST00000269305.4:c.574_575insCTG	p.Gln192delinsProGlu	p.Q192delinsPE	ENST00000269305	NM_001126112.2	192	cag/cCTGag																																																																														
APC	324	MSKCC	GRCh37	5	112175793	112175793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	114	271	0	ENST00000257430.4:c.4502C>G	p.Ser1501Cys	p.S1501C	ENST00000257430	NM_000038.5	1501	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578523	7578523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	477	836	0	ENST00000269305.4:c.407A>C	p.Gln136Pro	p.Q136P	ENST00000269305	NM_001126112.2	136	cAa/cCa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0034916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	65	450	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106687	27106687	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	162	540	0	ENST00000324856.7:c.6298C>T	p.Gln2100Ter	p.Q2100*	ENST00000324856	NM_006015.4	2100	Cag/Tag																																																																														
MED12	9968	MSKCC	GRCh37	X	70338632	70338632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	107	510	1	ENST00000374080.3:c.28G>A	p.Glu10Lys	p.E10K	ENST00000374080		10	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092947	27092947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0034916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	85	278	0	ENST00000324856.7:c.2879-1G>A		p.X960_splice	ENST00000324856	NM_006015.4	960																																																																															
GATA3	2625	MSKCC	GRCh37	10	8097749	8097749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	155	562	0	ENST00000346208.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000346208		44	cCg/cTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11199700	11199700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	106	450	0	ENST00000361445.4:c.4888G>A	p.Val1630Ile	p.V1630I	ENST00000361445	NM_004958.3	1630	Gta/Ata																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860212	151860212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	116	506	0	ENST00000262189.6:c.10450C>T	p.Gln3484Ter	p.Q3484*	ENST00000262189	NM_170606.2	3484	Cag/Tag																																																																														
XIAP	331	MSKCC	GRCh37	X	123020359	123020359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	65	399	0	ENST00000355640.3:c.847C>A	p.Gln283Lys	p.Q283K	ENST00000355640		283	Cag/Aag																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804407	46804407	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0034923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	271	325	0	ENST00000290295.7:c.602-2A>C		p.X201_splice	ENST00000290295	NM_006361.5	201																																																																															
CIC	23152	MSKCC	GRCh37	19	42794430	42794431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	777	905	0	ENST00000575354.2:c.1513dup	p.His505ProfsTer9	p.H505Pfs*9	ENST00000575354	NM_015125.3	504	acc/aCcc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5029810	5029810	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	212	434	0	ENST00000381652.3:c.254T>G	p.Phe85Cys	p.F85C	ENST00000381652	NM_004972.3	85	tTt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0034925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	137	654	2	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	13	204	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	46	263	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634810	158634810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	25	230	0	ENST00000263640.3:c.376C>T	p.Leu126Phe	p.L126F	ENST00000263640	NM_001105.4	126	Ctc/Ttc																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739792	41739792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	270	533	1	ENST00000242208.4:c.181C>T	p.His61Tyr	p.H61Y	ENST00000242208	NM_002192.2	61	Cac/Tac																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0035063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	166	540	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399155	139399155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	43	421	0	ENST00000277541.6:c.4988G>A	p.Arg1663Gln	p.R1663Q	ENST00000277541	NM_017617.3	1663	cGg/cAg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115444	115115445	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0035063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	64	546	0	ENST00000257566.3:c.881_882insGT	p.Ile294MetfsTer2	p.I294Mfs*2	ENST00000257566	NM_016569.3	294	ata/atGTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916920	178916928	+	inframe_deletion	In_Frame_Del	DEL	GAACCAGTA	GAACCAGTA	-			P-0035063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	68	420	0	ENST00000263967.3:c.308_316del	p.Glu103_Val105del	p.E103_V105del	ENST00000263967	NM_006218.2	103	GAACCAGTA/-																																																																														
IRF4	3662	MSKCC	GRCh37	6	398827	398827	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	27	432	0	ENST00000380956.4:c.638-1G>T		p.X213_splice	ENST00000380956	NM_001195286.1	213																																																																															
RB1	5925	MSKCC	GRCh37	13	49033949	49033949	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	25	379	0	ENST00000267163.4:c.2086A>T	p.Arg696Ter	p.R696*	ENST00000267163	NM_000321.2	696	Aga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375274	118375274	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	27	398	0	ENST00000534358.1:c.8667T>G	p.Asn2889Lys	p.N2889K	ENST00000534358	NM_005933.3	2889	aaT/aaG																																																																														
ROS1	6098	MSKCC	GRCh37	6	117687408	117687410	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0035075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	14	359	0	ENST00000368508.3:c.2641_2643del	p.Ser881del	p.S881del	ENST00000368508	NM_002944.2	881	TCT/-																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9916143	9916143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	155	497	0	ENST00000330684.3:c.2146G>A	p.Ala716Thr	p.A716T	ENST00000330684	NM_001134407.1	716	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578474	7578474	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0035131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	333	752	0	ENST00000269305.4:c.456delG	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	152	ccG/cc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28885786	28885786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	118	441	0	ENST00000282397.4:c.3576C>A	p.Asp1192Glu	p.D1192E	ENST00000282397	NM_002019.4	1192	gaC/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	35	541	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	90	713	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PARP1	142	MSKCC	GRCh37	1	226578211	226578211	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147537486		P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	58	597	0	ENST00000366794.5:c.517C>T	p.Arg173Trp	p.R173W	ENST00000366794	NM_001618.3	173	Cgg/Tgg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230661	46230661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	112	563	0	ENST00000334344.6:c.910A>G	p.Lys304Glu	p.K304E	ENST00000334344	NM_152641.2	304	Aag/Gag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46233144	46233144	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	62	362	0	ENST00000334344.6:c.1363C>T	p.Gln455Ter	p.Q455*	ENST00000334344	NM_152641.2	455	Cag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245192	46245192	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	73	491	0	ENST00000334344.6:c.3286C>T	p.Gln1096Ter	p.Q1096*	ENST00000334344	NM_152641.2	1096	Cag/Tag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95582908	95582908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	100	486	0	ENST00000343455.3:c.1634C>T	p.Ser545Phe	p.S545F	ENST00000343455	NM_177438.2	545	tCc/tTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42005440	42005440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	65	669	0	ENST00000219905.7:c.3176C>T	p.Ser1059Phe	p.S1059F	ENST00000219905	NM_001164273.1	1059	tCc/tTc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	123	638	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189526122	189526122	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193287780		P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	57	566	0	ENST00000264731.3:c.386C>T	p.Ser129Leu	p.S129L	ENST00000264731	NM_003722.4	129	tCg/tTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55980367	55980367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	74	514	0	ENST00000263923.4:c.724C>T	p.Leu242Phe	p.L242F	ENST00000263923	NM_002253.2	242	Ctt/Ttt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	15	338	0				ENST00000310581	NM_198253.2																																																																																
DROSHA	29102	MSKCC	GRCh37	5	31526835	31526835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	71	769	0	ENST00000344624.3:c.205C>T	p.Pro69Ser	p.P69S	ENST00000344624		69	Ccc/Tcc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562448	176562448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	92	776	0	ENST00000439151.2:c.344C>T	p.Ser115Phe	p.S115F	ENST00000439151	NM_022455.4	115	tCc/tTc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562849	176562849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	68	551	1	ENST00000439151.2:c.745G>A	p.Glu249Lys	p.E249K	ENST00000439151	NM_022455.4	249	Gaa/Aaa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70964323	70964323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	34	412	0	ENST00000276594.2:c.1705G>A	p.Glu569Lys	p.E569K	ENST00000276594	NM_024504.3	569	Gaa/Aaa																																																																														
SYK	6850	MSKCC	GRCh37	9	93607806	93607806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	59	421	0	ENST00000375746.1:c.508C>T	p.His170Tyr	p.H170Y	ENST00000375746	NM_001174167.1	170	Cat/Tat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0035135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	282	509	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	170	602	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	92	356	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	57	304	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	27	705	1	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1632331	1632334	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CCGG	CCGG	-			P-0035136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	87	719	0	ENST00000344749.5:c.216_219del	p.Ser72ArgfsTer48	p.S72Rfs*48	ENST00000344749	NM_001136139.2	72	agCCGG/ag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098811	47098811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	51	715	0	ENST00000409792.3:c.6463C>T	p.Leu2155Phe	p.L2155F	ENST00000409792	NM_014159.6	2155	Ctt/Ttt																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926888	112926888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	83	586	0	ENST00000351677.2:c.1508G>T	p.Gly503Val	p.G503V	ENST00000351677	NM_002834.3	503	gGg/gTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710625	114710625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	72	425	0	ENST00000543371.1:c.110C>G	p.Ala37Gly	p.A37G	ENST00000543371	NM_001198531.1	37	gCa/gGa																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606123	81606123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	68	546	0	ENST00000298171.2:c.793C>T	p.Leu265Phe	p.L265F	ENST00000298171	NM_000369.2	265	Ctt/Ttt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95556978	95556978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	100	542	1	ENST00000343455.3:c.5626G>T	p.Gly1876Trp	p.G1876W	ENST00000343455	NM_177438.2	1876	Ggg/Tgg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89858407	89858407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	116	695	0	ENST00000389301.3:c.1153C>T	p.His385Tyr	p.H385Y	ENST00000389301	NM_000135.2	385	Cac/Tac																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161673	47161673	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	82	233	0	ENST00000409792.3:c.4453del	p.Arg1485GlufsTer30	p.R1485Efs*30	ENST00000409792	NM_014159.6	1485	Aga/ga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911406	39911406	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	126	548	0	ENST00000378444.4:c.5224G>T	p.Glu1742Ter	p.E1742*	ENST00000378444	NM_001123385.1	1742	Gag/Tag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039903	47039903	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0035139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	99	782	0	ENST00000329236.7:c.1012C>T	p.Gln338Ter	p.Q338*	ENST00000329236	NM_001204466.1	338	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0035141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	26	588	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	27	838	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17129606	17129606	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	43	734	0	ENST00000285071.4:c.280G>T	p.Gly94Ter	p.G94*	ENST00000285071	NM_144997.5	94	Gga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46231103	46231103	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	32	422	0	ENST00000334344.6:c.1024-1G>T		p.X342_splice	ENST00000334344	NM_152641.2	342																																																																															
TP53	7157	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	38	613	2	ENST00000269305.4:c.724T>A	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	Tgc/Agc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176665451	176665451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	15	482	0	ENST00000439151.2:c.4135C>G	p.Pro1379Ala	p.P1379A	ENST00000439151	NM_022455.4	1379	Ccg/Gcg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470594	25470594	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	21	651	0	ENST00000264709.3:c.880G>T	p.Glu294Ter	p.E294*	ENST00000264709	NM_175629.2	294	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099344	27099344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	17	605	0	ENST00000324856.7:c.3581G>C	p.Gly1194Ala	p.G1194A	ENST00000324856	NM_006015.4	1194	gGa/gCa																																																																														
LMO1	4004	MSKCC	GRCh37	11	8251899	8251899	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	29	663	0	ENST00000335790.3:c.178G>T	p.Glu60Ter	p.E60*	ENST00000335790	NM_002315.2	60	Gag/Tag																																																																														
MDM2	4193	MSKCC	GRCh37	12	69207402	69207402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	14	348	0	ENST00000462284.1:c.168G>C	p.Met56Ile	p.M56I	ENST00000462284	NM_002392.5	56	atG/atC																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112482	115112482	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	23	634	0	ENST00000257566.3:c.1258G>T	p.Glu420Ter	p.E420*	ENST00000257566	NM_016569.3	420	Gag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831714	72831714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	32	671	0	ENST00000268489.5:c.4867A>G	p.Lys1623Glu	p.K1623E	ENST00000268489	NM_006885.3	1623	Aag/Gag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968852	15968852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	22	581	0	ENST00000268712.3:c.4898G>C	p.Arg1633Thr	p.R1633T	ENST00000268712	NM_006311.3	1633	aGa/aCa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441516	40441516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	39	738	1	ENST00000345506.4:c.87G>T	p.Glu29Asp	p.E29D	ENST00000345506	NM_003152.3	29	gaG/gaT																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419981	41419981	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	20	522	0	ENST00000373198.4:c.340A>T	p.Arg114Trp	p.R114W	ENST00000373198	NM_133170.3	114	Agg/Tgg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713335	30713335	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	29	442	0	ENST00000359013.4:c.736del	p.Glu246LysfsTer43	p.E246Kfs*43	ENST00000359013	NM_001024847.2	245	ctG/ct																																																																														
CCND3	896	MSKCC	GRCh37	6	41903760	41903760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142862109		P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	18	620	0	ENST00000372991.4:c.797C>T	p.Ala266Val	p.A266V	ENST00000372991	NM_001760.3	266	gCg/gTg																																																																														
MET	4233	MSKCC	GRCh37	7	116340184	116340184	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	36	329	1	ENST00000397752.3:c.1046G>T	p.Ser349Ile	p.S349I	ENST00000397752	NM_000245.2	349	aGc/aTc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70978544	70978544	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	21	570	0	ENST00000276594.2:c.1109A>T	p.Tyr370Phe	p.Y370F	ENST00000276594	NM_024504.3	370	tAt/tTt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139391352	139391352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	13	706	0	ENST00000277541.6:c.6839C>G	p.Ser2280Cys	p.S2280C	ENST00000277541	NM_017617.3	2280	tCt/tGt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63413096	63413096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	25	378	0	ENST00000330258.3:c.71C>T	p.Thr24Ile	p.T24I	ENST00000330258	NM_152424.3	24	aCa/aTa																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944836	31944836	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148314204		P-0035174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	131	738	0	ENST00000340398.3:c.265G>A	p.Val89Ile	p.V89I	ENST00000340398	NM_001013699.2	89	Gtc/Atc																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222212	2222212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	145	643	0	ENST00000326181.6:c.496G>A	p.Val166Ile	p.V166I	ENST00000326181	NM_032271.2	166	Gtc/Atc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139794948	139794948	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	266	573	0	ENST00000247668.2:c.342G>A	p.Trp114Ter	p.W114*	ENST00000247668	NM_021138.3	114	tgG/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	64	421	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690802	89690802	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0035178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	37	290	0	ENST00000371953.3:c.210-1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023177	27023178	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0035178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	12	54	0	ENST00000324856.7:c.287_288dup	p.Glu97ArgfsTer5	p.E97Rfs*5	ENST00000324856	NM_006015.4	95	ggc/gGCgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216639	36216639	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	59	569	0	ENST00000222270.7:c.3805G>T	p.Glu1269Ter	p.E1269*	ENST00000222270	NM_014727.1	1269	Gag/Tag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0035179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	162	572	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	240	594	0	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123171455	123171455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	76	249	0	ENST00000218089.9:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000218089	NM_001042749.1	123	Cag/Tag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89838145	89838145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	286	643	0	ENST00000389301.3:c.2092G>A	p.Glu698Lys	p.E698K	ENST00000389301	NM_000135.2	698	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438647	49438647	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	308	721	0	ENST00000301067.7:c.4843C>T	p.Arg1615Ter	p.R1615*	ENST00000301067	NM_003482.3	1615	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944608	40944608	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	156	313	1	ENST00000373198.4:c.1894C>T	p.Arg632Ter	p.R632*	ENST00000373198	NM_133170.3	632	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120483332	120483332	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	56	355	0	ENST00000256646.2:c.3029C>G	p.Ser1010Cys	p.S1010C	ENST00000256646	NM_024408.3	1010	tCt/tGt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150022942	150022943	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGTGGATTAACTTCTGTGGATTTGTGGATTAACTTC			P-0035179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	128	565	0	ENST00000253339.5:c.320_321insGAAGTTAATCCACAAATCCACAGAAGTTAATCCACAA	p.Asp108LysfsTer20	p.D108Kfs*20	ENST00000253339		107	caa/caGAAGTTAATCCACAAATCCACAGAAGTTAATCCACAAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874525	151874526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAA			P-0035179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	238	442	0	ENST00000262189.6:c.8012_8013insTTGT	p.Ser2672CysfsTer3	p.S2672Cfs*3	ENST00000262189	NM_170606.2	2671	acg/acTTGTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	34	522	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	42	305	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	46	213	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578456	7578457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGACGCGGGTGC			P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	159	719	0	ENST00000269305.4:c.461_473dup	p.Ala159HisfsTer26	p.A159Hfs*26	ENST00000269305	NM_001126112.2	158	cgc/cgGCACCCGCGTCCGc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166782	32166782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	200	644	1	ENST00000375023.3:c.4456G>T	p.Gly1486Cys	p.G1486C	ENST00000375023	NM_004557.3	1486	Ggt/Tgt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099587	157099588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	26	68	0	ENST00000346085.5:c.527dup	p.Pro177AlafsTer55	p.P177Afs*55	ENST00000346085	NM_020732.3	175	ggc/ggCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578473	7578473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	22	751	1	ENST00000269305.4:c.457C>T	p.Pro153Ser	p.P153S	ENST00000269305	NM_001126112.2	153	Ccc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	29	420	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1451	83	728	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	77	505	0	ENST00000304494.5:c.242C>G	p.Pro81Arg	p.P81R	ENST00000304494	NM_000077.4	81	cCc/cGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	77	505	0	ENST00000304494.5:c.242C>G	p.Pro81Arg	p.P81R	ENST00000304494	NM_000077.4	81	cCc/cGc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082216	16082216	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1643	113	877	0	ENST00000281043.3:c.32del	p.Gly11AlafsTer2	p.G11Afs*2	ENST00000281043	NM_005378.4	10	ccG/cc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702367	47702367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	38	281	0	ENST00000233146.2:c.1963G>A	p.Val655Ile	p.V655I	ENST00000233146	NM_000251.2	655	Gta/Ata																																																																														
MSI1	4440	MSKCC	GRCh37	12	120794713	120794713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	133	495	0	ENST00000257552.2:c.644G>A	p.Gly215Asp	p.G215D	ENST00000257552	NM_002442.3	215	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579557	7579558	+	frameshift_variant	Frame_Shift_Ins	INS	TC	TC	AAA			P-0034934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	228	602	2	ENST00000269305.4:c.129_130delinsTTT	p.Leu43PhefsTer9	p.L43Ffs*9	ENST00000269305	NM_001126112.2	43	ttGAtg/ttTTTtg																																																																														
SMO	6608	MSKCC	GRCh37	7	128850297	128850297	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	58	644	0	ENST00000249373.3:c.1560del	p.Asn521ThrfsTer12	p.N521Tfs*12	ENST00000249373	NM_005631.4	520	atC/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0034939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	443	417	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	299	548	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	307	564	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	307	564	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	307	564	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528741	8528741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	134	277	0	ENST00000356435.5:c.391G>A	p.Gly131Ser	p.G131S	ENST00000356435		131	Ggc/Agc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151848528	151848528	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0034939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	121	250	0	ENST00000262189.6:c.12665del	p.Lys4222ArgfsTer10	p.K4222Rfs*10	ENST00000262189	NM_170606.2	4222	aAg/ag																																																																														
HRAS	3265	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	71	678	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0034969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	69	264	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	190	526	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	99	684	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	14	527	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	87	575	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	63	389	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129399	2129399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	120	611	0	ENST00000219476.3:c.3254C>T	p.Ser1085Leu	p.S1085L	ENST00000219476	NM_000548.3	1085	tCg/tTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216476	36216476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	396	935	1	ENST00000222270.7:c.3739C>T	p.Arg1247Cys	p.R1247C	ENST00000222270	NM_014727.1	1247	Cgt/Tgt																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66518973	66518973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	78	425	0	ENST00000358598.2:c.254C>G	p.Pro85Arg	p.P85R	ENST00000358598	NM_212471.2	85	cCt/cGt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120214	70120215	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ACTA			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	144	626	0	ENST00000245479.2:c.1217_1220dupACTA	p.Tyr407Ter	p.Y407*	ENST00000245479	NM_000346.3	406	cac/cACTAac																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932788	49932788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	123	833	0	ENST00000296474.3:c.3083G>T	p.Gly1028Val	p.G1028V	ENST00000296474	NM_002447.2	1028	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175799	112175799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	67	338	0	ENST00000257430.4:c.4508del	p.Ser1503TyrfsTer4	p.S1503Yfs*4	ENST00000257430	NM_000038.5	1503	tCa/ta																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910657	29910676	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGAGGATGGAGCCGCGG	GCCAGAGGATGGAGCCGCGG	-			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	43	1050	0	ENST00000376809.5:c.199_218del	p.Gln67AlafsTer25	p.Q67Afs*25	ENST00000376809	NM_002116.7	66	aGCCAGAGGATGGAGCCGCGG/a																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528740	8528740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	69	455	0	ENST00000356435.5:c.392G>A	p.Gly131Asp	p.G131D	ENST00000356435		131	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576917	7576917	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	448	626	0	ENST00000269305.4:c.929del	p.Asn310ThrfsTer35	p.N310Tfs*35	ENST00000269305	NM_001126112.2	310	aAc/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	224	594	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0035027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	199	379	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0035027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	85	435	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625434	69625434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	186	899	3	ENST00000334134.2:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000334134	NM_005247.2	120	cGg/cAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46240655	46240656	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	T			P-0035027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	82	436	0	ENST00000334344.6:c.1515_1516delinsT	p.Ala506ArgfsTer10	p.A506Rfs*10	ENST00000334344	NM_152641.2	505	gtAGcg/gtTcg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	116	492	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	48	308	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	48	308	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0035029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	227	880	0	ENST00000269305.4:c.376T>A	p.Tyr126Asn	p.Y126N	ENST00000269305	NM_001126112.2	126	Tac/Aac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341328	89341328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	105	494	0	ENST00000301030.4:c.7607G>A	p.Arg2536Gln	p.R2536Q	ENST00000301030	NM_001256183.1	2536	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0035034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	80	356	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	44	187	0				ENST00000310581	NM_198253.2																																																																																
RBM10	8241	MSKCC	GRCh37	X	47034446	47034447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	197	484	0	ENST00000329236.7:c.303dup	p.Ser102Ter	p.S102*	ENST00000329236	NM_001204466.1	100	-/T																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	149	277	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0034859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	304	447	1	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0034859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	89	220	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0034859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	89	220	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44870205	44870205	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0034859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	128	196	0	ENST00000377967.4:c.385-1G>T		p.X129_splice	ENST00000377967	NM_021140.2	129																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71941240	71941240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	38	468	0	ENST00000298229.2:c.1015G>C	p.Glu339Gln	p.E339Q	ENST00000298229	NM_001567.3	339	Gag/Cag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	463358	463358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	66	233	0	ENST00000399788.2:c.913G>T	p.Glu305Ter	p.E305*	ENST00000399788	NM_001042603.1	305	Gaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133250252	133250252	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	71	442	0	ENST00000320574.5:c.1268A>T	p.Asn423Ile	p.N423I	ENST00000320574	NM_006231.2	423	aAt/aTt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43700140	43700140	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	72	269	0	ENST00000382044.4:c.5746+1G>A		p.X1916_splice	ENST00000382044	NM_001141980.1	1916																																																																															
ANKRD11	29123	MSKCC	GRCh37	16	89351098	89351098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140370885		P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	34	506	0	ENST00000301030.4:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000301030	NM_001256183.1	618	Gct/Act																																																																														
NF1	4763	MSKCC	GRCh37	17	29490265	29490288	+	inframe_deletion	In_Frame_Del	DEL	TCTGCCATTTTCTTCACACCTGTC	TCTGCCATTTTCTTCACACCTGTC	-			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	215	308	0	ENST00000358273.4:c.350_373del	p.Ile117_Arg125delinsSer	p.I117_R125delinsS	ENST00000358273	NM_001042492.2	117	aTCTGCCATTTTCTTCACACCTGTCgt/agt																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45391478	45391478	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	46	253	0	ENST00000262160.6:c.682G>T	p.Glu228Ter	p.E228*	ENST00000262160	NM_005901.5	228	Gaa/Taa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39239469	39239469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	92	280	0	ENST00000402219.2:c.2188G>T	p.Val730Phe	p.V730F	ENST00000402219	NM_005633.3	730	Gtt/Ttt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40911143	40911143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	46	265	0	ENST00000373198.4:c.2162G>A	p.Arg721His	p.R721H	ENST00000373198	NM_133170.3	721	cGt/cAt																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130419	29130419	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	35	414	0	ENST00000328354.6:c.291G>C	p.Trp97Cys	p.W97C	ENST00000328354	NM_007194.3	97	tgG/tgC																																																																														
TERT	7015	MSKCC	GRCh37	5	1294283	1294283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	90	526	1	ENST00000310581.5:c.718C>T	p.Arg240Cys	p.R240C	ENST00000310581	NM_198253.2	240	Cgt/Tgt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564516	86564517	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	84	379	0	ENST00000274376.6:c.248_249insT	p.Ala84SerfsTer28	p.A84Sfs*28	ENST00000274376	NM_002890.2	83	gga/ggTa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001305	150001305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	41	391	0	ENST00000253339.5:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000253339		767	Cgt/Tgt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2949773	2949773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	80	406	0	ENST00000396946.4:c.3171del	p.Ile1058SerfsTer7	p.I1058Sfs*7	ENST00000396946	NM_032415.4	1057	ggG/gg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026409	6026409	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	35	250	0	ENST00000265849.7:c.1987G>T	p.Glu663Ter	p.E663*	ENST00000265849	NM_000535.5	663	Gaa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55225388	55225388	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	48	356	0	ENST00000275493.2:c.1240A>G	p.Arg414Gly	p.R414G	ENST00000275493	NM_005228.3	414	Agg/Ggg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465651	8465651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	72	305	0	ENST00000356435.5:c.3529C>A	p.Arg1177Ser	p.R1177S	ENST00000356435		1177	Cgc/Agc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034465	47034465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	53	535	0	ENST00000329236.7:c.319G>T	p.Ala107Ser	p.A107S	ENST00000329236	NM_001204466.1	107	Gct/Tct																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227970	53227970	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	37	441	1	ENST00000375401.3:c.2344G>T	p.Glu782Ter	p.E782*	ENST00000375401	NM_004187.3	782	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	15	667	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45872380	45872380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	39	665	1	ENST00000391945.4:c.131C>T	p.Ser44Leu	p.S44L	ENST00000391945	NM_000400.3	44	tCa/tTa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89880961	89880961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	14	464	0	ENST00000389301.3:c.250G>A	p.Glu84Lys	p.E84K	ENST00000389301	NM_000135.2	84	Gag/Aag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37863341	37863341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	22	698	0	ENST00000269571.5:c.172G>A	p.Gly58Arg	p.G58R	ENST00000269571		58	Gga/Aga																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156845902	156845902	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	25	745	0	ENST00000524377.1:c.1532T>A	p.Val511Glu	p.V511E	ENST00000524377	NM_002529.3	511	gTg/gAg																																																																														
PGR	5241	MSKCC	GRCh37	11	100999371	100999371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	12	809	1	ENST00000325455.5:c.431G>T	p.Gly144Val	p.G144V	ENST00000325455	NM_001202474.3	144	gGc/gTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48955530	48955554	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTAGAACGATGTGAACATCGAAT	ATTTAGAACGATGTGAACATCGAAT	CCA			P-0034982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	19	321	1	ENST00000267163.4:c.1646_1670delinsCCA	p.His549ProfsTer55	p.H549Pfs*55	ENST00000267163	NM_000321.2	549	cATTTAGAACGATGTGAACATCGAATc/cCCAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	116	477	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0034992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	57	283	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	121	462	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953369	17953369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	134	653	0	ENST00000458235.1:c.617G>A	p.Ser206Asn	p.S206N	ENST00000458235	NM_000215.3	206	aGc/aAc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250350	110250358	+	frameshift_variant	Frame_Shift_Del	DEL	GAATAAAGT	GAATAAAGT	AAAAAAGG			P-0034992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	131	635	3	ENST00000374672.4:c.317_325delinsCCTTTTTT	p.Asp106AlafsTer8	p.D106Afs*8	ENST00000374672	NM_004235.4	106	gACTTTATTCtc/gCCTTTTTTtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	372	472	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600392	10600392	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	402	759	1	ENST00000171111.5:c.1463A>T	p.Glu488Val	p.E488V	ENST00000171111	NM_203500.1	488	gAg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087358	27087363	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAAT	TTCAAT	CGTG			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	132	457	1	ENST00000324856.7:c.1932_1937delinsCGTG	p.Ser645ValfsTer3	p.S645Vfs*3	ENST00000324856	NM_006015.4	644	ggTTCAATa/ggCGTGa																																																																														
WT1	7490	MSKCC	GRCh37	11	32449546	32449546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	123	573	0	ENST00000332351.3:c.828C>G	p.Ser276Arg	p.S276R	ENST00000332351	NM_024426.4	276	agC/agG																																																																														
ATM	472	MSKCC	GRCh37	11	108235836	108235836	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	221	428	0	ENST00000278616.4:c.8878T>G	p.Trp2960Gly	p.W2960G	ENST00000278616	NM_000051.3	2960	Tgg/Ggg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118355592	118355592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	269	499	0	ENST00000534358.1:c.4234G>A	p.Glu1412Lys	p.E1412K	ENST00000534358	NM_005933.3	1412	Gaa/Aaa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435415	110435415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	216	424	0	ENST00000375856.3:c.2986G>T	p.Gly996Cys	p.G996C	ENST00000375856	NM_003749.2	996	Ggc/Tgc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560224	95560225	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	71	214	0	ENST00000343455.3:c.5364_5364+1delinsTT		p.X1788_splice	ENST00000343455	NM_177438.2	1788																																																																															
ERCC4	2072	MSKCC	GRCh37	16	14041861	14041861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	91	340	0	ENST00000311895.7:c.2408G>T	p.Cys803Phe	p.C803F	ENST00000311895	NM_005236.2	803	tGc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29527613	29527613	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	92	462	0	ENST00000358273.4:c.1062G>C	p.Lys354Asn	p.K354N	ENST00000358273	NM_001042492.2	354	aaG/aaC																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99149845	99149845	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	165	312	0	ENST00000074304.5:c.157A>T	p.Ser53Cys	p.S53C	ENST00000074304	NM_001134224.1	53	Agt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480437	89480438	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	175	326	0	ENST00000336596.2:c.2274_2275del	p.Leu758PhefsTer3	p.L758Ffs*3	ENST00000336596	NM_005233.5	758	ttGGtg/tttg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134911563	134911563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	124	452	0	ENST00000398015.3:c.2028C>A	p.Asp676Glu	p.D676E	ENST00000398015	NM_004441.4	676	gaC/gaA																																																																														
PARK2	5071	MSKCC	GRCh37	6	161969937	161969937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	219	433	0	ENST00000366898.1:c.1032G>C	p.Glu344Asp	p.E344D	ENST00000366898	NM_004562.2	344	gaG/gaC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55229299	55229299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	219	432	2	ENST00000275493.2:c.1606G>T	p.Val536Leu	p.V536L	ENST00000275493	NM_005228.3	536	Gtg/Ttg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508823	106508823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	146	407	0	ENST00000359195.3:c.817C>A	p.Arg273Ser	p.R273S	ENST00000359195	NM_002649.2	273	Cgc/Agc																																																																														
MET	4233	MSKCC	GRCh37	7	116411659	116411659	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	364	703	0	ENST00000397752.3:c.2838del	p.Leu946PhefsTer10	p.L946Ffs*10	ENST00000397752	NM_000245.2	946	ttA/tt																																																																														
SMO	6608	MSKCC	GRCh37	7	128852087	128852087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	329	599	0	ENST00000249373.3:c.2159G>A	p.Gly720Glu	p.G720E	ENST00000249373	NM_005631.4	720	gGa/gAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949766	151949766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	98	427	0	ENST00000262189.6:c.1334C>T	p.Ser445Phe	p.S445F	ENST00000262189	NM_170606.2	445	tCt/tTt																																																																														
LYN	4067	MSKCC	GRCh37	8	56863339	56863339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	147	276	0	ENST00000519728.1:c.486del	p.Gly163GlufsTer45	p.G163Efs*45	ENST00000519728	NM_002350.3	161	ttA/tt																																																																														
NBN	4683	MSKCC	GRCh37	8	90992995	90992995	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	236	439	0	ENST00000265433.3:c.447C>G	p.His149Gln	p.H149Q	ENST00000265433	NM_002485.4	149	caC/caG																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864210	117864210	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	229	515	0	ENST00000297338.2:c.1447del	p.Ile483LeufsTer6	p.I483Lfs*6	ENST00000297338	NM_006265.2	483	Att/tt																																																																														
ABL1	25	MSKCC	GRCh37	9	133738291	133738291	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	230	409	0	ENST00000318560.5:c.691A>G	p.Asn231Asp	p.N231D	ENST00000318560	NM_005157.4	231	Aac/Gac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	237	390	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988426	36988426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	140	258	1	ENST00000354822.5:c.227C>T	p.Ala76Val	p.A76V	ENST00000354822	NM_001079668.2	76	gCg/gTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212474	5212474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	69	447	1	ENST00000357368.4:c.4643G>A	p.Arg1548His	p.R1548H	ENST00000357368	NM_002850.3	1548	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	267	379	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176145058	176145058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	156	226	0	ENST00000367669.3:c.553C>T	p.Pro185Ser	p.P185S	ENST00000367669	NM_022457.5	185	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427299	49427341	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGCATACGTTGCTGCTGCAGCTGCAGCTGCCTTTCCTGTA	AGCTGCATACGTTGCTGCTGCAGCTGCAGCTGCCTTTCCTGTA	-			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	150	365	0	ENST00000301067.7:c.11147_11189del	p.Leu3716TrpfsTer19	p.L3716Wfs*19	ENST00000301067	NM_003482.3	3716	tTACAGGAAAGGCAGCTGCAGCTGCAGCAGCAACGTATGCAGCTg/tg																																																																														
AKT1	207	MSKCC	GRCh37	14	105236690	105236690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	177	412	0	ENST00000349310.3:c.1431C>A	p.Ser477Arg	p.S477R	ENST00000349310	NM_001014432.1	477	agC/agA																																																																														
EZH1	2145	MSKCC	GRCh37	17	40855772	40855772	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	223	374	0	ENST00000428826.2:c.2084A>C	p.Asn695Thr	p.N695T	ENST00000428826		695	aAc/aCc																																																																														
ATR	545	MSKCC	GRCh37	3	142275285	142275285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	195	315	0	ENST00000350721.4:c.2018G>C	p.Ser673Thr	p.S673T	ENST00000350721	NM_001184.3	673	aGt/aCt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	145	302	0	ENST00000304494.5:c.235_236delAC	p.Thr79ProfsTer40	p.T79Pfs*40	ENST00000304494	NM_000077.4	79	ACc/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	145	302	0	ENST00000304494.5:c.235_236delAC	p.Thr79ProfsTer40	p.T79Pfs*40	ENST00000304494	NM_000077.4	79	ACc/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	145	302	0	ENST00000304494.5:c.235_236delAC	p.Thr79ProfsTer40	p.T79Pfs*40	ENST00000304494	NM_000077.4	79	ACc/c																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650569	48650569	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0035009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	161	212	0	ENST00000376670.3:c.539T>C	p.Leu180Pro	p.L180P	ENST00000376670	NM_002049.3	180	cTc/cCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	973	331	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602354	10602354	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	169	713	0	ENST00000171111.5:c.1224del	p.Met409Ter	p.M409*	ENST00000171111	NM_203500.1	408	ccC/cc																																																																														
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	169	683	1	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag																																																																														
CIC	23152	MSKCC	GRCh37	19	42795382	42795382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	115	529	1	ENST00000575354.2:c.2462G>A	p.Gly821Glu	p.G821E	ENST00000575354	NM_015125.3	821	gGa/gAa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851249	63851249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	66	552	0	ENST00000279873.7:c.2027C>T	p.Pro676Leu	p.P676L	ENST00000279873	NM_032199.2	676	cCc/cTc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549097	21549097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	59	482	0	ENST00000382592.4:c.3179G>T	p.Gly1060Val	p.G1060V	ENST00000382592	NM_014572.2	1060	gGa/gTa																																																																														
MGA	23269	MSKCC	GRCh37	15	42000020	42000020	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	140	431	0	ENST00000219905.7:c.2287del	p.Trp763GlyfsTer54	p.W763Gfs*54	ENST00000219905	NM_001164273.1	761	ccT/cc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144106	11144106	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	170	686	0	ENST00000344626.4:c.3687C>G	p.Ile1229Met	p.I1229M	ENST00000344626	NM_003072.3	1229	atC/atG																																																																														
KDR	3791	MSKCC	GRCh37	4	55972103	55972103	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	80	375	0	ENST00000263923.4:c.1541T>A	p.Val514Glu	p.V514E	ENST00000263923	NM_002253.2	514	gTa/gAa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555033	106555033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	67	459	0	ENST00000369096.4:c.2150G>T	p.Gly717Val	p.G717V	ENST00000369096	NM_001198.3	717	gGg/gTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69104012	69104012	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	80	267	1	ENST00000288368.4:c.4402T>A	p.Tyr1468Asn	p.Y1468N	ENST00000288368	NM_024870.2	1468	Tat/Aat																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463296	25463297	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	T			P-0035013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	105	387	0	ENST00000264709.3:c.2196_2197delinsA	p.Phe732LeufsTer47	p.F732Lfs*47	ENST00000264709	NM_175629.2	732	ttTGag/ttAag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0035017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	179	361	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	396	493	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	109	381	1	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175758	112175765	+	frameshift_variant	Frame_Shift_Del	DEL	ACATTTTG	ACATTTTG	-			P-0035017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	54	274	0	ENST00000257430.4:c.4467_4474del	p.Leu1489PhefsTer22	p.L1489Ffs*22	ENST00000257430	NM_000038.5	1489	ttACATTTTGcc/ttcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0035021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	72	313	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0035076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	29	188	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	74	274	1	ENST00000263967.3:c.1034A>C	p.Asn345Thr	p.N345T	ENST00000263967	NM_006218.2	345	aAt/aCt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10265605	10265605	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0035076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	137	545	0	ENST00000340748.4:c.1572T>A	p.Tyr524Ter	p.Y524*	ENST00000340748		524	taT/taA																																																																														
MSH6	2956	MSKCC	GRCh37	2	48010467	48010467	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0035076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	26	333	0	ENST00000234420.5:c.95G>C	p.Gly32Ala	p.G32A	ENST00000234420	NM_000179.2	32	gGc/gCc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442078	52442078	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0035076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	173	413	0	ENST00000460680.1:c.271del	p.Cys91ValfsTer7	p.C91Vfs*7	ENST00000460680	NM_004656.3	91	Tgt/gt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524339	176524339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	78	752	0	ENST00000292408.4:c.2200C>A	p.Pro734Thr	p.P734T	ENST00000292408	NM_213647.1	734	Cct/Act																																																																														
TAP1	6890	MSKCC	GRCh37	6	32816578	32816578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0035076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	70	739	1	ENST00000354258.4:c.1597G>T	p.Gly533Cys	p.G533C	ENST00000354258	NM_000593.5	533	Ggc/Tgc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976789	2976789	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs79513324		P-0035076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	188	871	1	ENST00000396946.4:c.1223G>T	p.Arg408Leu	p.R408L	ENST00000396946	NM_032415.4	408	cGc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	322	588	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101195	27101195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	448	562	0	ENST00000324856.7:c.4477C>T	p.Gln1493Ter	p.Q1493*	ENST00000324856	NM_006015.4	1493	Cag/Tag																																																																														
WT1	7490	MSKCC	GRCh37	11	32414221	32414221	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	71	405	0	ENST00000332351.3:c.1330A>T	p.Arg444Ter	p.R444*	ENST00000332351	NM_024426.4	444	Aga/Tga																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94179021	94179021	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	79	417	0	ENST00000323929.3:c.1822T>G	p.Ser608Ala	p.S608A	ENST00000323929	NM_005591.3	608	Tca/Gca																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707812	43707812	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	118	750	0	ENST00000382044.4:c.5069A>C	p.Lys1690Thr	p.K1690T	ENST00000382044	NM_001141980.1	1690	aAg/aCg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250899	99250899	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	108	420	0	ENST00000268035.6:c.203A>G	p.Glu68Gly	p.E68G	ENST00000268035	NM_000875.3	68	gAg/gGg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858295	9858295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	160	425	0	ENST00000330684.3:c.3106G>A	p.Glu1036Lys	p.E1036K	ENST00000330684	NM_001134407.1	1036	Gag/Aag																																																																														
SOS1	6654	MSKCC	GRCh37	2	39241963	39241963	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	61	337	0	ENST00000402219.2:c.1883T>C	p.Leu628Pro	p.L628P	ENST00000402219	NM_005633.3	628	cTt/cCt																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872813	136872813	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	74	347	0	ENST00000241393.3:c.685T>G	p.Ser229Ala	p.S229A	ENST00000241393	NM_003467.2	229	Tcc/Gcc																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31395695	31395695	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	65	431	0	ENST00000328111.2:c.2548T>G	p.Phe850Val	p.F850V	ENST00000328111	NM_006892.3	850	Ttt/Gtt																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287187	33287187	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1282	90	526	0	ENST00000374542.5:c.1910A>C	p.Lys637Thr	p.K637T	ENST00000374542	NM_001141970.1	637	aAg/aCg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979547	2979547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	99	476	0	ENST00000396946.4:c.700C>T	p.His234Tyr	p.H234Y	ENST00000396946	NM_032415.4	234	Cac/Tac																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739653	41739653	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	139	617	0	ENST00000242208.4:c.320T>C	p.Ile107Thr	p.I107T	ENST00000242208	NM_002192.2	107	aTt/aCt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468276	50468276	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	102	485	0	ENST00000331340.3:c.1511A>G	p.Glu504Gly	p.E504G	ENST00000331340	NM_006060.4	504	gAg/gGg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106519995	106519995	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	29	197	0	ENST00000359195.3:c.2423A>C	p.Lys808Thr	p.K808T	ENST00000359195	NM_002649.2	808	aAa/aCa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226010	53226010	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0035077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	163	368	0	ENST00000375401.3:c.2839T>G	p.Leu947Val	p.L947V	ENST00000375401	NM_004187.3	947	Ttg/Gtg																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204992	128204992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0035082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	55	628	0	ENST00000341105.2:c.449G>A	p.Gly150Glu	p.G150E	ENST00000341105	NM_032638.4	150	gGa/gAa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31493381	31493381	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	26	308	0	ENST00000344624.3:c.1775T>C	p.Ile592Thr	p.I592T	ENST00000344624		592	aTa/aCa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526755	31526755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0035085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	11	536	0	ENST00000344624.3:c.285del	p.Cys96AlafsTer12	p.C96Afs*12	ENST00000344624		95	ccC/cc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782612	9782612	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0035085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	15	440	0	ENST00000377346.4:c.2374C>T	p.Gln792Ter	p.Q792*	ENST00000377346	NM_005026.3	792	Cag/Tag																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115272932	115272933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0035085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	11	559	0	ENST00000438362.2:c.1440dup	p.Glu481ArgfsTer8	p.E481Rfs*8	ENST00000438362	NM_001242891.1	480	-/A																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446827	49446827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	10	400	0	ENST00000301067.7:c.983C>T	p.Ala328Val	p.A328V	ENST00000301067	NM_003482.3	328	gCg/gTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610403	10610403	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	14	550	0	ENST00000171111.5:c.307T>C	p.Ser103Pro	p.S103P	ENST00000171111	NM_203500.1	103	Tcc/Ccc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540560	187540560	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0035085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	10	282	0	ENST00000441802.2:c.7180A>T	p.Ile2394Phe	p.I2394F	ENST00000441802	NM_005245.3	2394	Att/Ttt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0035086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	153	444	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0035086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	19	127	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
MED12	9968	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0035086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	16	521	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952088	178952088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	35	286	0	ENST00000263967.3:c.3143A>G	p.His1048Arg	p.H1048R	ENST00000263967	NM_006218.2	1048	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685270	89685271	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0035086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	32	49	0	ENST00000371953.3:c.170dup	p.Leu57PhefsTer6	p.L57Ffs*6	ENST00000371953	NM_000314.4	55	-/T																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280139	66280139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0035086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	41	286	0	ENST00000273854.3:c.1550T>C	p.Ile517Thr	p.I517T	ENST00000273854	NM_004439.5	517	aTt/aCt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176637416	176637417	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0035086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	37	388	0	ENST00000439151.2:c.2019_2020del	p.Asn674HisfsTer8	p.N674Hfs*8	ENST00000439151	NM_022455.4	672	acAGag/acag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176719059	176719059	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0035086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	36	260	0	ENST00000439151.2:c.6366del	p.Phe2122LeufsTer28	p.F2122Lfs*28	ENST00000439151	NM_022455.4	2121	tgT/tg																																																																														
LATS1	9113	MSKCC	GRCh37	6	149997757	149997757	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0035086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	52	421	2	ENST00000253339.5:c.2710C>T	p.Arg904Ter	p.R904*	ENST00000253339		904	Cga/Tga																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0032213-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	138	489	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772958	135772958	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032213-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			50	198	365	1	ENST00000298552.3:c.2665G>T	p.Glu889Ter	p.E889*	ENST00000298552	NM_001162426.1	889	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108175440	108175440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032213-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	47	409	0	ENST00000278616.4:c.5535G>T	p.Leu1845Phe	p.L1845F	ENST00000278616	NM_000051.3	1845	ttG/ttT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015350-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	413	513	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0015350-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			172	620	382	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0015350-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			224	151	527	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0017690-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			689	212	751	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TET1	80312	MSKCC	GRCh37	10	70412313	70412313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017690-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			516	93	387	0	ENST00000373644.4:c.4423G>A	p.Glu1475Lys	p.E1475K	ENST00000373644	NM_030625.2	1475	Gaa/Aaa																																																																														
YAP1	10413	MSKCC	GRCh37	11	102094471	102094471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017690-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			527	55	493	0	ENST00000282441.5:c.1151C>T	p.Pro384Leu	p.P384L	ENST00000282441	NM_001130145.2	384	cCt/cTt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164889	36164889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017690-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			665	45	573	1	ENST00000300305.3:c.986C>T	p.Ala329Val	p.A329V	ENST00000300305		329	gCg/gTg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52436681	52436681	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017690-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			533	154	594	1	ENST00000460680.1:c.1993C>T	p.Gln665Ter	p.Q665*	ENST00000460680	NM_004656.3	665	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017690-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			207	56	232	0				ENST00000310581	NM_198253.2																																																																																
IL7R	3575	MSKCC	GRCh37	5	35874562	35874562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017690-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			680	113	596	0	ENST00000303115.3:c.718C>T	p.Pro240Ser	p.P240S	ENST00000303115	NM_002185.3	240	Cct/Tct																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868900	117868900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017690-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			520	126	425	2	ENST00000297338.2:c.799G>A	p.Asp267Asn	p.D267N	ENST00000297338	NM_006265.2	267	Gat/Aat																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017690-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			454	31	426	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
AR	367	MSKCC	GRCh37	X	66931514	66931514	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017690-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			338	35	262	2	ENST00000374690.3:c.2156G>A	p.Trp719Ter	p.W719*	ENST00000374690	NM_000044.3	719	tGg/tAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	280	611	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	160	654	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	50	201	6	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	168	776	3	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	110	575	1	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	28	325	4	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	98	415	2	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87636203	87636203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	96	392	1	ENST00000277120.3:c.2368C>T	p.Arg790Ter	p.R790*	ENST00000277120		790	Cga/Tga																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500579	99500579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34102392		P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	109	427	2	ENST00000268035.6:c.4012G>A	p.Ala1338Thr	p.A1338T	ENST00000268035	NM_000875.3	1338	Gcc/Acc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909689	50909689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			757	204	721	0	ENST00000440232.2:c.1409G>A	p.Arg470His	p.R470H	ENST00000440232	NM_002691.3	470	cGc/cAc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25464537	25464537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	137	679	1	ENST00000264709.3:c.1976G>A	p.Arg659His	p.R659H	ENST00000264709	NM_175629.2	659	cGc/cAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			657	343	483	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222730	5222731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	95	491	7	ENST00000357368.4:c.3072dupC	p.Val1025ArgfsTer34	p.V1025Rfs*34	ENST00000357368	NM_002850.3	1024	-/C																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111517	8111517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	131	548	0	ENST00000346208.3:c.1003G>A	p.Asp335Asn	p.D335N	ENST00000346208		335	Gac/Aac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	332	728	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188143	11188143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	128	506	1	ENST00000361445.4:c.5951C>T	p.Thr1984Met	p.T1984M	ENST00000361445	NM_004958.3	1984	aCg/aTg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716229	243716229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	116	454	0	ENST00000263826.5:c.965A>G	p.Asp322Gly	p.D322G	ENST00000263826	NM_005465.4	322	gAc/gGc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118360844	118360844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	153	337	0	ENST00000534358.1:c.4576A>C	p.Ile1526Leu	p.I1526L	ENST00000534358	NM_005933.3	1526	Atc/Ctc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118366515	118366515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	203	393	0	ENST00000534358.1:c.5464T>G	p.Leu1822Val	p.L1822V	ENST00000534358	NM_005933.3	1822	Tta/Gta																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628427	21628427	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			793	164	533	0	ENST00000421138.2:c.1191T>A	p.Asn397Lys	p.N397K	ENST00000421138		397	aaT/aaA																																																																														
POLE	5426	MSKCC	GRCh37	12	133218390	133218390	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			735	141	718	1	ENST00000320574.5:c.5221C>T	p.Gln1741Ter	p.Q1741*	ENST00000320574	NM_006231.2	1741	Cag/Tag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28919682	28919682	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115085855		P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	89	345	0	ENST00000282397.4:c.2255C>T	p.Ser752Leu	p.S752L	ENST00000282397	NM_002019.4	752	tCg/tTg																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35873751	35873751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	137	471	1	ENST00000216797.5:c.100C>A	p.Leu34Met	p.L34M	ENST00000216797	NM_020529.2	34	Ctg/Atg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95579430	95579430	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	86	230	0	ENST00000343455.3:c.2039T>C	p.Val680Ala	p.V680A	ENST00000343455	NM_177438.2	680	gTt/gCt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37682249	37682249	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	143	492	1	ENST00000447079.4:c.3440A>T	p.Gln1147Leu	p.Q1147L	ENST00000447079	NM_015083.1	1147	cAg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212173	36212173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	375	523	2	ENST00000222270.7:c.1924C>T	p.Arg642Trp	p.R642W	ENST00000222270	NM_014727.1	642	Cgg/Tgg																																																																														
ERF	2077	MSKCC	GRCh37	19	42752817	42752817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	513	811	0	ENST00000222329.4:c.1447C>T	p.Arg483Cys	p.R483C	ENST00000222329	NM_006494.2	483	Cgc/Tgc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912486	50912486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	184	661	0	ENST00000440232.2:c.2000G>A	p.Arg667Gln	p.R667Q	ENST00000440232	NM_002691.3	667	cGg/cAg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560946	9560946	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			543	117	453	0	ENST00000353224.5:c.836A>G	p.Gln279Arg	p.Q279R	ENST00000353224	NM_177990.2	279	cAg/cGg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521688	89521688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	201	421	0	ENST00000336596.2:c.2765G>A	p.Gly922Asp	p.G922D	ENST00000336596	NM_005233.5	922	gGt/gAt																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523731	176523731	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			651	117	560	2	ENST00000292408.4:c.2147del	p.Pro716GlnfsTer6	p.P716Qfs*6	ENST00000292408	NM_213647.1	714	tgC/tg																																																																														
FYN	2534	MSKCC	GRCh37	6	112035595	112035595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	126	442	1	ENST00000368678.4:c.299A>G	p.Asp100Gly	p.D100G	ENST00000368678		100	gAc/gGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	420	588	18	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291170	10291170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	38	703	0	ENST00000340748.4:c.301C>T	p.Arg101Trp	p.R101W	ENST00000340748		101	Cgg/Tgg																																																																														
SRC	6714	MSKCC	GRCh37	20	36031586	36031586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	122	549	0	ENST00000358208.4:c.1415G>A	p.Arg472His	p.R472H	ENST00000358208		472	cGc/cAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18446849	18446849	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	82	277	0	ENST00000266497.5:c.934A>G	p.Lys312Glu	p.K312E	ENST00000266497		312	Aaa/Gaa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427714	49427714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			830	135	709	0	ENST00000301067.7:c.10774A>G	p.Met3592Val	p.M3592V	ENST00000301067	NM_003482.3	3592	Atg/Gtg																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68290297	68290297	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	139	370	0	ENST00000487270.1:c.37del	p.Gln13LysfsTer7	p.Q13Kfs*7	ENST00000487270	NM_133509.3	13	Caa/aa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867035	45867035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	122	533	0	ENST00000391945.4:c.1084G>C	p.Ala362Pro	p.A362P	ENST00000391945	NM_000400.3	362	Gcc/Ccc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39239472	39239473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	31	505	0	ENST00000402219.2:c.2184dup	p.Trp729MetfsTer3	p.W729Mfs*3	ENST00000402219	NM_005633.3	728	-/A																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99156050	99156050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	137	565	0	ENST00000074304.5:c.730C>T	p.Arg244Trp	p.R244W	ENST00000074304	NM_001134224.1	244	Cgg/Tgg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719028	190719028	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	84	251	0	ENST00000441310.2:c.1030A>G	p.Asn344Asp	p.N344D	ENST00000441310	NM_000534.4	344	Aat/Gat																																																																														
MLH1	4292	MSKCC	GRCh37	3	37045904	37045904	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	136	510	0	ENST00000231790.2:c.319A>G	p.Ile107Val	p.I107V	ENST00000231790	NM_000249.3	107	Ata/Gta																																																																														
ATR	545	MSKCC	GRCh37	3	142241574	142241574	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	110	388	0	ENST00000350721.4:c.4262T>A	p.Ile1421Asn	p.I1421N	ENST00000350721	NM_001184.3	1421	aTt/aAt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209427	98209427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019199-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	48	574	0	ENST00000331920.6:c.4111G>A	p.Val1371Met	p.V1371M	ENST00000331920	NM_000264.3	1371	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			768	286	606	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400147	139400147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			879	412	790	1	ENST00000277541.6:c.4201G>T	p.Gly1401Trp	p.G1401W	ENST00000277541	NM_017617.3	1401	Ggg/Tgg																																																																														
STK11	6794	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	343	665	1	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																														
TET1	80312	MSKCC	GRCh37	10	70426876	70426877	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	171	379	0	ENST00000373644.4:c.4536_4537delinsCT	p.Ala1513Ser	p.A1513S	ENST00000373644	NM_030625.2	1512	acTGct/acCTct																																																																														
ATM	472	MSKCC	GRCh37	11	108129804	108129804	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	141	374	0	ENST00000278616.4:c.2466+2T>G		p.X822_splice	ENST00000278616	NM_000051.3	822																																																																															
FLT1	2321	MSKCC	GRCh37	13	28896966	28896966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	112	518	1	ENST00000282397.4:c.2914C>A	p.Gln972Lys	p.Q972K	ENST00000282397	NM_002019.4	972	Cag/Aag																																																																														
FLT1	2321	MSKCC	GRCh37	13	29002027	29002027	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	98	427	0	ENST00000282397.4:c.1138T>C	p.Ser380Pro	p.S380P	ENST00000282397	NM_002019.4	380	Tct/Cct																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347853	73347853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	76	268	0	ENST00000377767.4:c.1208A>T	p.Asp403Val	p.D403V	ENST00000377767	NM_014953.3	403	gAt/gTt																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30129797	30129797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			563	309	522	0	ENST00000263025.4:c.416G>A	p.Ser139Asn	p.S139N	ENST00000263025	NM_002746.2	139	aGc/aAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29553570	29553570	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	84	269	0	ENST00000358273.4:c.2119A>T	p.Met707Leu	p.M707L	ENST00000358273	NM_001042492.2	707	Atg/Ttg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78921128	78921128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	184	498	0	ENST00000306801.3:c.3242G>T	p.Cys1081Phe	p.C1081F	ENST00000306801	NM_020761.2	1081	tGc/tTc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279691	18279691	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	168	451	0	ENST00000222254.8:c.1964A>T	p.Tyr655Phe	p.Y655F	ENST00000222254	NM_005027.3	655	tAc/tTc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825326	134825326	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	301	405	0	ENST00000398015.3:c.842C>G	p.Ala281Gly	p.A281G	ENST00000398015	NM_004441.4	281	gCt/gGt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38982115	38982115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1303	143	332	0	ENST00000357387.3:c.607G>A	p.Ala203Thr	p.A203T	ENST00000357387	NM_152756.3	203	Gcc/Acc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982018	93982018	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	158	329	0	ENST00000369303.4:c.1447A>T	p.Lys483Ter	p.K483*	ENST00000369303	NM_004440.3	483	Aaa/Taa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5029906	5029906	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	100	324	0	ENST00000381652.3:c.350G>A	p.Arg117Lys	p.R117K	ENST00000381652	NM_004972.3	117	aGa/aAa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87549130	87549130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	204	499	0	ENST00000277120.3:c.1687G>A	p.Gly563Arg	p.G563R	ENST00000277120		563	Gga/Aga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209591	98209591	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs147067171		P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	126	436	0	ENST00000331920.6:c.3947A>G	p.Tyr1316Cys	p.Y1316C	ENST00000331920	NM_000264.3	1316	tAc/tGc																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152858125	152858125	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	437	430	0	ENST00000406277.2:c.490G>C	p.Val164Leu	p.V164L	ENST00000406277	NM_152274.4	164	Gtt/Ctt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389363	8389363	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	163	532	0	ENST00000356435.5:c.4255T>C	p.Tyr1419His	p.Y1419H	ENST00000356435		1419	Tat/Cat																																																																														
MDM2	4193	MSKCC	GRCh37	12	69229763	69230449	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTAGTATTTTTTTTCCCCTCTAATTATATTGGAAAATTATTAAATATTTTCTATGTTCATTGACTTTGAGATTGAAATAATATTATTCAGATTTCACTTGAAATCTTTACCTCTTGATTTGTTTAAACTAACACATTGGTTTGTGGACTTGAGGATTTCATAGTTCTTTATCATCTGATTTATATTATTATATTACTACTAATTGCCAAGAAGTCAATAGACCTCAATGAACATGCTTATTATAATGGTCTGTTCACTTTTAAAAACATATAATTCAACTACTGTTTTAATATTAACTTACTTTCTATAAAAGTAAAACATGCATACAGTTAAAGTCAAGTAGTACCCTTAGAGATCTGTTTCCCAGAAGTGACTGCCTTTAACATTTCTAGCTATTTCCCTATTATTTAATATCTCCATATTAGTTATTTATGAAGTAAAACCACCTAGCTGAATGTTTTGTTTTATTCATCCTAAACATCCTTTGTATTGACTTTTACCATTGTGGGTAAGGATTTCTCTCTCCTCCATTTTTTCCCCCTTTACACTCACTTACTCTATTTGATATTGTCTAAGGCTTTCTCATATATTGTAGTACATGATATTTGTTTAGGACTTATTACTAGGAAGCCTTCTGATTGAAGGAAATAGGGCGATGAATTGATGCTAATGAATGTGTTTTATT	AGGTAGTATTTTTTTTCCCCTCTAATTATATTGGAAAATTATTAAATATTTTCTATGTTCATTGACTTTGAGATTGAAATAATATTATTCAGATTTCACTTGAAATCTTTACCTCTTGATTTGTTTAAACTAACACATTGGTTTGTGGACTTGAGGATTTCATAGTTCTTTATCATCTGATTTATATTATTATATTACTACTAATTGCCAAGAAGTCAATAGACCTCAATGAACATGCTTATTATAATGGTCTGTTCACTTTTAAAAACATATAATTCAACTACTGTTTTAATATTAACTTACTTTCTATAAAAGTAAAACATGCATACAGTTAAAGTCAAGTAGTACCCTTAGAGATCTGTTTCCCAGAAGTGACTGCCTTTAACATTTCTAGCTATTTCCCTATTATTTAATATCTCCATATTAGTTATTTATGAAGTAAAACCACCTAGCTGAATGTTTTGTTTTATTCATCCTAAACATCCTTTGTATTGACTTTTACCATTGTGGGTAAGGATTTCTCTCTCCTCCATTTTTTCCCCCTTTACACTCACTTACTCTATTTGATATTGTCTAAGGCTTTCTCATATATTGTAGTACATGATATTTGTTTAGGACTTATTACTAGGAAGCCTTCTGATTGAAGGAAATAGGGCGATGAATTGATGCTAATGAATGTGTTTTATT	-			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	22	279	0	ENST00000462284.1:c.840+4_843del		p.X280_splice	ENST00000462284	NM_002392.5	280																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38960598	38960598	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			903	79	239	0	ENST00000357387.3:c.1753A>G	p.Ser585Gly	p.S585G	ENST00000357387	NM_152756.3	585	Agt/Ggt																																																																														
CCND3	896	MSKCC	GRCh37	6	41904360	41904415	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCAGGCCTTGCACTGCAGCCCCAATGCTGCCCGTGGCGATCATGGATGGCGGGT	ACCCAGGCCTTGCACTGCAGCCCCAATGCTGCCCGTGGCGATCATGGATGGCGGGT	-			P-0019978-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			810	45	539	0	ENST00000372991.4:c.593_648del	p.Tyr198CysfsTer8	p.Y198Cfs*8	ENST00000372991	NM_001760.3	198	tACCCGCCATCCATGATCGCCACGGGCAGCATTGGGGCTGCAGTGCAAGGCCTGGGT/t																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	123	435	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039427	49039427	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	145	436	0	ENST00000267163.4:c.2412C>G	p.Ile804Met	p.I804M	ENST00000267163	NM_000321.2	804	atC/atG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923789	72923790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023695-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			594	140	542	0	ENST00000268489.5:c.3288dup	p.Thr1097HisfsTer58	p.T1097Hfs*58	ENST00000268489	NM_006885.3	1096	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0025881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	283	510	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	250	266	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555267	106555267	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025881-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			3008	167	399	0	ENST00000369096.4:c.2384C>A	p.Ser795Ter	p.S795*	ENST00000369096	NM_001198.3	795	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579426	7579454	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTGCAGGGGCCGCCGGTGTAGGAGCTG	TGGTGCAGGGGCCGCCGGTGTAGGAGCTG	GGCC			P-0026533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	292	750	3	ENST00000269305.4:c.233_261delinsGGCC	p.Ala78GlyfsTer37	p.A78Gfs*37	ENST00000269305	NM_001126112.2	78	gCAGCTCCTACACCGGCGGCCCCTGCACCA/gGGCC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577519	7577519	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			731	145	412	2	ENST00000269305.4:c.762delC	p.Ile255SerfsTer90	p.I255Sfs*90	ENST00000269305	NM_001126112.2	254	atC/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1278782	1278782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			698	269	536	0	ENST00000310581.5:c.2260C>A	p.His754Asn	p.H754N	ENST00000310581	NM_198253.2	754	Cac/Aac																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876364	35876364	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			607	193	497	0	ENST00000303115.3:c.1156A>T	p.Arg386Trp	p.R386W	ENST00000303115	NM_002185.3	386	Agg/Tgg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570404	87570404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	52	565	0	ENST00000277120.3:c.2144G>C	p.Arg715Pro	p.R715P	ENST00000277120		715	cGg/cCg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410603	63410603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			851	133	602	0	ENST00000330258.3:c.2564A>G	p.His855Arg	p.H855R	ENST00000330258	NM_152424.3	855	cAt/cGt																																																																														
CBL	867	MSKCC	GRCh37	11	119148875	119148876	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GG	GG	T			P-0026552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	57	268	1	ENST00000264033.4:c.1096-1_1096delinsT		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																															
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	363	619	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243941	41243941	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	398	662	0	ENST00000357654.3:c.3607C>T	p.Arg1203Ter	p.R1203*	ENST00000357654	NM_007294.3	1203	Cga/Tga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533577	63533577	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	359	684	0	ENST00000307078.5:c.1577A>G	p.Lys526Arg	p.K526R	ENST00000307078	NM_004655.3	526	aAg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	308	581	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	225	470	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	49	542	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	63	381	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	169	488	3	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	175	697	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39937104	39937104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	311	534	2	ENST00000378444.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000378444	NM_001123385.1	27	Gaa/Aaa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	316	728	2	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981241	201981241	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	280	747	0	ENST00000359651.3:c.320T>G	p.Leu107Arg	p.L107R	ENST00000359651		107	cTt/cGt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813715	50813715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	144	742	0	ENST00000398568.2:c.1269G>A	p.Met423Ile	p.M423I	ENST00000398568	NM_001042412.1	423	atG/atA																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11113747	11113747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	112	581	0	ENST00000344626.4:c.1855G>A	p.Val619Met	p.V619M	ENST00000344626	NM_003072.3	619	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112175656	112175656	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	127	392	0	ENST00000257430.4:c.4365del	p.Asn1455LysfsTer18	p.N1455Kfs*18	ENST00000257430	NM_000038.5	1455	aaT/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	177	513	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	89	734	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212543825	212543825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	54	432	0	ENST00000342788.4:c.1574G>A	p.Arg525His	p.R525H	ENST00000342788	NM_005235.2	525	cGc/cAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449745	8449745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	45	491	2	ENST00000356435.5:c.3968G>A	p.Arg1323His	p.R1323H	ENST00000356435		1323	cGc/cAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865050	57865050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	452	948	0	ENST00000228682.2:c.2527C>A	p.His843Asn	p.H843N	ENST00000228682	NM_005269.2	843	Cat/Aat																																																																														
RB1	5925	MSKCC	GRCh37	13	49033919	49033929	+	frameshift_variant	Frame_Shift_Del	DEL	CACACCCTGCA	CACACCCTGCA	-			P-0031359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	256	543	0	ENST00000267163.4:c.2056_2066del	p.His686GlufsTer2	p.H686Efs*2	ENST00000267163	NM_000321.2	686	CACACCCTGCAg/g																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103506708	103506708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	154	286	0	ENST00000355739.4:c.451G>A	p.Glu151Lys	p.E151K	ENST00000355739	NM_000123.3	151	Gag/Aag																																																																														
RAD51B	5890	MSKCC	GRCh37	14	68331790	68331790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	314	565	0	ENST00000487270.1:c.386C>A	p.Thr129Asn	p.T129N	ENST00000487270	NM_133509.3	129	aCc/aAc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678541	88678541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	417	462	0	ENST00000360948.2:c.995C>A	p.Thr332Lys	p.T332K	ENST00000360948	NM_001012338.2	332	aCg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	344	765	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905710	50905710	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	366	956	2	ENST00000440232.2:c.759-1G>T		p.X253_splice	ENST00000440232	NM_002691.3	253																																																																															
BCOR	54880	MSKCC	GRCh37	X	39934190	39934190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146403660		P-0031359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	342	781	0	ENST00000378444.4:c.409G>A	p.Val137Ile	p.V137I	ENST00000378444	NM_001123385.1	137	Gtc/Atc																																																																														
AR	367	MSKCC	GRCh37	X	66943561	66943561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	199	514	0	ENST00000374690.3:c.2641C>G	p.Leu881Val	p.L881V	ENST00000374690	NM_000044.3	881	Ctg/Gtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0031447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	201	500	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
SDHC	6391	MSKCC	GRCh37	1	161284198	161284198	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0031447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	104	355	0	ENST00000367975.2:c.3G>A	p.Met1?	p.M1?	ENST00000367975	NM_003001.3	1	atG/atA																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31424569	31424569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1810	183	659	1	ENST00000344624.3:c.3226G>A	p.Glu1076Lys	p.E1076K	ENST00000344624		1076	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	81	468	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	25	243	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112136975	112136975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	54	355	0	ENST00000257430.4:c.730-1G>A		p.X244_splice	ENST00000257430	NM_000038.5	244																																																																															
RUNX1	861	MSKCC	GRCh37	21	36206809	36206809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	42	422	0	ENST00000300305.3:c.703G>A	p.Ala235Thr	p.A235T	ENST00000300305		235	Gcc/Acc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119794	70119794	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	104	634	0	ENST00000245479.2:c.800del	p.Pro267LeufsTer12	p.P267Lfs*12	ENST00000245479	NM_000346.3	266	Ccc/cc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8633319	8633319	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	38	442	0	ENST00000356435.5:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000356435		117	cGg/cAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129868	69129868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	58	245	1	ENST00000288368.4:c.4622C>T	p.Thr1541Met	p.T1541M	ENST00000288368	NM_024870.2	1541	aCg/aTg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048590	180048590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	120	672	1	ENST00000261937.6:c.1972C>T	p.Arg658Trp	p.R658W	ENST00000261937	NM_182925.4	658	Cgg/Tgg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923021	44923021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	184	554	0	ENST00000377967.4:c.1882G>T	p.Ala628Ser	p.A628S	ENST00000377967	NM_021140.2	628	Gca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0031465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	203	557	1	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	118	346	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508682	106508682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	129	469	1	ENST00000359195.3:c.676C>T	p.Arg226Cys	p.R226C	ENST00000359195	NM_002649.2	226	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175256	112175265	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTCCAGC	AAGTTCCAGC	TTT			P-0031465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	119	305	0	ENST00000257430.4:c.3965_3974delinsTTT	p.Glu1322ValfsTer2	p.E1322Vfs*2	ENST00000257430	NM_000038.5	1322	gAAGTTCCAGCa/gTTTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	183	653	1	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	44	512	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	67	285	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120003	70120003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	86	177	0	ENST00000245479.2:c.1005G>A	p.Trp335Ter	p.W335*	ENST00000245479	NM_000346.3	335	tgG/tgA																																																																														
FGF3	2248	MSKCC	GRCh37	11	69633500	69633500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	77	302	1	ENST00000334134.2:c.202C>A	p.Leu68Met	p.L68M	ENST00000334134	NM_005247.2	68	Ctg/Atg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191523	185191523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	306	624	0	ENST00000265026.3:c.2404C>T	p.Pro802Ser	p.P802S	ENST00000265026	NM_004721.4	802	Cct/Tct																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249390	153249390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	120	574	0	ENST00000281708.4:c.1388C>G	p.Thr463Ser	p.T463S	ENST00000281708	NM_033632.3	463	aCt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	16	693	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	277	400	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
BARD1	580	MSKCC	GRCh37	2	215593478	215593478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	189	297	0	ENST00000260947.4:c.2256G>T	p.Gln752His	p.Q752H	ENST00000260947	NM_000465.2	752	caG/caT																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021757	71021757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	298	382	0	ENST00000318789.4:c.1601G>T	p.Trp534Leu	p.W534L	ENST00000318789	NM_032682.5	534	tGg/tTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258832	16258832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	326	556	2	ENST00000375759.3:c.6097G>A	p.Ala2033Thr	p.A2033T	ENST00000375759	NM_015001.2	2033	Gct/Act																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259153	16259153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	345	550	0	ENST00000375759.3:c.6418G>C	p.Asp2140His	p.D2140H	ENST00000375759	NM_015001.2	2140	Gat/Cat																																																																														
TET1	80312	MSKCC	GRCh37	10	70405171	70405171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	345	507	0	ENST00000373644.4:c.2685G>T	p.Glu895Asp	p.E895D	ENST00000373644	NM_030625.2	895	gaG/gaT																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94211952	94211952	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	254	534	1	ENST00000323929.3:c.493A>T	p.Ser165Cys	p.S165C	ENST00000323929	NM_005591.3	165	Agt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434055	49434055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	322	552	0	ENST00000301067.7:c.7498G>T	p.Ala2500Ser	p.A2500S	ENST00000301067	NM_003482.3	2500	Gcg/Tcg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893213	32893213	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	101	262	0	ENST00000380152.3:c.68-1G>C		p.X23_splice	ENST00000380152		23																																																																															
SLX4	84464	MSKCC	GRCh37	16	3632627	3632627	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	227	727	0	ENST00000294008.3:c.5221A>G	p.Ser1741Gly	p.S1741G	ENST00000294008	NM_032444.2	1741	Agt/Ggt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521516	187521516	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	196	316	0	ENST00000441802.2:c.11641-2A>G		p.X3881_splice	ENST00000441802	NM_005245.3	3881																																																																															
TERT	7015	MSKCC	GRCh37	5	1295204	1295204	+	upstream_gene_variant	5'Flank	DEL	G	G	-			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	231	348	0				ENST00000310581	NM_198253.2																																																																																
NSD1	64324	MSKCC	GRCh37	5	176721585	176721585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	375	503	0	ENST00000439151.2:c.7216C>A	p.Pro2406Thr	p.P2406T	ENST00000439151	NM_022455.4	2406	Cct/Act																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	439	518	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	146	353	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175282	112175282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	86	215	0	ENST00000257430.4:c.3991A>T	p.Arg1331Ter	p.R1331*	ENST00000257430	NM_000038.5	1331	Aga/Tga																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976744	2976744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	241	516	0	ENST00000396946.4:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000396946	NM_032415.4	423	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112137030	112137030	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	172	476	0	ENST00000257430.4:c.784G>T	p.Glu262Ter	p.E262*	ENST00000257430	NM_000038.5	262	Gaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133234534	133234534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	194	355	0	ENST00000320574.5:c.3298C>G	p.Gln1100Glu	p.Q1100E	ENST00000320574	NM_006231.2	1100	Caa/Gaa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514655	103514655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	303	343	0	ENST00000355739.4:c.1156C>T	p.Arg386Trp	p.R386W	ENST00000355739	NM_000123.3	386	Cgg/Tgg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	164	441	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998934	11998934	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	269	282	0	ENST00000353533.5:c.436del	p.Met147TrpfsTer5	p.M147Wfs*5	ENST00000353533	NM_003010.3	146	Ctt/tt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55260478	55260478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	130	417	0	ENST00000275493.2:c.2645C>A	p.Ala882Glu	p.A882E	ENST00000275493	NM_005228.3	882	gCa/gAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	50	382	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	132	509	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0031615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	20	443	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0031615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	53	377	1	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459896	149459896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	88	517	0	ENST00000286301.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000286301	NM_005211.3	104	cCt/cTt																																																																														
MGA	23269	MSKCC	GRCh37	15	42058589	42058589	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	53	350	0	ENST00000219905.7:c.8309C>G	p.Ser2770Ter	p.S2770*	ENST00000219905	NM_001164273.1	2770	tCa/tGa																																																																														
MGA	23269	MSKCC	GRCh37	15	42059075	42059075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	66	398	0	ENST00000219905.7:c.8795C>G	p.Ser2932Cys	p.S2932C	ENST00000219905	NM_001164273.1	2932	tCt/tGt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32820993	32820993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	58	635	0	ENST00000354258.4:c.601G>A	p.Val201Ile	p.V201I	ENST00000354258	NM_000593.5	201	Gtt/Att																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059242	27059244	+	frameshift_variant	Frame_Shift_Del	DEL	GAT	GAT	A			P-0031615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	34	510	0	ENST00000324856.7:c.1879_1881delinsA	p.Asp627AsnfsTer14	p.D627Nfs*14	ENST00000324856	NM_006015.4	627	GAT/A																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425694	49425694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	105	672	0	ENST00000301067.7:c.12794G>A	p.Gly4265Asp	p.G4265D	ENST00000301067	NM_003482.3	4265	gGc/gAc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112939993	112939993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	244	539	0	ENST00000351677.2:c.1645C>G	p.Leu549Val	p.L549V	ENST00000351677	NM_002834.3	549	Cta/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	194	682	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	257	767	0	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047888	180047888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	287	844	0	ENST00000261937.6:c.2287G>A	p.Val763Met	p.V763M	ENST00000261937	NM_182925.4	763	Gtg/Atg																																																																														
FH	2271	MSKCC	GRCh37	1	241671940	241671940	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	190	570	0	ENST00000366560.3:c.701C>G	p.Thr234Ser	p.T234S	ENST00000366560	NM_000143.3	234	aCt/aGt																																																																														
MSH3	4437	MSKCC	GRCh37	5	80088574	80088574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	170	517	0	ENST00000265081.6:c.2566A>G	p.Lys856Glu	p.K856E	ENST00000265081	NM_002439.4	856	Aaa/Gaa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026705	6026705	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1152	303	944	1	ENST00000265849.7:c.1691T>G	p.Val564Gly	p.V564G	ENST00000265849	NM_000535.5	564	gTt/gGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55225394	55225394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	407	582	1	ENST00000275493.2:c.1246G>T	p.Asp416Tyr	p.D416Y	ENST00000275493	NM_005228.3	416	Gac/Tac																																																																														
HGF	3082	MSKCC	GRCh37	7	81399202	81399202	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	338	603	0	ENST00000222390.5:c.86C>A	p.Ala29Glu	p.A29E	ENST00000222390	NM_000601.4	29	gCa/gAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526738	106526738	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	135	381	0	ENST00000359195.3:c.3030+1G>A		p.X1010_splice	ENST00000359195	NM_002649.2	1010																																																																															
KMT2C	58508	MSKCC	GRCh37	7	151873361	151873361	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	142	381	0	ENST00000262189.6:c.9177G>C	p.Leu3059Phe	p.L3059F	ENST00000262189	NM_170606.2	3059	ttG/ttC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	711	553	1	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272209	15272209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	363	445	1	ENST00000263388.2:c.6230C>T	p.Pro2077Leu	p.P2077L	ENST00000263388	NM_000435.2	2077	cCc/cTc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658300	18658300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	220	366	0	ENST00000266497.5:c.3105C>A	p.His1035Gln	p.H1035Q	ENST00000266497		1035	caC/caA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117662793	117662793	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0031790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	148	176	0	ENST00000368508.3:c.4672C>A	p.Pro1558Thr	p.P1558T	ENST00000368508	NM_002944.2	1558	Cca/Aca																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467748	50467748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	433	444	0	ENST00000331340.3:c.983G>T	p.Arg328Leu	p.R328L	ENST00000331340	NM_006060.4	328	cGc/cTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396362	139396362	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	666	499	0	ENST00000277541.6:c.5476G>T	p.Glu1826Ter	p.E1826*	ENST00000277541	NM_017617.3	1826	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	86	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0031792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	51	314	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
JUN	3725	MSKCC	GRCh37	1	59247910	59247910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	302	667	0	ENST00000371222.2:c.833C>G	p.Ala278Gly	p.A278G	ENST00000371222	NM_002228.3	278	gCc/gGc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44913082	44913082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	62	225	0	ENST00000377967.4:c.757C>A	p.His253Asn	p.H253N	ENST00000377967	NM_021140.2	253	Cat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	156	474	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112888189	112888189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	148	495	0	ENST00000351677.2:c.205G>A	p.Glu69Lys	p.E69K	ENST00000351677	NM_002834.3	69	Gag/Aag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	99	303	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	73	367	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	83	219	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175351	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	25	205	0	ENST00000257430.4:c.4062_4063del	p.Ser1355PhefsTer19	p.S1355Ffs*19	ENST00000257430	NM_000038.5	1354	TTt/t																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	191	544	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	151	565	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522416	176522416	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	272	650	0	ENST00000292408.4:c.1605C>G	p.Asn535Lys	p.N535K	ENST00000292408	NM_213647.1	535	aaC/aaG																																																																														
APC	324	MSKCC	GRCh37	5	112175072	112175072	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	58	170	0	ENST00000257430.4:c.3781A>C	p.Thr1261Pro	p.T1261P	ENST00000257430	NM_000038.5	1261	Act/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	133	582	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398255	25398255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	21	396	0	ENST00000256078.4:c.64C>A	p.Gln22Lys	p.Q22K	ENST00000256078	NM_033360.2	22	Cag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41277230	41277230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	38	246	0	ENST00000349496.5:c.1699G>A	p.Glu567Lys	p.E567K	ENST00000349496	NM_001904.3	567	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	30	315	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18699324	18699324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	15	303	0	ENST00000266497.5:c.3425G>A	p.Arg1142His	p.R1142H	ENST00000266497		1142	cGt/cAt																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51436108	51436108	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	55	350	0	ENST00000262662.1:c.68G>C	p.Ser23Thr	p.S23T	ENST00000262662		23	aGt/aCt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57865611	57865611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	113	633	0	ENST00000228682.2:c.3088G>A	p.Glu1030Lys	p.E1030K	ENST00000228682	NM_005269.2	1030	Gaa/Aaa																																																																														
AKT1	207	MSKCC	GRCh37	14	105241496	105241496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	99	555	0	ENST00000349310.3:c.484G>A	p.Gly162Ser	p.G162S	ENST00000349310	NM_001014432.1	162	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	154	589	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	85	468	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	88	328	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114917829	114917829	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	106	456	0	ENST00000543371.1:c.1318+1G>A		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																															
INPPL1	3636	MSKCC	GRCh37	11	71949133	71949141	+	inframe_deletion	In_Frame_Del	DEL	CATGAGTGC	CATGAGTGC	-			P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	213	711	0	ENST00000298229.2:c.3601_3609del	p.Met1201_Ala1203del	p.M1201_A1203del	ENST00000298229	NM_001567.3	1200	ggCATGAGTGCc/ggc																																																																														
APC	324	MSKCC	GRCh37	5	112173860	112173860	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	42	268	0	ENST00000257430.4:c.2569G>T	p.Gly857Ter	p.G857*	ENST00000257430	NM_000038.5	857	Gga/Tga																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967972	93967972	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	49	450	0	ENST00000369303.4:c.1955T>G	p.Leu652Trp	p.L652W	ENST00000369303	NM_004440.3	652	tTg/tGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	85	443	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0031833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	46	312	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	67	610	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																														
APC	324	MSKCC	GRCh37	5	112175213	112175213	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	45	207	0	ENST00000257430.4:c.3922A>T	p.Lys1308Ter	p.K1308*	ENST00000257430	NM_000038.5	1308	Aaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133237659	133237659	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	105	590	0	ENST00000320574.5:c.2956C>T	p.Gln986Ter	p.Q986*	ENST00000320574	NM_006231.2	986	Caa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468368	89468368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	35	211	1	ENST00000336596.2:c.1902G>T	p.Glu634Asp	p.E634D	ENST00000336596	NM_005233.5	634	gaG/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	49	624	2	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983294	15983294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	36	471	0	ENST00000268712.3:c.3485G>A	p.Arg1162Gln	p.R1162Q	ENST00000268712	NM_006311.3	1162	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	31	521	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0031940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	48	622	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	228	464	0	ENST00000371953.3:c.380G>A	p.Gly127Glu	p.G127E	ENST00000371953	NM_000314.4	127	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	560	675	1	ENST00000269305.4:c.989T>C	p.Leu330Pro	p.L330P	ENST00000269305	NM_001126112.2	330	cTt/cCt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18976402	18976402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	354	750	0	ENST00000262803.5:c.3052G>A	p.Gly1018Arg	p.G1018R	ENST00000262803	NM_002911.3	1018	Ggg/Agg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591121	67591135	+	inframe_deletion	In_Frame_Del	DEL	CAGCTGAGAAAGACG	CAGCTGAGAAAGACG	-			P-0031951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	54	276	0	ENST00000274335.5:c.1714_1728del	p.Gln572_Thr576del	p.Q572_T576del	ENST00000274335		572	CAGCTGAGAAAGACG/-																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188061	32188061	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0031951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	168	622	1	ENST00000375023.3:c.1160G>T	p.Gly387Val	p.G387V	ENST00000375023	NM_004557.3	387	gGa/gTa																																																																														
RB1	5925	MSKCC	GRCh37	13	49033853	49033855	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0031951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	252	432	0	ENST00000267163.4:c.1990_1992del	p.Thr664del	p.T664del	ENST00000267163	NM_000321.2	664	ACA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	284	720	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907082	32907082	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	117	474	0	ENST00000380152.3:c.1467del	p.Gly490GlufsTer19	p.G490Efs*19	ENST00000380152		489	tcT/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	47	507	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0031965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	47	612	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295133	1295163	+	5_prime_UTR_variant	5'UTR	DEL	CACGTGCGCAGCAGGACGCAGCGCTGCCTGA	CACGTGCGCAGCAGGACGCAGCGCTGCCTGA	TGT			P-0031965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	21	172	0				ENST00000310581	NM_198253.2																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67589585	67589605	+	inframe_deletion	In_Frame_Del	DEL	CATGAATATAACACTCAGTTT	CATGAATATAACACTCAGTTT	-			P-0031965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	11	206	0	ENST00000274335.5:c.1350_1370del	p.His450_Phe456del	p.H450_F456del	ENST00000274335		450	CATGAATATAACACTCAGTTT/-																																																																														
NSD1	64324	MSKCC	GRCh37	5	176662828	176662828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	27	354	0	ENST00000439151.2:c.3803G>A	p.Arg1268Gln	p.R1268Q	ENST00000439151	NM_022455.4	1268	cGg/cAg																																																																														
TET1	80312	MSKCC	GRCh37	10	70406297	70406297	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	48	684	0	ENST00000373644.4:c.3811G>C	p.Glu1271Gln	p.E1271Q	ENST00000373644	NM_030625.2	1271	Gaa/Caa																																																																														
ATRX	546	MSKCC	GRCh37	X	76938457	76938457	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	101	777	0	ENST00000373344.5:c.2291del	p.Leu764CysfsTer4	p.L764Cfs*4	ENST00000373344	NM_000489.3	764	tTg/tg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0031999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	170	619	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185183540	185183540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	43	395	1	ENST00000265026.3:c.1394C>T	p.Ala465Val	p.A465V	ENST00000265026	NM_004721.4	465	gCg/gTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246116	46246116	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	94	399	0	ENST00000334344.6:c.4210C>T	p.Gln1404Ter	p.Q1404*	ENST00000334344	NM_152641.2	1404	Caa/Taa																																																																														
SDHC	6391	MSKCC	GRCh37	1	161310416	161310416	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	73	567	0	ENST00000367975.2:c.212A>G	p.His71Arg	p.H71R	ENST00000367975	NM_003001.3	71	cAc/cGc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350040	15350040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	121	1050	0	ENST00000263377.2:c.3612C>G	p.Ser1204Arg	p.S1204R	ENST00000263377	NM_058243.2	1204	agC/agG																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101891328	101891328	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	115	702	0	ENST00000374994.4:c.289A>C	p.Thr97Pro	p.T97P	ENST00000374994	NM_004612.2	97	Aca/Cca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	97	470	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	112	764	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	61	361	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0032042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	66	526	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	98	372	0	ENST00000359013.4:c.1657C>G	p.Arg553Gly	p.R553G	ENST00000359013	NM_001024847.2	553	Cgt/Ggt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50912139	50912139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	116	880	1	ENST00000440232.2:c.1873G>A	p.Gly625Arg	p.G625R	ENST00000440232	NM_002691.3	625	Ggg/Agg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68950500	68950500	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	55	243	0	ENST00000288368.4:c.812T>A	p.Leu271His	p.L271H	ENST00000288368	NM_024870.2	271	cTt/cAt																																																																														
MED12	9968	MSKCC	GRCh37	X	70341631	70341631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	114	895	1	ENST00000374080.3:c.1066C>T	p.Arg356Trp	p.R356W	ENST00000374080		356	Cgg/Tgg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7216967	7216967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	144	301	0	ENST00000380728.2:c.554G>A	p.Gly185Asp	p.G185D	ENST00000380728		185	gGt/gAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	184	384	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0032048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	368	782	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423539	88423539	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	253	634	0	ENST00000360948.2:c.2296T>A	p.Tyr766Asn	p.Y766N	ENST00000360948	NM_001012338.2	766	Tat/Aat																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2220147	2220147	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200507664		P-0032048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	200	768	1	ENST00000398665.3:c.2732C>T	p.Ser911Leu	p.S911L	ENST00000398665	NM_032482.2	911	tCg/tTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219026	36219026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	176	735	1	ENST00000222270.7:c.4525G>A	p.Asp1509Asn	p.D1509N	ENST00000222270	NM_014727.1	1509	Gac/Aac																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956703	93956703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	134	314	0	ENST00000369303.4:c.2533G>T	p.Val845Phe	p.V845F	ENST00000369303	NM_004440.3	845	Gtt/Ttt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	161	385	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0032056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	271	583	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TET2	54790	MSKCC	GRCh37	4	106182928	106182928	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	105	258	0	ENST00000380013.4:c.3967G>T	p.Glu1323Ter	p.E1323*	ENST00000380013	NM_001127208.2	1323	Gag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593478	48593479	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0032056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	114	313	0	ENST00000342988.3:c.1231_1232del	p.Ser411LeufsTer17	p.S411Lfs*17	ENST00000342988	NM_005359.5	410	cAG/c																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	156	617	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99454561	99454561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	43	570	1	ENST00000268035.6:c.1480C>T	p.His494Tyr	p.H494Y	ENST00000268035	NM_000875.3	494	Cat/Tat																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032542	47032542	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	178	643	0	ENST00000329236.7:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000329236	NM_001204466.1	73	Cag/Tag																																																																														
ARAF	369	MSKCC	GRCh37	X	47422649	47422649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	41	636	0	ENST00000377045.4:c.121G>T	p.Val41Phe	p.V41F	ENST00000377045	NM_001654.4	41	Gtc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	41	450	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	384	568	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578507	7578507	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	417	895	0	ENST00000269305.4:c.423C>A	p.Cys141Ter	p.C141*	ENST00000269305	NM_001126112.2	141	tgC/tgA																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44922694	44922694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	102	191	0	ENST00000377967.4:c.1555C>T	p.Arg519Ter	p.R519*	ENST00000377967	NM_021140.2	519	Cga/Tga																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9770559	9770559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	148	714	0	ENST00000377346.4:c.46G>C	p.Glu16Gln	p.E16Q	ENST00000377346	NM_005026.3	16	Gag/Cag																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120529586	120529586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	170	432	0	ENST00000256646.2:c.871A>G	p.Thr291Ala	p.T291A	ENST00000256646	NM_024408.3	291	Aca/Gca																																																																														
SESN3	143686	MSKCC	GRCh37	11	94923050	94923050	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	159	674	0	ENST00000536441.1:c.418G>T	p.Glu140Ter	p.E140*	ENST00000536441	NM_144665.3	140	Gag/Tag																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505337	125505337	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	73	393	0	ENST00000428830.2:c.627C>G	p.Asp209Glu	p.D209E	ENST00000428830	NM_001114121.2	209	gaC/gaG																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650562	18650562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	193	512	0	ENST00000266497.5:c.2773G>T	p.Asp925Tyr	p.D925Y	ENST00000266497		925	Gat/Tat																																																																														
RB1	5925	MSKCC	GRCh37	13	48937062	48937066	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGT	TCTGT	-			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	147	240	0	ENST00000267163.4:c.830_834del	p.Leu277GlnfsTer4	p.L277Qfs*4	ENST00000267163	NM_000321.2	277	cTCTGT/c																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807835	3807835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	78	480	0	ENST00000262367.5:c.3584C>G	p.Ser1195Cys	p.S1195C	ENST00000262367	NM_004380.2	1195	tCc/tGc																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733053	74733053	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	77	418	0	ENST00000359995.5:c.190G>C	p.Asp64His	p.D64H	ENST00000359995	NM_001195427.1	64	Gac/Cac																																																																														
ERF	2077	MSKCC	GRCh37	19	42754516	42754516	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	353	916	0	ENST00000222329.4:c.224A>T	p.Gln75Leu	p.Q75L	ENST00000222329	NM_006494.2	75	cAg/cTg																																																																														
ALK	238	MSKCC	GRCh37	2	29917813	29917813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	117	672	0	ENST00000389048.3:c.855C>A	p.Asn285Lys	p.N285K	ENST00000389048	NM_004304.4	285	aaC/aaA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921470	178921470	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	104	520	0	ENST00000263967.3:c.952A>G	p.Met318Val	p.M318V	ENST00000263967	NM_006218.2	318	Atg/Gtg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540779	187540779	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	55	406	0	ENST00000441802.2:c.6961C>T	p.Gln2321Ter	p.Q2321*	ENST00000441802	NM_005245.3	2321	Cag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67569790	67569790	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	184	325	0	ENST00000274335.5:c.451A>G	p.Arg151Gly	p.R151G	ENST00000274335		151	Aga/Gga																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176516656	176516656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	275	684	0	ENST00000292408.4:c.53C>T	p.Pro18Leu	p.P18L	ENST00000292408	NM_213647.1	18	cCa/cTa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180030221	180030221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	251	681	0	ENST00000261937.6:c.4063G>T	p.Val1355Leu	p.V1355L	ENST00000261937	NM_182925.4	1355	Gtg/Ttg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139401323	139401323	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	310	965	0	ENST00000277541.6:c.3746del	p.Gly1249AlafsTer196	p.G1249Afs*196	ENST00000277541	NM_017617.3	1249	gGc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	101	483	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	171	259	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0032184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	281	426	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0032184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	191	384	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	326	492	0	ENST00000335508.6:c.2704G>C	p.Glu902Gln	p.E902Q	ENST00000335508	NM_012433.2	902	Gaa/Caa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858308	59858308	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	322	494	0	ENST00000259008.2:c.1687G>C	p.Asp563His	p.D563H	ENST00000259008	NM_032043.2	563	Gat/Cat																																																																														
TCEB1	6921	MSKCC	GRCh37	8	74859031	74859031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	296	362	0	ENST00000284811.8:c.173A>G	p.Asn58Ser	p.N58S	ENST00000284811		58	aAt/aGt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265441	198265441	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0032184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	308	459	0	ENST00000335508.6:c.2716G>C	p.Glu906Gln	p.E906Q	ENST00000335508	NM_012433.2	906	Gag/Cag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265489	198265489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	438	619	0	ENST00000335508.6:c.2668G>A	p.Glu890Lys	p.E890K	ENST00000335508	NM_012433.2	890	Gaa/Aaa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539826	187539826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	260	417	0	ENST00000441802.2:c.7914C>A	p.Asp2638Glu	p.D2638E	ENST00000441802	NM_005245.3	2638	gaC/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	312	661	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0032209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	118	382	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	214	438	1	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222475	2222475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200919682		P-0032209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	337	611	0	ENST00000398665.3:c.3307G>A	p.Val1103Met	p.V1103M	ENST00000398665	NM_032482.2	1103	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112128142	112128142	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0032209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	58	302	0	ENST00000257430.4:c.646-1G>A		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814946	139814946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	203	506	0	ENST00000247668.2:c.939G>C	p.Lys313Asn	p.K313N	ENST00000247668	NM_021138.3	313	aaG/aaC																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285869	46285869	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	114	352	0	ENST00000334344.6:c.5137T>A	p.Ser1713Thr	p.S1713T	ENST00000334344	NM_152641.2	1713	Tct/Act																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5218452	5218452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	267	606	0	ENST00000357368.4:c.4027C>T	p.Arg1343Cys	p.R1343C	ENST00000357368	NM_002850.3	1343	Cgc/Tgc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37048528	37048528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	70	414	0	ENST00000231790.2:c.427G>T	p.Ala143Ser	p.A143S	ENST00000231790	NM_000249.3	143	Gct/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112116537	112116538	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAAAT			P-0032209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	96	355	0	ENST00000257430.4:c.585_589dup	p.Arg197LysfsTer10	p.R197Kfs*10	ENST00000257430	NM_000038.5	194	-/CAAAT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	421	655	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
AR	367	MSKCC	GRCh37	X	66765715	66765715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	483	990	0	ENST00000374690.3:c.727G>C	p.Val243Leu	p.V243L	ENST00000374690	NM_000044.3	243	Gtg/Ctg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49418643	49418643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	383	642	0	ENST00000301067.7:c.15871G>A	p.Glu5291Lys	p.E5291K	ENST00000301067	NM_003482.3	5291	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	48878115	48878115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	48	72	0	ENST00000267163.4:c.68del	p.Pro23ArgfsTer42	p.P23Rfs*42	ENST00000267163	NM_000321.2	23	Ccg/cg																																																																														
MGA	23269	MSKCC	GRCh37	15	42052650	42052650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	378	583	0	ENST00000219905.7:c.7321G>T	p.Asp2441Tyr	p.D2441Y	ENST00000219905	NM_001164273.1	2441	Gat/Tat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879699	37879699	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	363	546	0	ENST00000269571.5:c.2074C>T	p.Gln692Ter	p.Q692*	ENST00000269571		692	Cag/Tag																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259304	36259304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	369	329	0	ENST00000300305.3:c.187G>T	p.Ala63Ser	p.A63S	ENST00000300305		63	Gcc/Tcc																																																																														
ATR	545	MSKCC	GRCh37	3	142215907	142215907	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	262	530	0	ENST00000350721.4:c.5686G>C	p.Ala1896Pro	p.A1896P	ENST00000350721	NM_001184.3	1896	Gcc/Ccc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152129	55152129	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	406	664	1	ENST00000257290.5:c.2561G>T	p.Ser854Ile	p.S854I	ENST00000257290	NM_006206.4	854	aGt/aTt																																																																														
AR	367	MSKCC	GRCh37	X	66931246	66931246	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	185	368	0	ENST00000374690.3:c.1888C>T	p.Arg630Trp	p.R630W	ENST00000374690	NM_000044.3	630	Cgg/Tgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76939645	76939645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	204	819	0	ENST00000373344.5:c.1103C>A	p.Ser368Tyr	p.S368Y	ENST00000373344	NM_000489.3	368	tCc/tAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	216	512	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	124	297	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427687	49427687	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	105	670	0	ENST00000301067.7:c.10801C>T	p.Gln3601Ter	p.Q3601*	ENST00000301067	NM_003482.3	3601	Caa/Taa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78866624	78866624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	239	565	0	ENST00000306801.3:c.2197A>G	p.Arg733Gly	p.R733G	ENST00000306801	NM_020761.2	733	Agg/Ggg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639671	47639671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	31	382	0	ENST00000233146.2:c.764G>T	p.Ser255Ile	p.S255I	ENST00000233146	NM_000251.2	255	aGt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	627	645	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
HGF	3082	MSKCC	GRCh37	7	81359014	81359014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	156	465	1	ENST00000222390.5:c.947C>A	p.Thr316Asn	p.T316N	ENST00000222390	NM_000601.4	316	aCt/aAt																																																																														
MITF	4286	MSKCC	GRCh37	3	70014176	70014176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	96	461	0	ENST00000352241.4:c.1340G>A	p.Gly447Asp	p.G447D	ENST00000352241	NM_198159.2	447	gGc/gAc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292580	15292580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867505691		P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	138	620	0	ENST00000263388.2:c.2599G>A	p.Gly867Ser	p.G867S	ENST00000263388	NM_000435.2	867	Ggc/Agc																																																																														
NF1	4763	MSKCC	GRCh37	17	29679396	29679396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	53	350	0	ENST00000358273.4:c.7579G>T	p.Gly2527Trp	p.G2527W	ENST00000358273	NM_001042492.2	2527	Ggg/Tgg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245225	46245225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	45	406	1	ENST00000334344.6:c.3319G>A	p.Ala1107Thr	p.A1107T	ENST00000334344	NM_152641.2	1107	Gca/Aca																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71949104	71949104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	326	505	2	ENST00000298229.2:c.3571G>T	p.Gly1191Trp	p.G1191W	ENST00000298229	NM_001567.3	1191	Ggg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108151877	108151877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	128	284	0	ENST00000278616.4:c.3558A>T	p.Glu1186Asp	p.E1186D	ENST00000278616	NM_000051.3	1186	gaA/gaT																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436703	110436703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	120	737	0	ENST00000375856.3:c.1698C>A	p.Asp566Glu	p.D566E	ENST00000375856	NM_003749.2	566	gaC/gaA																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14029555	14029555	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	76	281	0	ENST00000311895.7:c.1767del	p.Gln590SerfsTer14	p.Q590Sfs*14	ENST00000311895	NM_005236.2	589	cGg/cg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198268489	198268489	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	108	333	0	ENST00000335508.6:c.1540-1G>C		p.X514_splice	ENST00000335508	NM_012433.2	514																																																																															
SETD2	29072	MSKCC	GRCh37	3	47163932	47163932	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	75	360	0	ENST00000409792.3:c.2194T>G	p.Leu732Val	p.L732V	ENST00000409792	NM_014159.6	732	Ttg/Gtg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499326	89499326	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	54	303	0	ENST00000336596.2:c.2497-1G>T		p.X833_splice	ENST00000336596	NM_005233.5	833																																																																															
WWTR1	25937	MSKCC	GRCh37	3	149243914	149243914	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	66	341	0	ENST00000360632.3:c.906-2A>T		p.X302_splice	ENST00000360632	NM_015472.4	302																																																																															
KDR	3791	MSKCC	GRCh37	4	55960974	55960974	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	220	349	0	ENST00000263923.4:c.2966A>T	p.Glu989Val	p.E989V	ENST00000263923	NM_002253.2	989	gAg/gTg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056039	26056039	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs61742488		P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	57	358	0	ENST00000343677.2:c.618G>C	p.Lys206Asn	p.K206N	ENST00000343677	NM_005319.3	206	aaG/aaC																																																																														
PARK2	5071	MSKCC	GRCh37	6	161771157	161771157	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	266	498	0	ENST00000366898.1:c.1372A>T	p.Met458Leu	p.M458L	ENST00000366898	NM_004562.2	458	Atg/Ttg																																																																														
PARK2	5071	MSKCC	GRCh37	6	161990386	161990386	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	93	326	0	ENST00000366898.1:c.933+1G>T		p.X311_splice	ENST00000366898	NM_004562.2	311																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975456	13975456	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	386	341	0	ENST00000405192.2:c.431del	p.Pro144GlnfsTer111	p.P144Qfs*111	ENST00000405192	NM_001163147.1	144	cCa/ca																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345971	152345971	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	185	463	0	ENST00000359321.1:c.599A>C	p.Gln200Pro	p.Q200P	ENST00000359321	NM_005431.1	200	cAg/cCg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53228340	53228340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	251	442	1	ENST00000375401.3:c.2062G>T	p.Gly688Cys	p.G688C	ENST00000375401	NM_004187.3	688	Ggt/Tgt																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412500	63412500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	95	610	0	ENST00000330258.3:c.667G>T	p.Ala223Ser	p.A223S	ENST00000330258	NM_152424.3	223	Gcc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577571	7577571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	57	504	0	ENST00000269305.4:c.710T>A	p.Met237Lys	p.M237K	ENST00000269305	NM_001126112.2	237	aTg/aAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	290	384	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	255	522	1	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907432	32907432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	85	230	0	ENST00000380152.3:c.1817C>A	p.Pro606Gln	p.P606Q	ENST00000380152		606	cCg/cAg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437892	110437892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	38	76	0	ENST00000375856.3:c.509C>A	p.Ala170Asp	p.A170D	ENST00000375856	NM_003749.2	170	gCc/gAc																																																																														
BLM	641	MSKCC	GRCh37	15	91295124	91295124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	122	322	0	ENST00000355112.3:c.907C>T	p.Pro303Ser	p.P303S	ENST00000355112	NM_000057.2	303	Cct/Tct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439897	56439908	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCTCACCGGC	CTGCTCACCGGC	-			P-0032401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	171	358	0	ENST00000407977.2:c.684_687+8del		p.X228_splice	ENST00000407977		228																																																																															
TP53	7157	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	126	683	1	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	55	618	1	ENST00000322088.6:c.767C>A	p.Ser256Tyr	p.S256Y	ENST00000322088	NM_014225.5	256	tCc/tAc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039668	47039668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	52	814	1	ENST00000329236.7:c.886G>A	p.Gly296Ser	p.G296S	ENST00000329236	NM_001204466.1	296	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	73	489	0	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66213909	66213909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	37	362	1	ENST00000273854.3:c.2521C>T	p.Pro841Ser	p.P841S	ENST00000273854	NM_004439.5	841	Cca/Tca																																																																														
RB1	5925	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	19	270	0	ENST00000267163.4:c.1959delA	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																														
CIC	23152	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	106	795	1	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	69	355	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	164	607	0	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	108	558	11	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346204	89346204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201043388		P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	28	261	0	ENST00000301030.4:c.6746G>A	p.Arg2249His	p.R2249H	ENST00000301030	NM_001256183.1	2249	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830868	72830868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	109	656	0	ENST00000268489.5:c.5713C>T	p.Pro1905Ser	p.P1905S	ENST00000268489	NM_006885.3	1905	Ccg/Tcg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424178	49424178	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	57	403	1	ENST00000301067.7:c.13884delC	p.Thr4629ProfsTer11	p.T4629Pfs*11	ENST00000301067	NM_003482.3	4628	ccC/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	46	360	0				ENST00000310581	NM_198253.2																																																																																
SH2B3	10019	MSKCC	GRCh37	12	111856545	111856545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	58	182	0	ENST00000341259.2:c.596C>T	p.Ala199Val	p.A199V	ENST00000341259	NM_005475.2	199	gCg/gTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427950	49427950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	121	588	0	ENST00000301067.7:c.10640G>A	p.Arg3547His	p.R3547H	ENST00000301067	NM_003482.3	3547	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945645	71945645	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	82	464	0	ENST00000298229.2:c.2401del	p.Arg801AlafsTer44	p.R801Afs*44	ENST00000298229	NM_001567.3	801	Cgc/gc																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9775948	9775948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	95	616	0	ENST00000377346.4:c.412G>A	p.Asp138Asn	p.D138N	ENST00000377346	NM_005026.3	138	Gac/Aac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948755	71948755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	113	686	1	ENST00000298229.2:c.3470del	p.Gly1157AspfsTer45	p.G1157Dfs*45	ENST00000298229	NM_001567.3	1156	cGg/cg																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784073	9784073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	95	618	0	ENST00000377346.4:c.2641G>A	p.Gly881Ser	p.G881S	ENST00000377346	NM_005026.3	881	Ggc/Agc																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246093208	246093208	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181459217		P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	54	418	0	ENST00000388985.4:c.563C>T	p.Ala188Val	p.A188V	ENST00000388985		188	gCg/gTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720855	89720856	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	158	346	0	ENST00000371953.3:c.1007dupA	p.Tyr336Ter	p.Y336*	ENST00000371953	NM_000314.4	336	tac/tAac																																																																														
POLE	5426	MSKCC	GRCh37	12	133257818	133257818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	63	423	0	ENST00000320574.5:c.110G>A	p.Arg37Gln	p.R37Q	ENST00000320574	NM_006231.2	37	cGg/cAg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73355792	73355792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	81	459	0	ENST00000377767.4:c.179G>A	p.Cys60Tyr	p.C60Y	ENST00000377767	NM_014953.3	60	tGc/tAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645310	67645310	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	65	404	0	ENST00000264010.4:c.579del	p.Asp194ThrfsTer28	p.D194Tfs*28	ENST00000264010	NM_006565.3	192	cAa/ca																																																																														
SPOP	8405	MSKCC	GRCh37	17	47688801	47688801	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	80	355	0	ENST00000347630.2:c.499T>G	p.Ser167Ala	p.S167A	ENST00000347630	NM_001007230.1	167	Tct/Gct																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554537	63554537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	80	454	1	ENST00000307078.5:c.202C>T	p.Arg68Trp	p.R68W	ENST00000307078	NM_004655.3	68	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210868	36210868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	117	692	0	ENST00000222270.7:c.619C>T	p.Arg207Trp	p.R207W	ENST00000222270	NM_014727.1	207	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212653	36212726	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGCTATTCAAGATCGATCAGCAGCAGCAGCAGAAGGTGGCAGCTTCCATGCCGGTGAGTGTGGTCCCTGGGCC	CAGCTATTCAAGATCGATCAGCAGCAGCAGCAGAAGGTGGCAGCTTCCATGCCGGTGAGTGTGGTCCCTGGGCC	-			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	58	729	0	ENST00000222270.7:c.2408_2457+24del		p.X803_splice	ENST00000222270	NM_014727.1	803																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36221463	36221463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	115	817	0	ENST00000222270.7:c.5222G>T	p.Gly1741Val	p.G1741V	ENST00000222270	NM_014727.1	1741	gGt/gTt																																																																														
ALK	238	MSKCC	GRCh37	2	29543743	29543743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	21	422	0	ENST00000389048.3:c.1420C>A	p.Leu474Met	p.L474M	ENST00000389048	NM_004304.4	474	Ctg/Atg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47637469	47637469	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	29	431	1	ENST00000233146.2:c.603A>T	p.Leu201Phe	p.L201F	ENST00000233146	NM_000251.2	201	ttA/ttT																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265429	46265429	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	16	193	0	ENST00000371998.3:c.2299A>C	p.Ser767Arg	p.S767R	ENST00000371998		767	Agt/Cgt																																																																														
BCL6	604	MSKCC	GRCh37	3	187444678	187444678	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	17	306	0	ENST00000232014.4:c.1549del	p.Ala517ProfsTer73	p.A517Pfs*73	ENST00000232014	NM_001130845.1	517	Gcc/cc																																																																														
SDHA	6389	MSKCC	GRCh37	5	233723	233723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	112	651	0	ENST00000264932.6:c.1027G>T	p.Val343Leu	p.V343L	ENST00000264932	NM_004168.2	343	Gtg/Ttg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589569	67589574	+	inframe_deletion	In_Frame_Del	DEL	TGTAGG	TGTAGG	-			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	30	193	0	ENST00000274335.5:c.1332_1337del	p.Val445_Gly446del	p.V445_G446del	ENST00000274335		444	gcTGTAGGg/gcg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180041136	180041136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	39	754	0	ENST00000261937.6:c.3263A>G	p.Asp1088Gly	p.D1088G	ENST00000261937	NM_182925.4	1088	gAc/gGc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324464	31324464	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	18	285	0	ENST00000412585.2:c.343+1G>T		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106520036	106520036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	43	269	0	ENST00000359195.3:c.2464G>A	p.Ala822Thr	p.A822T	ENST00000359195	NM_002649.2	822	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	162	686	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0032458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	95	488	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946798	71946801	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTGA	GTGA	-			P-0032458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	137	629	0	ENST00000298229.2:c.2738+2_2738+5del		p.X913_splice	ENST00000298229	NM_001567.3	913																																																																															
KDM5C	8242	MSKCC	GRCh37	X	53246387	53246387	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	221	706	1	ENST00000375401.3:c.595C>T	p.Gln199Ter	p.Q199*	ENST00000375401	NM_004187.3	199	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	143	488	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	56	722	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71949351	71949351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	62	584	0	ENST00000298229.2:c.3731C>T	p.Pro1244Leu	p.P1244L	ENST00000298229	NM_001567.3	1244	cCg/cTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15290235	15290235	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	51	691	0	ENST00000263388.2:c.3400G>T	p.Gly1134Trp	p.G1134W	ENST00000263388	NM_000435.2	1134	Ggg/Tgg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155052	55155052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	40	375	0	ENST00000257290.5:c.2761G>T	p.Ala921Ser	p.A921S	ENST00000257290	NM_006206.4	921	Gct/Tct																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149499127	149499127	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	33	513	0	ENST00000261799.4:c.2701G>T	p.Gly901Cys	p.G901C	ENST00000261799	NM_002609.3	901	Ggc/Tgc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101911584	101911584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	35	372	0	ENST00000374994.4:c.1509G>A	p.Met503Ile	p.M503I	ENST00000374994	NM_004612.2	503	atG/atA																																																																														
MED12	9968	MSKCC	GRCh37	X	70356216	70356216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	73	712	0	ENST00000374080.3:c.5111G>T	p.Trp1704Leu	p.W1704L	ENST00000374080		1704	tGg/tTg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038781	47038783	+	stop_gained	Nonsense_Mutation	ONP	GGG	GGG	TGT			P-0032479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	57	685	0	ENST00000329236.7:c.557_559delinsTGT	p.Arg186_Glu187delinsLeuTer	p.R186_E187delinsL*	ENST00000329236	NM_001204466.1	186	cGGGag/cTGTag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435471	49435471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	189	747	0	ENST00000301067.7:c.6201C>G	p.Asn2067Lys	p.N2067K	ENST00000301067	NM_003482.3	2067	aaC/aaG																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118941	115118941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	44	299	0	ENST00000257566.3:c.400C>A	p.Pro134Thr	p.P134T	ENST00000257566	NM_016569.3	134	Cct/Act																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953517	32953517	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	71	515	0	ENST00000380152.3:c.8818A>T	p.Lys2940Ter	p.K2940*	ENST00000380152		2940	Aaa/Taa																																																																														
CIC	23152	MSKCC	GRCh37	19	42791019	42791019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	21	550	0	ENST00000575354.2:c.164C>G	p.Pro55Arg	p.P55R	ENST00000575354	NM_015125.3	55	cCg/cGg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279876	46279876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	81	621	0	ENST00000371998.3:c.3802C>T	p.Gln1268Ter	p.Q1268*	ENST00000371998		1268	Caa/Taa																																																																														
FAM175A	84142	MSKCC	GRCh37	4	84384033	84384033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	100	678	0	ENST00000321945.7:c.819C>A	p.Asp273Glu	p.D273E	ENST00000321945	NM_139076.2	273	gaC/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	68	747	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
MAX	4149	MSKCC	GRCh37	14	65560500	65560500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	83	574	0	ENST00000358664.4:c.97C>T	p.Arg33Ter	p.R33*	ENST00000358664	NM_002382.4	33	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	58	400	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576093	88576093	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	76	764	0	ENST00000360948.2:c.1580A>G	p.Asp527Gly	p.D527G	ENST00000360948	NM_001012338.2	527	gAc/gGc																																																																														
ABL1	25	MSKCC	GRCh37	9	133750362	133750362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	52	559	0	ENST00000318560.5:c.1193G>T	p.Gly398Val	p.G398V	ENST00000318560	NM_005157.4	398	gGa/gTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435616	18435616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	31	307	0	ENST00000266497.5:c.601G>C	p.Val201Leu	p.V201L	ENST00000266497		201	Gtg/Ctg																																																																														
NF1	4763	MSKCC	GRCh37	17	29556307	29556307	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	75	661	0	ENST00000358273.4:c.2674A>C	p.Ser892Arg	p.S892R	ENST00000358273	NM_001042492.2	892	Agc/Cgc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78899198	78899198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	66	545	0	ENST00000306801.3:c.2837G>T	p.Gly946Val	p.G946V	ENST00000306801	NM_020761.2	946	gGa/gTa																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78899203	78899203	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	59	563	1	ENST00000306801.3:c.2842A>T	p.Lys948Ter	p.K948*	ENST00000306801	NM_020761.2	948	Aaa/Taa																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778261	27778261	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0032600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	35	427	0	ENST00000369163.2:c.410G>C	p.Ter137SerextTer6	p.*137Sext*6	ENST00000369163	NM_003536.2	137	tGa/tCa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929271	44929271	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	82	786	0	ENST00000377967.4:c.2371A>G	p.Asn791Asp	p.N791D	ENST00000377967	NM_021140.2	791	Aat/Gat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	14	478	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
APC	324	MSKCC	GRCh37	5	112154907	112154907	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	29	665	0	ENST00000257430.4:c.1178C>G	p.Ser393Ter	p.S393*	ENST00000257430	NM_000038.5	393	tCa/tGa																																																																														
RARA	5914	MSKCC	GRCh37	17	38510560	38510560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	30	487	0	ENST00000254066.5:c.814C>G	p.Arg272Gly	p.R272G	ENST00000254066	NM_000964.3	272	Cgg/Ggg																																																																														
TET1	80312	MSKCC	GRCh37	10	70451518	70451518	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	29	690	0	ENST00000373644.4:c.6358G>C	p.Val2120Leu	p.V2120L	ENST00000373644	NM_030625.2	2120	Gtg/Ctg																																																																														
ATM	472	MSKCC	GRCh37	11	108127045	108127045	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	10	465	0	ENST00000278616.4:c.2228C>A	p.Ser743Ter	p.S743*	ENST00000278616	NM_000051.3	743	tCa/tAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373623	118373623	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	13	483	0	ENST00000534358.1:c.7016A>G	p.His2339Arg	p.H2339R	ENST00000534358	NM_005933.3	2339	cAt/cGt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61719492	61719492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	14	584	0	ENST00000401558.2:c.1691C>G	p.Thr564Ser	p.T564S	ENST00000401558	NM_003400.3	564	aCt/aGt																																																																														
ATRX	546	MSKCC	GRCh37	X	76888739	76888739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	15	320	0	ENST00000373344.5:c.5090G>C	p.Ser1697Thr	p.S1697T	ENST00000373344	NM_000489.3	1697	aGt/aCt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0032634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	19	509	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	24	447	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	215	300	0				ENST00000310581	NM_198253.2																																																																																
SDHB	6390	MSKCC	GRCh37	1	17349180	17349180	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	356	562	0	ENST00000375499.3:c.688C>G	p.Arg230Gly	p.R230G	ENST00000375499	NM_003000.2	230	Cgc/Ggc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36217200	36217200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	71	772	3	ENST00000222270.7:c.3949G>A	p.Glu1317Lys	p.E1317K	ENST00000222270	NM_014727.1	1317	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	93	861	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	54	486	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0032671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	80	843	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	66	311	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084145	47084146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	110	489	0	ENST00000409792.3:c.7143dupC	p.Ser2382LeufsTer47	p.S2382Lfs*47	ENST00000409792	NM_014159.6	2381	-/C																																																																														
MTOR	2475	MSKCC	GRCh37	1	11292537	11292537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	32	365	0	ENST00000361445.4:c.2470A>G	p.Ile824Val	p.I824V	ENST00000361445	NM_004958.3	824	Atc/Gtc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162722920	162722920	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	37	626	0	ENST00000367921.3:c.118C>T	p.Gln40Ter	p.Q40*	ENST00000367921	NM_006182.2	40	Cag/Tag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098922	47098924	+	frameshift_variant	Frame_Shift_Del	DEL	TAG	TAG	AC			P-0032676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	141	670	2	ENST00000409792.3:c.6350_6352delinsGT	p.Ser2117CysfsTer30	p.S2117Cfs*30	ENST00000409792	NM_014159.6	2117	tCTAca/tGTca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0032704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	353	656	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89156918	89156920	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0032704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	202	541	0	ENST00000336596.2:c.27_29del	p.Leu11del	p.L11del	ENST00000336596	NM_005233.5	7	aTCCtc/atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	103	455	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	154	329	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	115	434	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791757	42791757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	93	519	0	ENST00000575354.2:c.643C>T	p.Arg215Trp	p.R215W	ENST00000575354	NM_015125.3	215	Cgg/Tgg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	67	402	2	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40877391	40877391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	137	550	0	ENST00000373198.4:c.2305G>A	p.Val769Met	p.V769M	ENST00000373198	NM_133170.3	769	Gtg/Atg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26828881	26828881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	33	270	0	ENST00000381527.3:c.103G>A	p.Val35Ile	p.V35I	ENST00000381527	NM_001260.1	35	Gtc/Atc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724436	43724436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	172	664	0	ENST00000382044.4:c.3631C>A	p.Pro1211Thr	p.P1211T	ENST00000382044	NM_001141980.1	1211	Cca/Aca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821615	72821638	+	inframe_deletion	In_Frame_Del	DEL	GCCACCGCCGCCGCCGCCGCCACT	GCCACCGCCGCCGCCGCCGCCACT	-			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	23	45	0	ENST00000268489.5:c.10537_10560del	p.Ser3513_Gly3520del	p.S3513_G3520del	ENST00000268489	NM_006885.3	3513	AGTGGCGGCGGCGGCGGCGGTGGC/-																																																																														
APC	324	MSKCC	GRCh37	5	112175511	112175511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	154	332	0	ENST00000257430.4:c.4220G>T	p.Ser1407Ile	p.S1407I	ENST00000257430	NM_000038.5	1407	aGt/aTt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056509	26056509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	45	211	0	ENST00000343677.2:c.148G>A	p.Ala50Thr	p.A50T	ENST00000343677	NM_005319.3	50	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	310	511	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	324	742	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
RB1	5925	MSKCC	GRCh37	13	48934152	48934152	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0032747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	103	348	0	ENST00000267163.4:c.610delG		p.X204_splice	ENST00000267163	NM_000321.2	204																																																																															
BRCA2	675	MSKCC	GRCh37	13	32893231	32893231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	12	318	0	ENST00000380152.3:c.85C>T	p.Leu29Phe	p.L29F	ENST00000380152		29	Ctt/Ttt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993723	72993723	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	126	554	0	ENST00000268489.5:c.322C>G	p.Leu108Val	p.L108V	ENST00000268489	NM_006885.3	108	Ctg/Gtg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	94	403	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55273029	55273029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	198	621	0	ENST00000275493.2:c.3352G>A	p.Ala1118Thr	p.A1118T	ENST00000275493	NM_005228.3	1118	Gcg/Acg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	136	322	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	136	322	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	203	745	0	ENST00000171111.5:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000171111	NM_203500.1	422	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	136	322	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	253	443	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
TET2	54790	MSKCC	GRCh37	4	106156840	106156840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	64	350	0	ENST00000380013.4:c.1741C>T	p.Arg581Cys	p.R581C	ENST00000380013	NM_001127208.2	581	Cgt/Tgt																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246078863	246078863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	212	616	0	ENST00000388985.4:c.782G>T	p.Cys261Phe	p.C261F	ENST00000388985		261	tGt/tTt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929117	32929117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	130	488	0	ENST00000380152.3:c.7127C>T	p.Ala2376Val	p.A2376V	ENST00000380152		2376	gCa/gTa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15278210	15278210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	138	561	0	ENST00000263388.2:c.5212G>C	p.Gly1738Arg	p.G1738R	ENST00000263388	NM_000435.2	1738	Ggc/Cgc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2979403	2979403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	157	601	0	ENST00000396946.4:c.844G>A	p.Glu282Lys	p.E282K	ENST00000396946	NM_032415.4	282	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579476	7579477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	151	615	0	ENST00000269305.4:c.210dup	p.Pro71SerfsTer78	p.P71Sfs*78	ENST00000269305	NM_001126112.2	70	-/T																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	145	486	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	205	612	0	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa																																																																														
RET	5979	MSKCC	GRCh37	10	43608310	43608311	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	171	993	1	ENST00000355710.3:c.1658_1659delinsTT	p.Arg553Ile	p.R553I	ENST00000355710	NM_020975.4	553	aGG/aTT																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741924	17741924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	65	157	0	ENST00000250003.3:c.595G>C	p.Ala199Pro	p.A199P	ENST00000250003	NM_002478.4	199	Gcg/Ccg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348125	348126	+	missense_variant	Missense_Mutation	DNP	CC	CC	TG			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	211	765	1	ENST00000262320.3:c.1380_1381delinsCA	p.Asp461Asn	p.D461N	ENST00000262320	NM_003502.3	460	cgGGat/cgCAat																																																																														
FLCN	201163	MSKCC	GRCh37	17	17122347	17122347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	67	489	0	ENST00000285071.4:c.1048C>T	p.Arg350Trp	p.R350W	ENST00000285071	NM_144997.5	350	Cgg/Tgg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610441	10610442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	255	730	0	ENST00000171111.5:c.268dup	p.Ala90GlyfsTer37	p.A90Gfs*37	ENST00000171111	NM_203500.1	90	gcc/gGcc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661202	227661202	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	170	823	0	ENST00000305123.5:c.2253C>A	p.Tyr751Ter	p.Y751*	ENST00000305123	NM_005544.2	751	taC/taA																																																																														
ATR	545	MSKCC	GRCh37	3	142231194	142231194	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	69	608	0	ENST00000350721.4:c.4760A>G	p.His1587Arg	p.H1587R	ENST00000350721	NM_001184.3	1587	cAt/cGt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671646	30671646	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	358	766	0	ENST00000376406.3:c.5314G>T	p.Glu1772Ter	p.E1772*	ENST00000376406	NM_014641.2	1772	Gag/Tag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882292	89882292	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	23	439	0	ENST00000389301.3:c.182T>G	p.Leu61Trp	p.L61W	ENST00000389301	NM_000135.2	61	tTg/tGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	62	549	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1800982	1800982	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0032852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	29	668	0	ENST00000260795.2:c.111A>C	p.Glu37Asp	p.E37D	ENST00000260795		37	gaA/gaC																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55161345	55161345	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	31	396	0	ENST00000257290.5:c.3176T>G	p.Phe1059Cys	p.F1059C	ENST00000257290	NM_006206.4	1059	tTc/tGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971146	21971200	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCA	TTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCA	-			P-0032852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	38	311	0	ENST00000304494.5:c.158_212del	p.Met53ThrfsTer75	p.M53Tfs*75	ENST00000304494	NM_000077.4	53	aTGATGGGCAGCGCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCGGAGCCCAAc/ac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971146	21971200	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCA	TTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCA	-			P-0032852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	38	311	0	ENST00000304494.5:c.158_212del	p.Met53ThrfsTer75	p.M53Tfs*75	ENST00000304494	NM_000077.4	53	aTGATGGGCAGCGCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCGGAGCCCAAc/ac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971146	21971200	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCA	TTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCA	-			P-0032852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	38	311	0	ENST00000304494.5:c.158_212del	p.Met53ThrfsTer75	p.M53Tfs*75	ENST00000304494	NM_000077.4	53	aTGATGGGCAGCGCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCGGAGCCCAAc/ac																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87482182	87482182	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	42	638	0	ENST00000277120.3:c.1469A>C	p.Asp490Ala	p.D490A	ENST00000277120		490	gAt/gCt																																																																														
ALK	238	MSKCC	GRCh37	2	29498313	29498313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	181	656	0	ENST00000389048.3:c.1867G>A	p.Val623Met	p.V623M	ENST00000389048	NM_004304.4	623	Gtg/Atg																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118165949	118165950	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0032871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	200	517	1	ENST00000369448.3:c.459_460delinsAG	p.Ser153_Leu154delinsArgVal	p.S153_L154delinsRV	ENST00000369448	NM_017709.3	153	agCCtg/agAGtg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56390445	56390445	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	173	395	0	ENST00000348428.3:c.1184T>C	p.Val395Ala	p.V395A	ENST00000348428	NM_006785.3	395	gTg/gCg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910758	29910774	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGACCTGGGGACCCT	GTGGACCTGGGGACCCT	-			P-0032871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	120	870	0	ENST00000376809.5:c.299_315del	p.Val100AlafsTer71	p.V100Afs*71	ENST00000376809	NM_002116.7	100	GTGGACCTGGGGACCCTg/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	134	308	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	510	627	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
AR	367	MSKCC	GRCh37	X	66765159	66765185	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0032988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	26	122	0	ENST00000374690.3:c.213_239del	p.Gln72_Gln80del	p.Q72_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184589	11184589	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	290	630	0	ENST00000361445.4:c.6628G>C	p.Ala2210Pro	p.A2210P	ENST00000361445	NM_004958.3	2210	Gcc/Ccc																																																																														
FH	2271	MSKCC	GRCh37	1	241672038	241672038	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	661	487	0	ENST00000366560.3:c.603A>G	p.Ile201Met	p.I201M	ENST00000366560	NM_000143.3	201	atA/atG																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39647358	39647358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	163	399	0	ENST00000262039.4:c.2530G>A	p.Asp844Asn	p.D844N	ENST00000262039	NM_002647.2	844	Gat/Aat																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52582102	52582102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	150	291	0	ENST00000394830.3:c.4726G>A	p.Ala1576Thr	p.A1576T	ENST00000394830	NM_018313.4	1576	Gca/Aca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945671	38945671	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	144	331	0	ENST00000357387.3:c.4555A>T	p.Asn1519Tyr	p.N1519Y	ENST00000357387	NM_152756.3	1519	Aac/Tac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	147	306	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	42	316	0				ENST00000310581	NM_198253.2																																																																																
ARID2	196528	MSKCC	GRCh37	12	46125010	46125011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	116	220	0	ENST00000334344.6:c.198dup	p.Asn67GlufsTer8	p.N67Efs*8	ENST00000334344	NM_152641.2	66	aag/aaGg																																																																														
CIC	23152	MSKCC	GRCh37	19	42796945	42796945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	124	626	0	ENST00000575354.2:c.3403C>G	p.Pro1135Ala	p.P1135A	ENST00000575354	NM_015125.3	1135	Ccc/Gcc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16262370	16262371	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	23	263	0	ENST00000375759.3:c.9635_9636delinsTT	p.Ala3212Val	p.A3212V	ENST00000375759	NM_015001.2	3212	gCC/gTT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720658	89720658	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	16	242	0	ENST00000371953.3:c.809T>A	p.Met270Lys	p.M270K	ENST00000371953	NM_000314.4	270	aTg/aAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15285080	15285080	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	48	536	0	ENST00000263388.2:c.4535T>G	p.Val1512Gly	p.V1512G	ENST00000263388	NM_000435.2	1512	gTg/gGg																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750437	41750437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	47	394	1	ENST00000226382.2:c.191C>T	p.Ser64Phe	p.S64F	ENST00000226382	NM_003924.3	64	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	18	217	0				ENST00000310581	NM_198253.2																																																																																
MDC1	9656	MSKCC	GRCh37	6	30673073	30673073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	58	608	0	ENST00000376406.3:c.3887C>T	p.Ser1296Phe	p.S1296F	ENST00000376406	NM_014641.2	1296	tCc/tTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	36	344	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
AR	367	MSKCC	GRCh37	X	66937404	66937404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	53	320	0	ENST00000374690.3:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000374690	NM_000044.3	753	cGa/cAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0033110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	19	525	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576858	7576858	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	84	733	8	ENST00000269305.4:c.988del	p.Leu330PhefsTer15	p.L330Ffs*15	ENST00000269305	NM_001126112.2	330	Ctt/tt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	197	496	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023750	27023750	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	133	343	0	ENST00000324856.7:c.856A>T	p.Thr286Ser	p.T286S	ENST00000324856	NM_006015.4	286	Act/Tct																																																																														
ATM	472	MSKCC	GRCh37	11	108121516	108121516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	165	401	1	ENST00000278616.4:c.1324C>T	p.Leu442Phe	p.L442F	ENST00000278616	NM_000051.3	442	Ctt/Ttt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163408	32163408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	255	636	0	ENST00000375023.3:c.5818C>T	p.Arg1940Cys	p.R1940C	ENST00000375023	NM_004557.3	1940	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0033142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	221	577	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	215	334	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																														
ACVR1	90	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	70	240	0	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913409		P-0033142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	121	349	0	ENST00000349496.5:c.134C>G	p.Ser45Cys	p.S45C	ENST00000349496	NM_001904.3	45	tCt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023849	27023862	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCCCAGGACGG	GGGCCCCAGGACGG	-			P-0033142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	60	189	0	ENST00000324856.7:c.959_972delCCCAGGACGGGGGC	p.Pro320ArgfsTer75	p.P320Rfs*75	ENST00000324856	NM_006015.4	319	GGGCCCCAGGACGGg/g																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56189357	56189357	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0033142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	202	478	0	ENST00000399503.3:c.4390-1G>C		p.X1464_splice	ENST00000399503	NM_005921.1	1464																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67589593	67589594	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAC			P-0033142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	99	207	0	ENST00000274335.5:c.1358_1360dup	p.Asn453dup	p.N453dup	ENST00000274335		453	-/AAC																																																																														
PARK2	5071	MSKCC	GRCh37	6	162206851	162206851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	56	397	0	ENST00000366898.1:c.824G>A	p.Arg275Gln	p.R275Q	ENST00000366898	NM_004562.2	275	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023212	27023222	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGGGCCCTA	CGCGGGCCCTA	G			P-0033142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	47	139	0	ENST00000324856.7:c.318_328delinsG	p.Asn106LysfsTer5	p.N106Kfs*5	ENST00000324856	NM_006015.4	106	aaCGCGGGCCCTAgg/aaGgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	332	751	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417337	139417337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	261	677	0	ENST00000277541.6:c.707C>T	p.Thr236Met	p.T236M	ENST00000277541	NM_017617.3	236	aCg/aTg																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926888	112926888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	436	630	2	ENST00000351677.2:c.1508G>T	p.Gly503Val	p.G503V	ENST00000351677	NM_002834.3	503	gGg/gTg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249315	110249315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	423	850	0	ENST00000374672.4:c.1258C>T	p.His420Tyr	p.H420Y	ENST00000374672	NM_004235.4	420	Cac/Tac																																																																														
APC	324	MSKCC	GRCh37	5	112164604	112164604	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	224	445	0	ENST00000257430.4:c.1682delA	p.Lys561ArgfsTer9	p.K561Rfs*9	ENST00000257430	NM_000038.5	560	Aaa/aa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023288	31023288	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	290	602	0	ENST00000375687.4:c.2773C>T	p.Gln925Ter	p.Q925*	ENST00000375687	NM_015338.5	925	Cag/Tag																																																																														
SDHB	6390	MSKCC	GRCh37	1	17380502	17380502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	297	576	0	ENST00000375499.3:c.13G>T	p.Val5Phe	p.V5F	ENST00000375499	NM_003000.2	5	Gtc/Ttc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163306620	163306620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	285	450	0	ENST00000271452.3:c.417G>A	p.Met139Ile	p.M139I	ENST00000271452	NM_145697.2	139	atG/atA																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71940144	71940144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	305	680	0	ENST00000298229.2:c.529G>T	p.Gly177Trp	p.G177W	ENST00000298229	NM_001567.3	177	Ggg/Tgg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	441001	441001	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	229	422	0	ENST00000399788.2:c.1757T>G	p.Phe586Cys	p.F586C	ENST00000399788	NM_001042603.1	586	tTc/tGc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005332	29005332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	368	724	2	ENST00000282397.4:c.929C>A	p.Thr310Asn	p.T310N	ENST00000282397	NM_002019.4	310	aCt/aAt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528044	103528044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	206	437	0	ENST00000355739.4:c.3352G>C	p.Ala1118Pro	p.A1118P	ENST00000355739	NM_000123.3	1118	Gct/Cct																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610304	10610304	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	404	814	0	ENST00000171111.5:c.406del	p.Leu136SerfsTer21	p.L136Sfs*21	ENST00000171111	NM_203500.1	136	Ctc/tc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225360629	225360632	+	frameshift_variant	Frame_Shift_Del	DEL	GTGT	GTGT	-			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	301	528	0	ENST00000264414.4:c.1759_1762del	p.Thr587GlyfsTer12	p.T587Gfs*12	ENST00000264414	NM_003590.4	587	ACACgg/gg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561088	9561088	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	230	520	0	ENST00000353224.5:c.694T>A	p.Phe232Ile	p.F232I	ENST00000353224	NM_177990.2	232	Ttc/Atc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390109	89390109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	238	447	0	ENST00000336596.2:c.858G>T	p.Lys286Asn	p.K286N	ENST00000336596	NM_005233.5	286	aaG/aaT																																																																														
KDR	3791	MSKCC	GRCh37	4	55968529	55968529	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	275	525	0	ENST00000263923.4:c.2134G>T	p.Gly712Cys	p.G712C	ENST00000263923	NM_002253.2	712	Ggc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112174590	112174590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	295	538	0	ENST00000257430.4:c.3299C>T	p.Ser1100Phe	p.S1100F	ENST00000257430	NM_000038.5	1100	tCt/tTt																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056715	180056715	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	208	619	0	ENST00000261937.6:c.797G>C	p.Trp266Ser	p.W266S	ENST00000261937	NM_182925.4	266	tGg/tCg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818288	32818288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	269	586	1	ENST00000354258.4:c.1237G>A	p.Glu413Lys	p.E413K	ENST00000354258	NM_000593.5	413	Gaa/Aaa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109309858	109309858	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	427	671	0	ENST00000436639.2:c.1457A>T	p.Gln486Leu	p.Q486L	ENST00000436639	NM_014454.2	486	cAg/cTg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141549486	141549486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	220	569	0	ENST00000220592.5:c.2102G>A	p.Gly701Glu	p.G701E	ENST00000220592	NM_012154.3	701	gGg/gAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486065	8486065	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	301	681	0	ENST00000356435.5:c.2752C>A	p.Pro918Thr	p.P918T	ENST00000356435		918	Cca/Aca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092685	27092711	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TCTCTCACTTTCCATCTTCTTCCTTAG	TCTCTCACTTTCCATCTTCTTCCTTAG	-			P-0033168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	52	315	0	ENST00000324856.7:c.2733-27_2733-1del		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																															
PTEN	5728	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	53	462	0	ENST00000371953.3:c.376G>A	p.Ala126Thr	p.A126T	ENST00000371953	NM_000314.4	126	Gct/Act																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71949372	71949372	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	45	601	0	ENST00000298229.2:c.3752T>A	p.Leu1251Gln	p.L1251Q	ENST00000298229	NM_001567.3	1251	cTg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	42	584	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662402	67662402	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	51	884	0	ENST00000264010.4:c.1649del	p.Phe550SerfsTer34	p.F550Sfs*34	ENST00000264010	NM_006565.3	550	Ttc/tc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591259	67591261	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0033168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	25	478	0	ENST00000274335.5:c.1759_1761delAAA	p.Lys587del	p.K587del	ENST00000274335		586	cAAAaa/caa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152008892	152008892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	82	445	0	ENST00000262189.6:c.730G>T	p.Asp244Tyr	p.D244Y	ENST00000262189	NM_170606.2	244	Gat/Tat																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38271264	38271264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	44	848	1	ENST00000425967.3:c.2444G>A	p.Arg815Gln	p.R815Q	ENST00000425967	NM_001174067.1	815	cGg/cAg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589283	67589292	+	stop_gained	Nonsense_Mutation	DEL	TACTTTATCC	TACTTTATCC	A			P-0033168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	20	287	0	ENST00000274335.5:c.1271_1280delinsA	p.Leu424_Pro427delinsTer	p.L424_P427delins*	ENST00000274335		424	tTACTTTATCCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	128	630	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	168	476	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CIC	23152	MSKCC	GRCh37	19	42794583	42794583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	63	803	1	ENST00000575354.2:c.1663G>A	p.Gly555Arg	p.G555R	ENST00000575354	NM_015125.3	555	Gga/Aga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971095	21971095	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	42	436	0	ENST00000304494.5:c.263del	p.Glu88GlyfsTer58	p.E88Gfs*58	ENST00000304494	NM_000077.4	88	gAg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971095	21971095	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	42	436	0	ENST00000304494.5:c.263del	p.Glu88GlyfsTer58	p.E88Gfs*58	ENST00000304494	NM_000077.4	88	gAg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971095	21971095	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	42	436	0	ENST00000304494.5:c.263del	p.Glu88GlyfsTer58	p.E88Gfs*58	ENST00000304494	NM_000077.4	88	gAg/gg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137293675	137293675	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	124	751	0	ENST00000481739.1:c.226T>G	p.Ser76Ala	p.S76A	ENST00000481739	NM_002957.4	76	Tcc/Gcc																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225791	26225791	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0033179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	139	286	0	ENST00000360408.1:c.409T>A	p.Ter137ArgextTer?	p.*137Rext*?	ENST00000360408	NM_003532.2	137	Tga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	79	533	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	125	778	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991697	72991699	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	11	153	1	ENST00000268489.5:c.2346_2348del	p.Ala784del	p.A784del	ENST00000268489	NM_006885.3	782	gcGGCa/gca																																																																														
APC	324	MSKCC	GRCh37	5	112173956	112173957	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	66	339	0	ENST00000257430.4:c.2666_2667del	p.Lys889SerfsTer22	p.K889Sfs*22	ENST00000257430	NM_000038.5	889	AAa/a																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602367	10602367	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	142	705	3	ENST00000171111.5:c.1211C>A	p.Ser404Ter	p.S404*	ENST00000171111	NM_203500.1	404	tCg/tAg																																																																														
YAP1	10413	MSKCC	GRCh37	11	102080285	102080286	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	93	483	0	ENST00000282441.5:c.1022_1023del	p.Pro341GlnfsTer9	p.P341Qfs*9	ENST00000282441	NM_001130145.2	341	cCA/c																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912810	32912811	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	72	432	0	ENST00000380152.3:c.4319_4320del	p.Lys1440ArgfsTer4	p.K1440Rfs*4	ENST00000380152		1440	AAa/a																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52620583	52620583	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0033183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	126	540	0	ENST00000394830.3:c.3170C>G	p.Ser1057Ter	p.S1057*	ENST00000394830	NM_018313.4	1057	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	212	741	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509127	66509127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	20	257	0	ENST00000273854.3:c.200G>C	p.Arg67Pro	p.R67P	ENST00000273854	NM_004439.5	67	cGc/cCc																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983148	201983148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	75	389	0	ENST00000359651.3:c.997A>G	p.Met333Val	p.M333V	ENST00000359651		333	Atg/Gtg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206651113	206651113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	76	565	0	ENST00000367120.3:c.723G>T	p.Lys241Asn	p.K241N	ENST00000367120	NM_014002.3	241	aaG/aaT																																																																														
CCND2	894	MSKCC	GRCh37	12	4409092	4409092	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	70	271	0	ENST00000261254.3:c.787C>T	p.Gln263Ter	p.Q263*	ENST00000261254	NM_001759.3	263	Cag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246497	46246497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	28	230	0	ENST00000334344.6:c.4591C>T	p.Pro1531Ser	p.P1531S	ENST00000334344	NM_152641.2	1531	Cca/Tca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49439712	49439712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	74	506	0	ENST00000301067.7:c.4732A>G	p.Lys1578Glu	p.K1578E	ENST00000301067	NM_003482.3	1578	Aaa/Gaa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89857825	89857825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	69	481	0	ENST00000389301.3:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000389301	NM_000135.2	449	Gca/Aca																																																																														
RASA1	5921	MSKCC	GRCh37	5	86642488	86642488	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	34	302	0	ENST00000274376.6:c.1050-1G>C		p.X350_splice	ENST00000274376	NM_002890.2	350																																																																															
EPHA7	2045	MSKCC	GRCh37	6	93965668	93965668	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	47	382	0	ENST00000369303.4:c.2260T>C	p.Tyr754His	p.Y754H	ENST00000369303	NM_004440.3	754	Tat/Cat																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995517	68995517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	93	574	1	ENST00000288368.4:c.1921G>T	p.Gly641Cys	p.G641C	ENST00000288368	NM_024870.2	641	Ggt/Tgt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101900243	101900243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	57	291	0	ENST00000374994.4:c.677G>T	p.Gly226Val	p.G226V	ENST00000374994	NM_004612.2	226	gGa/gTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	336	356	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	155	445	0				ENST00000310581	NM_198253.2																																																																																
AXIN2	8313	MSKCC	GRCh37	17	63532589	63532589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	341	1140	1	ENST00000307078.5:c.1990G>A	p.Gly664Arg	p.G664R	ENST00000307078	NM_004655.3	664	Ggg/Agg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799475	72799475	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	359	920	0	ENST00000325599.8:c.1694A>T	p.Asn565Ile	p.N565I	ENST00000325599	NM_018130.2	565	aAt/aTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538172	187538172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	263	749	0	ENST00000441802.2:c.9062C>T	p.Pro3021Leu	p.P3021L	ENST00000441802	NM_005245.3	3021	cCa/cTa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492907	8492907	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	129	780	0	ENST00000356435.5:c.2422G>C	p.Asp808His	p.D808H	ENST00000356435		808	Gat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	576	357	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0033294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	593	859	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717630	89717630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	652	464	1	ENST00000371953.3:c.655C>T	p.Gln219Ter	p.Q219*	ENST00000371953	NM_000314.4	219	Cag/Tag																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156660	2156660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	246	808	0	ENST00000434045.2:c.262C>A	p.Leu88Met	p.L88M	ENST00000434045	NM_001127598.1	88	Ctg/Atg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11272502	11272502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	168	407	0	ENST00000361445.4:c.3428C>A	p.Thr1143Lys	p.T1143K	ENST00000361445	NM_004958.3	1143	aCg/aAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16256972	16256972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	260	740	0	ENST00000375759.3:c.4237G>A	p.Asp1413Asn	p.D1413N	ENST00000375759	NM_015001.2	1413	Gac/Aac																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156838008	156838008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	333	1155	1	ENST00000524377.1:c.541G>A	p.Gly181Arg	p.G181R	ENST00000524377	NM_002529.3	181	Ggg/Agg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187535464	187535464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	117	437	0	ENST00000441802.2:c.9110T>C	p.Leu3037Pro	p.L3037P	ENST00000441802	NM_005245.3	3037	cTt/cCt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8319956	8319956	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6	212	285	0	ENST00000356435.5:c.5545G>C	p.Gly1849Arg	p.G1849R	ENST00000356435		1849	Gga/Cga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	31	283	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	92	666	1	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376262	225376262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	77	380	0	ENST00000264414.4:c.692C>T	p.Ser231Leu	p.S231L	ENST00000264414	NM_003590.4	231	tCa/tTa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376271	225376271	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	69	339	0	ENST00000264414.4:c.683A>G	p.Asn228Ser	p.N228S	ENST00000264414	NM_003590.4	228	aAt/aGt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159038	143159038	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	26	287	0	ENST00000262992.4:c.815A>G	p.His272Arg	p.H272R	ENST00000262992	NM_001101669.1	272	cAc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	560	871	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	1509	447	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518264	204518271	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGAAAT	CAAGAAAT	-			P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	485	455	0	ENST00000367182.3:c.927_934del	p.Lys310Ter	p.K310*	ENST00000367182	NM_001278516.1	309	tgCAAGAAATtt/tgtt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118391571	118391571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	43	344	1	ENST00000534358.1:c.11484G>T	p.Lys3828Asn	p.K3828N	ENST00000534358	NM_005933.3	3828	aaG/aaT																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144467	11144467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	135	679	0	ENST00000344626.4:c.3799G>A	p.Gly1267Ser	p.G1267S	ENST00000344626	NM_003072.3	1267	Ggc/Agc																																																																														
AKT2	208	MSKCC	GRCh37	19	40741019	40741020	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	144	824	1	ENST00000392038.2:c.1298_1299delinsGT	p.Glu433Gly	p.E433G	ENST00000392038	NM_001626.4	433	gAG/gGT																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72890197	72890197	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0033320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	58	380	0	ENST00000325599.8:c.485A>T	p.Gln162Leu	p.Q162L	ENST00000325599	NM_018130.2	162	cAg/cTg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	59	508	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468289	50468289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	45	472	0	ENST00000331340.3:c.1524C>A	p.His508Gln	p.H508Q	ENST00000331340	NM_006060.4	508	caC/caA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	1194	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	557	823	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	570	831	2	ENST00000346208.3:c.404delC	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987067	36987067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	917	867	2	ENST00000354822.5:c.622C>T	p.Arg208Ter	p.R208*	ENST00000354822	NM_001079668.2	208	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	374	311	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	374	311	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	374	311	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
MYOD1	4654	MSKCC	GRCh37	11	17741739	17741739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	204	696	2	ENST00000250003.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000250003	NM_002478.4	137	tCg/tTg																																																																														
CCNE1	898	MSKCC	GRCh37	19	30303934	30303934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	187	490	0	ENST00000262643.3:c.170G>T	p.Cys57Phe	p.C57F	ENST00000262643	NM_001238.2	57	tGt/tTt																																																																														
CENPA	1058	MSKCC	GRCh37	2	27009147	27009147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	150	103	1	ENST00000335756.4:c.83G>A	p.Arg28Gln	p.R28Q	ENST00000335756	NM_001809.3	28	cGg/cAg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46279815	46279847	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCA	-			P-0033356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1359	294	614	0	ENST00000371998.3:c.3759_3791del	p.Gln1266_Gln1276del	p.Q1266_Q1276del	ENST00000371998		1247	atGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAg/atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0033380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	26	539	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987196	36987199	+	frameshift_variant	Frame_Shift_Del	DEL	TGCC	TGCC	GCA			P-0033380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	54	1173	2	ENST00000354822.5:c.490_493delinsTGC	p.Gly164CysfsTer2	p.G164Cfs*2	ENST00000354822	NM_001079668.2	164	GGCAtg/TGCtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	378	1038	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	305	602	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518024	187518024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147405100		P-0033383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	152	776	3	ENST00000441802.2:c.12670G>A	p.Ala4224Thr	p.A4224T	ENST00000441802	NM_005245.3	4224	Gct/Act																																																																														
RB1	5925	MSKCC	GRCh37	13	49030378	49030378	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	235	380	0	ENST00000267163.4:c.1853C>A	p.Ser618Ter	p.S618*	ENST00000267163	NM_000321.2	618	tCa/tAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827804	72827804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	519	1023	0	ENST00000268489.5:c.8777C>T	p.Pro2926Leu	p.P2926L	ENST00000268489	NM_006885.3	2926	cCg/cTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118993	70119015	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGAGGAGGCCACGGAGCAGAC	GCAGAGGAGGCCACGGAGCAGAC	-			P-0033398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	38	761	0	ENST00000245479.2:c.568_590del	p.Glu190HisfsTer54	p.E190Hfs*54	ENST00000245479	NM_000346.3	189	GCAGAGGAGGCCACGGAGCAGACg/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	63	164	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624260	89624260	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	29	158	0	ENST00000371953.3:c.34A>C	p.Asn12His	p.N12H	ENST00000371953	NM_000314.4	12	Aac/Cac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	121	308	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59763282	59763282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	160	622	0	ENST00000259008.2:c.2820G>C	p.Lys940Asn	p.K940N	ENST00000259008	NM_032043.2	940	aaG/aaC																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299983	15299983	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	136	616	0	ENST00000263388.2:c.1195G>A	p.Ala399Thr	p.A399T	ENST00000263388	NM_000435.2	399	Gcc/Acc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715660	30715660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	96	388	0	ENST00000359013.4:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000359013	NM_001024847.2	465	Gag/Aag																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137527318	137527318	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	130	625	0	ENST00000367739.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000367739	NM_000416.2	110	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1280314	1280314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	154	702	0	ENST00000310581.5:c.1909G>A	p.Asp637Asn	p.D637N	ENST00000310581	NM_198253.2	637	Gac/Aac																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56801452	56801452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	100	421	1	ENST00000337432.4:c.956G>A	p.Arg319Gln	p.R319Q	ENST00000337432	NM_058216.2	319	cGa/cAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69030850	69030850	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150128151		P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	95	415	0	ENST00000288368.4:c.3392C>T	p.Ser1131Leu	p.S1131L	ENST00000288368	NM_024870.2	1131	tCg/tTg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86667950	86667950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	92	326	0	ENST00000274376.6:c.1714C>G	p.Leu572Val	p.L572V	ENST00000274376	NM_002890.2	572	Ctg/Gtg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733140	74733140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	128	475	0	ENST00000359995.5:c.103G>A	p.Glu35Lys	p.E35K	ENST00000359995	NM_001195427.1	35	Gag/Aag																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176132984	176132984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	121	478	0	ENST00000367669.3:c.609G>C	p.Lys203Asn	p.K203N	ENST00000367669	NM_022457.5	203	aaG/aaC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49441813	49441813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	120	485	0	ENST00000301067.7:c.4171G>A	p.Glu1391Lys	p.E1391K	ENST00000301067	NM_003482.3	1391	Gag/Aag																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112919974	112919974	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	87	415	0	ENST00000351677.2:c.1189A>T	p.Thr397Ser	p.T397S	ENST00000351677	NM_002834.3	397	Acg/Tcg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066703	30066703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	101	407	0	ENST00000331968.5:c.2428C>T	p.His810Tyr	p.H810Y	ENST00000331968	NM_002742.2	810	Cat/Tat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690602	88690602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	95	427	0	ENST00000360948.2:c.428C>T	p.Ser143Leu	p.S143L	ENST00000360948	NM_001012338.2	143	tCg/tTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467754	99467754	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	75	273	0	ENST00000268035.6:c.2623G>A	p.Asp875Asn	p.D875N	ENST00000268035	NM_000875.3	875	Gat/Aat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993987	72993987	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	143	641	0	ENST00000268489.5:c.58C>T	p.Gln20Ter	p.Q20*	ENST00000268489	NM_006885.3	20	Cag/Tag																																																																														
MSI2	124540	MSKCC	GRCh37	17	55334154	55334160	+	frameshift_variant	Frame_Shift_Del	DEL	GCACGAC	GCACGAC	-			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	104	260	0	ENST00000284073.2:c.51_57del	p.Gln17HisfsTer10	p.Q17Hfs*10	ENST00000284073	NM_138962.2	17	caGCACGAC/ca																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796887	78796887	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	110	503	0	ENST00000306801.3:c.1000C>T	p.Gln334Ter	p.Q334*	ENST00000306801	NM_020761.2	334	Caa/Taa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561114	9561114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	111	451	0	ENST00000353224.5:c.668C>G	p.Ser223Trp	p.S223W	ENST00000353224	NM_177990.2	223	tCg/tGg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170016897	170016897	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs145084763		P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	145	489	1	ENST00000295797.4:c.1702G>A	p.Asp568Asn	p.D568N	ENST00000295797	NM_002740.5	568	Gat/Aat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132841	152132841	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	190	386	0	ENST00000262189.6:c.31C>T	p.Gln11Ter	p.Q11*	ENST00000262189	NM_170606.2	11	Cag/Tag																																																																														
LYN	4067	MSKCC	GRCh37	8	56866415	56866415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	120	470	0	ENST00000519728.1:c.662G>A	p.Arg221Lys	p.R221K	ENST00000519728	NM_002350.3	221	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	540	731	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0033512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	260	435	0	ENST00000371953.3:c.635-1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212573	36212573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	435	910	0	ENST00000222270.7:c.2324C>A	p.Ala775Asp	p.A775D	ENST00000222270	NM_014727.1	775	gCc/gAc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52439188	52439188	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	376	774	0	ENST00000460680.1:c.1054C>G	p.Pro352Ala	p.P352A	ENST00000460680	NM_004656.3	352	Ccc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0033548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	299	599	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PMS2	5395	MSKCC	GRCh37	7	6048636	6048636	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	76	432	0	ENST00000265849.7:c.15G>C	p.Glu5Asp	p.E5D	ENST00000265849	NM_000535.5	5	gaG/gaC																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589168	67589168	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	65	301	0	ENST00000274335.5:c.1156C>G	p.Arg386Gly	p.R386G	ENST00000274335		386	Cga/Gga																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39550291	39550300	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CATGTTTCGC	CATGTTTCGC	-			P-0033548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	38	225	0	ENST00000262039.4:c.404_413del	p.Met135LysfsTer6	p.M135Kfs*6	ENST00000262039	NM_002647.2	134	ggCATGTTTCGC/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0033552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	10	14	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864522	57864522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	569	599	0	ENST00000228682.2:c.1999C>A	p.Pro667Thr	p.P667T	ENST00000228682	NM_005269.2	667	Ccc/Acc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15308378	15308378	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	165	597	0	ENST00000263388.2:c.130C>G	p.Leu44Val	p.L44V	ENST00000263388	NM_000435.2	44	Ctg/Gtg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859420	151859420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148366561		P-0033552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	59	457	0	ENST00000262189.6:c.11242G>A	p.Ala3748Thr	p.A3748T	ENST00000262189	NM_170606.2	3748	Gct/Act																																																																														
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0033584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	258	850	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
NSD1	64324	MSKCC	GRCh37	5	176721462	176721462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	125	503	0	ENST00000439151.2:c.7093A>G	p.Ile2365Val	p.I2365V	ENST00000439151	NM_022455.4	2365	Ata/Gta																																																																														
MET	4233	MSKCC	GRCh37	7	116412031	116412038	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTTTCC	ACTTTTCC	-			P-0033584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	238	856	0	ENST00000397752.3:c.3017_3024del	p.Thr1006ArgfsTer6	p.T1006Rfs*6	ENST00000397752	NM_000245.2	1006	ACTTTTCCa/a																																																																														
MED12	9968	MSKCC	GRCh37	X	70352389	70352389	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	95	424	0	ENST00000374080.3:c.4415+1G>T		p.X1472_splice	ENST00000374080		1472																																																																															
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	665	620	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625456	69625456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	151	671	1	ENST00000334134.2:c.337G>A	p.Ala113Thr	p.A113T	ENST00000334134	NM_005247.2	113	Gcc/Acc																																																																														
ERG	2078	MSKCC	GRCh37	21	39755663	39755663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	185	699	1	ENST00000288319.7:c.1102G>A	p.Ala368Thr	p.A368T	ENST00000288319	NM_182918.3	368	Gcc/Acc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69032434	69032434	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	32	561	0	ENST00000288368.4:c.3508G>C	p.Asp1170His	p.D1170H	ENST00000288368	NM_024870.2	1170	Gat/Cat																																																																														
SMO	6608	MSKCC	GRCh37	7	128845572	128845572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	169	601	2	ENST00000249373.3:c.869G>A	p.Arg290His	p.R290H	ENST00000249373	NM_005631.4	290	cGc/cAc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259432	11259432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	118	539	1	ENST00000361445.4:c.4136G>T	p.Gly1379Val	p.G1379V	ENST00000361445	NM_004958.3	1379	gGc/gTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42795198	42795198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	121	889	0	ENST00000575354.2:c.2278G>T	p.Val760Phe	p.V760F	ENST00000575354	NM_015125.3	760	Gtc/Ttc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37089136	37089136	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	120	552	0	ENST00000231790.2:c.1858G>C	p.Glu620Gln	p.E620Q	ENST00000231790	NM_000249.3	620	Gag/Cag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164781	47164781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	102	418	0	ENST00000409792.3:c.1345C>A	p.Pro449Thr	p.P449T	ENST00000409792	NM_014159.6	449	Cca/Aca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38952384	38952384	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	68	349	0	ENST00000357387.3:c.3041A>T	p.Glu1014Val	p.E1014V	ENST00000357387	NM_152756.3	1014	gAa/gTa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057713	180057713	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	177	843	0	ENST00000261937.6:c.242T>A	p.Val81Glu	p.V81E	ENST00000261937	NM_182925.4	81	gTg/gAg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005699	150005699	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	265	383	0	ENST00000253339.5:c.526C>T	p.Gln176Ter	p.Q176*	ENST00000253339		176	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	519	685	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450367	50450367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	123	373	1	ENST00000331340.3:c.551G>A	p.Arg184Gln	p.R184Q	ENST00000331340	NM_006060.4	184	cGg/cAg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056199	26056210	+	inframe_deletion	In_Frame_Del	DEL	TTCTTAGCGCTC	TTCTTAGCGCTC	-			P-0033660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	282	439	0	ENST00000343677.2:c.447_458del	p.Ser150_Lys153del	p.S150_K153del	ENST00000343677	NM_005319.3	149	aaGAGCGCTAAGAAa/aaa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65332734	65332734	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	140	366	0	ENST00000342505.4:c.805A>T	p.Lys269Ter	p.K269*	ENST00000342505	NM_002227.2	269	Aaa/Taa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	431694	431694	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	40	508	0	ENST00000399788.2:c.2315A>T	p.Asp772Val	p.D772V	ENST00000399788	NM_001042603.1	772	gAt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	11	533	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16247477	16247477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0033667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	24	158	0	ENST00000375759.3:c.1748A>G	p.Lys583Arg	p.K583R	ENST00000375759	NM_015001.2	583	aAg/aGg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778083	3778084	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0033667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	80	747	0	ENST00000262367.5:c.6964_6965del	p.Ser2322ArgfsTer18	p.S2322Rfs*18	ENST00000262367	NM_004380.2	2322	TCa/a																																																																														
MAX	4149	MSKCC	GRCh37	14	65560500	65560500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	237	437	0	ENST00000358664.4:c.97C>T	p.Arg33Ter	p.R33*	ENST00000358664	NM_002382.4	33	Cga/Tga																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	122	234	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	377	357	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	92	378	1	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488657	212488657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	193	317	0	ENST00000342788.4:c.2192C>T	p.Thr731Met	p.T731M	ENST00000342788	NM_005235.2	731	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	320	599	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	67	204	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15374334	15374334	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201883209		P-0033742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	35	486	0	ENST00000263377.2:c.1238G>A	p.Arg413His	p.R413H	ENST00000263377	NM_058243.2	413	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717644	89717645	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0033742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	165	418	0	ENST00000371953.3:c.674_675dup	p.Ser226IlefsTer31	p.S226Ifs*31	ENST00000371953	NM_000314.4	223	-/AT																																																																														
RB1	5925	MSKCC	GRCh37	13	48881415	48881415	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0033742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	103	167	0	ENST00000267163.4:c.138-1G>A		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	819	368	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			687	131	309	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0033764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	511	650	1	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396464	396464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			799	273	742	0	ENST00000262320.3:c.562G>A	p.Glu188Lys	p.E188K	ENST00000262320	NM_003502.3	188	Gaa/Aaa																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056244	26056244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1340	154	415	0	ENST00000343677.2:c.413C>T	p.Pro138Leu	p.P138L	ENST00000343677	NM_005319.3	138	cCc/cTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2987305	2987305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033764-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	160	459	1	ENST00000396946.4:c.124C>T	p.Leu42Phe	p.L42F	ENST00000396946	NM_032415.4	42	Ctc/Ttc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115261278	115261278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	354	558	0	ENST00000438362.2:c.2443C>T	p.Arg815Cys	p.R815C	ENST00000438362	NM_001242891.1	815	Cgc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89724870	89725106	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTAAGAAGAGGGTCATTTAAAAGGCCTCTTAAAGATCATGTTTGTTACAGTGCTTAAAAATTAATATGTTCATCTGCAAAATGGAATAAAAAATCTGTTAAAAATATATTTCACTAAATAGTTTAAGATGAGTCATATTTGTGGGTTTTCATTTTAAATTTTCTTTCTCTAGGTGAAGCTGTACTTCACAAAAACAGTAGAGGAGCCGTCAAATCCAGAGGCTAGCAGTTCAACT	TCTTAAGAAGAGGGTCATTTAAAAGGCCTCTTAAAGATCATGTTTGTTACAGTGCTTAAAAATTAATATGTTCATCTGCAAAATGGAATAAAAAATCTGTTAAAAATATATTTCACTAAATAGTTTAAGATGAGTCATATTTGTGGGTTTTCATTTTAAATTTTCTTTCTCTAGGTGAAGCTGTACTTCACAAAAACAGTAGAGGAGCCGTCAAATCCAGAGGCTAGCAGTTCAACT	-			P-0033767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6	90	58	0	ENST00000371953.3:c.1027-171_1092del		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316349	14316350	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0033767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	331	572	0	ENST00000256196.4:c.255_256delinsCT	p.Gly86Cys	p.G86C	ENST00000256196		85	acTGgc/acCTgc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798103	32798105	+	frameshift_variant	Frame_Shift_Del	DEL	GTC	GTC	TT			P-0033767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	226	707	1	ENST00000374899.4:c.1574_1576delinsAA	p.Gly525GlufsTer36	p.G525Efs*36	ENST00000374899	NM_018833.2	525	gGACag/gAAag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681118	117681118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	202	453	0	ENST00000368508.3:c.3502G>T	p.Asp1168Tyr	p.D1168Y	ENST00000368508	NM_002944.2	1168	Gat/Tat																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	205	404	0	ENST00000346208.3:c.878T>G	p.Met293Arg	p.M293R	ENST00000346208		293	aTg/aGg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061508	38061508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	68	300	0	ENST00000250448.2:c.481A>G	p.Thr161Ala	p.T161A	ENST00000250448	NM_004496.3	161	Acg/Gcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	299	549	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412375	139412375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	175	542	0	ENST00000277541.6:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000277541	NM_017617.3	424	Gag/Aag																																																																														
PAX5	5079	MSKCC	GRCh37	9	36846865	36846865	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	97	400	0	ENST00000358127.4:c.1074G>A	p.Trp358Ter	p.W358*	ENST00000358127	NM_001280556.1	358	tgG/tgA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629589	187629589	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	149	613	0	ENST00000441802.2:c.1393C>T	p.Gln465Ter	p.Q465*	ENST00000441802	NM_005245.3	465	Cag/Tag																																																																														
MGA	23269	MSKCC	GRCh37	15	42042616	42042616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	240	373	0	ENST00000219905.7:c.6811C>T	p.Gln2271Ter	p.Q2271*	ENST00000219905	NM_001164273.1	2271	Cag/Tag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641487	18641487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	106	320	0	ENST00000266497.5:c.2486C>T	p.Ser829Phe	p.S829F	ENST00000266497		829	tCc/tTc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678406	88678406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	486	779	0	ENST00000360948.2:c.1130C>T	p.Thr377Ile	p.T377I	ENST00000360948	NM_001012338.2	377	aCc/aTc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28980009	28980009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	117	515	0	ENST00000282397.4:c.1459G>A	p.Glu487Lys	p.E487K	ENST00000282397	NM_002019.4	487	Gaa/Aaa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133538	55133538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	126	367	0	ENST00000257290.5:c.842C>T	p.Thr281Met	p.T281M	ENST00000257290	NM_006206.4	281	aCg/aTg																																																																														
CASP8	841	MSKCC	GRCh37	2	202131410	202131411	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	125	416	0	ENST00000358485.4:c.378_379delinsTT	p.Arg127Ter	p.R127*	ENST00000358485	NM_001080125.1	126	ttCCga/ttTTga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444849	49444849	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	187	652	0	ENST00000301067.7:c.2617C>T	p.Gln873Ter	p.Q873*	ENST00000301067	NM_003482.3	873	Caa/Taa																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839984	27839984	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	46	447	0	ENST00000328488.2:c.110A>T	p.Lys37Met	p.K37M	ENST00000328488	NM_003533.2	37	aAg/aTg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073454	8073455	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	121	478	1	ENST00000377482.5:c.1204_1205delinsGT	p.Pro402Val	p.P402V	ENST00000377482	NM_018948.3	402	CCa/GTa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258953	16258953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	146	471	0	ENST00000375759.3:c.6218C>T	p.Ser2073Phe	p.S2073F	ENST00000375759	NM_015001.2	2073	tCc/tTc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46726935	46726935	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	129	413	0	ENST00000371975.4:c.769G>A	p.Gly257Arg	p.G257R	ENST00000371975	NM_003579.3	257	Gga/Aga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120484246	120484246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	147	457	0	ENST00000256646.2:c.2884G>A	p.Gly962Arg	p.G962R	ENST00000256646	NM_024408.3	962	Ggg/Agg																																																																														
FGF3	2248	MSKCC	GRCh37	11	69631107	69631107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	142	499	0	ENST00000334134.2:c.305G>A	p.Arg102Lys	p.R102K	ENST00000334134	NM_005247.2	102	aGg/aAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424091	49424092	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	191	701	0	ENST00000301067.7:c.13970_13971delinsTC	p.Ser4657Phe	p.S4657F	ENST00000301067	NM_003482.3	4657	tCT/tTC																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562757	21562758	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	140	412	0	ENST00000382592.4:c.1161_1162delinsAA	p.Ala388Thr	p.A388T	ENST00000382592	NM_014572.2	387	gaGGcg/gaAAcg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3830870	3830870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	121	470	0	ENST00000262367.5:c.1686G>A	p.Met562Ile	p.M562I	ENST00000262367	NM_004380.2	562	atG/atA																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858232	9858232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	133	463	1	ENST00000330684.3:c.3169G>A	p.Ala1057Thr	p.A1057T	ENST00000330684	NM_001134407.1	1057	Gcc/Acc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89809309	89809310	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	128	489	1	ENST00000389301.3:c.3663_3664delinsAA	p.Asn1221_Pro1222delinsLysThr	p.N1221_P1222delinsKT	ENST00000389301	NM_000135.2	1221	aaCCcg/aaAAcg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244458	5244458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	212	770	0	ENST00000357368.4:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000357368	NM_002850.3	342	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170803	11170804	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	137	533	1	ENST00000344626.4:c.4851_4852delinsTT	p.Arg1618Ter	p.R1618*	ENST00000344626	NM_003072.3	1617	agCCga/agTTga																																																																														
BBC3	27113	MSKCC	GRCh37	19	47725044	47725044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	200	681	0	ENST00000449228.1:c.700C>T	p.Pro234Ser	p.P234S	ENST00000449228	NM_001127240.2	234	Ccg/Tcg																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082362	16082362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	235	715	0	ENST00000281043.3:c.176C>T	p.Pro59Leu	p.P59L	ENST00000281043	NM_005378.4	59	cCc/cTc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966142	25966142	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	146	586	0	ENST00000435504.4:c.3064A>G	p.Lys1022Glu	p.K1022E	ENST00000435504		1022	Aaa/Gaa																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62323149	62323150	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	97	400	0	ENST00000508582.2:c.2683_2684delinsTT	p.Pro895Leu	p.P895L	ENST00000508582		895	CCg/TTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41573121	41573122	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	122	678	1	ENST00000263253.7:c.5406_5407delinsAA	p.Val1803Met	p.V1803M	ENST00000263253	NM_001429.3	1802	ccGGtg/ccAAtg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49932929	49932930	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	113	734	0	ENST00000296474.3:c.3014_3015delinsTT	p.Ala1005Val	p.A1005V	ENST00000296474	NM_002447.2	1005	gCC/gTT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89521672	89521672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	156	412	0	ENST00000336596.2:c.2749G>A	p.Gly917Ser	p.G917S	ENST00000336596	NM_005233.5	917	Ggt/Agt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539093	187539093	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	150	567	0	ENST00000441802.2:c.8647T>C	p.Tyr2883His	p.Y2883H	ENST00000441802	NM_005245.3	2883	Tac/Cac																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31449510	31449510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	88	294	0	ENST00000344624.3:c.2699C>T	p.Pro900Leu	p.P900L	ENST00000344624		900	cCa/cTa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176718972	176718973	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	51	167	1	ENST00000439151.2:c.6276_6277delinsAA	p.Glu2093Lys	p.E2093K	ENST00000439151	NM_022455.4	2092	acGGaa/acAAaa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979317	93979317	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	157	396	0	ENST00000369303.4:c.1511A>T	p.Asn504Ile	p.N504I	ENST00000369303	NM_004440.3	504	aAt/aTt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117679033	117679033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	205	472	1	ENST00000368508.3:c.3788C>T	p.Pro1263Leu	p.P1263L	ENST00000368508	NM_002944.2	1263	cCc/cTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157469821	157469822	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	186	592	0	ENST00000346085.5:c.2615_2616delinsTT	p.Pro872Leu	p.P872L	ENST00000346085	NM_020732.3	872	cCC/cTT																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38146931	38146931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	212	695	0	ENST00000317025.8:c.3211C>T	p.Pro1071Ser	p.P1071S	ENST00000317025	NM_023034.1	1071	Cct/Tct																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741687	145741688	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	201	698	2	ENST00000428558.2:c.815_816delinsTT	p.Pro272Leu	p.P272L	ENST00000428558	NM_004260.3	272	cCC/cTT																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220311	98220311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	85	264	0	ENST00000331920.6:c.3152G>A	p.Trp1051Ter	p.W1051*	ENST00000331920	NM_000264.3	1051	tGg/tAg																																																																														
ABL1	25	MSKCC	GRCh37	9	133760962	133760963	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	159	635	2	ENST00000318560.5:c.3285_3286delinsAA	p.Glu1096Lys	p.E1096K	ENST00000318560	NM_005157.4	1095	cgGGag/cgAAag																																																																														
BTK	695	MSKCC	GRCh37	X	100626635	100626635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	118	182	0	ENST00000308731.7:c.295C>T	p.Pro99Ser	p.P99S	ENST00000308731	NM_000061.2	99	Cct/Tct																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170804	11170804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	137	533	0	ENST00000344626.4:c.4852C>T	p.Arg1618Ter	p.R1618*	ENST00000344626	NM_003072.3	1618	Cga/Tga																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	124	531	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
ATM	472	MSKCC	GRCh37	11	108115681	108115681	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	72	414	0	ENST00000278616.4:c.829G>T	p.Glu277Ter	p.E277*	ENST00000278616	NM_000051.3	277	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112170746	112170747	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	98	692	0	ENST00000257430.4:c.1847dup	p.Leu616PhefsTer18	p.L616Ffs*18	ENST00000257430	NM_000038.5	614	-/T																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	2585	411	2	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
HGF	3082	MSKCC	GRCh37	7	81372744	81372744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	34	324	1	ENST00000222390.5:c.790G>A	p.Asp264Asn	p.D264N	ENST00000222390	NM_000601.4	264	Gat/Aat																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18271969	18271969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	49	291	0	ENST00000222254.8:c.572C>T	p.Ser191Leu	p.S191L	ENST00000222254	NM_005027.3	191	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	157	675	2	ENST00000269305.4:c.833C>A	p.Pro278His	p.P278H	ENST00000269305	NM_001126112.2	278	cCt/cAt																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81957138	81957138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	131	426	0	ENST00000359376.3:c.2356G>A	p.Asp786Asn	p.D786N	ENST00000359376	NM_002661.3	786	Gat/Aat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445091	89445091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	50	321	0	ENST00000336596.2:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000336596	NM_005233.5	471	Gag/Aag																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67198897	67198897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	61	425	0	ENST00000312629.5:c.368T>C	p.Leu123Pro	p.L123P	ENST00000312629	NM_003952.2	123	cTa/cCa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569984	95569984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	66	517	0	ENST00000343455.3:c.3749C>A	p.Ser1250Tyr	p.S1250Y	ENST00000343455	NM_177438.2	1250	tCt/tAt																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223514	2223514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	87	608	1	ENST00000326181.6:c.1045G>A	p.Glu349Lys	p.E349K	ENST00000326181	NM_032271.2	349	Gag/Aag																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641289	3641289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	76	549	0	ENST00000294008.3:c.2350C>T	p.His784Tyr	p.H784Y	ENST00000294008	NM_032444.2	784	Cac/Tac																																																																														
BRD4	23476	MSKCC	GRCh37	19	15367906	15367906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	113	664	1	ENST00000263377.2:c.1420C>A	p.Pro474Thr	p.P474T	ENST00000263377	NM_058243.2	474	Ccc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224552	36224552	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1421	76	800	1	ENST00000222270.7:c.7014T>A	p.Asp2338Glu	p.D2338E	ENST00000222270	NM_014727.1	2338	gaT/gaA																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664901	138664901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	22	141	0	ENST00000330315.3:c.664G>A	p.Ala222Thr	p.A222T	ENST00000330315	NM_023067.3	222	Gca/Aca																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261832	16261832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	20	434	0	ENST00000375759.3:c.9098del	p.Pro3033HisfsTer58	p.P3033Hfs*58	ENST00000375759	NM_015001.2	3033	Cca/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	116	400	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220707	1220708	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0033855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	278	528	1	ENST00000326873.7:c.725_726delinsTT	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGG/gTT																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597494	10597494	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	368	478	0	ENST00000171111.5:c.1709G>T	p.Gly570Val	p.G570V	ENST00000171111	NM_203500.1	570	gGa/gTa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593488	55593488	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	94	365	0	ENST00000288135.5:c.1645C>A	p.Gln549Lys	p.Q549K	ENST00000288135	NM_000222.2	549	Cag/Aag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481806	56481806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	84	596	0	ENST00000267101.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000267101	NM_001982.3	245	gCc/gTc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35875645	35875645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201449880		P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	53	398	0	ENST00000303115.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000303115	NM_002185.3	278	Gat/Aat																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	85	580	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29657405	29657405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	77	644	0	ENST00000358273.4:c.5701C>T	p.Pro1901Ser	p.P1901S	ENST00000358273	NM_001042492.2	1901	Cct/Tct																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750440	41750440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	67	453	0	ENST00000226382.2:c.188G>A	p.Gly63Glu	p.G63E	ENST00000226382	NM_003924.3	63	gGa/gAa																																																																														
PGR	5241	MSKCC	GRCh37	11	100912815	100912815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	53	455	0	ENST00000325455.5:c.2507G>A	p.Arg836Gln	p.R836Q	ENST00000325455	NM_001202474.3	836	cGa/cAa																																																																														
HGF	3082	MSKCC	GRCh37	7	81358940	81358940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	68	531	0	ENST00000222390.5:c.1021C>T	p.Pro341Ser	p.P341S	ENST00000222390	NM_000601.4	341	Cct/Tct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212566827	212566827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	173	325	0	ENST00000342788.4:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000342788	NM_005235.2	452	Gaa/Aaa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	85	592	1	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879903	37879903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	82	685	0	ENST00000269571.5:c.2198C>T	p.Thr733Ile	p.T733I	ENST00000269571		733	aCa/aTa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112924309	112924309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	75	588	2	ENST00000351677.2:c.1255C>T	p.His419Tyr	p.H419Y	ENST00000351677	NM_002834.3	419	Cac/Tac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212576880	212576880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	54	389	0	ENST00000342788.4:c.1019G>A	p.Gly340Glu	p.G340E	ENST00000342788	NM_005235.2	340	gGa/gAa																																																																														
MPL	4352	MSKCC	GRCh37	1	43805735	43805735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	87	672	0	ENST00000372470.3:c.791C>T	p.Ser264Phe	p.S264F	ENST00000372470	NM_005373.2	264	tCc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68999972	68999972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	66	602	0	ENST00000288368.4:c.2041C>T	p.Pro681Ser	p.P681S	ENST00000288368	NM_024870.2	681	Cca/Tca																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152082	11152082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	40	497	1	ENST00000344626.4:c.4270C>T	p.Pro1424Ser	p.P1424S	ENST00000344626	NM_003072.3	1424	Ccg/Tcg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624897	9624897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	89	540	0	ENST00000353224.5:c.80C>T	p.Pro27Leu	p.P27L	ENST00000353224	NM_177990.2	27	cCa/cTa																																																																														
ATM	472	MSKCC	GRCh37	11	108192078	108192078	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200431631		P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	108	616	0	ENST00000278616.4:c.6503C>T	p.Ser2168Leu	p.S2168L	ENST00000278616	NM_000051.3	2168	tCg/tTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351703	89351703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	148	766	0	ENST00000301030.4:c.1247C>T	p.Ala416Val	p.A416V	ENST00000301030	NM_001256183.1	416	gCg/gTg																																																																														
TP63	8626	MSKCC	GRCh37	3	189582204	189582204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	45	396	0	ENST00000264731.3:c.763G>A	p.Glu255Lys	p.E255K	ENST00000264731	NM_003722.4	255	Gag/Aag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11276260	11276260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	62	474	0	ENST00000361445.4:c.3062C>T	p.Ser1021Phe	p.S1021F	ENST00000361445	NM_004958.3	1021	tCc/tTc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206649578	206649578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	83	578	0	ENST00000367120.3:c.413C>T	p.Pro138Leu	p.P138L	ENST00000367120	NM_014002.3	138	cCg/cTg																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246670428	246670428	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	116	528	0	ENST00000388985.4:c.92T>A	p.Phe31Tyr	p.F31Y	ENST00000388985		31	tTc/tAc																																																																														
RET	5979	MSKCC	GRCh37	10	43612035	43612035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	91	815	0	ENST00000355710.3:c.2140G>C	p.Asp714His	p.D714H	ENST00000355710	NM_020975.4	714	Gat/Cat																																																																														
EED	8726	MSKCC	GRCh37	11	85961417	85961417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	43	275	0	ENST00000263360.6:c.194G>A	p.Arg65Lys	p.R65K	ENST00000263360	NM_003797.3	65	aGg/aAg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118359417	118359417	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	62	432	1	ENST00000534358.1:c.4421G>A	p.Trp1474Ter	p.W1474*	ENST00000534358	NM_005933.3	1474	tGg/tAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445206	49445206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	76	755	0	ENST00000301067.7:c.2260C>T	p.Pro754Ser	p.P754S	ENST00000301067	NM_003482.3	754	Ccc/Tcc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913065	32913065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	75	477	0	ENST00000380152.3:c.4573C>T	p.His1525Tyr	p.H1525Y	ENST00000380152		1525	Cat/Tat																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134879	41134880	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	56	473	2	ENST00000379561.5:c.748_749delinsTT	p.Pro250Phe	p.P250F	ENST00000379561	NM_002015.3	250	CCt/TTt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987004	36987004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	88	503	0	ENST00000354822.5:c.685C>T	p.His229Tyr	p.H229Y	ENST00000354822	NM_001079668.2	229	Cac/Tac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862774	9862774	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	72	517	0	ENST00000330684.3:c.2529G>A	p.Trp843Ter	p.W843*	ENST00000330684	NM_001134407.1	843	tgG/tgA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16068441	16068441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	33	105	0	ENST00000268712.3:c.470C>T	p.Ser157Phe	p.S157F	ENST00000268712	NM_006311.3	157	tCc/tTc																																																																														
NF1	4763	MSKCC	GRCh37	17	29670123	29670123	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	80	517	0	ENST00000358273.4:c.7160del	p.Asn2387ThrfsTer9	p.N2387Tfs*9	ENST00000358273	NM_001042492.2	2387	Aac/ac																																																																														
CIC	23152	MSKCC	GRCh37	19	42791019	42791019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	64	509	0	ENST00000575354.2:c.164C>T	p.Pro55Leu	p.P55L	ENST00000575354	NM_015125.3	55	cCg/cTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095663	178095663	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	150	585	0	ENST00000397062.3:c.1668A>T	p.Gln556His	p.Q556H	ENST00000397062	NM_006164.4	556	caA/caT																																																																														
INHA	3623	MSKCC	GRCh37	2	220439975	220439975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	173	884	1	ENST00000243786.2:c.828G>A	p.Trp276Ter	p.W276*	ENST00000243786	NM_002191.3	276	tgG/tgA																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375087	31375087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	88	632	0	ENST00000328111.2:c.484C>T	p.Pro162Ser	p.P162S	ENST00000328111	NM_006892.3	162	Ccc/Tcc																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71090674	71090674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	43	312	0	ENST00000318789.4:c.674C>T	p.Pro225Leu	p.P225L	ENST00000318789	NM_032682.5	225	cCa/cTa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169985720	169985720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	84	499	0	ENST00000295797.4:c.382G>A	p.Gly128Ser	p.G128S	ENST00000295797	NM_002740.5	128	Ggt/Agt																																																																														
TP63	8626	MSKCC	GRCh37	3	189456526	189456526	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	53	482	0	ENST00000264731.3:c.287T>G	p.Ile96Ser	p.I96S	ENST00000264731	NM_003722.4	96	aTc/aGc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1978387	1978388	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	48	636	1	ENST00000382891.5:c.3807_3808delinsTT	p.Leu1270Phe	p.L1270F	ENST00000382891	NM_133335.3	1269	ggCCtt/ggTTtt																																																																														
KDR	3791	MSKCC	GRCh37	4	55960987	55960987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	63	463	0	ENST00000263923.4:c.2953G>A	p.Asp985Asn	p.D985N	ENST00000263923	NM_002253.2	985	Gat/Aat																																																																														
RAD50	10111	MSKCC	GRCh37	5	131923661	131923661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	50	301	0	ENST00000265335.6:c.931C>T	p.His311Tyr	p.H311Y	ENST00000265335		311	Cac/Tac																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459687	149459687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	71	750	0	ENST00000286301.3:c.520G>A	p.Asp174Asn	p.D174N	ENST00000286301	NM_005211.3	174	Gac/Aac																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149499656	149499656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	80	478	0	ENST00000261799.4:c.2617G>A	p.Glu873Lys	p.E873K	ENST00000261799	NM_002609.3	873	Gag/Aag																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523660	176523660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	91	741	0	ENST00000292408.4:c.2071C>T	p.Pro691Ser	p.P691S	ENST00000292408	NM_213647.1	691	Cct/Tct																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681786	30681786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	74	585	0	ENST00000376406.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000376406	NM_014641.2	104	cCt/cTt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6042188	6042188	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	69	624	0	ENST00000265849.7:c.433C>T	p.Gln145Ter	p.Q145*	ENST00000265849	NM_000535.5	145	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55266472	55266472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	66	599	0	ENST00000275493.2:c.2764G>A	p.Glu922Lys	p.E922K	ENST00000275493	NM_005228.3	922	Gag/Aag																																																																														
SMO	6608	MSKCC	GRCh37	7	128851969	128851969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	57	691	0	ENST00000249373.3:c.2041G>A	p.Glu681Lys	p.E681K	ENST00000249373	NM_005631.4	681	Gag/Aag																																																																														
EZH2	2146	MSKCC	GRCh37	7	148523566	148523566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	41	287	0	ENST00000320356.2:c.887T>C	p.Leu296Pro	p.L296P	ENST00000320356	NM_004456.4	296	cTa/cCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500842	8500842	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	63	583	0	ENST00000356435.5:c.2040G>A	p.Trp680Ter	p.W680*	ENST00000356435		680	tgG/tgA																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8500871	8500871	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	54	610	0	ENST00000356435.5:c.2011A>T	p.Lys671Ter	p.K671*	ENST00000356435		671	Aaa/Taa																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128305427	128305427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	91	647	0	ENST00000265960.3:c.869C>T	p.Ser290Phe	p.S290F	ENST00000265960	NM_001006617.1	290	tCc/tTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938968	76938968	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	101	682	1	ENST00000373344.5:c.1780T>A	p.Ser594Thr	p.S594T	ENST00000373344	NM_000489.3	594	Tcc/Acc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538296	9538298	+	missense_variant	Missense_Mutation	ONP	CCC	CCC	TCT			P-0033935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	86	545	0	ENST00000353224.5:c.1700_1702delinsAGA	p.Arg567_Asp568delinsLysAsn	p.R567_D568delinsKN	ENST00000353224	NM_177990.2	567	aGGGac/aAGAac																																																																														
MGA	23269	MSKCC	GRCh37	15	42046761	42046761	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	80	518	0	ENST00000219905.7:c.7135C>T	p.Gln2379Ter	p.Q2379*	ENST00000219905	NM_001164273.1	2379	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7576908	7576908	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	57	620	0	ENST00000269305.4:c.938del	p.Ser313ThrfsTer32	p.S313Tfs*32	ENST00000269305	NM_001126112.2	313	aGc/ac																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737116	145737116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034080-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			767	73	595	0	ENST00000428558.2:c.3450G>C	p.Arg1150Ser	p.R1150S	ENST00000428558	NM_004260.3	1150	agG/agC																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696637	47696637	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	46	655	0	ENST00000347630.2:c.311T>G	p.Phe104Cys	p.F104C	ENST00000347630	NM_001007230.1	104	tTc/tGc																																																																														
MGA	23269	MSKCC	GRCh37	15	42019411	42019411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	23	704	2	ENST00000219905.7:c.3464G>T	p.Arg1155Leu	p.R1155L	ENST00000219905	NM_001164273.1	1155	cGa/cTa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061018	38061033	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCGCCCTCTAGCT	GGCGCGCCCTCTAGCT	-			P-0034085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	29	157	0	ENST00000250448.2:c.956_971del	p.Gln319ArgfsTer26	p.Q319Rfs*26	ENST00000250448	NM_004496.3	319	cAGCTAGAGGGCGCGCCg/cg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	144	936	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118392803	118392803	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	63	628	0	ENST00000534358.1:c.11835del	p.Tyr3945Ter	p.Y3945*	ENST00000534358	NM_005933.3	3945	taC/ta																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0034094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	483	673	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004281	29004281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	292	372	0	ENST00000282397.4:c.1012C>T	p.His338Tyr	p.H338Y	ENST00000282397	NM_002019.4	338	Cat/Tat																																																																														
ATRX	546	MSKCC	GRCh37	X	76814209	76814209	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	184	226	0	ENST00000373344.5:c.6435C>G	p.Ile2145Met	p.I2145M	ENST00000373344	NM_000489.3	2145	atC/atG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	48	675	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	32	868	1	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	61	393	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	139	413	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175749	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTAT	TACTTTAT	-			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	71	305	0	ENST00000257430.4:c.4461_4468delTTTATTAC	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1486	gaTACTTTATta/gata																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88476286	88476286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	30	482	0	ENST00000360948.2:c.1846G>A	p.Val616Ile	p.V616I	ENST00000360948	NM_001012338.2	616	Gtc/Atc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	30	187	0	ENST00000281708.4:c.1436G>T	p.Arg479Leu	p.R479L	ENST00000281708	NM_033632.3	479	cGa/cTa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	26	443	0	ENST00000342988.3:c.1081del	p.Arg361AlafsTer23	p.R361Afs*23	ENST00000342988	NM_005359.5	361	Cgc/gc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212397	5212397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	41	609	0	ENST00000357368.4:c.4720G>T	p.Val1574Phe	p.V1574F	ENST00000357368	NM_002850.3	1574	Gtc/Ttc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223060	5223060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	55	447	0	ENST00000357368.4:c.2743G>A	p.Glu915Lys	p.E915K	ENST00000357368	NM_002850.3	915	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112155004	112155010	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTCAT	AGCTCAT	-			P-0034138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	59	442	0	ENST00000257430.4:c.1275_1281del	p.Ala426AsnfsTer26	p.A426Nfs*26	ENST00000257430	NM_000038.5	425	gaAGCTCAT/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380254	25380254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	392	726	1	ENST00000256078.4:c.204G>T	p.Arg68Ser	p.R68S	ENST00000256078	NM_033360.2	68	agG/agT																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	162	562	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	326	1018	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																														
NF1	4763	MSKCC	GRCh37	17	29662034	29662034	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	128	513	0	ENST00000358273.4:c.5991G>A	p.Trp1997Ter	p.W1997*	ENST00000358273	NM_001042492.2	1997	tgG/tgA																																																																														
INSR	3643	MSKCC	GRCh37	19	7122771	7122771	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202160383		P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	79	657	0	ENST00000302850.5:c.3383G>A	p.Arg1128His	p.R1128H	ENST00000302850	NM_000208.2	1128	cGc/cAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37864713	37864713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	94	714	0	ENST00000269571.5:c.365C>T	p.Pro122Leu	p.P122L	ENST00000269571		122	cCg/cTg																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729316	41729316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	273	662	0	ENST00000242208.4:c.1213G>A	p.Asp405Asn	p.D405N	ENST00000242208	NM_002192.2	405	Gat/Aat																																																																														
ATRX	546	MSKCC	GRCh37	X	76763927	76763927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	107	767	0	ENST00000373344.5:c.7381C>A	p.Gln2461Lys	p.Q2461K	ENST00000373344	NM_000489.3	2461	Cag/Aag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18800882	18800882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	77	632	1	ENST00000266497.5:c.4258G>T	p.Val1420Leu	p.V1420L	ENST00000266497		1420	Gtg/Ttg																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281840	49281840	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	116	861	0	ENST00000282018.3:c.887C>A	p.Ala296Asp	p.A296D	ENST00000282018	NM_020377.2	296	gCc/gAc																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66519958	66519958	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	320	577	0	ENST00000358598.2:c.440+1G>A		p.X147_splice	ENST00000358598	NM_212471.2	147																																																																															
INHBA	3624	MSKCC	GRCh37	7	41729271	41729271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	94	579	0	ENST00000242208.4:c.1258G>T	p.Val420Leu	p.V420L	ENST00000242208	NM_002192.2	420	Gtg/Ttg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652216	48652216	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	74	593	0	ENST00000376670.3:c.887C>G	p.Thr296Ser	p.T296S	ENST00000376670	NM_002049.3	296	aCc/aGc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652428	48652428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	305	906	0	ENST00000376670.3:c.1099C>G	p.Leu367Val	p.L367V	ENST00000376670	NM_002049.3	367	Ctg/Gtg																																																																														
BTK	695	MSKCC	GRCh37	X	100611131	100611131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	122	774	0	ENST00000308731.7:c.1475G>T	p.Arg492Leu	p.R492L	ENST00000308731	NM_000061.2	492	cGc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	161	670	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	104	879	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133202741	133202741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	139	559	0	ENST00000320574.5:c.6493C>T	p.Arg2165Cys	p.R2165C	ENST00000320574	NM_006231.2	2165	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0034227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	12	395	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	280	798	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	21	560	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181482	32181482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	86	679	0	ENST00000375023.3:c.2303C>T	p.Thr768Ile	p.T768I	ENST00000375023	NM_004557.3	768	aCt/aTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440117	49440117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	114	683	0	ENST00000301067.7:c.4509C>A	p.Ser1503Arg	p.S1503R	ENST00000301067	NM_003482.3	1503	agC/agA																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198257824	198257824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	82	441	0	ENST00000335508.6:c.3628C>T	p.His1210Tyr	p.H1210Y	ENST00000335508	NM_012433.2	1210	Cac/Tac																																																																														
MLH1	4292	MSKCC	GRCh37	3	37067168	37067168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	67	427	0	ENST00000231790.2:c.1079T>C	p.Val360Ala	p.V360A	ENST00000231790	NM_000249.3	360	gTt/gCt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	84	383	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	97	346	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	208	706	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73108193	73108193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	10	77	1	ENST00000356692.5:c.293C>T	p.Pro98Leu	p.P98L	ENST00000356692		98	cCt/cTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	223	788	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	102	831	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55138642	55138642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143344944		P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	92	675	1	ENST00000257290.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000257290	NM_006206.4	440	aCg/aTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	149	820	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821601	72821618	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCCGCCGCCA	CCGCCGCCGCCGCCGCCA	-			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	16	96	0	ENST00000268489.5:c.10557_10574delTGGCGGCGGCGGCGGCGG	p.Gly3522_Gly3527del	p.G3522_G3527del	ENST00000268489	NM_006885.3	3519	ggTGGCGGCGGCGGCGGCGGc/ggc																																																																														
CIC	23152	MSKCC	GRCh37	19	42793521	42793521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	195	934	1	ENST00000575354.2:c.1323G>A	p.Met441Ile	p.M441I	ENST00000575354	NM_015125.3	441	atG/atA																																																																														
CIC	23152	MSKCC	GRCh37	19	42792029	42792029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	126	742	0	ENST00000575354.2:c.833G>T	p.Ser278Ile	p.S278I	ENST00000575354	NM_015125.3	278	aGc/aTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42793120	42793120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	193	890	4	ENST00000575354.2:c.1012G>A	p.Ala338Thr	p.A338T	ENST00000575354	NM_015125.3	338	Gca/Aca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266057	41266360	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGC	AAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGC	-			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	24	367	0	ENST00000349496.5:c.56_242-83del		p.X19_splice	ENST00000349496	NM_001904.3	19																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139814891	139814891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	144	792	0	ENST00000247668.2:c.884G>A	p.Arg295Lys	p.R295K	ENST00000247668	NM_021138.3	295	aGg/aAg																																																																														
FAM58A	92002	MSKCC	GRCh37	X	152858176	152858176	+	synonymous_variant	Silent	SNP	G	G	A			P-0034255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	150	546	0	ENST00000406277.2:c.439C>T	p.Leu147=	p.L147=	ENST00000406277	NM_152274.4	147	Ctg/Ttg																																																																														
KIT	3815	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0034265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	273	588	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273039	115273040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	190	510	0	ENST00000438362.2:c.1333dup	p.Met445AsnfsTer11	p.M445Nfs*11	ENST00000438362	NM_001242891.1	445	atg/aAtg																																																																														
MGA	23269	MSKCC	GRCh37	15	42041794	42041794	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	137	431	0	ENST00000219905.7:c.5989G>T	p.Glu1997Ter	p.E1997*	ENST00000219905	NM_001164273.1	1997	Gaa/Taa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350723	89350723	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	375	812	0	ENST00000301030.4:c.2227G>T	p.Glu743Ter	p.E743*	ENST00000301030	NM_001256183.1	743	Gaa/Taa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247788	10247788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	302	757	0	ENST00000340748.4:c.4414C>A	p.Leu1472Ile	p.L1472I	ENST00000340748		1472	Ctc/Atc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044573	128044573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	212	395	0	ENST00000285398.2:c.1048G>A	p.Gly350Ser	p.G350S	ENST00000285398	NM_000122.1	350	Ggt/Agt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	264	554	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39305242	39305242	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	270	537	0	ENST00000373001.3:c.1183C>G	p.Pro395Ala	p.P395A	ENST00000373001	NM_022157.3	395	Cca/Gca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692815	89692815	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	40	309	0	ENST00000371953.3:c.299T>G	p.Leu100Arg	p.L100R	ENST00000371953	NM_000314.4	100	cTt/cGt																																																																														
MGA	23269	MSKCC	GRCh37	15	42041753	42041753	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	22	388	0	ENST00000219905.7:c.5948C>A	p.Ser1983Ter	p.S1983*	ENST00000219905	NM_001164273.1	1983	tCa/tAa																																																																														
MGA	23269	MSKCC	GRCh37	15	42057151	42057179	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCACCCTAAAAGGTCCCCTATTCTCAG	GCTCACCCTAAAAGGTCCCCTATTCTCAG	-			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	54	652	0	ENST00000219905.7:c.7813_7841del	p.Leu2605ThrfsTer8	p.L2605Tfs*8	ENST00000219905	NM_001164273.1	2604	ttGCTCACCCTAAAAGGTCCCCTATTCTCAGga/ttga																																																																														
TSC1	7248	MSKCC	GRCh37	9	135800974	135800975	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TTGAGACA			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	100	309	0	ENST00000298552.3:c.355_362dup	p.Lys121AsnfsTer19	p.K121Nfs*19	ENST00000298552	NM_001162426.1	121	aag/aaTGTCTCAAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76891480	76891480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	355	375	0	ENST00000373344.5:c.4625A>G	p.Asp1542Gly	p.D1542G	ENST00000373344	NM_000489.3	1542	gAt/gGt																																																																														
MGA	23269	MSKCC	GRCh37	15	42059454	42059465	+	frameshift_variant	Frame_Shift_Del	DEL	CTCACCAAGTTC	CTCACCAAGTTC	G			P-0034289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	65	347	0	ENST00000219905.7:c.9174_9185delinsG	p.Ser3059CysfsTer19	p.S3059Cfs*19	ENST00000219905	NM_001164273.1	3058	gcCTCACCAAGTTCt/gcGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	101	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	205	685	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	10	198	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
ALK	238	MSKCC	GRCh37	2	30143164	30143164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	140	677	0	ENST00000389048.3:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000389048	NM_004304.4	121	cGg/cAg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146788	185146788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	177	576	1	ENST00000265026.3:c.419C>T	p.Pro140Leu	p.P140L	ENST00000265026	NM_004721.4	140	cCt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112151285	112151286	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	76	299	0	ENST00000257430.4:c.930dup	p.Lys311GlnfsTer16	p.K311Qfs*16	ENST00000257430	NM_000038.5	310	acc/aCcc																																																																														
APC	324	MSKCC	GRCh37	5	112173535	112173547	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGCCATCTCTT	CTTGCCATCTCTT	-			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	22	318	0	ENST00000257430.4:c.2245_2257del	p.Leu749MetfsTer8	p.L749Mfs*8	ENST00000257430	NM_000038.5	748	agCTTGCCATCTCTT/ag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709479	176709479	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	47	333	0	ENST00000439151.2:c.5906A>G	p.Asn1969Ser	p.N1969S	ENST00000439151	NM_022455.4	1969	aAt/aGt																																																																														
PIM1	5292	MSKCC	GRCh37	6	37140810	37140810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	149	477	0	ENST00000373509.5:c.646C>T	p.His216Tyr	p.H216Y	ENST00000373509	NM_002648.3	216	Cat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	269	710	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983930	2983930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	154	994	0	ENST00000396946.4:c.600C>A	p.Asp200Glu	p.D200E	ENST00000396946	NM_032415.4	200	gaC/gaA																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177562	56177562	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	51	430	0	ENST00000399503.3:c.2536del	p.Ser846ProfsTer11	p.S846Pfs*11	ENST00000399503	NM_005921.1	845	agT/ag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	281	380	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
STK11	6794	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	572	545	0	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
TBX3	6926	MSKCC	GRCh37	12	115114192	115114192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	247	808	0	ENST00000257566.3:c.1025A>G	p.Glu342Gly	p.E342G	ENST00000257566	NM_016569.3	342	gAa/gGa																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023096	33023097	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	117	394	1	ENST00000300177.4:c.205_206delinsAA	p.Pro69Asn	p.P69N	ENST00000300177	NM_001191322.1	69	CCc/AAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577017	7577017	+	splice_donor_variant	Splice_Site	DEL	A	A	-			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	592	744	2	ENST00000269305.4:c.919+2del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212251788	212251788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	125	359	0	ENST00000342788.4:c.3271G>T	p.Ala1091Ser	p.A1091S	ENST00000342788	NM_005235.2	1091	Gct/Tct																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445055	89445055	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	137	471	0	ENST00000336596.2:c.1375G>T	p.Glu459Ter	p.E459*	ENST00000336596	NM_005233.5	459	Gaa/Taa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87285801	87285801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	221	712	0	ENST00000277120.3:c.138C>A	p.Ser46Arg	p.S46R	ENST00000277120		46	agC/agA																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410538	63410538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	268	394	1	ENST00000330258.3:c.2629G>A	p.Gly877Ser	p.G877S	ENST00000330258	NM_152424.3	877	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	147	653	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048662	180048662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	64	549	0	ENST00000261937.6:c.1900G>A	p.Ala634Thr	p.A634T	ENST00000261937	NM_182925.4	634	Gcc/Acc																																																																														
ATR	545	MSKCC	GRCh37	3	142268379	142268380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	37	362	0	ENST00000350721.4:c.3112dup	p.Ser1038PhefsTer11	p.S1038Ffs*11	ENST00000350721	NM_001184.3	1038	tct/tTct																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	52	413	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	52	413	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624263	89624263	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	29	299	0	ENST00000371953.3:c.37A>T	p.Lys13Ter	p.K13*	ENST00000371953	NM_000314.4	13	Aaa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	52	413	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135776220	135776220	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	37	333	0	ENST00000298552.3:c.2507C>G	p.Ser836Ter	p.S836*	ENST00000298552	NM_001162426.1	836	tCa/tGa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967087	25967087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	56	507	0	ENST00000435504.4:c.2119G>T	p.Gly707Trp	p.G707W	ENST00000435504		707	Ggg/Tgg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50813907	50813907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	47	456	0	ENST00000398568.2:c.1461G>T	p.Trp487Cys	p.W487C	ENST00000398568	NM_001042412.1	487	tgG/tgT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8492907	8492907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	83	534	2	ENST00000356435.5:c.2422G>A	p.Asp808Asn	p.D808N	ENST00000356435		808	Gat/Aat																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390980	139390980	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	71	706	0	ENST00000277541.6:c.7211A>T	p.Gln2404Leu	p.Q2404L	ENST00000277541	NM_017617.3	2404	cAg/cTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106197245	106197245	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	55	326	0	ENST00000380013.4:c.5582del	p.Gly1861GlufsTer26	p.G1861Efs*26	ENST00000380013	NM_001127208.2	1860	Ggg/gg																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30253850	30253850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	50	456	0	ENST00000307677.4:c.604G>A	p.Glu202Lys	p.E202K	ENST00000307677	NM_138578.1	202	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	53	399	0	ENST00000371953.3:c.494G>T	p.Gly165Val	p.G165V	ENST00000371953	NM_000314.4	165	gGa/gTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70412311	70412311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	24	265	0	ENST00000373644.4:c.4421A>T	p.Lys1474Ile	p.K1474I	ENST00000373644	NM_030625.2	1474	aAa/aTa																																																																														
NUF2	83540	MSKCC	GRCh37	1	163297295	163297295	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	71	435	0	ENST00000271452.3:c.141G>C	p.Met47Ile	p.M47I	ENST00000271452	NM_145697.2	47	atG/atC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717694	89717694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	49	396	0	ENST00000371953.3:c.719A>G	p.Tyr240Cys	p.Y240C	ENST00000371953	NM_000314.4	240	tAc/tGc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104375050	104375050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	34	455	0	ENST00000369902.3:c.1048G>T	p.Asp350Tyr	p.D350Y	ENST00000369902	NM_016169.3	350	Gac/Tac																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248544	8248544	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs201874026		P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	36	507	0	ENST00000335790.3:c.343G>C	p.Ala115Pro	p.A115P	ENST00000335790	NM_002315.2	115	Gcc/Ccc																																																																														
FGF4	2249	MSKCC	GRCh37	11	69589554	69589554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	19	145	0	ENST00000168712.1:c.299C>A	p.Pro100His	p.P100H	ENST00000168712	NM_002007.2	100	cCc/cAc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77051785	77051785	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	100	405	0	ENST00000356341.3:c.1022G>A	p.Trp341Ter	p.W341*	ENST00000356341	NM_002576.4	341	tGg/tAg																																																																														
BIRC3	330	MSKCC	GRCh37	11	102206942	102206942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	26	306	0	ENST00000263464.3:c.1570C>A	p.His524Asn	p.H524N	ENST00000263464	NM_001165.4	524	Cat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108143554	108143554	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	53	441	0	ENST00000278616.4:c.3259A>T	p.Met1087Leu	p.M1087L	ENST00000278616	NM_000051.3	1087	Atg/Ttg																																																																														
ATM	472	MSKCC	GRCh37	11	108202225	108202225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	38	420	0	ENST00000278616.4:c.7570G>T	p.Ala2524Ser	p.A2524S	ENST00000278616	NM_000051.3	2524	Gct/Tct																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373407	118373407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	80	442	0	ENST00000534358.1:c.6800C>T	p.Ser2267Leu	p.S2267L	ENST00000534358	NM_005933.3	2267	tCa/tTa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125499135	125499135	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	68	515	0	ENST00000428830.2:c.298A>T	p.Ile100Leu	p.I100L	ENST00000428830	NM_001114121.2	100	Ata/Tta																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49433749	49433749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	78	718	1	ENST00000301067.7:c.7804G>T	p.Gly2602Trp	p.G2602W	ENST00000301067	NM_003482.3	2602	Ggg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447076	49447076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	73	508	0	ENST00000301067.7:c.868G>T	p.Val290Phe	p.V290F	ENST00000301067	NM_003482.3	290	Gtt/Ttt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114169	115114169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	86	563	0	ENST00000257566.3:c.1048G>T	p.Ala350Ser	p.A350S	ENST00000257566	NM_016569.3	350	Gcc/Tcc																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281513	49281513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	75	625	0	ENST00000282018.3:c.560G>T	p.Cys187Phe	p.C187F	ENST00000282018	NM_020377.2	187	tGc/tTc																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524625	103524625	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	34	289	0	ENST00000355739.4:c.2756G>C	p.Arg919Pro	p.R919P	ENST00000355739	NM_000123.3	919	cGg/cCg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435772	110435772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	23	105	0	ENST00000375856.3:c.2629C>A	p.Pro877Thr	p.P877T	ENST00000375856	NM_003749.2	877	Ccg/Acg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610581	81610581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	36	331	0	ENST00000298171.2:c.2179G>C	p.Glu727Gln	p.E727Q	ENST00000298171	NM_000369.2	727	Gag/Cag																																																																														
MGA	23269	MSKCC	GRCh37	15	42059011	42059011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	40	405	0	ENST00000219905.7:c.8731G>A	p.Glu2911Lys	p.E2911K	ENST00000219905	NM_001164273.1	2911	Gag/Aag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2122875	2122876	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	63	521	0	ENST00000219476.3:c.2246_2247del	p.Arg749ProfsTer12	p.R749Pfs*12	ENST00000219476	NM_000548.3	749	cGG/c																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857708	9857708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	42	457	0	ENST00000330684.3:c.3693G>T	p.Arg1231Ser	p.R1231S	ENST00000330684	NM_001134407.1	1231	agG/agT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9934560	9934560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	51	387	0	ENST00000330684.3:c.1595G>T	p.Gly532Val	p.G532V	ENST00000330684	NM_001134407.1	532	gGa/gTa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041798	14041798	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	45	499	0	ENST00000311895.7:c.2345A>G	p.Asn782Ser	p.N782S	ENST00000311895	NM_005236.2	782	aAt/aGt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028665	12028665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	78	412	0	ENST00000353533.5:c.868G>T	p.Val290Phe	p.V290F	ENST00000353533	NM_003010.3	290	Gtc/Ttc																																																																														
NF1	4763	MSKCC	GRCh37	17	29562698	29562698	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	119	471	0	ENST00000358273.4:c.3778A>T	p.Met1260Leu	p.M1260L	ENST00000358273	NM_001042492.2	1260	Atg/Ttg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30302714	30302714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	83	445	0	ENST00000322652.5:c.805G>C	p.Glu269Gln	p.E269Q	ENST00000322652	NM_015355.2	269	Gaa/Caa																																																																														
RARA	5914	MSKCC	GRCh37	17	38511673	38511673	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	51	441	0	ENST00000254066.5:c.1171G>T	p.Gly391Trp	p.G391W	ENST00000254066	NM_000964.3	391	Ggg/Tgg																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74732917	74732917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	34	176	0	ENST00000359995.5:c.326G>T	p.Arg109Met	p.R109M	ENST00000359995	NM_001195427.1	109	aGg/aTg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573553	48573553	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	38	241	0	ENST00000342988.3:c.137A>T	p.Lys46Met	p.K46M	ENST00000342988	NM_005359.5	46	aAg/aTg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602463	10602463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	92	561	0	ENST00000171111.5:c.1115G>T	p.Gly372Val	p.G372V	ENST00000171111	NM_203500.1	372	gGg/gTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955048	17955048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	93	635	0	ENST00000458235.1:c.179C>A	p.Ala60Asp	p.A60D	ENST00000458235	NM_000215.3	60	gCc/gAc																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33792385	33792385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	38	570	1	ENST00000498907.2:c.936G>T	p.Gln312His	p.Q312H	ENST00000498907	NM_004364.3	312	caG/caT																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082536	16082536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	55	497	0	ENST00000281043.3:c.350G>T	p.Trp117Leu	p.W117L	ENST00000281043	NM_005378.4	117	tGg/tTg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469622	25469622	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	52	608	0	ENST00000264709.3:c.1146G>C	p.Lys382Asn	p.K382N	ENST00000264709	NM_175629.2	382	aaG/aaC																																																																														
ALK	238	MSKCC	GRCh37	2	29446286	29446286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	80	638	0	ENST00000389048.3:c.3281C>A	p.Pro1094His	p.P1094H	ENST00000389048	NM_004304.4	1094	cCc/cAc																																																																														
ALK	238	MSKCC	GRCh37	2	29473971	29473971	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	36	535	0	ENST00000389048.3:c.2204G>C	p.Ser735Thr	p.S735T	ENST00000389048	NM_004304.4	735	aGc/aCc																																																																														
ALK	238	MSKCC	GRCh37	2	29474077	29474077	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	40	578	0	ENST00000389048.3:c.2098C>T	p.Gln700Ter	p.Q700*	ENST00000389048	NM_004304.4	700	Cag/Tag																																																																														
ALK	238	MSKCC	GRCh37	2	30143423	30143423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	51	311	0	ENST00000389048.3:c.103G>T	p.Gly35Trp	p.G35W	ENST00000389048	NM_004304.4	35	Ggg/Tgg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99181134	99181134	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	55	516	0	ENST00000074304.5:c.2075A>T	p.Lys692Met	p.K692M	ENST00000074304	NM_001134224.1	692	aAg/aTg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376233	225376233	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	78	446	0	ENST00000264414.4:c.721A>G	p.Ile241Val	p.I241V	ENST00000264414	NM_003590.4	241	Att/Gtt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794431	242794431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	53	612	0	ENST00000334409.5:c.511G>T	p.Val171Phe	p.V171F	ENST00000334409	NM_005018.2	171	Gtt/Ttt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31017842	31017842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	66	571	1	ENST00000375687.4:c.704G>T	p.Arg235Leu	p.R235L	ENST00000375687	NM_015338.5	235	cGg/cTg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384628	31384628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	72	569	0	ENST00000328111.2:c.1330G>T	p.Val444Leu	p.V444L	ENST00000328111	NM_006892.3	444	Gtg/Ttg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31394054	31394054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	82	330	0	ENST00000328111.2:c.2341A>G	p.Ile781Val	p.I781V	ENST00000328111	NM_006892.3	781	Atc/Gtc																																																																														
AURKA	6790	MSKCC	GRCh37	20	54961561	54961561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	30	388	0	ENST00000312783.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000312783	NM_198436.1	24	cGt/cTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478617	57478617	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	55	438	0	ENST00000371085.3:c.289A>T	p.Asn97Tyr	p.N97Y	ENST00000371085	NM_000516.4	97	Aac/Tac																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484255	57484255	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	108	400	0	ENST00000371085.3:c.569A>C	p.Tyr190Ser	p.Y190S	ENST00000371085	NM_000516.4	190	tAt/tCt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47147497	47147497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	86	444	0	ENST00000409792.3:c.4829A>G	p.Lys1610Arg	p.K1610R	ENST00000409792	NM_014159.6	1610	aAg/aGg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52623272	52623272	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	33	238	0	ENST00000394830.3:c.2780-1G>A		p.X927_splice	ENST00000394830	NM_018313.4	927																																																																															
PBRM1	55193	MSKCC	GRCh37	3	52649433	52649433	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	100	600	0	ENST00000394830.3:c.1858G>T	p.Glu620Ter	p.E620*	ENST00000394830	NM_018313.4	620	Gag/Tag																																																																														
KIT	3815	MSKCC	GRCh37	4	55524249	55524249	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	83	396	0	ENST00000288135.5:c.67+1G>T		p.X23_splice	ENST00000288135	NM_000222.2	23																																																																															
TET2	54790	MSKCC	GRCh37	4	106155876	106155876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	70	435	0	ENST00000380013.4:c.777G>T	p.Glu259Asp	p.E259D	ENST00000380013	NM_001127208.2	259	gaG/gaT																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38953183	38953183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	57	255	1	ENST00000357387.3:c.2801G>T	p.Gly934Val	p.G934V	ENST00000357387	NM_152756.3	934	gGc/gTc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056560	26056560	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	24	225	0	ENST00000343677.2:c.97C>A	p.Arg33Ser	p.R33S	ENST00000343677	NM_005319.3	33	Cgt/Agt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056576	26056576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	51	228	0	ENST00000343677.2:c.81G>T	p.Lys27Asn	p.K27N	ENST00000343677	NM_005319.3	27	aaG/aaT																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197463	26197463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	55	248	0	ENST00000356476.2:c.16C>A	p.Gln6Lys	p.Q6K	ENST00000356476		6	Cag/Aag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168659	32168659	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	124	501	0	ENST00000375023.3:c.4264G>T	p.Glu1422Ter	p.E1422*	ENST00000375023	NM_004557.3	1422	Gag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32178542	32178542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	91	429	0	ENST00000375023.3:c.2852G>T	p.Gly951Val	p.G951V	ENST00000375023	NM_004557.3	951	gGg/gTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94128982	94128982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	36	325	0	ENST00000369303.4:c.78G>T	p.Glu26Asp	p.E26D	ENST00000369303	NM_004440.3	26	gaG/gaT																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38139077	38139077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	108	506	0	ENST00000317025.8:c.3526G>T	p.Gly1176Cys	p.G1176C	ENST00000317025	NM_023034.1	1176	Ggt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68984783	68984783	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	62	367	0	ENST00000288368.4:c.1547T>A	p.Leu516Gln	p.L516Q	ENST00000288368	NM_024870.2	516	cTg/cAg																																																																														
NBN	4683	MSKCC	GRCh37	8	90993699	90993699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	30	293	0	ENST00000265433.3:c.224G>T	p.Gly75Val	p.G75V	ENST00000265433	NM_002485.4	75	gGt/gTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449734	8449734	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	54	452	0	ENST00000356435.5:c.3979C>G	p.Gln1327Glu	p.Q1327E	ENST00000356435		1327	Caa/Gaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8485981	8485981	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	72	494	0	ENST00000356435.5:c.2836G>T	p.Glu946Ter	p.E946*	ENST00000356435		946	Gag/Tag																																																																														
TEK	7010	MSKCC	GRCh37	9	27157971	27157971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	51	490	0	ENST00000380036.4:c.195G>C	p.Met65Ile	p.M65I	ENST00000380036	NM_000459.3	65	atG/atC																																																																														
PAX5	5079	MSKCC	GRCh37	9	37006527	37006527	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	46	364	0	ENST00000358127.4:c.418C>G	p.Arg140Gly	p.R140G	ENST00000358127	NM_001280556.1	140	Cgg/Ggg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250028	110250028	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	56	534	0	ENST00000374672.4:c.647A>T	p.Gln216Leu	p.Q216L	ENST00000374672	NM_004235.4	216	cAg/cTg																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139562798	139562798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	59	640	0	ENST00000308874.7:c.64C>G	p.His22Asp	p.H22D	ENST00000308874		22	Cac/Gac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239954	53239954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	88	272	0	ENST00000375401.3:c.1487G>T	p.Gly496Val	p.G496V	ENST00000375401	NM_004187.3	496	gGc/gTc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50492758	50492760	+	missense_variant	Missense_Mutation	ONP	AAG	AAG	CAT			P-0034364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	70	500	0	ENST00000394963.4:c.1523_1525delinsCAT	p.Gln508_Ala509delinsProSer	p.Q508_A509delinsPS	ENST00000394963	NM_003076.4	508	cAAGcc/cCATcc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913559	32913559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	72	399	2	ENST00000380152.3:c.5073del	p.Lys1691AsnfsTer15	p.K1691Nfs*15	ENST00000380152		1689	gcA/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	183	614	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5243923	5243923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	123	450	0	ENST00000357368.4:c.1559C>T	p.Thr520Met	p.T520M	ENST00000357368	NM_002850.3	520	aCg/aTg																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	75	340	3	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539996	187539996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	39	439	0	ENST00000441802.2:c.7744G>A	p.Val2582Met	p.V2582M	ENST00000441802	NM_005245.3	2582	Gtg/Atg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	135	492	3	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	177	634	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40827886	40827886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201911869		P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	139	475	1	ENST00000373198.4:c.2542G>A	p.Gly848Arg	p.G848R	ENST00000373198	NM_133170.3	848	Gga/Aga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	139	405	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
PAX5	5079	MSKCC	GRCh37	9	37020764	37020764	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	151	448	1	ENST00000358127.4:c.81del	p.Phe27LeufsTer2	p.F27Lfs*2	ENST00000358127	NM_001280556.1	27	ttT/tt																																																																														
TET2	54790	MSKCC	GRCh37	4	106157385	106157385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	78	327	1	ENST00000380013.4:c.2290del	p.Gln764LysfsTer49	p.Q764Kfs*49	ENST00000380013	NM_001127208.2	762	caC/ca																																																																														
PARK2	5071	MSKCC	GRCh37	6	162394367	162394367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144032774		P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	134	487	1	ENST00000366898.1:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000366898	NM_004562.2	234	cGg/cAg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182601	99182601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	112	400	1	ENST00000074304.5:c.2404G>T	p.Gly802Cys	p.G802C	ENST00000074304	NM_001134224.1	802	Ggc/Tgc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	339	506	13	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	205	696	1	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	191	470	0	ENST00000412585.2:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																														
MLH1	4292	MSKCC	GRCh37	3	37089123	37089125	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	130	494	0	ENST00000231790.2:c.1852_1854delAAG	p.Lys618del	p.K618del	ENST00000231790	NM_000249.3	615	ctGAAg/ctg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26911748	26911748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	100	352	0	ENST00000381527.3:c.173G>T	p.Gly58Val	p.G58V	ENST00000381527	NM_001260.1	58	gGg/gTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681462	30681463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	129	467	0	ENST00000376406.3:c.549dup	p.Ser184IlefsTer14	p.S184Ifs*14	ENST00000376406	NM_014641.2	183	-/A																																																																														
ERF	2077	MSKCC	GRCh37	19	42753233	42753233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	228	647	1	ENST00000222329.4:c.1031G>A	p.Arg344His	p.R344H	ENST00000222329	NM_006494.2	344	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112170746	112170747	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	176	625	0	ENST00000257430.4:c.1847dup	p.Leu616PhefsTer18	p.L616Ffs*18	ENST00000257430	NM_000038.5	614	-/T																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443530	49443530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	154	507	0	ENST00000301067.7:c.3841G>A	p.Gly1281Arg	p.G1281R	ENST00000301067	NM_003482.3	1281	Gga/Aga																																																																														
CDK8	1024	MSKCC	GRCh37	13	26923269	26923269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	118	466	1	ENST00000381527.3:c.265G>A	p.Ala89Thr	p.A89T	ENST00000381527	NM_001260.1	89	Gct/Act																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821341	72821341	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200494604		P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	78	310	0	ENST00000268489.5:c.10834G>A	p.Ala3612Thr	p.A3612T	ENST00000268489	NM_006885.3	3612	Gcc/Acc																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108229	8108229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	146	544	0	ENST00000585124.1:c.995G>A	p.Arg332Gln	p.R332Q	ENST00000585124	NM_004217.3	332	cGg/cAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215573	5215573	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	125	620	0	ENST00000357368.4:c.4130A>T	p.Asp1377Val	p.D1377V	ENST00000357368	NM_002850.3	1377	gAc/gTc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36212162	36212162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	122	384	0	ENST00000222270.7:c.1913C>T	p.Ala638Val	p.A638V	ENST00000222270	NM_014727.1	638	gCc/gTc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42852421	42852421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	174	460	0	ENST00000398585.3:c.665G>A	p.Cys222Tyr	p.C222Y	ENST00000398585	NM_001135099.1	222	tGc/tAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467733	66467733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	127	424	0	ENST00000273854.3:c.536C>T	p.Ala179Val	p.A179V	ENST00000273854	NM_004439.5	179	gCc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112173317	112173318	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	68	234	0	ENST00000257430.4:c.2027_2028del	p.Ile676SerfsTer3	p.I676Sfs*3	ENST00000257430	NM_000038.5	676	ATa/a																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149503846	149503846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	162	553	1	ENST00000261799.4:c.1990G>A	p.Val664Met	p.V664M	ENST00000261799	NM_002609.3	664	Gtg/Atg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100399	157100399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	12	88	0	ENST00000346085.5:c.1337del	p.Pro446ArgfsTer56	p.P446Rfs*56	ENST00000346085	NM_020732.3	446	Ccg/cg																																																																														
MET	4233	MSKCC	GRCh37	7	116381069	116381069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	197	568	0	ENST00000397752.3:c.1691C>T	p.Ala564Val	p.A564V	ENST00000397752	NM_000245.2	564	gCa/gTa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275466	38275466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	179	605	0	ENST00000425967.3:c.1567G>A	p.Val523Met	p.V523M	ENST00000425967	NM_001174067.1	523	Gtg/Atg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47041567	47041567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	155	308	0	ENST00000329236.7:c.1558T>C	p.Tyr520His	p.Y520H	ENST00000329236	NM_001204466.1	520	Tac/Cac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246416	53246416	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	40	325	0	ENST00000375401.3:c.566A>G	p.Glu189Gly	p.E189G	ENST00000375401	NM_004187.3	189	gAa/gGa																																																																														
AR	367	MSKCC	GRCh37	X	66905902	66905902	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	24	224	0	ENST00000374690.3:c.1819T>A	p.Phe607Ile	p.F607I	ENST00000374690	NM_000044.3	607	Ttc/Atc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89866042	89866042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	140	462	2	ENST00000389301.3:c.797C>T	p.Thr266Met	p.T266M	ENST00000389301	NM_000135.2	266	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579315	7579315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	269	376	1	ENST00000269305.4:c.372C>A	p.Cys124Ter	p.C124*	ENST00000269305	NM_001126112.2	124	tgC/tgA																																																																														
MED12	9968	MSKCC	GRCh37	X	70342602	70342602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	163	500	0	ENST00000374080.3:c.1363C>T	p.Arg455Trp	p.R455W	ENST00000374080		455	Cgg/Tgg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137323779	137323779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	183	582	2	ENST00000481739.1:c.1072C>T	p.Arg358Trp	p.R358W	ENST00000481739	NM_002957.4	358	Cgg/Tgg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295694	212295694	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	128	408	0	ENST00000342788.4:c.2619A>C	p.Lys873Asn	p.K873N	ENST00000342788	NM_005235.2	873	aaA/aaC																																																																														
NF1	4763	MSKCC	GRCh37	17	29663430	29663432	+	missense_variant	Missense_Mutation	ONP	AGG	AGG	GGT			P-0034415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	111	467	0	ENST00000358273.4:c.6086_6088delinsGGT	p.Glu2029_Val2030delinsGlyLeu	p.E2029_V2030delinsGL	ENST00000358273	NM_001042492.2	2029	gAGGtg/gGGTtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	113	356	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	230	658	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	148	489	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	161	421	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
BRAF	673	MSKCC	GRCh37	7	140494148	140494148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	278	875	0	ENST00000288602.6:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000288602	NM_004333.4	367	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	228	652	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	138	404	0	ENST00000304494.5:c.458-1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	138	404	0	ENST00000304494.5:c.458-1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	138	404	0	ENST00000304494.5:c.458-1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49440489	49440501	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAGGGGTCGGA	GTGAGGGGTCGGA	-			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	251	691	0	ENST00000301067.7:c.4309_4321del	p.Ser1437AlafsTer65	p.S1437Afs*65	ENST00000301067	NM_003482.3	1437	TCCGACCCCTCACgc/gc																																																																														
NF2	4771	MSKCC	GRCh37	22	29999988	29999988	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	74	243	0	ENST00000338641.4:c.1A>G	p.Met1?	p.M1?	ENST00000338641	NM_000268.3	1	Atg/Gtg																																																																														
APC	324	MSKCC	GRCh37	5	112137003	112137003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	80	413	0	ENST00000257430.4:c.758del	p.Gly253AlafsTer40	p.G253Afs*40	ENST00000257430	NM_000038.5	253	Ggc/gc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117714402	117714402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	37	534	0	ENST00000368508.3:c.1247C>T	p.Ala416Val	p.A416V	ENST00000368508	NM_002944.2	416	gCt/gTt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001034	150001034	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	67	482	0	ENST00000253339.5:c.2570A>G	p.His857Arg	p.H857R	ENST00000253339		857	cAc/cGc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450257	50450257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	158	427	0	ENST00000331340.3:c.441C>G	p.Cys147Trp	p.C147W	ENST00000331340	NM_006060.4	147	tgC/tgG																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508424	106508424	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	70	275	0	ENST00000359195.3:c.418C>G	p.Arg140Gly	p.R140G	ENST00000359195	NM_002649.2	140	Cgg/Ggg																																																																														
MET	4233	MSKCC	GRCh37	7	116339818	116339818	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	219	576	0	ENST00000397752.3:c.680T>C	p.Met227Thr	p.M227T	ENST00000397752	NM_000245.2	227	aTg/aCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	112	176	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0034483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	183	249	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053267	180053267	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0034483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	254	636	0	ENST00000261937.6:c.1104-2A>T		p.X368_splice	ENST00000261937	NM_182925.4	368																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971092	21971092	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	150	243	1	ENST00000304494.5:c.266G>T	p.Gly89Val	p.G89V	ENST00000304494	NM_000077.4	89	gGc/gTc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971092	21971092	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	150	243	1	ENST00000304494.5:c.266G>T	p.Gly89Val	p.G89V	ENST00000304494	NM_000077.4	89	gGc/gTc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937833	76937836	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0034540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	480	526	0	ENST00000373344.5:c.2912_2915delAAGA	p.Lys971ThrfsTer31	p.K971Tfs*31	ENST00000373344	NM_000489.3	971	aAAGAc/ac																																																																														
MITF	4286	MSKCC	GRCh37	3	69928358	69928358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	146	326	0	ENST00000352241.4:c.178C>T	p.Arg60Cys	p.R60C	ENST00000352241	NM_198159.2	60	Cgc/Tgc																																																																														
PREX2	80243	MSKCC	GRCh37	8	69136840	69136840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	26	289	0	ENST00000288368.4:c.4754G>A	p.Arg1585Gln	p.R1585Q	ENST00000288368	NM_024870.2	1585	cGg/cAg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913719	32913720	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0034540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	116	328	0	ENST00000380152.3:c.5227_5228del	p.Ser1743Ter	p.S1743*	ENST00000380152		1743	AGt/t																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627152	37627152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	152	337	0	ENST00000447079.4:c.1067G>A	p.Arg356Lys	p.R356K	ENST00000447079	NM_015083.1	356	aGa/aAa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627221	37627221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	216	379	0	ENST00000447079.4:c.1136G>C	p.Ser379Thr	p.S379T	ENST00000447079	NM_015083.1	379	aGt/aCt																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18277076	18277076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	181	409	0	ENST00000222254.8:c.1523G>T	p.Arg508Leu	p.R508L	ENST00000222254	NM_005027.3	508	cGc/cTc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054787	5054787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	124	308	0	ENST00000381652.3:c.839C>T	p.Ser280Leu	p.S280L	ENST00000381652	NM_004972.3	280	tCa/tTa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5054826	5054826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	122	316	0	ENST00000381652.3:c.878A>G	p.Asn293Ser	p.N293S	ENST00000381652	NM_004972.3	293	aAc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	88	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	28	577	1	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954272	32954273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs886038189		P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	12	350	1	ENST00000380152.3:c.9253dup	p.Thr3085AsnfsTer26	p.T3085Nfs*26	ENST00000380152		3082	-/A																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610409	10610409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	207	610	0	ENST00000171111.5:c.301G>A	p.Ala101Thr	p.A101T	ENST00000171111	NM_203500.1	101	Gcc/Acc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16245932	16245932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	43	315	0	ENST00000375759.3:c.1555G>T	p.Val519Leu	p.V519L	ENST00000375759	NM_015001.2	519	Gtg/Ttg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40481781	40481781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	90	349	0	ENST00000264657.5:c.1123G>T	p.Val375Phe	p.V375F	ENST00000264657	NM_139276.2	375	Gtt/Ttt																																																																														
PARK2	5071	MSKCC	GRCh37	6	162206807	162206807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	40	265	0	ENST00000366898.1:c.868G>T	p.Val290Leu	p.V290L	ENST00000366898	NM_004562.2	290	Gtg/Ttg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136173	11136173	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	115	519	0	ENST00000344626.4:c.3157C>T	p.Gln1053Ter	p.Q1053*	ENST00000344626	NM_003072.3	1053	Cag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786767	3786767	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	44	501	0	ENST00000262367.5:c.4444T>G	p.Tyr1482Asp	p.Y1482D	ENST00000262367	NM_004380.2	1482	Tac/Gac																																																																														
RHOA	387	MSKCC	GRCh37	3	49397719	49397719	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	71	565	0	ENST00000418115.1:c.505G>T	p.Glu169Ter	p.E169*	ENST00000418115	NM_001664.2	169	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	113	544	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
FAT1	2195	MSKCC	GRCh37	4	187539267	187539267	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202043464		P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	38	422	0	ENST00000441802.2:c.8473G>A	p.Gly2825Arg	p.G2825R	ENST00000441802	NM_005245.3	2825	Gga/Aga																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98229688	98229688	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	20	214	0	ENST00000331920.6:c.2270T>C	p.Phe757Ser	p.F757S	ENST00000331920	NM_000264.3	757	tTt/tCt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257167	16257167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	49	475	0	ENST00000375759.3:c.4432A>G	p.Lys1478Glu	p.K1478E	ENST00000375759	NM_015001.2	1478	Aaa/Gaa																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46511657	46511657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	134	550	0	ENST00000262741.5:c.1120G>C	p.Gly374Arg	p.G374R	ENST00000262741	NM_003629.3	374	Ggg/Cgg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332984	70332984	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	129	654	2	ENST00000373644.4:c.889T>C	p.Tyr297His	p.Y297H	ENST00000373644	NM_030625.2	297	Tac/Cac																																																																														
FLT1	2321	MSKCC	GRCh37	13	28891691	28891691	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	159	596	0	ENST00000282397.4:c.3330C>A	p.Cys1110Ter	p.C1110*	ENST00000282397	NM_002019.4	1110	tgC/tgA																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437968	110437968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	17	149	0	ENST00000375856.3:c.433G>A	p.Glu145Lys	p.E145K	ENST00000375856	NM_003749.2	145	Gag/Aag																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30069011	30069011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	35	420	0	ENST00000331968.5:c.1918C>T	p.Pro640Ser	p.P640S	ENST00000331968	NM_002742.2	640	Cct/Tct																																																																														
TSC2	7249	MSKCC	GRCh37	16	2120456	2120456	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	61	524	0	ENST00000219476.3:c.1717-1G>T		p.X573_splice	ENST00000219476	NM_000548.3	573																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3786752	3786752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	52	542	0	ENST00000262367.5:c.4459C>A	p.His1487Asn	p.H1487N	ENST00000262367	NM_004380.2	1487	Cac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984640	72984640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	146	714	1	ENST00000268489.5:c.2944del	p.Asp982ThrfsTer87	p.D982Tfs*87	ENST00000268489	NM_006885.3	982	Gac/ac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836623	89836623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	544	652	0	ENST00000389301.3:c.2267G>T	p.Arg756Leu	p.R756L	ENST00000389301	NM_000135.2	756	cGt/cTt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89871762	89871762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	299	516	0	ENST00000389301.3:c.635G>C	p.Arg212Thr	p.R212T	ENST00000389301	NM_000135.2	212	aGg/aCg																																																																														
NF1	4763	MSKCC	GRCh37	17	29654551	29654551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	71	222	0	ENST00000358273.4:c.5303A>T	p.Glu1768Val	p.E1768V	ENST00000358273	NM_001042492.2	1768	gAg/gTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440741	56440741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	56	503	0	ENST00000407977.2:c.477G>T	p.Trp159Cys	p.W159C	ENST00000407977		159	tgG/tgT																																																																														
BRD4	23476	MSKCC	GRCh37	19	15383634	15383634	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	34	405	0	ENST00000263377.2:c.277A>T	p.Asn93Tyr	p.N93Y	ENST00000263377	NM_058243.2	93	Aac/Tac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248393	212248393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	21	282	0	ENST00000342788.4:c.3874C>A	p.Pro1292Thr	p.P1292T	ENST00000342788	NM_005235.2	1292	Cca/Aca																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967176	134967176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	31	349	0	ENST00000398015.3:c.2515C>A	p.Gln839Lys	p.Q839K	ENST00000398015	NM_004441.4	839	Cag/Aag																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134967333	134967333	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	92	401	0	ENST00000398015.3:c.2672T>C	p.Val891Ala	p.V891A	ENST00000398015	NM_004441.4	891	gTg/gCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187510201	187510201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	34	454	0	ENST00000441802.2:c.13312C>A	p.Pro4438Thr	p.P4438T	ENST00000441802	NM_005245.3	4438	Ccc/Acc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31493340	31493340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	25	272	0	ENST00000344624.3:c.1816A>G	p.Met606Val	p.M606V	ENST00000344624		606	Atg/Gtg																																																																														
APC	324	MSKCC	GRCh37	5	112176294	112176294	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	75	263	0	ENST00000257430.4:c.5003A>T	p.Glu1668Val	p.E1668V	ENST00000257430	NM_000038.5	1668	gAg/gTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120249	94120249	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	31	308	0	ENST00000369303.4:c.802G>T	p.Gly268Cys	p.G268C	ENST00000369303	NM_004440.3	268	Ggc/Tgc																																																																														
MET	4233	MSKCC	GRCh37	7	116423470	116423470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	35	320	0	ENST00000397752.3:c.3745T>C	p.Trp1249Arg	p.W1249R	ENST00000397752	NM_000245.2	1249	Tgg/Cgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879241	151879241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	92	510	0	ENST00000262189.6:c.5704G>A	p.Val1902Ile	p.V1902I	ENST00000262189	NM_170606.2	1902	Gtt/Att																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78796929	78796929	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	83	530	0	ENST00000306801.3:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000306801	NM_020761.2	348	Cga/Tga																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176175942	176175942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	11	64	0	ENST00000367669.3:c.173C>T	p.Ser58Leu	p.S58L	ENST00000367669	NM_022457.5	58	tCg/tTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295220	1295220	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	73	210	0				ENST00000310581	NM_198253.2																																																																																
GNA11	2767	MSKCC	GRCh37	19	3119022	3119022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	128	600	5	ENST00000078429.4:c.706G>A	p.Asp236Asn	p.D236N	ENST00000078429	NM_002067.2	236	Gac/Aac																																																																														
MPL	4352	MSKCC	GRCh37	1	43814566	43814566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	230	339	0	ENST00000372470.3:c.1361G>A	p.Arg454Gln	p.R454Q	ENST00000372470	NM_005373.2	454	cGa/cAa																																																																														
ATM	472	MSKCC	GRCh37	11	108199939	108199947	+	inframe_deletion	In_Frame_Del	DEL	TAGGGAACA	TAGGGAACA	-			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	115	133	0	ENST00000278616.4:c.7283_7291del	p.Arg2428_His2430del	p.R2428_H2430del	ENST00000278616	NM_000051.3	2427	ctTAGGGAACAt/ctt																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281488	49281488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	98	595	0	ENST00000282018.3:c.535G>A	p.Glu179Lys	p.E179K	ENST00000282018	NM_020377.2	179	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	42041037	42041037	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	322	540	0	ENST00000219905.7:c.5415del	p.Asn1805LysfsTer33	p.N1805Kfs*33	ENST00000219905	NM_001164273.1	1805	aaT/aa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857178	9857178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	62	345	0	ENST00000330684.3:c.4223C>A	p.Thr1408Lys	p.T1408K	ENST00000330684	NM_001134407.1	1408	aCg/aAg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271919	15271919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	113	527	0	ENST00000263388.2:c.6520C>T	p.Arg2174Trp	p.R2174W	ENST00000263388	NM_000435.2	2174	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539216	187539216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	89	419	0	ENST00000441802.2:c.8524G>T	p.Gly2842Cys	p.G2842C	ENST00000441802	NM_005245.3	2842	Ggc/Tgc																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197318	26197318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	48	323	0	ENST00000356476.2:c.161G>A	p.Arg54His	p.R54H	ENST00000356476		54	cGc/cAc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979257	93979257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	70	307	0	ENST00000369303.4:c.1571G>T	p.Gly524Val	p.G524V	ENST00000369303	NM_004440.3	524	gGa/gTa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120828	94120828	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	117	519	0	ENST00000369303.4:c.223C>T	p.Gln75Ter	p.Q75*	ENST00000369303	NM_004440.3	75	Caa/Taa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39911407	39911407	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	138	424	0	ENST00000378444.4:c.5223del	p.Glu1742SerfsTer26	p.E1742Sfs*26	ENST00000378444	NM_001123385.1	1741	gtA/gt																																																																														
ATRX	546	MSKCC	GRCh37	X	76937702	76937702	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	163	475	0	ENST00000373344.5:c.3046A>T	p.Thr1016Ser	p.T1016S	ENST00000373344	NM_000489.3	1016	Act/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	121	404	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
AKT3	10000	MSKCC	GRCh37	1	243777010	243777010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200428825		P-0034580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	40	373	0	ENST00000263826.5:c.659G>A	p.Arg220His	p.R220H	ENST00000263826	NM_005465.4	220	cGt/cAt																																																																														
UPF1	5976	MSKCC	GRCh37	19	18964135	18964135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	44	438	0	ENST00000262803.5:c.1132G>T	p.Gly378Cys	p.G378C	ENST00000262803	NM_002911.3	378	Ggc/Tgc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24129414	24129414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	47	347	0	ENST00000263121.7:c.58G>C	p.Glu20Gln	p.E20Q	ENST00000263121	NM_003073.3	20	Gag/Cag																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1317476	1317476	+	downstream_gene_variant	3'Flank	SNP	C	C	G			P-0034580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	66	643	0				ENST00000381566																																																																																	
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0034604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	59	472	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
CRKL	1399	MSKCC	GRCh37	22	21272398	21272398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	138	839	1	ENST00000354336.3:c.176C>T	p.Ser59Phe	p.S59F	ENST00000354336	NM_005207.3	59	tCc/tTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16199562	16199562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	109	589	0	ENST00000375759.3:c.335G>T	p.Gly112Val	p.G112V	ENST00000375759	NM_015001.2	112	gGa/gTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242445	55242445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	68	474	0	ENST00000275493.2:c.2215A>C	p.Lys739Gln	p.K739Q	ENST00000275493	NM_005228.3	739	Aaa/Caa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859597	151859597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	128	649	0	ENST00000262189.6:c.11065T>C	p.Phe3689Leu	p.F3689L	ENST00000262189	NM_170606.2	3689	Ttc/Ctc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0034643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	94	422	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589663	67589663	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0034643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	54	188	0	ENST00000274335.5:c.1425+1G>T		p.X475_splice	ENST00000274335		475																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56180645	56180645	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	108	333	0	ENST00000399503.3:c.3974G>C	p.Trp1325Ser	p.W1325S	ENST00000399503	NM_005921.1	1325	tGg/tCg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044973	47044995	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTTCCCCAGCAAAGAGGCGCT	CAGTTCCCCAGCAAAGAGGCGCT	-			P-0034643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	208	396	0	ENST00000329236.7:c.2067_2089del	p.Gln689HisfsTer15	p.Q689Hfs*15	ENST00000329236	NM_001204466.1	689	CAGTTCCCCAGCAAAGAGGCGCTc/c																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	28	598	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	54	578	0	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109993	115109993	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	61	765	1	ENST00000257566.3:c.1885del	p.Leu629SerfsTer3	p.L629Sfs*3	ENST00000257566	NM_016569.3	629	Ctc/tc																																																																														
CDH1	999	MSKCC	GRCh37	16	68772253	68772263	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGAGCTACA	CGAGAGCTACA	-			P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	105	833	0	ENST00000261769.5:c.104_114del	p.Glu35ValfsTer20	p.E35Vfs*20	ENST00000261769	NM_004360.3	34	gcCGAGAGCTACAcg/gccg																																																																														
CALR	811	MSKCC	GRCh37	19	13051217	13051217	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	49	329	0	ENST00000316448.5:c.653A>T	p.Asp218Val	p.D218V	ENST00000316448	NM_004343.3	218	gAc/gTc																																																																														
MYD88	4615	MSKCC	GRCh37	3	38181432	38181432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	52	429	0	ENST00000396334.3:c.445A>C	p.Ser149Arg	p.S149R	ENST00000396334	NM_002468.4	149	Agc/Cgc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508683	106508683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	65	449	0	ENST00000359195.3:c.677G>A	p.Arg226His	p.R226H	ENST00000359195	NM_002649.2	226	cGc/cAc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458321	12458321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	410	654	1	ENST00000287820.6:c.938G>T	p.Cys313Phe	p.C313F	ENST00000287820	NM_015869.4	313	tGc/tTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100095	157100116	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGGCGGCAGCAGCAGGA	GGCGGCGGCGGCAGCAGCAGGA	-			P-0034680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	11	15	0	ENST00000346085.5:c.1044_1065del	p.Gly351MetfsTer11	p.G351Mfs*11	ENST00000346085	NM_020732.3	344	gcGGCGGCGGCGGCAGCAGCAGGA/gc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115809	8115812	+	frameshift_variant	Frame_Shift_Del	DEL	CCCC	CCCC	-			P-0034680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	248	561	0	ENST00000346208.3:c.1155_1158del	p.Phe385LeufsTer18	p.F385Lfs*18	ENST00000346208		385	ttCCCC/tt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49419984	49419986	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0034680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	179	410	0	ENST00000301067.7:c.15763_15765del	p.Phe5255del	p.F5255del	ENST00000301067	NM_003482.3	5255	TTC/-																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426691	49426691	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	116	316	0	ENST00000301067.7:c.11797C>T	p.Gln3933Ter	p.Q3933*	ENST00000301067	NM_003482.3	3933	Cag/Tag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43708506	43708506	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	94	740	0	ENST00000382044.4:c.4790A>G	p.Gln1597Arg	p.Q1597R	ENST00000382044	NM_001141980.1	1597	cAa/cGa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88680785	88680785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	31	533	0	ENST00000360948.2:c.472G>C	p.Glu158Gln	p.E158Q	ENST00000360948	NM_001012338.2	158	Gag/Cag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832476	72832476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	144	391	0	ENST00000268489.5:c.4105C>T	p.Gln1369Ter	p.Q1369*	ENST00000268489	NM_006885.3	1369	Cag/Tag																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774094	56774094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	89	549	0	ENST00000337432.4:c.445G>A	p.Gly149Arg	p.G149R	ENST00000337432	NM_058216.2	149	Gga/Aga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216215	36216215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	186	669	1	ENST00000222270.7:c.3623C>A	p.Ala1208Asp	p.A1208D	ENST00000222270	NM_014727.1	1208	gCc/gAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540088	187540149	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGTAAATATCTGTCCTCTCTCATTTATGTAAAATCTGTCTTTGGCAAAGTCATTTACAAT	AAAGTAAATATCTGTCCTCTCTCATTTATGTAAAATCTGTCTTTGGCAAAGTCATTTACAAT	-			P-0034680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	216	472	0	ENST00000441802.2:c.7591_7652del	p.Ile2531GlyfsTer4	p.I2531Gfs*4	ENST00000441802	NM_005245.3	2531	ATTGTAAATGACTTTGCCAAAGACAGATTTTACATAAATGAGAGAGGACAGATATTTACTTTg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	87	686	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																														
RET	5979	MSKCC	GRCh37	10	43615083	43615083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	118	755	0	ENST00000355710.3:c.2497C>T	p.Arg833Cys	p.R833C	ENST00000355710	NM_020975.4	833	Cgc/Tgc																																																																														
KIT	3815	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	323	489	0	ENST00000288135.5:c.1669T>A	p.Trp557Arg	p.W557R	ENST00000288135	NM_000222.2	557	Tgg/Agg																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276472	115276472	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	87	721	1	ENST00000438362.2:c.856G>T	p.Glu286Ter	p.E286*	ENST00000438362	NM_001242891.1	286	Gaa/Taa																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2489202	2489202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	101	771	1	ENST00000355716.4:c.107C>T	p.Ala36Val	p.A36V	ENST00000355716	NM_003820.2	36	gCc/gTc																																																																														
NUP93	9688	MSKCC	GRCh37	16	56878424	56878424	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	87	487	0	ENST00000308159.5:c.2363A>T	p.Gln788Leu	p.Q788L	ENST00000308159	NM_014669.4	788	cAa/cTa																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020909	26020913	+	frameshift_variant	Frame_Shift_Del	DEL	TAAAC	TAAAC	-			P-0034755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	97	486	0	ENST00000357647.3:c.194_198del	p.Lys65ThrfsTer14	p.K65Tfs*14	ENST00000357647	NM_003529.2	64	cgTAAACta/cgta																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	244	599	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0034767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	401	462	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
NBN	4683	MSKCC	GRCh37	8	90949255	90949255	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0034767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	118	314	0	ENST00000265433.3:c.2233A>T	p.Arg745Ter	p.R745*	ENST00000265433	NM_002485.4	745	Aga/Tga																																																																														
CBFB	865	MSKCC	GRCh37	16	67070642	67070644	+	frameshift_variant	Frame_Shift_Ins	INS	AAA	AAA	TTTCT			P-0034767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	108	239	0	ENST00000412916.2:c.266_268delinsTTTCT	p.Glu89ValfsTer10	p.E89Vfs*10	ENST00000412916		89	gAAAga/gTTTCTga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812260	212812260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	39	446	1	ENST00000342788.4:c.316C>T	p.Arg106Cys	p.R106C	ENST00000342788	NM_005235.2	106	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0034770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	89	266	1	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916946	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0034770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	185	459	0	ENST00000263967.3:c.332_334delAGA	p.Lys111del	p.K111del	ENST00000263967	NM_006218.2	111	AAG/-																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0034770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	119	367	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	322	642	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41526008	41526008	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0034770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	65	460	0	ENST00000263253.7:c.1282+1G>A		p.X428_splice	ENST00000263253	NM_001429.3	428																																																																															
PLCG2	5336	MSKCC	GRCh37	16	81942153	81942153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	221	618	0	ENST00000359376.3:c.1690C>T	p.Arg564Trp	p.R564W	ENST00000359376	NM_002661.3	564	Cgg/Tgg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89845236	89845236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	100	617	0	ENST00000389301.3:c.1799G>A	p.Arg600His	p.R600H	ENST00000389301	NM_000135.2	600	cGt/cAt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37673694	37673694	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0034770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	244	632	0	ENST00000447079.4:c.2848C>T	p.Arg950Ter	p.R950*	ENST00000447079	NM_015083.1	950	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42059279	42059279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	52	446	0	ENST00000219905.7:c.8999C>G	p.Ser3000Cys	p.S3000C	ENST00000219905	NM_001164273.1	3000	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	530	678	1	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074300	8074300	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	23	541	0	ENST00000377482.5:c.359T>G	p.Val120Gly	p.V120G	ENST00000377482	NM_018948.3	120	gTg/gGg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650863	37650863	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	187	645	0	ENST00000447079.4:c.2335del	p.Arg779ValfsTer3	p.R779Vfs*3	ENST00000447079	NM_015083.1	779	Cgt/gt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141568671	141568671	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	79	576	0	ENST00000220592.5:c.791G>A	p.Gly264Asp	p.G264D	ENST00000220592	NM_012154.3	264	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	143	535	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	76	484	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928100	178928100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	76	539	0	ENST00000263967.3:c.1378G>A	p.Gly460Ser	p.G460S	ENST00000263967	NM_006218.2	460	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	669	744	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	270	524	5	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	177	580	0	ENST00000335508.6:c.1998G>C	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaC																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325801	65325801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	140	432	0	ENST00000342505.4:c.1321C>G	p.His441Asp	p.H441D	ENST00000342505	NM_002227.2	441	Cat/Gat																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061135	38061153	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCCCCGCTTCCGCTCC	CTGCCCCCGCTTCCGCTCC	-			P-0034946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	117	89	0	ENST00000250448.2:c.836_854del	p.Gly279AlafsTer36	p.G279Afs*36	ENST00000250448	NM_004496.3	279	gGGAGCGGAAGCGGGGGCAGc/gc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827656	72827656	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	250	717	0	ENST00000268489.5:c.8925del	p.Glu2975AspfsTer32	p.E2975Dfs*32	ENST00000268489	NM_006885.3	2975	gaA/ga																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061162	38061192	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGGCCCCCGGCTGCTTCTCGCACTTGA	CCGCCGGCCCCCGGCTGCTTCTCGCACTTGA	GCGGGGGCGGG			P-0034946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	171	408	3	ENST00000250448.2:c.797_827delinsCCCGCCCCCGC	p.Phe266SerfsTer20	p.F266Sfs*20	ENST00000250448	NM_004496.3	266	tTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGc/tCCCGCCCCCGCc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	648	258	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	648	258	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578524	7578524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	252	528	0	ENST00000269305.4:c.406C>G	p.Gln136Glu	p.Q136E	ENST00000269305	NM_001126112.2	136	Caa/Gaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	648	258	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	530	526	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																														
TAP1	6890	MSKCC	GRCh37	6	32818230	32818230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147332077		P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	190	483	0	ENST00000354258.4:c.1295C>T	p.Ser432Leu	p.S432L	ENST00000354258	NM_000593.5	432	tCg/tTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261134	16261134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	178	344	0	ENST00000375759.3:c.8399C>T	p.Ala2800Val	p.A2800V	ENST00000375759	NM_015001.2	2800	gCg/gTg																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004224	29004224	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	236	257	0	ENST00000282397.4:c.1069A>G	p.Met357Val	p.M357V	ENST00000282397	NM_002019.4	357	Atg/Gtg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30047489	30047489	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	131	327	0	ENST00000331968.5:c.2512T>G	p.Trp838Gly	p.W838G	ENST00000331968	NM_002742.2	838	Tgg/Ggg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288489	15288489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	383	185	0	ENST00000263388.2:c.4250G>T	p.Cys1417Phe	p.C1417F	ENST00000263388	NM_000435.2	1417	tGc/tTc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248541	212248541	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	302	484	0	ENST00000342788.4:c.3726C>A	p.Tyr1242Ter	p.Y1242*	ENST00000342788	NM_005235.2	1242	taC/taA																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42840432	42840432	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	168	413	0	ENST00000398585.3:c.1316T>C	p.Val439Ala	p.V439A	ENST00000398585	NM_001135099.1	439	gTg/gCg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89448540	89448540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	295	309	0	ENST00000336596.2:c.1504G>T	p.Asp502Tyr	p.D502Y	ENST00000336596	NM_005233.5	502	Gac/Tac																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89462358	89462358	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	301	378	1	ENST00000336596.2:c.1830T>A	p.His610Gln	p.H610Q	ENST00000336596	NM_005233.5	610	caT/caA																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55130079	55130079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	156	446	1	ENST00000257290.5:c.613G>T	p.Val205Phe	p.V205F	ENST00000257290	NM_006206.4	205	Gtt/Ttt																																																																														
MSH3	4437	MSKCC	GRCh37	5	80088550	80088550	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0034375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	80	178	0	ENST00000265081.6:c.2544-2A>T		p.X848_splice	ENST00000265081	NM_002439.4	848																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9943749	9943749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	299	673	0	ENST00000330684.3:c.1192G>A	p.Asp398Asn	p.D398N	ENST00000330684	NM_001134407.1	398	Gac/Aac																																																																														
ATM	472	MSKCC	GRCh37	11	108196170	108196170	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	294	596	0	ENST00000278616.4:c.6706G>T	p.Glu2236Ter	p.E2236*	ENST00000278616	NM_000051.3	2236	Gaa/Taa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	105	503	0	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056560	26056560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	48	233	0	ENST00000343677.2:c.97C>T	p.Arg33Cys	p.R33C	ENST00000343677	NM_005319.3	33	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099014	27099015	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0034408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	97	422	0	ENST00000324856.7:c.3432_3433del	p.Gln1145AspfsTer47	p.Q1145Dfs*47	ENST00000324856	NM_006015.4	1144	CCc/c																																																																														
TSHR	7253	MSKCC	GRCh37	14	81557427	81557427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	75	497	0	ENST00000298171.2:c.407C>A	p.Thr136Asn	p.T136N	ENST00000298171	NM_000369.2	136	aCt/aAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	102	490	0	ENST00000342988.3:c.1081C>G	p.Arg361Gly	p.R361G	ENST00000342988	NM_005359.5	361	Cgc/Ggc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	373	468	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	372	608	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	134	255	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094360	27094360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	42	468	0	ENST00000324856.7:c.3068G>A	p.Trp1023Ter	p.W1023*	ENST00000324856	NM_006015.4	1023	tGg/tAg																																																																														
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	50	232	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460389	149460389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	112	487	0	ENST00000286301.3:c.248G>A	p.Arg83His	p.R83H	ENST00000286301	NM_005211.3	83	cGc/cAc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18971135	18971135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	63	515	0	ENST00000262803.5:c.2188C>T	p.Arg730Cys	p.R730C	ENST00000262803	NM_002911.3	730	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576913	7576914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	68	527	0	ENST00000269305.4:c.932dupA	p.Asn311LysfsTer26	p.N311Kfs*26	ENST00000269305	NM_001126112.2	311	aac/aaAc																																																																														
PTP4A1	7803	MSKCC	GRCh37	6	64288422	64288423	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCC			P-0034411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	43	319	0	ENST00000370651.3:c.189_192dup	p.Val65ProfsTer4	p.V65Pfs*4	ENST00000370651	NM_003463.4	62	-/ATCC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	154	520	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	133	348	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091782	29091782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	97	408	2	ENST00000328354.6:c.1175C>T	p.Ala392Val	p.A392V	ENST00000328354	NM_007194.3	392	gCg/gTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5239043	5239043	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	54	475	0	ENST00000357368.4:c.1736A>C	p.Tyr579Ser	p.Y579S	ENST00000357368	NM_002850.3	579	tAc/tCc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145741974	145741974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	49	521	0	ENST00000428558.2:c.529G>A	p.Ala177Thr	p.A177T	ENST00000428558	NM_004260.3	177	Gca/Aca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	258	404	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	90	423	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156844187	156844187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	192	618	3	ENST00000524377.1:c.1190C>T	p.Pro397Leu	p.P397L	ENST00000524377	NM_002529.3	397	cCg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	84	314	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604754	48604754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	144	363	0	ENST00000342988.3:c.1576G>A	p.Glu526Lys	p.E526K	ENST00000342988	NM_005359.5	526	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643942	52643943	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	138	427	0	ENST00000394830.3:c.1953dup	p.Ser652IlefsTer13	p.S652Ifs*13	ENST00000394830	NM_018313.4	651	-/A																																																																														
APC	324	MSKCC	GRCh37	5	112175452	112175452	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	280	325	0	ENST00000257430.4:c.4161T>A	p.Cys1387Ter	p.C1387*	ENST00000257430	NM_000038.5	1387	tgT/tgA																																																																														
ELF3	1999	MSKCC	GRCh37	1	201980307	201980307	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	196	610	0	ENST00000359651.3:c.43T>G	p.Phe15Val	p.F15V	ENST00000359651		15	Ttc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578379	7578380	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	141	504	0	ENST00000269305.4:c.550_551delinsTG	p.Asp184Cys	p.D184C	ENST00000269305	NM_001126112.2	184	GAt/TGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578386	7578401	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGCTCATGGTGGGG	AGCGCTCATGGTGGGG	-			P-0034413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	149	509	1	ENST00000269305.4:c.529_544del	p.Pro177AlafsTer65	p.P177Afs*65	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTgc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0034418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	174	539	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274034	10274034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	249	667	0	ENST00000330684.3:c.235C>T	p.Pro79Ser	p.P79S	ENST00000330684	NM_001134407.1	79	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	290	669	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579401	7579401	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	372	876	0	ENST00000269305.4:c.286del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	Tct/ct																																																																														
ALK	238	MSKCC	GRCh37	2	29455239	29455239	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	185	742	0	ENST00000389048.3:c.2563A>T	p.Thr855Ser	p.T855S	ENST00000389048	NM_004304.4	855	Acg/Tcg																																																																														
MED12	9968	MSKCC	GRCh37	X	70345312	70345312	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	65	871	0	ENST00000374080.3:c.2338A>G	p.Lys780Glu	p.K780E	ENST00000374080		780	Aag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	271	677	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0034472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	164	328	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
HRAS	3265	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	475	836	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	222	498	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061317	38061317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	452	787	0	ENST00000250448.2:c.672C>A	p.Phe224Leu	p.F224L	ENST00000250448	NM_004496.3	224	ttC/ttA																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026193	71026193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0034472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	230	473	0	ENST00000318789.4:c.1429G>C	p.Ala477Pro	p.A477P	ENST00000318789	NM_032682.5	477	Gcc/Ccc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	350	355	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	195	382	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	176	393	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858184	9858184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	332	621	0	ENST00000330684.3:c.3217G>A	p.Glu1073Lys	p.E1073K	ENST00000330684	NM_001134407.1	1073	Gaa/Aaa																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	478	429	0	ENST00000257904.6:c.71G>A	p.Arg24His	p.R24H	ENST00000257904	NM_000075.3	24	cGt/cAt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434944	110434946	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	556	993	0	ENST00000375856.3:c.3455_3457del	p.Phe1152del	p.F1152del	ENST00000375856	NM_003749.2	1152	tTCTcc/tcc																																																																														
ALK	238	MSKCC	GRCh37	2	29420414	29420414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	263	498	0	ENST00000389048.3:c.4067G>A	p.Gly1356Glu	p.G1356E	ENST00000389048	NM_004304.4	1356	gGg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	303	504	0				ENST00000310581	NM_198253.2																																																																																
SESN3	143686	MSKCC	GRCh37	11	94910992	94910992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	741	680	0	ENST00000536441.1:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000536441	NM_144665.3	380	Cgg/Tgg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3651077	3651089	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGCTTCAAGTG	ACTGCTTCAAGTG	-			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	385	708	0	ENST00000294008.3:c.1054_1066del	p.His352ValfsTer3	p.H352Vfs*3	ENST00000294008	NM_032444.2	352	CACTTGAAGCAGTgt/gt																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78820366	78820366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	316	577	0	ENST00000306801.3:c.1306G>A	p.Val436Ile	p.V436I	ENST00000306801	NM_020761.2	436	Gtc/Atc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2217024	2217024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1375	402	823	1	ENST00000398665.3:c.2479C>T	p.Pro827Ser	p.P827S	ENST00000398665	NM_032482.2	827	Cct/Tct																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5244141	5244141	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	1083	731	0	ENST00000357368.4:c.1341G>A	p.Trp447Ter	p.W447*	ENST00000357368	NM_002850.3	447	tgG/tgA																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224670	36224671	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	626	881	0	ENST00000222270.7:c.7056_7057delinsTT	p.Gln2353Ter	p.Q2353*	ENST00000222270	NM_014727.1	2352	ctCCag/ctTTag																																																																														
ERF	2077	MSKCC	GRCh37	19	42753512	42753512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	535	705	1	ENST00000222329.4:c.752C>T	p.Ser251Leu	p.S251L	ENST00000222329	NM_006494.2	251	tCg/tTg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024380	31024380	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	682	662	0	ENST00000375687.4:c.3865C>G	p.Arg1289Gly	p.R1289G	ENST00000375687	NM_015338.5	1289	Cgg/Ggg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32172090	32172090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	814	814	0	ENST00000375023.3:c.2942G>A	p.Gly981Glu	p.G981E	ENST00000375023	NM_004557.3	981	gGa/gAa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371728	55371728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	341	572	1	ENST00000297316.4:c.418C>T	p.Arg140Trp	p.R140W	ENST00000297316	NM_022454.3	140	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	146	446	0				ENST00000310581	NM_198253.2																																																																																
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	248	557	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222829	36222829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	381	952	0	ENST00000222270.7:c.5458C>A	p.Pro1820Thr	p.P1820T	ENST00000222270	NM_014727.1	1820	Ccc/Acc																																																																														
NF2	4771	MSKCC	GRCh37	22	30051665	30051673	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGAGGCC	GGTGAGGCC	-			P-0034291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	114	317	0	ENST00000338641.4:c.599_599+8del		p.X200_splice	ENST00000338641	NM_000268.3	200																																																																															
CDK6	1021	MSKCC	GRCh37	7	92462582	92462582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	163	524	0	ENST00000265734.4:c.56T>C	p.Ile19Thr	p.I19T	ENST00000265734	NM_001259.6	19	aTc/aCc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570427	87570427	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	248	716	0	ENST00000277120.3:c.2167T>G	p.Tyr723Asp	p.Y723D	ENST00000277120		723	Tac/Gac																																																																														
TET2	54790	MSKCC	GRCh37	4	106196879	106196881	+	frameshift_variant	Frame_Shift_Del	DEL	TCT	TCT	CC			P-0034296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	59	349	0	ENST00000380013.4:c.5212_5214delinsCC	p.Ser1738ProfsTer7	p.S1738Pfs*7	ENST00000380013	NM_001127208.2	1738	TCT/CC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	47	438	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	104	633	0	ENST00000269305.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000269305	NM_001126112.2	274	Gtt/Ctt																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	30	312	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0034380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	41	378	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44513309	44513309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	78	540	3	ENST00000291552.4:c.626G>A	p.Arg209His	p.R209H	ENST00000291552	NM_006758.2	209	cGt/cAt																																																																														
MGA	23269	MSKCC	GRCh37	15	42003452	42003452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	19	473	0	ENST00000219905.7:c.2989G>A	p.Asp997Asn	p.D997N	ENST00000219905	NM_001164273.1	997	Gac/Aac																																																																														
BAP1	8314	MSKCC	GRCh37	3	52437842	52437843	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0034399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	120	557	0	ENST00000460680.1:c.1318_1319del	p.Leu440AlafsTer10	p.L440Afs*10	ENST00000460680	NM_004656.3	440	CTg/g																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007629-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			164	278	339	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007629-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	401	436	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007629-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	269	328	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
MTOR	2475	MSKCC	GRCh37	1	11293481	11293481	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007629-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	181	429	0	ENST00000361445.4:c.2395C>G	p.Leu799Val	p.L799V	ENST00000361445	NM_004958.3	799	Ctg/Gtg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39239301	39239301	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007629-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	276	414	0	ENST00000402219.2:c.2356C>T	p.Arg786Ter	p.R786*	ENST00000402219	NM_005633.3	786	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72828504	72828504	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	372	680	1	ENST00000268489.5:c.8077C>T	p.Arg2693Ter	p.R2693*	ENST00000268489	NM_006885.3	2693	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720869	89720869	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	207	405	0	ENST00000371953.3:c.1023del	p.Phe341LeufsTer3	p.F341Lfs*3	ENST00000371953	NM_000314.4	340	aaT/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420880	49420892	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGATGAGGC	CAGGGGATGAGGC	-			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	242	569	1	ENST00000301067.7:c.14857_14869del	p.Ala4953AsnfsTer38	p.A4953Nfs*38	ENST00000301067	NM_003482.3	4953	GCCTCATCCCCTGaa/aa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909660	50909684	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTAGGTGCTGCTGCGGGAGTACAAG	CTAGGTGCTGCTGCGGGAGTACAAG	-			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			861	135	627	0	ENST00000440232.2:c.1384-2_1406del		p.X462_splice	ENST00000440232	NM_002691.3	462																																																																															
TERT	7015	MSKCC	GRCh37	5	1280272	1280272	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1203	458	729	1	ENST00000310581.5:c.1950+1G>C		p.X650_splice	ENST00000310581	NM_198253.2	650																																																																															
NBN	4683	MSKCC	GRCh37	8	90982755	90982755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	485	343	0	ENST00000265433.3:c.733G>A	p.Gly245Arg	p.G245R	ENST00000265433	NM_002485.4	245	Gga/Aga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32914412	32914438	+	protein_altering_variant	In_Frame_Del	DEL	ACTTGTGGGATTTTTAGCACAGCAAGT	ACTTGTGGGATTTTTAGCACAGCAAGT	CTG			P-0033701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	139	607	0	ENST00000380152.3:c.5920_5946delinsCTG	p.Thr1974_Ser1982delinsLeu	p.T1974_S1982delinsL	ENST00000380152		1974	ACTTGTGGGATTTTTAGCACAGCAAGT/CTG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	250	537	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372320	55372320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	164	579	0	ENST00000297316.4:c.1010C>T	p.Pro337Leu	p.P337L	ENST00000297316	NM_022454.3	337	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0034257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	54	254	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175749	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTAT	TACTTTAT	-			P-0034257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	107	234	0	ENST00000257430.4:c.4461_4468delTTTATTAC	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1486	gaTACTTTATta/gata																																																																														
ARAF	369	MSKCC	GRCh37	X	47426725	47426725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	263	323	0	ENST00000377045.4:c.970G>A	p.Val324Met	p.V324M	ENST00000377045	NM_001654.4	324	Gtg/Atg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138198390	138198390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	73	282	0	ENST00000237289.4:c.983C>G	p.Ala328Gly	p.A328G	ENST00000237289	NM_001270507.1	328	gCa/gGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0034261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	248	776	4	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	194	550	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	173	453	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	20	434	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0034366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	259	530	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0034366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	83	583	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga																																																																														
FLCN	201163	MSKCC	GRCh37	17	17125831	17125831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	73	557	0	ENST00000285071.4:c.763C>T	p.His255Tyr	p.H255Y	ENST00000285071	NM_144997.5	255	Cac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0034367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	29	304	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	23	239	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	37	310	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228979	36228979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	48	438	0	ENST00000222270.7:c.7759C>T	p.Arg2587Ter	p.R2587*	ENST00000222270	NM_014727.1	2587	Cga/Tga																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133887	41133887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	31	238	0	ENST00000379561.5:c.1741G>A	p.Val581Met	p.V581M	ENST00000379561	NM_002015.3	581	Gtg/Atg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650665	67650665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	47	302	0	ENST00000264010.4:c.970T>C	p.Cys324Arg	p.C324R	ENST00000264010	NM_006565.3	324	Tgc/Cgc																																																																														
INSR	3643	MSKCC	GRCh37	19	7141749	7141749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	54	446	0	ENST00000302850.5:c.2621C>T	p.Pro874Leu	p.P874L	ENST00000302850	NM_000208.2	874	cCg/cTg																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22160239	22160239	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	32	247	0	ENST00000215832.6:c.392A>T	p.Tyr131Phe	p.Y131F	ENST00000215832	NM_002745.4	131	tAc/tTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0034378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	41	443	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37665992	37665992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	73	425	0	ENST00000447079.4:c.2644C>T	p.Arg882Trp	p.R882W	ENST00000447079	NM_015083.1	882	Cgg/Tgg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571444	95571451	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCGCT	GCATCGCT	-			P-0034378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	84	279	0	ENST00000343455.3:c.3226_3233del	p.Ser1076TrpfsTer12	p.S1076Wfs*12	ENST00000343455	NM_177438.2	1076	AGCGATGCt/t																																																																														
CDK12	51755	MSKCC	GRCh37	17	37650818	37650818	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	159	592	0	ENST00000447079.4:c.2292del	p.Glu765ArgfsTer17	p.E765Rfs*17	ENST00000447079	NM_015083.1	764	Aaa/aa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602838	10602838	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	56	738	1	ENST00000171111.5:c.740A>T	p.His247Leu	p.H247L	ENST00000171111	NM_203500.1	247	cAc/cTc																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80537103	80537103	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	42	572	0	ENST00000286548.4:c.295A>T	p.Ile99Phe	p.I99F	ENST00000286548	NM_002072.3	99	Atc/Ttc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188078	11188078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006263-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			430	83	484	0	ENST00000361445.4:c.6016G>T	p.Val2006Phe	p.V2006F	ENST00000361445	NM_004958.3	2006	Gtc/Ttc																																																																														
VHL	7428	MSKCC	GRCh37	3	10183703	10183703	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006263-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			481	121	539	0	ENST00000256474.2:c.172del	p.Arg58GlyfsTer9	p.R58Gfs*9	ENST00000256474	NM_000551.3	58	Cgg/gg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164441	47164441	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006263-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			309	61	400	0	ENST00000409792.3:c.1685del	p.Pro562LeufsTer17	p.P562Lfs*17	ENST00000409792	NM_014159.6	562	cCt/ct																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584627	52584628	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006263-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			494	118	568	0	ENST00000394830.3:c.4385dup	p.Gln1463AlafsTer46	p.Q1463Afs*46	ENST00000394830	NM_018313.4	1462	cag/caAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	202	836	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258775	115258775	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	51	437	0	ENST00000369535.4:c.7G>T	p.Glu3Ter	p.E3*	ENST00000369535	NM_002524.4	3	Gag/Tag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097796	8097796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	65	741	0	ENST00000346208.3:c.178G>T	p.Val60Phe	p.V60F	ENST00000346208		60	Gtc/Ttc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38616996	38616996	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	40	471	0	ENST00000299084.4:c.409G>T	p.Ala137Ser	p.A137S	ENST00000299084	NM_152594.2	137	Gca/Tca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883092	37883092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	86	792	1	ENST00000269571.5:c.2995C>T	p.Pro999Ser	p.P999S	ENST00000269571		999	Ccc/Tcc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659835	227659835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	45	509	0	ENST00000305123.5:c.3620C>A	p.Pro1207His	p.P1207H	ENST00000305123	NM_005544.2	1207	cCt/cAt																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42845370	42845370	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	76	695	0	ENST00000398585.3:c.892A>G	p.Ser298Gly	p.S298G	ENST00000398585	NM_001135099.1	298	Agc/Ggc																																																																														
ATR	545	MSKCC	GRCh37	3	142257465	142257465	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	39	358	0	ENST00000350721.4:c.3584C>T	p.Ala1195Val	p.A1195V	ENST00000350721	NM_001184.3	1195	gCt/gTt																																																																														
TP63	8626	MSKCC	GRCh37	3	189585671	189585671	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	69	703	0	ENST00000264731.3:c.932G>C	p.Ser311Thr	p.S311T	ENST00000264731	NM_003722.4	311	aGt/aCt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681074	117681074	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	78	627	0	ENST00000368508.3:c.3546A>T	p.Arg1182Ser	p.R1182S	ENST00000368508	NM_002944.2	1182	agA/agT																																																																														
RXRA	6256	MSKCC	GRCh37	9	137309080	137309080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	106	1066	0	ENST00000481739.1:c.687C>A	p.Asp229Glu	p.D229E	ENST00000481739	NM_002957.4	229	gaC/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	284	783	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	144	355	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	91	218	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220147	5220147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	195	677	0	ENST00000357368.4:c.3568C>T	p.Arg1190Trp	p.R1190W	ENST00000357368	NM_002850.3	1190	Cgg/Tgg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11101923	11101923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	173	795	1	ENST00000344626.4:c.1343G>A	p.Arg448His	p.R448H	ENST00000344626	NM_003072.3	448	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36220965	36220965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	91	506	0	ENST00000222270.7:c.5015G>A	p.Cys1672Tyr	p.C1672Y	ENST00000222270	NM_014727.1	1672	tGc/tAc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273152	198273152	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	361	772	0	ENST00000335508.6:c.1058T>A	p.Leu353Gln	p.L353Q	ENST00000335508	NM_012433.2	353	cTg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245375	153245375	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	347	677	0	ENST00000281708.4:c.1816T>A	p.Trp606Arg	p.W606R	ENST00000281708	NM_033632.3	606	Tgg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	175	756	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	422337	422337	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	70	530	0	ENST00000399788.2:c.2921T>C	p.Leu974Ser	p.L974S	ENST00000399788	NM_001042603.1	974	tTa/tCa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41243950	41243950	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	147	771	1	ENST00000357654.3:c.3598C>T	p.Gln1200Ter	p.Q1200*	ENST00000357654	NM_007294.3	1200	Cag/Tag																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29196000	29196022	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGATCTCCACAGGACCCCCCTGC	GGATCTCCACAGGACCCCCCTGC	ACAA			P-0034250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	119	745	5	ENST00000240100.2:c.580-4_598delinsTTGT		p.X194_splice	ENST00000240100	NM_001394.6	194																																																																															
RUNX1	861	MSKCC	GRCh37	21	36164769	36164769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	39	859	0	ENST00000300305.3:c.1106C>T	p.Ser369Leu	p.S369L	ENST00000300305		369	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	193	539	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	273	673	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	141	328	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	543	945	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																														
APC	324	MSKCC	GRCh37	5	112164565	112164566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	65	260	0	ENST00000257430.4:c.1643dup	p.Leu548PhefsTer12	p.L548Ffs*12	ENST00000257430	NM_000038.5	547	gtt/gTtt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370254	40370254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	194	763	1	ENST00000293328.3:c.1084G>A	p.Val362Met	p.V362M	ENST00000293328	NM_012448.3	362	Gtg/Atg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411832	63411832	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0034092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	455	559	0	ENST00000330258.3:c.1335T>G	p.Tyr445Ter	p.Y445*	ENST00000330258	NM_152424.3	445	taT/taG																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	41	389	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0034140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	73	318	1	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																														
CCND2	894	MSKCC	GRCh37	12	4385324	4385324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	78	248	0	ENST00000261254.3:c.349C>T	p.Pro117Ser	p.P117S	ENST00000261254	NM_001759.3	117	Ccg/Tcg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424114	49424114	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0034140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	29	560	0	ENST00000301067.7:c.13948G>T	p.Glu4650Ter	p.E4650*	ENST00000301067	NM_003482.3	4650	Gag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524373	187524373	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	123	430	0	ENST00000441802.2:c.11307del	p.Phe3769LeufsTer2	p.F3769Lfs*2	ENST00000441802	NM_005245.3	3769	ttT/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0034215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	48	556	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221998	1221998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	63	711	0	ENST00000326873.7:c.913C>T	p.Gln305Ter	p.Q305*	ENST00000326873	NM_000455.4	305	Cag/Tag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131977959	131977959	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	63	530	0	ENST00000265335.6:c.3842A>T	p.Glu1281Val	p.E1281V	ENST00000265335		1281	gAa/gTa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39249806	39249806	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	57	681	0	ENST00000402219.2:c.1763T>A	p.Phe588Tyr	p.F588Y	ENST00000402219	NM_005633.3	588	tTt/tAt																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981748	70981748	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	89	967	1	ENST00000276594.2:c.348C>G	p.Ser116Arg	p.S116R	ENST00000276594	NM_024504.3	116	agC/agG																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557630	95557630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	183	364	0	ENST00000343455.3:c.5437G>A	p.Glu1813Lys	p.E1813K	ENST00000343455	NM_177438.2	1813	Gag/Aag																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566116	95566116	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0034218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	114	226	0	ENST00000343455.3:c.4206+1del		p.X1402_splice	ENST00000343455	NM_177438.2	1402																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	515	608	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TCF3	6929	MSKCC	GRCh37	19	1625601	1625601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	596	787	2	ENST00000344749.5:c.473G>A	p.Arg158Gln	p.R158Q	ENST00000344749	NM_001136139.2	158	cGg/cAg																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442579	52442579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	122	317	0	ENST00000460680.1:c.166C>T	p.Arg56Cys	p.R56C	ENST00000460680	NM_004656.3	56	Cgc/Tgc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600042	10600042	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148641376		P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	208	548	0	ENST00000171111.5:c.1534G>A	p.Val512Ile	p.V512I	ENST00000171111	NM_203500.1	512	Gtc/Atc																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	151	479	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			648	134	597	2	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	127	385	1	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	19	222	0	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																														
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	165	478	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753011	57753012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	98	298	3	ENST00000274289.3:c.1004dupT	p.Leu335PhefsTer12	p.L335Ffs*12	ENST00000274289	NM_006622.3	335	ttg/ttTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			715	188	781	2	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
JAK3	3718	MSKCC	GRCh37	19	17954248	17954248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	162	449	1	ENST00000458235.1:c.361C>T	p.Arg121Cys	p.R121C	ENST00000458235	NM_000215.3	121	Cgc/Tgc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31410918	31410918	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			782	212	664	0	ENST00000344624.3:c.3602T>C	p.Ile1201Thr	p.I1201T	ENST00000344624		1201	aTa/aCa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797157	45797157	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs144079536		P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	199	692	0	ENST00000372115.3:c.1216C>A	p.Leu406Met	p.L406M	ENST00000372115	NM_001048171.1	406	Ctg/Atg																																																																														
ERF	2077	MSKCC	GRCh37	19	42754535	42754535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			759	225	762	0	ENST00000222329.4:c.205G>A	p.Val69Ile	p.V69I	ENST00000222329	NM_006494.2	69	Gtt/Att																																																																														
RB1	5925	MSKCC	GRCh37	13	49050932	49050933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	103	267	0	ENST00000267163.4:c.2622dup	p.Leu875ThrfsTer4	p.L875Tfs*4	ENST00000267163	NM_000321.2	872	-/A																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245318	46245318	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	138	426	0	ENST00000334344.6:c.3416delG	p.Gly1139GlufsTer17	p.G1139Efs*17	ENST00000334344	NM_152641.2	1138	Ggg/gg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913831	32913831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	145	431	0	ENST00000380152.3:c.5339A>G	p.Glu1780Gly	p.E1780G	ENST00000380152		1780	gAa/gGa																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630338	47630355	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAGCCGAAGGAGACGC	TGCAGCCGAAGGAGACGC	ACGG			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	135	507	2	ENST00000233146.2:c.8_25delinsACGG	p.Val3AspfsTer74	p.V3Dfs*74	ENST00000233146	NM_000251.2	3	gTGCAGCCGAAGGAGACGCtg/gACGGtg																																																																														
MSH2	4436	MSKCC	GRCh37	2	47630355	47630355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	135	504	0	ENST00000233146.2:c.25C>G	p.Leu9Val	p.L9V	ENST00000233146	NM_000251.2	9	Ctg/Gtg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807542	1807542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			587	183	673	3	ENST00000260795.2:c.1711C>T	p.Arg571Trp	p.R571W	ENST00000260795		571	Cgg/Tgg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526993	31526993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			626	194	552	0	ENST00000344624.3:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000344624		16	cGa/cAa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89836624	89836624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	193	641	2	ENST00000389301.3:c.2266C>T	p.Arg756Cys	p.R756C	ENST00000389301	NM_000135.2	756	Cgt/Tgt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37882053	37882053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	166	563	1	ENST00000269571.5:c.2819G>A	p.Arg940Gln	p.R940Q	ENST00000269571		940	cGg/cAg																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279646	18279646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141407533		P-0032701-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	160	510	0	ENST00000222254.8:c.1919G>A	p.Arg640Gln	p.R640Q	ENST00000222254	NM_005027.3	640	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27102121	27102121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	347	572	0	ENST00000324856.7:c.5047G>A	p.Glu1683Lys	p.E1683K	ENST00000324856	NM_006015.4	1683	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725046	89725054	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GAAGCTGTA	GAAGCTGTA	-			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	58	205	0	ENST00000371953.3:c.1029_1037del	p.Lys344_Tyr346del	p.K344_Y346del	ENST00000371953	NM_000314.4	343	gtGAAGCTGTAc/gtc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104357006	104357006	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149016373		P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	162	465	1	ENST00000369902.3:c.866G>A	p.Arg289Gln	p.R289Q	ENST00000369902	NM_016169.3	289	cGg/cAg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566153	95566153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	198	472	0	ENST00000343455.3:c.4170C>A	p.Asp1390Glu	p.D1390E	ENST00000343455	NM_177438.2	1390	gaC/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	519	740	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750390	41750390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	135	378	0	ENST00000226382.2:c.238G>C	p.Ala80Pro	p.A80P	ENST00000226382	NM_003924.3	80	Gca/Cca																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004918	150004918	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	262	541	0	ENST00000253339.5:c.1307C>A	p.Ser436Ter	p.S436*	ENST00000253339		436	tCa/tAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970951	21970973	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCCCGCAGCCGCGCGCAGGTA	CCCCCCGCAGCCGCGCGCAGGTA	-			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	568	589	0	ENST00000304494.5:c.385_407del	p.Tyr129HisfsTer5	p.Y129Hfs*5	ENST00000304494	NM_000077.4	129	TACCTGCGCGCGGCTGCGGGGGGc/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970951	21970973	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCCCGCAGCCGCGCGCAGGTA	CCCCCCGCAGCCGCGCGCAGGTA	-			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	568	589	0	ENST00000304494.5:c.385_407del	p.Tyr129HisfsTer5	p.Y129Hfs*5	ENST00000304494	NM_000077.4	129	TACCTGCGCGCGGCTGCGGGGGGc/c																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139815613	139815613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	168	609	0	ENST00000247668.2:c.1084G>T	p.Ala362Ser	p.A362S	ENST00000247668	NM_021138.3	362	Gcc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579442	7579442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	8	652	0	ENST00000269305.4:c.245C>T	p.Pro82Leu	p.P82L	ENST00000269305	NM_001126112.2	82	cCg/cTg																																																																														
TEK	7010	MSKCC	GRCh37	9	27228259	27228259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	99	549	0	ENST00000380036.4:c.3256G>T	p.Ala1086Ser	p.A1086S	ENST00000380036	NM_000459.3	1086	Gcc/Tcc																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519712	137519712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	170	402	0	ENST00000367739.4:c.926C>T	p.Thr309Met	p.T309M	ENST00000367739	NM_000416.2	309	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	209	1013	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0034091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	144	715	0	ENST00000241453.7:c.2955_2956delTC	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	39	1027	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946495	71946495	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0034091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	132	717	0	ENST00000298229.2:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000298229	NM_001567.3	887	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	48881446	48881446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	84	320	0	ENST00000267163.4:c.171del	p.Phe57LeufsTer8	p.F57Lfs*8	ENST00000267163	NM_000321.2	56	gaT/ga																																																																														
MLH1	4292	MSKCC	GRCh37	3	37055934	37055934	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	36	370	0	ENST00000231790.2:c.689A>C	p.Glu230Ala	p.E230A	ENST00000231790	NM_000249.3	230	gAa/gCa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37055941	37055982	+	inframe_deletion	In_Frame_Del	DEL	ATGTGAGGATAAAACCCTAGCCTTCAAAATGAATGGTTACAT	ATGTGAGGATAAAACCCTAGCCTTCAAAATGAATGGTTACAT	-			P-0034091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	34	386	0	ENST00000231790.2:c.698_739del	p.Cys233_Ile246del	p.C233_I246del	ENST00000231790	NM_000249.3	232	ggATGTGAGGATAAAACCCTAGCCTTCAAAATGAATGGTTACATa/gga																																																																														
MED12	9968	MSKCC	GRCh37	X	70362068	70362068	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0034091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	52	503	0	ENST00000374080.3:c.6534A>G	p.Ter2178TrpextTer18	p.*2178Wext*18	ENST00000374080		2178	tgA/tgG																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	67	437	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654643	67654643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	52	755	1	ENST00000264010.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000264010	NM_006565.3	377	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	31	284	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023126	27023126	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	14	84	0	ENST00000324856.7:c.232G>T	p.Glu78Ter	p.E78*	ENST00000324856	NM_006015.4	78	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106561	27106561	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0034097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	113	897	0	ENST00000324856.7:c.6172G>T	p.Glu2058Ter	p.E2058*	ENST00000324856	NM_006015.4	2058	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717665	89717665	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	92	760	0	ENST00000371953.3:c.690del	p.Thr232HisfsTer24	p.T232Hfs*24	ENST00000371953	NM_000314.4	230	ggA/gg																																																																														
ATM	472	MSKCC	GRCh37	11	108202690	108202690	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	39	451	0	ENST00000278616.4:c.7714del	p.Leu2572Ter	p.L2572*	ENST00000278616	NM_000051.3	2572	Ctg/tg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927983	178927988	+	inframe_deletion	In_Frame_Del	DEL	CCATTG	CCATTG	-			P-0034097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	34	458	0	ENST00000263967.3:c.1261_1266del	p.Pro421_Leu422del	p.P421_L422del	ENST00000263967	NM_006218.2	421	CCATTG/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005284-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			189	100	349	0				ENST00000310581	NM_198253.2																																																																																
RHOA	387	MSKCC	GRCh37	3	49412884	49412884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005284-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	230	666	1	ENST00000418115.1:c.139G>A	p.Glu47Lys	p.E47K	ENST00000418115	NM_001664.2	47	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0005284-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	179	567	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004922	150004922	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005284-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	35	545	0	ENST00000253339.5:c.1303C>T	p.Gln435Ter	p.Q435*	ENST00000253339		435	Cag/Tag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652070	36652071	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGG			P-0005284-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	212	714	0	ENST00000244741.5:c.193_195dup	p.Trp65dup	p.W65dup	ENST00000244741	NM_000389.4	65	-/TGG																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984365	201984366	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005284-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	191	591	0	ENST00000359651.3:c.1033dup	p.Val345GlyfsTer126	p.V345Gfs*126	ENST00000359651		344	cgg/cGgg																																																																														
ATRX	546	MSKCC	GRCh37	X	76940008	76940008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032171-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			376	374	679	0	ENST00000373344.5:c.740A>G	p.Asn247Ser	p.N247S	ENST00000373344	NM_000489.3	247	aAc/aGc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120239	70120239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032171-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			646	216	778	1	ENST00000245479.2:c.1241C>T	p.Ser414Leu	p.S414L	ENST00000245479	NM_000346.3	414	tCg/tTg																																																																														
EIF1AX	1964	MSKCC	GRCh37	X	20156713	20156713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032171-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			479	412	643	0	ENST00000379607.5:c.44G>T	p.Gly15Val	p.G15V	ENST00000379607	NM_001412.3	15	gGt/gTt																																																																														
KIT	3815	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0033478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	16	364	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	146	365	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790171	40790171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	134	393	1	ENST00000373198.4:c.2560C>T	p.Arg854Cys	p.R854C	ENST00000373198	NM_133170.3	854	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	256	414	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	391	701	0	ENST00000269305.4:c.403dupT	p.Cys135LeufsTer14	p.C135Lfs*14	ENST00000269305	NM_001126112.2	135	tgc/tTgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717776	89717776	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0033849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	30	316	0	ENST00000371953.3:c.801+1del		p.K267fs	ENST00000371953	NM_000314.4	267	aaG/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443481	49443481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	102	393	1	ENST00000301067.7:c.3890G>A	p.Arg1297His	p.R1297H	ENST00000301067	NM_003482.3	1297	cGt/cAt																																																																														
ATR	545	MSKCC	GRCh37	3	142268442	142268442	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	135	374	0	ENST00000350721.4:c.3050T>C	p.Leu1017Ser	p.L1017S	ENST00000350721	NM_001184.3	1017	tTa/tCa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	95	612	1	ENST00000171111.5:c.556G>A	p.Gly186Ser	p.G186S	ENST00000171111	NM_203500.1	186	Ggc/Agc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242474	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGA	GAATTAAGA	-			P-0033851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	212	325	0	ENST00000275493.2:c.2239_2247delTTAAGAGAA	p.Leu747_Glu749del	p.L747_E749del	ENST00000275493	NM_005228.3	746	GAATTAAGA/-																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041719	14041719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201501958		P-0033851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	53	438	0	ENST00000311895.7:c.2266G>A	p.Val756Met	p.V756M	ENST00000311895	NM_005236.2	756	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577129	7577143	+	inframe_deletion	In_Frame_Del	DEL	AAGCTGTTCCGTCCC	AAGCTGTTCCGTCCC	-			P-0033851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	431	570	0	ENST00000269305.4:c.795_809del	p.Gly266_Phe270del	p.G266_F270del	ENST00000269305	NM_001126112.2	265	ctGGGACGGAACAGCTTt/ctt																																																																														
HGF	3082	MSKCC	GRCh37	7	81335684	81335684	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	58	428	0	ENST00000222390.5:c.1676A>C	p.Glu559Ala	p.E559A	ENST00000222390	NM_000601.4	559	gAg/gCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	479	424	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	275	671	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	101	558	0	ENST00000269305.4:c.80delC	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105679	27105679	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	157	381	0	ENST00000324856.7:c.5290G>T	p.Glu1764Ter	p.E1764*	ENST00000324856	NM_006015.4	1764	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212615399	212615399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	171	383	0	ENST00000342788.4:c.587G>A	p.Arg196His	p.R196H	ENST00000342788	NM_005235.2	196	cGt/cAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	128	376	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	128	376	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	128	376	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371684	55371684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	240	523	0	ENST00000297316.4:c.374G>A	p.Arg125His	p.R125H	ENST00000297316	NM_022454.3	125	cGc/cAc																																																																														
MST1	4485	MSKCC	GRCh37	3	49721547	49721547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	87	460	0	ENST00000449682.2:c.2092G>A	p.Val698Ile	p.V698I	ENST00000449682	NM_020998.3	698	Gta/Ata																																																																														
AR	367	MSKCC	GRCh37	X	66765694	66765694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	474	797	0	ENST00000374690.3:c.706G>A	p.Ala236Thr	p.A236T	ENST00000374690	NM_000044.3	236	Gcc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0033857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	46	597	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578525	7578525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	344	786	0	ENST00000269305.4:c.405C>A	p.Cys135Ter	p.C135*	ENST00000269305	NM_001126112.2	135	tgC/tgA																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128013	30128013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	91	606	0	ENST00000263025.4:c.1116G>C	p.Gln372His	p.Q372H	ENST00000263025	NM_002746.2	372	caG/caC																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87549134	87549134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	87	513	0	ENST00000277120.3:c.1691C>T	p.Ala564Val	p.A564V	ENST00000277120		564	gCc/gTc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435987	56435987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	20	384	1	ENST00000407977.2:c.1150G>A	p.Gly384Ser	p.G384S	ENST00000407977		384	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	153	572	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	349	566	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46205211	46205211	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	445	343	0	ENST00000334344.6:c.295A>T	p.Lys99Ter	p.K99*	ENST00000334344	NM_152641.2	99	Aag/Tag																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602284	10602302	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAGCCGCCGACGGCATA	GGGAGCCGCCGACGGCATA	-			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	339	614	0	ENST00000171111.5:c.1276_1294del	p.Tyr426ThrfsTer26	p.Y426Tfs*26	ENST00000171111	NM_203500.1	426	TATGCCGTCGGCGGCTCCCac/ac																																																																														
AKT2	208	MSKCC	GRCh37	19	40744858	40744865	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTGGAA	GTCTGGAA	CTCT			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	296	530	2	ENST00000392038.2:c.655_662delinsAGAG	p.Phe219ArgfsTer9	p.F219Rfs*9	ENST00000392038	NM_001626.4	219	TTCCAGACc/AGAGc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45868196	45868196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	347	663	0	ENST00000391945.4:c.494G>T	p.Gly165Val	p.G165V	ENST00000391945	NM_000400.3	165	gGg/gTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89456429	89456429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	221	325	0	ENST00000336596.2:c.1605C>G	p.Ile535Met	p.I535M	ENST00000336596	NM_005233.5	535	atC/atG																																																																														
ARAF	369	MSKCC	GRCh37	X	47424216	47424216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	192	472	0	ENST00000377045.4:c.221G>T	p.Trp74Leu	p.W74L	ENST00000377045	NM_001654.4	74	tGg/tTg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179176	123179176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	102	517	0	ENST00000218089.9:c.625G>T	p.Asp209Tyr	p.D209Y	ENST00000218089	NM_001042749.1	209	Gac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	68	330	0				ENST00000310581	NM_198253.2																																																																																
HGF	3082	MSKCC	GRCh37	7	81346592	81346592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	74	309	0	ENST00000222390.5:c.1361C>T	p.Thr454Met	p.T454M	ENST00000222390	NM_000601.4	454	aCg/aTg																																																																														
VHL	7428	MSKCC	GRCh37	3	10183692	10183693	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	77	535	0	ENST00000256474.2:c.163dup	p.Glu55GlyfsTer77	p.E55Gfs*77	ENST00000256474	NM_000551.3	54	atg/atGg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942114	71942114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	107	627	0	ENST00000298229.2:c.1378G>A	p.Val460Met	p.V460M	ENST00000298229	NM_001567.3	460	Gtg/Atg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44515623	44515625	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0033887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	149	624	0	ENST00000291552.4:c.271_273del	p.Glu91del	p.E91del	ENST00000291552	NM_006758.2	91	GAG/-																																																																														
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	20	291	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8097859	8097859	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	17	292	0	ENST00000346208.3:c.241G>T	p.Gly81Trp	p.G81W	ENST00000346208		81	Ggg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	339	706	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430953	181430953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	417	652	1	ENST00000325404.1:c.805G>T	p.Asp269Tyr	p.D269Y	ENST00000325404	NM_003106.3	269	Gac/Tac																																																																														
NF1	4763	MSKCC	GRCh37	17	29554613	29554613	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	42	247	0	ENST00000358273.4:c.2398G>T	p.Glu800Ter	p.E800*	ENST00000358273	NM_001042492.2	800	Gaa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974816	15974816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	49	473	0	ENST00000268712.3:c.4059G>C	p.Glu1353Asp	p.E1353D	ENST00000268712	NM_006311.3	1353	gaG/gaC																																																																														
NF1	4763	MSKCC	GRCh37	17	29684328	29684328	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	226	573	0	ENST00000358273.4:c.7912del	p.Ile2638PhefsTer6	p.I2638Ffs*6	ENST00000358273	NM_001042492.2	2637	cgA/cg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15299114	15299114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	292	662	0	ENST00000263388.2:c.1424G>C	p.Ser475Thr	p.S475T	ENST00000263388	NM_000435.2	475	aGt/aCt																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136873183	136873183	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	67	376	0	ENST00000241393.3:c.315del	p.Asn106ThrfsTer62	p.N106Tfs*62	ENST00000241393	NM_003467.2	105	ggG/gg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728665	190728665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	59	394	0	ENST00000441310.2:c.2053C>G	p.Gln685Glu	p.Q685E	ENST00000441310	NM_000534.4	685	Caa/Gaa																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22153387	22153387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	34	412	0	ENST00000215832.6:c.523G>T	p.Asp175Tyr	p.D175Y	ENST00000215832	NM_002745.4	175	Gat/Tat																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524316	176524316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	1413	691	0	ENST00000292408.4:c.2177G>T	p.Trp726Leu	p.W726L	ENST00000292408	NM_213647.1	726	tGg/tTg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2958189	2958189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	104	531	0	ENST00000396946.4:c.2543G>A	p.Arg848His	p.R848H	ENST00000396946	NM_032415.4	848	cGc/cAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410941	63410941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	132	628	0	ENST00000330258.3:c.2226G>T	p.Arg742Ser	p.R742S	ENST00000330258	NM_152424.3	742	agG/agT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	154	538	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981516	70981516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	125	897	1	ENST00000276594.2:c.580C>T	p.Arg194Trp	p.R194W	ENST00000276594	NM_024504.3	194	Cgg/Tgg																																																																														
MET	4233	MSKCC	GRCh37	7	116411619	116411622	+	frameshift_variant	Frame_Shift_Del	DEL	GATT	GATT	-			P-0033896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	90	520	0	ENST00000397752.3:c.2803_2806del	p.Ile935LeufsTer20	p.I935Lfs*20	ENST00000397752	NM_000245.2	933	gGATTg/gg																																																																														
MET	4233	MSKCC	GRCh37	7	116411872	116411891	+	intron_variant	Intron	DEL	TAACAAGCTCTTTCTTTCTC	TAACAAGCTCTTTCTTTCTC	-			P-0033896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	270	965	0	ENST00000397752.3:c.2888-30_2888-11del		p.*963*	ENST00000397752	NM_000245.2	963																																																																															
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	19	518	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11186807	11186807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	29	451	0	ENST00000361445.4:c.6398G>A	p.Cys2133Tyr	p.C2133Y	ENST00000361445	NM_004958.3	2133	tGc/tAc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859565	151859565	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0033902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	35	498	0	ENST00000262189.6:c.11097T>G	p.Tyr3699Ter	p.Y3699*	ENST00000262189	NM_170606.2	3699	taT/taG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	154	348	0				ENST00000310581	NM_198253.2																																																																																
BRCA2	675	MSKCC	GRCh37	13	32912874	32912874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	318	434	0	ENST00000380152.3:c.4382C>T	p.Ser1461Phe	p.S1461F	ENST00000380152		1461	tCc/tTc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	460	729	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295824	212295824	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	259	487	0	ENST00000342788.4:c.2489G>A	p.Gly830Glu	p.G830E	ENST00000342788	NM_005235.2	830	gGa/gAa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18691241	18691241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	185	382	0	ENST00000266497.5:c.3352G>A	p.Glu1118Lys	p.E1118K	ENST00000266497		1118	Gaa/Aaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602625	10602625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	340	728	1	ENST00000171111.5:c.953C>T	p.Pro318Leu	p.P318L	ENST00000171111	NM_203500.1	318	cCc/cTc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117638350	117638350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	266	609	1	ENST00000368508.3:c.6091G>A	p.Gly2031Arg	p.G2031R	ENST00000368508	NM_002944.2	2031	Gga/Aga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862866	9862866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	330	704	0	ENST00000330684.3:c.2437G>A	p.Asp813Asn	p.D813N	ENST00000330684	NM_001134407.1	813	Gac/Aac																																																																														
MGA	23269	MSKCC	GRCh37	15	42028504	42028504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	340	534	2	ENST00000219905.7:c.4042C>T	p.Arg1348Trp	p.R1348W	ENST00000219905	NM_001164273.1	1348	Cgg/Tgg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18658353	18658353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	331	548	0	ENST00000266497.5:c.3158G>A	p.Gly1053Glu	p.G1053E	ENST00000266497		1053	gGa/gAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29670154	29670154	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	266	443	0	ENST00000358273.4:c.7189+1G>A		p.X2397_splice	ENST00000358273	NM_001042492.2	2397																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36212236	36212236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	372	740	0	ENST00000222270.7:c.1987G>A	p.Glu663Lys	p.E663K	ENST00000222270	NM_014727.1	663	Gaa/Aaa																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494644	2494644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	286	655	0	ENST00000355716.4:c.784C>T	p.Pro262Ser	p.P262S	ENST00000355716	NM_003820.2	262	Ccg/Tcg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11186825	11186825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	256	465	0	ENST00000361445.4:c.6380C>T	p.Ser2127Phe	p.S2127F	ENST00000361445	NM_004958.3	2127	tCc/tTc																																																																														
SDHC	6391	MSKCC	GRCh37	1	161293411	161293411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	354	595	0	ENST00000367975.2:c.28G>A	p.Gly10Ser	p.G10S	ENST00000367975	NM_003001.3	10	Ggt/Agt																																																																														
BIRC3	330	MSKCC	GRCh37	11	102199635	102199635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	282	350	0	ENST00000263464.3:c.1040C>T	p.Ser347Phe	p.S347F	ENST00000263464	NM_001165.4	347	tCc/tTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350186	89350186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	528	932	0	ENST00000301030.4:c.2764G>A	p.Glu922Lys	p.E922K	ENST00000301030	NM_001256183.1	922	Gag/Aag																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761145	59761145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	411	737	1	ENST00000259008.2:c.3262C>T	p.His1088Tyr	p.H1088Y	ENST00000259008	NM_032043.2	1088	Cat/Tat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144827	11144828	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	262	614	1	ENST00000344626.4:c.3902_3903delinsTT	p.Thr1301Ile	p.T1301I	ENST00000344626	NM_003072.3	1301	aCC/aTT																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15291630	15291630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	361	828	0	ENST00000263388.2:c.3004G>A	p.Asp1002Asn	p.D1002N	ENST00000263388	NM_000435.2	1002	Gat/Aat																																																																														
ALK	238	MSKCC	GRCh37	2	29606651	29606651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	318	545	0	ENST00000389048.3:c.1229G>A	p.Gly410Glu	p.G410E	ENST00000389048	NM_004304.4	410	gGa/gAa																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881596	111881597	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	388	730	0	ENST00000393256.3:c.274_275delinsAT	p.Ser92Ile	p.S92I	ENST00000393256	NM_006538.4	92	TCc/ATc																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198274557	198274557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	359	669	1	ENST00000335508.6:c.841C>T	p.His281Tyr	p.H281Y	ENST00000335508	NM_012433.2	281	Cat/Tat																																																																														
BARD1	580	MSKCC	GRCh37	2	215645916	215645916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	342	759	0	ENST00000260947.4:c.682G>A	p.Glu228Lys	p.E228K	ENST00000260947	NM_000465.2	228	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021322	31021322	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	254	535	0	ENST00000375687.4:c.1321T>A	p.Ser441Thr	p.S441T	ENST00000375687	NM_015338.5	441	Tct/Act																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31021340	31021340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	245	513	0	ENST00000375687.4:c.1339C>T	p.Pro447Ser	p.P447S	ENST00000375687	NM_015338.5	447	Ccc/Tcc																																																																														
SRC	6714	MSKCC	GRCh37	20	36031230	36031231	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	280	641	1	ENST00000358208.4:c.1349_1350delinsTT	p.Ser450Phe	p.S450F	ENST00000358208		450	tCC/tTT																																																																														
RAF1	5894	MSKCC	GRCh37	3	12650401	12650401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	244	419	1	ENST00000251849.4:c.445C>T	p.Leu149Phe	p.L149F	ENST00000251849	NM_002880.3	149	Ctt/Ttt																																																																														
SDHA	6389	MSKCC	GRCh37	5	218534	218534	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	29	88	0	ENST00000264932.6:c.63+1G>C		p.X21_splice	ENST00000264932	NM_004168.2	21																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31322304	31322304	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	234	472	0	ENST00000412585.2:c.1046-1G>T		p.X349_splice	ENST00000412585	NM_005514.6	349																																																																															
ROS1	6098	MSKCC	GRCh37	6	117609849	117609849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	410	700	0	ENST00000368508.3:c.6850G>A	p.Gly2284Ser	p.G2284S	ENST00000368508	NM_002944.2	2284	Ggt/Agt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505561	157505561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	132	177	0	ENST00000346085.5:c.3542C>T	p.Pro1181Leu	p.P1181L	ENST00000346085	NM_020732.3	1181	cCa/cTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151853389	151853389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	296	515	0	ENST00000262189.6:c.11713C>T	p.Pro3905Ser	p.P3905S	ENST00000262189	NM_170606.2	3905	Cct/Tct																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128322042	128322042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	281	550	0	ENST00000265960.3:c.718G>A	p.Glu240Lys	p.E240K	ENST00000265960	NM_001006617.1	240	Gag/Aag																																																																														
BTK	695	MSKCC	GRCh37	X	100615599	100615599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	365	337	0	ENST00000308731.7:c.733G>A	p.Glu245Lys	p.E245K	ENST00000308731	NM_000061.2	245	Gag/Aag																																																																														
SDHA	6389	MSKCC	GRCh37	5	236570	236570	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	17	30	0	ENST00000264932.6:c.1288C>T	p.Gln430Ter	p.Q430*	ENST00000264932	NM_004168.2	430	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	115	302	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	105	542	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	110	481	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443536	49443536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	90	437	0	ENST00000301067.7:c.3835del	p.Ile1279SerfsTer51	p.I1279Sfs*51	ENST00000301067	NM_003482.3	1279	Atc/tc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562387	95562387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	77	317	0	ENST00000343455.3:c.4870G>T	p.Ala1624Ser	p.A1624S	ENST00000343455	NM_177438.2	1624	Gct/Tct																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48573556	48573556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	28	192	0	ENST00000342988.3:c.140T>C	p.Leu47Pro	p.L47P	ENST00000342988	NM_005359.5	47	cTg/cCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0034163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	148	663	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134512	30134512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	54	316	0	ENST00000263025.4:c.19C>A	p.Gln7Lys	p.Q7K	ENST00000263025	NM_002746.2	7	Cag/Aag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	196	723	0	ENST00000326873.7:c.843delG	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610358	10610358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	232	952	2	ENST00000171111.5:c.352C>T	p.Gln118Ter	p.Q118*	ENST00000171111	NM_203500.1	118	Cag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390995	89390995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	116	671	0	ENST00000336596.2:c.1061G>T	p.Arg354Leu	p.R354L	ENST00000336596	NM_005233.5	354	cGg/cTg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	60	671	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	125	284	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0034185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	222	486	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0034185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	360	512	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827589	72827589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	285	621	26	ENST00000268489.5:c.8992C>T	p.Arg2998Trp	p.R2998W	ENST00000268489	NM_006885.3	2998	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087894	27087907	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACCCAGTGGCC	GCCACCCAGTGGCC	-			P-0034185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	294	588	1	ENST00000324856.7:c.2181_2194del	p.Pro728ValfsTer84	p.P728Vfs*84	ENST00000324856	NM_006015.4	727	cgGCCACCCAGTGGCCag/cgag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0034192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	344	573	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0034192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	172	446	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023994-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			209	101	266	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023994-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			209	101	266	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023994-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			276	88	304	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023994-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			483	86	369	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023994-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			209	101	266	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
RHOA	387	MSKCC	GRCh37	3	49405968	49405968	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023994-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			441	94	359	0	ENST00000418115.1:c.170T>C	p.Leu57Ser	p.L57S	ENST00000418115	NM_001664.2	57	tTg/tCg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873687	151873688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGA			P-0023994-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			525	213	445	0	ENST00000262189.6:c.8847_8850dup	p.Val2951SerfsTer18	p.V2951Sfs*18	ENST00000262189	NM_170606.2	2950	-/TCAT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878867	151878868	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0023994-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			678	150	480	0	ENST00000262189.6:c.6077dup	p.Tyr2026Ter	p.Y2026*	ENST00000262189	NM_170606.2	2026	tat/taAt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111462	8111463	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0023994-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			588	128	417	0	ENST00000346208.3:c.949_951dup	p.Cys317dup	p.C317dup	ENST00000346208		317	-/TGT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	68	327	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TET1	80312	MSKCC	GRCh37	10	70406064	70406064	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	183	543	1	ENST00000373644.4:c.3578C>A	p.Ser1193Ter	p.S1193*	ENST00000373644	NM_030625.2	1193	tCg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	141	644	1	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	42	218	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	96	309	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793710	89793710	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	101	319	0	ENST00000336032.3:c.779A>C	p.Lys260Thr	p.K260T	ENST00000336032	NM_006813.2	260	aAa/aCa																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	49	179	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911181	32911181	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	24	405	0	ENST00000380152.3:c.2689G>T	p.Glu897Ter	p.E897*	ENST00000380152		897	Gaa/Taa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106520000	106520000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	64	231	0	ENST00000359195.3:c.2428C>A	p.Pro810Thr	p.P810T	ENST00000359195	NM_002649.2	810	Cca/Aca																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913155	32913155	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	93	382	0	ENST00000380152.3:c.4663G>T	p.Glu1555Ter	p.E1555*	ENST00000380152		1555	Gaa/Taa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30681733	30681733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	146	516	0	ENST00000376406.3:c.364C>A	p.Leu122Ile	p.L122I	ENST00000376406	NM_014641.2	122	Ctc/Atc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332849	152332849	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	143	510	0	ENST00000206249.3:c.1155G>T	p.Glu385Asp	p.E385D	ENST00000206249	NM_000125.3	385	gaG/gaT																																																																														
SPEN	23013	MSKCC	GRCh37	1	16247393	16247393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	55	215	0	ENST00000375759.3:c.1664C>T	p.Ala555Val	p.A555V	ENST00000375759	NM_015001.2	555	gCc/gTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	134	670	3	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910435	32910435	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	95	358	0	ENST00000380152.3:c.1943C>A	p.Ser648Ter	p.S648*	ENST00000380152		648	tCa/tAa																																																																														
ATM	472	MSKCC	GRCh37	11	108205711	108205711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	58	287	0	ENST00000278616.4:c.8026G>T	p.Glu2676Ter	p.E2676*	ENST00000278616	NM_000051.3	2676	Gaa/Taa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66231757	66231757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	39	397	0	ENST00000273854.3:c.1943G>T	p.Arg648Ile	p.R648I	ENST00000273854	NM_004439.5	648	aGa/aTa																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739790	41739790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	44	595	0	ENST00000242208.4:c.183C>A	p.His61Gln	p.H61Q	ENST00000242208	NM_002192.2	61	caC/caA																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922867	39922867	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	142	278	0	ENST00000378444.4:c.3841G>T	p.Glu1281Ter	p.E1281*	ENST00000378444	NM_001123385.1	1281	Gaa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108150330	108150330	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	103	343	0	ENST00000278616.4:c.3397G>T	p.Glu1133Ter	p.E1133*	ENST00000278616	NM_000051.3	1133	Gaa/Taa																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56176614	56176614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	111	336	0	ENST00000399503.3:c.2164G>T	p.Glu722Ter	p.E722*	ENST00000399503	NM_005921.1	722	Gaa/Taa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610715	52610715	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	27	297	0	ENST00000394830.3:c.3459-1G>T		p.X1153_splice	ENST00000394830	NM_018313.4	1153																																																																															
ARID2	196528	MSKCC	GRCh37	12	46246158	46246158	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	25	390	0	ENST00000334344.6:c.4252G>T	p.Gly1418Ter	p.G1418*	ENST00000334344	NM_152641.2	1418	Gga/Tga																																																																														
BRCA2	675	MSKCC	GRCh37	13	32915295	32915295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	140	606	0	ENST00000380152.3:c.6803G>T	p.Arg2268Ile	p.R2268I	ENST00000380152		2268	aGa/aTa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180056420	180056420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	81	473	0	ENST00000261937.6:c.824G>A	p.Arg275Gln	p.R275Q	ENST00000261937	NM_182925.4	275	cGg/cAg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16259479	16259480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	27	424	1	ENST00000375759.3:c.6750dupC	p.Ala2251ArgfsTer10	p.A2251Rfs*10	ENST00000375759	NM_015001.2	2248	-/C																																																																														
JAK1	3716	MSKCC	GRCh37	1	65304224	65304224	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	144	422	0	ENST00000342505.4:c.2891T>G	p.Leu964Arg	p.L964R	ENST00000342505	NM_002227.2	964	cTt/cGt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162743292	162743292	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	96	324	0	ENST00000367921.3:c.1762T>A	p.Phe588Ile	p.F588I	ENST00000367921	NM_006182.2	588	Ttc/Atc																																																																														
NUF2	83540	MSKCC	GRCh37	1	163317623	163317623	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	80	221	0	ENST00000271452.3:c.1019C>A	p.Ser340Ter	p.S340*	ENST00000271452	NM_145697.2	340	tCg/tAg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193202172	193202172	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	104	268	0	ENST00000367435.3:c.1204G>T	p.Glu402Ter	p.E402*	ENST00000367435	NM_024529.4	402	Gaa/Taa																																																																														
PARP1	142	MSKCC	GRCh37	1	226576395	226576395	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	51	528	0	ENST00000366794.5:c.679G>T	p.Glu227Ter	p.E227*	ENST00000366794	NM_001618.3	227	Gaa/Taa																																																																														
FH	2271	MSKCC	GRCh37	1	241680556	241680556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	136	577	0	ENST00000366560.3:c.193G>T	p.Asp65Tyr	p.D65Y	ENST00000366560	NM_000143.3	65	Gat/Tat																																																																														
PGR	5241	MSKCC	GRCh37	11	100912704	100912704	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	36	447	0	ENST00000325455.5:c.2618T>G	p.Leu873Arg	p.L873R	ENST00000325455	NM_001202474.3	873	cTt/cGt																																																																														
ATM	472	MSKCC	GRCh37	11	108236180	108236180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	38	602	0	ENST00000278616.4:c.9116C>A	p.Ala3039Asp	p.A3039D	ENST00000278616	NM_000051.3	3039	gCc/gAc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505413	125505413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	24	293	2	ENST00000428830.2:c.703G>T	p.Asp235Tyr	p.D235Y	ENST00000428830	NM_001114121.2	235	Gat/Tat																																																																														
KDM5A	5927	MSKCC	GRCh37	12	417122	417122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	124	395	0	ENST00000399788.2:c.3428C>A	p.Ser1143Tyr	p.S1143Y	ENST00000399788	NM_001042603.1	1143	tCt/tAt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641509	18641509	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	74	391	0	ENST00000266497.5:c.2508A>C	p.Lys836Asn	p.K836N	ENST00000266497		836	aaA/aaC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49435178	49435178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	24	414	0	ENST00000301067.7:c.6375C>A	p.Phe2125Leu	p.F2125L	ENST00000301067	NM_003482.3	2125	ttC/ttA																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437468	49437468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	126	565	0	ENST00000301067.7:c.5417C>A	p.Ala1806Asp	p.A1806D	ENST00000301067	NM_003482.3	1806	gCc/gAc																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233086	69233086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	69	310	0	ENST00000462284.1:c.951G>T	p.Met317Ile	p.M317I	ENST00000462284	NM_002392.5	317	atG/atT																																																																														
MSI1	4440	MSKCC	GRCh37	12	120785302	120785302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	71	541	0	ENST00000257552.2:c.806C>A	p.Ala269Asp	p.A269D	ENST00000257552	NM_002442.3	269	gCc/gAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133252691	133252691	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	26	475	0	ENST00000320574.5:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000320574	NM_006231.2	337	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48955403	48955403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	77	295	0	ENST00000267163.4:c.1519G>T	p.Asp507Tyr	p.D507Y	ENST00000267163	NM_000321.2	507	Gat/Tat																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068922	30068922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	126	689	0	ENST00000331968.5:c.2007G>T	p.Met669Ile	p.M669I	ENST00000331968	NM_002742.2	669	atG/atT																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30100166	30100166	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	202	562	0	ENST00000331968.5:c.1454A>T	p.Asn485Ile	p.N485I	ENST00000331968	NM_002742.2	485	aAt/aTt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562226	95562226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	152	371	0	ENST00000343455.3:c.5031C>A	p.Phe1677Leu	p.F1677L	ENST00000343455	NM_177438.2	1677	ttC/ttA																																																																														
MGA	23269	MSKCC	GRCh37	15	41999995	41999995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	78	658	0	ENST00000219905.7:c.2258C>A	p.Pro753His	p.P753H	ENST00000219905	NM_001164273.1	753	cCt/cAt																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482814	67482814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	137	628	1	ENST00000327367.4:c.1218G>T	p.Trp406Cys	p.W406C	ENST00000327367	NM_005902.3	406	tgG/tgT																																																																														
AXIN1	8312	MSKCC	GRCh37	16	354334	354334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	36	692	0	ENST00000262320.3:c.1224G>T	p.Lys408Asn	p.K408N	ENST00000262320	NM_003502.3	408	aaG/aaT																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647697	3647697	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	108	654	0	ENST00000294008.3:c.1367-1G>T		p.X456_splice	ENST00000294008	NM_032444.2	456																																																																															
PALB2	79728	MSKCC	GRCh37	16	23641575	23641575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	38	628	0	ENST00000261584.4:c.1900C>A	p.Pro634Thr	p.P634T	ENST00000261584	NM_024675.3	634	Cca/Aca																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645377	67645377	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	115	376	0	ENST00000264010.4:c.642T>G	p.Tyr214Ter	p.Y214*	ENST00000264010	NM_006565.3	214	taT/taG																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650662	67650662	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	31	453	0	ENST00000264010.4:c.967A>G	p.Lys323Glu	p.K323E	ENST00000264010	NM_006565.3	323	Aag/Gag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671652	67671652	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	50	473	0	ENST00000264010.4:c.2061A>T	p.Glu687Asp	p.E687D	ENST00000264010	NM_006565.3	687	gaA/gaT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346627	89346627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	66	452	0	ENST00000301030.4:c.6323G>T	p.Gly2108Val	p.G2108V	ENST00000301030	NM_001256183.1	2108	gGc/gTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348410	89348410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	211	765	1	ENST00000301030.4:c.4540C>A	p.Leu1514Ile	p.L1514I	ENST00000301030	NM_001256183.1	1514	Ctc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7573997	7573997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	41	686	0	ENST00000269305.4:c.1030C>A	p.Leu344Met	p.L344M	ENST00000269305	NM_001126112.2	344	Ctg/Atg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961030	15961030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	136	373	0	ENST00000268712.3:c.6190G>T	p.Ala2064Ser	p.A2064S	ENST00000268712	NM_006311.3	2064	Gct/Tct																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40461433	40461433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	58	696	0	ENST00000345506.4:c.2153C>A	p.Ala718Asp	p.A718D	ENST00000345506	NM_003152.3	718	gCc/gAc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40477068	40477068	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	93	440	2	ENST00000264657.5:c.1377G>T	p.Leu459Phe	p.L459F	ENST00000264657	NM_139276.2	459	ttG/ttT																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59885860	59885860	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	136	480	0	ENST00000259008.2:c.886G>T	p.Glu296Ter	p.E296*	ENST00000259008	NM_032043.2	296	Gag/Tag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63526218	63526218	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	153	465	0	ENST00000307078.5:c.2408A>G	p.Tyr803Cys	p.Y803C	ENST00000307078	NM_004655.3	803	tAt/tGt																																																																														
PMAIP1	5366	MSKCC	GRCh37	18	57569903	57569903	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	57	258	0	ENST00000316660.6:c.83A>G	p.Gln28Arg	p.Q28R	ENST00000316660	NM_021127.2	28	cAa/cGa																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4097329	4097329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	27	451	0	ENST00000262948.5:c.932A>G	p.Asp311Gly	p.D311G	ENST00000262948	NM_030662.3	311	gAt/gGt																																																																														
CARM1	10498	MSKCC	GRCh37	19	11015629	11015629	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	108	432	0	ENST00000327064.4:c.223G>T	p.Glu75Ter	p.E75*	ENST00000327064	NM_199141.1	75	Gaa/Taa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39237792	39237792	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	167	464	1	ENST00000402219.2:c.2443G>T	p.Glu815Ter	p.E815*	ENST00000402219	NM_005633.3	815	Gaa/Taa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39241033	39241033	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	137	483	0	ENST00000402219.2:c.2038G>T	p.Glu680Ter	p.E680*	ENST00000402219	NM_005633.3	680	Gaa/Taa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39250011	39250011	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	145	597	0	ENST00000402219.2:c.1558G>C	p.Asp520His	p.D520H	ENST00000402219	NM_005633.3	520	Gat/Cat																																																																														
CXCR4	7852	MSKCC	GRCh37	2	136872974	136872974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	84	381	0	ENST00000241393.3:c.524C>A	p.Ala175Asp	p.A175D	ENST00000241393	NM_003467.2	175	gCc/gAc																																																																														
ACVR1	90	MSKCC	GRCh37	2	158595035	158595035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	145	425	0	ENST00000263640.3:c.1312G>T	p.Asp438Tyr	p.D438Y	ENST00000263640	NM_001105.4	438	Gac/Tac																																																																														
CASP8	841	MSKCC	GRCh37	2	202141693	202141693	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	27	264	0	ENST00000358485.4:c.979+2T>C		p.X327_splice	ENST00000358485	NM_001080125.1	327																																																																															
ERBB4	2066	MSKCC	GRCh37	2	212570050	212570050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	97	445	0	ENST00000342788.4:c.1191G>T	p.Glu397Asp	p.E397D	ENST00000342788	NM_005235.2	397	gaG/gaT																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812165	212812165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	59	294	0	ENST00000342788.4:c.411G>T	p.Lys137Asn	p.K137N	ENST00000342788	NM_005235.2	137	aaG/aaT																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660757	227660757	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	93	547	0	ENST00000305123.5:c.2698G>T	p.Glu900Ter	p.E900*	ENST00000305123	NM_005544.2	900	Gaa/Taa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31020757	31020757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	41	216	0	ENST00000375687.4:c.1054G>T	p.Glu352Ter	p.E352*	ENST00000375687	NM_015338.5	352	Gaa/Taa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31020765	31020765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	55	205	0	ENST00000375687.4:c.1062C>A	p.Phe354Leu	p.F354L	ENST00000375687	NM_015338.5	354	ttC/ttA																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164731	36164731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	151	617	0	ENST00000300305.3:c.1144C>T	p.Pro382Ser	p.P382S	ENST00000300305		382	Ccg/Tcg																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288524	21288524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	134	574	2	ENST00000354336.3:c.769G>T	p.Ala257Ser	p.A257S	ENST00000354336	NM_005207.3	257	Gca/Tca																																																																														
EP300	2033	MSKCC	GRCh37	22	41523732	41523732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	42	662	0	ENST00000263253.7:c.1148A>G	p.Gln383Arg	p.Q383R	ENST00000263253	NM_001429.3	383	cAg/cGg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12626671	12626671	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	126	519	0	ENST00000251849.4:c.1618G>T	p.Glu540Ter	p.E540*	ENST00000251849	NM_002880.3	540	Gaa/Taa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49924769	49924769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	152	637	0	ENST00000296474.3:c.4174C>A	p.Pro1392Thr	p.P1392T	ENST00000296474	NM_002447.2	1392	Cca/Aca																																																																														
MITF	4286	MSKCC	GRCh37	3	69987202	69987202	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	89	345	0	ENST00000352241.4:c.582+2T>A		p.X194_splice	ENST00000352241	NM_198159.2	194																																																																															
SHQ1	55164	MSKCC	GRCh37	3	72799734	72799734	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	174	628	0	ENST00000325599.8:c.1435G>T	p.Glu479Ter	p.E479*	ENST00000325599	NM_018130.2	479	Gaa/Taa																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72891457	72891457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	143	466	0	ENST00000325599.8:c.305C>T	p.Thr102Ile	p.T102I	ENST00000325599	NM_018130.2	102	aCa/aTa																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73047278	73047278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	143	439	0	ENST00000356692.5:c.85C>A	p.Leu29Ile	p.L29I	ENST00000356692		29	Ctt/Att																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138431122	138431122	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	147	352	0	ENST00000289153.2:c.1327A>C	p.Thr443Pro	p.T443P	ENST00000289153	NM_006219.2	443	Acg/Ccg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664867	138664867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	15	99	0	ENST00000330315.3:c.698C>A	p.Ala233Asp	p.A233D	ENST00000330315	NM_023067.3	233	gCc/gAc																																																																														
ATR	545	MSKCC	GRCh37	3	142215241	142215241	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	27	439	0	ENST00000350721.4:c.5860G>T	p.Glu1954Ter	p.E1954*	ENST00000350721	NM_001184.3	1954	Gaa/Taa																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430749	181430749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	46	590	0	ENST00000325404.1:c.601G>T	p.Asp201Tyr	p.D201Y	ENST00000325404	NM_003106.3	201	Gac/Tac																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186504340	186504340	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	18	231	0	ENST00000323963.5:c.677A>C	p.Lys226Thr	p.K226T	ENST00000323963		226	aAa/aCa																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186506949	186506949	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	19	270	0	ENST00000323963.5:c.1115T>C	p.Val372Ala	p.V372A	ENST00000323963		372	gTg/gCg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806182	1806182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	140	655	0	ENST00000260795.2:c.1201C>A	p.Pro401Thr	p.P401T	ENST00000260795		401	Ccc/Acc																																																																														
KDR	3791	MSKCC	GRCh37	4	55971117	55971117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	136	593	0	ENST00000263923.4:c.1680G>T	p.Gln560His	p.Q560H	ENST00000263923	NM_002253.2	560	caG/caT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187509932	187509932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	105	381	3	ENST00000441802.2:c.13581C>A	p.Phe4527Leu	p.F4527L	ENST00000441802	NM_005245.3	4527	ttC/ttA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524798	187524798	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	87	679	0	ENST00000441802.2:c.10882A>G	p.Thr3628Ala	p.T3628A	ENST00000441802	NM_005245.3	3628	Aca/Gca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38943046	38943046	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	40	279	0	ENST00000357387.3:c.4941T>A	p.Phe1647Leu	p.F1647L	ENST00000357387	NM_152756.3	1647	ttT/ttA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38944618	38944618	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	37	426	0	ENST00000357387.3:c.4843G>T	p.Glu1615Ter	p.E1615*	ENST00000357387	NM_152756.3	1615	Gaa/Taa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945785	38945785	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	17	296	0	ENST00000357387.3:c.4441C>A	p.His1481Asn	p.H1481N	ENST00000357387	NM_152756.3	1481	Cac/Aac																																																																														
PLK2	10769	MSKCC	GRCh37	5	57752361	57752361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	99	422	0	ENST00000274289.3:c.1212G>T	p.Lys404Asn	p.K404N	ENST00000274289	NM_006622.3	404	aaG/aaT																																																																														
MSH3	4437	MSKCC	GRCh37	5	80083394	80083394	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	56	598	1	ENST00000265081.6:c.2446G>T	p.Glu816Ter	p.E816*	ENST00000265081	NM_002439.4	816	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112157678	112157678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	29	431	0	ENST00000257430.4:c.1398G>T	p.Met466Ile	p.M466I	ENST00000257430	NM_000038.5	466	atG/atT																																																																														
APC	324	MSKCC	GRCh37	5	112175806	112175806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	69	278	0	ENST00000257430.4:c.4515C>A	p.Ser1505Arg	p.S1505R	ENST00000257430	NM_000038.5	1505	agC/agA																																																																														
NSD1	64324	MSKCC	GRCh37	5	176638539	176638539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	140	621	0	ENST00000439151.2:c.3139G>T	p.Ala1047Ser	p.A1047S	ENST00000439151	NM_022455.4	1047	Gcc/Tcc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721984	176721984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	38	470	0	ENST00000439151.2:c.7615C>A	p.Leu2539Ile	p.L2539I	ENST00000439151	NM_022455.4	2539	Ctt/Att																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190323	32190323	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	51	445	0	ENST00000375023.3:c.416G>C	p.Gly139Ala	p.G139A	ENST00000375023	NM_004557.3	139	gGc/gCc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798492	32798492	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	169	720	0	ENST00000374899.4:c.1364C>A	p.Ser455Ter	p.S455*	ENST00000374899	NM_018833.2	455	tCa/tAa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32800496	32800496	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	160	784	0	ENST00000374899.4:c.1051G>T	p.Glu351Ter	p.E351*	ENST00000374899	NM_018833.2	351	Gaa/Taa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120887	94120887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	61	389	0	ENST00000369303.4:c.164G>T	p.Trp55Leu	p.W55L	ENST00000369303	NM_004440.3	55	tGg/tTg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555065	106555065	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	154	482	0	ENST00000369096.4:c.2182G>T	p.Glu728Ter	p.E728*	ENST00000369096	NM_001198.3	728	Gaa/Taa																																																																														
PRDM1	639	MSKCC	GRCh37	6	106555216	106555216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	96	466	0	ENST00000369096.4:c.2333G>T	p.Arg778Ile	p.R778I	ENST00000369096	NM_001198.3	778	aGa/aTa																																																																														
SESN1	27244	MSKCC	GRCh37	6	109415129	109415129	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	186	855	0	ENST00000436639.2:c.148T>A	p.Ser50Thr	p.S50T	ENST00000436639	NM_014454.2	50	Tca/Aca																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001072	150001072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	106	474	0	ENST00000253339.5:c.2532G>T	p.Leu844Phe	p.L844F	ENST00000253339		844	ttG/ttT																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004238	150004238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	109	350	0	ENST00000253339.5:c.1987C>A	p.Gln663Lys	p.Q663K	ENST00000253339		663	Caa/Aaa																																																																														
LATS1	9113	MSKCC	GRCh37	6	150022982	150022982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	60	642	0	ENST00000253339.5:c.281C>A	p.Ser94Tyr	p.S94Y	ENST00000253339		94	tCt/tAt																																																																														
PMS2	5395	MSKCC	GRCh37	7	6026395	6026395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	28	401	0	ENST00000265849.7:c.2001G>T	p.Glu667Asp	p.E667D	ENST00000265849	NM_000535.5	667	gaG/gaT																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739888	41739888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	89	357	1	ENST00000242208.4:c.85C>A	p.His29Asn	p.H29N	ENST00000242208	NM_002192.2	29	Cac/Aac																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50358679	50358679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	57	251	0	ENST00000331340.3:c.22G>T	p.Asp8Tyr	p.D8Y	ENST00000331340	NM_006060.4	8	Gac/Tac																																																																														
HGF	3082	MSKCC	GRCh37	7	81334756	81334756	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	150	552	0	ENST00000222390.5:c.1960G>T	p.Glu654Ter	p.E654*	ENST00000222390	NM_000601.4	654	Gag/Tag																																																																														
HGF	3082	MSKCC	GRCh37	7	81388044	81388044	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	70	452	0	ENST00000222390.5:c.331G>T	p.Glu111Ter	p.E111*	ENST00000222390	NM_000601.4	111	Gaa/Taa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508531	106508531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	44	261	0	ENST00000359195.3:c.525C>A	p.Phe175Leu	p.F175L	ENST00000359195	NM_002649.2	175	ttC/ttA																																																																														
MET	4233	MSKCC	GRCh37	7	116371905	116371905	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	137	462	0	ENST00000397752.3:c.1384T>A	p.Phe462Ile	p.F462I	ENST00000397752	NM_000245.2	462	Ttc/Atc																																																																														
MET	4233	MSKCC	GRCh37	7	116415062	116415062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	36	553	0	ENST00000397752.3:c.3156C>G	p.His1052Gln	p.H1052Q	ENST00000397752	NM_000245.2	1052	caC/caG																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38133997	38133997	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	51	516	0	ENST00000317025.8:c.3889G>T	p.Glu1297Ter	p.E1297*	ENST00000317025	NM_023034.1	1297	Gaa/Taa																																																																														
RP11-513D5.2	0	MSKCC	GRCh37	8	38194840	38194840	+	splice_acceptor_variant,non_coding_transcript_variant	Splice_Site	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	165	467	0	ENST00000527912.1:n.206-1G>T		p.X69_splice	ENST00000527912		69																																																																															
RAD21	5885	MSKCC	GRCh37	8	117864899	117864899	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	35	477	0	ENST00000297338.2:c.1210A>G	p.Arg404Gly	p.R404G	ENST00000297338	NM_006265.2	404	Agg/Ggg																																																																														
MYC	4609	MSKCC	GRCh37	8	128750835	128750835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	25	553	0	ENST00000377970.2:c.372C>A	p.Asp124Glu	p.D124E	ENST00000377970	NM_002467.4	124	gaC/gaA																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145740578	145740578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	38	656	0	ENST00000428558.2:c.1439C>A	p.Ala480Asp	p.A480D	ENST00000428558	NM_004260.3	480	gCc/gAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484185	8484185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	39	577	0	ENST00000356435.5:c.3347G>T	p.Gly1116Val	p.G1116V	ENST00000356435		1116	gGg/gTg																																																																														
FANCC	2176	MSKCC	GRCh37	9	97912370	97912370	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	102	265	0	ENST00000289081.3:c.522-1G>T		p.X174_splice	ENST00000289081	NM_000136.2	174																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101891336	101891336	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	144	557	0	ENST00000374994.4:c.297T>A	p.Tyr99Ter	p.Y99*	ENST00000374994	NM_004612.2	99	taT/taA																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101904821	101904821	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	40	348	0	ENST00000374994.4:c.809A>T	p.Asn270Ile	p.N270I	ENST00000374994	NM_004612.2	270	aAt/aTt																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908816	101908816	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	130	445	0	ENST00000374994.4:c.1180G>T	p.Glu394Ter	p.E394*	ENST00000374994	NM_004612.2	394	Gaa/Taa																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912019	127912019	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	76	382	0	ENST00000373547.4:c.851T>G	p.Leu284Ter	p.L284*	ENST00000373547	NM_002721.4	284	tTa/tGa																																																																														
ABL1	25	MSKCC	GRCh37	9	133750333	133750333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	53	527	0	ENST00000318560.5:c.1164G>T	p.Met388Ile	p.M388I	ENST00000318560	NM_005157.4	388	atG/atT																																																																														
ABL1	25	MSKCC	GRCh37	9	133759501	133759501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	148	589	0	ENST00000318560.5:c.1824G>T	p.Lys608Asn	p.K608N	ENST00000318560	NM_005157.4	608	aaG/aaT																																																																														
ABL1	25	MSKCC	GRCh37	9	133760859	133760859	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	120	719	0	ENST00000318560.5:c.3182A>C	p.Lys1061Thr	p.K1061T	ENST00000318560	NM_005157.4	1061	aAa/aCa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933976	39933976	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	175	348	1	ENST00000378444.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000378444	NM_001123385.1	208	gAc/gTc																																																																														
PAK1	5058	MSKCC	GRCh37	11	77043904	77043995	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTACAAGGCCTGGCAATAAAAATGGTGAATCACCTTGAGCTCCAAATGAGGCTCTCTCTTGTTCCCCATATACAAGTTCTAGAAATATGGTC	GTACAAGGCCTGGCAATAAAAATGGTGAATCACCTTGAGCTCCAAATGAGGCTCTCTCTTGTTCCCCATATACAAGTTCTAGAAATATGGTC	T			P-0033748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	65	601	0	ENST00000356341.3:c.1414-83_1422delinsA		p.X472_splice	ENST00000356341	NM_002576.4	472																																																																															
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	331	464	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	22	450	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029437	16029439	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0033853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	308	485	0	ENST00000268712.3:c.1591_1593delGAA	p.Glu531del	p.E531del	ENST00000268712	NM_006311.3	531	GAA/-																																																																														
APC	324	MSKCC	GRCh37	5	112176863	112176863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	217	342	0	ENST00000257430.4:c.5572C>T	p.Arg1858Ter	p.R1858*	ENST00000257430	NM_000038.5	1858	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670324	134670324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	182	315	0	ENST00000398015.3:c.235C>T	p.Arg79Trp	p.R79W	ENST00000398015	NM_004441.4	79	Cgg/Tgg																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610417	81610417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	115	356	1	ENST00000298171.2:c.2015G>A	p.Cys672Tyr	p.C672Y	ENST00000298171	NM_000369.2	672	tGt/tAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	36	252	1				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0034021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	23	280	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240285	41240285	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	27	295	0	ENST00000379561.5:c.65C>G	p.Ser22Trp	p.S22W	ENST00000379561	NM_002015.3	22	tCg/tGg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610589	52610589	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	37	455	0	ENST00000394830.3:c.3584T>A	p.Leu1195Gln	p.L1195Q	ENST00000394830	NM_018313.4	1195	cTg/cAg																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045706	26045706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	21	245	0	ENST00000540144.1:c.68C>T	p.Thr23Ile	p.T23I	ENST00000540144	NM_003531.2	23	aCt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	155	389	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	66	235	0				ENST00000310581	NM_198253.2																																																																																
CREBBP	1387	MSKCC	GRCh37	16	3817754	3817754	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	224	612	0	ENST00000262367.5:c.3217C>T	p.Gln1073Ter	p.Q1073*	ENST00000262367	NM_004380.2	1073	Cag/Tag																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245843	46245843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	85	310	0	ENST00000334344.6:c.3937C>T	p.Gln1313Ter	p.Q1313*	ENST00000334344	NM_152641.2	1313	Caa/Taa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44937684	44937684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	202	255	0	ENST00000377967.4:c.2872C>T	p.Gln958Ter	p.Q958*	ENST00000377967	NM_021140.2	958	Caa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023633	27023634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGGCTC			P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	58	234	0	ENST00000324856.7:c.741_747dup	p.Lys250ArgfsTer152	p.K250Rfs*152	ENST00000324856	NM_006015.4	247	gcc/gCCGGCTCcc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870966	12870966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	92	284	0	ENST00000228872.4:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000228872	NM_004064.3	65	Cag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911757	32911757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	194	540	1	ENST00000380152.3:c.3265C>T	p.Gln1089Ter	p.Q1089*	ENST00000380152		1089	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107014	27107014	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	127	436	0	ENST00000324856.7:c.6625C>T	p.Gln2209Ter	p.Q2209*	ENST00000324856	NM_006015.4	2209	Cag/Tag																																																																														
PMS2	5395	MSKCC	GRCh37	7	6043376	6043376	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	21	81	0	ENST00000265849.7:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000265849	NM_000535.5	100	Cag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56488224	56488224	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	196	505	0	ENST00000267101.3:c.1743T>A	p.Asp581Glu	p.D581E	ENST00000267101	NM_001982.3	581	gaT/gaA																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46281791	46281791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	196	605	0	ENST00000371998.3:c.4238C>T	p.Ser1413Phe	p.S1413F	ENST00000371998		1413	tCt/tTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629973	187629973	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	204	636	0	ENST00000441802.2:c.1009C>T	p.Gln337Ter	p.Q337*	ENST00000441802	NM_005245.3	337	Cag/Tag																																																																														
SMO	6608	MSKCC	GRCh37	7	128850280	128850280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	214	727	0	ENST00000249373.3:c.1543C>T	p.Leu515Phe	p.L515F	ENST00000249373	NM_005631.4	515	Ctt/Ttt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137320961	137320961	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0034023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	217	721	0	ENST00000481739.1:c.918T>G	p.Asn306Lys	p.N306K	ENST00000481739	NM_002957.4	306	aaT/aaG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	169	387	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0034024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	240	554	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987039	36987039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	18	529	0	ENST00000354822.5:c.650C>T	p.Ser217Leu	p.S217L	ENST00000354822	NM_001079668.2	217	tCg/tTg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141549428	141549428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	40	237	0	ENST00000220592.5:c.2160G>C	p.Lys720Asn	p.K720N	ENST00000220592	NM_012154.3	720	aaG/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0034026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	103	429	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710540	114710540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	59	278	0	ENST00000543371.1:c.28del	p.Asp10MetfsTer3	p.D10Mfs*3	ENST00000543371	NM_001198531.1	9	Ggg/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577529	7577529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	195	613	0	ENST00000269305.4:c.752T>C	p.Ile251Thr	p.I251T	ENST00000269305	NM_001126112.2	251	aTc/aCc																																																																														
APC	324	MSKCC	GRCh37	5	112174389	112174389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0034026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	34	212	0	ENST00000257430.4:c.3098del	p.Asp1033ValfsTer4	p.D1033Vfs*4	ENST00000257430	NM_000038.5	1033	gAt/gt																																																																														
IRF4	3662	MSKCC	GRCh37	6	407582	407582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	26	351	0	ENST00000380956.4:c.1340C>G	p.Ser447Cys	p.S447C	ENST00000380956	NM_001195286.1	447	tCc/tGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0034066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	43	357	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	10	215	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	203	468	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	126	553	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	256	536	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193121527	193121527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0034067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	36	241	0	ENST00000367435.3:c.925A>G	p.Ile309Val	p.I309V	ENST00000367435	NM_024529.4	309	Att/Gtt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	54	422	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	382	307	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	104	282	3	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	91	308	2	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	145	368	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	24	286	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
AR	367	MSKCC	GRCh37	X	66931247	66931247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	93	115	0	ENST00000374690.3:c.1889G>A	p.Arg630Gln	p.R630Q	ENST00000374690	NM_000044.3	630	cGg/cAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	15	104	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262117	10262119	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	167	508	0	ENST00000340748.4:c.2172_2174del	p.Lys725del	p.K725del	ENST00000340748		724	aaGAAa/aaa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	125	349	7	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
RARA	5914	MSKCC	GRCh37	17	38508182	38508184	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	18	236	0	ENST00000254066.5:c.499_501delAAG	p.Lys167del	p.K167del	ENST00000254066	NM_000964.3	164	AAG/-																																																																														
CTCF	10664	MSKCC	GRCh37	16	67654643	67654643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	123	348	0	ENST00000264010.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000264010	NM_006565.3	377	cGt/cAt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40497584	40497584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	37	399	1	ENST00000264657.5:c.365C>T	p.Ala122Val	p.A122V	ENST00000264657	NM_139276.2	122	gCg/gTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120178	70120178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	108	306	0	ENST00000245479.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000245479	NM_000346.3	394	Cga/Tga																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10247836	10247836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	206	509	0	ENST00000340748.4:c.4366C>T	p.Arg1456Trp	p.R1456W	ENST00000340748		1456	Cgg/Tgg																																																																														
PARP1	142	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	116	382	2	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1612346	1612346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	193	577	0	ENST00000344749.5:c.1673G>A	p.Arg558His	p.R558H	ENST00000344749	NM_001136139.2	558	cGc/cAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	170	610	4	ENST00000263253.7:c.6970delC	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36171732	36171732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	85	235	0	ENST00000300305.3:c.833C>T	p.Pro278Leu	p.P278L	ENST00000300305		278	cCg/cTg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65313315	65313315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	25	355	0	ENST00000342505.4:c.1799G>A	p.Gly600Glu	p.G600E	ENST00000342505	NM_002227.2	600	gGg/gAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023290	27023290	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	37	85	0	ENST00000324856.7:c.400del	p.Ala134ArgfsTer98	p.A134Rfs*98	ENST00000324856	NM_006015.4	132	gtG/gt																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	38	564	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151853077	151853077	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	125	259	1	ENST00000262189.6:c.11878C>T	p.Arg3960Ter	p.R3960*	ENST00000262189	NM_170606.2	3960	Cga/Tga																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625345	69625345	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200088042		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	103	445	0	ENST00000334134.2:c.448G>A	p.Glu150Lys	p.E150K	ENST00000334134	NM_005247.2	150	Gag/Aag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426774	49426774	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	70	246	2	ENST00000301067.7:c.11714A>T	p.Gln3905Leu	p.Q3905L	ENST00000301067	NM_003482.3	3905	cAg/cTg																																																																														
TOP1	7150	MSKCC	GRCh37	20	39726940	39726940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	59	121	0	ENST00000361337.2:c.938C>T	p.Thr313Met	p.T313M	ENST00000361337	NM_003286.2	313	aCg/aTg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71037144	71037144	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	64	258	0	ENST00000318789.4:c.1146+1G>A		p.X382_splice	ENST00000318789	NM_032682.5	382																																																																															
PMS1	5378	MSKCC	GRCh37	2	190732617	190732617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	117	319	0	ENST00000441310.2:c.2435G>A	p.Arg812His	p.R812H	ENST00000441310	NM_000534.4	812	cGt/cAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29661917	29661917	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	118	382	0	ENST00000358273.4:c.5878del	p.Cys1960AlafsTer19	p.C1960Afs*19	ENST00000358273	NM_001042492.2	1958	cgT/cg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62326690	62326690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	170	536	0	ENST00000508582.2:c.3581G>A	p.Arg1194Gln	p.R1194Q	ENST00000508582		1194	cGg/cAg																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099211	4099211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	124	362	0	ENST00000262948.5:c.907C>T	p.Arg303Cys	p.R303C	ENST00000262948	NM_030662.3	303	Cgc/Tgc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15300216	15300216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	144	468	0	ENST00000263388.2:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000263388	NM_000435.2	354	Gcc/Acc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47693856	47693856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	109	223	0	ENST00000233146.2:c.1570C>T	p.Arg524Cys	p.R524C	ENST00000233146	NM_000251.2	524	Cgt/Tgt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934994	49934994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	121	480	1	ENST00000296474.3:c.2005C>T	p.Arg669Trp	p.R669W	ENST00000296474	NM_002447.2	669	Cgg/Tgg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289862	15289862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	138	549	0	ENST00000263388.2:c.3692G>A	p.Arg1231His	p.R1231H	ENST00000263388	NM_000435.2	1231	cGt/cAt																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263982	104263982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	76	205	0	ENST00000369902.3:c.73G>A	p.Ala25Thr	p.A25T	ENST00000369902	NM_016169.3	25	Gcc/Acc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21628438	21628438	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	178	417	0	ENST00000421138.2:c.1180T>A	p.Ser394Thr	p.S394T	ENST00000421138		394	Tcc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427428	49427428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	170	494	1	ENST00000301067.7:c.11060G>A	p.Gly3687Asp	p.G3687D	ENST00000301067	NM_003482.3	3687	gGt/gAt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578254	28578254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs191501493		P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	70	246	0	ENST00000241453.7:c.2917C>T	p.Arg973Ter	p.R973*	ENST00000241453	NM_004119.2	973	Cga/Tga																																																																														
GREM1	26585	MSKCC	GRCh37	15	33023064	33023064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	27	252	0	ENST00000300177.4:c.173G>A	p.Arg58Gln	p.R58Q	ENST00000300177	NM_001191322.1	58	cGg/cAg																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66782084	66782084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	98	244	0	ENST00000307102.5:c.1051G>C	p.Asp351His	p.D351H	ENST00000307102	NM_002755.3	351	Gat/Cat																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827157	72827157	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	24	274	0	ENST00000268489.5:c.9424A>G	p.Thr3142Ala	p.T3142A	ENST00000268489	NM_006885.3	3142	Aca/Gca																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2191212	2191212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	129	447	0	ENST00000398665.3:c.466G>A	p.Asp156Asn	p.D156N	ENST00000398665	NM_032482.2	156	Gac/Aac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214613	5214613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	157	515	1	ENST00000357368.4:c.4453G>A	p.Ala1485Thr	p.A1485T	ENST00000357368	NM_002850.3	1485	Gcg/Acg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10252730	10252730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	137	416	1	ENST00000340748.4:c.3235G>A	p.Gly1079Ser	p.G1079S	ENST00000340748		1079	Ggc/Agc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17389781	17389781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	212	533	0	ENST00000359435.4:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000359435	NM_001033549.1	305	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223502	36223502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	164	542	2	ENST00000222270.7:c.6052G>A	p.Gly2018Arg	p.G2018R	ENST00000222270	NM_014727.1	2018	Ggg/Agg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25469969	25469969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	144	436	1	ENST00000264709.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000264709	NM_175629.2	358	aCg/aTg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178095765	178095767	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	127	331	0	ENST00000397062.3:c.1564_1566del	p.Ile522del	p.I522del	ENST00000397062	NM_006164.4	522	ATA/-																																																																														
BARD1	580	MSKCC	GRCh37	2	215657077	215657077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	34	296	0	ENST00000260947.4:c.308G>T	p.Ser103Ile	p.S103I	ENST00000260947	NM_000465.2	103	aGc/aTc																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22161960	22161960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	125	320	1	ENST00000215832.6:c.295A>G	p.Lys99Glu	p.K99E	ENST00000215832	NM_002745.4	99	Aaa/Gaa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162429	47162429	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	27	278	0	ENST00000409792.3:c.3697del	p.Thr1233GlnfsTer3	p.T1233Qfs*3	ENST00000409792	NM_014159.6	1233	Aca/ca																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114287	73114287	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	43	130	0	ENST00000356692.5:c.923A>C	p.Glu308Ala	p.E308A	ENST00000356692		308	gAa/gCa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332665	153332667	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	30	337	0	ENST00000281708.4:c.289_291del	p.Glu97del	p.E97del	ENST00000281708	NM_033632.3	97	GAA/-																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627782	187627782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	26	344	0	ENST00000441802.2:c.3200G>T	p.Gly1067Val	p.G1067V	ENST00000441802	NM_005245.3	1067	gGg/gTg																																																																														
NPM1	4869	MSKCC	GRCh37	5	170827870	170827870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	101	239	0	ENST00000296930.5:c.610G>A	p.Ala204Thr	p.A204T	ENST00000296930	NM_002520.6	204	Gca/Aca																																																																														
INHBA	3624	MSKCC	GRCh37	7	41729442	41729442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	121	399	0	ENST00000242208.4:c.1087G>A	p.Gly363Arg	p.G363R	ENST00000242208	NM_002192.2	363	Ggg/Agg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223603	55223603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	75	310	0	ENST00000275493.2:c.970C>T	p.Arg324Cys	p.R324C	ENST00000275493	NM_005228.3	324	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151900086	151900086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	154	304	0	ENST00000262189.6:c.4025A>G	p.Glu1342Gly	p.E1342G	ENST00000262189	NM_170606.2	1342	gAa/gGa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152132815	152132815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	45	406	0	ENST00000262189.6:c.57del	p.Glu20ArgfsTer85	p.E20Rfs*85	ENST00000262189	NM_170606.2	19	ccC/cc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738476	145738476	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	142	457	0	ENST00000428558.2:c.2509A>G	p.Thr837Ala	p.T837A	ENST00000428558	NM_004260.3	837	Acg/Gcg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8499681	8499681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	176	331	1	ENST00000356435.5:c.2288C>A	p.Pro763His	p.P763H	ENST00000356435		763	cCc/cAc																																																																														
ABL1	25	MSKCC	GRCh37	9	133759676	133759676	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	25	441	1	ENST00000318560.5:c.2002del	p.Val668SerfsTer26	p.V668Sfs*26	ENST00000318560	NM_005157.4	667	Ggg/gg																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139563037	139563037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0034070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	163	535	1	ENST00000308874.7:c.109G>A	p.Gly37Arg	p.G37R	ENST00000308874		37	Ggg/Agg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0027600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	409	614	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	527	718	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
TET1	80312	MSKCC	GRCh37	10	70406211	70406211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	395	695	0	ENST00000373644.4:c.3725T>A	p.Ile1242Lys	p.I1242K	ENST00000373644	NM_030625.2	1242	aTa/aAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991914	72991914	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	289	535	0	ENST00000268489.5:c.2131C>G	p.Pro711Ala	p.P711A	ENST00000268489	NM_006885.3	711	Ccc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	408	668	19	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	330	578	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112891078	112891078	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	158	525	0	ENST00000351677.2:c.412C>T	p.Arg138Ter	p.R138*	ENST00000351677	NM_002834.3	138	Cga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38942407	38942407	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0033963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	66	388	0	ENST00000357387.3:c.5126G>T	p.Ter1709LeuextTer29	p.*1709Lext*29	ENST00000357387	NM_152756.3	1709	tGa/tTa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492634	56492634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	160	438	0	ENST00000267101.3:c.2784G>C	p.Glu928Asp	p.E928D	ENST00000267101	NM_001982.3	928	gaG/gaC																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541850	187541850	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	166	474	0	ENST00000441802.2:c.5890T>G	p.Ser1964Ala	p.S1964A	ENST00000441802	NM_005245.3	1964	Tct/Gct																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23540131	23540141	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGCGTCTC	GCCAGCGTCTC	-			P-0033964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	21	59	0	ENST00000380871.4:c.262_272del	p.Glu88ArgfsTer16	p.E88Rfs*16	ENST00000380871	NM_006167.3	88	GAGACGCTGGCa/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0033967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	300	715	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108115654	108115654	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	105	512	0	ENST00000278616.4:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000278616	NM_000051.3	268	Caa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974725	21974742	+	inframe_deletion	In_Frame_Del	DEL	CGCCTCCAGCAGCGCCCG	CGCCTCCAGCAGCGCCCG	-			P-0033967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	31	231	0	ENST00000304494.5:c.85_102delCGGGCGCTGCTGGAGGCG	p.Arg29_Ala34del	p.R29_A34del	ENST00000304494	NM_000077.4	29	CGGGCGCTGCTGGAGGCG/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974725	21974742	+	inframe_deletion	In_Frame_Del	DEL	CGCCTCCAGCAGCGCCCG	CGCCTCCAGCAGCGCCCG	-			P-0033967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	31	231	0	ENST00000304494.5:c.85_102delCGGGCGCTGCTGGAGGCG	p.Arg29_Ala34del	p.R29_A34del	ENST00000304494	NM_000077.4	29	CGGGCGCTGCTGGAGGCG/-																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	72	319	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	165	643	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	64	307	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922321	178922321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	42	367	0	ENST00000263967.3:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000263967	NM_006218.2	364	Gga/Aga																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246498694	246498694	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	72	557	0	ENST00000388985.4:c.311T>A	p.Leu104His	p.L104H	ENST00000388985		104	cTt/cAt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085741	16085741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	88	457	0	ENST00000281043.3:c.917C>A	p.Ala306Glu	p.A306E	ENST00000281043	NM_005378.4	306	gCa/gAa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091165	29091167	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0033968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	105	392	0	ENST00000328354.6:c.1323_1325del	p.Ser442del	p.S442del	ENST00000328354	NM_007194.3	441	acCAGt/act																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922336	178922336	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	44	375	0	ENST00000263967.3:c.1105G>C	p.Asp369His	p.D369H	ENST00000263967	NM_006218.2	369	Gac/Cac																																																																														
ROS1	6098	MSKCC	GRCh37	6	117724429	117724429	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	102	416	0	ENST00000368508.3:c.450A>C	p.Arg150Ser	p.R150S	ENST00000368508	NM_002944.2	150	agA/agC																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509297	106509297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	70	448	0	ENST00000359195.3:c.1291C>T	p.Leu431Phe	p.L431F	ENST00000359195	NM_002649.2	431	Ctc/Ttc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	13	362	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976745	2976745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	18	768	2	ENST00000396946.4:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000396946	NM_032415.4	423	Cgg/Tgg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422419	225422419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	28	635	0	ENST00000264414.4:c.221A>G	p.Tyr74Cys	p.Y74C	ENST00000264414	NM_003590.4	74	tAc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	31	558	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	110	707	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630794	187630794	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	161	842	0	ENST00000441802.2:c.188T>G	p.Ile63Ser	p.I63S	ENST00000441802	NM_005245.3	63	aTt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	230	621	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0033991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	178	479	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710518	114710518	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0033991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	157	279	0	ENST00000543371.1:c.3G>A	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	atG/atA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088669	27088669	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	300	797	0	ENST00000324856.7:c.2281del	p.Gln761SerfsTer72	p.Q761Sfs*72	ENST00000324856	NM_006015.4	760	Ccc/cc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151849997	151849997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	119	368	0	ENST00000262189.6:c.12319G>A	p.Val4107Ile	p.V4107I	ENST00000262189	NM_170606.2	4107	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	164	712	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610333	10610366	+	frameshift_variant	Frame_Shift_Del	DEL	TCAATGGACACCACCTCCATGCCCTGCTCCCGCA	TCAATGGACACCACCTCCATGCCCTGCTCCCGCA	-			P-0033993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	62	805	0	ENST00000171111.5:c.344_377del	p.Leu115ArgfsTer31	p.L115Rfs*31	ENST00000171111	NM_203500.1	115	cTGCGGGAGCAGGGCATGGAGGTGGTGTCCATTGAg/cg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213920	36213920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	45	689	0	ENST00000222270.7:c.2746G>A	p.Glu916Lys	p.E916K	ENST00000222270	NM_014727.1	916	Gag/Aag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033634	48033634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	76	496	0	ENST00000234420.5:c.3845C>G	p.Thr1282Ser	p.T1282S	ENST00000234420	NM_000179.2	1282	aCt/aGt																																																																														
MYC	4609	MSKCC	GRCh37	8	128751251	128751251	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	46	343	0	ENST00000377970.2:c.788C>G	p.Thr263Ser	p.T263S	ENST00000377970	NM_002467.4	263	aCc/aGc																																																																														
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	104	385	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579346	7579346	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	237	708	0	ENST00000269305.4:c.341del	p.Leu114CysfsTer9	p.L114Cfs*9	ENST00000269305	NM_001126112.2	114	tTg/tg																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	67	467	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16021243	16021243	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	172	436	0	ENST00000268712.3:c.2014C>T	p.Arg672Ter	p.R672*	ENST00000268712	NM_006311.3	672	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120483242	120483242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	116	489	0	ENST00000256646.2:c.3119G>T	p.Cys1040Phe	p.C1040F	ENST00000256646	NM_024408.3	1040	tGt/tTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29687589	29687589	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	110	718	0	ENST00000358273.4:c.8245G>T	p.Glu2749Ter	p.E2749*	ENST00000358273	NM_001042492.2	2749	Gaa/Taa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576431	67576431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	142	549	1	ENST00000274335.5:c.710G>A	p.Trp237Ter	p.W237*	ENST00000274335		237	tGg/tAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140534492	140534492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	94	551	0	ENST00000288602.6:c.421C>G	p.Pro141Ala	p.P141A	ENST00000288602	NM_004333.4	141	Ccc/Gcc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437605	56437605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	202	419	0	ENST00000407977.2:c.857G>A	p.Arg286Gln	p.R286Q	ENST00000407977		286	cGg/cAg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098966	178098966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	154	368	0	ENST00000397062.3:c.79G>T	p.Asp27Tyr	p.D27Y	ENST00000397062	NM_006164.4	27	Gat/Tat																																																																														
CALR	811	MSKCC	GRCh37	19	13051469	13051469	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0033997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	213	429	0	ENST00000316448.5:c.816+1G>A		p.X272_splice	ENST00000316448	NM_004343.3	272																																																																															
TSHR	7253	MSKCC	GRCh37	14	81609504	81609504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	253	471	0	ENST00000298171.2:c.1102C>A	p.Gln368Lys	p.Q368K	ENST00000298171	NM_000369.2	368	Cag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	42005392	42005393	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0033997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	282	542	0	ENST00000219905.7:c.3128_3129delinsTT	p.Arg1043Leu	p.R1043L	ENST00000219905	NM_001164273.1	1043	cGA/cTT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578397	7578398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	389	690	0	ENST00000269305.4:c.532_533insT	p.His178LeufsTer3	p.H178Lfs*3	ENST00000269305	NM_001126112.2	178	cac/cTac																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25470614	25470614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	538	612	0	ENST00000264709.3:c.860G>T	p.Gly287Val	p.G287V	ENST00000264709	NM_175629.2	287	gGc/gTc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528937	157528937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	305	592	1	ENST00000346085.5:c.6662G>T	p.Arg2221Leu	p.R2221L	ENST00000346085	NM_020732.3	2221	cGg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	184	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0033823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	123	490	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	37	328	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	126	309	0				ENST00000310581	NM_198253.2																																																																																
PARP1	142	MSKCC	GRCh37	1	226568865	226568865	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	243	520	0	ENST00000366794.5:c.1204T>G	p.Ser402Ala	p.S402A	ENST00000366794	NM_001618.3	402	Tcc/Gcc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492896	56492896	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	54	306	0	ENST00000407977.2:c.43T>A	p.Trp15Arg	p.W15R	ENST00000407977		15	Tgg/Agg																																																																														
REL	5966	MSKCC	GRCh37	2	61148900	61148900	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	24	302	0	ENST00000295025.8:c.1090C>T	p.Pro364Ser	p.P364S	ENST00000295025	NM_002908.2	364	Cca/Tca																																																																														
BCL6	604	MSKCC	GRCh37	3	187447712	187447712	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	123	538	0	ENST00000232014.4:c.481G>C	p.Glu161Gln	p.E161Q	ENST00000232014	NM_001130845.1	161	Gag/Cag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630329	187630329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	210	614	0	ENST00000441802.2:c.653A>G	p.Tyr218Cys	p.Y218C	ENST00000441802	NM_005245.3	218	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	97	254	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	247	547	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	241	546	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675170	30675172	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	229	484	0	ENST00000376406.3:c.3073_3075delAAG	p.Lys1025del	p.K1025del	ENST00000376406	NM_014641.2	1025	AAG/-																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100645	8100645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	116	589	0	ENST00000346208.3:c.619G>A	p.Ala207Thr	p.A207T	ENST00000346208		207	Gcc/Acc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111884785	111884785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	211	434	1	ENST00000341259.2:c.874G>A	p.Glu292Lys	p.E292K	ENST00000341259	NM_005475.2	292	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112173601	112173601	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	137	315	0	ENST00000257430.4:c.2310del	p.Glu771LysfsTer6	p.E771Kfs*6	ENST00000257430	NM_000038.5	770	tcA/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			115	240	466	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0016870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			168	509	480	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240752	53240752	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	361	627	0	ENST00000375401.3:c.1328A>T	p.Asp443Val	p.D443V	ENST00000375401	NM_004187.3	443	gAc/gTc																																																																														
ATM	472	MSKCC	GRCh37	11	108235838	108235838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			168	271	477	0	ENST00000278616.4:c.8880G>T	p.Trp2960Cys	p.W2960C	ENST00000278616	NM_000051.3	2960	tgG/tgT																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870853	12870853	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			48	130	144	1	ENST00000228872.4:c.80C>A	p.Ser27Ter	p.S27*	ENST00000228872	NM_004064.3	27	tCg/tAg																																																																														
MGA	23269	MSKCC	GRCh37	15	42019443	42019443	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	240	593	0	ENST00000219905.7:c.3496G>T	p.Glu1166Ter	p.E1166*	ENST00000219905	NM_001164273.1	1166	Gaa/Taa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670886	134670886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	139	250	1	ENST00000398015.3:c.797C>T	p.Ala266Val	p.A266V	ENST00000398015	NM_004441.4	266	gCa/gTa																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005429	29005429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	20	360	0	ENST00000282397.4:c.832G>T	p.Val278Leu	p.V278L	ENST00000282397	NM_002019.4	278	Gta/Tta																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300039	137300039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	345	683	0	ENST00000481739.1:c.324G>C	p.Lys108Asn	p.K108N	ENST00000481739	NM_002957.4	108	aaG/aaC																																																																														
ATRX	546	MSKCC	GRCh37	X	76912050	76912050	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	76	396	0	ENST00000373344.5:c.4214G>T	p.Arg1405Met	p.R1405M	ENST00000373344	NM_000489.3	1405	aGg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	71	550	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	101	425	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249092	55249092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	51	611	0	ENST00000275493.2:c.2390G>C	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	tGc/tCc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	364595	364595	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	29	723	0	ENST00000262320.3:c.967C>T	p.Gln323Ter	p.Q323*	ENST00000262320	NM_003502.3	323	Cag/Tag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222867	5222867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	11	369	0	ENST00000357368.4:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000357368	NM_002850.3	979	cGa/cAa																																																																														
AURKA	6790	MSKCC	GRCh37	20	54956508	54956508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	21	369	0	ENST00000312783.6:c.686A>T	p.Asp229Val	p.D229V	ENST00000312783	NM_198436.1	229	gAt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	49	323	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	18	636	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52693429	52693429	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0033797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	38	558	1	ENST00000322088.6:c.78+2T>A		p.X26_splice	ENST00000322088	NM_014225.5	26																																																																															
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	501	557	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251033	99251037	+	frameshift_variant	Frame_Shift_Del	DEL	TACAA	TACAA	-			P-0033523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	109	427	0	ENST00000268035.6:c.337_341del	p.Tyr113LeufsTer30	p.Y113Lfs*30	ENST00000268035	NM_000875.3	113	TACAAc/c																																																																														
CDK12	51755	MSKCC	GRCh37	17	37665979	37665979	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	279	403	0	ENST00000447079.4:c.2631T>G	p.Asp877Glu	p.D877E	ENST00000447079	NM_015083.1	877	gaT/gaG																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066656	94066656	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	95	462	0	ENST00000369303.4:c.1103T>A	p.Leu368Ter	p.L368*	ENST00000369303	NM_004440.3	368	tTg/tAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	59	376	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	114	520	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864663	68864663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	92	197	0	ENST00000288368.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000288368	NM_024870.2	12	Gag/Aag																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207627	2207627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	210	532	1	ENST00000398665.3:c.911C>T	p.Ser304Leu	p.S304L	ENST00000398665	NM_032482.2	304	tCg/tTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247554	123247554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	186	619	0	ENST00000358487.5:c.1937G>T	p.Gly646Val	p.G646V	ENST00000358487	NM_000141.4	646	gGa/gTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900956	3900956	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	182	550	0	ENST00000262367.5:c.140A>G	p.Asn47Ser	p.N47S	ENST00000262367	NM_004380.2	47	aAt/aGt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532484	63532484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	101	643	0	ENST00000307078.5:c.2095G>A	p.Glu699Lys	p.E699K	ENST00000307078	NM_004655.3	699	Gag/Aag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144848	11144848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	177	411	0	ENST00000344626.4:c.3923G>T	p.Arg1308Leu	p.R1308L	ENST00000344626	NM_003072.3	1308	cGg/cTg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148511132	148511133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	79	391	0	ENST00000320356.2:c.1769dup	p.Cys590TrpfsTer8	p.C590Wfs*8	ENST00000320356	NM_004456.4	590	tgt/tgGt																																																																														
TEK	7010	MSKCC	GRCh37	9	27212732	27212732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	287	624	2	ENST00000380036.4:c.2714C>A	p.Ala905Glu	p.A905E	ENST00000380036	NM_000459.3	905	gCg/gAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412155	63412155	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	440	857	0	ENST00000330258.3:c.1012del	p.Asp338ThrfsTer3	p.D338Tfs*3	ENST00000330258	NM_152424.3	338	Gac/ac																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0033807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	110	580	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	187	604	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	59	296	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175789	112175789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	69	266	0	ENST00000257430.4:c.4501del	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1500	Ttt/tt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593496	48593496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	113	256	1	ENST00000342988.3:c.1247G>A	p.Arg416Lys	p.R416K	ENST00000342988	NM_005359.5	416	aGa/aAa																																																																														
NF1	4763	MSKCC	GRCh37	17	29588751	29588751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	54	276	0	ENST00000358273.4:c.4600C>T	p.Arg1534Ter	p.R1534*	ENST00000358273	NM_001042492.2	1534	Cga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950304	38950304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	118	528	0	ENST00000357387.3:c.3646C>T	p.Arg1216Cys	p.R1216C	ENST00000357387	NM_152756.3	1216	Cgt/Tgt																																																																														
ALK	238	MSKCC	GRCh37	2	30142981	30142981	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	131	662	0	ENST00000389048.3:c.545A>C	p.Glu182Ala	p.E182A	ENST00000389048	NM_004304.4	182	gAa/gCa																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047393	128047393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139690693		P-0033810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	19	333	1	ENST00000285398.2:c.529G>A	p.Val177Ile	p.V177I	ENST00000285398	NM_000122.1	177	Gtt/Att																																																																														
AGO2	27161	MSKCC	GRCh37	8	141542615	141542615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	41	545	0	ENST00000220592.5:c.2371G>T	p.Val791Leu	p.V791L	ENST00000220592	NM_012154.3	791	Gtg/Ttg																																																																														
EGFL7	51162	MSKCC	GRCh37	9	139564144	139564144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	38	770	0	ENST00000308874.7:c.284C>A	p.Thr95Asn	p.T95N	ENST00000308874		95	aCc/aAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	148	418	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	59	638	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72984856	72984856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	101	310	0	ENST00000268489.5:c.2728G>A	p.Glu910Lys	p.E910K	ENST00000268489	NM_006885.3	910	Gag/Aag																																																																														
RAD52	5893	MSKCC	GRCh37	12	1040454	1040454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	93	651	0	ENST00000358495.3:c.118C>G	p.Gln40Glu	p.Q40E	ENST00000358495	NM_134424.2	40	Cag/Gag																																																																														
RB1	5925	MSKCC	GRCh37	13	48936995	48936995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	79	409	0	ENST00000267163.4:c.763C>T	p.Arg255Ter	p.R255*	ENST00000267163	NM_000321.2	255	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	484	770	0	ENST00000269305.4:c.745del	p.Arg249GlyfsTer96	p.R249Gfs*96	ENST00000269305	NM_001126112.2	249	Agg/gg																																																																														
APC	324	MSKCC	GRCh37	5	112175256	112175256	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	61	267	0	ENST00000257430.4:c.3966del	p.Val1323PhefsTer92	p.V1323Ffs*92	ENST00000257430	NM_000038.5	1322	gAa/ga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	330	248	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	543	628	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242758	16242758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	122	613	0	ENST00000375759.3:c.1379G>A	p.Arg460His	p.R460H	ENST00000375759	NM_015001.2	460	cGc/cAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78829313	78829313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	372	605	1	ENST00000306801.3:c.1364G>T	p.Arg455Ile	p.R455I	ENST00000306801	NM_020761.2	455	aGa/aTa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134234	11134234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	222	563	0	ENST00000344626.4:c.2900G>T	p.Arg967Leu	p.R967L	ENST00000344626	NM_003072.3	967	cGt/cTt																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259347	36259347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	153	432	0	ENST00000300305.3:c.144C>A	p.Ser48Arg	p.S48R	ENST00000300305		48	agC/agA																																																																														
NPM1	4869	MSKCC	GRCh37	5	170837540	170837540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	29	128	0	ENST00000296930.5:c.856G>T	p.Asp286Tyr	p.D286Y	ENST00000296930	NM_002520.6	286	Gat/Tat																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652007	36652008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0033925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	385	625	0	ENST00000244741.5:c.131_132dupAG	p.Ala45ArgfsTer104	p.A45Rfs*104	ENST00000244741	NM_000389.4	43	-/GA																																																																														
CARD11	84433	MSKCC	GRCh37	7	2953011	2953011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	114	669	3	ENST00000396946.4:c.2929G>A	p.Val977Met	p.V977M	ENST00000396946	NM_032415.4	977	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	57	542	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	32	314	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925432	114925432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	67	587	0	ENST00000543371.1:c.1510C>T	p.Pro504Ser	p.P504S	ENST00000543371	NM_001198531.1	504	Ccc/Tcc																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944926	31944926	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	21	298	0	ENST00000340398.3:c.175G>T	p.Glu59Ter	p.E59*	ENST00000340398	NM_001013699.2	59	Gag/Tag																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43724720	43724720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	63	760	0	ENST00000382044.4:c.3347G>T	p.Gly1116Val	p.G1116V	ENST00000382044	NM_001141980.1	1116	gGg/gTg																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72873703	72873703	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	45	325	0	ENST00000325599.8:c.600-1G>T		p.X200_splice	ENST00000325599	NM_018130.2	200																																																																															
TGFBR1	7046	MSKCC	GRCh37	9	101907069	101907069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	41	413	0	ENST00000374994.4:c.1029G>T	p.Lys343Asn	p.K343N	ENST00000374994	NM_004612.2	343	aaG/aaT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47035979	47035979	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	55	638	0	ENST00000329236.7:c.426C>A	p.Cys142Ter	p.C142*	ENST00000329236	NM_001204466.1	142	tgC/tgA																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410427	63410427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	57	646	0	ENST00000330258.3:c.2740G>T	p.Gly914Cys	p.G914C	ENST00000330258	NM_152424.3	914	Ggc/Tgc																																																																														
ATRX	546	MSKCC	GRCh37	X	76938909	76938909	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	64	706	1	ENST00000373344.5:c.1839T>A	p.Asp613Glu	p.D613E	ENST00000373344	NM_000489.3	613	gaT/gaA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	51	403	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0033928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	95	297	1				ENST00000310581	NM_198253.2																																																																																
NF1	4763	MSKCC	GRCh37	17	29546122	29546122	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	81	419	0	ENST00000358273.4:c.1627C>T	p.Gln543Ter	p.Q543*	ENST00000358273	NM_001042492.2	543	Cag/Tag																																																																														
MPL	4352	MSKCC	GRCh37	1	43814673	43814673	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	12	311	1	ENST00000372470.3:c.1468G>A	p.Ala490Thr	p.A490T	ENST00000372470	NM_005373.2	490	Gcc/Acc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0033931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	108	599	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
MED12	9968	MSKCC	GRCh37	X	70357768	70357768	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	111	726	0	ENST00000374080.3:c.6019G>T	p.Gly2007Ter	p.G2007*	ENST00000374080		2007	Gga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49415846	49415846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	81	517	0	ENST00000301067.7:c.16501C>T	p.Arg5501Ter	p.R5501*	ENST00000301067	NM_003482.3	5501	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438735	49438739	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGT	AAAGT	-			P-0033932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	30	631	0	ENST00000301067.7:c.4751_4755del	p.Tyr1584SerfsTer17	p.Y1584Sfs*17	ENST00000301067	NM_003482.3	1584	tACTTT/t																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50484288	50484288	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	426	679	1	ENST00000394963.4:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000394963	NM_003076.4	350	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	29	560	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
STK11	6794	MSKCC	GRCh37	19	1207037	1207037	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	24	678	0	ENST00000326873.7:c.127del	p.Ala43ProfsTer8	p.A43Pfs*8	ENST00000326873	NM_000455.4	42	cGg/cg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	347	416	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	348239	348239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	261	509	0	ENST00000262320.3:c.1267G>A	p.Glu423Lys	p.E423K	ENST00000262320	NM_003502.3	423	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023471	27023471	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	229	210	0	ENST00000324856.7:c.577G>T	p.Glu193Ter	p.E193*	ENST00000324856	NM_006015.4	193	Gag/Tag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141551	11141551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	72	411	0	ENST00000344626.4:c.3528C>A	p.Ser1176Arg	p.S1176R	ENST00000344626	NM_003072.3	1176	agC/agA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11307684	11307684	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	217	313	0	ENST00000361445.4:c.1223C>G	p.Thr408Arg	p.T408R	ENST00000361445	NM_004958.3	408	aCa/aGa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72163744	72163744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	212	504	0	ENST00000357731.5:c.614C>A	p.Ala205Glu	p.A205E	ENST00000357731	NM_173808.2	205	gCg/gAg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112511	115112511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	207	448	0	ENST00000257566.3:c.1229C>T	p.Pro410Leu	p.P410L	ENST00000257566	NM_016569.3	410	cCc/cTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48955434	48955434	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	156	296	0	ENST00000267163.4:c.1551del	p.Leu518Ter	p.L518*	ENST00000267163	NM_000321.2	517	aTt/at																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226893	2226893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	57	92	0	ENST00000398665.3:c.4373C>A	p.Ala1458Asp	p.A1458D	ENST00000398665	NM_032482.2	1458	gCc/gAc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602473	10602473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	179	315	0	ENST00000171111.5:c.1105G>A	p.Val369Met	p.V369M	ENST00000171111	NM_203500.1	369	Gtg/Atg																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111881699	111881699	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	101	376	0	ENST00000393256.3:c.377A>T	p.His126Leu	p.H126L	ENST00000393256	NM_006538.4	126	cAc/cTc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434135	12434135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	33	257	0	ENST00000287820.6:c.503G>A	p.Arg168Lys	p.R168K	ENST00000287820	NM_015869.4	168	aGa/aAa																																																																														
HIST1H3D	8351	MSKCC	GRCh37	6	26197229	26197229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	137	258	0	ENST00000356476.2:c.250C>T	p.Arg84Cys	p.R84C	ENST00000356476		84	Cgt/Tgt																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839876	27839876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	96	295	0	ENST00000328488.2:c.218G>T	p.Arg73Leu	p.R73L	ENST00000328488	NM_003533.2	73	cGg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	23	284	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RB1	5925	MSKCC	GRCh37	13	49047527	49047527	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	13	188	0	ENST00000267163.4:c.2520+1G>T		p.X840_splice	ENST00000267163	NM_000321.2	840																																																																															
JAK2	3717	MSKCC	GRCh37	9	5089672	5089672	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0033978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	15	130	0	ENST00000381652.3:c.2572-2A>T		p.X858_splice	ENST00000381652	NM_004972.3	858																																																																															
JAK3	3718	MSKCC	GRCh37	19	17945969	17945969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	12	550	0	ENST00000458235.1:c.1970G>A	p.Arg657Gln	p.R657Q	ENST00000458235	NM_000215.3	657	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023501	27023502	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	133	212	0	ENST00000324856.7:c.608dup	p.His203GlnfsTer197	p.H203Qfs*197	ENST00000324856	NM_006015.4	203	cac/cAac																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463509	25463509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	10	311	0	ENST00000264709.3:c.2173G>A	p.Glu725Lys	p.E725K	ENST00000264709	NM_175629.2	725	Gag/Aag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514631	103514631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	21	229	0	ENST00000355739.4:c.1132G>C	p.Val378Leu	p.V378L	ENST00000355739	NM_000123.3	378	Gta/Cta																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368299	45368299	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	25	284	0	ENST00000262160.6:c.1303C>G	p.Pro435Ala	p.P435A	ENST00000262160	NM_005901.5	435	Cct/Gct																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919027	50919027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	10	422	0	ENST00000440232.2:c.2764G>A	p.Val922Ile	p.V922I	ENST00000440232	NM_002691.3	922	Gtc/Atc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274102	10274102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	399	622	0	ENST00000330684.3:c.167G>A	p.Gly56Asp	p.G56D	ENST00000330684	NM_001134407.1	56	gGc/gAc																																																																														
ATM	472	MSKCC	GRCh37	11	108173754	108173754	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0014304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	112	312	0	ENST00000278616.4:c.5494G>T	p.Glu1832Ter	p.E1832*	ENST00000278616	NM_000051.3	1832	Gaa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518267	187518267	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	170	348	0	ENST00000441802.2:c.12427G>T	p.Glu4143Ter	p.E4143*	ENST00000441802	NM_005245.3	4143	Gag/Tag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584593	52584593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014304-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			841	145	636	0	ENST00000394830.3:c.4420G>A	p.Ala1474Thr	p.A1474T	ENST00000394830	NM_018313.4	1474	Gct/Act																																																																														
PREX2	80243	MSKCC	GRCh37	8	69011988	69011988	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	102	675	0	ENST00000288368.4:c.2625A>C	p.Glu875Asp	p.E875D	ENST00000288368	NM_024870.2	875	gaA/gaC																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589887	212589887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			590	35	563	0	ENST00000342788.4:c.655G>A	p.Gly219Ser	p.G219S	ENST00000342788	NM_005235.2	219	Ggc/Agc																																																																														
MGA	23269	MSKCC	GRCh37	15	42057086	42057086	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0031955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	29	477	0	ENST00000219905.7:c.7747A>C	p.Asn2583His	p.N2583H	ENST00000219905	NM_001164273.1	2583	Aat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577115	7577116	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0031955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	90	718	0	ENST00000269305.4:c.822_823del	p.Ala276LeufsTer29	p.A276Lfs*29	ENST00000269305	NM_001126112.2	274	gtTTgt/gtgt																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866361	42866361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	62	754	1	ENST00000398585.3:c.271C>T	p.Pro91Ser	p.P91S	ENST00000398585	NM_001135099.1	91	Ccg/Tcg																																																																														
APC	324	MSKCC	GRCh37	5	112137010	112137011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGATG			P-0031955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	26	446	0	ENST00000257430.4:c.765_769dup	p.Ala257ValfsTer38	p.A257Vfs*38	ENST00000257430	NM_000038.5	255	cat/caTGATGt																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672376	30672376	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	38	770	0	ENST00000376406.3:c.4584A>C	p.Glu1528Asp	p.E1528D	ENST00000376406	NM_014641.2	1528	gaA/gaC																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126418	5126418	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0031955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	38	375	0	ENST00000381652.3:c.3263T>G	p.Leu1088Ter	p.L1088*	ENST00000381652	NM_004972.3	1088	tTa/tGa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265352	152265352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142712646		P-0033744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	234	300	0	ENST00000206249.3:c.805C>T	p.Arg269Cys	p.R269C	ENST00000206249	NM_000125.3	269	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	345	388	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NSD1	64324	MSKCC	GRCh37	5	176662833	176662833	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	224	302	1	ENST00000439151.2:c.3808G>T	p.Glu1270Ter	p.E1270*	ENST00000439151	NM_022455.4	1270	Gag/Tag																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514440	103514440	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	184	217	0	ENST00000355739.4:c.941T>G	p.Met314Arg	p.M314R	ENST00000355739	NM_000123.3	314	aTg/aGg																																																																														
MGA	23269	MSKCC	GRCh37	15	42040843	42040843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	262	364	1	ENST00000219905.7:c.5221G>T	p.Ala1741Ser	p.A1741S	ENST00000219905	NM_001164273.1	1741	Gct/Tct																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362443	40362443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	368	479	0	ENST00000293328.3:c.1753C>G	p.Leu585Val	p.L585V	ENST00000293328	NM_012448.3	585	Ctc/Gtc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521217	187521217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	413	550	0	ENST00000441802.2:c.11938A>G	p.Ile3980Val	p.I3980V	ENST00000441802	NM_005245.3	3980	Att/Gtt																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683756	162683756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	364	415	0	ENST00000366898.1:c.213G>T	p.Gln71His	p.Q71H	ENST00000366898	NM_004562.2	71	caG/caT																																																																														
PREX2	80243	MSKCC	GRCh37	8	68968143	68968143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	320	412	0	ENST00000288368.4:c.1172G>C	p.Arg391Thr	p.R391T	ENST00000288368	NM_024870.2	391	aGa/aCa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139417618	139417618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	512	565	0	ENST00000277541.6:c.426C>A	p.Asp142Glu	p.D142E	ENST00000277541	NM_017617.3	142	gaC/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033758-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	228	377	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033758-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	227	436	0	ENST00000371953.3:c.395G>A	p.Gly132Asp	p.G132D	ENST00000371953	NM_000314.4	132	gGt/gAt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939263	71939264	+	missense_variant	Missense_Mutation	DNP	TT	TT	AC			P-0033758-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			419	212	595	1	ENST00000298229.2:c.212_213delinsAC	p.Ile71Asn	p.I71N	ENST00000298229	NM_001567.3	71	aTT/aAC																																																																														
SOCS1	8651	MSKCC	GRCh37	16	11348771	11348771	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033758-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	70	335	0	ENST00000332029.2:c.565G>T	p.Glu189Ter	p.E189*	ENST00000332029	NM_003745.1	189	Gag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11269433	11269433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	441	673	0	ENST00000361445.4:c.3737C>T	p.Ala1246Val	p.A1246V	ENST00000361445	NM_004958.3	1246	gCt/gTt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8105964	8105964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	327	559	0	ENST00000346208.3:c.784G>A	p.Glu262Lys	p.E262K	ENST00000346208		262	Gag/Aag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118342667	118342667	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	137	207	1	ENST00000534358.1:c.793C>T	p.Gln265Ter	p.Q265*	ENST00000534358	NM_005933.3	265	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432719	49432719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	503	823	0	ENST00000301067.7:c.8420C>T	p.Ser2807Phe	p.S2807F	ENST00000301067	NM_003482.3	2807	tCc/tTc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112910842	112910842	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	218	456	0	ENST00000351677.2:c.851C>T	p.Pro284Leu	p.P284L	ENST00000351677	NM_002834.3	284	cCc/cTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120642	115120642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	490	779	0	ENST00000257566.3:c.364G>A	p.Glu122Lys	p.E122K	ENST00000257566	NM_016569.3	122	Gag/Aag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678491	88678491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	433	679	1	ENST00000360948.2:c.1045C>T	p.His349Tyr	p.H349Y	ENST00000360948	NM_001012338.2	349	Cat/Tat																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533791	63533791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	428	541	0	ENST00000307078.5:c.1363C>T	p.Pro455Ser	p.P455S	ENST00000307078	NM_004655.3	455	Cca/Tca																																																																														
UPF1	5976	MSKCC	GRCh37	19	18961038	18961038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	400	560	0	ENST00000262803.5:c.616G>T	p.Val206Leu	p.V206L	ENST00000262803	NM_002911.3	206	Gtg/Ttg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561090	9561090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	306	488	0	ENST00000353224.5:c.692C>T	p.Ser231Leu	p.S231L	ENST00000353224	NM_177990.2	231	tCa/tTa																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45651262	45651262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	511	746	0	ENST00000407780.3:c.763G>A	p.Ala255Thr	p.A255T	ENST00000407780	NM_001283052.1	255	Gcc/Acc																																																																														
EP300	2033	MSKCC	GRCh37	22	41572330	41572330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	609	767	1	ENST00000263253.7:c.4859C>T	p.Pro1620Leu	p.P1620L	ENST00000263253	NM_001429.3	1620	cCc/cTc																																																																														
MST1	4485	MSKCC	GRCh37	3	49721812	49721812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs142690032		P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	21	2	0	ENST00000449682.2:c.1951C>T	p.Arg651Ter	p.R651*	ENST00000449682	NM_020998.3	651	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89499484	89499484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	209	538	0	ENST00000336596.2:c.2654C>T	p.Pro885Leu	p.P885L	ENST00000336596	NM_005233.5	885	cCc/cTc																																																																														
KDR	3791	MSKCC	GRCh37	4	55955063	55955063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	338	502	2	ENST00000263923.4:c.3482G>A	p.Gly1161Glu	p.G1161E	ENST00000263923	NM_002253.2	1161	gGa/gAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106158154	106158154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	205	407	0	ENST00000380013.4:c.3055G>T	p.Val1019Leu	p.V1019L	ENST00000380013	NM_001127208.2	1019	Gtg/Ttg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	237	257	1				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112175396	112175396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	176	312	0	ENST00000257430.4:c.4105C>T	p.Pro1369Ser	p.P1369S	ENST00000257430	NM_000038.5	1369	Ccc/Tcc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176666777	176666777	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	172	273	0	ENST00000439151.2:c.4213C>T	p.Gln1405Ter	p.Q1405*	ENST00000439151	NM_022455.4	1405	Caa/Taa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797211	32797211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	604	750	0	ENST00000374899.4:c.1898C>T	p.Ala633Val	p.A633V	ENST00000374899	NM_018833.2	633	gCt/gTt																																																																														
TAP1	6890	MSKCC	GRCh37	6	32814973	32814973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	377	519	1	ENST00000354258.4:c.2092G>A	p.Glu698Lys	p.E698K	ENST00000354258	NM_000593.5	698	Gag/Aag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93967864	93967864	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	320	636	1	ENST00000369303.4:c.2063A>T	p.Gln688Leu	p.Q688L	ENST00000369303	NM_004440.3	688	cAg/cTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93979219	93979219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	139	354	0	ENST00000369303.4:c.1609G>A	p.Glu537Lys	p.E537K	ENST00000369303	NM_004440.3	537	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681040	117681040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	328	570	0	ENST00000368508.3:c.3580G>A	p.Glu1194Lys	p.E1194K	ENST00000368508	NM_002944.2	1194	Gag/Aag																																																																														
LATS1	9113	MSKCC	GRCh37	6	150005438	150005438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	418	601	1	ENST00000253339.5:c.787C>T	p.Pro263Ser	p.P263S	ENST00000253339		263	Cca/Tca																																																																														
INHBA	3624	MSKCC	GRCh37	7	41730008	41730008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	461	654	1	ENST00000242208.4:c.521G>A	p.Arg174His	p.R174H	ENST00000242208	NM_002192.2	174	cGc/cAc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50444401	50444401	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	318	434	1	ENST00000331340.3:c.331C>T	p.Arg111Ter	p.R111*	ENST00000331340	NM_006060.4	111	Cga/Tga																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106512998	106512998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	213	358	0	ENST00000359195.3:c.2012C>T	p.Pro671Leu	p.P671L	ENST00000359195	NM_002649.2	671	cCa/cTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140434507	140434507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2462	286	418	0	ENST00000288602.6:c.2191C>T	p.Pro731Ser	p.P731S	ENST00000288602	NM_004333.4	731	Ccc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	2196	463	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38176411	38176411	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	295	451	0	ENST00000317025.8:c.1855+2T>G		p.X619_splice	ENST00000317025	NM_023034.1	619																																																																															
PREX2	80243	MSKCC	GRCh37	8	69104681	69104681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	417	684	1	ENST00000288368.4:c.4525G>A	p.Gly1509Arg	p.G1509R	ENST00000288368	NM_024870.2	1509	Gga/Aga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0033785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	24	422	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539564	187539564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	15	534	1	ENST00000441802.2:c.8176C>T	p.Arg2726Ter	p.R2726*	ENST00000441802	NM_005245.3	2726	Cga/Tga																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188977	32188977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	58	832	1	ENST00000375023.3:c.577C>T	p.Arg193Cys	p.R193C	ENST00000375023	NM_004557.3	193	Cgt/Tgt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610525	10610525	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	66	948	0	ENST00000171111.5:c.185A>C	p.Gln62Pro	p.Q62P	ENST00000171111	NM_203500.1	62	cAg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	583	910	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	683	514	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624270	89624270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	359	408	0	ENST00000371953.3:c.44G>A	p.Arg15Lys	p.R15K	ENST00000371953	NM_000314.4	15	aGa/aAa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146661	185146661	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	122	545	0	ENST00000265026.3:c.292T>A	p.Ser98Thr	p.S98T	ENST00000265026	NM_004721.4	98	Tct/Act																																																																														
IL10	3586	MSKCC	GRCh37	1	206943239	206943239	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	162	302	0	ENST00000423557.1:c.379C>G	p.His127Asp	p.H127D	ENST00000423557	NM_000572.2	127	Cat/Gat																																																																														
TET1	80312	MSKCC	GRCh37	10	70450669	70450669	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs146039331		P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	43	394	0	ENST00000373644.4:c.5509G>T	p.Ala1837Ser	p.A1837S	ENST00000373644	NM_030625.2	1837	Gct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	134	385	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858233	9858233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	57	468	0	ENST00000330684.3:c.3168G>A	p.Met1056Ile	p.M1056I	ENST00000330684	NM_001134407.1	1056	atG/atA																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965470	15965470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	104	387	0	ENST00000268712.3:c.5336A>G	p.Asn1779Ser	p.N1779S	ENST00000268712	NM_006311.3	1779	aAt/aGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29533299	29533299	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	55	314	0	ENST00000358273.4:c.1302T>A	p.Cys434Ter	p.C434*	ENST00000358273	NM_001042492.2	434	tgT/tgA																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807309	1807309	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	145	551	0	ENST00000260795.2:c.1558T>A	p.Ser520Thr	p.S520T	ENST00000260795		520	Tcg/Acg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520214	176520214	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	137	664	0	ENST00000292408.4:c.1133T>A	p.Leu378Gln	p.L378Q	ENST00000292408	NM_213647.1	378	cTg/cAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411612	63411612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	137	680	0	ENST00000330258.3:c.1555C>A	p.Pro519Thr	p.P519T	ENST00000330258	NM_152424.3	519	Cca/Aca																																																																														
CDH1	999	MSKCC	GRCh37	16	68847282	68847282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	58	466	0	ENST00000261769.5:c.1204G>T	p.Asp402Tyr	p.D402Y	ENST00000261769	NM_004360.3	402	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	77	635	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NOTCH2	4853	MSKCC	GRCh37	1	120508085	120508085	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	23	321	0	ENST00000256646.2:c.1672T>C	p.Cys558Arg	p.C558R	ENST00000256646	NM_024408.3	558	Tgt/Cgt																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022792	12022792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	35	428	0	ENST00000396373.4:c.898G>C	p.Glu300Gln	p.E300Q	ENST00000396373	NM_001987.4	300	Gaa/Caa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81902896	81902896	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	32	383	0	ENST00000359376.3:c.557A>C	p.Lys186Thr	p.K186T	ENST00000359376	NM_002661.3	186	aAg/aCg																																																																														
EP300	2033	MSKCC	GRCh37	22	41537227	41537227	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0033940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	59	345	0	ENST00000263253.7:c.2053+1G>A		p.X685_splice	ENST00000263253	NM_001429.3	685																																																																															
IFNGR1	3459	MSKCC	GRCh37	6	137519589	137519589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	68	428	0	ENST00000367739.4:c.1049C>G	p.Ser350Cys	p.S350C	ENST00000367739	NM_000416.2	350	tCt/tGt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396217	139396217	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	24	665	0	ENST00000277541.6:c.5621T>G	p.Val1874Gly	p.V1874G	ENST00000277541	NM_017617.3	1874	gTc/gGc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48650462	48650462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	40	378	0	ENST00000376670.3:c.432C>A	p.Asp144Glu	p.D144E	ENST00000376670	NM_002049.3	144	gaC/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	20	410	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	13	529	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89445035	89445035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	115	405	0	ENST00000336596.2:c.1355G>T	p.Ser452Ile	p.S452I	ENST00000336596	NM_005233.5	452	aGc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	542	509	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	15	47	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157510914	157510914	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	54	372	0	ENST00000346085.5:c.3689G>T	p.Arg1230Ile	p.R1230I	ENST00000346085	NM_020732.3	1230	aGa/aTa																																																																														
POLD1	5424	MSKCC	GRCh37	19	50920518	50920518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	46	463	0	ENST00000440232.2:c.3210C>G	p.Ile1070Met	p.I1070M	ENST00000440232	NM_002691.3	1070	atC/atG																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372049	55372049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	51	281	0	ENST00000297316.4:c.739G>A	p.Ala247Thr	p.A247T	ENST00000297316	NM_022454.3	247	Gcg/Acg																																																																														
CD79B	974	MSKCC	GRCh37	17	62009619	62009619	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	140	486	0	ENST00000392795.3:c.3G>T	p.Met1?	p.M1?	ENST00000392795	NM_001039933.1	1	atG/atT																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612870	228612870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	123	454	0	ENST00000366696.1:c.157C>T	p.Arg53Cys	p.R53C	ENST00000366696	NM_003493.2	53	Cgc/Tgc																																																																														
AR	367	MSKCC	GRCh37	X	66863241	66863241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	100	456	0	ENST00000374690.3:c.1760C>A	p.Ala587Asp	p.A587D	ENST00000374690	NM_000044.3	587	gCc/gAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29687607	29687607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	177	539	0	ENST00000358273.4:c.8263C>T	p.Leu2755Phe	p.L2755F	ENST00000358273	NM_001042492.2	2755	Ctc/Ttc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789643	3789643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	82	384	1	ENST00000262367.5:c.4216G>T	p.Asp1406Tyr	p.D1406Y	ENST00000262367	NM_004380.2	1406	Gat/Tat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412500	63412500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	68	518	0	ENST00000330258.3:c.667G>T	p.Ala223Ser	p.A223S	ENST00000330258	NM_152424.3	223	Gcc/Tcc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78426050	78426050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	150	463	0	ENST00000370768.2:c.1475G>T	p.Gly492Val	p.G492V	ENST00000370768	NM_003902.3	492	gGa/gTa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115273043	115273043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	79	440	0	ENST00000438362.2:c.1330G>T	p.Asp444Tyr	p.D444Y	ENST00000438362	NM_001242891.1	444	Gat/Tat																																																																														
NUF2	83540	MSKCC	GRCh37	1	163297320	163297320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	114	439	1	ENST00000271452.3:c.166G>T	p.Val56Leu	p.V56L	ENST00000271452	NM_145697.2	56	Gta/Tta																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981145	201981145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	171	589	1	ENST00000359651.3:c.224G>T	p.Trp75Leu	p.W75L	ENST00000359651		75	tGg/tTg																																																																														
PARP1	142	MSKCC	GRCh37	1	226578289	226578289	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	137	463	0	ENST00000366794.5:c.439G>T	p.Glu147Ter	p.E147*	ENST00000366794	NM_001618.3	147	Gag/Tag																																																																														
ATM	472	MSKCC	GRCh37	11	108115582	108115582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	67	430	0	ENST00000278616.4:c.730G>A	p.Ala244Thr	p.A244T	ENST00000278616	NM_000051.3	244	Gct/Act																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245271	46245271	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	123	377	0	ENST00000334344.6:c.3366del	p.Gln1124SerfsTer32	p.Q1124Sfs*32	ENST00000334344	NM_152641.2	1122	gTt/gt																																																																														
RAB35	11021	MSKCC	GRCh37	12	120541629	120541629	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	35	393	1	ENST00000229340.5:c.227+1G>A		p.X76_splice	ENST00000229340	NM_006861.6	76																																																																															
IRS2	8660	MSKCC	GRCh37	13	110434437	110434437	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	65	459	0	ENST00000375856.3:c.3964A>T	p.Ser1322Cys	p.S1322C	ENST00000375856	NM_003749.2	1322	Agc/Tgc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110434482	110434482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	50	399	0	ENST00000375856.3:c.3919G>T	p.Gly1307Trp	p.G1307W	ENST00000375856	NM_003749.2	1307	Ggg/Tgg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30105602	30105602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	96	732	0	ENST00000331968.5:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000331968	NM_002742.2	362	Gaa/Aaa																																																																														
B2M	567	MSKCC	GRCh37	15	45003788	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	123	496	0	ENST00000558401.1:c.45_46del	p.Ser16TrpfsTer40	p.S16Wfs*40	ENST00000558401	NM_004048.2	15	cTT/c																																																																														
CDH1	999	MSKCC	GRCh37	16	68844199	68844199	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	151	521	0	ENST00000261769.5:c.787A>T	p.Thr263Ser	p.T263S	ENST00000261769	NM_004360.3	263	Acc/Tcc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72923730	72923730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	64	533	0	ENST00000268489.5:c.3348G>T	p.Glu1116Asp	p.E1116D	ENST00000268489	NM_006885.3	1116	gaG/gaT																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33428357	33428357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	171	537	0	ENST00000335858.7:c.430G>C	p.Asp144His	p.D144H	ENST00000335858	NM_133629.2	144	Gac/Cac																																																																														
BRCA1	672	MSKCC	GRCh37	17	41209073	41209073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	159	514	1	ENST00000357654.3:c.5273G>A	p.Arg1758Lys	p.R1758K	ENST00000357654	NM_007294.3	1758	aGa/aAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435252	56435252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	192	549	0	ENST00000407977.2:c.1885G>T	p.Ala629Ser	p.A629S	ENST00000407977		629	Gcc/Tcc																																																																														
YES1	7525	MSKCC	GRCh37	18	742925	742925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	30	342	0	ENST00000314574.4:c.1053G>A	p.Met351Ile	p.M351I	ENST00000314574	NM_005433.3	351	atG/atA																																																																														
MALT1	10892	MSKCC	GRCh37	18	56415048	56415048	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	111	357	0	ENST00000348428.3:c.2449G>C	p.Asp817His	p.D817H	ENST00000348428	NM_006785.3	817	Gac/Cac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214706	5214706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	270	522	1	ENST00000357368.4:c.4360G>T	p.Gly1454Cys	p.G1454C	ENST00000357368	NM_002850.3	1454	Ggc/Tgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215604	5215604	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	193	480	0	ENST00000357368.4:c.4099A>G	p.Met1367Val	p.M1367V	ENST00000357368	NM_002850.3	1367	Atg/Gtg																																																																														
CARM1	10498	MSKCC	GRCh37	19	10982542	10982542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	66	105	0	ENST00000327064.4:c.164C>T	p.Ala55Val	p.A55V	ENST00000327064	NM_199141.1	55	gCg/gTg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11144471	11144471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	270	504	0	ENST00000344626.4:c.3803G>C	p.Ser1268Thr	p.S1268T	ENST00000344626	NM_003072.3	1268	aGt/aCt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366933	15366933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	288	661	0	ENST00000263377.2:c.1693G>T	p.Ala565Ser	p.A565S	ENST00000263377	NM_058243.2	565	Gcc/Tcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222928	36222928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	305	726	1	ENST00000222270.7:c.5557C>T	p.Pro1853Ser	p.P1853S	ENST00000222270	NM_014727.1	1853	Cct/Tct																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47601021	47601021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	84	508	0	ENST00000263735.4:c.259G>T	p.Ala87Ser	p.A87S	ENST00000263735	NM_002354.2	87	Gcc/Tcc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659821	227659821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	130	332	0	ENST00000305123.5:c.3634G>A	p.Gly1212Ser	p.G1212S	ENST00000305123	NM_005544.2	1212	Ggc/Agc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560966	9560966	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	124	504	1	ENST00000353224.5:c.816C>A	p.Tyr272Ter	p.Y272*	ENST00000353224	NM_177990.2	272	taC/taA																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309898	30309898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	63	526	0	ENST00000307677.4:c.124G>C	p.Glu42Gln	p.E42Q	ENST00000307677	NM_138578.1	42	Gaa/Caa																																																																														
MLH1	4292	MSKCC	GRCh37	3	37050305	37050305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	34	251	0	ENST00000231790.2:c.454G>T	p.Val152Leu	p.V152L	ENST00000231790	NM_000249.3	152	Gtg/Ttg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71064709	71064709	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	71	334	0	ENST00000318789.4:c.965C>A	p.Ser322Ter	p.S322*	ENST00000318789	NM_032682.5	322	tCa/tAa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134825440	134825440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	51	424	2	ENST00000398015.3:c.956G>T	p.Cys319Phe	p.C319F	ENST00000398015	NM_004441.4	319	tGc/tTc																																																																														
ATR	545	MSKCC	GRCh37	3	142226945	142226945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	106	325	0	ENST00000350721.4:c.4859C>T	p.Thr1620Ile	p.T1620I	ENST00000350721	NM_001184.3	1620	aCt/aTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55962504	55962504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	125	422	0	ENST00000263923.4:c.2620G>T	p.Ala874Ser	p.A874S	ENST00000263923	NM_002253.2	874	Gca/Tca																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143326395	143326395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	50	415	0	ENST00000262992.4:c.219G>T	p.Gln73His	p.Q73H	ENST00000262992	NM_001101669.1	73	caG/caT																																																																														
TERT	7015	MSKCC	GRCh37	5	1264591	1264592	+	missense_variant	Missense_Mutation	DNP	GC	GC	AG			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	70	530	1	ENST00000310581.5:c.2770_2771delinsCT	p.Ala924Leu	p.A924L	ENST00000310581	NM_198253.2	924	GCc/CTc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31435899	31435899	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	139	362	0	ENST00000344624.3:c.3015G>C	p.Gln1005His	p.Q1005H	ENST00000344624		1005	caG/caC																																																																														
IL7R	3575	MSKCC	GRCh37	5	35861056	35861056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	147	363	0	ENST00000303115.3:c.185C>A	p.Pro62Gln	p.P62Q	ENST00000303115	NM_002185.3	62	cCa/cAa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35871289	35871289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	91	270	0	ENST00000303115.3:c.511C>A	p.Gln171Lys	p.Q171K	ENST00000303115	NM_002185.3	171	Cag/Aag																																																																														
PLK2	10769	MSKCC	GRCh37	5	57754357	57754357	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	137	308	0	ENST00000274289.3:c.496-2A>T		p.X166_splice	ENST00000274289	NM_006622.3	166																																																																															
FLT4	2324	MSKCC	GRCh37	5	180046043	180046043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	32	106	1	ENST00000261937.6:c.2828G>T	p.Arg943Leu	p.R943L	ENST00000261937	NM_182925.4	943	cGg/cTg																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673738	30673738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	95	441	0	ENST00000376406.3:c.3222C>G	p.Ile1074Met	p.I1074M	ENST00000376406	NM_014641.2	1074	atC/atG																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32168999	32168999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	101	656	2	ENST00000375023.3:c.4034C>A	p.Ala1345Asp	p.A1345D	ENST00000375023	NM_004557.3	1345	gCc/gAc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287964	33287964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	59	432	0	ENST00000374542.5:c.1289C>T	p.Ala430Val	p.A430V	ENST00000374542	NM_001141970.1	430	gCc/gTc																																																																														
HGF	3082	MSKCC	GRCh37	7	81336627	81336627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	101	245	0	ENST00000222390.5:c.1595C>A	p.Ala532Glu	p.A532E	ENST00000222390	NM_000601.4	532	gCa/gAa																																																																														
HGF	3082	MSKCC	GRCh37	7	81372738	81372739	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	116	344	2	ENST00000222390.5:c.795_796delinsTT	p.Gln266Ter	p.Q266*	ENST00000222390	NM_000601.4	265	ggCCag/ggTTag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508430	106508430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	65	229	0	ENST00000359195.3:c.424C>G	p.Pro142Ala	p.P142A	ENST00000359195	NM_002649.2	142	Ccg/Gcg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931877	68931877	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	60	463	0	ENST00000288368.4:c.307C>G	p.Gln103Glu	p.Q103E	ENST00000288368	NM_024870.2	103	Caa/Gaa																																																																														
RAD21	5885	MSKCC	GRCh37	8	117864194	117864194	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	59	429	0	ENST00000297338.2:c.1463T>G	p.Val488Gly	p.V488G	ENST00000297338	NM_006265.2	488	gTg/gGg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8486044	8486044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	134	537	0	ENST00000356435.5:c.2773C>A	p.Leu925Ile	p.L925I	ENST00000356435		925	Ctt/Att																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8518175	8518179	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTG	CGCTG	TGCT			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	104	433	1	ENST00000356435.5:c.1212_1216delinsAGCA	p.Ser405AlafsTer5	p.S405Afs*5	ENST00000356435		404	ccCAGCGaa/ccAGCAaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	55	147	0	ENST00000304494.5:c.58G>A	p.Ala20Thr	p.A20T	ENST00000304494	NM_000077.4	20	Gcg/Acg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	55	147	0	ENST00000304494.5:c.58G>A	p.Ala20Thr	p.A20T	ENST00000304494	NM_000077.4	20	Gcg/Acg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87339241	87339241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	63	488	0	ENST00000277120.3:c.823G>T	p.Asp275Tyr	p.D275Y	ENST00000277120		275	Gat/Tat																																																																														
TSC1	7248	MSKCC	GRCh37	9	135781208	135781208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	59	539	0	ENST00000298552.3:c.1757G>C	p.Cys586Ser	p.C586S	ENST00000298552	NM_001162426.1	586	tGt/tCt																																																																														
MED12	9968	MSKCC	GRCh37	X	70356169	70356169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	152	671	0	ENST00000374080.3:c.5064G>T	p.Trp1688Cys	p.W1688C	ENST00000374080		1688	tgG/tgT																																																																														
BTK	695	MSKCC	GRCh37	X	100604929	100604929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	26	393	0	ENST00000308731.7:c.1924C>A	p.Pro642Thr	p.P642T	ENST00000308731	NM_000061.2	642	Ccc/Acc																																																																														
XIAP	331	MSKCC	GRCh37	X	123019892	123019892	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	94	601	0	ENST00000355640.3:c.380T>A	p.Phe127Tyr	p.F127Y	ENST00000355640		127	tTt/tAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	26	365	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	108	429	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	19	470	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP63	8626	MSKCC	GRCh37	3	189585728	189585728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	80	345	0	ENST00000264731.3:c.989G>C	p.Arg330Thr	p.R330T	ENST00000264731	NM_003722.4	330	aGa/aCa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25972633	25972633	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	176	345	0	ENST00000435504.4:c.1792C>T	p.Gln598Ter	p.Q598*	ENST00000435504		598	Cag/Tag																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18534789	18534789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	116	374	0	ENST00000266497.5:c.1847G>T	p.Ser616Ile	p.S616I	ENST00000266497		616	aGt/aTt																																																																														
SETD8	387893	MSKCC	GRCh37	12	123879773	123879773	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	40	166	1	ENST00000330479.4:c.469C>G	p.Leu157Val	p.L157V	ENST00000330479	NM_020382.3	157	Ctg/Gtg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435928	110435928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	42	445	0	ENST00000375856.3:c.2473C>T	p.Leu825Phe	p.L825F	ENST00000375856	NM_003749.2	825	Ctc/Ttc																																																																														
CASP8	841	MSKCC	GRCh37	2	202149989	202149989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	309	468	0	ENST00000358485.4:c.1430G>A	p.Gly477Glu	p.G477E	ENST00000358485	NM_001080125.1	477	gGa/gAa																																																																														
EP300	2033	MSKCC	GRCh37	22	41551085	41551085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	89	442	0	ENST00000263253.7:c.3229C>T	p.Gln1077Ter	p.Q1077*	ENST00000263253	NM_001429.3	1077	Caa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187628560	187628560	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	278	544	0	ENST00000441802.2:c.2422del	p.Leu808TyrfsTer24	p.L808Yfs*24	ENST00000441802	NM_005245.3	808	Cta/ta																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696742	176696742	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	138	320	0	ENST00000439151.2:c.5443T>A	p.Tyr1815Asn	p.Y1815N	ENST00000439151	NM_022455.4	1815	Tac/Aac																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323296	31323297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	107	86	0	ENST00000412585.2:c.692_693insC	p.Tyr233LeufsTer21	p.Y233Lfs*21	ENST00000412585	NM_005514.6	231	ggt/ggCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	63	641	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	48	629	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	23	285	0	ENST00000275493.2:c.2281G>T	p.Asp761Tyr	p.D761Y	ENST00000275493	NM_005228.3	761	Gat/Tat																																																																														
RRAGC	64121	MSKCC	GRCh37	1	39321381	39321381	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	68	471	0	ENST00000373001.3:c.640del	p.Ser214AlafsTer4	p.S214Afs*4	ENST00000373001	NM_022157.3	214	Agc/gc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523315	9523315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	56	577	0	ENST00000353224.5:c.1922C>A	p.Pro641His	p.P641H	ENST00000353224	NM_177990.2	641	cCc/cAc																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42852430	42852430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	62	637	0	ENST00000398585.3:c.656G>C	p.Arg219Pro	p.R219P	ENST00000398585	NM_001135099.1	219	cGg/cCg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29091779	29091779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	64	514	0	ENST00000328354.6:c.1178C>T	p.Pro393Leu	p.P393L	ENST00000328354	NM_007194.3	393	cCt/cTt																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127951915	127951925	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGCTCACCTT	GGGCTCACCTT	-			P-0033786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	88	553	0	ENST00000373547.4:c.73_75+8del		p.X25_splice	ENST00000373547	NM_002721.4	25																																																																															
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0033789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	442	637	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
RB1	5925	MSKCC	GRCh37	13	48916804	48916804	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	545	426	0	ENST00000267163.4:c.334G>T	p.Glu112Ter	p.E112*	ENST00000267163	NM_000321.2	112	Gag/Tag																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99467807	99467815	+	inframe_deletion	In_Frame_Del	DEL	GCTAAACCG	GCTAAACCG	-			P-0033789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	49	347	0	ENST00000268035.6:c.2684_2692del	p.Arg895_Asn897del	p.R895_N897del	ENST00000268035	NM_000875.3	892	aaGCTAAACCGg/aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435821	56435822	+	missense_variant	Missense_Mutation	DNP	CT	CT	GG			P-0033789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	115	498	0	ENST00000407977.2:c.1315_1316delinsCC	p.Arg439Pro	p.R439P	ENST00000407977		439	AGg/CCg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17389756	17389756	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	228	793	0	ENST00000359435.4:c.891del	p.Lys297AsnfsTer72	p.K297Nfs*72	ENST00000359435	NM_001033549.1	297	Aaa/aa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998096	169998096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1945	287	622	0	ENST00000295797.4:c.787G>C	p.Gly263Arg	p.G263R	ENST00000295797	NM_002740.5	263	Gga/Cga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589619	67589624	+	inframe_deletion	In_Frame_Del	DEL	GAGAAT	GAGAAT	-			P-0033789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	141	219	0	ENST00000274335.5:c.1382_1387del	p.Arg461_Tyr463delinsHis	p.R461_Y463delinsH	ENST00000274335		461	cGAGAATat/cat																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591010	67591038	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAGTGAAATTATTGACAGTAGAAGAAG	ATCAGTGAAATTATTGACAGTAGAAGAAG	-			P-0033789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	73	205	0	ENST00000274335.5:c.1605_1633del	p.Ser536GlyfsTer10	p.S536Gfs*10	ENST00000274335		535	ATCAGTGAAATTATTGACAGTAGAAGAAGa/a																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207501	29207501	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	41	393	0	ENST00000240100.2:c.295T>A	p.Ser99Thr	p.S99T	ENST00000240100	NM_001394.6	99	Tcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	49	490	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584787	48584787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	13	550	0	ENST00000342988.3:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000342988	NM_005359.5	289	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	32	853	0	ENST00000269305.4:c.737T>A	p.Met246Lys	p.M246K	ENST00000269305	NM_001126112.2	246	aTg/aAg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984364	201984365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	36	703	0	ENST00000359651.3:c.1030dup	p.Arg344ProfsTer127	p.R344Pfs*127	ENST00000359651		343	-/C																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43773136	43773136	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	22	769	0	ENST00000382044.4:c.456A>T	p.Glu152Asp	p.E152D	ENST00000382044	NM_001141980.1	152	gaA/gaT																																																																														
NF1	4763	MSKCC	GRCh37	17	29664465	29664465	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	14	717	0	ENST00000358273.4:c.6507A>T	p.Lys2169Asn	p.K2169N	ENST00000358273	NM_001042492.2	2169	aaA/aaT																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291058	10291058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	16	716	0	ENST00000340748.4:c.413C>G	p.Pro138Arg	p.P138R	ENST00000340748		138	cCc/cGc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505414	25505414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	16	729	0	ENST00000264709.3:c.344C>T	p.Pro115Leu	p.P115L	ENST00000264709	NM_175629.2	115	cCa/cTa																																																																														
ALK	238	MSKCC	GRCh37	2	29473997	29473998	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	15	1005	0	ENST00000389048.3:c.2177_2178delinsAT	p.Trp726Tyr	p.W726Y	ENST00000389048	NM_004304.4	726	tGG/tAT																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138400821	138400822	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	12	384	3	ENST00000289153.2:c.2491_2492delinsTT	p.Gly831Phe	p.G831F	ENST00000289153	NM_006219.2	831	GGt/TTt																																																																														
KDR	3791	MSKCC	GRCh37	4	55980379	55980379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	20	502	0	ENST00000263923.4:c.712G>T	p.Val238Phe	p.V238F	ENST00000263923	NM_002253.2	238	Gtt/Ttt																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99809063	99809063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	23	199	0	ENST00000280892.6:c.322G>T	p.Gly108Cys	p.G108C	ENST00000280892	NM_001130678.1	108	Ggc/Tgc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143045815	143045815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	26	690	1	ENST00000262992.4:c.1819C>T	p.Leu607Phe	p.L607F	ENST00000262992	NM_001101669.1	607	Ctt/Ttt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449799	8449799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	24	704	0	ENST00000356435.5:c.3914C>G	p.Pro1305Arg	p.P1305R	ENST00000356435		1305	cCg/cGg																																																																														
TEK	7010	MSKCC	GRCh37	9	27190572	27190572	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	29	902	1	ENST00000380036.4:c.1373A>T	p.His458Leu	p.H458L	ENST00000380036	NM_000459.3	458	cAt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	35	301	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0033614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	144	607	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831919	72831920	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	178	770	0	ENST00000268489.5:c.4661dup	p.Thr1555HisfsTer18	p.T1555Hfs*18	ENST00000268489	NM_006885.3	1554	ttc/ttTc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260875	16260875	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	331	364	0	ENST00000375759.3:c.8140A>T	p.Thr2714Ser	p.T2714S	ENST00000375759	NM_015001.2	2714	Acg/Tcg																																																																														
RFWD2	64326	MSKCC	GRCh37	1	175996735	175996735	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	695	372	0	ENST00000367669.3:c.1702A>G	p.Arg568Gly	p.R568G	ENST00000367669	NM_022457.5	568	Aga/Gga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118375575	118375575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	199	207	0	ENST00000534358.1:c.8968G>T	p.Gly2990Cys	p.G2990C	ENST00000534358	NM_005933.3	2990	Ggc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428422	49428422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	369	538	0	ENST00000301067.7:c.10383G>T	p.Arg3461Ser	p.R3461S	ENST00000301067	NM_003482.3	3461	agG/agT																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	356	582	0	ENST00000267101.3:c.273G>C	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atC																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	145	392	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
POLE	5426	MSKCC	GRCh37	12	133226451	133226451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	97	358	0	ENST00000320574.5:c.3607G>C	p.Asp1203His	p.D1203H	ENST00000320574	NM_006231.2	1203	Gac/Cac																																																																														
RB1	5925	MSKCC	GRCh37	13	48951140	48951141	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	192	314	0	ENST00000267163.4:c.1302_1303delinsAT	p.Gly435Ter	p.G435*	ENST00000267163	NM_000321.2	434	gtGGga/gtATga																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986947	36986947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	263	442	0	ENST00000354822.5:c.742C>T	p.Arg248Cys	p.R248C	ENST00000354822	NM_001079668.2	248	Cgc/Tgc																																																																														
AKT1	207	MSKCC	GRCh37	14	105242099	105242099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	515	581	1	ENST00000349310.3:c.325G>A	p.Gly109Ser	p.G109S	ENST00000349310	NM_001014432.1	109	Ggc/Agc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472469	88472469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	149	457	0	ENST00000360948.2:c.2086G>C	p.Gly696Arg	p.G696R	ENST00000360948	NM_001012338.2	696	Ggg/Cgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	329	523	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59876531	59876531	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	305	415	0	ENST00000259008.2:c.1270A>T	p.Ser424Cys	p.S424C	ENST00000259008	NM_032043.2	424	Agt/Tgt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216495	2216495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	306	593	0	ENST00000398665.3:c.2139G>C	p.Met713Ile	p.M713I	ENST00000398665	NM_032482.2	713	atG/atC																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097641	11097641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	381	654	0	ENST00000344626.4:c.821G>T	p.Gly274Val	p.G274V	ENST00000344626	NM_003072.3	274	gGc/gTc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17382451	17382451	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	355	503	0	ENST00000359435.4:c.331G>T	p.Glu111Ter	p.E111*	ENST00000359435	NM_001033549.1	111	Gag/Tag																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204735395	204735395	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	73	294	0	ENST00000302823.3:c.196del	p.Ala66ProfsTer6	p.A66Pfs*6	ENST00000302823	NM_005214.4	66	Gcc/cc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660381	227660381	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	46	342	0	ENST00000305123.5:c.3074G>C	p.Ser1025Thr	p.S1025T	ENST00000305123	NM_005544.2	1025	aGc/aCc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793290	242793290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143359677		P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	162	589	0	ENST00000334409.5:c.787G>A	p.Ala263Thr	p.A263T	ENST00000334409	NM_005018.2	263	Gcc/Acc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267198	41267198	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	269	362	0	ENST00000349496.5:c.782A>G	p.Asn261Ser	p.N261S	ENST00000349496	NM_001904.3	261	aAc/aGc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164198	47164198	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	195	342	0	ENST00000409792.3:c.1928A>G	p.His643Arg	p.H643R	ENST00000409792	NM_014159.6	643	cAt/cGt																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	154	193	0	ENST00000318789.4:c.1541G>T	p.Arg514Leu	p.R514L	ENST00000318789	NM_032682.5	514	cGt/cTt																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665360	138665360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	88	577	0	ENST00000330315.3:c.205G>C	p.Glu69Gln	p.E69Q	ENST00000330315	NM_023067.3	69	Gag/Cag																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170015099	170015099	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	176	480	0	ENST00000295797.4:c.1505A>T	p.Lys502Met	p.K502M	ENST00000295797	NM_002740.5	502	aAg/aTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55948138	55948138	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	128	367	0	ENST00000263923.4:c.3833T>A	p.Leu1278Ter	p.L1278*	ENST00000263923	NM_002253.2	1278	tTa/tAa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356150	66356150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	274	432	0	ENST00000273854.3:c.1347C>A	p.Asp449Glu	p.D449E	ENST00000273854	NM_004439.5	449	gaC/gaA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542826	187542826	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	215	376	0	ENST00000441802.2:c.4914A>T	p.Lys1638Asn	p.K1638N	ENST00000441802	NM_005245.3	1638	aaA/aaT																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683656	162683656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	142	376	0	ENST00000366898.1:c.313G>C	p.Val105Leu	p.V105L	ENST00000366898	NM_004562.2	105	Gtg/Ctg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15289853	15289854	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	T			P-0033615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	165	593	0	ENST00000263388.2:c.3700_3701delinsA	p.Cys1234IlefsTer38	p.C1234Ifs*38	ENST00000263388	NM_000435.2	1234	TGt/At																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	97	261	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	112	328	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436009	110436009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	152	538	1	ENST00000375856.3:c.2392G>A	p.Val798Ile	p.V798I	ENST00000375856	NM_003749.2	798	Gtt/Att																																																																														
RET	5979	MSKCC	GRCh37	10	43601863	43601863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	145	488	1	ENST00000355710.3:c.907G>A	p.Val303Met	p.V303M	ENST00000355710	NM_020975.4	303	Gtg/Atg																																																																														
AKT1	207	MSKCC	GRCh37	14	105246482	105246482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	111	472	1	ENST00000349310.3:c.118G>A	p.Glu40Lys	p.E40K	ENST00000349310	NM_001014432.1	40	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	126	334	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	142	169	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																														
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	73	224	1	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	146	470	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056427	26056427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	101	307	0	ENST00000343677.2:c.230A>G	p.Asn77Ser	p.N77S	ENST00000343677	NM_005319.3	77	aAc/aGc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	197	564	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294078	1294078	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	175	709	0	ENST00000310581.5:c.923del	p.Pro308HisfsTer43	p.P308Hfs*43	ENST00000310581	NM_198253.2	308	cCa/ca																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	96	309	1	ENST00000375759.3:c.3154delA	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453398	40453399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs773909918		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	96	626	2	ENST00000345506.4:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000345506	NM_003152.3	365	-/C																																																																														
MTOR	2475	MSKCC	GRCh37	1	11264661	11264661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	45	501	0	ENST00000361445.4:c.3901C>T	p.Arg1301Cys	p.R1301C	ENST00000361445	NM_004958.3	1301	Cgc/Tgc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	160	382	1	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
KDR	3791	MSKCC	GRCh37	4	55984813	55984813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200544155		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	151	403	0	ENST00000263923.4:c.316C>T	p.Arg106Trp	p.R106W	ENST00000263923	NM_002253.2	106	Cgg/Tgg																																																																														
SYK	6850	MSKCC	GRCh37	9	93606273	93606273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	167	505	2	ENST00000375746.1:c.98delG	p.Gly33AlafsTer2	p.G33Afs*2	ENST00000375746	NM_001174167.1	31	caG/ca																																																																														
ATM	472	MSKCC	GRCh37	11	108224583	108224583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	81	268	0	ENST00000278616.4:c.8762C>T	p.Thr2921Met	p.T2921M	ENST00000278616	NM_000051.3	2921	aCg/aTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7125296	7125296	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	276	424	0	ENST00000302850.5:c.3256G>A	p.Val1086Met	p.V1086M	ENST00000302850	NM_000208.2	1086	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971080	21971080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	115	269	0	ENST00000304494.5:c.278C>T	p.Thr93Met	p.T93M	ENST00000304494	NM_000077.4	93	aCg/aTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971080	21971080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	115	269	0	ENST00000304494.5:c.278C>T	p.Thr93Met	p.T93M	ENST00000304494	NM_000077.4	93	aCg/aTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	242	476	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	187	640	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532556	63532556	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	183	568	1	ENST00000307078.5:c.2023delC	p.Arg675ValfsTer14	p.R675Vfs*14	ENST00000307078	NM_004655.3	675	Cgt/gt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	193	538	2	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424970	49424970	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783691		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	170	541	0	ENST00000301067.7:c.13518del	p.Ser4507AlafsTer12	p.S4507Afs*12	ENST00000301067	NM_003482.3	4506	ccC/cc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518197	187518197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	28	307	0	ENST00000441802.2:c.12497C>T	p.Ala4166Val	p.A4166V	ENST00000441802	NM_005245.3	4166	gCg/gTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43707977	43707977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	190	592	0	ENST00000382044.4:c.4904G>A	p.Arg1635His	p.R1635H	ENST00000382044	NM_001141980.1	1635	cGc/cAc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	163	571	1	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440712	56440712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	163	429	0	ENST00000407977.2:c.506C>T	p.Ala169Val	p.A169V	ENST00000407977		169	gCt/gTt																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99181169	99181169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	161	430	0	ENST00000074304.5:c.2110C>T	p.Arg704Cys	p.R704C	ENST00000074304	NM_001134224.1	704	Cgc/Tgc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39617690	39617690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141329274		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	132	343	1	ENST00000262039.4:c.1874C>T	p.Thr625Met	p.T625M	ENST00000262039	NM_002647.2	625	aCg/aTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905959	50905959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201010746		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	197	550	1	ENST00000440232.2:c.931C>T	p.Arg311Cys	p.R311C	ENST00000440232	NM_002691.3	311	Cgc/Tgc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970951	21970951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	40	424	0	ENST00000304494.5:c.407del	p.Gly136AlafsTer10	p.G136Afs*10	ENST00000304494	NM_000077.4	136	gGc/gc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9543659	9543659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	42	360	0	ENST00000353224.5:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000353224	NM_177990.2	499	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140454004	140454004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	75	216	0	ENST00000288602.6:c.1724G>A	p.Arg575Lys	p.R575K	ENST00000288602	NM_004333.4	575	aGa/aAa																																																																														
SRC	6714	MSKCC	GRCh37	20	36012710	36012710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	27	50	0	ENST00000358208.4:c.154G>A	p.Ala52Thr	p.A52T	ENST00000358208		52	Gcg/Acg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257220	16257221	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	154	376	0	ENST00000375759.3:c.4490dup	p.Lys1498GlufsTer4	p.K1498Efs*4	ENST00000375759	NM_015001.2	1495	-/A																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984444	201984444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	118	314	1	ENST00000359651.3:c.1109G>A	p.Arg370Gln	p.R370Q	ENST00000359651		370	cGg/cAg																																																																														
PARP1	142	MSKCC	GRCh37	1	226552824	226552824	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	147	456	0	ENST00000366794.5:c.2537A>G	p.Gln846Arg	p.Q846R	ENST00000366794	NM_001618.3	846	cAg/cGg																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981838	101981838	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	141	460	0	ENST00000282441.5:c.259A>G	p.Arg87Gly	p.R87G	ENST00000282441	NM_001130145.2	87	Agg/Ggg																																																																														
ATM	472	MSKCC	GRCh37	11	108200974	108200974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	108	337	0	ENST00000278616.4:c.7341G>T	p.Leu2447Phe	p.L2447F	ENST00000278616	NM_000051.3	2447	ttG/ttT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426652	49426652	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	100	296	0	ENST00000301067.7:c.11836C>T	p.Gln3946Ter	p.Q3946*	ENST00000301067	NM_003482.3	3946	Caa/Taa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26970451	26970451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	29	111	0	ENST00000381527.3:c.820C>T	p.Pro274Ser	p.P274S	ENST00000381527	NM_001260.1	274	Cct/Tct																																																																														
RB1	5925	MSKCC	GRCh37	13	48923102	48923102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	93	289	0	ENST00000267163.4:c.550G>A	p.Glu184Lys	p.E184K	ENST00000267163	NM_000321.2	184	Gaa/Aaa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436575	110436575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	197	531	0	ENST00000375856.3:c.1826C>T	p.Ala609Val	p.A609V	ENST00000375856	NM_003749.2	609	gCg/gTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817763	3817763	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	188	596	0	ENST00000262367.5:c.3208A>T	p.Thr1070Ser	p.T1070S	ENST00000262367	NM_004380.2	1070	Aca/Tca																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632708	23632708	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	134	406	0	ENST00000261584.4:c.3088A>G	p.Thr1030Ala	p.T1030A	ENST00000261584	NM_024675.3	1030	Act/Gct																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371689	89371691	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	204	523	0	ENST00000301030.4:c.149_151del	p.Glu50del	p.E50del	ENST00000301030	NM_001256183.1	50	gAGGtg/gtg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15967427	15967427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1468999160		P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	129	434	0	ENST00000268712.3:c.5176C>T	p.Arg1726Trp	p.R1726W	ENST00000268712	NM_006311.3	1726	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37865601	37865601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	192	595	0	ENST00000269571.5:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000269571		157	cGg/cAg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40369264	40369264	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	130	462	1	ENST00000293328.3:c.1294del	p.Ala432GlnfsTer4	p.A432Qfs*4	ENST00000293328	NM_012448.3	432	Gca/ca																																																																														
STAT3	6774	MSKCC	GRCh37	17	40500428	40500428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	124	375	0	ENST00000264657.5:c.107C>A	p.Pro36His	p.P36H	ENST00000264657	NM_139276.2	36	cCt/cAt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59761412	59761415	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	161	385	0	ENST00000259008.2:c.2992_2995delAAGA	p.Lys998GlufsTer60	p.K998Efs*60	ENST00000259008	NM_032043.2	998	AAGAga/ga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022455	31022455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	72	220	0	ENST00000375687.4:c.1940C>T	p.Pro647Leu	p.P647L	ENST00000375687	NM_015338.5	647	cCg/cTg																																																																														
NF2	4771	MSKCC	GRCh37	22	30032757	30032757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	102	334	0	ENST00000338641.4:c.132G>T	p.Lys44Asn	p.K44N	ENST00000338641	NM_000268.3	44	aaG/aaT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47139458	47139458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	141	441	0	ENST00000409792.3:c.5129G>A	p.Arg1710His	p.R1710H	ENST00000409792	NM_014159.6	1710	cGt/cAt																																																																														
TP63	8626	MSKCC	GRCh37	3	189582123	189582123	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	101	375	0	ENST00000264731.3:c.682A>G	p.Met228Val	p.M228V	ENST00000264731	NM_003722.4	228	Atg/Gtg																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1955186	1955186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	149	485	0	ENST00000382891.5:c.2273G>A	p.Arg758His	p.R758H	ENST00000382891	NM_133335.3	758	cGc/cAc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55133529	55133529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	107	387	0	ENST00000257290.5:c.833C>A	p.Pro278His	p.P278H	ENST00000257290	NM_006206.4	278	cCc/cAc																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31401568	31401569	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	171	531	0	ENST00000344624.3:c.4094_4095dup	p.Pro1366SerfsTer24	p.P1366Sfs*24	ENST00000344624		1365	-/AG																																																																														
RASA1	5921	MSKCC	GRCh37	5	86629124	86629124	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	82	234	0	ENST00000274376.6:c.869A>G	p.Tyr290Cys	p.Y290C	ENST00000274376	NM_002890.2	290	tAc/tGc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149509478	149509478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	189	568	1	ENST00000261799.4:c.1421G>A	p.Ser474Asn	p.S474N	ENST00000261799	NM_002609.3	474	aGc/aAc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6027062	6027062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	98	342	0	ENST00000265849.7:c.1334G>A	p.Ser445Asn	p.S445N	ENST00000265849	NM_000535.5	445	aGc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0033783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	38	735	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	175	615	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	28	352	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	106	651	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																														
RAD52	5893	MSKCC	GRCh37	12	1025509	1025509	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	36	584	1	ENST00000358495.3:c.865+1G>A		p.X289_splice	ENST00000358495	NM_134424.2	289																																																																															
RICTOR	253260	MSKCC	GRCh37	5	38960627	38960627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	20	202	0	ENST00000357387.3:c.1724G>A	p.Arg575Gln	p.R575Q	ENST00000357387	NM_152756.3	575	cGa/cAa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884353	151884353	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	92	288	0	ENST00000262189.6:c.5002T>G	p.Phe1668Val	p.F1668V	ENST00000262189	NM_170606.2	1668	Ttc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	186	598	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910318	50910318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201804732		P-0033787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	94	695	2	ENST00000440232.2:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000440232	NM_002691.3	525	Cgg/Tgg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691784	30691784	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	128	454	0	ENST00000359013.4:c.361A>T	p.Thr121Ser	p.T121S	ENST00000359013	NM_001024847.2	121	Aca/Tca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	55	474	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699360	47699360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	21	415	0	ENST00000347630.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000347630	NM_001007230.1	50	Gaa/Aaa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134230	2134230	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148527903		P-0033788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	137	502	0	ENST00000219476.3:c.4007C>T	p.Ser1336Leu	p.S1336L	ENST00000219476	NM_000548.3	1336	tCg/tTg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30686293	30686294	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0033788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	17	429	0	ENST00000359013.4:c.227_228delGT	p.Cys76Ter	p.C76*	ENST00000359013	NM_001024847.2	75	cTG/c																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3843499	3843499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	77	548	0	ENST00000262367.5:c.1104G>T	p.Gln368His	p.Q368H	ENST00000262367	NM_004380.2	368	caG/caT																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40457711	40457711	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	263	513	0	ENST00000345506.4:c.1464T>G	p.Phe488Leu	p.F488L	ENST00000345506	NM_003152.3	488	ttT/ttG																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41419941	41419941	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	51	482	0	ENST00000373198.4:c.380A>T	p.Asn127Ile	p.N127I	ENST00000373198	NM_133170.3	127	aAt/aTt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138478171	138478171	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	17	398	0	ENST00000289153.2:c.15C>G	p.Phe5Leu	p.F5L	ENST00000289153	NM_006219.2	5	ttC/ttG																																																																														
ATR	545	MSKCC	GRCh37	3	142257415	142257415	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	17	376	0	ENST00000350721.4:c.3634C>G	p.Leu1212Val	p.L1212V	ENST00000350721	NM_001184.3	1212	Ctc/Gtc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98238377	98238377	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	31	487	0	ENST00000331920.6:c.1667T>A	p.Val556Asp	p.V556D	ENST00000331920	NM_000264.3	556	gTc/gAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139412557	139412591	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACCTGGCCGCACCCCCTGTGCTGGCACCTACCCA	CACCTGGCCGCACCCCCTGTGCTGGCACCTACCCA	-			P-0033788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	1171	418	0	ENST00000277541.6:c.1253_1255+32del		p.X418_splice	ENST00000277541	NM_017617.3	418																																																																															
TET1	80312	MSKCC	GRCh37	10	70332459	70332459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	49	473	0	ENST00000373644.4:c.364G>A	p.Val122Ile	p.V122I	ENST00000373644	NM_030625.2	122	Gta/Ata																																																																														
RHOA	387	MSKCC	GRCh37	3	49405948	49405948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	81	474	0	ENST00000418115.1:c.190G>A	p.Glu64Lys	p.E64K	ENST00000418115	NM_001664.2	64	Gaa/Aaa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046324	69046324	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	268	437	0	ENST00000288368.4:c.3797T>G	p.Val1266Gly	p.V1266G	ENST00000288368	NM_024870.2	1266	gTt/gGt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138478037	138478037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	42	309	0	ENST00000289153.2:c.149C>T	p.Ala50Val	p.A50V	ENST00000289153	NM_006219.2	50	gCt/gTt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748089	41748089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	16	26	0	ENST00000226382.2:c.680C>T	p.Ala227Val	p.A227V	ENST00000226382	NM_003924.3	227	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	192	366	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0033747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	231	499	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0033747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	231	279	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	49030426	49030426	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	146	284	0	ENST00000267163.4:c.1901C>G	p.Ser634Ter	p.S634*	ENST00000267163	NM_000321.2	634	tCa/tGa																																																																														
MGA	23269	MSKCC	GRCh37	15	42019536	42019542	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGTGA	ACTGTGA	-			P-0033747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	162	431	0	ENST00000219905.7:c.3590_3596del	p.Thr1197ArgfsTer21	p.T1197Rfs*21	ENST00000219905	NM_001164273.1	1197	ACTGTGAag/ag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0033749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	90	314	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0033749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	562	532	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220524	123220524	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017630-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	51	314	0	ENST00000218089.9:c.3181A>C	p.Ser1061Arg	p.S1061R	ENST00000218089	NM_001042749.1	1061	Agt/Cgt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	172	621	0	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																														
MET	4233	MSKCC	GRCh37	7	116339565	116339565	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	73	331	0	ENST00000397752.3:c.427C>T	p.Arg143Ter	p.R143*	ENST00000397752	NM_000245.2	143	Cga/Tga																																																																														
PAK7	57144	MSKCC	GRCh37	20	9624783	9624783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	84	418	0	ENST00000353224.5:c.194C>T	p.Ala65Val	p.A65V	ENST00000353224	NM_177990.2	65	gCt/gTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187627933	187627933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	141	658	1	ENST00000441802.2:c.3049T>C	p.Tyr1017His	p.Y1017H	ENST00000441802	NM_005245.3	1017	Tat/Cat																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1902592	1902592	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	250	699	0	ENST00000382891.5:c.211C>G	p.Leu71Val	p.L71V	ENST00000382891	NM_133335.3	71	Ctg/Gtg																																																																														
IRF4	3662	MSKCC	GRCh37	6	407567	407567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	85	382	1	ENST00000380956.4:c.1325G>A	p.Arg442Lys	p.R442K	ENST00000380956	NM_001195286.1	442	aGa/aAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	221	543	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	167	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	45	373	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951994	178951994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	70	521	0	ENST00000263967.3:c.3049G>C	p.Asp1017His	p.D1017H	ENST00000263967	NM_006218.2	1017	Gat/Cat																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81990375	81990375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	68	548	0	ENST00000359376.3:c.3646C>G	p.Leu1216Val	p.L1216V	ENST00000359376	NM_002661.3	1216	Ctg/Gtg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223667	36223667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	78	854	1	ENST00000222270.7:c.6217G>A	p.Glu2073Lys	p.E2073K	ENST00000222270	NM_014727.1	2073	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76845313	76845313	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	160	461	0	ENST00000373344.5:c.6208A>C	p.Ile2070Leu	p.I2070L	ENST00000373344	NM_000489.3	2070	Att/Ctt																																																																														
ATRX	546	MSKCC	GRCh37	X	76889054	76889054	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	120	388	0	ENST00000373344.5:c.4956G>T	p.Glu1652Asp	p.E1652D	ENST00000373344	NM_000489.3	1652	gaG/gaT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	302	427	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	272	575	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	131	278	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	166	414	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742473	17742473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	96	405	0	ENST00000250003.3:c.655G>A	p.Gly219Ser	p.G219S	ENST00000250003	NM_002478.4	219	Ggc/Agc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276256	15276256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	128	543	0	ENST00000263388.2:c.5738C>T	p.Ala1913Val	p.A1913V	ENST00000263388	NM_000435.2	1913	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175551	112175552	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	126	267	0	ENST00000257430.4:c.4260_4261del	p.Ser1421Ter	p.S1421*	ENST00000257430	NM_000038.5	1420	ccCAgt/ccgt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226802	2226803	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	116	453	0	ENST00000398665.3:c.4286_4287dup	p.Ala1430LeufsTer89	p.A1430Lfs*89	ENST00000398665	NM_032482.2	1428	atc/aTCtc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916640	178916669	+	inframe_deletion	In_Frame_Del	DEL	ACTGTGGGGCATCCACTTGATGCCCCCAAG	ACTGTGGGGCATCCACTTGATGCCCCCAAG	-			P-0033643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	226	238	0	ENST00000263967.3:c.28_57del	p.Leu10_Arg19del	p.L10_R19del	ENST00000263967	NM_006218.2	9	gaACTGTGGGGCATCCACTTGATGCCCCCAAGa/gaa																																																																														
APC	324	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011100-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			95	170	283	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																														
NF1	4763	MSKCC	GRCh37	17	29562746	29562746	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011100-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			147	255	405	1	ENST00000358273.4:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000358273	NM_001042492.2	1276	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-			P-0011100-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			310	155	365	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																														
NF2	4771	MSKCC	GRCh37	22	30070839	30070840	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0011100-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			101	227	339	0	ENST00000338641.4:c.1355_1356del	p.Asp452AlafsTer42	p.D452Afs*42	ENST00000338641	NM_000268.3	452	gAT/g																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589143	67589150	+	frameshift_variant	Frame_Shift_Del	DEL	TAACAAAT	TAACAAAT	-			P-0031172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	12	216	0	ENST00000274335.5:c.1134_1141del	p.Lys379GlnfsTer13	p.K379Qfs*13	ENST00000274335		377	aaTAACAAATta/aata																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0033662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	25	625	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579476	7579476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	31	674	0	ENST00000269305.4:c.211C>T	p.Pro71Ser	p.P71S	ENST00000269305	NM_001126112.2	71	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579476	7579477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	404	653	0	ENST00000269305.4:c.210dup	p.Pro71SerfsTer78	p.P71Sfs*78	ENST00000269305	NM_001126112.2	70	-/T																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256572	115256572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	90	499	0	ENST00000369535.4:c.139G>C	p.Asp47His	p.D47H	ENST00000369535	NM_002524.4	47	Gat/Cat																																																																														
RB1	5925	MSKCC	GRCh37	13	48878186	48878186	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	57	44	0	ENST00000267163.4:c.137+1G>T		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																															
TSHR	7253	MSKCC	GRCh37	14	81610291	81610291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	144	401	0	ENST00000298171.2:c.1889T>C	p.Ile630Thr	p.I630T	ENST00000298171	NM_000369.2	630	aTc/aCc																																																																														
PMAIP1	5366	MSKCC	GRCh37	18	57567452	57567452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	301	181	0	ENST00000316660.6:c.43G>T	p.Ala15Ser	p.A15S	ENST00000316660	NM_021127.2	15	Gcg/Tcg																																																																														
BCL2	596	MSKCC	GRCh37	18	60795976	60795976	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	215	353	0	ENST00000333681.4:c.602T>G	p.Leu201Arg	p.L201R	ENST00000333681		201	cTg/cGg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216448	2216448	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	143	623	0	ENST00000398665.3:c.2092A>C	p.Lys698Gln	p.K698Q	ENST00000398665	NM_032482.2	698	Aag/Cag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25966219	25966219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	287	593	0	ENST00000435504.4:c.2987C>T	p.Thr996Ile	p.T996I	ENST00000435504		996	aCc/aTc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524185	187524185	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	85	326	0	ENST00000441802.2:c.11354del	p.Gly3785GlufsTer48	p.G3785Efs*48	ENST00000441802	NM_005245.3	3785	gGa/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	47	449	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0033680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	62	419	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023253	27023269	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCGGCGGCGGCGGT	CGCCCGGCGGCGGCGGT	-			P-0033680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	39	73	0	ENST00000324856.7:c.359_375del	p.Pro120ArgfsTer274	p.P120Rfs*274	ENST00000324856	NM_006015.4	120	cCGCCCGGCGGCGGCGGT/c																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0033683-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	17	361	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033683-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			529	47	577	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
RARA	5914	MSKCC	GRCh37	17	38510620	38510620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033683-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	25	544	0	ENST00000254066.5:c.874C>G	p.Leu292Val	p.L292V	ENST00000254066	NM_000964.3	292	Ctg/Gtg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399350	139399350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033683-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	17	578	1	ENST00000277541.6:c.4793G>A	p.Arg1598His	p.R1598H	ENST00000277541	NM_017617.3	1598	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	60	519	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0033692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	234	451	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37879854	37879854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	268	576	0	ENST00000269571.5:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000269571		717	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76845334	76845334	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	155	362	0	ENST00000373344.5:c.6187G>T	p.Glu2063Ter	p.E2063*	ENST00000373344	NM_000489.3	2063	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0033693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	200	679	4	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53227000	53227000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	56	727	0	ENST00000375401.3:c.2575C>T	p.Gln859Ter	p.Q859*	ENST00000375401	NM_004187.3	859	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013721-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			757	45	689	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013721-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			984	43	843	1	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013721-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	11	323	1	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																														
BCL6	604	MSKCC	GRCh37	3	187442854	187442854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013721-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	19	478	0	ENST00000232014.4:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000232014	NM_001130845.1	618	Cgt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575127	48575127	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013721-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			759	61	486	0	ENST00000342988.3:c.321del	p.Asn107LysfsTer3	p.N107Kfs*3	ENST00000342988	NM_005359.5	107	aaT/aa																																																																														
FYN	2534	MSKCC	GRCh37	6	112020748	112020748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013721-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	33	456	0	ENST00000368678.4:c.823G>A	p.Gly275Ser	p.G275S	ENST00000368678		275	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018394-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			58	76	342	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018394-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			73	94	638	1	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																														
CDH1	999	MSKCC	GRCh37	16	68842745	68842751	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATACACT	ATACACT	-			P-0018394-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			22	57	430	0	ENST00000261769.5:c.681_687del	p.Tyr228SerfsTer20	p.Y228Sfs*20	ENST00000261769	NM_004360.3	227	acATACACT/ac																																																																														
ACVR1	90	MSKCC	GRCh37	2	158634811	158634812	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0018394-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			59	23	287	0	ENST00000263640.3:c.374_375delinsTT	p.Gly125Val	p.G125V	ENST00000263640	NM_001105.4	125	gGC/gTT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	313	710	1	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TCT			P-0019856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	632	569	1	ENST00000275493.2:c.2303_2305delinsTCT	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTCTtg																																																																														
KDR	3791	MSKCC	GRCh37	4	55976733	55976733	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0019856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	198	606	0	ENST00000263923.4:c.1092G>C	p.Trp364Cys	p.W364C	ENST00000263923	NM_002253.2	364	tgG/tgC																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246858	41246858	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	83	476	0	ENST00000357654.3:c.690G>C	p.Glu230Asp	p.E230D	ENST00000357654	NM_007294.3	230	gaG/gaC																																																																														
CIC	23152	MSKCC	GRCh37	19	42794794	42794794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			671	72	625	0	ENST00000575354.2:c.1874G>A	p.Gly625Glu	p.G625E	ENST00000575354	NM_015125.3	625	gGa/gAa																																																																														
BARD1	580	MSKCC	GRCh37	2	215595173	215595173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	107	576	1	ENST00000260947.4:c.1963G>A	p.Glu655Lys	p.E655K	ENST00000260947	NM_000465.2	655	Gaa/Aaa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30675392	30675392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			587	100	641	0	ENST00000376406.3:c.2964C>A	p.Ser988Arg	p.S988R	ENST00000376406	NM_014641.2	988	agC/agA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023770-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	226	645	1	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060782	38060784	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0023770-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			928	458	1649	0	ENST00000250448.2:c.1205_1207del	p.Ile402del	p.I402del	ENST00000250448	NM_004496.3	402	aTCAac/aac																																																																														
CTCF	10664	MSKCC	GRCh37	16	67650654	67650654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023770-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	30	516	0	ENST00000264010.4:c.959G>A	p.Arg320His	p.R320H	ENST00000264010	NM_006565.3	320	cGt/cAt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8111494	8111495	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGGAGG			P-0032553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	119	376	1	ENST00000346208.3:c.981_987dupCTGGAGG	p.Arg330LeufsTer24	p.R330Lfs*24	ENST00000346208		327	ctc/ctCTGGAGGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057945	27057958	+	frameshift_variant	Frame_Shift_Del	DEL	CTCACAGCCACAGG	CTCACAGCCACAGG	-			P-0032553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	125	498	0	ENST00000324856.7:c.1657_1670del	p.Gln553ValfsTer65	p.Q553Vfs*65	ENST00000324856	NM_006015.4	551	taCTCACAGCCACAGGct/tact																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12032567	12032567	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	78	304	0	ENST00000353533.5:c.1003G>T	p.Glu335Ter	p.E335*	ENST00000353533	NM_003010.3	335	Gaa/Taa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923045	44923048	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0033316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	72	252	0	ENST00000377967.4:c.1909_1912del	p.Ser637ThrfsTer53	p.S637Tfs*53	ENST00000377967	NM_021140.2	636	CTATct/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	83	504	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	47	451	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	23	371	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	154	547	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	18	359	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509249	106509249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	49	532	0	ENST00000359195.3:c.1243G>C	p.Glu415Gln	p.E415Q	ENST00000359195	NM_002649.2	415	Gag/Cag																																																																														
RHOA	387	MSKCC	GRCh37	3	49405978	49405978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	92	442	0	ENST00000418115.1:c.160G>A	p.Glu54Lys	p.E54K	ENST00000418115	NM_001664.2	54	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347299	89347299	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	45	552	0	ENST00000301030.4:c.5651C>G	p.Ser1884Ter	p.S1884*	ENST00000301030	NM_001256183.1	1884	tCa/tGa																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858351	27858351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	35	541	0	ENST00000359303.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000359303	NM_003535.2	74	Gaa/Aaa																																																																														
NUF2	83540	MSKCC	GRCh37	1	163306627	163306627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	35	246	0	ENST00000271452.3:c.424C>G	p.Leu142Val	p.L142V	ENST00000271452	NM_145697.2	142	Ctt/Gtt																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281040	49281040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	22	561	0	ENST00000282018.3:c.87G>T	p.Arg29Ser	p.R29S	ENST00000282018	NM_020377.2	29	agG/agT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348277	89348277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	99	958	0	ENST00000301030.4:c.4673C>G	p.Ser1558Cys	p.S1558C	ENST00000301030	NM_001256183.1	1558	tCc/tGc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213896	36213896	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	54	584	0	ENST00000222270.7:c.2723-1G>A		p.X908_splice	ENST00000222270	NM_014727.1	908																																																																															
PDGFRB	5159	MSKCC	GRCh37	5	149513233	149513233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	66	627	0	ENST00000261799.4:c.850G>A	p.Glu284Lys	p.E284K	ENST00000261799	NM_002609.3	284	Gaa/Aaa																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858480	27858480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	21	372	0	ENST00000359303.2:c.91C>G	p.Pro31Ala	p.P31A	ENST00000359303	NM_003535.2	31	Cca/Gca																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860875	151860875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	31	354	0	ENST00000262189.6:c.9787G>A	p.Glu3263Lys	p.E3263K	ENST00000262189	NM_170606.2	3263	Gaa/Aaa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028871	47028871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	31	520	0	ENST00000329236.7:c.175G>A	p.Asp59Asn	p.D59N	ENST00000329236	NM_001204466.1	59	Gac/Aac																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222759	53222759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	109	887	1	ENST00000375401.3:c.4177G>A	p.Glu1393Lys	p.E1393K	ENST00000375401	NM_004187.3	1393	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	415	622	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	171	557	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31019279	31019279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	151	411	0	ENST00000375687.4:c.874G>C	p.Asp292His	p.D292H	ENST00000375687	NM_015338.5	292	Gac/Cac																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30134479	30134479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	180	406	0	ENST00000263025.4:c.52G>A	p.Glu18Lys	p.E18K	ENST00000263025	NM_002746.2	18	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72845926	72845926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	136	463	3	ENST00000268489.5:c.3541C>T	p.Gln1181Ter	p.Q1181*	ENST00000268489	NM_006885.3	1181	Caa/Taa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610405	10610405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	157	689	0	ENST00000171111.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000171111	NM_203500.1	102	tCa/tTa																																																																														
STK11	6794	MSKCC	GRCh37	19	1221260	1221260	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	259	646	0	ENST00000326873.7:c.783C>G	p.Tyr261Ter	p.Y261*	ENST00000326873	NM_000455.4	261	taC/taG																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17742468	17742468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	79	472	0	ENST00000250003.3:c.650C>A	p.Pro217Gln	p.P217Q	ENST00000250003	NM_002478.4	217	cCg/cAg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244426	41244426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	117	637	0	ENST00000357654.3:c.3122C>T	p.Ser1041Leu	p.S1041L	ENST00000357654	NM_007294.3	1041	tCa/tTa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71008510	71008510	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	78	321	0	ENST00000318789.4:c.1922A>T	p.Asp641Val	p.D641V	ENST00000318789	NM_032682.5	641	gAt/gTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140439614	140439614	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	120	566	0	ENST00000288602.6:c.2125C>A	p.Gln709Lys	p.Q709K	ENST00000288602	NM_004333.4	709	Caa/Aaa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517995	8517995	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	29	393	0	ENST00000356435.5:c.1396T>A	p.Trp466Arg	p.W466R	ENST00000356435		466	Tgg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	175	662	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	123	416	0	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2193747	2193747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	127	656	0	ENST00000398665.3:c.553G>A	p.Val185Ile	p.V185I	ENST00000398665	NM_032482.2	185	Gtc/Atc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295338	1295338	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0033328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	59	345	0				ENST00000310581	NM_198253.2																																																																																
EPHB1	2047	MSKCC	GRCh37	3	134920370	134920370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	125	497	2	ENST00000398015.3:c.2185G>A	p.Ala729Thr	p.A729T	ENST00000398015	NM_004441.4	729	Gct/Act																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99156050	99156050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	118	613	0	ENST00000074304.5:c.730C>T	p.Arg244Trp	p.R244W	ENST00000074304	NM_001134224.1	244	Cgg/Tgg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2220637	2220637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	170	662	0	ENST00000326181.6:c.254G>A	p.Arg85His	p.R85H	ENST00000326181	NM_032271.2	85	cGc/cAc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10244971	10244971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	95	485	0	ENST00000340748.4:c.4738G>A	p.Val1580Met	p.V1580M	ENST00000340748		1580	Gtg/Atg																																																																														
SRC	6714	MSKCC	GRCh37	20	36031609	36031609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	152	702	2	ENST00000358208.4:c.1438C>T	p.Arg480Trp	p.R480W	ENST00000358208		480	Cgg/Tgg																																																																														
MST1R	4486	MSKCC	GRCh37	3	49927456	49927456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	127	664	1	ENST00000296474.3:c.3848G>A	p.Arg1283Gln	p.R1283Q	ENST00000296474	NM_002447.2	1283	cGg/cAg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631130	176631130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	100	396	0	ENST00000439151.2:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000439151	NM_022455.4	358	cGg/cAg																																																																														
TAP1	6890	MSKCC	GRCh37	6	32819912	32819912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	171	668	1	ENST00000354258.4:c.998C>T	p.Thr333Met	p.T333M	ENST00000354258	NM_000593.5	333	aCg/aTg																																																																														
LYN	4067	MSKCC	GRCh37	8	56864653	56864653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	119	534	0	ENST00000519728.1:c.616G>A	p.Asp206Asn	p.D206N	ENST00000519728	NM_002350.3	206	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	124	421	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	151	479	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	223	668	2	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726655	88726655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	118	417	0	ENST00000360948.2:c.389G>A	p.Arg130His	p.R130H	ENST00000360948	NM_001012338.2	130	cGt/cAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591821	48591821	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	122	452	0	ENST00000342988.3:c.984C>A	p.Tyr328Ter	p.Y328*	ENST00000342988	NM_005359.5	328	taC/taA																																																																														
MDM4	4194	MSKCC	GRCh37	1	204511944	204511945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	93	322	0	ENST00000367182.3:c.547dup	p.Thr183AsnfsTer3	p.T183Nfs*3	ENST00000367182	NM_001278516.1	182	gaa/gAaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	28	351	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	24	278	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	750	542	0	ENST00000269305.4:c.764T>A	p.Ile255Asn	p.I255N	ENST00000269305	NM_001126112.2	255	aTc/aAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347546	89347546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	57	774	0	ENST00000301030.4:c.5404G>A	p.Glu1802Lys	p.E1802K	ENST00000301030	NM_001256183.1	1802	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579317	7579317	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	79	655	0	ENST00000269305.4:c.370T>G	p.Cys124Gly	p.C124G	ENST00000269305	NM_001126112.2	124	Tgc/Ggc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89348354	89348354	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1673	104	1416	0	ENST00000301030.4:c.4596G>T	p.Glu1532Asp	p.E1532D	ENST00000301030	NM_001256183.1	1532	gaG/gaT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347750	89347750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	48	820	1	ENST00000301030.4:c.5200G>A	p.Asp1734Asn	p.D1734N	ENST00000301030	NM_001256183.1	1734	Gac/Aac																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794506	242794506	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	71	923	0	ENST00000334409.5:c.437-1G>A		p.X146_splice	ENST00000334409	NM_005018.2	146																																																																															
MEN1	4221	MSKCC	GRCh37	11	64575551	64575551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	105	557	0	ENST00000337652.1:c.481G>A	p.Gly161Ser	p.G161S	ENST00000337652	NM_130803.2	161	Ggt/Agt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794935	242794935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1384	93	1274	0	ENST00000334409.5:c.274G>A	p.Asp92Asn	p.D92N	ENST00000334409	NM_005018.2	92	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	80	388	0				ENST00000310581	NM_198253.2																																																																																
ELF3	1999	MSKCC	GRCh37	1	201981528	201981529	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	369	1314	0	ENST00000359651.3:c.443dup	p.Met148IlefsTer13	p.M148Ifs*13	ENST00000359651		148	atg/aTtg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110437499	110437499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1418	105	1059	1	ENST00000375856.3:c.902G>A	p.Arg301Gln	p.R301Q	ENST00000375856	NM_003749.2	301	cGg/cAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786045	3786048	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	AA			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	95	981	2	ENST00000262367.5:c.4717_4720delinsTT	p.Glu1573PhefsTer3	p.E1573Ffs*3	ENST00000262367	NM_004380.2	1573	GAAAcc/TTcc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346796	89346796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	32	422	0	ENST00000301030.4:c.6154G>C	p.Glu2052Gln	p.E2052Q	ENST00000301030	NM_001256183.1	2052	Gag/Cag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347533	89347533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	59	753	0	ENST00000301030.4:c.5417G>C	p.Gly1806Ala	p.G1806A	ENST00000301030	NM_001256183.1	1806	gGa/gCa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347859	89347859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	57	873	1	ENST00000301030.4:c.5091G>T	p.Gln1697His	p.Q1697H	ENST00000301030	NM_001256183.1	1697	caG/caT																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349586	89349586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1547	91	1190	0	ENST00000301030.4:c.3364G>A	p.Glu1122Lys	p.E1122K	ENST00000301030	NM_001256183.1	1122	Gag/Aag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349589	89349589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1536	92	1187	0	ENST00000301030.4:c.3361G>A	p.Asp1121Asn	p.D1121N	ENST00000301030	NM_001256183.1	1121	Gat/Aat																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349649	89349649	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1568	108	1152	0	ENST00000301030.4:c.3301G>C	p.Glu1101Gln	p.E1101Q	ENST00000301030	NM_001256183.1	1101	Gaa/Caa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350229	89350229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1722	113	1384	0	ENST00000301030.4:c.2721G>C	p.Lys907Asn	p.K907N	ENST00000301030	NM_001256183.1	907	aaG/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	105	509	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	119	676	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	150	814	0	ENST00000269305.4:c.332T>G	p.Leu111Arg	p.L111R	ENST00000269305	NM_001126112.2	111	cTg/cGg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971132	21971133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	139	691	0	ENST00000304494.5:c.225dupC	p.Ala76ArgfsTer44	p.A76Rfs*44	ENST00000304494	NM_000077.4	75	-/C																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971132	21971133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	139	691	0	ENST00000304494.5:c.225dupC	p.Ala76ArgfsTer44	p.A76Rfs*44	ENST00000304494	NM_000077.4	75	-/C																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971132	21971133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	139	691	0	ENST00000304494.5:c.225dupC	p.Ala76ArgfsTer44	p.A76Rfs*44	ENST00000304494	NM_000077.4	75	-/C																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9778759	9778759	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	299	693	0	ENST00000377346.4:c.1028T>C	p.Val343Ala	p.V343A	ENST00000377346	NM_005026.3	343	gTg/gCg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11313919	11313919	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	428	825	0	ENST00000361445.4:c.817C>T	p.Arg273Ter	p.R273*	ENST00000361445	NM_004958.3	273	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106078	27106078	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	266	510	0	ENST00000324856.7:c.5693delC	p.Pro1898HisfsTer25	p.P1898Hfs*25	ENST00000324856	NM_006015.4	1897	Ccc/cc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36938276	36938276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	457	976	1	ENST00000361632.4:c.685C>T	p.Pro229Ser	p.P229S	ENST00000361632		229	Ccc/Tcc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65313339	65313339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	351	543	0	ENST00000342505.4:c.1775G>A	p.Gly592Asp	p.G592D	ENST00000342505	NM_002227.2	592	gGc/gAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325846	65325846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	272	450	0	ENST00000342505.4:c.1276G>A	p.Asp426Asn	p.D426N	ENST00000342505	NM_002227.2	426	Gac/Aac																																																																														
RET	5979	MSKCC	GRCh37	10	43617398	43617398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	251	522	0	ENST00000355710.3:c.2735G>A	p.Arg912Gln	p.R912Q	ENST00000355710	NM_020975.4	912	cGg/cAg																																																																														
TET1	80312	MSKCC	GRCh37	10	70332820	70332820	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	367	684	1	ENST00000373644.4:c.725T>A	p.Met242Lys	p.M242K	ENST00000373644	NM_030625.2	242	aTg/aAg																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138055	64138055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	514	1173	0	ENST00000334205.4:c.1978G>A	p.Ala660Thr	p.A660T	ENST00000334205	NM_003942.2	660	Gcc/Acc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	110	467	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
ATM	472	MSKCC	GRCh37	11	108186743	108186743	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3218670		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	213	409	1	ENST00000278616.4:c.6101G>A	p.Arg2034Gln	p.R2034Q	ENST00000278616	NM_000051.3	2034	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	350	720	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498139	498139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	319	498	0	ENST00000399788.2:c.119G>A	p.Arg40Gln	p.R40Q	ENST00000399788	NM_001042603.1	40	cGg/cAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18473957	18473957	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	125	374	0	ENST00000266497.5:c.1199A>C	p.Lys400Thr	p.K400T	ENST00000266497		400	aAa/aCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	293	555	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	257	489	1	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446710	49446710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	272	537	0	ENST00000301067.7:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000301067	NM_003482.3	367	cCg/cTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489534	56489534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	311	616	1	ENST00000267101.3:c.1999C>T	p.Arg667Cys	p.R667C	ENST00000267101	NM_001982.3	667	Cgt/Tgt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	451	973	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
MSI1	4440	MSKCC	GRCh37	12	120805863	120805863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	586	1205	3	ENST00000257552.2:c.215C>T	p.Ala72Val	p.A72V	ENST00000257552	NM_002442.3	72	gCg/gTg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432064	121432064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	586	1096	2	ENST00000257555.6:c.811C>T	p.Arg271Trp	p.R271W	ENST00000257555		271	Cgg/Tgg																																																																														
POLE	5426	MSKCC	GRCh37	12	133244145	133244145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	366	685	0	ENST00000320574.5:c.2263G>A	p.Val755Met	p.V755M	ENST00000320574	NM_006231.2	755	Gtg/Atg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562607	21562607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	215	456	1	ENST00000382592.4:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000382592	NM_014572.2	438	Gcg/Acg																																																																														
RB1	5925	MSKCC	GRCh37	13	48921986	48921986	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	199	351	0	ENST00000267163.4:c.526C>T	p.Gln176Ter	p.Q176*	ENST00000267163	NM_000321.2	176	Caa/Taa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73337651	73337651	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	168	280	0	ENST00000377767.4:c.2065C>T	p.Arg689Ter	p.R689*	ENST00000377767	NM_014953.3	689	Cga/Tga																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	172	272	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95566251	95566251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	277	493	0	ENST00000343455.3:c.4072C>T	p.Arg1358Cys	p.R1358C	ENST00000343455	NM_177438.2	1358	Cgc/Tgc																																																																														
MGA	23269	MSKCC	GRCh37	15	42028430	42028430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	25	416	0	ENST00000219905.7:c.3968A>G	p.Tyr1323Cys	p.Y1323C	ENST00000219905	NM_001164273.1	1323	tAt/tGt																																																																														
MGA	23269	MSKCC	GRCh37	15	42032393	42032393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	291	457	0	ENST00000219905.7:c.4577G>A	p.Arg1526Gln	p.R1526Q	ENST00000219905	NM_001164273.1	1526	cGg/cAg																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88690584	88690584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	197	409	1	ENST00000360948.2:c.446C>T	p.Thr149Met	p.T149M	ENST00000360948	NM_001012338.2	149	aCg/aTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99250908	99250908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	346	608	0	ENST00000268035.6:c.212G>A	p.Arg71His	p.R71H	ENST00000268035	NM_000875.3	71	cGc/cAc																																																																														
SLX4	84464	MSKCC	GRCh37	16	3652269	3652269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	403	835	0	ENST00000294008.3:c.800C>T	p.Ala267Val	p.A267V	ENST00000294008	NM_032444.2	267	gCg/gTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779810	3779810	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	513	1165	0	ENST00000262367.5:c.5238del	p.Leu1747TrpfsTer24	p.L1747Wfs*24	ENST00000262367	NM_004380.2	1746	ggG/gg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274101	10274102	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	377	911	0	ENST00000330684.3:c.167dup	p.Glu58ArgfsTer80	p.E58Rfs*80	ENST00000330684	NM_001134407.1	56	ggc/ggGc																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14024573	14024573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	222	392	0	ENST00000311895.7:c.799C>T	p.Arg267Cys	p.R267C	ENST00000311895	NM_005236.2	267	Cgc/Tgc																																																																														
MAPK3	5595	MSKCC	GRCh37	16	30128084	30128084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	519	957	2	ENST00000263025.4:c.1045G>A	p.Ala349Thr	p.A349T	ENST00000263025	NM_002746.2	349	Gcc/Acc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829974	72829974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	447	933	2	ENST00000268489.5:c.6607C>T	p.Arg2203Cys	p.R2203C	ENST00000268489	NM_006885.3	2203	Cgt/Tgt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992274	72992274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	579	1277	2	ENST00000268489.5:c.1771G>A	p.Ala591Thr	p.A591T	ENST00000268489	NM_006885.3	591	Gct/Act																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993509	72993509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	351	850	5	ENST00000268489.5:c.536delG	p.Gly179AlafsTer22	p.G179Afs*22	ENST00000268489	NM_006885.3	179	gGc/gc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341353	89341353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	464	947	2	ENST00000301030.4:c.7582G>A	p.Val2528Ile	p.V2528I	ENST00000301030	NM_001256183.1	2528	Gta/Ata																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349526	89349526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	546	1109	0	ENST00000301030.4:c.3424G>A	p.Asp1142Asn	p.D1142N	ENST00000301030	NM_001256183.1	1142	Gac/Aac																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108238	8108238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	372	799	0	ENST00000585124.1:c.986C>T	p.Ala329Val	p.A329V	ENST00000585124	NM_004217.3	329	gCc/gTc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	231	683	3	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
FLCN	201163	MSKCC	GRCh37	17	17131402	17131402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	437	825	2	ENST00000285071.4:c.50G>A	p.Arg17His	p.R17H	ENST00000285071	NM_144997.5	17	cGc/cAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29654671	29654671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	187	309	0	ENST00000358273.4:c.5423C>T	p.Thr1808Met	p.T1808M	ENST00000358273	NM_001042492.2	1808	aCg/aTg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37665977	37665977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	248	455	0	ENST00000447079.4:c.2629G>T	p.Asp877Tyr	p.D877Y	ENST00000447079	NM_015083.1	877	Gat/Tat																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489585	40489585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	362	675	0	ENST00000264657.5:c.665C>T	p.Ala222Val	p.A222V	ENST00000264657	NM_139276.2	222	gCg/gTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244679	41244679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	308	1020	0	ENST00000357654.3:c.2869C>T	p.Gln957Ter	p.Q957*	ENST00000357654	NM_007294.3	957	Cag/Tag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	405	803	10	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492686	56492686	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	281	495	1	ENST00000407977.2:c.252+1G>A		p.X84_splice	ENST00000407977		84																																																																															
PIK3C3	5289	MSKCC	GRCh37	18	39609313	39609313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	207	359	0	ENST00000262039.4:c.1615C>T	p.Arg539Cys	p.R539C	ENST00000262039	NM_002647.2	539	Cgt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	276	546	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
BCL2	596	MSKCC	GRCh37	18	60985569	60985569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	277	470	0	ENST00000333681.4:c.331G>A	p.Asp111Asn	p.D111N	ENST00000333681		111	Gac/Aac																																																																														
MAP2K2	5605	MSKCC	GRCh37	19	4099265	4099265	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150369301		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	561	1167	1	ENST00000262948.5:c.853G>A	p.Asp285Asn	p.D285N	ENST00000262948	NM_030662.3	285	Gac/Aac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215345	5215345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	328	748	0	ENST00000357368.4:c.4273G>A	p.Val1425Ile	p.V1425I	ENST00000357368	NM_002850.3	1425	Gtc/Atc																																																																														
INSR	3643	MSKCC	GRCh37	19	7152776	7152776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	485	818	0	ENST00000302850.5:c.2192C>T	p.Thr731Met	p.T731M	ENST00000302850	NM_000208.2	731	aCg/aTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10259611	10259611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	479	871	2	ENST00000340748.4:c.2621C>T	p.Ala874Val	p.A874V	ENST00000340748		874	gCg/gTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276696	15276696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	478	1070	3	ENST00000263388.2:c.5569C>T	p.Arg1857Trp	p.R1857W	ENST00000263388	NM_000435.2	1857	Cgg/Tgg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15350825	15350825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	325	684	1	ENST00000263377.2:c.3178C>T	p.Arg1060Cys	p.R1060C	ENST00000263377	NM_058243.2	1060	Cgc/Tgc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18962999	18962999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	641	1166	0	ENST00000262803.5:c.866C>T	p.Pro289Leu	p.P289L	ENST00000262803	NM_002911.3	289	cCg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36209081	36209081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	59	123	0	ENST00000222270.7:c.161C>T	p.Thr54Met	p.T54M	ENST00000222270	NM_014727.1	54	aCg/aTg																																																																														
BBC3	27113	MSKCC	GRCh37	19	47725076	47725076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	685	1317	0	ENST00000449228.1:c.668G>A	p.Arg223Gln	p.R223Q	ENST00000449228	NM_001127240.2	223	cGa/cAa																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467488	25467488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	392	835	0	ENST00000264709.3:c.1588G>A	p.Asp530Asn	p.D530N	ENST00000264709	NM_175629.2	530	Gac/Aac																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607487	46607487	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	484	1181	4	ENST00000263734.3:c.1681delC	p.Gln561SerfsTer7	p.Q561Sfs*7	ENST00000263734	NM_001430.4	559	aCc/ac																																																																														
MSH2	4436	MSKCC	GRCh37	2	47702257	47702258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	356	597	0	ENST00000233146.2:c.1854dup	p.Tyr619IlefsTer25	p.Y619Ifs*25	ENST00000233146	NM_000251.2	618	cca/ccAa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61721053	61721053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	253	452	0	ENST00000401558.2:c.1221G>T	p.Gln407His	p.Q407H	ENST00000401558	NM_003400.3	407	caG/caT																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265140	198265140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	251	391	0	ENST00000335508.6:c.2737G>A	p.Gly913Ser	p.G913S	ENST00000335508	NM_012433.2	913	Ggc/Agc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31023718	31023718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	413	869	2	ENST00000375687.4:c.3203G>A	p.Arg1068Gln	p.R1068Q	ENST00000375687	NM_015338.5	1068	cGa/cAa																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46256365	46256365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	242	430	0	ENST00000371998.3:c.593G>A	p.Arg198His	p.R198H	ENST00000371998		198	cGt/cAt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441235	52441235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	275	524	0	ENST00000460680.1:c.535C>T	p.Arg179Trp	p.R179W	ENST00000460680	NM_004656.3	179	Cgg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643348	52643348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	247	489	0	ENST00000394830.3:c.2548C>T	p.Arg850Ter	p.R850*	ENST00000394830	NM_018313.4	850	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390945	89390945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	185	444	0	ENST00000336596.2:c.1011C>G	p.Asn337Lys	p.N337K	ENST00000336596	NM_005233.5	337	aaC/aaG																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480396	89480396	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	227	357	0	ENST00000336596.2:c.2233C>T	p.Arg745Ter	p.R745*	ENST00000336596	NM_005233.5	745	Cga/Tga																																																																														
GATA2	2624	MSKCC	GRCh37	3	128202786	128202786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	438	983	2	ENST00000341105.2:c.934G>A	p.Gly312Ser	p.G312S	ENST00000341105	NM_032638.4	312	Ggc/Agc																																																																														
PRKCI	5584	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	292	509	0	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807543	1807543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	612	1244	1	ENST00000260795.2:c.1712G>A	p.Arg571Gln	p.R571Q	ENST00000260795		571	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	123	346	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540295	187540296	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	260	483	0	ENST00000441802.2:c.7444_7445del	p.Val2482AsnfsTer16	p.V2482Nfs*16	ENST00000441802	NM_005245.3	2482	GTa/a																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542779	187542779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	293	534	2	ENST00000441802.2:c.4961G>A	p.Arg1654His	p.R1654H	ENST00000441802	NM_005245.3	1654	cGt/cAt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526754	31526754	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	272	714	0	ENST00000344624.3:c.286del	p.Cys96AlafsTer12	p.C96Afs*12	ENST00000344624		96	Tgc/gc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67590452	67590452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	92	177	0	ENST00000274335.5:c.1514G>A	p.Ser505Asn	p.S505N	ENST00000274335		505	aGc/aAc																																																																														
APC	324	MSKCC	GRCh37	5	112116593	112116593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	152	261	0	ENST00000257430.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000257430	NM_000038.5	213	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112176192	112176192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	162	445	0	ENST00000257430.4:c.4901C>T	p.Pro1634Leu	p.P1634L	ENST00000257430	NM_000038.5	1634	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112178001	112178001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	43	384	1	ENST00000257430.4:c.6710G>A	p.Arg2237Gln	p.R2237Q	ENST00000257430	NM_000038.5	2237	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112179333	112179333	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182456139		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	218	387	0	ENST00000257430.4:c.8042C>T	p.Pro2681Leu	p.P2681L	ENST00000257430	NM_000038.5	2681	cCg/cTg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149440505	149440505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	369	793	0	ENST00000286301.3:c.1889T>C	p.Leu630Pro	p.L630P	ENST00000286301	NM_005211.3	630	cTc/cCc																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176522601	176522601	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	556	1118	4	ENST00000292408.4:c.1703delC	p.Pro568GlnfsTer53	p.P568Qfs*53	ENST00000292408	NM_213647.1	566	cgC/cg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	470	1347	5	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																														
IRF4	3662	MSKCC	GRCh37	6	394981	394981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	223	439	0	ENST00000380956.4:c.377G>T	p.Arg126Met	p.R126M	ENST00000380956	NM_001195286.1	126	aGg/aTg																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225402	26225402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	102	206	0	ENST00000360408.1:c.20C>T	p.Thr7Met	p.T7M	ENST00000360408	NM_003532.2	7	aCg/aTg																																																																														
HIST1H3G	8355	MSKCC	GRCh37	6	26271224	26271224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	40	483	3	ENST00000305910.3:c.389G>A	p.Arg130His	p.R130H	ENST00000305910	NM_003534.2	130	cGc/cAc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552984	106552984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	369	747	0	ENST00000369096.4:c.949G>A	p.Gly317Arg	p.G317R	ENST00000369096	NM_001198.3	317	Ggg/Agg																																																																														
LATS1	9113	MSKCC	GRCh37	6	150004798	150004798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	284	521	0	ENST00000253339.5:c.1427C>T	p.Ser476Phe	p.S476F	ENST00000253339		476	tCt/tTt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099835	157099835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	476	907	0	ENST00000346085.5:c.772C>T	p.Gln258Ter	p.Q258*	ENST00000346085	NM_020732.3	258	Caa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55214367	55214367	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587778252		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	362	779	2	ENST00000275493.2:c.493C>T	p.Arg165Trp	p.R165W	ENST00000275493	NM_005228.3	165	Cgg/Tgg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	214	484	0	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275752	38275752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	336	594	1	ENST00000425967.3:c.1517G>A	p.Arg506Gln	p.R506Q	ENST00000425967	NM_001174067.1	506	cGg/cAg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287325	38287325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	305	968	4	ENST00000425967.3:c.332G>A	p.Arg111His	p.R111H	ENST00000425967	NM_001174067.1	111	cGc/cAc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371918	55371918	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	168	619	0	ENST00000297316.4:c.608A>T	p.Tyr203Phe	p.Y203F	ENST00000297316	NM_022454.3	203	tAc/tTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68931890	68931890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	295	645	0	ENST00000288368.4:c.320C>T	p.Thr107Ile	p.T107I	ENST00000288368	NM_024870.2	107	aCc/aTc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738861	145738861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	574	1248	0	ENST00000428558.2:c.2204G>A	p.Arg735His	p.R735H	ENST00000428558	NM_004260.3	735	cGt/cAt																																																																														
JAK2	3717	MSKCC	GRCh37	9	5126343	5126343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41316003		P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	179	297	0	ENST00000381652.3:c.3188G>A	p.Arg1063His	p.R1063H	ENST00000381652	NM_004972.3	1063	cGt/cAt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636793	8636793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	249	568	0	ENST00000356435.5:c.116G>A	p.Gly39Glu	p.G39E	ENST00000356435		39	gGa/gAa																																																																														
TEK	7010	MSKCC	GRCh37	9	27169538	27169538	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	401	780	0	ENST00000380036.4:c.539A>G	p.His180Arg	p.H180R	ENST00000380036	NM_000459.3	180	cAt/cGt																																																																														
FANCC	2176	MSKCC	GRCh37	9	97873744	97873744	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	41	549	0	ENST00000289081.3:c.1329+1G>T		p.X443_splice	ENST00000289081	NM_000136.2	443																																																																															
ABL1	25	MSKCC	GRCh37	9	133760702	133760702	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	646	1356	0	ENST00000318560.5:c.3025C>T	p.Arg1009Ter	p.R1009*	ENST00000318560	NM_005157.4	1009	Cga/Tga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123205089	123205089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	366	638	0	ENST00000218089.9:c.2449C>A	p.Pro817Thr	p.P817T	ENST00000218089	NM_001042749.1	817	Cct/Act																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8497249	8497249	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	34	231	0	ENST00000356435.5:c.2342C>A	p.Thr781Asn	p.T781N	ENST00000356435		781	aCt/aAt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	119	426	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47699358	47699358	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1248	238	503	0	ENST00000347630.2:c.150A>C	p.Glu50Asp	p.E50D	ENST00000347630	NM_001007230.1	50	gaA/gaC																																																																														
GNA11	2767	MSKCC	GRCh37	19	3119038	3119038	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	82	714	0	ENST00000078429.4:c.722A>T	p.Glu241Val	p.E241V	ENST00000078429	NM_002067.2	241	gAg/gTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140434563	140434563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	14	200	0	ENST00000288602.6:c.2135C>T	p.Ala712Val	p.A712V	ENST00000288602	NM_004333.4	712	gCc/gTc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	93	539	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
BLM	641	MSKCC	GRCh37	15	91346763	91346763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	42	351	0	ENST00000355112.3:c.3371C>T	p.Ala1124Val	p.A1124V	ENST00000355112	NM_000057.2	1124	gCa/gTa																																																																														
APC	324	MSKCC	GRCh37	5	112176182	112176182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	67	367	0	ENST00000257430.4:c.4891del	p.Ser1631ValfsTer19	p.S1631Vfs*19	ENST00000257430	NM_000038.5	1631	Agt/gt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152009033	152009033	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0033400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	47	255	0	ENST00000262189.6:c.591-2A>C		p.X197_splice	ENST00000262189	NM_170606.2	197																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0033405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	375	639	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	1304	521	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44950082	44950082	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	110	264	1	ENST00000377967.4:c.3851C>G	p.Ser1284Ter	p.S1284*	ENST00000377967	NM_021140.2	1284	tCa/tGa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393677	139393677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	207	759	0	ENST00000277541.6:c.5969C>A	p.Ala1990Asp	p.A1990D	ENST00000277541	NM_017617.3	1990	gCc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	58	390	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25368492	25368492	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0033406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	66	289	0	ENST00000256078.4:c.453A>T	p.Arg151Ser	p.R151S	ENST00000256078	NM_033360.2	151	agA/agT																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986615	36986616	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	43	224	0	ENST00000354822.5:c.1073_1074insA	p.Asp359GlyfsTer80	p.D359Gfs*80	ENST00000354822	NM_001079668.2	358	ccg/ccAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460544	8460544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	43	314	0	ENST00000356435.5:c.3742G>A	p.Asp1248Asn	p.D1248N	ENST00000356435		1248	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	68	491	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	80	824	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0033408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	32	530	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0033408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	17	179	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
RET	5979	MSKCC	GRCh37	10	43597850	43597850	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138265837		P-0033408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	48	804	3	ENST00000355710.3:c.398G>A	p.Arg133His	p.R133H	ENST00000355710	NM_020975.4	133	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	199	825	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0033412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	41	304	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
APC	324	MSKCC	GRCh37	5	112170777	112170780	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0033412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	121	644	0	ENST00000257430.4:c.1875_1878del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	625	CAGAca/ca																																																																														
TSHR	7253	MSKCC	GRCh37	14	81610299	81610299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	31	413	0	ENST00000298171.2:c.1897G>A	p.Asp633Asn	p.D633N	ENST00000298171	NM_000369.2	633	Gac/Aac																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784959	9784959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	58	541	0	ENST00000377346.4:c.2962G>A	p.Glu988Lys	p.E988K	ENST00000377346	NM_005026.3	988	Gag/Aag																																																																														
MSH3	4437	MSKCC	GRCh37	5	80168956	80168956	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	73	749	0	ENST00000265081.6:c.3152A>G	p.Asp1051Gly	p.D1051G	ENST00000265081	NM_002439.4	1051	gAt/gGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	162	287	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	442	510	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	319	589	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098957	178098957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	380	345	0	ENST00000397062.3:c.88C>T	p.Leu30Phe	p.L30F	ENST00000397062	NM_006164.4	30	Ctt/Ttt																																																																														
PARK2	5071	MSKCC	GRCh37	6	162622197	162622197	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1801474		P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	262	403	0	ENST00000366898.1:c.500G>A	p.Ser167Asn	p.S167N	ENST00000366898	NM_004562.2	167	aGc/aAc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542109	187542110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	211	393	0	ENST00000441802.2:c.5630dup	p.Val1878CysfsTer8	p.V1878Cfs*8	ENST00000441802	NM_005245.3	1877	cct/ccCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	312	611	0	ENST00000269305.4:c.568C>G	p.Pro190Ala	p.P190A	ENST00000269305	NM_001126112.2	190	Cct/Gct																																																																														
TET1	80312	MSKCC	GRCh37	10	70450663	70450663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	213	430	2	ENST00000373644.4:c.5503C>T	p.Pro1835Ser	p.P1835S	ENST00000373644	NM_030625.2	1835	Cca/Tca																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115272928	115272928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	381	722	0	ENST00000438362.2:c.1445C>G	p.Ala482Gly	p.A482G	ENST00000438362	NM_001242891.1	482	gCc/gGc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252950	36252950	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	236	386	0	ENST00000300305.3:c.412G>T	p.Glu138Ter	p.E138*	ENST00000300305		138	Gaa/Taa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803170	1803170	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	668	756	0	ENST00000260795.2:c.522C>G	p.Phe174Leu	p.F174L	ENST00000260795		174	ttC/ttG																																																																														
MSH3	4437	MSKCC	GRCh37	5	79950638	79950638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	216	355	1	ENST00000265081.6:c.92C>T	p.Thr31Met	p.T31M	ENST00000265081	NM_002439.4	31	aCg/aTg																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519218	137519218	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	172	328	1	ENST00000367739.4:c.1420G>T	p.Glu474Ter	p.E474*	ENST00000367739	NM_000416.2	474	Gag/Tag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98224263	98224263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	340	314	0	ENST00000331920.6:c.2578G>C	p.Asp860His	p.D860H	ENST00000331920	NM_000264.3	860	Gac/Cac																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139399402	139399402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	355	773	0	ENST00000277541.6:c.4741C>G	p.Pro1581Ala	p.P1581A	ENST00000277541	NM_017617.3	1581	Ccg/Gcg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44969444	44969444	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	271	475	2	ENST00000377967.4:c.4126G>T	p.Glu1376Ter	p.E1376*	ENST00000377967	NM_021140.2	1376	Gaa/Taa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123210260	123210264	+	frameshift_variant	Frame_Shift_Del	DEL	TAATT	TAATT	-			P-0033427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	257	554	0	ENST00000218089.9:c.2612_2616del	p.Leu871ArgfsTer22	p.L871Rfs*22	ENST00000218089	NM_001042749.1	871	cTAATT/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	25	417	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	30	286	1	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	118	691	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11259397	11259397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	134	656	0	ENST00000361445.4:c.4171C>G	p.Arg1391Gly	p.R1391G	ENST00000361445	NM_004958.3	1391	Cga/Gga																																																																														
APC	324	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0033429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	43	264	0	ENST00000257430.4:c.3807_3808delAT	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621866	1621866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	22	621	0	ENST00000344749.5:c.926C>T	p.Pro309Leu	p.P309L	ENST00000344749	NM_001136139.2	309	cCg/cTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7152906	7152906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	34	600	0	ENST00000302850.5:c.2062C>T	p.Pro688Ser	p.P688S	ENST00000302850	NM_000208.2	688	Cca/Tca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	62	99	0				ENST00000310581	NM_198253.2																																																																																
ATM	472	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0033442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	186	384	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577523	7577524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	267	628	0	ENST00000269305.4:c.757dup	p.Thr253AsnfsTer11	p.T253Nfs*11	ENST00000269305	NM_001126112.2	253	acc/aAcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943779	9943779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	213	419	0	ENST00000330684.3:c.1162G>A	p.Ala388Thr	p.A388T	ENST00000330684	NM_001134407.1	388	Gcc/Acc																																																																														
H3F3B	3021	MSKCC	GRCh37	17	73774928	73774928	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	39	493	0	ENST00000254810.4:c.245del	p.Asp82AlafsTer2	p.D82Afs*2	ENST00000254810	NM_005324.3	82	gAc/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	495	550	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	366	390	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	91	239	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
PGR	5241	MSKCC	GRCh37	11	100999551	100999551	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	598	969	0	ENST00000325455.5:c.251A>G	p.Glu84Gly	p.E84G	ENST00000325455	NM_001202474.3	84	gAg/gGg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134112	41134112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	367	544	0	ENST00000379561.5:c.1516A>G	p.Thr506Ala	p.T506A	ENST00000379561	NM_002015.3	506	Acc/Gcc																																																																														
RB1	5925	MSKCC	GRCh37	13	49039401	49039401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	465	721	0	ENST00000267163.4:c.2386C>T	p.Pro796Ser	p.P796S	ENST00000267163	NM_000321.2	796	Ccc/Tcc																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982376	25982376	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	217	348	0	ENST00000435504.4:c.914del	p.Leu305TyrfsTer6	p.L305Yfs*6	ENST00000435504		305	tTa/ta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	134	819	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151949665	151949665	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	114	675	1	ENST00000262189.6:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000262189	NM_170606.2	479	Cag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	48955559	48955559	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	118	525	0	ENST00000267163.4:c.1675G>T	p.Glu559Ter	p.E559*	ENST00000267163	NM_000321.2	559	Gaa/Taa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032271	26032271	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1278314228		P-0033484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	32	292	0	ENST00000244661.2:c.18G>C	p.Gln6His	p.Q6H	ENST00000244661	NM_003537.3	6	caG/caC																																																																														
BCOR	54880	MSKCC	GRCh37	X	39916421	39916421	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	100	675	0	ENST00000378444.4:c.4582del	p.Gln1528ArgfsTer40	p.Q1528Rfs*40	ENST00000378444	NM_001123385.1	1528	Cag/ag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044964	47044964	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	117	886	0	ENST00000329236.7:c.2056T>G	p.Cys686Gly	p.C686G	ENST00000329236	NM_001204466.1	686	Tgc/Ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	97	680	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
MET	4233	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0033485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	152	940	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27106138	27106138	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	39	559	0	ENST00000324856.7:c.5749A>G	p.Thr1917Ala	p.T1917A	ENST00000324856	NM_006015.4	1917	Act/Gct																																																																														
TCF3	6929	MSKCC	GRCh37	19	1650231	1650231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	37	699	0	ENST00000344749.5:c.17G>C	p.Arg6Thr	p.R6T	ENST00000344749	NM_001136139.2	6	aGg/aCg																																																																														
MET	4233	MSKCC	GRCh37	7	116371809	116371809	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	45	587	0	ENST00000397752.3:c.1289del	p.Phe430SerfsTer10	p.F430Sfs*10	ENST00000397752	NM_000245.2	430	Ttc/tc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717735	89717739	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGT	AAAGT	-			P-0033488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	136	573	0	ENST00000371953.3:c.761_765del	p.Lys254ArgfsTer42	p.K254Rfs*42	ENST00000371953	NM_000314.4	254	AAAGTa/a																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	99	310	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098815	178098815	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	110	680	0	ENST00000397062.3:c.230A>T	p.Asp77Val	p.D77V	ENST00000397062	NM_006164.4	77	gAt/gTt																																																																														
LMO1	4004	MSKCC	GRCh37	11	8246143	8246172	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	TGGAGGCCAGGCGCCGGGCGTTACTGAACT	TGGAGGCCAGGCGCCGGGCGTTACTGAACT	-			P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	55	452	0	ENST00000335790.3:c.462_*20del		p.*154*	ENST00000335790	NM_002315.2	154																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10610331	10610331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	91	917	0	ENST00000171111.5:c.379G>T	p.Gly127Cys	p.G127C	ENST00000171111	NM_203500.1	127	Ggt/Tgt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11134270	11134270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	65	605	1	ENST00000344626.4:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000344626	NM_003072.3	979	cGa/cAa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390911	89390911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	34	381	0	ENST00000336596.2:c.977C>T	p.Pro326Leu	p.P326L	ENST00000336596	NM_005233.5	326	cCa/cTa																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149459840	149459840	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	91	773	0	ENST00000286301.3:c.367G>T	p.Ala123Ser	p.A123S	ENST00000286301	NM_005211.3	123	Gca/Tca																																																																														
ROS1	6098	MSKCC	GRCh37	6	117609881	117609881	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	110	640	0	ENST00000368508.3:c.6818A>T	p.Asn2273Ile	p.N2273I	ENST00000368508	NM_002944.2	2273	aAc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	390	617	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
NF2	4771	MSKCC	GRCh37	22	30000087	30000087	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	235	486	0	ENST00000338641.4:c.100G>T	p.Glu34Ter	p.E34*	ENST00000338641	NM_000268.3	34	Gag/Tag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11293469	11293469	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	102	746	0	ENST00000361445.4:c.2407G>T	p.Gly803Ter	p.G803*	ENST00000361445	NM_004958.3	803	Gga/Tga																																																																														
SPEN	23013	MSKCC	GRCh37	1	16258927	16258928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	93	692	1	ENST00000375759.3:c.6198dup	p.Pro2067ThrfsTer4	p.P2067Tfs*4	ENST00000375759	NM_015001.2	2064	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087886	27087886	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	131	641	0	ENST00000324856.7:c.2174del	p.Pro725HisfsTer17	p.P725Hfs*17	ENST00000324856	NM_006015.4	725	Cca/ca																																																																														
RET	5979	MSKCC	GRCh37	10	43597990	43597990	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	128	750	3	ENST00000355710.3:c.538C>T	p.Arg180Ter	p.R180*	ENST00000355710	NM_020975.4	180	Cga/Tga																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	29	218	4	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	36	544	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
SESN3	143686	MSKCC	GRCh37	11	94910926	94910926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145434950		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	122	656	1	ENST00000536441.1:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000536441	NM_144665.3	402	Cgc/Tgc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998796	100998796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	46	548	0	ENST00000325455.5:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000325455	NM_001202474.3	336	Gcc/Acc																																																																														
BIRC3	330	MSKCC	GRCh37	11	102195839	102195839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	79	527	1	ENST00000263464.3:c.599G>T	p.Gly200Val	p.G200V	ENST00000263464	NM_001165.4	200	gGa/gTa																																																																														
RAD52	5893	MSKCC	GRCh37	12	1036330	1036330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	308	610	0	ENST00000358495.3:c.448G>A	p.Gly150Arg	p.G150R	ENST00000358495	NM_134424.2	150	Ggg/Agg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	176	586	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	163	855	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486569	56486569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	289	602	0	ENST00000267101.3:c.1148A>G	p.Lys383Arg	p.K383R	ENST00000267101	NM_001982.3	383	aAg/aGg																																																																														
MGA	23269	MSKCC	GRCh37	15	41989087	41989087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	86	561	1	ENST00000219905.7:c.1879C>T	p.Arg627Ter	p.R627*	ENST00000219905	NM_001164273.1	627	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42000305	42000305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	60	474	0	ENST00000219905.7:c.2324C>T	p.Ala775Val	p.A775V	ENST00000219905	NM_001164273.1	775	gCg/gTg																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2097756	2097756	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	33	541	0	ENST00000219066.1:c.93del	p.Cys32ValfsTer24	p.C32Vfs*24	ENST00000219066	NM_002528.5	31	ggG/gg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67660508	67660508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	88	589	0	ENST00000264010.4:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000264010	NM_006565.3	470	Cgt/Tgt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347765	89347765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	101	565	0	ENST00000301030.4:c.5185G>A	p.Ala1729Thr	p.A1729T	ENST00000301030	NM_001256183.1	1729	Gcc/Acc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15964935	15964935	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	112	686	0	ENST00000268712.3:c.5661del	p.Pro1888GlnfsTer11	p.P1888Qfs*11	ENST00000268712	NM_006311.3	1887	ttT/tt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	127	734	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	88	595	4	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78857255	78857255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	108	608	2	ENST00000306801.3:c.1621G>A	p.Val541Met	p.V541M	ENST00000306801	NM_020761.2	541	Gtg/Atg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	329	744	3	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	157	408	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467200	25467200	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	30	479	1	ENST00000264709.3:c.1675del	p.Cys559AlafsTer92	p.C559Afs*92	ENST00000264709	NM_175629.2	559	Tgc/gc																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128030517	128030517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	120	543	2	ENST00000285398.2:c.1751C>T	p.Thr584Met	p.T584M	ENST00000285398	NM_000122.1	584	aCg/aTg																																																																														
BARD1	580	MSKCC	GRCh37	2	215610562	215610562	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146946984		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	34	573	0	ENST00000260947.4:c.1694G>A	p.Arg565His	p.R565H	ENST00000260947	NM_000465.2	565	cGt/cAt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662544	227662544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	43	522	0	ENST00000305123.5:c.911G>A	p.Arg304His	p.R304H	ENST00000305123	NM_005544.2	304	cGc/cAc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715612	30715612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	24	346	0	ENST00000359013.4:c.1345T>C	p.Tyr449His	p.Y449H	ENST00000359013	NM_001024847.2	449	Tac/Cac																																																																														
MLH1	4292	MSKCC	GRCh37	3	37038119	37038119	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	48	244	0	ENST00000231790.2:c.129del	p.Lys43AsnfsTer7	p.K43Nfs*7	ENST00000231790	NM_000249.3	42	gcA/gc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37091981	37091981	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	92	516	0	ENST00000231790.2:c.2109del	p.Val704CysfsTer79	p.V704Cfs*79	ENST00000231790	NM_000249.3	703	gAa/ga																																																																														
MST1	4485	MSKCC	GRCh37	3	49723037	49723037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	72	300	0	ENST00000449682.2:c.1379G>A	p.Arg460Gln	p.R460Q	ENST00000449682	NM_020998.3	460	cGa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112170823	112170823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	85	606	1	ENST00000257430.4:c.1919G>A	p.Arg640Gln	p.R640Q	ENST00000257430	NM_000038.5	640	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	130	339	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910371	29910372	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	37	471	0	ENST00000376809.5:c.46dupG	p.Ala16GlyfsTer83	p.A16Gfs*83	ENST00000376809	NM_002116.7	14	tcg/tcGg																																																																														
STK19	8859	MSKCC	GRCh37	6	31939801	31939801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	127	659	0	ENST00000375331.2:c.28G>A	p.Asp10Asn	p.D10N	ENST00000375331	NM_004197.1	10	Gat/Aat																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287213	33287213	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	39	617	0	ENST00000374542.5:c.1884delC	p.Cys629AlafsTer16	p.C629Afs*16	ENST00000374542	NM_001141970.1	628	ccC/cc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13935615	13935615	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	45	564	0	ENST00000405192.2:c.1241A>T	p.Asp414Val	p.D414V	ENST00000405192	NM_001163147.1	414	gAc/gTc																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508395	106508395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	99	282	0	ENST00000359195.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000359195	NM_002649.2	130	cGg/cAg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508725	106508725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	102	574	2	ENST00000359195.3:c.723del	p.Gly242AlafsTer17	p.G242Afs*17	ENST00000359195	NM_002649.2	240	aCc/ac																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	96	712	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
BRAF	673	MSKCC	GRCh37	7	140494163	140494163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	291	862	0	ENST00000288602.6:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000288602	NM_004333.4	362	cGa/cAa																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786922	135786922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	89	473	0	ENST00000298552.3:c.947G>A	p.Arg316Gln	p.R316Q	ENST00000298552	NM_001162426.1	316	cGg/cAg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44938475	44938475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	29	268	0	ENST00000377967.4:c.3023C>T	p.Ala1008Val	p.A1008V	ENST00000377967	NM_021140.2	1008	gCa/gTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411366	63411366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	224	353	0	ENST00000330258.3:c.1801C>T	p.Arg601Ter	p.R601*	ENST00000330258	NM_152424.3	601	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411777	63411777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	235	402	1	ENST00000330258.3:c.1390G>A	p.Ala464Thr	p.A464T	ENST00000330258	NM_152424.3	464	Gcc/Acc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0033508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	110	443	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	17	308	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125514077	125514077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	167	563	0	ENST00000428830.2:c.1015G>A	p.Val339Ile	p.V339I	ENST00000428830	NM_001114121.2	339	Gta/Ata																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9943671	9943671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	53	652	0	ENST00000330684.3:c.1270C>T	p.Pro424Ser	p.P424S	ENST00000330684	NM_001134407.1	424	Ccc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	127	484	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	33	261	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	227	774	0	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920381	114920381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	134	538	0	ENST00000543371.1:c.1322C>A	p.Ala441Glu	p.A441E	ENST00000543371	NM_001198531.1	441	gCa/gAa																																																																														
MGA	23269	MSKCC	GRCh37	15	41961256	41961256	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	91	624	0	ENST00000219905.7:c.164C>A	p.Ser55Ter	p.S55*	ENST00000219905	NM_001164273.1	55	tCa/tAa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2098751	2098752	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	143	568	0	ENST00000219476.3:c.138_138+1del		p.LR45fs	ENST00000219476	NM_000548.3	45	ctGAga/ctga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247344	153247344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	163	356	1	ENST00000281708.4:c.1458G>T	p.Trp486Cys	p.W486C	ENST00000281708	NM_033632.3	486	tgG/tgT																																																																														
APC	324	MSKCC	GRCh37	5	112174511	112174511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	86	376	0	ENST00000257430.4:c.3220A>G	p.Thr1074Ala	p.T1074A	ENST00000257430	NM_000038.5	1074	Act/Gct																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778096	135778096	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	196	630	0	ENST00000298552.3:c.2287C>T	p.Gln763Ter	p.Q763*	ENST00000298552	NM_001162426.1	763	Cag/Tag																																																																														
STK40	83931	MSKCC	GRCh37	1	36807460	36807460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	123	703	0	ENST00000373129.3:c.1204C>T	p.Arg402Trp	p.R402W	ENST00000373129	NM_032017.1	402	Cgg/Tgg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562837	95562837	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	159	381	0	ENST00000343455.3:c.4420A>T	p.Thr1474Ser	p.T1474S	ENST00000343455	NM_177438.2	1474	Acc/Tcc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9892267	9892267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	76	457	0	ENST00000330684.3:c.2223G>C	p.Arg741Ser	p.R741S	ENST00000330684	NM_001134407.1	741	agG/agC																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273988	10273988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	144	766	0	ENST00000330684.3:c.281G>T	p.Arg94Leu	p.R94L	ENST00000330684	NM_001134407.1	94	cGc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992326	72992326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	102	810	0	ENST00000268489.5:c.1719C>G	p.Asn573Lys	p.N573K	ENST00000268489	NM_006885.3	573	aaC/aaG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578209	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	216	650	0	ENST00000269305.4:c.640_641del	p.His214Ter	p.H214*	ENST00000269305	NM_001126112.2	214	CAt/t																																																																														
ALK	238	MSKCC	GRCh37	2	30143485	30143485	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	34	241	0	ENST00000389048.3:c.41T>C	p.Leu14Pro	p.L14P	ENST00000389048	NM_004304.4	14	cTt/cCt																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31407021	31407021	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	80	495	0	ENST00000344624.3:c.3886C>T	p.Arg1296Ter	p.R1296*	ENST00000344624		1296	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86627301	86627301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	48	346	0	ENST00000274376.6:c.676G>C	p.Val226Leu	p.V226L	ENST00000274376	NM_002890.2	226	Gtt/Ctt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	42	673	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120512196	120512196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	81	524	1	ENST00000256646.2:c.1046C>T	p.Pro349Leu	p.P349L	ENST00000256646	NM_024408.3	349	cCa/cTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	26	441	0	ENST00000304494.5:c.458-1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	26	441	0	ENST00000304494.5:c.458-1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	26	441	0	ENST00000304494.5:c.458-1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	92	382	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157511270	157511270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	61	360	1	ENST00000346085.5:c.3788G>T	p.Gly1263Val	p.G1263V	ENST00000346085	NM_020732.3	1263	gGc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	22	770	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117656	70117656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	36	632	0	ENST00000245479.2:c.124G>T	p.Asp42Tyr	p.D42Y	ENST00000245479	NM_000346.3	42	Gac/Tac																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117664	70117664	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	40	624	0	ENST00000245479.2:c.132G>C	p.Glu44Asp	p.E44D	ENST00000245479	NM_000346.3	44	gaG/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	38	343	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	46	349	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	46	349	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220489	1220489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	80	565	0	ENST00000326873.7:c.582C>A	p.Asp194Glu	p.D194E	ENST00000326873	NM_000455.4	194	gaC/gaA																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039620	47039620	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	64	584	0	ENST00000329236.7:c.838C>T	p.Gln280Ter	p.Q280*	ENST00000329236	NM_001204466.1	280	Cag/Tag																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713685	30713685	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	66	371	0	ENST00000359013.4:c.1085T>C	p.Leu362Pro	p.L362P	ENST00000359013	NM_001024847.2	362	cTg/cCg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55144170	55144170	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	50	338	0	ENST00000257290.5:c.1999T>A	p.Ser667Thr	p.S667T	ENST00000257290	NM_006206.4	667	Tca/Aca																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057657	180057657	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	110	864	0	ENST00000261937.6:c.298G>T	p.Glu100Ter	p.E100*	ENST00000261937	NM_182925.4	100	Gag/Tag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508538	106508538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	21	241	0	ENST00000359195.3:c.532C>A	p.Arg178Ser	p.R178S	ENST00000359195	NM_002649.2	178	Cgt/Agt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8460540	8460540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	50	363	0	ENST00000356435.5:c.3746C>A	p.Pro1249His	p.P1249H	ENST00000356435		1249	cCc/cAc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870998	12870998	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs139727620		P-0033601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	270	311	0	ENST00000228872.4:c.225G>C	p.Glu75Asp	p.E75D	ENST00000228872	NM_004064.3	75	gaG/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577555	7577556	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0033601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	650	597	0	ENST00000269305.4:c.725_726delinsTT	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGC/tTT																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422612	49422612	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0033601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	596	474	0	ENST00000301067.7:c.14381del	p.Lys4794ArgfsTer3	p.K4794Rfs*3	ENST00000301067	NM_003482.3	4794	aAg/ag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434595	49434595	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	780	685	0	ENST00000301067.7:c.6958G>T	p.Glu2320Ter	p.E2320*	ENST00000301067	NM_003482.3	2320	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444938	49444939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	513	513	1	ENST00000301067.7:c.2527dup	p.Ser843PhefsTer5	p.S843Ffs*5	ENST00000301067	NM_003482.3	843	tcc/tTcc																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379835	17379835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	1194	898	3	ENST00000359435.4:c.220C>T	p.Gln74Ter	p.Q74*	ENST00000359435	NM_001033549.1	74	Cag/Tag																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607666	46607666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	734	745	2	ENST00000263734.3:c.1855C>T	p.Pro619Ser	p.P619S	ENST00000263734	NM_001430.4	619	Ccg/Tcg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1182	199	915	0	ENST00000171111.5:c.779G>T	p.Arg260Leu	p.R260L	ENST00000171111	NM_203500.1	260	cGa/cTa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36937900	36937900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	181	944	0	ENST00000361632.4:c.936G>T	p.Trp312Cys	p.W312C	ENST00000361632		312	tgG/tgT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858133	9858133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	120	737	0	ENST00000330684.3:c.3268G>C	p.Val1090Leu	p.V1090L	ENST00000330684	NM_001134407.1	1090	Gtg/Ctg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858149	9858149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	121	715	0	ENST00000330684.3:c.3252C>A	p.Asp1084Glu	p.D1084E	ENST00000330684	NM_001134407.1	1084	gaC/gaA																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821601	72821642	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCACTGCCA	CCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCACTGCCA	-			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	42	85	0	ENST00000268489.5:c.10533_10574del	p.Ser3513_Gly3526del	p.S3513_G3526del	ENST00000268489	NM_006885.3	3511	ggTGGCAGTGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGc/ggc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220588	1220595	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGTTCG	CCCGTTCG	-			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	143	660	0	ENST00000326873.7:c.607_614del	p.Pro203GlyfsTer60	p.P203Gfs*60	ENST00000326873	NM_000455.4	202	caCCCGTTCGcg/cacg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47155459	47155459	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	54	454	0	ENST00000409792.3:c.4622A>T	p.Asn1541Ile	p.N1541I	ENST00000409792	NM_014159.6	1541	aAt/aTt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165654	47165654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	57	561	0	ENST00000409792.3:c.472G>T	p.Ala158Ser	p.A158S	ENST00000409792	NM_014159.6	158	Gct/Tct																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128420028	128420028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	131	774	0	ENST00000265960.3:c.400C>A	p.Pro134Thr	p.P134T	ENST00000265960	NM_001006617.1	134	Cca/Aca																																																																														
RXRA	6256	MSKCC	GRCh37	9	137325955	137325955	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	143	622	0	ENST00000481739.1:c.1143G>C	p.Lys381Asn	p.K381N	ENST00000481739	NM_002957.4	381	aaG/aaC																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129621	11129637	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGTTCCATCAGAACGC	TTGTTCCATCAGAACGC	G			P-0033603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	97	550	0	ENST00000344626.4:c.2439-12_2443delinsG		p.X813_splice	ENST00000344626	NM_003072.3	813																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	24	490	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FGF4	2249	MSKCC	GRCh37	11	69588210	69588210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	57	688	0	ENST00000168712.1:c.488C>A	p.Pro163His	p.P163H	ENST00000168712	NM_002007.2	163	cCc/cAc																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986552	36986553	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	69	741	0	ENST00000354822.5:c.1136dup	p.His379GlnfsTer60	p.H379Qfs*60	ENST00000354822	NM_001079668.2	379	cac/caAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005213-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			801	216	886	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005213-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			846	69	535	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39609314	39609314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005213-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			453	81	268	1	ENST00000262039.4:c.1616G>A	p.Arg539His	p.R539H	ENST00000262039	NM_002647.2	539	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	320	589	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797906	45797906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	334	414	0	ENST00000372115.3:c.823G>T	p.Val275Leu	p.V275L	ENST00000372115	NM_001048171.1	275	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	149	846	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	33	739	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
MYCN	4613	MSKCC	GRCh37	2	16085680	16085680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	95	652	1	ENST00000281043.3:c.856C>T	p.Arg286Cys	p.R286C	ENST00000281043	NM_005378.4	286	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	93	304	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683747	162683747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	80	744	0	ENST00000366898.1:c.222G>T	p.Trp74Cys	p.W74C	ENST00000366898	NM_004562.2	74	tgG/tgT																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505312	25505312	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	38	753	0	ENST00000264709.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000264709	NM_175629.2	149	gCg/gTg																																																																														
BCL6	604	MSKCC	GRCh37	3	187451405	187451405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	118	423	0	ENST00000232014.4:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000232014	NM_001130845.1	26	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	185	869	1	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0033361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	68	319	0	ENST00000399503.3:c.819_820delAG	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0033361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	218	367	0	ENST00000371953.3:c.253+1G>A		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
ERRFI1	54206	MSKCC	GRCh37	1	8074242	8074246	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGG	AAGGG	-			P-0033361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	95	398	0	ENST00000377482.5:c.413_417del	p.Ser138PhefsTer8	p.S138Ffs*8	ENST00000377482	NM_018948.3	138	tCCCTT/t																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31381401	31381401	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs201681031		P-0033361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	87	424	0	ENST00000328111.2:c.1126G>A	p.Glu376Lys	p.E376K	ENST00000328111	NM_006892.3	376	Gag/Aag																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202555	67202555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201231114		P-0033361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	121	1075	0	ENST00000312629.5:c.1364C>T	p.Pro455Leu	p.P455L	ENST00000312629	NM_003952.2	455	cCg/cTg																																																																														
MGA	23269	MSKCC	GRCh37	15	42059165	42059165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	77	401	0	ENST00000219905.7:c.8885C>T	p.Ser2962Phe	p.S2962F	ENST00000219905	NM_001164273.1	2962	tCc/tTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808955	3808955	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	137	564	0	ENST00000262367.5:c.3269del	p.Leu1090TyrfsTer9	p.L1090Yfs*9	ENST00000262367	NM_004380.2	1090	tTa/ta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928078	178928113	+	inframe_deletion	In_Frame_Del	DEL	AGAAGATTTGCTGAACCCTATTGGTGTTACTGGATC	AGAAGATTTGCTGAACCCTATTGGTGTTACTGGATC	-			P-0033361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	70	638	0	ENST00000263967.3:c.1357_1392del	p.Glu453_Ser464del	p.E453_S464del	ENST00000263967	NM_006218.2	452	ttAGAAGATTTGCTGAACCCTATTGGTGTTACTGGATCa/tta																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	26	367	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	27	514	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	27	514	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686965	37686965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	48	588	0	ENST00000447079.4:c.3869C>T	p.Pro1290Leu	p.P1290L	ENST00000447079	NM_015083.1	1290	cCc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017976-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			664	488	549	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SDHB	6390	MSKCC	GRCh37	1	17354353	17354353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017976-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	141	468	0	ENST00000375499.3:c.431G>A	p.Ser144Asn	p.S144N	ENST00000375499	NM_003000.2	144	aGc/aAc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87636350	87636350	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0017976-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			666	120	549	0	ENST00000277120.3:c.2515T>C	p.Ter839GlnextTer17	p.*839Qext*17	ENST00000277120		839	Tag/Cag																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0033204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	40	353	1	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577579	7577579	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	229	525	0	ENST00000269305.4:c.702C>A	p.Tyr234Ter	p.Y234*	ENST00000269305	NM_001126112.2	234	taC/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	190	386	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0033204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	73	264	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589585	67589586	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATGAAT			P-0033204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	74	195	0	ENST00000274335.5:c.1351_1356dup	p.Glu451_Tyr452dup	p.E451_Y452dup	ENST00000274335		451	cat/cATGAATat																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457711	67457711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	103	337	0	ENST00000327367.4:c.521G>A	p.Ser174Asn	p.S174N	ENST00000327367	NM_005902.3	174	aGc/aAc																																																																														
APC	324	MSKCC	GRCh37	5	112174294	112174294	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	58	242	0	ENST00000257430.4:c.3003del	p.Ala1002ProfsTer3	p.A1002Pfs*3	ENST00000257430	NM_000038.5	1001	ccA/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057799	27057799	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	103	787	0	ENST00000324856.7:c.1507C>T	p.Gln503Ter	p.Q503*	ENST00000324856	NM_006015.4	503	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	335	563	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
MED12	9968	MSKCC	GRCh37	X	70339328	70339328	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0021905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	187	344	0	ENST00000374080.3:c.204+1G>A		p.X68_splice	ENST00000374080		68																																																																															
NTRK3	4916	MSKCC	GRCh37	15	88679177	88679177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	260	419	0	ENST00000360948.2:c.860A>G	p.Glu287Gly	p.E287G	ENST00000360948	NM_001012338.2	287	gAg/gGg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191359	185191359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021905-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			809	113	449	0	ENST00000265026.3:c.2240C>G	p.Ser747Cys	p.S747C	ENST00000265026	NM_004721.4	747	tCt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	209	433	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	161	572	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40459418	40459418	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0032981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	286	392	0	ENST00000345506.4:c.1681-2A>C		p.X561_splice	ENST00000345506	NM_003152.3	561																																																																															
PALB2	79728	MSKCC	GRCh37	16	23634294	23634294	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	127	530	0	ENST00000261584.4:c.2992G>C	p.Gly998Arg	p.G998R	ENST00000261584	NM_024675.3	998	Gga/Cga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032473-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			218	34	262	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0032473-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			291	55	375	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	61	350	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	200	742	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22160227	22160227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	82	490	0	ENST00000215832.6:c.404G>A	p.Arg135Lys	p.R135K	ENST00000215832	NM_002745.4	135	aGa/aAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862791	9862791	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	56	665	0	ENST00000330684.3:c.2512G>T	p.Glu838Ter	p.E838*	ENST00000330684	NM_001134407.1	838	Gag/Tag																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934342	39934342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	58	657	0	ENST00000378444.4:c.257G>A	p.Gly86Glu	p.G86E	ENST00000378444	NM_001123385.1	86	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	145	763	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395108	139395108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	10	761	1	ENST00000277541.6:c.5830G>A	p.Ala1944Thr	p.A1944T	ENST00000277541	NM_017617.3	1944	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	10	232	1	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226677	2226677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	11	818	0	ENST00000398665.3:c.4157G>A	p.Gly1386Asp	p.G1386D	ENST00000398665	NM_032482.2	1386	gGc/gAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993104	72993104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	20	928	0	ENST00000268489.5:c.941G>A	p.Arg314Gln	p.R314Q	ENST00000268489	NM_006885.3	314	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112174559	112174559	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	29	465	0	ENST00000257430.4:c.3268C>T	p.Gln1090Ter	p.Q1090*	ENST00000257430	NM_000038.5	1090	Caa/Taa																																																																														
PGR	5241	MSKCC	GRCh37	11	100998450	100998450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	72	404	1	ENST00000325455.5:c.1352C>T	p.Ala451Val	p.A451V	ENST00000325455	NM_001202474.3	451	gCg/gTg																																																																														
ATM	472	MSKCC	GRCh37	11	108155153	108155153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	28	584	0	ENST00000278616.4:c.3946A>G	p.Thr1316Ala	p.T1316A	ENST00000278616	NM_000051.3	1316	Acc/Gcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711885	89711885	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	393	442	0	ENST00000371953.3:c.504delT	p.Ser170ValfsTer13	p.S170Vfs*13	ENST00000371953	NM_000314.4	168	aTt/at																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	130	309	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0033173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	16	30	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	142	320	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210688	36210688	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0033173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	223	569	0	ENST00000222270.7:c.439C>T	p.Arg147Ter	p.R147*	ENST00000222270	NM_014727.1	147	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624305	89624305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0033173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	279	611	0	ENST00000371953.3:c.79T>G	p.Tyr27Asp	p.Y27D	ENST00000371953	NM_000314.4	27	Tat/Gat																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563174	21563174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	189	802	1	ENST00000382592.4:c.745C>A	p.Gln249Lys	p.Q249K	ENST00000382592	NM_014572.2	249	Cag/Aag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40469199	40469199	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	117	271	0	ENST00000264657.5:c.2144+1G>A		p.X715_splice	ENST00000264657	NM_139276.2	715																																																																															
STAT3	6774	MSKCC	GRCh37	17	40475589	40475589	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0033173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	163	440	0	ENST00000264657.5:c.1653+2T>C		p.X551_splice	ENST00000264657	NM_139276.2	551																																																																															
GNA11	2767	MSKCC	GRCh37	19	3114961	3114961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	187	601	1	ENST00000078429.4:c.496C>T	p.Arg166Cys	p.R166C	ENST00000078429	NM_002067.2	166	Cgc/Tgc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589575	67589576	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAAAATTACATGAATATAACACT			P-0033173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	96	183	0	ENST00000274335.5:c.1339_1362dup	p.Lys447_Thr454dup	p.K447_T454dup	ENST00000274335		447	-/AAAAAATTACATGAATATAACACT																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151927359	151927360	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0033173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	26	56	0	ENST00000262189.6:c.2816_2817del	p.Ser939TyrfsTer10	p.S939Yfs*10	ENST00000262189	NM_170606.2	939	tCT/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	283	840	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	78	512	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
APC	324	MSKCC	GRCh37	5	112175758	112175758	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	31	352	0	ENST00000257430.4:c.4467del	p.Leu1489PhefsTer18	p.L1489Ffs*18	ENST00000257430	NM_000038.5	1489	ttA/tt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	10	116	1	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119928	70119929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	120	438	0	ENST00000245479.2:c.932dup	p.Gln312ProfsTer266	p.Q312Pfs*266	ENST00000245479	NM_000346.3	310	-/G																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117878	70117888	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGGCGGC	GCGCAGGCGGC	-			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	28	427	0	ENST00000245479.2:c.353_363del	p.Ala118GlufsTer130	p.A118Efs*130	ENST00000245479	NM_000346.3	116	GCGCAGGCGGCg/g																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9858744	9858744	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	33	404	0	ENST00000330684.3:c.2657A>G	p.Asn886Ser	p.N886S	ENST00000330684	NM_001134407.1	886	aAt/aGt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604758	48604759	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCACTTACACCGGGCCCTCCAGCTCCTAG			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	70	417	0	ENST00000342988.3:c.1581_1609dup	p.Asp537ValfsTer10	p.D537Vfs*10	ENST00000342988	NM_005359.5	527	att/atTCACTTACACCGGGCCCTCCAGCTCCTAGt																																																																														
APC	324	MSKCC	GRCh37	5	112174348	112174348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	10	244	0	ENST00000257430.4:c.3057del	p.Glu1020AsnfsTer2	p.E1020Nfs*2	ENST00000257430	NM_000038.5	1019	ggA/gg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	167	233	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039347	47039347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	196	369	0	ENST00000329236.7:c.739G>C	p.Ala247Pro	p.A247P	ENST00000329236	NM_001204466.1	247	Gcg/Ccg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244361	46244361	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	39	387	0	ENST00000334344.6:c.2455C>T	p.Gln819Ter	p.Q819*	ENST00000334344	NM_152641.2	819	Caa/Taa																																																																														
ATM	472	MSKCC	GRCh37	11	108114719	108114719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	65	435	0	ENST00000278616.4:c.536C>T	p.Ser179Leu	p.S179L	ENST00000278616	NM_000051.3	179	tCa/tTa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78425869	78425869	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	96	326	0	ENST00000370768.2:c.1576G>T	p.Ala526Ser	p.A526S	ENST00000370768	NM_003902.3	526	Gct/Tct																																																																														
TET1	80312	MSKCC	GRCh37	10	70405889	70405889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	54	534	0	ENST00000373644.4:c.3403C>T	p.His1135Tyr	p.H1135Y	ENST00000373644	NM_030625.2	1135	Cat/Tat																																																																														
STK11	6794	MSKCC	GRCh37	19	1219321	1219334	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	ACGTATATGGTGAT	ACGTATATGGTGAT	-			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	125	450	0	ENST00000326873.7:c.375-2_386del		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																															
KEAP1	9817	MSKCC	GRCh37	19	10600527	10600527	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	150	468	0	ENST00000171111.5:c.1328A>G	p.Tyr443Cys	p.Y443C	ENST00000171111	NM_203500.1	443	tAt/tGt																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170550	11170550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	138	562	0	ENST00000344626.4:c.4757C>G	p.Ser1586Cys	p.S1586C	ENST00000344626	NM_003072.3	1586	tCc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1268709	1268709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	176	713	0	ENST00000310581.5:c.2508C>G	p.Ile836Met	p.I836M	ENST00000310581	NM_198253.2	836	atC/atG																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0033180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	94	240	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16075128	16075128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	46	292	0	ENST00000268712.3:c.424G>A	p.Asp142Asn	p.D142N	ENST00000268712	NM_006311.3	142	Gat/Aat																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26029178	26029194	+	protein_altering_variant	In_Frame_Del	DEL	CATTCAGGCATGCAAGA	CATTCAGGCATGCAAGA	TT			P-0033180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	48	394	2	ENST00000435504.4:c.156_172delinsAA	p.Leu53_Ala58delinsThr	p.L53_A58delinsT	ENST00000435504		52	ccTCTTGCATGCCTGAATGca/ccAAca																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020724	26020724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	38	261	0	ENST00000357647.3:c.7C>T	p.Arg3Cys	p.R3C	ENST00000357647	NM_003529.2	3	Cgc/Tgc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396462	139396462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	126	695	0	ENST00000277541.6:c.5463G>C	p.Lys1821Asn	p.K1821N	ENST00000277541	NM_017617.3	1821	aaG/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	124	659	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430338	181430338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	30	239	0	ENST00000325404.1:c.190C>A	p.Pro64Thr	p.P64T	ENST00000325404	NM_003106.3	64	Ccc/Acc																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870848	12870848	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	81	134	1	ENST00000228872.4:c.75del	p.Lys25AsnfsTer17	p.K25Nfs*17	ENST00000228872	NM_004064.3	25	aaG/aa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39741528	39741528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	202	278	0	ENST00000361337.2:c.1415T>G	p.Val472Gly	p.V472G	ENST00000361337	NM_003286.2	472	gTc/gGc																																																																														
PARP1	142	MSKCC	GRCh37	1	226568869	226568869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	49	561	0	ENST00000366794.5:c.1200G>T	p.Lys400Asn	p.K400N	ENST00000366794	NM_001618.3	400	aaG/aaT																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63851287	63851287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	144	581	0	ENST00000279873.7:c.2065C>G	p.Pro689Ala	p.P689A	ENST00000279873	NM_032199.2	689	Cca/Gca																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741493	17741493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	183	438	1	ENST00000250003.3:c.164C>A	p.Ala55Glu	p.A55E	ENST00000250003	NM_002478.4	55	gCg/gAg																																																																														
YAP1	10413	MSKCC	GRCh37	11	102033252	102033252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	108	518	2	ENST00000282441.5:c.638C>T	p.Thr213Ile	p.T213I	ENST00000282441	NM_001130145.2	213	aCa/aTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49446856	49446856	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	88	394	0	ENST00000301067.7:c.955-1G>T		p.X319_splice	ENST00000301067	NM_003482.3	319																																																																															
FANCA	2175	MSKCC	GRCh37	16	89831472	89831472	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	65	426	0	ENST00000389301.3:c.2604T>G	p.Phe868Leu	p.F868L	ENST00000389301	NM_000135.2	868	ttT/ttG																																																																														
NF1	4763	MSKCC	GRCh37	17	29560179	29560179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	28	335	0	ENST00000358273.4:c.3656G>T	p.Gly1219Val	p.G1219V	ENST00000358273	NM_001042492.2	1219	gGa/gTa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2222179	2222179	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	223	751	0	ENST00000398665.3:c.3011A>G	p.His1004Arg	p.H1004R	ENST00000398665	NM_032482.2	1004	cAc/cGc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212578352	212578352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	19	365	0	ENST00000342788.4:c.905G>A	p.Ser302Asn	p.S302N	ENST00000342788	NM_005235.2	302	aGt/aAt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39932222	39932222	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	123	514	0	ENST00000378444.4:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000378444	NM_001123385.1	793	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	428	651	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3R3	8503	MSKCC	GRCh37	1	46531809	46531809	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	95	405	0	ENST00000262741.5:c.538A>C	p.Lys180Gln	p.K180Q	ENST00000262741	NM_003629.3	180	Aaa/Caa																																																																														
CDC73	79577	MSKCC	GRCh37	1	193181204	193181204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	44	285	0	ENST00000367435.3:c.1040C>G	p.Ala347Gly	p.A347G	ENST00000367435	NM_024529.4	347	gCa/gGa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444983	49444983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	122	477	0	ENST00000301067.7:c.2483C>T	p.Pro828Leu	p.P828L	ENST00000301067	NM_003482.3	828	cCt/cTt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245391	41245391	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	296	627	0	ENST00000357654.3:c.2157del	p.Glu720AsnfsTer16	p.E720Nfs*16	ENST00000357654	NM_007294.3	719	aaA/aa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70982076	70982076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	127	456	0	ENST00000276594.2:c.20G>C	p.Ser7Thr	p.S7T	ENST00000276594	NM_024504.3	7	aGt/aCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	253	479	2	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211491	98211491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	371	342	1	ENST00000331920.6:c.3664G>A	p.Asp1222Asn	p.D1222N	ENST00000331920	NM_000264.3	1222	Gac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	124	527	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	57	255	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	90	207	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	37	215	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	197	387	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100385	8100385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	129	558	0	ENST00000346208.3:c.359C>T	p.Thr120Met	p.T120M	ENST00000346208		120	aCg/aTg																																																																														
ATM	472	MSKCC	GRCh37	11	108123629	108123629	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148191382		P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	67	300	1	ENST00000278616.4:c.1888G>A	p.Val630Met	p.V630M	ENST00000278616	NM_000051.3	630	Gtg/Atg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28602396	28602396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	120	365	0	ENST00000241453.7:c.1972C>A	p.Leu658Ile	p.L658I	ENST00000241453	NM_004119.2	658	Ctc/Atc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554543	63554543	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	25	415	0	ENST00000307078.5:c.196G>C	p.Glu66Gln	p.E66Q	ENST00000307078	NM_004655.3	66	Gag/Cag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251789	212251789	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	34	258	0	ENST00000342788.4:c.3270A>C	p.Glu1090Asp	p.E1090D	ENST00000342788	NM_005235.2	1090	gaA/gaC																																																																														
EP300	2033	MSKCC	GRCh37	22	41523747	41523747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	116	452	0	ENST00000263253.7:c.1163G>T	p.Cys388Phe	p.C388F	ENST00000263253	NM_001429.3	388	tGc/tTc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143033768	143033768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	105	391	0	ENST00000262992.4:c.2203G>A	p.Glu735Lys	p.E735K	ENST00000262992	NM_001101669.1	735	Gaa/Aaa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32181937	32181937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	133	557	0	ENST00000375023.3:c.2117G>A	p.Cys706Tyr	p.C706Y	ENST00000375023	NM_004557.3	706	tGc/tAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8340420	8340420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	54	394	0	ENST00000356435.5:c.5176G>A	p.Glu1726Lys	p.E1726K	ENST00000356435		1726	Gaa/Aaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44966769	44966769	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	287	510	0	ENST00000377967.4:c.3993T>G	p.Cys1331Trp	p.C1331W	ENST00000377967	NM_021140.2	1331	tgT/tgG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	20	383	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TET1	80312	MSKCC	GRCh37	10	70405847	70405847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	47	439	1	ENST00000373644.4:c.3361G>A	p.Gly1121Ser	p.G1121S	ENST00000373644	NM_030625.2	1121	Ggc/Agc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38591612	38591612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	68	373	0	ENST00000299084.4:c.71G>T	p.Arg24Leu	p.R24L	ENST00000299084	NM_152594.2	24	cGa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	127	487	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221302	1221302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	89	427	2	ENST00000326873.7:c.827del	p.Gly276AlafsTer11	p.G276Afs*11	ENST00000326873	NM_000455.4	275	ccG/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295780	15295781	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	58	697	2	ENST00000263388.2:c.2346_2347delinsCT	p.Gly783Trp	p.G783W	ENST00000263388	NM_000435.2	782	caTGgg/caCTgg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9561320	9561320	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	57	429	0	ENST00000353224.5:c.462T>A	p.Asp154Glu	p.D154E	ENST00000353224	NM_177990.2	154	gaT/gaA																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31380450	31380450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	76	341	0	ENST00000328111.2:c.940G>T	p.Gly314Cys	p.G314C	ENST00000328111	NM_006892.3	314	Ggc/Tgc																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430642	181430642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	60	327	0	ENST00000325404.1:c.494G>C	p.Gly165Ala	p.G165A	ENST00000325404	NM_003106.3	165	gGc/gCc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541039	187541039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	34	256	0	ENST00000441802.2:c.6701G>A	p.Gly2234Glu	p.G2234E	ENST00000441802	NM_005245.3	2234	gGa/gAa																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045717	26045717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	49	202	0	ENST00000540144.1:c.79C>T	p.Arg27Cys	p.R27C	ENST00000540144	NM_003531.2	27	Cgt/Tgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945120	151945120	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	67	483	0	ENST00000262189.6:c.2399A>T	p.Tyr800Phe	p.Y800F	ENST00000262189	NM_170606.2	800	tAc/tTc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53226961	53226961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	72	474	0	ENST00000375401.3:c.2614G>T	p.Asp872Tyr	p.D872Y	ENST00000375401	NM_004187.3	872	Gat/Tat																																																																														
MED12	9968	MSKCC	GRCh37	X	70342984	70342984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	72	460	0	ENST00000374080.3:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000374080		509	Gaa/Aaa																																																																														
BTK	695	MSKCC	GRCh37	X	100625035	100625035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	63	430	0	ENST00000308731.7:c.342C>A	p.Phe114Leu	p.F114L	ENST00000308731	NM_000061.2	114	ttC/ttA																																																																														
STAG2	10735	MSKCC	GRCh37	X	123196968	123196968	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0033205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	54	364	0	ENST00000218089.9:c.1734C>A	p.Tyr578Ter	p.Y578*	ENST00000218089	NM_001042749.1	578	taC/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	66	446	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	44	253	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	86	330	0	ENST00000342988.3:c.1609G>C	p.Asp537His	p.D537H	ENST00000342988	NM_005359.5	537	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	155	607	0	ENST00000269305.4:c.810T>A	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttA																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31401640	31401640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	39	473	0	ENST00000344624.3:c.4024C>T	p.Arg1342Trp	p.R1342W	ENST00000344624		1342	Cgg/Tgg																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67197011	67197011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	73	288	0	ENST00000312629.5:c.254G>T	p.Arg85Leu	p.R85L	ENST00000312629	NM_003952.2	85	cGa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112173894	112173894	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	23	296	0	ENST00000257430.4:c.2606del	p.Asn869IlefsTer47	p.N869Ifs*47	ENST00000257430	NM_000038.5	868	gAa/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	76	332	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	178	380	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	177	413	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38275842	38275842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	37	319	0	ENST00000425967.3:c.1427G>A	p.Arg476Gln	p.R476Q	ENST00000425967	NM_001174067.1	476	cGg/cAg																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612642	228612642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	40	346	2	ENST00000366696.1:c.385C>T	p.Arg129Cys	p.R129C	ENST00000366696	NM_003493.2	129	Cgc/Tgc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111856571	111856571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	13	71	0	ENST00000341259.2:c.622G>A	p.Glu208Lys	p.E208K	ENST00000341259	NM_005475.2	208	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	69033206	69033206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	37	259	0	ENST00000288368.4:c.3646C>T	p.Leu1216Phe	p.L1216F	ENST00000288368	NM_024870.2	1216	Ctt/Ttt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	154	393	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0033245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	100	294	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	67	257	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11174440	11174440	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	264	512	0	ENST00000361445.4:c.7235A>T	p.Asp2412Val	p.D2412V	ENST00000361445	NM_004958.3	2412	gAc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106849	27106850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCTCAGTGACCGAAAGAA			P-0033245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	133	428	0	ENST00000324856.7:c.6461_6479dup	p.Val2162GlnfsTer2	p.V2162Qfs*2	ENST00000324856	NM_006015.4	2154	ttc/tTCCTCAGTGACCGAAAGAAtc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211002	36211003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	155	700	0	ENST00000222270.7:c.758dup	p.Pro254ThrfsTer80	p.P254Tfs*80	ENST00000222270	NM_014727.1	251	-/C																																																																														
ACVR1	90	MSKCC	GRCh37	2	158617469	158617469	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	77	355	0	ENST00000263640.3:c.1187T>G	p.Phe396Cys	p.F396C	ENST00000263640	NM_001105.4	396	tTc/tGc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591268	67591268	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	88	303	0	ENST00000274335.5:c.1767del	p.Arg590GlyfsTer5	p.R590Gfs*5	ENST00000274335		589	gTt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0033249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	1425	532	4	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098966	178098966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	379	193	0	ENST00000397062.3:c.79G>T	p.Asp27Tyr	p.D27Y	ENST00000397062	NM_006164.4	27	Gat/Tat																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58701094	58701094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	60	374	0	ENST00000305921.3:c.685G>A	p.Glu229Lys	p.E229K	ENST00000305921	NM_003620.3	229	Gaa/Aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	48878114	48878115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	33	47	0	ENST00000267163.4:c.68dup	p.Pro24AlafsTer7	p.P24Afs*7	ENST00000267163	NM_000321.2	22	-/C																																																																														
INHBA	3624	MSKCC	GRCh37	7	41739669	41739669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	814	501	0	ENST00000242208.4:c.304G>C	p.Glu102Gln	p.E102Q	ENST00000242208	NM_002192.2	102	Gag/Cag																																																																														
TET1	80312	MSKCC	GRCh37	10	70405958	70405958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	27	405	0	ENST00000373644.4:c.3472C>T	p.Arg1158Trp	p.R1158W	ENST00000373644	NM_030625.2	1158	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108173724	108173724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	53	309	0	ENST00000278616.4:c.5464G>A	p.Glu1822Lys	p.E1822K	ENST00000278616	NM_000051.3	1822	Gaa/Aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	29	358	0	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349514	73349514	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	45	270	0	ENST00000377767.4:c.823-1G>C		p.X275_splice	ENST00000377767	NM_014953.3	275																																																																															
PRKD1	5587	MSKCC	GRCh37	14	30396572	30396572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	22	192	0	ENST00000331968.5:c.147C>G	p.Ile49Met	p.I49M	ENST00000331968	NM_002742.2	49	atC/atG																																																																														
TSC2	7249	MSKCC	GRCh37	16	2138578	2138578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	68	465	0	ENST00000219476.3:c.5391C>G	p.Ile1797Met	p.I1797M	ENST00000219476	NM_000548.3	1797	atC/atG																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7990667	7990667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	52	456	0	ENST00000319144.4:c.94G>C	p.Glu32Gln	p.E32Q	ENST00000319144	NM_001139.2	32	Gag/Cag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40498622	40498622	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	70	371	0	ENST00000264657.5:c.238C>T	p.Gln80Ter	p.Q80*	ENST00000264657	NM_139276.2	80	Cag/Tag																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244249	41244249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	96	583	0	ENST00000357654.3:c.3299G>A	p.Gly1100Glu	p.G1100E	ENST00000357654	NM_007294.3	1100	gGa/gAa																																																																														
BRCA1	672	MSKCC	GRCh37	17	41244327	41244327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	106	619	2	ENST00000357654.3:c.3221G>A	p.Arg1074Lys	p.R1074K	ENST00000357654	NM_007294.3	1074	aGa/aAa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15355303	15355303	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	33	277	0	ENST00000263377.2:c.2320del	p.Gln774SerfsTer20	p.Q774Sfs*20	ENST00000263377	NM_058243.2	774	Cag/ag																																																																														
AXL	558	MSKCC	GRCh37	19	41726642	41726642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	80	463	0	ENST00000301178.4:c.187G>A	p.Glu63Lys	p.E63K	ENST00000301178	NM_021913.4	63	Gag/Aag																																																																														
AXL	558	MSKCC	GRCh37	19	41754431	41754431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	63	404	0	ENST00000301178.4:c.1550G>A	p.Gly517Asp	p.G517D	ENST00000301178	NM_021913.4	517	gGc/gAc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25467080	25467080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	32	407	0	ENST00000264709.3:c.1795G>C	p.Glu599Gln	p.E599Q	ENST00000264709	NM_175629.2	599	Gag/Cag																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376218	225376218	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	80	472	0	ENST00000264414.4:c.736G>C	p.Glu246Gln	p.E246Q	ENST00000264414	NM_003590.4	246	Gaa/Caa																																																																														
EP300	2033	MSKCC	GRCh37	22	41545883	41545883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	102	471	0	ENST00000263253.7:c.2498C>T	p.Ser833Leu	p.S833L	ENST00000263253	NM_001429.3	833	tCg/tTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268805	41268805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	90	364	0	ENST00000349496.5:c.1043C>T	p.Ser348Phe	p.S348F	ENST00000349496	NM_001904.3	348	tCt/tTt																																																																														
ATR	545	MSKCC	GRCh37	3	142186856	142186856	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	47	341	0	ENST00000350721.4:c.6607C>G	p.His2203Asp	p.H2203D	ENST00000350721	NM_001184.3	2203	Cat/Gat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	99	424	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	45	385	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271277	153271277	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	31	165	0	ENST00000281708.4:c.502-1G>C		p.X168_splice	ENST00000281708	NM_033632.3	168																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31323370	31323370	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	111	311	0	ENST00000412585.2:c.620-1G>C		p.X207_splice	ENST00000412585	NM_005514.6	207																																																																															
RECQL4	9401	MSKCC	GRCh37	8	145739743	145739743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	37	399	0	ENST00000428558.2:c.1708C>T	p.Arg570Trp	p.R570W	ENST00000428558	NM_004260.3	570	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0033255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	118	308	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578520	7578520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	296	591	1	ENST00000269305.4:c.410T>A	p.Leu137Gln	p.L137Q	ENST00000269305	NM_001126112.2	137	cTg/cAg																																																																														
CALR	811	MSKCC	GRCh37	19	13049949	13049949	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0033255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	25	242	0	ENST00000316448.5:c.93C>G	p.Asp31Glu	p.D31E	ENST00000316448	NM_004343.3	31	gaC/gaG																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42851168	42851168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	80	380	1	ENST00000398585.3:c.725G>A	p.Gly242Glu	p.G242E	ENST00000398585	NM_001135099.1	242	gGa/gAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268197	153268197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	100	199	0	ENST00000281708.4:c.611C>T	p.Ala204Val	p.A204V	ENST00000281708	NM_033632.3	204	gCa/gTa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80109427	80109427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	79	311	0	ENST00000265081.6:c.2680A>G	p.Ile894Val	p.I894V	ENST00000265081	NM_002439.4	894	Att/Gtt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0033226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	52	352	5	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
BRD4	23476	MSKCC	GRCh37	19	15349562	15349562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	48	847	0	ENST00000263377.2:c.4012C>T	p.Arg1338Trp	p.R1338W	ENST00000263377	NM_058243.2	1338	Cgg/Tgg																																																																														
CRKL	1399	MSKCC	GRCh37	22	21288341	21288341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	102	647	0	ENST00000354336.3:c.586A>G	p.Asn196Asp	p.N196D	ENST00000354336	NM_005207.3	196	Aac/Gac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0013445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	270	446	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25463592	25463592	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	251	580	1	ENST00000264709.3:c.2090A>T	p.Glu697Val	p.E697V	ENST00000264709	NM_175629.2	697	gAg/gTg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100451	8100451	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	109	680	0	ENST00000346208.3:c.425C>A	p.Ser142Ter	p.S142*	ENST00000346208		142	tCg/tAg																																																																														
ATM	472	MSKCC	GRCh37	11	108173634	108173634	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	38	295	0	ENST00000278616.4:c.5374A>G	p.Ile1792Val	p.I1792V	ENST00000278616	NM_000051.3	1792	Ata/Gta																																																																														
IRS1	3667	MSKCC	GRCh37	2	227659982	227659984	+	inframe_deletion	In_Frame_Del	DEL	CCC	CCC	-			P-0013445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	262	620	0	ENST00000305123.5:c.3471_3473del	p.Gly1158del	p.G1158del	ENST00000305123	NM_005544.2	1157	ggGGGa/gga																																																																														
ATRX	546	MSKCC	GRCh37	X	76938683	76938683	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	255	679	0	ENST00000373344.5:c.2065del	p.Gln689LysfsTer7	p.Q689Kfs*7	ENST00000373344	NM_000489.3	689	Caa/aa																																																																														
AR	367	MSKCC	GRCh37	X	66765080	66765081	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0013445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	354	712	0	ENST00000374690.3:c.92_93delinsTT	p.Arg31Leu	p.R31L	ENST00000374690	NM_000044.3	31	cGC/cTT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578234	7578234	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021647-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			48	145	663	13	ENST00000269305.4:c.615T>A	p.Tyr205Ter	p.Y205*	ENST00000269305	NM_001126112.2	205	taT/taA																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939436	36939436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021647-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			262	191	753	8	ENST00000361632.4:c.414C>A	p.Ser138Arg	p.S138R	ENST00000361632		138	agC/agA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027470-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			525	164	434	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
RHOA	387	MSKCC	GRCh37	3	49412905	49412905	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027470-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	292	729	0	ENST00000418115.1:c.118G>C	p.Glu40Gln	p.E40Q	ENST00000418115	NM_001664.2	40	Gag/Cag																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793008	33793010	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0027470-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			145	10	88	0	ENST00000498907.2:c.311_313del	p.Gly104del	p.G104del	ENST00000498907	NM_004364.3	104	gGCGac/gac																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81946225	81946225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027470-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			567	56	524	0	ENST00000359376.3:c.1958G>A	p.Arg653His	p.R653H	ENST00000359376	NM_002661.3	653	cGc/cAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351980	89351980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027470-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			82	1006	812	0	ENST00000301030.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000301030	NM_001256183.1	324	Gaa/Aaa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125497530	125497530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027470-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			408	158	326	0	ENST00000428830.2:c.94G>A	p.Glu32Lys	p.E32K	ENST00000428830	NM_001114121.2	32	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578512	7578532	+	inframe_deletion	In_Frame_Del	DEL	TCTTGGCCAGTTGGCAAAACA	TCTTGGCCAGTTGGCAAAACA	-			P-0027470-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			99	975	716	0	ENST00000269305.4:c.398_418del	p.Met133_Lys139del	p.M133_K139del	ENST00000269305	NM_001126112.2	133	aTGTTTTGCCAACTGGCCAAGAcc/acc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212488681	212488681	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027470-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			296	216	507	0	ENST00000342788.4:c.2168T>C	p.Val723Ala	p.V723A	ENST00000342788	NM_005235.2	723	gTc/gCc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212530118	212530118	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027470-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			230	213	473	0	ENST00000342788.4:c.1801A>C	p.Asn601His	p.N601H	ENST00000342788	NM_005235.2	601	Aac/Cac																																																																														
FANCA	2175	MSKCC	GRCh37	16	89805086	89805086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027470-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			419	220	537	0	ENST00000389301.3:c.4291G>A	p.Glu1431Lys	p.E1431K	ENST00000389301	NM_000135.2	1431	Gag/Aag																																																																														
PMS1	5378	MSKCC	GRCh37	2	190728520	190728520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027470-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			287	155	432	0	ENST00000441310.2:c.1908G>C	p.Lys636Asn	p.K636N	ENST00000441310	NM_000534.4	636	aaG/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	442	409	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	226	423	0	ENST00000263967.3:c.323G>T	p.Arg108Leu	p.R108L	ENST00000263967	NM_006218.2	108	cGt/cTt																																																																														
BTK	695	MSKCC	GRCh37	X	100615625	100615625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	76	587	0	ENST00000308731.7:c.707G>C	p.Arg236Pro	p.R236P	ENST00000308731	NM_000061.2	236	cGg/cCg																																																																														
AXL	558	MSKCC	GRCh37	19	41754512	41754512	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0033008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	81	584	0	ENST00000301178.4:c.1631A>G	p.Glu544Gly	p.E544G	ENST00000301178	NM_021913.4	544	gAg/gGg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242646	16242646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	28	418	0	ENST00000375759.3:c.1267C>T	p.Arg423Cys	p.R423C	ENST00000375759	NM_015001.2	423	Cgc/Tgc																																																																														
CDC42	998	MSKCC	GRCh37	1	22413036	22413036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	14	265	0	ENST00000344548.3:c.283G>A	p.Glu95Lys	p.E95K	ENST00000344548	NM_001039802.1	95	Gaa/Aaa																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932232	36932232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	38	563	1	ENST00000361632.4:c.2237C>T	p.Thr746Ile	p.T746I	ENST00000361632		746	aCc/aTc																																																																														
RAD54L	8438	MSKCC	GRCh37	1	46743846	46743846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	69	610	0	ENST00000371975.4:c.2136G>T	p.Lys712Asn	p.K712N	ENST00000371975	NM_003579.3	712	aaG/aaT																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120457933	120457933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	30	405	0	ENST00000256646.2:c.7412C>T	p.Ala2471Val	p.A2471V	ENST00000256646	NM_024408.3	2471	gCg/gTg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845627	63845627	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	12	205	0	ENST00000279873.7:c.1366G>T	p.Glu456Ter	p.E456*	ENST00000279873	NM_032199.2	456	Gaa/Taa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	48	570	0	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692978	89692978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	45	485	0	ENST00000371953.3:c.462C>A	p.Phe154Leu	p.F154L	ENST00000371953	NM_000314.4	154	ttC/ttA																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161456	2161456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	30	515	0	ENST00000434045.2:c.71G>A	p.Arg24His	p.R24H	ENST00000434045	NM_001127598.1	24	cGc/cAc																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316389	14316389	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	44	528	0	ENST00000256196.4:c.216A>C	p.Gln72His	p.Q72H	ENST00000256196		72	caA/caC																																																																														
ATM	472	MSKCC	GRCh37	11	108216596	108216596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	20	370	0	ENST00000278616.4:c.8545C>T	p.Arg2849Ter	p.R2849*	ENST00000278616	NM_000051.3	2849	Cga/Tga																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022684	12022684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	29	448	0	ENST00000396373.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000396373	NM_001987.4	264	Cgc/Tgc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435295	18435295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	20	344	1	ENST00000266497.5:c.280C>T	p.Arg94Cys	p.R94C	ENST00000266497		94	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444297	49444297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	53	755	0	ENST00000301067.7:c.3074C>T	p.Ser1025Leu	p.S1025L	ENST00000301067	NM_003482.3	1025	tCg/tTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	46	544	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56493621	56493621	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	13	290	0	ENST00000267101.3:c.2938-1G>T		p.X980_splice	ENST00000267101	NM_001982.3	980																																																																															
ERBB3	2065	MSKCC	GRCh37	12	56495034	56495034	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150312718		P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	35	526	0	ENST00000267101.3:c.3391G>A	p.Ala1131Thr	p.A1131T	ENST00000267101	NM_001982.3	1131	Gcc/Acc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495468	56495468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	31	616	0	ENST00000267101.3:c.3658C>A	p.Leu1220Met	p.L1220M	ENST00000267101	NM_001982.3	1220	Ctg/Atg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57858468	57858468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	31	461	0	ENST00000228682.2:c.206C>A	p.Ser69Tyr	p.S69Y	ENST00000228682	NM_005269.2	69	tCt/tAt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864956	57864956	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	29	623	0	ENST00000228682.2:c.2433A>C	p.Gln811His	p.Q811H	ENST00000228682	NM_005269.2	811	caA/caC																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118710	115118710	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	31	580	0	ENST00000257566.3:c.631A>G	p.Asn211Asp	p.N211D	ENST00000257566	NM_016569.3	211	Aac/Gac																																																																														
POLE	5426	MSKCC	GRCh37	12	133253151	133253151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	38	396	0	ENST00000320574.5:c.890C>T	p.Ser297Phe	p.S297F	ENST00000320574	NM_006231.2	297	tCc/tTc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589759	28589759	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	27	479	0	ENST00000241453.7:c.2621A>T	p.Tyr874Phe	p.Y874F	ENST00000241453	NM_004119.2	874	tAt/tTt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28611388	28611388	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	43	561	0	ENST00000241453.7:c.1243G>T	p.Glu415Ter	p.E415*	ENST00000241453	NM_004119.2	415	Gaa/Taa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32893318	32893318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	28	337	0	ENST00000380152.3:c.172G>A	p.Glu58Lys	p.E58K	ENST00000380152		58	Gaa/Aaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32911921	32911921	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	28	510	0	ENST00000380152.3:c.3429A>C	p.Glu1143Asp	p.E1143D	ENST00000380152		1143	gaA/gaC																																																																														
RB1	5925	MSKCC	GRCh37	13	48941654	48941654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	15	268	0	ENST00000267163.4:c.964G>A	p.Glu322Lys	p.E322K	ENST00000267163	NM_000321.2	322	Gaa/Aaa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103525652	103525652	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	21	409	1	ENST00000355739.4:c.2923G>T	p.Glu975Ter	p.E975*	ENST00000355739	NM_000123.3	975	Gaa/Taa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103528224	103528224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	16	228	0	ENST00000355739.4:c.3532C>T	p.Arg1178Cys	p.R1178C	ENST00000355739	NM_000123.3	1178	Cgt/Tgt																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38643719	38643719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	52	698	0	ENST00000299084.4:c.1189G>A	p.Asp397Asn	p.D397N	ENST00000299084	NM_152594.2	397	Gac/Aac																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99434776	99434776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	38	493	0	ENST00000268035.6:c.863C>T	p.Ala288Val	p.A288V	ENST00000268035	NM_000875.3	288	gCc/gTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72992964	72992964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	42	790	1	ENST00000268489.5:c.1081G>A	p.Gly361Arg	p.G361R	ENST00000268489	NM_006885.3	361	Gga/Aga																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969848	81969848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	27	457	1	ENST00000359376.3:c.2917G>A	p.Asp973Asn	p.D973N	ENST00000359376	NM_002661.3	973	Gac/Aac																																																																														
NF1	4763	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	29	350	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627887	37627887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	55	596	1	ENST00000447079.4:c.1802C>A	p.Ser601Tyr	p.S601Y	ENST00000447079	NM_015083.1	601	tCt/tAt																																																																														
RARA	5914	MSKCC	GRCh37	17	38504686	38504686	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	33	596	1	ENST00000254066.5:c.297C>A	p.His99Gln	p.H99Q	ENST00000254066	NM_000964.3	99	caC/caA																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2199895	2199895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	30	591	0	ENST00000398665.3:c.664G>A	p.Asp222Asn	p.D222N	ENST00000398665	NM_032482.2	222	Gat/Aat																																																																														
INSR	3643	MSKCC	GRCh37	19	7267638	7267638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	63	590	1	ENST00000302850.5:c.370G>A	p.Glu124Lys	p.E124K	ENST00000302850	NM_000208.2	124	Gag/Aag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279331	18279331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	27	399	0	ENST00000222254.8:c.1783C>A	p.Leu595Met	p.L595M	ENST00000222254	NM_005027.3	595	Ctg/Atg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229409	36229409	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	24	425	0	ENST00000222270.7:c.8099A>G	p.Lys2700Arg	p.K2700R	ENST00000222270	NM_014727.1	2700	aAg/aGg																																																																														
AXL	558	MSKCC	GRCh37	19	41727103	41727103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	38	678	1	ENST00000301178.4:c.361C>A	p.Leu121Met	p.L121M	ENST00000301178	NM_021913.4	121	Ctg/Atg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716272	52716272	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	33	577	0	ENST00000322088.6:c.716A>T	p.Asp239Val	p.D239V	ENST00000322088	NM_014225.5	239	gAt/gTt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47690230	47690230	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	52	415	0	ENST00000233146.2:c.1447G>T	p.Glu483Ter	p.E483*	ENST00000233146	NM_000251.2	483	Gaa/Taa																																																																														
CASP8	841	MSKCC	GRCh37	2	202139656	202139656	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs146816437		P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	32	279	0	ENST00000358485.4:c.817G>T	p.Glu273Ter	p.E273*	ENST00000358485	NM_001080125.1	273	Gaa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212812259	212812259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	20	341	0	ENST00000342788.4:c.317G>A	p.Arg106His	p.R106H	ENST00000342788	NM_005235.2	106	cGt/cAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790089	40790089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	39	545	1	ENST00000373198.4:c.2642G>A	p.Arg881Gln	p.R881Q	ENST00000373198	NM_133170.3	881	cGg/cAg																																																																														
RTEL1	51750	MSKCC	GRCh37	20	62323133	62323133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	23	404	0	ENST00000508582.2:c.2667G>T	p.Lys889Asn	p.K889N	ENST00000508582		889	aaG/aaT																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162904	47162904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	40	449	0	ENST00000409792.3:c.3222G>T	p.Lys1074Asn	p.K1074N	ENST00000409792	NM_014159.6	1074	aaG/aaT																																																																														
SHQ1	55164	MSKCC	GRCh37	3	72799481	72799481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144498351		P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	44	646	0	ENST00000325599.8:c.1688G>A	p.Arg563His	p.R563H	ENST00000325599	NM_018130.2	563	cGc/cAc																																																																														
ATR	545	MSKCC	GRCh37	3	142272768	142272768	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	52	525	0	ENST00000350721.4:c.2431A>C	p.Asn811His	p.N811H	ENST00000350721	NM_001184.3	811	Aat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	32	381	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	9	393	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185198253	185198253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	45	466	2	ENST00000265026.3:c.2735C>T	p.Ala912Val	p.A912V	ENST00000265026	NM_004721.4	912	gCc/gTc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156716	106156716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	27	289	0	ENST00000380013.4:c.1617G>T	p.Glu539Asp	p.E539D	ENST00000380013	NM_001127208.2	539	gaG/gaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540061	187540061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	26	364	0	ENST00000441802.2:c.7679C>T	p.Ala2560Val	p.A2560V	ENST00000441802	NM_005245.3	2560	gCg/gTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	33	265	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86682712	86682712	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	12	259	0	ENST00000274376.6:c.2917G>T	p.Glu973Ter	p.E973*	ENST00000274376	NM_002890.2	973	Gaa/Taa																																																																														
NPM1	4869	MSKCC	GRCh37	5	170818713	170818713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	23	359	0	ENST00000296930.5:c.262T>A	p.Ser88Thr	p.S88T	ENST00000296930	NM_002520.6	88	Tcc/Acc																																																																														
E2F3	1871	MSKCC	GRCh37	6	20481448	20481448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	20	249	0	ENST00000346618.3:c.517C>T	p.Pro173Ser	p.P173S	ENST00000346618	NM_001949.4	173	Ccc/Tcc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956553	93956553	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	47	435	1	ENST00000369303.4:c.2683C>T	p.Arg895Ter	p.R895*	ENST00000369303	NM_004440.3	895	Cga/Tga																																																																														
ROS1	6098	MSKCC	GRCh37	6	117686836	117686836	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	17	320	0	ENST00000368508.3:c.2881A>C	p.Asn961His	p.N961H	ENST00000368508	NM_002944.2	961	Aat/Cat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521848	157521848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	22	381	0	ENST00000346085.5:c.4120C>T	p.Arg1374Cys	p.R1374C	ENST00000346085	NM_020732.3	1374	Cgc/Tgc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983863	2983863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	29	597	1	ENST00000396946.4:c.667C>T	p.Arg223Ter	p.R223*	ENST00000396946	NM_032415.4	223	Cga/Tga																																																																														
HGF	3082	MSKCC	GRCh37	7	81392080	81392080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	36	430	0	ENST00000222390.5:c.197C>T	p.Thr66Ile	p.T66I	ENST00000222390	NM_000601.4	66	aCt/aTt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508514	106508514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	11	215	0	ENST00000359195.3:c.508G>A	p.Asp170Asn	p.D170N	ENST00000359195	NM_002649.2	170	Gac/Aac																																																																														
NBN	4683	MSKCC	GRCh37	8	90949278	90949278	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	19	253	0	ENST00000265433.3:c.2210A>C	p.Glu737Ala	p.E737A	ENST00000265433	NM_002485.4	737	gAg/gCg																																																																														
NBN	4683	MSKCC	GRCh37	8	90982713	90982713	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	32	358	0	ENST00000265433.3:c.775G>T	p.Glu259Ter	p.E259*	ENST00000265433	NM_002485.4	259	Gaa/Taa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566283	141566283	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	26	459	0	ENST00000220592.5:c.1129G>T	p.Glu377Ter	p.E377*	ENST00000220592	NM_012154.3	377	Gaa/Taa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8331724	8331724	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	30	345	0	ENST00000356435.5:c.5392C>G	p.Arg1798Gly	p.R1798G	ENST00000356435		1798	Cga/Gga																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101908873	101908873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200595614		P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	38	563	1	ENST00000374994.4:c.1237C>T	p.Arg413Ter	p.R413*	ENST00000374994	NM_004612.2	413	Cga/Tga																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127920662	127920662	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	15	331	0	ENST00000373547.4:c.238-1G>T		p.X80_splice	ENST00000373547	NM_002721.4	80																																																																															
TRAF2	7186	MSKCC	GRCh37	9	139793317	139793317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	41	568	1	ENST00000247668.2:c.125G>A	p.Arg42His	p.R42H	ENST00000247668	NM_021138.3	42	cGc/cAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44732929	44732929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	14	342	0	ENST00000377967.4:c.132G>T	p.Glu44Asp	p.E44D	ENST00000377967	NM_021140.2	44	gaG/gaT																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412899	63412899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	49	751	0	ENST00000330258.3:c.268C>T	p.Leu90Phe	p.L90F	ENST00000330258	NM_152424.3	90	Ctc/Ttc																																																																														
AR	367	MSKCC	GRCh37	X	66765049	66765049	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	35	658	0	ENST00000374690.3:c.61G>T	p.Gly21Ter	p.G21*	ENST00000374690	NM_000044.3	21	Gga/Tga																																																																														
BTK	695	MSKCC	GRCh37	X	100609658	100609658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	33	371	0	ENST00000308731.7:c.1591G>A	p.Asp531Asn	p.D531N	ENST00000308731	NM_000061.2	531	Gat/Aat																																																																														
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			478	33	269	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			490	59	406	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			345	88	570	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																														
AR	367	MSKCC	GRCh37	X	66765159	66765200	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			178	125	93	0	ENST00000374690.3:c.198_239del	p.Gln67_Gln80del	p.Q67_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																														
TP53	7157	MSKCC	GRCh37	17	7573982	7573983	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			460	31	617	1	ENST00000269305.4:c.1044_1045delinsTT	p.Leu348_Glu349delinsPheTer	p.L348_E349delinsF*	ENST00000269305	NM_001126112.2	348	ttGGaa/ttTTaa																																																																														
MGA	23269	MSKCC	GRCh37	15	42026794	42026794	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			305	162	310	0	ENST00000219905.7:c.3916+2T>A		p.X1306_splice	ENST00000219905	NM_001164273.1	1306																																																																															
TCF3	6929	MSKCC	GRCh37	19	1615695	1615695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018607-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			469	283	672	0	ENST00000344749.5:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000344749	NM_001136139.2	526	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057789	27057790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0032950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	266	1010	0	ENST00000324856.7:c.1498_1499insTT	p.Tyr500PhefsTer120	p.Y500Ffs*120	ENST00000324856	NM_006015.4	499	-/TT																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060610	38060611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	195	994	0	ENST00000250448.2:c.1378dup	p.Tyr460LeufsTer98	p.Y460Lfs*98	ENST00000250448	NM_004496.3	460	tac/tTac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	161	498	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	130	292	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	438	503	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	239	401	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188865	32188865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138205668		P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	254	485	1	ENST00000375023.3:c.689G>A	p.Arg230His	p.R230H	ENST00000375023	NM_004557.3	230	cGt/cAt																																																																														
ALK	238	MSKCC	GRCh37	2	30143521	30143521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	137	218	0	ENST00000389048.3:c.5G>A	p.Gly2Glu	p.G2E	ENST00000389048	NM_004304.4	2	gGa/gAa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244283	46244283	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	227	309	0	ENST00000334344.6:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000334344	NM_152641.2	793	Caa/Taa																																																																														
TET2	54790	MSKCC	GRCh37	4	106196243	106196243	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	179	237	0	ENST00000380013.4:c.4576C>T	p.Gln1526Ter	p.Q1526*	ENST00000380013	NM_001127208.2	1526	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187557362	187557362	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	262	437	0	ENST00000441802.2:c.4000C>T	p.Gln1334Ter	p.Q1334*	ENST00000441802	NM_005245.3	1334	Caa/Taa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44929235	44929235	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	316	523	0	ENST00000377967.4:c.2335C>T	p.Gln779Ter	p.Q779*	ENST00000377967	NM_021140.2	779	Cag/Tag																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25457254	25457254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	266	427	0	ENST00000264709.3:c.2633C>T	p.Ser878Phe	p.S878F	ENST00000264709	NM_175629.2	878	tCc/tTc																																																																														
IL10	3586	MSKCC	GRCh37	1	206945647	206945647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	241	477	0	ENST00000423557.1:c.134G>A	p.Arg45Gln	p.R45Q	ENST00000423557	NM_000572.2	45	cGa/cAa																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198265489	198265489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	232	547	0	ENST00000335508.6:c.2668G>A	p.Glu890Lys	p.E890K	ENST00000335508	NM_012433.2	890	Gaa/Aaa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16242715	16242715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	267	514	0	ENST00000375759.3:c.1336G>A	p.Glu446Lys	p.E446K	ENST00000375759	NM_015001.2	446	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023153	27023153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	24	31	0	ENST00000324856.7:c.259G>T	p.Gly87Ter	p.G87*	ENST00000324856	NM_006015.4	87	Gga/Tga																																																																														
SESN2	83667	MSKCC	GRCh37	1	28605630	28605630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	234	429	0	ENST00000253063.3:c.1234G>A	p.Glu412Lys	p.E412K	ENST00000253063	NM_031459.4	412	Gag/Aag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115801	8115801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	247	469	0	ENST00000346208.3:c.1147G>A	p.Glu383Lys	p.E383K	ENST00000346208		383	Gag/Aag																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859634	57859634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	225	457	0	ENST00000228682.2:c.688G>A	p.Glu230Lys	p.E230K	ENST00000228682	NM_005269.2	230	Gaa/Aaa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396767	396767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	264	498	0	ENST00000262320.3:c.259G>A	p.Glu87Lys	p.E87K	ENST00000262320	NM_003502.3	87	Gag/Aag																																																																														
TSC2	7249	MSKCC	GRCh37	16	2098728	2098728	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	297	485	1	ENST00000219476.3:c.114del	p.Phe38LeufsTer8	p.F38Lfs*8	ENST00000219476	NM_000548.3	38	Ttt/tt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640791	3640791	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	323	598	0	ENST00000294008.3:c.2848G>C	p.Glu950Gln	p.E950Q	ENST00000294008	NM_032444.2	950	Gag/Cag																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897339	78897339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	297	543	0	ENST00000306801.3:c.2674G>A	p.Val892Met	p.V892M	ENST00000306801	NM_020761.2	892	Gtg/Atg																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855817	45855817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	310	596	0	ENST00000391945.4:c.1993G>A	p.Gly665Ser	p.G665S	ENST00000391945	NM_000400.3	665	Ggt/Agt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422504	225422504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	54	471	0	ENST00000264414.4:c.136C>A	p.Arg46Ser	p.R46S	ENST00000264414	NM_003590.4	46	Cgt/Agt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663226	227663226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	285	474	0	ENST00000305123.5:c.229G>A	p.Asp77Asn	p.D77N	ENST00000305123	NM_005544.2	77	Gac/Aac																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42866475	42866475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	395	693	1	ENST00000398585.3:c.157G>A	p.Glu53Lys	p.E53K	ENST00000398585	NM_001135099.1	53	Gaa/Aaa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440379	52440379	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	131	424	0	ENST00000460680.1:c.673G>C	p.Asp225His	p.D225H	ENST00000460680	NM_004656.3	225	Gac/Cac																																																																														
PLK2	10769	MSKCC	GRCh37	5	57751429	57751429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	198	361	0	ENST00000274289.3:c.1562C>T	p.Ser521Leu	p.S521L	ENST00000274289	NM_006622.3	521	tCa/tTa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672477	30672477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	355	628	0	ENST00000376406.3:c.4483G>C	p.Glu1495Gln	p.E1495Q	ENST00000376406	NM_014641.2	1495	Gag/Cag																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652126	36652145	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGAGGCCGGGATGAGTTG	GGCGAGGCCGGGATGAGTTG	-			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	296	523	0	ENST00000244741.5:c.250_269del	p.Gly85ArgfsTer37	p.G85Rfs*37	ENST00000244741	NM_000389.4	83	cGGCGAGGCCGGGATGAGTTG/c																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793907	89793907	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	112	239	0	ENST00000336032.3:c.976C>T	p.Gln326Ter	p.Q326*	ENST00000336032	NM_006813.2	326	Caa/Taa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56494990	56494990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	218	423	0	ENST00000267101.3:c.3347G>A	p.Arg1116Lys	p.R1116K	ENST00000267101	NM_001982.3	1116	aGg/aAg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30323856	30323856	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0033136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	128	357	0	ENST00000322652.5:c.1834G>T	p.Glu612Ter	p.E612*	ENST00000322652	NM_015355.2	612	Gaa/Taa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467462	66467462	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	82	309	0	ENST00000273854.3:c.807T>A	p.Asp269Glu	p.D269E	ENST00000273854	NM_004439.5	269	gaT/gaA																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664864	138664893	+	inframe_deletion	In_Frame_Del	DEL	GCGGCTGCAGCCGCAGCTGCTGCAGCCGCT	GCGGCTGCAGCCGCAGCTGCTGCAGCCGCT	-			P-0033136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	67	92	0	ENST00000330315.3:c.672_701del	p.Ala225_Ala234del	p.A225_A234del	ENST00000330315	NM_023067.3	224	gcAGCGGCTGCAGCAGCTGCGGCTGCAGCCGCg/gcg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	150	479	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0033139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	110	226	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250870	153250870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	64	367	0	ENST00000281708.4:c.1190G>A	p.Gly397Asp	p.G397D	ENST00000281708	NM_033632.3	397	gGt/gAt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589625	67589627	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0033139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	93	216	0	ENST00000274335.5:c.1390_1392del	p.Asp464del	p.D464del	ENST00000274335		463	tATGat/tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420802	49420802	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	223	522	0	ENST00000301067.7:c.14947A>T	p.Lys4983Ter	p.K4983*	ENST00000301067	NM_003482.3	4983	Aaa/Taa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412351	63412351	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	533	706	0	ENST00000330258.3:c.816del	p.Lys273SerfsTer9	p.K273Sfs*9	ENST00000330258	NM_152424.3	272	ccC/cc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	34	465	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	57	628	1	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
MPL	4352	MSKCC	GRCh37	1	43803817	43803817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs148434485		P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	45	639	1	ENST00000372470.3:c.127C>T	p.Arg43Ter	p.R43*	ENST00000372470	NM_005373.2	43	Cga/Tga																																																																														
TBX3	6926	MSKCC	GRCh37	12	115114116	115114116	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	36	431	0	ENST00000257566.3:c.1099+2T>G		p.X367_splice	ENST00000257566	NM_016569.3	367																																																																															
SMAD3	4088	MSKCC	GRCh37	15	67477161	67477161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	38	490	0	ENST00000327367.4:c.968G>A	p.Arg323His	p.R323H	ENST00000327367	NM_005902.3	323	cGc/cAc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391121	89391121	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	42	451	0	ENST00000336596.2:c.1187T>C	p.Val396Ala	p.V396A	ENST00000336596	NM_005233.5	396	gTg/gCg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674219	86674219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	28	256	0	ENST00000274376.6:c.2351C>T	p.Ala784Val	p.A784V	ENST00000274376	NM_002890.2	784	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	99	795	1	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGTG			P-0033156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	111	552	0	ENST00000275493.2:c.2303_2304insTGTGGCCAG	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGTGtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006143-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	26	488	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006143-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	24	457	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006143-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	24	457	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006143-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	24	457	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006143-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			656	55	625	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	88	270	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
POLE	5426	MSKCC	GRCh37	12	133252394	133252394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	80	265	0	ENST00000320574.5:c.1033C>T	p.Gln345Ter	p.Q345*	ENST00000320574	NM_006231.2	345	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577062	7577062	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	632	253	0	ENST00000269305.4:c.876delA	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	292	aaA/aa																																																																														
ALK	238	MSKCC	GRCh37	2	29430035	29430035	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0032657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	208	208	0	ENST00000389048.3:c.3938+2T>A		p.X1313_splice	ENST00000389048	NM_004304.4	1313																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032824-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	396	456	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032824-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	281	542	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032824-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	128	430	1	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032824-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	78	203	0	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032824-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	84	277	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859658	57859658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032824-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	159	434	0	ENST00000228682.2:c.712C>T	p.Arg238Cys	p.R238C	ENST00000228682	NM_005269.2	238	Cgt/Tgt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119941	70119942	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0032824-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	161	304	1	ENST00000245479.2:c.944dup	p.Tyr315Ter	p.Y315*	ENST00000245479	NM_000346.3	315	tac/tAac																																																																														
MSH2	4436	MSKCC	GRCh37	2	47707946	47707946	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032824-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	149	415	0	ENST00000233146.2:c.2570T>C	p.Ile857Thr	p.I857T	ENST00000233146	NM_000251.2	857	aTt/aCt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209101885	209101885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032824-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	113	346	0	ENST00000345146.2:c.1163G>A	p.Arg388His	p.R388H	ENST00000345146	NM_005896.2	388	cGt/cAt																																																																														
KDR	3791	MSKCC	GRCh37	4	55991418	55991418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032824-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	178	602	4	ENST00000263923.4:c.43G>A	p.Val15Met	p.V15M	ENST00000263923	NM_002253.2	15	Gtg/Atg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411622	63411622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032824-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			574	404	710	2	ENST00000330258.3:c.1545del	p.Glu516ArgfsTer25	p.E516Rfs*25	ENST00000330258	NM_152424.3	515	ctT/ct																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56486824	56486824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	77	511	0	ENST00000267101.3:c.1238C>T	p.Ser413Phe	p.S413F	ENST00000267101	NM_001982.3	413	tCc/tTc																																																																														
SETD8	387893	MSKCC	GRCh37	12	123889485	123889485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	51	226	0	ENST00000330479.4:c.712C>T	p.Arg238Trp	p.R238W	ENST00000330479	NM_020382.3	238	Cgg/Tgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2211753	2211753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	165	671	0	ENST00000398665.3:c.1469C>T	p.Ser490Phe	p.S490F	ENST00000398665	NM_032482.2	490	tCc/tTc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15354040	15354040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	94	343	0	ENST00000263377.2:c.2840C>T	p.Ser947Phe	p.S947F	ENST00000263377	NM_058243.2	947	tCc/tTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867256	45867256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	128	521	1	ENST00000391945.4:c.937G>A	p.Glu313Lys	p.E313K	ENST00000391945	NM_000400.3	313	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	102	223	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	150	338	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38133183	38133183	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	143	560	0	ENST00000317025.8:c.4290T>G	p.Asp1430Glu	p.D1430E	ENST00000317025	NM_023034.1	1430	gaT/gaG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	45	191	0				ENST00000310581	NM_198253.2																																																																																
PIK3R2	5296	MSKCC	GRCh37	19	18266717	18266717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	48	441	0	ENST00000222254.8:c.28C>G	p.Arg10Gly	p.R10G	ENST00000222254	NM_005027.3	10	Cgc/Ggc																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170510	11170510	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	119	600	0	ENST00000344626.4:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000344626	NM_003072.3	1573	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	61	341	0				ENST00000310581	NM_198253.2																																																																																
EPAS1	2034	MSKCC	GRCh37	2	46607367	46607367	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	40	696	2	ENST00000263734.3:c.1556C>T	p.Thr519Met	p.T519M	ENST00000263734	NM_001430.4	519	aCg/aTg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21557703	21557703	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	70	889	1	ENST00000382592.4:c.2142G>C	p.Lys714Asn	p.K714N	ENST00000382592	NM_014572.2	714	aaG/aaC																																																																														
TEK	7010	MSKCC	GRCh37	9	27157924	27157924	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	228	657	3	ENST00000380036.4:c.148C>G	p.Arg50Gly	p.R50G	ENST00000380036	NM_000459.3	50	Cgc/Ggc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106733	27106734	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	160	582	0	ENST00000324856.7:c.6347_6348del	p.Arg2116ThrfsTer33	p.R2116Tfs*33	ENST00000324856	NM_006015.4	2115	cAG/c																																																																														
JAK1	3716	MSKCC	GRCh37	1	65303646	65303647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	40	608	0	ENST00000342505.4:c.3108dup	p.Val1037ArgfsTer4	p.V1037Rfs*4	ENST00000342505	NM_002227.2	1036	-/C																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	42	403	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
RET	5979	MSKCC	GRCh37	10	43622119	43622119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	156	475	0	ENST00000355710.3:c.3136G>A	p.Ala1046Thr	p.A1046T	ENST00000355710	NM_020975.4	1046	Gcc/Acc																																																																														
RET	5979	MSKCC	GRCh37	10	43623593	43623593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	142	454	0	ENST00000355710.3:c.3221C>A	p.Pro1074His	p.P1074H	ENST00000355710	NM_020975.4	1074	cCt/cAt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88649922	88649922	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	141	531	1	ENST00000372037.3:c.176del	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	57	ccT/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717712	89717712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	147	440	1	ENST00000371953.3:c.737C>T	p.Pro246Leu	p.P246L	ENST00000371953	NM_000314.4	246	cCg/cTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720733	89720734	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	20	148	0	ENST00000371953.3:c.885_886del	p.Cys296Ter	p.C296*	ENST00000371953	NM_000314.4	295	cTA/c																																																																														
PTEN	5728	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	50	240	1	ENST00000371953.3:c.1027-1G>T		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
RRAS2	22800	MSKCC	GRCh37	11	14316389	14316389	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	145	540	0	ENST00000256196.4:c.216A>T	p.Gln72His	p.Q72H	ENST00000256196		72	caA/caT																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71947024	71947024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	64	766	0	ENST00000298229.2:c.2877del	p.Arg960GlyfsTer2	p.R960Gfs*2	ENST00000298229	NM_001567.3	958	aCc/ac																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	207	714	7	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	246	663	5	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49448188	49448188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	82	516	0	ENST00000301067.7:c.412G>A	p.Ala138Thr	p.A138T	ENST00000301067	NM_003482.3	138	Gct/Act																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	274	761	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	508	785	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112154	115112154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	84	635	0	ENST00000257566.3:c.1586del	p.Gly529AlafsTer103	p.G529Afs*103	ENST00000257566	NM_016569.3	529	gGc/gc																																																																														
FLT3	2322	MSKCC	GRCh37	13	28626685	28626686	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	33	434	0	ENST00000241453.7:c.610dup	p.Glu204GlyfsTer4	p.E204Gfs*4	ENST00000241453	NM_004119.2	204	gaa/gGaa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	39	470	2	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41240184	41240184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	28	28	0	ENST00000379561.5:c.166G>A	p.Ala56Thr	p.A56T	ENST00000379561	NM_002015.3	56	Gcg/Acg																																																																														
BLM	641	MSKCC	GRCh37	15	91303500	91303500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	99	387	0	ENST00000355112.3:c.1211G>A	p.Arg404Gln	p.R404Q	ENST00000355112	NM_000057.2	404	cGg/cAg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778349	3778349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	170	613	0	ENST00000262367.5:c.6699G>T	p.Gln2233His	p.Q2233H	ENST00000262367	NM_004380.2	2233	caG/caT																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	128	469	4	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	108	366	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663406	67663406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	109	309	0	ENST00000264010.4:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000264010	NM_006565.3	603	Cgc/Tgc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	143	386	4	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827753	72827753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	184	569	0	ENST00000268489.5:c.8828G>A	p.Arg2943Gln	p.R2943Q	ENST00000268489	NM_006885.3	2943	cGg/cAg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350876	89350876	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149939914		P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	305	920	3	ENST00000301030.4:c.2074G>A	p.Asp692Asn	p.D692N	ENST00000301030	NM_001256183.1	692	Gac/Aac																																																																														
NF1	4763	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	188	591	4	ENST00000358273.4:c.2033delC	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																																																														
NF1	4763	MSKCC	GRCh37	17	29661945	29661945	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	123	592	0	ENST00000358273.4:c.5902C>T	p.Arg1968Ter	p.R1968*	ENST00000358273	NM_001042492.2	1968	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	360	661	14	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733094	74733094	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	63	522	0	ENST00000359995.5:c.149A>G	p.Tyr50Cys	p.Y50C	ENST00000359995	NM_001195427.1	50	tAc/tGc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10262425	10262425	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	182	522	0	ENST00000340748.4:c.2069+1G>A		p.X690_splice	ENST00000340748		690																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11121203	11121203	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	197	526	0	ENST00000344626.4:c.2270A>G	p.Tyr757Cys	p.Y757C	ENST00000344626	NM_003072.3	757	tAc/tGc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276861	15276861	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	225	680	0	ENST00000263388.2:c.5404delG	p.Ala1802LeufsTer23	p.A1802Lfs*23	ENST00000263388	NM_000435.2	1802	Gct/ct																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353843	15353843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	206	504	0	ENST00000263377.2:c.3037C>T	p.Pro1013Ser	p.P1013S	ENST00000263377	NM_058243.2	1013	Cca/Tca																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279905	18279905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	212	557	0	ENST00000222254.8:c.1988G>A	p.Gly663Asp	p.G663D	ENST00000222254	NM_005027.3	663	gGc/gAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	238	723	5	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	262	821	3	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905174	50905175	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	120	741	0	ENST00000440232.2:c.461dup	p.Gly155TrpfsTer9	p.G155Wfs*9	ENST00000440232	NM_002691.3	152	-/C																																																																														
TMEM127	55654	MSKCC	GRCh37	2	96930905	96930905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	190	614	0	ENST00000258439.3:c.215T>C	p.Leu72Ser	p.L72S	ENST00000258439	NM_001193304.2	72	tTg/tCg																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178129268	178129268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	91	317	0	ENST00000397062.3:c.37T>C	p.Ser13Pro	p.S13P	ENST00000397062	NM_006164.4	13	Tcc/Ccc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212615424	212615424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	44	415	0	ENST00000342788.4:c.562C>T	p.Arg188Cys	p.R188C	ENST00000342788	NM_005235.2	188	Cgt/Tgt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225370686	225370686	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	97	387	3	ENST00000264414.4:c.1193del	p.Lys398ArgfsTer6	p.K398Rfs*6	ENST00000264414	NM_003590.4	398	aAg/ag																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750659	39750661	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	116	341	0	ENST00000361337.2:c.2065_2067del	p.Lys689del	p.K689del	ENST00000361337	NM_003286.2	687	AAG/-																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	250	430	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
ERG	2078	MSKCC	GRCh37	21	39764347	39764347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	198	498	0	ENST00000288319.7:c.765del	p.Arg256GlyfsTer35	p.R256Gfs*35	ENST00000288319	NM_182918.3	255	ccC/cc																																																																														
RAF1	5894	MSKCC	GRCh37	3	12633229	12633229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	173	531	1	ENST00000251849.4:c.1171A>G	p.Arg391Gly	p.R391G	ENST00000251849	NM_002880.3	391	Agg/Ggg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52643905	52643905	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	140	594	4	ENST00000394830.3:c.1991A>G	p.Glu664Gly	p.E664G	ENST00000394830	NM_018313.4	664	gAg/gGg																																																																														
MITF	4286	MSKCC	GRCh37	3	69987136	69987136	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141679911		P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	84	439	0	ENST00000352241.4:c.518C>T	p.Pro173Leu	p.P173L	ENST00000352241	NM_198159.2	173	cCg/cTg																																																																														
ATR	545	MSKCC	GRCh37	3	142281525	142281525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	152	623	0	ENST00000350721.4:c.719G>A	p.Gly240Asp	p.G240D	ENST00000350721	NM_001184.3	240	gGt/gAt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143114337	143114337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	30	422	0	ENST00000262992.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000262992	NM_001101669.1	362	Gat/Aat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	209	526	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187560905	187560905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	133	426	0	ENST00000441802.2:c.3613C>T	p.Arg1205Ter	p.R1205*	ENST00000441802	NM_005245.3	1205	Cga/Tga																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950138	38950138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	148	555	0	ENST00000357387.3:c.3812C>T	p.Thr1271Met	p.T1271M	ENST00000357387	NM_152756.3	1271	aCg/aTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	23	220	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589619	67589620	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	37	243	0	ENST00000274335.5:c.1384_1385delGA	p.Glu462IlefsTer2	p.E462Ifs*2	ENST00000274335		461	cGA/c																																																																														
RASA1	5921	MSKCC	GRCh37	5	86645099	86645099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	74	352	1	ENST00000274376.6:c.1171C>T	p.Arg391Trp	p.R391W	ENST00000274376	NM_002890.2	391	Cgg/Tgg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86672329	86672329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	103	367	0	ENST00000274376.6:c.2131C>G	p.Arg711Gly	p.R711G	ENST00000274376	NM_002890.2	711	Cga/Gga																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402539	20402539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	27	399	2	ENST00000346618.3:c.76G>A	p.Ala26Thr	p.A26T	ENST00000346618	NM_001949.4	26	Gcc/Acc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911051	29911051	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	69	663	0	ENST00000376809.5:c.350A>G	p.His117Arg	p.H117R	ENST00000376809	NM_002116.7	117	cAc/cGc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166784	32166784	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	104	707	1	ENST00000375023.3:c.4454del	p.Pro1485LeufsTer20	p.P1485Lfs*20	ENST00000375023	NM_004557.3	1485	cCt/ct																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552792	106552792	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	173	545	0	ENST00000369096.4:c.757A>C	p.Ile253Leu	p.I253L	ENST00000369096	NM_001198.3	253	Atc/Ctc																																																																														
LATS1	9113	MSKCC	GRCh37	6	149982872	149982872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	93	418	0	ENST00000253339.5:c.3386A>G	p.Tyr1129Cys	p.Y1129C	ENST00000253339		1129	tAt/tGt																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152345769	152345769	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	23	339	0	ENST00000359321.1:c.801del	p.Lys267AsnfsTer30	p.K267Nfs*30	ENST00000359321	NM_005431.1	267	aaA/aa																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006078	22006078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	204	553	0	ENST00000276925.6:c.325C>T	p.Arg109Cys	p.R109C	ENST00000276925	NM_004936.3	109	Cgc/Tgc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87636210	87636210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	39	487	0	ENST00000277120.3:c.2375G>A	p.Arg792His	p.R792H	ENST00000277120		792	cGc/cAc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222246	53222246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	129	786	4	ENST00000375401.3:c.4586C>T	p.Ala1529Val	p.A1529V	ENST00000375401	NM_004187.3	1529	gCg/gTg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246362	53246362	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	127	720	0	ENST00000375401.3:c.620A>G	p.Asn207Ser	p.N207S	ENST00000375401	NM_004187.3	207	aAc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	75	422	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0033030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	77	513	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
POLE	5426	MSKCC	GRCh37	12	133250243	133250244	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0033030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	63	482	0	ENST00000320574.5:c.1276dup	p.Ala426GlyfsTer10	p.A426Gfs*10	ENST00000320574	NM_006231.2	426	gcg/gGcg																																																																														
APC	324	MSKCC	GRCh37	5	112175738	112175738	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	90	269	0	ENST00000257430.4:c.4448del	p.Pro1483GlnfsTer24	p.P1483Qfs*24	ENST00000257430	NM_000038.5	1483	Cca/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	129	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39620648	39620648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	46	507	0	ENST00000262039.4:c.2046G>A	p.Met682Ile	p.M682I	ENST00000262039	NM_002647.2	682	atG/atA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	58	442	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	114	373	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	53	227	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112178561	112178607	+	frameshift_variant	Frame_Shift_Del	DEL	TCAAGTGGAAGTGAATCTGATAGATCAGAAAGACCTGTATTAGTACG	TCAAGTGGAAGTGAATCTGATAGATCAGAAAGACCTGTATTAGTACG	-			P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	29	320	0	ENST00000257430.4:c.7270_7316del	p.Ser2424ProfsTer24	p.S2424Pfs*24	ENST00000257430	NM_000038.5	2424	TCAAGTGGAAGTGAATCTGATAGATCAGAAAGACCTGTATTAGTACGc/c																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001529	150001529	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	97	619	0	ENST00000253339.5:c.2075A>G	p.Tyr692Cys	p.Y692C	ENST00000253339		692	tAc/tGc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	51	358	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47061249	47061249	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0033068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	69	535	0	ENST00000409792.3:c.7431+1G>T		p.X2477_splice	ENST00000409792	NM_014159.6	2477																																																																															
INSR	3643	MSKCC	GRCh37	19	7170632	7170632	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0033068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	51	702	0	ENST00000302850.5:c.1399del	p.His467ThrfsTer20	p.H467Tfs*20	ENST00000302850	NM_000208.2	467	Cac/ac																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55129917	55129917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	87	589	0	ENST00000257290.5:c.451C>T	p.Arg151Cys	p.R151C	ENST00000257290	NM_006206.4	151	Cgc/Tgc																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505513	25505513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	52	673	1	ENST00000264709.3:c.245C>T	p.Ser82Leu	p.S82L	ENST00000264709	NM_175629.2	82	tCa/tTa																																																																														
MET	4233	MSKCC	GRCh37	7	116411927	116411976	+	frameshift_variant	Frame_Shift_Del	DEL	ACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGA	ACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGA	-			P-0033072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	160	847	0	ENST00000397752.3:c.2913_2962del	p.Tyr971Ter	p.Y971*	ENST00000397752	NM_000245.2	971	tACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGA/t																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0033078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	370	517	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0033078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	283	822	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
MSH3	4437	MSKCC	GRCh37	5	79950697	79950705	+	inframe_deletion	In_Frame_Del	DEL	GCTGCAGCG	GCTGCAGCG	-			P-0033078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	27	218	1	ENST00000265081.6:c.162_170delTGCAGCGGC	p.Ala60_Ala62del	p.A60_A62del	ENST00000265081	NM_002439.4	51	GCTGCAGCG/-																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14024607	14024607	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	164	622	0	ENST00000311895.7:c.833G>C	p.Gly278Ala	p.G278A	ENST00000311895	NM_005236.2	278	gGa/gCa																																																																														
CDH1	999	MSKCC	GRCh37	16	68847366	68847366	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	253	684	1	ENST00000261769.5:c.1288G>T	p.Val430Leu	p.V430L	ENST00000261769	NM_004360.3	430	Gtg/Ttg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89842153	89842153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0033078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	227	611	0	ENST00000389301.3:c.1897G>T	p.Glu633Ter	p.E633*	ENST00000389301	NM_000135.2	633	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	118	671	0	ENST00000269305.4:c.581T>C	p.Leu194Pro	p.L194P	ENST00000269305	NM_001126112.2	194	cTt/cCt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	50	476	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																														
MPL	4352	MSKCC	GRCh37	1	43805762	43805762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	66	720	0	ENST00000372470.3:c.818C>G	p.Ser273Cys	p.S273C	ENST00000372470	NM_005373.2	273	tCc/tGc																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120464953	120464953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	103	592	0	ENST00000256646.2:c.5119G>T	p.Gly1707Cys	p.G1707C	ENST00000256646	NM_024408.3	1707	Ggc/Tgc																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149433730	149433730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	64	808	0	ENST00000286301.3:c.2821G>A	p.Glu941Lys	p.E941K	ENST00000286301	NM_005211.3	941	Gag/Aag																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127915901	127915901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	139	683	0	ENST00000373547.4:c.580C>A	p.Leu194Met	p.L194M	ENST00000373547	NM_002721.4	194	Ctg/Atg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123176493	123176493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	25	181	0	ENST00000218089.9:c.460G>A	p.Glu154Lys	p.E154K	ENST00000218089	NM_001042749.1	154	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579386	7579386	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0033084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	636	659	0	ENST00000269305.4:c.301A>T	p.Lys101Ter	p.K101*	ENST00000269305	NM_001126112.2	101	Aaa/Taa																																																																														
RAD50	10111	MSKCC	GRCh37	5	131926976	131926976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	144	258	0	ENST00000265335.6:c.1513A>G	p.Ile505Val	p.I505V	ENST00000265335		505	Ata/Gta																																																																														
ETV6	2120	MSKCC	GRCh37	12	12038879	12038879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0033084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	179	308	0	ENST00000396373.4:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000396373	NM_001987.4	391	tAt/tGt																																																																														
STAT3	6774	MSKCC	GRCh37	17	40491411	40491411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	377	582	0	ENST00000264657.5:c.389A>G	p.Asn130Ser	p.N130S	ENST00000264657	NM_139276.2	130	aAc/aGc																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99170750	99170751	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0033084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	114	438	0	ENST00000074304.5:c.1381dup	p.Val461GlyfsTer20	p.V461Gfs*20	ENST00000074304	NM_001134224.1	460	acg/acGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0033093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	544	494	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	114	756	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	47	480	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39595510	39595510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	18	370	0	ENST00000262039.4:c.1396C>T	p.Pro466Ser	p.P466S	ENST00000262039	NM_002647.2	466	Cca/Tca																																																																														
RB1	5925	MSKCC	GRCh37	13	48942662	48942662	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0033093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	41	355	2	ENST00000267163.4:c.1050-1G>T		p.X350_splice	ENST00000267163	NM_000321.2	350																																																																															
SDHA	6389	MSKCC	GRCh37	5	236684	236684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	44	362	0	ENST00000264932.6:c.1402G>A	p.Ala468Thr	p.A468T	ENST00000264932	NM_004168.2	468	Gcc/Acc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	254	368	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	100	175	0				ENST00000310581	NM_198253.2																																																																																
FGFR2	2263	MSKCC	GRCh37	10	123310859	123310859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	87	569	0	ENST00000358487.5:c.569G>A	p.Arg190Gln	p.R190Q	ENST00000358487	NM_000141.4	190	cGg/cAg																																																																														
AXL	558	MSKCC	GRCh37	19	41758775	41758775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	243	679	0	ENST00000301178.4:c.1829G>A	p.Arg610Gln	p.R610Q	ENST00000301178	NM_021913.4	610	cGa/cAa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443870	52443870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	213	472	0	ENST00000460680.1:c.25G>A	p.Glu9Lys	p.E9K	ENST00000460680	NM_004656.3	9	Gag/Aag																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248600	8248600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	279	553	0	ENST00000335790.3:c.287C>T	p.Pro96Leu	p.P96L	ENST00000335790	NM_002315.2	96	cCa/cTa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18650682	18650682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	75	325	0	ENST00000266497.5:c.2893G>A	p.Gly965Arg	p.G965R	ENST00000266497		965	Gga/Aga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445496	49445496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	265	614	2	ENST00000301067.7:c.1970C>T	p.Pro657Leu	p.P657L	ENST00000301067	NM_003482.3	657	cCt/cTt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50909745	50909745	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	317	612	1	ENST00000440232.2:c.1465G>C	p.Val489Leu	p.V489L	ENST00000440232	NM_002691.3	489	Gtg/Ctg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730840	40730840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	135	591	1	ENST00000373198.4:c.3695C>T	p.Pro1232Leu	p.P1232L	ENST00000373198	NM_133170.3	1232	cCt/cTt																																																																														
TP63	8626	MSKCC	GRCh37	3	189604206	189604206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	113	553	1	ENST00000264731.3:c.1373C>T	p.Ser458Leu	p.S458L	ENST00000264731	NM_003722.4	458	tCa/tTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201678	66201678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	205	466	0	ENST00000273854.3:c.2824C>A	p.Leu942Met	p.L942M	ENST00000273854	NM_004439.5	942	Ctg/Atg																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31464404	31464404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	340	758	3	ENST00000344624.3:c.2513T>A	p.Val838Glu	p.V838E	ENST00000344624		838	gTa/gAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696739	176696740	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	213	434	0	ENST00000439151.2:c.5440_5441delinsTT	p.Pro1814Phe	p.P1814F	ENST00000439151	NM_022455.4	1814	CCt/TTt																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170095	32170095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1262	296	645	0	ENST00000375023.3:c.3513G>T	p.Gln1171His	p.Q1171H	ENST00000375023	NM_004557.3	1171	caG/caT																																																																														
CARD11	84433	MSKCC	GRCh37	7	2977642	2977642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	445	643	0	ENST00000396946.4:c.1042G>A	p.Glu348Lys	p.E348K	ENST00000396946	NM_032415.4	348	Gag/Aag																																																																														
TSC1	7248	MSKCC	GRCh37	9	135778087	135778087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0033097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	231	653	1	ENST00000298552.3:c.2296G>A	p.Glu766Lys	p.E766K	ENST00000298552	NM_001162426.1	766	Gag/Aag																																																																														
BAP1	8314	MSKCC	GRCh37	3	52441430	52441430	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	143	541	0	ENST00000460680.1:c.422A>G	p.His141Arg	p.H141R	ENST00000460680	NM_004656.3	141	cAt/cGt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279634	123279645	+	inframe_deletion	In_Frame_Del	DEL	GGCATTTGCCGG	GGCATTTGCCGG	-			P-0033098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	180	504	0	ENST00000358487.5:c.787_798del	p.Pro263_Ala266del	p.P263_A266del	ENST00000358487	NM_000141.4	263	CCGGCAAATGCC/-																																																																														
POLE	5426	MSKCC	GRCh37	12	133233984	133233984	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0033098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	145	595	0	ENST00000320574.5:c.3410T>A	p.Leu1137Gln	p.L1137Q	ENST00000320574	NM_006231.2	1137	cTg/cAg																																																																														
BARD1	580	MSKCC	GRCh37	2	215646120	215646120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0033098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	238	557	0	ENST00000260947.4:c.478A>G	p.Lys160Glu	p.K160E	ENST00000260947	NM_000465.2	160	Aaa/Gaa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52613136	52613137	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0033098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	161	508	0	ENST00000394830.3:c.3391_3392del	p.Met1131ValfsTer24	p.M1131Vfs*24	ENST00000394830	NM_018313.4	1131	ATg/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0033102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	47	602	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	57	690	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0033102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	32	638	1	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770576	40770576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	45	591	2	ENST00000373198.4:c.2806C>T	p.Arg936Ter	p.R936*	ENST00000373198	NM_133170.3	936	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0033126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	205	422	0	ENST00000269305.4:c.783-2A>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
MGA	23269	MSKCC	GRCh37	15	42042193	42042193	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0033126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	85	482	1	ENST00000219905.7:c.6390del	p.Pro2131GlnfsTer48	p.P2131Qfs*48	ENST00000219905	NM_001164273.1	2130	Ttt/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	61	404	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	66	736	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246390	53246390	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	88	757	0	ENST00000375401.3:c.592C>T	p.Arg198Ter	p.R198*	ENST00000375401	NM_004187.3	198	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439925	56439925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	80	512	1	ENST00000407977.2:c.667C>T	p.Arg223Cys	p.R223C	ENST00000407977		223	Cgc/Tgc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46254641	46254641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	51	543	0	ENST00000334344.6:c.4831C>T	p.Gln1611Ter	p.Q1611*	ENST00000334344	NM_152641.2	1611	Cag/Tag																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622362	1622362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	47	653	2	ENST00000344749.5:c.602C>T	p.Pro201Leu	p.P201L	ENST00000344749	NM_001136139.2	201	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175483	112175483	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0033127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	32	442	1	ENST00000257430.4:c.4192del	p.Ser1398ValfsTer17	p.S1398Vfs*17	ENST00000257430	NM_000038.5	1398	Agt/gt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	150	539	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	245	797	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	205	667	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	157	556	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	212	597	1	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	224	458	0	ENST00000371953.3:c.801+1G>T		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
NFE2L2	4780	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	268	878	0	ENST00000397062.3:c.246A>T	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaT																																																																														
RB1	5925	MSKCC	GRCh37	13	48941696	48941696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	135	625	0	ENST00000267163.4:c.1010del	p.Leu337TrpfsTer12	p.L337Wfs*12	ENST00000267163	NM_000321.2	336	Ttt/tt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	252	733	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	427	818	13	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	311	621	20	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	142	684	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	142	556	8	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
ATRX	546	MSKCC	GRCh37	X	76938230	76938230	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	45	872	11	ENST00000373344.5:c.2518delA	p.Arg840GlufsTer29	p.R840Efs*29	ENST00000373344	NM_000489.3	840	Aga/ga																																																																														
APC	324	MSKCC	GRCh37	5	112175101	112175101	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	111	345	0	ENST00000257430.4:c.3814del	p.Ser1272GlnfsTer16	p.S1272Qfs*16	ENST00000257430	NM_000038.5	1270	tgT/tg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931468	131931468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	156	581	1	ENST00000265335.6:c.2173C>T	p.Arg725Trp	p.R725W	ENST00000265335		725	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435777	56435777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1055597951		P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	176	638	1	ENST00000407977.2:c.1360C>T	p.Arg454Cys	p.R454C	ENST00000407977		454	Cgc/Tgc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45395664	45395664	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	189	732	3	ENST00000262160.6:c.470del	p.Lys157ArgfsTer6	p.K157Rfs*6	ENST00000262160	NM_005901.5	157	aAg/ag																																																																														
APC	324	MSKCC	GRCh37	5	112177265	112177265	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	118	507	2	ENST00000257430.4:c.5978del	p.Pro1993LeufsTer51	p.P1993Lfs*51	ENST00000257430	NM_000038.5	1992	Ccc/cc																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88681327	88681327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	108	383	2	ENST00000372037.3:c.1217G>A	p.Arg406His	p.R406H	ENST00000372037	NM_004329.2	406	cGc/cAc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	223	809	10	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041262	29041262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	151	573	0	ENST00000282397.4:c.166delG	p.Glu56LysfsTer12	p.E56Kfs*12	ENST00000282397	NM_002019.4	56	Gaa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927430	178927430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	171	723	0	ENST00000263967.3:c.1193G>A	p.Arg398His	p.R398H	ENST00000263967	NM_006218.2	398	cGt/cAt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	118	1008	0	ENST00000293328.3:c.1101_1102dup	p.Gln368ProfsTer3	p.Q368Pfs*3	ENST00000293328	NM_012448.3	368	cag/cCCag																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94180486	94180486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	150	729	0	ENST00000323929.3:c.1682G>A	p.Ser561Asn	p.S561N	ENST00000323929	NM_005591.3	561	aGc/aAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424495	49424496	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	438	793	0	ENST00000301067.7:c.13727_13728del	p.Phe4576CysfsTer29	p.F4576Cfs*29	ENST00000301067	NM_003482.3	4576	tTT/t																																																																														
FLT3	2322	MSKCC	GRCh37	13	28626686	28626686	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	177	668	2	ENST00000241453.7:c.610del	p.Glu204LysfsTer26	p.E204Kfs*26	ENST00000241453	NM_004119.2	204	Gaa/aa																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423552	88423552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	246	953	0	ENST00000360948.2:c.2283G>T	p.Trp761Cys	p.W761C	ENST00000360948	NM_001012338.2	761	tgG/tgT																																																																														
IDH2	3418	MSKCC	GRCh37	15	90628102	90628102	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	292	898	0	ENST00000330062.3:c.1217T>C	p.Val406Ala	p.V406A	ENST00000330062	NM_002168.2	406	gTg/gCg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3781402	3781402	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	239	859	0	ENST00000262367.5:c.4963del	p.Leu1655CysfsTer89	p.L1655Cfs*89	ENST00000262367	NM_004380.2	1655	Ctg/tg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347798	89347800	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	216	764	0	ENST00000301030.4:c.5150_5152del	p.Glu1717del	p.E1717del	ENST00000301030	NM_001256183.1	1717	gAGGtg/gtg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40379600	40379600	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	250	1027	2	ENST00000293328.3:c.232del	p.Glu78LysfsTer6	p.E78Kfs*6	ENST00000293328	NM_012448.3	78	Gaa/aa																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45394825	45394825	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	116	419	0	ENST00000262160.6:c.524del	p.Leu175CysfsTer5	p.L175Cfs*5	ENST00000262160	NM_005901.5	175	tTg/tg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11095961	11095961	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	263	836	0	ENST00000344626.4:c.235A>G	p.Met79Val	p.M79V	ENST00000344626	NM_003072.3	79	Atg/Gtg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953334	17953334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	286	854	1	ENST00000458235.1:c.652C>T	p.Arg218Cys	p.R218C	ENST00000458235	NM_000215.3	218	Cgc/Tgc																																																																														
CIC	23152	MSKCC	GRCh37	19	42797254	42797254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	256	784	0	ENST00000575354.2:c.3616C>A	p.Gln1206Lys	p.Q1206K	ENST00000575354	NM_015125.3	1206	Cag/Aag																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99180099	99180099	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	170	590	0	ENST00000074304.5:c.2042C>T	p.Thr681Met	p.T681M	ENST00000074304	NM_001134224.1	681	aCg/aTg																																																																														
PMS1	5378	MSKCC	GRCh37	2	190682809	190682810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1275949235		P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	134	607	0	ENST00000441310.2:c.492dup	p.Cys165MetfsTer2	p.C165Mfs*2	ENST00000441310	NM_000534.4	162	gca/gcAa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719328	190719328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	121	542	0	ENST00000441310.2:c.1330G>A	p.Val444Ile	p.V444I	ENST00000441310	NM_000534.4	444	Gta/Ata																																																																														
SETD2	29072	MSKCC	GRCh37	3	47143009	47143010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	214	794	0	ENST00000409792.3:c.4952_4953dup	p.Thr1652LeufsTer12	p.T1652Lfs*12	ENST00000409792	NM_014159.6	1651	-/TT																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1805423	1805423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	201	667	1	ENST00000260795.2:c.935C>T	p.Ala312Val	p.A312V	ENST00000260795		312	gCg/gTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591130	67591134	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAC	AAGAC	-			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	100	476	0	ENST00000274335.5:c.1723_1727del	p.Lys575GlufsTer25	p.K575Efs*25	ENST00000274335		575	AAGACg/g																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205604	38205604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	310	1032	4	ENST00000317025.8:c.86G>A	p.Arg29His	p.R29H	ENST00000317025	NM_023034.1	29	cGt/cAt																																																																														
AGO2	27161	MSKCC	GRCh37	8	141559231	141559231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	259	715	0	ENST00000220592.5:c.1570G>A	p.Gly524Ser	p.G524S	ENST00000220592	NM_012154.3	524	Ggc/Agc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141595398	141595398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	199	763	0	ENST00000220592.5:c.35C>A	p.Pro12His	p.P12H	ENST00000220592	NM_012154.3	12	cCt/cAt																																																																														
AR	367	MSKCC	GRCh37	X	66905959	66905959	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	162	753	0	ENST00000374690.3:c.1876A>G	p.Thr626Ala	p.T626A	ENST00000374690	NM_000044.3	626	Act/Gct																																																																														
TP53	7157	MSKCC	GRCh37	17	7576888	7576888	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0032646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	109	820	0	ENST00000269305.4:c.958A>T	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	320	Aag/Tag																																																																														
MGA	23269	MSKCC	GRCh37	15	42034782	42034782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	79	533	0	ENST00000219905.7:c.4624G>A	p.Val1542Met	p.V1542M	ENST00000219905	NM_001164273.1	1542	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	104	219	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	352	434	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14038659	14038659	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs2020955		P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	100	292	0	ENST00000311895.7:c.1984T>C	p.Ser662Pro	p.S662P	ENST00000311895	NM_005236.2	662	Tct/Cct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188836	32188836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	479	685	1	ENST00000375023.3:c.718C>T	p.Pro240Ser	p.P240S	ENST00000375023	NM_004557.3	240	Cct/Tct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306677	41306677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	252	735	1	ENST00000373198.4:c.982C>T	p.Arg328Cys	p.R328C	ENST00000373198	NM_133170.3	328	Cgc/Tgc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857656	9857656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	160	429	0	ENST00000330684.3:c.3745G>A	p.Asp1249Asn	p.D1249N	ENST00000330684	NM_001134407.1	1249	Gat/Aat																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265323	152265323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	108	344	0	ENST00000206249.3:c.776G>A	p.Arg259Gln	p.R259Q	ENST00000206249	NM_000125.3	259	cGa/cAa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9560970	9560970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	157	519	0	ENST00000353224.5:c.812C>T	p.Ser271Leu	p.S271L	ENST00000353224	NM_177990.2	271	tCg/tTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212537975	212537975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	123	351	1	ENST00000342788.4:c.1630C>T	p.Arg544Trp	p.R544W	ENST00000342788	NM_005235.2	544	Cgg/Tgg																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804343	46804343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	117	579	0	ENST00000290295.7:c.664C>T	p.Pro222Ser	p.P222S	ENST00000290295	NM_006361.5	222	Ccg/Tcg																																																																														
WT1	7490	MSKCC	GRCh37	11	32439124	32439124	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	222	596	0	ENST00000332351.3:c.949G>A	p.Gly317Arg	p.G317R	ENST00000332351	NM_024426.4	317	Gga/Aga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087521	27087521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	317	761	0	ENST00000324856.7:c.2095C>T	p.Pro699Ser	p.P699S	ENST00000324856	NM_006015.4	699	Cct/Tct																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675103	40675103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	299	820	0	ENST00000249776.8:c.67G>A	p.Asp23Asn	p.D23N	ENST00000249776	NM_033286.3	23	Gat/Aat																																																																														
KDR	3791	MSKCC	GRCh37	4	55961097	55961097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	240	679	1	ENST00000263923.4:c.2843G>A	p.Gly948Glu	p.G948E	ENST00000263923	NM_002253.2	948	gGg/gAg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18544088	18544088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	61	352	0	ENST00000266497.5:c.1905G>A	p.Met635Ile	p.M635I	ENST00000266497		635	atG/atA																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467841	50467841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	134	378	0	ENST00000331340.3:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000331340	NM_006060.4	359	cCg/cTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29670153	29670153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	145	404	0	ENST00000358273.4:c.7189G>A	p.Gly2397Arg	p.G2397R	ENST00000358273	NM_001042492.2	2397	Ggg/Agg																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156843731	156843731	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	399	969	0	ENST00000524377.1:c.1157A>G	p.Asn386Ser	p.N386S	ENST00000524377	NM_002529.3	386	aAc/aGc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16001803	16001803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	123	545	0	ENST00000268712.3:c.2698C>T	p.Pro900Ser	p.P900S	ENST00000268712	NM_006311.3	900	Cct/Tct																																																																														
SESN2	83667	MSKCC	GRCh37	1	28586380	28586380	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	136	373	0	ENST00000253063.3:c.22T>A	p.Cys8Ser	p.C8S	ENST00000253063	NM_031459.4	8	Tgc/Agc																																																																														
MPL	4352	MSKCC	GRCh37	1	43805786	43805786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	220	655	0	ENST00000372470.3:c.842C>T	p.Pro281Leu	p.P281L	ENST00000372470	NM_005373.2	281	cCt/cTt																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733388	85733388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	197	482	0	ENST00000370580.1:c.624G>T	p.Gln208His	p.Q208H	ENST00000370580	NM_003921.4	208	caG/caT																																																																														
RET	5979	MSKCC	GRCh37	10	43615018	43615018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	201	663	0	ENST00000355710.3:c.2432C>T	p.Ser811Phe	p.S811F	ENST00000355710	NM_020975.4	811	tCc/tTc																																																																														
LMO1	4004	MSKCC	GRCh37	11	8248559	8248559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	252	727	0	ENST00000335790.3:c.328C>T	p.His110Tyr	p.H110Y	ENST00000335790	NM_002315.2	110	Cac/Tac																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343064	118343064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	104	303	0	ENST00000534358.1:c.1190G>A	p.Arg397Lys	p.R397K	ENST00000534358	NM_005933.3	397	aGa/aAa																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134438	41134438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	229	567	0	ENST00000379561.5:c.1190C>T	p.Thr397Ile	p.T397I	ENST00000379561	NM_002015.3	397	aCc/aTc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134966	41134966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	171	308	0	ENST00000379561.5:c.662G>A	p.Ser221Asn	p.S221N	ENST00000379561	NM_002015.3	221	aGc/aAc																																																																														
B2M	567	MSKCC	GRCh37	15	45008523	45008532	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAGATCGAG	ATAGATCGAG	-			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	108	346	0	ENST00000558401.1:c.347-3_353del		p.X116_splice	ENST00000558401	NM_004048.2	116																																																																															
BLM	641	MSKCC	GRCh37	15	91310253	91310254	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	73	287	0	ENST00000355112.3:c.2307_2307+1delinsAA		p.X769_splice	ENST00000355112	NM_000057.2	769																																																																															
IGF1R	3480	MSKCC	GRCh37	15	99467879	99467879	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	104	337	0	ENST00000268035.6:c.2748G>A	p.Trp916Ter	p.W916*	ENST00000268035	NM_000875.3	916	tgG/tgA																																																																														
SLX4	84464	MSKCC	GRCh37	16	3632540	3632541	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	285	873	1	ENST00000294008.3:c.5307_5308delinsAA	p.Val1770Met	p.V1770M	ENST00000294008	NM_032444.2	1769	aaGGtg/aaAAtg																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81965230	81965230	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	183	549	0	ENST00000359376.3:c.2710C>T	p.Arg904Ter	p.R904*	ENST00000359376	NM_002661.3	904	Cga/Tga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15971331	15971331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	135	572	0	ENST00000268712.3:c.4618C>T	p.Pro1540Ser	p.P1540S	ENST00000268712	NM_006311.3	1540	Cct/Tct																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16056710	16056710	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	137	337	0	ENST00000268712.3:c.733-1G>A		p.X245_splice	ENST00000268712	NM_006311.3	245																																																																															
NF1	4763	MSKCC	GRCh37	17	29585505	29585506	+	missense_variant	Missense_Mutation	DNP	GA	GA	AC			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	37	237	1	ENST00000358273.4:c.4317_4318delinsAC	p.Lys1440Gln	p.K1440Q	ENST00000358273	NM_001042492.2	1439	ttGAag/ttACag																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30293206	30293206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	183	477	0	ENST00000322652.5:c.496C>T	p.His166Tyr	p.H166Y	ENST00000322652	NM_015355.2	166	Cac/Tac																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276263	15276263	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	209	657	0	ENST00000263388.2:c.5731A>C	p.Ile1911Leu	p.I1911L	ENST00000263388	NM_000435.2	1911	Atc/Ctc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945692	17945692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	251	744	0	ENST00000458235.1:c.2168C>T	p.Thr723Ile	p.T723I	ENST00000458235	NM_000215.3	723	aCc/aTc																																																																														
SOS1	6654	MSKCC	GRCh37	2	39241910	39241910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	144	311	0	ENST00000402219.2:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000402219	NM_005633.3	646	Gaa/Aaa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251826	212251826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	119	352	0	ENST00000342788.4:c.3233C>A	p.Ser1078Tyr	p.S1078Y	ENST00000342788	NM_005235.2	1078	tCt/tAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980722	40980723	+	splice_donor_variant	Splice_Site	DNP	AC	AC	GT			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	95	361	1	ENST00000373198.4:c.1762+1_1762+2inv		p.X588_splice	ENST00000373198	NM_133170.3	588																																																																															
ERG	2078	MSKCC	GRCh37	21	39755737	39755737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	114	561	0	ENST00000288319.7:c.1028A>G	p.Asp343Gly	p.D343G	ENST00000288319	NM_182918.3	343	gAt/gGt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12475594	12475594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	208	435	0	ENST00000287820.6:c.1468G>A	p.Asp490Asn	p.D490N	ENST00000287820	NM_015869.4	490	Gac/Aac																																																																														
MST1R	4486	MSKCC	GRCh37	3	49935009	49935009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	304	721	0	ENST00000296474.3:c.1990C>T	p.Pro664Ser	p.P664S	ENST00000296474	NM_002447.2	664	Ccg/Tcg																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71037196	71037196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	172	481	0	ENST00000318789.4:c.1095G>A	p.Met365Ile	p.M365I	ENST00000318789	NM_032682.5	365	atG/atA																																																																														
RYBP	23429	MSKCC	GRCh37	3	72428522	72428522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	246	510	0	ENST00000477973.2:c.480C>T	p.Thr161Ile	p.T161I	ENST00000477973	NM_012234.5	161	aCc/aTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259321	89259321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	193	506	0	ENST00000336596.2:c.465G>A	p.Met155Ile	p.M155I	ENST00000336596	NM_005233.5	155	atG/atA																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169993023	169993023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	157	347	1	ENST00000295797.4:c.653C>T	p.Pro218Leu	p.P218L	ENST00000295797	NM_002740.5	218	cCa/cTa																																																																														
TET2	54790	MSKCC	GRCh37	4	106155695	106155696	+	missense_variant	Missense_Mutation	DNP	TA	TA	AT			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	120	381	0	ENST00000380013.4:c.596_597delinsAT	p.Leu199Tyr	p.L199Y	ENST00000380013	NM_001127208.2	199	tTA/tAT																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628389	86628389	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	164	367	0	ENST00000274376.6:c.758T>G	p.Ile253Arg	p.I253R	ENST00000274376	NM_002890.2	253	aTa/aGa																																																																														
APC	324	MSKCC	GRCh37	5	112179638	112179638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	111	284	0	ENST00000257430.4:c.8347C>T	p.Pro2783Ser	p.P2783S	ENST00000257430	NM_000038.5	2783	Cct/Tct																																																																														
RAD50	10111	MSKCC	GRCh37	5	131925489	131925489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	158	308	0	ENST00000265335.6:c.1412C>T	p.Ser471Leu	p.S471L	ENST00000265335		471	tCa/tTa																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968285	2968286	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	297	812	1	ENST00000396946.4:c.1700_1701delinsTT	p.Pro567Leu	p.P567L	ENST00000396946	NM_032415.4	567	cCC/cTT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55268908	55268908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	253	803	0	ENST00000275493.2:c.2974C>T	p.Pro992Ser	p.P992S	ENST00000275493	NM_005228.3	992	Cct/Tct																																																																														
LYN	4067	MSKCC	GRCh37	8	56860194	56860194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	184	559	0	ENST00000519728.1:c.196G>C	p.Asp66His	p.D66H	ENST00000519728	NM_002350.3	66	Gac/Cac																																																																														
PREX2	80243	MSKCC	GRCh37	8	68981343	68981343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	139	391	0	ENST00000288368.4:c.1415G>A	p.Arg472Lys	p.R472K	ENST00000288368	NM_024870.2	472	aGa/aAa																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995538	68995538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	227	698	0	ENST00000288368.4:c.1942C>T	p.Pro648Ser	p.P648S	ENST00000288368	NM_024870.2	648	Cct/Tct																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933497	39933497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	264	343	0	ENST00000378444.4:c.1102C>T	p.Pro368Ser	p.P368S	ENST00000378444	NM_001123385.1	368	Cct/Tct																																																																														
BTK	695	MSKCC	GRCh37	X	100611080	100611080	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	256	408	0	ENST00000308731.7:c.1526T>G	p.Met509Arg	p.M509R	ENST00000308731	NM_000061.2	509	aTg/aGg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0032651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	100	535	1	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94211984	94211984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	90	597	0	ENST00000323929.3:c.461G>T	p.Gly154Val	p.G154V	ENST00000323929	NM_005591.3	154	gGa/gTa																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968199	134968199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	128	641	0	ENST00000398015.3:c.2712C>A	p.Asp904Glu	p.D904E	ENST00000398015	NM_004441.4	904	gaC/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0032681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	53	708	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254684	16254684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	79	487	0	ENST00000375759.3:c.1949A>G	p.Tyr650Cys	p.Y650C	ENST00000375759	NM_015001.2	650	tAt/tGt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86674234	86674234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	31	310	0	ENST00000274376.6:c.2366G>C	p.Arg789Pro	p.R789P	ENST00000274376	NM_002890.2	789	cGa/cCa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637711	52637711	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	127	552	1	ENST00000394830.3:c.2605C>T	p.Gln869Ter	p.Q869*	ENST00000394830	NM_018313.4	869	Cag/Tag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93969194	93969194	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	82	377	0	ENST00000369303.4:c.1802A>C	p.Lys601Thr	p.K601T	ENST00000369303	NM_004440.3	601	aAa/aCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579360	7579361	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	140	611	1	ENST00000269305.4:c.326dup	p.Arg110ProfsTer39	p.R110Pfs*39	ENST00000269305	NM_001126112.2	109	ttc/ttTc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111129	193111129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	71	280	0	ENST00000367435.3:c.662C>A	p.Thr221Asn	p.T221N	ENST00000367435	NM_024529.4	221	aCc/aAc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636818	8636818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	95	450	0	ENST00000356435.5:c.91G>T	p.Val31Phe	p.V31F	ENST00000356435		31	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	116	905	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
MST1R	4486	MSKCC	GRCh37	3	49924914	49924914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	57	845	0	ENST00000296474.3:c.4029G>C	p.Gln1343His	p.Q1343H	ENST00000296474	NM_002447.2	1343	caG/caC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928097	178928097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	212	695	0	ENST00000263967.3:c.1375A>G	p.Ile459Val	p.I459V	ENST00000263967	NM_006218.2	459	Att/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0032717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	853	633	4	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0032717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	86	306	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426771	49426772	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0032717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	249	372	2	ENST00000301067.7:c.11714_11716dup	p.Gln3905dup	p.Q3905dup	ENST00000301067	NM_003482.3	3905	ctg/cAGCtg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	17	268	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396235	396235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	93	509	0	ENST00000262320.3:c.791C>T	p.Pro264Leu	p.P264L	ENST00000262320	NM_003502.3	264	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	39	256	0				ENST00000310581	NM_198253.2																																																																																
RB1	5925	MSKCC	GRCh37	13	48878185	48878186	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0032739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	21	80	0	ENST00000267163.4:c.137_137+1delinsAA		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																															
CDK12	51755	MSKCC	GRCh37	17	37650875	37650875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	62	407	0	ENST00000447079.4:c.2347C>T	p.His783Tyr	p.H783Y	ENST00000447079	NM_015083.1	783	Cac/Tac																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246668	41246668	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	69	471	0	ENST00000357654.3:c.880A>G	p.Lys294Glu	p.K294E	ENST00000357654	NM_007294.3	294	Aaa/Gaa																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965359	25965359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	116	463	0	ENST00000435504.4:c.3847C>T	p.Arg1283Cys	p.R1283C	ENST00000435504		1283	Cgt/Tgt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40710607	40710607	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	102	467	0	ENST00000373198.4:c.4244A>T	p.Glu1415Val	p.E1415V	ENST00000373198	NM_133170.3	1415	gAg/gTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40980724	40980724	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	56	271	0	ENST00000373198.4:c.1762G>A	p.Ala588Thr	p.A588T	ENST00000373198	NM_133170.3	588	Gct/Act																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56177950	56177950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	72	413	1	ENST00000399503.3:c.2923C>T	p.His975Tyr	p.H975Y	ENST00000399503	NM_005921.1	975	Cat/Tat																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526717	106526717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	26	347	0	ENST00000359195.3:c.3010C>T	p.Pro1004Ser	p.P1004S	ENST00000359195	NM_002649.2	1004	Cca/Tca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98224197	98224198	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	56	343	1	ENST00000331920.6:c.2643_2644delinsTT	p.Leu882Phe	p.L882F	ENST00000331920	NM_000264.3	881	gtCCtt/gtTTtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	187	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0032744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	75	463	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	220	244	0				ENST00000310581	NM_198253.2																																																																																
PPP2R1A	5518	MSKCC	GRCh37	19	52714670	52714670	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112759633		P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	220	523	0	ENST00000322088.6:c.428C>T	p.Ser143Phe	p.S143F	ENST00000322088	NM_014225.5	143	tCc/tTc																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	129	347	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	206	339	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248766	212248766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	104	298	0	ENST00000342788.4:c.3501G>T	p.Glu1167Asp	p.E1167D	ENST00000342788	NM_005235.2	1167	gaG/gaT																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259079	89259079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	114	267	0	ENST00000336596.2:c.223G>A	p.Asp75Asn	p.D75N	ENST00000336596	NM_005233.5	75	Gac/Aac																																																																														
WT1	7490	MSKCC	GRCh37	11	32410618	32410618	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	187	422	0	ENST00000332351.3:c.1540C>T	p.Gln514Ter	p.Q514*	ENST00000332351	NM_024426.4	514	Cag/Tag																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123256192	123256192	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	156	379	0	ENST00000358487.5:c.1717C>T	p.Arg573Ter	p.R573*	ENST00000358487	NM_000141.4	573	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410327	63410327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	394	662	1	ENST00000330258.3:c.2840C>T	p.Ser947Phe	p.S947F	ENST00000330258	NM_152424.3	947	tCc/tTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133253990	133253990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	170	494	1	ENST00000320574.5:c.760C>T	p.Pro254Ser	p.P254S	ENST00000320574	NM_006231.2	254	Ccg/Tcg																																																																														
CYSLTR2	57105	MSKCC	GRCh37	13	49281708	49281708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	343	681	0	ENST00000282018.3:c.755C>T	p.Thr252Ile	p.T252I	ENST00000282018	NM_020377.2	252	aCc/aTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16068385	16068385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	13	47	0	ENST00000268712.3:c.526C>T	p.Leu176Phe	p.L176F	ENST00000268712	NM_006311.3	176	Ctc/Ttc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272228	15272228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	102	459	0	ENST00000263388.2:c.6211G>A	p.Gly2071Arg	p.G2071R	ENST00000263388	NM_000435.2	2071	Ggg/Agg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170032	32170032	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	224	612	0	ENST00000375023.3:c.3576T>G	p.Ser1192Arg	p.S1192R	ENST00000375023	NM_004557.3	1192	agT/agG																																																																														
ROS1	6098	MSKCC	GRCh37	6	117639403	117639403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	223	387	0	ENST00000368508.3:c.5953G>A	p.Gly1985Ser	p.G1985S	ENST00000368508	NM_002944.2	1985	Ggt/Agt																																																																														
PARK2	5071	MSKCC	GRCh37	6	162622234	162622234	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	369	393	0	ENST00000366898.1:c.463C>T	p.Gln155Ter	p.Q155*	ENST00000366898	NM_004562.2	155	Caa/Taa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141582990	141582990	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	234	531	0	ENST00000220592.5:c.257T>G	p.Ile86Ser	p.I86S	ENST00000220592	NM_012154.3	86	aTc/aGc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135779195	135779195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	140	377	0	ENST00000298552.3:c.2051C>T	p.Pro684Leu	p.P684L	ENST00000298552	NM_001162426.1	684	cCt/cTt																																																																														
ATRX	546	MSKCC	GRCh37	X	76888835	76888835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	139	561	1	ENST00000373344.5:c.4994G>A	p.Arg1665Lys	p.R1665K	ENST00000373344	NM_000489.3	1665	aGa/aAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673712	176673717	+	stop_gained	Nonsense_Mutation	ONP	GAAAAC	GAAAAC	AAAATT			P-0032746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	96	274	1	ENST00000439151.2:c.4412_4417delinsAAAATT	p.Arg1471_Arg1473delinsGlnAsnTer	p.R1471_R1473delinsQN*	ENST00000439151	NM_022455.4	1471	cGAAAACga/cAAAATTga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	2472	462	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0032822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	56	343	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	492	645	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044898	47044898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	409	398	0	ENST00000329236.7:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000329236	NM_001204466.1	664	Cag/Tag																																																																														
DDR2	4921	MSKCC	GRCh37	1	162748421	162748421	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	75	436	0	ENST00000367921.3:c.2335G>T	p.Glu779Ter	p.E779*	ENST00000367921	NM_006182.2	779	Gag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153271269	153271269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	26	209	0	ENST00000281708.4:c.509G>A	p.Arg170Lys	p.R170K	ENST00000281708	NM_033632.3	170	aGa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	268	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	358	637	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	345	612	1	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																														
MDM2	4193	MSKCC	GRCh37	12	69207357	69207357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	252	460	0	ENST00000462284.1:c.123G>T	p.Leu41Phe	p.L41F	ENST00000462284	NM_002392.5	41	ttG/ttT																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774157	56774158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	369	526	2	ENST00000337432.4:c.509dup	p.Asp171ArgfsTer32	p.D171Rfs*32	ENST00000337432	NM_058216.2	170	gta/gTta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	311	570	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
NF1	4763	MSKCC	GRCh37	17	29560085	29560085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	124	251	0	ENST00000358273.4:c.3562C>T	p.Gln1188Ter	p.Q1188*	ENST00000358273	NM_001042492.2	1188	Caa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15952272	15952272	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	52	450	0	ENST00000268712.3:c.6423C>G	p.His2141Gln	p.H2141Q	ENST00000268712	NM_006311.3	2141	caC/caG																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3790400	3790400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	372	262	0	ENST00000262367.5:c.4133G>C	p.Arg1378Pro	p.R1378P	ENST00000262367	NM_004380.2	1378	cGg/cCg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046509	69046509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	191	410	0	ENST00000288368.4:c.3982T>G	p.Leu1328Val	p.L1328V	ENST00000288368	NM_024870.2	1328	Ttg/Gtg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49427730	49427732	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	282	541	0	ENST00000301067.7:c.10756_10758del	p.Lys3586del	p.K3586del	ENST00000301067	NM_003482.3	3586	AAG/-																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30107906	30107906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	189	329	0	ENST00000331968.5:c.901T>C	p.Cys301Arg	p.C301R	ENST00000331968	NM_002742.2	301	Tgc/Cgc																																																																														
CUL3	8452	MSKCC	GRCh37	2	225422504	225422504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	55	455	0	ENST00000264414.4:c.136C>T	p.Arg46Cys	p.R46C	ENST00000264414	NM_003590.4	46	Cgt/Tgt																																																																														
FOXL2	668	MSKCC	GRCh37	3	138665549	138665549	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	136	188	0	ENST00000330315.3:c.16C>A	p.Pro6Thr	p.P6T	ENST00000330315	NM_023067.3	6	Ccc/Acc																																																																														
BCL6	604	MSKCC	GRCh37	3	187444666	187444666	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	178	309	0	ENST00000232014.4:c.1561A>C	p.Asn521His	p.N521H	ENST00000232014	NM_001130845.1	521	Aat/Cat																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55139829	55139829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	51	306	0	ENST00000257290.5:c.1490T>C	p.Ile497Thr	p.I497T	ENST00000257290	NM_006206.4	497	aTc/aCc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	105	248	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0032896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	577	496	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	184	385	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862944	9862944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	324	335	0	ENST00000330684.3:c.2359G>A	p.Glu787Lys	p.E787K	ENST00000330684	NM_001134407.1	787	Gag/Aag																																																																														
TEK	7010	MSKCC	GRCh37	9	27157993	27157993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	409	395	0	ENST00000380036.4:c.217G>A	p.Glu73Lys	p.E73K	ENST00000380036	NM_000459.3	73	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	261	170	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41267306	41267306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	109	267	1	ENST00000349496.5:c.890C>T	p.Thr297Met	p.T297M	ENST00000349496	NM_001904.3	297	aCg/aTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8449728	8449728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	365	361	0	ENST00000356435.5:c.3985C>T	p.Pro1329Ser	p.P1329S	ENST00000356435		1329	Ccg/Tcg																																																																														
AR	367	MSKCC	GRCh37	X	66942672	66942672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	260	134	0	ENST00000374690.3:c.2453C>T	p.Pro818Leu	p.P818L	ENST00000374690	NM_000044.3	818	cCa/cTa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	85	306	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	497	513	1	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	168	274	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	111	250	1	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143003202	143003202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	162	406	0	ENST00000262992.4:c.2624C>T	p.Ala875Val	p.A875V	ENST00000262992	NM_001101669.1	875	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7573998	7573999	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	473	557	4	ENST00000269305.4:c.1028_1029delAG	p.Glu343AlafsTer3	p.E343Afs*3	ENST00000269305	NM_001126112.2	343	gAG/g																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9862737	9862737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	85	368	0	ENST00000330684.3:c.2566C>T	p.Arg856Trp	p.R856W	ENST00000330684	NM_001134407.1	856	Cgg/Tgg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260775	16260775	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	265	430	1	ENST00000375759.3:c.8040A>T	p.Lys2680Asn	p.K2680N	ENST00000375759	NM_015001.2	2680	aaA/aaT																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023213	27023222	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGGCCCTA	GCGGGCCCTA	-			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	57	61	0	ENST00000324856.7:c.320_329del	p.Ala107GlyfsTer4	p.A107Gfs*4	ENST00000324856	NM_006015.4	107	GCGGGCCCTAgg/gg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119751	70119752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	375	449	2	ENST00000245479.2:c.754_755dup	p.Lys253Ter	p.K253*	ENST00000245479	NM_000346.3	251	-/CT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591946	48591946	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	237	352	0	ENST00000342988.3:c.1109T>G	p.Val370Gly	p.V370G	ENST00000342988	NM_005359.5	370	gTc/gGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	381	543	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																														
WT1	7490	MSKCC	GRCh37	11	32417935	32417935	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	292	358	0	ENST00000332351.3:c.1117G>T	p.Gly373Ter	p.G373*	ENST00000332351	NM_024426.4	373	Gga/Tga																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267710	198267710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	145	330	0	ENST00000335508.6:c.1769G>T	p.Arg590Ile	p.R590I	ENST00000335508	NM_012433.2	590	aGa/aTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3786784	3786784	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	320	427	0	ENST00000262367.5:c.4427C>G	p.Pro1476Arg	p.P1476R	ENST00000262367	NM_004380.2	1476	cCa/cGa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371577	225371577	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0032965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	107	390	0	ENST00000264414.4:c.1027C>T	p.Gln343Ter	p.Q343*	ENST00000264414	NM_003590.4	343	Cag/Tag																																																																														
CDK8	1024	MSKCC	GRCh37	13	26975648	26975649	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	136	299	1	ENST00000381527.3:c.1156_1157delinsAA	p.Gly386Asn	p.G386N	ENST00000381527	NM_001260.1	386	GGc/AAc																																																																														
PARK2	5071	MSKCC	GRCh37	6	162683757	162683757	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	289	434	0	ENST00000366898.1:c.212A>T	p.Gln71Leu	p.Q71L	ENST00000366898	NM_004562.2	71	cAg/cTg																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981440	70981440	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	510	677	0	ENST00000276594.2:c.656T>C	p.Leu219Pro	p.L219P	ENST00000276594	NM_024504.3	219	cTg/cCg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	132	546	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	121	516	0	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176524541	176524541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	58	720	0	ENST00000292408.4:c.2273G>A	p.Arg758His	p.R758H	ENST00000292408	NM_213647.1	758	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121912654		P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	140	691	0	ENST00000269305.4:c.469G>A	p.Val157Ile	p.V157I	ENST00000269305	NM_001126112.2	157	Gtc/Atc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328332	137328332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	121	533	1	ENST00000481739.1:c.1261C>T	p.Arg421Cys	p.R421C	ENST00000481739	NM_002957.4	421	Cgc/Tgc																																																																														
RAD21	5885	MSKCC	GRCh37	8	117859878	117859878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	29	237	0	ENST00000297338.2:c.1757G>A	p.Arg586Gln	p.R586Q	ENST00000297338	NM_006265.2	586	cGa/cAa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112990	2112990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	50	522	0	ENST00000219476.3:c.1379C>T	p.Ala460Val	p.A460V	ENST00000219476	NM_000548.3	460	gCc/gTc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944567	71944567	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	124	511	0	ENST00000298229.2:c.2122+1G>A		p.X708_splice	ENST00000298229	NM_001567.3	708																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402031	402031	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	78	463	0	ENST00000399788.2:c.4760del	p.Lys1587ArgfsTer37	p.K1587Rfs*37	ENST00000399788	NM_001042603.1	1587	aAg/ag																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563060	21563060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	55	674	1	ENST00000382592.4:c.859G>A	p.Ala287Thr	p.A287T	ENST00000382592	NM_014572.2	287	Gcc/Acc																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893590	28893590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	60	363	1	ENST00000282397.4:c.3256G>A	p.Gly1086Arg	p.G1086R	ENST00000282397	NM_002019.4	1086	Gga/Aga																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988389	36988390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	72	244	0	ENST00000354822.5:c.263dup	p.His90AlafsTer349	p.H90Afs*349	ENST00000354822	NM_001079668.2	88	gtg/gtTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712797	43712797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	152	683	0	ENST00000382044.4:c.4387C>T	p.Arg1463Cys	p.R1463C	ENST00000382044	NM_001141980.1	1463	Cgt/Tgt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2106685	2106685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	143	648	3	ENST00000219476.3:c.689G>A	p.Cys230Tyr	p.C230Y	ENST00000219476	NM_000548.3	230	tGc/tAc																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134712	2134712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	41	548	0	ENST00000219476.3:c.4489C>T	p.Pro1497Ser	p.P1497S	ENST00000219476	NM_000548.3	1497	Ccc/Tcc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37649018	37649018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	21	285	0	ENST00000447079.4:c.2123G>A	p.Arg708His	p.R708H	ENST00000447079	NM_015083.1	708	cGt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36222826	36222826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	84	726	0	ENST00000222270.7:c.5455G>A	p.Asp1819Asn	p.D1819N	ENST00000222270	NM_014727.1	1819	Gac/Aac																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139022	50139022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	96	718	2	ENST00000246792.3:c.541G>A	p.Glu181Lys	p.E181K	ENST00000246792	NM_006270.3	181	Gag/Aag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703574	47703574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	138	592	0	ENST00000233146.2:c.2074G>A	p.Gly692Arg	p.G692R	ENST00000233146	NM_000251.2	692	Ggg/Agg																																																																														
KDR	3791	MSKCC	GRCh37	4	55962446	55962446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	33	486	0	ENST00000263923.4:c.2678G>A	p.Gly893Asp	p.G893D	ENST00000263923	NM_002253.2	893	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112173527	112173527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	23	289	0	ENST00000257430.4:c.2236G>A	p.Gly746Ser	p.G746S	ENST00000257430	NM_000038.5	746	Ggc/Agc																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032023	26032023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	64	248	0	ENST00000244661.2:c.266C>T	p.Ala89Val	p.A89V	ENST00000244661	NM_003537.3	89	gCg/gTg																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29911261	29911261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3129018		P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	14	211	0	ENST00000376809.5:c.560C>T	p.Thr187Met	p.T187M	ENST00000376809	NM_002116.7	187	aCg/aTg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288833	33288833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	78	356	0	ENST00000374542.5:c.719G>A	p.Cys240Tyr	p.C240Y	ENST00000374542	NM_001141970.1	240	tGt/tAt																																																																														
ABL1	25	MSKCC	GRCh37	9	133759937	133759937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	35	601	0	ENST00000318560.5:c.2260G>A	p.Gly754Arg	p.G754R	ENST00000318560	NM_005157.4	754	Ggg/Agg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223602	53223602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	18	244	0	ENST00000375401.3:c.3757C>T	p.Pro1253Ser	p.P1253S	ENST00000375401	NM_004187.3	1253	Ccg/Tcg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	171	440	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	237	587	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175876	112175876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	41	207	0	ENST00000257430.4:c.4585C>T	p.Gln1529Ter	p.Q1529*	ENST00000257430	NM_000038.5	1529	Cag/Tag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56489571	56489571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	279	395	0	ENST00000267101.3:c.2036G>A	p.Arg679Gln	p.R679Q	ENST00000267101	NM_001982.3	679	cGa/cAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8471048	8471048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	86	385	0	ENST00000356435.5:c.3451C>T	p.Arg1151Cys	p.R1151C	ENST00000356435		1151	Cgc/Tgc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403604	138403604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	105	551	0	ENST00000289153.2:c.2178C>G	p.Ile726Met	p.I726M	ENST00000289153	NM_006219.2	726	atC/atG																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112352	115112352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	325	240	0	ENST00000257566.3:c.1388C>T	p.Ala463Val	p.A463V	ENST00000257566	NM_016569.3	463	gCg/gTg																																																																														
CD276	80381	MSKCC	GRCh37	15	73996078	73996078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	245	728	0	ENST00000318443.5:c.812C>T	p.Ser271Phe	p.S271F	ENST00000318443	NM_001024736.1	271	tCc/tTc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347459	89347459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	168	494	0	ENST00000301030.4:c.5491G>C	p.Asp1831His	p.D1831H	ENST00000301030	NM_001256183.1	1831	Gac/Cac																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10283780	10283780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	189	671	1	ENST00000340748.4:c.706G>A	p.Glu236Lys	p.E236K	ENST00000340748		236	Gaa/Aaa																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10283819	10283819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	183	600	0	ENST00000340748.4:c.667G>A	p.Glu223Lys	p.E223K	ENST00000340748		223	Gaa/Aaa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138403515	138403515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	140	551	0	ENST00000289153.2:c.2267C>T	p.Ser756Phe	p.S756F	ENST00000289153	NM_006219.2	756	tCt/tTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831378	72831378	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	140	364	0	ENST00000268489.5:c.5203C>T	p.Gln1735Ter	p.Q1735*	ENST00000268489	NM_006885.3	1735	Caa/Taa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0033004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	250	699	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	449	403	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72241932	72241932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1362	798	985	1	ENST00000357731.5:c.458G>A	p.Gly153Glu	p.G153E	ENST00000357731	NM_173808.2	153	gGa/gAa																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166113	118166113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	483	460	0	ENST00000369448.3:c.623C>T	p.Pro208Leu	p.P208L	ENST00000369448	NM_017709.3	208	cCc/cTc																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138073	64138073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	380	458	0	ENST00000334205.4:c.1996G>A	p.Glu666Lys	p.E666K	ENST00000334205	NM_003942.2	666	Gag/Aag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627688	37627688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	757	705	0	ENST00000447079.4:c.1603C>T	p.Pro535Ser	p.P535S	ENST00000447079	NM_015083.1	535	Ccc/Tcc																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39575945	39575945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	237	287	0	ENST00000262039.4:c.878G>A	p.Arg293Lys	p.R293K	ENST00000262039	NM_002647.2	293	aGa/aAa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15374260	15374260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	583	529	2	ENST00000263377.2:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000263377	NM_058243.2	438	Gag/Aag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248403	212248403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	411	382	0	ENST00000342788.4:c.3864C>G	p.Phe1288Leu	p.F1288L	ENST00000342788	NM_005235.2	1288	ttC/ttG																																																																														
KDR	3791	MSKCC	GRCh37	4	55953900	55953901	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0017541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	307	312	0	ENST00000263923.4:c.3535_3536delinsTT	p.Pro1179Leu	p.P1179L	ENST00000263923	NM_002253.2	1179	CCg/TTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411137	63411137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	700	311	0	ENST00000330258.3:c.2030C>T	p.Ser677Phe	p.S677F	ENST00000330258	NM_152424.3	677	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	219	585	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	222	579	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	215	557	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52692244	52692244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	181	448	0	ENST00000394830.3:c.616G>A	p.Glu206Lys	p.E206K	ENST00000394830	NM_018313.4	206	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21970893	21970905	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCCTCACCTGAG	GTCCTCACCTGAG	-			P-0023571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	262	719	0	ENST00000304494.5:c.453_457+8del		p.X151_splice	ENST00000304494	NM_000077.4	151																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970893	21970905	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCCTCACCTGAG	GTCCTCACCTGAG	-			P-0023571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	262	719	0	ENST00000304494.5:c.453_457+8del		p.X151_splice	ENST00000304494	NM_000077.4	151																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21970893	21970905	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCCTCACCTGAG	GTCCTCACCTGAG	-			P-0023571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	262	719	0	ENST00000304494.5:c.453_457+8del		p.X151_splice	ENST00000304494	NM_000077.4	151																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	58	697	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0023646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	39	863	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40872305	40872305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	39	969	0	ENST00000428826.2:c.650G>A	p.Arg217Gln	p.R217Q	ENST00000428826		217	cGa/cAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028711-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			756	25	459	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0028711-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			455	52	357	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577049	7577049	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028711-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			723	109	588	0	ENST00000269305.4:c.889delC	p.His297ThrfsTer48	p.H297Tfs*48	ENST00000269305	NM_001126112.2	297	Cac/ac																																																																														
BRAF	673	MSKCC	GRCh37	7	140477858	140477858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028711-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			657	67	455	0	ENST00000288602.6:c.1450A>G	p.Met484Val	p.M484V	ENST00000288602	NM_004333.4	484	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031020-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	66	308	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
JUN	3725	MSKCC	GRCh37	1	59248525	59248525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031020-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	42	259	0	ENST00000371222.2:c.218C>T	p.Ser73Leu	p.S73L	ENST00000371222	NM_002228.3	73	tCg/tTg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28626752	28626752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031020-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	38	306	0	ENST00000241453.7:c.544C>G	p.Leu182Val	p.L182V	ENST00000241453	NM_004119.2	182	Ctg/Gtg																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149374844	149374844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031020-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	21	132	0	ENST00000360632.3:c.250C>T	p.His84Tyr	p.H84Y	ENST00000360632	NM_015472.4	84	Cat/Tat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884476	151884476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031020-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	42	219	1	ENST00000262189.6:c.4879G>A	p.Asp1627Asn	p.D1627N	ENST00000262189	NM_170606.2	1627	Gac/Aac																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	149	631	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	180	573	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																														
TP63	8626	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	197	467	1	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
CBL	867	MSKCC	GRCh37	11	119149242	119149242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	220	489	0	ENST00000264033.4:c.1250C>T	p.Pro417Leu	p.P417L	ENST00000264033	NM_005188.3	417	cCt/cTt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68981315	68981315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	101	272	0	ENST00000288368.4:c.1387C>T	p.Arg463Cys	p.R463C	ENST00000288368	NM_024870.2	463	Cgc/Tgc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68995569	68995569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	184	583	0	ENST00000288368.4:c.1973C>T	p.Ser658Leu	p.S658L	ENST00000288368	NM_024870.2	658	tCg/tTg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32180931	32180931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	71	457	0	ENST00000375023.3:c.2419C>T	p.Arg807Cys	p.R807C	ENST00000375023	NM_004557.3	807	Cgc/Tgc																																																																														
VHL	7428	MSKCC	GRCh37	3	10183713	10183713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	163	496	0	ENST00000256474.2:c.182C>T	p.Pro61Leu	p.P61L	ENST00000256474	NM_000551.3	61	cCc/cTc																																																																														
BRCA1	672	MSKCC	GRCh37	17	41223166	41223166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	50	453	0	ENST00000357654.3:c.4765C>T	p.Arg1589Cys	p.R1589C	ENST00000357654	NM_007294.3	1589	Cgt/Tgt																																																																														
ROS1	6098	MSKCC	GRCh37	6	117684026	117684026	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	89	324	0	ENST00000368508.3:c.3121C>T	p.Pro1041Ser	p.P1041S	ENST00000368508	NM_002944.2	1041	Cca/Tca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	51	266	1				ENST00000310581	NM_198253.2																																																																																
ELF3	1999	MSKCC	GRCh37	1	201981275	201981276	+	missense_variant	Missense_Mutation	DNP	GG	GG	CA			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	186	645	1	ENST00000359651.3:c.354_355delinsCA	p.Asp119Asn	p.D119N	ENST00000359651		118	ggGGac/ggCAac																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88683399	88683399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	107	425	0	ENST00000372037.3:c.1522C>T	p.Pro508Ser	p.P508S	ENST00000372037	NM_004329.2	508	Cca/Tca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118365100	118365100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	135	412	0	ENST00000534358.1:c.5276C>T	p.Ser1759Phe	p.S1759F	ENST00000534358	NM_005933.3	1759	tCc/tTc																																																																														
CD79B	974	MSKCC	GRCh37	17	62006654	62006654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	244	564	0	ENST00000392795.3:c.625G>A	p.Glu209Lys	p.E209K	ENST00000392795	NM_001039933.1	209	Gag/Aag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533688	63533688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	167	430	1	ENST00000307078.5:c.1466C>T	p.Pro489Leu	p.P489L	ENST00000307078	NM_004655.3	489	cCc/cTc																																																																														
REL	5966	MSKCC	GRCh37	2	61148975	61148975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	120	315	0	ENST00000295025.8:c.1165C>T	p.Pro389Ser	p.P389S	ENST00000295025	NM_002908.2	389	Ccc/Tcc																																																																														
PAK7	57144	MSKCC	GRCh37	20	9543557	9543557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	144	403	1	ENST00000353224.5:c.1597G>A	p.Asp533Asn	p.D533N	ENST00000353224	NM_177990.2	533	Gac/Aac																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31024291	31024291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201338763		P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	179	426	0	ENST00000375687.4:c.3776C>T	p.Pro1259Leu	p.P1259L	ENST00000375687	NM_015338.5	1259	cCa/cTa																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651281	52651282	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	152	397	0	ENST00000394830.3:c.1814_1815delinsTT	p.Ser605Phe	p.S605F	ENST00000394830	NM_018313.4	605	tCC/tTT																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402728	20402728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	55	292	0	ENST00000346618.3:c.265C>T	p.Pro89Ser	p.P89S	ENST00000346618	NM_001949.4	89	Ccc/Tcc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138196942	138196942	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	97	271	0	ENST00000237289.4:c.604A>G	p.Ile202Val	p.I202V	ENST00000237289	NM_001270507.1	202	Atc/Gtc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2963948	2963948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	190	560	0	ENST00000396946.4:c.1859C>T	p.Ser620Phe	p.S620F	ENST00000396946	NM_032415.4	620	tCc/tTc																																																																														
LYN	4067	MSKCC	GRCh37	8	56912099	56912099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	71	588	0	ENST00000519728.1:c.1327C>T	p.Pro443Ser	p.P443S	ENST00000519728	NM_002350.3	443	Ccc/Tcc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249438	110249438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	387	802	0	ENST00000374672.4:c.1135C>T	p.Pro379Ser	p.P379S	ENST00000374672	NM_004235.4	379	Ccc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	80	226	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	181	634	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
MPL	4352	MSKCC	GRCh37	1	43814548	43814548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	102	346	0	ENST00000372470.3:c.1343C>T	p.Thr448Ile	p.T448I	ENST00000372470	NM_005373.2	448	aCc/aTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	28	647	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	30	567	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057706	27057706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	68	649	0	ENST00000324856.7:c.1414A>G	p.Asn472Asp	p.N472D	ENST00000324856	NM_006015.4	472	Aac/Gac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	210	454	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88423565	88423565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	97	646	0	ENST00000360948.2:c.2270G>T	p.Gly757Val	p.G757V	ENST00000360948	NM_001012338.2	757	gGg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577526	7577526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	116	676	0	ENST00000269305.4:c.755T>C	p.Leu252Pro	p.L252P	ENST00000269305	NM_001126112.2	252	cTc/cCc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220612	1220612	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	104	601	0	ENST00000326873.7:c.630C>A	p.Cys210Ter	p.C210*	ENST00000326873	NM_000455.4	210	tgC/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	40	331	0				ENST00000310581	NM_198253.2																																																																																
IFNGR1	3459	MSKCC	GRCh37	6	137522134	137522134	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	59	188	0	ENST00000367739.4:c.745A>C	p.Ile249Leu	p.I249L	ENST00000367739	NM_000416.2	249	Att/Ctt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	216	249	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	234	660	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	301	785	1	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422137	81422137	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	88	497	0	ENST00000298171.2:c.113G>C	p.Arg38Thr	p.R38T	ENST00000298171	NM_000369.2	38	aGa/aCa																																																																														
SOS1	6654	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	95	417	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
ATM	472	MSKCC	GRCh37	11	108141824	108141824	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	220	510	0	ENST00000278616.4:c.2872G>T	p.Glu958Ter	p.E958*	ENST00000278616	NM_000051.3	958	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578453	7578504	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACA	GGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACA	-			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	214	719	1	ENST00000269305.4:c.426_477del	p.Val143TrpfsTer10	p.V143Wfs*10	ENST00000269305	NM_001126112.2	142	ccTGTGCAGCTGTGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCC/cc																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619344	1619344	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	251	701	1	ENST00000344749.5:c.1297A>T	p.Met433Leu	p.M433L	ENST00000344749	NM_001136139.2	433	Atg/Ttg																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25505424	25505425	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	84	536	2	ENST00000264709.3:c.333_334delinsTT	p.Lys111_Gly112delinsAsnCys	p.K111_G112delinsNC	ENST00000264709	NM_175629.2	111	aaGGgc/aaTTgc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607705	46607705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	162	736	0	ENST00000263734.3:c.1894G>T	p.Gly632Trp	p.G632W	ENST00000263734	NM_001430.4	632	Ggg/Tgg																																																																														
BARD1	580	MSKCC	GRCh37	2	215657030	215657030	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	60	412	0	ENST00000260947.4:c.355G>C	p.Glu119Gln	p.E119Q	ENST00000260947	NM_000465.2	119	Gag/Cag																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71026793	71026793	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	155	276	0	ENST00000318789.4:c.1428+1G>T		p.X476_splice	ENST00000318789	NM_032682.5	476																																																																															
LATS1	9113	MSKCC	GRCh37	6	150005183	150005183	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	102	556	0	ENST00000253339.5:c.1042C>T	p.Gln348Ter	p.Q348*	ENST00000253339		348	Cag/Tag																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521431	8521431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	169	689	0	ENST00000356435.5:c.807G>T	p.Trp269Cys	p.W269C	ENST00000356435		269	tgG/tgT																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128434736	128434737	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0032858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	142	672	0	ENST00000265960.3:c.117_118delinsTG	p.Glu39_Lys40delinsAspGlu	p.E39_K40delinsDE	ENST00000265960	NM_001006617.1	39	gaGAag/gaTGag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	344	207	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061317	38061317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	336	426	0	ENST00000250448.2:c.672C>A	p.Phe224Leu	p.F224L	ENST00000250448	NM_004496.3	224	ttC/ttA																																																																														
MPL	4352	MSKCC	GRCh37	1	43805149	43805149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	75	466	0	ENST00000372470.3:c.599C>T	p.Pro200Leu	p.P200L	ENST00000372470	NM_005373.2	200	cCt/cTt																																																																														
PARP1	142	MSKCC	GRCh37	1	226567721	226567721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	52	517	0	ENST00000366794.5:c.1445G>A	p.Gly482Glu	p.G482E	ENST00000366794	NM_001618.3	482	gGg/gAg																																																																														
RET	5979	MSKCC	GRCh37	10	43608331	43608331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	61	774	0	ENST00000355710.3:c.1679C>T	p.Pro560Leu	p.P560L	ENST00000355710	NM_020975.4	560	cCc/cTc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63810754	63810754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	270	352	0	ENST00000279873.7:c.841G>A	p.Ala281Thr	p.A281T	ENST00000279873	NM_032199.2	281	Gcc/Acc																																																																														
TET1	80312	MSKCC	GRCh37	10	70406146	70406146	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	36	518	0	ENST00000373644.4:c.3660G>A	p.Trp1220Ter	p.W1220*	ENST00000373644	NM_030625.2	1220	tgG/tgA																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64129442	64129442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	55	584	0	ENST00000334205.4:c.874G>A	p.Ala292Thr	p.A292T	ENST00000334205	NM_003942.2	292	Gca/Aca																																																																														
MEN1	4221	MSKCC	GRCh37	11	64574687	64574687	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	296	489	0	ENST00000337652.1:c.803T>C	p.Leu268Pro	p.L268P	ENST00000337652	NM_130803.2	268	cTg/cCg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482351	56482351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	54	500	1	ENST00000267101.3:c.899C>T	p.Ser300Phe	p.S300F	ENST00000267101	NM_001982.3	300	tCc/tTc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56490384	56490384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	49	333	0	ENST00000267101.3:c.2153G>A	p.Gly718Asp	p.G718D	ENST00000267101	NM_001982.3	718	gGt/gAt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495508	56495508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	47	496	0	ENST00000267101.3:c.3698C>T	p.Ala1233Val	p.A1233V	ENST00000267101	NM_001982.3	1233	gCc/gTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133202244	133202244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	50	573	0	ENST00000320574.5:c.6644C>T	p.Thr2215Ile	p.T2215I	ENST00000320574	NM_006231.2	2215	aCc/aTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133220027	133220027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	59	547	0	ENST00000320574.5:c.4410G>A	p.Met1470Ile	p.M1470I	ENST00000320574	NM_006231.2	1470	atG/atA																																																																														
POLE	5426	MSKCC	GRCh37	12	133256601	133256602	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	83	364	0	ENST00000320574.5:c.361_362del	p.Ser121GlnfsTer82	p.S121Qfs*82	ENST00000320574	NM_006231.2	121	TCc/c																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563153	21563153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	371	633	0	ENST00000382592.4:c.766C>T	p.Pro256Ser	p.P256S	ENST00000382592	NM_014572.2	256	Ccg/Tcg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436879	110436879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	67	537	0	ENST00000375856.3:c.1522G>A	p.Gly508Ser	p.G508S	ENST00000375856	NM_003749.2	508	Ggc/Agc																																																																														
MGA	23269	MSKCC	GRCh37	15	41988952	41988952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	29	425	0	ENST00000219905.7:c.1744G>A	p.Asp582Asn	p.D582N	ENST00000219905	NM_001164273.1	582	Gac/Aac																																																																														
TSC2	7249	MSKCC	GRCh37	16	2130373	2130373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	58	553	0	ENST00000219476.3:c.3605C>T	p.Pro1202Leu	p.P1202L	ENST00000219476	NM_000548.3	1202	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72827969	72827969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	72	736	0	ENST00000268489.5:c.8612C>T	p.Pro2871Leu	p.P2871L	ENST00000268489	NM_006885.3	2871	cCc/cTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72832355	72832355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	57	491	0	ENST00000268489.5:c.4226C>T	p.Ala1409Val	p.A1409V	ENST00000268489	NM_006885.3	1409	gCc/gTc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993300	72993300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	47	746	0	ENST00000268489.5:c.745G>A	p.Gly249Ser	p.G249S	ENST00000268489	NM_006885.3	249	Ggt/Agt																																																																														
AURKB	9212	MSKCC	GRCh37	17	8108239	8108239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	53	546	1	ENST00000585124.1:c.985G>A	p.Ala329Thr	p.A329T	ENST00000585124	NM_004217.3	329	Gcc/Acc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619277	37619277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	33	385	1	ENST00000447079.4:c.953C>T	p.Ser318Phe	p.S318F	ENST00000447079	NM_015083.1	318	tCt/tTt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37873598	37873598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	64	631	0	ENST00000269571.5:c.1763C>T	p.Ala588Val	p.A588V	ENST00000269571		588	gCc/gTc																																																																														
RARA	5914	MSKCC	GRCh37	17	38487508	38487508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	38	437	0	ENST00000254066.5:c.38G>A	p.Gly13Asp	p.G13D	ENST00000254066	NM_000964.3	13	gGc/gAc																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216629	2216629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	54	690	0	ENST00000398665.3:c.2273C>T	p.Pro758Leu	p.P758L	ENST00000398665	NM_032482.2	758	cCg/cTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7125503	7125503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	55	529	0	ENST00000302850.5:c.3049G>A	p.Glu1017Lys	p.E1017K	ENST00000302850	NM_000208.2	1017	Gag/Aag																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10249152	10249152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	59	592	1	ENST00000340748.4:c.4030G>A	p.Val1344Met	p.V1344M	ENST00000340748		1344	Gtg/Atg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17946809	17946809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	53	656	1	ENST00000458235.1:c.1838G>A	p.Arg613Gln	p.R613Q	ENST00000458235	NM_000215.3	613	cGa/cAa																																																																														
UPF1	5976	MSKCC	GRCh37	19	18974278	18974278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	62	492	0	ENST00000262803.5:c.2632G>A	p.Ala878Thr	p.A878T	ENST00000262803	NM_002911.3	878	Gca/Aca																																																																														
UPF1	5976	MSKCC	GRCh37	19	18974411	18974411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	34	387	0	ENST00000262803.5:c.2765C>T	p.Thr922Ile	p.T922I	ENST00000262803	NM_002911.3	922	aCt/aTt																																																																														
CIC	23152	MSKCC	GRCh37	19	42796745	42796745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	56	645	0	ENST00000575354.2:c.3203G>A	p.Gly1068Asp	p.G1068D	ENST00000575354	NM_015125.3	1068	gGt/gAt																																																																														
DNMT3A	1788	MSKCC	GRCh37	2	25523052	25523052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	54	590	1	ENST00000264709.3:c.133G>A	p.Ala45Thr	p.A45T	ENST00000264709	NM_175629.2	45	Gca/Aca																																																																														
MSH6	2956	MSKCC	GRCh37	2	48033729	48033729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	33	297	0	ENST00000234420.5:c.3940C>T	p.Gln1314Ter	p.Q1314*	ENST00000234420	NM_000179.2	1314	Caa/Taa																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212248612	212248612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	38	552	0	ENST00000342788.4:c.3655G>A	p.Ala1219Thr	p.A1219T	ENST00000342788	NM_005235.2	1219	Gct/Act																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267219	41267219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	39	409	0	ENST00000349496.5:c.803G>A	p.Gly268Glu	p.G268E	ENST00000349496	NM_001904.3	268	gGa/gAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41275654	41275654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	44	480	0	ENST00000349496.5:c.1549C>T	p.Leu517Phe	p.L517F	ENST00000349496	NM_001904.3	517	Ctt/Ttt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498438	89498438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	40	357	0	ENST00000336596.2:c.2410G>A	p.Ala804Thr	p.A804T	ENST00000336596	NM_005233.5	804	Gcc/Acc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134960089	134960089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	50	585	1	ENST00000398015.3:c.2446G>A	p.Glu816Lys	p.E816K	ENST00000398015	NM_004441.4	816	Gaa/Aaa																																																																														
ATR	545	MSKCC	GRCh37	3	142281495	142281495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	54	589	0	ENST00000350721.4:c.749G>A	p.Ser250Asn	p.S250N	ENST00000350721	NM_001184.3	250	aGc/aAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178942603	178942603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	35	251	1	ENST00000263967.3:c.2410G>A	p.Gly804Arg	p.G804R	ENST00000263967	NM_006218.2	804	Ggg/Agg																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1980628	1980628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	27	333	0	ENST00000382891.5:c.4090G>A	p.Gly1364Ser	p.G1364S	ENST00000382891	NM_133335.3	1364	Ggc/Agc																																																																														
KIT	3815	MSKCC	GRCh37	4	55594057	55594057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	49	452	2	ENST00000288135.5:c.1843G>A	p.Asp615Asn	p.D615N	ENST00000288135	NM_000222.2	615	Gat/Aat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244197	153244197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	46	436	1	ENST00000281708.4:c.1960G>A	p.Gly654Ser	p.G654S	ENST00000281708	NM_033632.3	654	Ggt/Agt																																																																														
TERT	7015	MSKCC	GRCh37	5	1294598	1294598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200843534		P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	36	307	0	ENST00000310581.5:c.403G>A	p.Gly135Arg	p.G135R	ENST00000310581	NM_198253.2	135	Ggg/Agg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176520306	176520306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	56	559	1	ENST00000292408.4:c.1225C>T	p.Leu409Phe	p.L409F	ENST00000292408	NM_213647.1	409	Ctc/Ttc																																																																														
IRF4	3662	MSKCC	GRCh37	6	401646	401646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	38	407	0	ENST00000380956.4:c.968G>A	p.Gly323Glu	p.G323E	ENST00000380956	NM_001195286.1	323	gGg/gAg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93956610	93956610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	26	420	0	ENST00000369303.4:c.2626G>A	p.Glu876Lys	p.E876K	ENST00000369303	NM_004440.3	876	Gag/Aag																																																																														
FYN	2534	MSKCC	GRCh37	6	112041059	112041059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	25	441	1	ENST00000368678.4:c.196G>A	p.Gly66Ser	p.G66S	ENST00000368678		66	Ggt/Agt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210074	55210074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	66	561	0	ENST00000275493.2:c.184C>T	p.Leu62Phe	p.L62F	ENST00000275493	NM_005228.3	62	Ctt/Ttt																																																																														
MET	4233	MSKCC	GRCh37	7	116435966	116435966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	53	548	1	ENST00000397752.3:c.3961C>T	p.His1321Tyr	p.H1321Y	ENST00000397752	NM_000245.2	1321	Cac/Tac																																																																														
RHEB	6009	MSKCC	GRCh37	7	151164230	151164230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	17	195	0	ENST00000262187.5:c.530G>A	p.Gly177Asp	p.G177D	ENST00000262187	NM_005614.3	177	gGc/gAc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68956748	68956748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	63	561	0	ENST00000288368.4:c.866C>T	p.Thr289Ile	p.T289I	ENST00000288368	NM_024870.2	289	aCa/aTa																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87635254	87635254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	48	401	0	ENST00000277120.3:c.2306C>T	p.Pro769Leu	p.P769L	ENST00000277120		769	cCc/cTc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250196	110250196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	63	546	0	ENST00000374672.4:c.479C>T	p.Pro160Leu	p.P160L	ENST00000374672	NM_004235.4	160	cCg/cTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139395300	139395300	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	52	518	0	ENST00000277541.6:c.5639-1G>A		p.X1880_splice	ENST00000277541	NM_017617.3	1880																																																																															
ARAF	369	MSKCC	GRCh37	X	47422398	47422398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	34	193	0	ENST00000377045.4:c.32G>A	p.Gly11Glu	p.G11E	ENST00000377045	NM_001654.4	11	gGg/gAg																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240692	53240692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	40	274	0	ENST00000375401.3:c.1388C>T	p.Thr463Ile	p.T463I	ENST00000375401	NM_004187.3	463	aCc/aTc																																																																														
STAG2	10735	MSKCC	GRCh37	X	123197837	123197837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	49	235	0	ENST00000218089.9:c.1961G>A	p.Arg654Lys	p.R654K	ENST00000218089	NM_001042749.1	654	aGa/aAa																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112919912	112919912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	16	125	0	ENST00000351677.2:c.1127C>T	p.Ala376Val	p.A376V	ENST00000351677	NM_002834.3	376	gCt/gTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1219388	1219388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	73	423	0	ENST00000326873.7:c.440G>A	p.Arg147His	p.R147H	ENST00000326873	NM_000455.4	147	cGt/cAt																																																																														
ATM	472	MSKCC	GRCh37	11	108141874	108141874	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	23	301	0	ENST00000278616.4:c.2921+1G>A		p.X974_splice	ENST00000278616	NM_000051.3	974																																																																															
TP53	7157	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0032870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	49	386	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	10032377	10032377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	18	242	0	ENST00000330684.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000330684	NM_001134407.1	149	gCg/gTg																																																																														
YES1	7525	MSKCC	GRCh37	18	736916	736916	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	104	542	1	ENST00000314574.4:c.1183C>T	p.Arg395Ter	p.R395*	ENST00000314574	NM_005433.3	395	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921550	178921551	+	inframe_insertion	In_Frame_Ins	INS	-	-	AATGTA			P-0032870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	33	244	0	ENST00000263967.3:c.1036_1041dup	p.Val346_Asn347dup	p.V346_N347dup	ENST00000263967	NM_006218.2	346	-/AATGTA																																																																														
EIF4A2	1974	MSKCC	GRCh37	3	186503985	186503985	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	30	218	0	ENST00000323963.5:c.550G>T	p.Glu184Ter	p.E184*	ENST00000323963		184	Gaa/Taa																																																																														
CCND3	896	MSKCC	GRCh37	6	41903703	41903703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	154	487	0	ENST00000372991.4:c.854C>T	p.Thr285Ile	p.T285I	ENST00000372991	NM_001760.3	285	aCa/aTa																																																																														
FYN	2534	MSKCC	GRCh37	6	112020718	112020718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0032870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	63	186	0	ENST00000368678.4:c.853G>C	p.Gly285Arg	p.G285R	ENST00000368678		285	Ggt/Cgt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151900032	151900032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	17	324	0	ENST00000262189.6:c.4079C>T	p.Pro1360Leu	p.P1360L	ENST00000262189	NM_170606.2	1360	cCt/cTt																																																																														
NBN	4683	MSKCC	GRCh37	8	90996759	90996759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	41	325	1	ENST00000265433.3:c.31G>A	p.Ala11Thr	p.A11T	ENST00000265433	NM_002485.4	11	Gca/Aca																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772713	135772713	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	30	413	0	ENST00000298552.3:c.2833G>C	p.Glu945Gln	p.E945Q	ENST00000298552	NM_001162426.1	945	Gag/Cag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	39	333	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
GNA11	2767	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	69	641	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267436	198267436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	49	400	0	ENST00000335508.6:c.1921A>G	p.Ile641Val	p.I641V	ENST00000335508	NM_012433.2	641	Att/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0032874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	89	466	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0032874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	188	421	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
AC004906.3	0	MSKCC	GRCh37	7	2984143	2984143	+	splice_donor_variant,non_coding_transcript_variant	Splice_Site	SNP	G	G	C			P-0032874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	74	327	0	ENST00000423194.1:n.474+1G>C		p.X158_splice	ENST00000423194		158																																																																															
AMER1	139285	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	19	446	1	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	29	458	0	ENST00000269305.4:c.706T>A	p.Tyr236Asn	p.Y236N	ENST00000269305	NM_001126112.2	236	Tac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	112	671	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	62	495	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89712017	89712017	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	15	145	0	ENST00000371953.3:c.634+1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
MTOR	2475	MSKCC	GRCh37	1	11298581	11298581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	66	463	0	ENST00000361445.4:c.1880C>T	p.Ser627Phe	p.S627F	ENST00000361445	NM_004958.3	627	tCc/tTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717646	89717647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	77	438	0	ENST00000371953.3:c.672dup	p.Tyr225IlefsTer18	p.Y225Ifs*18	ENST00000371953	NM_000314.4	224	ata/atAa																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14316397	14316397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	65	510	0	ENST00000256196.4:c.208G>A	p.Ala70Thr	p.A70T	ENST00000256196		70	Gca/Aca																																																																														
IRF4	3662	MSKCC	GRCh37	6	407576	407576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	83	426	1	ENST00000380956.4:c.1334G>A	p.Arg445His	p.R445H	ENST00000380956	NM_001195286.1	445	cGc/cAc																																																																														
MED12	9968	MSKCC	GRCh37	X	70339251	70339251	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1584	80	682	0	ENST00000374080.3:c.128A>C	p.Gln43Pro	p.Q43P	ENST00000374080		43	cAa/cCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	46	562	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0018585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	32	509	1	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	41	461	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577564	7577564	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	38	492	0	ENST00000269305.4:c.717C>G	p.Asn239Lys	p.N239K	ENST00000269305	NM_001126112.2	239	aaC/aaG																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411936	63411936	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	55	799	1	ENST00000330258.3:c.1231G>T	p.Glu411Ter	p.E411*	ENST00000330258	NM_152424.3	411	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	154	549	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NTRK1	4914	MSKCC	GRCh37	1	156841422	156841422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	20	398	0	ENST00000524377.1:c.725G>A	p.Gly242Glu	p.G242E	ENST00000524377	NM_002529.3	242	gGg/gAg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17125855	17125855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	94	584	2	ENST00000285071.4:c.739G>A	p.Asp247Asn	p.D247N	ENST00000285071	NM_144997.5	247	Gat/Aat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	317	431	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0030669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	199	333	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	624	559	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
GNAS	2778	MSKCC	GRCh37	20	57478633	57478633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	292	479	1	ENST00000371085.3:c.305C>T	p.Ala102Val	p.A102V	ENST00000371085	NM_000516.4	102	gCg/gTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48923155	48923156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			10	53	312	0	ENST00000267163.4:c.606dup	p.Gly203ArgfsTer9	p.G203Rfs*9	ENST00000267163	NM_000321.2	201	-/A																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371646	89371646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	257	519	0	ENST00000301030.4:c.194G>T	p.Gly65Val	p.G65V	ENST00000301030	NM_001256183.1	65	gGc/gTc																																																																														
CDKN2C	1031	MSKCC	GRCh37	1	51436167	51436167	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	29	296	0	ENST00000262662.1:c.127C>A	p.Gln43Lys	p.Q43K	ENST00000262662		43	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	471	693	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46285666	46285666	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	94	469	0	ENST00000334344.6:c.5026C>T	p.Gln1676Ter	p.Q1676*	ENST00000334344	NM_152641.2	1676	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105554	27105560	+	frameshift_variant	Frame_Shift_Del	DEL	GATGCCT	GATGCCT	-			P-0032642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	93	492	0	ENST00000324856.7:c.5168_5174del	p.Cys1723LeufsTer7	p.C1723Lfs*7	ENST00000324856	NM_006015.4	1722	cGATGCCTg/cg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632744	23632744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	112	565	0	ENST00000261584.4:c.3052G>A	p.Glu1018Lys	p.E1018K	ENST00000261584	NM_024675.3	1018	Gag/Aag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15961862	15962884	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGACTTATCACCTCAATAGCATCGCTAGGTGTTTCATACCTGTGAGAAGATACTTTAAGAAAAGAAAATCTTATTTCAAAACTAATCCCAGGAAAAGTTTCTGAAGTCTAAGTTCTTCACACCTGTAGCATTTTTTCAATTCTGATCCACCATGTTCAAAGGTATTCCAGGTTAATGAGGGTTTTCTGAAGTTTTATGGGCTTTAAGACATGTTTTAGGCTGGGTGCAGTGGCTCATGGCTGTAATCCCAGCACTTTGGAAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGGGTTTGAGACCAGCCTGACCAACGTGGAGAAACCCTGTCTCTACTAAAAAAAATACAAAATTAGTAGGGCGTGGTAGCTCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCCGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGTGGTGAGCTGAGATTGTGTCATTGCACTCCATTCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGACATGTTTTAAAGCCCAATAATAAACACTGGAATGAGGCAGAACAGAGAACAGATTTATGATATTTTCCTGGGAGCTGGAAAAGAAATCACCAGGGAAACATTTATGGAAGAGGTTAATAAACAAATGAGGGAGTAGATCTCAATAACTGATTCCAATGATTCCAATTCTGTGGGACACTCTGTTCTTAGAAAAACGCTGAGGCTATAAAGCTGCTTCATTCACCACCATGATGATTTTAAAGCTATGGATTATATAACACTATATAATGATTTTCTCAAATAAATGGAGTATTGCTAACAAAACTTACTCCAAACATTAATAATTTTTTAGCACTGTGTTACATTGTGAAAATAACCAGAAATGGTAGAGAATGTCTGAAGGGAAGTATATTCCCAGAAAGGGAGGATGTCAACCAACTCTGGAGGATACCCACATCAGAAAAGGACCTCCTCTAAGACACAGTTCCCAAGTAAACAGAGGGCTATGCAGTG	GGACTTATCACCTCAATAGCATCGCTAGGTGTTTCATACCTGTGAGAAGATACTTTAAGAAAAGAAAATCTTATTTCAAAACTAATCCCAGGAAAAGTTTCTGAAGTCTAAGTTCTTCACACCTGTAGCATTTTTTCAATTCTGATCCACCATGTTCAAAGGTATTCCAGGTTAATGAGGGTTTTCTGAAGTTTTATGGGCTTTAAGACATGTTTTAGGCTGGGTGCAGTGGCTCATGGCTGTAATCCCAGCACTTTGGAAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGGGTTTGAGACCAGCCTGACCAACGTGGAGAAACCCTGTCTCTACTAAAAAAAATACAAAATTAGTAGGGCGTGGTAGCTCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCCGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGTGGTGAGCTGAGATTGTGTCATTGCACTCCATTCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGACATGTTTTAAAGCCCAATAATAAACACTGGAATGAGGCAGAACAGAGAACAGATTTATGATATTTTCCTGGGAGCTGGAAAAGAAATCACCAGGGAAACATTTATGGAAGAGGTTAATAAACAAATGAGGGAGTAGATCTCAATAACTGATTCCAATGATTCCAATTCTGTGGGACACTCTGTTCTTAGAAAAACGCTGAGGCTATAAAGCTGCTTCATTCACCACCATGATGATTTTAAAGCTATGGATTATATAACACTATATAATGATTTTCTCAAATAAATGGAGTATTGCTAACAAAACTTACTCCAAACATTAATAATTTTTTAGCACTGTGTTACATTGTGAAAATAACCAGAAATGGTAGAGAATGTCTGAAGGGAAGTATATTCCCAGAAAGGGAGGATGTCAACCAACTCTGGAGGATACCCACATCAGAAAAGGACCTCCTCTAAGACACAGTTCCCAAGTAAACAGAGGGCTATGCAGTG	-			P-0032642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	91	481	0	ENST00000268712.3:c.5882-971_5933del		p.X1961_splice	ENST00000268712	NM_006311.3	1961																																																																															
YES1	7525	MSKCC	GRCh37	18	751744	751744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	103	558	0	ENST00000314574.4:c.332C>T	p.Ser111Leu	p.S111L	ENST00000314574	NM_005433.3	111	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	126	697	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0032644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	109	458	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	48	474	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	72	384	1	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	660	769	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564511	86564511	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	320	589	4	ENST00000274376.6:c.248del	p.Gly83GlufsTer4	p.G83Efs*4	ENST00000274376	NM_002890.2	81	ctG/ct																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46805562	46805562	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	228	876	0	ENST00000290295.7:c.394G>T	p.Gly132Ter	p.G132*	ENST00000290295	NM_006361.5	132	Gga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65304246	65304246	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	421	458	0	ENST00000342505.4:c.2869G>T	p.Glu957Ter	p.E957*	ENST00000342505	NM_002227.2	957	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48942661	48942661	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0032648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	171	285	0	ENST00000267163.4:c.1050-2A>G		p.X350_splice	ENST00000267163	NM_000321.2	350																																																																															
NUP93	9688	MSKCC	GRCh37	16	56868147	56868163	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTACTTCTATTTCCT	CAGTACTTCTATTTCCT	-			P-0032648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	122	645	0	ENST00000308159.5:c.1648_1664del	p.Tyr550GlyfsTer2	p.Y550Gfs*2	ENST00000308159	NM_014669.4	549	CAGTACTTCTATTTCCTc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	117	465	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	33	502	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	308	669	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	54	239	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	79	313	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																														
NF1	4763	MSKCC	GRCh37	17	29552198	29552198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	28	442	0	ENST00000358273.4:c.1931C>T	p.Ser644Phe	p.S644F	ENST00000358273	NM_001042492.2	644	tCc/tTc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50450363	50450363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	205	427	0	ENST00000331340.3:c.547C>T	p.Arg183Cys	p.R183C	ENST00000331340	NM_006060.4	183	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36229244	36229245	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAATGCCGCCCGCTTCAT			P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	67	674	0	ENST00000222270.7:c.7938_7955dup	p.Ala2647_Asn2652dup	p.A2647_N2652dup	ENST00000222270	NM_014727.1	2647	ggc/ggCAATGCCGCCCGCTTCATc																																																																														
ATRX	546	MSKCC	GRCh37	X	76856028	76856028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	97	386	0	ENST00000373344.5:c.5572G>A	p.Gly1858Ser	p.G1858S	ENST00000373344	NM_000489.3	1858	Ggc/Agc																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	322	595	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	73	583	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																														
CDH1	999	MSKCC	GRCh37	16	68771344	68771344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	30	271	0	ENST00000261769.5:c.26C>A	p.Ser9Ter	p.S9*	ENST00000261769	NM_004360.3	9	tCg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	151	748	0	ENST00000269305.4:c.559G>A	p.Gly187Ser	p.G187S	ENST00000269305	NM_001126112.2	187	Ggt/Agt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944614	32944614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	93	764	1	ENST00000380152.3:c.8407C>A	p.Leu2803Met	p.L2803M	ENST00000380152		2803	Ctg/Atg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32944624	32944624	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	100	746	0	ENST00000380152.3:c.8417C>A	p.Ser2806Ter	p.S2806*	ENST00000380152		2806	tCa/tAa																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11998913	11998913	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	81	263	1	ENST00000353533.5:c.415del	p.Glu139LysfsTer13	p.E139Kfs*13	ENST00000353533	NM_003010.3	139	Gaa/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218849	36218849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	169	750	0	ENST00000222270.7:c.4460G>A	p.Arg1487His	p.R1487H	ENST00000222270	NM_014727.1	1487	cGc/cAc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138375052	138375052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	58	489	0	ENST00000289153.2:c.3007C>T	p.Leu1003Phe	p.L1003F	ENST00000289153	NM_006219.2	1003	Ctc/Ttc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110250104	110250104	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	67	741	0	ENST00000374672.4:c.571A>T	p.Asn191Tyr	p.N191Y	ENST00000374672	NM_004235.4	191	Aac/Tac																																																																														
STAG2	10735	MSKCC	GRCh37	X	123184154	123184154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	50	430	0	ENST00000218089.9:c.1012G>T	p.Asp338Tyr	p.D338Y	ENST00000218089	NM_001042749.1	338	Gat/Tat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	186	338	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	121	305	0				ENST00000310581	NM_198253.2																																																																																
BCOR	54880	MSKCC	GRCh37	X	39911490	39911490	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			71	303	332	1	ENST00000378444.4:c.5140del	p.Glu1714LysfsTer11	p.E1714Kfs*11	ENST00000378444	NM_001123385.1	1714	Gaa/aa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125503217	125503217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	29	370	0	ENST00000428830.2:c.584G>A	p.Gly195Glu	p.G195E	ENST00000428830	NM_001114121.2	195	gGa/gAa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36986930	36986931	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0002986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	209	603	1	ENST00000354822.5:c.758_759delinsTT	p.Lys253Ile	p.K253I	ENST00000354822	NM_001079668.2	253	aAG/aTT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55087048	55087048	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	101	302	0	ENST00000275493.2:c.79del	p.Glu27LysfsTer53	p.E27Kfs*53	ENST00000275493	NM_005228.3	26	gaG/ga																																																																														
KIT	3815	MSKCC	GRCh37	4	55593599	55593655	+	inframe_deletion	In_Frame_Del	DEL	ACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCAAC	ACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCAAC	-			P-0003384-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	188	347	0	ENST00000288135.5:c.1668_1724del	p.Trp557_Gln575del	p.W557_Q575del	ENST00000288135	NM_000222.2	555	gtACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCAACa/gta																																																																														
KIT	3815	MSKCC	GRCh37	4	55599333	55599333	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003384-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	19	415	0	ENST00000288135.5:c.2459A>C	p.Asp820Ala	p.D820A	ENST00000288135	NM_000222.2	820	gAt/gCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	143	249	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0006671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	330	384	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0006671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	204	431	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008359-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	40	612	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																																																														
BARD1	580	MSKCC	GRCh37	2	215645983	215645984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008359-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	61	473	0	ENST00000260947.4:c.614dup	p.Gln206AlafsTer8	p.Q206Afs*8	ENST00000260947	NM_000465.2	205	aag/aaAg																																																																														
REL	5966	MSKCC	GRCh37	2	61121613	61121613	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008359-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	110	333	0	ENST00000295025.8:c.235T>G	p.Leu79Val	p.L79V	ENST00000295025	NM_002908.2	79	Tta/Gta																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55141140	55141140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0008359-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	50	301	0	ENST00000257290.5:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000257290	NM_006206.4	596	Ggt/Cgt																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55146588	55146588	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008359-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	110	466	1	ENST00000257290.5:c.2262T>A	p.Tyr754Ter	p.Y754*	ENST00000257290	NM_006206.4	754	taT/taA																																																																														
TERT	7015	MSKCC	GRCh37	5	1294330	1294330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008359-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	24	395	1	ENST00000310581.5:c.671G>A	p.Arg224His	p.R224H	ENST00000310581	NM_198253.2	224	cGc/cAc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495610	56495610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008359-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	63	434	0	ENST00000267101.3:c.3800G>T	p.Arg1267Leu	p.R1267L	ENST00000267101	NM_001982.3	1267	cGa/cTa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99478132	99478132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008359-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	46	428	0	ENST00000268035.6:c.3036G>A	p.Met1012Ile	p.M1012I	ENST00000268035	NM_000875.3	1012	atG/atA																																																																														
DIS3	22894	MSKCC	GRCh37	13	73334738	73334740	+	inframe_deletion	In_Frame_Del	DEL	TAA	TAA	-			P-0008359-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	54	326	0	ENST00000377767.4:c.2720_2722del	p.Val907_Lys908delinsGlu	p.V907_K908delinsE	ENST00000377767	NM_014953.3	907	gTTAaa/gaa																																																																														
NF1	4763	MSKCC	GRCh37	17	29509620	29509621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008359-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	87	517	0	ENST00000358273.4:c.827dup	p.Leu276PhefsTer15	p.L276Ffs*15	ENST00000358273	NM_001042492.2	275	-/T																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71946948	71946948	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008359-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	38	672	1	ENST00000298229.2:c.2797G>T	p.Glu933Ter	p.E933*	ENST00000298229	NM_001567.3	933	Gaa/Taa																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59886112	59886113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008359-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	40	339	1	ENST00000259008.2:c.633dup	p.Gly212TrpfsTer5	p.G212Wfs*5	ENST00000259008	NM_032043.2	211	-/T																																																																														
PREX2	80243	MSKCC	GRCh37	8	69000024	69000024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008359-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	100	533	0	ENST00000288368.4:c.2093T>C	p.Val698Ala	p.V698A	ENST00000288368	NM_024870.2	698	gTt/gCt																																																																														
CDK6	1021	MSKCC	GRCh37	7	92354977	92354977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	71	288	0	ENST00000265734.4:c.500C>T	p.Ala167Val	p.A167V	ENST00000265734	NM_001259.6	167	gCc/gTc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			803	159	609	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			464	129	495	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52719125	52719125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			893	157	641	1	ENST00000322088.6:c.901G>A	p.Ala301Thr	p.A301T	ENST00000322088	NM_014225.5	301	Gca/Aca																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1226	219	769	2	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1300	242	960	7	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242794422	242794422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	224	867	0	ENST00000334409.5:c.520G>A	p.Val174Met	p.V174M	ENST00000334409	NM_005018.2	174	Gtg/Atg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491390	18491390	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			190	52	200	1	ENST00000266497.5:c.1309del	p.Ile437TyrfsTer5	p.I437Yfs*5	ENST00000266497		435	Aaa/aa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	222	773	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306930	65306930	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			428	124	406	0	ENST00000342505.4:c.2647G>T	p.Glu883Ter	p.E883*	ENST00000342505	NM_002227.2	883	Gag/Tag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098755	47098755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			671	217	680	0	ENST00000409792.3:c.6519G>A	p.Met2173Ile	p.M2173I	ENST00000409792	NM_014159.6	2173	atG/atA																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630275	187630275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			869	227	680	0	ENST00000441802.2:c.707G>A	p.Gly236Asp	p.G236D	ENST00000441802	NM_005245.3	236	gGc/gAc																																																																														
ABL1	25	MSKCC	GRCh37	9	133760526	133760526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	233	798	0	ENST00000318560.5:c.2849A>G	p.Gln950Arg	p.Q950R	ENST00000318560	NM_005157.4	950	cAg/cGg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829617	72829617	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	211	668	0	ENST00000268489.5:c.6964C>T	p.Arg2322Ter	p.R2322*	ENST00000268489	NM_006885.3	2322	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579344	7579344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			965	172	694	0	ENST00000269305.4:c.343C>T	p.His115Tyr	p.H115Y	ENST00000269305	NM_001126112.2	115	Cat/Tat																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11121082	11121082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	212	733	0	ENST00000344626.4:c.2149G>T	p.Glu717Ter	p.E717*	ENST00000344626	NM_003072.3	717	Gaa/Taa																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366384	15366384	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			623	130	465	0	ENST00000263377.2:c.1771A>G	p.Met591Val	p.M591V	ENST00000263377	NM_058243.2	591	Atg/Gtg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52621443	52621445	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			334	86	477	0	ENST00000394830.3:c.2972_2974del	p.Glu991del	p.E991del	ENST00000394830	NM_018313.4	991	gAAGtt/gtt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36213600	36213600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	258	1022	0	ENST00000222270.7:c.2702G>A	p.Arg901Gln	p.R901Q	ENST00000222270	NM_014727.1	901	cGg/cAg																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1475	267	819	0	ENST00000220592.5:c.1805_1806dup	p.Ala603ProfsTer93	p.A603Pfs*93	ENST00000220592	NM_012154.3	602	-/CC																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073615	8073616	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			584	92	427	0	ENST00000377482.5:c.1043dup	p.Thr349AspfsTer7	p.T349Dfs*7	ENST00000377482	NM_018948.3	348	ccg/ccCg																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562999	21562999	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			996	197	788	1	ENST00000382592.4:c.920del	p.Pro307LeufsTer126	p.P307Lfs*126	ENST00000382592	NM_014572.2	307	cCt/ct																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134897	41134897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			516	154	493	0	ENST00000379561.5:c.731G>A	p.Gly244Asp	p.G244D	ENST00000379561	NM_002015.3	244	gGc/gAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274088	10274088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	207	711	0	ENST00000330684.3:c.181G>A	p.Ala61Thr	p.A61T	ENST00000330684	NM_001134407.1	61	Gcg/Acg																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7984213	7984213	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			950	126	574	0	ENST00000319144.4:c.516del	p.Asn173ThrfsTer24	p.N173Tfs*24	ENST00000319144	NM_001139.2	172	ccC/cc																																																																														
MSI2	124540	MSKCC	GRCh37	17	55339537	55339537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			631	131	569	0	ENST00000284073.2:c.296G>A	p.Arg99His	p.R99H	ENST00000284073	NM_138962.2	99	cGt/cAt																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2207626	2207626	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	230	683	0	ENST00000398665.3:c.910T>C	p.Ser304Pro	p.S304P	ENST00000398665	NM_032482.2	304	Tcg/Ccg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228593	36228594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	254	824	0	ENST00000222270.7:c.7607_7608insT	p.Glu2536AspfsTer6	p.E2536Dfs*6	ENST00000222270	NM_014727.1	2536	gag/gaTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81334983	81334983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	51	402	0	ENST00000222390.5:c.1844A>G	p.Tyr615Cys	p.Y615C	ENST00000222390	NM_000601.4	615	tAt/tGt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864717	68864717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			634	173	564	1	ENST00000288368.4:c.88G>A	p.Glu30Lys	p.E30K	ENST00000288368	NM_024870.2	30	Gag/Aag																																																																														
RXRA	6256	MSKCC	GRCh37	9	137293522	137293522	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010331-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1536	247	1057	0	ENST00000481739.1:c.73C>T	p.Arg25Ter	p.R25*	ENST00000481739	NM_002957.4	25	Cga/Tga																																																																														
ATR	545	MSKCC	GRCh37	3	142281298	142281298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	179	515	0	ENST00000350721.4:c.946G>C	p.Val316Leu	p.V316L	ENST00000350721	NM_001184.3	316	Gtc/Ctc																																																																														
NF2	4771	MSKCC	GRCh37	22	30038234	30038236	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	AGG	AGG	TGCAGTAGAGCAC			P-0012818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	85	745	0	ENST00000338641.4:c.407_409delinsTGCAGTAGAGCAC	p.Glu136ValfsTer3	p.E136Vfs*3	ENST00000338641	NM_000268.3	136	gAGGct/gTGCAGTAGAGCACct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	331	668	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68856122	68856122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	251	558	0	ENST00000261769.5:c.1930G>A	p.Asp644Asn	p.D644N	ENST00000261769	NM_004360.3	644	Gac/Aac																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591051	67591072	+	protein_altering_variant	In_Frame_Del	DEL	CTTGAAGAAGCAGGCAGCTGAG	CTTGAAGAAGCAGGCAGCTGAG	T			P-0013145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	109	297	0	ENST00000274335.5:c.1644_1665delinsT	p.Leu549_Glu555del	p.L549_E555del	ENST00000274335		548	gaCTTGAAGAAGCAGGCAGCTGAG/gaT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	446	465	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	249	312	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	63	229	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	135	478	0	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
EZH2	2146	MSKCC	GRCh37	7	148524329	148524329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	385	420	0	ENST00000320356.2:c.655C>T	p.Pro219Ser	p.P219S	ENST00000320356	NM_004456.4	219	Cct/Tct																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733635	85733635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	199	636	0	ENST00000370580.1:c.377C>T	p.Pro126Leu	p.P126L	ENST00000370580	NM_003921.4	126	cCa/cTa																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156849897	156849897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	312	603	0	ENST00000524377.1:c.2153G>A	p.Trp718Ter	p.W718*	ENST00000524377	NM_002529.3	718	tGg/tAg																																																																														
ALK	238	MSKCC	GRCh37	2	29445417	29445417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	217	611	1	ENST00000389048.3:c.3416C>T	p.Pro1139Leu	p.P1139L	ENST00000389048	NM_004304.4	1139	cCc/cTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41267156	41267156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	109	349	2	ENST00000349496.5:c.740C>T	p.Pro247Leu	p.P247L	ENST00000349496	NM_001904.3	247	cCa/cTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89478294	89478294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	220	486	0	ENST00000336596.2:c.2113G>A	p.Gly705Ser	p.G705S	ENST00000336596	NM_005233.5	705	Ggt/Agt																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748095	41748095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	32	45	0	ENST00000226382.2:c.674G>A	p.Gly225Glu	p.G225E	ENST00000226382	NM_003924.3	225	gGg/gAg																																																																														
KDR	3791	MSKCC	GRCh37	4	55961023	55961023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	191	513	0	ENST00000263923.4:c.2917G>A	p.Ala973Thr	p.A973T	ENST00000263923	NM_002253.2	973	Gcc/Acc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722272	176722272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	221	567	0	ENST00000439151.2:c.7903G>A	p.Gly2635Arg	p.G2635R	ENST00000439151	NM_022455.4	2635	Ggg/Agg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180052998	180052998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	155	524	0	ENST00000261937.6:c.1292C>T	p.Ser431Phe	p.S431F	ENST00000261937	NM_182925.4	431	tCc/tTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2977657	2977657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	326	491	0	ENST00000396946.4:c.1027G>A	p.Glu343Lys	p.E343K	ENST00000396946	NM_032415.4	343	Gag/Aag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63530108	63530108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	228	623	0	ENST00000307078.5:c.2327C>T	p.Pro776Leu	p.P776L	ENST00000307078	NM_004655.3	776	cCa/cTa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11106952	11106952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	214	636	0	ENST00000344626.4:c.1657C>T	p.Leu553Phe	p.L553F	ENST00000344626	NM_003072.3	553	Ctc/Ttc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53246443	53246443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	257	390	1	ENST00000375401.3:c.539C>T	p.Pro180Leu	p.P180L	ENST00000375401	NM_004187.3	180	cCa/cTa																																																																														
POLE	5426	MSKCC	GRCh37	12	133242010	133242011	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0013341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	291	399	0	ENST00000320574.5:c.2345_2346delinsAT	p.Ala782Asp	p.A782D	ENST00000320574	NM_006231.2	782	gCC/gAT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	41	475	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TET1	80312	MSKCC	GRCh37	10	70333696	70333696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	64	714	0	ENST00000373644.4:c.1601C>T	p.Ser534Phe	p.S534F	ENST00000373644	NM_030625.2	534	tCt/tTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087494	27087502	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGGCATC	CCTGGCATC	G			P-0013839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	74	737	0	ENST00000324856.7:c.2068_2076delinsG	p.Pro690AlafsTer124	p.P690Afs*124	ENST00000324856	NM_006015.4	690	CCTGGCATC/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0014409-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	581	809	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9782609	9782609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014409-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	198	834	0	ENST00000377346.4:c.2371C>G	p.Leu791Val	p.L791V	ENST00000377346	NM_005026.3	791	Ctg/Gtg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640853	3640853	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117707719		P-0014409-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			716	224	782	0	ENST00000294008.3:c.2786C>T	p.Pro929Leu	p.P929L	ENST00000294008	NM_032444.2	929	cCg/cTg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131953818	131953818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014409-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	186	624	1	ENST00000265335.6:c.3221C>T	p.Ala1074Val	p.A1074V	ENST00000265335		1074	gCa/gTa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141566057	141566057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014409-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			839	108	815	0	ENST00000220592.5:c.1207G>C	p.Asp403His	p.D403H	ENST00000220592	NM_012154.3	403	Gat/Cat																																																																														
FANCA	2175	MSKCC	GRCh37	16	89882981	89882981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014409-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			119	26	189	0	ENST00000389301.3:c.43C>G	p.Pro15Ala	p.P15A	ENST00000389301	NM_000135.2	15	Cca/Gca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014409-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			839	149	902	0	ENST00000269305.4:c.610G>C	p.Glu204Gln	p.E204Q	ENST00000269305	NM_001126112.2	204	Gag/Cag																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56487250	56487250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	407	638	0	ENST00000267101.3:c.1396C>A	p.His466Asn	p.H466N	ENST00000267101	NM_001982.3	466	Cac/Aac																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061066	38061066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	160	240	0	ENST00000250448.2:c.923C>T	p.Pro308Leu	p.P308L	ENST00000250448	NM_004496.3	308	cCc/cTc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37657518	37657520	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-			P-0014467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	488	454	0	ENST00000447079.4:c.2436_2438del	p.Phe813del	p.F813del	ENST00000447079	NM_015083.1	812	gTATtt/gtt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55241737	55241737	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0014467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	74	415	0	ENST00000275493.2:c.2184+1G>C		p.X728_splice	ENST00000275493	NM_005228.3	728																																																																															
APC	324	MSKCC	GRCh37	5	112174475	112174475	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017907-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	74	284	0	ENST00000257430.4:c.3184C>T	p.Gln1062Ter	p.Q1062*	ENST00000257430	NM_000038.5	1062	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	251	518	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0018760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	121	237	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577579	7577579	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0018760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	255	492	0	ENST00000269305.4:c.702C>G	p.Tyr234Ter	p.Y234*	ENST00000269305	NM_001126112.2	234	taC/taG																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5223237	5223237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	413	519	1	ENST00000357368.4:c.2566G>T	p.Ala856Ser	p.A856S	ENST00000357368	NM_002850.3	856	Gct/Tct																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161479	2161479	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			867	229	435	0	ENST00000434045.2:c.48A>C	p.Glu16Asp	p.E16D	ENST00000434045	NM_001127598.1	16	gaA/gaC																																																																														
BRCA2	675	MSKCC	GRCh37	13	32918718	32918718	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	25	146	0	ENST00000380152.3:c.6865T>G	p.Leu2289Val	p.L2289V	ENST00000380152		2289	Tta/Gta																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1800982	1800982	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0018760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			869	61	564	0	ENST00000260795.2:c.111A>C	p.Glu37Asp	p.E37D	ENST00000260795		37	gaA/gaC																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145738635	145738635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	204	409	0	ENST00000428558.2:c.2429A>G	p.Gln810Arg	p.Q810R	ENST00000428558	NM_004260.3	810	cAg/cGg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396463	139396463	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1579	147	511	0	ENST00000277541.6:c.5462A>C	p.Lys1821Thr	p.K1821T	ENST00000277541	NM_017617.3	1821	aAg/aCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438587	49438587	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024797-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	181	582	0	ENST00000301067.7:c.4903del	p.Gly1636AlafsTer86	p.G1636Afs*86	ENST00000301067	NM_003482.3	1635	Ctt/tt																																																																														
RB1	5925	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024797-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	110	488	0	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024797-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	544	547	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11095002	11095002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024797-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	613	604	0	ENST00000344626.4:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000344626	NM_003072.3	59	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024797-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	457	262	0				ENST00000310581	NM_198253.2																																																																																
DUSP4	1846	MSKCC	GRCh37	8	29207631	29207632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024797-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	169	549	0	ENST00000240100.2:c.164dup	p.His56AlafsTer15	p.H56Afs*15	ENST00000240100	NM_001394.6	55	gcg/gcCg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026821-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			509	329	692	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976742	2976742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026821-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	63	796	1	ENST00000396946.4:c.1270C>T	p.Arg424Trp	p.R424W	ENST00000396946	NM_032415.4	424	Cgg/Tgg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28959120	28959120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	150	485	3	ENST00000282397.4:c.2018C>T	p.Ala673Val	p.A673V	ENST00000282397	NM_002019.4	673	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	144	687	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	113	518	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
AR	367	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	170	353	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
AR	367	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			86	190	299	2	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																														
AR	367	MSKCC	GRCh37	X	66931247	66931247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			65	77	212	0	ENST00000374690.3:c.1889G>A	p.Arg630Gln	p.R630Q	ENST00000374690	NM_000044.3	630	cGg/cAg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	166	584	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	173	563	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	111	694	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	124	414	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89857933	89857933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			543	35	551	0	ENST00000389301.3:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000389301	NM_000135.2	413	Cgt/Tgt																																																																														
CIC	23152	MSKCC	GRCh37	19	42795269	42795269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	96	676	2	ENST00000575354.2:c.2353delG	p.Ala785ProfsTer139	p.A785Pfs*139	ENST00000575354	NM_015125.3	783	caG/ca																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3841994	3841994	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	121	520	0	ENST00000262367.5:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000262367	NM_004380.2	440	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713414	40713414	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	178	706	1	ENST00000373198.4:c.4101del	p.Ser1368ProfsTer31	p.S1368Pfs*31	ENST00000373198	NM_133170.3	1367	ccC/cc																																																																														
EP300	2033	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			659	47	814	0	ENST00000263253.7:c.6970delC	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																														
TET2	54790	MSKCC	GRCh37	4	106156729	106156729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	146	489	1	ENST00000380013.4:c.1630C>T	p.Arg544Ter	p.R544*	ENST00000380013	NM_001127208.2	544	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830135	72830135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	215	669	0	ENST00000268489.5:c.6446G>A	p.Arg2149His	p.R2149H	ENST00000268489	NM_006885.3	2149	cGc/cAc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46246488	46246488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	82	343	0	ENST00000334344.6:c.4582G>A	p.Ala1528Thr	p.A1528T	ENST00000334344	NM_152641.2	1528	Gca/Aca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	82	537	0	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																														
PGR	5241	MSKCC	GRCh37	11	100998888	100998888	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	91	694	0	ENST00000325455.5:c.914A>G	p.His305Arg	p.H305R	ENST00000325455	NM_001202474.3	305	cAc/cGc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118391565	118391565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	44	440	0	ENST00000534358.1:c.11483delA	p.Lys3828ArgfsTer31	p.K3828Rfs*31	ENST00000534358	NM_005933.3	3826	ttA/tt																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	170	697	12	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																														
PRKAR1A	5573	MSKCC	GRCh37	17	66511574	66511574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	149	383	0	ENST00000358598.2:c.34G>A	p.Ala12Thr	p.A12T	ENST00000358598	NM_212471.2	12	Gca/Aca																																																																														
CDK8	1024	MSKCC	GRCh37	13	26959366	26959366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	99	510	0	ENST00000381527.3:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000381527	NM_001260.1	178	cGa/cAa																																																																														
FANCA	2175	MSKCC	GRCh37	16	89831345	89831346	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	131	656	4	ENST00000389301.3:c.2730_2731del	p.Trp911AspfsTer31	p.W911Dfs*31	ENST00000389301	NM_000135.2	910	ctCTgg/ctgg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622410	1622410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	145	651	0	ENST00000344749.5:c.554A>G	p.Tyr185Cys	p.Y185C	ENST00000344749	NM_001136139.2	185	tAc/tGc																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599938	28599938	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148305939		P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	33	613	2	ENST00000253063.3:c.820C>T	p.Arg274Trp	p.R274W	ENST00000253063	NM_031459.4	274	Cgg/Tgg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65321263	65321263	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			527	148	693	1	ENST00000342505.4:c.1577T>C	p.Leu526Pro	p.L526P	ENST00000342505	NM_002227.2	526	cTc/cCc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440528	49440528	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	74	828	0	ENST00000301067.7:c.4282A>G	p.Ile1428Val	p.I1428V	ENST00000301067	NM_003482.3	1428	Att/Gtt																																																																														
FLT3	2322	MSKCC	GRCh37	13	28608530	28608530	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	180	621	0	ENST00000241453.7:c.1612A>G	p.Ile538Val	p.I538V	ENST00000241453	NM_004119.2	538	Atc/Gtc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606082	81606082	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	173	604	1	ENST00000298171.2:c.752A>T	p.Glu251Val	p.E251V	ENST00000298171	NM_000369.2	251	gAa/gTa																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99482481	99482481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	191	641	0	ENST00000268035.6:c.3349G>A	p.Gly1117Arg	p.G1117R	ENST00000268035	NM_000875.3	1117	Gga/Aga																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129088	2129088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	154	610	0	ENST00000219476.3:c.3022G>A	p.Val1008Met	p.V1008M	ENST00000219476	NM_000548.3	1008	Gtg/Atg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3647685	3647685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	231	842	0	ENST00000294008.3:c.1378C>T	p.Arg460Cys	p.R460C	ENST00000294008	NM_032444.2	460	Cgc/Tgc																																																																														
MALT1	10892	MSKCC	GRCh37	18	56381339	56381339	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	120	369	0	ENST00000348428.3:c.983C>A	p.Pro328His	p.P328H	ENST00000348428	NM_006785.3	328	cCt/cAt																																																																														
STK11	6794	MSKCC	GRCh37	19	1223057	1223057	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			810	152	782	0	ENST00000326873.7:c.994T>C	p.Trp332Arg	p.W332R	ENST00000326873	NM_000455.4	332	Tgg/Cgg																																																																														
BRD4	23476	MSKCC	GRCh37	19	15353755	15353755	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			629	141	668	0	ENST00000263377.2:c.3125A>G	p.His1042Arg	p.H1042R	ENST00000263377	NM_058243.2	1042	cAc/cGc																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1957865	1957865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	171	629	1	ENST00000382891.5:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000382891	NM_133335.3	944	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112173251	112173251	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	57	238	0	ENST00000257430.4:c.1960C>T	p.Gln654Ter	p.Q654*	ENST00000257430	NM_000038.5	654	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112179089	112179089	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	73	410	0	ENST00000257430.4:c.7798C>T	p.Gln2600Ter	p.Q2600*	ENST00000257430	NM_000038.5	2600	Caa/Taa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32170208	32170208	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	152	806	0	ENST00000375023.3:c.3400T>C	p.Cys1134Arg	p.C1134R	ENST00000375023	NM_004557.3	1134	Tgt/Cgt																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001258	150001258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	165	718	0	ENST00000253339.5:c.2346G>A	p.Met782Ile	p.M782I	ENST00000253339		782	atG/atA																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945685	151945685	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			808	218	853	0	ENST00000262189.6:c.1834A>G	p.Asn612Asp	p.N612D	ENST00000262189	NM_170606.2	612	Aat/Gat																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145736926	145736926	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	154	728	0	ENST00000428558.2:c.3515A>G	p.Tyr1172Cys	p.Y1172C	ENST00000428558	NM_004260.3	1172	tAc/tGc																																																																														
MED12	9968	MSKCC	GRCh37	X	70352259	70352259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027637-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	18	374	0	ENST00000374080.3:c.4286C>T	p.Ala1429Val	p.A1429V	ENST00000374080		1429	gCc/gTc																																																																														
VHL	7428	MSKCC	GRCh37	3	10183733	10183764	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCGCGAGCCCTCCCAGGTCATCTTCTGCAA	TCGCGCGAGCCCTCCCAGGTCATCTTCTGCAA	-			P-0028313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	84	660	0	ENST00000256474.2:c.206_237del	p.Arg69GlnfsTer52	p.R69Qfs*52	ENST00000256474	NM_000551.3	68	TCGCGCGAGCCCTCCCAGGTCATCTTCTGCAAt/t																																																																														
SETD2	29072	MSKCC	GRCh37	3	47144871	47144871	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	175	703	0	ENST00000409792.3:c.4882A>G	p.Asn1628Asp	p.N1628D	ENST00000409792	NM_014159.6	1628	Aat/Gat																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52597511	52597511	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0028313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	77	334	0	ENST00000394830.3:c.3801-2A>C		p.X1267_splice	ENST00000394830	NM_018313.4	1267																																																																															
PIK3CG	5294	MSKCC	GRCh37	7	106508373	106508373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			226	34	302	0	ENST00000359195.3:c.367C>A	p.Arg123Ser	p.R123S	ENST00000359195	NM_002649.2	123	Cgc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578199	7578208	+	frameshift_variant	Frame_Shift_Del	DEL	ACCACACTAT	ACCACACTAT	-			P-0029640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	161	824	0	ENST00000269305.4:c.641_650del	p.His214ArgfsTer30	p.H214Rfs*30	ENST00000269305	NM_001126112.2	214	cATAGTGTGGTg/cg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40441521	40441521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	54	961	0	ENST00000345506.4:c.92G>C	p.Arg31Pro	p.R31P	ENST00000345506	NM_003152.3	31	cGg/cCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	22	602	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0029657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	8	554	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	20	686	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	56	385	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	41	626	0	ENST00000269305.4:c.503A>T	p.His168Leu	p.H168L	ENST00000269305	NM_001126112.2	168	cAc/cTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057685	27057685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	45	622	0	ENST00000324856.7:c.1393C>T	p.Gln465Ter	p.Q465*	ENST00000324856	NM_006015.4	465	Cag/Tag																																																																														
CIC	23152	MSKCC	GRCh37	19	42795612	42795612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	65	807	0	ENST00000575354.2:c.2692C>T	p.Pro898Ser	p.P898S	ENST00000575354	NM_015125.3	898	Ccc/Tcc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356160	66356160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	71	468	0	ENST00000273854.3:c.1337G>T	p.Gly446Val	p.G446V	ENST00000273854	NM_004439.5	446	gGa/gTa																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53239954	53239954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	64	638	0	ENST00000375401.3:c.1487G>C	p.Gly496Ala	p.G496A	ENST00000375401	NM_004187.3	496	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	188	670	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	94	585	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952086	178952086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	16	503	0	ENST00000263967.3:c.3141T>A	p.His1047Gln	p.H1047Q	ENST00000263967	NM_006218.2	1047	caT/caA																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67200493	67200493	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	185	729	0	ENST00000312629.5:c.687C>G	p.Phe229Leu	p.F229L	ENST00000312629	NM_003952.2	229	ttC/ttG																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120836	115120865	+	inframe_deletion	In_Frame_Del	DEL	GGCAGCGAGAGCGCCGCCGCGCCGTTGGGA	GGCAGCGAGAGCGCCGCCGCGCCGTTGGGA	-			P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	43	454	0	ENST00000257566.3:c.141_170del	p.Pro48_Pro57del	p.P48_P57del	ENST00000257566	NM_016569.3	47	ccTCCCAACGGCGCGGCGGCGCTCTCGCTGCCg/ccg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48586274	48586274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	27	488	0	ENST00000342988.3:c.943T>C	p.Ser315Pro	p.S315P	ENST00000342988	NM_005359.5	315	Tcc/Ccc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739066	40739066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	174	564	1	ENST00000373198.4:c.3218G>T	p.Gly1073Val	p.G1073V	ENST00000373198	NM_133170.3	1073	gGc/gTc																																																																														
ATR	545	MSKCC	GRCh37	3	142278285	142278285	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0030169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	145	515	0	ENST00000350721.4:c.1542-2A>C		p.X514_splice	ENST00000350721	NM_001184.3	514																																																																															
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	193	327	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	153	419	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	171	464	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925328	114925328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	179	463	0	ENST00000543371.1:c.1406G>A	p.Cys469Tyr	p.C469Y	ENST00000543371	NM_001198531.1	469	tGc/tAc																																																																														
CCND1	595	MSKCC	GRCh37	11	69457942	69457942	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	145	385	0	ENST00000227507.2:c.342G>C	p.Lys114Asn	p.K114N	ENST00000227507	NM_053056.2	114	aaG/aaC																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435688	18435688	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	53	176	0	ENST00000266497.5:c.673A>G	p.Ile225Val	p.I225V	ENST00000266497		225	Ata/Gta																																																																														
RECQL	5965	MSKCC	GRCh37	12	21643285	21643285	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	195	492	0	ENST00000421138.2:c.242A>G	p.Asp81Gly	p.D81G	ENST00000421138		81	gAt/gGt																																																																														
TBX3	6926	MSKCC	GRCh37	12	115118949	115118949	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	83	216	0	ENST00000257566.3:c.392G>T	p.Arg131Leu	p.R131L	ENST00000257566	NM_016569.3	131	cGa/cTa																																																																														
ALK	238	MSKCC	GRCh37	2	29436908	29436908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	157	526	0	ENST00000389048.3:c.3685G>A	p.Val1229Met	p.V1229M	ENST00000389048	NM_004304.4	1229	Gtg/Atg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89390945	89390945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	113	374	0	ENST00000336596.2:c.1011C>G	p.Asn337Lys	p.N337K	ENST00000336596	NM_005233.5	337	aaC/aaG																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71945418	71945422	+	frameshift_variant	Frame_Shift_Del	DEL	TCTAC	TCTAC	-			P-0030370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	159	569	0	ENST00000298229.2:c.2311_2315del	p.Ser771LeufsTer10	p.S771Lfs*10	ENST00000298229	NM_001567.3	769	tTCTAC/t																																																																														
CDH1	999	MSKCC	GRCh37	16	68867255	68867256	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	173	486	0	ENST00000261769.5:c.2503dup	p.Tyr835LeufsTer2	p.Y835Lfs*2	ENST00000261769	NM_004360.3	834	-/T																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	98	201	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954172	32954172	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030396-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	134	359	0	ENST00000380152.3:c.9146A>G	p.Tyr3049Cys	p.Y3049C	ENST00000380152		3049	tAc/tGc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37627827	37627827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	34	589	1	ENST00000447079.4:c.1742C>T	p.Thr581Ile	p.T581I	ENST00000447079	NM_015083.1	581	aCt/aTt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53240738	53240738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	14	326	0	ENST00000375401.3:c.1342G>T	p.Glu448Ter	p.E448*	ENST00000375401	NM_004187.3	448	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	121	344	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	400	664	0	ENST00000171111.5:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000171111	NM_203500.1	413	cGt/cTt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52712520	52712520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	137	334	0	ENST00000394830.3:c.232C>T	p.Arg78Ter	p.R78*	ENST00000394830	NM_018313.4	78	Cga/Tga																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52714601	52714601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	300	494	0	ENST00000322088.6:c.359C>T	p.Ser120Leu	p.S120L	ENST00000322088	NM_014225.5	120	tCg/tTg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120466569	120466569	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	108	428	0	ENST00000256646.2:c.4550A>T	p.His1517Leu	p.H1517L	ENST00000256646	NM_024408.3	1517	cAc/cTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49422940	49422940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	157	526	0	ENST00000301067.7:c.14155G>A	p.Ala4719Thr	p.A4719T	ENST00000301067	NM_003482.3	4719	Gcc/Acc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220494	1220506	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GCGTGGCCGAGGT	GCGTGGCCGAGGT	ATA			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	313	515	3	ENST00000326873.7:c.587_597+2delinsATA		p.X196_splice	ENST00000326873	NM_000455.4	196																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2222458	2222458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	293	439	2	ENST00000398665.3:c.3290C>T	p.Pro1097Leu	p.P1097L	ENST00000398665	NM_032482.2	1097	cCc/cTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272297	15272297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	335	563	0	ENST00000263388.2:c.6142G>A	p.Ala2048Thr	p.A2048T	ENST00000263388	NM_000435.2	2048	Gcc/Acc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753081	57753081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	123	357	0	ENST00000274289.3:c.935C>G	p.Ala312Gly	p.A312G	ENST00000274289	NM_006622.3	312	gCt/gGt																																																																														
RB1	5925	MSKCC	GRCh37	13	48937001	48937005	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAA	CAGAA	-			P-0030573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	149	450	1	ENST00000267163.4:c.772_776del	p.Asn258GlufsTer11	p.N258Efs*11	ENST00000267163	NM_000321.2	257	CAGAAc/c																																																																														
MCL1	4170	MSKCC	GRCh37	1	150551727	150551744	+	inframe_deletion	In_Frame_Del	DEL	CGGGGGTCGCGGTGACGT	CGGGGGTCGCGGTGACGT	-			P-0030573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	117	235	0	ENST00000369026.2:c.263_280del	p.Asp88_Pro93del	p.D88_P93del	ENST00000369026	NM_021960.4	88	gACGTCACCGCGACCCCCGcg/gcg																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41750406	41750406	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	84	437	0	ENST00000226382.2:c.222G>C	p.Gln74His	p.Q74H	ENST00000226382	NM_003924.3	74	caG/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578338	7578383	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGA	AGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGA	T			P-0030573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	492	465	0	ENST00000269305.4:c.547_559+33delinsA		p.X183_splice	ENST00000269305	NM_001126112.2	183																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	143	500	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	120	419	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	180	528	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
CDH1	999	MSKCC	GRCh37	16	68842595	68842595	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	186	500	0	ENST00000261769.5:c.532-1G>A		p.X178_splice	ENST00000261769	NM_004360.3	178																																																																															
FOXA1	3169	MSKCC	GRCh37	14	38061277	38061277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	185	475	0	ENST00000250448.2:c.712C>T	p.Pro238Ser	p.P238S	ENST00000250448	NM_004496.3	238	Ccg/Tcg																																																																														
MED12	9968	MSKCC	GRCh37	X	70340949	70340949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	152	569	0	ENST00000374080.3:c.682G>A	p.Val228Met	p.V228M	ENST00000374080		228	Gtg/Atg																																																																														
ATRX	546	MSKCC	GRCh37	X	76855281	76855281	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	101	388	0	ENST00000373344.5:c.5706del	p.Phe1902LeufsTer10	p.F1902Lfs*10	ENST00000373344	NM_000489.3	1902	ttT/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	194	469	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807537	1807537	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146672976		P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	182	549	0	ENST00000260795.2:c.1706C>T	p.Ala569Val	p.A569V	ENST00000260795		569	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	58	339	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	350	713	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176329	24176329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	193	645	0	ENST00000263121.7:c.1120C>T	p.Arg374Trp	p.R374W	ENST00000263121	NM_003073.3	374	Cgg/Tgg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50827561	50827561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	271	534	0	ENST00000398568.2:c.2446A>G	p.Thr816Ala	p.T816A	ENST00000398568	NM_001042412.1	816	Acc/Gcc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89347347	89347347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	78	773	0	ENST00000301030.4:c.5603C>A	p.Pro1868Gln	p.P1868Q	ENST00000301030	NM_001256183.1	1868	cCa/cAa																																																																														
APC	324	MSKCC	GRCh37	5	112173817	112173820	+	frameshift_variant	Frame_Shift_Del	DEL	TAGT	TAGT	-			P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	255	515	0	ENST00000257430.4:c.2527_2530del	p.Ser843LeufsTer17	p.S843Lfs*17	ENST00000257430	NM_000038.5	842	gaTAGT/ga																																																																														
STAG2	10735	MSKCC	GRCh37	X	123179114	123179114	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	261	310	0	ENST00000218089.9:c.563A>G	p.Tyr188Cys	p.Y188C	ENST00000218089	NM_001042749.1	188	tAt/tGt																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	76	493	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	73	466	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123239445	123239445	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	84	563	0	ENST00000358487.5:c.2392T>C	p.Phe798Leu	p.F798L	ENST00000358487	NM_000141.4	798	Ttt/Ctt																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646730	23646730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	95	575	0	ENST00000261584.4:c.1137G>T	p.Lys379Asn	p.K379N	ENST00000261584	NM_024675.3	379	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578445	7578445	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	80	557	0	ENST00000269305.4:c.485delT	p.Ile162ThrfsTer8	p.I162Tfs*8	ENST00000269305	NM_001126112.2	162	aTc/ac																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713304	30713305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	112	380	0	ENST00000359013.4:c.706dup	p.Glu236GlyfsTer13	p.E236Gfs*13	ENST00000359013	NM_001024847.2	235	atg/atGg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066490	94066490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	31	358	0	ENST00000369303.4:c.1269C>G	p.Asp423Glu	p.D423E	ENST00000369303	NM_004440.3	423	gaC/gaG																																																																														
PMS2	5395	MSKCC	GRCh37	7	6035234	6035234	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	46	402	0	ENST00000265849.7:c.834T>G	p.His278Gln	p.H278Q	ENST00000265849	NM_000535.5	278	caT/caG																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120457996	120457996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	68	448	1	ENST00000256646.2:c.7349G>T	p.Gly2450Val	p.G2450V	ENST00000256646	NM_024408.3	2450	gGa/gTa																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741883	17741883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	18	37	0	ENST00000250003.3:c.554C>A	p.Pro185His	p.P185H	ENST00000250003	NM_002478.4	185	cCc/cAc																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94169065	94169065	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	29	321	0	ENST00000323929.3:c.1927G>T	p.Val643Leu	p.V643L	ENST00000323929	NM_005591.3	643	Gtg/Ttg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28931779	28931779	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	100	371	1	ENST00000282397.4:c.2160A>T	p.Arg720Ser	p.R720S	ENST00000282397	NM_002019.4	720	agA/agT																																																																														
CTCF	10664	MSKCC	GRCh37	16	67663299	67663300	+	splice_acceptor_variant	Splice_Site	DNP	AG	AG	TT			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	67	379	0	ENST00000264010.4:c.1702-2_1702-1delinsTT		p.X568_splice	ENST00000264010	NM_006565.3	568																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	191	591	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
NF1	4763	MSKCC	GRCh37	17	29556993	29556993	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	22	149	0	ENST00000358273.4:c.2990+1G>A		p.X997_splice	ENST00000358273	NM_001042492.2	997																																																																															
NF1	4763	MSKCC	GRCh37	17	29663772	29663773	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	224	523	0	ENST00000358273.4:c.6269dup	p.Asn2091GlnfsTer5	p.N2091Qfs*5	ENST00000358273	NM_001042492.2	2089	-/T																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602289	10602289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	156	504	0	ENST00000171111.5:c.1289G>A	p.Gly430Asp	p.G430D	ENST00000171111	NM_203500.1	430	gGc/gAc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161988	47161988	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	52	369	0	ENST00000409792.3:c.4138A>T	p.Thr1380Ser	p.T1380S	ENST00000409792	NM_014159.6	1380	Act/Tct																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468192	50468192	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	52	496	0	ENST00000331340.3:c.1427T>A	p.Met476Lys	p.M476K	ENST00000331340	NM_006060.4	476	aTg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			602	94	710	2	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	19	398	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64571924	64571924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			889	110	945	0	ENST00000337652.1:c.1730C>T	p.Ser577Leu	p.S577L	ENST00000337652	NM_130803.2	577	tCg/tTg																																																																														
ETV6	2120	MSKCC	GRCh37	12	11992142	11992142	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	42	392	0	ENST00000396373.4:c.232T>A	p.Ser78Thr	p.S78T	ENST00000396373	NM_001987.4	78	Tct/Act																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440141	49440141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	77	580	0	ENST00000301067.7:c.4485C>A	p.Tyr1495Ter	p.Y1495*	ENST00000301067	NM_003482.3	1495	taC/taA																																																																														
TERT	7015	MSKCC	GRCh37	5	1293884	1293884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			864	103	891	0	ENST00000310581.5:c.1117C>G	p.Pro373Ala	p.P373A	ENST00000310581	NM_198253.2	373	Cca/Gca																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39002738	39002738	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	35	376	0	ENST00000357387.3:c.291del	p.Glu98LysfsTer24	p.E98Kfs*24	ENST00000357387	NM_152756.3	97	aaA/aa																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372273	55372273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	87	600	0	ENST00000297316.4:c.963C>A	p.His321Gln	p.H321Q	ENST00000297316	NM_022454.3	321	caC/caA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	138	545	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	557	751	3	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220439	1220439	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	622	912	1	ENST00000326873.7:c.532A>T	p.Lys178Ter	p.K178*	ENST00000326873	NM_000455.4	178	Aag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76938773	76938773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	139	729	1	ENST00000373344.5:c.1975G>A	p.Val659Ile	p.V659I	ENST00000373344	NM_000489.3	659	Gta/Ata																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120461055	120461055	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	131	484	0	ENST00000256646.2:c.5903C>G	p.Ala1968Gly	p.A1968G	ENST00000256646	NM_024408.3	1968	gCg/gGg																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602757	10602757	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	931	976	1	ENST00000171111.5:c.821A>C	p.His274Pro	p.H274P	ENST00000171111	NM_203500.1	274	cAc/cCc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300893	137300893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1275	246	893	1	ENST00000481739.1:c.538G>A	p.Asp180Asn	p.D180N	ENST00000481739	NM_002957.4	180	Gac/Aac																																																																														
STK11	6794	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	243	802	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88472621	88472621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	64	408	0	ENST00000360948.2:c.1934G>A	p.Arg645His	p.R645H	ENST00000360948	NM_001012338.2	645	cGc/cAc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78921012	78921032	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTCTTCCCTTAAGCTTTTG	TCTTCTTCCCTTAAGCTTTTG	-			P-0031233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	72	458	0	ENST00000306801.3:c.3141-15_3146del		p.X1047_splice	ENST00000306801	NM_020761.2	1047																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0031239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	125	509	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	195	612	2	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922363	178922363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	213	504	0	ENST00000263967.3:c.1132T>C	p.Cys378Arg	p.C378R	ENST00000263967	NM_006218.2	378	Tgt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0031239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	191	662	0	ENST00000269305.4:c.489C>G	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taG																																																																														
BCL2L1	598	MSKCC	GRCh37	20	30309736	30309736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	79	389	0	ENST00000307677.4:c.286G>A	p.Glu96Lys	p.E96K	ENST00000307677	NM_138578.1	96	Gag/Aag																																																																														
TOP1	7150	MSKCC	GRCh37	20	39750740	39750744	+	frameshift_variant	Frame_Shift_Del	DEL	ATTGC	ATTGC	-			P-0031239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	106	426	0	ENST00000361337.2:c.2140_2144del	p.Ile714ProfsTer12	p.I714Pfs*12	ENST00000361337	NM_003286.2	714	ATTGCc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	103	485	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	166	856	3	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713559	30713559	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	92	580	0	ENST00000359013.4:c.959C>G	p.Ser320Ter	p.S320*	ENST00000359013	NM_001024847.2	320	tCa/tGa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	106	541	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2129377	2129377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	138	709	0	ENST00000219476.3:c.3232C>T	p.Arg1078Trp	p.R1078W	ENST00000219476	NM_000548.3	1078	Cgg/Tgg																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87317275	87317275	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	141	525	0	ENST00000277120.3:c.300T>G	p.Asp100Glu	p.D100E	ENST00000277120		100	gaT/gaG																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120483254	120483254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	53	593	0	ENST00000256646.2:c.3107A>G	p.Asn1036Ser	p.N1036S	ENST00000256646	NM_024408.3	1036	aAt/aGt																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111118	193111118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	62	583	0	ENST00000367435.3:c.651G>T	p.Glu217Asp	p.E217D	ENST00000367435	NM_024529.4	217	gaG/gaT																																																																														
RET	5979	MSKCC	GRCh37	10	43609104	43609104	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	145	818	0	ENST00000355710.3:c.1860C>A	p.Cys620Ter	p.C620*	ENST00000355710	NM_020975.4	620	tgC/tgA																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118347657	118347657	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	114	621	1	ENST00000534358.1:c.3294G>A	p.Trp1098Ter	p.W1098*	ENST00000534358	NM_005933.3	1098	tgG/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	268	591	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
REL	5966	MSKCC	GRCh37	2	61149438	61149438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	47	532	0	ENST00000295025.8:c.1628G>T	p.Ser543Ile	p.S543I	ENST00000295025	NM_002908.2	543	aGt/aTt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134851595	134851595	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	61	647	0	ENST00000398015.3:c.1001A>T	p.Asn334Ile	p.N334I	ENST00000398015	NM_004441.4	334	aAt/aTt																																																																														
ATR	545	MSKCC	GRCh37	3	142279177	142279177	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	63	730	0	ENST00000350721.4:c.1469T>C	p.Leu490Ser	p.L490S	ENST00000350721	NM_001184.3	490	tTa/tCa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526390	31526390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	170	974	1	ENST00000344624.3:c.650G>T	p.Ser217Ile	p.S217I	ENST00000344624		217	aGt/aTt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946195	13946195	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	231	635	0	ENST00000405192.2:c.901C>G	p.Arg301Gly	p.R301G	ENST00000405192	NM_001163147.1	301	Cgg/Ggg																																																																														
NBN	4683	MSKCC	GRCh37	8	90971011	90971011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	47	545	0	ENST00000265433.3:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000265433	NM_002485.4	356	Gcc/Acc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410915	63410915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	59	758	0	ENST00000330258.3:c.2252C>A	p.Pro751His	p.P751H	ENST00000330258	NM_152424.3	751	cCt/cAt																																																																														
BTK	695	MSKCC	GRCh37	X	100625028	100625028	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	119	738	2	ENST00000308731.7:c.349A>T	p.Thr117Ser	p.T117S	ENST00000308731	NM_000061.2	117	Act/Tct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	461	520	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44935940	44935940	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	67	242	0	ENST00000377967.4:c.2703-2A>G		p.X901_splice	ENST00000377967	NM_021140.2	901																																																																															
SPEN	23013	MSKCC	GRCh37	1	16255882	16255883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	243	332	0	ENST00000375759.3:c.3154dup	p.Ile1052AsnfsTer7	p.I1052Nfs*7	ENST00000375759	NM_015001.2	1049	-/A																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44949978	44949978	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	84	319	0	ENST00000377967.4:c.3747T>A	p.Tyr1249Ter	p.Y1249*	ENST00000377967	NM_021140.2	1249	taT/taA																																																																														
MTOR	2475	MSKCC	GRCh37	1	11269392	11269392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	265	428	0	ENST00000361445.4:c.3778G>A	p.Val1260Ile	p.V1260I	ENST00000361445	NM_004958.3	1260	Gtc/Atc																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254839	16254839	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	160	323	0	ENST00000375759.3:c.2104C>T	p.Arg702Ter	p.R702*	ENST00000375759	NM_015001.2	702	Cga/Tga																																																																														
MPL	4352	MSKCC	GRCh37	1	43804359	43804359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	295	312	1	ENST00000372470.3:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000372470	NM_005373.2	120	cGg/cAg																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120461980	120461980	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	236	400	0	ENST00000256646.2:c.5736T>A	p.Cys1912Ter	p.C1912*	ENST00000256646	NM_024408.3	1912	tgT/tgA																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518503	204518503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	125	263	0	ENST00000367182.3:c.1166G>A	p.Cys389Tyr	p.C389Y	ENST00000367182	NM_001278516.1	389	tGc/tAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100420	8100420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	278	499	1	ENST00000346208.3:c.394G>A	p.Val132Ile	p.V132I	ENST00000346208		132	Gtc/Atc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63845561	63845565	+	frameshift_variant	Frame_Shift_Del	DEL	AACAA	AACAA	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	90	139	0	ENST00000279873.7:c.1307_1311del	p.Thr436SerfsTer10	p.T436Sfs*10	ENST00000279873	NM_032199.2	434	AACAAa/a																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	134	231	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	180	393	1	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																														
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	111	179	2	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690828	89690828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202004587		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	19	199	0	ENST00000371953.3:c.235G>A	p.Ala79Thr	p.A79T	ENST00000371953	NM_000314.4	79	Gcc/Acc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	297	333	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																														
HRAS	3265	MSKCC	GRCh37	11	532700	532700	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142218590		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	396	549	0	ENST00000311189.7:c.506G>A	p.Arg169Gln	p.R169Q	ENST00000311189		169	cGg/cAg																																																																														
MYOD1	4654	MSKCC	GRCh37	11	17741936	17741936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	126	140	0	ENST00000250003.3:c.607C>T	p.Arg203Cys	p.R203C	ENST00000250003	NM_002478.4	203	Cgc/Tgc																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205157	61205157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144867876		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	200	480	0	ENST00000301761.2:c.97C>T	p.Arg33Cys	p.R33C	ENST00000301761	NM_017841.2	33	Cgc/Tgc																																																																														
CCND1	595	MSKCC	GRCh37	11	69458660	69458660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	208	260	0	ENST00000227507.2:c.475G>A	p.Asp159Asn	p.D159N	ENST00000227507	NM_053056.2	159	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424970	49424970	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783691		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	387	495	0	ENST00000301067.7:c.13518del	p.Ser4507AlafsTer12	p.S4507Afs*12	ENST00000301067	NM_003482.3	4506	ccC/cc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112388	115112388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	206	335	0	ENST00000257566.3:c.1352C>T	p.Ala451Val	p.A451V	ENST00000257566	NM_016569.3	451	gCg/gTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	98	140	0	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																																																														
MAX	4149	MSKCC	GRCh37	14	65560464	65560465	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	279	311	0	ENST00000358664.4:c.132_133del	p.His44GlnfsTer42	p.H44Qfs*42	ENST00000358664	NM_002382.4	44	caCAgt/cagt																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562799	95562799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	181	347	0	ENST00000343455.3:c.4458delA	p.Lys1486AsnfsTer4	p.K1486Nfs*4	ENST00000343455	NM_177438.2	1486	aaA/aa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95569817	95569817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	107	233	0	ENST00000343455.3:c.3916G>A	p.Ala1306Thr	p.A1306T	ENST00000343455	NM_177438.2	1306	Gct/Act																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67482869	67482869	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	216	292	0	ENST00000327367.4:c.1273T>C	p.Ser425Pro	p.S425P	ENST00000327367	NM_005902.3	425	Tct/Cct																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	172	332	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3641103	3641103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	543	767	0	ENST00000294008.3:c.2536G>T	p.Val846Leu	p.V846L	ENST00000294008	NM_032444.2	846	Gtg/Ttg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	203	343	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3841994	3841994	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	179	245	2	ENST00000262367.5:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000262367	NM_004380.2	440	Cga/Tga																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	168	361	0	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	240	453	0	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	150	350	1	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	394	454	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	214	321	8	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37883642	37883642	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	373	517	0	ENST00000269571.5:c.3254T>C	p.Val1085Ala	p.V1085A	ENST00000269571		1085	gTa/gCa																																																																														
EZH1	2145	MSKCC	GRCh37	17	40865346	40865346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	320	388	1	ENST00000428826.2:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000428826		362	cGg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	548	494	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	200	262	0	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440643	56440643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	338	403	0	ENST00000407977.2:c.575del	p.Pro192ArgfsTer11	p.P192Rfs*11	ENST00000407977		192	cCg/cg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	258	388	1	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	30	36	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78896542	78896542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	374	515	0	ENST00000306801.3:c.2539C>T	p.Pro847Ser	p.P847S	ENST00000306801	NM_020761.2	847	Ccg/Tcg																																																																														
TCF3	6929	MSKCC	GRCh37	19	1621908	1621910	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	329	548	1	ENST00000344749.5:c.882_884delCTC	p.Ser295del	p.S295del	ENST00000344749	NM_001136139.2	294	tcCTCa/tca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	322	594	1	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	101	646	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																														
ERF	2077	MSKCC	GRCh37	19	42753728	42753728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	337	562	1	ENST00000222329.4:c.536G>A	p.Arg179His	p.R179H	ENST00000222329	NM_006494.2	179	cGc/cAc																																																																														
CIC	23152	MSKCC	GRCh37	19	42791282	42791282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	314	464	0	ENST00000575354.2:c.346del	p.Val116TrpfsTer89	p.V116Wfs*89	ENST00000575354	NM_015125.3	114	ttG/tt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919865	50919866	+	splice_acceptor_variant	Splice_Site	INS	-	-	G	rs756872503		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	261	468	1	ENST00000440232.2:c.2959dup		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
PPP2R1A	5518	MSKCC	GRCh37	19	52714552	52714552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	221	405	0	ENST00000322088.6:c.310G>A	p.Val104Met	p.V104M	ENST00000322088	NM_014225.5	104	Gtg/Atg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25967180	25967180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	210	320	0	ENST00000435504.4:c.2026G>A	p.Ala676Thr	p.A676T	ENST00000435504		676	Gct/Act																																																																														
XPO1	7514	MSKCC	GRCh37	2	61720105	61720105	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	225	271	0	ENST00000401558.2:c.1329A>T	p.Glu443Asp	p.E443D	ENST00000401558	NM_003400.3	443	gaA/gaT																																																																														
CASP8	841	MSKCC	GRCh37	2	202149734	202149734	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	298	432	0	ENST00000358485.4:c.1175T>A	p.Ile392Asn	p.I392N	ENST00000358485	NM_001080125.1	392	aTc/aAc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242793362	242793362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137861407		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	376	529	0	ENST00000334409.5:c.715G>A	p.Val239Met	p.V239M	ENST00000334409	NM_005018.2	239	Gtg/Atg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	62	209	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713414	40713414	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	261	418	0	ENST00000373198.4:c.4101del	p.Ser1368ProfsTer31	p.S1368Pfs*31	ENST00000373198	NM_133170.3	1367	ccC/cc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	187	370	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																														
ERG	2078	MSKCC	GRCh37	21	39775477	39775477	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	311	397	0	ENST00000288319.7:c.543del	p.Ser182AlafsTer22	p.S182Afs*22	ENST00000288319	NM_182918.3	181	ccC/cc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45655272	45655272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	399	519	0	ENST00000407780.3:c.580C>T	p.Arg194Trp	p.R194W	ENST00000407780	NM_001283052.1	194	Cgg/Tgg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	332	230	8	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																														
MLH1	4292	MSKCC	GRCh37	3	37053348	37053348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	36	309	0	ENST00000231790.2:c.588delA	p.Lys196AsnfsTer6	p.K196Nfs*6	ENST00000231790	NM_000249.3	195	Aaa/aa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47143009	47143010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	214	215	0	ENST00000409792.3:c.4953dup	p.Thr1652TyrfsTer14	p.T1652Yfs*14	ENST00000409792	NM_014159.6	1651	-/T																																																																														
SETD2	29072	MSKCC	GRCh37	3	47165636	47165636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	280	415	0	ENST00000409792.3:c.490G>A	p.Ala164Thr	p.A164T	ENST00000409792	NM_014159.6	164	Gca/Aca																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119582302	119582302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	191	244	1	ENST00000316626.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000316626		367	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134885834	134885834	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	184	286	0	ENST00000398015.3:c.1745A>G	p.Tyr582Cys	p.Y582C	ENST00000398015	NM_004441.4	582	tAc/tGc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474610	138474610	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	38	301	0	ENST00000289153.2:c.383T>G	p.Val128Gly	p.V128G	ENST00000289153	NM_006219.2	128	gTc/gGc																																																																														
DCUN1D1	54165	MSKCC	GRCh37	3	182662919	182662919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	236	350	0	ENST00000292782.4:c.743G>A	p.Arg248His	p.R248H	ENST00000292782	NM_020640.2	248	cGc/cAc																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41747967	41747967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	82	87	0	ENST00000226382.2:c.802G>T	p.Gly268Cys	p.G268C	ENST00000226382	NM_003924.3	268	Ggc/Tgc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244151	153244151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	301	342	0	ENST00000281708.4:c.2006G>T	p.Gly669Val	p.G669V	ENST00000281708	NM_033632.3	669	gGg/gTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	239	253	0	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541928	187541928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	301	370	0	ENST00000441802.2:c.5812G>A	p.Val1938Ile	p.V1938I	ENST00000441802	NM_005245.3	1938	Gtc/Atc																																																																														
SDHA	6389	MSKCC	GRCh37	5	224527	224527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	196	213	0	ENST00000264932.6:c.203G>A	p.Gly68Asp	p.G68D	ENST00000264932	NM_004168.2	68	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294577	1294577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	231	238	0	ENST00000310581.5:c.424C>T	p.Arg142Cys	p.R142C	ENST00000310581	NM_198253.2	142	Cgc/Tgc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38958801	38958801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	78	206	0	ENST00000357387.3:c.2311C>A	p.Leu771Ile	p.L771I	ENST00000357387	NM_152756.3	771	Ctt/Att																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	304	294	7	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67576819	67576819	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	138	254	0	ENST00000274335.5:c.901C>T	p.Arg301Ter	p.R301*	ENST00000274335		301	Cga/Tga																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	296	302	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180047927	180047927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	303	590	0	ENST00000261937.6:c.2248G>A	p.Val750Met	p.V750M	ENST00000261937	NM_182925.4	750	Gtg/Atg																																																																														
FLT4	2324	MSKCC	GRCh37	5	180048560	180048560	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	309	509	0	ENST00000261937.6:c.2002A>T	p.Lys668Ter	p.K668*	ENST00000261937	NM_182925.4	668	Aag/Tag																																																																														
E2F3	1871	MSKCC	GRCh37	6	20402540	20402540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	209	232	0	ENST00000346618.3:c.77C>T	p.Ala26Val	p.A26V	ENST00000346618	NM_001949.4	26	gCc/gTc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32166743	32166743	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	364	561	2	ENST00000375023.3:c.4495C>T	p.Arg1499Ter	p.R1499*	ENST00000375023	NM_004557.3	1499	Cga/Tga																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521957	157521957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	158	291	0	ENST00000346085.5:c.4229C>T	p.Ser1410Phe	p.S1410F	ENST00000346085	NM_020732.3	1410	tCc/tTc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2956939	2956939	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	258	303	1	ENST00000396946.4:c.2688del	p.Phe896LeufsTer18	p.F896Lfs*18	ENST00000396946	NM_032415.4	896	ttT/tt																																																																														
HGF	3082	MSKCC	GRCh37	7	81392132	81392132	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	140	211	0	ENST00000222390.5:c.145A>G	p.Thr49Ala	p.T49A	ENST00000222390	NM_000601.4	49	Acc/Gcc																																																																														
MET	4233	MSKCC	GRCh37	7	116422053	116422053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	175	232	0	ENST00000397752.3:c.3537del	p.Asp1180IlefsTer9	p.D1180Ifs*9	ENST00000397752	NM_000245.2	1178	gtA/gt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	186	220	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38187195	38187195	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	430	608	0	ENST00000317025.8:c.1282A>G	p.Thr428Ala	p.T428A	ENST00000317025	NM_023034.1	428	Act/Gct																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	252	356	1	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87359975	87359975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	109	154	0	ENST00000277120.3:c.1283G>A	p.Arg428Gln	p.R428Q	ENST00000277120		428	cGg/cAg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98232166	98232166	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	150	234	0	ENST00000331920.6:c.1776del	p.Pro593LeufsTer30	p.P593Lfs*30	ENST00000331920	NM_000264.3	592	ttT/tt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137321073	137321073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	201	361	1	ENST00000481739.1:c.1030G>A	p.Ala344Thr	p.A344T	ENST00000481739	NM_002957.4	344	Gcc/Acc																																																																														
BTK	695	MSKCC	GRCh37	X	100615679	100615679	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	364	445	4	ENST00000308731.7:c.653del	p.Lys218ArgfsTer11	p.K218Rfs*11	ENST00000308731	NM_000061.2	218	aAg/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	245	522	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NF1	4763	MSKCC	GRCh37	17	29553590	29553591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTGAGGAAGCAGA			P-0032065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	65	233	0	ENST00000358273.4:c.2141_2154dup	p.Ile719ValfsTer34	p.I719Vfs*34	ENST00000358273	NM_001042492.2	713	-/TGTGAGGAAGCAGA																																																																														
TCF3	6929	MSKCC	GRCh37	19	1622018	1622143	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCGCCCACCCCCTGCCCCCTGCCCTGGGTCCTACCATACGCTCGTGCTGGTGCAGGCCACCAAACGTGCTGCTGCTTCCACTGCTGCCCACCGGGCCGCTACCGGGCGGGAGGGGCAGCGGGGAT	TCCGCCCACCCCCTGCCCCCTGCCCTGGGTCCTACCATACGCTCGTGCTGGTGCAGGCCACCAAACGTGCTGCTGCTTCCACTGCTGCCCACCGGGCCGCTACCGGGCGGGAGGGGCAGCGGGGAT	-			P-0032065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	166	536	2	ENST00000344749.5:c.732_822+35del		p.X244_splice	ENST00000344749	NM_001136139.2	244																																																																															
IRS1	3667	MSKCC	GRCh37	2	227660637	227660637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	197	476	1	ENST00000305123.5:c.2818G>A	p.Glu940Lys	p.E940K	ENST00000305123	NM_005544.2	940	Gag/Aag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527327	157527330	+	protein_altering_variant	In_Frame_Del	DEL	CGAG	CGAG	T			P-0032065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	144	333	1	ENST00000346085.5:c.5052_5055delinsT	p.Glu1685del	p.E1685del	ENST00000346085	NM_020732.3	1684	gtCGAG/gtT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	292	523	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8106094	8106094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	92	317	0	ENST00000346208.3:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000346208		305	cGa/cAa																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0032066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	13	234	1	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg																																																																														
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	52	157	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30648405	30648405	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	115	359	0	ENST00000359013.4:c.30G>A	p.Trp10Ter	p.W10*	ENST00000359013	NM_001024847.2	10	tgG/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112136974	112136975	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0032066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	82	209	0	ENST00000257430.4:c.730_731del		p.X244_splice	ENST00000257430	NM_000038.5	244																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3795193	3795288	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATGAATGAGATGCAGTAGCCACTGCAACTGCCCCGCCACTGGCTCTGTGCAGAACTGCCCTCCAGGCCAGGGGAAACAACTCACCCTGAAGGCCA	AATGAATGAGATGCAGTAGCCACTGCAACTGCCCCGCCACTGGCTCTGTGCAGAACTGCCCTCCAGGCCAGGGGAAACAACTCACCCTGAAGGCCA	-			P-0032066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	44	132	0	ENST00000262367.5:c.3904_3914+85del		p.X1302_splice	ENST00000262367	NM_004380.2	1302																																																																															
DNMT3B	1789	MSKCC	GRCh37	20	31385029	31385029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	130	560	0	ENST00000328111.2:c.1414G>A	p.Asp472Asn	p.D472N	ENST00000328111	NM_006892.3	472	Gat/Aat																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190344	32190344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	247	500	0	ENST00000375023.3:c.395G>T	p.Arg132Leu	p.R132L	ENST00000375023	NM_004557.3	132	cGc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	160	518	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	92	360	1	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																														
B2M	567	MSKCC	GRCh37	15	45007818	45007818	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	49	357	0	ENST00000558401.1:c.265G>T	p.Glu89Ter	p.E89*	ENST00000558401	NM_004048.2	89	Gaa/Taa																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9784944	9784960	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCAGGCCTGCCTGA	GCGGCAGGCCTGCCTGA	-			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	130	585	0	ENST00000377346.4:c.2949_2965del	p.Ala984GlnfsTer31	p.A984Qfs*31	ENST00000377346	NM_005026.3	983	GCGGCAGGCCTGCCTGAg/g																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36939081	36939081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	76	610	1	ENST00000361632.4:c.628G>T	p.Gly210Trp	p.G210W	ENST00000361632		210	Ggg/Tgg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14015946	14015946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	42	229	0	ENST00000311895.7:c.266C>A	p.Thr89Lys	p.T89K	ENST00000311895	NM_005236.2	89	aCa/aAa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15281355	15281355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	51	470	0	ENST00000263388.2:c.4901T>C	p.Leu1634Pro	p.L1634P	ENST00000263388	NM_000435.2	1634	cTg/cCg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29099525	29099525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	74	251	0	ENST00000328354.6:c.876del	p.Phe292LeufsTer12	p.F292Lfs*12	ENST00000328354	NM_007194.3	292	ttT/tt																																																																														
EP300	2033	MSKCC	GRCh37	22	41513561	41513561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	93	426	0	ENST00000263253.7:c.465C>G	p.Asn155Lys	p.N155K	ENST00000263253	NM_001429.3	155	aaC/aaG																																																																														
PHOX2B	8929	MSKCC	GRCh37	4	41748122	41748133	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCCT	CCGCCGCCGCCT	-			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	77	148	0	ENST00000226382.2:c.636_647del	p.Gly214_Gly217del	p.G214_G217del	ENST00000226382	NM_003924.3	212	ggAGGCGGCGGCGGc/ggc																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249407	110249407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	247	816	0	ENST00000374672.4:c.1166C>T	p.Pro389Leu	p.P389L	ENST00000374672	NM_004235.4	389	cCc/cTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864184	57864189	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTCA	CTGTCA	T			P-0032067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	108	460	0	ENST00000228682.2:c.1661_1666delinsT	p.Thr554MetfsTer86	p.T554Mfs*86	ENST00000228682	NM_005269.2	554	aCTGTCAgc/aTgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0032070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	128	596	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0032070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	97	270	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	42	453	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18699293	18699293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	49	337	1	ENST00000266497.5:c.3394C>A	p.Gln1132Lys	p.Q1132K	ENST00000266497		1132	Caa/Aaa																																																																														
MDM2	4193	MSKCC	GRCh37	12	69218339	69218339	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	47	403	0	ENST00000462284.1:c.431T>A	p.Leu144His	p.L144H	ENST00000462284	NM_002392.5	144	cTt/cAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026150	48026150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	63	332	0	ENST00000234420.5:c.1028C>A	p.Pro343His	p.P343H	ENST00000234420	NM_000179.2	343	cCt/cAt																																																																														
VHL	7428	MSKCC	GRCh37	3	10183755	10183757	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0032072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	32	576	0	ENST00000256474.2:c.227_229delTCT	p.Phe76del	p.F76del	ENST00000256474	NM_000551.3	75	aTCTtc/atc																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30068256	30068256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	30	373	1	ENST00000331968.5:c.2143G>A	p.Ala715Thr	p.A715T	ENST00000331968	NM_002742.2	715	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032076-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	71	442	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221992	1221992	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032076-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	120	537	0	ENST00000326873.7:c.907A>T	p.Ile303Phe	p.I303F	ENST00000326873	NM_000455.4	303	Atc/Ttc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661790	227661790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032076-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			678	70	765	0	ENST00000305123.5:c.1665G>T	p.Met555Ile	p.M555I	ENST00000305123	NM_005544.2	555	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	32	377	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0032078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	32	137	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0032078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	32	137	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522188	157522188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	46	457	1	ENST00000346085.5:c.4460C>T	p.Ala1487Val	p.A1487V	ENST00000346085	NM_020732.3	1487	gCg/gTg																																																																														
CDC73	79577	MSKCC	GRCh37	1	193202184	193202184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	19	296	0	ENST00000367435.3:c.1216C>G	p.Gln406Glu	p.Q406E	ENST00000367435	NM_024529.4	406	Caa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577125	7577126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	99	561	0	ENST00000269305.4:c.812dup	p.Val272GlyfsTer34	p.V272Gfs*34	ENST00000269305	NM_001126112.2	271	gag/gaAg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028668	12028668	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	41	360	0	ENST00000353533.5:c.871T>A	p.Trp291Arg	p.W291R	ENST00000353533	NM_003010.3	291	Tgg/Agg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	62	292	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	41	253	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577082	7577085	+	missense_variant	Missense_Mutation	ONP	CCTC	CCTC	TCTT			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	156	642	0	ENST00000269305.4:c.853_856delinsAAGA	p.Glu285_Glu286delinsLysLys	p.E285_E286delinsKK	ENST00000269305	NM_001126112.2	285	GAGGaa/AAGAaa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9546761	9546761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	39	254	0	ENST00000353224.5:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000353224	NM_177990.2	421	Gac/Aac																																																																														
TP63	8626	MSKCC	GRCh37	3	189612176	189612176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	73	446	0	ENST00000264731.3:c.1928G>A	p.Arg643Gln	p.R643Q	ENST00000264731	NM_003722.4	643	cGa/cAa																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94066711	94066711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	85	431	0	ENST00000369303.4:c.1048G>A	p.Glu350Lys	p.E350K	ENST00000369303	NM_004440.3	350	Gaa/Aaa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258117	123258117	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	61	369	0	ENST00000358487.5:c.1564G>A	p.Asp522Asn	p.D522N	ENST00000358487	NM_000141.4	522	Gat/Aat																																																																														
SPEN	23013	MSKCC	GRCh37	1	16264485	16264485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	88	434	0	ENST00000375759.3:c.10688T>C	p.Val3563Ala	p.V3563A	ENST00000375759	NM_015001.2	3563	gTt/gCt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864639	57864639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	131	635	0	ENST00000228682.2:c.2116G>A	p.Glu706Lys	p.E706K	ENST00000228682	NM_005269.2	706	Gag/Aag																																																																														
MGA	23269	MSKCC	GRCh37	15	42034806	42034806	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	73	424	0	ENST00000219905.7:c.4648C>T	p.Gln1550Ter	p.Q1550*	ENST00000219905	NM_001164273.1	1550	Cag/Tag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25973155	25973155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	55	376	0	ENST00000435504.4:c.1270C>A	p.Pro424Thr	p.P424T	ENST00000435504		424	Cca/Aca																																																																														
PPARG	5468	MSKCC	GRCh37	3	12447431	12447431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	88	437	1	ENST00000287820.6:c.670G>A	p.Glu224Lys	p.E224K	ENST00000287820	NM_015869.4	224	Gag/Aag																																																																														
GSK3B	2932	MSKCC	GRCh37	3	119642255	119642255	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	79	461	0	ENST00000316626.5:c.442C>T	p.Arg148Ter	p.R148*	ENST00000316626		148	Cga/Tga																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417876	138417876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	69	440	1	ENST00000289153.2:c.1643C>T	p.Ser548Phe	p.S548F	ENST00000289153	NM_006219.2	548	tCt/tTt																																																																														
TP63	8626	MSKCC	GRCh37	3	189456486	189456486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	83	402	0	ENST00000264731.3:c.247G>A	p.Asp83Asn	p.D83N	ENST00000264731	NM_003722.4	83	Gat/Aat																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965749	93965749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	26	227	0	ENST00000369303.4:c.2179G>A	p.Asp727Asn	p.D727N	ENST00000369303	NM_004440.3	727	Gat/Aat																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528451	157528451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	77	452	1	ENST00000346085.5:c.6176C>T	p.Pro2059Leu	p.P2059L	ENST00000346085	NM_020732.3	2059	cCg/cTg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528692	8528692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	62	328	0	ENST00000356435.5:c.440G>T	p.Cys147Phe	p.C147F	ENST00000356435		147	tGt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21968233	21968234	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	57	262	0	ENST00000304494.5:c.464_465dup	p.Asp156ProfsTer38	p.D156Pfs*38	ENST00000304494	NM_000077.4	155	-/CC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21968233	21968234	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	57	262	0	ENST00000304494.5:c.464_465dup	p.Asp156ProfsTer38	p.D156Pfs*38	ENST00000304494	NM_000077.4	155	-/CC																																																																														
MED12	9968	MSKCC	GRCh37	X	70349571	70349571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	114	216	0	ENST00000374080.3:c.3733G>A	p.Gly1245Arg	p.G1245R	ENST00000374080		1245	Gga/Aga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37618667	37618667	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	73	409	0	ENST00000447079.4:c.343C>T	p.Gln115Ter	p.Q115*	ENST00000447079	NM_015083.1	115	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	408	677	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	211	570	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112163701	112163701	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0032106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	250	303	0	ENST00000257430.4:c.1624C>T	p.Gln542Ter	p.Q542*	ENST00000257430	NM_000038.5	542	Cag/Tag																																																																														
JUN	3725	MSKCC	GRCh37	1	59248655	59248656	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	374	795	1	ENST00000371222.2:c.87dup	p.Asn30Ter	p.N30*	ENST00000371222	NM_002228.3	29	-/T																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457246	67457246	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	47	631	0	ENST00000327367.4:c.220C>G	p.Arg74Gly	p.R74G	ENST00000327367	NM_005902.3	74	Cgg/Ggg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143130117	143130117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	190	652	0	ENST00000262992.4:c.899T>G	p.Val300Gly	p.V300G	ENST00000262992	NM_001101669.1	300	gTc/gGc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139814908	139814908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	380	630	1	ENST00000247668.2:c.901G>A	p.Glu301Lys	p.E301K	ENST00000247668	NM_021138.3	301	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0032109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	181	688	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7579718	7579718	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	184	687	0	ENST00000269305.4:c.78delT	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	26	ctT/ct																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52716025	52716025	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	174	666	0	ENST00000322088.6:c.590A>T	p.Glu197Val	p.E197V	ENST00000322088	NM_014225.5	197	gAg/gTg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30713522	30713522	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	145	562	0	ENST00000359013.4:c.922G>T	p.Glu308Ter	p.E308*	ENST00000359013	NM_001024847.2	308	Gag/Tag																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625438	69625438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5349	305	683	0	ENST00000334134.2:c.355G>A	p.Glu119Lys	p.E119K	ENST00000334134	NM_005247.2	119	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	401	668	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																														
FANCA	2175	MSKCC	GRCh37	16	89846317	89846317	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	175	634	0	ENST00000389301.3:c.1675G>C	p.Glu559Gln	p.E559Q	ENST00000389301	NM_000135.2	559	Gag/Cag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49416500	49416500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	442	646	0	ENST00000301067.7:c.16211C>T	p.Ser5404Phe	p.S5404F	ENST00000301067	NM_003482.3	5404	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440058	49440058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	365	656	0	ENST00000301067.7:c.4568G>A	p.Cys1523Tyr	p.C1523Y	ENST00000301067	NM_003482.3	1523	tGc/tAc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857892	9857892	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	369	667	0	ENST00000330684.3:c.3509A>T	p.Asn1170Ile	p.N1170I	ENST00000330684	NM_001134407.1	1170	aAc/aTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18965767	18965767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1489	85	670	1	ENST00000262803.5:c.1345G>A	p.Glu449Lys	p.E449K	ENST00000262803	NM_002911.3	449	Gag/Aag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096569	178096569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	102	404	0	ENST00000397062.3:c.762C>A	p.Phe254Leu	p.F254L	ENST00000397062	NM_006164.4	254	ttC/ttA																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129466	152129466	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	233	321	0	ENST00000206249.3:c.419C>G	p.Thr140Arg	p.T140R	ENST00000206249	NM_000125.3	140	aCg/aGg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808936	3808939	+	frameshift_variant	Frame_Shift_Ins	INS	TGGC	TGGC	ATCATGCCA			P-0032111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	311	608	0	ENST00000262367.5:c.3285_3288delinsTGGCATGAT	p.Met1095IlefsTer6	p.M1095Ifs*6	ENST00000262367	NM_004380.2	1095	atGCCA/atTGGCATGAT																																																																														
TNFRSF14	8764	MSKCC	GRCh37	1	2494665	2494665	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	63	543	0	ENST00000355716.4:c.805G>C	p.Val269Leu	p.V269L	ENST00000355716	NM_003820.2	269	Gtg/Ctg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115252204	115252204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	79	360	0	ENST00000369535.4:c.436G>T	p.Ala146Ser	p.A146S	ENST00000369535	NM_002524.4	146	Gcc/Tcc																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115261293	115261293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	41	500	0	ENST00000438362.2:c.2428G>T	p.Asp810Tyr	p.D810Y	ENST00000438362	NM_001242891.1	810	Gat/Tat																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246518396	246518396	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	129	399	0	ENST00000388985.4:c.165del	p.Lys56ArgfsTer4	p.K56Rfs*4	ENST00000388985		55	ggG/gg																																																																														
RET	5979	MSKCC	GRCh37	10	43607639	43607639	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	83	745	0	ENST00000355710.3:c.1615G>C	p.Gly539Arg	p.G539R	ENST00000355710	NM_020975.4	539	Ggc/Cgc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263928	104263928	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	17	176	0	ENST00000369902.3:c.19A>G	p.Ser7Gly	p.S7G	ENST00000369902	NM_016169.3	7	Agc/Ggc																																																																														
IGF2	3481	MSKCC	GRCh37	11	2154769	2154769	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	64	589	0	ENST00000434045.2:c.452C>A	p.Ser151Ter	p.S151*	ENST00000434045	NM_001127598.1	151	tCg/tAg																																																																														
ATM	472	MSKCC	GRCh37	11	108235809	108235809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	32	323	0	ENST00000278616.4:c.8851G>A	p.Val2951Ile	p.V2951I	ENST00000278616	NM_000051.3	2951	Gtc/Atc																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18446861	18446861	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	56	202	0	ENST00000266497.5:c.946del	p.Ala316GlnfsTer19	p.A316Qfs*19	ENST00000266497		316	Gca/ca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491415	18491415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	34	162	0	ENST00000266497.5:c.1328G>T	p.Cys443Phe	p.C443F	ENST00000266497		443	tGt/tTt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88678503	88678503	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	28	456	0	ENST00000360948.2:c.1033T>G	p.Ser345Ala	p.S345A	ENST00000360948	NM_001012338.2	345	Tcc/Gcc																																																																														
NF1	4763	MSKCC	GRCh37	17	29592246	29592246	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	36	99	0	ENST00000358273.4:c.4725-1G>T		p.X1575_splice	ENST00000358273	NM_001042492.2	1575																																																																															
BRIP1	83990	MSKCC	GRCh37	17	59861709	59861709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	118	212	0	ENST00000259008.2:c.1550C>T	p.Pro517Leu	p.P517L	ENST00000259008	NM_032043.2	517	cCt/cTt																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10283839	10283839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	49	469	0	ENST00000340748.4:c.647C>T	p.Pro216Leu	p.P216L	ENST00000340748		216	cCg/cTg																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46611660	46611660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	92	695	0	ENST00000263734.3:c.2474G>T	p.Arg825Leu	p.R825L	ENST00000263734	NM_001430.4	825	cGg/cTg																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99155430	99155430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	32	369	0	ENST00000074304.5:c.656C>G	p.Thr219Ser	p.T219S	ENST00000074304	NM_001134224.1	219	aCt/aGt																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128047336	128047337	+	missense_variant	Missense_Mutation	DNP	CT	CT	TC			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	87	487	1	ENST00000285398.2:c.585_586delinsGA	p.Glu196Lys	p.E196K	ENST00000285398	NM_000122.1	195	cgAGaa/cgGAaa																																																																														
PAK7	57144	MSKCC	GRCh37	20	9523308	9523308	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	55	499	1	ENST00000353224.5:c.1929C>A	p.Tyr643Ter	p.Y643*	ENST00000353224	NM_177990.2	643	taC/taA																																																																														
EP300	2033	MSKCC	GRCh37	22	41527599	41527600	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	27	415	0	ENST00000263253.7:c.1490_1491delinsTT	p.Gly497Val	p.G497V	ENST00000263253	NM_001429.3	497	gGG/gTT																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645698	12645700	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	33	304	0	ENST00000251849.4:c.769_771del	p.Ser257del	p.S257del	ENST00000251849	NM_002880.3	257	TCG/-																																																																														
ATR	545	MSKCC	GRCh37	3	142281380	142281380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	66	485	0	ENST00000350721.4:c.864G>T	p.Leu288Phe	p.L288F	ENST00000350721	NM_001184.3	288	ttG/ttT																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430971	181430971	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	72	556	0	ENST00000325404.1:c.823A>C	p.Ser275Arg	p.S275R	ENST00000325404	NM_003106.3	275	Agc/Cgc																																																																														
EIF4E	1977	MSKCC	GRCh37	4	99823030	99823030	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	25	365	0	ENST00000280892.6:c.182A>T	p.Asn61Ile	p.N61I	ENST00000280892	NM_001130678.1	61	aAc/aTc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47034492	47034492	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	74	276	0	ENST00000329236.7:c.345+1G>T		p.X115_splice	ENST00000329236	NM_001204466.1	115																																																																															
STAG2	10735	MSKCC	GRCh37	X	123195080	123195080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	62	195	0	ENST00000218089.9:c.1423G>A	p.Glu475Lys	p.E475K	ENST00000218089	NM_001042749.1	475	Gag/Aag																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	97	549	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	116	545	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																														
RUNX1	861	MSKCC	GRCh37	21	36164805	36164805	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	98	718	1	ENST00000300305.3:c.1070delC	p.Pro357ArgfsTer237	p.P357Rfs*237	ENST00000300305		357	cCg/cg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	188	633	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106732	27106732	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	90	600	1	ENST00000324856.7:c.6343C>T	p.Gln2115Ter	p.Q2115*	ENST00000324856	NM_006015.4	2115	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	114	575	0	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690846	89690846	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	63	349	0	ENST00000371953.3:c.253G>T	p.Val85Phe	p.V85F	ENST00000371953	NM_000314.4	85	Gtt/Ttt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98220339	98220339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	71	373	0	ENST00000331920.6:c.3124G>A	p.Val1042Met	p.V1042M	ENST00000331920	NM_000264.3	1042	Gtg/Atg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692792	89692792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	70	380	1	ENST00000371953.3:c.276C>A	p.Asp92Glu	p.D92E	ENST00000371953	NM_000314.4	92	gaC/gaA																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	58	375	4	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42860345	42860345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	104	527	1	ENST00000398585.3:c.532G>A	p.Gly178Ser	p.G178S	ENST00000398585	NM_001135099.1	178	Ggc/Agc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	59	295	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																														
B2M	567	MSKCC	GRCh37	15	45003812	45003812	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	57	490	0	ENST00000558401.1:c.67+1G>A		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
BMPR1A	657	MSKCC	GRCh37	10	88676946	88676946	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147971049		P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	45	219	1	ENST00000372037.3:c.731G>A	p.Arg244Gln	p.R244Q	ENST00000372037	NM_004329.2	244	cGa/cAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11206806	11206806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	104	577	1	ENST00000361445.4:c.4613G>A	p.Arg1538Gln	p.R1538Q	ENST00000361445	NM_004958.3	1538	cGg/cAg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40359648	40359648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	108	625	2	ENST00000293328.3:c.2005G>A	p.Val669Met	p.V669M	ENST00000293328	NM_012448.3	669	Gtg/Atg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533914	63533914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	65	414	0	ENST00000307078.5:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000307078	NM_004655.3	414	Cgg/Tgg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2104304	2104304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	59	526	0	ENST00000219476.3:c.344G>A	p.Arg115His	p.R115H	ENST00000219476	NM_000548.3	115	cGt/cAt																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29194905	29194905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	104	621	1	ENST00000240100.2:c.823C>T	p.Arg275Cys	p.R275C	ENST00000240100	NM_001394.6	275	Cgc/Tgc																																																																														
SH2B3	10019	MSKCC	GRCh37	12	111855990	111855990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201886863		P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	103	498	1	ENST00000341259.2:c.41C>T	p.Ala14Val	p.A14V	ENST00000341259	NM_005475.2	14	gCg/gTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209367	98209367	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45535032		P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	74	478	0	ENST00000331920.6:c.4171C>T	p.Arg1391Trp	p.R1391W	ENST00000331920	NM_000264.3	1391	Cgg/Tgg																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30135304	30135304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	83	389	1	ENST00000331968.5:c.514C>T	p.Arg172Cys	p.R172C	ENST00000331968	NM_002742.2	172	Cgt/Tgt																																																																														
ETV6	2120	MSKCC	GRCh37	12	12022454	12022454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	117	757	0	ENST00000396373.4:c.560C>T	p.Thr187Met	p.T187M	ENST00000396373	NM_001987.4	187	aCg/aTg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43714075	43714075	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	92	599	0	ENST00000382044.4:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000382044	NM_001141980.1	1360	Cga/Tga																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31385105	31385105	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	112	494	0	ENST00000328111.2:c.1490G>A	p.Arg497Gln	p.R497Q	ENST00000328111	NM_006892.3	497	cGg/cAg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074223	8074223	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	74	391	0	ENST00000377482.5:c.436del	p.Cys146ValfsTer29	p.C146Vfs*29	ENST00000377482	NM_018948.3	146	Tgt/gt																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176153781	176153781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	69	468	0	ENST00000367669.3:c.455G>A	p.Gly152Asp	p.G152D	ENST00000367669	NM_022457.5	152	gGc/gAc																																																																														
SDHD	6392	MSKCC	GRCh37	11	111958641	111958641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	81	432	2	ENST00000375549.3:c.113G>A	p.Arg38Gln	p.R38Q	ENST00000375549	NM_003002.3	38	cGa/cAa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73342974	73342974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143183542		P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	79	475	0	ENST00000377767.4:c.1832G>A	p.Arg611His	p.R611H	ENST00000377767	NM_014953.3	611	cGt/cAt																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093358	30093358	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	94	507	0	ENST00000331968.5:c.1905G>T	p.Gln635His	p.Q635H	ENST00000331968	NM_002742.2	635	caG/caT																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779704	3779704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	95	614	0	ENST00000262367.5:c.5344G>A	p.Ala1782Thr	p.A1782T	ENST00000262367	NM_004380.2	1782	Gcg/Acg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351106	89351106	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115797011		P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	120	625	0	ENST00000301030.4:c.1844C>T	p.Ala615Val	p.A615V	ENST00000301030	NM_001256183.1	615	gCg/gTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15974898	15974898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	80	582	0	ENST00000268712.3:c.3977G>A	p.Arg1326Gln	p.R1326Q	ENST00000268712	NM_006311.3	1326	cGa/cAa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47685282	47685282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	64	350	0	ENST00000347630.2:c.668C>T	p.Pro223Leu	p.P223L	ENST00000347630	NM_001007230.1	223	cCg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435278	56435278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	84	616	0	ENST00000407977.2:c.1859C>A	p.Pro620His	p.P620H	ENST00000407977		620	cCt/cAt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119045	70119045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	81	430	0	ENST00000245479.2:c.617C>T	p.Ala206Val	p.A206V	ENST00000245479	NM_000346.3	206	gCg/gTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7143063	7143063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	90	533	0	ENST00000302850.5:c.2306A>G	p.Asn769Ser	p.N769S	ENST00000302850	NM_000208.2	769	aAt/aGt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271692	15271692	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	124	722	1	ENST00000263388.2:c.6747del	p.Glu2250AsnfsTer79	p.E2250Nfs*79	ENST00000263388	NM_000435.2	2249	ccC/cc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266720	18266720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	114	609	0	ENST00000222254.8:c.31G>A	p.Ala11Thr	p.A11T	ENST00000222254	NM_005027.3	11	Gct/Act																																																																														
XPO1	7514	MSKCC	GRCh37	2	61706044	61706044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	103	647	0	ENST00000401558.2:c.3127C>T	p.Arg1043Trp	p.R1043W	ENST00000401558	NM_003400.3	1043	Cgg/Tgg																																																																														
CASP8	841	MSKCC	GRCh37	2	202137374	202137374	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	56	367	0	ENST00000358485.4:c.602T>G	p.Ile201Ser	p.I201S	ENST00000358485	NM_001080125.1	201	aTt/aGt																																																																														
AURKA	6790	MSKCC	GRCh37	20	54948503	54948503	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	75	466	0	ENST00000312783.6:c.815T>A	p.Ile272Asn	p.I272N	ENST00000312783	NM_198436.1	272	aTt/aAt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138474810	138474810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	49	409	0	ENST00000289153.2:c.183G>C	p.Lys61Asn	p.K61N	ENST00000289153	NM_006219.2	61	aaG/aaC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951888	178951888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	120	457	0	ENST00000263967.3:c.2943G>T	p.Gln981His	p.Q981H	ENST00000263967	NM_006218.2	981	caG/caT																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56171073	56171073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	73	351	0	ENST00000399503.3:c.1901C>T	p.Ala634Val	p.A634V	ENST00000399503	NM_005921.1	634	gCa/gTa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180057582	180057582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	116	661	0	ENST00000261937.6:c.373G>A	p.Ala125Thr	p.A125T	ENST00000261937	NM_182925.4	125	Gcc/Acc																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287293	33287293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	92	540	0	ENST00000374542.5:c.1804G>A	p.Glu602Lys	p.E602K	ENST00000374542	NM_001141970.1	602	Gag/Aag																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138199637	138199637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	71	485	0	ENST00000237289.4:c.1055A>G	p.Glu352Gly	p.E352G	ENST00000237289	NM_001270507.1	352	gAg/gGg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38287337	38287337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143241978		P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	81	596	1	ENST00000425967.3:c.320C>T	p.Ala107Val	p.A107V	ENST00000425967	NM_001174067.1	107	gCg/gTg																																																																														
PAX5	5079	MSKCC	GRCh37	9	37034000	37034000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	112	428	0	ENST00000358127.4:c.29C>A	p.Pro10His	p.P10H	ENST00000358127	NM_001280556.1	10	cCt/cAt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786872	135786872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	90	435	0	ENST00000298552.3:c.997C>T	p.Pro333Ser	p.P333S	ENST00000298552	NM_001162426.1	333	Cca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	382	498	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	164	463	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	170	344	0				ENST00000310581	NM_198253.2																																																																																
SMARCA4	6597	MSKCC	GRCh37	19	11132522	11132522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	315	597	2	ENST00000344626.4:c.2738C>T	p.Pro913Leu	p.P913L	ENST00000344626	NM_003072.3	913	cCg/cTg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	249	534	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	69	274	0	ENST00000371953.3:c.176C>A	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tAa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43712823	43712823	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28903077		P-0032115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	297	682	0	ENST00000382044.4:c.4361G>A	p.Arg1454Gln	p.R1454Q	ENST00000382044	NM_001141980.1	1454	cGa/cAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709524	176709524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	147	435	2	ENST00000439151.2:c.5951G>A	p.Arg1984Gln	p.R1984Q	ENST00000439151	NM_022455.4	1984	cGa/cAa																																																																														
NSD1	64324	MSKCC	GRCh37	5	176673749	176673750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	203	432	0	ENST00000439151.2:c.4455dup	p.Val1486SerfsTer4	p.V1486Sfs*4	ENST00000439151	NM_022455.4	1483	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	56	893	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	149	535	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	167	744	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	152	361	1	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	72	484	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	22	888	2	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27092756	27092757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	199	667	0	ENST00000324856.7:c.2777_2778insA	p.Gly927TrpfsTer9	p.G927Wfs*9	ENST00000324856	NM_006015.4	926	act/acAt																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88659558	88659558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	47	642	0	ENST00000372037.3:c.341C>T	p.Pro114Leu	p.P114L	ENST00000372037	NM_004329.2	114	cCa/cTa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56477631	56477631	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	209	859	0	ENST00000267101.3:c.179T>G	p.Met60Arg	p.M60R	ENST00000267101	NM_001982.3	60	aTg/aGg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30315474	30315474	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	174	638	0	ENST00000322652.5:c.1159C>T	p.Gln387Ter	p.Q387*	ENST00000322652	NM_015355.2	387	Cag/Tag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119043	70119044	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	181	657	0	ENST00000245479.2:c.618_619dup	p.Leu207ArgfsTer13	p.L207Rfs*13	ENST00000245479	NM_000346.3	205	-/GC																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11129634	11129634	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0032129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	228	811	0	ENST00000344626.4:c.2440A>G	p.Thr814Ala	p.T814A	ENST00000344626	NM_003072.3	814	Acg/Gcg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	384	451	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0032131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	132	395	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	279	550	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138176	64138176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	76	610	2	ENST00000334205.4:c.2099C>T	p.Ser700Leu	p.S700L	ENST00000334205	NM_003942.2	700	tCg/tTg																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1961250	1961253	+	frameshift_variant	Frame_Shift_Del	DEL	TCCC	TCCC	-			P-0032131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	174	514	0	ENST00000382891.5:c.3039_3042del	p.Pro1014SerfsTer19	p.P1014Sfs*19	ENST00000382891	NM_133335.3	1013	aTCCCt/at																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591127	67591269	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	AGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTT	AGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTT	-			P-0032131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	123	246	0	ENST00000274335.5:c.1720_1767del		p.X574_splice	ENST00000274335		574	AGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTT/-																																																																														
FANCC	2176	MSKCC	GRCh37	9	97934390	97934390	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	170	270	0	ENST00000289081.3:c.385A>G	p.Lys129Glu	p.K129E	ENST00000289081	NM_000136.2	129	Aaa/Gaa																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	58	461	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	52	552	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	124	227	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	84	288	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519925		P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	39	568	0	ENST00000263967.3:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000263967	NM_006218.2	453	Gaa/Caa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807889	1807889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	439	695	0	ENST00000260795.2:c.1948A>G	p.Lys650Glu	p.K650E	ENST00000260795		650	Aag/Gag																																																																														
DDR2	4921	MSKCC	GRCh37	1	162724541	162724541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	224	518	1	ENST00000367921.3:c.313C>T	p.Arg105Cys	p.R105C	ENST00000367921	NM_006182.2	105	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	193	591	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	274	623	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176175942	176175942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	33	57	0	ENST00000367669.3:c.173C>T	p.Ser58Leu	p.S58L	ENST00000367669	NM_022457.5	58	tCg/tTg																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	23	622	0	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26101089	26101089	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	28	388	0	ENST00000435504.4:c.3G>A	p.Met1?	p.M1?	ENST00000435504		1	atG/atA																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495496	56495496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	164	581	0	ENST00000267101.3:c.3686C>T	p.Ser1229Leu	p.S1229L	ENST00000267101	NM_001982.3	1229	tCa/tTa																																																																														
IRF4	3662	MSKCC	GRCh37	6	393285	393285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	128	412	0	ENST00000380956.4:c.133G>A	p.Glu45Lys	p.E45K	ENST00000380956	NM_001195286.1	45	Gag/Aag																																																																														
RUNX1	861	MSKCC	GRCh37	21	36259183	36259183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	250	502	0	ENST00000300305.3:c.308C>T	p.Pro103Leu	p.P103L	ENST00000300305		103	cCt/cTt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9787063	9787063	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	118	435	0	ENST00000377346.4:c.3094A>T	p.Asn1032Tyr	p.N1032Y	ENST00000377346	NM_005026.3	1032	Aac/Tac																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983074	201983074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	67	633	0	ENST00000359651.3:c.923C>T	p.Ser308Phe	p.S308F	ENST00000359651		308	tCc/tTc																																																																														
TET1	80312	MSKCC	GRCh37	10	70446429	70446429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	264	358	0	ENST00000373644.4:c.5369C>A	p.Thr1790Lys	p.T1790K	ENST00000373644	NM_030625.2	1790	aCa/aAa																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14041587	14041587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	44	514	0	ENST00000311895.7:c.2134G>A	p.Glu712Lys	p.E712K	ENST00000311895	NM_005236.2	712	Gag/Aag																																																																														
CDH1	999	MSKCC	GRCh37	16	68855937	68855937	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	249	444	0	ENST00000261769.5:c.1745del	p.Leu582ArgfsTer2	p.L582Rfs*2	ENST00000261769	NM_004360.3	582	cTg/cg																																																																														
NF1	4763	MSKCC	GRCh37	17	29657438	29657438	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	363	637	0	ENST00000358273.4:c.5734A>G	p.Ser1912Gly	p.S1912G	ENST00000358273	NM_001042492.2	1912	Agt/Ggt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118996	70118996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	134	568	0	ENST00000245479.2:c.568G>A	p.Glu190Lys	p.E190K	ENST00000245479	NM_000346.3	190	Gag/Aag																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25982457	25982457	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	63	392	0	ENST00000435504.4:c.833T>A	p.Leu278Gln	p.L278Q	ENST00000435504		278	cTg/cAg																																																																														
MYD88	4615	MSKCC	GRCh37	3	38180353	38180353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200093616		P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	47	660	0	ENST00000396334.3:c.201G>A	p.Met67Ile	p.M67I	ENST00000396334	NM_002468.4	67	atG/atA																																																																														
TET2	54790	MSKCC	GRCh37	4	106155793	106155793	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	70	454	0	ENST00000380013.4:c.694C>T	p.Gln232Ter	p.Q232*	ENST00000380013	NM_001127208.2	232	Caa/Taa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541048	187541052	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTT	AAGTT	-			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	214	444	0	ENST00000441802.2:c.6688_6692del	p.Asn2230GlnfsTer14	p.N2230Qfs*14	ENST00000441802	NM_005245.3	2230	AACTTc/c																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56152510	56152510	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	51	288	0	ENST00000399503.3:c.566T>G	p.Leu189Arg	p.L189R	ENST00000399503	NM_005921.1	189	cTg/cGg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652019	36652040	+	frameshift_variant	Frame_Shift_Del	DEL	GCGATGGAACTTCGACTTTGTC	GCGATGGAACTTCGACTTTGTC	-			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	41	677	0	ENST00000244741.5:c.141_162del	p.Arg48ProfsTer93	p.R48Pfs*93	ENST00000244741	NM_000389.4	47	gaGCGATGGAACTTCGACTTTGTC/ga																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43748474	43748474	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	135	236	0	ENST00000523873.1:c.428C>G	p.Ser143Ter	p.S143*	ENST00000523873		143	tCa/tGa																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137519709	137519709	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	52	377	0	ENST00000367739.4:c.929C>G	p.Ser310Ter	p.S310*	ENST00000367739	NM_000416.2	310	tCa/tGa																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346181	152346181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	333	516	0	ENST00000359321.1:c.389T>C	p.Leu130Pro	p.L130P	ENST00000359321	NM_005431.1	130	cTt/cCt																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38205119	38205119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	179	727	0	ENST00000317025.8:c.571G>A	p.Glu191Lys	p.E191K	ENST00000317025	NM_023034.1	191	Gaa/Aaa																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211350	98211350	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	40	528	0	ENST00000331920.6:c.3804+1G>A		p.X1268_splice	ENST00000331920	NM_000264.3	1268																																																																															
KDM6A	7403	MSKCC	GRCh37	X	44922952	44922952	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	291	241	0	ENST00000377967.4:c.1813G>T	p.Gly605Ter	p.G605*	ENST00000377967	NM_021140.2	605	Gga/Tga																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1808889	1808900	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGGACACCC	GCCAGGACACCC	T			P-0032134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	264	654	0	ENST00000260795.2:c.2321_2332delinsT	p.Gly774ValfsTer39	p.G774Vfs*39	ENST00000260795		774	gGCCAGGACACCCcc/gTcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	226	504	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	296	568	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	321	324	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																														
PAK7	57144	MSKCC	GRCh37	20	9538323	9538323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	72	549	0	ENST00000353224.5:c.1675C>T	p.Leu559Phe	p.L559F	ENST00000353224	NM_177990.2	559	Ctt/Ttt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	48	673	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0032140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	76	663	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
BCL2L11	10018	MSKCC	GRCh37	2	111921774	111921774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150291943		P-0032153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	81	390	0	ENST00000393256.3:c.563G>A	p.Arg188His	p.R188H	ENST00000393256	NM_006538.4	188	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0032153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	217	582	1	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
BIRC3	330	MSKCC	GRCh37	11	102195365	102195365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	179	442	0	ENST00000263464.3:c.125G>T	p.Gly42Val	p.G42V	ENST00000263464	NM_001165.4	42	gGg/gTg																																																																														
FANCA	2175	MSKCC	GRCh37	16	89880984	89880984	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	158	467	0	ENST00000389301.3:c.227A>G	p.Lys76Arg	p.K76R	ENST00000389301	NM_000135.2	76	aAa/aGa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0032158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	15	439	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	44	596	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36988388	36988397	+	frameshift_variant	Frame_Shift_Del	DEL	CCACGGCGTG	CCACGGCGTG	-			P-0032158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	13	162	0	ENST00000354822.5:c.256_265del	p.His86GlyfsTer12	p.H86Gfs*12	ENST00000354822	NM_001079668.2	86	CACGCCGTGGgg/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	335	439	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	125	710	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023860	27023861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	50	112	0	ENST00000324856.7:c.971dup	p.Ala325ArgfsTer75	p.A325Rfs*75	ENST00000324856	NM_006015.4	322	-/G																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604652	48604652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	70	278	0	ENST00000342988.3:c.1474G>T	p.Val492Phe	p.V492F	ENST00000342988	NM_005359.5	492	Gtt/Ttt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974787	21974799	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCGAAGGCTC	CAGCCGAAGGCTC	-			P-0032169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	11	92	0	ENST00000304494.5:c.28_40del	p.Glu10ThrfsTer12	p.E10Tfs*12	ENST00000304494	NM_000077.4	10	GAGCCTTCGGCTGac/ac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974787	21974799	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCGAAGGCTC	CAGCCGAAGGCTC	-			P-0032169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	11	92	0	ENST00000304494.5:c.28_40del	p.Glu10ThrfsTer12	p.E10Tfs*12	ENST00000304494	NM_000077.4	10	GAGCCTTCGGCTGac/ac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	13	511	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
STK40	83931	MSKCC	GRCh37	1	36824350	36824350	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	89	521	0	ENST00000373129.3:c.186del	p.Tyr63IlefsTer3	p.Y63Ifs*3	ENST00000373129	NM_032017.1	62	ttC/tt																																																																														
ATRX	546	MSKCC	GRCh37	X	76855210	76855211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	35	261	0	ENST00000373344.5:c.5776dup	p.Asp1926GlyfsTer16	p.D1926Gfs*16	ENST00000373344	NM_000489.3	1926	gat/gGat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	55	425	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	62	436	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	63	419	3	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	61	494	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157522274	157522274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	39	624	0	ENST00000346085.5:c.4546G>A	p.Val1516Ile	p.V1516I	ENST00000346085	NM_020732.3	1516	Gtc/Atc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45368213	45368213	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	75	292	0	ENST00000262160.6:c.1389C>A	p.Cys463Ter	p.C463*	ENST00000262160	NM_005901.5	463	tgC/tgA																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746113	162746113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	39	281	1	ENST00000367921.3:c.2236C>T	p.Arg746Trp	p.R746W	ENST00000367921	NM_006182.2	746	Cgg/Tgg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175868	24175868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	27	372	0	ENST00000263121.7:c.1096C>T	p.Arg366Cys	p.R366C	ENST00000263121	NM_003073.3	366	Cgc/Tgc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046363	180046363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	70	473	0	ENST00000261937.6:c.2651G>A	p.Gly884Asp	p.G884D	ENST00000261937	NM_182925.4	884	gGc/gAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119008	70119008	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	54	572	0	ENST00000245479.2:c.580G>T	p.Glu194Ter	p.E194*	ENST00000245479	NM_000346.3	194	Gag/Tag																																																																														
KIT	3815	MSKCC	GRCh37	4	55564641	55564641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	31	480	0	ENST00000288135.5:c.529C>T	p.Arg177Cys	p.R177C	ENST00000288135	NM_000222.2	177	Cgc/Tgc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128201270	128201270	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	66	534	0	ENST00000265960.3:c.1465C>T	p.Arg489Ter	p.R489*	ENST00000265960	NM_001006617.1	489	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70348478	70348478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	38	520	1	ENST00000374080.3:c.3385G>A	p.Ala1129Thr	p.A1129T	ENST00000374080		1129	Gct/Act																																																																														
STAG2	10735	MSKCC	GRCh37	X	123159694	123159694	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	25	310	0	ENST00000218089.9:c.49T>C	p.Ser17Pro	p.S17P	ENST00000218089	NM_001042749.1	17	Tca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0032178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	146	560	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56774081	56774081	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	72	561	0	ENST00000337432.4:c.432A>G	p.Ile144Met	p.I144M	ENST00000337432	NM_058216.2	144	atA/atG																																																																														
MET	4233	MSKCC	GRCh37	7	116435834	116435834	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	142	582	0	ENST00000397752.3:c.3924C>G	p.Cys1308Trp	p.C1308W	ENST00000397752	NM_000245.2	1308	tgC/tgG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	188	481	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	22	229	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	52	246	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	52	246	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	52	246	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	177	661	1	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27102083	27102083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	119	546	0	ENST00000324856.7:c.5009G>T	p.Trp1670Leu	p.W1670L	ENST00000324856	NM_006015.4	1670	tGg/tTg																																																																														
AKT3	10000	MSKCC	GRCh37	1	243858994	243858995	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	38	408	0	ENST00000263826.5:c.70_71delinsAG	p.Pro24Arg	p.P24R	ENST00000263826	NM_005465.4	24	CCa/AGa																																																																														
POLE	5426	MSKCC	GRCh37	12	133226463	133226463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	32	406	0	ENST00000320574.5:c.3595G>A	p.Glu1199Lys	p.E1199K	ENST00000320574	NM_006231.2	1199	Gag/Aag																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40684218	40684218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	99	438	0	ENST00000249776.8:c.816G>T	p.Glu272Asp	p.E272D	ENST00000249776	NM_033286.3	272	gaG/gaT																																																																														
MGA	23269	MSKCC	GRCh37	15	41999981	41999982	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	123	716	2	ENST00000219905.7:c.2244_2245delinsTT	p.Leu748_Gly749delinsPheTer	p.L748_G749delinsF*	ENST00000219905	NM_001164273.1	748	ttGGga/ttTTga																																																																														
FANCA	2175	MSKCC	GRCh37	16	89865620	89865620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	123	506	0	ENST00000389301.3:c.847G>T	p.Ala283Ser	p.A283S	ENST00000389301	NM_000135.2	283	Gct/Tct																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58678059	58678059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	66	197	0	ENST00000305921.3:c.284G>C	p.Arg95Pro	p.R95P	ENST00000305921	NM_003620.3	95	cGt/cCt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211848	36211848	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	304	911	0	ENST00000222270.7:c.1599T>G	p.Ser533Arg	p.S533R	ENST00000222270	NM_014727.1	533	agT/agG																																																																														
ATR	545	MSKCC	GRCh37	3	142242879	142242879	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	41	495	0	ENST00000350721.4:c.4108G>C	p.Asp1370His	p.D1370H	ENST00000350721	NM_001184.3	1370	Gat/Cat																																																																														
TP63	8626	MSKCC	GRCh37	3	189608667	189608667	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	63	470	0	ENST00000264731.3:c.1742T>C	p.Met581Thr	p.M581T	ENST00000264731	NM_003722.4	581	aTg/aCg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524595	187524595	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	287	673	1	ENST00000441802.2:c.11085A>T	p.Leu3695Phe	p.L3695F	ENST00000441802	NM_005245.3	3695	ttA/ttT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538353	187538353	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	124	340	0	ENST00000441802.2:c.8881G>T	p.Gly2961Trp	p.G2961W	ENST00000441802	NM_005245.3	2961	Ggg/Tgg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370829	55370829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	76	242	0	ENST00000297316.4:c.131T>A	p.Val44Glu	p.V44E	ENST00000297316	NM_022454.3	44	gTg/gAg																																																																														
AR	367	MSKCC	GRCh37	X	66765919	66765919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	91	820	0	ENST00000374690.3:c.931C>G	p.Pro311Ala	p.P311A	ENST00000374690	NM_000044.3	311	Cct/Gct																																																																														
CARD11	84433	MSKCC	GRCh37	7	2976710	2976710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	75	493	0	ENST00000396946.4:c.1302G>T	p.Lys434Asn	p.K434N	ENST00000396946	NM_032415.4	434	aaG/aaT																																																																														
AGO2	27161	MSKCC	GRCh37	8	141557700	141557700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	139	477	0	ENST00000220592.5:c.1615G>T	p.Val539Leu	p.V539L	ENST00000220592	NM_012154.3	539	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	168	537	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MST1	4485	MSKCC	GRCh37	3	49725264	49725264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142358513		P-0032194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	78	137	3	ENST00000449682.2:c.161C>T	p.Ala54Val	p.A54V	ENST00000449682	NM_020998.3	54	gCg/gTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151902229	151902229	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0032194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	203	377	5	ENST00000262189.6:c.3923C>G	p.Ser1308Ter	p.S1308*	ENST00000262189	NM_170606.2	1308	tCa/tGa																																																																														
PGR	5241	MSKCC	GRCh37	11	100998745	100998745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	281	493	3	ENST00000325455.5:c.1057G>T	p.Val353Phe	p.V353F	ENST00000325455	NM_001202474.3	353	Gtc/Ttc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134670279	134670279	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	95	340	0	ENST00000398015.3:c.190T>A	p.Phe64Ile	p.F64I	ENST00000398015	NM_004441.4	64	Ttc/Atc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138417861	138417861	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	248	428	3	ENST00000289153.2:c.1658A>T	p.Asn553Ile	p.N553I	ENST00000289153	NM_006219.2	553	aAt/aTt																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440386	52440386	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	117	503	0	ENST00000460680.1:c.666del	p.Tyr223ThrfsTer8	p.Y223Tfs*8	ENST00000460680	NM_004656.3	222	ccC/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	188	259	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0032210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	224	580	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0032210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	240	530	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	152009018	152009018	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	218	356	0	ENST00000262189.6:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000262189	NM_170606.2	202	Cag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434348	49434348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	336	674	1	ENST00000301067.7:c.7205C>A	p.Ser2402Ter	p.S2402*	ENST00000301067	NM_003482.3	2402	tCa/tAa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444499	49444500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	306	623	0	ENST00000301067.7:c.2871dup	p.Glu958ArgfsTer11	p.E958Rfs*11	ENST00000301067	NM_003482.3	957	-/A																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164987	47164987	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	195	383	0	ENST00000409792.3:c.1139A>G	p.Tyr380Cys	p.Y380C	ENST00000409792	NM_014159.6	380	tAt/tGt																																																																														
PPP4R2	151987	MSKCC	GRCh37	3	73114592	73114592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	122	261	0	ENST00000356692.5:c.973C>T	p.Gln325Ter	p.Q325*	ENST00000356692		325	Caa/Taa																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	87	534	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																														
AR	367	MSKCC	GRCh37	X	66943553	66943553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	39	220	0	ENST00000374690.3:c.2633C>G	p.Thr878Ser	p.T878S	ENST00000374690	NM_000044.3	878	aCt/aGt																																																																														
SYK	6850	MSKCC	GRCh37	9	93606505	93606505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	104	710	0	ENST00000375746.1:c.325C>T	p.Arg109Trp	p.R109W	ENST00000375746	NM_001174167.1	109	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	471	599	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	233	474	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	103	245	0	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971142	21971142	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	87	330	0	ENST00000304494.5:c.216C>A	p.Cys72Ter	p.C72*	ENST00000304494	NM_000077.4	72	tgC/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971142	21971142	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	87	330	0	ENST00000304494.5:c.216C>A	p.Cys72Ter	p.C72*	ENST00000304494	NM_000077.4	72	tgC/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971142	21971142	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	87	330	0	ENST00000304494.5:c.216C>A	p.Cys72Ter	p.C72*	ENST00000304494	NM_000077.4	72	tgC/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	47	497	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	53	701	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	125	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115940	8115940	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	126	353	0	ENST00000346208.3:c.1287del	p.Phe430LeufsTer45	p.F430Lfs*45	ENST00000346208		429	tCc/tc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859492	151859492	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	287	544	0	ENST00000262189.6:c.11170G>T	p.Glu3724Ter	p.E3724*	ENST00000262189	NM_170606.2	3724	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	66	431	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562246	21562246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	140	754	3	ENST00000382592.4:c.1673G>A	p.Arg558His	p.R558H	ENST00000382592	NM_014572.2	558	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	80	471	1	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492875	56492875	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	106	341	1	ENST00000407977.2:c.64C>T	p.Gln22Ter	p.Q22*	ENST00000407977		22	Cag/Tag																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0032229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	29	254	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	882	394	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	147	501	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
FLT1	2321	MSKCC	GRCh37	13	28891641	28891642	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0032231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	30	445	1	ENST00000282397.4:c.3379_3380delinsAA	p.Pro1127Asn	p.P1127N	ENST00000282397	NM_002019.4	1127	CCt/AAt																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103514757	103514757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	42	246	1	ENST00000355739.4:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000355739	NM_000123.3	420	Cgt/Tgt																																																																														
CBFB	865	MSKCC	GRCh37	16	67116203	67116203	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	53	346	1	ENST00000412916.2:c.487G>T	p.Glu163Ter	p.E163*	ENST00000412916		163	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	20	401	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231335	5231335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769069932		P-0032232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	36	428	0	ENST00000357368.4:c.2141G>A	p.Arg714His	p.R714H	ENST00000357368	NM_002850.3	714	cGc/cAc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101907117	101907117	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	12	313	0	ENST00000374994.4:c.1078del	p.Ser360GlnfsTer29	p.S360Qfs*29	ENST00000374994	NM_004612.2	359	gaT/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	54	718	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3808889	3808889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	62	600	0	ENST00000262367.5:c.3335G>A	p.Arg1112Gln	p.R1112Q	ENST00000262367	NM_004380.2	1112	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	269	574	3	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	239	426	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	284	654	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17122346	17122346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190786280		P-0032238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	181	426	0	ENST00000285071.4:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000285071	NM_144997.5	350	cGg/cAg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17117118	17117118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	90	582	0	ENST00000285071.4:c.1591G>A	p.Asp531Asn	p.D531N	ENST00000285071	NM_144997.5	531	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	233	603	1	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118377337	118377337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	40	255	0	ENST00000534358.1:c.10730C>T	p.Thr3577Met	p.T3577M	ENST00000534358	NM_005933.3	3577	aCg/aTg																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266246	198266246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	24	353	0	ENST00000335508.6:c.2374G>T	p.Val792Leu	p.V792L	ENST00000335508	NM_012433.2	792	Gta/Tta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	312	771	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	170	273	1	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	192	564	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PARK2	5071	MSKCC	GRCh37	6	161969968	161969968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	269	577	2	ENST00000366898.1:c.1001G>A	p.Arg334His	p.R334H	ENST00000366898	NM_004562.2	334	cGc/cAc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251635	212251635	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	172	554	0	ENST00000342788.4:c.3424C>T	p.Arg1142Ter	p.R1142*	ENST00000342788	NM_005235.2	1142	Cga/Tga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134881022	134881022	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	178	527	2	ENST00000398015.3:c.1585G>A	p.Asp529Asn	p.D529N	ENST00000398015	NM_004441.4	529	Gat/Aat																																																																														
CALR	811	MSKCC	GRCh37	19	13050017	13050017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	201	512	0	ENST00000316448.5:c.161G>T	p.Gly54Val	p.G54V	ENST00000316448	NM_004343.3	54	gGc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	13	567	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0032312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	8	540	3	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0032312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	25	787	2	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711978	89711980	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	132	390	0	ENST00000371953.3:c.597_599del	p.Met199_Phe200delinsIle	p.M199_F200delinsI	ENST00000371953	NM_000314.4	199	aTGTtt/att																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	140	420	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3807301	3807301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	93	332	0	ENST00000262367.5:c.3686G>A	p.Ser1229Asn	p.S1229N	ENST00000262367	NM_004380.2	1229	aGc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	179	620	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30325846	30325846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	48	315	0	ENST00000322652.5:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000322652	NM_015355.2	682	Cgt/Tgt																																																																														
CD79B	974	MSKCC	GRCh37	17	62006635	62006635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	73	668	0	ENST00000392795.3:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000392795	NM_001039933.1	215	cGg/cAg																																																																														
SRC	6714	MSKCC	GRCh37	20	36031599	36031599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	70	531	0	ENST00000358208.4:c.1428C>A	p.Asp476Glu	p.D476E	ENST00000358208		476	gaC/gaA																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	27	211	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175507	112175520	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGTGAACCATG	CAGAGTGAACCATG	-			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	59	329	0	ENST00000257430.4:c.4219_4232del	p.Ser1407TrpfsTer11	p.S1407Wfs*11	ENST00000257430	NM_000038.5	1406	CAGAGTGAACCATGc/c																																																																														
PREX2	80243	MSKCC	GRCh37	8	68930124	68930132	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAAAATG	ACAAAAATG	CCAAAATA			P-0032334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	46	323	0	ENST00000288368.4:c.185_193delinsCCAAAATA	p.Asp62AlafsTer4	p.D62Afs*4	ENST00000288368	NM_024870.2	62	gACAAAAATGtg/gCCAAAATAtg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0032375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	81	387	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	54	221	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	89	374	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63526195	63526195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	121	360	0	ENST00000307078.5:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000307078	NM_004655.3	811	Gag/Aag																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379758	17379758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	157	643	0	ENST00000359435.4:c.143G>T	p.Arg48Leu	p.R48L	ENST00000359435	NM_001033549.1	48	cGc/cTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	28	358	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	36	474	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0032376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	27	424	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711878	89711879	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	23	308	0	ENST00000371953.3:c.497dup	p.Thr167AsnfsTer13	p.T167Nfs*13	ENST00000371953	NM_000314.4	166	gta/gTta																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	90	292	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024227751		P-0032384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	114	394	0	ENST00000305123.5:c.109G>A	p.Glu37Lys	p.E37K	ENST00000305123	NM_005544.2	37	Gag/Aag																																																																														
RASA1	5921	MSKCC	GRCh37	5	86676366	86676366	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	60	218	0	ENST00000274376.6:c.2644C>T	p.Gln882Ter	p.Q882*	ENST00000274376	NM_002890.2	882	Cag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37673793	37673793	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	130	440	0	ENST00000447079.4:c.2947C>T	p.Arg983Ter	p.R983*	ENST00000447079	NM_015083.1	983	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56495438	56495438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	125	459	0	ENST00000267101.3:c.3628C>T	p.His1210Tyr	p.H1210Y	ENST00000267101	NM_001982.3	1210	Cat/Tat																																																																														
FLT1	2321	MSKCC	GRCh37	13	29041159	29041159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	136	522	0	ENST00000282397.4:c.269G>A	p.Ser90Asn	p.S90N	ENST00000282397	NM_002019.4	90	aGt/aAt																																																																														
TSC2	7249	MSKCC	GRCh37	16	2120554	2120554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	178	649	0	ENST00000219476.3:c.1814C>T	p.Pro605Leu	p.P605L	ENST00000219476	NM_000548.3	605	cCa/cTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29528481	29528481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	67	337	0	ENST00000358273.4:c.1238C>T	p.Ser413Leu	p.S413L	ENST00000358273	NM_001042492.2	413	tCa/tTa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39567815	39567815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	57	197	0	ENST00000262039.4:c.571G>A	p.Asp191Asn	p.D191N	ENST00000262039	NM_002647.2	191	Gat/Aat																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266477	41266477	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	97	262	0	ENST00000349496.5:c.274C>T	p.Gln92Ter	p.Q92*	ENST00000349496	NM_001904.3	92	Cag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521063	187521066	+	frameshift_variant	Frame_Shift_Del	DEL	GACG	GACG	-			P-0032384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	85	269	0	ENST00000441802.2:c.12089_12092del	p.Pro4030HisfsTer15	p.P4030Hfs*15	ENST00000441802	NM_005245.3	4030	cCGTCa/ca																																																																														
ATRX	546	MSKCC	GRCh37	X	76939979	76939979	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	135	409	0	ENST00000373344.5:c.769A>T	p.Met257Leu	p.M257L	ENST00000373344	NM_000489.3	257	Atg/Ttg																																																																														
BTK	695	MSKCC	GRCh37	X	100615599	100615599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	152	447	0	ENST00000308731.7:c.733G>C	p.Glu245Gln	p.E245Q	ENST00000308731	NM_000061.2	245	Gag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	19	460	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	27	674	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720803	89720804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	16	283	0	ENST00000371953.3:c.955dup	p.Thr319AsnfsTer6	p.T319Nfs*6	ENST00000371953	NM_000314.4	318	-/A																																																																														
CCND2	894	MSKCC	GRCh37	12	4385256	4385256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	296	502	0	ENST00000261254.3:c.281C>T	p.Pro94Leu	p.P94L	ENST00000261254	NM_001759.3	94	cCg/cTg																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18793483	18793483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	137	323	0	ENST00000266497.5:c.4180G>A	p.Glu1394Lys	p.E1394K	ENST00000266497		1394	Gaa/Aaa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81969813	81969813	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	147	476	0	ENST00000359376.3:c.2882C>G	p.Thr961Arg	p.T961R	ENST00000359376	NM_002661.3	961	aCg/aGg																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17382427	17382427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	328	591	0	ENST00000359435.4:c.307G>A	p.Glu103Lys	p.E103K	ENST00000359435	NM_001033549.1	103	Gag/Aag																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18266946	18266946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	159	182	0	ENST00000222254.8:c.257C>T	p.Pro86Leu	p.P86L	ENST00000222254	NM_005027.3	86	cCc/cTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42794089	42794089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	228	441	2	ENST00000575354.2:c.1450C>T	p.Pro484Ser	p.P484S	ENST00000575354	NM_015125.3	484	Cca/Tca																																																																														
TET2	54790	MSKCC	GRCh37	4	106157455	106157455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	130	293	0	ENST00000380013.4:c.2356C>T	p.His786Tyr	p.H786Y	ENST00000380013	NM_001127208.2	786	Cat/Tat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247385	153247385	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	128	201	0	ENST00000281708.4:c.1419-2A>C		p.X473_splice	ENST00000281708	NM_033632.3	473																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	164	293	0				ENST00000310581	NM_198253.2																																																																																
RAD50	10111	MSKCC	GRCh37	5	131924546	131924546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201544462		P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	80	376	0	ENST00000265335.6:c.1219G>A	p.Glu407Lys	p.E407K	ENST00000265335		407	Gaa/Aaa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117715371	117715371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	139	331	0	ENST00000368508.3:c.1118C>T	p.Ser373Phe	p.S373F	ENST00000368508	NM_002944.2	373	tCc/tTc																																																																														
RAC1	5879	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	681	549	0	ENST00000356142.4:c.85C>G	p.Pro29Ala	p.P29A	ENST00000356142	NM_018890.3	29	Cct/Gct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	239	313	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046393	69046393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	181	542	0	ENST00000288368.4:c.3866T>C	p.Met1289Thr	p.M1289T	ENST00000288368	NM_024870.2	1289	aTg/aCg																																																																														
SYK	6850	MSKCC	GRCh37	9	93607792	93607792	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	152	353	0	ENST00000375746.1:c.494A>T	p.Lys165Ile	p.K165I	ENST00000375746	NM_001174167.1	165	aAa/aTa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63409833	63409833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	196	456	1	ENST00000330258.3:c.3334G>A	p.Glu1112Lys	p.E1112K	ENST00000330258	NM_152424.3	1112	Gag/Aag																																																																														
XIAP	331	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	255	608	0	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247195	153247195	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0032392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	153	297	0	ENST00000281708.4:c.1607delinsTT	p.Thr536IlefsTer7	p.T536Ifs*7	ENST00000281708	NM_033632.3	536	aCg/aTTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	20	686	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	164	699	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	30	873	1	ENST00000269305.4:c.454C>T	p.Pro152Ser	p.P152S	ENST00000269305	NM_001126112.2	152	Ccg/Tcg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	200	652	0	ENST00000267101.3:c.850G>C	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Cga																																																																														
TET2	54790	MSKCC	GRCh37	4	106196849	106196849	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	48	378	0	ENST00000380013.4:c.5182G>T	p.Glu1728Ter	p.E1728*	ENST00000380013	NM_001127208.2	1728	Gag/Tag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	80	438	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	310	577	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	73	382	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59853886	59853886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	59	371	0	ENST00000259008.2:c.1973G>A	p.Arg658Gln	p.R658Q	ENST00000259008	NM_032043.2	658	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692830	89692830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	77	160	1	ENST00000371953.3:c.314G>T	p.Cys105Phe	p.C105F	ENST00000371953	NM_000314.4	105	tGt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692919	89692919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	255	551	0	ENST00000371953.3:c.403A>G	p.Ile135Val	p.I135V	ENST00000371953	NM_000314.4	135	Ata/Gta																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508721	106508721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	113	498	0	ENST00000359195.3:c.715G>A	p.Asp239Asn	p.D239N	ENST00000359195	NM_002649.2	239	Gac/Aac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	239	762	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589593	67589598	+	inframe_deletion	In_Frame_Del	DEL	TAACAC	TAACAC	-			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	29	214	0	ENST00000274335.5:c.1357_1362del	p.Asn453_Thr454del	p.N453_T454del	ENST00000274335		452	taTAACACt/tat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424178	49424178	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	92	466	0	ENST00000301067.7:c.13884delC	p.Thr4629ProfsTer11	p.T4629Pfs*11	ENST00000301067	NM_003482.3	4628	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101068	27101068	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	135	699	0	ENST00000324856.7:c.4354delC	p.Gln1452ArgfsTer29	p.Q1452Rfs*29	ENST00000324856	NM_006015.4	1450	ggC/gg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67644874	67644874	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	89	426	0	ENST00000264010.4:c.143del	p.Gly48ValfsTer14	p.G48Vfs*14	ENST00000264010	NM_006565.3	47	Ggg/gg																																																																														
PDPK1	5170	MSKCC	GRCh37	16	2647662	2647662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	111	516	0	ENST00000342085.4:c.1565C>A	p.Thr522Lys	p.T522K	ENST00000342085	NM_002613.4	522	aCg/aAg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37686985	37686985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	116	450	1	ENST00000447079.4:c.3889G>A	p.Val1297Met	p.V1297M	ENST00000447079	NM_015083.1	1297	Gtg/Atg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023810	27023811	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	96	306	0	ENST00000324856.7:c.920dup	p.Tyr308LeufsTer92	p.Y308Lfs*92	ENST00000324856	NM_006015.4	306	cgg/cGgg																																																																														
INSR	3643	MSKCC	GRCh37	19	7267416	7267416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	107	499	0	ENST00000302850.5:c.592G>A	p.Ala198Thr	p.A198T	ENST00000302850	NM_000208.2	198	Gcc/Acc																																																																														
ATR	545	MSKCC	GRCh37	3	142178198	142178198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	42	293	0	ENST00000350721.4:c.7220G>A	p.Arg2407His	p.R2407H	ENST00000350721	NM_001184.3	2407	cGc/cAc																																																																														
MDM4	4194	MSKCC	GRCh37	1	204518670	204518670	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	77	336	0	ENST00000367182.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000367182	NM_001278516.1	445	Cga/Tga																																																																														
BMPR1A	657	MSKCC	GRCh37	10	88659834	88659834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	90	503	0	ENST00000372037.3:c.481G>A	p.Ala161Thr	p.A161T	ENST00000372037	NM_004329.2	161	Gct/Act																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434982	49434983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	54	465	0	ENST00000301067.7:c.6570dupC	p.Thr2191HisfsTer11	p.T2191Hfs*11	ENST00000301067	NM_003482.3	2190	-/C																																																																														
TP53	7157	MSKCC	GRCh37	17	7579561	7579567	+	frameshift_variant	Frame_Shift_Del	DEL	ATCATCC	ATCATCC	-			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	122	689	1	ENST00000269305.4:c.120_126del	p.Met40IlefsTer2	p.M40Ifs*2	ENST00000269305	NM_001126112.2	40	atGGATGAT/at																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36228562	36228562	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	141	728	0	ENST00000222270.7:c.7576T>C	p.Phe2526Leu	p.F2526L	ENST00000222270	NM_014727.1	2526	Ttc/Ctc																																																																														
EPAS1	2034	MSKCC	GRCh37	2	46607835	46607835	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	107	734	0	ENST00000263734.3:c.2024A>G	p.His675Arg	p.H675R	ENST00000263734	NM_001430.4	675	cAt/cGt																																																																														
NSD1	64324	MSKCC	GRCh37	5	176722052	176722053	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	72	465	0	ENST00000439151.2:c.7683_7684insT	p.Gly2562TrpfsTer3	p.G2562Wfs*3	ENST00000439151	NM_022455.4	2561	-/T																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671508	30671508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	139	771	0	ENST00000376406.3:c.5452A>G	p.Met1818Val	p.M1818V	ENST00000376406	NM_014641.2	1818	Atg/Gtg																																																																														
PMS2	5395	MSKCC	GRCh37	7	6031642	6031642	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	89	365	0	ENST00000265849.7:c.950A>G	p.Gln317Arg	p.Q317R	ENST00000265849	NM_000535.5	317	cAg/cGg																																																																														
EZH2	2146	MSKCC	GRCh37	7	148544325	148544326	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0032394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	97	562	0	ENST00000320356.2:c.65_66del	p.Glu22ValfsTer14	p.E22Vfs*14	ENST00000320356	NM_004456.4	22	gAG/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	142	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	323	625	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	27	198	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	110	308	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371633	55371633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	322	581	1	ENST00000297316.4:c.323C>T	p.Ala108Val	p.A108V	ENST00000297316	NM_022454.3	108	gCg/gTg																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40458460	40458460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	585	813	0	ENST00000345506.4:c.1675A>G	p.Asn559Asp	p.N559D	ENST00000345506	NM_003152.3	559	Aac/Gac																																																																														
AXL	558	MSKCC	GRCh37	19	41745096	41745096	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	149	581	0	ENST00000301178.4:c.1162G>T	p.Glu388Ter	p.E388*	ENST00000301178	NM_021913.4	388	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112102954	112102954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	74	346	0	ENST00000257430.4:c.289G>A	p.Gly97Arg	p.G97R	ENST00000257430	NM_000038.5	97	Gga/Aga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878743	151878743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	62	352	0	ENST00000262189.6:c.6202T>C	p.Ser2068Pro	p.S2068P	ENST00000262189	NM_170606.2	2068	Tct/Cct																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0032402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	139	544	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188177	11188177	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	90	377	0	ENST00000361445.4:c.5917A>T	p.Ile1973Phe	p.I1973F	ENST00000361445	NM_004958.3	1973	Atc/Ttc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0032402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	37	169	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21555685	21555685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	131	585	0	ENST00000382592.4:c.2585G>A	p.Arg862Gln	p.R862Q	ENST00000382592	NM_014572.2	862	cGg/cAg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46230625	46230625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	101	495	0	ENST00000334344.6:c.874A>G	p.Ile292Val	p.I292V	ENST00000334344	NM_152641.2	292	Att/Gtt																																																																														
APC	324	MSKCC	GRCh37	5	112174781	112174785	+	frameshift_variant	Frame_Shift_Del	DEL	ATAAA	ATAAA	-			P-0032402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	37	215	0	ENST00000257430.4:c.3493_3497del	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1164	ATAAAa/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	158	558	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	102	381	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	125	400	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	89	391	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	75	297	0	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57470682	57470683	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTT			P-0032403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	86	275	0	ENST00000371085.3:c.156_157insTTTT	p.Lys53PhefsTer2	p.K53Ffs*2	ENST00000371085	NM_000516.4	52	ggt/ggTTTTt																																																																														
MET	4233	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	335	677	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162807	47162807	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	48	358	0	ENST00000409792.3:c.3319G>T	p.Glu1107Ter	p.E1107*	ENST00000409792	NM_014159.6	1107	Gag/Tag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	31	310	0	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																														
NF1	4763	MSKCC	GRCh37	17	29527459	29527459	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	45	329	0	ENST00000358273.4:c.908T>C	p.Leu303Pro	p.L303P	ENST00000358273	NM_001042492.2	303	cTa/cCa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66189938	66189938	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	30	251	0	ENST00000273854.3:c.3009-1G>A		p.X1003_splice	ENST00000273854	NM_004439.5	1003																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971163	21971808	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTAGCTTCTGGGAATGTTGAACTTCAATTTCTTTTTCATTATATTAGTTTTAAAATTATATATTGGGATAGTACAGTTGTATATATTTATGTGGTACAATATGAAGTTATGATCTTT	GAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTAGCTTCTGGGAATGTTGAACTTCAATTTCTTTTTCATTATATTAGTTTTAAAATTATATATTGGGATAGTACAGTTGTATATATTTATGTGGTACAATATGAAGTTATGATCTTT	-			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	20	283	0	ENST00000304494.5:c.151-601_195del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971163	21971808	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTAGCTTCTGGGAATGTTGAACTTCAATTTCTTTTTCATTATATTAGTTTTAAAATTATATATTGGGATAGTACAGTTGTATATATTTATGTGGTACAATATGAAGTTATGATCTTT	GAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTAGCTTCTGGGAATGTTGAACTTCAATTTCTTTTTCATTATATTAGTTTTAAAATTATATATTGGGATAGTACAGTTGTATATATTTATGTGGTACAATATGAAGTTATGATCTTT	-			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	20	283	0	ENST00000304494.5:c.151-601_195del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2A	1029	MSKCC	GRCh37	9	21971163	21971808	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTAGCTTCTGGGAATGTTGAACTTCAATTTCTTTTTCATTATATTAGTTTTAAAATTATATATTGGGATAGTACAGTTGTATATATTTATGTGGTACAATATGAAGTTATGATCTTT	GAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTGTGAGGCACGGGCAAAATAGCAAAGGGGCAGGGACAGACTGACTTTTACTCCAGGCTAACTTCCTGTATTTCCCCTGAGATACAACTACTGAAATTTCTTCCTGAAATTATGTTAGGCCTGGAGATTTTTTTTTTTTTTTTTGTTCACTGCTGTATATCCAAGCGCAGAATGTGGTAATTGTTAAAAAGAGAAAACTTGTTTGTTTGTTAAAACAAATTCTCACAAAACTTTTAAGTTACACTTAGCTTCTGGGAATGTTGAACTTCAATTTCTTTTTCATTATATTAGTTTTAAAATTATATATTGGGATAGTACAGTTGTATATATTTATGTGGTACAATATGAAGTTATGATCTTT	-			P-0032406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	20	283	0	ENST00000304494.5:c.151-601_195del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
SETD2	29072	MSKCC	GRCh37	3	47164505	47164505	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	44	372	0	ENST00000409792.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000409792	NM_014159.6	541	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	147	228	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	123	485	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0032408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	182	394	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0032408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	119	241	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
HIST1H3J	8356	MSKCC	GRCh37	6	27858237	27858238	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0032408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	141	446	0	ENST00000359303.2:c.333_334delTG	p.Ala112TyrfsTer11	p.A112Yfs*11	ENST00000359303	NM_003535.2	111	tgTGct/tgct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717715	89717715	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0032408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	133	325	0	ENST00000371953.3:c.740T>G	p.Leu247Ter	p.L247*	ENST00000371953	NM_000314.4	247	tTa/tGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27094293	27094294	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0032429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	93	342	0	ENST00000324856.7:c.3002_3003del	p.Ser1001TyrfsTer5	p.S1001Yfs*5	ENST00000324856	NM_006015.4	1001	TCt/t																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221642	36221642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	170	676	0	ENST00000222270.7:c.5311C>T	p.Arg1771Trp	p.R1771W	ENST00000222270	NM_014727.1	1771	Cgg/Tgg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201983035	201983035	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	341	736	0	ENST00000359651.3:c.884G>A	p.Trp295Ter	p.W295*	ENST00000359651		295	tGg/tAg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36651921	36651930	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAAGGCCT	AGCAAGGCCT	GGCAGGCCA			P-0032432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	388	599	1	ENST00000244741.5:c.43_52delinsGGCAGGCCA	p.Ser15GlyfsTer16	p.S15Gfs*16	ENST00000244741	NM_000389.4	15	AGCAAGGCCTgc/GGCAGGCCAgc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137323776	137323785	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCGGGACA	ATGCGGGACA	-			P-0032432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	79	735	0	ENST00000481739.1:c.1069_1078del	p.Met357CysfsTer33	p.M357Cfs*33	ENST00000481739	NM_002957.4	357	ATGCGGGACAtg/tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0032438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	175	644	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589168	67589168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	65	305	0	ENST00000274335.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000274335		386	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	96	222	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176015350	176015350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	45	377	0	ENST00000367669.3:c.1388C>T	p.Pro463Leu	p.P463L	ENST00000367669	NM_022457.5	463	cCt/cTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1226567	1226567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	155	506	0	ENST00000326873.7:c.1223G>A	p.Gly408Asp	p.G408D	ENST00000326873	NM_000455.4	408	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0032439-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	97	409	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032439-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	271	591	0	ENST00000269305.4:c.613dup	p.Tyr205LeufsTer4	p.Y205Lfs*4	ENST00000269305	NM_001126112.2	205	tat/tTat																																																																														
APC	324	MSKCC	GRCh37	5	112175735	112175751	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCCAGATGCTGATAC	CTTCCAGATGCTGATAC	-			P-0032439-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	85	339	0	ENST00000257430.4:c.4444_4460del	p.Leu1482PhefsTer26	p.L1482Ffs*26	ENST00000257430	NM_000038.5	1482	CTTCCAGATGCTGATACt/t																																																																														
NBN	4683	MSKCC	GRCh37	8	90971001	90971001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032439-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			858	112	433	1	ENST00000265433.3:c.1076A>T	p.Asn359Ile	p.N359I	ENST00000265433	NM_002485.4	359	aAc/aTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420081	49420081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032439-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	78	499	0	ENST00000301067.7:c.15668A>G	p.Asn5223Ser	p.N5223S	ENST00000301067	NM_003482.3	5223	aAt/aGt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866356	37866356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032439-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			590	68	550	0	ENST00000269571.5:c.661G>T	p.Ala221Ser	p.A221S	ENST00000269571		221	Gcc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	131	544	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	440	650	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	114	229	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	141	500	0	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134823	41134823	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	525	475	0	ENST00000379561.5:c.805C>T	p.Arg269Ter	p.R269*	ENST00000379561	NM_002015.3	269	Cga/Tga																																																																														
INPP4A	3631	MSKCC	GRCh37	2	99182213	99182213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	196	571	0	ENST00000074304.5:c.2278G>A	p.Val760Ile	p.V760I	ENST00000074304	NM_001134224.1	760	Gtc/Atc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391103	89391103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	167	621	3	ENST00000336596.2:c.1169C>A	p.Thr390Asn	p.T390N	ENST00000336596	NM_005233.5	390	aCc/aAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859707	57859707	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	95	321	0	ENST00000228682.2:c.761A>G	p.His254Arg	p.H254R	ENST00000228682	NM_005269.2	254	cAc/cGc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1325332	1325332	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	149	445	0	ENST00000381566.1:c.343T>G	p.Tyr115Asp	p.Y115D	ENST00000381566		115	Tat/Gat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	124	656	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211517	46211545	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGCTTTCACTGTTATCTGGACTCCCAA	GGTGCTTTCACTGTTATCTGGACTCCCAA	-			P-0032442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	87	351	1	ENST00000334344.6:c.483_511del	p.Val162Ter	p.V162*	ENST00000334344	NM_152641.2	161	ttGGTGCTTTCACTGTTATCTGGACTCCCAAat/ttat																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440732	56440734	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0032442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	112	563	0	ENST00000407977.2:c.484_486del	p.Val162del	p.V162del	ENST00000407977		162	GTG/-																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440741	56440741	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	113	545	0	ENST00000407977.2:c.477G>C	p.Trp159Cys	p.W159C	ENST00000407977		159	tgG/tgC																																																																														
ESR1	2099	MSKCC	GRCh37	6	152129361	152129361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	42	422	0	ENST00000206249.3:c.314C>T	p.Pro105Leu	p.P105L	ENST00000206249	NM_000125.3	105	cCg/cTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0032444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	52	594	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94163078	94163078	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0032444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	37	390	2	ENST00000323929.3:c.2069A>G	p.Glu690Gly	p.E690G	ENST00000323929	NM_005591.3	690	gAg/gGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	142	538	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KDM5A	5927	MSKCC	GRCh37	12	431665	431665	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	44	485	0	ENST00000399788.2:c.2344C>T	p.Arg782Ter	p.R782*	ENST00000399788	NM_001042603.1	782	Cga/Tga																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36932064	36932064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	27	435	0	ENST00000361632.4:c.2405C>T	p.Thr802Ile	p.T802I	ENST00000361632		802	aCc/aTc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36938263	36938263	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138558210		P-0032445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	50	580	0	ENST00000361632.4:c.698G>A	p.Arg233Gln	p.R233Q	ENST00000361632		233	cGg/cAg																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612656	228612656	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	48	556	0	ENST00000366696.1:c.371A>G	p.Asp124Gly	p.D124G	ENST00000366696	NM_003493.2	124	gAc/gGc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178096108	178096108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	31	443	0	ENST00000397062.3:c.1223C>T	p.Ser408Leu	p.S408L	ENST00000397062	NM_006164.4	408	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	384	455	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	629	577	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66201815	66201815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	315	413	1	ENST00000273854.3:c.2687G>A	p.Arg896His	p.R896H	ENST00000273854	NM_004439.5	896	cGt/cAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29686011	29686011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	204	389	0	ENST00000358273.4:c.8138G>A	p.Arg2713Gln	p.R2713Q	ENST00000358273	NM_001042492.2	2713	cGg/cAg																																																																														
MED12	9968	MSKCC	GRCh37	X	70339328	70339328	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	280	395	0	ENST00000374080.3:c.204+1G>A		p.X68_splice	ENST00000374080		68																																																																															
TP53	7157	MSKCC	GRCh37	17	7577587	7577587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	382	539	0	ENST00000269305.4:c.694A>T	p.Ile232Phe	p.I232F	ENST00000269305	NM_001126112.2	232	Atc/Ttc																																																																														
INHA	3623	MSKCC	GRCh37	2	220439769	220439769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	114	640	0	ENST00000243786.2:c.622C>T	p.Arg208Trp	p.R208W	ENST00000243786	NM_002191.3	208	Cgg/Tgg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746055	162746056	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	113	374	0	ENST00000367921.3:c.2178_2179delinsTT	p.Ala727Ser	p.A727S	ENST00000367921	NM_006182.2	726	atAGct/atTTct																																																																														
RFWD2	64326	MSKCC	GRCh37	1	176012328	176012328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	149	383	0	ENST00000367669.3:c.1606G>A	p.Ala536Thr	p.A536T	ENST00000367669	NM_022457.5	536	Gca/Aca																																																																														
FLT1	2321	MSKCC	GRCh37	13	29005335	29005335	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	96	651	0	ENST00000282397.4:c.926A>G	p.Tyr309Cys	p.Y309C	ENST00000282397	NM_002019.4	309	tAt/tGt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602263	10602276	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTGTGGTGGATG	TGTTGTGGTGGATG	-			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	302	542	0	ENST00000171111.5:c.1302_1315del	p.Cys434TrpfsTer6	p.C434Wfs*6	ENST00000171111	NM_203500.1	434	tgCATCCACCACAACAgt/tggt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198264976	198264976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	67	343	0	ENST00000335508.6:c.2901G>T	p.Glu967Asp	p.E967D	ENST00000335508	NM_012433.2	967	gaG/gaT																																																																														
IDH1	3417	MSKCC	GRCh37	2	209116272	209116272	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	58	260	0	ENST00000345146.2:c.4T>G	p.Ser2Ala	p.S2A	ENST00000345146	NM_005896.2	2	Tcc/Gcc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022479	31022479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	43	227	0	ENST00000375687.4:c.1964C>A	p.Thr655Asn	p.T655N	ENST00000375687	NM_015338.5	655	aCc/aAc																																																																														
ICOSLG	23308	MSKCC	GRCh37	21	45656908	45656908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	86	581	0	ENST00000407780.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000407780	NM_001283052.1	83	cGa/cAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47147546	47147546	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	138	422	0	ENST00000409792.3:c.4780A>T	p.Lys1594Ter	p.K1594*	ENST00000409792	NM_014159.6	1594	Aag/Tag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89156968	89156968	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	91	443	0	ENST00000336596.2:c.71del	p.Pro24ArgfsTer59	p.P24Rfs*59	ENST00000336596	NM_005233.5	24	Ccg/cg																																																																														
FOXL2	668	MSKCC	GRCh37	3	138664690	138664690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	179	79	0	ENST00000330315.3:c.875C>T	p.Pro292Leu	p.P292L	ENST00000330315	NM_023067.3	292	cCg/cTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55955575	55955575	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	225	550	0	ENST00000263923.4:c.3370A>G	p.Arg1124Gly	p.R1124G	ENST00000263923	NM_002253.2	1124	Aga/Gga																																																																														
RASA1	5921	MSKCC	GRCh37	5	86564675	86564675	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	108	655	0	ENST00000274376.6:c.407C>G	p.Pro136Arg	p.P136R	ENST00000274376	NM_002890.2	136	cCt/cGt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15366939	15366939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	193	810	3	ENST00000263377.2:c.1687delA	p.Ser563AlafsTer21	p.S563Afs*21	ENST00000263377	NM_058243.2	563	Agc/gc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	122	440	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	187	711	0	ENST00000358487.5:c.1647T>G	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	147	577	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	115	609	0	ENST00000371953.3:c.395G>T	p.Gly132Val	p.G132V	ENST00000371953	NM_000314.4	132	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	72	723	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	172	511	0	ENST00000361445.4:c.5930C>T	p.Thr1977Ile	p.T1977I	ENST00000361445	NM_004958.3	1977	aCa/aTa																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123246935	123246935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113014479		P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	116	391	2	ENST00000358487.5:c.1990C>T	p.Arg664Trp	p.R664W	ENST00000358487	NM_000141.4	664	Cgg/Tgg																																																																														
HIST3H3	8290	MSKCC	GRCh37	1	228612911	228612911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	139	542	1	ENST00000366696.1:c.116C>T	p.Pro39Leu	p.P39L	ENST00000366696	NM_003493.2	39	cCg/cTg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65307280	65307283	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	128	374	0	ENST00000342505.4:c.2405_2408delAAGA	p.Lys802ArgfsTer11	p.K802Rfs*11	ENST00000342505	NM_002227.2	802	aAAGAg/ag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27057666	27057666	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	201	703	0	ENST00000324856.7:c.1377del	p.Ser460AlafsTer159	p.S460Afs*159	ENST00000324856	NM_006015.4	458	ggC/gg																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138200107	138200107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	128	460	1	ENST00000237289.4:c.1525G>A	p.Ala509Thr	p.A509T	ENST00000237289	NM_001270507.1	509	Gcc/Acc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	114	715	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11136097	11136097	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	188	574	0	ENST00000344626.4:c.3082-1G>A		p.X1028_splice	ENST00000344626	NM_003072.3	1028																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	221	892	3	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
BARD1	580	MSKCC	GRCh37	2	215645382	215645382	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	146	728	0	ENST00000260947.4:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000260947	NM_000465.2	406	Cga/Tga																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825518	50825519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	51	525	2	ENST00000398568.2:c.2156dup	p.Asn719LysfsTer2	p.N719Kfs*2	ENST00000398568	NM_001042412.1	717	gaa/gAaa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56490839	56490839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	188	509	0	ENST00000267101.3:c.2285C>T	p.Ala762Val	p.A762V	ENST00000267101	NM_001982.3	762	gCc/gTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89690848	89690848	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	54	382	0	ENST00000371953.3:c.253+2T>G		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
PGR	5241	MSKCC	GRCh37	11	100998799	100998799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	154	647	0	ENST00000325455.5:c.1003del	p.Ala335LeufsTer21	p.A335Lfs*21	ENST00000325455	NM_001202474.3	335	Gct/ct																																																																														
POLE	5426	MSKCC	GRCh37	12	133218333	133218333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	221	760	0	ENST00000320574.5:c.5278G>A	p.Val1760Met	p.V1760M	ENST00000320574	NM_006231.2	1760	Gtg/Atg																																																																														
TSC2	7249	MSKCC	GRCh37	16	2135255	2135255	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	260	876	1	ENST00000219476.3:c.4594C>T	p.Gln1532Ter	p.Q1532*	ENST00000219476	NM_000548.3	1532	Cag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67655389	67655390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	141	655	0	ENST00000264010.4:c.1255dup	p.Ser419LysfsTer25	p.S419Kfs*25	ENST00000264010	NM_006565.3	418	caa/cAaa																																																																														
AXL	558	MSKCC	GRCh37	19	41744434	41744434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	190	779	0	ENST00000301178.4:c.1054C>T	p.His352Tyr	p.H352Y	ENST00000301178	NM_021913.4	352	Cat/Tat																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66286160	66286160	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	46	386	0	ENST00000273854.3:c.1526A>T	p.Lys509Met	p.K509M	ENST00000273854	NM_004439.5	509	aAg/aTg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100044	157100049	+	inframe_deletion	In_Frame_Del	DEL	AGGAGC	AGGAGC	-			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	12	100	0	ENST00000346085.5:c.992_997del	p.Ala331_Gly332del	p.A331_G332del	ENST00000346085	NM_020732.3	327	ggAGGAGCa/gga																																																																														
CD274	29126	MSKCC	GRCh37	9	5457088	5457088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	32	301	0	ENST00000381577.3:c.62T>C	p.Val21Ala	p.V21A	ENST00000381577	NM_014143.3	21	gTc/gCc																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128420079	128420079	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	114	639	0	ENST00000265960.3:c.350-1G>A		p.X117_splice	ENST00000265960	NM_001006617.1	117																																																																															
TP53	7157	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	117	644	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	65	327	0				ENST00000310581	NM_198253.2																																																																																
VEGFA	7422	MSKCC	GRCh37	6	43749791	43749791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	58	409	0	ENST00000523873.1:c.644C>T	p.Ala215Val	p.A215V	ENST00000523873		215	gCg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	42	304	0				ENST00000310581	NM_198253.2																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	50	547	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416941	416941	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	65	412	0	ENST00000399788.2:c.3609G>A	p.Trp1203Ter	p.W1203*	ENST00000399788	NM_001042603.1	1203	tgG/tgA																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212402	5212402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	111	668	0	ENST00000357368.4:c.4715G>A	p.Arg1572Gln	p.R1572Q	ENST00000357368	NM_002850.3	1572	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	410	715	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SMO	6608	MSKCC	GRCh37	7	128845086	128845086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1600	141	658	0	ENST00000249373.3:c.580G>A	p.Glu194Lys	p.E194K	ENST00000249373	NM_005631.4	194	Gaa/Aaa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185191448	185191448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	114	639	1	ENST00000265026.3:c.2329G>A	p.Glu777Lys	p.E777K	ENST00000265026	NM_004721.4	777	Gaa/Aaa																																																																														
RB1	5925	MSKCC	GRCh37	13	48881511	48881511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	144	364	0	ENST00000267163.4:c.233G>A	p.Trp78Ter	p.W78*	ENST00000267163	NM_000321.2	78	tGg/tAg																																																																														
MCL1	4170	MSKCC	GRCh37	1	150549885	150549885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	73	341	0	ENST00000369026.2:c.1019G>C	p.Gly340Ala	p.G340A	ENST00000369026	NM_021960.4	340	gGa/gCa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948248	71948248	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	130	814	0	ENST00000298229.2:c.2960A>G	p.Tyr987Cys	p.Y987C	ENST00000298229	NM_001567.3	987	tAc/tGc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880991	37880992	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCGTGGCTGGTG			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	339	692	0	ENST00000269571.5:c.2324_2325insCAGCGTGGCTGGTGTGGC	p.Ala775_Gly776insSerValAlaGlyValAla	p.A775_G776insSVAGVA	ENST00000269571		774	atg/aTGGCCAGCGTGGCTGGTGtg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484852	57484852	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	74	432	0	ENST00000371085.3:c.832A>C	p.Asn278His	p.N278H	ENST00000371085	NM_000516.4	278	Aac/Cac																																																																														
TSC1	7248	MSKCC	GRCh37	9	135786896	135786896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	172	406	0	ENST00000298552.3:c.973C>T	p.Gln325Ter	p.Q325*	ENST00000298552	NM_001162426.1	325	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	226	610	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5215339	5215339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114545401		P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	121	531	0	ENST00000357368.4:c.4279G>A	p.Ala1427Thr	p.A1427T	ENST00000357368	NM_002850.3	1427	Gcc/Acc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482369	56482369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	239	560	2	ENST00000267101.3:c.917C>G	p.Pro306Arg	p.P306R	ENST00000267101	NM_001982.3	306	cCt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	150	458	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3828054	3828054	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	109	557	1	ENST00000262367.5:c.2071C>T	p.Gln691Ter	p.Q691*	ENST00000262367	NM_004380.2	691	Cag/Tag																																																																														
SPEN	23013	MSKCC	GRCh37	1	16261131	16261131	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	86	360	1	ENST00000375759.3:c.8396A>T	p.Asp2799Val	p.D2799V	ENST00000375759	NM_015001.2	2799	gAc/gTc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161906	47161907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	160	408	1	ENST00000409792.3:c.4219dup	p.Arg1407LysfsTer8	p.R1407Kfs*8	ENST00000409792	NM_014159.6	1407	agg/aAgg																																																																														
APC	324	MSKCC	GRCh37	5	112175558	112175558	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	213	250	4	ENST00000257430.4:c.4267del	p.Leu1423PhefsTer50	p.L1423Ffs*50	ENST00000257430	NM_000038.5	1423	Ctt/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0032467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	98	685	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	46	459	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	46	459	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	49	226	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	46	459	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
MTOR	2475	MSKCC	GRCh37	1	11300486	11300486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	84	693	0	ENST00000361445.4:c.1660C>T	p.His554Tyr	p.H554Y	ENST00000361445	NM_004958.3	554	Cac/Tac																																																																														
HOXB13	10481	MSKCC	GRCh37	17	46804303	46804303	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	84	632	0	ENST00000290295.7:c.704A>C	p.Tyr235Ser	p.Y235S	ENST00000290295	NM_006361.5	235	tAt/tCt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468442	89468442	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	56	351	0	ENST00000336596.2:c.1976A>C	p.Tyr659Ser	p.Y659S	ENST00000336596	NM_005233.5	659	tAc/tCc																																																																														
SDHA	6389	MSKCC	GRCh37	5	226022	226065	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGG	AGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGG	-			P-0032476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	18	96	0	ENST00000264932.6:c.482_525del	p.Ser161ThrfsTer19	p.S161Tfs*19	ENST00000264932	NM_004168.2	161	AGCAGAACTGAAGATGGGAAGATTTATCAGCGTGCATTTGGTGGa/a																																																																														
MET	4233	MSKCC	GRCh37	7	116412039	116412057	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAAGGTATATTTCAGTTT	AGAAGGTATATTTCAGTTT	-			P-0032476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	130	900	0	ENST00000397752.3:c.3025_3028+15del		p.X1009_splice	ENST00000397752	NM_000245.2	1009																																																																															
TP53	7157	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	88	737	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579356	7579356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	109	625	0	ENST00000269305.4:c.331C>A	p.Leu111Met	p.L111M	ENST00000269305	NM_001126112.2	111	Ctg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431943	49431943	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	113	809	0	ENST00000301067.7:c.9196T>G	p.Phe3066Val	p.F3066V	ENST00000301067	NM_003482.3	3066	Ttc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578545	7578546	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0032478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	89	760	3	ENST00000269305.4:c.384_385delinsCT	p.Ala129Ser	p.A129S	ENST00000269305	NM_001126112.2	128	ccTGcc/ccCTcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	119	361	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	91	328	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	65	624	1	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0032483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	92	332	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0032483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	145	443	4	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087533	27087533	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	241	708	0	ENST00000324856.7:c.2109del	p.Ala704ProfsTer38	p.A704Pfs*38	ENST00000324856	NM_006015.4	703	Ccc/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15311650	15311650	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	16	48	0	ENST00000263388.2:c.67C>G	p.Pro23Ala	p.P23A	ENST00000263388	NM_000435.2	23	Ccc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0032493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	186	623	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115383	115115383	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0032493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	126	554	0	ENST00000257566.3:c.941+2T>A		p.X314_splice	ENST00000257566	NM_016569.3	314																																																																															
ATRX	546	MSKCC	GRCh37	X	76909677	76909680	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0032493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	119	258	0	ENST00000373344.5:c.4225_4228delAAAG	p.Lys1409GlnfsTer80	p.K1409Qfs*80	ENST00000373344	NM_000489.3	1409	AAAGca/ca																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	142	659	7	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	45	449	4	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	132	340	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	100	327	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	102	391	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	114	625	10	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	113	521	2	ENST00000396946.4:c.1663dupC	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																														
RB1	5925	MSKCC	GRCh37	13	48878069	48878069	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	32	91	0	ENST00000267163.4:c.25del	p.Thr9ArgfsTer56	p.T9Rfs*56	ENST00000267163	NM_000321.2	7	cgA/cg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3900884	3900884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	181	611	0	ENST00000262367.5:c.212C>T	p.Ser71Leu	p.S71L	ENST00000262367	NM_004380.2	71	tCg/tTg																																																																														
SPEN	23013	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	46	414	0	ENST00000375759.3:c.3154delA	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	118	498	1	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	84	322	1	ENST00000268489.5:c.2287dupG	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	63	673	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
BIRC3	330	MSKCC	GRCh37	11	102196076	102196076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	119	428	1	ENST00000263464.3:c.836C>T	p.Ala279Val	p.A279V	ENST00000263464	NM_001165.4	279	gCg/gTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	22	193	1	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088770	27088770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	72	571	1	ENST00000324856.7:c.2382del	p.Ser795AlafsTer38	p.S795Afs*38	ENST00000324856	NM_006015.4	793	atG/at																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	163	556	0	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	40	508	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	173	614	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24134057	24134057	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	72	338	0	ENST00000263121.7:c.214del	p.Thr72GlnfsTer13	p.T72Qfs*13	ENST00000263121	NM_003073.3	70	Aaa/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49437711	49437713	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	190	693	0	ENST00000301067.7:c.5257_5259del	p.Lys1753del	p.K1753del	ENST00000301067	NM_003482.3	1753	AAG/-																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38146051	38146051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	235	763	0	ENST00000317025.8:c.3455C>T	p.Thr1152Met	p.T1152M	ENST00000317025	NM_023034.1	1152	aCg/aTg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852113	63852113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	54	498	0	ENST00000279873.7:c.2891G>T	p.Gly964Val	p.G964V	ENST00000279873	NM_032199.2	964	gGc/gTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720873	89720884	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGGTCAGTTAA	AAGGTCAGTTAA	-			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	30	287	0	ENST00000371953.3:c.1025_1026+10del		p.X342_splice	ENST00000371953	NM_000314.4	342																																																																															
KDM5A	5927	MSKCC	GRCh37	12	402304	402304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	187	568	1	ENST00000399788.2:c.4487T>C	p.Val1496Ala	p.V1496A	ENST00000399788	NM_001042603.1	1496	gTg/gCg																																																																														
RB1	5925	MSKCC	GRCh37	13	48954341	48954341	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	130	428	0	ENST00000267163.4:c.1462G>C	p.Ala488Pro	p.A488P	ENST00000267163	NM_000321.2	488	Gcg/Ccg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060967	38060967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	98	332	0	ENST00000250448.2:c.1022C>T	p.Thr341Met	p.T341M	ENST00000250448	NM_004496.3	341	aCg/aTg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40474342	40474342	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	168	513	1	ENST00000264657.5:c.2059T>C	p.Cys687Arg	p.C687R	ENST00000264657	NM_139276.2	687	Tgt/Cgt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532673	63532673	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	124	506	1	ENST00000307078.5:c.1908-2A>G		p.X636_splice	ENST00000307078	NM_004655.3	636																																																																															
PIK3R2	5296	MSKCC	GRCh37	19	18277940	18277940	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	103	381	1	ENST00000222254.8:c.1560G>T	p.Arg520Ser	p.R520S	ENST00000222254	NM_005027.3	520	agG/agT																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223951	36223952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	114	727	0	ENST00000222270.7:c.6505dup	p.Ala2169GlyfsTer14	p.A2169Gfs*14	ENST00000222270	NM_014727.1	2167	-/G																																																																														
AKT2	208	MSKCC	GRCh37	19	40747858	40747858	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	121	606	0	ENST00000392038.2:c.560T>G	p.Val187Gly	p.V187G	ENST00000392038	NM_001626.4	187	gTc/gGc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45871887	45871887	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	136	515	0	ENST00000391945.4:c.360+1G>A		p.X120_splice	ENST00000391945	NM_000400.3	120																																																																															
EPAS1	2034	MSKCC	GRCh37	2	46605215	46605215	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	45	281	7	ENST00000263734.3:c.1432A>T	p.Ser478Cys	p.S478C	ENST00000263734	NM_001430.4	478	Agc/Tgc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38943038	38943038	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	101	366	0	ENST00000357387.3:c.4949T>C	p.Ile1650Thr	p.I1650T	ENST00000357387	NM_152756.3	1650	aTa/aCa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591070	67591070	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	52	284	0	ENST00000274335.5:c.1663G>T	p.Glu555Ter	p.E555*	ENST00000274335		555	Gag/Tag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591129	67591130	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATC			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	80	335	0	ENST00000274335.5:c.1723_1724insTCA	p.Arg574_Lys575insIle	p.R574_K575insI	ENST00000274335		574	-/ATC																																																																														
FLT4	2324	MSKCC	GRCh37	5	180053225	180053225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	64	743	2	ENST00000261937.6:c.1144C>T	p.His382Tyr	p.H382Y	ENST00000261937	NM_182925.4	382	Cat/Tat																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778195	27778195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	29	554	0	ENST00000369163.2:c.344C>A	p.Ala115Asp	p.A115D	ENST00000369163	NM_003536.2	115	gCc/gAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100310	157100310	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	11	171	0	ENST00000346085.5:c.1250del	p.Pro417ArgfsTer13	p.P417Rfs*13	ENST00000346085	NM_020732.3	416	aCc/ac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859859	151859859	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	128	401	1	ENST00000262189.6:c.10803del	p.Lys3604ArgfsTer26	p.K3604Rfs*26	ENST00000262189	NM_170606.2	3601	aaA/aa																																																																														
PREX2	80243	MSKCC	GRCh37	8	69046467	69046467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	77	567	0	ENST00000288368.4:c.3940G>A	p.Ala1314Thr	p.A1314T	ENST00000288368	NM_024870.2	1314	Gca/Aca																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0032503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	22	688	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
RIT1	6016	MSKCC	GRCh37	1	155880256	155880256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	249	348	0	ENST00000368323.3:c.148C>A	p.His50Asn	p.H50N	ENST00000368323	NM_006912.5	50	Cat/Aat																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2223520	2223520	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	127	658	0	ENST00000326181.6:c.1051C>G	p.Leu351Val	p.L351V	ENST00000326181	NM_032271.2	351	Ctc/Gtc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286812	212286812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	77	329	0	ENST00000342788.4:c.2884G>A	p.Asp962Asn	p.D962N	ENST00000342788	NM_005235.2	962	Gac/Aac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879337	151879337	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	75	365	0	ENST00000262189.6:c.5608C>G	p.Gln1870Glu	p.Q1870E	ENST00000262189	NM_170606.2	1870	Cag/Gag																																																																														
DUSP4	1846	MSKCC	GRCh37	8	29207472	29207472	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0032503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	68	408	0	ENST00000240100.2:c.324C>G	p.Tyr108Ter	p.Y108*	ENST00000240100	NM_001394.6	108	taC/taG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	66	407	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0032505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	53	477	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	32	281	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
BAP1	8314	MSKCC	GRCh37	3	52443864	52443864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	113	817	1	ENST00000460680.1:c.31G>A	p.Asp11Asn	p.D11N	ENST00000460680	NM_004656.3	11	Gac/Aac																																																																														
ATM	472	MSKCC	GRCh37	11	108122567	108122567	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	61	388	0	ENST00000278616.4:c.1611del	p.Ala538GlnfsTer5	p.A538Qfs*5	ENST00000278616	NM_000051.3	537	ccT/cc																																																																														
ATR	545	MSKCC	GRCh37	3	142215227	142215238	+	inframe_deletion	In_Frame_Del	DEL	TTCCACGTACAG	TTCCACGTACAG	-			P-0032505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	49	410	0	ENST00000350721.4:c.5863_5874del	p.Leu1955_Glu1958del	p.L1955_E1958del	ENST00000350721	NM_001184.3	1955	CTGTACGTGGAA/-																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30066813	30066813	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	123	294	1	ENST00000331968.5:c.2318T>A	p.Ile773Asn	p.I773N	ENST00000331968	NM_002742.2	773	aTc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0032513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	86	357	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CD	5293	MSKCC	GRCh37	1	9783226	9783226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	39	436	0	ENST00000377346.4:c.2470C>G	p.Leu824Val	p.L824V	ENST00000377346	NM_005026.3	824	Ctc/Gtc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89813048	89813051	+	frameshift_variant	Frame_Shift_Del	DEL	CGAC	CGAC	-			P-0032513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	41	561	0	ENST00000389301.3:c.3454_3457del	p.Val1152ThrfsTer13	p.V1152Tfs*13	ENST00000389301	NM_000135.2	1152	GTCGac/ac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602802	10602814	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTCGCAGTCGT	TGTTCGCAGTCGT	-			P-0032513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	144	836	0	ENST00000171111.5:c.764_776del	p.Tyr255CysfsTer18	p.Y255Cfs*18	ENST00000171111	NM_203500.1	255	tACGACTGCGAACAg/tg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50910603	50910603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	77	679	0	ENST00000440232.2:c.1706T>C	p.Leu569Pro	p.L569P	ENST00000440232	NM_002691.3	569	cTg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	92	686	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																														
STAT3	6774	MSKCC	GRCh37	17	40490814	40490814	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	57	300	0	ENST00000264657.5:c.485T>G	p.Met162Arg	p.M162R	ENST00000264657	NM_139276.2	162	aTg/aGg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151884469	151884469	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	43	287	0	ENST00000262189.6:c.4886T>C	p.Met1629Thr	p.M1629T	ENST00000262189	NM_170606.2	1629	aTg/aCg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50905524	50905524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1350	117	904	1	ENST00000440232.2:c.652C>T	p.Arg218Cys	p.R218C	ENST00000440232	NM_002691.3	218	Cgc/Tgc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151945469	151945469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1568	127	1119	0	ENST00000262189.6:c.2050C>T	p.Pro684Ser	p.P684S	ENST00000262189	NM_170606.2	684	Cct/Tct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	252	531	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	334	558	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12028657	12028657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	188	374	1	ENST00000353533.5:c.860G>A	p.Arg287His	p.R287H	ENST00000353533	NM_003010.3	287	cGc/cAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76937602	76937603	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	351	403	1	ENST00000373344.5:c.3145dupA	p.Ile1049AsnfsTer4	p.I1049Nfs*4	ENST00000373344	NM_000489.3	1049	ata/aAta																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98209390	98209390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	126	448	0	ENST00000331920.6:c.4148C>T	p.Pro1383Leu	p.P1383L	ENST00000331920	NM_000264.3	1383	cCg/cTg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2225564	2225564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	396	685	0	ENST00000326181.6:c.1567G>A	p.Val523Met	p.V523M	ENST00000326181	NM_032271.2	523	Gtg/Atg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15288417	15288417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	137	521	2	ENST00000263388.2:c.4322G>T	p.Arg1441Leu	p.R1441L	ENST00000263388	NM_000435.2	1441	cGc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	179	688	0	ENST00000269305.4:c.532C>G	p.His178Asp	p.H178D	ENST00000269305	NM_001126112.2	178	Cac/Gac																																																																														
TSC2	7249	MSKCC	GRCh37	16	2124241	2124241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	209	834	2	ENST00000219476.3:c.2396G>A	p.Arg799His	p.R799H	ENST00000219476	NM_000548.3	799	cGc/cAc																																																																														
RB1	5925	MSKCC	GRCh37	13	48939028	48939028	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0032521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	75	260	0	ENST00000267163.4:c.862-2A>T		p.X288_splice	ENST00000267163	NM_000321.2	288																																																																															
CREBBP	1387	MSKCC	GRCh37	16	3778209	3778209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	82	789	0	ENST00000262367.5:c.6839G>A	p.Gly2280Glu	p.G2280E	ENST00000262367	NM_004380.2	2280	gGg/gAg																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217398	7217398	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0032521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	151	561	1	ENST00000380728.2:c.397+1G>A		p.X133_splice	ENST00000380728		133																																																																															
EP300	2033	MSKCC	GRCh37	22	41573312	41573312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	71	803	0	ENST00000263253.7:c.5597C>G	p.Pro1866Arg	p.P1866R	ENST00000263253	NM_001429.3	1866	cCg/cGg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515399	149515399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	118	526	0	ENST00000261799.4:c.83A>G	p.Gln28Arg	p.Q28R	ENST00000261799	NM_002609.3	28	cAg/cGg																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38285906	38285906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	128	580	0	ENST00000425967.3:c.505T>C	p.Ser169Pro	p.S169P	ENST00000425967	NM_001174067.1	169	Tca/Cca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	355	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	672	906	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467823	50467823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	45	483	1	ENST00000331340.3:c.1058C>T	p.Pro353Leu	p.P353L	ENST00000331340	NM_006060.4	353	cCg/cTg																																																																														
ATR	545	MSKCC	GRCh37	3	142168389	142168389	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199948706		P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	102	505	0	ENST00000350721.4:c.7817G>A	p.Arg2606Gln	p.R2606Q	ENST00000350721	NM_001184.3	2606	cGa/cAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180043407	180043407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	341	866	0	ENST00000261937.6:c.3179G>A	p.Arg1060Gln	p.R1060Q	ENST00000261937	NM_182925.4	1060	cGg/cAg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598383	28598383	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	183	713	0	ENST00000253063.3:c.354+1G>A		p.X118_splice	ENST00000253063	NM_031459.4	118																																																																															
GATA3	2625	MSKCC	GRCh37	10	8100598	8100598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	121	717	0	ENST00000346208.3:c.572C>T	p.Pro191Leu	p.P191L	ENST00000346208		191	cCc/cTc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143130153	143130153	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	48	584	0	ENST00000262992.4:c.863A>G	p.Glu288Gly	p.E288G	ENST00000262992	NM_001101669.1	288	gAg/gGg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187584725	187584725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	60	420	0	ENST00000441802.2:c.3308C>T	p.Ser1103Phe	p.S1103F	ENST00000441802	NM_005245.3	1103	tCc/tTc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39074458	39074458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	348	520	0	ENST00000357387.3:c.22C>G	p.Arg8Gly	p.R8G	ENST00000357387	NM_152756.3	8	Cgc/Ggc																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910644	29910645	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	149	1045	0	ENST00000376809.5:c.185dup	p.Ser62ArgfsTer37	p.S62Rfs*37	ENST00000376809	NM_002116.7	62	agc/aGgc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31322895	31322896	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCT			P-0032523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	74	685	0	ENST00000412585.2:c.997_1000dup	p.Arg334LysfsTer25	p.R334Kfs*25	ENST00000412585	NM_005514.6	334	agg/aAGGAgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	337	497	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	337	497	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	337	497	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
DIS3	22894	MSKCC	GRCh37	13	73350221	73350221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	17	271	0	ENST00000377767.4:c.664G>C	p.Glu222Gln	p.E222Q	ENST00000377767	NM_014953.3	222	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578262	7578268	+	frameshift_variant	Frame_Shift_Del	DEL	CGGATAA	CGGATAA	-			P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	340	626	1	ENST00000269305.4:c.581_587del	p.Leu194GlnfsTer51	p.L194Qfs*51	ENST00000269305	NM_001126112.2	194	cTTATCCGa/ca																																																																														
NF1	4763	MSKCC	GRCh37	17	29686004	29686004	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	324	348	0	ENST00000358273.4:c.8132del	p.Leu2711CysfsTer28	p.L2711Cfs*28	ENST00000358273	NM_001042492.2	2711	Ttg/tg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59937165	59937165	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	192	286	0	ENST00000259008.2:c.197C>G	p.Ser66Cys	p.S66C	ENST00000259008	NM_032043.2	66	tCt/tGt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31020719	31020719	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	168	221	0	ENST00000375687.4:c.1016A>G	p.Gln339Arg	p.Q339R	ENST00000375687	NM_015338.5	339	cAg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	23	500	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	24	499	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
CBL	867	MSKCC	GRCh37	11	119144591	119144591	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	21	407	0	ENST00000264033.4:c.604T>C	p.Trp202Arg	p.W202R	ENST00000264033	NM_005188.3	202	Tgg/Cgg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58678217	58678217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	29	616	0	ENST00000305921.3:c.442G>T	p.Ala148Ser	p.A148S	ENST00000305921	NM_003620.3	148	Gct/Tct																																																																														
ALK	238	MSKCC	GRCh37	2	30143219	30143219	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	15	329	0	ENST00000389048.3:c.307G>T	p.Gly103Trp	p.G103W	ENST00000389048	NM_004304.4	103	Ggg/Tgg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149460458	149460458	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	22	718	1	ENST00000286301.3:c.179T>C	p.Leu60Pro	p.L60P	ENST00000286301	NM_005211.3	60	cTg/cCg																																																																														
FGFR4	2264	MSKCC	GRCh37	5	176523291	176523291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	23	621	0	ENST00000292408.4:c.1948C>A	p.Arg650Ser	p.R650S	ENST00000292408	NM_213647.1	650	Cgc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	161	590	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	25	499	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
ETV6	2120	MSKCC	GRCh37	12	12043879	12043879	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	38	411	0	ENST00000396373.4:c.1258A>T	p.Met420Leu	p.M420L	ENST00000396373	NM_001987.4	420	Atg/Ttg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211694	36211694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	53	599	2	ENST00000222270.7:c.1445G>T	p.Arg482Leu	p.R482L	ENST00000222270	NM_014727.1	482	cGg/cTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55971006	55971006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	50	668	0	ENST00000263923.4:c.1791G>C	p.Glu597Asp	p.E597D	ENST00000263923	NM_002253.2	597	gaG/gaC																																																																														
FAT1	2195	MSKCC	GRCh37	4	187518845	187518845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	27	458	0	ENST00000441802.2:c.12359G>T	p.Arg4120Met	p.R4120M	ENST00000441802	NM_005245.3	4120	aGg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0032537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	77	558	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47045025	47045025	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	116	859	0	ENST00000329236.7:c.2117A>T	p.His706Leu	p.H706L	ENST00000329236	NM_001204466.1	706	cAc/cTc																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152092	55152103	+	inframe_deletion	In_Frame_Del	DEL	GACATCATGCAT	GACATCATGCAT	-			P-0032539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	218	709	0	ENST00000257290.5:c.2526_2537del	p.Ile843_Asp846del	p.I843_D846del	ENST00000257290	NM_006206.4	842	GACATCATGCAT/-																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073997	8073997	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	44	494	0	ENST00000377482.5:c.662A>C	p.Asp221Ala	p.D221A	ENST00000377482	NM_018948.3	221	gAt/gCt																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8075630	8075630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	61	534	0	ENST00000377482.5:c.50C>A	p.Thr17Asn	p.T17N	ENST00000377482	NM_018948.3	17	aCt/aAt																																																																														
MTOR	2475	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	38	695	2	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																																																														
SPEN	23013	MSKCC	GRCh37	1	16254623	16254623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	45	607	0	ENST00000375759.3:c.1888C>T	p.Arg630Cys	p.R630C	ENST00000375759	NM_015001.2	630	Cgt/Tgt																																																																														
SDHB	6390	MSKCC	GRCh37	1	17350472	17350473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	43	562	0	ENST00000375499.3:c.637dup	p.Met213AsnfsTer9	p.M213Nfs*9	ENST00000375499	NM_003000.2	213	atg/aAtg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106355	27106355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	44	590	0	ENST00000324856.7:c.5966G>A	p.Arg1989Gln	p.R1989Q	ENST00000324856	NM_006015.4	1989	cGa/cAa																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72076716	72076716	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	38	530	0	ENST00000357731.5:c.781G>T	p.Glu261Ter	p.E261*	ENST00000357731	NM_173808.2	261	Gag/Tag																																																																														
NEGR1	257194	MSKCC	GRCh37	1	72748026	72748026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	41	598	0	ENST00000357731.5:c.152G>A	p.Arg51Lys	p.R51K	ENST00000357731	NM_173808.2	51	aGa/aAa																																																																														
FAM46C	54855	MSKCC	GRCh37	1	118166001	118166001	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147179158		P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	33	540	0	ENST00000369448.3:c.511G>A	p.Asp171Asn	p.D171N	ENST00000369448	NM_017709.3	171	Gac/Aac																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120480581	120480581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	41	582	0	ENST00000256646.2:c.3236T>C	p.Val1079Ala	p.V1079A	ENST00000256646	NM_024408.3	1079	gTt/gCt																																																																														
NOTCH2	4853	MSKCC	GRCh37	1	120491669	120491669	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	40	352	0	ENST00000256646.2:c.2560T>G	p.Phe854Val	p.F854V	ENST00000256646	NM_024408.3	854	Ttt/Gtt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156836757	156836757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	45	584	0	ENST00000524377.1:c.415T>C	p.Ser139Pro	p.S139P	ENST00000524377	NM_002529.3	139	Tcc/Ccc																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156837936	156837936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141629165		P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	46	694	1	ENST00000524377.1:c.469C>T	p.Arg157Cys	p.R157C	ENST00000524377	NM_002529.3	157	Cgc/Tgc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193091397	193091397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	31	411	0	ENST00000367435.3:c.67G>A	p.Asp23Asn	p.D23N	ENST00000367435	NM_024529.4	23	Gac/Aac																																																																														
AKT3	10000	MSKCC	GRCh37	1	243716094	243716094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	47	596	0	ENST00000263826.5:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000263826	NM_005465.4	367	cGa/cAa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852557	63852557	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	39	557	0	ENST00000279873.7:c.3335T>G	p.Leu1112Arg	p.L1112R	ENST00000279873	NM_032199.2	1112	cTt/cGt																																																																														
TET1	80312	MSKCC	GRCh37	10	70411605	70411605	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	21	348	0	ENST00000373644.4:c.4279C>T	p.Arg1427Ter	p.R1427*	ENST00000373644	NM_030625.2	1427	Cga/Tga																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625317	69625317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	57	658	0	ENST00000334134.2:c.476G>A	p.Gly159Asp	p.G159D	ENST00000334134	NM_005247.2	159	gGc/gAc																																																																														
PGR	5241	MSKCC	GRCh37	11	100922251	100922251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	28	454	0	ENST00000325455.5:c.2261C>A	p.Ser754Tyr	p.S754Y	ENST00000325455	NM_001202474.3	754	tCt/tAt																																																																														
PGR	5241	MSKCC	GRCh37	11	100922264	100922264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	25	419	0	ENST00000325455.5:c.2248C>T	p.Leu750Phe	p.L750F	ENST00000325455	NM_001202474.3	750	Ctc/Ttc																																																																														
ATM	472	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	43	593	1	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108203493	108203493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140263969		P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	25	299	0	ENST00000278616.4:c.7793G>A	p.Arg2598Gln	p.R2598Q	ENST00000278616	NM_000051.3	2598	cGa/cAa																																																																														
SDHD	6392	MSKCC	GRCh37	11	111958593	111958593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	61	570	0	ENST00000375549.3:c.65G>A	p.Arg22Gln	p.R22Q	ENST00000375549	NM_003002.3	22	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118368660	118368660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	38	415	0	ENST00000534358.1:c.5674C>T	p.Arg1892Cys	p.R1892C	ENST00000534358	NM_005933.3	1892	Cgt/Tgt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118373428	118373428	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	36	435	0	ENST00000534358.1:c.6821T>C	p.Val2274Ala	p.V2274A	ENST00000534358	NM_005933.3	2274	gTt/gCt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863433	57863433	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149817893		P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	31	593	0	ENST00000228682.2:c.1528C>T	p.Arg510Trp	p.R510W	ENST00000228682	NM_005269.2	510	Cgg/Tgg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864202	57864202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	36	560	0	ENST00000228682.2:c.1679C>T	p.Ser560Phe	p.S560F	ENST00000228682	NM_005269.2	560	tCc/tTc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120717	115120717	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	38	623	1	ENST00000257566.3:c.289G>T	p.Glu97Ter	p.E97*	ENST00000257566	NM_016569.3	97	Gaa/Taa																																																																														
POLE	5426	MSKCC	GRCh37	12	133226360	133226360	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201738371		P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	47	660	0	ENST00000320574.5:c.3698G>A	p.Arg1233Gln	p.R1233Q	ENST00000320574	NM_006231.2	1233	cGa/cAa																																																																														
POLE	5426	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	26	479	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
POLE	5426	MSKCC	GRCh37	12	133256623	133256623	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	20	493	0	ENST00000320574.5:c.340C>T	p.Arg114Ter	p.R114*	ENST00000320574	NM_006231.2	114	Cga/Tga																																																																														
FLT3	2322	MSKCC	GRCh37	13	28578253	28578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	59	550	0	ENST00000241453.7:c.2918G>T	p.Arg973Leu	p.R973L	ENST00000241453	NM_004119.2	973	cGa/cTa																																																																														
FLT3	2322	MSKCC	GRCh37	13	28589808	28589808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	37	493	0	ENST00000241453.7:c.2572G>A	p.Glu858Lys	p.E858K	ENST00000241453	NM_004119.2	858	Gaa/Aaa																																																																														
FLT1	2321	MSKCC	GRCh37	13	28893667	28893667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	25	387	0	ENST00000282397.4:c.3179G>A	p.Arg1060Gln	p.R1060Q	ENST00000282397	NM_002019.4	1060	cGa/cAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913823	32913823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	41	466	0	ENST00000380152.3:c.5331G>T	p.Lys1777Asn	p.K1777N	ENST00000380152		1777	aaG/aaT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32936691	32936691	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	27	470	0	ENST00000380152.3:c.7837A>C	p.Lys2613Gln	p.K2613Q	ENST00000380152		2613	Aag/Cag																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134998	41134998	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	19	331	0	ENST00000379561.5:c.631-1G>T		p.X211_splice	ENST00000379561	NM_002015.3	211																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103515141	103515141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	32	364	1	ENST00000355739.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000355739	NM_000123.3	548	Gaa/Aaa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103515302	103515302	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	30	373	0	ENST00000355739.4:c.1803A>C	p.Glu601Asp	p.E601D	ENST00000355739	NM_000123.3	601	gaA/gaC																																																																														
PRKD1	5587	MSKCC	GRCh37	14	30093456	30093456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	34	432	0	ENST00000331968.5:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000331968	NM_002742.2	603	Cgt/Tgt																																																																														
NKX2-1	7080	MSKCC	GRCh37	14	36987100	36987100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	45	551	1	ENST00000354822.5:c.589C>T	p.Leu197Phe	p.L197F	ENST00000354822	NM_001079668.2	197	Ctc/Ttc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95572489	95572489	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	34	460	0	ENST00000343455.3:c.2876A>C	p.Lys959Thr	p.K959T	ENST00000343455	NM_177438.2	959	aAa/aCa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95596406	95596406	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	30	357	0	ENST00000343455.3:c.562G>T	p.Glu188Ter	p.E188*	ENST00000343455	NM_177438.2	188	Gaa/Taa																																																																														
AKT1	207	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	16	524	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CBFB	865	MSKCC	GRCh37	16	67070635	67070635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	22	230	0	ENST00000412916.2:c.259G>A	p.Asp87Asn	p.D87N	ENST00000412916		87	Gac/Aac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993411	72993411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	42	729	0	ENST00000268489.5:c.634G>A	p.Asp212Asn	p.D212N	ENST00000268489	NM_006885.3	212	Gac/Aac																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81946288	81946288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	49	591	1	ENST00000359376.3:c.2021G>A	p.Arg674Gln	p.R674Q	ENST00000359376	NM_002661.3	674	cGa/cAa																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81953114	81953114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	27	358	0	ENST00000359376.3:c.2080C>T	p.Arg694Cys	p.R694C	ENST00000359376	NM_002661.3	694	Cgc/Tgc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89813297	89813297	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	32	476	0	ENST00000389301.3:c.3350G>T	p.Arg1117Ile	p.R1117I	ENST00000389301	NM_000135.2	1117	aGa/aTa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56434943	56434943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	70	628	1	ENST00000407977.2:c.2194C>T	p.Arg732Cys	p.R732C	ENST00000407977		732	Cgc/Tgc																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59821942	59821942	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	43	397	0	ENST00000259008.2:c.2108A>C	p.Lys703Thr	p.K703T	ENST00000259008	NM_032043.2	703	aAa/aCa																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63537626	63537626	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	38	623	0	ENST00000307078.5:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000307078	NM_004655.3	336	Gaa/Taa																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39570468	39570468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	18	351	0	ENST00000262039.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000262039	NM_002647.2	222	Cga/Tga																																																																														
PIK3C3	5289	MSKCC	GRCh37	18	39623696	39623696	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	18	328	0	ENST00000262039.4:c.2104-1G>T		p.X702_splice	ENST00000262039	NM_002647.2	702																																																																															
INSR	3643	MSKCC	GRCh37	19	7267653	7267653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	46	685	0	ENST00000302850.5:c.355G>A	p.Ala119Thr	p.A119T	ENST00000302850	NM_000208.2	119	Gcg/Acg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295174	15295174	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	52	827	0	ENST00000263388.2:c.2498T>G	p.Phe833Cys	p.F833C	ENST00000263388	NM_000435.2	833	tTc/tGc																																																																														
ALK	238	MSKCC	GRCh37	2	29940461	29940461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	21	345	0	ENST00000389048.3:c.770C>A	p.Ser257Tyr	p.S257Y	ENST00000389048	NM_004304.4	257	tCt/tAt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47635547	47635547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	41	368	2	ENST00000233146.2:c.219G>T	p.Lys73Asn	p.K73N	ENST00000233146	NM_000251.2	73	aaG/aaT																																																																														
MSH2	4436	MSKCC	GRCh37	2	47703539	47703539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	48	604	0	ENST00000233146.2:c.2039G>A	p.Arg680Gln	p.R680Q	ENST00000233146	NM_000251.2	680	cGa/cAa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48026224	48026224	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	22	423	0	ENST00000234420.5:c.1102G>T	p.Glu368Ter	p.E368*	ENST00000234420	NM_000179.2	368	Gaa/Taa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61711210	61711210	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	35	446	0	ENST00000401558.2:c.2539A>C	p.Asn847His	p.N847H	ENST00000401558	NM_003400.3	847	Aac/Cac																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128038130	128038130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	32	504	0	ENST00000285398.2:c.1420G>T	p.Asp474Tyr	p.D474Y	ENST00000285398	NM_000122.1	474	Gat/Tat																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128044527	128044527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	42	566	1	ENST00000285398.2:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000285398	NM_000122.1	365	gGc/gAc																																																																														
PMS1	5378	MSKCC	GRCh37	2	190742103	190742103	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	21	505	0	ENST00000441310.2:c.2740G>T	p.Glu914Ter	p.E914*	ENST00000441310	NM_000534.4	914	Gag/Tag																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212295755	212295755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	43	620	0	ENST00000342788.4:c.2558C>A	p.Ser853Tyr	p.S853Y	ENST00000342788	NM_005235.2	853	tCt/tAt																																																																														
BARD1	580	MSKCC	GRCh37	2	215646149	215646149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	42	567	0	ENST00000260947.4:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000260947	NM_000465.2	150	cGa/cAa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225376235	225376235	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	26	530	0	ENST00000264414.4:c.719G>T	p.Arg240Ile	p.R240I	ENST00000264414	NM_003590.4	240	aGa/aTa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39690084	39690084	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	21	289	0	ENST00000361337.2:c.109G>T	p.Glu37Ter	p.E37*	ENST00000361337	NM_003286.2	37	Gaa/Taa																																																																														
TOP1	7150	MSKCC	GRCh37	20	39745020	39745020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	29	560	0	ENST00000361337.2:c.1810G>A	p.Glu604Lys	p.E604K	ENST00000361337	NM_003286.2	604	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40770576	40770576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	38	547	0	ENST00000373198.4:c.2806C>T	p.Arg936Ter	p.R936*	ENST00000373198	NM_133170.3	936	Cga/Tga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57466870	57466870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	14	230	0	ENST00000371085.3:c.89T>G	p.Leu30Arg	p.L30R	ENST00000371085	NM_000516.4	30	cTg/cGg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	29	508	0	ENST00000349496.5:c.1004A>C	p.Lys335Thr	p.K335T	ENST00000349496	NM_001904.3	335	aAa/aCa																																																																														
MITF	4286	MSKCC	GRCh37	3	70014076	70014076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	43	545	1	ENST00000352241.4:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000352241	NM_198159.2	414	Cgg/Tgg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89457278	89457278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	48	470	0	ENST00000336596.2:c.1759C>T	p.His587Tyr	p.H587Y	ENST00000336596	NM_005233.5	587	Cat/Tat																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468357	89468357	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	11	213	0	ENST00000336596.2:c.1891G>T	p.Glu631Ter	p.E631*	ENST00000336596	NM_005233.5	631	Gaa/Taa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89480466	89480466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	22	422	0	ENST00000336596.2:c.2303C>T	p.Ser768Leu	p.S768L	ENST00000336596	NM_005233.5	768	tCg/tTg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	35	406	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																																																														
ATR	545	MSKCC	GRCh37	3	142178199	142178199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	20	357	0	ENST00000350721.4:c.7219C>T	p.Arg2407Cys	p.R2407C	ENST00000350721	NM_001184.3	2407	Cgc/Tgc																																																																														
ATR	545	MSKCC	GRCh37	3	142281186	142281186	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	40	442	0	ENST00000350721.4:c.1058T>C	p.Phe353Ser	p.F353S	ENST00000350721	NM_001184.3	353	tTc/tCc																																																																														
WWTR1	25937	MSKCC	GRCh37	3	149243898	149243898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	31	550	0	ENST00000360632.3:c.920C>T	p.Ser307Leu	p.S307L	ENST00000360632	NM_015472.4	307	tCg/tTg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181377	185181377	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	29	345	0	ENST00000265026.3:c.1318A>G	p.Ile440Val	p.I440V	ENST00000265026	NM_004721.4	440	Atc/Gtc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356406	66356406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	34	421	1	ENST00000273854.3:c.1091C>T	p.Ala364Val	p.A364V	ENST00000273854	NM_004439.5	364	gCc/gTc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143029297	143029297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	34	375	0	ENST00000262992.4:c.2323G>A	p.Glu775Lys	p.E775K	ENST00000262992	NM_001101669.1	775	Gaa/Aaa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143352352	143352352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150489920		P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	37	665	0	ENST00000262992.4:c.61G>A	p.Ala21Thr	p.A21T	ENST00000262992	NM_001101669.1	21	Gcc/Acc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	43	522	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	40	477	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31449442	31449442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	45	587	0	ENST00000344624.3:c.2767C>T	p.Arg923Trp	p.R923W	ENST00000344624		923	Cgg/Tgg																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950689	38950689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	23	405	0	ENST00000357387.3:c.3261C>A	p.Phe1087Leu	p.F1087L	ENST00000357387	NM_152756.3	1087	ttC/ttA																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522740	67522741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	22	255	0	ENST00000274335.5:c.244dupA	p.Ile82AsnfsTer24	p.I82Nfs*24	ENST00000274335		79	-/A																																																																														
MSH3	4437	MSKCC	GRCh37	5	79961018	79961018	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	51	560	0	ENST00000265081.6:c.415G>T	p.Glu139Ter	p.E139*	ENST00000265081	NM_002439.4	139	Gaa/Taa																																																																														
MSH3	4437	MSKCC	GRCh37	5	80064749	80064749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148896355		P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	28	494	0	ENST00000265081.6:c.2180G>A	p.Arg727Gln	p.R727Q	ENST00000265081	NM_002439.4	727	cGa/cAa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670680	86670680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	14	322	0	ENST00000274376.6:c.1958G>T	p.Arg653Ile	p.R653I	ENST00000274376	NM_002890.2	653	aGa/aTa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86670721	86670721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	12	233	0	ENST00000274376.6:c.1999G>T	p.Asp667Tyr	p.D667Y	ENST00000274376	NM_002890.2	667	Gat/Tat																																																																														
HIST1H3C	8352	MSKCC	GRCh37	6	26045858	26045858	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	44	503	0	ENST00000540144.1:c.220G>T	p.Glu74Ter	p.E74*	ENST00000540144	NM_003531.2	74	Gaa/Taa																																																																														
MDC1	9656	MSKCC	GRCh37	6	30673064	30673064	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144657716		P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	46	699	1	ENST00000376406.3:c.3896G>A	p.Arg1299Gln	p.R1299Q	ENST00000376406	NM_014641.2	1299	cGa/cAa																																																																														
DAXX	1616	MSKCC	GRCh37	6	33288366	33288366	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	23	446	0	ENST00000374542.5:c.1042G>A	p.Val348Ile	p.V348I	ENST00000374542	NM_001141970.1	348	Gtt/Att																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93973581	93973581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	32	371	0	ENST00000369303.4:c.1795C>A	p.His599Asn	p.H599N	ENST00000369303	NM_004440.3	599	Cat/Aat																																																																														
SESN1	27244	MSKCC	GRCh37	6	109314067	109314067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	25	566	0	ENST00000436639.2:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000436639	NM_014454.2	386	Cgt/Tgt																																																																														
FYN	2534	MSKCC	GRCh37	6	111983108	111983108	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	35	503	1	ENST00000368678.4:c.1439A>G	p.Tyr480Cys	p.Y480C	ENST00000368678		480	tAc/tGc																																																																														
ROS1	6098	MSKCC	GRCh37	6	117674297	117674297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	48	598	0	ENST00000368508.3:c.4177G>T	p.Asp1393Tyr	p.D1393Y	ENST00000368508	NM_002944.2	1393	Gat/Tat																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265323	152265323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	18	346	0	ENST00000206249.3:c.776G>A	p.Arg259Gln	p.R259Q	ENST00000206249	NM_000125.3	259	cGa/cAa																																																																														
EZH2	2146	MSKCC	GRCh37	7	148526850	148526850	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	49	500	0	ENST00000320356.2:c.454A>C	p.Asn152His	p.N152H	ENST00000320356	NM_004456.4	152	Aat/Cat																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151860908	151860908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	55	451	2	ENST00000262189.6:c.9754C>T	p.Arg3252Cys	p.R3252C	ENST00000262189	NM_170606.2	3252	Cgt/Tgt																																																																														
PREX2	80243	MSKCC	GRCh37	8	69031690	69031690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	43	548	0	ENST00000288368.4:c.3445C>T	p.Arg1149Cys	p.R1149C	ENST00000288368	NM_024870.2	1149	Cgc/Tgc																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70967540	70967540	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	48	553	0	ENST00000276594.2:c.1483A>G	p.Thr495Ala	p.T495A	ENST00000276594	NM_024504.3	495	Act/Gct																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70971059	70971059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	55	656	0	ENST00000276594.2:c.1202G>T	p.Arg401Ile	p.R401I	ENST00000276594	NM_024504.3	401	aGa/aTa																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069038	5069038	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	18	293	0	ENST00000381652.3:c.1343A>C	p.Glu448Ala	p.E448A	ENST00000381652	NM_004972.3	448	gAa/gCa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8636794	8636794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	35	514	0	ENST00000356435.5:c.115G>A	p.Gly39Arg	p.G39R	ENST00000356435		39	Gga/Aga																																																																														
PAX5	5079	MSKCC	GRCh37	9	36846873	36846873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	33	461	1	ENST00000358127.4:c.1066G>A	p.Asp356Asn	p.D356N	ENST00000358127	NM_001280556.1	356	Gac/Aac																																																																														
FANCC	2176	MSKCC	GRCh37	9	98009789	98009789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	40	359	0	ENST00000289081.3:c.175A>G	p.Thr59Ala	p.T59A	ENST00000289081	NM_000136.2	59	Aca/Gca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231389	98231389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	57	650	0	ENST00000331920.6:c.1894G>A	p.Asp632Asn	p.D632N	ENST00000331920	NM_000264.3	632	Gac/Aac																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98242854	98242854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	35	420	2	ENST00000331920.6:c.763C>T	p.Arg255Trp	p.R255W	ENST00000331920	NM_000264.3	255	Cgg/Tgg																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933085	39933085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	52	765	0	ENST00000378444.4:c.1514C>A	p.Ala505Asp	p.A505D	ENST00000378444	NM_001123385.1	505	gCt/gAt																																																																														
ARAF	369	MSKCC	GRCh37	X	47426731	47426731	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	44	670	0	ENST00000377045.4:c.976C>T	p.Arg326Ter	p.R326*	ENST00000377045	NM_001654.4	326	Cga/Tga																																																																														
MED12	9968	MSKCC	GRCh37	X	70340905	70340905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	51	601	0	ENST00000374080.3:c.638G>A	p.Gly213Glu	p.G213E	ENST00000374080		213	gGg/gAg																																																																														
MED12	9968	MSKCC	GRCh37	X	70344662	70344662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	58	655	0	ENST00000374080.3:c.2023C>A	p.Leu675Ile	p.L675I	ENST00000374080		675	Ctc/Atc																																																																														
MED12	9968	MSKCC	GRCh37	X	70348535	70348535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	46	661	0	ENST00000374080.3:c.3442C>T	p.Arg1148Cys	p.R1148C	ENST00000374080		1148	Cgc/Tgc																																																																														
MED12	9968	MSKCC	GRCh37	X	70352988	70352988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	35	634	2	ENST00000374080.3:c.4543C>T	p.Arg1515Ter	p.R1515*	ENST00000374080		1515	Cga/Tga																																																																														
ATRX	546	MSKCC	GRCh37	X	76778843	76778843	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	42	650	1	ENST00000373344.5:c.6736G>T	p.Glu2246Ter	p.E2246*	ENST00000373344	NM_000489.3	2246	Gaa/Taa																																																																														
ATRX	546	MSKCC	GRCh37	X	76919037	76919038	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	18	358	0	ENST00000373344.5:c.3953dupA	p.Asn1318LysfsTer6	p.N1318Kfs*6	ENST00000373344	NM_000489.3	1318	aat/aaAt																																																																														
ATRX	546	MSKCC	GRCh37	X	76938218	76938218	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs142601264		P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	52	743	0	ENST00000373344.5:c.2530A>G	p.Thr844Ala	p.T844A	ENST00000373344	NM_000489.3	844	Aca/Gca																																																																														
ATRX	546	MSKCC	GRCh37	X	76938325	76938325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	29	713	0	ENST00000373344.5:c.2423G>A	p.Arg808Gln	p.R808Q	ENST00000373344	NM_000489.3	808	cGa/cAa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123215312	123215312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	44	600	0	ENST00000218089.9:c.2858G>A	p.Arg953Gln	p.R953Q	ENST00000218089	NM_001042749.1	953	cGa/cAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0032549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	81	400	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	97	213	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0032550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	41	413	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38957801	38957801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	54	371	0	ENST00000357387.3:c.2452C>G	p.Leu818Val	p.L818V	ENST00000357387	NM_152756.3	818	Ctg/Gtg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056498	26056498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	47	295	0	ENST00000343677.2:c.159G>T	p.Glu53Asp	p.E53D	ENST00000343677	NM_005319.3	53	gaG/gaT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157150470	157150470	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	57	545	0	ENST00000346085.5:c.1652G>C	p.Gly551Ala	p.G551A	ENST00000346085	NM_020732.3	551	gGc/gCc																																																																														
FGFR2	2263	MSKCC	GRCh37	10	123310909	123310929	+	inframe_deletion	In_Frame_Del	DEL	GTTGGCCGCAGGCACAGCATG	GTTGGCCGCAGGCACAGCATG	-			P-0032563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	287	670	2	ENST00000358487.5:c.499_519delCATGCTGTGCCTGCGGCCAAC	p.His167_Asn173del	p.H167_N173del	ENST00000358487	NM_000141.4	167	CATGCTGTGCCTGCGGCCAAC/-																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52651531	52651531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	148	609	0	ENST00000394830.3:c.1565G>A	p.Arg522Gln	p.R522Q	ENST00000394830	NM_018313.4	522	cGa/cAa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0032564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	21	297	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	43	711	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753233	42753233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	53	849	0	ENST00000222329.4:c.1031G>A	p.Arg344His	p.R344H	ENST00000222329	NM_006494.2	344	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	75	801	0	ENST00000269305.4:c.455C>G	p.Pro152Arg	p.P152R	ENST00000269305	NM_001126112.2	152	cCg/cGg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420493	49420493	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	77	622	0	ENST00000301067.7:c.15256C>T	p.Arg5086Ter	p.R5086*	ENST00000301067	NM_003482.3	5086	Cga/Tga																																																																														
RB1	5925	MSKCC	GRCh37	13	48934155	48934155	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	33	301	1	ENST00000267163.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000267163	NM_000321.2	204	Gaa/Taa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27087480	27087480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	75	666	0	ENST00000324856.7:c.2054C>G	p.Thr685Ser	p.T685S	ENST00000324856	NM_006015.4	685	aCc/aGc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32929126	32929126	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	67	426	0	ENST00000380152.3:c.7136G>C	p.Gly2379Ala	p.G2379A	ENST00000380152		2379	gGa/gCa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89371731	89371731	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	58	515	0	ENST00000301030.4:c.109A>T	p.Thr37Ser	p.T37S	ENST00000301030	NM_001256183.1	37	Acc/Tcc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138461563	138461563	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	90	475	0	ENST00000289153.2:c.458del	p.Arg153ProfsTer20	p.R153Pfs*20	ENST00000289153	NM_006219.2	153	cGc/cc																																																																														
KDR	3791	MSKCC	GRCh37	4	55987285	55987285	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	51	469	0	ENST00000263923.4:c.140N>A	p.Thr47Lys	p.T47K	ENST00000263923	NM_002253.2	47	aCa/aAa																																																																														
FLT4	2324	MSKCC	GRCh37	5	180046328	180046328	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	63	503	0	ENST00000261937.6:c.2686del	p.Glu896SerfsTer30	p.E896Sfs*30	ENST00000261937	NM_182925.4	896	Gag/ag																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975390	13975390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	50	403	0	ENST00000405192.2:c.497C>T	p.Pro166Leu	p.P166L	ENST00000405192	NM_001163147.1	166	cCa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	59	566	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RPS6KB2	6199	MSKCC	GRCh37	11	67202627	67202627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	51	595	0	ENST00000312629.5:c.1436G>A	p.Arg479His	p.R479H	ENST00000312629	NM_003952.2	479	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	54	391	0	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	23	423	0	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	79	566	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	24	148	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	81	856	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692981	89692982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	23	479	0	ENST00000371953.3:c.469dupG	p.Glu157GlyfsTer23	p.E157Gfs*23	ENST00000371953	NM_000314.4	155	-/G																																																																														
RNF43	54894	MSKCC	GRCh37	17	56436028	56436028	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	34	448	1	ENST00000407977.2:c.1109del	p.Pro370HisfsTer49	p.P370Hfs*49	ENST00000407977		370	cCa/ca																																																																														
RB1	5925	MSKCC	GRCh37	13	48881512	48881512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	28	310	0	ENST00000267163.4:c.234G>A	p.Trp78Ter	p.W78*	ENST00000267163	NM_000321.2	78	tgG/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1254594	1254594	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35719940		P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	78	617	1	ENST00000310581.5:c.3184G>A	p.Ala1062Thr	p.A1062T	ENST00000310581	NM_198253.2	1062	Gcc/Acc																																																																														
CSF3R	1441	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	20	754	4	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
PALB2	79728	MSKCC	GRCh37	16	23619228	23619228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201657283		P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	53	550	0	ENST00000261584.4:c.3307G>A	p.Val1103Met	p.V1103M	ENST00000261584	NM_024675.3	1103	Gtg/Atg																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265024	46265024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	17	504	0	ENST00000371998.3:c.1894C>T	p.Arg632Trp	p.R632W	ENST00000371998		632	Cgg/Tgg																																																																														
RAD51D	5892	MSKCC	GRCh37	17	33433425	33433425	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	83	647	1	ENST00000335858.7:c.220C>T	p.Arg74Ter	p.R74*	ENST00000335858	NM_133629.2	74	Cga/Tga																																																																														
CIC	23152	MSKCC	GRCh37	19	42798822	42798822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	118	783	1	ENST00000575354.2:c.4394G>A	p.Arg1465His	p.R1465H	ENST00000575354	NM_015125.3	1465	cGc/cAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89351871	89351871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	102	953	2	ENST00000301030.4:c.1079C>T	p.Pro360Leu	p.P360L	ENST00000301030	NM_001256183.1	360	cCg/cTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	442811	442811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	29	389	1	ENST00000399788.2:c.1495del	p.Glu499SerfsTer19	p.E499Sfs*19	ENST00000399788	NM_001042603.1	499	Gag/ag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	39	699	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737698	145737698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	64	713	0	ENST00000428558.2:c.3065G>A	p.Arg1022His	p.R1022H	ENST00000428558	NM_004260.3	1022	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49444960	49444960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	74	558	3	ENST00000301067.7:c.2506del	p.Gln836SerfsTer94	p.Q836Sfs*94	ENST00000301067	NM_003482.3	836	Cag/ag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71941265	71941265	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144485030		P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	109	769	2	ENST00000298229.2:c.1040G>A	p.Arg347Gln	p.R347Q	ENST00000298229	NM_001567.3	347	cGg/cAg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49425823	49425824	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	50	656	0	ENST00000301067.7:c.12662_12664dup	p.Gln4221dup	p.Q4221dup	ENST00000301067	NM_003482.3	4221	cta/cAGCta																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821572	72821572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	11	232	0	ENST00000268489.5:c.10603G>A	p.Glu3535Lys	p.E3535K	ENST00000268489	NM_006885.3	3535	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928074	178928074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	32	559	0	ENST00000263967.3:c.1352G>T	p.Gly451Val	p.G451V	ENST00000263967	NM_006218.2	451	gGa/gTa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16042482	16042482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	23	558	1	ENST00000268712.3:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000268712	NM_006311.3	398	Cgg/Tgg																																																																														
WHSC1L1	54904	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	61	964	3	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745624	162745624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	31	439	0	ENST00000367921.3:c.2039G>A	p.Arg680His	p.R680H	ENST00000367921	NM_006182.2	680	cGc/cAc																																																																														
CENPA	1058	MSKCC	GRCh37	2	27009121	27009126	+	inframe_deletion	In_Frame_Del	DEL	CCCGAC	CCCGAC	-			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	39	99	0	ENST00000335756.4:c.66_71del	p.Thr23_Pro24del	p.T23_P24del	ENST00000335756	NM_001809.3	19	agCCCGACc/agc																																																																														
STK11	6794	MSKCC	GRCh37	19	1219406	1219406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	92	630	0	ENST00000326873.7:c.458C>T	p.Ala153Val	p.A153V	ENST00000326873	NM_000455.4	153	gCc/gTc																																																																														
SYK	6850	MSKCC	GRCh37	9	93606184	93606184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201301123		P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	25	500	0	ENST00000375746.1:c.4G>A	p.Ala2Thr	p.A2T	ENST00000375746	NM_001174167.1	2	Gcc/Acc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16004808	16004808	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76080188		P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	52	698	0	ENST00000268712.3:c.2446G>A	p.Ala816Thr	p.A816T	ENST00000268712	NM_006311.3	816	Gct/Act																																																																														
SMYD3	64754	MSKCC	GRCh37	1	246518362	246518362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142323814		P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	23	511	0	ENST00000388985.4:c.199G>A	p.Val67Ile	p.V67I	ENST00000388985		67	Gtc/Atc																																																																														
MTOR	2475	MSKCC	GRCh37	1	11319325	11319325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	87	679	0	ENST00000361445.4:c.142G>A	p.Val48Ile	p.V48I	ENST00000361445	NM_004958.3	48	Gtc/Atc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023542	27023542	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	69	447	0	ENST00000324856.7:c.651del	p.Asn218ThrfsTer14	p.N218Tfs*14	ENST00000324856	NM_006015.4	216	taC/ta																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692880	89692880	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	28	377	0	ENST00000371953.3:c.364A>T	p.Ile122Phe	p.I122F	ENST00000371953	NM_000314.4	122	Att/Ttt																																																																														
FGF3	2248	MSKCC	GRCh37	11	69625374	69625374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	108	764	0	ENST00000334134.2:c.419C>T	p.Thr140Met	p.T140M	ENST00000334134	NM_005247.2	140	aCg/aTg																																																																														
MRE11A	4361	MSKCC	GRCh37	11	94209471	94209471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	17	374	0	ENST00000323929.3:c.643G>A	p.Val215Met	p.V215M	ENST00000323929	NM_005591.3	215	Gtg/Atg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352447	118352447	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	22	265	0	ENST00000534358.1:c.3656del	p.Lys1219SerfsTer16	p.K1219Sfs*16	ENST00000534358	NM_005933.3	1218	Aaa/aa																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435870	110435870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	64	554	0	ENST00000375856.3:c.2531C>T	p.Thr844Met	p.T844M	ENST00000375856	NM_003749.2	844	aCg/aTg																																																																														
MGA	23269	MSKCC	GRCh37	15	41988304	41988304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	64	697	0	ENST00000219905.7:c.1096C>T	p.Arg366Cys	p.R366C	ENST00000219905	NM_001164273.1	366	Cgt/Tgt																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14031682	14031682	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs180919656		P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	28	390	1	ENST00000311895.7:c.1871G>A	p.Arg624Gln	p.R624Q	ENST00000311895	NM_005236.2	624	cGg/cAg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646552	23646553	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	19	589	0	ENST00000261584.4:c.1314dup	p.Gly439ArgfsTer3	p.G439Rfs*3	ENST00000261584	NM_024675.3	438	-/A																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645163	67645163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	35	628	0	ENST00000264010.4:c.428C>A	p.Ser143Tyr	p.S143Y	ENST00000264010	NM_006565.3	143	tCt/tAt																																																																														
CDH1	999	MSKCC	GRCh37	16	68867268	68867268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	46	538	0	ENST00000261769.5:c.2515G>A	p.Gly839Ser	p.G839S	ENST00000261769	NM_004360.3	839	Ggt/Agt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830234	72830234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	22	412	0	ENST00000268489.5:c.6347del	p.Pro2116ArgfsTer60	p.P2116Rfs*60	ENST00000268489	NM_006885.3	2116	cCg/cg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993882	72993882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	38	480	0	ENST00000268489.5:c.163G>A	p.Ala55Thr	p.A55T	ENST00000268489	NM_006885.3	55	Gcc/Acc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619112	37619112	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	33	509	0	ENST00000447079.4:c.788A>G	p.Lys263Arg	p.K263R	ENST00000447079	NM_015083.1	263	aAg/aGg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41246517	41246517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	18	889	1	ENST00000357654.3:c.1031C>T	p.Ala344Val	p.A344V	ENST00000357654	NM_007294.3	344	gCt/gTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56434952	56434952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	73	720	0	ENST00000407977.2:c.2185C>A	p.Leu729Met	p.L729M	ENST00000407977		729	Ctg/Atg																																																																														
RPTOR	57521	MSKCC	GRCh37	17	78897301	78897301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	53	666	0	ENST00000306801.3:c.2636C>T	p.Pro879Leu	p.P879L	ENST00000306801	NM_020761.2	879	cCg/cTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15303107	15303107	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	115	958	0	ENST00000263388.2:c.343C>T	p.Pro115Ser	p.P115S	ENST00000263388	NM_000435.2	115	Cct/Tct																																																																														
MSH2	4436	MSKCC	GRCh37	2	47672741	47672741	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	25	704	0	ENST00000233146.2:c.1331del	p.Arg444LeufsTer10	p.R444Lfs*10	ENST00000233146	NM_000251.2	444	cGt/ct																																																																														
MSH6	2956	MSKCC	GRCh37	2	48028199	48028199	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	15	394	0	ENST00000234420.5:c.3077A>C	p.Asp1026Ala	p.D1026A	ENST00000234420	NM_000179.2	1026	gAt/gCt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225362540	225362540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	37	546	0	ENST00000264414.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000264414	NM_003590.4	546	cGa/cAa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71015126	71015126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	62	405	0	ENST00000318789.4:c.1804A>G	p.Ile602Val	p.I602V	ENST00000318789	NM_032682.5	602	Ata/Gta																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55156685	55156685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	26	456	0	ENST00000257290.5:c.3086C>A	p.Pro1029His	p.P1029H	ENST00000257290	NM_006206.4	1029	cCt/cAt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187538214	187538214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	34	762	2	ENST00000441802.2:c.9020C>T	p.Ala3007Val	p.A3007V	ENST00000441802	NM_005245.3	3007	gCg/gTg																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149515369	149515369	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	51	632	0	ENST00000261799.4:c.113del	p.Pro38ArgfsTer15	p.P38Rfs*15	ENST00000261799	NM_002609.3	38	cCg/cg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128420027	128420027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	45	877	0	ENST00000265960.3:c.401C>T	p.Pro134Leu	p.P134L	ENST00000265960	NM_001006617.1	134	cCa/cTa																																																																														
MUTYH	4595	MSKCC	GRCh37	1	45797414	45797414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	475	866	0	ENST00000372115.3:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000372115	NM_001048171.1	355	Gag/Aag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	415	684	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CSDE1	7812	MSKCC	GRCh37	1	115276369	115276369	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	140	617	0	ENST00000438362.2:c.959T>A	p.Val320Glu	p.V320E	ENST00000438362	NM_001242891.1	320	gTa/gAa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939849	71939850	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2389	770	856	1	ENST00000298229.2:c.476_477delinsTT	p.Pro159Leu	p.P159L	ENST00000298229	NM_001567.3	159	cCC/cTT																																																																														
SESN3	143686	MSKCC	GRCh37	11	94926647	94926647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	241	565	0	ENST00000536441.1:c.118C>T	p.Pro40Ser	p.P40S	ENST00000536441	NM_144665.3	40	Cca/Tca																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233099	69233099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	200	376	0	ENST00000462284.1:c.964C>T	p.Pro322Ser	p.P322S	ENST00000462284	NM_002392.5	322	Cca/Tca																																																																														
RAB35	11021	MSKCC	GRCh37	12	120536737	120536737	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	204	679	0	ENST00000229340.5:c.355G>A	p.Gly119Ser	p.G119S	ENST00000229340	NM_006861.6	119	Ggt/Agt																																																																														
MSI1	4440	MSKCC	GRCh37	12	120784118	120784118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	284	991	0	ENST00000257552.2:c.867C>G	p.His289Gln	p.H289Q	ENST00000257552	NM_002442.3	289	caC/caG																																																																														
FLT3	2322	MSKCC	GRCh37	13	28631597	28631598	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	152	362	0	ENST00000241453.7:c.370_371delinsAA	p.Gly124Lys	p.G124K	ENST00000241453	NM_004119.2	124	GGa/AAa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347911	73347911	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146500302		P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	163	316	0	ENST00000377767.4:c.1150C>T	p.Arg384Cys	p.R384C	ENST00000377767	NM_014953.3	384	Cgc/Tgc																																																																														
TSHR	7253	MSKCC	GRCh37	14	81422175	81422175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	309	479	0	ENST00000298171.2:c.151C>T	p.Pro51Ser	p.P51S	ENST00000298171	NM_000369.2	51	Ccg/Tcg																																																																														
B2M	567	MSKCC	GRCh37	15	45007814	45007814	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	151	449	0	ENST00000558401.1:c.261C>G	p.Tyr87Ter	p.Y87*	ENST00000558401	NM_004048.2	87	taC/taG																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88726689	88726689	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	125	503	1	ENST00000360948.2:c.355C>T	p.Gln119Ter	p.Q119*	ENST00000360948	NM_001012338.2	119	Cag/Tag																																																																														
BLM	641	MSKCC	GRCh37	15	91352491	91352491	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	101	320	0	ENST00000355112.3:c.3874+2T>C		p.X1292_splice	ENST00000355112	NM_000057.2	1292																																																																															
SLX4	84464	MSKCC	GRCh37	16	3633287	3633287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149726415		P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	324	1139	0	ENST00000294008.3:c.4964G>A	p.Arg1655Lys	p.R1655K	ENST00000294008	NM_032444.2	1655	aGg/aAg																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12044471	12044471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	218	336	0	ENST00000353533.5:c.1094C>T	p.Pro365Leu	p.P365L	ENST00000353533	NM_003010.3	365	cCc/cTc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5220096	5220096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	363	621	0	ENST00000357368.4:c.3619C>T	p.Pro1207Ser	p.P1207S	ENST00000357368	NM_002850.3	1207	Ccc/Tcc																																																																														
BRD4	23476	MSKCC	GRCh37	19	15376365	15376365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1217	674	1211	0	ENST00000263377.2:c.649C>T	p.Pro217Ser	p.P217S	ENST00000263377	NM_058243.2	217	Cct/Tct																																																																														
XPO1	7514	MSKCC	GRCh37	2	61712946	61712946	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	147	585	0	ENST00000401558.2:c.2465T>A	p.Ile822Lys	p.I822K	ENST00000401558	NM_003400.3	822	aTa/aAa																																																																														
PMS1	5378	MSKCC	GRCh37	2	190719454	190719454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	68	224	0	ENST00000441310.2:c.1456G>A	p.Gly486Ser	p.G486S	ENST00000441310	NM_000534.4	486	Ggt/Agt																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212426786	212426786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	134	466	0	ENST00000342788.4:c.2329C>T	p.His777Tyr	p.H777Y	ENST00000342788	NM_005235.2	777	Cat/Tat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212570052	212570052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	243	537	0	ENST00000342788.4:c.1189G>A	p.Glu397Lys	p.E397K	ENST00000342788	NM_005235.2	397	Gag/Aag																																																																														
PAK7	57144	MSKCC	GRCh37	20	9547004	9547004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	81	300	0	ENST00000353224.5:c.1018C>T	p.Leu340Phe	p.L340F	ENST00000353224	NM_177990.2	340	Ctc/Ttc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	320	304	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163857	47163857	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	558	577	0	ENST00000409792.3:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000409792	NM_014159.6	757	Caa/Taa																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185181392	185181392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	99	370	0	ENST00000265026.3:c.1333A>G	p.Thr445Ala	p.T445A	ENST00000265026	NM_004721.4	445	Act/Gct																																																																														
BCL6	604	MSKCC	GRCh37	3	187444561	187444561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	224	672	0	ENST00000232014.4:c.1666C>T	p.Arg556Cys	p.R556C	ENST00000232014	NM_001130845.1	556	Cgc/Tgc																																																																														
TET2	54790	MSKCC	GRCh37	4	106197443	106197443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	91	291	0	ENST00000380013.4:c.5776C>T	p.Arg1926Cys	p.R1926C	ENST00000380013	NM_001127208.2	1926	Cgt/Tgt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143081584	143081584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	172	595	0	ENST00000262992.4:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000262992	NM_001101669.1	497	cCc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	357	383	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453150	140453150	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	99	325	0	ENST00000288602.6:c.1785T>G	p.Phe595Leu	p.F595L	ENST00000288602	NM_004333.4	595	ttT/ttG																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8376627	8376627	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	461	479	0	ENST00000356435.5:c.4486C>T	p.Arg1496Ter	p.R1496*	ENST00000356435		1496	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	325	692	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0032592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	36	213	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0032592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	36	213	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55371782	55371782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	112	286	0	ENST00000297316.4:c.472G>A	p.Gly158Ser	p.G158S	ENST00000297316	NM_022454.3	158	Ggc/Agc																																																																														
CDK4	1019	MSKCC	GRCh37	12	58145051	58145052	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	148	580	0	ENST00000257904.6:c.292dup	p.Gln98ProfsTer61	p.Q98Pfs*61	ENST00000257904	NM_000075.3	98	cag/cCag																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40679355	40679370	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTAGGCAAATGAAAG	CCTAGGCAAATGAAAG	-			P-0032592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	79	420	1	ENST00000249776.8:c.438-4_449del		p.X146_splice	ENST00000249776	NM_033286.3	146																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0032599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	193	507	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294283	1294283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	47	448	1	ENST00000310581.5:c.718C>T	p.Arg240Cys	p.R240C	ENST00000310581	NM_198253.2	240	Cgt/Tgt																																																																														
YES1	7525	MSKCC	GRCh37	18	724597	724597	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	54	494	1	ENST00000314574.4:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000314574	NM_005433.3	487	Cga/Tga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5219955	5219955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	86	497	0	ENST00000357368.4:c.3760G>A	p.Glu1254Lys	p.E1254K	ENST00000357368	NM_002850.3	1254	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952117	178952117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	41	348	0	ENST00000263967.3:c.3172A>C	p.Ile1058Leu	p.I1058L	ENST00000263967	NM_006218.2	1058	Atc/Ctc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	63	386	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0032606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	28	956	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	8	315	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106483	27106484	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0032606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	80	652	0	ENST00000324856.7:c.6098dup	p.Glu2034GlyfsTer65	p.E2034Gfs*65	ENST00000324856	NM_006015.4	2032	gaa/gAaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249390	153249390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	90	708	0	ENST00000281708.4:c.1388C>T	p.Thr463Ile	p.T463I	ENST00000281708	NM_033632.3	463	aCt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	127	584	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	84	336	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	221	946	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																														
H3F3A	3020	MSKCC	GRCh37	1	226253401	226253401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	39	206	0	ENST00000366813.1:c.173C>T	p.Ser58Phe	p.S58F	ENST00000366813		58	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49432581	49432581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	189	852	0	ENST00000301067.7:c.8558C>T	p.Pro2853Leu	p.P2853L	ENST00000301067	NM_003482.3	2853	cCg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112173766	112173766	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	69	449	0	ENST00000257430.4:c.2477del	p.Leu826Ter	p.L826*	ENST00000257430	NM_000038.5	825	taT/ta																																																																														
EGFR	1956	MSKCC	GRCh37	7	55223523	55223523	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	188	863	0	ENST00000275493.2:c.890G>A	p.Arg297His	p.R297H	ENST00000275493	NM_005228.3	297	cGt/cAt																																																																														
ARAF	369	MSKCC	GRCh37	X	47426043	47426043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	166	773	0	ENST00000377045.4:c.563G>A	p.Arg188His	p.R188H	ENST00000377045	NM_001654.4	188	cGc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0032630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	71	455	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247190	153247190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	57	324	0	ENST00000281708.4:c.1612C>A	p.Gln538Lys	p.Q538K	ENST00000281708	NM_033632.3	538	Cag/Aag																																																																														
RBM10	8241	MSKCC	GRCh37	X	47028828	47028855	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTCGCGAGTATGGCAGCCAGGAGGGC	TCCTCGCGAGTATGGCAGCCAGGAGGGC	-			P-0032630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	134	693	0	ENST00000329236.7:c.132_159del	p.Tyr44Ter	p.Y44*	ENST00000329236	NM_001204466.1	44	taTCCTCGCGAGTATGGCAGCCAGGAGGGC/ta																																																																														
AR	367	MSKCC	GRCh37	X	66765779	66765779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	70	1023	0	ENST00000374690.3:c.791G>T	p.Arg264Leu	p.R264L	ENST00000374690	NM_000044.3	264	cGg/cTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0032635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	194	350	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	194	597	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
ARID2	196528	MSKCC	GRCh37	12	46243505	46243526	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGTTGTTCGTGTTGATTCTG	TCTGTTGTTCGTGTTGATTCTG	-			P-0032635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	94	370	0	ENST00000334344.6:c.1859_1880del	p.Ser620PhefsTer20	p.S620Ffs*20	ENST00000334344	NM_152641.2	620	TCTGTTGTTCGTGTTGATTCTGtt/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	325	712	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15271870	15271870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	392	855	2	ENST00000263388.2:c.6569C>T	p.Ala2190Val	p.A2190V	ENST00000263388	NM_000435.2	2190	gCg/gTg																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212589815	212589815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	68	455	0	ENST00000342788.4:c.727G>A	p.Asp243Asn	p.D243N	ENST00000342788	NM_005235.2	243	Gac/Aac																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185190803	185190803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	113	692	0	ENST00000265026.3:c.1684G>A	p.Val562Met	p.V562M	ENST00000265026	NM_004721.4	562	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971169	21971170	+	missense_variant	Missense_Mutation	DNP	CA	CA	TG			P-0032678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	125	361	0	ENST00000304494.5:c.188_189inv	p.Leu63Pro	p.L63P	ENST00000304494	NM_000077.4	63	cTG/cCA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971169	21971170	+	missense_variant	Missense_Mutation	DNP	CA	CA	TG			P-0032678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	125	361	0	ENST00000304494.5:c.188_189inv	p.Leu63Pro	p.L63P	ENST00000304494	NM_000077.4	63	cTG/cCA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971169	21971170	+	missense_variant	Missense_Mutation	DNP	CA	CA	TG			P-0032678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	125	361	0	ENST00000304494.5:c.188_189inv	p.Leu63Pro	p.L63P	ENST00000304494	NM_000077.4	63	cTG/cCA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	81	550	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0032680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	1119	569	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	41	243	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	41	243	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	41	243	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604735	48604736	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0032680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	59	310	0	ENST00000342988.3:c.1558dup	p.Glu520GlyfsTer7	p.E520Gfs*7	ENST00000342988	NM_005359.5	519	-/G																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917634	178917634	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	41	299	0	ENST00000263967.3:c.509A>G	p.Asn170Ser	p.N170S	ENST00000263967	NM_006218.2	170	aAt/aGt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268224	153268224	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0032680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	21	130	0	ENST00000281708.4:c.585-1G>A		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																															
DIS3	22894	MSKCC	GRCh37	13	73345240	73345240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	135	273	0	ENST00000377767.4:c.1649C>T	p.Ser550Phe	p.S550F	ENST00000377767	NM_014953.3	550	tCc/tTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0032682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	97	297	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
GPS2	2874	MSKCC	GRCh37	17	7217652	7217654	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0032682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	21	416	1	ENST00000380728.2:c.273_275del	p.Lys92del	p.K92del	ENST00000380728		91	aaGAAa/aaa																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871599	35871599	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	53	259	0	ENST00000216797.5:c.906+1G>T		p.X302_splice	ENST00000216797	NM_020529.2	302																																																																															
TP53	7157	MSKCC	GRCh37	17	7572926	7572935	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GTCAGTCTGA	GTCAGTCTGA	-			P-0032682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	53	433	0	ENST00000269305.4:c.1174_*1del		p.*392*	ENST00000269305	NM_001126112.2	392																																																																															
SRSF2	6427	MSKCC	GRCh37	17	74732265	74732265	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	94	227	0	ENST00000359995.5:c.644A>T	p.Glu215Val	p.E215V	ENST00000359995	NM_001195427.1	215	gAg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	23	659	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0032685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	229	595	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
PDCD1LG2	80380	MSKCC	GRCh37	9	5534921	5534921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	139	362	0	ENST00000397747.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000397747	NM_025239.3	78	Gag/Aag																																																																														
RB1	5925	MSKCC	GRCh37	13	48934189	48934189	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	139	395	0	ENST00000267163.4:c.644C>A	p.Ser215Ter	p.S215*	ENST00000267163	NM_000321.2	215	tCa/tAa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11217239	11217239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	192	521	0	ENST00000361445.4:c.4439G>T	p.Arg1480Leu	p.R1480L	ENST00000361445	NM_004958.3	1480	cGc/cTc																																																																														
RET	5979	MSKCC	GRCh37	10	43622151	43622151	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	179	428	0	ENST00000355710.3:c.3168G>C	p.Trp1056Cys	p.W1056C	ENST00000355710	NM_020975.4	1056	tgG/tgC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49426415	49426415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	277	759	0	ENST00000301067.7:c.12073G>A	p.Glu4025Lys	p.E4025K	ENST00000301067	NM_003482.3	4025	Gaa/Aaa																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67457593	67457593	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	79	453	0	ENST00000327367.4:c.403C>A	p.Leu135Ile	p.L135I	ENST00000327367	NM_005902.3	135	Cta/Ata																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99251234	99251234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	26	421	0	ENST00000268035.6:c.538G>T	p.Asp180Tyr	p.D180Y	ENST00000268035	NM_000875.3	180	Gac/Tac																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251791	212251791	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	89	250	0	ENST00000342788.4:c.3268G>T	p.Glu1090Ter	p.E1090*	ENST00000342788	NM_005235.2	1090	Gaa/Taa																																																																														
CUL3	8452	MSKCC	GRCh37	2	225367791	225367791	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0032685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	65	256	0	ENST00000264414.4:c.1378-2A>C		p.X460_splice	ENST00000264414	NM_003590.4	460																																																																															
IRS1	3667	MSKCC	GRCh37	2	227663433	227663433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	66	235	0	ENST00000305123.5:c.22G>C	p.Asp8His	p.D8H	ENST00000305123	NM_005544.2	8	Gat/Cat																																																																														
PPP6C	5537	MSKCC	GRCh37	9	127933446	127933446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	86	361	0	ENST00000373547.4:c.89A>G	p.Tyr30Cys	p.Y30C	ENST00000373547	NM_002721.4	30	tAc/tGc																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56770071	56770071	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	34	479	0	ENST00000337432.4:c.67G>T	p.Val23Leu	p.V23L	ENST00000337432	NM_058216.2	23	Gtg/Ttg																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56770083	56770083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	33	480	0	ENST00000337432.4:c.79C>G	p.Leu27Val	p.L27V	ENST00000337432	NM_058216.2	27	Ctg/Gtg																																																																														
DAXX	1616	MSKCC	GRCh37	6	33287280	33287280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	52	501	1	ENST00000374542.5:c.1817G>A	p.Gly606Asp	p.G606D	ENST00000374542	NM_001141970.1	606	gGc/gAc																																																																														
ATRX	546	MSKCC	GRCh37	X	76845334	76845334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	34	388	0	ENST00000373344.5:c.6187G>C	p.Glu2063Gln	p.E2063Q	ENST00000373344	NM_000489.3	2063	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	87	569	1	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
RBM10	8241	MSKCC	GRCh37	X	47044901	47044901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	108	863	0	ENST00000329236.7:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000329236	NM_001204466.1	665	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27056140	27056140	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	29	349	0	ENST00000324856.7:c.1138-2A>T		p.X380_splice	ENST00000324856	NM_006015.4	380																																																																															
NUF2	83540	MSKCC	GRCh37	1	163309260	163309260	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	34	318	0	ENST00000271452.3:c.599A>C	p.Gln200Pro	p.Q200P	ENST00000271452	NM_145697.2	200	cAa/cCa																																																																														
IGF2	3481	MSKCC	GRCh37	11	2156639	2156640	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	67	565	2	ENST00000434045.2:c.282_283delinsCT	p.Asp95Tyr	p.D95Y	ENST00000434045	NM_001127598.1	94	gtGGac/gtCTac																																																																														
FLT3	2322	MSKCC	GRCh37	13	28623550	28623550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	69	450	2	ENST00000241453.7:c.1007C>A	p.Pro336His	p.P336H	ENST00000241453	NM_004119.2	336	cCc/cAc																																																																														
DICER1	23405	MSKCC	GRCh37	14	95571442	95571442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	30	243	0	ENST00000343455.3:c.3235G>A	p.Gly1079Ser	p.G1079S	ENST00000343455	NM_177438.2	1079	Ggc/Agc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119706	17119706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	44	436	0	ENST00000285071.4:c.1288G>T	p.Val430Leu	p.V430L	ENST00000285071	NM_144997.5	430	Gtg/Ttg																																																																														
TP63	8626	MSKCC	GRCh37	3	189586483	189586483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	52	359	0	ENST00000264731.3:c.1107G>T	p.Lys369Asn	p.K369N	ENST00000264731	NM_003722.4	369	aaG/aaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542629	187542629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	34	503	1	ENST00000441802.2:c.5111G>T	p.Gly1704Val	p.G1704V	ENST00000441802	NM_005245.3	1704	gGa/gTa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589161	67589161	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	18	284	0	ENST00000274335.5:c.1149A>G	p.Ile383Met	p.I383M	ENST00000274335		383	atA/atG																																																																														
STK11	6794	MSKCC	GRCh37	19	1207038	1207039	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0032689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	80	618	0	ENST00000326873.7:c.126_127delinsT	p.Ala43ProfsTer8	p.A43Pfs*8	ENST00000326873	NM_000455.4	42	cgGGcc/cgTcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0032696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	141	528	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	243	622	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																														
BLM	641	MSKCC	GRCh37	15	91298115	91298115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	116	330	0	ENST00000355112.3:c.1034C>A	p.Pro345His	p.P345H	ENST00000355112	NM_000057.2	345	cCt/cAt																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40757401	40757401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1240	181	616	0	ENST00000373198.4:c.2897A>G	p.Tyr966Cys	p.Y966C	ENST00000373198	NM_133170.3	966	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112175749	112175750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0032696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	93	334	0	ENST00000257430.4:c.4459_4460dup	p.Leu1489TyrfsTer19	p.L1489Yfs*19	ENST00000257430	NM_000038.5	1486	-/AC																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	175	366	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	214	443	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	256	535	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968867	15968867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	103	443	0	ENST00000268712.3:c.4883G>A	p.Arg1628His	p.R1628H	ENST00000268712	NM_006311.3	1628	cGt/cAt																																																																														
MYCN	4613	MSKCC	GRCh37	2	16086205	16086205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	31	352	0	ENST00000281043.3:c.1381G>T	p.Ala461Ser	p.A461S	ENST00000281043	NM_005378.4	461	Gct/Tct																																																																														
POLE	5426	MSKCC	GRCh37	12	133201565	133201565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	136	490	0	ENST00000320574.5:c.6673C>T	p.Arg2225Cys	p.R2225C	ENST00000320574	NM_006231.2	2225	Cgc/Tgc																																																																														
NF1	4763	MSKCC	GRCh37	17	29667552	29667552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	111	484	0	ENST00000358273.4:c.6951G>T	p.Trp2317Cys	p.W2317C	ENST00000358273	NM_001042492.2	2317	tgG/tgT																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198273279	198273279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	43	390	0	ENST00000335508.6:c.931G>C	p.Ala311Pro	p.A311P	ENST00000335508	NM_012433.2	311	Gct/Cct																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212587152	212587152	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	61	450	0	ENST00000342788.4:c.849C>A	p.Tyr283Ter	p.Y283*	ENST00000342788	NM_005235.2	283	taC/taA																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204655	128204655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	66	480	0	ENST00000341105.2:c.786C>A	p.Ser262Arg	p.S262R	ENST00000341105	NM_032638.4	262	agC/agA																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495468	149495468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	143	639	0	ENST00000261799.4:c.3179G>A	p.Cys1060Tyr	p.C1060Y	ENST00000261799	NM_002609.3	1060	tGt/tAt																																																																														
VEGFA	7422	MSKCC	GRCh37	6	43745355	43745355	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	138	506	0	ENST00000523873.1:c.268G>T	p.Glu90Ter	p.E90*	ENST00000523873		90	Gag/Tag																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139393703	139393703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	32	459	0	ENST00000277541.6:c.5943C>G	p.Ile1981Met	p.I1981M	ENST00000277541	NM_017617.3	1981	atC/atG																																																																														
MED12	9968	MSKCC	GRCh37	X	70348454	70348454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	35	479	0	ENST00000374080.3:c.3361G>T	p.Asp1121Tyr	p.D1121Y	ENST00000374080		1121	Gac/Tac																																																																														
MTOR	2475	MSKCC	GRCh37	1	11303273	11303276	+	missense_variant	Missense_Mutation	ONP	AGGG	AGGG	CGGC			P-0032755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	64	497	0	ENST00000361445.4:c.1307_1310delinsGCCG	p.Ala436_Leu437delinsGlyArg	p.A436_L437delinsGR	ENST00000361445	NM_004958.3	436	gCCCTg/gGCCGg																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061854	38061862	+	inframe_deletion	In_Frame_Del	DEL	GTTCATGGA	GTTCATGGA	-			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	109	575	0	ENST00000250448.2:c.127_135delTCCATGAAC	p.Ser43_Asn45del	p.S43_N45del	ENST00000250448	NM_004496.3	43	TCCATGAAC/-																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061232	38061234	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	109	392	0	ENST00000250448.2:c.755_757del	p.Asn252del	p.N252del	ENST00000250448	NM_004496.3	252	aACAtg/atg																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2222501	2222501	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	113	547	0	ENST00000326181.6:c.695G>C	p.Arg232Pro	p.R232P	ENST00000326181	NM_032271.2	232	cGg/cCg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19261498	19261498	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	117	483	0	ENST00000162023.5:c.47A>T	p.Asn16Ile	p.N16I	ENST00000162023		16	aAt/aTt																																																																														
AXL	558	MSKCC	GRCh37	19	41745212	41745212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	85	416	0	ENST00000301178.4:c.1278G>T	p.Trp426Cys	p.W426C	ENST00000301178	NM_021913.4	426	tgG/tgT																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375181	31375181	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	99	480	0	ENST00000328111.2:c.578A>T	p.Gln193Leu	p.Q193L	ENST00000328111	NM_006892.3	193	cAg/cTg																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155571	56155571	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0032757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	67	284	0	ENST00000399503.3:c.663T>G	p.Asp221Glu	p.D221E	ENST00000399503	NM_005921.1	221	gaT/gaG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0032778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	279	468	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692912	89692970	+	frameshift_variant	Frame_Shift_Del	DEL	TGTAATGATATGTGCATATTTATTACATCGGGGCAAATTTTTAAAGGCACAAGAGGCCC	TGTAATGATATGTGCATATTTATTACATCGGGGCAAATTTTTAAAGGCACAAGAGGCCC	-			P-0032778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	19	357	0	ENST00000371953.3:c.397_455del	p.Val133ArgfsTer27	p.V133Rfs*27	ENST00000371953	NM_000314.4	132	ggTGTAATGATATGTGCATATTTATTACATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCta/ggta																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	222	609	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	66	277	0	ENST00000288602.6:c.1790T>A	p.Leu597Gln	p.L597Q	ENST00000288602	NM_004333.4	597	cTa/cAa																																																																														
NF2	4771	MSKCC	GRCh37	22	30077580	30077580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	63	277	0	ENST00000338641.4:c.1727C>T	p.Thr576Ile	p.T576I	ENST00000338641	NM_000268.3	576	aCc/aTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1279569	1279569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	54	558	2	ENST00000310581.5:c.1967C>T	p.Ser656Leu	p.S656L	ENST00000310581	NM_198253.2	656	tCg/tTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0032780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	38	278	0				ENST00000310581	NM_198253.2																																																																																
SOS1	6654	MSKCC	GRCh37	2	39214711	39214711	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	132	323	0	ENST00000402219.2:c.3413T>C	p.Ile1138Thr	p.I1138T	ENST00000402219	NM_005633.3	1138	aTa/aCa																																																																														
PRDM14	63978	MSKCC	GRCh37	8	70981534	70981534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	93	661	0	ENST00000276594.2:c.562G>A	p.Glu188Lys	p.E188K	ENST00000276594	NM_024504.3	188	Gaa/Aaa																																																																														
PGR	5241	MSKCC	GRCh37	11	100933278	100933279	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0032783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	36	536	0	ENST00000325455.5:c.2111dup	p.Asp704GlufsTer6	p.D704Efs*6	ENST00000325455	NM_001202474.3	704	gac/gaAc																																																																														
APC	324	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	93	276	0	ENST00000257430.4:c.2805C>G	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taG																																																																														
KLF4	9314	MSKCC	GRCh37	9	110248153	110248153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	58	384	0	ENST00000374672.4:c.1319C>T	p.Ser440Leu	p.S440L	ENST00000374672	NM_004235.4	440	tCa/tTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70446282	70446282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	128	376	0	ENST00000373644.4:c.5222G>T	p.Arg1741Leu	p.R1741L	ENST00000373644	NM_030625.2	1741	cGc/cTc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38967262	38967262	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	31	172	0	ENST00000357387.3:c.1218+1G>T		p.X406_splice	ENST00000357387	NM_152756.3	406																																																																															
RPTOR	57521	MSKCC	GRCh37	17	78811796	78811796	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	54	364	0	ENST00000306801.3:c.1212+1del		p.R404fs	ENST00000306801	NM_020761.2	404	cGg/cg																																																																														
STK11	6794	MSKCC	GRCh37	19	1220380	1220380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	124	443	1	ENST00000326873.7:c.473del	p.Cys158PhefsTer3	p.C158Ffs*3	ENST00000326873	NM_000455.4	158	tGt/tt																																																																														
SOS1	6654	MSKCC	GRCh37	2	39222462	39222462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	60	575	0	ENST00000402219.2:c.3148A>G	p.Met1050Val	p.M1050V	ENST00000402219	NM_005633.3	1050	Atg/Gtg																																																																														
MED12	9968	MSKCC	GRCh37	X	70352982	70352982	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0032784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	53	409	0	ENST00000374080.3:c.4537A>G	p.Asn1513Asp	p.N1513D	ENST00000374080		1513	Aat/Gat																																																																														
CDH1	999	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008398-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			161	218	348	1	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259368	89259368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008398-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			603	335	590	0	ENST00000336596.2:c.512T>C	p.Val171Ala	p.V171A	ENST00000336596	NM_005233.5	171	gTa/gCa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151873518	151873518	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008398-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			733	348	610	0	ENST00000262189.6:c.9020del	p.Gly3007GlufsTer25	p.G3007Efs*25	ENST00000262189	NM_170606.2	3007	gGa/ga																																																																														
RAD51C	5889	MSKCC	GRCh37	17	56780677	56780677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008398-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			512	323	554	0	ENST00000337432.4:c.692C>T	p.Ser231Leu	p.S231L	ENST00000337432	NM_058216.2	231	tCa/tTa																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878356	151878356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008398-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			715	365	559	1	ENST00000262189.6:c.6589C>T	p.Gln2197Ter	p.Q2197*	ENST00000262189	NM_170606.2	2197	Cag/Tag																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151878785	151878785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008398-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			518	251	457	0	ENST00000262189.6:c.6160C>G	p.Gln2054Glu	p.Q2054E	ENST00000262189	NM_170606.2	2054	Cag/Gag																																																																														
FLT1	2321	MSKCC	GRCh37	13	28891702	28891702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008398-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			277	344	640	0	ENST00000282397.4:c.3319G>A	p.Glu1107Lys	p.E1107K	ENST00000282397	NM_002019.4	1107	Gag/Aag																																																																														
ATRX	546	MSKCC	GRCh37	X	76949427	76949427	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0008398-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			347	144	453	0	ENST00000373344.5:c.371-1G>A		p.X124_splice	ENST00000373344	NM_000489.3	124																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018565-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	138	379	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018565-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			750	99	581	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206650101	206650129	+	protein_altering_variant	In_Frame_Del	DEL	TGGAGTGACCTTGTACCATGCAGCCACTG	TGGAGTGACCTTGTACCATGCAGCCACTG	GTCGGGAT			P-0018565-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			830	57	577	2	ENST00000367120.3:c.621_649delinsGTCGGGAT	p.Ile207_Gly217delinsMetSerGlyCys	p.I207_G217delinsMSGC	ENST00000367120	NM_014002.3	207	atTGGAGTGACCTTGTACCATGCAGCCACTGgc/atGTCGGGATgc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56477555	56477555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018565-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	69	342	0	ENST00000267101.3:c.103G>T	p.Gly35Cys	p.G35C	ENST00000267101	NM_001982.3	35	Ggc/Tgc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99491858	99491858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018565-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			758	67	439	1	ENST00000268035.6:c.3643G>A	p.Gly1215Ser	p.G1215S	ENST00000268035	NM_000875.3	1215	Ggc/Agc																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32190318	32190318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018565-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	59	414	0	ENST00000375023.3:c.421C>A	p.Pro141Thr	p.P141T	ENST00000375023	NM_004557.3	141	Cca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	48	668	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	99	713	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	54	385	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	84	449	0	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																															
ATM	472	MSKCC	GRCh37	11	108121648	108121648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	92	485	0	ENST00000278616.4:c.1456A>G	p.Lys486Glu	p.K486E	ENST00000278616	NM_000051.3	486	Aaa/Gaa																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29099520	29099520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	52	293	5	ENST00000328354.6:c.881C>T	p.Ala294Val	p.A294V	ENST00000328354	NM_007194.3	294	gCa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	292	720	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552922	106552922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	85	689	0	ENST00000369096.4:c.887G>A	p.Arg296Gln	p.R296Q	ENST00000369096	NM_001198.3	296	cGg/cAg																																																																														
IL10	3586	MSKCC	GRCh37	1	206944759	206944759	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0031968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	59	413	0	ENST00000423557.1:c.167A>G	p.Gln56Arg	p.Q56R	ENST00000423557	NM_000572.2	56	cAa/cGa																																																																														
LATS2	26524	MSKCC	GRCh37	13	21549247	21549247	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	112	789	0	ENST00000382592.4:c.3029del	p.Pro1010LeufsTer62	p.P1010Lfs*62	ENST00000382592	NM_014572.2	1010	cCt/ct																																																																														
APC	324	MSKCC	GRCh37	5	112174236	112174236	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	183	311	0	ENST00000257430.4:c.2945C>A	p.Ser982Ter	p.S982*	ENST00000257430	NM_000038.5	982	tCg/tAg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123185190	123185190	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	69	548	0	ENST00000218089.9:c.1142A>G	p.Asp381Gly	p.D381G	ENST00000218089	NM_001042749.1	381	gAc/gGc																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99452077	99452077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	22	318	0	ENST00000268035.6:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000268035	NM_000875.3	471	Cgc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108122613	108122613	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	97	475	0	ENST00000278616.4:c.1658del	p.Gly553GlufsTer3	p.G553Efs*3	ENST00000278616	NM_000051.3	553	Gga/ga																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2226475	2226475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	138	914	0	ENST00000398665.3:c.3955G>A	p.Gly1319Ser	p.G1319S	ENST00000398665	NM_032482.2	1319	Ggc/Agc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219012	36219012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	119	689	0	ENST00000222270.7:c.4511C>T	p.Ala1504Val	p.A1504V	ENST00000222270	NM_014727.1	1504	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	135	537	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0031988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	220	651	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867343	45867343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	151	546	1	ENST00000391945.4:c.850G>A	p.Glu284Lys	p.E284K	ENST00000391945	NM_000400.3	284	Gag/Aag																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	100	750	0	ENST00000250448.2:c.676G>T	p.Asp226Tyr	p.D226Y	ENST00000250448	NM_004496.3	226	Gac/Tac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16260845	16260845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	62	573	0	ENST00000375759.3:c.8110G>T	p.Val2704Leu	p.V2704L	ENST00000375759	NM_015001.2	2704	Gtg/Ttg																																																																														
POLE	5426	MSKCC	GRCh37	12	133241910	133241912	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0031990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	88	582	0	ENST00000320574.5:c.2444_2446del	p.Phe815del	p.F815del	ENST00000320574	NM_006231.2	815	tTCTat/tat																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119969	70119969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	25	257	0	ENST00000245479.2:c.971C>T	p.Thr324Ile	p.T324I	ENST00000245479	NM_000346.3	324	aCc/aTc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37649122	37649122	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	194	338	0	ENST00000447079.4:c.2229del	p.Ala744ProfsTer9	p.A744Pfs*9	ENST00000447079	NM_015083.1	743	Aaa/aa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274849	38274849	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779707422		P-0031992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	246	597	2	ENST00000425967.3:c.1731C>A	p.Asn577Lys	p.N577K	ENST00000425967	NM_001174067.1	577	aaC/aaA																																																																														
ROS1	6098	MSKCC	GRCh37	6	117678970	117678970	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	132	337	0	ENST00000368508.3:c.3851del	p.Leu1284Ter	p.L1284*	ENST00000368508	NM_002944.2	1284	tTa/ta																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	224	518	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	114	349	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	152	534	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																														
CBFB	865	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0031994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	32	224	0	ENST00000412916.2:c.165+1G>C		p.X55_splice	ENST00000412916		55																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0031994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	155	659	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273991	10273991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	168	644	0	ENST00000330684.3:c.278C>G	p.Ala93Gly	p.A93G	ENST00000330684	NM_001134407.1	93	gCa/gGa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589151	67589153	+	inframe_deletion	In_Frame_Del	DEL	TAA	TAA	-			P-0031994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	149	248	0	ENST00000274335.5:c.1140_1142del	p.Leu380_Ile381delinsPhe	p.L380_I381delinsF	ENST00000274335		380	tTAAtc/ttc																																																																														
PRDM1	639	MSKCC	GRCh37	6	106536112	106536112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	121	321	0	ENST00000369096.4:c.79C>A	p.Gln27Lys	p.Q27K	ENST00000369096	NM_001198.3	27	Cag/Aag																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508899	106508899	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	104	361	0	ENST00000359195.3:c.893A>G	p.Lys298Arg	p.K298R	ENST00000359195	NM_002649.2	298	aAg/aGg																																																																														
RBM10	8241	MSKCC	GRCh37	X	47038550	47038550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	137	553	0	ENST00000329236.7:c.481G>A	p.Val161Met	p.V161M	ENST00000329236	NM_001204466.1	161	Gtg/Atg																																																																														
NFKBIA	4792	MSKCC	GRCh37	14	35871222	35871222	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	34	395	0	ENST00000216797.5:c.951A>T	p.Leu317Phe	p.L317F	ENST00000216797	NM_020529.2	317	ttA/ttT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55210026	55210026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	304	346	0	ENST00000275493.2:c.136G>A	p.Asp46Asn	p.D46N	ENST00000275493	NM_005228.3	46	Gat/Aat																																																																														
BCOR	54880	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	122	634	1	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535352	66535352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	99	712	3	ENST00000273854.3:c.109C>T	p.Arg37Trp	p.R37W	ENST00000273854	NM_004439.5	37	Cgg/Tgg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	37	470	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
DICER1	23405	MSKCC	GRCh37	14	95557630	95557630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	88	585	0	ENST00000343455.3:c.5437G>A	p.Glu1813Lys	p.E1813K	ENST00000343455	NM_177438.2	1813	Gag/Aag																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589581	67589583	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	28	234	0	ENST00000274335.5:c.1345_1347del	p.Leu449del	p.L449del	ENST00000274335		448	aaATTa/aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	50	434	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	41	392	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	45	557	0	ENST00000256078.4:c.38_39delinsTT	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGC/gTT																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380338	14380339	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCCCACGCC			P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	71	265	0	ENST00000256196.4:c.70_78dup	p.Gly24_Gly26dup	p.G24_G26dup	ENST00000256196		24	-/GGCGTGGGC																																																																														
DICER1	23405	MSKCC	GRCh37	14	95574406	95574406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	26	251	0	ENST00000343455.3:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000343455	NM_177438.2	821	Cgc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41385120	41385120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	141	716	0	ENST00000373198.4:c.841G>A	p.Ala281Thr	p.A281T	ENST00000373198	NM_133170.3	281	Gcg/Acg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023985	27024000	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGGAGCAGCGGCGG	CCGGGAGCAGCGGCGG	-			P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	22	61	0	ENST00000324856.7:c.1092_1107del	p.Ser366GlyfsTer20	p.S366Gfs*20	ENST00000324856	NM_006015.4	364	cCCGGGAGCAGCGGCGGc/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624271	89624271	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	80	439	0	ENST00000371953.3:c.45A>T	p.Arg15Ser	p.R15S	ENST00000371953	NM_000314.4	15	agA/agT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89624274	89624287	+	frameshift_variant	Frame_Shift_Del	DEL	TCAAGAGGATGGAT	TCAAGAGGATGGAT	-			P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	73	467	0	ENST00000371953.3:c.50_63del	p.Gln17ArgfsTer22	p.Q17Rfs*22	ENST00000371953	NM_000314.4	16	taTCAAGAGGATGGATtc/tatc																																																																														
PGR	5241	MSKCC	GRCh37	11	100999302	100999302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	157	953	0	ENST00000325455.5:c.500G>T	p.Arg167Leu	p.R167L	ENST00000325455	NM_001202474.3	167	cGg/cTg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48649570	48649570	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	165	997	0	ENST00000376670.3:c.54T>A	p.Phe18Leu	p.F18L	ENST00000376670	NM_002049.3	18	ttT/ttA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	16	386	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89711875	89711875	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0032001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	30	572	0	ENST00000371953.3:c.493G>A	p.Gly165Arg	p.G165R	ENST00000371953	NM_000314.4	165	Gga/Aga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874604	35874604	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137868226		P-0032033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	184	660	2	ENST00000303115.3:c.760G>A	p.Ala254Thr	p.A254T	ENST00000303115	NM_002185.3	254	Gct/Act																																																																														
DIS3	22894	MSKCC	GRCh37	13	73347913	73347913	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	120	381	0	ENST00000377767.4:c.1148T>A	p.Ile383Asn	p.I383N	ENST00000377767	NM_014953.3	383	aTt/aAt																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26021068	26021078	+	frameshift_variant	Frame_Shift_Del	DEL	CGTCACTATCA	CGTCACTATCA	-			P-0032033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	81	491	0	ENST00000357647.3:c.351_361del	p.Val118AlafsTer?	p.V118Afs*?	ENST00000357647	NM_003529.2	117	cgCGTCACTATCAtg/cgtg																																																																														
NBN	4683	MSKCC	GRCh37	8	90955576	90955576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	144	569	0	ENST00000265433.3:c.2089G>A	p.Gly697Arg	p.G697R	ENST00000265433	NM_002485.4	697	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0032011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	62	668	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	106	875	0	ENST00000171111.5:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000171111	NM_203500.1	422	Gat/Aat																																																																														
STK11	6794	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	58	691	2	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15983790	15983790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0032011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	37	578	0	ENST00000268712.3:c.3332C>G	p.Ser1111Cys	p.S1111C	ENST00000268712	NM_006311.3	1111	tCt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175000	112175000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	76	216	0	ENST00000257430.4:c.3709C>T	p.Gln1237Ter	p.Q1237*	ENST00000257430	NM_000038.5	1237	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242444	55242445	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAATTCCCGTCGCTATC			P-0032014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	161	440	0	ENST00000275493.2:c.2217_2234dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	-/AAAATTCCCGTCGCTATC																																																																														
TP53	7157	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0032014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	152	467	1	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
HLA-B	3106	MSKCC	GRCh37	6	31324496	31324496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	15	70	0	ENST00000412585.2:c.312C>A	p.Asn104Lys	p.N104K	ENST00000412585	NM_005514.6	104	aaC/aaA																																																																														
DNAJB1	3337	MSKCC	GRCh37	19	14627453	14627453	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	227	682	0	ENST00000254322.2:c.617T>A	p.Ile206Asn	p.I206N	ENST00000254322	NM_006145.1	206	aTc/aAc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139818337	139818337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	75	641	0	ENST00000247668.2:c.1172G>A	p.Cys391Tyr	p.C391Y	ENST00000247668	NM_021138.3	391	tGt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	94	684	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906933	32906933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	53	483	0	ENST00000380152.3:c.1318C>T	p.Leu440Phe	p.L440F	ENST00000380152		440	Ctt/Ttt																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88420315	88420315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	47	453	1	ENST00000360948.2:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000360948	NM_001012338.2	791	Cgg/Tgg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467873	50467873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	44	413	0	ENST00000331340.3:c.1108G>A	p.Val370Met	p.V370M	ENST00000331340	NM_006060.4	370	Gtg/Atg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57859595	57859595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	73	545	1	ENST00000228682.2:c.649G>A	p.Gly217Arg	p.G217R	ENST00000228682	NM_005269.2	217	Ggg/Agg																																																																														
APC	324	MSKCC	GRCh37	5	112174936	112174936	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	39	241	0	ENST00000257430.4:c.3645del	p.Ser1215ArgfsTer50	p.S1215Rfs*50	ENST00000257430	NM_000038.5	1215	agT/ag																																																																														
JAK2	3717	MSKCC	GRCh37	9	5123041	5123042	+	missense_variant	Missense_Mutation	DNP	GT	GT	AG			P-0032017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	53	512	0	ENST00000381652.3:c.3097_3098delinsAG	p.Val1033Arg	p.V1033R	ENST00000381652	NM_004972.3	1033	GTg/AGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	89	385	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	82	724	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	187	535	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877149	89877149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	55	479	0	ENST00000389301.3:c.488G>A	p.Arg163His	p.R163H	ENST00000389301	NM_000135.2	163	cGt/cAt																																																																														
SRC	6714	MSKCC	GRCh37	20	36022675	36022675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	159	460	1	ENST00000358208.4:c.548C>A	p.Thr183Lys	p.T183K	ENST00000358208		183	aCg/aAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266047	41266630	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	AACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATC	AACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATC	-			P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	50	309	0	ENST00000349496.5:c.46_429del		p.X16_splice	ENST00000349496	NM_001904.3	16	gAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCaa/gaa																																																																														
APC	324	MSKCC	GRCh37	5	112154885	112154885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	93	594	1	ENST00000257430.4:c.1156G>A	p.Ala386Thr	p.A386T	ENST00000257430	NM_000038.5	386	Gca/Aca																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100906	41100906	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0032027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	26	527	0	ENST00000373198.4:c.1450G>A	p.Val484Ile	p.V484I	ENST00000373198	NM_133170.3	484	Gtt/Att																																																																														
MET	4233	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0032029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	166	942	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
ASXL2	55252	MSKCC	GRCh37	2	26022307	26022307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	72	779	0	ENST00000435504.4:c.350G>T	p.Ser117Ile	p.S117I	ENST00000435504		117	aGc/aTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68864639	68864639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	11	205	0	ENST00000288368.4:c.10G>A	p.Asp4Asn	p.D4N	ENST00000288368	NM_024870.2	4	Gac/Aac																																																																														
HLA-A	3105	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0032031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	24	591	0	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg																																																																														
ATRX	546	MSKCC	GRCh37	X	76907798	76907798	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	100	397	0	ENST00000373344.5:c.4363G>T	p.Glu1455Ter	p.E1455*	ENST00000373344	NM_000489.3	1455	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	157	751	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	467	840	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	97	428	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112170865	112170865	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	142	512	0	ENST00000257430.4:c.1958+3A>G		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																															
SMYD3	64754	MSKCC	GRCh37	1	246498726	246498726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	254	769	0	ENST00000388985.4:c.279C>A	p.Cys93Ter	p.C93*	ENST00000388985		93	tgC/tgA																																																																														
KIT	3815	MSKCC	GRCh37	4	55573425	55573425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	84	472	0	ENST00000288135.5:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000288135	NM_000222.2	363	Ccc/Tcc																																																																														
KIT	3815	MSKCC	GRCh37	4	55573451	55573451	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0032032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	56	369	0	ENST00000288135.5:c.1113C>G	p.Ile371Met	p.I371M	ENST00000288135	NM_000222.2	371	atC/atG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	298	513	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	199	427	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	760	679	0	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602337	10602337	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	900	907	0	ENST00000171111.5:c.1241A>T	p.Asn414Ile	p.N414I	ENST00000171111	NM_203500.1	414	aAc/aTc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209104608	209104608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	361	539	1	ENST00000345146.2:c.970G>A	p.Glu324Lys	p.E324K	ENST00000345146	NM_005896.2	324	Gag/Aag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68972978	68972978	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	140	505	0	ENST00000288368.4:c.1303G>T	p.Gly435Ter	p.G435*	ENST00000288368	NM_024870.2	435	Gga/Tga																																																																														
EPCAM	4072	MSKCC	GRCh37	2	47606170	47606170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	557	607	0	ENST00000263735.4:c.634G>A	p.Val212Met	p.V212M	ENST00000263735	NM_002354.2	212	Gtg/Atg																																																																														
DIS3	22894	MSKCC	GRCh37	13	73343051	73343051	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	269	278	0	ENST00000377767.4:c.1756-1G>T		p.X586_splice	ENST00000377767	NM_014953.3	586																																																																															
TCF3	6929	MSKCC	GRCh37	19	1627416	1627416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	731	743	0	ENST00000344749.5:c.308G>T	p.Gly103Val	p.G103V	ENST00000344749	NM_001136139.2	103	gGt/gTt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209104629	209104629	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	395	575	0	ENST00000345146.2:c.949C>A	p.Arg317Ser	p.R317S	ENST00000345146	NM_005896.2	317	Cgc/Agc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161720	47161720	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	265	423	0	ENST00000409792.3:c.4406T>A	p.Met1469Lys	p.M1469K	ENST00000409792	NM_014159.6	1469	aTg/aAg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187542313	187542313	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	830	400	0	ENST00000441802.2:c.5427T>A	p.Tyr1809Ter	p.Y1809*	ENST00000441802	NM_005245.3	1809	taT/taA																																																																														
SDHA	6389	MSKCC	GRCh37	5	225569	225570	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	71	137	0	ENST00000264932.6:c.348_349delinsTT	p.Glu116_Asp117delinsAspTyr	p.E116_D117delinsDY	ENST00000264932	NM_004168.2	116	gaGGac/gaTTac																																																																														
MDC1	9656	MSKCC	GRCh37	6	30671880	30671880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	835	920	0	ENST00000376406.3:c.5080G>T	p.Val1694Phe	p.V1694F	ENST00000376406	NM_014641.2	1694	Gtt/Ttt																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106526591	106526591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	461	496	0	ENST00000359195.3:c.2884C>A	p.His962Asn	p.H962N	ENST00000359195	NM_002649.2	962	Cat/Aat																																																																														
SMO	6608	MSKCC	GRCh37	7	128829156	128829156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	42	140	0	ENST00000249373.3:c.164C>G	p.Thr55Ser	p.T55S	ENST00000249373	NM_005631.4	55	aCt/aGt																																																																														
TEK	7010	MSKCC	GRCh37	9	27213539	27213539	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	206	658	1	ENST00000380036.4:c.2935A>T	p.Lys979Ter	p.K979*	ENST00000380036	NM_000459.3	979	Aaa/Taa																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139438477	139438477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0032035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	271	866	1	ENST00000277541.6:c.139G>T	p.Val47Phe	p.V47F	ENST00000277541	NM_017617.3	47	Gtc/Ttc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0032044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	31	296	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372254	55372254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	22	165	0	ENST00000297316.4:c.944C>T	p.Pro315Leu	p.P315L	ENST00000297316	NM_022454.3	315	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	161	748	0	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31368230	31368230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	187	535	1	ENST00000328111.2:c.101C>T	p.Ser34Leu	p.S34L	ENST00000328111	NM_006892.3	34	tCg/tTg																																																																														
H3F3C	440093	MSKCC	GRCh37	12	31944761	31944761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	16	306	0	ENST00000340398.3:c.340G>A	p.Ala114Thr	p.A114T	ENST00000340398	NM_001013699.2	114	Gct/Act																																																																														
RB1	5925	MSKCC	GRCh37	13	49039354	49039354	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0032052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	37	720	0	ENST00000267163.4:c.2339C>A	p.Ser780Ter	p.S780*	ENST00000267163	NM_000321.2	780	tCa/tAa																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103506156	103506156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0032052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	27	281	1	ENST00000355739.4:c.314C>T	p.Thr105Met	p.T105M	ENST00000355739	NM_000123.3	105	aCg/aTg																																																																														
MALT1	10892	MSKCC	GRCh37	18	56367745	56367745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0032052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	27	459	0	ENST00000348428.3:c.571C>T	p.Arg191Ter	p.R191*	ENST00000348428	NM_006785.3	191	Cga/Tga																																																																														
RBM10	8241	MSKCC	GRCh37	X	47030470	47030470	+	intron_variant	Intron	SNP	G	G	A			P-0032052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	66	420	2	ENST00000329236.7:c.201+1573G>A		p.*67*	ENST00000329236	NM_001204466.1	67																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	244	484	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	81	459	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0031964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	34	168	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0031964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	34	168	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	105	686	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
KDR	3791	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	46	711	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																														
RAD21	5885	MSKCC	GRCh37	8	117868410	117868410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	38	488	0	ENST00000297338.2:c.932T>A	p.Ile311Lys	p.I311K	ENST00000297338	NM_006265.2	311	aTa/aAa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	37	484	1	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47164103	47164103	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	48	429	0	ENST00000409792.3:c.2023G>T	p.Gly675Ter	p.G675*	ENST00000409792	NM_014159.6	675	Gga/Tga																																																																														
FH	2271	MSKCC	GRCh37	1	241680490	241680490	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139642944		P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	71	598	0	ENST00000366560.3:c.259C>T	p.Arg87Cys	p.R87C	ENST00000366560	NM_000143.3	87	Cgc/Tgc																																																																														
CDC42	998	MSKCC	GRCh37	1	22408246	22408246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	79	658	1	ENST00000344548.3:c.137T>C	p.Ile46Thr	p.I46T	ENST00000344548	NM_001039802.1	46	aTt/aCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	TG			P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	121	577	1	ENST00000256078.4:c.34_35delinsCA	p.Gly12His	p.G12H	ENST00000256078	NM_033360.2	12	GGt/CAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574030	7574031	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATCT			P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	75	611	0	ENST00000269305.4:c.994-2_996dup	p.Gly334SerfsTer13	p.G334Sfs*13	ENST00000269305	NM_001126112.2	332	-/AGATC																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11097070	11097070	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	61	757	1	ENST00000344626.4:c.561C>A	p.Tyr187Ter	p.Y187*	ENST00000344626	NM_003072.3	187	taC/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	173	415	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	172	535	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578189	7578189	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0031827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	378	636	0	ENST00000269305.4:c.660T>G	p.Tyr220Ter	p.Y220*	ENST00000269305	NM_001126112.2	220	taT/taG																																																																														
ABL1	25	MSKCC	GRCh37	9	133759697	133759697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	262	479	1	ENST00000318560.5:c.2020C>T	p.Arg674Trp	p.R674W	ENST00000318560	NM_005157.4	674	Cgg/Tgg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47098898	47098898	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			955	216	805	0	ENST00000409792.3:c.6376G>T	p.Glu2126Ter	p.E2126*	ENST00000409792	NM_014159.6	2126	Gag/Tag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163374	47163387	+	frameshift_variant	Frame_Shift_Del	DEL	AACTTTTTTTACTC	AACTTTTTTTACTC	-			P-0031827-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	107	413	0	ENST00000409792.3:c.2739_2752del	p.Lys913AsnfsTer17	p.K913Nfs*17	ENST00000409792	NM_014159.6	913	aaGAGTAAAAAAAGTTca/aaca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	506	752	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
KDR	3791	MSKCC	GRCh37	4	55972913	55972913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	357	721	0	ENST00000263923.4:c.1477G>A	p.Gly493Arg	p.G493R	ENST00000263923	NM_002253.2	493	Gga/Aga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145662	11145662	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	343	572	0	ENST00000344626.4:c.4024G>T	p.Glu1342Ter	p.E1342*	ENST00000344626	NM_003072.3	1342	Gag/Tag																																																																														
RB1	5925	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	190	335	0	ENST00000267163.4:c.1215+1G>C		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																															
RAD54L	8438	MSKCC	GRCh37	1	46726508	46726508	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	301	484	1	ENST00000371975.4:c.587T>A	p.Leu196Ter	p.L196*	ENST00000371975	NM_003579.3	196	tTg/tAg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248159	59248159	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	22	70	0	ENST00000371222.2:c.584T>A	p.Leu195Gln	p.L195Q	ENST00000371222	NM_002228.3	195	cTg/cAg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57861983	57861983	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	228	419	0	ENST00000228682.2:c.1284del	p.Arg428SerfsTer2	p.R428Sfs*2	ENST00000228682	NM_005269.2	428	agA/ag																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259316	89259316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	278	493	0	ENST00000336596.2:c.460C>A	p.Gln154Lys	p.Q154K	ENST00000336596	NM_005233.5	154	Caa/Aaa																																																																														
GATA2	2624	MSKCC	GRCh37	3	128205097	128205097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	198	758	0	ENST00000341105.2:c.344C>G	p.Pro115Arg	p.P115R	ENST00000341105	NM_032638.4	115	cCc/cGc																																																																														
STK19	8859	MSKCC	GRCh37	6	31946741	31946741	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	244	691	0	ENST00000375331.2:c.629A>G	p.His210Arg	p.H210R	ENST00000375331	NM_004197.1	210	cAt/cGt																																																																														
TAP2	6891	MSKCC	GRCh37	6	32798189	32798189	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	173	576	0	ENST00000374899.4:c.1490A>T	p.Glu497Val	p.E497V	ENST00000374899	NM_018833.2	497	gAg/gTg																																																																														
ESR1	2099	MSKCC	GRCh37	6	152265556	152265556	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	352	588	1	ENST00000206249.3:c.1009T>G	p.Phe337Val	p.F337V	ENST00000206249	NM_000125.3	337	Ttc/Gtc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13978799	13978799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	469	672	2	ENST00000405192.2:c.308G>T	p.Cys103Phe	p.C103F	ENST00000405192	NM_001163147.1	103	tGc/tTc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913187	39913187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	274	200	0	ENST00000378444.4:c.4928A>G	p.Glu1643Gly	p.E1643G	ENST00000378444	NM_001123385.1	1643	gAg/gGg																																																																														
PARP1	142	MSKCC	GRCh37	1	226553707	226553707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	52	597	1	ENST00000366794.5:c.2453T>C	p.Val818Ala	p.V818A	ENST00000366794	NM_001618.3	818	gTt/gCt																																																																														
FH	2271	MSKCC	GRCh37	1	241671917	241671917	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	82	575	0	ENST00000366560.3:c.724C>G	p.Leu242Val	p.L242V	ENST00000366560	NM_000143.3	242	Ctt/Gtt																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93982122	93982122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	150	537	0	ENST00000369303.4:c.1343G>A	p.Gly448Glu	p.G448E	ENST00000369303	NM_004440.3	448	gGa/gAa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157521869	157521869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	79	471	1	ENST00000346085.5:c.4141G>A	p.Gly1381Arg	p.G1381R	ENST00000346085	NM_020732.3	1381	Ggg/Agg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593595	55593600	+	inframe_deletion	In_Frame_Del	DEL	AAGTAC	AAGTAC	-			P-0031934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	193	422	0	ENST00000288135.5:c.1662_1667del	p.Val555_Gln556del	p.V555_Q556del	ENST00000288135	NM_000222.2	554	gAAGTACag/gag																																																																														
MTOR	2475	MSKCC	GRCh37	1	11188078	11188078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	451	507	0	ENST00000361445.4:c.6016G>T	p.Val2006Phe	p.V2006F	ENST00000361445	NM_004958.3	2006	Gtc/Ttc																																																																														
EED	8726	MSKCC	GRCh37	11	85956293	85956293	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	150	210	0	ENST00000263360.6:c.22A>C	p.Thr8Pro	p.T8P	ENST00000263360	NM_003797.3	8	Act/Cct																																																																														
RB1	5925	MSKCC	GRCh37	13	48953742	48953742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	267	338	1	ENST00000267163.4:c.1345G>A	p.Gly449Arg	p.G449R	ENST00000267163	NM_000321.2	449	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	467	527	3	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
NF1	4763	MSKCC	GRCh37	17	29670024	29670035	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGAGTCCAGAG	TAGAGTCCAGAG	ATA			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	313	388	2	ENST00000358273.4:c.7063-3_7071delinsATA		p.X2355_splice	ENST00000358273	NM_001042492.2	2355																																																																															
AXIN2	8313	MSKCC	GRCh37	17	63534463	63534463	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	478	538	1	ENST00000307078.5:c.1060-2A>G		p.X354_splice	ENST00000307078	NM_004655.3	354																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48584593	48584593	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	342	464	1	ENST00000342988.3:c.766C>T	p.Gln256Ter	p.Q256*	ENST00000342988	NM_005359.5	256	Cag/Tag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231558	5231558	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	364	432	0	ENST00000357368.4:c.1918C>G	p.Arg640Gly	p.R640G	ENST00000357368	NM_002850.3	640	Cgc/Ggc																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291160	10291160	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	641	722	2	ENST00000340748.4:c.311A>G	p.Asn104Ser	p.N104S	ENST00000340748		104	aAt/aGt																																																																														
RHOA	387	MSKCC	GRCh37	3	49412900	49412900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	624	720	2	ENST00000418115.1:c.123C>G	p.Asn41Lys	p.N41K	ENST00000418115	NM_001664.2	41	aaC/aaG																																																																														
TP63	8626	MSKCC	GRCh37	3	189587119	189587119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	1155	432	3	ENST00000264731.3:c.1136G>A	p.Arg379His	p.R379H	ENST00000264731	NM_003722.4	379	cGt/cAt																																																																														
RASA1	5921	MSKCC	GRCh37	5	86628399	86628399	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	235	449	1	ENST00000274376.6:c.768C>G	p.Tyr256Ter	p.Y256*	ENST00000274376	NM_002890.2	256	taC/taG																																																																														
APC	324	MSKCC	GRCh37	5	112170777	112170780	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	428	709	0	ENST00000257430.4:c.1875_1878del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	625	CAGAca/ca																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8521499	8521499	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	540	694	0	ENST00000356435.5:c.739A>T	p.Ile247Phe	p.I247F	ENST00000356435		247	Atc/Ttc																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53223602	53223602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	363	474	1	ENST00000375401.3:c.3757C>G	p.Pro1253Ala	p.P1253A	ENST00000375401	NM_004187.3	1253	Ccg/Gcg																																																																														
APC	324	MSKCC	GRCh37	5	112175375	112175409	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACC	TCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACC	A			P-0031935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	14	240	0	ENST00000257430.4:c.4084_4118delinsA	p.Ser1362MetfsTer42	p.S1362Mfs*42	ENST00000257430	NM_000038.5	1362	TCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCt/At																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	54	634	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	154	801	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593505	48593506	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0031938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	34	376	0	ENST00000342988.3:c.1258_1259dup	p.Ala421ValfsTer16	p.A421Vfs*16	ENST00000342988	NM_005359.5	419	ggg/ggGCg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097751	27097751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	72	581	2	ENST00000324856.7:c.3344del	p.Pro1115GlnfsTer46	p.P1115Qfs*46	ENST00000324856	NM_006015.4	1114	Ccc/cc																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467993	50467993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	69	419	0	ENST00000331340.3:c.1228G>A	p.Gly410Ser	p.G410S	ENST00000331340	NM_006060.4	410	Ggt/Agt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981830	201981848	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGCAGCTGTGGCGCAG	CCCGGCAGCTGTGGCGCAG	-			P-0031939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	234	745	0	ENST00000359651.3:c.541_559del	p.Pro181GlufsTer67	p.P181Efs*67	ENST00000359651		181	CCCGGCAGCTGTGGCGCAGga/ga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49436583	49436583	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	92	809	0	ENST00000301067.7:c.5723del	p.Gly1908ValfsTer7	p.G1908Vfs*7	ENST00000301067	NM_003482.3	1908	gGt/gt																																																																														
CDH1	999	MSKCC	GRCh37	16	68835777	68835777	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	45	615	0	ENST00000261769.5:c.368A>C	p.His123Pro	p.H123P	ENST00000261769	NM_004360.3	123	cAc/cCc																																																																														
CDH1	999	MSKCC	GRCh37	16	68863659	68863659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	74	592	0	ENST00000261769.5:c.2398C>T	p.Arg800Cys	p.R800C	ENST00000261769	NM_004360.3	800	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187540551	187540555	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCA	CTTCA	-			P-0031939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	64	516	0	ENST00000441802.2:c.7185_7189del	p.Glu2396GlnfsTer3	p.E2396Qfs*3	ENST00000441802	NM_005245.3	2395	taTGAAGcc/tacc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151848660	151848663	+	frameshift_variant	Frame_Shift_Del	DEL	GAAA	GAAA	TAT			P-0031939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	48	292	1	ENST00000262189.6:c.12530_12533delinsATA	p.Leu4177HisfsTer41	p.L4177Hfs*41	ENST00000262189	NM_170606.2	4177	cTTTCt/cATAt																																																																														
TSC1	7248	MSKCC	GRCh37	9	135772116	135772116	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	67	474	0	ENST00000298552.3:c.3001T>G	p.Ser1001Ala	p.S1001A	ENST00000298552	NM_001162426.1	1001	Tca/Gca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	73	769	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0031941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	45	373	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2962849	2962849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	67	695	0	ENST00000396946.4:c.2059G>A	p.Ala687Thr	p.A687T	ENST00000396946	NM_032415.4	687	Gcg/Acg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1222	70	683	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	53	519	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	109	454	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	45	361	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	24	365	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	38	222	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	38	222	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	38	222	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
DDR2	4921	MSKCC	GRCh37	1	162745588	162745588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			794	102	458	0	ENST00000367921.3:c.2003G>A	p.Arg668His	p.R668H	ENST00000367921	NM_006182.2	668	cGc/cAc																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178097282	178097282	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	155	343	0	ENST00000397062.3:c.432del	p.Pro145LeufsTer28	p.P145Lfs*28	ENST00000397062	NM_006164.4	144	gtT/gt																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435463	18435463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	16	195	0	ENST00000266497.5:c.448A>G	p.Ser150Gly	p.S150G	ENST00000266497		150	Agt/Ggt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346505	89346505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			869	117	619	0	ENST00000301030.4:c.6445G>A	p.Ala2149Thr	p.A2149T	ENST00000301030	NM_001256183.1	2149	Gca/Aca																																																																														
MSH3	4437	MSKCC	GRCh37	5	79966104	79966104	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			752	121	435	0	ENST00000265081.6:c.768T>A	p.Tyr256Ter	p.Y256*	ENST00000265081	NM_002439.4	256	taT/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	58	456	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	44	400	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	173	686	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114917779	114917779	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	50	309	0	ENST00000543371.1:c.1270-1G>A		p.X424_splice	ENST00000543371	NM_001198531.1	424																																																																															
FLT4	2324	MSKCC	GRCh37	5	180040015	180040015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	75	775	1	ENST00000261937.6:c.3427G>A	p.Ala1143Thr	p.A1143T	ENST00000261937	NM_182925.4	1143	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112175344	112175345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTTGAATTTTCTTCAG			P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	24	288	0	ENST00000257430.4:c.4055_4070dup	p.Ala1358Ter	p.A1358*	ENST00000257430	NM_000038.5	1351	-/GTTGAATTTTCTTCAG																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039839	47039887	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTCGCATCAGTGCTGCCTCTGTGGCCAGCACTGCCATTGCTGCGGCC	CAGTCGCATCAGTGCTGCCTCTGTGGCCAGCACTGCCATTGCTGCGGCC	-			P-0025017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	35	461	0	ENST00000329236.7:c.952_1000del	p.Arg318GlyfsTer73	p.R318Gfs*73	ENST00000329236	NM_001204466.1	316	ggCAGTCGCATCAGTGCTGCCTCTGTGGCCAGCACTGCCATTGCTGCGGCC/gg																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	13	413	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	465	623	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176696757	176696757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	188	376	1	ENST00000439151.2:c.5458G>T	p.Val1820Leu	p.V1820L	ENST00000439151	NM_022455.4	1820	Gtg/Ttg																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11141453	11141453	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	327	595	0	ENST00000344626.4:c.3430G>T	p.Glu1144Ter	p.E1144*	ENST00000344626	NM_003072.3	1144	Gag/Tag																																																																														
ATRX	546	MSKCC	GRCh37	X	76937183	76937183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	73	740	0	ENST00000373344.5:c.3565C>A	p.Leu1189Ile	p.L1189I	ENST00000373344	NM_000489.3	1189	Cta/Ata																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778899	3778899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	151	549	0	ENST00000262367.5:c.6149G>T	p.Gly2050Val	p.G2050V	ENST00000262367	NM_004380.2	2050	gGg/gTg																																																																														
HGF	3082	MSKCC	GRCh37	7	81388023	81388023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	45	514	0	ENST00000222390.5:c.352C>A	p.Leu118Ile	p.L118I	ENST00000222390	NM_000601.4	118	Ctc/Atc																																																																														
TERT	7015	MSKCC	GRCh37	5	1294312	1294312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	297	560	1	ENST00000310581.5:c.689G>A	p.Arg230Gln	p.R230Q	ENST00000310581	NM_198253.2	230	cGa/cAa																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257634	16257635	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	103	426	0	ENST00000375759.3:c.4901dup	p.Pro1635ThrfsTer26	p.P1635Tfs*26	ENST00000375759	NM_015001.2	1633	-/C																																																																														
IGF2	3481	MSKCC	GRCh37	11	2161453	2161453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	178	559	0	ENST00000434045.2:c.74C>A	p.Thr25Asn	p.T25N	ENST00000434045	NM_001127598.1	25	aCt/aAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431673	49431673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	199	614	1	ENST00000301067.7:c.9466C>T	p.Pro3156Ser	p.P3156S	ENST00000301067	NM_003482.3	3156	Cca/Tca																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112527	115112527	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	381	672	0	ENST00000257566.3:c.1213C>G	p.Arg405Gly	p.R405G	ENST00000257566	NM_016569.3	405	Cgt/Ggt																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41134238	41134238	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	80	402	1	ENST00000379561.5:c.1390G>T	p.Glu464Ter	p.E464*	ENST00000379561	NM_002015.3	464	Gag/Tag																																																																														
TRAF7	84231	MSKCC	GRCh37	16	2220661	2220661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	190	639	0	ENST00000326181.6:c.278G>T	p.Arg93Leu	p.R93L	ENST00000326181	NM_032271.2	93	cGc/cTc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9923333	9923333	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	72	503	0	ENST00000330684.3:c.1954T>G	p.Phe652Val	p.F652V	ENST00000330684	NM_001134407.1	652	Ttc/Gtc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15989643	15989643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	237	369	0	ENST00000268712.3:c.3130G>T	p.Val1044Leu	p.V1044L	ENST00000268712	NM_006311.3	1044	Gtg/Ttg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17125841	17125841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	706	571	0	ENST00000285071.4:c.753G>T	p.Trp251Cys	p.W251C	ENST00000285071	NM_144997.5	251	tgG/tgT																																																																														
EZH1	2145	MSKCC	GRCh37	17	40857134	40857134	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	68	446	1	ENST00000428826.2:c.1907A>T	p.Asn636Ile	p.N636I	ENST00000428826		636	aAc/aTc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15295776	15295776	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	366	779	0	ENST00000263388.2:c.2351del	p.Gly784AlafsTer76	p.G784Afs*76	ENST00000263388	NM_000435.2	784	gGc/gc																																																																														
MSH2	4436	MSKCC	GRCh37	2	47657080	47657080	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	41	228	0	ENST00000233146.2:c.1276G>T	p.Gly426Ter	p.G426*	ENST00000233146	NM_000251.2	426	Gga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212286802	212286802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	63	394	0	ENST00000342788.4:c.2894C>G	p.Pro965Arg	p.P965R	ENST00000342788	NM_005235.2	965	cCt/cGt																																																																														
CUL3	8452	MSKCC	GRCh37	2	225342976	225342976	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	122	603	0	ENST00000264414.4:c.2116G>C	p.Ala706Pro	p.A706P	ENST00000264414	NM_003590.4	706	Gct/Cct																																																																														
SRC	6714	MSKCC	GRCh37	20	36031610	36031610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	113	602	0	ENST00000358208.4:c.1439G>T	p.Arg480Leu	p.R480L	ENST00000358208		480	cGg/cTg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40790111	40790111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	165	521	0	ENST00000373198.4:c.2620C>T	p.Pro874Ser	p.P874S	ENST00000373198	NM_133170.3	874	Cct/Tct																																																																														
WHSC1	7468	MSKCC	GRCh37	4	1940256	1940256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	197	279	0	ENST00000382891.5:c.1753G>T	p.Ala585Ser	p.A585S	ENST00000382891	NM_133335.3	585	Gca/Tca																																																																														
KDR	3791	MSKCC	GRCh37	4	55955141	55955141	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	134	324	0	ENST00000263923.4:c.3405-1G>A		p.X1135_splice	ENST00000263923	NM_002253.2	1135																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66201800	66201800	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	274	516	0	ENST00000273854.3:c.2702T>A	p.Met901Lys	p.M901K	ENST00000273854	NM_004439.5	901	aTg/aAg																																																																														
TET2	54790	MSKCC	GRCh37	4	106155504	106155504	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	68	341	0	ENST00000380013.4:c.405A>T	p.Glu135Asp	p.E135D	ENST00000380013	NM_001127208.2	135	gaA/gaT																																																																														
FAT1	2195	MSKCC	GRCh37	4	187541136	187541136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	170	357	0	ENST00000441802.2:c.6604G>T	p.Val2202Phe	p.V2202F	ENST00000441802	NM_005245.3	2202	Gtc/Ttc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187629353	187629353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	164	696	1	ENST00000441802.2:c.1629G>T	p.Trp543Cys	p.W543C	ENST00000441802	NM_005245.3	543	tgG/tgT																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149495409	149495409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	422	779	0	ENST00000261799.4:c.3238G>T	p.Val1080Leu	p.V1080L	ENST00000261799	NM_002609.3	1080	Gtg/Ttg																																																																														
HIST1H3A	8350	MSKCC	GRCh37	6	26020820	26020820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	159	314	0	ENST00000357647.3:c.103G>A	p.Gly35Ser	p.G35S	ENST00000357647	NM_003529.2	35	Ggc/Agc																																																																														
MDC1	9656	MSKCC	GRCh37	6	30672759	30672759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	367	786	0	ENST00000376406.3:c.4201G>T	p.Gly1401Cys	p.G1401C	ENST00000376406	NM_014641.2	1401	Ggc/Tgc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93955032	93955032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	42	275	0	ENST00000369303.4:c.2866G>T	p.Ala956Ser	p.A956S	ENST00000369303	NM_004440.3	956	Gcc/Tcc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8528764	8528764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	183	332	0	ENST00000356435.5:c.368G>T	p.Arg123Met	p.R123M	ENST00000356435		123	aGg/aTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139397783	139397783	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	105	476	0	ENST00000277541.6:c.5019-1G>T		p.X1673_splice	ENST00000277541	NM_017617.3	1673																																																																															
ATRX	546	MSKCC	GRCh37	X	76777841	76777841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	91	562	1	ENST00000373344.5:c.6875C>A	p.Pro2292Gln	p.P2292Q	ENST00000373344	NM_000489.3	2292	cCa/cAa																																																																														
XIAP	331	MSKCC	GRCh37	X	123020186	123020186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	138	748	0	ENST00000355640.3:c.674C>A	p.Pro225His	p.P225H	ENST00000355640		225	cCt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	88	416	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	63	767	1	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924382	131924382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	26	330	0	ENST00000265335.6:c.1055G>A	p.Arg352His	p.R352H	ENST00000265335		352	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577514	7577515	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGA			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	166	816	0	ENST00000269305.4:c.764_766dupTCA	p.Ile255dup	p.I255dup	ENST00000269305	NM_001126112.2	255	aca/aTCAca																																																																														
FLT1	2321	MSKCC	GRCh37	13	29004254	29004254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143093353		P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	56	442	0	ENST00000282397.4:c.1039G>A	p.Val347Ile	p.V347I	ENST00000282397	NM_002019.4	347	Gta/Ata																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18491480	18491480	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	41	395	0	ENST00000266497.5:c.1393G>T	p.Glu465Ter	p.E465*	ENST00000266497		465	Gag/Tag																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3823850	3823850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	93	798	0	ENST00000262367.5:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000262367	NM_004380.2	789	Gct/Act																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965623	25965623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	125	930	0	ENST00000435504.4:c.3583G>A	p.Val1195Met	p.V1195M	ENST00000435504		1195	Gtg/Atg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131924480	131924480	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139372231		P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	61	466	0	ENST00000265335.6:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000265335		385	Cgt/Tgt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50468296	50468296	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	90	563	0	ENST00000331340.3:c.1531C>T	p.Arg511Ter	p.R511*	ENST00000331340	NM_006060.4	511	Cga/Tga																																																																														
BCOR	54880	MSKCC	GRCh37	X	39922307	39922307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	59	351	0	ENST00000378444.4:c.3865G>A	p.Gly1289Ser	p.G1289S	ENST00000378444	NM_001123385.1	1289	Ggc/Agc																																																																														
CD274	29126	MSKCC	GRCh37	9	5465595	5465595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148141792		P-0031854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	112	337	0	ENST00000381577.3:c.779G>A	p.Arg260His	p.R260H	ENST00000381577	NM_014143.3	260	cGt/cAt																																																																														
MLH1	4292	MSKCC	GRCh37	3	37059000	37059000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	80	373	0	ENST00000231790.2:c.794G>A	p.Arg265His	p.R265H	ENST00000231790	NM_000249.3	265	cGt/cAt																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640698	3640698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	169	742	1	ENST00000294008.3:c.2941G>A	p.Gly981Arg	p.G981R	ENST00000294008	NM_032444.2	981	Ggg/Agg																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073432	8073432	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	161	548	0	ENST00000377482.5:c.1227del	p.Lys409AsnfsTer43	p.K409Nfs*43	ENST00000377482	NM_018948.3	409	aaA/aa																																																																														
MTOR	2475	MSKCC	GRCh37	1	11168275	11168275	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	214	567	0	ENST00000361445.4:c.7597A>G	p.Thr2533Ala	p.T2533A	ENST00000361445	NM_004958.3	2533	Aca/Gca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	157	476	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
SESN2	83667	MSKCC	GRCh37	1	28598843	28598843	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146400597		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	291	728	2	ENST00000253063.3:c.403G>A	p.Glu135Lys	p.E135K	ENST00000253063	NM_031459.4	135	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65321203	65321203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	140	394	1	ENST00000342505.4:c.1637C>T	p.Pro546Leu	p.P546L	ENST00000342505	NM_002227.2	546	cCc/cTc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	42	382	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339153	65339153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	141	495	0	ENST00000342505.4:c.383G>A	p.Arg128His	p.R128H	ENST00000342505	NM_002227.2	128	cGt/cAt																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156851292	156851292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	189	624	0	ENST00000524377.1:c.2249G>A	p.Arg750His	p.R750H	ENST00000524377	NM_002529.3	750	cGt/cAt																																																																														
DDR2	4921	MSKCC	GRCh37	1	162749983	162749983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	136	453	0	ENST00000367921.3:c.2515C>T	p.Arg839Cys	p.R839C	ENST00000367921	NM_006182.2	839	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	90	461	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	43	249	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114711026	114711028	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	106	179	0	ENST00000543371.1:c.254_256del	p.Glu85del	p.E85del	ENST00000543371	NM_001198531.1	84	GAA/-																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981827	101981827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	50	622	0	ENST00000282441.5:c.248C>T	p.Thr83Ile	p.T83I	ENST00000282441	NM_001130145.2	83	aCc/aTc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118343132	118343132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	88	375	0	ENST00000534358.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000534358	NM_005933.3	420	Cgg/Tgg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	432352	432352	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	53	199	0	ENST00000399788.2:c.2171A>T	p.Asp724Val	p.D724V	ENST00000399788	NM_001042603.1	724	gAc/gTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420784	49420784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	217	571	0	ENST00000301067.7:c.14965C>T	p.Arg4989Trp	p.R4989W	ENST00000301067	NM_003482.3	4989	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438046	49438046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	247	655	0	ENST00000301067.7:c.5125C>T	p.Arg1709Cys	p.R1709C	ENST00000301067	NM_003482.3	1709	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49440536	49440536	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	257	641	0	ENST00000301067.7:c.4274T>C	p.Val1425Ala	p.V1425A	ENST00000301067	NM_003482.3	1425	gTg/gCg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434452	121434452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	187	765	0	ENST00000257555.6:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000257555		406	Gcc/Acc																																																																														
POLE	5426	MSKCC	GRCh37	12	133219552	133219552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	138	569	0	ENST00000320574.5:c.4582G>A	p.Ala1528Thr	p.A1528T	ENST00000320574	NM_006231.2	1528	Gcc/Acc																																																																														
POLE	5426	MSKCC	GRCh37	12	133249827	133249827	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	121	398	0	ENST00000320574.5:c.1396A>G	p.Thr466Ala	p.T466A	ENST00000320574	NM_006231.2	466	Act/Gct																																																																														
FLT1	2321	MSKCC	GRCh37	13	28903854	28903854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	150	496	0	ENST00000282397.4:c.2605G>A	p.Ala869Thr	p.A869T	ENST00000282397	NM_002019.4	869	Gcc/Acc																																																																														
NTRK3	4916	MSKCC	GRCh37	15	88576090	88576090	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs199642370		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	104	642	0	ENST00000360948.2:c.1583C>T	p.Thr528Met	p.T528M	ENST00000360948	NM_001012338.2	528	aCg/aTg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3633171	3633171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	269	806	1	ENST00000294008.3:c.5080G>A	p.Ala1694Thr	p.A1694T	ENST00000294008	NM_032444.2	1694	Gcc/Acc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67662330	67662330	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	184	442	0	ENST00000264010.4:c.1576A>G	p.Ser526Gly	p.S526G	ENST00000264010	NM_006565.3	526	Agc/Ggc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72829701	72829701	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	190	720	0	ENST00000268489.5:c.6880C>T	p.Arg2294Ter	p.R2294*	ENST00000268489	NM_006885.3	2294	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	152	586	2	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	147	475	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89341523	89341524	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	187	537	1	ENST00000301030.4:c.7546_7547delinsTT	p.Arg2516Phe	p.R2516F	ENST00000301030	NM_001256183.1	2516	CGt/TTt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349356	89349356	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	264	945	2	ENST00000301030.4:c.3594del	p.Glu1199ArgfsTer119	p.E1199Rfs*119	ENST00000301030	NM_001256183.1	1198	aaA/aa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89349717	89349717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	142	854	1	ENST00000301030.4:c.3233C>T	p.Ala1078Val	p.A1078V	ENST00000301030	NM_001256183.1	1078	gCg/gTg																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89357122	89357122	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200994100		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	224	703	1	ENST00000301030.4:c.512G>A	p.Arg171His	p.R171H	ENST00000301030	NM_001256183.1	171	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	209	625	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	92	462	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17124920	17124920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	177	451	0	ENST00000285071.4:c.802C>T	p.Arg268Trp	p.R268W	ENST00000285071	NM_144997.5	268	Cgg/Tgg																																																																														
NF1	4763	MSKCC	GRCh37	17	29486046	29486046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	25	362	0	ENST00000358273.4:c.223G>A	p.Ala75Thr	p.A75T	ENST00000358273	NM_001042492.2	75	Gct/Act																																																																														
NF1	4763	MSKCC	GRCh37	17	29685596	29685596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	85	503	1	ENST00000358273.4:c.8069A>G	p.Tyr2690Cys	p.Y2690C	ENST00000358273	NM_001042492.2	2690	tAc/tGc																																																																														
RARA	5914	MSKCC	GRCh37	17	38504637	38504637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	239	660	0	ENST00000254066.5:c.248G>A	p.Arg83His	p.R83H	ENST00000254066	NM_000964.3	83	cGc/cAc																																																																														
EZH1	2145	MSKCC	GRCh37	17	40874920	40874920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	91	573	0	ENST00000428826.2:c.380C>T	p.Thr127Met	p.T127M	ENST00000428826		127	aCg/aTg																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59858199	59858199	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	97	400	0	ENST00000259008.2:c.1794+2T>C		p.X598_splice	ENST00000259008	NM_032043.2	598																																																																															
TCF3	6929	MSKCC	GRCh37	19	1612209	1612209	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	134	422	0	ENST00000344749.5:c.1810C>T	p.Arg604Ter	p.R604*	ENST00000344749	NM_001136139.2	604	Cga/Tga																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145614	11145614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	171	464	0	ENST00000344626.4:c.3976G>A	p.Glu1326Lys	p.E1326K	ENST00000344626	NM_003072.3	1326	Gag/Aag																																																																														
BRD4	23476	MSKCC	GRCh37	19	15375544	15375544	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	261	813	1	ENST00000263377.2:c.883A>C	p.Thr295Pro	p.T295P	ENST00000263377	NM_058243.2	295	Acc/Ccc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18278070	18278070	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	248	604	0	ENST00000222254.8:c.1690A>G	p.Lys564Glu	p.K564E	ENST00000222254	NM_005027.3	564	Aag/Gag																																																																														
UPF1	5976	MSKCC	GRCh37	19	18974420	18974420	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs189120195		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	121	345	0	ENST00000262803.5:c.2774C>T	p.Pro925Leu	p.P925L	ENST00000262803	NM_002911.3	925	cCg/cTg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	122	484	2	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383692	42383692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202097187		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	197	560	1	ENST00000221972.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000221972	NM_021601.3	156	gCg/gTg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	627	838	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
RRAS	6237	MSKCC	GRCh37	19	50139958	50139958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	325	696	1	ENST00000246792.3:c.371C>T	p.Thr124Met	p.T124M	ENST00000246792	NM_006270.3	124	aCg/aTg																																																																														
ALK	238	MSKCC	GRCh37	2	29456453	29456453	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	204	590	2	ENST00000389048.3:c.2465del	p.Gly822ValfsTer9	p.G822Vfs*9	ENST00000389048	NM_004304.4	822	gGt/gt																																																																														
XPO1	7514	MSKCC	GRCh37	2	61713075	61713075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	45	321	0	ENST00000401558.2:c.2336del	p.Pro779LeufsTer28	p.P779Lfs*28	ENST00000401558	NM_003400.3	779	cCt/ct																																																																														
ERCC3	2071	MSKCC	GRCh37	2	128046944	128046946	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	143	525	9	ENST00000285398.2:c.789_791del	p.Glu264del	p.E264del	ENST00000285398	NM_000122.1	263	gaAGAg/gag																																																																														
ACVR1	90	MSKCC	GRCh37	2	158622622	158622622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	94	449	1	ENST00000263640.3:c.877G>A	p.Asp293Asn	p.D293N	ENST00000263640	NM_001105.4	293	Gac/Aac																																																																														
CASP8	841	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	189	531	1	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212495230	212495230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	32	477	0	ENST00000342788.4:c.2036G>A	p.Ser679Asn	p.S679N	ENST00000342788	NM_005235.2	679	aGc/aAc																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212587117	212587117	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	45	342	0	ENST00000342788.4:c.883+1G>A		p.X295_splice	ENST00000342788	NM_005235.2	295																																																																															
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	28	244	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31386391	31386391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	179	529	0	ENST00000328111.2:c.1616G>A	p.Arg539Gln	p.R539Q	ENST00000328111	NM_006892.3	539	cGg/cAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40733321	40733321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	94	454	1	ENST00000373198.4:c.3485C>T	p.Ala1162Val	p.A1162V	ENST00000373198	NM_133170.3	1162	gCg/gTg																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29130441	29130441	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	157	545	0	ENST00000328354.6:c.269del	p.Pro90LeufsTer20	p.P90Lfs*20	ENST00000328354	NM_007194.3	90	cCt/ct																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161819	47161819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	134	378	0	ENST00000409792.3:c.4307C>T	p.Thr1436Ile	p.T1436I	ENST00000409792	NM_014159.6	1436	aCa/aTa																																																																														
MST1R	4486	MSKCC	GRCh37	3	49936552	49936552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	225	625	0	ENST00000296474.3:c.1375G>A	p.Val459Ile	p.V459I	ENST00000296474	NM_002447.2	459	Gtc/Atc																																																																														
BAP1	8314	MSKCC	GRCh37	3	52440297	52440297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	218	536	0	ENST00000460680.1:c.755G>A	p.Arg252His	p.R252H	ENST00000460680	NM_004656.3	252	cGt/cAt																																																																														
ATR	545	MSKCC	GRCh37	3	142178198	142178198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	92	340	0	ENST00000350721.4:c.7220G>A	p.Arg2407His	p.R2407H	ENST00000350721	NM_001184.3	2407	cGc/cAc																																																																														
KIT	3815	MSKCC	GRCh37	4	55564507	55564507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	128	408	0	ENST00000288135.5:c.395C>T	p.Thr132Met	p.T132M	ENST00000288135	NM_000222.2	132	aCg/aTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55968579	55968579	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	156	580	0	ENST00000263923.4:c.2084del	p.Pro695LeufsTer14	p.P695Lfs*14	ENST00000263923	NM_002253.2	695	cCt/ct																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66217127	66217127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	65	434	0	ENST00000273854.3:c.2488G>A	p.Glu830Lys	p.E830K	ENST00000273854	NM_004439.5	830	Gag/Aag																																																																														
RAD50	10111	MSKCC	GRCh37	5	131977992	131977992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	100	476	1	ENST00000265335.6:c.3875A>G	p.Asn1292Ser	p.N1292S	ENST00000265335		1292	aAc/aGc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709530	176709530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	75	367	1	ENST00000439151.2:c.5957G>A	p.Arg1986His	p.R1986H	ENST00000439151	NM_022455.4	1986	cGc/cAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180040015	180040015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	192	703	0	ENST00000261937.6:c.3427G>A	p.Ala1143Thr	p.A1143T	ENST00000261937	NM_182925.4	1143	Gcc/Acc																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94067986	94067986	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150543233		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	81	245	0	ENST00000369303.4:c.976G>A	p.Val326Ile	p.V326I	ENST00000369303	NM_004440.3	326	Gtt/Att																																																																														
SESN1	27244	MSKCC	GRCh37	6	109319849	109319849	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	172	455	0	ENST00000436639.2:c.839T>G	p.Ile280Ser	p.I280S	ENST00000436639	NM_014454.2	280	aTc/aGc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13946143	13946143	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	328	473	0	ENST00000405192.2:c.953del	p.Leu318TrpfsTer2	p.L318Wfs*2	ENST00000405192	NM_001163147.1	318	tTg/tg																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50367244	50367244	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	69	248	0	ENST00000331340.3:c.56del	p.Pro19LeufsTer2	p.P19Lfs*2	ENST00000331340	NM_006060.4	17	agC/ag																																																																														
HGF	3082	MSKCC	GRCh37	7	81340804	81340804	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	30	281	0	ENST00000222390.5:c.1437T>A	p.Asn479Lys	p.N479K	ENST00000222390	NM_000601.4	479	aaT/aaA																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508133	106508133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	47	189	0	ENST00000359195.3:c.127G>A	p.Val43Met	p.V43M	ENST00000359195	NM_002649.2	43	Gtg/Atg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106508932	106508932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	188	338	0	ENST00000359195.3:c.926C>T	p.Thr309Met	p.T309M	ENST00000359195	NM_002649.2	309	aCg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151879229	151879229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	225	527	1	ENST00000262189.6:c.5716C>T	p.Arg1906Ter	p.R1906*	ENST00000262189	NM_170606.2	1906	Cga/Tga																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	60	340	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
CDKN2B	1030	MSKCC	GRCh37	9	22006054	22006054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	223	532	1	ENST00000276925.6:c.349G>A	p.Val117Met	p.V117M	ENST00000276925	NM_004936.3	117	Gtg/Atg																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249884	110249884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	159	549	2	ENST00000374672.4:c.791C>T	p.Ala264Val	p.A264V	ENST00000374672	NM_004235.4	264	gCg/gTg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139405177	139405177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	207	699	0	ENST00000277541.6:c.2668G>A	p.Gly890Ser	p.G890S	ENST00000277541	NM_017617.3	890	Ggc/Agc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139418336	139418336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	237	769	1	ENST00000277541.6:c.236G>A	p.Arg79His	p.R79H	ENST00000277541	NM_017617.3	79	cGc/cAc																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44923043	44923046	+	frameshift_variant	Frame_Shift_Del	DEL	AACT	AACT	-			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	215	239	0	ENST00000377967.4:c.1905_1908del	p.Gln635HisfsTer55	p.Q635Hfs*55	ENST00000377967	NM_021140.2	635	cAACTa/ca																																																																														
MSH3	4437	MSKCC	GRCh37	5	80149980	80149980	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	38	402	0	ENST00000265081.6:c.2845C>T	p.Gln949Ter	p.Q949*	ENST00000265081	NM_002439.4	949	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	79	441	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	130	329	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	87	585	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	24	515	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989592	212989592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	167	329	0	ENST00000342788.4:c.119C>T	p.Ser40Phe	p.S40F	ENST00000342788	NM_005235.2	40	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	28	519	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56480341	56480341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	228	457	0	ENST00000267101.3:c.448G>A	p.Glu150Lys	p.E150K	ENST00000267101	NM_001982.3	150	Gag/Aag																																																																														
MSH2	4436	MSKCC	GRCh37	2	47707939	47707939	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	240	410	0	ENST00000233146.2:c.2563C>T	p.Gln855Ter	p.Q855*	ENST00000233146	NM_000251.2	855	Cag/Tag																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032045	26032045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	202	418	1	ENST00000244661.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000244661	NM_003537.3	82	Gat/Aat																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060925	38060925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	145	429	0	ENST00000250448.2:c.1064C>T	p.Ser355Leu	p.S355L	ENST00000250448	NM_004496.3	355	tCa/tTa																																																																														
SRSF2	6427	MSKCC	GRCh37	17	74733038	74733038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	245	446	0	ENST00000359995.5:c.205G>A	p.Glu69Lys	p.E69K	ENST00000359995	NM_001195427.1	69	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247243	153247243	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	465	389	0	ENST00000281708.4:c.1559A>T	p.Asp520Val	p.D520V	ENST00000281708	NM_033632.3	520	gAt/gTt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44910953	44910953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	151	112	0	ENST00000377967.4:c.655-1G>A		p.X219_splice	ENST00000377967	NM_021140.2	219																																																																															
ERCC5	2073	MSKCC	GRCh37	13	103504620	103504620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	145	277	0	ENST00000355739.4:c.241C>T	p.Pro81Ser	p.P81S	ENST00000355739	NM_000123.3	81	Cca/Tca																																																																														
SETD2	29072	MSKCC	GRCh37	3	47162747	47162747	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	407	413	0	ENST00000409792.3:c.3379C>G	p.Gln1127Glu	p.Q1127E	ENST00000409792	NM_014159.6	1127	Caa/Gaa																																																																														
VHL	7428	MSKCC	GRCh37	3	10183766	10183766	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200885420		P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	580	605	0	ENST00000256474.2:c.235C>T	p.Arg79Cys	p.R79C	ENST00000256474	NM_000551.3	79	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3832721	3832721	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	253	502	0	ENST00000262367.5:c.1537C>T	p.Gln513Ter	p.Q513*	ENST00000262367	NM_004380.2	513	Caa/Taa																																																																														
SOX2	6657	MSKCC	GRCh37	3	181430778	181430778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	276	669	0	ENST00000325404.1:c.630G>A	p.Met210Ile	p.M210I	ENST00000325404	NM_003106.3	210	atG/atA																																																																														
ALK	238	MSKCC	GRCh37	2	29456514	29456514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	342	648	0	ENST00000389048.3:c.2404G>A	p.Glu802Lys	p.E802K	ENST00000389048	NM_004304.4	802	Gaa/Aaa																																																																														
FOXP1	27086	MSKCC	GRCh37	3	71050137	71050137	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	262	335	0	ENST00000318789.4:c.1048C>T	p.Gln350Ter	p.Q350*	ENST00000318789	NM_032682.5	350	Cag/Tag																																																																														
MYCN	4613	MSKCC	GRCh37	2	16082599	16082599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	107	234	0	ENST00000281043.3:c.413G>A	p.Arg138His	p.R138H	ENST00000281043	NM_005378.4	138	cGc/cAc																																																																														
TET2	54790	MSKCC	GRCh37	4	106180841	106180841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	333	365	0	ENST00000380013.4:c.3869C>T	p.Ser1290Leu	p.S1290L	ENST00000380013	NM_001127208.2	1290	tCa/tTa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258691	115258691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	299	344	0	ENST00000369535.4:c.91G>A	p.Glu31Lys	p.E31K	ENST00000369535	NM_002524.4	31	Gaa/Aaa																																																																														
DIS3	22894	MSKCC	GRCh37	13	73349471	73349471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	188	471	0	ENST00000377767.4:c.865G>A	p.Glu289Lys	p.E289K	ENST00000377767	NM_014953.3	289	Gaa/Aaa																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10273887	10273887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	267	694	1	ENST00000330684.3:c.382C>T	p.His128Tyr	p.H128Y	ENST00000330684	NM_001134407.1	128	Cat/Tat																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8074358	8074358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	249	312	0	ENST00000377482.5:c.301G>A	p.Glu101Lys	p.E101K	ENST00000377482	NM_018948.3	101	Gaa/Aaa																																																																														
SDHB	6390	MSKCC	GRCh37	1	17359607	17359607	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	37	405	0	ENST00000375499.3:c.234G>C	p.Lys78Asn	p.K78N	ENST00000375499	NM_003000.2	78	aaG/aaC																																																																														
MPL	4352	MSKCC	GRCh37	1	43803571	43803571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	320	562	0	ENST00000372470.3:c.52C>T	p.Gln18Ter	p.Q18*	ENST00000372470	NM_005373.2	18	Caa/Taa																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736346	85736346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	340	374	0	ENST00000370580.1:c.301G>A	p.Asp101Asn	p.D101N	ENST00000370580	NM_003921.4	101	Gat/Aat																																																																														
IL10	3586	MSKCC	GRCh37	1	206944377	206944377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	36	452	0	ENST00000423557.1:c.253G>A	p.Glu85Lys	p.E85K	ENST00000423557	NM_000572.2	85	Gag/Aag																																																																														
CCND1	595	MSKCC	GRCh37	11	69458740	69458740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	213	409	0	ENST00000227507.2:c.555C>A	p.Phe185Leu	p.F185L	ENST00000227507	NM_053056.2	185	ttC/ttA																																																																														
EED	8726	MSKCC	GRCh37	11	85989556	85989556	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	163	368	0	ENST00000263360.6:c.1315C>T	p.Arg439Ter	p.R439*	ENST00000263360	NM_003797.3	439	Cga/Tga																																																																														
ATM	472	MSKCC	GRCh37	11	108115532	108115532	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	253	445	0	ENST00000278616.4:c.680C>G	p.Ser227Ter	p.S227*	ENST00000278616	NM_000051.3	227	tCa/tGa																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125513729	125513729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	274	497	0	ENST00000428830.2:c.857C>T	p.Ser286Phe	p.S286F	ENST00000428830	NM_001114121.2	286	tCt/tTt																																																																														
MDM2	4193	MSKCC	GRCh37	12	69233105	69233105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	190	323	0	ENST00000462284.1:c.970C>T	p.His324Tyr	p.H324Y	ENST00000462284	NM_002392.5	324	Cat/Tat																																																																														
MSI1	4440	MSKCC	GRCh37	12	120791158	120791158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	304	544	0	ENST00000257552.2:c.677C>T	p.Thr226Ile	p.T226I	ENST00000257552	NM_002442.3	226	aCc/aTc																																																																														
POLE	5426	MSKCC	GRCh37	12	133254001	133254001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	271	482	0	ENST00000320574.5:c.749G>A	p.Gly250Glu	p.G250E	ENST00000320574	NM_006231.2	250	gGa/gAa																																																																														
CDK8	1024	MSKCC	GRCh37	13	26927979	26927979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	338	434	0	ENST00000381527.3:c.418C>T	p.His140Tyr	p.H140Y	ENST00000381527	NM_001260.1	140	Cac/Tac																																																																														
BRCA2	675	MSKCC	GRCh37	13	32905152	32905152	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	184	345	0	ENST00000380152.3:c.778G>T	p.Glu260Ter	p.E260*	ENST00000380152		260	Gaa/Taa																																																																														
RB1	5925	MSKCC	GRCh37	13	48937011	48937029	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCACGGATAGCAAAACA	GTGCACGGATAGCAAAACA	CC			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	161	324	1	ENST00000267163.4:c.779_797delinsCC	p.Ser260ThrfsTer5	p.S260Tfs*5	ENST00000267163	NM_000321.2	260	aGTGCACGGATAGCAAAACAa/aCCa																																																																														
RB1	5925	MSKCC	GRCh37	13	49033964	49033964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	158	357	0	ENST00000267163.4:c.2101G>A	p.Asp701Asn	p.D701N	ENST00000267163	NM_000321.2	701	Gac/Aac																																																																														
TSHR	7253	MSKCC	GRCh37	14	81606118	81606118	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	319	495	0	ENST00000298171.2:c.788T>C	p.Leu263Pro	p.L263P	ENST00000298171	NM_000369.2	263	cTt/cCt																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40675112	40675112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	326	701	0	ENST00000249776.8:c.76C>T	p.Pro26Ser	p.P26S	ENST00000249776	NM_033286.3	26	Cca/Tca																																																																														
MGA	23269	MSKCC	GRCh37	15	42026732	42026732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	223	354	0	ENST00000219905.7:c.3856G>A	p.Glu1286Lys	p.E1286K	ENST00000219905	NM_001164273.1	1286	Gaa/Aaa																																																																														
CDH1	999	MSKCC	GRCh37	16	68772254	68772254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	329	676	0	ENST00000261769.5:c.103G>C	p.Glu35Gln	p.E35Q	ENST00000261769	NM_004360.3	35	Gag/Cag																																																																														
FANCA	2175	MSKCC	GRCh37	16	89828369	89828369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	243	455	0	ENST00000389301.3:c.2840C>T	p.Ser947Leu	p.S947L	ENST00000389301	NM_000135.2	947	tCa/tTa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866395	37866395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	410	649	0	ENST00000269571.5:c.700G>A	p.Asp234Asn	p.D234N	ENST00000269571		234	Gac/Aac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37866626	37866626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	422	545	0	ENST00000269571.5:c.793G>A	p.Glu265Lys	p.E265K	ENST00000269571		265	Gag/Aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435305	56435305	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	78	616	0	ENST00000407977.2:c.1832C>G	p.Ser611Cys	p.S611C	ENST00000407977		611	tCt/tGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435329	56435329	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	83	656	0	ENST00000407977.2:c.1808C>G	p.Ser603Ter	p.S603*	ENST00000407977		603	tCa/tGa																																																																														
BABAM1	29086	MSKCC	GRCh37	19	17379664	17379664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	203	434	0	ENST00000359435.4:c.49G>A	p.Glu17Lys	p.E17K	ENST00000359435	NM_001033549.1	17	Gag/Aag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17952291	17952291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	272	660	2	ENST00000458235.1:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000458235	NM_000215.3	350	cGg/cAg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953388	17953388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	312	688	0	ENST00000458235.1:c.598G>A	p.Asp200Asn	p.D200N	ENST00000458235	NM_000215.3	200	Gac/Aac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36221699	36221699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	390	796	0	ENST00000222270.7:c.5368G>A	p.Glu1790Lys	p.E1790K	ENST00000222270	NM_014727.1	1790	Gaa/Aaa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753537	42753537	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	281	699	0	ENST00000222329.4:c.727G>T	p.Glu243Ter	p.E243*	ENST00000222329	NM_006494.2	243	Gaa/Taa																																																																														
CIC	23152	MSKCC	GRCh37	19	42793213	42793213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	371	675	0	ENST00000575354.2:c.1105G>A	p.Asp369Asn	p.D369N	ENST00000575354	NM_015125.3	369	Gac/Aac																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45867689	45867689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	315	681	2	ENST00000391945.4:c.711C>A	p.His237Gln	p.H237Q	ENST00000391945	NM_000400.3	237	caC/caA																																																																														
AURKA	6790	MSKCC	GRCh37	20	54945393	54945393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	512	539	0	ENST00000312783.6:c.1033G>A	p.Glu345Lys	p.E345K	ENST00000312783	NM_198436.1	345	Gaa/Aaa																																																																														
MAPK1	5594	MSKCC	GRCh37	22	22162014	22162014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	336	615	0	ENST00000215832.6:c.241G>A	p.Glu81Lys	p.E81K	ENST00000215832	NM_002745.4	81	Gag/Aag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47163317	47163317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	410	436	0	ENST00000409792.3:c.2809C>A	p.Pro937Thr	p.P937T	ENST00000409792	NM_014159.6	937	Cct/Act																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178917522	178917522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	300	319	1	ENST00000263967.3:c.397G>T	p.Asp133Tyr	p.D133Y	ENST00000263967	NM_006218.2	133	Gat/Tat																																																																														
BCL6	604	MSKCC	GRCh37	3	187446976	187446976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	332	748	0	ENST00000232014.4:c.1217G>A	p.Arg406Gln	p.R406Q	ENST00000232014	NM_001130845.1	406	cGa/cAa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630446	187630446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	731	706	2	ENST00000441802.2:c.536G>A	p.Gly179Glu	p.G179E	ENST00000441802	NM_005245.3	179	gGa/gAa																																																																														
IL7R	3575	MSKCC	GRCh37	5	35876511	35876511	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	211	455	0	ENST00000303115.3:c.1303C>T	p.Gln435Ter	p.Q435*	ENST00000303115	NM_002185.3	435	Cag/Tag																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950754	38950754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	161	262	0	ENST00000357387.3:c.3196G>A	p.Glu1066Lys	p.E1066K	ENST00000357387	NM_152756.3	1066	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112102053	112102053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	123	261	0	ENST00000257430.4:c.166G>A	p.Glu56Lys	p.E56K	ENST00000257430	NM_000038.5	56	Gaa/Aaa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805369	32805369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	230	468	0	ENST00000374899.4:c.553G>A	p.Asp185Asn	p.D185N	ENST00000374899	NM_018833.2	185	Gac/Aac																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89791067	89791067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	44	59	0	ENST00000336032.3:c.454G>A	p.Ala152Thr	p.A152T	ENST00000336032	NM_006813.2	152	Gca/Aca																																																																														
RAD21	5885	MSKCC	GRCh37	8	117861262	117861262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	70	426	0	ENST00000297338.2:c.1627G>A	p.Asp543Asn	p.D543N	ENST00000297338	NM_006265.2	543	Gat/Aat																																																																														
GNAQ	2776	MSKCC	GRCh37	9	80646123	80646123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	21	43	0	ENST00000286548.4:c.29G>A	p.Cys10Tyr	p.C10Y	ENST00000286548	NM_002072.3	10	tGc/tAc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149500491	149500491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	63	548	0	ENST00000261799.4:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000261799	NM_002609.3	849	cGa/cAa																																																																														
VHL	7428	MSKCC	GRCh37	3	10188249	10188249	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	282	672	0	ENST00000256474.2:c.392A>T	p.Asn131Ile	p.N131I	ENST00000256474	NM_000551.3	131	aAc/aTc																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682447	52682447	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0031908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	86	397	0	ENST00000394830.3:c.726C>G	p.Tyr242Ter	p.Y242*	ENST00000394830	NM_018313.4	242	taC/taG																																																																														
LATS1	9113	MSKCC	GRCh37	6	150001296	150001296	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	19	416	0	ENST00000253339.5:c.2308T>A	p.Tyr770Asn	p.Y770N	ENST00000253339		770	Tat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	215	623	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63533939	63533942	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	118	387	0	ENST00000307078.5:c.1212_1215del	p.Glu405AlafsTer52	p.E405Afs*52	ENST00000307078	NM_004655.3	404	agAGAG/ag																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185146647	185146647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	119	440	0	ENST00000265026.3:c.278C>T	p.Ser93Leu	p.S93L	ENST00000265026	NM_004721.4	93	tCa/tTa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	85	433	0	ENST00000342988.3:c.1088G>C	p.Cys363Ser	p.C363S	ENST00000342988	NM_005359.5	363	tGt/tCt																																																																														
HIST1H3I	8354	MSKCC	GRCh37	6	27839699	27839699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	112	340	0	ENST00000328488.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000328488	NM_003533.2	132	cGa/cAa																																																																														
RET	5979	MSKCC	GRCh37	10	43615160	43615160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	110	779	0	ENST00000355710.3:c.2574C>G	p.Ile858Met	p.I858M	ENST00000355710	NM_020975.4	858	atC/atG																																																																														
TSC2	7249	MSKCC	GRCh37	16	2134468	2134468	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	240	750	0	ENST00000219476.3:c.4245G>C	p.Lys1415Asn	p.K1415N	ENST00000219476	NM_000548.3	1415	aaG/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	27	401	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105955	27105955	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	220	422	0	ENST00000324856.7:c.5566C>T	p.Gln1856Ter	p.Q1856*	ENST00000324856	NM_006015.4	1856	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0031925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	321	636	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32906916	32906919	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0031925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	167	341	0	ENST00000380152.3:c.1310_1313delAAGA	p.Lys437IlefsTer22	p.K437Ifs*22	ENST00000380152		434	aAAAGa/aa																																																																														
NF1	4763	MSKCC	GRCh37	17	29562791	29562791	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	203	416	0	ENST00000358273.4:c.3870+1G>A		p.X1290_splice	ENST00000358273	NM_001042492.2	1290																																																																															
FANCA	2175	MSKCC	GRCh37	16	89837023	89837023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	145	668	0	ENST00000389301.3:c.2171C>T	p.Thr724Met	p.T724M	ENST00000389301	NM_000135.2	724	aCg/aTg																																																																														
ALK	238	MSKCC	GRCh37	2	30143165	30143165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	408	531	1	ENST00000389048.3:c.361C>T	p.Arg121Trp	p.R121W	ENST00000389048	NM_004304.4	121	Cgg/Tgg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227660809	227660809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	35	452	0	ENST00000305123.5:c.2646G>C	p.Gln882His	p.Q882H	ENST00000305123	NM_005544.2	882	caG/caC																																																																														
RHOA	387	MSKCC	GRCh37	3	49397774	49397792	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGTTTGCCATATCTCTG	CCTGTTTGCCATATCTCTG	-			P-0031925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	206	672	0	ENST00000418115.1:c.432_450del	p.Arg145LeufsTer17	p.R145Lfs*17	ENST00000418115	NM_001664.2	144	ggCAGAGATATGGCAAACAGG/gg																																																																														
MED12	9968	MSKCC	GRCh37	X	70343015	70343015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	117	711	1	ENST00000374080.3:c.1556G>A	p.Arg519Gln	p.R519Q	ENST00000374080		519	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0031928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	149	646	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	198	662	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	342	737	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	319	653	0	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																																																														
SPOP	8405	MSKCC	GRCh37	17	47696461	47696461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	279	436	0	ENST00000347630.2:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000347630	NM_001007230.1	121	cGg/cAg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23641388	23641388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	59	932	0	ENST00000261584.4:c.2087C>T	p.Thr696Met	p.T696M	ENST00000261584	NM_024675.3	696	aCg/aTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	69129868	69129868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	174	314	1	ENST00000288368.4:c.4622C>T	p.Thr1541Met	p.T1541M	ENST00000288368	NM_024870.2	1541	aCg/aTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89468388	89468388	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	61	293	0	ENST00000336596.2:c.1922A>T	p.Lys641Ile	p.K641I	ENST00000336596	NM_005233.5	641	aAa/aTa																																																																														
TSC2	7249	MSKCC	GRCh37	16	2112989	2112989	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137854154		P-0023567-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			336	305	557	0	ENST00000219476.3:c.1378G>A	p.Ala460Thr	p.A460T	ENST00000219476	NM_000548.3	460	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023567-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			87	535	536	5	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																														
ARID2	196528	MSKCC	GRCh37	12	46244226	46244226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023567-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			264	172	388	0	ENST00000334344.6:c.2320C>G	p.Pro774Ala	p.P774A	ENST00000334344	NM_152641.2	774	Cca/Gca																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10602379	10602379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023567-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			532	392	877	2	ENST00000171111.5:c.1199C>G	p.Thr400Ser	p.T400S	ENST00000171111	NM_203500.1	400	aCc/aGc																																																																														
HIST1H3H	8357	MSKCC	GRCh37	6	27778143	27778143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023567-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			351	284	640	0	ENST00000369163.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000369163	NM_003536.2	98	Gag/Aag																																																																														
IFNGR1	3459	MSKCC	GRCh37	6	137522066	137522066	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023567-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			359	153	327	0	ENST00000367739.4:c.813G>C	p.Lys271Asn	p.K271N	ENST00000367739	NM_000416.2	271	aaG/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	405	729	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg																																																																														
CUL3	8452	MSKCC	GRCh37	2	225365087	225365087	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			493	80	420	0	ENST00000264414.4:c.1603T>C	p.Phe535Leu	p.F535L	ENST00000264414	NM_003590.4	535	Ttc/Ctc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0031185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	232	490	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0031185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			236	74	325	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	206	337	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
MED12	9968	MSKCC	GRCh37	X	70361206	70361206	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	392	738	0	ENST00000374080.3:c.6394C>T	p.Gln2132Ter	p.Q2132*	ENST00000374080		2132	Cag/Tag																																																																														
AR	367	MSKCC	GRCh37	X	66765159	66765185	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0031185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			272	31	286	0	ENST00000374690.3:c.213_239del	p.Gln72_Gln80del	p.Q72_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0031683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	233	473	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
PGR	5241	MSKCC	GRCh37	11	100998784	100998784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	207	590	1	ENST00000325455.5:c.1018G>A	p.Ala340Thr	p.A340T	ENST00000325455	NM_001202474.3	340	Gcc/Acc																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182041	38182041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	236	437	0	ENST00000396334.3:c.665G>A	p.Ser222Asn	p.S222N	ENST00000396334	NM_002468.4	222	aGt/aAt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151875090	151875090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	39	95	0	ENST00000262189.6:c.7448del	p.Gly2483AspfsTer32	p.G2483Dfs*32	ENST00000262189	NM_170606.2	2483	gGa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	35	527	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0031688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	37	384	1	ENST00000304494.5:c.204_205delinsTT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcTTag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0031688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	37	384	1	ENST00000304494.5:c.204_205delinsTT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcTTag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0031688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	37	384	1	ENST00000304494.5:c.204_205delinsTT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcTTag																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098684	178098808	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTTTCCTTAAACCTGCCATAACTTTCCCAAGAACTGAGTACTCTGTACCTGGGAGTAGTTGGCAGATCCACTGGTTTCTGACTGGATGTGCTGGGCTGGCTGAATTGGGAGAAATTCACCTGTC	TGTTTCCTTAAACCTGCCATAACTTTCCCAAGAACTGAGTACTCTGTACCTGGGAGTAGTTGGCAGATCCACTGGTTTCTGACTGGATGTGCTGGGCTGGCTGAATTGGGAGAAATTCACCTGTC	-			P-0031688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	25	207	0	ENST00000397062.3:c.237_312+49del		p.X79_splice	ENST00000397062	NM_006164.4	79																																																																															
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	418	836	1	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCC			P-0031757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	2297	799	0	ENST00000269571.5:c.2339_2340insCGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCC																																																																														
NSD1	64324	MSKCC	GRCh37	5	176631283	176631283	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	71	433	0	ENST00000439151.2:c.1226A>C	p.Tyr409Ser	p.Y409S	ENST00000439151	NM_022455.4	409	tAt/tCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	71	469	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	60	369	1	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
NF1	4763	MSKCC	GRCh37	17	29654543	29654543	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	91	215	0	ENST00000358273.4:c.5296del	p.Ser1766GlnfsTer8	p.S1766Qfs*8	ENST00000358273	NM_001042492.2	1765	acT/ac																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138402610	138402610	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	64	398	0	ENST00000289153.2:c.2335A>C	p.Met779Leu	p.M779L	ENST00000289153	NM_006219.2	779	Atg/Ctg																																																																														
STAG2	10735	MSKCC	GRCh37	X	123164811	123164811	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0031826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	25	173	0	ENST00000218089.9:c.124A>G	p.Thr42Ala	p.T42A	ENST00000218089	NM_001042749.1	42	Act/Gct																																																																														
B2M	567	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0031828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	199	382	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0031828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	447	610	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68982086	68982086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	397	706	0	ENST00000288368.4:c.1460G>T	p.Cys487Phe	p.C487F	ENST00000288368	NM_024870.2	487	tGt/tTt																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484362	8484362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	277	349	0	ENST00000356435.5:c.3170G>T	p.Gly1057Val	p.G1057V	ENST00000356435		1057	gGg/gTg																																																																														
RB1	5925	MSKCC	GRCh37	13	48937093	48937093	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0031828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	146	157	0	ENST00000267163.4:c.861G>C	p.Glu287Asp	p.E287D	ENST00000267163	NM_000321.2	287	gaG/gaC																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101030	41101030	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	384	554	0	ENST00000373198.4:c.1326G>C	p.Gln442His	p.Q442H	ENST00000373198	NM_133170.3	442	caG/caC																																																																														
IRF4	3662	MSKCC	GRCh37	6	395912	395913	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0031828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	240	387	0	ENST00000380956.4:c.469_470delinsAA	p.Pro157Asn	p.P157N	ENST00000380956	NM_001195286.1	157	CCt/AAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139402531	139402533	+	missense_variant	Missense_Mutation	ONP	TGC	TGC	GAA			P-0031828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	367	721	1	ENST00000277541.6:c.3384_3386delinsTTC	p.His1129Ser	p.H1129S	ENST00000277541	NM_017617.3	1128	acGCAc/acTTCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	49	517	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	41	692	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040624	47040624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	87	369	0	ENST00000329236.7:c.1025G>A	p.Gly342Asp	p.G342D	ENST00000329236	NM_001204466.1	342	gGt/gAt																																																																														
MEN1	4221	MSKCC	GRCh37	11	64577232	64577242	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTCACGGCT	AGCTCACGGCT	-			P-0031836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	364	616	0	ENST00000337652.1:c.340_350del	p.Ser114GlyfsTer67	p.S114Gfs*67	ENST00000337652	NM_130803.2	114	AGCCGTGAGCTg/g																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120442	70120442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	115	840	1	ENST00000245479.2:c.1444G>A	p.Asp482Asn	p.D482N	ENST00000245479	NM_000346.3	482	Gac/Aac																																																																														
ATRX	546	MSKCC	GRCh37	X	76778788	76778788	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	294	588	0	ENST00000373344.5:c.6791A>C	p.Glu2264Ala	p.E2264A	ENST00000373344	NM_000489.3	2264	gAa/gCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	156	541	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	107	575	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40363231	40363231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	95	497	0	ENST00000397332.2:c.998C>T	p.Ala333Val	p.A333V	ENST00000397332	NM_001033082.2	333	gCg/gTg																																																																														
BRCA1	672	MSKCC	GRCh37	17	41245465	41245465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	224	746	0	ENST00000357654.3:c.2083G>A	p.Asp695Asn	p.D695N	ENST00000357654	NM_007294.3	695	Gat/Aat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	213	493	0	ENST00000263967.3:c.3012G>T	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atT																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061261	38061261	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	332	582	1	ENST00000250448.2:c.728A>G	p.Tyr243Cys	p.Y243C	ENST00000250448	NM_004496.3	243	tAc/tGc																																																																														
SMARCD1	6602	MSKCC	GRCh37	12	50479316	50479316	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	106	436	0	ENST00000394963.4:c.164G>C	p.Gly55Ala	p.G55A	ENST00000394963	NM_003076.4	55	gGa/gCa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115109742	115109745	+	frameshift_variant	Frame_Shift_Del	DEL	CGCG	CGCG	-			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	277	731	0	ENST00000257566.3:c.2133_2136del	p.Cys711TrpfsTer177	p.C711Wfs*177	ENST00000257566	NM_016569.3	711	tgCGCG/tg																																																																														
FLT3	2322	MSKCC	GRCh37	13	28636021	28636021	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	58	594	0	ENST00000241453.7:c.351T>G	p.His117Gln	p.H117Q	ENST00000241453	NM_004119.2	117	caT/caG																																																																														
BRCA2	675	MSKCC	GRCh37	13	32953901	32953901	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	34	391	0	ENST00000380152.3:c.8968T>C	p.Trp2990Arg	p.W2990R	ENST00000380152		2990	Tgg/Cgg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36252942	36252942	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	148	397	0	ENST00000300305.3:c.420C>G	p.Tyr140Ter	p.Y140*	ENST00000300305		140	taC/taG																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151859502	151859503	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	84	448	0	ENST00000262189.6:c.11159_11160del	p.Leu3720ArgfsTer4	p.L3720Rfs*4	ENST00000262189	NM_170606.2	3720	cTG/c																																																																														
FANCC	2176	MSKCC	GRCh37	9	98002975	98002975	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	27	507	0	ENST00000289081.3:c.301G>C	p.Glu101Gln	p.E101Q	ENST00000289081	NM_000136.2	101	Gaa/Caa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	127	419	0				ENST00000310581	NM_198253.2																																																																																
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	138	431	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10610345	10610346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTCCATGCCCTGCTCCCGCAGCCCG			P-0031840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	127	833	0	ENST00000171111.5:c.339_364dup	p.Val122AlafsTer44	p.V122Afs*44	ENST00000171111	NM_203500.1	122	gtg/gCGGGCTGCGGGAGCAGGGCATGGAGGtg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143181670	143181670	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	160	541	0	ENST00000262992.4:c.663A>C	p.Lys221Asn	p.K221N	ENST00000262992	NM_001101669.1	221	aaA/aaC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	176	432	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
BRCA1	672	MSKCC	GRCh37	17	41219645	41219645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	31	479	0	ENST00000357654.3:c.5054C>T	p.Thr1685Ile	p.T1685I	ENST00000357654	NM_007294.3	1685	aCt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	639	732	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	425	461	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	316	734	1	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
AR	367	MSKCC	GRCh37	X	66765159	66765197	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	78	231	0	ENST00000374690.3:c.201_239del	p.Gln68_Gln80del	p.Q68_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32188853	32188853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192478549		P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	273	700	1	ENST00000375023.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000375023	NM_004557.3	234	cGg/cAg																																																																														
DDR2	4921	MSKCC	GRCh37	1	162746114	162746114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	129	311	0	ENST00000367921.3:c.2237G>T	p.Arg746Leu	p.R746L	ENST00000367921	NM_006182.2	746	cGg/cTg																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89156933	89156933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	180	519	1	ENST00000336596.2:c.35G>T	p.Ser12Ile	p.S12I	ENST00000336596	NM_005233.5	12	aGc/aTc																																																																														
PDGFRB	5159	MSKCC	GRCh37	5	149499078	149499078	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	294	694	0	ENST00000261799.4:c.2750T>G	p.Ile917Ser	p.I917S	ENST00000261799	NM_002609.3	917	aTc/aGc																																																																														
IRF4	3662	MSKCC	GRCh37	6	393310	393310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	233	512	0	ENST00000380956.4:c.158C>A	p.Pro53His	p.P53H	ENST00000380956	NM_001195286.1	53	cCc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	12	537	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37873699	37873699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	158	700	1	ENST00000269571.5:c.1864G>T	p.Ala622Ser	p.A622S	ENST00000269571		622	Gca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	22	475	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	355	633	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	346	614	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692926	89692926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	146	605	0	ENST00000371953.3:c.410C>T	p.Ala137Val	p.A137V	ENST00000371953	NM_000314.4	137	gCa/gTa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822563	72822564	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCTGC			P-0031850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	104	553	0	ENST00000268489.5:c.9606_9611dup	p.Gln3203_Gln3204dup	p.Q3203_Q3204dup	ENST00000268489	NM_006885.3	3203	caa/caGCAGCAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0031866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	117	655	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101273	27101273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	38	488	0	ENST00000324856.7:c.4555C>T	p.Gln1519Ter	p.Q1519*	ENST00000324856	NM_006015.4	1519	Cag/Tag																																																																														
PREX2	80243	MSKCC	GRCh37	8	68939553	68939553	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	24	229	0	ENST00000288368.4:c.538T>G	p.Leu180Val	p.L180V	ENST00000288368	NM_024870.2	180	Ttg/Gtg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs202179869		P-0031866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	32	366	0	ENST00000342505.4:c.2580A>C	p.Lys860Asn	p.K860N	ENST00000342505	NM_002227.2	860	aaA/aaC																																																																														
UPF1	5976	MSKCC	GRCh37	19	18971733	18971733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	108	585	2	ENST00000262803.5:c.2399G>A	p.Arg800His	p.R800H	ENST00000262803	NM_002911.3	800	cGc/cAc																																																																														
FANCA	2175	MSKCC	GRCh37	16	89877338	89877338	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	73	417	0	ENST00000389301.3:c.425G>A	p.Arg142Lys	p.R142K	ENST00000389301	NM_000135.2	142	aGa/aAa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15965168	15965196	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGGCCTTGGCTTATTGAAGGGCCCCCA	GCAGGCCTTGGCTTATTGAAGGGCCCCCA	-			P-0031866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	57	304	0	ENST00000268712.3:c.5400_5428del	p.Gly1801SerfsTer33	p.G1801Sfs*33	ENST00000268712	NM_006311.3	1800	gcTGGGGGCCCTTCAATAAGCCAAGGCCTGCca/gcca																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46265174	46265176	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0031866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	34	303	0	ENST00000371998.3:c.2045_2047del	p.His682del	p.H682del	ENST00000371998		682	CAC/-																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56180546	56180546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	46	272	0	ENST00000399503.3:c.3875G>A	p.Arg1292Lys	p.R1292K	ENST00000399503	NM_005921.1	1292	aGa/aAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8484299	8484299	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	62	464	0	ENST00000356435.5:c.3233A>G	p.Glu1078Gly	p.E1078G	ENST00000356435		1078	gAg/gGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579390	7579400	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAGGGACAG	GGAAGGGACAG	T			P-0031866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	179	572	0	ENST00000269305.4:c.287_297delinsA	p.Ser96TyrfsTer24	p.S96Yfs*24	ENST00000269305	NM_001126112.2	96	tCTGTCCCTTCC/tA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	21	421	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0031868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	18	369	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
ARID2	196528	MSKCC	GRCh37	12	46245712	46245712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	28	322	0	ENST00000334344.6:c.3806C>T	p.Pro1269Leu	p.P1269L	ENST00000334344	NM_152641.2	1269	cCg/cTg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47129625	47129625	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	26	412	0	ENST00000409792.3:c.5255T>G	p.Leu1752Arg	p.L1752R	ENST00000409792	NM_014159.6	1752	cTt/cGt																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0031869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	55	610	0	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	123	764	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																														
PGR	5241	MSKCC	GRCh37	11	100922258	100922258	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	14	329	2	ENST00000325455.5:c.2254C>T	p.Gln752Ter	p.Q752*	ENST00000325455	NM_001202474.3	752	Cag/Tag																																																																														
SDHAF2	54949	MSKCC	GRCh37	11	61205550	61205550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	63	448	0	ENST00000301761.2:c.335C>T	p.Pro112Leu	p.P112L	ENST00000301761	NM_017841.2	112	cCt/cTt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1619384	1619385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCA			P-0031869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	57	782	0	ENST00000344749.5:c.1253_1256dup	p.Pro420AlafsTer56	p.P420Afs*56	ENST00000344749	NM_001136139.2	419	ctg/ctTGCTg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98231364	98231364	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	100	602	0	ENST00000331920.6:c.1919del	p.Ser640ThrfsTer53	p.S640Tfs*53	ENST00000331920	NM_000264.3	640	aGc/ac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	55	296	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	227	597	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
NSD1	64324	MSKCC	GRCh37	5	176709505	176709505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	50	369	0	ENST00000439151.2:c.5932G>A	p.Glu1978Lys	p.E1978K	ENST00000439151	NM_022455.4	1978	Gaa/Aaa																																																																														
RHOA	387	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11552761		P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	110	579	0	ENST00000418115.1:c.50G>C	p.Gly17Ala	p.G17A	ENST00000418115	NM_001664.2	17	gGa/gCa																																																																														
KIT	3815	MSKCC	GRCh37	4	55573436	55573436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	34	247	0	ENST00000288135.5:c.1098G>T	p.Glu366Asp	p.E366D	ENST00000288135	NM_000222.2	366	gaG/gaT																																																																														
NTRK1	4914	MSKCC	GRCh37	1	156846300	156846300	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150579345		P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	111	613	1	ENST00000524377.1:c.1741G>A	p.Glu581Lys	p.E581K	ENST00000524377	NM_002529.3	581	Gag/Aag																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032071	26032071	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	96	302	0	ENST00000244661.2:c.218G>C	p.Arg73Pro	p.R73P	ENST00000244661	NM_003537.3	73	cGa/cCa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118355576	118355576	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	68	392	0	ENST00000534358.1:c.4219-1G>A		p.X1407_splice	ENST00000534358	NM_005933.3	1407																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49420619	49420619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	183	513	0	ENST00000301067.7:c.15130G>A	p.Asp5044Asn	p.D5044N	ENST00000301067	NM_003482.3	5044	Gat/Aat																																																																														
ATM	472	MSKCC	GRCh37	11	108175422	108175422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	105	270	0	ENST00000278616.4:c.5517G>C	p.Gln1839His	p.Q1839H	ENST00000278616	NM_000051.3	1839	caG/caC																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118352680	118352689	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGCAGGTC	CAAGCAGGTC	-			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	155	387	0	ENST00000534358.1:c.3885_3894del	p.Lys1296ProfsTer57	p.K1296Pfs*57	ENST00000534358	NM_005933.3	1295	agCAAGCAGGTC/ag																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118355688	118355688	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	61	420	0	ENST00000534358.1:c.4330G>C	p.Glu1444Gln	p.E1444Q	ENST00000534358	NM_005933.3	1444	Gag/Cag																																																																														
FLT1	2321	MSKCC	GRCh37	13	29008333	29008333	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	49	245	0	ENST00000282397.4:c.538G>C	p.Asp180His	p.D180H	ENST00000282397	NM_002019.4	180	Gat/Cat																																																																														
MAX	4149	MSKCC	GRCh37	14	65569021	65569021	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	132	367	0	ENST00000358664.4:c.36+1G>T		p.X12_splice	ENST00000358664	NM_002382.4	12																																																																															
DICER1	23405	MSKCC	GRCh37	14	95595950	95595950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	89	326	0	ENST00000343455.3:c.593C>T	p.Ser198Leu	p.S198L	ENST00000343455	NM_177438.2	198	tCa/tTa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3789643	3789643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	145	387	0	ENST00000262367.5:c.4216G>T	p.Asp1406Tyr	p.D1406Y	ENST00000262367	NM_004380.2	1406	Gat/Tat																																																																														
PLCG2	5336	MSKCC	GRCh37	16	81942049	81942049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	137	375	0	ENST00000359376.3:c.1586G>A	p.Gly529Glu	p.G529E	ENST00000359376	NM_002661.3	529	gGg/gAg																																																																														
STAT3	6774	MSKCC	GRCh37	17	40489460	40489460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	72	425	0	ENST00000264657.5:c.790G>A	p.Glu264Lys	p.E264K	ENST00000264657	NM_139276.2	264	Gaa/Aaa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17953259	17953259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	254	658	0	ENST00000458235.1:c.727G>C	p.Glu243Gln	p.E243Q	ENST00000458235	NM_000215.3	243	Gag/Cag																																																																														
CCNE1	898	MSKCC	GRCh37	19	30308132	30308132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	298	453	0	ENST00000262643.3:c.269C>T	p.Ser90Leu	p.S90L	ENST00000262643	NM_001238.2	90	tCa/tTa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223391	36223391	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	504	799	1	ENST00000222270.7:c.5941G>T	p.Glu1981Ter	p.E1981*	ENST00000222270	NM_014727.1	1981	Gag/Tag																																																																														
MLH1	4292	MSKCC	GRCh37	3	37038135	37038135	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	54	150	0	ENST00000231790.2:c.142N>G	p.Gln48Glu	p.Q48E	ENST00000231790	NM_000249.3	48	Caa/Gaa																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44928992	44928993	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0031872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	162	209	0	ENST00000377967.4:c.2093_2094del	p.His698ProfsTer31	p.H698Pfs*31	ENST00000377967	NM_021140.2	698	CAc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	16	393	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0031873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	11	177	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
DICER1	23405	MSKCC	GRCh37	14	95560476	95560476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	11	369	0	ENST00000343455.3:c.5113G>A	p.Glu1705Lys	p.E1705K	ENST00000343455	NM_177438.2	1705	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	145	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	86	568	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30715619	30715619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	41	233	0	ENST00000359013.4:c.1352C>T	p.Ala451Val	p.A451V	ENST00000359013	NM_001024847.2	451	gCt/gTt																																																																														
RPS6KA4	8986	MSKCC	GRCh37	11	64138879	64138879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	38	475	1	ENST00000334205.4:c.2246C>T	p.Ala749Val	p.A749V	ENST00000334205	NM_003942.2	749	gCc/gTc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863262	57863262	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	63	414	0	ENST00000228682.2:c.1357T>G	p.Ser453Ala	p.S453A	ENST00000228682	NM_005269.2	453	Tcc/Gcc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	142950056	142950056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	23	350	0	ENST00000262992.4:c.2654G>A	p.Arg885His	p.R885H	ENST00000262992	NM_001101669.1	885	cGc/cAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176562910	176562910	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	39	418	0	ENST00000439151.2:c.806A>T	p.Glu269Val	p.E269V	ENST00000439151	NM_022455.4	269	gAg/gTg																																																																														
CBL	867	MSKCC	GRCh37	11	119077183	119077183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	206	485	0	ENST00000264033.4:c.56G>T	p.Gly19Val	p.G19V	ENST00000264033	NM_005188.3	19	gGc/gTc																																																																														
STK19	8859	MSKCC	GRCh37	6	31940487	31940487	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	103	636	0	ENST00000375331.2:c.520C>G	p.Gln174Glu	p.Q174E	ENST00000375331	NM_004197.1	174	Cag/Gag																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805331	32805331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	132	349	0	ENST00000374899.4:c.591C>A	p.Cys197Ter	p.C197*	ENST00000374899	NM_018833.2	197	tgC/tgA																																																																														
NKX3-1	4824	MSKCC	GRCh37	8	23538970	23538970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	207	634	0	ENST00000380871.4:c.469C>A	p.Leu157Met	p.L157M	ENST00000380871	NM_006167.3	157	Ctg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	446	680	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	92	619	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	92	619	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	92	619	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0031881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	192	1158	2	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38945775	38945775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	44	386	0	ENST00000357387.3:c.4451G>A	p.Arg1484Gln	p.R1484Q	ENST00000357387	NM_152756.3	1484	cGa/cAa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412122	63412122	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	133	617	1	ENST00000330258.3:c.1045C>T	p.Gln349Ter	p.Q349*	ENST00000330258	NM_152424.3	349	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	44	621	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	49	883	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	57	653	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	57	653	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	57	653	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56492906	56492919	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAGCCAGCTGCA	GGCAGCCAGCTGCA	-			P-0031884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	18	353	0	ENST00000407977.2:c.20_33del	p.Leu7ProfsTer28	p.L7Pfs*28	ENST00000407977		7	cTGCAGCTGGCTGCC/c																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11145589	11145589	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	377	553	0	ENST00000344626.4:c.3952-1G>T		p.X1318_splice	ENST00000344626	NM_003072.3	1318																																																																															
ARID2	196528	MSKCC	GRCh37	12	46245288	46245288	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	404	479	0	ENST00000334344.6:c.3382C>T	p.Gln1128Ter	p.Q1128*	ENST00000334344	NM_152641.2	1128	Cag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221339	1221339	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	434	536	0	ENST00000326873.7:c.862G>T	p.Gly288Trp	p.G288W	ENST00000326873	NM_000455.4	288	Ggg/Tgg																																																																														
CSF1R	1436	MSKCC	GRCh37	5	149439329	149439329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	528	648	1	ENST00000286301.3:c.2066C>A	p.Pro689His	p.P689H	ENST00000286301	NM_005211.3	689	cCc/cAc																																																																														
ATM	472	MSKCC	GRCh37	11	108099978	108099978	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	544	426	1	ENST00000278616.4:c.259C>T	p.Gln87Ter	p.Q87*	ENST00000278616	NM_000051.3	87	Caa/Taa																																																																														
MGA	23269	MSKCC	GRCh37	15	42041485	42041485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	245	577	0	ENST00000219905.7:c.5680G>T	p.Val1894Leu	p.V1894L	ENST00000219905	NM_001164273.1	1894	Gtg/Ttg																																																																														
ERCC4	2072	MSKCC	GRCh37	16	14014111	14014111	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	278	578	0	ENST00000311895.7:c.89A>G	p.Asp30Gly	p.D30G	ENST00000311895	NM_005236.2	30	gAc/gGc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50828303	50828303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	171	439	0	ENST00000398568.2:c.2641G>T	p.Ala881Ser	p.A881S	ENST00000398568	NM_001042412.1	881	Gcc/Tcc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72993768	72993768	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	184	526	0	ENST00000268489.5:c.277A>T	p.Thr93Ser	p.T93S	ENST00000268489	NM_006885.3	93	Acc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579312	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CG	CG	GA			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	641	537	0	ENST00000269305.4:c.374_375delinsTC	p.Thr125Ile	p.T125I	ENST00000269305	NM_001126112.2	125	aCG/aTC																																																																														
NF1	4763	MSKCC	GRCh37	17	29657372	29657372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	270	590	1	ENST00000358273.4:c.5668G>T	p.Gly1890Cys	p.G1890C	ENST00000358273	NM_001042492.2	1890	Ggc/Tgc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37619289	37619289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	170	455	1	ENST00000447079.4:c.965G>T	p.Arg322Leu	p.R322L	ENST00000447079	NM_015083.1	322	cGa/cTa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740612	58740612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	553	600	1	ENST00000305921.3:c.1517C>G	p.Thr506Ser	p.T506S	ENST00000305921	NM_003620.3	506	aCt/aGt																																																																														
BRIP1	83990	MSKCC	GRCh37	17	59853812	59853812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	211	591	0	ENST00000259008.2:c.2047G>C	p.Val683Leu	p.V683L	ENST00000259008	NM_032043.2	683	Gtg/Ctg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120256	70120256	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	316	768	1	ENST00000245479.2:c.1258T>A	p.Tyr420Asn	p.Y420N	ENST00000245479	NM_000346.3	420	Tac/Aac																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10597372	10597372	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	539	775	0	ENST00000171111.5:c.1831G>T	p.Glu611Ter	p.E611*	ENST00000171111	NM_203500.1	611	Gag/Tag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662006	227662006	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	178	663	0	ENST00000305123.5:c.1449C>A	p.Tyr483Ter	p.Y483*	ENST00000305123	NM_005544.2	483	taC/taA																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944595	40944595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	163	422	0	ENST00000373198.4:c.1907C>T	p.Ser636Leu	p.S636L	ENST00000373198	NM_133170.3	636	tCa/tTa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155203	55155203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	199	569	0	ENST00000257290.5:c.2802C>A	p.Asn934Lys	p.N934K	ENST00000257290	NM_006206.4	934	aaC/aaA																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66197724	66197724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	281	559	0	ENST00000273854.3:c.2975G>T	p.Ser992Ile	p.S992I	ENST00000273854	NM_004439.5	992	aGt/aTt																																																																														
FAT1	2195	MSKCC	GRCh37	4	187560928	187560928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	167	417	1	ENST00000441802.2:c.3590C>G	p.Thr1197Arg	p.T1197R	ENST00000441802	NM_005245.3	1197	aCa/aGa																																																																														
ROS1	6098	MSKCC	GRCh37	6	117650514	117650514	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	575	699	0	ENST00000368508.3:c.5344A>T	p.Thr1782Ser	p.T1782S	ENST00000368508	NM_002944.2	1782	Aca/Tca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157527760	157527760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	202	485	0	ENST00000346085.5:c.5485C>T	p.His1829Tyr	p.H1829Y	ENST00000346085	NM_020732.3	1829	Cac/Tac																																																																														
ETV1	2115	MSKCC	GRCh37	7	14027793	14027793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	145	308	0	ENST00000405192.2:c.51G>C	p.Gln17His	p.Q17H	ENST00000405192	NM_001163147.1	17	caG/caC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974702	21974702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	184	407	0	ENST00000304494.5:c.125A>C	p.Asn42Thr	p.N42T	ENST00000304494	NM_000077.4	42	aAt/aCt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974702	21974702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	184	407	0	ENST00000304494.5:c.125A>C	p.Asn42Thr	p.N42T	ENST00000304494	NM_000077.4	42	aAt/aCt																																																																														
BTK	695	MSKCC	GRCh37	X	100626670	100626670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	334	263	0	ENST00000308731.7:c.260G>T	p.Ser87Ile	p.S87I	ENST00000308731	NM_000061.2	87	aGt/aTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	92	438	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	477	720	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41100948	41100948	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	185	584	0	ENST00000373198.4:c.1408C>T	p.Arg470Ter	p.R470*	ENST00000373198	NM_133170.3	470	Cga/Tga																																																																														
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	160	641	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																																																														
TET2	54790	MSKCC	GRCh37	4	106158215	106158215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111678678		P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	110	455	0	ENST00000380013.4:c.3116C>T	p.Ser1039Leu	p.S1039L	ENST00000380013	NM_001127208.2	1039	tCg/tTg																																																																														
EPHA7	2045	MSKCC	GRCh37	6	94120666	94120666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	126	541	0	ENST00000369303.4:c.385G>A	p.Glu129Lys	p.E129K	ENST00000369303	NM_004440.3	129	Gaa/Aaa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40944562	40944562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	153	564	0	ENST00000373198.4:c.1940C>T	p.Ser647Leu	p.S647L	ENST00000373198	NM_133170.3	647	tCg/tTg																																																																														
TET2	54790	MSKCC	GRCh37	4	106156493	106156493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	142	539	1	ENST00000380013.4:c.1394C>T	p.Pro465Leu	p.P465L	ENST00000380013	NM_001127208.2	465	cCa/cTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434732	49434732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	298	973	5	ENST00000301067.7:c.6821C>T	p.Ser2274Leu	p.S2274L	ENST00000301067	NM_003482.3	2274	tCg/tTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374309	118374309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	189	558	0	ENST00000534358.1:c.7702C>T	p.Pro2568Ser	p.P2568S	ENST00000534358	NM_005933.3	2568	Cca/Tca																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562773	95562773	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	125	552	0	ENST00000343455.3:c.4484C>A	p.Ser1495Ter	p.S1495*	ENST00000343455	NM_177438.2	1495	tCa/tAa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748729	43748729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1182	243	1048	0	ENST00000382044.4:c.2077C>T	p.Pro693Ser	p.P693S	ENST00000382044	NM_001141980.1	693	Ccg/Tcg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214377	36214377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	264	807	1	ENST00000222270.7:c.3031C>T	p.Arg1011Trp	p.R1011W	ENST00000222270	NM_014727.1	1011	Cgg/Tgg																																																																														
SOS1	6654	MSKCC	GRCh37	2	39213342	39213342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	275	949	0	ENST00000402219.2:c.3625G>A	p.Glu1209Lys	p.E1209K	ENST00000402219	NM_005633.3	1209	Gaa/Aaa																																																																														
STAG2	10735	MSKCC	GRCh37	X	123220421	123220421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	88	615	0	ENST00000218089.9:c.3078G>A	p.Met1026Ile	p.M1026I	ENST00000218089	NM_001042749.1	1026	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	134	598	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
IDH1	3417	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	47	316	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
CD274	29126	MSKCC	GRCh37	9	5462968	5462968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	48	493	0	ENST00000381577.3:c.529G>A	p.Gly177Ser	p.G177S	ENST00000381577	NM_014143.3	177	Ggt/Agt																																																																														
KDM5C	8242	MSKCC	GRCh37	X	53222448	53222481	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGCCGCCGCCGCCTCTCCAGGGCCCGGCCCCG	TCCGCCGCCGCCGCCTCTCCAGGGCCCGGCCCCG	-			P-0031889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	29	460	0	ENST00000375401.3:c.4351_4384del	p.Gly1452TrpfsTer15	p.G1452Wfs*15	ENST00000375401	NM_004187.3	1451	CGGGGCCGGGCCCTGGAGAGGCGGCGGCGGCGGAag/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	212	792	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																																																														
ROS1	6098	MSKCC	GRCh37	6	117658356	117658356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	197	1044	0	ENST00000368508.3:c.5227C>T	p.Pro1743Ser	p.P1743S	ENST00000368508	NM_002944.2	1743	Cca/Tca																																																																														
RB1	5925	MSKCC	GRCh37	13	48941629	48941629	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	87	305	0	ENST00000267163.4:c.940-1G>T		p.X314_splice	ENST00000267163	NM_000321.2	314																																																																															
PIK3CD	5293	MSKCC	GRCh37	1	9783188	9783188	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	138	530	0	ENST00000377346.4:c.2436del	p.Tyr813MetfsTer47	p.Y813Mfs*47	ENST00000377346	NM_005026.3	811	aCc/ac																																																																														
MTOR	2475	MSKCC	GRCh37	1	11298648	11298648	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	94	745	0	ENST00000361445.4:c.1813del	p.His605ThrfsTer7	p.H605Tfs*7	ENST00000361445	NM_004958.3	605	Cac/ac																																																																														
SPEN	23013	MSKCC	GRCh37	1	16257102	16257102	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	240	825	1	ENST00000375759.3:c.4367C>A	p.Ser1456Ter	p.S1456*	ENST00000375759	NM_015001.2	1456	tCa/tAa																																																																														
TBX3	6926	MSKCC	GRCh37	12	115120913	115120913	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	112	660	0	ENST00000257566.3:c.93C>G	p.Ser31Arg	p.S31R	ENST00000257566	NM_016569.3	31	agC/agG																																																																														
POLE	5426	MSKCC	GRCh37	12	133202352	133202352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	158	646	0	ENST00000320574.5:c.6536G>T	p.Gly2179Val	p.G2179V	ENST00000320574	NM_006231.2	2179	gGg/gTg																																																																														
DICER1	23405	MSKCC	GRCh37	14	95562368	95562368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	171	481	0	ENST00000343455.3:c.4889G>A	p.Arg1630His	p.R1630H	ENST00000343455	NM_177438.2	1630	cGc/cAc																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134968212	134968212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	165	734	0	ENST00000398015.3:c.2725G>C	p.Asp909His	p.D909H	ENST00000398015	NM_004441.4	909	Gac/Cac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332504	153332504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	107	536	0	ENST00000281708.4:c.452A>G	p.Asp151Gly	p.D151G	ENST00000281708	NM_033632.3	151	gAc/gGc																																																																														
NTRK2	4915	MSKCC	GRCh37	9	87570383	87570383	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	219	890	0	ENST00000277120.3:c.2123T>A	p.Ile708Asn	p.I708N	ENST00000277120		708	aTc/aAc																																																																														
CRLF2	64109	MSKCC	GRCh37	X	1321399	1321399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	196	826	1	ENST00000381566.1:c.356C>A	p.Pro119His	p.P119H	ENST00000381566		119	cCc/cAc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933254	39933254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	273	494	0	ENST00000378444.4:c.1345G>T	p.Asp449Tyr	p.D449Y	ENST00000378444	NM_001123385.1	449	Gat/Tat																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114275	73114275	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	16	223	0	ENST00000356692.5:c.911A>G	p.Asp304Gly	p.D304G	ENST00000356692		304	gAt/gGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	121	374	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	64	459	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141499	11141499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	81	546	0	ENST00000344626.4:c.3476G>A	p.Gly1159Glu	p.G1159E	ENST00000344626	NM_003072.3	1159	gGg/gAg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600480	10600480	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	81	600	1	ENST00000171111.5:c.1375C>T	p.Arg459Ter	p.R459*	ENST00000171111	NM_203500.1	459	Cga/Tga																																																																														
SDHC	0	MSKCC	GRCh37	1	161298244	161298248	+	missense_variant	Missense_Mutation	ONP	ATAGG	ATAGG	TTAGT			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	51	426	1	ENST00000367975.2:c.136_140delinsTTAGT	p.Ile46_Gly47delinsLeuVal	p.I46_G47delinsLV	ENST00000367975	NM_003001.3	46	ATAGGt/TTAGTt																																																																														
SDHD	0	MSKCC	GRCh37	11	111965528	111965528	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	38	264	0	ENST00000375549.3:c.315-1G>T		p.X105_splice	ENST00000375549	NM_003002.3	105																																																																															
ERBB4	0	MSKCC	GRCh37	2	212426716	212426716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	78	533	0	ENST00000342788.4:c.2399C>A	p.Pro800His	p.P800H	ENST00000342788	NM_005235.2	800	cCc/cAc																																																																														
KDR	0	MSKCC	GRCh37	4	55948199	55948199	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	56	462	0	ENST00000263923.4:c.3772A>G	p.Thr1258Ala	p.T1258A	ENST00000263923	NM_002253.2	1258	Acg/Gcg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143130152	143130152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	54	481	0	ENST00000262992.4:c.864G>C	p.Glu288Asp	p.E288D	ENST00000262992	NM_001101669.1	288	gaG/gaC																																																																														
APC	0	MSKCC	GRCh37	5	112174970	112174972	+	missense_variant	Missense_Mutation	ONP	AGG	AGG	TGT			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	48	310	0	ENST00000257430.4:c.3679_3681delinsTGT	p.Arg1227Cys	p.R1227C	ENST00000257430	NM_000038.5	1227	AGG/TGT																																																																														
RAD50	0	MSKCC	GRCh37	5	131930679	131930745	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTGAAAGTGATTTAGACAGGCTTAAAGAGGAAATTGAAAAATCATCAAAACAGCGAGGTAAGTTGT	TTTGAAAGTGATTTAGACAGGCTTAAAGAGGAAATTGAAAAATCATCAAAACAGCGAGGTAAGTTGT	GA			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	33	507	2	ENST00000265335.6:c.1912_1969+9delinsGA		p.X638_splice	ENST00000265335		638																																																																															
MDC1	0	MSKCC	GRCh37	6	30676075	30676075	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	44	453	0	ENST00000376406.3:c.2281G>T	p.Glu761Ter	p.E761*	ENST00000376406	NM_014641.2	761	Gag/Tag																																																																														
CARD11	0	MSKCC	GRCh37	7	2966387	2966387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	117	533	0	ENST00000396946.4:c.1793C>A	p.Ala598Asp	p.A598D	ENST00000396946	NM_032415.4	598	gCc/gAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974776	21974794	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAGCCAGTCAGCCGAA	GGCCAGCCAGTCAGCCGAA	-			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	26	177	0	ENST00000304494.5:c.33_51del	p.Ser12ArgfsTer8	p.S12Rfs*8	ENST00000304494	NM_000077.4	11	ccTTCGGCTGACTGGCTGGCC/cc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974776	21974794	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAGCCAGTCAGCCGAA	GGCCAGCCAGTCAGCCGAA	-			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	26	177	0	ENST00000304494.5:c.33_51del	p.Ser12ArgfsTer8	p.S12Rfs*8	ENST00000304494	NM_000077.4	11	ccTTCGGCTGACTGGCTGGCC/cc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87570347	87570347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	71	588	0	ENST00000277120.3:c.2087G>T	p.Arg696Met	p.R696M	ENST00000277120		696	aGg/aTg																																																																														
RAD50	0	MSKCC	GRCh37	5	131930678	131930742	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTGAAAGTGATTTAGACAGGCTTAAAGAGGAAATTGAAAAATCATCAAAACAGCGAGGTAAGT	TTTTGAAAGTGATTTAGACAGGCTTAAAGAGGAAATTGAAAAATCATCAAAACAGCGAGGTAAGT	-			P-0031686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	32	498	0	ENST00000265335.6:c.1912_1969+7del		p.X638_splice	ENST00000265335		638																																																																															
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	333	496	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
CCND2	0	MSKCC	GRCh37	12	4398032	4398032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	158	424	0	ENST00000261254.3:c.596C>T	p.Pro199Leu	p.P199L	ENST00000261254	NM_001759.3	199	cCg/cTg																																																																														
TET2	0	MSKCC	GRCh37	4	106155146	106155146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	55	369	0	ENST00000380013.4:c.47C>T	p.Pro16Leu	p.P16L	ENST00000380013	NM_001127208.2	16	cCa/cTa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528033	157528033	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	692	472	0	ENST00000346085.5:c.5758G>T	p.Glu1920Ter	p.E1920*	ENST00000346085	NM_020732.3	1920	Gag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29541525	29541525	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	14	413	0	ENST00000358273.4:c.1449C>A	p.Asp483Glu	p.D483E	ENST00000358273	NM_001042492.2	483	gaC/gaA																																																																														
SDHA	0	MSKCC	GRCh37	5	224610	224610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	31	350	0	ENST00000264932.6:c.286A>G	p.Thr96Ala	p.T96A	ENST00000264932	NM_004168.2	96	Acc/Gcc																																																																														
KMT2C	0	MSKCC	GRCh37	7	152007089	152007090	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	30	437	0	ENST00000262189.6:c.810dup	p.Val271SerfsTer19	p.V271Sfs*19	ENST00000262189	NM_170606.2	270	-/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	3089	427	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	481	545	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
ATM	0	MSKCC	GRCh37	11	108199963	108199963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0031693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	55	232	0	ENST00000278616.4:c.7305C>A	p.Asn2435Lys	p.N2435K	ENST00000278616	NM_000051.3	2435	aaC/aaA																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134883	41134883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	131	350	0	ENST00000379561.5:c.745T>C	p.Ser249Pro	p.S249P	ENST00000379561	NM_002015.3	249	Tct/Cct																																																																														
PAK7	0	MSKCC	GRCh37	20	9543659	9543659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	475	493	0	ENST00000353224.5:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000353224	NM_177990.2	499	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0031694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	147	534	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	175	700	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
TET1	0	MSKCC	GRCh37	10	70406103	70406104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0031694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	134	645	0	ENST00000373644.4:c.3618_3619insGT	p.Pro1207ValfsTer37	p.P1207Vfs*37	ENST00000373644	NM_030625.2	1206	ttt/ttTGt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857260	9857260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	67	593	0	ENST00000330684.3:c.4141A>G	p.Arg1381Gly	p.R1381G	ENST00000330684	NM_001134407.1	1381	Aga/Gga																																																																														
PTEN	0	MSKCC	GRCh37	10	89717771	89717771	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	43	419	0	ENST00000371953.3:c.796A>T	p.Lys266Ter	p.K266*	ENST00000371953	NM_000314.4	266	Aaa/Taa																																																																														
IGF2	0	MSKCC	GRCh37	11	2154404	2154404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	48	750	0	ENST00000434045.2:c.524G>T	p.Trp175Leu	p.W175L	ENST00000434045	NM_001127598.1	175	tGg/tTg																																																																														
TBX3	0	MSKCC	GRCh37	12	115120836	115120837	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	30	540	0	ENST00000257566.3:c.169_170delinsAT	p.Pro57Met	p.P57M	ENST00000257566	NM_016569.3	57	CCg/ATg																																																																														
TP53	0	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	34	645	0	ENST00000269305.4:c.773A>C	p.Glu258Ala	p.E258A	ENST00000269305	NM_001126112.2	258	gAa/gCa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46265328	46265328	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	40	409	0	ENST00000371998.3:c.2198A>T	p.Glu733Val	p.E733V	ENST00000371998		733	gAg/gTg																																																																														
MST1R	0	MSKCC	GRCh37	3	49940391	49940391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	50	779	0	ENST00000296474.3:c.652A>G	p.Ile218Val	p.I218V	ENST00000296474	NM_002447.2	218	Atc/Gtc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391052	89391052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	53	651	0	ENST00000336596.2:c.1118G>A	p.Cys373Tyr	p.C373Y	ENST00000336596	NM_005233.5	373	tGt/tAt																																																																														
TP63	0	MSKCC	GRCh37	3	189585692	189585692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	57	546	0	ENST00000264731.3:c.953G>A	p.Arg318His	p.R318H	ENST00000264731	NM_003722.4	318	cGc/cAc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1952847	1952847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	58	688	2	ENST00000382891.5:c.1930G>T	p.Ala644Ser	p.A644S	ENST00000382891	NM_133335.3	644	Gca/Tca																																																																														
EGFR	0	MSKCC	GRCh37	7	55249022	55249022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	103	607	0	ENST00000275493.2:c.2320G>T	p.Val774Leu	p.V774L	ENST00000275493	NM_005228.3	774	Gtg/Ttg																																																																														
HGF	0	MSKCC	GRCh37	7	81359042	81359042	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	45	510	0	ENST00000222390.5:c.919C>T	p.Gln307Ter	p.Q307*	ENST00000222390	NM_000601.4	307	Caa/Taa																																																																														
MET	0	MSKCC	GRCh37	7	116339605	116339605	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	36	461	0	ENST00000397752.3:c.467C>G	p.Ser156Trp	p.S156W	ENST00000397752	NM_000245.2	156	tCg/tGg																																																																														
XRCC2	0	MSKCC	GRCh37	7	152345912	152345912	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	49	610	0	ENST00000359321.1:c.658del	p.Asp220ThrfsTer2	p.D220Tfs*2	ENST00000359321	NM_005431.1	220	Gac/ac																																																																														
NTRK2	0	MSKCC	GRCh37	9	87636241	87636241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	34	593	0	ENST00000277120.3:c.2406G>T	p.Met802Ile	p.M802I	ENST00000277120		802	atG/atT																																																																														
MED12	0	MSKCC	GRCh37	X	70348490	70348490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	30	286	1	ENST00000374080.3:c.3397G>T	p.Ala1133Ser	p.A1133S	ENST00000374080		1133	Gcc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	177	584	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	10	568	0	ENST00000269305.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000269305	NM_001126112.2	196	cGa/cAa																																																																														
GATA3	0	MSKCC	GRCh37	10	8111511	8111512	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	204	499	0	ENST00000346208.3:c.997_998insC	p.Asn333ThrfsTer19	p.N333Tfs*19	ENST00000346208		333	aat/aCat																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	21	524	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89624268	89624268	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	160	370	0	ENST00000371953.3:c.42G>C	p.Arg14Ser	p.R14S	ENST00000371953	NM_000314.4	14	agG/agC																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279895	18279895	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	243	507	0	ENST00000222254.8:c.1980-2A>G		p.X660_splice	ENST00000222254	NM_005027.3	660																																																																															
BAP1	0	MSKCC	GRCh37	3	52442618	52442618	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	138	365	0	ENST00000460680.1:c.127G>C	p.Val43Leu	p.V43L	ENST00000460680	NM_004656.3	43	Gta/Cta																																																																														
MED12	0	MSKCC	GRCh37	X	70339267	70339267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	309	339	1	ENST00000374080.3:c.144G>T	p.Gln48His	p.Q48H	ENST00000374080		48	caG/caT																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88683396	88683396	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	116	411	0	ENST00000372037.3:c.1519A>G	p.Asn507Asp	p.N507D	ENST00000372037	NM_004329.2	507	Aat/Gat																																																																														
EP300	0	MSKCC	GRCh37	22	41573820	41573820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	43	750	0	ENST00000263253.7:c.6105G>C	p.Gln2035His	p.Q2035H	ENST00000263253	NM_001429.3	2035	caG/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	107	618	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1221227	1221227	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	364	855	0	ENST00000326873.7:c.752del	p.Gly251ValfsTer36	p.G251Vfs*36	ENST00000326873	NM_000455.4	250	acG/ac																																																																														
DIS3	0	MSKCC	GRCh37	13	73336123	73336125	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0031735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	25	386	0	ENST00000377767.4:c.2278_2280del	p.Asn760del	p.N760del	ENST00000377767	NM_014953.3	760	AAT/-																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163638	32163638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	75	511	0	ENST00000375023.3:c.5588C>A	p.Thr1863Lys	p.T1863K	ENST00000375023	NM_004557.3	1863	aCg/aAg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53244006	53244006	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	152	384	0	ENST00000375401.3:c.987del	p.Met329IlefsTer101	p.M329Ifs*101	ENST00000375401	NM_004187.3	329	atG/at																																																																														
MAX	0	MSKCC	GRCh37	14	65544682	65544682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	147	816	0	ENST00000358664.4:c.244C>T	p.Gln82Ter	p.Q82*	ENST00000358664	NM_002382.4	82	Cag/Tag																																																																														
MET	0	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0031737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	122	693	0	ENST00000397752.3:c.3028+3A>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
PRKD1	0	MSKCC	GRCh37	14	30069007	30069007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	105	583	0	ENST00000331968.5:c.1922G>C	p.Gly641Ala	p.G641A	ENST00000331968	NM_002742.2	641	gGt/gCt																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185184662	185184670	+	inframe_deletion	In_Frame_Del	DEL	CCCTGTTCG	CCCTGTTCG	-			P-0031737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	96	615	0	ENST00000265026.3:c.1554_1562del	p.Val520_Pro522del	p.V520_P522del	ENST00000265026	NM_004721.4	518	caCCCTGTTCGt/cat																																																																														
PTP4A1	0	MSKCC	GRCh37	6	64288362	64288363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	64	321	0	ENST00000370651.3:c.127dup	p.Thr43AsnfsTer8	p.T43Nfs*8	ENST00000370651	NM_003463.4	42	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	182	641	4	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0031738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	484	703	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	143	616	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678508	88678508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	39	563	1	ENST00000360948.2:c.1028G>T	p.Arg343Leu	p.R343L	ENST00000360948	NM_001012338.2	343	cGg/cTg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94201031	94201031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	41	477	0	ENST00000323929.3:c.1046G>A	p.Arg349Gln	p.R349Q	ENST00000323929	NM_005591.3	349	cGg/cAg																																																																														
ATM	0	MSKCC	GRCh37	11	108206638	108206638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	70	571	0	ENST00000278616.4:c.8218C>T	p.Gln2740Ter	p.Q2740*	ENST00000278616	NM_000051.3	2740	Cag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108206604	108206605	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	73	585	0	ENST00000278616.4:c.8184_8185delinsTT	p.Met2728_Gln2729delinsIleTer	p.M2728_Q2729delinsI*	ENST00000278616	NM_000051.3	2728	atGCaa/atTTaa																																																																														
ETV6	0	MSKCC	GRCh37	12	12022450	12022450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	68	864	0	ENST00000396373.4:c.556A>G	p.Ile186Val	p.I186V	ENST00000396373	NM_001987.4	186	Atc/Gtc																																																																														
FLT3	0	MSKCC	GRCh37	13	28623657	28623657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	72	615	0	ENST00000241453.7:c.900G>A	p.Met300Ile	p.M300I	ENST00000241453	NM_004119.2	300	atG/atA																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981917	70981917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	99	776	0	ENST00000276594.2:c.179C>A	p.Ala60Glu	p.A60E	ENST00000276594	NM_024504.3	60	gCg/gAg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8523525	8523525	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	25	425	0	ENST00000356435.5:c.680-1G>T		p.X227_splice	ENST00000356435		227																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	511	676	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	44	591	0	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0031744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	85	329	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	238	618	0	ENST00000371953.3:c.389G>C	p.Arg130Pro	p.R130P	ENST00000371953	NM_000314.4	130	cGa/cCa																																																																														
CCND1	0	MSKCC	GRCh37	11	69466022	69466022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	121	759	0	ENST00000227507.2:c.860C>A	p.Pro287His	p.P287H	ENST00000227507	NM_053056.2	287	cCc/cAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27059253	27059253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	263	705	0	ENST00000324856.7:c.1890del	p.Ser631AlafsTer16	p.S631Afs*16	ENST00000324856	NM_006015.4	630	ctG/ct																																																																														
SPOP	0	MSKCC	GRCh37	17	47699362	47699362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	240	628	0	ENST00000347630.2:c.146G>T	p.Gly49Val	p.G49V	ENST00000347630	NM_001007230.1	49	gGt/gTt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589627	67589628	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATAGATTAT			P-0031744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	78	502	0	ENST00000274335.5:c.1393_1401dup	p.Arg465_Tyr467dup	p.R465_Y467dup	ENST00000274335		465	gat/gATAGATTATat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	271	420	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	302	771	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0031746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	157	562	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	82	403	0	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306775	41306775	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	167	504	0	ENST00000373198.4:c.884C>A	p.Pro295Gln	p.P295Q	ENST00000373198	NM_133170.3	295	cCa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	209	599	1	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																														
CUL3	0	MSKCC	GRCh37	2	225342967	225342967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	146	607	0	ENST00000264414.4:c.2125C>T	p.Arg709Trp	p.R709W	ENST00000264414	NM_003590.4	709	Cgg/Tgg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0031748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	154	609	0	ENST00000304494.5:c.457+1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0031748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	154	609	0	ENST00000304494.5:c.457+1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0031748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	154	609	0	ENST00000304494.5:c.457+1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
KEAP1	0	MSKCC	GRCh37	19	10610127	10610127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	176	682	0	ENST00000171111.5:c.583G>T	p.Gly195Cys	p.G195C	ENST00000171111	NM_203500.1	195	Ggc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	462	853	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112128186	112128186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	105	563	1	ENST00000257430.4:c.689G>A	p.Arg230His	p.R230H	ENST00000257430	NM_000038.5	230	cGt/cAt																																																																														
NSD1	0	MSKCC	GRCh37	5	176631285	176631285	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	112	442	0	ENST00000439151.2:c.1228A>T	p.Arg410Trp	p.R410W	ENST00000439151	NM_022455.4	410	Agg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	431	557	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	186	600	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7578464	7578464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	265	712	0	ENST00000269305.4:c.466C>G	p.Arg156Gly	p.R156G	ENST00000269305	NM_001126112.2	156	Cgc/Ggc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149497245	149497245	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	222	609	2	ENST00000261799.4:c.3073delC	p.Leu1025CysfsTer20	p.L1025Cfs*20	ENST00000261799	NM_002609.3	1025	Ctg/tg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	171	427	2	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
RB1	0	MSKCC	GRCh37	13	48878062	48878062	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	79	147	0	ENST00000267163.4:c.19del	p.Arg7GlufsTer58	p.R7Efs*58	ENST00000267163	NM_000321.2	5	aCc/ac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	97	373	1	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	140	436	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
FAT1	0	MSKCC	GRCh37	4	187628571	187628571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	331	745	5	ENST00000441802.2:c.2411C>T	p.Ala804Val	p.A804V	ENST00000441802	NM_005245.3	804	gCg/gTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	191	632	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32163217	32163217	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	219	596	0	ENST00000375023.3:c.6009del	p.Lys2003AsnfsTer13	p.K2003Nfs*13	ENST00000375023	NM_004557.3	2003	aaA/aa																																																																														
TEK	0	MSKCC	GRCh37	9	27206739	27206739	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147231791		P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	227	587	0	ENST00000380036.4:c.2524C>T	p.Arg842Cys	p.R842C	ENST00000380036	NM_000459.3	842	Cgc/Tgc																																																																														
MCL1	0	MSKCC	GRCh37	1	150550876	150550876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	185	478	0	ENST00000369026.2:c.780C>A	p.Asn260Lys	p.N260K	ENST00000369026	NM_021960.4	260	aaC/aaA																																																																														
NUF2	0	MSKCC	GRCh37	1	163298650	163298650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	199	536	0	ENST00000271452.3:c.290C>A	p.Pro97His	p.P97H	ENST00000271452	NM_145697.2	97	cCt/cAt																																																																														
AKT3	0	MSKCC	GRCh37	1	243668608	243668608	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	220	459	1	ENST00000263826.5:c.1383C>G	p.Asp461Glu	p.D461E	ENST00000263826	NM_005465.4	461	gaC/gaG																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425275	49425275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	218	706	0	ENST00000301067.7:c.13213C>T	p.Gln4405Ter	p.Q4405*	ENST00000301067	NM_003482.3	4405	Cag/Tag																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871981	35871981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	554	486	2	ENST00000216797.5:c.632C>A	p.Ala211Asp	p.A211D	ENST00000216797	NM_020529.2	211	gCt/gAt																																																																														
STAT5A	0	MSKCC	GRCh37	17	40442026	40442026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	193	672	1	ENST00000345506.4:c.271G>A	p.Ala91Thr	p.A91T	ENST00000345506	NM_003152.3	91	Gcc/Acc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2213547	2213547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	380	543	2	ENST00000398665.3:c.1567G>A	p.Ala523Thr	p.A523T	ENST00000398665	NM_032482.2	523	Gcc/Acc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52693377	52693377	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	166	583	0	ENST00000322088.6:c.28C>G	p.Leu10Val	p.L10V	ENST00000322088	NM_014225.5	10	Ctg/Gtg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716301	52716301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	195	640	3	ENST00000322088.6:c.745C>A	p.Arg249Ser	p.R249S	ENST00000322088	NM_014225.5	249	Cgc/Agc																																																																														
KDR	0	MSKCC	GRCh37	4	55948123	55948123	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	147	446	0	ENST00000263923.4:c.3848G>T	p.Gly1283Val	p.G1283V	ENST00000263923	NM_002253.2	1283	gGt/gTt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66535328	66535328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	194	540	1	ENST00000273854.3:c.133C>T	p.Leu45Phe	p.L45F	ENST00000273854	NM_004439.5	45	Ctc/Ttc																																																																														
FAM175A	0	MSKCC	GRCh37	4	84388650	84388650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	92	506	0	ENST00000321945.7:c.638A>G	p.His213Arg	p.H213R	ENST00000321945	NM_139076.2	213	cAt/cGt																																																																														
APC	0	MSKCC	GRCh37	5	112173252	112173252	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	60	220	0	ENST00000257430.4:c.1961A>G	p.Gln654Arg	p.Q654R	ENST00000257430	NM_000038.5	654	cAa/cGa																																																																														
APC	0	MSKCC	GRCh37	5	112178153	112178153	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	125	411	1	ENST00000257430.4:c.6862C>T	p.Gln2288Ter	p.Q2288*	ENST00000257430	NM_000038.5	2288	Cag/Tag																																																																														
FLT4	0	MSKCC	GRCh37	5	180056778	180056778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	469	648	1	ENST00000261937.6:c.734G>T	p.Gly245Val	p.G245V	ENST00000261937	NM_182925.4	245	gGg/gTg																																																																														
MDC1	0	MSKCC	GRCh37	6	30672486	30672487	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	198	573	0	ENST00000376406.3:c.4473dup	p.Thr1492HisfsTer4	p.T1492Hfs*4	ENST00000376406	NM_014641.2	1491	-/C																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163800	32163800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	133	465	1	ENST00000375023.3:c.5426A>G	p.Gln1809Arg	p.Q1809R	ENST00000375023	NM_004557.3	1809	cAa/cGa																																																																														
ROS1	0	MSKCC	GRCh37	6	117658466	117658466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	93	590	0	ENST00000368508.3:c.5117G>A	p.Cys1706Tyr	p.C1706Y	ENST00000368508	NM_002944.2	1706	tGc/tAc																																																																														
AGO2	0	MSKCC	GRCh37	8	141551294	141551294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	267	681	1	ENST00000220592.5:c.2003G>A	p.Arg668His	p.R668H	ENST00000220592	NM_012154.3	668	cGc/cAc																																																																														
JAK2	0	MSKCC	GRCh37	9	5073742	5073742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	109	420	1	ENST00000381652.3:c.1821G>T	p.Lys607Asn	p.K607N	ENST00000381652	NM_004972.3	607	aaG/aaT																																																																														
CRLF2	0	MSKCC	GRCh37	X	1317430	1317430	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	190	534	0				ENST00000381566																																																																																	
ARAF	0	MSKCC	GRCh37	X	47430774	47430774	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	282	645	0	ENST00000377045.4:c.1739G>C	p.Ser580Thr	p.S580T	ENST00000377045	NM_001654.4	580	aGt/aCt																																																																														
AR	0	MSKCC	GRCh37	X	66931496	66931496	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	226	656	2	ENST00000374690.3:c.2138T>C	p.Leu713Pro	p.L713P	ENST00000374690	NM_000044.3	713	cTt/cCt																																																																														
ATRX	0	MSKCC	GRCh37	X	76938724	76938724	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	205	624	0	ENST00000373344.5:c.2024C>G	p.Ser675Cys	p.S675C	ENST00000373344	NM_000489.3	675	tCt/tGt																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123505236	123505236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	94	463	0	ENST00000371139.4:c.382C>T	p.Pro128Ser	p.P128S	ENST00000371139	NM_001114937.2	128	Cca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7577525	7577527	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0031751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	303	791	0	ENST00000269305.4:c.754_756del	p.Leu252del	p.L252del	ENST00000269305	NM_001126112.2	252	CTC/-																																																																														
PTEN	0	MSKCC	GRCh37	10	89624300	89624300	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	220	677	0	ENST00000371953.3:c.74T>A	p.Leu25Ter	p.L25*	ENST00000371953	NM_000314.4	25	tTg/tAg																																																																														
ID3	0	MSKCC	GRCh37	1	23885830	23885831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	71	383	0	ENST00000374561.5:c.87dup	p.Lys30GlufsTer6	p.K30Efs*6	ENST00000374561	NM_002167.4	29	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	336	574	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0031759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	252	555	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
GATA2	0	MSKCC	GRCh37	3	128204666	128204666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	83	731	0	ENST00000341105.2:c.775G>A	p.Asp259Asn	p.D259N	ENST00000341105	NM_032638.4	259	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	73	400	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	136	511	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112173345	112173345	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	36	225	0	ENST00000257430.4:c.2054G>A	p.Trp685Ter	p.W685*	ENST00000257430	NM_000038.5	685	tGg/tAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	49	268	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
APC	0	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	49	186	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																														
E2F3	0	MSKCC	GRCh37	6	20486948	20486948	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	58	288	0	ENST00000346618.3:c.913C>T	p.Arg305Ter	p.R305*	ENST00000346618	NM_001949.4	305	Cga/Tga																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212236	36212236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	84	578	1	ENST00000222270.7:c.1987G>A	p.Glu663Lys	p.E663K	ENST00000222270	NM_014727.1	663	Gaa/Aaa																																																																														
MED12	0	MSKCC	GRCh37	X	70341422	70341422	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	166	412	0	ENST00000374080.3:c.857A>C	p.Glu286Ala	p.E286A	ENST00000374080		286	gAa/gCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	204	319	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	0	MSKCC	GRCh37	5	1295250	1295254	+	upstream_gene_variant	5'Flank	ONP	GAGGG	GAGGG	AAGGA			P-0031794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	202	471	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	0	MSKCC	GRCh37	20	41385271	41385271	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	148	350	0	ENST00000373198.4:c.690G>A	p.Trp230Ter	p.W230*	ENST00000373198	NM_133170.3	230	tgG/tgA																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419992	41419992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	209	374	1	ENST00000373198.4:c.329C>T	p.Ser110Phe	p.S110F	ENST00000373198	NM_133170.3	110	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	211	494	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584540	48584541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	118	378	0	ENST00000342988.3:c.714dup	p.Gln239AlafsTer25	p.Q239Afs*25	ENST00000342988	NM_005359.5	238	ttg/ttGg																																																																														
SPEN	0	MSKCC	GRCh37	1	16255409	16255409	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			833	70	663	0	ENST00000375759.3:c.2674G>C	p.Asp892His	p.D892H	ENST00000375759	NM_015001.2	892	Gac/Cac																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43705331	43705331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	1030	723	1	ENST00000382044.4:c.5291G>A	p.Ser1764Asn	p.S1764N	ENST00000382044	NM_001141980.1	1764	aGt/aAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577595	7577598	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0013016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			146	1020	623	0	ENST00000269305.4:c.683_686delACTG	p.Asp228ValfsTer18	p.D228Vfs*18	ENST00000269305	NM_001126112.2	228	gACTGt/gt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15965425	15965425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			784	49	429	0	ENST00000268712.3:c.5381G>A	p.Arg1794Gln	p.R1794Q	ENST00000268712	NM_006311.3	1794	cGa/cAa																																																																														
NF1	0	MSKCC	GRCh37	17	29679417	29679417	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	232	535	0	ENST00000358273.4:c.7600A>G	p.Thr2534Ala	p.T2534A	ENST00000358273	NM_001042492.2	2534	Act/Gct																																																																														
SESN1	0	MSKCC	GRCh37	6	109315791	109315791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			709	204	596	0	ENST00000436639.2:c.994G>T	p.Val332Phe	p.V332F	ENST00000436639	NM_014454.2	332	Gtt/Ttt																																																																														
LATS1	0	MSKCC	GRCh37	6	149997764	149997764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	651	548	0	ENST00000253339.5:c.2703G>T	p.Gln901His	p.Q901H	ENST00000253339		901	caG/caT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0013016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			918	302	704	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38148019	38148019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			905	69	645	0	ENST00000317025.8:c.3092C>G	p.Thr1031Ser	p.T1031S	ENST00000317025	NM_023034.1	1031	aCt/aGt																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981798	70981798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013016-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1460	105	723	1	ENST00000276594.2:c.298C>T	p.Pro100Ser	p.P100S	ENST00000276594	NM_024504.3	100	Ccg/Tcg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0018298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	616	513	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
CD276	0	MSKCC	GRCh37	15	74002009	74002009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	236	650	0	ENST00000318443.5:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000318443	NM_001024736.1	509	Gag/Aag																																																																														
TSC2	0	MSKCC	GRCh37	16	2120572	2120572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	337	678	1	ENST00000219476.3:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000219476	NM_000548.3	611	cGg/cAg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993495	72993495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	97	655	1	ENST00000268489.5:c.550C>T	p.Pro184Ser	p.P184S	ENST00000268489	NM_006885.3	184	Cct/Tct																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259183	36259183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	80	543	0	ENST00000300305.3:c.308C>T	p.Pro103Leu	p.P103L	ENST00000300305		103	cCt/cTt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217181	66217181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	169	560	1	ENST00000273854.3:c.2434C>T	p.Leu812Phe	p.L812F	ENST00000273854	NM_004439.5	812	Ctt/Ttt																																																																														
PREX2	0	MSKCC	GRCh37	8	69002844	69002844	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	62	324	0	ENST00000288368.4:c.2144C>G	p.Pro715Arg	p.P715R	ENST00000288368	NM_024870.2	715	cCt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			90	274	518	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405953	157405954	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	218	406	1	ENST00000346085.5:c.2201dup	p.Ser736IlefsTer27	p.S736Ifs*27	ENST00000346085	NM_020732.3	732	ccg/ccGg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489571	56489571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	229	424	0	ENST00000267101.3:c.2036G>A	p.Arg679Gln	p.R679Q	ENST00000267101	NM_001982.3	679	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088681	27088682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	300	570	0	ENST00000324856.7:c.2296dup	p.Gln766ProfsTer51	p.Q766Pfs*51	ENST00000324856	NM_006015.4	764	tcc/tCcc																																																																														
ALK	0	MSKCC	GRCh37	2	29917782	29917782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	283	499	3	ENST00000389048.3:c.886G>A	p.Glu296Lys	p.E296K	ENST00000389048	NM_004304.4	296	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057712	27057712	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	305	606	0	ENST00000324856.7:c.1420C>T	p.Gln474Ter	p.Q474*	ENST00000324856	NM_006015.4	474	Caa/Taa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118359423	118359425	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0018986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	163	367	0	ENST00000534358.1:c.4432_4434del	p.Arg1478del	p.R1478del	ENST00000534358	NM_005933.3	1476	tGTCgt/tgt																																																																														
CYLD	0	MSKCC	GRCh37	16	50813823	50813823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	294	569	1	ENST00000398568.2:c.1377G>A	p.Met459Ile	p.M459I	ENST00000398568	NM_001042412.1	459	atG/atA																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627844	14627844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	319	535	0	ENST00000254322.2:c.226G>A	p.Gly76Ser	p.G76S	ENST00000254322	NM_006145.1	76	Ggc/Agc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591109	67591114	+	inframe_deletion	In_Frame_Del	DEL	CCAGAC	CCAGAC	-			P-0018986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			83	214	364	0	ENST00000274335.5:c.1703_1708del	p.Pro568_Asp569del	p.P568_D569del	ENST00000274335		568	CCAGAC/-																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459891	149459891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143025739		P-0018986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	309	515	0	ENST00000286301.3:c.316C>T	p.Arg106Trp	p.R106W	ENST00000286301	NM_005211.3	106	Cgg/Tgg																																																																														
PREX2	0	MSKCC	GRCh37	8	69021826	69021826	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	310	565	0	ENST00000288368.4:c.3114A>C	p.Lys1038Asn	p.K1038N	ENST00000288368	NM_024870.2	1038	aaA/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026114-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			168	296	620	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CUL3	0	MSKCC	GRCh37	2	225370813	225370813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026114-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	122	433	1	ENST00000264414.4:c.1066C>T	p.Leu356Phe	p.L356F	ENST00000264414	NM_003590.4	356	Ctc/Ttc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259401	89259401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026114-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	124	553	1	ENST00000336596.2:c.545C>T	p.Ala182Val	p.A182V	ENST00000336596	NM_005233.5	182	gCa/gTa																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9778831	9778831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026114-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	153	584	3	ENST00000377346.4:c.1100C>T	p.Ser367Leu	p.S367L	ENST00000377346	NM_005026.3	367	tCg/tTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63411030	63411030	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	66	325	0	ENST00000330258.3:c.2137G>C	p.Asp713His	p.D713H	ENST00000330258	NM_152424.3	713	Gat/Cat																																																																														
NTRK1	0	MSKCC	GRCh37	1	156844177	156844177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0031129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	278	699	0	ENST00000524377.1:c.1180T>A	p.Ser394Thr	p.S394T	ENST00000524377	NM_002529.3	394	Tcc/Acc																																																																														
DIS3	0	MSKCC	GRCh37	13	73347911	73347911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			165	27	276	0	ENST00000377767.4:c.1150C>A	p.Arg384Ser	p.R384S	ENST00000377767	NM_014953.3	384	Cgc/Agc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212576809	212576809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031129-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	52	486	0	ENST00000342788.4:c.1090G>C	p.Gly364Arg	p.G364R	ENST00000342788	NM_005235.2	364	Ggg/Cgg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	101	322	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	221	651	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857047	9857047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			250	108	315	0	ENST00000330684.3:c.4354C>T	p.Arg1452Cys	p.R1452C	ENST00000330684	NM_001134407.1	1452	Cgc/Tgc																																																																														
EGFR	0	MSKCC	GRCh37	7	55242466	55242474	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGA	GAATTAAGA	-			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	424	523	0	ENST00000275493.2:c.2239_2247delTTAAGAGAA	p.Leu747_Glu749del	p.L747_E749del	ENST00000275493	NM_005228.3	746	GAATTAAGA/-																																																																														
ATRX	0	MSKCC	GRCh37	X	76937230	76937230	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	115	610	0	ENST00000373344.5:c.3518C>A	p.Ser1173Ter	p.S1173*	ENST00000373344	NM_000489.3	1173	tCa/tAa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41219669	41219669	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	103	490	0	ENST00000357654.3:c.5030C>G	p.Thr1677Ser	p.T1677S	ENST00000357654	NM_007294.3	1677	aCt/aGt																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66519044	66519044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	177	449	0	ENST00000358598.2:c.325G>T	p.Asp109Tyr	p.D109Y	ENST00000358598	NM_212471.2	109	Gat/Tat																																																																														
KMT2B	0	MSKCC	GRCh37	19	36222925	36222925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	250	835	0	ENST00000222270.7:c.5554G>T	p.Ala1852Ser	p.A1852S	ENST00000222270	NM_014727.1	1852	Gcc/Tcc																																																																														
XPO1	0	MSKCC	GRCh37	2	61708324	61708324	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	178	367	0	ENST00000401558.2:c.3065T>A	p.Ile1022Lys	p.I1022K	ENST00000401558	NM_003400.3	1022	aTa/aAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546878	9546878	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	185	421	1	ENST00000353224.5:c.1144T>A	p.Leu382Met	p.L382M	ENST00000353224	NM_177990.2	382	Ttg/Atg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730835	40730835	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	342	694	0	ENST00000373198.4:c.3700G>C	p.Asp1234His	p.D1234H	ENST00000373198	NM_133170.3	1234	Gac/Cac																																																																														
MLH1	0	MSKCC	GRCh37	3	37035145	37035145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	66	347	0	ENST00000231790.2:c.107T>C	p.Ile36Thr	p.I36T	ENST00000231790	NM_000249.3	36	aTt/aCt																																																																														
FLT4	0	MSKCC	GRCh37	5	180048144	180048144	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	90	658	0	ENST00000261937.6:c.2129T>G	p.Val710Gly	p.V710G	ENST00000261937	NM_182925.4	710	gTg/gGg																																																																														
AMER1	0	MSKCC	GRCh37	X	63413027	63413027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	146	828	0	ENST00000330258.3:c.140C>A	p.Ser47Tyr	p.S47Y	ENST00000330258	NM_152424.3	47	tCc/tAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76937137	76937137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031319-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	96	545	0	ENST00000373344.5:c.3611C>T	p.Ser1204Phe	p.S1204F	ENST00000373344	NM_000489.3	1204	tCt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	451	530	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487621	56487621	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	182	512	0	ENST00000267101.3:c.1554G>C	p.Leu518Phe	p.L518F	ENST00000267101	NM_001982.3	518	ttG/ttC																																																																														
RB1	0	MSKCC	GRCh37	13	48934198	48934198	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	162	412	0	ENST00000267163.4:c.653T>A	p.Leu218Ter	p.L218*	ENST00000267163	NM_000321.2	218	tTa/tAa																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729096	66729096	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	82	551	0	ENST00000307102.5:c.304G>T	p.Glu102Ter	p.E102*	ENST00000307102	NM_002755.3	102	Gag/Tag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781373	3781384	+	inframe_deletion	In_Frame_Del	DEL	GCGCCCATCCAT	GCGCCCATCCAT	-			P-0031512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	54	715	0	ENST00000262367.5:c.4981_4992del	p.Met1661_Arg1664del	p.M1661_R1664del	ENST00000262367	NM_004380.2	1661	ATGGATGGGCGC/-																																																																														
BRD4	0	MSKCC	GRCh37	19	15349228	15349228	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	233	490	0	ENST00000263377.2:c.4049A>T	p.Gln1350Leu	p.Q1350L	ENST00000263377	NM_058243.2	1350	cAg/cTg																																																																														
MSH2	0	MSKCC	GRCh37	2	47707900	47707900	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	201	466	0	ENST00000233146.2:c.2524G>T	p.Glu842Ter	p.E842*	ENST00000233146	NM_000251.2	842	Gag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40979269	40979269	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0031512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	207	444	0	ENST00000373198.4:c.1864A>T	p.Ser622Cys	p.S622C	ENST00000373198	NM_133170.3	622	Agt/Tgt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499337	89499337	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	169	342	0	ENST00000336596.2:c.2507C>G	p.Ala836Gly	p.A836G	ENST00000336596	NM_005233.5	836	gCt/gGt																																																																														
TAP2	0	MSKCC	GRCh37	6	32803447	32803447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	317	717	0	ENST00000374899.4:c.712C>A	p.Leu238Ile	p.L238I	ENST00000374899	NM_018833.2	238	Ctc/Atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	29	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	79	349	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	79	349	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	29	475	0	ENST00000269305.4:c.102dupC	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	79	349	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TCT			P-0031598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	67	483	0	ENST00000269571.5:c.2326_2327insTCT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTCTgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	50	432	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NUF2	0	MSKCC	GRCh37	1	163318848	163318848	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	31	479	0	ENST00000271452.3:c.1238A>C	p.Glu413Ala	p.E413A	ENST00000271452	NM_145697.2	413	gAa/gCa																																																																														
DICER1	0	MSKCC	GRCh37	14	95597917	95597917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	37	400	0	ENST00000343455.3:c.367G>A	p.Glu123Lys	p.E123K	ENST00000343455	NM_177438.2	123	Gaa/Aaa																																																																														
TERT	0	MSKCC	GRCh37	5	1293990	1293990	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	57	853	0	ENST00000310581.5:c.1011C>A	p.Asp337Glu	p.D337E	ENST00000310581	NM_198253.2	337	gaC/gaA																																																																														
BRAF	0	MSKCC	GRCh37	7	140453153	140453153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	8	307	0	ENST00000288602.6:c.1782T>A	p.Asp594Glu	p.D594E	ENST00000288602	NM_004333.4	594	gaT/gaA																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	16	415	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0031605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	19	304	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692884	89692884	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	11	304	0	ENST00000371953.3:c.368A>T	p.His123Leu	p.H123L	ENST00000371953	NM_000314.4	123	cAc/cTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	74	162	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
ATRX	0	MSKCC	GRCh37	X	76814238	76814238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	19	253	1	ENST00000373344.5:c.6406G>A	p.Asp2136Asn	p.D2136N	ENST00000373344	NM_000489.3	2136	Gac/Aac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822615	72822615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	110	436	0	ENST00000268489.5:c.9560C>T	p.Thr3187Met	p.T3187M	ENST00000268489	NM_006885.3	3187	aCg/aTg																																																																														
GNAQ	0	MSKCC	GRCh37	9	80336289	80336289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	163	307	1	ENST00000286548.4:c.1030G>A	p.Val344Ile	p.V344I	ENST00000286548	NM_002072.3	344	Gtc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	173	508	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	163	334	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	49	314	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	43	344	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
APC	0	MSKCC	GRCh37	5	112175573	112175573	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	195	256	0	ENST00000257430.4:c.4283del	p.Gly1428AspfsTer45	p.G1428Dfs*45	ENST00000257430	NM_000038.5	1428	Gga/ga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912131	114912131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	31	389	0	ENST00000543371.1:c.1201G>A	p.Glu401Lys	p.E401K	ENST00000543371	NM_001198531.1	401	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8100496	8100496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	102	504	1	ENST00000346208.3:c.470C>T	p.Pro157Leu	p.P157L	ENST00000346208		157	cCg/cTg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532438	63532438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	140	461	0	ENST00000307078.5:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000307078	NM_004655.3	714	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0031700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	20	403	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44950111	44950111	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0031700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	21	400	0	ENST00000377967.4:c.3878+2T>G		p.X1293_splice	ENST00000377967	NM_021140.2	1293																																																																															
DIS3	0	MSKCC	GRCh37	13	73337717	73337717	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	117	233	0	ENST00000377767.4:c.1999A>T	p.Met667Leu	p.M667L	ENST00000377767	NM_014953.3	667	Atg/Ttg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453179	140453179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	176	352	0	ENST00000288602.6:c.1756G>A	p.Glu586Lys	p.E586K	ENST00000288602	NM_004333.4	586	Gaa/Aaa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222425	2222425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	248	557	0	ENST00000398665.3:c.3257G>A	p.Arg1086His	p.R1086H	ENST00000398665	NM_032482.2	1086	cGc/cAc																																																																														
NF1	0	MSKCC	GRCh37	17	29541528	29541528	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	188	410	0	ENST00000358273.4:c.1453del	p.Glu485ArgfsTer13	p.E485Rfs*13	ENST00000358273	NM_001042492.2	484	ctG/ct																																																																														
NF1	0	MSKCC	GRCh37	17	29554253	29554253	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	181	408	0	ENST00000358273.4:c.2269A>T	p.Lys757Ter	p.K757*	ENST00000358273	NM_001042492.2	757	Aaa/Taa																																																																														
FAT1	0	MSKCC	GRCh37	4	187532843	187532843	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	245	571	0	ENST00000441802.2:c.9550G>C	p.Glu3184Gln	p.E3184Q	ENST00000441802	NM_005245.3	3184	Gaa/Caa																																																																														
FLT4	0	MSKCC	GRCh37	5	180056417	180056417	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	123	446	0	ENST00000261937.6:c.827del	p.Gly276ValfsTer20	p.G276Vfs*20	ENST00000261937	NM_182925.4	276	gGt/gt																																																																														
AR	0	MSKCC	GRCh37	X	66765101	66765101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	251	565	0	ENST00000374690.3:c.113G>A	p.Gly38Asp	p.G38D	ENST00000374690	NM_000044.3	38	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	41	625	1	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	90	660	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578262	7578318	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGC	CGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGC	-			P-0031720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	140	854	0	ENST00000269305.4:c.560-29_587del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
BAP1	0	MSKCC	GRCh37	3	52441430	52441430	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	202	729	0	ENST00000460680.1:c.422A>C	p.His141Pro	p.H141P	ENST00000460680	NM_004656.3	141	cAt/cCt																																																																														
ATR	0	MSKCC	GRCh37	3	142281475	142281476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	93	903	0	ENST00000350721.4:c.768dup	p.Gln257SerfsTer11	p.Q257Sfs*11	ENST00000350721	NM_001184.3	256	-/T																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18719930	18719930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	192	655	0	ENST00000266497.5:c.3827G>A	p.Arg1276Lys	p.R1276K	ENST00000266497		1276	aGa/aAa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5219447	5219447	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	84	734	0	ENST00000357368.4:c.3797T>G	p.Phe1266Cys	p.F1266C	ENST00000357368	NM_002850.3	1266	tTc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	29	447	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106078	27106078	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	144	548	0	ENST00000324856.7:c.5693delC	p.Pro1898HisfsTer25	p.P1898Hfs*25	ENST00000324856	NM_006015.4	1897	Ccc/cc																																																																														
STK11	0	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0031725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	202	444	0	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
ATM	0	MSKCC	GRCh37	11	108186589	108186589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	21	363	1	ENST00000278616.4:c.6046G>T	p.Asp2016Tyr	p.D2016Y	ENST00000278616	NM_000051.3	2016	Gat/Tat																																																																														
ATM	0	MSKCC	GRCh37	11	108206659	108206659	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	35	437	1	ENST00000278616.4:c.8239A>T	p.Lys2747Ter	p.K2747*	ENST00000278616	NM_000051.3	2747	Aag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730919	40730919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	67	512	0	ENST00000373198.4:c.3616C>T	p.Pro1206Ser	p.P1206S	ENST00000373198	NM_133170.3	1206	Ccc/Tcc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156516	55156516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	81	549	0	ENST00000257290.5:c.2917G>T	p.Asp973Tyr	p.D973Y	ENST00000257290	NM_006206.4	973	Gac/Tac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	213	814	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	62	982	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18466950	18466950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	32	468	0	ENST00000266497.5:c.1089G>C	p.Gln363His	p.Q363H	ENST00000266497		363	caG/caC																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792835	33792835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	13	226	0	ENST00000498907.2:c.486G>T	p.Gln162His	p.Q162H	ENST00000498907	NM_004364.3	162	caG/caT																																																																														
ERCC2	0	MSKCC	GRCh37	19	45855583	45855583	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	55	797	0	ENST00000391945.4:c.2074A>T	p.Lys692Ter	p.K692*	ENST00000391945	NM_000400.3	692	Aag/Tag																																																																														
KIT	0	MSKCC	GRCh37	4	55524225	55524225	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	70	659	0	ENST00000288135.5:c.44T>A	p.Leu15His	p.L15H	ENST00000288135	NM_000222.2	15	cTc/cAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55225394	55225394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	217	707	0	ENST00000275493.2:c.1246G>A	p.Asp416Asn	p.D416N	ENST00000275493	NM_005228.3	416	Gac/Aac																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	57	596	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
MET	0	MSKCC	GRCh37	7	116417463	116417463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	11	494	0	ENST00000397752.3:c.3280C>T	p.His1094Tyr	p.H1094Y	ENST00000397752	NM_000245.2	1094	Cat/Tat																																																																														
CCND2	0	MSKCC	GRCh37	12	4388020	4388020	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	89	567	0	ENST00000261254.3:c.506A>T	p.Gln169Leu	p.Q169L	ENST00000261254	NM_001759.3	169	cAg/cTg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78897399	78897399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	85	733	1	ENST00000306801.3:c.2734G>T	p.Ala912Ser	p.A912S	ENST00000306801	NM_020761.2	912	Gct/Tct																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0020383-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			121	11	86	0	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020383-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			236	186	425	0	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0020383-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			398	216	460	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020383-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			102	216	389	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112173835	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AGAT	AGAT	-			P-0020383-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			85	179	418	0	ENST00000257430.4:c.2547_2550delTAGA	p.Asp849GlufsTer11	p.D849Efs*11	ENST00000257430	NM_000038.5	848	aaAGAT/aa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114711272	114711273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020383-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			293	173	289	0	ENST00000543371.1:c.291dup	p.Pro98AlafsTer47	p.P98Afs*47	ENST00000543371	NM_001198531.1	96	aag/aaGg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0026115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	34	155	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
JAK3	0	MSKCC	GRCh37	19	17947979	17947979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	70	437	0	ENST00000458235.1:c.1745G>A	p.Arg582Gln	p.R582Q	ENST00000458235	NM_000215.3	582	cGg/cAg																																																																														
RASA1	0	MSKCC	GRCh37	5	86628412	86628412	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	16	137	0	ENST00000274376.6:c.781T>A	p.Cys261Ser	p.C261S	ENST00000274376	NM_002890.2	261	Tgt/Agt																																																																														
RBM10	0	MSKCC	GRCh37	X	47040989	47040989	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	109	194	0	ENST00000329236.7:c.1285del	p.Ile429SerfsTer197	p.I429Sfs*197	ENST00000329236	NM_001204466.1	429	Atc/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	111	274	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	165	406	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88690576	88690576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	80	284	0	ENST00000360948.2:c.454C>A	p.Leu152Ile	p.L152I	ENST00000360948	NM_001012338.2	152	Ctt/Att																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7983164	7983164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	114	303	0	ENST00000319144.4:c.850C>G	p.Pro284Ala	p.P284A	ENST00000319144	NM_001139.2	284	Cca/Gca																																																																														
NF1	0	MSKCC	GRCh37	17	29528456	29528456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	23	256	0	ENST00000358273.4:c.1213A>G	p.Thr405Ala	p.T405A	ENST00000358273	NM_001042492.2	405	Aca/Gca																																																																														
MALT1	0	MSKCC	GRCh37	18	56348415	56348415	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	31	118	0	ENST00000348428.3:c.223G>T	p.Glu75Ter	p.E75*	ENST00000348428	NM_006785.3	75	Gag/Tag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213513	36213513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	115	470	0	ENST00000222270.7:c.2615G>T	p.Cys872Phe	p.C872F	ENST00000222270	NM_014727.1	872	tGc/tTc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46279758	46279758	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	206	282	0	ENST00000371998.3:c.3684A>T	p.Gln1228His	p.Q1228H	ENST00000371998		1228	caA/caT																																																																														
FYN	0	MSKCC	GRCh37	6	111983112	111983112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	27	215	0	ENST00000368678.4:c.1435G>T	p.Gly479Cys	p.G479C	ENST00000368678		479	Ggc/Tgc																																																																														
ARAF	0	MSKCC	GRCh37	X	47426520	47426521	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0026120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	48	335	0	ENST00000377045.4:c.863_864delinsTA	p.Lys288Ile	p.K288I	ENST00000377045	NM_001654.4	288	aAG/aTA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	215	285	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	399	409	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
AMER1	0	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	376	210	1	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
RARA	0	MSKCC	GRCh37	17	38508234	38508234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	140	273	0	ENST00000254066.5:c.542C>T	p.Thr181Met	p.T181M	ENST00000254066	NM_000964.3	181	aCg/aTg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982087	93982087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	120	227	2	ENST00000369303.4:c.1378G>A	p.Glu460Lys	p.E460K	ENST00000369303	NM_004440.3	460	Gag/Aag																																																																														
SOX9	0	MSKCC	GRCh37	17	70119762	70119763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	364	352	3	ENST00000245479.2:c.767_768dupGG	p.Arg257GlyfsTer23	p.R257Gfs*23	ENST00000245479	NM_000346.3	255	gag/gaGGg																																																																														
APC	0	MSKCC	GRCh37	5	112174411	112174411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	127	138	0	ENST00000257430.4:c.3120G>T	p.Arg1040Ser	p.R1040S	ENST00000257430	NM_000038.5	1040	agG/agT																																																																														
APC	0	MSKCC	GRCh37	5	112174551	112174551	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	192	260	1	ENST00000257430.4:c.3260del	p.Leu1087ProfsTer39	p.L1087Pfs*39	ENST00000257430	NM_000038.5	1087	cTc/cc																																																																														
APC	0	MSKCC	GRCh37	5	112175980	112175981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	64	147	1	ENST00000257430.4:c.4691dupT	p.Leu1564PhefsTer3	p.L1564Ffs*3	ENST00000257430	NM_000038.5	1563	-/T																																																																														
INHBA	0	MSKCC	GRCh37	7	41739803	41739803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	135	266	0	ENST00000242208.4:c.170C>G	p.Ala57Gly	p.A57G	ENST00000242208	NM_002192.2	57	gCc/gGc																																																																														
BCOR	0	MSKCC	GRCh37	X	39930216	39930234	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTTACTTACATCTCTCAC	GTTTACTTACATCTCTCAC	-			P-0026124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	189	101	2	ENST00000378444.4:c.3230_3238+10del		p.X1077_splice	ENST00000378444	NM_001123385.1	1077																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	223	232	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	436	467	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
RB1	0	MSKCC	GRCh37	13	48878115	48878117	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			159	10	42	0	ENST00000267163.4:c.78_80del	p.Pro29del	p.P29del	ENST00000267163	NM_000321.2	23	CCG/-																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	102	386	0	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245411	153245411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	230	475	0	ENST00000281708.4:c.1780C>T	p.Leu594Phe	p.L594F	ENST00000281708	NM_033632.3	594	Ctt/Ttt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243979	41243979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	409	495	0	ENST00000357654.3:c.3569C>T	p.Pro1190Leu	p.P1190L	ENST00000357654	NM_007294.3	1190	cCt/cTt																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910350	29910350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1607	108	645	1	ENST00000376809.5:c.20G>A	p.Arg7Gln	p.R7Q	ENST00000376809	NM_002116.7	7	cGa/cAa																																																																														
MITF	0	MSKCC	GRCh37	3	70014170	70014170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			995	172	474	2	ENST00000352241.4:c.1334C>T	p.Thr445Met	p.T445M	ENST00000352241	NM_198159.2	445	aCg/aTg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50444317	50444317	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	257	316	1	ENST00000331340.3:c.247C>T	p.Arg83Ter	p.R83*	ENST00000331340	NM_006060.4	83	Cga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435049	49435050	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	233	458	1	ENST00000301067.7:c.6503_6504delinsTT	p.Pro2168Leu	p.P2168L	ENST00000301067	NM_003482.3	2168	cCC/cTT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445809	49445809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			808	224	712	1	ENST00000301067.7:c.1657C>T	p.Pro553Ser	p.P553S	ENST00000301067	NM_003482.3	553	Cct/Tct																																																																														
SETD8	0	MSKCC	GRCh37	12	123880969	123880970	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	174	277	0	ENST00000330479.4:c.587_588delinsTT	p.Ala196Val	p.A196V	ENST00000330479	NM_020382.3	196	gCC/gTT																																																																														
FLT1	0	MSKCC	GRCh37	13	28971138	28971138	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	255	319	0	ENST00000282397.4:c.1619A>G	p.Lys540Arg	p.K540R	ENST00000282397	NM_002019.4	540	aAa/aGa																																																																														
EZH1	0	MSKCC	GRCh37	17	40874903	40874903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			702	241	516	0	ENST00000428826.2:c.397C>T	p.Pro133Ser	p.P133S	ENST00000428826		133	Ccc/Tcc																																																																														
MYCN	0	MSKCC	GRCh37	2	16086124	16086124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	411	465	0	ENST00000281043.3:c.1300C>T	p.Gln434Ter	p.Q434*	ENST00000281043	NM_005378.4	434	Cag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	41400169	41400169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	259	407	0	ENST00000373198.4:c.590G>A	p.Arg197Gln	p.R197Q	ENST00000373198	NM_133170.3	197	cGa/cAa																																																																														
KDR	0	MSKCC	GRCh37	4	55972936	55972936	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	167	478	0	ENST00000263923.4:c.1454G>A	p.Trp485Ter	p.W485*	ENST00000263923	NM_002253.2	485	tGg/tAg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32183092	32183092	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1438	328	563	0	ENST00000375023.3:c.1932A>T	p.Lys644Asn	p.K644N	ENST00000375023	NM_004557.3	644	aaA/aaT																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981789	70981789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	147	564	0	ENST00000276594.2:c.307C>T	p.Pro103Ser	p.P103S	ENST00000276594	NM_024504.3	103	Cca/Tca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636815	8636815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026326-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	382	398	0	ENST00000356435.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000356435		32	Gat/Aat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	74	486	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PARK2	0	MSKCC	GRCh37	6	161781146	161781146	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs531247345		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	128	602	0	ENST00000366898.1:c.1259G>A	p.Arg420His	p.R420H	ENST00000366898	NM_004562.2	420	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	47	507	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	93	834	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	47	505	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120013	70120013	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	32	137	0	ENST00000245479.2:c.1015C>T	p.Gln339Ter	p.Q339*	ENST00000245479	NM_000346.3	339	Cag/Tag																																																																														
DNMT1	0	MSKCC	GRCh37	19	10247947	10247947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	59	533	0	ENST00000340748.4:c.4255G>A	p.Ala1419Thr	p.A1419T	ENST00000340748		1419	Gca/Aca																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372092	55372093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	99	433	0	ENST00000297316.4:c.788dup	p.Glu264GlyfsTer101	p.E264Gfs*101	ENST00000297316	NM_022454.3	261	ggc/ggCc																																																																														
POLE	0	MSKCC	GRCh37	12	133237692	133237692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	146	624	2	ENST00000320574.5:c.2923C>T	p.Arg975Cys	p.R975C	ENST00000320574	NM_006231.2	975	Cgc/Tgc																																																																														
SDHA	0	MSKCC	GRCh37	5	235390	235390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	147	622	0	ENST00000264932.6:c.1196C>T	p.Pro399Leu	p.P399L	ENST00000264932	NM_004168.2	399	cCg/cTg																																																																														
TAP1	0	MSKCC	GRCh37	6	32814930	32814930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	73	719	1	ENST00000354258.4:c.2135C>T	p.Ala712Val	p.A712V	ENST00000354258	NM_000593.5	712	gCg/gTg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713727	30713727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	99	452	0	ENST00000359013.4:c.1127G>A	p.Gly376Asp	p.G376D	ENST00000359013	NM_001024847.2	376	gGc/gAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427983	49427983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	132	663	0	ENST00000301067.7:c.10607G>A	p.Arg3536His	p.R3536H	ENST00000301067	NM_003482.3	3536	cGc/cAc																																																																														
PREX2	0	MSKCC	GRCh37	8	68972955	68972955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141759315		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	121	521	1	ENST00000288368.4:c.1280G>A	p.Arg427Lys	p.R427K	ENST00000288368	NM_024870.2	427	aGg/aAg																																																																														
FLT4	0	MSKCC	GRCh37	5	180045854	180045854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	142	616	0	ENST00000261937.6:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000261937	NM_182925.4	973	Cgg/Tgg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31515612	31515613	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	42	490	0	ENST00000344624.3:c.1006dup	p.Glu336GlyfsTer4	p.E336Gfs*4	ENST00000344624		336	gag/gGag																																																																														
ARAF	0	MSKCC	GRCh37	X	47426444	47426444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	174	398	0	ENST00000377045.4:c.787G>A	p.Val263Met	p.V263M	ENST00000377045	NM_001654.4	263	Gtg/Atg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216188	36216188	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	154	672	0	ENST00000222270.7:c.3596G>C	p.Gly1199Ala	p.G1199A	ENST00000222270	NM_014727.1	1199	gGc/gCc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023715	27023716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	81	392	0	ENST00000324856.7:c.827dup	p.Gly277ArgfsTer123	p.G277Rfs*123	ENST00000324856	NM_006015.4	274	atg/atGg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120466284	120466284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	80	455	0	ENST00000256646.2:c.4835G>A	p.Gly1612Asp	p.G1612D	ENST00000256646	NM_024408.3	1612	gGt/gAt																																																																														
FH	0	MSKCC	GRCh37	1	241667470	241667470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	50	341	0	ENST00000366560.3:c.980C>A	p.Ala327Asp	p.A327D	ENST00000366560	NM_000143.3	327	gCc/gAc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948713	71948713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	146	713	0	ENST00000298229.2:c.3425G>A	p.Arg1142His	p.R1142H	ENST00000298229	NM_001567.3	1142	cGc/cAc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204804	94204804	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	32	518	0	ENST00000323929.3:c.781T>G	p.Phe261Val	p.F261V	ENST00000323929	NM_005591.3	261	Ttt/Gtt																																																																														
SDHD	0	MSKCC	GRCh37	11	111959690	111959690	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200255724		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	89	355	2	ENST00000375549.3:c.269C>T	p.Ala90Val	p.A90V	ENST00000375549	NM_003002.3	90	gCg/gTg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18641538	18641538	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	45	447	0	ENST00000266497.5:c.2537A>C	p.Lys846Thr	p.K846T	ENST00000266497		846	aAg/aCg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121437409	121437409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	166	703	1	ENST00000257555.6:c.1747C>T	p.Arg583Trp	p.R583W	ENST00000257555		583	Cgg/Tgg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781225	3781225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	196	827	0	ENST00000262367.5:c.5140G>A	p.Val1714Met	p.V1714M	ENST00000262367	NM_004380.2	1714	Gtg/Atg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943819	9943819	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	89	382	0	ENST00000330684.3:c.1123-1G>A		p.X375_splice	ENST00000330684	NM_001134407.1	375																																																																															
ZFHX3	0	MSKCC	GRCh37	16	72984594	72984594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	200	703	2	ENST00000268489.5:c.2990C>T	p.Ala997Val	p.A997V	ENST00000268489	NM_006885.3	997	gCc/gTc																																																																														
STAT5A	0	MSKCC	GRCh37	17	40456448	40456448	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	58	778	1	ENST00000345506.4:c.1257+1G>A		p.X419_splice	ENST00000345506	NM_003152.3	419																																																																															
MSI2	0	MSKCC	GRCh37	17	55693419	55693419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	145	673	1	ENST00000284073.2:c.626C>T	p.Ala209Val	p.A209V	ENST00000284073	NM_138962.2	209	gCg/gTg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581303	48581303	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs199809905		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	136	516	0	ENST00000342988.3:c.607C>A	p.Pro203Thr	p.P203T	ENST00000342988	NM_005359.5	203	Cca/Aca																																																																														
DOT1L	0	MSKCC	GRCh37	19	2217051	2217051	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	170	756	0	ENST00000398665.3:c.2509del	p.Ala837ProfsTer14	p.A837Pfs*14	ENST00000398665	NM_032482.2	836	Ggg/gg																																																																														
JAK3	0	MSKCC	GRCh37	19	17953881	17953881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	86	739	1	ENST00000458235.1:c.521C>T	p.Ala174Val	p.A174V	ENST00000458235	NM_000215.3	174	gCg/gTg																																																																														
UPF1	0	MSKCC	GRCh37	19	18965946	18965946	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	145	700	0	ENST00000262803.5:c.1439A>C	p.Lys480Thr	p.K480T	ENST00000262803	NM_002911.3	480	aAg/aCg																																																																														
MEF2B	0	MSKCC	GRCh37	19	19256638	19256638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	73	600	1	ENST00000162023.5:c.1075C>T	p.Arg359Trp	p.R359W	ENST00000162023		359	Cgg/Tgg																																																																														
ERF	0	MSKCC	GRCh37	19	42753594	42753594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	172	791	0	ENST00000222329.4:c.670C>T	p.Arg224Cys	p.R224C	ENST00000222329	NM_006494.2	224	Cgc/Tgc																																																																														
MSH6	0	MSKCC	GRCh37	2	48025775	48025776	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	32	260	0	ENST00000234420.5:c.655_656del	p.Ser219Ter	p.S219*	ENST00000234420	NM_000179.2	218	aAG/a																																																																														
MAPK1	0	MSKCC	GRCh37	22	22153344	22153344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	75	473	0	ENST00000215832.6:c.566C>T	p.Ala189Val	p.A189V	ENST00000215832	NM_002745.4	189	gCc/gTc																																																																														
RAF1	0	MSKCC	GRCh37	3	12653516	12653516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	142	592	0	ENST00000251849.4:c.253G>T	p.Ala85Ser	p.A85S	ENST00000251849	NM_002880.3	85	Gca/Tca																																																																														
BAP1	0	MSKCC	GRCh37	3	52441235	52441235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	101	522	0	ENST00000460680.1:c.535C>T	p.Arg179Trp	p.R179W	ENST00000460680	NM_004656.3	179	Cgg/Tgg																																																																														
ATR	0	MSKCC	GRCh37	3	142268325	142268325	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	14	352	0	ENST00000350721.4:c.3167T>C	p.Leu1056Pro	p.L1056P	ENST00000350721	NM_001184.3	1056	cTg/cCg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917494	178917494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	29	339	0	ENST00000263967.3:c.369G>A	p.Met123Ile	p.M123I	ENST00000263967	NM_006218.2	123	atG/atA																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361127	66361127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	43	368	0	ENST00000273854.3:c.1045C>T	p.Pro349Ser	p.P349S	ENST00000273854	NM_004439.5	349	Cca/Tca																																																																														
FAT1	0	MSKCC	GRCh37	4	187542567	187542567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	76	573	0	ENST00000441802.2:c.5173C>A	p.Leu1725Met	p.L1725M	ENST00000441802	NM_005245.3	1725	Ctg/Atg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38968099	38968099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	45	500	0	ENST00000357387.3:c.1006C>T	p.Arg336Cys	p.R336C	ENST00000357387	NM_152756.3	336	Cgt/Tgt																																																																														
MDC1	0	MSKCC	GRCh37	6	30671772	30671772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	81	695	0	ENST00000376406.3:c.5188C>A	p.Pro1730Thr	p.P1730T	ENST00000376406	NM_014641.2	1730	Cct/Act																																																																														
STK19	0	MSKCC	GRCh37	6	31948260	31948260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	333	710	0	ENST00000375331.2:c.836G>A	p.Arg279Gln	p.R279Q	ENST00000375331	NM_004197.1	279	cGa/cAa																																																																														
TAP1	0	MSKCC	GRCh37	6	32815347	32815347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	341	775	2	ENST00000354258.4:c.2026G>A	p.Ala676Thr	p.A676T	ENST00000354258	NM_000593.5	676	Gca/Aca																																																																														
PRDM1	0	MSKCC	GRCh37	6	106554937	106554937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	137	526	0	ENST00000369096.4:c.2054G>A	p.Arg685Gln	p.R685Q	ENST00000369096	NM_001198.3	685	cGg/cAg																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138196092	138196092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200740561		P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	186	366	0	ENST00000237289.4:c.406C>T	p.Arg136Cys	p.R136C	ENST00000237289	NM_001270507.1	136	Cgc/Tgc																																																																														
ESR1	0	MSKCC	GRCh37	6	152129240	152129240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	88	733	1	ENST00000206249.3:c.193G>A	p.Ala65Thr	p.A65T	ENST00000206249	NM_000125.3	65	Gcg/Acg																																																																														
AGO2	0	MSKCC	GRCh37	8	141557661	141557661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	195	844	0	ENST00000220592.5:c.1654G>A	p.Val552Met	p.V552M	ENST00000220592	NM_012154.3	552	Gtg/Atg																																																																														
ABL1	0	MSKCC	GRCh37	9	133748291	133748291	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	123	610	0	ENST00000318560.5:c.952A>G	p.Met318Val	p.M318V	ENST00000318560	NM_005157.4	318	Atg/Gtg																																																																														
ABL1	0	MSKCC	GRCh37	9	133756021	133756021	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	145	557	0	ENST00000318560.5:c.1648A>G	p.Met550Val	p.M550V	ENST00000318560	NM_005157.4	550	Atg/Gtg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139403498	139403498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	184	769	1	ENST00000277541.6:c.2995G>A	p.Val999Met	p.V999M	ENST00000277541	NM_017617.3	999	Gtg/Atg																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841081	15841081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	80	356	0	ENST00000307771.7:c.1165T>C	p.Tyr389His	p.Y389H	ENST00000307771	NM_005089.3	389	Tac/Cac																																																																														
APC	0	MSKCC	GRCh37	5	112175570	112175571	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	G			P-0028274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	83	398	0	ENST00000257430.4:c.4279_4280delinsG	p.Pro1427ValfsTer46	p.P1427Vfs*46	ENST00000257430	NM_000038.5	1427	CCt/Gt																																																																														
NF1	0	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	31	533	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0028529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	38	593	0	ENST00000269305.4:c.97-2A>G		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
CDKN2A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0030990-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			109	12	86	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0030990-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			109	12	86	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
ERCC5	0	MSKCC	GRCh37	13	103504570	103504570	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030990-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			463	59	378	0	ENST00000355739.4:c.191A>T	p.Lys64Ile	p.K64I	ENST00000355739	NM_000123.3	64	aAa/aTa																																																																														
KIT	0	MSKCC	GRCh37	4	55593602	55593610	+	inframe_deletion	In_Frame_Del	DEL	GTGGAAGGT	GTGGAAGGT	-			P-0031004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	202	493	0	ENST00000288135.5:c.1668_1676del	p.Gln556_Val559delinsHis	p.Q556_V559delinsH	ENST00000288135	NM_000222.2	556	caGTGGAAGGTt/cat																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031293-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	41	292	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031293-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	41	292	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031293-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	41	292	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031293-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	82	372	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602863	10602863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031293-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			768	135	535	1	ENST00000171111.5:c.715G>A	p.Val239Met	p.V239M	ENST00000171111	NM_203500.1	239	Gtg/Atg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911062	29911063	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031293-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			693	39	482	0	ENST00000376809.5:c.362dup	p.Met122AsnfsTer55	p.M122Nfs*55	ENST00000376809	NM_002116.7	121	ata/aTta																																																																														
STK11	0	MSKCC	GRCh37	19	1220694	1220694	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	238	590	0	ENST00000326873.7:c.712A>T	p.Ile238Phe	p.I238F	ENST00000326873	NM_000455.4	238	Atc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7573943	7573943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	290	631	0	ENST00000269305.4:c.1084A>G	p.Ser362Gly	p.S362G	ENST00000269305	NM_001126112.2	362	Agc/Ggc																																																																														
RET	0	MSKCC	GRCh37	10	43601964	43601964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	314	730	0	ENST00000355710.3:c.1008C>A	p.Asn336Lys	p.N336K	ENST00000355710	NM_020975.4	336	aaC/aaA																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913120	32913131	+	inframe_deletion	In_Frame_Del	DEL	AAAACCTTTTTG	AAAACCTTTTTG	-			P-0031331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	274	646	0	ENST00000380152.3:c.4629_4640del	p.Lys1543_Asp1547delinsAsn	p.K1543_D1547delinsN	ENST00000380152		1543	aAAAACCTTTTTGat/aat																																																																														
MGA	0	MSKCC	GRCh37	15	42058693	42058693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	81	369	0	ENST00000219905.7:c.8413G>T	p.Asp2805Tyr	p.D2805Y	ENST00000219905	NM_001164273.1	2805	Gat/Tat																																																																														
NF1	0	MSKCC	GRCh37	17	29664439	29664439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	247	551	0	ENST00000358273.4:c.6484del	p.Tyr2162ThrfsTer38	p.Y2162Tfs*38	ENST00000358273	NM_001042492.2	2161	Ttt/tt																																																																														
NF1	0	MSKCC	GRCh37	17	29664876	29664876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	107	443	0	ENST00000358273.4:c.6682C>T	p.Gln2228Ter	p.Q2228*	ENST00000358273	NM_001042492.2	2228	Cag/Tag																																																																														
SMAD2	0	MSKCC	GRCh37	18	45377675	45377675	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	83	368	0	ENST00000262160.6:c.754A>G	p.Thr252Ala	p.T252A	ENST00000262160	NM_005901.5	252	Act/Gct																																																																														
DOT1L	0	MSKCC	GRCh37	19	2213595	2213595	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	327	754	0	ENST00000398665.3:c.1615C>T	p.Gln539Ter	p.Q539*	ENST00000398665	NM_032482.2	539	Cag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600363	10600363	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	314	728	0	ENST00000171111.5:c.1492C>T	p.Arg498Ter	p.R498*	ENST00000171111	NM_203500.1	498	Cga/Tga																																																																														
EPAS1	0	MSKCC	GRCh37	2	46609164	46609178	+	inframe_deletion	In_Frame_Del	DEL	GAACCTCAGGGGTGG	GAACCTCAGGGGTGG	-			P-0031331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	45	732	0	ENST00000263734.3:c.2225_2239del	p.Asn742_Gly746del	p.N742_G746del	ENST00000263734	NM_001430.4	741	aaGAACCTCAGGGGTGGg/aag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8504374	8504375	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATG			P-0031331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	45	573	0	ENST00000356435.5:c.1706_1708dup	p.Ser569dup	p.S569dup	ENST00000356435		569	tat/tCATat																																																																														
BCOR	0	MSKCC	GRCh37	X	39937166	39937166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	160	617	0	ENST00000378444.4:c.17C>T	p.Pro6Leu	p.P6L	ENST00000378444	NM_001123385.1	6	cCc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	94	611	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
STK11	0	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	91	575	1	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62297356	62297356	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0031337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	51	451	0	ENST00000508582.2:c.611-1G>C		p.X204_splice	ENST00000508582		204																																																																															
EED	0	MSKCC	GRCh37	11	85975306	85975306	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0031337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	10	345	0	ENST00000263360.6:c.726+1G>C		p.X242_splice	ENST00000263360	NM_003797.3	242																																																																															
NKX2-1	0	MSKCC	GRCh37	14	36986689	36986690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	20	13	0	ENST00000354822.5:c.999_1000insT	p.Ile334TyrfsTer105	p.I334Yfs*105	ENST00000354822	NM_001079668.2	333	-/T																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0031340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	77	505	1	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	213	744	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0031342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	24	234	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
PTEN	0	MSKCC	GRCh37	10	89720876	89720876	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0031342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	53	363	0	ENST00000371953.3:c.1026+1G>T		p.X342_splice	ENST00000371953	NM_000314.4	342																																																																															
CREBBP	0	MSKCC	GRCh37	16	3807296	3807296	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	109	488	0	ENST00000262367.5:c.3691C>T	p.Gln1231Ter	p.Q1231*	ENST00000262367	NM_004380.2	1231	Cag/Tag																																																																														
SOX17	0	MSKCC	GRCh37	8	55371849	55371850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	21	81	0	ENST00000297316.4:c.541dup	p.Leu181ProfsTer184	p.L181Pfs*184	ENST00000297316	NM_022454.3	180	ggc/ggCc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	266	621	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577056	7577056	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	986	748	0	ENST00000269305.4:c.882del	p.Glu294AspfsTer51	p.E294Dfs*51	ENST00000269305	NM_001126112.2	294	gaG/ga																																																																														
TEK	0	MSKCC	GRCh37	9	27204919	27204919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	62	366	0	ENST00000380036.4:c.2220C>A	p.Asp740Glu	p.D740E	ENST00000380036	NM_000459.3	740	gaC/gaA																																																																														
KDM6A	0	MSKCC	GRCh37	X	44918318	44918318	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	141	249	0	ENST00000377967.4:c.943G>T	p.Glu315Ter	p.E315*	ENST00000377967	NM_021140.2	315	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0031552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	196	504	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
SMYD3	0	MSKCC	GRCh37	1	246490592	246490592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			676	260	543	0	ENST00000388985.4:c.442G>T	p.Val148Leu	p.V148L	ENST00000388985		148	Gta/Tta																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350354	89350354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			865	309	662	0	ENST00000301030.4:c.2596A>G	p.Arg866Gly	p.R866G	ENST00000301030	NM_001256183.1	866	Agg/Ggg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37872064	37872064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			833	264	637	1	ENST00000269571.5:c.1385G>T	p.Gly462Val	p.G462V	ENST00000269571		462	gGc/gTc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2223436	2223436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	192	455	0	ENST00000398665.3:c.3547C>T	p.Leu1183Phe	p.L1183F	ENST00000398665	NM_032482.2	1183	Ctc/Ttc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212568895	212568895	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031552-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	138	523	0	ENST00000342788.4:c.1223C>G	p.Pro408Arg	p.P408R	ENST00000342788	NM_005235.2	408	cCa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	221	481	0				ENST00000310581	NM_198253.2																																																																																
TAP2	0	MSKCC	GRCh37	6	32805404	32805404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	412	745	0	ENST00000374899.4:c.518C>G	p.Ser173Cys	p.S173C	ENST00000374899	NM_018833.2	173	tCt/tGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	248	577	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0031555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	175	546	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0031555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	331	595	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	11	376	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652009	36652010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	119	709	0	ENST00000244741.5:c.133dupG	p.Ala45GlyfsTer3	p.A45Gfs*3	ENST00000244741	NM_000389.4	44	gag/gaGg																																																																														
TSC1	0	MSKCC	GRCh37	9	135797306	135797313	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAGTGC	AAGAGTGC	-			P-0031555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	40	430	0	ENST00000298552.3:c.556_563del	p.Ala186SerfsTer29	p.A186Sfs*29	ENST00000298552	NM_001162426.1	186	GCACTCTTt/t																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949085	44949085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	273	269	0	ENST00000377967.4:c.3646G>C	p.Asp1216His	p.D1216H	ENST00000377967	NM_021140.2	1216	Gat/Cat																																																																														
RBM10	0	MSKCC	GRCh37	X	47044886	47044887	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	325	381	0	ENST00000329236.7:c.1978_1979del	p.Ser660Ter	p.S660*	ENST00000329236	NM_001204466.1	660	AGt/t																																																																														
ERBB4	0	MSKCC	GRCh37	2	212288967	212288967	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	201	613	0	ENST00000342788.4:c.2779C>T	p.Arg927Ter	p.R927*	ENST00000342788	NM_005235.2	927	Cga/Tga																																																																														
MTOR	0	MSKCC	GRCh37	1	11177077	11177077	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	193	627	0	ENST00000361445.4:c.7000T>G	p.Leu2334Val	p.L2334V	ENST00000361445	NM_004958.3	2334	Tta/Gta																																																																														
MGA	0	MSKCC	GRCh37	15	42026718	42026718	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	36	570	1	ENST00000219905.7:c.3844-2A>G		p.X1282_splice	ENST00000219905	NM_001164273.1	1282																																																																															
DAXX	0	MSKCC	GRCh37	6	33287175	33287175	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0031556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	33	517	0	ENST00000374542.5:c.1922C>G	p.Ser641Ter	p.S641*	ENST00000374542	NM_001141970.1	641	tCa/tGa																																																																														
DAXX	0	MSKCC	GRCh37	6	33288563	33288563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	226	518	0	ENST00000374542.5:c.989T>C	p.Leu330Pro	p.L330P	ENST00000374542	NM_001141970.1	330	cTc/cCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	132	577	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0031558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	14	101	1	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																																																														
RBM10	0	MSKCC	GRCh37	X	47038831	47038831	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	95	746	0	ENST00000329236.7:c.607G>T	p.Gly203Ter	p.G203*	ENST00000329236	NM_001204466.1	203	Gga/Tga																																																																														
CSF1R	0	MSKCC	GRCh37	5	149460581	149460581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	85	668	0	ENST00000286301.3:c.56G>T	p.Gly19Val	p.G19V	ENST00000286301	NM_005211.3	19	gGa/gTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874674	151874674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	70	516	0	ENST00000262189.6:c.7864C>T	p.His2622Tyr	p.H2622Y	ENST00000262189	NM_170606.2	2622	Cac/Tac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8449731	8449731	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	70	594	0	ENST00000356435.5:c.3982del	p.Thr1328HisfsTer22	p.T1328Hfs*22	ENST00000356435		1328	Aca/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	286	683	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	361	804	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	207	508	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670598	134670598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	241	918	1	ENST00000398015.3:c.509G>A	p.Arg170Gln	p.R170Q	ENST00000398015	NM_004441.4	170	cGg/cAg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45423009	45423009	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	112	470	0	ENST00000262160.6:c.119G>A	p.Trp40Ter	p.W40*	ENST00000262160	NM_005901.5	40	tGg/tAg																																																																														
APC	0	MSKCC	GRCh37	5	112175193	112175196	+	frameshift_variant	Frame_Shift_Del	DEL	CCCT	CCCT	-			P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	26	309	0	ENST00000257430.4:c.3902_3905del	p.Thr1301SerfsTer3	p.T1301Sfs*3	ENST00000257430	NM_000038.5	1301	aCCCTg/ag																																																																														
BCOR	0	MSKCC	GRCh37	X	39934387	39934387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	196	358	0	ENST00000378444.4:c.212G>A	p.Ser71Asn	p.S71N	ENST00000378444	NM_001123385.1	71	aGc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	78	636	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
FH	0	MSKCC	GRCh37	1	241672012	241672012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	89	622	1	ENST00000366560.3:c.629G>T	p.Gly210Val	p.G210V	ENST00000366560	NM_000143.3	210	gGa/gTa																																																																														
HRAS	0	MSKCC	GRCh37	11	533785	533785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	94	784	0	ENST00000311189.7:c.271G>C	p.Glu91Gln	p.E91Q	ENST00000311189		91	Gag/Cag																																																																														
HRAS	0	MSKCC	GRCh37	11	533885	533885	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	98	799	0	ENST00000311189.7:c.171T>G	p.Asp57Glu	p.D57E	ENST00000311189		57	gaT/gaG																																																																														
ARID2	0	MSKCC	GRCh37	12	46285865	46285865	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	73	635	0	ENST00000334344.6:c.5133G>C	p.Gln1711His	p.Q1711H	ENST00000334344	NM_152641.2	1711	caG/caC																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426686	121426686	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	104	677	0	ENST00000257555.6:c.377A>G	p.His126Arg	p.H126R	ENST00000257555		126	cAc/cGc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271966	15271966	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	115	746	0	ENST00000263388.2:c.6473T>G	p.Leu2158Arg	p.L2158R	ENST00000263388	NM_000435.2	2158	cTc/cGc																																																																														
INHA	0	MSKCC	GRCh37	2	220437213	220437213	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	236	911	2	ENST00000243786.2:c.117T>A	p.Asp39Glu	p.D39E	ENST00000243786	NM_002191.3	39	gaT/gaA																																																																														
ATR	0	MSKCC	GRCh37	3	142238614	142238614	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	34	354	0	ENST00000350721.4:c.4279A>G	p.Ile1427Val	p.I1427V	ENST00000350721	NM_001184.3	1427	Att/Gtt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201809	66201809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	62	700	2	ENST00000273854.3:c.2693C>T	p.Pro898Leu	p.P898L	ENST00000273854	NM_004439.5	898	cCa/cTa																																																																														
FAT1	0	MSKCC	GRCh37	4	187522506	187522506	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	103	684	0	ENST00000441802.2:c.11557A>G	p.Met3853Val	p.M3853V	ENST00000441802	NM_005245.3	3853	Atg/Gtg																																																																														
IL7R	0	MSKCC	GRCh37	5	35871233	35871233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	94	556	0	ENST00000303115.3:c.455C>T	p.Thr152Ile	p.T152I	ENST00000303115	NM_002185.3	152	aCa/aTa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467655	50467655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	69	579	0	ENST00000331340.3:c.890C>A	p.Ala297Asp	p.A297D	ENST00000331340	NM_006060.4	297	gCc/gAc																																																																														
CRLF2	0	MSKCC	GRCh37	X	1331482	1331483	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0031563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	85	756	1	ENST00000381566.1:c.45_46delinsTT	p.Gly16Ter	p.G16*	ENST00000381566		15	ctGGga/ctTTga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	112	483	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	62	290	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78435632	78435632	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	123	437	0	ENST00000370768.2:c.188A>G	p.Gln63Arg	p.Q63R	ENST00000370768	NM_003902.3	63	cAa/cGa																																																																														
PALB2	0	MSKCC	GRCh37	16	23614780	23614780	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0031611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	118	390	0	ENST00000261584.4:c.3561A>T	p.Ter1187TyrextTer5	p.*1187Yext*5	ENST00000261584	NM_024675.3	1187	taA/taT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8389375	8389375	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	115	386	0	ENST00000356435.5:c.4243T>A	p.Tyr1415Asn	p.Y1415N	ENST00000356435		1415	Tac/Aac																																																																														
EGFL7	0	MSKCC	GRCh37	9	139565447	139565447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	216	521	0	ENST00000308874.7:c.617G>A	p.Arg206Lys	p.R206K	ENST00000308874		206	aGg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	314	505	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	367	376	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg																																																																														
SESN3	0	MSKCC	GRCh37	11	94918527	94918527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	128	467	0	ENST00000536441.1:c.655G>C	p.Glu219Gln	p.E219Q	ENST00000536441	NM_144665.3	219	Gaa/Caa																																																																														
INSR	0	MSKCC	GRCh37	19	7125479	7125479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	204	548	0	ENST00000302850.5:c.3073C>G	p.Leu1025Val	p.L1025V	ENST00000302850	NM_000208.2	1025	Ctc/Gtc																																																																														
IRF4	0	MSKCC	GRCh37	6	397205	397205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	89	371	1	ENST00000380956.4:c.590C>T	p.Thr197Met	p.T197M	ENST00000380956	NM_001195286.1	197	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	215	558	2	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106533	27106533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	449	629	0	ENST00000324856.7:c.6144G>A	p.Trp2048Ter	p.W2048*	ENST00000324856	NM_006015.4	2048	tgG/tgA																																																																														
RTEL1	0	MSKCC	GRCh37	20	62326739	62326740	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0031617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	138	651	0	ENST00000508582.2:c.3631_3632del	p.Gln1211GlufsTer11	p.Q1211Efs*11	ENST00000508582		1210	agACag/agag																																																																														
NEGR1	0	MSKCC	GRCh37	1	71873199	71873199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	412	466	1	ENST00000357731.5:c.995G>T	p.Cys332Phe	p.C332F	ENST00000357731	NM_173808.2	332	tGc/tTc																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256530	+	missense_variant	Missense_Mutation	DNP	TG	TG	AA			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	502	565	3	ENST00000369535.4:c.181_182delinsTT	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	CAa/TTa																																																																														
FGF3	0	MSKCC	GRCh37	11	69625453	69625453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	188	551	0	ENST00000334134.2:c.340G>A	p.Glu114Lys	p.E114K	ENST00000334134	NM_005247.2	114	Gag/Aag																																																																														
PGR	0	MSKCC	GRCh37	11	100998306	100998306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	20	64	0	ENST00000325455.5:c.1496C>T	p.Ser499Phe	p.S499F	ENST00000325455	NM_001202474.3	499	tCc/tTc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118359464	118359465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	101	313	0	ENST00000534358.1:c.4469dup	p.Ala1491GlyfsTer9	p.A1491Gfs*9	ENST00000534358	NM_005933.3	1490	cag/cAag																																																																														
CBL	0	MSKCC	GRCh37	11	119148882	119148882	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	88	357	0	ENST00000264033.4:c.1102T>A	p.Tyr368Asn	p.Y368N	ENST00000264033	NM_005188.3	368	Tat/Aat																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435190	18435190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	66	381	1	ENST00000266497.5:c.175G>A	p.Asp59Asn	p.D59N	ENST00000266497		59	Gat/Aat																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18715780	18715780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	58	340	0	ENST00000266497.5:c.3611C>T	p.Ser1204Leu	p.S1204L	ENST00000266497		1204	tCg/tTg																																																																														
POLE	0	MSKCC	GRCh37	12	133241909	133241909	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	88	476	0	ENST00000320574.5:c.2447A>G	p.Tyr816Cys	p.Y816C	ENST00000320574	NM_006231.2	816	tAt/tGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910512	32910512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	123	386	0	ENST00000380152.3:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000380152		674	Gaa/Aaa																																																																														
DICER1	0	MSKCC	GRCh37	14	95583017	95583017	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	98	262	0	ENST00000343455.3:c.1525C>T	p.Arg509Ter	p.R509*	ENST00000343455	NM_177438.2	509	Cga/Tga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923459	9923460	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	133	485	1	ENST00000330684.3:c.1827_1828delinsAA	p.Trp609_Gly610delinsTer	p.W609_G610delins*	ENST00000330684	NM_001134407.1	609	tgGGgc/tgAAgc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032197	10032197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	203	553	1	ENST00000330684.3:c.626C>T	p.Ser209Phe	p.S209F	ENST00000330684	NM_001134407.1	209	tCc/tTc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81922807	81922807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	133	380	1	ENST00000359376.3:c.796C>T	p.Arg266Cys	p.R266C	ENST00000359376	NM_002661.3	266	Cgt/Tgt																																																																														
UPF1	0	MSKCC	GRCh37	19	18968169	18968169	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	170	556	0	ENST00000262803.5:c.2009T>G	p.Val670Gly	p.V670G	ENST00000262803	NM_002911.3	670	gTg/gGg																																																																														
CIC	0	MSKCC	GRCh37	19	42799290	42799290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	121	402	0	ENST00000575354.2:c.4774C>T	p.Pro1592Ser	p.P1592S	ENST00000575354	NM_015125.3	1592	Ccc/Tcc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52714697	52714697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	130	515	2	ENST00000322088.6:c.455C>T	p.Ser152Phe	p.S152F	ENST00000322088	NM_014225.5	152	tCc/tTc																																																																														
ALK	0	MSKCC	GRCh37	2	29462599	29462599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	310	595	0	ENST00000389048.3:c.2302G>A	p.Asp768Asn	p.D768N	ENST00000389048	NM_004304.4	768	Gat/Aat																																																																														
ALK	0	MSKCC	GRCh37	2	29551282	29551282	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	162	643	1	ENST00000389048.3:c.1348C>T	p.Gln450Ter	p.Q450*	ENST00000389048	NM_004304.4	450	Cag/Tag																																																																														
PAK7	0	MSKCC	GRCh37	20	9547022	9547022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	58	214	0	ENST00000353224.5:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000353224	NM_177990.2	334	Gat/Aat																																																																														
TOP1	0	MSKCC	GRCh37	20	39729929	39729929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	188	513	0	ENST00000361337.2:c.1244C>T	p.Ser415Phe	p.S415F	ENST00000361337	NM_003286.2	415	tCc/tTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714415	40714415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	172	400	1	ENST00000373198.4:c.3982G>A	p.Asp1328Asn	p.D1328N	ENST00000373198	NM_133170.3	1328	Gac/Aac																																																																														
PTPRT	0	MSKCC	GRCh37	20	40733252	40733252	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	179	498	1	ENST00000373198.4:c.3554T>C	p.Leu1185Pro	p.L1185P	ENST00000373198	NM_133170.3	1185	cTg/cCg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101050	41101050	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192944843		P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	173	571	0	ENST00000373198.4:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000373198	NM_133170.3	436	Gag/Aag																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091213	29091213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	43	88	0	ENST00000328354.6:c.1277C>T	p.Pro426Leu	p.P426L	ENST00000328354	NM_007194.3	426	cCt/cTt																																																																														
NF2	0	MSKCC	GRCh37	22	30032867	30032867	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	205	350	0	ENST00000338641.4:c.240+2T>C		p.X80_splice	ENST00000338641	NM_000268.3	80																																																																															
TGFBR2	0	MSKCC	GRCh37	3	30713513	30713513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	65	449	1	ENST00000359013.4:c.913C>G	p.Pro305Ala	p.P305A	ENST00000359013	NM_001024847.2	305	Ccc/Gcc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521624	89521624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	113	406	0	ENST00000336596.2:c.2701C>T	p.Leu901Phe	p.L901F	ENST00000336596	NM_005233.5	901	Ctt/Ttt																																																																														
TP63	0	MSKCC	GRCh37	3	189585721	189585721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	115	386	1	ENST00000264731.3:c.982G>A	p.Glu328Lys	p.E328K	ENST00000264731	NM_003722.4	328	Gaa/Aaa																																																																														
TP63	0	MSKCC	GRCh37	3	189604319	189604319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	133	359	0	ENST00000264731.3:c.1486C>T	p.Pro496Ser	p.P496S	ENST00000264731	NM_003722.4	496	Cct/Tct																																																																														
TP63	0	MSKCC	GRCh37	3	189612085	189612085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	144	474	1	ENST00000264731.3:c.1837C>T	p.Pro613Ser	p.P613S	ENST00000264731	NM_003722.4	613	Cct/Tct																																																																														
KDR	0	MSKCC	GRCh37	4	55973926	55973926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	152	450	0	ENST00000263923.4:c.1390G>A	p.Glu464Lys	p.E464K	ENST00000263923	NM_002253.2	464	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	118	273	0				ENST00000310581	NM_198253.2																																																																																
CSF1R	0	MSKCC	GRCh37	5	149439326	149439326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	82	571	2	ENST00000286301.3:c.2069G>A	p.Gly690Asp	p.G690D	ENST00000286301	NM_005211.3	690	gGc/gAc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176519758	176519758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	177	624	0	ENST00000292408.4:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000292408	NM_213647.1	344	Cag/Tag																																																																														
NSD1	0	MSKCC	GRCh37	5	176618984	176618984	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	91	535	0	ENST00000439151.2:c.1027T>A	p.Ser343Thr	p.S343T	ENST00000439151	NM_022455.4	343	Tct/Act																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32180310	32180310	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	88	505	0	ENST00000375023.3:c.2621G>A	p.Trp874Ter	p.W874*	ENST00000375023	NM_004557.3	874	tGg/tAg																																																																														
ROS1	0	MSKCC	GRCh37	6	117631415	117631415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	50	348	0	ENST00000368508.3:c.6263C>T	p.Ser2088Phe	p.S2088F	ENST00000368508	NM_002944.2	2088	tCc/tTc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367272	50367273	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	110	386	1	ENST00000331340.3:c.79_80delinsAA	p.Gly27Asn	p.G27N	ENST00000331340	NM_006060.4	27	GGc/AAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55259417	55259417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	147	325	0	ENST00000275493.2:c.2475G>A	p.Met825Ile	p.M825I	ENST00000275493	NM_005228.3	825	atG/atA																																																																														
MET	0	MSKCC	GRCh37	7	116417463	116417463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	139	336	0	ENST00000397752.3:c.3280C>T	p.His1094Tyr	p.H1094Y	ENST00000397752	NM_000245.2	1094	Cat/Tat																																																																														
PREX2	0	MSKCC	GRCh37	8	68956759	68956759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	187	567	1	ENST00000288368.4:c.877C>T	p.Arg293Trp	p.R293W	ENST00000288368	NM_024870.2	293	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	121	349	1	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	121	349	1	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87359975	87359976	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	67	358	0	ENST00000277120.3:c.1283_1284delinsAA	p.Arg428Gln	p.R428Q	ENST00000277120		428	cGG/cAA																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396841	139396841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	170	541	2	ENST00000277541.6:c.5267T>C	p.Leu1756Pro	p.L1756P	ENST00000277541	NM_017617.3	1756	cTg/cCg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938492	44938493	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	143	271	0	ENST00000377967.4:c.3040_3041delinsTT	p.Pro1014Phe	p.P1014F	ENST00000377967	NM_021140.2	1014	CCc/TTc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858029	152858030	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0031640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	96	170	0	ENST00000406277.2:c.585_586delinsAT	p.Tyr195Ter	p.Y195*	ENST00000406277	NM_152274.4	195	taCCtg/taATtg																																																																														
NSD1	0	MSKCC	GRCh37	5	176631171	176631171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	197	554	0	ENST00000439151.2:c.1114C>T	p.Pro372Ser	p.P372S	ENST00000439151	NM_022455.4	372	Cct/Tct																																																																														
MTOR	0	MSKCC	GRCh37	1	11308150	11308150	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	157	389	1	ENST00000361445.4:c.842G>A	p.Arg281His	p.R281H	ENST00000361445	NM_004958.3	281	cGt/cAt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874964	151874965	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GCCTAGGCATATCTACAGAT			P-0031642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	90	281	0	ENST00000262189.6:c.7554_7573dup	p.Pro2525HisfsTer3	p.P2525Hfs*3	ENST00000262189	NM_170606.2	2525	cct/cATCTGTAGATATGCCTAGGCct																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	63	695	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99251288	99251288	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	59	541	0	ENST00000268035.6:c.592A>C	p.Asn198His	p.N198H	ENST00000268035	NM_000875.3	198	Aac/Cac																																																																														
TSC2	0	MSKCC	GRCh37	16	2124271	2124314	+	frameshift_variant	Frame_Shift_Del	DEL	CCATCTGCAGCGTGGAGATGCCTGACATCATCATCAAGGCGCTG	CCATCTGCAGCGTGGAGATGCCTGACATCATCATCAAGGCGCTG	-			P-0031645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	63	783	1	ENST00000219476.3:c.2428_2471del	p.Ile810CysfsTer58	p.I810Cfs*58	ENST00000219476	NM_000548.3	809	tCCATCTGCAGCGTGGAGATGCCTGACATCATCATCAAGGCGCTG/t																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450367	50450367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	19	522	0	ENST00000331340.3:c.551G>A	p.Arg184Gln	p.R184Q	ENST00000331340	NM_006060.4	184	cGg/cAg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509079	106509079	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	53	594	0	ENST00000359195.3:c.1073A>G	p.Asp358Gly	p.D358G	ENST00000359195	NM_002649.2	358	gAc/gGc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89457213	89457215	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CCA	CCA	-			P-0031645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	28	387	0	ENST00000336596.2:c.1698-4_1698-2del		p.X566_splice	ENST00000336596	NM_005233.5	566																																																																															
TP53	0	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0031648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	367	606	0	ENST00000269305.4:c.559+2T>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
CTLA4	0	MSKCC	GRCh37	2	204737485	204737485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	125	581	0	ENST00000302823.3:c.622G>A	p.Glu208Lys	p.E208K	ENST00000302823	NM_005214.4	208	Gag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112178706	112178706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	279	556	0	ENST00000257430.4:c.7415C>G	p.Ala2472Gly	p.A2472G	ENST00000257430	NM_000038.5	2472	gCt/gGt																																																																														
TAP1	0	MSKCC	GRCh37	6	32820986	32820986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	153	912	2	ENST00000354258.4:c.608G>T	p.Ser203Ile	p.S203I	ENST00000354258	NM_000593.5	203	aGt/aTt																																																																														
LATS1	0	MSKCC	GRCh37	6	150000934	150001106	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACCATCTTATATTTTACTACATCAATAAATTACATTATTATGAACAAACTAAAATAAATTTTATGAGTTTACTTACCACTCTGATAGTACTTAGAATCGTGTGTCCATCTGAAGCCAGTGCAGAGGCCAAAGTCAGTCAATTTAATATGACCATCACGATCAATCAAAATAT	TACCATCTTATATTTTACTACATCAATAAATTACATTATTATGAACAAACTAAAATAAATTTTATGAGTTTACTTACCACTCTGATAGTACTTAGAATCGTGTGTCCATCTGAAGCCAGTGCAGAGGCCAAAGTCAGTCAATTTAATATGACCATCACGATCAATCAAAATAT	-			P-0031648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			10	148	120	0	ENST00000253339.5:c.2498_2593+77del		p.X833_splice	ENST00000253339		833																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	272	632	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	135	701	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BAP1	0	MSKCC	GRCh37	3	52438481	52438481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	51	549	0	ENST00000460680.1:c.1238A>G	p.Asn413Ser	p.N413S	ENST00000460680	NM_004656.3	413	aAc/aGc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575103	48575103	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	112	452	0	ENST00000342988.3:c.297G>A	p.Trp99Ter	p.W99*	ENST00000342988	NM_005359.5	99	tgG/tgA																																																																														
TRAF2	0	MSKCC	GRCh37	9	139802625	139802625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149585522		P-0031657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	211	642	0	ENST00000247668.2:c.470C>T	p.Pro157Leu	p.P157L	ENST00000247668	NM_021138.3	157	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	193	631	0	ENST00000269305.4:c.97-1G>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
TSC2	0	MSKCC	GRCh37	16	2103382	2103400	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCAGCCGGAGCGGCCGC	TTGCAGCCGGAGCGGCCGC	-			P-0031657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	268	745	0	ENST00000219476.3:c.266_284del	p.Leu89TrpfsTer11	p.L89Wfs*11	ENST00000219476	NM_000548.3	89	TTGCAGCCGGAGCGGCCGCtg/tg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992100	72992100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	209	642	0	ENST00000268489.5:c.1945C>G	p.Leu649Val	p.L649V	ENST00000268489	NM_006885.3	649	Ctg/Gtg																																																																														
SPOP	0	MSKCC	GRCh37	17	47688734	47688734	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	195	498	1	ENST00000347630.2:c.566A>T	p.Glu189Val	p.E189V	ENST00000347630	NM_001007230.1	189	gAg/gTg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095938	178095938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	161	515	0	ENST00000397062.3:c.1393C>G	p.His465Asp	p.H465D	ENST00000397062	NM_006164.4	465	Cat/Gat																																																																														
PLK2	0	MSKCC	GRCh37	5	57752371	57752371	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	320	405	0	ENST00000274289.3:c.1202A>G	p.Asp401Gly	p.D401G	ENST00000274289	NM_006622.3	401	gAt/gGt																																																																														
APC	0	MSKCC	GRCh37	5	112176627	112176627	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	172	464	0	ENST00000257430.4:c.5336T>G	p.Ile1779Arg	p.I1779R	ENST00000257430	NM_000038.5	1779	aTa/aGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	131	511	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	138	670	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	64	452	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
TET1	0	MSKCC	GRCh37	10	70405970	70405970	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	153	732	0	ENST00000373644.4:c.3484A>G	p.Lys1162Glu	p.K1162E	ENST00000373644	NM_030625.2	1162	Aag/Gag																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50479252	50479252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	152	472	0	ENST00000394963.4:c.100C>T	p.Pro34Ser	p.P34S	ENST00000394963	NM_003076.4	34	Ccg/Tcg																																																																														
CDH1	0	MSKCC	GRCh37	16	68849552	68849552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	163	664	0	ENST00000261769.5:c.1455C>G	p.Ile485Met	p.I485M	ENST00000261769	NM_004360.3	485	atC/atG																																																																														
SMAD3	0	MSKCC	GRCh37	15	67477191	67477191	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	30	418	0	ENST00000327367.4:c.998A>C	p.Lys333Thr	p.K333T	ENST00000327367	NM_005902.3	333	aAg/aCg																																																																														
PRKCI	0	MSKCC	GRCh37	3	170015159	170015159	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			704	126	525	0	ENST00000295797.4:c.1565T>C	p.Phe522Ser	p.F522S	ENST00000295797	NM_002740.5	522	tTc/tCc																																																																														
PRDM1	0	MSKCC	GRCh37	6	106543578	106543578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	72	339	0	ENST00000369096.4:c.380C>A	p.Pro127His	p.P127H	ENST00000369096	NM_001198.3	127	cCt/cAt																																																																														
JAK2	0	MSKCC	GRCh37	9	5126395	5126395	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023627-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	21	371	0	ENST00000381652.3:c.3240A>C	p.Glu1080Asp	p.E1080D	ENST00000381652	NM_004972.3	1080	gaA/gaC																																																																														
DICER1	0	MSKCC	GRCh37	14	95590533	95590533	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	110	241	0	ENST00000343455.3:c.1376G>A	p.Arg459Lys	p.R459K	ENST00000343455	NM_177438.2	459	aGa/aAa																																																																														
NF1	0	MSKCC	GRCh37	17	29657450	29657450	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	50	484	0	ENST00000358273.4:c.5746G>C	p.Ala1916Pro	p.A1916P	ENST00000358273	NM_001042492.2	1916	Gca/Cca																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11096983	11096983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	177	517	0	ENST00000344626.4:c.478del	p.Gln160ArgfsTer143	p.Q160Rfs*143	ENST00000344626	NM_003072.3	158	gaC/ga																																																																														
EED	0	MSKCC	GRCh37	11	85989482	85989482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	114	510	0	ENST00000263360.6:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000263360	NM_003797.3	414	cGa/cAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717704	89717705	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0030907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	125	561	1	ENST00000371953.3:c.730_731del	p.Pro244SerfsTer8	p.P244Sfs*8	ENST00000371953	NM_000314.4	243	ttCCct/ttct																																																																														
MSH6	0	MSKCC	GRCh37	2	48030705	48030705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	120	483	0	ENST00000234420.5:c.3319G>A	p.Asp1107Asn	p.D1107N	ENST00000234420	NM_000179.2	1107	Gat/Aat																																																																														
STAG2	0	MSKCC	GRCh37	X	123227897	123227897	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	71	531	1	ENST00000218089.9:c.3608A>T	p.Asp1203Val	p.D1203V	ENST00000218089	NM_001042749.1	1203	gAt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	471	766	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
SOX9	0	MSKCC	GRCh37	17	70119758	70119758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	552	779	0	ENST00000245479.2:c.760C>T	p.Arg254Ter	p.R254*	ENST00000245479	NM_000346.3	254	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	234	408	0	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11095038	11095038	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	590	908	0	ENST00000344626.4:c.211C>T	p.Gln71Ter	p.Q71*	ENST00000344626	NM_003072.3	71	Cag/Tag																																																																														
RAF1	0	MSKCC	GRCh37	3	12641916	12641916	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	155	443	0	ENST00000251849.4:c.835-2A>G		p.X279_splice	ENST00000251849	NM_002880.3	279																																																																															
TSC1	0	MSKCC	GRCh37	9	135786485	135786485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	465	761	0	ENST00000298552.3:c.1045C>T	p.Pro349Ser	p.P349S	ENST00000298552	NM_001162426.1	349	Cca/Tca																																																																														
ATRX	0	MSKCC	GRCh37	X	76937038	76937038	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0030927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	175	331	0	ENST00000373344.5:c.3710C>G	p.Ser1237Ter	p.S1237*	ENST00000373344	NM_000489.3	1237	tCa/tGa																																																																														
ARID2	0	MSKCC	GRCh37	12	46245720	46245720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	29	436	4	ENST00000334344.6:c.3814C>T	p.Arg1272Ter	p.R1272*	ENST00000334344	NM_152641.2	1272	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106385	27106386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	26	486	2	ENST00000324856.7:c.5996_5997insC	p.Glu2000Ter	p.E2000*	ENST00000324856	NM_006015.4	1999	ttt/ttCt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	271	741	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	184	234	1	ENST00000257430.4:c.3980C>A	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tAa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211109	36211109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	273	879	1	ENST00000222270.7:c.860G>A	p.Arg287His	p.R287H	ENST00000222270	NM_014727.1	287	cGt/cAt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11145623	11145623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	235	712	0	ENST00000344626.4:c.3985C>T	p.Arg1329Cys	p.R1329C	ENST00000344626	NM_003072.3	1329	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	158	593	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	220	562	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	113	534	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0031136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	53	341	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
CARD11	0	MSKCC	GRCh37	7	2962846	2962846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	43	575	0	ENST00000396946.4:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000396946	NM_032415.4	688	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	21	245	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																														
RBM10	0	MSKCC	GRCh37	X	47044901	47044901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	116	741	0	ENST00000329236.7:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000329236	NM_001204466.1	665	Gag/Tag																																																																														
SDHA	0	MSKCC	GRCh37	5	235404	235404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	243	535	0	ENST00000264932.6:c.1210C>T	p.Pro404Ser	p.P404S	ENST00000264932	NM_004168.2	404	Ccc/Tcc																																																																														
RRAS2	0	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	115	474	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	68	364	0	ENST00000274335.5:c.1727_1729delCGA	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	106	445	1	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	153	730	3	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	285	471	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	152	594	1	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																														
BCL6	0	MSKCC	GRCh37	3	187446270	187446270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	124	569	0	ENST00000232014.4:c.1418delC	p.Pro473ArgfsTer117	p.P473Rfs*117	ENST00000232014	NM_001130845.1	473	cCg/cg																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	313	507	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
BRD4	0	MSKCC	GRCh37	19	15366309	15366309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	115	509	0	ENST00000263377.2:c.1846C>T	p.Arg616Trp	p.R616W	ENST00000263377	NM_058243.2	616	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	155	651	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276861	15276861	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	161	704	1	ENST00000263388.2:c.5404delG	p.Ala1802LeufsTer23	p.A1802Lfs*23	ENST00000263388	NM_000435.2	1802	Gct/ct																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	93	319	0	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																														
SMO	6608	MSKCC	GRCh37	7	128829075	128829075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1247591045		P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	13	26	0	ENST00000249373.3:c.88del	p.Ala30ArgfsTer25	p.A30Rfs*25	ENST00000249373	NM_005631.4	28	cGg/cg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	186	785	4	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216712	36216712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	112	435	1	ENST00000222270.7:c.3878G>A	p.Arg1293His	p.R1293H	ENST00000222270	NM_014727.1	1293	cGc/cAc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	91	451	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	104	818	5	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201692	66201692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	118	510	0	ENST00000273854.3:c.2810G>A	p.Arg937His	p.R937H	ENST00000273854	NM_004439.5	937	cGt/cAt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	159	610	7	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
APC	0	MSKCC	GRCh37	5	112174188	112174189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	199	482	0	ENST00000257430.4:c.2898dup	p.Val967CysfsTer3	p.V967Cfs*3	ENST00000257430	NM_000038.5	966	agt/agTt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36220184	36220184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	134	527	1	ENST00000222270.7:c.4904G>A	p.Arg1635Gln	p.R1635Q	ENST00000222270	NM_014727.1	1635	cGa/cAa																																																																														
SDHA	0	MSKCC	GRCh37	5	226052	226052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	64	97	0	ENST00000264932.6:c.511C>T	p.Arg171Cys	p.R171C	ENST00000264932	NM_004168.2	171	Cgt/Tgt																																																																														
GATA3	0	MSKCC	GRCh37	10	8100399	8100399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	183	720	1	ENST00000346208.3:c.373G>A	p.Gly125Ser	p.G125S	ENST00000346208		125	Ggc/Agc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435156	49435156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	99	451	0	ENST00000301067.7:c.6397G>A	p.Ala2133Thr	p.A2133T	ENST00000301067	NM_003482.3	2133	Gcc/Acc																																																																														
EZH1	0	MSKCC	GRCh37	17	40860051	40860051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	201	596	0	ENST00000428826.2:c.1585C>T	p.Arg529Cys	p.R529C	ENST00000428826		529	Cgc/Tgc																																																																														
GNA11	0	MSKCC	GRCh37	19	3115000	3115000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	219	712	1	ENST00000078429.4:c.535G>A	p.Val179Met	p.V179M	ENST00000078429	NM_002067.2	179	Gtg/Atg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11143964	11143964	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	129	455	1	ENST00000344626.4:c.3547-2A>G		p.X1183_splice	ENST00000344626	NM_003072.3	1183																																																																															
PIK3R2	0	MSKCC	GRCh37	19	18266718	18266718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	185	617	1	ENST00000222254.8:c.29G>A	p.Arg10His	p.R10H	ENST00000222254	NM_005027.3	10	cGc/cAc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224257	36224273	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCCGCCCCGCCAGG	CAGCCCGCCCCGCCAGG	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	171	684	0	ENST00000222270.7:c.6808_6824del	p.Ser2270HisfsTer27	p.S2270Hfs*27	ENST00000222270	NM_014727.1	2269	gcCAGCCCGCCCCGCCAGGcc/gccc																																																																														
CIC	0	MSKCC	GRCh37	19	42793331	42793331	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	125	607	0	ENST00000575354.2:c.1135-2A>G		p.X379_splice	ENST00000575354	NM_015125.3	379																																																																															
POLD1	0	MSKCC	GRCh37	19	50921184	50921184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	140	670	0	ENST00000440232.2:c.3304C>A	p.Pro1102Thr	p.P1102T	ENST00000440232	NM_002691.3	1102	Cct/Act																																																																														
ATR	0	MSKCC	GRCh37	3	142177831	142177831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	98	397	0	ENST00000350721.4:c.7472T>C	p.Val2491Ala	p.V2491A	ENST00000350721	NM_001184.3	2491	gTa/gCa																																																																														
SOX2	0	MSKCC	GRCh37	3	181430630	181430630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	126	509	0	ENST00000325404.1:c.482C>T	p.Ala161Val	p.A161V	ENST00000325404	NM_003106.3	161	gCg/gTg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807803	1807803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	145	722	0	ENST00000260795.2:c.1862G>A	p.Arg621His	p.R621H	ENST00000260795		621	cGc/cAc																																																																														
TET2	0	MSKCC	GRCh37	4	106158109	106158109	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	101	396	0	ENST00000380013.4:c.3014del	p.Lys1005ArgfsTer2	p.K1005Rfs*2	ENST00000380013	NM_001127208.2	1004	Aaa/aa																																																																														
FAT1	0	MSKCC	GRCh37	4	187557322	187557322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	193	580	0	ENST00000441802.2:c.4040C>A	p.Ser1347Tyr	p.S1347Y	ENST00000441802	NM_005245.3	1347	tCc/tAc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149515379	149515379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	342	649	1	ENST00000261799.4:c.103G>A	p.Val35Ile	p.V35I	ENST00000261799	NM_002609.3	35	Gtc/Atc																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197360	26197360	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	121	423	0	ENST00000356476.2:c.119A>C	p.His40Pro	p.H40P	ENST00000356476		40	cAc/cCc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467928	50467928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	115	452	1	ENST00000331340.3:c.1163C>T	p.Ala388Val	p.A388V	ENST00000331340	NM_006060.4	388	gCg/gTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151856144	151856144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	76	407	0	ENST00000262189.6:c.11474C>A	p.Ala3825Asp	p.A3825D	ENST00000262189	NM_170606.2	3825	gCt/gAt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877053	151877054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	104	462	0	ENST00000262189.6:c.7307dupC	p.Pro2437ThrfsTer8	p.P2437Tfs*8	ENST00000262189	NM_170606.2	2436	cca/ccCa																																																																														
SOX17	0	MSKCC	GRCh37	8	55371694	55371694	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	145	598	0	ENST00000297316.4:c.384del	p.His128GlnfsTer18	p.H128Qfs*18	ENST00000297316	NM_022454.3	128	caC/ca																																																																														
TEK	0	MSKCC	GRCh37	9	27185621	27185621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	135	580	0	ENST00000380036.4:c.1321G>A	p.Val441Ile	p.V441I	ENST00000380036	NM_000459.3	441	Gtt/Att																																																																														
NTRK2	0	MSKCC	GRCh37	9	87356833	87356833	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	95	444	0	ENST00000277120.3:c.1186A>C	p.Ile396Leu	p.I396L	ENST00000277120		396	Att/Ctt																																																																														
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	448	770	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0031248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	84	303	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63530058	63530058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	320	597	0	ENST00000307078.5:c.2377G>T	p.Glu793Ter	p.E793*	ENST00000307078	NM_004655.3	793	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	502	604	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604704	48604704	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	190	466	0	ENST00000342988.3:c.1526G>A	p.Trp509Ter	p.W509*	ENST00000342988	NM_005359.5	509	tGg/tAg																																																																														
APC	0	MSKCC	GRCh37	5	112175173	112175173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	121	308	0	ENST00000257430.4:c.3883del	p.Glu1295LysfsTer10	p.E1295Kfs*10	ENST00000257430	NM_000038.5	1294	caG/ca																																																																														
FAT1	0	MSKCC	GRCh37	4	187524175	187524176	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GGGCACCTTCCCTCTTCATTCAAAGAGGGGAG			P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	109	464	0	ENST00000441802.2:c.11351-19_11363dup	p.Pro3789SerfsTer4	p.P3789Sfs*4	ENST00000441802	NM_005245.3	3788	cca/ccCTCCCCTCTTTGAATGAAGAGGGAAGGTGCCCa																																																																														
APC	0	MSKCC	GRCh37	5	112116549	112116550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	193	446	0	ENST00000257430.4:c.595dup	p.Ala199GlyfsTer53	p.A199Gfs*53	ENST00000257430	NM_000038.5	198	-/G																																																																														
CARD11	0	MSKCC	GRCh37	7	2953070	2953070	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	203	570	0	ENST00000396946.4:c.2870A>C	p.Asn957Thr	p.N957T	ENST00000396946	NM_032415.4	957	aAc/aCc																																																																														
PREX2	0	MSKCC	GRCh37	8	68968136	68968136	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	193	603	0	ENST00000288368.4:c.1165A>T	p.Met389Leu	p.M389L	ENST00000288368	NM_024870.2	389	Atg/Ttg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	212	385	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	120	370	0				ENST00000310581	NM_198253.2																																																																																
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	53	637	3	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	113	639	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0031459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	91	650	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46527695	46527695	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	28	435	0	ENST00000262741.5:c.670A>C	p.Lys224Gln	p.K224Q	ENST00000262741	NM_003629.3	224	Aaa/Caa																																																																														
EGFR	0	MSKCC	GRCh37	7	55260498	55260498	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	102	597	0	ENST00000275493.2:c.2665A>G	p.Arg889Gly	p.R889G	ENST00000275493	NM_005228.3	889	Aga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	15	608	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0031461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	17	476	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023702	31023702	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	70	625	0	ENST00000375687.4:c.3187C>T	p.Gln1063Ter	p.Q1063*	ENST00000375687	NM_015338.5	1063	Cag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	137	708	1	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259262	89259262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	28	361	0	ENST00000336596.2:c.406C>G	p.Arg136Gly	p.R136G	ENST00000336596	NM_005233.5	136	Cga/Gga																																																																														
TSC2	0	MSKCC	GRCh37	16	2131647	2131647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	74	707	0	ENST00000219476.3:c.3662C>G	p.Ser1221Trp	p.S1221W	ENST00000219476	NM_000548.3	1221	tCg/tGg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829347	72829347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	68	542	0	ENST00000268489.5:c.7234G>A	p.Glu2412Lys	p.E2412K	ENST00000268489	NM_006885.3	2412	Gag/Aag																																																																														
JAK3	0	MSKCC	GRCh37	19	17942062	17942062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	162	679	0	ENST00000458235.1:c.2953G>A	p.Glu985Lys	p.E985K	ENST00000458235	NM_000215.3	985	Gag/Aag																																																																														
PREX2	0	MSKCC	GRCh37	8	69136839	69136840	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0031461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	34	374	1	ENST00000288368.4:c.4753_4754delinsAA	p.Arg1585Lys	p.R1585K	ENST00000288368	NM_024870.2	1585	CGg/AAg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44820547	44820548	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0031461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	14	255	0	ENST00000377967.4:c.247_248del	p.Leu83AsnfsTer5	p.L83Nfs*5	ENST00000377967	NM_021140.2	82	TCt/t																																																																														
PTEN	0	MSKCC	GRCh37	10	89720808	89720808	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	133	268	0	ENST00000371953.3:c.959T>C	p.Leu320Ser	p.L320S	ENST00000371953	NM_000314.4	320	tTa/tCa																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	304	541	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	320	568	0	ENST00000269305.4:c.993G>T	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	327	555	2	ENST00000301067.7:c.15536G>T	p.Arg5179Leu	p.R5179L	ENST00000301067	NM_003482.3	5179	cGt/cTt																																																																														
MTOR	0	MSKCC	GRCh37	1	11288754	11288754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	228	477	0	ENST00000361445.4:c.3001A>G	p.Ile1001Val	p.I1001V	ENST00000361445	NM_004958.3	1001	Att/Gtt																																																																														
ELF3	0	MSKCC	GRCh37	1	201981875	201981875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	429	716	0	ENST00000359651.3:c.586G>A	p.Val196Ile	p.V196I	ENST00000359651		196	Gtc/Atc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16005051	16005051	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	284	519	0	ENST00000268712.3:c.2203G>T	p.Glu735Ter	p.E735*	ENST00000268712	NM_006311.3	735	Gag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610275	10610275	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	386	751	0	ENST00000171111.5:c.435C>G	p.Ile145Met	p.I145M	ENST00000171111	NM_203500.1	145	atC/atG																																																																														
PARK2	0	MSKCC	GRCh37	6	161969942	161969942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	259	504	0	ENST00000366898.1:c.1027C>A	p.Pro343Thr	p.P343T	ENST00000366898	NM_004562.2	343	Ccg/Acg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5238954	5238956	+	missense_variant	Missense_Mutation	ONP	CCA	CCA	ACC			P-0031462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	172	482	0	ENST00000357368.4:c.1823_1825delinsGGT	p.Val608_Val609delinsGlyLeu	p.V608_V609delinsGL	ENST00000357368	NM_002850.3	608	gTGGtg/gGGTtg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	140	426	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	34	342	0				ENST00000310581	NM_198253.2																																																																																
INPP4B	0	MSKCC	GRCh37	4	143003217	143003217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	61	372	0	ENST00000262992.4:c.2609A>G	p.Asp870Gly	p.D870G	ENST00000262992	NM_001101669.1	870	gAc/gGc																																																																														
PARK2	0	MSKCC	GRCh37	6	161781147	161781147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145135117		P-0031469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	46	484	0	ENST00000366898.1:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000366898	NM_004562.2	420	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	66	439	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0031506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	95	820	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
RNF43	0	MSKCC	GRCh37	17	56492871	56492889	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTGCAGGGTAGCCATCA	GCCTGCAGGGTAGCCATCA	-			P-0031506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	42	358	0	ENST00000407977.2:c.50_68del	p.Leu17GlnfsTer28	p.L17Qfs*28	ENST00000407977		17	cTGATGGCTACCCTGCAGGCa/ca																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	18	390	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	55	566	0	ENST00000397062.3:c.246A>T	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaT																																																																														
RARA	0	MSKCC	GRCh37	17	38510611	38510611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	48	542	0	ENST00000254066.5:c.865G>A	p.Gly289Arg	p.G289R	ENST00000254066	NM_000964.3	289	Ggg/Agg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	32	283	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
MED12	0	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	24	559	0	ENST00000374080.3:c.131G>T	p.Gly44Val	p.G44V	ENST00000374080		44	gGt/gTt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	45	573	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	64	682	4	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67200675	67200675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	46	586	0	ENST00000312629.5:c.786G>A	p.Met262Ile	p.M262I	ENST00000312629	NM_003952.2	262	atG/atA																																																																														
INPPL1	0	MSKCC	GRCh37	11	71939233	71939233	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	53	499	0	ENST00000298229.2:c.183-1G>T		p.X61_splice	ENST00000298229	NM_001567.3	61																																																																															
GLI1	0	MSKCC	GRCh37	12	57865726	57865726	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	46	612	0	ENST00000228682.2:c.3206del	p.Gly1069AlafsTer20	p.G1069Afs*20	ENST00000228682	NM_005269.2	1068	cGg/cg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15296204	15296204	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	63	632	0	ENST00000263388.2:c.2160T>A	p.Cys720Ter	p.C720*	ENST00000263388	NM_000435.2	720	tgT/tgA																																																																														
ATR	0	MSKCC	GRCh37	3	142212030	142212030	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs148465901		P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	45	463	0	ENST00000350721.4:c.6022C>T	p.Arg2008Ter	p.R2008*	ENST00000350721	NM_001184.3	2008	Cga/Tga																																																																														
TP63	0	MSKCC	GRCh37	3	189604298	189604298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138832017		P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	40	479	0	ENST00000264731.3:c.1465G>A	p.Ala489Thr	p.A489T	ENST00000264731	NM_003722.4	489	Gcc/Acc																																																																														
APC	0	MSKCC	GRCh37	5	112177449	112177449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	40	350	0	ENST00000257430.4:c.6158C>A	p.Pro2053His	p.P2053H	ENST00000257430	NM_000038.5	2053	cCt/cAt																																																																														
FLT4	0	MSKCC	GRCh37	5	180047908	180047908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	59	636	0	ENST00000261937.6:c.2267G>A	p.Cys756Tyr	p.C756Y	ENST00000261937	NM_182925.4	756	tGc/tAc																																																																														
FLT4	0	MSKCC	GRCh37	5	180057006	180057006	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	71	679	0	ENST00000261937.6:c.613C>T	p.Gln205Ter	p.Q205*	ENST00000261937	NM_182925.4	205	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	100	578	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	154	732	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	35	230	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
APC	0	MSKCC	GRCh37	5	112173590	112173590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	61	403	0	ENST00000257430.4:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000257430	NM_000038.5	767	Cag/Tag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251937	153251937	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	70	653	0	ENST00000281708.4:c.1069A>T	p.Arg357Ter	p.R357*	ENST00000281708	NM_033632.3	357	Aga/Tga																																																																														
NSD1	0	MSKCC	GRCh37	5	176707798	176707798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	80	489	0	ENST00000439151.2:c.5855G>A	p.Arg1952Gln	p.R1952Q	ENST00000439151	NM_022455.4	1952	cGg/cAg																																																																														
IRF4	0	MSKCC	GRCh37	6	394926	394926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	115	534	0	ENST00000380956.4:c.322G>A	p.Glu108Lys	p.E108K	ENST00000380956	NM_001195286.1	108	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	97	614	1	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																														
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	209	648	2	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																														
CTCF	0	MSKCC	GRCh37	16	67670728	67670728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	109	548	1	ENST00000264010.4:c.1973G>T	p.Arg658Ile	p.R658I	ENST00000264010	NM_006565.3	658	aGa/aTa																																																																														
JAK3	0	MSKCC	GRCh37	19	17945719	17945719	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140655992		P-0031583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	140	638	4	ENST00000458235.1:c.2141C>T	p.Thr714Met	p.T714M	ENST00000458235	NM_000215.3	714	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578551	7578565	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTACTGTAGGAAGA	AGTACTGTAGGAAGA	-			P-0031583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	267	698	0	ENST00000269305.4:c.376-11_379del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
RHOA	0	MSKCC	GRCh37	3	49413009	49413009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	122	613	0	ENST00000418115.1:c.14G>T	p.Arg5Leu	p.R5L	ENST00000418115	NM_001664.2	5	cGg/cTg																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502855	186502856	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAG			P-0031583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	122	504	0	ENST00000323963.5:c.316_318dup	p.Val106dup	p.V106dup	ENST00000323963		106	cta/cTAGta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	92	678	2	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	144	438	0	ENST00000274335.5:c.1718T>C	p.Leu573Pro	p.L573P	ENST00000274335		573	cTg/cCg																																																																														
PAX5	0	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	41	591	0	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																														
MGA	0	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	91	523	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604668	48604668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	128	378	0	ENST00000342988.3:c.1490G>A	p.Arg497His	p.R497H	ENST00000342988	NM_005359.5	497	cGc/cAc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94211962	94211962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	95	621	0	ENST00000323929.3:c.483G>C	p.Lys161Asn	p.K161N	ENST00000323929	NM_005591.3	161	aaG/aaC																																																																														
SOX9	0	MSKCC	GRCh37	17	70119925	70119926	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	125	503	0	ENST00000245479.2:c.928dup	p.His310ProfsTer268	p.H310Pfs*268	ENST00000245479	NM_000346.3	309	-/C																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39613862	39613862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	172	533	0	ENST00000262039.4:c.1780C>A	p.Pro594Thr	p.P594T	ENST00000262039	NM_002647.2	594	Cct/Act																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266024	41266592	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	GATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACA	GATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACA	-			P-0031584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	98	236	0	ENST00000349496.5:c.25_393del		p.X9_splice	ENST00000349496	NM_001904.3	9	ttGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAg/ttg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	50	450	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	159	499	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
TP53	0	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	116	714	2	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	55	342	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																														
TP53	0	MSKCC	GRCh37	17	7579566	7579566	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	120	661	0	ENST00000269305.4:c.121G>C	p.Asp41His	p.D41H	ENST00000269305	NM_001126112.2	41	Gat/Cat																																																																														
LATS1	0	MSKCC	GRCh37	6	150001390	150001390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	38	602	0	ENST00000253339.5:c.2214G>C	p.Lys738Asn	p.K738N	ENST00000253339		738	aaG/aaC																																																																														
NF1	0	MSKCC	GRCh37	17	29592283	29592283	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	86	290	0	ENST00000358273.4:c.4761G>C	p.Leu1587Phe	p.L1587F	ENST00000358273	NM_001042492.2	1587	ttG/ttC																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489566	56489566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	49	477	0	ENST00000267101.3:c.2031G>C	p.Met677Ile	p.M677I	ENST00000267101	NM_001982.3	677	atG/atC																																																																														
CSDE1	0	MSKCC	GRCh37	1	115269681	115269681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	115	512	0	ENST00000438362.2:c.1525G>A	p.Asp509Asn	p.D509N	ENST00000438362	NM_001242891.1	509	Gac/Aac																																																																														
FH	0	MSKCC	GRCh37	1	241667387	241667387	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	131	551	0	ENST00000366560.3:c.1063G>C	p.Glu355Gln	p.E355Q	ENST00000366560	NM_000143.3	355	Gaa/Caa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436060	49436060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	45	388	1	ENST00000301067.7:c.5921C>T	p.Thr1974Met	p.T1974M	ENST00000301067	NM_003482.3	1974	aCg/aTg																																																																														
POLE	0	MSKCC	GRCh37	12	133236080	133236080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	68	443	0	ENST00000320574.5:c.3076G>C	p.Asp1026His	p.D1026H	ENST00000320574	NM_006231.2	1026	Gac/Cac																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349811	89349811	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	150	744	0	ENST00000301030.4:c.3139C>G	p.Gln1047Glu	p.Q1047E	ENST00000301030	NM_001256183.1	1047	Cag/Gag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15961304	15961304	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	134	572	0	ENST00000268712.3:c.6085C>T	p.Gln2029Ter	p.Q2029*	ENST00000268712	NM_006311.3	2029	Cag/Tag																																																																														
CDK12	0	MSKCC	GRCh37	17	37627877	37627877	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	129	548	1	ENST00000447079.4:c.1792C>T	p.Gln598Ter	p.Q598*	ENST00000447079	NM_015083.1	598	Cag/Tag																																																																														
TET2	0	MSKCC	GRCh37	4	106196866	106196866	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	68	380	0	ENST00000380013.4:c.5199C>G	p.Phe1733Leu	p.F1733L	ENST00000380013	NM_001127208.2	1733	ttC/ttG																																																																														
PIM1	0	MSKCC	GRCh37	6	37138644	37138644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	87	644	1	ENST00000373509.5:c.178G>A	p.Asp60Asn	p.D60N	ENST00000373509	NM_002648.3	60	Gac/Aac																																																																														
LATS1	0	MSKCC	GRCh37	6	150001578	150001578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	27	336	0	ENST00000253339.5:c.2026G>C	p.Asp676His	p.D676H	ENST00000253339		676	Gat/Cat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8404540	8404540	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	58	266	0	ENST00000356435.5:c.4207G>C	p.Glu1403Gln	p.E1403Q	ENST00000356435		1403	Gaa/Caa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391059	139391059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	115	717	0	ENST00000277541.6:c.7132C>A	p.His2378Asn	p.H2378N	ENST00000277541	NM_017617.3	2378	Cac/Aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003061-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	89	474	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279971	18279971	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	162	538	0	ENST00000222254.8:c.2054T>G	p.Leu685Arg	p.L685R	ENST00000222254	NM_005027.3	685	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578229	7578237	+	inframe_deletion	In_Frame_Del	DEL	TCCAAATAC	TCCAAATAC	-			P-0003678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	199	703	0	ENST00000269305.4:c.612_620delGTATTTGGA	p.Glu204_Leu206del	p.E204_L206del	ENST00000269305	NM_001126112.2	204	gaGTATTTGGAt/gat																																																																														
ROS1	0	MSKCC	GRCh37	6	117639384	117639384	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	62	579	0	ENST00000368508.3:c.5972A>C	p.Lys1991Thr	p.K1991T	ENST00000368508	NM_002944.2	1991	aAg/aCg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964491	70964491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	53	664	1	ENST00000276594.2:c.1537G>A	p.Gly513Arg	p.G513R	ENST00000276594	NM_024504.3	513	Ggg/Agg																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134566	41134566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			565	63	530	1	ENST00000379561.5:c.1062G>T	p.Lys354Asn	p.K354N	ENST00000379561	NM_002015.3	354	aaG/aaT																																																																														
GPS2	0	MSKCC	GRCh37	17	7217441	7217441	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			550	59	578	0	ENST00000380728.2:c.355A>T	p.Ser119Cys	p.S119C	ENST00000380728		119	Agc/Tgc																																																																														
AXL	0	MSKCC	GRCh37	19	41754651	41754651	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			736	61	686	0	ENST00000301178.4:c.1637A>T	p.Glu546Val	p.E546V	ENST00000301178	NM_021913.4	546	gAg/gTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212295711	212295711	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	55	575	0	ENST00000342788.4:c.2602T>G	p.Leu868Val	p.L868V	ENST00000342788	NM_005235.2	868	Ttg/Gtg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8376641	8376641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003678-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			744	48	587	0	ENST00000356435.5:c.4472C>A	p.Ala1491Asp	p.A1491D	ENST00000356435		1491	gCc/gAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			730	174	589	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	52	400	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	50	290	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
SESN2	0	MSKCC	GRCh37	1	28601366	28601378	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATCCAGCGGC	CTGATCCAGCGGC	GT			P-0007322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			738	67	530	2	ENST00000253063.3:c.1051_1063delinsGT	p.Leu351ValfsTer4	p.L351Vfs*4	ENST00000253063	NM_031459.4	351	CTGATCCAGCGGCtt/GTtt																																																																														
TRAF7	0	MSKCC	GRCh37	16	2226356	2226361	+	inframe_deletion	In_Frame_Del	DEL	TTCTCA	TTCTCA	-			P-0007322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			922	118	629	0	ENST00000326181.6:c.1969_1974del	p.Phe657_Ser658del	p.F657_S658del	ENST00000326181	NM_032271.2	657	TTCTCA/-																																																																														
SLX4	0	MSKCC	GRCh37	16	3647921	3647921	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146021821		P-0007322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			996	83	669	2	ENST00000294008.3:c.1243G>A	p.Glu415Lys	p.E415K	ENST00000294008	NM_032444.2	415	Gag/Aag																																																																														
RASA1	0	MSKCC	GRCh37	5	86658465	86658465	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	34	245	0	ENST00000274376.6:c.1430A>G	p.Lys477Arg	p.K477R	ENST00000274376	NM_002890.2	477	aAg/aGg																																																																														
NBN	0	MSKCC	GRCh37	8	90971001	90971001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	47	357	0	ENST00000265433.3:c.1076A>G	p.Asn359Ser	p.N359S	ENST00000265433	NM_002485.4	359	aAc/aGc																																																																														
EGFR	0	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	GAAC			P-0025155-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	152	634	0	ENST00000275493.2:c.2239_2248delinsGAAC	p.Leu747_Ala750delinsGluPro	p.L747_A750delinsEP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/GAACca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			609	46	470	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	37	344	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	37	344	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
STK11	0	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			717	70	575	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602757	10602757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			801	70	638	0	ENST00000171111.5:c.821A>G	p.His274Arg	p.H274R	ENST00000171111	NM_203500.1	274	cAc/cGc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11129670	11129670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			722	68	571	0	ENST00000344626.4:c.2476G>C	p.Ala826Pro	p.A826P	ENST00000344626	NM_003072.3	826	Gcc/Ccc																																																																														
ETV1	0	MSKCC	GRCh37	7	13935516	13935516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	47	296	0	ENST00000405192.2:c.1340C>T	p.Pro447Leu	p.P447L	ENST00000405192	NM_001163147.1	447	cCc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0027418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	415	574	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7579701	7579702	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0027418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	237	528	0	ENST00000269305.4:c.94_95del	p.Leu32ValfsTer10	p.L32Vfs*10	ENST00000269305	NM_001126112.2	32	CTg/g																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974773	21974777	+	frameshift_variant	Frame_Shift_Del	DEL	CGTGG	CGTGG	-			P-0027418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	130	188	0	ENST00000304494.5:c.50_54del	p.Ala17GlyfsTer25	p.A17Gfs*25	ENST00000304494	NM_000077.4	17	gCCACG/g																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974773	21974777	+	frameshift_variant	Frame_Shift_Del	DEL	CGTGG	CGTGG	-			P-0027418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	130	188	0	ENST00000304494.5:c.50_54del	p.Ala17GlyfsTer25	p.A17Gfs*25	ENST00000304494	NM_000077.4	17	gCCACG/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0027544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	42	627	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PREX2	0	MSKCC	GRCh37	8	69028057	69028057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	17	630	4	ENST00000288368.4:c.3216C>G	p.Asp1072Glu	p.D1072E	ENST00000288368	NM_024870.2	1072	gaC/gaG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	192	535	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RB1	0	MSKCC	GRCh37	13	49033968	49033968	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0027684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	88	440	0	ENST00000267163.4:c.2105A>T	p.Gln702Leu	p.Q702L	ENST00000267163	NM_000321.2	702	cAa/cTa																																																																														
STK11	0	MSKCC	GRCh37	19	1219359	1219360	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0027684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	136	737	3	ENST00000326873.7:c.411_412delinsAT	p.Glu138Ter	p.E138*	ENST00000326873	NM_000455.4	137	caGGaa/caATaa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602490	10602490	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	151	480	0	ENST00000171111.5:c.1088G>C	p.Ser363Thr	p.S363T	ENST00000171111	NM_203500.1	363	aGc/aCc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170515	11170516	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	198	724	0	ENST00000344626.4:c.4722_4723insT	p.Ser1575Ter	p.S1575*	ENST00000344626	NM_003072.3	1574	-/T																																																																														
STK40	0	MSKCC	GRCh37	1	36820994	36820994	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs145487256		P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	124	798	1	ENST00000373129.3:c.383G>T	p.Arg128Leu	p.R128L	ENST00000373129	NM_032017.1	128	cGg/cTg																																																																														
RAD52	0	MSKCC	GRCh37	12	1023170	1023170	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	268	712	0	ENST00000358495.3:c.1085A>T	p.Asn362Ile	p.N362I	ENST00000358495	NM_134424.2	362	aAc/aTc																																																																														
GLI1	0	MSKCC	GRCh37	12	57865568	57865568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	744	764	2	ENST00000228682.2:c.3045G>T	p.Glu1015Asp	p.E1015D	ENST00000228682	NM_005269.2	1015	gaG/gaT																																																																														
FLT3	0	MSKCC	GRCh37	13	28599044	28599044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	368	701	0	ENST00000241453.7:c.2244C>A	p.Asp748Glu	p.D748E	ENST00000241453	NM_004119.2	748	gaC/gaA																																																																														
SMAD3	0	MSKCC	GRCh37	15	67358526	67358526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	166	483	0	ENST00000327367.4:c.34G>T	p.Val12Leu	p.V12L	ENST00000327367	NM_005902.3	12	Gtg/Ttg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81922790	81922790	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	244	451	0	ENST00000359376.3:c.779A>T	p.Gln260Leu	p.Q260L	ENST00000359376	NM_002661.3	260	cAg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	618	792	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
RAD51C	0	MSKCC	GRCh37	17	56770037	56770037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	387	571	2	ENST00000337432.4:c.33G>T	p.Gln11His	p.Q11H	ENST00000337432	NM_058216.2	11	caG/caT																																																																														
TCF3	0	MSKCC	GRCh37	19	1625692	1625692	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	355	879	0	ENST00000344749.5:c.382G>C	p.Gly128Arg	p.G128R	ENST00000344749	NM_001136139.2	128	Ggc/Cgc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170492	11170492	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	677	903	0	ENST00000344626.4:c.4699G>T	p.Glu1567Ter	p.E1567*	ENST00000344626	NM_003072.3	1567	Gag/Tag																																																																														
FOXP1	0	MSKCC	GRCh37	3	71027101	71027102	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	444	634	0	ENST00000318789.4:c.1225dup	p.Thr409AsnfsTer52	p.T409Nfs*52	ENST00000318789	NM_032682.5	409	acc/aAcc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201747	66201747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs146343247		P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	218	581	0	ENST00000273854.3:c.2755C>T	p.Arg919Ter	p.R919*	ENST00000273854	NM_004439.5	919	Cga/Tga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201786	66201786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	404	607	0	ENST00000273854.3:c.2716G>T	p.Ala906Ser	p.A906S	ENST00000273854	NM_004439.5	906	Gct/Tct																																																																														
FAT1	0	MSKCC	GRCh37	4	187549745	187549745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	92	432	0	ENST00000441802.2:c.4496C>A	p.Pro1499Gln	p.P1499Q	ENST00000441802	NM_005245.3	1499	cCa/cAa																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120476	94120476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	237	452	0	ENST00000369303.4:c.575G>C	p.Cys192Ser	p.C192S	ENST00000369303	NM_004440.3	192	tGc/tCc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38157081	38157081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	862	845	2	ENST00000317025.8:c.2639C>A	p.Pro880His	p.P880H	ENST00000317025	NM_023034.1	880	cCc/cAc																																																																														
PREX2	0	MSKCC	GRCh37	8	69129930	69129930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	165	405	2	ENST00000288368.4:c.4684G>T	p.Ala1562Ser	p.A1562S	ENST00000288368	NM_024870.2	1562	Gct/Tct																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518007	8518007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	61	546	3	ENST00000356435.5:c.1384C>T	p.His462Tyr	p.H462Y	ENST00000356435		462	Cat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	44	385	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860829	151860829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	28	279	0	ENST00000262189.6:c.9833C>A	p.Pro3278His	p.P3278H	ENST00000262189	NM_170606.2	3278	cCt/cAt																																																																														
GATA3	0	MSKCC	GRCh37	10	8100438	8100438	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	208	692	1	ENST00000346208.3:c.412T>A	p.Ser138Thr	p.S138T	ENST00000346208		138	Tcc/Acc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94153299	94153299	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	254	464	1	ENST00000323929.3:c.2119A>T	p.Arg707Ter	p.R707*	ENST00000323929	NM_005591.3	707	Aga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	362	375	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88423603	88423603	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	210	438	0	ENST00000360948.2:c.2232C>A	p.Tyr744Ter	p.Y744*	ENST00000360948	NM_001012338.2	744	taC/taA																																																																														
PLCG2	0	MSKCC	GRCh37	16	81927370	81927370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	646	624	0	ENST00000359376.3:c.1043G>T	p.Cys348Phe	p.C348F	ENST00000359376	NM_002661.3	348	tGc/tTc																																																																														
STK11	0	MSKCC	GRCh37	19	1221338	1221627	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGGGAGCCTCATCCCTCTGCCCGCAGCCCCAGGGAGGCGGGGCTTTTGTGCAGAAATGTAGGGTTGGGGGTGTCAGGTGGGGGGCTATTGGCCCCGAGACCCCAGCAGGCATTGAGAGGACTGAGTGGAGAGGCCGACCTCCCCGCAGGGCCTGGTTTGCCAGGTCCCTCAGCTCCACCCTGCTTCTGGGCCCTGTTCACCCTCCGAACTCCCACCCCAGAGGGCAGTGCTGCCCTGCGCCTCCCCCAGCCCCACCCTCGGGGGCTCCCTGGCTTGCAGGGTCTGTC	AGGTGGGAGCCTCATCCCTCTGCCCGCAGCCCCAGGGAGGCGGGGCTTTTGTGCAGAAATGTAGGGTTGGGGGTGTCAGGTGGGGGGCTATTGGCCCCGAGACCCCAGCAGGCATTGAGAGGACTGAGTGGAGAGGCCGACCTCCCCGCAGGGCCTGGTTTGCCAGGTCCCTCAGCTCCACCCTGCTTCTGGGCCCTGTTCACCCTCCGAACTCCCACCCCAGAGGGCAGTGCTGCCCTGCGCCTCCCCCAGCCCCACCCTCGGGGGCTCCCTGGCTTGCAGGGTCTGTC	-			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	465	510	0	ENST00000326873.7:c.862+2_862+291del		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																															
DOT1L	0	MSKCC	GRCh37	19	2185863	2185891	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAGAAATCCCGGATCTCAAGCTCGCTA	TGAAGAAATCCCGGATCTCAAGCTCGCTA	-			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	451	628	0	ENST00000398665.3:c.137_165del	p.Glu46GlyfsTer7	p.E46Gfs*7	ENST00000398665	NM_032482.2	45	tgTGAAGAAATCCCGGATCTCAAGCTCGCTAtg/tgtg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600395	10600395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	798	728	0	ENST00000171111.5:c.1460C>G	p.Ala487Gly	p.A487G	ENST00000171111	NM_203500.1	487	gCt/gGt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306776	41306776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	147	303	0	ENST00000373198.4:c.883C>A	p.Pro295Thr	p.P295T	ENST00000373198	NM_133170.3	295	Cca/Aca																																																																														
EPHA5	0	MSKCC	GRCh37	4	66231763	66231763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	94	340	0	ENST00000273854.3:c.1937G>T	p.Gly646Val	p.G646V	ENST00000273854	NM_004439.5	646	gGa/gTa																																																																														
FGFR1	0	MSKCC	GRCh37	8	38279390	38279390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	342	628	0	ENST00000425967.3:c.1099G>C	p.Ala367Pro	p.A367P	ENST00000425967	NM_001174067.1	367	Gca/Cca																																																																														
PREX2	0	MSKCC	GRCh37	8	69039645	69039645	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	275	374	0	ENST00000288368.4:c.3757G>T	p.Glu1253Ter	p.E1253*	ENST00000288368	NM_024870.2	1253	Gaa/Taa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8319833	8319833	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	126	280	0	ENST00000356435.5:c.5668G>T	p.Glu1890Ter	p.E1890*	ENST00000356435		1890	Gag/Tag																																																																														
TSC1	0	MSKCC	GRCh37	9	135787713	135787713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	475	504	0	ENST00000298552.3:c.869C>T	p.Ala290Val	p.A290V	ENST00000298552	NM_001162426.1	290	gCc/gTc																																																																														
STAG2	0	MSKCC	GRCh37	X	123185069	123185069	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	204	493	0	ENST00000218089.9:c.1116G>T	p.Lys372Asn	p.K372N	ENST00000218089	NM_001042749.1	372	aaG/aaT																																																																														
TP53	0	MSKCC	GRCh37	17	7578258	7578259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	41	654	1	ENST00000269305.4:c.590dup	p.Glu198GlyfsTer11	p.E198Gfs*11	ENST00000269305	NM_001126112.2	197	gtg/gtTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63410675	63410675	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	23	405	0	ENST00000330258.3:c.2492A>T	p.Asp831Val	p.D831V	ENST00000330258	NM_152424.3	831	gAt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577541	7577541	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	430	532	1	ENST00000269305.4:c.740A>T	p.Asn247Ile	p.N247I	ENST00000269305	NM_001126112.2	247	aAc/aTc																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2489817	2489817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	449	616	5	ENST00000355716.4:c.214G>T	p.Gly72Cys	p.G72C	ENST00000355716	NM_003820.2	72	Ggc/Tgc																																																																														
RB1	0	MSKCC	GRCh37	13	48916850	48916850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0028017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	249	323	1	ENST00000267163.4:c.380G>C	p.Ser127Thr	p.S127T	ENST00000267163	NM_000321.2	127	aGt/aCt																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675064	40675064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	490	643	3	ENST00000249776.8:c.28G>T	p.Asp10Tyr	p.D10Y	ENST00000249776	NM_033286.3	10	Gac/Tac																																																																														
BARD1	0	MSKCC	GRCh37	2	215593423	215593423	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	135	252	0	ENST00000260947.4:c.2311G>T	p.Glu771Ter	p.E771*	ENST00000260947	NM_000465.2	771	Gag/Tag																																																																														
TEK	0	MSKCC	GRCh37	9	27213483	27213483	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0028017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	244	402	1	ENST00000380036.4:c.2879T>A	p.Phe960Tyr	p.F960Y	ENST00000380036	NM_000459.3	960	tTt/tAt																																																																														
ATRX	0	MSKCC	GRCh37	X	76845348	76845348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	357	379	0	ENST00000373344.5:c.6173G>T	p.Ser2058Ile	p.S2058I	ENST00000373344	NM_000489.3	2058	aGt/aTt																																																																														
ATRX	0	MSKCC	GRCh37	X	76937643	76937643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	249	365	2	ENST00000373344.5:c.3105T>G	p.Ile1035Met	p.I1035M	ENST00000373344	NM_000489.3	1035	atT/atG																																																																														
PLCG2	0	MSKCC	GRCh37	16	81819655	81819655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	112	652	1	ENST00000359376.3:c.61G>A	p.Ala21Thr	p.A21T	ENST00000359376	NM_002661.3	21	Gcc/Acc																																																																														
BAP1	0	MSKCC	GRCh37	3	52442069	52442069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	118	551	0	ENST00000460680.1:c.280C>G	p.His94Asp	p.H94D	ENST00000460680	NM_004656.3	94	Cat/Gat																																																																														
SETD2	0	MSKCC	GRCh37	3	47165690	47165690	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	78	443	0	ENST00000409792.3:c.436A>T	p.Lys146Ter	p.K146*	ENST00000409792	NM_014159.6	146	Aaa/Taa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52621392	52621392	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	114	515	0	ENST00000394830.3:c.3025A>T	p.Lys1009Ter	p.K1009*	ENST00000394830	NM_018313.4	1009	Aag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	99	549	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0028448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	106	342	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0028448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	64	372	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0028671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	32	389	0				ENST00000310581	NM_198253.2																																																																																
CASP8	841	MSKCC	GRCh37	2	202137360	202137360	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0028671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	35	279	0	ENST00000358485.4:c.589-1G>A		p.X197_splice	ENST00000358485	NM_001080125.1	197																																																																															
ARID2	0	MSKCC	GRCh37	12	46230604	46230604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	26	340	2	ENST00000334344.6:c.853C>T	p.Arg285Trp	p.R285W	ENST00000334344	NM_152641.2	285	Cgg/Tgg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120491126	120491126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	40	469	0	ENST00000256646.2:c.2663G>T	p.Cys888Phe	p.C888F	ENST00000256646	NM_024408.3	888	tGc/tTc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850628	63850628	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0028671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	18	240	0	ENST00000279873.7:c.1406C>G	p.Ser469Ter	p.S469*	ENST00000279873	NM_032199.2	469	tCa/tGa																																																																														
ARID2	0	MSKCC	GRCh37	12	46287244	46287244	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	36	378	0	ENST00000334344.6:c.5192del	p.Lys1731ArgfsTer4	p.K1731Rfs*4	ENST00000334344	NM_152641.2	1730	cAa/ca																																																																														
CD276	0	MSKCC	GRCh37	15	73994791	73994791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	50	564	0	ENST00000318443.5:c.275G>A	p.Arg92His	p.R92H	ENST00000318443	NM_001024736.1	92	cGc/cAc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36217200	36217200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	139	789	0	ENST00000222270.7:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000222270	NM_014727.1	1317	Gag/Tag																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138199809	138199809	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	42	480	0	ENST00000237289.4:c.1227G>C	p.Glu409Asp	p.E409D	ENST00000237289	NM_001270507.1	409	gaG/gaC																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395008	139395008	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	40	388	0	ENST00000277541.6:c.5930del	p.Phe1977SerfsTer4	p.F1977Sfs*4	ENST00000277541	NM_017617.3	1977	tTc/tc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	219	699	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	56	623	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
CCND3	0	MSKCC	GRCh37	6	41909235	41909235	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	58	648	0	ENST00000372991.4:c.153G>C	p.Glu51Asp	p.E51D	ENST00000372991	NM_001760.3	51	gaG/gaC																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031030-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			32	216	260	0	ENST00000342988.3:c.1487G>C	p.Arg496Pro	p.R496P	ENST00000342988	NM_005359.5	496	cGt/cCt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106178	27106178	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031030-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			57	396	524	0	ENST00000324856.7:c.5789C>A	p.Ser1930Ter	p.S1930*	ENST00000324856	NM_006015.4	1930	tCa/tAa																																																																														
JUN	0	MSKCC	GRCh37	1	59248245	59248245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031030-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			19	18	25	0	ENST00000371222.2:c.498G>C	p.Glu166Asp	p.E166D	ENST00000371222	NM_002228.3	166	gaG/gaC																																																																														
TP53	0	MSKCC	GRCh37	17	7577064	7577065	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0031030-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	433	664	0	ENST00000269305.4:c.873_874del	p.Lys292ArgfsTer13	p.K292Rfs*13	ENST00000269305	NM_001126112.2	291	aaGAaa/aaaa																																																																														
ATRX	0	MSKCC	GRCh37	X	76939769	76939769	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031030-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	303	422	0	ENST00000373344.5:c.979G>T	p.Glu327Ter	p.E327*	ENST00000373344	NM_000489.3	327	Gaa/Taa																																																																														
GLI1	0	MSKCC	GRCh37	12	57863356	57863356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031030-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	437	637	0	ENST00000228682.2:c.1451G>A	p.Gly484Glu	p.G484E	ENST00000228682	NM_005269.2	484	gGa/gAa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226490	2226490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031030-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			97	519	800	2	ENST00000398665.3:c.3970G>A	p.Ala1324Thr	p.A1324T	ENST00000398665	NM_032482.2	1324	Gcg/Acg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5218809	5218809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0031030-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			56	330	516	0	ENST00000357368.4:c.3924C>G	p.Asn1308Lys	p.N1308K	ENST00000357368	NM_002850.3	1308	aaC/aaG																																																																														
AGO2	0	MSKCC	GRCh37	8	141570518	141570518	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031030-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1547	224	587	0	ENST00000220592.5:c.610C>T	p.Gln204Ter	p.Q204*	ENST00000220592	NM_012154.3	204	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	368	114	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	164	512	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938577	44938577	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	142	274	0	ENST00000377967.4:c.3125C>G	p.Ser1042Ter	p.S1042*	ENST00000377967	NM_021140.2	1042	tCa/tGa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8319902	8319902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	76	401	0	ENST00000356435.5:c.5599G>A	p.Glu1867Lys	p.E1867K	ENST00000356435		1867	Gaa/Aaa																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52714556	52714556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	498	508	0	ENST00000322088.6:c.314G>A	p.Arg105Gln	p.R105Q	ENST00000322088	NM_014225.5	105	cGg/cAg																																																																														
CDH1	0	MSKCC	GRCh37	16	68847225	68847225	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	340	380	1	ENST00000261769.5:c.1147C>T	p.Gln383Ter	p.Q383*	ENST00000261769	NM_004360.3	383	Cag/Tag																																																																														
RB1	0	MSKCC	GRCh37	13	49039464	49039464	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	90	521	1	ENST00000267163.4:c.2449G>T	p.Glu817Ter	p.E817*	ENST00000267163	NM_000321.2	817	Gaa/Taa																																																																														
SRC	0	MSKCC	GRCh37	20	36012689	36012689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	66	24	0	ENST00000358208.4:c.133G>A	p.Asp45Asn	p.D45N	ENST00000358208		45	Gac/Aac																																																																														
SPEN	0	MSKCC	GRCh37	1	16258616	16258616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	117	408	1	ENST00000375759.3:c.5881G>A	p.Asp1961Asn	p.D1961N	ENST00000375759	NM_015001.2	1961	Gat/Aat																																																																														
BCL10	0	MSKCC	GRCh37	1	85736590	85736590	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0031266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	51	206	0	ENST00000370580.1:c.58-1G>A		p.X20_splice	ENST00000370580	NM_003921.4	20																																																																															
IGF1R	0	MSKCC	GRCh37	15	99486250	99486250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	295	551	0	ENST00000268035.6:c.3556G>A	p.Asp1186Asn	p.D1186N	ENST00000268035	NM_000875.3	1186	Gat/Aat																																																																														
CDH1	0	MSKCC	GRCh37	16	68845689	68845689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	498	555	1	ENST00000261769.5:c.935C>A	p.Pro312His	p.P312H	ENST00000261769	NM_004360.3	312	cCt/cAt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	52	622	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508860	106508860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	49	649	1	ENST00000359195.3:c.854C>T	p.Thr285Met	p.T285M	ENST00000359195	NM_002649.2	285	aCg/aTg																																																																														
DIS3	0	MSKCC	GRCh37	13	73349488	73349488	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0031270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	50	550	0	ENST00000377767.4:c.848T>G	p.Leu283Ter	p.L283*	ENST00000377767	NM_014953.3	283	tTa/tGa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060751	38060756	+	inframe_deletion	In_Frame_Del	DEL	TGCTGC	TGCTGC	-			P-0031270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	394	1138	0	ENST00000250448.2:c.1233_1238del	p.Gln411_Gln412del	p.Q411_Q412del	ENST00000250448	NM_004496.3	411	caGCAGCAt/cat																																																																														
RTEL1	0	MSKCC	GRCh37	20	62324185	62324185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	66	948	1	ENST00000508582.2:c.2752G>A	p.Asp918Asn	p.D918N	ENST00000508582		918	Gac/Aac																																																																														
ERG	0	MSKCC	GRCh37	21	39817460	39817460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	215	674	0	ENST00000288319.7:c.103G>T	p.Ala35Ser	p.A35S	ENST00000288319	NM_182918.3	35	Gcg/Tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	263	595	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	82	354	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852060	63852060	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	32	557	0	ENST00000279873.7:c.2838G>C	p.Gln946His	p.Q946H	ENST00000279873	NM_032199.2	946	caG/caC																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060925	38060925	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	35	338	0	ENST00000250448.2:c.1064C>G	p.Ser355Ter	p.S355*	ENST00000250448	NM_004496.3	355	tCa/tGa																																																																														
TSHR	0	MSKCC	GRCh37	14	81534654	81534654	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	101	453	0	ENST00000298171.2:c.299T>A	p.Leu100Ter	p.L100*	ENST00000298171	NM_000369.2	100	tTg/tAg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470572	25470572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	121	734	0	ENST00000264709.3:c.902G>A	p.Arg301Gln	p.R301Q	ENST00000264709	NM_175629.2	301	cGg/cAg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41076860	41076860	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	86	390	0	ENST00000373198.4:c.1560G>T	p.Glu520Asp	p.E520D	ENST00000373198	NM_133170.3	520	gaG/gaT																																																																														
SHQ1	0	MSKCC	GRCh37	3	72799975	72799975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	127	289	0	ENST00000325599.8:c.1194G>T	p.Leu398Phe	p.L398F	ENST00000325599	NM_018130.2	398	ttG/ttT																																																																														
INPP4B	0	MSKCC	GRCh37	4	143226656	143226656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	67	407	0	ENST00000262992.4:c.458G>A	p.Gly153Glu	p.G153E	ENST00000262992	NM_001101669.1	153	gGa/gAa																																																																														
FAT1	0	MSKCC	GRCh37	4	187517741	187517741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	46	200	0	ENST00000441802.2:c.12953C>T	p.Ser4318Phe	p.S4318F	ENST00000441802	NM_005245.3	4318	tCt/tTt																																																																														
TAP1	0	MSKCC	GRCh37	6	32814973	32814973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	41	486	0	ENST00000354258.4:c.2092G>A	p.Glu698Lys	p.E698K	ENST00000354258	NM_000593.5	698	Gag/Aag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	132	447	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	147	638	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52597433	52597433	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	87	486	0	ENST00000394830.3:c.3877G>T	p.Glu1293Ter	p.E1293*	ENST00000394830	NM_018313.4	1293	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	113	493	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
DICER1	0	MSKCC	GRCh37	14	95570018	95570018	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	54	631	0	ENST00000343455.3:c.3715A>T	p.Ser1239Cys	p.S1239C	ENST00000343455	NM_177438.2	1239	Agt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578436	7578439	+	frameshift_variant	Frame_Shift_Del	DEL	TGCT	TGCT	-			P-0031323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	123	813	0	ENST00000269305.4:c.491_494delAGCA	p.Lys164SerfsTer5	p.K164Sfs*5	ENST00000269305	NM_001126112.2	164	aAGCAg/ag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	1747	561	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	494	712	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720801	89720802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	65	225	0	ENST00000371953.3:c.954dup	p.Thr319TyrfsTer6	p.T319Yfs*6	ENST00000371953	NM_000314.4	318	ctt/cTtt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80537256	80537263	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	CTGTCCCT	CTGTCCCT	-			P-0031324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	188	631	0	ENST00000286548.4:c.137-2_142del		p.X46_splice	ENST00000286548	NM_002072.3	46																																																																															
TP53	0	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	85	606	0	ENST00000269305.4:c.751A>C	p.Ile251Leu	p.I251L	ENST00000269305	NM_001126112.2	251	Atc/Ctc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81927400	81927400	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	189	591	1	ENST00000359376.3:c.1072+1G>A		p.X358_splice	ENST00000359376	NM_002661.3	358																																																																															
PBRM1	0	MSKCC	GRCh37	3	52662984	52662984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	47	520	0	ENST00000394830.3:c.1369G>C	p.Glu457Gln	p.E457Q	ENST00000394830	NM_018313.4	457	Gaa/Caa																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138197138	138197138	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	56	343	0	ENST00000237289.4:c.640A>T	p.Met214Leu	p.M214L	ENST00000237289	NM_001270507.1	214	Atg/Ttg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	66	549	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577061	7577070	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTCTTGCG	CTTTCTTGCG	-			P-0031327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	89	824	0	ENST00000269305.4:c.868_877del	p.Arg290GlyfsTer52	p.R290Gfs*52	ENST00000269305	NM_001126112.2	290	CGCAAGAAAGgg/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	105	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7576924	7576925	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0031328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	104	613	0	ENST00000269305.4:c.921dup	p.Leu308ThrfsTer29	p.L308Tfs*29	ENST00000269305	NM_001126112.2	307	-/A																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584546	48584546	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	78	469	0	ENST00000342988.3:c.719T>A	p.Ile240Lys	p.I240K	ENST00000342988	NM_005359.5	240	aTa/aAa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584813	48584814	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	57	366	0	ENST00000342988.3:c.891_892insA	p.Pro298ThrfsTer10	p.P298Tfs*10	ENST00000342988	NM_005359.5	297	-/A																																																																														
ROS1	0	MSKCC	GRCh37	6	117710735	117710735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	60	453	0	ENST00000368508.3:c.1537G>T	p.Asp513Tyr	p.D513Y	ENST00000368508	NM_002944.2	513	Gat/Tat																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845753	151845753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	90	639	0	ENST00000262189.6:c.13259T>C	p.Leu4420Pro	p.L4420P	ENST00000262189	NM_170606.2	4420	cTc/cCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0031350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	174	692	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	160	480	1	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
DROSHA	0	MSKCC	GRCh37	5	31493360	31493360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	79	472	0	ENST00000344624.3:c.1796A>T	p.Tyr599Phe	p.Y599F	ENST00000344624		599	tAt/tTt																																																																														
PAX5	0	MSKCC	GRCh37	9	36882084	36882084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	70	711	0	ENST00000358127.4:c.929C>T	p.Thr310Met	p.T310M	ENST00000358127	NM_001280556.1	310	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	205	690	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741577	17741577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	89	369	1	ENST00000250003.3:c.248C>T	p.Ala83Val	p.A83V	ENST00000250003	NM_002478.4	83	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0031360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	159	318	1	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
EP300	0	MSKCC	GRCh37	22	41574323	41574323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	84	737	1	ENST00000263253.7:c.6608C>T	p.Pro2203Leu	p.P2203L	ENST00000263253	NM_001429.3	2203	cCt/cTt																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519388	137519388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	72	322	0	ENST00000367739.4:c.1250G>A	p.Ser417Asn	p.S417N	ENST00000367739	NM_000416.2	417	aGc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	13	478	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	25	704	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
MTOR	0	MSKCC	GRCh37	1	11316107	11316108	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	67	600	1	ENST00000361445.4:c.646dup	p.Cys216LeufsTer9	p.C216Lfs*9	ENST00000361445	NM_004958.3	216	tgt/tTgt																																																																														
PGR	0	MSKCC	GRCh37	11	100996800	100996800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	105	650	0	ENST00000325455.5:c.1727G>T	p.Gly576Val	p.G576V	ENST00000325455	NM_001202474.3	576	gGc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	75	584	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112127	115112127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	85	693	0	ENST00000257566.3:c.1613G>T	p.Gly538Val	p.G538V	ENST00000257566	NM_016569.3	538	gGc/gTc																																																																														
POLE	0	MSKCC	GRCh37	12	133254209	133254209	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	42	583	0	ENST00000320574.5:c.675T>A	p.Asp225Glu	p.D225E	ENST00000320574	NM_006231.2	225	gaT/gaA																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748404	43748404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	57	813	0	ENST00000382044.4:c.2402C>T	p.Pro801Leu	p.P801L	ENST00000382044	NM_001141980.1	801	cCa/cTa																																																																														
GATA2	0	MSKCC	GRCh37	3	128199918	128199918	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	41	469	0	ENST00000341105.2:c.1387T>A	p.Ser463Thr	p.S463T	ENST00000341105	NM_032638.4	463	Tcc/Acc																																																																														
MDC1	0	MSKCC	GRCh37	6	30679762	30679762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	61	599	0	ENST00000376406.3:c.1957G>A	p.Asp653Asn	p.D653N	ENST00000376406	NM_014641.2	653	Gac/Aac																																																																														
EGFR	0	MSKCC	GRCh37	7	55242488	55242488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	76	595	0	ENST00000275493.2:c.2258C>A	p.Pro753Gln	p.P753Q	ENST00000275493	NM_005228.3	753	cCg/cAg																																																																														
JAK2	0	MSKCC	GRCh37	9	5064952	5064952	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	61	500	0	ENST00000381652.3:c.1126A>T	p.Thr376Ser	p.T376S	ENST00000381652	NM_004972.3	376	Act/Tct																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499745	8499745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	59	558	0	ENST00000356435.5:c.2224G>T	p.Gly742Cys	p.G742C	ENST00000356435		742	Ggc/Tgc																																																																														
AMER1	0	MSKCC	GRCh37	X	63409993	63409994	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0031373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	22	539	1	ENST00000330258.3:c.3173_3174delinsAA	p.Pro1058Gln	p.P1058Q	ENST00000330258	NM_152424.3	1058	cCC/cAA																																																																														
BAP1	0	MSKCC	GRCh37	3	52436624	52436624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	544	638	0	ENST00000460680.1:c.2050C>T	p.Gln684Ter	p.Q684*	ENST00000460680	NM_004656.3	684	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89720741	89720741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	32	219	0	ENST00000371953.3:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000371953	NM_000314.4	298	Caa/Taa																																																																														
BAP1	0	MSKCC	GRCh37	3	52441996	52441997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGTCC			P-0031375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	205	535	3	ENST00000460680.1:c.348_352dup	p.Phe118TrpfsTer71	p.F118Wfs*71	ENST00000460680	NM_004656.3	118	ttc/tGGACTtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	282	482	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	291	745	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15296323	15296323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	239	761	3	ENST00000263388.2:c.2119G>A	p.Gly707Ser	p.G707S	ENST00000263388	NM_000435.2	707	Ggc/Agc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143029273	143029273	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	103	360	0	ENST00000262992.4:c.2347A>T	p.Ile783Leu	p.I783L	ENST00000262992	NM_001101669.1	783	Ata/Tta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0031382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	26	529	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	14	530	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	44	636	1	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106383	27106384	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	370	624	0	ENST00000324856.7:c.5997dup	p.Glu2000Ter	p.E2000*	ENST00000324856	NM_006015.4	1998	-/T																																																																														
MDC1	0	MSKCC	GRCh37	6	30673025	30673025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	502	832	0	ENST00000376406.3:c.3935G>A	p.Ser1312Asn	p.S1312N	ENST00000376406	NM_014641.2	1312	aGc/aAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0031385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	141	536	3	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99454561	99454561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	118	501	0	ENST00000268035.6:c.1480C>G	p.His494Asp	p.H494D	ENST00000268035	NM_000875.3	494	Cat/Gat																																																																														
PIM1	0	MSKCC	GRCh37	6	37139112	37139140	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTGGAGGCCGTGCGGCACTGCCACAAC	TGCTGGAGGCCGTGCGGCACTGCCACAAC	-			P-0031385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	76	513	0	ENST00000373509.5:c.455_483del	p.Leu152ArgfsTer47	p.L152Rfs*47	ENST00000373509	NM_002648.3	151	gTGCTGGAGGCCGTGCGGCACTGCCACAAC/g																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	158	557	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	16	414	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																														
CDK12	0	MSKCC	GRCh37	17	37649111	37649111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	60	413	0	ENST00000447079.4:c.2216G>A	p.Gly739Asp	p.G739D	ENST00000447079	NM_015083.1	739	gGc/gAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55259441	55259442	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0031386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	120	420	1	ENST00000275493.2:c.2499_2500delinsTT	p.Leu833_Val834delinsPheLeu	p.L833_V834delinsFL	ENST00000275493	NM_005228.3	833	ttGGtg/ttTTtg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061235	38061235	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	285	602	0	ENST00000250448.2:c.754A>C	p.Asn252His	p.N252H	ENST00000250448	NM_004496.3	252	Aac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	66	688	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	220	515	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593478	48593479	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	43	397	0	ENST00000342988.3:c.1231_1232del	p.Ser411LeufsTer17	p.S411Lfs*17	ENST00000342988	NM_005359.5	410	cAG/c																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445404	49445404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	112	872	1	ENST00000301067.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000301067	NM_003482.3	688	Cgc/Tgc																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67201881	67201881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146762475		P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	73	652	0	ENST00000312629.5:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000312629	NM_003952.2	361	Cgc/Tgc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845153	151845154	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	49	534	0	ENST00000262189.6:c.13858dup	p.His4620ProfsTer2	p.H4620Pfs*2	ENST00000262189	NM_170606.2	4620	cat/cCat																																																																														
RBM10	0	MSKCC	GRCh37	X	47039824	47039824	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	88	703	0	ENST00000329236.7:c.934del	p.Ala312ProfsTer95	p.A312Pfs*95	ENST00000329236	NM_001204466.1	311	atG/at																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	458	617	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50479187	50479187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	256	445	0	ENST00000394963.4:c.35C>A	p.Pro12Gln	p.P12Q	ENST00000394963	NM_003076.4	12	cCa/cAa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832585	72832585	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	76	254	0	ENST00000268489.5:c.3996C>G	p.Ile1332Met	p.I1332M	ENST00000268489	NM_006885.3	1332	atC/atG																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794841	242794841	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	242	542	0	ENST00000334409.5:c.368G>C	p.Cys123Ser	p.C123S	ENST00000334409	NM_005018.2	123	tGt/tCt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41420021	41420049	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGTCATTCTCCTTCAGGGTTGGCAGGA	GGTGTCATTCTCCTTCAGGGTTGGCAGGA	-			P-0031402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	105	405	0	ENST00000373198.4:c.272_300del	p.Leu91ProfsTer13	p.L91Pfs*13	ENST00000373198	NM_133170.3	91	cTCCTGCCAACCCTGAAGGAGAATGACACC/c																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921354	178921354	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	549	559	0	ENST00000263967.3:c.836T>A	p.Leu279His	p.L279H	ENST00000263967	NM_006218.2	279	cTt/cAt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55130026	55130026	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	170	604	0	ENST00000257290.5:c.560A>G	p.Tyr187Cys	p.Y187C	ENST00000257290	NM_006206.4	187	tAt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	22	470	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579442	7579442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	37	713	0	ENST00000269305.4:c.245del	p.Pro82ArgfsTer41	p.P82Rfs*41	ENST00000269305	NM_001126112.2	82	cCg/cg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891173	101891173	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	31	351	0	ENST00000374994.4:c.134A>T	p.Asn45Ile	p.N45I	ENST00000374994	NM_004612.2	45	aAt/aTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0031406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	310	560	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TP53	0	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	331	912	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156603	55156603	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200676118		P-0031407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	175	619	1	ENST00000257290.5:c.3004G>T	p.Asp1002Tyr	p.D1002Y	ENST00000257290	NM_006206.4	1002	Gac/Tac																																																																														
KDR	0	MSKCC	GRCh37	4	55964316	55964316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	51	468	0	ENST00000263923.4:c.2497C>T	p.Arg833Trp	p.R833W	ENST00000263923	NM_002253.2	833	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112173627	112173627	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0031407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	73	410	0	ENST00000257430.4:c.2336T>G	p.Leu779Ter	p.L779*	ENST00000257430	NM_000038.5	779	tTa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	167	499	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0031409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	101	384	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	61	425	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11107030	11107030	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	92	473	0	ENST00000344626.4:c.1735G>T	p.Glu579Ter	p.E579*	ENST00000344626	NM_003072.3	579	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0031410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	345	710	0	ENST00000269305.4:c.489C>G	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taG																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348536	89348536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	31	785	0	ENST00000301030.4:c.4414G>A	p.Glu1472Lys	p.E1472K	ENST00000301030	NM_001256183.1	1472	Gag/Aag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508482	106508482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	53	272	0	ENST00000359195.3:c.476G>T	p.Gly159Val	p.G159V	ENST00000359195	NM_002649.2	159	gGc/gTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0031412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	242	327	0	ENST00000371953.3:c.635-1G>C		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
BAP1	0	MSKCC	GRCh37	3	52440844	52440844	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0031412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	253	499	0	ENST00000460680.1:c.659+1G>T		p.X220_splice	ENST00000460680	NM_004656.3	220																																																																															
VEGFA	0	MSKCC	GRCh37	6	43745252	43745311	+	inframe_deletion	In_Frame_Del	DEL	CGAGACCCTGGTGGACATCTTCCAGGAGTACCCTGATGAGATCGAGTACATCTTCAAGCC	CGAGACCCTGGTGGACATCTTCCAGGAGTACCCTGATGAGATCGAGTACATCTTCAAGCC	-			P-0031412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	255	579	0	ENST00000523873.1:c.165_224del	p.Glu56_Pro75del	p.E56_P75del	ENST00000523873		55	atCGAGACCCTGGTGGACATCTTCCAGGAGTACCCTGATGAGATCGAGTACATCTTCAAGCCa/ata																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0031413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	227	454	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	301	625	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732907	74732908	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	97	221	0	ENST00000359995.5:c.335dup	p.Gly113ArgfsTer11	p.G113Rfs*11	ENST00000359995	NM_001195427.1	112	ggc/ggGc																																																																														
PMS1	0	MSKCC	GRCh37	2	190728602	190728602	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	121	575	0	ENST00000441310.2:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000441310	NM_000534.4	664	Cag/Tag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467919	66467919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	65	328	0	ENST00000273854.3:c.350G>T	p.Trp117Leu	p.W117L	ENST00000273854	NM_004439.5	117	tGg/tTg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0031417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	280	714	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	230	737	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	79	485	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12011200	12011200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	69	394	0	ENST00000353533.5:c.607G>T	p.Glu203Ter	p.E203*	ENST00000353533	NM_003010.3	203	Gaa/Taa																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805684	46805713	+	inframe_deletion	In_Frame_Del	DEL	CGGCAGGAGTAGTACCCGCCTCCAAAGTAA	CGGCAGGAGTAGTACCCGCCTCCAAAGTAA	-			P-0031419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	425	866	0	ENST00000290295.7:c.243_272del	p.Tyr82_Arg91del	p.Y82_R91del	ENST00000290295	NM_006361.5	81	ggTTACTTTGGAGGCGGGTACTACTCCTGCCGa/gga																																																																														
SETD2	0	MSKCC	GRCh37	3	47165153	47165153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	197	358	0	ENST00000409792.3:c.973G>A	p.Glu325Lys	p.E325K	ENST00000409792	NM_014159.6	325	Gaa/Aaa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89445082	89445082	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	295	536	0	ENST00000336596.2:c.1402T>A	p.Leu468Met	p.L468M	ENST00000336596	NM_005233.5	468	Ttg/Atg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467759	50467759	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	51	689	0	ENST00000331340.3:c.994C>T	p.Gln332Ter	p.Q332*	ENST00000331340	NM_006060.4	332	Cag/Tag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5231375	5231375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	82	738	0	ENST00000357368.4:c.2101G>C	p.Glu701Gln	p.E701Q	ENST00000357368	NM_002850.3	701	Gag/Cag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351737	89351737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	276	921	0	ENST00000301030.4:c.1213C>T	p.Arg405Cys	p.R405C	ENST00000301030	NM_001256183.1	405	Cgt/Tgt																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	51	473	0	ENST00000244661.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000244661	NM_003537.3	74	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7579503	7579503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	195	899	0	ENST00000269305.4:c.184G>T	p.Glu62Ter	p.E62*	ENST00000269305	NM_001126112.2	62	Gaa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101393	27101393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	138	501	2	ENST00000324856.7:c.4675G>T	p.Ala1559Ser	p.A1559S	ENST00000324856	NM_006015.4	1559	Gcc/Tcc																																																																														
PGR	0	MSKCC	GRCh37	11	100909912	100909912	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	54	446	0	ENST00000325455.5:c.2737A>T	p.Ile913Phe	p.I913F	ENST00000325455	NM_001202474.3	913	Att/Ttt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118392030	118392030	+	splice_acceptor_variant,non_coding_transcript_variant	Splice_Site	SNP	C	C	A			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	221	504	0	ENST00000554407.1:n.273-1G>T		p.X91_splice	ENST00000554407		91																																																																															
CBL	0	MSKCC	GRCh37	11	119156016	119156016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	91	783	0	ENST00000264033.4:c.1681C>G	p.Gln561Glu	p.Q561E	ENST00000264033	NM_005188.3	561	Caa/Gaa																																																																														
ETV6	0	MSKCC	GRCh37	12	12006442	12006442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	88	769	1	ENST00000396373.4:c.410G>C	p.Gly137Ala	p.G137A	ENST00000396373	NM_001987.4	137	gGa/gCa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443745	49443745	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	121	835	0	ENST00000301067.7:c.3626C>G	p.Ser1209Cys	p.S1209C	ENST00000301067	NM_003482.3	1209	tCt/tGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913983	32913983	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	146	613	0	ENST00000380152.3:c.5491A>C	p.Ile1831Leu	p.I1831L	ENST00000380152		1831	Ata/Cta																																																																														
JAK3	0	MSKCC	GRCh37	19	17955223	17955223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	205	860	0	ENST00000458235.1:c.4del	p.Ala2HisfsTer9	p.A2Hfs*9	ENST00000458235	NM_000215.3	2	Gca/ca																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	93	381	0	ENST00000397062.3:c.92G>T	p.Gly31Val	p.G31V	ENST00000397062	NM_006164.4	31	gGa/gTa																																																																														
MDC1	0	MSKCC	GRCh37	6	30682855	30682855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	82	632	2	ENST00000376406.3:c.98G>T	p.Arg33Leu	p.R33L	ENST00000376406	NM_014641.2	33	cGg/cTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971060	21971071	+	inframe_deletion	In_Frame_Del	DEL	CCCGGTGCAGCA	CCCGGTGCAGCA	-			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	158	500	0	ENST00000304494.5:c.287_298del	p.Val96_Arg99del	p.V96_R99del	ENST00000304494	NM_000077.4	96	gTGCTGCACCGGGcc/gcc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971060	21971071	+	inframe_deletion	In_Frame_Del	DEL	CCCGGTGCAGCA	CCCGGTGCAGCA	-			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	158	500	0	ENST00000304494.5:c.287_298del	p.Val96_Arg99del	p.V96_R99del	ENST00000304494	NM_000077.4	96	gTGCTGCACCGGGcc/gcc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971060	21971071	+	inframe_deletion	In_Frame_Del	DEL	CCCGGTGCAGCA	CCCGGTGCAGCA	-			P-0031424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	158	500	0	ENST00000304494.5:c.287_298del	p.Val96_Arg99del	p.V96_R99del	ENST00000304494	NM_000077.4	96	gTGCTGCACCGGGcc/gcc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0031426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	40	337	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
BRAF	0	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	416	528	0	ENST00000288602.6:c.1405G>C	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Cga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153271198	153271198	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs202191840		P-0031426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	107	265	15	ENST00000281708.4:c.580A>G	p.Thr194Ala	p.T194A	ENST00000281708	NM_033632.3	194	Aca/Gca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151836758	151836758	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0031426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	332	476	0	ENST00000262189.6:c.14460+2T>G		p.X4820_splice	ENST00000262189	NM_170606.2	4820																																																																															
GRIN2A	0	MSKCC	GRCh37	16	10032264	10032264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	13	444	0	ENST00000330684.3:c.559G>A	p.Val187Ile	p.V187I	ENST00000330684	NM_001134407.1	187	Gtc/Atc																																																																														
SDHB	0	MSKCC	GRCh37	1	17350532	17350532	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	68	470	0	ENST00000375499.3:c.578G>C	p.Ser193Thr	p.S193T	ENST00000375499	NM_003000.2	193	aGc/aCc																																																																														
ARID2	0	MSKCC	GRCh37	12	46245456	46245456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	10	336	0	ENST00000334344.6:c.3550C>A	p.Pro1184Thr	p.P1184T	ENST00000334344	NM_152641.2	1184	Cct/Act																																																																														
VTCN1	0	MSKCC	GRCh37	1	117695830	117695830	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	10	448	0	ENST00000369458.3:c.607T>C	p.Ser203Pro	p.S203P	ENST00000369458	NM_024626.3	203	Tct/Cct																																																																														
ARID2	0	MSKCC	GRCh37	12	46245298	46245298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	17	343	0	ENST00000334344.6:c.3392C>A	p.Pro1131Gln	p.P1131Q	ENST00000334344	NM_152641.2	1131	cCa/cAa																																																																														
ARID2	0	MSKCC	GRCh37	12	46245315	46245315	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	12	338	0	ENST00000334344.6:c.3409T>A	p.Ser1137Thr	p.S1137T	ENST00000334344	NM_152641.2	1137	Tca/Aca																																																																														
ARID2	0	MSKCC	GRCh37	12	46246399	46246399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	10	313	0	ENST00000334344.6:c.4493C>T	p.Ala1498Val	p.A1498V	ENST00000334344	NM_152641.2	1498	gCc/gTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032277	10032277	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	12	433	0	ENST00000330684.3:c.546A>C	p.Glu182Asp	p.E182D	ENST00000330684	NM_001134407.1	182	gaA/gaC																																																																														
NUP93	0	MSKCC	GRCh37	16	56782171	56782171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	11	252	0	ENST00000308159.5:c.12G>T	p.Glu4Asp	p.E4D	ENST00000308159	NM_014669.4	4	gaG/gaT																																																																														
NF1	0	MSKCC	GRCh37	17	29553541	29553541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	13	280	0	ENST00000358273.4:c.2090A>G	p.Asn697Ser	p.N697S	ENST00000358273	NM_001042492.2	697	aAc/aGc																																																																														
CDK12	0	MSKCC	GRCh37	17	37682123	37682123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	11	325	0	ENST00000447079.4:c.3314C>G	p.Ala1105Gly	p.A1105G	ENST00000447079	NM_015083.1	1105	gCt/gGt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52713609	52713609	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	10	363	0	ENST00000394830.3:c.119A>G	p.Asn40Ser	p.N40S	ENST00000394830	NM_018313.4	40	aAt/aGt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38173489	38173489	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	11	419	0	ENST00000317025.8:c.1927A>G	p.Thr643Ala	p.T643A	ENST00000317025	NM_023034.1	643	Act/Gct																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101867495	101867495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	14	42	0	ENST00000374994.4:c.8C>T	p.Ala3Val	p.A3V	ENST00000374994	NM_004612.2	3	gCg/gTg																																																																														
MED12	0	MSKCC	GRCh37	X	70361142	70361142	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	18	245	0	ENST00000374080.3:c.6330A>C	p.Gln2110His	p.Q2110H	ENST00000374080		2110	caA/caC																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	42	500	1	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
MED12	0	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	36	580	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928089	178928089	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	42	471	0	ENST00000263967.3:c.1367T>G	p.Leu456Arg	p.L456R	ENST00000263967	NM_006218.2	456	cTg/cGg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	69	391	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36938248	36938248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	287	630	1	ENST00000361632.4:c.713G>A	p.Ser238Asn	p.S238N	ENST00000361632		238	aGc/aAc																																																																														
NF1	0	MSKCC	GRCh37	17	29664463	29664463	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	283	455	0	ENST00000358273.4:c.6505A>T	p.Lys2169Ter	p.K2169*	ENST00000358273	NM_001042492.2	2169	Aaa/Taa																																																																														
CD79B	0	MSKCC	GRCh37	17	62006656	62006656	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	278	546	0	ENST00000392795.3:c.623A>C	p.Tyr208Ser	p.Y208S	ENST00000392795	NM_001039933.1	208	tAt/tCt																																																																														
ERG	0	MSKCC	GRCh37	21	39817519	39817519	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	74	488	0	ENST00000288319.7:c.44A>G	p.Asp15Gly	p.D15G	ENST00000288319	NM_182918.3	15	gAc/gGc																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271376	26271408	+	inframe_deletion	In_Frame_Del	DEL	GAAGTCCTGAGCGATTTCTCGCACCAGGCGTTG	GAAGTCCTGAGCGATTTCTCGCACCAGGCGTTG	-			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	26	441	0	ENST00000305910.3:c.205_237del	p.Gln69_Phe79del	p.Q69_F79del	ENST00000305910	NM_003534.2	69	CAACGCCTGGTGCGAGAAATCGCTCAGGACTTC/-																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974787	21974788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	51	168	0	ENST00000304494.5:c.39dup	p.Asp14Ter	p.D14*	ENST00000304494	NM_000077.4	13	-/T																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974787	21974788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	51	168	0	ENST00000304494.5:c.39dup	p.Asp14Ter	p.D14*	ENST00000304494	NM_000077.4	13	-/T																																																																														
TEK	0	MSKCC	GRCh37	9	27168596	27168596	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	137	490	0	ENST00000380036.4:c.468C>G	p.Tyr156Ter	p.Y156*	ENST00000380036	NM_000459.3	156	taC/taG																																																																														
BCOR	0	MSKCC	GRCh37	X	39923199	39923199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	83	210	0	ENST00000378444.4:c.3509G>T	p.Trp1170Leu	p.W1170L	ENST00000378444	NM_001123385.1	1170	tGg/tTg																																																																														
ARAF	0	MSKCC	GRCh37	X	47422727	47422727	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0031431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	106	269	0	ENST00000377045.4:c.199G>T	p.Gly67Ter	p.G67*	ENST00000377045	NM_001654.4	67	Gga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	157	393	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	107	520	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	105	479	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	125	436	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711927	89711928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	99	452	0	ENST00000371953.3:c.548dup	p.Asn184GlufsTer6	p.N184Efs*6	ENST00000371953	NM_000314.4	182	tta/ttAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	65	392	0	ENST00000371953.3:c.253+1G>A		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
NRAS	0	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	129	565	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	124	597	15	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
SETD2	0	MSKCC	GRCh37	3	47161939	47161939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	57	338	1	ENST00000409792.3:c.4187del	p.Asn1396MetfsTer16	p.N1396Mfs*16	ENST00000409792	NM_014159.6	1396	aAt/at																																																																														
H3F3C	0	MSKCC	GRCh37	12	31945008	31945008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	39	646	1	ENST00000340398.3:c.93delC	p.Ser32LeufsTer5	p.S32Lfs*5	ENST00000340398	NM_001013699.2	31	ccC/cc																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	136	455	0	ENST00000379607.5:c.38G>A	p.Arg13His	p.R13H	ENST00000379607	NM_001412.3	13	cGc/cAc																																																																														
NSD1	0	MSKCC	GRCh37	5	176673759	176673759	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	116	495	0	ENST00000439151.2:c.4463del	p.Asn1488MetfsTer15	p.N1488Mfs*15	ENST00000439151	NM_022455.4	1487	Aaa/aa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	114	641	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	236	619	2	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431873	49431874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	89	649	1	ENST00000301067.7:c.9265dupG	p.Val3089GlyfsTer9	p.V3089Gfs*9	ENST00000301067	NM_003482.3	3089	gtg/gGtg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495715	56495715	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	24	446	0	ENST00000267101.3:c.3910delC	p.His1304MetfsTer7	p.H1304Mfs*7	ENST00000267101	NM_001982.3	1302	gCc/gc																																																																														
TBX3	0	MSKCC	GRCh37	12	115115385	115115386	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	90	536	0	ENST00000257566.3:c.940dup	p.Arg314LysfsTer13	p.R314Kfs*13	ENST00000257566	NM_016569.3	314	aga/aAga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66286238	66286238	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	75	421	1	ENST00000273854.3:c.1448del	p.Asn483ThrfsTer18	p.N483Tfs*18	ENST00000273854	NM_004439.5	483	aAc/ac																																																																														
MAPK3	0	MSKCC	GRCh37	16	30134451	30134452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	101	505	0	ENST00000263025.4:c.79dup	p.Glu27GlyfsTer35	p.E27Gfs*35	ENST00000263025	NM_002746.2	27	gag/gGag																																																																														
ERF	0	MSKCC	GRCh37	19	42752763	42752763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	158	700	1	ENST00000222329.4:c.1501G>A	p.Ala501Thr	p.A501T	ENST00000222329	NM_006494.2	501	Gct/Act																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092980	27092980	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	30	400	0	ENST00000324856.7:c.2914del	p.Asp972MetfsTer2	p.D972Mfs*2	ENST00000324856	NM_006015.4	971	Ggg/gg																																																																														
EP300	2033	MSKCC	GRCh37	22	41525977	41525977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	114	539	0	ENST00000263253.7:c.1256del	p.Asn419MetfsTer12	p.N419Mfs*12	ENST00000263253	NM_001429.3	418	Aaa/aa																																																																														
MTOR	0	MSKCC	GRCh37	1	11217306	11217306	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	126	602	0	ENST00000361445.4:c.4372G>C	p.Asp1458His	p.D1458H	ENST00000361445	NM_004958.3	1458	Gat/Cat																																																																														
MTOR	0	MSKCC	GRCh37	1	11272530	11272530	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	72	367	0	ENST00000361445.4:c.3400G>A	p.Ala1134Thr	p.A1134T	ENST00000361445	NM_004958.3	1134	Gca/Aca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023624	27023660	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCTGCCGGCTCCAAGCCGCCTCCCTCCTCCA	GCGGCGGCTGCCGGCTCCAAGCCGCCTCCCTCCTCCA	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	93	446	0	ENST00000324856.7:c.733_769del	p.Ala245ProfsTer106	p.A245Pfs*106	ENST00000324856	NM_006015.4	244	GCGGCGGCTGCCGGCTCCAAGCCGCCTCCCTCCTCCAgc/gc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101565	27101565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	119	679	3	ENST00000324856.7:c.4847C>T	p.Ala1616Val	p.A1616V	ENST00000324856	NM_006015.4	1616	gCa/gTa																																																																														
DDR2	0	MSKCC	GRCh37	1	162742039	162742039	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	62	446	2	ENST00000367921.3:c.1728+2T>C		p.X576_splice	ENST00000367921	NM_006182.2	576																																																																															
SHOC2	0	MSKCC	GRCh37	10	112745407	112745407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	86	544	1	ENST00000369452.4:c.725C>T	p.Thr242Met	p.T242M	ENST00000369452	NM_007373.3	242	aCg/aTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71944732	71944732	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	167	708	1	ENST00000298229.2:c.2160del	p.Val721CysfsTer37	p.V721Cfs*37	ENST00000298229	NM_001567.3	719	tCc/tc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94225948	94225948	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	100	384	0	ENST00000323929.3:c.20T>C	p.Leu7Pro	p.L7P	ENST00000323929	NM_005591.3	7	cTt/cCt																																																																														
ATM	0	MSKCC	GRCh37	11	108175510	108175510	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	101	410	2	ENST00000278616.4:c.5609del	p.Phe1870SerfsTer47	p.F1870Sfs*47	ENST00000278616	NM_000051.3	1869	Ttt/tt																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50490745	50490745	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	106	526	1	ENST00000394963.4:c.1384del	p.Asp462ThrfsTer5	p.D462Tfs*5	ENST00000394963	NM_003076.4	461	aGg/ag																																																																														
MGA	0	MSKCC	GRCh37	15	42042588	42042588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	110	469	1	ENST00000219905.7:c.6787del	p.Ser2263AlafsTer72	p.S2263Afs*72	ENST00000219905	NM_001164273.1	2261	gcA/gc																																																																														
SLX4	0	MSKCC	GRCh37	16	3647625	3647625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	120	801	0	ENST00000294008.3:c.1438G>T	p.Gly480Cys	p.G480C	ENST00000294008	NM_032444.2	480	Ggc/Tgc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89341601	89341601	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	27	396	0	ENST00000301030.4:c.7471-2A>G		p.X2491_splice	ENST00000301030	NM_001256183.1	2491																																																																															
NF1	0	MSKCC	GRCh37	17	29563004	29563004	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	81	465	0	ENST00000358273.4:c.3939T>A	p.Asp1313Glu	p.D1313E	ENST00000358273	NM_001042492.2	1313	gaT/gaA																																																																														
KMT2B	0	MSKCC	GRCh37	19	36219957	36219957	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	84	616	0	ENST00000222270.7:c.4759T>C	p.Tyr1587His	p.Y1587H	ENST00000222270	NM_014727.1	1587	Tac/Cac																																																																														
TAP2	0	MSKCC	GRCh37	6	32800555	32800555	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	157	686	0	ENST00000374899.4:c.992T>C	p.Val331Ala	p.V331A	ENST00000374899	NM_018833.2	331	gTg/gCg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509345	106509345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	37	487	1	ENST00000359195.3:c.1339G>A	p.Ala447Thr	p.A447T	ENST00000359195	NM_002649.2	447	Gca/Aca																																																																														
BRAF	0	MSKCC	GRCh37	7	140481382	140481382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	43	330	0	ENST00000288602.6:c.1426T>C	p.Trp476Arg	p.W476R	ENST00000288602	NM_004333.4	476	Tgg/Cgg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859953	151859953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	24	351	1	ENST00000262189.6:c.10709G>A	p.Cys3570Tyr	p.C3570Y	ENST00000262189	NM_170606.2	3570	tGt/tAt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98238372	98238372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	122	512	0	ENST00000331920.6:c.1672G>A	p.Ala558Thr	p.A558T	ENST00000331920	NM_000264.3	558	Gcc/Acc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413097	139413097	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	134	625	0	ENST00000277541.6:c.1045A>T	p.Thr349Ser	p.T349S	ENST00000277541	NM_017617.3	349	Acc/Tcc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413136	139413136	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	185	699	0	ENST00000277541.6:c.1006A>T	p.Ile336Phe	p.I336F	ENST00000277541	NM_017617.3	336	Att/Ttt																																																																														
ARAF	0	MSKCC	GRCh37	X	47426783	47426783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	29	476	0	ENST00000377045.4:c.1028C>A	p.Pro343His	p.P343H	ENST00000377045	NM_001654.4	343	cCc/cAc																																																																														
STAG2	0	MSKCC	GRCh37	X	123184118	123184118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	75	413	0	ENST00000218089.9:c.976G>A	p.Asp326Asn	p.D326N	ENST00000218089	NM_001042749.1	326	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	343	512	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
RET	0	MSKCC	GRCh37	10	43597850	43597850	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138265837		P-0031438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	68	624	2	ENST00000355710.3:c.398G>A	p.Arg133His	p.R133H	ENST00000355710	NM_020975.4	133	cGt/cAt																																																																														
CYLD	0	MSKCC	GRCh37	16	50811777	50811777	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	88	429	0	ENST00000398568.2:c.1057del	p.Tyr353IlefsTer3	p.Y353Ifs*3	ENST00000398568	NM_001042412.1	352	Ttt/tt																																																																														
TSHR	0	MSKCC	GRCh37	14	81609467	81609467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	36	439	0	ENST00000298171.2:c.1065C>A	p.Phe355Leu	p.F355L	ENST00000298171	NM_000369.2	355	ttC/ttA																																																																														
INPP4B	0	MSKCC	GRCh37	4	143043375	143043375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	56	336	0	ENST00000262992.4:c.2041G>T	p.Asp681Tyr	p.D681Y	ENST00000262992	NM_001101669.1	681	Gac/Tac																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42845360	42845360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	78	531	0	ENST00000398585.3:c.902C>T	p.Pro301Leu	p.P301L	ENST00000398585	NM_001135099.1	301	cCg/cTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55211157	55211157	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	142	470	0	ENST00000275493.2:c.400G>T	p.Glu134Ter	p.E134*	ENST00000275493	NM_005228.3	134	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	138	533	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
EPHA7	0	MSKCC	GRCh37	6	93979269	93979269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	41	392	0	ENST00000369303.4:c.1559C>A	p.Ala520Asp	p.A520D	ENST00000369303	NM_004440.3	520	gCt/gAt																																																																														
SOX2	0	MSKCC	GRCh37	3	181430160	181430160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	17	121	0	ENST00000325404.1:c.12G>T	p.Met4Ile	p.M4I	ENST00000325404	NM_003106.3	4	atG/atT																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576121	88576121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	60	573	0	ENST00000360948.2:c.1552C>A	p.Arg518Ser	p.R518S	ENST00000360948	NM_001012338.2	518	Cgt/Agt																																																																														
SMO	0	MSKCC	GRCh37	7	128850951	128850951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	43	403	0	ENST00000249373.3:c.1798G>A	p.Val600Met	p.V600M	ENST00000249373	NM_005631.4	600	Gtg/Atg																																																																														
MTOR	0	MSKCC	GRCh37	1	11188548	11188548	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	41	427	0	ENST00000361445.4:c.5873A>T	p.His1958Leu	p.H1958L	ENST00000361445	NM_004958.3	1958	cAc/cTc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120468261	120468261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	44	519	0	ENST00000256646.2:c.4178G>C	p.Arg1393Pro	p.R1393P	ENST00000256646	NM_024408.3	1393	cGc/cCc																																																																														
IKBKE	0	MSKCC	GRCh37	1	206653396	206653396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	63	563	0	ENST00000367120.3:c.1280G>T	p.Arg427Leu	p.R427L	ENST00000367120	NM_014002.3	427	cGg/cTg																																																																														
TET1	0	MSKCC	GRCh37	10	70333188	70333188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	109	570	2	ENST00000373644.4:c.1093C>A	p.Leu365Ile	p.L365I	ENST00000373644	NM_030625.2	365	Cta/Ata																																																																														
TET1	0	MSKCC	GRCh37	10	70333822	70333822	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	65	419	0	ENST00000373644.4:c.1727A>T	p.Tyr576Phe	p.Y576F	ENST00000373644	NM_030625.2	576	tAt/tTt																																																																														
WT1	0	MSKCC	GRCh37	11	32410674	32410674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	41	379	0	ENST00000332351.3:c.1484G>C	p.Arg495Pro	p.R495P	ENST00000332351	NM_024426.4	495	cGg/cCg																																																																														
PGR	0	MSKCC	GRCh37	11	100998657	100998657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	48	638	0	ENST00000325455.5:c.1145del	p.Pro382ArgfsTer4	p.P382Rfs*4	ENST00000325455	NM_001202474.3	382	cCg/cg																																																																														
PGR	0	MSKCC	GRCh37	11	100999032	100999032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	34	538	0	ENST00000325455.5:c.770C>G	p.Pro257Arg	p.P257R	ENST00000325455	NM_001202474.3	257	cCg/cGg																																																																														
KDM5A	0	MSKCC	GRCh37	12	438196	438196	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	26	286	0	ENST00000399788.2:c.1774-1G>A		p.X592_splice	ENST00000399788	NM_001042603.1	592																																																																															
ARID2	0	MSKCC	GRCh37	12	46244309	46244310	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	73	405	0	ENST00000334344.6:c.2406dup	p.Gly803TrpfsTer38	p.G803Wfs*38	ENST00000334344	NM_152641.2	801	-/T																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433541	49433541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	129	752	1	ENST00000301067.7:c.8012G>A	p.Gly2671Asp	p.G2671D	ENST00000301067	NM_003482.3	2671	gGc/gAc																																																																														
PTPN11	0	MSKCC	GRCh37	12	112939999	112939999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	50	435	0	ENST00000351677.2:c.1651G>T	p.Asp551Tyr	p.D551Y	ENST00000351677	NM_002834.3	551	Gac/Tac																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434381	121434381	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	97	591	0	ENST00000257555.6:c.1145C>G	p.Thr382Ser	p.T382S	ENST00000257555		382	aCc/aGc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30100220	30100220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	40	357	0	ENST00000331968.5:c.1400C>A	p.Pro467His	p.P467H	ENST00000331968	NM_002742.2	467	cCt/cAt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061532	38061532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	25	270	0	ENST00000250448.2:c.457G>T	p.Ala153Ser	p.A153S	ENST00000250448	NM_004496.3	153	Gcg/Tcg																																																																														
MGA	0	MSKCC	GRCh37	15	42058261	42058261	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	36	331	0	ENST00000219905.7:c.7981G>T	p.Gly2661Ter	p.G2661*	ENST00000219905	NM_001164273.1	2661	Gga/Tga																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472534	88472534	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	34	530	0	ENST00000360948.2:c.2021A>T	p.His674Leu	p.H674L	ENST00000360948	NM_001012338.2	674	cAc/cTc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678566	88678566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	19	314	0	ENST00000360948.2:c.970G>T	p.Val324Leu	p.V324L	ENST00000360948	NM_001012338.2	324	Gtg/Ttg																																																																														
CYLD	0	MSKCC	GRCh37	16	50811781	50811781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	100	480	0	ENST00000398568.2:c.1058A>G	p.Tyr353Cys	p.Y353C	ENST00000398568	NM_001042412.1	353	tAt/tGt																																																																														
FANCA	0	MSKCC	GRCh37	16	89862370	89862370	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	63	537	0	ENST00000389301.3:c.950A>G	p.Lys317Arg	p.K317R	ENST00000389301	NM_000135.2	317	aAg/aGg																																																																														
FANCA	0	MSKCC	GRCh37	16	89862409	89862409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	52	486	0	ENST00000389301.3:c.911G>T	p.Gly304Val	p.G304V	ENST00000389301	NM_000135.2	304	gGa/gTa																																																																														
NF1	0	MSKCC	GRCh37	17	29527523	29527523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	81	512	0	ENST00000358273.4:c.972T>G	p.Cys324Trp	p.C324W	ENST00000358273	NM_001042492.2	324	tgT/tgG																																																																														
STAT5B	0	MSKCC	GRCh37	17	40354443	40354443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	183	650	0	ENST00000293328.3:c.2152G>T	p.Ala718Ser	p.A718S	ENST00000293328	NM_012448.3	718	Gcc/Tcc																																																																														
RAD51C	0	MSKCC	GRCh37	17	56780679	56780679	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	60	427	0	ENST00000337432.4:c.694G>T	p.Glu232Ter	p.E232*	ENST00000337432	NM_058216.2	232	Gaa/Taa																																																																														
SOX9	0	MSKCC	GRCh37	17	70120356	70120356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	251	744	0	ENST00000245479.2:c.1358G>A	p.Ser453Asn	p.S453N	ENST00000245479	NM_000346.3	453	aGc/aAc																																																																														
UPF1	0	MSKCC	GRCh37	19	18971160	18971160	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	137	651	0	ENST00000262803.5:c.2213A>T	p.Gln738Leu	p.Q738L	ENST00000262803	NM_002911.3	738	cAg/cTg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867535	45867535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	125	672	0	ENST00000391945.4:c.773G>T	p.Arg258Leu	p.R258L	ENST00000391945	NM_000400.3	258	cGg/cTg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25991682	25991682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	38	368	0	ENST00000435504.4:c.560C>A	p.Ser187Tyr	p.S187Y	ENST00000435504		187	tCc/tAc																																																																														
PMS1	0	MSKCC	GRCh37	2	190717379	190717379	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	52	288	0	ENST00000441310.2:c.700-2A>T		p.X234_splice	ENST00000441310	NM_000534.4	234																																																																															
DNMT3B	0	MSKCC	GRCh37	20	31384614	31384614	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	65	540	0	ENST00000328111.2:c.1316G>T	p.Gly439Val	p.G439V	ENST00000328111	NM_006892.3	439	gGc/gTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306735	41306735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	422	0	ENST00000373198.4:c.924G>T	p.Lys308Asn	p.K308N	ENST00000373198	NM_133170.3	308	aaG/aaT																																																																														
PTPRT	0	MSKCC	GRCh37	20	41408860	41408860	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	28	407	0	ENST00000373198.4:c.566G>T	p.Cys189Phe	p.C189F	ENST00000373198	NM_133170.3	189	tGc/tTc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42845358	42845360	+	frameshift_variant	Frame_Shift_Del	DEL	CCG	CCG	AA			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	78	538	1	ENST00000398585.3:c.902_904delinsTT	p.Pro301LeufsTer29	p.P301Lfs*29	ENST00000398585	NM_001135099.1	301	cCGGgg/cTTgg																																																																														
PPARG	0	MSKCC	GRCh37	3	12434218	12434218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	37	417	0	ENST00000287820.6:c.586C>A	p.Gln196Lys	p.Q196K	ENST00000287820	NM_015869.4	196	Cag/Aag																																																																														
SETD2	0	MSKCC	GRCh37	3	47125873	47125873	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	35	127	0	ENST00000409792.3:c.5398-1G>T		p.X1800_splice	ENST00000409792	NM_014159.6	1800																																																																															
SHQ1	0	MSKCC	GRCh37	3	72891443	72891443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	37	387	0	ENST00000325599.8:c.319G>C	p.Val107Leu	p.V107L	ENST00000325599	NM_018130.2	107	Gtg/Ctg																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73113233	73113233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	31	156	1	ENST00000356692.5:c.574G>T	p.Gly192Trp	p.G192W	ENST00000356692		192	Ggg/Tgg																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114261	73114261	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	26	276	0	ENST00000356692.5:c.897G>C	p.Glu299Asp	p.E299D	ENST00000356692		299	gaG/gaC																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480480	89480480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	44	284	0	ENST00000336596.2:c.2317G>T	p.Asp773Tyr	p.D773Y	ENST00000336596	NM_005233.5	773	Gat/Tat																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499331	89499331	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	28	297	0	ENST00000336596.2:c.2501T>G	p.Ile834Ser	p.I834S	ENST00000336596	NM_005233.5	834	aTt/aGt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521612	89521612	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	33	286	0	ENST00000336596.2:c.2691-2A>T		p.X897_splice	ENST00000336596	NM_005233.5	897																																																																															
FOXL2	0	MSKCC	GRCh37	3	138665527	138665527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	93	465	0	ENST00000330315.3:c.38G>T	p.Gly13Val	p.G13V	ENST00000330315	NM_023067.3	13	gGg/gTg																																																																														
ATR	0	MSKCC	GRCh37	3	142274718	142274718	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	48	275	0	ENST00000350721.4:c.2341+1G>T		p.X781_splice	ENST00000350721	NM_001184.3	781																																																																															
PRKCI	0	MSKCC	GRCh37	3	170020887	170020887	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	22	154	0	ENST00000295797.4:c.1763T>C	p.Leu588Pro	p.L588P	ENST00000295797	NM_002740.5	588	cTt/cCt																																																																														
SOX2	0	MSKCC	GRCh37	3	181430227	181430229	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	23	324	0	ENST00000325404.1:c.87_89del	p.Ala30del	p.A30del	ENST00000325404	NM_003106.3	27	GCG/-																																																																														
TP63	0	MSKCC	GRCh37	3	189587170	189587170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	47	401	0	ENST00000264731.3:c.1187C>T	p.Pro396Leu	p.P396L	ENST00000264731	NM_003722.4	396	cCa/cTa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197750	66197751	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	37	423	0	ENST00000273854.3:c.2948_2949del	p.Thr983ArgfsTer65	p.T983Rfs*65	ENST00000273854	NM_004439.5	983	aCA/a																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356143	66356143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	35	398	1	ENST00000273854.3:c.1354C>A	p.Pro452Thr	p.P452T	ENST00000273854	NM_004439.5	452	Cca/Aca																																																																														
FAT1	0	MSKCC	GRCh37	4	187518876	187518876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	65	483	0	ENST00000441802.2:c.12328G>T	p.Gly4110Cys	p.G4110C	ENST00000441802	NM_005245.3	4110	Ggc/Tgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187541193	187541193	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	52	291	0	ENST00000441802.2:c.6547G>T	p.Glu2183Ter	p.E2183*	ENST00000441802	NM_005245.3	2183	Gaa/Taa																																																																														
TERT	0	MSKCC	GRCh37	5	1295322	1295322	+	upstream_gene_variant	5'Flank	DEL	G	G	-			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	121	429	0				ENST00000310581	NM_198253.2																																																																																
IL7R	0	MSKCC	GRCh37	5	35871314	35871314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs200751605		P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	62	338	2	ENST00000303115.3:c.536C>A	p.Thr179Lys	p.T179K	ENST00000303115	NM_002185.3	179	aCg/aAg																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225392	26225392	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	17	226	0	ENST00000360408.1:c.10A>T	p.Thr4Ser	p.T4S	ENST00000360408	NM_003532.2	4	Act/Tct																																																																														
EZH2	0	MSKCC	GRCh37	7	148515129	148515129	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	80	349	0	ENST00000320356.2:c.1080A>T	p.Arg360Ser	p.R360S	ENST00000320356	NM_004456.4	360	agA/agT																																																																														
FGFR1	0	MSKCC	GRCh37	8	38279318	38279319	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	47	621	0	ENST00000425967.3:c.1170_1171delinsTT	p.Glu391Ter	p.E391*	ENST00000425967	NM_001174067.1	390	ctGGaa/ctTTaa																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981662	70981662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	76	753	0	ENST00000276594.2:c.434G>T	p.Gly145Val	p.G145V	ENST00000276594	NM_024504.3	145	gGa/gTa																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5549569	5549569	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	126	554	0	ENST00000397747.3:c.596T>A	p.Val199Glu	p.V199E	ENST00000397747	NM_025239.3	199	gTg/gAg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8340441	8340441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	113	331	0	ENST00000356435.5:c.5155G>T	p.Gly1719Trp	p.G1719W	ENST00000356435		1719	Ggg/Tgg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484156	8484156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	57	435	0	ENST00000356435.5:c.3376G>T	p.Val1126Leu	p.V1126L	ENST00000356435		1126	Gtg/Ttg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499690	8499690	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	134	401	0	ENST00000356435.5:c.2279A>T	p.Lys760Met	p.K760M	ENST00000356435		760	aAg/aTg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101895023	101895023	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	58	203	0	ENST00000374994.4:c.574+2T>A		p.X192_splice	ENST00000374994	NM_004612.2	192																																																																															
ABL1	0	MSKCC	GRCh37	9	133760285	133760285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	133	456	0	ENST00000318560.5:c.2608G>A	p.Ala870Thr	p.A870T	ENST00000318560	NM_005157.4	870	Gcc/Acc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390837	139390837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	122	670	1	ENST00000277541.6:c.7354G>T	p.Ala2452Ser	p.A2452S	ENST00000277541	NM_017617.3	2452	Gcg/Tcg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402562	139402562	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	153	604	0	ENST00000277541.6:c.3355G>T	p.Gly1119Ter	p.G1119*	ENST00000277541	NM_017617.3	1119	Gga/Tga																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139438502	139438502	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	204	663	0	ENST00000277541.6:c.114A>T	p.Glu38Asp	p.E38D	ENST00000277541	NM_017617.3	38	gaA/gaT																																																																														
MED12	0	MSKCC	GRCh37	X	70353052	70353052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	45	229	0	ENST00000374080.3:c.4607G>T	p.Arg1536Leu	p.R1536L	ENST00000374080		1536	cGg/cTg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42845355	42845355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	75	542	0	ENST00000398585.3:c.907del	p.Ala303ProfsTer27	p.A303Pfs*27	ENST00000398585	NM_001135099.1	303	Gcc/cc																																																																														
PPARG	0	MSKCC	GRCh37	3	12475459	12475464	+	missense_variant	Missense_Mutation	ONP	CTGGAG	CTGGAG	ATGGAC			P-0031442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	66	552	0	ENST00000287820.6:c.1333_1338delinsATGGAC	p.Leu445_Glu446delinsMetAsp	p.L445_E446delinsMD	ENST00000287820	NM_015869.4	445	CTGGAG/ATGGAC																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495375	56495377	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	83	568	0	ENST00000267101.3:c.3573_3575del	p.Glu1191del	p.E1191del	ENST00000267101	NM_001982.3	1189	GAA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	203	672	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
RNF43	0	MSKCC	GRCh37	17	56435581	56435581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200166143		P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	206	665	0	ENST00000407977.2:c.1556G>A	p.Arg519Gln	p.R519Q	ENST00000407977		519	cGa/cAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713485	40713485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	52	553	0	ENST00000373198.4:c.4030C>T	p.Pro1344Ser	p.P1344S	ENST00000373198	NM_133170.3	1344	Cca/Tca																																																																														
EPHA5	0	MSKCC	GRCh37	4	66189873	66189873	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	47	386	0	ENST00000273854.3:c.3073G>T	p.Glu1025Ter	p.E1025*	ENST00000273854	NM_004439.5	1025	Gaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112175488	112175488	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	60	310	0	ENST00000257430.4:c.4198del	p.Ser1400ArgfsTer15	p.S1400Rfs*15	ENST00000257430	NM_000038.5	1399	cgT/cg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70982002	70982002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	170	771	0	ENST00000276594.2:c.94C>A	p.Pro32Thr	p.P32T	ENST00000276594	NM_024504.3	32	Cct/Act																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400978	139400978	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0031450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	63	481	0	ENST00000277541.6:c.4014+1G>A		p.X1338_splice	ENST00000277541	NM_017617.3	1338																																																																															
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	145	265	0	ENST00000349496.5:c.95A>C	p.Asp32Ala	p.D32A	ENST00000349496	NM_001904.3	32	gAc/gCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	118	371	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579585	7579591	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGGGGAC	GGGGGAC	TGGGAA			P-0031453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	74	458	1	ENST00000269305.4:c.97-1_102delinsTTCCCA		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
RNF43	0	MSKCC	GRCh37	17	56492730	56492730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	13	465	1	ENST00000407977.2:c.209C>T	p.Ala70Val	p.A70V	ENST00000407977		70	gCt/gTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584825	48584825	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0031453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	61	240	0	ENST00000342988.3:c.903C>A	p.Tyr301Ter	p.Y301*	ENST00000342988	NM_005359.5	301	taC/taA																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170039	32170052	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCATCGCAGGC	CCAGCATCGCAGGC	-			P-0031453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	106	675	0	ENST00000375023.3:c.3556_3569del	p.Ala1186LeufsTer44	p.A1186Lfs*44	ENST00000375023	NM_004557.3	1186	GCCTGCGATGCTGGc/c																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	98	615	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	123	640	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MED12	0	MSKCC	GRCh37	X	70360630	70360630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			266	50	280	0	ENST00000374080.3:c.6190C>T	p.Gln2064Ter	p.Q2064*	ENST00000374080		2064	Cag/Tag																																																																														
TSHR	0	MSKCC	GRCh37	14	81554374	81554374	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	24	349	0	ENST00000298171.2:c.392+2T>A		p.X131_splice	ENST00000298171	NM_000369.2	131																																																																															
PLCG2	0	MSKCC	GRCh37	16	81925134	81925134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	65	553	0	ENST00000359376.3:c.925G>A	p.Val309Met	p.V309M	ENST00000359376	NM_002661.3	309	Gtg/Atg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42860329	42860329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			715	52	526	0	ENST00000398585.3:c.548A>G	p.Asn183Ser	p.N183S	ENST00000398585	NM_001135099.1	183	aAt/aGt																																																																														
SDHA	0	MSKCC	GRCh37	5	235281	235281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	26	409	0	ENST00000264932.6:c.1087C>T	p.His363Tyr	p.H363Y	ENST00000264932	NM_004168.2	363	Cac/Tac																																																																														
RBM10	0	MSKCC	GRCh37	X	47039288	47039288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	120	774	0	ENST00000329236.7:c.680T>C	p.Leu227Ser	p.L227S	ENST00000329236	NM_001204466.1	227	tTg/tCg																																																																														
RBM10	0	MSKCC	GRCh37	X	47039297	47039297	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031470-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	125	799	0	ENST00000329236.7:c.689T>G	p.Leu230Arg	p.L230R	ENST00000329236	NM_001204466.1	230	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578192	7578193	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATA			P-0031473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	68	640	0	ENST00000269305.4:c.582_656dup	p.Ile195_Pro219dup	p.I195_P219dup	ENST00000269305	NM_001126112.2	195	ccc/ccTATCCGAGTGGAAGGAAATTTGCGTGTGGAGTATTTGGATGACAGAAACACTTTTCGACATAGTGTGGTGGTGCCc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412016	63412016	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	195	276	0	ENST00000330258.3:c.1151A>T	p.Glu384Val	p.E384V	ENST00000330258	NM_152424.3	384	gAg/gTg																																																																														
BLM	0	MSKCC	GRCh37	15	91337488	91337488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	38	397	0	ENST00000355112.3:c.3111G>T	p.Arg1037Ser	p.R1037S	ENST00000355112	NM_000057.2	1037	agG/agT																																																																														
TP53	0	MSKCC	GRCh37	17	7579503	7579503	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	50	540	0	ENST00000269305.4:c.184del	p.Glu62LysfsTer61	p.E62Kfs*61	ENST00000269305	NM_001126112.2	62	Gaa/aa																																																																														
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	163	526	0	ENST00000288135.5:c.1676T>G	p.Val559Gly	p.V559G	ENST00000288135	NM_000222.2	559	gTt/gGt																																																																														
EPAS1	0	MSKCC	GRCh37	2	46603793	46603793	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	43	584	0	ENST00000263734.3:c.1150G>C	p.Glu384Gln	p.E384Q	ENST00000263734	NM_001430.4	384	Gag/Cag																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245846	41245846	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	19	480	0	ENST00000357654.3:c.1702C>G	p.Pro568Ala	p.P568A	ENST00000357654	NM_007294.3	568	Cct/Gct																																																																														
ERCC3	0	MSKCC	GRCh37	2	128044359	128044359	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	32	594	0	ENST00000285398.2:c.1262G>A	p.Trp421Ter	p.W421*	ENST00000285398	NM_000122.1	421	tGg/tAg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520416	176520416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	16	613	0	ENST00000292408.4:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000292408	NM_213647.1	421	Gag/Aag																																																																														
LATS1	0	MSKCC	GRCh37	6	150001083	150001083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	39	413	0	ENST00000253339.5:c.2521C>T	p.His841Tyr	p.H841Y	ENST00000253339		841	Cat/Tat																																																																														
BTK	0	MSKCC	GRCh37	X	100617557	100617557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	15	514	0	ENST00000308731.7:c.512G>T	p.Arg171Met	p.R171M	ENST00000308731	NM_000061.2	171	aGg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	92	466	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
AR	0	MSKCC	GRCh37	X	66766412	66766412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200390780		P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	33	128	0	ENST00000374690.3:c.1424C>T	p.Ala475Val	p.A475V	ENST00000374690	NM_000044.3	475	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	106	360	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	45	475	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717717	89717717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	110	440	0	ENST00000371953.3:c.743del	p.Pro248LeufsTer8	p.P248Lfs*8	ENST00000371953	NM_000314.4	248	Cct/ct																																																																														
PTPN11	0	MSKCC	GRCh37	12	112891120	112891120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	114	652	0	ENST00000351677.2:c.454C>T	p.Arg152Cys	p.R152C	ENST00000351677	NM_002834.3	152	Cgc/Tgc																																																																														
EIF4E	0	MSKCC	GRCh37	4	99823087	99823087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	46	332	0	ENST00000280892.6:c.125C>T	p.Thr42Met	p.T42M	ENST00000280892	NM_001130678.1	42	aCg/aTg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101904941	101904941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	87	406	0	ENST00000374994.4:c.929C>A	p.Ala310Glu	p.A310E	ENST00000374994	NM_004612.2	310	gCg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	632	566	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589612	67589613	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAGTCGAGAATATG			P-0031484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	244	319	0	ENST00000274335.5:c.1377_1391dup	p.Tyr463_Asp464insGluSerArgGluTyr	p.Y463_D464insESREY	ENST00000274335		459	aaa/aAAAGTCGAGAATATGaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	106	487	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	121	285	0				ENST00000310581	NM_198253.2																																																																																
DOT1L	0	MSKCC	GRCh37	19	2185868	2185868	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	185	693	0	ENST00000398665.3:c.140A>T	p.Glu47Val	p.E47V	ENST00000398665	NM_032482.2	47	gAa/gTa																																																																														
PTCH1	0	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	10	34	0	ENST00000331920.6:c.49_51delGGC	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																																																														
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	59	330	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga																																																																														
ATM	0	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	108	511	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																														
NEGR1	0	MSKCC	GRCh37	1	72241912	72241912	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	22	429	0	ENST00000357731.5:c.478T>A	p.Cys160Ser	p.C160S	ENST00000357731	NM_173808.2	160	Tgt/Agt																																																																														
ATM	0	MSKCC	GRCh37	11	108106562	108106562	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	44	345	0	ENST00000278616.4:c.496+1G>T		p.X166_splice	ENST00000278616	NM_000051.3	166																																																																															
RAD51B	0	MSKCC	GRCh37	14	68331719	68331719	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	10	106	0	ENST00000487270.1:c.316-1G>C		p.X106_splice	ENST00000487270	NM_133509.3	106																																																																															
APC	0	MSKCC	GRCh37	5	112174215	112174218	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0031487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	38	455	0	ENST00000257430.4:c.2925_2928del	p.Arg976ValfsTer3	p.R976Vfs*3	ENST00000257430	NM_000038.5	975	aAAAGa/aa																																																																														
PTEN	0	MSKCC	GRCh37	10	89720709	89720709	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	131	93	0	ENST00000371953.3:c.860C>G	p.Ser287Ter	p.S287*	ENST00000371953	NM_000314.4	287	tCa/tGa																																																																														
SPEN	0	MSKCC	GRCh37	1	16257434	16257434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	310	485	0	ENST00000375759.3:c.4699G>A	p.Glu1567Lys	p.E1567K	ENST00000375759	NM_015001.2	1567	Gag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16256750	16256750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	323	507	0	ENST00000375759.3:c.4015C>T	p.Arg1339Cys	p.R1339C	ENST00000375759	NM_015001.2	1339	Cgt/Tgt																																																																														
SPEN	0	MSKCC	GRCh37	1	16255496	16255496	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	324	543	0	ENST00000375759.3:c.2761C>T	p.Gln921Ter	p.Q921*	ENST00000375759	NM_015001.2	921	Cag/Tag																																																																														
TERT	0	MSKCC	GRCh37	5	1254522	1254522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	359	824	2	ENST00000310581.5:c.3256C>T	p.Arg1086Cys	p.R1086C	ENST00000310581	NM_198253.2	1086	Cgt/Tgt																																																																														
SPEN	0	MSKCC	GRCh37	1	16259043	16259043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	542	680	0	ENST00000375759.3:c.6313delG	p.Ala2105LeufsTer33	p.A2105Lfs*33	ENST00000375759	NM_015001.2	2103	aGg/ag																																																																														
SPEN	0	MSKCC	GRCh37	1	16259893	16259893	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	638	627	0	ENST00000375759.3:c.7158G>C	p.Gln2386His	p.Q2386H	ENST00000375759	NM_015001.2	2386	caG/caC																																																																														
SPEN	0	MSKCC	GRCh37	1	16255934	16255934	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	282	569	0	ENST00000375759.3:c.3199C>T	p.Gln1067Ter	p.Q1067*	ENST00000375759	NM_015001.2	1067	Cag/Tag																																																																														
SPEN	0	MSKCC	GRCh37	1	16259068	16259068	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	595	677	0	ENST00000375759.3:c.6333G>C	p.Glu2111Asp	p.E2111D	ENST00000375759	NM_015001.2	2111	gaG/gaC																																																																														
SPEN	0	MSKCC	GRCh37	1	16255220	16255220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	295	496	0	ENST00000375759.3:c.2485C>T	p.His829Tyr	p.H829Y	ENST00000375759	NM_015001.2	829	Cac/Tac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123685	11123685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	239	609	3	ENST00000344626.4:c.2335G>A	p.Asp779Asn	p.D779N	ENST00000344626	NM_003072.3	779	Gac/Aac																																																																														
SPEN	0	MSKCC	GRCh37	1	16256568	16256568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	311	529	0	ENST00000375759.3:c.3833C>A	p.Ser1278Tyr	p.S1278Y	ENST00000375759	NM_015001.2	1278	tCc/tAc																																																																														
SPEN	0	MSKCC	GRCh37	1	16257014	16257014	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	309	495	0	ENST00000375759.3:c.4279G>C	p.Glu1427Gln	p.E1427Q	ENST00000375759	NM_015001.2	1427	Gaa/Caa																																																																														
SPEN	0	MSKCC	GRCh37	1	16257102	16257102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	343	500	0	ENST00000375759.3:c.4367C>T	p.Ser1456Leu	p.S1456L	ENST00000375759	NM_015001.2	1456	tCa/tTa																																																																														
SPEN	0	MSKCC	GRCh37	1	16257797	16257797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	302	512	0	ENST00000375759.3:c.5062G>A	p.Glu1688Lys	p.E1688K	ENST00000375759	NM_015001.2	1688	Gaa/Aaa																																																																														
SPEN	0	MSKCC	GRCh37	1	16257971	16257971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	251	540	0	ENST00000375759.3:c.5236G>A	p.Glu1746Lys	p.E1746K	ENST00000375759	NM_015001.2	1746	Gag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16257975	16257975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	251	524	0	ENST00000375759.3:c.5240G>A	p.Ser1747Asn	p.S1747N	ENST00000375759	NM_015001.2	1747	aGc/aAc																																																																														
SPEN	0	MSKCC	GRCh37	1	16258091	16258091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	248	491	0	ENST00000375759.3:c.5356G>A	p.Asp1786Asn	p.D1786N	ENST00000375759	NM_015001.2	1786	Gat/Aat																																																																														
SPEN	0	MSKCC	GRCh37	1	16258820	16258820	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	648	701	1	ENST00000375759.3:c.6085G>T	p.Glu2029Ter	p.E2029*	ENST00000375759	NM_015001.2	2029	Gaa/Taa																																																																														
SPEN	0	MSKCC	GRCh37	1	16258869	16258869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	705	720	0	ENST00000375759.3:c.6134G>C	p.Arg2045Thr	p.R2045T	ENST00000375759	NM_015001.2	2045	aGa/aCa																																																																														
SPEN	0	MSKCC	GRCh37	1	16259573	16259573	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	578	543	0	ENST00000375759.3:c.6838G>C	p.Glu2280Gln	p.E2280Q	ENST00000375759	NM_015001.2	2280	Gaa/Caa																																																																														
SPEN	0	MSKCC	GRCh37	1	16259654	16259654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	706	615	0	ENST00000375759.3:c.6919G>A	p.Glu2307Lys	p.E2307K	ENST00000375759	NM_015001.2	2307	Gaa/Aaa																																																																														
SPEN	0	MSKCC	GRCh37	1	16260485	16260485	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	423	471	0	ENST00000375759.3:c.7750del	p.Glu2584LysfsTer7	p.E2584Kfs*7	ENST00000375759	NM_015001.2	2584	Gaa/aa																																																																														
SPEN	0	MSKCC	GRCh37	1	16260485	16260491	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAAAA	GAAAAAA	AAAAAC			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	428	487	0	ENST00000375759.3:c.7750_7756delinsAAAAAC	p.Glu2584LysfsTer7	p.E2584Kfs*7	ENST00000375759	NM_015001.2	2584	GAAAAAAca/AAAAACca																																																																														
SPEN	0	MSKCC	GRCh37	1	16260491	16260491	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	428	487	0	ENST00000375759.3:c.7756A>C	p.Thr2586Pro	p.T2586P	ENST00000375759	NM_015001.2	2586	Aca/Cca																																																																														
SPEN	0	MSKCC	GRCh37	1	16260546	16260546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	582	576	0	ENST00000375759.3:c.7811C>A	p.Ala2604Asp	p.A2604D	ENST00000375759	NM_015001.2	2604	gCt/gAt																																																																														
SPEN	0	MSKCC	GRCh37	1	16264028	16264028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	942	864	1	ENST00000375759.3:c.10397G>A	p.Ser3466Asn	p.S3466N	ENST00000375759	NM_015001.2	3466	aGc/aAc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852551	63852551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	1479	467	0	ENST00000279873.7:c.3329C>G	p.Thr1110Ser	p.T1110S	ENST00000279873	NM_032199.2	1110	aCt/aGt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103527783	103527783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	225	397	0	ENST00000355739.4:c.3091G>T	p.Ala1031Ser	p.A1031S	ENST00000355739	NM_000123.3	1031	Gcc/Tcc																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873653	35873653	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	166	358	0	ENST00000216797.5:c.198G>A	p.Trp66Ter	p.W66*	ENST00000216797	NM_020529.2	66	tgG/tgA																																																																														
MGA	0	MSKCC	GRCh37	15	41961164	41961164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	181	335	0	ENST00000219905.7:c.72C>G	p.Phe24Leu	p.F24L	ENST00000219905	NM_001164273.1	24	ttC/ttG																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43714084	43714084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	295	700	0	ENST00000382044.4:c.4069C>T	p.Pro1357Ser	p.P1357S	ENST00000382044	NM_001141980.1	1357	Ccc/Tcc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211387	36211387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	390	821	0	ENST00000222270.7:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000222270	NM_014727.1	380	Gag/Cag																																																																														
REL	0	MSKCC	GRCh37	2	61144012	61144013	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	180	287	0	ENST00000295025.8:c.395_396insG	p.Glu134Ter	p.E134*	ENST00000295025	NM_002908.2	132	gtc/gtGc																																																																														
CUL3	0	MSKCC	GRCh37	2	225371721	225371721	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	216	368	0	ENST00000264414.4:c.884-1G>C		p.X295_splice	ENST00000264414	NM_003590.4	295																																																																															
ROS1	0	MSKCC	GRCh37	6	117679009	117679009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	254	296	0	ENST00000368508.3:c.3812G>A	p.Arg1271Lys	p.R1271K	ENST00000368508	NM_002944.2	1271	aGg/aAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578533	7578553	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TCTTGTTGAGGGCAGGGGAGT	TCTTGTTGAGGGCAGGGGAGT	-			P-0031490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	323	897	0	ENST00000269305.4:c.377_397del	p.Tyr126_Met133delinsLeu	p.Y126_M133delinsL	ENST00000269305	NM_001126112.2	126	tACTCCCCTGCCCTCAACAAGAtg/ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0031491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	89	573	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112174922	112174923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTCT			P-0031491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	17	301	0	ENST00000257430.4:c.3633_3637dup	p.Ser1213CysfsTer54	p.S1213Cfs*54	ENST00000257430	NM_000038.5	1211	atg/aTGTCTtg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026099	71026099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	43	387	0	ENST00000318789.4:c.1523C>T	p.Thr508Met	p.T508M	ENST00000318789	NM_032682.5	508	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	102	791	3	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727451	66727468	+	protein_altering_variant	In_Frame_Del	DEL	AGAAGCAGAAGGTGGGAG	AGAAGCAGAAGGTGGGAG	GAA			P-0031492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	44	556	1	ENST00000307102.5:c.167_184delinsGAA	p.Gln56_Glu62delinsArgLys	p.Q56_E62delinsRK	ENST00000307102	NM_002755.3	56	cAGAAGCAGAAGGTGGGAGaa/cGAAaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	42	574	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974742	21974742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	28	282	0	ENST00000304494.5:c.85C>T	p.Arg29Trp	p.R29W	ENST00000304494	NM_000077.4	29	Cgg/Tgg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974742	21974742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	28	282	0	ENST00000304494.5:c.85C>T	p.Arg29Trp	p.R29W	ENST00000304494	NM_000077.4	29	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	1081	736	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0031498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	11	111	1	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																														
INHBA	0	MSKCC	GRCh37	7	41729496	41729496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	129	661	0	ENST00000242208.4:c.1033T>A	p.Tyr345Asn	p.Y345N	ENST00000242208	NM_002192.2	345	Tat/Aat																																																																														
FLT3	0	MSKCC	GRCh37	13	28592616	28592626	+	frameshift_variant	Frame_Shift_Del	DEL	AACATAGTTGG	AACATAGTTGG	-			P-0031498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	115	496	0	ENST00000241453.7:c.2519_2529del	p.Ser840CysfsTer19	p.S840Cfs*19	ENST00000241453	NM_004119.2	840	tCCAACTATGTT/t																																																																														
ATR	0	MSKCC	GRCh37	3	142217458	142217458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	29	417	0	ENST00000350721.4:c.5539G>C	p.Gly1847Arg	p.G1847R	ENST00000350721	NM_001184.3	1847	Gga/Cga																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860483	151860484	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	117	605	0	ENST00000262189.6:c.10178_10179insT	p.Glu3393AspfsTer9	p.E3393Dfs*9	ENST00000262189	NM_170606.2	3393	gaa/gaTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	232	721	1	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108165756	108165756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	65	439	0	ENST00000278616.4:c.4879C>T	p.Gln1627Ter	p.Q1627*	ENST00000278616	NM_000051.3	1627	Cag/Tag																																																																														
MSH6	0	MSKCC	GRCh37	2	48010631	48010631	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0031500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	126	319	0	ENST00000234420.5:c.259A>G	p.Ser87Gly	p.S87G	ENST00000234420	NM_000179.2	87	Agt/Ggt																																																																														
PRKCI	0	MSKCC	GRCh37	3	169988209	169988209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	40	313	0	ENST00000295797.4:c.451C>T	p.Arg151Cys	p.R151C	ENST00000295797	NM_002740.5	151	Cgt/Tgt																																																																														
STAG2	0	MSKCC	GRCh37	X	123179064	123179064	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	74	337	0	ENST00000218089.9:c.513C>G	p.Phe171Leu	p.F171L	ENST00000218089	NM_001042749.1	171	ttC/ttG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	149	497	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	108	363	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	108	363	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	348	661	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	108	363	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
SESN3	0	MSKCC	GRCh37	11	94923096	94923096	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	47	497	0	ENST00000536441.1:c.372A>C	p.Leu124Phe	p.L124F	ENST00000536441	NM_144665.3	124	ttA/ttC																																																																														
BIRC3	0	MSKCC	GRCh37	11	102198829	102198829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141069802		P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	118	415	0	ENST00000263464.3:c.1000G>A	p.Val334Ile	p.V334I	ENST00000263464	NM_001165.4	334	Gtt/Att																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481622	56481622	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	172	628	3	ENST00000267101.3:c.657T>A	p.Phe219Leu	p.F219L	ENST00000267101	NM_001982.3	219	ttT/ttA																																																																														
CASP8	0	MSKCC	GRCh37	2	202149794	202149794	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	157	553	0	ENST00000358485.4:c.1235A>T	p.Lys412Ile	p.K412I	ENST00000358485	NM_001080125.1	412	aAa/aTa																																																																														
AR	0	MSKCC	GRCh37	X	66765979	66765979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	228	769	0	ENST00000374690.3:c.991G>A	p.Ala331Thr	p.A331T	ENST00000374690	NM_000044.3	331	Gct/Act																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302845	15302845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	173	766	0	ENST00000263388.2:c.605C>T	p.Ala202Val	p.A202V	ENST00000263388	NM_000435.2	202	gCa/gTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	91	439	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	171	258	0				ENST00000310581	NM_198253.2																																																																																
ARID5B	0	MSKCC	GRCh37	10	63850678	63850678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	41	417	0	ENST00000279873.7:c.1456G>A	p.Glu486Lys	p.E486K	ENST00000279873	NM_032199.2	486	Gag/Aag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56181801	56181801	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	36	360	0	ENST00000399503.3:c.4025A>G	p.Lys1342Arg	p.K1342R	ENST00000399503	NM_005921.1	1342	aAa/aGa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458843	120458843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	47	738	1	ENST00000256646.2:c.6502C>A	p.Pro2168Thr	p.P2168T	ENST00000256646	NM_024408.3	2168	Cca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	225	392	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	49	229	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857046	9857046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	29	242	0	ENST00000330684.3:c.4355G>A	p.Arg1452His	p.R1452H	ENST00000330684	NM_001134407.1	1452	cGc/cAc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64136051	64136051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	51	489	0	ENST00000334205.4:c.1312G>A	p.Ala438Thr	p.A438T	ENST00000334205	NM_003942.2	438	Gca/Aca																																																																														
TSHR	0	MSKCC	GRCh37	14	81609993	81609993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	46	245	0	ENST00000298171.2:c.1591C>G	p.Arg531Gly	p.R531G	ENST00000298171	NM_000369.2	531	Cgg/Ggg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858412	9858412	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	34	430	0	ENST00000330684.3:c.2989G>T	p.Glu997Ter	p.E997*	ENST00000330684	NM_001134407.1	997	Gag/Tag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862827	9862827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	119	594	1	ENST00000330684.3:c.2476G>A	p.Ala826Thr	p.A826T	ENST00000330684	NM_001134407.1	826	Gcc/Acc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62319908	62319908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	282	661	0	ENST00000508582.2:c.1822G>T	p.Ala608Ser	p.A608S	ENST00000508582		608	Gcg/Tcg																																																																														
TET2	0	MSKCC	GRCh37	4	106193847	106193847	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	59	356	0	ENST00000380013.4:c.4309G>T	p.Glu1437Ter	p.E1437*	ENST00000380013	NM_001127208.2	1437	Gag/Tag																																																																														
NBN	0	MSKCC	GRCh37	8	90958430	90958430	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	83	309	0	ENST00000265433.3:c.2008A>T	p.Arg670Ter	p.R670*	ENST00000265433	NM_002485.4	670	Aga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	115	416	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	119	623	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																														
NSD1	0	MSKCC	GRCh37	5	176636948	176636948	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	100	611	0	ENST00000439151.2:c.1548A>G	p.Ile516Met	p.I516M	ENST00000439151	NM_022455.4	516	atA/atG																																																																														
ERBB3	0	MSKCC	GRCh37	12	56477655	56477655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142735651		P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	129	572	5	ENST00000267101.3:c.203C>T	p.Thr68Met	p.T68M	ENST00000267101	NM_001982.3	68	aCg/aTg																																																																														
RAD52	0	MSKCC	GRCh37	12	1025927	1025927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	117	580	0	ENST00000358495.3:c.603G>T	p.Glu201Asp	p.E201D	ENST00000358495	NM_134424.2	201	gaG/gaT																																																																														
RNF43	0	MSKCC	GRCh37	17	56438233	56438233	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	121	597	0	ENST00000407977.2:c.760C>T	p.Gln254Ter	p.Q254*	ENST00000407977		254	Cag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101074	41101074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	82	612	0	ENST00000373198.4:c.1282T>C	p.Tyr428His	p.Y428H	ENST00000373198	NM_133170.3	428	Tat/Cat																																																																														
FLT4	0	MSKCC	GRCh37	5	180041122	180041122	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	148	933	0	ENST00000261937.6:c.3277A>T	p.Thr1093Ser	p.T1093S	ENST00000261937	NM_182925.4	1093	Acg/Tcg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	105	442	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MSH3	0	MSKCC	GRCh37	5	79965965	79965965	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	100	593	0	ENST00000265081.6:c.629A>C	p.His210Pro	p.H210P	ENST00000265081	NM_002439.4	210	cAt/cCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	158	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	36	328	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																														
APC	0	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	108	411	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0031527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	90	246	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	338	687	0	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528972	157528972	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	73	384	0	ENST00000346085.5:c.6697T>A	p.Ser2233Thr	p.S2233T	ENST00000346085	NM_020732.3	2233	Tct/Act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	103	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	131	709	3	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123789	11123789	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	66	420	0	ENST00000344626.4:c.2438+1G>A		p.X813_splice	ENST00000344626	NM_003072.3	813																																																																															
CDC73	0	MSKCC	GRCh37	1	193111048	193111048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	196	286	3	ENST00000367435.3:c.581G>T	p.Arg194Ile	p.R194I	ENST00000367435	NM_024529.4	194	aGa/aTa																																																																														
GATA3	0	MSKCC	GRCh37	10	8111467	8111467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	110	490	1	ENST00000346208.3:c.953C>T	p.Ala318Val	p.A318V	ENST00000346208		318	gCg/gTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827327	72827327	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	124	594	2	ENST00000268489.5:c.9254A>T	p.Lys3085Ile	p.K3085I	ENST00000268489	NM_006885.3	3085	aAa/aTa																																																																														
RNF43	0	MSKCC	GRCh37	17	56492917	56492917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	94	207	0	ENST00000407977.2:c.22C>T	p.Gln8Ter	p.Q8*	ENST00000407977		8	Cag/Tag																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740710	58740710	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	128	599	0	ENST00000305921.3:c.1615G>C	p.Glu539Gln	p.E539Q	ENST00000305921	NM_003620.3	539	Gaa/Caa																																																																														
POLD1	0	MSKCC	GRCh37	19	50902283	50902283	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	113	771	0	ENST00000440232.2:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000440232	NM_002691.3	59	Cag/Tag																																																																														
DNMT1	0	MSKCC	GRCh37	19	10249278	10249278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	20	423	0	ENST00000340748.4:c.3904G>A	p.Gly1302Ser	p.G1302S	ENST00000340748		1302	Ggt/Agt																																																																														
ERG	0	MSKCC	GRCh37	21	39755493	39755494	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGGCGTGATAGGAGCCCATGTACGGGAGGTCTGAGGGGTA			P-0031536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	40	495	0	ENST00000288319.7:c.1231_1271dup	p.Pro425ThrfsTer18	p.P425Tfs*18	ENST00000288319	NM_182918.3	424	cac/caTACCCCTCAGACCTCCCGTACATGGGCTCCTATCACGCCCAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	188	578	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0031537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	92	470	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
TSHR	0	MSKCC	GRCh37	14	81610503	81610503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137908024		P-0031537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	91	409	0	ENST00000298171.2:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000298171	NM_000369.2	701	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	47	253	0	ENST00000257430.4:c.3929dup	p.Ile1311AspfsTer4	p.I1311Dfs*4	ENST00000257430	NM_000038.5	1309	gaa/gAaa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520747	176520747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	114	464	0	ENST00000292408.4:c.1490C>A	p.Ala497Asp	p.A497D	ENST00000292408	NM_213647.1	497	gCc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	241	655	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	113	297	0	ENST00000257430.4:c.4127_4128delAT	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	108	413	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713383	40713383	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	335	557	1	ENST00000373198.4:c.4132C>T	p.Arg1378Ter	p.R1378*	ENST00000373198	NM_133170.3	1378	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89711903	89711904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	126	496	0	ENST00000371953.3:c.522dup	p.Val175CysfsTer5	p.V175Cfs*5	ENST00000371953	NM_000314.4	174	tat/taTt																																																																														
IGF1	0	MSKCC	GRCh37	12	102811751	102811751	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	53	629	0	ENST00000307046.8:c.433A>C	p.Lys145Gln	p.K145Q	ENST00000307046	NM_001111285.1	145	Aag/Cag																																																																														
FLT4	0	MSKCC	GRCh37	5	180056285	180056285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	199	636	2	ENST00000261937.6:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000261937	NM_182925.4	320	cGg/cAg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8471043	8471043	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	101	384	0	ENST00000356435.5:c.3456del	p.Lys1153AsnfsTer14	p.K1153Nfs*14	ENST00000356435		1152	ggG/gg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087944	27087944	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000120-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	204	596	0	ENST00000324856.7:c.2231C>G	p.Ser744Ter	p.S744*	ENST00000324856	NM_006015.4	744	tCa/tGa																																																																														
CDK12	0	MSKCC	GRCh37	17	37686863	37686863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000120-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	185	428	0	ENST00000447079.4:c.3767C>T	p.Pro1256Leu	p.P1256L	ENST00000447079	NM_015083.1	1256	cCt/cTt																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42866328	42866328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150389990		P-0000120-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	243	640	0	ENST00000398585.3:c.304G>A	p.Val102Ile	p.V102I	ENST00000398585	NM_001135099.1	102	Gtc/Atc																																																																														
TSC2	0	MSKCC	GRCh37	16	2122880	2122880	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000120-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	237	659	1	ENST00000219476.3:c.2251C>T	p.Arg751Ter	p.R751*	ENST00000219476	NM_000548.3	751	Cga/Tga																																																																														
IRS2	0	MSKCC	GRCh37	13	110437399	110437399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000120-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	65	187	0	ENST00000375856.3:c.1002C>G	p.Ser334Arg	p.S334R	ENST00000375856	NM_003749.2	334	agC/agG																																																																														
RTEL1	0	MSKCC	GRCh37	20	62303963	62303963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000120-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			747	220	578	0	ENST00000508582.2:c.826G>C	p.Ala276Pro	p.A276P	ENST00000508582		276	Gct/Cct																																																																														
KDR	0	MSKCC	GRCh37	4	55948755	55948781	+	inframe_deletion	In_Frame_Del	DEL	TTTACACTCACAGGCCGGCTCTTTCGC	TTTACACTCACAGGCCGGCTCTTTCGC	-			P-0000120-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	72	498	0	ENST00000263923.4:c.3684_3710del	p.Arg1229_Lys1237del	p.R1229_K1237del	ENST00000263923	NM_002253.2	1228	aaGCGAAAGAGCCGGCCTGTGAGTGTAAAa/aaa																																																																														
TERT	0	MSKCC	GRCh37	5	1294541	1294541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000120-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	62	279	0	ENST00000310581.5:c.460G>C	p.Ala154Pro	p.A154P	ENST00000310581	NM_198253.2	154	Gca/Cca																																																																														
ETV1	0	MSKCC	GRCh37	7	13971315	13971315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000120-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	151	466	0	ENST00000405192.2:c.614G>C	p.Arg205Thr	p.R205T	ENST00000405192	NM_001163147.1	205	aGg/aCg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435769	110435769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000120-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			143	15	59	0	ENST00000375856.3:c.2632G>C	p.Glu878Gln	p.E878Q	ENST00000375856	NM_003749.2	878	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	59	655	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0031009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	342	790	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
LATS1	0	MSKCC	GRCh37	6	150001340	150001340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	148	630	0	ENST00000253339.5:c.2264A>G	p.Asp755Gly	p.D755G	ENST00000253339		755	gAt/gGt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36220074	36220075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGTA			P-0031009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	371	658	0	ENST00000222270.7:c.4795_4799dup	p.Ile1601CysfsTer47	p.I1601Cfs*47	ENST00000222270	NM_014727.1	1598	-/TTGTA																																																																														
PTCH1	0	MSKCC	GRCh37	9	98218659	98218659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	47	415	0	ENST00000331920.6:c.3205G>T	p.Gly1069Cys	p.G1069C	ENST00000331920	NM_000264.3	1069	Ggc/Tgc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891277	101891277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	101	602	1	ENST00000374994.4:c.238C>T	p.Arg80Ter	p.R80*	ENST00000374994	NM_004612.2	80	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106957	27106965	+	inframe_deletion	In_Frame_Del	DEL	GGCAGTATC	GGCAGTATC	-			P-0031012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	89	473	0	ENST00000324856.7:c.6572_6580del	p.Ser2191_Gly2193del	p.S2191_G2193del	ENST00000324856	NM_006015.4	2190	GGCAGTATC/-																																																																														
STAT5B	0	MSKCC	GRCh37	17	40353848	40353848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	107	508	0	ENST00000293328.3:c.2272G>A	p.Asp758Asn	p.D758N	ENST00000293328	NM_012448.3	758	Gat/Aat																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528075	157528075	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	93	506	0	ENST00000346085.5:c.5800A>T	p.Ile1934Phe	p.I1934F	ENST00000346085	NM_020732.3	1934	Atc/Ttc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0031013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	48	574	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0031013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	37	558	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	34	572	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
MED12	0	MSKCC	GRCh37	X	70339328	70339328	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0031013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	23	468	0	ENST00000374080.3:c.204+1G>T		p.X68_splice	ENST00000374080		68																																																																															
ESR1	0	MSKCC	GRCh37	6	152163866	152163866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	55	481	0	ENST00000206249.3:c.587A>G	p.His196Arg	p.H196R	ENST00000206249	NM_000125.3	196	cAt/cGt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828912	72828912	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	34	578	1	ENST00000268489.5:c.7669C>T	p.Gln2557Ter	p.Q2557*	ENST00000268489	NM_006885.3	2557	Cag/Tag																																																																														
ACVR1	0	MSKCC	GRCh37	2	158622517	158622517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	35	515	0	ENST00000263640.3:c.982G>A	p.Gly328Arg	p.G328R	ENST00000263640	NM_001105.4	328	Ggg/Agg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	85	412	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
RB1	0	MSKCC	GRCh37	13	48919331	48919331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	41	104	0	ENST00000267163.4:c.496G>T	p.Glu166Ter	p.E166*	ENST00000267163	NM_000321.2	166	Gaa/Taa																																																																														
STK11	0	MSKCC	GRCh37	19	1221229	1221229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	207	638	0	ENST00000326873.7:c.752G>A	p.Gly251Asp	p.G251D	ENST00000326873	NM_000455.4	251	gGt/gAt																																																																														
FLT3	0	MSKCC	GRCh37	13	28623821	28623821	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	101	469	0	ENST00000241453.7:c.833A>C	p.Asn278Thr	p.N278T	ENST00000241453	NM_004119.2	278	aAc/aCc																																																																														
ESR1	0	MSKCC	GRCh37	6	152382171	152382171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	89	374	0	ENST00000206249.3:c.1281G>A	p.Met427Ile	p.M427I	ENST00000206249	NM_000125.3	427	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	49	439	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	49	419	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	49	351	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591977	48591977	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	10	230	0	ENST00000342988.3:c.1139+1G>T		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																															
ARID1A	0	MSKCC	GRCh37	1	27100988	27100988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	42	565	0	ENST00000324856.7:c.4270C>T	p.Gln1424Ter	p.Q1424*	ENST00000324856	NM_006015.4	1424	Cag/Tag																																																																														
PGR	0	MSKCC	GRCh37	11	100933303	100933303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	17	528	0	ENST00000325455.5:c.2087C>T	p.Pro696Leu	p.P696L	ENST00000325455	NM_001202474.3	696	cCa/cTa																																																																														
SUZ12	0	MSKCC	GRCh37	17	30322633	30322633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	35	527	0	ENST00000322652.5:c.1646G>T	p.Gly549Val	p.G549V	ENST00000322652	NM_015355.2	549	gGg/gTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302395	15302395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	24	776	0	ENST00000263388.2:c.876C>G	p.Phe292Leu	p.F292L	ENST00000263388	NM_000435.2	292	ttC/ttG																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793431	242793431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	50	568	1	ENST00000334409.5:c.646G>T	p.Val216Leu	p.V216L	ENST00000334409	NM_005018.2	216	Gtg/Ttg																																																																														
SETD2	0	MSKCC	GRCh37	3	47098368	47098368	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	33	449	0	ENST00000409792.3:c.6906T>A	p.Cys2302Ter	p.C2302*	ENST00000409792	NM_014159.6	2302	tgT/tgA																																																																														
SETD2	0	MSKCC	GRCh37	3	47164136	47164136	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	15	345	0	ENST00000409792.3:c.1990A>T	p.Arg664Ter	p.R664*	ENST00000409792	NM_014159.6	664	Aga/Tga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8507435	8507435	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	16	223	0	ENST00000356435.5:c.1544-1G>T		p.X515_splice	ENST00000356435		515																																																																															
KMT2A	0	MSKCC	GRCh37	11	118392119	118392119	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	176	528	0	ENST00000534358.1:c.11630A>G	p.Tyr3877Cys	p.Y3877C	ENST00000534358	NM_005933.3	3877	tAt/tGt																																																																														
FLT3	0	MSKCC	GRCh37	13	28602354	28602354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	203	648	0	ENST00000241453.7:c.2014G>C	p.Glu672Gln	p.E672Q	ENST00000241453	NM_004119.2	672	Gag/Cag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346466	89346466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	264	788	0	ENST00000301030.4:c.6484C>A	p.Pro2162Thr	p.P2162T	ENST00000301030	NM_001256183.1	2162	Cct/Act																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868282	37868282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	542	715	0	ENST00000269571.5:c.1003A>T	p.Ser335Cys	p.S335C	ENST00000269571		335	Agc/Tgc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610399	10610399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	289	836	1	ENST00000171111.5:c.311G>T	p.Ser104Ile	p.S104I	ENST00000171111	NM_203500.1	104	aGc/aTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098381	11098382	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	233	551	1	ENST00000344626.4:c.900_901del	p.Lys301AlafsTer85	p.K301Afs*85	ENST00000344626	NM_003072.3	300	cAG/c																																																																														
FYN	0	MSKCC	GRCh37	6	112017563	112017563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	207	646	0	ENST00000368678.4:c.950A>G	p.Lys317Arg	p.K317R	ENST00000368678		317	aAg/aGg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151900096	151900096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	186	596	0	ENST00000262189.6:c.4015G>A	p.Glu1339Lys	p.E1339K	ENST00000262189	NM_170606.2	1339	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	268	565	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	437	503	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	179	447	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
MAX	0	MSKCC	GRCh37	14	65544655	65544655	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	541	567	0	ENST00000358664.4:c.271C>T	p.Gln91Ter	p.Q91*	ENST00000358664	NM_002382.4	91	Cag/Tag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832398	72832398	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	223	552	0	ENST00000268489.5:c.4183G>C	p.Asp1395His	p.D1395H	ENST00000268489	NM_006885.3	1395	Gat/Cat																																																																														
SPEN	0	MSKCC	GRCh37	1	16255875	16255875	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	235	564	0	ENST00000375759.3:c.3140G>C	p.Arg1047Thr	p.R1047T	ENST00000375759	NM_015001.2	1047	aGa/aCa																																																																														
RIT1	0	MSKCC	GRCh37	1	155870224	155870224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	585	724	0	ENST00000368323.3:c.615G>C	p.Lys205Asn	p.K205N	ENST00000368323	NM_006912.5	205	aaG/aaC																																																																														
SOCS1	0	MSKCC	GRCh37	16	11348903	11348903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	145	322	0	ENST00000332029.2:c.433G>T	p.Asp145Tyr	p.D145Y	ENST00000332029	NM_003745.1	145	Gac/Tac																																																																														
MAPK3	0	MSKCC	GRCh37	16	30128588	30128588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	214	536	0	ENST00000263025.4:c.794C>T	p.Ser265Phe	p.S265F	ENST00000263025	NM_002746.2	265	tCc/tTc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15974932	15974932	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	222	578	0	ENST00000268712.3:c.3943C>G	p.Pro1315Ala	p.P1315A	ENST00000268712	NM_006311.3	1315	Ccc/Gcc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15974965	15974965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	185	548	0	ENST00000268712.3:c.3910A>G	p.Thr1304Ala	p.T1304A	ENST00000268712	NM_006311.3	1304	Aca/Gca																																																																														
BRCA1	0	MSKCC	GRCh37	17	41226464	41226464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	263	687	0	ENST00000357654.3:c.4559G>C	p.Arg1520Thr	p.R1520T	ENST00000357654	NM_007294.3	1520	aGa/aCa																																																																														
PMAIP1	0	MSKCC	GRCh37	18	57567440	57567440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	218	422	0	ENST00000316660.6:c.31C>T	p.Gln11Ter	p.Q11*	ENST00000316660	NM_021127.2	11	Caa/Taa																																																																														
TET2	0	MSKCC	GRCh37	4	106157256	106157256	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	260	641	0	ENST00000380013.4:c.2157del	p.Leu719PhefsTer32	p.L719Ffs*32	ENST00000380013	NM_001127208.2	719	ttG/tt																																																																														
TAP1	0	MSKCC	GRCh37	6	32815823	32815823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	254	583	0	ENST00000354258.4:c.1793G>A	p.Gly598Glu	p.G598E	ENST00000354258	NM_000593.5	598	gGa/gAa																																																																														
HGF	0	MSKCC	GRCh37	7	81359096	81359096	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	139	425	0	ENST00000222390.5:c.866-1G>T		p.X289_splice	ENST00000222390	NM_000601.4	289																																																																															
NOTCH1	0	MSKCC	GRCh37	9	139404376	139404376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	280	735	0	ENST00000277541.6:c.2778C>G	p.Ile926Met	p.I926M	ENST00000277541	NM_017617.3	926	atC/atG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	589	622	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	285	733	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26046026	26046026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	179	458	1	ENST00000540144.1:c.388C>T	p.Arg130Cys	p.R130C	ENST00000540144	NM_003531.2	130	Cgc/Tgc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71939473	71939473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	293	752	0	ENST00000298229.2:c.328G>C	p.Val110Leu	p.V110L	ENST00000298229	NM_001567.3	110	Gtg/Ctg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18800822	18800822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	150	443	0	ENST00000266497.5:c.4198G>A	p.Glu1400Lys	p.E1400K	ENST00000266497		1400	Gaa/Aaa																																																																														
STK11	0	MSKCC	GRCh37	19	1223138	1223138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	270	651	0	ENST00000326873.7:c.1075G>A	p.Asp359Asn	p.D359N	ENST00000326873	NM_000455.4	359	Gac/Aac																																																																														
TET2	0	MSKCC	GRCh37	4	106195611	106196633	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACATTCCCGAATCTTACATAATAAATCTTATTTTAATTATTTAGCAAATTCCATTGCATGCCAGGCAATGAAGAAGTAAGTAAAATAAAACATTTTCCTTCCCATTTAGGAATTTACTTACCAGTGGGGGTGAAGAGAGGGCTAAAAACATAACTATAATACATTGTGAGTATTGCTTTATCAGATCTATCTTTGCAGTTGAGTATTACAAAAGCACTAGAAGATGAGGTCAAAGCGGTCCCTTGAGGAAGGGATGACTACACCAAGGAAGGATAGGGAGAGAGGGAGGAAAAGGGAGGCACTTCAAGCAGAGGCATGTTCAGAAGTTCCAAAGAACATTTTGCTCTCAATGGAATGGCTTTGGATGTTTATTACATTTTTTTTTTCACTAAGTTTTGTATTTCTAATGCCTTAGACAAAAAATTGTGCTGGACAATGATCAGAACCCTGACTTTGCTCTTATCTTTGCTTAATGGGTGTCGTATATCACTAGTGGAGTTTCTTACCTACATTTAAGTATCCTCACTAGCCTTCATAAAATAATCATCAACATCAAAGATACCTGTTTCTGTTCTCTCTTACCCTGTCCACAGAACTTTTGCGACTTTCAGGACCAGTCATGCAGCAGTCCCAGCAGCCCCAGCCTCTACAGAAGCAGCCACCACAGCCCCAGCAGCAGCAGAGACCCCAGCAGCAGCAGCCACATCACCCTCAGACAGAGTCTGTCAACTCTTATTCTGCTTCTGGATCCACCAATCCATACATGAGACGGCCCAATCCAGTTAGTCCTTATCCAAACTCTTCACACACTTCAGATATCTATGGAAGCACCAGCCCTATGAACTTCTATTCCACCTCATCTCAAGCTGCAGGTTCATATTTGAATTCTTCTAATCCCATGAACCCTTACCCTGGGCTTTTGAATCAGAATACCCAATATCCATCATATCAATGCAATGGAAACCTATCAGTGGACAACTGCTCCCCATATCTGGGTTCCTATTCTCCCCAGTCTCAGCCGA	AACATTCCCGAATCTTACATAATAAATCTTATTTTAATTATTTAGCAAATTCCATTGCATGCCAGGCAATGAAGAAGTAAGTAAAATAAAACATTTTCCTTCCCATTTAGGAATTTACTTACCAGTGGGGGTGAAGAGAGGGCTAAAAACATAACTATAATACATTGTGAGTATTGCTTTATCAGATCTATCTTTGCAGTTGAGTATTACAAAAGCACTAGAAGATGAGGTCAAAGCGGTCCCTTGAGGAAGGGATGACTACACCAAGGAAGGATAGGGAGAGAGGGAGGAAAAGGGAGGCACTTCAAGCAGAGGCATGTTCAGAAGTTCCAAAGAACATTTTGCTCTCAATGGAATGGCTTTGGATGTTTATTACATTTTTTTTTTCACTAAGTTTTGTATTTCTAATGCCTTAGACAAAAAATTGTGCTGGACAATGATCAGAACCCTGACTTTGCTCTTATCTTTGCTTAATGGGTGTCGTATATCACTAGTGGAGTTTCTTACCTACATTTAAGTATCCTCACTAGCCTTCATAAAATAATCATCAACATCAAAGATACCTGTTTCTGTTCTCTCTTACCCTGTCCACAGAACTTTTGCGACTTTCAGGACCAGTCATGCAGCAGTCCCAGCAGCCCCAGCCTCTACAGAAGCAGCCACCACAGCCCCAGCAGCAGCAGAGACCCCAGCAGCAGCAGCCACATCACCCTCAGACAGAGTCTGTCAACTCTTATTCTGCTTCTGGATCCACCAATCCATACATGAGACGGCCCAATCCAGTTAGTCCTTATCCAAACTCTTCACACACTTCAGATATCTATGGAAGCACCAGCCCTATGAACTTCTATTCCACCTCATCTCAAGCTGCAGGTTCATATTTGAATTCTTCTAATCCCATGAACCCTTACCCTGGGCTTTTGAATCAGAATACCCAATATCCATCATATCAATGCAATGGAAACCTATCAGTGGACAACTGCTCCCCATATCTGGGTTCCTATTCTCCCCAGTCTCAGCCGA	-			P-0031304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1	72	0	0	ENST00000380013.4:c.4538-594_4966del		p.X1513_splice	ENST00000380013	NM_001127208.2	1513																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0031305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	89	666	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67592132	67592132	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	41	382	0	ENST00000274335.5:c.1948G>C	p.Glu650Gln	p.E650Q	ENST00000274335		650	Gag/Cag																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0008068-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	154	249	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0008068-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	338	625	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008068-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	189	498	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
CIC	0	MSKCC	GRCh37	19	42791533	42791533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008068-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	211	717	0	ENST00000575354.2:c.514C>T	p.Gln172Ter	p.Q172*	ENST00000575354	NM_015125.3	172	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578500	7578500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008068-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			336	540	811	1	ENST00000269305.4:c.430del	p.Gln144SerfsTer26	p.Q144Sfs*26	ENST00000269305	NM_001126112.2	144	Cag/ag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821734	72821734	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008068-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	45	462	0	ENST00000268489.5:c.10441A>G	p.Arg3481Gly	p.R3481G	ENST00000268489	NM_006885.3	3481	Agg/Ggg																																																																														
RRAS	0	MSKCC	GRCh37	19	50140366	50140366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008068-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	173	611	1	ENST00000246792.3:c.175G>A	p.Asp59Asn	p.D59N	ENST00000246792	NM_006270.3	59	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	636	537	0	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351367	89351367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	251	718	0	ENST00000301030.4:c.1583G>A	p.Ser528Asn	p.S528N	ENST00000301030	NM_001256183.1	528	aGc/aAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8404612	8404612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	47	356	0	ENST00000356435.5:c.4135G>T	p.Val1379Leu	p.V1379L	ENST00000356435		1379	Gta/Tta																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128419953	128419953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	211	585	3	ENST00000265960.3:c.475G>A	p.Glu159Lys	p.E159K	ENST00000265960	NM_001006617.1	159	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	90	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	164	706	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729968	30729968	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	66	399	0	ENST00000359013.4:c.1564C>T	p.Arg522Ter	p.R522*	ENST00000359013	NM_001024847.2	522	Cga/Tga																																																																														
ATR	0	MSKCC	GRCh37	3	142281421	142281421	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	48	641	0	ENST00000350721.4:c.823G>T	p.Glu275Ter	p.E275*	ENST00000350721	NM_001184.3	275	Gaa/Taa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970953	21970992	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGG	CCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGG	-			P-0031025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	81	640	0	ENST00000304494.5:c.366_405del	p.His123AlafsTer10	p.H123Afs*10	ENST00000304494	NM_000077.4	122	ggCCATCGCGATGTCGCACGGTACCTGCGCGCGGCTGCGGGG/gg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970953	21970992	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGG	CCCCGCAGCCGCGCGCAGGTACCGTGCGACATCGCGATGG	-			P-0031025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	81	640	0	ENST00000304494.5:c.366_405del	p.His123AlafsTer10	p.H123Afs*10	ENST00000304494	NM_000077.4	122	ggCCATCGCGATGTCGCACGGTACCTGCGCGCGGCTGCGGGG/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	247	472	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	629	606	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0031177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	372	552	1				ENST00000310581	NM_198253.2																																																																																
TNFRSF14	0	MSKCC	GRCh37	1	2494690	2494690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	187	712	0	ENST00000355716.4:c.830C>T	p.Thr277Met	p.T277M	ENST00000355716	NM_003820.2	277	aCg/aTg																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0031177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	135	536	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
DICER1	0	MSKCC	GRCh37	14	95579443	95579443	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	254	469	0	ENST00000343455.3:c.2026C>T	p.Arg676Ter	p.R676*	ENST00000343455	NM_177438.2	676	Cga/Tga																																																																														
IRS1	0	MSKCC	GRCh37	2	227662554	227662554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	177	521	2	ENST00000305123.5:c.901C>T	p.Arg301Cys	p.R301C	ENST00000305123	NM_005544.2	301	Cgc/Tgc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100912	41100912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	242	614	1	ENST00000373198.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000373198	NM_133170.3	482	Gaa/Aaa																																																																														
RAD54L	0	MSKCC	GRCh37	1	46743845	46743845	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	181	718	0	ENST00000371975.4:c.2135A>C	p.Lys712Thr	p.K712T	ENST00000371975	NM_003579.3	712	aAg/aCg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433032	49433032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	167	763	5	ENST00000301067.7:c.8339C>T	p.Thr2780Met	p.T2780M	ENST00000301067	NM_003482.3	2780	aCg/aTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110434962	110435072	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCCCCCCTGCGGGTCTGCGCGGATGACCTTGGCGCCGCGGTGGGGGTCCGGGGGCTGGCTGGCCTGCAGGAAGGCCTCGACTCCCGACACCTGCTCCATGA	GGCGGCGGCGGCCCCCCTGCGGGTCTGCGCGGATGACCTTGGCGCCGCGGTGGGGGTCCGGGGGCTGGCTGGCCTGCAGGAAGGCCTCGACTCCCGACACCTGCTCCATGA	-			P-0031177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	199	817	0	ENST00000375856.3:c.3329_3439del	p.Leu1110_Arg1146del	p.L1110_R1146del	ENST00000375856	NM_003749.2	1110	cTCATGGAGCAGGTGTCGGGAGTCGAGGCCTTCCTGCAGGCCAGCCAGCCCCCGGACCCCCACCGCGGCGCCAAGGTCATCCGCGCAGACCCGCAGGGGGGCCGCCGCCGCCac/cac																																																																														
RARA	0	MSKCC	GRCh37	17	38512270	38512270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	173	707	1	ENST00000254066.5:c.1181G>A	p.Arg394Gln	p.R394Q	ENST00000254066	NM_000964.3	394	cGg/cAg																																																																														
MSH2	0	MSKCC	GRCh37	2	47690238	47690238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	163	631	0	ENST00000233146.2:c.1455G>A	p.Met485Ile	p.M485I	ENST00000233146	NM_000251.2	485	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	236	621	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	206	818	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	188	635	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	354	658	3	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	210	869	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	105	409	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	147	603	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18278074	18278074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	216	924	1	ENST00000222254.8:c.1694C>T	p.Pro565Leu	p.P565L	ENST00000222254	NM_005027.3	565	cCg/cTg																																																																														
TBX3	0	MSKCC	GRCh37	12	115120708	115120708	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	212	931	0	ENST00000257566.3:c.298G>T	p.Glu100Ter	p.E100*	ENST00000257566	NM_016569.3	100	Gag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419974	41419974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	116	706	0	ENST00000373198.4:c.347G>T	p.Ser116Ile	p.S116I	ENST00000373198	NM_133170.3	116	aGc/aTc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713813	30713849	+	protein_altering_variant	In_Frame_Del	DEL	CTCAAGAGCTCCAATATCCTCGTGAAGAACGACCTAA	CTCAAGAGCTCCAATATCCTCGTGAAGAACGACCTAA	GATG			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	112	860	4	ENST00000359013.4:c.1213_1249delinsGATG	p.Leu405_Thr417delinsAspAla	p.L405_T417delinsDA	ENST00000359013	NM_001024847.2	405	CTCAAGAGCTCCAATATCCTCGTGAAGAACGACCTAAcc/GATGcc																																																																														
SMO	0	MSKCC	GRCh37	7	128829221	128829221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	112	527	1	ENST00000249373.3:c.229G>A	p.Val77Met	p.V77M	ENST00000249373	NM_005631.4	77	Gtg/Atg																																																																														
BTK	0	MSKCC	GRCh37	X	100630190	100630190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	293	790	0	ENST00000308731.7:c.83G>A	p.Arg28His	p.R28H	ENST00000308731	NM_000061.2	28	cGc/cAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092740	27092740	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	112	516	0	ENST00000324856.7:c.2765delG	p.Gly922AlafsTer2	p.G922Afs*2	ENST00000324856	NM_006015.4	921	Ggg/gg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098954	178098954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	105	382	0	ENST00000397062.3:c.91G>A	p.Gly31Arg	p.G31R	ENST00000397062	NM_006164.4	31	Gga/Aga																																																																														
TP53	0	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	361	822	3	ENST00000269305.4:c.743_744delinsTT	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGG/cTT																																																																														
TERT	0	MSKCC	GRCh37	5	1294285	1294285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	377	672	0	ENST00000310581.5:c.716G>A	p.Arg239Lys	p.R239K	ENST00000310581	NM_198253.2	239	aGg/aAg																																																																														
SPEN	0	MSKCC	GRCh37	1	16259667	16259667	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	186	715	1	ENST00000375759.3:c.6932C>A	p.Ser2311Ter	p.S2311*	ENST00000375759	NM_015001.2	2311	tCa/tAa																																																																														
RFWD2	0	MSKCC	GRCh37	1	176085797	176085798	+	missense_variant	Missense_Mutation	DNP	TC	TC	GA			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	92	642	0	ENST00000367669.3:c.988_989inv	p.Glu330Ser	p.E330S	ENST00000367669	NM_022457.5	330	GAa/TCa																																																																														
SHOC2	0	MSKCC	GRCh37	10	112769486	112769486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	73	638	0	ENST00000369452.4:c.1438A>G	p.Asn480Asp	p.N480D	ENST00000369452	NM_007373.3	480	Aac/Gac																																																																														
FGFR2	0	MSKCC	GRCh37	10	123298165	123298165	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	163	642	0	ENST00000358487.5:c.689C>G	p.Thr230Ser	p.T230S	ENST00000358487	NM_000141.4	230	aCc/aGc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56492580	56492580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	339	678	0	ENST00000267101.3:c.2730G>T	p.Glu910Asp	p.E910D	ENST00000267101	NM_001982.3	910	gaG/gaT																																																																														
ERCC5	0	MSKCC	GRCh37	13	103504612	103504612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	105	341	0	ENST00000355739.4:c.233G>T	p.Gly78Val	p.G78V	ENST00000355739	NM_000123.3	78	gGg/gTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288709	15288710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	48	101	0	ENST00000263388.2:c.4029dup	p.Cys1344LeufsTer219	p.C1344Lfs*219	ENST00000263388	NM_000435.2	1343	-/C																																																																														
PMS1	0	MSKCC	GRCh37	2	190742106	190742106	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	199	668	0	ENST00000441310.2:c.2743T>A	p.Cys915Ser	p.C915S	ENST00000441310	NM_000534.4	915	Tgt/Agt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499355	89499355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	205	486	0	ENST00000336596.2:c.2525G>C	p.Arg842Pro	p.R842P	ENST00000336596	NM_005233.5	842	cGa/cCa																																																																														
LYN	0	MSKCC	GRCh37	8	56864629	56864629	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	123	730	0	ENST00000519728.1:c.592C>G	p.Arg198Gly	p.R198G	ENST00000519728	NM_002350.3	198	Cga/Gga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971045	21971045	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	298	574	0	ENST00000304494.5:c.313del	p.Asp105ThrfsTer41	p.D105Tfs*41	ENST00000304494	NM_000077.4	105	Gac/ac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971045	21971045	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	298	574	0	ENST00000304494.5:c.313del	p.Asp105ThrfsTer41	p.D105Tfs*41	ENST00000304494	NM_000077.4	105	Gac/ac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971045	21971045	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	298	574	0	ENST00000304494.5:c.313del	p.Asp105ThrfsTer41	p.D105Tfs*41	ENST00000304494	NM_000077.4	105	Gac/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	331	529	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445271	49445271	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200451733		P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	412	724	1	ENST00000301067.7:c.2195C>T	p.Pro732Leu	p.P732L	ENST00000301067	NM_003482.3	732	cCg/cTg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060799	38060799	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	406	798	0	ENST00000250448.2:c.1190A>G	p.Asn397Ser	p.N397S	ENST00000250448	NM_004496.3	397	aAc/aGc																																																																														
CD276	0	MSKCC	GRCh37	15	73994907	73994907	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	48	77	0	ENST00000318443.5:c.391A>G	p.Ser131Gly	p.S131G	ENST00000318443	NM_001024736.1	131	Agc/Ggc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99251007	99251007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	266	468	0	ENST00000268035.6:c.311C>T	p.Thr104Met	p.T104M	ENST00000268035	NM_000875.3	104	aCg/aTg																																																																														
AURKB	0	MSKCC	GRCh37	17	8108663	8108663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	335	540	1	ENST00000585124.1:c.732G>T	p.Met244Ile	p.M244I	ENST00000585124	NM_004217.3	244	atG/atT																																																																														
BRIP1	0	MSKCC	GRCh37	17	59761006	59761006	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	290	502	0	ENST00000259008.2:c.3401C>G	p.Pro1134Arg	p.P1134R	ENST00000259008	NM_032043.2	1134	cCt/cGt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610330	10610330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	759	714	1	ENST00000171111.5:c.380G>T	p.Gly127Val	p.G127V	ENST00000171111	NM_203500.1	127	gGt/gTt																																																																														
ALK	0	MSKCC	GRCh37	2	29543638	29543638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	308	549	0	ENST00000389048.3:c.1525G>A	p.Ala509Thr	p.A509T	ENST00000389048	NM_004304.4	509	Gcc/Acc																																																																														
PAK7	0	MSKCC	GRCh37	20	9520192	9520192	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	253	427	1	ENST00000353224.5:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000353224	NM_177990.2	693	Gaa/Taa																																																																														
KIT	0	MSKCC	GRCh37	4	55602910	55602910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	492	368	0	ENST00000288135.5:c.2620C>A	p.Pro874Thr	p.P874T	ENST00000288135	NM_000222.2	874	Ccg/Acg																																																																														
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0022584-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	301	652	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	54	572	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	417	538	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	805	701	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
APC	0	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0031221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	386	336	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137283	64137283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	269	717	2	ENST00000334205.4:c.1715C>T	p.Thr572Met	p.T572M	ENST00000334205	NM_003942.2	572	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434863	49434864	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	510	904	0	ENST00000301067.7:c.6689dup	p.Pro2231ThrfsTer12	p.P2231Tfs*12	ENST00000301067	NM_003482.3	2230	cca/ccCa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32185035	32185035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	217	703	0	ENST00000375023.3:c.1633G>A	p.Gly545Ser	p.G545S	ENST00000375023	NM_004557.3	545	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	201	724	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0031228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	264	890	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435287	49435287	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	229	877	0	ENST00000301067.7:c.6266del	p.Lys2089ArgfsTer5	p.K2089Rfs*5	ENST00000301067	NM_003482.3	2089	aAg/ag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	231	430	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	134	295	0				ENST00000310581	NM_198253.2																																																																																
TMPRSS2	0	MSKCC	GRCh37	21	42866297	42866297	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61735793		P-0031250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	51	614	0	ENST00000398585.3:c.335C>T	p.Thr112Ile	p.T112I	ENST00000398585	NM_001135099.1	112	aCa/aTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	60	509	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0031253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	41	345	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	62	419	1	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0031253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	43	342	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
ELF3	0	MSKCC	GRCh37	1	201982395	201982395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	256	878	1	ENST00000359651.3:c.774G>A	p.Trp258Ter	p.W258*	ENST00000359651		258	tgG/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	49	580	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	64	571	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	64	571	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578369	7578370	+	splice_donor_variant	Splice_Site	INS	-	-	CCATCGTTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCG			P-0031263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	26	689	0	ENST00000269305.4:c.559+1_559+2insCGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAACGATGG		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971035	21971036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0031263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	47	411	0	ENST00000304494.5:c.321_322dup	p.Asp108AlafsTer39	p.D108Afs*39	ENST00000304494	NM_000077.4	108	gat/gCGat																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971035	21971036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0031263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	47	411	0	ENST00000304494.5:c.321_322dup	p.Asp108AlafsTer39	p.D108Afs*39	ENST00000304494	NM_000077.4	108	gat/gCGat																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929443	44929452	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGTGGGCT	ACAGTGGGCT	-			P-0031263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	55	820	0	ENST00000377967.4:c.2546_2555del	p.Ser849ThrfsTer15	p.S849Tfs*15	ENST00000377967	NM_021140.2	848	cACAGTGGGCTa/ca																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	1353	457	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
TOP1	0	MSKCC	GRCh37	20	39713203	39713203	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	173	407	0	ENST00000361337.2:c.609G>A	p.Trp203Ter	p.W203*	ENST00000361337	NM_003286.2	203	tgG/tgA																																																																														
EGFR	0	MSKCC	GRCh37	7	55242470	55242470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	102	617	0	ENST00000275493.2:c.2240T>C	p.Leu747Ser	p.L747S	ENST00000275493	NM_005228.3	747	tTa/tCa																																																																														
EGFR	0	MSKCC	GRCh37	7	55241706	55241707	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0031267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	90	747	1	ENST00000275493.2:c.2154_2155delinsTT	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	718	ctGGgc/ctTTgc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972740	32972740	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	52	623	0	ENST00000380152.3:c.10090T>G	p.Ser3364Ala	p.S3364A	ENST00000380152		3364	Tct/Gct																																																																														
HIST1H3A	0	MSKCC	GRCh37	6	26020983	26020983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	50	456	0	ENST00000357647.3:c.266C>A	p.Ala89Asp	p.A89D	ENST00000357647	NM_003529.2	89	gCt/gAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	188	654	1	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	114	571	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	96	425	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	183	907	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TET1	0	MSKCC	GRCh37	10	70412302	70412302	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	141	509	0	ENST00000373644.4:c.4412A>G	p.Tyr1471Cys	p.Y1471C	ENST00000373644	NM_030625.2	1471	tAc/tGc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	87	483	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	111	426	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	109	372	3	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
MGA	0	MSKCC	GRCh37	15	42059170	42059170	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	118	555	5	ENST00000219905.7:c.8895delC	p.Thr2966ProfsTer4	p.T2966Pfs*4	ENST00000219905	NM_001164273.1	2964	Ccc/cc																																																																														
NUP93	0	MSKCC	GRCh37	16	56855485	56855485	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79070284		P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	135	555	0	ENST00000308159.5:c.634G>A	p.Val212Ile	p.V212I	ENST00000308159	NM_014669.4	212	Gtc/Atc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251647	212251647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	104	518	0	ENST00000342788.4:c.3412G>A	p.Glu1138Lys	p.E1138K	ENST00000342788	NM_005235.2	1138	Gaa/Aaa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62319391	62319391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	260	867	2	ENST00000508582.2:c.1655C>T	p.Ala552Val	p.A552V	ENST00000508582		552	gCg/gTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187549713	187549713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	30	561	1	ENST00000441802.2:c.4528G>A	p.Ala1510Thr	p.A1510T	ENST00000441802	NM_005245.3	1510	Gca/Aca																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134987	41134987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	58	334	0	ENST00000379561.5:c.641G>A	p.Arg214His	p.R214H	ENST00000379561	NM_002015.3	214	cGt/cAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099090	27099091	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	156	698	0	ENST00000324856.7:c.3510_3511del	p.His1170GlnfsTer22	p.H1170Qfs*22	ENST00000324856	NM_006015.4	1169	cCA/c																																																																														
FGF3	0	MSKCC	GRCh37	11	69625302	69625302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	195	956	1	ENST00000334134.2:c.491G>A	p.Arg164His	p.R164H	ENST00000334134	NM_005247.2	164	cGc/cAc																																																																														
GLI1	0	MSKCC	GRCh37	12	57863356	57863356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	224	894	0	ENST00000228682.2:c.1451G>A	p.Gly484Glu	p.G484E	ENST00000228682	NM_005269.2	484	gGa/gAa																																																																														
FLT1	0	MSKCC	GRCh37	13	29008044	29008044	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	107	472	0	ENST00000282397.4:c.725T>A	p.Leu242Ter	p.L242*	ENST00000282397	NM_002019.4	242	tTa/tAa																																																																														
IRS2	0	MSKCC	GRCh37	13	110435208	110435208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	204	565	1	ENST00000375856.3:c.3193G>A	p.Asp1065Asn	p.D1065N	ENST00000375856	NM_003749.2	1065	Gac/Aac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829114	72829115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	99	622	1	ENST00000268489.5:c.7466dup	p.Pro2490SerfsTer44	p.P2490Sfs*44	ENST00000268489	NM_006885.3	2489	cct/ccCt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72923808	72923808	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	167	779	0	ENST00000268489.5:c.3270C>A	p.Cys1090Ter	p.C1090*	ENST00000268489	NM_006885.3	1090	tgC/tgA																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15298713	15298713	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	50	993	0	ENST00000263388.2:c.1585T>C	p.Tyr529His	p.Y529H	ENST00000263388	NM_000435.2	529	Tac/Cac																																																																														
POLD1	0	MSKCC	GRCh37	19	50905875	50905875	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	206	927	1	ENST00000440232.2:c.847C>T	p.Gln283Ter	p.Q283*	ENST00000440232	NM_002691.3	283	Cag/Tag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266194	41266194	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	141	430	0	ENST00000349496.5:c.191A>G	p.Tyr64Cys	p.Y64C	ENST00000349496	NM_001904.3	64	tAt/tGt																																																																														
RASA1	0	MSKCC	GRCh37	5	86642543	86642543	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	56	431	0	ENST00000274376.6:c.1102+2T>C		p.X368_splice	ENST00000274376	NM_002890.2	368																																																																															
MET	0	MSKCC	GRCh37	7	116339542	116339542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	83	446	0	ENST00000397752.3:c.404G>A	p.Ser135Asn	p.S135N	ENST00000397752	NM_000245.2	135	aGc/aAc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151842259	151842259	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	151	515	0	ENST00000262189.6:c.14153A>G	p.His4718Arg	p.H4718R	ENST00000262189	NM_170606.2	4718	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	282	267	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ESR1	0	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	130	361	0	ENST00000206249.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000206249	NM_000125.3	536	cTc/cCc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060780	38060797	+	inframe_deletion	In_Frame_Del	DEL	GTTGATGGAGAACGGGTG	GTTGATGGAGAACGGGTG	-			P-0030545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			909	218	614	2	ENST00000250448.2:c.1192_1209del	p.His398_Asn403del	p.H398_N403del	ENST00000250448	NM_004496.3	398	CACCCGTTCTCCATCAAC/-																																																																														
AKT3	0	MSKCC	GRCh37	1	243727084	243727084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			697	115	343	0	ENST00000263826.5:c.886G>C	p.Gly296Arg	p.G296R	ENST00000263826	NM_005465.4	296	Ggg/Cgg																																																																														
POLE	0	MSKCC	GRCh37	12	133219510	133219510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			610	131	432	1	ENST00000320574.5:c.4624G>A	p.Gly1542Ser	p.G1542S	ENST00000320574	NM_006231.2	1542	Ggc/Agc																																																																														
PNRC1	0	MSKCC	GRCh37	6	89793488	89793488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	62	270	0	ENST00000336032.3:c.557T>A	p.Met186Lys	p.M186K	ENST00000336032	NM_006813.2	186	aTg/aAg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435481	110435481	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030545-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	101	353	1	ENST00000375856.3:c.2920C>A	p.Pro974Thr	p.P974T	ENST00000375856	NM_003749.2	974	Ccg/Acg																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	226	485	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
FGFR2	0	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	813	439	0	ENST00000358487.5:c.1975A>C	p.Lys659Gln	p.K659Q	ENST00000358487	NM_000141.4	659	Aag/Cag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426751	49426751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	37	255	0	ENST00000301067.7:c.11737C>A	p.Gln3913Lys	p.Q3913K	ENST00000301067	NM_003482.3	3913	Cag/Aag																																																																														
POLD1	0	MSKCC	GRCh37	19	50916702	50916702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	80	454	1	ENST00000440232.2:c.2174G>A	p.Arg725His	p.R725H	ENST00000440232	NM_002691.3	725	cGt/cAt																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981561	70981561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	141	745	0	ENST00000276594.2:c.535G>C	p.Glu179Gln	p.E179Q	ENST00000276594	NM_024504.3	179	Gag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	52	338	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MAX	0	MSKCC	GRCh37	14	65560512	65560512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	76	336	0	ENST00000358664.4:c.85A>G	p.Asn29Asp	p.N29D	ENST00000358664	NM_002382.4	29	Aat/Gat																																																																														
RAD21	0	MSKCC	GRCh37	8	117859890	117859890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	52	226	0	ENST00000297338.2:c.1745T>G	p.Leu582Arg	p.L582R	ENST00000297338	NM_006265.2	582	cTt/cGt																																																																														
RBM10	0	MSKCC	GRCh37	X	47045655	47045655	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0030964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	85	437	0	ENST00000329236.7:c.2304-2A>G		p.X768_splice	ENST00000329236	NM_001204466.1	768																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	80	367	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	125	554	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	65	307	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	46	272	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481903	56481905	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	104	519	1	ENST00000267101.3:c.833_835del	p.Thr278del	p.T278del	ENST00000267101	NM_001982.3	277	caCACc/cac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48575666	48575667	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	22	448	0	ENST00000342988.3:c.430_431del	p.Ser144ArgfsTer7	p.S144Rfs*7	ENST00000342988	NM_005359.5	142	gaTCtc/gatc																																																																														
APC	0	MSKCC	GRCh37	5	112173560	112173560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	46	284	0	ENST00000257430.4:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000257430	NM_000038.5	757	Caa/Taa																																																																														
SMAD2	0	MSKCC	GRCh37	18	45371747	45371748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	33	353	0	ENST00000262160.6:c.1243dup	p.Arg415LysfsTer25	p.R415Kfs*25	ENST00000262160	NM_005901.5	415	aga/aAga																																																																														
ROS1	0	MSKCC	GRCh37	6	117638414	117638414	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	37	357	0	ENST00000368508.3:c.6027T>G	p.Ile2009Met	p.I2009M	ENST00000368508	NM_002944.2	2009	atT/atG																																																																														
TBX3	0	MSKCC	GRCh37	12	115112334	115112334	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	11	66	0	ENST00000257566.3:c.1406A>T	p.Glu469Val	p.E469V	ENST00000257566	NM_016569.3	469	gAg/gTg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	31	368	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	133	389	0	ENST00000347630.2:c.373T>G	p.Phe125Val	p.F125V	ENST00000347630	NM_001007230.1	125	Ttt/Gtt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	150	214	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056352	27056352	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0030976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	122	217	0	ENST00000324856.7:c.1348C>T	p.Gln450Ter	p.Q450*	ENST00000324856	NM_006015.4	450	Cag/Tag																																																																														
MTOR	0	MSKCC	GRCh37	1	11307699	11307699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	179	358	0	ENST00000361445.4:c.1208G>T	p.Arg403Leu	p.R403L	ENST00000361445	NM_004958.3	403	cGa/cTa																																																																														
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	171	410	0	ENST00000347630.2:c.305T>C	p.Phe102Ser	p.F102S	ENST00000347630	NM_001007230.1	102	tTc/tCc																																																																														
ATR	0	MSKCC	GRCh37	3	142274839	142274840	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0030976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	187	428	0	ENST00000350721.4:c.2220_2221insACA	p.Leu740_Phe741insThr	p.L740_F741insT	ENST00000350721	NM_001184.3	740	-/ACA																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416567	49416567	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015961-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			969	124	790	0	ENST00000301067.7:c.16144del	p.His5382ThrfsTer36	p.H5382Tfs*36	ENST00000301067	NM_003482.3	5382	Cac/ac																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0030159-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			254	12	228	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49437178	49437178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	47	297	0	ENST00000301067.7:c.5501C>T	p.Ser1834Phe	p.S1834F	ENST00000301067	NM_003482.3	1834	tCc/tTc																																																																														
RB1	0	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	72	157	1	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	208	349	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
RRAS	0	MSKCC	GRCh37	19	50140123	50140177	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCACGCATGTACTGCTCTCTCATGGCCCCGAACTCTTCCTGGCCCGCGGTGT	CCAGCACGCATGTACTGCTCTCTCATGGCCCCGAACTCTTCCTGGCCCGCGGTGT	-			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	32	361	0	ENST00000246792.3:c.248_302del	p.Asp83AlafsTer133	p.D83Afs*133	ENST00000246792	NM_006270.3	83	gACACCGCGGGCCAGGAAGAGTTCGGGGCCATGAGAGAGCAGTACATGCGTGCTGGc/gc																																																																														
SHQ1	0	MSKCC	GRCh37	3	72842176	72842176	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	23	175	0	ENST00000325599.8:c.1072G>C	p.Val358Leu	p.V358L	ENST00000325599	NM_018130.2	358	Gtt/Ctt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	96	208	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
FAT1	0	MSKCC	GRCh37	4	187540718	187540718	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	84	178	0	ENST00000441802.2:c.7022T>G	p.Leu2341Arg	p.L2341R	ENST00000441802	NM_005245.3	2341	cTc/cGc																																																																														
EGFR	0	MSKCC	GRCh37	7	55229252	55229252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	61	257	0	ENST00000275493.2:c.1559C>T	p.Pro520Leu	p.P520L	ENST00000275493	NM_005228.3	520	cCc/cTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8317896	8317896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	80	200	0	ENST00000356435.5:c.5717G>T	p.Ser1906Ile	p.S1906I	ENST00000356435		1906	aGc/aTc																																																																														
TSC1	0	MSKCC	GRCh37	9	135776183	135776183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	44	217	0	ENST00000298552.3:c.2544G>C	p.Leu848Phe	p.L848F	ENST00000298552	NM_001162426.1	848	ttG/ttC																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	47	357	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	36	221	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	56	328	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	57	386	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	34	246	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	54	423	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	74	263	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
GATA3	0	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	48	535	2	ENST00000346208.3:c.404delC	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																														
CDH1	999	MSKCC	GRCh37	16	68835780	68835781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	56	338	1	ENST00000261769.5:c.377dup	p.Pro127AlafsTer41	p.P127Afs*41	ENST00000261769	NM_004360.3	124	cgc/cgCc																																																																														
DAXX	0	MSKCC	GRCh37	6	33289107	33289107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	69	414	0	ENST00000374542.5:c.445G>A	p.Ala149Thr	p.A149T	ENST00000374542	NM_001141970.1	149	Gcc/Acc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	76	403	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	70	387	0	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	83	523	6	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222868	5222868	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	55	367	0	ENST00000357368.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000357368	NM_002850.3	979	Cga/Tga																																																																														
RNF43	0	MSKCC	GRCh37	17	56448304	56448304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	78	425	0	ENST00000407977.2:c.343del	p.Ala115ProfsTer43	p.A115Pfs*43	ENST00000407977		115	Gcc/cc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100577	157100577	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	47	285	0	ENST00000346085.5:c.1518delC	p.Gly507AspfsTer16	p.G507Dfs*16	ENST00000346085	NM_020732.3	505	aCc/ac																																																																														
IRS2	0	MSKCC	GRCh37	13	110434595	110434595	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	69	423	0	ENST00000375856.3:c.3806A>C	p.Gln1269Pro	p.Q1269P	ENST00000375856	NM_003749.2	1269	cAg/cCg																																																																														
TP53	0	MSKCC	GRCh37	17	7572991	7572991	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	54	250	0	ENST00000269305.4:c.1118delA	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	373	aAg/ag																																																																														
BBC3	0	MSKCC	GRCh37	19	47725019	47725019	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	86	587	3	ENST00000449228.1:c.725del	p.Gly242AlafsTer48	p.G242Afs*48	ENST00000449228	NM_001127240.2	242	gGc/gc																																																																														
DDR2	0	MSKCC	GRCh37	1	162724625	162724625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	30	251	0	ENST00000367921.3:c.397C>T	p.Arg133Trp	p.R133W	ENST00000367921	NM_006182.2	133	Cgg/Tgg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78921083	78921083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	66	385	0	ENST00000306801.3:c.3197G>A	p.Arg1066Gln	p.R1066Q	ENST00000306801	NM_020761.2	1066	cGg/cAg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	52	359	2	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	89	464	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	57	407	3	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
AMER1	0	MSKCC	GRCh37	X	63411521	63411521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	88	513	0	ENST00000330258.3:c.1646G>A	p.Arg549Gln	p.R549Q	ENST00000330258	NM_152424.3	549	cGg/cAg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99181170	99181170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	35	329	0	ENST00000074304.5:c.2111G>A	p.Arg704His	p.R704H	ENST00000074304	NM_001134224.1	704	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112174973	112174973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	23	146	0	ENST00000257430.4:c.3682C>T	p.Gln1228Ter	p.Q1228*	ENST00000257430	NM_000038.5	1228	Cag/Tag																																																																														
CARD11	0	MSKCC	GRCh37	7	2951811	2951811	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146334064		P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	65	347	0	ENST00000396946.4:c.3139G>A	p.Ala1047Thr	p.A1047T	ENST00000396946	NM_032415.4	1047	Gcc/Acc																																																																														
FANCA	0	MSKCC	GRCh37	16	89831345	89831346	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	57	374	0	ENST00000389301.3:c.2730_2731del	p.Trp911AspfsTer31	p.W911Dfs*31	ENST00000389301	NM_000135.2	910	ctCTgg/ctgg																																																																														
GATA3	0	MSKCC	GRCh37	10	8100619	8100619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	80	499	2	ENST00000346208.3:c.593C>T	p.Ser198Leu	p.S198L	ENST00000346208		198	tCg/tTg																																																																														
PAK1	0	MSKCC	GRCh37	11	77069962	77069962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	66	279	0	ENST00000356341.3:c.578G>A	p.Arg193His	p.R193H	ENST00000356341	NM_002576.4	193	cGc/cAc																																																																														
PGR	0	MSKCC	GRCh37	11	100920788	100920788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	13	232	0	ENST00000325455.5:c.2360A>G	p.Gln787Arg	p.Q787R	ENST00000325455	NM_001202474.3	787	cAg/cGg																																																																														
KDM5A	0	MSKCC	GRCh37	12	402112	402114	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	50	326	0	ENST00000399788.2:c.4677_4679del	p.Glu1560del	p.E1560del	ENST00000399788	NM_001042603.1	1559	gaAGAg/gag																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987028	36987028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	52	368	0	ENST00000354822.5:c.661C>T	p.Arg221Cys	p.R221C	ENST00000354822	NM_001079668.2	221	Cgc/Tgc																																																																														
TSC2	0	MSKCC	GRCh37	16	2129197	2129197	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	85	488	0	ENST00000219476.3:c.3131G>T	p.Arg1044Met	p.R1044M	ENST00000219476	NM_000548.3	1044	aGg/aTg																																																																														
CDH1	0	MSKCC	GRCh37	16	68853250	68853250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	63	357	1	ENST00000261769.5:c.1633C>T	p.Arg545Trp	p.R545W	ENST00000261769	NM_004360.3	545	Cgg/Tgg																																																																														
NF1	0	MSKCC	GRCh37	17	29554293	29554293	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	82	473	0	ENST00000358273.4:c.2309C>G	p.Thr770Ser	p.T770S	ENST00000358273	NM_001042492.2	770	aCt/aGt																																																																														
STAT3	0	MSKCC	GRCh37	17	40476746	40476746	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	57	313	0	ENST00000264657.5:c.1583T>C	p.Leu528Pro	p.L528P	ENST00000264657	NM_139276.2	528	cTg/cCg																																																																														
TCF3	0	MSKCC	GRCh37	19	1622410	1622410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	71	399	0	ENST00000344749.5:c.554A>G	p.Tyr185Cys	p.Y185C	ENST00000344749	NM_001136139.2	185	tAc/tGc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4099312	4099312	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	78	538	2	ENST00000262948.5:c.806delC	p.Pro269ArgfsTer58	p.P269Rfs*58	ENST00000262948	NM_030662.3	269	cCg/cg																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627722	14627722	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	75	406	2	ENST00000254322.2:c.348delT	p.Phe116LeufsTer29	p.F116Lfs*29	ENST00000254322	NM_006145.1	116	ttT/tt																																																																														
BABAM1	0	MSKCC	GRCh37	19	17379845	17379845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	87	570	0	ENST00000359435.4:c.230C>A	p.Pro77Gln	p.P77Q	ENST00000359435	NM_001033549.1	77	cCg/cAg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210944	36210944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	94	536	0	ENST00000222270.7:c.695G>A	p.Arg232Lys	p.R232K	ENST00000222270	NM_014727.1	232	aGg/aAg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467481	25467481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	56	374	0	ENST00000264709.3:c.1595G>A	p.Gly532Asp	p.G532D	ENST00000264709	NM_175629.2	532	gGc/gAc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25471041	25471041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	64	475	0	ENST00000264709.3:c.720G>T	p.Glu240Asp	p.E240D	ENST00000264709	NM_175629.2	240	gaG/gaT																																																																														
RUNX1	0	MSKCC	GRCh37	21	36206730	36206730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	61	405	1	ENST00000300305.3:c.782C>A	p.Pro261His	p.P261H	ENST00000300305		261	cCt/cAt																																																																														
EP300	0	MSKCC	GRCh37	22	41521970	41521970	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	57	414	0	ENST00000263253.7:c.832A>C	p.Thr278Pro	p.T278P	ENST00000263253	NM_001429.3	278	Act/Cct																																																																														
WWTR1	0	MSKCC	GRCh37	3	149374753	149374753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	64	309	0	ENST00000360632.3:c.341G>A	p.Arg114His	p.R114H	ENST00000360632	NM_015472.4	114	cGc/cAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927471	178927471	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	13	221	0	ENST00000263967.3:c.1234C>T	p.Arg412Ter	p.R412*	ENST00000263967	NM_006218.2	412	Cga/Tga																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803700	1803700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	100	559	0	ENST00000260795.2:c.878T>C	p.Val293Ala	p.V293A	ENST00000260795		293	gTg/gCg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31483732	31483732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	29	164	0	ENST00000344624.3:c.2000C>A	p.Pro667His	p.P667H	ENST00000344624		667	cCt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112154839	112154839	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	40	341	0	ENST00000257430.4:c.1112del	p.Gly371GlufsTer83	p.G371Efs*83	ENST00000257430	NM_000038.5	370	ttG/tt																																																																														
NSD1	0	MSKCC	GRCh37	5	176636733	176636733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	48	289	0	ENST00000439151.2:c.1333G>T	p.Gly445Cys	p.G445C	ENST00000439151	NM_022455.4	445	Ggt/Tgt																																																																														
MDC1	0	MSKCC	GRCh37	6	30670632	30670634	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	51	324	0	ENST00000376406.3:c.5886_5888del	p.Phe1962del	p.F1962del	ENST00000376406	NM_014641.2	1962	ttCTTa/tta																																																																														
TAP1	0	MSKCC	GRCh37	6	32820828	32820828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	86	475	0	ENST00000354258.4:c.766C>A	p.Leu256Ile	p.L256I	ENST00000354258	NM_000593.5	256	Ctc/Atc																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138198324	138198324	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	35	207	0	ENST00000237289.4:c.917A>G	p.Tyr306Cys	p.Y306C	ENST00000237289	NM_001270507.1	306	tAc/tGc																																																																														
PARK2	0	MSKCC	GRCh37	6	161781156	161781156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	56	366	0	ENST00000366898.1:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000366898	NM_004562.2	417	Ccc/Tcc																																																																														
RAC1	0	MSKCC	GRCh37	7	6431638	6431638	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	52	244	0	ENST00000356142.4:c.191A>G	p.Tyr64Cys	p.Y64C	ENST00000356142	NM_018890.3	64	tAt/tGt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508065	106508065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	15	131	0	ENST00000359195.3:c.59G>A	p.Arg20His	p.R20H	ENST00000359195	NM_002649.2	20	cGc/cAc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38189055	38189055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	43	378	0	ENST00000317025.8:c.959C>T	p.Ala320Val	p.A320V	ENST00000317025	NM_023034.1	320	gCg/gTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413246	139413246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	69	460	0	ENST00000277541.6:c.896G>A	p.Cys299Tyr	p.C299Y	ENST00000277541	NM_017617.3	299	tGc/tAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39934426	39934426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	45	274	0	ENST00000378444.4:c.173C>T	p.Ala58Val	p.A58V	ENST00000378444	NM_001123385.1	58	gCg/gTg																																																																														
ATRX	0	MSKCC	GRCh37	X	76855219	76855219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	30	373	0	ENST00000373344.5:c.5768G>A	p.Ser1923Asn	p.S1923N	ENST00000373344	NM_000489.3	1923	aGc/aAc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793433	242793433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2227982		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	155	537	1	ENST00000334409.5:c.644C>T	p.Ala215Val	p.A215V	ENST00000334409	NM_005018.2	215	gCc/gTc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	142	380	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	137	322	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	177	564	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	134	346	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	25	254	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
B2M	0	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	105	287	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																														
CASP8	0	MSKCC	GRCh37	2	202141584	202141584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	181	386	0	ENST00000358485.4:c.872C>A	p.Pro291His	p.P291H	ENST00000358485	NM_001080125.1	291	cCt/cAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	360	523	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	384	655	4	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	122	408	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	128	337	3	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	145	533	0	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3828768	3828768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	165	407	0	ENST00000262367.5:c.1874G>A	p.Arg625His	p.R625H	ENST00000262367	NM_004380.2	625	cGc/cAc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	301	437	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
SETD2	0	MSKCC	GRCh37	3	47147533	47147533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	123	386	0	ENST00000409792.3:c.4793G>A	p.Arg1598Gln	p.R1598Q	ENST00000409792	NM_014159.6	1598	cGa/cAa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	107	302	0	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	178	517	5	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
RAD50	0	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	155	364	4	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14629033	14629035	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	107	405	0	ENST00000254322.2:c.127_129del	p.Glu43del	p.E43del	ENST00000254322	NM_006145.1	43	GAG/-																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	394	551	8	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50480110	50480110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	167	420	0	ENST00000394963.4:c.344C>T	p.Ala115Val	p.A115V	ENST00000394963	NM_003076.4	115	gCg/gTg																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	143	389	2	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	164	426	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
POLE	0	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	182	526	1	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																														
FAT1	0	MSKCC	GRCh37	4	187510102	187510102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	167	348	0	ENST00000441802.2:c.13411G>A	p.Ala4471Thr	p.A4471T	ENST00000441802	NM_005245.3	4471	Gcg/Acg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401384	139401384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	197	572	1	ENST00000277541.6:c.3685G>A	p.Val1229Ile	p.V1229I	ENST00000277541	NM_017617.3	1229	Gtt/Att																																																																														
PTCH1	0	MSKCC	GRCh37	9	98238356	98238356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	109	384	0	ENST00000331920.6:c.1688C>T	p.Ala563Val	p.A563V	ENST00000331920	NM_000264.3	563	gCg/gTg																																																																														
BBC3	0	MSKCC	GRCh37	19	47725018	47725019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	227	681	0	ENST00000449228.1:c.725dupG	p.Arg243GlnfsTer7	p.R243Qfs*7	ENST00000449228	NM_001127240.2	242	ggc/ggGc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63530163	63530163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145007501		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	146	388	0	ENST00000307078.5:c.2272G>A	p.Ala758Thr	p.A758T	ENST00000307078	NM_004655.3	758	Gcg/Acg																																																																														
SPEN	0	MSKCC	GRCh37	1	16256501	16256501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	209	572	0	ENST00000375759.3:c.3766G>A	p.Glu1256Lys	p.E1256K	ENST00000375759	NM_015001.2	1256	Gaa/Aaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546787	9546787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	94	227	0	ENST00000353224.5:c.1235C>T	p.Pro412Leu	p.P412L	ENST00000353224	NM_177990.2	412	cCg/cTg																																																																														
TRAF7	0	MSKCC	GRCh37	16	2213961	2213961	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	200	572	4	ENST00000326181.6:c.45delG	p.Ser17AlafsTer111	p.S17Afs*111	ENST00000326181	NM_032271.2	14	Ggg/gg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395053	139395053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	141	491	2	ENST00000277541.6:c.5885G>A	p.Arg1962His	p.R1962H	ENST00000277541	NM_017617.3	1962	cGc/cAc																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519504	137519505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	79	266	2	ENST00000367739.4:c.1132_1133dupAG	p.Ser378ArgfsTer6	p.S378Rfs*6	ENST00000367739	NM_000416.2	378	agt/agAGt																																																																														
CENPA	0	MSKCC	GRCh37	2	27016049	27016049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	160	472	0	ENST00000335756.4:c.325G>A	p.Ala109Thr	p.A109T	ENST00000335756	NM_001809.3	109	Gcc/Acc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198257832	198257832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	183	414	0	ENST00000335508.6:c.3620C>T	p.Ser1207Leu	p.S1207L	ENST00000335508	NM_012433.2	1207	tCg/tTg																																																																														
JAK3	0	MSKCC	GRCh37	19	17950344	17950344	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	217	652	0	ENST00000458235.1:c.1383del	p.Leu462CysfsTer3	p.L462Cfs*3	ENST00000458235	NM_000215.3	461	ggG/gg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346961	89346961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	85	272	0	ENST00000301030.4:c.5989G>A	p.Ala1997Thr	p.A1997T	ENST00000301030	NM_001256183.1	1997	Gcg/Acg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945048	151945048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	41	413	0	ENST00000262189.6:c.2471G>A	p.Gly824Asp	p.G824D	ENST00000262189	NM_170606.2	824	gGc/gAc																																																																														
BLM	0	MSKCC	GRCh37	15	91306294	91306294	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	122	330	0	ENST00000355112.3:c.1986del	p.Lys662AsnfsTer12	p.K662Nfs*12	ENST00000355112	NM_000057.2	661	Aaa/aa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099578	157099579	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	16	43	0	ENST00000346085.5:c.521dup	p.Pro177AlafsTer55	p.P177Afs*55	ENST00000346085	NM_020732.3	172	gac/gaCc																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664882	138664882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	51	57	1	ENST00000330315.3:c.683C>T	p.Ala228Val	p.A228V	ENST00000330315	NM_023067.3	228	gCa/gTa																																																																														
MTOR	0	MSKCC	GRCh37	1	11288772	11288772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	93	429	0	ENST00000361445.4:c.2983C>T	p.Pro995Ser	p.P995S	ENST00000361445	NM_004958.3	995	Ccc/Tcc																																																																														
CDC73	79577	MSKCC	GRCh37	1	193111006	193111006	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	87	218	0	ENST00000367435.3:c.544del	p.Ile182LeufsTer20	p.I182Lfs*20	ENST00000367435	NM_024529.4	180	gAa/ga																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724562	112724562	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	165	432	1	ENST00000369452.4:c.446T>C	p.Met149Thr	p.M149T	ENST00000369452	NM_007373.3	149	aTg/aCg																																																																														
WT1	0	MSKCC	GRCh37	11	32410704	32410704	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139893274		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	101	260	0	ENST00000332351.3:c.1454G>A	p.Arg485Gln	p.R485Q	ENST00000332351	NM_024426.4	485	cGg/cAg																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67200228	67200228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	160	487	0	ENST00000312629.5:c.536C>T	p.Thr179Met	p.T179M	ENST00000312629	NM_003952.2	179	aCg/aTg																																																																														
SESN3	0	MSKCC	GRCh37	11	94963954	94963954	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	61	199	0	ENST00000536441.1:c.71T>C	p.Leu24Pro	p.L24P	ENST00000536441	NM_144665.3	24	cTg/cCg																																																																														
PGR	0	MSKCC	GRCh37	11	100998717	100998717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	121	484	1	ENST00000325455.5:c.1085C>T	p.Ala362Val	p.A362V	ENST00000325455	NM_001202474.3	362	gCg/gTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49428217	49428217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	225	558	1	ENST00000301067.7:c.10483C>T	p.Pro3495Ser	p.P3495S	ENST00000301067	NM_003482.3	3495	Ccc/Tcc																																																																														
TBX3	0	MSKCC	GRCh37	12	115109836	115109836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	91	260	0	ENST00000257566.3:c.2042C>T	p.Pro681Leu	p.P681L	ENST00000257566	NM_016569.3	681	cCg/cTg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972803	32972803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	148	401	0	ENST00000380152.3:c.10153C>T	p.Arg3385Cys	p.R3385C	ENST00000380152		3385	Cgt/Tgt																																																																														
IRS2	0	MSKCC	GRCh37	13	110434973	110434973	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	111	371	0	ENST00000375856.3:c.3428del	p.Gly1143AlafsTer116	p.G1143Afs*116	ENST00000375856	NM_003749.2	1143	gGc/gc																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872481	35872481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	156	378	0	ENST00000216797.5:c.422A>G	p.Asp141Gly	p.D141G	ENST00000216797	NM_020529.2	141	gAc/gGc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43701200	43701200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	201	452	0	ENST00000382044.4:c.5495C>T	p.Ser1832Phe	p.S1832F	ENST00000382044	NM_001141980.1	1832	tCt/tTt																																																																														
PDPK1	0	MSKCC	GRCh37	16	2645837	2645837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	151	440	0	ENST00000342085.4:c.1387G>A	p.Val463Met	p.V463M	ENST00000342085	NM_002613.4	463	Gtg/Atg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858705	9858705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	87	280	0	ENST00000330684.3:c.2696G>A	p.Arg899Gln	p.R899Q	ENST00000330684	NM_001134407.1	899	cGg/cAg																																																																														
SOCS1	0	MSKCC	GRCh37	16	11349196	11349196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	21	11	0	ENST00000332029.2:c.140C>T	p.Ala47Val	p.A47V	ENST00000332029	NM_003745.1	47	gCc/gTc																																																																														
MAPK3	0	MSKCC	GRCh37	16	30133298	30133298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	168	466	0	ENST00000263025.4:c.200G>A	p.Arg67His	p.R67H	ENST00000263025	NM_002746.2	67	cGc/cAc																																																																														
CTCF	0	MSKCC	GRCh37	16	67671680	67671680	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201916739		P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	181	404	0	ENST00000264010.4:c.2089G>A	p.Ala697Thr	p.A697T	ENST00000264010	NM_006565.3	697	Gca/Aca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993624	72993624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	137	469	0	ENST00000268489.5:c.421G>A	p.Ala141Thr	p.A141T	ENST00000268489	NM_006885.3	141	Gcg/Acg																																																																														
FANCA	0	MSKCC	GRCh37	16	89877156	89877156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	190	473	0	ENST00000389301.3:c.481T>C	p.Phe161Leu	p.F161L	ENST00000389301	NM_000135.2	161	Ttc/Ctc																																																																														
RNF43	0	MSKCC	GRCh37	17	56434890	56434891	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	173	487	0	ENST00000407977.2:c.2246_2247del	p.Ser749Ter	p.S749*	ENST00000407977		749	tCT/t																																																																														
YES1	0	MSKCC	GRCh37	18	736897	736897	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	208	544	1	ENST00000314574.4:c.1202A>C	p.Asn401Thr	p.N401T	ENST00000314574	NM_005433.3	401	aAt/aCt																																																																														
BABAM1	0	MSKCC	GRCh37	19	17379697	17379697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	63	571	0	ENST00000359435.4:c.82C>A	p.Arg28Ser	p.R28S	ENST00000359435	NM_001033549.1	28	Cgc/Agc																																																																														
BBC3	0	MSKCC	GRCh37	19	47730007	47730007	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	61	190	0	ENST00000449228.1:c.382T>G	p.Ser128Ala	p.S128A	ENST00000449228	NM_001127240.2	128	Tca/Gca																																																																														
MSH2	0	MSKCC	GRCh37	2	47707840	47707840	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	113	266	0	ENST00000233146.2:c.2464T>G	p.Cys822Gly	p.C822G	ENST00000233146	NM_000251.2	822	Tgt/Ggt																																																																														
MLH1	0	MSKCC	GRCh37	3	37050348	37050349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	147	376	0	ENST00000231790.2:c.503dup	p.Asn168LysfsTer4	p.N168Kfs*4	ENST00000231790	NM_000249.3	166	tta/ttAa																																																																														
MST1R	0	MSKCC	GRCh37	3	49924799	49924799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	222	633	0	ENST00000296474.3:c.4144C>T	p.Pro1382Ser	p.P1382S	ENST00000296474	NM_002447.2	1382	Ccc/Tcc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916747	178916747	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	169	362	0	ENST00000263967.3:c.134T>C	p.Ile45Thr	p.I45T	ENST00000263967	NM_006218.2	45	aTa/aCa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803576	1803576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	133	311	1	ENST00000260795.2:c.754C>T	p.Arg252Trp	p.R252W	ENST00000260795		252	Cgg/Tgg																																																																														
FAT1	0	MSKCC	GRCh37	4	187518033	187518033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	177	414	1	ENST00000441802.2:c.12661C>A	p.Leu4221Met	p.L4221M	ENST00000441802	NM_005245.3	4221	Ctg/Atg																																																																														
FAT1	0	MSKCC	GRCh37	4	187542414	187542414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	118	308	0	ENST00000441802.2:c.5326G>A	p.Glu1776Lys	p.E1776K	ENST00000441802	NM_005245.3	1776	Gaa/Aaa																																																																														
NSD1	0	MSKCC	GRCh37	5	176636791	176636791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	179	438	0	ENST00000439151.2:c.1391C>A	p.Pro464His	p.P464H	ENST00000439151	NM_022455.4	464	cCt/cAt																																																																														
FLT4	0	MSKCC	GRCh37	5	180049730	180049730	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	132	409	0	ENST00000261937.6:c.1657+1G>A		p.X553_splice	ENST00000261937	NM_182925.4	553																																																																															
HIST1H3J	0	MSKCC	GRCh37	6	27858400	27858401	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	101	402	0	ENST00000359303.2:c.170dup	p.Ser58ValfsTer3	p.S58Vfs*3	ENST00000359303	NM_003535.2	57	aag/aaAg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120713	94120713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	118	334	0	ENST00000369303.4:c.338C>A	p.Pro113His	p.P113H	ENST00000369303	NM_004440.3	113	cCt/cAt																																																																														
FYN	0	MSKCC	GRCh37	6	112041092	112041092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	152	366	0	ENST00000368678.4:c.163G>A	p.Ala55Thr	p.A55T	ENST00000368678		55	Gca/Aca																																																																														
ROS1	0	MSKCC	GRCh37	6	117645553	117645553	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	173	462	0	ENST00000368508.3:c.5583T>G	p.Ser1861Arg	p.S1861R	ENST00000368508	NM_002944.2	1861	agT/agG																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467922	50467922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	62	350	0	ENST00000331340.3:c.1157G>A	p.Arg386His	p.R386H	ENST00000331340	NM_006060.4	386	cGc/cAc																																																																														
HGF	0	MSKCC	GRCh37	7	81334789	81334789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	130	385	0	ENST00000222390.5:c.1927A>G	p.Ser643Gly	p.S643G	ENST00000222390	NM_000601.4	643	Agc/Ggc																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540396	23540396	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	27	58	0	ENST00000380871.4:c.7A>G	p.Arg3Gly	p.R3G	ENST00000380871	NM_006167.3	3	Agg/Ggg																																																																														
PREX2	0	MSKCC	GRCh37	8	68993058	68993058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	124	368	0	ENST00000288368.4:c.1865del	p.Gly622AspfsTer22	p.G622Dfs*22	ENST00000288368	NM_024870.2	621	aaG/aa																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128347850	128347850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	35	468	0	ENST00000265960.3:c.655C>T	p.Arg219Trp	p.R219W	ENST00000265960	NM_001006617.1	219	Cgg/Tgg																																																																														
RXRA	0	MSKCC	GRCh37	9	137313568	137313568	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	236	693	0	ENST00000481739.1:c.827T>C	p.Leu276Pro	p.L276P	ENST00000481739	NM_002957.4	276	cTt/cCt																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841259	15841259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	89	189	0	ENST00000307771.7:c.1343G>A	p.Arg448His	p.R448H	ENST00000307771	NM_005089.3	448	cGc/cAc																																																																														
MED12	0	MSKCC	GRCh37	X	70346845	70346845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	158	399	0	ENST00000374080.3:c.2712G>T	p.Glu904Asp	p.E904D	ENST00000374080		904	gaG/gaT																																																																														
ATRX	0	MSKCC	GRCh37	X	76940474	76940474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	187	417	0	ENST00000373344.5:c.619G>A	p.Asp207Asn	p.D207N	ENST00000373344	NM_000489.3	207	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	69	486	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0031131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	161	776	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
PAK1	0	MSKCC	GRCh37	11	77047205	77047205	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	93	506	0	ENST00000356341.3:c.1339A>G	p.Ile447Val	p.I447V	ENST00000356341	NM_002576.4	447	Atc/Gtc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	14	437	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PTEN	0	MSKCC	GRCh37	10	89711891	89711891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	21	418	0	ENST00000371953.3:c.509G>A	p.Ser170Asn	p.S170N	ENST00000371953	NM_000314.4	170	aGt/aAt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	30	436	0	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0031132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	56	626	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27102189	27102190	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0031132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	24	408	0	ENST00000324856.7:c.5117_5118dup	p.Gln1708ValfsTer7	p.Q1708Vfs*7	ENST00000324856	NM_006015.4	1705	-/CT																																																																														
FGFR3	0	MSKCC	GRCh37	4	1805420	1805420	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0031132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	28	421	1	ENST00000260795.2:c.932C>T	p.Thr311Met	p.T311M	ENST00000260795		311	aCg/aTg																																																																														
SETD8	0	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	10	45	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																														
SMYD3	0	MSKCC	GRCh37	1	246078851	246078851	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61762672		P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	130	604	2	ENST00000388985.4:c.794G>A	p.Arg265His	p.R265H	ENST00000388985		265	cGt/cAt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9782198	9782198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	20	476	0	ENST00000377346.4:c.2221C>A	p.Leu741Met	p.L741M	ENST00000377346	NM_005026.3	741	Ctg/Atg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18499742	18499742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	16	368	0	ENST00000266497.5:c.1597C>T	p.His533Tyr	p.H533Y	ENST00000266497		533	Cac/Tac																																																																														
RARA	0	MSKCC	GRCh37	17	38508653	38508653	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	171	703	0	ENST00000254066.5:c.701A>T	p.Lys234Met	p.K234M	ENST00000254066	NM_000964.3	234	aAg/aTg																																																																														
BCL6	0	MSKCC	GRCh37	3	187440284	187440285	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	482	0	ENST00000232014.4:c.2082dup	p.Ala695SerfsTer3	p.A695Sfs*3	ENST00000232014	NM_001130845.1	694	-/A																																																																														
FLT4	0	MSKCC	GRCh37	5	180057092	180057092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	25	645	0	ENST00000261937.6:c.527T>C	p.Leu176Pro	p.L176P	ENST00000261937	NM_182925.4	176	cTg/cCg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528868	157528868	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	95	534	0	ENST00000346085.5:c.6593C>G	p.Ala2198Gly	p.A2198G	ENST00000346085	NM_020732.3	2198	gCg/gGg																																																																														
CARD11	0	MSKCC	GRCh37	7	2951873	2951873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	181	596	0	ENST00000396946.4:c.3077C>T	p.Ser1026Phe	p.S1026F	ENST00000396946	NM_032415.4	1026	tCc/tTc																																																																														
EGFR	0	MSKCC	GRCh37	7	55214315	55214318	+	frameshift_variant	Frame_Shift_Del	DEL	CGTG	CGTG	-			P-0031135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	31	482	0	ENST00000275493.2:c.443_446del	p.Val148GlyfsTer19	p.V148Gfs*19	ENST00000275493	NM_005228.3	147	gcCGTG/gc																																																																														
ETV6	0	MSKCC	GRCh37	12	12038879	12038879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	220	439	1	ENST00000396373.4:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000396373	NM_001987.4	391	tAt/tGt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061232	38061232	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	52	510	0	ENST00000250448.2:c.757A>G	p.Met253Val	p.M253V	ENST00000250448	NM_004496.3	253	Atg/Gtg																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729084	66729100	+	protein_altering_variant	In_Frame_Del	DEL	CTAATTCATCTGGAGAT	CTAATTCATCTGGAGAT	GAGAG			P-0031137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	198	568	1	ENST00000307102.5:c.292_308delinsGAGAG	p.Leu98_Ile103delinsGluSer	p.L98_I103delinsES	ENST00000307102	NM_002755.3	98	CTAATTCATCTGGAGATc/GAGAGc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	59	367	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EP300	0	MSKCC	GRCh37	22	41547874	41547874	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	45	438	0	ENST00000263253.7:c.2855C>G	p.Ser952Ter	p.S952*	ENST00000263253	NM_001429.3	952	tCa/tGa																																																																														
SETD2	0	MSKCC	GRCh37	3	47103717	47103717	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	56	477	0	ENST00000409792.3:c.6229C>T	p.Arg2077Ter	p.R2077*	ENST00000409792	NM_014159.6	2077	Cga/Tga																																																																														
AKT1	0	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	53	589	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094347	27094347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	37	500	0	ENST00000324856.7:c.3055G>C	p.Glu1019Gln	p.E1019Q	ENST00000324856	NM_006015.4	1019	Gag/Cag																																																																														
EED	0	MSKCC	GRCh37	11	85977198	85977198	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	25	449	0	ENST00000263360.6:c.800C>G	p.Ser267Ter	p.S267*	ENST00000263360	NM_003797.3	267	tCa/tGa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223316	36223316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	94	895	0	ENST00000222270.7:c.5866G>T	p.Gly1956Trp	p.G1956W	ENST00000222270	NM_014727.1	1956	Ggg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	206	509	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	66	507	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	43	387	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	163	549	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912195	114912195	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	143	539	0	ENST00000543371.1:c.1265A>G	p.Asn422Ser	p.N422S	ENST00000543371	NM_001198531.1	422	aAc/aGc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822385	72822385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	75	833	1	ENST00000268489.5:c.9790G>A	p.Ala3264Thr	p.A3264T	ENST00000268489	NM_006885.3	3264	Gcc/Acc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554198	63554198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	146	680	0	ENST00000307078.5:c.541G>T	p.Val181Leu	p.V181L	ENST00000307078	NM_004655.3	181	Gtg/Ttg																																																																														
APC	0	MSKCC	GRCh37	5	112174843	112174844	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0031140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	67	357	0	ENST00000257430.4:c.3554_3555delCA	p.Thr1185ArgfsTer22	p.T1185Rfs*22	ENST00000257430	NM_000038.5	1184	gcCAca/gcca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0031143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	61	433	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
DAXX	0	MSKCC	GRCh37	6	33288996	33288996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	70	490	2	ENST00000374542.5:c.556C>T	p.Arg186Trp	p.R186W	ENST00000374542	NM_001141970.1	186	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	18	485	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0031148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	17	476	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
ATM	0	MSKCC	GRCh37	11	108198415	108198415	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	64	509	0	ENST00000278616.4:c.7019T>A	p.Val2340Asp	p.V2340D	ENST00000278616	NM_000051.3	2340	gTt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	370	577	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
CDK12	0	MSKCC	GRCh37	17	37627913	37627913	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	147	510	0	ENST00000447079.4:c.1828A>T	p.Lys610Ter	p.K610*	ENST00000447079	NM_015083.1	610	Aag/Tag																																																																														
NBN	0	MSKCC	GRCh37	8	90990484	90990484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	41	482	0	ENST00000265433.3:c.548C>T	p.Ala183Val	p.A183V	ENST00000265433	NM_002485.4	183	gCa/gTa																																																																														
TSC2	0	MSKCC	GRCh37	16	2129198	2129198	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0031151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	229	767	1	ENST00000219476.3:c.3131+1G>T		p.X1044_splice	ENST00000219476	NM_000548.3	1044																																																																															
EPAS1	0	MSKCC	GRCh37	2	46607619	46607619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	486	837	3	ENST00000263734.3:c.1808C>T	p.Pro603Leu	p.P603L	ENST00000263734	NM_001430.4	603	cCc/cTc																																																																														
MED12	0	MSKCC	GRCh37	X	70345223	70345223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	161	599	1	ENST00000374080.3:c.2249G>A	p.Cys750Tyr	p.C750Y	ENST00000374080		750	tGc/tAc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252911	36252911	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	AA			P-0031151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	230	431	0	ENST00000300305.3:c.451delinsTT	p.Met151PhefsTer9	p.M151Ffs*9	ENST00000300305		151	Atg/TTtg																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	89	546	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0031153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	408	538	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
NTRK3	0	MSKCC	GRCh37	15	88690572	88690600	+	frameshift_variant	Frame_Shift_Del	DEL	CGAAGACTCAGCGTCTGGAAGAGCTGCCA	CGAAGACTCAGCGTCTGGAAGAGCTGCCA	-			P-0031153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	73	459	0	ENST00000360948.2:c.430_458del	p.Trp144GlyfsTer14	p.W144Gfs*14	ENST00000360948	NM_001012338.2	144	TGGCAGCTCTTCCAGACGCTGAGTCTTCGg/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	44	405	0				ENST00000310581	NM_198253.2																																																																																
KMT2D	0	MSKCC	GRCh37	12	49447310	49447310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	570	45	0	ENST00000301067.7:c.788G>A	p.Arg263His	p.R263H	ENST00000301067	NM_003482.3	263	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0023276-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			224	505	696	7	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
MGA	0	MSKCC	GRCh37	15	41961688	41961688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023276-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	205	591	5	ENST00000219905.7:c.596G>A	p.Arg199His	p.R199H	ENST00000219905	NM_001164273.1	199	cGt/cAt																																																																														
SMAD2	0	MSKCC	GRCh37	18	45372103	45372103	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023276-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	409	666	6	ENST00000262160.6:c.1066T>G	p.Phe356Val	p.F356V	ENST00000262160	NM_005901.5	356	Ttt/Gtt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	475	448	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2217034	2217034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	211	527	0	ENST00000398665.3:c.2489C>T	p.Pro830Leu	p.P830L	ENST00000398665	NM_032482.2	830	cCg/cTg																																																																														
RAD21	0	MSKCC	GRCh37	8	117868953	117868953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	147	256	0	ENST00000297338.2:c.746C>T	p.Ser249Phe	p.S249F	ENST00000297338	NM_006265.2	249	tCt/tTt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713877	30713877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	171	366	0	ENST00000359013.4:c.1277C>T	p.Ser426Phe	p.S426F	ENST00000359013	NM_001024847.2	426	tCc/tTc																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41748312	41748312	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	239	545	0	ENST00000226382.2:c.457T>G	p.Phe153Val	p.F153V	ENST00000226382	NM_003924.3	153	Ttt/Gtt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	131	564	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55211080	55211080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	132	595	0	ENST00000275493.2:c.323G>A	p.Arg108Lys	p.R108K	ENST00000275493	NM_005228.3	108	aGa/aAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	136	404	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
CSDE1	0	MSKCC	GRCh37	1	115280160	115280160	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	172	403	0	ENST00000438362.2:c.472T>G	p.Leu158Val	p.L158V	ENST00000438362	NM_001242891.1	158	Tta/Gta																																																																														
GATA3	0	MSKCC	GRCh37	10	8111467	8111467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	207	489	2	ENST00000346208.3:c.953C>T	p.Ala318Val	p.A318V	ENST00000346208		318	gCg/gTg																																																																														
TET1	0	MSKCC	GRCh37	10	70360793	70360793	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	39	300	0	ENST00000373644.4:c.1968+2T>C		p.X656_splice	ENST00000373644	NM_030625.2	656																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	89	300	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	61	252	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	190	462	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
MYOD1	0	MSKCC	GRCh37	11	17742865	17742865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	216	636	0	ENST00000250003.3:c.773G>A	p.Arg258His	p.R258H	ENST00000250003	NM_002478.4	258	cGc/cAc																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67196604	67196604	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	89	457	0	ENST00000312629.5:c.133T>C	p.Tyr45His	p.Y45H	ENST00000312629	NM_003952.2	45	Tat/Cat																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67202569	67202569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	223	597	1	ENST00000312629.5:c.1378G>A	p.Ala460Thr	p.A460T	ENST00000312629	NM_003952.2	460	Gcc/Acc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	156	462	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	117	450	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	246	781	7	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478777	56478777	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	175	409	0	ENST00000267101.3:c.235-2A>C		p.X79_splice	ENST00000267101	NM_001982.3	79																																																																															
SH2B3	0	MSKCC	GRCh37	12	111884621	111884621	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	108	458	0	ENST00000341259.2:c.797T>C	p.Leu266Pro	p.L266P	ENST00000341259	NM_005475.2	266	cTt/cCt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43738624	43738624	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	195	537	0	ENST00000382044.4:c.3001A>T	p.Thr1001Ser	p.T1001S	ENST00000382044	NM_001141980.1	1001	Act/Tct																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	132	496	0	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																														
PALB2	0	MSKCC	GRCh37	16	23649273	23649273	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200048921		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	117	335	0	ENST00000261584.4:c.109C>T	p.Arg37Cys	p.R37C	ENST00000261584	NM_024675.3	37	Cgt/Tgt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12011137	12011137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	112	380	0	ENST00000353533.5:c.544T>C	p.Ser182Pro	p.S182P	ENST00000353533	NM_003010.3	182	Tct/Cct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	141	578	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59857641	59857641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	117	292	0	ENST00000259008.2:c.1916A>G	p.His639Arg	p.H639R	ENST00000259008	NM_032043.2	639	cAt/cGt																																																																														
MALT1	0	MSKCC	GRCh37	18	56381342	56381342	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	78	262	0	ENST00000348428.3:c.985+1G>C		p.X329_splice	ENST00000348428	NM_006785.3	329																																																																															
TCF3	0	MSKCC	GRCh37	19	1650237	1650237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	221	611	1	ENST00000344749.5:c.11C>T	p.Pro4Leu	p.P4L	ENST00000344749	NM_001136139.2	4	cCg/cTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212055	5212055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	185	639	3	ENST00000357368.4:c.4976G>A	p.Arg1659His	p.R1659H	ENST00000357368	NM_002850.3	1659	cGc/cAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11130286	11130286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	175	478	0	ENST00000344626.4:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000344626	NM_003072.3	842	cGg/cAg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211549	36211549	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	59	552	0	ENST00000222270.7:c.1304del	p.Pro435GlnfsTer40	p.P435Qfs*40	ENST00000222270	NM_014727.1	434	Ccc/cc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224339	36224340	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	204	744	0	ENST00000222270.7:c.6895dupC	p.Arg2299ProfsTer4	p.R2299Pfs*4	ENST00000222270	NM_014727.1	2297	gcc/gCcc																																																																														
CASP8	0	MSKCC	GRCh37	2	202137404	202137404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	30	377	0	ENST00000358485.4:c.632T>C	p.Leu211Pro	p.L211P	ENST00000358485	NM_001080125.1	211	cTg/cCg																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793431	242793431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	168	588	0	ENST00000334409.5:c.646G>A	p.Val216Met	p.V216M	ENST00000334409	NM_005018.2	216	Gtg/Atg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62321659	62321659	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	51	541	0	ENST00000508582.2:c.2350G>C	p.Ala784Pro	p.A784P	ENST00000508582		784	Gcc/Ccc																																																																														
EP300	0	MSKCC	GRCh37	22	41572357	41572357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	188	553	1	ENST00000263253.7:c.4886C>T	p.Ala1629Val	p.A1629V	ENST00000263253	NM_001429.3	1629	gCg/gTg																																																																														
ATR	0	MSKCC	GRCh37	3	142261565	142261565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	63	466	0	ENST00000350721.4:c.3392del	p.Leu1131TrpfsTer9	p.L1131Wfs*9	ENST00000350721	NM_001184.3	1131	tTg/tg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38963105	38963105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	37	301	0	ENST00000357387.3:c.1439A>G	p.His480Arg	p.H480R	ENST00000357387	NM_152756.3	480	cAt/cGt																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	108	343	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
APC	0	MSKCC	GRCh37	5	112164663	112164664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	88	284	0	ENST00000257430.4:c.1742dupA	p.Glu582GlyfsTer20	p.E582Gfs*20	ENST00000257430	NM_000038.5	579	-/A																																																																														
APC	0	MSKCC	GRCh37	5	112170861	112170861	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	125	459	0	ENST00000257430.4:c.1957A>G	p.Arg653Gly	p.R653G	ENST00000257430	NM_000038.5	653	Agg/Ggg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	104	280	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
MDC1	0	MSKCC	GRCh37	6	30671396	30671396	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	177	514	0	ENST00000376406.3:c.5562+2T>C		p.X1854_splice	ENST00000376406	NM_014641.2	1854																																																																															
FYN	0	MSKCC	GRCh37	6	112035565	112035565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	98	337	0	ENST00000368678.4:c.329A>G	p.Gln110Arg	p.Q110R	ENST00000368678		110	cAa/cGa																																																																														
PMS2	0	MSKCC	GRCh37	7	6043355	6043355	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188006077		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	155	188	4	ENST00000265849.7:c.319C>T	p.Arg107Trp	p.R107W	ENST00000265849	NM_000535.5	107	Cgg/Tgg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453150	140453150	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	108	426	0	ENST00000288602.6:c.1785T>G	p.Phe595Leu	p.F595L	ENST00000288602	NM_004333.4	595	ttT/ttG																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	214	802	2	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372206	55372206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	134	390	2	ENST00000297316.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000297316	NM_022454.3	299	gCg/gTg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	172	599	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
LYN	0	MSKCC	GRCh37	8	56879458	56879458	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	95	513	0	ENST00000519728.1:c.973+2T>C		p.X325_splice	ENST00000519728	NM_002350.3	325																																																																															
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	221	772	0	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
BCOR	0	MSKCC	GRCh37	X	39932804	39932804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	234	327	0	ENST00000378444.4:c.1795G>T	p.Gly599Cys	p.G599C	ENST00000378444	NM_001123385.1	599	Ggc/Tgc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099982	157099987	+	inframe_deletion	In_Frame_Del	DEL	GGCGGC	GGCGGC	-			P-0031050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	56	266	0	ENST00000346085.5:c.939_944delCGGCGG	p.Gly318_Gly319del	p.G318_G319del	ENST00000346085	NM_020732.3	307	GGCGGC/-																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	241	582	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	266	504	6	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	237	503	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112170813	112170813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	363	681	5	ENST00000257430.4:c.1909G>A	p.Gly637Arg	p.G637R	ENST00000257430	NM_000038.5	637	Ggg/Agg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	541	479	5	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123276974	123276974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	219	419	2	ENST00000358487.5:c.943G>A	p.Ala315Thr	p.A315T	ENST00000358487	NM_000141.4	315	Gcc/Acc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120132	70120133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	126	185	0	ENST00000245479.2:c.1137_1138dupGC	p.His380ArgfsTer4	p.H380Rfs*4	ENST00000245479	NM_000346.3	378	-/GC																																																																														
BIRC3	0	MSKCC	GRCh37	11	102206715	102206715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	261	463	4	ENST00000263464.3:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000263464	NM_001165.4	448	cGg/cAg																																																																														
LATS2	0	MSKCC	GRCh37	13	21619857	21619857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	720	488	3	ENST00000382592.4:c.309G>A	p.Met103Ile	p.M103I	ENST00000382592	NM_014572.2	103	atG/atA																																																																														
RNF43	0	MSKCC	GRCh37	17	56436025	56436025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	266	497	3	ENST00000407977.2:c.1112G>A	p.Arg371Gln	p.R371Q	ENST00000407977		371	cGa/cAa																																																																														
SOX9	0	MSKCC	GRCh37	17	70119787	70119788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	461	688	6	ENST00000245479.2:c.790dup	p.Arg264LysfsTer32	p.R264Kfs*32	ENST00000245479	NM_000346.3	263	-/A																																																																														
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	660	876	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0031189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	95	381	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0031189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	645	795	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
TET1	0	MSKCC	GRCh37	10	70446140	70446140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	316	600	0	ENST00000373644.4:c.5080C>A	p.Arg1694Ser	p.R1694S	ENST00000373644	NM_030625.2	1694	Cgc/Agc																																																																														
TSC2	0	MSKCC	GRCh37	16	2121860	2121873	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAGGCCCCGCCG	TGCAGGCCCCGCCG	-			P-0031189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	310	501	0	ENST00000219476.3:c.2025_2038del	p.Gly676AlafsTer22	p.G676Afs*22	ENST00000219476	NM_000548.3	674	ccTGCAGGCCCCGCCGtg/cctg																																																																														
SLX4	0	MSKCC	GRCh37	16	3633302	3633302	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	351	924	0	ENST00000294008.3:c.4949G>C	p.Gly1650Ala	p.G1650A	ENST00000294008	NM_032444.2	1650	gGa/gCa																																																																														
ROS1	0	MSKCC	GRCh37	6	117708087	117708087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	369	710	0	ENST00000368508.3:c.2090G>T	p.Gly697Val	p.G697V	ENST00000368508	NM_002944.2	697	gGa/gTa																																																																														
PREX2	0	MSKCC	GRCh37	8	68931899	68931899	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	304	718	0	ENST00000288368.4:c.329T>G	p.Leu110Arg	p.L110R	ENST00000288368	NM_024870.2	110	cTt/cGt																																																																														
AR	0	MSKCC	GRCh37	X	66765268	66765268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2330	177	354	0	ENST00000374690.3:c.280G>A	p.Asp94Asn	p.D94N	ENST00000374690	NM_000044.3	94	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	264	836	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0031190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	64	260	1	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0031190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	64	260	1	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178941974	178942485	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTACTTTCTTGGGGGTTTCATTGATATATTTAAATAAATACCTTTTCTGGATAAAATCTTGAGAAAAGTAAAAATGTCTGTTATAATTAGAATGTTCAATAATTTATGCTTCTCTCTCTCATTCTCCTACCCTCAAAATAAGAGTAGTATATCTTAAGTTCAGTACTGCCTTTATTCAGAATGAGTTTTTACTACTTAAATAATACAGTTTAAAACCTTCTATGGCCAGAATTTCTGTTACCATAGGATAAGAAATGGAAATGTAATATCTGTAAAACTAATGATATATCTCTATATATTTGTTGGAAATTCATATGCAATTATATAACTTTTAAAACTTTTAGTTTTTTTTATACTCTTTAGGAATGGATTCCTAAATAAAAATTGAGGTGAAAGTTGTAAATCTTTGTAACACTTCAAAAAGCTATATTGTATTTATATTTTAAAATAAATTTCAGGGTAAAATAATAATAAAGCAAAGGTACCTAGTAAAGTTTTTAACTATTTTAA	AGGTACTTTCTTGGGGGTTTCATTGATATATTTAAATAAATACCTTTTCTGGATAAAATCTTGAGAAAAGTAAAAATGTCTGTTATAATTAGAATGTTCAATAATTTATGCTTCTCTCTCTCATTCTCCTACCCTCAAAATAAGAGTAGTATATCTTAAGTTCAGTACTGCCTTTATTCAGAATGAGTTTTTACTACTTAAATAATACAGTTTAAAACCTTCTATGGCCAGAATTTCTGTTACCATAGGATAAGAAATGGAAATGTAATATCTGTAAAACTAATGATATATCTCTATATATTTGTTGGAAATTCATATGCAATTATATAACTTTTAAAACTTTTAGTTTTTTTTATACTCTTTAGGAATGGATTCCTAAATAAAAATTGAGGTGAAAGTTGTAAATCTTTGTAACACTTCAAAAAGCTATATTGTATTTATATTTTAAAATAAATTTCAGGGTAAAATAATAATAAAGCAAAGGTACCTAGTAAAGTTTTTAACTATTTTAA	-			P-0031190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	110	499	0	ENST00000263967.3:c.2294+2_2295del		p.X765_splice	ENST00000263967	NM_006218.2	765																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178942609	178943631	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAAGGAAGAGTATTAATGAGCTTATGATGCATGAATTTAGCTATCTTTTTATACACAGGATATTTATGAACCATGAAAACTACTGAAAGCCATTTAAGGAATATACACATGTGATAAAATATGTAATATTTATCAGATGTCTTGACCTTTGAAATATGCATGTATAATCAATGAAAAGAAAAGAAGTACTAGGTTTAGATCAGAAGTCCTGAAATCAGTTTTTTGTTTTTTCTTTTTCCTGTTCCCTGCCTCCAACCCCCCTCCCGTGGACCTGTGTAGAGAAGTATTTTTTGTTGTTGTTTTGGTTTTTTTTTTAATCAGTTTCTAATTATCATTTGCTTAGCTGTGTGAGTATCCATTCATTCCATAAATATTCTATGTGCTAGGCCCTGGGGTTTTAGCAGTGAAGAAAACAGAATCCCTGCCCTCTTGGAGCTTACAGCCTAACAGAGAAAAGAGGGACATTAAATGAATAATTACAAAAATAAAATTGCAAGCATGTTGCAAAGGAAGAGTGTAGTCTGCTCAGGAACCATATAAAAGAAGGTACTTATATGGAGGAAAAGGCTATGGGGGGAGTGAAGGAGGATCATGGATGGGTTTTCAATAGGAAATGACATTTCAGCAGTGAATTCTGTTGATCCCAATATTTTAATATAAACATGTGTTCAAATTTAAGGATTCAGAAAAATAATTACTATAAATGCTTTAATTAAAAATTTTTGTGAGATGCATGCTCACTTATCCTACATTGTTATTCAAATATGTTTATGCAAAGACTTTAAAAGTGGATTTAAGAATCAGAATATTAAGAGCCATTTGTAGTGGTGCATGCTTGTGATCCCAGTTGCTCTGGAGGATTACTTGAGCCCAGGAGTTTTAGACCAGCCTGGGCAACTTAGCAAGACCCCATCTCAAAAAATTATAAATACATTAATAAAGCTATGTAAAGGCTTTGAGTGGACATATACACTCATTTATAAATTTTTTGAAAAGAAATCAGAATATTGCTTTCCTGAAG	GGTAAGGAAGAGTATTAATGAGCTTATGATGCATGAATTTAGCTATCTTTTTATACACAGGATATTTATGAACCATGAAAACTACTGAAAGCCATTTAAGGAATATACACATGTGATAAAATATGTAATATTTATCAGATGTCTTGACCTTTGAAATATGCATGTATAATCAATGAAAAGAAAAGAAGTACTAGGTTTAGATCAGAAGTCCTGAAATCAGTTTTTTGTTTTTTCTTTTTCCTGTTCCCTGCCTCCAACCCCCCTCCCGTGGACCTGTGTAGAGAAGTATTTTTTGTTGTTGTTTTGGTTTTTTTTTTAATCAGTTTCTAATTATCATTTGCTTAGCTGTGTGAGTATCCATTCATTCCATAAATATTCTATGTGCTAGGCCCTGGGGTTTTAGCAGTGAAGAAAACAGAATCCCTGCCCTCTTGGAGCTTACAGCCTAACAGAGAAAAGAGGGACATTAAATGAATAATTACAAAAATAAAATTGCAAGCATGTTGCAAAGGAAGAGTGTAGTCTGCTCAGGAACCATATAAAAGAAGGTACTTATATGGAGGAAAAGGCTATGGGGGGAGTGAAGGAGGATCATGGATGGGTTTTCAATAGGAAATGACATTTCAGCAGTGAATTCTGTTGATCCCAATATTTTAATATAAACATGTGTTCAAATTTAAGGATTCAGAAAAATAATTACTATAAATGCTTTAATTAAAAATTTTTGTGAGATGCATGCTCACTTATCCTACATTGTTATTCAAATATGTTTATGCAAAGACTTTAAAAGTGGATTTAAGAATCAGAATATTAAGAGCCATTTGTAGTGGTGCATGCTTGTGATCCCAGTTGCTCTGGAGGATTACTTGAGCCCAGGAGTTTTAGACCAGCCTGGGCAACTTAGCAAGACCCCATCTCAAAAAATTATAAATACATTAATAAAGCTATGTAAAGGCTTTGAGTGGACATATACACTCATTTATAAATTTTTTGAAAAGAAATCAGAATATTGCTTTCCTGAAG	-			P-0031190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	60	497	0	ENST00000263967.3:c.2416_2417-119del		p.X806_splice	ENST00000263967	NM_006218.2	806																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178947231	178947791	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGTTGTATTATTCTTTCTTCCTATGTTAATCTAAGTTTTTGTTAGATGAGTCTGTCGGTGTTTGTGTATTCCTCTGAGTTAGAACAGAGAAAACAATTGTACTTTCTATGGAAAAAAATATGCTCAACCTTTGAAATATTTGATGTTAATGGATTTAAATGATTATAATTACTTTTAATTTGGTAAAATCTTAAACATTCATCTTATGTATTATCTAAAATGTATTGTTATTGCTTATTCTTTTTAAAACAAATGAATATTGCACATTCAAAATTTTATTTCTAATTCATTGTTAAAATGATTAGAAAAAAATAATTTTAATGACATGCTAAGTATTTTTTCACATGAAGAATTATGCTTTGGTCAGGGAACATCTGGAAATTTCCTTAGAAACCCATGAAAACTTCACAATCTCAAAATCTTTGGACATAATTTCCTTATTCGTTGTCAGTGATTGTTTTCATTGTTTAAATGGAAACTTGCACCCTGTTTTCTTTTCTCAAGTTGGCCTGAATCACTATATTTCCATACTACTCATGAGGTGTTTATTCTTTGTAG	GTGAGTTGTATTATTCTTTCTTCCTATGTTAATCTAAGTTTTTGTTAGATGAGTCTGTCGGTGTTTGTGTATTCCTCTGAGTTAGAACAGAGAAAACAATTGTACTTTCTATGGAAAAAAATATGCTCAACCTTTGAAATATTTGATGTTAATGGATTTAAATGATTATAATTACTTTTAATTTGGTAAAATCTTAAACATTCATCTTATGTATTATCTAAAATGTATTGTTATTGCTTATTCTTTTTAAAACAAATGAATATTGCACATTCAAAATTTTATTTCTAATTCATTGTTAAAATGATTAGAAAAAAATAATTTTAATGACATGCTAAGTATTTTTTCACATGAAGAATTATGCTTTGGTCAGGGAACATCTGGAAATTTCCTTAGAAACCCATGAAAACTTCACAATCTCAAAATCTTTGGACATAATTTCCTTATTCGTTGTCAGTGATTGTTTTCATTGTTTAAATGGAAACTTGCACCCTGTTTTCTTTTCTCAAGTTGGCCTGAATCACTATATTTCCATACTACTCATGAGGTGTTTATTCTTTGTAG	-			P-0031190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	60	278	0	ENST00000263967.3:c.2666+1_2667-1del		p.X889_splice	ENST00000263967	NM_006218.2	889																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178947910	178948012	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTAATGGTTTTCTCTGTTTAAAATGTTTTGGTGTTCTTAATTTATTCAAGACATTTTGTATCTGCATATATCAAACTATAACATAATTTCTTATTTTTGAAAG	GTAATGGTTTTCTCTGTTTAAAATGTTTTGGTGTTCTTAATTTATTCAAGACATTTTGTATCTGCATATATCAAACTATAACATAATTTCTTATTTTTGAAAG	-			P-0031190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	95	479	0	ENST00000263967.3:c.2784+1_2785-1del		p.X928_splice	ENST00000263967	NM_006218.2	928																																																																															
APC	0	MSKCC	GRCh37	5	112164663	112164664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAAAGGTTAA			P-0031190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	137	446	0	ENST00000257430.4:c.1743+2_1743+3insTAAAAAAAGGT		p.-579fs	ENST00000257430	NM_000038.5	579	-/AAAAAGGTTAA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	237	485	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
FGFR1	0	MSKCC	GRCh37	8	38285455	38285455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	77	563	0	ENST00000425967.3:c.698G>C	p.Arg233Thr	p.R233T	ENST00000425967	NM_001174067.1	233	aGa/aCa																																																																														
RBM10	0	MSKCC	GRCh37	X	47040683	47040683	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	191	321	0	ENST00000329236.7:c.1084C>T	p.Gln362Ter	p.Q362*	ENST00000329236	NM_001204466.1	362	Cag/Tag																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741860	145741860	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	110	657	0	ENST00000428558.2:c.643G>C	p.Glu215Gln	p.E215Q	ENST00000428558	NM_004260.3	215	Gag/Cag																																																																														
CDK8	0	MSKCC	GRCh37	13	26975422	26975422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	67	401	0	ENST00000381527.3:c.1048C>G	p.Gln350Glu	p.Q350E	ENST00000381527	NM_001260.1	350	Caa/Gaa																																																																														
RAD51D	0	MSKCC	GRCh37	17	33430490	33430490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	251	655	0	ENST00000335858.7:c.314G>T	p.Gly105Val	p.G105V	ENST00000335858	NM_133629.2	105	gGa/gTa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419873	41419873	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	33	521	0	ENST00000373198.4:c.448G>C	p.Glu150Gln	p.E150Q	ENST00000373198	NM_133170.3	150	Gag/Cag																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42839810	42839810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	72	401	0	ENST00000398585.3:c.1429G>A	p.Asp477Asn	p.D477N	ENST00000398585	NM_001135099.1	477	Gac/Aac																																																																														
ATR	0	MSKCC	GRCh37	3	142217448	142217448	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	65	428	0	ENST00000350721.4:c.5549A>G	p.Tyr1850Cys	p.Y1850C	ENST00000350721	NM_001184.3	1850	tAt/tGt																																																																														
WWTR1	0	MSKCC	GRCh37	3	149374909	149374909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	109	519	0	ENST00000360632.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000360632	NM_015472.4	62	tCg/tTg																																																																														
MDC1	0	MSKCC	GRCh37	6	30673448	30673448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	133	494	1	ENST00000376406.3:c.3512C>T	p.Ser1171Phe	p.S1171F	ENST00000376406	NM_014641.2	1171	tCc/tTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518003	8518003	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	265	404	0	ENST00000356435.5:c.1388T>A	p.Val463Asp	p.V463D	ENST00000356435		463	gTc/gAc																																																																														
CRLF2	0	MSKCC	GRCh37	X	1321382	1321382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	153	455	1	ENST00000381566.1:c.373G>T	p.Val125Leu	p.V125L	ENST00000381566		125	Gtg/Ttg																																																																														
BCOR	0	MSKCC	GRCh37	X	39913164	39913164	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	125	148	0	ENST00000378444.4:c.4951A>G	p.Asn1651Asp	p.N1651D	ENST00000378444	NM_001123385.1	1651	Aac/Gac																																																																														
BTK	0	MSKCC	GRCh37	X	100615625	100615625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	364	272	0	ENST00000308731.7:c.707G>T	p.Arg236Leu	p.R236L	ENST00000308731	NM_000061.2	236	cGg/cTg																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	104	648	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
APC	0	MSKCC	GRCh37	5	112176042	112176046	+	frameshift_variant	Frame_Shift_Del	DEL	CAACA	CAACA	ACT			P-0031192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	75	510	1	ENST00000257430.4:c.4751_4755delinsACT	p.Pro1584HisfsTer2	p.P1584Hfs*2	ENST00000257430	NM_000038.5	1584	cCAACA/cACT																																																																														
RAD50	0	MSKCC	GRCh37	5	131977918	131977918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	88	615	0	ENST00000265335.6:c.3801C>G	p.Ile1267Met	p.I1267M	ENST00000265335		1267	atC/atG																																																																														
PREX2	0	MSKCC	GRCh37	8	68992697	68992697	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	109	711	0	ENST00000288368.4:c.1662C>G	p.Phe554Leu	p.F554L	ENST00000288368	NM_024870.2	554	ttC/ttG																																																																														
KLF4	0	MSKCC	GRCh37	9	110248093	110248093	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	154	553	0	ENST00000374672.4:c.1379A>G	p.Lys460Arg	p.K460R	ENST00000374672	NM_004235.4	460	aAa/aGa																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	148	632	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	99	401	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	142	749	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	128	537	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	89	442	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																																																														
PTEN	0	MSKCC	GRCh37	10	89653807	89653807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	127	545	0	ENST00000371953.3:c.105G>A	p.Met35Ile	p.M35I	ENST00000371953	NM_000314.4	35	atG/atA																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	93	487	2	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505443	157505443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	185	556	0	ENST00000346085.5:c.3428del	p.Lys1143SerfsTer68	p.K1143Sfs*68	ENST00000346085	NM_020732.3	1142	Aaa/aa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56170949	56170949	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	82	329	0	ENST00000399503.3:c.1780del	p.Ala594ProfsTer62	p.A594Pfs*62	ENST00000399503	NM_005921.1	593	Ggg/gg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	130	534	3	ENST00000318789.4:c.1240delC	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg																																																																														
MCL1	0	MSKCC	GRCh37	1	150551952	150551952	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	152	526	0	ENST00000369026.2:c.55delG	p.Ala19ProfsTer30	p.A19Pfs*30	ENST00000369026	NM_021960.4	19	Gcc/cc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	134	576	6	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098959	178098959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	96	397	0	ENST00000397062.3:c.86A>G	p.Asp29Gly	p.D29G	ENST00000397062	NM_006164.4	29	gAt/gGt																																																																														
CXCR4	0	MSKCC	GRCh37	2	136873205	136873205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	93	438	0	ENST00000241393.3:c.293C>T	p.Ala98Val	p.A98V	ENST00000241393	NM_003467.2	98	gCc/gTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214714	36214714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	98	547	0	ENST00000222270.7:c.3145del	p.Ala1049ArgfsTer133	p.A1049Rfs*133	ENST00000222270	NM_014727.1	1047	cGg/cg																																																																														
MTOR	0	MSKCC	GRCh37	1	11193214	11193214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	184	681	1	ENST00000361445.4:c.5287G>A	p.Gly1763Ser	p.G1763S	ENST00000361445	NM_004958.3	1763	Ggc/Agc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099119	27099120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	118	462	0	ENST00000324856.7:c.3536dup	p.Met1179IlefsTer14	p.M1179Ifs*14	ENST00000324856	NM_006015.4	1179	atg/aTtg																																																																														
SESN2	0	MSKCC	GRCh37	1	28599194	28599194	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	169	809	0	ENST00000253063.3:c.640T>G	p.Cys214Gly	p.C214G	ENST00000253063	NM_031459.4	214	Tgt/Ggt																																																																														
TET1	0	MSKCC	GRCh37	10	70406673	70406673	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	65	641	0	ENST00000373644.4:c.4187A>G	p.Asn1396Ser	p.N1396S	ENST00000373644	NM_030625.2	1396	aAt/aGt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717689	89717689	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	182	518	1	ENST00000371953.3:c.714del	p.Phe238LeufsTer18	p.F238Lfs*18	ENST00000371953	NM_000314.4	238	ttC/tt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37883773	37883774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	86	800	0	ENST00000269571.5:c.3391dup	p.Leu1131ProfsTer8	p.L1131Pfs*8	ENST00000269571		1129	gcc/gCcc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120419	70120419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	234	892	0	ENST00000245479.2:c.1421G>A	p.Arg474His	p.R474H	ENST00000245479	NM_000346.3	474	cGc/cAc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271796	15271796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	134	768	0	ENST00000263388.2:c.6643C>A	p.Pro2215Thr	p.P2215T	ENST00000263388	NM_000435.2	2215	Cca/Aca																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223502	36223502	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	147	783	2	ENST00000222270.7:c.6056del	p.Gly2019AlafsTer21	p.G2019Afs*21	ENST00000222270	NM_014727.1	2018	Ggg/gg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267330	198267330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	154	675	0	ENST00000335508.6:c.2027G>C	p.Gly676Ala	p.G676A	ENST00000335508	NM_012433.2	676	gGc/gCc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264146	46264146	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	98	402	0	ENST00000371998.3:c.1193T>C	p.Val398Ala	p.V398A	ENST00000371998		398	gTa/gCa																																																																														
ATR	0	MSKCC	GRCh37	3	142238541	142238541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	65	357	0	ENST00000350721.4:c.4352G>T	p.Arg1451Leu	p.R1451L	ENST00000350721	NM_001184.3	1451	cGg/cTg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56181807	56181807	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	114	497	0	ENST00000399503.3:c.4031C>A	p.Ser1344Ter	p.S1344*	ENST00000399503	NM_005921.1	1344	tCa/tAa																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858210	27858210	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	138	655	0	ENST00000359303.2:c.361A>G	p.Met121Val	p.M121V	ENST00000359303	NM_003535.2	121	Atg/Gtg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53231038	53231038	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0031195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	76	667	0	ENST00000375401.3:c.1864T>C	p.Trp622Arg	p.W622R	ENST00000375401	NM_004187.3	622	Tgg/Cgg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	150	619	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	147	695	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																														
PTEN	0	MSKCC	GRCh37	10	89720650	89720650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0031196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	65	211	0	ENST00000371953.3:c.802-1G>A		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
SYK	0	MSKCC	GRCh37	9	93606357	93606357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	121	697	3	ENST00000375746.1:c.177G>T	p.Arg59Ser	p.R59S	ENST00000375746	NM_001174167.1	59	agG/agT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	54	507	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578476	7578477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTGT			P-0031200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	60	759	0	ENST00000269305.4:c.453_454insACACC	p.Pro152ThrfsTer20	p.P152Tfs*20	ENST00000269305	NM_001126112.2	151	-/ACACC																																																																														
CUL3	0	MSKCC	GRCh37	2	225370799	225370799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	93	593	0	ENST00000264414.4:c.1080C>G	p.Phe360Leu	p.F360L	ENST00000264414	NM_003590.4	360	ttC/ttG																																																																														
VHL	0	MSKCC	GRCh37	3	10191474	10191485	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	ATACTCTGAAAG	ATACTCTGAAAG	-			P-0031201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	87	439	0	ENST00000256474.2:c.468_479del	p.Tyr156_Glu160delinsTer	p.Y156_E160delins*	ENST00000256474	NM_000551.3	156	tATACTCTGAAAGag/tag																																																																														
BAP1	0	MSKCC	GRCh37	3	52440297	52440297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	106	645	0	ENST00000460680.1:c.755G>C	p.Arg252Pro	p.R252P	ENST00000460680	NM_004656.3	252	cGt/cCt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	351	655	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	212	545	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89445091	89445091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	198	441	2	ENST00000336596.2:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000336596	NM_005233.5	471	Gag/Aag																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127460	55127460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	428	593	1	ENST00000257290.5:c.248C>T	p.Thr83Met	p.T83M	ENST00000257290	NM_006206.4	83	aCg/aTg																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46509349	46509349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	351	518	0	ENST00000262741.5:c.1382G>A	p.Arg461Lys	p.R461K	ENST00000262741	NM_003629.3	461	aGa/aAa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266049	41266300	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACT	CCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACT	-			P-0031202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	26	344	0	ENST00000349496.5:c.46_241+56del		p.X16_splice	ENST00000349496	NM_001904.3	16																																																																															
IDH2	0	MSKCC	GRCh37	15	90631837	90631837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	165	585	0	ENST00000330062.3:c.516G>T	p.Arg172Ser	p.R172S	ENST00000330062	NM_002168.2	172	agG/agT																																																																														
ELF3	0	MSKCC	GRCh37	1	201984330	201984336	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CACCCAG	CACCCAG	-			P-0031204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	371	641	0	ENST00000359651.3:c.1002-7_1002-1del		p.X334_splice	ENST00000359651		334																																																																															
RET	0	MSKCC	GRCh37	10	43612036	43612036	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	217	831	0	ENST00000355710.3:c.2141A>C	p.Asp714Ala	p.D714A	ENST00000355710	NM_020975.4	714	gAt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	149	779	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
ELF3	0	MSKCC	GRCh37	1	201981292	201981292	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	162	648	0	ENST00000359651.3:c.371A>T	p.Gln124Leu	p.Q124L	ENST00000359651		124	cAg/cTg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32932028	32932033	+	inframe_deletion	In_Frame_Del	DEL	CTCCAA	CTCCAA	-			P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	90	467	0	ENST00000380152.3:c.7767_7772del	p.Ser2590_Asn2591del	p.S2590_N2591del	ENST00000380152		2589	ccCTCCAAt/cct																																																																														
REL	0	MSKCC	GRCh37	2	61149152	61149152	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	53	486	1	ENST00000295025.8:c.1342A>T	p.Arg448Ter	p.R448*	ENST00000295025	NM_002908.2	448	Aga/Tga																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098935	178098935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	98	391	0	ENST00000397062.3:c.110T>C	p.Phe37Ser	p.F37S	ENST00000397062	NM_006164.4	37	tTt/tCt																																																																														
CASP8	0	MSKCC	GRCh37	2	202149566	202149566	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	245	523	0	ENST00000358485.4:c.1007T>A	p.Leu336His	p.L336H	ENST00000358485	NM_001080125.1	336	cTt/cAt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71096085	71096093	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACGCATACC	ACGCATACC	-			P-0031205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	49	310	0	ENST00000318789.4:c.664_664+8del		p.X222_splice	ENST00000318789	NM_032682.5	222																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	231	655	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
FLT4	0	MSKCC	GRCh37	5	180051053	180051053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	203	566	1	ENST00000261937.6:c.1430G>A	p.Arg477Gln	p.R477Q	ENST00000261937	NM_182925.4	477	cGg/cAg																																																																														
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	84	457	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	177	350	0	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	81	364	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	148	462	1	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																														
TERT	0	MSKCC	GRCh37	5	1254510	1254510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	169	672	0	ENST00000310581.5:c.3268G>A	p.Val1090Met	p.V1090M	ENST00000310581	NM_198253.2	1090	Gtg/Atg																																																																														
FLT4	0	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	189	688	2	ENST00000261937.6:c.1267delC	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	196	485	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
B2M	0	MSKCC	GRCh37	15	45007871	45007872	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	137	460	0	ENST00000558401.1:c.319_320delTT	p.Leu107ValfsTer7	p.L107Vfs*7	ENST00000558401	NM_004048.2	106	acTTtg/actg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	99	688	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	51	774	4	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67588927	67588927	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	20	329	0	ENST00000274335.5:c.1020-2A>G		p.X340_splice	ENST00000274335		340																																																																															
KMT2D	0	MSKCC	GRCh37	12	49445203	49445203	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	75	671	1	ENST00000301067.7:c.2263delC	p.Arg755GlyfsTer175	p.R755Gfs*175	ENST00000301067	NM_003482.3	755	Cgg/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7572929	7572929	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	169	521	0	ENST00000269305.4:c.1180T>C	p.Ter394ArgextTer9	p.*394Rext*9	ENST00000269305	NM_001126112.2	394	Tga/Cga																																																																														
INHBA	0	MSKCC	GRCh37	7	41729609	41729609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	174	497	0	ENST00000242208.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000242208	NM_002192.2	307	cGg/cAg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831936	72831936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181722888		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	170	718	2	ENST00000268489.5:c.4645G>A	p.Val1549Ile	p.V1549I	ENST00000268489	NM_006885.3	1549	Gtc/Atc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228119	36228119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201885107		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	168	605	0	ENST00000222270.7:c.7505C>T	p.Pro2502Leu	p.P2502L	ENST00000222270	NM_014727.1	2502	cCg/cTg																																																																														
MUTYH	0	MSKCC	GRCh37	1	45805916	45805916	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	28	542	0	ENST00000372115.3:c.11T>G	p.Leu4Arg	p.L4R	ENST00000372115	NM_001048171.1	4	cTc/cGc																																																																														
SDHC	0	MSKCC	GRCh37	1	161326485	161326485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	51	535	0	ENST00000367975.2:c.260T>C	p.Met87Thr	p.M87T	ENST00000367975	NM_003001.3	87	aTg/aCg																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724750	112724750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	157	519	1	ENST00000369452.4:c.638del	p.Asn213ThrfsTer33	p.N213Tfs*33	ENST00000369452	NM_007373.3	212	Aaa/aa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398282	25398283	+	missense_variant	Missense_Mutation	DNP	CA	CA	GG			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	230	544	0	ENST00000256078.4:c.36_37delinsCC	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	12	ggTGgc/ggCCgc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487946	56487946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	63	638	0	ENST00000267101.3:c.1677G>A	p.Met559Ile	p.M559I	ENST00000267101	NM_001982.3	559	atG/atA																																																																														
POLE	0	MSKCC	GRCh37	12	133218407	133218407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	28	626	0	ENST00000320574.5:c.5204C>T	p.Ala1735Val	p.A1735V	ENST00000320574	NM_006231.2	1735	gCc/gTc																																																																														
LATS2	0	MSKCC	GRCh37	13	21562955	21562955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	85	510	0	ENST00000382592.4:c.964G>A	p.Gly322Ser	p.G322S	ENST00000382592	NM_014572.2	322	Ggt/Agt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32890628	32890628	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	22	397	1	ENST00000380152.3:c.36del	p.Phe12LeufsTer13	p.F12Lfs*13	ENST00000380152		11	Ttt/tt																																																																														
RB1	0	MSKCC	GRCh37	13	48878100	48878100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	121	96	0	ENST00000267163.4:c.52G>A	p.Ala18Thr	p.A18T	ENST00000267163	NM_000321.2	18	Gcg/Acg																																																																														
TSC2	0	MSKCC	GRCh37	16	2105401	2105401	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	125	519	0	ENST00000219476.3:c.482-2A>G		p.X161_splice	ENST00000219476	NM_000548.3	161																																																																															
CDK12	0	MSKCC	GRCh37	17	37627608	37627608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	183	669	0	ENST00000447079.4:c.1523T>C	p.Leu508Pro	p.L508P	ENST00000447079	NM_015083.1	508	cTg/cCg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5214636	5214636	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs532712500		P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	69	721	1	ENST00000357368.4:c.4430G>A	p.Arg1477His	p.R1477H	ENST00000357368	NM_002850.3	1477	cGt/cAt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5215309	5215309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	87	515	0	ENST00000357368.4:c.4309C>T	p.Pro1437Ser	p.P1437S	ENST00000357368	NM_002850.3	1437	Ccc/Tcc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098482	11098482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	19	327	0	ENST00000344626.4:c.1000G>A	p.Gly334Arg	p.G334R	ENST00000344626	NM_003072.3	334	Ggg/Agg																																																																														
AKT2	0	MSKCC	GRCh37	19	40747882	40747882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	186	608	0	ENST00000392038.2:c.536C>T	p.Ala179Val	p.A179V	ENST00000392038	NM_001626.4	179	gCc/gTc																																																																														
ALK	0	MSKCC	GRCh37	2	30143058	30143058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	25	601	0	ENST00000389048.3:c.468del	p.Glu160ArgfsTer26	p.E160Rfs*26	ENST00000389048	NM_004304.4	156	ggG/gg																																																																														
IRS1	0	MSKCC	GRCh37	2	227662010	227662010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	87	638	0	ENST00000305123.5:c.1445A>G	p.His482Arg	p.H482R	ENST00000305123	NM_005544.2	482	cAc/cGc																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45657087	45657087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	33	343	0	ENST00000407780.3:c.69G>T	p.Lys23Asn	p.K23N	ENST00000407780	NM_001283052.1	23	aaG/aaT																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191511	185191511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	46	616	0	ENST00000265026.3:c.2392C>T	p.Pro798Ser	p.P798S	ENST00000265026	NM_004721.4	798	Cct/Tct																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356424	66356424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	158	346	0	ENST00000273854.3:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000273854	NM_004439.5	358	cCc/cTc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153271215	153271215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	90	393	0	ENST00000281708.4:c.563G>A	p.Cys188Tyr	p.C188Y	ENST00000281708	NM_033632.3	188	tGc/tAc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168740	56168740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	294	492	1	ENST00000399503.3:c.1594C>T	p.Arg532Ter	p.R532*	ENST00000399503	NM_005921.1	532	Cga/Tga																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149502612	149502612	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	80	315	0	ENST00000261799.4:c.2176del	p.Leu726CysfsTer7	p.L726Cfs*7	ENST00000261799	NM_002609.3	726	Ctg/tg																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324916	31324917	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	147	471	0	ENST00000412585.2:c.19dup	p.Arg7ProfsTer92	p.R7Pfs*92	ENST00000412585	NM_005514.6	7	cga/cCga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527947	157527947	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	68	575	0	ENST00000346085.5:c.5672A>G	p.Asp1891Gly	p.D1891G	ENST00000346085	NM_020732.3	1891	gAc/gGc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450364	50450364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	182	554	2	ENST00000331340.3:c.548G>A	p.Arg183His	p.R183H	ENST00000331340	NM_006060.4	183	cGc/cAc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468260	50468260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	70	589	0	ENST00000331340.3:c.1495A>G	p.Ser499Gly	p.S499G	ENST00000331340	NM_006060.4	499	Agc/Ggc																																																																														
BRAF	0	MSKCC	GRCh37	7	140534466	140534466	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	102	549	0	ENST00000288602.6:c.447del	p.Lys150SerfsTer32	p.K150Sfs*32	ENST00000288602	NM_004333.4	149	ccC/cc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874078	151874078	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	128	563	0	ENST00000262189.6:c.8460T>A	p.Asn2820Lys	p.N2820K	ENST00000262189	NM_170606.2	2820	aaT/aaA																																																																														
JAK2	0	MSKCC	GRCh37	9	5126697	5126697	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	150	387	0	ENST00000381652.3:c.3305T>C	p.Met1102Thr	p.M1102T	ENST00000381652	NM_004972.3	1102	aTg/aCg																																																																														
BCOR	0	MSKCC	GRCh37	X	39933031	39933031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	232	739	0	ENST00000378444.4:c.1568A>G	p.Lys523Arg	p.K523R	ENST00000378444	NM_001123385.1	523	aAa/aGa																																																																														
MED12	0	MSKCC	GRCh37	X	70353061	70353061	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	30	438	0	ENST00000374080.3:c.4616T>C	p.Leu1539Pro	p.L1539P	ENST00000374080		1539	cTg/cCg																																																																														
ATRX	0	MSKCC	GRCh37	X	76855286	76855286	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	16	376	0	ENST00000373344.5:c.5701T>C	p.Tyr1901His	p.Y1901H	ENST00000373344	NM_000489.3	1901	Tat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	647	525	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RAD50	0	MSKCC	GRCh37	5	131976439	131976439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	271	690	0	ENST00000265335.6:c.3694G>A	p.Glu1232Lys	p.E1232K	ENST00000265335		1232	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68844139	68844139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	264	690	0	ENST00000261769.5:c.727G>C	p.Glu243Gln	p.E243Q	ENST00000261769	NM_004360.3	243	Gag/Cag																																																																														
MRE11A	0	MSKCC	GRCh37	11	94209488	94209488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	164	485	0	ENST00000323929.3:c.626C>T	p.Ser209Phe	p.S209F	ENST00000323929	NM_005591.3	209	tCt/tTt																																																																														
ELF3	0	MSKCC	GRCh37	1	201982329	201982329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1471	310	822	0	ENST00000359651.3:c.708G>C	p.Lys236Asn	p.K236N	ENST00000359651		236	aaG/aaC																																																																														
H3F3A	0	MSKCC	GRCh37	1	226253394	226253394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	101	227	0	ENST00000366813.1:c.166C>G	p.Gln56Glu	p.Q56E	ENST00000366813		56	Cag/Gag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906690	32906690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	43	622	0	ENST00000380152.3:c.1075G>A	p.Glu359Lys	p.E359K	ENST00000380152		359	Gaa/Aaa																																																																														
SLX4	0	MSKCC	GRCh37	16	3640164	3640164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	380	977	0	ENST00000294008.3:c.3475G>A	p.Glu1159Lys	p.E1159K	ENST00000294008	NM_032444.2	1159	Gag/Aag																																																																														
CYLD	0	MSKCC	GRCh37	16	50816324	50816324	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	223	609	0	ENST00000398568.2:c.1764G>C	p.Lys588Asn	p.K588N	ENST00000398568	NM_001042412.1	588	aaG/aaC																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351830	89351830	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	67	918	0	ENST00000301030.4:c.1120G>C	p.Glu374Gln	p.E374Q	ENST00000301030	NM_001256183.1	374	Gaa/Caa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351884	89351884	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	64	944	0	ENST00000301030.4:c.1066G>C	p.Asp356His	p.D356H	ENST00000301030	NM_001256183.1	356	Gac/Cac																																																																														
TP53	0	MSKCC	GRCh37	17	7578456	7578465	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGACGCGG	GCGGACGCGG	-			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	609	782	0	ENST00000269305.4:c.465_474del	p.Arg156ProfsTer11	p.R156Pfs*11	ENST00000269305	NM_001126112.2	155	acCCGCGTCCGC/ac																																																																														
GNA11	0	MSKCC	GRCh37	19	3113385	3113385	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	63	702	0	ENST00000078429.4:c.379C>G	p.Gln127Glu	p.Q127E	ENST00000078429	NM_002067.2	127	Cag/Gag																																																																														
SETD2	0	MSKCC	GRCh37	3	47129691	47129691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	243	537	0	ENST00000409792.3:c.5189C>G	p.Ser1730Cys	p.S1730C	ENST00000409792	NM_014159.6	1730	tCt/tGt																																																																														
ATR	0	MSKCC	GRCh37	3	142269135	142269135	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	177	409	0	ENST00000350721.4:c.2815G>T	p.Glu939Ter	p.E939*	ENST00000350721	NM_001184.3	939	Gaa/Taa																																																																														
TAP1	0	MSKCC	GRCh37	6	32815305	32815305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	334	816	0	ENST00000354258.4:c.2068C>A	p.Gln690Lys	p.Q690K	ENST00000354258	NM_000593.5	690	Cag/Aag																																																																														
FYN	0	MSKCC	GRCh37	6	112035614	112035614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	164	538	0	ENST00000368678.4:c.280G>A	p.Glu94Lys	p.E94K	ENST00000368678		94	Gaa/Aaa																																																																														
RAD21	0	MSKCC	GRCh37	8	117868444	117868444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	294	663	0	ENST00000297338.2:c.898G>A	p.Glu300Lys	p.E300K	ENST00000297338	NM_006265.2	300	Gag/Aag																																																																														
MAPK1	0	MSKCC	GRCh37	22	22221645	22221647	+	stop_gained	Nonsense_Mutation	ONP	GAG	GAG	TAA			P-0031208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	111	296	1	ENST00000215832.6:c.84_86delinsTTA	p.Ser29Ter	p.S29*	ENST00000215832	NM_002745.4	28	ctCTCg/ctTTAg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0006358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	188	321	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
MLL3	0	MSKCC	GRCh37	7	151902290	151902290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	27	64	0	ENST00000262189.6:c.3862C>T	p.Arg1288Trp	p.R1288W	ENST00000262189	NM_170606.2	1288	Cgg/Tgg																																																																														
BCL6	0	MSKCC	GRCh37	3	187447774	187447774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	109	234	0	ENST00000232014.4:c.419G>A	p.Arg140His	p.R140H	ENST00000232014	NM_001130845.1	140	cGt/cAt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513012	106513012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	126	310	0	ENST00000359195.3:c.2026G>A	p.Ala676Thr	p.A676T	ENST00000359195	NM_002649.2	676	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0030980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	282	479	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
PAK7	0	MSKCC	GRCh37	20	9538257	9538257	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	34	382	0	ENST00000353224.5:c.1741C>T	p.Arg581Trp	p.R581W	ENST00000353224	NM_177990.2	581	Cgg/Tgg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032602	12032604	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GTG	GTG	-			P-0030980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	72	340	0	ENST00000353533.5:c.1040+1_1040+3del		p.LCdel	ENST00000353533	NM_003010.3	346	ttGTGc/ttc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266039	41266305	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAA	GGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAA	-			P-0030980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	31	180	0	ENST00000349496.5:c.37_241+62del		p.X13_splice	ENST00000349496	NM_001904.3	13																																																																															
WHSC1L1	0	MSKCC	GRCh37	8	38137179	38137187	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGGCATC	GCCGGCATC	A			P-0030980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	64	389	0	ENST00000317025.8:c.3631_3639delinsT	p.Asp1211SerfsTer14	p.D1211Sfs*14	ENST00000317025	NM_023034.1	1211	GATGCCGGC/T																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	95	170	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
STK11	0	MSKCC	GRCh37	19	1222986	1222986	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0031071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			203	172	357	0	ENST00000326873.7:c.923G>T	p.Trp308Leu	p.W308L	ENST00000326873	NM_000455.4	308	tGg/tTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438583	49438583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	188	520	0	ENST00000301067.7:c.4907G>T	p.Gly1636Val	p.G1636V	ENST00000301067	NM_003482.3	1636	gGc/gTc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346378	89346378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	122	384	0	ENST00000301030.4:c.6572C>T	p.Pro2191Leu	p.P2191L	ENST00000301030	NM_001256183.1	2191	cCt/cTt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210796	2210797	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0031071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	162	389	0	ENST00000398665.3:c.1293_1294del	p.Ala432ThrfsTer121	p.A432Tfs*121	ENST00000398665	NM_032482.2	431	acTGca/acca																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602452	10602452	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	188	426	0	ENST00000171111.5:c.1126G>C	p.Ala376Pro	p.A376P	ENST00000171111	NM_203500.1	376	Gcc/Ccc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138480	11138480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	128	299	0	ENST00000344626.4:c.3236C>G	p.Ser1079Trp	p.S1079W	ENST00000344626	NM_003072.3	1079	tCg/tGg																																																																														
IL7R	0	MSKCC	GRCh37	5	35876137	35876137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	125	247	0	ENST00000303115.3:c.929G>A	p.Arg310Lys	p.R310K	ENST00000303115	NM_002185.3	310	aGg/aAg																																																																														
INHBA	0	MSKCC	GRCh37	7	41730099	41730099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031071-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	115	181	0	ENST00000242208.4:c.430G>T	p.Gly144Cys	p.G144C	ENST00000242208	NM_002192.2	144	Ggc/Tgc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274018	10274018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	168	613	4	ENST00000330684.3:c.251C>T	p.Thr84Met	p.T84M	ENST00000330684	NM_001134407.1	84	aCg/aTg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198262742	198262742	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	308	362	0	ENST00000335508.6:c.3233T>G	p.Val1078Gly	p.V1078G	ENST00000335508	NM_012433.2	1078	gTc/gGc																																																																														
EP300	0	MSKCC	GRCh37	22	41545877	41545877	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	196	609	0	ENST00000263253.7:c.2492C>A	p.Ser831Ter	p.S831*	ENST00000263253	NM_001429.3	831	tCa/tAa																																																																														
MET	0	MSKCC	GRCh37	7	116412027	116412042	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AGCTACTTTTCCAGAA	AGCTACTTTTCCAGAA	-			P-0031076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	875	565	0	ENST00000397752.3:c.3012_3027del	p.Ala1005IlefsTer19	p.A1005Ifs*19	ENST00000397752	NM_000245.2	1004	cgAGCTACTTTTCCAGAA/cg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	95	143	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	0	MSKCC	GRCh37	6	36651879	36651879	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0031079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	316	359	0	ENST00000244741.5:c.1A>G	p.Met1?	p.M1?	ENST00000244741	NM_000389.4	1	Atg/Gtg																																																																														
CUL3	0	MSKCC	GRCh37	2	225376227	225376227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	124	364	0	ENST00000264414.4:c.727G>A	p.Glu243Lys	p.E243K	ENST00000264414	NM_003590.4	243	Gaa/Aaa																																																																														
RB1	0	MSKCC	GRCh37	13	49039462	49039462	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	199	445	0	ENST00000267163.4:c.2447C>G	p.Ser816Ter	p.S816*	ENST00000267163	NM_000321.2	816	tCa/tGa																																																																														
CUL3	0	MSKCC	GRCh37	2	225376218	225376218	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	133	399	0	ENST00000264414.4:c.736G>C	p.Glu246Gln	p.E246Q	ENST00000264414	NM_003590.4	246	Gaa/Caa																																																																														
BAP1	0	MSKCC	GRCh37	3	52436684	52436684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	206	490	0	ENST00000460680.1:c.1990G>A	p.Asp664Asn	p.D664N	ENST00000460680	NM_004656.3	664	Gac/Aac																																																																														
KIT	3815	MSKCC	GRCh37	4	55593609	55593611	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-	rs121913685		P-0031080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	242	346	0	ENST00000288135.5:c.1679_1681del	p.Val560del	p.V560del	ENST00000288135	NM_000222.2	559	GTT/-																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0031081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	220	443	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RB1	0	MSKCC	GRCh37	13	48919295	48919295	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0031081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	68	189	0	ENST00000267163.4:c.460A>T	p.Lys154Ter	p.K154*	ENST00000267163	NM_000321.2	154	Aag/Tag																																																																														
JAK2	0	MSKCC	GRCh37	9	5050781	5050781	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0031081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	117	389	1	ENST00000381652.3:c.564A>T	p.Arg188Ser	p.R188S	ENST00000381652	NM_004972.3	188	agA/agT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	74	123	0				ENST00000310581	NM_198253.2																																																																																
RPTOR	0	MSKCC	GRCh37	17	78681777	78681777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	89	464	0	ENST00000306801.3:c.485G>A	p.Gly162Glu	p.G162E	ENST00000306801	NM_020761.2	162	gGg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7574002	7574002	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	283	496	0	ENST00000269305.4:c.1025delG	p.Arg342GlnfsTer3	p.R342Qfs*3	ENST00000269305	NM_001126112.2	342	cGa/ca																																																																														
STAG2	0	MSKCC	GRCh37	X	123200023	123200023	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0031082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	67	170	0	ENST00000218089.9:c.2097-2A>G		p.X699_splice	ENST00000218089	NM_001042749.1	699																																																																															
FLT3	0	MSKCC	GRCh37	13	28609720	28609720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	86	498	0	ENST00000241453.7:c.1509G>A	p.Met503Ile	p.M503I	ENST00000241453	NM_004119.2	503	atG/atA																																																																														
MALT1	0	MSKCC	GRCh37	18	56363669	56363669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	62	367	0	ENST00000348428.3:c.448G>A	p.Ala150Thr	p.A150T	ENST00000348428	NM_006785.3	150	Gca/Aca																																																																														
STK11	0	MSKCC	GRCh37	19	1206893	1206913	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	TCCAGGACCCTGGGTCCAGCA	TCCAGGACCCTGGGTCCAGCA	-			P-0031082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	90	324	0	ENST00000326873.7:c.-19_2del		p.*7*	ENST00000326873	NM_000455.4	7																																																																															
KMT2B	0	MSKCC	GRCh37	19	36228079	36228079	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	102	557	0	ENST00000222270.7:c.7465A>C	p.Lys2489Gln	p.K2489Q	ENST00000222270	NM_014727.1	2489	Aag/Cag																																																																														
ERCC2	0	MSKCC	GRCh37	19	45873425	45873425	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	65	492	0	ENST00000391945.4:c.71A>T	p.Tyr24Phe	p.Y24F	ENST00000391945	NM_000400.3	24	tAc/tTc																																																																														
ALK	0	MSKCC	GRCh37	2	29940479	29940479	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	92	368	0	ENST00000389048.3:c.752A>T	p.Asp251Val	p.D251V	ENST00000389048	NM_004304.4	251	gAc/gTc																																																																														
MSH3	0	MSKCC	GRCh37	5	79950718	79950718	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs148550291		P-0031082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	14	58	1	ENST00000265081.6:c.172G>C	p.Ala58Pro	p.A58P	ENST00000265081	NM_002439.4	58	Gca/Cca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391877	139391891	+	inframe_deletion	In_Frame_Del	DEL	ATGCGCTCCTGTGCG	ATGCGCTCCTGTGCG	-			P-0031082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	188	490	0	ENST00000277541.6:c.6300_6314del	p.Ile2100_Arg2104del	p.I2100_R2104del	ENST00000277541	NM_017617.3	2100	atCGCACAGGAGCGCATg/atg																																																																														
AR	367	MSKCC	GRCh37	X	66765076	66765076	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs761416673		P-0031082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	75	519	2	ENST00000374690.3:c.88G>A	p.Val30Met	p.V30M	ENST00000374690	NM_000044.3	30	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	99	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579383	7579383	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	211	548	0	ENST00000269305.4:c.304del	p.Thr102ProfsTer21	p.T102Pfs*21	ENST00000269305	NM_001126112.2	102	Acc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0031085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	180	586	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67198878	67198878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	38	348	0	ENST00000312629.5:c.349C>T	p.Arg117Trp	p.R117W	ENST00000312629	NM_003952.2	117	Cgg/Tgg																																																																														
SOX2	0	MSKCC	GRCh37	3	181430543	181430543	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	14	219	0	ENST00000325404.1:c.395T>C	p.Leu132Pro	p.L132P	ENST00000325404	NM_003106.3	132	cTg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0031088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	384	477	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
LATS1	0	MSKCC	GRCh37	6	150004217	150004217	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	71	232	0	ENST00000253339.5:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000253339		670	Cgg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	128	305	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ALK	0	MSKCC	GRCh37	2	29416659	29416659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	102	307	0	ENST00000389048.3:c.4294C>T	p.Arg1432Trp	p.R1432W	ENST00000389048	NM_004304.4	1432	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112170865	112170865	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0031088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	151	321	0	ENST00000257430.4:c.1958+3A>T		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0027024-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			194	603	717	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
ETV6	0	MSKCC	GRCh37	12	12022465	12022465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027024-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			841	301	812	1	ENST00000396373.4:c.571C>T	p.Arg191Trp	p.R191W	ENST00000396373	NM_001987.4	191	Cgg/Tgg																																																																														
TP63	0	MSKCC	GRCh37	3	189584585	189584585	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0027024-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			588	221	454	0	ENST00000264731.3:c.881A>T	p.Gln294Leu	p.Q294L	ENST00000264731	NM_003722.4	294	cAg/cTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5229535	5229549	+	inframe_deletion	In_Frame_Del	DEL	CGGCGGCCCGCGGGC	CGGCGGCCCGCGGGC	-			P-0030941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	57	98	0	ENST00000357368.4:c.2302_2316del	p.Ala768_Pro772del	p.A768_P772del	ENST00000357368	NM_002850.3	768	GCCCGCGGGCCGCCG/-																																																																														
FBXW7	0	MSKCC	GRCh37	4	153253767	153253769	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0030956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	61	324	0	ENST00000281708.4:c.964_966del	p.Arg322del	p.R322del	ENST00000281708	NM_033632.3	322	AGA/-																																																																														
RASA1	0	MSKCC	GRCh37	5	86564620	86564636	+	frameshift_variant	Frame_Shift_Del	DEL	AAACTGCCCACTTCGTT	AAACTGCCCACTTCGTT	-			P-0030956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	136	695	0	ENST00000274376.6:c.352_368del	p.Lys118AlafsTer3	p.K118Afs*3	ENST00000274376	NM_002890.2	118	AAACTGCCCACTTCGTTg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0030958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	897	658	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
HGF	0	MSKCC	GRCh37	7	81339535	81339535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	218	394	1	ENST00000222390.5:c.1469C>T	p.Thr490Met	p.T490M	ENST00000222390	NM_000601.4	490	aCg/aTg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533650	63533650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	248	584	0	ENST00000307078.5:c.1504G>C	p.Gly502Arg	p.G502R	ENST00000307078	NM_004655.3	502	Ggc/Cgc																																																																														
CENPA	0	MSKCC	GRCh37	2	27009080	27009080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	74	209	0	ENST00000335756.4:c.16C>G	p.Arg6Gly	p.R6G	ENST00000335756	NM_001809.3	6	Cgg/Ggg																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41747916	41747916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	191	439	0	ENST00000226382.2:c.853G>T	p.Asp285Tyr	p.D285Y	ENST00000226382	NM_003924.3	285	Gat/Tat																																																																														
SOX17	0	MSKCC	GRCh37	8	55370817	55370817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	132	575	0	ENST00000297316.4:c.119G>C	p.Gly40Ala	p.G40A	ENST00000297316	NM_022454.3	40	gGg/gCg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	79	388	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	124	287	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	54	433	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
B2M	0	MSKCC	GRCh37	15	45007620	45007620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	37	223	0	ENST00000558401.1:c.68-1G>T		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	82	610	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023598	31023598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200702600		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	77	563	0	ENST00000375687.4:c.3083C>T	p.Ser1028Leu	p.S1028L	ENST00000375687	NM_015338.5	1028	tCg/tTg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	35	340	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
PLK2	0	MSKCC	GRCh37	5	57753988	57753988	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	48	303	1	ENST00000274289.3:c.636del	p.Phe212LeufsTer8	p.F212Lfs*8	ENST00000274289	NM_006622.3	212	ttT/tt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67477184	67477184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	66	385	0	ENST00000327367.4:c.991G>A	p.Val331Ile	p.V331I	ENST00000327367	NM_005902.3	331	Gtc/Atc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52678783	52678784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	54	298	0	ENST00000394830.3:c.835dupA	p.Ile279AsnfsTer8	p.I279Nfs*8	ENST00000394830	NM_018313.4	279	ata/aAta																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	89	468	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
ATRX	0	MSKCC	GRCh37	X	76938230	76938230	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	94	556	5	ENST00000373344.5:c.2518delA	p.Arg840GlufsTer29	p.R840Efs*29	ENST00000373344	NM_000489.3	840	Aga/ga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3830859	3830859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	64	477	0	ENST00000262367.5:c.1697C>T	p.Ser566Phe	p.S566F	ENST00000262367	NM_004380.2	566	tCc/tTc																																																																														
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	75	360	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																														
KDM6A	0	MSKCC	GRCh37	X	44928873	44928873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	67	377	0	ENST00000377967.4:c.1973G>A	p.Arg658Gln	p.R658Q	ENST00000377967	NM_021140.2	658	cGa/cAa																																																																														
RNF43	0	MSKCC	GRCh37	17	56438238	56438238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	109	545	0	ENST00000407977.2:c.755G>A	p.Cys252Tyr	p.C252Y	ENST00000407977		252	tGc/tAc																																																																														
AXIN1	0	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	83	536	0	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																															
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	90	545	2	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	113	719	4	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																														
FAT1	0	MSKCC	GRCh37	4	187509883	187509883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	34	305	0	ENST00000441802.2:c.13630G>A	p.Ala4544Thr	p.A4544T	ENST00000441802	NM_005245.3	4544	Gcc/Acc																																																																														
SDHAF2	0	MSKCC	GRCh37	11	61213502	61213502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	87	423	3	ENST00000301761.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000301761	NM_017841.2	154	Cgt/Tgt																																																																														
MSH3	0	MSKCC	GRCh37	5	79970915	79970916	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	117	622	0	ENST00000265081.6:c.1147_1148del	p.Lys383GlyfsTer20	p.K383Gfs*20	ENST00000265081	NM_002439.4	381	AAa/a																																																																														
DDR2	0	MSKCC	GRCh37	1	162748488	162748488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	65	311	0	ENST00000367921.3:c.2402C>T	p.Thr801Ile	p.T801I	ENST00000367921	NM_006182.2	801	aCt/aTt																																																																														
H3F3A	0	MSKCC	GRCh37	1	226253478	226253478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	48	289	1	ENST00000366813.1:c.250C>T	p.Arg84Cys	p.R84C	ENST00000366813		84	Cgc/Tgc																																																																														
FH	0	MSKCC	GRCh37	1	241680510	241680510	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	168	433	1	ENST00000366560.3:c.239A>T	p.Lys80Met	p.K80M	ENST00000366560	NM_000143.3	80	aAg/aTg																																																																														
HRAS	0	MSKCC	GRCh37	11	533578	533578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	89	601	0	ENST00000311189.7:c.325G>A	p.Val109Met	p.V109M	ENST00000311189		109	Gtg/Atg																																																																														
RB1	0	MSKCC	GRCh37	13	49039408	49039408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	106	570	1	ENST00000267163.4:c.2393G>A	p.Arg798Gln	p.R798Q	ENST00000267163	NM_000321.2	798	cGg/cAg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43713277	43713277	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200691218		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	137	734	1	ENST00000382044.4:c.4196C>T	p.Thr1399Met	p.T1399M	ENST00000382044	NM_001141980.1	1399	aCg/aTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829866	72829866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	109	633	0	ENST00000268489.5:c.6715T>C	p.Trp2239Arg	p.W2239R	ENST00000268489	NM_006885.3	2239	Tgg/Cgg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89337247	89337247	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	81	462	0	ENST00000301030.4:c.7784A>G	p.Asp2595Gly	p.D2595G	ENST00000301030	NM_001256183.1	2595	gAt/gGt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346789	89346789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	31	405	0	ENST00000301030.4:c.6161C>T	p.Ala2054Val	p.A2054V	ENST00000301030	NM_001256183.1	2054	gCt/gTt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89354986	89354986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	103	614	1	ENST00000301030.4:c.694C>A	p.Leu232Ile	p.L232I	ENST00000301030	NM_001256183.1	232	Cta/Ata																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39570501	39570501	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	36	246	0	ENST00000262039.4:c.697A>G	p.Ile233Val	p.I233V	ENST00000262039	NM_002647.2	233	Att/Gtt																																																																														
INSR	0	MSKCC	GRCh37	19	7267482	7267482	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	94	530	0	ENST00000302850.5:c.526A>G	p.Lys176Glu	p.K176E	ENST00000302850	NM_000208.2	176	Aaa/Gaa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600462	10600462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	134	617	1	ENST00000171111.5:c.1393G>A	p.Val465Met	p.V465M	ENST00000171111	NM_203500.1	465	Gtg/Atg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281176	15281176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	92	811	1	ENST00000263388.2:c.5080C>T	p.Arg1694Trp	p.R1694W	ENST00000263388	NM_000435.2	1694	Cgg/Tgg																																																																														
BRD4	0	MSKCC	GRCh37	19	15354212	15354212	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201423321		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	93	681	1	ENST00000263377.2:c.2668G>A	p.Val890Met	p.V890M	ENST00000263377	NM_058243.2	890	Gtg/Atg																																																																														
BABAM1	0	MSKCC	GRCh37	19	17384923	17384923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	86	695	0	ENST00000359435.4:c.473G>A	p.Gly158Asp	p.G158D	ENST00000359435	NM_001033549.1	158	gGc/gAc																																																																														
ACVR1	0	MSKCC	GRCh37	2	158634731	158634731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	65	346	0	ENST00000263640.3:c.455G>A	p.Arg152His	p.R152H	ENST00000263640	NM_001105.4	152	cGc/cAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187542317	187542317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	64	341	0	ENST00000441802.2:c.5423T>C	p.Val1808Ala	p.V1808A	ENST00000441802	NM_005245.3	1808	gTa/gCa																																																																														
FAT1	0	MSKCC	GRCh37	4	187628452	187628452	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	155	659	1	ENST00000441802.2:c.2530G>T	p.Val844Phe	p.V844F	ENST00000441802	NM_005245.3	844	Gtt/Ttt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149439417	149439417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	82	516	0	ENST00000286301.3:c.1978C>G	p.Leu660Val	p.L660V	ENST00000286301	NM_005211.3	660	Ctg/Gtg																																																																														
CCND3	0	MSKCC	GRCh37	6	41904993	41904993	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	79	495	0	ENST00000372991.4:c.554T>G	p.Phe185Cys	p.F185C	ENST00000372991	NM_001760.3	185	tTt/tGt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157511292	157511292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	63	431	1	ENST00000346085.5:c.3810G>A	p.Met1270Ile	p.M1270I	ENST00000346085	NM_020732.3	1270	atG/atA																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527835	157527835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	44	461	0	ENST00000346085.5:c.5560G>A	p.Gly1854Ser	p.G1854S	ENST00000346085	NM_020732.3	1854	Ggt/Agt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509082	106509082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	82	550	0	ENST00000359195.3:c.1076G>T	p.Arg359Leu	p.R359L	ENST00000359195	NM_002649.2	359	cGc/cTc																																																																														
SYK	0	MSKCC	GRCh37	9	93606184	93606184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201301123		P-0030960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	64	403	0	ENST00000375746.1:c.4G>A	p.Ala2Thr	p.A2T	ENST00000375746	NM_001174167.1	2	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	419	701	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8460504	8460504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148300682		P-0030962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	264	502	1	ENST00000356435.5:c.3782C>T	p.Thr1261Met	p.T1261M	ENST00000356435		1261	aCg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	184	669	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	227	538	1				ENST00000310581	NM_198253.2																																																																																
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1501	216	651	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
TP53	0	MSKCC	GRCh37	17	7572928	7572928	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	503	525	0	ENST00000269305.4:c.1181G>C	p.Ter394SerextTer9	p.*394Sext*9	ENST00000269305	NM_001126112.2	394	tGa/tCa																																																																														
EP300	0	MSKCC	GRCh37	22	41536229	41536229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	335	643	0	ENST00000263253.7:c.1846G>A	p.Glu616Lys	p.E616K	ENST00000263253	NM_001429.3	616	Gaa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	352	559	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120457930	120457930	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	41	382	0	ENST00000256646.2:c.7415G>T	p.Ter2472LeuextTer7	p.*2472Lext*7	ENST00000256646	NM_024408.3	2472	tGa/tTa																																																																														
NTRK1	0	MSKCC	GRCh37	1	156830734	156830734	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	68	114	0	ENST00000524377.1:c.8G>C	p.Arg3Pro	p.R3P	ENST00000524377	NM_002529.3	3	cGa/cCa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71943312	71943312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	227	656	0	ENST00000298229.2:c.1644C>A	p.Phe548Leu	p.F548L	ENST00000298229	NM_001567.3	548	ttC/ttA																																																																														
RB1	0	MSKCC	GRCh37	13	48941720	48941720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	113	370	0	ENST00000267163.4:c.1030C>A	p.Gln344Lys	p.Q344K	ENST00000267163	NM_000321.2	344	Cag/Aag																																																																														
CALR	0	MSKCC	GRCh37	19	13051240	13051240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	292	459	0	ENST00000316448.5:c.676G>A	p.Asp226Asn	p.D226N	ENST00000316448	NM_004343.3	226	Gat/Aat																																																																														
XPO1	0	MSKCC	GRCh37	2	61721073	61721073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	261	546	0	ENST00000401558.2:c.1201G>A	p.Asp401Asn	p.D401N	ENST00000401558	NM_003400.3	401	Gat/Aat																																																																														
RICTOR	0	MSKCC	GRCh37	5	38947495	38947495	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	57	321	0	ENST00000357387.3:c.4185G>C	p.Leu1395Phe	p.L1395F	ENST00000357387	NM_152756.3	1395	ttG/ttC																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652005	36652005	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	252	703	0	ENST00000244741.5:c.127C>T	p.Gln43Ter	p.Q43*	ENST00000244741	NM_000389.4	43	Cag/Tag																																																																														
HGF	0	MSKCC	GRCh37	7	81350071	81350071	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	52	432	0	ENST00000222390.5:c.1261G>C	p.Asp421His	p.D421H	ENST00000222390	NM_000601.4	421	Gac/Cac																																																																														
ATRX	0	MSKCC	GRCh37	X	76938818	76938818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	41	329	0	ENST00000373344.5:c.1930G>A	p.Val644Ile	p.V644I	ENST00000373344	NM_000489.3	644	Gtt/Att																																																																														
PLCG2	0	MSKCC	GRCh37	16	81968086	81968086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	123	563	1	ENST00000359376.3:c.2792C>A	p.Ser931Tyr	p.S931Y	ENST00000359376	NM_002661.3	931	tCt/tAt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0031040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	12	139	0	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	360	562	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435666	18435666	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	19	251	0	ENST00000266497.5:c.651G>C	p.Trp217Cys	p.W217C	ENST00000266497		217	tgG/tgC																																																																														
AR	0	MSKCC	GRCh37	X	66937409	66937409	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	147	243	0	ENST00000374690.3:c.2263T>G	p.Phe755Val	p.F755V	ENST00000374690	NM_000044.3	755	Ttc/Gtc																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	265	330	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55143660	55143660	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0031054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	187	258	0	ENST00000257290.5:c.1891+1G>T		p.X631_splice	ENST00000257290	NM_006206.4	631																																																																															
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	372	513	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0031061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	272	375	0				ENST00000310581	NM_198253.2																																																																																
PIK3C3	0	MSKCC	GRCh37	18	39575891	39575891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	192	384	0	ENST00000262039.4:c.824G>A	p.Arg275Gln	p.R275Q	ENST00000262039	NM_002647.2	275	cGg/cAg																																																																														
NF2	0	MSKCC	GRCh37	22	30070862	30070862	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0031061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	318	488	0	ENST00000338641.4:c.1378G>T	p.Glu460Ter	p.E460*	ENST00000338641	NM_000268.3	460	Gaa/Taa																																																																														
MET	0	MSKCC	GRCh37	7	116403120	116403120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	202	354	0	ENST00000397752.3:c.2381C>G	p.Ser794Cys	p.S794C	ENST00000397752	NM_000245.2	794	tCt/tGt																																																																														
APC	0	MSKCC	GRCh37	5	112176063	112176064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	48	321	0	ENST00000257430.4:c.4778dupA	p.Pro1594AlafsTer38	p.P1594Afs*38	ENST00000257430	NM_000038.5	1591	gca/gcAa																																																																														
RNF43	0	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	38	322	1	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																														
SPEN	0	MSKCC	GRCh37	1	16258163	16258163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144013241		P-0031062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	324	489	0	ENST00000375759.3:c.5428C>T	p.Pro1810Ser	p.P1810S	ENST00000375759	NM_015001.2	1810	Cca/Tca																																																																														
IRS2	0	MSKCC	GRCh37	13	110434508	110434508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	217	408	1	ENST00000375856.3:c.3893G>A	p.Gly1298Asp	p.G1298D	ENST00000375856	NM_003749.2	1298	gGc/gAc																																																																														
CD79A	0	MSKCC	GRCh37	19	42383182	42383182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	254	536	0	ENST00000221972.3:c.202C>T	p.Arg68Cys	p.R68C	ENST00000221972	NM_021601.3	68	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	48	319	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMO	0	MSKCC	GRCh37	7	128850342	128850342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	75	486	0	ENST00000249373.3:c.1605G>T	p.Trp535Cys	p.W535C	ENST00000249373	NM_005631.4	535	tgG/tgT																																																																														
KMT2A	0	MSKCC	GRCh37	11	118377019	118377019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	53	283	0	ENST00000534358.1:c.10412C>T	p.Ser3471Phe	p.S3471F	ENST00000534358	NM_005933.3	3471	tCc/tTc																																																																														
NF1	0	MSKCC	GRCh37	17	29490235	29490235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	31	279	0	ENST00000358273.4:c.320C>T	p.Thr107Met	p.T107M	ENST00000358273	NM_001042492.2	107	aCg/aTg																																																																														
BCOR	0	MSKCC	GRCh37	X	39937142	39937142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	89	506	0	ENST00000378444.4:c.41G>T	p.Trp14Leu	p.W14L	ENST00000378444	NM_001123385.1	14	tGg/tTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	349	535	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073835	8073835	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	148	287	0	ENST00000377482.5:c.824del	p.Asn275ThrfsTer20	p.N275Tfs*20	ENST00000377482	NM_018948.3	275	aAc/ac																																																																														
INHBA	0	MSKCC	GRCh37	7	41729468	41729468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	294	500	0	ENST00000242208.4:c.1061G>A	p.Cys354Tyr	p.C354Y	ENST00000242208	NM_002192.2	354	tGc/tAc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	28	324	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	101	350	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	69	248	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	168	491	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105841	27105841	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	119	398	0	ENST00000324856.7:c.5452C>T	p.Gln1818Ter	p.Q1818*	ENST00000324856	NM_006015.4	1818	Cag/Tag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	86	282	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	111	338	0	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	141	367	8	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
WT1	0	MSKCC	GRCh37	11	32456425	32456425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	141	454	0	ENST00000332351.3:c.467G>A	p.Cys156Tyr	p.C156Y	ENST00000332351	NM_024426.4	156	tGc/tAc																																																																														
CDK12	0	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	59	418	2	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																														
CDK12	0	MSKCC	GRCh37	17	37618715	37618716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	93	495	0	ENST00000447079.4:c.397dupA	p.Ser133LysfsTer24	p.S133Kfs*24	ENST00000447079	NM_015083.1	131	gaa/gAaa																																																																														
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	80	240	0	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	127	409	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
JAK1	0	MSKCC	GRCh37	1	65307280	65307283	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	91	332	0	ENST00000342505.4:c.2405_2408delAAGA	p.Lys802ArgfsTer11	p.K802Rfs*11	ENST00000342505	NM_002227.2	802	aAAGAg/ag																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310935	123310935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	108	355	1	ENST00000358487.5:c.493C>T	p.Arg165Trp	p.R165W	ENST00000358487	NM_000141.4	165	Cgg/Tgg																																																																														
NEGR1	0	MSKCC	GRCh37	1	72076785	72076785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	154	437	0	ENST00000357731.5:c.712G>A	p.Gly238Arg	p.G238R	ENST00000357731	NM_173808.2	238	Gga/Aga																																																																														
MGA	0	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	69	415	0	ENST00000219905.7:c.7306C>T	p.Arg2436Cys	p.R2436C	ENST00000219905	NM_001164273.1	2436	Cgt/Tgt																																																																														
TAP1	0	MSKCC	GRCh37	6	32815712	32815712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	144	622	0	ENST00000354258.4:c.1904G>A	p.Arg635His	p.R635H	ENST00000354258	NM_000593.5	635	cGc/cAc																																																																														
AGO2	0	MSKCC	GRCh37	8	141561430	141561430	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	97	376	0	ENST00000220592.5:c.1375delC	p.Gln459SerfsTer9	p.Q459Sfs*9	ENST00000220592	NM_012154.3	459	Cag/ag																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856208	111856208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	45	142	1	ENST00000341259.2:c.259C>T	p.Arg87Cys	p.R87C	ENST00000341259	NM_005475.2	87	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27093013	27093015	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	95	376	0	ENST00000324856.7:c.2949_2951del	p.Asn983del	p.N983del	ENST00000324856	NM_006015.4	982	AAC/-																																																																														
ELF3	0	MSKCC	GRCh37	1	201981297	201981297	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	45	575	1	ENST00000359651.3:c.376C>T	p.Arg126Ter	p.R126*	ENST00000359651		126	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89720732	89720733	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	30	127	0	ENST00000371953.3:c.884_885insTT	p.Cys296TyrfsTer12	p.C296Yfs*12	ENST00000371953	NM_000314.4	295	cta/cTTta																																																																														
RRAS2	0	MSKCC	GRCh37	11	14316075	14316075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	17	297	0	ENST00000256196.4:c.350G>A	p.Arg117His	p.R117H	ENST00000256196		117	cGt/cAt																																																																														
FLT1	0	MSKCC	GRCh37	13	28913323	28913323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	170	504	0	ENST00000282397.4:c.2470C>T	p.Arg824Trp	p.R824W	ENST00000282397	NM_002019.4	824	Cgg/Tgg																																																																														
SLX4	0	MSKCC	GRCh37	16	3632632	3632632	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	221	611	2	ENST00000294008.3:c.5216A>G	p.Glu1739Gly	p.E1739G	ENST00000294008	NM_032444.2	1739	gAg/gGg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821200	72821200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	167	550	1	ENST00000268489.5:c.10975G>T	p.Asp3659Tyr	p.D3659Y	ENST00000268489	NM_006885.3	3659	Gac/Tac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221439	36221439	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	193	639	0	ENST00000222270.7:c.5198G>A	p.Gly1733Asp	p.G1733D	ENST00000222270	NM_014727.1	1733	gGt/gAt																																																																														
INPP4A	0	MSKCC	GRCh37	2	99169298	99169299	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	138	490	0	ENST00000074304.5:c.1230_1231del	p.Arg410SerfsTer35	p.R410Sfs*35	ENST00000074304	NM_001134224.1	410	AGa/a																																																																														
INPP4A	0	MSKCC	GRCh37	2	99180093	99180093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	97	442	0	ENST00000074304.5:c.2036G>A	p.Cys679Tyr	p.C679Y	ENST00000074304	NM_001134224.1	679	tGc/tAc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99204022	99204022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	87	328	0	ENST00000074304.5:c.2885C>A	p.Pro962His	p.P962H	ENST00000074304	NM_001134224.1	962	cCc/cAc																																																																														
CTLA4	0	MSKCC	GRCh37	2	204732718	204732718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	111	335	0	ENST00000302823.3:c.53G>T	p.Arg18Met	p.R18M	ENST00000302823	NM_005214.4	18	aGg/aTg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42845342	42845343	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCCAGG			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	44	605	0	ENST00000398585.3:c.914_919dup	p.Pro305_Trp306dup	p.P305_W306dup	ENST00000398585	NM_001135099.1	305	cag/cCCTGGCag																																																																														
MLH1	0	MSKCC	GRCh37	3	37067433	37067433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	127	487	1	ENST00000231790.2:c.1348del	p.Asp450IlefsTer41	p.D450Ifs*41	ENST00000231790	NM_000249.3	448	gaG/ga																																																																														
PBRM1	0	MSKCC	GRCh37	3	52696245	52696245	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	149	469	0	ENST00000394830.3:c.432C>G	p.Tyr144Ter	p.Y144*	ENST00000394830	NM_018313.4	144	taC/taG																																																																														
SOX2	0	MSKCC	GRCh37	3	181430536	181430536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	85	233	0	ENST00000325404.1:c.388G>A	p.Gly130Arg	p.G130R	ENST00000325404	NM_003106.3	130	Ggg/Agg																																																																														
NSD1	0	MSKCC	GRCh37	5	176638068	176638072	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTC	TTCTC	-			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	100	524	0	ENST00000439151.2:c.2672_2676del	p.Ser891CysfsTer3	p.S891Cfs*3	ENST00000439151	NM_022455.4	890	TTCTCt/t																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138197298	138197298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	44	176	1	ENST00000237289.4:c.800G>A	p.Gly267Glu	p.G267E	ENST00000237289	NM_001270507.1	267	gGg/gAg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527703	157527703	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	162	479	0	ENST00000346085.5:c.5428C>T	p.Gln1810Ter	p.Q1810*	ENST00000346085	NM_020732.3	1810	Cag/Tag																																																																														
ETV1	0	MSKCC	GRCh37	7	13935520	13935520	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	75	263	0	ENST00000405192.2:c.1336del	p.His446ThrfsTer47	p.H446Tfs*47	ENST00000405192	NM_001163147.1	446	Cac/ac																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128246785	128246785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	161	605	2	ENST00000265960.3:c.1144C>T	p.His382Tyr	p.H382Y	ENST00000265960	NM_001006617.1	382	Cat/Tat																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413907	139413907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	53	526	0	ENST00000277541.6:c.853C>T	p.Pro285Ser	p.P285S	ENST00000277541	NM_017617.3	285	Cca/Tca																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841247	15841247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	66	174	0	ENST00000307771.7:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000307771	NM_005089.3	444	cGg/cAg																																																																														
ARAF	0	MSKCC	GRCh37	X	47424212	47424212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	142	505	0	ENST00000377045.4:c.217G>A	p.Ala73Thr	p.A73T	ENST00000377045	NM_001654.4	73	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0031096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	62	370	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	73	496	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
ERCC4	0	MSKCC	GRCh37	16	14014039	14014039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	51	356	0	ENST00000311895.7:c.17C>T	p.Pro6Leu	p.P6L	ENST00000311895	NM_005236.2	6	cCg/cTg																																																																														
ROS1	0	MSKCC	GRCh37	6	117662703	117662703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	72	347	0	ENST00000368508.3:c.4762A>G	p.Lys1588Glu	p.K1588E	ENST00000368508	NM_002944.2	1588	Aaa/Gaa																																																																														
BTK	0	MSKCC	GRCh37	X	100608978	100608978	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0031096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	59	360	0	ENST00000308731.7:c.1632-2A>T		p.X544_splice	ENST00000308731	NM_000061.2	544																																																																															
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	251	574	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
PTEN	0	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	182	422	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	109	326	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa																																																																														
ATR	0	MSKCC	GRCh37	3	142259767	142259767	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	69	405	0	ENST00000350721.4:c.3560A>G	p.Asp1187Gly	p.D1187G	ENST00000350721	NM_001184.3	1187	gAt/gGt																																																																														
NEGR1	0	MSKCC	GRCh37	1	72076731	72076731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	216	457	3	ENST00000357731.5:c.766G>C	p.Glu256Gln	p.E256Q	ENST00000357731	NM_173808.2	256	Gaa/Caa																																																																														
CDC73	0	MSKCC	GRCh37	1	193202178	193202178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	143	330	0	ENST00000367435.3:c.1210C>G	p.Leu404Val	p.L404V	ENST00000367435	NM_024529.4	404	Cta/Gta																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425119	49425119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	204	626	0	ENST00000301067.7:c.13369G>T	p.Glu4457Ter	p.E4457*	ENST00000301067	NM_003482.3	4457	Gaa/Taa																																																																														
FLT3	0	MSKCC	GRCh37	13	28622494	28622494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	175	498	2	ENST00000241453.7:c.1123G>A	p.Ala375Thr	p.A375T	ENST00000241453	NM_004119.2	375	Gcc/Acc																																																																														
RB1	0	MSKCC	GRCh37	13	49050979	49050979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	129	283	1	ENST00000267163.4:c.2663G>A	p.Ser888Asn	p.S888N	ENST00000267163	NM_000321.2	888	aGt/aAt																																																																														
PRKD1	0	MSKCC	GRCh37	14	30108097	30108097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	92	471	0	ENST00000331968.5:c.710C>T	p.Ser237Leu	p.S237L	ENST00000331968	NM_002742.2	237	tCa/tTa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554161	63554161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	196	559	0	ENST00000307078.5:c.578C>T	p.Ser193Phe	p.S193F	ENST00000307078	NM_004655.3	193	tCt/tTt																																																																														
PRKCI	0	MSKCC	GRCh37	3	169977831	169977831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	119	457	0	ENST00000295797.4:c.298G>C	p.Glu100Gln	p.E100Q	ENST00000295797	NM_002740.5	100	Gaa/Caa																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186505322	186505322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	242	319	0	ENST00000323963.5:c.948G>A	p.Met316Ile	p.M316I	ENST00000323963		316	atG/atA																																																																														
INPP4B	0	MSKCC	GRCh37	4	143067107	143067107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	131	322	0	ENST00000262992.4:c.1606A>T	p.Ile536Phe	p.I536F	ENST00000262992	NM_001101669.1	536	Att/Ttt																																																																														
HLA-A	0	MSKCC	GRCh37	6	29912386	29912420	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCTCAGGTGGAGAAGGGGTGAAGGGTGGGGTCT	GAGCTCAGGTGGAGAAGGGGTGAAGGGTGGGGTCT	-			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	296	417	0	ENST00000376809.5:c.1008_1012+30del		p.X336_splice	ENST00000376809	NM_002116.7	336																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32166449	32166449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	442	579	2	ENST00000375023.3:c.4594G>C	p.Glu1532Gln	p.E1532Q	ENST00000375023	NM_004557.3	1532	Gag/Cag																																																																														
SMO	0	MSKCC	GRCh37	7	128852035	128852035	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	274	654	0	ENST00000249373.3:c.2107C>T	p.Arg703Ter	p.R703*	ENST00000249373	NM_005631.4	703	Cga/Tga																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209270	98209270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	158	554	0	ENST00000331920.6:c.4268G>A	p.Arg1423Lys	p.R1423K	ENST00000331920	NM_000264.3	1423	aGg/aAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0000122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	473	835	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
HNF1A	0	MSKCC	GRCh37	12	121437341	121437341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	99	825	0	ENST00000257555.6:c.1679C>T	p.Ser560Phe	p.S560F	ENST00000257555		560	tCt/tTt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81925083	81925083	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			156	337	605	0	ENST00000359376.3:c.874A>T	p.Thr292Ser	p.T292S	ENST00000359376	NM_002661.3	292	Acg/Tcg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62316910	62316926	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGTTCCCCAGCAGGG	CTGGTTCCCCAGCAGGG	-			P-0000122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	348	778	0	ENST00000508582.2:c.1302_1318del	p.Ser435GlyfsTer6	p.S435Gfs*6	ENST00000508582		433	cCTGGTTCCCCAGCAGGG/c																																																																														
MED12	0	MSKCC	GRCh37	X	70343003	70343008	+	frameshift_variant	Frame_Shift_Ins	INS	AGCGTT	AGCGTT	TTCACAG			P-0000122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	378	746	1	ENST00000374080.3:c.1544_1549delinsTTCACAG	p.Lys515IlefsTer23	p.K515Ifs*23	ENST00000374080		515	aAGCGTTct/aTTCACAGct																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462860	120462860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017174-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			373	23	282	1	ENST00000256646.2:c.5471G>A	p.Arg1824His	p.R1824H	ENST00000256646	NM_024408.3	1824	cGt/cAt																																																																														
DIS3	0	MSKCC	GRCh37	13	73355087	73355087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017174-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			713	73	600	0	ENST00000377767.4:c.283C>G	p.Leu95Val	p.L95V	ENST00000377767	NM_014953.3	95	Ctt/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0017174-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			935	117	632	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30956886	30956889	+	frameshift_variant	Frame_Shift_Del	DEL	TTTA	TTTA	-			P-0017174-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			755	127	530	0	ENST00000375687.4:c.213_216del	p.Phe71LeufsTer48	p.F71Lfs*48	ENST00000375687	NM_015338.5	71	tTTTAt/tt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0017174-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			729	2471	548	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017174-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			3390	612	728	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017174-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			3635	597	749	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873297	151873297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017174-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			466	30	344	0	ENST00000262189.6:c.9241G>C	p.Glu3081Gln	p.E3081Q	ENST00000262189	NM_170606.2	3081	Gaa/Caa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47032579	47032579	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017174-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			405	449	335	0	ENST00000329236.7:c.254del	p.Met85SerfsTer104	p.M85Sfs*104	ENST00000329236	NM_001204466.1	85	aTg/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	103	478	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	129	599	1	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
CUL3	0	MSKCC	GRCh37	2	225371691	225371691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	147	609	1	ENST00000264414.4:c.913C>T	p.Arg305Cys	p.R305C	ENST00000264414	NM_003590.4	305	Cgt/Tgt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111688	56112072	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGACGCAGCGGGGAGTGGGACCGGCTTCCAGCCTGTGGCGGTGCCGCCGCCCCACGGAGCCGCGAGCCGCGGCGGCGCCCACCTTACCGAGTCGGTGGCGGCGCCGGACAGCGGCGCCTCGAGTCCCGCAGCGGCCGAGCCCGGGGAGAAGCGGGCGCCCGCCGCCGAGCCGTCTCCTGCAGCGGCCCCCGCCGGGTGAGCAGCACGGCCGGGGTCGCGGCGGGGACTTGGAGAGCGGGCAGAGGGCAATGAATGAACCCCGGGCACCATGCACGGCGTCCCGGGGTTCAGCGCAGCGAGGCTACGCGCCGCTCGCCGGGACCTACGCCCCTGAGCACCCCCCGACCCCTTCGGAGTCGGGCGGCGCCCCGGACCCAGCCTGGGG	GGACGCAGCGGGGAGTGGGACCGGCTTCCAGCCTGTGGCGGTGCCGCCGCCCCACGGAGCCGCGAGCCGCGGCGGCGCCCACCTTACCGAGTCGGTGGCGGCGCCGGACAGCGGCGCCTCGAGTCCCGCAGCGGCCGAGCCCGGGGAGAAGCGGGCGCCCGCCGCCGAGCCGTCTCCTGCAGCGGCCCCCGCCGGGTGAGCAGCACGGCCGGGGTCGCGGCGGGGACTTGGAGAGCGGGCAGAGGGCAATGAATGAACCCCGGGCACCATGCACGGCGTCCCGGGGTTCAGCGCAGCGAGGCTACGCGCCGCTCGCCGGGACCTACGCCCCTGAGCACCCCCCGACCCCTTCGGAGTCGGGCGGCGCCCCGGACCCAGCCTGGGG	-			P-0030787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	84	251	0	ENST00000399503.3:c.289_482+191del		p.X97_splice	ENST00000399503	NM_005921.1	97																																																																															
KMT2C	0	MSKCC	GRCh37	7	152008973	152008997	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCTGTCTGGGTGCTTACACTTAC	AAGCTGTCTGGGTGCTTACACTTAC	-			P-0030787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	81	447	0	ENST00000262189.6:c.625_649del	p.Val209GlnfsTer44	p.V209Qfs*44	ENST00000262189	NM_170606.2	209	GTAAGTGTAAGCACCCAGACAGCTTca/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	88	755	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175525	112175525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	49	436	1	ENST00000257430.4:c.4234G>T	p.Gly1412Ter	p.G1412*	ENST00000257430	NM_000038.5	1412	Gga/Tga																																																																														
ALK	0	MSKCC	GRCh37	2	29420420	29420420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	55	656	0	ENST00000389048.3:c.4061G>A	p.Cys1354Tyr	p.C1354Y	ENST00000389048	NM_004304.4	1354	tGc/tAc																																																																														
APC	0	MSKCC	GRCh37	5	112128198	112128199	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0030909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	86	645	0	ENST00000257430.4:c.703_704del	p.Leu235ThrfsTer16	p.L235Tfs*16	ENST00000257430	NM_000038.5	234	cTT/c																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737702	145737728	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCACACCTGCCGGAAAGCATGTCAGAT	GCACACCTGCCGGAAAGCATGTCAGAT	-			P-0030909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	85	713	0	ENST00000428558.2:c.3056-21_3061del		p.X1019_splice	ENST00000428558	NM_004260.3	1019																																																																															
KMT2C	0	MSKCC	GRCh37	7	151902306	151902307	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	T			P-0030909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	28	247	0	ENST00000262189.6:c.3845_3846delinsA	p.Ile1282LysfsTer21	p.I1282Kfs*21	ENST00000262189	NM_170606.2	1282	aTT/aA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0030932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	389	629	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0030932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	309	727	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
IGF2	0	MSKCC	GRCh37	11	2161479	2161479	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	89	653	0	ENST00000434045.2:c.48A>T	p.Glu16Asp	p.E16D	ENST00000434045	NM_001127598.1	16	gaA/gaT																																																																														
SETD2	0	MSKCC	GRCh37	3	47165832	47165832	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	92	669	0	ENST00000409792.3:c.294T>A	p.Ser98Arg	p.S98R	ENST00000409792	NM_014159.6	98	agT/agA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0030957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	130	491	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	307	488	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	330	613	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	61	154	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	151	233	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	254	467	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	208	637	5	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
ARID5B	0	MSKCC	GRCh37	10	63845553	63845553	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	138	420	0	ENST00000279873.7:c.1295del	p.Asn432MetfsTer47	p.N432Mfs*47	ENST00000279873	NM_032199.2	431	gAa/ga																																																																														
ERBB2	0	MSKCC	GRCh37	17	37884218	37884218	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	69	569	2	ENST00000269571.5:c.3694delG	p.Ala1232LeufsTer70	p.A1232Lfs*70	ENST00000269571		1230	cGg/cg																																																																														
ACVR1	0	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	208	261	0	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	177	460	1	ENST00000318789.4:c.1240delC	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	498235	498235	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	27	234	0	ENST00000399788.2:c.23del	p.Gly8AlafsTer58	p.G8Afs*58	ENST00000399788	NM_001042603.1	8	gGc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	214	568	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	246	610	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1358	83	739	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221756	36221756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	238	678	1	ENST00000222270.7:c.5425G>A	p.Ala1809Thr	p.A1809T	ENST00000222270	NM_014727.1	1809	Gcc/Acc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	171	734	4	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830778	72830778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	174	483	3	ENST00000268489.5:c.5803C>T	p.Arg1935Cys	p.R1935C	ENST00000268489	NM_006885.3	1935	Cgc/Tgc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874836	151874836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	170	242	0	ENST00000262189.6:c.7702G>A	p.Gly2568Arg	p.G2568R	ENST00000262189	NM_170606.2	2568	Gga/Aga																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120457941	120457941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	109	350	0	ENST00000256646.2:c.7404G>T	p.Gln2468His	p.Q2468H	ENST00000256646	NM_024408.3	2468	caG/caT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023437	27023455	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAGCGCTGCAGAGCGGC	GGCAGCGCTGCAGAGCGGC	-			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	369	549	0	ENST00000324856.7:c.546_564del	p.Leu184GlyfsTer42	p.L184Gfs*42	ENST00000324856	NM_006015.4	181	ctGGCAGCGCTGCAGAGCGGC/ct																																																																														
ELF3	0	MSKCC	GRCh37	1	201984430	201984430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	56	550	0	ENST00000359651.3:c.1095G>T	p.Glu365Asp	p.E365D	ENST00000359651		365	gaG/gaT																																																																														
PTEN	0	MSKCC	GRCh37	10	89720771	89720772	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGCAGATAATGACAAGGAATATCTA			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	68	171	0	ENST00000371953.3:c.925_950dup	p.Leu318GlnfsTer8	p.L318Qfs*8	ENST00000371953	NM_000314.4	308	cgt/cGTGCAGATAATGACAAGGAATATCTAgt																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724619	112724619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	295	409	0	ENST00000369452.4:c.503T>C	p.Leu168Ser	p.L168S	ENST00000369452	NM_007373.3	168	tTg/tCg																																																																														
PGR	0	MSKCC	GRCh37	11	100999121	100999122	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	237	577	0	ENST00000325455.5:c.680_681del	p.Ser227Ter	p.S227*	ENST00000325455	NM_001202474.3	227	tCT/t																																																																														
KDM5A	0	MSKCC	GRCh37	12	463270	463270	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	51	499	0	ENST00000399788.2:c.1001A>C	p.Asp334Ala	p.D334A	ENST00000399788	NM_001042603.1	334	gAc/gCc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32929185	32929185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	235	550	0	ENST00000380152.3:c.7195A>G	p.Thr2399Ala	p.T2399A	ENST00000380152		2399	Aca/Gca																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36989283	36989283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	196	491	0	ENST00000354822.5:c.52G>A	p.Gly18Arg	p.G18R	ENST00000354822	NM_001079668.2	18	Ggg/Agg																																																																														
TSHR	0	MSKCC	GRCh37	14	81609518	81609518	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	104	387	0	ENST00000298171.2:c.1120del	p.Gln374ArgfsTer38	p.Q374Rfs*38	ENST00000298171	NM_000369.2	372	aaC/aa																																																																														
AXIN1	0	MSKCC	GRCh37	16	354328	354328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	113	483	0	ENST00000262320.3:c.1230G>T	p.Glu410Asp	p.E410D	ENST00000262320	NM_003502.3	410	gaG/gaT																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992651	72992651	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	49	332	0	ENST00000268489.5:c.1394A>C	p.Glu465Ala	p.E465A	ENST00000268489	NM_006885.3	465	gAg/gCg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81922853	81922853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	216	444	0	ENST00000359376.3:c.842C>T	p.Ala281Val	p.A281V	ENST00000359376	NM_002661.3	281	gCt/gTt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52722997	52722998	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	219	515	1	ENST00000322088.6:c.1182_1183delinsAT	p.Ile395Phe	p.I395F	ENST00000322088	NM_014225.5	394	gtGAtt/gtATtt																																																																														
PAK7	0	MSKCC	GRCh37	20	9561223	9561223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	167	356	0	ENST00000353224.5:c.559C>A	p.Pro187Thr	p.P187T	ENST00000353224	NM_177990.2	187	Cct/Act																																																																														
SRC	0	MSKCC	GRCh37	20	36031668	36031668	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	86	566	0	ENST00000358208.4:c.1497C>A	p.Cys499Ter	p.C499*	ENST00000358208		499	tgC/tgA																																																																														
TOP1	0	MSKCC	GRCh37	20	39728733	39728733	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	160	388	0	ENST00000361337.2:c.1013A>G	p.Tyr338Cys	p.Y338C	ENST00000361337	NM_003286.2	338	tAt/tGt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730774	40730774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	114	447	0	ENST00000373198.4:c.3761C>T	p.Ala1254Val	p.A1254V	ENST00000373198	NM_133170.3	1254	gCa/gTa																																																																														
FAM175A	0	MSKCC	GRCh37	4	84383998	84383998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	198	488	0	ENST00000321945.7:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000321945	NM_139076.2	285	cGg/cAg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31424570	31424571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	126	674	0	ENST00000344624.3:c.3224dup	p.Glu1076ArgfsTer19	p.E1076Rfs*19	ENST00000344624		1075	cgc/cgGc																																																																														
MET	0	MSKCC	GRCh37	7	116371869	116371869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	45	392	0	ENST00000397752.3:c.1348C>A	p.Leu450Ile	p.L450I	ENST00000397752	NM_000245.2	450	Ctc/Atc																																																																														
SMO	0	MSKCC	GRCh37	7	128852149	128852149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1306	82	766	0	ENST00000249373.3:c.2221C>A	p.Pro741Thr	p.P741T	ENST00000249373	NM_005631.4	741	Ccc/Acc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38135865	38135865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	114	485	1	ENST00000317025.8:c.3826G>A	p.Gly1276Arg	p.G1276R	ENST00000317025	NM_023034.1	1276	Gga/Aga																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981896	70981896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	77	612	0	ENST00000276594.2:c.200C>A	p.Pro67His	p.P67H	ENST00000276594	NM_024504.3	67	cCc/cAc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44732907	44732907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	301	464	2	ENST00000377967.4:c.110C>T	p.Ala37Val	p.A37V	ENST00000377967	NM_021140.2	37	gCg/gTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412944	63412944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	256	698	0	ENST00000330258.3:c.223G>A	p.Gly75Arg	p.G75R	ENST00000330258	NM_152424.3	75	Ggg/Agg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	117	433	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0031043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	129	351	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0031043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	101	458	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0031043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	89	253	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
SESN1	0	MSKCC	GRCh37	6	109311998	109311998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	195	574	0	ENST00000436639.2:c.1274G>A	p.Arg425His	p.R425H	ENST00000436639	NM_014454.2	425	cGc/cAc																																																																														
RXRA	0	MSKCC	GRCh37	9	137300899	137300899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	144	634	2	ENST00000481739.1:c.544C>T	p.Arg182Trp	p.R182W	ENST00000481739	NM_002957.4	182	Cgg/Tgg																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73046207	73046207	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	84	507	0	ENST00000356692.5:c.19C>T	p.Gln7Ter	p.Q7*	ENST00000356692		7	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0031051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	131	616	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	98	362	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RNF43	0	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0031051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	181	596	5	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	239	438	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	294	568	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PREX2	0	MSKCC	GRCh37	8	68864700	68864700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	103	402	1	ENST00000288368.4:c.71G>A	p.Arg24His	p.R24H	ENST00000288368	NM_024870.2	24	cGc/cAc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71947005	71947023	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGGGAGGAGCCCTTGA	CCCCGGGAGGAGCCCTTGA	-			P-0031056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	59	720	0	ENST00000298229.2:c.2858_2876del	p.Arg953ProfsTer3	p.R953Pfs*3	ENST00000298229	NM_001567.3	952	CCCCGGGAGGAGCCCTTGAcc/cc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15943759	15943759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0031056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	123	343	0	ENST00000268712.3:c.6729del	p.Ser2244GlnfsTer49	p.S2244Qfs*49	ENST00000268712	NM_006311.3	2243	acG/ac																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573591	48573610	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGCTATAACTACAAATGG	ACAGCTATAACTACAAATGG	-			P-0031056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	53	325	0	ENST00000342988.3:c.176_195del	p.Thr59SerfsTer4	p.T59Sfs*4	ENST00000342988	NM_005359.5	59	ACAGCTATAACTACAAATGGa/a																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485280	8485280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0031056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	74	508	0	ENST00000356435.5:c.3100G>T	p.Val1034Leu	p.V1034L	ENST00000356435		1034	Gtg/Ttg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	181	377	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	67	284	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	330	558	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112174388	112174388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	19	223	0	ENST00000257430.4:c.3097G>A	p.Asp1033Asn	p.D1033N	ENST00000257430	NM_000038.5	1033	Gat/Aat																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89341317	89341317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	52	209	0	ENST00000301030.4:c.7618C>T	p.Arg2540Trp	p.R2540W	ENST00000301030	NM_001256183.1	2540	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175890	112175890	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	23	200	0	ENST00000257430.4:c.4599del	p.Asn1533LysfsTer32	p.N1533Kfs*32	ENST00000257430	NM_000038.5	1533	aaT/aa																																																																														
CARD11	0	MSKCC	GRCh37	7	2966384	2966384	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0031058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	151	538	0	ENST00000396946.4:c.1796T>C	p.Leu599Ser	p.L599S	ENST00000396946	NM_032415.4	599	tTa/tCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0031060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	47	384	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0031060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	59	514	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	104	426	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0031060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	349	682	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																														
NTRK3	0	MSKCC	GRCh37	15	88690624	88690624	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0031060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	86	394	0	ENST00000360948.2:c.406A>G	p.Ser136Gly	p.S136G	ENST00000360948	NM_001012338.2	136	Agt/Ggt																																																																														
TRAF7	0	MSKCC	GRCh37	16	2223397	2223399	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TTT	TTT	-			P-0031060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	121	505	0	ENST00000326181.6:c.1009_1011del	p.Phe337del	p.F337del	ENST00000326181	NM_032271.2	337	TTT/-																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665125	138665125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0031060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	45	418	1	ENST00000330315.3:c.440G>A	p.Arg147His	p.R147H	ENST00000330315	NM_023067.3	147	cGc/cAc																																																																														
MED12	0	MSKCC	GRCh37	X	70339251	70339252	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGG			P-0031060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	167	255	0	ENST00000374080.3:c.129_131dup	p.Gly44dup	p.G44dup	ENST00000374080		44	caa/caAGGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	125	245	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0030906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	150	512	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0030906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	253	617	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
ATM	0	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	264	624	0	ENST00000278616.4:c.8631G>C	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttC																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426751	49426751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	118	335	0	ENST00000301067.7:c.11737C>T	p.Gln3913Ter	p.Q3913*	ENST00000301067	NM_003482.3	3913	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445170	49445170	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	337	821	0	ENST00000301067.7:c.2296G>T	p.Glu766Ter	p.E766*	ENST00000301067	NM_003482.3	766	Gag/Tag																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439578	51439578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	243	467	0	ENST00000262662.1:c.143G>T	p.Gly48Val	p.G48V	ENST00000262662		48	gGa/gTa																																																																														
SUZ12	0	MSKCC	GRCh37	17	30321655	30321655	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	323	739	1	ENST00000322652.5:c.1510C>T	p.Gln504Ter	p.Q504*	ENST00000322652	NM_015355.2	504	Cag/Tag																																																																														
SUZ12	0	MSKCC	GRCh37	17	30322609	30322609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	300	656	0	ENST00000322652.5:c.1622C>T	p.Ser541Phe	p.S541F	ENST00000322652	NM_015355.2	541	tCt/tTt																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091759	29091759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	218	462	1	ENST00000328354.6:c.1198G>A	p.Gly400Arg	p.G400R	ENST00000328354	NM_007194.3	400	Ggg/Agg																																																																														
RHEB	0	MSKCC	GRCh37	7	151188035	151188035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	189	527	0	ENST00000262187.5:c.118G>C	p.Glu40Gln	p.E40Q	ENST00000262187	NM_005614.3	40	Gaa/Caa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151866270	151866270	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	314	578	0	ENST00000262189.6:c.9517+1G>T		p.X3173_splice	ENST00000262189	NM_170606.2	3173																																																																															
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	320	701	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
CUL3	0	MSKCC	GRCh37	2	225339072	225339072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	108	483	1	ENST00000264414.4:c.2197C>T	p.Arg733Ter	p.R733*	ENST00000264414	NM_003590.4	733	Cga/Tga																																																																														
EGFR	0	MSKCC	GRCh37	7	55249012	55249013	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0030934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	522	600	0	ENST00000275493.2:c.2310_2311insGGG	p.Asp770_Asn771insGly	p.D770_N771insG	ENST00000275493	NM_005228.3	770	-/GGG																																																																														
FGF3	0	MSKCC	GRCh37	11	69625398	69625398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2375	129	741	4	ENST00000334134.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000334134	NM_005247.2	132	cGg/cAg																																																																														
PAK1	0	MSKCC	GRCh37	11	77066842	77066842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	121	460	0	ENST00000356341.3:c.643C>T	p.Arg215Trp	p.R215W	ENST00000356341	NM_002576.4	215	Cgg/Tgg																																																																														
KDM5A	0	MSKCC	GRCh37	12	430224	430224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	125	535	0	ENST00000399788.2:c.2478G>C	p.Leu826Phe	p.L826F	ENST00000399788	NM_001042603.1	826	ttG/ttC																																																																														
DOT1L	0	MSKCC	GRCh37	19	2214534	2214536	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0030934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	155	720	0	ENST00000398665.3:c.1864_1866del	p.Glu622del	p.E622del	ENST00000398665	NM_032482.2	621	aAGGag/aag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89462416	89462431	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAACCACAATGACC	GGTAACCACAATGACC	-			P-0030934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	110	645	0	ENST00000336596.2:c.1888_1888+15del		p.X630_splice	ENST00000336596	NM_005233.5	630																																																																															
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0030935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	162	846	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
TERT	0	MSKCC	GRCh37	5	1293449	1293449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	23	628	2	ENST00000310581.5:c.1552G>A	p.Ala518Thr	p.A518T	ENST00000310581	NM_198253.2	518	Gct/Act																																																																														
DDR2	0	MSKCC	GRCh37	1	162746132	162746132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	27	380	0	ENST00000367921.3:c.2255G>A	p.Arg752His	p.R752H	ENST00000367921	NM_006182.2	752	cGc/cAc																																																																														
LATS2	0	MSKCC	GRCh37	13	21565467	21565467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	43	756	0	ENST00000382592.4:c.419G>C	p.Gly140Ala	p.G140A	ENST00000382592	NM_014572.2	140	gGc/gCc																																																																														
BLM	0	MSKCC	GRCh37	15	91347505	91347505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	62	727	0	ENST00000355112.3:c.3667A>G	p.Thr1223Ala	p.T1223A	ENST00000355112	NM_000057.2	1223	Aca/Gca																																																																														
BRD4	0	MSKCC	GRCh37	19	15350623	15350623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	36	799	0	ENST00000263377.2:c.3292G>A	p.Ala1098Thr	p.A1098T	ENST00000263377	NM_058243.2	1098	Gct/Act																																																																														
IRS1	0	MSKCC	GRCh37	2	227661797	227661797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	21	743	0	ENST00000305123.5:c.1658A>T	p.Glu553Val	p.E553V	ENST00000305123	NM_005544.2	553	gAg/gTg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31437406	31437406	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0030935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	46	678	0	ENST00000344624.3:c.2883-1G>T		p.X961_splice	ENST00000344624		961																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	49	324	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	112	689	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
HGF	3082	MSKCC	GRCh37	7	81381541	81381541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	76	404	0	ENST00000222390.5:c.520G>A	p.Glu174Lys	p.E174K	ENST00000222390	NM_000601.4	174	Gaa/Aaa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735503	40735503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	101	584	2	ENST00000373198.4:c.3370G>A	p.Glu1124Lys	p.E1124K	ENST00000373198	NM_133170.3	1124	Gag/Aag																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727443	66727443	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	82	513	0	ENST00000307102.5:c.159T>A	p.Phe53Leu	p.F53L	ENST00000307102	NM_002755.3	53	ttT/ttA																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274121	10274121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	67	599	0	ENST00000330684.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000330684	NM_001134407.1	50	Gaa/Aaa																																																																														
TET2	0	MSKCC	GRCh37	4	106193889	106193889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	80	472	0	ENST00000380013.4:c.4351C>T	p.Arg1451Trp	p.R1451W	ENST00000380013	NM_001127208.2	1451	Cgg/Tgg																																																																														
SETD2	0	MSKCC	GRCh37	3	47158134	47158134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	127	681	0	ENST00000409792.3:c.4565A>G	p.Asn1522Ser	p.N1522S	ENST00000409792	NM_014159.6	1522	aAt/aGt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499814	8499814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	100	570	0	ENST00000356435.5:c.2155G>A	p.Glu719Lys	p.E719K	ENST00000356435		719	Gag/Aag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913449	32913449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	126	743	0	ENST00000380152.3:c.4957A>G	p.Thr1653Ala	p.T1653A	ENST00000380152		1653	Act/Gct																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986887	36986887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	63	334	0	ENST00000354822.5:c.802G>A	p.Gly268Ser	p.G268S	ENST00000354822	NM_001079668.2	268	Ggc/Agc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211154	36211154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	148	983	1	ENST00000222270.7:c.905C>A	p.Pro302His	p.P302H	ENST00000222270	NM_014727.1	302	cCc/cAc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36227887	36227887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	91	779	1	ENST00000222270.7:c.7372G>A	p.Gly2458Arg	p.G2458R	ENST00000222270	NM_014727.1	2458	Gga/Aga																																																																														
SOS1	0	MSKCC	GRCh37	2	39233650	39233650	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	100	597	0	ENST00000402219.2:c.2694del	p.Ile900PhefsTer2	p.I900Ffs*2	ENST00000402219	NM_005633.3	898	aaG/aa																																																																														
PAK7	0	MSKCC	GRCh37	20	9624937	9624937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	84	433	0	ENST00000353224.5:c.40C>T	p.Pro14Ser	p.P14S	ENST00000353224	NM_177990.2	14	Ccg/Tcg																																																																														
EP300	0	MSKCC	GRCh37	22	41513494	41513494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	117	674	0	ENST00000263253.7:c.398C>A	p.Ser133Tyr	p.S133Y	ENST00000263253	NM_001429.3	133	tCt/tAt																																																																														
ROS1	0	MSKCC	GRCh37	6	117725555	117725555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	117	615	0	ENST00000368508.3:c.326C>T	p.Ser109Phe	p.S109F	ENST00000368508	NM_002944.2	109	tCc/tTc																																																																														
PREX2	0	MSKCC	GRCh37	8	69032449	69032449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	137	738	0	ENST00000288368.4:c.3523C>T	p.Leu1175Phe	p.L1175F	ENST00000288368	NM_024870.2	1175	Ctc/Ttc																																																																														
MLL2	0	MSKCC	GRCh37	12	49431021	49431021	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	190	514	0	ENST00000301067.7:c.10118C>A	p.Ser3373Ter	p.S3373*	ENST00000301067	NM_003482.3	3373	tCa/tAa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44896901	44896904	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCAA	TCAA	-			P-0000202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			144	700	472	0	ENST00000377967.4:c.622_625delCAAT	p.Gln208PhefsTer33	p.Q208Ffs*33	ENST00000377967	NM_021140.2	207	atTCAA/at																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139397700	139397700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000374-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	147	227	0	ENST00000277541.6:c.5101G>C	p.Ala1701Pro	p.A1701P	ENST00000277541	NM_017617.3	1701	Gca/Cca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390864	139390876	+	frameshift_variant	Frame_Shift_Del	DEL	CGTCTGCCTGGCT	CGTCTGCCTGGCT	-			P-0000374-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	93	257	0	ENST00000277541.6:c.7315_7327delAGCCAGGCAGACG	p.Ser2439CysfsTer34	p.S2439Cfs*34	ENST00000277541	NM_017617.3	2439	AGCCAGGCAGACGtg/tg																																																																														
SETD2	0	MSKCC	GRCh37	3	47098895	47098895	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000434-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	141	208	0	ENST00000409792.3:c.6379C>T	p.Gln2127Ter	p.Q2127*	ENST00000409792	NM_014159.6	2127	Caa/Taa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807513	1807513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000434-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	121	302	0	ENST00000260795.2:c.1682G>C	p.Gly561Ala	p.G561A	ENST00000260795		561	gGt/gCt																																																																														
MAX	0	MSKCC	GRCh37	14	65544630	65544630	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0000434-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	152	227	0	ENST00000358664.4:c.295+1G>A		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																															
RARA	0	MSKCC	GRCh37	17	38508643	38508643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000434-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	179	241	0	ENST00000254066.5:c.691C>G	p.Leu231Val	p.L231V	ENST00000254066	NM_000964.3	231	Ctc/Gtc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259228	36259229	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000434-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	277	159	0	ENST00000300305.3:c.262dupG	p.Glu88GlyfsTer50	p.E88Gfs*50	ENST00000300305		88	gag/gGag																																																																														
MYCN	0	MSKCC	GRCh37	2	16086160	16086160	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	193	294	0	ENST00000281043.3:c.1336A>G	p.Lys446Glu	p.K446E	ENST00000281043	NM_005378.4	446	Aaa/Gaa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71008502	71008502	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1086	141	537	0	ENST00000318789.4:c.1930G>T	p.Glu644Ter	p.E644*	ENST00000318789	NM_032682.5	644	Gaa/Taa																																																																														
RASA1	0	MSKCC	GRCh37	5	86685310	86685310	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	57	225	0	ENST00000274376.6:c.3026T>G	p.Leu1009Arg	p.L1009R	ENST00000274376	NM_002890.2	1009	cTt/cGt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589159	67589160	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TATT			P-0000507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1323	101	435	0	ENST00000274335.5:c.1149_1152dupATTT	p.His385IlefsTer11	p.H385Ifs*11	ENST00000274335		383	ata/aTATTta																																																																														
ABL1	0	MSKCC	GRCh37	9	133760514	133760514	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			759	80	486	0	ENST00000318560.5:c.2838delC	p.Lys947SerfsTer122	p.K947Sfs*122	ENST00000318560	NM_005157.4	946	gCc/gc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44913189	44913189	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000507-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1338	418	742	3	ENST00000377967.4:c.866delT	p.Phe289SerfsTer36	p.F289Sfs*36	ENST00000377967	NM_021140.2	288	taT/ta																																																																														
SPEN	0	MSKCC	GRCh37	1	16263754	16263754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000524-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	110	360	0	ENST00000375759.3:c.10123G>A	p.Gly3375Ser	p.G3375S	ENST00000375759	NM_015001.2	3375	Ggt/Agt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390874	139390877	+	frameshift_variant	Frame_Shift_Del	DEL	GCTC	GCTC	-			P-0000524-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			46	56	287	0	ENST00000277541.6:c.7314_7317delGAGC	p.Ser2439ArgfsTer37	p.S2439Rfs*37	ENST00000277541	NM_017617.3	2438	ccGAGC/cc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413113	139413115	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0000524-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	90	408	0	ENST00000277541.6:c.1027_1029delGCC	p.Ala343del	p.A343del	ENST00000277541	NM_017617.3	343	GCC/-																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123722	11123722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	26	370	0	ENST00000344626.4:c.2372C>T	p.Ala791Val	p.A791V	ENST00000344626	NM_003072.3	791	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0000618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	38	28	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390792	139390792	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	69	263	0	ENST00000277541.6:c.7399delT	p.Ser2467ArgfsTer10	p.S2467Rfs*10	ENST00000277541	NM_017617.3	2467	Tcg/cg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949081	44949082	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	C			P-0000618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	232	341	0	ENST00000377967.4:c.3642_3643delTGinsC	p.Gly1215GlufsTer6	p.G1215Efs*6	ENST00000377967	NM_021140.2	1214	ccTGga/ccCga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106553	27106554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000623-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			328	169	531	0	ENST00000324856.7:c.6165dupG	p.Leu2056AlafsTer43	p.L2056Afs*43	ENST00000324856	NM_006015.4	2055	atg/atGg																																																																														
RB1	0	MSKCC	GRCh37	13	49030342	49030342	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0000790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	126	215	0	ENST00000267163.4:c.1817A>G	p.Tyr606Cys	p.Y606C	ENST00000267163	NM_000321.2	606	tAt/tGt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36206772	36206776	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGT	GGCGT	-			P-0000790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	13	121	0	ENST00000300305.3:c.736_740delACGCC	p.Thr246GlnfsTer13	p.T246Qfs*13	ENST00000300305		246	ACGCCc/c																																																																														
KDM6A	0	MSKCC	GRCh37	X	44928997	44928998	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000792-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			766	299	456	0	ENST00000377967.4:c.2098dupT	p.Ser700PhefsTer30	p.S700Ffs*30	ENST00000377967	NM_021140.2	699	-/T																																																																														
KDM6A	0	MSKCC	GRCh37	X	44937720	44937721	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0000948-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	33	427	0	ENST00000377967.4:c.2909_2910delTA	p.Ile970ThrfsTer8	p.I970Tfs*8	ENST00000377967	NM_021140.2	970	ATa/a																																																																														
JAK1	0	MSKCC	GRCh37	1	65301138	65301138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			784	90	259	0	ENST00000342505.4:c.3310C>T	p.Leu1104Phe	p.L1104F	ENST00000342505	NM_002227.2	1104	Ctt/Ttt																																																																														
RASA1	0	MSKCC	GRCh37	5	86675669	86675669	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0000980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	199	131	0	ENST00000274376.6:c.2603+2T>A		p.X868_splice	ENST00000274376	NM_002890.2	868																																																																															
FAT1	0	MSKCC	GRCh37	4	187530381	187530382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	334	270	0	ENST00000441802.2:c.10161dupC	p.Val3388ArgfsTer27	p.V3388Rfs*27	ENST00000441802	NM_005245.3	3387	-/C																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139409941	139409942	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			573	78	220	0	ENST00000277541.6:c.1896dupG	p.Thr633AspfsTer12	p.T633Dfs*12	ENST00000277541	NM_017617.3	632	-/G																																																																														
BCOR	0	MSKCC	GRCh37	X	39933446	39933447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGGAACT			P-0000980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	249	143	0	ENST00000378444.4:c.1145_1152dupAGTTCCCC	p.Ala385SerfsTer60	p.A385Sfs*60	ENST00000378444	NM_001123385.1	384	-/AGTTCCCC																																																																														
ASXL2	0	MSKCC	GRCh37	2	25982440	25982440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			657	51	362	0	ENST00000435504.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000435504		284	Cga/Tga																																																																														
SF3B1	0	MSKCC	GRCh37	2	198262721	198262721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	208	451	0	ENST00000335508.6:c.3254C>T	p.Ala1085Val	p.A1085V	ENST00000335508	NM_012433.2	1085	gCa/gTa																																																																														
MLL2	0	MSKCC	GRCh37	12	49425038	49425038	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	46	582	2	ENST00000301067.7:c.13450C>T	p.Arg4484Ter	p.R4484*	ENST00000301067	NM_003482.3	4484	Cga/Tga																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112926885	112926885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397507544		P-0001201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	52	434	0	ENST00000351677.2:c.1505C>T	p.Ser502Leu	p.S502L	ENST00000351677	NM_002834.3	502	tCa/tTa																																																																														
RASA1	0	MSKCC	GRCh37	5	86681188	86681189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	179	352	0	ENST00000274376.6:c.2830dupG	p.Val944GlyfsTer6	p.V944Gfs*6	ENST00000274376	NM_002890.2	943	-/G																																																																														
BCOR	0	MSKCC	GRCh37	X	39930340	39930341	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	265	812	1	ENST00000378444.4:c.3123dupC	p.Glu1042ArgfsTer37	p.E1042Rfs*37	ENST00000378444	NM_001123385.1	1041	-/C																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413072	139413076	+	missense_variant	Missense_Mutation	ONP	AAGGA	AAGGA	GAGGC			P-0001201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	164	431	0	ENST00000277541.6:c.1066_1070delinsGCCTC	p.Ser356_Phe357delinsAlaSer	p.S356_F357delinsAS	ENST00000277541	NM_017617.3	356	TCCTTc/GCCTCc																																																																														
EZH2	0	MSKCC	GRCh37	7	148516749	148516749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	216	287	0	ENST00000320356.2:c.938G>A	p.Arg313Gln	p.R313Q	ENST00000320356	NM_004456.4	313	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	20	523	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
NTRK2	0	MSKCC	GRCh37	9	87636171	87636171	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	53	278	0	ENST00000277120.3:c.2336T>C	p.Ile779Thr	p.I779T	ENST00000277120		779	aTa/aCa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911562	32911562	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	70	239	0	ENST00000380152.3:c.3070A>G	p.Ile1024Val	p.I1024V	ENST00000380152		1024	Att/Gtt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390792	139390792	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001451-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	111	262	0	ENST00000277541.6:c.7399delT	p.Ser2467ArgfsTer10	p.S2467Rfs*10	ENST00000277541	NM_017617.3	2467	Tcg/cg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106045	27106045	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001451-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	123	137	0	ENST00000324856.7:c.5656G>T	p.Glu1886Ter	p.E1886*	ENST00000324856	NM_006015.4	1886	Gag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108188115	108188115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001451-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	159	343	0	ENST00000278616.4:c.6214G>A	p.Gly2072Arg	p.G2072R	ENST00000278616	NM_000051.3	2072	Gga/Aga																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139418413	139418414	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0001451-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			78	23	81	0	ENST00000277541.6:c.158_159delTG	p.Val53GlyfsTer89	p.V53Gfs*89	ENST00000277541	NM_017617.3	53	gTG/g																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922974	44922975	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001451-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	152	435	0	ENST00000377967.4:c.1838dupA	p.Asn613LysfsTer8	p.N613Kfs*8	ENST00000377967	NM_021140.2	612	cga/cgAa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164601	36164601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002214-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			556	79	234	0	ENST00000300305.3:c.1274C>T	p.Pro425Leu	p.P425L	ENST00000300305		425	cCg/cTg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	182	264	1	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	267	463	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450366	50450366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	194	325	0	ENST00000331340.3:c.550C>T	p.Arg184Trp	p.R184W	ENST00000331340	NM_006060.4	184	Cgg/Tgg																																																																														
MLL2	0	MSKCC	GRCh37	12	49440404	49440404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	183	330	0	ENST00000301067.7:c.4406G>A	p.Trp1469Ter	p.W1469*	ENST00000301067	NM_003482.3	1469	tGg/tAg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99459336	99459337	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCGGCACAATTACTGCTCCAAAG			P-0003327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	273	389	0	ENST00000268035.6:c.1973_1996dupACCGGCACAATTACTGCTCCAAAG	p.Arg659_Asp666dup	p.R659_D666dup	ENST00000268035	NM_000875.3	659	tac/tACCGGCACAATTACTGCTCCAAAGac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390734	139390735	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGGGGGC			P-0003327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	177	334	0	ENST00000277541.6:c.7449_7456dupGCCCCCCT	p.Ser2486CysfsTer106	p.S2486Cfs*106	ENST00000277541	NM_017617.3	2486	tcg/tGCCCCCCTcg																																																																														
DAXX	0	MSKCC	GRCh37	6	33287157	33287157	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0003469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	189	233	0	ENST00000374542.5:c.1940G>C	p.Ser647Thr	p.S647T	ENST00000374542	NM_001141970.1	647	aGc/aCc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78727889	78727889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	280	431	0	ENST00000306801.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000306801	NM_020761.2	245	gCc/gTc																																																																														
MEN1	0	MSKCC	GRCh37	11	64577260	64577266	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGATA	GAGGATA	-			P-0003469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			33	230	367	0	ENST00000337652.1:c.316_322del	p.Tyr106GlufsTer11	p.Y106Efs*11	ENST00000337652	NM_130803.2	106	TATCCTCga/ga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	140	211	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																														
BCOR	0	MSKCC	GRCh37	X	39911573	39911573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	76	315	0	ENST00000378444.4:c.5057delA	p.Asn1686ThrfsTer39	p.N1686Tfs*39	ENST00000378444	NM_001123385.1	1686	aAc/ac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	33	66	0				ENST00000310581	NM_198253.2																																																																																
FAM46C	0	MSKCC	GRCh37	1	118166323	118166323	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	301	459	0	ENST00000369448.3:c.833T>A	p.Phe278Tyr	p.F278Y	ENST00000369448	NM_017709.3	278	tTc/tAc																																																																														
ETV1	0	MSKCC	GRCh37	7	13946194	13946194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	47	313	0	ENST00000405192.2:c.902G>T	p.Arg301Leu	p.R301L	ENST00000405192	NM_001163147.1	301	cGg/cTg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106526658	106526658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	277	422	0	ENST00000359195.3:c.2951C>A	p.Pro984Gln	p.P984Q	ENST00000359195	NM_002649.2	984	cCa/cAa																																																																														
CCNE1	0	MSKCC	GRCh37	19	30313484	30313484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	295	429	0	ENST00000262643.3:c.1084A>G	p.Thr362Ala	p.T362A	ENST00000262643	NM_001238.2	362	Acc/Gcc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391219	139391246	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGTATTGGTTCGGCACCATGCCGCTC	GTTGTATTGGTTCGGCACCATGCCGCTC	-			P-0004371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	1102	399	0	ENST00000277541.6:c.6945_6972delGAGCGGCATGGTGCCGAACCAATACAAC	p.Gln2315HisfsTer12	p.Q2315Hfs*12	ENST00000277541	NM_017617.3	2315	caGAGCGGCATGGTGCCGAACCAATACAAC/ca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139397636	139397637	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAG			P-0004371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	680	385	0	ENST00000277541.6:c.5164_5165insCTC	p.Val1721_Gln1722insPro	p.V1721_Q1722insP	ENST00000277541	NM_017617.3	1722	cag/cCTCag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	126	651	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	71	702	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106525	27106525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	51	861	0	ENST00000324856.7:c.6136G>C	p.Val2046Leu	p.V2046L	ENST00000324856	NM_006015.4	2046	Gtg/Ctg																																																																														
KDR	0	MSKCC	GRCh37	4	55963919	55963919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41469552		P-0004887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	41	554	0	ENST00000263923.4:c.2524C>T	p.Arg842Cys	p.R842C	ENST00000263923	NM_002253.2	842	Cgt/Tgt																																																																														
SMO	0	MSKCC	GRCh37	7	128843278	128843278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	49	802	0	ENST00000249373.3:c.385G>C	p.Val129Leu	p.V129L	ENST00000249373	NM_005631.4	129	Gta/Cta																																																																														
TSC1	0	MSKCC	GRCh37	9	135772939	135772939	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	73	558	0	ENST00000298552.3:c.2684T>A	p.Val895Asp	p.V895D	ENST00000298552	NM_001162426.1	895	gTt/gAt																																																																														
PGR	0	MSKCC	GRCh37	11	100998198	100998198	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	58	626	0	ENST00000325455.5:c.1604C>G	p.Pro535Arg	p.P535R	ENST00000325455	NM_001202474.3	535	cCg/cGg																																																																														
TSC2	0	MSKCC	GRCh37	16	2124247	2124247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	70	725	1	ENST00000219476.3:c.2402C>T	p.Ala801Val	p.A801V	ENST00000219476	NM_000548.3	801	gCc/gTc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120455	70120455	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	47	739	0	ENST00000245479.2:c.1457T>A	p.Val486Asp	p.V486D	ENST00000245479	NM_000346.3	486	gTc/gAc																																																																														
STAG2	0	MSKCC	GRCh37	X	123205045	123205045	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	51	328	0	ENST00000218089.9:c.2405T>G	p.Ile802Ser	p.I802S	ENST00000218089	NM_001042749.1	802	aTt/aGt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918596	44918597	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0005392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	392	291	0	ENST00000377967.4:c.1083_1084del	p.Tyr362Ter	p.Y362*	ENST00000377967	NM_021140.2	360	aCT/a																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399409	139399411	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0005392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	365	426	6	ENST00000277541.6:c.4732_4734delGTG	p.Val1578del	p.V1578del	ENST00000277541	NM_017617.3	1578	GTG/-																																																																														
MTOR	0	MSKCC	GRCh37	1	11169375	11169375	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	44	596	0	ENST00000361445.4:c.7500T>G	p.Ile2500Met	p.I2500M	ENST00000361445	NM_004958.3	2500	atT/atG																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250569	26250569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	804	1011	0	ENST00000446824.2:c.265G>T	p.Ala89Ser	p.A89S	ENST00000446824	NM_021018.2	89	Gct/Tct																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907099	32907101	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0005392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	251	360	0	ENST00000380152.3:c.1488_1490delTTC	p.Ser497del	p.S497del	ENST00000380152		495	gCTTct/gct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005624-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			410	518	498	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717739	89717739	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005624-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			524	85	296	0	ENST00000371953.3:c.764T>C	p.Val255Ala	p.V255A	ENST00000371953	NM_000314.4	255	gTa/gCa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949177	44949177	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0005624-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			561	218	408	0	ENST00000377967.4:c.3736+2T>C		p.X1246_splice	ENST00000377967	NM_021140.2	1246																																																																															
MGA	0	MSKCC	GRCh37	15	42003010	42003011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005624-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1050	617	984	0	ENST00000219905.7:c.2548dupA	p.Thr850AsnfsTer11	p.T850Nfs*11	ENST00000219905	NM_001164273.1	849	-/A																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	219	231	0				ENST00000310581	NM_198253.2																																																																																
CREBBP	0	MSKCC	GRCh37	16	3788606	3788606	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	420	445	0	ENST00000262367.5:c.4348T>A	p.Tyr1450Asn	p.Y1450N	ENST00000262367	NM_004380.2	1450	Tac/Aac																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066482	94066482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	452	578	0	ENST00000369303.4:c.1277G>T	p.Arg426Leu	p.R426L	ENST00000369303	NM_004440.3	426	cGa/cTa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32931894	32931894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	317	320	0	ENST00000380152.3:c.7633G>A	p.Val2545Ile	p.V2545I	ENST00000380152		2545	Gtt/Att																																																																														
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	193	378	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	27	648	0	ENST00000269305.4:c.815T>A	p.Val272Glu	p.V272E	ENST00000269305	NM_001126112.2	272	gTg/gAg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396911	139396911	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	178	275	1	ENST00000277541.6:c.5197C>T	p.Gln1733Ter	p.Q1733*	ENST00000277541	NM_017617.3	1733	Cag/Tag																																																																														
MGA	0	MSKCC	GRCh37	15	42053937	42053937	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	282	608	1	ENST00000219905.7:c.7399G>T	p.Ala2467Ser	p.A2467S	ENST00000219905	NM_001164273.1	2467	Gcc/Tcc																																																																														
MITF	0	MSKCC	GRCh37	3	69928373	69928373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	34	435	1	ENST00000352241.4:c.193C>T	p.Arg65Cys	p.R65C	ENST00000352241	NM_198159.2	65	Cgt/Tgt																																																																														
BCOR	0	MSKCC	GRCh37	X	39933142	39933143	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0006690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	196	237	0	ENST00000378444.4:c.1455_1456dupAA	p.Thr486LysfsTer43	p.T486Kfs*43	ENST00000378444	NM_001123385.1	486	aca/aAAca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399836	139399836	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs41309766		P-0006690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	20	484	0	ENST00000277541.6:c.4512delC	p.Cys1505ValfsTer75	p.C1505Vfs*75	ENST00000277541	NM_017617.3	1504	caC/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	323	361	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482369	56482369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	461	314	0	ENST00000267101.3:c.917C>G	p.Pro306Arg	p.P306R	ENST00000267101	NM_001982.3	306	cCt/cGt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528558	89528558	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	34	210	0	ENST00000336596.2:c.2858A>T	p.Lys953Met	p.K953M	ENST00000336596	NM_005233.5	953	aAg/aTg																																																																														
KDM5A	0	MSKCC	GRCh37	12	459909	459909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	151	310	0	ENST00000399788.2:c.1186C>T	p.Arg396Trp	p.R396W	ENST00000399788	NM_001042603.1	396	Cgg/Tgg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879831	37879831	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	311	355	0	ENST00000269571.5:c.2126A>T	p.Gln709Leu	p.Q709L	ENST00000269571		709	cAg/cTg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45860951	45860951	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	138	406	0	ENST00000391945.4:c.1244C>G	p.Thr415Ser	p.T415S	ENST00000391945	NM_000400.3	415	aCc/aGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	42	335	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
HRAS	0	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	54	355	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	23	351	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	408	377	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157517445	157517445	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	446	344	0	ENST00000346085.5:c.4009C>T	p.Arg1337Ter	p.R1337*	ENST00000346085	NM_020732.3	1337	Cga/Tga																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412686	139412688	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0007145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	498	582	0	ENST00000277541.6:c.1156_1158delAAC	p.Asn386del	p.N386del	ENST00000277541	NM_017617.3	386	AAC/-																																																																														
EP300	0	MSKCC	GRCh37	22	41572256	41572257	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTGTGATCCGCAA			P-0007145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	292	317	0	ENST00000263253.7:c.4797_4798insAATTTGTGATCCGC	p.Leu1600AsnfsTer3	p.L1600Nfs*3	ENST00000263253	NM_001429.3	1595	-/TTTGTGATCCGCAA																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740533	58740533	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	643	659	0	ENST00000305921.3:c.1440delA	p.Ala481ProfsTer2	p.A481Pfs*2	ENST00000305921	NM_003620.3	480	Aaa/aa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390822	139390857	+	frameshift_variant	Frame_Shift_Del	DEL	GAATAGTGTGCACCGCCAGGCTGCTGGGGCCCAGTG	GAATAGTGTGCACCGCCAGGCTGCTGGGGCCCAGTG	CAATAGTA			P-0007145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	334	390	0	ENST00000277541.6:c.7334_7369delinsTACTATTG	p.Pro2445LeufsTer23	p.P2445Lfs*23	ENST00000277541	NM_017617.3	2445	cCACTGGGCCCCAGCAGCCTGGCGGTGCACACTATTCtg/cTACTATTGtg																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918596	44918597	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0007499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	305	233	0	ENST00000377967.4:c.1083_1084del	p.Tyr362Ter	p.Y362*	ENST00000377967	NM_021140.2	360	aCT/a																																																																														
ARID1B	0	MSKCC	GRCh37	6	157469898	157469898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	267	303	0	ENST00000346085.5:c.2692delC	p.Arg898GlufsTer16	p.R898Efs*16	ENST00000346085	NM_020732.3	898	Cga/ga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087395	27087396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0007499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	320	414	0	ENST00000324856.7:c.1970_1971insTT	p.Ser658Ter	p.S658*	ENST00000324856	NM_006015.4	657	ctg/cTTtg																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007699-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			89	393	307	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8331643	8331643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007699-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			217	270	460	0	ENST00000356435.5:c.5473G>C	p.Gly1825Arg	p.G1825R	ENST00000356435		1825	Ggc/Cgc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87570418	87570418	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007699-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			361	104	409	0	ENST00000277120.3:c.2158A>T	p.Thr720Ser	p.T720S	ENST00000277120		720	Act/Tct																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465638	8465638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007699-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			326	25	409	0	ENST00000356435.5:c.3542G>A	p.Arg1181His	p.R1181H	ENST00000356435		1181	cGt/cAt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18534794	18534794	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007699-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			321	25	323	0	ENST00000266497.5:c.1852C>G	p.Pro618Ala	p.P618A	ENST00000266497		618	Cca/Gca																																																																														
BRD4	0	MSKCC	GRCh37	19	15353939	15353947	+	inframe_deletion	In_Frame_Del	DEL	GGGGTGGTG	GGGGTGGTG	-			P-0007699-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			130	43	64	0	ENST00000263377.2:c.2933_2941delCACCACCCC	p.Pro978_Pro980del	p.P978_P980del	ENST00000263377	NM_058243.2	978	cCACCACCCCag/cag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8492927	8492927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	872	420	1	ENST00000356435.5:c.2402C>A	p.Thr801Lys	p.T801K	ENST00000356435		801	aCa/aAa																																																																														
BCL6	0	MSKCC	GRCh37	3	187444600	187444630	+	frameshift_variant	Frame_Shift_Del	DEL	CACTGTGGGTCTGCAGCGTGTGCCTCTTGAG	CACTGTGGGTCTGCAGCGTGTGCCTCTTGAG	-			P-0008045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	136	276	0	ENST00000232014.4:c.1597_1627delCTCAAGAGGCACACGCTGCAGACCCACAGTG	p.Leu533ThrfsTer47	p.L533Tfs*47	ENST00000232014	NM_001130845.1	533	CTCAAGAGGCACACGCTGCAGACCCACAGTGac/ac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105586	27105586	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	686	490	0	ENST00000324856.7:c.5197G>T	p.Glu1733Ter	p.E1733*	ENST00000324856	NM_006015.4	1733	Gag/Tag																																																																														
RIT1	0	MSKCC	GRCh37	1	155874524	155874524	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0008151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	273	613	0	ENST00000368323.3:c.235C>G	p.Gln79Glu	p.Q79E	ENST00000368323	NM_006912.5	79	Cag/Gag																																																																														
IGF1R	0	MSKCC	GRCh37	15	99472802	99472802	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	398	552	0	ENST00000268035.6:c.2798T>G	p.Phe933Cys	p.F933C	ENST00000268035	NM_000875.3	933	tTc/tGc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850781	63850782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	445	685	1	ENST00000279873.7:c.1560dupA	p.Asp521ArgfsTer7	p.D521Rfs*7	ENST00000279873	NM_032199.2	520	aca/acAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	25	435	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
BLM	0	MSKCC	GRCh37	15	91328261	91328261	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	48	439	0	ENST00000355112.3:c.2773T>C	p.Ser925Pro	p.S925P	ENST00000355112	NM_000057.2	925	Tct/Cct																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164544	36164545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTT			P-0008688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	37	294	0	ENST00000300305.3:c.1327_1330dupAACC	p.Pro444GlnfsTer157	p.P444Qfs*157	ENST00000300305		444	ccc/cAACCcc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350902	89350902	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	57	1565	0	ENST00000301030.4:c.2048delA	p.Lys683SerfsTer2	p.K683Sfs*2	ENST00000301030	NM_001256183.1	683	aAg/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	255	403	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
MTOR	0	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	67	535	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716329	52716329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	38	403	0	ENST00000322088.6:c.773G>A	p.Arg258His	p.R258H	ENST00000322088	NM_014225.5	258	cGc/cAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390866	139390867	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CTGCCTGGCTCGGCTCTCCACTCAGGAAGCTC			P-0008768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	276	343	0	ENST00000277541.6:c.7293_7324dupGAGCTTCCTGAGTGGAGAGCCGAGCCAGGCAG	p.Asp2442GlyfsTer4	p.D2442Gfs*4	ENST00000277541	NM_017617.3	2442	gac/gGAGCTTCCTGAGTGGAGAGCCGAGCCAGGCAGac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009317-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			289	56	328	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
MLL3	0	MSKCC	GRCh37	7	151879574	151879574	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009317-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			227	19	252	0	ENST00000262189.6:c.5371C>T	p.Gln1791Ter	p.Q1791*	ENST00000262189	NM_170606.2	1791	Cag/Tag																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274768	123274768	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	53	381	0	ENST00000358487.5:c.1150G>C	p.Gly384Arg	p.G384R	ENST00000358487	NM_000141.4	384	Ggg/Cgg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112212	115112212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	101	209	1	ENST00000257566.3:c.1528C>T	p.Gln510Ter	p.Q510*	ENST00000257566	NM_016569.3	510	Caa/Taa																																																																														
BCOR	0	MSKCC	GRCh37	X	39914723	39914723	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	32	314	0	ENST00000378444.4:c.4639delC	p.Arg1547AspfsTer21	p.R1547Dfs*21	ENST00000378444	NM_001123385.1	1547	Cga/ga																																																																														
ABL1	0	MSKCC	GRCh37	9	133759488	133759488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	615	525	0	ENST00000318560.5:c.1811T>A	p.Ile604Asn	p.I604N	ENST00000318560	NM_005157.4	604	aTc/aAc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99459326	99459327	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTACCTTTACCGGCACAATTACTGCTCCAAAGGT			P-0009832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	319	369	0	ENST00000268035.6:c.1963_1996+2dupGGCTACCTTTACCGGCACAATTACTGCTCCAAAGGT		p.G655_G666dup	ENST00000268035	NM_000875.3	655	-/GGCTACCTTTACCGGCACAATTACTGCTCCAAAGGT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	449	270	0				ENST00000310581	NM_198253.2																																																																																
KRAS	0	MSKCC	GRCh37	12	25380254	25380254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	647	537	0	ENST00000256078.4:c.204G>C	p.Arg68Ser	p.R68S	ENST00000256078	NM_033360.2	68	agG/agC																																																																														
JAK1	0	MSKCC	GRCh37	1	65309887	65309887	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	552	376	1	ENST00000342505.4:c.2263C>T	p.Arg755Ter	p.R755*	ENST00000342505	NM_002227.2	755	Cga/Tga																																																																														
BCOR	0	MSKCC	GRCh37	X	39931847	39931848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTAA			P-0010654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	698	224	0	ENST00000378444.4:c.2751_2752insTTAC	p.Gln918LeufsTer29	p.Q918Lfs*29	ENST00000378444	NM_001123385.1	917	-/TTAC																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	183	451	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114910764	114910764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	433	892	3	ENST00000543371.1:c.883C>T	p.Pro295Ser	p.P295S	ENST00000543371	NM_001198531.1	295	Ccc/Tcc																																																																														
EP300	0	MSKCC	GRCh37	22	41572921	41572921	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	229	546	1	ENST00000263253.7:c.5206C>T	p.Gln1736Ter	p.Q1736*	ENST00000263253	NM_001429.3	1736	Cag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0011474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	24	355	1	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																														
MLL3	0	MSKCC	GRCh37	7	151845759	151845759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	69	598	1	ENST00000262189.6:c.13253G>A	p.Arg4418Lys	p.R4418K	ENST00000262189	NM_170606.2	4418	aGg/aAg																																																																														
MGA	0	MSKCC	GRCh37	15	42058967	42058967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1210	73	876	0	ENST00000219905.7:c.8687C>A	p.Ser2896Tyr	p.S2896Y	ENST00000219905	NM_001164273.1	2896	tCt/tAt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99456347	99456347	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	56	436	0	ENST00000268035.6:c.1664A>G	p.Asp555Gly	p.D555G	ENST00000268035	NM_000875.3	555	gAc/gGc																																																																														
BCOR	0	MSKCC	GRCh37	X	39933047	39933047	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	58	337	0	ENST00000378444.4:c.1552G>T	p.Glu518Ter	p.E518*	ENST00000378444	NM_001123385.1	518	Gaa/Taa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53247559	53247559	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	51	379	1	ENST00000375401.3:c.250A>C	p.Asn84His	p.N84H	ENST00000375401	NM_004187.3	84	Aac/Cac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395219	139395220	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0011474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	154	503	0	ENST00000277541.6:c.5718_5719del	p.Pro1907GlyfsTer35	p.P1907Gfs*35	ENST00000277541	NM_017617.3	1906	gcGCcg/gccg																																																																														
ARID2	0	MSKCC	GRCh37	12	46231424	46231425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	131	385	0	ENST00000334344.6:c.1265dup	p.Tyr423IlefsTer38	p.Y423Ifs*38	ENST00000334344	NM_152641.2	422	cta/cTta																																																																														
MLL2	0	MSKCC	GRCh37	12	49436083	49436083	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	13	126	0	ENST00000301067.7:c.5898del	p.Gly1967ValfsTer80	p.G1967Vfs*80	ENST00000301067	NM_003482.3	1966	ccC/cc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056160	27056160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	75	283	0	ENST00000324856.7:c.1156C>T	p.Gln386Ter	p.Q386*	ENST00000324856	NM_006015.4	386	Cag/Tag																																																																														
PRDM1	639	MSKCC	GRCh37	6	106552838	106552838	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs367766895		P-0012051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1461	184	528	0	ENST00000369096.4:c.803G>A	p.Arg268His	p.R268H	ENST00000369096	NM_001198.3	268	cGt/cAt																																																																														
MET	0	MSKCC	GRCh37	7	116435733	116435733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	238	311	0	ENST00000397752.3:c.3823G>A	p.Glu1275Lys	p.E1275K	ENST00000397752	NM_000245.2	1275	Gag/Aag																																																																														
ATM	0	MSKCC	GRCh37	11	108115684	108115685	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCATTATTGAATTATTTCAACTGCAAATTTATATCCATCATCCGAAAGGAGCCAA			P-0012051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	57	228	0	ENST00000278616.4:c.833_887dup	p.Lys296AsnfsTer4	p.K296Nfs*4	ENST00000278616	NM_000051.3	278	gtc/gTCATTATTGAATTATTTCAACTGCAAATTTATATCCATCATCCGAAAGGAGCCAAtc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	473	810	1	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																														
BCOR	0	MSKCC	GRCh37	X	39922282	39922282	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	173	272	0	ENST00000378444.4:c.3890C>A	p.Ser1297Ter	p.S1297*	ENST00000378444	NM_001123385.1	1297	tCa/tAa																																																																														
NSD1	0	MSKCC	GRCh37	5	176684087	176684087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	411	479	0	ENST00000439151.2:c.4901G>C	p.Arg1634Pro	p.R1634P	ENST00000439151	NM_022455.4	1634	cGg/cCg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139397654	139397654	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	590	360	0	ENST00000277541.6:c.5147A>C	p.Tyr1716Ser	p.Y1716S	ENST00000277541	NM_017617.3	1716	tAc/tCc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44870230	44870230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	465	297	0	ENST00000377967.4:c.409G>C	p.Gly137Arg	p.G137R	ENST00000377967	NM_021140.2	137	Ggt/Cgt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390905	139390906	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GGTGGCCGCTGGCTGCTGAGCTCACGCCAAGGTGCGGCTGTGGTGGT			P-0012652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	211	290	0	ENST00000277541.6:c.7239_7285dup	p.Leu2429HisfsTer9	p.L2429Hfs*9	ENST00000277541	NM_017617.3	2429	ctg/cACCACCACAGCCGCACCTTGGCGTGAGCTCAGCAGCCAGCGGCCACCtg																																																																														
SPEN	0	MSKCC	GRCh37	1	16256020	16256021	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0012652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	618	336	0	ENST00000375759.3:c.3287_3288del	p.Val1096GlyfsTer25	p.V1096Gfs*25	ENST00000375759	NM_015001.2	1095	tcTGtg/tctg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274734	123274734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	531	533	0	ENST00000358487.5:c.1184T>A	p.Val395Asp	p.V395D	ENST00000358487	NM_000141.4	395	gTc/gAc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29130570	29130570	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	548	503	0	ENST00000328354.6:c.140C>G	p.Pro47Arg	p.P47R	ENST00000328354	NM_007194.3	47	cCa/cGa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396878	139396879	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCGGCCGCCGCCACGTACATGAAGTGCAGCTGCGCCGGCGGGGGCGGCTCCACGGT			P-0013084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	58	285	0	ENST00000277541.6:c.5173_5229dup	p.Thr1725_Ala1743dup	p.T1725_A1743dup	ENST00000277541	NM_017617.3	1725	-/ACCGTGGAGCCGCCCCCGCCGGCGCAGCTGCACTTCATGTACGTGGCGGCGGCCGCC																																																																														
TP53	0	MSKCC	GRCh37	17	7578206	7578217	+	inframe_deletion	In_Frame_Del	DEL	TATGTCGAAAAG	TATGTCGAAAAG	-			P-0013084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	583	732	0	ENST00000269305.4:c.632_643del	p.Thr211_His214del	p.T211_H214del	ENST00000269305	NM_001126112.2	211	aCTTTTCGACATAgt/agt																																																																														
MGA	0	MSKCC	GRCh37	15	42041454	42041455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1295	788	928	0	ENST00000219905.7:c.5651dup	p.Ser1885IlefsTer8	p.S1885Ifs*8	ENST00000219905	NM_001164273.1	1883	-/C																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139397639	139397639	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	369	520	0	ENST00000277541.6:c.5162T>G	p.Val1721Gly	p.V1721G	ENST00000277541	NM_017617.3	1721	gTg/gGg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	526	594	0	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																																																														
SDHC	0	MSKCC	GRCh37	1	161298206	161298206	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148566767		P-0013838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	550	630	2	ENST00000367975.2:c.98C>T	p.Thr33Met	p.T33M	ENST00000367975	NM_003001.3	33	aCg/aTg																																																																														
ABL1	0	MSKCC	GRCh37	9	133760377	133760378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	342	507	2	ENST00000318560.5:c.2705dup	p.Pro903ThrfsTer37	p.P903Tfs*37	ENST00000318560	NM_005157.4	900	-/C																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390843	139390844	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTGGGGCCCAGTG			P-0013838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	213	472	0	ENST00000277541.6:c.7334_7347dup	p.Ser2450HisfsTer32	p.S2450Hfs*32	ENST00000277541	NM_017617.3	2449	-/CACTGGGCCCCAGC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0014382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	113	253	0				ENST00000310581	NM_198253.2																																																																																
INSR	0	MSKCC	GRCh37	19	7166282	7166282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	74	680	0	ENST00000302850.5:c.1744G>T	p.Gly582Cys	p.G582C	ENST00000302850	NM_000208.2	582	Ggt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	28	389	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	47	243	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
DIS3	0	MSKCC	GRCh37	13	73346337	73346337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	74	395	0	ENST00000377767.4:c.1463A>G	p.Asp488Gly	p.D488G	ENST00000377767	NM_014953.3	488	gAt/gGt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3820762	3820762	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1706	246	984	2	ENST00000262367.5:c.2689C>T	p.Gln897Ter	p.Q897*	ENST00000262367	NM_004380.2	897	Cag/Tag																																																																														
MDC1	0	MSKCC	GRCh37	6	30670886	30670886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1171	130	600	0	ENST00000376406.3:c.5860C>T	p.His1954Tyr	p.H1954Y	ENST00000376406	NM_014641.2	1954	Cat/Tat																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942756	44942756	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	123	662	0	ENST00000377967.4:c.3336del	p.Val1113TyrfsTer7	p.V1113Yfs*7	ENST00000377967	NM_021140.2	1112	gtC/gt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399421	139399423	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0014405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	894	588	4	ENST00000277541.6:c.4720_4722del	p.Leu1574del	p.L1574del	ENST00000277541	NM_017617.3	1574	CTG/-																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0014472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	45	314	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0014472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	45	314	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
ATM	0	MSKCC	GRCh37	11	108099987	108099988	+	missense_variant	Missense_Mutation	DNP	AG	AG	GT			P-0014472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	68	391	1	ENST00000278616.4:c.268_269delinsGT	p.Arg90Val	p.R90V	ENST00000278616	NM_000051.3	90	AGg/GTg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266041	41266041	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	47	286	0	ENST00000349496.5:c.39del	p.Met14TrpfsTer33	p.M14Wfs*33	ENST00000349496	NM_001904.3	13	gCc/gc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44894216	44894225	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCCAATGC	TGTCCAATGC	-			P-0014472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	63	462	0	ENST00000377967.4:c.607_616del	p.Ser203LysfsTer36	p.S203Kfs*36	ENST00000377967	NM_021140.2	202	tTGTCCAATGCt/tt																																																																														
SPEN	0	MSKCC	GRCh37	1	16255092	16255093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	210	490	1	ENST00000375759.3:c.2363dup	p.Asn788LysfsTer2	p.N788Kfs*2	ENST00000375759	NM_015001.2	786	aca/acAa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171600	36171600	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0014709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	27	283	0	ENST00000300305.3:c.965C>G	p.Ser322Ter	p.S322*	ENST00000300305		322	tCa/tGa																																																																														
LATS2	0	MSKCC	GRCh37	13	21555639	21555640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	112	637	0	ENST00000382592.4:c.2630dup	p.Asn878LysfsTer18	p.N878Kfs*18	ENST00000382592	NM_014572.2	877	cca/ccCa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992589	72992589	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	249	539	0	ENST00000268489.5:c.1456G>T	p.Glu486Ter	p.E486*	ENST00000268489	NM_006885.3	486	Gag/Tag																																																																														
GNAS	0	MSKCC	GRCh37	20	57484617	57484617	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	139	466	0	ENST00000371085.3:c.701G>A	p.Trp234Ter	p.W234*	ENST00000371085	NM_000516.4	234	tGg/tAg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36206817	36206817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	172	454	0	ENST00000300305.3:c.695G>T	p.Arg232Leu	p.R232L	ENST00000300305		232	cGg/cTg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252856	36252857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0014709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	91	366	0	ENST00000300305.3:c.504_505dup	p.Arg169LysfsTer8	p.R169Kfs*8	ENST00000300305		169	aga/aAAga																																																																														
EP300	0	MSKCC	GRCh37	22	41566474	41566474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	147	534	0	ENST00000263253.7:c.4351C>T	p.His1451Tyr	p.H1451Y	ENST00000263253	NM_001429.3	1451	Cat/Tat																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259284	89259284	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	153	414	0	ENST00000336596.2:c.428T>C	p.Ile143Thr	p.I143T	ENST00000336596	NM_005233.5	143	aTt/aCt																																																																														
TET2	0	MSKCC	GRCh37	4	106196490	106196491	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0014709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	149	454	0	ENST00000380013.4:c.4825_4826dup	p.Leu1609PhefsTer2	p.L1609Ffs*2	ENST00000380013	NM_001127208.2	1608	tat/taTTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0014961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	109	470	1				ENST00000310581	NM_198253.2																																																																																
ARID1A	0	MSKCC	GRCh37	1	27101138	27101138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	323	664	0	ENST00000324856.7:c.4420C>T	p.Gln1474Ter	p.Q1474*	ENST00000324856	NM_006015.4	1474	Caa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106751	27106751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	266	577	0	ENST00000324856.7:c.6364del	p.Leu2122SerfsTer13	p.L2122Sfs*13	ENST00000324856	NM_006015.4	2121	aCc/ac																																																																														
EP300	0	MSKCC	GRCh37	22	41572265	41572265	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	276	571	0	ENST00000263253.7:c.4795del	p.Arg1599AlafsTer25	p.R1599Afs*25	ENST00000263253	NM_001429.3	1598	atC/at																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390867	139390870	+	frameshift_variant	Frame_Shift_Del	DEL	CTGC	CTGC	-			P-0014961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	454	595	0	ENST00000277541.6:c.7321_7324del	p.Ala2441ThrfsTer35	p.A2441Tfs*35	ENST00000277541	NM_017617.3	2441	GCAGac/ac																																																																														
TP53	0	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	213	590	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																														
IDH1	0	MSKCC	GRCh37	2	209116175	209116175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	65	421	0	ENST00000345146.2:c.101A>G	p.Tyr34Cys	p.Y34C	ENST00000345146	NM_005896.2	34	tAc/tGc																																																																														
FLT1	0	MSKCC	GRCh37	13	29041164	29041164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	90	620	1	ENST00000282397.4:c.264C>A	p.Phe88Leu	p.F88L	ENST00000282397	NM_002019.4	88	ttC/ttA																																																																														
TERT	0	MSKCC	GRCh37	5	1294537	1294537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	131	274	1	ENST00000310581.5:c.464G>A	p.Arg155His	p.R155H	ENST00000310581	NM_198253.2	155	cGc/cAc																																																																														
NEGR1	0	MSKCC	GRCh37	1	71873219	71873219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	54	445	3	ENST00000357731.5:c.975C>A	p.Ser325Arg	p.S325R	ENST00000357731	NM_173808.2	325	agC/agA																																																																														
DDR2	0	MSKCC	GRCh37	1	162737108	162737108	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	91	492	0	ENST00000367921.3:c.1252A>T	p.Ile418Phe	p.I418F	ENST00000367921	NM_006182.2	418	Atc/Ttc																																																																														
RARA	0	MSKCC	GRCh37	17	38508760	38508760	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	178	472	1	ENST00000254066.5:c.807+1G>T		p.X269_splice	ENST00000254066	NM_000964.3	269																																																																															
KEAP1	0	MSKCC	GRCh37	19	10600364	10600364	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	234	655	0	ENST00000171111.5:c.1491del	p.Trp497CysfsTer3	p.W497Cfs*3	ENST00000171111	NM_203500.1	497	tgG/tg																																																																														
PMS1	0	MSKCC	GRCh37	2	190732527	190732527	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	30	344	0	ENST00000441310.2:c.2345T>G	p.Leu782Arg	p.L782R	ENST00000441310	NM_000534.4	782	cTt/cGt																																																																														
MLH1	0	MSKCC	GRCh37	3	37089163	37089163	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	63	423	2	ENST00000231790.2:c.1885G>T	p.Glu629Ter	p.E629*	ENST00000231790	NM_000249.3	629	Gaa/Taa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32180627	32180627	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	184	515	0	ENST00000375023.3:c.2500A>G	p.Thr834Ala	p.T834A	ENST00000375023	NM_004557.3	834	Act/Gct																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967876	93967876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	70	578	0	ENST00000369303.4:c.2051G>A	p.Ser684Asn	p.S684N	ENST00000369303	NM_004440.3	684	aGc/aAc																																																																														
ESR1	0	MSKCC	GRCh37	6	152332824	152332824	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	74	517	0	ENST00000206249.3:c.1130A>T	p.His377Leu	p.H377L	ENST00000206249	NM_000125.3	377	cAc/cTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521276	8521276	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	129	298	0	ENST00000356435.5:c.961+1G>T		p.X321_splice	ENST00000356435		321																																																																															
NOTCH1	0	MSKCC	GRCh37	9	139399541	139399541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	157	449	0	ENST00000277541.6:c.4602G>T	p.Gln1534His	p.Q1534H	ENST00000277541	NM_017617.3	1534	caG/caT																																																																														
KDM5C	0	MSKCC	GRCh37	X	53227970	53227970	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	200	683	0	ENST00000375401.3:c.2344G>T	p.Glu782Ter	p.E782*	ENST00000375401	NM_004187.3	782	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	221	332	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0030876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	21	235	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
JAK2	0	MSKCC	GRCh37	9	5044449	5044449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	220	374	0	ENST00000381652.3:c.397C>T	p.Arg133Trp	p.R133W	ENST00000381652	NM_004972.3	133	Cgg/Tgg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856008	111856008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	146	152	0	ENST00000341259.2:c.59C>T	p.Ala20Val	p.A20V	ENST00000341259	NM_005475.2	20	gCg/gTg																																																																														
CBL	0	MSKCC	GRCh37	11	119142447	119142447	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs199739868		P-0030876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	185	289	0	ENST00000264033.4:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000264033	NM_005188.3	149	cGa/cAa																																																																														
RAD51	0	MSKCC	GRCh37	15	40998378	40998378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	53	292	0	ENST00000267868.3:c.229G>A	p.Glu77Lys	p.E77K	ENST00000267868	NM_002875.4	77	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	690	505	4	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CYLD	0	MSKCC	GRCh37	16	50783832	50783832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	280	676	2	ENST00000398568.2:c.223C>G	p.Leu75Val	p.L75V	ENST00000398568	NM_001042412.1	75	Cta/Gta																																																																														
TP53	0	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	259	557	0	ENST00000269305.4:c.102dupC	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																														
KIT	0	MSKCC	GRCh37	4	55594094	55594094	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	83	389	1	ENST00000288135.5:c.1879+1G>A		p.X627_splice	ENST00000288135	NM_000222.2	627																																																																															
FBXW7	0	MSKCC	GRCh37	4	153247172	153247172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	73	346	2	ENST00000281708.4:c.1630G>T	p.Val544Phe	p.V544F	ENST00000281708	NM_033632.3	544	Gtc/Ttc																																																																														
APC	0	MSKCC	GRCh37	5	112175753	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	TTATTACA	TTATTACA	-			P-0030880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	186	379	2	ENST00000257430.4:c.4464_4471del	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1488	TTATTACAt/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0030892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	190	386	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	122	272	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																														
APC	0	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	105	237	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	327	486	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
SMAD4	0	MSKCC	GRCh37	18	48604721	48604721	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	114	430	0	ENST00000342988.3:c.1543A>T	p.Arg515Ter	p.R515*	ENST00000342988	NM_005359.5	515	Aga/Tga																																																																														
RASA1	0	MSKCC	GRCh37	5	86675644	86675644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	90	269	0	ENST00000274376.6:c.2580C>A	p.Phe860Leu	p.F860L	ENST00000274376	NM_002890.2	860	ttC/ttA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	136	439	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	163	581	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
FAT1	0	MSKCC	GRCh37	4	187549458	187549458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	60	456	0	ENST00000441802.2:c.4660G>C	p.Asp1554His	p.D1554H	ENST00000441802	NM_005245.3	1554	Gac/Cac																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937711	36937711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	152	503	1	ENST00000361632.4:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000361632		343	Cgg/Tgg																																																																														
AKT3	0	MSKCC	GRCh37	1	243716164	243716164	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	62	533	0	ENST00000263826.5:c.1030T>A	p.Leu344Ile	p.L344I	ENST00000263826	NM_005465.4	344	Tta/Ata																																																																														
AKT3	0	MSKCC	GRCh37	1	243727075	243727075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	54	459	0	ENST00000263826.5:c.895G>T	p.Asp299Tyr	p.D299Y	ENST00000263826	NM_005465.4	299	Gat/Tat																																																																														
ATM	0	MSKCC	GRCh37	11	108218051	108218051	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	53	413	0	ENST00000278616.4:c.8630T>G	p.Leu2877Trp	p.L2877W	ENST00000278616	NM_000051.3	2877	tTg/tGg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18641505	18641505	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	154	439	0	ENST00000266497.5:c.2504T>C	p.Ile835Thr	p.I835T	ENST00000266497		835	aTc/aCc																																																																														
ARID2	0	MSKCC	GRCh37	12	46245954	46245958	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	106	453	0	ENST00000334344.6:c.4048_4052del	p.Lys1350Ter	p.K1350*	ENST00000334344	NM_152641.2	1350	AAAAGt/t																																																																														
TBX3	0	MSKCC	GRCh37	12	115112250	115112250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	10	93	0	ENST00000257566.3:c.1490C>A	p.Pro497His	p.P497H	ENST00000257566	NM_016569.3	497	cCc/cAc																																																																														
LATS2	0	MSKCC	GRCh37	13	21549233	21549233	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	113	692	0	ENST00000382592.4:c.3043A>T	p.Ser1015Cys	p.S1015C	ENST00000382592	NM_014572.2	1015	Agc/Tgc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88727454	88727454	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	122	463	0	ENST00000360948.2:c.323+2T>G		p.X108_splice	ENST00000360948	NM_001012338.2	108																																																																															
POLD1	0	MSKCC	GRCh37	19	50917054	50917054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	168	603	0	ENST00000440232.2:c.2306C>G	p.Ala769Gly	p.A769G	ENST00000440232	NM_002691.3	769	gCt/gGt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134880993	134880993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	143	464	1	ENST00000398015.3:c.1556G>T	p.Gly519Val	p.G519V	ENST00000398015	NM_004441.4	519	gGc/gTc																																																																														
LYN	0	MSKCC	GRCh37	8	56910947	56910947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	187	560	0	ENST00000519728.1:c.1093C>G	p.His365Asp	p.H365D	ENST00000519728	NM_002350.3	365	Cac/Gac																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101910019	101910019	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	93	343	0	ENST00000374994.4:c.1339G>T	p.Glu447Ter	p.E447*	ENST00000374994	NM_004612.2	447	Gaa/Taa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89448570	89448570	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	39	492	2	ENST00000336596.2:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000336596	NM_005233.5	512	Cga/Tga																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	186	484	3	ENST00000344626.4:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000344626	NM_003072.3	1192	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0030897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	306	575	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0030897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	65	241	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0030897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	65	241	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248599	212248599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	121	430	0	ENST00000342788.4:c.3668A>G	p.Lys1223Arg	p.K1223R	ENST00000342788	NM_005235.2	1223	aAg/aGg																																																																														
AKT3	0	MSKCC	GRCh37	1	243727114	243727114	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	68	435	0	ENST00000263826.5:c.856A>G	p.Lys286Glu	p.K286E	ENST00000263826	NM_005465.4	286	Aaa/Gaa																																																																														
NUP93	0	MSKCC	GRCh37	16	56864492	56864492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	125	487	0	ENST00000308159.5:c.980G>A	p.Arg327His	p.R327H	ENST00000308159	NM_014669.4	327	cGc/cAc																																																																														
LATS1	0	MSKCC	GRCh37	6	149983066	149983066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	157	556	0	ENST00000253339.5:c.3192G>A	p.Trp1064Ter	p.W1064*	ENST00000253339		1064	tgG/tgA																																																																														
PREX2	0	MSKCC	GRCh37	8	69011939	69011939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	193	614	1	ENST00000288368.4:c.2576G>T	p.Ser859Ile	p.S859I	ENST00000288368	NM_024870.2	859	aGt/aTt																																																																														
RAD21	0	MSKCC	GRCh37	8	117868498	117868498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	60	322	0	ENST00000297338.2:c.844G>A	p.Asp282Asn	p.D282N	ENST00000297338	NM_006265.2	282	Gat/Aat																																																																														
SPOP	0	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	102	492	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52714619	52714619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	88	527	1	ENST00000322088.6:c.377C>T	p.Ala126Val	p.A126V	ENST00000322088	NM_014225.5	126	gCg/gTg																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111907690	111907691	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	103	412	0	ENST00000393256.3:c.464_465insC	p.Gly156TrpfsTer5	p.G156Wfs*5	ENST00000393256	NM_006538.4	155	att/atCt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			985	21	685	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0003274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	481	792	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0003274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	25	682	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0003274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			951	26	770	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
EZH2	0	MSKCC	GRCh37	7	148515133	148515133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003274-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			656	55	450	0	ENST00000320356.2:c.1076G>T	p.Arg359Ile	p.R359I	ENST00000320356	NM_004456.4	359	aGa/aTa																																																																														
CDK12	0	MSKCC	GRCh37	17	37650823	37650823	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019819-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			878	116	595	0	ENST00000447079.4:c.2297del	p.Gly766AlafsTer16	p.G766Afs*16	ENST00000447079	NM_015083.1	765	gaG/ga																																																																														
AKT2	0	MSKCC	GRCh37	19	40748470	40748470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019819-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	104	568	1	ENST00000392038.2:c.412G>T	p.Val138Leu	p.V138L	ENST00000392038	NM_001626.4	138	Gtg/Ttg																																																																														
TOP1	0	MSKCC	GRCh37	20	39713141	39713141	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019819-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			496	77	338	1	ENST00000361337.2:c.547A>T	p.Lys183Ter	p.K183*	ENST00000361337	NM_003286.2	183	Aaa/Taa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53227685	53227685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019819-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	80	255	0	ENST00000375401.3:c.2503G>A	p.Gly835Ser	p.G835S	ENST00000375401	NM_004187.3	835	Ggc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	59	248	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	66	536	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851754	134851754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56396912		P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	98	442	3	ENST00000398015.3:c.1160C>T	p.Thr387Met	p.T387M	ENST00000398015	NM_004441.4	387	aCg/aTg																																																																														
MED12	0	MSKCC	GRCh37	X	70356452	70356454	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	82	367	0	ENST00000374080.3:c.5353_5355del	p.Lys1785del	p.K1785del	ENST00000374080		1783	AAG/-																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822609	72822609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	130	521	1	ENST00000268489.5:c.9566C>T	p.Ala3189Val	p.A3189V	ENST00000268489	NM_006885.3	3189	gCg/gTg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43738583	43738583	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	94	414	0	ENST00000382044.4:c.3040+2T>C		p.X1014_splice	ENST00000382044	NM_001141980.1	1014																																																																															
ERBB2	0	MSKCC	GRCh37	17	37879598	37879598	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	412	723	0	ENST00000269571.5:c.1973T>G	p.Val658Gly	p.V658G	ENST00000269571		658	gTg/gGg																																																																														
BRAF	0	MSKCC	GRCh37	7	140494218	140494218	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	179	856	0	ENST00000288602.6:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000288602	NM_004333.4	344	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030154-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			146	52	118	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030154-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			542	157	595	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PREX2	0	MSKCC	GRCh37	8	69020354	69020354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030154-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			454	91	390	0	ENST00000288368.4:c.2726T>C	p.Val909Ala	p.V909A	ENST00000288368	NM_024870.2	909	gTa/gCa																																																																														
IGF1R	0	MSKCC	GRCh37	15	99460015	99460015	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	102	526	0	ENST00000268035.6:c.2111A>C	p.Lys704Thr	p.K704T	ENST00000268035	NM_000875.3	704	aAa/aCa																																																																														
BBC3	0	MSKCC	GRCh37	19	47729821	47729821	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0030786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	253	723	0	ENST00000449228.1:c.568G>T	p.Glu190Ter	p.E190*	ENST00000449228	NM_001127240.2	190	Gag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108205807	108205807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	123	509	0	ENST00000278616.4:c.8122G>A	p.Asp2708Asn	p.D2708N	ENST00000278616	NM_000051.3	2708	Gat/Aat																																																																														
SUFU	0	MSKCC	GRCh37	10	104377138	104377138	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	78	719	1	ENST00000369902.3:c.1249T>G	p.Phe417Val	p.F417V	ENST00000369902	NM_016169.3	417	Ttt/Gtt																																																																														
MGA	0	MSKCC	GRCh37	15	42054048	42054048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0030792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	83	326	0	ENST00000219905.7:c.7510G>C	p.Gly2504Arg	p.G2504R	ENST00000219905	NM_001164273.1	2504	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	78	583	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139816	55139816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	58	522	1	ENST00000257290.5:c.1477G>A	p.Val493Met	p.V493M	ENST00000257290	NM_006206.4	493	Gtg/Atg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310920	123310920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	104	450	1	ENST00000358487.5:c.508C>T	p.Pro170Ser	p.P170S	ENST00000358487	NM_000141.4	170	Cct/Tct																																																																														
IGF1R	0	MSKCC	GRCh37	15	99500435	99500435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	187	777	0	ENST00000268035.6:c.3868C>T	p.Pro1290Ser	p.P1290S	ENST00000268035	NM_000875.3	1290	Ccg/Tcg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178943755	178943755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200671228		P-0030808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	139	450	1	ENST00000263967.3:c.2422C>T	p.Arg808Trp	p.R808W	ENST00000263967	NM_006218.2	808	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443923	49443924	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0030808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	217	922	0	ENST00000301067.7:c.3446_3447dup	p.Gly1150LysfsTer15	p.G1150Kfs*15	ENST00000301067	NM_003482.3	1149	-/AA																																																																														
PAK7	0	MSKCC	GRCh37	20	9546959	9546959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	100	442	0	ENST00000353224.5:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000353224	NM_177990.2	355	Gcc/Acc																																																																														
TET2	0	MSKCC	GRCh37	4	106196889	106196889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	94	409	0	ENST00000380013.4:c.5222C>T	p.Pro1741Leu	p.P1741L	ENST00000380013	NM_001127208.2	1741	cCa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	154	426	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	129	622	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66766450	66766450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	52	168	0	ENST00000374690.3:c.1462C>G	p.Gln488Glu	p.Q488E	ENST00000374690	NM_000044.3	488	Cag/Gag																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149509448	149509449	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	110	623	0	ENST00000261799.4:c.1450dup	p.Glu484GlyfsTer7	p.E484Gfs*7	ENST00000261799	NM_002609.3	484	gag/gGag																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066583	94066583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	60	430	0	ENST00000369303.4:c.1176G>T	p.Gln392His	p.Q392H	ENST00000369303	NM_004440.3	392	caG/caT																																																																														
PARK2	0	MSKCC	GRCh37	6	162864341	162864341	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	31	335	0	ENST00000366898.1:c.171+1G>T		p.X57_splice	ENST00000366898	NM_004562.2	57																																																																															
NOTCH1	0	MSKCC	GRCh37	9	139393382	139393384	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0030811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	108	640	0	ENST00000277541.6:c.6147_6149del	p.Lys2049del	p.K2049del	ENST00000277541	NM_017617.3	2049	aaGAAc/aac																																																																														
TP53	0	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	127	686	1	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																														
TSC2	0	MSKCC	GRCh37	16	2134606	2134606	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	196	855	0	ENST00000219476.3:c.4383C>G	p.Tyr1461Ter	p.Y1461*	ENST00000219476	NM_000548.3	1461	taC/taG																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178919264	178919264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	66	287	0	ENST00000263967.3:c.749A>G	p.Tyr250Cys	p.Y250C	ENST00000263967	NM_006218.2	250	tAt/tGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	64	406	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	49	367	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	49	367	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	49	367	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PREX2	0	MSKCC	GRCh37	8	68968149	68968149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	50	516	0	ENST00000288368.4:c.1178G>A	p.Gly393Glu	p.G393E	ENST00000288368	NM_024870.2	393	gGa/gAa																																																																														
ROS1	0	MSKCC	GRCh37	6	117630083	117630083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	33	270	0	ENST00000368508.3:c.6443G>A	p.Gly2148Glu	p.G2148E	ENST00000368508	NM_002944.2	2148	gGa/gAa																																																																														
MGA	0	MSKCC	GRCh37	15	42035319	42035319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	42	398	1	ENST00000219905.7:c.5161C>T	p.Pro1721Ser	p.P1721S	ENST00000219905	NM_001164273.1	1721	Cct/Tct																																																																														
IL7R	0	MSKCC	GRCh37	5	35876527	35876527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	19	441	0	ENST00000303115.3:c.1319C>T	p.Ser440Phe	p.S440F	ENST00000303115	NM_002185.3	440	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0030824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	55	425	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	73	810	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30686407	30686424	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAAGCAAGCCTTTTAA	GGTAAGCAAGCCTTTTAA	-			P-0030824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	24	290	0	ENST00000359013.4:c.338+1_338+18del		p.X113_splice	ENST00000359013	NM_001024847.2	113																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0030826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	202	687	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	215	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604764	48604765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	159	459	0	ENST00000342988.3:c.1587dup	p.His530ThrfsTer47	p.H530Tfs*47	ENST00000342988	NM_005359.5	529	tta/ttAa																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665185	138665185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	107	672	0	ENST00000330315.3:c.380A>G	p.Tyr127Cys	p.Y127C	ENST00000330315	NM_023067.3	127	tAc/tGc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974735	21974735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	51	327	0	ENST00000304494.5:c.92del	p.Leu31ArgfsTer22	p.L31Rfs*22	ENST00000304494	NM_000077.4	31	cTg/cg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974735	21974735	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	51	327	0	ENST00000304494.5:c.92del	p.Leu31ArgfsTer22	p.L31Rfs*22	ENST00000304494	NM_000077.4	31	cTg/cg																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	196	619	3	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	130	515	1	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49447305	49447305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	139	599	0	ENST00000301067.7:c.793C>T	p.Arg265Cys	p.R265C	ENST00000301067	NM_003482.3	265	Cgt/Tgt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114711339	114711343	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAT	CGGAT	-			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	119	333	0	ENST00000543371.1:c.356_360del	p.Gly119AlafsTer24	p.G119Afs*24	ENST00000543371	NM_001198531.1	118	aaCGGATcg/aacg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715988	52715988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	84	517	0	ENST00000322088.6:c.553G>T	p.Ala185Ser	p.A185S	ENST00000322088	NM_014225.5	185	Gca/Tca																																																																														
RYBP	0	MSKCC	GRCh37	3	72427690	72427690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	39	279	0	ENST00000477973.2:c.798G>A	p.Arg267His	p.R267H	ENST00000477973	NM_012234.5	267	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112173249	112173249	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	10	151	0	ENST00000257430.4:c.1959-1G>A		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																															
RBM10	0	MSKCC	GRCh37	X	47006836	47006836	+	5_prime_UTR_variant	5'UTR	SNP	C	C	T			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	144	706	1	ENST00000329236.7:c.-45C>T		p.*15*	ENST00000329236	NM_001204466.1	15																																																																															
RBM10	0	MSKCC	GRCh37	X	47041169	47041169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	158	774	1	ENST00000329236.7:c.1363G>A	p.Ala455Thr	p.A455T	ENST00000329236	NM_001204466.1	455	Gct/Act																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	168	432	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	280	557	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057877	27057877	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	338	826	1	ENST00000324856.7:c.1585C>T	p.Gln529Ter	p.Q529*	ENST00000324856	NM_006015.4	529	Cag/Tag																																																																														
PGR	0	MSKCC	GRCh37	11	100922156	100922156	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	102	429	0	ENST00000325455.5:c.2356G>A	p.Glu786Lys	p.E786K	ENST00000325455	NM_001202474.3	786	Gaa/Aaa																																																																														
MLH1	0	MSKCC	GRCh37	3	37070408	37070408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	152	359	0	ENST00000231790.2:c.1543G>A	p.Glu515Lys	p.E515K	ENST00000231790	NM_000249.3	515	Gag/Aag																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222653	53222653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	343	885	0	ENST00000375401.3:c.4283C>A	p.Pro1428His	p.P1428H	ENST00000375401	NM_004187.3	1428	cCc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0030841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	113	547	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	154	476	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	154	476	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	154	476	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579400	7579401	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	182	756	2	ENST00000269305.4:c.286dup	p.Ser96PhefsTer53	p.S96Ffs*53	ENST00000269305	NM_001126112.2	96	tct/tTct																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584784	48584785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	96	525	0	ENST00000342988.3:c.864dup	p.Gln289SerfsTer19	p.Q289Sfs*19	ENST00000342988	NM_005359.5	288	ctt/cTtt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591919	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0030841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	35	426	0	ENST00000342988.3:c.1082_1083del	p.Arg361LeufsTer16	p.R361Lfs*16	ENST00000342988	NM_005359.5	361	CGc/c																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0030842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	33	221	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
TP53	0	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	670	711	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061238	38061239	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAGTCCGGGTGCAGCGTCCAGTA			P-0030842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	279	699	0	ENST00000250448.2:c.727_750dup	p.Tyr243_Ser250dup	p.Y243_S250dup	ENST00000250448	NM_004496.3	243	-/TACTGGACGCTGCACCCGGACTCC																																																																														
APC	0	MSKCC	GRCh37	5	112177045	112177045	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	229	584	0	ENST00000257430.4:c.5756del	p.Asn1919IlefsTer51	p.N1919Ifs*51	ENST00000257430	NM_000038.5	1918	atA/at																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845678	151845678	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	153	453	0	ENST00000262189.6:c.13334del	p.Gly4445ValfsTer3	p.G4445Vfs*3	ENST00000262189	NM_170606.2	4445	gGt/gt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98270504	98270504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	80	549	0	ENST00000331920.6:c.140G>A	p.Arg47Gln	p.R47Q	ENST00000331920	NM_000264.3	47	cGg/cAg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	70	662	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
BAP1	0	MSKCC	GRCh37	3	52438535	52438535	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0030843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	72	564	0	ENST00000460680.1:c.1184C>G	p.Ser395Ter	p.S395*	ENST00000460680	NM_004656.3	395	tCa/tGa																																																																														
ELF3	0	MSKCC	GRCh37	1	201982987	201982987	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	156	676	0	ENST00000359651.3:c.836T>C	p.Ile279Thr	p.I279T	ENST00000359651		279	aTc/aCc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431689	49431699	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGGAATTGG	AAGGGAATTGG	-			P-0030843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	49	682	0	ENST00000301067.7:c.9440_9450del	p.Ala3147GlyfsTer25	p.A3147Gfs*25	ENST00000301067	NM_003482.3	3147	gCCAATTCCCTT/g																																																																														
NCOR1	0	MSKCC	GRCh37	17	15995336	15995336	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	34	365	0	ENST00000268712.3:c.2857C>G	p.Pro953Ala	p.P953A	ENST00000268712	NM_006311.3	953	Cca/Gca																																																																														
CHEK2	0	MSKCC	GRCh37	22	29092976	29092976	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0030843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	86	406	0	ENST00000328354.6:c.1009-1G>C		p.X337_splice	ENST00000328354	NM_007194.3	337																																																																															
BAP1	0	MSKCC	GRCh37	3	52443593	52443593	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	52	493	0	ENST00000460680.1:c.99C>A	p.Tyr33Ter	p.Y33*	ENST00000460680	NM_004656.3	33	taC/taA																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874403	151874403	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	60	354	0	ENST00000262189.6:c.8135T>A	p.Leu2712Ter	p.L2712*	ENST00000262189	NM_170606.2	2712	tTa/tAa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44970639	44970663	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CCATCCGCCTCATCTTGATATTGTT	CCATCCGCCTCATCTTGATATTGTT	-			P-0030843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	27	258	0	ENST00000377967.4:c.4193_*11del		p.*1398*	ENST00000377967	NM_021140.2	1397																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	136	446	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	164	556	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	274	561	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ATM	0	MSKCC	GRCh37	11	108160488	108160488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	180	550	0	ENST00000278616.4:c.4396C>T	p.Arg1466Ter	p.R1466*	ENST00000278616	NM_000051.3	1466	Cga/Tga																																																																														
WT1	0	MSKCC	GRCh37	11	32410700	32410700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	189	387	0	ENST00000332351.3:c.1458G>C	p.Trp486Cys	p.W486C	ENST00000332351	NM_024426.4	486	tgG/tgC																																																																														
KDM6A	0	MSKCC	GRCh37	X	44950052	44950052	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	160	274	0	ENST00000377967.4:c.3822del	p.Trp1275GlyfsTer17	p.W1275Gfs*17	ENST00000377967	NM_021140.2	1274	tCc/tc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057894	27057894	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	217	603	0	ENST00000324856.7:c.1602C>A	p.Tyr534Ter	p.Y534*	ENST00000324856	NM_006015.4	534	taC/taA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	157	520	1	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	277	455	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0030849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	266	876	1	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
CDK12	0	MSKCC	GRCh37	17	37618613	37618613	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	128	463	0	ENST00000447079.4:c.289G>C	p.Asp97His	p.D97H	ENST00000447079	NM_015083.1	97	Gac/Cac																																																																														
CARM1	0	MSKCC	GRCh37	19	11024602	11024602	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	143	614	0	ENST00000327064.4:c.719G>T	p.Gly240Val	p.G240V	ENST00000327064	NM_199141.1	240	gGc/gTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306758	41306759	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0030849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	81	376	1	ENST00000373198.4:c.900_901delinsTA	p.Gly301Arg	p.G301R	ENST00000373198	NM_133170.3	300	gtGGgg/gtTAgg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1941467	1941467	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	122	506	2	ENST00000382891.5:c.1846del	p.Ser616ValfsTer8	p.S616Vfs*8	ENST00000382891	NM_133335.3	615	Aaa/aa																																																																														
MED12	0	MSKCC	GRCh37	X	70345324	70345324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	162	346	0	ENST00000374080.3:c.2350C>T	p.Arg784Cys	p.R784C	ENST00000374080		784	Cgc/Tgc																																																																														
RB1	0	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	126	282	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	250	583	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
STK40	0	MSKCC	GRCh37	1	36821033	36821033	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0030863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	104	411	0	ENST00000373129.3:c.344A>G	p.Asp115Gly	p.D115G	ENST00000373129	NM_032017.1	115	gAc/gGc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11114071	11114071	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0030863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	111	417	1	ENST00000344626.4:c.1999G>T	p.Glu667Ter	p.E667*	ENST00000344626	NM_003072.3	667	Gag/Tag																																																																														
FAT1	0	MSKCC	GRCh37	4	187541457	187541457	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	101	383	0	ENST00000441802.2:c.6283del	p.Glu2095ArgfsTer12	p.E2095Rfs*12	ENST00000441802	NM_005245.3	2095	Gag/ag																																																																														
CRLF2	0	MSKCC	GRCh37	X	1325487	1325487	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	85	427	0	ENST00000381566.1:c.188A>G	p.Asn63Ser	p.N63S	ENST00000381566		63	aAc/aGc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14038648	14038648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	73	368	1	ENST00000311895.7:c.1973G>A	p.Arg658Lys	p.R658K	ENST00000311895	NM_005236.2	658	aGa/aAa																																																																														
FH	0	MSKCC	GRCh37	1	241669318	241669318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	73	385	0	ENST00000366560.3:c.889G>A	p.Val297Met	p.V297M	ENST00000366560	NM_000143.3	297	Gtg/Atg																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675139	40675139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	80	613	0	ENST00000249776.8:c.103C>A	p.Leu35Ile	p.L35I	ENST00000249776	NM_033286.3	35	Cta/Ata																																																																														
TP53	0	MSKCC	GRCh37	17	7578238	7578238	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	295	584	0	ENST00000269305.4:c.611del	p.Glu204GlyfsTer43	p.E204Gfs*43	ENST00000269305	NM_001126112.2	204	gAg/gg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18280045	18280045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	37	187	0	ENST00000222254.8:c.2128G>A	p.Val710Ile	p.V710I	ENST00000222254	NM_005027.3	710	Gtc/Atc																																																																														
EGFR	0	MSKCC	GRCh37	7	55211179	55211179	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0030867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	77	436	0	ENST00000275493.2:c.422A>T	p.Gln141Leu	p.Q141L	ENST00000275493	NM_005228.3	141	cAg/cTg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98242279	98242279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	58	474	0	ENST00000331920.6:c.1039G>A	p.Val347Ile	p.V347I	ENST00000331920	NM_000264.3	347	Gtc/Atc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	84	315	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7574032	7574032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	43	318	0	ENST00000269305.4:c.995T>A	p.Ile332Asn	p.I332N	ENST00000269305	NM_001126112.2	332	aTc/aAc																																																																														
SPEN	0	MSKCC	GRCh37	1	16245460	16245460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	55	314	0	ENST00000375759.3:c.1435G>T	p.Ala479Ser	p.A479S	ENST00000375759	NM_015001.2	479	Gcg/Tcg																																																																														
B2M	0	MSKCC	GRCh37	15	45007798	45007798	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	58	282	0	ENST00000558401.1:c.245T>C	p.Phe82Ser	p.F82S	ENST00000558401	NM_004048.2	82	tTc/tCc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88476247	88476247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	49	371	0	ENST00000360948.2:c.1885C>T	p.Leu629Phe	p.L629F	ENST00000360948	NM_001012338.2	629	Ctc/Ttc																																																																														
RBM10	0	MSKCC	GRCh37	X	47028883	47028883	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	44	339	0	ENST00000329236.7:c.187G>T	p.Glu63Ter	p.E63*	ENST00000329236	NM_001204466.1	63	Gag/Tag																																																																														
MED12	0	MSKCC	GRCh37	X	70346284	70346284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	49	438	0	ENST00000374080.3:c.2635C>T	p.Leu879Phe	p.L879F	ENST00000374080		879	Ctc/Ttc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	12	405	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	72	472	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
MET	0	MSKCC	GRCh37	7	116340214	116340214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201274041		P-0030872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	49	307	0	ENST00000397752.3:c.1076G>A	p.Arg359Gln	p.R359Q	ENST00000397752	NM_000245.2	359	cGa/cAa																																																																														
FLT4	0	MSKCC	GRCh37	5	180043925	180043925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	85	560	0	ENST00000261937.6:c.3071G>A	p.Gly1024Glu	p.G1024E	ENST00000261937	NM_182925.4	1024	gGg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0030878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	74	144	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0030878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	810	542	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856500	111856500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	64	175	0	ENST00000341259.2:c.551C>T	p.Pro184Leu	p.P184L	ENST00000341259	NM_005475.2	184	cCc/cTc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	79	379	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	91	482	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11096912	11096912	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs150949949		P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	144	810	0	ENST00000344626.4:c.403C>G	p.Pro135Ala	p.P135A	ENST00000344626	NM_003072.3	135	Cca/Gca																																																																														
TP53	0	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	135	659	2	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
KMT2D	0	MSKCC	GRCh37	12	49436102	49436102	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	62	402	2	ENST00000301067.7:c.5879del	p.Gly1960AlafsTer87	p.G1960Afs*87	ENST00000301067	NM_003482.3	1960	gGc/gc																																																																														
MTOR	0	MSKCC	GRCh37	1	11291480	11291480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	101	528	0	ENST00000361445.4:c.2526G>T	p.Trp842Cys	p.W842C	ENST00000361445	NM_004958.3	842	tgG/tgT																																																																														
GATA3	0	MSKCC	GRCh37	10	8100608	8100608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	65	719	0	ENST00000346208.3:c.582G>A	p.Met194Ile	p.M194I	ENST00000346208		194	atG/atA																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435060	49435060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	135	640	0	ENST00000301067.7:c.6493C>T	p.Pro2165Ser	p.P2165S	ENST00000301067	NM_003482.3	2165	Ccc/Tcc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43749238	43749238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	135	742	0	ENST00000382044.4:c.1568C>T	p.Ser523Phe	p.S523F	ENST00000382044	NM_001141980.1	523	tCt/tTt																																																																														
MSH6	0	MSKCC	GRCh37	2	48010427	48010427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	83	450	1	ENST00000234420.5:c.55G>A	p.Asp19Asn	p.D19N	ENST00000234420	NM_000179.2	19	Gat/Aat																																																																														
WHSC1	0	MSKCC	GRCh37	4	1956926	1956926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	152	725	0	ENST00000382891.5:c.2377C>T	p.His793Tyr	p.H793Y	ENST00000382891	NM_133335.3	793	Cac/Tac																																																																														
ROS1	0	MSKCC	GRCh37	6	117629979	117629979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	83	452	0	ENST00000368508.3:c.6547C>T	p.Pro2183Ser	p.P2183S	ENST00000368508	NM_002944.2	2183	Cca/Tca																																																																														
EGFR	0	MSKCC	GRCh37	7	55224324	55224324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	95	583	0	ENST00000275493.2:c.1105C>T	p.Leu369Phe	p.L369F	ENST00000275493	NM_005228.3	369	Ctc/Ttc																																																																														
MED12	0	MSKCC	GRCh37	X	70345222	70345222	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	83	644	0	ENST00000374080.3:c.2248T>C	p.Cys750Arg	p.C750R	ENST00000374080		750	Tgc/Cgc																																																																														
WT1	0	MSKCC	GRCh37	11	32417869	32417871	+	missense_variant	Missense_Mutation	ONP	AAG	AAG	TAA			P-0030654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	85	590	0	ENST00000332351.3:c.1181_1183delinsTTA	p.Ala394_Tyr395delinsValAsn	p.A394_Y395delinsVN	ENST00000332351	NM_024426.4	394	gCTTac/gTTAac																																																																														
KDM5A	0	MSKCC	GRCh37	12	420145	420145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	222	489	0	ENST00000399788.2:c.3122C>T	p.Pro1041Leu	p.P1041L	ENST00000399788	NM_001042603.1	1041	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	200	555	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134881022	134881022	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	108	348	0	ENST00000398015.3:c.1585G>A	p.Asp529Asn	p.D529N	ENST00000398015	NM_004441.4	529	Gat/Aat																																																																														
APC	0	MSKCC	GRCh37	5	112175389	112175389	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	68	303	0	ENST00000257430.4:c.4098del	p.Gln1367ArgfsTer48	p.Q1367Rfs*48	ENST00000257430	NM_000038.5	1366	gcT/gc																																																																														
APC	0	MSKCC	GRCh37	5	112175493	112175493	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	89	361	0	ENST00000257430.4:c.4203del	p.Ile1401MetfsTer14	p.I1401Mfs*14	ENST00000257430	NM_000038.5	1401	aTt/at																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553000	106553000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	218	602	0	ENST00000369096.4:c.965C>T	p.Thr322Met	p.T322M	ENST00000369096	NM_001198.3	322	aCg/aTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151835903	151835903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	66	449	0	ENST00000262189.6:c.14621G>A	p.Arg4874Gln	p.R4874Q	ENST00000262189	NM_170606.2	4874	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	180	308	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112170652	112170652	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	111	230	0	ENST00000257430.4:c.1748C>G	p.Ser583Ter	p.S583*	ENST00000257430	NM_000038.5	583	tCa/tGa																																																																														
KIT	0	MSKCC	GRCh37	4	55604715	55604715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	73	237	0	ENST00000288135.5:c.2923G>A	p.Asp975Asn	p.D975N	ENST00000288135	NM_000222.2	975	Gat/Aat																																																																														
PREX2	0	MSKCC	GRCh37	8	68989671	68989671	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147538692		P-0030745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	101	407	0	ENST00000288368.4:c.1609G>A	p.Val537Ile	p.V537I	ENST00000288368	NM_024870.2	537	Gtt/Att																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710518	114710518	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0030745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	119	252	0	ENST00000543371.1:c.3G>T	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	atG/atT																																																																														
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0030745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	233	352	0	ENST00000269305.4:c.375+1G>C		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	362	505	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	203	355	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271491	26271491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	143	276	0	ENST00000305910.3:c.122G>C	p.Arg41Pro	p.R41P	ENST00000305910	NM_003534.2	41	cGc/cCc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123263421	123263421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	206	296	0	ENST00000358487.5:c.1322A>G	p.Asn441Ser	p.N441S	ENST00000358487	NM_000141.4	441	aAc/aGc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416557	49416557	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	195	356	0	ENST00000301067.7:c.16154C>G	p.Ser5385Ter	p.S5385*	ENST00000301067	NM_003482.3	5385	tCa/tGa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425755	49425755	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	282	487	0	ENST00000301067.7:c.12733G>T	p.Glu4245Ter	p.E4245*	ENST00000301067	NM_003482.3	4245	Gag/Tag																																																																														
LATS2	0	MSKCC	GRCh37	13	21562258	21562258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	373	598	0	ENST00000382592.4:c.1661G>T	p.Gly554Val	p.G554V	ENST00000382592	NM_014572.2	554	gGc/gTc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88690612	88690612	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	202	321	0	ENST00000360948.2:c.418A>T	p.Thr140Ser	p.T140S	ENST00000360948	NM_001012338.2	140	Acc/Tcc																																																																														
ACVR1	0	MSKCC	GRCh37	2	158626964	158626964	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	201	339	0	ENST00000263640.3:c.706A>G	p.Ile236Val	p.I236V	ENST00000263640	NM_001105.4	236	Atc/Gtc																																																																														
PMS1	0	MSKCC	GRCh37	2	190728598	190728599	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	234	432	1	ENST00000441310.2:c.1986_1987delinsTT	p.Leu662_Ala663delinsPheSer	p.L662_A663delinsFS	ENST00000441310	NM_000534.4	662	ttGGcc/ttTTcc																																																																														
BAP1	0	MSKCC	GRCh37	3	52436345	52436345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	294	411	0	ENST00000460680.1:c.2149C>T	p.Arg717Trp	p.R717W	ENST00000460680	NM_004656.3	717	Cgg/Tgg																																																																														
KIT	0	MSKCC	GRCh37	4	55561896	55561896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	128	199	0	ENST00000288135.5:c.286A>G	p.Thr96Ala	p.T96A	ENST00000288135	NM_000222.2	96	Acg/Gcg																																																																														
FAT1	0	MSKCC	GRCh37	4	187539912	187539912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	209	255	0	ENST00000441802.2:c.7828G>T	p.Ala2610Ser	p.A2610S	ENST00000441802	NM_005245.3	2610	Gct/Tct																																																																														
ROS1	0	MSKCC	GRCh37	6	117662752	117662752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	140	246	0	ENST00000368508.3:c.4713C>G	p.Asp1571Glu	p.D1571E	ENST00000368508	NM_002944.2	1571	gaC/gaG																																																																														
STAT3	0	MSKCC	GRCh37	17	40481581	40481581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	209	383	0	ENST00000264657.5:c.1224C>G	p.Phe408Leu	p.F408L	ENST00000264657	NM_139276.2	408	ttC/ttG																																																																														
DAXX	0	MSKCC	GRCh37	6	33289247	33289247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	117	369	1	ENST00000374542.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000374542	NM_001141970.1	102	tCg/tTg																																																																														
JAK1	0	MSKCC	GRCh37	1	65332548	65332548	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	75	197	0	ENST00000342505.4:c.990+1G>A		p.X330_splice	ENST00000342505	NM_002227.2	330																																																																															
KDM5A	0	MSKCC	GRCh37	12	406246	406246	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	250	353	0	ENST00000399788.2:c.4195G>C	p.Glu1399Gln	p.E1399Q	ENST00000399788	NM_001042603.1	1399	Gag/Cag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917504	178917504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	62	286	0	ENST00000263967.3:c.379G>A	p.Glu127Lys	p.E127K	ENST00000263967	NM_006218.2	127	Gaa/Aaa																																																																														
JAK2	0	MSKCC	GRCh37	9	5123011	5123011	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	30	232	0	ENST00000381652.3:c.3067C>G	p.Pro1023Ala	p.P1023A	ENST00000381652	NM_004972.3	1023	Cca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	98	333	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	153	443	0	ENST00000269305.4:c.764T>A	p.Ile255Asn	p.I255N	ENST00000269305	NM_001126112.2	255	aTc/aAc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31374365	31374365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	52	420	0	ENST00000328111.2:c.364C>T	p.Arg122Cys	p.R122C	ENST00000328111	NM_006892.3	122	Cgt/Tgt																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111881339	111881340	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAT			P-0030750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	110	281	0	ENST00000393256.3:c.18_21dup	p.Val8Ter	p.V8*	ENST00000393256	NM_006538.4	6	tct/tcTGATt																																																																														
GSK3B	0	MSKCC	GRCh37	3	119634935	119634935	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	188	221	0	ENST00000316626.5:c.564G>C	p.Leu188Phe	p.L188F	ENST00000316626		188	ttG/ttC																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106522635	106522635	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	224	270	0	ENST00000359195.3:c.2612C>A	p.Ser871Ter	p.S871*	ENST00000359195	NM_002649.2	871	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0030753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	407	495	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	65	185	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																														
TBX3	0	MSKCC	GRCh37	12	115109888	115109888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	251	467	2	ENST00000257566.3:c.1990G>T	p.Ala664Ser	p.A664S	ENST00000257566	NM_016569.3	664	Gcg/Tcg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117789	70117789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	241	476	0	ENST00000245479.2:c.257G>A	p.Trp86Ter	p.W86*	ENST00000245479	NM_000346.3	86	tGg/tAg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185183595	185183595	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	141	313	0	ENST00000265026.3:c.1449C>G	p.Tyr483Ter	p.Y483*	ENST00000265026	NM_004721.4	483	taC/taG																																																																														
JAK1	0	MSKCC	GRCh37	1	65325871	65325873	+	missense_variant	Missense_Mutation	ONP	TGC	TGC	AAA			P-0030756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	236	411	1	ENST00000342505.4:c.1249_1251delinsTTT	p.Ala417Phe	p.A417F	ENST00000342505	NM_002227.2	417	GCA/TTT																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	220	458	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																														
TSC2	0	MSKCC	GRCh37	16	2137898	2137898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	291	530	1	ENST00000219476.3:c.5024C>T	p.Pro1675Leu	p.P1675L	ENST00000219476	NM_000548.3	1675	cCg/cTg																																																																														
MEN1	0	MSKCC	GRCh37	11	64574642	64574653	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTACTGACCTT	TCTACTGACCTT	-			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	227	438	0	ENST00000337652.1:c.837_839+9del		p.X279_splice	ENST00000337652	NM_130803.2	279																																																																															
ARID2	0	MSKCC	GRCh37	12	46244586	46244586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	207	374	0	ENST00000334344.6:c.2680C>G	p.Gln894Glu	p.Q894E	ENST00000334344	NM_152641.2	894	Cag/Gag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3820810	3820810	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	338	722	0	ENST00000262367.5:c.2641C>T	p.Gln881Ter	p.Q881*	ENST00000262367	NM_004380.2	881	Cag/Tag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980596	1980596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	225	446	0	ENST00000382891.5:c.4058G>A	p.Arg1353Gln	p.R1353Q	ENST00000382891	NM_133335.3	1353	cGg/cAg																																																																														
PLK2	0	MSKCC	GRCh37	5	57750823	57750823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	159	328	0	ENST00000274289.3:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000274289	NM_006622.3	594	gAt/gGt																																																																														
DAXX	0	MSKCC	GRCh37	6	33288796	33288805	+	frameshift_variant	Frame_Shift_Del	DEL	GACACGGCCG	GACACGGCCG	-			P-0030778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	134	312	0	ENST00000374542.5:c.747_756del	p.Gly250Ter	p.G250*	ENST00000374542	NM_001141970.1	249	acCGGCCGTGTC/ac																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670847	134670847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002375-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	201	435	0	ENST00000398015.3:c.758G>T	p.Cys253Phe	p.C253F	ENST00000398015	NM_004441.4	253	tGc/tTc																																																																														
WT1	0	MSKCC	GRCh37	11	32456348	32456348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002375-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			821	92	628	0	ENST00000332351.3:c.544C>T	p.Pro182Ser	p.P182S	ENST00000332351	NM_024426.4	182	Cct/Tct																																																																														
WT1	0	MSKCC	GRCh37	11	32456366	32456366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002375-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			800	88	631	0	ENST00000332351.3:c.526C>G	p.Arg176Gly	p.R176G	ENST00000332351	NM_024426.4	176	Cgc/Ggc																																																																														
AXIN1	0	MSKCC	GRCh37	16	347972	347972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002375-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	92	717	1	ENST00000262320.3:c.1534G>T	p.Gly512Trp	p.G512W	ENST00000262320	NM_003502.3	512	Ggg/Tgg																																																																														
WT1	0	MSKCC	GRCh37	11	32456679	32456680	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0002375-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	60	298	0	ENST00000332351.3:c.212_213delinsTA	p.Ser71Leu	p.S71L	ENST00000332351	NM_024426.4	71	tCC/tTA																																																																														
WT1	0	MSKCC	GRCh37	11	32456322	32456323	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0002375-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			850	92	610	2	ENST00000332351.3:c.569_570delinsTT	p.Ser190Phe	p.S190F	ENST00000332351	NM_024426.4	190	tCC/tTT																																																																														
SPEN	0	MSKCC	GRCh37	1	16256929	16256929	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002375-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			844	72	658	0	ENST00000375759.3:c.4194A>C	p.Leu1398Phe	p.L1398F	ENST00000375759	NM_015001.2	1398	ttA/ttC																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435401	18435401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002375-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	67	400	2	ENST00000266497.5:c.386C>G	p.Pro129Arg	p.P129R	ENST00000266497		129	cCc/cGc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9781296	9781296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002901-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	80	456	0	ENST00000377346.4:c.1801C>T	p.Arg601Trp	p.R601W	ENST00000377346	NM_005026.3	601	Cgg/Tgg																																																																														
FLT3	0	MSKCC	GRCh37	13	28608116	28608116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002901-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	75	591	1	ENST00000241453.7:c.1850G>T	p.Gly617Val	p.G617V	ENST00000241453	NM_004119.2	617	gGa/gTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	268	401	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0024677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	188	324	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																														
MET	0	MSKCC	GRCh37	7	116417463	116417463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	231	213	1	ENST00000397752.3:c.3280C>T	p.His1094Tyr	p.H1094Y	ENST00000397752	NM_000245.2	1094	Cat/Tat																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281360	49281360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201503697		P-0024677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	298	517	0	ENST00000282018.3:c.407G>A	p.Arg136His	p.R136H	ENST00000282018	NM_020377.2	136	cGt/cAt																																																																														
AKT3	0	MSKCC	GRCh37	1	243800946	243800946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	90	308	0	ENST00000263826.5:c.528G>C	p.Met176Ile	p.M176I	ENST00000263826	NM_005465.4	176	atG/atC																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643678	52643678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	83	334	1	ENST00000394830.3:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000394830	NM_018313.4	740	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	90	574	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMO	0	MSKCC	GRCh37	7	128829039	128829040	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0030700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	15	24	0	ENST00000249373.3:c.67_69dupCTG	p.Leu23dup	p.L23dup	ENST00000249373	NM_005631.4	23	ggg/ggGCTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	139	493	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
RAD54L	0	MSKCC	GRCh37	1	46739340	46739340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	80	474	0	ENST00000371975.4:c.1531C>T	p.Arg511Cys	p.R511C	ENST00000371975	NM_003579.3	511	Cgt/Tgt																																																																														
SETD2	0	MSKCC	GRCh37	3	47165073	47165073	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	64	337	0	ENST00000409792.3:c.1053T>G	p.Phe351Leu	p.F351L	ENST00000409792	NM_014159.6	351	ttT/ttG																																																																														
FAT1	0	MSKCC	GRCh37	4	187541447	187541447	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	81	525	0	ENST00000441802.2:c.6293A>T	p.His2098Leu	p.H2098L	ENST00000441802	NM_005245.3	2098	cAt/cTt																																																																														
STAG2	0	MSKCC	GRCh37	X	123217400	123217400	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0030703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	147	362	0	ENST00000218089.9:c.3053+1G>T		p.X1018_splice	ENST00000218089	NM_001042749.1	1018																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0030707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	138	552	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
MTOR	0	MSKCC	GRCh37	1	11182148	11182148	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	139	549	0	ENST00000361445.4:c.6698A>T	p.Asn2233Ile	p.N2233I	ENST00000361445	NM_004958.3	2233	aAc/aTc																																																																														
RET	0	MSKCC	GRCh37	10	43610129	43610129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141185224		P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	67	623	0	ENST00000355710.3:c.2081G>A	p.Arg694Gln	p.R694Q	ENST00000355710	NM_020975.4	694	cGg/cAg																																																																														
SDHD	0	MSKCC	GRCh37	11	111959708	111959708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	107	432	0	ENST00000375549.3:c.287C>T	p.Ala96Val	p.A96V	ENST00000375549	NM_003002.3	96	gCt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	167	452	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434465	49434467	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	100	789	0	ENST00000301067.7:c.7086_7088del	p.Pro2363del	p.P2363del	ENST00000301067	NM_003482.3	2362	ccTCCa/cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	148	704	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600005	10600005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	145	605	0	ENST00000171111.5:c.1571G>T	p.Gly524Val	p.G524V	ENST00000171111	NM_203500.1	524	gGc/gTc																																																																														
CARM1	0	MSKCC	GRCh37	19	11024624	11024625	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	87	534	0	ENST00000327064.4:c.743_744del	p.Pro248ArgfsTer43	p.P248Rfs*43	ENST00000327064	NM_199141.1	247	ctCCcc/ctcc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29130579	29130579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	65	536	0	ENST00000328354.6:c.131G>T	p.Ser44Ile	p.S44I	ENST00000328354	NM_007194.3	44	aGc/aTc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670844	134670844	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	49	423	0	ENST00000398015.3:c.755G>C	p.Arg252Pro	p.R252P	ENST00000398015	NM_004441.4	252	cGa/cCa																																																																														
TET2	0	MSKCC	GRCh37	4	106155631	106155631	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	79	468	0	ENST00000380013.4:c.532G>T	p.Glu178Ter	p.E178*	ENST00000380013	NM_001127208.2	178	Gag/Tag																																																																														
TERT	0	MSKCC	GRCh37	5	1258758	1258758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	124	581	1	ENST00000310581.5:c.2987C>A	p.Thr996Lys	p.T996K	ENST00000310581	NM_198253.2	996	aCg/aAg																																																																														
MSH3	0	MSKCC	GRCh37	5	79966126	79966126	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	69	419	1	ENST00000265081.6:c.790G>T	p.Glu264Ter	p.E264*	ENST00000265081	NM_002439.4	264	Gag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099054	157099226	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	CGAACTCAACATGGCCCATAACGCGGGCGCCGCGGCCGCCGCCGGCACCCACAGCGCCAAGAGCGGCGGCTCCGAGGCGGCTCTCAAGGAGGGTGGAAGCGCCGCCGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGGCATCCTCTTCCTCCTCGTCGGGCC	CGAACTCAACATGGCCCATAACGCGGGCGCCGCGGCCGCCGCCGGCACCCACAGCGCCAAGAGCGGCGGCTCCGAGGCGGCTCTCAAGGAGGGTGGAAGCGCCGCCGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGGCATCCTCTTCCTCCTCGTCGGGCC	-			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	151	18	0				ENST00000346085	NM_020732.3			1/20																																																																													
PTPRD	0	MSKCC	GRCh37	9	8376695	8376695	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	63	483	0	ENST00000356435.5:c.4418G>C	p.Gly1473Ala	p.G1473A	ENST00000356435		1473	gGc/gCc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521468	8521468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	55	626	0	ENST00000356435.5:c.770G>C	p.Cys257Ser	p.C257S	ENST00000356435		257	tGt/tCt																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900226	101900226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	53	451	0	ENST00000374994.4:c.660G>T	p.Trp220Cys	p.W220C	ENST00000374994	NM_004612.2	220	tgG/tgT																																																																														
TRAF2	0	MSKCC	GRCh37	9	139815530	139815530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	77	652	0	ENST00000247668.2:c.1001C>T	p.Ala334Val	p.A334V	ENST00000247668	NM_021138.3	334	gCg/gTg																																																																														
BCOR	0	MSKCC	GRCh37	X	39921616	39921616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	48	511	0	ENST00000378444.4:c.4204G>A	p.Glu1402Lys	p.E1402K	ENST00000378444	NM_001123385.1	1402	Gag/Aag																																																																														
STAG2	0	MSKCC	GRCh37	X	123210244	123210244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	45	517	0	ENST00000218089.9:c.2596G>T	p.Ala866Ser	p.A866S	ENST00000218089	NM_001042749.1	866	Gca/Tca																																																																														
STAG2	0	MSKCC	GRCh37	X	123220572	123220572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	53	533	0	ENST00000218089.9:c.3229C>A	p.Pro1077Thr	p.P1077T	ENST00000218089	NM_001042749.1	1077	Cca/Aca																																																																														
PTEN	0	MSKCC	GRCh37	10	89720805	89720808	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0030730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	41	288	0	ENST00000371953.3:c.956_959delCTTT	p.Thr319LysfsTer24	p.T319Kfs*24	ENST00000371953	NM_000314.4	319	aCTTTa/aa																																																																														
SPOP	0	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	61	673	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																														
TBX3	0	MSKCC	GRCh37	12	115112593	115112593	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	78	757	0	ENST00000257566.3:c.1147G>T	p.Glu383Ter	p.E383*	ENST00000257566	NM_016569.3	383	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	536	406	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SLX4	0	MSKCC	GRCh37	16	3658955	3658955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	635	476	0	ENST00000294008.3:c.11G>A	p.Ser4Asn	p.S4N	ENST00000294008	NM_032444.2	4	aGt/aAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	307	523	0	ENST00000269305.4:c.794T>A	p.Leu265Gln	p.L265Q	ENST00000269305	NM_001126112.2	265	cTg/cAg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1919962	1919962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	163	643	0	ENST00000382891.5:c.1022A>G	p.Lys341Arg	p.K341R	ENST00000382891	NM_133335.3	341	aAa/aGa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38959938	38959938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	14	379	0	ENST00000357387.3:c.1994C>A	p.Thr665Lys	p.T665K	ENST00000357387	NM_152756.3	665	aCa/aAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0030734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	33	666	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845477	72845477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	74	435	1	ENST00000268489.5:c.3863C>A	p.Thr1288Lys	p.T1288K	ENST00000268489	NM_006885.3	1288	aCg/aAg																																																																														
NF1	0	MSKCC	GRCh37	17	29483085	29483085	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	125	612	0	ENST00000358273.4:c.145T>A	p.Tyr49Asn	p.Y49N	ENST00000358273	NM_001042492.2	49	Tac/Aac																																																																														
CDK12	0	MSKCC	GRCh37	17	37682359	37682359	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	167	596	0	ENST00000447079.4:c.3550T>G	p.Ser1184Ala	p.S1184A	ENST00000447079	NM_015083.1	1184	Tct/Gct																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66511595	66511595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	153	411	0	ENST00000358598.2:c.55G>T	p.Glu19Ter	p.E19*	ENST00000358598	NM_212471.2	19	Gag/Tag																																																																														
DNMT1	0	MSKCC	GRCh37	19	10270434	10270434	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	213	602	0	ENST00000340748.4:c.1132C>G	p.Pro378Ala	p.P378A	ENST00000340748		378	Cca/Gca																																																																														
PAK7	0	MSKCC	GRCh37	20	9523361	9523361	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs149977525		P-0030734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	137	403	0	ENST00000353224.5:c.1876A>G	p.Ile626Val	p.I626V	ENST00000353224	NM_177990.2	626	Atc/Gtc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38967330	38967330	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	182	421	0	ENST00000357387.3:c.1152-1G>A		p.X384_splice	ENST00000357387	NM_152756.3	384																																																																															
RAD50	0	MSKCC	GRCh37	5	131911524	131911524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	120	503	0	ENST00000265335.6:c.269A>G	p.Asn90Ser	p.N90S	ENST00000265335		90	aAt/aGt																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27840048	27840048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	31	309	0	ENST00000328488.2:c.46G>T	p.Ala16Ser	p.A16S	ENST00000328488	NM_003533.2	16	Gcg/Tcg																																																																														
TEK	0	MSKCC	GRCh37	9	27205058	27205058	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	75	557	0	ENST00000380036.4:c.2359A>T	p.Asn787Tyr	p.N787Y	ENST00000380036	NM_000459.3	787	Aac/Tac																																																																														
PTCH1	0	MSKCC	GRCh37	9	98229429	98229429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	82	406	0	ENST00000331920.6:c.2529G>C	p.Met843Ile	p.M843I	ENST00000331920	NM_000264.3	843	atG/atC																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0030736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	71	428	1	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	221	656	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
MED12	0	MSKCC	GRCh37	X	70356171	70356171	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	144	410	0	ENST00000374080.3:c.5066A>G	p.Asp1689Gly	p.D1689G	ENST00000374080		1689	gAt/gGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	172	505	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	127	238	0				ENST00000310581	NM_198253.2																																																																																
KMT2A	0	MSKCC	GRCh37	11	118359421	118359421	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	150	612	0	ENST00000534358.1:c.4425T>G	p.Cys1475Trp	p.C1475W	ENST00000534358	NM_005933.3	1475	tgT/tgG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	167	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0030768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	270	637	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0030768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	25	396	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175648	112175648	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	110	332	0	ENST00000257430.4:c.4358delC	p.Pro1453LeufsTer20	p.P1453Lfs*20	ENST00000257430	NM_000038.5	1453	Cct/ct																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67198843	67198843	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	42	331	0	ENST00000312629.5:c.314A>C	p.Lys105Thr	p.K105T	ENST00000312629	NM_003952.2	105	aAa/aCa																																																																														
ATRX	0	MSKCC	GRCh37	X	76939330	76939330	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	171	310	0	ENST00000373344.5:c.1418A>C	p.His473Pro	p.H473P	ENST00000373344	NM_000489.3	473	cAc/cCc																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	103	426	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	109	534	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575675	48575676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	77	381	0	ENST00000342988.3:c.437dup	p.Leu146PhefsTer6	p.L146Ffs*6	ENST00000342988	NM_005359.5	145	-/T																																																																														
CIC	0	MSKCC	GRCh37	19	42799021	42799021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	309	768	0	ENST00000575354.2:c.4505C>T	p.Pro1502Leu	p.P1502L	ENST00000575354	NM_015125.3	1502	cCc/cTc																																																																														
CIC	0	MSKCC	GRCh37	19	42799306	42799306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	115	413	1	ENST00000575354.2:c.4790C>T	p.Pro1597Leu	p.P1597L	ENST00000575354	NM_015125.3	1597	cCa/cTa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971155	21971156	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	107	302	0	ENST00000304494.5:c.202_203delinsT	p.Ala68TrpfsTer78	p.A68Wfs*78	ENST00000304494	NM_000077.4	68	GCg/Tg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971155	21971156	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	107	302	0	ENST00000304494.5:c.202_203delinsT	p.Ala68TrpfsTer78	p.A68Wfs*78	ENST00000304494	NM_000077.4	68	GCg/Tg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971155	21971156	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0030773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	107	302	0	ENST00000304494.5:c.202_203delinsT	p.Ala68TrpfsTer78	p.A68Wfs*78	ENST00000304494	NM_000077.4	68	GCg/Tg																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	118	334	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0030775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	451	548	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	98	258	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0030775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	169	281	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0030779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	513	663	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907246	32907252	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTTTG	CTGTTTG	-			P-0030779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	162	367	0	ENST00000380152.3:c.1633_1639del	p.Val545HisfsTer11	p.V545Hfs*11	ENST00000380152		544	aCTGTTTGc/ac																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911147	29911147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	213	451	0	ENST00000376809.5:c.446C>A	p.Ala149Asp	p.A149D	ENST00000376809	NM_002116.7	149	gCc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	54	422	0	ENST00000269305.4:c.747G>C	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agC																																																																														
ATRX	0	MSKCC	GRCh37	X	76938911	76938911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	70	497	0	ENST00000373344.5:c.1837G>T	p.Asp613Tyr	p.D613Y	ENST00000373344	NM_000489.3	613	Gat/Tat																																																																														
KIT	0	MSKCC	GRCh37	4	55599332	55599332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	114	302	0	ENST00000288135.5:c.2458G>T	p.Asp820Tyr	p.D820Y	ENST00000288135	NM_000222.2	820	Gat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015040-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	231	351	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0015040-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	273	389	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																														
MET	0	MSKCC	GRCh37	7	116339864	116339864	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015040-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	293	369	0	ENST00000397752.3:c.726A>T	p.Arg242Ser	p.R242S	ENST00000397752	NM_000245.2	242	agA/agT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020836-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	108	444	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266611	198266611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020836-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	196	404	0	ENST00000335508.6:c.2225G>A	p.Gly742Asp	p.G742D	ENST00000335508	NM_012433.2	742	gGt/gAt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44937664	44937665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020836-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			109	75	240	0	ENST00000377967.4:c.2855dup	p.Phe953LeufsTer26	p.F953Lfs*26	ENST00000377967	NM_021140.2	951	gct/gcTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023372	27023373	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020836-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			146	128	192	0	ENST00000324856.7:c.480dup	p.Val161ArgfsTer239	p.V161Rfs*239	ENST00000324856	NM_006015.4	160	gcc/gCcc																																																																														
AXIN1	0	MSKCC	GRCh37	16	396319	396319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020836-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	126	673	0	ENST00000262320.3:c.707G>A	p.Gly236Glu	p.G236E	ENST00000262320	NM_003502.3	236	gGa/gAa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781192	3781192	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020836-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	118	509	0	ENST00000262367.5:c.5172+1G>A		p.X1724_splice	ENST00000262367	NM_004380.2	1724																																																																															
ARID1A	0	MSKCC	GRCh37	1	27087513	27087513	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	199	603	0	ENST00000324856.7:c.2090del	p.Pro697ArgfsTer45	p.P697Rfs*45	ENST00000324856	NM_006015.4	696	tCc/tc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089581	27089581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	65	591	0	ENST00000324856.7:c.2537G>A	p.Gly846Asp	p.G846D	ENST00000324856	NM_006015.4	846	gGc/gAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092747	27092747	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	93	417	0	ENST00000324856.7:c.2768T>C	p.Met923Thr	p.M923T	ENST00000324856	NM_006015.4	923	aTg/aCg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097737	27097737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	71	567	1	ENST00000324856.7:c.3326G>A	p.Arg1109Gln	p.R1109Q	ENST00000324856	NM_006015.4	1109	cGg/cAg																																																																														
SESN2	0	MSKCC	GRCh37	1	28598375	28598375	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148862241		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	67	522	0	ENST00000253063.3:c.347C>T	p.Ala116Val	p.A116V	ENST00000253063	NM_031459.4	116	gCc/gTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	36	366	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	23	295	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	59	248	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	99	442	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
MEN1	0	MSKCC	GRCh37	11	64571820	64571820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	203	745	0	ENST00000337652.1:c.1834C>T	p.Arg612Cys	p.R612C	ENST00000337652	NM_130803.2	612	Cgc/Tgc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948205	71948205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	113	775	0	ENST00000298229.2:c.2917G>T	p.Ala973Ser	p.A973S	ENST00000298229	NM_001567.3	973	Gcg/Tcg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118342633	118342634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	21	325	0	ENST00000534358.1:c.766dup	p.Ile256AsnfsTer2	p.I256Nfs*2	ENST00000534358	NM_005933.3	253	-/A																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	61	572	1	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
KDM5A	0	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	51	371	4	ENST00000399788.2:c.3597dupA	p.Gly1200ArgfsTer7	p.G1200Rfs*7	ENST00000399788	NM_001042603.1	1199	-/A																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856439	111856439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	110	182	0	ENST00000341259.2:c.490G>A	p.Gly164Arg	p.G164R	ENST00000341259	NM_005475.2	164	Ggg/Agg																																																																														
SETD8	0	MSKCC	GRCh37	12	123880971	123880971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	38	290	1	ENST00000330479.4:c.589G>A	p.Glu197Lys	p.E197K	ENST00000330479	NM_020382.3	197	Gag/Aag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	37	479	2	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281629	49281629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	164	633	0	ENST00000282018.3:c.676C>T	p.Arg226Trp	p.R226W	ENST00000282018	NM_020377.2	226	Cgg/Tgg																																																																														
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	116	489	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
TSC2	0	MSKCC	GRCh37	16	2127678	2127678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	94	583	1	ENST00000219476.3:c.2917G>A	p.Glu973Lys	p.E973K	ENST00000219476	NM_000548.3	973	Gag/Aag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857428	9857428	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	41	381	0	ENST00000330684.3:c.3973del	p.Tyr1325ThrfsTer72	p.Y1325Tfs*72	ENST00000330684	NM_001134407.1	1325	Tac/ac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993832	72993832	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	84	359	1	ENST00000268489.5:c.213del	p.Ser72ProfsTer37	p.S72Pfs*37	ENST00000268489	NM_006885.3	71	ccC/cc																																																																														
FANCA	0	MSKCC	GRCh37	16	89805672	89805672	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17227396		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	128	538	0	ENST00000389301.3:c.4036G>A	p.Ala1346Thr	p.A1346T	ENST00000389301	NM_000135.2	1346	Gcg/Acg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	93	427	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
FLCN	0	MSKCC	GRCh37	17	17127424	17127424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	179	551	1	ENST00000285071.4:c.430G>A	p.Gly144Arg	p.G144R	ENST00000285071	NM_144997.5	144	Gga/Aga																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	189	736	9	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	150	510	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
SOX9	0	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	82	452	3	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575096	48575096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	28	345	0	ENST00000342988.3:c.290G>A	p.Arg97His	p.R97H	ENST00000342988	NM_005359.5	97	cGt/cAt																																																																														
TCF3	0	MSKCC	GRCh37	19	1623966	1623966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	167	577	0	ENST00000344749.5:c.533C>T	p.Pro178Leu	p.P178L	ENST00000344749	NM_001136139.2	178	cCg/cTg																																																																														
MSH6	0	MSKCC	GRCh37	2	48030669	48030669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	27	427	1	ENST00000234420.5:c.3283C>T	p.Arg1095Cys	p.R1095C	ENST00000234420	NM_000179.2	1095	Cgc/Tgc																																																																														
BARD1	0	MSKCC	GRCh37	2	215633966	215633966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	38	490	0	ENST00000260947.4:c.1385G>T	p.Trp462Leu	p.W462L	ENST00000260947	NM_000465.2	462	tGg/tTg																																																																														
U2AF1	0	MSKCC	GRCh37	21	44520605	44520605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	105	338	0	ENST00000291552.4:c.157C>T	p.Arg53Cys	p.R53C	ENST00000291552	NM_006758.2	53	Cgt/Tgt																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	145	648	11	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	59	404	1	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
BCL6	0	MSKCC	GRCh37	3	187447061	187447061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	105	655	0	ENST00000232014.4:c.1132T>C	p.Tyr378His	p.Y378H	ENST00000232014	NM_001130845.1	378	Tac/Cac																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280142	66280142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	34	281	1	ENST00000273854.3:c.1547C>T	p.Thr516Met	p.T516M	ENST00000273854	NM_004439.5	516	aCg/aTg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467629	66467629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	64	358	0	ENST00000273854.3:c.640T>C	p.Phe214Leu	p.F214L	ENST00000273854	NM_004439.5	214	Ttt/Ctt																																																																														
TET2	0	MSKCC	GRCh37	4	106193806	106193807	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	40	318	0	ENST00000380013.4:c.4271_4272del	p.Ser1424Ter	p.S1424*	ENST00000380013	NM_001127208.2	1423	gTC/g																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	68	313	6	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
PLK2	0	MSKCC	GRCh37	5	57755776	57755776	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	23	469	0	ENST00000274289.3:c.11del	p.Leu4CysfsTer96	p.L4Cfs*96	ENST00000274289	NM_006622.3	4	tTg/tg																																																																														
RASA1	0	MSKCC	GRCh37	5	86564366	86564366	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	95	337	0	ENST00000274376.6:c.98T>C	p.Val33Ala	p.V33A	ENST00000274376	NM_002890.2	33	gTg/gCg																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	60	360	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	27	231	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
HIST1H3A	0	MSKCC	GRCh37	6	26020848	26020848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	57	374	0	ENST00000357647.3:c.131C>A	p.Pro44Gln	p.P44Q	ENST00000357647	NM_003529.2	44	cCg/cAg																																																																														
TAP2	0	MSKCC	GRCh37	6	32798201	32798201	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	179	598	0	ENST00000374899.4:c.1478T>C	p.Leu493Pro	p.L493P	ENST00000374899	NM_018833.2	493	cTa/cCa																																																																														
TAP2	0	MSKCC	GRCh37	6	32800223	32800225	+	inframe_deletion	In_Frame_Del	DEL	CCC	CCC	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	36	368	0	ENST00000374899.4:c.1157_1159del	p.Gly386del	p.G386del	ENST00000374899	NM_018833.2	386	gGGGtg/gtg																																																																														
TAP2	0	MSKCC	GRCh37	6	32803041	32803041	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	80	618	0	ENST00000374899.4:c.835del	p.Val279TrpfsTer26	p.V279Wfs*26	ENST00000374899	NM_018833.2	279	Gtg/tg																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	251	673	2	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100260	157100260	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	45	103	0	ENST00000346085.5:c.1202del	p.Gly401AlafsTer29	p.G401Afs*29	ENST00000346085	NM_020732.3	399	gcG/gc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	129	564	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
PMS2	0	MSKCC	GRCh37	7	6026514	6026514	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	28	572	0	ENST00000265849.7:c.1882C>T	p.Arg628Ter	p.R628*	ENST00000265849	NM_000535.5	628	Cga/Tga																																																																														
EGFR	0	MSKCC	GRCh37	7	55240762	55240762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	168	689	0	ENST00000275493.2:c.2006G>A	p.Arg669Gln	p.R669Q	ENST00000275493	NM_005228.3	669	cGa/cAa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146944	38146945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	141	762	1	ENST00000317025.8:c.3197dup	p.Asn1066LysfsTer14	p.N1066Kfs*14	ENST00000317025	NM_023034.1	1066	aac/aaAc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740379	145740379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	196	768	1	ENST00000428558.2:c.1561C>T	p.Arg521Trp	p.R521W	ENST00000428558	NM_004260.3	521	Cgg/Tgg																																																																														
ABL1	0	MSKCC	GRCh37	9	133760790	133760790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	72	530	0	ENST00000318560.5:c.3113C>A	p.Ala1038Glu	p.A1038E	ENST00000318560	NM_005157.4	1038	gCg/gAg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	86	475	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
STAG2	0	MSKCC	GRCh37	X	123215320	123215320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	95	504	1	ENST00000218089.9:c.2866G>A	p.Ala956Thr	p.A956T	ENST00000218089	NM_001042749.1	956	Gct/Act																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0030637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	42	288	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0030637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	11	291	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	29	480	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716326	52716326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	46	463	0	ENST00000322088.6:c.770G>C	p.Trp257Ser	p.W257S	ENST00000322088	NM_014225.5	257	tGg/tCg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71247403	71247403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	26	390	2	ENST00000318789.4:c.130G>A	p.Val44Met	p.V44M	ENST00000318789	NM_032682.5	44	Gtg/Atg																																																																														
RASA1	0	MSKCC	GRCh37	5	86564794	86564798	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCC	CCTCC	-			P-0030637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	36	604	0	ENST00000274376.6:c.526_530del	p.Pro176AsnfsTer2	p.P176Nfs*2	ENST00000274376	NM_002890.2	176	CCTCCa/a																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	52	347	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	8	412	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
APC	0	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	17	357	0	ENST00000257430.4:c.2544dupA	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																														
TET1	0	MSKCC	GRCh37	10	70333991	70333993	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	18	303	0	ENST00000373644.4:c.1902_1904del	p.Val635del	p.V635del	ENST00000373644	NM_030625.2	632	tcTGTt/tct																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508284	106508284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	25	302	0	ENST00000359195.3:c.278C>T	p.Pro93Leu	p.P93L	ENST00000359195	NM_002649.2	93	cCg/cTg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604763	48604763	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	99	407	0	ENST00000342988.3:c.1586del	p.Leu529TyrfsTer8	p.L529Yfs*8	ENST00000342988	NM_005359.5	529	Tta/ta																																																																														
KRAS	0	MSKCC	GRCh37	12	25398283	25398284	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCAGCT			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	84	431	0	ENST00000256078.4:c.30_35dup	p.Ala11_Gly12dup	p.A11_G12dup	ENST00000256078	NM_033360.2	11	ggt/ggAGCTGGt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670721	134670721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	45	474	1	ENST00000398015.3:c.632C>A	p.Thr211Lys	p.T211K	ENST00000398015	NM_004441.4	211	aCa/aAa																																																																														
ASXL1	0	MSKCC	GRCh37	20	30946636	30946636	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	44	129	1	ENST00000375687.4:c.57+1G>A		p.X19_splice	ENST00000375687	NM_015338.5	19																																																																															
RAD50	0	MSKCC	GRCh37	5	131939081	131939081	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	33	505	0	ENST00000265335.6:c.2297A>T	p.Asn766Ile	p.N766I	ENST00000265335		766	aAc/aTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	102	472	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	18	285	0	ENST00000263967.3:c.1033A>T	p.Asn345Tyr	p.N345Y	ENST00000263967	NM_006218.2	345	Aat/Tat																																																																														
LATS2	0	MSKCC	GRCh37	13	21620061	21620359	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CTGAACCGAAGACTTGGATGGCTGTTTTAACCCCTCACGAATCTCTTGCAGTCGCTGCCGGCTATTTCCAGAATAAGTCGTGGCAGGAAAAGTCTTTGGCCTCATTGTTAGTCCAGTTTCCTTTTACCATAAATACAATCTTCTTAAAGTGTTTTATTATTTAAAAAAAAAAACTGTCAATAGTATCAGTTTGTTGTAAACATACTTTCAAAATAATTTCCTTTTGAAAATGTTCTTTCCTTCCATTTTTGTAGTTCCTATAGAGAACCTAAAATTTTCCAAAGTCTTCATTTTGAAGA	CTGAACCGAAGACTTGGATGGCTGTTTTAACCCCTCACGAATCTCTTGCAGTCGCTGCCGGCTATTTCCAGAATAAGTCGTGGCAGGAAAAGTCTTTGGCCTCATTGTTAGTCCAGTTTCCTTTTACCATAAATACAATCTTCTTAAAGTGTTTTATTATTTAAAAAAAAAAACTGTCAATAGTATCAGTTTGTTGTAAACATACTTTCAAAATAATTTCCTTTTGAAAATGTTCTTTCCTTCCATTTTTGTAGTTCCTATAGAGAACCTAAAATTTTCCAAAGTCTTCATTTTGAAGA	-			P-0030675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	232	442	0	ENST00000382592.4:c.-194_105del		p.*65*	ENST00000382592	NM_014572.2	65																																																																															
FOXA1	0	MSKCC	GRCh37	14	38060688	38060688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	95	493	0	ENST00000250448.2:c.1301C>T	p.Pro434Leu	p.P434L	ENST00000250448	NM_004496.3	434	cCc/cTc																																																																														
MSH6	0	MSKCC	GRCh37	2	48027997	48027997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	47	241	0	ENST00000234420.5:c.2875C>T	p.Arg959Cys	p.R959C	ENST00000234420	NM_000179.2	959	Cgc/Tgc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600016	10600019	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0030683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	220	716	0	ENST00000171111.5:c.1557_1560delCTAT	p.Ile519MetfsTer12	p.I519Mfs*12	ENST00000171111	NM_203500.1	519	atCTAT/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	67	504	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FUBP1	0	MSKCC	GRCh37	1	78433847	78433848	+	splice_donor_variant	Splice_Site	DEL	AC	AC	-			P-0030684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	28	404	0	ENST00000370768.2:c.250+1_250+2del		p.X84_splice	ENST00000370768	NM_003902.3	84																																																																															
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	66	608	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573563	48573564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	43	391	0	ENST00000342988.3:c.153dupA	p.Asp52ArgfsTer2	p.D52Rfs*2	ENST00000342988	NM_005359.5	49	-/A																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0030685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	75	449	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0030685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	31	558	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RARA	0	MSKCC	GRCh37	17	38510612	38510612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	103	498	0	ENST00000254066.5:c.866G>A	p.Gly289Glu	p.G289E	ENST00000254066	NM_000964.3	289	gGg/gAg																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324665	31324665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	36	238	1	ENST00000412585.2:c.143C>T	p.Ser48Leu	p.S48L	ENST00000412585	NM_005514.6	48	tCa/tTa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575108	48575153	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCTGATCTTCACAAAAATGAACTAAAACATGTTAAATATTGTCA	GGCCTGATCTTCACAAAAATGAACTAAAACATGTTAAATATTGTCA	-			P-0030685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	30	342	0	ENST00000342988.3:c.303_348del	p.Trp101CysfsTer6	p.W101Cfs*6	ENST00000342988	NM_005359.5	101	tGGCCTGATCTTCACAAAAATGAACTAAAACATGTTAAATATTGTCAg/tg																																																																														
MET	0	MSKCC	GRCh37	7	116409842	116409842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	33	262	0	ENST00000397752.3:c.2727A>G	p.Ile909Met	p.I909M	ENST00000397752	NM_000245.2	909	atA/atG																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	85	476	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463247	25463247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	86	509	1	ENST00000264709.3:c.2246G>A	p.Arg749His	p.R749H	ENST00000264709	NM_175629.2	749	cGc/cAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47044970	47044970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	89	594	0	ENST00000329236.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000329236	NM_001204466.1	688	Cgc/Tgc																																																																														
STK11	0	MSKCC	GRCh37	19	1220504	1220504	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0030689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	80	519	0	ENST00000326873.7:c.597G>C	p.Glu199Asp	p.E199D	ENST00000326873	NM_000455.4	199	gaG/gaC																																																																														
MET	0	MSKCC	GRCh37	7	116422152	116422152	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	38	484	0	ENST00000397752.3:c.3632+1G>A		p.X1211_splice	ENST00000397752	NM_000245.2	1211																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0030717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	386	480	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
BRAF	0	MSKCC	GRCh37	7	140487359	140487359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	231	693	0	ENST00000288602.6:c.1166G>A	p.Arg389His	p.R389H	ENST00000288602	NM_004333.4	389	cGt/cAt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151884478	151884478	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	47	461	0	ENST00000262189.6:c.4877A>C	p.Asn1626Thr	p.N1626T	ENST00000262189	NM_170606.2	1626	aAt/aCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	241	466	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	67	393	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CIC	0	MSKCC	GRCh37	19	42791797	42791797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	479	556	0	ENST00000575354.2:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000575354	NM_015125.3	228	cGg/cAg																																																																														
ERCC3	0	MSKCC	GRCh37	2	128046944	128046946	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0030721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	222	513	8	ENST00000285398.2:c.789_791del	p.Glu264del	p.E264del	ENST00000285398	NM_000122.1	263	gaAGAg/gag																																																																														
MGA	0	MSKCC	GRCh37	15	42052633	42052633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	126	420	0	ENST00000219905.7:c.7304G>A	p.Arg2435Gln	p.R2435Q	ENST00000219905	NM_001164273.1	2435	cGg/cAg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101194	41101194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	72	504	0	ENST00000373198.4:c.1162C>A	p.His388Asn	p.H388N	ENST00000373198	NM_133170.3	388	Cat/Aat																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	25	266	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578446	7578446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	63	594	0	ENST00000269305.4:c.484A>T	p.Ile162Phe	p.I162F	ENST00000269305	NM_001126112.2	162	Atc/Ttc																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	24	379	0	ENST00000244661.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000244661	NM_003537.3	74	Gaa/Aaa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857250	9857250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	41	453	0	ENST00000330684.3:c.4151C>T	p.Ser1384Leu	p.S1384L	ENST00000330684	NM_001134407.1	1384	tCg/tTg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602859	10602859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	65	778	1	ENST00000171111.5:c.719G>T	p.Arg240Leu	p.R240L	ENST00000171111	NM_203500.1	240	cGc/cTc																																																																														
BRD4	0	MSKCC	GRCh37	19	15376352	15376352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	90	824	1	ENST00000263377.2:c.662C>T	p.Thr221Met	p.T221M	ENST00000263377	NM_058243.2	221	aCg/aTg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012340	176012340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	46	396	0	ENST00000367669.3:c.1594G>T	p.Gly532Cys	p.G532C	ENST00000367669	NM_022457.5	532	Ggt/Tgt																																																																														
TET1	0	MSKCC	GRCh37	10	70450603	70450603	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	44	440	0	ENST00000373644.4:c.5443G>T	p.Glu1815Ter	p.E1815*	ENST00000373644	NM_030625.2	1815	Gaa/Taa																																																																														
WT1	0	MSKCC	GRCh37	11	32449523	32449524	+	missense_variant	Missense_Mutation	DNP	AG	AG	CT			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	52	604	1	ENST00000332351.3:c.850_851inv	p.Leu284Arg	p.L284R	ENST00000332351	NM_024426.4	284	CTg/AGg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71949170	71949171	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	56	726	0	ENST00000298229.2:c.3638_3639del	p.Tyr1213Ter	p.Y1213*	ENST00000298229	NM_001567.3	1213	TAt/t																																																																														
GLI1	0	MSKCC	GRCh37	12	57865095	57865095	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	64	753	1	ENST00000228682.2:c.2572C>T	p.Gln858Ter	p.Q858*	ENST00000228682	NM_005269.2	858	Caa/Taa																																																																														
MSI1	0	MSKCC	GRCh37	12	120785269	120785269	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	44	490	0	ENST00000257552.2:c.839C>G	p.Ala280Gly	p.A280G	ENST00000257552	NM_002442.3	280	gCg/gGg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32900402	32900402	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	31	361	0	ENST00000380152.3:c.499A>T	p.Thr167Ser	p.T167S	ENST00000380152		167	Aca/Tca																																																																														
B2M	0	MSKCC	GRCh37	15	45003736	45003752	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CGGGCCGAGATGTCTCG	CGGGCCGAGATGTCTCG	-			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	32	291	0	ENST00000558401.1:c.-8_9del		p.*3*	ENST00000558401	NM_004048.2	3																																																																															
ZFHX3	0	MSKCC	GRCh37	16	72828694	72828694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	56	464	0	ENST00000268489.5:c.7887C>G	p.Asn2629Lys	p.N2629K	ENST00000268489	NM_006885.3	2629	aaC/aaG																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091794	29091794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	55	508	0	ENST00000328354.6:c.1163C>T	p.Pro388Leu	p.P388L	ENST00000328354	NM_007194.3	388	cCc/cTc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143044568	143044568	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	21	291	0	ENST00000262992.4:c.1894C>A	p.Leu632Ile	p.L632I	ENST00000262992	NM_001101669.1	632	Ctt/Att																																																																														
MSH3	0	MSKCC	GRCh37	5	79965916	79965916	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	42	390	1	ENST00000265081.6:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000265081	NM_002439.4	194	Gac/Tac																																																																														
RAD50	0	MSKCC	GRCh37	5	131925496	131925496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	29	331	0	ENST00000265335.6:c.1419G>C	p.Arg473Ser	p.R473S	ENST00000265335		473	agG/agC																																																																														
MDC1	0	MSKCC	GRCh37	6	30672375	30672375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	99	563	0	ENST00000376406.3:c.4585A>G	p.Thr1529Ala	p.T1529A	ENST00000376406	NM_014641.2	1529	Aca/Gca																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188949	32188950	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	93	636	2	ENST00000375023.3:c.604_605delinsAA	p.Pro202Lys	p.P202K	ENST00000375023	NM_004557.3	202	CCa/AAa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468024	50468024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	35	391	0	ENST00000331340.3:c.1259C>A	p.Pro420Gln	p.P420Q	ENST00000331340	NM_006060.4	420	cCg/cAg																																																																														
PAX5	0	MSKCC	GRCh37	9	37015065	37015065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	31	483	0	ENST00000358127.4:c.339G>T	p.Glu113Asp	p.E113D	ENST00000358127	NM_001280556.1	113	gaG/gaT																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	378	601	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922321	178922321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	117	471	0	ENST00000263967.3:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000263967	NM_006218.2	364	Gga/Aga																																																																														
APC	0	MSKCC	GRCh37	5	112137082	112137082	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0030639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	254	314	0	ENST00000257430.4:c.834+2T>C		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																															
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	285	454	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
PGR	0	MSKCC	GRCh37	11	100922221	100922221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	315	474	0	ENST00000325455.5:c.2291G>T	p.Gly764Val	p.G764V	ENST00000325455	NM_001202474.3	764	gGa/gTa																																																																														
GLI1	0	MSKCC	GRCh37	12	57861791	57861791	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	151	468	0	ENST00000228682.2:c.1092del	p.Cys364Ter	p.C364*	ENST00000228682	NM_005269.2	364	tgT/tg																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870956	12870962	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCGAT	TTTCGAT	-			P-0030640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	137	311	0	ENST00000228872.4:c.187_193del	p.Asp63ArgfsTer6	p.D63Rfs*6	ENST00000228872	NM_004064.3	61	aaTTTCGAT/aa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943658	9943658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	62	511	1	ENST00000330684.3:c.1283C>T	p.Thr428Met	p.T428M	ENST00000330684	NM_001134407.1	428	aCg/aTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916663	178916663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	156	293	0	ENST00000263967.3:c.50C>A	p.Pro17His	p.P17H	ENST00000263967	NM_006218.2	17	cCc/cAc																																																																														
TEK	0	MSKCC	GRCh37	9	27212782	27212782	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	60	583	0	ENST00000380036.4:c.2764A>T	p.Thr922Ser	p.T922S	ENST00000380036	NM_000459.3	922	Acg/Tcg																																																																														
ROS1	0	MSKCC	GRCh37	6	117684026	117684026	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	93	286	0	ENST00000368508.3:c.3121C>A	p.Pro1041Thr	p.P1041T	ENST00000368508	NM_002944.2	1041	Cca/Aca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	107	245	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0030644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	102	435	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244233	153244233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	84	323	0	ENST00000281708.4:c.1924G>A	p.Asp642Asn	p.D642N	ENST00000281708	NM_033632.3	642	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0030651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	25	544	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	178	521	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	141	371	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0030657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	195	530	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
SOX9	0	MSKCC	GRCh37	17	70117790	70117790	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	289	587	0	ENST00000245479.2:c.258G>A	p.Trp86Ter	p.W86*	ENST00000245479	NM_000346.3	86	tgG/tgA																																																																														
AMER1	0	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	247	665	0	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																														
RECQL	0	MSKCC	GRCh37	12	21627910	21627910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	149	490	0	ENST00000421138.2:c.1220G>A	p.Arg407Gln	p.R407Q	ENST00000421138		407	cGa/cAa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	20	231	0	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138423304	138423304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	34	411	0	ENST00000289153.2:c.1562G>A	p.Ser521Asn	p.S521N	ENST00000289153	NM_006219.2	521	aGt/aAt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156841488	156841488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	14	547	0	ENST00000524377.1:c.791C>T	p.Thr264Met	p.T264M	ENST00000524377	NM_002529.3	264	aCg/aTg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435378	18435378	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	13	307	0	ENST00000266497.5:c.363T>A	p.Asn121Lys	p.N121K	ENST00000266497		121	aaT/aaA																																																																														
KDM6A	0	MSKCC	GRCh37	X	44913196	44913196	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	13	224	0	ENST00000377967.4:c.871G>T	p.Gly291Ter	p.G291*	ENST00000377967	NM_021140.2	291	Gga/Tga																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061243	38061243	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	173	395	0	ENST00000250448.2:c.746A>T	p.Asp249Val	p.D249V	ENST00000250448	NM_004496.3	249	gAc/gTc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748995	43748996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TACTAATGTCATCCCTGGTGTCTGTATCATCTCCC			P-0030625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	178	612	1	ENST00000382044.4:c.1776_1810dup	p.Ile604ArgfsTer14	p.I604Rfs*14	ENST00000382044	NM_001141980.1	604	att/aGGGAGATGATACAGACACCAGGGATGACATTAGTAtt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	326	404	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																														
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	210	209	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	120	170	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	179	336	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	47	213	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	36	280	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827892	40827892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	75	327	0	ENST00000373198.4:c.2536G>A	p.Val846Ile	p.V846I	ENST00000373198	NM_133170.3	846	Gtc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	68	403	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PGR	0	MSKCC	GRCh37	11	100998516	100998516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	74	411	2	ENST00000325455.5:c.1286C>T	p.Ala429Val	p.A429V	ENST00000325455	NM_001202474.3	429	gCg/gTg																																																																														
MSH6	0	MSKCC	GRCh37	2	48026322	48026322	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	52	357	0	ENST00000234420.5:c.1201del	p.Asp401IlefsTer10	p.D401Ifs*10	ENST00000234420	NM_000179.2	400	gaG/ga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972786	32972786	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	93	313	0	ENST00000380152.3:c.10136A>G	p.Tyr3379Cys	p.Y3379C	ENST00000380152		3379	tAt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578270	7578274	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCT	ATGCT	-			P-0030632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	276	415	0	ENST00000269305.4:c.575_579del	p.Gln192ProfsTer15	p.Q192Pfs*15	ENST00000269305	NM_001126112.2	192	cAGCAT/c																																																																														
PTEN	0	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	261	442	1	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			743	210	594	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
JAK1	0	MSKCC	GRCh37	1	65323437	65323437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	76	446	0	ENST00000342505.4:c.1360C>T	p.Arg454Trp	p.R454W	ENST00000342505	NM_002227.2	454	Cgg/Tgg																																																																														
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			740	163	507	4	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25523009	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			672	133	536	4	ENST00000264709.3:c.176delC	p.Pro59ArgfsTer13	p.P59Rfs*13	ENST00000264709	NM_175629.2	59	cCg/cg																																																																														
ATRX	0	MSKCC	GRCh37	X	76778785	76778787	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	208	291	2	ENST00000373344.5:c.6792_6794del	p.Glu2265del	p.E2265del	ENST00000373344	NM_000489.3	2264	gaAGAg/gag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			731	48	611	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			893	224	690	3	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986752	36986752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			73	70	71	0	ENST00000354822.5:c.937C>A	p.Gln313Lys	p.Q313K	ENST00000354822	NM_001079668.2	313	Caa/Aaa																																																																														
NF1	0	MSKCC	GRCh37	17	29670036	29670046	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGTATTTAT	GAAGTATTTAT	-			P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	273	396	0	ENST00000358273.4:c.7073_7083del	p.Glu2358GlyfsTer24	p.E2358Gfs*24	ENST00000358273	NM_001042492.2	2358	GAAGTATTTATg/g																																																																														
MLH1	0	MSKCC	GRCh37	3	37081734	37081734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	327	452	0	ENST00000231790.2:c.1616C>A	p.Ala539Asp	p.A539D	ENST00000231790	NM_000249.3	539	gCc/gAc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499355	89499355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	62	377	0	ENST00000336596.2:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000336596	NM_005233.5	842	cGa/cAa																																																																														
MDC1	0	MSKCC	GRCh37	6	30675662	30675662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			956	213	766	0	ENST00000376406.3:c.2694G>T	p.Glu898Asp	p.E898D	ENST00000376406	NM_014641.2	898	gaG/gaT																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099578	157099579	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	21	125	0	ENST00000346085.5:c.521dup	p.Pro177AlafsTer55	p.P177Afs*55	ENST00000346085	NM_020732.3	172	gac/gaCc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740708	145740708	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0030296-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			751	62	522	0	ENST00000428558.2:c.1390+2T>C		p.X464_splice	ENST00000428558	NM_004260.3	464																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	110	382	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	190	526	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	211	370	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912143	114912145	+	frameshift_variant	Frame_Shift_Ins	INS	AAG	AAG	CTTC			P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	212	477	0	ENST00000543371.1:c.1213_1215delinsCTTC	p.Lys405LeufsTer18	p.K405Lfs*18	ENST00000543371	NM_001198531.1	405	AAG/CTTC																																																																														
RRAS	0	MSKCC	GRCh37	19	50140166	50140166	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	212	446	0	ENST00000246792.3:c.259C>G	p.Gln87Glu	p.Q87E	ENST00000246792	NM_006270.3	87	Cag/Gag																																																																														
MED12	0	MSKCC	GRCh37	X	70343531	70343531	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	115	503	0	ENST00000374080.3:c.1705G>T	p.Val569Phe	p.V569F	ENST00000374080		569	Gtc/Ttc																																																																														
ATRX	0	MSKCC	GRCh37	X	76949404	76949404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	27	321	1	ENST00000373344.5:c.393G>T	p.Glu131Asp	p.E131D	ENST00000373344	NM_000489.3	131	gaG/gaT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0030543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	45	403	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0030584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	217	516	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
TET1	0	MSKCC	GRCh37	10	70446129	70446129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	40	361	0	ENST00000373644.4:c.5069G>A	p.Arg1690Gln	p.R1690Q	ENST00000373644	NM_030625.2	1690	cGa/cAa																																																																														
TEK	0	MSKCC	GRCh37	9	27228229	27228229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	35	525	1	ENST00000380036.4:c.3226C>T	p.Arg1076Trp	p.R1076W	ENST00000380036	NM_000459.3	1076	Cgg/Tgg																																																																														
RB1	0	MSKCC	GRCh37	13	49050932	49050933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	53	466	0	ENST00000267163.4:c.2622dup	p.Leu875ThrfsTer4	p.L875Tfs*4	ENST00000267163	NM_000321.2	872	-/A																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281793	49281793	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	87	585	0	ENST00000282018.3:c.840A>C	p.Lys280Asn	p.K280N	ENST00000282018	NM_020377.2	280	aaA/aaC																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730897	40730897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	156	511	1	ENST00000373198.4:c.3638G>A	p.Cys1213Tyr	p.C1213Y	ENST00000373198	NM_133170.3	1213	tGc/tAc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38963018	38963018	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	18	254	0	ENST00000357387.3:c.1526A>C	p.Asp509Ala	p.D509A	ENST00000357387	NM_152756.3	509	gAt/gCt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459840	149459840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	139	604	2	ENST00000286301.3:c.367G>A	p.Ala123Thr	p.A123T	ENST00000286301	NM_005211.3	123	Gca/Aca																																																																														
ESR1	0	MSKCC	GRCh37	6	152129388	152129388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	41	370	2	ENST00000206249.3:c.341C>T	p.Pro114Leu	p.P114L	ENST00000206249	NM_000125.3	114	cCg/cTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845190	151845190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	106	444	1	ENST00000262189.6:c.13822C>T	p.Arg4608Cys	p.R4608C	ENST00000262189	NM_170606.2	4608	Cgc/Tgc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8404619	8404619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	28	249	0	ENST00000356435.5:c.4128C>A	p.Asn1376Lys	p.N1376K	ENST00000356435		1376	aaC/aaA																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0030593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	201	299	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	149	540	0	ENST00000269305.4:c.833C>A	p.Pro278His	p.P278H	ENST00000269305	NM_001126112.2	278	cCt/cAt																																																																														
DICER1	0	MSKCC	GRCh37	14	95571423	95571423	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	22	191	0	ENST00000343455.3:c.3254T>A	p.Leu1085His	p.L1085H	ENST00000343455	NM_177438.2	1085	cTt/cAt																																																																														
SHQ1	0	MSKCC	GRCh37	3	72799820	72799820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	59	394	0	ENST00000325599.8:c.1349C>G	p.Ser450Cys	p.S450C	ENST00000325599	NM_018130.2	450	tCc/tGc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163726	32163726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	125	323	0	ENST00000375023.3:c.5500G>A	p.Gly1834Ser	p.G1834S	ENST00000375023	NM_004557.3	1834	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	99	578	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	177	708	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16041492	16041492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	59	253	0	ENST00000268712.3:c.1387G>T	p.Ala463Ser	p.A463S	ENST00000268712	NM_006311.3	463	Gca/Tca																																																																														
ALK	0	MSKCC	GRCh37	2	29606709	29606709	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	126	422	0	ENST00000389048.3:c.1171G>T	p.Gly391Ter	p.G391*	ENST00000389048	NM_004304.4	391	Gga/Tga																																																																														
MYD88	0	MSKCC	GRCh37	3	38182264	38182264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	111	426	0	ENST00000396334.3:c.700G>T	p.Val234Leu	p.V234L	ENST00000396334	NM_002468.4	234	Gtg/Ttg																																																																														
NSD1	0	MSKCC	GRCh37	5	176694608	176694608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	51	357	0	ENST00000439151.2:c.5192G>T	p.Arg1731Leu	p.R1731L	ENST00000439151	NM_022455.4	1731	cGt/cTt																																																																														
ROS1	0	MSKCC	GRCh37	6	117642438	117642438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	131	557	0	ENST00000368508.3:c.5761G>A	p.Ala1921Thr	p.A1921T	ENST00000368508	NM_002944.2	1921	Gcc/Acc																																																																														
HGF	0	MSKCC	GRCh37	7	81388034	81388034	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	74	434	0	ENST00000222390.5:c.341A>T	p.His114Leu	p.H114L	ENST00000222390	NM_000601.4	114	cAt/cTt																																																																														
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	150	288	0	ENST00000374080.3:c.3670C>G	p.Leu1224Val	p.L1224V	ENST00000374080		1224	Ctc/Gtc																																																																														
MGA	0	MSKCC	GRCh37	15	42041031	42041031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	146	505	0	ENST00000219905.7:c.5411del	p.Pro1804LeufsTer34	p.P1804Lfs*34	ENST00000219905	NM_001164273.1	1803	caC/ca																																																																														
GATA3	0	MSKCC	GRCh37	10	8115849	8115850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026026-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	96	537	0	ENST00000346208.3:c.1196dup	p.His399GlnfsTer108	p.H399Qfs*108	ENST00000346208		399	cac/cAac																																																																														
FAT1	0	MSKCC	GRCh37	4	187540336	187540336	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026026-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	198	466	0	ENST00000441802.2:c.7404del	p.Asp2469MetfsTer12	p.D2469Mfs*12	ENST00000441802	NM_005245.3	2468	tcT/tc																																																																														
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	170	528	0	ENST00000269305.4:c.578A>C	p.His193Pro	p.H193P	ENST00000269305	NM_001126112.2	193	cAt/cCt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957419	1957419	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	57	277	0	ENST00000382891.5:c.2523del		p.X841_splice	ENST00000382891	NM_133335.3	841																																																																															
NOTCH3	0	MSKCC	GRCh37	19	15285039	15285039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	102	523	0	ENST00000263388.2:c.4576C>A	p.Arg1526Ser	p.R1526S	ENST00000263388	NM_000435.2	1526	Cgt/Agt																																																																														
ARID2	0	MSKCC	GRCh37	12	46233268	46233268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			798	90	248	0	ENST00000334344.6:c.1487C>T	p.Ala496Val	p.A496V	ENST00000334344	NM_152641.2	496	gCa/gTa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438272	49438272	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	189	406	0	ENST00000301067.7:c.4997T>G	p.Leu1666Arg	p.L1666R	ENST00000301067	NM_003482.3	1666	cTg/cGg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445059	49445059	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			659	71	477	0	ENST00000301067.7:c.2407G>T	p.Glu803Ter	p.E803*	ENST00000301067	NM_003482.3	803	Gaa/Taa																																																																														
TBX3	0	MSKCC	GRCh37	12	115109822	115109822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	46	405	0	ENST00000257566.3:c.2056G>A	p.Val686Met	p.V686M	ENST00000257566	NM_016569.3	686	Gtg/Atg																																																																														
FLT3	0	MSKCC	GRCh37	13	28644651	28644651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			543	116	458	0	ENST00000241453.7:c.142G>C	p.Gly48Arg	p.G48R	ENST00000241453	NM_004119.2	48	Ggg/Cgg																																																																														
NF1	0	MSKCC	GRCh37	17	29667552	29667552	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	161	407	0	ENST00000358273.4:c.6951G>A	p.Trp2317Ter	p.W2317*	ENST00000358273	NM_001042492.2	2317	tgG/tgA																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276699	15276699	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	200	593	1	ENST00000263388.2:c.5566A>T	p.Lys1856Ter	p.K1856*	ENST00000263388	NM_000435.2	1856	Aag/Tag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52712615	52712615	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	90	226	0	ENST00000394830.3:c.139-2A>T		p.X47_splice	ENST00000394830	NM_018313.4	47																																																																															
TET2	0	MSKCC	GRCh37	4	106158482	106158482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	58	219	0	ENST00000380013.4:c.3383A>G	p.Tyr1128Cys	p.Y1128C	ENST00000380013	NM_001127208.2	1128	tAt/tGt																																																																														
FAT1	0	MSKCC	GRCh37	4	187557740	187557740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	83	211	0	ENST00000441802.2:c.3971C>T	p.Ser1324Leu	p.S1324L	ENST00000441802	NM_005245.3	1324	tCa/tTa																																																																														
RASA1	0	MSKCC	GRCh37	5	86627199	86627200	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	57	186	0	ENST00000274376.6:c.576dup	p.Glu193ArgfsTer18	p.E193Rfs*18	ENST00000274376	NM_002890.2	192	gaa/gAaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486253	8486253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	51	251	0	ENST00000356435.5:c.2564G>A	p.Gly855Asp	p.G855D	ENST00000356435		855	gGc/gAc																																																																														
CRLF2	0	MSKCC	GRCh37	X	1321407	1321407	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	52	277	0	ENST00000381566.1:c.350-2A>T		p.X117_splice	ENST00000381566		117																																																																															
DROSHA	0	MSKCC	GRCh37	5	31409198	31409198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	69	376	0	ENST00000344624.3:c.3819G>T	p.Arg1273Ser	p.R1273S	ENST00000344624		1273	agG/agT																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	265	633	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0030462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	183	532	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7978948	7978948	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	216	526	0	ENST00000319144.4:c.1619T>C	p.Ile540Thr	p.I540T	ENST00000319144	NM_001139.2	540	aTa/aCa																																																																														
AKT2	0	MSKCC	GRCh37	19	40761126	40761127	+	inframe_insertion	In_Frame_Ins	INS	-	-	TATGACAAAGGTGTTGGGTCGCGGCCTCTCGGTCTTCATCAGCTT			P-0030462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	140	746	0	ENST00000392038.2:c.225_226insAAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATA	p.Ile75_Arg76insLysLeuMetLysThrGluArgProArgProAsnThrPheValIle	p.I75_R76insKLMKTERPRPNTFVI	ENST00000392038	NM_001626.4	75	-/AAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATA																																																																														
RECQL4	0	MSKCC	GRCh37	8	145742998	145742998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	41	57	0	ENST00000428558.2:c.106G>A	p.Glu36Lys	p.E36K	ENST00000428558	NM_004260.3	36	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0030463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	167	331	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
AMER1	0	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	472	649	3	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7572971	7572971	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	282	413	0	ENST00000269305.4:c.1138del	p.His380IlefsTer42	p.H380Ifs*42	ENST00000269305	NM_001126112.2	380	Cat/at																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39637946	39637946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	138	490	0	ENST00000262039.4:c.2363G>A	p.Gly788Glu	p.G788E	ENST00000262039	NM_002647.2	788	gGg/gAg																																																																														
APC	0	MSKCC	GRCh37	5	112174154	112174154	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	67	405	0	ENST00000257430.4:c.2863G>T	p.Glu955Ter	p.E955*	ENST00000257430	NM_000038.5	955	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578250	7578250	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	50	689	0	ENST00000269305.4:c.599delA	p.Asn200IlefsTer47	p.N200Ifs*47	ENST00000269305	NM_001126112.2	200	aAt/at																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	178	212	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																																																														
WWTR1	0	MSKCC	GRCh37	3	149290752	149290752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	54	553	0	ENST00000360632.3:c.467G>A	p.Arg156Lys	p.R156K	ENST00000360632	NM_015472.4	156	aGg/aAg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467578	66467578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	31	427	1	ENST00000273854.3:c.691A>G	p.Lys231Glu	p.K231E	ENST00000273854	NM_004439.5	231	Aaa/Gaa																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165657	118165657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	126	437	0	ENST00000369448.3:c.167G>A	p.Arg56His	p.R56H	ENST00000369448	NM_017709.3	56	cGc/cAc																																																																														
TET1	0	MSKCC	GRCh37	10	70411644	70411644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	182	610	0	ENST00000373644.4:c.4318C>T	p.Leu1440Phe	p.L1440F	ENST00000373644	NM_030625.2	1440	Ctt/Ttt																																																																														
MED12	0	MSKCC	GRCh37	X	70340947	70340947	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	198	337	0	ENST00000374080.3:c.680A>G	p.Glu227Gly	p.E227G	ENST00000374080		227	gAg/gGg																																																																														
UPF1	0	MSKCC	GRCh37	19	18975016	18975016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	46	353	1	ENST00000262803.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000262803	NM_002911.3	938	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578467	7578476	+	protein_altering_variant	In_Frame_Del	DEL	TGCCGGGCGG	TGCCGGGCGG	CGCC			P-0030469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	88	597	2	ENST00000269305.4:c.454_463delinsGGCG	p.Pro152_Thr155delinsGlyAla	p.P152_T155delinsGA	ENST00000269305	NM_001126112.2	152	CCGCCCGGCAcc/GGCGcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	57	605	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	16	233	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	14	307	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435971	49435971	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	37	664	2	ENST00000301067.7:c.6010C>T	p.Gln2004Ter	p.Q2004*	ENST00000301067	NM_003482.3	2004	Cag/Tag																																																																														
TET2	0	MSKCC	GRCh37	4	106158499	106158501	+	frameshift_variant	Frame_Shift_Del	DEL	AGA	AGA	GT			P-0030472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	18	371	1	ENST00000380013.4:c.3400_3402delinsGT	p.Arg1134ValfsTer3	p.R1134Vfs*3	ENST00000380013	NM_001127208.2	1134	AGA/GT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	137	209	0				ENST00000310581	NM_198253.2																																																																																
MAP2K4	0	MSKCC	GRCh37	17	12032481	12032481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	167	301	0	ENST00000353533.5:c.917C>T	p.Pro306Leu	p.P306L	ENST00000353533	NM_003010.3	306	cCt/cTt																																																																														
STAT5B	0	MSKCC	GRCh37	17	40369299	40369299	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	195	415	0	ENST00000293328.3:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000293328	NM_012448.3	420	tCc/tTc																																																																														
CBL	0	MSKCC	GRCh37	11	119149241	119149241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	122	486	1	ENST00000264033.4:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000264033	NM_005188.3	417	Cct/Tct																																																																														
PAK7	0	MSKCC	GRCh37	20	9560883	9560883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	80	458	0	ENST00000353224.5:c.899G>A	p.Gly300Glu	p.G300E	ENST00000353224	NM_177990.2	300	gGa/gAa																																																																														
CDH1	0	MSKCC	GRCh37	16	68849500	68849501	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	124	493	2	ENST00000261769.5:c.1403_1404delinsTT	p.Thr468Ile	p.T468I	ENST00000261769	NM_004360.3	468	aCC/aTT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248538	212248538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	219	456	1	ENST00000342788.4:c.3729G>A	p.Trp1243Ter	p.W1243*	ENST00000342788	NM_005235.2	1243	tgG/tgA																																																																														
SMYD3	0	MSKCC	GRCh37	1	246091297	246091297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	325	486	2	ENST00000388985.4:c.638C>T	p.Ser213Leu	p.S213L	ENST00000388985		213	tCg/tTg																																																																														
ARID2	0	MSKCC	GRCh37	12	46246116	46246116	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	120	346	1	ENST00000334344.6:c.4210C>T	p.Gln1404Ter	p.Q1404*	ENST00000334344	NM_152641.2	1404	Caa/Taa																																																																														
JAK2	0	MSKCC	GRCh37	9	5054631	5054631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	120	332	0	ENST00000381652.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000381652	NM_004972.3	228	cGa/cAa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120493437	120493437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	160	389	0	ENST00000256646.2:c.2389G>A	p.Asp797Asn	p.D797N	ENST00000256646	NM_024408.3	797	Gat/Aat																																																																														
FGF19	0	MSKCC	GRCh37	11	69518557	69518557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	94	356	3	ENST00000294312.3:c.88G>A	p.Ala30Thr	p.A30T	ENST00000294312	NM_005117.2	30	Gcg/Acg																																																																														
PGR	0	MSKCC	GRCh37	11	100909851	100909851	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	120	175	0	ENST00000325455.5:c.2798A>T	p.Lys933Met	p.K933M	ENST00000325455	NM_001202474.3	933	aAg/aTg																																																																														
ETV6	0	MSKCC	GRCh37	12	12006381	12006381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	78	333	0	ENST00000396373.4:c.349C>T	p.Leu117Phe	p.L117F	ENST00000396373	NM_001987.4	117	Ctt/Ttt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49448351	49448351	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	285	587	0	ENST00000301067.7:c.360C>G	p.Phe120Leu	p.F120L	ENST00000301067	NM_003482.3	120	ttC/ttG																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43769857	43769857	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	199	526	2	ENST00000382044.4:c.889C>T	p.Gln297Ter	p.Q297*	ENST00000382044	NM_001141980.1	297	Cag/Tag																																																																														
BLM	0	MSKCC	GRCh37	15	91347466	91347466	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	194	508	1	ENST00000355112.3:c.3628C>T	p.Gln1210Ter	p.Q1210*	ENST00000355112	NM_000057.2	1210	Cag/Tag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274147	10274147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	111	492	0	ENST00000330684.3:c.122G>A	p.Gly41Asp	p.G41D	ENST00000330684	NM_001134407.1	41	gGt/gAt																																																																														
YES1	0	MSKCC	GRCh37	18	745846	745846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	64	538	0	ENST00000314574.4:c.586C>T	p.Leu196Phe	p.L196F	ENST00000314574	NM_005433.3	196	Ctt/Ttt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212395	36212395	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	146	682	1	ENST00000222270.7:c.2146A>T	p.Lys716Ter	p.K716*	ENST00000222270	NM_014727.1	716	Aag/Tag																																																																														
SOS1	0	MSKCC	GRCh37	2	39241948	39241948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	99	440	0	ENST00000402219.2:c.1898C>T	p.Ser633Phe	p.S633F	ENST00000402219	NM_005633.3	633	tCc/tTc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212488747	212488747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	196	424	1	ENST00000342788.4:c.2102G>A	p.Ser701Asn	p.S701N	ENST00000342788	NM_005235.2	701	aGt/aAt																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42866441	42866441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	328	802	0	ENST00000398585.3:c.191C>T	p.Pro64Leu	p.P64L	ENST00000398585	NM_001135099.1	64	cCc/cTc																																																																														
RAF1	0	MSKCC	GRCh37	3	12641665	12641665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	179	427	0	ENST00000251849.4:c.976G>A	p.Glu326Lys	p.E326K	ENST00000251849	NM_002880.3	326	Gag/Aag																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149515191	149515191	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	140	556	0	ENST00000261799.4:c.291A>C	p.Glu97Asp	p.E97D	ENST00000261799	NM_002609.3	97	gaA/gaC																																																																														
VEGFA	0	MSKCC	GRCh37	6	43748512	43748512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	129	485	0	ENST00000523873.1:c.466A>G	p.Lys156Glu	p.K156E	ENST00000523873		156	Aag/Gag																																																																														
ROS1	0	MSKCC	GRCh37	6	117622250	117622250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	108	477	0	ENST00000368508.3:c.6620C>T	p.Thr2207Ile	p.T2207I	ENST00000368508	NM_002944.2	2207	aCt/aTt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527847	157527847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	199	432	0	ENST00000346085.5:c.5572G>A	p.Glu1858Lys	p.E1858K	ENST00000346085	NM_020732.3	1858	Gag/Aag																																																																														
JAK2	0	MSKCC	GRCh37	9	5022079	5022079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	87	456	0	ENST00000381652.3:c.92C>T	p.Ser31Phe	p.S31F	ENST00000381652	NM_004972.3	31	tCt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	306	533	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112173968	112173968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	172	359	0	ENST00000257430.4:c.2677G>T	p.Glu893Ter	p.E893*	ENST00000257430	NM_000038.5	893	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	50	325	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332916	153332916	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	78	270	1	ENST00000281708.4:c.40C>T	p.Arg14Ter	p.R14*	ENST00000281708	NM_033632.3	14	Cga/Tga																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18573889	18573889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	164	399	0	ENST00000266497.5:c.2209del	p.Ile737PhefsTer9	p.I737Ffs*9	ENST00000266497		736	gAa/ga																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829647	72829647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	240	531	1	ENST00000268489.5:c.6934C>T	p.Arg2312Trp	p.R2312W	ENST00000268489	NM_006885.3	2312	Cgg/Tgg																																																																														
IRS1	0	MSKCC	GRCh37	2	227660462	227660462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143760685		P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	43	410	0	ENST00000305123.5:c.2993G>A	p.Arg998His	p.R998H	ENST00000305123	NM_005544.2	998	cGt/cAt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247337	153247337	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	85	311	0	ENST00000281708.4:c.1465G>T	p.Glu489Ter	p.E489*	ENST00000281708	NM_033632.3	489	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	77	525	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
KDR	0	MSKCC	GRCh37	4	55958788	55958788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	45	576	1	ENST00000263923.4:c.3065G>A	p.Arg1022Gln	p.R1022Q	ENST00000263923	NM_002253.2	1022	cGa/cAa																																																																														
FAT1	0	MSKCC	GRCh37	4	187627970	187627972	+	inframe_deletion	In_Frame_Del	DEL	TTT	TTT	-			P-0030505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	100	588	0	ENST00000441802.2:c.3010_3012del	p.Lys1004del	p.K1004del	ENST00000441802	NM_005245.3	1004	AAA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	170	596	3	ENST00000269305.4:c.572_574del	p.Pro191del	p.P191del	ENST00000269305	NM_001126112.2	191	cCTCag/cag																																																																														
RB1	0	MSKCC	GRCh37	13	48951087	48951088	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	64	275	0	ENST00000267163.4:c.1251_1252delAA	p.Arg418SerfsTer9	p.R418Sfs*9	ENST00000267163	NM_000321.2	417	AAa/a																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	105	345	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
BRD4	0	MSKCC	GRCh37	19	15350213	15350213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	289	659	0	ENST00000263377.2:c.3566C>T	p.Ala1189Val	p.A1189V	ENST00000263377	NM_058243.2	1189	gCg/gTg																																																																														
BCL6	0	MSKCC	GRCh37	3	187451406	187451406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	181	393	1	ENST00000232014.4:c.76C>T	p.Arg26Trp	p.R26W	ENST00000232014	NM_001130845.1	26	Cgg/Tgg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	90	613	1	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	182	671	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
TSC2	0	MSKCC	GRCh37	16	2134999	2134999	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs74363455		P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	275	706	0	ENST00000219476.3:c.4541C>A	p.Ser1514Ter	p.S1514*	ENST00000219476	NM_000548.3	1514	tCa/tAa																																																																														
BCL2	0	MSKCC	GRCh37	18	60985395	60985395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	130	638	0	ENST00000333681.4:c.505C>A	p.Leu169Met	p.L169M	ENST00000333681		169	Ctg/Atg																																																																														
CARM1	0	MSKCC	GRCh37	19	11027167	11027167	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	163	634	0	ENST00000327064.4:c.932A>T	p.Asn311Ile	p.N311I	ENST00000327064	NM_199141.1	311	aAc/aTc																																																																														
DAXX	0	MSKCC	GRCh37	6	33287787	33287787	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	320	655	0	ENST00000374542.5:c.1465+1G>A		p.X489_splice	ENST00000374542	NM_001141970.1	489																																																																															
TP53	0	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	102	500	0	ENST00000269305.4:c.712T>C	p.Cys238Arg	p.C238R	ENST00000269305	NM_001126112.2	238	Tgt/Cgt																																																																														
RARA	0	MSKCC	GRCh37	17	38506115	38506115	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	128	548	0	ENST00000254066.5:c.407C>G	p.Thr136Ser	p.T136S	ENST00000254066	NM_000964.3	136	aCc/aGc																																																																														
KDR	0	MSKCC	GRCh37	4	55976672	55976672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	122	529	0	ENST00000263923.4:c.1153A>G	p.Ile385Val	p.I385V	ENST00000263923	NM_002253.2	385	Att/Gtt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602620	10602620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	344	508	2	ENST00000171111.5:c.958C>T	p.Arg320Trp	p.R320W	ENST00000171111	NM_203500.1	320	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579582	7579583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	377	501	0	ENST00000269305.4:c.104dup	p.Leu35PhefsTer8	p.L35Ffs*8	ENST00000269305	NM_001126112.2	35	ttg/ttTg																																																																														
RB1	0	MSKCC	GRCh37	13	48937094	48937094	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	149	233	1	ENST00000267163.4:c.861+1G>A		p.X287_splice	ENST00000267163	NM_000321.2	287																																																																															
FH	0	MSKCC	GRCh37	1	241667399	241667399	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	128	392	0	ENST00000366560.3:c.1051T>C	p.Ser351Pro	p.S351P	ENST00000366560	NM_000143.3	351	Tca/Cca																																																																														
SDHD	0	MSKCC	GRCh37	11	111965561	111965561	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	98	176	0	ENST00000375549.3:c.347A>G	p.His116Arg	p.H116R	ENST00000375549	NM_003002.3	116	cAt/cGt																																																																														
ETV6	0	MSKCC	GRCh37	12	12037400	12037400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	331	516	0	ENST00000396373.4:c.1031A>G	p.Tyr344Cys	p.Y344C	ENST00000396373	NM_001987.4	344	tAc/tGc																																																																														
DIS3	0	MSKCC	GRCh37	13	73336101	73336101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	179	218	0	ENST00000377767.4:c.2302G>C	p.Ala768Pro	p.A768P	ENST00000377767	NM_014953.3	768	Gcg/Ccg																																																																														
MGA	0	MSKCC	GRCh37	15	42041662	42041662	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	286	476	0	ENST00000219905.7:c.5857A>T	p.Lys1953Ter	p.K1953*	ENST00000219905	NM_001164273.1	1953	Aag/Tag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43720315	43720315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	329	485	1	ENST00000382044.4:c.3727C>A	p.Arg1243Ser	p.R1243S	ENST00000382044	NM_001141980.1	1243	Cgt/Agt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680727	88680727	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	319	531	0	ENST00000360948.2:c.530A>T	p.Gln177Leu	p.Q177L	ENST00000360948	NM_001012338.2	177	cAg/cTg																																																																														
SOCS1	0	MSKCC	GRCh37	16	11348794	11348794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	78	173	0	ENST00000332029.2:c.542G>A	p.Arg181His	p.R181H	ENST00000332029	NM_003745.1	181	cGc/cAc																																																																														
PMS1	0	MSKCC	GRCh37	2	190742095	190742095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	130	432	0	ENST00000441310.2:c.2732A>C	p.Glu911Ala	p.E911A	ENST00000441310	NM_000534.4	911	gAa/gCa																																																																														
SETD2	0	MSKCC	GRCh37	3	47098910	47098910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	310	534	0	ENST00000409792.3:c.6364C>G	p.Arg2122Gly	p.R2122G	ENST00000409792	NM_014159.6	2122	Cgg/Ggg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134885815	134885815	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	152	427	0	ENST00000398015.3:c.1726A>T	p.Ser576Cys	p.S576C	ENST00000398015	NM_004441.4	576	Agc/Tgc																																																																														
BCOR	0	MSKCC	GRCh37	X	39933311	39933311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	190	589	0	ENST00000378444.4:c.1288C>A	p.Gln430Lys	p.Q430K	ENST00000378444	NM_001123385.1	430	Cag/Aag																																																																														
MED12	0	MSKCC	GRCh37	X	70340976	70340976	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	150	436	0	ENST00000374080.3:c.709G>T	p.Glu237Ter	p.E237*	ENST00000374080		237	Gag/Tag																																																																														
ATRX	0	MSKCC	GRCh37	X	76939495	76939495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	267	474	0	ENST00000373344.5:c.1253G>T	p.Arg418Leu	p.R418L	ENST00000373344	NM_000489.3	418	cGa/cTa																																																																														
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	144	455	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581157	48581157	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	42	235	0	ENST00000342988.3:c.461C>G	p.Ser154Ter	p.S154*	ENST00000342988	NM_005359.5	154	tCa/tGa																																																																														
PTEN	0	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	31	280	0	ENST00000371953.3:c.253+1G>A		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
EPHA5	0	MSKCC	GRCh37	4	66213800	66213800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	26	378	0	ENST00000273854.3:c.2630G>A	p.Arg877Lys	p.R877K	ENST00000273854	NM_004439.5	877	aGa/aAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106072	27106072	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	100	397	1	ENST00000324856.7:c.5683G>T	p.Glu1895Ter	p.E1895*	ENST00000324856	NM_006015.4	1895	Gag/Tag																																																																														
HGF	0	MSKCC	GRCh37	7	81372774	81372774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	79	308	0	ENST00000222390.5:c.760G>A	p.Gly254Ser	p.G254S	ENST00000222390	NM_000601.4	254	Ggc/Agc																																																																														
YES1	0	MSKCC	GRCh37	18	724462	724462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	55	572	0	ENST00000314574.4:c.1594G>T	p.Ala532Ser	p.A532S	ENST00000314574	NM_005433.3	532	Gct/Tct																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39609334	39609334	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	43	317	0	ENST00000262039.4:c.1636C>T	p.Gln546Ter	p.Q546*	ENST00000262039	NM_002647.2	546	Cag/Tag																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55155268	55155268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	46	391	0	ENST00000257290.5:c.2867G>T	p.Gly956Val	p.G956V	ENST00000257290	NM_006206.4	956	gGa/gTa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356248	66356248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	75	464	0	ENST00000273854.3:c.1249C>G	p.Arg417Gly	p.R417G	ENST00000273854	NM_004439.5	417	Cgg/Ggg																																																																														
ESR1	0	MSKCC	GRCh37	6	152382185	152382185	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	62	361	0	ENST00000206249.3:c.1295C>G	p.Ser432Ter	p.S432*	ENST00000206249	NM_000125.3	432	tCa/tGa																																																																														
PREX2	0	MSKCC	GRCh37	8	68931823	68931823	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	56	434	0	ENST00000288368.4:c.253A>G	p.Lys85Glu	p.K85E	ENST00000288368	NM_024870.2	85	Aaa/Gaa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974701	21974701	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	57	300	0	ENST00000304494.5:c.126T>A	p.Asn42Lys	p.N42K	ENST00000304494	NM_000077.4	42	aaT/aaA																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974701	21974701	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	57	300	0	ENST00000304494.5:c.126T>A	p.Asn42Lys	p.N42K	ENST00000304494	NM_000077.4	42	aaT/aaA																																																																														
STAG2	0	MSKCC	GRCh37	X	123224719	123224719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	65	223	0	ENST00000218089.9:c.3483G>A	p.Trp1161Ter	p.W1161*	ENST00000218089	NM_001042749.1	1161	tgG/tgA																																																																														
PTEN	0	MSKCC	GRCh37	10	89717732	89717749	+	inframe_deletion	In_Frame_Del	DEL	ATCAAAGTAGAGTTCTTC	ATCAAAGTAGAGTTCTTC	-			P-0014477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	182	389	0	ENST00000371953.3:c.757_774del	p.Ile253_Phe258del	p.I253_F258del	ENST00000371953	NM_000314.4	253	ATCAAAGTAGAGTTCTTC/-																																																																														
GATA3	0	MSKCC	GRCh37	10	8115897	8115900	+	protein_altering_variant	In_Frame_Del	DEL	ATGC	ATGC	G			P-0014477-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	168	449	0	ENST00000346208.3:c.1243_1246delinsG	p.Met415_Leu416delinsVal	p.M415_L416delinsV	ENST00000346208		415	ATGCtg/Gtg																																																																														
MET	0	MSKCC	GRCh37	7	116411875	116411898	+	splice_region_variant,intron_variant	Splice_Region	DEL	CAAGCTCTTTCTTTCTCTCTGTTT	CAAGCTCTTTCTTTCTCTCTGTTT	-			P-0028694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	90	909	0	ENST00000397752.3:c.2888-28_2888-5del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
RBM10	0	MSKCC	GRCh37	X	47039279	47039279	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0028694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	50	829	0	ENST00000329236.7:c.672del	p.Ile225SerfsTer6	p.I225Sfs*6	ENST00000329236	NM_001204466.1	224	aCc/ac																																																																														
BTK	0	MSKCC	GRCh37	X	100629553	100629553	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	41	643	0	ENST00000308731.7:c.211A>C	p.Lys71Gln	p.K71Q	ENST00000308731	NM_000061.2	71	Aaa/Caa																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	155	526	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	201	303	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	152	449	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	153	527	2	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	244	482	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	84	254	0	ENST00000358487.5:c.755C>T	p.Ser252Leu	p.S252L	ENST00000358487	NM_000141.4	252	tCg/tTg																																																																														
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	171	667	0	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	117	368	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	119	382	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	143	488	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45871932	45871932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	201	478	0	ENST00000391945.4:c.316G>A	p.Gly106Arg	p.G106R	ENST00000391945	NM_000400.3	106	Gga/Aga																																																																														
NF1	0	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	190	510	2	ENST00000358273.4:c.2033delC	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	114	442	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	124	380	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	148	573	4	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346153	89346153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	56	217	0	ENST00000301030.4:c.6797C>T	p.Ala2266Val	p.A2266V	ENST00000301030	NM_001256183.1	2266	gCg/gTg																																																																														
INHA	0	MSKCC	GRCh37	2	220439839	220439839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	177	540	1	ENST00000243786.2:c.692G>A	p.Arg231Gln	p.R231Q	ENST00000243786	NM_002191.3	231	cGa/cAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105892	27105892	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	139	353	0	ENST00000324856.7:c.5503C>T	p.Gln1835Ter	p.Q1835*	ENST00000324856	NM_006015.4	1835	Cag/Tag																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41748296	41748296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	205	523	1	ENST00000226382.2:c.473G>A	p.Arg158His	p.R158H	ENST00000226382	NM_003924.3	158	cGc/cAc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856623	111856623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	104	257	0	ENST00000341259.2:c.674G>A	p.Arg225His	p.R225H	ENST00000341259	NM_005475.2	225	cGc/cAc																																																																														
IRS1	0	MSKCC	GRCh37	2	227661395	227661396	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	68	410	0	ENST00000305123.5:c.2057_2059dup	p.Ser686dup	p.S686dup	ENST00000305123	NM_005544.2	686	aac/aGCAac																																																																														
CCND1	0	MSKCC	GRCh37	11	69466018	69466018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	156	572	0	ENST00000227507.2:c.856A>G	p.Thr286Ala	p.T286A	ENST00000227507	NM_053056.2	286	Aca/Gca																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	101	231	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																																																														
NSD1	0	MSKCC	GRCh37	5	176673711	176673711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	116	360	0	ENST00000439151.2:c.4411C>T	p.Arg1471Ter	p.R1471*	ENST00000439151	NM_022455.4	1471	Cga/Tga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197713	66197713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	127	285	0	ENST00000273854.3:c.2986G>A	p.Ala996Thr	p.A996T	ENST00000273854	NM_004439.5	996	Gct/Act																																																																														
RAF1	0	MSKCC	GRCh37	3	12633229	12633229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	181	444	0	ENST00000251849.4:c.1171A>G	p.Arg391Gly	p.R391G	ENST00000251849	NM_002880.3	391	Agg/Ggg																																																																														
MTOR	0	MSKCC	GRCh37	1	11175494	11175494	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	133	424	1	ENST00000361445.4:c.7048A>T	p.Ser2350Cys	p.S2350C	ENST00000361445	NM_004958.3	2350	Agt/Tgt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717662	89717663	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	161	431	1	ENST00000371953.3:c.689dup	p.Pro231ThrfsTer12	p.P231Tfs*12	ENST00000371953	NM_000314.4	229	-/G																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376116	118376116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	30	388	0	ENST00000534358.1:c.9509C>T	p.Ala3170Val	p.A3170V	ENST00000534358	NM_005933.3	3170	gCa/gTa																																																																														
CHEK1	0	MSKCC	GRCh37	11	125514420	125514420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	83	284	1	ENST00000428830.2:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000428830	NM_001114121.2	372	cGg/cAg																																																																														
RECQL	0	MSKCC	GRCh37	12	21624017	21624017	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	63	175	0	ENST00000421138.2:c.1683del	p.Phe561LeufsTer10	p.F561Lfs*10	ENST00000421138		561	ttT/tt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435164	49435168	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGG	GTGGG	-			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	79	428	0	ENST00000301067.7:c.6385_6389del	p.Pro2129TyrfsTer24	p.P2129Yfs*24	ENST00000301067	NM_003482.3	2129	CCCACt/t																																																																														
POLE	0	MSKCC	GRCh37	12	133238270	133238270	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	89	263	0	ENST00000320574.5:c.2707G>T	p.Glu903Ter	p.E903*	ENST00000320574	NM_006231.2	903	Gaa/Taa																																																																														
FLT3	0	MSKCC	GRCh37	13	28592647	28592647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	92	427	0	ENST00000241453.7:c.2498C>T	p.Ala833Val	p.A833V	ENST00000241453	NM_004119.2	833	gCt/gTt																																																																														
MAPK3	0	MSKCC	GRCh37	16	30128041	30128041	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	148	506	0	ENST00000263025.4:c.1088T>G	p.Leu363Arg	p.L363R	ENST00000263025	NM_002746.2	363	cTc/cGc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59924581	59924581	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	63	240	0	ENST00000259008.2:c.508A>C	p.Ile170Leu	p.I170L	ENST00000259008	NM_032043.2	170	Att/Ctt																																																																														
AXL	0	MSKCC	GRCh37	19	41758333	41758333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	139	419	1	ENST00000301178.4:c.1789G>A	p.Val597Ile	p.V597I	ENST00000301178	NM_021913.4	597	Gtc/Atc																																																																														
POLD1	0	MSKCC	GRCh37	19	50918708	50918708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	103	366	0	ENST00000440232.2:c.2578G>A	p.Ala860Thr	p.A860T	ENST00000440232	NM_002691.3	860	Gcg/Acg																																																																														
CASP8	0	MSKCC	GRCh37	2	202131250	202131250	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	35	379	0	ENST00000358485.4:c.218T>C	p.Leu73Pro	p.L73P	ENST00000358485	NM_001080125.1	73	cTg/cCg																																																																														
TOP1	0	MSKCC	GRCh37	20	39728731	39728732	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	139	320	0	ENST00000361337.2:c.1013_1014del	p.Tyr338TrpfsTer7	p.Y338Wfs*7	ENST00000361337	NM_003286.2	337	gaATat/gaat																																																																														
MLH1	0	MSKCC	GRCh37	3	37056026	37056029	+	frameshift_variant	Frame_Shift_Del	DEL	TTCA	TTCA	-			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	96	323	0	ENST00000231790.2:c.782_785del	p.Phe261SerfsTer6	p.F261Sfs*6	ENST00000231790	NM_000249.3	261	TTCAtc/tc																																																																														
MLH1	0	MSKCC	GRCh37	3	37092123	37092123	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	142	304	0	ENST00000231790.2:c.2250C>G	p.Tyr750Ter	p.Y750*	ENST00000231790	NM_000249.3	750	taC/taG																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099357	157099362	+	inframe_deletion	In_Frame_Del	DEL	CCACCT	CCACCT	-			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	18	238	0	ENST00000346085.5:c.299_304del	p.Leu100_His101del	p.L100_H101del	ENST00000346085	NM_020732.3	98	caCCACCTc/cac																																																																														
PREX2	0	MSKCC	GRCh37	8	69129916	69129916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	113	244	0	ENST00000288368.4:c.4670G>A	p.Arg1557His	p.R1557H	ENST00000288368	NM_024870.2	1557	cGt/cAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89720857	89720858	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CT	CT	A			P-0030260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	111	254	0	ENST00000371953.3:c.1008_1009delinsA	p.Tyr336Ter	p.Y336*	ENST00000371953	NM_000314.4	336	taCTtt/taAtt																																																																														
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	258	606	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	130	620	0	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32900635	32900635	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	97	329	1	ENST00000380152.3:c.517-1G>T		p.X173_splice	ENST00000380152		173																																																																															
PRKAR1A	0	MSKCC	GRCh37	17	66522048	66522048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	91	226	0	ENST00000358598.2:c.703C>T	p.Leu235Phe	p.L235F	ENST00000358598	NM_212471.2	235	Ctc/Ttc																																																																														
CSDE1	0	MSKCC	GRCh37	1	115266564	115266564	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	211	608	0	ENST00000438362.2:c.1951delC	p.Leu651Ter	p.L651*	ENST00000438362	NM_001242891.1	651	Ctg/tg																																																																														
KDM5A	0	MSKCC	GRCh37	12	406269	406269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	313	501	1	ENST00000399788.2:c.4172G>T	p.Trp1391Leu	p.W1391L	ENST00000399788	NM_001042603.1	1391	tGg/tTg																																																																														
FLT3	0	MSKCC	GRCh37	13	28592687	28592687	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	174	630	0	ENST00000241453.7:c.2458A>C	p.Thr820Pro	p.T820P	ENST00000241453	NM_004119.2	820	Acc/Ccc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288876	15288876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	91	201	0	ENST00000263388.2:c.3863G>T	p.Arg1288Leu	p.R1288L	ENST00000263388	NM_000435.2	1288	cGg/cTg																																																																														
MYCN	0	MSKCC	GRCh37	2	16085908	16085908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	46	571	0	ENST00000281043.3:c.1084G>T	p.Val362Phe	p.V362F	ENST00000281043	NM_005378.4	362	Gtc/Ttc																																																																														
MST1R	0	MSKCC	GRCh37	3	49935545	49935545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	301	711	0	ENST00000296474.3:c.1819C>A	p.His607Asn	p.H607N	ENST00000296474	NM_002447.2	607	Cat/Aat																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259595	89259595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	115	326	0	ENST00000336596.2:c.739G>T	p.Glu247Ter	p.E247*	ENST00000336596	NM_005233.5	247	Gaa/Taa																																																																														
INHBA	0	MSKCC	GRCh37	7	41729441	41729441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	59	528	0	ENST00000242208.4:c.1088G>A	p.Gly363Glu	p.G363E	ENST00000242208	NM_002192.2	363	gGg/gAg																																																																														
BTK	0	MSKCC	GRCh37	X	100630236	100630236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	149	179	0	ENST00000308731.7:c.37C>G	p.Arg13Gly	p.R13G	ENST00000308731	NM_000061.2	13	Cga/Gga																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508176	106508176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	57	222	0	ENST00000359195.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000359195	NM_002649.2	57	gCg/gTg																																																																														
NUP93	0	MSKCC	GRCh37	16	56867319	56867319	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs138909849		P-0030544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	73	313	0	ENST00000308159.5:c.1537+1G>A		p.X513_splice	ENST00000308159	NM_014669.4	513																																																																															
PDPK1	0	MSKCC	GRCh37	16	2647245	2647245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	114	531	0	ENST00000342085.4:c.1523C>T	p.Ala508Val	p.A508V	ENST00000342085	NM_002613.4	508	gCc/gTc																																																																														
JAK2	0	MSKCC	GRCh37	9	5069966	5069966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	54	359	0	ENST00000381652.3:c.1555G>A	p.Asp519Asn	p.D519N	ENST00000381652	NM_004972.3	519	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	62	526	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																														
ARID2	0	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	42	476	1	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
ROS1	0	MSKCC	GRCh37	6	117658469	117658469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	32	579	0	ENST00000368508.3:c.5114C>T	p.Ser1705Leu	p.S1705L	ENST00000368508	NM_002944.2	1705	tCa/tTa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123244982	123244982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	35	554	1	ENST00000358487.5:c.2122C>T	p.Pro708Ser	p.P708S	ENST00000358487	NM_000141.4	708	Ccc/Tcc																																																																														
BRAF	0	MSKCC	GRCh37	7	140481408	140481408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	41	373	0	ENST00000288602.6:c.1400C>T	p.Ser467Leu	p.S467L	ENST00000288602	NM_004333.4	467	tCa/tTa																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31389107	31389107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	24	455	0	ENST00000328111.2:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000328111	NM_006892.3	674	Gaa/Aaa																																																																														
KDR	0	MSKCC	GRCh37	4	55976644	55976644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	37	486	0	ENST00000263923.4:c.1181G>A	p.Gly394Glu	p.G394E	ENST00000263923	NM_002253.2	394	gGa/gAa																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469139	25469139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	43	631	0	ENST00000264709.3:c.1319G>T	p.Trp440Leu	p.W440L	ENST00000264709	NM_175629.2	440	tGg/tTg																																																																														
TET2	0	MSKCC	GRCh37	4	106196487	106196487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	22	370	0	ENST00000380013.4:c.4820C>T	p.Ser1607Leu	p.S1607L	ENST00000380013	NM_001127208.2	1607	tCa/tTa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120480014	120480014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	62	526	0	ENST00000256646.2:c.3413C>T	p.Pro1138Leu	p.P1138L	ENST00000256646	NM_024408.3	1138	cCc/cTc																																																																														
CCND2	0	MSKCC	GRCh37	12	4385262	4385262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	41	487	0	ENST00000261254.3:c.287C>T	p.Ser96Phe	p.S96F	ENST00000261254	NM_001759.3	96	tCc/tTc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43784490	43784490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	44	509	0	ENST00000382044.4:c.184C>T	p.Pro62Ser	p.P62S	ENST00000382044	NM_001141980.1	62	Cct/Tct																																																																														
IDH2	0	MSKCC	GRCh37	15	90628610	90628610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	39	746	1	ENST00000330062.3:c.977C>T	p.Ser326Phe	p.S326F	ENST00000330062	NM_002168.2	326	tCc/tTc																																																																														
NF1	0	MSKCC	GRCh37	17	29563032	29563032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	29	315	0	ENST00000358273.4:c.3967C>T	p.Pro1323Ser	p.P1323S	ENST00000358273	NM_001042492.2	1323	Cct/Tct																																																																														
NF1	0	MSKCC	GRCh37	17	29664540	29664540	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	53	475	0	ENST00000358273.4:c.6582del	p.Glu2195ArgfsTer5	p.E2195Rfs*5	ENST00000358273	NM_001042492.2	2194	agA/ag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123733	11123735	+	frameshift_variant	Frame_Shift_Del	DEL	TAC	TAC	CA			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	60	610	2	ENST00000344626.4:c.2383_2385delinsCA	p.Tyr795HisfsTer36	p.Y795Hfs*36	ENST00000344626	NM_003072.3	795	TAC/CA																																																																														
ALK	0	MSKCC	GRCh37	2	29497983	29497983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	30	440	0	ENST00000389048.3:c.2023C>T	p.Pro675Ser	p.P675S	ENST00000389048	NM_004304.4	675	Ccc/Tcc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212615381	212615381	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	42	501	0	ENST00000342788.4:c.605A>G	p.Glu202Gly	p.E202G	ENST00000342788	NM_005235.2	202	gAa/gGa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546653	9546653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	22	394	0	ENST00000353224.5:c.1369G>A	p.Glu457Lys	p.E457K	ENST00000353224	NM_177990.2	457	Gaa/Aaa																																																																														
RAC2	0	MSKCC	GRCh37	22	37627277	37627277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	47	816	1	ENST00000249071.6:c.442G>A	p.Glu148Lys	p.E148K	ENST00000249071	NM_002872.4	148	Gag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187541765	187541765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	24	422	0	ENST00000441802.2:c.5975C>T	p.Ser1992Phe	p.S1992F	ENST00000441802	NM_005245.3	1992	tCc/tTc																																																																														
APC	0	MSKCC	GRCh37	5	112179035	112179035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	21	360	0	ENST00000257430.4:c.7744G>A	p.Glu2582Lys	p.E2582K	ENST00000257430	NM_000038.5	2582	Gaa/Aaa																																																																														
ROS1	0	MSKCC	GRCh37	6	117641099	117641099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	52	559	0	ENST00000368508.3:c.5872G>A	p.Glu1958Lys	p.E1958K	ENST00000368508	NM_002944.2	1958	Gaa/Aaa																																																																														
ROS1	0	MSKCC	GRCh37	6	117681075	117681075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	32	556	0	ENST00000368508.3:c.3545G>A	p.Arg1182Lys	p.R1182K	ENST00000368508	NM_002944.2	1182	aGa/aAa																																																																														
ROS1	0	MSKCC	GRCh37	6	117710528	117710528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	15	221	0	ENST00000368508.3:c.1744C>T	p.Leu582Phe	p.L582F	ENST00000368508	NM_002944.2	582	Ctt/Ttt																																																																														
SMO	0	MSKCC	GRCh37	7	128846143	128846143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	71	684	1	ENST00000249373.3:c.1073C>T	p.Ser358Phe	p.S358F	ENST00000249373	NM_005631.4	358	tCc/tTc																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88676924	88676926	+	missense_variant	Missense_Mutation	ONP	GTC	GTC	TTT			P-0030546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	38	404	0	ENST00000372037.3:c.709_711delinsTTT	p.Val237Phe	p.V237F	ENST00000372037	NM_004329.2	237	GTC/TTT																																																																														
APC	0	MSKCC	GRCh37	5	112178747	112178747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	224	383	0	ENST00000257430.4:c.7456C>T	p.Pro2486Ser	p.P2486S	ENST00000257430	NM_000038.5	2486	Cct/Tct																																																																														
NF2	0	MSKCC	GRCh37	22	30035196	30035196	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	181	441	1	ENST00000338641.4:c.359del	p.Leu120TyrfsTer3	p.L120Yfs*3	ENST00000338641	NM_000268.3	120	Tta/ta																																																																														
TAP2	0	MSKCC	GRCh37	6	32805537	32805537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	427	730	16	ENST00000374899.4:c.474C>A	p.Phe158Leu	p.F158L	ENST00000374899	NM_018833.2	158	ttC/ttA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	110	288	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	1022	538	0	ENST00000269305.4:c.503A>C	p.His168Pro	p.H168P	ENST00000269305	NM_001126112.2	168	cAc/cCc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149513317	149513317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147568171		P-0030557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	363	415	1	ENST00000261799.4:c.766C>T	p.Arg256Trp	p.R256W	ENST00000261799	NM_002609.3	256	Cgg/Tgg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458902	120458902	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	477	576	1	ENST00000256646.2:c.6443del	p.Leu2148TyrfsTer7	p.L2148Yfs*7	ENST00000256646	NM_024408.3	2148	tTa/ta																																																																														
CDK4	0	MSKCC	GRCh37	12	58145418	58145419	+	missense_variant	Missense_Mutation	DNP	CT	CT	TG			P-0030557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	346	376	0	ENST00000257904.6:c.82_83delinsCA	p.Ser28His	p.S28H	ENST00000257904	NM_000075.3	28	AGt/CAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	106	312	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	156	451	0	ENST00000269305.4:c.761T>A	p.Ile254Asn	p.I254N	ENST00000269305	NM_001126112.2	254	aTc/aAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105809	27105810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	69	349	0	ENST00000324856.7:c.5421dup	p.Lys1808Ter	p.K1808*	ENST00000324856	NM_006015.4	1807	agt/agTt																																																																														
YES1	0	MSKCC	GRCh37	18	742978	742978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	33	353	0	ENST00000314574.4:c.1000C>T	p.Pro334Ser	p.P334S	ENST00000314574	NM_005433.3	334	Cca/Tca																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	81	454	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	158	522	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0030560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	178	570	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
REL	0	MSKCC	GRCh37	2	61149574	61149574	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	105	368	0	ENST00000295025.8:c.1764T>A	p.Ser588Arg	p.S588R	ENST00000295025	NM_002908.2	588	agT/agA																																																																														
TET2	0	MSKCC	GRCh37	4	106155460	106155460	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	72	376	0	ENST00000380013.4:c.361G>T	p.Glu121Ter	p.E121*	ENST00000380013	NM_001127208.2	121	Gaa/Taa																																																																														
RBM10	0	MSKCC	GRCh37	X	47041399	47041399	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	217	655	1	ENST00000329236.7:c.1509C>A	p.Tyr503Ter	p.Y503*	ENST00000329236	NM_001204466.1	503	taC/taA																																																																														
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	211	490	2	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	170	431	2	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578283	7578283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	160	570	0	ENST00000269305.4:c.566C>A	p.Ala189Asp	p.A189D	ENST00000269305	NM_001126112.2	189	gCc/gAc																																																																														
POLE	0	MSKCC	GRCh37	12	133249808	133249808	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	73	516	0	ENST00000320574.5:c.1415A>C	p.Lys472Thr	p.K472T	ENST00000320574	NM_006231.2	472	aAg/aCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578484	7578484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	287	760	0	ENST00000269305.4:c.446C>A	p.Ser149Tyr	p.S149Y	ENST00000269305	NM_001126112.2	149	tCc/tAc																																																																														
FLCN	0	MSKCC	GRCh37	17	17131361	17131361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	204	693	0	ENST00000285071.4:c.91C>T	p.Gln31Ter	p.Q31*	ENST00000285071	NM_144997.5	31	Caa/Taa																																																																														
KDR	0	MSKCC	GRCh37	4	55961000	55961000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	61	441	0	ENST00000263923.4:c.2940G>T	p.Glu980Asp	p.E980D	ENST00000263923	NM_002253.2	980	gaG/gaT																																																																														
RICTOR	0	MSKCC	GRCh37	5	38946648	38946648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	28	302	0	ENST00000357387.3:c.4321G>A	p.Asp1441Asn	p.D1441N	ENST00000357387	NM_152756.3	1441	Gat/Aat																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106545714	106545714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	91	594	1	ENST00000359195.3:c.3191C>T	p.Ala1064Val	p.A1064V	ENST00000359195	NM_002649.2	1064	gCt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	55	527	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100356	27100356	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	57	502	0	ENST00000324856.7:c.4069del	p.Gln1357SerfsTer124	p.Q1357Sfs*124	ENST00000324856	NM_006015.4	1356	agC/ag																																																																														
PGR	0	MSKCC	GRCh37	11	100922185	100922185	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	53	371	0	ENST00000325455.5:c.2327T>A	p.Leu776Gln	p.L776Q	ENST00000325455	NM_001202474.3	776	cTg/cAg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81968090	81968090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	34	438	0	ENST00000359376.3:c.2796C>A	p.Asp932Glu	p.D932E	ENST00000359376	NM_002661.3	932	gaC/gaA																																																																														
NCOR1	0	MSKCC	GRCh37	17	15965566	15965566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	22	186	0	ENST00000268712.3:c.5240G>T	p.Arg1747Leu	p.R1747L	ENST00000268712	NM_006311.3	1747	cGa/cTa																																																																														
CD79B	0	MSKCC	GRCh37	17	62006836	62006836	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0030567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	49	456	1	ENST00000392795.3:c.553-1G>T		p.X185_splice	ENST00000392795	NM_001039933.1	185																																																																															
SRSF2	0	MSKCC	GRCh37	17	74733233	74733233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	51	407	0	ENST00000359995.5:c.10G>T	p.Gly4Cys	p.G4C	ENST00000359995	NM_001195427.1	4	Ggc/Tgc																																																																														
MET	0	MSKCC	GRCh37	7	116411898	116411904	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAAGAT	TTAAGAT	AA			P-0030567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	243	699	1	ENST00000397752.3:c.2888-5_2889delinsAA		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
SMO	0	MSKCC	GRCh37	7	128852092	128852092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	97	715	0	ENST00000249373.3:c.2164G>C	p.Gly722Arg	p.G722R	ENST00000249373	NM_005631.4	722	Ggg/Cgg																																																																														
RET	0	MSKCC	GRCh37	10	43597830	43597830	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	228	735	1	ENST00000355710.3:c.378C>A	p.Phe126Leu	p.F126L	ENST00000355710	NM_020975.4	126	ttC/ttA																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240996	53240996	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	143	273	0	ENST00000375401.3:c.1215A>C	p.Lys405Asn	p.K405N	ENST00000375401	NM_004187.3	405	aaA/aaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	202	482	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424164	49424164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	109	475	1	ENST00000301067.7:c.13898C>T	p.Ser4633Leu	p.S4633L	ENST00000301067	NM_003482.3	4633	tCg/tTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831414	72831414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	127	426	0	ENST00000268489.5:c.5167C>A	p.Gln1723Lys	p.Q1723K	ENST00000268489	NM_006885.3	1723	Cag/Aag																																																																														
RNF43	0	MSKCC	GRCh37	17	56492911	56492942	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	CCAGCTGCAGCTGGTGGCCACCACTCATGCTA	CCAGCTGCAGCTGGTGGCCACCACTCATGCTA	-			P-0030483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	129	214	0	ENST00000407977.2:c.-4_28del		p.*2*	ENST00000407977		2																																																																															
AXIN2	0	MSKCC	GRCh37	17	63545652	63545652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	97	445	1	ENST00000307078.5:c.942G>A	p.Met314Ile	p.M314I	ENST00000307078	NM_004655.3	314	atG/atA																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	101	285	0	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	291	625	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264361	46264361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	186	344	0	ENST00000371998.3:c.1408A>G	p.Ser470Gly	p.S470G	ENST00000371998		470	Agt/Ggt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600464	10600464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	1700	659	1	ENST00000171111.5:c.1391G>T	p.Gly464Val	p.G464V	ENST00000171111	NM_203500.1	464	gGc/gTc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			71	183	71	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			71	183	71	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																														
SPOP	0	MSKCC	GRCh37	17	47677765	47677765	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			840	170	476	2	ENST00000347630.2:c.1100del	p.Pro367HisfsTer5	p.P367Hfs*5	ENST00000347630	NM_001007230.1	367	cCa/ca																																																																														
SPEN	0	MSKCC	GRCh37	1	16258581	16258581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	1202	595	0	ENST00000375759.3:c.5846G>T	p.Arg1949Leu	p.R1949L	ENST00000375759	NM_015001.2	1949	cGg/cTg																																																																														
DDR2	0	MSKCC	GRCh37	1	162731181	162731181	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			766	581	424	0	ENST00000367921.3:c.1036A>T	p.Ile346Phe	p.I346F	ENST00000367921	NM_006182.2	346	Atc/Ttc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71944122	71944122	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	2090	613	0	ENST00000298229.2:c.1955A>T	p.Glu652Val	p.E652V	ENST00000298229	NM_001567.3	652	gAg/gTg																																																																														
TBX3	0	MSKCC	GRCh37	12	115117430	115117430	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	219	476	0	ENST00000257566.3:c.744C>G	p.Tyr248Ter	p.Y248*	ENST00000257566	NM_016569.3	248	taC/taG																																																																														
IGF1R	0	MSKCC	GRCh37	15	99478604	99478604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	615	558	0	ENST00000268035.6:c.3246G>T	p.Met1082Ile	p.M1082I	ENST00000268035	NM_000875.3	1082	atG/atT																																																																														
TP53	0	MSKCC	GRCh37	17	7577542	7577561	+	frameshift_variant	Frame_Shift_Del	DEL	TCATGCCGCCCATGCAGGAA	TCATGCCGCCCATGCAGGAA	-			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	395	653	0	ENST00000269305.4:c.720_739del	p.Ser240ArgfsTer17	p.S240Rfs*17	ENST00000269305	NM_001126112.2	240	agTTCCTGCATGGGCGGCATGAac/agac																																																																														
YES1	0	MSKCC	GRCh37	18	739749	739749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	678	560	0	ENST00000314574.4:c.1123G>A	p.Asp375Asn	p.D375N	ENST00000314574	NM_005433.3	375	Gat/Aat																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288740	15288741	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			31	150	29	0	ENST00000263388.2:c.3998_3999delinsTT	p.Gly1333Val	p.G1333V	ENST00000263388	NM_000435.2	1333	gGG/gTT																																																																														
BABAM1	0	MSKCC	GRCh37	19	17379718	17379718	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	1953	821	1	ENST00000359435.4:c.103G>T	p.Glu35Ter	p.E35*	ENST00000359435	NM_001033549.1	35	Gag/Tag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36217207	36217207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			3049	308	755	0	ENST00000222270.7:c.3956C>G	p.Ser1319Cys	p.S1319C	ENST00000222270	NM_014727.1	1319	tCt/tGt																																																																														
ERCC3	0	MSKCC	GRCh37	2	128047393	128047393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	268	357	1	ENST00000285398.2:c.529G>T	p.Val177Phe	p.V177F	ENST00000285398	NM_000122.1	177	Gtt/Ttt																																																																														
ERG	0	MSKCC	GRCh37	21	39772532	39772532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	262	601	0	ENST00000288319.7:c.709T>C	p.Tyr237His	p.Y237H	ENST00000288319	NM_182918.3	237	Tat/Cat																																																																														
RAC2	0	MSKCC	GRCh37	22	37622769	37622769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	1096	692	1	ENST00000249071.6:c.523G>T	p.Ala175Ser	p.A175S	ENST00000249071	NM_002872.4	175	Gcc/Tcc																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182683507	182683507	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	82	516	0	ENST00000292782.4:c.38G>T	p.Arg13Leu	p.R13L	ENST00000292782	NM_020640.2	13	cGt/cTt																																																																														
KDR	0	MSKCC	GRCh37	4	55946270	55946270	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	510	294	0	ENST00000263923.4:c.3909C>G	p.Ser1303Arg	p.S1303R	ENST00000263923	NM_002253.2	1303	agC/agG																																																																														
NPM1	0	MSKCC	GRCh37	5	170818363	170818363	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs11551576		P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	177	382	0	ENST00000296930.5:c.193A>G	p.Met65Val	p.M65V	ENST00000296930	NM_002520.6	65	Atg/Gtg																																																																														
CARD11	0	MSKCC	GRCh37	7	2976825	2976825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1859	474	729	0	ENST00000396946.4:c.1187G>T	p.Cys396Phe	p.C396F	ENST00000396946	NM_032415.4	396	tGc/tTc																																																																														
HGF	0	MSKCC	GRCh37	7	81381516	81381516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	38	345	0	ENST00000222390.5:c.545G>T	p.Gly182Val	p.G182V	ENST00000222390	NM_000601.4	182	gGg/gTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8319966	8319966	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			60	55	260	0	ENST00000356435.5:c.5535C>A	p.Ser1845Arg	p.S1845R	ENST00000356435		1845	agC/agA																																																																														
GATA1	0	MSKCC	GRCh37	X	48650616	48650617	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1537	167	650	0	ENST00000376670.3:c.586_587delinsAA	p.Leu196Lys	p.L196K	ENST00000376670	NM_002049.3	196	CTg/AAg																																																																														
GATA1	0	MSKCC	GRCh37	X	48652384	48652384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019765-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2426	331	822	1	ENST00000376670.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000376670	NM_002049.3	352	gGc/gTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0025975-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	182	603	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025975-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			76	1194	945	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025975-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	705	534	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792753	33792753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025975-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			65	10	51	0	ENST00000498907.2:c.568T>C	p.Ser190Pro	p.S190P	ENST00000498907	NM_004364.3	190	Tcg/Ccg																																																																														
RB1	0	MSKCC	GRCh37	13	48947514	48947568	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACATTTTCCTATTTTTATCCCCTCTAGGACTGTTATGAACACTATCCAACAATTA	ACATTTTCCTATTTTTATCCCCTCTAGGACTGTTATGAACACTATCCAACAATTA	-			P-0025975-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			30	251	361	1	ENST00000267163.4:c.1128-26_1156del		p.X376_splice	ENST00000267163	NM_000321.2	376																																																																															
INPP4B	0	MSKCC	GRCh37	4	143007327	143007327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025975-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	156	407	0	ENST00000262992.4:c.2457G>C	p.Lys819Asn	p.K819N	ENST00000262992	NM_001101669.1	819	aaG/aaC																																																																														
ARAF	0	MSKCC	GRCh37	X	47426725	47426725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025975-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			860	213	729	2	ENST00000377045.4:c.970G>A	p.Val324Met	p.V324M	ENST00000377045	NM_001654.4	324	Gtg/Atg																																																																														
PTEN	0	MSKCC	GRCh37	10	89711873	89711873	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0027193-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			150	148	331	2	ENST00000371953.3:c.493-2A>G		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																															
ERBB2	0	MSKCC	GRCh37	17	37863257	37863261	+	frameshift_variant	Frame_Shift_Del	DEL	GACAT	GACAT	-			P-0027193-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			418	363	498	13	ENST00000269571.5:c.90_94del	p.Asp30GlufsTer78	p.D30Efs*78	ENST00000269571		30	GACATg/g																																																																														
RNF43	0	MSKCC	GRCh37	17	56438288	56438289	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0027193-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			196	199	461	7	ENST00000407977.2:c.704_705del	p.Arg235AsnfsTer23	p.R235Nfs*23	ENST00000407977		235	aGA/a																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029609-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			477	57	304	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	201	503	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508614	106508614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	80	537	1	ENST00000359195.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000359195	NM_002649.2	203	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	94	579	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
FGF3	0	MSKCC	GRCh37	11	69633556	69633556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	26	257	0	ENST00000334134.2:c.146A>G	p.Tyr49Cys	p.Y49C	ENST00000334134	NM_005247.2	49	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501194		P-0030297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	302	545	0	ENST00000269305.4:c.790del	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	264	Cta/ta																																																																														
SOX9	0	MSKCC	GRCh37	17	70120169	70120169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	413	374	0	ENST00000245479.2:c.1171C>T	p.Gln391Ter	p.Q391*	ENST00000245479	NM_000346.3	391	Cag/Tag																																																																														
PTPN11	0	MSKCC	GRCh37	12	112915739	112915740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAAT			P-0030297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	101	493	0	ENST00000351677.2:c.1013_1017dup	p.Asp340Ter	p.D340*	ENST00000351677	NM_002834.3	338	gtg/gTGAATtg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561134	9561134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	97	492	0	ENST00000353224.5:c.648G>C	p.Lys216Asn	p.K216N	ENST00000353224	NM_177990.2	216	aaG/aaC																																																																														
APC	0	MSKCC	GRCh37	5	112136974	112136975	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0030297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	184	421	0	ENST00000257430.4:c.730_731del		p.X244_splice	ENST00000257430	NM_000038.5	244																																																																															
YAP1	0	MSKCC	GRCh37	11	102098222	102098222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	40	525	0	ENST00000282441.5:c.1186G>A	p.Glu396Lys	p.E396K	ENST00000282441	NM_001130145.2	396	Gag/Aag																																																																														
SETD2	0	MSKCC	GRCh37	3	47147512	47147512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	63	576	0	ENST00000409792.3:c.4814A>G	p.Tyr1605Cys	p.Y1605C	ENST00000409792	NM_014159.6	1605	tAt/tGt																																																																														
NF1	0	MSKCC	GRCh37	17	29679274	29679274	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	135	342	0	ENST00000358273.4:c.7458-1G>T		p.X2486_splice	ENST00000358273	NM_001042492.2	2486																																																																															
NEGR1	0	MSKCC	GRCh37	1	72241974	72241974	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	64	299	0	ENST00000357731.5:c.416del	p.Pro139LeufsTer10	p.P139Lfs*10	ENST00000357731	NM_173808.2	139	cCt/ct																																																																														
POLE	0	MSKCC	GRCh37	12	133214715	133214715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	64	515	0	ENST00000320574.5:c.5563G>A	p.Glu1855Lys	p.E1855K	ENST00000320574	NM_006231.2	1855	Gag/Aag																																																																														
CIC	0	MSKCC	GRCh37	19	42799024	42799024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	140	823	0	ENST00000575354.2:c.4508C>G	p.Ser1503Cys	p.S1503C	ENST00000575354	NM_015125.3	1503	tCc/tGc																																																																														
NBN	0	MSKCC	GRCh37	8	90993102	90993102	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	76	397	0	ENST00000265433.3:c.340del	p.Val114LeufsTer7	p.V114Lfs*7	ENST00000265433	NM_002485.4	114	Gtt/tt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518229	8518229	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	143	467	0	ENST00000356435.5:c.1162G>T	p.Asp388Tyr	p.D388Y	ENST00000356435		388	Gat/Tat																																																																														
ATM	0	MSKCC	GRCh37	11	108198374	108198374	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	30	452	0	ENST00000278616.4:c.6978C>A	p.Asn2326Lys	p.N2326K	ENST00000278616	NM_000051.3	2326	aaC/aaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	59	496	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	46	454	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	71	574	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087890	27087911	+	frameshift_variant	Frame_Shift_Del	DEL	CTCGGCCACCCAGTGGCCAGTC	CTCGGCCACCCAGTGGCCAGTC	TG			P-0030307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	93	609	3	ENST00000324856.7:c.2177_2198delinsTG	p.Pro726LeufsTer84	p.P726Lfs*84	ENST00000324856	NM_006015.4	726	cCTCGGCCACCCAGTGGCCAGTCg/cTGg																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50480121	50480121	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	55	469	0	ENST00000394963.4:c.355C>T	p.Arg119Ter	p.R119*	ENST00000394963	NM_003076.4	119	Cga/Tga																																																																														
SOX17	0	MSKCC	GRCh37	8	55371960	55371961	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	46	323	0	ENST00000297316.4:c.653dup	p.Leu219ValfsTer146	p.L219Vfs*146	ENST00000297316	NM_022454.3	217	tac/taCc																																																																														
TP53	0	MSKCC	GRCh37	17	7578259	7578259	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	76	566	0	ENST00000269305.4:c.590T>G	p.Val197Gly	p.V197G	ENST00000269305	NM_001126112.2	197	gTg/gGg																																																																														
ATR	0	MSKCC	GRCh37	3	142185352	142185384	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAATGTGGAACTACTTCCATCAACCTGAAAAAA	TAATGTGGAACTACTTCCATCAACCTGAAAAAA	-			P-0030374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	49	349	0	ENST00000350721.4:c.6688-9_6711del		p.X2230_splice	ENST00000350721	NM_001184.3	2230																																																																															
ATRX	0	MSKCC	GRCh37	X	76940032	76940056	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGCATTATGGCAAAAGTCACAAC	AAAGCATTATGGCAAAAGTCACAAC	-			P-0030374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	55	543	0	ENST00000373344.5:c.692_716del	p.Cys231SerfsTer18	p.C231Sfs*18	ENST00000373344	NM_000489.3	231	tGTTGTGACTTTTGCCATAATGCTTTc/tc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696433	47696433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	257	478	0	ENST00000347630.2:c.390C>G	p.Asp130Glu	p.D130E	ENST00000347630	NM_001007230.1	130	gaC/gaG																																																																														
VHL	0	MSKCC	GRCh37	3	10191587	10191599	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCAGAAAGACC	GTGCAGAAAGACC	-			P-0030377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	341	473	0	ENST00000256474.2:c.580_592del	p.Val194TrpfsTer4	p.V194Wfs*4	ENST00000256474	NM_000551.3	194	GTGCAGAAAGACCtg/tg																																																																														
APC	0	MSKCC	GRCh37	5	112175969	112175969	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	168	264	0	ENST00000257430.4:c.4678G>T	p.Glu1560Ter	p.E1560*	ENST00000257430	NM_000038.5	1560	Gaa/Taa																																																																														
TBX3	0	MSKCC	GRCh37	12	115114116	115114116	+	splice_donor_variant	Splice_Site	DEL	A	A	-			P-0030381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	266	374	0	ENST00000257566.3:c.1099+2del		p.X367_splice	ENST00000257566	NM_016569.3	367																																																																															
FOXA1	0	MSKCC	GRCh37	14	38061847	38061848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTAG			P-0030381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	373	744	0	ENST00000250448.2:c.138_141dup	p.Met48LeufsTer180	p.M48Lfs*180	ENST00000250448	NM_004496.3	47	-/CTAC																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	296	599	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112174204	112174204	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	170	416	0	ENST00000257430.4:c.2913del	p.Asp971GlufsTer9	p.D971Efs*9	ENST00000257430	NM_000038.5	971	gaT/ga																																																																														
TRAF2	0	MSKCC	GRCh37	9	139815623	139815623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	124	562	3	ENST00000247668.2:c.1094G>T	p.Arg365Leu	p.R365L	ENST00000247668	NM_021138.3	365	cGc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	101	310	0				ENST00000310581	NM_198253.2																																																																																
RB1	0	MSKCC	GRCh37	13	49047507	49047507	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	101	305	0	ENST00000267163.4:c.2501C>G	p.Ser834Ter	p.S834*	ENST00000267163	NM_000321.2	834	tCa/tGa																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	85	398	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88670433	88670433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	37	331	0	ENST00000360948.2:c.1253C>T	p.Pro418Leu	p.P418L	ENST00000360948	NM_001012338.2	418	cCt/cTt																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	293	613	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
FAT1	0	MSKCC	GRCh37	4	187549884	187549884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	54	344	3	ENST00000441802.2:c.4357C>T	p.Arg1453Cys	p.R1453C	ENST00000441802	NM_005245.3	1453	Cgt/Tgt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453179	140453179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	108	304	2	ENST00000288602.6:c.1756G>A	p.Glu586Lys	p.E586K	ENST00000288602	NM_004333.4	586	Gaa/Aaa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37866707	37866707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	161	587	0	ENST00000269571.5:c.874G>C	p.Gly292Arg	p.G292R	ENST00000269571		292	Ggc/Cgc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831324	72831324	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	33	284	0	ENST00000268489.5:c.5257C>T	p.Gln1753Ter	p.Q1753*	ENST00000268489	NM_006885.3	1753	Caa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112179500	112179500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	55	350	0	ENST00000257430.4:c.8209G>A	p.Glu2737Lys	p.E2737K	ENST00000257430	NM_000038.5	2737	Gag/Aag																																																																														
IL10	0	MSKCC	GRCh37	1	206941996	206941996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	86	311	0	ENST00000423557.1:c.522G>A	p.Met174Ile	p.M174I	ENST00000423557	NM_000572.2	174	atG/atA																																																																														
BRCA1	0	MSKCC	GRCh37	17	41199660	41199660	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	91	550	0	ENST00000357654.3:c.5467G>A	p.Ala1823Thr	p.A1823T	ENST00000357654	NM_007294.3	1823	Gca/Aca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097595	27097610	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTTTGGTTATACAGG	GGTTTGGTTATACAGG	-			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	191	377	0	ENST00000324856.7:c.3199-15_3199del		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																																																															
MYCL1	0	MSKCC	GRCh37	1	40366765	40366781	+	protein_altering_variant	In_Frame_Del	DEL	AGCGAGCCGGTCGCTCA	AGCGAGCCGGTCGCTCA	CT			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	66	434	2	ENST00000397332.2:c.416_432delinsAG	p.Val139_Ala144delinsGlu	p.V139_A144delinsE	ENST00000397332	NM_001033082.2	139	gTGAGCGACCGGCTCGCT/gAG																																																																														
H3F3A	0	MSKCC	GRCh37	1	226252059	226252059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	27	246	0	ENST00000366813.1:c.7C>T	p.Arg3Cys	p.R3C	ENST00000366813		3	Cgt/Tgt																																																																														
RET	0	MSKCC	GRCh37	10	43622099	43622099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	68	429	1	ENST00000355710.3:c.3116C>T	p.Pro1039Leu	p.P1039L	ENST00000355710	NM_020975.4	1039	cCg/cTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348736	89348736	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	77	783	0	ENST00000301030.4:c.4214C>G	p.Ser1405Cys	p.S1405C	ENST00000301030	NM_001256183.1	1405	tCt/tGt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351863	89351863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	123	761	2	ENST00000301030.4:c.1087G>A	p.Asp363Asn	p.D363N	ENST00000301030	NM_001256183.1	363	Gac/Aac																																																																														
FANCA	0	MSKCC	GRCh37	16	89836363	89836371	+	inframe_deletion	In_Frame_Del	DEL	ACCTGGACT	ACCTGGACT	-			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	75	538	0	ENST00000389301.3:c.2378_2386del	p.Glu793_Ser796delinsAla	p.E793_S796delinsA	ENST00000389301	NM_000135.2	793	gAGTCCAGGTct/gct																																																																														
CD79B	0	MSKCC	GRCh37	17	62006636	62006636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	75	499	2	ENST00000392795.3:c.643C>T	p.Arg215Trp	p.R215W	ENST00000392795	NM_001039933.1	215	Cgg/Tgg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25464475	25464475	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	73	454	0	ENST00000264709.3:c.2038A>T	p.Lys680Ter	p.K680*	ENST00000264709	NM_175629.2	680	Aag/Tag																																																																														
SRC	0	MSKCC	GRCh37	20	36012689	36012689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	28	134	3	ENST00000358208.4:c.133G>A	p.Asp45Asn	p.D45N	ENST00000358208		45	Gac/Aac																																																																														
FAT1	0	MSKCC	GRCh37	4	187628296	187628296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	162	545	0	ENST00000441802.2:c.2686G>A	p.Glu896Lys	p.E896K	ENST00000441802	NM_005245.3	896	Gag/Aag																																																																														
DAXX	0	MSKCC	GRCh37	6	33288314	33288314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	50	406	0	ENST00000374542.5:c.1094G>T	p.Arg365Leu	p.R365L	ENST00000374542	NM_001141970.1	365	cGg/cTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38148058	38148058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	171	634	0	ENST00000317025.8:c.3053C>G	p.Pro1018Arg	p.P1018R	ENST00000317025	NM_023034.1	1018	cCt/cGt																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029521	14029521	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202186213		P-0030438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	104	381	0	ENST00000311895.7:c.1732G>A	p.Val578Met	p.V578M	ENST00000311895	NM_005236.2	578	Gtg/Atg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696638	47696638	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	119	553	0	ENST00000347630.2:c.310T>A	p.Phe104Ile	p.F104I	ENST00000347630	NM_001007230.1	104	Ttc/Atc																																																																														
FGF4	0	MSKCC	GRCh37	11	69588255	69588255	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0030438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	38	397	0	ENST00000168712.1:c.445-2A>T		p.X149_splice	ENST00000168712	NM_002007.2	149																																																																															
ZFHX3	0	MSKCC	GRCh37	16	72832015	72832015	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	211	637	0	ENST00000268489.5:c.4566del	p.Arg1523GlufsTer17	p.R1523Efs*17	ENST00000268489	NM_006885.3	1522	aaG/aa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44945146	44945146	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	170	299	0	ENST00000377967.4:c.3470T>G	p.Ile1157Arg	p.I1157R	ENST00000377967	NM_021140.2	1157	aTa/aGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0030442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	361	450	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7579348	7579349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	312	647	0	ENST00000269305.4:c.338dup	p.His115AlafsTer34	p.H115Afs*34	ENST00000269305	NM_001126112.2	113	ttc/ttTc																																																																														
KDR	0	MSKCC	GRCh37	4	55972909	55972909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	242	624	1	ENST00000263923.4:c.1481G>T	p.Gly494Val	p.G494V	ENST00000263923	NM_002253.2	494	gGa/gTa																																																																														
ABL1	0	MSKCC	GRCh37	9	133759622	133759623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	300	709	0	ENST00000318560.5:c.1950dup	p.Asp652GlyfsTer4	p.D652Gfs*4	ENST00000318560	NM_005157.4	649	acc/aCcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0030443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	28	418	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
SPOP	0	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	85	515	0	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118366578	118366578	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	58	447	0	ENST00000534358.1:c.5528del	p.Pro1843LeufsTer10	p.P1843Lfs*10	ENST00000534358	NM_005933.3	1843	Cct/ct																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0030457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	181	518	7	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	59	513	5	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151896442	151896442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	41	421	0	ENST00000262189.6:c.4195A>G	p.Met1399Val	p.M1399V	ENST00000262189	NM_170606.2	1399	Atg/Gtg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	173	236	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	602	696	0	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097665	27097665	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	437	785	0	ENST00000324856.7:c.3254C>G	p.Ser1085Ter	p.S1085*	ENST00000324856	NM_006015.4	1085	tCa/tGa																																																																														
FLT4	0	MSKCC	GRCh37	5	180048118	180048118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	299	862	0	ENST00000261937.6:c.2155G>C	p.Glu719Gln	p.E719Q	ENST00000261937	NM_182925.4	719	Gag/Cag																																																																														
SPEN	0	MSKCC	GRCh37	1	16264106	16264106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1263	158	901	0	ENST00000375759.3:c.10475C>T	p.Ser3492Phe	p.S3492F	ENST00000375759	NM_015001.2	3492	tCc/tTc																																																																														
POLE	0	MSKCC	GRCh37	12	133240676	133240676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	347	647	1	ENST00000320574.5:c.2620G>A	p.Glu874Lys	p.E874K	ENST00000320574	NM_006231.2	874	Gaa/Aaa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351675	89351675	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	92	830	0	ENST00000301030.4:c.1275G>C	p.Lys425Asn	p.K425N	ENST00000301030	NM_001256183.1	425	aaG/aaC																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575111	48575111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	36	386	0	ENST00000342988.3:c.305C>G	p.Pro102Arg	p.P102R	ENST00000342988	NM_005359.5	102	cCt/cGt																																																																														
STK11	0	MSKCC	GRCh37	19	1223033	1223421	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCGAGCCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTACTTGGAGGACCTGCACGGCGCGGACGAGGACGAGGACCTCTTCGACATCGAGGATGACATCATCTACACTCAGGACTTCACGGTGCCCGGTGAGTCTGGCGGGGGCCCCTGCCCGGCTCTGCTGACTCGGCCAGGATGTCCCACGGGAGCAGGGTGCCTGCCTGTCTGCAACAAGGACAGCTTCTGCCCTCTGGTGGCCAATCCCACGTCCCCAAAGCCTCCAGCCCACCTGCAGGCTGCCTCCGCCCTGCGGGCCGCTGGGACATGGCTGAAAGGTGTGGGGTCAGCGGGGGCACCAGCCCAGGCCTGTCTGGCCAGGAGGGTTCCTCAGGCGTCTCT	CCGAGCCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTACTTGGAGGACCTGCACGGCGCGGACGAGGACGAGGACCTCTTCGACATCGAGGATGACATCATCTACACTCAGGACTTCACGGTGCCCGGTGAGTCTGGCGGGGGCCCCTGCCCGGCTCTGCTGACTCGGCCAGGATGTCCCACGGGAGCAGGGTGCCTGCCTGTCTGCAACAAGGACAGCTTCTGCCCTCTGGTGGCCAATCCCACGTCCCCAAAGCCTCCAGCCCACCTGCAGGCTGCCTCCGCCCTGCGGGCCGCTGGGACATGGCTGAAAGGTGTGGGGTCAGCGGGGGCACCAGCCCAGGCCTGTCTGGCCAGGAGGGTTCCTCAGGCGTCTCT	-			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	237	795	0	ENST00000326873.7:c.973_1108+253del		p.X325_splice	ENST00000326873	NM_000455.4	325																																																																															
AKT2	0	MSKCC	GRCh37	19	40741878	40741879	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1217	128	769	0	ENST00000392038.2:c.1093_1094delinsTT	p.Glu365Leu	p.E365L	ENST00000392038	NM_001626.4	365	GAa/TTa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99162467	99162467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	369	481	0	ENST00000074304.5:c.985A>G	p.Lys329Glu	p.K329E	ENST00000074304	NM_001134224.1	329	Aaa/Gaa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36231792	36231792	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	453	745	0	ENST00000300305.3:c.592G>C	p.Asp198His	p.D198H	ENST00000300305		198	Gat/Cat																																																																														
DROSHA	0	MSKCC	GRCh37	5	31451648	31451648	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	350	426	0	ENST00000344624.3:c.2674C>G	p.Leu892Val	p.L892V	ENST00000344624		892	Ctg/Gtg																																																																														
MDC1	0	MSKCC	GRCh37	6	30681642	30681642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	186	520	0	ENST00000376406.3:c.455G>C	p.Arg152Thr	p.R152T	ENST00000376406	NM_014641.2	152	aGa/aCa																																																																														
CARD11	0	MSKCC	GRCh37	7	2949757	2949757	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	391	798	0	ENST00000396946.4:c.3187G>C	p.Asp1063His	p.D1063H	ENST00000396946	NM_032415.4	1063	Gac/Cac																																																																														
ATRX	0	MSKCC	GRCh37	X	76944379	76944379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	28	303	0	ENST00000373344.5:c.526C>G	p.Gln176Glu	p.Q176E	ENST00000373344	NM_000489.3	176	Caa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	366	616	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0030527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	163	324	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67654615	67654615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	237	461	0	ENST00000264010.4:c.1102C>T	p.Arg368Cys	p.R368C	ENST00000264010	NM_006565.3	368	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175594	112175594	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	124	361	0	ENST00000257430.4:c.4303delA	p.Arg1435GlufsTer38	p.R1435Efs*38	ENST00000257430	NM_000038.5	1435	Aga/ga																																																																														
MDC1	0	MSKCC	GRCh37	6	30671543	30671543	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	225	662	0	ENST00000376406.3:c.5417A>C	p.Lys1806Thr	p.K1806T	ENST00000376406	NM_014641.2	1806	aAg/aCg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002221-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			304	230	360	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002221-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			229	198	333	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0002221-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			263	186	299	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
NSD1	0	MSKCC	GRCh37	5	176720839	176720839	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002221-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			257	200	332	0	ENST00000439151.2:c.6470G>A	p.Trp2157Ter	p.W2157*	ENST00000439151	NM_022455.4	2157	tGg/tAg																																																																														
MDC1	0	MSKCC	GRCh37	6	30673161	30673161	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002221-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			419	248	523	0	ENST00000376406.3:c.3799C>T	p.Gln1267Ter	p.Q1267*	ENST00000376406	NM_014641.2	1267	Cag/Tag																																																																														
MEN1	0	MSKCC	GRCh37	11	64574572	64574572	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0002221-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			107	332	529	1	ENST00000337652.1:c.840-2A>T		p.X280_splice	ENST00000337652	NM_130803.2	280																																																																															
FOXA1	0	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015960-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	102	714	0	ENST00000250448.2:c.676G>A	p.Asp226Asn	p.D226N	ENST00000250448	NM_004496.3	226	Gac/Aac																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589606	67589611	+	inframe_deletion	In_Frame_Del	DEL	CAAGAA	CAAGAA	-			P-0015960-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	75	366	0	ENST00000274335.5:c.1369_1374del	p.Gln457_Glu458del	p.Q457_E458del	ENST00000274335		457	CAAGAA/-																																																																														
TEK	0	MSKCC	GRCh37	9	27202925	27202925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015960-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			740	72	561	0	ENST00000380036.4:c.2017C>T	p.Arg673Cys	p.R673C	ENST00000380036	NM_000459.3	673	Cgt/Tgt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118352464	118352464	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015960-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	38	522	0	ENST00000534358.1:c.3669T>A	p.Ser1223Arg	p.S1223R	ENST00000534358	NM_005933.3	1223	agT/agA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	186	339	0				ENST00000310581	NM_198253.2																																																																																
STAG2	0	MSKCC	GRCh37	X	123197842	123197842	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	280	349	0	ENST00000218089.9:c.1966C>T	p.Gln656Ter	p.Q656*	ENST00000218089	NM_001042749.1	656	Caa/Taa																																																																														
TP63	0	MSKCC	GRCh37	3	189582195	189582195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	78	463	0	ENST00000264731.3:c.754G>A	p.Glu252Lys	p.E252K	ENST00000264731	NM_003722.4	252	Gaa/Aaa																																																																														
ELF3	0	MSKCC	GRCh37	1	201982403	201982404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	809	881	0	ENST00000359651.3:c.783dupC	p.Glu262ArgfsTer39	p.E262Rfs*39	ENST00000359651		261	ctc/ctCc																																																																														
CCND2	0	MSKCC	GRCh37	12	4409107	4409107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3217921		P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	118	527	0	ENST00000261254.3:c.802G>A	p.Gly268Arg	p.G268R	ENST00000261254	NM_001759.3	268	Gga/Aga																																																																														
MGA	0	MSKCC	GRCh37	15	42003254	42003254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	174	744	0	ENST00000219905.7:c.2791C>T	p.His931Tyr	p.H931Y	ENST00000219905	NM_001164273.1	931	Cat/Tat																																																																														
MGA	0	MSKCC	GRCh37	15	42059086	42059086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	244	422	2	ENST00000219905.7:c.8806G>T	p.Asp2936Tyr	p.D2936Y	ENST00000219905	NM_001164273.1	2936	Gat/Tat																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9892152	9892152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	150	724	4	ENST00000330684.3:c.2338C>A	p.Leu780Ile	p.L780I	ENST00000330684	NM_001134407.1	780	Ctt/Att																																																																														
NUP93	0	MSKCC	GRCh37	16	56872979	56872979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	168	251	0	ENST00000308159.5:c.2134G>C	p.Asp712His	p.D712H	ENST00000308159	NM_014669.4	712	Gat/Cat																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11145770	11145770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	154	758	1	ENST00000344626.4:c.4132G>A	p.Asp1378Asn	p.D1378N	ENST00000344626	NM_003072.3	1378	Gac/Aac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212120	36212120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	37	523	0	ENST00000222270.7:c.1871C>A	p.Ala624Asp	p.A624D	ENST00000222270	NM_014727.1	624	gCc/gAc																																																																														
XPO1	0	MSKCC	GRCh37	2	61753572	61753572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	282	658	2	ENST00000401558.2:c.211C>A	p.Gln71Lys	p.Q71K	ENST00000401558	NM_003400.3	71	Cag/Aag																																																																														
SRC	0	MSKCC	GRCh37	20	36030918	36030918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	149	700	0	ENST00000358208.4:c.1197G>C	p.Glu399Asp	p.E399D	ENST00000358208		399	gaG/gaC																																																																														
APC	0	MSKCC	GRCh37	5	112178786	112178786	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs33941929		P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	230	534	0	ENST00000257430.4:c.7495G>C	p.Val2499Leu	p.V2499L	ENST00000257430	NM_000038.5	2499	Gtt/Ctt																																																																														
NSD1	0	MSKCC	GRCh37	5	176721105	176721105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	77	506	0	ENST00000439151.2:c.6736C>T	p.Gln2246Ter	p.Q2246*	ENST00000439151	NM_022455.4	2246	Cag/Tag																																																																														
ROS1	0	MSKCC	GRCh37	6	117631349	117631349	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	124	523	0	ENST00000368508.3:c.6329A>C	p.Tyr2110Ser	p.Y2110S	ENST00000368508	NM_002944.2	2110	tAt/tCt																																																																														
ESR1	0	MSKCC	GRCh37	6	152201851	152201851	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	139	579	0	ENST00000206249.3:c.705G>C	p.Lys235Asn	p.K235N	ENST00000206249	NM_000125.3	235	aaG/aaC																																																																														
ARID1B	0	MSKCC	GRCh37	6	157256609	157256609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	107	409	0	ENST00000346085.5:c.1936C>G	p.Gln646Glu	p.Q646E	ENST00000346085	NM_020732.3	646	Cag/Gag																																																																														
PREX2	0	MSKCC	GRCh37	8	68931901	68931901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	185	725	0	ENST00000288368.4:c.331C>T	p.His111Tyr	p.H111Y	ENST00000288368	NM_024870.2	111	Cac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027746-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			665	164	640	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0027746-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	87	521	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
MYD88	0	MSKCC	GRCh37	3	38180312	38180312	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027746-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	81	572	0	ENST00000396334.3:c.160A>G	p.Thr54Ala	p.T54A	ENST00000396334	NM_002468.4	54	Aca/Gca																																																																														
APC	0	MSKCC	GRCh37	5	112174833	112174833	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027746-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	47	434	0	ENST00000257430.4:c.3542T>A	p.Leu1181Ter	p.L1181*	ENST00000257430	NM_000038.5	1181	tTa/tAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028897-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	410	557	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1207146	1207146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028897-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			564	350	741	0	ENST00000326873.7:c.234G>T	p.Lys78Asn	p.K78N	ENST00000326873	NM_000455.4	78	aaG/aaT																																																																														
MTOR	0	MSKCC	GRCh37	1	11264660	11264660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028897-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	123	549	0	ENST00000361445.4:c.3902G>T	p.Arg1301Leu	p.R1301L	ENST00000361445	NM_004958.3	1301	cGc/cTc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793440	242793440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028897-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			540	219	560	1	ENST00000334409.5:c.637C>G	p.Pro213Ala	p.P213A	ENST00000334409	NM_005018.2	213	Ccc/Gcc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217108	66217108	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028897-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			594	303	429	0	ENST00000273854.3:c.2507G>C	p.Arg836Thr	p.R836T	ENST00000273854	NM_004439.5	836	aGg/aCg																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15808651	15808651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028897-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			725	138	625	0	ENST00000307771.7:c.33G>C	p.Glu11Asp	p.E11D	ENST00000307771	NM_005089.3	11	gaG/gaC																																																																														
ATM	0	MSKCC	GRCh37	11	108168013	108168013	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0028897-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	139	297	0	ENST00000278616.4:c.4910-1G>A		p.X1637_splice	ENST00000278616	NM_000051.3	1637																																																																															
SF3B1	0	MSKCC	GRCh37	2	198267393	198267393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	66	599	0	ENST00000335508.6:c.1964A>G	p.Lys655Arg	p.K655R	ENST00000335508	NM_012433.2	655	aAg/aGg																																																																														
MET	0	MSKCC	GRCh37	7	116411882	116411898	+	splice_region_variant,intron_variant	Splice_Region	DEL	TTTCTTTCTCTCTGTTT	TTTCTTTCTCTCTGTTT	-			P-0029472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	244	902	0	ENST00000397752.3:c.2888-20_2888-4del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
MDC1	0	MSKCC	GRCh37	6	30675438	30675438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			302	252	456	1	ENST00000376406.3:c.2918C>T	p.Ala973Val	p.A973V	ENST00000376406	NM_014641.2	973	gCg/gTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			482	168	644	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153268144	153268144	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs920052554		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			449	80	307	0	ENST00000281708.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000281708	NM_033632.3	222	Cga/Tga																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25457242	25457242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147001633		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			492	130	504	1	ENST00000264709.3:c.2645G>A	p.Arg882His	p.R882H	ENST00000264709	NM_175629.2	882	cGc/cAc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			441	105	402	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			378	75	279	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
TP63	0	MSKCC	GRCh37	3	189582168	189582168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			520	136	435	0	ENST00000264731.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000264731	NM_003722.4	243	Cgg/Tgg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636818	8636818	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146973770		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			470	112	391	0	ENST00000356435.5:c.91G>A	p.Val31Ile	p.V31I	ENST00000356435		31	Gtt/Att																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45651264	45651264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			592	155	568	0	ENST00000407780.3:c.761C>T	p.Ala254Val	p.A254V	ENST00000407780	NM_001283052.1	254	gCg/gTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187627774	187627774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			575	117	452	0	ENST00000441802.2:c.3208C>T	p.Arg1070Ter	p.R1070*	ENST00000441802	NM_005245.3	1070	Cga/Tga																																																																														
POLD1	0	MSKCC	GRCh37	19	50905516	50905516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			560	123	694	2	ENST00000440232.2:c.644C>T	p.Ala215Val	p.A215V	ENST00000440232	NM_002691.3	215	gCg/gTg																																																																														
RHOA	0	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			652	160	618	0	ENST00000418115.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000418115	NM_001664.2	42	tAt/tGt																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793677	89793677	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			525	123	375	0	ENST00000336032.3:c.752del	p.Lys251SerfsTer14	p.K251Sfs*14	ENST00000336032	NM_006813.2	249	gAa/ga																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508401	106508401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			233	52	260	0	ENST00000359195.3:c.395C>T	p.Pro132Leu	p.P132L	ENST00000359195	NM_002649.2	132	cCg/cTg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			57	13	57	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																														
APC	0	MSKCC	GRCh37	5	112173837	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			390	95	380	0	ENST00000257430.4:c.2547_2548del	p.Asp849GlufsTer62	p.D849Efs*62	ENST00000257430	NM_000038.5	849	gAT/g																																																																														
APC	0	MSKCC	GRCh37	5	112175696	112175696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			375	78	355	1	ENST00000257430.4:c.4405C>T	p.Gln1469Ter	p.Q1469*	ENST00000257430	NM_000038.5	1469	Caa/Taa																																																																														
BCL2L1	0	MSKCC	GRCh37	20	30253759	30253759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			377	134	418	0	ENST00000307677.4:c.695G>A	p.Arg232Gln	p.R232Q	ENST00000307677	NM_138578.1	232	cGg/cAg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89456460	89456460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			434	98	318	0	ENST00000336596.2:c.1636G>A	p.Ala546Thr	p.A546T	ENST00000336596	NM_005233.5	546	Gcc/Acc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164863	36164863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			610	143	675	3	ENST00000300305.3:c.1012G>A	p.Ala338Thr	p.A338T	ENST00000300305		338	Gcg/Acg																																																																														
TET2	54790	MSKCC	GRCh37	4	106193850	106193850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			426	82	358	0	ENST00000380013.4:c.4317del	p.Lys1439AsnfsTer9	p.K1439Nfs*9	ENST00000380013	NM_001127208.2	1438	Aaa/aa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741761	145741761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			524	135	623	0	ENST00000428558.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000428558	NM_004260.3	248	Cgt/Tgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433388	49433388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			604	151	645	1	ENST00000301067.7:c.8059C>T	p.Arg2687Ter	p.R2687*	ENST00000301067	NM_003482.3	2687	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			519	103	636	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943749	9943749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			439	114	486	1	ENST00000330684.3:c.1192G>A	p.Asp398Asn	p.D398N	ENST00000330684	NM_001134407.1	398	Gac/Aac																																																																														
BCOR	0	MSKCC	GRCh37	X	39932819	39932819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			222	131	261	1	ENST00000378444.4:c.1780G>A	p.Val594Ile	p.V594I	ENST00000378444	NM_001123385.1	594	Gtt/Att																																																																														
NTHL1	0	MSKCC	GRCh37	16	2090156	2090156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148474733		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			614	147	645	3	ENST00000219066.1:c.793G>A	p.Ala265Thr	p.A265T	ENST00000219066	NM_002528.5	265	Gcc/Acc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			479	102	616	7	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																														
POLD1	0	MSKCC	GRCh37	19	50909730	50909730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			607	139	678	0	ENST00000440232.2:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000440232	NM_002691.3	484	Gag/Aag																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737400	145737400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			533	141	595	1	ENST00000428558.2:c.3287G>A	p.Arg1096His	p.R1096H	ENST00000428558	NM_004260.3	1096	cGc/cAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023778	27023778	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			393	110	343	0	ENST00000324856.7:c.884T>G	p.Leu295Arg	p.L295R	ENST00000324856	NM_006015.4	295	cTc/cGc																																																																														
CARD11	0	MSKCC	GRCh37	7	2954991	2954991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			431	116	491	1	ENST00000396946.4:c.2719G>A	p.Glu907Lys	p.E907K	ENST00000396946	NM_032415.4	907	Gag/Aag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696748	47696748	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			285	88	249	0	ENST00000347630.2:c.201-1G>A		p.X67_splice	ENST00000347630	NM_001007230.1	67																																																																															
STK11	0	MSKCC	GRCh37	19	1221294	1221294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			566	149	618	1	ENST00000326873.7:c.817G>A	p.Ala273Thr	p.A273T	ENST00000326873	NM_000455.4	273	Gcc/Acc																																																																														
SPEN	0	MSKCC	GRCh37	1	16199618	16199618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			465	111	390	0	ENST00000375759.3:c.391C>T	p.Arg131Trp	p.R131W	ENST00000375759	NM_015001.2	131	Cgg/Tgg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64128706	64128706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			478	133	508	0	ENST00000334205.4:c.563C>T	p.Thr188Met	p.T188M	ENST00000334205	NM_003942.2	188	aCg/aTg																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67201736	67201736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			437	107	482	0	ENST00000312629.5:c.1037G>T	p.Arg346Met	p.R346M	ENST00000312629	NM_003952.2	346	aGg/aTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118377145	118377145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			378	63	348	0	ENST00000534358.1:c.10538C>G	p.Thr3513Ser	p.T3513S	ENST00000534358	NM_005933.3	3513	aCc/aGc																																																																														
ARID2	0	MSKCC	GRCh37	12	46244479	46244479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			515	119	424	0	ENST00000334344.6:c.2573C>T	p.Ala858Val	p.A858V	ENST00000334344	NM_152641.2	858	gCa/gTa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103506134	103506134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			434	116	355	0	ENST00000355739.4:c.292G>A	p.Ala98Thr	p.A98T	ENST00000355739	NM_000123.3	98	Gcg/Acg																																																																														
MGA	0	MSKCC	GRCh37	15	42041327	42041327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			482	94	438	0	ENST00000219905.7:c.5522G>A	p.Arg1841Gln	p.R1841Q	ENST00000219905	NM_001164273.1	1841	cGg/cAg																																																																														
AXIN1	0	MSKCC	GRCh37	16	348232	348232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			526	137	616	0	ENST00000262320.3:c.1274G>A	p.Gly425Asp	p.G425D	ENST00000262320	NM_003502.3	425	gGc/gAc																																																																														
SLX4	0	MSKCC	GRCh37	16	3632393	3632393	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			574	144	690	0	ENST00000294008.3:c.5455C>T	p.Gln1819Ter	p.Q1819*	ENST00000294008	NM_032444.2	1819	Cag/Tag																																																																														
SLX4	0	MSKCC	GRCh37	16	3656526	3656526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199912910		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			690	162	586	1	ENST00000294008.3:c.709C>T	p.Arg237Trp	p.R237W	ENST00000294008	NM_032444.2	237	Cgg/Tgg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779692	3779692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			450	90	501	1	ENST00000262367.5:c.5356C>T	p.Arg1786Cys	p.R1786C	ENST00000262367	NM_004380.2	1786	Cgc/Tgc																																																																														
NUP93	0	MSKCC	GRCh37	16	56875731	56875731	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77860880		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			430	120	397	0	ENST00000308159.5:c.2335G>A	p.Glu779Lys	p.E779K	ENST00000308159	NM_014669.4	779	Gag/Aag																																																																														
PLCG2	0	MSKCC	GRCh37	16	81946260	81946260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			479	116	588	0	ENST00000359376.3:c.1993C>T	p.Arg665Trp	p.R665W	ENST00000359376	NM_002661.3	665	Cgg/Tgg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346855	89346855	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			211	57	298	0	ENST00000301030.4:c.6095C>T	p.Pro2032Leu	p.P2032L	ENST00000301030	NM_001256183.1	2032	cCg/cTg																																																																														
PPM1D	0	MSKCC	GRCh37	17	58711219	58711219	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			630	126	400	0	ENST00000305921.3:c.707T>C	p.Met236Thr	p.M236T	ENST00000305921	NM_003620.3	236	aTg/aCg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78936325	78936325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			469	116	602	0	ENST00000306801.3:c.3757G>A	p.Val1253Met	p.V1253M	ENST00000306801	NM_020761.2	1253	Gtg/Atg																																																																														
BABAM1	0	MSKCC	GRCh37	19	17389780	17389780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			568	150	711	1	ENST00000359435.4:c.913C>T	p.Arg305Trp	p.R305W	ENST00000359435	NM_001033549.1	305	Cgg/Tgg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228119	36228119	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201885107		P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			557	138	606	1	ENST00000222270.7:c.7505C>T	p.Pro2502Leu	p.P2502L	ENST00000222270	NM_014727.1	2502	cCg/cTg																																																																														
MSH6	0	MSKCC	GRCh37	2	48027688	48027691	+	frameshift_variant	Frame_Shift_Del	DEL	ATTG	ATTG	-			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			154	67	152	0	ENST00000234420.5:c.2569_2572del	p.Asp857PhefsTer10	p.D857Ffs*10	ENST00000234420	NM_000179.2	856	ATTGat/at																																																																														
INPP4A	0	MSKCC	GRCh37	2	99189367	99189367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			581	128	509	0	ENST00000074304.5:c.2623G>A	p.Asp875Asn	p.D875N	ENST00000074304	NM_001134224.1	875	Gac/Aac																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41275753	41275753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			536	106	454	0	ENST00000349496.5:c.1648C>T	p.Arg550Cys	p.R550C	ENST00000349496	NM_001904.3	550	Cgt/Tgt																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185190866	185190866	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			643	145	579	2	ENST00000265026.3:c.1747C>T	p.Arg583Ter	p.R583*	ENST00000265026	NM_004721.4	583	Cga/Tga																																																																														
TP63	0	MSKCC	GRCh37	3	189526115	189526115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			636	133	511	0	ENST00000264731.3:c.379G>A	p.Gly127Ser	p.G127S	ENST00000264731	NM_003722.4	127	Ggc/Agc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1956969	1956969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			457	131	553	0	ENST00000382891.5:c.2420C>T	p.Ala807Val	p.A807V	ENST00000382891	NM_133335.3	807	gCc/gTc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56170877	56170877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			335	58	270	0	ENST00000399503.3:c.1705G>A	p.Val569Ile	p.V569I	ENST00000399503	NM_005921.1	569	Gtt/Att																																																																														
MSH3	0	MSKCC	GRCh37	5	80088584	80088585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			565	122	369	0	ENST00000265081.6:c.2582dup	p.Asn861LysfsTer8	p.N861Kfs*8	ENST00000265081	NM_002439.4	859	ata/atAa																																																																														
MDC1	0	MSKCC	GRCh37	6	30681924	30681924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			324	201	370	0	ENST00000376406.3:c.173G>A	p.Arg58Gln	p.R58Q	ENST00000376406	NM_014641.2	58	cGa/cAa																																																																														
TAP1	0	MSKCC	GRCh37	6	32814921	32814921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			526	301	551	0	ENST00000354258.4:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000354258	NM_000593.5	715	cGa/cAa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157222613	157222613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			534	109	454	0	ENST00000346085.5:c.1880C>T	p.Ala627Val	p.A627V	ENST00000346085	NM_020732.3	627	gCg/gTg																																																																														
FGFR1	0	MSKCC	GRCh37	8	38314898	38314898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			371	90	411	0	ENST00000425967.3:c.166C>T	p.Pro56Ser	p.P56S	ENST00000425967	NM_001174067.1	56	Ccg/Tcg																																																																														
PREX2	0	MSKCC	GRCh37	8	69046377	69046377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			484	96	453	0	ENST00000288368.4:c.3850G>A	p.Ala1284Thr	p.A1284T	ENST00000288368	NM_024870.2	1284	Gcg/Acg																																																																														
RXRA	0	MSKCC	GRCh37	9	137313595	137313595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			573	133	728	1	ENST00000481739.1:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000481739	NM_002957.4	285	cGg/cAg																																																																														
MED12	0	MSKCC	GRCh37	X	70357061	70357061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			255	132	341	2	ENST00000374080.3:c.5576G>A	p.Arg1859His	p.R1859H	ENST00000374080		1859	cGt/cAt																																																																														
MED12	0	MSKCC	GRCh37	X	70360599	70360600	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCAGCAA			P-0029495-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			194	19	166	0	ENST00000374080.3:c.6174_6182dup	p.Gln2074_Gln2076dup	p.Q2074_Q2076dup	ENST00000374080		2074	-/CAGCAGCAA																																																																														
DROSHA	0	MSKCC	GRCh37	5	31409382	31409382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029846-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	98	395	0	ENST00000344624.3:c.3725A>G	p.Asn1242Ser	p.N1242S	ENST00000344624		1242	aAt/aGt																																																																														
RBM10	0	MSKCC	GRCh37	X	47041244	47041245	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0029846-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	168	322	0	ENST00000329236.7:c.1438_1439del	p.Gln480GlyfsTer18	p.Q480Gfs*18	ENST00000329236	NM_001204466.1	480	CAg/g																																																																														
MET	0	MSKCC	GRCh37	7	116411866	116411893	+	intron_variant	Intron	DEL	CGTCTTTAACAAGCTCTTTCTTTCTCTC	CGTCTTTAACAAGCTCTTTCTTTCTCTC	G			P-0029846-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			782	249	786	0	ENST00000397752.3:c.2888-37_2888-10delinsG		p.*963*	ENST00000397752	NM_000245.2	963																																																																															
ARID1A	0	MSKCC	GRCh37	1	27087944	27087944	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	106	494	0	ENST00000324856.7:c.2231C>G	p.Ser744Ter	p.S744*	ENST00000324856	NM_006015.4	744	tCa/tGa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	115	479	0	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430824	78430824	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	163	449	0	ENST00000370768.2:c.565G>T	p.Glu189Ter	p.E189*	ENST00000370768	NM_003902.3	189	Gaa/Taa																																																																														
PGR	0	MSKCC	GRCh37	11	100999521	100999521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	271	734	0	ENST00000325455.5:c.281G>A	p.Arg94Lys	p.R94K	ENST00000325455	NM_001202474.3	94	aGg/aAg																																																																														
ATM	0	MSKCC	GRCh37	11	108142036	108142036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	139	461	0	ENST00000278616.4:c.2980G>C	p.Val994Leu	p.V994L	ENST00000278616	NM_000051.3	994	Gtc/Ctc																																																																														
CBL	0	MSKCC	GRCh37	11	119170263	119170263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	92	272	0	ENST00000264033.4:c.2493C>G	p.Ile831Met	p.I831M	ENST00000264033	NM_005188.3	831	atC/atG																																																																														
CCND2	0	MSKCC	GRCh37	12	4383225	4383225	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	93	309	0	ENST00000261254.3:c.19G>C	p.Glu7Gln	p.E7Q	ENST00000261254	NM_001759.3	7	Gag/Cag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440430	49440431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	194	558	0	ENST00000301067.7:c.4379dupC	p.Leu1461ThrfsTer30	p.L1461Tfs*30	ENST00000301067	NM_003482.3	1460	cca/ccCa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103518091	103518091	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	61	344	0	ENST00000355739.4:c.2029C>G	p.Pro677Ala	p.P677A	ENST00000355739	NM_000123.3	677	Ccc/Gcc																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871608	35871608	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	20	193	0	ENST00000216797.5:c.898G>C	p.Glu300Gln	p.E300Q	ENST00000216797	NM_020529.2	300	Gag/Cag																																																																														
MGA	0	MSKCC	GRCh37	15	42049996	42049996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	62	326	0	ENST00000219905.7:c.7150C>T	p.His2384Tyr	p.H2384Y	ENST00000219905	NM_001164273.1	2384	Cac/Tac																																																																														
MGA	0	MSKCC	GRCh37	15	42054533	42054533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	96	314	2	ENST00000219905.7:c.7717C>G	p.Leu2573Val	p.L2573V	ENST00000219905	NM_001164273.1	2573	Ctt/Gtt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43701865	43701865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	87	257	0	ENST00000382044.4:c.5380G>A	p.Glu1794Lys	p.E1794K	ENST00000382044	NM_001141980.1	1794	Gaa/Aaa																																																																														
TSC2	0	MSKCC	GRCh37	16	2134616	2134616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	193	625	3	ENST00000219476.3:c.4393G>A	p.Asp1465Asn	p.D1465N	ENST00000219476	NM_000548.3	1465	Gac/Aac																																																																														
MAPK3	0	MSKCC	GRCh37	16	30133263	30133263	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	96	478	0	ENST00000263025.4:c.235C>G	p.Gln79Glu	p.Q79E	ENST00000263025	NM_002746.2	79	Cag/Gag																																																																														
CTCF	0	MSKCC	GRCh37	16	67671689	67671689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	155	485	0	ENST00000264010.4:c.2098G>A	p.Glu700Lys	p.E700K	ENST00000264010	NM_006565.3	700	Gag/Aag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830412	72830412	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	93	269	0	ENST00000268489.5:c.6169C>T	p.Gln2057Ter	p.Q2057*	ENST00000268489	NM_006885.3	2057	Cag/Tag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349620	89349620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	207	657	0	ENST00000301030.4:c.3330G>C	p.Glu1110Asp	p.E1110D	ENST00000301030	NM_001256183.1	1110	gaG/gaC																																																																														
BRCA1	0	MSKCC	GRCh37	17	41223192	41223192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	155	479	0	ENST00000357654.3:c.4739C>T	p.Ser1580Phe	p.S1580F	ENST00000357654	NM_007294.3	1580	tCt/tTt																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732266	74732266	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	82	243	0	ENST00000359995.5:c.643G>C	p.Glu215Gln	p.E215Q	ENST00000359995	NM_001195427.1	215	Gag/Cag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575667	48575667	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	86	443	0	ENST00000342988.3:c.427C>T	p.Leu143Phe	p.L143F	ENST00000342988	NM_005359.5	143	Ctc/Ttc																																																																														
AXL	0	MSKCC	GRCh37	19	41765576	41765576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	160	565	0	ENST00000301178.4:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000301178	NM_021913.4	818	Gaa/Aaa																																																																														
AXL	0	MSKCC	GRCh37	19	41765672	41765672	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	175	502	0	ENST00000301178.4:c.2548G>C	p.Asp850His	p.D850H	ENST00000301178	NM_021913.4	850	Gat/Cat																																																																														
CD79A	0	MSKCC	GRCh37	19	42383359	42383359	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	126	396	0	ENST00000221972.3:c.379C>T	p.Gln127Ter	p.Q127*	ENST00000221972	NM_021601.3	127	Cag/Tag																																																																														
MYCN	0	MSKCC	GRCh37	2	16082231	16082231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	172	683	0	ENST00000281043.3:c.45G>C	p.Lys15Asn	p.K15N	ENST00000281043	NM_005378.4	15	aaG/aaC																																																																														
EPAS1	0	MSKCC	GRCh37	2	46603721	46603721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	194	539	1	ENST00000263734.3:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000263734	NM_001430.4	360	Gaa/Aaa																																																																														
PMS1	0	MSKCC	GRCh37	2	190660645	190660645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	77	306	0	ENST00000441310.2:c.283G>A	p.Glu95Lys	p.E95K	ENST00000441310	NM_000534.4	95	Gaa/Aaa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198270084	198270084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	334	391	0	ENST00000335508.6:c.1352G>A	p.Arg451Gln	p.R451Q	ENST00000335508	NM_012433.2	451	cGa/cAa																																																																														
RAF1	0	MSKCC	GRCh37	3	12626746	12626746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	90	382	0	ENST00000251849.4:c.1543G>C	p.Glu515Gln	p.E515Q	ENST00000251849	NM_002880.3	515	Gag/Cag																																																																														
MLH1	0	MSKCC	GRCh37	3	37089049	37089049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	106	306	0	ENST00000231790.2:c.1771G>A	p.Asp591Asn	p.D591N	ENST00000231790	NM_000249.3	591	Gat/Aat																																																																														
PBRM1	0	MSKCC	GRCh37	3	52651527	52651527	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	66	402	0	ENST00000394830.3:c.1569del	p.Met523IlefsTer46	p.M523Ifs*46	ENST00000394830	NM_018313.4	523	atG/at																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916728	178916728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	177	329	1	ENST00000263967.3:c.115G>A	p.Glu39Lys	p.E39K	ENST00000263967	NM_006218.2	39	Gag/Aag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1941483	1941483	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	94	372	0	ENST00000382891.5:c.1859C>G	p.Ser620Cys	p.S620C	ENST00000382891	NM_133335.3	620	tCt/tGt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66230909	66230909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	59	264	0	ENST00000273854.3:c.2062G>A	p.Glu688Lys	p.E688K	ENST00000273854	NM_004439.5	688	Gaa/Aaa																																																																														
TET2	0	MSKCC	GRCh37	4	106196561	106196561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	76	349	1	ENST00000380013.4:c.4894C>G	p.Gln1632Glu	p.Q1632E	ENST00000380013	NM_001127208.2	1632	Caa/Gaa																																																																														
FAT1	0	MSKCC	GRCh37	4	187549865	187549865	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	89	367	0	ENST00000441802.2:c.4376C>G	p.Ser1459Ter	p.S1459*	ENST00000441802	NM_005245.3	1459	tCa/tGa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38981983	38981983	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	86	358	0	ENST00000357387.3:c.739G>C	p.Asp247His	p.D247H	ENST00000357387	NM_152756.3	247	Gat/Cat																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163317	32163318	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	226	681	0	ENST00000375023.3:c.5908_5909delinsTA	p.Pro1970Tyr	p.P1970Y	ENST00000375023	NM_004557.3	1970	CCt/TAt																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138199621	138199621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	69	371	0	ENST00000237289.4:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000237289	NM_001270507.1	347	Gaa/Aaa																																																																														
ESR1	0	MSKCC	GRCh37	6	152163803	152163803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	126	386	1	ENST00000206249.3:c.524C>T	p.Ala175Val	p.A175V	ENST00000206249	NM_000125.3	175	gCt/gTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845762	151845762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	609	510	0	ENST00000262189.6:c.13250C>T	p.Ala4417Val	p.A4417V	ENST00000262189	NM_170606.2	4417	gCa/gTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	152009018	152009018	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	60	294	0	ENST00000262189.6:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000262189	NM_170606.2	202	Cag/Tag																																																																														
JAK2	0	MSKCC	GRCh37	9	5022105	5022105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	71	399	0	ENST00000381652.3:c.118C>T	p.Gln40Ter	p.Q40*	ENST00000381652	NM_004972.3	40	Cag/Tag																																																																														
ABL1	0	MSKCC	GRCh37	9	133760786	133760786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	164	511	2	ENST00000318560.5:c.3109G>A	p.Glu1037Lys	p.E1037K	ENST00000318560	NM_005157.4	1037	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0030146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	163	618	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	166	870	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																														
DICER1	0	MSKCC	GRCh37	14	95595946	95595946	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	41	528	0	ENST00000343455.3:c.597T>A	p.Cys199Ter	p.C199*	ENST00000343455	NM_177438.2	199	tgT/tgA																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952048	178952048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	91	410	1	ENST00000263967.3:c.3103G>A	p.Ala1035Thr	p.A1035T	ENST00000263967	NM_006218.2	1035	Gct/Act																																																																														
CDH1	0	MSKCC	GRCh37	16	68772219	68772225	+	protein_altering_variant	In_Frame_Del	DEL	AGGAGCC	AGGAGCC	G			P-0030146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	93	676	0	ENST00000261769.5:c.68_74delinsG	p.Gln23_Pro25delinsArg	p.Q23_P25delinsR	ENST00000261769	NM_004360.3	23	cAGGAGCCg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0030225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	10	530	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27777927	27777927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	57	393	1	ENST00000369163.2:c.76G>A	p.Ala26Thr	p.A26T	ENST00000369163	NM_003536.2	26	Gct/Act																																																																														
MDM4	0	MSKCC	GRCh37	1	204511966	204511966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	21	477	0	ENST00000367182.3:c.566G>C	p.Gly189Ala	p.G189A	ENST00000367182	NM_001278516.1	189	gGa/gCa																																																																														
MGA	0	MSKCC	GRCh37	15	42042542	42042542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	50	536	0	ENST00000219905.7:c.6737G>A	p.Arg2246Lys	p.R2246K	ENST00000219905	NM_001164273.1	2246	aGg/aAg																																																																														
CTLA4	0	MSKCC	GRCh37	2	204735353	204735354	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0030225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	32	263	1	ENST00000302823.3:c.154_155delinsTT	p.Gly52Phe	p.G52F	ENST00000302823	NM_005214.4	52	GGc/TTc																																																																														
DAXX	0	MSKCC	GRCh37	6	33288188	33288189	+	missense_variant	Missense_Mutation	DNP	TC	TC	AG			P-0030225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	68	392	1	ENST00000374542.5:c.1219_1220delinsCT	p.Asp407Leu	p.D407L	ENST00000374542	NM_001141970.1	407	GAc/CTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151851148	151851148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	35	410	0	ENST00000262189.6:c.12223C>A	p.Pro4075Thr	p.P4075T	ENST00000262189	NM_170606.2	4075	Ccc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	355	439	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	545	732	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467924	50467924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	92	383	0	ENST00000331340.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000331340	NM_006060.4	387	Gag/Aag																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944947	31944947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	90	340	0	ENST00000340398.3:c.154C>T	p.Arg52Cys	p.R52C	ENST00000340398	NM_001013699.2	52	Cgt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108224604	108224604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	58	238	0	ENST00000278616.4:c.8783G>A	p.Arg2928Lys	p.R2928K	ENST00000278616	NM_000051.3	2928	aGa/aAa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151843748	151843748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	114	386	0	ENST00000262189.6:c.13967C>T	p.Ala4656Val	p.A4656V	ENST00000262189	NM_170606.2	4656	gCg/gTg																																																																														
PARP1	0	MSKCC	GRCh37	1	226578119	226578119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	33	347	0	ENST00000366794.5:c.609G>C	p.Lys203Asn	p.K203N	ENST00000366794	NM_001618.3	203	aaG/aaC																																																																														
GLI1	0	MSKCC	GRCh37	12	57863430	57863430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	331	577	0	ENST00000228682.2:c.1525C>T	p.Leu509Phe	p.L509F	ENST00000228682	NM_005269.2	509	Ctc/Ttc																																																																														
MGA	0	MSKCC	GRCh37	15	41961360	41961360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	58	405	1	ENST00000219905.7:c.268C>T	p.His90Tyr	p.H90Y	ENST00000219905	NM_001164273.1	90	Cat/Tat																																																																														
AURKA	0	MSKCC	GRCh37	20	54945705	54945705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	283	374	1	ENST00000312783.6:c.865C>T	p.Leu289Phe	p.L289F	ENST00000312783	NM_198436.1	289	Ctc/Ttc																																																																														
SHQ1	0	MSKCC	GRCh37	3	72891437	72891437	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	94	418	0	ENST00000325599.8:c.325G>C	p.Glu109Gln	p.E109Q	ENST00000325599	NM_018130.2	109	Gaa/Caa																																																																														
NSD1	0	MSKCC	GRCh37	5	176671236	176671236	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	107	368	0	ENST00000439151.2:c.4343C>G	p.Ser1448Cys	p.S1448C	ENST00000439151	NM_022455.4	1448	tCt/tGt																																																																														
MET	0	MSKCC	GRCh37	7	116411623	116411623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	115	476	0	ENST00000397752.3:c.2802G>C	p.Leu934Phe	p.L934F	ENST00000397752	NM_000245.2	934	ttG/ttC																																																																														
PREX2	0	MSKCC	GRCh37	8	69032438	69032438	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	127	616	0	ENST00000288368.4:c.3512C>A	p.Ser1171Ter	p.S1171*	ENST00000288368	NM_024870.2	1171	tCa/tAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528600	8528600	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	179	307	0	ENST00000356435.5:c.532T>A	p.Leu178Ile	p.L178I	ENST00000356435		178	Tta/Ata																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139410436	139410436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	197	541	1	ENST00000277541.6:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000277541	NM_017617.3	556	Gaa/Aaa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	120	299	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	102	249	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
CTCF	0	MSKCC	GRCh37	16	67650770	67650770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	48	459	1	ENST00000264010.4:c.1075G>A	p.Ala359Thr	p.A359T	ENST00000264010	NM_006565.3	359	Gcc/Acc																																																																														
PTEN	0	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	130	290	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390606	139390606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	104	762	0	ENST00000277541.6:c.7585G>A	p.Val2529Ile	p.V2529I	ENST00000277541	NM_017617.3	2529	Gtc/Atc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602341	10602341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	198	643	2	ENST00000171111.5:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000171111	NM_203500.1	413	Cgt/Tgt																																																																														
CUL3	0	MSKCC	GRCh37	2	225368387	225368388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	94	337	2	ENST00000264414.4:c.1358dupA	p.Asn453LysfsTer5	p.N453Kfs*5	ENST00000264414	NM_003590.4	453	aac/aaAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717714	89717714	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	170	419	1	ENST00000371953.3:c.740del	p.Leu247TyrfsTer9	p.L247Yfs*9	ENST00000371953	NM_000314.4	247	Tta/ta																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	148	496	0	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023581	27023582	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	127	471	0	ENST00000324856.7:c.690_691del	p.Leu231GlufsTer168	p.L231Efs*168	ENST00000324856	NM_006015.4	229	taCGcg/tacg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107224	27107225	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	76	315	0	ENST00000324856.7:c.6836dup	p.Phe2280ValfsTer105	p.F2280Vfs*105	ENST00000324856	NM_006015.4	2279	ctg/cTtg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99500401	99500403	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	155	632	0	ENST00000268035.6:c.3836_3838del	p.Phe1279del	p.F1279del	ENST00000268035	NM_000875.3	1278	tcCTTc/tcc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831337	72831338	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCTGGGCCAGCGTTTGTGCTTGTTGTTGTTGTTGTTGTTGTT			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	24	223	0	ENST00000268489.5:c.5201_5243dup	p.Gln1749ThrfsTer39	p.Q1749Tfs*39	ENST00000268489	NM_006885.3	1748	gcc/gcAACAACAACAACAACAACAACAAGCACAAACGCTGGCCCAGGCc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164748	36164749	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGTG			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	212	576	0	ENST00000300305.3:c.1122_1126dup	p.Arg376ProfsTer220	p.R376Pfs*220	ENST00000300305		376	cgc/cCACGCgc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589596	67589608	+	protein_altering_variant	In_Frame_Del	DEL	CACTCAGTTTCAA	CACTCAGTTTCAA	AACT			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	121	334	3	ENST00000274335.5:c.1359_1371delinsAACT	p.Asn453_Gln457delinsLysThr	p.N453_Q457delinsKT	ENST00000274335		453	aaCACTCAGTTTCAA/aaAACT																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591050	67591051	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTGAAGAAGC			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	64	269	0	ENST00000274335.5:c.1644_1654dup	p.Gln552ProfsTer2	p.Q552Pfs*2	ENST00000274335		548	gac/gaCTTGAAGAAGCc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413893	139413893	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	142	410	0	ENST00000277541.6:c.865+2C>T		p.X289_splice	ENST00000277541	NM_017617.3	289																																																																															
FOXA1	0	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	290	656	1	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0030229-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	560	631	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	146	559	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	94	359	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0030230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	41	196	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	151	543	2	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
PREX2	0	MSKCC	GRCh37	8	68965472	68965472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200682883		P-0030230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	358	757	0	ENST00000288368.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000288368	NM_024870.2	362	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	168	432	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	180	387	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	89	243	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	429	696	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	157	305	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	36	240	0	ENST00000342988.3:c.1256G>T	p.Gly419Val	p.G419V	ENST00000342988	NM_005359.5	419	gGg/gTg																																																																														
ATRX	0	MSKCC	GRCh37	X	76855029	76855029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	8	177	1	ENST00000373344.5:c.5807A>G	p.Lys1936Arg	p.K1936R	ENST00000373344	NM_000489.3	1936	aAg/aGg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	37	298	0	ENST00000342988.3:c.1157G>C	p.Gly386Ala	p.G386A	ENST00000342988	NM_005359.5	386	gGt/gCt																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850813	63850813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	43	401	0	ENST00000279873.7:c.1591G>A	p.Glu531Lys	p.E531K	ENST00000279873	NM_032199.2	531	Gag/Aag																																																																														
NF1	0	MSKCC	GRCh37	17	29686031	29686043	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGGTAAGAAAAT	AAGGTAAGAAAAT	-			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	26	232	0	ENST00000358273.4:c.8159_8160+11del		p.X2720_splice	ENST00000358273	NM_001042492.2	2720																																																																															
RECQL4	0	MSKCC	GRCh37	8	145742552	145742552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	153	515	0	ENST00000428558.2:c.236G>A	p.Gly79Glu	p.G79E	ENST00000428558	NM_004260.3	79	gGg/gAg																																																																														
IDH2	0	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	139	502	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg																																																																														
BAP1	0	MSKCC	GRCh37	3	52443870	52443870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	312	707	0	ENST00000460680.1:c.25G>A	p.Glu9Lys	p.E9K	ENST00000460680	NM_004656.3	9	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	175	250	1	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59763251	59763251	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	176	607	0	ENST00000259008.2:c.2851del	p.Ile951LeufsTer34	p.I951Lfs*34	ENST00000259008	NM_032043.2	951	Att/tt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790026	40790026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	65	461	0	ENST00000373198.4:c.2705G>A	p.Arg902Lys	p.R902K	ENST00000373198	NM_133170.3	902	aGa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	142	444	0				ENST00000310581	NM_198253.2																																																																																
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	140	614	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																														
SETD2	0	MSKCC	GRCh37	3	47163710	47163711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	40	512	0	ENST00000409792.3:c.2415dup	p.Asn806Ter	p.N806*	ENST00000409792	NM_014159.6	805	-/T																																																																														
KMT2C	0	MSKCC	GRCh37	7	151835896	151835897	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0030288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	133	435	0	ENST00000262189.6:c.14627_14628delinsAA	p.Ile4876Lys	p.I4876K	ENST00000262189	NM_170606.2	4876	aTC/aAA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	254	460	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023090	27023090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	37	70	0	ENST00000324856.7:c.197del	p.Pro66ArgfsTer35	p.P66Rfs*35	ENST00000324856	NM_006015.4	66	Ccg/cg																																																																														
MPL	0	MSKCC	GRCh37	1	43818427	43818427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	165	552	0	ENST00000372470.3:c.1892A>G	p.Tyr631Cys	p.Y631C	ENST00000372470	NM_005373.2	631	tAt/tGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32953893	32953896	+	frameshift_variant	Frame_Shift_Del	DEL	TGAG	TGAG	-			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	91	369	0	ENST00000380152.3:c.8961_8964del	p.Ser2988PhefsTer12	p.S2988Ffs*12	ENST00000380152		2987	cTGAGt/ct																																																																														
TSC2	0	MSKCC	GRCh37	16	2130282	2130285	+	frameshift_variant	Frame_Shift_Del	DEL	GGCA	GGCA	TT			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	166	548	1	ENST00000219476.3:c.3514_3517delinsTT	p.Gly1172PhefsTer61	p.G1172Ffs*61	ENST00000219476	NM_000548.3	1172	GGCAcc/TTcc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41256250	41256278	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTTTTTTGCAAAATTATAGCTGTTTGCAT	CTTTTTTGCAAAATTATAGCTGTTTGCAT	-			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	82	310	0	ENST00000357654.3:c.302_330del	p.Tyr101Ter	p.Y101*	ENST00000357654	NM_007294.3	101	tATGCAAACAGCTATAATTTTGCAAAAAAG/t																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591885	48591885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	134	448	0	ENST00000342988.3:c.1048G>T	p.Val350Phe	p.V350F	ENST00000342988	NM_005359.5	350	Gtt/Ttt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589594	67589618	+	protein_altering_variant	In_Frame_Del	DEL	AACACTCAGTTTCAAGAAAAAAGTC	AACACTCAGTTTCAAGAAAAAAGTC	GATA			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	75	410	1	ENST00000274335.5:c.1357_1381delinsGATA	p.Asn453_Ser460delinsAsp	p.N453_S460delinsD	ENST00000274335		453	AACACTCAGTTTCAAGAAAAAAGTCga/GATAga																																																																														
ESR1	0	MSKCC	GRCh37	6	152332825	152332825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	255	417	0	ENST00000206249.3:c.1132del	p.Leu378PhefsTer2	p.L378Ffs*2	ENST00000206249	NM_000125.3	377	caC/ca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151853342	151853342	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	139	396	0	ENST00000262189.6:c.11760del	p.Phe3920LeufsTer14	p.F3920Lfs*14	ENST00000262189	NM_170606.2	3920	ttT/tt																																																																														
XIAP	0	MSKCC	GRCh37	X	123034448	123034448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	132	467	0	ENST00000355640.3:c.1205G>A	p.Ser402Asn	p.S402N	ENST00000355640		402	aGc/aAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	147	320	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0030292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	301	662	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463541	25463541	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	295	650	0	ENST00000264709.3:c.2141C>G	p.Ser714Cys	p.S714C	ENST00000264709	NM_175629.2	714	tCc/tGc																																																																														
EZH1	0	MSKCC	GRCh37	17	40858107	40858107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	317	699	0	ENST00000428826.2:c.1757G>T	p.Cys586Phe	p.C586F	ENST00000428826		586	tGt/tTt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	23	453	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0030300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	23	381	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	59	597	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																																																														
MYCN	0	MSKCC	GRCh37	2	16086157	16086157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	50	592	1	ENST00000281043.3:c.1333G>A	p.Glu445Lys	p.E445K	ENST00000281043	NM_005378.4	445	Gaa/Aaa																																																																														
SETD8	0	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0030300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	12	35	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094280	27094280	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	70	398	0	ENST00000324856.7:c.2989-1G>A		p.X997_splice	ENST00000324856	NM_006015.4	997																																																																															
ARID1A	0	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	220	622	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
CSDE1	0	MSKCC	GRCh37	1	115266570	115266570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	111	587	0	ENST00000438362.2:c.1945C>T	p.Arg649Cys	p.R649C	ENST00000438362	NM_001242891.1	649	Cgc/Tgc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156830895	156830895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	176	490	1	ENST00000524377.1:c.169G>A	p.Asp57Asn	p.D57N	ENST00000524377	NM_002529.3	57	Gat/Aat																																																																														
CDC73	0	MSKCC	GRCh37	1	193104704	193104704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	32	286	0	ENST00000367435.3:c.408G>T	p.Lys136Asn	p.K136N	ENST00000367435	NM_024529.4	136	aaG/aaT																																																																														
FH	0	MSKCC	GRCh37	1	241661229	241661229	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	162	534	0	ENST00000366560.3:c.1432A>C	p.Asn478His	p.N478H	ENST00000366560	NM_000143.3	478	Aat/Cat																																																																														
AKT3	0	MSKCC	GRCh37	1	243716100	243716100	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	108	465	0	ENST00000263826.5:c.1094T>G	p.Phe365Cys	p.F365C	ENST00000263826	NM_005465.4	365	tTt/tGt																																																																														
RET	0	MSKCC	GRCh37	10	43597975	43597975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	236	710	0	ENST00000355710.3:c.523C>T	p.Arg175Cys	p.R175C	ENST00000355710	NM_020975.4	175	Cgc/Tgc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63845621	63845621	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	75	359	0	ENST00000279873.7:c.1360G>T	p.Glu454Ter	p.E454*	ENST00000279873	NM_032199.2	454	Gaa/Taa																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724171	112724171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	59	555	0	ENST00000369452.4:c.55C>T	p.Pro19Ser	p.P19S	ENST00000369452	NM_007373.3	19	Cca/Tca																																																																														
LMO1	0	MSKCC	GRCh37	11	8248592	8248592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	64	657	0	ENST00000335790.3:c.295G>A	p.Glu99Lys	p.E99K	ENST00000335790	NM_002315.2	99	Gag/Aag																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204742	94204742	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	48	288	0	ENST00000323929.3:c.843G>T	p.Lys281Asn	p.K281N	ENST00000323929	NM_005591.3	281	aaG/aaT																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204836	94204836	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	35	345	0	ENST00000323929.3:c.749A>C	p.Lys250Thr	p.K250T	ENST00000323929	NM_005591.3	250	aAa/aCa																																																																														
SESN3	0	MSKCC	GRCh37	11	94911892	94911892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	78	574	0	ENST00000536441.1:c.1038G>T	p.Leu346Phe	p.L346F	ENST00000536441	NM_144665.3	346	ttG/ttT																																																																														
ATM	0	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	69	448	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																																																														
ATM	0	MSKCC	GRCh37	11	108203507	108203507	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	23	239	0	ENST00000278616.4:c.7807A>C	p.Asn2603His	p.N2603H	ENST00000278616	NM_000051.3	2603	Aat/Cat																																																																														
ATM	0	MSKCC	GRCh37	11	108214018	108214018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	89	401	0	ENST00000278616.4:c.8338C>A	p.Leu2780Ile	p.L2780I	ENST00000278616	NM_000051.3	2780	Ctt/Att																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373443	118373443	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	105	471	0	ENST00000534358.1:c.6836A>C	p.Lys2279Thr	p.K2279T	ENST00000534358	NM_005933.3	2279	aAa/aCa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376958	118376958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139366882		P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	40	413	0	ENST00000534358.1:c.10351G>A	p.Glu3451Lys	p.E3451K	ENST00000534358	NM_005933.3	3451	Gaa/Aaa																																																																														
RAD52	0	MSKCC	GRCh37	12	1025838	1025838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	147	497	0	ENST00000358495.3:c.692C>T	p.Ala231Val	p.A231V	ENST00000358495	NM_134424.2	231	gCt/gTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49415866	49415866	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	128	474	0	ENST00000301067.7:c.16481T>G	p.Ile5494Ser	p.I5494S	ENST00000301067	NM_003482.3	5494	aTc/aGc																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50490675	50490675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	200	606	0	ENST00000394963.4:c.1312C>T	p.Arg438Trp	p.R438W	ENST00000394963	NM_003076.4	438	Cgg/Tgg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	249	647	1	ENST00000267101.3:c.273G>T	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atT																																																																														
POLE	0	MSKCC	GRCh37	12	133215787	133215787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	158	570	1	ENST00000320574.5:c.5476C>T	p.Arg1826Trp	p.R1826W	ENST00000320574	NM_006231.2	1826	Cgg/Tgg																																																																														
POLE	0	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	205	571	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
LATS2	0	MSKCC	GRCh37	13	21549115	21549115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	123	549	0	ENST00000382592.4:c.3161G>A	p.Arg1054Gln	p.R1054Q	ENST00000382592	NM_014572.2	1054	cGa/cAa																																																																														
LATS2	0	MSKCC	GRCh37	13	21620154	21620154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	156	459	0	ENST00000382592.4:c.12G>T	p.Lys4Asn	p.K4N	ENST00000382592	NM_014572.2	4	aaG/aaT																																																																														
FLT3	0	MSKCC	GRCh37	13	28589369	28589369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	114	479	0	ENST00000241453.7:c.2678C>T	p.Pro893Leu	p.P893L	ENST00000241453	NM_004119.2	893	cCg/cTg																																																																														
FLT1	0	MSKCC	GRCh37	13	28883012	28883012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	150	597	1	ENST00000282397.4:c.3688G>T	p.Glu1230Ter	p.E1230*	ENST00000282397	NM_002019.4	1230	Gaa/Taa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914877	32914877	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	56	308	0	ENST00000380152.3:c.6385G>T	p.Glu2129Ter	p.E2129*	ENST00000380152		2129	Gaa/Taa																																																																														
DIS3	0	MSKCC	GRCh37	13	73355072	73355072	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	55	487	0	ENST00000377767.4:c.298A>C	p.Asn100His	p.N100H	ENST00000377767	NM_014953.3	100	Aat/Cat																																																																														
ERCC5	0	MSKCC	GRCh37	13	103519195	103519195	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	73	296	0	ENST00000355739.4:c.2533G>A	p.Gly845Arg	p.G845R	ENST00000355739	NM_000123.3	845	Gga/Aga																																																																														
PRKD1	0	MSKCC	GRCh37	14	30100143	30100143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs191202207		P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	101	586	0	ENST00000331968.5:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000331968	NM_002742.2	493	Gaa/Aaa																																																																														
TSHR	0	MSKCC	GRCh37	14	81554305	81554305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	125	473	0	ENST00000298171.2:c.325C>T	p.Arg109Trp	p.R109W	ENST00000298171	NM_000369.2	109	Cgg/Tgg																																																																														
MGA	0	MSKCC	GRCh37	15	42003132	42003132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	74	725	0	ENST00000219905.7:c.2669C>A	p.Ser890Tyr	p.S890Y	ENST00000219905	NM_001164273.1	890	tCt/tAt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43707863	43707863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	256	717	0	ENST00000382044.4:c.5018G>T	p.Arg1673Ile	p.R1673I	ENST00000382044	NM_001141980.1	1673	aGa/aTa																																																																														
B2M	0	MSKCC	GRCh37	15	45007672	45007672	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	74	387	0	ENST00000558401.1:c.119C>A	p.Ser40Ter	p.S40*	ENST00000558401	NM_004048.2	40	tCa/tAa																																																																														
SLX4	0	MSKCC	GRCh37	16	3639099	3639099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	215	632	2	ENST00000294008.3:c.4540T>C	p.Trp1514Arg	p.W1514R	ENST00000294008	NM_032444.2	1514	Tgg/Cgg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934560	9934560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	49	522	0	ENST00000330684.3:c.1595G>A	p.Gly532Glu	p.G532E	ENST00000330684	NM_001134407.1	532	gGa/gAa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032002	10032002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	181	654	2	ENST00000330684.3:c.821C>T	p.Ser274Leu	p.S274L	ENST00000330684	NM_001134407.1	274	tCg/tTg																																																																														
PALB2	0	MSKCC	GRCh37	16	23646516	23646516	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	159	481	0	ENST00000261584.4:c.1351T>G	p.Leu451Val	p.L451V	ENST00000261584	NM_024675.3	451	Tta/Gta																																																																														
CYLD	0	MSKCC	GRCh37	16	50811760	50811760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	36	168	0	ENST00000398568.2:c.1037G>T	p.Arg346Ile	p.R346I	ENST00000398568	NM_001042412.1	346	aGa/aTa																																																																														
NUP93	0	MSKCC	GRCh37	16	56862974	56862974	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	181	500	0	ENST00000308159.5:c.880C>T	p.Arg294Ter	p.R294*	ENST00000308159	NM_014669.4	294	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67662453	67662453	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	197	558	0	ENST00000264010.4:c.1699C>T	p.Arg567Trp	p.R567W	ENST00000264010	NM_006565.3	567	Cgg/Tgg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348773	89348773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1315	241	876	4	ENST00000301030.4:c.4177G>A	p.Glu1393Lys	p.E1393K	ENST00000301030	NM_001256183.1	1393	Gaa/Aaa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351227	89351227	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	211	642	0	ENST00000301030.4:c.1723A>C	p.Ser575Arg	p.S575R	ENST00000301030	NM_001256183.1	575	Agc/Cgc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11958224	11958224	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	19	257	0	ENST00000353533.5:c.134A>C	p.Lys45Thr	p.K45T	ENST00000353533	NM_003010.3	45	aAg/aCg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15978955	15978955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	169	525	0	ENST00000268712.3:c.3563C>T	p.Ser1188Leu	p.S1188L	ENST00000268712	NM_006311.3	1188	tCg/tTg																																																																														
NF1	0	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	165	475	0	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	72	386	1	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
STAT3	0	MSKCC	GRCh37	17	40486056	40486056	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	106	453	0	ENST00000264657.5:c.809T>C	p.Leu270Ser	p.L270S	ENST00000264657	NM_139276.2	270	tTa/tCa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41256949	41256949	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	93	419	0	ENST00000357654.3:c.237T>G	p.Phe79Leu	p.F79L	ENST00000357654	NM_007294.3	79	ttT/ttG																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740836	58740836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	227	619	1	ENST00000305921.3:c.1741C>T	p.Arg581Ter	p.R581*	ENST00000305921	NM_003620.3	581	Cga/Tga																																																																														
SOX9	0	MSKCC	GRCh37	17	70119900	70119900	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	178	544	0	ENST00000245479.2:c.902A>G	p.Asn301Ser	p.N301S	ENST00000245479	NM_000346.3	301	aAc/aGc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39600660	39600660	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	34	186	0	ENST00000262039.4:c.1475A>C	p.Tyr492Ser	p.Y492S	ENST00000262039	NM_002647.2	492	tAt/tCt																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395775	45395775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	94	405	0	ENST00000262160.6:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000262160	NM_005901.5	120	cGa/cAa																																																																														
SMAD2	0	MSKCC	GRCh37	18	45396873	45396873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	34	404	0	ENST00000262160.6:c.299G>A	p.Gly100Asp	p.G100D	ENST00000262160	NM_005901.5	100	gGc/gAc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2180724	2180724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	59	622	0	ENST00000398665.3:c.94G>A	p.Asp32Asn	p.D32N	ENST00000398665	NM_032482.2	32	Gat/Aat																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792756	33792756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	50	57	0	ENST00000498907.2:c.565C>T	p.Pro189Ser	p.P189S	ENST00000498907	NM_004364.3	189	Ccc/Tcc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52693380	52693380	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	149	658	0	ENST00000322088.6:c.31T>C	p.Tyr11His	p.Y11H	ENST00000322088	NM_014225.5	11	Tac/Cac																																																																														
INPP4A	0	MSKCC	GRCh37	2	99137182	99137182	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	47	205	0	ENST00000074304.5:c.139G>T	p.Glu47Ter	p.E47*	ENST00000074304	NM_001134224.1	47	Gaa/Taa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095644	178095644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	91	435	1	ENST00000397062.3:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000397062	NM_006164.4	563	Gaa/Aaa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266128	198266128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	67	319	0	ENST00000335508.6:c.2492G>A	p.Arg831Gln	p.R831Q	ENST00000335508	NM_012433.2	831	cGa/cAa																																																																														
CASP8	0	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	161	615	0	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	67	329	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248362	212248362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	85	351	0	ENST00000342788.4:c.3905G>T	p.Arg1302Ile	p.R1302I	ENST00000342788	NM_005235.2	1302	aGa/aTa																																																																														
CUL3	0	MSKCC	GRCh37	2	225367746	225367746	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	38	456	0	ENST00000264414.4:c.1421T>G	p.Phe474Cys	p.F474C	ENST00000264414	NM_003590.4	474	tTt/tGt																																																																														
CUL3	0	MSKCC	GRCh37	2	225422513	225422513	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	56	281	1	ENST00000264414.4:c.127G>T	p.Glu43Ter	p.E43*	ENST00000264414	NM_003590.4	43	Gaa/Taa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546725	9546725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	99	401	0	ENST00000353224.5:c.1297C>T	p.Arg433Trp	p.R433W	ENST00000353224	NM_177990.2	433	Cgg/Tgg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021439	31021439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	203	510	1	ENST00000375687.4:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000375687	NM_015338.5	480	Gaa/Aaa																																																																														
TOP1	0	MSKCC	GRCh37	20	39725963	39725963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	69	337	2	ENST00000361337.2:c.834C>A	p.Phe278Leu	p.F278L	ENST00000361337	NM_003286.2	278	ttC/ttA																																																																														
PTPRT	0	MSKCC	GRCh37	20	40709519	40709519	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	151	482	0	ENST00000373198.4:c.4383G>T	p.Ter1461TyrextTer31	p.*1461Yext*31	ENST00000373198	NM_133170.3	1461	taG/taT																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	46	469	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																														
MST1R	0	MSKCC	GRCh37	3	49933725	49933725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	87	770	0	ENST00000296474.3:c.2552G>A	p.Gly851Asp	p.G851D	ENST00000296474	NM_002447.2	851	gGc/gAc																																																																														
BAP1	0	MSKCC	GRCh37	3	52439131	52439131	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	148	551	0	ENST00000460680.1:c.1111A>G	p.Met371Val	p.M371V	ENST00000460680	NM_004656.3	371	Atg/Gtg																																																																														
BAP1	0	MSKCC	GRCh37	3	52442611	52442611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	93	373	0	ENST00000460680.1:c.134G>A	p.Gly45Glu	p.G45E	ENST00000460680	NM_004656.3	45	gGa/gAa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026106	71026106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	172	474	0	ENST00000318789.4:c.1516G>A	p.Ala506Thr	p.A506T	ENST00000318789	NM_032682.5	506	Gcg/Acg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259536	89259536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	143	453	0	ENST00000336596.2:c.680G>T	p.Arg227Ile	p.R227I	ENST00000336596	NM_005233.5	227	aGa/aTa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468407	89468407	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs201062946		P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	101	371	0	ENST00000336596.2:c.1941G>T	p.Glu647Asp	p.E647D	ENST00000336596	NM_005233.5	647	gaG/gaT																																																																														
EPHA3	0	MSKCC	GRCh37	3	89498428	89498428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	70	432	0	ENST00000336596.2:c.2400G>T	p.Lys800Asn	p.K800N	ENST00000336596	NM_005233.5	800	aaG/aaT																																																																														
ATR	0	MSKCC	GRCh37	3	142172046	142172046	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	106	416	0	ENST00000350721.4:c.7685T>G	p.Leu2562Arg	p.L2562R	ENST00000350721	NM_001184.3	2562	cTt/cGt																																																																														
ATR	0	MSKCC	GRCh37	3	142178129	142178129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	85	359	0	ENST00000350721.4:c.7289C>T	p.Pro2430Leu	p.P2430L	ENST00000350721	NM_001184.3	2430	cCc/cTc																																																																														
ATR	0	MSKCC	GRCh37	3	142281637	142281637	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	24	460	0	ENST00000350721.4:c.607G>T	p.Glu203Ter	p.E203*	ENST00000350721	NM_001184.3	203	Gaa/Taa																																																																														
WWTR1	0	MSKCC	GRCh37	3	149243898	149243898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	188	525	0	ENST00000360632.3:c.920C>T	p.Ser307Leu	p.S307L	ENST00000360632	NM_015472.4	307	tCg/tTg																																																																														
PRKCI	0	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	72	319	1	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185198064	185198064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	54	452	1	ENST00000265026.3:c.2546G>T	p.Ser849Ile	p.S849I	ENST00000265026	NM_004721.4	849	aGc/aTc																																																																														
TP63	0	MSKCC	GRCh37	3	189584496	189584496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	124	430	0	ENST00000264731.3:c.792G>T	p.Leu264Phe	p.L264F	ENST00000264731	NM_003722.4	264	ttG/ttT																																																																														
KIT	0	MSKCC	GRCh37	4	55561767	55561767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	44	402	1	ENST00000288135.5:c.157G>A	p.Glu53Lys	p.E53K	ENST00000288135	NM_000222.2	53	Gag/Aag																																																																														
KIT	0	MSKCC	GRCh37	4	55561851	55561851	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	84	505	0	ENST00000288135.5:c.241G>T	p.Glu81Ter	p.E81*	ENST00000288135	NM_000222.2	81	Gaa/Taa																																																																														
KDR	0	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	107	623	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197721	66197721	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	71	531	1	ENST00000273854.3:c.2978C>A	p.Ser993Ter	p.S993*	ENST00000273854	NM_004439.5	993	tCa/tAa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197845	66197845	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	24	285	0	ENST00000273854.3:c.2854G>A	p.Val952Ile	p.V952I	ENST00000273854	NM_004439.5	952	Gta/Ata																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280068	66280068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	62	418	1	ENST00000273854.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000273854	NM_004439.5	541	Cga/Tga																																																																														
FAM175A	0	MSKCC	GRCh37	4	84391547	84391547	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	53	374	0	ENST00000321945.7:c.285T>G	p.Asn95Lys	p.N95K	ENST00000321945	NM_139076.2	95	aaT/aaG																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244181	153244181	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	55	498	0	ENST00000281708.4:c.1976A>G	p.Asn659Ser	p.N659S	ENST00000281708	NM_033632.3	659	aAc/aGc																																																																														
FAT1	0	MSKCC	GRCh37	4	187628406	187628406	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	168	703	0	ENST00000441802.2:c.2576A>G	p.Tyr859Cys	p.Y859C	ENST00000441802	NM_005245.3	859	tAc/tGc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67569301	67569301	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	139	386	0	ENST00000274335.5:c.418G>T	p.Glu140Ter	p.E140*	ENST00000274335		140	Gaa/Taa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589627	67589627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	21	161	0	ENST00000274335.5:c.1390G>A	p.Asp464Asn	p.D464N	ENST00000274335		464	Gat/Aat																																																																														
MSH3	0	MSKCC	GRCh37	5	79950549	79950549	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	102	289	0	ENST00000265081.6:c.3G>A	p.Met1?	p.M1?	ENST00000265081	NM_002439.4	1	atG/atA																																																																														
RASA1	0	MSKCC	GRCh37	5	86629097	86629097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	35	221	0	ENST00000274376.6:c.842G>T	p.Arg281Ile	p.R281I	ENST00000274376	NM_002890.2	281	aGa/aTa																																																																														
APC	0	MSKCC	GRCh37	5	112176863	112176863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	57	367	0	ENST00000257430.4:c.5572C>T	p.Arg1858Ter	p.R1858*	ENST00000257430	NM_000038.5	1858	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112176906	112176906	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	34	373	1	ENST00000257430.4:c.5615T>C	p.Val1872Ala	p.V1872A	ENST00000257430	NM_000038.5	1872	gTt/gCt																																																																														
APC	0	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	65	408	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112178001	112178001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	130	526	0	ENST00000257430.4:c.6710G>A	p.Arg2237Gln	p.R2237Q	ENST00000257430	NM_000038.5	2237	cGa/cAa																																																																														
NSD1	0	MSKCC	GRCh37	5	176637676	176637676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	61	694	0	ENST00000439151.2:c.2276C>A	p.Ser759Ter	p.S759*	ENST00000439151	NM_022455.4	759	tCa/tAa																																																																														
NSD1	0	MSKCC	GRCh37	5	176637739	176637739	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201327209		P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	205	712	0	ENST00000439151.2:c.2339C>T	p.Ser780Leu	p.S780L	ENST00000439151	NM_022455.4	780	tCg/tTg																																																																														
IRF4	0	MSKCC	GRCh37	6	397138	397138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	139	470	0	ENST00000380956.4:c.523G>A	p.Asp175Asn	p.D175N	ENST00000380956	NM_001195286.1	175	Gac/Aac																																																																														
IRF4	0	MSKCC	GRCh37	6	397209	397209	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	148	516	0	ENST00000380956.4:c.594T>G	p.Phe198Leu	p.F198L	ENST00000380956	NM_001195286.1	198	ttT/ttG																																																																														
DAXX	0	MSKCC	GRCh37	6	33288236	33288236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	92	513	2	ENST00000374542.5:c.1172G>T	p.Arg391Ile	p.R391I	ENST00000374542	NM_001141970.1	391	aGa/aTa																																																																														
FYN	0	MSKCC	GRCh37	6	112015596	112015596	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	57	491	0	ENST00000368678.4:c.1246G>T	p.Glu416Ter	p.E416*	ENST00000368678		416	Gag/Tag																																																																														
ROS1	0	MSKCC	GRCh37	6	117642462	117642462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	200	564	0	ENST00000368508.3:c.5737G>A	p.Ala1913Thr	p.A1913T	ENST00000368508	NM_002944.2	1913	Gca/Aca																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138198260	138198260	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	61	335	0	ENST00000237289.4:c.853G>T	p.Asp285Tyr	p.D285Y	ENST00000237289	NM_001270507.1	285	Gac/Tac																																																																														
LATS1	0	MSKCC	GRCh37	6	149983001	149983001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	49	440	0	ENST00000253339.5:c.3257A>G	p.Asp1086Gly	p.D1086G	ENST00000253339		1086	gAc/gGc																																																																														
LATS1	0	MSKCC	GRCh37	6	150001373	150001373	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200119992		P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	106	578	0	ENST00000253339.5:c.2231G>A	p.Arg744Gln	p.R744Q	ENST00000253339		744	cGa/cAa																																																																														
HGF	0	MSKCC	GRCh37	7	81381529	81381529	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	99	350	0	ENST00000222390.5:c.532C>T	p.Arg178Ter	p.R178*	ENST00000222390	NM_000601.4	178	Cga/Tga																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106526611	106526611	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	42	462	0	ENST00000359195.3:c.2904T>G	p.Ile968Met	p.I968M	ENST00000359195	NM_002649.2	968	atT/atG																																																																														
MET	0	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	87	291	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																																																														
PREX2	0	MSKCC	GRCh37	8	68992692	68992692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	85	387	0	ENST00000288368.4:c.1657G>A	p.Glu553Lys	p.E553K	ENST00000288368	NM_024870.2	553	Gaa/Aaa																																																																														
PREX2	0	MSKCC	GRCh37	8	69032446	69032446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	47	511	0	ENST00000288368.4:c.3520A>G	p.Asn1174Asp	p.N1174D	ENST00000288368	NM_024870.2	1174	Aat/Gat																																																																														
RECQL4	0	MSKCC	GRCh37	8	145742042	145742042	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	253	663	0	ENST00000428558.2:c.461A>C	p.Lys154Thr	p.K154T	ENST00000428558	NM_004260.3	154	aAa/aCa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499811	8499811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	176	540	1	ENST00000356435.5:c.2158G>T	p.Val720Leu	p.V720L	ENST00000356435		720	Gta/Tta																																																																														
GNAQ	0	MSKCC	GRCh37	9	80412470	80412470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28764015		P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	138	412	0	ENST00000286548.4:c.571G>A	p.Glu191Lys	p.E191K	ENST00000286548	NM_002072.3	191	Gaa/Aaa																																																																														
ABL1	0	MSKCC	GRCh37	9	133750334	133750334	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	213	607	0	ENST00000318560.5:c.1165A>G	p.Thr389Ala	p.T389A	ENST00000318560	NM_005157.4	389	Aca/Gca																																																																														
BCOR	0	MSKCC	GRCh37	X	39916462	39916462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	115	686	1	ENST00000378444.4:c.4541G>A	p.Arg1514Gln	p.R1514Q	ENST00000378444	NM_001123385.1	1514	cGa/cAa																																																																														
BCOR	0	MSKCC	GRCh37	X	39922873	39922873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	109	515	0	ENST00000378444.4:c.3835G>T	p.Asp1279Tyr	p.D1279Y	ENST00000378444	NM_001123385.1	1279	Gac/Tac																																																																														
KDM5C	0	MSKCC	GRCh37	X	53225871	53225871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	126	553	0	ENST00000375401.3:c.2978C>T	p.Ala993Val	p.A993V	ENST00000375401	NM_004187.3	993	gCc/gTc																																																																														
MED12	0	MSKCC	GRCh37	X	70344018	70344018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	222	603	0	ENST00000374080.3:c.1754G>A	p.Arg585Gln	p.R585Q	ENST00000374080		585	cGa/cAa																																																																														
STAG2	0	MSKCC	GRCh37	X	123176490	123176490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	75	257	1	ENST00000218089.9:c.457G>A	p.Asp153Asn	p.D153N	ENST00000218089	NM_001042749.1	153	Gat/Aat																																																																														
STAG2	0	MSKCC	GRCh37	X	123189991	123189991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	82	414	0	ENST00000218089.9:c.1210G>T	p.Val404Phe	p.V404F	ENST00000218089	NM_001042749.1	404	Gtt/Ttt																																																																														
STAG2	0	MSKCC	GRCh37	X	123200039	123200039	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	14	205	0	ENST00000218089.9:c.2111C>A	p.Ser704Ter	p.S704*	ENST00000218089	NM_001042749.1	704	tCa/tAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	31	584	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0030327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	34	594	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	146	596	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0030331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	108	594	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	64	372	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925328	114925328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	113	526	0	ENST00000543371.1:c.1406G>A	p.Cys469Tyr	p.C469Y	ENST00000543371	NM_001198531.1	469	tGc/tAc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850820	63850820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	56	795	0	ENST00000279873.7:c.1598C>T	p.Ala533Val	p.A533V	ENST00000279873	NM_032199.2	533	gCg/gTg																																																																														
TET1	0	MSKCC	GRCh37	10	70332760	70332760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	38	605	1	ENST00000373644.4:c.665G>A	p.Arg222His	p.R222H	ENST00000373644	NM_030625.2	222	cGc/cAc																																																																														
DICER1	0	MSKCC	GRCh37	14	95572112	95572112	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	74	366	0	ENST00000343455.3:c.2996T>C	p.Leu999Pro	p.L999P	ENST00000343455	NM_177438.2	999	cTt/cCt																																																																														
CHEK2	0	MSKCC	GRCh37	22	29095854	29095854	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	54	574	0	ENST00000328354.6:c.980A>G	p.Tyr327Cys	p.Y327C	ENST00000328354	NM_007194.3	327	tAt/tGt																																																																														
EP300	0	MSKCC	GRCh37	22	41572465	41572465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	55	752	1	ENST00000263253.7:c.4994G>A	p.Arg1665His	p.R1665H	ENST00000263253	NM_001429.3	1665	cGc/cAc																																																																														
MGA	0	MSKCC	GRCh37	15	42041017	42041020	+	frameshift_variant	Frame_Shift_Del	DEL	AACT	AACT	-			P-0030333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	375	608	0	ENST00000219905.7:c.5395_5398del	p.Asn1799TyrfsTer38	p.N1799Yfs*38	ENST00000219905	NM_001164273.1	1799	AACTta/ta																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0030357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	142	401	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0030357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	840	538	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	27	295	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
STK11	0	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	326	376	0	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg																																																																														
HGF	0	MSKCC	GRCh37	7	81359091	81359091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	31	212	0	ENST00000222390.5:c.870C>A	p.Asp290Glu	p.D290E	ENST00000222390	NM_000601.4	290	gaC/gaA																																																																														
NEGR1	0	MSKCC	GRCh37	1	72400780	72400781	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0030358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	31	158	0	ENST00000357731.5:c.390_391delinsTT	p.Gln130_Val131delinsHisLeu	p.Q130_V131delinsHL	ENST00000357731	NM_173808.2	130	caGGtg/caTTtg																																																																														
POLE	0	MSKCC	GRCh37	12	133253211	133253211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	182	321	1	ENST00000320574.5:c.830A>T	p.Glu277Val	p.E277V	ENST00000320574	NM_006231.2	277	gAg/gTg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63530122	63530122	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	165	331	0	ENST00000307078.5:c.2313T>A	p.Cys771Ter	p.C771*	ENST00000307078	NM_004655.3	771	tgT/tgA																																																																														
INPP4B	0	MSKCC	GRCh37	4	143067069	143067069	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	68	231	0	ENST00000262992.4:c.1644del	p.Ser549ValfsTer16	p.S549Vfs*16	ENST00000262992	NM_001101669.1	548	ggC/gg																																																																														
DAXX	0	MSKCC	GRCh37	6	33289271	33289271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	208	246	0	ENST00000374542.5:c.281G>T	p.Arg94Leu	p.R94L	ENST00000374542	NM_001141970.1	94	cGt/cTt																																																																														
SMO	0	MSKCC	GRCh37	7	128851608	128851608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	234	339	0	ENST00000249373.3:c.1933C>A	p.Pro645Thr	p.P645T	ENST00000249373	NM_005631.4	645	Cca/Aca																																																																														
NEGR1	0	MSKCC	GRCh37	1	72076782	72076782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	60	404	0	ENST00000357731.5:c.715C>T	p.Arg239Cys	p.R239C	ENST00000357731	NM_173808.2	239	Cgc/Tgc																																																																														
BCOR	0	MSKCC	GRCh37	X	39932711	39932712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0030366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	304	264	0	ENST00000378444.4:c.1887_1888insAA	p.Glu630LysfsTer40	p.E630Kfs*40	ENST00000378444	NM_001123385.1	629	-/AA																																																																														
KDM6A	0	MSKCC	GRCh37	X	44879976	44879976	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0030366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	115	203	0	ENST00000377967.4:c.564+1G>C		p.X188_splice	ENST00000377967	NM_021140.2	188																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	88	395	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	75	335	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	47	325	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	38	323	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	35	175	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50455090	50455090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	63	313	1	ENST00000331340.3:c.637C>T	p.Arg213Ter	p.R213*	ENST00000331340	NM_006060.4	213	Cga/Tga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710645	114710645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	76	343	1	ENST00000543371.1:c.130G>T	p.Val44Phe	p.V44F	ENST00000543371	NM_001198531.1	44	Gtc/Ttc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737419	145737419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	88	497	0	ENST00000428558.2:c.3268G>A	p.Glu1090Lys	p.E1090K	ENST00000428558	NM_004260.3	1090	Gag/Aag																																																																														
SOX9	0	MSKCC	GRCh37	17	70120169	70120169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	95	277	1	ENST00000245479.2:c.1171C>T	p.Gln391Ter	p.Q391*	ENST00000245479	NM_000346.3	391	Cag/Tag																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30648470	30648470	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	63	357	1	ENST00000359013.4:c.94+1G>A		p.X32_splice	ENST00000359013	NM_001024847.2	32																																																																															
ARID1A	0	MSKCC	GRCh37	1	27088760	27088760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	67	475	0	ENST00000324856.7:c.2369del	p.Gln790ArgfsTer43	p.Q790Rfs*43	ENST00000324856	NM_006015.4	790	cAg/cg																																																																														
ELF3	0	MSKCC	GRCh37	1	201983123	201983123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	97	477	0	ENST00000359651.3:c.972G>A	p.Met324Ile	p.M324I	ENST00000359651		324	atG/atA																																																																														
AXL	0	MSKCC	GRCh37	19	41727844	41727844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	113	580	0	ENST00000301178.4:c.469A>G	p.Asn157Asp	p.N157D	ENST00000301178	NM_021913.4	157	Aac/Gac																																																																														
SOX17	0	MSKCC	GRCh37	8	55372478	55372478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	109	672	0	ENST00000297316.4:c.1168G>A	p.Asp390Asn	p.D390N	ENST00000297316	NM_022454.3	390	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	512	373	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	154	455	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	224	406	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487641	56487641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	197	442	2	ENST00000267101.3:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000267101	NM_001982.3	525	cGa/cAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094386	27094386	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	229	450	0	ENST00000324856.7:c.3094G>T	p.Glu1032Ter	p.E1032*	ENST00000324856	NM_006015.4	1032	Gag/Tag																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651963	36651963	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	393	459	0	ENST00000244741.5:c.85C>T	p.Gln29Ter	p.Q29*	ENST00000244741	NM_000389.4	29	Cag/Tag																																																																														
CIC	0	MSKCC	GRCh37	19	42796985	42796985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	300	672	1	ENST00000575354.2:c.3443C>T	p.Pro1148Leu	p.P1148L	ENST00000575354	NM_015125.3	1148	cCg/cTg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981550	201981551	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	328	651	0	ENST00000359651.3:c.467dup	p.Gly157ArgfsTer4	p.G157Rfs*4	ENST00000359651		155	gac/gaCc																																																																														
RET	0	MSKCC	GRCh37	10	43623584	43623584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	167	349	0	ENST00000355710.3:c.3212G>A	p.Gly1071Glu	p.G1071E	ENST00000355710	NM_020975.4	1071	gGa/gAa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18439817	18439817	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	142	400	0	ENST00000266497.5:c.715C>G	p.Gln239Glu	p.Q239E	ENST00000266497		239	Caa/Gaa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478935	56478935	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	272	542	0	ENST00000267101.3:c.391C>G	p.Leu131Val	p.L131V	ENST00000267101	NM_001982.3	131	Ctg/Gtg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906942	32906942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	180	423	0	ENST00000380152.3:c.1327G>A	p.Glu443Lys	p.E443K	ENST00000380152		443	Gag/Aag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3795316	3795316	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	198	470	0	ENST00000262367.5:c.3876G>C	p.Gln1292His	p.Q1292H	ENST00000262367	NM_004380.2	1292	caG/caC																																																																														
CDH1	0	MSKCC	GRCh37	16	68863674	68863674	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200894246		P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	194	411	1	ENST00000261769.5:c.2413G>A	p.Asp805Asn	p.D805N	ENST00000261769	NM_004360.3	805	Gat/Aat																																																																														
INSR	0	MSKCC	GRCh37	19	7170750	7170750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	268	540	1	ENST00000302850.5:c.1281C>A	p.Phe427Leu	p.F427L	ENST00000302850	NM_000208.2	427	ttC/ttA																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24175861	24175861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	200	458	0	ENST00000263121.7:c.1089G>T	p.Lys363Asn	p.K363N	ENST00000263121	NM_003073.3	363	aaG/aaT																																																																														
EP300	0	MSKCC	GRCh37	22	41569659	41569659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	119	297	0	ENST00000263253.7:c.4650G>T	p.Lys1550Asn	p.K1550N	ENST00000263253	NM_001429.3	1550	aaG/aaT																																																																														
EP300	0	MSKCC	GRCh37	22	41569713	41569716	+	frameshift_variant	Frame_Shift_Del	DEL	GAAG	GAAG	AAA			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	173	408	1	ENST00000263253.7:c.4704_4707delinsAAA	p.Lys1570AsnfsTer28	p.K1570Nfs*28	ENST00000263253	NM_001429.3	1568	aaGAAG/aaAAA																																																																														
EP300	0	MSKCC	GRCh37	22	41569773	41569773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	143	328	0	ENST00000263253.7:c.4764G>T	p.Met1588Ile	p.M1588I	ENST00000263253	NM_001429.3	1588	atG/atT																																																																														
EP300	0	MSKCC	GRCh37	22	41573438	41573438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	226	592	0	ENST00000263253.7:c.5723C>T	p.Pro1908Leu	p.P1908L	ENST00000263253	NM_001429.3	1908	cCa/cTa																																																																														
EP300	0	MSKCC	GRCh37	22	41573636	41573636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	206	592	0	ENST00000263253.7:c.5921G>C	p.Arg1974Thr	p.R1974T	ENST00000263253	NM_001429.3	1974	aGa/aCa																																																																														
EP300	0	MSKCC	GRCh37	22	41574326	41574326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	294	601	3	ENST00000263253.7:c.6611G>T	p.Gly2204Val	p.G2204V	ENST00000263253	NM_001429.3	2204	gGa/gTa																																																																														
KIT	0	MSKCC	GRCh37	4	55564578	55564578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	239	501	0	ENST00000288135.5:c.466C>T	p.Leu156Phe	p.L156F	ENST00000288135	NM_000222.2	156	Ctt/Ttt																																																																														
ROS1	0	MSKCC	GRCh37	6	117700313	117700313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	211	340	0	ENST00000368508.3:c.2506C>G	p.Leu836Val	p.L836V	ENST00000368508	NM_002944.2	836	Cta/Gta																																																																														
ATRX	0	MSKCC	GRCh37	X	76889176	76889176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	219	240	0	ENST00000373344.5:c.4834C>T	p.Leu1612Phe	p.L1612F	ENST00000373344	NM_000489.3	1612	Ctt/Ttt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0030407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	54	401	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0030407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	67	558	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
SESN2	0	MSKCC	GRCh37	1	28605709	28605709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	63	665	0	ENST00000253063.3:c.1313G>C	p.Arg438Thr	p.R438T	ENST00000253063	NM_031459.4	438	aGa/aCa																																																																														
AKT1	0	MSKCC	GRCh37	14	105241275	105241276	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0030407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	72	530	0	ENST00000349310.3:c.632_633del	p.Thr211SerfsTer45	p.T211Sfs*45	ENST00000349310	NM_001014432.1	211	aCA/a																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	400	679	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	244	587	1	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89456470	89456470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147450955		P-0030408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	281	379	3	ENST00000336596.2:c.1646C>T	p.Ala549Val	p.A549V	ENST00000336596	NM_005233.5	549	gCg/gTg																																																																														
JAK1	0	MSKCC	GRCh37	1	65310470	65310470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	333	510	0	ENST00000342505.4:c.2218C>T	p.Pro740Ser	p.P740S	ENST00000342505	NM_002227.2	740	Ccc/Tcc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591259	67591261	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0030408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	312	473	0	ENST00000274335.5:c.1759_1761delAAA	p.Lys587del	p.K587del	ENST00000274335		586	cAAAaa/caa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	12	316	0	ENST00000349496.5:c.109T>C	p.Ser37Pro	p.S37P	ENST00000349496	NM_001904.3	37	Tct/Cct																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191485	185191485	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	284	693	0	ENST00000265026.3:c.2368del	p.Leu790SerfsTer34	p.L790Sfs*34	ENST00000265026	NM_004721.4	789	tCc/tc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949983	44949996	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCAGTGGAACGG	TGGCAGTGGAACGG	-			P-0030410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	17	255	0	ENST00000377967.4:c.3753_3766del	p.Ala1252ArgfsTer34	p.A1252Rfs*34	ENST00000377967	NM_021140.2	1251	tTGGCAGTGGAACGG/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	68	460	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	117	620	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
MGA	0	MSKCC	GRCh37	15	42028490	42028490	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	116	467	0	ENST00000219905.7:c.4028A>T	p.Asn1343Ile	p.N1343I	ENST00000219905	NM_001164273.1	1343	aAc/aTc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88690568	88690571	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTCC	TTCC	-			P-0030411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	41	507	0	ENST00000360948.2:c.459_462del	p.Glu154CysfsTer48	p.E154Cfs*48	ENST00000360948	NM_001012338.2	153	cgGGAA/cg																																																																														
NF2	0	MSKCC	GRCh37	22	30069392	30069392	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	124	623	0	ENST00000338641.4:c.1258del	p.Glu420ArgfsTer6	p.E420Rfs*6	ENST00000338641	NM_000268.3	419	acG/ac																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12028657	12028657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	146	505	0	ENST00000353533.5:c.860G>A	p.Arg287His	p.R287H	ENST00000353533	NM_003010.3	287	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	333	564	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	202	414	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	346	619	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																														
APC	0	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	185	365	0	ENST00000257430.4:c.4497delA	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222726	5222726	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs779918003		P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	340	617	0	ENST00000357368.4:c.3077G>A	p.Arg1026His	p.R1026H	ENST00000357368	NM_002850.3	1026	cGc/cAc																																																																														
AMER1	0	MSKCC	GRCh37	X	63411777	63411777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	242	781	0	ENST00000330258.3:c.1390G>A	p.Ala464Thr	p.A464T	ENST00000330258	NM_152424.3	464	Gcc/Acc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259244	89259244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	131	459	0	ENST00000336596.2:c.388G>T	p.Asp130Tyr	p.D130Y	ENST00000336596	NM_005233.5	130	Gat/Tat																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877349	40877349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	435	409	0	ENST00000373198.4:c.2347G>C	p.Val783Leu	p.V783L	ENST00000373198	NM_133170.3	783	Gtg/Ctg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0030414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	56	311	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0030414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	390	595	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	75	313	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944512	40944512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	153	499	0	ENST00000373198.4:c.1990T>C	p.Phe664Leu	p.F664L	ENST00000373198	NM_133170.3	664	Ttt/Ctt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107135	27107136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	190	465	0	ENST00000324856.7:c.6747dupA	p.Glu2250ArgfsTer28	p.E2250Rfs*28	ENST00000324856	NM_006015.4	2249	tca/tcAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	163	364	0	ENST00000371953.3:c.635-1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
NKX3-1	0	MSKCC	GRCh37	8	23539056	23539056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	93	425	0	ENST00000380871.4:c.383G>A	p.Arg128Gln	p.R128Q	ENST00000380871	NM_006167.3	128	cGa/cAa																																																																														
POLD1	0	MSKCC	GRCh37	19	50919734	50919734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	57	589	0	ENST00000440232.2:c.2902C>T	p.Arg968Cys	p.R968C	ENST00000440232	NM_002691.3	968	Cgc/Tgc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372037	55372037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	163	355	1	ENST00000297316.4:c.727G>A	p.Gly243Arg	p.G243R	ENST00000297316	NM_022454.3	243	Ggg/Agg																																																																														
PGR	0	MSKCC	GRCh37	11	100998718	100998718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	139	601	1	ENST00000325455.5:c.1084G>A	p.Ala362Thr	p.A362T	ENST00000325455	NM_001202474.3	362	Gcg/Acg																																																																														
CASP8	0	MSKCC	GRCh37	2	202149996	202149996	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	177	558	1	ENST00000358485.4:c.1437G>A	p.Trp479Ter	p.W479*	ENST00000358485	NM_001080125.1	479	tgG/tgA																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426590	49426590	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	277	651	0	ENST00000301067.7:c.11898T>G	p.Phe3966Leu	p.F3966L	ENST00000301067	NM_003482.3	3966	ttT/ttG																																																																														
HGF	0	MSKCC	GRCh37	7	81335624	81335624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	178	450	0	ENST00000222390.5:c.1736T>C	p.Leu579Pro	p.L579P	ENST00000222390	NM_000601.4	579	cTg/cCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	40	418	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	24	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	41	555	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	86	622	1	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
APC	0	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	42	343	1	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713589	30713589	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	97	380	2	ENST00000359013.4:c.989T>G	p.Leu330Arg	p.L330R	ENST00000359013	NM_001024847.2	330	cTc/cGc																																																																														
SPEN	0	MSKCC	GRCh37	1	16199502	16199502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	46	402	0	ENST00000375759.3:c.275A>C	p.Asp92Ala	p.D92A	ENST00000375759	NM_015001.2	92	gAt/gCt																																																																														
CDK8	0	MSKCC	GRCh37	13	26975681	26975681	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	45	436	0	ENST00000381527.3:c.1189C>T	p.Gln397Ter	p.Q397*	ENST00000381527	NM_001260.1	397	Cag/Tag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223228	5223228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	86	623	1	ENST00000357368.4:c.2575G>A	p.Ala859Thr	p.A859T	ENST00000357368	NM_002850.3	859	Gcg/Acg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249504	153249504	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	85	491	2	ENST00000281708.4:c.1274G>A	p.Trp425Ter	p.W425*	ENST00000281708	NM_033632.3	425	tGg/tAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	184	416	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0030451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	295	658	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273045	18273045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	344	721	1	ENST00000222254.8:c.935C>T	p.Ala312Val	p.A312V	ENST00000222254	NM_005027.3	312	gCc/gTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	306	586	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0030452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	156	253	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TSC2	0	MSKCC	GRCh37	16	2103385	2103385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	599	814	0	ENST00000219476.3:c.268C>T	p.Gln90Ter	p.Q90*	ENST00000219476	NM_000548.3	90	Cag/Tag																																																																														
SLX4	0	MSKCC	GRCh37	16	3633501	3633501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	531	740	0	ENST00000294008.3:c.4750C>T	p.Arg1584Cys	p.R1584C	ENST00000294008	NM_032444.2	1584	Cgc/Tgc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58678134	58678134	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0030452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	175	534	0	ENST00000305921.3:c.359T>A	p.Leu120Ter	p.L120*	ENST00000305921	NM_003620.3	120	tTg/tAg																																																																														
FANCC	0	MSKCC	GRCh37	9	98011302	98011410	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAGTCAATACCACAAGTCCCGATTCTGGGTGGCATTCTGTCTTGGTGAAATCTGGTAGAGTCCCTGAAGTCAGAAAATAATTTCATTATTCTGGTCCACTACTTACCA	TCAGTCAATACCACAAGTCCCGATTCTGGGTGGCATTCTGTCTTGGTGAAATCTGGTAGAGTCCCTGAAGTCAGAAAATAATTTCATTATTCTGGTCCACTACTTACCA	-			P-0030452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	82	130	0	ENST00000289081.3:c.164_165+107del		p.X55_splice	ENST00000289081	NM_000136.2	55																																																																															
FAT1	0	MSKCC	GRCh37	4	187517697	187517697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	11	127	0	ENST00000441802.2:c.12997G>T	p.Asp4333Tyr	p.D4333Y	ENST00000441802	NM_005245.3	4333	Gac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	232	627	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	189	521	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222419	2222419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	123	445	0	ENST00000398665.3:c.3251G>A	p.Arg1084His	p.R1084H	ENST00000398665	NM_032482.2	1084	cGc/cAc																																																																														
MET	0	MSKCC	GRCh37	7	116412031	116412031	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	57	742	0	ENST00000397752.3:c.3016A>C	p.Thr1006Pro	p.T1006P	ENST00000397752	NM_000245.2	1006	Act/Cct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	108	436	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	75	668	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	113	402	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	94	495	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	117	399	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
AKT1	0	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	58	711	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	61	274	1	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
SOX17	0	MSKCC	GRCh37	8	55371801	55371801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	53	89	1	ENST00000297316.4:c.491C>T	p.Ala164Val	p.A164V	ENST00000297316	NM_022454.3	164	gCg/gTg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18793382	18793382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs77070108		P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	84	408	0	ENST00000266497.5:c.4079C>T	p.Ala1360Val	p.A1360V	ENST00000266497		1360	gCg/gTg																																																																														
SUZ12	0	MSKCC	GRCh37	17	30322718	30322718	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	146	530	0	ENST00000322652.5:c.1731A>T	p.Gln577His	p.Q577H	ENST00000322652	NM_015355.2	577	caA/caT																																																																														
EPHA7	0	MSKCC	GRCh37	6	94128980	94128980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	77	350	1	ENST00000369303.4:c.80C>T	p.Ala27Val	p.A27V	ENST00000369303	NM_004440.3	27	gCg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0030083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	26	368	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0030083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	52	367	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0030083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	40	298	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0030083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	46	356	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0030083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	22	231	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023768	27023769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0030083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	31	395	0	ENST00000324856.7:c.879dup	p.Thr294HisfsTer106	p.T294Hfs*106	ENST00000324856	NM_006015.4	292	acc/aCcc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120491052	120491052	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	13	229	0	ENST00000256646.2:c.2737G>C	p.Asp913His	p.D913H	ENST00000256646	NM_024408.3	913	Gat/Cat																																																																														
LMO1	0	MSKCC	GRCh37	11	8246198	8246198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	39	454	0	ENST00000335790.3:c.436C>A	p.Gln146Lys	p.Q146K	ENST00000335790	NM_002315.2	146	Cag/Aag																																																																														
BRCA1	0	MSKCC	GRCh37	17	41201161	41201161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	62	577	1	ENST00000357654.3:c.5383C>T	p.Leu1795Phe	p.L1795F	ENST00000357654	NM_007294.3	1795	Ctt/Ttt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713360	40713360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	56	473	0	ENST00000373198.4:c.4155G>C	p.Gln1385His	p.Q1385H	ENST00000373198	NM_133170.3	1385	caG/caC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	215	453	1				ENST00000310581	NM_198253.2																																																																																
RB1	0	MSKCC	GRCh37	13	49047507	49047507	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	93	90	0	ENST00000267163.4:c.2501C>G	p.Ser834Ter	p.S834*	ENST00000267163	NM_000321.2	834	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	471	571	0	ENST00000269305.4:c.706T>A	p.Tyr236Asn	p.Y236N	ENST00000269305	NM_001126112.2	236	Tac/Aac																																																																														
BRCA2	0	MSKCC	GRCh37	13	32953560	32953560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	223	503	0	ENST00000380152.3:c.8861C>T	p.Ser2954Phe	p.S2954F	ENST00000380152		2954	tCt/tTt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41222959	41222959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	185	551	0	ENST00000357654.3:c.4972A>G	p.Thr1658Ala	p.T1658A	ENST00000357654	NM_007294.3	1658	Acc/Gcc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8389381	8389381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	93	348	0	ENST00000356435.5:c.4237G>A	p.Ala1413Thr	p.A1413T	ENST00000356435		1413	Gcc/Acc																																																																														
RB1	0	MSKCC	GRCh37	13	48923159	48923159	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0030339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	58	282	0	ENST00000267163.4:c.607+1del		p.G203fs	ENST00000267163	NM_000321.2	203	Ggg/gg																																																																														
SPEN	0	MSKCC	GRCh37	1	16264049	16264049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	221	667	0	ENST00000375759.3:c.10418T>C	p.Leu3473Pro	p.L3473P	ENST00000375759	NM_015001.2	3473	cTg/cCg																																																																														
AKT3	0	MSKCC	GRCh37	1	243828107	243828107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	108	424	0	ENST00000263826.5:c.251A>G	p.Glu84Gly	p.E84G	ENST00000263826	NM_005465.4	84	gAg/gGg																																																																														
FGF3	0	MSKCC	GRCh37	11	69633561	69633561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	85	192	0	ENST00000334134.2:c.141G>T	p.Lys47Asn	p.K47N	ENST00000334134	NM_005247.2	47	aaG/aaT																																																																														
POLE	0	MSKCC	GRCh37	12	133202715	133202716	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0030339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	161	452	0	ENST00000320574.5:c.6518_6519del	p.Ser2173PhefsTer130	p.S2173Ffs*130	ENST00000320574	NM_006231.2	2173	tCT/t																																																																														
POLE	0	MSKCC	GRCh37	12	133240697	133240697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	124	548	0	ENST00000320574.5:c.2599G>T	p.Val867Phe	p.V867F	ENST00000320574	NM_006231.2	867	Gtc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7578188	7578200	+	frameshift_variant	Frame_Shift_Del	DEL	CATAGGGCACCAC	CATAGGGCACCAC	-			P-0030339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	601	598	0	ENST00000269305.4:c.649_661del	p.Val217SerfsTer26	p.V217Sfs*26	ENST00000269305	NM_001126112.2	217	GTGGTGCCCTATGag/ag																																																																														
ACVR1	0	MSKCC	GRCh37	2	158634750	158634750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	36	394	0	ENST00000263640.3:c.436C>G	p.Leu146Val	p.L146V	ENST00000263640	NM_001105.4	146	Ctc/Gtc																																																																														
TERT	0	MSKCC	GRCh37	5	1293832	1293832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	94	681	2	ENST00000310581.5:c.1169G>A	p.Arg390Gln	p.R390Q	ENST00000310581	NM_198253.2	390	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112176777	112176777	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	246	329	0	ENST00000257430.4:c.5486A>G	p.Asn1829Ser	p.N1829S	ENST00000257430	NM_000038.5	1829	aAt/aGt																																																																														
MED12	0	MSKCC	GRCh37	X	70349972	70349972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	253	605	1	ENST00000374080.3:c.3955C>T	p.Arg1319Cys	p.R1319C	ENST00000374080		1319	Cgc/Tgc																																																																														
ATRX	0	MSKCC	GRCh37	X	76938440	76938440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	29	534	0	ENST00000373344.5:c.2308C>G	p.Gln770Glu	p.Q770E	ENST00000373344	NM_000489.3	770	Cag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	384	477	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271898	15271898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	314	630	1	ENST00000263388.2:c.6541C>T	p.Pro2181Ser	p.P2181S	ENST00000263388	NM_000435.2	2181	Cca/Tca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	219	354	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0030341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	553	676	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
NEGR1	0	MSKCC	GRCh37	1	72058505	72058505	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	122	374	0	ENST00000357731.5:c.935T>G	p.Leu312Arg	p.L312R	ENST00000357731	NM_173808.2	312	cTt/cGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32893421	32893430	+	frameshift_variant	Frame_Shift_Del	DEL	AATCTCCTGT	AATCTCCTGT	-			P-0030341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	97	438	0	ENST00000380152.3:c.277_286del	p.Ser93LysfsTer3	p.S93Kfs*3	ENST00000380152		92	cAATCTCCTGTa/ca																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7982743	7982743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	121	454	0	ENST00000319144.4:c.1042G>A	p.Glu348Lys	p.E348K	ENST00000319144	NM_001139.2	348	Gag/Aag																																																																														
POLD1	0	MSKCC	GRCh37	19	50906830	50906841	+	inframe_deletion	In_Frame_Del	DEL	CATCTCTCGGGC	CATCTCTCGGGC	-			P-0030341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	76	506	0	ENST00000440232.2:c.1219_1230del	p.Ile407_Ala410del	p.I407_A410del	ENST00000440232	NM_002691.3	406	ctCATCTCTCGGGCc/ctc																																																																														
RRAS2	0	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	104	505	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
CXCR4	0	MSKCC	GRCh37	2	136872894	136872894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	261	450	0	ENST00000241393.3:c.604C>A	p.Gln202Lys	p.Q202K	ENST00000241393	NM_003467.2	202	Cag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577118	7577120	+	missense_variant	Missense_Mutation	ONP	CAC	CAC	AAA			P-0030345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	343	593	0	ENST00000269305.4:c.818_820delinsTTT	p.Arg273_Val274delinsLeuPhe	p.R273_V274delinsLF	ENST00000269305	NM_001126112.2	273	cGTGtt/cTTTtt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	245	278	0				ENST00000310581	NM_198253.2																																																																																
BRCA1	0	MSKCC	GRCh37	17	41223166	41223166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	144	547	0	ENST00000357654.3:c.4765C>T	p.Arg1589Cys	p.R1589C	ENST00000357654	NM_007294.3	1589	Cgt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107224	27107225	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0030346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	202	422	0	ENST00000324856.7:c.6835_6836del	p.Leu2279ValfsTer105	p.L2279Vfs*105	ENST00000324856	NM_006015.4	2279	CTg/g																																																																														
AR	0	MSKCC	GRCh37	X	66766421	66766421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	41	169	0	ENST00000374690.3:c.1433T>C	p.Val478Ala	p.V478A	ENST00000374690	NM_000044.3	478	gTa/gCa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	759	565	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0030347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	88	529	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023151	27023179	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	-			P-0030347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	173	66	1	ENST00000324856.7:c.267_295del	p.Ser90ProfsTer11	p.S90Pfs*11	ENST00000324856	NM_006015.4	86	gGCGGAGCCGGCAGCGGCGGCGGGCCCGGC/g																																																																														
PTEN	0	MSKCC	GRCh37	10	89720858	89720858	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	294	319	0	ENST00000371953.3:c.1012del	p.Ser338LeufsTer6	p.S338Lfs*6	ENST00000371953	NM_000314.4	337	Ttt/tt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101702	27101703	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0030347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	321	605	0	ENST00000324856.7:c.4985_4986del	p.Lys1662ArgfsTer35	p.K1662Rfs*35	ENST00000324856	NM_006015.4	1662	AAa/a																																																																														
KDM6A	0	MSKCC	GRCh37	X	44945145	44945146	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0030347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	86	488	0	ENST00000377967.4:c.3470_3471del	p.Ile1157LysfsTer6	p.I1157Kfs*6	ENST00000377967	NM_021140.2	1157	ATa/a																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	38	322	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	56	717	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
TET2	0	MSKCC	GRCh37	4	106162495	106162495	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0030348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	30	298	0	ENST00000380013.4:c.3410-1G>C		p.X1137_splice	ENST00000380013	NM_001127208.2	1137																																																																															
U2AF1	0	MSKCC	GRCh37	21	44524475	44524475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	112	360	0	ENST00000291552.4:c.82C>T	p.Arg28Cys	p.R28C	ENST00000291552	NM_006758.2	28	Cgt/Tgt																																																																														
POLE	0	MSKCC	GRCh37	12	133253969	133253969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	70	655	0	ENST00000320574.5:c.781G>A	p.Asp261Asn	p.D261N	ENST00000320574	NM_006231.2	261	Gat/Aat																																																																														
RECQL	0	MSKCC	GRCh37	12	21639499	21639499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	36	390	0	ENST00000421138.2:c.415C>T	p.Pro139Ser	p.P139S	ENST00000421138		139	Cca/Tca																																																																														
HNF1A	0	MSKCC	GRCh37	12	121437296	121437296	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	84	740	0	ENST00000257555.6:c.1634C>G	p.Ser545Ter	p.S545*	ENST00000257555		545	tCa/tGa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274154	10274154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	43	477	0	ENST00000330684.3:c.115A>G	p.Met39Val	p.M39V	ENST00000330684	NM_001134407.1	39	Atg/Gtg																																																																														
PPARG	0	MSKCC	GRCh37	3	12422838	12422838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	97	493	0	ENST00000287820.6:c.328C>T	p.Pro110Ser	p.P110S	ENST00000287820	NM_015869.4	110	Cct/Tct																																																																														
RYBP	0	MSKCC	GRCh37	3	72495670	72495676	+	frameshift_variant	Frame_Shift_Del	DEL	ATCGCAG	ATCGCAG	-			P-0030348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	43	339	0	ENST00000477973.2:c.394_400del	p.Ile132MetfsTer2	p.I132Mfs*2	ENST00000477973	NM_012234.5	132	atCTGCGAT/at																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139894	55139894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	41	299	0	ENST00000257290.5:c.1555C>T	p.Pro519Ser	p.P519S	ENST00000257290	NM_006206.4	519	Ccc/Tcc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922825	44922826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCAG			P-0030348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	66	211	0	ENST00000377967.4:c.1686_1687insGCAG	p.Pro563AlafsTer19	p.P563Afs*19	ENST00000377967	NM_021140.2	562	-/GCAG																																																																														
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	538	803	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
SETD2	0	MSKCC	GRCh37	3	47144897	47144898	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GAGTGGCATCTATTATCTGGGAGAAGAGGATC			P-0010343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	82	470	0	ENST00000409792.3:c.4840-16_4855dup	p.Gln1619ArgfsTer7	p.Q1619Rfs*7	ENST00000409792	NM_014159.6	1619	caa/cGATCCTCTTCTCCCAGATAATAGATGCCACTCaa																																																																														
TSC2	0	MSKCC	GRCh37	16	2122931	2122931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			964	59	875	0	ENST00000219476.3:c.2302C>G	p.Pro768Ala	p.P768A	ENST00000219476	NM_000548.3	768	Cca/Gca																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604696	48604699	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	GAAA	GAAA	TTGAT			P-0010343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	249	501	1	ENST00000342988.3:c.1518_1521delinsTTGAT	p.Lys507Ter	p.K507*	ENST00000342988	NM_005359.5	506	gtGAAA/gtTTGAT																																																																														
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012630-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	491	677	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																														
AXIN1	0	MSKCC	GRCh37	16	354369	354369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012630-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			774	254	682	0	ENST00000262320.3:c.1189G>A	p.Glu397Lys	p.E397K	ENST00000262320	NM_003502.3	397	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0030255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	39	602	0				ENST00000310581	NM_198253.2																																																																																
NRAS	0	MSKCC	GRCh37	1	115256529	115256530	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0030255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	20	663	1	ENST00000369535.4:c.181_182delinsAG	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	CAa/AGa																																																																														
RB1	0	MSKCC	GRCh37	13	48953742	48953742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	26	303	0	ENST00000267163.4:c.1345G>A	p.Gly449Arg	p.G449R	ENST00000267163	NM_000321.2	449	Gga/Aga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	49	753	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1403	161	714	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
RB1	5925	MSKCC	GRCh37	13	48878127	48878127	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1276653645		P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	116	154	0	ENST00000267163.4:c.83del	p.Pro28LeufsTer37	p.P28Lfs*37	ENST00000267163	NM_000321.2	27	Ccc/cc																																																																														
RAD51D	0	MSKCC	GRCh37	17	33427997	33427997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	102	650	2	ENST00000335858.7:c.626C>T	p.Ala209Val	p.A209V	ENST00000335858	NM_133629.2	209	gCc/gTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	60	582	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
KIT	0	MSKCC	GRCh37	4	55598066	55598066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201165084		P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	58	488	0	ENST00000288135.5:c.2263G>A	p.Ala755Thr	p.A755T	ENST00000288135	NM_000222.2	755	Gcc/Acc																																																																														
SOX2	0	MSKCC	GRCh37	3	181430901	181430901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1749	531	781	1	ENST00000325404.1:c.758del	p.Pro253LeufsTer21	p.P253Lfs*21	ENST00000325404	NM_003106.3	251	agC/ag																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1513	218	671	3	ENST00000334205.4:c.2287delC	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458435	120458436	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	102	500	0	ENST00000256646.2:c.6909dupC	p.Ile2304HisfsTer9	p.I2304Hfs*9	ENST00000256646	NM_024408.3	2303	-/C																																																																														
GATA3	0	MSKCC	GRCh37	10	8115751	8115751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	95	584	0	ENST00000346208.3:c.1097G>A	p.Arg366Gln	p.R366Q	ENST00000346208		366	cGa/cAa																																																																														
ERG	0	MSKCC	GRCh37	21	39817414	39817414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	113	459	1	ENST00000288319.7:c.149G>A	p.Arg50His	p.R50H	ENST00000288319	NM_182918.3	50	cGc/cAc																																																																														
WWTR1	0	MSKCC	GRCh37	3	149374909	149374909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1638	232	589	0	ENST00000360632.3:c.185C>G	p.Ser62Trp	p.S62W	ENST00000360632	NM_015472.4	62	tCg/tGg																																																																														
PDCD1	0	MSKCC	GRCh37	2	242795061	242795061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1795	212	961	0	ENST00000334409.5:c.148G>A	p.Ala50Thr	p.A50T	ENST00000334409	NM_005018.2	50	Gcc/Acc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421039	49421039	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	107	522	1	ENST00000301067.7:c.14710C>T	p.Arg4904Ter	p.R4904*	ENST00000301067	NM_003482.3	4904	Cga/Tga																																																																														
POLE	0	MSKCC	GRCh37	12	133245435	133245435	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1387	128	708	0	ENST00000320574.5:c.1885delG	p.Ala629ProfsTer8	p.A629Pfs*8	ENST00000320574	NM_006231.2	629	Gcc/cc																																																																														
TEK	0	MSKCC	GRCh37	9	27158131	27158131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	79	494	0	ENST00000380036.4:c.355C>T	p.Arg119Cys	p.R119C	ENST00000380036	NM_000459.3	119	Cgt/Tgt																																																																														
TSC2	0	MSKCC	GRCh37	16	2100464	2100464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	80	641	5	ENST00000219476.3:c.202G>A	p.Ala68Thr	p.A68T	ENST00000219476	NM_000548.3	68	Gca/Aca																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643503	38643503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	76	658	0	ENST00000299084.4:c.973C>T	p.Arg325Ter	p.R325*	ENST00000299084	NM_152594.2	325	Cga/Tga																																																																														
PNRC1	0	MSKCC	GRCh37	6	89791150	89791151	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	97	134	0	ENST00000336032.3:c.539_540del	p.Glu180GlyfsTer27	p.E180Gfs*27	ENST00000336032	NM_006813.2	179	aaAGag/aaag																																																																														
TMEM127	0	MSKCC	GRCh37	2	96920586	96920586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	75	354	1	ENST00000258439.3:c.394G>A	p.Ala132Thr	p.A132T	ENST00000258439	NM_001193304.2	132	Gcc/Acc																																																																														
RRAGC	0	MSKCC	GRCh37	1	39305233	39305233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	119	484	1	ENST00000373001.3:c.1192G>A	p.Ala398Thr	p.A398T	ENST00000373001	NM_022157.3	398	Gcc/Acc																																																																														
NEGR1	0	MSKCC	GRCh37	1	72058517	72058517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	65	409	0	ENST00000357731.5:c.923C>T	p.Ala308Val	p.A308V	ENST00000357731	NM_173808.2	308	gCg/gTg																																																																														
SHOC2	0	MSKCC	GRCh37	10	112760182	112760182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	38	503	0	ENST00000369452.4:c.851C>G	p.Ser284Cys	p.S284C	ENST00000369452	NM_007373.3	284	tCc/tGc																																																																														
RRAS2	0	MSKCC	GRCh37	11	14317388	14317388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	48	447	0	ENST00000256196.4:c.122C>T	p.Thr41Met	p.T41M	ENST00000256196		41	aCg/aTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344836	118344836	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	40	387	0	ENST00000534358.1:c.2962A>C	p.Thr988Pro	p.T988P	ENST00000534358	NM_005933.3	988	Acc/Ccc																																																																														
KDM5A	0	MSKCC	GRCh37	12	475260	475260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	78	576	0	ENST00000399788.2:c.377G>A	p.Ser126Asn	p.S126N	ENST00000399788	NM_001042603.1	126	aGc/aAc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856347	111856347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	110	130	0	ENST00000341259.2:c.398G>A	p.Cys133Tyr	p.C133Y	ENST00000341259	NM_005475.2	133	tGc/tAc																																																																														
PTPN11	0	MSKCC	GRCh37	12	112926932	112926932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	91	540	0	ENST00000351677.2:c.1552G>T	p.Val518Phe	p.V518F	ENST00000351677	NM_002834.3	518	Gtc/Ttc																																																																														
POLE	0	MSKCC	GRCh37	12	133220564	133220564	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	86	475	0	ENST00000320574.5:c.4150-1G>T		p.X1384_splice	ENST00000320574	NM_006231.2	1384																																																																															
FLT1	0	MSKCC	GRCh37	13	29001919	29001919	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	74	564	1	ENST00000282397.4:c.1246A>T	p.Lys416Ter	p.K416*	ENST00000282397	NM_002019.4	416	Aaa/Taa																																																																														
IGF1R	0	MSKCC	GRCh37	15	99442843	99442843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	90	515	0	ENST00000268035.6:c.1240C>A	p.Leu414Ile	p.L414I	ENST00000268035	NM_000875.3	414	Cta/Ata																																																																														
ERCC4	0	MSKCC	GRCh37	16	14024693	14024693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	39	496	1	ENST00000311895.7:c.919C>A	p.Leu307Ile	p.L307I	ENST00000311895	NM_005236.2	307	Ctt/Att																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216642	36216642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	176	696	0	ENST00000222270.7:c.3808C>T	p.Arg1270Cys	p.R1270C	ENST00000222270	NM_014727.1	1270	Cgc/Tgc																																																																														
POLD1	0	MSKCC	GRCh37	19	50919028	50919028	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1678	146	628	0	ENST00000440232.2:c.2765T>C	p.Val922Ala	p.V922A	ENST00000440232	NM_002691.3	922	gTc/gCc																																																																														
ALK	0	MSKCC	GRCh37	2	29462638	29462638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1490	165	767	1	ENST00000389048.3:c.2263C>A	p.His755Asn	p.H755N	ENST00000389048	NM_004304.4	755	Cac/Aac																																																																														
EP300	0	MSKCC	GRCh37	22	41513694	41513694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	160	627	0	ENST00000263253.7:c.598C>T	p.Arg200Ter	p.R200*	ENST00000263253	NM_001429.3	200	Cga/Tga																																																																														
MITF	0	MSKCC	GRCh37	3	70014358	70014358	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	126	559	1	ENST00000352241.4:c.1522A>T	p.Arg508Trp	p.R508W	ENST00000352241	NM_198159.2	508	Agg/Tgg																																																																														
SOX2	0	MSKCC	GRCh37	3	181430180	181430180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	112	168	1	ENST00000325404.1:c.32C>A	p.Pro11Gln	p.P11Q	ENST00000325404	NM_003106.3	11	cCg/cAg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176517474	176517474	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200344385		P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1508	166	735	5	ENST00000292408.4:c.175C>T	p.Arg59Trp	p.R59W	ENST00000292408	NM_213647.1	59	Cgg/Tgg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910568	29910572	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCC	GTCCC	-			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1833	189	796	0	ENST00000376809.5:c.109_113del	p.Ser37AlafsTer60	p.S37Afs*60	ENST00000376809	NM_002116.7	36	gtGTCCCgg/gtgg																																																																														
TAP2	0	MSKCC	GRCh37	6	32800483	32800483	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1824	219	903	0	ENST00000374899.4:c.1064A>T	p.Tyr355Phe	p.Y355F	ENST00000374899	NM_018833.2	355	tAt/tTt																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137522040	137522041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	24	342	0	ENST00000367739.4:c.838dup	p.Ser280LysfsTer22	p.S280Kfs*22	ENST00000367739	NM_000416.2	280	agc/aAgc																																																																														
EGFR	0	MSKCC	GRCh37	7	55220334	55220334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1350	279	635	2	ENST00000275493.2:c.724G>T	p.Gly242Cys	p.G242C	ENST00000275493	NM_005228.3	242	Ggc/Tgc																																																																														
EGFR	0	MSKCC	GRCh37	7	55231458	55231458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1349	116	600	0	ENST00000275493.2:c.1664G>A	p.Cys555Tyr	p.C555Y	ENST00000275493	NM_005228.3	555	tGc/tAc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38271189	38271189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	136	489	0	ENST00000425967.3:c.2519G>A	p.Arg840Gln	p.R840Q	ENST00000425967	NM_001174067.1	840	cGa/cAa																																																																														
SOX17	0	MSKCC	GRCh37	8	55372050	55372050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1290	140	436	2	ENST00000297316.4:c.740C>T	p.Ala247Val	p.A247V	ENST00000297316	NM_022454.3	247	gCg/gTg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981732	70981732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1764	150	818	2	ENST00000276594.2:c.364G>A	p.Ala122Thr	p.A122T	ENST00000276594	NM_024504.3	122	Gcg/Acg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413959	139413959	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1543	187	848	0	ENST00000277541.6:c.801G>C	p.Lys267Asn	p.K267N	ENST00000277541	NM_017617.3	267	aaG/aaC																																																																														
STAG2	0	MSKCC	GRCh37	X	123227872	123227872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	45	366	0	ENST00000218089.9:c.3583C>T	p.Arg1195Cys	p.R1195C	ENST00000218089	NM_001042749.1	1195	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	280	531	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	100	250	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	178	463	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	237	469	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FGFR1	0	MSKCC	GRCh37	8	38285938	38285938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	188	498	1	ENST00000425967.3:c.473C>T	p.Ser158Leu	p.S158L	ENST00000425967	NM_001174067.1	158	tCg/tTg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44923060	44923060	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	265	546	0	ENST00000377967.4:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000377967	NM_021140.2	641	Cag/Tag																																																																														
GATA3	0	MSKCC	GRCh37	10	8115963	8115964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	126	282	0	ENST00000346208.3:c.1310_1311dup	p.Met438AlafsTer38	p.M438Afs*38	ENST00000346208		437	agc/aGCgc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748660	43748660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	309	786	0	ENST00000382044.4:c.2146G>C	p.Glu716Gln	p.E716Q	ENST00000382044	NM_001141980.1	716	Gaa/Caa																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748786	43748786	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	275	712	0	ENST00000382044.4:c.2020G>C	p.Glu674Gln	p.E674Q	ENST00000382044	NM_001141980.1	674	Gag/Cag																																																																														
INHA	0	MSKCC	GRCh37	2	220439427	220439427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			38	91	309	0	ENST00000243786.2:c.280G>A	p.Glu94Lys	p.E94K	ENST00000243786	NM_002191.3	94	Gag/Aag																																																																														
MYD88	0	MSKCC	GRCh37	3	38180462	38180462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	219	454	1	ENST00000396334.3:c.310G>A	p.Glu104Lys	p.E104K	ENST00000396334	NM_002468.4	104	Gag/Aag																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651941	36651942	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			76	412	519	0	ENST00000244741.5:c.65dup	p.Gly23ArgfsTer13	p.G23Rfs*13	ENST00000244741	NM_000389.4	21	-/T																																																																														
IGF2	0	MSKCC	GRCh37	11	2154344	2154344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	55	766	0	ENST00000434045.2:c.584G>A	p.Gly195Asp	p.G195D	ENST00000434045	NM_001127598.1	195	gGt/gAt																																																																														
LATS1	0	MSKCC	GRCh37	6	149983263	149983264	+	missense_variant	Missense_Mutation	DNP	TC	TC	CG			P-0024039-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	37	573	0	ENST00000253339.5:c.2994_2995delinsCG	p.Lys998_Asn999delinsAsnAsp	p.K998_N999delinsND	ENST00000253339		998	aaGAat/aaCGat																																																																														
DDR2	0	MSKCC	GRCh37	1	162749902	162749902	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0030122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	87	332	0	ENST00000367921.3:c.2434A>G	p.Thr812Ala	p.T812A	ENST00000367921	NM_006182.2	812	Act/Gct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	28	395	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879580	37879580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	57	498	1	ENST00000269571.5:c.1955C>T	p.Thr652Met	p.T652M	ENST00000269571		652	aCg/aTg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	10	558	0	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																														
JAK3	0	MSKCC	GRCh37	19	17954586	17954586	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	12	631	0	ENST00000458235.1:c.308G>A	p.Arg103His	p.R103H	ENST00000458235	NM_000215.3	103	cGc/cAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138602	11138602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	10	499	0	ENST00000344626.4:c.3358G>A	p.Gly1120Ser	p.G1120S	ENST00000344626	NM_003072.3	1120	Ggc/Agc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	30	450	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0030127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	12	395	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PARP1	0	MSKCC	GRCh37	1	226579987	226579987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	54	492	0	ENST00000366794.5:c.315G>T	p.Lys105Asn	p.K105N	ENST00000366794	NM_001618.3	105	aaG/aaT																																																																														
MED12	0	MSKCC	GRCh37	X	70342056	70342056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	28	174	0	ENST00000374080.3:c.1108C>G	p.Leu370Val	p.L370V	ENST00000374080		370	Ctc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	230	353	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	174	318	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	106	428	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	114	336	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636820	8636820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	248	341	0	ENST00000356435.5:c.89C>T	p.Pro30Leu	p.P30L	ENST00000356435		30	cCc/cTc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751886972		P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	541	450	0	ENST00000373198.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000373198	NM_133170.3	413	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577115	7577128	+	frameshift_variant	Frame_Shift_Del	DEL	AAACACGCACCTCA	AAACACGCACCTCA	-			P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	332	654	0	ENST00000269305.4:c.810_823del	p.Phe270LeufsTer31	p.F270Lfs*31	ENST00000269305	NM_001126112.2	270	ttTGAGGTGCGTGTTTgt/ttgt																																																																														
NF1	0	MSKCC	GRCh37	17	29556208	29556208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	58	219	0	ENST00000358273.4:c.2575G>T	p.Gly859Cys	p.G859C	ENST00000358273	NM_001042492.2	859	Ggc/Tgc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41818322	41818322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	22	28	0	ENST00000373198.4:c.52C>T	p.Pro18Ser	p.P18S	ENST00000373198	NM_133170.3	18	Ccg/Tcg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	238	377	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	140	290	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66905872	66905872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	124	349	0	ENST00000374690.3:c.1789G>A	p.Ala597Thr	p.A597T	ENST00000374690	NM_000044.3	597	Gcc/Acc																																																																														
AMER1	0	MSKCC	GRCh37	X	63411411	63411411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	221	590	1	ENST00000330258.3:c.1756C>T	p.Arg586Ter	p.R586*	ENST00000330258	NM_152424.3	586	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097629	27097629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	211	467	0	ENST00000324856.7:c.3218G>A	p.Trp1073Ter	p.W1073*	ENST00000324856	NM_006015.4	1073	tGg/tAg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119945	70119946	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	GTA			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	292	311	0	ENST00000245479.2:c.948_949insTAG	p.Thr316_Gly317insTer	p.T316_G317ins*	ENST00000245479	NM_000346.3	316	acg/acGTAg																																																																														
APC	0	MSKCC	GRCh37	5	112173560	112173560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	131	295	0	ENST00000257430.4:c.2269C>T	p.Gln757Ter	p.Q757*	ENST00000257430	NM_000038.5	757	Caa/Taa																																																																														
MDC1	0	MSKCC	GRCh37	6	30679900	30679900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	145	388	0	ENST00000376406.3:c.1819G>A	p.Gly607Arg	p.G607R	ENST00000376406	NM_014641.2	607	Ggg/Agg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101907104	101907105	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TACT			P-0030131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	122	430	0	ENST00000374994.4:c.1064_1065insTACT	p.Val356ThrfsTer5	p.V356Tfs*5	ENST00000374994	NM_004612.2	355	gca/gcTACTa																																																																														
GATA3	0	MSKCC	GRCh37	10	8115874	8115874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	112	480	0	ENST00000346208.3:c.1220C>T	p.Ser407Leu	p.S407L	ENST00000346208		407	tCg/tTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0030133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	132	295	0				ENST00000310581	NM_198253.2																																																																																
DDR2	0	MSKCC	GRCh37	1	162742035	162742035	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	64	294	0	ENST00000367921.3:c.1726G>A	p.Glu576Lys	p.E576K	ENST00000367921	NM_006182.2	576	Gag/Aag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482363	56482363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	109	398	0	ENST00000267101.3:c.911C>T	p.Ala304Val	p.A304V	ENST00000267101	NM_001982.3	304	gCc/gTc																																																																														
POLE	0	MSKCC	GRCh37	12	133218952	133218952	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	119	642	0	ENST00000320574.5:c.4984G>C	p.Glu1662Gln	p.E1662Q	ENST00000320574	NM_006231.2	1662	Gag/Cag																																																																														
ESR1	0	MSKCC	GRCh37	6	152332930	152332930	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0030133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	43	228	0	ENST00000206249.3:c.1235+1G>T		p.X412_splice	ENST00000206249	NM_000125.3	412																																																																															
KDM6A	0	MSKCC	GRCh37	X	44929354	44929354	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	131	329	0	ENST00000377967.4:c.2454del	p.Pro819HisfsTer48	p.P819Hfs*48	ENST00000377967	NM_021140.2	818	tcA/tc																																																																														
BCL10	0	MSKCC	GRCh37	1	85733356	85733356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	48	530	1	ENST00000370580.1:c.656G>T	p.Ser219Ile	p.S219I	ENST00000370580	NM_003921.4	219	aGt/aTt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514934	103514934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	119	320	0	ENST00000355739.4:c.1435G>A	p.Val479Ile	p.V479I	ENST00000355739	NM_000123.3	479	Gtt/Att																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	463	573	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
STK11	0	MSKCC	GRCh37	19	1220596	1220602	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCGGA	CGGCGGA	-			P-0030134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	429	642	0	ENST00000326873.7:c.616_622del	p.Ala206ThrfsTer79	p.A206Tfs*79	ENST00000326873	NM_000455.4	205	gCGGCGGAc/gc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149457743	149457743	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	219	602	0	ENST00000286301.3:c.661C>T	p.Gln221Ter	p.Q221*	ENST00000286301	NM_005211.3	221	Cag/Tag																																																																														
PREX2	0	MSKCC	GRCh37	8	69021810	69021810	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	134	562	0	ENST00000288368.4:c.3098T>G	p.Leu1033Arg	p.L1033R	ENST00000288368	NM_024870.2	1033	cTt/cGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	239	445	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	104	379	0				ENST00000310581	NM_198253.2																																																																																
CBL	0	MSKCC	GRCh37	11	119167635	119167635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	111	427	0	ENST00000264033.4:c.2044C>T	p.Pro682Ser	p.P682S	ENST00000264033	NM_005188.3	682	Cct/Tct																																																																														
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs759145490		P-0030135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	83	337	0	ENST00000222390.5:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000222390	NM_000601.4	424	Cgt/Tgt																																																																														
KDR	3791	MSKCC	GRCh37	4	55953820	55953820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	119	528	0	ENST00000263923.4:c.3616G>A	p.Glu1206Lys	p.E1206K	ENST00000263923	NM_002253.2	1206	Gaa/Aaa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351685	89351685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	231	729	0	ENST00000301030.4:c.1265C>T	p.Thr422Ile	p.T422I	ENST00000301030	NM_001256183.1	422	aCa/aTa																																																																														
IRS2	0	MSKCC	GRCh37	13	110435925	110435925	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	123	708	0	ENST00000375856.3:c.2476A>T	p.Met826Leu	p.M826L	ENST00000375856	NM_003749.2	826	Atg/Ttg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993746	72993746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	27	487	0	ENST00000268489.5:c.299C>T	p.Pro100Leu	p.P100L	ENST00000268489	NM_006885.3	100	cCc/cTc																																																																														
CARM1	0	MSKCC	GRCh37	19	11031182	11031182	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	190	760	0	ENST00000327064.4:c.1267C>T	p.Gln423Ter	p.Q423*	ENST00000327064	NM_199141.1	423	Cag/Tag																																																																														
PRDM1	0	MSKCC	GRCh37	6	106555057	106555057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	138	532	0	ENST00000369096.4:c.2174G>T	p.Arg725Leu	p.R725L	ENST00000369096	NM_001198.3	725	cGa/cTa																																																																														
ATRX	0	MSKCC	GRCh37	X	76937250	76937250	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	31	510	0	ENST00000373344.5:c.3498A>T	p.Lys1166Asn	p.K1166N	ENST00000373344	NM_000489.3	1166	aaA/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	395	612	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	220	397	1	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag																																																																														
UPF1	0	MSKCC	GRCh37	19	18974314	18974314	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	328	635	0	ENST00000262803.5:c.2668A>G	p.Asn890Asp	p.N890D	ENST00000262803	NM_002911.3	890	Aac/Gac																																																																														
MITF	0	MSKCC	GRCh37	3	70014047	70014047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	136	473	1	ENST00000352241.4:c.1211C>T	p.Thr404Met	p.T404M	ENST00000352241	NM_198159.2	404	aCg/aTg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526719	31526719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	115	692	1	ENST00000344624.3:c.321G>A	p.Met107Ile	p.M107I	ENST00000344624		107	atG/atA																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138591	11138591	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	102	525	3	ENST00000344626.4:c.3347T>C	p.Phe1116Ser	p.F1116S	ENST00000344626	NM_003072.3	1116	tTt/tCt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515096	103515096	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	36	303	4	ENST00000355739.4:c.1597del	p.Val533CysfsTer57	p.V533Cfs*57	ENST00000355739	NM_000123.3	533	Gtg/tg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061250	38061250	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	548	548	7	ENST00000250448.2:c.739C>A	p.His247Asn	p.H247N	ENST00000250448	NM_004496.3	247	Cac/Aac																																																																														
INSR	0	MSKCC	GRCh37	19	7163209	7163209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	39	358	0	ENST00000302850.5:c.1863C>A	p.Asn621Lys	p.N621K	ENST00000302850	NM_000208.2	621	aaC/aaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	82	453	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	91	550	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	82	578	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057736	27057736	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	112	819	3	ENST00000324856.7:c.1444C>T	p.Gln482Ter	p.Q482*	ENST00000324856	NM_006015.4	482	Cag/Tag																																																																														
TBX3	0	MSKCC	GRCh37	12	115120941	115120941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	70	531	0	ENST00000257566.3:c.65C>T	p.Pro22Leu	p.P22L	ENST00000257566	NM_016569.3	22	cCt/cTt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482870	67482870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	82	326	0	ENST00000327367.4:c.1274C>A	p.Ser425Tyr	p.S425Y	ENST00000327367	NM_005902.3	425	tCt/tAt																																																																														
STAT5B	0	MSKCC	GRCh37	17	40375496	40375496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	96	577	0	ENST00000293328.3:c.454C>T	p.Arg152Ter	p.R152*	ENST00000293328	NM_012448.3	152	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604743	48604744	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	20	429	0	ENST00000342988.3:c.1567dup	p.Cys523LeufsTer4	p.C523Lfs*4	ENST00000342988	NM_005359.5	522	cct/ccTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	281	514	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	231	601	7	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	74	207	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	35	207	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
PAX5	0	MSKCC	GRCh37	9	37015010	37015010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	144	358	0	ENST00000358127.4:c.394G>A	p.Val132Ile	p.V132I	ENST00000358127	NM_001280556.1	132	Gtc/Atc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4117625	4117625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	110	529	0	ENST00000262948.5:c.95C>A	p.Ala32Glu	p.A32E	ENST00000262948	NM_030662.3	32	gCa/gAa																																																																														
IRS1	0	MSKCC	GRCh37	2	227660252	227660252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	49	556	0	ENST00000305123.5:c.3203G>T	p.Gly1068Val	p.G1068V	ENST00000305123	NM_005544.2	1068	gGc/gTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0030150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	134	324	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99482442	99482442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	105	373	0	ENST00000268035.6:c.3310C>G	p.Leu1104Val	p.L1104V	ENST00000268035	NM_000875.3	1104	Cta/Gta																																																																														
TP53	0	MSKCC	GRCh37	17	7579355	7579356	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0030150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	238	671	0	ENST00000269305.4:c.331_332del	p.Leu111GlyfsTer37	p.L111Gfs*37	ENST00000269305	NM_001126112.2	111	CTg/g																																																																														
DNMT1	0	MSKCC	GRCh37	19	10260152	10260152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	179	525	1	ENST00000340748.4:c.2515C>T	p.Pro839Ser	p.P839S	ENST00000340748		839	Ccc/Tcc																																																																														
APC	0	MSKCC	GRCh37	5	112175173	112175173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	153	238	0	ENST00000257430.4:c.3883del	p.Glu1295LysfsTer10	p.E1295Kfs*10	ENST00000257430	NM_000038.5	1294	caG/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	31	546	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156845416	156845416	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	49	704	1	ENST00000524377.1:c.1459C>T	p.Gln487Ter	p.Q487*	ENST00000524377	NM_002529.3	487	Caa/Taa																																																																														
HGF	0	MSKCC	GRCh37	7	81350107	81350107	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	71	379	0	ENST00000222390.5:c.1225G>T	p.Gly409Ter	p.G409*	ENST00000222390	NM_000601.4	409	Gga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	48934218	48934222	+	frameshift_variant	Frame_Shift_Del	DEL	TATTT	TATTT	-			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	14	516	0	ENST00000267163.4:c.677_681delTTATT	p.Phe226Ter	p.F226*	ENST00000267163	NM_000321.2	225	TATTTt/t																																																																														
RFWD2	0	MSKCC	GRCh37	1	176055009	176055009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	88	482	0	ENST00000367669.3:c.1044G>T	p.Trp348Cys	p.W348C	ENST00000367669	NM_022457.5	348	tgG/tgT																																																																														
INPPL1	0	MSKCC	GRCh37	11	71945324	71945324	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	44	635	0	ENST00000298229.2:c.2213-1G>T		p.X738_splice	ENST00000298229	NM_001567.3	738																																																																															
RB1	0	MSKCC	GRCh37	13	48954309	48954329	+	inframe_deletion	In_Frame_Del	DEL	TGAATGACAACATTTTTCATA	TGAATGACAACATTTTTCATA	-			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	50	312	0	ENST00000267163.4:c.1432_1452del	p.Asn478_Met484del	p.N478_M484del	ENST00000267163	NM_000321.2	477	cTGAATGACAACATTTTTCATAtg/ctg																																																																														
SLX4	0	MSKCC	GRCh37	16	3644462	3644462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	25	670	0	ENST00000294008.3:c.2152A>G	p.Ile718Val	p.I718V	ENST00000294008	NM_032444.2	718	Atc/Gtc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4097336	4097336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	44	520	0	ENST00000262948.5:c.925G>T	p.Gly309Trp	p.G309W	ENST00000262948	NM_030662.3	309	Ggg/Tgg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32187934	32187934	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	21	618	0	ENST00000375023.3:c.1287C>A	p.Cys429Ter	p.C429*	ENST00000375023	NM_004557.3	429	tgC/tgA																																																																														
TAP1	0	MSKCC	GRCh37	6	32821212	32821212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	36	727	0	ENST00000354258.4:c.382C>T	p.Leu128Phe	p.L128F	ENST00000354258	NM_000593.5	128	Ctc/Ttc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528707	8528707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	49	388	0	ENST00000356435.5:c.425C>A	p.Thr142Lys	p.T142K	ENST00000356435		142	aCg/aAg																																																																														
WT1	0	MSKCC	GRCh37	11	32417944	32417944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	34	448	0	ENST00000332351.3:c.1108C>A	p.Arg370Ser	p.R370S	ENST00000332351	NM_024426.4	370	Cgt/Agt																																																																														
CDK12	0	MSKCC	GRCh37	17	37667816	37667816	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	55	553	0	ENST00000447079.4:c.2701T>G	p.Tyr901Asp	p.Y901D	ENST00000447079	NM_015083.1	901	Tac/Gac																																																																														
CDK12	0	MSKCC	GRCh37	17	37650882	37650883	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0030162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	72	690	0	ENST00000447079.4:c.2356_2357del	p.Val786CysfsTer2	p.V786Cfs*2	ENST00000447079	NM_015083.1	785	aGT/a																																																																														
NCOA3	0	MSKCC	GRCh37	20	46265202	46265202	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	32	390	1	ENST00000371998.3:c.2072A>G	p.Asn691Ser	p.N691S	ENST00000371998		691	aAt/aGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	172	711	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88476310	88476310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	53	705	0	ENST00000360948.2:c.1822G>A	p.Gly608Ser	p.G608S	ENST00000360948	NM_001012338.2	608	Ggc/Agc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118307229	118307229	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0030164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	26	152	0	ENST00000534358.1:c.2T>C	p.Met1?	p.M1?	ENST00000534358	NM_005933.3	1	aTg/aCg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786176	3786176	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	68	639	0	ENST00000262367.5:c.4589G>C	p.Arg1530Thr	p.R1530T	ENST00000262367	NM_004380.2	1530	aGg/aCg																																																																														
BARD1	0	MSKCC	GRCh37	2	215617260	215617260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	32	395	0	ENST00000260947.4:c.1588C>T	p.Pro530Ser	p.P530S	ENST00000260947	NM_000465.2	530	Cct/Tct																																																																														
NCOR1	0	MSKCC	GRCh37	17	15961336	15961336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	104	449	0	ENST00000268712.3:c.6053G>A	p.Arg2018Gln	p.R2018Q	ENST00000268712	NM_006311.3	2018	cGa/cAa																																																																														
GATA3	0	MSKCC	GRCh37	10	8115947	8115965	+	frameshift_variant	Frame_Shift_Del	DEL	ACCACACCACCCCTCCAGC	ACCACACCACCCCTCCAGC	-			P-0030175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	56	308	0	ENST00000346208.3:c.1294_1312del	p.Pro432TrpfsTer37	p.P432Wfs*37	ENST00000346208		431	ggACCACACCACCCCTCCAGC/gg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111884617	111884617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	169	520	0	ENST00000341259.2:c.793C>G	p.Arg265Gly	p.R265G	ENST00000341259	NM_005475.2	265	Cgg/Ggg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936036	178936036	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	19	77	0	ENST00000263967.3:c.1578T>A	p.Asn526Lys	p.N526K	ENST00000263967	NM_006218.2	526	aaT/aaA																																																																														
SOX17	0	MSKCC	GRCh37	8	55372047	55372047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	218	358	0	ENST00000297316.4:c.737C>T	p.Pro246Leu	p.P246L	ENST00000297316	NM_022454.3	246	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	12	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	302	693	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt																																																																														
TSHR	0	MSKCC	GRCh37	14	81610227	81610227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	32	379	0	ENST00000298171.2:c.1825C>T	p.Arg609Ter	p.R609*	ENST00000298171	NM_000369.2	609	Cga/Tga																																																																														
ERF	0	MSKCC	GRCh37	19	42753567	42753567	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	190	700	0	ENST00000222329.4:c.697C>T	p.Arg233Ter	p.R233*	ENST00000222329	NM_006494.2	233	Cga/Tga																																																																														
DOT1L	0	MSKCC	GRCh37	19	2211834	2211834	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	27	569	0	ENST00000398665.3:c.1550A>T	p.Gln517Leu	p.Q517L	ENST00000398665	NM_032482.2	517	cAg/cTg																																																																														
TERT	0	MSKCC	GRCh37	5	1293485	1293485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	98	748	0	ENST00000310581.5:c.1516C>A	p.Gln506Lys	p.Q506K	ENST00000310581	NM_198253.2	506	Cag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	135	367	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123688	11123688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	174	538	0	ENST00000344626.4:c.2338G>A	p.Glu780Lys	p.E780K	ENST00000344626	NM_003072.3	780	Gag/Aag																																																																														
IGF1R	0	MSKCC	GRCh37	15	99500562	99500562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	147	474	0	ENST00000268035.6:c.3995G>T	p.Gly1332Val	p.G1332V	ENST00000268035	NM_000875.3	1332	gGg/gTg																																																																														
RAD51C	0	MSKCC	GRCh37	17	56774218	56774218	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	83	264	0	ENST00000337432.4:c.569A>G	p.Glu190Gly	p.E190G	ENST00000337432	NM_058216.2	190	gAg/gGg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610475	10610475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	194	507	0	ENST00000171111.5:c.235G>T	p.Val79Phe	p.V79F	ENST00000171111	NM_203500.1	79	Gtc/Ttc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223650	36223650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	238	736	0	ENST00000222270.7:c.6200G>T	p.Gly2067Val	p.G2067V	ENST00000222270	NM_014727.1	2067	gGc/gTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187510230	187510230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	134	426	0	ENST00000441802.2:c.13283G>T	p.Gly4428Val	p.G4428V	ENST00000441802	NM_005245.3	4428	gGc/gTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8319946	8319946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	65	236	0	ENST00000356435.5:c.5555G>T	p.Gly1852Val	p.G1852V	ENST00000356435		1852	gGa/gTa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521468	8521468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	156	461	0	ENST00000356435.5:c.770G>C	p.Cys257Ser	p.C257S	ENST00000356435		257	tGt/tCt																																																																														
RBM10	0	MSKCC	GRCh37	X	47028778	47028778	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	211	346	0	ENST00000329236.7:c.82G>T	p.Glu28Ter	p.E28*	ENST00000329236	NM_001204466.1	28	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0030189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	215	569	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
MET	0	MSKCC	GRCh37	7	116397714	116397714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	123	429	0	ENST00000397752.3:c.1988C>T	p.Ser663Leu	p.S663L	ENST00000397752	NM_000245.2	663	tCg/tTg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9784397	9784397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	187	517	0	ENST00000377346.4:c.2782G>A	p.Glu928Lys	p.E928K	ENST00000377346	NM_005026.3	928	Gag/Aag																																																																														
SRC	0	MSKCC	GRCh37	20	36022602	36022602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	300	520	1	ENST00000358208.4:c.475C>T	p.Arg159Trp	p.R159W	ENST00000358208		159	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175009	112175030	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	AGTGGTCAGCCTCAAAAGGCTG	AGTGGTCAGCCTCAAAAGGCTG	TGAGGCTGA			P-0030189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	40	217	1	ENST00000257430.4:c.3718_3739delinsTGAGGCTGA	p.Ser1240Ter	p.S1240*	ENST00000257430	NM_000038.5	1240	AGTGGTCAGCCTCAAAAGGCTGcc/TGAGGCTGAcc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	62	363	17	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	0	MSKCC	GRCh37	5	112175755	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	13	273	0	ENST00000257430.4:c.4464del	p.Leu1488PhefsTer19	p.L1488Ffs*19	ENST00000257430	NM_000038.5	1488	ttA/tt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0030191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	22	337	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	51	560	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																														
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	205	373	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
TET1	0	MSKCC	GRCh37	10	70332297	70332297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	30	422	0	ENST00000373644.4:c.202G>A	p.Val68Met	p.V68M	ENST00000373644	NM_030625.2	68	Gtg/Atg																																																																														
APC	0	MSKCC	GRCh37	5	112173600	112173600	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0030196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	97	343	0	ENST00000257430.4:c.2309C>G	p.Ser770Ter	p.S770*	ENST00000257430	NM_000038.5	770	tCa/tGa																																																																														
TCF3	0	MSKCC	GRCh37	19	1623981	1623981	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	196	499	0	ENST00000344749.5:c.518del	p.Val173AlafsTer111	p.V173Afs*111	ENST00000344749	NM_001136139.2	173	gTc/gc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0030202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	53	325	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444762	49444762	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	85	700	0	ENST00000301067.7:c.2704G>T	p.Glu902Ter	p.E902*	ENST00000301067	NM_003482.3	902	Gag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879016	151879016	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	97	463	0	ENST00000262189.6:c.5929del	p.Gln1977AsnfsTer13	p.Q1977Nfs*13	ENST00000262189	NM_170606.2	1977	Caa/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	78	339	0				ENST00000310581	NM_198253.2																																																																																
SF3B1	23451	MSKCC	GRCh37	2	198266713	198266713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776846119		P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	109	483	0	ENST00000335508.6:c.2219G>A	p.Gly740Glu	p.G740E	ENST00000335508	NM_012433.2	740	gGa/gAa																																																																														
GATA3	0	MSKCC	GRCh37	10	8100720	8100720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	86	621	1	ENST00000346208.3:c.694G>A	p.Gly232Arg	p.G232R	ENST00000346208		232	Gga/Aga																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401005	139401005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	105	577	0	ENST00000277541.6:c.3988C>T	p.Arg1330Cys	p.R1330C	ENST00000277541	NM_017617.3	1330	Cgc/Tgc																																																																														
NF1	0	MSKCC	GRCh37	17	29533256	29533256	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	39	249	0	ENST00000358273.4:c.1261-2A>T		p.X421_splice	ENST00000358273	NM_001042492.2	421																																																																															
MED12	0	MSKCC	GRCh37	X	70354255	70354255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	122	316	0	ENST00000374080.3:c.4666G>A	p.Glu1556Lys	p.E1556K	ENST00000374080		1556	Gag/Aag																																																																														
GREM1	0	MSKCC	GRCh37	15	33023123	33023123	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	95	404	2	ENST00000300177.4:c.232C>T	p.Gln78Ter	p.Q78*	ENST00000300177	NM_001191322.1	78	Caa/Taa																																																																														
NF1	0	MSKCC	GRCh37	17	29528166	29528166	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	107	542	0	ENST00000358273.4:c.1174C>T	p.Gln392Ter	p.Q392*	ENST00000358273	NM_001042492.2	392	Caa/Taa																																																																														
AGO2	0	MSKCC	GRCh37	8	141559213	141559213	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	74	456	0	ENST00000220592.5:c.1588G>A	p.Ala530Thr	p.A530T	ENST00000220592	NM_012154.3	530	Gcc/Acc																																																																														
FLT4	0	MSKCC	GRCh37	5	180055892	180055892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	78	474	1	ENST00000261937.6:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000261937	NM_182925.4	365	Gag/Aag																																																																														
SESN2	0	MSKCC	GRCh37	1	28599107	28599107	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	159	625	0	ENST00000253063.3:c.553G>T	p.Gly185Cys	p.G185C	ENST00000253063	NM_031459.4	185	Ggc/Tgc																																																																														
JUN	0	MSKCC	GRCh37	1	59248738	59248738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	138	627	0	ENST00000371222.2:c.5C>T	p.Thr2Ile	p.T2I	ENST00000371222	NM_002228.3	2	aCt/aTt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843712	156843712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	157	768	0	ENST00000524377.1:c.1138G>A	p.Asp380Asn	p.D380N	ENST00000524377	NM_002529.3	380	Gac/Aac																																																																														
POLE	0	MSKCC	GRCh37	12	133215785	133215786	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	97	566	1	ENST00000320574.5:c.5477_5478delinsAA	p.Arg1826Gln	p.R1826Q	ENST00000320574	NM_006231.2	1826	cGG/cAA																																																																														
DIS3	0	MSKCC	GRCh37	13	73337669	73337669	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	62	245	0	ENST00000377767.4:c.2047T>G	p.Ser683Ala	p.S683A	ENST00000377767	NM_014953.3	683	Tct/Gct																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993672	72993672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	114	497	0	ENST00000268489.5:c.373G>A	p.Asp125Asn	p.D125N	ENST00000268489	NM_006885.3	125	Gac/Aac																																																																														
NF1	0	MSKCC	GRCh37	17	29490319	29490320	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	66	397	0	ENST00000358273.4:c.404_405delinsAA	p.Arg135Gln	p.R135Q	ENST00000358273	NM_001042492.2	135	cGG/cAA																																																																														
ERBB2	0	MSKCC	GRCh37	17	37872667	37872667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	139	727	1	ENST00000269571.5:c.1627G>A	p.Glu543Lys	p.E543K	ENST00000269571		543	Gaa/Aaa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226823	2226823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	61	356	0	ENST00000398665.3:c.4303C>T	p.Pro1435Ser	p.P1435S	ENST00000398665	NM_032482.2	1435	Ccc/Tcc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097626	11097626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	149	713	0	ENST00000344626.4:c.806C>G	p.Pro269Arg	p.P269R	ENST00000344626	NM_003072.3	269	cCc/cGc																																																																														
SETD2	0	MSKCC	GRCh37	3	47125691	47125691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	112	360	0	ENST00000409792.3:c.5579C>T	p.Pro1860Leu	p.P1860L	ENST00000409792	NM_014159.6	1860	cCt/cTt																																																																														
MST1R	0	MSKCC	GRCh37	3	49939931	49939931	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	102	632	0	ENST00000296474.3:c.1112T>C	p.Ile371Thr	p.I371T	ENST00000296474	NM_002447.2	371	aTt/aCt																																																																														
TP63	0	MSKCC	GRCh37	3	189587169	189587169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	158	423	0	ENST00000264731.3:c.1186C>T	p.Pro396Ser	p.P396S	ENST00000264731	NM_003722.4	396	Cca/Tca																																																																														
TP63	0	MSKCC	GRCh37	3	189612161	189612161	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	134	456	0	ENST00000264731.3:c.1913T>G	p.Val638Gly	p.V638G	ENST00000264731	NM_003722.4	638	gTt/gGt																																																																														
EIF4E	0	MSKCC	GRCh37	4	99802237	99802237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	32	138	0	ENST00000280892.6:c.656C>T	p.Ser219Phe	p.S219F	ENST00000280892	NM_001130678.1	219	tCc/tTc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149499042	149499042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	124	460	0	ENST00000261799.4:c.2786C>T	p.Ala929Val	p.A929V	ENST00000261799	NM_002609.3	929	gCc/gTc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149510223	149510223	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	113	466	0	ENST00000261799.4:c.1246C>T	p.Pro416Ser	p.P416S	ENST00000261799	NM_002609.3	416	Cct/Tct																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527925	157527925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	105	502	0	ENST00000346085.5:c.5650C>T	p.Arg1884Trp	p.R1884W	ENST00000346085	NM_020732.3	1884	Cgg/Tgg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8492939	8492939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	79	489	0	ENST00000356435.5:c.2390C>T	p.Ser797Phe	p.S797F	ENST00000356435		797	tCc/tTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8504279	8504279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	76	394	1	ENST00000356435.5:c.1804G>A	p.Ala602Thr	p.A602T	ENST00000356435		602	Gct/Act																																																																														
ATRX	0	MSKCC	GRCh37	X	76889188	76889188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	87	265	0	ENST00000373344.5:c.4822C>T	p.Leu1608Phe	p.L1608F	ENST00000373344	NM_000489.3	1608	Ctt/Ttt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	60	430	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166214	118166214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	42	403	3	ENST00000369448.3:c.724G>A	p.Gly242Arg	p.G242R	ENST00000369448	NM_017709.3	242	Ggg/Agg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829549	72829549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	76	626	1	ENST00000268489.5:c.7032C>G	p.Ile2344Met	p.I2344M	ENST00000268489	NM_006885.3	2344	atC/atG																																																																														
PRDM14	0	MSKCC	GRCh37	8	70970993	70970993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	79	755	5	ENST00000276594.2:c.1268C>T	p.Pro423Leu	p.P423L	ENST00000276594	NM_024504.3	423	cCc/cTc																																																																														
LATS2	0	MSKCC	GRCh37	13	21563036	21563036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	85	803	3	ENST00000382592.4:c.883G>T	p.Gly295Ter	p.G295*	ENST00000382592	NM_014572.2	295	Gga/Tga																																																																														
IDH2	0	MSKCC	GRCh37	15	90628550	90628550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	67	744	5	ENST00000330062.3:c.1037C>T	p.Ala346Val	p.A346V	ENST00000330062	NM_002168.2	346	gCc/gTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578416	7578418	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0030211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	85	672	4	ENST00000269305.4:c.512_514del	p.Glu171del	p.E171del	ENST00000269305	NM_001126112.2	171	gAGGtt/gtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	121	338	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	200	427	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41219635	41219637	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0030213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	102	342	0	ENST00000357654.3:c.5062_5064del	p.Val1688del	p.V1688del	ENST00000357654	NM_007294.3	1688	GTT/-																																																																														
JAK3	0	MSKCC	GRCh37	19	17955121	17955121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	232	491	1	ENST00000458235.1:c.106G>A	p.Gly36Arg	p.G36R	ENST00000458235	NM_000215.3	36	Ggg/Agg																																																																														
STK19	0	MSKCC	GRCh37	6	31940181	31940181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1390	275	519	1	ENST00000375331.2:c.323C>T	p.Ser108Phe	p.S108F	ENST00000375331	NM_004197.1	108	tCc/tTc																																																																														
PREX2	0	MSKCC	GRCh37	8	69020386	69020386	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	149	392	0	ENST00000288368.4:c.2758C>T	p.Gln920Ter	p.Q920*	ENST00000288368	NM_024870.2	920	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	40	404	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591798	48591798	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	34	309	0	ENST00000342988.3:c.961G>T	p.Glu321Ter	p.E321*	ENST00000342988	NM_005359.5	321	Gag/Tag																																																																														
RRAS2	0	MSKCC	GRCh37	11	14303251	14303253	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0030218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	66	579	0	ENST00000256196.4:c.422_424del	p.Glu141del	p.E141del	ENST00000256196		141	gAAGga/gga																																																																														
APC	0	MSKCC	GRCh37	5	112176146	112176146	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	40	397	0	ENST00000257430.4:c.4856del	p.Pro1619HisfsTer31	p.P1619Hfs*31	ENST00000257430	NM_000038.5	1619	Cca/ca																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	78	286	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	113	478	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	118	456	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	75	336	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	30	179	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TSC2	0	MSKCC	GRCh37	16	2120572	2120572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	325	517	0	ENST00000219476.3:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000219476	NM_000548.3	611	cGg/cAg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710600	114710600	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	95	372	0	ENST00000543371.1:c.85G>T	p.Glu29Ter	p.E29*	ENST00000543371	NM_001198531.1	29	Gag/Tag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509046	106509046	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	36	375	1	ENST00000359195.3:c.1040A>G	p.Glu347Gly	p.E347G	ENST00000359195	NM_002649.2	347	gAg/gGg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	64	369	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	74	408	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	175	535	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	55	242	0	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	55	242	0	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg																																																																														
RBM10	0	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	81	611	1	ENST00000329236.7:c.201+1688T>G		p.*67*	ENST00000329236	NM_001204466.1	67																																																																															
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	49	402	0	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50459531	50459531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	64	282	0	ENST00000331340.3:c.820C>T	p.Arg274Cys	p.R274C	ENST00000331340	NM_006060.4	274	Cgt/Tgt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223131	5223131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	113	591	1	ENST00000357368.4:c.2672C>T	p.Thr891Met	p.T891M	ENST00000357368	NM_002850.3	891	aCg/aTg																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	134	527	7	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
AR	0	MSKCC	GRCh37	X	66765159	66765194	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	16	234	0	ENST00000374690.3:c.204_239del	p.Gln69_Gln80del	p.Q69_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																														
CIC	0	MSKCC	GRCh37	19	42795187	42795187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	60	638	0	ENST00000575354.2:c.2267C>T	p.Ala756Val	p.A756V	ENST00000575354	NM_015125.3	756	gCg/gTg																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	109	455	0	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
PAX5	0	MSKCC	GRCh37	9	36966593	36966593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	79	436	0	ENST00000358127.4:c.733C>T	p.His245Tyr	p.H245Y	ENST00000358127	NM_001280556.1	245	Cac/Tac																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	117	426	0	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																														
ERBB4	0	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	T	T	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	61	325	0	ENST00000342788.4:c.1delA	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	149	507	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166202	118166202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	68	378	0	ENST00000369448.3:c.712G>A	p.Glu238Lys	p.E238K	ENST00000369448	NM_017709.3	238	Gaa/Aaa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120465301	120465301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	62	363	0	ENST00000256646.2:c.4960G>A	p.Ala1654Thr	p.A1654T	ENST00000256646	NM_024408.3	1654	Gcc/Acc																																																																														
U2AF1	0	MSKCC	GRCh37	21	44514870	44514870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	57	349	0	ENST00000291552.4:c.377C>T	p.Ala126Val	p.A126V	ENST00000291552	NM_006758.2	126	gCt/gTt																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971139	21971139	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	51	290	1	ENST00000361570.3:c.385C>T	p.Arg129Ter	p.R129*	ENST00000361570	NM_058195.3	129	Cga/Tga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67576486	67576487	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	68	393	0	ENST00000274335.5:c.770dup	p.Asn257LysfsTer10	p.N257Kfs*10	ENST00000274335		255	-/A																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	80	515	1	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs768101780		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	121	533	1	ENST00000543371.1:c.1485del	p.Ser496ProfsTer5	p.S496Pfs*5	ENST00000543371	NM_001198531.1	494	Ccc/cc																																																																														
SESN3	0	MSKCC	GRCh37	11	94911005	94911007	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	109	580	0	ENST00000536441.1:c.1123_1125del	p.Leu375del	p.L375del	ENST00000536441	NM_144665.3	375	CTT/-																																																																														
POLE	0	MSKCC	GRCh37	12	133240657	133240657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	90	482	1	ENST00000320574.5:c.2639C>T	p.Thr880Met	p.T880M	ENST00000320574	NM_006231.2	880	aCg/aTg																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324463	31324463	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	85	407	0	ENST00000412585.2:c.343+2T>C		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																															
FGF3	0	MSKCC	GRCh37	11	69633565	69633565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	71	170	0	ENST00000334134.2:c.137G>A	p.Arg46His	p.R46H	ENST00000334134	NM_005247.2	46	cGc/cAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858037	9858037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	63	472	0	ENST00000330684.3:c.3364G>A	p.Gly1122Ser	p.G1122S	ENST00000330684	NM_001134407.1	1122	Ggt/Agt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821673	72821673	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	43	177	0	ENST00000268489.5:c.10502T>C	p.Val3501Ala	p.V3501A	ENST00000268489	NM_006885.3	3501	gTg/gCg																																																																														
UPF1	0	MSKCC	GRCh37	19	18976166	18976166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	112	563	0	ENST00000262803.5:c.2926G>A	p.Val976Met	p.V976M	ENST00000262803	NM_002911.3	976	Gtg/Atg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119717	70119717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	96	600	2	ENST00000245479.2:c.723del	p.Thr243ProfsTer10	p.T243Pfs*10	ENST00000245479	NM_000346.3	240	aCc/ac																																																																														
ETV6	0	MSKCC	GRCh37	12	12038935	12038935	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	73	359	0	ENST00000396373.4:c.1228G>T	p.Glu410Ter	p.E410*	ENST00000396373	NM_001987.4	410	Gag/Tag																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986774	36986774	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	23	62	0	ENST00000354822.5:c.915del	p.Ala306ArgfsTer75	p.A306Rfs*75	ENST00000354822	NM_001079668.2	305	ccC/cc																																																																														
RECQL	0	MSKCC	GRCh37	12	21630862	21630862	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202110155		P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	57	515	0	ENST00000421138.2:c.742G>A	p.Ala248Thr	p.A248T	ENST00000421138		248	Gca/Aca																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664720	138664720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	23	165	0	ENST00000330315.3:c.845C>T	p.Ala282Val	p.A282V	ENST00000330315	NM_023067.3	282	gCc/gTc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9775780	9775780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	91	584	0	ENST00000377346.4:c.323G>A	p.Arg108His	p.R108H	ENST00000377346	NM_005026.3	108	cGc/cAc																																																																														
STK40	0	MSKCC	GRCh37	1	36809860	36809860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	84	454	0	ENST00000373129.3:c.745C>T	p.Pro249Ser	p.P249S	ENST00000373129	NM_032017.1	249	Ccg/Tcg																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612752	228612752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	105	510	0	ENST00000366696.1:c.275C>T	p.Ala92Val	p.A92V	ENST00000366696	NM_003493.2	92	gCg/gTg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114901046	114901046	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	78	391	0	ENST00000543371.1:c.656A>G	p.His219Arg	p.H219R	ENST00000543371	NM_001198531.1	219	cAc/cGc																																																																														
RAD52	0	MSKCC	GRCh37	12	1023179	1023179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	86	447	1	ENST00000358495.3:c.1076C>T	p.Ala359Val	p.A359V	ENST00000358495	NM_134424.2	359	gCc/gTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435113	49435113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	38	466	0	ENST00000301067.7:c.6440C>T	p.Ala2147Val	p.A2147V	ENST00000301067	NM_003482.3	2147	gCg/gTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435993	110435993	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	128	656	0	ENST00000375856.3:c.2408A>G	p.Tyr803Cys	p.Y803C	ENST00000375856	NM_003749.2	803	tAc/tGc																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988193	36988193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	52	341	0	ENST00000354822.5:c.460G>A	p.Ala154Thr	p.A154T	ENST00000354822	NM_001079668.2	154	Gcc/Acc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88483977	88483977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	61	324	1	ENST00000360948.2:c.1593G>T	p.Gln531His	p.Q531H	ENST00000360948	NM_001012338.2	531	caG/caT																																																																														
NTRK3	0	MSKCC	GRCh37	15	88799380	88799380	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	37	244	0	ENST00000360948.2:c.5A>G	p.Asp2Gly	p.D2G	ENST00000360948	NM_001012338.2	2	gAt/gGt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99452071	99452071	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	28	372	0	ENST00000268035.6:c.1405A>G	p.Lys469Glu	p.K469E	ENST00000268035	NM_000875.3	469	Aaa/Gaa																																																																														
PALB2	0	MSKCC	GRCh37	16	23632773	23632773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	37	436	0	ENST00000261584.4:c.3023C>A	p.Pro1008His	p.P1008H	ENST00000261584	NM_024675.3	1008	cCc/cAc																																																																														
STAT5A	0	MSKCC	GRCh37	17	40456407	40456407	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	104	506	0	ENST00000345506.4:c.1217A>G	p.His406Arg	p.H406R	ENST00000345506	NM_003152.3	406	cAc/cGc																																																																														
TCF3	0	MSKCC	GRCh37	19	1621884	1621884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	81	582	1	ENST00000344749.5:c.908G>A	p.Gly303Asp	p.G303D	ENST00000344749	NM_001136139.2	303	gGc/gAc																																																																														
CD79A	0	MSKCC	GRCh37	19	42383241	42383242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	101	560	0	ENST00000221972.3:c.263dup	p.Asn88LysfsTer94	p.N88Kfs*94	ENST00000221972	NM_021601.3	87	-/A																																																																														
POLD1	0	MSKCC	GRCh37	19	50918792	50918792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	186	610	0	ENST00000440232.2:c.2662A>G	p.Thr888Ala	p.T888A	ENST00000440232	NM_002691.3	888	Acc/Gcc																																																																														
POLD1	0	MSKCC	GRCh37	19	50919885	50919885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	164	544	0	ENST00000440232.2:c.2972G>A	p.Cys991Tyr	p.C991Y	ENST00000440232	NM_002691.3	991	tGc/tAc																																																																														
SOS1	0	MSKCC	GRCh37	2	39347478	39347478	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	55	255	0	ENST00000402219.2:c.86del	p.Lys29ArgfsTer23	p.K29Rfs*23	ENST00000402219	NM_005633.3	29	aAg/ag																																																																														
MSH2	0	MSKCC	GRCh37	2	47630454	47630454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	87	577	0	ENST00000233146.2:c.124T>C	p.Phe42Leu	p.F42L	ENST00000233146	NM_000251.2	42	Ttc/Ctc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121317	29121317	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	47	528	1	ENST00000328354.6:c.358del	p.Ser120AlafsTer11	p.S120Afs*11	ENST00000328354	NM_007194.3	120	Agc/gc																																																																														
EP300	0	MSKCC	GRCh37	22	41573722	41573722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	101	574	1	ENST00000263253.7:c.6007C>T	p.Pro2003Ser	p.P2003S	ENST00000263253	NM_001429.3	2003	Ccc/Tcc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713915	30713915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	78	356	0	ENST00000359013.4:c.1315G>A	p.Ala439Thr	p.A439T	ENST00000359013	NM_001024847.2	439	Gct/Act																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952087	178952087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	82	342	0	ENST00000263967.3:c.3142C>T	p.His1048Tyr	p.H1048Y	ENST00000263967	NM_006218.2	1048	Cat/Tat																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139799	55139799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	63	436	0	ENST00000257290.5:c.1460G>A	p.Arg487His	p.R487H	ENST00000257290	NM_006206.4	487	cGt/cAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187539619	187539619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	59	280	0	ENST00000441802.2:c.8121C>A	p.Phe2707Leu	p.F2707L	ENST00000441802	NM_005245.3	2707	ttC/ttA																																																																														
TERT	0	MSKCC	GRCh37	5	1264630	1264630	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	90	558	0	ENST00000310581.5:c.2732A>G	p.Asp911Gly	p.D911G	ENST00000310581	NM_198253.2	911	gAc/gGc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176518089	176518089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	89	512	0	ENST00000292408.4:c.587G>A	p.Arg196His	p.R196H	ENST00000292408	NM_213647.1	196	cGc/cAc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528666	157528666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	80	530	0	ENST00000346085.5:c.6391T>C	p.Ser2131Pro	p.S2131P	ENST00000346085	NM_020732.3	2131	Tcc/Ccc																																																																														
MET	0	MSKCC	GRCh37	7	116418998	116418998	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	42	216	0	ENST00000397752.3:c.3509del	p.Arg1170GlnfsTer9	p.R1170Qfs*9	ENST00000397752	NM_000245.2	1170	cGa/ca																																																																														
SOX17	0	MSKCC	GRCh37	8	55372062	55372062	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	62	335	0	ENST00000297316.4:c.752A>G	p.Tyr251Cys	p.Y251C	ENST00000297316	NM_022454.3	251	tAc/tGc																																																																														
NBN	0	MSKCC	GRCh37	8	90982704	90982704	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	84	279	0	ENST00000265433.3:c.784T>C	p.Phe262Leu	p.F262L	ENST00000265433	NM_002485.4	262	Ttc/Ctc																																																																														
JAK2	0	MSKCC	GRCh37	9	5055691	5055691	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	72	270	0	ENST00000381652.3:c.959T>C	p.Phe320Ser	p.F320S	ENST00000381652	NM_004972.3	320	tTt/tCt																																																																														
JAK2	0	MSKCC	GRCh37	9	5080345	5080345	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	24	251	0	ENST00000381652.3:c.2248G>T	p.Gly750Ter	p.G750*	ENST00000381652	NM_004972.3	750	Gga/Tga																																																																														
GNAQ	0	MSKCC	GRCh37	9	80412517	80412517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	76	271	0	ENST00000286548.4:c.524C>T	p.Thr175Met	p.T175M	ENST00000286548	NM_002072.3	175	aCg/aTg																																																																														
TP63	0	MSKCC	GRCh37	3	189612190	189612190	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	203	530	0	ENST00000264731.3:c.1942C>T	p.Gln648Ter	p.Q648*	ENST00000264731	NM_003722.4	648	Cag/Tag																																																																														
TET2	0	MSKCC	GRCh37	4	106156863	106156863	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0030245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	184	526	0	ENST00000380013.4:c.1765del	p.Ile589PhefsTer12	p.I589Ffs*12	ENST00000380013	NM_001127208.2	588	tcA/tc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0030248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	133	283	0				ENST00000310581	NM_198253.2																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0030248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	72	336	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0030248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	198	461	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50479322	50479322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	130	259	0	ENST00000394963.4:c.170C>T	p.Ala57Val	p.A57V	ENST00000394963	NM_003076.4	57	gCc/gTc																																																																														
TCF3	0	MSKCC	GRCh37	19	1615815	1615815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	171	323	0	ENST00000344749.5:c.1456G>A	p.Gly486Arg	p.G486R	ENST00000344749	NM_001136139.2	486	Ggg/Agg																																																																														
BRD4	0	MSKCC	GRCh37	19	15376338	15376338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	288	690	0	ENST00000263377.2:c.676C>T	p.Pro226Ser	p.P226S	ENST00000263377	NM_058243.2	226	Cct/Tct																																																																														
BAP1	0	MSKCC	GRCh37	3	52443884	52443884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	208	426	0	ENST00000460680.1:c.11del	p.Gly4AlafsTer68	p.G4Afs*68	ENST00000460680	NM_004656.3	4	gGc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	207	401	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120465262	120465262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17024517		P-0030258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	90	232	0	ENST00000256646.2:c.4999G>A	p.Val1667Ile	p.V1667I	ENST00000256646	NM_024408.3	1667	Gtc/Atc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99440093	99440093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	81	355	0	ENST00000268035.6:c.1061C>T	p.Thr354Ile	p.T354I	ENST00000268035	NM_000875.3	354	aCc/aTc																																																																														
CSDE1	0	MSKCC	GRCh37	1	115280598	115280598	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	56	397	0	ENST00000438362.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000438362	NM_001242891.1	145	Cga/Tga																																																																														
FH	0	MSKCC	GRCh37	1	241683005	241683011	+	frameshift_variant	Frame_Shift_Del	DEL	CCGAAGT	CCGAAGT	-			P-0030258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	63	329	0	ENST00000366560.3:c.12_18del	p.Leu5SerfsTer16	p.L5Sfs*16	ENST00000366560	NM_000143.3	4	gcACTTCGG/gc																																																																														
TSC2	0	MSKCC	GRCh37	16	2098654	2098656	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0030258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	96	376	0	ENST00000219476.3:c.40_42del	p.Lys14del	p.K14del	ENST00000219476	NM_000548.3	13	gAGAag/gag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878802	151878802	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	160	403	0	ENST00000262189.6:c.6143A>T	p.Gln2048Leu	p.Q2048L	ENST00000262189	NM_170606.2	2048	cAa/cTa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	23	167	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	52	325	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	58	388	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	38	236	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
RFWD2	0	MSKCC	GRCh37	1	175958497	175958497	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	55	284	1	ENST00000367669.3:c.1847+1G>A		p.X616_splice	ENST00000367669	NM_022457.5	616																																																																															
APC	0	MSKCC	GRCh37	5	112173512	112173513	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	33	231	0	ENST00000257430.4:c.2224_2225dup	p.Met743LeufsTer19	p.M743Lfs*19	ENST00000257430	NM_000038.5	741	aat/aATat																																																																														
FLT3	0	MSKCC	GRCh37	13	28608219	28608219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	35	392	0	ENST00000241453.7:c.1837G>T	p.Gly613Trp	p.G613W	ENST00000241453	NM_004119.2	613	Ggg/Tgg																																																																														
B2M	0	MSKCC	GRCh37	15	45007624	45007624	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TAT			P-0030259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	32	178	0	ENST00000558401.1:c.71delinsTAT	p.Thr24IlefsTer21	p.T24Ifs*21	ENST00000558401	NM_004048.2	24	aCt/aTATt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	20	531	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0030262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	229	485	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	154	338	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0030262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	56	192	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0030262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	56	192	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9927977	9927977	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	43	269	0	ENST00000330684.3:c.1762T>G	p.Leu588Val	p.L588V	ENST00000330684	NM_001134407.1	588	Tta/Gta																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794923	242794923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	72	573	1	ENST00000334409.5:c.286C>T	p.Arg96Cys	p.R96C	ENST00000334409	NM_005018.2	96	Cgt/Tgt																																																																														
TAP2	0	MSKCC	GRCh37	6	32797216	32797216	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	98	498	0	ENST00000374899.4:c.1893T>A	p.Asp631Glu	p.D631E	ENST00000374899	NM_018833.2	631	gaT/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	230	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ATR	0	MSKCC	GRCh37	3	142261554	142261555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	257	425	2	ENST00000350721.4:c.3402dupT	p.Asn1135Ter	p.N1135*	ENST00000350721	NM_001184.3	1134	-/T																																																																														
TP53	0	MSKCC	GRCh37	17	7578418	7578418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	127	589	0	ENST00000269305.4:c.512A>G	p.Glu171Gly	p.E171G	ENST00000269305	NM_001126112.2	171	gAg/gGg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38148175	38148175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	357	315	0	ENST00000317025.8:c.2936G>A	p.Cys979Tyr	p.C979Y	ENST00000317025	NM_023034.1	979	tGc/tAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	33	306	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	57	251	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	48	219	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	46	241	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943631	9943631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	63	331	0	ENST00000330684.3:c.1310G>A	p.Arg437Gln	p.R437Q	ENST00000330684	NM_001134407.1	437	cGg/cAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575077	48575077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	48	243	0	ENST00000342988.3:c.271C>A	p.Pro91Thr	p.P91T	ENST00000342988	NM_005359.5	91	Cct/Act																																																																														
SMYD3	0	MSKCC	GRCh37	1	246091255	246091255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	73	282	0	ENST00000388985.4:c.680G>T	p.Arg227Leu	p.R227L	ENST00000388985		227	cGa/cTa																																																																														
PTEN	0	MSKCC	GRCh37	10	89624275	89624276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	79	237	0	ENST00000371953.3:c.51dup	p.Glu18ArgfsTer26	p.E18Rfs*26	ENST00000371953	NM_000314.4	17	caa/cAaa																																																																														
MGA	0	MSKCC	GRCh37	15	42042757	42042757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	26	289	0	ENST00000219905.7:c.6952G>T	p.Glu2318Ter	p.E2318*	ENST00000219905	NM_001164273.1	2318	Gaa/Taa																																																																														
RPTOR	0	MSKCC	GRCh37	17	78831653	78831653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	63	333	0	ENST00000306801.3:c.1462C>T	p.Arg488Trp	p.R488W	ENST00000306801	NM_020761.2	488	Cgg/Tgg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45374844	45374844	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0030269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	55	278	0	ENST00000262160.6:c.997+2T>C		p.X333_splice	ENST00000262160	NM_005901.5	333																																																																															
DDR2	0	MSKCC	GRCh37	1	162748450	162748451	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAT			P-0029892-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			395	63	397	0	ENST00000367921.3:c.2366_2368dup	p.Tyr789dup	p.Y789dup	ENST00000367921	NM_006182.2	789	-/TAT																																																																														
ELF3	0	MSKCC	GRCh37	1	201982979	201982979	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029892-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			588	112	714	0	ENST00000359651.3:c.828G>A	p.Trp276Ter	p.W276*	ENST00000359651		276	tgG/tgA																																																																														
RET	0	MSKCC	GRCh37	10	43606749	43606749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029892-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			443	29	653	0	ENST00000355710.3:c.1358G>A	p.Gly453Glu	p.G453E	ENST00000355710	NM_020975.4	453	gGg/gAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425371	49425371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029892-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			496	63	770	0	ENST00000301067.7:c.13117G>T	p.Gly4373Cys	p.G4373C	ENST00000301067	NM_003482.3	4373	Ggt/Tgt																																																																														
POLD1	0	MSKCC	GRCh37	19	50917057	50917057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029892-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			409	52	713	0	ENST00000440232.2:c.2309A>G	p.Glu770Gly	p.E770G	ENST00000440232	NM_002691.3	770	gAg/gGg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32166915	32166917	+	missense_variant	Missense_Mutation	ONP	AGG	AGG	CAT			P-0029892-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			451	56	803	1	ENST00000375023.3:c.4321_4323delinsATG	p.Pro1441Met	p.P1441M	ENST00000375023	NM_004557.3	1441	CCT/ATG																																																																														
FYN	0	MSKCC	GRCh37	6	111982971	111982971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029892-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			451	41	561	0	ENST00000368678.4:c.1576C>G	p.Pro526Ala	p.P526A	ENST00000368678		526	Ccc/Gcc																																																																														
CD274	0	MSKCC	GRCh37	9	5462959	5462959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029892-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			189	37	389	0	ENST00000381577.3:c.520G>A	p.Val174Ile	p.V174I	ENST00000381577	NM_014143.3	174	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	488	474	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	83	193	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64132833	64132833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	483	539	0	ENST00000334205.4:c.967C>T	p.Arg323Cys	p.R323C	ENST00000334205	NM_003942.2	323	Cgc/Tgc																																																																														
MTOR	0	MSKCC	GRCh37	1	11190744	11190744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148876562		P-0029965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	50	522	0	ENST00000361445.4:c.5455C>T	p.His1819Tyr	p.H1819Y	ENST00000361445	NM_004958.3	1819	Cat/Tat																																																																														
APC	0	MSKCC	GRCh37	5	112174620	112174620	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	99	346	0	ENST00000257430.4:c.3329C>G	p.Ser1110Ter	p.S1110*	ENST00000257430	NM_000038.5	1110	tCa/tGa																																																																														
PREX2	0	MSKCC	GRCh37	8	68995526	68995526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	384	507	0	ENST00000288368.4:c.1930G>T	p.Val644Phe	p.V644F	ENST00000288368	NM_024870.2	644	Gtt/Ttt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			194	124	345	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	582	465	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ROS1	0	MSKCC	GRCh37	6	117708999	117708999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34203286		P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	161	393	0	ENST00000368508.3:c.1958C>T	p.Ser653Phe	p.S653F	ENST00000368508	NM_002944.2	653	tCt/tTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			65	185	402	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			65	185	402	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538897	23538897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150251660		P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	192	399	1	ENST00000380871.4:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000380871	NM_006167.3	181	cGa/cAa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11134255	11134255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	209	483	0	ENST00000344626.4:c.2921C>T	p.Pro974Leu	p.P974L	ENST00000344626	NM_003072.3	974	cCc/cTc																																																																														
TEK	0	MSKCC	GRCh37	9	27169552	27169552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	250	489	1	ENST00000380036.4:c.553G>A	p.Asp185Asn	p.D185N	ENST00000380036	NM_000459.3	185	Gat/Aat																																																																														
ELF3	0	MSKCC	GRCh37	1	201980355	201980355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	244	618	1	ENST00000359651.3:c.91C>T	p.Pro31Ser	p.P31S	ENST00000359651		31	Cct/Tct																																																																														
KMT2A	0	MSKCC	GRCh37	11	118359404	118359404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	192	288	0	ENST00000534358.1:c.4408C>T	p.Gln1470Ter	p.Q1470*	ENST00000534358	NM_005933.3	1470	Cag/Tag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18699332	18699332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	81	330	0	ENST00000266497.5:c.3433G>T	p.Asp1145Tyr	p.D1145Y	ENST00000266497		1145	Gac/Tac																																																																														
RB1	0	MSKCC	GRCh37	13	49054143	49054143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	82	263	0	ENST00000267163.4:c.2723G>A	p.Arg908Gln	p.R908Q	ENST00000267163	NM_000321.2	908	cGa/cAa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5258075	5258075	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			886	208	414	1	ENST00000357368.4:c.659A>G	p.Asn220Ser	p.N220S	ENST00000357368	NM_002850.3	220	aAc/aGc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223418	36223418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	608	713	1	ENST00000222270.7:c.5968G>A	p.Asp1990Asn	p.D1990N	ENST00000222270	NM_014727.1	1990	Gac/Aac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224559	36224559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	652	764	0	ENST00000222270.7:c.7021G>T	p.Gly2341Trp	p.G2341W	ENST00000222270	NM_014727.1	2341	Ggg/Tgg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45858010	45858010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	916	543	0	ENST00000391945.4:c.1643C>T	p.Thr548Ile	p.T548I	ENST00000391945	NM_000400.3	548	aCc/aTc																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111881389	111881389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	185	385	0	ENST00000393256.3:c.67G>A	p.Glu23Lys	p.E23K	ENST00000393256	NM_006538.4	23	Gag/Aag																																																																														
BCL2L1	0	MSKCC	GRCh37	20	30309925	30309925	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	165	404	0	ENST00000307677.4:c.97A>T	p.Asn33Tyr	p.N33Y	ENST00000307677	NM_138578.1	33	Aac/Tac																																																																														
MST1R	0	MSKCC	GRCh37	3	49932690	49932690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	311	597	0	ENST00000296474.3:c.3181G>A	p.Asp1061Asn	p.D1061N	ENST00000296474	NM_002447.2	1061	Gac/Aac																																																																														
EPHA3	0	MSKCC	GRCh37	3	89498473	89498473	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	100	259	0	ENST00000336596.2:c.2445G>A	p.Trp815Ter	p.W815*	ENST00000336596	NM_005233.5	815	tgG/tgA																																																																														
BCL6	0	MSKCC	GRCh37	3	187446330	187446330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			185	143	367	0	ENST00000232014.4:c.1358C>T	p.Ser453Phe	p.S453F	ENST00000232014	NM_001130845.1	453	tCc/tTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187541690	187541690	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			151	138	310	0	ENST00000441802.2:c.6050T>A	p.Leu2017His	p.L2017H	ENST00000441802	NM_005245.3	2017	cTc/cAc																																																																														
IL7R	0	MSKCC	GRCh37	5	35876497	35876497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	190	451	0	ENST00000303115.3:c.1289C>T	p.Pro430Leu	p.P430L	ENST00000303115	NM_002185.3	430	cCa/cTa																																																																														
FLT4	0	MSKCC	GRCh37	5	180048898	180048898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	230	596	1	ENST00000261937.6:c.1664C>T	p.Pro555Leu	p.P555L	ENST00000261937	NM_182925.4	555	cCc/cTc																																																																														
MDC1	0	MSKCC	GRCh37	6	30671853	30671853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	273	563	0	ENST00000376406.3:c.5107C>T	p.Pro1703Ser	p.P1703S	ENST00000376406	NM_014641.2	1703	Cct/Tct																																																																														
SOX17	0	MSKCC	GRCh37	8	55372151	55372151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			233	193	415	0	ENST00000297316.4:c.841C>T	p.Pro281Ser	p.P281S	ENST00000297316	NM_022454.3	281	Ccc/Tcc																																																																														
JAK2	0	MSKCC	GRCh37	9	5022040	5022040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	115	420	0	ENST00000381652.3:c.53C>T	p.Ser18Phe	p.S18F	ENST00000381652	NM_004972.3	18	tCt/tTt																																																																														
ARAF	0	MSKCC	GRCh37	X	47430405	47430406	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	179	408	1	ENST00000377045.4:c.1680_1681delinsTT	p.Pro561Ser	p.P561S	ENST00000377045	NM_001654.4	560	ttCCcc/ttTTcc																																																																														
EZH2	0	MSKCC	GRCh37	7	148504797	148504797	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0021526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			220	137	319	0	ENST00000320356.2:c.2197T>C	p.Tyr733His	p.Y733H	ENST00000320356	NM_004456.4	733	Tac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	128	276	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402543	139402543	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200871631		P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	86	458	0	ENST00000277541.6:c.3374C>T	p.Ala1125Val	p.A1125V	ENST00000277541	NM_017617.3	1125	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	214	541	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
APC	0	MSKCC	GRCh37	5	112170683	112170683	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	122	288	0	ENST00000257430.4:c.1779G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tgG/tgA																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64129416	64129417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGATTGAGAC			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	94	496	0	ENST00000334205.4:c.855_856insAGACGCGATTG	p.Gly286ArgfsTer93	p.G286Rfs*93	ENST00000334205	NM_003942.2	283	aag/aaGCGATTGAGACg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64129460	64129460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	111	489	0	ENST00000334205.4:c.892C>A	p.His298Asn	p.H298N	ENST00000334205	NM_003942.2	298	Cat/Aat																																																																														
NTRK3	0	MSKCC	GRCh37	15	88428944	88428944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	35	128	0	ENST00000360948.2:c.2156A>G	p.Asp719Gly	p.D719G	ENST00000360948	NM_001012338.2	719	gAt/gGt																																																																														
BLM	0	MSKCC	GRCh37	15	91306366	91306367	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	48	253	0	ENST00000355112.3:c.2054_2055del	p.Cys685PhefsTer10	p.C685Ffs*10	ENST00000355112	NM_000057.2	685	TGt/t																																																																														
MSH2	0	MSKCC	GRCh37	2	47705582	47705582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	127	250	0	ENST00000233146.2:c.2382A>G	p.Ile794Met	p.I794M	ENST00000233146	NM_000251.2	794	atA/atG																																																																														
APC	0	MSKCC	GRCh37	5	112175419	112175420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAG			P-0030088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	50	255	0	ENST00000257430.4:c.4128_4129insATAG	p.Val1377IlefsTer10	p.V1377Ifs*10	ENST00000257430	NM_000038.5	1376	-/ATAG																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9775925	9775926	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	249	597	0	ENST00000377346.4:c.389_390delinsTT	p.Ser130Phe	p.S130F	ENST00000377346	NM_005026.3	130	tCC/tTT																																																																														
MTOR	0	MSKCC	GRCh37	1	11190824	11190824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	172	334	0	ENST00000361445.4:c.5375C>T	p.Ala1792Val	p.A1792V	ENST00000361445	NM_004958.3	1792	gCg/gTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16255832	16255832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	172	426	0	ENST00000375759.3:c.3097G>A	p.Gly1033Arg	p.G1033R	ENST00000375759	NM_015001.2	1033	Gga/Aga																																																																														
SDHB	0	MSKCC	GRCh37	1	17359629	17359629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	168	321	0	ENST00000375499.3:c.212T>C	p.Met71Thr	p.M71T	ENST00000375499	NM_003000.2	71	aTg/aCg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100857	27100857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	198	440	0	ENST00000324856.7:c.4139C>T	p.Pro1380Leu	p.P1380L	ENST00000324856	NM_006015.4	1380	cCt/cTt																																																																														
NEGR1	0	MSKCC	GRCh37	1	72058545	72058545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	196	369	0	ENST00000357731.5:c.895G>A	p.Ala299Thr	p.A299T	ENST00000357731	NM_173808.2	299	Gct/Act																																																																														
NEGR1	0	MSKCC	GRCh37	1	72241963	72241963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	130	233	0	ENST00000357731.5:c.427G>A	p.Asp143Asn	p.D143N	ENST00000357731	NM_173808.2	143	Gac/Aac																																																																														
NRAS	0	MSKCC	GRCh37	1	115256595	115256595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139287106		P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	159	336	0	ENST00000369535.4:c.116C>T	p.Ser39Phe	p.S39F	ENST00000369535	NM_002524.4	39	tCt/tTt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120461978	120461979	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	168	404	0	ENST00000256646.2:c.5737_5738delinsTT	p.Pro1913Leu	p.P1913L	ENST00000256646	NM_024408.3	1913	CCa/TTa																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851415	156851415	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	253	694	0	ENST00000524377.1:c.2372A>G	p.Tyr791Cys	p.Y791C	ENST00000524377	NM_002529.3	791	tAc/tGc																																																																														
FH	0	MSKCC	GRCh37	1	241667423	241667423	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	228	432	2	ENST00000366560.3:c.1027C>T	p.Arg343Ter	p.R343*	ENST00000366560	NM_000143.3	343	Cga/Tga																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852436	63852436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	227	475	0	ENST00000279873.7:c.3214C>T	p.Pro1072Ser	p.P1072S	ENST00000279873	NM_032199.2	1072	Ccc/Tcc																																																																														
TET1	0	MSKCC	GRCh37	10	70332857	70332857	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	267	567	1	ENST00000373644.4:c.762A>T	p.Gln254His	p.Q254H	ENST00000373644	NM_030625.2	254	caA/caT																																																																														
TET1	0	MSKCC	GRCh37	10	70432771	70432771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	190	309	0	ENST00000373644.4:c.4793G>A	p.Arg1598Lys	p.R1598K	ENST00000373644	NM_030625.2	1598	aGa/aAa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114903742	114903742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	220	471	0	ENST00000543371.1:c.746C>T	p.Thr249Ile	p.T249I	ENST00000543371	NM_001198531.1	249	aCc/aTc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123353276	123353276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	273	541	0	ENST00000358487.5:c.56C>T	p.Ser19Phe	p.S19F	ENST00000358487	NM_000141.4	19	tCc/tTc																																																																														
HRAS	0	MSKCC	GRCh37	11	533854	533854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	228	643	0	ENST00000311189.7:c.202C>T	p.Arg68Trp	p.R68W	ENST00000311189		68	Cgg/Tgg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71943950	71943950	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	268	671	0	ENST00000298229.2:c.1883T>G	p.Phe628Cys	p.F628C	ENST00000298229	NM_001567.3	628	tTt/tGt																																																																														
ATM	0	MSKCC	GRCh37	11	108115615	108115615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	176	281	0	ENST00000278616.4:c.763G>A	p.Gly255Arg	p.G255R	ENST00000278616	NM_000051.3	255	Gga/Aga																																																																														
ATM	0	MSKCC	GRCh37	11	108153542	108153542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	137	148	0	ENST00000278616.4:c.3682G>A	p.Glu1228Lys	p.E1228K	ENST00000278616	NM_000051.3	1228	Gaa/Aaa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118370615	118370615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	109	220	0	ENST00000534358.1:c.6145C>T	p.Pro2049Ser	p.P2049S	ENST00000534358	NM_005933.3	2049	Cct/Tct																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374067	118374067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	168	374	0	ENST00000534358.1:c.7460C>T	p.Ser2487Phe	p.S2487F	ENST00000534358	NM_005933.3	2487	tCt/tTt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118390430	118390431	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	177	556	1	ENST00000534358.1:c.11244_11245delinsTT	p.Arg3749Cys	p.R3749C	ENST00000534358	NM_005933.3	3748	ttCCgt/ttTTgt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	165	347	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
KDM5A	0	MSKCC	GRCh37	12	465691	465691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	161	382	0	ENST00000399788.2:c.685G>A	p.Asp229Asn	p.D229N	ENST00000399788	NM_001042603.1	229	Gat/Aat																																																																														
CCND2	0	MSKCC	GRCh37	12	4385196	4385196	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	174	378	0	ENST00000261254.3:c.221A>T	p.Glu74Val	p.E74V	ENST00000261254	NM_001759.3	74	gAa/gTa																																																																														
RECQL	0	MSKCC	GRCh37	12	21639444	21639444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	176	184	0	ENST00000421138.2:c.470C>T	p.Ser157Leu	p.S157L	ENST00000421138		157	tCa/tTa																																																																														
H3F3C	0	MSKCC	GRCh37	12	31945069	31945069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	221	525	0	ENST00000340398.3:c.32C>T	p.Ser11Phe	p.S11F	ENST00000340398	NM_001013699.2	11	tCc/tTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46245297	46245297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	201	410	0	ENST00000334344.6:c.3391C>T	p.Pro1131Ser	p.P1131S	ENST00000334344	NM_152641.2	1131	Cca/Tca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431228	49431230	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	31	487	0	ENST00000301067.7:c.9909_9911del	p.Pro3304del	p.P3304del	ENST00000301067	NM_003482.3	3303	tcTCCc/tcc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433142	49433142	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	33	536	0	ENST00000301067.7:c.8230-1G>A		p.X2744_splice	ENST00000301067	NM_003482.3	2744																																																																															
KMT2D	0	MSKCC	GRCh37	12	49433357	49433357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	37	580	1	ENST00000301067.7:c.8090G>A	p.Arg2697His	p.R2697H	ENST00000301067	NM_003482.3	2697	cGc/cAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433632	49433632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	76	789	0	ENST00000301067.7:c.7921C>T	p.Pro2641Ser	p.P2641S	ENST00000301067	NM_003482.3	2641	Cct/Tct																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	40	724	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440431	49440431	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	267	597	0	ENST00000301067.7:c.4379delC	p.Pro1460HisfsTer46	p.P1460Hfs*46	ENST00000301067	NM_003482.3	1460	cCa/ca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444256	49444256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	369	858	0	ENST00000301067.7:c.3115C>T	p.Pro1039Ser	p.P1039S	ENST00000301067	NM_003482.3	1039	Cct/Tct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445430	49445431	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	50	854	3	ENST00000301067.7:c.2035_2036delinsTT	p.Pro679Phe	p.P679F	ENST00000301067	NM_003482.3	679	CCc/TTc																																																																														
GLI1	0	MSKCC	GRCh37	12	57864754	57864754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	45	613	0	ENST00000228682.2:c.2231G>A	p.Gly744Glu	p.G744E	ENST00000228682	NM_005269.2	744	gGa/gAa																																																																														
MDM2	0	MSKCC	GRCh37	12	69222560	69222560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	196	228	0	ENST00000462284.1:c.533C>T	p.Ser178Leu	p.S178L	ENST00000462284	NM_002392.5	178	tCa/tTa																																																																														
FLT3	0	MSKCC	GRCh37	13	28601228	28601228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	178	360	1	ENST00000241453.7:c.2204C>T	p.Ser735Phe	p.S735F	ENST00000241453	NM_004119.2	735	tCc/tTc																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281881	49281881	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	253	544	0	ENST00000282018.3:c.928G>T	p.Glu310Ter	p.E310*	ENST00000282018	NM_020377.2	310	Gag/Tag																																																																														
IRS2	0	MSKCC	GRCh37	13	110435811	110435811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	131	313	0	ENST00000375856.3:c.2590C>T	p.Pro864Ser	p.P864S	ENST00000375856	NM_003749.2	864	Cct/Tct																																																																														
PRKD1	0	MSKCC	GRCh37	14	30135385	30135385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	25	388	0	ENST00000331968.5:c.433C>T	p.Arg145Cys	p.R145C	ENST00000331968	NM_002742.2	145	Cgt/Tgt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061045	38061045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	102	286	0	ENST00000250448.2:c.944G>A	p.Gly315Glu	p.G315E	ENST00000250448	NM_004496.3	315	gGg/gAg																																																																														
DICER1	0	MSKCC	GRCh37	14	95582079	95582079	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	140	305	0	ENST00000343455.3:c.1832T>G	p.Phe611Cys	p.F611C	ENST00000343455	NM_177438.2	611	tTc/tGc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472644	88472644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	107	277	0	ENST00000360948.2:c.1911G>A	p.Met637Ile	p.M637I	ENST00000360948	NM_001012338.2	637	atG/atA																																																																														
AXIN1	0	MSKCC	GRCh37	16	339518	339519	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	251	698	1	ENST00000262320.3:c.2383_2384delinsTT	p.Pro795Phe	p.P795F	ENST00000262320	NM_003502.3	795	CCc/TTc																																																																														
AXIN1	0	MSKCC	GRCh37	16	343668	343668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	306	724	0	ENST00000262320.3:c.2006C>T	p.Ser669Phe	p.S669F	ENST00000262320	NM_003502.3	669	tCc/tTc																																																																														
AXIN1	0	MSKCC	GRCh37	16	396789	396790	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	212	538	1	ENST00000262320.3:c.236_237delinsTT	p.Thr79Ile	p.T79I	ENST00000262320	NM_003502.3	79	aCC/aTT																																																																														
TSC2	0	MSKCC	GRCh37	16	2114317	2114317	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	123	682	0	ENST00000219476.3:c.1491del	p.Glu498ArgfsTer37	p.E498Rfs*37	ENST00000219476	NM_000548.3	496	atC/at																																																																														
TSC2	0	MSKCC	GRCh37	16	2135027	2135027	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	219	621	0	ENST00000219476.3:c.4569G>T	p.Glu1523Asp	p.E1523D	ENST00000219476	NM_000548.3	1523	gaG/gaT																																																																														
TRAF7	0	MSKCC	GRCh37	16	2222305	2222305	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	243	648	0	ENST00000326181.6:c.589A>T	p.Ser197Cys	p.S197C	ENST00000326181	NM_032271.2	197	Agc/Tgc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857284	9857284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	179	449	1	ENST00000330684.3:c.4117G>A	p.Asp1373Asn	p.D1373N	ENST00000330684	NM_001134407.1	1373	Gat/Aat																																																																														
ERCC4	0	MSKCC	GRCh37	16	14038648	14038648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	168	340	0	ENST00000311895.7:c.1973G>A	p.Arg658Lys	p.R658K	ENST00000311895	NM_005236.2	658	aGa/aAa																																																																														
PALB2	0	MSKCC	GRCh37	16	23632746	23632746	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	240	428	0	ENST00000261584.4:c.3050del	p.Ala1017ValfsTer16	p.A1017Vfs*16	ENST00000261584	NM_024675.3	1017	gCt/gt																																																																														
MAPK3	0	MSKCC	GRCh37	16	30128078	30128078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	272	611	0	ENST00000263025.4:c.1051G>A	p.Glu351Lys	p.E351K	ENST00000263025	NM_002746.2	351	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68835618	68835618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	229	501	0	ENST00000261769.5:c.209C>T	p.Ser70Phe	p.S70F	ENST00000261769	NM_004360.3	70	tCc/tTc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72984765	72984765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	210	511	0	ENST00000268489.5:c.2819C>T	p.Pro940Leu	p.P940L	ENST00000268489	NM_006885.3	940	cCg/cTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89357423	89357424	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	138	457	0	ENST00000301030.4:c.394_395delinsTT	p.Pro132Leu	p.P132L	ENST00000301030	NM_001256183.1	132	CCa/TTa																																																																														
FANCA	0	MSKCC	GRCh37	16	89816261	89816262	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	209	491	1	ENST00000389301.3:c.3115_3116delinsAA	p.Gly1039Asn	p.G1039N	ENST00000389301	NM_000135.2	1039	GGc/AAc																																																																														
TP53	0	MSKCC	GRCh37	17	7579699	7579700	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	521	566	0	ENST00000269305.4:c.96_96+1delinsAA		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
NCOR1	0	MSKCC	GRCh37	17	16062178	16062178	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs201746136		P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	189	414	0	ENST00000268712.3:c.628G>C	p.Glu210Gln	p.E210Q	ENST00000268712	NM_006311.3	210	Gaa/Caa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16068451	16068451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	10	94	0	ENST00000268712.3:c.460G>A	p.Glu154Lys	p.E154K	ENST00000268712	NM_006311.3	154	Gaa/Aaa																																																																														
NF1	0	MSKCC	GRCh37	17	29576085	29576085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	217	473	0	ENST00000358273.4:c.4058C>T	p.Ser1353Phe	p.S1353F	ENST00000358273	NM_001042492.2	1353	tCc/tTc																																																																														
NF1	0	MSKCC	GRCh37	17	29664523	29664523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	208	449	0	ENST00000358273.4:c.6565C>T	p.Pro2189Ser	p.P2189S	ENST00000358273	NM_001042492.2	2189	Cct/Tct																																																																														
STAT3	0	MSKCC	GRCh37	17	40475020	40475020	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	154	380	0	ENST00000264657.5:c.1888+2T>C		p.X630_splice	ENST00000264657	NM_139276.2	630																																																																															
STAT3	0	MSKCC	GRCh37	17	40500530	40500530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	216	381	0	ENST00000264657.5:c.5C>T	p.Ala2Val	p.A2V	ENST00000264657	NM_139276.2	2	gCc/gTc																																																																														
EZH1	0	MSKCC	GRCh37	17	40870597	40870597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	234	503	0	ENST00000428826.2:c.806T>C	p.Leu269Pro	p.L269P	ENST00000428826		269	cTt/cCt																																																																														
RNF43	0	MSKCC	GRCh37	17	56435554	56435554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	225	587	0	ENST00000407977.2:c.1583C>T	p.Ser528Phe	p.S528F	ENST00000407977		528	tCt/tTt																																																																														
SOX9	0	MSKCC	GRCh37	17	70120457	70120457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	386	770	0	ENST00000245479.2:c.1459C>T	p.Pro487Ser	p.P487S	ENST00000245479	NM_000346.3	487	Cct/Tct																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11118624	11118624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	219	513	0	ENST00000344626.4:c.2048C>T	p.Pro683Leu	p.P683L	ENST00000344626	NM_003072.3	683	cCc/cTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271898	15271898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	257	754	0	ENST00000263388.2:c.6541C>T	p.Pro2181Ser	p.P2181S	ENST00000263388	NM_000435.2	2181	Cca/Tca																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272138	15272138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	249	625	2	ENST00000263388.2:c.6301C>T	p.Pro2101Ser	p.P2101S	ENST00000263388	NM_000435.2	2101	Ccc/Tcc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281173	15281173	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	294	686	0	ENST00000263388.2:c.5083G>T	p.Glu1695Ter	p.E1695*	ENST00000263388	NM_000435.2	1695	Gaa/Taa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210419	36210419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	47	502	0	ENST00000222270.7:c.412C>T	p.Arg138Cys	p.R138C	ENST00000222270	NM_014727.1	138	Cgc/Tgc																																																																														
CIC	0	MSKCC	GRCh37	19	42791797	42791797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	268	626	1	ENST00000575354.2:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000575354	NM_015125.3	228	cGg/cAg																																																																														
CIC	0	MSKCC	GRCh37	19	42791808	42791808	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	264	642	0	ENST00000575354.2:c.694A>G	p.Lys232Glu	p.K232E	ENST00000575354	NM_015125.3	232	Aag/Gag																																																																														
CIC	0	MSKCC	GRCh37	19	42796539	42796539	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	228	680	0	ENST00000575354.2:c.3096del	p.Tyr1032Ter	p.Y1032*	ENST00000575354	NM_015125.3	1032	taC/ta																																																																														
CIC	0	MSKCC	GRCh37	19	42798339	42798339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	225	645	0	ENST00000575354.2:c.4210C>T	p.Pro1404Ser	p.P1404S	ENST00000575354	NM_015125.3	1404	Ccc/Tcc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52719873	52719873	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	255	535	0	ENST00000322088.6:c.1085T>A	p.Ile362Asn	p.I362N	ENST00000322088	NM_014225.5	362	aTc/aAc																																																																														
MYCN	0	MSKCC	GRCh37	2	16085773	16085773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	183	429	0	ENST00000281043.3:c.949G>A	p.Glu317Lys	p.E317K	ENST00000281043	NM_005378.4	317	Gag/Aag																																																																														
ALK	0	MSKCC	GRCh37	2	29443615	29443615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	265	585	0	ENST00000389048.3:c.3602G>A	p.Gly1201Glu	p.G1201E	ENST00000389048	NM_004304.4	1201	gGg/gAg																																																																														
MSH6	0	MSKCC	GRCh37	2	48027654	48027654	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	123	271	0	ENST00000234420.5:c.2532G>C	p.Met844Ile	p.M844I	ENST00000234420	NM_000179.2	844	atG/atC																																																																														
BARD1	0	MSKCC	GRCh37	2	215593635	215593635	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	113	304	0	ENST00000260947.4:c.2099del	p.Gly700AlafsTer14	p.G700Afs*14	ENST00000260947	NM_000465.2	700	gGc/gc																																																																														
INHA	0	MSKCC	GRCh37	2	220440183	220440184	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	255	670	1	ENST00000243786.2:c.1036_1037delinsAA	p.Gly346Lys	p.G346K	ENST00000243786	NM_002191.3	346	GGa/AAa																																																																														
IRS1	0	MSKCC	GRCh37	2	227661350	227661351	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	234	554	0	ENST00000305123.5:c.2104_2105delinsAA	p.Gly702Lys	p.G702K	ENST00000305123	NM_005544.2	702	GGg/AAg																																																																														
PAK7	0	MSKCC	GRCh37	20	9624936	9624936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	147	299	0	ENST00000353224.5:c.41C>A	p.Pro14Gln	p.P14Q	ENST00000353224	NM_177990.2	14	cCg/cAg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024885	31024885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	190	526	0	ENST00000375687.4:c.4370C>T	p.Ser1457Phe	p.S1457F	ENST00000375687	NM_015338.5	1457	tCc/tTc																																																																														
SRC	0	MSKCC	GRCh37	20	36031679	36031680	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	251	661	2	ENST00000358208.4:c.1508_1509delinsAA	p.Arg503Gln	p.R503Q	ENST00000358208		503	cGG/cAA																																																																														
PTPRT	0	MSKCC	GRCh37	20	40828006	40828007	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	115	324	0	ENST00000373198.4:c.2421_2422delinsAA	p.Glu808Lys	p.E808K	ENST00000373198	NM_133170.3	807	aaGGag/aaAAag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40899064	40899065	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	179	514	1	ENST00000373198.4:c.2205_2206delinsAT	p.Gly736Trp	p.G736W	ENST00000373198	NM_133170.3	735	ccGGgg/ccATgg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264097	46264097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	102	312	0	ENST00000371998.3:c.1144C>T	p.Pro382Ser	p.P382S	ENST00000371998		382	Cct/Tct																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264865	46264865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	180	351	0	ENST00000371998.3:c.1735C>T	p.Pro579Ser	p.P579S	ENST00000371998		579	Cca/Tca																																																																														
RTEL1	0	MSKCC	GRCh37	20	62292792	62292792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	142	364	0	ENST00000508582.2:c.244C>T	p.Pro82Ser	p.P82S	ENST00000508582		82	Ccg/Tcg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62324263	62324263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	299	749	1	ENST00000508582.2:c.2830C>A	p.Gln944Lys	p.Q944K	ENST00000508582		944	Cag/Aag																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171604	36171604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	106	233	0	ENST00000300305.3:c.961C>T	p.Leu321Phe	p.L321F	ENST00000300305		321	Ctc/Ttc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42843805	42843805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	192	434	0	ENST00000398585.3:c.1114C>T	p.Pro372Ser	p.P372S	ENST00000398585	NM_001135099.1	372	Cca/Tca																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715621	30715621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	95	237	1	ENST00000359013.4:c.1354C>T	p.Pro452Ser	p.P452S	ENST00000359013	NM_001024847.2	452	Cca/Tca																																																																														
MLH1	0	MSKCC	GRCh37	3	37042469	37042469	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	176	216	0	ENST00000231790.2:c.231T>G	p.Cys77Trp	p.C77W	ENST00000231790	NM_000249.3	77	tgT/tgG																																																																														
SETD2	0	MSKCC	GRCh37	3	47162327	47162327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	137	321	0	ENST00000409792.3:c.3799C>T	p.Pro1267Ser	p.P1267S	ENST00000409792	NM_014159.6	1267	Cct/Tct																																																																														
BAP1	0	MSKCC	GRCh37	3	52441265	52441266	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	199	455	0	ENST00000460680.1:c.504_505delinsTT	p.His169Tyr	p.H169Y	ENST00000460680	NM_004656.3	168	ttCCac/ttTTac																																																																														
EPHA3	0	MSKCC	GRCh37	3	89445067	89445067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	177	431	0	ENST00000336596.2:c.1387C>T	p.Pro463Ser	p.P463S	ENST00000336596	NM_005233.5	463	Cct/Tct																																																																														
GSK3B	0	MSKCC	GRCh37	3	119582364	119582364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	129	278	0	ENST00000316626.5:c.1037A>G	p.Glu346Gly	p.E346G	ENST00000316626		346	gAa/gGa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967173	134967173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	138	360	2	ENST00000398015.3:c.2512G>A	p.Glu838Lys	p.E838K	ENST00000398015	NM_004441.4	838	Gag/Aag																																																																														
EPHB1	0	MSKCC	GRCh37	3	134977925	134977925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	248	517	0	ENST00000398015.3:c.2918G>A	p.Arg973Lys	p.R973K	ENST00000398015	NM_004441.4	973	aGg/aAg																																																																														
PRKCI	0	MSKCC	GRCh37	3	170015153	170015153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	219	438	0	ENST00000295797.4:c.1559C>T	p.Pro520Leu	p.P520L	ENST00000295797	NM_002740.5	520	cCg/cTg																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502237	186502237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	107	216	0	ENST00000323963.5:c.46G>A	p.Glu16Lys	p.E16K	ENST00000323963		16	Gag/Aag																																																																														
TP63	0	MSKCC	GRCh37	3	189607273	189607273	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	211	495	0	ENST00000264731.3:c.1652G>T	p.Ser551Ile	p.S551I	ENST00000264731	NM_003722.4	551	aGt/aTt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127318	55127318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	191	433	0	ENST00000257290.5:c.106G>A	p.Glu36Lys	p.E36K	ENST00000257290	NM_006206.4	36	Gaa/Aaa																																																																														
KIT	0	MSKCC	GRCh37	4	55602770	55602770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	140	310	0	ENST00000288135.5:c.2591C>T	p.Ser864Phe	p.S864F	ENST00000288135	NM_000222.2	864	tCt/tTt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201816	66201816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	178	399	1	ENST00000273854.3:c.2686C>T	p.Arg896Cys	p.R896C	ENST00000273854	NM_004439.5	896	Cgt/Tgt																																																																														
TET2	0	MSKCC	GRCh37	4	106155524	106155524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	181	375	0	ENST00000380013.4:c.425C>A	p.Ser142Tyr	p.S142Y	ENST00000380013	NM_001127208.2	142	tCc/tAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187541201	187541201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	130	313	0	ENST00000441802.2:c.6539C>T	p.Pro2180Leu	p.P2180L	ENST00000441802	NM_005245.3	2180	cCt/cTt																																																																														
FAT1	0	MSKCC	GRCh37	4	187628251	187628251	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	237	565	0	ENST00000441802.2:c.2731del	p.Val911SerfsTer3	p.V911Sfs*3	ENST00000441802	NM_005245.3	911	Gtc/tc																																																																														
FAT1	0	MSKCC	GRCh37	4	187628763	187628763	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	276	515	0	ENST00000441802.2:c.2219A>G	p.Asn740Ser	p.N740S	ENST00000441802	NM_005245.3	740	aAc/aGc																																																																														
TERT	0	MSKCC	GRCh37	5	1278850	1278850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	244	484	0	ENST00000310581.5:c.2192G>A	p.Ser731Asn	p.S731N	ENST00000310581	NM_198253.2	731	aGc/aAc																																																																														
TERT	0	MSKCC	GRCh37	5	1294672	1294672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	169	442	0	ENST00000310581.5:c.329G>C	p.Gly110Ala	p.G110A	ENST00000310581	NM_198253.2	110	gGc/gCc																																																																														
TERT	0	MSKCC	GRCh37	5	1295204	1295204	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs2735943		P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	139	274	0				ENST00000310581	NM_198253.2																																																																																
DROSHA	0	MSKCC	GRCh37	5	31437349	31437349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	255	489	0	ENST00000344624.3:c.2939C>A	p.Thr980Asn	p.T980N	ENST00000344624		980	aCc/aAc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31485041	31485041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	152	107	0	ENST00000344624.3:c.1943T>C	p.Phe648Ser	p.F648S	ENST00000344624		648	tTt/tCt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67576786	67576786	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	170	206	0	ENST00000274335.5:c.868A>T	p.Ile290Leu	p.I290L	ENST00000274335		290	Ata/Tta																																																																														
RASA1	0	MSKCC	GRCh37	5	86667993	86667993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	108	247	0	ENST00000274376.6:c.1757C>T	p.Ser586Phe	p.S586F	ENST00000274376	NM_002890.2	586	tCc/tTc																																																																														
APC	0	MSKCC	GRCh37	5	112102944	112102945	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	139	321	2	ENST00000257430.4:c.279_280delinsTT	p.Arg94Cys	p.R94C	ENST00000257430	NM_000038.5	93	ctCCgt/ctTTgt																																																																														
APC	0	MSKCC	GRCh37	5	112179530	112179530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	132	341	0	ENST00000257430.4:c.8239C>T	p.Pro2747Ser	p.P2747S	ENST00000257430	NM_000038.5	2747	Cct/Tct																																																																														
NSD1	0	MSKCC	GRCh37	5	176707714	176707714	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	174	432	1	ENST00000439151.2:c.5771T>A	p.Val1924Glu	p.V1924E	ENST00000439151	NM_022455.4	1924	gTg/gAg																																																																														
IRF4	0	MSKCC	GRCh37	6	401645	401645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	185	458	1	ENST00000380956.4:c.967G>A	p.Gly323Arg	p.G323R	ENST00000380956	NM_001195286.1	323	Ggg/Agg																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056149	26056149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	183	337	0	ENST00000343677.2:c.508G>A	p.Val170Met	p.V170M	ENST00000343677	NM_005319.3	170	Gtg/Atg																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778137	27778137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	155	557	0	ENST00000369163.2:c.286G>A	p.Ala96Thr	p.A96T	ENST00000369163	NM_003536.2	96	Gca/Aca																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778157	27778158	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	153	596	0	ENST00000369163.2:c.306_307delinsAA	p.Gly103Arg	p.G103R	ENST00000369163	NM_003536.2	102	gtGGgg/gtAAgg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911058	29911059	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	87	552	1	ENST00000376809.5:c.357_358delinsTT	p.Gln120Ter	p.Q120*	ENST00000376809	NM_002116.7	119	atCCag/atTTag																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324097	31324097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	143	320	0	ENST00000412585.2:c.466T>C	p.Ser156Pro	p.S156P	ENST00000412585	NM_005514.6	156	Tcc/Ccc																																																																														
STK19	0	MSKCC	GRCh37	6	31939793	31939793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	300	669	0	ENST00000375331.2:c.20C>T	p.Ala7Val	p.A7V	ENST00000375331	NM_004197.1	7	gCt/gTt																																																																														
PIM1	0	MSKCC	GRCh37	6	37140939	37140939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	112	285	0	ENST00000373509.5:c.775G>A	p.Val259Ile	p.V259I	ENST00000373509	NM_002648.3	259	Gtc/Atc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956699	93956699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	124	280	0	ENST00000369303.4:c.2537T>C	p.Ile846Thr	p.I846T	ENST00000369303	NM_004440.3	846	aTa/aCa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93969189	93969189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	130	232	0	ENST00000369303.4:c.1807C>T	p.Pro603Ser	p.P603S	ENST00000369303	NM_004440.3	603	Cca/Tca																																																																														
EPHA7	0	MSKCC	GRCh37	6	93979219	93979219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	125	261	0	ENST00000369303.4:c.1609G>A	p.Glu537Lys	p.E537K	ENST00000369303	NM_004440.3	537	Gaa/Aaa																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120377	94120377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	141	271	0	ENST00000369303.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000369303	NM_004440.3	225	tCc/tTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120620	94120620	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	139	343	0	ENST00000369303.4:c.431T>A	p.Val144Glu	p.V144E	ENST00000369303	NM_004440.3	144	gTa/gAa																																																																														
FYN	0	MSKCC	GRCh37	6	111983139	111983140	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	140	368	0	ENST00000368678.4:c.1407_1408delinsTT	p.Arg470Trp	p.R470W	ENST00000368678		469	aaCCgg/aaTTgg																																																																														
ROS1	0	MSKCC	GRCh37	6	117609838	117609839	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	212	491	0	ENST00000368508.3:c.6860dup	p.Ser2288ValfsTer2	p.S2288Vfs*2	ENST00000368508	NM_002944.2	2287	aag/aaAg																																																																														
ROS1	0	MSKCC	GRCh37	6	117645576	117645576	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	165	274	0	ENST00000368508.3:c.5560G>A	p.Asp1854Asn	p.D1854N	ENST00000368508	NM_002944.2	1854	Gat/Aat																																																																														
ROS1	0	MSKCC	GRCh37	6	117700228	117700228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	175	337	0	ENST00000368508.3:c.2591G>A	p.Gly864Glu	p.G864E	ENST00000368508	NM_002944.2	864	gGa/gAa																																																																														
ROS1	0	MSKCC	GRCh37	6	117737457	117737457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	214	297	0	ENST00000368508.3:c.192G>T	p.Trp64Cys	p.W64C	ENST00000368508	NM_002944.2	64	tgG/tgT																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200032	138200033	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	139	418	1	ENST00000237289.4:c.1450_1451delinsTT	p.Pro484Phe	p.P484F	ENST00000237289	NM_001270507.1	484	CCc/TTc																																																																														
LATS1	0	MSKCC	GRCh37	6	149997781	149997781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	171	416	0	ENST00000253339.5:c.2686C>T	p.Arg896Trp	p.R896W	ENST00000253339		896	Cgg/Tgg																																																																														
LATS1	0	MSKCC	GRCh37	6	150004239	150004239	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	145	152	0	ENST00000253339.5:c.1986del	p.Lys662AsnfsTer3	p.K662Nfs*3	ENST00000253339		662	aaA/aa																																																																														
PARK2	0	MSKCC	GRCh37	6	162864395	162864396	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	161	419	0	ENST00000366898.1:c.117_118delinsTT	p.Gln40Ter	p.Q40*	ENST00000366898	NM_004562.2	39	gaCCag/gaTTag																																																																														
CARD11	0	MSKCC	GRCh37	7	2985538	2985538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	234	461	0	ENST00000396946.4:c.273C>A	p.Phe91Leu	p.F91L	ENST00000396946	NM_032415.4	91	ttC/ttA																																																																														
HGF	0	MSKCC	GRCh37	7	81386572	81386572	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	168	344	0	ENST00000222390.5:c.415A>C	p.Thr139Pro	p.T139P	ENST00000222390	NM_000601.4	139	Aca/Cca																																																																														
HGF	0	MSKCC	GRCh37	7	81399215	81399215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	213	510	0	ENST00000222390.5:c.73G>A	p.Ala25Thr	p.A25T	ENST00000222390	NM_000601.4	25	Gcc/Acc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106523478	106523478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	107	204	0	ENST00000359195.3:c.2630G>A	p.Gly877Glu	p.G877E	ENST00000359195	NM_002649.2	877	gGa/gAa																																																																														
MET	0	MSKCC	GRCh37	7	116397714	116397716	+	frameshift_variant	Frame_Shift_Del	DEL	CGC	CGC	TG			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	218	392	1	ENST00000397752.3:c.1988_1990delinsTG	p.Ser663LeufsTer15	p.S663Lfs*15	ENST00000397752	NM_000245.2	663	tCGCcg/tTGcg																																																																														
MET	0	MSKCC	GRCh37	7	116412025	116412025	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	295	457	0	ENST00000397752.3:c.3010C>T	p.Arg1004Ter	p.R1004*	ENST00000397752	NM_000245.2	1004	Cga/Tga																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859881	151859881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	126	293	0	ENST00000262189.6:c.10781C>T	p.Ser3594Phe	p.S3594F	ENST00000262189	NM_170606.2	3594	tCt/tTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878310	151878310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	206	477	0	ENST00000262189.6:c.6635C>T	p.Pro2212Leu	p.P2212L	ENST00000262189	NM_170606.2	2212	cCt/cTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151884350	151884350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	81	170	0	ENST00000262189.6:c.5005C>T	p.Pro1669Ser	p.P1669S	ENST00000262189	NM_170606.2	1669	Cct/Tct																																																																														
XRCC2	0	MSKCC	GRCh37	7	152346145	152346145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	234	452	0	ENST00000359321.1:c.425C>A	p.Ser142Tyr	p.S142Y	ENST00000359321	NM_005431.1	142	tCt/tAt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133386	38133386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	114	299	0	ENST00000317025.8:c.4087C>T	p.Pro1363Ser	p.P1363S	ENST00000317025	NM_023034.1	1363	Ccg/Tcg																																																																														
FGFR1	0	MSKCC	GRCh37	8	38271802	38271802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	231	412	0	ENST00000425967.3:c.2147C>T	p.Ser716Phe	p.S716F	ENST00000425967	NM_001174067.1	716	tCt/tTt																																																																														
FGFR1	0	MSKCC	GRCh37	8	38275777	38275777	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	248	571	0	ENST00000425967.3:c.1492G>C	p.Glu498Gln	p.E498Q	ENST00000425967	NM_001174067.1	498	Gaa/Caa																																																																														
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	237	406	0	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																														
LYN	0	MSKCC	GRCh37	8	56879420	56879420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	232	532	0	ENST00000519728.1:c.937G>A	p.Glu313Lys	p.E313K	ENST00000519728	NM_002350.3	313	Gag/Aag																																																																														
PREX2	0	MSKCC	GRCh37	8	68956766	68956766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	228	539	1	ENST00000288368.4:c.884T>C	p.Leu295Pro	p.L295P	ENST00000288368	NM_024870.2	295	cTt/cCt																																																																														
PREX2	0	MSKCC	GRCh37	8	68956771	68956771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	219	539	0	ENST00000288368.4:c.889C>T	p.Arg297Cys	p.R297C	ENST00000288368	NM_024870.2	297	Cgt/Tgt																																																																														
PREX2	0	MSKCC	GRCh37	8	69104721	69104721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	182	363	0	ENST00000288368.4:c.4565G>A	p.Gly1522Asp	p.G1522D	ENST00000288368	NM_024870.2	1522	gGc/gAc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70970886	70970887	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	142	412	1	ENST00000276594.2:c.1374_1375delinsTT	p.Arg459Trp	p.R459W	ENST00000276594	NM_024504.3	458	caCCgg/caTTgg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486007	8486007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	181	381	0	ENST00000356435.5:c.2810T>C	p.Leu937Ser	p.L937S	ENST00000356435		937	tTa/tCa																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128246755	128246755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	478	476	0	ENST00000265960.3:c.1174C>T	p.His392Tyr	p.H392Y	ENST00000265960	NM_001006617.1	392	Cac/Tac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391340	139391340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	599	750	0	ENST00000277541.6:c.6851C>T	p.Thr2284Ile	p.T2284I	ENST00000277541	NM_017617.3	2284	aCc/aTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139397721	139397721	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	260	622	0	ENST00000277541.6:c.5080C>T	p.Gln1694Ter	p.Q1694*	ENST00000277541	NM_017617.3	1694	Cag/Tag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399130	139399131	+	missense_variant	Missense_Mutation	DNP	GA	GA	AC			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	230	594	2	ENST00000277541.6:c.5012_5013delinsGT	p.Val1671Gly	p.V1671G	ENST00000277541	NM_017617.3	1671	gTC/gGT																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399967	139399967	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	553	609	0	ENST00000277541.6:c.4381A>T	p.Lys1461Ter	p.K1461*	ENST00000277541	NM_017617.3	1461	Aag/Tag																																																																														
EGFL7	0	MSKCC	GRCh37	9	139565401	139565401	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	476	595	0	ENST00000308874.7:c.572-1G>A		p.X191_splice	ENST00000308874		191																																																																															
EIF1AX	0	MSKCC	GRCh37	X	20148671	20148671	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	232	93	0	ENST00000379607.5:c.392T>C	p.Phe131Ser	p.F131S	ENST00000379607	NM_001412.3	131	tTt/tCt																																																																														
ATRX	0	MSKCC	GRCh37	X	76938110	76938110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	266	226	1	ENST00000373344.5:c.2638G>A	p.Glu880Lys	p.E880K	ENST00000373344	NM_000489.3	880	Gaa/Aaa																																																																														
ROS1	0	MSKCC	GRCh37	6	117737457	117737457	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	181	297	0	ENST00000368508.3:c.192G>A	p.Trp64Ter	p.W64*	ENST00000368508	NM_002944.2	64	tgG/tgA																																																																														
FANCA	0	MSKCC	GRCh37	16	89816262	89816262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	208	490	0	ENST00000389301.3:c.3115G>A	p.Gly1039Ser	p.G1039S	ENST00000389301	NM_000135.2	1039	Ggc/Agc																																																																														
FANCA	0	MSKCC	GRCh37	16	89816261	89816261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	209	492	0	ENST00000389301.3:c.3116G>A	p.Gly1039Asp	p.G1039D	ENST00000389301	NM_000135.2	1039	gGc/gAc																																																																														
ARID2	0	MSKCC	GRCh37	12	46123837	46123837	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0030091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	27	273	0	ENST00000334344.6:c.103A>T	p.Lys35Ter	p.K35*	ENST00000334344	NM_152641.2	35	Aaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	98	668	0	ENST00000269305.4:c.454C>T	p.Pro152Ser	p.P152S	ENST00000269305	NM_001126112.2	152	Ccg/Tcg																																																																														
ATM	0	MSKCC	GRCh37	11	108114748	108114748	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	21	322	0	ENST00000278616.4:c.565A>G	p.Arg189Gly	p.R189G	ENST00000278616	NM_000051.3	189	Aga/Gga																																																																														
PTPN11	0	MSKCC	GRCh37	12	112915487	112915487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	24	439	0	ENST00000351677.2:c.886G>T	p.Asp296Tyr	p.D296Y	ENST00000351677	NM_002834.3	296	Gat/Tat																																																																														
FLT4	0	MSKCC	GRCh37	5	180056347	180056347	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs138606846		P-0030091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	78	660	0	ENST00000261937.6:c.897C>A	p.Asn299Lys	p.N299K	ENST00000261937	NM_182925.4	299	aaC/aaA																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870904	12870904	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014464-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	73	481	0	ENST00000228872.4:c.131A>G	p.Asp44Gly	p.D44G	ENST00000228872	NM_004064.3	44	gAc/gGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0030104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	102	585	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	77	668	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	78	588	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0030109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	36	237	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
PPARG	0	MSKCC	GRCh37	3	12458330	12458330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	166	558	0	ENST00000287820.6:c.947G>C	p.Arg316Pro	p.R316P	ENST00000287820	NM_015869.4	316	cGc/cCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0015149-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	367	597	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101125	41101125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015149-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			903	48	543	1	ENST00000373198.4:c.1231G>A	p.Gly411Ser	p.G411S	ENST00000373198	NM_133170.3	411	Ggc/Agc																																																																														
RNF43	0	MSKCC	GRCh37	17	56439913	56439914	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0015149-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	436	584	0	ENST00000407977.2:c.678_679del	p.His226GlnfsTer32	p.H226Qfs*32	ENST00000407977		226	caCAgc/cagc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	205	615	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727441	66727441	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	18	503	0	ENST00000307102.5:c.157T>G	p.Phe53Val	p.F53V	ENST00000307102	NM_002755.3	53	Ttt/Gtt																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138857	64138857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	150	592	1	ENST00000334205.4:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000334205	NM_003942.2	742	Cgc/Tgc																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911071	29911072	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TATA			P-0024054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	119	619	0	ENST00000376809.5:c.370_371insTATA	p.Gly124ValfsTer2	p.G124Vfs*2	ENST00000376809	NM_002116.7	124	ggc/gTATAgc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81990400	81990400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	114	622	1	ENST00000359376.3:c.3671G>A	p.Arg1224His	p.R1224H	ENST00000359376	NM_002661.3	1224	cGc/cAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101385	27101392	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCCTCT	GTCCCTCT	-			P-0024054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	48	527	0	ENST00000324856.7:c.4668_4675del	p.Ser1558CysfsTer11	p.S1558Cfs*11	ENST00000324856	NM_006015.4	1556	gGTCCCTCT/g																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604785	48604798	+	frameshift_variant	Frame_Shift_Del	DEL	TAGACGAAGTACTT	TAGACGAAGTACTT	-			P-0024054-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	56	429	0	ENST00000342988.3:c.1607_1620del	p.Leu536ProfsTer36	p.L536Pfs*36	ENST00000342988	NM_005359.5	536	cTAGACGAAGTACTT/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	229	545	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0028640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	111	338	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	205	483	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																														
CBL	0	MSKCC	GRCh37	11	119144612	119144612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	133	396	0	ENST00000264033.4:c.625C>G	p.Leu209Val	p.L209V	ENST00000264033	NM_005188.3	209	Cta/Gta																																																																														
SLX4	0	MSKCC	GRCh37	16	3644489	3644489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	210	607	0	ENST00000294008.3:c.2125G>T	p.Val709Leu	p.V709L	ENST00000294008	NM_032444.2	709	Gtg/Ttg																																																																														
FANCC	0	MSKCC	GRCh37	9	97912329	97912329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	101	417	0	ENST00000289081.3:c.562G>A	p.Val188Ile	p.V188I	ENST00000289081	NM_000136.2	188	Gtc/Atc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591948	48591969	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CACAGGACAGAAGCCATTGAGA	CACAGGACAGAAGCCATTGAGA	AGATAGTTACTTTAAAAAATT			P-0028640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	42	355	1	ENST00000342988.3:c.1111_1132delinsAGATAGTTACTTTAAAAAATT	p.His371ArgfsTer2	p.H371Rfs*2	ENST00000342988	NM_005359.5	371	CACAGGACAGAAGCCATTGAGAga/AGATAGTTACTTTAAAAAATTga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	43	451	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	43	451	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	67	576	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			798	71	685	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515211	103515211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	32	463	0	ENST00000355739.4:c.1712C>T	p.Pro571Leu	p.P571L	ENST00000355739	NM_000123.3	571	cCg/cTg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	43	451	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	38	245	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	146	517	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	152	429	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	57	232	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724322	112724322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	140	517	0	ENST00000369452.4:c.206A>G	p.Asp69Gly	p.D69G	ENST00000369452	NM_007373.3	69	gAc/gGc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851306	156851306	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	125	477	1	ENST00000524377.1:c.2263G>T	p.Glu755Ter	p.E755*	ENST00000524377	NM_002529.3	755	Gag/Tag																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741825	17741825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	49	131	0	ENST00000250003.3:c.496G>A	p.Asp166Asn	p.D166N	ENST00000250003	NM_002478.4	166	Gac/Aac																																																																														
SOX9	0	MSKCC	GRCh37	17	70119668	70119685	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTTTATTGTCCACAGGG	CTTTTATTGTCCACAGGG	-			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	89	366	0	ENST00000245479.2:c.686-15_688del		p.X229_splice	ENST00000245479	NM_000346.3	229																																																																															
VHL	0	MSKCC	GRCh37	3	10188284	10188284	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	86	474	0	ENST00000256474.2:c.427G>C	p.Asp143His	p.D143H	ENST00000256474	NM_000551.3	143	Gac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0028643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	118	281	1	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	492	565	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	700	496	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
CDH1	0	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	169	292	0	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433950	49433950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	235	612	0	ENST00000301067.7:c.7603C>T	p.Arg2535Cys	p.R2535C	ENST00000301067	NM_003482.3	2535	Cgt/Tgt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481806	56481806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	217	464	0	ENST00000267101.3:c.734C>G	p.Ala245Gly	p.A245G	ENST00000267101	NM_001982.3	245	gCc/gGc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15296488	15296488	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	246	644	2	ENST00000263388.2:c.1954C>A	p.Pro652Thr	p.P652T	ENST00000263388	NM_000435.2	652	Ccc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	403	699	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	230	227	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495022	56495022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	342	572	1	ENST00000267101.3:c.3379C>T	p.Arg1127Cys	p.R1127C	ENST00000267101	NM_001982.3	1127	Cgc/Tgc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	244	227	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
MAX	0	MSKCC	GRCh37	14	65544748	65544748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	265	371	1	ENST00000358664.4:c.178C>T	p.Arg60Trp	p.R60W	ENST00000358664	NM_002382.4	60	Cgg/Tgg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52662939	52662939	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	370	461	0	ENST00000394830.3:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000394830	NM_018313.4	472	Cga/Tga																																																																														
NF1	0	MSKCC	GRCh37	17	29665110	29665110	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	449	530	1	ENST00000358273.4:c.6772C>T	p.Arg2258Ter	p.R2258*	ENST00000358273	NM_001042492.2	2258	Cga/Tga																																																																														
BRIP1	0	MSKCC	GRCh37	17	59793411	59793411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	292	368	0	ENST00000259008.2:c.2393G>A	p.Arg798Gln	p.R798Q	ENST00000259008	NM_032043.2	798	cGa/cAa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99155399	99155399	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	314	433	0	ENST00000074304.5:c.625C>T	p.Arg209Ter	p.R209*	ENST00000074304	NM_001134224.1	209	Cga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445178	49445178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	341	640	0	ENST00000301067.7:c.2288C>T	p.Pro763Leu	p.P763L	ENST00000301067	NM_003482.3	763	cCg/cTg																																																																														
MPL	0	MSKCC	GRCh37	1	43804370	43804370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	671	457	0	ENST00000372470.3:c.370G>A	p.Val124Ile	p.V124I	ENST00000372470	NM_005373.2	124	Gtc/Atc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849828	156849828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	300	470	1	ENST00000524377.1:c.2084C>T	p.Pro695Leu	p.P695L	ENST00000524377	NM_002529.3	695	cCg/cTg																																																																														
MDM4	0	MSKCC	GRCh37	1	204506581	204506581	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145156544		P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	364	463	0	ENST00000367182.3:c.367G>A	p.Ala123Thr	p.A123T	ENST00000367182	NM_001278516.1	123	Gca/Aca																																																																														
CHEK1	0	MSKCC	GRCh37	11	125497721	125497721	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	123	379	0	ENST00000428830.2:c.285A>T	p.Arg95Ser	p.R95S	ENST00000428830	NM_001114121.2	95	agA/agT																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11958211	11958211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	252	300	0	ENST00000353533.5:c.121C>T	p.Arg41Cys	p.R41C	ENST00000353533	NM_003010.3	41	Cgc/Tgc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58700977	58700977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	427	597	2	ENST00000305921.3:c.568G>A	p.Val190Ile	p.V190I	ENST00000305921	NM_003620.3	190	Gta/Ata																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0028646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	333	660	0	ENST00000269305.4:c.672+1delG		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
FGF4	0	MSKCC	GRCh37	11	69588177	69588177	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	165	665	0	ENST00000168712.1:c.521A>T	p.Tyr174Phe	p.Y174F	ENST00000168712	NM_002007.2	174	tAc/tTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93974331	93974331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	151	585	0	ENST00000369303.4:c.1723G>T	p.Gly575Cys	p.G575C	ENST00000369303	NM_004440.3	575	Ggc/Tgc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	148	493	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
PMS2	0	MSKCC	GRCh37	7	6035253	6035253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	98	313	0	ENST00000265849.7:c.815T>G	p.Phe272Cys	p.F272C	ENST00000265849	NM_000535.5	272	tTc/tGc																																																																														
HGF	0	MSKCC	GRCh37	7	81331912	81331912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	19	217	1	ENST00000222390.5:c.2172G>T	p.Lys724Asn	p.K724N	ENST00000222390	NM_000601.4	724	aaG/aaT																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	297	605	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MSI1	0	MSKCC	GRCh37	12	120805842	120805842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	118	656	1	ENST00000257552.2:c.236C>T	p.Ala79Val	p.A79V	ENST00000257552	NM_002442.3	79	gCg/gTg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678430	88678430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	114	669	0	ENST00000360948.2:c.1106C>A	p.Thr369Asn	p.T369N	ENST00000360948	NM_001012338.2	369	aCc/aAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821692	72821692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	48	247	0	ENST00000268489.5:c.10483G>T	p.Val3495Leu	p.V3495L	ENST00000268489	NM_006885.3	3495	Gtg/Ttg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52714667	52714667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	172	529	0	ENST00000322088.6:c.425C>A	p.Thr142Asn	p.T142N	ENST00000322088	NM_014225.5	142	aCc/aAc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212587155	212587155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	216	416	0	ENST00000342788.4:c.846G>C	p.Lys282Asn	p.K282N	ENST00000342788	NM_005235.2	282	aaG/aaC																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971139	21971186	+	inframe_deletion	In_Frame_Del	DEL	GGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCG	GGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCG	-			P-0028657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	112	448	0	ENST00000304494.5:c.172_219del	p.Arg58_Ala73del	p.R58_A73del	ENST00000304494	NM_000077.4	58	CGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCGGAGCCCAACTGCGCC/-																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971139	21971186	+	inframe_deletion	In_Frame_Del	DEL	GGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCG	GGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCG	-			P-0028657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	112	448	0	ENST00000304494.5:c.172_219del	p.Arg58_Ala73del	p.R58_A73del	ENST00000304494	NM_000077.4	58	CGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCGGAGCCCAACTGCGCC/-																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971139	21971186	+	inframe_deletion	In_Frame_Del	DEL	GGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCG	GGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCG	-			P-0028657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	112	448	0	ENST00000304494.5:c.172_219del	p.Arg58_Ala73del	p.R58_A73del	ENST00000304494	NM_000077.4	58	CGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCGGAGCCCAACTGCGCC/-																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857569	9857569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	54	326	0	ENST00000330684.3:c.3832C>A	p.Gln1278Lys	p.Q1278K	ENST00000330684	NM_001134407.1	1278	Caa/Aaa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602788	10602788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	85	638	0	ENST00000171111.5:c.790G>T	p.Val264Phe	p.V264F	ENST00000171111	NM_203500.1	264	Gtc/Ttc																																																																														
RRAGC	0	MSKCC	GRCh37	1	39318145	39318145	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	61	386	0	ENST00000373001.3:c.657T>A	p.Ser219Arg	p.S219R	ENST00000373001	NM_022157.3	219	agT/agA																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680776	88680776	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	110	448	0	ENST00000360948.2:c.481T>G	p.Phe161Val	p.F161V	ENST00000360948	NM_001012338.2	161	Ttt/Gtt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680785	88680785	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	109	423	0	ENST00000360948.2:c.472G>T	p.Glu158Ter	p.E158*	ENST00000360948	NM_001012338.2	158	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7574001	7574001	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	173	604	0	ENST00000269305.4:c.1026del	p.Glu343SerfsTer2	p.E343Sfs*2	ENST00000269305	NM_001126112.2	342	cgA/cg																																																																														
GNAS	0	MSKCC	GRCh37	20	57484266	57484266	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	44	291	0	ENST00000371085.3:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000371085	NM_000516.4	194	Gat/Tat																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164761	36164761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	77	577	0	ENST00000300305.3:c.1114G>A	p.Gly372Ser	p.G372S	ENST00000300305		372	Ggc/Agc																																																																														
PRDM1	0	MSKCC	GRCh37	6	106552845	106552845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	100	591	1	ENST00000369096.4:c.810C>A	p.Asn270Lys	p.N270K	ENST00000369096	NM_001198.3	270	aaC/aaA																																																																														
CDK6	0	MSKCC	GRCh37	7	92462536	92462536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	64	484	0	ENST00000265734.4:c.102G>T	p.Lys34Asn	p.K34N	ENST00000265734	NM_001259.6	34	aaG/aaT																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399987	139399987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	29	553	0	ENST00000277541.6:c.4361G>T	p.Cys1454Phe	p.C1454F	ENST00000277541	NM_017617.3	1454	tGc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	74	311	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	162	263	0	ENST00000257430.4:c.2544dupA	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	584	423	0	ENST00000263967.3:c.1635G>C	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaC																																																																														
TP53	0	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	301	452	0	ENST00000269305.4:c.569C>G	p.Pro190Arg	p.P190R	ENST00000269305	NM_001126112.2	190	cCt/cGt																																																																														
ELF3	0	MSKCC	GRCh37	1	201981564	201981564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	562	548	0	ENST00000359651.3:c.478G>A	p.Asp160Asn	p.D160N	ENST00000359651		160	Gac/Aac																																																																														
STAT5B	0	MSKCC	GRCh37	17	40354795	40354795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	283	423	0	ENST00000293328.3:c.2109G>T	p.Gln703His	p.Q703H	ENST00000293328	NM_012448.3	703	caG/caT																																																																														
STAT3	0	MSKCC	GRCh37	17	40481618	40481618	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	323	383	0	ENST00000264657.5:c.1187T>C	p.Met396Thr	p.M396T	ENST00000264657	NM_139276.2	396	aTg/aCg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212488730	212488730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	251	320	0	ENST00000342788.4:c.2119C>A	p.Gln707Lys	p.Q707K	ENST00000342788	NM_005235.2	707	Caa/Aaa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589572	67589580	+	inframe_deletion	In_Frame_Del	DEL	AGGGAAAAA	AGGGAAAAA	-			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	139	209	0	ENST00000274335.5:c.1336_1344del	p.Gly446_Lys448del	p.G446_K448del	ENST00000274335		445	gtAGGGAAAAAa/gta																																																																														
APC	0	MSKCC	GRCh37	5	112175768	112175784	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGAAAGTACTCCAGA	ACGGAAAGTACTCCAGA	C			P-0028661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	76	209	0	ENST00000257430.4:c.4477_4493delinsC	p.Thr1493LeufsTer9	p.T1493Lfs*9	ENST00000257430	NM_000038.5	1493	ACGGAAAGTACTCCAGAt/Ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	1698	622	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578482	7578482	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	388	764	0	ENST00000269305.4:c.448del	p.Thr150HisfsTer20	p.T150Hfs*20	ENST00000269305	NM_001126112.2	150	Aca/ca																																																																														
FAM175A	0	MSKCC	GRCh37	4	84403325	84403325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	142	445	0	ENST00000321945.7:c.160G>A	p.Glu54Lys	p.E54K	ENST00000321945	NM_139076.2	54	Gaa/Aaa																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9777667	9777667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	77	649	1	ENST00000377346.4:c.1003G>A	p.Ala335Thr	p.A335T	ENST00000377346	NM_005026.3	335	Gcc/Acc																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186506997	186506997	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	33	229	0	ENST00000323963.5:c.1163T>C	p.Ile388Thr	p.I388T	ENST00000323963		388	aTt/aCt																																																																														
NBN	0	MSKCC	GRCh37	8	90967584	90967584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	532	289	0	ENST00000265433.3:c.1324A>G	p.Ser442Gly	p.S442G	ENST00000265433	NM_002485.4	442	Agt/Ggt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0028672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	40	459	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	42	220	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0028672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	25	552	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	44	411	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89693010	89693010	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0028672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	29	377	0	ENST00000371953.3:c.492+2del		p.X164_splice	ENST00000371953	NM_000314.4	164																																																																															
PTEN	0	MSKCC	GRCh37	10	89692941	89692941	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	40	568	0	ENST00000371953.3:c.428del	p.Gly143AlafsTer4	p.G143Afs*4	ENST00000371953	NM_000314.4	142	cGg/cg																																																																														
SUFU	0	MSKCC	GRCh37	10	104359298	104359298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	37	443	0	ENST00000369902.3:c.1022del	p.Pro341ArgfsTer20	p.P341Rfs*20	ENST00000369902	NM_016169.3	340	gCc/gc																																																																														
MSH6	0	MSKCC	GRCh37	2	48026963	48026963	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	44	281	0	ENST00000234420.5:c.1842del	p.Cys615ValfsTer7	p.C615Vfs*7	ENST00000234420	NM_000179.2	614	tCc/tc																																																																														
NSD1	0	MSKCC	GRCh37	5	176710828	176710828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	28	376	0	ENST00000439151.2:c.6050G>T	p.Arg2017Leu	p.R2017L	ENST00000439151	NM_022455.4	2017	cGg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0028673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	285	663	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	143	436	0	ENST00000263967.3:c.333G>C	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaC																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106535	27106535	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	216	711	0	ENST00000324856.7:c.6146G>A	p.Trp2049Ter	p.W2049*	ENST00000324856	NM_006015.4	2049	tGg/tAg																																																																														
FAT1	0	MSKCC	GRCh37	4	187541322	187541322	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	53	307	0	ENST00000441802.2:c.6418C>T	p.Gln2140Ter	p.Q2140*	ENST00000441802	NM_005245.3	2140	Caa/Taa																																																																														
SOX17	0	MSKCC	GRCh37	8	55370892	55370892	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	87	651	0	ENST00000297316.4:c.194A>C	p.Glu65Ala	p.E65A	ENST00000297316	NM_022454.3	65	gAg/gCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	71	458	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RB1	0	MSKCC	GRCh37	13	49030343	49030343	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	59	242	0	ENST00000267163.4:c.1818T>A	p.Tyr606Ter	p.Y606*	ENST00000267163	NM_000321.2	606	taT/taA																																																																														
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0028677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	123	561	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	312	416	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	713	386	3	ENST00000269305.4:c.559+2T>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
ERBB4	0	MSKCC	GRCh37	2	212248726	212248726	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	62	308	0	ENST00000342788.4:c.3541C>G	p.Gln1181Glu	p.Q1181E	ENST00000342788	NM_005235.2	1181	Caa/Gaa																																																																														
IL7R	0	MSKCC	GRCh37	5	35867471	35867471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	45	316	0	ENST00000303115.3:c.285G>C	p.Glu95Asp	p.E95D	ENST00000303115	NM_002185.3	95	gaG/gaC																																																																														
VEGFA	0	MSKCC	GRCh37	6	43745213	43745213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	69	379	1	ENST00000523873.1:c.126G>T	p.Lys42Asn	p.K42N	ENST00000523873		42	aaG/aaT																																																																														
KMT2C	0	MSKCC	GRCh37	7	152055730	152055730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	93	469	0	ENST00000262189.6:c.192del	p.Asp65MetfsTer40	p.D65Mfs*40	ENST00000262189	NM_170606.2	64	gaA/ga																																																																														
RBM10	0	MSKCC	GRCh37	X	47044970	47044970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	653	610	0	ENST00000329236.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000329236	NM_001204466.1	688	Cgc/Tgc																																																																														
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0028684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	201	688	1	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
CDH1	0	MSKCC	GRCh37	16	68846130	68846131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	223	673	1	ENST00000261769.5:c.1102dup	p.Thr368AsnfsTer4	p.T368Nfs*4	ENST00000261769	NM_004360.3	367	-/A																																																																														
KIT	0	MSKCC	GRCh37	4	55589770	55589771	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0028684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	88	374	0	ENST00000288135.5:c.1253dup	p.Tyr418Ter	p.Y418*	ENST00000288135	NM_000222.2	418	tac/tAac																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177771	56177772	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0028684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	62	295	0	ENST00000399503.3:c.2745_2746del	p.Ala917TyrfsTer12	p.A917Yfs*12	ENST00000399503	NM_005921.1	915	tTA/t																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	402	407	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46725681	46725681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	174	526	0	ENST00000371975.4:c.317G>C	p.Arg106Pro	p.R106P	ENST00000371975	NM_003579.3	106	cGc/cCc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176132097	176132097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1322	285	512	0	ENST00000367669.3:c.670G>C	p.Asp224His	p.D224H	ENST00000367669	NM_022457.5	224	Gat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7579813	7579843	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGCCCTTCCAATGGATCCACTCACAGTTT	CCTGCCCTTCCAATGGATCCACTCACAGTTT	-			P-0028689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	150	587	0	ENST00000269305.4:c.70_74+26del		p.X24_splice	ENST00000269305	NM_001126112.2	24																																																																															
RNF43	0	MSKCC	GRCh37	17	56492686	56492686	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0028689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	212	391	0	ENST00000407977.2:c.252+1G>T		p.X84_splice	ENST00000407977		84																																																																															
TMEM127	0	MSKCC	GRCh37	2	96931098	96931098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	26	53	0	ENST00000258439.3:c.22G>A	p.Gly8Arg	p.G8R	ENST00000258439	NM_001193304.2	8	Ggg/Agg																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	137	671	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89711960	89711962	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0028695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	47	534	0	ENST00000371953.3:c.582_584delGTT	p.Leu194del	p.L194del	ENST00000371953	NM_000314.4	193	cTGTtg/ctg																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149510216	149510216	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	35	602	0	ENST00000261799.4:c.1253G>C	p.Arg418Pro	p.R418P	ENST00000261799	NM_002609.3	418	cGa/cCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	22	455	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MET	0	MSKCC	GRCh37	7	116422150	116422150	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0028698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	31	431	0	ENST00000397752.3:c.3631A>G	p.Met1211Val	p.M1211V	ENST00000397752	NM_000245.2	1211	Atg/Gtg																																																																														
RBM10	0	MSKCC	GRCh37	X	47041652	47041653	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0028698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	32	399	0	ENST00000329236.7:c.1644_1645del	p.His548GlnfsTer46	p.H548Qfs*46	ENST00000329236	NM_001204466.1	548	cAT/c																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	37	673	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55242467	55242487	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATCTC	AATTAAGAGAAGCAACATCTC	TCT			P-0028699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	26	595	2	ENST00000275493.2:c.2237_2257delinsTCT	p.Glu746_Pro753delinsValSer	p.E746_P753delinsVS	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCTCcg/gTCTcg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	76	747	1	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50455097	50455097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	57	434	0	ENST00000331340.3:c.644C>T	p.Ser215Phe	p.S215F	ENST00000331340	NM_006060.4	215	tCt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	161	539	0	ENST00000269305.4:c.695T>C	p.Ile232Thr	p.I232T	ENST00000269305	NM_001126112.2	232	aTc/aCc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15935636	15935636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	44	307	0	ENST00000268712.3:c.7297G>A	p.Glu2433Lys	p.E2433K	ENST00000268712	NM_006311.3	2433	Gag/Aag																																																																														
EPHA7	0	MSKCC	GRCh37	6	94128989	94128989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	64	374	0	ENST00000369303.4:c.71C>T	p.Thr24Ile	p.T24I	ENST00000369303	NM_004440.3	24	aCa/aTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	37	454	0				ENST00000310581	NM_198253.2																																																																																
SESN2	0	MSKCC	GRCh37	1	28598345	28598366	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTGGCCAGCTCCTGGCGCCA	CCTTGGCCAGCTCCTGGCGCCA	-			P-0028705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	74	707	0	ENST00000253063.3:c.318_339del	p.Leu107ThrfsTer16	p.L107Tfs*16	ENST00000253063	NM_031459.4	106	cCCTTGGCCAGCTCCTGGCGCCAc/cc																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41750420	41750420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	25	502	1	ENST00000226382.2:c.208C>T	p.Leu70Phe	p.L70F	ENST00000226382	NM_003924.3	70	Ctc/Ttc																																																																														
KDR	0	MSKCC	GRCh37	4	55971146	55971146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	28	567	1	ENST00000263923.4:c.1651C>A	p.Pro551Thr	p.P551T	ENST00000263923	NM_002253.2	551	Cct/Act																																																																														
IL7R	0	MSKCC	GRCh37	5	35875640	35875640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	38	446	0	ENST00000303115.3:c.827T>C	p.Leu276Pro	p.L276P	ENST00000303115	NM_002185.3	276	cTc/cCc																																																																														
APC	0	MSKCC	GRCh37	5	112179488	112179488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	21	486	0	ENST00000257430.4:c.8197C>G	p.Gln2733Glu	p.Q2733E	ENST00000257430	NM_000038.5	2733	Caa/Gaa																																																																														
PREX2	0	MSKCC	GRCh37	8	69002874	69002874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	53	357	0	ENST00000288368.4:c.2174T>A	p.Ile725Asn	p.I725N	ENST00000288368	NM_024870.2	725	aTc/aAc																																																																														
BLM	0	MSKCC	GRCh37	15	91352421	91352423	+	frameshift_variant	Frame_Shift_Del	DEL	ACA	ACA	G			P-0028705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	36	438	0	ENST00000355112.3:c.3806_3808delinsG	p.Asp1269GlyfsTer18	p.D1269Gfs*18	ENST00000355112	NM_000057.2	1269	gACAaa/gGaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	190	497	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	208	781	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244401	46244401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	149	637	0	ENST00000334344.6:c.2495C>T	p.Ser832Leu	p.S832L	ENST00000334344	NM_152641.2	832	tCa/tTa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974683	21974684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0028708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	263	483	0	ENST00000304494.5:c.142_143dup	p.Ile49ArgfsTer5	p.I49Rfs*5	ENST00000304494	NM_000077.4	48	ccg/ccCCg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974683	21974684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0028708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	263	483	0	ENST00000304494.5:c.142_143dup	p.Ile49ArgfsTer5	p.I49Rfs*5	ENST00000304494	NM_000077.4	48	ccg/ccCCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	19	708	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	80	546	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	71	247	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	92	371	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916644	178916644	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	85	421	0	ENST00000263967.3:c.31T>G	p.Trp11Gly	p.W11G	ENST00000263967	NM_006218.2	11	Tgg/Ggg																																																																														
APC	0	MSKCC	GRCh37	5	112175251	112175255	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCG	GAGCG	-			P-0028710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	66	246	0	ENST00000257430.4:c.3960_3964del	p.Glu1322SerfsTer8	p.E1322Sfs*8	ENST00000257430	NM_000038.5	1320	gtGAGCGaa/gtaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	193	545	1	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17743021	17743021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	124	673	0	ENST00000250003.3:c.929G>T	p.Gly310Val	p.G310V	ENST00000250003	NM_002478.4	310	gGt/gTt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212570070	212570070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	74	387	0	ENST00000342788.4:c.1171G>T	p.Val391Phe	p.V391F	ENST00000342788	NM_005235.2	391	Gtc/Ttc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105973	27105973	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	71	457	0	ENST00000324856.7:c.5584A>T	p.Lys1862Ter	p.K1862*	ENST00000324856	NM_006015.4	1862	Aag/Tag																																																																														
TET1	0	MSKCC	GRCh37	10	70332390	70332390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	154	525	0	ENST00000373644.4:c.295T>A	p.Cys99Ser	p.C99S	ENST00000373644	NM_030625.2	99	Tgc/Agc																																																																														
SDHD	0	MSKCC	GRCh37	11	111958623	111958623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	132	355	0	ENST00000375549.3:c.95C>T	p.Ser32Leu	p.S32L	ENST00000375549	NM_003002.3	32	tCa/tTa																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50484327	50484328	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	111	460	3	ENST00000394963.4:c.1087_1088delinsAT	p.Ala363Ile	p.A363I	ENST00000394963	NM_003076.4	363	GCc/ATc																																																																														
IRS2	0	MSKCC	GRCh37	13	110434783	110434783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	165	746	1	ENST00000375856.3:c.3618G>T	p.Gln1206His	p.Q1206H	ENST00000375856	NM_003749.2	1206	caG/caT																																																																														
FANCA	0	MSKCC	GRCh37	16	89846317	89846317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201323171		P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	133	644	0	ENST00000389301.3:c.1675G>A	p.Glu559Lys	p.E559K	ENST00000389301	NM_000135.2	559	Gag/Aag																																																																														
RARA	0	MSKCC	GRCh37	17	38510593	38510593	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	131	652	0	ENST00000254066.5:c.847A>C	p.Thr283Pro	p.T283P	ENST00000254066	NM_000964.3	283	Acc/Ccc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78796039	78796039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	167	598	0	ENST00000306801.3:c.929G>A	p.Gly310Asp	p.G310D	ENST00000306801	NM_020761.2	310	gGt/gAt																																																																														
BABAM1	0	MSKCC	GRCh37	19	17389793	17389793	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	222	836	0	ENST00000359435.4:c.926G>T	p.Ser309Ile	p.S309I	ENST00000359435	NM_001033549.1	309	aGc/aTc																																																																														
ERCC3	0	MSKCC	GRCh37	2	128030511	128030511	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	113	533	0	ENST00000285398.2:c.1757A>C	p.Gln586Pro	p.Q586P	ENST00000285398	NM_000122.1	586	cAg/cCg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566833	212566833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	51	287	0	ENST00000342788.4:c.1348C>A	p.Leu450Met	p.L450M	ENST00000342788	NM_005235.2	450	Ctg/Atg																																																																														
CUL3	0	MSKCC	GRCh37	2	225368527	225368527	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	16	206	0	ENST00000264414.4:c.1219G>T	p.Glu407Ter	p.E407*	ENST00000264414	NM_003590.4	407	Gaa/Taa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790084	40790085	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	116	575	0	ENST00000373198.4:c.2646_2647delinsAT	p.Asp882_Gln883delinsGluTer	p.D882_Q883delinsE*	ENST00000373198	NM_133170.3	882	gaCCag/gaATag																																																																														
SHQ1	0	MSKCC	GRCh37	3	72861859	72861859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	145	560	0	ENST00000325599.8:c.1023G>A	p.Met341Ile	p.M341I	ENST00000325599	NM_018130.2	341	atG/atA																																																																														
GATA2	0	MSKCC	GRCh37	3	128205121	128205121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	127	557	0	ENST00000341105.2:c.320C>A	p.Ala107Asp	p.A107D	ENST00000341105	NM_032638.4	107	gCc/gAc																																																																														
BCL6	0	MSKCC	GRCh37	3	187447565	187447565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	83	542	0	ENST00000232014.4:c.628G>T	p.Asp210Tyr	p.D210Y	ENST00000232014	NM_001130845.1	210	Gat/Tat																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55155245	55155245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	98	505	0	ENST00000257290.5:c.2844G>T	p.Glu948Asp	p.E948D	ENST00000257290	NM_006206.4	948	gaG/gaT																																																																														
ARID1B	0	MSKCC	GRCh37	6	157405809	157405809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	117	334	0	ENST00000346085.5:c.2051C>T	p.Ser684Phe	p.S684F	ENST00000346085	NM_020732.3	684	tCc/tTc																																																																														
SYK	0	MSKCC	GRCh37	9	93640032	93640032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	50	267	0	ENST00000375746.1:c.1361G>A	p.Gly454Asp	p.G454D	ENST00000375746	NM_001174167.1	454	gGt/gAt																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101911461	101911461	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0028712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	46	232	0	ENST00000374994.4:c.1387-1G>T		p.X463_splice	ENST00000374994	NM_004612.2	463																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0028715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	342	590	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916940	178916948	+	inframe_deletion	In_Frame_Del	DEL	AGAAAAGAT	AGAAAAGAT	-			P-0028715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	74	383	0	ENST00000263967.3:c.327_335del	p.Glu109_Ile112delinsAsp	p.E109_I112delinsD	ENST00000263967	NM_006218.2	109	gaAGAAAAGATc/gac																																																																														
BRIP1	0	MSKCC	GRCh37	17	59885995	59885995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	140	437	0	ENST00000259008.2:c.751C>T	p.Arg251Cys	p.R251C	ENST00000259008	NM_032043.2	251	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	148	576	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	136	548	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59760836	59760836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	146	534	0	ENST00000259008.2:c.3571A>G	p.Ile1191Val	p.I1191V	ENST00000259008	NM_032043.2	1191	Ata/Gta																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	583	498	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
GATA3	0	MSKCC	GRCh37	10	8111554	8111554	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	278	502	0	ENST00000346208.3:c.1040T>G	p.Leu347Arg	p.L347R	ENST00000346208		347	cTt/cGt																																																																														
FAT1	0	MSKCC	GRCh37	4	187542785	187542785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	29	377	0	ENST00000441802.2:c.4955C>T	p.Ser1652Phe	p.S1652F	ENST00000441802	NM_005245.3	1652	tCt/tTt																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852054	63852057	+	frameshift_variant	Frame_Shift_Del	DEL	CAGC	CAGC	-			P-0028721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	266	497	0	ENST00000279873.7:c.2835_2838del	p.Ser945ArgfsTer15	p.S945Rfs*15	ENST00000279873	NM_032199.2	944	ggCAGC/gg																																																																														
KDM5A	0	MSKCC	GRCh37	12	402127	402127	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	276	474	0	ENST00000399788.2:c.4664T>G	p.Leu1555Arg	p.L1555R	ENST00000399788	NM_001042603.1	1555	cTa/cGa																																																																														
LATS2	0	MSKCC	GRCh37	13	21555625	21555625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	216	527	0	ENST00000382592.4:c.2645C>T	p.Pro882Leu	p.P882L	ENST00000382592	NM_014572.2	882	cCc/cTc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273261	18273261	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	84	507	0	ENST00000222254.8:c.1054T>G	p.Phe352Val	p.F352V	ENST00000222254	NM_005027.3	352	Ttc/Gtc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026807	71026807	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	111	250	0	ENST00000318789.4:c.1415C>G	p.Ser472Cys	p.S472C	ENST00000318789	NM_032682.5	472	tCt/tGt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929331	44929331	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	319	652	0	ENST00000377967.4:c.2431A>T	p.Thr811Ser	p.T811S	ENST00000377967	NM_021140.2	811	Act/Tct																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0028722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	62	383	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
JAK3	0	MSKCC	GRCh37	19	17950393	17950393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	155	626	1	ENST00000458235.1:c.1334G>A	p.Arg445Gln	p.R445Q	ENST00000458235	NM_000215.3	445	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	325	589	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32168682	32168682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	333	598	0	ENST00000375023.3:c.4241C>T	p.Ala1414Val	p.A1414V	ENST00000375023	NM_004557.3	1414	gCg/gTg																																																																														
ATM	0	MSKCC	GRCh37	11	108099978	108099978	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	147	307	0	ENST00000278616.4:c.259C>T	p.Gln87Ter	p.Q87*	ENST00000278616	NM_000051.3	87	Caa/Taa																																																																														
AXL	0	MSKCC	GRCh37	19	41727899	41727899	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	294	668	0	ENST00000301178.4:c.524A>C	p.Gln175Pro	p.Q175P	ENST00000301178	NM_021913.4	175	cAg/cCg																																																																														
ERG	0	MSKCC	GRCh37	21	39755839	39755839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	149	215	0	ENST00000288319.7:c.926G>T	p.Gly309Val	p.G309V	ENST00000288319	NM_182918.3	309	gGc/gTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	77	385	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MED12	0	MSKCC	GRCh37	X	70361160	70361160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	27	296	0	ENST00000374080.3:c.6348C>A	p.His2116Gln	p.H2116Q	ENST00000374080		2116	caC/caA																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	151	557	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	225	294	0	ENST00000349496.5:c.95A>C	p.Asp32Ala	p.D32A	ENST00000349496	NM_001904.3	32	gAc/gCc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969369	44969369	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	75	240	0	ENST00000377967.4:c.4051C>T	p.Arg1351Ter	p.R1351*	ENST00000377967	NM_021140.2	1351	Cga/Tga																																																																														
TET1	0	MSKCC	GRCh37	10	70451223	70451223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	133	568	0	ENST00000373644.4:c.6063G>C	p.Glu2021Asp	p.E2021D	ENST00000373644	NM_030625.2	2021	gaG/gaC																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164723	36164724	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			P-0028741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	41	643	0	ENST00000300305.3:c.1149_1151dup	p.Pro384dup	p.P384dup	ENST00000300305		384	ccc/ccGCCc																																																																														
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	92	424	0	ENST00000288135.5:c.1676T>C	p.Val559Ala	p.V559A	ENST00000288135	NM_000222.2	559	gTt/gCt																																																																														
RARA	0	MSKCC	GRCh37	17	38487559	38487559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	88	588	1	ENST00000254066.5:c.89C>T	p.Pro30Leu	p.P30L	ENST00000254066	NM_000964.3	30	cCt/cTt																																																																														
RAD54L	0	MSKCC	GRCh37	1	46714262	46714262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	98	358	0	ENST00000371975.4:c.82G>T	p.Gly28Cys	p.G28C	ENST00000371975	NM_003579.3	28	Ggc/Tgc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515263	103515263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	68	330	0	ENST00000355739.4:c.1764C>A	p.Ser588Arg	p.S588R	ENST00000355739	NM_000123.3	588	agC/agA																																																																														
IDH2	0	MSKCC	GRCh37	15	90631837	90631837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	123	431	0	ENST00000330062.3:c.516G>T	p.Arg172Ser	p.R172S	ENST00000330062	NM_002168.2	172	agG/agT																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138572	11138572	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	116	532	0	ENST00000344626.4:c.3328A>G	p.Thr1110Ala	p.T1110A	ENST00000344626	NM_003072.3	1110	Acc/Gcc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52719125	52719125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	129	528	0	ENST00000322088.6:c.901G>A	p.Ala301Thr	p.A301T	ENST00000322088	NM_014225.5	301	Gca/Aca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	152	350	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87570377	87570377	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	139	552	1	ENST00000277120.3:c.2117T>C	p.Val706Ala	p.V706A	ENST00000277120		706	gTg/gCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	78	427	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	51	556	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	51	556	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	51	556	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	92	664	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
GATA2	0	MSKCC	GRCh37	3	128205070	128205070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	80	660	1	ENST00000341105.2:c.371C>T	p.Thr124Met	p.T124M	ENST00000341105	NM_032638.4	124	aCg/aTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151836833	151836841	+	inframe_deletion	In_Frame_Del	DEL	ATGGTGTGT	ATGGTGTGT	-			P-0028744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	40	518	0	ENST00000262189.6:c.14379_14387del	p.His4794_Met4796del	p.H4794_M4796del	ENST00000262189	NM_170606.2	4793	aaACACACCATg/aag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11129631	11129631	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0028745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	107	551	0	ENST00000344626.4:c.2439-2A>G		p.X813_splice	ENST00000344626	NM_003072.3	813																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0028746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	105	514	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TAP1	0	MSKCC	GRCh37	6	32813492	32813492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	39	588	0	ENST00000354258.4:c.2291G>A	p.Ser764Asn	p.S764N	ENST00000354258	NM_000593.5	764	aGc/aAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	187	543	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692887	89692887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	303	263	0	ENST00000371953.3:c.371G>A	p.Cys124Tyr	p.C124Y	ENST00000371953	NM_000314.4	124	tGt/tAt																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185161405	185161405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	134	387	0	ENST00000265026.3:c.832C>T	p.Arg278Cys	p.R278C	ENST00000265026	NM_004721.4	278	Cgt/Tgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432095	49432095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	369	574	0	ENST00000301067.7:c.9044G>A	p.Gly3015Asp	p.G3015D	ENST00000301067	NM_003482.3	3015	gGt/gAt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15974740	15974740	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	113	360	0	ENST00000268712.3:c.4135G>C	p.Glu1379Gln	p.E1379Q	ENST00000268712	NM_006311.3	1379	Gag/Cag																																																																														
TEK	0	MSKCC	GRCh37	9	27157838	27157838	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	113	366	0	ENST00000380036.4:c.62A>G	p.Glu21Gly	p.E21G	ENST00000380036	NM_000459.3	21	gAa/gGa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52595880	52595881	+	frameshift_variant	Frame_Shift_Ins	INS	AA	AA	CAG			P-0028751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	166	527	0	ENST00000394830.3:c.4034_4035delinsCTG	p.Ile1345ThrfsTer25	p.I1345Tfs*25	ENST00000394830	NM_018313.4	1345	aTT/aCTG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	492	532	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	221	413	3	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932136	36932136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	184	524	0	ENST00000361632.4:c.2333C>T	p.Ala778Val	p.A778V	ENST00000361632		778	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7576991	7577353	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAG	TCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAG	-			P-0028754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	248	536	2	ENST00000269305.4:c.782+146_919+28del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
XPO1	0	MSKCC	GRCh37	2	61710126	61710126	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	50	428	0	ENST00000401558.2:c.2778C>G	p.Ile926Met	p.I926M	ENST00000401558	NM_003400.3	926	atC/atG																																																																														
APC	0	MSKCC	GRCh37	5	112175828	112175829	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0028754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	121	298	3	ENST00000257430.4:c.4538_4539del	p.Glu1513AlafsTer19	p.E1513Afs*19	ENST00000257430	NM_000038.5	1513	GAg/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	115	488	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	112	406	0	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259153	36259153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	116	567	0	ENST00000300305.3:c.338C>T	p.Pro113Leu	p.P113L	ENST00000300305		113	cCc/cTc																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	38	295	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252862	36252862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	90	325	0	ENST00000300305.3:c.500G>A	p.Ser167Asn	p.S167N	ENST00000300305		167	aGt/aAt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56183342	56183342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	92	348	0	ENST00000399503.3:c.4252C>T	p.Pro1418Ser	p.P1418S	ENST00000399503	NM_005921.1	1418	Cct/Tct																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878416	151878416	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	130	681	1	ENST00000262189.6:c.6529C>T	p.Gln2177Ter	p.Q2177*	ENST00000262189	NM_170606.2	2177	Cag/Tag																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	27	403	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	0	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	143	245	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920437	114920437	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	244	543	1	ENST00000543371.1:c.1378T>C	p.Cys460Arg	p.C460R	ENST00000543371	NM_001198531.1	460	Tgc/Cgc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41275717	41275717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	170	534	0	ENST00000349496.5:c.1612C>A	p.Gln538Lys	p.Q538K	ENST00000349496	NM_001904.3	538	Cag/Aag																																																																														
RB1	0	MSKCC	GRCh37	13	49047500	49047500	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	43	392	0	ENST00000267163.4:c.2494T>G	p.Leu832Val	p.L832V	ENST00000267163	NM_000321.2	832	Tta/Gta																																																																														
SLX4	0	MSKCC	GRCh37	16	3656648	3656648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	283	824	2	ENST00000294008.3:c.587C>T	p.Ala196Val	p.A196V	ENST00000294008	NM_032444.2	196	gCa/gTa																																																																														
TP53	0	MSKCC	GRCh37	17	7579538	7579539	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TATCG			P-0028759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	361	676	0	ENST00000269305.4:c.144_148dup	p.Ile50ThrfsTer75	p.I50Tfs*75	ENST00000269305	NM_001126112.2	50	att/aCGATAtt																																																																														
BRD4	0	MSKCC	GRCh37	19	15376319	15376319	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1332	84	830	0	ENST00000263377.2:c.695T>G	p.Leu232Arg	p.L232R	ENST00000263377	NM_058243.2	232	cTc/cGc																																																																														
MSH3	0	MSKCC	GRCh37	5	80109497	80109497	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	66	650	1	ENST00000265081.6:c.2750A>T	p.Gln917Leu	p.Q917L	ENST00000265081	NM_002439.4	917	cAg/cTg																																																																														
MEN1	0	MSKCC	GRCh37	11	64577479	64577479	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	183	574	1	ENST00000337652.1:c.103del	p.Val35CysfsTer84	p.V35Cfs*84	ENST00000337652	NM_130803.2	35	Gtg/tg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	46	325	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	195	634	0	ENST00000269305.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000269305	NM_001126112.2	337	cGc/cAc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87322770	87322770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	130	469	0	ENST00000277120.3:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000277120		124	cGa/cAa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100041	157100055	+	inframe_deletion	In_Frame_Del	DEL	AGGAGGAGCAGGAGC	AGGAGGAGCAGGAGC	-			P-0028761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	12	80	2	ENST00000346085.5:c.993_1007delAGGAGGAGCAGGAGC	p.Gly333_Gly337del	p.G333_G337del	ENST00000346085	NM_020732.3	326	ggAGGAGGAGCAGGAGCa/gga																																																																														
TP53	0	MSKCC	GRCh37	17	7574000	7574013	+	frameshift_variant	Frame_Shift_Del	DEL	CTCGGAACATCTCG	CTCGGAACATCTCG	-			P-0028761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	326	706	1	ENST00000269305.4:c.1014_1027del	p.Phe338LeufsTer4	p.F338Lfs*4	ENST00000269305	NM_001126112.2	338	ttCGAGATGTTCCGAGag/ttag																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554654	63554654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	131	518	0	ENST00000307078.5:c.85G>A	p.Glu29Lys	p.E29K	ENST00000307078	NM_004655.3	29	Gaa/Aaa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	238	389	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	344	409	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	117	239	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0028772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	124	279	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
AMER1	0	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	383	563	1	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486254	8486254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028773-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			14	270	280	0	ENST00000356435.5:c.2563G>T	p.Gly855Cys	p.G855C	ENST00000356435		855	Ggc/Tgc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55144144	55144144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028773-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	233	474	0	ENST00000257290.5:c.1973T>C	p.Val658Ala	p.V658A	ENST00000257290	NM_006206.4	658	gTa/gCa																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55152104	55152104	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121908588		P-0028773-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			17	657	554	0	ENST00000257290.5:c.2536G>T	p.Asp846Tyr	p.D846Y	ENST00000257290	NM_006206.4	846	Gat/Tat																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	120	242	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
MPL	0	MSKCC	GRCh37	1	43812574	43812574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200454070		P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	146	359	2	ENST00000372470.3:c.1277G>A	p.Arg426Gln	p.R426Q	ENST00000372470	NM_005373.2	426	cGa/cAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89624297	89624297	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	114	350	2	ENST00000371953.3:c.71A>G	p.Asp24Gly	p.D24G	ENST00000371953	NM_000314.4	24	gAc/gGc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	106	357	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	96	200	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
SESN3	0	MSKCC	GRCh37	11	94923020	94923020	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	17	446	0	ENST00000536441.1:c.448C>T	p.Gln150Ter	p.Q150*	ENST00000536441	NM_144665.3	150	Caa/Taa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	181	471	6	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
FLT1	0	MSKCC	GRCh37	13	29001395	29001395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	24	262	0	ENST00000282397.4:c.1337T>C	p.Leu446Pro	p.L446P	ENST00000282397	NM_002019.4	446	cTg/cCg																																																																														
RB1	0	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	36	309	1	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43705513	43705514	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	176	398	0	ENST00000382044.4:c.5108_5109del	p.Glu1703ValfsTer6	p.E1703Vfs*6	ENST00000382044	NM_001141980.1	1703	gAG/g																																																																														
FLCN	0	MSKCC	GRCh37	17	17119709	17119710	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	100	260	0	ENST00000285071.4:c.1284_1285del	p.His429ArgfsTer26	p.H429Rfs*26	ENST00000285071	NM_144997.5	428	ccCCac/ccac																																																																														
PPM1D	0	MSKCC	GRCh37	17	58700941	58700941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	35	377	0	ENST00000305921.3:c.532G>A	p.Val178Ile	p.V178I	ENST00000305921	NM_003620.3	178	Gtc/Atc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5245820	5245820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	46	445	1	ENST00000357368.4:c.955G>A	p.Val319Ile	p.V319I	ENST00000357368	NM_002850.3	319	Gtc/Atc																																																																														
BRD4	0	MSKCC	GRCh37	19	15354008	15354008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	37	153	0	ENST00000263377.2:c.2872del	p.Leu958CysfsTer110	p.L958Cfs*110	ENST00000263377	NM_058243.2	958	Ctg/tg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	97	322	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																														
IRS1	0	MSKCC	GRCh37	2	227662809	227662809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	173	398	1	ENST00000305123.5:c.646C>T	p.His216Tyr	p.H216Y	ENST00000305123	NM_005544.2	216	Cac/Tac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	69	185	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1978262	1978262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	204	493	4	ENST00000382891.5:c.3682C>T	p.Arg1228Cys	p.R1228C	ENST00000382891	NM_133335.3	1228	Cgc/Tgc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143007331	143007332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	41	273	0	ENST00000262992.4:c.2452dupA	p.Arg818LysfsTer26	p.R818Kfs*26	ENST00000262992	NM_001101669.1	818	aga/aAga																																																																														
SMO	0	MSKCC	GRCh37	7	128851941	128851943	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	29	397	0	ENST00000249373.3:c.2021_2023del	p.Lys674del	p.K674del	ENST00000249373	NM_005631.4	671	cgGAAg/cgg																																																																														
TEK	0	MSKCC	GRCh37	9	27192526	27192526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	32	433	0	ENST00000380036.4:c.1529G>A	p.Arg510Gln	p.R510Q	ENST00000380036	NM_000459.3	510	cGg/cAg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	133	332	5	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	141	312	3	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
NCOA3	0	MSKCC	GRCh37	20	46279814	46279815	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0028774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	45	258	1	ENST00000371998.3:c.3759_3761dup	p.Gln1276dup	p.Q1276dup	ENST00000371998		1276	atg/atGCAg																																																																														
TP53	0	MSKCC	GRCh37	17	7576865	7576865	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0028775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	50	458	0	ENST00000269305.4:c.981T>G	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taT/taG																																																																														
TET1	0	MSKCC	GRCh37	10	70333670	70333670	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	27	308	0	ENST00000373644.4:c.1575T>A	p.His525Gln	p.H525Q	ENST00000373644	NM_030625.2	525	caT/caA																																																																														
CDK12	0	MSKCC	GRCh37	17	37673698	37673698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	54	356	0	ENST00000447079.4:c.2852T>C	p.Leu951Pro	p.L951P	ENST00000447079	NM_015083.1	951	cTt/cCt																																																																														
TP53	0	MSKCC	GRCh37	17	7578254	7578254	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	212	404	0	ENST00000269305.4:c.595G>T	p.Gly199Ter	p.G199*	ENST00000269305	NM_001126112.2	199	Gga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	63	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	75	312	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	75	312	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	75	312	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390072	89390072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	27	157	0	ENST00000336596.2:c.821G>A	p.Arg274Gln	p.R274Q	ENST00000336596	NM_005233.5	274	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0028779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	92	390	1	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																														
SRC	0	MSKCC	GRCh37	20	36030038	36030038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	88	382	0	ENST00000358208.4:c.1073G>A	p.Gly358Asp	p.G358D	ENST00000358208		358	gGc/gAc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138403632	138403632	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs74701669		P-0028784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	319	443	0	ENST00000289153.2:c.2150A>G	p.Asn717Ser	p.N717S	ENST00000289153	NM_006219.2	717	aAt/aGt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16012100	16012100	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	317	430	0	ENST00000268712.3:c.2182G>C	p.Val728Leu	p.V728L	ENST00000268712	NM_006311.3	728	Gtt/Ctt																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	469	861	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	699	593	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107136	27107137	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	250	600	0	ENST00000324856.7:c.6749_6750del	p.Glu2250ValfsTer27	p.E2250Vfs*27	ENST00000324856	NM_006015.4	2249	tcAGag/tcag																																																																														
DICER1	0	MSKCC	GRCh37	14	95570180	95570180	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150514959		P-0028787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	64	507	0	ENST00000343455.3:c.3553G>A	p.Ala1185Thr	p.A1185T	ENST00000343455	NM_177438.2	1185	Gcc/Acc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245528	153245528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	208	514	0	ENST00000281708.4:c.1663G>T	p.Val555Leu	p.V555L	ENST00000281708	NM_033632.3	555	Gtg/Ttg																																																																														
FAT1	0	MSKCC	GRCh37	4	187542152	187542152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	200	561	0	ENST00000441802.2:c.5588C>G	p.Ala1863Gly	p.A1863G	ENST00000441802	NM_005245.3	1863	gCg/gGg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151875048	151875048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	71	259	0	ENST00000262189.6:c.7490G>A	p.Arg2497His	p.R2497H	ENST00000262189	NM_170606.2	2497	cGc/cAc																																																																														
BAP1	0	MSKCC	GRCh37	3	52440334	52440334	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	322	697	0	ENST00000460680.1:c.718A>T	p.Lys240Ter	p.K240*	ENST00000460680	NM_004656.3	240	Aag/Tag																																																																														
ALK	0	MSKCC	GRCh37	2	29917716	29917716	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	220	608	0	ENST00000389048.3:c.952G>A	p.Gly318Ser	p.G318S	ENST00000389048	NM_004304.4	318	Ggc/Agc																																																																														
AR	0	MSKCC	GRCh37	X	66863241	66863241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	125	532	0	ENST00000374690.3:c.1760C>A	p.Ala587Asp	p.A587D	ENST00000374690	NM_000044.3	587	gCc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	140	956	0	ENST00000269305.4:c.401T>C	p.Phe134Ser	p.F134S	ENST00000269305	NM_001126112.2	134	tTt/tCt																																																																														
NF1	0	MSKCC	GRCh37	17	29576021	29576021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	91	576	0	ENST00000358273.4:c.3994C>G	p.Leu1332Val	p.L1332V	ENST00000358273	NM_001042492.2	1332	Ctt/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0028803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	391	735	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	230	608	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	239	465	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																														
SMAD2	0	MSKCC	GRCh37	18	45374914	45374914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	356	593	0	ENST00000262160.6:c.929G>C	p.Arg310Thr	p.R310T	ENST00000262160	NM_005901.5	310	aGg/aCg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119971	70119971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	183	336	1	ENST00000245479.2:c.973G>A	p.Ala325Thr	p.A325T	ENST00000245479	NM_000346.3	325	Gcg/Acg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266110	41266110	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	79	309	0	ENST00000349496.5:c.107A>C	p.His36Pro	p.H36P	ENST00000349496	NM_001904.3	36	cAt/cCt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857974	9857974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61758996		P-0028835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	119	438	1	ENST00000330684.3:c.3427G>A	p.Glu1143Lys	p.E1143K	ENST00000330684	NM_001134407.1	1143	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0028837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	83	735	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0028837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	10	17	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
RBM10	0	MSKCC	GRCh37	X	47041663	47041663	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	76	807	0	ENST00000329236.7:c.1657del	p.Ala553HisfsTer73	p.A553Hfs*73	ENST00000329236	NM_001204466.1	552	Ggg/gg																																																																														
MED12	0	MSKCC	GRCh37	X	70357045	70357045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	59	785	2	ENST00000374080.3:c.5560C>T	p.Arg1854Cys	p.R1854C	ENST00000374080		1854	Cgt/Tgt																																																																														
MGA	0	MSKCC	GRCh37	15	42034787	42034787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	75	458	0	ENST00000219905.7:c.4629G>C	p.Met1543Ile	p.M1543I	ENST00000219905	NM_001164273.1	1543	atG/atC																																																																														
SLX4	0	MSKCC	GRCh37	16	3640238	3640238	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	108	1071	0	ENST00000294008.3:c.3401C>A	p.Ser1134Ter	p.S1134*	ENST00000294008	NM_032444.2	1134	tCg/tAg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55161298	55161298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	18	391	2	ENST00000257290.5:c.3129G>T	p.Gln1043His	p.Q1043H	ENST00000257290	NM_006206.4	1043	caG/caT																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258968	153258969	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0028837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	18	321	0	ENST00000281708.4:c.846_847del	p.Leu283AlafsTer3	p.L283Afs*3	ENST00000281708	NM_033632.3	282	tcATtg/tctg																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839804	27839804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	114	571	0	ENST00000328488.2:c.290G>C	p.Cys97Ser	p.C97S	ENST00000328488	NM_003533.2	97	tGc/tCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	163	435	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484302	8484302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	101	464	0	ENST00000356435.5:c.3230C>A	p.Pro1077His	p.P1077H	ENST00000356435		1077	cCt/cAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089725	27089725	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	50	615	0	ENST00000324856.7:c.2681C>G	p.Thr894Ser	p.T894S	ENST00000324856	NM_006015.4	894	aCc/aGc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112268	115112268	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	22	77	0	ENST00000257566.3:c.1472C>G	p.Ala491Gly	p.A491G	ENST00000257566	NM_016569.3	491	gCg/gGg																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675139	40675139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	199	735	0	ENST00000249776.8:c.103C>G	p.Leu35Val	p.L35V	ENST00000249776	NM_033286.3	35	Cta/Gta																																																																														
NTRK3	0	MSKCC	GRCh37	15	88476259	88476259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	110	525	0	ENST00000360948.2:c.1873C>A	p.Leu625Met	p.L625M	ENST00000360948	NM_001012338.2	625	Ctg/Atg																																																																														
FAT1	0	MSKCC	GRCh37	4	187584465	187584465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	24	302	1	ENST00000441802.2:c.3568C>T	p.His1190Tyr	p.H1190Y	ENST00000441802	NM_005245.3	1190	Cat/Tat																																																																														
NSD1	0	MSKCC	GRCh37	5	176562505	176562505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	115	648	0	ENST00000439151.2:c.401A>G	p.Asn134Ser	p.N134S	ENST00000439151	NM_022455.4	134	aAc/aGc																																																																														
APC	0	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	32	169	0	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
RB1	0	MSKCC	GRCh37	13	48936995	48936995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	322	442	15	ENST00000267163.4:c.763C>T	p.Arg255Ter	p.R255*	ENST00000267163	NM_000321.2	255	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	393	593	0	ENST00000269305.4:c.799C>G	p.Arg267Gly	p.R267G	ENST00000269305	NM_001126112.2	267	Cgg/Ggg																																																																														
APC	0	MSKCC	GRCh37	5	112173470	112174424	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAATCTCATGGCAAATAGGCCTGCGAAGTACAAGGATGCCAATATTATGTCTCCTGGCTCAAGCTTGCCATCTCTTCATGTTAGGAAACAAAAAGCCCTAGAAGCAGAATTAGATGCTCAGCACTTATCAGAAACTTTTGACAATATAGACAATTTAAGTCCCAAGGCATCTCATCGTAGTAAGCAGAGACACAAGCAAAGTCTCTATGGTGATTATGTTTTTGACACCAATCGACATGATGATAATAGGTCAGACAATTTTAATACTGGCAACATGACTGTCCTTTCACCATATTTGAATACTACAGTGTTACCCAGCTCCTCTTCATCAAGAGGAAGCTTAGATAGTTCTCGTTCTGAAAAAGATAGAAGTTTGGAGAGAGAACGCGGAATTGGTCTAGGCAACTACCATCCAGCAACAGAAAATCCAGGAACTTCTTCAAAGCGAGGTTTGCAGATCTCCACCACTGCAGCCCAGATTGCCAAAGTCATGGAAGAAGTGTCAGCCATTCATACCTCTCAGGAAGACAGAAGTTCTGGGTCTACCACTGAATTACATTGTGTGACAGATGAGAGAAATGCACTTAGAAGAAGCTCTGCTGCCCATACACATTCAAACACTTACAATTTCACTAAGTCGGAAAATTCAAATAGGACATGTTCTATGCCTTATGCCAAATTAGAATACAAGAGATCTTCAAATGATAGTTTAAATAGTGTCAGTAGTAGTGATGGTTATGGTAAAAGAGGTCAAATGAAACCCTCGATTGAATCCTATTCTGAAGATGATGAAAGTAAGTTTTGCAGTTATGGTCAATACCCAGCCGACCTAGCCCATAAAATACATAGTGCAAATCATATGGATGATAATGATGGAGAACTAGATACACCAATAAATTATAGTCTTAAATATTCAGATGAGCAGTTGAACTCTGGAAGGCAAAGTCCTTCAC	AGGAATCTCATGGCAAATAGGCCTGCGAAGTACAAGGATGCCAATATTATGTCTCCTGGCTCAAGCTTGCCATCTCTTCATGTTAGGAAACAAAAAGCCCTAGAAGCAGAATTAGATGCTCAGCACTTATCAGAAACTTTTGACAATATAGACAATTTAAGTCCCAAGGCATCTCATCGTAGTAAGCAGAGACACAAGCAAAGTCTCTATGGTGATTATGTTTTTGACACCAATCGACATGATGATAATAGGTCAGACAATTTTAATACTGGCAACATGACTGTCCTTTCACCATATTTGAATACTACAGTGTTACCCAGCTCCTCTTCATCAAGAGGAAGCTTAGATAGTTCTCGTTCTGAAAAAGATAGAAGTTTGGAGAGAGAACGCGGAATTGGTCTAGGCAACTACCATCCAGCAACAGAAAATCCAGGAACTTCTTCAAAGCGAGGTTTGCAGATCTCCACCACTGCAGCCCAGATTGCCAAAGTCATGGAAGAAGTGTCAGCCATTCATACCTCTCAGGAAGACAGAAGTTCTGGGTCTACCACTGAATTACATTGTGTGACAGATGAGAGAAATGCACTTAGAAGAAGCTCTGCTGCCCATACACATTCAAACACTTACAATTTCACTAAGTCGGAAAATTCAAATAGGACATGTTCTATGCCTTATGCCAAATTAGAATACAAGAGATCTTCAAATGATAGTTTAAATAGTGTCAGTAGTAGTGATGGTTATGGTAAAAGAGGTCAAATGAAACCCTCGATTGAATCCTATTCTGAAGATGATGAAAGTAAGTTTTGCAGTTATGGTCAATACCCAGCCGACCTAGCCCATAAAATACATAGTGCAAATCATATGGATGATAATGATGGAGAACTAGATACACCAATAAATTATAGTCTTAAATATTCAGATGAGCAGTTGAACTCTGGAAGGCAAAGTCCTTCAC	-			P-0028842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	22	301	0	ENST00000257430.4:c.2181_3135del	p.Asn728MetfsTer10	p.N728Mfs*10	ENST00000257430	NM_000038.5	727	AGGAATCTCATGGCAAATAGGCCTGCGAAGTACAAGGATGCCAATATTATGTCTCCTGGCTCAAGCTTGCCATCTCTTCATGTTAGGAAACAAAAAGCCCTAGAAGCAGAATTAGATGCTCAGCACTTATCAGAAACTTTTGACAATATAGACAATTTAAGTCCCAAGGCATCTCATCGTAGTAAGCAGAGACACAAGCAAAGTCTCTATGGTGATTATGTTTTTGACACCAATCGACATGATGATAATAGGTCAGACAATTTTAATACTGGCAACATGACTGTCCTTTCACCATATTTGAATACTACAGTGTTACCCAGCTCCTCTTCATCAAGAGGAAGCTTAGATAGTTCTCGTTCTGAAAAAGATAGAAGTTTGGAGAGAGAACGCGGAATTGGTCTAGGCAACTACCATCCAGCAACAGAAAATCCAGGAACTTCTTCAAAGCGAGGTTTGCAGATCTCCACCACTGCAGCCCAGATTGCCAAAGTCATGGAAGAAGTGTCAGCCATTCATACCTCTCAGGAAGACAGAAGTTCTGGGTCTACCACTGAATTACATTGTGTGACAGATGAGAGAAATGCACTTAGAAGAAGCTCTGCTGCCCATACACATTCAAACACTTACAATTTCACTAAGTCGGAAAATTCAAATAGGACATGTTCTATGCCTTATGCCAAATTAGAATACAAGAGATCTTCAAATGATAGTTTAAATAGTGTCAGTAGTAGTGATGGTTATGGTAAAAGAGGTCAAATGAAACCCTCGATTGAATCCTATTCTGAAGATGATGAAAGTAAGTTTTGCAGTTATGGTCAATACCCAGCCGACCTAGCCCATAAAATACATAGTGCAAATCATATGGATGATAATGATGGAGAACTAGATACACCAATAAATTATAGTCTTAAATATTCAGATGAGCAGTTGAACTCTGGAAGGCAAAGTCCTTCACag/ag																																																																														
DAXX	0	MSKCC	GRCh37	6	33287955	33287955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	32	418	0	ENST00000374542.5:c.1298C>T	p.Ala433Val	p.A433V	ENST00000374542	NM_001141970.1	433	gCt/gTt																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956557	93956557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	158	334	0	ENST00000369303.4:c.2679G>T	p.Met893Ile	p.M893I	ENST00000369303	NM_004440.3	893	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	238	386	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0028858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	44	496	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	32	569	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99155432	99155432	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	27	331	0	ENST00000074304.5:c.658T>G	p.Leu220Val	p.L220V	ENST00000074304	NM_001134224.1	220	Ttg/Gtg																																																																														
NF2	0	MSKCC	GRCh37	22	30067836	30067836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	81	322	1	ENST00000338641.4:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000338641	NM_000268.3	341	Cga/Tga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0028863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	152	371	0	ENST00000274335.5:c.1746-2A>G		p.X582_splice	ENST00000274335		582																																																																															
TP53	0	MSKCC	GRCh37	17	7578426	7578427	+	missense_variant	Missense_Mutation	DNP	GT	GT	TC			P-0028863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	133	712	0	ENST00000269305.4:c.503_504delinsGA	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAC/cGA																																																																														
SOX9	0	MSKCC	GRCh37	17	70119992	70119992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	69	151	1	ENST00000245479.2:c.994G>A	p.Gly332Ser	p.G332S	ENST00000245479	NM_000346.3	332	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	322	619	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	182	401	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	431	734	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	38	380	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604703	48604703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	202	424	0	ENST00000342988.3:c.1525T>C	p.Trp509Arg	p.W509R	ENST00000342988	NM_005359.5	509	Tgg/Cgg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32944659	32944659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	201	504	0	ENST00000380152.3:c.8452G>T	p.Val2818Phe	p.V2818F	ENST00000380152		2818	Gtt/Ttt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265886	41266210	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGA	TTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGA	-			P-0028864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	74	13	0	ENST00000349496.5:c.14-125_213del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
CDK12	0	MSKCC	GRCh37	17	37618905	37618905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028865-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			791	144	637	0	ENST00000447079.4:c.581A>G	p.His194Arg	p.H194R	ENST00000447079	NM_015083.1	194	cAc/cGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	50	439	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	139	512	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP63	0	MSKCC	GRCh37	3	189612078	189612078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	120	505	0	ENST00000264731.3:c.1830C>A	p.Phe610Leu	p.F610L	ENST00000264731	NM_003722.4	610	ttC/ttA																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073852	8073852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	56	193	0	ENST00000377482.5:c.807A>G	p.Ile269Met	p.I269M	ENST00000377482	NM_018948.3	269	atA/atG																																																																														
DOT1L	0	MSKCC	GRCh37	19	2213957	2213957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	71	538	3	ENST00000398665.3:c.1769G>A	p.Arg590His	p.R590H	ENST00000398665	NM_032482.2	590	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	69	385	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226187	53226187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	99	255	1	ENST00000375401.3:c.2662C>T	p.Arg888Cys	p.R888C	ENST00000375401	NM_004187.3	888	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	90	535	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858032	9858032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	69	437	0	ENST00000330684.3:c.3369G>T	p.Glu1123Asp	p.E1123D	ENST00000330684	NM_001134407.1	1123	gaG/gaT																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971207	21971207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	39	317	0	ENST00000304494.5:c.151G>T	p.Val51Phe	p.V51F	ENST00000304494	NM_000077.4	51	Gtc/Ttc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971207	21971207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	39	317	0	ENST00000304494.5:c.151G>T	p.Val51Phe	p.V51F	ENST00000304494	NM_000077.4	51	Gtc/Ttc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971207	21971207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	39	317	0	ENST00000304494.5:c.151G>T	p.Val51Phe	p.V51F	ENST00000304494	NM_000077.4	51	Gtc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	104	397	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	127	511	0	ENST00000269305.4:c.102dupC	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521619	89521619	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	51	306	0	ENST00000336596.2:c.2696C>A	p.Ser899Ter	p.S899*	ENST00000336596	NM_005233.5	899	tCa/tAa																																																																														
EZH2	0	MSKCC	GRCh37	7	148514360	148514379	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTCATAGTAAGTGCCAAT	TTGTCATAGTAAGTGCCAAT	AGCGCCAAG			P-0028875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	68	419	2	ENST00000320356.2:c.1345_1364delinsCTTGGCGCT	p.Ile449LeufsTer9	p.I449Lfs*9	ENST00000320356	NM_004456.4	449	ATTGGCACTTACTATGACAAt/CTTGGCGCTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0028878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	86	443	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603148	48603148	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0028878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	63	332	0	ENST00000342988.3:c.1447+2T>C		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	245	613	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	67	338	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
CSF1R	0	MSKCC	GRCh37	5	149457763	149457763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	120	570	1	ENST00000286301.3:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000286301	NM_005211.3	214	cGg/cAg																																																																														
RAF1	0	MSKCC	GRCh37	3	12641686	12641686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	88	396	0	ENST00000251849.4:c.955G>A	p.Ala319Thr	p.A319T	ENST00000251849	NM_002880.3	319	Gca/Aca																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46527629	46527629	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	49	410	0	ENST00000262741.5:c.736A>T	p.Arg246Ter	p.R246*	ENST00000262741	NM_003629.3	246	Aga/Tga																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120461958	120461958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	45	338	0	ENST00000256646.2:c.5758G>A	p.Ala1920Thr	p.A1920T	ENST00000256646	NM_024408.3	1920	Gct/Act																																																																														
KMT2A	0	MSKCC	GRCh37	11	118307643	118307643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	51	474	0	ENST00000534358.1:c.416G>C	p.Gly139Ala	p.G139A	ENST00000534358	NM_005933.3	139	gGa/gCa																																																																														
FLT1	0	MSKCC	GRCh37	13	28908249	28908249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	177	448	0	ENST00000282397.4:c.2506G>C	p.Gly836Arg	p.G836R	ENST00000282397	NM_002019.4	836	Ggg/Cgg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351127	89351127	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	64	460	0	ENST00000301030.4:c.1823A>G	p.Lys608Arg	p.K608R	ENST00000301030	NM_001256183.1	608	aAg/aGg																																																																														
TP63	0	MSKCC	GRCh37	3	189612239	189612239	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	93	381	0	ENST00000264731.3:c.1991A>T	p.Asp664Val	p.D664V	ENST00000264731	NM_003722.4	664	gAc/gTc																																																																														
TERT	0	MSKCC	GRCh37	5	1294299	1294299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	52	333	0	ENST00000310581.5:c.702G>T	p.Leu234Phe	p.L234F	ENST00000310581	NM_198253.2	234	ttG/ttT																																																																														
IKZF1	0	MSKCC	GRCh37	7	50455142	50455142	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	64	288	0	ENST00000331340.3:c.689T>A	p.Met230Lys	p.M230K	ENST00000331340	NM_006060.4	230	aTg/aAg																																																																														
JUN	0	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	243	714	0	ENST00000371222.2:c.109_110delAG	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																														
TP53	0	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	248	562	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858279	27858279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	78	555	0	ENST00000359303.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000359303	NM_003535.2	98	Gag/Aag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748891	43748891	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	134	742	1	ENST00000382044.4:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000382044	NM_001141980.1	639	Cga/Tga																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678559	88678559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	49	378	1	ENST00000360948.2:c.977G>A	p.Arg326His	p.R326H	ENST00000360948	NM_001012338.2	326	cGt/cAt																																																																														
ACVR1	0	MSKCC	GRCh37	2	158634744	158634744	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	132	346	0	ENST00000263640.3:c.442A>G	p.Lys148Glu	p.K148E	ENST00000263640	NM_001105.4	148	Aaa/Gaa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916942	178916956	+	inframe_deletion	In_Frame_Del	DEL	AAAAGATCCTCAATC	AAAAGATCCTCAATC	-			P-0028886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	129	461	0	ENST00000263967.3:c.329_343del	p.Glu110_Arg115delinsGly	p.E110_R115delinsG	ENST00000263967	NM_006218.2	110	gAAAAGATCCTCAATCga/gga																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	89	556	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0028890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	121	490	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
CDK12	0	MSKCC	GRCh37	17	37619289	37619289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			595	40	390	0	ENST00000447079.4:c.965G>A	p.Arg322Gln	p.R322Q	ENST00000447079	NM_015083.1	322	cGa/cAa																																																																														
SOS1	0	MSKCC	GRCh37	2	39278343	39278343	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			835	73	636	0	ENST00000402219.2:c.806T>C	p.Met269Thr	p.M269T	ENST00000402219	NM_005633.3	269	aTg/aCg																																																																														
MSH2	0	MSKCC	GRCh37	2	47703631	47703631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	137	450	0	ENST00000233146.2:c.2131C>T	p.Arg711Ter	p.R711*	ENST00000233146	NM_000251.2	711	Cga/Tga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	107	507	2	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	89	506	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	73	304	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	92	492	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	201	597	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	158	666	2	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																														
ERBB3	0	MSKCC	GRCh37	12	56490980	56490980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	134	588	0	ENST00000267101.3:c.2426A>G	p.Gln809Arg	p.Q809R	ENST00000267101	NM_001982.3	809	cAg/cGg																																																																														
TET2	0	MSKCC	GRCh37	4	106164902	106164902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	70	348	1	ENST00000380013.4:c.3770C>T	p.Thr1257Met	p.T1257M	ENST00000380013	NM_001127208.2	1257	aCg/aTg																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166607	118166607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	68	292	0	ENST00000369448.3:c.1117G>A	p.Val373Ile	p.V373I	ENST00000369448	NM_017709.3	373	Gtt/Att																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	34	647	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	174	484	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	103	708	1	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	216	757	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	69	323	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
SOX9	0	MSKCC	GRCh37	17	70118918	70118918	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	184	729	0	ENST00000245479.2:c.490C>T	p.Gln164Ter	p.Q164*	ENST00000245479	NM_000346.3	164	Cag/Tag																																																																														
SUFU	0	MSKCC	GRCh37	10	104353441	104353441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	167	662	2	ENST00000369902.3:c.646G>A	p.Gly216Arg	p.G216R	ENST00000369902	NM_016169.3	216	Ggg/Agg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	89	418	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467637	50467637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	65	415	1	ENST00000331340.3:c.872C>T	p.Thr291Met	p.T291M	ENST00000331340	NM_006060.4	291	aCg/aTg																																																																														
DNMT1	1786	MSKCC	GRCh37	19	10291083	10291084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755889652		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	155	602	1	ENST00000340748.4:c.387dup	p.Lys130GlnfsTer19	p.K130Qfs*19	ENST00000340748		129	-/C																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480459	89480459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	90	319	0	ENST00000336596.2:c.2296G>A	p.Gly766Arg	p.G766R	ENST00000336596	NM_005233.5	766	Gga/Aga																																																																														
RECQL4	0	MSKCC	GRCh37	8	145742547	145742547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	108	652	0	ENST00000428558.2:c.241del	p.His81IlefsTer2	p.H81Ifs*2	ENST00000428558	NM_004260.3	81	Cat/at																																																																														
IRF4	0	MSKCC	GRCh37	6	395910	395910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	94	468	0	ENST00000380956.4:c.467C>T	p.Thr156Met	p.T156M	ENST00000380956	NM_001195286.1	156	aCg/aTg																																																																														
B2M	0	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	73	247	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
ATR	0	MSKCC	GRCh37	3	142177928	142177928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	122	490	0	ENST00000350721.4:c.7375C>T	p.Arg2459Cys	p.R2459C	ENST00000350721	NM_001184.3	2459	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112177788	112177788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	68	416	0	ENST00000257430.4:c.6497G>A	p.Arg2166Gln	p.R2166Q	ENST00000257430	NM_000038.5	2166	cGa/cAa																																																																														
POLD1	0	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	108	516	3	ENST00000440232.2:c.342delG	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																														
ASXL2	0	MSKCC	GRCh37	2	26029193	26029195	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	100	406	0	ENST00000435504.4:c.155_157del	p.Pro52del	p.P52del	ENST00000435504		52	cCTCtt/ctt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5273456	5273456	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	155	667	0	ENST00000357368.4:c.376C>T	p.Arg126Ter	p.R126*	ENST00000357368	NM_002850.3	126	Cga/Tga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8733794	8733794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	118	559	1	ENST00000356435.5:c.50G>A	p.Arg17His	p.R17H	ENST00000356435		17	cGc/cAc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	97	511	1	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																														
MSH2	0	MSKCC	GRCh37	2	47656969	47656969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	143	419	1	ENST00000233146.2:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000233146	NM_000251.2	389	Cga/Tga																																																																														
RNF43	0	MSKCC	GRCh37	17	56437606	56437606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	114	525	0	ENST00000407977.2:c.856C>T	p.Arg286Trp	p.R286W	ENST00000407977		286	Cgg/Tgg																																																																														
CD274	0	MSKCC	GRCh37	9	5466787	5466787	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	64	222	0	ENST00000381577.3:c.813del	p.Lys271AsnfsTer44	p.K271Nfs*44	ENST00000381577	NM_014143.3	270	Aaa/aa																																																																														
RARA	0	MSKCC	GRCh37	17	38510573	38510573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	29	540	0	ENST00000254066.5:c.827G>A	p.Arg276Gln	p.R276Q	ENST00000254066	NM_000964.3	276	cGg/cAg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98238356	98238356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	115	507	1	ENST00000331920.6:c.1688C>T	p.Ala563Val	p.A563V	ENST00000331920	NM_000264.3	563	gCg/gTg																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166139	118166139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	113	415	0	ENST00000369448.3:c.649G>A	p.Gly217Arg	p.G217R	ENST00000369448	NM_017709.3	217	Ggg/Agg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210740	2210740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	168	686	1	ENST00000398665.3:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000398665	NM_032482.2	413	Cgc/Tgc																																																																														
CASP8	0	MSKCC	GRCh37	2	202151254	202151254	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	115	478	0	ENST00000358485.4:c.1557delG	p.Lys520AsnfsTer10	p.K520Nfs*10	ENST00000358485	NM_001080125.1	518	atG/at																																																																														
PAX5	0	MSKCC	GRCh37	9	37015040	37015040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	75	434	0	ENST00000358127.4:c.364C>T	p.Arg122Trp	p.R122W	ENST00000358127	NM_001280556.1	122	Cgg/Tgg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164862	36164862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	199	744	0	ENST00000300305.3:c.1013C>T	p.Ala338Val	p.A338V	ENST00000300305		338	gCg/gTg																																																																														
FLT1	0	MSKCC	GRCh37	13	28979946	28979946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	130	572	0	ENST00000282397.4:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000282397	NM_002019.4	508	Cgc/Tgc																																																																														
KDR	0	MSKCC	GRCh37	4	55964315	55964315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	66	367	0	ENST00000263923.4:c.2498G>A	p.Arg833Gln	p.R833Q	ENST00000263923	NM_002253.2	833	cGg/cAg																																																																														
CARD11	0	MSKCC	GRCh37	7	2952993	2952993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	148	719	0	ENST00000396946.4:c.2947G>A	p.Val983Met	p.V983M	ENST00000396946	NM_032415.4	983	Gtg/Atg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984839	11984839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	125	466	0	ENST00000353533.5:c.385G>A	p.Ala129Thr	p.A129T	ENST00000353533	NM_003010.3	129	Gca/Aca																																																																														
PAX5	0	MSKCC	GRCh37	9	36966551	36966551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	132	499	0	ENST00000358127.4:c.775G>A	p.Glu259Lys	p.E259K	ENST00000358127	NM_001280556.1	259	Gag/Aag																																																																														
AR	0	MSKCC	GRCh37	X	66905935	66905935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	89	435	0	ENST00000374690.3:c.1852C>T	p.Arg618Trp	p.R618W	ENST00000374690	NM_000044.3	618	Cgg/Tgg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9776087	9776087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	143	632	1	ENST00000377346.4:c.551G>A	p.Arg184Gln	p.R184Q	ENST00000377346	NM_005026.3	184	cGg/cAg																																																																														
IDH2	0	MSKCC	GRCh37	15	90628529	90628529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	113	617	0	ENST00000330062.3:c.1058G>A	p.Arg353His	p.R353H	ENST00000330062	NM_002168.2	353	cGc/cAc																																																																														
CDK12	0	MSKCC	GRCh37	17	37673793	37673793	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	163	603	0	ENST00000447079.4:c.2947C>T	p.Arg983Ter	p.R983*	ENST00000447079	NM_015083.1	983	Cga/Tga																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	161	662	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32937355	32937355	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	124	493	3	ENST00000380152.3:c.8021delA	p.Lys2674ArgfsTer2	p.K2674Rfs*2	ENST00000380152		2672	atA/at																																																																														
FLT4	0	MSKCC	GRCh37	5	180047888	180047888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	167	776	1	ENST00000261937.6:c.2287G>A	p.Val763Met	p.V763M	ENST00000261937	NM_182925.4	763	Gtg/Atg																																																																														
SESN2	0	MSKCC	GRCh37	1	28599234	28599234	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	45	743	1	ENST00000253063.3:c.685delC	p.Gln229ArgfsTer18	p.Q229Rfs*18	ENST00000253063	NM_031459.4	227	gCc/gc																																																																														
LATS2	0	MSKCC	GRCh37	13	21557912	21557912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	105	438	0	ENST00000382592.4:c.1933C>T	p.Arg645Trp	p.R645W	ENST00000382592	NM_014572.2	645	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	166	765	5	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
E2F3	0	MSKCC	GRCh37	6	20481530	20481530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	85	340	0	ENST00000346618.3:c.599G>T	p.Gly200Val	p.G200V	ENST00000346618	NM_001949.4	200	gGg/gTg																																																																														
ARID2	0	MSKCC	GRCh37	12	46230605	46230605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	113	472	1	ENST00000334344.6:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000334344	NM_152641.2	285	cGg/cAg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	149	694	9	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	68	501	0	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11130306	11130306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	144	548	0	ENST00000344626.4:c.2545C>T	p.Arg849Trp	p.R849W	ENST00000344626	NM_003072.3	849	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578184	7578184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146340390		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	177	679	0	ENST00000269305.4:c.665C>T	p.Pro222Leu	p.P222L	ENST00000269305	NM_001126112.2	222	cCg/cTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8319934	8319934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	34	318	1	ENST00000356435.5:c.5567C>T	p.Thr1856Met	p.T1856M	ENST00000356435		1856	aCg/aTg																																																																														
RNF43	0	MSKCC	GRCh37	17	56448271	56448271	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	107	506	0	ENST00000407977.2:c.375+1G>A		p.X125_splice	ENST00000407977		125																																																																															
ARID1B	0	MSKCC	GRCh37	6	157528630	157528630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	160	657	0	ENST00000346085.5:c.6355G>A	p.Val2119Ile	p.V2119I	ENST00000346085	NM_020732.3	2119	Gtt/Att																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88676897	88676897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	155	544	0	ENST00000372037.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000372037	NM_004329.2	228	Cga/Tga																																																																														
POLD1	0	MSKCC	GRCh37	19	50905543	50905543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	145	818	2	ENST00000440232.2:c.671G>A	p.Arg224His	p.R224H	ENST00000440232	NM_002691.3	224	cGc/cAc																																																																														
BABAM1	0	MSKCC	GRCh37	19	17384765	17384765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	166	744	0	ENST00000359435.4:c.397C>T	p.Arg133Trp	p.R133W	ENST00000359435	NM_001033549.1	133	Cgg/Tgg																																																																														
SOS1	0	MSKCC	GRCh37	2	39222520	39222520	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	138	477	1	ENST00000402219.2:c.3090delA	p.Lys1030AsnfsTer6	p.K1030Nfs*6	ENST00000402219	NM_005633.3	1030	aaA/aa																																																																														
SOX17	0	MSKCC	GRCh37	8	55372287	55372288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	98	470	0	ENST00000297316.4:c.983dup	p.Gly331ArgfsTer34	p.G331Rfs*34	ENST00000297316	NM_022454.3	326	cac/caCc																																																																														
RASA1	0	MSKCC	GRCh37	5	86672317	86672317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	105	481	0	ENST00000274376.6:c.2119C>T	p.Arg707Cys	p.R707C	ENST00000274376	NM_002890.2	707	Cgt/Tgt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716301	52716301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	157	562	1	ENST00000322088.6:c.745C>T	p.Arg249Cys	p.R249C	ENST00000322088	NM_014225.5	249	Cgc/Tgc																																																																														
ETV6	0	MSKCC	GRCh37	12	12022454	12022454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	168	802	1	ENST00000396373.4:c.560C>T	p.Thr187Met	p.T187M	ENST00000396373	NM_001987.4	187	aCg/aTg																																																																														
AGO2	0	MSKCC	GRCh37	8	141559360	141559360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	115	618	2	ENST00000220592.5:c.1441G>A	p.Ala481Thr	p.A481T	ENST00000220592	NM_012154.3	481	Gcc/Acc																																																																														
ERG	0	MSKCC	GRCh37	21	39764303	39764303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	141	580	0	ENST00000288319.7:c.809C>T	p.Ser270Leu	p.S270L	ENST00000288319	NM_182918.3	270	tCg/tTg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489568	56489568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	119	438	0	ENST00000267101.3:c.2033G>T	p.Arg678Met	p.R678M	ENST00000267101	NM_001982.3	678	aGg/aTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244068	5244068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	128	706	1	ENST00000357368.4:c.1414G>A	p.Val472Met	p.V472M	ENST00000357368	NM_002850.3	472	Gtg/Atg																																																																														
ERCC3	0	MSKCC	GRCh37	2	128015228	128015228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	134	533	1	ENST00000285398.2:c.2293C>T	p.Arg765Trp	p.R765W	ENST00000285398	NM_000122.1	765	Cgg/Tgg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31017790	31017790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	152	723	1	ENST00000375687.4:c.652C>T	p.Arg218Cys	p.R218C	ENST00000375687	NM_015338.5	218	Cgt/Tgt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9777608	9777608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	139	593	0	ENST00000377346.4:c.944C>T	p.Ser315Phe	p.S315F	ENST00000377346	NM_005026.3	315	tCc/tTc																																																																														
SPEN	0	MSKCC	GRCh37	1	16258454	16258454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	144	628	0	ENST00000375759.3:c.5719G>A	p.Val1907Ile	p.V1907I	ENST00000375759	NM_015001.2	1907	Gtc/Atc																																																																														
SPEN	0	MSKCC	GRCh37	1	16258928	16258928	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	177	776	0	ENST00000375759.3:c.6198del	p.Lys2066AsnfsTer20	p.K2066Nfs*20	ENST00000375759	NM_015001.2	2065	Aaa/aa																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798843	45798843	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	124	601	0	ENST00000372115.3:c.347-1G>A		p.X116_splice	ENST00000372115	NM_001048171.1	116																																																																															
ARID5B	0	MSKCC	GRCh37	10	63816920	63816920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	70	272	0	ENST00000279873.7:c.891C>A	p.Asn297Lys	p.N297K	ENST00000279873	NM_032199.2	297	aaC/aaA																																																																														
SUFU	0	MSKCC	GRCh37	10	104375095	104375095	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	133	552	0	ENST00000369902.3:c.1093C>T	p.Gln365Ter	p.Q365*	ENST00000369902	NM_016169.3	365	Cag/Tag																																																																														
HRAS	0	MSKCC	GRCh37	11	533485	533485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	162	664	0	ENST00000311189.7:c.418C>A	p.Pro140Thr	p.P140T	ENST00000311189		140	Ccc/Acc																																																																														
IGF2	0	MSKCC	GRCh37	11	2161499	2161499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	138	529	0	ENST00000434045.2:c.28G>A	p.Val10Met	p.V10M	ENST00000434045	NM_001127598.1	10	Gtg/Atg																																																																														
MEN1	0	MSKCC	GRCh37	11	64572637	64572637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	134	699	0	ENST00000337652.1:c.1234C>A	p.Pro412Thr	p.P412T	ENST00000337652	NM_130803.2	412	Cct/Act																																																																														
PGR	0	MSKCC	GRCh37	11	100998316	100998316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	11	27	0	ENST00000325455.5:c.1486C>T	p.Pro496Ser	p.P496S	ENST00000325455	NM_001202474.3	496	Ccc/Tcc																																																																														
KRAS	0	MSKCC	GRCh37	12	25368420	25368422	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	105	380	0	ENST00000256078.4:c.523_525del	p.Glu175del	p.E175del	ENST00000256078	NM_033360.2	175	GAA/-																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420420	49420420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	141	676	0	ENST00000301067.7:c.15329C>T	p.Pro5110Leu	p.P5110L	ENST00000301067	NM_003482.3	5110	cCc/cTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445499	49445500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	116	807	0	ENST00000301067.7:c.1966dup	p.Leu656ProfsTer12	p.L656Pfs*12	ENST00000301067	NM_003482.3	656	ctg/cCtg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	135	592	0	ENST00000267101.3:c.1166C>T	p.Thr389Ile	p.T389I	ENST00000267101	NM_001982.3	389	aCa/aTa																																																																														
CDK4	0	MSKCC	GRCh37	12	58143021	58143021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	129	684	0	ENST00000257904.6:c.763C>T	p.Arg255Cys	p.R255C	ENST00000257904	NM_000075.3	255	Cgc/Tgc																																																																														
PTPN11	0	MSKCC	GRCh37	12	112924357	112924357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	159	587	1	ENST00000351677.2:c.1303G>A	p.Val435Met	p.V435M	ENST00000351677	NM_002834.3	435	Gtg/Atg																																																																														
FLT3	0	MSKCC	GRCh37	13	28608311	28608311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	148	576	0	ENST00000241453.7:c.1745C>T	p.Thr582Ile	p.T582I	ENST00000241453	NM_004119.2	582	aCc/aTc																																																																														
RB1	0	MSKCC	GRCh37	13	48942724	48942725	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	84	327	0	ENST00000267163.4:c.1117_1118dup	p.Pro374LeufsTer7	p.P374Lfs*7	ENST00000267163	NM_000321.2	371	cca/cCAca																																																																														
RB1	0	MSKCC	GRCh37	13	48951105	48951105	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	106	373	0	ENST00000267163.4:c.1267G>T	p.Gly423Ter	p.G423*	ENST00000267163	NM_000321.2	423	Gga/Tga																																																																														
PRKD1	0	MSKCC	GRCh37	14	30396592	30396592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	72	251	2	ENST00000331968.5:c.127G>A	p.Ala43Thr	p.A43T	ENST00000331968	NM_002742.2	43	Gcg/Acg																																																																														
MGA	0	MSKCC	GRCh37	15	42034989	42034989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	155	585	0	ENST00000219905.7:c.4831G>A	p.Ala1611Thr	p.A1611T	ENST00000219905	NM_001164273.1	1611	Gct/Act																																																																														
NTRK3	0	MSKCC	GRCh37	15	88799218	88799219	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	87	617	0	ENST00000360948.2:c.166dup	p.Leu56ProfsTer82	p.L56Pfs*82	ENST00000360948	NM_001012338.2	56	ctc/cCtc																																																																														
BLM	0	MSKCC	GRCh37	15	91306294	91306294	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	117	393	0	ENST00000355112.3:c.1986del	p.Lys662AsnfsTer12	p.K662Nfs*12	ENST00000355112	NM_000057.2	661	Aaa/aa																																																																														
TSC2	0	MSKCC	GRCh37	16	2121877	2121877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	119	740	0	ENST00000219476.3:c.2039G>A	p.Arg680Gln	p.R680Q	ENST00000219476	NM_000548.3	680	cGg/cAg																																																																														
TSC2	0	MSKCC	GRCh37	16	2129119	2129119	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	159	725	0	ENST00000219476.3:c.3053T>C	p.Leu1018Pro	p.L1018P	ENST00000219476	NM_000548.3	1018	cTc/cCc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89352576	89352576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	119	405	0	ENST00000301030.4:c.763C>T	p.Arg255Trp	p.R255W	ENST00000301030	NM_001256183.1	255	Cgg/Tgg																																																																														
STAT5A	0	MSKCC	GRCh37	17	40457661	40457661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	148	549	1	ENST00000345506.4:c.1414G>A	p.Gly472Ser	p.G472S	ENST00000345506	NM_003152.3	472	Ggc/Agc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78936750	78936750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	165	725	0	ENST00000306801.3:c.3832G>A	p.Ala1278Thr	p.A1278T	ENST00000306801	NM_020761.2	1278	Gcc/Acc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226875	2226875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	41	210	0	ENST00000398665.3:c.4355G>A	p.Gly1452Asp	p.G1452D	ENST00000398665	NM_032482.2	1452	gGc/gAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212221	5212221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	120	615	1	ENST00000357368.4:c.4810G>A	p.Ala1604Thr	p.A1604T	ENST00000357368	NM_002850.3	1604	Gcc/Acc																																																																														
BRD4	0	MSKCC	GRCh37	19	15375495	15375495	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	166	824	1	ENST00000263377.2:c.932del	p.Pro311ArgfsTer18	p.P311Rfs*18	ENST00000263377	NM_058243.2	311	cCg/cg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36222965	36222965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	189	811	0	ENST00000222270.7:c.5594T>C	p.Ile1865Thr	p.I1865T	ENST00000222270	NM_014727.1	1865	aTc/aCc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228795	36228795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	145	710	1	ENST00000222270.7:c.7694G>A	p.Arg2565His	p.R2565H	ENST00000222270	NM_014727.1	2565	cGt/cAt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716280	52716280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	102	583	0	ENST00000322088.6:c.724G>A	p.Ala242Thr	p.A242T	ENST00000322088	NM_014225.5	242	Gcc/Acc																																																																														
IRS1	0	MSKCC	GRCh37	2	227660606	227660606	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141295519		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	109	520	0	ENST00000305123.5:c.2849G>A	p.Arg950Gln	p.R950Q	ENST00000305123	NM_005544.2	950	cGg/cAg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264834	46264834	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	131	487	0	ENST00000371998.3:c.1704del	p.Ser569ValfsTer69	p.S569Vfs*69	ENST00000371998		568	aaG/aa																																																																														
RAF1	0	MSKCC	GRCh37	3	12633229	12633229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	119	536	0	ENST00000251849.4:c.1171A>G	p.Arg391Gly	p.R391G	ENST00000251849	NM_002880.3	391	Agg/Ggg																																																																														
MST1R	0	MSKCC	GRCh37	3	49928927	49928927	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	164	742	0	ENST00000296474.3:c.3439A>G	p.Ile1147Val	p.I1147V	ENST00000296474	NM_002447.2	1147	Att/Gtt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71015044	71015044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	63	261	0	ENST00000318789.4:c.1886C>T	p.Ala629Val	p.A629V	ENST00000318789	NM_032682.5	629	gCc/gTc																																																																														
KDR	0	MSKCC	GRCh37	4	55948792	55948792	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	119	370	0	ENST00000263923.4:c.3673C>T	p.Gln1225Ter	p.Q1225*	ENST00000263923	NM_002253.2	1225	Cag/Tag																																																																														
TET2	0	MSKCC	GRCh37	4	106197435	106197435	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	66	384	0	ENST00000380013.4:c.5772del	p.Ala1925ProfsTer25	p.A1925Pfs*25	ENST00000380013	NM_001127208.2	1923	gAa/ga																																																																														
INPP4B	0	MSKCC	GRCh37	4	143007314	143007314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	99	354	0	ENST00000262992.4:c.2470A>G	p.Met824Val	p.M824V	ENST00000262992	NM_001101669.1	824	Atg/Gtg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143081595	143081595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	99	469	0	ENST00000262992.4:c.1479G>T	p.Glu493Asp	p.E493D	ENST00000262992	NM_001101669.1	493	gaG/gaT																																																																														
FAT1	0	MSKCC	GRCh37	4	187541199	187541199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	80	341	0	ENST00000441802.2:c.6541G>C	p.Val2181Leu	p.V2181L	ENST00000441802	NM_005245.3	2181	Gtg/Ctg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155573	56155573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	78	410	1	ENST00000399503.3:c.665G>T	p.Gly222Val	p.G222V	ENST00000399503	NM_005921.1	222	gGa/gTa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56179445	56179445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	88	353	0	ENST00000399503.3:c.3758C>T	p.Ala1253Val	p.A1253V	ENST00000399503	NM_005921.1	1253	gCa/gTa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56183314	56183314	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	65	500	0	ENST00000399503.3:c.4224A>C	p.Gln1408His	p.Q1408H	ENST00000399503	NM_005921.1	1408	caA/caC																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149514472	149514472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	108	634	0	ENST00000261799.4:c.472G>A	p.Val158Met	p.V158M	ENST00000261799	NM_002609.3	158	Gtg/Atg																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045889	26045890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	109	450	0	ENST00000540144.1:c.254dup	p.Gln86ProfsTer13	p.Q86Pfs*13	ENST00000540144	NM_003531.2	84	cgt/cgTt																																																																														
LATS1	0	MSKCC	GRCh37	6	150016259	150016259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	141	489	0	ENST00000253339.5:c.447G>C	p.Glu149Asp	p.E149D	ENST00000253339		149	gaG/gaC																																																																														
KMT2C	0	MSKCC	GRCh37	7	151884921	151884921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	89	351	0	ENST00000262189.6:c.4672C>T	p.Arg1558Trp	p.R1558W	ENST00000262189	NM_170606.2	1558	Cgg/Tgg																																																																														
LYN	0	MSKCC	GRCh37	8	56863088	56863088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	143	595	1	ENST00000519728.1:c.355G>A	p.Ala119Thr	p.A119T	ENST00000519728	NM_002350.3	119	Gcc/Acc																																																																														
JAK2	0	MSKCC	GRCh37	9	5081805	5081805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	71	353	0	ENST00000381652.3:c.2515C>T	p.Arg839Trp	p.R839W	ENST00000381652	NM_004972.3	839	Cgg/Tgg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486274	8486274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	24	344	0	ENST00000356435.5:c.2543A>G	p.Asp848Gly	p.D848G	ENST00000356435		848	gAc/gGc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974789	21974789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	38	145	1	ENST00000304494.5:c.38C>T	p.Ala13Val	p.A13V	ENST00000304494	NM_000077.4	13	gCt/gTt																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974789	21974789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	38	145	1	ENST00000304494.5:c.38C>T	p.Ala13Val	p.A13V	ENST00000304494	NM_000077.4	13	gCt/gTt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98218572	98218572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	49	457	3	ENST00000331920.6:c.3292G>A	p.Val1098Ile	p.V1098I	ENST00000331920	NM_000264.3	1098	Gtt/Att																																																																														
ABL1	0	MSKCC	GRCh37	9	133760481	133760481	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143811852		P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	170	724	1	ENST00000318560.5:c.2804C>T	p.Thr935Met	p.T935M	ENST00000318560	NM_005157.4	935	aCg/aTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413082	139413082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	126	608	0	ENST00000277541.6:c.1060G>A	p.Val354Met	p.V354M	ENST00000277541	NM_017617.3	354	Gtg/Atg																																																																														
BCOR	0	MSKCC	GRCh37	X	39914683	39914683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	42	562	2	ENST00000378444.4:c.4679C>T	p.Thr1560Met	p.T1560M	ENST00000378444	NM_001123385.1	1560	aCg/aTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63411003	63411003	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	151	600	0	ENST00000330258.3:c.2164T>G	p.Phe722Val	p.F722V	ENST00000330258	NM_152424.3	722	Ttc/Gtc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	157	594	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	85	351	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
ATRX	0	MSKCC	GRCh37	X	76888799	76888799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	82	274	0	ENST00000373344.5:c.5030G>A	p.Gly1677Asp	p.G1677D	ENST00000373344	NM_000489.3	1677	gGt/gAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023968	27023975	+	frameshift_variant	Frame_Shift_Del	DEL	CCACGCGC	CCACGCGC	-			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	11	98	0	ENST00000324856.7:c.1077_1084del	p.Ala360GlufsTer37	p.A360Efs*37	ENST00000324856	NM_006015.4	358	caCCACGCGCcc/cacc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4101030	4101030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	24	498	0	ENST00000262948.5:c.692G>T	p.Arg231Leu	p.R231L	ENST00000262948	NM_030662.3	231	cGc/cTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023571	27023571	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	22	336	0	ENST00000324856.7:c.680del	p.Pro227ArgfsTer5	p.P227Rfs*5	ENST00000324856	NM_006015.4	226	gCc/gc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433844	49433844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	211	908	2	ENST00000301067.7:c.7709C>A	p.Pro2570His	p.P2570H	ENST00000301067	NM_003482.3	2570	cCc/cAc																																																																														
IGF1	0	MSKCC	GRCh37	12	102811685	102811685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	157	697	0	ENST00000307046.8:c.499G>A	p.Ala167Thr	p.A167T	ENST00000307046	NM_001111285.1	167	Gca/Aca																																																																														
CREBBP	0	MSKCC	GRCh37	16	3790472	3790472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	128	602	1	ENST00000262367.5:c.4061C>A	p.Ala1354Asp	p.A1354D	ENST00000262367	NM_004380.2	1354	gCc/gAc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351780	89351780	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	221	889	0	ENST00000301030.4:c.1170T>G	p.Ser390Arg	p.S390R	ENST00000301030	NM_001256183.1	390	agT/agG																																																																														
CD79B	0	MSKCC	GRCh37	17	62006596	62006596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	94	504	1	ENST00000392795.3:c.683G>A	p.Gly228Asp	p.G228D	ENST00000392795	NM_001039933.1	228	gGc/gAc																																																																														
BARD1	0	MSKCC	GRCh37	2	215646047	215646047	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	77	549	0	ENST00000260947.4:c.551C>A	p.Ser184Tyr	p.S184Y	ENST00000260947	NM_000465.2	184	tCc/tAc																																																																														
RYBP	0	MSKCC	GRCh37	3	72495661	72495661	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	86	337	0	ENST00000477973.2:c.409A>T	p.Lys137Asn	p.K137N	ENST00000477973	NM_012234.5	137	aaA/aaT																																																																														
GATA2	0	MSKCC	GRCh37	3	128202822	128202822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	80	625	0	ENST00000341105.2:c.898G>T	p.Ala300Ser	p.A300S	ENST00000341105	NM_032638.4	300	Gcc/Tcc																																																																														
TP63	0	MSKCC	GRCh37	3	189584582	189584582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	31	409	1	ENST00000264731.3:c.878C>A	p.Pro293His	p.P293H	ENST00000264731	NM_003722.4	293	cCc/cAc																																																																														
KDR	0	MSKCC	GRCh37	4	55972092	55972092	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	87	423	0	ENST00000263923.4:c.1552G>T	p.Val518Phe	p.V518F	ENST00000263923	NM_002253.2	518	Gtt/Ttt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153250823	153250823	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	19	383	0	ENST00000281708.4:c.1236+1G>A		p.X412_splice	ENST00000281708	NM_033632.3	412																																																																															
APC	0	MSKCC	GRCh37	5	112174771	112174771	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	75	361	0	ENST00000257430.4:c.3482del	p.Asn1161IlefsTer4	p.N1161Ifs*4	ENST00000257430	NM_000038.5	1160	acA/ac																																																																														
APC	0	MSKCC	GRCh37	5	112178105	112178105	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	113	396	0	ENST00000257430.4:c.6814A>T	p.Arg2272Ter	p.R2272*	ENST00000257430	NM_000038.5	2272	Aga/Tga																																																																														
CARD11	0	MSKCC	GRCh37	7	2974217	2974217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	129	700	0	ENST00000396946.4:c.1388G>T	p.Gly463Val	p.G463V	ENST00000396946	NM_032415.4	463	gGg/gTg																																																																														
MYC	0	MSKCC	GRCh37	8	128750547	128750547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	141	582	0	ENST00000377970.2:c.84C>A	p.Asp28Glu	p.D28E	ENST00000377970	NM_002467.4	28	gaC/gaA																																																																														
TEK	0	MSKCC	GRCh37	9	27180361	27180361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	70	353	0	ENST00000380036.4:c.1025G>A	p.Arg342Lys	p.R342K	ENST00000380036	NM_000459.3	342	aGa/aAa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390632	139390632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	173	856	0	ENST00000277541.6:c.7559G>T	p.Trp2520Leu	p.W2520L	ENST00000277541	NM_017617.3	2520	tGg/tTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399786	139399786	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	132	592	0	ENST00000277541.6:c.4562G>C	p.Cys1521Ser	p.C1521S	ENST00000277541	NM_017617.3	1521	tGc/tCc																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841196	15841196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	69	194	0	ENST00000307771.7:c.1280G>T	p.Arg427Met	p.R427M	ENST00000307771	NM_005089.3	427	aGg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	86	581	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
STK11	0	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	135	715	0	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7574027	7574027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	65	624	1	ENST00000269305.4:c.1000G>T	p.Gly334Trp	p.G334W	ENST00000269305	NM_001126112.2	334	Ggg/Tgg																																																																														
SETD2	0	MSKCC	GRCh37	3	47155393	47155393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	60	469	1	ENST00000409792.3:c.4688G>T	p.Gly1563Val	p.G1563V	ENST00000409792	NM_014159.6	1563	gGc/gTc																																																																														
MSI1	0	MSKCC	GRCh37	12	120800935	120800935	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	115	534	0	ENST00000257552.2:c.313del	p.Val105Ter	p.V105*	ENST00000257552	NM_002442.3	105	Gtg/tg																																																																														
STK11	0	MSKCC	GRCh37	19	1223090	1223090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	59	685	0	ENST00000326873.7:c.1027G>T	p.Asp343Tyr	p.D343Y	ENST00000326873	NM_000455.4	343	Gac/Tac																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602328	10602328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	158	788	1	ENST00000171111.5:c.1250G>A	p.Gly417Glu	p.G417E	ENST00000171111	NM_203500.1	417	gGg/gAg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66233123	66233123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	30	401	0	ENST00000273854.3:c.1876G>T	p.Ala626Ser	p.A626S	ENST00000273854	NM_004439.5	626	Gca/Tca																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249507	153249507	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	99	552	0	ENST00000281708.4:c.1271T>C	p.Val424Ala	p.V424A	ENST00000281708	NM_033632.3	424	gTa/gCa																																																																														
BRAF	0	MSKCC	GRCh37	7	140508747	140508747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	46	583	0	ENST00000288602.6:c.553C>A	p.Leu185Met	p.L185M	ENST00000288602	NM_004333.4	185	Ctg/Atg																																																																														
AGO2	0	MSKCC	GRCh37	8	141551289	141551289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	245	763	0	ENST00000220592.5:c.2008G>T	p.Gly670Cys	p.G670C	ENST00000220592	NM_012154.3	670	Ggt/Tgt																																																																														
CDC73	0	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	40	291	0	ENST00000367435.3:c.440G>T	p.Arg147Leu	p.R147L	ENST00000367435	NM_024529.4	147	cGc/cTc																																																																														
RET	0	MSKCC	GRCh37	10	43600605	43600605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	47	475	0	ENST00000355710.3:c.831C>A	p.Asp277Glu	p.D277E	ENST00000355710	NM_020975.4	277	gaC/gaA																																																																														
POLE	0	MSKCC	GRCh37	12	133218321	133218321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	56	606	1	ENST00000320574.5:c.5290G>T	p.Ala1764Ser	p.A1764S	ENST00000320574	NM_006231.2	1764	Gcc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	79	537	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212283	36212283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	56	560	2	ENST00000222270.7:c.2034G>T	p.Glu678Asp	p.E678D	ENST00000222270	NM_014727.1	678	gaG/gaT																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244158	153244158	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	34	500	0	ENST00000281708.4:c.1999G>C	p.Gly667Arg	p.G667R	ENST00000281708	NM_033632.3	667	Ggg/Cgg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31464425	31464425	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	252	743	1	ENST00000344624.3:c.2492A>T	p.Lys831Met	p.K831M	ENST00000344624		831	aAg/aTg																																																																														
KLF4	0	MSKCC	GRCh37	9	110249800	110249800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	73	650	0	ENST00000374672.4:c.875C>T	p.Pro292Leu	p.P292L	ENST00000374672	NM_004235.4	292	cCc/cTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944607	40944607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	132	326	0	ENST00000373198.4:c.1895G>A	p.Arg632Gln	p.R632Q	ENST00000373198	NM_133170.3	632	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	504	553	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
NF1	0	MSKCC	GRCh37	17	29541542	29541542	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	13	567	0	ENST00000358273.4:c.1466A>G	p.Tyr489Cys	p.Y489C	ENST00000358273	NM_001042492.2	489	tAt/tGt																																																																														
RB1	0	MSKCC	GRCh37	13	49030416	49030416	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	148	468	1	ENST00000267163.4:c.1891C>T	p.Gln631Ter	p.Q631*	ENST00000267163	NM_000321.2	631	Caa/Taa																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870809	12870809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	95	158	0	ENST00000228872.4:c.37del	p.Leu13TrpfsTer29	p.L13Wfs*29	ENST00000228872	NM_004064.3	12	agC/ag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739027	40739027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	244	470	1	ENST00000373198.4:c.3257G>A	p.Arg1086His	p.R1086H	ENST00000373198	NM_133170.3	1086	cGc/cAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76891523	76891527	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAA	GTGAA	-			P-0028900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	160	396	0	ENST00000373344.5:c.4578_4582del	p.Ser1527HisfsTer13	p.S1527Hfs*13	ENST00000373344	NM_000489.3	1526	gcTTCACcc/gccc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	98	379	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	155	653	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																														
NTRK1	0	MSKCC	GRCh37	1	156848967	156848967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	156	567	0	ENST00000524377.1:c.1859G>T	p.Gly620Val	p.G620V	ENST00000524377	NM_002529.3	620	gGc/gTc																																																																														
ATM	0	MSKCC	GRCh37	11	108200943	108200943	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0028906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	74	272	0	ENST00000278616.4:c.7310A>C	p.Tyr2437Ser	p.Y2437S	ENST00000278616	NM_000051.3	2437	tAc/tCc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197707	66197707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	117	369	0	ENST00000273854.3:c.2992G>T	p.Ala998Ser	p.A998S	ENST00000273854	NM_004439.5	998	Gct/Tct																																																																														
TERT	0	MSKCC	GRCh37	5	1266635	1266635	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	118	488	0	ENST00000310581.5:c.2598G>C	p.Leu866Phe	p.L866F	ENST00000310581	NM_198253.2	866	ttG/ttC																																																																														
HGF	0	MSKCC	GRCh37	7	81372708	81372708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	95	343	0	ENST00000222390.5:c.826C>A	p.Pro276Thr	p.P276T	ENST00000222390	NM_000601.4	276	Cct/Act																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	127	635	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0028909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	41	282	0	ENST00000371953.3:c.801+1G>A		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
BMPR1A	0	MSKCC	GRCh37	10	88659647	88659647	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	89	501	0	ENST00000372037.3:c.430G>T	p.Gly144Cys	p.G144C	ENST00000372037	NM_004329.2	144	Ggt/Tgt																																																																														
IGF2	0	MSKCC	GRCh37	11	2161390	2161390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	80	450	0	ENST00000434045.2:c.137G>A	p.Arg46His	p.R46H	ENST00000434045	NM_001127598.1	46	cGc/cAc																																																																														
AURKB	0	MSKCC	GRCh37	17	8111076	8111076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	69	527	0	ENST00000585124.1:c.131G>T	p.Arg44Leu	p.R44L	ENST00000585124	NM_004217.3	44	cGc/cTc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927385	178927385	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0028915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	76	212	0	ENST00000263967.3:c.1148G>A	p.Trp383Ter	p.W383*	ENST00000263967	NM_006218.2	383	tGg/tAg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	25	397	1	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			678	162	646	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
GNAS	0	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			508	135	391	0	ENST00000371085.3:c.680A>T	p.Gln227Leu	p.Q227L	ENST00000371085	NM_000516.4	227	cAg/cTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41514515	41514515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			638	45	496	0	ENST00000373198.4:c.146C>A	p.Thr49Asn	p.T49N	ENST00000373198	NM_133170.3	49	aCc/aAc																																																																														
JAK1	0	MSKCC	GRCh37	1	65323428	65323428	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	89	450	0	ENST00000342505.4:c.1369G>T	p.Gly457Ter	p.G457*	ENST00000342505	NM_002227.2	457	Gga/Tga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495050	56495050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	92	527	0	ENST00000267101.3:c.3407G>A	p.Arg1136His	p.R1136H	ENST00000267101	NM_001982.3	1136	cGc/cAc																																																																														
GLI1	0	MSKCC	GRCh37	12	57864591	57864592	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	106	718	1	ENST00000228682.2:c.2068_2069delinsAT	p.Pro690Ile	p.P690I	ENST00000228682	NM_005269.2	690	CCc/ATc																																																																														
STK11	0	MSKCC	GRCh37	19	1220433	1220433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	92	621	0	ENST00000326873.7:c.526G>T	p.Asp176Tyr	p.D176Y	ENST00000326873	NM_000455.4	176	Gac/Tac																																																																														
CUL3	0	MSKCC	GRCh37	2	225342995	225342995	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	146	501	0	ENST00000264414.4:c.2097A>T	p.Arg699Ser	p.R699S	ENST00000264414	NM_003590.4	699	agA/agT																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149509368	149509368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	80	465	0	ENST00000261799.4:c.1531C>A	p.Arg511Ser	p.R511S	ENST00000261799	NM_002609.3	511	Cgc/Agc																																																																														
STAG2	0	MSKCC	GRCh37	X	123200032	123200032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	21	236	0	ENST00000218089.9:c.2104G>T	p.Asp702Tyr	p.D702Y	ENST00000218089	NM_001042749.1	702	Gac/Tac																																																																														
CSDE1	0	MSKCC	GRCh37	1	115275431	115275431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	23	310	0	ENST00000438362.2:c.982C>T	p.Pro328Ser	p.P328S	ENST00000438362	NM_001242891.1	328	Cca/Tca																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458017	120458017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	92	425	0	ENST00000256646.2:c.7328C>T	p.Pro2443Leu	p.P2443L	ENST00000256646	NM_024408.3	2443	cCt/cTt																																																																														
EED	0	MSKCC	GRCh37	11	85968579	85968579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	24	282	0	ENST00000263360.6:c.575C>T	p.Ala192Val	p.A192V	ENST00000263360	NM_003797.3	192	gCt/gTt																																																																														
CDK8	0	MSKCC	GRCh37	13	26975467	26975467	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	70	399	0	ENST00000381527.3:c.1093G>T	p.Asp365Tyr	p.D365Y	ENST00000381527	NM_001260.1	365	Gat/Tat																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66521938	66521938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	33	327	1	ENST00000358598.2:c.593G>A	p.Gly198Glu	p.G198E	ENST00000358598	NM_212471.2	198	gGg/gAg																																																																														
BRD4	0	MSKCC	GRCh37	19	15353804	15353804	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	27	439	0	ENST00000263377.2:c.3076del	p.Gln1026SerfsTer42	p.Q1026Sfs*42	ENST00000263377	NM_058243.2	1026	Cag/ag																																																																														
JAK3	0	MSKCC	GRCh37	19	17954587	17954587	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	111	621	2	ENST00000458235.1:c.307C>A	p.Arg103Ser	p.R103S	ENST00000458235	NM_000215.3	103	Cgc/Agc																																																																														
ALK	0	MSKCC	GRCh37	2	29940476	29940476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	35	405	1	ENST00000389048.3:c.755C>A	p.Ser252Tyr	p.S252Y	ENST00000389048	NM_004304.4	252	tCc/tAc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153271241	153271242	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0028916-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	19	267	0	ENST00000281708.4:c.536_537delinsTT	p.Arg179Leu	p.R179L	ENST00000281708	NM_033632.3	179	cGC/cTT																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913079	32913080	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	179	522	1	ENST00000380152.3:c.4593dup	p.Val1532SerfsTer2	p.V1532Sfs*2	ENST00000380152		1529	-/A																																																																														
TCF3	0	MSKCC	GRCh37	19	1619446	1619446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	128	512	0	ENST00000344749.5:c.1195G>A	p.Glu399Lys	p.E399K	ENST00000344749	NM_001136139.2	399	Gag/Aag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2213923	2213923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	289	591	0	ENST00000398665.3:c.1735C>T	p.Arg579Trp	p.R579W	ENST00000398665	NM_032482.2	579	Cgg/Tgg																																																																														
FGFR1	0	MSKCC	GRCh37	8	38271503	38271503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	66	638	2	ENST00000425967.3:c.2318C>T	p.Ser773Leu	p.S773L	ENST00000425967	NM_001174067.1	773	tCa/tTa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929041	44929041	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0028918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	224	498	0	ENST00000377967.4:c.2141T>G	p.Leu714Ter	p.L714*	ENST00000377967	NM_021140.2	714	tTa/tGa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	46	354	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
CDK4	0	MSKCC	GRCh37	12	58144731	58144731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	33	392	0	ENST00000257904.6:c.497G>A	p.Ser166Asn	p.S166N	ENST00000257904	NM_000075.3	166	aGc/aAc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061477	38061477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	24	386	0	ENST00000250448.2:c.512C>G	p.Pro171Arg	p.P171R	ENST00000250448	NM_004496.3	171	cCg/cGg																																																																														
CBFB	0	MSKCC	GRCh37	16	67063694	67063702	+	inframe_deletion	In_Frame_Del	DEL	GCCGCGACG	GCCGCGACG	-			P-0028922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	25	290	0	ENST00000412916.2:c.148_156del	p.Asp50_Arg52del	p.D50_R52del	ENST00000412916		48	tGCCGCGACGgc/tgc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916923	178916923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	48	534	0	ENST00000263967.3:c.310C>A	p.Pro104Thr	p.P104T	ENST00000263967	NM_006218.2	104	Cca/Aca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106608	27106609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	72	565	0	ENST00000324856.7:c.6220dup	p.Ser2074PhefsTer25	p.S2074Ffs*25	ENST00000324856	NM_006015.4	2073	-/T																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	59	389	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CYLD	0	MSKCC	GRCh37	16	50825539	50825539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	59	486	0	ENST00000398568.2:c.2170G>A	p.Val724Ile	p.V724I	ENST00000398568	NM_001042412.1	724	Gtt/Att																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0028923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	63	682	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0028923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	33	343	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0028923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	33	343	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105682	27105682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	132	288	0	ENST00000324856.7:c.5293G>A	p.Glu1765Lys	p.E1765K	ENST00000324856	NM_006015.4	1765	Gaa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107096	27107096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	196	376	0	ENST00000324856.7:c.6707G>C	p.Arg2236Pro	p.R2236P	ENST00000324856	NM_006015.4	2236	cGc/cCc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107130	27107130	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	171	410	0	ENST00000324856.7:c.6742del	p.His2248ThrfsTer19	p.H2248Tfs*19	ENST00000324856	NM_006015.4	2247	aaC/aa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107183	27107183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	32	418	0	ENST00000324856.7:c.6794C>A	p.Pro2265Gln	p.P2265Q	ENST00000324856	NM_006015.4	2265	cCg/cAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89624286	89624336	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTCGACTTAGACTTGACCTGTATCCATTTCTGCGGCTGCTCCTCTTTACC	ATTCGACTTAGACTTGACCTGTATCCATTTCTGCGGCTGCTCCTCTTTACC	-			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	32	326	0	ENST00000371953.3:c.60_79+31del		p.X20_splice	ENST00000371953	NM_000314.4	20																																																																															
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	260	407	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	204	443	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64135700	64135700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	57	464	0	ENST00000334205.4:c.1168C>T	p.Arg390Trp	p.R390W	ENST00000334205	NM_003942.2	390	Cgg/Tgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	402	482	6	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KDM5A	0	MSKCC	GRCh37	12	416644	416644	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	29	249	0	ENST00000399788.2:c.3906del	p.Ala1303GlnfsTer23	p.A1303Qfs*23	ENST00000399788	NM_001042603.1	1302	aaA/aa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	150	338	5	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
RAD52	0	MSKCC	GRCh37	12	1025866	1025866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	197	394	0	ENST00000358495.3:c.664G>A	p.Val222Met	p.V222M	ENST00000358495	NM_134424.2	222	Gtg/Atg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	292	576	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440064	49440064	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	143	538	0	ENST00000301067.7:c.4562T>C	p.Ile1521Thr	p.I1521T	ENST00000301067	NM_003482.3	1521	aTc/aCc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495414	56495414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	214	494	0	ENST00000267101.3:c.3604C>T	p.Arg1202Trp	p.R1202W	ENST00000267101	NM_001982.3	1202	Cgg/Tgg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246549	105246549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	8	385	0	ENST00000349310.3:c.51G>T	p.Glu17Asp	p.E17D	ENST00000349310	NM_001014432.1	17	gaG/gaT																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	18	329	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																														
MGA	0	MSKCC	GRCh37	15	42040903	42040903	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	185	442	0	ENST00000219905.7:c.5281C>T	p.Arg1761Ter	p.R1761*	ENST00000219905	NM_001164273.1	1761	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67654664	67654664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	213	405	0	ENST00000264010.4:c.1151G>A	p.Cys384Tyr	p.C384Y	ENST00000264010	NM_006565.3	384	tGc/tAc																																																																														
CTCF	0	MSKCC	GRCh37	16	67662450	67662450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	206	478	0	ENST00000264010.4:c.1696C>T	p.Arg566Cys	p.R566C	ENST00000264010	NM_006565.3	566	Cgt/Tgt																																																																														
CDH1	0	MSKCC	GRCh37	16	68853324	68853324	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	28	382	0	ENST00000261769.5:c.1707C>G	p.Asp569Glu	p.D569E	ENST00000261769	NM_004360.3	569	gaC/gaG																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89341532	89341532	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	173	398	0	ENST00000301030.4:c.7538del	p.Gly2513GlufsTer14	p.G2513Efs*14	ENST00000301030	NM_001256183.1	2513	gGa/ga																																																																														
CDK12	0	MSKCC	GRCh37	17	37627575	37627575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	158	503	0	ENST00000447079.4:c.1490C>T	p.Ala497Val	p.A497V	ENST00000447079	NM_015083.1	497	gCa/gTa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63545705	63545705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	204	397	1	ENST00000307078.5:c.889G>A	p.Ala297Thr	p.A297T	ENST00000307078	NM_004655.3	297	Gcc/Acc																																																																														
TCF3	0	MSKCC	GRCh37	19	1619323	1619323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	250	431	3	ENST00000344749.5:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000344749	NM_001136139.2	440	Gca/Aca																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272114	15272114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199995195		P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	212	417	0	ENST00000263388.2:c.6325C>T	p.Arg2109Trp	p.R2109W	ENST00000263388	NM_000435.2	2109	Cgg/Tgg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469629	25469629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	198	390	1	ENST00000264709.3:c.1139C>T	p.Ala380Val	p.A380V	ENST00000264709	NM_175629.2	380	gCg/gTg																																																																														
PPARG	0	MSKCC	GRCh37	3	12458638	12458640	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	102	291	0	ENST00000287820.6:c.1258_1260del	p.Ile420del	p.I420del	ENST00000287820	NM_015869.4	419	ATT/-																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	127	213	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
BAP1	0	MSKCC	GRCh37	3	52437206	52437206	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35448940		P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	252	455	2	ENST00000460680.1:c.1838C>T	p.Thr613Met	p.T613M	ENST00000460680	NM_004656.3	613	aCg/aTg																																																																														
GATA2	0	MSKCC	GRCh37	3	128202726	128202726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	45	540	0	ENST00000341105.2:c.994C>T	p.Leu332Phe	p.L332F	ENST00000341105	NM_032638.4	332	Ctc/Ttc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	57	306	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	195	280	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803192	1803192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	31	573	1	ENST00000260795.2:c.544C>A	p.Pro182Thr	p.P182T	ENST00000260795		182	Ccc/Acc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	221	572	5	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	110	264	1	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526366	31526366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	299	730	0	ENST00000344624.3:c.674T>C	p.Leu225Pro	p.L225P	ENST00000344624		225	cTg/cCg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32189003	32189003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	38	543	1	ENST00000375023.3:c.551C>T	p.Pro184Leu	p.P184L	ENST00000375023	NM_004557.3	184	cCg/cTg																																																																														
DAXX	0	MSKCC	GRCh37	6	33288900	33288900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	164	332	0	ENST00000374542.5:c.652C>A	p.Pro218Thr	p.P218T	ENST00000374542	NM_001141970.1	218	Cca/Aca																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	72	363	1	ENST00000237289.4:c.1368delG	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740564	145740564	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	265	535	0	ENST00000428558.2:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000428558	NM_004260.3	485	Cag/Tag																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073707	8073726	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGAGGCCTGTCTTCATCA	TGGGAGGCCTGTCTTCATCA	C			P-0028924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	127	277	0	ENST00000377482.5:c.933_952delinsG	p.Ser311ArgfsTer135	p.S311Rfs*135	ENST00000377482	NM_018948.3	311	agTGATGAAGACAGGCCTCCCAaa/agGaa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061209	38061209	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	107	442	1	ENST00000250448.2:c.780G>C	p.Leu260Phe	p.L260F	ENST00000250448	NM_004496.3	260	ttG/ttC																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	242	413	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	177	547	0	ENST00000269305.4:c.530C>A	p.Pro177His	p.P177H	ENST00000269305	NM_001126112.2	177	cCc/cAc																																																																														
NF1	0	MSKCC	GRCh37	17	29553594	29553594	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	77	247	0	ENST00000358273.4:c.2143G>T	p.Glu715Ter	p.E715*	ENST00000358273	NM_001042492.2	715	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	169	354	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	198	324	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	272	268	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	323	450	0	ENST00000307102.5:c.303_308delGGAGAT	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc																																																																														
CBL	0	MSKCC	GRCh37	11	119169166	119169166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140725852		P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	214	410	0	ENST00000264033.4:c.2350G>A	p.Val784Met	p.V784M	ENST00000264033	NM_005188.3	784	Gtg/Atg																																																																														
DICER1	0	MSKCC	GRCh37	14	95557393	95557393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	213	387	0	ENST00000343455.3:c.5581G>T	p.Glu1861Ter	p.E1861*	ENST00000343455	NM_177438.2	1861	Gaa/Taa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457653	67457653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	395	540	0	ENST00000327367.4:c.463G>A	p.Asp155Asn	p.D155N	ENST00000327367	NM_005902.3	155	Gac/Aac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221280	36221280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	321	599	1	ENST00000222270.7:c.5114G>A	p.Arg1705Gln	p.R1705Q	ENST00000222270	NM_014727.1	1705	cGa/cAa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106526692	106526692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	200	358	0	ENST00000359195.3:c.2985G>T	p.Met995Ile	p.M995I	ENST00000359195	NM_002649.2	995	atG/atT																																																																														
AMER1	0	MSKCC	GRCh37	X	63411438	63411438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	248	605	0	ENST00000330258.3:c.1729C>T	p.Gln577Ter	p.Q577*	ENST00000330258	NM_152424.3	577	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	152	392	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PAX5	0	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	37	443	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986588	36986601	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCTGGCGGCGT	GGGGCTGGCGGCGT	-			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	32	414	0	ENST00000354822.5:c.1088_1101del	p.His363ArgfsTer71	p.H363Rfs*71	ENST00000354822	NM_001079668.2	363	cACGCCGCCAGCCCC/c																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986697	36986710	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCCGCCTGCGC	GCCGCCGCCTGCGC	-			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	12	25	0	ENST00000354822.5:c.979_992del	p.Ala327SerfsTer107	p.A327Sfs*107	ENST00000354822	NM_001079668.2	327	GCGCAGGCGGCGGCa/a																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678332	88678332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	46	485	0	ENST00000360948.2:c.1204G>A	p.Glu402Lys	p.E402K	ENST00000360948	NM_001012338.2	402	Gag/Aag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943809	9943809	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	24	307	0	ENST00000330684.3:c.1132T>A	p.Trp378Arg	p.W378R	ENST00000330684	NM_001134407.1	378	Tgg/Agg																																																																														
TP53	0	MSKCC	GRCh37	17	7578412	7578414	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	88	542	0	ENST00000269305.4:c.516_518del	p.Val173del	p.V173del	ENST00000269305	NM_001126112.2	172	gtTGTg/gtg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11134193	11134193	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	83	357	0	ENST00000344626.4:c.2860-1G>A		p.X954_splice	ENST00000344626	NM_003072.3	954																																																																															
PDCD1LG2	0	MSKCC	GRCh37	9	5534886	5534886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	83	485	0	ENST00000397747.3:c.197C>T	p.Thr66Ile	p.T66I	ENST00000397747	NM_025239.3	66	aCa/aTa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	89	354	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	89	354	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0028931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	136	691	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577525	7577527	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0028931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	27	524	0	ENST00000269305.4:c.754_756del	p.Leu252del	p.L252del	ENST00000269305	NM_001126112.2	252	CTC/-																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	89	354	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
BIRC3	0	MSKCC	GRCh37	11	102206908	102206909	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	86	320	0	ENST00000263464.3:c.1540_1541delCT	p.Leu514AlafsTer4	p.L514Afs*4	ENST00000263464	NM_001165.4	512	aaCTct/aact																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11129647	11129647	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	122	491	0	ENST00000344626.4:c.2453G>A	p.Trp818Ter	p.W818*	ENST00000344626	NM_003072.3	818	tGg/tAg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264788	46264788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	54	411	0	ENST00000371998.3:c.1658A>G	p.Asn553Ser	p.N553S	ENST00000371998		553	aAt/aGt																																																																														
SDHA	0	MSKCC	GRCh37	5	218484	218484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	48	176	0	ENST00000264932.6:c.14G>C	p.Arg5Pro	p.R5P	ENST00000264932	NM_004168.2	5	cGg/cCg																																																																														
KMT2C	0	MSKCC	GRCh37	7	152132738	152132738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	20	295	0	ENST00000262189.6:c.134C>T	p.Ala45Val	p.A45V	ENST00000262189	NM_170606.2	45	gCt/gTt																																																																														
EZH2	0	MSKCC	GRCh37	7	148508727	148508727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	151	368	2	ENST00000320356.2:c.1937A>G	p.Tyr646Cys	p.Y646C	ENST00000320356	NM_004456.4	646	tAc/tGc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911607	114911607	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	208	540	0	ENST00000543371.1:c.1125A>T	p.Lys375Asn	p.K375N	ENST00000543371	NM_001198531.1	375	aaA/aaT																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38172260	38172260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	278	387	0	ENST00000317025.8:c.2147C>T	p.Pro716Leu	p.P716L	ENST00000317025	NM_023034.1	716	cCt/cTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	48	426	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
FLCN	0	MSKCC	GRCh37	17	17117129	17117129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	48	459	1	ENST00000285071.4:c.1580G>A	p.Arg527Gln	p.R527Q	ENST00000285071	NM_144997.5	527	cGa/cAa																																																																														
RBM10	0	MSKCC	GRCh37	X	47045473	47045476	+	frameshift_variant	Frame_Shift_Del	DEL	TACC	TACC	-			P-0028936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	71	472	0	ENST00000329236.7:c.2206_2209del	p.Tyr736GlyfsTer32	p.Y736Gfs*32	ENST00000329236	NM_001204466.1	736	TACCgg/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	61	623	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	27	277	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0028937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	40	357	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
GLI1	0	MSKCC	GRCh37	12	57859478	57859478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0028937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	56	510	0	ENST00000228682.2:c.623A>C	p.Gln208Pro	p.Q208P	ENST00000228682	NM_005269.2	208	cAg/cCg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55140758	55140758	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	61	468	0	ENST00000257290.5:c.1619T>A	p.Ile540Asn	p.I540N	ENST00000257290	NM_006206.4	540	aTc/aAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	198	659	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	273	525	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577591	7577591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	167	580	0	ENST00000269305.4:c.690del	p.Thr231ProfsTer16	p.T231Pfs*16	ENST00000269305	NM_001126112.2	230	acC/ac																																																																														
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	76	719	0	ENST00000269305.4:c.614A>C	p.Tyr205Ser	p.Y205S	ENST00000269305	NM_001126112.2	205	tAt/tCt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106915	27106915	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	151	411	0	ENST00000324856.7:c.6526C>T	p.Gln2176Ter	p.Q2176*	ENST00000324856	NM_006015.4	2176	Cag/Tag																																																																														
SDHB	0	MSKCC	GRCh37	1	17355219	17355219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	44	426	0	ENST00000375499.3:c.299C>T	p.Ser100Phe	p.S100F	ENST00000375499	NM_003000.2	100	tCt/tTt																																																																														
ARID5B	0	MSKCC	GRCh37	10	63661961	63661961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	121	390	0	ENST00000279873.7:c.65A>T	p.Tyr22Phe	p.Y22F	ENST00000279873	NM_032199.2	22	tAc/tTc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103518211	103518211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	25	310	0	ENST00000355739.4:c.2149G>T	p.Ala717Ser	p.A717S	ENST00000355739	NM_000123.3	717	Gct/Tct																																																																														
IRS2	0	MSKCC	GRCh37	13	110438216	110438216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	84	172	1	ENST00000375856.3:c.185C>A	p.Ala62Glu	p.A62E	ENST00000375856	NM_003749.2	62	gCg/gAg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43724513	43724513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	248	907	0	ENST00000382044.4:c.3554A>G	p.Gln1185Arg	p.Q1185R	ENST00000382044	NM_001141980.1	1185	cAg/cGg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858447	9858447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	93	470	0	ENST00000330684.3:c.2954C>A	p.Pro985His	p.P985H	ENST00000330684	NM_001134407.1	985	cCt/cAt																																																																														
CTCF	0	MSKCC	GRCh37	16	67644758	67644758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	159	526	0	ENST00000264010.4:c.24del	p.Ile9LeufsTer53	p.I9Lfs*53	ENST00000264010	NM_006565.3	8	gCc/gc																																																																														
CDH1	0	MSKCC	GRCh37	16	68835795	68835798	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AGGT	AGGT	-			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	43	499	0	ENST00000261769.5:c.387_387+3del		p.X129_splice	ENST00000261769	NM_004360.3	129																																																																															
FLCN	0	MSKCC	GRCh37	17	17131409	17131409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	151	605	1	ENST00000285071.4:c.43G>T	p.Gly15Cys	p.G15C	ENST00000285071	NM_144997.5	15	Ggc/Tgc																																																																														
SOX9	0	MSKCC	GRCh37	17	70119695	70119695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	60	741	0	ENST00000245479.2:c.697G>T	p.Gly233Cys	p.G233C	ENST00000245479	NM_000346.3	233	Ggc/Tgc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212295800	212295800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	95	487	0	ENST00000342788.4:c.2513G>T	p.Arg838Leu	p.R838L	ENST00000342788	NM_005235.2	838	cGa/cTa																																																																														
IRS1	0	MSKCC	GRCh37	2	227661111	227661111	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	134	640	0	ENST00000305123.5:c.2344G>T	p.Glu782Ter	p.E782*	ENST00000305123	NM_005544.2	782	Gag/Tag																																																																														
SRC	0	MSKCC	GRCh37	20	36022674	36022674	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	79	551	0	ENST00000358208.4:c.547A>T	p.Thr183Ser	p.T183S	ENST00000358208		183	Acg/Tcg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827904	40827904	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	144	528	0	ENST00000373198.4:c.2524A>C	p.Ser842Arg	p.S842R	ENST00000373198	NM_133170.3	842	Agt/Cgt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66230906	66230906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	20	275	0	ENST00000273854.3:c.2065G>T	p.Val689Phe	p.V689F	ENST00000273854	NM_004439.5	689	Gtt/Ttt																																																																														
FAT1	0	MSKCC	GRCh37	4	187524759	187524759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	104	597	1	ENST00000441802.2:c.10921C>A	p.His3641Asn	p.H3641N	ENST00000441802	NM_005245.3	3641	Cac/Aac																																																																														
FAT1	0	MSKCC	GRCh37	4	187554975	187554975	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	34	231	0	ENST00000441802.2:c.4186G>A	p.Gly1396Ser	p.G1396S	ENST00000441802	NM_005245.3	1396	Ggc/Agc																																																																														
ETV1	0	MSKCC	GRCh37	7	13946192	13946192	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	46	490	2	ENST00000405192.2:c.904G>T	p.Glu302Ter	p.E302*	ENST00000405192	NM_001163147.1	302	Gaa/Taa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528699	8528699	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	73	350	1	ENST00000356435.5:c.433A>T	p.Met145Leu	p.M145L	ENST00000356435		145	Atg/Ttg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87635161	87635161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	101	402	0	ENST00000277120.3:c.2213C>T	p.Pro738Leu	p.P738L	ENST00000277120		738	cCa/cTa																																																																														
XIAP	0	MSKCC	GRCh37	X	123019994	123019994	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	113	365	0	ENST00000355640.3:c.482A>G	p.Tyr161Cys	p.Y161C	ENST00000355640		161	tAt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	418	400	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	223	474	0	ENST00000269305.4:c.681dup	p.Asp228Ter	p.D228*	ENST00000269305	NM_001126112.2	227	-/T																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699294	117699294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	40	354	0	ENST00000369458.3:c.347G>A	p.Arg116Gln	p.R116Q	ENST00000369458	NM_024626.3	116	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	308	425	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	129	399	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																														
INHBA	0	MSKCC	GRCh37	7	41739594	41739594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	390	370	0	ENST00000242208.4:c.379G>T	p.Ala127Ser	p.A127S	ENST00000242208	NM_002192.2	127	Gcc/Tcc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101631	27101631	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	267	763	0	ENST00000324856.7:c.4913del	p.Asp1638ValfsTer16	p.D1638Vfs*16	ENST00000324856	NM_006015.4	1638	gAt/gt																																																																														
RET	0	MSKCC	GRCh37	10	43602018	43602018	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	192	598	0	ENST00000355710.3:c.1062T>A	p.Tyr354Ter	p.Y354*	ENST00000355710	NM_020975.4	354	taT/taA																																																																														
ATM	0	MSKCC	GRCh37	11	108205835	108205835	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	267	370	0	ENST00000278616.4:c.8150A>C	p.Lys2717Thr	p.K2717T	ENST00000278616	NM_000051.3	2717	aAg/aCg																																																																														
POLE	0	MSKCC	GRCh37	12	133263869	133263870	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	142	355	0	ENST00000320574.5:c.32_33del	p.Ala11GlyfsTer12	p.A11Gfs*12	ENST00000320574	NM_006231.2	11	gCG/g																																																																														
TSHR	0	MSKCC	GRCh37	14	81609706	81609706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	474	423	0	ENST00000298171.2:c.1304T>C	p.Val435Ala	p.V435A	ENST00000298171	NM_000369.2	435	gTc/gCc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78867572	78867572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	246	600	0	ENST00000306801.3:c.2308G>T	p.Gly770Cys	p.G770C	ENST00000306801	NM_020761.2	770	Ggc/Tgc																																																																														
STK11	0	MSKCC	GRCh37	19	1221298	1221308	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCGGGCGAC	TCCCGGGCGAC	-			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	610	614	0	ENST00000326873.7:c.822_832del	p.Ile274MetfsTer7	p.I274Mfs*7	ENST00000326873	NM_000455.4	274	aTCCCGGGCGAC/a																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390204	89390204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	222	321	0	ENST00000336596.2:c.953N>A	p.Pro318Gln	p.P318Q	ENST00000336596	NM_005233.5	318	cCa/cAa																																																																														
FAT1	0	MSKCC	GRCh37	4	187540161	187540161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	169	466	1	ENST00000441802.2:c.7579G>C	p.Val2527Leu	p.V2527L	ENST00000441802	NM_005245.3	2527	Gtt/Ctt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589225	67589225	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	277	373	0	ENST00000274335.5:c.1213A>G	p.Ile405Val	p.I405V	ENST00000274335		405	Ata/Gta																																																																														
HGF	0	MSKCC	GRCh37	7	81346551	81346551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	214	310	2	ENST00000222390.5:c.1402C>A	p.Arg468Ser	p.R468S	ENST00000222390	NM_000601.4	468	Cgt/Agt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730915	40730915	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AG			P-0028944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	248	487	0	ENST00000373198.4:c.3620delinsCT	p.Arg1207ProfsTer17	p.R1207Pfs*17	ENST00000373198	NM_133170.3	1207	cGt/cCTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	496	696	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ATRX	0	MSKCC	GRCh37	X	76855917	76855962	+	frameshift_variant	Frame_Shift_Del	DEL	TAATGTAGTCTAGCTGCAAACACCAAGGATGAGTCCATATTCTACT	TAATGTAGTCTAGCTGCAAACACCAAGGATGAGTCCATATTCTACT	-			P-0028946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	134	471	0	ENST00000373344.5:c.5638_5683del	p.Ser1880AlafsTer17	p.S1880Afs*17	ENST00000373344	NM_000489.3	1880	AGTAGAATATGGACTCATCCTTGGTGTTTGCAGCTAGACTACATTAgc/gc																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0028947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	118	739	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																														
DDR2	0	MSKCC	GRCh37	1	162745529	162745529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	26	491	0	ENST00000367921.3:c.1944C>A	p.Asp648Glu	p.D648E	ENST00000367921	NM_006182.2	648	gaC/gaA																																																																														
MET	0	MSKCC	GRCh37	7	116340276	116340276	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	33	306	0	ENST00000397752.3:c.1142del	p.Asn381ThrfsTer3	p.N381Tfs*3	ENST00000397752	NM_000245.2	380	Aaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0028949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	393	623	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	207	256	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
ALK	0	MSKCC	GRCh37	2	30143128	30143128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	155	666	1	ENST00000389048.3:c.398G>A	p.Arg133His	p.R133H	ENST00000389048	NM_004304.4	133	cGc/cAc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878455	151878455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	204	663	0	ENST00000262189.6:c.6490G>A	p.Gly2164Arg	p.G2164R	ENST00000262189	NM_170606.2	2164	Gga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	121	502	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	76	720	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974696	21974696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	38	450	0	ENST00000304494.5:c.131del	p.Tyr44SerfsTer9	p.Y44Sfs*9	ENST00000304494	NM_000077.4	44	tAc/tc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974696	21974696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	38	450	0	ENST00000304494.5:c.131del	p.Tyr44SerfsTer9	p.Y44Sfs*9	ENST00000304494	NM_000077.4	44	tAc/tc																																																																														
CUL3	0	MSKCC	GRCh37	2	225362481	225362481	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	46	377	0	ENST00000264414.4:c.1696C>A	p.Pro566Thr	p.P566T	ENST00000264414	NM_003590.4	566	Cca/Aca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	130	418	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	62	461	0				ENST00000310581	NM_198253.2																																																																																
RRAGC	0	MSKCC	GRCh37	1	39321525	39321525	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	123	512	0	ENST00000373001.3:c.496A>G	p.Lys166Glu	p.K166E	ENST00000373001	NM_022157.3	166	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578443	7578444	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0028953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	41	715	0	ENST00000269305.4:c.486_487delinsTA	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	162	atCTac/atTAac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0028956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	28	466	2	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
EGFR	0	MSKCC	GRCh37	7	55242467	55242484	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAACAT	AATTAAGAGAAGCAACAT	-			P-0028958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	93	484	0	ENST00000275493.2:c.2237_2254del	p.Glu746_Ser752delinsAla	p.E746_S752delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATct/gct																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0028958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	92	287	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	260	405	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	561	499	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
TMEM127	0	MSKCC	GRCh37	2	96919665	96919665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200351681		P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	266	372	0	ENST00000258439.3:c.598C>T	p.Pro200Ser	p.P200S	ENST00000258439	NM_001193304.2	200	Ccc/Tcc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212252712	212252712	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	132	258	0	ENST00000342788.4:c.3141A>T	p.Glu1047Asp	p.E1047D	ENST00000342788	NM_005235.2	1047	gaA/gaT																																																																														
IRS1	0	MSKCC	GRCh37	2	227660741	227660741	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	224	615	0	ENST00000305123.5:c.2714A>T	p.Gln905Leu	p.Q905L	ENST00000305123	NM_005544.2	905	cAg/cTg																																																																														
WWTR1	0	MSKCC	GRCh37	3	149245658	149245658	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	507	713	0	ENST00000360632.3:c.870del	p.Ile291SerfsTer28	p.I291Sfs*28	ENST00000360632	NM_015472.4	290	tcC/tc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151933020	151933020	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	84	108	0	ENST00000262189.6:c.2653-2A>T		p.X885_splice	ENST00000262189	NM_170606.2	885																																																																															
NBN	0	MSKCC	GRCh37	8	90967752	90967752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	56	195	0	ENST00000265433.3:c.1156G>A	p.Val386Ile	p.V386I	ENST00000265433	NM_002485.4	386	Gtc/Atc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518043	8518043	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	126	341	0	ENST00000356435.5:c.1348G>T	p.Gly450Ter	p.G450*	ENST00000356435		450	Gga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66766352	66766352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	46	114	0	ENST00000374690.3:c.1364G>C	p.Gly455Ala	p.G455A	ENST00000374690	NM_000044.3	455	gGt/gCt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	90	407	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	227	526	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	69	361	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
SETD2	0	MSKCC	GRCh37	3	47164928	47164928	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	38	237	1	ENST00000409792.3:c.1198C>T	p.Arg400Ter	p.R400*	ENST00000409792	NM_014159.6	400	Cga/Tga																																																																														
SMO	0	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	10	24	0	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																														
SOS1	0	MSKCC	GRCh37	2	39251184	39251185	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	53	473	1	ENST00000402219.2:c.1168dup	p.Ile390AsnfsTer4	p.I390Nfs*4	ENST00000402219	NM_005633.3	390	ata/aAta																																																																														
PTPN11	0	MSKCC	GRCh37	12	112910791	112910791	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	84	433	0	ENST00000351677.2:c.800A>T	p.Glu267Val	p.E267V	ENST00000351677	NM_002834.3	267	gAg/gTg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576153	88576153	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140370971		P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	120	542	0	ENST00000360948.2:c.1520G>A	p.Arg507His	p.R507H	ENST00000360948	NM_001012338.2	507	cGc/cAc																																																																														
PREX2	0	MSKCC	GRCh37	8	69104637	69104637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	100	506	2	ENST00000288368.4:c.4481G>A	p.Arg1494His	p.R1494H	ENST00000288368	NM_024870.2	1494	cGc/cAc																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2492096	2492097	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	254	730	1	ENST00000355716.4:c.500dupC	p.Thr169AspfsTer65	p.T169Dfs*65	ENST00000355716	NM_003820.2	165	tgc/tgCc																																																																														
MTOR	0	MSKCC	GRCh37	1	11188177	11188177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	49	456	0	ENST00000361445.4:c.5917A>G	p.Ile1973Val	p.I1973V	ENST00000361445	NM_004958.3	1973	Atc/Gtc																																																																														
SPEN	0	MSKCC	GRCh37	1	16247420	16247420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	183	353	0	ENST00000375759.3:c.1691A>G	p.Tyr564Cys	p.Y564C	ENST00000375759	NM_015001.2	564	tAt/tGt																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366987	40366987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	283	646	5	ENST00000397332.2:c.210del	p.Thr71ArgfsTer69	p.T71Rfs*69	ENST00000397332	NM_001033082.2	70	ccC/cc																																																																														
MPL	0	MSKCC	GRCh37	1	43804952	43804953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	79	363	0	ENST00000372470.3:c.408dup	p.Ser137GlnfsTer27	p.S137Qfs*27	ENST00000372470	NM_005373.2	134	-/C																																																																														
JUN	0	MSKCC	GRCh37	1	59248118	59248120	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	75	165	0	ENST00000371222.2:c.623_625del	p.Pro208del	p.P208del	ENST00000371222	NM_002228.3	208	cCGCac/cac																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120464955	120464955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	58	540	0	ENST00000256646.2:c.5117A>G	p.His1706Arg	p.H1706R	ENST00000256646	NM_024408.3	1706	cAt/cGt																																																																														
RIT1	0	MSKCC	GRCh37	1	155880271	155880271	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	253	489	0	ENST00000368323.3:c.133C>T	p.Arg45Ter	p.R45*	ENST00000368323	NM_006912.5	45	Cga/Tga																																																																														
IKBKE	0	MSKCC	GRCh37	1	206667323	206667323	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	255	602	1	ENST00000367120.3:c.2116C>T	p.Arg706Trp	p.R706W	ENST00000367120	NM_014002.3	706	Cgg/Tgg																																																																														
PARP1	0	MSKCC	GRCh37	1	226573330	226573330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	180	512	1	ENST00000366794.5:c.886G>A	p.Glu296Lys	p.E296K	ENST00000366794	NM_001618.3	296	Gag/Aag																																																																														
RET	0	MSKCC	GRCh37	10	43597885	43597885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	312	866	1	ENST00000355710.3:c.433G>A	p.Val145Ile	p.V145I	ENST00000355710	NM_020975.4	145	Gta/Ata																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	65	276	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																														
PGR	0	MSKCC	GRCh37	11	100912739	100912739	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	210	496	1	ENST00000325455.5:c.2583del	p.Gly862GlufsTer31	p.G862Efs*31	ENST00000325455	NM_001202474.3	861	aaA/aa																																																																														
YAP1	0	MSKCC	GRCh37	11	101981613	101981614	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	56	145	0	ENST00000282441.5:c.40dup	p.Gln14ProfsTer98	p.Q14Pfs*98	ENST00000282441	NM_001130145.2	12	gcc/gCcc																																																																														
ATM	0	MSKCC	GRCh37	11	108150265	108150265	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	154	402	0	ENST00000278616.4:c.3332T>G	p.Leu1111Arg	p.L1111R	ENST00000278616	NM_000051.3	1111	cTt/cGt																																																																														
CHEK1	0	MSKCC	GRCh37	11	125505403	125505404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	184	345	0	ENST00000428830.2:c.700dup	p.Ile234AsnfsTer11	p.I234Nfs*11	ENST00000428830	NM_001114121.2	231	-/A																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438740	49438740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	230	643	0	ENST00000301067.7:c.4750T>C	p.Tyr1584His	p.Y1584H	ENST00000301067	NM_003482.3	1584	Tac/Cac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	208	810	1	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856434	111856434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	66	217	2	ENST00000341259.2:c.489delC	p.Thr165ProfsTer32	p.T165Pfs*32	ENST00000341259	NM_005475.2	162	gCc/gc																																																																														
POLE	0	MSKCC	GRCh37	12	133202765	133202765	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	55	627	0	ENST00000320574.5:c.6469A>G	p.Ile2157Val	p.I2157V	ENST00000320574	NM_006231.2	2157	Atc/Gtc																																																																														
FLT3	0	MSKCC	GRCh37	13	28609744	28609744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	314	641	0	ENST00000241453.7:c.1485G>T	p.Trp495Cys	p.W495C	ENST00000241453	NM_004119.2	495	tgG/tgT																																																																														
FLT1	0	MSKCC	GRCh37	13	28895700	28895700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	267	530	0	ENST00000282397.4:c.3074C>T	p.Ala1025Val	p.A1025V	ENST00000282397	NM_002019.4	1025	gCg/gTg																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281758	49281758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	273	762	4	ENST00000282018.3:c.805G>A	p.Val269Ile	p.V269I	ENST00000282018	NM_020377.2	269	Gtc/Atc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	188	662	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	222	352	1	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																														
B2M	0	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	20	261	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	149	438	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
IGF1R	0	MSKCC	GRCh37	15	99500333	99500333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	119	678	0	ENST00000268035.6:c.3766A>G	p.Arg1256Gly	p.R1256G	ENST00000268035	NM_000875.3	1256	Agg/Ggg																																																																														
TSC2	0	MSKCC	GRCh37	16	2126097	2126097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	293	796	0	ENST00000219476.3:c.2668C>A	p.His890Asn	p.H890N	ENST00000219476	NM_000548.3	890	Cat/Aat																																																																														
TSC2	0	MSKCC	GRCh37	16	2134442	2134442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	341	797	1	ENST00000219476.3:c.4219G>A	p.Val1407Met	p.V1407M	ENST00000219476	NM_000548.3	1407	Gtg/Atg																																																																														
TSC2	0	MSKCC	GRCh37	16	2138239	2138239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	237	768	0	ENST00000219476.3:c.5172G>T	p.Gln1724His	p.Q1724H	ENST00000219476	NM_000548.3	1724	caG/caT																																																																														
TRAF7	0	MSKCC	GRCh37	16	2225116	2225116	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	322	776	0	ENST00000326181.6:c.1351A>G	p.Lys451Glu	p.K451E	ENST00000326181	NM_032271.2	451	Aaa/Gaa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646980	23646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1060502767		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	291	654	1	ENST00000261584.4:c.886dup	p.Met296AsnfsTer7	p.M296Nfs*7	ENST00000261584	NM_024675.3	296	atg/aAtg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	97	326	5	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	227	680	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	257	627	0	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	212	655	2	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532465	63532465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	279	685	0	ENST00000307078.5:c.2114C>T	p.Ala705Val	p.A705V	ENST00000307078	NM_004655.3	705	gCt/gTt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	277	728	8	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120376	70120377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	384	920	0	ENST00000245479.2:c.1380dup	p.Gly461ArgfsTer117	p.G461Rfs*117	ENST00000245479	NM_000346.3	460	acc/aCcc																																																																														
TCF3	0	MSKCC	GRCh37	19	1615697	1615698	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	229	772	2	ENST00000344749.5:c.1573dup	p.Arg525ProfsTer28	p.R525Pfs*28	ENST00000344749	NM_001136139.2	525	cgg/cCgg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152115	11152115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	265	643	0	ENST00000344626.4:c.4303G>A	p.Asp1435Asn	p.D1435N	ENST00000344626	NM_003072.3	1435	Gac/Aac																																																																														
UPF1	0	MSKCC	GRCh37	19	18975016	18975016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	219	476	0	ENST00000262803.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000262803	NM_002911.3	938	cGg/cAg																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	164	622	1	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																														
CD79A	0	MSKCC	GRCh37	19	42383185	42383185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	297	682	1	ENST00000221972.3:c.205G>A	p.Val69Ile	p.V69I	ENST00000221972	NM_021601.3	69	Gtc/Atc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	175	456	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
CIC	0	MSKCC	GRCh37	19	42794424	42794424	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	204	863	0	ENST00000575354.2:c.1504T>A	p.Ser502Thr	p.S502T	ENST00000575354	NM_015125.3	502	Tcc/Acc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867277	45867277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	241	737	0	ENST00000391945.4:c.916G>A	p.Ala306Thr	p.A306T	ENST00000391945	NM_000400.3	306	Gcc/Acc																																																																														
POLD1	0	MSKCC	GRCh37	19	50905983	50905983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	262	745	0	ENST00000440232.2:c.955T>C	p.Cys319Arg	p.C319R	ENST00000440232	NM_002691.3	319	Tgc/Cgc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46587776	46587776	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	194	401	0	ENST00000263734.3:c.455-1G>T		p.X152_splice	ENST00000263734	NM_001430.4	152																																																																															
ACVR1	0	MSKCC	GRCh37	2	158636987	158636987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	230	569	0	ENST00000263640.3:c.193G>A	p.Val65Ile	p.V65I	ENST00000263640	NM_001105.4	65	Gtc/Atc																																																																														
PMS1	0	MSKCC	GRCh37	2	190719224	190719224	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	172	310	0	ENST00000441310.2:c.1226A>G	p.His409Arg	p.H409R	ENST00000441310	NM_000534.4	409	cAc/cGc																																																																														
IRS1	0	MSKCC	GRCh37	2	227660244	227660244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	216	723	1	ENST00000305123.5:c.3211G>A	p.Ala1071Thr	p.A1071T	ENST00000305123	NM_005544.2	1071	Gcc/Acc																																																																														
RAF1	0	MSKCC	GRCh37	3	12660190	12660190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	243	488	0	ENST00000251849.4:c.31A>G	p.Ile11Val	p.I11V	ENST00000251849	NM_002880.3	11	Atc/Gtc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391075	89391075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	50	660	1	ENST00000336596.2:c.1141C>T	p.Arg381Cys	p.R381C	ENST00000336596	NM_005233.5	381	Cgc/Tgc																																																																														
ATR	0	MSKCC	GRCh37	3	142285028	142285028	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	43	528	1	ENST00000350721.4:c.227T>A	p.Met76Lys	p.M76K	ENST00000350721	NM_001184.3	76	aTg/aAg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178919087	178919089	+	inframe_deletion	In_Frame_Del	DEL	TAG	TAG	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	137	234	0	ENST00000263967.3:c.573_575del	p.Ile191_Val192delinsMet	p.I191_V192delinsM	ENST00000263967	NM_006218.2	191	aTAGtg/atg																																																																														
SOX2	0	MSKCC	GRCh37	3	181430206	181430208	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	134	325	3	ENST00000325404.1:c.67_69del	p.Gly23del	p.G23del	ENST00000325404	NM_003106.3	20	GGC/-																																																																														
SOX2	0	MSKCC	GRCh37	3	181430410	181430410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	269	676	2	ENST00000325404.1:c.262C>T	p.Arg88Trp	p.R88W	ENST00000325404	NM_003106.3	88	Cgg/Tgg																																																																														
BCL6	0	MSKCC	GRCh37	3	187447714	187447714	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138532510		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	248	594	0	ENST00000232014.4:c.479G>A	p.Arg160His	p.R160H	ENST00000232014	NM_001130845.1	160	cGt/cAt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127462	55127462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	229	586	0	ENST00000257290.5:c.250G>A	p.Val84Ile	p.V84I	ENST00000257290	NM_006206.4	84	Gtc/Atc																																																																														
FAT1	0	MSKCC	GRCh37	4	187557273	187557273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	49	594	1	ENST00000441802.2:c.4089del	p.Phe1363LeufsTer5	p.F1363Lfs*5	ENST00000441802	NM_005245.3	1363	ttT/tt																																																																														
SDHA	0	MSKCC	GRCh37	5	228381	228381	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	109	470	0	ENST00000264932.6:c.703A>G	p.Ile235Val	p.I235V	ENST00000264932	NM_004168.2	235	Atc/Gtc																																																																														
SDHA	0	MSKCC	GRCh37	5	256506	256506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	46	356	0	ENST00000264932.6:c.1966A>G	p.Thr656Ala	p.T656A	ENST00000264932	NM_004168.2	656	Acc/Gcc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31410924	31410924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	79	699	0	ENST00000344624.3:c.3596A>G	p.Tyr1199Cys	p.Y1199C	ENST00000344624		1199	tAc/tGc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	184	484	7	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	264	534	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
MSH3	0	MSKCC	GRCh37	5	80024669	80024669	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	173	316	0	ENST00000265081.6:c.1454-1G>T		p.X485_splice	ENST00000265081	NM_002439.4	485																																																																															
RAD50	0	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	188	291	3	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																														
FLT4	0	MSKCC	GRCh37	5	180048557	180048557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	39	578	0	ENST00000261937.6:c.2005T>C	p.Tyr669His	p.Y669H	ENST00000261937	NM_182925.4	669	Tac/Cac																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911072	29911072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	188	736	0	ENST00000376809.5:c.371G>A	p.Gly124Asp	p.G124D	ENST00000376809	NM_002116.7	124	gGc/gAc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956526	93956526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	131	291	0	ENST00000369303.4:c.2710C>A	p.Leu904Met	p.L904M	ENST00000369303	NM_004440.3	904	Ctg/Atg																																																																														
PRDM1	0	MSKCC	GRCh37	6	106555345	106555345	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	190	453	0	ENST00000369096.4:c.2462A>G	p.Glu821Gly	p.E821G	ENST00000369096	NM_001198.3	821	gAa/gGa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100021	157100021	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201842850		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	37	179	0	ENST00000346085.5:c.958A>G	p.Ser320Gly	p.S320G	ENST00000346085	NM_020732.3	320	Agc/Ggc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157521939	157521939	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	67	544	0	ENST00000346085.5:c.4211A>G	p.Tyr1404Cys	p.Y1404C	ENST00000346085	NM_020732.3	1404	tAc/tGc																																																																														
ETV1	0	MSKCC	GRCh37	7	13935496	13935496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	49	302	0	ENST00000405192.2:c.1360T>C	p.Tyr454His	p.Y454H	ENST00000405192	NM_001163147.1	454	Tat/Cat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	208	416	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SOX17	0	MSKCC	GRCh37	8	55370961	55370961	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	706	670	0	ENST00000297316.4:c.263A>G	p.Gln88Arg	p.Q88R	ENST00000297316	NM_022454.3	88	cAg/cGg																																																																														
SOX17	0	MSKCC	GRCh37	8	55372068	55372068	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	173	488	0	ENST00000297316.4:c.758A>G	p.Tyr253Cys	p.Y253C	ENST00000297316	NM_022454.3	253	tAc/tGc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964346	70964346	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	99	368	0	ENST00000276594.2:c.1682T>G	p.Phe561Cys	p.F561C	ENST00000276594	NM_024504.3	561	tTc/tGc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8319959	8319959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	122	232	0	ENST00000356435.5:c.5542G>A	p.Val1848Ile	p.V1848I	ENST00000356435		1848	Gtt/Att																																																																														
PTCH1	0	MSKCC	GRCh37	9	98218617	98218617	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202052415		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	35	508	0	ENST00000331920.6:c.3247G>A	p.Val1083Met	p.V1083M	ENST00000331920	NM_000264.3	1083	Gtg/Atg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391706	139391706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	336	793	1	ENST00000277541.6:c.6485G>A	p.Ser2162Asn	p.S2162N	ENST00000277541	NM_017617.3	2162	aGc/aAc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53245295	53245295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	224	707	0	ENST00000375401.3:c.742C>A	p.Leu248Met	p.L248M	ENST00000375401	NM_004187.3	248	Ctg/Atg																																																																														
AMER1	0	MSKCC	GRCh37	X	63411071	63411071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	233	572	0	ENST00000330258.3:c.2096G>A	p.Arg699His	p.R699H	ENST00000330258	NM_152424.3	699	cGt/cAt																																																																														
MED12	0	MSKCC	GRCh37	X	70361116	70361121	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	119	465	0	ENST00000374080.3:c.6315_6320delACAGCA	p.Gln2114_Gln2115del	p.Q2114_Q2115del	ENST00000374080		2102	CAGCAA/-																																																																														
ATRX	0	MSKCC	GRCh37	X	76937603	76937603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	135	310	0	ENST00000373344.5:c.3145del	p.Ile1049Ter	p.I1049*	ENST00000373344	NM_000489.3	1049	Ata/ta																																																																														
ATRX	0	MSKCC	GRCh37	X	76949320	76949320	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	164	304	0	ENST00000373344.5:c.477del	p.Lys159AsnfsTer11	p.K159Nfs*11	ENST00000373344	NM_000489.3	159	aaA/aa																																																																														
XIAP	0	MSKCC	GRCh37	X	123034426	123034427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	173	445	0	ENST00000355640.3:c.1189dup	p.Ile397AsnfsTer9	p.I397Nfs*9	ENST00000355640		395	gaa/gAaa																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123480553	123480553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	197	628	0	ENST00000371139.4:c.61C>T	p.Leu21Phe	p.L21F	ENST00000371139	NM_001114937.2	21	Ctt/Ttt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0028979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	250	632	12	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	291	556	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	106	369	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584572	48584572	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	263	450	0	ENST00000342988.3:c.745C>T	p.Gln249Ter	p.Q249*	ENST00000342988	NM_005359.5	249	Cag/Tag																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31368254	31368254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	684	583	0	ENST00000328111.2:c.125G>A	p.Arg42His	p.R42H	ENST00000328111	NM_006892.3	42	cGc/cAc																																																																														
CSDE1	0	MSKCC	GRCh37	1	115266569	115266569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	203	589	0	ENST00000438362.2:c.1946G>A	p.Arg649His	p.R649H	ENST00000438362	NM_001242891.1	649	cGc/cAc																																																																														
FGF3	0	MSKCC	GRCh37	11	69631098	69631098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	236	556	0	ENST00000334134.2:c.314T>C	p.Leu105Pro	p.L105P	ENST00000334134	NM_005247.2	105	cTc/cCc																																																																														
STAG2	0	MSKCC	GRCh37	X	123182915	123182915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	67	316	1	ENST00000218089.9:c.880G>T	p.Val294Leu	p.V294L	ENST00000218089	NM_001042749.1	294	Gta/Tta																																																																														
TP53	0	MSKCC	GRCh37	17	7578471	7578471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	1733	718	0	ENST00000269305.4:c.459delC	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	153	ccC/cc																																																																														
PARK2	0	MSKCC	GRCh37	6	161781213	161781213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	199	513	0	ENST00000366898.1:c.1192G>A	p.Ala398Thr	p.A398T	ENST00000366898	NM_004562.2	398	Gcc/Acc																																																																														
NRAS	0	MSKCC	GRCh37	1	115256463	115256463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	21	511	0	ENST00000369535.4:c.248C>A	p.Ala83Asp	p.A83D	ENST00000369535	NM_002524.4	83	gCc/gAc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120483237	120483237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	199	425	0	ENST00000256646.2:c.3124G>A	p.Asp1042Asn	p.D1042N	ENST00000256646	NM_024408.3	1042	Gat/Aat																																																																														
RET	0	MSKCC	GRCh37	10	43595959	43595960	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1536	472	756	1	ENST00000355710.3:c.126_127delinsAA	p.Asp43Asn	p.D43N	ENST00000355710	NM_020975.4	42	gtGGac/gtAAac																																																																														
RET	0	MSKCC	GRCh37	10	43596079	43596079	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	461	683	0	ENST00000355710.3:c.246G>C	p.Glu82Asp	p.E82D	ENST00000355710	NM_020975.4	82	gaG/gaC																																																																														
ASXL1	0	MSKCC	GRCh37	20	30956859	30956859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	82	500	0	ENST00000375687.4:c.185C>A	p.Ser62Tyr	p.S62Y	ENST00000375687	NM_015338.5	62	tCc/tAc																																																																														
APC	0	MSKCC	GRCh37	5	112179624	112179624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	244	407	1	ENST00000257430.4:c.8333C>T	p.Ala2778Val	p.A2778V	ENST00000257430	NM_000038.5	2778	gCt/gTt																																																																														
AGO2	0	MSKCC	GRCh37	8	141582966	141582966	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	422	694	0	ENST00000220592.5:c.281T>C	p.Phe94Ser	p.F94S	ENST00000220592	NM_012154.3	94	tTt/tCt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	445	540	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	1405	637	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521711	89521711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	347	413	2	ENST00000336596.2:c.2788G>A	p.Glu930Lys	p.E930K	ENST00000336596	NM_005233.5	930	Gaa/Aaa																																																																														
TET1	0	MSKCC	GRCh37	10	70333143	70333143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	262	530	1	ENST00000373644.4:c.1048G>A	p.Glu350Lys	p.E350K	ENST00000373644	NM_030625.2	350	Gaa/Aaa																																																																														
YES1	0	MSKCC	GRCh37	18	743272	743272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188857712		P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	209	636	0	ENST00000314574.4:c.868G>A	p.Glu290Lys	p.E290K	ENST00000314574	NM_005433.3	290	Gaa/Aaa																																																																														
ERG	0	MSKCC	GRCh37	21	39755449	39755449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	394	480	1	ENST00000288319.7:c.1316C>T	p.Pro439Leu	p.P439L	ENST00000288319	NM_182918.3	439	cCc/cTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790129	40790129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	459	533	1	ENST00000373198.4:c.2602C>T	p.Pro868Ser	p.P868S	ENST00000373198	NM_133170.3	868	Ccc/Tcc																																																																														
ARAF	0	MSKCC	GRCh37	X	47422634	47422634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	451	259	1	ENST00000377045.4:c.106C>T	p.Arg36Trp	p.R36W	ENST00000377045	NM_001654.4	36	Cgg/Tgg																																																																														
PREX2	0	MSKCC	GRCh37	8	68939506	68939506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	191	546	2	ENST00000288368.4:c.491G>A	p.Gly164Glu	p.G164E	ENST00000288368	NM_024870.2	164	gGa/gAa																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727432	66727432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	385	448	0	ENST00000307102.5:c.148C>T	p.Leu50Phe	p.L50F	ENST00000307102	NM_002755.3	50	Ctt/Ttt																																																																														
ELF3	0	MSKCC	GRCh37	1	201980352	201980352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1662	940	649	1	ENST00000359651.3:c.88C>T	p.Pro30Ser	p.P30S	ENST00000359651		30	Ccc/Tcc																																																																														
PGR	0	MSKCC	GRCh37	11	100912737	100912737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	328	557	0	ENST00000325455.5:c.2585G>T	p.Gly862Val	p.G862V	ENST00000325455	NM_001202474.3	862	gGa/gTa																																																																														
IRS2	0	MSKCC	GRCh37	13	110436155	110436155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	670	639	0	ENST00000375856.3:c.2246C>T	p.Ser749Phe	p.S749F	ENST00000375856	NM_003749.2	749	tCc/tTc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120042	70120092	+	inframe_deletion	In_Frame_Del	DEL	GCCCCCACAGGCCCCGCCGGCCCCGCAGGCGCCCCCGCAGCCGCAGGCGGC	GCCCCCACAGGCCCCGCCGGCCCCGCAGGCGCCCCCGCAGCCGCAGGCGGC	-			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	70	44	0	ENST00000245479.2:c.1054_1104del	p.Ala352_Gln368del	p.A352_Q368del	ENST00000245479	NM_000346.3	348	caGCCCCCACAGGCCCCGCCGGCCCCGCAGGCGCCCCCGCAGCCGCAGGCGGCg/cag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152224	11152224	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	232	588	0	ENST00000344626.4:c.4412A>G	p.Lys1471Arg	p.K1471R	ENST00000344626	NM_003072.3	1471	aAg/aGg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212576808	212576808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	173	510	0	ENST00000342788.4:c.1091G>A	p.Gly364Glu	p.G364E	ENST00000342788	NM_005235.2	364	gGg/gAg																																																																														
TP63	0	MSKCC	GRCh37	3	189612210	189612211	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	312	529	4	ENST00000264731.3:c.1962_1963delinsTT	p.Arg655Ter	p.R655*	ENST00000264731	NM_003722.4	654	ccCCga/ccTTga																																																																														
MSH3	0	MSKCC	GRCh37	5	79968606	79968606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	219	519	0	ENST00000265081.6:c.956G>A	p.Gly319Glu	p.G319E	ENST00000265081	NM_002439.4	319	gGa/gAa																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519347	137519347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	92	306	0	ENST00000367739.4:c.1291C>T	p.Pro431Ser	p.P431S	ENST00000367739	NM_000416.2	431	Ccc/Tcc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38173457	38173458	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	330	504	1	ENST00000317025.8:c.1958_1959delinsTT	p.Ser653Phe	p.S653F	ENST00000317025	NM_023034.1	653	tCC/tTT																																																																														
ATRX	0	MSKCC	GRCh37	X	76972677	76972678	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	305	278	1	ENST00000373344.5:c.63_64delinsTT	p.Leu22Phe	p.L22F	ENST00000373344	NM_000489.3	21	ttCCtt/ttTTtt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	439	653	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	325	496	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259335	89259335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750779844		P-0028995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	282	459	0	ENST00000336596.2:c.479G>A	p.Arg160His	p.R160H	ENST00000336596	NM_005233.5	160	cGt/cAt																																																																														
RET	0	MSKCC	GRCh37	10	43610129	43610129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141185224		P-0028995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	201	670	0	ENST00000355710.3:c.2081G>A	p.Arg694Gln	p.R694Q	ENST00000355710	NM_020975.4	694	cGg/cAg																																																																														
IDH1	0	MSKCC	GRCh37	2	209104686	209104686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	283	373	0	ENST00000345146.2:c.892C>T	p.Pro298Ser	p.P298S	ENST00000345146	NM_005896.2	298	Cca/Tca																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306782	41306782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	225	343	0	ENST00000373198.4:c.877G>T	p.Ala293Ser	p.A293S	ENST00000373198	NM_133170.3	293	Gct/Tct																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205283	38205283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1342	335	877	0	ENST00000317025.8:c.407C>T	p.Pro136Leu	p.P136L	ENST00000317025	NM_023034.1	136	cCt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1213	95	770	3	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	171	502	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0029014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	224	443	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600042	10600042	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148641376		P-0029014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	207	756	0	ENST00000171111.5:c.1534G>A	p.Val512Ile	p.V512I	ENST00000171111	NM_203500.1	512	Gtc/Atc																																																																														
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	221	791	0	ENST00000227507.2:c.857C>T	p.Thr286Ile	p.T286I	ENST00000227507	NM_053056.2	286	aCa/aTa																																																																														
SMO	0	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0029014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	10	105	1	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																														
RNF43	0	MSKCC	GRCh37	17	56492938	56492938	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0029014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	50	197	0	ENST00000407977.2:c.1A>T	p.Met1?	p.M1?	ENST00000407977		1	Atg/Ttg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111855990	111855990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201886863		P-0029014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	171	613	3	ENST00000341259.2:c.41C>T	p.Ala14Val	p.A14V	ENST00000341259	NM_005475.2	14	gCg/gTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89725059	89725059	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	30	243	0	ENST00000371953.3:c.1042A>C	p.Thr348Pro	p.T348P	ENST00000371953	NM_000314.4	348	Aca/Cca																																																																														
FGF4	0	MSKCC	GRCh37	11	69588109	69588109	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200870263		P-0029014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	188	601	0	ENST00000168712.1:c.589A>G	p.Met197Val	p.M197V	ENST00000168712	NM_002007.2	197	Atg/Gtg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107215	27107224	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGATGTAC	TGTGATGTAC	-			P-0029014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	270	477	1	ENST00000324856.7:c.6829_6838del	p.Asp2277PhefsTer2	p.D2277Ffs*2	ENST00000324856	NM_006015.4	2276	TGTGATGTACtg/tg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828704	72828704	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	197	577	0	ENST00000268489.5:c.7877del	p.Pro2626LeufsTer19	p.P2626Lfs*19	ENST00000268489	NM_006885.3	2626	cCt/ct																																																																														
SETD2	0	MSKCC	GRCh37	3	47098892	47098892	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	166	756	2	ENST00000409792.3:c.6382G>T	p.Glu2128Ter	p.E2128*	ENST00000409792	NM_014159.6	2128	Gag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426709	49426712	+	stop_gained	Nonsense_Mutation	DEL	GAAG	GAAG	A			P-0029014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	56	257	0	ENST00000301067.7:c.11776_11779delinsT	p.Leu3926_Gln3927delinsTer	p.L3926_Q3927delins*	ENST00000301067	NM_003482.3	3926	CTTCag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	44	539	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	99	487	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0029015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	39	472	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	316	702	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag																																																																														
HGF	0	MSKCC	GRCh37	7	81350074	81350074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	37	490	0	ENST00000222390.5:c.1258G>A	p.Glu420Lys	p.E420K	ENST00000222390	NM_000601.4	420	Gaa/Aaa																																																																														
HGF	0	MSKCC	GRCh37	7	81334750	81334750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	53	583	0	ENST00000222390.5:c.1966G>A	p.Glu656Lys	p.E656K	ENST00000222390	NM_000601.4	656	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	358	630	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15973560	15973560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	136	434	0	ENST00000268712.3:c.4432G>C	p.Asp1478His	p.D1478H	ENST00000268712	NM_006311.3	1478	Gac/Cac																																																																														
RBM10	0	MSKCC	GRCh37	X	47030622	47030637	+	intron_variant	Intron	DEL	CTGAGGATGCTGCCAC	CTGAGGATGCTGCCAC	-			P-0029016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	145	808	0	ENST00000329236.7:c.201+1725_201+1740del		p.*67*	ENST00000329236	NM_001204466.1	67																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	815	647	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	711	731	1	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
IRS2	0	MSKCC	GRCh37	13	110436716	110436716	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	850	766	2	ENST00000375856.3:c.1685A>T	p.Asp562Val	p.D562V	ENST00000375856	NM_003749.2	562	gAc/gTc																																																																														
APC	0	MSKCC	GRCh37	5	112176104	112176104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	403	604	0	ENST00000257430.4:c.4813G>A	p.Val1605Met	p.V1605M	ENST00000257430	NM_000038.5	1605	Gtg/Atg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741479	145741480	+	missense_variant	Missense_Mutation	DNP	AG	AG	GT			P-0029018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2267	476	962	1	ENST00000428558.2:c.1023_1024delinsAC	p.Phe342Leu	p.F342L	ENST00000428558	NM_004260.3	341	atCTtc/atACtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	64	520	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	130	571	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CBL	0	MSKCC	GRCh37	11	119148500	119148513	+	frameshift_variant	Frame_Shift_Del	DEL	TGATCTGACTGGCT	TGATCTGACTGGCT	-			P-0029019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	101	513	0	ENST00000264033.4:c.1042_1055del	p.Asp348MetfsTer2	p.D348Mfs*2	ENST00000264033	NM_005188.3	347	ccTGATCTGACTGGCTta/ccta																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434325	49434326	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAGAAAGGGTCGGAGGGCA			P-0029019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1641	90	789	0	ENST00000301067.7:c.7208_7227dup	p.Arg2410CysfsTer23	p.R2410Cfs*23	ENST00000301067	NM_003482.3	2409	-/TGCCCTCCGACCCTTTCTCC																																																																														
FLT1	0	MSKCC	GRCh37	13	28896473	28896473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	53	462	0	ENST00000282397.4:c.2977C>T	p.Pro993Ser	p.P993S	ENST00000282397	NM_002019.4	993	Ccc/Tcc																																																																														
MED12	0	MSKCC	GRCh37	X	70356147	70356147	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1240	421	627	0	ENST00000374080.3:c.5042C>G	p.Thr1681Ser	p.T1681S	ENST00000374080		1681	aCc/aGc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1203	132	666	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0029021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	80	642	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
ARID1A	0	MSKCC	GRCh37	1	27057935	27057935	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	137	669	0	ENST00000324856.7:c.1643del	p.Gln548ArgfsTer71	p.Q548Rfs*71	ENST00000324856	NM_006015.4	548	cAg/cg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981139	201981159	+	inframe_deletion	In_Frame_Del	DEL	TGGACTGGATCAGCTACCAAG	TGGACTGGATCAGCTACCAAG	-			P-0029021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1262	81	712	0	ENST00000359651.3:c.222_242del	p.Asp74_Val80del	p.D74_V80del	ENST00000359651		73	cTGGACTGGATCAGCTACCAAGtg/ctg																																																																														
MLH1	0	MSKCC	GRCh37	3	37081614	37081706	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGAAGTGGGGTTGGTAGGATTCTATTACTTACCTGTTTTTTGGTTTTATTTTTTGTTTTGCAGTTCTCCGGGAGATGTTGCATAACCACTCCT	TGAAGTGGGGTTGGTAGGATTCTATTACTTACCTGTTTTTTGGTTTTATTTTTTGTTTTGCAGTTCTCCGGGAGATGTTGCATAACCACTCCT	-			P-0029021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	16	116	0	ENST00000231790.2:c.1559-62_1589del		p.X520_splice	ENST00000231790	NM_000249.3	520																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	96	483	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ATM	0	MSKCC	GRCh37	11	108216596	108216596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	85	354	0	ENST00000278616.4:c.8545C>T	p.Arg2849Ter	p.R2849*	ENST00000278616	NM_000051.3	2849	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112154981	112154981	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	121	481	1	ENST00000257430.4:c.1252G>T	p.Glu418Ter	p.E418*	ENST00000257430	NM_000038.5	418	Gaa/Taa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589553	67589612	+	inframe_deletion	In_Frame_Del	DEL	AAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAA	AAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAA	-			P-0029022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	50	325	0	ENST00000274335.5:c.1318_1377del	p.Asp440_Lys459del	p.D440_K459del	ENST00000274335		439	gAAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAAaa/gaa																																																																														
APC	0	MSKCC	GRCh37	5	112175865	112175867	+	frameshift_variant	Frame_Shift_Del	DEL	TGC	TGC	A			P-0029022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	46	292	0	ENST00000257430.4:c.4574_4576delinsA	p.Met1525AsnfsTer7	p.M1525Nfs*7	ENST00000257430	NM_000038.5	1525	aTGCct/aAct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	260	498	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0029023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	780	800	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																																																														
DICER1	0	MSKCC	GRCh37	14	95596457	95596457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	225	570	0	ENST00000343455.3:c.511C>G	p.Leu171Val	p.L171V	ENST00000343455	NM_177438.2	171	Ctt/Gtt																																																																														
NBN	0	MSKCC	GRCh37	8	90965548	90965548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	189	479	0	ENST00000265433.3:c.1769G>A	p.Arg590Lys	p.R590K	ENST00000265433	NM_002485.4	590	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	160	547	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ATM	0	MSKCC	GRCh37	11	108098528	108098528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	59	341	0	ENST00000278616.4:c.98T>A	p.Leu33Gln	p.L33Q	ENST00000278616	NM_000051.3	33	cTg/cAg																																																																														
PREX2	0	MSKCC	GRCh37	8	69046509	69046509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0029024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	123	384	0	ENST00000288368.4:c.3982T>G	p.Leu1328Val	p.L1328V	ENST00000288368	NM_024870.2	1328	Ttg/Gtg																																																																														
PREX2	0	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	40	496	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																														
SUZ12	0	MSKCC	GRCh37	17	30325847	30325847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	39	403	0	ENST00000322652.5:c.2045G>A	p.Arg682His	p.R682H	ENST00000322652	NM_015355.2	682	cGt/cAt																																																																														
PMS1	0	MSKCC	GRCh37	2	190660493	190660495	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGG	AGG	-			P-0029025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	28	221	0	ENST00000441310.2:c.133_135del		p.X45_splice	ENST00000441310	NM_000534.4	45																																																																															
ASXL2	0	MSKCC	GRCh37	2	26068405	26068405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	295	607	0	ENST00000435504.4:c.85A>G	p.Met29Val	p.M29V	ENST00000435504		29	Atg/Gtg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	163	371	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	152	327	1				ENST00000310581	NM_198253.2																																																																																
HNF1A	0	MSKCC	GRCh37	12	121431441	121431441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	40	515	0	ENST00000257555.6:c.645C>A	p.Phe215Leu	p.F215L	ENST00000257555		215	ttC/ttA																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740842	58740842	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	193	452	0	ENST00000305921.3:c.1747A>T	p.Arg583Ter	p.R583*	ENST00000305921	NM_003620.3	583	Aga/Tga																																																																														
BRIP1	0	MSKCC	GRCh37	17	59821895	59821895	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	149	424	0	ENST00000259008.2:c.2155T>A	p.Leu719Met	p.L719M	ENST00000259008	NM_032043.2	719	Ttg/Atg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696466	47696466	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	231	361	0	ENST00000347630.2:c.357T>A	p.Ser119Arg	p.S119R	ENST00000347630	NM_001007230.1	119	agT/agA																																																																														
HGF	0	MSKCC	GRCh37	7	81334852	81334852	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0029059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	91	320	0	ENST00000222390.5:c.1865-1G>A		p.X622_splice	ENST00000222390	NM_000601.4	622																																																																															
RB1	0	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	92	330	0	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0029060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	228	578	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0029060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	103	316	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39637971	39637971	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	142	472	0	ENST00000262039.4:c.2388A>T	p.Gln796His	p.Q796H	ENST00000262039	NM_002647.2	796	caA/caT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	575	541	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	372	671	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737419	145737419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	120	619	0	ENST00000428558.2:c.3268G>A	p.Glu1090Lys	p.E1090K	ENST00000428558	NM_004260.3	1090	Gag/Aag																																																																														
TAP1	0	MSKCC	GRCh37	6	32813525	32813525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	237	389	0	ENST00000354258.4:c.2258C>T	p.Ser753Phe	p.S753F	ENST00000354258	NM_000593.5	753	tCc/tTc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472573	88472573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	189	390	0	ENST00000360948.2:c.1982G>A	p.Ser661Asn	p.S661N	ENST00000360948	NM_001012338.2	661	aGt/aAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573542	48573542	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	182	312	0	ENST00000342988.3:c.128del	p.Leu43TrpfsTer2	p.L43Wfs*2	ENST00000342988	NM_005359.5	42	agT/ag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138550	11138550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	164	593	0	ENST00000344626.4:c.3306C>G	p.Phe1102Leu	p.F1102L	ENST00000344626	NM_003072.3	1102	ttC/ttG																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0029065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	32	353	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
HGF	0	MSKCC	GRCh37	7	81331979	81331979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	20	272	1	ENST00000222390.5:c.2105G>A	p.Arg702His	p.R702H	ENST00000222390	NM_000601.4	702	cGt/cAt																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66524024	66524025	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAAA			P-0029065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	18	205	0	ENST00000358598.2:c.753_756dup	p.Val253Ter	p.V253*	ENST00000358598	NM_212471.2	251	agt/agTAAAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	45	366	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	54	478	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138825	64138825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	71	521	0	ENST00000334205.4:c.2192G>A	p.Arg731Gln	p.R731Q	ENST00000334205	NM_003942.2	731	cGg/cAg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120464865	120464865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	29	268	0	ENST00000256646.2:c.5207G>T	p.Gly1736Val	p.G1736V	ENST00000256646	NM_024408.3	1736	gGg/gTg																																																																														
TET1	0	MSKCC	GRCh37	10	70406420	70406420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	60	540	1	ENST00000373644.4:c.3934G>T	p.Val1312Leu	p.V1312L	ENST00000373644	NM_030625.2	1312	Gtg/Ttg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118377127	118377127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	34	263	0	ENST00000534358.1:c.10520C>T	p.Ala3507Val	p.A3507V	ENST00000534358	NM_005933.3	3507	gCt/gTt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470615	25470615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	48	525	0	ENST00000264709.3:c.859G>T	p.Gly287Cys	p.G287C	ENST00000264709	NM_175629.2	287	Ggc/Tgc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793450	242793450	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	82	415	0	ENST00000334409.5:c.628-1G>C		p.X210_splice	ENST00000334409	NM_005018.2	210																																																																															
FGFR3	0	MSKCC	GRCh37	4	1807328	1807328	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	60	563	0	ENST00000260795.2:c.1577del	p.Met526ArgfsTer3	p.M526Rfs*3	ENST00000260795		526	aTg/ag																																																																														
PREX2	0	MSKCC	GRCh37	8	69000009	69000009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	68	424	0	ENST00000288368.4:c.2078G>T	p.Gly693Val	p.G693V	ENST00000288368	NM_024870.2	693	gGa/gTa																																																																														
ATRX	0	MSKCC	GRCh37	X	76939205	76939205	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	51	499	0	ENST00000373344.5:c.1543A>T	p.Met515Leu	p.M515L	ENST00000373344	NM_000489.3	515	Atg/Ttg																																																																														
BAP1	0	MSKCC	GRCh37	3	52439293	52439293	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	94	452	0	ENST00000460680.1:c.949del	p.Ala317LeufsTer18	p.A317Lfs*18	ENST00000460680	NM_004656.3	317	Gct/ct																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	121	237	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	325	722	0	ENST00000269305.4:c.392A>G	p.Asn131Ser	p.N131S	ENST00000269305	NM_001126112.2	131	aAc/aGc																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073922	8073922	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	189	374	1	ENST00000377482.5:c.737T>A	p.Leu246Ter	p.L246*	ENST00000377482	NM_018948.3	246	tTa/tAa																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074336	8074337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	90	336	0	ENST00000377482.5:c.322dup	p.Glu108GlyfsTer9	p.E108Gfs*9	ENST00000377482	NM_018948.3	108	gag/gGag																																																																														
MTOR	0	MSKCC	GRCh37	1	11187719	11187719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	255	501	0	ENST00000361445.4:c.6178C>T	p.Arg2060Trp	p.R2060W	ENST00000361445	NM_004958.3	2060	Cgg/Tgg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59876513	59876513	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	187	326	1	ENST00000259008.2:c.1288A>T	p.Ile430Leu	p.I430L	ENST00000259008	NM_032043.2	430	Ata/Tta																																																																														
SOX9	0	MSKCC	GRCh37	17	70117926	70117926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	155	335	0	ENST00000245479.2:c.394A>G	p.Asn132Asp	p.N132D	ENST00000245479	NM_000346.3	132	Aac/Gac																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291611	15291611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	343	703	0	ENST00000263388.2:c.3023C>T	p.Pro1008Leu	p.P1008L	ENST00000263388	NM_000435.2	1008	cCt/cTt																																																																														
PREX2	0	MSKCC	GRCh37	8	69069629	69069629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	182	402	0	ENST00000288368.4:c.4304C>A	p.Ala1435Glu	p.A1435E	ENST00000288368	NM_024870.2	1435	gCa/gAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0029084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	134	504	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
SETD8	0	MSKCC	GRCh37	12	123879617	123879617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	49	396	0	ENST00000330479.4:c.313G>A	p.Val105Ile	p.V105I	ENST00000330479	NM_020382.3	105	Gta/Ata																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913263	32913263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	228	508	0	ENST00000380152.3:c.4771del	p.Cys1591ValfsTer26	p.C1591Vfs*26	ENST00000380152		1591	Tgt/gt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272078	15272078	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	73	592	0	ENST00000263388.2:c.6361T>G	p.Phe2121Val	p.F2121V	ENST00000263388	NM_000435.2	2121	Ttc/Gtc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157256623	157256633	+	frameshift_variant	Frame_Shift_Del	DEL	AACTAGATCTC	AACTAGATCTC	-			P-0029084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	46	301	0	ENST00000346085.5:c.1953_1963del	p.Arg652SerfsTer8	p.R652Sfs*8	ENST00000346085	NM_020732.3	650	ggAACTAGATCTCaa/ggaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	140	592	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	93	332	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	168	665	0	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																																																														
MSH6	0	MSKCC	GRCh37	2	48030613	48030613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	101	423	1	ENST00000234420.5:c.3227G>A	p.Arg1076His	p.R1076H	ENST00000234420	NM_000179.2	1076	cGc/cAc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	138	498	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925412	114925412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	83	661	0	ENST00000543371.1:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000543371	NM_001198531.1	497	cCg/cTg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508733	106508733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	85	501	1	ENST00000359195.3:c.727G>A	p.Ala243Thr	p.A243T	ENST00000359195	NM_002649.2	243	Gcc/Acc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604769	48604769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	57	360	0	ENST00000342988.3:c.1591C>T	p.Arg531Trp	p.R531W	ENST00000342988	NM_005359.5	531	Cgg/Tgg																																																																														
BCOR	0	MSKCC	GRCh37	X	39933575	39933575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	155	270	0	ENST00000378444.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000378444	NM_001123385.1	342	Cga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432458	49432458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	172	714	2	ENST00000301067.7:c.8681C>T	p.Pro2894Leu	p.P2894L	ENST00000301067	NM_003482.3	2894	cCg/cTg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983295	15983295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	55	417	0	ENST00000268712.3:c.3484C>T	p.Arg1162Trp	p.R1162W	ENST00000268712	NM_006311.3	1162	Cgg/Tgg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310895	123310895	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141796960		P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	119	398	0	ENST00000358487.5:c.533G>A	p.Arg178His	p.R178H	ENST00000358487	NM_000141.4	178	cGc/cAc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798112	45798112	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	174	686	0	ENST00000372115.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000372115	NM_001048171.1	233	Cga/Tga																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851510	63851510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	111	478	0	ENST00000279873.7:c.2288C>T	p.Ser763Leu	p.S763L	ENST00000279873	NM_032199.2	763	tCg/tTg																																																																														
SESN3	0	MSKCC	GRCh37	11	94911881	94911881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	113	487	1	ENST00000536441.1:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000536441	NM_144665.3	350	cGa/cAa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49448147	49448147	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	179	579	0	ENST00000301067.7:c.453del	p.Gln152ArgfsTer56	p.Q152Rfs*56	ENST00000301067	NM_003482.3	151	ggG/gg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99456376	99456376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	31	478	1	ENST00000268035.6:c.1693G>A	p.Gly565Ser	p.G565S	ENST00000268035	NM_000875.3	565	Ggc/Agc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81819704	81819704	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	152	591	1	ENST00000359376.3:c.114delC	p.Glu39SerfsTer7	p.E39Sfs*7	ENST00000359376	NM_002661.3	37	aCc/ac																																																																														
JAK3	0	MSKCC	GRCh37	19	17953261	17953261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	149	903	0	ENST00000458235.1:c.725T>G	p.Leu242Arg	p.L242R	ENST00000458235	NM_000215.3	242	cTg/cGg																																																																														
CIC	0	MSKCC	GRCh37	19	42791238	42791238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	92	781	0	ENST00000575354.2:c.298G>T	p.Ala100Ser	p.A100S	ENST00000575354	NM_015125.3	100	Gcc/Tcc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944584	40944584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	133	391	0	ENST00000373198.4:c.1918G>T	p.Ala640Ser	p.A640S	ENST00000373198	NM_133170.3	640	Gct/Tct																																																																														
TAP1	0	MSKCC	GRCh37	6	32815816	32815816	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	187	613	0	ENST00000354258.4:c.1800T>G	p.Asn600Lys	p.N600K	ENST00000354258	NM_000593.5	600	aaT/aaG																																																																														
FYN	0	MSKCC	GRCh37	6	112017591	112017591	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	125	486	0	ENST00000368678.4:c.922T>C	p.Phe308Leu	p.F308L	ENST00000368678		308	Ttc/Ctc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0029090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	40	465	0				ENST00000310581	NM_198253.2																																																																																
APC	0	MSKCC	GRCh37	5	112176526	112176526	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	32	382	0	ENST00000257430.4:c.5235G>C	p.Lys1745Asn	p.K1745N	ENST00000257430	NM_000038.5	1745	aaG/aaC																																																																														
CBL	0	MSKCC	GRCh37	11	119103299	119103299	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	62	578	0	ENST00000264033.4:c.337G>C	p.Glu113Gln	p.E113Q	ENST00000264033	NM_005188.3	113	Gag/Cag																																																																														
SLX4	0	MSKCC	GRCh37	16	3656520	3656520	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	69	865	0	ENST00000294008.3:c.715G>C	p.Glu239Gln	p.E239Q	ENST00000294008	NM_032444.2	239	Gaa/Caa																																																																														
XPO1	0	MSKCC	GRCh37	2	61724121	61724121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	47	338	0	ENST00000401558.2:c.781C>T	p.Arg261Ter	p.R261*	ENST00000401558	NM_003400.3	261	Cga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187541797	187541857	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGGTAAACTTTAGGTGACTTTCTTTGCTTTCTTTCACATTAATTTTGACAGAGGTAAGG	CTGGGTAAACTTTAGGTGACTTTCTTTGCTTTCTTTCACATTAATTTTGACAGAGGTAAGG	-			P-0029090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	41	483	0	ENST00000441802.2:c.5883_5943del	p.Leu1962MetfsTer6	p.L1962Mfs*6	ENST00000441802	NM_005245.3	1961	ggCCTTACCTCTGTCAAAATTAATGTGAAAGAAAGCAAAGAAAGTCACCTAAAGTTTACCCAG/gg																																																																														
EGFR	0	MSKCC	GRCh37	7	55221806	55221806	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1157	82	830	0	ENST00000275493.2:c.852del	p.Lys284AsnfsTer9	p.K284Nfs*9	ENST00000275493	NM_005228.3	284	Aaa/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	25	654	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RHOA	0	MSKCC	GRCh37	3	49412922	49412922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	701	719	0	ENST00000418115.1:c.101A>T	p.Tyr34Phe	p.Y34F	ENST00000418115	NM_001664.2	34	tAt/tTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0029091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	154	295	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
MED12	0	MSKCC	GRCh37	X	70351422	70351422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	599	699	1	ENST00000374080.3:c.4070G>A	p.Arg1357His	p.R1357H	ENST00000374080		1357	cGc/cAc																																																																														
ARAF	0	MSKCC	GRCh37	X	47426390	47426390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	582	555	1	ENST00000377045.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000377045	NM_001654.4	245	Ggt/Agt																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748660	43748661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	310	781	0	ENST00000382044.4:c.2145dup	p.Glu716ArgfsTer9	p.E716Rfs*9	ENST00000382044	NM_001141980.1	715	-/A																																																																														
SOX9	0	MSKCC	GRCh37	17	70118940	70118941	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	752	764	0	ENST00000245479.2:c.514dupT	p.Tyr172LeufsTer80	p.Y172Lfs*80	ENST00000245479	NM_000346.3	171	gat/gaTt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44894182	44894182	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	370	486	0	ENST00000377967.4:c.571C>T	p.Gln191Ter	p.Q191*	ENST00000377967	NM_021140.2	191	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	75	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578454	7578457	+	frameshift_variant	Frame_Shift_Del	DEL	GCGC	GCGC	-			P-0029093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	157	687	0	ENST00000269305.4:c.473_476del	p.Arg158ProfsTer11	p.R158Pfs*11	ENST00000269305	NM_001126112.2	158	cGCGCc/cc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372205	55372205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	55	388	1	ENST00000297316.4:c.895G>A	p.Ala299Thr	p.A299T	ENST00000297316	NM_022454.3	299	Gcg/Acg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44918675	44918692	+	inframe_deletion	In_Frame_Del	DEL	TACCTCTGCACTTGCAGC	TACCTCTGCACTTGCAGC	-			P-0029093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	54	502	0	ENST00000377967.4:c.1158_1175del	p.Asn386_Ala392delinsLys	p.N386_A392delinsK	ENST00000377967	NM_021140.2	386	aaTACCTCTGCACTTGCAGCa/aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	335	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214618	5214618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	187	532	0	ENST00000357368.4:c.4448G>A	p.Arg1483Gln	p.R1483Q	ENST00000357368	NM_002850.3	1483	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	23	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	21	273	0	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	27	510	3	ENST00000371953.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000371953	NM_000314.4	130	cGa/cTa																																																																														
RIT1	0	MSKCC	GRCh37	1	155874264	155874264	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	313	558	1	ENST00000368323.3:c.267T>A	p.Tyr89Ter	p.Y89*	ENST00000368323	NM_006912.5	89	taT/taA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578458	7578458	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	365	766	0	ENST00000269305.4:c.472del	p.Arg158AlafsTer12	p.R158Afs*12	ENST00000269305	NM_001126112.2	158	Cgc/gc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	208	490	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983938	15983938	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	145	344	0	ENST00000268712.3:c.3281A>C	p.Gln1094Pro	p.Q1094P	ENST00000268712	NM_006311.3	1094	cAg/cCg																																																																														
ATRX	0	MSKCC	GRCh37	X	76939901	76939901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	115	290	0	ENST00000373344.5:c.847G>A	p.Val283Ile	p.V283I	ENST00000373344	NM_000489.3	283	Gta/Ata																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	41	269	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
CRLF2	0	MSKCC	GRCh37	X	1314876	1314876	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0029108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	45	347	0				ENST00000381566																																																																																	
TCF7L2	0	MSKCC	GRCh37	10	114911573	114911573	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	136	557	0	ENST00000543371.1:c.1091T>G	p.Met364Arg	p.M364R	ENST00000543371	NM_001198531.1	364	aTg/aGg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	34	364	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	34	364	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0029109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	61	426	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	35	507	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	27	356	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	34	364	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42848533	42848533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	52	562	0	ENST00000398585.3:c.809C>T	p.Ser270Leu	p.S270L	ENST00000398585	NM_001135099.1	270	tCa/tTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	59	578	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MYCN	0	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	84	808	1	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	28	289	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023647	27023648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTC			P-0029113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	23	232	0	ENST00000324856.7:c.759_762dupCTCC	p.Ser255LeufsTer146	p.S255Lfs*146	ENST00000324856	NM_006015.4	251	-/CCTC																																																																														
PTEN	0	MSKCC	GRCh37	10	89720670	89720671	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0029113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	25	200	0	ENST00000371953.3:c.821_822delinsT	p.Trp274LeufsTer2	p.W274Lfs*2	ENST00000371953	NM_000314.4	274	tGG/tT																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	161	450	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	176	405	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	304	627	1	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																														
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	47	156	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	111	339	2	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	330	701	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	139	385	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																														
APC	0	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	124	403	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	400	519	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
PTCH1	0	MSKCC	GRCh37	9	98239082	98239082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	203	459	1	ENST00000331920.6:c.1561G>A	p.Ala521Thr	p.A521T	ENST00000331920	NM_000264.3	521	Gcc/Acc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	54	314	1	ENST00000375687.4:c.1933_1934dup	p.Gly646ValfsTer58	p.G646Vfs*58	ENST00000375687	NM_015338.5	642	-/GG																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	110	471	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	297	695	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	116	343	2	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	408	478	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
AR	0	MSKCC	GRCh37	X	66765164	66765164	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	34	142	0	ENST00000374690.3:c.176A>T	p.Gln59Leu	p.Q59L	ENST00000374690	NM_000044.3	59	cAg/cTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	287	697	0	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	372	934	7	ENST00000298229.2:c.2927dupC	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089688	27089688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	308	615	1	ENST00000324856.7:c.2644G>A	p.Gly882Arg	p.G882R	ENST00000324856	NM_006015.4	882	Ggg/Agg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101687	27101687	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	68	870	0	ENST00000324856.7:c.4969del	p.Arg1657GlyfsTer5	p.R1657Gfs*5	ENST00000324856	NM_006015.4	1657	Agg/gg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981777	201981778	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	322	711	0	ENST00000359651.3:c.492dup	p.Phe165LeufsTer31	p.F165Lfs*31	ENST00000359651		163	agc/agCc																																																																														
WT1	0	MSKCC	GRCh37	11	32421542	32421542	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	216	514	0	ENST00000332351.3:c.1050C>A	p.Cys350Ter	p.C350*	ENST00000332351	NM_024426.4	350	tgC/tgA																																																																														
WT1	0	MSKCC	GRCh37	11	32456500	32456502	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	17	123	0	ENST00000332351.3:c.390_392del	p.Pro136del	p.P136del	ENST00000332351	NM_024426.4	130	ccACCc/ccc																																																																														
LATS2	0	MSKCC	GRCh37	13	21562379	21562379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	250	586	0	ENST00000382592.4:c.1540C>T	p.Pro514Ser	p.P514S	ENST00000382592	NM_014572.2	514	Ccg/Tcg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3819299	3819299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	259	646	1	ENST00000262367.5:c.2936C>T	p.Ala979Val	p.A979V	ENST00000262367	NM_004380.2	979	gCc/gTc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67646012	67646013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	185	447	3	ENST00000264010.4:c.950_951dup	p.Gly318GlnfsTer16	p.G318Qfs*16	ENST00000264010	NM_006565.3	314	aac/aACac																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12044533	12044533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	186	475	0	ENST00000353533.5:c.1156G>T	p.Asp386Tyr	p.D386Y	ENST00000353533	NM_003010.3	386	Gat/Tat																																																																														
STAT5B	0	MSKCC	GRCh37	17	40364060	40364060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	138	236	0	ENST00000293328.3:c.1622G>A	p.Ser541Asn	p.S541N	ENST00000293328	NM_012448.3	541	aGc/aAc																																																																														
STAT3	0	MSKCC	GRCh37	17	40498603	40498603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	37	399	0	ENST00000264657.5:c.257T>C	p.Ile86Thr	p.I86T	ENST00000264657	NM_139276.2	86	aTc/aCc																																																																														
SOX9	0	MSKCC	GRCh37	17	70118934	70118934	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	302	815	0	ENST00000245479.2:c.506A>G	p.His169Arg	p.H169R	ENST00000245479	NM_000346.3	169	cAc/cGc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39609310	39609310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	119	285	0	ENST00000262039.4:c.1612A>G	p.Met538Val	p.M538V	ENST00000262039	NM_002647.2	538	Atg/Gtg																																																																														
ALK	0	MSKCC	GRCh37	2	29551222	29551222	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	233	572	0	ENST00000389048.3:c.1408A>G	p.Met470Val	p.M470V	ENST00000389048	NM_004304.4	470	Atg/Gtg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31389170	31389170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	230	576	0	ENST00000328111.2:c.2083A>G	p.Met695Val	p.M695V	ENST00000328111	NM_006892.3	695	Atg/Gtg																																																																														
MST1R	0	MSKCC	GRCh37	3	49934211	49934211	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	316	766	0	ENST00000296474.3:c.2296T>C	p.Tyr766His	p.Y766H	ENST00000296474	NM_002447.2	766	Tac/Cac																																																																														
ATR	0	MSKCC	GRCh37	3	142231299	142231299	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	176	391	0	ENST00000350721.4:c.4655T>A	p.Ile1552Asn	p.I1552N	ENST00000350721	NM_001184.3	1552	aTt/aAt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245352	153245352	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	176	541	1	ENST00000281708.4:c.1839T>A	p.Cys613Ter	p.C613*	ENST00000281708	NM_033632.3	613	tgT/tgA																																																																														
SESN1	0	MSKCC	GRCh37	6	109322563	109322563	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	242	664	1	ENST00000436639.2:c.474A>T	p.Leu158Phe	p.L158F	ENST00000436639	NM_014454.2	158	ttA/ttT																																																																														
ROS1	0	MSKCC	GRCh37	6	117710800	117710800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	144	420	0	ENST00000368508.3:c.1472T>C	p.Leu491Pro	p.L491P	ENST00000368508	NM_002944.2	491	cTa/cCa																																																																														
PMS2	0	MSKCC	GRCh37	7	6026709	6026709	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	279	817	0	ENST00000265849.7:c.1687C>T	p.Arg563Ter	p.R563*	ENST00000265849	NM_000535.5	563	Cga/Tga																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845958	151845959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	193	581	0	ENST00000262189.6:c.13053dupA	p.Trp4352MetfsTer17	p.W4352Mfs*17	ENST00000262189	NM_170606.2	4351	-/A																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964514	70964514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	220	618	0	ENST00000276594.2:c.1514G>A	p.Arg505His	p.R505H	ENST00000276594	NM_024504.3	505	cGc/cAc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412261	63412262	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	289	423	0	ENST00000330258.3:c.905dup	p.Asn302LysfsTer22	p.N302Kfs*22	ENST00000330258	NM_152424.3	302	aat/aaAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	306	600	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716326	52716326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	217	502	1	ENST00000322088.6:c.770G>T	p.Trp257Leu	p.W257L	ENST00000322088	NM_014225.5	257	tGg/tTg																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380350	14380350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	139	253	0	ENST00000256196.4:c.67G>T	p.Gly23Cys	p.G23C	ENST00000256196		23	Ggc/Tgc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89176374	89176374	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	22	290	0	ENST00000336596.2:c.104C>G	p.Ser35Ter	p.S35*	ENST00000336596	NM_005233.5	35	tCa/tGa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589587	67589598	+	inframe_deletion	In_Frame_Del	DEL	TGAATATAACAC	TGAATATAACAC	-			P-0029117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	78	248	0	ENST00000274335.5:c.1351_1362del	p.Glu451_Thr454del	p.E451_T454del	ENST00000274335		450	caTGAATATAACACt/cat																																																																														
SYK	0	MSKCC	GRCh37	9	93641147	93641147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	115	621	0	ENST00000375746.1:c.1493G>C	p.Arg498Thr	p.R498T	ENST00000375746	NM_001174167.1	498	aGa/aCa																																																																														
AR	0	MSKCC	GRCh37	X	66765715	66765715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	410	846	0	ENST00000374690.3:c.727G>C	p.Val243Leu	p.V243L	ENST00000374690	NM_000044.3	243	Gtg/Ctg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	154	305	0				ENST00000310581	NM_198253.2																																																																																
BRAF	0	MSKCC	GRCh37	7	140453134	140453136	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0029118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	136	486	0	ENST00000288602.6:c.1799_1801del	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	600	gTGAaa/gaa																																																																														
RHEB	0	MSKCC	GRCh37	7	151216587	151216587	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	29	136	0	ENST00000262187.5:c.11C>G	p.Ser4Cys	p.S4C	ENST00000262187	NM_005614.3	4	tCc/tGc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	180	458	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	81	455	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	74	301	0	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																																																														
PTEN	0	MSKCC	GRCh37	10	89685308	89685308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	74	309	1	ENST00000371953.3:c.203A>G	p.Tyr68Cys	p.Y68C	ENST00000371953	NM_000314.4	68	tAc/tGc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732981	30732981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	158	363	0	ENST00000359013.4:c.1669C>T	p.Gln557Ter	p.Q557*	ENST00000359013	NM_001024847.2	557	Cag/Tag																																																																														
RHOA	0	MSKCC	GRCh37	3	49405962	49405962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	118	598	0	ENST00000418115.1:c.176A>G	p.Asp59Gly	p.D59G	ENST00000418115	NM_001664.2	59	gAc/gGc																																																																														
CCND1	0	MSKCC	GRCh37	11	69466000	69466000	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	157	826	2	ENST00000227507.2:c.838G>T	p.Glu280Ter	p.E280*	ENST00000227507	NM_053056.2	280	Gag/Tag																																																																														
MITF	0	MSKCC	GRCh37	3	69928358	69928358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	66	444	0	ENST00000352241.4:c.178C>T	p.Arg60Cys	p.R60C	ENST00000352241	NM_198159.2	60	Cgc/Tgc																																																																														
TET1	0	MSKCC	GRCh37	10	70404633	70404633	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	109	687	0	ENST00000373644.4:c.2147C>A	p.Ser716Ter	p.S716*	ENST00000373644	NM_030625.2	716	tCa/tAa																																																																														
BLM	0	MSKCC	GRCh37	15	91326125	91326125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	80	478	0	ENST00000355112.3:c.2629G>T	p.Asp877Tyr	p.D877Y	ENST00000355112	NM_000057.2	877	Gat/Tat																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348962	89348962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	139	737	1	ENST00000301030.4:c.3988G>A	p.Gly1330Arg	p.G1330R	ENST00000301030	NM_001256183.1	1330	Gga/Aga																																																																														
APC	0	MSKCC	GRCh37	5	112103078	112103081	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0029119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	46	322	0	ENST00000257430.4:c.416_419del	p.Lys139ArgfsTer30	p.K139Rfs*30	ENST00000257430	NM_000038.5	138	gAGAAa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0029123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	194	702	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
MEN1	0	MSKCC	GRCh37	11	64575529	64575530	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0029123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	84	589	1	ENST00000337652.1:c.502_503delinsTT	p.Gly168Leu	p.G168L	ENST00000337652	NM_130803.2	168	GGg/TTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118353175	118353175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	52	410	0	ENST00000534358.1:c.4051C>A	p.Pro1351Thr	p.P1351T	ENST00000534358	NM_005933.3	1351	Cca/Aca																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533659	63533659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	82	591	0	ENST00000307078.5:c.1495del	p.Leu499SerfsTer8	p.L499Sfs*8	ENST00000307078	NM_004655.3	499	Ctc/tc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10254620	10254620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	222	459	0	ENST00000340748.4:c.2890G>A	p.Val964Met	p.V964M	ENST00000340748		964	Gtg/Atg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132515	11132515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	340	741	0	ENST00000344626.4:c.2731G>A	p.Gly911Ser	p.G911S	ENST00000344626	NM_003072.3	911	Ggc/Agc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248434	212248434	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	146	293	0	ENST00000342788.4:c.3833T>A	p.Val1278Glu	p.V1278E	ENST00000342788	NM_005235.2	1278	gTg/gAg																																																																														
EP300	0	MSKCC	GRCh37	22	41572281	41572281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	182	660	0	ENST00000263253.7:c.4810C>T	p.Pro1604Ser	p.P1604S	ENST00000263253	NM_001429.3	1604	Cct/Tct																																																																														
NF1	0	MSKCC	GRCh37	17	29528472	29528472	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	29	374	0	ENST00000358273.4:c.1229del	p.Leu410ArgfsTer2	p.L410Rfs*2	ENST00000358273	NM_001042492.2	410	cTg/cg																																																																														
RNF43	0	MSKCC	GRCh37	17	56440889	56440889	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0029127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	188	654	0	ENST00000407977.2:c.448C>T	p.Gln150Ter	p.Q150*	ENST00000407977		150	Cag/Tag																																																																														
MSH6	0	MSKCC	GRCh37	2	48018252	48018252	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	83	444	0	ENST00000234420.5:c.447del	p.Lys149AsnfsTer25	p.K149Nfs*25	ENST00000234420	NM_000179.2	149	aaG/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	427	614	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56490331	56490331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	57	359	0	ENST00000267101.3:c.2100G>C	p.Leu700Phe	p.L700F	ENST00000267101	NM_001982.3	700	ttG/ttC																																																																														
ATRX	0	MSKCC	GRCh37	X	76909624	76909625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGTC			P-0029128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	94	150	0	ENST00000373344.5:c.4277_4280dup	p.Ile1428ThrfsTer3	p.I1428Tfs*3	ENST00000373344	NM_000489.3	1427	cgt/cgGACGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	540	608	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CIC	0	MSKCC	GRCh37	19	42791751	42791751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	111	578	0	ENST00000575354.2:c.637C>T	p.Arg213Trp	p.R213W	ENST00000575354	NM_015125.3	213	Cgg/Tgg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81969969	81969969	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	149	402	0	ENST00000359376.3:c.3038A>G	p.Asn1013Ser	p.N1013S	ENST00000359376	NM_002661.3	1013	aAt/aGt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52712580	52712580	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	100	385	0	ENST00000394830.3:c.172C>T	p.Arg58Ter	p.R58*	ENST00000394830	NM_018313.4	58	Cga/Tga																																																																														
STAT3	0	MSKCC	GRCh37	17	40475082	40475082	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	200	490	0	ENST00000264657.5:c.1828T>C	p.Phe610Leu	p.F610L	ENST00000264657	NM_139276.2	610	Ttc/Ctc																																																																														
VHL	0	MSKCC	GRCh37	3	10183719	10183729	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGCTCGGTG	TGCGCTCGGTG	-			P-0029131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	181	603	0	ENST00000256474.2:c.188_198del	p.Leu63GlnfsTer65	p.L63Qfs*65	ENST00000256474	NM_000551.3	63	cTGCGCTCGGTG/c																																																																														
KIT	0	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	422	308	1	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	65	493	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0029136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	50	274	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	199	394	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																														
CTCF	0	MSKCC	GRCh37	16	67654633	67654633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	109	399	0	ENST00000264010.4:c.1120A>G	p.Thr374Ala	p.T374A	ENST00000264010	NM_006565.3	374	Act/Gct																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087443	27087443	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	123	526	0	ENST00000324856.7:c.2017C>T	p.Gln673Ter	p.Q673*	ENST00000324856	NM_006015.4	673	Cag/Tag																																																																														
SOX9	0	MSKCC	GRCh37	17	70119936	70119937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	102	367	0	ENST00000245479.2:c.939dup	p.Thr314HisfsTer264	p.T314Hfs*264	ENST00000245479	NM_000346.3	313	gtc/gtCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	84	392	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	139	402	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																														
STK11	0	MSKCC	GRCh37	19	1207059	1207059	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	219	656	0	ENST00000326873.7:c.148del	p.Leu50Ter	p.L50*	ENST00000326873	NM_000455.4	49	taC/ta																																																																														
ERF	0	MSKCC	GRCh37	19	42753374	42753374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	83	746	0	ENST00000222329.4:c.890C>T	p.Ser297Leu	p.S297L	ENST00000222329	NM_006494.2	297	tCa/tTa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	114	313	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508563	106508563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	31	304	0	ENST00000359195.3:c.557C>T	p.Ala186Val	p.A186V	ENST00000359195	NM_002649.2	186	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577531	7577531	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	94	628	0	ENST00000269305.4:c.750delC	p.Ile251SerfsTer94	p.I251Sfs*94	ENST00000269305	NM_001126112.2	250	ccC/cc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156838003	156838003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	52	827	0	ENST00000524377.1:c.536G>A	p.Gly179Glu	p.G179E	ENST00000524377	NM_002529.3	179	gGg/gAg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302866	15302866	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	55	774	1	ENST00000263388.2:c.584A>T	p.Glu195Val	p.E195V	ENST00000263388	NM_000435.2	195	gAg/gTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0029142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	222	462	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
RB1	0	MSKCC	GRCh37	13	49039247	49039247	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	41	450	0	ENST00000267163.4:c.2325G>T	p.Arg775Ser	p.R775S	ENST00000267163	NM_000321.2	775	agG/agT																																																																														
TP53	0	MSKCC	GRCh37	17	7578554	7578571	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGTAGGAAGAGGAAGG	ACTGTAGGAAGAGGAAGG	GCAGA			P-0029142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	150	727	1	ENST00000269305.4:c.376-17_376delinsTCTGC		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	201	537	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	79	195	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	485	614	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41400138	41400138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	361	484	0	ENST00000373198.4:c.621G>C	p.Gln207His	p.Q207H	ENST00000373198	NM_133170.3	207	caG/caC																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432430	49432430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	46	600	0	ENST00000301067.7:c.8709A>T	p.Arg2903Ser	p.R2903S	ENST00000301067	NM_003482.3	2903	agA/agT																																																																														
APC	0	MSKCC	GRCh37	5	112174491	112174491	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	108	334	0	ENST00000257430.4:c.3201del	p.Gln1067HisfsTer59	p.Q1067Hfs*59	ENST00000257430	NM_000038.5	1067	cAa/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	49	409	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	116	559	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
NF1	0	MSKCC	GRCh37	17	29683984	29683985	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	33	393	0	ENST00000358273.4:c.7747_7748del	p.Arg2583AspfsTer12	p.R2583Dfs*12	ENST00000358273	NM_001042492.2	2582	cAG/c																																																																														
RB1	0	MSKCC	GRCh37	13	48955472	48955473	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	50	390	0	ENST00000267163.4:c.1589_1590del	p.Lys530SerfsTer24	p.K530Sfs*24	ENST00000267163	NM_000321.2	530	AAa/a																																																																														
SPRED1	0	MSKCC	GRCh37	15	38614536	38614536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	57	509	0	ENST00000299084.4:c.303del	p.Thr102ArgfsTer19	p.T102Rfs*19	ENST00000299084	NM_152594.2	101	cTt/ct																																																																														
MGA	0	MSKCC	GRCh37	15	42003406	42003406	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	80	484	0	ENST00000219905.7:c.2945del	p.Gly982GlufsTer12	p.G982Efs*12	ENST00000219905	NM_001164273.1	981	caG/ca																																																																														
NTRK3	0	MSKCC	GRCh37	15	88726703	88726703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	39	400	0	ENST00000360948.2:c.341G>T	p.Gly114Val	p.G114V	ENST00000360948	NM_001012338.2	114	gGa/gTa																																																																														
NF1	0	MSKCC	GRCh37	17	29556192	29556193	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	CT			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	19	153	0	ENST00000358273.4:c.2559_2560delinsCT	p.Gln853_Gln854delinsHisTer	p.Q853_Q854delinsH*	ENST00000358273	NM_001042492.2	853	caGCag/caCTag																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11170487	11170489	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs1375203306		P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	86	621	0	ENST00000344626.4:c.4696_4698del	p.Lys1566del	p.K1566del	ENST00000344626	NM_003072.3	1565	gAGAag/gag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281554	15281554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	96	669	0	ENST00000263388.2:c.4819G>T	p.Ala1607Ser	p.A1607S	ENST00000263388	NM_000435.2	1607	Gcc/Tcc																																																																														
CUL3	0	MSKCC	GRCh37	2	225400285	225400285	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	30	242	0	ENST00000264414.4:c.338A>T	p.Gln113Leu	p.Q113L	ENST00000264414	NM_003590.4	113	cAa/cTa																																																																														
TP63	0	MSKCC	GRCh37	3	189586389	189586389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	37	338	1	ENST00000264731.3:c.1013G>T	p.Arg338Leu	p.R338L	ENST00000264731	NM_003722.4	338	cGc/cTc																																																																														
TERT	0	MSKCC	GRCh37	5	1254594	1254594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	177	559	1	ENST00000310581.5:c.3184G>T	p.Ala1062Ser	p.A1062S	ENST00000310581	NM_198253.2	1062	Gcc/Tcc																																																																														
MSH3	0	MSKCC	GRCh37	5	80088596	80088596	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	49	422	0	ENST00000265081.6:c.2589del	p.Arg863SerfsTer4	p.R863Sfs*4	ENST00000265081	NM_002439.4	863	aGg/ag																																																																														
CSF1R	0	MSKCC	GRCh37	5	149441123	149441123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	171	666	0	ENST00000286301.3:c.1789G>T	p.Val597Leu	p.V597L	ENST00000286301	NM_005211.3	597	Gtg/Ttg																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149514562	149514563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	43	308	0	ENST00000261799.4:c.381_382insT	p.Leu128SerfsTer3	p.L128Sfs*3	ENST00000261799	NM_002609.3	127	-/T																																																																														
PMS2	0	MSKCC	GRCh37	7	6038846	6038846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	58	501	0	ENST00000265849.7:c.598G>T	p.Val200Leu	p.V200L	ENST00000265849	NM_000535.5	200	Gta/Tta																																																																														
SMO	0	MSKCC	GRCh37	7	128845188	128845188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	71	588	0	ENST00000249373.3:c.682C>A	p.Gln228Lys	p.Q228K	ENST00000249373	NM_005631.4	228	Cag/Aag																																																																														
KDM5C	0	MSKCC	GRCh37	X	53239666	53239666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	92	304	0	ENST00000375401.3:c.1676G>T	p.Ser559Ile	p.S559I	ENST00000375401	NM_004187.3	559	aGc/aTc																																																																														
KIT	0	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	31	327	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa																																																																														
BLM	0	MSKCC	GRCh37	15	91292892	91292892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	10	560	0	ENST00000355112.3:c.394C>T	p.Arg132Trp	p.R132W	ENST00000355112	NM_000057.2	132	Cgg/Tgg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3808887	3808887	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	11	494	0	ENST00000262367.5:c.3337C>T	p.Gln1113Ter	p.Q1113*	ENST00000262367	NM_004380.2	1113	Cag/Tag																																																																														
RUNX1	0	MSKCC	GRCh37	21	36421183	36421183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	11	375	0	ENST00000300305.3:c.14G>A	p.Ser5Asn	p.S5N	ENST00000300305		5	aGc/aAc																																																																														
KIT	0	MSKCC	GRCh37	4	55593590	55593601	+	inframe_deletion	In_Frame_Del	DEL	GTATGAAGTACA	GTATGAAGTACA	-			P-0029150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	22	358	0	ENST00000288135.5:c.1658_1669del	p.Tyr553_Gln556del	p.Y553_Q556del	ENST00000288135	NM_000222.2	552	atGTATGAAGTACAg/atg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	128	414	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
STK11	0	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	224	730	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																														
MAX	0	MSKCC	GRCh37	14	65560425	65560425	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0029152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	67	264	0	ENST00000358664.4:c.171+1G>T		p.X57_splice	ENST00000358664	NM_002382.4	57																																																																															
FGFR2	0	MSKCC	GRCh37	10	123244975	123244975	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	185	597	1	ENST00000358487.5:c.2129A>T	p.Glu710Val	p.E710V	ENST00000358487	NM_000141.4	710	gAg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578315	7578493	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCC	AGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCC	-			P-0029152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	224	495	0	ENST00000269305.4:c.437_560-26del		p.X146_splice	ENST00000269305	NM_001126112.2	146																																																																															
TET2	0	MSKCC	GRCh37	4	106193884	106193885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	104	358	0	ENST00000380013.4:c.4350dup	p.Arg1451SerfsTer27	p.R1451Sfs*27	ENST00000380013	NM_001127208.2	1449	tct/tcTt																																																																														
JUN	0	MSKCC	GRCh37	1	59247804	59247805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0029153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	183	714	0	ENST00000371222.2:c.937_938dup	p.Met313IlefsTer2	p.M313Ifs*2	ENST00000371222	NM_002228.3	313	atg/atATg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18644395	18644395	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	78	242	0	ENST00000266497.5:c.2573A>C	p.Lys858Thr	p.K858T	ENST00000266497		858	aAg/aCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0029153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	199	429	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
STK11	0	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	282	634	1	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46266401	46266401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	105	318	0	ENST00000371998.3:c.2386G>T	p.Asp796Tyr	p.D796Y	ENST00000371998		796	Gac/Tac																																																																														
PREX2	0	MSKCC	GRCh37	8	68942753	68942753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	195	476	3	ENST00000288368.4:c.565C>T	p.Arg189Trp	p.R189W	ENST00000288368	NM_024870.2	189	Cgg/Tgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9547022	9547022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	128	206	0	ENST00000353224.5:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000353224	NM_177990.2	334	Gat/Aat																																																																														
PPP6C	0	MSKCC	GRCh37	9	127933411	127933411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	343	546	1	ENST00000373547.4:c.124C>T	p.Gln42Ter	p.Q42*	ENST00000373547	NM_002721.4	42	Cag/Tag																																																																														
AXL	0	MSKCC	GRCh37	19	41744450	41744450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1483	607	652	0	ENST00000301178.4:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000301178	NM_021913.4	357	cGg/cAg																																																																														
MET	0	MSKCC	GRCh37	7	116403254	116403254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	521	530	0	ENST00000397752.3:c.2515C>T	p.Pro839Ser	p.P839S	ENST00000397752	NM_000245.2	839	Cct/Tct																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	171	431	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	171	431	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	119	415	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0029156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	50	250	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	171	431	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7579567	7579580	+	frameshift_variant	Frame_Shift_Del	DEL	CATTGCTTGGGACG	CATTGCTTGGGACG	-			P-0029156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	151	669	0	ENST00000269305.4:c.107_120del	p.Pro36ArgfsTer2	p.P36Rfs*2	ENST00000269305	NM_001126112.2	36	cCGTCCCAAGCAATG/c																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974770	21974795	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCGTGGCCAGCCAGTCAGCCGAAG	GGCCGTGGCCAGCCAGTCAGCCGAAG	-			P-0029156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	59	202	0	ENST00000304494.5:c.32_57del	p.Pro11ArgfsTer24	p.P11Rfs*24	ENST00000304494	NM_000077.4	11	cCTTCGGCTGACTGGCTGGCCACGGCC/c																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	117	296	0				ENST00000310581	NM_198253.2																																																																																
LATS2	0	MSKCC	GRCh37	13	21562814	21562814	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	215	487	0	ENST00000382592.4:c.1105del	p.Gln369SerfsTer64	p.Q369Sfs*64	ENST00000382592	NM_014572.2	369	Cag/ag																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	25	400	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
TP53	0	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0029158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	36	596	0	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PIK3CD	0	MSKCC	GRCh37	1	9775611	9775611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	70	416	1	ENST00000377346.4:c.154C>T	p.Arg52Cys	p.R52C	ENST00000377346	NM_005026.3	52	Cgc/Tgc																																																																														
SPEN	0	MSKCC	GRCh37	1	16255142	16255143	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	159	483	10	ENST00000375759.3:c.2417_2418delGA	p.Arg806ThrfsTer14	p.R806Tfs*14	ENST00000375759	NM_015001.2	803	GAg/g																																																																														
SPEN	0	MSKCC	GRCh37	1	16258604	16258604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	102	528	3	ENST00000375759.3:c.5869C>T	p.Arg1957Cys	p.R1957C	ENST00000375759	NM_015001.2	1957	Cgc/Tgc																																																																														
SPEN	0	MSKCC	GRCh37	1	16259043	16259043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	96	545	0	ENST00000375759.3:c.6313delG	p.Ala2105LeufsTer33	p.A2105Lfs*33	ENST00000375759	NM_015001.2	2103	aGg/ag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105715	27105717	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	44	334	0	ENST00000324856.7:c.5334_5336del	p.Glu1780del	p.E1780del	ENST00000324856	NM_006015.4	1776	GAA/-																																																																														
MPL	0	MSKCC	GRCh37	1	43812466	43812466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	59	414	0	ENST00000372470.3:c.1169G>A	p.Arg390His	p.R390H	ENST00000372470	NM_005373.2	390	cGc/cAc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46738203	46738203	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	146	409	0	ENST00000371975.4:c.1235T>C	p.Val412Ala	p.V412A	ENST00000371975	NM_003579.3	412	gTt/gCt																																																																														
JAK1	0	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	54	349	7	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	70	467	3	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
HRAS	0	MSKCC	GRCh37	11	533595	533595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	120	589	0	ENST00000311189.7:c.308T>C	p.Val103Ala	p.V103A	ENST00000311189		103	gTg/gCg																																																																														
MEN1	0	MSKCC	GRCh37	11	64575419	64575419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	90	631	0	ENST00000337652.1:c.613G>A	p.Gly205Ser	p.G205S	ENST00000337652	NM_130803.2	205	Ggc/Agc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	37	634	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443718	49443718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	102	606	0	ENST00000301067.7:c.3653C>T	p.Ala1218Val	p.A1218V	ENST00000301067	NM_003482.3	1218	gCc/gTc																																																																														
POLE	0	MSKCC	GRCh37	12	133236020	133236020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	95	497	0	ENST00000320574.5:c.3136T>C	p.Tyr1046His	p.Y1046H	ENST00000320574	NM_006231.2	1046	Tac/Cac																																																																														
BRCA2	0	MSKCC	GRCh37	13	32953958	32953958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	132	469	0	ENST00000380152.3:c.9025T>C	p.Tyr3009His	p.Y3009H	ENST00000380152		3009	Tat/Cat																																																																														
PRKD1	0	MSKCC	GRCh37	14	30396579	30396580	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	62	278	0	ENST00000331968.5:c.139_140insT	p.Gly47ValfsTer14	p.G47Vfs*14	ENST00000331968	NM_002742.2	47	ggg/gTgg																																																																														
AKT1	0	MSKCC	GRCh37	14	105238733	105238733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	93	643	1	ENST00000349310.3:c.1229G>A	p.Gly410Asp	p.G410D	ENST00000349310	NM_001014432.1	410	gGt/gAt																																																																														
AXIN1	0	MSKCC	GRCh37	16	343543	343543	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150504240		P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	146	664	1	ENST00000262320.3:c.2131C>T	p.Arg711Cys	p.R711C	ENST00000262320	NM_003502.3	711	Cgc/Tgc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346178	89346178	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	23	240	0	ENST00000301030.4:c.6772del	p.Ala2258LeufsTer79	p.A2258Lfs*79	ENST00000301030	NM_001256183.1	2258	Gct/ct																																																																														
NCOR1	0	MSKCC	GRCh37	17	15950317	15950319	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	121	653	1	ENST00000268712.3:c.6625_6627del	p.Lys2209del	p.K2209del	ENST00000268712	NM_006311.3	2209	AAG/-																																																																														
EZH1	2145	MSKCC	GRCh37	17	40858053	40858053	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	150	585	0	ENST00000428826.2:c.1811del	p.Asn604ThrfsTer26	p.N604Tfs*26	ENST00000428826		604	aAc/ac																																																																														
DNMT1	0	MSKCC	GRCh37	19	10248608	10248608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	67	547	1	ENST00000340748.4:c.4145C>T	p.Ser1382Leu	p.S1382L	ENST00000340748		1382	tCg/tTg																																																																														
CALR	0	MSKCC	GRCh37	19	13051081	13051081	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	142	430	0	ENST00000316448.5:c.517A>G	p.Thr173Ala	p.T173A	ENST00000316448	NM_004343.3	173	Aca/Gca																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279340	18279340	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	90	565	0	ENST00000222254.8:c.1796del	p.Asn599MetfsTer38	p.N599Mfs*38	ENST00000222254	NM_005027.3	598	Aaa/aa																																																																														
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	67	588	4	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	143	695	3	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
ALK	0	MSKCC	GRCh37	2	30143462	30143462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	40	280	0	ENST00000389048.3:c.64G>A	p.Gly22Arg	p.G22R	ENST00000389048	NM_004304.4	22	Ggg/Agg																																																																														
MSH2	0	MSKCC	GRCh37	2	47690193	47690193	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	140	400	0	ENST00000233146.2:c.1413del	p.Lys471AsnfsTer11	p.K471Nfs*11	ENST00000233146	NM_000251.2	470	gtA/gt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	132	462	1	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																																																														
MST1R	0	MSKCC	GRCh37	3	49936594	49936594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	79	672	0	ENST00000296474.3:c.1333C>T	p.Pro445Ser	p.P445S	ENST00000296474	NM_002447.2	445	Cca/Tca																																																																														
BAP1	0	MSKCC	GRCh37	3	52437444	52437444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	66	467	0	ENST00000460680.1:c.1717C>A	p.Leu573Met	p.L573M	ENST00000460680	NM_004656.3	573	Ctg/Atg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916935	178916935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	151	523	1	ENST00000263967.3:c.322C>T	p.Arg108Cys	p.R108C	ENST00000263967	NM_006218.2	108	Cgt/Tgt																																																																														
BCL6	0	MSKCC	GRCh37	3	187443307	187443307	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	55	274	1	ENST00000232014.4:c.1819T>C	p.Cys607Arg	p.C607R	ENST00000232014	NM_001130845.1	607	Tgc/Cgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187629475	187629475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	81	579	0	ENST00000441802.2:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000441802	NM_005245.3	503	Gca/Aca																																																																														
APC	0	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	54	314	1	ENST00000257430.4:c.4479_4480del	p.Glu1494LysfsTer19	p.E1494Kfs*19	ENST00000257430	NM_000038.5	1493	acGGaa/acaa																																																																														
NSD1	0	MSKCC	GRCh37	5	176638435	176638435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112500609		P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	107	621	1	ENST00000439151.2:c.3035G>A	p.Arg1012His	p.R1012H	ENST00000439151	NM_022455.4	1012	cGt/cAt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157488275	157488275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	61	348	0	ENST00000346085.5:c.2981C>T	p.Ala994Val	p.A994V	ENST00000346085	NM_020732.3	994	gCg/gTg																																																																														
MET	0	MSKCC	GRCh37	7	116371798	116371798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	122	371	1	ENST00000397752.3:c.1277G>A	p.Arg426His	p.R426H	ENST00000397752	NM_000245.2	426	cGc/cAc																																																																														
BRAF	0	MSKCC	GRCh37	7	140624475	140624480	+	inframe_deletion	In_Frame_Del	DEL	CCACCA	CCACCA	-			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	50	80	0	ENST00000288602.6:c.24_29del	p.Gly10_Gly11del	p.G10_G11del	ENST00000288602	NM_004333.4	8	ggTGGTGGc/ggc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741719	145741719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	186	567	2	ENST00000428558.2:c.784C>T	p.Arg262Trp	p.R262W	ENST00000428558	NM_004260.3	262	Cgg/Tgg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741892	145741892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	57	623	0	ENST00000428558.2:c.611C>G	p.Ala204Gly	p.A204G	ENST00000428558	NM_004260.3	204	gCc/gGc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87636191	87636191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	59	308	0	ENST00000277120.3:c.2356C>T	p.Arg786Ter	p.R786*	ENST00000277120		786	Cga/Tga																																																																														
ABL1	0	MSKCC	GRCh37	9	133760903	133760903	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	73	691	0	ENST00000318560.5:c.3226C>T	p.Gln1076Ter	p.Q1076*	ENST00000318560	NM_005157.4	1076	Caa/Taa																																																																														
EGFL7	0	MSKCC	GRCh37	9	139565405	139565405	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	42	547	0	ENST00000308874.7:c.575del	p.Val192GlyfsTer5	p.V192Gfs*5	ENST00000308874		192	gTg/gg																																																																														
BTK	0	MSKCC	GRCh37	X	100615676	100615676	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	15	309	0	ENST00000308731.7:c.656T>C	p.Val219Ala	p.V219A	ENST00000308731	NM_000061.2	219	gTt/gCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	127	507	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
POLE	0	MSKCC	GRCh37	12	133241978	133241978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	185	560	0	ENST00000320574.5:c.2378G>T	p.Arg793Leu	p.R793L	ENST00000320574	NM_006231.2	793	cGc/cTc																																																																														
STK11	0	MSKCC	GRCh37	19	1220493	1220497	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGT	GGCGT	-			P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	207	703	0	ENST00000326873.7:c.589_593del	p.Val197ArgfsTer67	p.V197Rfs*67	ENST00000326873	NM_000455.4	196	GGCGTg/g																																																																														
GNA11	0	MSKCC	GRCh37	19	3094695	3094695	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	109	309	0	ENST00000078429.4:c.46A>T	p.Lys16Ter	p.K16*	ENST00000078429	NM_002067.2	16	Aag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602620	10602620	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	197	680	0	ENST00000171111.5:c.958del	p.Arg320GlyfsTer8	p.R320Gfs*8	ENST00000171111	NM_203500.1	320	Cgg/gg																																																																														
TRAF2	0	MSKCC	GRCh37	9	139802655	139802655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	164	499	0	ENST00000247668.2:c.500G>T	p.Arg167Leu	p.R167L	ENST00000247668	NM_021138.3	167	cGg/cTg																																																																														
MED12	0	MSKCC	GRCh37	X	70342362	70342362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	182	531	0	ENST00000374080.3:c.1253G>T	p.Arg418Leu	p.R418L	ENST00000374080		418	cGt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	406	508	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0029168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	441	793	1	ENST00000269305.4:c.378C>A	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taA																																																																														
MLH1	0	MSKCC	GRCh37	3	37053347	37053348	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	150	467	0	ENST00000231790.2:c.588dupA	p.Gln197ThrfsTer7	p.Q197Tfs*7	ENST00000231790	NM_000249.3	194	-/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	19	416	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	77	661	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RARA	0	MSKCC	GRCh37	17	38512383	38512383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	22	469	1	ENST00000254066.5:c.1294C>T	p.Arg432Trp	p.R432W	ENST00000254066	NM_000964.3	432	Cgg/Tgg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138417921	138417921	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	40	456	0	ENST00000289153.2:c.1598del	p.Lys533SerfsTer6	p.K533Sfs*6	ENST00000289153	NM_006219.2	533	aAg/ag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	44	462	1	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	33	283	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																														
CDH1	0	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	35	462	0	ENST00000261769.5:c.1565+1G>A		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																															
EPHA3	0	MSKCC	GRCh37	3	89521664	89521664	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17801309		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	31	513	0	ENST00000336596.2:c.2741G>A	p.Arg914His	p.R914H	ENST00000336596	NM_005233.5	914	cGc/cAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573505	48573506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	27	395	0	ENST00000342988.3:c.94_95delAG	p.Ser32Ter	p.S32*	ENST00000342988	NM_005359.5	30	gGA/g																																																																														
FLT4	0	MSKCC	GRCh37	5	180055897	180055897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	43	590	0	ENST00000261937.6:c.1088del	p.Pro363ArgfsTer27	p.P363Rfs*27	ENST00000261937	NM_182925.4	363	cCg/cg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	50	730	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	33	383	4	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508535	106508535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	19	295	0	ENST00000359195.3:c.529C>T	p.Arg177Cys	p.R177C	ENST00000359195	NM_002649.2	177	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	84	519	2	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
ALK	0	MSKCC	GRCh37	2	30143052	30143052	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	37	717	1	ENST00000389048.3:c.474del	p.Glu160ArgfsTer26	p.E160Rfs*26	ENST00000389048	NM_004304.4	158	ccC/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	57	787	0	ENST00000269305.4:c.388del	p.Leu130SerfsTer40	p.L130Sfs*40	ENST00000269305	NM_001126112.2	130	Ctc/tc																																																																														
CTCF	0	MSKCC	GRCh37	16	67663406	67663406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	33	426	0	ENST00000264010.4:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000264010	NM_006565.3	603	Cgc/Tgc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	43	544	3	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433388	49433388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	34	702	2	ENST00000301067.7:c.8059C>T	p.Arg2687Ter	p.R2687*	ENST00000301067	NM_003482.3	2687	Cga/Tga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862845	9862845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	34	613	0	ENST00000330684.3:c.2458G>A	p.Val820Ile	p.V820I	ENST00000330684	NM_001134407.1	820	Gta/Ata																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38139044	38139044	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	51	606	1	ENST00000317025.8:c.3559C>T	p.Arg1187Ter	p.R1187*	ENST00000317025	NM_023034.1	1187	Cga/Tga																																																																														
RAD54L	0	MSKCC	GRCh37	1	46743940	46743940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	41	428	1	ENST00000371975.4:c.2230C>T	p.Arg744Trp	p.R744W	ENST00000371975	NM_003579.3	744	Cgg/Tgg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146944	38146945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	77	725	2	ENST00000317025.8:c.3197dup	p.Asn1066LysfsTer14	p.N1066Kfs*14	ENST00000317025	NM_023034.1	1066	aac/aaAc																																																																														
MGA	0	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	58	532	1	ENST00000219905.7:c.7306C>T	p.Arg2436Cys	p.R2436C	ENST00000219905	NM_001164273.1	2436	Cgt/Tgt																																																																														
EZH2	0	MSKCC	GRCh37	7	148544344	148544344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	45	571	0	ENST00000320356.2:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000320356	NM_004456.4	16	cGg/cAg																																																																														
AR	0	MSKCC	GRCh37	X	66941680	66941680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	32	536	0	ENST00000374690.3:c.2324G>A	p.Arg775His	p.R775H	ENST00000374690	NM_000044.3	775	cGc/cAc																																																																														
TET1	0	MSKCC	GRCh37	10	70411605	70411605	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	32	401	1	ENST00000373644.4:c.4279C>T	p.Arg1427Ter	p.R1427*	ENST00000373644	NM_030625.2	1427	Cga/Tga																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88649874	88649875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	23	411	0	ENST00000372037.3:c.128dup	p.Ser44ValfsTer27	p.S44Vfs*27	ENST00000372037	NM_004329.2	41	-/A																																																																														
SESN3	0	MSKCC	GRCh37	11	94911057	94911057	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	43	639	0	ENST00000536441.1:c.1073del	p.Asn358IlefsTer7	p.N358Ifs*7	ENST00000536441	NM_144665.3	358	aAt/at																																																																														
PGR	0	MSKCC	GRCh37	11	100999138	100999138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	40	632	0	ENST00000325455.5:c.664G>A	p.Glu222Lys	p.E222K	ENST00000325455	NM_001202474.3	222	Gag/Aag																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343443	118343445	+	inframe_deletion	In_Frame_Del	DEL	TAA	TAA	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	24	444	0	ENST00000534358.1:c.1570_1572del	p.Asn524del	p.N524del	ENST00000534358	NM_005933.3	523	agTAAt/agt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988573	36988573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	56	705	0	ENST00000354822.5:c.80G>A	p.Arg27His	p.R27H	ENST00000354822	NM_001079668.2	27	cGc/cAc																																																																														
SLX4	0	MSKCC	GRCh37	16	3658691	3658691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	80	815	0	ENST00000294008.3:c.275G>A	p.Arg92Lys	p.R92K	ENST00000294008	NM_032444.2	92	aGg/aAg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72984790	72984790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	34	543	1	ENST00000268489.5:c.2794G>A	p.Glu932Lys	p.E932K	ENST00000268489	NM_006885.3	932	Gag/Aag																																																																														
INSR	0	MSKCC	GRCh37	19	7141797	7141797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201466857		P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	56	643	1	ENST00000302850.5:c.2573C>T	p.Thr858Met	p.T858M	ENST00000302850	NM_000208.2	858	aCg/aTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211183	36211183	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	77	899	0	ENST00000222270.7:c.939del	p.Val314Ter	p.V314*	ENST00000222270	NM_014727.1	312	Aaa/aa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101152	41101153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	34	571	0	ENST00000373198.4:c.1203dup	p.Gln402AlafsTer18	p.Q402Afs*18	ENST00000373198	NM_133170.3	401	-/G																																																																														
ATR	0	MSKCC	GRCh37	3	142268420	142268420	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	37	458	0	ENST00000350721.4:c.3072T>G	p.Asn1024Lys	p.N1024K	ENST00000350721	NM_001184.3	1024	aaT/aaG																																																																														
FAT1	0	MSKCC	GRCh37	4	187540533	187540533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	31	378	0	ENST00000441802.2:c.7207G>A	p.Ala2403Thr	p.A2403T	ENST00000441802	NM_005245.3	2403	Gcc/Acc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526393	31526393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	54	972	0	ENST00000344624.3:c.647C>A	p.Pro216His	p.P216H	ENST00000344624		216	cCc/cAc																																																																														
FLT4	0	MSKCC	GRCh37	5	180057717	180057717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	47	646	0	ENST00000261937.6:c.238delG	p.Val80TrpfsTer53	p.V80Wfs*53	ENST00000261937	NM_182925.4	80	Gtg/tg																																																																														
MDC1	0	MSKCC	GRCh37	6	30681423	30681423	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	30	425	0	ENST00000376406.3:c.587+2T>C		p.X196_splice	ENST00000376406	NM_014641.2	196																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32181986	32181986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	52	741	0	ENST00000375023.3:c.2068G>T	p.Ala690Ser	p.A690S	ENST00000375023	NM_004557.3	690	Gca/Tca																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200189	138200189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	29	481	0	ENST00000237289.4:c.1607G>A	p.Cys536Tyr	p.C536Y	ENST00000237289	NM_001270507.1	536	tGc/tAc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98221972	98221972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	35	456	1	ENST00000331920.6:c.2797G>A	p.Ala933Thr	p.A933T	ENST00000331920	NM_000264.3	933	Gcg/Acg																																																																														
ATRX	0	MSKCC	GRCh37	X	76907789	76907789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	19	306	0	ENST00000373344.5:c.4372G>A	p.Glu1458Lys	p.E1458K	ENST00000373344	NM_000489.3	1458	Gag/Aag																																																																														
ATRX	0	MSKCC	GRCh37	X	76938055	76938055	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	54	635	0	ENST00000373344.5:c.2693A>G	p.Asp898Gly	p.D898G	ENST00000373344	NM_000489.3	898	gAc/gGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27093025	27093026	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	285	422	0	ENST00000324856.7:c.2957dup	p.Asp986GlufsTer21	p.D986Efs*21	ENST00000324856	NM_006015.4	986	gat/gAat																																																																														
TP53	0	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	432	647	0	ENST00000269305.4:c.826G>A	p.Ala276Thr	p.A276T	ENST00000269305	NM_001126112.2	276	Gcc/Acc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2193775	2193775	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	326	535	0	ENST00000398665.3:c.581A>G	p.Tyr194Cys	p.Y194C	ENST00000398665	NM_032482.2	194	tAt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	287	763	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851492	63851493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	65	485	1	ENST00000279873.7:c.2273dup	p.Arg759GlnfsTer13	p.R759Qfs*13	ENST00000279873	NM_032199.2	757	agt/agTt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71096112	71096115	+	frameshift_variant	Frame_Shift_Del	DEL	GGGA	GGGA	TT			P-0029172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	72	252	1	ENST00000318789.4:c.642_645delinsAA	p.Pro215ThrfsTer79	p.P215Tfs*79	ENST00000318789	NM_032682.5	214	ctTCCC/ctAA																																																																														
APC	0	MSKCC	GRCh37	5	112173902	112173902	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	103	365	0	ENST00000257430.4:c.2611G>T	p.Gly871Ter	p.G871*	ENST00000257430	NM_000038.5	871	Gga/Tga																																																																														
STAG2	0	MSKCC	GRCh37	X	123200048	123200048	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	32	171	0	ENST00000218089.9:c.2120A>G	p.Asp707Gly	p.D707G	ENST00000218089	NM_001042749.1	707	gAt/gGt																																																																														
SOX9	0	MSKCC	GRCh37	17	70119793	70119793	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AT			P-0029172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	124	544	2	ENST00000245479.2:c.795delinsAT	p.Pro266SerfsTer30	p.P266Sfs*30	ENST00000245479	NM_000346.3	265	caG/caAT																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0029173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	285	614	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89653851	89653851	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	235	494	0	ENST00000371953.3:c.150del	p.Ile50MetfsTer4	p.I50Mfs*4	ENST00000371953	NM_000314.4	50	aTt/at																																																																														
ETV6	0	MSKCC	GRCh37	12	12037444	12037444	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	426	479	0	ENST00000396373.4:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000396373	NM_001987.4	359	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573627	48573627	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	185	318	0	ENST00000342988.3:c.211T>C	p.Cys71Arg	p.C71R	ENST00000342988	NM_005359.5	71	Tgt/Cgt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11106932	11106932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	247	639	0	ENST00000344626.4:c.1637A>G	p.Lys546Arg	p.K546R	ENST00000344626	NM_003072.3	546	aAg/aGg																																																																														
ATR	0	MSKCC	GRCh37	3	142274734	142274734	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	159	336	0	ENST00000350721.4:c.2326A>G	p.Ser776Gly	p.S776G	ENST00000350721	NM_001184.3	776	Agt/Ggt																																																																														
ATR	0	MSKCC	GRCh37	3	142274749	142274749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	142	355	1	ENST00000350721.4:c.2311A>G	p.Lys771Glu	p.K771E	ENST00000350721	NM_001184.3	771	Aaa/Gaa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53246392	53246392	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	280	604	0	ENST00000375401.3:c.590del	p.Leu197HisfsTer37	p.L197Hfs*37	ENST00000375401	NM_004187.3	197	cTa/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	173	472	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID2	0	MSKCC	GRCh37	12	46124999	46124999	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	38	266	0	ENST00000334344.6:c.187-1G>T		p.X63_splice	ENST00000334344	NM_152641.2	63																																																																															
H3F3C	0	MSKCC	GRCh37	12	31944971	31944971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	110	700	0	ENST00000340398.3:c.130G>A	p.Gly44Arg	p.G44R	ENST00000340398	NM_001013699.2	44	Ggg/Agg																																																																														
INSR	0	MSKCC	GRCh37	19	7170556	7170556	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	69	434	0	ENST00000302850.5:c.1475A>T	p.Gln492Leu	p.Q492L	ENST00000302850	NM_000208.2	492	cAg/cTg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468275	50468275	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	214	566	2	ENST00000331340.3:c.1510G>T	p.Glu504Ter	p.E504*	ENST00000331340	NM_006060.4	504	Gag/Tag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8436603	8436603	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	208	515	0	ENST00000356435.5:c.4075C>T	p.Gln1359Ter	p.Q1359*	ENST00000356435		1359	Cag/Tag																																																																														
BCOR	0	MSKCC	GRCh37	X	39916458	39916458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	228	755	0	ENST00000378444.4:c.4545C>A	p.His1515Gln	p.H1515Q	ENST00000378444	NM_001123385.1	1515	caC/caA																																																																														
AMER1	0	MSKCC	GRCh37	X	63411513	63411513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	311	843	0	ENST00000330258.3:c.1654G>T	p.Gly552Trp	p.G552W	ENST00000330258	NM_152424.3	552	Ggg/Tgg																																																																														
HRAS	0	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	37	831	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
CARD11	0	MSKCC	GRCh37	7	2984021	2984021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	30	636	0	ENST00000396946.4:c.509G>A	p.Arg170His	p.R170H	ENST00000396946	NM_032415.4	170	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578456	7578464	+	inframe_deletion	In_Frame_Del	DEL	GCGGACGCG	GCGGACGCG	-			P-0029183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	297	786	0	ENST00000269305.4:c.466_474del	p.Arg156_Arg158del	p.R156_R158del	ENST00000269305	NM_001126112.2	156	CGCGTCCGC/-																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	393	648	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TBX3	0	MSKCC	GRCh37	12	115109744	115109744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	522	794	0	ENST00000257566.3:c.2134G>A	p.Ala712Thr	p.A712T	ENST00000257566	NM_016569.3	712	Gcg/Acg																																																																														
APC	0	MSKCC	GRCh37	5	112162834	112162834	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	182	419	0	ENST00000257430.4:c.1438C>T	p.Gln480Ter	p.Q480*	ENST00000257430	NM_000038.5	480	Caa/Taa																																																																														
TCF3	0	MSKCC	GRCh37	19	1621011	1621011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	545	882	2	ENST00000344749.5:c.1049C>T	p.Ser350Leu	p.S350L	ENST00000344749	NM_001136139.2	350	tCg/tTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36215975	36215975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	432	728	1	ENST00000222270.7:c.3515G>A	p.Arg1172His	p.R1172H	ENST00000222270	NM_014727.1	1172	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	297	669	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	132	335	0	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																																																														
RB1	0	MSKCC	GRCh37	13	48951053	48951053	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0029185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4	65	314	0	ENST00000267163.4:c.1216-1G>A		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																															
JAK1	0	MSKCC	GRCh37	1	65330507	65330507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	114	523	1	ENST00000342505.4:c.1139C>T	p.Ser380Phe	p.S380F	ENST00000342505	NM_002227.2	380	tCt/tTt																																																																														
MSH3	0	MSKCC	GRCh37	5	80040392	80040392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	119	703	0	ENST00000265081.6:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000265081	NM_002439.4	574	cGg/cAg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786740	3786740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	247	691	0	ENST00000262367.5:c.4471C>G	p.Gln1491Glu	p.Q1491E	ENST00000262367	NM_004380.2	1491	Caa/Gaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099881	27099881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	273	636	0	ENST00000324856.7:c.3760G>T	p.Gly1254Cys	p.G1254C	ENST00000324856	NM_006015.4	1254	Ggc/Tgc																																																																														
TSC2	0	MSKCC	GRCh37	16	2130379	2130379	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0029185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	385	743	0	ENST00000219476.3:c.3610+1G>A		p.X1204_splice	ENST00000219476	NM_000548.3	1204																																																																															
SMAD4	0	MSKCC	GRCh37	18	48573435	48573435	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	65	291	0	ENST00000342988.3:c.19A>T	p.Thr7Ser	p.T7S	ENST00000342988	NM_005359.5	7	Acg/Tcg																																																																														
E2F3	0	MSKCC	GRCh37	6	20481472	20481472	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	90	379	0	ENST00000346618.3:c.541A>T	p.Thr181Ser	p.T181S	ENST00000346618	NM_001949.4	181	Acg/Tcg																																																																														
BTK	0	MSKCC	GRCh37	X	100614299	100614299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	89	506	1	ENST00000308731.7:c.876G>T	p.Glu292Asp	p.E292D	ENST00000308731	NM_000061.2	292	gaG/gaT																																																																														
STAG2	0	MSKCC	GRCh37	X	123197755	123197755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	55	647	0	ENST00000218089.9:c.1879G>T	p.Asp627Tyr	p.D627Y	ENST00000218089	NM_001042749.1	627	Gat/Tat																																																																														
STAG2	0	MSKCC	GRCh37	X	123215315	123215315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	73	596	0	ENST00000218089.9:c.2861G>C	p.Arg954Pro	p.R954P	ENST00000218089	NM_001042749.1	954	cGt/cCt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	835	626	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0029215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	159	253	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
AXL	0	MSKCC	GRCh37	19	41762430	41762430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	440	663	0	ENST00000301178.4:c.2110C>T	p.Arg704Cys	p.R704C	ENST00000301178	NM_021913.4	704	Cgc/Tgc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56184052	56184052	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0029215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	83	308	0	ENST00000399503.3:c.4258-1G>C		p.X1420_splice	ENST00000399503	NM_005921.1	1420																																																																															
SPOP	0	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	40	474	0	ENST00000347630.2:c.373T>C	p.Phe125Leu	p.F125L	ENST00000347630	NM_001007230.1	125	Ttt/Ctt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969384	44969384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	25	351	0	ENST00000377967.4:c.4066G>A	p.Val1356Ile	p.V1356I	ENST00000377967	NM_021140.2	1356	Gta/Ata																																																																														
TP53	0	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	999	495	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121438954	121438954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	760	769	2	ENST00000257555.6:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000257555		619	Gag/Aag																																																																														
RNF43	0	MSKCC	GRCh37	17	56440957	56440957	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	243	511	0	ENST00000407977.2:c.380G>C	p.Arg127Pro	p.R127P	ENST00000407977		127	cGg/cCg																																																																														
MEN1	0	MSKCC	GRCh37	11	64575383	64575386	+	frameshift_variant	Frame_Shift_Del	DEL	TGAC	TGAC	-			P-0029227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	481	641	0	ENST00000337652.1:c.646_649del	p.Val216MetfsTer12	p.V216Mfs*12	ENST00000337652	NM_130803.2	216	GTCAat/at																																																																														
PLCG2	0	MSKCC	GRCh37	16	81929439	81929439	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	472	490	0	ENST00000359376.3:c.1100A>C	p.Lys367Thr	p.K367T	ENST00000359376	NM_002661.3	367	aAg/aCg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45872198	45872198	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	572	548	0	ENST00000391945.4:c.236A>G	p.Glu79Gly	p.E79G	ENST00000391945	NM_000400.3	79	gAg/gGg																																																																														
ALK	0	MSKCC	GRCh37	2	29416454	29416454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1973	126	681	1	ENST00000389048.3:c.4499C>T	p.Thr1500Ile	p.T1500I	ENST00000389048	NM_004304.4	1500	aCc/aTc																																																																														
CXCR4	0	MSKCC	GRCh37	2	136873410	136873410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	144	437	0	ENST00000241393.3:c.88C>A	p.Arg30Ser	p.R30S	ENST00000241393	NM_003467.2	30	Cgt/Agt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306793	41306793	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	213	276	0	ENST00000373198.4:c.866C>A	p.Pro289His	p.P289H	ENST00000373198	NM_133170.3	289	cCc/cAc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121103	29121103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	381	553	0	ENST00000328354.6:c.454C>T	p.Pro152Ser	p.P152S	ENST00000328354	NM_007194.3	152	Cct/Tct																																																																														
BAP1	0	MSKCC	GRCh37	3	52440367	52440367	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	606	497	0	ENST00000460680.1:c.685A>C	p.Asn229His	p.N229H	ENST00000460680	NM_004656.3	229	Aac/Cac																																																																														
APC	0	MSKCC	GRCh37	5	112154682	112154682	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0029227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	243	344	0	ENST00000257430.4:c.953T>A	p.Leu318Ter	p.L318*	ENST00000257430	NM_000038.5	318	tTg/tAg																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250776	26250776	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	35	279	0	ENST00000446824.2:c.58C>G	p.Gln20Glu	p.Q20E	ENST00000446824	NM_021018.2	20	Cag/Gag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	152	559	3	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	224	802	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
CIC	0	MSKCC	GRCh37	19	42791758	42791758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	179	591	3	ENST00000575354.2:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000575354	NM_015125.3	215	cGg/cAg																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045847	26045847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	150	464	0	ENST00000540144.1:c.209G>A	p.Arg70His	p.R70H	ENST00000540144	NM_003531.2	70	cGc/cAc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459890	149459890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	231	672	1	ENST00000286301.3:c.317G>A	p.Arg106Gln	p.R106Q	ENST00000286301	NM_005211.3	106	cGg/cAg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3823760	3823760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	142	492	2	ENST00000262367.5:c.2455G>A	p.Val819Met	p.V819M	ENST00000262367	NM_004380.2	819	Gtg/Atg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71015168	71015168	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202173892		P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	139	330	0	ENST00000318789.4:c.1762G>A	p.Ala588Thr	p.A588T	ENST00000318789	NM_032682.5	588	Gct/Act																																																																														
CREBBP	0	MSKCC	GRCh37	16	3801726	3801726	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	191	502	2	ENST00000262367.5:c.3779+1G>A		p.X1260_splice	ENST00000262367	NM_004380.2	1260																																																																															
KMT2D	0	MSKCC	GRCh37	12	49431760	49431760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	176	679	1	ENST00000301067.7:c.9379C>T	p.Arg3127Cys	p.R3127C	ENST00000301067	NM_003482.3	3127	Cgc/Tgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420670	49420670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	205	530	0	ENST00000301067.7:c.15079C>T	p.Arg5027Ter	p.R5027*	ENST00000301067	NM_003482.3	5027	Cga/Tga																																																																														
TSHR	0	MSKCC	GRCh37	14	81558901	81558901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	158	575	3	ENST00000298171.2:c.494C>T	p.Thr165Met	p.T165M	ENST00000298171	NM_000369.2	165	aCg/aTg																																																																														
POLD1	0	MSKCC	GRCh37	19	50905566	50905566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	263	699	0	ENST00000440232.2:c.694C>T	p.Arg232Cys	p.R232C	ENST00000440232	NM_002691.3	232	Cgt/Tgt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874092	151874093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	177	571	0	ENST00000262189.6:c.8445dupA	p.Ser2816IlefsTer6	p.S2816Ifs*6	ENST00000262189	NM_170606.2	2815	-/A																																																																														
POLD1	0	MSKCC	GRCh37	19	50921124	50921124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	199	643	1	ENST00000440232.2:c.3244C>T	p.Arg1082Cys	p.R1082C	ENST00000440232	NM_002691.3	1082	Cgc/Tgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433620	49433620	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	296	934	3	ENST00000301067.7:c.7933C>T	p.Arg2645Ter	p.R2645*	ENST00000301067	NM_003482.3	2645	Cga/Tga																																																																														
SESN3	0	MSKCC	GRCh37	11	94911881	94911881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	226	595	3	ENST00000536441.1:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000536441	NM_144665.3	350	cGa/cAa																																																																														
STK40	0	MSKCC	GRCh37	1	36823877	36823877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	151	497	0	ENST00000373129.3:c.305C>T	p.Thr102Met	p.T102M	ENST00000373129	NM_032017.1	102	aCg/aTg																																																																														
CDC73	0	MSKCC	GRCh37	1	193205400	193205400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	165	514	0	ENST00000367435.3:c.1331C>T	p.Ala444Val	p.A444V	ENST00000367435	NM_024529.4	444	gCc/gTc																																																																														
IKBKE	0	MSKCC	GRCh37	1	206653446	206653446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	193	513	0	ENST00000367120.3:c.1330C>T	p.His444Tyr	p.H444Y	ENST00000367120	NM_014002.3	444	Cac/Tac																																																																														
GATA3	0	MSKCC	GRCh37	10	8106053	8106054	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAATG			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	182	630	0	ENST00000346208.3:c.876_881dup	p.Lys292_Met293dup	p.K292_M293dup	ENST00000346208		292	-/AAAATG																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373560	118373560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	114	459	0	ENST00000534358.1:c.6953G>A	p.Ser2318Asn	p.S2318N	ENST00000534358	NM_005933.3	2318	aGc/aAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427701	49427701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	164	645	2	ENST00000301067.7:c.10787G>A	p.Arg3596Gln	p.R3596Q	ENST00000301067	NM_003482.3	3596	cGg/cAg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435129	110435129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	204	629	0	ENST00000375856.3:c.3272C>T	p.Pro1091Leu	p.P1091L	ENST00000375856	NM_003749.2	1091	cCg/cTg																																																																														
RAD51B	0	MSKCC	GRCh37	14	68292235	68292235	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200355697		P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	143	487	1	ENST00000487270.1:c.139C>T	p.Arg47Ter	p.R47*	ENST00000487270	NM_133509.3	47	Cga/Tga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779170	3779170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	36	476	1	ENST00000262367.5:c.5878C>T	p.Arg1960Trp	p.R1960W	ENST00000262367	NM_004380.2	1960	Cgg/Tgg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11118668	11118668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	234	814	0	ENST00000344626.4:c.2092G>A	p.Val698Ile	p.V698I	ENST00000344626	NM_003072.3	698	Gtc/Atc																																																																														
UPF1	0	MSKCC	GRCh37	19	18976408	18976408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	279	734	1	ENST00000262803.5:c.3058C>T	p.Arg1020Cys	p.R1020C	ENST00000262803	NM_002911.3	1020	Cgc/Tgc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223292	36223292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	307	889	4	ENST00000222270.7:c.5842G>A	p.Val1948Ile	p.V1948I	ENST00000222270	NM_014727.1	1948	Gtc/Atc																																																																														
AXL	0	MSKCC	GRCh37	19	41754476	41754476	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	126	712	0	ENST00000301178.4:c.1595A>G	p.Asp532Gly	p.D532G	ENST00000301178	NM_021913.4	532	gAc/gGc																																																																														
POLD1	0	MSKCC	GRCh37	19	50906795	50906795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	319	892	2	ENST00000440232.2:c.1183G>A	p.Gly395Ser	p.G395S	ENST00000440232	NM_002691.3	395	Ggt/Agt																																																																														
MSH6	0	MSKCC	GRCh37	2	48032085	48032086	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	126	465	0	ENST00000234420.5:c.3476dup	p.Tyr1159Ter	p.Y1159*	ENST00000234420	NM_000179.2	1159	tac/tAac																																																																														
CUL3	0	MSKCC	GRCh37	2	225379453	225379453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	192	691	2	ENST00000264414.4:c.415G>A	p.Val139Ile	p.V139I	ENST00000264414	NM_003590.4	139	Gtc/Atc																																																																														
RASA1	0	MSKCC	GRCh37	5	86686674	86686674	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	153	517	0	ENST00000274376.6:c.3118T>C	p.Tyr1040His	p.Y1040H	ENST00000274376	NM_002890.2	1040	Tat/Cat																																																																														
VEGFA	0	MSKCC	GRCh37	6	43745316	43745316	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	228	759	0	ENST00000523873.1:c.229T>G	p.Cys77Gly	p.C77G	ENST00000523873		77	Tgt/Ggt																																																																														
BRAF	0	MSKCC	GRCh37	7	140434542	140434542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	89	285	0	ENST00000288602.6:c.2156G>A	p.Arg719His	p.R719H	ENST00000288602	NM_004333.4	719	cGc/cAc																																																																														
TEK	0	MSKCC	GRCh37	9	27212732	27212732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	239	723	0	ENST00000380036.4:c.2714C>T	p.Ala905Val	p.A905V	ENST00000380036	NM_000459.3	905	gCg/gTg																																																																														
ARAF	0	MSKCC	GRCh37	X	47426492	47426492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	244	371	0	ENST00000377045.4:c.835C>T	p.Arg279Cys	p.R279C	ENST00000377045	NM_001654.4	279	Cgc/Tgc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858011	152858011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	12	132	0	ENST00000406277.2:c.604G>A	p.Gly202Arg	p.G202R	ENST00000406277	NM_152274.4	202	Gga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	94	543	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	194	638	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NF2	0	MSKCC	GRCh37	22	30050677	30050677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	121	516	2	ENST00000338641.4:c.479G>A	p.Arg160Gln	p.R160Q	ENST00000338641	NM_000268.3	160	cGg/cAg																																																																														
ARID2	0	MSKCC	GRCh37	12	46231437	46231437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	135	488	1	ENST00000334344.6:c.1277C>T	p.Thr426Met	p.T426M	ENST00000334344	NM_152641.2	426	aCg/aTg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670753	134670753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	129	434	0	ENST00000398015.3:c.664C>T	p.Arg222Trp	p.R222W	ENST00000398015	NM_004441.4	222	Cgg/Tgg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0029229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	120	434	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481599	56481599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	67	646	0	ENST00000267101.3:c.634C>T	p.Pro212Ser	p.P212S	ENST00000267101	NM_001982.3	212	Cct/Tct																																																																														
EPAS1	0	MSKCC	GRCh37	2	46609581	46609581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	189	780	0	ENST00000263734.3:c.2305C>A	p.Pro769Thr	p.P769T	ENST00000263734	NM_001430.4	769	Ccc/Acc																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45657076	45657076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	30	353	1	ENST00000407780.3:c.80C>T	p.Ala27Val	p.A27V	ENST00000407780	NM_001283052.1	27	gCg/gTg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739725	145739725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	185	606	0	ENST00000428558.2:c.1726G>A	p.Val576Met	p.V576M	ENST00000428558	NM_004260.3	576	Gtg/Atg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485266	8485266	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	44	587	1	ENST00000356435.5:c.3114G>A	p.Trp1038Ter	p.W1038*	ENST00000356435		1038	tgG/tgA																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	68	563	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	41	362	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																														
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	54	699	1	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40747087	40747087	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	82	601	0	ENST00000373198.4:c.2995T>A	p.Ser999Thr	p.S999T	ENST00000373198	NM_133170.3	999	Tcc/Acc																																																																														
PPP6C	0	MSKCC	GRCh37	9	127920582	127920582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140793926		P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	66	662	1	ENST00000373547.4:c.317G>A	p.Arg106His	p.R106H	ENST00000373547	NM_002721.4	106	cGt/cAt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910401	32910401	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	40	331	0	ENST00000380152.3:c.1910-1G>T		p.X637_splice	ENST00000380152		637																																																																															
MGA	0	MSKCC	GRCh37	15	41988359	41988360	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	85	596	0	ENST00000219905.7:c.1151_1152insT	p.Glu384AspfsTer5	p.E384Dfs*5	ENST00000219905	NM_001164273.1	384	gaa/gaTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0029242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	202	337	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0029242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	542	524	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
ARID2	0	MSKCC	GRCh37	12	46245823	46245823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	248	412	0	ENST00000334344.6:c.3917C>A	p.Pro1306His	p.P1306H	ENST00000334344	NM_152641.2	1306	cCt/cAt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729877	30729877	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0029242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	328	277	0	ENST00000359013.4:c.1473A>C	p.Glu491Asp	p.E491D	ENST00000359013	NM_001024847.2	491	gaA/gaC																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149499071	149499072	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0029242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	280	585	2	ENST00000261799.4:c.2756_2757delinsAA	p.Arg919Gln	p.R919Q	ENST00000261799	NM_002609.3	919	cGG/cAA																																																																														
PREX2	0	MSKCC	GRCh37	8	69050701	69050701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	201	384	0	ENST00000288368.4:c.4036G>A	p.Glu1346Lys	p.E1346K	ENST00000288368	NM_024870.2	1346	Gaa/Aaa																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39567803	39567803	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	34	373	0	ENST00000262039.4:c.559A>G	p.Met187Val	p.M187V	ENST00000262039	NM_002647.2	187	Atg/Gtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	78	535	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	95	286	0				ENST00000310581	NM_198253.2																																																																																
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	117	513	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
BCOR	0	MSKCC	GRCh37	X	39933353	39933353	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029245-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	40	336	1	ENST00000378444.4:c.1246C>T	p.Gln416Ter	p.Q416*	ENST00000378444	NM_001123385.1	416	Caa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	247	462	4	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139411726	139411726	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	46	474	0	ENST00000277541.6:c.1553C>T	p.Thr518Met	p.T518M	ENST00000277541	NM_017617.3	518	aCg/aTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	646	548	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	266	473	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	109	322	2	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	106	233	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
SETD2	0	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	302	413	1	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																														
FLT1	0	MSKCC	GRCh37	13	28880860	28880860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	371	504	1	ENST00000282397.4:c.3770G>A	p.Arg1257His	p.R1257H	ENST00000282397	NM_002019.4	1257	cGc/cAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970927	21970927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	52	523	0	ENST00000304494.5:c.431G>A	p.Arg144His	p.R144H	ENST00000304494	NM_000077.4	144	cGc/cAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970927	21970927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	52	523	0	ENST00000304494.5:c.431G>A	p.Arg144His	p.R144H	ENST00000304494	NM_000077.4	144	cGc/cAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	211	347	0	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	338	465	3	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
FAT1	0	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	324	554	1	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	113	320	2	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	296	483	14	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793677	89793677	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	179	347	0	ENST00000336032.3:c.752del	p.Lys251SerfsTer14	p.K251Sfs*14	ENST00000336032	NM_006813.2	249	gAa/ga																																																																														
DIS3	0	MSKCC	GRCh37	13	73337684	73337684	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	172	303	1	ENST00000377767.4:c.2032delA	p.Ile678PhefsTer59	p.I678Ffs*59	ENST00000377767	NM_014953.3	678	Att/tt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	239	430	2	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467747	50467747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	341	574	2	ENST00000331340.3:c.982C>T	p.Arg328Cys	p.R328C	ENST00000331340	NM_006060.4	328	Cgc/Tgc																																																																														
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	353	537	5	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																														
SLX4	0	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	438	751	3	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790090	40790090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	134	576	0	ENST00000373198.4:c.2641delC	p.Arg881GlyfsTer20	p.R881Gfs*20	ENST00000373198	NM_133170.3	881	Cgg/gg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	63	629	3	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944928	31944928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	31	259	0	ENST00000340398.3:c.173C>T	p.Thr58Ile	p.T58I	ENST00000340398	NM_001013699.2	58	aCc/aTc																																																																														
MEN1	0	MSKCC	GRCh37	11	64571939	64571939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	264	780	2	ENST00000337652.1:c.1715C>T	p.Ala572Val	p.A572V	ENST00000337652	NM_130803.2	572	gCc/gTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420433	49420433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	371	596	0	ENST00000301067.7:c.15316C>T	p.Arg5106Cys	p.R5106C	ENST00000301067	NM_003482.3	5106	Cgc/Tgc																																																																														
CYLD	0	MSKCC	GRCh37	16	50826572	50826572	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	174	265	1	ENST00000398568.2:c.2301delT	p.Pro768LeufsTer5	p.P768Lfs*5	ENST00000398568	NM_001042412.1	766	aTt/at																																																																														
NCOR1	0	MSKCC	GRCh37	17	15989691	15989691	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	261	396	0	ENST00000268712.3:c.3082C>T	p.Arg1028Ter	p.R1028*	ENST00000268712	NM_006311.3	1028	Cga/Tga																																																																														
ERF	0	MSKCC	GRCh37	19	42753002	42753002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	292	545	0	ENST00000222329.4:c.1262del	p.Pro421ArgfsTer18	p.P421Rfs*18	ENST00000222329	NM_006494.2	421	cCg/cg																																																																														
CIC	0	MSKCC	GRCh37	19	42797251	42797251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	79	575	0	ENST00000575354.2:c.3613C>T	p.Arg1205Trp	p.R1205W	ENST00000575354	NM_015125.3	1205	Cgg/Tgg																																																																														
SOS1	0	MSKCC	GRCh37	2	39250103	39250103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	248	597	0	ENST00000402219.2:c.1466G>A	p.Arg489His	p.R489H	ENST00000402219	NM_005633.3	489	cGt/cAt																																																																														
EPAS1	0	MSKCC	GRCh37	2	46602931	46602931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	368	585	1	ENST00000263734.3:c.989G>A	p.Arg330His	p.R330H	ENST00000263734	NM_001430.4	330	cGc/cAc																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45656803	45656803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	53	575	0	ENST00000407780.3:c.353A>G	p.Gln118Arg	p.Q118R	ENST00000407780	NM_001283052.1	118	cAa/cGa																																																																														
SETD2	0	MSKCC	GRCh37	3	47162237	47162237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	254	353	1	ENST00000409792.3:c.3889C>T	p.Arg1297Cys	p.R1297C	ENST00000409792	NM_014159.6	1297	Cgt/Tgt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71027115	71027744	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTAAGCTCTGTGGAGAAGCCTCCGATGCGGACTTGGAGAGAGTGACACTTGATACCAGATTCAACTGCAAGGAAAAAAACAACGTCTTAGAAGACCTTCAGAAAACCAGAGCAACCCAGGAACCACATCTAGCAGGAGTAACACAGAGGATGCGTGGGCACCGTTTCTTCCTCTATGTAGATGGTATGTTTACCATGAACCGAAACACACGGTGAGTCCTGCGTGAATTCACTTAGGATGCAGTGTAAGATATCTCTGGCAGCGGTCTCTTTTCCAAAGGCTGCTACATGGGTGTTTACAGGCTCAAAAAGGGGTTACCTACCTGAGGGAGTGTGAGAAACCCTGAGTCAAGACATTTATTTCATTGTGATGTCTCACCTATAGGCTTTGATCGCCCATCAGGCCTTGTCAACCTCAAAGAGGGAGAGAAGTCCTTAGCAATACCAGTGAAGCTGAGTATTTTAGGTGACACCAGTTGGGATACGCTGGTGTAGATCTGAAGAAGTGTCCAGCAGAATTTCTGCAATATGCTAGCACAACCAAAGAGCTGTTTTTACTTGATTTTTATTAAAATTAAACTTTAATAAATGTAAATGGAAAGAGCCCCATGTGGCTAGTAGCTACCATA	AGGTAAGCTCTGTGGAGAAGCCTCCGATGCGGACTTGGAGAGAGTGACACTTGATACCAGATTCAACTGCAAGGAAAAAAACAACGTCTTAGAAGACCTTCAGAAAACCAGAGCAACCCAGGAACCACATCTAGCAGGAGTAACACAGAGGATGCGTGGGCACCGTTTCTTCCTCTATGTAGATGGTATGTTTACCATGAACCGAAACACACGGTGAGTCCTGCGTGAATTCACTTAGGATGCAGTGTAAGATATCTCTGGCAGCGGTCTCTTTTCCAAAGGCTGCTACATGGGTGTTTACAGGCTCAAAAAGGGGTTACCTACCTGAGGGAGTGTGAGAAACCCTGAGTCAAGACATTTATTTCATTGTGATGTCTCACCTATAGGCTTTGATCGCCCATCAGGCCTTGTCAACCTCAAAGAGGGAGAGAAGTCCTTAGCAATACCAGTGAAGCTGAGTATTTTAGGTGACACCAGTTGGGATACGCTGGTGTAGATCTGAAGAAGTGTCCAGCAGAATTTCTGCAATATGCTAGCACAACCAAAGAGCTGTTTTTACTTGATTTTTATTAAAATTAAACTTTAATAAATGTAAATGGAAAGAGCCCCATGTGGCTAGTAGCTACCATA	-			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	109	508	0	ENST00000318789.4:c.1147-564_1212del		p.X383_splice	ENST00000318789	NM_032682.5	383																																																																															
EPHA3	0	MSKCC	GRCh37	3	89478316	89478316	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	149	379	1	ENST00000336596.2:c.2135G>A	p.Arg712His	p.R712H	ENST00000336596	NM_005233.5	712	cGt/cAt																																																																														
IL7R	0	MSKCC	GRCh37	5	35857131	35857131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	125	264	0	ENST00000303115.3:c.52G>A	p.Val18Ile	p.V18I	ENST00000303115	NM_002185.3	18	Gtt/Att																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161180	56161180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	95	375	0	ENST00000399503.3:c.1049C>T	p.Ala350Val	p.A350V	ENST00000399503	NM_005921.1	350	gCa/gTa																																																																														
PREX2	0	MSKCC	GRCh37	8	69039636	69039636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	145	423	1	ENST00000288368.4:c.3748G>A	p.Ala1250Thr	p.A1250T	ENST00000288368	NM_024870.2	1250	Gct/Act																																																																														
JAK2	0	MSKCC	GRCh37	9	5044422	5044422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	260	466	2	ENST00000381652.3:c.370T>C	p.Tyr124His	p.Y124H	ENST00000381652	NM_004972.3	124	Tat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	171	875	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0029254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	107	483	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156841514	156841514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151334385		P-0029254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	149	887	3	ENST00000524377.1:c.817C>T	p.Arg273Trp	p.R273W	ENST00000524377	NM_002529.3	273	Cgg/Tgg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25523018	25523018	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	90	777	0	ENST00000264709.3:c.167A>G	p.Lys56Arg	p.K56R	ENST00000264709	NM_175629.2	56	aAg/aGg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	13	531	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
DNMT1	0	MSKCC	GRCh37	19	10267124	10267124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	10	700	1	ENST00000340748.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000340748		432	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112179566	112179566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	10	455	3	ENST00000257430.4:c.8275C>T	p.Arg2759Cys	p.R2759C	ENST00000257430	NM_000038.5	2759	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0029273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	63	368	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	167	811	1	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
MTOR	0	MSKCC	GRCh37	1	11206818	11206818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	96	498	0	ENST00000361445.4:c.4601G>A	p.Cys1534Tyr	p.C1534Y	ENST00000361445	NM_004958.3	1534	tGt/tAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187525554	187525554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	25	375	0	ENST00000441802.2:c.10525G>A	p.Asp3509Asn	p.D3509N	ENST00000441802	NM_005245.3	3509	Gat/Aat																																																																														
PLK2	0	MSKCC	GRCh37	5	57750820	57750820	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	38	386	0	ENST00000274289.3:c.1784T>C	p.Ile595Thr	p.I595T	ENST00000274289	NM_006622.3	595	aTt/aCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0029274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	53	263	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	51	401	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916933	178916933	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	41	321	0	ENST00000263967.3:c.320A>T	p.Asn107Ile	p.N107I	ENST00000263967	NM_006218.2	107	aAc/aTc																																																																														
NRAS	0	MSKCC	GRCh37	1	115256495	115256495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	52	574	1	ENST00000369535.4:c.216G>A	p.Met72Ile	p.M72I	ENST00000369535	NM_002524.4	72	atG/atA																																																																														
PTEN	0	MSKCC	GRCh37	10	89692889	89692889	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	35	301	0	ENST00000371953.3:c.373A>T	p.Lys125Ter	p.K125*	ENST00000371953	NM_000314.4	125	Aaa/Taa																																																																														
CTCF	0	MSKCC	GRCh37	16	67645409	67645415	+	frameshift_variant	Frame_Shift_Del	DEL	TCTACGA	TCTACGA	-			P-0029274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	44	408	0	ENST00000264010.4:c.675_681del	p.Tyr226LeufsTer22	p.Y226Lfs*22	ENST00000264010	NM_006565.3	225	gTCTACGAt/gt																																																																														
BABAM1	0	MSKCC	GRCh37	19	17387400	17387400	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	75	827	0	ENST00000359435.4:c.666C>G	p.Cys222Trp	p.C222W	ENST00000359435	NM_001033549.1	222	tgC/tgG																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098803	178098803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	69	578	0	ENST00000397062.3:c.242G>T	p.Gly81Val	p.G81V	ENST00000397062	NM_006164.4	81	gGt/gTt																																																																														
APC	0	MSKCC	GRCh37	5	112164646	112164646	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	79	312	0	ENST00000257430.4:c.1720G>T	p.Glu574Ter	p.E574*	ENST00000257430	NM_000038.5	574	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	170	636	2	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	87	260	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																														
FUBP1	0	MSKCC	GRCh37	1	78428488	78428488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	101	459	1	ENST00000370768.2:c.1311C>G	p.Asp437Glu	p.D437E	ENST00000370768	NM_003902.3	437	gaC/gaG																																																																														
LATS2	0	MSKCC	GRCh37	13	21563204	21563204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	337	814	4	ENST00000382592.4:c.715G>A	p.Val239Ile	p.V239I	ENST00000382592	NM_014572.2	239	Gta/Ata																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0029280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	228	719	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0029280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	94	328	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
TCF3	0	MSKCC	GRCh37	19	1611845	1611845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	190	541	0	ENST00000344749.5:c.1817G>A	p.Arg606Gln	p.R606Q	ENST00000344749	NM_001136139.2	606	cGg/cAg																																																																														
RB1	0	MSKCC	GRCh37	13	48878076	48878084	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCACC	GCCGCCACC	-			P-0029280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	22	151	0	ENST00000267163.4:c.34_42del	p.Thr12_Ala14del	p.T12_A14del	ENST00000267163	NM_000321.2	10	GCCGCCACC/-																																																																														
SETD2	0	MSKCC	GRCh37	3	47162039	47162039	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	124	399	0	ENST00000409792.3:c.4087G>C	p.Asp1363His	p.D1363H	ENST00000409792	NM_014159.6	1363	Gac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	22	428	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577526	7577526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	53	646	0	ENST00000269305.4:c.755T>C	p.Leu252Pro	p.L252P	ENST00000269305	NM_001126112.2	252	cTc/cCc																																																																														
TP53	0	MSKCC	GRCh37	17	7577151	7577517	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	TACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAGTAAGGAGATTCCCCGCCGGGGATGTGATGAGAGGTGGATGGGTAGTAGTATGGAAGAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGA	TACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAGTAAGGAGATTCCCCGCCGGGGATGTGATGAGAGGTGGATGGGTAGTAGTATGGAAGAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGA	-			P-0029284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	182	525	0	ENST00000269305.4:c.764_787del		p.X255_splice	ENST00000269305	NM_001126112.2	255	aTCACACTGGAAGACTCCAGGTCAGGAGCCACTTGCCACCCTGCACACTGGCCTGCTGTGCCCCAGCCTCTGCTTGCCTCTGACCCCTGGGCCCACCTCTTACCGATTTCTTCCATACTACTACCCATCCACCTCTCATCACATCCCCGGCGGGGAATCTCCTTACTGCTCCCACTCAGTTTTCTTTTCTCTGGCTTTGGGACCTCTTAACCTGTGGCTTCTCCTCCACCTACCTGGAGCTGGAGCTTAGGCTCCAGAAAGGACAAGGGTGGTTGGGAGTAGATGGAGCCTGGTTTTTTAAATGGGACAGGTAGGACCTGATTTCCTTACTGCCTCTTGCTTCTCTTTTCCTATCCTGAGTAGTGGTAat/aat																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804168	46804168	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	341	666	0	ENST00000290295.7:c.839del	p.Asn280ThrfsTer102	p.N280Tfs*102	ENST00000290295	NM_006361.5	280	aAc/ac																																																																														
ASXL2	0	MSKCC	GRCh37	2	26068349	26068349	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0029284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	39	374	0	ENST00000435504.4:c.140+1del		p.X47_splice	ENST00000435504		47																																																																															
ASXL2	0	MSKCC	GRCh37	2	26068434	26068434	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0029284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	168	382	0	ENST00000435504.4:c.58-2A>G		p.X20_splice	ENST00000435504		20																																																																															
ASXL2	0	MSKCC	GRCh37	2	26101090	26101090	+	start_lost	Translation_Start_Site	SNP	A	A	C			P-0029284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	128	408	0	ENST00000435504.4:c.2T>G	p.Met1?	p.M1?	ENST00000435504		1	aTg/aGg																																																																														
E2F3	0	MSKCC	GRCh37	6	20490581	20490581	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	49	556	0	ENST00000346618.3:c.1318G>T	p.Glu440Ter	p.E440*	ENST00000346618	NM_001949.4	440	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	83	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	340	479	1	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0029288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	137	404	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0029288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	137	404	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106484	27106484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	316	605	0	ENST00000324856.7:c.6098delA	p.Lys2033ArgfsTer9	p.K2033Rfs*9	ENST00000324856	NM_006015.4	2032	gAa/ga																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828147	72828147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	94	560	0	ENST00000268489.5:c.8434G>A	p.Asp2812Asn	p.D2812N	ENST00000268489	NM_006885.3	2812	Gac/Aac																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584540	48584541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	135	374	0	ENST00000342988.3:c.714dup	p.Gln239AlafsTer25	p.Q239Afs*25	ENST00000342988	NM_005359.5	238	ttg/ttGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47041358	47041359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0029288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	352	665	0	ENST00000329236.7:c.1469_1470dup	p.Val491ThrfsTer136	p.V491Tfs*136	ENST00000329236	NM_001204466.1	490	gac/gACac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	60	324	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	55	557	1	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	987	714	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
RB1	0	MSKCC	GRCh37	13	49050884	49050884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	369	488	0	ENST00000267163.4:c.2569del	p.Arg857ValfsTer16	p.R857Vfs*16	ENST00000267163	NM_000321.2	856	gaC/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	231	728	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112174580	112174580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	34	509	0	ENST00000257430.4:c.3289G>T	p.Glu1097Ter	p.E1097*	ENST00000257430	NM_000038.5	1097	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7579440	7579440	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	246	892	0	ENST00000269305.4:c.247delG	p.Ala83ArgfsTer40	p.A83Rfs*40	ENST00000269305	NM_001126112.2	83	Gcg/cg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523645	176523645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	223	913	0	ENST00000292408.4:c.2056G>A	p.Gly686Arg	p.G686R	ENST00000292408	NM_213647.1	686	Ggg/Agg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267710	198267710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	70	446	0	ENST00000335508.6:c.1769G>T	p.Arg590Ile	p.R590I	ENST00000335508	NM_012433.2	590	aGa/aTa																																																																														
RBM10	0	MSKCC	GRCh37	X	47039888	47039888	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	249	476	0	ENST00000329236.7:c.997C>T	p.Gln333Ter	p.Q333*	ENST00000329236	NM_001204466.1	333	Cag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29657369	29657369	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	129	684	0	ENST00000358273.4:c.5665G>T	p.Glu1889Ter	p.E1889*	ENST00000358273	NM_001042492.2	1889	Gag/Tag																																																																														
ELF3	0	MSKCC	GRCh37	1	201983018	201983018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	66	947	0	ENST00000359651.3:c.867C>G	p.Asn289Lys	p.N289K	ENST00000359651		289	aaC/aaG																																																																														
AKT3	0	MSKCC	GRCh37	1	243809238	243809238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	75	517	0	ENST00000263826.5:c.386G>T	p.Gly129Val	p.G129V	ENST00000263826	NM_005465.4	129	gGa/gTa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344803	118344803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	112	473	1	ENST00000534358.1:c.2929G>T	p.Gly977Cys	p.G977C	ENST00000534358	NM_005933.3	977	Ggc/Tgc																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281653	49281653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	230	855	0	ENST00000282018.3:c.700C>A	p.Pro234Thr	p.P234T	ENST00000282018	NM_020377.2	234	Cca/Aca																																																																														
IRS2	0	MSKCC	GRCh37	13	110436516	110436516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	231	868	0	ENST00000375856.3:c.1885C>T	p.Pro629Ser	p.P629S	ENST00000375856	NM_003749.2	629	Cca/Tca																																																																														
ERCC3	0	MSKCC	GRCh37	2	128050268	128050268	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	168	597	0	ENST00000285398.2:c.389G>T	p.Gly130Val	p.G130V	ENST00000285398	NM_000122.1	130	gGg/gTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713470	40713470	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	165	668	0	ENST00000373198.4:c.4045C>G	p.Arg1349Gly	p.R1349G	ENST00000373198	NM_133170.3	1349	Cgt/Ggt																																																																														
APC	0	MSKCC	GRCh37	5	112174494	112174494	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	60	431	0	ENST00000257430.4:c.3203C>G	p.Ser1068Ter	p.S1068*	ENST00000257430	NM_000038.5	1068	tCa/tGa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149514331	149514331	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	135	542	0	ENST00000261799.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000261799	NM_002609.3	205	Tat/Gat																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522717	176522717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	169	810	0	ENST00000292408.4:c.1814C>A	p.Ser605Tyr	p.S605Y	ENST00000292408	NM_213647.1	605	tCc/tAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518430	8518430	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	49	229	0	ENST00000356435.5:c.962-1G>T		p.X321_splice	ENST00000356435		321																																																																															
FANCC	0	MSKCC	GRCh37	9	97869526	97869526	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	141	568	0	ENST00000289081.3:c.1355A>T	p.His452Leu	p.H452L	ENST00000289081	NM_000136.2	452	cAc/cTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139409106	139409106	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	200	957	0	ENST00000277541.6:c.2063A>G	p.His688Arg	p.H688R	ENST00000277541	NM_017617.3	688	cAc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0029295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1294	50	793	2	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0029297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	294	536	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
ATM	0	MSKCC	GRCh37	11	108175492	108175492	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	177	393	0	ENST00000278616.4:c.5587T>C	p.Ser1863Pro	p.S1863P	ENST00000278616	NM_000051.3	1863	Tct/Cct																																																																														
FGFR1	0	MSKCC	GRCh37	8	38272320	38272320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	263	541	0	ENST00000425967.3:c.2047G>A	p.Asp683Asn	p.D683N	ENST00000425967	NM_001174067.1	683	Gac/Aac																																																																														
PTPRT	0	MSKCC	GRCh37	20	40864896	40864896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	517	368	0	ENST00000373198.4:c.2372G>T	p.Arg791Ile	p.R791I	ENST00000373198	NM_133170.3	791	aGa/aTa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822645	72822645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149133285		P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	366	609	0	ENST00000268489.5:c.9530C>T	p.Ser3177Leu	p.S3177L	ENST00000268489	NM_006885.3	3177	tCg/tTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944410	40944410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	668	507	0	ENST00000373198.4:c.2092C>A	p.Leu698Met	p.L698M	ENST00000373198	NM_133170.3	698	Ctg/Atg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600330	10600330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	399	573	0	ENST00000171111.5:c.1525G>T	p.Gly509Trp	p.G509W	ENST00000171111	NM_203500.1	509	Ggg/Tgg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513299	106513299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	184	323	0	ENST00000359195.3:c.2203C>A	p.Gln735Lys	p.Q735K	ENST00000359195	NM_002649.2	735	Caa/Aaa																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987076	36987076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	428	560	0	ENST00000354822.5:c.613G>A	p.Glu205Lys	p.E205K	ENST00000354822	NM_001079668.2	205	Gag/Aag																																																																														
PREX2	0	MSKCC	GRCh37	8	69050700	69050700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	30	435	0	ENST00000288368.4:c.4035G>T	p.Leu1345Phe	p.L1345F	ENST00000288368	NM_024870.2	1345	ttG/ttT																																																																														
FGF3	0	MSKCC	GRCh37	11	69625457	69625457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	335	566	1	ENST00000334134.2:c.336C>A	p.Ser112Arg	p.S112R	ENST00000334134	NM_005247.2	112	agC/agA																																																																														
RB1	0	MSKCC	GRCh37	13	48955572	48955572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	177	359	0	ENST00000267163.4:c.1688G>T	p.Trp563Leu	p.W563L	ENST00000267163	NM_000321.2	563	tGg/tTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110436350	110436350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	273	415	0	ENST00000375856.3:c.2051C>T	p.Ser684Phe	p.S684F	ENST00000375856	NM_003749.2	684	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7579505	7579517	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGACCTGGGT	TCTGGACCTGGGT	-			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	423	698	0	ENST00000269305.4:c.170_182del	p.Asp57ValfsTer62	p.D57Vfs*62	ENST00000269305	NM_001126112.2	57	gACCCAGGTCCAGAt/gt																																																																														
STAT3	0	MSKCC	GRCh37	17	40489465	40489465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	312	410	1	ENST00000264657.5:c.785G>T	p.Arg262Leu	p.R262L	ENST00000264657	NM_139276.2	262	cGg/cTg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643334	52643334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	224	324	0	ENST00000394830.3:c.2562G>A	p.Met854Ile	p.M854I	ENST00000394830	NM_018313.4	854	atG/atA																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643624	52643624	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	317	451	0	ENST00000394830.3:c.2272G>T	p.Glu758Ter	p.E758*	ENST00000394830	NM_018313.4	758	Gaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112174862	112174862	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	177	294	0	ENST00000257430.4:c.3571C>G	p.Gln1191Glu	p.Q1191E	ENST00000257430	NM_000038.5	1191	Cag/Gag																																																																														
HIST1H3A	0	MSKCC	GRCh37	6	26020990	26020990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	490	375	0	ENST00000357647.3:c.273G>A	p.Met91Ile	p.M91I	ENST00000357647	NM_003529.2	91	atG/atA																																																																														
MDC1	0	MSKCC	GRCh37	6	30672866	30672866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	506	733	0	ENST00000376406.3:c.4094C>T	p.Ser1365Leu	p.S1365L	ENST00000376406	NM_014641.2	1365	tCa/tTa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139393352	139393352	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0029298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	54	579	0	ENST00000277541.6:c.6179G>T	p.Arg2060Met	p.R2060M	ENST00000277541	NM_017617.3	2060	aGg/aTg																																																																														
RB1	0	MSKCC	GRCh37	13	49039470	49039473	+	frameshift_variant	Frame_Shift_Del	DEL	CTGC	CTGC	-			P-0029299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	159	558	1	ENST00000267163.4:c.2456_2459del	p.Leu819GlnfsTer6	p.L819Qfs*6	ENST00000267163	NM_000321.2	819	CTGCca/ca																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807343	3807343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	94	431	0	ENST00000262367.5:c.3644G>A	p.Gly1215Glu	p.G1215E	ENST00000262367	NM_004380.2	1215	gGg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0029299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	142	499	0	ENST00000269305.4:c.783-1G>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0029304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	49	335	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0029304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	487	551	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																														
APC	324	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	133	215	0	ENST00000257430.4:c.3929dup	p.Ile1311AspfsTer4	p.I1311Dfs*4	ENST00000257430	NM_000038.5	1309	gaa/gAaa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223252	5223252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	260	645	2	ENST00000357368.4:c.2551C>T	p.Arg851Cys	p.R851C	ENST00000357368	NM_002850.3	851	Cgc/Tgc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	44	409	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
B2M	0	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	152	339	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	72	568	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	270	686	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198272771	198272771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	34	537	1	ENST00000335508.6:c.1190G>A	p.Arg397His	p.R397H	ENST00000335508	NM_012433.2	397	cGc/cAc																																																																														
GSK3B	0	MSKCC	GRCh37	3	119562107	119562107	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139402886		P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	75	272	1	ENST00000316626.5:c.1229C>T	p.Ala410Val	p.A410V	ENST00000316626		410	gCg/gTg																																																																														
CIC	0	MSKCC	GRCh37	19	42796955	42796955	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149948572		P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	606	856	0	ENST00000575354.2:c.3413C>T	p.Pro1138Leu	p.P1138L	ENST00000575354	NM_015125.3	1138	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	365	604	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
VHL	0	MSKCC	GRCh37	3	10191507	10191507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	348	432	0	ENST00000256474.2:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000256474	NM_000551.3	167	cGg/cAg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259173	89259173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	40	336	2	ENST00000336596.2:c.317G>A	p.Cys106Tyr	p.C106Y	ENST00000336596	NM_005233.5	106	tGc/tAc																																																																														
CIC	0	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	222	809	0	ENST00000575354.2:c.3347dupC	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385113	41385113	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	223	586	0	ENST00000373198.4:c.848T>A	p.Leu283Gln	p.L283Q	ENST00000373198	NM_133170.3	283	cTg/cAg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222978	5222978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	210	442	0	ENST00000357368.4:c.2825C>T	p.Ser942Leu	p.S942L	ENST00000357368	NM_002850.3	942	tCg/tTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214581	5214581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	182	615	0	ENST00000357368.4:c.4485G>C	p.Glu1495Asp	p.E1495D	ENST00000357368	NM_002850.3	1495	gaG/gaC																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871728	35871728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	108	444	1	ENST00000216797.5:c.778C>T	p.Arg260Cys	p.R260C	ENST00000216797	NM_020529.2	260	Cgc/Tgc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123325170	123325170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	80	424	0	ENST00000358487.5:c.158C>T	p.Ala53Val	p.A53V	ENST00000358487	NM_000141.4	53	gCg/gTg																																																																														
NSD1	0	MSKCC	GRCh37	5	176638915	176638915	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	178	569	0	ENST00000439151.2:c.3515A>C	p.Lys1172Thr	p.K1172T	ENST00000439151	NM_022455.4	1172	aAg/aCg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950303	38950303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	49	333	0	ENST00000357387.3:c.3647G>A	p.Arg1216His	p.R1216H	ENST00000357387	NM_152756.3	1216	cGt/cAt																																																																														
HGF	0	MSKCC	GRCh37	7	81392144	81392145	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	13	246	0	ENST00000222390.5:c.132dup	p.Ser45IlefsTer28	p.S45Ifs*28	ENST00000222390	NM_000601.4	44	-/A																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38184259	38184259	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	185	432	0	ENST00000317025.8:c.1697C>G	p.Ser566Cys	p.S566C	ENST00000317025	NM_023034.1	566	tCt/tGt																																																																														
PAK7	0	MSKCC	GRCh37	20	9561289	9561289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	86	386	0	ENST00000353224.5:c.493G>A	p.Ala165Thr	p.A165T	ENST00000353224	NM_177990.2	165	Gca/Aca																																																																														
MEF2B	0	MSKCC	GRCh37	19	19258521	19258521	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	139	745	1	ENST00000162023.5:c.379C>T	p.Arg127Ter	p.R127*	ENST00000162023		127	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112154771	112154771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	116	440	0	ENST00000257430.4:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000257430	NM_000038.5	348	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67645919	67645919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	216	531	2	ENST00000264010.4:c.847C>T	p.Arg283Cys	p.R283C	ENST00000264010	NM_006565.3	283	Cgt/Tgt																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944842	31944842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	167	691	1	ENST00000340398.3:c.259G>A	p.Ala87Thr	p.A87T	ENST00000340398	NM_001013699.2	87	Gca/Aca																																																																														
TSC2	0	MSKCC	GRCh37	16	2120572	2120572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	458	695	1	ENST00000219476.3:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000219476	NM_000548.3	611	cGg/cAg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212575	36212575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	408	836	2	ENST00000222270.7:c.2326C>T	p.Arg776Trp	p.R776W	ENST00000222270	NM_014727.1	776	Cgg/Tgg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123256174	123256174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	232	460	0	ENST00000358487.5:c.1735C>T	p.Arg579Trp	p.R579W	ENST00000358487	NM_000141.4	579	Cgg/Tgg																																																																														
BCL6	0	MSKCC	GRCh37	3	187446261	187446261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	125	529	1	ENST00000232014.4:c.1427C>T	p.Thr476Met	p.T476M	ENST00000232014	NM_001130845.1	476	aCg/aTg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31394129	31394129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	148	358	2	ENST00000328111.2:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000328111	NM_006892.3	806	Gaa/Aaa																																																																														
CDK12	0	MSKCC	GRCh37	17	37627217	37627217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	71	475	0	ENST00000447079.4:c.1132C>T	p.Arg378Cys	p.R378C	ENST00000447079	NM_015083.1	378	Cgc/Tgc																																																																														
DUSP4	0	MSKCC	GRCh37	8	29194635	29194635	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147027609		P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	277	846	0	ENST00000240100.2:c.1093G>A	p.Val365Ile	p.V365I	ENST00000240100	NM_001394.6	365	Gtc/Atc																																																																														
SLX4	0	MSKCC	GRCh37	16	3640200	3640200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	144	871	0	ENST00000294008.3:c.3439G>A	p.Glu1147Lys	p.E1147K	ENST00000294008	NM_032444.2	1147	Gaa/Aaa																																																																														
ARAF	0	MSKCC	GRCh37	X	47422455	47422455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	145	293	0	ENST00000377045.4:c.89G>A	p.Arg30His	p.R30H	ENST00000377045	NM_001654.4	30	cGc/cAc																																																																														
SPEN	0	MSKCC	GRCh37	1	16260969	16260969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	33	414	1	ENST00000375759.3:c.8234C>T	p.Ala2745Val	p.A2745V	ENST00000375759	NM_015001.2	2745	gCg/gTg																																																																														
LATS2	0	MSKCC	GRCh37	13	21563278	21563278	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	159	745	0	ENST00000382592.4:c.641A>G	p.Tyr214Cys	p.Y214C	ENST00000382592	NM_014572.2	214	tAc/tGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099382	27099382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	127	541	0	ENST00000324856.7:c.3619C>A	p.Pro1207Thr	p.P1207T	ENST00000324856	NM_006015.4	1207	Cca/Aca																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114903697	114903697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	205	558	0	ENST00000543371.1:c.701C>T	p.Pro234Leu	p.P234L	ENST00000543371	NM_001198531.1	234	cCg/cTg																																																																														
MEN1	0	MSKCC	GRCh37	11	64572041	64572041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	269	630	1	ENST00000337652.1:c.1613G>A	p.Ser538Asn	p.S538N	ENST00000337652	NM_130803.2	538	aGc/aAc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948527	71948527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	175	716	4	ENST00000298229.2:c.3239G>A	p.Arg1080His	p.R1080H	ENST00000298229	NM_001567.3	1080	cGt/cAt																																																																														
ARID2	0	MSKCC	GRCh37	12	46285561	46285561	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	74	215	0	ENST00000334344.6:c.4923-2A>G		p.X1641_splice	ENST00000334344	NM_152641.2	1641																																																																															
KMT2D	0	MSKCC	GRCh37	12	49447841	49447841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	648	542	0	ENST00000301067.7:c.593C>T	p.Ala198Val	p.A198V	ENST00000301067	NM_003482.3	198	gCg/gTg																																																																														
LATS2	0	MSKCC	GRCh37	13	21549433	21549433	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	185	357	0	ENST00000382592.4:c.2843del	p.Ile948ThrfsTer20	p.I948Tfs*20	ENST00000382592	NM_014572.2	948	aTc/ac																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43712824	43712824	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	299	673	0	ENST00000382044.4:c.4360C>T	p.Arg1454Ter	p.R1454*	ENST00000382044	NM_001141980.1	1454	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67654714	67654714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	41	432	0	ENST00000264010.4:c.1201C>T	p.His401Tyr	p.H401Y	ENST00000264010	NM_006565.3	401	Cat/Tat																																																																														
NF1	0	MSKCC	GRCh37	17	29652968	29652968	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	70	401	0	ENST00000358273.4:c.4966A>G	p.Thr1656Ala	p.T1656A	ENST00000358273	NM_001042492.2	1656	Aca/Gca																																																																														
NF1	0	MSKCC	GRCh37	17	29685497	29685497	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	22	260	0	ENST00000358273.4:c.7971-1G>T		p.X2657_splice	ENST00000358273	NM_001042492.2	2657																																																																															
MAP2K2	0	MSKCC	GRCh37	19	4123850	4123850	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	70	333	0	ENST00000262948.5:c.23T>C	p.Val8Ala	p.V8A	ENST00000262948	NM_030662.3	8	gTg/gCg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5245898	5245898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	270	822	0	ENST00000357368.4:c.877G>A	p.Val293Met	p.V293M	ENST00000357368	NM_002850.3	293	Gtg/Atg																																																																														
CARM1	0	MSKCC	GRCh37	19	11024650	11024650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	272	449	1	ENST00000327064.4:c.767C>T	p.Ser256Leu	p.S256L	ENST00000327064	NM_199141.1	256	tCg/tTg																																																																														
UPF1	0	MSKCC	GRCh37	19	18966781	18966781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	346	757	3	ENST00000262803.5:c.1592C>T	p.Thr531Met	p.T531M	ENST00000262803	NM_002911.3	531	aCg/aTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36229069	36229069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	208	656	2	ENST00000222270.7:c.7849C>T	p.Arg2617Trp	p.R2617W	ENST00000222270	NM_014727.1	2617	Cgg/Tgg																																																																														
CIC	0	MSKCC	GRCh37	19	42791224	42791224	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	71	752	0	ENST00000575354.2:c.284A>C	p.Glu95Ala	p.E95A	ENST00000575354	NM_015125.3	95	gAg/gCg																																																																														
POLD1	0	MSKCC	GRCh37	19	50920475	50920475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	176	483	1	ENST00000440232.2:c.3167C>T	p.Thr1056Met	p.T1056M	ENST00000440232	NM_002691.3	1056	aCg/aTg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469632	25469632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	265	535	1	ENST00000264709.3:c.1136G>A	p.Arg379His	p.R379H	ENST00000264709	NM_175629.2	379	cGc/cAc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99162524	99162524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	68	287	0	ENST00000074304.5:c.1042G>A	p.Asp348Asn	p.D348N	ENST00000074304	NM_001134224.1	348	Gat/Aat																																																																														
PAK7	0	MSKCC	GRCh37	20	9561523	9561523	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs201196548		P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	80	442	0	ENST00000353224.5:c.259G>C	p.Glu87Gln	p.E87Q	ENST00000353224	NM_177990.2	87	Gag/Cag																																																																														
TOP1	0	MSKCC	GRCh37	20	39690075	39690075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	64	317	0	ENST00000361337.2:c.100C>T	p.Arg34Trp	p.R34W	ENST00000361337	NM_003286.2	34	Cgg/Tgg																																																																														
NF2	0	MSKCC	GRCh37	22	30057255	30057255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	120	549	0	ENST00000338641.4:c.737C>A	p.Pro246His	p.P246H	ENST00000338641	NM_000268.3	246	cCt/cAt																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114680	73114680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	51	426	1	ENST00000356692.5:c.1061C>T	p.Ala354Val	p.A354V	ENST00000356692		354	gCt/gTt																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665096	138665096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	23	259	0	ENST00000330315.3:c.469C>G	p.Pro157Ala	p.P157A	ENST00000330315	NM_023067.3	157	Ccc/Gcc																																																																														
FAT1	0	MSKCC	GRCh37	4	187549374	187549374	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	114	535	0	ENST00000441802.2:c.4744T>G	p.Leu1582Val	p.L1582V	ENST00000441802	NM_005245.3	1582	Ttg/Gtg																																																																														
FAT1	0	MSKCC	GRCh37	4	187549445	187549445	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	110	483	0	ENST00000441802.2:c.4673A>G	p.His1558Arg	p.H1558R	ENST00000441802	NM_005245.3	1558	cAc/cGc																																																																														
APC	0	MSKCC	GRCh37	5	112128213	112128213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	51	345	0	ENST00000257430.4:c.716C>T	p.Ala239Val	p.A239V	ENST00000257430	NM_000038.5	239	gCa/gTa																																																																														
APC	0	MSKCC	GRCh37	5	112170683	112170683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	66	360	0	ENST00000257430.4:c.1779G>T	p.Trp593Cys	p.W593C	ENST00000257430	NM_000038.5	593	tgG/tgT																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056104	26056104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	120	298	0	ENST00000343677.2:c.553G>A	p.Ala185Thr	p.A185T	ENST00000343677	NM_005319.3	185	Gct/Act																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225435	26225435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	75	223	1	ENST00000360408.1:c.53G>A	p.Arg18His	p.R18H	ENST00000360408	NM_003532.2	18	cGc/cAc																																																																														
LATS1	0	MSKCC	GRCh37	6	150004441	150004442	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	126	425	0	ENST00000253339.5:c.1783_1784del	p.Lys595GlufsTer3	p.K595Efs*3	ENST00000253339		595	AAg/g																																																																														
PREX2	0	MSKCC	GRCh37	8	68984741	68984741	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	44	271	0	ENST00000288368.4:c.1505A>T	p.Tyr502Phe	p.Y502F	ENST00000288368	NM_024870.2	502	tAc/tTc																																																																														
AGO2	0	MSKCC	GRCh37	8	141545613	141545613	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	218	754	0	ENST00000220592.5:c.2225A>G	p.His742Arg	p.H742R	ENST00000220592	NM_012154.3	742	cAc/cGc																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841243	15841243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	90	155	0	ENST00000307771.7:c.1327A>G	p.Ser443Gly	p.S443G	ENST00000307771	NM_005089.3	443	Agc/Ggc																																																																														
STAG2	0	MSKCC	GRCh37	X	123196821	123196821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	18	226	0	ENST00000218089.9:c.1708G>A	p.Ala570Thr	p.A570T	ENST00000218089	NM_001042749.1	570	Gcc/Acc																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988238	36988240	+	missense_variant	Missense_Mutation	ONP	AGG	AGG	GGA			P-0029311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	169	428	2	ENST00000354822.5:c.413_415delinsTCC	p.Ala138_Ser139delinsValPro	p.A138_S139delinsVP	ENST00000354822	NM_001079668.2	138	gCCTct/gTCCct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0029314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	614	673	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424138	49424138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200638996		P-0029314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	323	624	2	ENST00000301067.7:c.13924G>A	p.Val4642Ile	p.V4642I	ENST00000301067	NM_003482.3	4642	Gtc/Atc																																																																														
YAP1	0	MSKCC	GRCh37	11	102076766	102076766	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	112	563	0	ENST00000282441.5:c.946del	p.Glu316ArgfsTer5	p.E316Rfs*5	ENST00000282441	NM_001130145.2	315	aaG/aa																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732433	74732456	+	inframe_deletion	In_Frame_Del	DEL	GACCGAGATCGAGAACGAGTGCGG	GACCGAGATCGAGAACGAGTGCGG	-			P-0029314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	100	296	0	ENST00000359995.5:c.453_476del	p.Arg152_Ser159del	p.R152_S159del	ENST00000359995	NM_001195427.1	151	tcCCGCACTCGTTCTCGATCTCGGTCg/tcg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100934	41100934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	164	474	1	ENST00000373198.4:c.1422G>T	p.Glu474Asp	p.E474D	ENST00000373198	NM_133170.3	474	gaG/gaT																																																																														
SETD2	0	MSKCC	GRCh37	3	47142976	47142976	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029315-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	106	302	0	ENST00000409792.3:c.4987del	p.Thr1663ArgfsTer42	p.T1663Rfs*42	ENST00000409792	NM_014159.6	1663	Acg/cg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105886	27105887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0029315-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	38	245	0	ENST00000324856.7:c.5501_5502dup	p.Gln1835CysfsTer49	p.Q1835Cfs*49	ENST00000324856	NM_006015.4	1833	cgt/cGTgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0029319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	218	646	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55127487	55127487	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759729258		P-0029319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	115	445	1	ENST00000257290.5:c.275C>T	p.Ala92Val	p.A92V	ENST00000257290	NM_006206.4	92	gCg/gTg																																																																														
RIT1	0	MSKCC	GRCh37	1	155874594	155874614	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTACAGGAGGGAAGAAAGG	TTCTACAGGAGGGAAGAAAGG	-			P-0029319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	51	428	0	ENST00000368323.3:c.164-19_165del		p.X55_splice	ENST00000368323	NM_006912.5	55																																																																															
NTRK3	0	MSKCC	GRCh37	15	88476327	88476327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	78	598	0	ENST00000360948.2:c.1805A>G	p.Lys602Arg	p.K602R	ENST00000360948	NM_001012338.2	602	aAg/aGg																																																																														
PRDM1	0	MSKCC	GRCh37	6	106552876	106552876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	41	704	0	ENST00000369096.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000369096	NM_001198.3	281	Gat/Tat																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509672	106509672	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	35	523	0	ENST00000359195.3:c.1666G>T	p.Glu556Ter	p.E556*	ENST00000359195	NM_002649.2	556	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	272	347	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	417	507	0	ENST00000269305.4:c.581T>C	p.Leu194Pro	p.L194P	ENST00000269305	NM_001126112.2	194	cTt/cCt																																																																														
APC	0	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	197	285	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603006	48603006	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0029321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	184	231	0	ENST00000342988.3:c.1309-2A>G		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																															
PTPRT	0	MSKCC	GRCh37	20	40714418	40714418	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	116	431	0	ENST00000373198.4:c.3979A>T	p.Ile1327Phe	p.I1327F	ENST00000373198	NM_133170.3	1327	Atc/Ttc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	138	389	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	147	229	0				ENST00000310581	NM_198253.2																																																																																
ID3	0	MSKCC	GRCh37	1	23885731	23885731	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	277	541	0	ENST00000374561.5:c.187C>T	p.Gln63Ter	p.Q63*	ENST00000374561	NM_002167.4	63	Cag/Tag																																																																														
GATA3	0	MSKCC	GRCh37	10	8100463	8100463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	348	640	0	ENST00000346208.3:c.437C>T	p.Ala146Val	p.A146V	ENST00000346208		146	gCc/gTc																																																																														
GNA11	0	MSKCC	GRCh37	19	3121064	3121064	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	271	654	0	ENST00000078429.4:c.967A>G	p.Ile323Val	p.I323V	ENST00000078429	NM_002067.2	323	Atc/Gtc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	110	254	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533904	63533904	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201460658		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	107	388	0	ENST00000307078.5:c.1250C>T	p.Ala417Val	p.A417V	ENST00000307078	NM_004655.3	417	gCg/gTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	125	577	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
SPEN	0	MSKCC	GRCh37	1	16258927	16258928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	189	759	0	ENST00000375759.3:c.6198dup	p.Pro2067ThrfsTer4	p.P2067Tfs*4	ENST00000375759	NM_015001.2	2064	-/A																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	39	470	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	84	331	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
JAK1	0	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	107	331	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
ETV1	0	MSKCC	GRCh37	7	13971195	13971195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	109	350	2	ENST00000405192.2:c.734C>T	p.Ala245Val	p.A245V	ENST00000405192	NM_001163147.1	245	gCg/gTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	47	556	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
CIC	0	MSKCC	GRCh37	19	42799060	42799060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	170	751	0	ENST00000575354.2:c.4544G>A	p.Arg1515His	p.R1515H	ENST00000575354	NM_015125.3	1515	cGc/cAc																																																																														
ARID2	0	MSKCC	GRCh37	12	46123836	46123836	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	150	243	1	ENST00000334344.6:c.102T>A	p.Phe34Leu	p.F34L	ENST00000334344	NM_152641.2	34	ttT/ttA																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	41	493	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
TCF3	0	MSKCC	GRCh37	19	1615691	1615691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141432924		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	153	699	2	ENST00000344749.5:c.1580G>A	p.Arg527Gln	p.R527Q	ENST00000344749	NM_001136139.2	527	cGg/cAg																																																																														
ABL1	0	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	131	704	0	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7989345	7989345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	138	566	1	ENST00000319144.4:c.341G>A	p.Arg114Gln	p.R114Q	ENST00000319144	NM_001139.2	114	cGg/cAg																																																																														
FLT4	0	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	102	572	3	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																														
NF1	0	MSKCC	GRCh37	17	29654856	29654856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	62	277	1	ENST00000358273.4:c.5608C>T	p.Arg1870Trp	p.R1870W	ENST00000358273	NM_001042492.2	1870	Cgg/Tgg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480396	89480396	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	49	261	0	ENST00000336596.2:c.2233C>T	p.Arg745Ter	p.R745*	ENST00000336596	NM_005233.5	745	Cga/Tga																																																																														
MET	0	MSKCC	GRCh37	7	116398625	116398625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45587940		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	116	445	0	ENST00000397752.3:c.2215C>T	p.Arg739Cys	p.R739C	ENST00000397752	NM_000245.2	739	Cgt/Tgt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	107	438	3	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	181	790	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
KMT2A	0	MSKCC	GRCh37	11	118347553	118347553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	111	386	1	ENST00000534358.1:c.3190C>T	p.Arg1064Ter	p.R1064*	ENST00000534358	NM_005933.3	1064	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	143	681	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
EPHA5	0	MSKCC	GRCh37	4	66286255	66286255	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	79	340	0	ENST00000273854.3:c.1431del	p.Ile480LeufsTer21	p.I480Lfs*21	ENST00000273854	NM_004439.5	477	aaA/aa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830807	72830807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	144	551	3	ENST00000268489.5:c.5774del	p.Gly1925ValfsTer72	p.G1925Vfs*72	ENST00000268489	NM_006885.3	1925	gGt/gt																																																																														
SHOC2	0	MSKCC	GRCh37	10	112771563	112771563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	30	397	1	ENST00000369452.4:c.1736G>A	p.Arg579His	p.R579H	ENST00000369452	NM_007373.3	579	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7574030	7574030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	148	463	1	ENST00000269305.4:c.997C>T	p.Arg333Cys	p.R333C	ENST00000269305	NM_001126112.2	333	Cgt/Tgt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99478548	99478548	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	70	276	1	ENST00000268035.6:c.3190C>T	p.Arg1064Ter	p.R1064*	ENST00000268035	NM_000875.3	1064	Cga/Tga																																																																														
SLX4	0	MSKCC	GRCh37	16	3656525	3656525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138615800		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	169	635	0	ENST00000294008.3:c.710G>A	p.Arg237Gln	p.R237Q	ENST00000294008	NM_032444.2	237	cGg/cAg																																																																														
CIC	0	MSKCC	GRCh37	19	42794869	42794869	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	82	585	0	ENST00000575354.2:c.1953delC	p.Ala652ProfsTer76	p.A652Pfs*76	ENST00000575354	NM_015125.3	650	gCc/gc																																																																														
INSR	0	MSKCC	GRCh37	19	7122996	7122996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	139	583	0	ENST00000302850.5:c.3263G>A	p.Arg1088His	p.R1088H	ENST00000302850	NM_000208.2	1088	cGc/cAc																																																																														
SESN2	0	MSKCC	GRCh37	1	28600661	28600661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	160	503	0	ENST00000253063.3:c.1012C>T	p.Arg338Trp	p.R338W	ENST00000253063	NM_031459.4	338	Cgg/Tgg																																																																														
JAK1	0	MSKCC	GRCh37	1	65305357	65305357	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	119	531	2	ENST00000342505.4:c.2771del	p.Lys924ArgfsTer6	p.K924Rfs*6	ENST00000342505	NM_002227.2	924	aAg/ag																																																																														
INPPL1	0	MSKCC	GRCh37	11	71946379	71946379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	182	667	1	ENST00000298229.2:c.2543C>T	p.Thr848Met	p.T848M	ENST00000298229	NM_001567.3	848	aCg/aTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343804	118343804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	139	475	1	ENST00000534358.1:c.1930C>T	p.Arg644Cys	p.R644C	ENST00000534358	NM_005933.3	644	Cgc/Tgc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343849	118343849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	63	480	0	ENST00000534358.1:c.1975G>A	p.Glu659Lys	p.E659K	ENST00000534358	NM_005933.3	659	Gag/Aag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49422892	49422892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	144	598	0	ENST00000301067.7:c.14203C>T	p.Arg4735Trp	p.R4735W	ENST00000301067	NM_003482.3	4735	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438655	49438655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	144	593	0	ENST00000301067.7:c.4835G>A	p.Arg1612His	p.R1612H	ENST00000301067	NM_003482.3	1612	cGc/cAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440420	49440420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	169	641	0	ENST00000301067.7:c.4390G>A	p.Val1464Ile	p.V1464I	ENST00000301067	NM_003482.3	1464	Gtc/Atc																																																																														
MSI1	0	MSKCC	GRCh37	12	120794763	120794763	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	199	674	0	ENST00000257552.2:c.594del	p.Arg199GlyfsTer50	p.R199Gfs*50	ENST00000257552	NM_002442.3	198	ggG/gg																																																																														
DIS3	0	MSKCC	GRCh37	13	73342975	73342975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	170	398	0	ENST00000377767.4:c.1831C>T	p.Arg611Cys	p.R611C	ENST00000377767	NM_014953.3	611	Cgt/Tgt																																																																														
IRS2	0	MSKCC	GRCh37	13	110435832	110435832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	101	342	0	ENST00000375856.3:c.2569G>A	p.Gly857Ser	p.G857S	ENST00000375856	NM_003749.2	857	Ggc/Agc																																																																														
RAD51B	0	MSKCC	GRCh37	14	68301899	68301899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	142	414	0	ENST00000487270.1:c.301G>A	p.Gly101Arg	p.G101R	ENST00000487270	NM_133509.3	101	Gga/Aga																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43784245	43784245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143693242		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	53	648	0	ENST00000382044.4:c.241G>A	p.Gly81Ser	p.G81S	ENST00000382044	NM_001141980.1	81	Ggt/Agt																																																																														
TSC2	0	MSKCC	GRCh37	16	2134569	2134569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	120	730	0	ENST00000219476.3:c.4351del	p.Arg1451AlafsTer25	p.R1451Afs*25	ENST00000219476	NM_000548.3	1449	tCc/tc																																																																														
SLX4	0	MSKCC	GRCh37	16	3640370	3640370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	36	761	1	ENST00000294008.3:c.3269C>T	p.Thr1090Met	p.T1090M	ENST00000294008	NM_032444.2	1090	aCg/aTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827463	72827463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	153	584	0	ENST00000268489.5:c.9118C>T	p.Arg3040Cys	p.R3040C	ENST00000268489	NM_006885.3	3040	Cgt/Tgt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829115	72829115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	30	490	0	ENST00000268489.5:c.7466del	p.Pro2489LeufsTer39	p.P2489Lfs*39	ENST00000268489	NM_006885.3	2489	cCt/ct																																																																														
NCOR1	0	MSKCC	GRCh37	17	16004570	16004571	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	29	318	0	ENST00000268712.3:c.2683_2684del	p.Arg895AlafsTer52	p.R895Afs*52	ENST00000268712	NM_006311.3	895	AGg/g																																																																														
FLCN	0	MSKCC	GRCh37	17	17125885	17125885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	127	555	0	ENST00000285071.4:c.709G>A	p.Ala237Thr	p.A237T	ENST00000285071	NM_144997.5	237	Gcc/Acc																																																																														
NF1	0	MSKCC	GRCh37	17	29677260	29677262	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	23	377	0	ENST00000358273.4:c.7387_7389del	p.Leu2463del	p.L2463del	ENST00000358273	NM_001042492.2	2461	CTT/-																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879706	37879706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	89	458	2	ENST00000269571.5:c.2081C>T	p.Thr694Met	p.T694M	ENST00000269571		694	aCg/aTg																																																																														
RNF43	0	MSKCC	GRCh37	17	56436035	56436035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	88	408	1	ENST00000407977.2:c.1102C>T	p.Arg368Trp	p.R368W	ENST00000407977		368	Cgg/Tgg																																																																														
RNF43	0	MSKCC	GRCh37	17	56438199	56438199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	139	662	0	ENST00000407977.2:c.794G>A	p.Ser265Asn	p.S265N	ENST00000407977		265	aGc/aAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097092	11097092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	102	637	2	ENST00000344626.4:c.583C>T	p.Pro195Ser	p.P195S	ENST00000344626	NM_003072.3	195	Ccc/Tcc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15308365	15308365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	65	649	2	ENST00000263388.2:c.143C>T	p.Pro48Leu	p.P48L	ENST00000263388	NM_000435.2	48	cCg/cTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223892	36223892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	145	758	0	ENST00000222270.7:c.6442C>T	p.Pro2148Ser	p.P2148S	ENST00000222270	NM_014727.1	2148	Ccc/Tcc																																																																														
ERF	0	MSKCC	GRCh37	19	42753717	42753717	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	158	738	0	ENST00000222329.4:c.547C>T	p.Arg183Ter	p.R183*	ENST00000222329	NM_006494.2	183	Cga/Tga																																																																														
POLD1	0	MSKCC	GRCh37	19	50906845	50906845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	83	487	0	ENST00000440232.2:c.1233G>T	p.Gln411His	p.Q411H	ENST00000440232	NM_002691.3	411	caG/caT																																																																														
ERCC3	0	MSKCC	GRCh37	2	128015227	128015227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	130	439	0	ENST00000285398.2:c.2294G>A	p.Arg765Gln	p.R765Q	ENST00000285398	NM_000122.1	765	cGg/cAg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62324311	62324311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	138	604	5	ENST00000508582.2:c.2878G>A	p.Gly960Ser	p.G960S	ENST00000508582		960	Ggc/Agc																																																																														
PPARG	0	MSKCC	GRCh37	3	12421274	12421274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149324518		P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	150	565	0	ENST00000287820.6:c.154G>A	p.Val52Ile	p.V52I	ENST00000287820	NM_015869.4	52	Gta/Ata																																																																														
SETD2	0	MSKCC	GRCh37	3	47164507	47164507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	93	345	0	ENST00000409792.3:c.1619G>A	p.Arg540Gln	p.R540Q	ENST00000409792	NM_014159.6	540	cGa/cAa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71064782	71064782	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	130	403	0	ENST00000318789.4:c.892del	p.His298IlefsTer27	p.H298Ifs*27	ENST00000318789	NM_032682.5	298	Cat/at																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73047240	73047240	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	122	381	1	ENST00000356692.5:c.51delG	p.Lys19ArgfsTer14	p.K19Rfs*14	ENST00000356692		16	aGg/ag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391207	89391207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	139	374	0	ENST00000336596.2:c.1273T>A	p.Phe425Ile	p.F425I	ENST00000336596	NM_005233.5	425	Ttt/Att																																																																														
FGFR3	0	MSKCC	GRCh37	4	1801031	1801031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	157	717	2	ENST00000260795.2:c.160G>A	p.Gly54Arg	p.G54R	ENST00000260795		54	Ggg/Agg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356347	66356347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	117	448	0	ENST00000273854.3:c.1150G>A	p.Gly384Ser	p.G384S	ENST00000273854	NM_004439.5	384	Ggt/Agt																																																																														
TET2	0	MSKCC	GRCh37	4	106157927	106157929	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	89	309	0	ENST00000380013.4:c.2830_2832del	p.Lys944del	p.K944del	ENST00000380013	NM_001127208.2	943	cAGAag/cag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247369	153247369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	96	304	0	ENST00000281708.4:c.1433C>A	p.Ser478Tyr	p.S478Y	ENST00000281708	NM_033632.3	478	tCt/tAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187538953	187538956	+	frameshift_variant	Frame_Shift_Del	DEL	CTCA	CTCA	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	106	398	0	ENST00000441802.2:c.8784_8787del	p.Ser2928ArgfsTer8	p.S2928Rfs*8	ENST00000441802	NM_005245.3	2928	agTGAG/ag																																																																														
MSH3	0	MSKCC	GRCh37	5	79966006	79966006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	142	520	2	ENST00000265081.6:c.670C>T	p.Arg224Trp	p.R224W	ENST00000265081	NM_002439.4	224	Cgg/Tgg																																																																														
PNRC1	0	MSKCC	GRCh37	6	89791150	89791151	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	48	116	0	ENST00000336032.3:c.539_540del	p.Glu180GlyfsTer27	p.E180Gfs*27	ENST00000336032	NM_006813.2	179	aaAGag/aaag																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956549	93956549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	32	318	0	ENST00000369303.4:c.2687A>G	p.Asn896Ser	p.N896S	ENST00000369303	NM_004440.3	896	aAc/aGc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38139035	38139035	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	129	542	2	ENST00000317025.8:c.3568C>T	p.Arg1190Ter	p.R1190*	ENST00000317025	NM_023034.1	1190	Cga/Tga																																																																														
AGO2	0	MSKCC	GRCh37	8	141595345	141595345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	148	618	2	ENST00000220592.5:c.88G>A	p.Asp30Asn	p.D30N	ENST00000220592	NM_012154.3	30	Gac/Aac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8460468	8460468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	41	499	1	ENST00000356435.5:c.3818C>A	p.Pro1273His	p.P1273H	ENST00000356435		1273	cCt/cAt																																																																														
ABL1	0	MSKCC	GRCh37	9	133730436	133730436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	116	373	1	ENST00000318560.5:c.502G>A	p.Glu168Lys	p.E168K	ENST00000318560	NM_005157.4	168	Gaa/Aaa																																																																														
ATRX	0	MSKCC	GRCh37	X	76855027	76855027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	94	194	0	ENST00000373344.5:c.5809G>A	p.Gly1937Arg	p.G1937R	ENST00000373344	NM_000489.3	1937	Ggg/Agg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0029324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	189	448	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	482	594	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197811	66197811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	25	295	0	ENST00000273854.3:c.2888G>T	p.Gly963Val	p.G963V	ENST00000273854	NM_004439.5	963	gGa/gTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	423	343	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	262	251	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	693	392	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
LATS2	0	MSKCC	GRCh37	13	21562870	21562870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	375	390	0	ENST00000382592.4:c.1049C>T	p.Pro350Leu	p.P350L	ENST00000382592	NM_014572.2	350	cCc/cTc																																																																														
PMS1	0	MSKCC	GRCh37	2	190742022	190742022	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	105	341	0	ENST00000441310.2:c.2659C>T	p.Gln887Ter	p.Q887*	ENST00000441310	NM_000534.4	887	Caa/Taa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55143560	55143560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	35	213	0	ENST00000257290.5:c.1792G>A	p.Val598Ile	p.V598I	ENST00000257290	NM_006206.4	598	Gtc/Atc																																																																														
CARD11	0	MSKCC	GRCh37	7	2983862	2983862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	458	365	1	ENST00000396946.4:c.668G>A	p.Arg223Gln	p.R223Q	ENST00000396946	NM_032415.4	223	cGa/cAa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157517301	157517302	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0029330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	88	267	0	ENST00000346085.5:c.3865_3866delinsT	p.Pro1289LeufsTer8	p.P1289Lfs*8	ENST00000346085	NM_020732.3	1289	CCt/Tt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912060	32912060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	140	547	1	ENST00000380152.3:c.3568C>T	p.Arg1190Trp	p.R1190W	ENST00000380152		1190	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7579316	7579317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	376	489	0	ENST00000269305.4:c.370dupT	p.Cys124LeufsTer25	p.C124Lfs*25	ENST00000269305	NM_001126112.2	124	tgc/tTgc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62292679	62292679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1306	151	554	2	ENST00000508582.2:c.131C>T	p.Thr44Met	p.T44M	ENST00000508582		44	aCg/aTg																																																																														
PARK2	0	MSKCC	GRCh37	6	162622258	162622258	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	83	334	1	ENST00000366898.1:c.439T>A	p.Tyr147Asn	p.Y147N	ENST00000366898	NM_004562.2	147	Tat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0029332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	81	307	0				ENST00000310581	NM_198253.2																																																																																
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	83	219	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0029332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	184	512	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306689	41306689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	190	485	0	ENST00000373198.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000373198	NM_133170.3	324	Gaa/Aaa																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041527	14041527	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	128	352	0	ENST00000311895.7:c.2074C>T	p.Arg692Ter	p.R692*	ENST00000311895	NM_005236.2	692	Cga/Tga																																																																														
GLI1	0	MSKCC	GRCh37	12	57859571	57859571	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	167	452	0	ENST00000228682.2:c.625G>A	p.Asp209Asn	p.D209N	ENST00000228682	NM_005269.2	209	Gat/Aat																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675118	40675118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	281	608	0	ENST00000249776.8:c.82C>T	p.Pro28Ser	p.P28S	ENST00000249776	NM_033286.3	28	Ccg/Tcg																																																																														
MGA	0	MSKCC	GRCh37	15	42049996	42049996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	142	331	0	ENST00000219905.7:c.7150C>T	p.His2384Tyr	p.H2384Y	ENST00000219905	NM_001164273.1	2384	Cac/Tac																																																																														
SLX4	0	MSKCC	GRCh37	16	3639987	3639988	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0029332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	191	605	0	ENST00000294008.3:c.3651_3652delinsAA	p.Asp1218Asn	p.D1218N	ENST00000294008	NM_032444.2	1217	gaGGat/gaAAat																																																																														
MALT1	0	MSKCC	GRCh37	18	56401556	56401556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	104	332	0	ENST00000348428.3:c.1418C>T	p.Thr473Ile	p.T473I	ENST00000348428	NM_006785.3	473	aCc/aTc																																																																														
CIC	0	MSKCC	GRCh37	19	42797804	42797804	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141205881		P-0029332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	231	565	0	ENST00000575354.2:c.3856C>T	p.Arg1286Cys	p.R1286C	ENST00000575354	NM_015125.3	1286	Cgt/Tgt																																																																														
PARK2	0	MSKCC	GRCh37	6	162683695	162683695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	56	379	0	ENST00000366898.1:c.274G>A	p.Ala92Thr	p.A92T	ENST00000366898	NM_004562.2	92	Gcg/Acg																																																																														
ARAF	0	MSKCC	GRCh37	X	47422659	47422659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11551157		P-0029332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	215	498	0	ENST00000377045.4:c.131C>T	p.Ser44Phe	p.S44F	ENST00000377045	NM_001654.4	44	tCt/tTt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812338	212812338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	66	189	0	ENST00000342788.4:c.238G>T	p.Val80Phe	p.V80F	ENST00000342788	NM_005235.2	80	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	162	380	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0029334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	232	294	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214591	5214591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	101	427	0	ENST00000357368.4:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000357368	NM_002850.3	1492	cGg/cAg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8389324	8389324	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	238	407	0	ENST00000356435.5:c.4294C>G	p.Leu1432Val	p.L1432V	ENST00000356435		1432	Ctc/Gtc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98242737	98242737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	165	301	0	ENST00000331920.6:c.880C>T	p.Arg294Cys	p.R294C	ENST00000331920	NM_000264.3	294	Cgc/Tgc																																																																														
CDK12	0	MSKCC	GRCh37	17	37682318	37682318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	57	409	0	ENST00000447079.4:c.3509C>T	p.Ser1170Leu	p.S1170L	ENST00000447079	NM_015083.1	1170	tCa/tTa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974697	21974697	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	183	217	0	ENST00000304494.5:c.130del	p.Tyr44ThrfsTer9	p.Y44Tfs*9	ENST00000304494	NM_000077.4	44	Tac/ac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974697	21974697	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	183	217	0	ENST00000304494.5:c.130del	p.Tyr44ThrfsTer9	p.Y44Tfs*9	ENST00000304494	NM_000077.4	44	Tac/ac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72923732	72923741	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTTCGCTG	CGCTTCGCTG	-			P-0029339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	526	422	0	ENST00000268489.5:c.3337_3346del	p.Gln1113ArgfsTer71	p.Q1113Rfs*71	ENST00000268489	NM_006885.3	1113	CAGCGAAGCGag/ag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	334	449	0	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc																																																																														
APC	0	MSKCC	GRCh37	5	112175906	112175912	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGAGC	TCAGAGC	-			P-0029339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	156	245	0	ENST00000257430.4:c.4615_4621del	p.Glu1540LeufsTer23	p.E1540Lfs*23	ENST00000257430	NM_000038.5	1539	TCAGAGCag/ag																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	48	458	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
TP53	0	MSKCC	GRCh37	17	7578452	7578457	+	missense_variant	Missense_Mutation	ONP	TGGCGC	TGGCGC	CGCGGG			P-0029341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	111	545	0	ENST00000269305.4:c.473_478delinsCCCGCG	p.Arg158_Met160delinsProArgVal	p.R158_M160delinsPRV	ENST00000269305	NM_001126112.2	158	cGCGCCAtg/cCCCGCGtg																																																																														
GATA3	0	MSKCC	GRCh37	10	8111499	8111500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	364	427	0	ENST00000346208.3:c.987dup	p.Arg330GlufsTer22	p.R330Efs*22	ENST00000346208		329	agg/aGgg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30068863	30068866	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGAG	TGAG	-			P-0029353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	109	358	0	ENST00000331968.5:c.2063_2066del	p.Thr688ArgfsTer26	p.T688Rfs*26	ENST00000331968	NM_002742.2	688	aCTCAg/ag																																																																														
SPOP	0	MSKCC	GRCh37	17	47684692	47684692	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	261	366	0	ENST00000347630.2:c.757G>T	p.Glu253Ter	p.E253*	ENST00000347630	NM_001007230.1	253	Gaa/Taa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62311237	62311237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	118	276	1	ENST00000508582.2:c.1145C>T	p.Thr382Met	p.T382M	ENST00000508582		382	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	225	510	2	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11118602	11118602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	73	322	0	ENST00000344626.4:c.2026G>A	p.Ala676Thr	p.A676T	ENST00000344626	NM_003072.3	676	Gca/Aca																																																																														
POLD1	0	MSKCC	GRCh37	19	50912834	50912834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	97	375	0	ENST00000440232.2:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000440232	NM_002691.3	689	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175935	112175935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	31	184	0	ENST00000257430.4:c.4644C>A	p.Asn1548Lys	p.N1548K	ENST00000257430	NM_000038.5	1548	aaC/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0029355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	23	448	1	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
XPO1	0	MSKCC	GRCh37	2	61729435	61729435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	11	249	0	ENST00000401558.2:c.312del	p.Lys104AsnfsTer17	p.K104Nfs*17	ENST00000401558	NM_003400.3	104	aaA/aa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0029355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	11	519	2	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																														
BAP1	0	MSKCC	GRCh37	3	52441252	52441252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	136	438	0	ENST00000460680.1:c.518A>G	p.Tyr173Cys	p.Y173C	ENST00000460680	NM_004656.3	173	tAt/tGt																																																																														
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	65	231	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
IRS1	0	MSKCC	GRCh37	2	227663033	227663033	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	137	394	0	ENST00000305123.5:c.422G>C	p.Gly141Ala	p.G141A	ENST00000305123	NM_005544.2	141	gGc/gCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	45	391	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	46	291	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	31	225	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																														
APC	0	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	32	241	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457388	67457388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	172	487	1	ENST00000327367.4:c.362G>A	p.Cys121Tyr	p.C121Y	ENST00000327367	NM_005902.3	121	tGc/tAc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395647	45395647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	31	416	0	ENST00000262160.6:c.487A>G	p.Asn163Asp	p.N163D	ENST00000262160	NM_005901.5	163	Aac/Gac																																																																														
AURKA	0	MSKCC	GRCh37	20	54958075	54958075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	48	229	0	ENST00000312783.6:c.532C>T	p.Leu178Phe	p.L178F	ENST00000312783	NM_198436.1	178	Ctc/Ttc																																																																														
APC	0	MSKCC	GRCh37	5	112174303	112174303	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	36	253	0	ENST00000257430.4:c.3012del	p.Ala1005ProfsTer17	p.A1005Pfs*17	ENST00000257430	NM_000038.5	1004	ctA/ct																																																																														
RB1	0	MSKCC	GRCh37	13	48939029	48939029	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0029368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	126	206	0	ENST00000267163.4:c.862-1G>A		p.X288_splice	ENST00000267163	NM_000321.2	288																																																																															
TP53	0	MSKCC	GRCh37	17	7578188	7578199	+	inframe_deletion	In_Frame_Del	DEL	CATAGGGCACCA	CATAGGGCACCA	-			P-0029368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	457	575	0	ENST00000269305.4:c.650_661del	p.Val217_Tyr220del	p.V217_Y220del	ENST00000269305	NM_001126112.2	217	gTGGTGCCCTATGag/gag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	203	465	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89448592	89448592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	124	478	2	ENST00000336596.2:c.1556C>T	p.Thr519Met	p.T519M	ENST00000336596	NM_005233.5	519	aCg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	31	312	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	70	360	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																																																														
ATM	0	MSKCC	GRCh37	11	108201082	108201082	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	23	359	0	ENST00000278616.4:c.7449G>A	p.Trp2483Ter	p.W2483*	ENST00000278616	NM_000051.3	2483	tgG/tgA																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478795	56478795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	119	538	0	ENST00000267101.3:c.251C>A	p.Thr84Lys	p.T84K	ENST00000267101	NM_001982.3	84	aCa/aAa																																																																														
TSC2	0	MSKCC	GRCh37	16	2124310	2124310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	269	636	2	ENST00000219476.3:c.2465C>T	p.Ala822Val	p.A822V	ENST00000219476	NM_000548.3	822	gCg/gTg																																																																														
MST1R	0	MSKCC	GRCh37	3	49941020	49941020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	176	497	1	ENST00000296474.3:c.23C>T	p.Pro8Leu	p.P8L	ENST00000296474	NM_002447.2	8	cCt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	129	554	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
CARD11	0	MSKCC	GRCh37	7	2956964	2956964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	76	584	3	ENST00000396946.4:c.2663G>A	p.Arg888His	p.R888H	ENST00000396946	NM_032415.4	888	cGt/cAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	133	418	0	ENST00000371953.3:c.380G>A	p.Gly127Glu	p.G127E	ENST00000371953	NM_000314.4	127	gGa/gAa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81990389	81990389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	121	553	0	ENST00000359376.3:c.3660C>G	p.His1220Gln	p.H1220Q	ENST00000359376	NM_002661.3	1220	caC/caG																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391980	139391980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	172	690	0	ENST00000277541.6:c.6211G>A	p.Glu2071Lys	p.E2071K	ENST00000277541	NM_017617.3	2071	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	175	527	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0029382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	171	361	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0029382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	189	347	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66522006	66522007	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGAAAT			P-0029382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	169	319	1	ENST00000358598.2:c.664_669dup	p.Lys222_Leu223dup	p.K222_L223dup	ENST00000358598	NM_212471.2	222	gtg/gTGAAATtg																																																																														
AMER1	0	MSKCC	GRCh37	X	63410676	63410676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	134	708	0	ENST00000330258.3:c.2491G>T	p.Asp831Tyr	p.D831Y	ENST00000330258	NM_152424.3	831	Gat/Tat																																																																														
SPEN	0	MSKCC	GRCh37	1	16257722	16257722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	164	505	0	ENST00000375759.3:c.4987G>A	p.Val1663Ile	p.V1663I	ENST00000375759	NM_015001.2	1663	Gta/Ata																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056302	27056302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	84	376	0	ENST00000324856.7:c.1298C>T	p.Thr433Ile	p.T433I	ENST00000324856	NM_006015.4	433	aCc/aTc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120480015	120480015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	178	469	1	ENST00000256646.2:c.3412C>T	p.Pro1138Ser	p.P1138S	ENST00000256646	NM_024408.3	1138	Ccc/Tcc																																																																														
PTEN	0	MSKCC	GRCh37	10	89690846	89690847	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	192	333	1	ENST00000371953.3:c.253_253+1delinsAA		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
RPS6KA4	0	MSKCC	GRCh37	11	64129113	64129113	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	350	479	0	ENST00000334205.4:c.652-1G>A		p.X218_splice	ENST00000334205	NM_003942.2	218																																																																															
CBL	0	MSKCC	GRCh37	11	119167632	119167632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	181	375	0	ENST00000264033.4:c.2041C>T	p.Leu681Phe	p.L681F	ENST00000264033	NM_005188.3	681	Ctt/Ttt																																																																														
CDK4	0	MSKCC	GRCh37	12	58143044	58143044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	529	654	0	ENST00000257904.6:c.740G>T	p.Gly247Val	p.G247V	ENST00000257904	NM_000075.3	247	gGa/gTa																																																																														
FLT3	0	MSKCC	GRCh37	13	28636143	28636143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	291	555	1	ENST00000241453.7:c.229G>A	p.Glu77Lys	p.E77K	ENST00000241453	NM_004119.2	77	Gaa/Aaa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907155	32907155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	239	391	2	ENST00000380152.3:c.1540G>A	p.Glu514Lys	p.E514K	ENST00000380152		514	Gag/Aag																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873841	35873841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	126	219	0	ENST00000216797.5:c.10G>A	p.Ala4Thr	p.A4T	ENST00000216797	NM_020529.2	4	Gcg/Acg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857529	9857529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	67	290	0	ENST00000330684.3:c.3872C>T	p.Ser1291Phe	p.S1291F	ENST00000330684	NM_001134407.1	1291	tCc/tTc																																																																														
PALB2	0	MSKCC	GRCh37	16	23647308	23647308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	236	496	0	ENST00000261584.4:c.559C>T	p.Pro187Ser	p.P187S	ENST00000261584	NM_024675.3	187	Cct/Tct																																																																														
CYLD	0	MSKCC	GRCh37	16	50783733	50783734	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	107	625	2	ENST00000398568.2:c.124_125delinsTT	p.Pro42Leu	p.P42L	ENST00000398568	NM_001042412.1	42	CCg/TTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992885	72992885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	117	508	0	ENST00000268489.5:c.1160C>T	p.Pro387Leu	p.P387L	ENST00000268489	NM_006885.3	387	cCc/cTc																																																																														
NF1	0	MSKCC	GRCh37	17	29663770	29663776	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTTCA	TCCTTCA	-			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	90	504	0	ENST00000358273.4:c.6265_6271del	p.Ser2089ThrfsTer20	p.S2089Tfs*20	ENST00000358273	NM_001042492.2	2089	TCCTTCAac/ac																																																																														
RPTOR	0	MSKCC	GRCh37	17	78811757	78811757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	158	526	0	ENST00000306801.3:c.1172C>T	p.Ser391Phe	p.S391F	ENST00000306801	NM_020761.2	391	tCt/tTt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10246810	10246810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	364	612	0	ENST00000340748.4:c.4595C>T	p.Pro1532Leu	p.P1532L	ENST00000340748		1532	cCc/cTc																																																																														
IDH1	0	MSKCC	GRCh37	2	209103954	209103954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	55	347	0	ENST00000345146.2:c.995C>T	p.Ser332Phe	p.S332F	ENST00000345146	NM_005896.2	332	tCc/tTc																																																																														
IRS1	0	MSKCC	GRCh37	2	227663190	227663190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	140	506	0	ENST00000305123.5:c.265C>T	p.Arg89Trp	p.R89W	ENST00000305123	NM_005544.2	89	Cgg/Tgg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023474	31023474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	199	418	0	ENST00000375687.4:c.2959G>A	p.Gly987Arg	p.G987R	ENST00000375687	NM_015338.5	987	Gga/Aga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739007	40739007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	205	463	0	ENST00000373198.4:c.3277C>T	p.Pro1093Ser	p.P1093S	ENST00000373198	NM_133170.3	1093	Ccc/Tcc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100905	41100905	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	70	385	0	ENST00000373198.4:c.1450+1G>A		p.X484_splice	ENST00000373198	NM_133170.3	484																																																																															
PTPRT	0	MSKCC	GRCh37	20	41306506	41306506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	44	269	2	ENST00000373198.4:c.1153G>A	p.Asp385Asn	p.D385N	ENST00000373198	NM_133170.3	385	Gat/Aat																																																																														
PTPRT	0	MSKCC	GRCh37	20	41400190	41400190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	103	400	0	ENST00000373198.4:c.569G>A	p.Arg190Lys	p.R190K	ENST00000373198	NM_133170.3	190	aGa/aAa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46276049	46276049	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	100	555	0	ENST00000371998.3:c.3485C>G	p.Pro1162Arg	p.P1162R	ENST00000371998		1162	cCc/cGc																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185169095	185169095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	69	407	0	ENST00000265026.3:c.1190G>A	p.Arg397Gln	p.R397Q	ENST00000265026	NM_004721.4	397	cGa/cAa																																																																														
TET2	0	MSKCC	GRCh37	4	106156102	106156102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	234	338	1	ENST00000380013.4:c.1003C>T	p.Pro335Ser	p.P335S	ENST00000380013	NM_001127208.2	335	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	571	461	1				ENST00000310581	NM_198253.2																																																																																
MDC1	0	MSKCC	GRCh37	6	30681829	30681829	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	218	579	1	ENST00000376406.3:c.268C>T	p.Arg90Ter	p.R90*	ENST00000376406	NM_014641.2	90	Cga/Tga																																																																														
INHBA	0	MSKCC	GRCh37	7	41729316	41729316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	193	430	0	ENST00000242208.4:c.1213G>A	p.Asp405Asn	p.D405N	ENST00000242208	NM_002192.2	405	Gat/Aat																																																																														
EGFR	0	MSKCC	GRCh37	7	55268921	55268921	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	210	702	0	ENST00000275493.2:c.2987A>G	p.Asn996Ser	p.N996S	ENST00000275493	NM_005228.3	996	aAc/aGc																																																																														
EZH2	0	MSKCC	GRCh37	7	148524340	148524340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	215	352	0	ENST00000320356.2:c.644C>T	p.Pro215Leu	p.P215L	ENST00000320356	NM_004456.4	215	cCt/cTt																																																																														
FGFR1	0	MSKCC	GRCh37	8	38271147	38271148	+	stop_lost	Nonstop_Mutation	DNP	CA	CA	AG			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	358	426	0	ENST00000425967.3:c.2560_2561delinsCT	p.Ter854LeuextTer105	p.*854Lext*105	ENST00000425967	NM_001174067.1	854	TGa/CTa																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101895007	101895007	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	50	207	0	ENST00000374994.4:c.560C>A	p.Ser187Ter	p.S187*	ENST00000374994	NM_004612.2	187	tCa/tAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	118	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	375	611	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49439958	49439958	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0029393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	375	569	1	ENST00000301067.7:c.4584-1G>A		p.X1528_splice	ENST00000301067	NM_003482.3	1528																																																																															
BRCA1	0	MSKCC	GRCh37	17	41228566	41228566	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	344	665	0	ENST00000357654.3:c.4423del	p.Asp1475ThrfsTer30	p.D1475Tfs*30	ENST00000357654	NM_007294.3	1475	Gac/ac																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18280066	18280084	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCCCCGGGCCCCGGCC	CGCGCCCCGGGCCCCGGCC	-			P-0029393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	73	169	0	ENST00000222254.8:c.2152_2170del	p.Ala718ArgfsTer150	p.A718Rfs*150	ENST00000222254	NM_005027.3	717	CGCGCCCCGGGCCCCGGCCcg/cg																																																																														
APC	0	MSKCC	GRCh37	5	112173791	112173791	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	119	360	0	ENST00000257430.4:c.2500T>A	p.Ser834Thr	p.S834T	ENST00000257430	NM_000038.5	834	Tcc/Acc																																																																														
FLT4	0	MSKCC	GRCh37	5	180055910	180055910	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	176	659	0	ENST00000261937.6:c.1075G>C	p.Ala359Pro	p.A359P	ENST00000261937	NM_182925.4	359	Gca/Cca																																																																														
SOX17	0	MSKCC	GRCh37	8	55370717	55370717	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	100	545	1	ENST00000297316.4:c.19G>T	p.Gly7Ter	p.G7*	ENST00000297316	NM_022454.3	7	Gga/Tga																																																																														
IRS2	0	MSKCC	GRCh37	13	110438153	110438153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	159	321	0	ENST00000375856.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000375856	NM_003749.2	83	cGg/cAg																																																																														
TET1	0	MSKCC	GRCh37	10	70332436	70332436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	244	520	1	ENST00000373644.4:c.341G>A	p.Arg114Gln	p.R114Q	ENST00000373644	NM_030625.2	114	cGa/cAa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778894	3778894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	152	456	0	ENST00000262367.5:c.6154C>T	p.Arg2052Trp	p.R2052W	ENST00000262367	NM_004380.2	2052	Cgg/Tgg																																																																														
MAX	0	MSKCC	GRCh37	14	65560486	65560486	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	79	391	0	ENST00000358664.4:c.111C>G	p.Asp37Glu	p.D37E	ENST00000358664	NM_002382.4	37	gaC/gaG																																																																														
TP53	0	MSKCC	GRCh37	17	7578283	7578283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	178	500	0	ENST00000269305.4:c.566C>A	p.Ala189Asp	p.A189D	ENST00000269305	NM_001126112.2	189	gCc/gAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575175	48575175	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	50	280	0	ENST00000342988.3:c.369T>A	p.Cys123Ter	p.C123*	ENST00000342988	NM_005359.5	123	tgT/tgA																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323193	31323193	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	33	536	0	ENST00000412585.2:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000412585	NM_005514.6	266	Cag/Tag																																																																														
AR	0	MSKCC	GRCh37	X	66765070	66765070	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	48	623	2	ENST00000374690.3:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000374690	NM_000044.3	28	Cag/Tag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0029395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	254	689	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
IDH1	0	MSKCC	GRCh37	2	209113361	209113361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	134	307	0	ENST00000345146.2:c.146G>A	p.Arg49His	p.R49H	ENST00000345146	NM_005896.2	49	cGt/cAt																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20156734	20156734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	188	428	0	ENST00000379607.5:c.23G>A	p.Gly8Glu	p.G8E	ENST00000379607	NM_001412.3	8	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	152	368	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	36	265	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga																																																																														
MED12	0	MSKCC	GRCh37	X	70338645	70338645	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	149	299	0	ENST00000374080.3:c.41T>C	p.Leu14Pro	p.L14P	ENST00000374080		14	cTg/cCg																																																																														
MED12	0	MSKCC	GRCh37	X	70339327	70339327	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	42	191	0	ENST00000374080.3:c.204G>C	p.Lys68Asn	p.K68N	ENST00000374080		68	aaG/aaC																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138413742	138413742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	134	276	1	ENST00000289153.2:c.1778C>T	p.Ala593Val	p.A593V	ENST00000289153	NM_006219.2	593	gCg/gTg																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798111	45798111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	51	516	0	ENST00000372115.3:c.698G>T	p.Arg233Leu	p.R233L	ENST00000372115	NM_001048171.1	233	cGa/cTa																																																																														
IL10	0	MSKCC	GRCh37	1	206942060	206942060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	79	295	0	ENST00000423557.1:c.458G>A	p.Gly153Asp	p.G153D	ENST00000423557	NM_000572.2	153	gGc/gAc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18793385	18793385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	69	382	0	ENST00000266497.5:c.4082C>T	p.Pro1361Leu	p.P1361L	ENST00000266497		1361	cCc/cTc																																																																														
FLT4	0	MSKCC	GRCh37	5	180047907	180047907	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	461	633	1	ENST00000261937.6:c.2268C>A	p.Cys756Ter	p.C756*	ENST00000261937	NM_182925.4	756	tgC/tgA																																																																														
ERCC3	0	MSKCC	GRCh37	2	128017009	128017009	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151216904		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	50	498	1	ENST00000285398.2:c.2080G>A	p.Ala694Thr	p.A694T	ENST00000285398	NM_000122.1	694	Gct/Act																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	36	321	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	161	335	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
PTEN	0	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	47	339	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-																																																																														
RNF43	0	MSKCC	GRCh37	17	56436127	56436127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138844366		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	218	545	0	ENST00000407977.2:c.1010G>A	p.Arg337Gln	p.R337Q	ENST00000407977		337	cGa/cAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	192	565	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
MLH1	0	MSKCC	GRCh37	3	37058999	37058999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	135	379	2	ENST00000231790.2:c.793C>T	p.Arg265Cys	p.R265C	ENST00000231790	NM_000249.3	265	Cgt/Tgt																																																																														
TET1	0	MSKCC	GRCh37	10	70441157	70441157	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	48	372	0	ENST00000373644.4:c.4832delA	p.Asn1611ThrfsTer13	p.N1611Tfs*13	ENST00000373644	NM_030625.2	1609	gAa/ga																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	80	241	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	185	474	1	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	204	304	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
NF1	0	MSKCC	GRCh37	17	29552152	29552152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	87	221	0	ENST00000358273.4:c.1885G>A	p.Gly629Arg	p.G629R	ENST00000358273	NM_001042492.2	629	Ggg/Agg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	224	633	5	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
SPEN	0	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	49	389	2	ENST00000375759.3:c.3154delA	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822563	72822564	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	95	401	0	ENST00000268489.5:c.9609_9611dupGCA	p.Gln3204dup	p.Q3204dup	ENST00000268489	NM_006885.3	3204	caa/caGCAa																																																																														
SOX9	0	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	36	87	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	172	438	2	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																														
CEBPA	0	MSKCC	GRCh37	19	33793252	33793253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	22	124	0	ENST00000498907.2:c.68dupC	p.His24AlafsTer84	p.H24Afs*84	ENST00000498907	NM_004364.3	23	ccg/ccCg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	103	518	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856623	111856623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	57	141	0	ENST00000341259.2:c.674G>A	p.Arg225His	p.R225H	ENST00000341259	NM_005475.2	225	cGc/cAc																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957464	175957465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	129	377	1	ENST00000367669.3:c.1931dup	p.Asn644LysfsTer17	p.N644Kfs*17	ENST00000367669	NM_022457.5	644	aac/aaAc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64132907	64132907	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	67	577	2	ENST00000334205.4:c.1046delC	p.Pro349HisfsTer26	p.P349Hfs*26	ENST00000334205	NM_003942.2	347	agC/ag																																																																														
KDM5A	0	MSKCC	GRCh37	12	416900	416900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	92	348	0	ENST00000399788.2:c.3650G>A	p.Arg1217Gln	p.R1217Q	ENST00000399788	NM_001042603.1	1217	cGg/cAg																																																																														
SLX4	84464	MSKCC	GRCh37	16	3640853	3640853	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117707719		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	205	654	0	ENST00000294008.3:c.2786C>T	p.Pro929Leu	p.P929L	ENST00000294008	NM_032444.2	929	cCg/cTg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264348	46264348	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	32	344	0	ENST00000371998.3:c.1400delC	p.Pro467HisfsTer15	p.P467Hfs*15	ENST00000371998		465	agC/ag																																																																														
NF1	0	MSKCC	GRCh37	17	29683558	29683558	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	166	420	2	ENST00000358273.4:c.7701del	p.Met2569Ter	p.M2569*	ENST00000358273	NM_001042492.2	2566	Ccc/cc																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225731	26225731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	203	486	0	ENST00000360408.1:c.349C>T	p.Arg117Cys	p.R117C	ENST00000360408	NM_003532.2	117	Cgc/Tgc																																																																														
APC	0	MSKCC	GRCh37	5	112173955	112173956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	115	276	0	ENST00000257430.4:c.2667dup	p.Val890SerfsTer22	p.V890Sfs*22	ENST00000257430	NM_000038.5	888	-/A																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	292	873	1	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71021818	71021818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	63	140	0	ENST00000318789.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000318789	NM_032682.5	514	Cgt/Tgt																																																																														
SOX9	0	MSKCC	GRCh37	17	70119769	70119769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	204	552	0	ENST00000245479.2:c.774del	p.Leu259CysfsTer20	p.L259Cfs*20	ENST00000245479	NM_000346.3	257	cgC/cg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273026	18273026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	169	672	2	ENST00000222254.8:c.921delC	p.Lys308ArgfsTer33	p.K308Rfs*33	ENST00000222254	NM_005027.3	306	Ccc/cc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440542	49440542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	270	678	3	ENST00000301067.7:c.4268G>A	p.Arg1423His	p.R1423H	ENST00000301067	NM_003482.3	1423	cGt/cAt																																																																														
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	192	531	7	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																														
EZH1	0	MSKCC	GRCh37	17	40864479	40864479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	228	600	0	ENST00000428826.2:c.1229C>T	p.Pro410Leu	p.P410L	ENST00000428826		410	cCc/cTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211883	36211883	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202218975		P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	310	843	2	ENST00000222270.7:c.1634G>A	p.Arg545Gln	p.R545Q	ENST00000222270	NM_014727.1	545	cGa/cAa																																																																														
BAP1	0	MSKCC	GRCh37	3	52438586	52438586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	100	337	4	ENST00000460680.1:c.1133C>T	p.Ala378Val	p.A378V	ENST00000460680	NM_004656.3	378	gCg/gTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16254933	16254933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	157	399	4	ENST00000375759.3:c.2198G>A	p.Arg733His	p.R733H	ENST00000375759	NM_015001.2	733	cGt/cAt																																																																														
SPEN	0	MSKCC	GRCh37	1	16263810	16263810	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	67	497	0	ENST00000375759.3:c.10182del	p.Thr3395ProfsTer5	p.T3395Pfs*5	ENST00000375759	NM_015001.2	3393	aaG/aa																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937950	36937950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	194	690	2	ENST00000361632.4:c.886G>A	p.Gly296Arg	p.G296R	ENST00000361632		296	Ggg/Agg																																																																														
ATM	0	MSKCC	GRCh37	11	108203511	108203511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	81	257	0	ENST00000278616.4:c.7811G>T	p.Arg2604Ile	p.R2604I	ENST00000278616	NM_000051.3	2604	aGa/aTa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344821	118344821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	93	302	0	ENST00000534358.1:c.2947C>A	p.Leu983Met	p.L983M	ENST00000534358	NM_005933.3	983	Ctg/Atg																																																																														
GLI1	0	MSKCC	GRCh37	12	57864745	57864745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	152	601	0	ENST00000228682.2:c.2222A>G	p.Glu741Gly	p.E741G	ENST00000228682	NM_005269.2	741	gAg/gGg																																																																														
TSHR	0	MSKCC	GRCh37	14	81609880	81609880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	91	252	0	ENST00000298171.2:c.1478G>A	p.Gly493Glu	p.G493E	ENST00000298171	NM_000369.2	493	gGg/gAg																																																																														
TSHR	0	MSKCC	GRCh37	14	81610452	81610452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	116	291	0	ENST00000298171.2:c.2050G>A	p.Ala684Thr	p.A684T	ENST00000298171	NM_000369.2	684	Gcc/Acc																																																																														
B2M	0	MSKCC	GRCh37	15	45003773	45003773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	301	356	1	ENST00000558401.1:c.29T>C	p.Leu10Pro	p.L10P	ENST00000558401	NM_004048.2	10	cTc/cCc																																																																														
SLX4	0	MSKCC	GRCh37	16	3632597	3632597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	236	650	0	ENST00000294008.3:c.5251G>A	p.Asp1751Asn	p.D1751N	ENST00000294008	NM_032444.2	1751	Gac/Aac																																																																														
ERCC4	0	MSKCC	GRCh37	16	14021985	14021985	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	79	494	0	ENST00000311895.7:c.685A>G	p.Ile229Val	p.I229V	ENST00000311895	NM_005236.2	229	Ata/Gta																																																																														
NUP93	0	MSKCC	GRCh37	16	56782248	56782248	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	162	397	0	ENST00000308159.5:c.89A>G	p.Glu30Gly	p.E30G	ENST00000308159	NM_014669.4	30	gAa/gGa																																																																														
EZH1	0	MSKCC	GRCh37	17	40870594	40870594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	62	583	0	ENST00000428826.2:c.809C>A	p.Pro270His	p.P270H	ENST00000428826		270	cCc/cAc																																																																														
RNF43	0	MSKCC	GRCh37	17	56436008	56436008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	29	290	0	ENST00000407977.2:c.1129C>A	p.Pro377Thr	p.P377T	ENST00000407977		377	Cca/Aca																																																																														
RPTOR	0	MSKCC	GRCh37	17	78599504	78599504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	187	349	0	ENST00000306801.3:c.176G>A	p.Ser59Asn	p.S59N	ENST00000306801	NM_020761.2	59	aGt/aAt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610211	10610211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	265	643	0	ENST00000171111.5:c.499G>A	p.Val167Ile	p.V167I	ENST00000171111	NM_203500.1	167	Gtt/Att																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152064	11152064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	207	457	0	ENST00000344626.4:c.4252G>A	p.Asp1418Asn	p.D1418N	ENST00000344626	NM_003072.3	1418	Gac/Aac																																																																														
JAK3	0	MSKCC	GRCh37	19	17945448	17945448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	70	559	0	ENST00000458235.1:c.2282C>T	p.Ala761Val	p.A761V	ENST00000458235	NM_000215.3	761	gCc/gTc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25523021	25523021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	162	562	0	ENST00000264709.3:c.164G>A	p.Arg55His	p.R55H	ENST00000264709	NM_175629.2	55	cGc/cAc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46608817	46608817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	177	630	0	ENST00000263734.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000263734	NM_001430.4	710	Cga/Tga																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022247	31022247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	105	273	0	ENST00000375687.4:c.1732C>T	p.Arg578Cys	p.R578C	ENST00000375687	NM_015338.5	578	Cgt/Tgt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022680	31022680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	142	592	0	ENST00000375687.4:c.2165C>A	p.Pro722His	p.P722H	ENST00000375687	NM_015338.5	722	cCt/cAt																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31368253	31368253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	59	510	1	ENST00000328111.2:c.124C>A	p.Arg42Ser	p.R42S	ENST00000328111	NM_006892.3	42	Cgc/Agc																																																																														
SRC	0	MSKCC	GRCh37	20	36031586	36031586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	166	489	2	ENST00000358208.4:c.1415G>A	p.Arg472His	p.R472H	ENST00000358208		472	cGc/cAc																																																																														
VHL	0	MSKCC	GRCh37	3	10188272	10188272	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	194	556	0	ENST00000256474.2:c.415T>C	p.Ser139Pro	p.S139P	ENST00000256474	NM_000551.3	139	Tct/Cct																																																																														
TET2	0	MSKCC	GRCh37	4	106156562	106156562	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	117	319	0	ENST00000380013.4:c.1463A>G	p.Asn488Ser	p.N488S	ENST00000380013	NM_001127208.2	488	aAt/aGt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526618	31526618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	150	501	0	ENST00000344624.3:c.422C>T	p.Thr141Ile	p.T141I	ENST00000344624		141	aCt/aTt																																																																														
APC	0	MSKCC	GRCh37	5	112177922	112177922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	49	330	0	ENST00000257430.4:c.6631G>T	p.Gly2211Cys	p.G2211C	ENST00000257430	NM_000038.5	2211	Ggc/Tgc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520479	176520479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	278	660	1	ENST00000292408.4:c.1324G>A	p.Gly442Ser	p.G442S	ENST00000292408	NM_213647.1	442	Ggc/Agc																																																																														
FLT4	0	MSKCC	GRCh37	5	180048157	180048157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	69	598	2	ENST00000261937.6:c.2116G>A	p.Ala706Thr	p.A706T	ENST00000261937	NM_182925.4	706	Gcg/Acg																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778214	27778214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	148	528	0	ENST00000369163.2:c.363G>T	p.Met121Ile	p.M121I	ENST00000369163	NM_003536.2	121	atG/atT																																																																														
DAXX	0	MSKCC	GRCh37	6	33289112	33289112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	58	566	0	ENST00000374542.5:c.440del	p.Pro147LeufsTer82	p.P147Lfs*82	ENST00000374542	NM_001141970.1	147	cCt/ct																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200459	138200460	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	46	423	0	ENST00000237289.4:c.1880_1881delGT	p.Cys627PhefsTer44	p.C627Ffs*44	ENST00000237289	NM_001270507.1	626	cTG/c																																																																														
SOX17	0	MSKCC	GRCh37	8	55370942	55370942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	209	615	2	ENST00000297316.4:c.244G>A	p.Glu82Lys	p.E82K	ENST00000297316	NM_022454.3	82	Gag/Aag																																																																														
ABL1	0	MSKCC	GRCh37	9	133760004	133760004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	85	740	0	ENST00000318560.5:c.2329del	p.Arg777GlufsTer4	p.R777Efs*4	ENST00000318560	NM_005157.4	776	aCc/ac																																																																														
TSC1	0	MSKCC	GRCh37	9	135771794	135771794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	241	546	1	ENST00000298552.3:c.3323G>A	p.Gly1108Asp	p.G1108D	ENST00000298552	NM_001162426.1	1108	gGc/gAc																																																																														
RXRA	0	MSKCC	GRCh37	9	137300005	137300005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	96	547	1	ENST00000481739.1:c.290C>A	p.Pro97His	p.P97H	ENST00000481739	NM_002957.4	97	cCt/cAt																																																																														
SDHA	0	MSKCC	GRCh37	5	231112	231112	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	37	245	0	ENST00000264932.6:c.892A>G	p.Thr298Ala	p.T298A	ENST00000264932	NM_004168.2	298	Aca/Gca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	130	457	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	173	656	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	145	393	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	173	440	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	453	629	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CASP8	0	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	168	500	0	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	267	663	3	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	135	388	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	213	643	10	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	209	648	4	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
CSF3R	0	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	221	692	10	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
B2M	0	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	80	222	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
CASP8	0	MSKCC	GRCh37	2	202141632	202141632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	196	535	0	ENST00000358485.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000358485	NM_001080125.1	307	cGg/cAg																																																																														
MST1	0	MSKCC	GRCh37	3	49723126	49723128	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	238	585	0	ENST00000449682.2:c.1288_1290delGAG	p.Glu430del	p.E430del	ENST00000449682	NM_020998.3	430	GAG/-																																																																														
GNAQ	0	MSKCC	GRCh37	9	80336294	80336294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	141	369	0	ENST00000286548.4:c.1025C>T	p.Ala342Val	p.A342V	ENST00000286548	NM_002072.3	342	gCt/gTt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778455	3778455	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	354	776	1	ENST00000262367.5:c.6593T>A	p.Leu2198Gln	p.L2198Q	ENST00000262367	NM_004380.2	2198	cTg/cAg																																																																														
CDK12	0	MSKCC	GRCh37	17	37676268	37676268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	240	708	0	ENST00000447079.4:c.3023G>A	p.Arg1008Gln	p.R1008Q	ENST00000447079	NM_015083.1	1008	cGg/cAg																																																																														
MTOR	0	MSKCC	GRCh37	1	11319442	11319442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	72	495	1	ENST00000361445.4:c.25G>A	p.Ala9Thr	p.A9T	ENST00000361445	NM_004958.3	9	Gcc/Acc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157405806	157405806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	101	304	0	ENST00000346085.5:c.2048G>A	p.Gly683Asp	p.G683D	ENST00000346085	NM_020732.3	683	gGc/gAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	536	698	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
GLI1	0	MSKCC	GRCh37	12	57859006	57859006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	277	685	0	ENST00000228682.2:c.502C>T	p.Pro168Ser	p.P168S	ENST00000228682	NM_005269.2	168	Cct/Tct																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	278	874	7	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986865	36986865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	118	175	0	ENST00000354822.5:c.824C>T	p.Pro275Leu	p.P275L	ENST00000354822	NM_001079668.2	275	cCg/cTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5231345	5231345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	203	610	3	ENST00000357368.4:c.2131G>A	p.Val711Met	p.V711M	ENST00000357368	NM_002850.3	711	Gtg/Atg																																																																														
IRF4	0	MSKCC	GRCh37	6	401492	401492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	134	311	0	ENST00000380956.4:c.814G>A	p.Glu272Lys	p.E272K	ENST00000380956	NM_001195286.1	272	Gag/Aag																																																																														
MTOR	0	MSKCC	GRCh37	1	11190752	11190754	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	231	593	0	ENST00000361445.4:c.5445_5447del	p.Lys1816del	p.K1816del	ENST00000361445	NM_004958.3	1815	aaGAAa/aaa																																																																														
SPEN	0	MSKCC	GRCh37	1	16248819	16248819	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	51	535	0	ENST00000375759.3:c.1828del	p.Tyr610MetfsTer4	p.Y610Mfs*4	ENST00000375759	NM_015001.2	609	Ttt/tt																																																																														
MUTYH	0	MSKCC	GRCh37	1	45795027	45795027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	254	552	0	ENST00000372115.3:c.1559G>T	p.Arg520Leu	p.R520L	ENST00000372115	NM_001048171.1	520	cGg/cTg																																																																														
MUTYH	0	MSKCC	GRCh37	1	45797856	45797856	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	208	545	0	ENST00000372115.3:c.873del	p.Cys292AlafsTer13	p.C292Afs*13	ENST00000372115	NM_001048171.1	291	ctG/ct																																																																														
JUN	0	MSKCC	GRCh37	1	59247929	59247929	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	266	708	7	ENST00000371222.2:c.814del	p.Arg272GlyfsTer13	p.R272Gfs*13	ENST00000371222	NM_002228.3	272	Agg/gg																																																																														
MDM4	0	MSKCC	GRCh37	1	204512038	204512038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	31	385	1	ENST00000367182.3:c.638G>T	p.Arg213Ile	p.R213I	ENST00000367182	NM_001278516.1	213	aGa/aTa																																																																														
SUFU	0	MSKCC	GRCh37	10	104263914	104263914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	25	69	0	ENST00000369902.3:c.5C>T	p.Ala2Val	p.A2V	ENST00000369902	NM_016169.3	2	gCg/gTg																																																																														
PGR	0	MSKCC	GRCh37	11	100999297	100999297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	243	794	1	ENST00000325455.5:c.505G>A	p.Gly169Arg	p.G169R	ENST00000325455	NM_001202474.3	169	Ggg/Agg																																																																														
RECQL	0	MSKCC	GRCh37	12	21643235	21643235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	72	722	1	ENST00000421138.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000421138		98	Gaa/Aaa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445166	49445166	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	317	821	0	ENST00000301067.7:c.2300A>T	p.Glu767Val	p.E767V	ENST00000301067	NM_003482.3	767	gAg/gTg																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988192	36988192	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	54	461	0	ENST00000354822.5:c.461C>A	p.Ala154Asp	p.A154D	ENST00000354822	NM_001079668.2	154	gCc/gAc																																																																														
B2M	0	MSKCC	GRCh37	15	45007645	45007645	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	102	283	0	ENST00000558401.1:c.92del	p.Ser31TyrfsTer13	p.S31Yfs*13	ENST00000558401	NM_004048.2	31	tCa/ta																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678514	88678514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	148	372	0	ENST00000360948.2:c.1022C>A	p.Pro341His	p.P341H	ENST00000360948	NM_001012338.2	341	cCt/cAt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10249237	10249239	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	175	564	0	ENST00000340748.4:c.3943_3945del	p.Ile1315del	p.I1315del	ENST00000340748		1315	ATC/-																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288780	15288780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	64	109	0	ENST00000263388.2:c.3959C>T	p.Ser1320Leu	p.S1320L	ENST00000263388	NM_000435.2	1320	tCg/tTg																																																																														
JAK3	0	MSKCC	GRCh37	19	17952246	17952246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	244	671	1	ENST00000458235.1:c.1094C>T	p.Pro365Leu	p.P365L	ENST00000458235	NM_000215.3	365	cCg/cTg																																																																														
MEF2B	0	MSKCC	GRCh37	19	19260136	19260136	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142232568		P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	280	741	0	ENST00000162023.5:c.157C>T	p.Arg53Cys	p.R53C	ENST00000162023		53	Cgc/Tgc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213588	36213589	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	331	934	0	ENST00000222270.7:c.2693_2694del	p.Leu898ProfsTer18	p.L898Pfs*18	ENST00000222270	NM_014727.1	897	cCT/c																																																																														
POLD1	0	MSKCC	GRCh37	19	50919073	50919073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	190	667	0	ENST00000440232.2:c.2810T>C	p.Met937Thr	p.M937T	ENST00000440232	NM_002691.3	937	aTg/aCg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25457216	25457216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	191	632	2	ENST00000264709.3:c.2671C>T	p.Arg891Trp	p.R891W	ENST00000264709	NM_175629.2	891	Cgg/Tgg																																																																														
SOS1	0	MSKCC	GRCh37	2	39283898	39283898	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	190	570	1	ENST00000402219.2:c.455T>A	p.Ile152Lys	p.I152K	ENST00000402219	NM_005633.3	152	aTa/aAa																																																																														
RAF1	0	MSKCC	GRCh37	3	12627293	12627293	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	140	375	0	ENST00000251849.4:c.1423T>G	p.Phe475Val	p.F475V	ENST00000251849	NM_002880.3	475	Ttt/Gtt																																																																														
MLH1	0	MSKCC	GRCh37	3	37038129	37038129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	114	278	0	ENST00000231790.2:c.136A>G	p.Ser46Gly	p.S46G	ENST00000231790	NM_000249.3	46	Agt/Ggt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71096155	71096155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	122	356	0	ENST00000318789.4:c.602G>A	p.Arg201His	p.R201H	ENST00000318789	NM_032682.5	201	cGc/cAc																																																																														
PRKCI	0	MSKCC	GRCh37	3	169998164	169998165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	260	711	0	ENST00000295797.4:c.861dup	p.Glu288ArgfsTer4	p.E288Rfs*4	ENST00000295797	NM_002740.5	285	-/A																																																																														
KIT	0	MSKCC	GRCh37	4	55575693	55575693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	140	406	0	ENST00000288135.5:c.1219G>T	p.Val407Phe	p.V407F	ENST00000288135	NM_000222.2	407	Gtt/Ttt																																																																														
SDHA	0	MSKCC	GRCh37	5	231111	231111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	193	279	0	ENST00000264932.6:c.891del	p.Thr298GlnfsTer50	p.T298Qfs*50	ENST00000264932	NM_004168.2	297	ccT/cc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177585	56177585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	152	364	1	ENST00000399503.3:c.2558G>A	p.Arg853His	p.R853H	ENST00000399503	NM_005921.1	853	cGt/cAt																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149497231	149497231	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	219	631	0	ENST00000261799.4:c.3087A>C	p.Lys1029Asn	p.K1029N	ENST00000261799	NM_002609.3	1029	aaA/aaC																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32180948	32180948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	166	609	1	ENST00000375023.3:c.2402G>A	p.Arg801His	p.R801H	ENST00000375023	NM_004557.3	801	cGc/cAc																																																																														
TAP1	0	MSKCC	GRCh37	6	32821146	32821146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	275	820	0	ENST00000354258.4:c.448C>A	p.Gln150Lys	p.Q150K	ENST00000354258	NM_000593.5	150	Cag/Aag																																																																														
FGFR1	0	MSKCC	GRCh37	8	38272418	38272418	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	109	370	0	ENST00000425967.3:c.1949G>C	p.Cys650Ser	p.C650S	ENST00000425967	NM_001174067.1	650	tGc/tCc																																																																														
LYN	0	MSKCC	GRCh37	8	56879436	56879436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	225	581	0	ENST00000519728.1:c.953T>C	p.Ile318Thr	p.I318T	ENST00000519728	NM_002350.3	318	aTc/aCc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981921	70981921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	480	718	2	ENST00000276594.2:c.175G>A	p.Ala59Thr	p.A59T	ENST00000276594	NM_024504.3	59	Gca/Aca																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128322000	128322000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	244	732	0	ENST00000265960.3:c.760A>G	p.Ile254Val	p.I254V	ENST00000265960	NM_001006617.1	254	Att/Gtt																																																																														
BCOR	0	MSKCC	GRCh37	X	39932321	39932321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	331	870	1	ENST00000378444.4:c.2278C>A	p.Leu760Ile	p.L760I	ENST00000378444	NM_001123385.1	760	Ctc/Atc																																																																														
ARAF	0	MSKCC	GRCh37	X	47428208	47428208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	89	631	0	ENST00000377045.4:c.1168C>A	p.Leu390Ile	p.L390I	ENST00000377045	NM_001654.4	390	Ctc/Atc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226130	53226130	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	167	585	0	ENST00000375401.3:c.2719del	p.Arg907GlyfsTer28	p.R907Gfs*28	ENST00000375401	NM_004187.3	907	Agg/gg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53230751	53230751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	245	633	3	ENST00000375401.3:c.2042G>A	p.Arg681Gln	p.R681Q	ENST00000375401	NM_004187.3	681	cGa/cAa																																																																														
AR	0	MSKCC	GRCh37	X	66941783	66941783	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	58	516	0	ENST00000374690.3:c.2427A>C	p.Lys809Asn	p.K809N	ENST00000374690	NM_000044.3	809	aaA/aaC																																																																														
ATRX	0	MSKCC	GRCh37	X	76939832	76939832	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	187	459	0	ENST00000373344.5:c.916A>T	p.Asn306Tyr	p.N306Y	ENST00000373344	NM_000489.3	306	Aat/Tat																																																																														
ATRX	0	MSKCC	GRCh37	X	76939999	76939999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	186	621	1	ENST00000373344.5:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000373344	NM_000489.3	250	cGa/cAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	125	532	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36941195	36941196	+	missense_variant	Missense_Mutation	DNP	GA	GA	CC			P-0029402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	62	545	1	ENST00000361632.4:c.143_144delinsGG	p.Ile48Arg	p.I48R	ENST00000361632		48	aTC/aGG																																																																														
CSF3R	0	MSKCC	GRCh37	1	36941205	36941205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	64	573	0	ENST00000361632.4:c.134C>T	p.Ser45Phe	p.S45F	ENST00000361632		45	tCc/tTc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36941230	36941230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	62	579	0	ENST00000361632.4:c.109C>T	p.His37Tyr	p.H37Y	ENST00000361632		37	Cac/Tac																																																																														
IGF1R	0	MSKCC	GRCh37	15	99486176	99486176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	44	413	1	ENST00000268035.6:c.3482A>G	p.Tyr1161Cys	p.Y1161C	ENST00000268035	NM_000875.3	1161	tAt/tGt																																																																														
RXRA	0	MSKCC	GRCh37	9	137325974	137325974	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	96	662	2	ENST00000481739.1:c.1162G>T	p.Glu388Ter	p.E388*	ENST00000481739	NM_002957.4	388	Gag/Tag																																																																														
RYBP	0	MSKCC	GRCh37	3	72495657	72495657	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	104	243	0	ENST00000477973.2:c.413A>G	p.Thr139Ala	p.T139A	ENST00000477973	NM_012234.5	139	Acc/Gcc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720805	89720806	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	52	268	0	ENST00000371953.3:c.959dupT	p.Leu320PhefsTer5	p.L320Ffs*5	ENST00000371953	NM_000314.4	319	act/acTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	122	549	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	78	389	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016628	12016628	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	71	383	0	ENST00000353533.5:c.764T>C	p.Val255Ala	p.V255A	ENST00000353533	NM_003010.3	255	gTg/gCg																																																																														
POLD1	0	MSKCC	GRCh37	19	50905602	50905602	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	107	708	0	ENST00000440232.2:c.730T>G	p.Tyr244Asp	p.Y244D	ENST00000440232	NM_002691.3	244	Tac/Gac																																																																														
AMER1	0	MSKCC	GRCh37	X	63410489	63410489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	96	649	1	ENST00000330258.3:c.2678G>T	p.Ser893Ile	p.S893I	ENST00000330258	NM_152424.3	893	aGc/aTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0029410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	66	363	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	103	549	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	56	409	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KLF4	0	MSKCC	GRCh37	9	110248150	110248150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	74	344	0	ENST00000374672.4:c.1322A>G	p.Asp441Gly	p.D441G	ENST00000374672	NM_004235.4	441	gAt/gGt																																																																														
APC	0	MSKCC	GRCh37	5	112173346	112173346	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	44	266	0	ENST00000257430.4:c.2055G>A	p.Trp685Ter	p.W685*	ENST00000257430	NM_000038.5	685	tgG/tgA																																																																														
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	20	592	0	ENST00000356142.4:c.85C>A	p.Pro29Thr	p.P29T	ENST00000356142	NM_018890.3	29	Cct/Act																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31379479	31379479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145632647		P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	80	472	2	ENST00000328111.2:c.886G>A	p.Val296Ile	p.V296I	ENST00000328111	NM_006892.3	296	Gtc/Atc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	217	526	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	217	448	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	104	268	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	137	317	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
SETD2	0	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	53	484	1	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	47	380	0	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	92	532	1	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	226	415	6	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	141	379	4	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806181	1806181	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	302	656	1	ENST00000260795.2:c.1206delC	p.Lys403ArgfsTer29	p.K403Rfs*29	ENST00000260795		400	agC/ag																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121266	29121266	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	203	568	0	ENST00000328354.6:c.409C>T	p.Arg137Ter	p.R137*	ENST00000328354	NM_007194.3	137	Cga/Tga																																																																														
BTK	0	MSKCC	GRCh37	X	100611131	100611131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	234	558	1	ENST00000308731.7:c.1475G>A	p.Arg492His	p.R492H	ENST00000308731	NM_000061.2	492	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	62	553	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
POLD1	0	MSKCC	GRCh37	19	50912075	50912077	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	267	635	1	ENST00000440232.2:c.1812_1814del	p.Ser605del	p.S605del	ENST00000440232	NM_002691.3	603	ttCTCc/ttc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	89	540	0	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
TSC2	0	MSKCC	GRCh37	16	2135247	2135247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	147	616	0	ENST00000219476.3:c.4586G>A	p.Arg1529Gln	p.R1529Q	ENST00000219476	NM_000548.3	1529	cGg/cAg																																																																														
CCND1	0	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	273	650	0	ENST00000227507.2:c.859C>A	p.Pro287Thr	p.P287T	ENST00000227507	NM_053056.2	287	Ccc/Acc																																																																														
AXL	0	MSKCC	GRCh37	19	41726567	41726567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	243	528	0	ENST00000301178.4:c.112G>A	p.Val38Met	p.V38M	ENST00000301178	NM_021913.4	38	Gtg/Atg																																																																														
AR	0	MSKCC	GRCh37	X	66766198	66766198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	144	321	0	ENST00000374690.3:c.1210G>A	p.Ala404Thr	p.A404T	ENST00000374690	NM_000044.3	404	Gcg/Acg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092758	27092758	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	199	469	2	ENST00000324856.7:c.2780del	p.Gly927AspfsTer14	p.G927Dfs*14	ENST00000324856	NM_006015.4	927	Gga/ga																																																																														
GATA3	0	MSKCC	GRCh37	10	8100452	8100452	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	175	569	1	ENST00000346208.3:c.431delG	p.Gly144AlafsTer51	p.G144Afs*51	ENST00000346208		142	tcG/tc																																																																														
PTEN	0	MSKCC	GRCh37	10	89685287	89685287	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	159	286	0	ENST00000371953.3:c.182A>C	p.His61Pro	p.H61P	ENST00000371953	NM_000314.4	61	cAt/cCt																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137231	64137231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	131	615	1	ENST00000334205.4:c.1663G>A	p.Ala555Thr	p.A555T	ENST00000334205	NM_003942.2	555	Gcg/Acg																																																																														
ARID2	0	MSKCC	GRCh37	12	46245309	46245309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	159	444	0	ENST00000334344.6:c.3403C>T	p.Pro1135Ser	p.P1135S	ENST00000334344	NM_152641.2	1135	Cca/Tca																																																																														
LATS2	0	MSKCC	GRCh37	13	21563285	21563285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	299	656	1	ENST00000382592.4:c.634G>A	p.Val212Met	p.V212M	ENST00000382592	NM_014572.2	212	Gtg/Atg																																																																														
CDK8	0	MSKCC	GRCh37	13	26975436	26975436	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	152	481	0	ENST00000381527.3:c.1065del	p.Lys355AsnfsTer5	p.K355Nfs*5	ENST00000381527	NM_001260.1	354	ccA/cc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32953563	32953563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	169	613	2	ENST00000380152.3:c.8864C>T	p.Ala2955Val	p.A2955V	ENST00000380152		2955	gCt/gTt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900569	3900569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	99	626	0	ENST00000262367.5:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000262367	NM_004380.2	176	tGc/tAc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029321	14029321	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	131	354	1	ENST00000311895.7:c.1532A>G	p.Glu511Gly	p.E511G	ENST00000311895	NM_005236.2	511	gAg/gGg																																																																														
PALB2	0	MSKCC	GRCh37	16	23637666	23637666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	60	551	0	ENST00000261584.4:c.2639C>T	p.Ala880Val	p.A880V	ENST00000261584	NM_024675.3	880	gCc/gTc																																																																														
CTCF	0	MSKCC	GRCh37	16	67645155	67645156	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	247	594	0	ENST00000264010.4:c.421dup	p.Glu141GlyfsTer4	p.E141Gfs*4	ENST00000264010	NM_006565.3	140	-/G																																																																														
GNA11	0	MSKCC	GRCh37	19	3110173	3110173	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	250	458	0	ENST00000078429.4:c.163T>A	p.Phe55Ile	p.F55I	ENST00000078429	NM_002067.2	55	Ttc/Atc																																																																														
UPF1	0	MSKCC	GRCh37	19	18960928	18960928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	291	608	1	ENST00000262803.5:c.506C>T	p.Thr169Ile	p.T169I	ENST00000262803	NM_002911.3	169	aCc/aTc																																																																														
IRS1	0	MSKCC	GRCh37	2	227662789	227662791	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	283	580	0	ENST00000305123.5:c.664_666del	p.Phe222del	p.F222del	ENST00000305123	NM_005544.2	222	TTC/-																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589175	67589237	+	inframe_deletion	In_Frame_Del	DEL	GGAAATATGGCTTCTCTGACCCATTAACCTTCAGTTCTGTGGTTGAATTAATAAACCACTACC	GGAAATATGGCTTCTCTGACCCATTAACCTTCAGTTCTGTGGTTGAATTAATAAACCACTACC	-			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	36	344	0	ENST00000274335.5:c.1167_1229del	p.Lys389_Arg409del	p.K389_R409del	ENST00000274335		388	gGGAAATATGGCTTCTCTGACCCATTAACCTTCAGTTCTGTGGTTGAATTAATAAACCACTACCgg/ggg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969445	44969445	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	226	558	0	ENST00000377967.4:c.4128del	p.Glu1376AspfsTer8	p.E1376Dfs*8	ENST00000377967	NM_021140.2	1376	gAa/ga																																																																														
IRS2	0	MSKCC	GRCh37	13	110435750	110435750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	67	325	1	ENST00000375856.3:c.2651G>A	p.Arg884His	p.R884H	ENST00000375856	NM_003749.2	884	cGc/cAc																																																																														
MALT1	0	MSKCC	GRCh37	18	56412919	56412919	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	69	318	0	ENST00000348428.3:c.1933G>T	p.Asp645Tyr	p.D645Y	ENST00000348428	NM_006785.3	645	Gat/Tat																																																																														
EPCAM	0	MSKCC	GRCh37	2	47601061	47601061	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	177	636	0	ENST00000263735.4:c.299A>C	p.Asp100Ala	p.D100A	ENST00000263735	NM_002354.2	100	gAt/gCt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530146	212530146	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	34	435	0	ENST00000342788.4:c.1773A>T	p.Glu591Asp	p.E591D	ENST00000342788	NM_005235.2	591	gaA/gaT																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	25	423	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	118	445	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	39	254	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46285805	46285805	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	40	344	0	ENST00000334344.6:c.5073T>G	p.Cys1691Trp	p.C1691W	ENST00000334344	NM_152641.2	1691	tgT/tgG																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604786	48604787	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0029432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	52	395	0	ENST00000342988.3:c.1609_1610del	p.Asp537ArgfsTer39	p.D537Rfs*39	ENST00000342988	NM_005359.5	536	ctAGac/ctac																																																																														
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	211	453	1	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942068	71942069	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0029433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	140	763	1	ENST00000298229.2:c.1332_1333delinsAA	p.Trp445Arg	p.W445R	ENST00000298229	NM_001567.3	444	tcCTgg/tcAAgg																																																																														
DICER1	0	MSKCC	GRCh37	14	95590765	95590765	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	55	345	0	ENST00000343455.3:c.1144G>T	p.Glu382Ter	p.E382*	ENST00000343455	NM_177438.2	382	Gaa/Taa																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191298	185191298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	56	500	0	ENST00000265026.3:c.2179G>T	p.Asp727Tyr	p.D727Y	ENST00000265026	NM_004721.4	727	Gac/Tac																																																																														
EGFR	0	MSKCC	GRCh37	7	55241706	55241707	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0029433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	238	554	0	ENST00000275493.2:c.2154_2155delinsTT	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	718	ctGGgc/ctTTgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	166	664	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098962	178098962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	128	323	0	ENST00000397062.3:c.83T>C	p.Ile28Thr	p.I28T	ENST00000397062	NM_006164.4	28	aTa/aCa																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	44	394	0	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602767	10602767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	189	659	0	ENST00000171111.5:c.811G>T	p.Val271Leu	p.V271L	ENST00000171111	NM_203500.1	271	Gtg/Ttg																																																																														
CARD11	0	MSKCC	GRCh37	7	2978461	2978461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	94	571	0	ENST00000396946.4:c.869G>T	p.Gly290Val	p.G290V	ENST00000396946	NM_032415.4	290	gGg/gTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971142	21971142	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	66	433	0	ENST00000304494.5:c.216C>A	p.Cys72Ter	p.C72*	ENST00000304494	NM_000077.4	72	tgC/tgA																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971142	21971142	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	66	433	0	ENST00000304494.5:c.216C>A	p.Cys72Ter	p.C72*	ENST00000304494	NM_000077.4	72	tgC/tgA																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971142	21971142	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	66	433	0	ENST00000304494.5:c.216C>A	p.Cys72Ter	p.C72*	ENST00000304494	NM_000077.4	72	tgC/tgA																																																																														
RIT1	0	MSKCC	GRCh37	1	155880543	155880543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	241	556	1	ENST00000368323.3:c.10G>A	p.Gly4Arg	p.G4R	ENST00000368323	NM_006912.5	4	Gga/Aga																																																																														
INPP4A	0	MSKCC	GRCh37	2	99172041	99172041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	78	500	0	ENST00000074304.5:c.1607A>G	p.Lys536Arg	p.K536R	ENST00000074304	NM_001134224.1	536	aAg/aGg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095650	178095650	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	70	469	0	ENST00000397062.3:c.1681T>C	p.Tyr561His	p.Y561H	ENST00000397062	NM_006164.4	561	Tat/Cat																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356368	66356368	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	169	479	0	ENST00000273854.3:c.1129T>A	p.Trp377Arg	p.W377R	ENST00000273854	NM_004439.5	377	Tgg/Agg																																																																														
DAXX	0	MSKCC	GRCh37	6	33289665	33289665	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	100	441	0	ENST00000374542.5:c.38A>T	p.Asp13Val	p.D13V	ENST00000374542	NM_001141970.1	13	gAt/gTt																																																																														
VEGFA	0	MSKCC	GRCh37	6	43745247	43745247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	53	601	0	ENST00000523873.1:c.160C>T	p.Pro54Ser	p.P54S	ENST00000523873		54	Cca/Tca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139403524	139403524	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0029435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	99	498	1	ENST00000277541.6:c.2970-1G>T		p.X990_splice	ENST00000277541	NM_017617.3	990																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0029439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	143	515	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	315	702	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133883	55133883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	81	368	0	ENST00000257290.5:c.1096G>A	p.Asp366Asn	p.D366N	ENST00000257290	NM_006206.4	366	Gat/Aat																																																																														
MEN1	0	MSKCC	GRCh37	11	64577220	64577220	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	341	670	0	ENST00000337652.1:c.362T>G	p.Val121Gly	p.V121G	ENST00000337652	NM_130803.2	121	gTc/gGc																																																																														
CBFB	0	MSKCC	GRCh37	16	67132621	67132623	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0029439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	242	502	2	ENST00000412916.2:c.508_510delCAA	p.Gln170del	p.Q170del	ENST00000412916		168	agACAa/aga																																																																														
CDH1	0	MSKCC	GRCh37	16	68862181	68862181	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	122	557	3	ENST00000261769.5:c.2269G>T	p.Glu757Ter	p.E757*	ENST00000261769	NM_004360.3	757	Gaa/Taa																																																																														
MALT1	0	MSKCC	GRCh37	18	56367802	56367802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	267	412	0	ENST00000348428.3:c.628G>A	p.Asp210Asn	p.D210N	ENST00000348428	NM_006785.3	210	Gac/Aac																																																																														
ERCC3	0	MSKCC	GRCh37	2	128051204	128051204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	112	535	0	ENST00000285398.2:c.119C>T	p.Ser40Leu	p.S40L	ENST00000285398	NM_000122.1	40	tCg/tTg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024689	31024689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	145	463	0	ENST00000375687.4:c.4174C>T	p.Pro1392Ser	p.P1392S	ENST00000375687	NM_015338.5	1392	Ccc/Tcc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67522621	67522621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	70	321	0	ENST00000274335.5:c.118C>G	p.Leu40Val	p.L40V	ENST00000274335		40	Ctt/Gtt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67569301	67569301	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	105	360	0	ENST00000274335.5:c.418G>T	p.Glu140Ter	p.E140*	ENST00000274335		140	Gaa/Taa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149510159	149510159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	287	577	1	ENST00000261799.4:c.1310G>A	p.Arg437His	p.R437H	ENST00000261799	NM_002609.3	437	cGt/cAt																																																																														
FLT4	0	MSKCC	GRCh37	5	180041117	180041117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1653	149	770	0	ENST00000261937.6:c.3282G>C	p.Gln1094His	p.Q1094H	ENST00000261937	NM_182925.4	1094	caG/caC																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31380570	31380570	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	113	572	1	ENST00000328111.2:c.1060C>T	p.Gln354Ter	p.Q354*	ENST00000328111	NM_006892.3	354	Caa/Taa																																																																														
NF2	0	MSKCC	GRCh37	22	30077476	30077486	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCAAGACAG	ACTCAAGACAG	-			P-0029442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	306	666	1	ENST00000338641.4:c.1624_1634del	p.Leu542AsnfsTer19	p.L542Nfs*19	ENST00000338641	NM_000268.3	541	gaACTCAAGACAGaa/gaaa																																																																														
DAXX	0	MSKCC	GRCh37	6	33288770	33288771	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACGGTAGGGGATGCGCTGCTCTATGA			P-0029442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	65	617	0	ENST00000374542.5:c.755_781dup	p.Val252_Arg260dup	p.V252_R260dup	ENST00000374542	NM_001141970.1	252	ggc/gTCATAGAGCAGCGCATCCCCTACCGTGgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057874	27057874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	355	717	0	ENST00000324856.7:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000324856	NM_006015.4	528	Cag/Tag																																																																														
DDR2	0	MSKCC	GRCh37	1	162746131	162746131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	178	372	1	ENST00000367921.3:c.2254C>T	p.Arg752Cys	p.R752C	ENST00000367921	NM_006182.2	752	Cgc/Tgc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	589	494	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	889	644	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870996	12870996	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	195	504	0	ENST00000228872.4:c.223G>T	p.Glu75Ter	p.E75*	ENST00000228872	NM_004064.3	75	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	704	657	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	285	408	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
EPHB1	0	MSKCC	GRCh37	3	134898731	134898731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	206	457	0	ENST00000398015.3:c.1789C>A	p.Pro597Thr	p.P597T	ENST00000398015	NM_004441.4	597	Ccc/Acc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589153	67589155	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0029445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	97	337	0	ENST00000274335.5:c.1142_1144del	p.Ile381del	p.I381del	ENST00000274335		381	ATC/-																																																																														
FYN	0	MSKCC	GRCh37	6	112025222	112025222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	264	556	2	ENST00000368678.4:c.527G>A	p.Arg176His	p.R176H	ENST00000368678		176	cGc/cAc																																																																														
SOX17	0	MSKCC	GRCh37	8	55370923	55370923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	417	676	0	ENST00000297316.4:c.225C>A	p.Phe75Leu	p.F75L	ENST00000297316	NM_022454.3	75	ttC/ttA																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101539	27101540	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0029445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	362	757	1	ENST00000324856.7:c.4821_4822delinsA	p.His1608ThrfsTer4	p.H1608Tfs*4	ENST00000324856	NM_006015.4	1607	ctGCac/ctAac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	743	591	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0029449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	369	624	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
INPPL1	0	MSKCC	GRCh37	11	71948695	71948695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	444	674	2	ENST00000298229.2:c.3407C>T	p.Ala1136Val	p.A1136V	ENST00000298229	NM_001567.3	1136	gCc/gTc																																																																														
RB1	0	MSKCC	GRCh37	13	48937034	48937034	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	877	571	2	ENST00000267163.4:c.802G>T	p.Glu268Ter	p.E268*	ENST00000267163	NM_000321.2	268	Gaa/Taa																																																																														
MYCN	0	MSKCC	GRCh37	2	16082718	16082718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	28	60	0	ENST00000281043.3:c.532G>A	p.Glu178Lys	p.E178K	ENST00000281043	NM_005378.4	178	Gag/Aag																																																																														
TET2	0	MSKCC	GRCh37	4	106193871	106193871	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	157	497	0	ENST00000380013.4:c.4333C>G	p.Gln1445Glu	p.Q1445E	ENST00000380013	NM_001127208.2	1445	Cag/Gag																																																																														
MTOR	0	MSKCC	GRCh37	1	11288972	11288972	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	163	522	0	ENST00000361445.4:c.2783A>T	p.Asp928Val	p.D928V	ENST00000361445	NM_004958.3	928	gAc/gTc																																																																														
SOX2	0	MSKCC	GRCh37	3	181430151	181430151	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0029450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	56	76	0	ENST00000325404.1:c.3G>A	p.Met1?	p.M1?	ENST00000325404	NM_003106.3	1	atG/atA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0029451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	50	568	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	11	290	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	48878073	48878233	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACGGCCGCCACCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCGCCGCCGCCGCCCCCTCCTGAGGAGGACCCAGAGCAGGACAGCGGCCCGGAGGACCTGCCTCTCGTCAGGTGAGCGAGCAGAGCCGCCGTCGCCTCACGCGGGAAGGGCGCCCCGGG	ACGGCCGCCACCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCGCCGCCGCCGCCCCCTCCTGAGGAGGACCCAGAGCAGGACAGCGGCCCGGAGGACCTGCCTCTCGTCAGGTGAGCGAGCAGAGCCGCCGTCGCCTCACGCGGGAAGGGCGCCCCGGG	-			P-0029453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	153	221	0	ENST00000267163.4:c.25_137+48del		p.X9_splice	ENST00000267163	NM_000321.2	9																																																																															
TP53	0	MSKCC	GRCh37	17	7578485	7578486	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCAACCC			P-0029453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	469	758	0	ENST00000269305.4:c.437_444dup	p.Ser149GlyfsTer24	p.S149Gfs*24	ENST00000269305	NM_001126112.2	148	-/GGGTTGAT																																																																														
FOXP1	0	MSKCC	GRCh37	3	71064705	71064705	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	119	533	0	ENST00000318789.4:c.969T>A	p.Phe323Leu	p.F323L	ENST00000318789	NM_032682.5	323	ttT/ttA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	102	630	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	253	805	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	105	353	2	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	143	739	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																														
LATS2	0	MSKCC	GRCh37	13	21557569	21557569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	123	745	3	ENST00000382592.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000382592	NM_014572.2	759	cGg/cAg																																																																														
RBM10	0	MSKCC	GRCh37	X	47028790	47028790	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	328	461	2	ENST00000329236.7:c.94C>T	p.Arg32Ter	p.R32*	ENST00000329236	NM_001204466.1	32	Cga/Tga																																																																														
EGFR	0	MSKCC	GRCh37	7	55249007	55249007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147149347		P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	278	610	0	ENST00000275493.2:c.2305G>A	p.Val769Met	p.V769M	ENST00000275493	NM_005228.3	769	Gtg/Atg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71945409	71945411	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	146	845	0	ENST00000298229.2:c.2299_2301del	p.Ile767del	p.I767del	ENST00000298229	NM_001567.3	766	tTCAtc/ttc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99500519	99500519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	198	724	4	ENST00000268035.6:c.3952G>A	p.Asp1318Asn	p.D1318N	ENST00000268035	NM_000875.3	1318	Gac/Aac																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967244	134967244	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs151302345		P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	106	648	0	ENST00000398015.3:c.2583G>A	p.Trp861Ter	p.W861*	ENST00000398015	NM_004441.4	861	tgG/tgA																																																																														
NSD1	0	MSKCC	GRCh37	5	176638411	176638411	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	41	721	1	ENST00000439151.2:c.3011A>G	p.Asp1004Gly	p.D1004G	ENST00000439151	NM_022455.4	1004	gAc/gGc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468215	50468215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	360	754	1	ENST00000331340.3:c.1450C>A	p.His484Asn	p.H484N	ENST00000331340	NM_006060.4	484	Cac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	34	630	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399158	139399158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	37	591	0	ENST00000277541.6:c.4985G>A	p.Arg1662Gln	p.R1662Q	ENST00000277541	NM_017617.3	1662	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	298	649	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	176	569	9	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023324	27023327	+	frameshift_variant	Frame_Shift_Del	DEL	CCGC	CCGC	-			P-0029463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	73	134	0	ENST00000324856.7:c.432_435del	p.Pro145GlnfsTer86	p.P145Qfs*86	ENST00000324856	NM_006015.4	144	CCGCcc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023622	27023634	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCGGCGGCTGC	CGGCGGCGGCTGC	-			P-0029463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	228	345	0	ENST00000324856.7:c.732_744del	p.Ala245ProfsTer114	p.A245Pfs*114	ENST00000324856	NM_006015.4	243	gCGGCGGCGGCTGCc/gc																																																																														
RET	0	MSKCC	GRCh37	10	43600450	43600511	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTGGGCCCTGGACCGCGAGCAGCGGGAGAAGTACGAGCTGGTGGCCGTGTGCACCGTGCA	CGCTGGGCCCTGGACCGCGAGCAGCGGGAGAAGTACGAGCTGGTGGCCGTGTGCACCGTGCA	-			P-0029463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	249	486	0	ENST00000355710.3:c.679_740del	p.Trp227ArgfsTer106	p.W227Rfs*106	ENST00000355710	NM_020975.4	226	CGCTGGGCCCTGGACCGCGAGCAGCGGGAGAAGTACGAGCTGGTGGCCGTGTGCACCGTGCAc/c																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481347	56481378	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTTCCCAACCAGGTCCCCCCTGTCATGAGG	TCCTTCCCAACCAGGTCCCCCCTGTCATGAGG	-			P-0029463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	191	561	0	ENST00000267101.3:c.548-13_566del		p.X183_splice	ENST00000267101	NM_001982.3	183																																																																															
FAM58A	0	MSKCC	GRCh37	X	152860035	152860035	+	synonymous_variant	Silent	SNP	G	G	A			P-0029463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	182	683	0	ENST00000406277.2:c.393C>T	p.Arg131=	p.R131=	ENST00000406277	NM_152274.4	131	cgC/cgT																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	492	809	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NF1	0	MSKCC	GRCh37	17	29496924	29496927	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0029464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	175	402	0	ENST00000358273.4:c.499_502delTGTT	p.Cys167GlnfsTer10	p.C167Qfs*10	ENST00000358273	NM_001042492.2	165	acTGTT/ac																																																																														
PRKD1	0	MSKCC	GRCh37	14	30105631	30105631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	206	830	0	ENST00000331968.5:c.1055G>T	p.Arg352Met	p.R352M	ENST00000331968	NM_002742.2	352	aGg/aTg																																																																														
NF1	0	MSKCC	GRCh37	17	29486060	29486060	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	237	461	1	ENST00000358273.4:c.237A>T	p.Leu79Phe	p.L79F	ENST00000358273	NM_001042492.2	79	ttA/ttT																																																																														
EPHA7	0	MSKCC	GRCh37	6	94067974	94067974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0029464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	78	334	0	ENST00000369303.4:c.988A>T	p.Arg330Trp	p.R330W	ENST00000369303	NM_004440.3	330	Agg/Tgg																																																																														
AGO2	0	MSKCC	GRCh37	8	141566285	141566285	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	146	485	0	ENST00000220592.5:c.1127A>T	p.Gln376Leu	p.Q376L	ENST00000220592	NM_012154.3	376	cAa/cTa																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	74	351	3	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	388	497	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
TET2	0	MSKCC	GRCh37	4	106182928	106182928	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	161	495	0	ENST00000380013.4:c.3967G>T	p.Glu1323Ter	p.E1323*	ENST00000380013	NM_001127208.2	1323	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	458	615	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
ARID1A	0	MSKCC	GRCh37	1	27097782	27097782	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	400	560	1	ENST00000324856.7:c.3371A>T	p.Lys1124Met	p.K1124M	ENST00000324856	NM_006015.4	1124	aAg/aTg																																																																														
TP63	0	MSKCC	GRCh37	3	189604233	189604233	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1694	284	798	0	ENST00000264731.3:c.1400A>C	p.Asn467Thr	p.N467T	ENST00000264731	NM_003722.4	467	aAc/aCc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1906005	1906005	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	208	870	0	ENST00000382891.5:c.660C>A	p.Tyr220Ter	p.Y220*	ENST00000382891	NM_133335.3	220	taC/taA																																																																														
FAM175A	0	MSKCC	GRCh37	4	84384055	84384645	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTAAACAAAATAGAATAACAGTTCAACATATAACATTTCTTCTACAAAGCTTTTATAATTAACTATTTGTAAGTAAAATTAAGTCAAAAAGATTTTAACAGTTGTATTATCTAAAGTGAGGATAACATACATAATTCTGAATTCTAATTTATATGCCACAGTATTCTAAGACAAAATTAAAGTTGTGTTCTTTCATGTCAGCAATATAGCTACCATAGTATTATGTTCTTTAAAAGCACAGAAAGGGCCGAGCGCAGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACTTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTATTAAAAATACAAAAAAAATTAGCCAGGCATGGTGGCAGGCACCTGGAATCCCAGCGTTTCAGGAGGCTGAGGCAGGAGAATCGCTTGACCCCAGGAGGCAGAGGTTGCAGTAAGCTGAGATCACACCTTTGCACTCCAACCTAGGCGACAGAGCGAGACTCCGTCTCAAAAATAAATAAATAAATAAAAATTTTTAGCACAGAAAGTAGAGATGTGTTGTTTACTTA	CCTAAACAAAATAGAATAACAGTTCAACATATAACATTTCTTCTACAAAGCTTTTATAATTAACTATTTGTAAGTAAAATTAAGTCAAAAAGATTTTAACAGTTGTATTATCTAAAGTGAGGATAACATACATAATTCTGAATTCTAATTTATATGCCACAGTATTCTAAGACAAAATTAAAGTTGTGTTCTTTCATGTCAGCAATATAGCTACCATAGTATTATGTTCTTTAAAAGCACAGAAAGGGCCGAGCGCAGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACTTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTATTAAAAATACAAAAAAAATTAGCCAGGCATGGTGGCAGGCACCTGGAATCCCAGCGTTTCAGGAGGCTGAGGCAGGAGAATCGCTTGACCCCAGGAGGCAGAGGTTGCAGTAAGCTGAGATCACACCTTTGCACTCCAACCTAGGCGACAGAGCGAGACTCCGTCTCAAAAATAAATAAATAAATAAAAATTTTTAGCACAGAAAGTAGAGATGTGTTGTTTACTTA	-			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	28	569	0	ENST00000321945.7:c.796+2_797del		p.X266_splice	ENST00000321945	NM_139076.2	266																																																																															
IL7R	0	MSKCC	GRCh37	5	35876167	35876167	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	608	596	1	ENST00000303115.3:c.959T>A	p.Val320Glu	p.V320E	ENST00000303115	NM_002185.3	320	gTg/gAg																																																																														
BRAF	0	MSKCC	GRCh37	7	140494266	140494266	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	68	863	1	ENST00000288602.6:c.982C>T	p.Pro328Ser	p.P328S	ENST00000288602	NM_004333.4	328	Ccc/Tcc																																																																														
ARAF	0	MSKCC	GRCh37	X	47424299	47424383	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGTGCAGGGTGGACGGTGGGGGTGGACCATGGTTGGGGGTGTCCTTGACCAGGTCTCAAACTTCCCTGCTCTGTGGCATCAG	GTGAGTGCAGGGTGGACGGTGGGGGTGGACCATGGTTGGGGGTGTCCTTGACCAGGTCTCAAACTTCCCTGCTCTGTGGCATCAG	-			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	57	611	0	ENST00000377045.4:c.303+3_305del		p.X101_splice	ENST00000377045	NM_001654.4	101																																																																															
ARAF	0	MSKCC	GRCh37	X	47424539	47424650	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGCCCAGCCTGGGGTGGGTGGGGGGATGGGGAGCACAGAGGCCCAGCCACGAGGCCCTTACAGACAGCTGACCCGTGTCCCCTTGCTTTATACCCTTCATGCCCTCAAG	GTGAGCCCAGCCTGGGGTGGGTGGGGGGATGGGGAGCACAGAGGCCCAGCCACGAGGCCCTTACAGACAGCTGACCCGTGTCCCCTTGCTTTATACCCTTCATGCCCTCAAG	-			P-0029465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	103	467	0	ENST00000377045.4:c.458+3_460del		p.X153_splice	ENST00000377045	NM_001654.4	153																																																																															
MST1	0	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	16	45	2	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																														
CDK12	0	MSKCC	GRCh37	17	37618715	37618716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	524	594	3	ENST00000447079.4:c.397dupA	p.Ser133LysfsTer24	p.S133Kfs*24	ENST00000447079	NM_015083.1	131	gaa/gAaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8389278	8389278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	76	700	1	ENST00000356435.5:c.4340G>A	p.Arg1447Gln	p.R1447Q	ENST00000356435		1447	cGg/cAg																																																																														
RASA1	0	MSKCC	GRCh37	5	86668002	86668002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	32	408	1	ENST00000274376.6:c.1766G>A	p.Arg589His	p.R589H	ENST00000274376	NM_002890.2	589	cGc/cAc																																																																														
BIRC3	0	MSKCC	GRCh37	11	102206728	102206728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	63	493	0	ENST00000263464.3:c.1356G>C	p.Met452Ile	p.M452I	ENST00000263464	NM_001165.4	452	atG/atC																																																																														
NF1	0	MSKCC	GRCh37	17	29550566	29550585	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AATTTCTTCTTAAAAATAAG	AATTTCTTCTTAAAAATAAG	-			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	78	398	0	ENST00000358273.4:c.1826_1845del	p.Lys609ThrfsTer4	p.K609Tfs*4	ENST00000358273	NM_001042492.2	609	aAATTTCTTCTTAAAAATAAG/a																																																																														
WHSC1	0	MSKCC	GRCh37	4	1976630	1976630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	81	771	1	ENST00000382891.5:c.3413G>T	p.Arg1138Leu	p.R1138L	ENST00000382891	NM_133335.3	1138	cGa/cTa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223802	53223802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	141	514	0	ENST00000375401.3:c.3557C>G	p.Ser1186Cys	p.S1186C	ENST00000375401	NM_004187.3	1186	tCt/tGt																																																																														
KIT	0	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	253	534	0	ENST00000288135.5:c.1669T>C	p.Trp557Arg	p.W557R	ENST00000288135	NM_000222.2	557	Tgg/Cgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106497	27106498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	236	722	0	ENST00000324856.7:c.6109dup	p.Gln2037ProfsTer62	p.Q2037Pfs*62	ENST00000324856	NM_006015.4	2036	-/C																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871242	12871242	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	102	258	1	ENST00000228872.4:c.469A>T	p.Thr157Ser	p.T157S	ENST00000228872	NM_004064.3	157	Acc/Tcc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149460516	149460516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	331	704	1	ENST00000286301.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000286301	NM_005211.3	41	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7579412	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAGGAG	GGCCAGGAG	A			P-0029468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	430	701	0	ENST00000269305.4:c.267_275delinsT	p.Ser90ProfsTer56	p.S90Pfs*56	ENST00000269305	NM_001126112.2	89	ccCTCCTGGCCc/ccTc																																																																														
BRAF	0	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	38	649	0	ENST00000288602.6:c.1790T>A	p.Leu597Gln	p.L597Q	ENST00000288602	NM_004333.4	597	cTa/cAa																																																																														
ALK	0	MSKCC	GRCh37	2	29519913	29519913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	44	513	0	ENST00000389048.3:c.1658C>T	p.Ser553Phe	p.S553F	ENST00000389048	NM_004304.4	553	tCc/tTc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061116	38061199	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTT	AGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTT	GGGG			P-0029469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	35	493	2	ENST00000250448.2:c.790_873delinsCCCC	p.Lys264ProfsTer12	p.K264Pfs*12	ENST00000250448	NM_004496.3	264	AAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCT/CCCC																																																																														
BRAF	0	MSKCC	GRCh37	7	140434507	140434507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	30	501	0	ENST00000288602.6:c.2191C>G	p.Pro731Ala	p.P731A	ENST00000288602	NM_004333.4	731	Ccc/Gcc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87563452	87563452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	44	788	0	ENST00000277120.3:c.1840G>A	p.Glu614Lys	p.E614K	ENST00000277120		614	Gag/Aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0029474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	91	261	0	ENST00000371953.3:c.1027-1G>A		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
PTPRT	0	MSKCC	GRCh37	20	40944505	40944505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	94	672	1	ENST00000373198.4:c.1997C>T	p.Ala666Val	p.A666V	ENST00000373198	NM_133170.3	666	gCt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578429	7578429	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	712	814	0	ENST00000269305.4:c.501delG	p.Gln167HisfsTer3	p.Q167Hfs*3	ENST00000269305	NM_001126112.2	167	caG/ca																																																																														
DUSP4	0	MSKCC	GRCh37	8	29195903	29195903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	143	779	1	ENST00000240100.2:c.695G>A	p.Cys232Tyr	p.C232Y	ENST00000240100	NM_001394.6	232	tGc/tAc																																																																														
RRAGC	0	MSKCC	GRCh37	1	39322754	39322754	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	112	548	0	ENST00000373001.3:c.238G>A	p.Val80Met	p.V80M	ENST00000373001	NM_022157.3	80	Gtg/Atg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176132118	176132118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	147	620	0	ENST00000367669.3:c.649C>T	p.His217Tyr	p.H217Y	ENST00000367669	NM_022457.5	217	Cac/Tac																																																																														
LATS2	0	MSKCC	GRCh37	13	21619972	21619972	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	238	767	0	ENST00000382592.4:c.194G>C	p.Arg65Thr	p.R65T	ENST00000382592	NM_014572.2	65	aGa/aCa																																																																														
NUP93	0	MSKCC	GRCh37	16	56867254	56867254	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	24	520	0	ENST00000308159.5:c.1473T>G	p.His491Gln	p.H491Q	ENST00000308159	NM_014669.4	491	caT/caG																																																																														
PLCG2	0	MSKCC	GRCh37	16	81968080	81968080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	171	771	0	ENST00000359376.3:c.2786A>G	p.Glu929Gly	p.E929G	ENST00000359376	NM_002661.3	929	gAg/gGg																																																																														
JAK3	0	MSKCC	GRCh37	19	17955201	17955201	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1686	268	934	0	ENST00000458235.1:c.26C>G	p.Pro9Arg	p.P9R	ENST00000458235	NM_000215.3	9	cCc/cGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	133	543	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	153	746	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513168	106513168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	85	331	0	ENST00000359195.3:c.2072T>C	p.Ile691Thr	p.I691T	ENST00000359195	NM_002649.2	691	aTt/aCt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974809	21974809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	19	149	0	ENST00000304494.5:c.18del	p.Ser7AlafsTer19	p.S7Afs*19	ENST00000304494	NM_000077.4	6	ggG/gg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974809	21974809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	19	149	0	ENST00000304494.5:c.18del	p.Ser7AlafsTer19	p.S7Afs*19	ENST00000304494	NM_000077.4	6	ggG/gg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	158	631	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	151	418	0				ENST00000310581	NM_198253.2																																																																																
ROS1	0	MSKCC	GRCh37	6	117710578	117710578	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142303126		P-0029479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	166	423	2	ENST00000368508.3:c.1694C>T	p.Ser565Leu	p.S565L	ENST00000368508	NM_002944.2	565	tCg/tTg																																																																														
CYLD	0	MSKCC	GRCh37	16	50783622	50783622	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	21	361	0	ENST00000398568.2:c.13T>G	p.Leu5Val	p.L5V	ENST00000398568	NM_001042412.1	5	Tta/Gta																																																																														
JAK3	0	MSKCC	GRCh37	19	17945994	17945994	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	132	548	0	ENST00000458235.1:c.1945T>C	p.Ser649Pro	p.S649P	ENST00000458235	NM_000215.3	649	Tct/Cct																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	57	440	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420090	49420090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	66	444	0	ENST00000301067.7:c.15659G>C	p.Arg5220Pro	p.R5220P	ENST00000301067	NM_003482.3	5220	cGc/cCc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061191	38061211	+	inframe_deletion	In_Frame_Del	DEL	GAAGCGCTTCTGGCGGCGCAA	GAAGCGCTTCTGGCGGCGCAA	-			P-0029508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	87	359	0	ENST00000250448.2:c.778_798del	p.Leu260_Phe266del	p.L260_F266del	ENST00000250448	NM_004496.3	260	TTGCGCCGCCAGAAGCGCTTC/-																																																																														
CDK12	0	MSKCC	GRCh37	17	37627544	37627545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	73	553	0	ENST00000447079.4:c.1461dup	p.Glu488ArgfsTer6	p.E488Rfs*6	ENST00000447079	NM_015083.1	487	tcc/tCcc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	21	399	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106465	27106465	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	25	539	0	ENST00000324856.7:c.6076C>T	p.Gln2026Ter	p.Q2026*	ENST00000324856	NM_006015.4	2026	Cag/Tag																																																																														
ELF3	0	MSKCC	GRCh37	1	201981260	201981261	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	72	585	0	ENST00000359651.3:c.342dup	p.Gly115TrpfsTer20	p.G115Wfs*20	ENST00000359651		113	-/T																																																																														
RASA1	0	MSKCC	GRCh37	5	86670709	86670711	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0029511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	10	210	0	ENST00000274376.6:c.1989_1991del	p.Lys664del	p.K664del	ENST00000274376	NM_002890.2	663	AAG/-																																																																														
MTOR	0	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	56	521	0	ENST00000361445.4:c.7280T>G	p.Leu2427Arg	p.L2427R	ENST00000361445	NM_004958.3	2427	cTg/cGg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43714188	43714188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	30	741	0	ENST00000382044.4:c.3965G>T	p.Ser1322Ile	p.S1322I	ENST00000382044	NM_001141980.1	1322	aGt/aTt																																																																														
VHL	0	MSKCC	GRCh37	3	10191470	10191470	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	44	327	0	ENST00000256474.2:c.464-1G>T		p.X155_splice	ENST00000256474	NM_000551.3	155																																																																															
MAP3K13	0	MSKCC	GRCh37	3	185161334	185161334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	20	563	0	ENST00000265026.3:c.761G>T	p.Arg254Leu	p.R254L	ENST00000265026	NM_004721.4	254	cGa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	134	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0029516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	38	415	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0029516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	23	262	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
VHL	0	MSKCC	GRCh37	3	10188287	10188287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	98	539	0	ENST00000256474.2:c.430G>A	p.Gly144Arg	p.G144R	ENST00000256474	NM_000551.3	144	Gga/Aga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114799869	114799869	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	34	536	0	ENST00000543371.1:c.536C>G	p.Ser179Ter	p.S179*	ENST00000543371	NM_001198531.1	179	tCa/tGa																																																																														
FANCA	0	MSKCC	GRCh37	16	89882334	89882334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	38	461	0	ENST00000389301.3:c.140C>T	p.Ala47Val	p.A47V	ENST00000389301	NM_000135.2	47	gCt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577084	7577111	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGTGCGCCGGTCTCTCCCAGGACAGG	TCTGTGCGCCGGTCTCTCCCAGGACAGG	-			P-0029516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	87	607	0	ENST00000269305.4:c.827_854del	p.Ala276GlyfsTer60	p.A276Gfs*60	ENST00000269305	NM_001126112.2	276	gCCTGTCCTGGGAGAGACCGGCGCACAGAg/gg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584575	48584575	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	18	411	0	ENST00000342988.3:c.748C>T	p.Gln250Ter	p.Q250*	ENST00000342988	NM_005359.5	250	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	15	339	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0029522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	44	428	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0029522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	78	375	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	106	438	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56171040	56171040	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	55	211	0	ENST00000399503.3:c.1870delC	p.Gln624ArgfsTer32	p.Q624Rfs*32	ENST00000399503	NM_005921.1	623	tCc/tc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0029523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	16	250	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
GATA1	0	MSKCC	GRCh37	X	48650368	48650368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	273	233	0	ENST00000376670.3:c.338G>A	p.Arg113His	p.R113H	ENST00000376670	NM_002049.3	113	cGc/cAc																																																																														
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0029524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	241	502	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
ROS1	0	MSKCC	GRCh37	6	117704487	117704487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	127	275	0	ENST00000368508.3:c.2489G>T	p.Gly830Val	p.G830V	ENST00000368508	NM_002944.2	830	gGg/gTg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099079	157099079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	111	231	0	ENST00000346085.5:c.16G>A	p.Gly6Ser	p.G6S	ENST00000346085	NM_020732.3	6	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	64	430	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0029533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	182	399	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0029533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	766	593	1	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118363896	118363896	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	192	324	0	ENST00000534358.1:c.5129A>T	p.Asp1710Val	p.D1710V	ENST00000534358	NM_005933.3	1710	gAt/gTt																																																																														
FANCA	0	MSKCC	GRCh37	16	89851282	89851282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	436	407	0	ENST00000389301.3:c.1450G>C	p.Glu484Gln	p.E484Q	ENST00000389301	NM_000135.2	484	Gag/Cag																																																																														
BRD4	0	MSKCC	GRCh37	19	15376227	15376227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	188	392	0	ENST00000263377.2:c.787C>G	p.Pro263Ala	p.P263A	ENST00000263377	NM_058243.2	263	Cca/Gca																																																																														
UPF1	0	MSKCC	GRCh37	19	18961655	18961655	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	256	509	0	ENST00000262803.5:c.788A>G	p.Asn263Ser	p.N263S	ENST00000262803	NM_002911.3	263	aAc/aGc																																																																														
MDM2	0	MSKCC	GRCh37	12	69230517	69230517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	63	324	0	ENST00000462284.1:c.906A>T	p.Glu302Asp	p.E302D	ENST00000462284	NM_002392.5	302	gaA/gaT																																																																														
FANCA	0	MSKCC	GRCh37	16	89838180	89838180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	31	386	0	ENST00000389301.3:c.2057C>T	p.Ala686Val	p.A686V	ENST00000389301	NM_000135.2	686	gCt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	213	513	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
RAD51C	0	MSKCC	GRCh37	17	56780598	56780598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	56	433	0	ENST00000337432.4:c.613C>G	p.Leu205Val	p.L205V	ENST00000337432	NM_058216.2	205	Ctt/Gtt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211121	36211121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	102	692	0	ENST00000222270.7:c.872G>A	p.Gly291Glu	p.G291E	ENST00000222270	NM_014727.1	291	gGa/gAa																																																																														
INHA	0	MSKCC	GRCh37	2	220439878	220439878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	57	520	0	ENST00000243786.2:c.731C>G	p.Ser244Cys	p.S244C	ENST00000243786	NM_002191.3	244	tCt/tGt																																																																														
APC	0	MSKCC	GRCh37	5	112175447	112175447	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	63	226	0	ENST00000257430.4:c.4156A>T	p.Arg1386Ter	p.R1386*	ENST00000257430	NM_000038.5	1386	Aga/Tga																																																																														
JAK2	0	MSKCC	GRCh37	9	5064896	5064896	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	23	299	0	ENST00000381652.3:c.1070G>C	p.Ser357Thr	p.S357T	ENST00000381652	NM_004972.3	357	aGc/aCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0029540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	207	646	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	47	340	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
RB1	0	MSKCC	GRCh37	13	49033946	49033946	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	56	386	2	ENST00000267163.4:c.2083A>T	p.Met695Leu	p.M695L	ENST00000267163	NM_000321.2	695	Atg/Ttg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25964917	25964917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	64	379	0	ENST00000435504.4:c.4289C>T	p.Ser1430Phe	p.S1430F	ENST00000435504		1430	tCc/tTc																																																																														
APC	0	MSKCC	GRCh37	5	112175759	112175759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	37	309	0	ENST00000257430.4:c.4468del	p.His1490IlefsTer17	p.H1490Ifs*17	ENST00000257430	NM_000038.5	1490	Cat/at																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	480	592	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	441	640	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CBL	0	MSKCC	GRCh37	11	119149251	119149251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	367	488	0	ENST00000264033.4:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000264033	NM_005188.3	420	cGa/cAa																																																																														
KIT	0	MSKCC	GRCh37	4	55599332	55599332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2157	641	392	0	ENST00000288135.5:c.2458G>T	p.Asp820Tyr	p.D820Y	ENST00000288135	NM_000222.2	820	Gat/Tat																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	334	266	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
B2M	0	MSKCC	GRCh37	15	45007871	45007872	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	323	353	0	ENST00000558401.1:c.319_320delTT	p.Leu107ValfsTer7	p.L107Vfs*7	ENST00000558401	NM_004048.2	106	acTTtg/actg																																																																														
ATRX	0	MSKCC	GRCh37	X	76813014	76813014	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	361	260	1	ENST00000373344.5:c.6607G>T	p.Glu2203Ter	p.E2203*	ENST00000373344	NM_000489.3	2203	Gag/Tag																																																																														
MRE11A	0	MSKCC	GRCh37	11	94194110	94194110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	273	421	3	ENST00000323929.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000323929	NM_005591.3	440	Gca/Aca																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980558	1980559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs752037034		P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	401	563	14	ENST00000382891.5:c.4028dup	p.Glu1344ArgfsTer91	p.E1344Rfs*91	ENST00000382891	NM_133335.3	1340	-/C																																																																														
APC	0	MSKCC	GRCh37	5	112176350	112176350	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	222	338	0	ENST00000257430.4:c.5059C>T	p.Arg1687Ter	p.R1687*	ENST00000257430	NM_000038.5	1687	Cga/Tga																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186505652	186505652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	204	278	0	ENST00000323963.5:c.1060C>T	p.Arg354Cys	p.R354C	ENST00000323963		354	Cgt/Tgt																																																																														
DDR2	0	MSKCC	GRCh37	1	162737073	162737093	+	inframe_deletion	In_Frame_Del	DEL	TGGCCATCATCTTTATCCTCC	TGGCCATCATCTTTATCCTCC	-			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	277	427	0	ENST00000367921.3:c.1227_1247del	p.Phe410_Ile416del	p.F410_I416del	ENST00000367921	NM_006182.2	406	gTGGCCATCATCTTTATCCTCCtg/gtg																																																																														
PGR	0	MSKCC	GRCh37	11	100998489	100998489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	357	398	0	ENST00000325455.5:c.1313C>T	p.Ala438Val	p.A438V	ENST00000325455	NM_001202474.3	438	gCg/gTg																																																																														
SETD8	0	MSKCC	GRCh37	12	123892041	123892041	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	296	414	0	ENST00000330479.4:c.850G>A	p.Val284Met	p.V284M	ENST00000330479	NM_020382.3	284	Gtg/Atg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30046581	30046581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	349	433	0	ENST00000331968.5:c.2602A>G	p.Arg868Gly	p.R868G	ENST00000331968	NM_002742.2	868	Agg/Ggg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18280034	18280034	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs202137312		P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	270	339	0	ENST00000222254.8:c.2117A>G	p.Asp706Gly	p.D706G	ENST00000222254	NM_005027.3	706	gAc/gGc																																																																														
KIT	0	MSKCC	GRCh37	4	55593606	55593606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1981	608	440	0	ENST00000288135.5:c.1672A>G	p.Lys558Glu	p.K558E	ENST00000288135	NM_000222.2	558	Aag/Gag																																																																														
FAT1	0	MSKCC	GRCh37	4	187560874	187560874	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	169	333	0	ENST00000441802.2:c.3642+2T>C		p.X1214_splice	ENST00000441802	NM_005245.3	1214																																																																															
RICTOR	0	MSKCC	GRCh37	5	38953633	38953633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202045287		P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	282	223	0	ENST00000357387.3:c.2720G>A	p.Arg907His	p.R907H	ENST00000357387	NM_152756.3	907	cGt/cAt																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519224	137519224	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55924399		P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	254	321	1	ENST00000367739.4:c.1414G>A	p.Gly472Ser	p.G472S	ENST00000367739	NM_000416.2	472	Ggt/Agt																																																																														
ABL1	0	MSKCC	GRCh37	9	133753909	133753909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	351	466	1	ENST00000318560.5:c.1378C>T	p.Arg460Cys	p.R460C	ENST00000318560	NM_005157.4	460	Cgc/Tgc																																																																														
BCOR	0	MSKCC	GRCh37	X	39930276	39930276	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	405	290	0	ENST00000378444.4:c.3188A>C	p.Lys1063Thr	p.K1063T	ENST00000378444	NM_001123385.1	1063	aAg/aCg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0029545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	11	207	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
MDM4	0	MSKCC	GRCh37	1	204506572	204506572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	36	409	0	ENST00000367182.3:c.358C>T	p.Leu120Phe	p.L120F	ENST00000367182	NM_001278516.1	120	Ctc/Ttc																																																																														
STK11	0	MSKCC	GRCh37	19	1218414	1218414	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0029545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	50	450	0	ENST00000326873.7:c.291-2A>G		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																															
KMT2C	0	MSKCC	GRCh37	7	151841926	151841926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	18	276	0	ENST00000262189.6:c.14215C>T	p.Gln4739Ter	p.Q4739*	ENST00000262189	NM_170606.2	4739	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0029546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	367	504	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
RB1	0	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	119	146	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga																																																																														
FUBP1	0	MSKCC	GRCh37	1	78435678	78435678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	88	269	0	ENST00000370768.2:c.142G>T	p.Asp48Tyr	p.D48Y	ENST00000370768	NM_003902.3	48	Gat/Tat																																																																														
SESN3	0	MSKCC	GRCh37	11	94908739	94908739	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	331	440	1	ENST00000536441.1:c.1315A>T	p.Thr439Ser	p.T439S	ENST00000536441	NM_144665.3	439	Aca/Tca																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245478	153245478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	138	386	0	ENST00000281708.4:c.1713del	p.Asn572IlefsTer6	p.N572Ifs*6	ENST00000281708	NM_033632.3	571	ggG/gg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81990400	81990400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	156	709	2	ENST00000359376.3:c.3671G>A	p.Arg1224His	p.R1224H	ENST00000359376	NM_002661.3	1224	cGc/cAc																																																																														
TSC1	0	MSKCC	GRCh37	9	135772809	135772809	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	138	654	1	ENST00000298552.3:c.2813+1G>A		p.X938_splice	ENST00000298552	NM_001162426.1	938																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	16	508	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0029552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	20	478	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	209	466	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59857686	59857686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	84	457	0	ENST00000259008.2:c.1871C>T	p.Ser624Leu	p.S624L	ENST00000259008	NM_032043.2	624	tCg/tTg																																																																														
ATM	0	MSKCC	GRCh37	11	108199925	108199925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	135	322	0	ENST00000278616.4:c.7267G>A	p.Glu2423Lys	p.E2423K	ENST00000278616	NM_000051.3	2423	Gaa/Aaa																																																																														
DICER1	0	MSKCC	GRCh37	14	95579559	95579559	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	51	308	0	ENST00000343455.3:c.1910A>T	p.Tyr637Phe	p.Y637F	ENST00000343455	NM_177438.2	637	tAc/tTc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99465526	99465526	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	100	652	0	ENST00000268035.6:c.2351A>T	p.Asn784Ile	p.N784I	ENST00000268035	NM_000875.3	784	aAc/aTc																																																																														
TCF3	0	MSKCC	GRCh37	19	1619170	1619170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	115	805	0	ENST00000344749.5:c.1390G>T	p.Ala464Ser	p.A464S	ENST00000344749	NM_001136139.2	464	Gcc/Tcc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10247785	10247785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	265	852	1	ENST00000340748.4:c.4417C>T	p.Arg1473Cys	p.R1473C	ENST00000340748		1473	Cgt/Tgt																																																																														
RBM10	0	MSKCC	GRCh37	X	47032513	47032529	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCTCCCCGTATAGATC	ATCTCCCCGTATAGATC	-			P-0029559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	61	458	0	ENST00000329236.7:c.202-14_204del		p.X68_splice	ENST00000329236	NM_001204466.1	68																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	68	399	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	149	595	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056560	26056560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	54	212	0	ENST00000343677.2:c.97C>T	p.Arg33Cys	p.R33C	ENST00000343677	NM_005319.3	33	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0029560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	178	713	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
KDM5C	0	MSKCC	GRCh37	X	53223707	53223707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	73	428	1	ENST00000375401.3:c.3652C>T	p.Arg1218Cys	p.R1218C	ENST00000375401	NM_004187.3	1218	Cgc/Tgc																																																																														
DDR2	0	MSKCC	GRCh37	1	162724469	162724469	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	63	523	0	ENST00000367921.3:c.241G>C	p.Asp81His	p.D81H	ENST00000367921	NM_006182.2	81	Gat/Cat																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210453	2210453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	152	686	0	ENST00000398665.3:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000398665	NM_032482.2	354	Gcc/Acc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276307	15276307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	136	681	0	ENST00000263388.2:c.5687C>G	p.Ser1896Cys	p.S1896C	ENST00000263388	NM_000435.2	1896	tCt/tGt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0029561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	85	578	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	191	453	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KDM5A	0	MSKCC	GRCh37	12	432799	432799	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	57	457	0	ENST00000399788.2:c.2117T>G	p.Leu706Arg	p.L706R	ENST00000399788	NM_001042603.1	706	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7579440	7579441	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	AAG			P-0029562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	138	677	0	ENST00000269305.4:c.246_247delinsCTT	p.Ala83PhefsTer66	p.A83Ffs*66	ENST00000269305	NM_001126112.2	82	ccGGcg/ccCTTcg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554409	63554410	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	70	610	0	ENST00000307078.5:c.329dup	p.Trp111LeufsTer30	p.W111Lfs*30	ENST00000307078	NM_004655.3	110	ttc/ttTc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974769	21974769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	44	177	0	ENST00000304494.5:c.58G>C	p.Ala20Pro	p.A20P	ENST00000304494	NM_000077.4	20	Gcg/Ccg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974769	21974769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	44	177	0	ENST00000304494.5:c.58G>C	p.Ala20Pro	p.A20P	ENST00000304494	NM_000077.4	20	Gcg/Ccg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	189	468	0	ENST00000347630.2:c.373T>G	p.Phe125Val	p.F125V	ENST00000347630	NM_001007230.1	125	Ttt/Gtt																																																																														
CTCF	0	MSKCC	GRCh37	16	67663356	67663356	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	212	481	2	ENST00000264010.4:c.1757A>G	p.Glu586Gly	p.E586G	ENST00000264010	NM_006565.3	586	gAa/gGa																																																																														
RAB35	0	MSKCC	GRCh37	12	120554424	120554425	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0029563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	50	174	0	ENST00000229340.5:c.30_31delinsT	p.Lys10AsnfsTer48	p.K10Nfs*48	ENST00000229340	NM_006861.6	10	aaGCtg/aaTtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0029567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	152	181	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	161	305	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692891	89692891	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	245	328	0	ENST00000371953.3:c.375A>C	p.Lys125Asn	p.K125N	ENST00000371953	NM_000314.4	125	aaA/aaC																																																																														
PTEN	0	MSKCC	GRCh37	10	89692800	89692800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	150	193	0	ENST00000371953.3:c.284C>T	p.Pro95Leu	p.P95L	ENST00000371953	NM_000314.4	95	cCa/cTa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0029567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	235	398	0	ENST00000274335.5:c.1746-2A>G		p.X582_splice	ENST00000274335		582																																																																															
ARID1A	0	MSKCC	GRCh37	1	27088795	27088795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	262	503	0	ENST00000324856.7:c.2404C>T	p.Gln802Ter	p.Q802*	ENST00000324856	NM_006015.4	802	Cag/Tag																																																																														
AKT3	0	MSKCC	GRCh37	1	244006467	244006472	+	start_lost,inframe_deletion	Translation_Start_Site	DEL	GCTCAT	GCTCAT	-			P-0029567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1500	240	409	0	ENST00000263826.5:c.1_6del	p.MetSer1_?2	p.MS1_?2	ENST00000263826	NM_005465.4	1	ATGAGC/-																																																																														
SLX4	0	MSKCC	GRCh37	16	3634794	3634794	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182432298		P-0029567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	390	640	0	ENST00000294008.3:c.4715C>T	p.Pro1572Leu	p.P1572L	ENST00000294008	NM_032444.2	1572	cCg/cTg																																																																														
CBFB	0	MSKCC	GRCh37	16	67063632	67063633	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	194	343	0	ENST00000412916.2:c.83dup	p.Tyr29ValfsTer54	p.Y29Vfs*54	ENST00000412916		27	-/A																																																																														
BRD4	0	MSKCC	GRCh37	19	15349904	15349904	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	257	499	0	ENST00000263377.2:c.3748A>G	p.Lys1250Glu	p.K1250E	ENST00000263377	NM_058243.2	1250	Aag/Gag																																																																														
FGF3	0	MSKCC	GRCh37	11	69625281	69625281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35983315		P-0029568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3408	281	759	1	ENST00000334134.2:c.512G>A	p.Arg171His	p.R171H	ENST00000334134	NM_005247.2	171	cGc/cAc																																																																														
DDR2	0	MSKCC	GRCh37	1	162741817	162741817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	103	399	0	ENST00000367921.3:c.1508G>T	p.Cys503Phe	p.C503F	ENST00000367921	NM_006182.2	503	tGc/tTc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351820	89351820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	114	882	0	ENST00000301030.4:c.1130C>G	p.Ser377Cys	p.S377C	ENST00000301030	NM_001256183.1	377	tCc/tGc																																																																														
KIT	0	MSKCC	GRCh37	4	55565885	55565885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	175	528	0	ENST00000288135.5:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000288135	NM_000222.2	237	Gat/Tat																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741711	145741711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	107	693	0	ENST00000428558.2:c.792G>A	p.Trp264Ter	p.W264*	ENST00000428558	NM_004260.3	264	tgG/tgA																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20152079	20152079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	14	244	0	ENST00000379607.5:c.251A>G	p.Tyr84Cys	p.Y84C	ENST00000379607	NM_001412.3	84	tAc/tGc																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	185	591	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
GLI1	0	MSKCC	GRCh37	12	57865216	57865216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	264	893	0	ENST00000228682.2:c.2693T>C	p.Val898Ala	p.V898A	ENST00000228682	NM_005269.2	898	gTg/gCg																																																																														
DICER1	0	MSKCC	GRCh37	14	95574339	95574339	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	155	402	0	ENST00000343455.3:c.2528T>G	p.Leu843Arg	p.L843R	ENST00000343455	NM_177438.2	843	cTt/cGt																																																																														
BAP1	0	MSKCC	GRCh37	3	52442561	52442574	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTTCGCCGGGAC	CCTTTCGCCGGGAC	-			P-0029569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	292	689	0	ENST00000460680.1:c.171_184del	p.Ser58LeufsTer6	p.S58Lfs*6	ENST00000460680	NM_004656.3	57	cgGTCCCGGCGAAAGGtc/cgtc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	104	371	1				ENST00000310581	NM_198253.2																																																																																
JAK3	0	MSKCC	GRCh37	19	17954248	17954248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	368	623	1	ENST00000458235.1:c.361C>T	p.Arg121Cys	p.R121C	ENST00000458235	NM_000215.3	121	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578261	7578265	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGA	TCGGA	-			P-0029575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	388	558	1	ENST00000269305.4:c.584_588del	p.Ile195SerfsTer12	p.I195Sfs*12	ENST00000269305	NM_001126112.2	195	aTCCGA/a																																																																														
NTRK2	0	MSKCC	GRCh37	9	87339155	87339155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	158	382	0	ENST00000277120.3:c.737C>T	p.Thr246Ile	p.T246I	ENST00000277120		246	aCa/aTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	303	610	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105748	27105748	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	116	396	0	ENST00000324856.7:c.5359G>T	p.Glu1787Ter	p.E1787*	ENST00000324856	NM_006015.4	1787	Gag/Tag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	78	252	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212611	36212611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	373	818	1	ENST00000222270.7:c.2362G>T	p.Val788Leu	p.V788L	ENST00000222270	NM_014727.1	788	Gta/Tta																																																																														
CTLA4	0	MSKCC	GRCh37	2	204735354	204735354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	42	225	1	ENST00000302823.3:c.155G>A	p.Gly52Asp	p.G52D	ENST00000302823	NM_005214.4	52	gGc/gAc																																																																														
CDC73	0	MSKCC	GRCh37	1	193107293	193107293	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	49	271	0	ENST00000367435.3:c.502G>T	p.Glu168Ter	p.E168*	ENST00000367435	NM_024529.4	168	Gaa/Taa																																																																														
BIRC3	0	MSKCC	GRCh37	11	102201868	102201868	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	74	440	0	ENST00000263464.3:c.1220G>C	p.Gly407Ala	p.G407A	ENST00000263464	NM_001165.4	407	gGa/gCa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436578	49436578	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	290	621	0	ENST00000301067.7:c.5728G>T	p.Gly1910Ter	p.G1910*	ENST00000301067	NM_003482.3	1910	Gga/Tga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32900414	32900414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	87	345	0	ENST00000380152.3:c.511G>T	p.Val171Leu	p.V171L	ENST00000380152		171	Gtg/Ttg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59821874	59821875	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	50	454	1	ENST00000259008.2:c.2175_2176delinsTA	p.Glu726Lys	p.E726K	ENST00000259008	NM_032043.2	725	gtAGaa/gtTAaa																																																																														
CEBPA	0	MSKCC	GRCh37	19	33793197	33793197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	84	121	0	ENST00000498907.2:c.124C>T	p.Pro42Ser	p.P42S	ENST00000498907	NM_004364.3	42	Cct/Tct																																																																														
INPP4A	0	MSKCC	GRCh37	2	99182580	99182580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	98	438	0	ENST00000074304.5:c.2383C>A	p.Gln795Lys	p.Q795K	ENST00000074304	NM_001134224.1	795	Cag/Aag																																																																														
GATA2	0	MSKCC	GRCh37	3	128204612	128204612	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	160	690	0	ENST00000341105.2:c.829A>T	p.Ser277Cys	p.S277C	ENST00000341105	NM_032638.4	277	Agc/Tgc																																																																														
TET2	0	MSKCC	GRCh37	4	106157044	106157044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	185	501	0	ENST00000380013.4:c.1945C>T	p.Gln649Ter	p.Q649*	ENST00000380013	NM_001127208.2	649	Caa/Taa																																																																														
SMO	0	MSKCC	GRCh37	7	128849189	128849189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	220	495	0	ENST00000249373.3:c.1417G>T	p.Asp473Tyr	p.D473Y	ENST00000249373	NM_005631.4	473	Gac/Tac																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879018	151879018	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	222	540	0	ENST00000262189.6:c.5927A>C	p.Asp1976Ala	p.D1976A	ENST00000262189	NM_170606.2	1976	gAt/gCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	140	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	96	591	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974693	21974693	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	51	396	0	ENST00000304494.5:c.134delG	p.Gly45ValfsTer8	p.G45Vfs*8	ENST00000304494	NM_000077.4	45	gGt/gt																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974693	21974693	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	51	396	0	ENST00000304494.5:c.134delG	p.Gly45ValfsTer8	p.G45Vfs*8	ENST00000304494	NM_000077.4	45	gGt/gt																																																																														
MST1R	0	MSKCC	GRCh37	3	49924891	49924892	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	118	696	0	ENST00000296474.3:c.4051dup	p.Asp1351GlyfsTer20	p.D1351Gfs*20	ENST00000296474	NM_002447.2	1351	gac/gGac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0029583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	215	516	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	255	763	0	ENST00000269305.4:c.404G>C	p.Cys135Ser	p.C135S	ENST00000269305	NM_001126112.2	135	tGc/tCc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257640	19257640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	88	716	0	ENST00000162023.5:c.586A>G	p.Thr196Ala	p.T196A	ENST00000162023		196	Aca/Gca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	57	387	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	57	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	81	688	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	69	458	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
BRAF	0	MSKCC	GRCh37	7	140501260	140501260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	53	515	0	ENST00000288602.6:c.812G>A	p.Arg271His	p.R271H	ENST00000288602	NM_004333.4	271	cGt/cAt																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395746	45395746	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	79	373	1	ENST00000262160.6:c.388C>T	p.Arg130Ter	p.R130*	ENST00000262160	NM_005901.5	130	Cga/Tga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912189	114912189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	68	487	0	ENST00000543371.1:c.1259G>T	p.Arg420Leu	p.R420L	ENST00000543371	NM_001198531.1	420	cGg/cTg																																																																														
APC	0	MSKCC	GRCh37	5	112175350	112175354	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTT	ATTTT	-			P-0029584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	43	222	0	ENST00000257430.4:c.4059_4063del	p.Glu1353AspfsTer20	p.E1353Dfs*20	ENST00000257430	NM_000038.5	1353	gaATTTTct/gact																																																																														
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	271	598	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41268762	41268762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	98	429	0	ENST00000349496.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000349496	NM_001904.3	334	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112157613	112157613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	95	403	1	ENST00000257430.4:c.1333C>T	p.Gln445Ter	p.Q445*	ENST00000257430	NM_000038.5	445	Cag/Tag																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727441	66727441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	197	436	0	ENST00000307102.5:c.157T>C	p.Phe53Leu	p.F53L	ENST00000307102	NM_002755.3	53	Ttt/Ctt																																																																														
EZH2	0	MSKCC	GRCh37	7	148506443	148506443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	51	347	0	ENST00000320356.2:c.2069G>A	p.Arg690His	p.R690H	ENST00000320356	NM_004456.4	690	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112175770	112175771	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	86	273	0	ENST00000257430.4:c.4479_4480del	p.Glu1494LysfsTer19	p.E1494Kfs*19	ENST00000257430	NM_000038.5	1493	acGGaa/acaa																																																																														
SOS1	0	MSKCC	GRCh37	2	39249925	39249925	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	136	597	0	ENST00000402219.2:c.1644T>G	p.Ser548Arg	p.S548R	ENST00000402219	NM_005633.3	548	agT/agG																																																																														
ARID1B	0	MSKCC	GRCh37	6	157405995	157405995	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	86	456	0	ENST00000346085.5:c.2237G>C	p.Ser746Thr	p.S746T	ENST00000346085	NM_020732.3	746	aGc/aCc																																																																														
TP53	0	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1188	75	877	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																																																														
FGF19	0	MSKCC	GRCh37	11	69514221	69514221	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	86	706	0	ENST00000294312.3:c.460T>A	p.Tyr154Asn	p.Y154N	ENST00000294312	NM_005117.2	154	Tac/Aac																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128268652	128268652	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145885264		P-0029587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	81	787	0	ENST00000265960.3:c.1003G>A	p.Val335Ile	p.V335I	ENST00000265960	NM_001006617.1	335	Gtt/Att																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	36	413	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	26	599	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	118	464	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	24	420	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	125	722	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	101	640	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942739	44942739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	27	306	0	ENST00000377967.4:c.3320delC	p.Pro1107LeufsTer13	p.P1107Lfs*13	ENST00000377967	NM_021140.2	1107	Cct/ct																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016559	12016559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	58	309	0	ENST00000353533.5:c.695C>T	p.Pro232Leu	p.P232L	ENST00000353533	NM_003010.3	232	cCt/cTt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176133021	176133021	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	84	382	0	ENST00000367669.3:c.572A>T	p.Glu191Val	p.E191V	ENST00000367669	NM_022457.5	191	gAa/gTa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89337228	89337228	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	122	589	0	ENST00000301030.4:c.7803G>C	p.Met2601Ile	p.M2601I	ENST00000301030	NM_001256183.1	2601	atG/atC																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581197	48581197	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	92	420	0	ENST00000342988.3:c.503del	p.Gly168AspfsTer34	p.G168Dfs*34	ENST00000342988	NM_005359.5	167	gaG/ga																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390211	89390211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	55	307	0	ENST00000336596.2:c.960G>T	p.Met320Ile	p.M320I	ENST00000336596	NM_005233.5	320	atG/atT																																																																														
ESR1	0	MSKCC	GRCh37	6	152415654	152415654	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	105	556	0	ENST00000206249.3:c.1504C>T	p.Gln502Ter	p.Q502*	ENST00000206249	NM_000125.3	502	Cag/Tag																																																																														
RB1	0	MSKCC	GRCh37	13	48878166	48878166	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	454	170	0	ENST00000267163.4:c.118G>T	p.Glu40Ter	p.E40*	ENST00000267163	NM_000321.2	40	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	737	500	4	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
GRIN2A	0	MSKCC	GRCh37	16	9934603	9934603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	221	453	1	ENST00000330684.3:c.1552C>A	p.Arg518Ser	p.R518S	ENST00000330684	NM_001134407.1	518	Cgt/Agt																																																																														
SMYD3	0	MSKCC	GRCh37	1	246027182	246027182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	180	461	0	ENST00000388985.4:c.820G>A	p.Asp274Asn	p.D274N	ENST00000388985		274	Gat/Aat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424489	49424489	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	861	594	2	ENST00000301067.7:c.13734del	p.Phe4579LeufsTer13	p.F4579Lfs*13	ENST00000301067	NM_003482.3	4578	ccC/cc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427562	49427562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	983	475	3	ENST00000301067.7:c.10926G>C	p.Gln3642His	p.Q3642H	ENST00000301067	NM_003482.3	3642	caG/caC																																																																														
BLM	0	MSKCC	GRCh37	15	91346816	91346816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	136	520	3	ENST00000355112.3:c.3424G>T	p.Ala1142Ser	p.A1142S	ENST00000355112	NM_000057.2	1142	Gcc/Tcc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14014213	14014213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	214	264	0	ENST00000311895.7:c.191C>T	p.Thr64Met	p.T64M	ENST00000311895	NM_005236.2	64	aCg/aTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993687	72993687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	338	483	1	ENST00000268489.5:c.358G>T	p.Gly120Trp	p.G120W	ENST00000268489	NM_006885.3	120	Ggg/Tgg																																																																														
SUZ12	0	MSKCC	GRCh37	17	30302650	30302658	+	inframe_deletion	In_Frame_Del	DEL	TTACTCGTT	TTACTCGTT	-			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	207	273	1	ENST00000322652.5:c.741_749del	p.Tyr248_Leu250del	p.Y248_L250del	ENST00000322652	NM_015355.2	247	tcTTACTCGTTg/tcg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59858356	59858356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	203	373	4	ENST00000259008.2:c.1639G>T	p.Asp547Tyr	p.D547Y	ENST00000259008	NM_032043.2	547	Gat/Tat																																																																														
TCF3	0	MSKCC	GRCh37	19	1621043	1621043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	1048	832	0	ENST00000344749.5:c.1017C>G	p.Ile339Met	p.I339M	ENST00000344749	NM_001136139.2	339	atC/atG																																																																														
PBRM1	0	MSKCC	GRCh37	3	52584538	52584538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	353	546	0	ENST00000394830.3:c.4475C>T	p.Pro1492Leu	p.P1492L	ENST00000394830	NM_018313.4	1492	cCa/cTa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920315	134920315	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	365	280	1	ENST00000398015.3:c.2131-1G>T		p.X711_splice	ENST00000398015	NM_004441.4	711																																																																															
FAT1	0	MSKCC	GRCh37	4	187549769	187549769	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	176	388	0	ENST00000441802.2:c.4472A>G	p.Tyr1491Cys	p.Y1491C	ENST00000441802	NM_005245.3	1491	tAc/tGc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8504276	8504276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	936	429	6	ENST00000356435.5:c.1807A>G	p.Arg603Gly	p.R603G	ENST00000356435		603	Aga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	147	384	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	124	341	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	202	523	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	58	301	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
IRF4	0	MSKCC	GRCh37	6	397219	397219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143144957		P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	133	318	0	ENST00000380956.4:c.604G>A	p.Gly202Ser	p.G202S	ENST00000380956	NM_001195286.1	202	Ggc/Agc																																																																														
PALB2	0	MSKCC	GRCh37	16	23637631	23637631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45476495		P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	93	519	0	ENST00000261584.4:c.2674G>A	p.Glu892Lys	p.E892K	ENST00000261584	NM_024675.3	892	Gaa/Aaa																																																																														
PRKCI	0	MSKCC	GRCh37	3	170013720	170013720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	147	365	0	ENST00000295797.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000295797	NM_002740.5	480	cGc/cAc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351211	89351211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	233	528	0	ENST00000301030.4:c.1739C>T	p.Ser580Phe	p.S580F	ENST00000301030	NM_001256183.1	580	tCc/tTc																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073773	8073773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	108	261	0	ENST00000377482.5:c.886C>T	p.Pro296Ser	p.P296S	ENST00000377482	NM_018948.3	296	Cca/Tca																																																																														
PAK7	0	MSKCC	GRCh37	20	9561462	9561462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	133	406	0	ENST00000353224.5:c.320C>T	p.Thr107Ile	p.T107I	ENST00000353224	NM_177990.2	107	aCc/aTc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188950	32188950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	216	651	0	ENST00000375023.3:c.604C>T	p.Pro202Ser	p.P202S	ENST00000375023	NM_004557.3	202	Cca/Tca																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128201190	128201190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	112	469	0	ENST00000265960.3:c.1545G>T	p.Lys515Asn	p.K515N	ENST00000265960	NM_001006617.1	515	aaG/aaT																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0029594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	212	564	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0029594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	325	649	1	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
NSD1	0	MSKCC	GRCh37	5	176638795	176638795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	262	645	0	ENST00000439151.2:c.3395G>A	p.Gly1132Glu	p.G1132E	ENST00000439151	NM_022455.4	1132	gGa/gAa																																																																														
MED12	0	MSKCC	GRCh37	X	70356266	70356301	+	inframe_deletion	In_Frame_Del	DEL	CAGCGGTTGCTGCTCTACCACACACACCTGAGGCCC	CAGCGGTTGCTGCTCTACCACACACACCTGAGGCCC	-			P-0029594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	239	629	0	ENST00000374080.3:c.5162_5197del	p.Gln1721_Pro1732del	p.Q1721_P1732del	ENST00000374080		1721	CAGCGGTTGCTGCTCTACCACACACACCTGAGGCCC/-																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271668	15271668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	268	888	0	ENST00000263388.2:c.6771C>A	p.Ser2257Arg	p.S2257R	ENST00000263388	NM_000435.2	2257	agC/agA																																																																														
LATS1	0	MSKCC	GRCh37	6	150001128	150001128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	128	478	0	ENST00000253339.5:c.2476C>T	p.His826Tyr	p.H826Y	ENST00000253339		826	Cat/Tat																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139405167	139405167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	189	712	0	ENST00000277541.6:c.2678G>A	p.Cys893Tyr	p.C893Y	ENST00000277541	NM_017617.3	893	tGc/tAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	132	435	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	247	683	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CTCF	0	MSKCC	GRCh37	16	67650717	67650717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	108	552	1	ENST00000264010.4:c.1022G>T	p.Arg341Leu	p.R341L	ENST00000264010	NM_006565.3	341	cGt/cTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581256	48581265	+	frameshift_variant	Frame_Shift_Del	DEL	GTAATCGTGC	GTAATCGTGC	-			P-0029597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	63	518	0	ENST00000342988.3:c.560_569del	p.Ser187AsnfsTer12	p.S187Nfs*12	ENST00000342988	NM_005359.5	187	aGTAATCGTGCa/aa																																																																														
STK11	0	MSKCC	GRCh37	19	1218417	1218418	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0029597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	164	586	0	ENST00000326873.7:c.295dup	p.Ile99AsnfsTer64	p.I99Nfs*64	ENST00000326873	NM_000455.4	98	gaa/gAaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	53	366	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0029598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	94	271	0	ENST00000371953.3:c.801+1G>T		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	287	461	0				ENST00000310581	NM_198253.2																																																																																
ARID1B	0	MSKCC	GRCh37	6	157099874	157099898	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCCGCCGCCGGGGCCCCCGGCA	GCCGCCGCCGCCGGGGCCCCCGGCA	-			P-0029602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	305	633	0	ENST00000346085.5:c.813_837del	p.Ala272TrpfsTer89	p.A272Wfs*89	ENST00000346085	NM_020732.3	271	GCCGCCGCCGCCGGGGCCCCCGGCAgc/gc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	79	437	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	38	401	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																														
TP53	0	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0029604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	122	679	0	ENST00000269305.4:c.376T>A	p.Tyr126Asn	p.Y126N	ENST00000269305	NM_001126112.2	126	Tac/Aac																																																																														
FAT1	0	MSKCC	GRCh37	4	187629212	187629213	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0029605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	102	578	0	ENST00000441802.2:c.1769_1770del	p.Thr590SerfsTer5	p.T590Sfs*5	ENST00000441802	NM_005245.3	590	aCT/a																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101904853	101904853	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	53	382	0	ENST00000374994.4:c.841G>C	p.Asp281His	p.D281H	ENST00000374994	NM_004612.2	281	Gat/Cat																																																																														
PTEN	0	MSKCC	GRCh37	10	89692851	89692851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	26	194	0	ENST00000371953.3:c.335T>C	p.Leu112Pro	p.L112P	ENST00000371953	NM_000314.4	112	cTa/cCa																																																																														
MYD88	0	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	9	335	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																														
CBL	0	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	83	260	0	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																															
GNAS	0	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	147	356	0	ENST00000371085.3:c.602G>T	p.Arg201Leu	p.R201L	ENST00000371085	NM_000516.4	201	cGt/cTt																																																																														
UPF1	0	MSKCC	GRCh37	19	18967047	18967047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	85	642	0	ENST00000262803.5:c.1762T>C	p.Ser588Pro	p.S588P	ENST00000262803	NM_002911.3	588	Tcg/Ccg																																																																														
FGF19	0	MSKCC	GRCh37	11	69518446	69518446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	740	326	0	ENST00000294312.3:c.199G>T	p.Val67Phe	p.V67F	ENST00000294312	NM_005117.2	67	Gtc/Ttc																																																																														
ATM	0	MSKCC	GRCh37	11	108117853	108117853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	96	372	0	ENST00000278616.4:c.1064A>T	p.Gln355Leu	p.Q355L	ENST00000278616	NM_000051.3	355	cAg/cTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431486	49431486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	163	756	0	ENST00000301067.7:c.9653G>T	p.Gly3218Val	p.G3218V	ENST00000301067	NM_003482.3	3218	gGg/gTg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56493446	56493446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	56	412	0	ENST00000267101.3:c.2854G>A	p.Glu952Lys	p.E952K	ENST00000267101	NM_001982.3	952	Gag/Aag																																																																														
NF1	0	MSKCC	GRCh37	17	29654826	29654826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	50	327	0	ENST00000358273.4:c.5578C>T	p.Leu1860Phe	p.L1860F	ENST00000358273	NM_001042492.2	1860	Ctt/Ttt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55129911	55129911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	182	590	1	ENST00000257290.5:c.445C>A	p.Pro149Thr	p.P149T	ENST00000257290	NM_006206.4	149	Cct/Act																																																																														
ARID1B	0	MSKCC	GRCh37	6	157222513	157222513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	83	489	1	ENST00000346085.5:c.1780C>T	p.Pro594Ser	p.P594S	ENST00000346085	NM_020732.3	594	Cca/Tca																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522253	157522253	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	232	644	1	ENST00000346085.5:c.4525G>T	p.Glu1509Ter	p.E1509*	ENST00000346085	NM_020732.3	1509	Gag/Tag																																																																														
CARD11	0	MSKCC	GRCh37	7	2946436	2946436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	155	783	2	ENST00000396946.4:c.3301C>T	p.Arg1101Cys	p.R1101C	ENST00000396946	NM_032415.4	1101	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	180	468	0				ENST00000310581	NM_198253.2																																																																																
KDM6A	0	MSKCC	GRCh37	X	44929428	44929429	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	190	364	0	ENST00000377967.4:c.2530dup	p.Leu844ProfsTer2	p.L844Pfs*2	ENST00000377967	NM_021140.2	843	agc/agCc																																																																														
AR	0	MSKCC	GRCh37	X	66905872	66905872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	333	321	0	ENST00000374690.3:c.1789G>A	p.Ala597Thr	p.A597T	ENST00000374690	NM_000044.3	597	Gcc/Acc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	118	289	0	ENST00000371953.3:c.275A>T	p.Asp92Val	p.D92V	ENST00000371953	NM_000314.4	92	gAc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	217	521	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	201	734	2	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
SOX9	0	MSKCC	GRCh37	17	70117669	70117669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	167	684	0	ENST00000245479.2:c.137C>T	p.Thr46Met	p.T46M	ENST00000245479	NM_000346.3	46	aCg/aTg																																																																														
CEBPA	0	MSKCC	GRCh37	19	33793058	33793058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	233	368	0	ENST00000498907.2:c.263A>T	p.Gln88Leu	p.Q88L	ENST00000498907	NM_004364.3	88	cAg/cTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087395	27087396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	146	632	0	ENST00000324856.7:c.1970dup	p.Ser658GlufsTer18	p.S658Efs*18	ENST00000324856	NM_006015.4	657	ctg/cTtg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3777756	3777756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1482	95	990	2	ENST00000262367.5:c.7292C>T	p.Thr2431Met	p.T2431M	ENST00000262367	NM_004380.2	2431	aCg/aTg																																																																														
DDR2	0	MSKCC	GRCh37	1	162745588	162745588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	96	452	2	ENST00000367921.3:c.2003G>T	p.Arg668Leu	p.R668L	ENST00000367921	NM_006182.2	668	cGc/cTc																																																																														
AKT3	0	MSKCC	GRCh37	1	243778454	243778454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	136	346	0	ENST00000263826.5:c.571G>A	p.Ala191Thr	p.A191T	ENST00000263826	NM_005465.4	191	Gca/Aca																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856196	111856196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	59	340	3	ENST00000341259.2:c.247C>T	p.Arg83Trp	p.R83W	ENST00000341259	NM_005475.2	83	Cgg/Tgg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420205	88420205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	50	507	0	ENST00000360948.2:c.2481G>C	p.Leu827Phe	p.L827F	ENST00000360948	NM_001012338.2	827	ttG/ttC																																																																														
MYCN	0	MSKCC	GRCh37	2	16085890	16085890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	191	485	0	ENST00000281043.3:c.1066C>A	p.Pro356Thr	p.P356T	ENST00000281043	NM_005378.4	356	Cca/Aca																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470462	25470462	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	231	648	0	ENST00000264709.3:c.1012G>A	p.Val338Met	p.V338M	ENST00000264709	NM_175629.2	338	Gtg/Atg																																																																														
ALK	0	MSKCC	GRCh37	2	29456524	29456524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	363	625	0	ENST00000389048.3:c.2394C>A	p.Asn798Lys	p.N798K	ENST00000389048	NM_004304.4	798	aaC/aaA																																																																														
XPO1	0	MSKCC	GRCh37	2	61715319	61715319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	222	736	0	ENST00000401558.2:c.2294G>T	p.Arg765Leu	p.R765L	ENST00000401558	NM_003400.3	765	cGa/cTa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99180036	99180036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	388	611	0	ENST00000074304.5:c.1979G>C	p.Ser660Thr	p.S660T	ENST00000074304	NM_001134224.1	660	aGc/aCc																																																																														
ATR	0	MSKCC	GRCh37	3	142215215	142215215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	78	245	1	ENST00000350721.4:c.5886G>T	p.Trp1962Cys	p.W1962C	ENST00000350721	NM_001184.3	1962	tgG/tgT																																																																														
FAT1	0	MSKCC	GRCh37	4	187509760	187509761	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	36	200	0	ENST00000441802.2:c.13752_13753delinsTT	p.Gln4584_His4585delinsHisTyr	p.Q4584_H4585delinsHY	ENST00000441802	NM_005245.3	4584	caGCac/caTTac																																																																														
SDHA	0	MSKCC	GRCh37	5	233619	233619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	43	334	0	ENST00000264932.6:c.923C>T	p.Thr308Met	p.T308M	ENST00000264932	NM_004168.2	308	aCg/aTg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31449511	31449511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	56	297	0	ENST00000344624.3:c.2698C>T	p.Pro900Ser	p.P900S	ENST00000344624		900	Cca/Tca																																																																														
RASA1	0	MSKCC	GRCh37	5	86645169	86645169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	60	294	0	ENST00000274376.6:c.1241G>T	p.Arg414Leu	p.R414L	ENST00000274376	NM_002890.2	414	cGg/cTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151893097	151893097	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	58	298	1	ENST00000262189.6:c.4274-1G>T		p.X1425_splice	ENST00000262189	NM_170606.2	1425																																																																															
PREX2	0	MSKCC	GRCh37	8	69104759	69104759	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs139672596		P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	50	414	1	ENST00000288368.4:c.4603C>T	p.Arg1535Trp	p.R1535W	ENST00000288368	NM_024870.2	1535	Cgg/Tgg																																																																														
JAK2	0	MSKCC	GRCh37	9	5069098	5069099	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	80	448	1	ENST00000381652.3:c.1403_1404delinsTT	p.Lys468Ile	p.K468I	ENST00000381652	NM_004972.3	468	aAG/aTT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499763	8499763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	153	514	0	ENST00000356435.5:c.2206G>T	p.Val736Leu	p.V736L	ENST00000356435		736	Gtg/Ttg																																																																														
TEK	0	MSKCC	GRCh37	9	27190611	27190611	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	65	654	1	ENST00000380036.4:c.1412T>A	p.Phe471Tyr	p.F471Y	ENST00000380036	NM_000459.3	471	tTt/tAt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209627	98209627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	142	450	1	ENST00000331920.6:c.3911G>T	p.Arg1304Met	p.R1304M	ENST00000331920	NM_000264.3	1304	aGg/aTg																																																																														
TRAF2	0	MSKCC	GRCh37	9	139820343	139820343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	66	544	0	ENST00000247668.2:c.1496C>A	p.Thr499Lys	p.T499K	ENST00000247668	NM_021138.3	499	aCa/aAa																																																																														
AMER1	0	MSKCC	GRCh37	X	63412756	63412756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	103	529	0	ENST00000330258.3:c.411G>T	p.Leu137Phe	p.L137F	ENST00000330258	NM_152424.3	137	ttG/ttT																																																																														
AR	0	MSKCC	GRCh37	X	66766414	66766414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	15	146	0	ENST00000374690.3:c.1426G>A	p.Gly476Arg	p.G476R	ENST00000374690	NM_000044.3	476	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	93	535	0				ENST00000310581	NM_198253.2																																																																																
PTEN	0	MSKCC	GRCh37	10	89624275	89624275	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	85	469	0	ENST00000371953.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000371953	NM_000314.4	17	Caa/Taa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9984935	9984935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	110	546	0	ENST00000330684.3:c.1030G>A	p.Asp344Asn	p.D344N	ENST00000330684	NM_001134407.1	344	Gat/Aat																																																																														
SPEN	0	MSKCC	GRCh37	1	16261382	16261382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	119	554	0	ENST00000375759.3:c.8647C>T	p.His2883Tyr	p.H2883Y	ENST00000375759	NM_015001.2	2883	Cat/Tat																																																																														
MPL	0	MSKCC	GRCh37	1	43818343	43818343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	126	654	0	ENST00000372470.3:c.1808C>T	p.Pro603Leu	p.P603L	ENST00000372470	NM_005373.2	603	cCc/cTc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913926	32913926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	79	603	0	ENST00000380152.3:c.5434G>A	p.Glu1812Lys	p.E1812K	ENST00000380152		1812	Gaa/Aaa																																																																														
SPRED1	0	MSKCC	GRCh37	15	38641648	38641648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	88	520	0	ENST00000299084.4:c.608A>G	p.Asp203Gly	p.D203G	ENST00000299084	NM_152594.2	203	gAc/gGc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032237	10032237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	124	655	1	ENST00000330684.3:c.586G>A	p.Val196Met	p.V196M	ENST00000330684	NM_001134407.1	196	Gtg/Atg																																																																														
TP63	0	MSKCC	GRCh37	3	189582040	189582040	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	162	424	0	ENST00000264731.3:c.599A>T	p.Lys200Ile	p.K200I	ENST00000264731	NM_003722.4	200	aAa/aTa																																																																														
TERT	0	MSKCC	GRCh37	5	1294054	1294054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	147	1036	2	ENST00000310581.5:c.947C>T	p.Pro316Leu	p.P316L	ENST00000310581	NM_198253.2	316	cCc/cTc																																																																														
PLK2	0	MSKCC	GRCh37	5	57751585	57751585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	61	237	0	ENST00000274289.3:c.1406G>A	p.Gly469Glu	p.G469E	ENST00000274289	NM_006622.3	469	gGa/gAa																																																																														
BRAF	0	MSKCC	GRCh37	7	140453137	140453138	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	246	426	0	ENST00000288602.6:c.1795_1797dup	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	-/ACA																																																																														
NTRK2	0	MSKCC	GRCh37	9	87635148	87635148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	99	414	0	ENST00000277120.3:c.2200C>T	p.Arg734Cys	p.R734C	ENST00000277120		734	Cgc/Tgc																																																																														
AR	0	MSKCC	GRCh37	X	66905968	66905968	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	59	192	0	ENST00000374690.3:c.1885G>A	p.Ala629Thr	p.A629T	ENST00000374690	NM_000044.3	629	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	97	489	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	139	756	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089574	27089574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	127	647	0	ENST00000324856.7:c.2530C>T	p.Gln844Ter	p.Q844*	ENST00000324856	NM_006015.4	844	Cag/Tag																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032479	12032480	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0029615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	40	349	0	ENST00000353533.5:c.915_916delinsAA	p.Phe305_Pro306delinsLeuThr	p.F305_P306delinsLT	ENST00000353533	NM_003010.3	305	ttTCct/ttAAct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0029617-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	180	736	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029617-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	9	300	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323150	31323150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029617-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			868	134	693	0	ENST00000412585.2:c.839G>A	p.Arg280Lys	p.R280K	ENST00000412585	NM_005514.6	280	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0029622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	456	571	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
IRS1	0	MSKCC	GRCh37	2	227661387	227661387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	371	403	0	ENST00000305123.5:c.2068C>G	p.Pro690Ala	p.P690A	ENST00000305123	NM_005544.2	690	Cct/Gct																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	120	412	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	115	443	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	150	523	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971069	21971069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	51	391	0	ENST00000304494.5:c.289C>G	p.Leu97Val	p.L97V	ENST00000304494	NM_000077.4	97	Ctg/Gtg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971069	21971069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	51	391	0	ENST00000304494.5:c.289C>G	p.Leu97Val	p.L97V	ENST00000304494	NM_000077.4	97	Ctg/Gtg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971069	21971069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	51	391	0	ENST00000304494.5:c.289C>G	p.Leu97Val	p.L97V	ENST00000304494	NM_000077.4	97	Ctg/Gtg																																																																														
FLT1	0	MSKCC	GRCh37	13	28891687	28891687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	67	596	0	ENST00000282397.4:c.3334C>A	p.Arg1112Ser	p.R1112S	ENST00000282397	NM_002019.4	1112	Cgc/Agc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828630	72828630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	84	599	0	ENST00000268489.5:c.7951G>C	p.Glu2651Gln	p.E2651Q	ENST00000268489	NM_006885.3	2651	Gaa/Caa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37863276	37863324	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCAGTCCCGAGACCCACCTGGACATGCTCCGCCACCTCTACCAGGG	CTGCCAGTCCCGAGACCCACCTGGACATGCTCCGCCACCTCTACCAGGG	-			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	124	642	0	ENST00000269571.5:c.114_162del	p.Ser38ArgfsTer38	p.S38Rfs*38	ENST00000269571		36	cCTGCCAGTCCCGAGACCCACCTGGACATGCTCCGCCACCTCTACCAGGGc/cc																																																																														
POLD1	0	MSKCC	GRCh37	19	50909736	50909736	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	96	797	1	ENST00000440232.2:c.1456A>T	p.Lys486Ter	p.K486*	ENST00000440232	NM_002691.3	486	Aag/Tag																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52724289	52724289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	72	536	0	ENST00000322088.6:c.1421G>T	p.Gly474Val	p.G474V	ENST00000322088	NM_014225.5	474	gGg/gTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40733244	40733244	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	65	590	1	ENST00000373198.4:c.3562del	p.Gln1188ArgfsTer17	p.Q1188Rfs*17	ENST00000373198	NM_133170.3	1188	Cag/ag																																																																														
RASA1	0	MSKCC	GRCh37	5	86682652	86682652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	25	293	0	ENST00000274376.6:c.2857A>G	p.Met953Val	p.M953V	ENST00000274376	NM_002890.2	953	Atg/Gtg																																																																														
MET	0	MSKCC	GRCh37	7	116409820	116409820	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	49	305	0	ENST00000397752.3:c.2705A>T	p.Lys902Ile	p.K902I	ENST00000397752	NM_000245.2	902	aAa/aTa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391149	139391149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	80	683	1	ENST00000277541.6:c.7042G>T	p.Gly2348Cys	p.G2348C	ENST00000277541	NM_017617.3	2348	Ggc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	488	697	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
DDR2	0	MSKCC	GRCh37	1	162731167	162731167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	563	440	0	ENST00000367921.3:c.1022G>T	p.Arg341Leu	p.R341L	ENST00000367921	NM_006182.2	341	cGa/cTa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32905132	32905132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	402	509	1	ENST00000380152.3:c.758G>T	p.Ser253Ile	p.S253I	ENST00000380152		253	aGt/aTt																																																																														
RB1	0	MSKCC	GRCh37	13	48955568	48955568	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	332	378	0	ENST00000267163.4:c.1684G>C	p.Ala562Pro	p.A562P	ENST00000267163	NM_000321.2	562	Gca/Cca																																																																														
PTPRS	0	MSKCC	GRCh37	19	5218809	5218809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	543	657	0	ENST00000357368.4:c.3924C>A	p.Asn1308Lys	p.N1308K	ENST00000357368	NM_002850.3	1308	aaC/aaA																																																																														
MEF2B	0	MSKCC	GRCh37	19	19260135	19260135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	516	714	0	ENST00000162023.5:c.158G>T	p.Arg53Leu	p.R53L	ENST00000162023		53	cGc/cTc																																																																														
KIT	0	MSKCC	GRCh37	4	55564503	55564503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	153	463	0	ENST00000288135.5:c.391G>T	p.Asp131Tyr	p.D131Y	ENST00000288135	NM_000222.2	131	Gac/Tac																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526981	31526981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2310	580	675	0	ENST00000344624.3:c.59G>T	p.Arg20Leu	p.R20L	ENST00000344624		20	cGa/cTa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56152461	56152461	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	237	251	0	ENST00000399503.3:c.517T>A	p.Leu173Met	p.L173M	ENST00000399503	NM_005921.1	173	Ttg/Atg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412749	63412749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	330	288	0	ENST00000330258.3:c.418G>T	p.Gly140Cys	p.G140C	ENST00000330258	NM_152424.3	140	Ggc/Tgc																																																																														
RB1	0	MSKCC	GRCh37	13	48947596	48947596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	115	540	0	ENST00000267163.4:c.1183C>T	p.Gln395Ter	p.Q395*	ENST00000267163	NM_000321.2	395	Caa/Taa																																																																														
SESN2	0	MSKCC	GRCh37	1	28600635	28600635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	81	764	0	ENST00000253063.3:c.986G>A	p.Arg329Lys	p.R329K	ENST00000253063	NM_031459.4	329	aGa/aAa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251911	153251911	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	497	600	2	ENST00000281708.4:c.1095G>A	p.Trp365Ter	p.W365*	ENST00000281708	NM_033632.3	365	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	147	664	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	181	620	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10283806	10283806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1207	87	652	3	ENST00000340748.4:c.680C>T	p.Ser227Leu	p.S227L	ENST00000340748		227	tCa/tTa																																																																														
FUBP1	0	MSKCC	GRCh37	1	78414967	78414967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	311	471	3	ENST00000370768.2:c.1799C>A	p.Pro600Gln	p.P600Q	ENST00000370768	NM_003902.3	600	cCg/cAg																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724607	112724607	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	100	621	0	ENST00000369452.4:c.491C>G	p.Ser164Cys	p.S164C	ENST00000369452	NM_007373.3	164	tCt/tGt																																																																														
KDM5A	0	MSKCC	GRCh37	12	464379	464379	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	118	680	0	ENST00000399788.2:c.815C>G	p.Ser272Ter	p.S272*	ENST00000399788	NM_001042603.1	272	tCa/tGa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37866632	37866632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	134	688	1	ENST00000269571.5:c.799C>T	p.His267Tyr	p.H267Y	ENST00000269571		267	Cac/Tac																																																																														
ASXL2	0	MSKCC	GRCh37	2	25991722	25991722	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	93	440	0	ENST00000435504.4:c.520C>T	p.Gln174Ter	p.Q174*	ENST00000435504		174	Cag/Tag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096539	178096539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	62	367	0	ENST00000397062.3:c.792C>G	p.Asn264Lys	p.N264K	ENST00000397062	NM_006164.4	264	aaC/aaG																																																																														
MYD88	0	MSKCC	GRCh37	3	38180171	38180171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	83	440	0	ENST00000396334.3:c.19G>A	p.Glu7Lys	p.E7K	ENST00000396334	NM_002468.4	7	Gag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187629328	187629328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	150	680	2	ENST00000441802.2:c.1654G>A	p.Glu552Lys	p.E552K	ENST00000441802	NM_005245.3	552	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	457	591	0				ENST00000310581	NM_198253.2																																																																																
HIST1H3C	0	MSKCC	GRCh37	6	26045882	26045882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	194	573	1	ENST00000540144.1:c.244G>A	p.Asp82Asn	p.D82N	ENST00000540144	NM_003531.2	82	Gac/Aac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8331669	8331669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	96	526	0	ENST00000356435.5:c.5447C>A	p.Ser1816Tyr	p.S1816Y	ENST00000356435		1816	tCc/tAc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44920576	44920576	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	63	469	0	ENST00000377967.4:c.1337C>G	p.Ser446Cys	p.S446C	ENST00000377967	NM_021140.2	446	tCt/tGt																																																																														
RBM10	0	MSKCC	GRCh37	X	47045482	47045482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1758	161	847	1	ENST00000329236.7:c.2215C>T	p.Arg739Cys	p.R739C	ENST00000329236	NM_001204466.1	739	Cgt/Tgt																																																																														
GATA1	0	MSKCC	GRCh37	X	48651663	48651663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1978	183	924	0	ENST00000376670.3:c.829C>G	p.Pro277Ala	p.P277A	ENST00000376670	NM_002049.3	277	Ccc/Gcc																																																																														
GATA1	0	MSKCC	GRCh37	X	48652236	48652236	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1696	142	753	1	ENST00000376670.3:c.907C>T	p.Gln303Ter	p.Q303*	ENST00000376670	NM_002049.3	303	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	133	532	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0029637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	42	348	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
RBM10	0	MSKCC	GRCh37	X	47028898	47028898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0029637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	41	489	0	ENST00000329236.7:c.201+1G>T		p.X67_splice	ENST00000329236	NM_001204466.1	67																																																																															
E2F3	0	MSKCC	GRCh37	6	20481530	20481530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	53	340	1	ENST00000346618.3:c.599G>T	p.Gly200Val	p.G200V	ENST00000346618	NM_001949.4	200	gGg/gTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714396	40714396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	60	528	1	ENST00000373198.4:c.4001G>T	p.Arg1334Ile	p.R1334I	ENST00000373198	NM_133170.3	1334	aGa/aTa																																																																														
IL7R	0	MSKCC	GRCh37	5	35857096	35857096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	28	334	0	ENST00000303115.3:c.17C>G	p.Thr6Arg	p.T6R	ENST00000303115	NM_002185.3	6	aCa/aGa																																																																														
VHL	0	MSKCC	GRCh37	3	10183755	10183757	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	126	975	0	ENST00000256474.2:c.227_229delTCT	p.Phe76del	p.F76del	ENST00000256474	NM_000551.3	75	aTCTtc/atc																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439564	51439564	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	37	341	0	ENST00000262662.1:c.130-1G>T		p.X44_splice	ENST00000262662		44																																																																															
KMT2A	0	MSKCC	GRCh37	11	118374653	118374658	+	inframe_deletion	In_Frame_Del	DEL	ATACTA	ATACTA	-			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	58	545	0	ENST00000534358.1:c.8046_8051del	p.Leu2682_Tyr2684delinsPhe	p.L2682_Y2684delinsF	ENST00000534358	NM_005933.3	2682	ttATACTAt/ttt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487930	56487930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	101	799	0	ENST00000267101.3:c.1661C>T	p.Pro554Leu	p.P554L	ENST00000267101	NM_001982.3	554	cCg/cTg																																																																														
RB1	0	MSKCC	GRCh37	13	48878068	48878069	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	42	286	1	ENST00000267163.4:c.25dup	p.Thr9AsnfsTer22	p.T9Nfs*22	ENST00000267163	NM_000321.2	7	cga/cgAa																																																																														
PALB2	79728	MSKCC	GRCh37	16	23632769	23632770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	70	691	0	ENST00000261584.4:c.3026dup	p.Glu1010Ter	p.E1010*	ENST00000261584	NM_024675.3	1009	cct/ccCt																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39542579	39542579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200002230		P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	76	620	0	ENST00000262039.4:c.383C>T	p.Ser128Leu	p.S128L	ENST00000262039	NM_002647.2	128	tCg/tTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10262128	10262128	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	101	869	0	ENST00000340748.4:c.2163del	p.Lys722ArgfsTer55	p.K722Rfs*55	ENST00000340748		721	ggG/gg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210908	36210908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	121	989	3	ENST00000222270.7:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000222270	NM_014727.1	220	cGg/cAg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36229086	36229110	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGGAAGGTGGGCTCCCAGTGGCTG	TGGGAAGGTGGGCTCCCAGTGGCTG	-			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	85	818	1	ENST00000222270.7:c.7872+1_7872+25del		p.X2624_splice	ENST00000222270	NM_014727.1	2624																																																																															
SETD2	0	MSKCC	GRCh37	3	47162078	47162078	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	38	390	1	ENST00000409792.3:c.4048del	p.Ser1350GlnfsTer23	p.S1350Qfs*23	ENST00000409792	NM_014159.6	1350	Tca/ca																																																																														
PBRM1	0	MSKCC	GRCh37	3	52637540	52637540	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	37	539	0	ENST00000394830.3:c.2776del	p.Arg926GlufsTer82	p.R926Efs*82	ENST00000394830	NM_018313.4	926	Aga/ga																																																																														
RASA1	0	MSKCC	GRCh37	5	86672218	86672218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	32	397	2	ENST00000274376.6:c.2020C>T	p.Arg674Cys	p.R674C	ENST00000274376	NM_002890.2	674	Cgc/Tgc																																																																														
NSD1	0	MSKCC	GRCh37	5	176562686	176562686	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	74	806	0	ENST00000439151.2:c.582T>G	p.Asn194Lys	p.N194K	ENST00000439151	NM_022455.4	194	aaT/aaG																																																																														
FLT4	0	MSKCC	GRCh37	5	180048554	180048554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	97	723	2	ENST00000261937.6:c.2008C>A	p.Leu670Met	p.L670M	ENST00000261937	NM_182925.4	670	Ctg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	434	683	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	505	421	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
CHEK2	0	MSKCC	GRCh37	22	29092966	29092966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	93	519	0	ENST00000328354.6:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000328354	NM_007194.3	340	Gaa/Aaa																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	497	578	1	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200018596		P-0029643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	651	425	0	ENST00000263967.3:c.344G>T	p.Arg115Leu	p.R115L	ENST00000263967	NM_006218.2	115	cGa/cTa																																																																														
EZH2	0	MSKCC	GRCh37	7	148515049	148515049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	76	526	0	ENST00000320356.2:c.1160G>A	p.Arg387Lys	p.R387K	ENST00000320356	NM_004456.4	387	aGg/aAg																																																																														
DICER1	0	MSKCC	GRCh37	14	95574431	95574431	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0029643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	29	217	0	ENST00000343455.3:c.2437-1G>C		p.X813_splice	ENST00000343455	NM_177438.2	813																																																																															
TSC2	0	MSKCC	GRCh37	16	2110723	2110723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	170	956	0	ENST00000219476.3:c.1028C>G	p.Thr343Ser	p.T343S	ENST00000219476	NM_000548.3	343	aCc/aGc																																																																														
TSC2	0	MSKCC	GRCh37	16	2130294	2130294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	130	861	1	ENST00000219476.3:c.3526C>A	p.Pro1176Thr	p.P1176T	ENST00000219476	NM_000548.3	1176	Cct/Act																																																																														
CALR	0	MSKCC	GRCh37	19	13050932	13050961	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GTGCTGATCAACAAGGACATCCGTTGCAAG	GTGCTGATCAACAAGGACATCCGTTGCAAG	-			P-0029643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	48	486	0	ENST00000316448.5:c.466_492+3del		p.VLINKDIRCKdel	ENST00000316448	NM_004343.3	155	GTGCTGATCAACAAGGACATCCGTTGCAAG/-																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182662914	182662914	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	92	592	0	ENST00000292782.4:c.748C>G	p.Gln250Glu	p.Q250E	ENST00000292782	NM_020640.2	250	Caa/Gaa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099098	157099098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	18	233	0	ENST00000346085.5:c.35G>A	p.Gly12Asp	p.G12D	ENST00000346085	NM_020732.3	12	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	59	370	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	200	906	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	20	393	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	37	674	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
ERG	0	MSKCC	GRCh37	21	39775467	39775467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	191	656	3	ENST00000288319.7:c.553G>A	p.Ala185Thr	p.A185T	ENST00000288319	NM_182918.3	185	Gcc/Acc																																																																														
TERT	0	MSKCC	GRCh37	5	1279516	1279516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	220	1013	3	ENST00000310581.5:c.2020G>A	p.Gly674Ser	p.G674S	ENST00000310581	NM_198253.2	674	Ggc/Agc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	243	610	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779253	3779253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	47	496	0	ENST00000262367.5:c.5795C>T	p.Thr1932Met	p.T1932M	ENST00000262367	NM_004380.2	1932	aCg/aTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828024	72828024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200701402		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	64	930	2	ENST00000268489.5:c.8557G>A	p.Ala2853Thr	p.A2853T	ENST00000268489	NM_006885.3	2853	Gca/Aca																																																																														
ERF	0	MSKCC	GRCh37	19	42754484	42754484	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	68	721	3	ENST00000222329.4:c.256C>T	p.Arg86Cys	p.R86C	ENST00000222329	NM_006494.2	86	Cgc/Tgc																																																																														
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	146	764	2	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827474	72827474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	94	682	0	ENST00000268489.5:c.9107G>A	p.Arg3036Gln	p.R3036Q	ENST00000268489	NM_006885.3	3036	cGg/cAg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16097786	16097786	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201037902		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	32	708	2	ENST00000268712.3:c.98G>A	p.Arg33His	p.R33H	ENST00000268712	NM_006311.3	33	cGc/cAc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798968	45798968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	80	828	1	ENST00000372115.3:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000372115	NM_001048171.1	112	cGg/cAg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36933540	36933540	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3917997		P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	243	972	0	ENST00000361632.4:c.1747C>T	p.Arg583Cys	p.R583C	ENST00000361632		583	Cgt/Tgt																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699223	117699224	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	158	490	0	ENST00000369458.3:c.417dup	p.Asn140GlufsTer3	p.N140Efs*3	ENST00000369458	NM_024626.3	139	-/G																																																																														
PARP1	0	MSKCC	GRCh37	1	226576422	226576430	+	inframe_deletion	In_Frame_Del	DEL	CATCCACTC	CATCCACTC	-			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	44	625	0	ENST00000366794.5:c.644_652del	p.Gly215_Asp217del	p.G215_D217del	ENST00000366794	NM_001618.3	215	gGAGTGGATGaa/gaa																																																																														
CBL	0	MSKCC	GRCh37	11	119155685	119155685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	44	464	2	ENST00000264033.4:c.1438C>T	p.Arg480Trp	p.R480W	ENST00000264033	NM_005188.3	480	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427612	49427612	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	135	550	0	ENST00000301067.7:c.10876del	p.Arg3626GlyfsTer32	p.R3626Gfs*32	ENST00000301067	NM_003482.3	3626	Cgg/gg																																																																														
FLT1	0	MSKCC	GRCh37	13	29041756	29041756	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	126	343	0	ENST00000282397.4:c.65-2A>G		p.X22_splice	ENST00000282397	NM_002019.4	22																																																																															
FOXA1	0	MSKCC	GRCh37	14	38060611	38060611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	251	1168	0	ENST00000250448.2:c.1378T>C	p.Tyr460His	p.Y460H	ENST00000250448	NM_004496.3	460	Tac/Cac																																																																														
PALB2	0	MSKCC	GRCh37	16	23647433	23647433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	202	572	1	ENST00000261584.4:c.434G>A	p.Ser145Asn	p.S145N	ENST00000261584	NM_024675.3	145	aGc/aAc																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627769	14627769	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	41	698	0	ENST00000254322.2:c.301A>G	p.Met101Val	p.M101V	ENST00000254322	NM_006145.1	101	Atg/Gtg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024605	31024605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	60	567	0	ENST00000375687.4:c.4090G>A	p.Val1364Ile	p.V1364I	ENST00000375687	NM_015338.5	1364	Gtt/Att																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026859	71026859	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	120	326	0	ENST00000318789.4:c.1363A>G	p.Asn455Asp	p.N455D	ENST00000318789	NM_032682.5	455	Aac/Gac																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526816	31526816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	74	875	1	ENST00000344624.3:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000344624		75	cGa/cAa																																																																														
RXRA	0	MSKCC	GRCh37	9	137293517	137293517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	125	1184	0	ENST00000481739.1:c.68C>T	p.Thr23Met	p.T23M	ENST00000481739	NM_002957.4	23	aCg/aTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16262097	16262097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	91	333	1	ENST00000375759.3:c.9362G>A	p.Arg3121Gln	p.R3121Q	ENST00000375759	NM_015001.2	3121	cGg/cAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101472	27101472	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	208	863	0	ENST00000324856.7:c.4754T>C	p.Val1585Ala	p.V1585A	ENST00000324856	NM_006015.4	1585	gTa/gCa																																																																														
CSF3R	0	MSKCC	GRCh37	1	36939219	36939219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	190	751	1	ENST00000361632.4:c.490C>T	p.Arg164Trp	p.R164W	ENST00000361632		164	Cgg/Tgg																																																																														
MPL	0	MSKCC	GRCh37	1	43804304	43804304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	164	638	2	ENST00000372470.3:c.304C>T	p.Arg102Cys	p.R102C	ENST00000372470	NM_005373.2	102	Cgt/Tgt																																																																														
RAD54L	0	MSKCC	GRCh37	1	46743758	46743760	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	205	771	0	ENST00000371975.4:c.2050_2052delTGT	p.Cys684del	p.C684del	ENST00000371975	NM_003579.3	683	cGTTgt/cgt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458436	120458436	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	144	594	2	ENST00000256646.2:c.6909delC	p.Ile2304LeufsTer2	p.I2304Lfs*2	ENST00000256646	NM_024408.3	2303	ccC/cc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120468424	120468424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	153	635	0	ENST00000256646.2:c.4015G>A	p.Gly1339Arg	p.G1339R	ENST00000256646	NM_024408.3	1339	Ggg/Agg																																																																														
MCL1	0	MSKCC	GRCh37	1	150549868	150549868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	100	448	0	ENST00000369026.2:c.1036G>A	p.Ala346Thr	p.A346T	ENST00000369026	NM_021960.4	346	Gca/Aca																																																																														
RFWD2	0	MSKCC	GRCh37	1	175956113	175956113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	61	573	0	ENST00000367669.3:c.2099T>C	p.Val700Ala	p.V700A	ENST00000367669	NM_022457.5	700	gTt/gCt																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612921	228612921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	169	538	0	ENST00000366696.1:c.106G>A	p.Val36Met	p.V36M	ENST00000366696	NM_003493.2	36	Gtg/Atg																																																																														
GATA3	0	MSKCC	GRCh37	10	8097781	8097781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	236	899	0	ENST00000346208.3:c.163G>A	p.Gly55Ser	p.G55S	ENST00000346208		55	Ggt/Agt																																																																														
ARID5B	0	MSKCC	GRCh37	10	63662003	63662003	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	99	426	0	ENST00000279873.7:c.107T>C	p.Leu36Ser	p.L36S	ENST00000279873	NM_032199.2	36	tTg/tCg																																																																														
TET1	0	MSKCC	GRCh37	10	70446284	70446284	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	167	660	2	ENST00000373644.4:c.5230del	p.Arg1744GlufsTer18	p.R1744Efs*18	ENST00000373644	NM_030625.2	1742	Aaa/aa																																																																														
PTEN	0	MSKCC	GRCh37	10	89690802	89690802	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	23	353	0	ENST00000371953.3:c.210-1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
PTEN	0	MSKCC	GRCh37	10	89690814	89690814	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	30	373	0	ENST00000371953.3:c.221G>C	p.Arg74Thr	p.R74T	ENST00000371953	NM_000314.4	74	aGa/aCa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692979	89692979	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	94	550	0	ENST00000371953.3:c.463T>A	p.Tyr155Asn	p.Y155N	ENST00000371953	NM_000314.4	155	Tat/Aat																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67200491	67200491	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	207	690	0	ENST00000312629.5:c.685T>G	p.Phe229Val	p.F229V	ENST00000312629	NM_003952.2	229	Ttc/Gtc																																																																														
FGF19	0	MSKCC	GRCh37	11	69518084	69518084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	248	875	0	ENST00000294312.3:c.281G>A	p.Gly94Asp	p.G94D	ENST00000294312	NM_005117.2	94	gGc/gAc																																																																														
FGF4	0	MSKCC	GRCh37	11	69588088	69588088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	146	558	0	ENST00000168712.1:c.610C>A	p.Pro204Thr	p.P204T	ENST00000168712	NM_002007.2	204	Ccc/Acc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	169	441	9	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18649053	18649053	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	53	498	0	ENST00000266497.5:c.2728A>G	p.Asn910Asp	p.N910D	ENST00000266497		910	Aat/Gat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	78	601	0	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
ARID2	0	MSKCC	GRCh37	12	46242662	46242662	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	37	447	1	ENST00000334344.6:c.1624C>T	p.Arg542Ter	p.R542*	ENST00000334344	NM_152641.2	542	Cga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432206	49432206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	276	892	0	ENST00000301067.7:c.8933C>A	p.Pro2978His	p.P2978H	ENST00000301067	NM_003482.3	2978	cCt/cAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49439750	49439750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs200119692		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	146	642	0	ENST00000301067.7:c.4694C>T	p.Ala1565Val	p.A1565V	ENST00000301067	NM_003482.3	1565	gCg/gTg																																																																														
FLT3	0	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	146	602	0	ENST00000241453.7:c.2955_2956delTC	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32915054	32915054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	73	611	1	ENST00000380152.3:c.6566del	p.Asn2189ThrfsTer2	p.N2189Tfs*2	ENST00000380152		2188	Aaa/aa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30135384	30135384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	91	477	0	ENST00000331968.5:c.434G>A	p.Arg145His	p.R145H	ENST00000331968	NM_002742.2	145	cGt/cAt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987024	36987024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	166	699	0	ENST00000354822.5:c.665A>G	p.Glu222Gly	p.E222G	ENST00000354822	NM_001079668.2	222	gAg/gGg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246533	105246533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	159	697	1	ENST00000349310.3:c.67C>T	p.Arg23Trp	p.R23W	ENST00000349310	NM_001014432.1	23	Cgg/Tgg																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643392	38643392	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	45	612	0	ENST00000299084.4:c.867del	p.Lys289AsnfsTer14	p.K289Nfs*14	ENST00000299084	NM_152594.2	288	Aaa/aa																																																																														
BLM	0	MSKCC	GRCh37	15	91333913	91333913	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	131	523	1	ENST00000355112.3:c.2858T>C	p.Ile953Thr	p.I953T	ENST00000355112	NM_000057.2	953	aTt/aCt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99442809	99442809	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	163	663	0	ENST00000268035.6:c.1211delA	p.Asn404ThrfsTer6	p.N404Tfs*6	ENST00000268035	NM_000875.3	402	ctA/ct																																																																														
AXIN1	0	MSKCC	GRCh37	16	343595	343595	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	238	861	1	ENST00000262320.3:c.2079del	p.Thr694ProfsTer11	p.T694Pfs*11	ENST00000262320	NM_003502.3	693	ccC/cc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	181	680	3	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																														
TSC2	0	MSKCC	GRCh37	16	2136333	2136333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	242	954	1	ENST00000219476.3:c.4802G>A	p.Gly1601Asp	p.G1601D	ENST00000219476	NM_000548.3	1601	gGt/gAt																																																																														
TSC2	0	MSKCC	GRCh37	16	2137913	2137913	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150558493		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	231	876	0	ENST00000219476.3:c.5039G>A	p.Cys1680Tyr	p.C1680Y	ENST00000219476	NM_000548.3	1680	tGc/tAc																																																																														
SLX4	0	MSKCC	GRCh37	16	3644532	3644532	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	282	1009	0	ENST00000294008.3:c.2082G>C	p.Gln694His	p.Q694H	ENST00000294008	NM_032444.2	694	caG/caC																																																																														
CREBBP	0	MSKCC	GRCh37	16	3808876	3808876	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	139	550	0	ENST00000262367.5:c.3348T>A	p.Asp1116Glu	p.D1116E	ENST00000262367	NM_004380.2	1116	gaT/gaA																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	88	443	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274042	10274042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	234	848	0	ENST00000330684.3:c.227G>A	p.Arg76His	p.R76H	ENST00000330684	NM_001134407.1	76	cGc/cAc																																																																														
SOCS1	0	MSKCC	GRCh37	16	11349160	11349160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	110	332	0	ENST00000332029.2:c.176G>A	p.Arg59His	p.R59H	ENST00000332029	NM_003745.1	59	cGt/cAt																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	73	517	0	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																														
CTCF	0	MSKCC	GRCh37	16	67660536	67660536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	142	566	1	ENST00000264010.4:c.1436G>A	p.Arg479His	p.R479H	ENST00000264010	NM_006565.3	479	cGc/cAc																																																																														
CTCF	0	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	144	614	1	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829578	72829578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	142	578	1	ENST00000268489.5:c.7003C>A	p.Leu2335Met	p.L2335M	ENST00000268489	NM_006885.3	2335	Ctg/Atg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993776	72993776	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200056605		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	191	540	0	ENST00000268489.5:c.269G>A	p.Ser90Asn	p.S90N	ENST00000268489	NM_006885.3	90	aGc/aAc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81927400	81927400	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	198	665	0	ENST00000359376.3:c.1072+1G>A		p.X358_splice	ENST00000359376	NM_002661.3	358																																																																															
ANKRD11	0	MSKCC	GRCh37	16	89347474	89347474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	149	660	2	ENST00000301030.4:c.5476C>T	p.Pro1826Ser	p.P1826S	ENST00000301030	NM_001256183.1	1826	Cca/Tca																																																																														
FANCA	0	MSKCC	GRCh37	16	89874775	89874775	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	116	535	0	ENST00000389301.3:c.523A>G	p.Ser175Gly	p.S175G	ENST00000389301	NM_000135.2	175	Agt/Ggt																																																																														
GPS2	0	MSKCC	GRCh37	17	7216536	7216536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	122	579	0	ENST00000380728.2:c.799G>A	p.Asp267Asn	p.D267N	ENST00000380728		267	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	273	1011	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7979014	7979014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	153	637	1	ENST00000319144.4:c.1553C>T	p.Thr518Ile	p.T518I	ENST00000319144	NM_001139.2	518	aCc/aTc																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	12016635	12016636	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	97	375	0	ENST00000353533.5:c.772_773del	p.Ile258CysfsTer9	p.I258Cfs*9	ENST00000353533	NM_003010.3	257	tcTAtt/tctt																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	131	792	7	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
STAT5B	0	MSKCC	GRCh37	17	40376873	40376873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	151	627	0	ENST00000293328.3:c.299G>A	p.Arg100His	p.R100H	ENST00000293328	NM_012448.3	100	cGc/cAc																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804235	46804235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	171	739	0	ENST00000290295.7:c.772C>A	p.Arg258Ser	p.R258S	ENST00000290295	NM_006361.5	258	Cgc/Agc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	201	768	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59926603	59926603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	53	501	0	ENST00000259008.2:c.394del	p.Thr132ProfsTer25	p.T132Pfs*25	ENST00000259008	NM_032043.2	132	Acc/cc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78935279	78935279	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	206	807	0	ENST00000306801.3:c.3691A>G	p.Ser1231Gly	p.S1231G	ENST00000306801	NM_020761.2	1231	Agc/Ggc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231449	5231449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	224	922	2	ENST00000357368.4:c.2027del	p.Pro676ArgfsTer134	p.P676Rfs*134	ENST00000357368	NM_002850.3	676	cCg/cg																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14629036	14629036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	175	579	1	ENST00000254322.2:c.126G>T	p.Glu42Asp	p.E42D	ENST00000254322	NM_006145.1	42	gaG/gaT																																																																														
CIC	0	MSKCC	GRCh37	19	42794551	42794551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	236	993	0	ENST00000575354.2:c.1631C>T	p.Ala544Val	p.A544V	ENST00000575354	NM_015125.3	544	gCc/gTc																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	120	421	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
BBC3	0	MSKCC	GRCh37	19	47725018	47725019	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	220	955	0	ENST00000449228.1:c.725dupG	p.Arg243GlnfsTer7	p.R243Qfs*7	ENST00000449228	NM_001127240.2	242	ggc/ggGc																																																																														
POLD1	0	MSKCC	GRCh37	19	50912806	50912806	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	194	821	0	ENST00000440232.2:c.2041del	p.Leu681SerfsTer13	p.L681Sfs*13	ENST00000440232	NM_002691.3	679	gaC/ga																																																																														
EPAS1	0	MSKCC	GRCh37	2	46611684	46611684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	222	871	0	ENST00000263734.3:c.2498C>T	p.Ser833Phe	p.S833F	ENST00000263734	NM_001430.4	833	tCc/tTc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99136555	99136555	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	207	814	0	ENST00000074304.5:c.44del	p.Arg15LeufsTer32	p.R15Lfs*32	ENST00000074304	NM_001134224.1	15	cGt/ct																																																																														
ERCC3	0	MSKCC	GRCh37	2	128046263	128046263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	160	594	0	ENST00000285398.2:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000285398	NM_000122.1	334	Cgt/Tgt																																																																														
PAK7	0	MSKCC	GRCh37	20	9561521	9561521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	125	582	0	ENST00000353224.5:c.261G>T	p.Glu87Asp	p.E87D	ENST00000353224	NM_177990.2	87	gaG/gaT																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022374	31022374	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	88	342	0	ENST00000375687.4:c.1859del	p.Arg620LeufsTer83	p.R620Lfs*83	ENST00000375687	NM_015338.5	620	cGt/ct																																																																														
PTPRT	0	MSKCC	GRCh37	20	40789999	40789999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	51	530	0	ENST00000373198.4:c.2732A>G	p.Glu911Gly	p.E911G	ENST00000373198	NM_133170.3	911	gAa/gGa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46281743	46281743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	154	715	0	ENST00000371998.3:c.4190G>A	p.Gly1397Asp	p.G1397D	ENST00000371998		1397	gGc/gAc																																																																														
NF2	0	MSKCC	GRCh37	22	30074295	30074295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	95	527	0	ENST00000338641.4:c.1557G>A	p.Met519Ile	p.M519I	ENST00000338641	NM_000268.3	519	atG/atA																																																																														
EP300	0	MSKCC	GRCh37	22	41573318	41573318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	209	821	2	ENST00000263253.7:c.5603C>T	p.Thr1868Met	p.T1868M	ENST00000263253	NM_001429.3	1868	aCg/aTg																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664989	138664989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	90	375	0	ENST00000330315.3:c.576del	p.Lys193SerfsTer78	p.K193Sfs*78	ENST00000330315	NM_023067.3	192	ccC/cc																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665170	138665170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	251	885	2	ENST00000330315.3:c.395C>T	p.Pro132Leu	p.P132L	ENST00000330315	NM_023067.3	132	cCg/cTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928078	178928080	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	79	568	0	ENST00000263967.3:c.1359_1361delAGA	p.Glu453del	p.E453del	ENST00000263967	NM_006218.2	452	ttAGAa/tta																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182681667	182681667	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	60	378	0	ENST00000292782.4:c.389+2T>C		p.X130_splice	ENST00000292782	NM_020640.2	130																																																																															
RICTOR	0	MSKCC	GRCh37	5	38954898	38954898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	35	357	0	ENST00000357387.3:c.2675G>A	p.Gly892Asp	p.G892D	ENST00000357387	NM_152756.3	892	gGc/gAc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177683	56177683	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	106	366	0	ENST00000399503.3:c.2656C>T	p.Gln886Ter	p.Q886*	ENST00000399503	NM_005921.1	886	Cag/Tag																																																																														
PLK2	0	MSKCC	GRCh37	5	57754554	57754554	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	55	396	0	ENST00000274289.3:c.493del	p.Arg165GlyfsTer7	p.R165Gfs*7	ENST00000274289	NM_006622.3	165	Agg/gg																																																																														
APC	0	MSKCC	GRCh37	5	112175392	112175392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	48	303	0	ENST00000257430.4:c.4101G>T	p.Gln1367His	p.Q1367H	ENST00000257430	NM_000038.5	1367	caG/caT																																																																														
APC	0	MSKCC	GRCh37	5	112175525	112175525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	95	397	0	ENST00000257430.4:c.4234G>A	p.Gly1412Arg	p.G1412R	ENST00000257430	NM_000038.5	1412	Gga/Aga																																																																														
IRF4	0	MSKCC	GRCh37	6	401582	401582	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	184	520	0	ENST00000380956.4:c.908del	p.Asn303ThrfsTer6	p.N303Tfs*6	ENST00000380956	NM_001195286.1	302	Aaa/aa																																																																														
E2F3	0	MSKCC	GRCh37	6	20486919	20486919	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	55	368	0	ENST00000346618.3:c.885-1C>T		p.X295_splice	ENST00000346618	NM_001949.4	295																																																																															
HIST1H3B	0	MSKCC	GRCh37	6	26032218	26032218	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	71	279	0	ENST00000244661.2:c.71A>T	p.Lys24Met	p.K24M	ENST00000244661	NM_003537.3	24	aAg/aTg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911045	29911045	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	225	999	0	ENST00000376809.5:c.344G>A	p.Gly115Asp	p.G115D	ENST00000376809	NM_002116.7	115	gGt/gAt																																																																														
CCND3	0	MSKCC	GRCh37	6	41903836	41903836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	149	539	0	ENST00000372991.4:c.721C>T	p.Arg241Trp	p.R241W	ENST00000372991	NM_001760.3	241	Cgg/Tgg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120889	94120889	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	61	401	0	ENST00000369303.4:c.163-1G>C		p.X55_splice	ENST00000369303	NM_004440.3	55																																																																															
SESN1	0	MSKCC	GRCh37	6	109308826	109308826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	56	318	0	ENST00000436639.2:c.1577T>C	p.Val526Ala	p.V526A	ENST00000436639	NM_014454.2	526	gTt/gCt																																																																														
SESN1	0	MSKCC	GRCh37	6	109322606	109322606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	108	726	2	ENST00000436639.2:c.431C>T	p.Thr144Met	p.T144M	ENST00000436639	NM_014454.2	144	aCg/aTg																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138195980	138195980	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	61	154	0	ENST00000237289.4:c.296-2A>G		p.X99_splice	ENST00000237289	NM_001270507.1	99																																																																															
ARID1B	0	MSKCC	GRCh37	6	157505503	157505503	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	89	405	0	ENST00000346085.5:c.3488del	p.Pro1163ArgfsTer48	p.P1163Rfs*48	ENST00000346085	NM_020732.3	1162	Ccc/cc																																																																														
PMS2	0	MSKCC	GRCh37	7	6035204	6035207	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	53	557	1	ENST00000265849.7:c.861_864delACAG	p.Arg287SerfsTer19	p.R287Sfs*19	ENST00000265849	NM_000535.5	287	agACAG/ag																																																																														
ETV1	0	MSKCC	GRCh37	7	13946143	13946143	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	95	720	0	ENST00000405192.2:c.953del	p.Leu318TrpfsTer2	p.L318Wfs*2	ENST00000405192	NM_001163147.1	318	tTg/tg																																																																														
INHBA	0	MSKCC	GRCh37	7	41739962	41739962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	126	565	0	ENST00000242208.4:c.11T>C	p.Leu4Pro	p.L4P	ENST00000242208	NM_002192.2	4	cTt/cCt																																																																														
FGFR1	0	MSKCC	GRCh37	8	38277182	38277182	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	200	732	0	ENST00000425967.3:c.1246T>G	p.Phe416Val	p.F416V	ENST00000425967	NM_001174067.1	416	Ttc/Gtc																																																																														
NBN	0	MSKCC	GRCh37	8	90967527	90967527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	41	365	0	ENST00000265433.3:c.1381C>T	p.Pro461Ser	p.P461S	ENST00000265433	NM_002485.4	461	Ccg/Tcg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971104	21971104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	168	496	0	ENST00000304494.5:c.254C>T	p.Ala85Val	p.A85V	ENST00000304494	NM_000077.4	85	gCt/gTt																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971104	21971104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	168	496	0	ENST00000304494.5:c.254C>T	p.Ala85Val	p.A85V	ENST00000304494	NM_000077.4	85	gCt/gTt																																																																														
KLF4	0	MSKCC	GRCh37	9	110250127	110250127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	187	818	1	ENST00000374672.4:c.548C>T	p.Ala183Val	p.A183V	ENST00000374672	NM_004235.4	183	gCt/gTt																																																																														
KLF4	0	MSKCC	GRCh37	9	110251245	110251245	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	210	729	2	ENST00000374672.4:c.92A>T	p.Glu31Val	p.E31V	ENST00000374672	NM_004235.4	31	gAg/gTg																																																																														
PPP6C	0	MSKCC	GRCh37	9	127912079	127912079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	25	422	0	ENST00000373547.4:c.791G>A	p.Arg264His	p.R264H	ENST00000373547	NM_002721.4	264	cGt/cAt																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915960	127915960	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	115	522	0	ENST00000373547.4:c.521A>T	p.Asp174Val	p.D174V	ENST00000373547	NM_002721.4	174	gAt/gTt																																																																														
TSC1	0	MSKCC	GRCh37	9	135772614	135772615	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	135	561	0	ENST00000298552.3:c.2931dup	p.Leu978ThrfsTer2	p.L978Tfs*2	ENST00000298552	NM_001162426.1	977	-/A																																																																														
TSC1	0	MSKCC	GRCh37	9	135782722	135782722	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	71	571	0	ENST00000298552.3:c.1299del	p.His433GlnfsTer7	p.H433Qfs*7	ENST00000298552	NM_001162426.1	433	caC/ca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391338	139391338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61751489		P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	255	1055	0	ENST00000277541.6:c.6853G>A	p.Val2285Ile	p.V2285I	ENST00000277541	NM_017617.3	2285	Gtc/Atc																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20153947	20153947	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	61	571	1	ENST00000379607.5:c.113T>C	p.Val38Ala	p.V38A	ENST00000379607	NM_001412.3	38	gTa/gCa																																																																														
BCOR	0	MSKCC	GRCh37	X	39921553	39921553	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	214	848	0	ENST00000378444.4:c.4267C>T	p.Gln1423Ter	p.Q1423*	ENST00000378444	NM_001123385.1	1423	Cag/Tag																																																																														
BCOR	0	MSKCC	GRCh37	X	39932474	39932474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	228	860	0	ENST00000378444.4:c.2125G>T	p.Gly709Cys	p.G709C	ENST00000378444	NM_001123385.1	709	Ggc/Tgc																																																																														
ARAF	0	MSKCC	GRCh37	X	47426301	47426301	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	191	827	0	ENST00000377045.4:c.718A>C	p.Ser240Arg	p.S240R	ENST00000377045	NM_001654.4	240	Agc/Cgc																																																																														
AR	0	MSKCC	GRCh37	X	66943553	66943554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	103	491	0	ENST00000374690.3:c.2637dup	p.Asp880Ter	p.D880*	ENST00000374690	NM_000044.3	878	act/acTt																																																																														
ATRX	0	MSKCC	GRCh37	X	76938089	76938090	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	82	598	1	ENST00000373344.5:c.2658_2659del	p.Glu886AspfsTer10	p.E886Dfs*10	ENST00000373344	NM_000489.3	886	gaGAct/gact																																																																														
STAG2	0	MSKCC	GRCh37	X	123224762	123224763	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	112	642	0	ENST00000218089.9:c.3531_3532del	p.Arg1177SerfsTer7	p.R1177Sfs*7	ENST00000218089	NM_001042749.1	1176	GAg/g																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950775	38950775	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	32	283	0	ENST00000357387.3:c.3175A>T	p.Thr1059Ser	p.T1059S	ENST00000357387	NM_152756.3	1059	Aca/Tca																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188298	32188298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	232	848	0	ENST00000375023.3:c.1043G>T	p.Gly348Val	p.G348V	ENST00000375023	NM_004557.3	348	gGc/gTc																																																																														
RNF43	0	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	213	704	7	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	34	558	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	62	850	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713750	30713750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	30	474	0	ENST00000359013.4:c.1150G>C	p.Ala384Pro	p.A384P	ENST00000359013	NM_001024847.2	384	Gct/Cct																																																																														
AXL	0	MSKCC	GRCh37	19	41727136	41727136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	46	697	0	ENST00000301178.4:c.394T>C	p.Tyr132His	p.Y132H	ENST00000301178	NM_021913.4	132	Tat/Cat																																																																														
BCOR	0	MSKCC	GRCh37	X	39921598	39921598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	47	343	0	ENST00000378444.4:c.4222G>A	p.Asp1408Asn	p.D1408N	ENST00000378444	NM_001123385.1	1408	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	60	465	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1202	112	737	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	61	384	0	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	61	384	0	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66189861	66189861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	63	413	1	ENST00000273854.3:c.3085C>T	p.Gln1029Ter	p.Q1029*	ENST00000273854	NM_004439.5	1029	Cag/Tag																																																																														
HGF	0	MSKCC	GRCh37	7	81336606	81336606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	52	400	0	ENST00000222390.5:c.1616G>A	p.Arg539Gln	p.R539Q	ENST00000222390	NM_000601.4	539	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	168	346	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0029656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	290	593	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71943304	71943304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	140	573	0	ENST00000298229.2:c.1636G>A	p.Val546Ile	p.V546I	ENST00000298229	NM_001567.3	546	Gtc/Atc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0029659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	10	59	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																																																														
IRS2	0	MSKCC	GRCh37	13	110436297	110436305	+	inframe_deletion	In_Frame_Del	DEL	CGGCGGCGG	CGGCGGCGG	-			P-0029660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	51	135	0	ENST00000375856.3:c.2096_2104delCCGCCGCCG	p.Ala699_Ala701del	p.A699_A701del	ENST00000375856	NM_003749.2	699	gCCGCCGCCGtg/gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	389	693	1	ENST00000269305.4:c.309C>A	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taA																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11143966	11143966	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	103	375	0	ENST00000344626.4:c.3547G>A	p.Asp1183Asn	p.D1183N	ENST00000344626	NM_003072.3	1183	Gac/Aac																																																																														
CD79A	0	MSKCC	GRCh37	19	42383185	42383185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	183	569	1	ENST00000221972.3:c.205G>A	p.Val69Ile	p.V69I	ENST00000221972	NM_021601.3	69	Gtc/Atc																																																																														
AKT3	0	MSKCC	GRCh37	1	243736346	243736346	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	70	319	0	ENST00000263826.5:c.701T>C	p.Phe234Ser	p.F234S	ENST00000263826	NM_005465.4	234	tTt/tCt																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41748318	41748318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	129	659	0	ENST00000226382.2:c.451G>A	p.Ala151Thr	p.A151T	ENST00000226382	NM_003924.3	151	Gcc/Acc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180568	94180568	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	695	783	0	ENST00000323929.3:c.1600G>T	p.Glu534Ter	p.E534*	ENST00000323929	NM_005591.3	534	Gag/Tag																																																																														
KMT2A	0	MSKCC	GRCh37	11	118348821	118348821	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	556	556	0	ENST00000534358.1:c.3474T>A	p.Cys1158Ter	p.C1158*	ENST00000534358	NM_005933.3	1158	tgT/tgA																																																																														
KRAS	0	MSKCC	GRCh37	12	25398283	25398284	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	278	806	2	ENST00000256078.4:c.35_36delinsAA	p.Gly12Glu	p.G12E	ENST00000256078	NM_033360.2	12	gGT/gAA																																																																														
SMAD2	0	MSKCC	GRCh37	18	45396851	45396851	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	304	665	0	ENST00000262160.6:c.321A>T	p.Gln107His	p.Q107H	ENST00000262160	NM_005901.5	107	caA/caT																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	418	853	2	ENST00000335508.6:c.1998G>T	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaT																																																																														
FLT4	0	MSKCC	GRCh37	5	180046728	180046728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1510	572	1483	0	ENST00000261937.6:c.2584G>T	p.Ala862Ser	p.A862S	ENST00000261937	NM_182925.4	862	Gcc/Tcc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120318	94120318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	173	395	0	ENST00000369303.4:c.733G>C	p.Ala245Pro	p.A245P	ENST00000369303	NM_004440.3	245	Gcc/Ccc																																																																														
BTK	0	MSKCC	GRCh37	X	100626618	100626618	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	A			P-0029663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	319	753	0	ENST00000308731.7:c.309+3G>T		p.X103_splice	ENST00000308731	NM_000061.2	103																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0029665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	59	670	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0029665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	59	1069	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48586286	48586286	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0029665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	34	674	0	ENST00000342988.3:c.955+1del		p.A319fs	ENST00000342988	NM_005359.5	319	Gct/ct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	120	519	0				ENST00000310581	NM_198253.2																																																																																
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0029668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	142	869	2	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
NF1	0	MSKCC	GRCh37	17	29652890	29652890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	78	439	0	ENST00000358273.4:c.4888A>C	p.Thr1630Pro	p.T1630P	ENST00000358273	NM_001042492.2	1630	Act/Cct																																																																														
MSI2	0	MSKCC	GRCh37	17	55754355	55754355	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	129	889	0	ENST00000284073.2:c.953T>G	p.Leu318Trp	p.L318W	ENST00000284073	NM_138962.2	318	tTg/tGg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49418436	49418436	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	117	776	0	ENST00000301067.7:c.15977T>G	p.Leu5326Arg	p.L5326R	ENST00000301067	NM_003482.3	5326	cTt/cGt																																																																														
FLT3	0	MSKCC	GRCh37	13	28602329	28602329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	68	503	0	ENST00000241453.7:c.2039C>A	p.Ala680Glu	p.A680E	ENST00000241453	NM_004119.2	680	gCg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	125	483	2	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																														
RET	0	MSKCC	GRCh37	10	43596053	43596053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	106	570	1	ENST00000355710.3:c.220G>T	p.Gly74Cys	p.G74C	ENST00000355710	NM_020975.4	74	Ggc/Tgc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18524158	18524158	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	29	441	0	ENST00000266497.5:c.1670T>G	p.Met557Arg	p.M557R	ENST00000266497		557	aTg/aGg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49448140	49448140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	84	563	0	ENST00000301067.7:c.460G>T	p.Gly154Cys	p.G154C	ENST00000301067	NM_003482.3	154	Ggc/Tgc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55155211	55155211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	115	482	0	ENST00000257290.5:c.2810C>A	p.Pro937Gln	p.P937Q	ENST00000257290	NM_006206.4	937	cCg/cAg																																																																														
TET2	0	MSKCC	GRCh37	4	106156606	106156606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	83	376	0	ENST00000380013.4:c.1507G>A	p.Glu503Lys	p.E503K	ENST00000380013	NM_001127208.2	503	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	357	483	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	97	585	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16258619	16258619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	80	480	0	ENST00000375759.3:c.5884G>A	p.Glu1962Lys	p.E1962K	ENST00000375759	NM_015001.2	1962	Gaa/Aaa																																																																														
CSDE1	0	MSKCC	GRCh37	1	115267844	115267844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	87	498	0	ENST00000438362.2:c.1889C>T	p.Ser630Leu	p.S630L	ENST00000438362	NM_001242891.1	630	tCa/tTa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	100	520	0	ENST00000327367.4:c.278G>C	p.Arg93Pro	p.R93P	ENST00000327367	NM_005902.3	93	cGa/cCa																																																																														
CYLD	0	MSKCC	GRCh37	16	50785636	50785636	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	107	520	0	ENST00000398568.2:c.626A>G	p.Asp209Gly	p.D209G	ENST00000398568	NM_001042412.1	209	gAc/gGc																																																																														
ERF	0	MSKCC	GRCh37	19	42752972	42752972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	95	618	0	ENST00000222329.4:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000222329	NM_006494.2	431	tCg/tTg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178097218	178097218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	107	497	0	ENST00000397062.3:c.496G>A	p.Glu166Lys	p.E166K	ENST00000397062	NM_006164.4	166	Gaa/Aaa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566709	212566709	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	63	275	0	ENST00000342788.4:c.1472G>C	p.Arg491Thr	p.R491T	ENST00000342788	NM_005235.2	491	aGa/aCa																																																																														
ERG	0	MSKCC	GRCh37	21	39775433	39775433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	94	373	0	ENST00000288319.7:c.587G>A	p.Arg196Lys	p.R196K	ENST00000288319	NM_182918.3	196	aGa/aAa																																																																														
BCOR	0	MSKCC	GRCh37	X	39933409	39933409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	300	222	1	ENST00000378444.4:c.1190C>T	p.Pro397Leu	p.P397L	ENST00000378444	NM_001123385.1	397	cCg/cTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16259525	16259531	+	stop_gained	Nonsense_Mutation	ONP	GAGACAG	GAGACAG	TAGACAA			P-0029685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	90	414	1	ENST00000375759.3:c.6790_6796delinsTAGACAA	p.Glu2264_Asp2266delinsTer	p.E2264_D2266delins*	ENST00000375759	NM_015001.2	2264	GAGACAGat/TAGACAAat																																																																														
MTOR	0	MSKCC	GRCh37	1	11264672	11264672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	55	548	1	ENST00000361445.4:c.3890C>T	p.Ser1297Leu	p.S1297L	ENST00000361445	NM_004958.3	1297	tCg/tTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16237635	16237635	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	104	447	0	ENST00000375759.3:c.1082A>C	p.Lys361Thr	p.K361T	ENST00000375759	NM_015001.2	361	aAa/aCa																																																																														
SPEN	0	MSKCC	GRCh37	1	16242692	16242692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	85	575	0	ENST00000375759.3:c.1313G>T	p.Arg438Ile	p.R438I	ENST00000375759	NM_015001.2	438	aGa/aTa																																																																														
SPEN	0	MSKCC	GRCh37	1	16256435	16256435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199763346		P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	89	537	0	ENST00000375759.3:c.3700G>A	p.Asp1234Asn	p.D1234N	ENST00000375759	NM_015001.2	1234	Gat/Aat																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	65	476	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46521540	46521540	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	104	539	0	ENST00000262741.5:c.868G>T	p.Glu290Ter	p.E290*	ENST00000262741	NM_003629.3	290	Gaa/Taa																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46527650	46527650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	92	421	0	ENST00000262741.5:c.715G>T	p.Glu239Ter	p.E239*	ENST00000262741	NM_003629.3	239	Gaa/Taa																																																																														
JAK1	0	MSKCC	GRCh37	1	65301842	65301842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	44	303	1	ENST00000342505.4:c.3197C>A	p.Ser1066Tyr	p.S1066Y	ENST00000342505	NM_002227.2	1066	tCt/tAt																																																																														
JAK1	0	MSKCC	GRCh37	1	65335121	65335121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	128	538	0	ENST00000342505.4:c.520C>T	p.Arg174Ter	p.R174*	ENST00000342505	NM_002227.2	174	Cga/Tga																																																																														
NRAS	0	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	94	536	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
CSDE1	0	MSKCC	GRCh37	1	115284182	115284182	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	68	515	0	ENST00000438362.2:c.104A>G	p.Lys35Arg	p.K35R	ENST00000438362	NM_001242891.1	35	aAa/aGa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120508124	120508124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	65	460	0	ENST00000256646.2:c.1633G>A	p.Ala545Thr	p.A545T	ENST00000256646	NM_024408.3	545	Gca/Aca																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120510194	120510194	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199565938		P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	60	360	0	ENST00000256646.2:c.1315G>A	p.Ala439Thr	p.A439T	ENST00000256646	NM_024408.3	439	Gcc/Acc																																																																														
DDR2	0	MSKCC	GRCh37	1	162725511	162725511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	98	471	0	ENST00000367921.3:c.623C>T	p.Ser208Phe	p.S208F	ENST00000367921	NM_006182.2	208	tCc/tTc																																																																														
DDR2	0	MSKCC	GRCh37	1	162746018	162746018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	61	364	0	ENST00000367921.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000367921	NM_006182.2	714	cGa/cAa																																																																														
DDR2	0	MSKCC	GRCh37	1	162748503	162748503	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201041695		P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	70	322	0	ENST00000367921.3:c.2417G>A	p.Arg806Gln	p.R806Q	ENST00000367921	NM_006182.2	806	cGa/cAa																																																																														
RFWD2	0	MSKCC	GRCh37	1	175914300	175914300	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	71	426	0	ENST00000367669.3:c.2185G>T	p.Glu729Ter	p.E729*	ENST00000367669	NM_022457.5	729	Gaa/Taa																																																																														
PARP1	0	MSKCC	GRCh37	1	226579905	226579905	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	87	522	0	ENST00000366794.5:c.397G>T	p.Glu133Ter	p.E133*	ENST00000366794	NM_001618.3	133	Gaa/Taa																																																																														
AKT3	0	MSKCC	GRCh37	1	243716179	243716179	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	34	550	0	ENST00000263826.5:c.1015A>G	p.Met339Val	p.M339V	ENST00000263826	NM_005465.4	339	Atg/Gtg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63661997	63661997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	53	371	0	ENST00000279873.7:c.101G>T	p.Arg34Ile	p.R34I	ENST00000279873	NM_032199.2	34	aGa/aTa																																																																														
TET1	0	MSKCC	GRCh37	10	70332415	70332415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	91	534	0	ENST00000373644.4:c.320G>A	p.Arg107Gln	p.R107Q	ENST00000373644	NM_030625.2	107	cGa/cAa																																																																														
TET1	0	MSKCC	GRCh37	10	70333555	70333555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150689919		P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	85	418	0	ENST00000373644.4:c.1460C>T	p.Ser487Leu	p.S487L	ENST00000373644	NM_030625.2	487	tCa/tTa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	104	544	1	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	108	445	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94201025	94201025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	70	376	0	ENST00000323929.3:c.1052G>A	p.Arg351His	p.R351H	ENST00000323929	NM_005591.3	351	cGt/cAt																																																																														
ATM	0	MSKCC	GRCh37	11	108122662	108122662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	91	507	0	ENST00000278616.4:c.1706G>A	p.Ser569Asn	p.S569N	ENST00000278616	NM_000051.3	569	aGc/aAc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344108	118344108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	77	387	1	ENST00000534358.1:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000534358	NM_005933.3	745	cGa/cAa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374901	118374901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	67	392	0	ENST00000534358.1:c.8294G>A	p.Gly2765Glu	p.G2765E	ENST00000534358	NM_005933.3	2765	gGg/gAg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435490	18435490	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	30	260	0	ENST00000266497.5:c.475G>T	p.Glu159Ter	p.E159*	ENST00000266497		159	Gaa/Taa																																																																														
ARID2	0	MSKCC	GRCh37	12	46230538	46230538	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	62	336	2	ENST00000334344.6:c.787G>T	p.Glu263Ter	p.E263*	ENST00000334344	NM_152641.2	263	Gaa/Taa																																																																														
ARID2	0	MSKCC	GRCh37	12	46242710	46242710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	80	409	0	ENST00000334344.6:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000334344	NM_152641.2	558	Cgt/Tgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435183	49435183	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	61	343	0	ENST00000301067.7:c.6370A>T	p.Ile2124Phe	p.I2124F	ENST00000301067	NM_003482.3	2124	Att/Ttt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443806	49443806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	104	579	0	ENST00000301067.7:c.3565C>T	p.Arg1189Cys	p.R1189C	ENST00000301067	NM_003482.3	1189	Cgt/Tgt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482336	56482336	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	85	478	0	ENST00000267101.3:c.884T>C	p.Val295Ala	p.V295A	ENST00000267101	NM_001982.3	295	gTg/gCg																																																																														
GLI1	0	MSKCC	GRCh37	12	57861997	57861997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	51	368	0	ENST00000228682.2:c.1298A>G	p.Glu433Gly	p.E433G	ENST00000228682	NM_005269.2	433	gAg/gGg																																																																														
PTPN11	0	MSKCC	GRCh37	12	112893859	112893859	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	75	446	0	ENST00000351677.2:c.748G>T	p.Glu250Ter	p.E250*	ENST00000351677	NM_002834.3	250	Gaa/Taa																																																																														
PTPN11	0	MSKCC	GRCh37	12	112910820	112910820	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	120	467	0	ENST00000351677.2:c.829A>C	p.Asn277His	p.N277H	ENST00000351677	NM_002834.3	277	Aat/Cat																																																																														
TBX3	0	MSKCC	GRCh37	12	115117340	115117340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	67	438	0	ENST00000257566.3:c.834C>A	p.Phe278Leu	p.F278L	ENST00000257566	NM_016569.3	278	ttC/ttA																																																																														
POLE	0	MSKCC	GRCh37	12	133212572	133212572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	73	515	0	ENST00000320574.5:c.5717C>A	p.Ser1906Tyr	p.S1906Y	ENST00000320574	NM_006231.2	1906	tCt/tAt																																																																														
POLE	0	MSKCC	GRCh37	12	133250213	133250213	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	79	520	0	ENST00000320574.5:c.1307C>G	p.Pro436Arg	p.P436R	ENST00000320574	NM_006231.2	436	cCc/cGc																																																																														
POLE	0	MSKCC	GRCh37	12	133253197	133253197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	127	543	0	ENST00000320574.5:c.844C>A	p.Pro282Thr	p.P282T	ENST00000320574	NM_006231.2	282	Ccc/Acc																																																																														
FLT3	0	MSKCC	GRCh37	13	28623637	28623637	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	68	494	0	ENST00000241453.7:c.920G>T	p.Arg307Ile	p.R307I	ENST00000241453	NM_004119.2	307	aGa/aTa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910943	32910943	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	95	408	0	ENST00000380152.3:c.2451G>T	p.Lys817Asn	p.K817N	ENST00000380152		817	aaG/aaT																																																																														
DIS3	0	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	48	282	0	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103527907	103527907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	53	384	0	ENST00000355739.4:c.3215G>T	p.Arg1072Ile	p.R1072I	ENST00000355739	NM_000123.3	1072	aGa/aTa																																																																														
TSHR	0	MSKCC	GRCh37	14	81609899	81609899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	37	277	0	ENST00000298171.2:c.1497C>A	p.Phe499Leu	p.F499L	ENST00000298171	NM_000369.2	499	ttC/ttA																																																																														
DICER1	0	MSKCC	GRCh37	14	95599700	95599700	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	47	378	0	ENST00000343455.3:c.96G>A	p.Trp32Ter	p.W32*	ENST00000343455	NM_177438.2	32	tgG/tgA																																																																														
AKT1	0	MSKCC	GRCh37	14	105240310	105240310	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	67	569	0	ENST00000349310.3:c.641A>G	p.Lys214Arg	p.K214R	ENST00000349310	NM_001014432.1	214	aAg/aGg																																																																														
MGA	0	MSKCC	GRCh37	15	42000058	42000058	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	42	463	0	ENST00000219905.7:c.2320+1G>A		p.X774_splice	ENST00000219905	NM_001164273.1	774																																																																															
TP53BP1	0	MSKCC	GRCh37	15	43749297	43749297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	115	556	0	ENST00000382044.4:c.1509G>T	p.Lys503Asn	p.K503N	ENST00000382044	NM_001141980.1	503	aaG/aaT																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43784496	43784496	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	74	448	0	ENST00000382044.4:c.178G>T	p.Glu60Ter	p.E60*	ENST00000382044	NM_001141980.1	60	Gaa/Taa																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	83	434	2	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																																																														
NTRK3	0	MSKCC	GRCh37	15	88670452	88670452	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143617169		P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	38	302	1	ENST00000360948.2:c.1234G>A	p.Glu412Lys	p.E412K	ENST00000360948	NM_001012338.2	412	Gaa/Aaa																																																																														
BLM	0	MSKCC	GRCh37	15	91358483	91358483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	73	546	0	ENST00000355112.3:c.4228C>A	p.Leu1410Ile	p.L1410I	ENST00000355112	NM_000057.2	1410	Ctt/Att																																																																														
CREBBP	0	MSKCC	GRCh37	16	3801803	3801803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	74	426	0	ENST00000262367.5:c.3703C>A	p.His1235Asn	p.H1235N	ENST00000262367	NM_004380.2	1235	Cat/Aat																																																																														
CBFB	0	MSKCC	GRCh37	16	67116170	67116170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	105	516	1	ENST00000412916.2:c.454G>A	p.Glu152Lys	p.E152K	ENST00000412916		152	Gaa/Aaa																																																																														
BRIP1	0	MSKCC	GRCh37	17	59858343	59858343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	41	409	0	ENST00000259008.2:c.1652C>T	p.Ala551Val	p.A551V	ENST00000259008	NM_032043.2	551	gCg/gTg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45377669	45377669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	94	353	0	ENST00000262160.6:c.760C>T	p.Leu254Phe	p.L254F	ENST00000262160	NM_005901.5	254	Ctt/Ttt																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627677	14627677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	99	466	0	ENST00000254322.2:c.393C>A	p.Phe131Leu	p.F131L	ENST00000254322	NM_006145.1	131	ttC/ttA																																																																														
ASXL2	0	MSKCC	GRCh37	2	26029172	26029172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	76	419	0	ENST00000435504.4:c.178C>T	p.Leu60Phe	p.L60F	ENST00000435504		60	Ctt/Ttt																																																																														
CENPA	0	MSKCC	GRCh37	2	27015651	27015651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	83	523	1	ENST00000335756.4:c.238C>T	p.Arg80Cys	p.R80C	ENST00000335756	NM_001809.3	80	Cgt/Tgt																																																																														
ALK	0	MSKCC	GRCh37	2	29541235	29541235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	127	505	0	ENST00000389048.3:c.1582G>A	p.Ala528Thr	p.A528T	ENST00000389048	NM_004304.4	528	Gct/Act																																																																														
SOS1	0	MSKCC	GRCh37	2	39222281	39222281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	41	464	0	ENST00000402219.2:c.3329C>T	p.Ser1110Leu	p.S1110L	ENST00000402219	NM_005633.3	1110	tCg/tTg																																																																														
MSH6	0	MSKCC	GRCh37	2	48033753	48033753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	77	344	0	ENST00000234420.5:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000234420	NM_000179.2	1322	Gaa/Taa																																																																														
ACVR1	0	MSKCC	GRCh37	2	158630699	158630699	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	23	276	0	ENST00000263640.3:c.544G>A	p.Asp182Asn	p.D182N	ENST00000263640	NM_001105.4	182	Gat/Aat																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095644	178095644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	71	456	0	ENST00000397062.3:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000397062	NM_006164.4	563	Gaa/Aaa																																																																														
PMS1	0	MSKCC	GRCh37	2	190660526	190660526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	26	286	0	ENST00000441310.2:c.164G>A	p.Arg55Gln	p.R55Q	ENST00000441310	NM_000534.4	55	cGa/cAa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198270162	198270162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	95	363	0	ENST00000335508.6:c.1274G>A	p.Arg425Gln	p.R425Q	ENST00000335508	NM_012433.2	425	cGa/cAa																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	34	227	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212495220	212495220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	59	454	2	ENST00000342788.4:c.2046G>T	p.Lys682Asn	p.K682N	ENST00000342788	NM_005235.2	682	aaG/aaT																																																																														
PTPRT	0	MSKCC	GRCh37	20	41400170	41400170	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	91	462	1	ENST00000373198.4:c.589C>T	p.Arg197Ter	p.R197*	ENST00000373198	NM_133170.3	197	Cga/Tga																																																																														
EP300	0	MSKCC	GRCh37	22	41523642	41523642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	102	580	2	ENST00000263253.7:c.1058G>A	p.Arg353His	p.R353H	ENST00000263253	NM_001429.3	353	cGc/cAc																																																																														
EP300	0	MSKCC	GRCh37	22	41537115	41537115	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	82	472	0	ENST00000263253.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000263253	NM_001429.3	648	Cga/Tga																																																																														
MLH1	0	MSKCC	GRCh37	3	37050355	37050355	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	83	501	0	ENST00000231790.2:c.504T>G	p.Asn168Lys	p.N168K	ENST00000231790	NM_000249.3	168	aaT/aaG																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41277233	41277233	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	40	299	0	ENST00000349496.5:c.1702G>T	p.Glu568Ter	p.E568*	ENST00000349496	NM_001904.3	568	Gaa/Taa																																																																														
SETD2	0	MSKCC	GRCh37	3	47164885	47164885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	17	252	0	ENST00000409792.3:c.1241G>T	p.Arg414Ile	p.R414I	ENST00000409792	NM_014159.6	414	aGa/aTa																																																																														
MST1R	0	MSKCC	GRCh37	3	49933243	49933243	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	41	608	0	ENST00000296474.3:c.2867G>T	p.Ser956Ile	p.S956I	ENST00000296474	NM_002447.2	956	aGc/aTc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	80	504	1	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																														
MITF	0	MSKCC	GRCh37	3	70014163	70014163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	116	550	0	ENST00000352241.4:c.1327G>A	p.Asp443Asn	p.D443N	ENST00000352241	NM_198159.2	443	Gat/Aat																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114551	73114551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	37	271	0	ENST00000356692.5:c.932C>A	p.Ser311Tyr	p.S311Y	ENST00000356692		311	tCt/tAt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89457258	89457258	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	59	486	0	ENST00000336596.2:c.1739G>T	p.Arg580Ile	p.R580I	ENST00000336596	NM_005233.5	580	aGa/aTa																																																																														
GSK3B	0	MSKCC	GRCh37	3	119666143	119666143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	95	451	0	ENST00000316626.5:c.338G>A	p.Arg113His	p.R113H	ENST00000316626		113	cGt/cAt																																																																														
ATR	0	MSKCC	GRCh37	3	142180887	142180887	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	68	373	1	ENST00000350721.4:c.7087C>T	p.Arg2363Ter	p.R2363*	ENST00000350721	NM_001184.3	2363	Cga/Tga																																																																														
ATR	0	MSKCC	GRCh37	3	142243002	142243002	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	53	370	0	ENST00000350721.4:c.3985G>T	p.Glu1329Ter	p.E1329*	ENST00000350721	NM_001184.3	1329	Gaa/Taa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	51	337	1	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	16	384	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921533	178921533	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1428379257		P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	56	394	0	ENST00000263967.3:c.1015C>A	p.Leu339Ile	p.L339I	ENST00000263967	NM_006218.2	339	Ctt/Att																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	73	377	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902403	1902403	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	111	580	0	ENST00000382891.5:c.22A>G	p.Ser8Gly	p.S8G	ENST00000382891	NM_133335.3	8	Agt/Ggt																																																																														
TET2	0	MSKCC	GRCh37	4	106155583	106155583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	74	367	0	ENST00000380013.4:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000380013	NM_001127208.2	162	Gat/Tat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	18	464	1	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	81	460	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
FAT1	0	MSKCC	GRCh37	4	187532612	187532612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	39	341	0	ENST00000441802.2:c.9781G>A	p.Ala3261Thr	p.A3261T	ENST00000441802	NM_005245.3	3261	Gca/Aca																																																																														
TERT	0	MSKCC	GRCh37	5	1293525	1293525	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	118	624	0	ENST00000310581.5:c.1476G>T	p.Lys492Asn	p.K492N	ENST00000310581	NM_198253.2	492	aaG/aaT																																																																														
DROSHA	0	MSKCC	GRCh37	5	31449464	31449464	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	107	401	0	ENST00000344624.3:c.2745T>G	p.Asn915Lys	p.N915K	ENST00000344624		915	aaT/aaG																																																																														
RICTOR	0	MSKCC	GRCh37	5	38945790	38945790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	38	250	0	ENST00000357387.3:c.4436C>A	p.Ser1479Tyr	p.S1479Y	ENST00000357387	NM_152756.3	1479	tCt/tAt																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950648	38950648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776074870		P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	57	333	0	ENST00000357387.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000357387	NM_152756.3	1101	tCg/tTg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56184142	56184142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	74	396	0	ENST00000399503.3:c.4347G>A	p.Trp1449Ter	p.W1449*	ENST00000399503	NM_005921.1	1449	tgG/tgA																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56184161	56184161	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	89	337	0	ENST00000399503.3:c.4366A>G	p.Asn1456Asp	p.N1456D	ENST00000399503	NM_005921.1	1456	Aat/Gat																																																																														
MSH3	0	MSKCC	GRCh37	5	79960969	79960969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	43	322	0	ENST00000265081.6:c.366G>T	p.Lys122Asn	p.K122N	ENST00000265081	NM_002439.4	122	aaG/aaT																																																																														
APC	0	MSKCC	GRCh37	5	112173582	112173582	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	43	299	0	ENST00000257430.4:c.2291T>G	p.Leu764Ter	p.L764*	ENST00000257430	NM_000038.5	764	tTa/tGa																																																																														
APC	0	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	51	264	0	ENST00000257430.4:c.4634C>A	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tAa																																																																														
APC	0	MSKCC	GRCh37	5	112176873	112176873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	74	382	0	ENST00000257430.4:c.5582C>A	p.Ser1861Tyr	p.S1861Y	ENST00000257430	NM_000038.5	1861	tCt/tAt																																																																														
NSD1	0	MSKCC	GRCh37	5	176638491	176638491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	78	597	1	ENST00000439151.2:c.3091C>T	p.Arg1031Ter	p.R1031*	ENST00000439151	NM_022455.4	1031	Cga/Tga																																																																														
FLT4	0	MSKCC	GRCh37	5	180057021	180057021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	117	724	0	ENST00000261937.6:c.598G>A	p.Asp200Asn	p.D200N	ENST00000261937	NM_182925.4	200	Gat/Aat																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858171	27858171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	37	347	0	ENST00000359303.2:c.400G>A	p.Glu134Lys	p.E134K	ENST00000359303	NM_003535.2	134	Gag/Aag																																																																														
MDC1	0	MSKCC	GRCh37	6	30681925	30681925	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	67	421	2	ENST00000376406.3:c.172C>T	p.Arg58Ter	p.R58*	ENST00000376406	NM_014641.2	58	Cga/Tga																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169953	32169953	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202197092		P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	105	629	2	ENST00000375023.3:c.3655C>T	p.Arg1219Trp	p.R1219W	ENST00000375023	NM_004557.3	1219	Cgg/Tgg																																																																														
TAP2	0	MSKCC	GRCh37	6	32798510	32798510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	111	622	1	ENST00000374899.4:c.1346G>A	p.Arg449Gln	p.R449Q	ENST00000374899	NM_018833.2	449	cGa/cAa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956553	93956553	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	75	399	0	ENST00000369303.4:c.2683C>T	p.Arg895Ter	p.R895*	ENST00000369303	NM_004440.3	895	Cga/Tga																																																																														
ROS1	0	MSKCC	GRCh37	6	117622269	117622269	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	85	466	0	ENST00000368508.3:c.6601G>T	p.Glu2201Ter	p.E2201*	ENST00000368508	NM_002944.2	2201	Gaa/Taa																																																																														
ROS1	0	MSKCC	GRCh37	6	117665270	117665270	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	34	306	0	ENST00000368508.3:c.4477G>T	p.Glu1493Ter	p.E1493*	ENST00000368508	NM_002944.2	1493	Gaa/Taa																																																																														
ROS1	0	MSKCC	GRCh37	6	117687405	117687405	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	47	353	0	ENST00000368508.3:c.2646A>C	p.Glu882Asp	p.E882D	ENST00000368508	NM_002944.2	882	gaA/gaC																																																																														
LATS1	0	MSKCC	GRCh37	6	150016267	150016267	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	87	468	2	ENST00000253339.5:c.439C>T	p.Arg147Ter	p.R147*	ENST00000253339		147	Cga/Tga																																																																														
PARK2	0	MSKCC	GRCh37	6	162206903	162206903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	75	423	0	ENST00000366898.1:c.772G>A	p.Val258Met	p.V258M	ENST00000366898	NM_004562.2	258	Gtg/Atg																																																																														
PMS2	0	MSKCC	GRCh37	7	6026643	6026643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	211	797	0	ENST00000265849.7:c.1753C>A	p.Leu585Ile	p.L585I	ENST00000265849	NM_000535.5	585	Ctt/Att																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509660	106509660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	72	450	1	ENST00000359195.3:c.1654C>T	p.Arg552Cys	p.R552C	ENST00000359195	NM_002649.2	552	Cgc/Tgc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106515182	106515182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	99	485	1	ENST00000359195.3:c.2325G>T	p.Gln775His	p.Q775H	ENST00000359195	NM_002649.2	775	caG/caT																																																																														
CD274	0	MSKCC	GRCh37	9	5466775	5466775	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	49	231	0	ENST00000381577.3:c.796A>G	p.Met266Val	p.M266V	ENST00000381577	NM_014143.3	266	Atg/Gtg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486004	8486004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	28	449	0	ENST00000356435.5:c.2813C>A	p.Ser938Tyr	p.S938Y	ENST00000356435		938	tCt/tAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971037	21971037	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	70	411	0	ENST00000361570.3:c.487C>T	p.Arg163Ter	p.R163*	ENST00000361570	NM_058195.3	163	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971037	21971037	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	70	411	0	ENST00000361570.3:c.487C>T	p.Arg163Ter	p.R163*	ENST00000361570	NM_058195.3	163	Cga/Tga																																																																														
FANCC	0	MSKCC	GRCh37	9	97864023	97864023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	73	470	0	ENST00000289081.3:c.1643G>A	p.Arg548Gln	p.R548Q	ENST00000289081	NM_000136.2	548	cGa/cAa																																																																														
TSC1	0	MSKCC	GRCh37	9	135787834	135787834	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	67	320	0	ENST00000298552.3:c.748T>A	p.Leu250Ile	p.L250I	ENST00000298552	NM_001162426.1	250	Tta/Ata																																																																														
BCOR	0	MSKCC	GRCh37	X	39916551	39916551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	128	506	1	ENST00000378444.4:c.4452G>T	p.Glu1484Asp	p.E1484D	ENST00000378444	NM_001123385.1	1484	gaG/gaT																																																																														
AR	0	MSKCC	GRCh37	X	66942671	66942671	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	25	366	0	ENST00000374690.3:c.2452C>T	p.Pro818Ser	p.P818S	ENST00000374690	NM_000044.3	818	Cca/Tca																																																																														
ATRX	0	MSKCC	GRCh37	X	76938995	76938995	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	94	548	0	ENST00000373344.5:c.1753G>T	p.Glu585Ter	p.E585*	ENST00000373344	NM_000489.3	585	Gaa/Taa																																																																														
BTK	0	MSKCC	GRCh37	X	100612528	100612528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	75	482	0	ENST00000308731.7:c.1146G>T	p.Lys382Asn	p.K382N	ENST00000308731	NM_000061.2	382	aaG/aaT																																																																														
XIAP	0	MSKCC	GRCh37	X	123022564	123022564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	72	453	0	ENST00000355640.3:c.973C>A	p.Pro325Thr	p.P325T	ENST00000355640		325	Cca/Aca																																																																														
STAG2	0	MSKCC	GRCh37	X	123229252	123229252	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	31	396	0	ENST00000218089.9:c.3736G>T	p.Glu1246Ter	p.E1246*	ENST00000218089	NM_001042749.1	1246	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	566	498	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993057	72993057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	286	818	2	ENST00000268489.5:c.988G>A	p.Gly330Ser	p.G330S	ENST00000268489	NM_006885.3	330	Ggc/Agc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692889	89692889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	242	455	0	ENST00000371953.3:c.373A>G	p.Lys125Glu	p.K125E	ENST00000371953	NM_000314.4	125	Aaa/Gaa																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43707849	43707849	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	494	845	0	ENST00000382044.4:c.5032T>A	p.Ser1678Thr	p.S1678T	ENST00000382044	NM_001141980.1	1678	Tct/Act																																																																														
NCOR1	0	MSKCC	GRCh37	17	16062188	16062188	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0029715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	49	513	0	ENST00000268712.3:c.619-1G>A		p.X207_splice	ENST00000268712	NM_006311.3	207																																																																															
BMPR1A	0	MSKCC	GRCh37	10	88651937	88651937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	145	568	0	ENST00000372037.3:c.284C>T	p.Thr95Ile	p.T95I	ENST00000372037	NM_004329.2	95	aCa/aTa																																																																														
MDC1	0	MSKCC	GRCh37	6	30680890	30680890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	172	761	0	ENST00000376406.3:c.829G>A	p.Gly277Ser	p.G277S	ENST00000376406	NM_014641.2	277	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	837	745	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120872	94120872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	125	404	0	ENST00000369303.4:c.179G>T	p.Gly60Val	p.G60V	ENST00000369303	NM_004440.3	60	gGt/gTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	293	399	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	391	950	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	138	538	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	362	785	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	506	549	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ACVR1	0	MSKCC	GRCh37	2	158617517	158617517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	246	611	0	ENST00000263640.3:c.1139G>A	p.Arg380His	p.R380H	ENST00000263640	NM_001105.4	380	cGc/cAc																																																																														
RAD52	0	MSKCC	GRCh37	12	1036329	1036329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	94	762	0	ENST00000358495.3:c.449G>A	p.Gly150Glu	p.G150E	ENST00000358495	NM_134424.2	150	gGg/gAg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169878	32169878	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	518	924	1	ENST00000375023.3:c.3730G>T	p.Asp1244Tyr	p.D1244Y	ENST00000375023	NM_004557.3	1244	Gac/Tac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	276	291	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	276	665	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																														
NF1	0	MSKCC	GRCh37	17	29560085	29560085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	170	343	1	ENST00000358273.4:c.3562C>T	p.Gln1188Ter	p.Q1188*	ENST00000358273	NM_001042492.2	1188	Caa/Taa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16005060	16005060	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0029726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	122	482	0	ENST00000268712.3:c.2194A>T	p.Lys732Ter	p.K732*	ENST00000268712	NM_006311.3	732	Aag/Tag																																																																														
SHQ1	0	MSKCC	GRCh37	3	72890321	72890321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	209	496	2	ENST00000325599.8:c.361G>A	p.Asp121Asn	p.D121N	ENST00000325599	NM_018130.2	121	Gac/Aac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139410535	139410535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	140	591	0	ENST00000277541.6:c.1567C>T	p.His523Tyr	p.H523Y	ENST00000277541	NM_017617.3	523	Cat/Tat																																																																														
ATM	0	MSKCC	GRCh37	11	108201015	108201015	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	179	390	0	ENST00000278616.4:c.7382G>C	p.Arg2461Pro	p.R2461P	ENST00000278616	NM_000051.3	2461	cGc/cCc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	270	362	0				ENST00000310581	NM_198253.2																																																																																
ATM	0	MSKCC	GRCh37	11	108224493	108224493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	99	253	0	ENST00000278616.4:c.8672G>T	p.Gly2891Val	p.G2891V	ENST00000278616	NM_000051.3	2891	gGt/gTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9525086	9525086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	262	549	1	ENST00000353224.5:c.1799G>A	p.Arg600Lys	p.R600K	ENST00000353224	NM_177990.2	600	aGg/aAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	117	660	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138417865	138417865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	118	577	0	ENST00000289153.2:c.1654G>A	p.Glu552Lys	p.E552K	ENST00000289153	NM_006219.2	552	Gaa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692930	89692930	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	149	653	0	ENST00000371953.3:c.416del	p.Leu139TyrfsTer8	p.L139Yfs*8	ENST00000371953	NM_000314.4	138	taT/ta																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224169	36224169	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	67	624	0	ENST00000222270.7:c.6719T>A	p.Leu2240His	p.L2240H	ENST00000222270	NM_014727.1	2240	cTc/cAc																																																																														
SOX2	0	MSKCC	GRCh37	3	181430921	181430921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	89	812	0	ENST00000325404.1:c.773C>A	p.Ser258Tyr	p.S258Y	ENST00000325404	NM_003106.3	258	tCc/tAc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937067	36937067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	25	485	1	ENST00000361632.4:c.1252C>T	p.Arg418Cys	p.R418C	ENST00000361632		418	Cgt/Tgt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18650598	18650598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	19	478	0	ENST00000266497.5:c.2809C>G	p.Gln937Glu	p.Q937E	ENST00000266497		937	Caa/Gaa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67477063	67477063	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0029729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	89	380	0	ENST00000327367.4:c.872-2A>T		p.X291_splice	ENST00000327367	NM_005902.3	291																																																																															
EP300	0	MSKCC	GRCh37	22	41572510	41572510	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	297	618	0	ENST00000263253.7:c.5039G>C	p.Arg1680Pro	p.R1680P	ENST00000263253	NM_001429.3	1680	cGc/cCc																																																																														
SETD2	0	MSKCC	GRCh37	3	47165131	47165131	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0029729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	23	232	0	ENST00000409792.3:c.995C>G	p.Ser332Ter	p.S332*	ENST00000409792	NM_014159.6	332	tCa/tGa																																																																														
ROS1	0	MSKCC	GRCh37	6	117630033	117630033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	18	478	0	ENST00000368508.3:c.6493C>T	p.His2165Tyr	p.H2165Y	ENST00000368508	NM_002944.2	2165	Cat/Tat																																																																														
EGFR	0	MSKCC	GRCh37	7	55211019	55211019	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	100	406	0	ENST00000275493.2:c.262T>A	p.Tyr88Asn	p.Y88N	ENST00000275493	NM_005228.3	88	Tat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	37	446	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	58	762	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
HRAS	0	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	36	600	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652097	36652098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	57	816	0	ENST00000244741.5:c.222dup	p.Lys75GlnfsTer14	p.K75Qfs*14	ENST00000244741	NM_000389.4	73	-/C																																																																														
IGF1R	0	MSKCC	GRCh37	15	99251273	99251273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	62	652	0	ENST00000268035.6:c.577G>A	p.Glu193Lys	p.E193K	ENST00000268035	NM_000875.3	193	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	163	956	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
CTCF	0	MSKCC	GRCh37	16	67670670	67670670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	107	794	0	ENST00000264010.4:c.1915C>A	p.Gln639Lys	p.Q639K	ENST00000264010	NM_006565.3	639	Cag/Aag																																																																														
TBX3	0	MSKCC	GRCh37	12	115117750	115117750	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	67	589	0	ENST00000257566.3:c.685A>T	p.Thr229Ser	p.T229S	ENST00000257566	NM_016569.3	229	Acg/Tcg																																																																														
APC	0	MSKCC	GRCh37	5	112136985	112136985	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	42	515	0	ENST00000257430.4:c.739C>T	p.Gln247Ter	p.Q247*	ENST00000257430	NM_000038.5	247	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0029738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	124	671	1	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
MTOR	0	MSKCC	GRCh37	1	11303184	11303184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	50	620	0	ENST00000361445.4:c.1399G>A	p.Asp467Asn	p.D467N	ENST00000361445	NM_004958.3	467	Gac/Aac																																																																														
MGA	0	MSKCC	GRCh37	15	42034888	42034888	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	62	566	0	ENST00000219905.7:c.4730T>C	p.Val1577Ala	p.V1577A	ENST00000219905	NM_001164273.1	1577	gTc/gCc																																																																														
TP53	0	MSKCC	GRCh37	17	7579395	7579398	+	frameshift_variant	Frame_Shift_Del	DEL	GGAC	GGAC	-			P-0029738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	153	902	2	ENST00000269305.4:c.289_292del	p.Val97LeufsTer25	p.V97Lfs*25	ENST00000269305	NM_001126112.2	97	GTCCct/ct																																																																														
WWTR1	0	MSKCC	GRCh37	3	149290747	149290747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	63	625	0	ENST00000360632.3:c.472G>T	p.Ala158Ser	p.A158S	ENST00000360632	NM_015472.4	158	Gcg/Tcg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	14	646	3	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105800	27105809	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGATCAG	AGCTGATCAG	-			P-0029740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	77	453	0	ENST00000324856.7:c.5411_5420del	p.Lys1804IlefsTer8	p.K1804Ifs*8	ENST00000324856	NM_006015.4	1804	aAGCTGATCAGt/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	63	404	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0029742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	214	529	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
RAC1	0	MSKCC	GRCh37	7	6441986	6441986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	252	578	2	ENST00000356142.4:c.545G>A	p.Arg182Gln	p.R182Q	ENST00000356142	NM_018890.3	182	cGa/cAa																																																																														
CDK8	0	MSKCC	GRCh37	13	26959350	26959350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0029742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	95	289	0	ENST00000381527.3:c.517G>C	p.Asp173His	p.D173H	ENST00000381527	NM_001260.1	173	Gac/Cac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094386	27094386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	142	556	1	ENST00000324856.7:c.3094G>A	p.Glu1032Lys	p.E1032K	ENST00000324856	NM_006015.4	1032	Gag/Aag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151947033	151947033	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	62	445	0	ENST00000262189.6:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000262189	NM_170606.2	581	Caa/Taa																																																																														
EZH1	0	MSKCC	GRCh37	17	40865395	40865395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	72	696	0	ENST00000428826.2:c.1036G>C	p.Glu346Gln	p.E346Q	ENST00000428826		346	Gag/Cag																																																																														
ERF	0	MSKCC	GRCh37	19	42753155	42753155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	151	675	0	ENST00000222329.4:c.1109C>T	p.Ser370Phe	p.S370F	ENST00000222329	NM_006494.2	370	tCt/tTt																																																																														
ERG	0	MSKCC	GRCh37	21	39795414	39795414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	109	686	0	ENST00000288319.7:c.306G>A	p.Met102Ile	p.M102I	ENST00000288319	NM_182918.3	102	atG/atA																																																																														
MAPK1	0	MSKCC	GRCh37	22	22221643	22221643	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	133	356	0	ENST00000215832.6:c.88T>A	p.Tyr30Asn	p.Y30N	ENST00000215832	NM_002745.4	30	Tac/Aac																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652060	36652060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	244	828	1	ENST00000244741.5:c.182G>T	p.Gly61Val	p.G61V	ENST00000244741	NM_000389.4	61	gGt/gTt																																																																														
MEN1	0	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0029749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	390	563	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																														
TSC2	0	MSKCC	GRCh37	16	2135297	2135297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	473	622	1	ENST00000219476.3:c.4636G>A	p.Ala1546Thr	p.A1546T	ENST00000219476	NM_000548.3	1546	Gcc/Acc																																																																														
DAXX	0	MSKCC	GRCh37	6	33286525	33286526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0029749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	254	316	0	ENST00000374542.5:c.2217_2218insTT	p.Asp740LeufsTer27	p.D740Lfs*27	ENST00000374542	NM_001141970.1	739	-/TT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	9	489	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59760929	59760929	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	61	388	0	ENST00000259008.2:c.3478A>G	p.Asn1160Asp	p.N1160D	ENST00000259008	NM_032043.2	1160	Aac/Gac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023909	27023923	+	inframe_deletion	In_Frame_Del	DEL	GCTGCGGCGGCGGCA	GCTGCGGCGGCGGCA	-	rs751352361		P-0029756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	25	57	0	ENST00000324856.7:c.1029_1043del	p.Ala345_Ala349del	p.A345_A349del	ENST00000324856	NM_006015.4	339	GCTGCGGCGGCGGCA/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	405	598	0	ENST00000269305.4:c.658T>G	p.Tyr220Asp	p.Y220D	ENST00000269305	NM_001126112.2	220	Tat/Gat																																																																														
PBRM1	0	MSKCC	GRCh37	3	52620566	52620566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	170	419	0	ENST00000394830.3:c.3187C>T	p.Arg1063Trp	p.R1063W	ENST00000394830	NM_018313.4	1063	Cgg/Tgg																																																																														
ATM	0	MSKCC	GRCh37	11	108150240	108150240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	67	254	0	ENST00000278616.4:c.3307G>A	p.Asp1103Asn	p.D1103N	ENST00000278616	NM_000051.3	1103	Gat/Aat																																																																														
APC	0	MSKCC	GRCh37	5	112174080	112174080	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	99	274	0	ENST00000257430.4:c.2789del	p.Thr930AsnfsTer25	p.T930Nfs*25	ENST00000257430	NM_000038.5	930	aCa/aa																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	363	389	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	306	405	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
U2AF1	0	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	66	249	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100129	27100129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	749	631	0	ENST00000324856.7:c.3925C>T	p.Leu1309Phe	p.L1309F	ENST00000324856	NM_006015.4	1309	Ctc/Ttc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156838343	156838344	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1397	441	750	2	ENST00000524377.1:c.621_622delinsAA	p.Gly208Arg	p.G208R	ENST00000524377	NM_002529.3	207	gtGGgg/gtAAgg																																																																														
TET1	0	MSKCC	GRCh37	10	70333437	70333437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	354	577	0	ENST00000373644.4:c.1342A>G	p.Lys448Glu	p.K448E	ENST00000373644	NM_030625.2	448	Aaa/Gaa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344269	118344269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	143	399	0	ENST00000534358.1:c.2395C>T	p.Pro799Ser	p.P799S	ENST00000534358	NM_005933.3	799	Cct/Tct																																																																														
ARID2	0	MSKCC	GRCh37	12	46230543	46230543	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	91	329	0	ENST00000334344.6:c.792G>A	p.Trp264Ter	p.W264*	ENST00000334344	NM_152641.2	264	tgG/tgA																																																																														
ARID2	0	MSKCC	GRCh37	12	46233128	46233194	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTTCTATGGATATTCAGATGTTTGGCCCTGATGCACTAGCTGCGGTAAAACTCATTGAACACCCA	GGTTTCTATGGATATTCAGATGTTTGGCCCTGATGCACTAGCTGCGGTAAAACTCATTGAACACCCA	-			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	111	221	0	ENST00000334344.6:c.1347_1413del	p.Ser451ProfsTer14	p.S451Pfs*14	ENST00000334344	NM_152641.2	449	ctGGTTTCTATGGATATTCAGATGTTTGGCCCTGATGCACTAGCTGCGGTAAAACTCATTGAACACCCA/ct																																																																														
PTPN11	0	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	347	429	1	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060679	38060679	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	384	784	0	ENST00000250448.2:c.1310T>G	p.Leu437Arg	p.L437R	ENST00000250448	NM_004496.3	437	cTg/cGg																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66735628	66735628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	161	300	0	ENST00000307102.5:c.449C>T	p.Ser150Phe	p.S150F	ENST00000307102	NM_002755.3	150	tCt/tTt																																																																														
AXIN1	0	MSKCC	GRCh37	16	396310	396310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	239	701	0	ENST00000262320.3:c.716C>T	p.Pro239Leu	p.P239L	ENST00000262320	NM_003502.3	239	cCg/cTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857365	9857365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	365	455	0	ENST00000330684.3:c.4036C>A	p.Gln1346Lys	p.Q1346K	ENST00000330684	NM_001134407.1	1346	Caa/Aaa																																																																														
SOCS1	0	MSKCC	GRCh37	16	11349280	11349280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	344	372	0	ENST00000332029.2:c.56C>T	p.Pro19Leu	p.P19L	ENST00000332029	NM_003745.1	19	cCc/cTc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81973508	81973508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	262	429	1	ENST00000359376.3:c.3325C>T	p.Leu1109Phe	p.L1109F	ENST00000359376	NM_002661.3	1109	Ctc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	511	666	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15971304	15971304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	376	480	0	ENST00000268712.3:c.4645C>T	p.Pro1549Ser	p.P1549S	ENST00000268712	NM_006311.3	1549	Ccc/Tcc																																																																														
NF1	0	MSKCC	GRCh37	17	29560226	29560226	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	329	246	0	ENST00000358273.4:c.3703C>T	p.Gln1235Ter	p.Q1235*	ENST00000358273	NM_001042492.2	1235	Cag/Tag																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	373	554	0	ENST00000322088.6:c.536C>T	p.Pro179Leu	p.P179L	ENST00000322088	NM_014225.5	179	cCc/cTc																																																																														
REL	0	MSKCC	GRCh37	2	61149561	61149562	+	missense_variant	Missense_Mutation	DNP	CT	CT	TC			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	294	364	0	ENST00000295025.8:c.1751_1752delinsTC	p.Thr584Ile	p.T584I	ENST00000295025	NM_002908.2	584	aCT/aTC																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248486	212248486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	271	330	0	ENST00000342788.4:c.3781G>A	p.Glu1261Lys	p.E1261K	ENST00000342788	NM_005235.2	1261	Gag/Aag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530082	212530082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	214	292	0	ENST00000342788.4:c.1837G>A	p.Glu613Lys	p.E613K	ENST00000342788	NM_005235.2	613	Gag/Aag																																																																														
PAK7	0	MSKCC	GRCh37	20	9561555	9561555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	119	407	0	ENST00000353224.5:c.227C>T	p.Pro76Leu	p.P76L	ENST00000353224	NM_177990.2	76	cCc/cTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727078	40727078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	315	427	0	ENST00000373198.4:c.3886G>A	p.Glu1296Lys	p.E1296K	ENST00000373198	NM_133170.3	1296	Gag/Aag																																																																														
PTPRT	0	MSKCC	GRCh37	20	41400190	41400190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	274	430	0	ENST00000373198.4:c.569G>A	p.Arg190Lys	p.R190K	ENST00000373198	NM_133170.3	190	aGa/aAa																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42842633	42842633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	496	635	0	ENST00000398585.3:c.1224G>A	p.Met408Ile	p.M408I	ENST00000398585	NM_001135099.1	408	atG/atA																																																																														
TP63	0	MSKCC	GRCh37	3	189604259	189604259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	371	504	2	ENST00000264731.3:c.1426C>T	p.Pro476Ser	p.P476S	ENST00000264731	NM_003722.4	476	Cct/Tct																																																																														
SDHA	0	MSKCC	GRCh37	5	233645	233645	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	137	172	0	ENST00000264932.6:c.949A>T	p.Ile317Phe	p.I317F	ENST00000264932	NM_004168.2	317	Att/Ttt																																																																														
TERT	0	MSKCC	GRCh37	5	1294376	1294376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	440	565	1	ENST00000310581.5:c.625G>A	p.Glu209Lys	p.E209K	ENST00000310581	NM_198253.2	209	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	334	332	0				ENST00000310581	NM_198253.2																																																																																
MAP3K1	0	MSKCC	GRCh37	5	56168680	56168680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	280	385	0	ENST00000399503.3:c.1534C>T	p.Pro512Ser	p.P512S	ENST00000399503	NM_005921.1	512	Cct/Tct																																																																														
ROS1	0	MSKCC	GRCh37	6	117662625	117662625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	172	385	0	ENST00000368508.3:c.4840C>T	p.Pro1614Ser	p.P1614S	ENST00000368508	NM_002944.2	1614	Cca/Tca																																																																														
CARD11	0	MSKCC	GRCh37	7	2968280	2968280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	203	700	1	ENST00000396946.4:c.1706G>A	p.Gly569Glu	p.G569E	ENST00000396946	NM_032415.4	569	gGa/gAa																																																																														
HGF	0	MSKCC	GRCh37	7	81346631	81346631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	184	315	0	ENST00000222390.5:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000222390	NM_000601.4	441	cGa/cAa																																																																														
HGF	0	MSKCC	GRCh37	7	81381505	81381505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	202	334	0	ENST00000222390.5:c.556G>A	p.Gly186Arg	p.G186R	ENST00000222390	NM_000601.4	186	Gga/Aga																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401389	139401389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	459	649	1	ENST00000277541.6:c.3680C>T	p.Pro1227Leu	p.P1227L	ENST00000277541	NM_017617.3	1227	cCc/cTc																																																																														
BCOR	0	MSKCC	GRCh37	X	39932639	39932639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	617	442	1	ENST00000378444.4:c.1960C>T	p.Pro654Ser	p.P654S	ENST00000378444	NM_001123385.1	654	Ccc/Tcc																																																																														
ATRX	0	MSKCC	GRCh37	X	76939801	76939801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	397	248	0	ENST00000373344.5:c.947C>T	p.Ser316Phe	p.S316F	ENST00000373344	NM_000489.3	316	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	94	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	146	560	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0029767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	90	318	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727143	40727143	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	62	554	1	ENST00000373198.4:c.3821A>T	p.Asn1274Ile	p.N1274I	ENST00000373198	NM_133170.3	1274	aAc/aTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	714	573	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
ALK	0	MSKCC	GRCh37	2	29446209	29446209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	161	361	0	ENST00000389048.3:c.3358C>T	p.Arg1120Trp	p.R1120W	ENST00000389048	NM_004304.4	1120	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	114	372	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	135	383	0				ENST00000310581	NM_198253.2																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0029772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	124	259	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ERCC4	0	MSKCC	GRCh37	16	14014128	14014128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	223	502	0	ENST00000311895.7:c.106G>A	p.Ala36Thr	p.A36T	ENST00000311895	NM_005236.2	36	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	235	489	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
TET1	0	MSKCC	GRCh37	10	70441169	70441169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	63	329	0	ENST00000373644.4:c.4838A>G	p.Glu1613Gly	p.E1613G	ENST00000373644	NM_030625.2	1613	gAa/gGa																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871772	35871772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	38	403	0	ENST00000216797.5:c.734G>A	p.Arg245Lys	p.R245K	ENST00000216797	NM_020529.2	245	aGa/aAa																																																																														
TP63	0	MSKCC	GRCh37	3	189526299	189526304	+	inframe_deletion	In_Frame_Del	DEL	AGTCGG	AGTCGG	-			P-0029775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	327	332	0	ENST00000264731.3:c.563_568del	p.Lys188_Ala190delinsThr	p.K188_A190delinsT	ENST00000264731	NM_003722.4	188	aAGTCGGcc/acc																																																																														
MDC1	0	MSKCC	GRCh37	6	30681880	30681880	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0029775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	84	359	0	ENST00000376406.3:c.217A>T	p.Lys73Ter	p.K73*	ENST00000376406	NM_014641.2	73	Aaa/Taa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974705	21974706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0029775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	104	309	0	ENST00000304494.5:c.121_122insTT	p.Pro41LeufsTer13	p.P41Lfs*13	ENST00000304494	NM_000077.4	41	ccg/cTTcg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974705	21974706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0029775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	104	309	0	ENST00000304494.5:c.121_122insTT	p.Pro41LeufsTer13	p.P41Lfs*13	ENST00000304494	NM_000077.4	41	ccg/cTTcg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	14	423	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	151	495	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	151	242	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	59	174	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	45	473	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	117	167	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	63	158	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	53	746	4	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
BCL6	0	MSKCC	GRCh37	3	187446269	187446270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	55	565	0	ENST00000232014.4:c.1418dupC	p.Lys474GlufsTer26	p.K474Efs*26	ENST00000232014	NM_001130845.1	473	ccg/ccCg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94203691	94203691	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	27	107	0	ENST00000323929.3:c.963del	p.Phe321LeufsTer8	p.F321Lfs*8	ENST00000323929	NM_005591.3	321	ttT/tt																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	20	215	1	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																														
MED12	0	MSKCC	GRCh37	X	70338671	70338671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	210	639	0	ENST00000374080.3:c.67G>T	p.Asp23Tyr	p.D23Y	ENST00000374080		23	Gat/Tat																																																																														
CDC73	0	MSKCC	GRCh37	1	193107257	193107257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	44	207	0	ENST00000367435.3:c.466C>T	p.Arg156Cys	p.R156C	ENST00000367435	NM_024529.4	156	Cgt/Tgt																																																																														
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	33	657	6	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	38	117	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692900	89692900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	19	180	0	ENST00000371953.3:c.384G>T	p.Lys128Asn	p.K128N	ENST00000371953	NM_000314.4	128	aaG/aaT																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	163	750	6	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																														
CIC	0	MSKCC	GRCh37	19	42799248	42799248	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	107	585	0	ENST00000575354.2:c.4736del	p.Pro1579GlnfsTer41	p.P1579Qfs*41	ENST00000575354	NM_015125.3	1578	Ccc/cc																																																																														
FYN	0	MSKCC	GRCh37	6	112020771	112020771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	33	362	1	ENST00000368678.4:c.800C>T	p.Ser267Leu	p.S267L	ENST00000368678		267	tCg/tTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948755	71948755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	50	659	0	ENST00000298229.2:c.3470del	p.Gly1157AspfsTer45	p.G1157Dfs*45	ENST00000298229	NM_001567.3	1156	cGg/cg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023338	27023338	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	54	118	0	ENST00000324856.7:c.444C>G	p.Tyr148Ter	p.Y148*	ENST00000324856	NM_006015.4	148	taC/taG																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699404	117699404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	59	485	0	ENST00000369458.3:c.237G>T	p.Leu79Phe	p.L79F	ENST00000369458	NM_024626.3	79	ttG/ttT																																																																														
CDC73	0	MSKCC	GRCh37	1	193111146	193111147	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	97	207	1	ENST00000367435.3:c.687_688del	p.Arg229SerfsTer37	p.R229Sfs*37	ENST00000367435	NM_024529.4	227	AGa/a																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852552	63852553	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	26	393	0	ENST00000279873.7:c.3332_3333del	p.Val1111AlafsTer49	p.V1111Afs*49	ENST00000279873	NM_032199.2	1110	acTGtg/actg																																																																														
TET1	0	MSKCC	GRCh37	10	70405477	70405477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	141	245	0	ENST00000373644.4:c.2994del	p.Val999SerfsTer27	p.V999Sfs*27	ENST00000373644	NM_030625.2	997	tcA/tc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720693	89720693	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	35	28	0	ENST00000371953.3:c.844G>T	p.Gly282Ter	p.G282*	ENST00000371953	NM_000314.4	282	Gga/Tga																																																																														
FLT1	0	MSKCC	GRCh37	13	29068966	29068966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	16	227	0	ENST00000282397.4:c.15G>T	p.Trp5Cys	p.W5C	ENST00000282397	NM_002019.4	5	tgG/tgT																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346981	89346981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	123	413	0	ENST00000301030.4:c.5969C>T	p.Ser1990Phe	p.S1990F	ENST00000301030	NM_001256183.1	1990	tCc/tTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15295219	15295219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	46	836	0	ENST00000263388.2:c.2453C>T	p.Ala818Val	p.A818V	ENST00000263388	NM_000435.2	818	gCa/gTa																																																																														
BRD4	0	MSKCC	GRCh37	19	15375215	15375215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	46	352	0	ENST00000263377.2:c.1212G>T	p.Lys404Asn	p.K404N	ENST00000263377	NM_058243.2	404	aaG/aaT																																																																														
MSH2	0	MSKCC	GRCh37	2	47639649	47639649	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	47	245	0	ENST00000233146.2:c.746del	p.Lys249ArgfsTer5	p.K249Rfs*5	ENST00000233146	NM_000251.2	248	Aaa/aa																																																																														
INHA	0	MSKCC	GRCh37	2	220437222	220437223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	53	841	0	ENST00000243786.2:c.132dup	p.Ala45ArgfsTer29	p.A45Rfs*29	ENST00000243786	NM_002191.3	42	-/C																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32189036	32189036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	40	599	1	ENST00000375023.3:c.518C>T	p.Ala173Val	p.A173V	ENST00000375023	NM_004557.3	173	gCc/gTc																																																																														
JAK2	0	MSKCC	GRCh37	9	5090759	5090759	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	21	85	0	ENST00000381652.3:c.2911del	p.Arg971GlyfsTer27	p.R971Gfs*27	ENST00000381652	NM_004972.3	969	acA/ac																																																																														
FANCC	0	MSKCC	GRCh37	9	97912223	97912223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	138	490	0	ENST00000289081.3:c.668T>C	p.Val223Ala	p.V223A	ENST00000289081	NM_000136.2	223	gTa/gCa																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101867518	101867518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	11	32	0	ENST00000374994.4:c.31C>G	p.Arg11Gly	p.R11G	ENST00000374994	NM_004612.2	11	Cgg/Ggg																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	48	490	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	131	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0029780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	63	296	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0029780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	63	296	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0029780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	63	296	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969369	44969369	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	67	179	0	ENST00000377967.4:c.4051C>T	p.Arg1351Ter	p.R1351*	ENST00000377967	NM_021140.2	1351	Cga/Tga																																																																														
RRAGC	0	MSKCC	GRCh37	1	39325170	39325170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	350	401	0	ENST00000373001.3:c.149G>A	p.Gly50Asp	p.G50D	ENST00000373001	NM_022157.3	50	gGt/gAt																																																																														
MEN1	0	MSKCC	GRCh37	11	64577441	64577441	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	847	467	1	ENST00000337652.1:c.141del	p.Leu48TrpfsTer71	p.L48Wfs*71	ENST00000337652	NM_130803.2	47	ttT/tt																																																																														
IRS2	0	MSKCC	GRCh37	13	110434527	110434527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1408	313	342	0	ENST00000375856.3:c.3874G>A	p.Gly1292Ser	p.G1292S	ENST00000375856	NM_003749.2	1292	Ggt/Agt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80646131	80646131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	50	48	0	ENST00000286548.4:c.21G>T	p.Met7Ile	p.M7I	ENST00000286548	NM_002072.3	7	atG/atT																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240039	53240039	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0029785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	55	543	0	ENST00000375401.3:c.1402G>T	p.Glu468Ter	p.E468*	ENST00000375401	NM_004187.3	468	Gag/Tag																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798440	45798440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	96	529	0	ENST00000372115.3:c.529C>T	p.Arg177Trp	p.R177W	ENST00000372115	NM_001048171.1	177	Cgg/Tgg																																																																														
CHEK2	0	MSKCC	GRCh37	22	29130612	29130612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	78	399	0	ENST00000328354.6:c.98C>T	p.Ser33Leu	p.S33L	ENST00000328354	NM_007194.3	33	tCa/tTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	131	444	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	74	308	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	34	537	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	115	506	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0029790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	61	511	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468297	50468297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	30	385	0	ENST00000331340.3:c.1532G>A	p.Arg511Gln	p.R511Q	ENST00000331340	NM_006060.4	511	cGa/cAa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214899	36214899	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	73	494	0	ENST00000222270.7:c.3325C>T	p.Arg1109Ter	p.R1109*	ENST00000222270	NM_014727.1	1109	Cga/Tga																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211622	36211643	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCTGTGGTCCCAGCTACGTG	CTCCTGTGGTCCCAGCTACGTG	-			P-0029790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	19	440	0	ENST00000222270.7:c.1377_1398del	p.Val460GlyfsTer8	p.V460Gfs*8	ENST00000222270	NM_014727.1	458	cCTCCTGTGGTCCCAGCTACGTGc/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	70	469	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	136	380	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MGA	0	MSKCC	GRCh37	15	41991076	41991076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	83	327	0	ENST00000219905.7:c.2029C>T	p.His677Tyr	p.H677Y	ENST00000219905	NM_001164273.1	677	Cat/Tat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992138	72992138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	85	455	0	ENST00000268489.5:c.1907C>T	p.Ser636Leu	p.S636L	ENST00000268489	NM_006885.3	636	tCg/tTg																																																																														
RBM10	0	MSKCC	GRCh37	X	47044713	47044713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	145	359	0	ENST00000329236.7:c.1879G>T	p.Glu627Ter	p.E627*	ENST00000329236	NM_001204466.1	627	Gag/Tag																																																																														
GLI1	0	MSKCC	GRCh37	12	57864852	57864852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	98	533	0	ENST00000228682.2:c.2329C>G	p.Gln777Glu	p.Q777E	ENST00000228682	NM_005269.2	777	Caa/Gaa																																																																														
RB1	0	MSKCC	GRCh37	13	48941652	48941652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	31	204	0	ENST00000267163.4:c.962A>G	p.Tyr321Cys	p.Y321C	ENST00000267163	NM_000321.2	321	tAc/tGc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30194799	30194799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	130	529	0	ENST00000331968.5:c.346C>G	p.Leu116Val	p.L116V	ENST00000331968	NM_002742.2	116	Ctg/Gtg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5273574	5273574	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	89	357	0	ENST00000357368.4:c.258T>G	p.Ser86Arg	p.S86R	ENST00000357368	NM_002850.3	86	agT/agG																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291932	15291932	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	148	673	0	ENST00000263388.2:c.2834C>G	p.Ser945Trp	p.S945W	ENST00000263388	NM_000435.2	945	tCg/tGg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469594	25469594	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	112	558	1	ENST00000264709.3:c.1174G>T	p.Glu392Ter	p.E392*	ENST00000264709	NM_175629.2	392	Gag/Tag																																																																														
ALK	0	MSKCC	GRCh37	2	29606597	29606597	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	82	297	0	ENST00000389048.3:c.1282+1G>T		p.X428_splice	ENST00000389048	NM_004304.4	428																																																																															
PTPRT	0	MSKCC	GRCh37	20	40714479	40714479	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	88	374	0	ENST00000373198.4:c.3918C>A	p.Tyr1306Ter	p.Y1306*	ENST00000373198	NM_133170.3	1306	taC/taA																																																																														
AMER1	0	MSKCC	GRCh37	X	63411009	63411010	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0029792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	77	253	0	ENST00000330258.3:c.2157_2158delinsAA	p.Met719_Gln720delinsIleLys	p.M719_Q720delinsIK	ENST00000330258	NM_152424.3	719	atGCag/atAAag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	80	580	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643942	52643943	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	41	343	0	ENST00000394830.3:c.1953dup	p.Ser652IlefsTer13	p.S652Ifs*13	ENST00000394830	NM_018313.4	651	-/A																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589663	67589663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0029796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	38	217	0	ENST00000274335.5:c.1425+1G>A		p.X475_splice	ENST00000274335		475																																																																															
INPPL1	0	MSKCC	GRCh37	11	71941034	71941034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	56	663	0	ENST00000298229.2:c.910G>T	p.Ala304Ser	p.A304S	ENST00000298229	NM_001567.3	304	Gcc/Tcc																																																																														
BTK	0	MSKCC	GRCh37	X	100617643	100617644	+	stop_gained	Nonsense_Mutation	INS	-	-	TATTTC			P-0029796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	67	278	0	ENST00000308731.7:c.420_425dup	p.Lys141_Tyr142insTer	p.K141_Y142ins*	ENST00000308731	NM_000061.2	142	tat/taGAAATAt																																																																														
SPEN	0	MSKCC	GRCh37	1	16247449	16247449	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	51	277	0	ENST00000375759.3:c.1720G>C	p.Gly574Arg	p.G574R	ENST00000375759	NM_015001.2	574	Ggg/Cgg																																																																														
PPM1D	0	MSKCC	GRCh37	17	58677780	58677780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	87	431	0	ENST00000305921.3:c.5C>A	p.Ala2Glu	p.A2E	ENST00000305921	NM_003620.3	2	gCg/gAg																																																																														
STK11	0	MSKCC	GRCh37	19	1221327	1221343	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCTGCTGAAAGGTGG	GACCTGCTGAAAGGTGG	-			P-0029798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	155	455	0	ENST00000326873.7:c.852_862+6del		p.X284_splice	ENST00000326873	NM_000455.4	284																																																																															
EPHA5	0	MSKCC	GRCh37	4	66197814	66197814	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	46	296	0	ENST00000273854.3:c.2885T>A	p.Leu962Gln	p.L962Q	ENST00000273854	NM_004439.5	962	cTa/cAa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149499667	149499667	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	54	489	0	ENST00000261799.4:c.2606G>A	p.Trp869Ter	p.W869*	ENST00000261799	NM_002609.3	869	tGg/tAg																																																																														
BBC3	0	MSKCC	GRCh37	19	47731631	47731631	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	26	148	0	ENST00000449228.1:c.161G>C	p.Arg54Pro	p.R54P	ENST00000449228	NM_001127240.2	54	cGa/cCa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52597493	52597493	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	53	286	1	ENST00000394830.3:c.3817C>T	p.Gln1273Ter	p.Q1273*	ENST00000394830	NM_018313.4	1273	Cag/Tag																																																																														
TSHR	0	MSKCC	GRCh37	14	81558892	81558892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	54	332	0	ENST00000298171.2:c.485C>A	p.Pro162His	p.P162H	ENST00000298171	NM_000369.2	162	cCt/cAt																																																																														
RB1	0	MSKCC	GRCh37	13	49039505	49039505	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0029799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	97	419	0	ENST00000267163.4:c.2489+1G>A		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
NF1	0	MSKCC	GRCh37	17	29562632	29562632	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	83	288	0	ENST00000358273.4:c.3712G>T	p.Glu1238Ter	p.E1238*	ENST00000358273	NM_001042492.2	1238	Gaa/Taa																																																																														
NF1	0	MSKCC	GRCh37	17	29585506	29585506	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	40	129	0	ENST00000358273.4:c.4318A>T	p.Lys1440Ter	p.K1440*	ENST00000358273	NM_001042492.2	1440	Aag/Tag																																																																														
GNA11	0	MSKCC	GRCh37	19	3114940	3114940	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0029799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	96	450	1	ENST00000078429.4:c.477-2A>T		p.X159_splice	ENST00000078429	NM_002067.2	159																																																																															
HGF	0	MSKCC	GRCh37	7	81335071	81335071	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0029799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	51	264	0	ENST00000222390.5:c.1758-2A>T		p.X586_splice	ENST00000222390	NM_000601.4	586																																																																															
FGFR1	0	MSKCC	GRCh37	8	38283763	38283763	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0029799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	100	439	0	ENST00000425967.3:c.715G>T	p.Val239Phe	p.V239F	ENST00000425967	NM_001174067.1	239	Gtc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7579472	7579474	+	frameshift_variant	Frame_Shift_Del	DEL	GGG	GGG	C			P-0029799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	145	556	0	ENST00000269305.4:c.213_215delinsG	p.Pro72ArgfsTer76	p.P72Rfs*76	ENST00000269305	NM_001126112.2	71	ccCCCc/ccGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0029801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	381	568	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0029801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	159	295	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
RB1	0	MSKCC	GRCh37	13	48939078	48939078	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	122	253	0	ENST00000267163.4:c.910G>T	p.Gly304Ter	p.G304*	ENST00000267163	NM_000321.2	304	Gga/Tga																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	35	164	0	ENST00000345146.2:c.394C>G	p.Arg132Gly	p.R132G	ENST00000345146	NM_005896.2	132	Cgt/Ggt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107162	27107162	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	73	312	0	ENST00000324856.7:c.6773T>A	p.Leu2258Gln	p.L2258Q	ENST00000324856	NM_006015.4	2258	cTg/cAg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279563	123279563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	153	371	0	ENST00000358487.5:c.869G>T	p.Trp290Leu	p.W290L	ENST00000358487	NM_000141.4	290	tGg/tTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	223	407	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	92	509	2				ENST00000310581	NM_198253.2																																																																																
PGR	0	MSKCC	GRCh37	11	100933480	100933480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	79	160	0	ENST00000325455.5:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000325455	NM_001202474.3	637	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7576926	7576956	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTAGGAAAGAGGCAAGGAAAGGTGATAAAA	GCTAGGAAAGAGGCAAGGAAAGGTGATAAAA	-			P-0029804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	390	612	0	ENST00000269305.4:c.920-30_920del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
ERBB4	0	MSKCC	GRCh37	2	212285191	212285191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	165	404	0	ENST00000342788.4:c.3110C>T	p.Ser1037Phe	p.S1037F	ENST00000342788	NM_005235.2	1037	tCc/tTc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62321666	62321666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	307	597	0	ENST00000508582.2:c.2357G>A	p.Arg786Gln	p.R786Q	ENST00000508582		786	cGg/cAg																																																																														
MDC1	0	MSKCC	GRCh37	6	30671036	30671036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	373	610	0	ENST00000376406.3:c.5710C>T	p.Arg1904Trp	p.R1904W	ENST00000376406	NM_014641.2	1904	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	89	376	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0029808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	79	473	0				ENST00000310581	NM_198253.2																																																																																
MGA	0	MSKCC	GRCh37	15	42058361	42058361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	51	269	0	ENST00000219905.7:c.8081C>T	p.Ser2694Phe	p.S2694F	ENST00000219905	NM_001164273.1	2694	tCc/tTc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367317	50367317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	73	349	0	ENST00000331340.3:c.124G>A	p.Gly42Arg	p.G42R	ENST00000331340	NM_006060.4	42	Gga/Aga																																																																														
SPEN	0	MSKCC	GRCh37	1	16259967	16259967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	67	550	1	ENST00000375759.3:c.7232C>T	p.Ser2411Leu	p.S2411L	ENST00000375759	NM_015001.2	2411	tCg/tTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212295789	212295789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	68	424	2	ENST00000342788.4:c.2524C>T	p.Arg842Trp	p.R842W	ENST00000342788	NM_005235.2	842	Cgg/Tgg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851651	134851651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	57	400	2	ENST00000398015.3:c.1057G>A	p.Asp353Asn	p.D353N	ENST00000398015	NM_004441.4	353	Gat/Aat																																																																														
KDR	0	MSKCC	GRCh37	4	55976903	55976903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	72	432	0	ENST00000263923.4:c.1009G>A	p.Glu337Lys	p.E337K	ENST00000263923	NM_002253.2	337	Gaa/Aaa																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032246	26032246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	22	198	0	ENST00000244661.2:c.43A>G	p.Lys15Glu	p.K15E	ENST00000244661	NM_003537.3	15	Aaa/Gaa																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137271	64137271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	152	670	0	ENST00000334205.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000334205	NM_003942.2	568	aCg/aTg																																																																														
RNF43	0	MSKCC	GRCh37	17	56448295	56448295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	147	577	0	ENST00000407977.2:c.352C>A	p.Pro118Thr	p.P118T	ENST00000407977		118	Ccc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0029814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	63	335	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	199	667	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
NF1	0	MSKCC	GRCh37	17	29663669	29663669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	39	341	1	ENST00000358273.4:c.6164G>T	p.Cys2055Phe	p.C2055F	ENST00000358273	NM_001042492.2	2055	tGc/tTc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56181757	56181757	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0029814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	87	248	0	ENST00000399503.3:c.3983-2del		p.X1328_splice	ENST00000399503	NM_005921.1	1328																																																																															
ETV1	0	MSKCC	GRCh37	7	13975459	13975459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80157564		P-0029814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	53	283	1	ENST00000405192.2:c.428C>T	p.Thr143Met	p.T143M	ENST00000405192	NM_001163147.1	143	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	37	314	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	43	484	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857275	9857275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	33	409	0	ENST00000330684.3:c.4126C>T	p.Arg1376Cys	p.R1376C	ENST00000330684	NM_001134407.1	1376	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	68	421	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	34	293	0	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332628	153332628	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	49	391	0	ENST00000281708.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000281708	NM_033632.3	110	Gag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425073	49425073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	79	716	0	ENST00000301067.7:c.13415T>C	p.Val4472Ala	p.V4472A	ENST00000301067	NM_003482.3	4472	gTg/gCg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913983	32913984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	55	468	0	ENST00000380152.3:c.5492dup	p.Ser1832IlefsTer2	p.S1832Ifs*2	ENST00000380152		1831	ata/aTta																																																																														
MSH6	0	MSKCC	GRCh37	2	48033405	48033405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	60	448	0	ENST00000234420.5:c.3709G>C	p.Glu1237Gln	p.E1237Q	ENST00000234420	NM_000179.2	1237	Gag/Cag																																																																														
PREX2	0	MSKCC	GRCh37	8	68999981	68999981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	52	516	0	ENST00000288368.4:c.2050G>A	p.Ala684Thr	p.A684T	ENST00000288368	NM_024870.2	684	Gct/Act																																																																														
KLF4	0	MSKCC	GRCh37	9	110249350	110249406	+	inframe_deletion	In_Frame_Del	DEL	GTGTAGGTTTTGCCGCAGCCCGCGTAATCACAAGTGTGGGTGGCGGTCCTTTTCCGG	GTGTAGGTTTTGCCGCAGCCCGCGTAATCACAAGTGTGGGTGGCGGTCCTTTTCCGG	-			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	105	912	0	ENST00000374672.4:c.1167_1223del	p.Arg390_Thr408del	p.R390_T408del	ENST00000374672	NM_004235.4	389	ccCCGGAAAAGGACCGCCACCCACACTTGTGATTACGCGGGCTGCGGCAAAACCTACACa/cca																																																																														
KDM6A	0	MSKCC	GRCh37	X	44913079	44913082	+	frameshift_variant	Frame_Shift_Del	DEL	ATGC	ATGC	-			P-0029819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	68	184	0	ENST00000377967.4:c.756_759del	p.Met252IlefsTer4	p.M252Ifs*4	ENST00000377967	NM_021140.2	252	ATGCat/at																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	164	595	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	170	591	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	98	407	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	168	274	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	124	372	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
RBM10	0	MSKCC	GRCh37	X	47045136	47045136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	173	295	0	ENST00000329236.7:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000329236	NM_001204466.1	715	Cga/Tga																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120464368	120464368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	183	500	1	ENST00000256646.2:c.5278G>A	p.Asp1760Asn	p.D1760N	ENST00000256646	NM_024408.3	1760	Gat/Aat																																																																														
MGA	0	MSKCC	GRCh37	15	41989060	41989060	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	168	580	0	ENST00000219905.7:c.1852C>T	p.Arg618Ter	p.R618*	ENST00000219905	NM_001164273.1	618	Cga/Tga																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43749074	43749074	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	235	645	0	ENST00000382044.4:c.1732C>T	p.Gln578Ter	p.Q578*	ENST00000382044	NM_001141980.1	578	Cag/Tag																																																																														
SOX9	0	MSKCC	GRCh37	17	70120223	70120223	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	180	617	0	ENST00000245479.2:c.1225G>T	p.Glu409Ter	p.E409*	ENST00000245479	NM_000346.3	409	Gag/Tag																																																																														
TRAF2	0	MSKCC	GRCh37	9	139814684	139814684	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	116	376	0	ENST00000247668.2:c.679-2A>C		p.X227_splice	ENST00000247668	NM_021138.3	227																																																																															
KDM6A	0	MSKCC	GRCh37	X	44935993	44935993	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0029820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	31	229	0	ENST00000377967.4:c.2754T>A	p.Cys918Ter	p.C918*	ENST00000377967	NM_021140.2	918	tgT/tgA																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	348	384	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	131	248	1	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	215	263	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	34	239	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	135	529	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																														
FLCN	0	MSKCC	GRCh37	17	17125941	17125941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	149	503	0	ENST00000285071.4:c.653G>A	p.Arg218His	p.R218H	ENST00000285071	NM_144997.5	218	cGt/cAt																																																																														
IGF2	0	MSKCC	GRCh37	11	2154868	2154868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	142	641	0	ENST00000434045.2:c.353G>A	p.Arg118His	p.R118H	ENST00000434045	NM_001127598.1	118	cGc/cAc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554363	63555385	+	splice_acceptor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	TGGTATCCTTCAGGTTCATCTGCCTGAATCCATTGCAGGCAAACCAGAAGTCTAAGGTATCCACGCATTTCTCCCTCTCCAGGAAAGTTCGGAACAGGTAAGCACCGTCTTGATCGCCCAATAAGGAGTGTAAGGACTTGGTCCACCGGGTCAGAGGGGAATCCGGAGATGCCCGCCCCTCCGGCTCCCCCAACCCATCTTCGTTCCGCCTGGTGTTGGAAGAGACAGGCATGGGTTTGGTGACCTGGCCCTTGCCCACCCCTGGCTGACACGGTGGGGTCTCCCCTTCTTCCCCTGGCACTGGGGGCCGCGGGGCATCCTCACGGAAGCTGCTGCTGGGGTCCGGGAGGCAAGTCACCAACATAGCGCTACTCATGGTGAGGGAGCTCTTCCCACTGAGTCTGGGAATTTTTCTTCTTCCAGTTCCTCTCAGCAATCGGCGTGGTCTCTCTGTCTCTCTCAAGTCAGCAGGGGCTCATCTGAACCTCCTCTCTGGAAAGAAAAGGAAGGGGGGAGGTGGGGAGAGAGAAAAGGGTATTGATCTAATCAAAACCAGATCTACCCAACATCAAAGCAAGAAAGTAAACAGGCTTTTCAACTCCTCAAATTCAAATCAAGCAACCCAGCTATCTGCGAGGTGCTCATCTAAAGTATCAGGCGCTGCTTTTCAAAAGCGAAATCTGAGCTCCCTGCACACTTTTCGGGGTTGGGGGTGGGAGGGAGCTGTTGGGAAAGAGGCGGGGAAGGTGAGAGGAAGGCAAGAGCTGGGGACGGCAGGGGGACACTGGAGGTGTAAGACACAACCTTCCAAAAACCCACTCGGCCAGGGCGCACGCAGGGCAGCTCAGCCCGCGCCTCGCCTTCCCTCCCTTCCCCTCCCCCGATACCATCAACTCCAAAAAGGCGCACTCCCAGCCGCTAGGCTGTGTGCAGGTGAAACCAATTTCGGTATATTTCCCCACTCGGCCCTGCACAGATAACTCGAGCTCCAAACGTGCCCTTCCCCGGCATCTGGTTCCCATT	TGGTATCCTTCAGGTTCATCTGCCTGAATCCATTGCAGGCAAACCAGAAGTCTAAGGTATCCACGCATTTCTCCCTCTCCAGGAAAGTTCGGAACAGGTAAGCACCGTCTTGATCGCCCAATAAGGAGTGTAAGGACTTGGTCCACCGGGTCAGAGGGGAATCCGGAGATGCCCGCCCCTCCGGCTCCCCCAACCCATCTTCGTTCCGCCTGGTGTTGGAAGAGACAGGCATGGGTTTGGTGACCTGGCCCTTGCCCACCCCTGGCTGACACGGTGGGGTCTCCCCTTCTTCCCCTGGCACTGGGGGCCGCGGGGCATCCTCACGGAAGCTGCTGCTGGGGTCCGGGAGGCAAGTCACCAACATAGCGCTACTCATGGTGAGGGAGCTCTTCCCACTGAGTCTGGGAATTTTTCTTCTTCCAGTTCCTCTCAGCAATCGGCGTGGTCTCTCTGTCTCTCTCAAGTCAGCAGGGGCTCATCTGAACCTCCTCTCTGGAAAGAAAAGGAAGGGGGGAGGTGGGGAGAGAGAAAAGGGTATTGATCTAATCAAAACCAGATCTACCCAACATCAAAGCAAGAAAGTAAACAGGCTTTTCAACTCCTCAAATTCAAATCAAGCAACCCAGCTATCTGCGAGGTGCTCATCTAAAGTATCAGGCGCTGCTTTTCAAAAGCGAAATCTGAGCTCCCTGCACACTTTTCGGGGTTGGGGGTGGGAGGGAGCTGTTGGGAAAGAGGCGGGGAAGGTGAGAGGAAGGCAAGAGCTGGGGACGGCAGGGGGACACTGGAGGTGTAAGACACAACCTTCCAAAAACCCACTCGGCCAGGGCGCACGCAGGGCAGCTCAGCCCGCGCCTCGCCTTCCCTCCCTTCCCCTCCCCCGATACCATCAACTCCAAAAAGGCGCACTCCCAGCCGCTAGGCTGTGTGCAGGTGAAACCAATTTCGGTATATTTCCCCACTCGGCCCTGCACAGATAACTCGAGCTCCAAACGTGCCCTTCCCCGGCATCTGGTTCCCATT	-			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	114	579	0	ENST00000307078.5:c.-116-529_378del		p.X39_splice	ENST00000307078	NM_004655.3	39																																																																															
EP300	0	MSKCC	GRCh37	22	41564451	41564451	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	145	246	0	ENST00000263253.7:c.3875-2A>T		p.X1292_splice	ENST00000263253	NM_001429.3	1292																																																																															
SETD2	0	MSKCC	GRCh37	3	47103652	47103652	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	49	267	0	ENST00000409792.3:c.6293+1G>A		p.X2098_splice	ENST00000409792	NM_014159.6	2098																																																																															
FAT1	0	MSKCC	GRCh37	4	187542205	187542205	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	76	363	0	ENST00000441802.2:c.5535del	p.Phe1845LeufsTer21	p.F1845Lfs*21	ENST00000441802	NM_005245.3	1845	ttT/tt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	257	563	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	124	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	143	335	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222886	5222886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	168	509	3	ENST00000357368.4:c.2917G>A	p.Gly973Ser	p.G973S	ENST00000357368	NM_002850.3	973	Ggt/Agt																																																																														
APC	0	MSKCC	GRCh37	5	112174973	112174973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	102	217	1	ENST00000257430.4:c.3682C>T	p.Gln1228Ter	p.Q1228*	ENST00000257430	NM_000038.5	1228	Cag/Tag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916922	178916924	+	inframe_deletion	In_Frame_Del	DEL	ACC	ACC	-			P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	187	475	3	ENST00000263967.3:c.310_312del	p.Pro104del	p.P104del	ENST00000263967	NM_006218.2	103	gaACCa/gaa																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411798	63411798	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	295	394	0	ENST00000330258.3:c.1369C>T	p.Gln457Ter	p.Q457*	ENST00000330258	NM_152424.3	457	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	104	432	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	168	582	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928226	178928226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	42	334	0	ENST00000263967.3:c.1412C>T	p.Pro471Leu	p.P471L	ENST00000263967	NM_006218.2	471	cCa/cTa																																																																														
FLT4	0	MSKCC	GRCh37	5	180038349	180038349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	283	513	1	ENST00000261937.6:c.3668G>A	p.Arg1223His	p.R1223H	ENST00000261937	NM_182925.4	1223	cGc/cAc																																																																														
STK11	0	MSKCC	GRCh37	19	1220718	1220718	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	146	563	0	ENST00000326873.7:c.734+2T>A		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																															
MYOD1	0	MSKCC	GRCh37	11	17741472	17741472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	189	658	0	ENST00000250003.3:c.143C>T	p.Pro48Leu	p.P48L	ENST00000250003	NM_002478.4	48	cCg/cTg																																																																														
PREX2	0	MSKCC	GRCh37	8	69129867	69129867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	56	206	0	ENST00000288368.4:c.4621A>G	p.Thr1541Ala	p.T1541A	ENST00000288368	NM_024870.2	1541	Acg/Gcg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	144	403	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0029824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	100	523	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	113	638	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	105	409	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11130342	11130342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	35	555	1	ENST00000344626.4:c.2581G>A	p.Glu861Lys	p.E861K	ENST00000344626	NM_003072.3	861	Gag/Aag																																																																														
BTK	0	MSKCC	GRCh37	X	100611089	100611089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	30	606	0	ENST00000308731.7:c.1517G>T	p.Cys506Phe	p.C506F	ENST00000308731	NM_000061.2	506	tGt/tTt																																																																														
FGF4	0	MSKCC	GRCh37	11	69589843	69589843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	18	53	0	ENST00000168712.1:c.10C>A	p.Pro4Thr	p.P4T	ENST00000168712	NM_002007.2	4	Ccc/Acc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738808	145738808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	36	739	1	ENST00000428558.2:c.2257C>T	p.Arg753Trp	p.R753W	ENST00000428558	NM_004260.3	753	Cgg/Tgg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70980488	70980488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	33	611	0	ENST00000276594.2:c.889G>A	p.Gly297Arg	p.G297R	ENST00000276594	NM_024504.3	297	Gga/Aga																																																																														
DDR2	0	MSKCC	GRCh37	1	162748369	162748369	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	52	264	2	ENST00000367921.3:c.2284-1G>T		p.X762_splice	ENST00000367921	NM_006182.2	762																																																																															
GATA3	0	MSKCC	GRCh37	10	8111520	8111520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	30	488	0	ENST00000346208.3:c.1006C>A	p.Pro336Thr	p.P336T	ENST00000346208		336	Cct/Act																																																																														
IGF2	0	MSKCC	GRCh37	11	2154780	2154780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	31	750	0	ENST00000434045.2:c.441G>C	p.Glu147Asp	p.E147D	ENST00000434045	NM_001127598.1	147	gaG/gaC																																																																														
FGF3	0	MSKCC	GRCh37	11	69633518	69633518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	16	259	1	ENST00000334134.2:c.184G>A	p.Gly62Ser	p.G62S	ENST00000334134	NM_005247.2	62	Ggc/Agc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948572	71948572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	87	606	0	ENST00000298229.2:c.3284C>T	p.Pro1095Leu	p.P1095L	ENST00000298229	NM_001567.3	1095	cCa/cTa																																																																														
PGR	0	MSKCC	GRCh37	11	100912717	100912717	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	27	355	0	ENST00000325455.5:c.2605C>G	p.Arg869Gly	p.R869G	ENST00000325455	NM_001202474.3	869	Cgt/Ggt																																																																														
TBX3	0	MSKCC	GRCh37	12	115115409	115115409	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	16	486	0	ENST00000257566.3:c.917C>G	p.Thr306Ser	p.T306S	ENST00000257566	NM_016569.3	306	aCt/aGt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43738717	43738717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	23	458	0	ENST00000382044.4:c.2908G>T	p.Asp970Tyr	p.D970Y	ENST00000382044	NM_001141980.1	970	Gat/Tat																																																																														
JAK3	0	MSKCC	GRCh37	19	17945921	17945921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	88	698	0	ENST00000458235.1:c.2018G>T	p.Gly673Val	p.G673V	ENST00000458235	NM_000215.3	673	gGg/gTg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024891	31024891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	65	491	0	ENST00000375687.4:c.4376G>T	p.Ser1459Ile	p.S1459I	ENST00000375687	NM_015338.5	1459	aGc/aTc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252854	36252875	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTCTTCCACTTCGACCGACAAA	CTCTTCCACTTCGACCGACAAA	-			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	21	307	0	ENST00000300305.3:c.487_508del	p.Phe163GlyfsTer6	p.F163Gfs*6	ENST00000300305		163	TTTGTCGGTCGAAGTGGAAGAGgg/gg																																																																														
ERG	0	MSKCC	GRCh37	21	39817408	39817408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	18	405	0	ENST00000288319.7:c.155C>T	p.Pro52Leu	p.P52L	ENST00000288319	NM_182918.3	52	cCt/cTt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670633	134670633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	27	576	0	ENST00000398015.3:c.544G>T	p.Ala182Ser	p.A182S	ENST00000398015	NM_004441.4	182	Gcc/Tcc																																																																														
FAT1	0	MSKCC	GRCh37	4	187530998	187530998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	41	417	0	ENST00000441802.2:c.10025C>T	p.Thr3342Ile	p.T3342I	ENST00000441802	NM_005245.3	3342	aCa/aTa																																																																														
APC	0	MSKCC	GRCh37	5	112177860	112177860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	28	320	0	ENST00000257430.4:c.6569G>T	p.Gly2190Val	p.G2190V	ENST00000257430	NM_000038.5	2190	gGa/gTa																																																																														
INHBA	0	MSKCC	GRCh37	7	41739644	41739644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	32	521	0	ENST00000242208.4:c.329G>T	p.Arg110Met	p.R110M	ENST00000242208	NM_002192.2	110	aGg/aTg																																																																														
PREX2	0	MSKCC	GRCh37	8	69104720	69104720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	17	375	0	ENST00000288368.4:c.4564G>T	p.Gly1522Cys	p.G1522C	ENST00000288368	NM_024870.2	1522	Ggc/Tgc																																																																														
GATA1	0	MSKCC	GRCh37	X	48650523	48650523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	28	733	0	ENST00000376670.3:c.493G>T	p.Gly165Cys	p.G165C	ENST00000376670	NM_002049.3	165	Ggc/Tgc																																																																														
AMER1	0	MSKCC	GRCh37	X	63410193	63410193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	27	552	0	ENST00000330258.3:c.2974G>C	p.Ala992Pro	p.A992P	ENST00000330258	NM_152424.3	992	Gca/Cca																																																																														
MED12	0	MSKCC	GRCh37	X	70343504	70343504	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	45	450	0	ENST00000374080.3:c.1678G>C	p.Ala560Pro	p.A560P	ENST00000374080		560	Gct/Cct																																																																														
MED12	0	MSKCC	GRCh37	X	70357627	70357627	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	63	716	0	ENST00000374080.3:c.5878G>C	p.Ala1960Pro	p.A1960P	ENST00000374080		1960	Gca/Cca																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858051	152858051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	33	433	1	ENST00000406277.2:c.564C>A	p.His188Gln	p.H188Q	ENST00000406277	NM_152274.4	188	caC/caA																																																																														
KRAS	0	MSKCC	GRCh37	12	25398262	25398262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	120	339	0	ENST00000256078.4:c.57G>C	p.Leu19Phe	p.L19F	ENST00000256078	NM_033360.2	19	ttG/ttC																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	69	276	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	95	199	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457279	67457279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	70	484	0	ENST00000327367.4:c.253C>T	p.His85Tyr	p.H85Y	ENST00000327367	NM_005902.3	85	Cat/Tat																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473654	67473654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	116	411	0	ENST00000327367.4:c.734G>A	p.Gly245Glu	p.G245E	ENST00000327367	NM_005902.3	245	gGg/gAg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67479756	67479756	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	58	413	0	ENST00000327367.4:c.1063T>C	p.Ser355Pro	p.S355P	ENST00000327367	NM_005902.3	355	Tcg/Ccg																																																																														
SLX4	0	MSKCC	GRCh37	16	3639657	3639657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	176	651	1	ENST00000294008.3:c.3982G>A	p.Val1328Ile	p.V1328I	ENST00000294008	NM_032444.2	1328	Gtc/Atc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368200	45368200	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0029828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	64	224	0	ENST00000262160.6:c.1402T>A	p.Ter468LysextTer8	p.*468Kext*8	ENST00000262160	NM_005901.5	468	Taa/Aaa																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	404	412	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	94	279	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
BABAM1	0	MSKCC	GRCh37	19	17384726	17384726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	186	636	0	ENST00000359435.4:c.358G>A	p.Ala120Thr	p.A120T	ENST00000359435	NM_001033549.1	120	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7578432	7578445	+	frameshift_variant	Frame_Shift_Del	DEL	TGACTGCTTGTAGA	TGACTGCTTGTAGA	-			P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	396	613	0	ENST00000269305.4:c.485_498del	p.Ile162ThrfsTer14	p.I162Tfs*14	ENST00000269305	NM_001126112.2	162	aTCTACAAGCAGTCA/a																																																																														
SMAD2	0	MSKCC	GRCh37	18	45422921	45422922	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	101	298	0	ENST00000262160.6:c.206dup	p.Asn69LysfsTer3	p.N69Kfs*3	ENST00000262160	NM_005901.5	69	aac/aaAc																																																																														
TCF3	0	MSKCC	GRCh37	19	1650241	1650241	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	188	578	0	ENST00000344749.5:c.7C>T	p.Gln3Ter	p.Q3*	ENST00000344749	NM_001136139.2	3	Cag/Tag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5239014	5239015	+	missense_variant	Missense_Mutation	DNP	CC	CC	GG			P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	192	678	2	ENST00000357368.4:c.1764_1765inv	p.Glu589Gln	p.E589Q	ENST00000357368	NM_002850.3	588	acGGag/acCCag																																																																														
APC	0	MSKCC	GRCh37	5	112175684	112175685	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0029834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	146	265	0	ENST00000257430.4:c.4394_4395insCG	p.Gly1466ValfsTer8	p.G1466Vfs*8	ENST00000257430	NM_000038.5	1465	agt/aGCgt																																																																														
GNA11	0	MSKCC	GRCh37	19	3121047	3121047	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	79	582	0	ENST00000078429.4:c.950A>G	p.Asn317Ser	p.N317S	ENST00000078429	NM_002067.2	317	aAc/aGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578179	7578182	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAGG	CAGG	-			P-0029835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	224	610	2	ENST00000269305.4:c.667_670del	p.Pro223ArgfsTer23	p.P223Rfs*23	ENST00000269305	NM_001126112.2	223	CCTGag/ag																																																																														
RAF1	0	MSKCC	GRCh37	3	12645666	12645666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	36	178	0	ENST00000251849.4:c.803C>T	p.Thr268Ile	p.T268I	ENST00000251849	NM_002880.3	268	aCc/aTc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467812	50467812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	40	398	0	ENST00000331340.3:c.1047G>C	p.Gln349His	p.Q349H	ENST00000331340	NM_006060.4	349	caG/caC																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	141	300	1	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151836786	151836787	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTTG			P-0029836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	160	385	0	ENST00000262189.6:c.14430_14433dup	p.Arg4812GlnfsTer8	p.R4812Qfs*8	ENST00000262189	NM_170606.2	4811	-/CAAC																																																																														
GNA11	0	MSKCC	GRCh37	19	3115013	3115013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	10	700	1	ENST00000078429.4:c.548G>A	p.Arg183His	p.R183H	ENST00000078429	NM_002067.2	183	cGc/cAc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945406	151945406	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	24	530	1	ENST00000262189.6:c.2113G>T	p.Glu705Ter	p.E705*	ENST00000262189	NM_170606.2	705	Gaa/Taa																																																																														
PMS1	0	MSKCC	GRCh37	2	190728619	190728619	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	209	502	0	ENST00000441310.2:c.2007A>T	p.Lys669Asn	p.K669N	ENST00000441310	NM_000534.4	669	aaA/aaT																																																																														
GATA2	2624	MSKCC	GRCh37	3	128204622	128204623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	155	577	0	ENST00000341105.2:c.818dup	p.Pro274ThrfsTer8	p.P274Tfs*8	ENST00000341105	NM_032638.4	273	gga/ggGa																																																																														
TP53	0	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	47	699	0	ENST00000269305.4:c.470T>A	p.Val157Asp	p.V157D	ENST00000269305	NM_001126112.2	157	gTc/gAc																																																																														
TET1	0	MSKCC	GRCh37	10	70332801	70332801	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	143	454	0	ENST00000373644.4:c.706A>G	p.Thr236Ala	p.T236A	ENST00000373644	NM_030625.2	236	Acc/Gcc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720828	89720828	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	148	312	1	ENST00000371953.3:c.981del	p.Ala328GlnfsTer16	p.A328Qfs*16	ENST00000371953	NM_000314.4	327	Aaa/aa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1961228	1961228	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	54	378	0	ENST00000382891.5:c.3016T>G	p.Tyr1006Asp	p.Y1006D	ENST00000382891	NM_133335.3	1006	Tac/Gac																																																																														
FAT1	0	MSKCC	GRCh37	4	187540752	187540752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	41	267	1	ENST00000441802.2:c.6988C>T	p.His2330Tyr	p.H2330Y	ENST00000441802	NM_005245.3	2330	Cat/Tat																																																																														
FAT1	0	MSKCC	GRCh37	4	187540781	187541624	+	frameshift_variant	Frame_Shift_Del	DEL	TATGAGATTCCTCTATTTGGTTCTGAATCAGAATCGGTGGCTCTAACTTGAACAACAGACGTTCCAATTACAGATGCCTCAGACAGGGTCACCGCATAAGACTGCTGAGCAAACACAGGAGGGTTATCATTGATGTCGTCTACTATGATGTCCACAAATACTTCAGCATGAGCGCCCGTCAAGGAGTCAGTTGCGCGTATGCTCAGCTTATATGCCGGGTGGGCCTCAAAGTCCAGAGGAGCTATGACATTGATAACTCCAGTATTGAAGTTAATAGTGAACTGGCTGAAAGGGTCTCCGTCTGTGATGCTGTAGAACACTTTCAGGCCTTCCGGGCTGTTAGCCTGCACGTGGACCACAGGGCTGTGCACCTGGATGCTCTCTGCAATCTCTGCACTGTAGAAAGGTTTTTCAAACACAGGCATGGCTTTATTCATGACAGTGATCGGAACGATAACTTCCGCTGAAAAGGCCGGGTTCCCTCCATCTTTTGCAACCACTGTAACAAGATATTCTTTATTTAAGGTGTCAAGCTCAAATTGCTTTTTCAGTGAAATTTCACCCAAGGGTCCAATTTGAAAGTGTTCATGATGTTCCTTGAGGTAGTAATGCACTTCCCCGTTTCTGCCACTGTCTCTGTCTACAGCAGTGACATAGCGAATGACATGGCCCACCTCAGTGTCCACTTTAACAACGGCGTAGTAGGGAAGGTTGACAAACACCGGCGCATTATCATTTTGGTCTTCTACAATGACCTTCACGACAACGTGGGCCACTGCAGAAGGCTTATGTTCCTCTGTCACTTCTACAACCACATCAAACGCCTCCTGCTGCTCACGATCGA	TATGAGATTCCTCTATTTGGTTCTGAATCAGAATCGGTGGCTCTAACTTGAACAACAGACGTTCCAATTACAGATGCCTCAGACAGGGTCACCGCATAAGACTGCTGAGCAAACACAGGAGGGTTATCATTGATGTCGTCTACTATGATGTCCACAAATACTTCAGCATGAGCGCCCGTCAAGGAGTCAGTTGCGCGTATGCTCAGCTTATATGCCGGGTGGGCCTCAAAGTCCAGAGGAGCTATGACATTGATAACTCCAGTATTGAAGTTAATAGTGAACTGGCTGAAAGGGTCTCCGTCTGTGATGCTGTAGAACACTTTCAGGCCTTCCGGGCTGTTAGCCTGCACGTGGACCACAGGGCTGTGCACCTGGATGCTCTCTGCAATCTCTGCACTGTAGAAAGGTTTTTCAAACACAGGCATGGCTTTATTCATGACAGTGATCGGAACGATAACTTCCGCTGAAAAGGCCGGGTTCCCTCCATCTTTTGCAACCACTGTAACAAGATATTCTTTATTTAAGGTGTCAAGCTCAAATTGCTTTTTCAGTGAAATTTCACCCAAGGGTCCAATTTGAAAGTGTTCATGATGTTCCTTGAGGTAGTAATGCACTTCCCCGTTTCTGCCACTGTCTCTGTCTACAGCAGTGACATAGCGAATGACATGGCCCACCTCAGTGTCCACTTTAACAACGGCGTAGTAGGGAAGGTTGACAAACACCGGCGCATTATCATTTTGGTCTTCTACAATGACCTTCACGACAACGTGGGCCACTGCAGAAGGCTTATGTTCCTCTGTCACTTCTACAACCACATCAAACGCCTCCTGCTGCTCACGATCGA	-			P-0029843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	45	254	0	ENST00000441802.2:c.6116_6959del	p.Phe2039SerfsTer16	p.F2039Sfs*16	ENST00000441802	NM_005245.3	2039	tTCGATCGTGAGCAGCAGGAGGCGTTTGATGTGGTTGTAGAAGTGACAGAGGAACATAAGCCTTCTGCAGTGGCCCACGTTGTCGTGAAGGTCATTGTAGAAGACCAAAATGATAATGCGCCGGTGTTTGTCAACCTTCCCTACTACGCCGTTGTTAAAGTGGACACTGAGGTGGGCCATGTCATTCGCTATGTCACTGCTGTAGACAGAGACAGTGGCAGAAACGGGGAAGTGCATTACTACCTCAAGGAACATCATGAACACTTTCAAATTGGACCCTTGGGTGAAATTTCACTGAAAAAGCAATTTGAGCTTGACACCTTAAATAAAGAATATCTTGTTACAGTGGTTGCAAAAGATGGAGGGAACCCGGCCTTTTCAGCGGAAGTTATCGTTCCGATCACTGTCATGAATAAAGCCATGCCTGTGTTTGAAAAACCTTTCTACAGTGCAGAGATTGCAGAGAGCATCCAGGTGCACAGCCCTGTGGTCCACGTGCAGGCTAACAGCCCGGAAGGCCTGAAAGTGTTCTACAGCATCACAGACGGAGACCCTTTCAGCCAGTTCACTATTAACTTCAATACTGGAGTTATCAATGTCATAGCTCCTCTGGACTTTGAGGCCCACCCGGCATATAAGCTGAGCATACGCGCAACTGACTCCTTGACGGGCGCTCATGCTGAAGTATTTGTGGACATCATAGTAGACGACATCAATGATAACCCTCCTGTGTTTGCTCAGCAGTCTTATGCGGTGACCCTGTCTGAGGCATCTGTAATTGGAACGTCTGTTGTTCAAGTTAGAGCCACCGATTCTGATTCAGAACCAAATAGAGGAATCTCATAc/tc																																																																														
LATS1	0	MSKCC	GRCh37	6	149997439	149997440	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0029843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	65	504	2	ENST00000253339.5:c.2839_2840delinsAT	p.Gln947Ile	p.Q947I	ENST00000253339		947	CAa/ATa																																																																														
FAT1	0	MSKCC	GRCh37	4	187554840	187554840	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0029848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	139	282	0	ENST00000441802.2:c.4321C>T	p.Gln1441Ter	p.Q1441*	ENST00000441802	NM_005245.3	1441	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	285	536	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022277	31022277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	75	325	0	ENST00000375687.4:c.1762C>T	p.Gln588Ter	p.Q588*	ENST00000375687	NM_015338.5	588	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0029848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	368	459	0				ENST00000310581	NM_198253.2																																																																																
CSDE1	0	MSKCC	GRCh37	1	115282512	115282512	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0029848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	164	278	0	ENST00000438362.2:c.139-1G>C		p.X47_splice	ENST00000438362	NM_001242891.1	47																																																																															
FGF3	0	MSKCC	GRCh37	11	69631144	69631144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	548	655	1	ENST00000334134.2:c.268G>T	p.Gly90Cys	p.G90C	ENST00000334134	NM_005247.2	90	Ggt/Tgt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900318	3900318	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	140	493	0	ENST00000262367.5:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000262367	NM_004380.2	260	Cag/Tag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198274705	198274705	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	87	323	0	ENST00000335508.6:c.693A>C	p.Arg231Ser	p.R231S	ENST00000335508	NM_012433.2	231	agA/agC																																																																														
CASP8	0	MSKCC	GRCh37	2	202136256	202136256	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	116	440	0	ENST00000358485.4:c.500T>G	p.Ile167Ser	p.I167S	ENST00000358485	NM_001080125.1	167	aTt/aGt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729879	30729880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	86	234	0	ENST00000359013.4:c.1479dup	p.Asp494ArgfsTer3	p.D494Rfs*3	ENST00000359013	NM_001024847.2	492	gta/gtAa																																																																														
MST1R	0	MSKCC	GRCh37	3	49936067	49936067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	195	723	2	ENST00000296474.3:c.1603C>T	p.Arg535Cys	p.R535C	ENST00000296474	NM_002447.2	535	Cgt/Tgt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240805	53240805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	112	236	1	ENST00000375401.3:c.1275C>A	p.Phe425Leu	p.F425L	ENST00000375401	NM_004187.3	425	ttC/ttA																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	174	428	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46246457	46246457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	39	242	0	ENST00000334344.6:c.4551G>C	p.Arg1517Ser	p.R1517S	ENST00000334344	NM_152641.2	1517	agG/agC																																																																														
RASA1	0	MSKCC	GRCh37	5	86674212	86674212	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0029849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	128	202	0	ENST00000274376.6:c.2345-1G>C		p.X782_splice	ENST00000274376	NM_002890.2	782																																																																															
FOXA1	0	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	147	521	1	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																														
CDH1	0	MSKCC	GRCh37	16	68856025	68856026	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	295	409	0	ENST00000261769.5:c.1834dup	p.Ile612AsnfsTer5	p.I612Nfs*5	ENST00000261769	NM_004360.3	611	-/A																																																																														
PTPRD	0	MSKCC	GRCh37	9	8460410	8460410	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0029850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	45	177	0	ENST00000356435.5:c.3875+1G>T		p.X1292_splice	ENST00000356435		1292																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0029851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	84	401	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	48	237	0	ENST00000342988.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000342988	NM_005359.5	493	gAt/gGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	118	615	0	ENST00000269305.4:c.470T>A	p.Val157Asp	p.V157D	ENST00000269305	NM_001126112.2	157	gTc/gAc																																																																														
MGA	0	MSKCC	GRCh37	15	42019604	42019605	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0029851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	64	317	1	ENST00000219905.7:c.3657_3657+1delinsTT		p.X1219_splice	ENST00000219905	NM_001164273.1	1219																																																																															
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	138	363	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0029868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	138	424	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	39	480	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	34	393	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212543828	212543828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	35	329	1	ENST00000342788.4:c.1571G>A	p.Arg524His	p.R524H	ENST00000342788	NM_005235.2	524	cGc/cAc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482874	67482874	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0029870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	31	336	0	ENST00000327367.4:c.1278G>C	p.Ter426TyrextTer6	p.*426Yext*6	ENST00000327367	NM_005902.3	426	taG/taC																																																																														
CASP8	0	MSKCC	GRCh37	2	202149778	202149778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	52	449	0	ENST00000358485.4:c.1219C>G	p.Leu407Val	p.L407V	ENST00000358485	NM_001080125.1	407	Ctt/Gtt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0029874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	111	209	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	146	288	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267710	198267710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	134	303	0	ENST00000335508.6:c.1769G>T	p.Arg590Ile	p.R590I	ENST00000335508	NM_012433.2	590	aGa/aTa																																																																														
GLI1	0	MSKCC	GRCh37	12	57863241	57863241	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	107	384	0	ENST00000228682.2:c.1336T>A	p.Ser446Thr	p.S446T	ENST00000228682	NM_005269.2	446	Tca/Aca																																																																														
KDR	0	MSKCC	GRCh37	4	55976651	55976651	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2034964		P-0029874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	132	432	0	ENST00000263923.4:c.1174G>A	p.Asp392Asn	p.D392N	ENST00000263923	NM_002253.2	392	Gac/Aac																																																																														
RAD50	0	MSKCC	GRCh37	5	131924426	131924426	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	164	270	0	ENST00000265335.6:c.1099A>T	p.Arg367Ter	p.R367*	ENST00000265335		367	Aga/Tga																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459672	149459672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	83	477	0	ENST00000286301.3:c.535G>T	p.Ala179Ser	p.A179S	ENST00000286301	NM_005211.3	179	Gcc/Tcc																																																																														
ARAF	0	MSKCC	GRCh37	X	47430341	47430341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	172	530	0	ENST00000377045.4:c.1616C>T	p.Pro539Leu	p.P539L	ENST00000377045	NM_001654.4	539	cCc/cTc																																																																														
RASA1	0	MSKCC	GRCh37	5	86627164	86627170	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGTGGTA	GGTGGTA	-			P-0029874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	22	138	0	ENST00000274376.6:c.540-1_545del		p.X180_splice	ENST00000274376	NM_002890.2	180																																																																															
TET1	0	MSKCC	GRCh37	10	70332816	70332816	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	230	814	0	ENST00000373644.4:c.721A>G	p.Lys241Glu	p.K241E	ENST00000373644	NM_030625.2	241	Aaa/Gaa																																																																														
MEN1	0	MSKCC	GRCh37	11	64577447	64577447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	243	743	0	ENST00000337652.1:c.135G>C	p.Glu45Asp	p.E45D	ENST00000337652	NM_130803.2	45	gaG/gaC																																																																														
MAX	0	MSKCC	GRCh37	14	65560535	65560535	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0029916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	120	409	1	ENST00000358664.4:c.64-2A>G		p.X22_splice	ENST00000358664	NM_002382.4	22																																																																															
MEN1	0	MSKCC	GRCh37	11	64577222	64577224	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0029917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	273	709	0	ENST00000337652.1:c.358_360del	p.Lys120del	p.K120del	ENST00000337652	NM_130803.2	120	AAG/-																																																																														
AMER1	0	MSKCC	GRCh37	X	63410486	63410486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	205	632	0	ENST00000330258.3:c.2681G>A	p.Arg894His	p.R894H	ENST00000330258	NM_152424.3	894	cGc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89685268	89685268	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0029917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	52	109	0	ENST00000371953.3:c.165-2A>T		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																															
PTEN	0	MSKCC	GRCh37	10	89711892	89711892	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	141	417	0	ENST00000371953.3:c.510T>A	p.Ser170Arg	p.S170R	ENST00000371953	NM_000314.4	170	agT/agA																																																																														
PGR	0	MSKCC	GRCh37	11	100933460	100933464	+	frameshift_variant	Frame_Shift_Del	DEL	TATTG	TATTG	AATA			P-0029917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	115	280	0	ENST00000325455.5:c.1926_1930delinsTATT	p.Asn643IlefsTer6	p.N643Ifs*6	ENST00000325455	NM_001202474.3	642	ttCAATAaa/ttTATTaa																																																																														
MYCN	0	MSKCC	GRCh37	2	16085613	16085621	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGATGATGA	AGATGATGA	-			P-0029917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	158	465	0	ENST00000281043.3:c.801_809del		p.X267_splice	ENST00000281043	NM_005378.4	267																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67589615	67589616	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTC			P-0029917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	161	174	0	ENST00000274335.5:c.1380_1382dup	p.Arg461dup	p.R461dup	ENST00000274335		461	agt/aGTCgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	148	556	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	97	305	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	34	480	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
PTPN11	0	MSKCC	GRCh37	12	112888189	112888189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	32	593	0	ENST00000351677.2:c.205G>A	p.Glu69Lys	p.E69K	ENST00000351677	NM_002834.3	69	Gag/Aag																																																																														
TSC1	0	MSKCC	GRCh37	9	135779187	135779187	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	204	408	0	ENST00000298552.3:c.2059G>T	p.Glu687Ter	p.E687*	ENST00000298552	NM_001162426.1	687	Gag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426955	49426955	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	43	519	0	ENST00000301067.7:c.11533C>T	p.Gln3845Ter	p.Q3845*	ENST00000301067	NM_003482.3	3845	Cag/Tag																																																																														
ARID5B	0	MSKCC	GRCh37	10	63662083	63662083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	133	359	0	ENST00000279873.7:c.187G>C	p.Glu63Gln	p.E63Q	ENST00000279873	NM_032199.2	63	Gag/Cag																																																																														
ETV6	0	MSKCC	GRCh37	12	12006384	12006384	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	137	436	0	ENST00000396373.4:c.352C>T	p.Gln118Ter	p.Q118*	ENST00000396373	NM_001987.4	118	Cag/Tag																																																																														
TSHR	0	MSKCC	GRCh37	14	81563044	81563044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	104	337	0	ENST00000298171.2:c.607G>C	p.Asp203His	p.D203H	ENST00000298171	NM_000369.2	203	Gat/Cat																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43767830	43767830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	207	614	0	ENST00000382044.4:c.1018C>T	p.Pro340Ser	p.P340S	ENST00000382044	NM_001141980.1	340	Cct/Tct																																																																														
NF1	0	MSKCC	GRCh37	17	29654788	29654788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	111	361	0	ENST00000358273.4:c.5540C>A	p.Pro1847Gln	p.P1847Q	ENST00000358273	NM_001042492.2	1847	cCa/cAa																																																																														
SMAD2	0	MSKCC	GRCh37	18	45377695	45377695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	68	258	0	ENST00000262160.6:c.734C>T	p.Ser245Phe	p.S245F	ENST00000262160	NM_005901.5	245	tCt/tTt																																																																														
ASXL2	0	MSKCC	GRCh37	2	25978892	25978892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	84	361	0	ENST00000435504.4:c.1031C>T	p.Ser344Leu	p.S344L	ENST00000435504		344	tCa/tTa																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73108264	73108264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	46	147	0	ENST00000356692.5:c.364C>T	p.Leu122Phe	p.L122F	ENST00000356692		122	Ctc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7578429	7578429	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	386	633	0	ENST00000269305.4:c.501delG	p.Gln167HisfsTer3	p.Q167Hfs*3	ENST00000269305	NM_001126112.2	167	caG/ca																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50483719	50483719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	250	401	0	ENST00000394963.4:c.824C>T	p.Pro275Leu	p.P275L	ENST00000394963	NM_003076.4	275	cCg/cTg																																																																														
GLI1	0	MSKCC	GRCh37	12	57864815	57864815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	363	620	0	ENST00000228682.2:c.2292C>A	p.Asn764Lys	p.N764K	ENST00000228682	NM_005269.2	764	aaC/aaA																																																																														
CTCF	0	MSKCC	GRCh37	16	67663336	67663336	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	213	383	0	ENST00000264010.4:c.1739del	p.Pro580GlnfsTer4	p.P580Qfs*4	ENST00000264010	NM_006565.3	579	ggC/gg																																																																														
MSI2	0	MSKCC	GRCh37	17	55704589	55704589	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0029946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	306	562	0	ENST00000284073.2:c.653-1G>A		p.X218_splice	ENST00000284073	NM_138962.2	218																																																																															
ALK	0	MSKCC	GRCh37	2	29449794	29449794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	422	810	0	ENST00000389048.3:c.3061T>C	p.Cys1021Arg	p.C1021R	ENST00000389048	NM_004304.4	1021	Tgc/Cgc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99189300	99189300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	228	375	0	ENST00000074304.5:c.2556G>T	p.Gln852His	p.Q852H	ENST00000074304	NM_001134224.1	852	caG/caT																																																																														
CUL3	0	MSKCC	GRCh37	2	225379395	225379395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	253	567	0	ENST00000264414.4:c.473G>C	p.Arg158Thr	p.R158T	ENST00000264414	NM_003590.4	158	aGg/aCg																																																																														
MLH1	0	MSKCC	GRCh37	3	37048483	37048483	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	168	310	0	ENST00000231790.2:c.382G>A	p.Ala128Thr	p.A128T	ENST00000231790	NM_000249.3	128	Gca/Aca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486050	8486050	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	232	432	1	ENST00000356435.5:c.2767C>T	p.Gln923Ter	p.Q923*	ENST00000356435		923	Caa/Taa																																																																														
ARAF	0	MSKCC	GRCh37	X	47430384	47430384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	337	569	0	ENST00000377045.4:c.1659G>T	p.Gln553His	p.Q553H	ENST00000377045	NM_001654.4	553	caG/caT																																																																														
ATRX	0	MSKCC	GRCh37	X	77041466	77041466	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0029946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	206	396	0	ENST00000373344.5:c.20+2T>C		p.X7_splice	ENST00000373344	NM_000489.3	7																																																																															
BTK	0	MSKCC	GRCh37	X	100613671	100613671	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	222	460	0	ENST00000308731.7:c.908G>T	p.Gly303Val	p.G303V	ENST00000308731	NM_000061.2	303	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	188	606	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	30	391	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
STAG2	0	MSKCC	GRCh37	X	123197044	123197044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	204	409	0	ENST00000218089.9:c.1810C>T	p.Arg604Ter	p.R604*	ENST00000218089	NM_001042749.1	604	Cga/Tga																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11143999	11143999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	219	505	1	ENST00000344626.4:c.3580G>A	p.Gly1194Arg	p.G1194R	ENST00000344626	NM_003072.3	1194	Ggg/Agg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	125	432	0	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																														
FGFR2	0	MSKCC	GRCh37	10	123256219	123256219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	96	395	0	ENST00000358487.5:c.1690G>A	p.Val564Ile	p.V564I	ENST00000358487	NM_000141.4	564	Gtt/Att																																																																														
EP300	0	MSKCC	GRCh37	22	41554496	41554496	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	94	421	1	ENST00000263253.7:c.3582C>A	p.Tyr1194Ter	p.Y1194*	ENST00000263253	NM_001429.3	1194	taC/taA																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839897	27839897	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	143	630	0	ENST00000328488.2:c.197T>C	p.Leu66Pro	p.L66P	ENST00000328488	NM_003533.2	66	cTa/cCa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163360	32163360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	302	758	0	ENST00000375023.3:c.5866C>G	p.Leu1956Val	p.L1956V	ENST00000375023	NM_004557.3	1956	Ctg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0029957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	204	493	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
KMT2A	0	MSKCC	GRCh37	11	118366981	118366981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	91	375	0	ENST00000534358.1:c.5563G>C	p.Asp1855His	p.D1855H	ENST00000534358	NM_005933.3	1855	Gat/Cat																																																																														
ARID2	0	MSKCC	GRCh37	12	46230632	46230632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	217	402	0	ENST00000334344.6:c.881G>T	p.Arg294Ile	p.R294I	ENST00000334344	NM_152641.2	294	aGa/aTa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	181	445	4	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
CDH1	0	MSKCC	GRCh37	16	68853286	68853286	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	232	425	0	ENST00000261769.5:c.1669A>T	p.Lys557Ter	p.K557*	ENST00000261769	NM_004360.3	557	Aag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	92	640	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KIT	0	MSKCC	GRCh37	4	55593613	55593614	+	missense_variant	Missense_Mutation	DNP	TT	TT	AG			P-0029963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	248	376	0	ENST00000288135.5:c.1679_1680delinsAG	p.Val560Glu	p.V560E	ENST00000288135	NM_000222.2	560	gTT/gAG																																																																														
TP53	0	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	218	532	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																														
FGFR2	0	MSKCC	GRCh37	10	123263351	123263355	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGA	GGAGA	-			P-0029964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	83	326	0	ENST00000358487.5:c.1388_1392del	p.Val463GlyfsTer3	p.V463Gfs*3	ENST00000358487	NM_000141.4	463	gTCTCC/g																																																																														
NUP93	0	MSKCC	GRCh37	16	56865774	56865774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	198	260	0	ENST00000308159.5:c.1106A>G	p.Asn369Ser	p.N369S	ENST00000308159	NM_014669.4	369	aAc/aGc																																																																														
BAP1	0	MSKCC	GRCh37	3	52441227	52441228	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0029964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	163	362	1	ENST00000460680.1:c.542_543del	p.Phe181Ter	p.F181*	ENST00000460680	NM_004656.3	181	tTT/t																																																																														
FOXP1	0	MSKCC	GRCh37	3	71021734	71021734	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	179	318	0	ENST00000318789.4:c.1624C>T	p.Gln542Ter	p.Q542*	ENST00000318789	NM_032682.5	542	Caa/Taa																																																																														
RASA1	0	MSKCC	GRCh37	5	86670096	86670211	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAAGGGCAAAACCCAGTATGGTCAGAAGAGTTTGTCTTTGAGTAAGTCTTATTTTATCATTACATTAATCATTTTCTTTTACCATATTGCATTTCTTTCTGTTTTTTTGGTCTCT	GGAAGGGCAAAACCCAGTATGGTCAGAAGAGTTTGTCTTTGAGTAAGTCTTATTTTATCATTACATTAATCATTTTCTTTTACCATATTGCATTTCTTTCTGTTTTTTTGGTCTCT	-			P-0029964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	65	412	0	ENST00000274376.6:c.1894_1934+75del		p.X632_splice	ENST00000274376	NM_002890.2	632																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	259	550	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0029979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	250	298	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
MST1R	0	MSKCC	GRCh37	3	49928834	49928834	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	77	638	1	ENST00000296474.3:c.3532C>T	p.Arg1178Trp	p.R1178W	ENST00000296474	NM_002447.2	1178	Cgg/Tgg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911644	114911644	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0029979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	203	390	0	ENST00000543371.1:c.1161+1G>A		p.X387_splice	ENST00000543371	NM_001198531.1	387																																																																															
PIK3C2G	0	MSKCC	GRCh37	12	18435071	18435071	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	80	325	0	ENST00000266497.5:c.56A>C	p.Tyr19Ser	p.Y19S	ENST00000266497		19	tAt/tCt																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	221	687	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	267	448	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	155	424	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245393	153245393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	203	531	0	ENST00000281708.4:c.1798G>A	p.Asp600Asn	p.D600N	ENST00000281708	NM_033632.3	600	Gat/Aat																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	222	302	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112176008	112176008	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	199	344	0	ENST00000257430.4:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000257430	NM_000038.5	1573	Gaa/Taa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66231728	66231728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	114	413	0	ENST00000273854.3:c.1972G>T	p.Asp658Tyr	p.D658Y	ENST00000273854	NM_004439.5	658	Gat/Tat																																																																														
APC	0	MSKCC	GRCh37	5	112174223	112174223	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	79	372	0	ENST00000257430.4:c.2932C>T	p.Gln978Ter	p.Q978*	ENST00000257430	NM_000038.5	978	Caa/Taa																																																																														
ARID2	0	MSKCC	GRCh37	12	46243362	46243362	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	71	234	0	ENST00000334344.6:c.1716-1G>A		p.X572_splice	ENST00000334344	NM_152641.2	572																																																																															
SOX9	0	MSKCC	GRCh37	17	70120261	70120261	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	228	778	0	ENST00000245479.2:c.1266delC	p.Phe423SerfsTer47	p.F423Sfs*47	ENST00000245479	NM_000346.3	421	agC/ag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467685	66467685	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	106	360	0	ENST00000273854.3:c.584T>G	p.Leu195Arg	p.L195R	ENST00000273854	NM_004439.5	195	cTg/cGg																																																																														
APC	0	MSKCC	GRCh37	5	112102931	112102931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	252	356	0	ENST00000257430.4:c.266C>A	p.Ser89Ter	p.S89*	ENST00000257430	NM_000038.5	89	tCa/tAa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53247013	53247013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	97	595	0	ENST00000375401.3:c.487C>A	p.Pro163Thr	p.P163T	ENST00000375401	NM_004187.3	163	Ccc/Acc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	65	356	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	106	313	0				ENST00000310581	NM_198253.2																																																																																
KMT2D	0	MSKCC	GRCh37	12	49443518	49443518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	25	488	0	ENST00000301067.7:c.3853G>C	p.Glu1285Gln	p.E1285Q	ENST00000301067	NM_003482.3	1285	Gag/Cag																																																																														
STAT5A	0	MSKCC	GRCh37	17	40456361	40456361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	47	428	0	ENST00000345506.4:c.1171G>A	p.Glu391Lys	p.E391K	ENST00000345506	NM_003152.3	391	Gag/Aag																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470606	25470606	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0030022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	101	651	0	ENST00000264709.3:c.868T>G	p.Phe290Val	p.F290V	ENST00000264709	NM_175629.2	290	Ttt/Gtt																																																																														
EPHA7	0	MSKCC	GRCh37	6	94068091	94068091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	57	297	1	ENST00000369303.4:c.871C>A	p.Leu291Ile	p.L291I	ENST00000369303	NM_004440.3	291	Ctt/Att																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23539153	23539153	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0030022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	56	334	0	ENST00000380871.4:c.287-1G>A		p.X96_splice	ENST00000380871	NM_006167.3	96																																																																															
PTCH1	0	MSKCC	GRCh37	9	98242323	98242323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	59	490	0	ENST00000331920.6:c.995G>A	p.Arg332Lys	p.R332K	ENST00000331920	NM_000264.3	332	aGa/aAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	44	582	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	58	492	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
APC	0	MSKCC	GRCh37	5	112154992	112154992	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	98	429	1	ENST00000257430.4:c.1263G>A	p.Trp421Ter	p.W421*	ENST00000257430	NM_000038.5	421	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7578412	7578413	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0030025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	53	469	0	ENST00000269305.4:c.517_518delinsAG	p.Val173Arg	p.V173R	ENST00000269305	NM_001126112.2	173	GTg/AGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0030026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	431	703	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
NF2	0	MSKCC	GRCh37	22	30051652	30051652	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0030026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	44	274	0	ENST00000338641.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000338641	NM_000268.3	196	Cga/Tga																																																																														
KDR	0	MSKCC	GRCh37	4	55981047	55981047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145458680		P-0030026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	98	392	0	ENST00000263923.4:c.652G>A	p.Val218Ile	p.V218I	ENST00000263923	NM_002253.2	218	Gtt/Att																																																																														
FGFR2	0	MSKCC	GRCh37	10	123324007	123324022	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTACTTACTCTTGTT	GTTACTTACTCTTGTT	-			P-0030026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	221	458	0	ENST00000358487.5:c.448_454+9del		p.X150_splice	ENST00000358487	NM_000141.4	150																																																																															
INPPL1	0	MSKCC	GRCh37	11	71945421	71945421	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	80	599	0	ENST00000298229.2:c.2309A>T	p.Tyr770Phe	p.Y770F	ENST00000298229	NM_001567.3	770	tAc/tTc																																																																														
RB1	0	MSKCC	GRCh37	13	48947565	48947787	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTAATGATGATTTTAAATTCAGCAAGTGATCAACCTTCAGAAAATCTGATTTCCTATTTTAACGTAAGCCATATATGAAACATTATTTATTGTAATATCTTGGCAAAGAAACTTGAAATTAAAAGTTAAAGTACTGAGTTCTTTTTAAAATACTAATCTCCTATCTAACATGTAGTTATCCATAATCTTTTCTTGCTTTTTTAATCTTACAAATTATATATT	ATTAATGATGATTTTAAATTCAGCAAGTGATCAACCTTCAGAAAATCTGATTTCCTATTTTAACGTAAGCCATATATGAAACATTATTTATTGTAATATCTTGGCAAAGAAACTTGAAATTAAAAGTTAAAGTACTGAGTTCTTTTTAAAATACTAATCTCCTATCTAACATGTAGTTATCCATAATCTTTTCTTGCTTTTTTAATCTTACAAATTATATATT	-			P-0030026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	89	385	0	ENST00000267163.4:c.1156_1215+163del		p.X386_splice	ENST00000267163	NM_000321.2	386																																																																															
NF1	0	MSKCC	GRCh37	17	29592266	29592266	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0030026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	96	225	1	ENST00000358273.4:c.4744del	p.Glu1582LysfsTer6	p.E1582Kfs*6	ENST00000358273	NM_001042492.2	1582	Gaa/aa																																																																														
EP300	0	MSKCC	GRCh37	22	41568668	41568668	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0030026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	155	306	1	ENST00000263253.7:c.4617+1G>T		p.X1539_splice	ENST00000263253	NM_001429.3	1539																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0030028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	115	379	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
BRD4	0	MSKCC	GRCh37	19	15350593	15350593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	292	679	0	ENST00000263377.2:c.3322G>C	p.Val1108Leu	p.V1108L	ENST00000263377	NM_058243.2	1108	Gtg/Ctg																																																																														
GSK3B	0	MSKCC	GRCh37	3	119595341	119595342	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0030029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	86	211	0	ENST00000316626.5:c.827dup	p.Thr277AsnfsTer16	p.T277Nfs*16	ENST00000316626		276	cca/ccCa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717699	89717699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0030032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	374	319	0	ENST00000371953.3:c.724G>T	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	242	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0030032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	383	425	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
SETD2	0	MSKCC	GRCh37	3	47103660	47103660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	157	257	0	ENST00000409792.3:c.6286G>A	p.Asp2096Asn	p.D2096N	ENST00000409792	NM_014159.6	2096	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	211	592	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	55	607	2	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																																																														
FUBP1	0	MSKCC	GRCh37	1	78429810	78429836	+	inframe_deletion	In_Frame_Del	DEL	TGTTATTTGTGCTATCCTTTCGGGTGT	TGTTATTTGTGCTATCCTTTCGGGTGT	-			P-0030033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	88	333	0	ENST00000370768.2:c.952_978del	p.Thr318_Thr326del	p.T318_T326del	ENST00000370768	NM_003902.3	318	ACACCCGAAAGGATAGCACAAATAACA/-																																																																														
ARID2	0	MSKCC	GRCh37	12	46244730	46244730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	71	531	0	ENST00000334344.6:c.2824G>T	p.Ala942Ser	p.A942S	ENST00000334344	NM_152641.2	942	Gcc/Tcc																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987109	36987109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	58	548	0	ENST00000354822.5:c.580C>T	p.Arg194Cys	p.R194C	ENST00000354822	NM_001079668.2	194	Cgc/Tgc																																																																														
RAD51B	0	MSKCC	GRCh37	14	68331795	68331795	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	64	447	0	ENST00000487270.1:c.391A>T	p.Met131Leu	p.M131L	ENST00000487270	NM_133509.3	131	Atg/Ttg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32182030	32182030	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0030033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	77	645	0	ENST00000375023.3:c.2024C>T	p.Ser675Phe	p.S675F	ENST00000375023	NM_004557.3	675	tCc/tTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412714	139412714	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	25	652	0	ENST00000277541.6:c.1130T>A	p.Ile377Asn	p.I377N	ENST00000277541	NM_017617.3	377	aTc/aAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0030049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	557	544	0	ENST00000269305.4:c.737T>C	p.Met246Thr	p.M246T	ENST00000269305	NM_001126112.2	246	aTg/aCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	41	313	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1220579	1220579	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	184	616	3	ENST00000326873.7:c.598-1G>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																															
KMT2A	0	MSKCC	GRCh37	11	118344369	118344369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	26	217	0	ENST00000534358.1:c.2495C>G	p.Pro832Arg	p.P832R	ENST00000534358	NM_005933.3	832	cCt/cGt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63531780	63531780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	100	553	2	ENST00000307078.5:c.2201C>T	p.Ala734Val	p.A734V	ENST00000307078	NM_004655.3	734	gCc/gTc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729699	41729699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	82	482	0	ENST00000242208.4:c.830G>T	p.Gly277Val	p.G277V	ENST00000242208	NM_002192.2	277	gGt/gTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151851432	151851432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	71	491	0	ENST00000262189.6:c.12059A>G	p.Asp4020Gly	p.D4020G	ENST00000262189	NM_170606.2	4020	gAt/gGt																																																																														
ARAF	0	MSKCC	GRCh37	X	47426509	47426509	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	97	314	0	ENST00000377045.4:c.852G>T	p.Leu284Phe	p.L284F	ENST00000377045	NM_001654.4	284	ttG/ttT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0030052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	229	569	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32915083	32915084	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0030052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	108	471	0	ENST00000380152.3:c.6591_6592delTG	p.Glu2198AsnfsTer4	p.E2198Nfs*4	ENST00000380152		2197	acTGaa/acaa																																																																														
KDM5A	0	MSKCC	GRCh37	12	402120	402120	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0030052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	172	472	0	ENST00000399788.2:c.4671del	p.Glu1558LysfsTer19	p.E1558Kfs*19	ENST00000399788	NM_001042603.1	1557	aaA/aa																																																																														
TSHR	0	MSKCC	GRCh37	14	81610587	81610587	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	127	396	0	ENST00000298171.2:c.2185A>T	p.Arg729Trp	p.R729W	ENST00000298171	NM_000369.2	729	Agg/Tgg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523636	176523636	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0030052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	180	742	1	ENST00000292408.4:c.2047T>C	p.Phe683Leu	p.F683L	ENST00000292408	NM_213647.1	683	Ttc/Ctc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523638	176523638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	186	740	2	ENST00000292408.4:c.2049C>A	p.Phe683Leu	p.F683L	ENST00000292408	NM_213647.1	683	ttC/ttA																																																																														
ROS1	0	MSKCC	GRCh37	6	117662654	117662654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	22	417	0	ENST00000368508.3:c.4811C>A	p.Pro1604His	p.P1604H	ENST00000368508	NM_002944.2	1604	cCt/cAt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523634	176523638	+	missense_variant	Missense_Mutation	ONP	TCTTC	TCTTC	CCCTA			P-0030052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	192	725	0	ENST00000292408.4:c.2045_2049delinsCCCTA	p.Ile682_Phe683delinsThrLeu	p.I682_F683delinsTL	ENST00000292408	NM_213647.1	682	aTCTTC/aCCCTA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	77	428	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857679	9857679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	68	332	0	ENST00000330684.3:c.3722G>A	p.Arg1241Gln	p.R1241Q	ENST00000330684	NM_001134407.1	1241	cGg/cAg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600429	10600429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	139	616	0	ENST00000171111.5:c.1426G>A	p.Gly476Arg	p.G476R	ENST00000171111	NM_203500.1	476	Ggg/Agg																																																																														
STK11	0	MSKCC	GRCh37	19	1207065	1207074	+	protein_altering_variant	In_Frame_Del	DEL	GGGGGACCTG	GGGGGACCTG	CCCC			P-0030111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	104	617	3	ENST00000326873.7:c.153_162delinsCCCC	p.Met51_Leu54delinsIlePro	p.M51_L54delinsIP	ENST00000326873	NM_000455.4	51	atGGGGGACCTG/atCCCC																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123623	11123623	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0030111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	83	419	0	ENST00000344626.4:c.2275-2A>T		p.X759_splice	ENST00000344626	NM_003072.3	759																																																																															
HIST1H3B	0	MSKCC	GRCh37	6	26031951	26031955	+	stop_gained	Nonsense_Mutation	INS	ATGGC	ATGGC	TTTGTGTCCTCAAAGAGCCTTAGCAAAGGTTTGTGTCCTTA			P-0030111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	24	345	0	ENST00000244661.2:c.334_338delinsTAAGGACACAAACCTTTGCTAAGGCTCTTTGAGGACACAAA	p.Ala112_Ile113delinsTer	p.A112_I113delins*	ENST00000244661	NM_003537.3	112	GCCATc/TAAGGACACAAACCTTTGCTAAGGCTCTTTGAGGACACAAAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720805	89720808	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0000131-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	129	288	0	ENST00000371953.3:c.956_959delCTTT	p.Thr319LysfsTer24	p.T319Kfs*24	ENST00000371953	NM_000314.4	319	aCTTTa/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000131-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	504	636	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000847-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			699	192	484	0	ENST00000250448.2:c.781C>T	p.Arg261Cys	p.R261C	ENST00000250448	NM_004496.3	261	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578505	7578506	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0000847-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			590	251	751	0	ENST00000269305.4:c.424_425del	p.Pro142CysfsTer6	p.P142Cfs*6	ENST00000269305	NM_001126112.2	142	CCt/t																																																																														
SHOC2	0	MSKCC	GRCh37	10	112767348	112767348	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002612-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			864	132	356	0	ENST00000369452.4:c.1221G>C	p.Leu407Phe	p.L407F	ENST00000369452	NM_007373.3	407	ttG/ttC																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627559	14627563	+	frameshift_variant	Frame_Shift_Del	DEL	AGACT	AGACT	-			P-0002612-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			568	232	392	0	ENST00000254322.2:c.507_511del	p.Val170ProfsTer2	p.V170Pfs*2	ENST00000254322	NM_006145.1	169	cgAGTCTcc/cgcc																																																																														
TOP1	0	MSKCC	GRCh37	20	39690101	39690101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002612-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			457	241	250	0	ENST00000361337.2:c.126G>T	p.Lys42Asn	p.K42N	ENST00000361337	NM_003286.2	42	aaG/aaT																																																																														
MSH3	0	MSKCC	GRCh37	5	79950580	79950580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002612-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			450	108	282	0	ENST00000265081.6:c.34G>A	p.Ala12Thr	p.A12T	ENST00000265081	NM_002439.4	12	Gct/Act																																																																														
TP53	0	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	69	159	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																														
CASP8	0	MSKCC	GRCh37	2	202131505	202131505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	77	147	0	ENST00000358485.4:c.473C>T	p.Ser158Phe	p.S158F	ENST00000358485	NM_001080125.1	158	tCt/tTt																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439886	51439886	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	55	99	0	ENST00000262662.1:c.451G>C	p.Glu151Gln	p.E151Q	ENST00000262662		151	Gag/Cag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178097986	178097986	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	143	212	0	ENST00000397062.3:c.394G>C	p.Asp132His	p.D132H	ENST00000397062	NM_006164.4	132	Gac/Cac																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	173	305	0	ENST00000397062.3:c.229G>C	p.Asp77His	p.D77H	ENST00000397062	NM_006164.4	77	Gat/Cat																																																																														
CASP8	0	MSKCC	GRCh37	2	202151270	202151270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	193	291	0	ENST00000358485.4:c.1570C>T	p.Gln524Ter	p.Q524*	ENST00000358485	NM_001080125.1	524	Cag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47098545	47098545	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	137	216	0	ENST00000409792.3:c.6729G>C	p.Gln2243His	p.Q2243H	ENST00000409792	NM_014159.6	2243	caG/caC																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186506999	186506999	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	187	306	0	ENST00000323963.5:c.1165G>C	p.Glu389Gln	p.E389Q	ENST00000323963		389	Gag/Cag																																																																														
PLK2	0	MSKCC	GRCh37	5	57754898	57754898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	121	210	0	ENST00000274289.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000274289	NM_006622.3	98	Gag/Aag																																																																														
HIST1H3A	0	MSKCC	GRCh37	6	26021093	26021093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	173	348	0	ENST00000357647.3:c.376C>G	p.Gln126Glu	p.Q126E	ENST00000357647	NM_003529.2	126	Cag/Gag																																																																														
EZH2	0	MSKCC	GRCh37	7	148507491	148507491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	138	242	0	ENST00000320356.2:c.1963G>C	p.Glu655Gln	p.E655Q	ENST00000320356	NM_004456.4	655	Gaa/Caa																																																																														
MYC	0	MSKCC	GRCh37	8	128750684	128750684	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	128	253	0	ENST00000377970.2:c.221C>G	p.Pro74Arg	p.P74R	ENST00000377970	NM_002467.4	74	cCg/cGg																																																																														
ETV6	0	MSKCC	GRCh37	12	12037473	12037473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	162	183	0	ENST00000396373.4:c.1104C>A	p.Phe368Leu	p.F368L	ENST00000396373	NM_001987.4	368	ttC/ttA																																																																														
ETV6	0	MSKCC	GRCh37	12	12038958	12038958	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	143	182	0	ENST00000396373.4:c.1251C>A	p.Phe417Leu	p.F417L	ENST00000396373	NM_001987.4	417	ttC/ttA																																																																														
MGA	0	MSKCC	GRCh37	15	41988358	41988358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	187	429	0	ENST00000219905.7:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000219905	NM_001164273.1	384	Gaa/Aaa																																																																														
MGA	0	MSKCC	GRCh37	15	41988433	41988433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	188	361	0	ENST00000219905.7:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000219905	NM_001164273.1	409	Gaa/Aaa																																																																														
MGA	0	MSKCC	GRCh37	15	41988442	41988442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	208	359	0	ENST00000219905.7:c.1234G>T	p.Asp412Tyr	p.D412Y	ENST00000219905	NM_001164273.1	412	Gat/Tat																																																																														
MGA	0	MSKCC	GRCh37	15	41988745	41988745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	232	410	2	ENST00000219905.7:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000219905	NM_001164273.1	513	Gaa/Aaa																																																																														
MGA	0	MSKCC	GRCh37	15	41989055	41989055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	250	424	0	ENST00000219905.7:c.1847G>A	p.Arg616Lys	p.R616K	ENST00000219905	NM_001164273.1	616	aGg/aAg																																																																														
MGA	0	MSKCC	GRCh37	15	41989061	41989061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	254	417	1	ENST00000219905.7:c.1853G>A	p.Arg618Gln	p.R618Q	ENST00000219905	NM_001164273.1	618	cGa/cAa																																																																														
MGA	0	MSKCC	GRCh37	15	41989147	41989147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	190	362	0	ENST00000219905.7:c.1939G>A	p.Gly647Arg	p.G647R	ENST00000219905	NM_001164273.1	647	Ggg/Agg																																																																														
MGA	0	MSKCC	GRCh37	15	41989174	41989174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	189	356	0	ENST00000219905.7:c.1966G>C	p.Asp656His	p.D656H	ENST00000219905	NM_001164273.1	656	Gat/Cat																																																																														
MGA	0	MSKCC	GRCh37	15	41991303	41991303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	264	331	0	ENST00000219905.7:c.2134G>A	p.Glu712Lys	p.E712K	ENST00000219905	NM_001164273.1	712	Gaa/Aaa																																																																														
MGA	0	MSKCC	GRCh37	15	42035074	42035074	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	272	377	0	ENST00000219905.7:c.4916A>T	p.Glu1639Val	p.E1639V	ENST00000219905	NM_001164273.1	1639	gAg/gTg																																																																														
BLM	0	MSKCC	GRCh37	15	91354521	91354521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	140	214	0	ENST00000355112.3:c.3961G>C	p.Val1321Leu	p.V1321L	ENST00000355112	NM_000057.2	1321	Gta/Cta																																																																														
PLCG2	0	MSKCC	GRCh37	16	81972490	81972490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	230	361	0	ENST00000359376.3:c.3283G>A	p.Asp1095Asn	p.D1095N	ENST00000359376	NM_002661.3	1095	Gac/Aac																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732535	74732535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	88	183	0	ENST00000359995.5:c.374G>A	p.Arg125His	p.R125H	ENST00000359995	NM_001195427.1	125	cGt/cAt																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4099375	4099375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	105	258	1	ENST00000262948.5:c.743C>T	p.Ser248Leu	p.S248L	ENST00000262948	NM_030662.3	248	tCg/tTg																																																																														
CALR	0	MSKCC	GRCh37	19	13051236	13051236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	176	338	0	ENST00000316448.5:c.672G>C	p.Lys224Asn	p.K224N	ENST00000316448	NM_004343.3	224	aaG/aaC																																																																														
SETD2	0	MSKCC	GRCh37	3	47098623	47098871	+	inframe_deletion	In_Frame_Del	DEL	AAGGGGTTCTGTAGAATGTCCCACCAAGGGCTGAGCATGATCATAAGGAGCAGGAGAACACACTGGGTCCATGCTGGGTGTGGGCAGGAGCACCTTTCCAGCATTAGGGTTGCTGGGATCCACATAGGCCTGCATGGGATAACCTGGTGGGTAACCAGCAAAGGGATGATGCGGGGCATTATAACCAAGAGAGTCATAGGGCAGTGGTGATGTCATTCCCAGGTTCTGCATCTGTTGCTGTTGTTTCTG	AAGGGGTTCTGTAGAATGTCCCACCAAGGGCTGAGCATGATCATAAGGAGCAGGAGAACACACTGGGTCCATGCTGGGTGTGGGCAGGAGCACCTTTCCAGCATTAGGGTTGCTGGGATCCACATAGGCCTGCATGGGATAACCTGGTGGGTAACCAGCAAAGGGATGATGCGGGGCATTATAACCAAGAGAGTCATAGGGCAGTGGTGATGTCATTCCCAGGTTCTGCATCTGTTGCTGTTGTTTCTG	-			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	66	210	0	ENST00000409792.3:c.6403_6651del	p.Gln2135_Leu2217del	p.Q2135_L2217del	ENST00000409792	NM_014159.6	2135	CAGAAACAACAGCAACAGATGCAGAACCTGGGAATGACATCACCACTGCCCTATGACTCTCTTGGTTATAATGCCCCGCATCATCCCTTTGCTGGTTACCCACCAGGTTATCCCATGCAGGCCTATGTGGATCCCAGCAACCCTAATGCTGGAAAGGTGCTCCTGCCCACACCCAGCATGGACCCAGTGTGTTCTCCTGCTCCTTATGATCATGCTCAGCCCTTGGTGGGACATTCTACAGAACCCCTT/-																																																																														
MGA	0	MSKCC	GRCh37	15	41989042	41989042	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	255	429	0	ENST00000219905.7:c.1835del	p.Gly612GlufsTer9	p.G612Efs*9	ENST00000219905	NM_001164273.1	612	Gga/ga																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026961	71026984	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAGGTGGAGTATCTACCTGACG	AAAAGGTGGAGTATCTACCTGACG	-			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	79	111	0	ENST00000318789.4:c.1343_1348+18del		p.X448_splice	ENST00000318789	NM_032682.5	448																																																																															
PMAIP1	0	MSKCC	GRCh37	18	57569947	57569947	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	245	201	0	ENST00000316660.6:c.127del	p.Leu43Ter	p.L43*	ENST00000316660	NM_021127.2	43	Ctg/tg																																																																														
MGA	0	MSKCC	GRCh37	15	41988895	41988899	+	missense_variant	Missense_Mutation	ONP	GAAAG	GAAAG	AAAAA			P-0003132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	245	366	0	ENST00000219905.7:c.1687_1691delinsAAAAA	p.Glu563_Arg564delinsLysLys	p.E563_R564delinsKK	ENST00000219905	NM_001164273.1	563	GAAAGa/AAAAAa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458525	120458525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			780	107	515	0	ENST00000256646.2:c.6820C>T	p.Pro2274Ser	p.P2274S	ENST00000256646	NM_024408.3	2274	Cca/Tca																																																																														
INPPL1	0	MSKCC	GRCh37	11	71940138	71940138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			714	118	588	0	ENST00000298229.2:c.523C>T	p.Pro175Ser	p.P175S	ENST00000298229	NM_001567.3	175	Ccc/Tcc																																																																														
ETV6	0	MSKCC	GRCh37	12	12043924	12043924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			709	56	441	0	ENST00000396373.4:c.1303G>C	p.Glu435Gln	p.E435Q	ENST00000396373	NM_001987.4	435	Gag/Cag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43700158	43700158	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			429	33	381	1	ENST00000382044.4:c.5729C>A	p.Ser1910Ter	p.S1910*	ENST00000382044	NM_001141980.1	1910	tCa/tAa																																																																														
CDH1	0	MSKCC	GRCh37	16	68867343	68867343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142927667		P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			382	121	508	0	ENST00000261769.5:c.2590G>A	p.Glu864Lys	p.E864K	ENST00000261769	NM_004360.3	864	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			457	169	677	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																														
DOT1L	0	MSKCC	GRCh37	19	2207627	2207627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			585	165	671	0	ENST00000398665.3:c.911C>T	p.Ser304Leu	p.S304L	ENST00000398665	NM_032482.2	304	tCg/tTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10267166	10267166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			649	50	468	0	ENST00000340748.4:c.1252C>A	p.His418Asn	p.H418N	ENST00000340748		418	Cac/Aac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170513	11170513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			595	170	669	0	ENST00000344626.4:c.4720G>T	p.Glu1574Ter	p.E1574*	ENST00000344626	NM_003072.3	1574	Gag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170519	11170519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			588	169	649	0	ENST00000344626.4:c.4726G>A	p.Glu1576Lys	p.E1576K	ENST00000344626	NM_003072.3	1576	Gag/Aag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170531	11170531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			559	161	644	0	ENST00000344626.4:c.4738G>A	p.Glu1580Lys	p.E1580K	ENST00000344626	NM_003072.3	1580	Gag/Aag																																																																														
MYCN	0	MSKCC	GRCh37	2	16082580	16082580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			233	55	292	1	ENST00000281043.3:c.394G>A	p.Glu132Lys	p.E132K	ENST00000281043	NM_005378.4	132	Gag/Aag																																																																														
ERCC3	0	MSKCC	GRCh37	2	128047037	128047037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			492	113	491	0	ENST00000285398.2:c.698C>A	p.Ser233Tyr	p.S233Y	ENST00000285398	NM_000122.1	233	tCc/tAc																																																																														
EP300	0	MSKCC	GRCh37	22	41489079	41489079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			522	117	366	0	ENST00000263253.7:c.71C>T	p.Ser24Leu	p.S24L	ENST00000263253	NM_001429.3	24	tCg/tTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			469	106	456	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271460	26271460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			713	122	453	0	ENST00000305910.3:c.153G>C	p.Glu51Asp	p.E51D	ENST00000305910	NM_003534.2	51	gaG/gaC																																																																														
MDC1	0	MSKCC	GRCh37	6	30673794	30673794	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			754	52	449	0	ENST00000376406.3:c.3166C>G	p.Gln1056Glu	p.Q1056E	ENST00000376406	NM_014641.2	1056	Cag/Gag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874425	151874425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			306	82	396	0	ENST00000262189.6:c.8113G>C	p.Glu2705Gln	p.E2705Q	ENST00000262189	NM_170606.2	2705	Gag/Cag																																																																														
ATRX	0	MSKCC	GRCh37	X	76849304	76849304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003233-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			361	96	457	0	ENST00000373344.5:c.5972C>T	p.Ser1991Phe	p.S1991F	ENST00000373344	NM_000489.3	1991	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	114	472	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	61	358	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	109	358	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	36	320	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	39	255	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	94	324	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ALK	0	MSKCC	GRCh37	2	29754890	29754890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	26	317	0	ENST00000389048.3:c.1045G>A	p.Val349Ile	p.V349I	ENST00000389048	NM_004304.4	349	Gtc/Atc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41275099	41275099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	42	391	0	ENST00000349496.5:c.1265G>T	p.Gly422Val	p.G422V	ENST00000349496	NM_001904.3	422	gGa/gTa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71037144	71037144	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	59	260	0	ENST00000318789.4:c.1146+1G>A		p.X382_splice	ENST00000318789	NM_032682.5	382																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178952086	178952086	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	51	317	0	ENST00000263967.3:c.3141T>G	p.His1047Gln	p.H1047Q	ENST00000263967	NM_006218.2	1047	caT/caG																																																																														
DIS3	0	MSKCC	GRCh37	13	73355010	73355010	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	91	258	0	ENST00000377767.4:c.360C>G	p.Phe120Leu	p.F120L	ENST00000377767	NM_014953.3	120	ttC/ttG																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52725412	52725412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770194852		P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	31	390	0	ENST00000322088.6:c.1579C>T	p.Arg527Cys	p.R527C	ENST00000322088	NM_014225.5	527	Cgc/Tgc																																																																														
SOX9	0	MSKCC	GRCh37	17	70119829	70119832	+	frameshift_variant	Frame_Shift_Del	DEL	GCTG	GCTG	CCT			P-0003513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	180	424	0	ENST00000245479.2:c.831_834delinsCCT	p.Glu277AspfsTer106	p.E277Dfs*106	ENST00000245479	NM_000346.3	277	gaGCTG/gaCCT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003866-T06-IM6									Unknown	SOMATIC				MSK-IMPACT			558	207	601	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351374	89351374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003866-T06-IM6									Unknown	SOMATIC				MSK-IMPACT			716	52	756	0	ENST00000301030.4:c.1576C>T	p.His526Tyr	p.H526Y	ENST00000301030	NM_001256183.1	526	Cac/Tac																																																																														
PMS1	0	MSKCC	GRCh37	2	190708802	190708802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003866-T06-IM6									Unknown	SOMATIC				MSK-IMPACT			621	136	527	0	ENST00000441310.2:c.695C>G	p.Ser232Cys	p.S232C	ENST00000441310	NM_000534.4	232	tCt/tGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057727	27057727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			679	173	854	0	ENST00000324856.7:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000324856	NM_006015.4	479	Cag/Tag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779766	3779766	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0004094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	138	602	0	ENST00000262367.5:c.5282C>G	p.Ser1761Ter	p.S1761*	ENST00000262367	NM_004380.2	1761	tCa/tGa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243494	41243494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	166	653	0	ENST00000357654.3:c.4054G>A	p.Glu1352Lys	p.E1352K	ENST00000357654	NM_007294.3	1352	Gaa/Aaa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245110	41245110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			674	184	794	0	ENST00000357654.3:c.2438G>A	p.Gly813Glu	p.G813E	ENST00000357654	NM_007294.3	813	gGa/gAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47058739	47058741	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0004094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			301	195	378	0	ENST00000409792.3:c.7537_7539del	p.Thr2513del	p.T2513del	ENST00000409792	NM_014159.6	2513	ACT/-																																																																														
MSH3	0	MSKCC	GRCh37	5	79974807	79974807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			672	137	605	0	ENST00000265081.6:c.1235C>T	p.Ser412Leu	p.S412L	ENST00000265081	NM_002439.4	412	tCa/tTa																																																																														
BRAF	0	MSKCC	GRCh37	7	140487374	140487374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			902	188	651	0	ENST00000288602.6:c.1151G>C	p.Arg384Thr	p.R384T	ENST00000288602	NM_004333.4	384	aGa/aCa																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	173	475	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																														
GLI1	0	MSKCC	GRCh37	12	57857794	57857794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	440	557	1	ENST00000228682.2:c.113C>T	p.Pro38Leu	p.P38L	ENST00000228682	NM_005269.2	38	cCg/cTg																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627524	14627531	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCTTGG	CTTCTTGG	-			P-0004756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	150	414	0	ENST00000254322.2:c.539_546del	p.Thr180AsnfsTer52	p.T180Nfs*52	ENST00000254322	NM_006145.1	180	aCCAAGAAG/a																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67569224	67569224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	135	389	0	ENST00000274335.5:c.341C>T	p.Thr114Ile	p.T114I	ENST00000274335		114	aCt/aTt																																																																														
KIT	0	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004937-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			21	553	640	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153271201	153271202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004937-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			39	273	360	0	ENST00000281708.4:c.576dup	p.Tyr193IlefsTer63	p.Y193Ifs*63	ENST00000281708	NM_033632.3	192	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005502-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			85	872	857	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CSF3R	0	MSKCC	GRCh37	1	36939103	36939103	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005502-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			604	393	843	3	ENST00000361632.4:c.606G>A	p.Trp202Ter	p.W202*	ENST00000361632		202	tgG/tgA																																																																														
ROS1	0	MSKCC	GRCh37	6	117718114	117718114	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005502-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			576	436	643	1	ENST00000368508.3:c.743T>A	p.Phe248Tyr	p.F248Y	ENST00000368508	NM_002944.2	248	tTc/tAc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14024570	14024570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005502-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			34	257	359	0	ENST00000311895.7:c.796A>G	p.Ile266Val	p.I266V	ENST00000311895	NM_005236.2	266	Atc/Gtc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12044474	12044474	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005502-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			40	453	349	0	ENST00000353533.5:c.1097T>C	p.Phe366Ser	p.F366S	ENST00000353533	NM_003010.3	366	tTt/tCt																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324219	31324463	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGGCCCCGGCCCCGCGGTCAGCCCAGTCCCCCGAGCCCCGCCCCGCCCCGACCAACCCGCGGGGATTTTGGCCTCAACTGAAAATGAAACCGGGTAAACGCGCCTGGGGCTCTCGCCGGTCGAGGGTCTGGGCGGGTCCCGCGGCCTCAGGGAGGCGGATCTCGGACCCGGAGACTCGGGGCGACCCGGGCCGTACGTGGGGGATGGGGAGTCGTGACCTGCGCCCCGGGCCGGGGTCACTCA	CCTGGCCCCGGCCCCGCGGTCAGCCCAGTCCCCCGAGCCCCGCCCCGCCCCGACCAACCCGCGGGGATTTTGGCCTCAACTGAAAATGAAACCGGGTAAACGCGCCTGGGGCTCTCGCCGGTCGAGGGTCTGGGCGGGTCCCGCGGCCTCAGGGAGGCGGATCTCGGACCCGGAGACTCGGGGCGACCCGGGCCGTACGTGGGGGATGGGGAGTCGTGACCTGCGCCCCGGGCCGGGGTCACTCA	-			P-0005502-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	125	492	0	ENST00000412585.2:c.343+2_344del		p.X115_splice	ENST00000412585	NM_005514.6	115																																																																															
HLA-B	0	MSKCC	GRCh37	6	31323001	31323093	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	CTGGGAAAGGAGGGGAAGATGAGGGGCCCTGACCCTGCTGAAGGGCTCCTGCTTTCCCTGAGAAGAGATATGACCCCTCATCCCCCTCCTTAC	CTGGGAAAGGAGGGGAAGATGAGGGGCCCTGACCCTGCTGAAGGGCTCCTGCTTTCCCTGAGAAGAGATATGACCCCTCATCCCCCTCCTTAC	-			P-0005502-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1673	352	887	0	ENST00000412585.2:c.895+1_896-1del		p.X299_splice	ENST00000412585	NM_005514.6	299																																																																															
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	232	737	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
RB1	0	MSKCC	GRCh37	13	48947564	48947567	+	frameshift_variant	Frame_Shift_Del	DEL	AATT	AATT	-			P-0005763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	121	591	0	ENST00000267163.4:c.1154_1157del	p.Leu385Ter	p.L385*	ENST00000267163	NM_000321.2	384	cAATTa/ca																																																																														
MED12	0	MSKCC	GRCh37	X	70357724	70357727	+	frameshift_variant	Frame_Shift_Del	DEL	AACA	AACA	-			P-0005763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	299	558	0	ENST00000374080.3:c.5975_5978del	p.Gln1992ArgfsTer18	p.Q1992Rfs*18	ENST00000374080		1992	cAACAg/cg																																																																														
EGFR	0	MSKCC	GRCh37	7	55242478	55242507	+	protein_altering_variant	In_Frame_Del	DEL	GCAACATCTCCGAAAGCCAACAAGGAAATC	GCAACATCTCCGAAAGCCAACAAGGAAATC	CCAACA			P-0005763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	321	674	0	ENST00000275493.2:c.2248_2277delinsCCAACA	p.Ala750_Ile759delinsProThr	p.A750_I759delinsPT	ENST00000275493	NM_005228.3	750	GCAACATCTCCGAAAGCCAACAAGGAAATC/CCAACA																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0006418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	290	662	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	128	490	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692793	89692793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	60	217	0	ENST00000371953.3:c.277C>T	p.His93Tyr	p.H93Y	ENST00000371953	NM_000314.4	93	Cat/Tat																																																																														
DDR2	0	MSKCC	GRCh37	1	162745587	162745587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	138	450	1	ENST00000367921.3:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000367921	NM_006182.2	668	Cgc/Tgc																																																																														
TERT	0	MSKCC	GRCh37	5	1268664	1268664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	256	684	0	ENST00000310581.5:c.2553C>A	p.Asn851Lys	p.N851K	ENST00000310581	NM_198253.2	851	aaC/aaA																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591116	67591116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	149	362	1	ENST00000274335.5:c.1709T>C	p.Leu570Pro	p.L570P	ENST00000274335		570	cTt/cCt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023360	27023361	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	350	268	1	ENST00000324856.7:c.466_467insA	p.Arg156GlnfsTer244	p.R156Qfs*244	ENST00000324856	NM_006015.4	156	cgg/cAgg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692988	89693009	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GTAAGGACCAGAGACAAAAAGG	GTAAGGACCAGAGACAAAAAGG	AGT			P-0006418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	46	288	0	ENST00000371953.3:c.472_492+1delinsAGT		p.X158_splice	ENST00000371953	NM_000314.4	158																																																																															
KIT	0	MSKCC	GRCh37	4	55593653	55593654	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACACAACTTCCTTATGATCAT			P-0006664-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			801	204	506	0	ENST00000288135.5:c.1739_1740insTACACAACTTCCTTATGATCA	p.Thr574_His580dup	p.T574_H580dup	ENST00000288135	NM_000222.2	574	-/ACACAACTTCCTTATGATCAT																																																																														
FLT3	0	MSKCC	GRCh37	13	28622565	28622565	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006664-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	240	315	0	ENST00000241453.7:c.1052del	p.Asn351MetfsTer83	p.N351Mfs*83	ENST00000241453	NM_004119.2	351	aAt/at																																																																														
KIT	0	MSKCC	GRCh37	4	55599334	55599334	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006664-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			540	336	484	1	ENST00000288135.5:c.2460T>A	p.Asp820Glu	p.D820E	ENST00000288135	NM_000222.2	820	gaT/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	153	342	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
AKT3	0	MSKCC	GRCh37	1	243828161	243828161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	43	372	0	ENST00000263826.5:c.197G>C	p.Arg66Pro	p.R66P	ENST00000263826	NM_005465.4	66	cGa/cCa																																																																														
SETD2	0	MSKCC	GRCh37	3	47098416	47098416	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	127	451	1	ENST00000409792.3:c.6858C>G	p.Tyr2286Ter	p.Y2286*	ENST00000409792	NM_014159.6	2286	taC/taG																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467484	66467484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	79	427	0	ENST00000273854.3:c.785G>C	p.Cys262Ser	p.C262S	ENST00000273854	NM_004439.5	262	tGt/tCt																																																																														
FLT4	0	MSKCC	GRCh37	5	180057584	180057584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	351	541	1	ENST00000261937.6:c.371C>T	p.Thr124Met	p.T124M	ENST00000261937	NM_182925.4	124	aCg/aTg																																																																														
FANCA	0	MSKCC	GRCh37	16	89806486	89806486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	190	465	1	ENST00000389301.3:c.3850G>T	p.Ala1284Ser	p.A1284S	ENST00000389301	NM_000135.2	1284	Gct/Tct																																																																														
TP53	0	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	235	551	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575213	48575241	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGTATCACCTGGAATTGGTAAGTAGACT	TTGTATCACCTGGAATTGGTAAGTAGACT	-			P-0007113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	52	339	0	ENST00000342988.3:c.410_424+14del		p.X137_splice	ENST00000342988	NM_005359.5	137																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	189	388	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508064	106508064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	23	186	0	ENST00000359195.3:c.58C>T	p.Arg20Cys	p.R20C	ENST00000359195	NM_002649.2	20	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	168	689	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																														
ACVR1	0	MSKCC	GRCh37	2	158594123	158594123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	22	346	0	ENST00000263640.3:c.1450G>T	p.Ala484Ser	p.A484S	ENST00000263640	NM_001105.4	484	Gca/Tca																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522532	157522532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	159	720	0	ENST00000346085.5:c.4804A>G	p.Ile1602Val	p.I1602V	ENST00000346085	NM_020732.3	1602	Atc/Gtc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467821	50467821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	155	399	1	ENST00000331340.3:c.1056G>T	p.Lys352Asn	p.K352N	ENST00000331340	NM_006060.4	352	aaG/aaT																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106526687	106526687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	36	448	0	ENST00000359195.3:c.2980G>T	p.Val994Leu	p.V994L	ENST00000359195	NM_002649.2	994	Gtg/Ttg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602715	10602715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	288	764	3	ENST00000171111.5:c.863G>T	p.Cys288Phe	p.C288F	ENST00000171111	NM_203500.1	288	tGc/tTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152006	11152018	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGATCGAAGAG	GGAGATCGAAGAG	-			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	150	476	0	ENST00000344626.4:c.4195_4207del	p.Glu1399ArgfsTer60	p.E1399Rfs*60	ENST00000344626	NM_003072.3	1398	gaGGAGATCGAAGAG/ga																																																																														
STK11	0	MSKCC	GRCh37	19	1218475	1218497	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TATACAACGAAGAGAAGCAGAAA	TATACAACGAAGAGAAGCAGAAA	-			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	170	553	0	ENST00000326873.7:c.350_372del	p.Leu117TyrfsTer38	p.L117Yfs*38	ENST00000326873	NM_000455.4	117	tTATACAACGAAGAGAAGCAGAAA/t																																																																														
CCNE1	0	MSKCC	GRCh37	19	30312724	30312724	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	123	429	0	ENST00000262643.3:c.705G>T	p.Lys235Asn	p.K235N	ENST00000262643	NM_001238.2	235	aaG/aaT																																																																														
ASXL2	0	MSKCC	GRCh37	2	26022367	26022367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	36	449	0	ENST00000435504.4:c.290G>T	p.Gly97Val	p.G97V	ENST00000435504		97	gGt/gTt																																																																														
NTRK2	0	MSKCC	GRCh37	9	87359888	87359888	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	78	327	0	ENST00000277120.3:c.1196A>G	p.Asp399Gly	p.D399G	ENST00000277120		399	gAt/gGt																																																																														
BCOR	0	MSKCC	GRCh37	X	39932811	39932811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	78	702	0	ENST00000378444.4:c.1788G>T	p.Gln596His	p.Q596H	ENST00000378444	NM_001123385.1	596	caG/caT																																																																														
BCOR	0	MSKCC	GRCh37	X	39933730	39933730	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	69	534	0	ENST00000378444.4:c.869A>T	p.Lys290Met	p.K290M	ENST00000378444	NM_001123385.1	290	aAg/aTg																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	83	251	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434070	121434070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	39	373	5	ENST00000257555.6:c.961C>T	p.Arg321Cys	p.R321C	ENST00000257555		321	Cgc/Tgc																																																																														
PMS1	0	MSKCC	GRCh37	2	190660665	190660665	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	44	229	1	ENST00000441310.2:c.303T>A	p.Cys101Ter	p.C101*	ENST00000441310	NM_000534.4	101	tgT/tgA																																																																														
BARD1	0	MSKCC	GRCh37	2	215645564	215645564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	19	267	0	ENST00000260947.4:c.1034G>A	p.Gly345Glu	p.G345E	ENST00000260947	NM_000465.2	345	gGa/gAa																																																																														
ATR	0	MSKCC	GRCh37	3	142281231	142281231	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	36	295	0	ENST00000350721.4:c.1013A>C	p.Lys338Thr	p.K338T	ENST00000350721	NM_001184.3	338	aAg/aCg																																																																														
FAT1	0	MSKCC	GRCh37	4	187554900	187554900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	17	399	0	ENST00000441802.2:c.4261C>A	p.Gln1421Lys	p.Q1421K	ENST00000441802	NM_005245.3	1421	Cag/Aag																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527875	157527875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	62	295	0	ENST00000346085.5:c.5600A>G	p.Glu1867Gly	p.E1867G	ENST00000346085	NM_020732.3	1867	gAg/gGg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8501060	8501060	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	18	191	0	ENST00000356435.5:c.1823-1G>C		p.X608_splice	ENST00000356435		608																																																																															
ARID2	0	MSKCC	GRCh37	12	46245315	46245315	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	34	296	0	ENST00000334344.6:c.3409T>C	p.Ser1137Pro	p.S1137P	ENST00000334344	NM_152641.2	1137	Tca/Cca																																																																														
GLI1	0	MSKCC	GRCh37	12	57864655	57864655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	48	638	0	ENST00000228682.2:c.2132C>A	p.Thr711Asn	p.T711N	ENST00000228682	NM_005269.2	711	aCc/aAc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32954172	32954172	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	45	366	0	ENST00000380152.3:c.9146A>G	p.Tyr3049Cys	p.Y3049C	ENST00000380152		3049	tAc/tGc																																																																														
CDK12	0	MSKCC	GRCh37	17	37650795	37650795	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	54	365	0	ENST00000447079.4:c.2267A>C	p.Lys756Thr	p.K756T	ENST00000447079	NM_015083.1	756	aAg/aCg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59861688	59861688	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	41	384	0	ENST00000259008.2:c.1571A>T	p.Gln524Leu	p.Q524L	ENST00000259008	NM_032043.2	524	cAa/cTa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5240259	5240259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	34	395	0	ENST00000357368.4:c.1655G>T	p.Ser552Ile	p.S552I	ENST00000357368	NM_002850.3	552	aGt/aTt																																																																														
SPOP	0	MSKCC	GRCh37	17	47679313	47679345	+	inframe_deletion	In_Frame_Del	DEL	GGACAGGTTACTGCAGAGGGCATCCTCACACAT	GGACAGGTTACTGCAGAGGGCATCCTCACACAT	-			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	170	325	0	ENST00000347630.2:c.862_894del	p.Met288_Ser298del	p.M288_S298del	ENST00000347630	NM_001007230.1	288	ATGTGTGAGGATGCCCTCTGCAGTAACCTGTCC/-																																																																														
TSC2	0	MSKCC	GRCh37	16	2104320	2104342	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCCTCTTCTTTAAGGTCATCA	AGCCCTCTTCTTTAAGGTCATCA	-			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	53	370	1	ENST00000219476.3:c.362_384del	p.Ala121GlyfsTer34	p.A121Gfs*34	ENST00000219476	NM_000548.3	120	agAGCCCTCTTCTTTAAGGTCATCAag/agag																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158749	26158760	+	inframe_deletion	In_Frame_Del	DEL	GCCGTCACCAAG	GCCGTCACCAAG	-			P-0008082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	115	136	0	ENST00000289316.2:c.352_363del	p.Ala118_Lys121del	p.A118_K121del	ENST00000289316	NM_138720.2	118	GCCGTCACCAAG/-																																																																														
TRAF7	0	MSKCC	GRCh37	16	2226093	2226093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			816	60	663	0	ENST00000326181.6:c.1790G>T	p.Gly597Val	p.G597V	ENST00000326181	NM_032271.2	597	gGc/gTc																																																																														
TP53	0	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008525-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	232	610	0	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008712-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			809	210	525	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008712-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			876	168	479	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0008712-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	8	232	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
EZH1	0	MSKCC	GRCh37	17	40879676	40879676	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008712-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			989	192	498	0	ENST00000428826.2:c.223A>T	p.Ser75Cys	p.S75C	ENST00000428826		75	Agt/Tgt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2207627	2207627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008712-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			890	220	615	1	ENST00000398665.3:c.911C>T	p.Ser304Leu	p.S304L	ENST00000398665	NM_032482.2	304	tCg/tTg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99193510	99193510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008712-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			987	194	577	0	ENST00000074304.5:c.2705C>T	p.Thr902Ile	p.T902I	ENST00000074304	NM_001134224.1	902	aCa/aTa																																																																														
FAT1	0	MSKCC	GRCh37	4	187510349	187510349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008712-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	68	239	0	ENST00000441802.2:c.13164G>T	p.Trp4388Cys	p.W4388C	ENST00000441802	NM_005245.3	4388	tgG/tgT																																																																														
WT1	0	MSKCC	GRCh37	11	32438072	32438072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	196	557	0	ENST00000332351.3:c.965G>T	p.Ser322Ile	p.S322I	ENST00000332351	NM_024426.4	322	aGc/aTc																																																																														
TBX3	0	MSKCC	GRCh37	12	115114135	115114135	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	117	611	0	ENST00000257566.3:c.1082G>C	p.Gly361Ala	p.G361A	ENST00000257566	NM_016569.3	361	gGg/gCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	175	690	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867301	45867301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	55	592	1	ENST00000391945.4:c.892G>A	p.Ala298Thr	p.A298T	ENST00000391945	NM_000400.3	298	Gcc/Acc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0008925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	966	607	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
BCOR	0	MSKCC	GRCh37	X	39933871	39933871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	222	697	0	ENST00000378444.4:c.728G>T	p.Arg243Leu	p.R243L	ENST00000378444	NM_001123385.1	243	cGc/cTc																																																																														
AR	367	MSKCC	GRCh37	X	66766357	66766374	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGC	-	rs780052930		P-0009014-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			75	7	77	0	ENST00000374690.3:c.1403_1420del	p.Gly468_Gly473del	p.G468_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGC/-																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509060	106509060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009014-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			327	98	375	0	ENST00000359195.3:c.1054G>A	p.Val352Met	p.V352M	ENST00000359195	NM_002649.2	352	Gtg/Atg																																																																														
NF1	0	MSKCC	GRCh37	17	29490331	29490331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009014-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			409	34	352	0	ENST00000358273.4:c.416C>T	p.Ser139Phe	p.S139F	ENST00000358273	NM_001042492.2	139	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	42	368	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	31	208	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	31	208	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	31	208	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0009404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	78	428	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
XRCC2	0	MSKCC	GRCh37	7	152346185	152346185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	74	887	0	ENST00000359321.1:c.385A>G	p.Thr129Ala	p.T129A	ENST00000359321	NM_005431.1	129	Aca/Gca																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604764	48604765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	56	470	0	ENST00000342988.3:c.1587dup	p.His530ThrfsTer47	p.H530Tfs*47	ENST00000342988	NM_005359.5	529	tta/ttAa																																																																														
PREX2	0	MSKCC	GRCh37	8	69028025	69028025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200550325		P-0009687-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			829	94	490	2	ENST00000288368.4:c.3184C>T	p.Arg1062Cys	p.R1062C	ENST00000288368	NM_024870.2	1062	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	477	619	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
BCOR	0	MSKCC	GRCh37	X	39937109	39937109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	130	576	0	ENST00000378444.4:c.74C>T	p.Ala25Val	p.A25V	ENST00000378444	NM_001123385.1	25	gCg/gTg																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073323	8073323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	454	515	0	ENST00000377482.5:c.1336G>T	p.Asp446Tyr	p.D446Y	ENST00000377482	NM_018948.3	446	Gat/Tat																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55153657	55153657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			665	287	551	0	ENST00000257290.5:c.2623C>A	p.Leu875Met	p.L875M	ENST00000257290	NM_006206.4	875	Ctg/Atg																																																																														
KIT	0	MSKCC	GRCh37	4	55593669	55593669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	555	572	1	ENST00000288135.5:c.1735G>T	p.Asp579Tyr	p.D579Y	ENST00000288135	NM_000222.2	579	Gat/Tat																																																																														
KDR	0	MSKCC	GRCh37	4	55946329	55946329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			101	64	238	0	ENST00000263923.4:c.3850G>C	p.Gly1284Arg	p.G1284R	ENST00000263923	NM_002253.2	1284	Gga/Cga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66242776	66242776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	176	353	1	ENST00000273854.3:c.1796G>T	p.Cys599Phe	p.C599F	ENST00000273854	NM_004439.5	599	tGc/tTc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729968	41729968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	299	581	1	ENST00000242208.4:c.561C>A	p.Asp187Glu	p.D187E	ENST00000242208	NM_002192.2	187	gaC/gaA																																																																														
IKZF1	0	MSKCC	GRCh37	7	50459467	50459467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	184	371	0	ENST00000331340.3:c.756C>G	p.Asp252Glu	p.D252E	ENST00000331340	NM_006060.4	252	gaC/gaG																																																																														
PTPRD	0	MSKCC	GRCh37	9	8492867	8492867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	386	456	0	ENST00000356435.5:c.2462G>T	p.Gly821Val	p.G821V	ENST00000356435		821	gGg/gTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518363	8518363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			318	267	313	0	ENST00000356435.5:c.1028G>T	p.Trp343Leu	p.W343L	ENST00000356435		343	tGg/tTg																																																																														
TET1	0	MSKCC	GRCh37	10	70451003	70451003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	105	517	0	ENST00000373644.4:c.5843C>T	p.Ser1948Phe	p.S1948F	ENST00000373644	NM_030625.2	1948	tCt/tTt																																																																														
KDM5A	0	MSKCC	GRCh37	12	416218	416218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			753	317	478	1	ENST00000399788.2:c.3968G>T	p.Arg1323Leu	p.R1323L	ENST00000399788	NM_001042603.1	1323	cGg/cTg																																																																														
TBX3	0	MSKCC	GRCh37	12	115117759	115117759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	245	479	0	ENST00000257566.3:c.676G>T	p.Asp226Tyr	p.D226Y	ENST00000257566	NM_016569.3	226	Gat/Tat																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36989288	36989288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	204	510	0	ENST00000354822.5:c.47C>A	p.Ala16Glu	p.A16E	ENST00000354822	NM_001079668.2	16	gCg/gAg																																																																														
GREM1	0	MSKCC	GRCh37	15	33023013	33023013	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			118	90	419	0	ENST00000300177.4:c.122A>C	p.His41Pro	p.H41P	ENST00000300177	NM_001191322.1	41	cAc/cCc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10273974	10273974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			156	285	683	0	ENST00000330684.3:c.295G>C	p.Val99Leu	p.V99L	ENST00000330684	NM_001134407.1	99	Gtg/Ctg																																																																														
CTCF	0	MSKCC	GRCh37	16	67645032	67645032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	136	600	0	ENST00000264010.4:c.297G>T	p.Gln99His	p.Q99H	ENST00000264010	NM_006565.3	99	caG/caT																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72923738	72923738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	124	530	0	ENST00000268489.5:c.3340C>G	p.Arg1114Gly	p.R1114G	ENST00000268489	NM_006885.3	1114	Cga/Gga																																																																														
STK11	0	MSKCC	GRCh37	19	1220488	1220488	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	257	575	0	ENST00000326873.7:c.581A>T	p.Asp194Val	p.D194V	ENST00000326873	NM_000455.4	194	gAc/gTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9523275	9523275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	410	631	0	ENST00000353224.5:c.1962G>T	p.Arg654Ser	p.R654S	ENST00000353224	NM_177990.2	654	agG/agT																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714387	40714387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	109	502	0	ENST00000373198.4:c.4010G>T	p.Arg1337Leu	p.R1337L	ENST00000373198	NM_133170.3	1337	cGc/cTc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45796865	45796865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	344	558	0	ENST00000372115.3:c.1423G>T	p.Ala475Ser	p.A475S	ENST00000372115	NM_001048171.1	475	Gcc/Tcc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798613	45798613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	319	614	0	ENST00000372115.3:c.439G>T	p.Asp147Tyr	p.D147Y	ENST00000372115	NM_001048171.1	147	Gac/Tac																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166215	118166215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	102	381	0	ENST00000369448.3:c.725G>T	p.Gly242Val	p.G242V	ENST00000369448	NM_017709.3	242	gGg/gTg																																																																														
AKT1	0	MSKCC	GRCh37	14	105239360	105239360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	147	614	2	ENST00000349310.3:c.1027A>T	p.Met343Leu	p.M343L	ENST00000349310	NM_001014432.1	343	Atg/Ttg																																																																														
RRAS	0	MSKCC	GRCh37	19	50139907	50139907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	124	624	0	ENST00000246792.3:c.422G>A	p.Gly141Glu	p.G141E	ENST00000246792	NM_006270.3	141	gGg/gAg																																																																														
MITF	0	MSKCC	GRCh37	3	69987123	69987123	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1416	263	577	0	ENST00000352241.4:c.505A>T	p.Met169Leu	p.M169L	ENST00000352241	NM_198159.2	169	Atg/Ttg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467598	66467598	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			870	132	434	0	ENST00000273854.3:c.671T>G	p.Val224Gly	p.V224G	ENST00000273854	NM_004439.5	224	gTt/gGt																																																																														
MET	0	MSKCC	GRCh37	7	116413264	116413264	+	intron_variant	Intron	SNP	G	G	A			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	231	836	0	ENST00000397752.3:c.3028+1221G>A		p.*1010*	ENST00000397752	NM_000245.2	1010																																																																															
AMER1	0	MSKCC	GRCh37	X	63411016	63411016	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	352	559	0	ENST00000330258.3:c.2151C>A	p.Cys717Ter	p.C717*	ENST00000330258	NM_152424.3	717	tgC/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	411	855	1	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																														
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	3393	761	1	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
NF1	0	MSKCC	GRCh37	17	29559089	29559089	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0010053-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			58	71	130	0	ENST00000358273.4:c.3198-2A>G		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0010563-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	765	424	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
TP53	0	MSKCC	GRCh37	17	7579559	7579559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010563-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	246	493	0	ENST00000269305.4:c.128delT	p.Leu43Ter	p.L43*	ENST00000269305	NM_001126112.2	43	tTg/tg																																																																														
MALT1	0	MSKCC	GRCh37	18	56367749	56367749	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010563-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	82	323	0	ENST00000348428.3:c.575T>G	p.Val192Gly	p.V192G	ENST00000348428	NM_006785.3	192	gTt/gGt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89176389	89176389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010563-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	90	245	0	ENST00000336596.2:c.119G>T	p.Gly40Val	p.G40V	ENST00000336596	NM_005233.5	40	gGg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010837-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			335	33	554	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010837-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			441	35	862	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921430	39921430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010837-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			380	28	725	2	ENST00000378444.4:c.4390G>A	p.Glu1464Lys	p.E1464K	ENST00000378444	NM_001123385.1	1464	Gag/Aag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971145	21971146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010837-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			165	22	253	0	ENST00000304494.5:c.212dup	p.Asn71LysfsTer49	p.N71Kfs*49	ENST00000304494	NM_000077.4	71	aac/aaAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971145	21971146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010837-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			165	22	253	0	ENST00000304494.5:c.212dup	p.Asn71LysfsTer49	p.N71Kfs*49	ENST00000304494	NM_000077.4	71	aac/aaAc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971145	21971146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010837-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			165	22	253	0	ENST00000304494.5:c.212dup	p.Asn71LysfsTer49	p.N71Kfs*49	ENST00000304494	NM_000077.4	71	aac/aaAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	119	264	0				ENST00000310581	NM_198253.2																																																																																
NTRK2	0	MSKCC	GRCh37	9	87339223	87339223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	213	413	0	ENST00000277120.3:c.805G>A	p.Glu269Lys	p.E269K	ENST00000277120		269	Gaa/Aaa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967960	93967960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	315	547	0	ENST00000369303.4:c.1967G>A	p.Gly656Glu	p.G656E	ENST00000369303	NM_004440.3	656	gGg/gAg																																																																														
FAM175A	0	MSKCC	GRCh37	4	84403342	84403342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	276	416	0	ENST00000321945.7:c.143C>T	p.Ser48Phe	p.S48F	ENST00000321945	NM_139076.2	48	tCc/tTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40710603	40710603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	229	324	0	ENST00000373198.4:c.4248G>A	p.Met1416Ile	p.M1416I	ENST00000373198	NM_133170.3	1416	atG/atA																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843533	156843533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	586	473	0	ENST00000524377.1:c.959C>T	p.Ser320Phe	p.S320F	ENST00000524377	NM_002529.3	320	tCc/tTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101072	27101072	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	300	481	0	ENST00000324856.7:c.4354C>T	p.Gln1452Ter	p.Q1452*	ENST00000324856	NM_006015.4	1452	Cag/Tag																																																																														
MPL	0	MSKCC	GRCh37	1	43806063	43806063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	325	514	1	ENST00000372470.3:c.859C>T	p.Leu287Phe	p.L287F	ENST00000372470	NM_005373.2	287	Ctt/Ttt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120493422	120493422	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	248	435	0	ENST00000256646.2:c.2404A>T	p.Asn802Tyr	p.N802Y	ENST00000256646	NM_024408.3	802	Aat/Tat																																																																														
ERBB4	0	MSKCC	GRCh37	2	212576880	212576880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	109	258	0	ENST00000342788.4:c.1019G>A	p.Gly340Glu	p.G340E	ENST00000342788	NM_005235.2	340	gGa/gAa																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713775	30713775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	205	280	0	ENST00000359013.4:c.1175C>T	p.Pro392Leu	p.P392L	ENST00000359013	NM_001024847.2	392	cCa/cTa																																																																														
SETD2	0	MSKCC	GRCh37	3	47127759	47127759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	262	334	0	ENST00000409792.3:c.5323G>T	p.Gly1775Trp	p.G1775W	ENST00000409792	NM_014159.6	1775	Ggg/Tgg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52598087	52598087	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1232	255	517	1	ENST00000394830.3:c.3779A>T	p.Asp1260Val	p.D1260V	ENST00000394830	NM_018313.4	1260	gAt/gTt																																																																														
TERT	0	MSKCC	GRCh37	5	1294421	1294421	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	163	304	0	ENST00000310581.5:c.580C>T	p.Arg194Ter	p.R194*	ENST00000310581	NM_198253.2	194	Cga/Tga																																																																														
FGFR4	0	MSKCC	GRCh37	5	176519768	176519768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	256	393	0	ENST00000292408.4:c.1040G>A	p.Trp347Ter	p.W347*	ENST00000292408	NM_213647.1	347	tGg/tAg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066617	94066617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	376	664	0	ENST00000369303.4:c.1142C>T	p.Pro381Leu	p.P381L	ENST00000369303	NM_004440.3	381	cCc/cTc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527974	157527974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	156	187	0	ENST00000346085.5:c.5699G>A	p.Ser1900Asn	p.S1900N	ENST00000346085	NM_020732.3	1900	aGc/aAc																																																																														
CARD11	0	MSKCC	GRCh37	7	2968326	2968326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	252	324	1	ENST00000396946.4:c.1660C>T	p.Pro554Ser	p.P554S	ENST00000396946	NM_032415.4	554	Ccc/Tcc																																																																														
MLL3	0	MSKCC	GRCh37	7	152132847	152132847	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	257	386	0	ENST00000262189.6:c.25G>C	p.Val9Leu	p.V9L	ENST00000262189	NM_170606.2	9	Gtg/Ctg																																																																														
SYK	0	MSKCC	GRCh37	9	93624580	93624580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	286	429	0	ENST00000375746.1:c.671G>A	p.Gly224Glu	p.G224E	ENST00000375746	NM_001174167.1	224	gGg/gAg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900146	101900146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	129	311	0	ENST00000374994.4:c.580C>T	p.Pro194Ser	p.P194S	ENST00000374994	NM_004612.2	194	Cca/Tca																																																																														
ABL1	0	MSKCC	GRCh37	9	133738160	133738160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	224	360	0	ENST00000318560.5:c.560C>T	p.Ser187Phe	p.S187F	ENST00000318560	NM_005157.4	187	tCc/tTc																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67202485	67202485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	351	526	0	ENST00000312629.5:c.1294G>A	p.Gly432Arg	p.G432R	ENST00000312629	NM_003952.2	432	Ggg/Agg																																																																														
CBL	0	MSKCC	GRCh37	11	119148876	119148876	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	117	234	0	ENST00000264033.4:c.1096G>T	p.Glu366Ter	p.E366*	ENST00000264033	NM_005188.3	366	Gaa/Taa																																																																														
CBL	0	MSKCC	GRCh37	11	119170450	119170450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	268	345	0	ENST00000264033.4:c.2680G>A	p.Glu894Lys	p.E894K	ENST00000264033	NM_005188.3	894	Gaa/Aaa																																																																														
MLL2	0	MSKCC	GRCh37	12	49432338	49432338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	383	505	2	ENST00000301067.7:c.8801C>T	p.Pro2934Leu	p.P2934L	ENST00000301067	NM_003482.3	2934	cCc/cTc																																																																														
POLE	0	MSKCC	GRCh37	12	133201495	133201495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	286	456	0	ENST00000320574.5:c.6743C>T	p.Thr2248Ile	p.T2248I	ENST00000320574	NM_006231.2	2248	aCc/aTc																																																																														
FLT3	0	MSKCC	GRCh37	13	28622575	28622575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	180	231	0	ENST00000241453.7:c.1042G>C	p.Gly348Arg	p.G348R	ENST00000241453	NM_004119.2	348	Gga/Cga																																																																														
IGF1R	0	MSKCC	GRCh37	15	99459355	99459355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	190	318	0	ENST00000268035.6:c.1991C>G	p.Ser664Cys	p.S664C	ENST00000268035	NM_000875.3	664	tCc/tGc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858751	9858751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	214	332	0	ENST00000330684.3:c.2650G>A	p.Asp884Asn	p.D884N	ENST00000330684	NM_001134407.1	884	Gac/Aac																																																																														
CDH1	0	MSKCC	GRCh37	16	68847319	68847319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	395	511	0	ENST00000261769.5:c.1241C>T	p.Thr414Ile	p.T414I	ENST00000261769	NM_004360.3	414	aCc/aTc																																																																														
RARA	0	MSKCC	GRCh37	17	38487555	38487555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	429	559	0	ENST00000254066.5:c.85C>T	p.Pro29Ser	p.P29S	ENST00000254066	NM_000964.3	29	Ccc/Tcc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222945	5222945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	227	372	0	ENST00000357368.4:c.2858C>T	p.Pro953Leu	p.P953L	ENST00000357368	NM_002850.3	953	cCc/cTc																																																																														
POLD1	0	MSKCC	GRCh37	19	50902705	50902705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	428	615	0	ENST00000440232.2:c.280C>T	p.Leu94Phe	p.L94F	ENST00000440232	NM_002691.3	94	Ctc/Ttc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713470	40713470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	229	316	3	ENST00000373198.4:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000373198	NM_133170.3	1349	Cgt/Tgt																																																																														
KIT	0	MSKCC	GRCh37	4	55593660	55593662	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	460	382	0	ENST00000288135.5:c.1727_1729del	p.Leu576del	p.L576del	ENST00000288135	NM_000222.2	576	CTT/-																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45655402	45655403	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0011047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	206	392	0	ENST00000407780.3:c.449_450delinsTT	p.Ser150Phe	p.S150F	ENST00000407780	NM_001283052.1	150	tCC/tTT																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0012095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	18	349	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0012095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	12	310	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0012095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	23	298	0	ENST00000288602.6:c.1798_1799delGTinsAG	p.Val600Arg	p.V600R	ENST00000288602	NM_004333.4	600	GTg/AGg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971201	21971204	+	frameshift_variant	Frame_Shift_Del	DEL	TCAT	TCAT	-			P-0012095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	12	144	0	ENST00000304494.5:c.154_157del	p.Met52Ter	p.M52*	ENST00000304494	NM_000077.4	52	ATGAtg/tg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971201	21971204	+	frameshift_variant	Frame_Shift_Del	DEL	TCAT	TCAT	-			P-0012095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	12	144	0	ENST00000304494.5:c.154_157del	p.Met52Ter	p.M52*	ENST00000304494	NM_000077.4	52	ATGAtg/tg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971201	21971204	+	frameshift_variant	Frame_Shift_Del	DEL	TCAT	TCAT	-			P-0012095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	12	144	0	ENST00000304494.5:c.154_157del	p.Met52Ter	p.M52*	ENST00000304494	NM_000077.4	52	ATGAtg/tg																																																																														
TP53	0	MSKCC	GRCh37	17	7579315	7579316	+	missense_variant	Missense_Mutation	DNP	GC	GC	TA			P-0012095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	13	306	1	ENST00000269305.4:c.371_372delinsTA	p.Cys124Leu	p.C124L	ENST00000269305	NM_001126112.2	124	tGC/tTA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	51	478	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	77	496	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	25	197	0	ENST00000304494.5:c.188T>A	p.Leu63Gln	p.L63Q	ENST00000304494	NM_000077.4	63	cTg/cAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	25	197	0	ENST00000304494.5:c.188T>A	p.Leu63Gln	p.L63Q	ENST00000304494	NM_000077.4	63	cTg/cAg																																																																														
STK11	0	MSKCC	GRCh37	19	1219390	1219391	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCCA			P-0012661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	51	528	0	ENST00000326873.7:c.443_447dup	p.Val150SerfsTer13	p.V150Sfs*13	ENST00000326873	NM_000455.4	148	ttc/tTCCCAtc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971066	21971068	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0012661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	40	333	0	ENST00000304494.5:c.290_292del	p.Leu97del	p.L97del	ENST00000304494	NM_000077.4	97	cTGCac/cac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971066	21971068	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0012661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	40	333	0	ENST00000304494.5:c.290_292del	p.Leu97del	p.L97del	ENST00000304494	NM_000077.4	97	cTGCac/cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0012695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	273	440	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	270	593	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																														
POLE	0	MSKCC	GRCh37	12	133244115	133244115	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200825008		P-0012695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	214	362	1	ENST00000320574.5:c.2293C>T	p.Arg765Cys	p.R765C	ENST00000320574	NM_006231.2	765	Cgt/Tgt																																																																														
CTCF	0	MSKCC	GRCh37	16	67645905	67645905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	284	425	1	ENST00000264010.4:c.833G>A	p.Arg278His	p.R278H	ENST00000264010	NM_006565.3	278	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112175271	112175272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	325	341	0	ENST00000257430.4:c.3981dup	p.Gln1328ThrfsTer4	p.Q1328Tfs*4	ENST00000257430	NM_000038.5	1327	tca/tcAa																																																																														
PAK1	0	MSKCC	GRCh37	11	77043899	77043900	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAGG			P-0012695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1184	272	503	0	ENST00000356341.3:c.1422_1426dup	p.Ile476ThrfsTer25	p.I476Tfs*25	ENST00000356341	NM_002576.4	476	att/aCCTCAtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			763	34	583	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0013328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			230	32	216	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0013328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			230	32	216	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			563	46	506	1	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0013328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			230	32	216	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0013411-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	54	496	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
CBFB	0	MSKCC	GRCh37	16	67063347	67063347	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013411-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	57	383	0	ENST00000412916.2:c.37G>T	p.Glu13Ter	p.E13*	ENST00000412916		13	Gag/Tag																																																																														
CDH1	0	MSKCC	GRCh37	16	68847167	68847249	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCTAGCAGTCTTGGTACTTTGTAAATGACACATCTCTTTGCTCTGCAGTACAAGGGTCAGGTGCCTGAGAACGAGGCTAACG	TGCTAGCAGTCTTGGTACTTTGTAAATGACACATCTCTTTGCTCTGCAGTACAAGGGTCAGGTGCCTGAGAACGAGGCTAACG	-			P-0013411-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	50	324	0	ENST00000261769.5:c.1138-48_1172del		p.X380_splice	ENST00000261769	NM_004360.3	380																																																																															
GLI1	0	MSKCC	GRCh37	12	57864652	57864652	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141789719		P-0013411-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			765	69	953	0	ENST00000228682.2:c.2129G>A	p.Gly710Glu	p.G710E	ENST00000228682	NM_005269.2	710	gGg/gAg																																																																														
RARA	0	MSKCC	GRCh37	17	38510612	38510612	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013411-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			849	59	773	0	ENST00000254066.5:c.866G>C	p.Gly289Ala	p.G289A	ENST00000254066	NM_000964.3	289	gGg/gCg																																																																														
TP53	0	MSKCC	GRCh37	17	7577152	7577154	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACC	ACC	-			P-0013650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	193	566	0	ENST00000269305.4:c.784_786delGGT	p.Gly262del	p.G262del	ENST00000269305	NM_001126112.2	262	GGT/-																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710585	114710585	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	155	901	0	ENST00000543371.1:c.70G>T	p.Glu24Ter	p.E24*	ENST00000543371	NM_001198531.1	24	Gag/Tag																																																																														
RUNX1	0	MSKCC	GRCh37	21	36206696	36206760	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGGTACTTACCCTGCATCTGACTCTGAGGCTGAGGGTTAAAGGCAGTGGAGTGGTTCAGGGAGG	CTGGTACTTACCCTGCATCTGACTCTGAGGCTGAGGGTTAAAGGCAGTGGAGTGGTTCAGGGAGG	-			P-0013650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	66	385	0	ENST00000300305.3:c.752_805+11del		p.X251_splice	ENST00000300305		251																																																																															
SOX2	0	MSKCC	GRCh37	3	181430660	181430660	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	49	327	0	ENST00000325404.1:c.512A>C	p.Tyr171Ser	p.Y171S	ENST00000325404	NM_003106.3	171	tAc/tCc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589577	67589609	+	inframe_deletion	In_Frame_Del	DEL	AAAAATTACATGAATATAACACTCAGTTTCAAG	AAAAATTACATGAATATAACACTCAGTTTCAAG	-			P-0013650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	101	315	0	ENST00000274335.5:c.1345_1377del	p.Leu449_Lys459del	p.L449_K459del	ENST00000274335		447	aAAAAATTACATGAATATAACACTCAGTTTCAAGaa/aaa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157222591	157222591	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	153	565	0	ENST00000346085.5:c.1862del	p.Pro621ArgfsTer47	p.P621Rfs*47	ENST00000346085	NM_020732.3	620	Ccc/cc																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944813	31944813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			797	218	649	0	ENST00000340398.3:c.288C>A	p.Ser96Arg	p.S96R	ENST00000340398	NM_001013699.2	96	agC/agA																																																																														
ARID2	0	MSKCC	GRCh37	12	46231391	46231391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	126	435	0	ENST00000334344.6:c.1231G>A	p.Asp411Asn	p.D411N	ENST00000334344	NM_152641.2	411	Gat/Aat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433066	49433066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	127	740	0	ENST00000301067.7:c.8305G>A	p.Asp2769Asn	p.D2769N	ENST00000301067	NM_003482.3	2769	Gat/Aat																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910545	32910545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	77	352	0	ENST00000380152.3:c.2053G>A	p.Asp685Asn	p.D685N	ENST00000380152		685	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			733	342	659	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
EZH1	0	MSKCC	GRCh37	17	40856680	40856680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	76	365	0	ENST00000428826.2:c.1957G>A	p.Asp653Asn	p.D653N	ENST00000428826		653	Gat/Aat																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	156	293	0	ENST00000342988.3:c.1478A>T	p.Asp493Val	p.D493V	ENST00000342988	NM_005359.5	493	gAt/gTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221318	1221319	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			653	311	629	2	ENST00000326873.7:c.841_842delinsT	p.Pro281CysfsTer6	p.P281Cfs*6	ENST00000326873	NM_000455.4	281	CCg/Tg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216497	36216497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			838	519	809	0	ENST00000222270.7:c.3760G>T	p.Val1254Phe	p.V1254F	ENST00000222270	NM_014727.1	1254	Gtc/Ttc																																																																														
AKT2	0	MSKCC	GRCh37	19	40741972	40741972	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			791	449	743	0	ENST00000392038.2:c.1000T>G	p.Trp334Gly	p.W334G	ENST00000392038	NM_001626.4	334	Tgg/Ggg																																																																														
XPO1	0	MSKCC	GRCh37	2	61711165	61711165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			992	53	647	0	ENST00000401558.2:c.2584G>A	p.Ala862Thr	p.A862T	ENST00000401558	NM_003400.3	862	Gca/Aca																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098815	178098815	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	144	705	1	ENST00000397062.3:c.230A>T	p.Asp77Val	p.D77V	ENST00000397062	NM_006164.4	77	gAt/gTt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024668	31024668	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	273	549	0	ENST00000375687.4:c.4153A>T	p.Arg1385Trp	p.R1385W	ENST00000375687	NM_015338.5	1385	Agg/Tgg																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24143269	24143269	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	243	711	0	ENST00000263121.7:c.500+1G>A		p.X167_splice	ENST00000263121	NM_003073.3	167																																																																															
PDGFRA	0	MSKCC	GRCh37	4	55131217	55131217	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	170	321	0	ENST00000257290.5:c.759+1G>T		p.X253_splice	ENST00000257290	NM_006206.4	253																																																																															
EPHA5	0	MSKCC	GRCh37	4	66467609	66467609	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	27	336	0	ENST00000273854.3:c.660C>A	p.Cys220Ter	p.C220*	ENST00000273854	NM_004439.5	220	tgC/tgA																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553631	106553631	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	122	337	0	ENST00000369096.4:c.1596A>T	p.Lys532Asn	p.K532N	ENST00000369096	NM_001198.3	532	aaA/aaT																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106515161	106515161	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			800	160	453	0	ENST00000359195.3:c.2304A>T	p.Lys768Asn	p.K768N	ENST00000359195	NM_002649.2	768	aaA/aaT																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106545602	106545602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			716	163	492	0	ENST00000359195.3:c.3079C>A	p.Leu1027Met	p.L1027M	ENST00000359195	NM_002649.2	1027	Ctg/Atg																																																																														
BRAF	0	MSKCC	GRCh37	7	140439656	140439656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013755-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	147	395	0	ENST00000288602.6:c.2083G>C	p.Glu695Gln	p.E695Q	ENST00000288602	NM_004333.4	695	Gag/Cag																																																																														
RB1	0	MSKCC	GRCh37	13	48923160	48923160	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			155	45	250	0	ENST00000267163.4:c.607+1G>T		p.X203_splice	ENST00000267163	NM_000321.2	203																																																																															
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0013934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	405	798	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
CCND1	0	MSKCC	GRCh37	11	69462772	69462772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	85	524	0	ENST00000227507.2:c.585C>A	p.Phe195Leu	p.F195L	ENST00000227507	NM_053056.2	195	ttC/ttA																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870915	12870916	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	131	363	0	ENST00000228872.4:c.143_144del	p.His48LeufsTer76	p.H48Lfs*76	ENST00000228872	NM_004064.3	48	CAc/c																																																																														
SF3B1	0	MSKCC	GRCh37	2	198264998	198264998	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	74	418	0	ENST00000335508.6:c.2879T>C	p.Val960Ala	p.V960A	ENST00000335508	NM_012433.2	960	gTt/gCt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468480	89468480	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	112	484	0	ENST00000336596.2:c.2014A>T	p.Ser672Cys	p.S672C	ENST00000336596	NM_005233.5	672	Agc/Tgc																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032278	26032278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	32	274	0	ENST00000244661.2:c.11C>G	p.Thr4Ser	p.T4S	ENST00000244661	NM_003537.3	4	aCt/aGt																																																																														
RTEL1	0	MSKCC	GRCh37	20	62293892	62293892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	69	772	0	ENST00000508582.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000508582		154	cCc/cTc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15961832	15961832	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			643	36	549	0	ENST00000268712.3:c.5963A>C	p.Lys1988Thr	p.K1988T	ENST00000268712	NM_006311.3	1988	aAa/aCa																																																																														
CARM1	0	MSKCC	GRCh37	19	10982478	10982478	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013934-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			84	34	72	0	ENST00000327064.4:c.101del	p.Gly34AlafsTer91	p.G34Afs*91	ENST00000327064	NM_199141.1	34	Ggc/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	49	503	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	71	589	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	46	399	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533099	63533099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	72	441	0	ENST00000307078.5:c.1795G>T	p.Ala599Ser	p.A599S	ENST00000307078	NM_004655.3	599	Gcc/Tcc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87325622	87325622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	57	352	2	ENST00000277120.3:c.499T>C	p.Ser167Pro	p.S167P	ENST00000277120		167	Tcc/Ccc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929401	44929407	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGAC	AGCAGAC	-			P-0015206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	61	294	0	ENST00000377967.4:c.2502_2508delGCAGACA	p.Gln835ProfsTer30	p.Q835Pfs*30	ENST00000377967	NM_021140.2	834	gAGCAGACa/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7579510	7580293	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	ACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCCCTCCAGGTCCCCAGCCCTCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCAGGAAGTCTGAAAGACAAGAGCAGAAAGTCAGTCCCATGGAATTTTCGCTTCCCACAGGTCTCTGCTAGGGGGCTGGGGTTGGGGTGGGGGTGGTGGGCCTGCCCTTCCAATGGATCCACTCACAGTTTCCATAGGTCTGAAAATGTTTCCTGACTCAGAGGGGGCTCGACGCTAGGATCTGACTGCGGCTCCTCCATGGCAGTGACCCGGAAGGCAGTCTGGCTGCTGCAAGAGGAAAAGTGGGGATCCAGCATGAGACACTTCCAACCCTGGGTCACCTGGGCCTGCAGAGAAGGAACCCCCTCCCCCAACACCATGCCAGTGTCTGAGACAGCTCGGCTTCCTGTGGAGCAGGAAAAGAATGGCTGCTTCACATTCTCTCTTCCAATGTTTCACCACAACCCAAGCACTCCTGCCCCACCCCTCACCAGCCATGCACTTCTTTGAGGAAAAGACAATCAGAGAGGGACTTCCAACCTTCCCACCACTAAATCCCCAAGACTTCCTAAATGTGCACCCTATTCCCAACTCCCTTCCTGTATTTTTTTTTTTTTTTTGAGATGGAGTCTCTCTCTGTC	ACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCCCTCCAGGTCCCCAGCCCTCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCAGGAAGTCTGAAAGACAAGAGCAGAAAGTCAGTCCCATGGAATTTTCGCTTCCCACAGGTCTCTGCTAGGGGGCTGGGGTTGGGGTGGGGGTGGTGGGCCTGCCCTTCCAATGGATCCACTCACAGTTTCCATAGGTCTGAAAATGTTTCCTGACTCAGAGGGGGCTCGACGCTAGGATCTGACTGCGGCTCCTCCATGGCAGTGACCCGGAAGGCAGTCTGGCTGCTGCAAGAGGAAAAGTGGGGATCCAGCATGAGACACTTCCAACCCTGGGTCACCTGGGCCTGCAGAGAAGGAACCCCCTCCCCCAACACCATGCCAGTGTCTGAGACAGCTCGGCTTCCTGTGGAGCAGGAAAAGAATGGCTGCTTCACATTCTCTCTTCCAATGTTTCACCACAACCCAAGCACTCCTGCCCCACCCCTCACCAGCCATGCACTTCTTTGAGGAAAAGACAATCAGAGAGGGACTTCCAACCTTCCCACCACTAAATCCCCAAGACTTCCTAAATGTGCACCCTATTCCCAACTCCCTTCCTGTATTTTTTTTTTTTTTTTGAGATGGAGTCTCTCTCTGTC	-			P-0015206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	61	591	0	ENST00000269305.4:c.-28-353_177del		p.X10_splice	ENST00000269305	NM_001126112.2	10																																																																															
NOTCH3	0	MSKCC	GRCh37	19	15288475	15288475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	25	268	0	ENST00000263388.2:c.4264G>C	p.Gly1422Arg	p.G1422R	ENST00000263388	NM_000435.2	1422	Ggc/Cgc																																																																														
MET	0	MSKCC	GRCh37	7	116411915	116411915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			493	83	600	0	ENST00000397752.3:c.2900A>G	p.Glu967Gly	p.E967G	ENST00000397752	NM_000245.2	967	gAa/gGa																																																																														
MED12	0	MSKCC	GRCh37	X	70356152	70356152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	45	297	0	ENST00000374080.3:c.5047C>A	p.Gln1683Lys	p.Q1683K	ENST00000374080		1683	Cag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111478	8111479	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015351-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			675	247	709	0	ENST00000346208.3:c.966dup	p.Thr323HisfsTer29	p.T323Hfs*29	ENST00000346208		322	acc/aCcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	27	401	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	51	779	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0015390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	27	332	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0015390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	27	332	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0015390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	27	332	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
MET	0	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015601-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			837	116	705	1	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
GNAS	0	MSKCC	GRCh37	20	57485091	57485091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015601-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	41	346	0	ENST00000371085.3:c.925G>C	p.Glu309Gln	p.E309Q	ENST00000371085	NM_000516.4	309	Gag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	272	433	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	161	538	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	161	538	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
STK11	0	MSKCC	GRCh37	19	1220649	1220649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	256	725	2	ENST00000326873.7:c.667G>A	p.Glu223Lys	p.E223K	ENST00000326873	NM_000455.4	223	Gag/Aag																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	161	538	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ATM	0	MSKCC	GRCh37	11	108141992	108141998	+	frameshift_variant	Frame_Shift_Del	DEL	TGTATCG	TGTATCG	-			P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	77	420	0	ENST00000278616.4:c.2937_2943delGTATCGT	p.Leu979PhefsTer11	p.L979Ffs*11	ENST00000278616	NM_000051.3	979	tTGTATCGt/tt																																																																														
DAXX	0	MSKCC	GRCh37	6	33289167	33289167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	58	432	1	ENST00000374542.5:c.385G>A	p.Glu129Lys	p.E129K	ENST00000374542	NM_001141970.1	129	Gag/Aag																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101904946	101904946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	85	271	0	ENST00000374994.4:c.934G>A	p.Gly312Ser	p.G312S	ENST00000374994	NM_004612.2	312	Ggt/Agt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	47	359	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	47	359	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	47	359	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0015824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	91	615	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	0	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	94	769	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106138	27106138	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	82	330	0	ENST00000324856.7:c.5749A>G	p.Thr1917Ala	p.T1917A	ENST00000324856	NM_006015.4	1917	Act/Gct																																																																														
PTEN	0	MSKCC	GRCh37	10	89692780	89692780	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	67	228	1	ENST00000371953.3:c.264T>A	p.Tyr88Ter	p.Y88*	ENST00000371953	NM_000314.4	88	taT/taA																																																																														
CDH1	0	MSKCC	GRCh37	16	68835622	68835622	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	89	370	0	ENST00000261769.5:c.213delC	p.Asp72ThrfsTer11	p.D72Tfs*11	ENST00000261769	NM_004360.3	71	ctC/ct																																																																														
ESR1	0	MSKCC	GRCh37	6	152332914	152332914	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	50	217	0	ENST00000206249.3:c.1220A>T	p.Asn407Ile	p.N407I	ENST00000206249	NM_000125.3	407	aAc/aTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023118	27023124	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGGGC	ACGGGGC	CCGGGT			P-0015981-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	21	71	0	ENST00000324856.7:c.224_230delinsCCGGGT	p.Asp75AlafsTer26	p.D75Afs*26	ENST00000324856	NM_006015.4	75	gACGGGGCc/gCCGGGTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0016041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			116	44	318	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0016041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	73	533	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			65	30	252	0	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55																																																																															
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0016041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	57	311	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
MAP3K1	0	MSKCC	GRCh37	5	56177451	56177452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0016041-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			111	29	280	0	ENST00000399503.3:c.2426_2427dup	p.Ser810ThrfsTer13	p.S810Tfs*13	ENST00000399503	NM_005921.1	808	-/CA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	28	957	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0016407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	22	491	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0016407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	22	491	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
EGFR	0	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	8	751	0	ENST00000275493.2:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000275493	NM_005228.3	761	Gat/Aat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0016407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	22	491	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	17	663	0	ENST00000342988.3:c.1052A>G	p.Asp351Gly	p.D351G	ENST00000342988	NM_005359.5	351	gAt/gGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	498	516	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739068	145739068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	344	347	0	ENST00000428558.2:c.2087G>A	p.Arg696His	p.R696H	ENST00000428558	NM_004260.3	696	cGt/cAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440453	49440453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	576	539	0	ENST00000301067.7:c.4357C>T	p.His1453Tyr	p.H1453Y	ENST00000301067	NM_003482.3	1453	Cac/Tac																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434491	121434491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	544	589	0	ENST00000257555.6:c.1255C>A	p.Pro419Thr	p.P419T	ENST00000257555		419	Cct/Act																																																																														
RB1	0	MSKCC	GRCh37	13	48954215	48954249	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTAGGTAAATTTTTTACTTTTAGTAAAAAATTT	TTTTAGGTAAATTTTTTACTTTTAGTAAAAAATTT	-			P-0016476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	49	310	0	ENST00000267163.4:c.1420_1421+33del		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
ZFHX3	0	MSKCC	GRCh37	16	72830807	72830807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	480	455	0	ENST00000268489.5:c.5774G>T	p.Gly1925Val	p.G1925V	ENST00000268489	NM_006885.3	1925	gGt/gTt																																																																														
FANCA	0	MSKCC	GRCh37	16	89882340	89882340	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	491	580	0	ENST00000389301.3:c.134A>T	p.Glu45Val	p.E45V	ENST00000389301	NM_000135.2	45	gAa/gTa																																																																														
FAT1	0	MSKCC	GRCh37	4	187518143	187518143	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	414	525	0	ENST00000441802.2:c.12551del	p.Gly4184GlufsTer22	p.G4184Efs*22	ENST00000441802	NM_005245.3	4184	gGa/ga																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20153912	20153912	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	467	263	0	ENST00000379607.5:c.148A>G	p.Met50Val	p.M50V	ENST00000379607	NM_001412.3	50	Atg/Gtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			101	404	524	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	172	266	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	329	526	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
PTEN	0	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	599	298	0	ENST00000371953.3:c.48T>A	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taA																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132542	11132542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			517	372	556	0	ENST00000344626.4:c.2758G>A	p.Glu920Lys	p.E920K	ENST00000344626	NM_003072.3	920	Gag/Aag																																																																														
MED12	0	MSKCC	GRCh37	X	70338671	70338671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	363	523	0	ENST00000374080.3:c.67G>T	p.Asp23Tyr	p.D23Y	ENST00000374080		23	Gat/Tat																																																																														
ACVR1	0	MSKCC	GRCh37	2	158617533	158617533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	299	396	0	ENST00000263640.3:c.1123C>T	p.Arg375Cys	p.R375C	ENST00000263640	NM_001105.4	375	Cgt/Tgt																																																																														
ERF	0	MSKCC	GRCh37	19	42753615	42753615	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			573	418	691	0	ENST00000222329.4:c.649T>G	p.Phe217Val	p.F217V	ENST00000222329	NM_006494.2	217	Ttc/Gtc																																																																														
FAT1	0	MSKCC	GRCh37	4	187521425	187521425	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016537-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	252	420	0	ENST00000441802.2:c.11730G>T	p.Gln3910His	p.Q3910H	ENST00000441802	NM_005245.3	3910	caG/caT																																																																														
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016584-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	177	589	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016584-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	147	604	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444737	49444737	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016811-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			161	347	675	0	ENST00000301067.7:c.2729C>G	p.Pro910Arg	p.P910R	ENST00000301067	NM_003482.3	910	cCt/cGt																																																																														
RB1	0	MSKCC	GRCh37	13	48954343	48954344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCGCTCT			P-0016811-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			187	128	269	0	ENST00000267163.4:c.1467_1474dup	p.Glu492AlafsTer6	p.E492Afs*6	ENST00000267163	NM_000321.2	488	-/TGCGCTCT																																																																														
CREBBP	0	MSKCC	GRCh37	16	3823802	3823802	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016811-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			108	281	395	0	ENST00000262367.5:c.2413del	p.Ala805ArgfsTer2	p.A805Rfs*2	ENST00000262367	NM_004380.2	805	Gcg/cg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576858	7576858	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016811-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			145	378	415	0	ENST00000269305.4:c.988del	p.Leu330PhefsTer15	p.L330Ffs*15	ENST00000269305	NM_001126112.2	330	Ctt/tt																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31375163	31375163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016811-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			611	144	546	2	ENST00000328111.2:c.560C>T	p.Pro187Leu	p.P187L	ENST00000328111	NM_006892.3	187	cCc/cTc																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114546	73114547	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0016811-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			43	72	182	0	ENST00000356692.5:c.929_930del		p.X310_splice	ENST00000356692		310																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	241	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	128	585	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943641	9943641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	171	569	0	ENST00000330684.3:c.1300G>A	p.Val434Met	p.V434M	ENST00000330684	NM_001134407.1	434	Gtg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7577137	7577137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	389	612	0	ENST00000269305.4:c.801del	p.Asn268ThrfsTer77	p.N268Tfs*77	ENST00000269305	NM_001126112.2	267	cgG/cg																																																																														
APC	0	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0016847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	96	380	0	ENST00000257430.4:c.834+1G>C		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																															
APC	0	MSKCC	GRCh37	5	112174759	112174762	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0016847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	191	353	0	ENST00000257430.4:c.3471_3474del	p.Glu1157AspfsTer7	p.E1157Dfs*7	ENST00000257430	NM_000038.5	1156	gaAGAG/ga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584512	48584555	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGGGGGCAGCCATAGTGAAGGACTGTTGCAGATAGCATCAGG	CTGGGGGGCAGCCATAGTGAAGGACTGTTGCAGATAGCATCAGG	-			P-0016847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	91	391	0	ENST00000342988.3:c.685_728del	p.Leu229AlafsTer20	p.L229Afs*20	ENST00000342988	NM_005359.5	229	CTGGGGGGCAGCCATAGTGAAGGACTGTTGCAGATAGCATCAGGg/g																																																																														
ATRX	0	MSKCC	GRCh37	X	76937152	76937152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016847-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	27	281	0	ENST00000373344.5:c.3596A>G	p.Asp1199Gly	p.D1199G	ENST00000373344	NM_000489.3	1199	gAc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	42	628	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0016926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	14	448	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	21	428	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0016926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	25	303	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0016926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	25	303	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0016926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	25	303	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
AXIN2	0	MSKCC	GRCh37	17	63532603	63532603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	32	584	0	ENST00000307078.5:c.1976G>A	p.Arg659Gln	p.R659Q	ENST00000307078	NM_004655.3	659	cGg/cAg																																																																														
JAK1	0	MSKCC	GRCh37	1	65305399	65305399	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017698-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	188	486	0	ENST00000342505.4:c.2729T>C	p.Leu910Pro	p.L910P	ENST00000342505	NM_002227.2	910	cTg/cCg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017698-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	142	346	0	ENST00000349496.5:c.1161T>G	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaG																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106426	27106426	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017698-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	193	445	0	ENST00000324856.7:c.6038delA	p.Lys2013SerfsTer2	p.K2013Sfs*2	ENST00000324856	NM_006015.4	2013	Aag/ag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266107	41266107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017698-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			214	114	295	0	ENST00000349496.5:c.104T>A	p.Ile35Asn	p.I35N	ENST00000349496	NM_001904.3	35	aTc/aAc																																																																														
PREX2	0	MSKCC	GRCh37	8	68989651	68989651	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017698-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	261	432	0	ENST00000288368.4:c.1589A>G	p.Glu530Gly	p.E530G	ENST00000288368	NM_024870.2	530	gAa/gGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	129	958	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	40	827	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27102199	27102199	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	33	529	0	ENST00000324856.7:c.5124+1G>A		p.X1708_splice	ENST00000324856	NM_006015.4	1708																																																																															
FGF3	0	MSKCC	GRCh37	11	69625143	69625143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	52	967	0	ENST00000334134.2:c.650C>T	p.Pro217Leu	p.P217L	ENST00000334134	NM_005247.2	217	cCg/cTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0017893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	55	1092	0	ENST00000304494.5:c.457G>C	p.Asp153His	p.D153H	ENST00000304494	NM_000077.4	153	Gac/Cac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0017893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	55	1092	0	ENST00000304494.5:c.457G>C	p.Asp153His	p.D153H	ENST00000304494	NM_000077.4	153	Gac/Cac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0017893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	55	1092	0	ENST00000304494.5:c.457G>C	p.Asp153His	p.D153H	ENST00000304494	NM_000077.4	153	Gac/Cac																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			609	611	631	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			555	167	589	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	205	538	9	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			765	262	712	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	168	420	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	240	588	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	314	615	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			821	667	807	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486232	8486232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	169	457	0	ENST00000356435.5:c.2585G>A	p.Arg862His	p.R862H	ENST00000356435		862	cGc/cAc																																																																														
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	375	531	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																														
CDK4	0	MSKCC	GRCh37	12	58144446	58144446	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140644696		P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			616	165	382	0	ENST00000257904.6:c.625C>T	p.Arg209Cys	p.R209C	ENST00000257904	NM_000075.3	209	Cgt/Tgt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	207	465	9	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280142	66280142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	89	336	0	ENST00000273854.3:c.1547C>T	p.Thr516Met	p.T516M	ENST00000273854	NM_004439.5	516	aCg/aTg																																																																														
MSH2	0	MSKCC	GRCh37	2	47630407	47630407	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			759	287	686	0	ENST00000233146.2:c.77T>C	p.Met26Thr	p.M26T	ENST00000233146	NM_000251.2	26	aTg/aCg																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915939	127915939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	264	622	2	ENST00000373547.4:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000373547	NM_002721.4	181	cGg/cAg																																																																														
GATA3	0	MSKCC	GRCh37	10	8100462	8100462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			734	286	750	2	ENST00000346208.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000346208		146	Gcc/Acc																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	228	548	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
CHEK2	0	MSKCC	GRCh37	22	29130427	29130427	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			702	254	760	0	ENST00000328354.6:c.283C>T	p.Arg95Ter	p.R95*	ENST00000328354	NM_007194.3	95	Cga/Tga																																																																														
ABL1	0	MSKCC	GRCh37	9	133759752	133759752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	212	594	1	ENST00000318560.5:c.2075C>T	p.Thr692Met	p.T692M	ENST00000318560	NM_005157.4	692	aCg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112176021	112176021	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	306	381	0	ENST00000257430.4:c.4731delA	p.Glu1577AspfsTer73	p.E1577Dfs*73	ENST00000257430	NM_000038.5	1577	gAa/ga																																																																														
STK19	0	MSKCC	GRCh37	6	31948523	31948523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			82	15	119	0	ENST00000375331.2:c.994C>T	p.Arg332Trp	p.R332W	ENST00000375331	NM_004197.1	332	Cgg/Tgg																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88676912	88676912	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	197	522	0	ENST00000372037.3:c.697C>T	p.Gln233Ter	p.Q233*	ENST00000372037	NM_004329.2	233	Cag/Tag																																																																														
SUFU	0	MSKCC	GRCh37	10	104359295	104359295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			573	179	591	0	ENST00000369902.3:c.1016G>A	p.Arg339Gln	p.R339Q	ENST00000369902	NM_016169.3	339	cGg/cAg																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66777380	66777380	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			445	511	680	0	ENST00000307102.5:c.746T>C	p.Met249Thr	p.M249T	ENST00000307102	NM_002755.3	249	aTg/aCg																																																																														
AXIN1	0	MSKCC	GRCh37	16	360011	360011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			819	297	771	1	ENST00000262320.3:c.1078G>A	p.Val360Met	p.V360M	ENST00000262320	NM_003502.3	360	Gtg/Atg																																																																														
TSC2	0	MSKCC	GRCh37	16	2106646	2106646	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			674	248	613	0	ENST00000219476.3:c.650T>C	p.Val217Ala	p.V217A	ENST00000219476	NM_000548.3	217	gTc/gCc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862845	9862845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			697	289	742	1	ENST00000330684.3:c.2458G>A	p.Val820Ile	p.V820I	ENST00000330684	NM_001134407.1	820	Gta/Ata																																																																														
CYLD	0	MSKCC	GRCh37	16	50828193	50828193	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	171	597	0	ENST00000398568.2:c.2531G>A	p.Trp844Ter	p.W844*	ENST00000398568	NM_001042412.1	844	tGg/tAg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349003	89349003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	304	712	0	ENST00000301030.4:c.3947G>A	p.Gly1316Glu	p.G1316E	ENST00000301030	NM_001256183.1	1316	gGg/gAg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349211	89349211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	351	983	2	ENST00000301030.4:c.3739G>A	p.Ala1247Thr	p.A1247T	ENST00000301030	NM_001256183.1	1247	Gct/Act																																																																														
NF1	0	MSKCC	GRCh37	17	29676214	29676214	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	194	557	0	ENST00000358273.4:c.7266A>C	p.Lys2422Asn	p.K2422N	ENST00000358273	NM_001042492.2	2422	aaA/aaC																																																																														
CDK12	0	MSKCC	GRCh37	17	37681121	37681121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	209	582	1	ENST00000447079.4:c.3290G>A	p.Gly1097Glu	p.G1097E	ENST00000447079	NM_015083.1	1097	gGg/gAg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243940	41243940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			734	271	636	0	ENST00000357654.3:c.3608G>A	p.Arg1203Gln	p.R1203Q	ENST00000357654	NM_007294.3	1203	cGa/cAa																																																																														
MSI2	0	MSKCC	GRCh37	17	55752473	55752473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145329279		P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			795	305	762	2	ENST00000284073.2:c.931G>A	p.Gly311Ser	p.G311S	ENST00000284073	NM_138962.2	311	Ggc/Agc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604668	48604668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	163	432	0	ENST00000342988.3:c.1490G>A	p.Arg497His	p.R497H	ENST00000342988	NM_005359.5	497	cGc/cAc																																																																														
INSR	0	MSKCC	GRCh37	19	7120676	7120676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			809	319	740	2	ENST00000302850.5:c.3614C>T	p.Pro1205Leu	p.P1205L	ENST00000302850	NM_000208.2	1205	cCg/cTg																																																																														
BRD4	0	MSKCC	GRCh37	19	15383645	15383645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	176	467	0	ENST00000263377.2:c.266C>T	p.Ala89Val	p.A89V	ENST00000263377	NM_058243.2	89	gCc/gTc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18266904	18266904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	184	441	1	ENST00000222254.8:c.215G>T	p.Gly72Val	p.G72V	ENST00000222254	NM_005027.3	72	gGc/gTc																																																																														
UPF1	0	MSKCC	GRCh37	19	18965458	18965458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			578	214	564	0	ENST00000262803.5:c.1205C>A	p.Pro402His	p.P402H	ENST00000262803	NM_002911.3	402	cCt/cAt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211138	36211138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			944	361	950	2	ENST00000222270.7:c.889C>T	p.Arg297Ter	p.R297*	ENST00000222270	NM_014727.1	297	Cga/Tga																																																																														
SRC	0	MSKCC	GRCh37	20	36014498	36014498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			651	519	665	2	ENST00000358208.4:c.271G>A	p.Ala91Thr	p.A91T	ENST00000358208		91	Gcc/Acc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164799	36164799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			811	312	772	2	ENST00000300305.3:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000300305		359	cCg/cTg																																																																														
ERG	0	MSKCC	GRCh37	21	39817529	39817529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	205	633	0	ENST00000288319.7:c.34G>A	p.Val12Met	p.V12M	ENST00000288319	NM_182918.3	12	Gtg/Atg																																																																														
U2AF1	0	MSKCC	GRCh37	21	44520605	44520605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	174	462	0	ENST00000291552.4:c.157C>T	p.Arg53Cys	p.R53C	ENST00000291552	NM_006758.2	53	Cgt/Tgt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873058	134873058	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			782	266	754	1	ENST00000398015.3:c.1362G>A	p.Trp454Ter	p.W454*	ENST00000398015	NM_004441.4	454	tgG/tgA																																																																														
TET2	0	MSKCC	GRCh37	4	106193793	106193793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	154	393	0	ENST00000380013.4:c.4255C>T	p.Pro1419Ser	p.P1419S	ENST00000380013	NM_001127208.2	1419	Cct/Tct																																																																														
TERT	0	MSKCC	GRCh37	5	1272314	1272314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	986	677	1	ENST00000310581.5:c.2368G>A	p.Val790Ile	p.V790I	ENST00000310581	NM_198253.2	790	Gtc/Atc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38148047	38148047	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			782	305	733	1	ENST00000317025.8:c.3064G>T	p.Gly1022Ter	p.G1022*	ENST00000317025	NM_023034.1	1022	Gga/Tga																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741466	145741466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			917	322	909	1	ENST00000428558.2:c.1037C>T	p.Ala346Val	p.A346V	ENST00000428558	NM_004260.3	346	gCc/gTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139397681	139397681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			734	236	740	0	ENST00000277541.6:c.5120C>T	p.Ala1707Val	p.A1707V	ENST00000277541	NM_017617.3	1707	gCc/gTc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53227954	53227954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			864	272	735	0	ENST00000375401.3:c.2360G>A	p.Arg787Gln	p.R787Q	ENST00000375401	NM_004187.3	787	cGg/cAg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53247133	53247133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	161	446	0	ENST00000375401.3:c.367G>T	p.Gly123Cys	p.G123C	ENST00000375401	NM_004187.3	123	Ggt/Tgt																																																																														
AMER1	0	MSKCC	GRCh37	X	63411231	63411231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			706	246	723	0	ENST00000330258.3:c.1936C>T	p.Arg646Trp	p.R646W	ENST00000330258	NM_152424.3	646	Cgg/Tgg																																																																														
AR	0	MSKCC	GRCh37	X	66765746	66765746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			947	338	930	1	ENST00000374690.3:c.758C>T	p.Ala253Val	p.A253V	ENST00000374690	NM_000044.3	253	gCg/gTg																																																																														
MED12	0	MSKCC	GRCh37	X	70339711	70339711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			777	270	789	0	ENST00000374080.3:c.380C>T	p.Thr127Met	p.T127M	ENST00000374080		127	aCg/aTg																																																																														
MED12	0	MSKCC	GRCh37	X	70347196	70347196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	214	595	0	ENST00000374080.3:c.2860G>A	p.Val954Ile	p.V954I	ENST00000374080		954	Gtc/Atc																																																																														
RARA	0	MSKCC	GRCh37	17	38508752	38508754	+	missense_variant	Missense_Mutation	ONP	ACA	ACA	TCT			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	175	532	0	ENST00000254066.5:c.800_802delACAinsTCT	p.AspIle267ValPhe	p.DI267VF	ENST00000254066	NM_000964.3	267	gACAtc/gTCTtc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856254	111856254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			127	67	98	0	ENST00000341259.2:c.305C>T	p.Ala102Val	p.A102V	ENST00000341259	NM_005475.2	102	gCg/gTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16199534	16199534	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	188	501	0	ENST00000375759.3:c.307G>T	p.Glu103Ter	p.E103*	ENST00000375759	NM_015001.2	103	Gag/Tag																																																																														
RRAGC	0	MSKCC	GRCh37	1	39311694	39311694	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			928	326	826	0	ENST00000373001.3:c.965A>G	p.Asn322Ser	p.N322S	ENST00000373001	NM_022157.3	322	aAt/aGt																																																																														
GATA3	0	MSKCC	GRCh37	10	8100519	8100519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			986	64	721	1	ENST00000346208.3:c.493C>A	p.Pro165Thr	p.P165T	ENST00000346208		165	Cca/Aca																																																																														
CCND1	0	MSKCC	GRCh37	11	69457950	69457950	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	269	615	2	ENST00000227507.2:c.350T>C	p.Ile117Thr	p.I117T	ENST00000227507	NM_053056.2	117	aTc/aCc																																																																														
YAP1	0	MSKCC	GRCh37	11	101981797	101981797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			778	242	665	0	ENST00000282441.5:c.218T>C	p.Met73Thr	p.M73T	ENST00000282441	NM_001130145.2	73	aTg/aCg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420931	49420931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			702	448	620	0	ENST00000301067.7:c.14818C>T	p.Pro4940Ser	p.P4940S	ENST00000301067	NM_003482.3	4940	Ccc/Tcc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435114	49435114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	523	612	0	ENST00000301067.7:c.6439G>A	p.Ala2147Thr	p.A2147T	ENST00000301067	NM_003482.3	2147	Gcg/Acg																																																																														
B2M	567	MSKCC	GRCh37	15	45007896	45007897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	200	418	0	ENST00000558401.1:c.346+1dup		p.W115fs	ENST00000558401	NM_004048.2	115	tgg/tGgg																																																																														
STAT5B	0	MSKCC	GRCh37	17	40384054	40384054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			644	236	580	0	ENST00000293328.3:c.92G>A	p.Arg31Gln	p.R31Q	ENST00000293328	NM_012448.3	31	cGg/cAg																																																																														
ACVR1	0	MSKCC	GRCh37	2	158636932	158636932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			563	204	517	0	ENST00000263640.3:c.248C>T	p.Thr83Ile	p.T83I	ENST00000263640	NM_001105.4	83	aCc/aTc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264298	46264298	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	158	430	0	ENST00000371998.3:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000371998		449	Caa/Taa																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114721	73114721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	160	405	0	ENST00000356692.5:c.1102G>T	p.Gly368Cys	p.G368C	ENST00000356692		368	Ggc/Tgc																																																																														
KDR	0	MSKCC	GRCh37	4	55981196	55981196	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	153	502	0	ENST00000263923.4:c.503A>C	p.Lys168Thr	p.K168T	ENST00000263923	NM_002253.2	168	aAg/aCg																																																																														
STAG2	0	MSKCC	GRCh37	X	123224769	123224769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017986-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			728	249	798	1	ENST00000218089.9:c.3533C>T	p.Ala1178Val	p.A1178V	ENST00000218089	NM_001042749.1	1178	gCa/gTa																																																																														
GATA3	0	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018046-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			757	290	674	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0018052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	189	335	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
GATA3	0	MSKCC	GRCh37	10	8115719	8115720	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0018052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	245	372	0	ENST00000346208.3:c.1066_1067delAT	p.Met356GlufsTer14	p.M356Efs*14	ENST00000346208		355	acTAtg/actg																																																																														
CBFB	0	MSKCC	GRCh37	16	67070644	67070645	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	150	227	0	ENST00000412916.2:c.268_269insT	p.Arg90MetfsTer26	p.R90Mfs*26	ENST00000412916		90	aga/aTga																																																																														
LATS2	0	MSKCC	GRCh37	13	21549413	21549413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018287-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	268	409	2	ENST00000382592.4:c.2863G>A	p.Ala955Thr	p.A955T	ENST00000382592	NM_014572.2	955	Gca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	45	566	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	45	479	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
RBM10	0	MSKCC	GRCh37	X	47039638	47039638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	55	538	0	ENST00000329236.7:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000329236	NM_001204466.1	286	Cag/Tag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	66	410	0	ENST00000304494.5:c.243dup	p.Val82ArgfsTer38	p.V82Rfs*38	ENST00000304494	NM_000077.4	81	-/C																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	66	410	0	ENST00000304494.5:c.243dup	p.Val82ArgfsTer38	p.V82Rfs*38	ENST00000304494	NM_000077.4	81	-/C																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971114	21971115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	66	410	0	ENST00000304494.5:c.243dup	p.Val82ArgfsTer38	p.V82Rfs*38	ENST00000304494	NM_000077.4	81	-/C																																																																														
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0018583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			703	438	640	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019179-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			491	122	960	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0019179-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			515	80	777	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
DNMT3A	0	MSKCC	GRCh37	2	25469995	25470003	+	inframe_deletion	In_Frame_Del	DEL	CGAGCTCAG	CGAGCTCAG	-			P-0019179-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			540	181	957	0	ENST00000264709.3:c.1039_1047del	p.Leu347_Ser349del	p.L347_S349del	ENST00000264709	NM_175629.2	347	CTGAGCTCG/-																																																																														
RUNX1	0	MSKCC	GRCh37	21	36231782	36231783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019179-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			910	239	1223	0	ENST00000300305.3:c.601dup	p.Arg201ProfsTer12	p.R201Pfs*12	ENST00000300305		201	cga/cCga																																																																														
EZH2	0	MSKCC	GRCh37	7	148508814	148508814	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0019179-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			413	209	578	0	ENST00000320356.2:c.1852-2A>G		p.X618_splice	ENST00000320356	NM_004456.4	618																																																																															
RB1	0	MSKCC	GRCh37	13	49039236	49039236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019246-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			441	232	588	1	ENST00000267163.4:c.2314G>A	p.Ala772Thr	p.A772T	ENST00000267163	NM_000321.2	772	Gct/Act																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610306	10610306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019246-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			535	327	964	1	ENST00000171111.5:c.404G>A	p.Arg135His	p.R135H	ENST00000171111	NM_203500.1	135	cGc/cAc																																																																														
BAP1	0	MSKCC	GRCh37	3	52442545	52442545	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019246-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			192	218	734	0	ENST00000460680.1:c.200del	p.Asp67ValfsTer5	p.D67Vfs*5	ENST00000460680	NM_004656.3	67	gAt/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0019488-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	103	470	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061227	38061227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019488-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	117	470	0	ENST00000250448.2:c.762C>G	p.Phe254Leu	p.F254L	ENST00000250448	NM_004496.3	254	ttC/ttG																																																																														
GATA3	0	MSKCC	GRCh37	10	8115710	8115711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019488-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	105	474	0	ENST00000346208.3:c.1060dupC	p.Leu354ProfsTer17	p.L354Pfs*17	ENST00000346208		352	-/C																																																																														
CBFB	0	MSKCC	GRCh37	16	67063389	67063389	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019488-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	122	403	0	ENST00000412916.2:c.78+1G>A		p.X26_splice	ENST00000412916		26																																																																															
GATA1	0	MSKCC	GRCh37	X	48650368	48650368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019488-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			835	53	637	1	ENST00000376670.3:c.338G>A	p.Arg113His	p.R113H	ENST00000376670	NM_002049.3	113	cGc/cAc																																																																														
NRAS	0	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	197	708	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
FLT3	0	MSKCC	GRCh37	13	28626694	28626694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	84	598	0	ENST00000241453.7:c.602C>T	p.Ser201Leu	p.S201L	ENST00000241453	NM_004119.2	201	tCa/tTa																																																																														
NF1	0	MSKCC	GRCh37	17	29652870	29652870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	60	303	0	ENST00000358273.4:c.4868T>G	p.Leu1623Arg	p.L1623R	ENST00000358273	NM_001042492.2	1623	cTg/cGg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021577	31021581	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTT	TCCTT	-			P-0019543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	137	610	0	ENST00000375687.4:c.1577_1581del	p.Ser526Ter	p.S526*	ENST00000375687	NM_015338.5	526	TCCTTt/t																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591083	67591084	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGACAAACGTATGAACAGCATTAAACCAGACCTTATCCA			P-0019543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	36	475	0	ENST00000274335.5:c.1677_1715dup	p.Ile571_Gln572insHisAspLysArgMetAsnSerIleLysProAspLeuIle	p.I571_Q572insHDKRMNSIKPDLI	ENST00000274335		559	att/atTGACAAACGTATGAACAGCATTAAACCAGACCTTATCCAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	33	775	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	68	1317	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	42	746	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	42	746	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	42	746	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	28	663	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	28	663	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	28	663	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	55	814	0	ENST00000269305.4:c.584T>G	p.Ile195Ser	p.I195S	ENST00000269305	NM_001126112.2	195	aTc/aGc																																																																														
ATM	0	MSKCC	GRCh37	11	108206595	108206595	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	27	525	0	ENST00000278616.4:c.8175T>A	p.Asp2725Glu	p.D2725E	ENST00000278616	NM_000051.3	2725	gaT/gaA																																																																														
KRAS	0	MSKCC	GRCh37	12	25380269	25380270	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCCTCTTGACCTGCTGTGTCG			P-0019736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	35	688	0	ENST00000256078.4:c.168_188dup	p.Glu62_Glu63insAspAspThrAlaGlyGlnGlu	p.E62_E63insDDTAGQE	ENST00000256078	NM_033360.2	63	gag/gaCGACACAGCAGGTCAAGAGGAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420660	49420660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	30	647	2	ENST00000301067.7:c.15089G>A	p.Arg5030His	p.R5030H	ENST00000301067	NM_003482.3	5030	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020038-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			819	153	754	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213912	36213912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020038-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			985	130	754	1	ENST00000222270.7:c.2738C>T	p.Ser913Phe	p.S913F	ENST00000222270	NM_014727.1	913	tCc/tTc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115701	8115704	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GATT	GATT	-			P-0020091-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	72	244	0	ENST00000346208.3:c.1048-1_1050delGATT		p.X350_splice	ENST00000346208		350																																																																															
RUNX1	0	MSKCC	GRCh37	21	36171657	36171657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020091-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	114	309	1	ENST00000300305.3:c.908C>A	p.Ser303Ter	p.S303*	ENST00000300305		303	tCa/tAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	20	991	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	75	719	2	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	75	719	2	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	38	828	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
ERCC4	0	MSKCC	GRCh37	16	14015940	14015940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	36	679	3	ENST00000311895.7:c.260G>T	p.Arg87Leu	p.R87L	ENST00000311895	NM_005236.2	87	cGt/cTt																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186504915	186504915	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	44	517	0	ENST00000323963.5:c.772del		p.X258_splice	ENST00000323963		258																																																																															
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971006	21971006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	60	811	0	ENST00000304494.5:c.352G>C	p.Ala118Pro	p.A118P	ENST00000304494	NM_000077.4	118	Gct/Cct																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971006	21971006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	60	811	0	ENST00000304494.5:c.352G>C	p.Ala118Pro	p.A118P	ENST00000304494	NM_000077.4	118	Gct/Cct																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0020513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	280	774	2	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																														
TET2	0	MSKCC	GRCh37	4	106155548	106155549	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	90	457	0	ENST00000380013.4:c.450dup	p.Val151CysfsTer11	p.V151Cfs*11	ENST00000380013	NM_001127208.2	150	tct/tcTt																																																																														
MDC1	0	MSKCC	GRCh37	6	30675414	30675414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	37	501	0	ENST00000376406.3:c.2942C>T	p.Ser981Leu	p.S981L	ENST00000376406	NM_014641.2	981	tCa/tTa																																																																														
RBM10	8241	MSKCC	GRCh37	X	47040962	47040963	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0020513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	40	644	0	ENST00000329236.7:c.1261_1262del	p.Ala421ProfsTer18	p.A421Pfs*18	ENST00000329236	NM_001204466.1	420	CGc/c																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111907692	111907693	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0020513-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	63	433	0	ENST00000393256.3:c.466_467delinsTT	p.Gly156Leu	p.G156L	ENST00000393256	NM_006538.4	156	GGa/TTa																																																																														
GATA3	0	MSKCC	GRCh37	10	8111543	8111545	+	inframe_deletion	In_Frame_Del	DEL	CTA	CTA	-			P-0020545-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			481	126	531	0	ENST00000346208.3:c.1033_1035del	p.Tyr345del	p.Y345del	ENST00000346208		343	ctCTAc/ctc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115865	8115866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020545-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			494	125	564	0	ENST00000346208.3:c.1213dup	p.His405ProfsTer102	p.H405Pfs*102	ENST00000346208		404	agc/agCc																																																																														
STAG2	0	MSKCC	GRCh37	X	123176494	123176494	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0020545-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			335	85	376	0	ENST00000218089.9:c.461A>T	p.Glu154Val	p.E154V	ENST00000218089	NM_001042749.1	154	gAg/gTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212285249	212285249	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	372	668	1	ENST00000342788.4:c.3052G>T	p.Asp1018Tyr	p.D1018Y	ENST00000342788	NM_005235.2	1018	Gat/Tat																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602473	10602473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	119	671	0	ENST00000171111.5:c.1105G>T	p.Val369Leu	p.V369L	ENST00000171111	NM_203500.1	369	Gtg/Ttg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81891885	81891885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	87	560	0	ENST00000359376.3:c.355G>T	p.Ala119Ser	p.A119S	ENST00000359376	NM_002661.3	119	Gca/Tca																																																																														
BRCA1	0	MSKCC	GRCh37	17	41219712	41219712	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	81	427	0	ENST00000357654.3:c.4987A>T	p.Met1663Leu	p.M1663L	ENST00000357654	NM_007294.3	1663	Atg/Ttg																																																																														
STK11	0	MSKCC	GRCh37	19	1207181	1207196	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGGGAGGCCAACGT	ACGGGGAGGCCAACGT	-			P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	121	864	0	ENST00000326873.7:c.269_284del	p.Asn90ArgfsTer8	p.N90Rfs*8	ENST00000326873	NM_000455.4	90	aACGGGGAGGCCAACGTg/ag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922307	178922307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	110	532	0	ENST00000263967.3:c.1076G>C	p.Gly359Ala	p.G359A	ENST00000263967	NM_006218.2	359	gGt/gCt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55155046	55155046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	105	490	2	ENST00000257290.5:c.2755G>T	p.Asp919Tyr	p.D919Y	ENST00000257290	NM_006206.4	919	Gac/Tac																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	24	444	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	24	444	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	24	444	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	193	845	1	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	170	837	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
APC	0	MSKCC	GRCh37	5	112175437	112175438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	37	426	0	ENST00000257430.4:c.4147dup	p.Met1383AsnfsTer3	p.M1383Nfs*3	ENST00000257430	NM_000038.5	1382	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7579476	7579484	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCAGCCT	GAGCAGCCT	CCTC			P-0021312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	159	920	0	ENST00000269305.4:c.203_211delinsGAGG	p.Glu68GlyfsTer79	p.E68Gfs*79	ENST00000269305	NM_001126112.2	68	gAGGCTGCTCcc/gGAGGcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	93	924	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	158	1322	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185165686	185165686	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	52	694	0	ENST00000265026.3:c.961G>T	p.Ala321Ser	p.A321S	ENST00000265026	NM_004721.4	321	Gcg/Tcg																																																																														
KMT2C	0	MSKCC	GRCh37	7	152012261	152012261	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	100	806	0	ENST00000262189.6:c.552del	p.Met184IlefsTer22	p.M184Ifs*22	ENST00000262189	NM_170606.2	184	atG/at																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971082	21971089	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCAGGA	GTCCAGGA	-			P-0021379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	83	442	0	ENST00000304494.5:c.269_276del	p.Phe90TyrfsTer27	p.F90Yfs*27	ENST00000304494	NM_000077.4	90	tTCCTGGAC/t																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971082	21971089	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCAGGA	GTCCAGGA	-			P-0021379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	83	442	0	ENST00000304494.5:c.269_276del	p.Phe90TyrfsTer27	p.F90Yfs*27	ENST00000304494	NM_000077.4	90	tTCCTGGAC/t																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971082	21971089	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCAGGA	GTCCAGGA	-			P-0021379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	83	442	0	ENST00000304494.5:c.269_276del	p.Phe90TyrfsTer27	p.F90Yfs*27	ENST00000304494	NM_000077.4	90	tTCCTGGAC/t																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	21	622	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	33	382	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	475	574	1	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20156711	20156711	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	255	718	0	ENST00000379607.5:c.46A>G	p.Lys16Glu	p.K16E	ENST00000379607	NM_001412.3	16	Aag/Gag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432330	49432330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	371	860	0	ENST00000301067.7:c.8809C>G	p.Pro2937Ala	p.P2937A	ENST00000301067	NM_003482.3	2937	Cca/Gca																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487295	56487295	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	221	559	3	ENST00000267101.3:c.1441C>T	p.Arg481Ter	p.R481*	ENST00000267101	NM_001982.3	481	Cga/Tga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	78	379	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	78	379	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	78	379	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
SDHA	0	MSKCC	GRCh37	5	233751	233751	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199844384		P-0021693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	107	660	3	ENST00000264932.6:c.1055G>A	p.Arg352Gln	p.R352Q	ENST00000264932	NM_004168.2	352	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	50	444	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	83	686	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599949	10599950	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	41	796	0	ENST00000171111.5:c.1626_1627delGA	p.Glu542AspfsTer31	p.E542Dfs*31	ENST00000171111	NM_203500.1	542	gaGAcg/gacg																																																																														
TP53	0	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	42	634	0	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																														
ROS1	0	MSKCC	GRCh37	6	117710911	117710911	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	34	508	1	ENST00000368508.3:c.1361C>G	p.Thr454Arg	p.T454R	ENST00000368508	NM_002944.2	454	aCg/aGg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	104	713	0	ENST00000269571.5:c.829G>T	p.Asp277Tyr	p.D277Y	ENST00000269571		277	Gac/Tac																																																																														
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	13	654	3	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																														
TSC2	0	MSKCC	GRCh37	16	2103391	2103391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	19	740	2	ENST00000219476.3:c.274G>A	p.Glu92Lys	p.E92K	ENST00000219476	NM_000548.3	92	Gag/Aag																																																																														
TP63	0	MSKCC	GRCh37	3	189612247	189612247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	30	453	1	ENST00000264731.3:c.1999G>A	p.Ala667Thr	p.A667T	ENST00000264731	NM_003722.4	667	Gct/Act																																																																														
MTOR	0	MSKCC	GRCh37	1	11188940	11188940	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	34	707	0	ENST00000361445.4:c.5783A>G	p.Lys1928Arg	p.K1928R	ENST00000361445	NM_004958.3	1928	aAa/aGa																																																																														
TET1	0	MSKCC	GRCh37	10	70451555	70451555	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	13	668	0	ENST00000373644.4:c.6395A>G	p.Tyr2132Cys	p.Y2132C	ENST00000373644	NM_030625.2	2132	tAt/tGt																																																																														
RECQL	0	MSKCC	GRCh37	12	21626494	21626494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	25	697	0	ENST00000421138.2:c.1438A>T	p.Lys480Ter	p.K480*	ENST00000421138		480	Aaa/Taa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515307	103515307	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	19	427	1	ENST00000355739.4:c.1808T>A	p.Val603Glu	p.V603E	ENST00000355739	NM_000123.3	603	gTg/gAg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30105656	30105656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	13	732	0	ENST00000331968.5:c.1030G>A	p.Gly344Arg	p.G344R	ENST00000331968	NM_002742.2	344	Ggg/Agg																																																																														
NTHL1	0	MSKCC	GRCh37	16	2096184	2096184	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	19	804	0	ENST00000219066.1:c.323C>A	p.Ala108Glu	p.A108E	ENST00000219066	NM_002528.5	108	gCa/gAa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600032	10600032	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	51	705	0	ENST00000171111.5:c.1544T>C	p.Leu515Pro	p.L515P	ENST00000171111	NM_203500.1	515	cTg/cCg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	8	344	1	ENST00000263967.3:c.353G>T	p.Gly118Val	p.G118V	ENST00000263967	NM_006218.2	118	gGt/gTt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526520	31526520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	21	903	0	ENST00000344624.3:c.520C>T	p.His174Tyr	p.H174Y	ENST00000344624		174	Cac/Tac																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222789	53222790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	43	810	0	ENST00000375401.3:c.4146dup	p.Gln1383ThrfsTer11	p.Q1383Tfs*11	ENST00000375401	NM_004187.3	1382	-/A																																																																														
ATRX	0	MSKCC	GRCh37	X	76912060	76912060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	11	624	0	ENST00000373344.5:c.4204C>A	p.Pro1402Thr	p.P1402T	ENST00000373344	NM_000489.3	1402	Ccc/Acc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	62	785	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
STK11	0	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	312	814	1	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																														
PLCG2	0	MSKCC	GRCh37	16	81969845	81969845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	134	594	3	ENST00000359376.3:c.2914G>T	p.Val972Phe	p.V972F	ENST00000359376	NM_002661.3	972	Gtc/Ttc																																																																														
ATM	0	MSKCC	GRCh37	11	108127056	108127056	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	14	495	0	ENST00000278616.4:c.2239C>T	p.Gln747Ter	p.Q747*	ENST00000278616	NM_000051.3	747	Cag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108216543	108216543	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	51	611	0	ENST00000278616.4:c.8492T>C	p.Phe2831Ser	p.F2831S	ENST00000278616	NM_000051.3	2831	tTc/tCc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106522595	106522595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	33	730	0	ENST00000359195.3:c.2572G>A	p.Glu858Lys	p.E858K	ENST00000359195	NM_002649.2	858	Gaa/Aaa																																																																														
BCOR	0	MSKCC	GRCh37	X	39937117	39937117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	150	814	0	ENST00000378444.4:c.66G>T	p.Met22Ile	p.M22I	ENST00000378444	NM_001123385.1	22	atG/atT																																																																														
SPOP	0	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	88	635	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	162	378	0				ENST00000310581	NM_198253.2																																																																																
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	253	854	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
CALR	0	MSKCC	GRCh37	19	13054615	13054615	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs143880510		P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	71	643	2	ENST00000316448.5:c.1142A>C	p.Glu381Ala	p.E381A	ENST00000316448	NM_004343.3	381	gAg/gCg																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665360	138665360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	105	889	0	ENST00000330315.3:c.205G>A	p.Glu69Lys	p.E69K	ENST00000330315	NM_023067.3	69	Gag/Aag																																																																														
WT1	0	MSKCC	GRCh37	11	32421575	32421575	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	82	898	0	ENST00000332351.3:c.1017C>A	p.Tyr339Ter	p.Y339*	ENST00000332351	NM_024426.4	339	taC/taA																																																																														
NF1	0	MSKCC	GRCh37	17	29559787	29559787	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	148	585	0	ENST00000358273.4:c.3384del	p.Gly1129AlafsTer13	p.G1129Afs*13	ENST00000358273	NM_001042492.2	1128	ggT/gg																																																																														
NF1	0	MSKCC	GRCh37	17	29663932	29663932	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	62	395	0	ENST00000358273.4:c.6427G>T	p.Glu2143Ter	p.E2143*	ENST00000358273	NM_001042492.2	2143	Gaa/Taa																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965575	25965575	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	232	912	0	ENST00000435504.4:c.3631A>T	p.Ser1211Cys	p.S1211C	ENST00000435504		1211	Agt/Tgt																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186504965	186504965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	79	566	0	ENST00000323963.5:c.821C>A	p.Thr274Lys	p.T274K	ENST00000323963		274	aCa/aAa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127447	55127447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	98	938	0	ENST00000257290.5:c.235G>T	p.Gly79Cys	p.G79C	ENST00000257290	NM_006206.4	79	Ggc/Tgc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143081516	143081516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	69	568	0	ENST00000262992.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000262992	NM_001101669.1	520	Gag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112178876	112178877	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	67	559	1	ENST00000257430.4:c.7585_7586delinsTT	p.Ala2529Leu	p.A2529L	ENST00000257430	NM_000038.5	2529	GCa/TTa																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271555	26271555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	37	525	0	ENST00000305910.3:c.58C>T	p.Gln20Ter	p.Q20*	ENST00000305910	NM_003534.2	20	Cag/Tag																																																																														
MDC1	0	MSKCC	GRCh37	6	30675520	30675520	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	130	1051	2	ENST00000376406.3:c.2836A>T	p.Thr946Ser	p.T946S	ENST00000376406	NM_014641.2	946	Aca/Tca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022069-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			361	316	424	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022069-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			713	130	622	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022100-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			191	229	418	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41277892	41277892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022100-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			118	267	279	0	ENST00000349496.5:c.1856G>A	p.Cys619Tyr	p.C619Y	ENST00000349496	NM_001904.3	619	tGt/tAt																																																																														
SESN2	0	MSKCC	GRCh37	1	28601391	28601391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022100-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			653	45	389	1	ENST00000253063.3:c.1076G>T	p.Gly359Val	p.G359V	ENST00000253063	NM_031459.4	359	gGt/gTt																																																																														
SESN2	0	MSKCC	GRCh37	1	28605731	28605731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022100-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			468	173	446	0	ENST00000253063.3:c.1335G>T	p.Arg445Ser	p.R445S	ENST00000253063	NM_031459.4	445	agG/agT																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9916160	9916160	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022100-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			488	34	363	0	ENST00000330684.3:c.2129A>G	p.Gln710Arg	p.Q710R	ENST00000330684	NM_001134407.1	710	cAg/cGg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52678783	52678783	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022100-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			129	218	256	0	ENST00000394830.3:c.836del	p.Ile279AsnfsTer4	p.I279Nfs*4	ENST00000394830	NM_018313.4	279	aTa/aa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151880191	151880191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022100-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			379	354	367	0	ENST00000262189.6:c.5133G>A	p.Met1711Ile	p.M1711I	ENST00000262189	NM_170606.2	1711	atG/atA																																																																														
SUZ12	0	MSKCC	GRCh37	17	30303600	30303600	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022149-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			33	14	10	0	ENST00000322652.5:c.884T>C	p.Phe295Ser	p.F295S	ENST00000322652	NM_015355.2	295	tTt/tCt																																																																														
RIT1	0	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	139	621	0	ENST00000368323.3:c.270G>T	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atT																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665029	138665029	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs7432551		P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	30	264	0	ENST00000330315.3:c.536C>G	p.Ala179Gly	p.A179G	ENST00000330315	NM_023067.3	179	gCg/gGg																																																																														
APC	0	MSKCC	GRCh37	5	112174840	112174840	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	64	443	0	ENST00000257430.4:c.3549T>A	p.Tyr1183Ter	p.Y1183*	ENST00000257430	NM_000038.5	1183	taT/taA																																																																														
EGFR	0	MSKCC	GRCh37	7	55220295	55220295	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	600	1019	0	ENST00000275493.2:c.685A>T	p.Ser229Cys	p.S229C	ENST00000275493	NM_005228.3	229	Agt/Tgt																																																																														
NF1	0	MSKCC	GRCh37	17	29556992	29556992	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	32	230	0	ENST00000358273.4:c.2990G>T	p.Arg997Met	p.R997M	ENST00000358273	NM_001042492.2	997	aGg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579389	7579389	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	371	1068	2	ENST00000269305.4:c.298del	p.Gln100ArgfsTer23	p.Q100Rfs*23	ENST00000269305	NM_001126112.2	100	Cag/ag																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2494641	2494641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1260	244	943	1	ENST00000355716.4:c.781C>A	p.Pro261Thr	p.P261T	ENST00000355716	NM_003820.2	261	Cct/Act																																																																														
SMYD3	0	MSKCC	GRCh37	1	246021850	246021850	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145115256		P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	188	994	1	ENST00000388985.4:c.1024G>A	p.Gly342Ser	p.G342S	ENST00000388985		342	Ggc/Agc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18747483	18747483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	248	700	0	ENST00000266497.5:c.3944A>G	p.Glu1315Gly	p.E1315G	ENST00000266497		1315	gAa/gGa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425819	49425819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	373	804	0	ENST00000301067.7:c.12669G>T	p.Gln4223His	p.Q4223H	ENST00000301067	NM_003482.3	4223	caG/caT																																																																														
FLT1	0	MSKCC	GRCh37	13	28886131	28886131	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	188	798	2	ENST00000282397.4:c.3491A>G	p.Gln1164Arg	p.Q1164R	ENST00000282397	NM_002019.4	1164	cAg/cGg																																																																														
SLX4	0	MSKCC	GRCh37	16	3646259	3646259	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	226	1145	0	ENST00000294008.3:c.1819A>T	p.Arg607Trp	p.R607W	ENST00000294008	NM_032444.2	607	Agg/Tgg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351902	89351902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	219	1293	0	ENST00000301030.4:c.1048G>C	p.Asp350His	p.D350H	ENST00000301030	NM_001256183.1	350	Gat/Cat																																																																														
NF1	0	MSKCC	GRCh37	17	29563039	29563039	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	163	508	0	ENST00000358273.4:c.3974G>T	p.Arg1325Met	p.R1325M	ENST00000358273	NM_001042492.2	1325	aGg/aTg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46268479	46268479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	264	573	0	ENST00000371998.3:c.2866G>T	p.Gly956Cys	p.G956C	ENST00000371998		956	Ggc/Tgc																																																																														
LATS1	0	MSKCC	GRCh37	6	150016342	150016342	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	249	765	0	ENST00000253339.5:c.364del	p.Ala122LeufsTer10	p.A122Lfs*10	ENST00000253339		122	Gct/ct																																																																														
IKZF1	0	MSKCC	GRCh37	7	50455070	50455070	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	360	573	0	ENST00000331340.3:c.617G>C	p.Cys206Ser	p.C206S	ENST00000331340	NM_006060.4	206	tGt/tCt																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	310	785	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485807	8485807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	55	391	1	ENST00000356435.5:c.3010C>A	p.Pro1004Thr	p.P1004T	ENST00000356435		1004	Cca/Aca																																																																														
MTOR	0	MSKCC	GRCh37	1	11264642	11264642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	100	621	0	ENST00000361445.4:c.3920C>G	p.Ala1307Gly	p.A1307G	ENST00000361445	NM_004958.3	1307	gCa/gGa																																																																														
WT1	0	MSKCC	GRCh37	11	32456356	32456356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	121	751	0	ENST00000332351.3:c.536C>T	p.Pro179Leu	p.P179L	ENST00000332351	NM_024426.4	179	cCc/cTc																																																																														
FLT1	0	MSKCC	GRCh37	13	29012412	29012412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	149	708	0	ENST00000282397.4:c.459G>T	p.Glu153Asp	p.E153D	ENST00000282397	NM_002019.4	153	gaG/gaT																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778522	3778522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	347	934	1	ENST00000262367.5:c.6526C>T	p.Pro2176Ser	p.P2176S	ENST00000262367	NM_004380.2	2176	Cca/Tca																																																																														
NF1	0	MSKCC	GRCh37	17	29585516	29585516	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	24	151	0	ENST00000358273.4:c.4328C>G	p.Ser1443Ter	p.S1443*	ENST00000358273	NM_001042492.2	1443	tCa/tGa																																																																														
ATR	0	MSKCC	GRCh37	3	142281319	142281319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	87	718	0	ENST00000350721.4:c.925G>A	p.Ala309Thr	p.A309T	ENST00000350721	NM_001184.3	309	Gct/Act																																																																														
EPHA5	0	MSKCC	GRCh37	4	66231686	66231686	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	20	658	0	ENST00000273854.3:c.2014G>T	p.Ala672Ser	p.A672S	ENST00000273854	NM_004439.5	672	Gca/Tca																																																																														
SDHA	0	MSKCC	GRCh37	5	235377	235377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	431	654	0	ENST00000264932.6:c.1183G>T	p.Val395Phe	p.V395F	ENST00000264932	NM_004168.2	395	Gtc/Ttc																																																																														
CCND3	0	MSKCC	GRCh37	6	41908251	41908251	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	290	821	0	ENST00000372991.4:c.271T>A	p.Cys91Ser	p.C91S	ENST00000372991	NM_001760.3	91	Tgc/Agc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	190	280	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	308	307	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
EGFL7	0	MSKCC	GRCh37	9	139564734	139564735	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0022530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	41	426	0	ENST00000308874.7:c.525_526delCT	p.Val177AlafsTer106	p.V177Afs*106	ENST00000308874		175	CTc/c																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	350	371	0	ENST00000267101.3:c.850G>C	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Cga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501194		P-0022530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	72	312	0	ENST00000269305.4:c.790del	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	264	Cta/ta																																																																														
KDR	0	MSKCC	GRCh37	4	55948172	55948172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	22	327	0	ENST00000263923.4:c.3799G>A	p.Glu1267Lys	p.E1267K	ENST00000263923	NM_002253.2	1267	Gaa/Aaa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38135877	38135877	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			527	65	342	0	ENST00000317025.8:c.3814G>C	p.Glu1272Gln	p.E1272Q	ENST00000317025	NM_023034.1	1272	Gag/Cag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44950030	44950031	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	64	390	0	ENST00000377967.4:c.3800dup	p.Val1268SerfsTer23	p.V1268Sfs*23	ENST00000377967	NM_021140.2	1267	ata/aTta																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9787016	9787016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	37	352	1	ENST00000377346.4:c.3047G>A	p.Arg1016Gln	p.R1016Q	ENST00000377346	NM_005026.3	1016	cGa/cAa																																																																														
KDM5A	0	MSKCC	GRCh37	12	417117	417117	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022530-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	28	233	0	ENST00000399788.2:c.3433A>T	p.Arg1145Ter	p.R1145*	ENST00000399788	NM_001042603.1	1145	Aga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	170	854	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
DDR2	0	MSKCC	GRCh37	1	162729626	162729626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	54	691	0	ENST00000367921.3:c.712G>T	p.Gly238Cys	p.G238C	ENST00000367921	NM_006182.2	238	Ggc/Tgc																																																																														
ETV6	0	MSKCC	GRCh37	12	12022747	12022747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	39	657	0	ENST00000396373.4:c.853G>T	p.Val285Leu	p.V285L	ENST00000396373	NM_001987.4	285	Gtg/Ttg																																																																														
CD276	0	MSKCC	GRCh37	15	73995383	73995383	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	77	591	0	ENST00000318443.5:c.689A>T	p.Asp230Val	p.D230V	ENST00000318443	NM_001024736.1	230	gAt/gTt																																																																														
CYLD	0	MSKCC	GRCh37	16	50813729	50813729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	136	905	0	ENST00000398568.2:c.1283G>T	p.Gly428Val	p.G428V	ENST00000398568	NM_001042412.1	428	gGa/gTa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123688	11123688	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	150	895	0	ENST00000344626.4:c.2338G>T	p.Glu780Ter	p.E780*	ENST00000344626	NM_003072.3	780	Gag/Tag																																																																														
CIC	0	MSKCC	GRCh37	19	42795045	42795045	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	351	1087	0	ENST00000575354.2:c.2125A>T	p.Thr709Ser	p.T709S	ENST00000575354	NM_015125.3	709	Act/Tct																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730817	40730817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	82	963	0	ENST00000373198.4:c.3718C>G	p.Leu1240Val	p.L1240V	ENST00000373198	NM_133170.3	1240	Ctt/Gtt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40748612	40748612	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	48	514	0	ENST00000373198.4:c.2905-1G>T		p.X969_splice	ENST00000373198	NM_133170.3	969																																																																															
SETD2	0	MSKCC	GRCh37	3	47058615	47058615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	182	796	0	ENST00000409792.3:c.7663T>C	p.Tyr2555His	p.Y2555H	ENST00000409792	NM_014159.6	2555	Tac/Cac																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55136903	55136903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	52	625	0	ENST00000257290.5:c.1225C>A	p.Leu409Met	p.L409M	ENST00000257290	NM_006206.4	409	Ctg/Atg																																																																														
KDR	0	MSKCC	GRCh37	4	55976735	55976735	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	50	624	1	ENST00000263923.4:c.1092-2A>T		p.X364_splice	ENST00000263923	NM_002253.2	364																																																																															
NSD1	0	MSKCC	GRCh37	5	176715876	176715876	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	61	837	0	ENST00000439151.2:c.6208T>C	p.Cys2070Arg	p.C2070R	ENST00000439151	NM_022455.4	2070	Tgc/Cgc																																																																														
ROS1	0	MSKCC	GRCh37	6	117631369	117631369	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	69	645	0	ENST00000368508.3:c.6309T>A	p.Phe2103Leu	p.F2103L	ENST00000368508	NM_002944.2	2103	ttT/ttA																																																																														
LATS1	0	MSKCC	GRCh37	6	150001244	150001244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	57	751	0	ENST00000253339.5:c.2360G>T	p.Gly787Val	p.G787V	ENST00000253339		787	gGg/gTg																																																																														
PARK2	0	MSKCC	GRCh37	6	161771151	161771151	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	127	805	2	ENST00000366898.1:c.1378del	p.Asp460ThrfsTer181	p.D460Tfs*181	ENST00000366898	NM_004562.2	460	Gac/ac																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467722	50467722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	253	777	0	ENST00000331340.3:c.957C>G	p.Ile319Met	p.I319M	ENST00000331340	NM_006060.4	319	atC/atG																																																																														
MET	0	MSKCC	GRCh37	7	116436018	116436018	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	61	883	0	ENST00000397752.3:c.4013C>G	p.Ser1338Ter	p.S1338*	ENST00000397752	NM_000245.2	1338	tCa/tGa																																																																														
ARAF	0	MSKCC	GRCh37	X	47424239	47424239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	131	886	1	ENST00000377045.4:c.244G>T	p.Asp82Tyr	p.D82Y	ENST00000377045	NM_001654.4	82	Gat/Tat																																																																														
ATRX	0	MSKCC	GRCh37	X	76937617	76937617	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	39	568	0	ENST00000373344.5:c.3131A>G	p.Lys1044Arg	p.K1044R	ENST00000373344	NM_000489.3	1044	aAg/aGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	46	709	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	47	712	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	36	615	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	36	615	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	36	615	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	23	465	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906451	32906451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	46	569	0	ENST00000380152.3:c.836G>T	p.Cys279Phe	p.C279F	ENST00000380152		279	tGc/tTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141546	11141546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	196	953	0	ENST00000344626.4:c.3523G>A	p.Asp1175Asn	p.D1175N	ENST00000344626	NM_003072.3	1175	Gac/Aac																																																																														
CASP8	0	MSKCC	GRCh37	2	202151270	202151270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	191	900	1	ENST00000358485.4:c.1570C>T	p.Gln524Ter	p.Q524*	ENST00000358485	NM_001080125.1	524	Cag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1220394	1220394	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	249	1011	0	ENST00000326873.7:c.487G>C	p.Gly163Arg	p.G163R	ENST00000326873	NM_000455.4	163	Ggc/Cgc																																																																														
RAD51C	0	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	180	778	2	ENST00000337432.4:c.61C>T	p.Pro21Ser	p.P21S	ENST00000337432	NM_058216.2	21	Cca/Tca																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	125	682	13	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																																																														
ERBB2	0	MSKCC	GRCh37	17	37876038	37876038	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	217	1064	0	ENST00000269571.5:c.1899-2A>G		p.X633_splice	ENST00000269571		633																																																																															
KEAP1	0	MSKCC	GRCh37	19	10602939	10602939	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	239	1068	0	ENST00000171111.5:c.640-1G>T		p.X214_splice	ENST00000171111	NM_203500.1	214																																																																															
RB1	0	MSKCC	GRCh37	13	48947596	48947596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	110	756	0	ENST00000267163.4:c.1183C>G	p.Gln395Glu	p.Q395E	ENST00000267163	NM_000321.2	395	Caa/Gaa																																																																														
NF1	0	MSKCC	GRCh37	17	29654796	29654796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	147	581	0	ENST00000358273.4:c.5548G>A	p.Val1850Ile	p.V1850I	ENST00000358273	NM_001042492.2	1850	Gtc/Atc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2211749	2211749	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	219	1142	0	ENST00000398665.3:c.1466-1G>A		p.X489_splice	ENST00000398665	NM_032482.2	489																																																																															
CIC	0	MSKCC	GRCh37	19	42791157	42791157	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	192	909	0	ENST00000575354.2:c.218-1G>C		p.X73_splice	ENST00000575354	NM_015125.3	73																																																																															
CIC	0	MSKCC	GRCh37	19	42799167	42799167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	200	1051	0	ENST00000575354.2:c.4651C>G	p.Pro1551Ala	p.P1551A	ENST00000575354	NM_015125.3	1551	Ccc/Gcc																																																																														
REL	0	MSKCC	GRCh37	2	61144151	61144151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	157	762	0	ENST00000295025.8:c.534C>G	p.Asn178Lys	p.N178K	ENST00000295025	NM_002908.2	178	aaC/aaG																																																																														
ERBB4	0	MSKCC	GRCh37	2	212495239	212495239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	155	920	0	ENST00000342788.4:c.2027G>A	p.Arg676Lys	p.R676K	ENST00000342788	NM_005235.2	676	aGa/aAa																																																																														
NF2	0	MSKCC	GRCh37	22	30069270	30069270	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	371	829	1	ENST00000338641.4:c.1135G>T	p.Glu379Ter	p.E379*	ENST00000338641	NM_000268.3	379	Gag/Tag																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185155359	185155359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	158	651	0	ENST00000265026.3:c.600G>C	p.Gln200His	p.Q200H	ENST00000265026	NM_004721.4	200	caG/caC																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55153668	55153669	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	200	933	2	ENST00000257290.5:c.2634_2635delinsAC	p.Trp879Arg	p.W879R	ENST00000257290	NM_006206.4	878	gtCTgg/gtACgg																																																																														
KMT2C	0	MSKCC	GRCh37	7	152007146	152007146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	141	731	0	ENST00000262189.6:c.754C>T	p.His252Tyr	p.H252Y	ENST00000262189	NM_170606.2	252	Cat/Tat																																																																														
MED12	0	MSKCC	GRCh37	X	70344020	70344025	+	inframe_deletion	In_Frame_Del	DEL	AGTGAG	AGTGAG	-			P-0023156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	222	614	0	ENST00000374080.3:c.1762_1767del	p.Ser588_Glu589del	p.S588_E589del	ENST00000374080		586	AGTGAG/-																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	204	587	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
LATS1	0	MSKCC	GRCh37	6	150004331	150004331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	27	547	0	ENST00000253339.5:c.1894C>G	p.Gln632Glu	p.Q632E	ENST00000253339		632	Caa/Gaa																																																																														
HNF1A	0	MSKCC	GRCh37	12	121437308	121437308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	62	776	1	ENST00000257555.6:c.1646C>T	p.Ala549Val	p.A549V	ENST00000257555		549	gCc/gTc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30100227	30100227	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	19	411	0	ENST00000331968.5:c.1393G>C	p.Glu465Gln	p.E465Q	ENST00000331968	NM_002742.2	465	Gaa/Caa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198265563	198265563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	38	802	0	ENST00000335508.6:c.2594G>A	p.Arg865Lys	p.R865K	ENST00000335508	NM_012433.2	865	aGa/aAa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71015117	71015117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	34	578	0	ENST00000318789.4:c.1813G>C	p.Glu605Gln	p.E605Q	ENST00000318789	NM_032682.5	605	Gag/Cag																																																																														
FAT1	0	MSKCC	GRCh37	4	187628749	187628749	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	67	733	0	ENST00000441802.2:c.2233G>C	p.Asp745His	p.D745H	ENST00000441802	NM_005245.3	745	Gac/Cac																																																																														
CARD11	0	MSKCC	GRCh37	7	2979559	2979559	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	43	489	0	ENST00000396946.4:c.688G>C	p.Asp230His	p.D230H	ENST00000396946	NM_032415.4	230	Gat/Cat																																																																														
NBN	0	MSKCC	GRCh37	8	90983440	90983440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	27	504	0	ENST00000265433.3:c.663C>G	p.Ile221Met	p.I221M	ENST00000265433	NM_002485.4	221	atC/atG																																																																														
CREBBP	0	MSKCC	GRCh37	16	3788651	3788651	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023320-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	84	544	1	ENST00000262367.5:c.4303G>T	p.Asp1435Tyr	p.D1435Y	ENST00000262367	NM_004380.2	1435	Gat/Tat																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391330	139391331	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCA			P-0023320-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	213	937	0	ENST00000277541.6:c.6857_6860dup	p.Ser2288GlyfsTer67	p.S2288Gfs*67	ENST00000277541	NM_017617.3	2287	ggc/ggTGGGc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942703	44942703	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0023320-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	63	402	1	ENST00000377967.4:c.3285-2A>G		p.X1095_splice	ENST00000377967	NM_021140.2	1095																																																																															
PREX2	0	MSKCC	GRCh37	8	68864736	68864736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023320-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	31	524	1	ENST00000288368.4:c.107G>A	p.Arg36Gln	p.R36Q	ENST00000288368	NM_024870.2	36	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	204	509	3	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
ESR1	0	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	155	488	0	ENST00000206249.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000206249	NM_000125.3	536	cTc/cCc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98240430	98240430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	88	407	0	ENST00000331920.6:c.1254G>T	p.Lys418Asn	p.K418N	ENST00000331920	NM_000264.3	418	aaG/aaT																																																																														
CBL	0	MSKCC	GRCh37	11	119149323	119149323	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	73	362	0	ENST00000264033.4:c.1331G>T	p.Arg444Met	p.R444M	ENST00000264033	NM_005188.3	444	aGg/aTg																																																																														
CCND2	0	MSKCC	GRCh37	12	4385183	4385183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	56	343	0	ENST00000261254.3:c.208C>G	p.Gln70Glu	p.Q70E	ENST00000261254	NM_001759.3	70	Cag/Gag																																																																														
TBX3	0	MSKCC	GRCh37	12	115112097	115112098	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	63	611	1	ENST00000257566.3:c.1642_1643delinsTT	p.Gly548Leu	p.G548L	ENST00000257566	NM_016569.3	548	GGg/TTg																																																																														
RB1	0	MSKCC	GRCh37	13	49047507	49047507	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	52	312	0	ENST00000267163.4:c.2501C>A	p.Ser834Ter	p.S834*	ENST00000267163	NM_000321.2	834	tCa/tAa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81914531	81914531	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	64	331	0	ENST00000359376.3:c.665A>C	p.Lys222Thr	p.K222T	ENST00000359376	NM_002661.3	222	aAa/aCa																																																																														
TOP1	0	MSKCC	GRCh37	20	39708796	39708796	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	65	310	0	ENST00000361337.2:c.407T>C	p.Leu136Ser	p.L136S	ENST00000361337	NM_003286.2	136	tTa/tCa																																																																														
ATR	0	MSKCC	GRCh37	3	142180857	142180857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	70	359	0	ENST00000350721.4:c.7117G>A	p.Glu2373Lys	p.E2373K	ENST00000350721	NM_001184.3	2373	Gaa/Aaa																																																																														
PRKCI	0	MSKCC	GRCh37	3	169985715	169985715	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	69	369	0	ENST00000295797.4:c.377G>T	p.Arg126Leu	p.R126L	ENST00000295797	NM_002740.5	126	cGt/cTt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139725	55139725	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	66	367	0	ENST00000257290.5:c.1386G>A	p.Trp462Ter	p.W462*	ENST00000257290	NM_006206.4	462	tgG/tgA																																																																														
PREX2	0	MSKCC	GRCh37	8	68972957	68972957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	72	398	0	ENST00000288368.4:c.1282C>A	p.Pro428Thr	p.P428T	ENST00000288368	NM_024870.2	428	Cct/Act																																																																														
AR	0	MSKCC	GRCh37	X	66765773	66765773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	232	359	0	ENST00000374690.3:c.785A>G	p.Gln262Arg	p.Q262R	ENST00000374690	NM_000044.3	262	cAg/cGg																																																																														
XIAP	0	MSKCC	GRCh37	X	123019990	123019990	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	188	290	0	ENST00000355640.3:c.478A>G	p.Met160Val	p.M160V	ENST00000355640		160	Atg/Gtg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112098	115112098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	63	612	0	ENST00000257566.3:c.1642G>T	p.Gly548Trp	p.G548W	ENST00000257566	NM_016569.3	548	Ggg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426061	49426061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	96	513	0	ENST00000301067.7:c.12427G>A	p.Asp4143Asn	p.D4143N	ENST00000301067	NM_003482.3	4143	Gat/Aat																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266731	198266731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	63	410	0	ENST00000335508.6:c.2201G>T	p.Gly734Val	p.G734V	ENST00000335508	NM_012433.2	734	gGt/gTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435186	49435186	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	AG			P-0023342-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	89	395	0	ENST00000301067.7:c.6367delinsCT	p.Thr2123LeufsTer32	p.T2123Lfs*32	ENST00000301067	NM_003482.3	2123	Acc/CTcc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729435	41729435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	95	642	1	ENST00000242208.4:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000242208	NM_002192.2	365	tCa/tTa																																																																														
ALK	0	MSKCC	GRCh37	2	30143293	30143293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	172	778	1	ENST00000389048.3:c.233C>T	p.Ser78Leu	p.S78L	ENST00000389048	NM_004304.4	78	tCg/tTg																																																																														
MET	0	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	374	989	2	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
SPEN	0	MSKCC	GRCh37	1	16237786	16237786	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	47	470	0	ENST00000375759.3:c.1233G>C	p.Trp411Cys	p.W411C	ENST00000375759	NM_015001.2	411	tgG/tgC																																																																														
SPEN	0	MSKCC	GRCh37	1	16257520	16257520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	84	538	0	ENST00000375759.3:c.4785G>C	p.Gln1595His	p.Q1595H	ENST00000375759	NM_015001.2	1595	caG/caC																																																																														
MPL	0	MSKCC	GRCh37	1	43818205	43818205	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	93	549	0	ENST00000372470.3:c.1670C>G	p.Ser557Ter	p.S557*	ENST00000372470	NM_005373.2	557	tCa/tGa																																																																														
MPL	0	MSKCC	GRCh37	1	43818270	43818270	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	113	730	0	ENST00000372470.3:c.1735C>G	p.Pro579Ala	p.P579A	ENST00000372470	NM_005373.2	579	Cct/Gct																																																																														
DDR2	0	MSKCC	GRCh37	1	162729659	162729659	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	80	596	0	ENST00000367921.3:c.745C>G	p.His249Asp	p.H249D	ENST00000367921	NM_006182.2	249	Cac/Gac																																																																														
AXIN1	0	MSKCC	GRCh37	16	343663	343663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	121	1016	3	ENST00000262320.3:c.2011G>A	p.Glu671Lys	p.E671K	ENST00000262320	NM_003502.3	671	Gag/Aag																																																																														
IKZF1	0	MSKCC	GRCh37	7	50444299	50444299	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	41	348	0	ENST00000331340.3:c.229G>C	p.Glu77Gln	p.E77Q	ENST00000331340	NM_006060.4	77	Gaa/Caa																																																																														
ARAF	0	MSKCC	GRCh37	X	47424493	47424493	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	76	631	0	ENST00000377045.4:c.413C>G	p.Ser138Cys	p.S138C	ENST00000377045	NM_001654.4	138	tCc/tGc																																																																														
MED12	0	MSKCC	GRCh37	X	70352234	70352234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	88	595	0	ENST00000374080.3:c.4261G>A	p.Glu1421Lys	p.E1421K	ENST00000374080		1421	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577126	7577126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	216	664	0	ENST00000269305.4:c.812A>T	p.Glu271Val	p.E271V	ENST00000269305	NM_001126112.2	271	gAg/gTg																																																																														
MPL	0	MSKCC	GRCh37	1	43805142	43805142	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	87	663	0	ENST00000372470.3:c.592C>T	p.Gln198Ter	p.Q198*	ENST00000372470	NM_005373.2	198	Cag/Tag																																																																														
CDC73	0	MSKCC	GRCh37	1	193111118	193111118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	70	455	0	ENST00000367435.3:c.651G>T	p.Glu217Asp	p.E217D	ENST00000367435	NM_024529.4	217	gaG/gaT																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741558	17741558	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	70	546	0	ENST00000250003.3:c.229G>C	p.Glu77Gln	p.E77Q	ENST00000250003	NM_002478.4	77	Gag/Cag																																																																														
ATM	0	MSKCC	GRCh37	11	108170484	108170484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	71	510	0	ENST00000278616.4:c.5049C>G	p.Phe1683Leu	p.F1683L	ENST00000278616	NM_000051.3	1683	ttC/ttG																																																																														
ARID2	0	MSKCC	GRCh37	12	46231179	46231179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	163	466	0	ENST00000334344.6:c.1099G>T	p.Asp367Tyr	p.D367Y	ENST00000334344	NM_152641.2	367	Gat/Tat																																																																														
LATS2	0	MSKCC	GRCh37	13	21563399	21563399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	256	929	2	ENST00000382592.4:c.520G>A	p.Glu174Lys	p.E174K	ENST00000382592	NM_014572.2	174	Gaa/Aaa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38064133	38064133	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	100	596	0	ENST00000250448.2:c.45G>A	p.Trp15Ter	p.W15*	ENST00000250448	NM_004496.3	15	tgG/tgA																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170756	11170756	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	171	758	0	ENST00000344626.4:c.4804A>T	p.Lys1602Ter	p.K1602*	ENST00000344626	NM_003072.3	1602	Aag/Tag																																																																														
POLD1	0	MSKCC	GRCh37	19	50912435	50912435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	245	898	0	ENST00000440232.2:c.1949C>T	p.Ser650Leu	p.S650L	ENST00000440232	NM_002691.3	650	tCa/tTa																																																																														
ALK	0	MSKCC	GRCh37	2	30143522	30143522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	35	384	0	ENST00000389048.3:c.4G>A	p.Gly2Arg	p.G2R	ENST00000389048	NM_004304.4	2	Gga/Aga																																																																														
PBRM1	0	MSKCC	GRCh37	3	52702579	52702579	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	198	754	0	ENST00000394830.3:c.319G>C	p.Asp107His	p.D107H	ENST00000394830	NM_018313.4	107	Gat/Cat																																																																														
IL7R	0	MSKCC	GRCh37	5	35876458	35876458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	177	717	0	ENST00000303115.3:c.1250C>A	p.Pro417His	p.P417H	ENST00000303115	NM_002185.3	417	cCt/cAt																																																																														
ROS1	0	MSKCC	GRCh37	6	117662382	117662383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	81	629	0	ENST00000368508.3:c.4994dup	p.Leu1665PhefsTer7	p.L1665Ffs*7	ENST00000368508	NM_002944.2	1665	ttg/ttTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151917721	151917721	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	40	192	0	ENST00000262189.6:c.3599C>G	p.Ser1200Ter	p.S1200*	ENST00000262189	NM_170606.2	1200	tCa/tGa																																																																														
STAG2	0	MSKCC	GRCh37	X	123217369	123217369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	48	603	0	ENST00000218089.9:c.3023C>G	p.Ser1008Cys	p.S1008C	ENST00000218089	NM_001042749.1	1008	tCt/tGt																																																																														
FAM58A	0	MSKCC	GRCh37	X	152864441	152864441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	62	263	0	ENST00000406277.2:c.85G>T	p.Ala29Ser	p.A29S	ENST00000406277	NM_152274.4	29	Gcg/Tcg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	45	487	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																														
AKT3	0	MSKCC	GRCh37	1	243809308	243809308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	325	374	2	ENST00000263826.5:c.316G>T	p.Ala106Ser	p.A106S	ENST00000263826	NM_005465.4	106	Gca/Tca																																																																														
RB1	0	MSKCC	GRCh37	13	48941665	48941665	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0023904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	167	297	0	ENST00000267163.4:c.975T>G	p.Tyr325Ter	p.Y325*	ENST00000267163	NM_000321.2	325	taT/taG																																																																														
IRS2	0	MSKCC	GRCh37	13	110434526	110434526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	126	527	0	ENST00000375856.3:c.3875G>A	p.Gly1292Asp	p.G1292D	ENST00000375856	NM_003749.2	1292	gGt/gAt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032005	10032005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	182	562	2	ENST00000330684.3:c.818C>A	p.Pro273Gln	p.P273Q	ENST00000330684	NM_001134407.1	273	cCa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0023904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	300	551	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	176	481	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
EPHA7	0	MSKCC	GRCh37	6	93955083	93955083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	147	356	1	ENST00000369303.4:c.2815A>G	p.Arg939Gly	p.R939G	ENST00000369303	NM_004440.3	939	Aga/Gga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0023904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	45	417	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
BRAF	0	MSKCC	GRCh37	7	140434503	140434503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	83	313	2	ENST00000288602.6:c.2195C>T	p.Ser732Phe	p.S732F	ENST00000288602	NM_004333.4	732	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			610	195	556	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252855	36252856	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	C			P-0023984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	124	307	0	ENST00000300305.3:c.506dup	p.Gly170ArgfsTer43	p.G170Rfs*43	ENST00000300305		169	aga/agGa																																																																														
CBFB	0	MSKCC	GRCh37	16	67063347	67063347	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	100	366	1	ENST00000412916.2:c.37G>T	p.Glu13Ter	p.E13*	ENST00000412916		13	Gag/Tag																																																																														
SOX9	0	MSKCC	GRCh37	17	70120528	70120528	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0023984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			720	398	825	0	ENST00000245479.2:c.1530A>T	p.Ter510CysextTer49	p.*510Cext*49	ENST00000245479	NM_000346.3	510	tgA/tgT																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845971	151845972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023984-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	34	439	0	ENST00000262189.6:c.13040dup	p.Leu4348AlafsTer3	p.L4348Afs*3	ENST00000262189	NM_170606.2	4347	ccg/ccCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024200-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	128	460	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610113	10610113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024200-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	247	719	0	ENST00000171111.5:c.597G>T	p.Leu199Phe	p.L199F	ENST00000171111	NM_203500.1	199	ttG/ttT																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857426	9857426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024200-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	83	472	0	ENST00000330684.3:c.3975C>A	p.Tyr1325Ter	p.Y1325*	ENST00000330684	NM_001134407.1	1325	taC/taA																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120508998	120508998	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0024200-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	71	453	0	ENST00000256646.2:c.1567+1del		p.X523_splice	ENST00000256646	NM_024408.3	523																																																																															
ERF	0	MSKCC	GRCh37	19	42753837	42753842	+	inframe_deletion	In_Frame_Del	DEL	GGAAGT	GGAAGT	-			P-0024200-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	232	906	0	ENST00000222329.4:c.422_427del	p.His141_Phe142del	p.H141_F142del	ENST00000222329	NM_006494.2	141	cACTTCCgc/cgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187532770	187532770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024200-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	81	612	0	ENST00000441802.2:c.9623G>T	p.Arg3208Met	p.R3208M	ENST00000441802	NM_005245.3	3208	aGg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	200	851	2	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
PARK2	0	MSKCC	GRCh37	6	162683659	162683659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	50	607	0	ENST00000366898.1:c.310C>T	p.Arg104Trp	p.R104W	ENST00000366898	NM_004562.2	104	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112154933	112154933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	55	739	1	ENST00000257430.4:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000257430	NM_000038.5	402	Cgt/Tgt																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46546394	46546394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	42	648	0	ENST00000262741.5:c.135G>C	p.Met45Ile	p.M45I	ENST00000262741	NM_003629.3	45	atG/atC																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430582	78430582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	45	720	0	ENST00000370768.2:c.708G>C	p.Arg236Ser	p.R236S	ENST00000370768	NM_003902.3	236	agG/agC																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138858	64138858	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs111697527		P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	111	438	1	ENST00000334205.4:c.2225G>T	p.Arg742Leu	p.R742L	ENST00000334205	NM_003942.2	742	cGc/cTc																																																																														
KDM5A	0	MSKCC	GRCh37	12	442811	442811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	60	424	0	ENST00000399788.2:c.1495G>C	p.Glu499Gln	p.E499Q	ENST00000399788	NM_001042603.1	499	Gag/Cag																																																																														
MDM2	0	MSKCC	GRCh37	12	69222604	69222604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	43	787	0	ENST00000462284.1:c.577G>A	p.Asp193Asn	p.D193N	ENST00000462284	NM_002392.5	193	Gat/Aat																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43724477	43724477	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	48	1012	0	ENST00000382044.4:c.3590A>T	p.Gln1197Leu	p.Q1197L	ENST00000382044	NM_001141980.1	1197	cAa/cTa																																																																														
PMS1	0	MSKCC	GRCh37	2	190718779	190718779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	75	471	0	ENST00000441310.2:c.937G>T	p.Asp313Tyr	p.D313Y	ENST00000441310	NM_000534.4	313	Gat/Tat																																																																														
PMS1	0	MSKCC	GRCh37	2	190719766	190719766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	24	424	0	ENST00000441310.2:c.1768C>G	p.Leu590Val	p.L590V	ENST00000441310	NM_000534.4	590	Ctc/Gtc																																																																														
SETD2	0	MSKCC	GRCh37	3	47125825	47125825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	67	377	1	ENST00000409792.3:c.5445G>T	p.Leu1815Phe	p.L1815F	ENST00000409792	NM_014159.6	1815	ttG/ttT																																																																														
TET2	0	MSKCC	GRCh37	4	106164061	106164061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	25	442	0	ENST00000380013.4:c.3571C>G	p.Gln1191Glu	p.Q1191E	ENST00000380013	NM_001127208.2	1191	Cag/Gag																																																																														
HLA-B	0	MSKCC	GRCh37	6	31322916	31322916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	184	1016	0	ENST00000412585.2:c.980T>C	p.Val327Ala	p.V327A	ENST00000412585	NM_005514.6	327	gTc/gCc																																																																														
KMT2C	0	MSKCC	GRCh37	7	152027747	152027747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	62	918	1	ENST00000262189.6:c.328C>T	p.Arg110Ter	p.R110*	ENST00000262189	NM_170606.2	110	Cga/Tga																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205115	38205115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	66	885	3	ENST00000317025.8:c.575G>T	p.Ser192Ile	p.S192I	ENST00000317025	NM_023034.1	192	aGc/aTc																																																																														
PREX2	0	MSKCC	GRCh37	8	68995534	68995534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	39	883	1	ENST00000288368.4:c.1938G>A	p.Met646Ile	p.M646I	ENST00000288368	NM_024870.2	646	atG/atA																																																																														
PREX2	0	MSKCC	GRCh37	8	69009337	69009337	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	46	584	0	ENST00000288368.4:c.2454A>T	p.Glu818Asp	p.E818D	ENST00000288368	NM_024870.2	818	gaA/gaT																																																																														
PREX2	0	MSKCC	GRCh37	8	69050741	69050741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	35	453	0	ENST00000288368.4:c.4076C>A	p.Pro1359His	p.P1359H	ENST00000288368	NM_024870.2	1359	cCt/cAt																																																																														
NBN	0	MSKCC	GRCh37	8	90967543	90967543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	33	592	0	ENST00000265433.3:c.1365C>G	p.Ile455Met	p.I455M	ENST00000265433	NM_002485.4	455	atC/atG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0024356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	561	816	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
NTRK1	0	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1255	225	1063	0	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	438	943	1	ENST00000269305.4:c.645T>A	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agA																																																																														
DDR2	0	MSKCC	GRCh37	1	162743310	162743310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	71	654	1	ENST00000367921.3:c.1780G>A	p.Ala594Thr	p.A594T	ENST00000367921	NM_006182.2	594	Gcc/Acc																																																																														
RB1	0	MSKCC	GRCh37	13	48921921	48921961	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACGAAAAAATGTTAAAAAGTCATAATGTTTTTCTTTTCAGG	ACGAAAAAATGTTAAAAAGTCATAATGTTTTTCTTTTCAGG	-			P-0024356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	48	577	1	ENST00000267163.4:c.501-38_503del		p.X167_splice	ENST00000267163	NM_000321.2	167																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0024397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	251	496	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
DIS3	0	MSKCC	GRCh37	13	73355129	73355129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	234	425	0	ENST00000377767.4:c.241G>A	p.Glu81Lys	p.E81K	ENST00000377767	NM_014953.3	81	Gag/Aag																																																																														
ARID1B	0	MSKCC	GRCh37	6	157150547	157150547	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	256	459	1	ENST00000346085.5:c.1729C>T	p.Gln577Ter	p.Q577*	ENST00000346085	NM_020732.3	577	Cag/Tag																																																																														
GATA3	0	MSKCC	GRCh37	10	8106037	8106050	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGCGGGCTCTAT	CCTGCGGGCTCTAT	-			P-0024397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			555	298	552	0	ENST00000346208.3:c.858_871del	p.Cys287GlnfsTer11	p.C287Qfs*11	ENST00000346208		286	gCCTGCGGGCTCTAT/g																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827919	40827919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			615	279	525	0	ENST00000373198.4:c.2509G>A	p.Glu837Lys	p.E837K	ENST00000373198	NM_133170.3	837	Gaa/Aaa																																																																														
CBL	0	MSKCC	GRCh37	11	119148907	119148907	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	32	397	0	ENST00000264033.4:c.1127C>G	p.Ser376Cys	p.S376C	ENST00000264033	NM_005188.3	376	tCc/tGc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2222595	2222595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			782	311	531	0	ENST00000326181.6:c.789G>T	p.Lys263Asn	p.K263N	ENST00000326181	NM_032271.2	263	aaG/aaT																																																																														
FANCA	0	MSKCC	GRCh37	16	89818569	89818569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	255	601	0	ENST00000389301.3:c.3043G>A	p.Glu1015Lys	p.E1015K	ENST00000389301	NM_000135.2	1015	Gag/Aag																																																																														
SOX9	0	MSKCC	GRCh37	17	70119682	70119683	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0024397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			598	564	527	0	ENST00000245479.2:c.687dup		p.X229_splice	ENST00000245479	NM_000346.3	229																																																																															
AXL	0	MSKCC	GRCh37	19	41745607	41745607	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			730	290	673	0	ENST00000301178.4:c.1294C>T	p.Gln432Ter	p.Q432*	ENST00000301178	NM_021913.4	432	Cag/Tag																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55144549	55144549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024397-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	203	465	0	ENST00000257290.5:c.2023G>A	p.Glu675Lys	p.E675K	ENST00000257290	NM_006206.4	675	Gag/Aag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881039	37881039	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024589-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	181	671	0	ENST00000269571.5:c.2368C>G	p.Leu790Val	p.L790V	ENST00000269571		790	Ctg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0024653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	47	729	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0024653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	74	738	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	78	765	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	78	765	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	31	498	1	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag																																																																														
YES1	0	MSKCC	GRCh37	18	751726	751726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	40	614	0	ENST00000314574.4:c.350G>T	p.Arg117Ile	p.R117I	ENST00000314574	NM_005433.3	117	aGa/aTa																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	78	765	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	100	355	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	36	255	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	36	255	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	36	255	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259199	36259199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	117	416	0	ENST00000300305.3:c.292delC	p.Leu98SerfsTer24	p.L98Sfs*24	ENST00000300305		98	Ctc/tc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344186	118344186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	162	564	0	ENST00000534358.1:c.2312C>T	p.Thr771Ile	p.T771I	ENST00000534358	NM_005933.3	771	aCc/aTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0024761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	128	539	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	283	688	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
ARID2	0	MSKCC	GRCh37	12	46211506	46211506	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	55	341	0	ENST00000334344.6:c.472T>A	p.Tyr158Asn	p.Y158N	ENST00000334344	NM_152641.2	158	Tat/Aat																																																																														
FGF3	0	MSKCC	GRCh37	11	69633610	69633610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	78	103	0	ENST00000334134.2:c.92G>T	p.Gly31Val	p.G31V	ENST00000334134	NM_005247.2	31	gGc/gTc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43712692	43712692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	323	632	0	ENST00000382044.4:c.4492G>T	p.Ala1498Ser	p.A1498S	ENST00000382044	NM_001141980.1	1498	Gcc/Tcc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9892220	9892220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	268	562	1	ENST00000330684.3:c.2270C>A	p.Ala757Asp	p.A757D	ENST00000330684	NM_001134407.1	757	gCc/gAc																																																																														
CYLD	0	MSKCC	GRCh37	16	50783988	50783988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	318	613	0	ENST00000398568.2:c.379G>T	p.Val127Leu	p.V127L	ENST00000398568	NM_001042412.1	127	Gtg/Ttg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5208399	5208399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	258	473	2	ENST00000357368.4:c.5491G>T	p.Gly1831Cys	p.G1831C	ENST00000357368	NM_002850.3	1831	Ggc/Tgc																																																																														
EP300	0	MSKCC	GRCh37	22	41568577	41568577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	318	612	0	ENST00000263253.7:c.4527G>T	p.Trp1509Cys	p.W1509C	ENST00000263253	NM_001429.3	1509	tgG/tgT																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713761	30713761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	188	375	0	ENST00000359013.4:c.1161C>A	p.His387Gln	p.H387Q	ENST00000359013	NM_001024847.2	387	caC/caA																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031919	26031919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	186	387	0	ENST00000244661.2:c.370G>C	p.Asp124His	p.D124H	ENST00000244661	NM_003537.3	124	Gac/Cac																																																																														
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	159	524	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
TP63	0	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	184	571	0	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
AMER1	0	MSKCC	GRCh37	X	63411420	63411420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	91	565	0	ENST00000330258.3:c.1747G>T	p.Ala583Ser	p.A583S	ENST00000330258	NM_152424.3	583	Gca/Tca																																																																														
PTPRT	0	MSKCC	GRCh37	20	41076937	41076937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	104	575	0	ENST00000373198.4:c.1483G>T	p.Gly495Trp	p.G495W	ENST00000373198	NM_133170.3	495	Ggg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7579389	7579389	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	239	747	1	ENST00000269305.4:c.298del	p.Gln100ArgfsTer23	p.Q100Rfs*23	ENST00000269305	NM_001126112.2	100	Cag/ag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486175	8486175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	150	405	0	ENST00000356435.5:c.2642C>A	p.Thr881Lys	p.T881K	ENST00000356435		881	aCa/aAa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18716403	18716403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	104	476	0	ENST00000266497.5:c.3750G>T	p.Gln1250His	p.Q1250H	ENST00000266497		1250	caG/caT																																																																														
POLE	0	MSKCC	GRCh37	12	133252687	133252687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	69	552	0	ENST00000320574.5:c.1013C>T	p.Pro338Leu	p.P338L	ENST00000320574	NM_006231.2	338	cCc/cTc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88799210	88799210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	205	605	1	ENST00000360948.2:c.175G>T	p.Gly59Trp	p.G59W	ENST00000360948	NM_001012338.2	59	Ggg/Tgg																																																																														
CTCF	0	MSKCC	GRCh37	16	67654637	67654637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	234	580	1	ENST00000264010.4:c.1124G>T	p.Gly375Val	p.G375V	ENST00000264010	NM_006565.3	375	gGa/gTa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41209088	41209088	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	228	621	0	ENST00000357654.3:c.5258G>C	p.Arg1753Thr	p.R1753T	ENST00000357654	NM_007294.3	1753	aGa/aCa																																																																														
RNF43	0	MSKCC	GRCh37	17	56440688	56440688	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	83	671	1	ENST00000407977.2:c.530A>T	p.Tyr177Phe	p.Y177F	ENST00000407977		177	tAc/tTc																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66525117	66525117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	70	287	0	ENST00000358598.2:c.876C>G	p.Phe292Leu	p.F292L	ENST00000358598	NM_212471.2	292	ttC/ttG																																																																														
UPF1	0	MSKCC	GRCh37	19	18971792	18971792	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	161	481	1	ENST00000262803.5:c.2457+1G>T		p.X819_splice	ENST00000262803	NM_002911.3	819																																																																															
PTPRT	0	MSKCC	GRCh37	20	40980757	40980757	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	46	487	0	ENST00000373198.4:c.1729C>G	p.Pro577Ala	p.P577A	ENST00000373198	NM_133170.3	577	Cct/Gct																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101008	41101008	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	87	541	1	ENST00000373198.4:c.1348C>G	p.Arg450Gly	p.R450G	ENST00000373198	NM_133170.3	450	Cga/Gga																																																																														
SETD2	0	MSKCC	GRCh37	3	47164763	47164764	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	55	435	0	ENST00000409792.3:c.1362_1363delinsTT	p.Arg454_Ala455delinsSerSer	p.R454_A455delinsSS	ENST00000409792	NM_014159.6	454	agAGca/agTTca																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521614	89521614	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	156	397	0	ENST00000336596.2:c.2691G>T	p.Arg897Ser	p.R897S	ENST00000336596	NM_005233.5	897	agG/agT																																																																														
WHSC1	0	MSKCC	GRCh37	4	1918750	1918750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	134	415	0	ENST00000382891.5:c.913G>T	p.Ala305Ser	p.A305S	ENST00000382891	NM_133335.3	305	Gct/Tct																																																																														
KDR	0	MSKCC	GRCh37	4	55968139	55968139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	109	515	3	ENST00000263923.4:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000263923	NM_002253.2	731	Gac/Aac																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356347	66356347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	85	524	0	ENST00000273854.3:c.1150G>T	p.Gly384Cys	p.G384C	ENST00000273854	NM_004439.5	384	Ggt/Tgt																																																																														
FAT1	0	MSKCC	GRCh37	4	187522458	187522458	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	116	586	0	ENST00000441802.2:c.11605A>G	p.Met3869Val	p.M3869V	ENST00000441802	NM_005245.3	3869	Atg/Gtg																																																																														
FAT1	0	MSKCC	GRCh37	4	187525586	187525586	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	226	597	0	ENST00000441802.2:c.10493T>A	p.Leu3498Gln	p.L3498Q	ENST00000441802	NM_005245.3	3498	cTg/cAg																																																																														
FAT1	0	MSKCC	GRCh37	4	187531164	187531164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	128	386	2	ENST00000441802.2:c.9859G>T	p.Val3287Leu	p.V3287L	ENST00000441802	NM_005245.3	3287	Gta/Tta																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250476	26250476	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	148	560	0	ENST00000446824.2:c.358A>T	p.Ile120Phe	p.I120F	ENST00000446824	NM_021018.2	120	Atc/Ttc																																																																														
LATS1	0	MSKCC	GRCh37	6	150001138	150001138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	249	516	0	ENST00000253339.5:c.2466G>T	p.Met822Ile	p.M822I	ENST00000253339		822	atG/atT																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106520076	106520076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	147	368	0	ENST00000359195.3:c.2504G>T	p.Gly835Val	p.G835V	ENST00000359195	NM_002649.2	835	gGt/gTt																																																																														
MET	0	MSKCC	GRCh37	7	116423362	116423362	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	85	299	0	ENST00000397752.3:c.3637G>C	p.Asp1213His	p.D1213H	ENST00000397752	NM_000245.2	1213	Gat/Cat																																																																														
SYK	0	MSKCC	GRCh37	9	93650898	93650898	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	75	520	0	ENST00000375746.1:c.1824C>A	p.Cys608Ter	p.C608*	ENST00000375746	NM_001174167.1	608	tgC/tgA																																																																														
ARAF	0	MSKCC	GRCh37	X	47426121	47426122	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	1066	792	2	ENST00000377045.4:c.641_642delinsTT	p.Ser214Phe	p.S214F	ENST00000377045	NM_001654.4	214	tCC/tTT																																																																														
AMER1	0	MSKCC	GRCh37	X	63410712	63410712	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	110	663	0	ENST00000330258.3:c.2455G>C	p.Glu819Gln	p.E819Q	ENST00000330258	NM_152424.3	819	Gaa/Caa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025349-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			541	45	451	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115695	8115708	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTTTAGATTAACA	TGTTTAGATTAACA	GT			P-0025349-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			393	40	405	3	ENST00000346208.3:c.1048-7_1054delinsGT		p.X350_splice	ENST00000346208		350																																																																															
CBFB	0	MSKCC	GRCh37	16	67070564	67070564	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025349-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			239	119	319	0	ENST00000412916.2:c.188A>T	p.Asn63Ile	p.N63I	ENST00000412916		63	aAt/aTt																																																																														
CTCF	0	MSKCC	GRCh37	16	67644799	67644802	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0025349-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			487	60	557	0	ENST00000264010.4:c.67_70del	p.Lys23LeufsTer38	p.K23Lfs*38	ENST00000264010	NM_006565.3	22	AGAAag/ag																																																																														
CDH1	0	MSKCC	GRCh37	16	68853287	68853308	+	frameshift_variant	Frame_Shift_Del	DEL	AGAACAGCACGTACACAGCCCT	AGAACAGCACGTACACAGCCCT	-			P-0025349-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			374	149	646	0	ENST00000261769.5:c.1671_1692del	p.Asn558SerfsTer2	p.N558Sfs*2	ENST00000261769	NM_004360.3	557	aAGAACAGCACGTACACAGCCCTa/aa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171636	36171637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025349-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			536	47	424	0	ENST00000300305.3:c.928dup	p.Met310AsnfsTer290	p.M310Nfs*290	ENST00000300305		310	atg/aAtg																																																																														
CDH1	0	MSKCC	GRCh37	16	68853312	68853312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025349-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			353	150	575	0	ENST00000261769.5:c.1695C>G	p.Ile565Met	p.I565M	ENST00000261769	NM_004360.3	565	atC/atG																																																																														
GATA3	0	MSKCC	GRCh37	10	8111506	8111507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCCAATGGGGACCCTGTCTGCAATGCCTGTGGGCTCTAC			P-0025483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			858	113	518	0	ENST00000346208.3:c.994_1033dup	p.Tyr345CysfsTer20	p.Y345Cfs*20	ENST00000346208		331	aat/aaTGCCAATGGGGACCCTGTCTGCAATGCCTGTGGGCTCTACt																																																																														
TP53	0	MSKCC	GRCh37	17	7578382	7578384	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	GAG	GAG	-			P-0025483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			177	152	494	0	ENST00000269305.4:c.546_548del	p.Cys182_Ser183delinsTer	p.C182_S183delins*	ENST00000269305	NM_001126112.2	182	tgCTCa/tga																																																																														
SETD2	0	MSKCC	GRCh37	3	47125697	47125697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025483-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			149	145	327	0	ENST00000409792.3:c.5573C>T	p.Pro1858Leu	p.P1858L	ENST00000409792	NM_014159.6	1858	cCt/cTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025636-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			717	181	584	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025636-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	143	444	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																														
CDH1	0	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025636-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	180	447	0	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089676	27089676	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025636-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			516	163	499	0	ENST00000324856.7:c.2632C>T	p.Gln878Ter	p.Q878*	ENST00000324856	NM_006015.4	878	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025643-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	22	433	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0025643-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			698	46	559	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	118	461	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	211	561	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	169	315	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	169	315	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	169	315	0	ENST00000304494.5:c.151-2A>G		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27088658	27088659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	119	574	0	ENST00000324856.7:c.2272dup	p.Gln758ProfsTer59	p.Q758Pfs*59	ENST00000324856	NM_006015.4	756	aac/aaCc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603080	48603080	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	144	426	1	ENST00000342988.3:c.1381C>T	p.Gln461Ter	p.Q461*	ENST00000342988	NM_005359.5	461	Cag/Tag																																																																														
FANCC	0	MSKCC	GRCh37	9	97869512	97869512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	133	459	0	ENST00000289081.3:c.1369T>C	p.Ser457Pro	p.S457P	ENST00000289081	NM_000136.2	457	Tcc/Ccc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026530-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			563	205	513	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0026530-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			609	194	411	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
SDHB	0	MSKCC	GRCh37	1	17371376	17371376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026530-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			437	134	418	0	ENST00000375499.3:c.80G>T	p.Arg27Leu	p.R27L	ENST00000375499	NM_003000.2	27	cGa/cTa																																																																														
KIT	0	MSKCC	GRCh37	4	55593588	55593605	+	inframe_deletion	In_Frame_Del	DEL	ATGTATGAAGTACAGTGG	ATGTATGAAGTACAGTGG	-			P-0026664-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	274	490	0	ENST00000288135.5:c.1655_1672del	p.Met552_Trp557del	p.M552_W557del	ENST00000288135	NM_000222.2	552	ATGTATGAAGTACAGTGG/-																																																																														
NSD1	0	MSKCC	GRCh37	5	176636701	176636701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	165	481	1	ENST00000439151.2:c.1301C>T	p.Pro434Leu	p.P434L	ENST00000439151	NM_022455.4	434	cCc/cTc																																																																														
SYK	0	MSKCC	GRCh37	9	93624611	93624611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	81	549	1	ENST00000375746.1:c.702C>A	p.Phe234Leu	p.F234L	ENST00000375746	NM_001174167.1	234	ttC/ttA																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272266	15272266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	75	607	0	ENST00000263388.2:c.6173C>T	p.Ser2058Leu	p.S2058L	ENST00000263388	NM_000435.2	2058	tCg/tTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89624295	89624298	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0026838-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	54	454	0	ENST00000371953.3:c.69_72del	p.Leu23PhefsTer2	p.L23Ffs*2	ENST00000371953	NM_000314.4	23	ttAGAC/tt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	89	635	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
AR	0	MSKCC	GRCh37	X	66931247	66931247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	25	215	0	ENST00000374690.3:c.1889G>A	p.Arg630Gln	p.R630Q	ENST00000374690	NM_000044.3	630	cGg/cAg																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39567798	39567798	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	40	434	0	ENST00000262039.4:c.554G>C	p.Gly185Ala	p.G185A	ENST00000262039	NM_002647.2	185	gGa/gCa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952085	178952088	+	missense_variant	Missense_Mutation	ONP	ATCA	ATCA	GTCG			P-0027550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	87	307	0	ENST00000263967.3:c.3140_3143delinsGTCG	p.His1047_His1048delinsArgArg	p.H1047_H1048delinsRR	ENST00000263967	NM_006218.2	1047	cATCAt/cGTCGt																																																																														
SOX17	0	MSKCC	GRCh37	8	55372427	55372427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	324	662	0	ENST00000297316.4:c.1117C>T	p.Pro373Ser	p.P373S	ENST00000297316	NM_022454.3	373	Cct/Tct																																																																														
IRS1	0	MSKCC	GRCh37	2	227660421	227660441	+	inframe_deletion	In_Frame_Del	DEL	AGCTTACAGGGGCAGCTGGCG	AGCTTACAGGGGCAGCTGGCG	-			P-0027938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	154	384	0	ENST00000305123.5:c.3014_3034del	p.Ser1005_Ser1011del	p.S1005_S1011del	ENST00000305123	NM_005544.2	1005	tCGCCAGCTGCCCCTGTAAGCTat/tat																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028139-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	2281	770	0	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																														
CSDE1	0	MSKCC	GRCh37	1	115268978	115268978	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028139-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	132	483	0	ENST00000438362.2:c.1632G>C	p.Arg544Ser	p.R544S	ENST00000438362	NM_001242891.1	544	agG/agC																																																																														
EP300	0	MSKCC	GRCh37	22	41489052	41489095	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCTAAACTCTCATCTCCGGCCCTCTCGGCGTCCGCCAGCGAT	GGCCTAAACTCTCATCTCCGGCCCTCTCGGCGTCCGCCAGCGAT	-			P-0028139-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	65	485	0	ENST00000263253.7:c.47_90del	p.Pro16HisfsTer8	p.P16Hfs*8	ENST00000263253	NM_001429.3	15	cGGCCTAAACTCTCATCTCCGGCCCTCTCGGCGTCCGCCAGCGAT/c																																																																														
NPM1	0	MSKCC	GRCh37	5	170814962	170814962	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028139-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	105	244	0	ENST00000296930.5:c.10T>G	p.Ser4Ala	p.S4A	ENST00000296930	NM_002520.6	4	Tcg/Gcg																																																																														
STAG2	0	MSKCC	GRCh37	X	123179168	123179168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028159-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			376	119	215	0	ENST00000218089.9:c.617G>A	p.Gly206Glu	p.G206E	ENST00000218089	NM_001042749.1	206	gGa/gAa																																																																														
MTOR	0	MSKCC	GRCh37	1	11300383	11300383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	148	424	0	ENST00000361445.4:c.1763C>T	p.Thr588Met	p.T588M	ENST00000361445	NM_004958.3	588	aCg/aTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11300386	11300386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	153	416	0	ENST00000361445.4:c.1760G>A	p.Arg587Gln	p.R587Q	ENST00000361445	NM_004958.3	587	cGa/cAa																																																																														
SPEN	0	MSKCC	GRCh37	1	16261683	16261683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149575630		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	203	639	0	ENST00000375759.3:c.8948C>T	p.Thr2983Met	p.T2983M	ENST00000375759	NM_015001.2	2983	aCg/aTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106930	27106930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	161	551	0	ENST00000324856.7:c.6541G>T	p.Ala2181Ser	p.A2181S	ENST00000324856	NM_006015.4	2181	Gca/Tca																																																																														
RAD54L	0	MSKCC	GRCh37	1	46739353	46739353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	144	485	0	ENST00000371975.4:c.1544A>G	p.Lys515Arg	p.K515R	ENST00000371975	NM_003579.3	515	aAa/aGa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	145	497	3	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
NEGR1	0	MSKCC	GRCh37	1	72058499	72058499	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	132	343	2	ENST00000357731.5:c.940+1G>A		p.X314_splice	ENST00000357731	NM_173808.2	314																																																																															
FAM46C	0	MSKCC	GRCh37	1	118166515	118166515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	118	444	0	ENST00000369448.3:c.1025C>T	p.Ala342Val	p.A342V	ENST00000369448	NM_017709.3	342	gCg/gTg																																																																														
IKBKE	0	MSKCC	GRCh37	1	206653456	206653456	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	110	465	0	ENST00000367120.3:c.1340T>G	p.Met447Arg	p.M447R	ENST00000367120	NM_014002.3	447	aTg/aGg																																																																														
PARP1	0	MSKCC	GRCh37	1	226567661	226567661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183533639		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	158	453	2	ENST00000366794.5:c.1505C>T	p.Ala502Val	p.A502V	ENST00000366794	NM_001618.3	502	gCg/gTg																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724631	112724631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	194	560	1	ENST00000369452.4:c.515G>A	p.Arg172Gln	p.R172Q	ENST00000369452	NM_007373.3	172	cGg/cAg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114917780	114917780	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	130	370	0	ENST00000543371.1:c.1270G>A	p.Gly424Arg	p.G424R	ENST00000543371	NM_001198531.1	424	Gga/Aga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	255	471	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942195	71942195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	224	725	0	ENST00000298229.2:c.1459G>A	p.Gly487Arg	p.G487R	ENST00000298229	NM_001567.3	487	Ggg/Agg																																																																														
YAP1	0	MSKCC	GRCh37	11	101981861	101981863	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	192	722	0	ENST00000282441.5:c.286_288del	p.Phe96del	p.F96del	ENST00000282441	NM_001130145.2	94	tcCTTc/tcc																																																																														
ATM	0	MSKCC	GRCh37	11	108235944	108235944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	145	442	0	ENST00000278616.4:c.8986A>G	p.Ser2996Gly	p.S2996G	ENST00000278616	NM_000051.3	2996	Agt/Ggt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435202	18435202	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	120	387	0	ENST00000266497.5:c.192del	p.Phe64LeufsTer15	p.F64Lfs*15	ENST00000266497		63	Ttt/tt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434384	49434384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	209	758	1	ENST00000301067.7:c.7169C>T	p.Pro2390Leu	p.P2390L	ENST00000301067	NM_003482.3	2390	cCg/cTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438529	49438529	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	46	645	0	ENST00000301067.7:c.4961A>G	p.Glu1654Gly	p.E1654G	ENST00000301067	NM_003482.3	1654	gAa/gGa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443787	49443787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	235	829	1	ENST00000301067.7:c.3584C>T	p.Thr1195Ile	p.T1195I	ENST00000301067	NM_003482.3	1195	aCa/aTa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481899	56481899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	199	694	0	ENST00000267101.3:c.827C>A	p.Pro276His	p.P276H	ENST00000267101	NM_001982.3	276	cCc/cAc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489582	56489582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56387488		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	138	465	0	ENST00000267101.3:c.2047C>T	p.Arg683Trp	p.R683W	ENST00000267101	NM_001982.3	683	Cgg/Tgg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	228	828	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	206	704	10	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
FLT1	0	MSKCC	GRCh37	13	28959121	28959121	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137937570		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	235	383	0	ENST00000282397.4:c.2017G>A	p.Ala673Thr	p.A673T	ENST00000282397	NM_002019.4	673	Gcc/Acc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911359	32911359	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	359	553	0	ENST00000380152.3:c.2867A>G	p.Lys956Arg	p.K956R	ENST00000380152		956	aAa/aGa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913965	32913965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	352	621	0	ENST00000380152.3:c.5473G>A	p.Ala1825Thr	p.A1825T	ENST00000380152		1825	Gca/Aca																																																																														
FOXO1	0	MSKCC	GRCh37	13	41240069	41240069	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	12	30	0	ENST00000379561.5:c.281T>C	p.Val94Ala	p.V94A	ENST00000379561	NM_002015.3	94	gTg/gCg																																																																														
IRS2	0	MSKCC	GRCh37	13	110436506	110436506	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	75	782	1	ENST00000375856.3:c.1895A>G	p.Tyr632Cys	p.Y632C	ENST00000375856	NM_003749.2	632	tAc/tGc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30102151	30102151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	104	475	0	ENST00000331968.5:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000331968	NM_002742.2	439	cGg/cAg																																																																														
MGA	0	MSKCC	GRCh37	15	41962080	41962080	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	143	462	0	ENST00000219905.7:c.988C>T	p.Arg330Ter	p.R330*	ENST00000219905	NM_001164273.1	330	Cga/Tga																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	214	551	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43707837	43707837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	224	810	1	ENST00000382044.4:c.5044C>T	p.Arg1682Trp	p.R1682W	ENST00000382044	NM_001141980.1	1682	Cgg/Tgg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43749148	43749148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	244	791	0	ENST00000382044.4:c.1658C>T	p.Thr553Met	p.T553M	ENST00000382044	NM_001141980.1	553	aCg/aTg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88690572	88690572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	147	509	0	ENST00000360948.2:c.458G>A	p.Arg153Gln	p.R153Q	ENST00000360948	NM_001012338.2	153	cGg/cAg																																																																														
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	154	417	1	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2223325	2223325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	205	798	1	ENST00000326181.6:c.937G>A	p.Ala313Thr	p.A313T	ENST00000326181	NM_032271.2	313	Gcc/Acc																																																																														
PALB2	0	MSKCC	GRCh37	16	23632774	23632774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	131	524	1	ENST00000261584.4:c.3022C>T	p.Pro1008Ser	p.P1008S	ENST00000261584	NM_024675.3	1008	Ccc/Tcc																																																																														
CYLD	0	MSKCC	GRCh37	16	50783665	50783665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	185	620	0	ENST00000398568.2:c.56G>A	p.Arg19Gln	p.R19Q	ENST00000398568	NM_001042412.1	19	cGg/cAg																																																																														
NUP93	0	MSKCC	GRCh37	16	56855488	56855488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	101	373	0	ENST00000308159.5:c.637G>A	p.Ala213Thr	p.A213T	ENST00000308159	NM_014669.4	213	Gca/Aca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821875	72821875	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	106	399	1	ENST00000268489.5:c.10300del	p.Leu3434SerfsTer51	p.L3434Sfs*51	ENST00000268489	NM_006885.3	3434	Ctc/tc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822480	72822480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	209	816	4	ENST00000268489.5:c.9695G>A	p.Arg3232His	p.R3232H	ENST00000268489	NM_006885.3	3232	cGc/cAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72923807	72923807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	148	582	0	ENST00000268489.5:c.3271G>A	p.Val1091Ile	p.V1091I	ENST00000268489	NM_006885.3	1091	Gtt/Att																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350121	89350122	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	214	740	0	ENST00000301030.4:c.2828_2829del	p.Glu943ValfsTer74	p.E943Vfs*74	ENST00000301030	NM_001256183.1	943	gAG/g																																																																														
FANCA	0	MSKCC	GRCh37	16	89831345	89831346	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	195	646	5	ENST00000389301.3:c.2730_2731del	p.Trp911AspfsTer31	p.W911Dfs*31	ENST00000389301	NM_000135.2	910	ctCTgg/ctgg																																																																														
GPS2	0	MSKCC	GRCh37	17	7217286	7217286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	182	611	0	ENST00000380728.2:c.419G>A	p.Arg140His	p.R140H	ENST00000380728		140	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	244	724	0	ENST00000269305.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000269305	NM_001126112.2	196	cGa/cAa																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7982817	7982817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	212	773	3	ENST00000319144.4:c.968G>A	p.Gly323Asp	p.G323D	ENST00000319144	NM_001139.2	323	gGc/gAc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	15968279	15968279	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	97	353	0	ENST00000268712.3:c.5006del	p.Gly1669GlufsTer93	p.G1669Efs*93	ENST00000268712	NM_006311.3	1669	gGa/ga																																																																														
CDK12	0	MSKCC	GRCh37	17	37618380	37618380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	110	442	0	ENST00000447079.4:c.56G>A	p.Gly19Glu	p.G19E	ENST00000447079	NM_015083.1	19	gGa/gAa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881426	37881426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	219	689	0	ENST00000269571.5:c.2618A>G	p.Asp873Gly	p.D873G	ENST00000269571		873	gAc/gGc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37884218	37884218	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	180	606	0	ENST00000269571.5:c.3694delG	p.Ala1232LeufsTer70	p.A1232Lfs*70	ENST00000269571		1230	cGg/cg																																																																														
RARA	0	MSKCC	GRCh37	17	38510589	38510589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	181	634	0	ENST00000254066.5:c.843G>T	p.Gln281His	p.Q281H	ENST00000254066	NM_000964.3	281	caG/caT																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	119	634	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
MSI2	0	MSKCC	GRCh37	17	55693388	55693388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	138	702	0	ENST00000284073.2:c.595C>T	p.Arg199Trp	p.R199W	ENST00000284073	NM_138962.2	199	Cgg/Tgg																																																																														
RNF43	0	MSKCC	GRCh37	17	56439912	56439912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	203	639	0	ENST00000407977.2:c.680G>A	p.Ser227Asn	p.S227N	ENST00000407977		227	aGc/aAc																																																																														
RNF43	0	MSKCC	GRCh37	17	56448280	56448280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	42	584	1	ENST00000407977.2:c.367G>A	p.Ala123Thr	p.A123T	ENST00000407977		123	Gct/Act																																																																														
RAD51C	0	MSKCC	GRCh37	17	56770008	56770008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	108	388	0	ENST00000337432.4:c.4C>T	p.Arg2Cys	p.R2C	ENST00000337432	NM_058216.2	2	Cgc/Tgc																																																																														
CD79B	0	MSKCC	GRCh37	17	62007656	62007656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	165	533	1	ENST00000392795.3:c.211G>A	p.Ala71Thr	p.A71T	ENST00000392795	NM_001039933.1	71	Gcc/Acc																																																																														
BCL2	0	MSKCC	GRCh37	18	60985400	60985400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	194	632	3	ENST00000333681.4:c.500C>T	p.Ser167Leu	p.S167L	ENST00000333681		167	tCg/tTg																																																																														
TCF3	0	MSKCC	GRCh37	19	1615691	1615691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141432924		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	186	750	1	ENST00000344749.5:c.1580G>A	p.Arg527Gln	p.R527Q	ENST00000344749	NM_001136139.2	527	cGg/cAg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226767	2226767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	163	546	0	ENST00000398665.3:c.4247G>A	p.Arg1416His	p.R1416H	ENST00000398665	NM_032482.2	1416	cGc/cAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	187	676	0	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11134269	11134269	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	205	645	0	ENST00000344626.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000344626	NM_003072.3	979	Cga/Tga																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14626865	14626865	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	243	718	0	ENST00000254322.2:c.910del	p.Leu304SerfsTer17	p.L304Sfs*17	ENST00000254322	NM_006145.1	304	Ctc/tc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15311604	15311605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	11	128	0	ENST00000263388.2:c.112dup	p.Ala38GlyfsTer37	p.A38Gfs*37	ENST00000263388	NM_000435.2	38	gct/gGct																																																																														
UPF1	0	MSKCC	GRCh37	19	18965830	18965830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	166	575	0	ENST00000262803.5:c.1408G>A	p.Asp470Asn	p.D470N	ENST00000262803	NM_002911.3	470	Gac/Aac																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257366	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	229	721	2	ENST00000162023.5:c.767delC	p.Pro256GlnfsTer?	p.P256Qfs*?	ENST00000162023		256	cCa/ca																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	190	810	4	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213516	36213516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	231	933	2	ENST00000222270.7:c.2618G>A	p.Arg873His	p.R873H	ENST00000222270	NM_014727.1	873	cGt/cAt																																																																														
ERF	0	MSKCC	GRCh37	19	42752723	42752723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	198	741	1	ENST00000222329.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000222329	NM_006494.2	514	cGt/cAt																																																																														
CIC	0	MSKCC	GRCh37	19	42798840	42798840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	255	772	1	ENST00000575354.2:c.4412G>A	p.Arg1471Gln	p.R1471Q	ENST00000575354	NM_015125.3	1471	cGg/cAg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	78	658	4	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
POLD1	0	MSKCC	GRCh37	19	50919882	50919882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	195	663	0	ENST00000440232.2:c.2969G>A	p.Arg990His	p.R990H	ENST00000440232	NM_002691.3	990	cGc/cAc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52719794	52719794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	175	607	0	ENST00000322088.6:c.1006G>A	p.Asp336Asn	p.D336N	ENST00000322088	NM_014225.5	336	Gat/Aat																																																																														
MYCN	0	MSKCC	GRCh37	2	16085894	16085894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	177	601	0	ENST00000281043.3:c.1070G>A	p.Arg357His	p.R357H	ENST00000281043	NM_005378.4	357	cGt/cAt																																																																														
EPAS1	0	MSKCC	GRCh37	2	46596970	46596970	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	40	431	0	ENST00000263734.3:c.784A>G	p.Thr262Ala	p.T262A	ENST00000263734	NM_001430.4	262	Aca/Gca																																																																														
MSH2	0	MSKCC	GRCh37	2	47702384	47702385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	118	367	0	ENST00000233146.2:c.1983dup	p.Gln662ThrfsTer14	p.Q662Tfs*14	ENST00000233146	NM_000251.2	660	-/A																																																																														
TMEM127	0	MSKCC	GRCh37	2	96920573	96920573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	130	386	0	ENST00000258439.3:c.407C>T	p.Thr136Met	p.T136M	ENST00000258439	NM_001193304.2	136	aCg/aTg																																																																														
CUL3	0	MSKCC	GRCh37	2	225376085	225376085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	141	495	1	ENST00000264414.4:c.869del	p.Asn290MetfsTer21	p.N290Mfs*21	ENST00000264414	NM_003590.4	290	aAt/at																																																																														
IRS1	0	MSKCC	GRCh37	2	227661338	227661338	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	58	689	0	ENST00000305123.5:c.2117A>G	p.His706Arg	p.H706R	ENST00000305123	NM_005544.2	706	cAc/cGc																																																																														
IRS1	0	MSKCC	GRCh37	2	227661604	227661605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	190	635	0	ENST00000305123.5:c.1850dup	p.Gly618ArgfsTer57	p.G618Rfs*57	ENST00000305123	NM_005544.2	617	cca/ccCa																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	198	757	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024381	31024381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	259	632	1	ENST00000375687.4:c.3866G>A	p.Arg1289Gln	p.R1289Q	ENST00000375687	NM_015338.5	1289	cGg/cAg																																																																														
AURKA	0	MSKCC	GRCh37	20	54945543	54945543	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	245	834	1	ENST00000312783.6:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000312783	NM_198436.1	343	Cgg/Tgg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	17	486	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
RAF1	0	MSKCC	GRCh37	3	12629093	12629093	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	124	375	0	ENST00000251849.4:c.1414A>C	p.Asn472His	p.N472H	ENST00000251849	NM_002880.3	472	Aac/Cac																																																																														
SETD2	0	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	37	422	0	ENST00000409792.3:c.843delA	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa																																																																														
MST1	0	MSKCC	GRCh37	3	49723510	49723510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	30	72	0	ENST00000449682.2:c.1132G>A	p.Asp378Asn	p.D378N	ENST00000449682	NM_020998.3	378	Gac/Aac																																																																														
BAP1	0	MSKCC	GRCh37	3	52437456	52437456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	54	610	0	ENST00000460680.1:c.1705G>A	p.Val569Met	p.V569M	ENST00000460680	NM_004656.3	569	Gtg/Atg																																																																														
BAP1	0	MSKCC	GRCh37	3	52442054	52442054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	181	627	0	ENST00000460680.1:c.295G>A	p.Val99Met	p.V99M	ENST00000460680	NM_004656.3	99	Gtg/Atg																																																																														
GATA2	0	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	77	797	1	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880957	134880957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770406411		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	161	539	0	ENST00000398015.3:c.1520G>A	p.Arg507His	p.R507H	ENST00000398015	NM_004441.4	507	cGt/cAt																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138413709	138413709	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs199713806		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	184	513	0	ENST00000289153.2:c.1811G>C	p.Arg604Pro	p.R604P	ENST00000289153	NM_006219.2	604	cGg/cCg																																																																														
ATR	545	MSKCC	GRCh37	3	142261555	142261555	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	153	490	3	ENST00000350721.4:c.3402del	p.Phe1134LeufsTer6	p.F1134Lfs*6	ENST00000350721	NM_001184.3	1134	ttT/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	136	466	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185183614	185183614	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	145	442	0	ENST00000265026.3:c.1468A>G	p.Met490Val	p.M490V	ENST00000265026	NM_004721.4	490	Atg/Gtg																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	64	785	1	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535427	66535427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1472517358		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	129	346	0	ENST00000273854.3:c.34C>T	p.Arg12Trp	p.R12W	ENST00000273854	NM_004439.5	12	Cgg/Tgg																																																																														
TET2	0	MSKCC	GRCh37	4	106156204	106156204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150072691		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	126	403	0	ENST00000380013.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000380013	NM_001127208.2	369	Cgg/Tgg																																																																														
TERT	0	MSKCC	GRCh37	5	1293440	1293440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	171	592	0	ENST00000310581.5:c.1561C>T	p.Arg521Cys	p.R521C	ENST00000310581	NM_198253.2	521	Cgc/Tgc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38960057	38960057	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	25	277	0	ENST00000357387.3:c.1875T>A	p.Asp625Glu	p.D625E	ENST00000357387	NM_152756.3	625	gaT/gaA																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155540	56155540	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	123	401	0	ENST00000399503.3:c.634-2A>G		p.X212_splice	ENST00000399503	NM_005921.1	212																																																																															
PLK2	0	MSKCC	GRCh37	5	57753012	57753013	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	128	428	0	ENST00000274289.3:c.1003_1004del	p.Leu335AlafsTer11	p.L335Afs*11	ENST00000274289	NM_006622.3	335	TTg/g																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	257	649	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	0	MSKCC	GRCh37	5	112170747	112170747	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	181	558	2	ENST00000257430.4:c.1847delT	p.Leu616TrpfsTer14	p.L616Wfs*14	ENST00000257430	NM_000038.5	615	Ttt/tt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	86	383	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
RAD50	0	MSKCC	GRCh37	5	131977896	131977896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	164	428	1	ENST00000265335.6:c.3779G>A	p.Arg1260His	p.R1260H	ENST00000265335		1260	cGt/cAt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520184	176520184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	74	814	1	ENST00000292408.4:c.1103C>T	p.Thr368Met	p.T368M	ENST00000292408	NM_213647.1	368	aCg/aTg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	46	339	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
FLT4	0	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	199	649	4	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056503	26056503	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs141424312		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	75	259	0	ENST00000343677.2:c.154A>G	p.Lys52Glu	p.K52E	ENST00000343677	NM_005319.3	52	Aaa/Gaa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163246	32163246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	81	957	0	ENST00000375023.3:c.5980C>T	p.Pro1994Ser	p.P1994S	ENST00000375023	NM_004557.3	1994	Ccc/Tcc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32191695	32191695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	150	682	0	ENST00000375023.3:c.11del	p.Pro4LeufsTer39	p.P4Lfs*39	ENST00000375023	NM_004557.3	4	cCt/ct																																																																														
ROS1	0	MSKCC	GRCh37	6	117679148	117679148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	42	386	0	ENST00000368508.3:c.3673G>A	p.Asp1225Asn	p.D1225N	ENST00000368508	NM_002944.2	1225	Gat/Aat																																																																														
ROS1	0	MSKCC	GRCh37	6	117714467	117714468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	37	364	0	ENST00000368508.3:c.1181dup	p.Leu394PhefsTer16	p.L394Ffs*16	ENST00000368508	NM_002944.2	394	tta/ttTa																																																																														
LATS1	0	MSKCC	GRCh37	6	149997780	149997780	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148506316		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	191	520	0	ENST00000253339.5:c.2687G>A	p.Arg896Gln	p.R896Q	ENST00000253339		896	cGg/cAg																																																																														
ESR1	0	MSKCC	GRCh37	6	152129241	152129241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	210	678	1	ENST00000206249.3:c.194C>T	p.Ala65Val	p.A65V	ENST00000206249	NM_000125.3	65	gCg/gTg																																																																														
CARD11	0	MSKCC	GRCh37	7	2962930	2962930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	474	885	1	ENST00000396946.4:c.1978C>T	p.Arg660Trp	p.R660W	ENST00000396946	NM_032415.4	660	Cgg/Tgg																																																																														
CARD11	0	MSKCC	GRCh37	7	2978405	2978405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	460	723	2	ENST00000396946.4:c.925C>T	p.Arg309Cys	p.R309C	ENST00000396946	NM_032415.4	309	Cgc/Tgc																																																																														
ETV1	0	MSKCC	GRCh37	7	13949275	13949275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	27	373	0	ENST00000405192.2:c.853G>A	p.Val285Ile	p.V285I	ENST00000405192	NM_001163147.1	285	Gtc/Atc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	203	334	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
EGFR	0	MSKCC	GRCh37	7	55214316	55214316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	217	609	0	ENST00000275493.2:c.442G>A	p.Val148Met	p.V148M	ENST00000275493	NM_005228.3	148	Gtg/Atg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151917611	151917611	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	318	629	0	ENST00000262189.6:c.3709C>T	p.Arg1237Ter	p.R1237*	ENST00000262189	NM_170606.2	1237	Cga/Tga																																																																														
RAD21	0	MSKCC	GRCh37	8	117859878	117859878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	119	316	0	ENST00000297338.2:c.1757G>A	p.Arg586Gln	p.R586Q	ENST00000297338	NM_006265.2	586	cGa/cAa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740573	145740573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	157	720	0	ENST00000428558.2:c.1444C>T	p.Arg482Cys	p.R482C	ENST00000428558	NM_004260.3	482	Cgc/Tgc																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5549526	5549526	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	250	833	1	ENST00000397747.3:c.557del	p.Pro186LeufsTer14	p.P186Lfs*14	ENST00000397747	NM_025239.3	185	Ccc/cc																																																																														
TEK	7010	MSKCC	GRCh37	9	27158026	27158026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	203	673	1	ENST00000380036.4:c.255del	p.Val86LeufsTer31	p.V86Lfs*31	ENST00000380036	NM_000459.3	84	Aaa/aa																																																																														
TEK	0	MSKCC	GRCh37	9	27169625	27169625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	174	609	0	ENST00000380036.4:c.626G>A	p.Arg209Gln	p.R209Q	ENST00000380036	NM_000459.3	209	cGg/cAg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	147	597	3	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98215833	98215833	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147025073		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	183	616	1	ENST00000331920.6:c.3376G>A	p.Val1126Ile	p.V1126I	ENST00000331920	NM_000264.3	1126	Gtc/Atc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900239	101900239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	140	388	0	ENST00000374994.4:c.673C>T	p.Arg225Trp	p.R225W	ENST00000374994	NM_004612.2	225	Cgg/Tgg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412735	139412735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	46	641	0	ENST00000277541.6:c.1109G>A	p.Cys370Tyr	p.C370Y	ENST00000277541	NM_017617.3	370	tGc/tAc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	203	643	4	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
RBM10	0	MSKCC	GRCh37	X	47039312	47039312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	95	388	0	ENST00000329236.7:c.704C>A	p.Thr235Asn	p.T235N	ENST00000329236	NM_001204466.1	235	aCc/aAc																																																																														
AMER1	0	MSKCC	GRCh37	X	63410960	63410960	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	193	345	0	ENST00000330258.3:c.2207del	p.Asn736IlefsTer32	p.N736Ifs*32	ENST00000330258	NM_152424.3	736	aAt/at																																																																														
AMER1	0	MSKCC	GRCh37	X	63413070	63413070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	249	351	1	ENST00000330258.3:c.97G>A	p.Ala33Thr	p.A33T	ENST00000330258	NM_152424.3	33	Gca/Aca																																																																														
AR	0	MSKCC	GRCh37	X	66765820	66765820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	295	426	0	ENST00000374690.3:c.832G>A	p.Ala278Thr	p.A278T	ENST00000374690	NM_000044.3	278	Gct/Act																																																																														
NCOA3	0	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	67	596	0	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																																																														
PARP1	0	MSKCC	GRCh37	1	226570840	226570841	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	C			P-0028266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	156	543	0	ENST00000366794.5:c.1055_1056delinsG	p.Lys352SerfsTer29	p.K352Sfs*29	ENST00000366794	NM_001618.3	352	aAA/aG																																																																														
ATM	0	MSKCC	GRCh37	11	108200963	108200963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	44	404	0	ENST00000278616.4:c.7330G>A	p.Glu2444Lys	p.E2444K	ENST00000278616	NM_000051.3	2444	Gag/Aag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49437565	49437565	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	1847	549	0	ENST00000301067.7:c.5320G>C	p.Glu1774Gln	p.E1774Q	ENST00000301067	NM_003482.3	1774	Gaa/Caa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49437706	49437723	+	inframe_deletion	In_Frame_Del	DEL	TGTTGCTTCTTCTTCTCA	TGTTGCTTCTTCTTCTCA	-			P-0028361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1348	2041	694	0	ENST00000301067.7:c.5247_5264del	p.Asp1749_Gln1755delinsGlu	p.D1749_Q1755delinsE	ENST00000301067	NM_003482.3	1749	gaTGAGAAGAAGAAGCAACAg/gag																																																																														
PLCG2	0	MSKCC	GRCh37	16	81941304	81941304	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	86	647	0	ENST00000359376.3:c.1482C>G	p.His494Gln	p.H494Q	ENST00000359376	NM_002661.3	494	caC/caG																																																																														
NCOR1	0	MSKCC	GRCh37	17	15943741	15944309	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTTTCAATCTTACCTGACGTAGTAACTGCTGGCAGATTAAAGATCTCAGTTCCTGGCTGAGCAGCTGCTATATTTAAGCAAACATTCAAGTTAATTAAGATGTGATAATCATATATACCAAACTAAAGTCTCAAAAAATTCCTATAATAAAATTAATCTTTTTATTTTTCATGATCTCAACCTTTATTTCTCACCCATTAAGTGAAGATAAAATGGAAGTATTTTTTTTTTTTGAGACAGGGTCTCACTCTGTTGCCCAGGCTATTTTTAAAGGGAAATCAGGAAATAGGTAAGGTAGGAACATCAAAAGAAGAGCAATAAGCTGTGTGCAGTGGTGCACTCCTAGTCCCCCAGCTACTCAGCAGGCTGAGGCGGTAGGACTGCTTGAGCATAGGAATTTGAGGCCAGCCTGGGCAACACAGTGAGACTCTCCCATCTGTTTACCAAAAATAAATAAATAAATAAAAAAAGAAGCAGTGTAACCCAGAAAAGGGAAAGGAACTTTGCACTGCTGGAGAAAAACAAATAGGAAAATGCTGTTCTCAGAACAGGAACCAAGGCTTTCTGA	CTTTTCAATCTTACCTGACGTAGTAACTGCTGGCAGATTAAAGATCTCAGTTCCTGGCTGAGCAGCTGCTATATTTAAGCAAACATTCAAGTTAATTAAGATGTGATAATCATATATACCAAACTAAAGTCTCAAAAAATTCCTATAATAAAATTAATCTTTTTATTTTTCATGATCTCAACCTTTATTTCTCACCCATTAAGTGAAGATAAAATGGAAGTATTTTTTTTTTTTGAGACAGGGTCTCACTCTGTTGCCCAGGCTATTTTTAAAGGGAAATCAGGAAATAGGTAAGGTAGGAACATCAAAAGAAGAGCAATAAGCTGTGTGCAGTGGTGCACTCCTAGTCCCCCAGCTACTCAGCAGGCTGAGGCGGTAGGACTGCTTGAGCATAGGAATTTGAGGCCAGCCTGGGCAACACAGTGAGACTCTCCCATCTGTTTACCAAAAATAAATAAATAAATAAAAAAAGAAGCAGTGTAACCCAGAAAAGGGAAAGGAACTTTGCACTGCTGGAGAAAAACAAATAGGAAAATGCTGTTCTCAGAACAGGAACCAAGGCTTTCTGA	-			P-0028420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	28	403	0	ENST00000268712.3:c.6680-501_6733+14del		p.X2227_splice	ENST00000268712	NM_006311.3	2227																																																																															
APC	0	MSKCC	GRCh37	5	112177398	112177734	+	frameshift_variant	Frame_Shift_Del	DEL	ATGACCTGTTGCAGGAATGTATAAGCTCCGCAATGCCAAAAAAGAAAAAGCCTTCAAGACTCAAGGGTGATAATGAAAAACATAGTCCCAGAAATATGGGTGGCATATTAGGTGAAGATCTGACACTTGATTTGAAAGATATACAGAGACCAGATTCAGAACATGGTCTATCCCCTGATTCAGAAAATTTTGATTGGAAAGCTATTCAGGAAGGTGCAAATTCCATAGTAAGTAGTTTACATCAAGCTGCTGCTGCTGCATGTTTATCTAGACAAGCTTCGTCTGATTCAGATTCCATCCTTTCCCTGAAATCAGGAATCTCTCTGGGATCACCATT	ATGACCTGTTGCAGGAATGTATAAGCTCCGCAATGCCAAAAAAGAAAAAGCCTTCAAGACTCAAGGGTGATAATGAAAAACATAGTCCCAGAAATATGGGTGGCATATTAGGTGAAGATCTGACACTTGATTTGAAAGATATACAGAGACCAGATTCAGAACATGGTCTATCCCCTGATTCAGAAAATTTTGATTGGAAAGCTATTCAGGAAGGTGCAAATTCCATAGTAAGTAGTTTACATCAAGCTGCTGCTGCTGCATGTTTATCTAGACAAGCTTCGTCTGATTCAGATTCCATCCTTTCCCTGAAATCAGGAATCTCTCTGGGATCACCATT	-			P-0028420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	113	337	0	ENST00000257430.4:c.6107_6443del	p.Asp2036ValfsTer21	p.D2036Vfs*21	ENST00000257430	NM_000038.5	2036	gATGACCTGTTGCAGGAATGTATAAGCTCCGCAATGCCAAAAAAGAAAAAGCCTTCAAGACTCAAGGGTGATAATGAAAAACATAGTCCCAGAAATATGGGTGGCATATTAGGTGAAGATCTGACACTTGATTTGAAAGATATACAGAGACCAGATTCAGAACATGGTCTATCCCCTGATTCAGAAAATTTTGATTGGAAAGCTATTCAGGAAGGTGCAAATTCCATAGTAAGTAGTTTACATCAAGCTGCTGCTGCTGCATGTTTATCTAGACAAGCTTCGTCTGATTCAGATTCCATCCTTTCCCTGAAATCAGGAATCTCTCTGGGATCACCATTt/gt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416526	49416526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	324	670	0	ENST00000301067.7:c.16185G>A	p.Trp5395Ter	p.W5395*	ENST00000301067	NM_003482.3	5395	tgG/tgA																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885939	111885939	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			628	267	600	2	ENST00000341259.2:c.1561C>A	p.Pro521Thr	p.P521T	ENST00000341259	NM_005475.2	521	Ccc/Acc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	589	596	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553441	106553441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	174	355	0	ENST00000369096.4:c.1406C>T	p.Ser469Leu	p.S469L	ENST00000369096	NM_001198.3	469	tCg/tTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028486-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	149	598	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028486-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			647	139	547	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028486-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	136	536	0	ENST00000269305.4:c.568C>G	p.Pro190Ala	p.P190A	ENST00000269305	NM_001126112.2	190	Cct/Gct																																																																														
FYN	0	MSKCC	GRCh37	6	112017604	112017604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028486-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	79	590	0	ENST00000368678.4:c.909G>T	p.Met303Ile	p.M303I	ENST00000368678		303	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	46	525	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	45	633	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FAT1	0	MSKCC	GRCh37	4	187542810	187542810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	22	511	0	ENST00000441802.2:c.4930A>G	p.Ser1644Gly	p.S1644G	ENST00000441802	NM_005245.3	1644	Agt/Ggt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	17	511	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	63	585	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																														
NEGR1	0	MSKCC	GRCh37	1	72400905	72400905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	13	490	0	ENST00000357731.5:c.266C>A	p.Pro89His	p.P89H	ENST00000357731	NM_173808.2	89	cCt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	27	786	0	ENST00000269305.4:c.377A>C	p.Tyr126Ser	p.Y126S	ENST00000269305	NM_001126112.2	126	tAc/tCc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45796215	45796215	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	23	624	0	ENST00000372115.3:c.1449T>G	p.Tyr483Ter	p.Y483*	ENST00000372115	NM_001048171.1	483	taT/taG																																																																														
CD276	0	MSKCC	GRCh37	15	73994738	73994738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	33	830	0	ENST00000318443.5:c.222G>C	p.Gln74His	p.Q74H	ENST00000318443	NM_001024736.1	74	caG/caC																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827504	72827504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	41	665	0	ENST00000268489.5:c.9077G>T	p.Cys3026Phe	p.C3026F	ENST00000268489	NM_006885.3	3026	tGc/tTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36218440	36218440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	29	495	0	ENST00000222270.7:c.4219G>C	p.Gly1407Arg	p.G1407R	ENST00000222270	NM_014727.1	1407	Ggg/Cgg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71096153	71096153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	72	426	0	ENST00000318789.4:c.604C>G	p.Gln202Glu	p.Q202E	ENST00000318789	NM_032682.5	202	Caa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	610	657	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	819	603	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857692	9857692	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1389208302		P-0028515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	153	401	0	ENST00000330684.3:c.3709G>A	p.Asp1237Asn	p.D1237N	ENST00000330684	NM_001134407.1	1237	Gat/Aat																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060782	38060784	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0028515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1399	369	980	0	ENST00000250448.2:c.1205_1207del	p.Ile402del	p.I402del	ENST00000250448	NM_004496.3	402	aTCAac/aac																																																																														
PTEN	0	MSKCC	GRCh37	10	89692892	89692892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	472	403	0	ENST00000371953.3:c.376G>C	p.Ala126Pro	p.A126P	ENST00000371953	NM_000314.4	126	Gct/Cct																																																																														
MSH3	0	MSKCC	GRCh37	5	80024744	80024744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	217	597	0	ENST00000265081.6:c.1528C>T	p.Leu510Phe	p.L510F	ENST00000265081	NM_002439.4	510	Ctc/Ttc																																																																														
BCOR	0	MSKCC	GRCh37	X	39931682	39931682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1275	259	713	1	ENST00000378444.4:c.2917G>A	p.Val973Met	p.V973M	ENST00000378444	NM_001123385.1	973	Gtg/Atg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054986	176054986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	63	623	0	ENST00000367669.3:c.1067G>T	p.Arg356Ile	p.R356I	ENST00000367669	NM_022457.5	356	aGa/aTa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	103	493	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
MGA	0	MSKCC	GRCh37	15	42002898	42002898	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	25	334	0	ENST00000219905.7:c.2435C>A	p.Ser812Ter	p.S812*	ENST00000219905	NM_001164273.1	812	tCa/tAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	73	620	0	ENST00000269305.4:c.470T>A	p.Val157Asp	p.V157D	ENST00000269305	NM_001126112.2	157	gTc/gAc																																																																														
TCF3	0	MSKCC	GRCh37	19	1625652	1625652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	42	657	0	ENST00000344749.5:c.422C>T	p.Ser141Leu	p.S141L	ENST00000344749	NM_001136139.2	141	tCg/tTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15290061	15290061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	60	690	0	ENST00000263388.2:c.3493G>A	p.Gly1165Ser	p.G1165S	ENST00000263388	NM_000435.2	1165	Ggc/Agc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212483976	212483976	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	38	480	0	ENST00000342788.4:c.2227A>T	p.Thr743Ser	p.T743S	ENST00000342788	NM_005235.2	743	Act/Tct																																																																														
EPHB1	0	MSKCC	GRCh37	3	134968311	134968311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	94	537	1	ENST00000398015.3:c.2824C>A	p.Leu942Met	p.L942M	ENST00000398015	NM_004441.4	942	Ctg/Atg																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138196847	138196847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	47	352	0	ENST00000237289.4:c.509A>G	p.Asn170Ser	p.N170S	ENST00000237289	NM_001270507.1	170	aAt/aGt																																																																														
RBM10	0	MSKCC	GRCh37	X	47039709	47039709	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0028520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	23	250	1	ENST00000329236.7:c.926+1G>T		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																															
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	14	239	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	42	384	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	15	385	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	61	443	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	0	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	69	242	0	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa																																																																														
CARD11	0	MSKCC	GRCh37	7	2953040	2953040	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141751925		P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	63	521	2	ENST00000396946.4:c.2900G>A	p.Arg967His	p.R967H	ENST00000396946	NM_032415.4	967	cGc/cAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244163	5244163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	39	466	2	ENST00000357368.4:c.1319C>T	p.Ala440Val	p.A440V	ENST00000357368	NM_002850.3	440	gCg/gTg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462971	120462971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	55	407	0	ENST00000256646.2:c.5360G>A	p.Arg1787Gln	p.R1787Q	ENST00000256646	NM_024408.3	1787	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	218	531	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
BAP1	0	MSKCC	GRCh37	3	52441246	52441246	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	367	486	0	ENST00000460680.1:c.524C>G	p.Pro175Arg	p.P175R	ENST00000460680	NM_004656.3	175	cCt/cGt																																																																														
AKT3	0	MSKCC	GRCh37	1	243777010	243777010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200428825		P-0028531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	90	496	0	ENST00000263826.5:c.659G>A	p.Arg220His	p.R220H	ENST00000263826	NM_005465.4	220	cGt/cAt																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	90	538	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0028531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	91	478	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
ERRFI1	0	MSKCC	GRCh37	1	8075564	8075564	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	93	450	0	ENST00000377482.5:c.116A>T	p.Glu39Val	p.E39V	ENST00000377482	NM_018948.3	39	gAg/gTg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603041	48603041	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	71	369	0	ENST00000342988.3:c.1342del	p.Gln448SerfsTer28	p.Q448Sfs*28	ENST00000342988	NM_005359.5	448	Cag/ag																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459741	149459743	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0028531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	82	568	0	ENST00000286301.3:c.464_466del	p.Ser155del	p.S155del	ENST00000286301	NM_005211.3	155	tCCTtc/ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	16	656	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	75	401	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168811	56168811	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	89	306	0	ENST00000399503.3:c.1667del	p.Leu556Ter	p.L556*	ENST00000399503	NM_005921.1	555	gaT/ga																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259258	36259259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	122	582	0	ENST00000300305.3:c.232dup	p.Met78AsnfsTer60	p.M78Nfs*60	ENST00000300305		78	atg/aAtg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168490	56168491	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	68	124	0	ENST00000399503.3:c.1447dupA	p.Arg483LysfsTer10	p.R483Kfs*10	ENST00000399503	NM_005921.1	482	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	108	525	2	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
RB1	0	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	77	318	0	ENST00000267163.4:c.1959delA	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18534753	18534753	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	47	400	0	ENST00000266497.5:c.1811C>G	p.Pro604Arg	p.P604R	ENST00000266497		604	cCc/cGc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472666	88472666	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	30	273	0	ENST00000360948.2:c.1890-1G>T		p.X630_splice	ENST00000360948	NM_001012338.2	630																																																																															
POLD1	0	MSKCC	GRCh37	19	50912062	50912062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	50	708	0	ENST00000440232.2:c.1796C>T	p.Ala599Val	p.A599V	ENST00000440232	NM_002691.3	599	gCc/gTc																																																																														
PMS1	0	MSKCC	GRCh37	2	190717454	190717454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	27	348	0	ENST00000441310.2:c.773G>A	p.Ser258Asn	p.S258N	ENST00000441310	NM_000534.4	258	aGt/aAt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528823	157528823	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	43	514	0	ENST00000346085.5:c.6548A>G	p.Gln2183Arg	p.Q2183R	ENST00000346085	NM_020732.3	2183	cAg/cGg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98239843	98239843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	64	582	0	ENST00000331920.6:c.1489G>T	p.Ala497Ser	p.A497S	ENST00000331920	NM_000264.3	497	Gct/Tct																																																																														
KDM6A	0	MSKCC	GRCh37	X	44937697	44937697	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	73	277	0	ENST00000377967.4:c.2885A>T	p.Asn962Ile	p.N962I	ENST00000377967	NM_021140.2	962	aAt/aTt																																																																														
SHOC2	0	MSKCC	GRCh37	10	112771545	112771545	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	115	467	1	ENST00000369452.4:c.1718A>T	p.Lys573Met	p.K573M	ENST00000369452	NM_007373.3	573	aAg/aTg																																																																														
ALK	0	MSKCC	GRCh37	2	29443679	29443679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	149	619	0	ENST00000389048.3:c.3538G>C	p.Val1180Leu	p.V1180L	ENST00000389048	NM_004304.4	1180	Gtt/Ctt																																																																														
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	27	663	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0028543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	39	467	0	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	132	411	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	237	551	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	186	228	0	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	164	468	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
CARD11	0	MSKCC	GRCh37	7	2984085	2984085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	145	407	0	ENST00000396946.4:c.445C>T	p.Arg149Cys	p.R149C	ENST00000396946	NM_032415.4	149	Cgc/Tgc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71050193	71050195	+	frameshift_variant	Frame_Shift_Del	DEL	TGC	TGC	GA			P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	127	299	0	ENST00000318789.4:c.990_992delinsTC	p.Glu330AspfsTer22	p.E330Dfs*22	ENST00000318789	NM_032682.5	330	gaGCAt/gaTCt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526886	31526886	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	267	741	0	ENST00000344624.3:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000344624		52	Caa/Taa																																																																														
PARK2	0	MSKCC	GRCh37	6	162864459	162864459	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	180	464	0	ENST00000366898.1:c.54T>A	p.Asp18Glu	p.D18E	ENST00000366898	NM_004562.2	18	gaT/gaA																																																																														
KRAS	0	MSKCC	GRCh37	12	25380238	25380238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	142	606	0	ENST00000256078.4:c.220A>G	p.Thr74Ala	p.T74A	ENST00000256078	NM_033360.2	74	Act/Gct																																																																														
KMT2A	0	MSKCC	GRCh37	11	118363842	118363846	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAT	CTGAT	-			P-0028548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	283	609	0	ENST00000534358.1:c.5076_5080del	p.Asp1693ThrfsTer5	p.D1693Tfs*5	ENST00000534358	NM_005933.3	1692	cCTGAT/c																																																																														
MSH3	0	MSKCC	GRCh37	5	80071555	80071555	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	226	250	0	ENST00000265081.6:c.2296A>G	p.Thr766Ala	p.T766A	ENST00000265081	NM_002439.4	766	Act/Gct																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508685	106508685	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	272	594	0	ENST00000359195.3:c.679A>T	p.Ser227Cys	p.S227C	ENST00000359195	NM_002649.2	227	Agc/Tgc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146049	38146049	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	172	818	0	ENST00000317025.8:c.3457G>C	p.Glu1153Gln	p.E1153Q	ENST00000317025	NM_023034.1	1153	Gag/Cag																																																																														
BRAF	0	MSKCC	GRCh37	7	140481412	140481412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	200	544	0	ENST00000288602.6:c.1396G>A	p.Gly466Arg	p.G466R	ENST00000288602	NM_004333.4	466	Gga/Aga																																																																														
TP53	0	MSKCC	GRCh37	17	7578445	7578445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	306	879	1	ENST00000269305.4:c.485T>G	p.Ile162Ser	p.I162S	ENST00000269305	NM_001126112.2	162	aTc/aGc																																																																														
KIT	0	MSKCC	GRCh37	4	55593594	55593608	+	inframe_deletion	In_Frame_Del	DEL	GAAGTACAGTGGAAG	GAAGTACAGTGGAAG	-			P-0028553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	303	471	1	ENST00000288135.5:c.1661_1675del	p.Glu554_Lys558del	p.E554_K558del	ENST00000288135	NM_000222.2	554	GAAGTACAGTGGAAG/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	1061	432	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937184	36937184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	173	349	1	ENST00000361632.4:c.1135G>T	p.Gly379Cys	p.G379C	ENST00000361632		379	Ggc/Tgc																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439842	51439842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	97	309	0	ENST00000262662.1:c.407A>G	p.Lys136Arg	p.K136R	ENST00000262662		136	aAg/aGg																																																																														
NUF2	0	MSKCC	GRCh37	1	163317568	163317568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	150	347	0	ENST00000271452.3:c.964G>T	p.Asp322Tyr	p.D322Y	ENST00000271452	NM_145697.2	322	Gac/Tac																																																																														
STAT5A	0	MSKCC	GRCh37	17	40451799	40451799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	304	385	0	ENST00000345506.4:c.581C>G	p.Pro194Arg	p.P194R	ENST00000345506	NM_003152.3	194	cCc/cGc																																																																														
INHA	0	MSKCC	GRCh37	2	220439799	220439799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	301	274	1	ENST00000243786.2:c.652C>A	p.His218Asn	p.H218N	ENST00000243786	NM_002191.3	218	Cac/Aac																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41747862	41747862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	125	312	1	ENST00000226382.2:c.907G>A	p.Gly303Ser	p.G303S	ENST00000226382	NM_003924.3	303	Ggt/Agt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44937732	44937732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	243	454	0	ENST00000377967.4:c.2920G>T	p.Ala974Ser	p.A974S	ENST00000377967	NM_021140.2	974	Gct/Tct																																																																														
SPEN	0	MSKCC	GRCh37	1	16198985	16199354	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGAGGTGGAGCTTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAGAAATGAGAGTAATGTAATAATGCGATACAGATATTTTCCCCAGAGAGAAAAACGTTAAGTGTAAAAGAGAGCCATTTAAAAAGTCATTTTGCAGGTCGTCCCTCCTACATACATAACGCAAATTGTCCAAAAAAAATCTAAAAACTCATTTTGGAAAATTATTGATATGCAGCAATAACGTTGACTTTATTTTTTCCAGATATGGCCGCGTGGAAAGTGTCAAAATTCTTCCCAAGAGGGGAT	CTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGAGGTGGAGCTTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAGAAATGAGAGTAATGTAATAATGCGATACAGATATTTTCCCCAGAGAGAAAAACGTTAAGTGTAAAAGAGAGCCATTTAAAAAGTCATTTTGCAGGTCGTCCCTCCTACATACATAACGCAAATTGTCCAAAAAAAATCTAAAAACTCATTTTGGAAAATTATTGATATGCAGCAATAACGTTGACTTTATTTTTTCCAGATATGGCCGCGTGGAAAGTGTCAAAATTCTTCCCAAGAGGGGAT	-			P-0028567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	254	0	0	ENST00000375759.3:c.84-324_129del		p.X28_splice	ENST00000375759	NM_015001.2	28																																																																															
HIST3H3	0	MSKCC	GRCh37	1	228612813	228612813	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	227	665	0	ENST00000366696.1:c.214A>C	p.Met72Leu	p.M72L	ENST00000366696	NM_003493.2	72	Atg/Ctg																																																																														
MGA	0	MSKCC	GRCh37	15	42046765	42046765	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	48	599	0	ENST00000219905.7:c.7139C>T	p.Pro2380Leu	p.P2380L	ENST00000219905	NM_001164273.1	2380	cCg/cTg																																																																														
BARD1	0	MSKCC	GRCh37	2	215645284	215645284	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	115	435	0	ENST00000260947.4:c.1314G>C	p.Lys438Asn	p.K438N	ENST00000260947	NM_000465.2	438	aaG/aaC																																																																														
GATA2	0	MSKCC	GRCh37	3	128200748	128200748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	638	689	0	ENST00000341105.2:c.1057C>A	p.Gln353Lys	p.Q353K	ENST00000341105	NM_032638.4	353	Cag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32185016	32185016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	562	738	0	ENST00000375023.3:c.1652A>G	p.Asp551Gly	p.D551G	ENST00000375023	NM_004557.3	551	gAt/gGt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0028568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	283	457	1	ENST00000262367.5:c.3250dupA	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992187	72992187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	245	672	0	ENST00000268489.5:c.1858C>T	p.His620Tyr	p.H620Y	ENST00000268489	NM_006885.3	620	Cac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	364	677	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NF1	0	MSKCC	GRCh37	17	29528454	29528454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	363	524	0	ENST00000358273.4:c.1211C>G	p.Ser404Cys	p.S404C	ENST00000358273	NM_001042492.2	404	tCt/tGt																																																																														
NF1	0	MSKCC	GRCh37	17	29653263	29653263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	49	328	0	ENST00000358273.4:c.5261C>G	p.Ser1754Cys	p.S1754C	ENST00000358273	NM_001042492.2	1754	tCt/tGt																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111907661	111907662	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0028568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	412	462	0	ENST00000393256.3:c.438_439dup	p.Trp147TyrfsTer24	p.W147Yfs*24	ENST00000393256	NM_006538.4	145	-/AT																																																																														
SETD2	0	MSKCC	GRCh37	3	47164910	47164910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	284	299	0	ENST00000409792.3:c.1216C>G	p.His406Asp	p.H406D	ENST00000409792	NM_014159.6	406	Cac/Gac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396203	139396218	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCGCGGACATTGAC	GCCCGCGGACATTGAC	-			P-0028568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	440	628	0	ENST00000277541.6:c.5620_5635del	p.Val1874LeufsTer8	p.V1874Lfs*8	ENST00000277541	NM_017617.3	1874	GTCAATGTCCGCGGGCct/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	250	537	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	115	457	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	348	646	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
BTK	0	MSKCC	GRCh37	X	100608923	100608923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	107	325	4	ENST00000308731.7:c.1685G>A	p.Arg562Gln	p.R562Q	ENST00000308731	NM_000061.2	562	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	58	239	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	111	488	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713427	40713427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	53	611	4	ENST00000373198.4:c.4088G>A	p.Arg1363Gln	p.R1363Q	ENST00000373198	NM_133170.3	1363	cGg/cAg																																																																														
MYC	0	MSKCC	GRCh37	8	128752960	128752960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	149	515	0	ENST00000377970.2:c.1121A>G	p.His374Arg	p.H374R	ENST00000377970	NM_002467.4	374	cAc/cGc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	127	503	9	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
ARID2	0	MSKCC	GRCh37	12	46123833	46123833	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	91	292	1	ENST00000334344.6:c.102delT	p.Phe34LeufsTer24	p.F34Lfs*24	ENST00000334344	NM_152641.2	33	ccT/cc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021232	31021232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148964601		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	146	555	2	ENST00000375687.4:c.1231C>T	p.Arg411Cys	p.R411C	ENST00000375687	NM_015338.5	411	Cgc/Tgc																																																																														
IKBKE	0	MSKCC	GRCh37	1	206649544	206649544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	121	530	0	ENST00000367120.3:c.379C>T	p.Arg127Trp	p.R127W	ENST00000367120	NM_014002.3	127	Cgg/Tgg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25982386	25982386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	165	379	0	ENST00000435504.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000435504		302	Cga/Tga																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	302	687	4	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	57	774	1	ENST00000298229.2:c.2927dupC	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																														
ATR	545	MSKCC	GRCh37	3	142242899	142242899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750252420		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	180	601	0	ENST00000350721.4:c.4088C>T	p.Ala1363Val	p.A1363V	ENST00000350721	NM_001184.3	1363	gCg/gTg																																																																														
FLT4	0	MSKCC	GRCh37	5	180050958	180050958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	181	742	0	ENST00000261937.6:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000261937	NM_182925.4	509	Gag/Aag																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281344	49281344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202077345		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	409	799	2	ENST00000282018.3:c.391G>A	p.Val131Met	p.V131M	ENST00000282018	NM_020377.2	131	Gtg/Atg																																																																														
ROS1	0	MSKCC	GRCh37	6	117631343	117631343	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	104	429	0	ENST00000368508.3:c.6335del	p.Asn2112MetfsTer22	p.N2112Mfs*22	ENST00000368508	NM_002944.2	2112	aAt/at																																																																														
PTEN	0	MSKCC	GRCh37	10	89653803	89653803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	279	489	0	ENST00000371953.3:c.101C>T	p.Ala34Val	p.A34V	ENST00000371953	NM_000314.4	34	gCt/gTt																																																																														
SPEN	0	MSKCC	GRCh37	1	16255919	16255919	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	162	516	0	ENST00000375759.3:c.3184A>C	p.Ser1062Arg	p.S1062R	ENST00000375759	NM_015001.2	1062	Agc/Cgc																																																																														
SPEN	0	MSKCC	GRCh37	1	16256591	16256591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	76	586	1	ENST00000375759.3:c.3856G>A	p.Gly1286Arg	p.G1286R	ENST00000375759	NM_015001.2	1286	Ggg/Agg																																																																														
RIT1	0	MSKCC	GRCh37	1	155870250	155870251	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	149	659	0	ENST00000368323.3:c.588dup	p.Ser197IlefsTer2	p.S197Ifs*2	ENST00000368323	NM_006912.5	196	-/A																																																																														
CDC73	0	MSKCC	GRCh37	1	193219001	193219001	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	77	337	0	ENST00000367435.3:c.1559G>C	p.Arg520Thr	p.R520T	ENST00000367435	NM_024529.4	520	aGg/aCg																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982141	201982142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	175	717	1	ENST00000359651.3:c.666_667dup	p.Asp223ValfsTer32	p.D223Vfs*32	ENST00000359651		222	act/acTGt																																																																														
SH2B3	0	MSKCC	GRCh37	12	111855951	111855951	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	128	406	1	ENST00000341259.2:c.2T>C	p.Met1?	p.M1?	ENST00000341259	NM_005475.2	1	aTg/aCg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121437289	121437289	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	162	726	0	ENST00000257555.6:c.1627T>C	p.Phe543Leu	p.F543L	ENST00000257555		543	Ttc/Ctc																																																																														
FLT1	0	MSKCC	GRCh37	13	28913305	28913305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	129	565	0	ENST00000282397.4:c.2488G>T	p.Gly830Cys	p.G830C	ENST00000282397	NM_002019.4	830	Ggc/Tgc																																																																														
FLT1	0	MSKCC	GRCh37	13	29001372	29001372	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	104	456	0	ENST00000282397.4:c.1360T>C	p.Cys454Arg	p.C454R	ENST00000282397	NM_002019.4	454	Tgt/Cgt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41226539	41226539	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	109	458	0	ENST00000357654.3:c.4485-1G>T		p.X1495_splice	ENST00000357654	NM_007294.3	1495																																																																															
PIK3R2	0	MSKCC	GRCh37	19	18266704	18266704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	156	538	1	ENST00000222254.8:c.15G>T	p.Glu5Asp	p.E5D	ENST00000222254	NM_005027.3	5	gaG/gaT																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211568	36211568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	75	498	0	ENST00000222270.7:c.1319C>A	p.Pro440His	p.P440H	ENST00000222270	NM_014727.1	440	cCt/cAt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212249	36212251	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	241	620	1	ENST00000222270.7:c.2009_2011del	p.Pro670del	p.P670del	ENST00000222270	NM_014727.1	667	aCTCct/act																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36224532	36224532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs759167832		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	242	865	0	ENST00000222270.7:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000222270	NM_014727.1	2332	Cgt/Tgt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248729	212248729	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs142119532		P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	44	386	0	ENST00000342788.4:c.3538C>A	p.Leu1180Ile	p.L1180I	ENST00000342788	NM_005235.2	1180	Ctt/Att																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30733069	30733069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	110	470	0	ENST00000359013.4:c.1757G>T	p.Gly586Val	p.G586V	ENST00000359013	NM_001024847.2	586	gGc/gTc																																																																														
SHQ1	0	MSKCC	GRCh37	3	72890204	72890204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	109	464	0	ENST00000325599.8:c.478C>T	p.Arg160Trp	p.R160W	ENST00000325599	NM_018130.2	160	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112151233	112151240	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTTCTA	GAGTTCTA	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	131	477	0	ENST00000257430.4:c.877_884del	p.Ser293Ter	p.S293*	ENST00000257430	NM_000038.5	292	ttGAGTTCTAgt/ttgt																																																																														
RAD50	0	MSKCC	GRCh37	5	131931411	131931411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	131	436	0	ENST00000265335.6:c.2116C>T	p.Arg706Ter	p.R706*	ENST00000265335		706	Cga/Tga																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149515273	149515273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	120	567	0	ENST00000261799.4:c.209del	p.Pro70HisfsTer18	p.P70Hfs*18	ENST00000261799	NM_002609.3	70	cCa/ca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859884	151859884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	84	342	0	ENST00000262189.6:c.10778A>G	p.Tyr3593Cys	p.Y3593C	ENST00000262189	NM_170606.2	3593	tAt/tGt																																																																														
SOX17	0	MSKCC	GRCh37	8	55371677	55371677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	120	609	1	ENST00000297316.4:c.367C>T	p.Arg123Trp	p.R123W	ENST00000297316	NM_022454.3	123	Cgg/Tgg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971109	21971109	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	80	303	0	ENST00000361570.3:c.415C>T	p.Arg139Ter	p.R139*	ENST00000361570	NM_058195.3	139	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971109	21971109	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	80	303	0	ENST00000361570.3:c.415C>T	p.Arg139Ter	p.R139*	ENST00000361570	NM_058195.3	139	Cga/Tga																																																																														
ABL1	0	MSKCC	GRCh37	9	133760706	133760706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	167	783	0	ENST00000318560.5:c.3029T>C	p.Val1010Ala	p.V1010A	ENST00000318560	NM_005157.4	1010	gTg/gCg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	147	704	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	89	252	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061213	38061213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	148	445	0	ENST00000250448.2:c.776A>G	p.Tyr259Cys	p.Y259C	ENST00000250448	NM_004496.3	259	tAc/tGc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	203	518	1	ENST00000347630.2:c.393G>T	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgT																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162820	38162820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	447	579	0	ENST00000317025.8:c.2386C>G	p.Gln796Glu	p.Q796E	ENST00000317025	NM_023034.1	796	Cag/Gag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162848	38162848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	507	666	0	ENST00000317025.8:c.2358C>G	p.Ile786Met	p.I786M	ENST00000317025	NM_023034.1	786	atC/atG																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915940	127915940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	266	503	1	ENST00000373547.4:c.541C>T	p.Arg181Trp	p.R181W	ENST00000373547	NM_002721.4	181	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	126	602	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920469	134920469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	41	696	0	ENST00000398015.3:c.2284G>A	p.Asp762Asn	p.D762N	ENST00000398015	NM_004441.4	762	Gac/Aac																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0028577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	10	442	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264932	46264932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	56	577	0	ENST00000371998.3:c.1802G>A	p.Ser601Asn	p.S601N	ENST00000371998		601	aGc/aAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	474	468	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	386	770	0	ENST00000269305.4:c.503A>C	p.His168Pro	p.H168P	ENST00000269305	NM_001126112.2	168	cAc/cCc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	216	558	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	445	561	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	88	213	0				ENST00000310581	NM_198253.2																																																																																
MTOR	0	MSKCC	GRCh37	1	11189847	11189847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	281	709	0	ENST00000361445.4:c.5662T>C	p.Phe1888Leu	p.F1888L	ENST00000361445	NM_004958.3	1888	Ttc/Ctc																																																																														
APC	324	MSKCC	GRCh37	5	112174213	112174214	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	186	499	0	ENST00000257430.4:c.2926dup	p.Arg976LysfsTer9	p.R976Kfs*9	ENST00000257430	NM_000038.5	974	-/A																																																																														
ELF3	0	MSKCC	GRCh37	1	201980403	201980404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCAGATG			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1291	279	729	0	ENST00000359651.3:c.140_147dup	p.Ser50ProfsTer108	p.S50Pfs*108	ENST00000359651		47	ccc/cCCCAGATGcc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457409	67457410	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	61	687	0	ENST00000327367.4:c.387_388del	p.Arg129SerfsTer36	p.R129Sfs*36	ENST00000327367	NM_005902.3	128	cAG/c																																																																														
SMAD2	0	MSKCC	GRCh37	18	45394778	45394778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	64	511	0	ENST00000262160.6:c.571C>T	p.Pro191Ser	p.P191S	ENST00000262160	NM_005901.5	191	Ccg/Tcg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281281	15281281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	308	695	2	ENST00000263388.2:c.4975G>A	p.Val1659Ile	p.V1659I	ENST00000263388	NM_000435.2	1659	Gtc/Atc																																																																														
APC	0	MSKCC	GRCh37	5	112175729	112175729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	158	358	0	ENST00000257430.4:c.4438C>T	p.Gln1480Ter	p.Q1480*	ENST00000257430	NM_000038.5	1480	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	90	518	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	87	656	1	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	87	502	0	ENST00000263967.3:c.333G>C	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaC																																																																														
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	34	680	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421790	49421790	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0028587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	58	795	1	ENST00000301067.7:c.14515+2T>C		p.X4839_splice	ENST00000301067	NM_003482.3	4839																																																																															
BRCA2	0	MSKCC	GRCh37	13	32907268	32907269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	67	663	0	ENST00000380152.3:c.1654dup	p.Ser552PhefsTer8	p.S552Ffs*8	ENST00000380152		551	-/T																																																																														
NUP93	0	MSKCC	GRCh37	16	56852645	56852645	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189324020		P-0028587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	50	593	0	ENST00000308159.5:c.559C>T	p.Arg187Trp	p.R187W	ENST00000308159	NM_014669.4	187	Cgg/Tgg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395683	45395683	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	39	511	0	ENST00000262160.6:c.451T>G	p.Tyr151Asp	p.Y151D	ENST00000262160	NM_005901.5	151	Tat/Gat																																																																														
CIC	0	MSKCC	GRCh37	19	42793241	42793241	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0028587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	43	724	0	ENST00000575354.2:c.1133A>C	p.Gln378Pro	p.Q378P	ENST00000575354	NM_015125.3	378	cAg/cCg																																																																														
MYCN	0	MSKCC	GRCh37	2	16082441	16082441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	26	771	0	ENST00000281043.3:c.255C>A	p.Asn85Lys	p.N85K	ENST00000281043	NM_005378.4	85	aaC/aaA																																																																														
FAT1	0	MSKCC	GRCh37	4	187628769	187628769	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	45	760	0	ENST00000441802.2:c.2213T>A	p.Phe738Tyr	p.F738Y	ENST00000441802	NM_005245.3	738	tTc/tAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	325	710	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	274	617	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39584438	39584438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	221	559	0	ENST00000262039.4:c.1103C>T	p.Ser368Phe	p.S368F	ENST00000262039	NM_002647.2	368	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	416	849	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	96	166	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	96	166	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88649856	88649856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	67	411	0	ENST00000372037.3:c.105G>A	p.Met35Ile	p.M35I	ENST00000372037	NM_004329.2	35	atG/atA																																																																														
SOX9	0	MSKCC	GRCh37	17	70117545	70117545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	209	600	0	ENST00000245479.2:c.13G>A	p.Asp5Asn	p.D5N	ENST00000245479	NM_000346.3	5	Gac/Aac																																																																														
SPEN	0	MSKCC	GRCh37	1	16257226	16257226	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	268	686	0	ENST00000375759.3:c.4491G>C	p.Lys1497Asn	p.K1497N	ENST00000375759	NM_015001.2	1497	aaG/aaC																																																																														
SMYD3	0	MSKCC	GRCh37	1	245927422	245927422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	126	656	0	ENST00000388985.4:c.1106G>C	p.Arg369Thr	p.R369T	ENST00000388985		369	aGa/aCa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18443859	18443859	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	157	604	0	ENST00000266497.5:c.832T>A	p.Phe278Ile	p.F278I	ENST00000266497		278	Ttt/Att																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445703	49445703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1507	183	1076	1	ENST00000301067.7:c.1763C>T	p.Ser588Leu	p.S588L	ENST00000301067	NM_003482.3	588	tCa/tTa																																																																														
CDK12	0	MSKCC	GRCh37	17	37673804	37673804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	61	643	0	ENST00000447079.4:c.2958C>G	p.Phe986Leu	p.F986L	ENST00000447079	NM_015083.1	986	ttC/ttG																																																																														
SMAD2	0	MSKCC	GRCh37	18	45374945	45374945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	245	641	0	ENST00000262160.6:c.898G>A	p.Asp300Asn	p.D300N	ENST00000262160	NM_005901.5	300	Gat/Aat																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602863	10602871	+	inframe_deletion	In_Frame_Del	DEL	CGTTCAGGT	CGTTCAGGT	-			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	368	856	0	ENST00000171111.5:c.707_715del	p.Asp236_Asn238del	p.D236_N238del	ENST00000171111	NM_203500.1	236	gACCTGAACGtg/gtg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11118590	11118590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	99	409	0	ENST00000344626.4:c.2014G>C	p.Glu672Gln	p.E672Q	ENST00000344626	NM_003072.3	672	Gag/Cag																																																																														
RTEL1	0	MSKCC	GRCh37	20	62293947	62293949	+	missense_variant	Missense_Mutation	ONP	TGA	TGA	CCT			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	134	732	2	ENST00000508582.2:c.516_518delinsCCT	p.Glu173Leu	p.E173L	ENST00000508582		172	ccTGAg/ccCCTg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71008508	71008508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	199	410	0	ENST00000318789.4:c.1924C>T	p.Pro642Ser	p.P642S	ENST00000318789	NM_032682.5	642	Cca/Tca																																																																														
GSK3B	0	MSKCC	GRCh37	3	119545642	119545642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	100	500	1	ENST00000316626.5:c.1295C>T	p.Ser432Phe	p.S432F	ENST00000316626		432	tCc/tTc																																																																														
KDR	0	MSKCC	GRCh37	4	55964346	55964346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	98	620	1	ENST00000263923.4:c.2467G>A	p.Asp823Asn	p.D823N	ENST00000263923	NM_002253.2	823	Gat/Aat																																																																														
FAT1	0	MSKCC	GRCh37	4	187542903	187542903	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	79	370	0	ENST00000441802.2:c.4837G>C	p.Asp1613His	p.D1613H	ENST00000441802	NM_005245.3	1613	Gat/Cat																																																																														
NSD1	0	MSKCC	GRCh37	5	176631156	176631156	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	256	583	0	ENST00000439151.2:c.1099G>C	p.Glu367Gln	p.E367Q	ENST00000439151	NM_022455.4	367	Gag/Cag																																																																														
DAXX	0	MSKCC	GRCh37	6	33287875	33287875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	277	605	0	ENST00000374542.5:c.1378G>C	p.Asp460His	p.D460H	ENST00000374542	NM_001141970.1	460	Gat/Cat																																																																														
RBM10	0	MSKCC	GRCh37	X	47045491	47045491	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	272	373	0	ENST00000329236.7:c.2224G>T	p.Glu742Ter	p.E742*	ENST00000329236	NM_001204466.1	742	Gaa/Taa																																																																														
ARAF	0	MSKCC	GRCh37	X	47426126	47426126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	373	436	0	ENST00000377045.4:c.646C>A	p.Pro216Thr	p.P216T	ENST00000377045	NM_001654.4	216	Ccc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7578188	7578194	+	frameshift_variant	Frame_Shift_Del	DEL	CATAGGG	CATAGGG	-			P-0028601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	209	777	0	ENST00000269305.4:c.655_661del	p.Pro219SerfsTer26	p.P219Sfs*26	ENST00000269305	NM_001126112.2	219	CCCTATGag/ag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291897	15291897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	254	862	2	ENST00000263388.2:c.2869G>A	p.Ala957Thr	p.A957T	ENST00000263388	NM_000435.2	957	Gcc/Acc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87317078	87317078	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	100	535	0	ENST00000277120.3:c.217A>G	p.Ile73Val	p.I73V	ENST00000277120		73	Atc/Gtc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	200	539	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	200	539	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	1917	569	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	449	650	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	200	539	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44910996	44910999	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0028603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	256	322	0	ENST00000377967.4:c.701_704delCAGA	p.Thr234ArgfsTer7	p.T234Rfs*7	ENST00000377967	NM_021140.2	233	CAGAca/ca																																																																														
CYLD	0	MSKCC	GRCh37	16	50827471	50827471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	105	523	1	ENST00000398568.2:c.2356C>T	p.Arg786Trp	p.R786W	ENST00000398568	NM_001042412.1	786	Cgg/Tgg																																																																														
NF1	0	MSKCC	GRCh37	17	29576112	29576112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	464	607	0	ENST00000358273.4:c.4085G>A	p.Arg1362Gln	p.R1362Q	ENST00000358273	NM_001042492.2	1362	cGa/cAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40747075	40747075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199637632		P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	504	682	3	ENST00000373198.4:c.3007G>A	p.Val1003Ile	p.V1003I	ENST00000373198	NM_133170.3	1003	Gtc/Atc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38314894	38314894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	468	536	0	ENST00000425967.3:c.170C>A	p.Ser57Tyr	p.S57Y	ENST00000425967	NM_001174067.1	57	tCc/tAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711873	89711873	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	335	445	0	ENST00000371953.3:c.493-2A>T		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																															
WT1	0	MSKCC	GRCh37	11	32417803	32417803	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	335	406	0	ENST00000332351.3:c.1249G>A	p.Gly417Ser	p.G417S	ENST00000332351	NM_024426.4	417	Ggt/Agt																																																																														
POLE	0	MSKCC	GRCh37	12	133218763	133218763	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	682	521	0	ENST00000320574.5:c.5173G>T	p.Val1725Leu	p.V1725L	ENST00000320574	NM_006231.2	1725	Gtg/Ttg																																																																														
LATS2	0	MSKCC	GRCh37	13	21562852	21562852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	660	728	1	ENST00000382592.4:c.1067A>G	p.Asn356Ser	p.N356S	ENST00000382592	NM_014572.2	356	aAc/aGc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514535	103514535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	562	342	0	ENST00000355739.4:c.1036C>G	p.Leu346Val	p.L346V	ENST00000355739	NM_000123.3	346	Cta/Gta																																																																														
BLM	0	MSKCC	GRCh37	15	91293193	91293193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	436	587	0	ENST00000355112.3:c.695G>T	p.Ser232Ile	p.S232I	ENST00000355112	NM_000057.2	232	aGc/aTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578253	7578254	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	624	718	1	ENST00000269305.4:c.595_596delinsAT	p.Gly199Ile	p.G199I	ENST00000269305	NM_001126112.2	199	GGa/ATa																																																																														
NF1	0	MSKCC	GRCh37	17	29653064	29653064	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	373	418	0	ENST00000358273.4:c.5062G>T	p.Glu1688Ter	p.E1688*	ENST00000358273	NM_001042492.2	1688	Gag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1207143	1207143	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	813	911	3	ENST00000326873.7:c.231del	p.Lys78ArgfsTer18	p.K78Rfs*18	ENST00000326873	NM_000455.4	77	gtC/gt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	674	753	0	ENST00000344626.4:c.2644G>C	p.Glu882Gln	p.E882Q	ENST00000344626	NM_003072.3	882	Gaa/Caa																																																																														
ALK	0	MSKCC	GRCh37	2	29455302	29455302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	418	494	0	ENST00000389048.3:c.2500G>T	p.Val834Leu	p.V834L	ENST00000389048	NM_004304.4	834	Gtg/Ttg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99170804	99170804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	521	562	0	ENST00000074304.5:c.1433G>T	p.Arg478Leu	p.R478L	ENST00000074304	NM_001134224.1	478	cGg/cTg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99189350	99189350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	578	698	0	ENST00000074304.5:c.2606G>T	p.Arg869Leu	p.R869L	ENST00000074304	NM_001134224.1	869	cGg/cTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9546901	9546901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	433	553	0	ENST00000353224.5:c.1121C>G	p.Pro374Arg	p.P374R	ENST00000353224	NM_177990.2	374	cCg/cGg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561251	9561251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	385	540	0	ENST00000353224.5:c.531C>A	p.His177Gln	p.H177Q	ENST00000353224	NM_177990.2	177	caC/caA																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023564	31023564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	720	567	1	ENST00000375687.4:c.3049G>T	p.Asp1017Tyr	p.D1017Y	ENST00000375687	NM_015338.5	1017	Gac/Tac																																																																														
ATR	0	MSKCC	GRCh37	3	142168299	142168299	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	352	488	0	ENST00000350721.4:c.7907T>G	p.Met2636Arg	p.M2636R	ENST00000350721	NM_001184.3	2636	aTg/aGg																																																																														
TP63	0	MSKCC	GRCh37	3	189526314	189526314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	382	382	0	ENST00000264731.3:c.578C>A	p.Thr193Lys	p.T193K	ENST00000264731	NM_003722.4	193	aCg/aAg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1955114	1955114	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	737	756	0	ENST00000382891.5:c.2201A>T	p.Gln734Leu	p.Q734L	ENST00000382891	NM_133335.3	734	cAg/cTg																																																																														
KDR	0	MSKCC	GRCh37	4	55964872	55964872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	193	451	0	ENST00000263923.4:c.2365G>C	p.Val789Leu	p.V789L	ENST00000263923	NM_002253.2	789	Gtt/Ctt																																																																														
RAD50	0	MSKCC	GRCh37	5	131944305	131944305	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	121	307	0	ENST00000265335.6:c.2719-2A>C		p.X907_splice	ENST00000265335		907																																																																															
FLT4	0	MSKCC	GRCh37	5	180047245	180047245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	341	816	2	ENST00000261937.6:c.2470C>A	p.Leu824Met	p.L824M	ENST00000261937	NM_182925.4	824	Ctg/Atg																																																																														
E2F3	0	MSKCC	GRCh37	6	20490522	20490522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	809	688	1	ENST00000346618.3:c.1259G>T	p.Gly420Val	p.G420V	ENST00000346618	NM_001949.4	420	gGa/gTa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32181947	32181947	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	1524	717	0	ENST00000375023.3:c.2107G>T	p.Gly703Trp	p.G703W	ENST00000375023	NM_004557.3	703	Ggg/Tgg																																																																														
PRDM1	0	MSKCC	GRCh37	6	106536190	106536190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	431	519	0	ENST00000369096.4:c.157G>A	p.Glu53Lys	p.E53K	ENST00000369096	NM_001198.3	53	Gag/Aag																																																																														
NTRK2	0	MSKCC	GRCh37	9	87359944	87359944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	464	508	0	ENST00000277120.3:c.1252C>A	p.Pro418Thr	p.P418T	ENST00000277120		418	Cct/Act																																																																														
RBM10	0	MSKCC	GRCh37	X	47030485	47030485	+	intron_variant	Intron	DEL	G	G	-			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	658	424	0	ENST00000329236.7:c.201+1589del		p.*67*	ENST00000329236	NM_001204466.1	67																																																																															
CDKN2A	0	MSKCC	GRCh37	9	21974812	21974813	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	123	126	0	ENST00000304494.5:c.14_15delinsA	p.Ala5GlufsTer21	p.A5Efs*21	ENST00000304494	NM_000077.4	5	gCG/gA																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974812	21974813	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0028606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	123	126	0	ENST00000304494.5:c.14_15delinsA	p.Ala5GlufsTer21	p.A5Efs*21	ENST00000304494	NM_000077.4	5	gCG/gA																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	186	439	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	136	420	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	281	623	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	476	571	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
IRS1	0	MSKCC	GRCh37	2	227661726	227661726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	242	477	0	ENST00000305123.5:c.1729G>A	p.Val577Met	p.V577M	ENST00000305123	NM_005544.2	577	Gtg/Atg																																																																														
STK11	0	MSKCC	GRCh37	19	1219317	1219321	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CCCCA	CCCCA	-			P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	250	623	0	ENST00000326873.7:c.375-5_375-1del		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																															
PIK3R2	0	MSKCC	GRCh37	19	18277009	18277009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	90	621	0	ENST00000222254.8:c.1456G>T	p.Glu486Ter	p.E486*	ENST00000222254	NM_005027.3	486	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	123	595	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0028609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	74	739	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
RBM10	0	MSKCC	GRCh37	X	47044713	47044713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	62	831	0	ENST00000329236.7:c.1879G>T	p.Glu627Ter	p.E627*	ENST00000329236	NM_001204466.1	627	Gag/Tag																																																																														
FGF19	0	MSKCC	GRCh37	11	69514079	69514079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	47	706	1	ENST00000294312.3:c.602G>T	p.Gly201Val	p.G201V	ENST00000294312	NM_005117.2	201	gGg/gTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0028610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	203	493	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0028610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	309	483	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88423601	88423601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	173	607	1	ENST00000360948.2:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000360948	NM_001012338.2	745	cGg/cAg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	456	652	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578555	7578566	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTGTAGGAAGAG	CTGTAGGAAGAG	-			P-0028610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	450	801	0	ENST00000269305.4:c.376-12_376-1del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
BRD4	0	MSKCC	GRCh37	19	15353966	15353966	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	108	218	1	ENST00000263377.2:c.2914C>T	p.Gln972Ter	p.Q972*	ENST00000263377	NM_058243.2	972	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	23	373	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0028613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	46	319	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	22	418	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120178	70120178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	70	400	0	ENST00000245479.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000245479	NM_000346.3	394	Cga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438641	49438641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	42	562	0	ENST00000301067.7:c.4849C>T	p.Arg1617Trp	p.R1617W	ENST00000301067	NM_003482.3	1617	Cgg/Tgg																																																																														
MTOR	0	MSKCC	GRCh37	1	11300434	11300434	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	223	437	0	ENST00000361445.4:c.1712C>G	p.Thr571Arg	p.T571R	ENST00000361445	NM_004958.3	571	aCg/aGg																																																																														
SDHA	0	MSKCC	GRCh37	5	231115	231115	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	262	468	1	ENST00000264932.6:c.895G>A	p.Gly299Ser	p.G299S	ENST00000264932	NM_004168.2	299	Ggc/Agc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0028615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	1449	565	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
RAB35	0	MSKCC	GRCh37	12	120536921	120536921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	243	640	0	ENST00000229340.5:c.265G>A	p.Asp89Asn	p.D89N	ENST00000229340	NM_006861.6	89	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7579408	7579408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	235	732	0	ENST00000269305.4:c.279delG	p.Ser94HisfsTer29	p.S94Hfs*29	ENST00000269305	NM_001126112.2	93	ctG/ct																																																																														
CASP8	841	MSKCC	GRCh37	2	202136260	202136262	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs763516126		P-0028615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	57	496	0	ENST00000358485.4:c.509_511del	p.Glu170del	p.E170del	ENST00000358485	NM_001080125.1	168	tcAGAa/tca																																																																														
APC	0	MSKCC	GRCh37	5	112154820	112154820	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	82	524	0	ENST00000257430.4:c.1091A>T	p.Asp364Val	p.D364V	ENST00000257430	NM_000038.5	364	gAc/gTc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38275463	38275463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	143	698	0	ENST00000425967.3:c.1570G>T	p.Val524Leu	p.V524L	ENST00000425967	NM_001174067.1	524	Gtg/Ttg																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	730	501	5	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																														
JAK1	0	MSKCC	GRCh37	1	65309758	65309758	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	157	409	0	ENST00000342505.4:c.2392A>G	p.Thr798Ala	p.T798A	ENST00000342505	NM_002227.2	798	Acg/Gcg																																																																														
PTEN	0	MSKCC	GRCh37	10	89624258	89624284	+	inframe_deletion	In_Frame_Del	DEL	GAAACAAAAGGAGATATCAAGAGGATG	GAAACAAAAGGAGATATCAAGAGGATG	-			P-0028616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	291	300	0	ENST00000371953.3:c.34_60del	p.Asn12_Gly20del	p.N12_G20del	ENST00000371953	NM_000314.4	11	aGAAACAAAAGGAGATATCAAGAGGATGga/aga																																																																														
RB1	0	MSKCC	GRCh37	13	48947539	48947539	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0028616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	228	422	1	ENST00000267163.4:c.1128-2del		p.X376_splice	ENST00000267163	NM_000321.2	376																																																																															
FANCA	0	MSKCC	GRCh37	16	89849326	89849326	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	209	515	0	ENST00000389301.3:c.1567G>T	p.Val523Phe	p.V523F	ENST00000389301	NM_000135.2	523	Gtt/Ttt																																																																														
NF1	0	MSKCC	GRCh37	17	29552188	29552188	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	491	365	0	ENST00000358273.4:c.1921A>T	p.Ser641Cys	p.S641C	ENST00000358273	NM_001042492.2	641	Agt/Tgt																																																																														
ALK	0	MSKCC	GRCh37	2	29443620	29443620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	537	626	2	ENST00000389048.3:c.3597G>T	p.Met1199Ile	p.M1199I	ENST00000389048	NM_004304.4	1199	atG/atT																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139403451	139403457	+	frameshift_variant	Frame_Shift_Del	DEL	CGTGAAG	CGTGAAG	-			P-0028616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	278	787	0	ENST00000277541.6:c.3036_3042del	p.Phe1013AlafsTer164	p.F1013Afs*164	ENST00000277541	NM_017617.3	1012	ggCTTCACG/gg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44941998	44941998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	109	219	0	ENST00000377967.4:c.3248A>T	p.Lys1083Met	p.K1083M	ENST00000377967	NM_021140.2	1083	aAg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	148	434	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	271	535	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
IDH2	0	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	122	599	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11168999	11168999	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	116	739	0	ENST00000344626.4:c.4493A>G	p.Tyr1498Cys	p.Y1498C	ENST00000344626	NM_003072.3	1498	tAc/tGc																																																																														
BAP1	0	MSKCC	GRCh37	3	52441414	52441414	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0028619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	89	595	0	ENST00000460680.1:c.437+1G>T		p.X146_splice	ENST00000460680	NM_004656.3	146																																																																															
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0028622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	150	594	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
IRS2	0	MSKCC	GRCh37	13	110436854	110436854	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	68	646	0	ENST00000375856.3:c.1547A>G	p.His516Arg	p.H516R	ENST00000375856	NM_003749.2	516	cAc/cGc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992825	72992825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	41	507	0	ENST00000268489.5:c.1220C>T	p.Thr407Ile	p.T407I	ENST00000268489	NM_006885.3	407	aCc/aTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730882	40730882	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	69	637	1	ENST00000373198.4:c.3653T>A	p.Leu1218Gln	p.L1218Q	ENST00000373198	NM_133170.3	1218	cTg/cAg																																																																														
NF1	0	MSKCC	GRCh37	17	29552120	29552120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	28	195	0	ENST00000358273.4:c.1853A>G	p.Asp618Gly	p.D618G	ENST00000358273	NM_001042492.2	618	gAt/gGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	163	614	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0028623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	125	599	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
ALK	0	MSKCC	GRCh37	2	29449800	29449800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76742576		P-0028623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	216	851	2	ENST00000389048.3:c.3055G>A	p.Val1019Ile	p.V1019I	ENST00000389048	NM_004304.4	1019	Gtc/Atc																																																																														
JAK1	0	MSKCC	GRCh37	1	65323451	65323451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	51	421	0	ENST00000342505.4:c.1346C>T	p.Ala449Val	p.A449V	ENST00000342505	NM_002227.2	449	gCc/gTc																																																																														
RBM10	0	MSKCC	GRCh37	X	47045184	47045198	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGGAGGTGAGGTGT	ATGGAGGTGAGGTGT	-			P-0028623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	115	558	2	ENST00000329236.7:c.2191_2196+9del		p.X731_splice	ENST00000329236	NM_001204466.1	731																																																																															
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	70	373	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7578195	7578197	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0028624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	119	621	0	ENST00000269305.4:c.652_654del	p.Val218del	p.V218del	ENST00000269305	NM_001126112.2	218	GTG/-																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421078	49421078	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	65	387	0	ENST00000301067.7:c.14671C>T	p.Gln4891Ter	p.Q4891*	ENST00000301067	NM_003482.3	4891	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023258	27023258	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	44	205	0	ENST00000324856.7:c.364G>T	p.Gly122Cys	p.G122C	ENST00000324856	NM_006015.4	122	Ggc/Tgc																																																																														
ELF3	0	MSKCC	GRCh37	1	201984387	201984406	+	frameshift_variant	Frame_Shift_Del	DEL	TCTACAAGTTTGGCAAAAAC	TCTACAAGTTTGGCAAAAAC	-			P-0028624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	160	582	0	ENST00000359651.3:c.1054_1073del	p.Tyr352LysfsTer112	p.Y352Kfs*112	ENST00000359651		351	gTCTACAAGTTTGGCAAAAAC/g																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440551	49440554	+	frameshift_variant	Frame_Shift_Ins	INS	TTGA	TTGA	ATAGG			P-0028624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	113	696	2	ENST00000301067.7:c.4256_4259delinsCCTAT	p.Leu1419ProfsTer13	p.L1419Pfs*13	ENST00000301067	NM_003482.3	1419	cTCAAg/cCCTATg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88727514	88727514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	133	377	0	ENST00000360948.2:c.265C>A	p.Arg89Ser	p.R89S	ENST00000360948	NM_001012338.2	89	Cgc/Agc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11169510	11169511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	35	607	0	ENST00000344626.4:c.4582dup	p.Asp1528GlyfsTer21	p.D1528Gfs*21	ENST00000344626	NM_003072.3	1527	aag/aaGg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15290231	15290231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	91	807	0	ENST00000263388.2:c.3404G>A	p.Gly1135Asp	p.G1135D	ENST00000263388	NM_000435.2	1135	gGt/gAt																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27840090	27840090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	37	214	0	ENST00000328488.2:c.4G>A	p.Ala2Thr	p.A2T	ENST00000328488	NM_003533.2	2	Gca/Aca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993339	72993339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	402	714	0	ENST00000268489.5:c.706G>A	p.Val236Met	p.V236M	ENST00000268489	NM_006885.3	236	Gtg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7579536	7579537	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATA			P-0028625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	751	680	1	ENST00000269305.4:c.147_150dup	p.Glu51TyrfsTer2	p.E51Yfs*2	ENST00000269305	NM_001126112.2	50	-/TATT																																																																														
RASA1	0	MSKCC	GRCh37	5	86670040	86670040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	84	451	0	ENST00000274376.6:c.1837A>G	p.Asn613Asp	p.N613D	ENST00000274376	NM_002890.2	613	Aat/Gat																																																																														
HGF	0	MSKCC	GRCh37	7	81374326	81374326	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	110	316	0	ENST00000222390.5:c.736T>A	p.Leu246Met	p.L246M	ENST00000222390	NM_000601.4	246	Ttg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	42	364	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271321	26271321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	35	454	0	ENST00000305910.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000305910	NM_003534.2	98	Gag/Aag																																																																														
TET2	0	MSKCC	GRCh37	4	106155491	106155491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	29	334	0	ENST00000380013.4:c.392G>T	p.Arg131Ile	p.R131I	ENST00000380013	NM_001127208.2	131	aGa/aTa																																																																														
EZH1	0	MSKCC	GRCh37	17	40874888	40874888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	51	476	1	ENST00000428826.2:c.412G>A	p.Glu138Lys	p.E138K	ENST00000428826		138	Gaa/Aaa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710987	114710987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	37	363	0	ENST00000543371.1:c.211C>G	p.Arg71Gly	p.R71G	ENST00000543371	NM_001198531.1	71	Cgc/Ggc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099423	27099423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	60	512	0	ENST00000324856.7:c.3660G>A	p.Met1220Ile	p.M1220I	ENST00000324856	NM_006015.4	1220	atG/atA																																																																														
IL10	0	MSKCC	GRCh37	1	206945760	206945761	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	112	422	0	ENST00000423557.1:c.20_21delinsAT	p.Leu7His	p.L7H	ENST00000423557	NM_000572.2	7	cTC/cAT																																																																														
INPPL1	0	MSKCC	GRCh37	11	71940151	71940151	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	60	713	0	ENST00000298229.2:c.536G>C	p.Ser179Thr	p.S179T	ENST00000298229	NM_001567.3	179	aGc/aCc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71940566	71940566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	71	603	0	ENST00000298229.2:c.717G>C	p.Gln239His	p.Q239H	ENST00000298229	NM_001567.3	239	caG/caC																																																																														
RAD51C	0	MSKCC	GRCh37	17	56787283	56787283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	43	441	0	ENST00000337432.4:c.769C>G	p.Leu257Val	p.L257V	ENST00000337432	NM_058216.2	257	Ctt/Gtt																																																																														
POLD1	0	MSKCC	GRCh37	19	50910632	50910632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	68	677	0	ENST00000440232.2:c.1735G>A	p.Glu579Lys	p.E579K	ENST00000440232	NM_002691.3	579	Gag/Aag																																																																														
GATA2	0	MSKCC	GRCh37	3	128205192	128205192	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	52	476	0	ENST00000341105.2:c.249G>C	p.Gln83His	p.Q83H	ENST00000341105	NM_032638.4	83	caG/caC																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201794	66201794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	43	462	0	ENST00000273854.3:c.2708G>T	p.Cys903Phe	p.C903F	ENST00000273854	NM_004439.5	903	tGt/tTt																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741458	145741458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	83	776	0	ENST00000428558.2:c.1045G>A	p.Asp349Asn	p.D349N	ENST00000428558	NM_004260.3	349	Gac/Aac																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741857	145741857	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201301365		P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	54	673	0	ENST00000428558.2:c.646G>A	p.Glu216Lys	p.E216K	ENST00000428558	NM_004260.3	216	Gaa/Aaa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145742108	145742108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	76	566	0	ENST00000428558.2:c.395G>A	p.Arg132Lys	p.R132K	ENST00000428558	NM_004260.3	132	aGa/aAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100950	41100950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	35	455	0	ENST00000373198.4:c.1406G>T	p.Gly469Val	p.G469V	ENST00000373198	NM_133170.3	469	gGc/gTc																																																																														
MGA	0	MSKCC	GRCh37	15	42053934	42053941	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGGCCTT	TAGGCCTT	-			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	77	283	0	ENST00000219905.7:c.7399-3_7403del		p.X2467_splice	ENST00000219905	NM_001164273.1	2467																																																																															
SOS1	0	MSKCC	GRCh37	2	39233616	39233616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	98	449	0	ENST00000402219.2:c.2728G>T	p.Asp910Tyr	p.D910Y	ENST00000402219	NM_005633.3	910	Gat/Tat																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391202	89391202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	33	373	0	ENST00000336596.2:c.1268G>T	p.Arg423Ile	p.R423I	ENST00000336596	NM_005233.5	423	aGa/aTa																																																																														
KIT	0	MSKCC	GRCh37	4	55564686	55564686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	42	475	0	ENST00000288135.5:c.574G>A	p.Gly192Ser	p.G192S	ENST00000288135	NM_000222.2	192	Ggc/Agc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197762	66197762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	47	419	0	ENST00000273854.3:c.2937G>C	p.Met979Ile	p.M979I	ENST00000273854	NM_004439.5	979	atG/atC																																																																														
MET	0	MSKCC	GRCh37	7	116412042	116412047	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTAT	AGGTAT	-			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	172	642	0	ENST00000397752.3:c.3028_3028+5delGGTATA		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
PTPRD	0	MSKCC	GRCh37	9	8525018	8525018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	25	356	0	ENST00000356435.5:c.586C>A	p.Gln196Lys	p.Q196K	ENST00000356435		196	Cag/Aag																																																																														
MED12	0	MSKCC	GRCh37	X	70340847	70340847	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	46	585	0	ENST00000374080.3:c.580T>G	p.Leu194Val	p.L194V	ENST00000374080		194	Tta/Gta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	58	441	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	149	638	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																														
TOP1	0	MSKCC	GRCh37	20	39741564	39742586	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGAGAGCATCTTCCCATCGGCATTGTCTAGTGTTGAGCTTAACAAAGGGAGTTTCTGCTCTGCCCCAGGCCCTGTGCCACATACTGTATATCACAACTCAACATACATATATTTGTATGTAAAACTGAATCAAAAGTTGCACAAAACAATGCTTAGCCTTACTGTGAGCAGTAGATTCTGATCTTTTTTTAACTCTATTTCATTCCTTTAGAAAGTTGGTTATAACTTATAAAATTGTTTAAATAAACCATGCAGGTATCACCATTATATAGTTTTAAAGACCACGCTCTAGAGGAGATCAATTTCTTGGTACTCACGAGAAGAAAAAAAAGTTCATGTTTTTCCCCCAGTCTTGTATTTTAACATAAGTTCTGAATTGTCTCAAAATTCACACTAGCTTTTTGAGTTTGATTGCCCAGAGTAGCAGCACTCCCTCATTTGCTGCCTTATTTAATTTTTTTTTTCCTTTTCTCCATCCCTATTTCAGAGGACAGAATAGAAAGAAAAGGAGCATGAATATTTAACATCCCTATAGATTTCATAGTGAGTGGGGGAGGAAGTAACACTGCAGAATCCAGAGTTCCCAGGCCATGCTGACTGATGCTGTGGCTTCAAACAGAATTGGGAGGCTTCTGTTTTGGATGCCTAGAAATTGCATAAGGGTCAAAAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGAACACGAGGTCAAGAGACCATCCTGGCCAATGTGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAAAAATAAAAATTGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTCGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGACGGAGCTTGCAGTGAGCCAAAATTGCGCCATTGCACTCTAGCCTGGCGACAGAGCGAGACTGTCTCAAAAAAAAAAAAAAAAAAAACACAGAACGAAATTGTGTAAGGATCATGTCTCTTCCATTCATGCTCA	AGGTGAGAGCATCTTCCCATCGGCATTGTCTAGTGTTGAGCTTAACAAAGGGAGTTTCTGCTCTGCCCCAGGCCCTGTGCCACATACTGTATATCACAACTCAACATACATATATTTGTATGTAAAACTGAATCAAAAGTTGCACAAAACAATGCTTAGCCTTACTGTGAGCAGTAGATTCTGATCTTTTTTTAACTCTATTTCATTCCTTTAGAAAGTTGGTTATAACTTATAAAATTGTTTAAATAAACCATGCAGGTATCACCATTATATAGTTTTAAAGACCACGCTCTAGAGGAGATCAATTTCTTGGTACTCACGAGAAGAAAAAAAAGTTCATGTTTTTCCCCCAGTCTTGTATTTTAACATAAGTTCTGAATTGTCTCAAAATTCACACTAGCTTTTTGAGTTTGATTGCCCAGAGTAGCAGCACTCCCTCATTTGCTGCCTTATTTAATTTTTTTTTTCCTTTTCTCCATCCCTATTTCAGAGGACAGAATAGAAAGAAAAGGAGCATGAATATTTAACATCCCTATAGATTTCATAGTGAGTGGGGGAGGAAGTAACACTGCAGAATCCAGAGTTCCCAGGCCATGCTGACTGATGCTGTGGCTTCAAACAGAATTGGGAGGCTTCTGTTTTGGATGCCTAGAAATTGCATAAGGGTCAAAAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGAACACGAGGTCAAGAGACCATCCTGGCCAATGTGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAAAAATAAAAATTGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTCGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGACGGAGCTTGCAGTGAGCCAAAATTGCGCCATTGCACTCTAGCCTGGCGACAGAGCGAGACTGTCTCAAAAAAAAAAAAAAAAAAAACACAGAACGAAATTGTGTAAGGATCATGTCTCTTCCATTCATGCTCA	-			P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	41	367	0	ENST00000361337.2:c.1451_1453-24del		p.X484_splice	ENST00000361337	NM_003286.2	484																																																																															
ARID1A	0	MSKCC	GRCh37	1	27099394	27099395	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	129	680	0	ENST00000324856.7:c.3632_3633del	p.Tyr1211SerfsTer8	p.Y1211Sfs*8	ENST00000324856	NM_006015.4	1211	TAt/t																																																																														
NF1	0	MSKCC	GRCh37	17	29559209	29559209	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	117	331	0	ENST00000358273.4:c.3314+2T>C		p.X1105_splice	ENST00000358273	NM_001042492.2	1105																																																																															
TOP1	0	MSKCC	GRCh37	20	39728884	39729848	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGCTCGCACTTCATCCTATGGGCCAAAAAGGGGGTGGAGGGCGTCCTTTATTGTACTTGGGAATATTTCCCAGGTTACACAGGACTGTTTGGGAAGGGAGATACTTAAGAGCAGGACAGTATTTCATGCGTAGGTCTCCAGATGTTTTTGAGGTACAGTTGTCTCCCCTCATCCACAGGGGATATGTTCCAAGACCCCCAGTGGATGCCTGCAACTTCGACCCAATTGCTGTCACTTGGAACACATTTCTGTTGATGTCTTCCACCCCCAAATTTAATGTCTTTTCCATGTTTATTAAGTACTTATCACATAGAGTGGCTATAACTTTTGCAGTCTGAGGCACAACAGCAAAACTAGCACGACTTTCTTTTTCCTTCTTCACAATTTCACAGATGGAAGGTTAATTCTTACCTTAGATCTTAGCAACTTCACCATACAGTTTTTTTTATTAAGTCGATAATTTCCACCTTTTCATTTAAAGCACTCTGTGCAGCTTCTGTATGGCATATCCAAATTGCCAACATCACCACTTTCACACTTTGGGGCCTTTATTAAGTAAAAGAAGGATTACTTGAACACAAGCAATGTAAAACCATTAAAGTCAACCTGATAAATAAGGCAGCTACTAGGTTACCCATGGGCAAGTGACATATACAGCATGGTATGTTGTATATATGGTTCACGCATCCCAGGTGGGACTACAAGAGATTTCATCATGCTCCTCAGAATGATGTGCAATTTAAAACTTACAAAATGTTTATTTCTGGAATTTTGTATTGAATATTTTCGGATGACAGTTGGCTGAGGGTAAGTAAAACCATGCATAAGGTGGGACTACTGTATTGACTGTTAAGAAGGAAACTTGGAAAATTATGCTCAGCAGATAGGTCCACTTGGGGTCATGAAAGGTGAAATTATTCCTCACATCTTATTTCACTATCCTCGTGCTCTGTTATTTCCAG	GTGAGCTCGCACTTCATCCTATGGGCCAAAAAGGGGGTGGAGGGCGTCCTTTATTGTACTTGGGAATATTTCCCAGGTTACACAGGACTGTTTGGGAAGGGAGATACTTAAGAGCAGGACAGTATTTCATGCGTAGGTCTCCAGATGTTTTTGAGGTACAGTTGTCTCCCCTCATCCACAGGGGATATGTTCCAAGACCCCCAGTGGATGCCTGCAACTTCGACCCAATTGCTGTCACTTGGAACACATTTCTGTTGATGTCTTCCACCCCCAAATTTAATGTCTTTTCCATGTTTATTAAGTACTTATCACATAGAGTGGCTATAACTTTTGCAGTCTGAGGCACAACAGCAAAACTAGCACGACTTTCTTTTTCCTTCTTCACAATTTCACAGATGGAAGGTTAATTCTTACCTTAGATCTTAGCAACTTCACCATACAGTTTTTTTTATTAAGTCGATAATTTCCACCTTTTCATTTAAAGCACTCTGTGCAGCTTCTGTATGGCATATCCAAATTGCCAACATCACCACTTTCACACTTTGGGGCCTTTATTAAGTAAAAGAAGGATTACTTGAACACAAGCAATGTAAAACCATTAAAGTCAACCTGATAAATAAGGCAGCTACTAGGTTACCCATGGGCAAGTGACATATACAGCATGGTATGTTGTATATATGGTTCACGCATCCCAGGTGGGACTACAAGAGATTTCATCATGCTCCTCAGAATGATGTGCAATTTAAAACTTACAAAATGTTTATTTCTGGAATTTTGTATTGAATATTTTCGGATGACAGTTGGCTGAGGGTAAGTAAAACCATGCATAAGGTGGGACTACTGTATTGACTGTTAAGAAGGAAACTTGGAAAATTATGCTCAGCAGATAGGTCCACTTGGGGTCATGAAAGGTGAAATTATTCCTCACATCTTATTTCACTATCCTCGTGCTCTGTTATTTCCAG	-			P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	41	332	0	ENST00000361337.2:c.1163+1_1164-1del		p.X388_splice	ENST00000361337	NM_003286.2	388																																																																															
RASA1	0	MSKCC	GRCh37	5	86665706	86665706	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	60	321	0	ENST00000274376.6:c.1687G>T	p.Glu563Ter	p.E563*	ENST00000274376	NM_002890.2	563	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	47	231	0				ENST00000310581	NM_198253.2																																																																																
PAK1	0	MSKCC	GRCh37	11	77090327	77090327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	85	556	0	ENST00000356341.3:c.398C>T	p.Ser133Leu	p.S133L	ENST00000356341	NM_002576.4	133	tCg/tTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	51	398	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	51	398	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
NRAS	0	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	276	629	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
ALK	0	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	81	599	0	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga																																																																														
PGR	0	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	35	412	0	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga																																																																														
IL7R	0	MSKCC	GRCh37	5	35876163	35876163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	88	592	0	ENST00000303115.3:c.955G>A	p.Glu319Lys	p.E319K	ENST00000303115	NM_002185.3	319	Gaa/Aaa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643672	52643672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	72	618	0	ENST00000394830.3:c.2224G>A	p.Glu742Lys	p.E742K	ENST00000394830	NM_018313.4	742	Gag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187524726	187524726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	127	712	0	ENST00000441802.2:c.10954C>T	p.Pro3652Ser	p.P3652S	ENST00000441802	NM_005245.3	3652	Ccg/Tcg																																																																														
MST1R	0	MSKCC	GRCh37	3	49934225	49934225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	96	660	0	ENST00000296474.3:c.2282C>T	p.Ser761Phe	p.S761F	ENST00000296474	NM_002447.2	761	tCc/tTc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450394	50450394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	62	472	0	ENST00000331340.3:c.578G>A	p.Arg193Lys	p.R193K	ENST00000331340	NM_006060.4	193	aGg/aAg																																																																														
ROS1	0	MSKCC	GRCh37	6	117622236	117622236	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	69	474	0	ENST00000368508.3:c.6634C>T	p.Gln2212Ter	p.Q2212*	ENST00000368508	NM_002944.2	2212	Cag/Tag																																																																														
PREX2	0	MSKCC	GRCh37	8	69143593	69143593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	116	422	0	ENST00000288368.4:c.4801C>T	p.Pro1601Ser	p.P1601S	ENST00000288368	NM_024870.2	1601	Ccc/Tcc																																																																														
EP300	0	MSKCC	GRCh37	22	41521995	41521995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	92	575	0	ENST00000263253.7:c.857C>T	p.Pro286Leu	p.P286L	ENST00000263253	NM_001429.3	286	cCa/cTa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226995	2226995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	86	499	0	ENST00000398665.3:c.4475C>T	p.Ser1492Phe	p.S1492F	ENST00000398665	NM_032482.2	1492	tCc/tTc																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699447	117699447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	60	517	0	ENST00000369458.3:c.194C>T	p.Ser65Phe	p.S65F	ENST00000369458	NM_024626.3	65	tCt/tTt																																																																														
PREX2	0	MSKCC	GRCh37	8	68950469	68950469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	74	492	0	ENST00000288368.4:c.781C>T	p.Gln261Ter	p.Q261*	ENST00000288368	NM_024870.2	261	Caa/Taa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40757459	40757459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	90	634	0	ENST00000373198.4:c.2839C>T	p.Arg947Trp	p.R947W	ENST00000373198	NM_133170.3	947	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087929	27087929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	82	685	0	ENST00000324856.7:c.2216C>T	p.Pro739Leu	p.P739L	ENST00000324856	NM_006015.4	739	cCt/cTt																																																																														
RFWD2	0	MSKCC	GRCh37	1	175956141	175956141	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	28	571	1	ENST00000367669.3:c.2071C>T	p.Arg691Ter	p.R691*	ENST00000367669	NM_022457.5	691	Cga/Tga																																																																														
IL10	0	MSKCC	GRCh37	1	206944372	206944372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	50	477	0	ENST00000423557.1:c.258G>A	p.Met86Ile	p.M86I	ENST00000423557	NM_000572.2	86	atG/atA																																																																														
MRE11A	0	MSKCC	GRCh37	11	94212923	94212923	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	51	405	0	ENST00000323929.3:c.319C>G	p.Pro107Ala	p.P107A	ENST00000323929	NM_005591.3	107	Cca/Gca																																																																														
PGR	0	MSKCC	GRCh37	11	100933387	100933387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	63	517	1	ENST00000325455.5:c.2003C>T	p.Ala668Val	p.A668V	ENST00000325455	NM_001202474.3	668	gCc/gTc																																																																														
ATM	0	MSKCC	GRCh37	11	108205805	108205805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	84	537	0	ENST00000278616.4:c.8120C>T	p.Ser2707Phe	p.S2707F	ENST00000278616	NM_000051.3	2707	tCc/tTc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118348802	118348802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	74	439	0	ENST00000534358.1:c.3455C>T	p.Ser1152Leu	p.S1152L	ENST00000534358	NM_005933.3	1152	tCg/tTg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18641559	18641559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	46	439	0	ENST00000266497.5:c.2558G>A	p.Arg853Lys	p.R853K	ENST00000266497		853	aGa/aAa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18691095	18691095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	35	441	0	ENST00000266497.5:c.3206G>A	p.Arg1069Gln	p.R1069Q	ENST00000266497		1069	cGa/cAa																																																																														
ARID2	0	MSKCC	GRCh37	12	46246111	46246111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	64	446	0	ENST00000334344.6:c.4205C>T	p.Thr1402Ile	p.T1402I	ENST00000334344	NM_152641.2	1402	aCt/aTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424207	49424207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	40	207	0	ENST00000301067.7:c.13855C>T	p.Pro4619Ser	p.P4619S	ENST00000301067	NM_003482.3	4619	Ccg/Tcg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432237	49432237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	110	694	0	ENST00000301067.7:c.8902C>T	p.Pro2968Ser	p.P2968S	ENST00000301067	NM_003482.3	2968	Ccg/Tcg																																																																														
LATS2	0	MSKCC	GRCh37	13	21549225	21549226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	118	675	0	ENST00000382592.4:c.3049_3050dup	p.Ser1018ValfsTer55	p.S1018Vfs*55	ENST00000382592	NM_014572.2	1017	ggt/ggGGt																																																																														
FLT1	0	MSKCC	GRCh37	13	28963972	28963972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	56	450	0	ENST00000282397.4:c.1930G>A	p.Gly644Arg	p.G644R	ENST00000282397	NM_002019.4	644	Ggg/Agg																																																																														
FLT1	0	MSKCC	GRCh37	13	28971168	28971168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	65	393	0	ENST00000282397.4:c.1589C>T	p.Ser530Phe	p.S530F	ENST00000282397	NM_002019.4	530	tCt/tTt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88483892	88483892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	94	609	0	ENST00000360948.2:c.1678C>T	p.Leu560Phe	p.L560F	ENST00000360948	NM_001012338.2	560	Ctc/Ttc																																																																														
BLM	0	MSKCC	GRCh37	15	91292979	91292979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	100	586	0	ENST00000355112.3:c.481G>T	p.Asp161Tyr	p.D161Y	ENST00000355112	NM_000057.2	161	Gat/Tat																																																																														
IGF1R	0	MSKCC	GRCh37	15	99251264	99251264	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144739747		P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	90	606	0	ENST00000268035.6:c.568C>T	p.Pro190Ser	p.P190S	ENST00000268035	NM_000875.3	190	Ccg/Tcg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786152	3786152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	100	706	2	ENST00000262367.5:c.4613C>T	p.Pro1538Leu	p.P1538L	ENST00000262367	NM_004380.2	1538	cCc/cTc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81965195	81965195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	102	637	0	ENST00000359376.3:c.2675G>A	p.Arg892Lys	p.R892K	ENST00000359376	NM_002661.3	892	aGg/aAg																																																																														
NF1	0	MSKCC	GRCh37	17	29509638	29509639	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	47	589	0	ENST00000358273.4:c.843_844delinsTT	p.Gln282Ter	p.Q282*	ENST00000358273	NM_001042492.2	281	atCCag/atTTag																																																																														
CDK12	0	MSKCC	GRCh37	17	37627689	37627689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	92	660	1	ENST00000447079.4:c.1604C>T	p.Pro535Leu	p.P535L	ENST00000447079	NM_015083.1	535	cCc/cTc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245007	41245007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	82	649	0	ENST00000357654.3:c.2541G>A	p.Met847Ile	p.M847I	ENST00000357654	NM_007294.3	847	atG/atA																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604662	48604662	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	61	358	1	ENST00000342988.3:c.1484T>A	p.Leu495His	p.L495H	ENST00000342988	NM_005359.5	495	cTt/cAt																																																																														
JAK3	0	MSKCC	GRCh37	19	17943508	17943508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	86	567	0	ENST00000458235.1:c.2500G>A	p.Gly834Ser	p.G834S	ENST00000458235	NM_000215.3	834	Ggc/Agc																																																																														
ALK	0	MSKCC	GRCh37	2	29443589	29443589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	113	638	1	ENST00000389048.3:c.3628G>A	p.Glu1210Lys	p.E1210K	ENST00000389048	NM_004304.4	1210	Gag/Aag																																																																														
RTEL1	0	MSKCC	GRCh37	20	62325761	62325761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	106	567	0	ENST00000508582.2:c.3101C>A	p.Thr1034Lys	p.T1034K	ENST00000508582		1034	aCg/aAg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89462370	89462371	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	77	574	2	ENST00000336596.2:c.1842_1843delinsAA	p.Glu615Lys	p.E615K	ENST00000336596	NM_005233.5	614	aaGGaa/aaAAaa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134898747	134898747	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	84	417	0	ENST00000398015.3:c.1805A>T	p.Asp602Val	p.D602V	ENST00000398015	NM_004441.4	602	gAt/gTt																																																																														
ATR	0	MSKCC	GRCh37	3	142281301	142281301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	90	564	0	ENST00000350721.4:c.943C>T	p.Pro315Ser	p.P315S	ENST00000350721	NM_001184.3	315	Cct/Tct																																																																														
TP63	0	MSKCC	GRCh37	3	189612086	189612086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	92	593	0	ENST00000264731.3:c.1838C>T	p.Pro613Leu	p.P613L	ENST00000264731	NM_003722.4	613	cCt/cTt																																																																														
TET2	0	MSKCC	GRCh37	4	106157359	106157359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	72	516	2	ENST00000380013.4:c.2260G>A	p.Glu754Lys	p.E754K	ENST00000380013	NM_001127208.2	754	Gag/Aag																																																																														
TET2	0	MSKCC	GRCh37	4	106197072	106197072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	60	337	0	ENST00000380013.4:c.5405C>T	p.Pro1802Leu	p.P1802L	ENST00000380013	NM_001127208.2	1802	cCa/cTa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56167812	56167812	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	88	462	0	ENST00000399503.3:c.1377T>G	p.Cys459Trp	p.C459W	ENST00000399503	NM_005921.1	459	tgT/tgG																																																																														
APC	0	MSKCC	GRCh37	5	112102990	112102990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	58	512	0	ENST00000257430.4:c.325G>A	p.Glu109Lys	p.E109K	ENST00000257430	NM_000038.5	109	Gag/Aag																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032137	26032137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	58	371	0	ENST00000244661.2:c.152A>G	p.Glu51Gly	p.E51G	ENST00000244661	NM_003537.3	51	gAg/gGg																																																																														
PARK2	0	MSKCC	GRCh37	6	161771213	161771214	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	78	547	1	ENST00000366898.1:c.1315_1316delinsTT	p.Pro439Phe	p.P439F	ENST00000366898	NM_004562.2	439	CCc/TTc																																																																														
PARK2	0	MSKCC	GRCh37	6	162622244	162622244	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	60	410	0	ENST00000366898.1:c.453A>C	p.Lys151Asn	p.K151N	ENST00000366898	NM_004562.2	151	aaA/aaC																																																																														
INHBA	0	MSKCC	GRCh37	7	41729835	41729835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	68	344	0	ENST00000242208.4:c.694G>A	p.Asp232Asn	p.D232N	ENST00000242208	NM_002192.2	232	Gac/Aac																																																																														
INHBA	0	MSKCC	GRCh37	7	41739950	41739950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	83	471	0	ENST00000242208.4:c.23G>A	p.Gly8Glu	p.G8E	ENST00000242208	NM_002192.2	8	gGa/gAa																																																																														
PREX2	0	MSKCC	GRCh37	8	68956759	68956759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	83	663	1	ENST00000288368.4:c.877C>T	p.Arg293Trp	p.R293W	ENST00000288368	NM_024870.2	293	Cgg/Tgg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518124	8518124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	93	468	0	ENST00000356435.5:c.1267G>A	p.Asp423Asn	p.D423N	ENST00000356435		423	Gat/Aat																																																																														
TEK	0	MSKCC	GRCh37	9	27180337	27180337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	89	448	0	ENST00000380036.4:c.1001G>A	p.Gly334Glu	p.G334E	ENST00000380036	NM_000459.3	334	gGa/gAa																																																																														
TEK	0	MSKCC	GRCh37	9	27190614	27190614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	89	651	1	ENST00000380036.4:c.1415G>A	p.Gly472Glu	p.G472E	ENST00000380036	NM_000459.3	472	gGg/gAg																																																																														
TEK	0	MSKCC	GRCh37	9	27203051	27203051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	93	643	0	ENST00000380036.4:c.2143G>A	p.Glu715Lys	p.E715K	ENST00000380036	NM_000459.3	715	Gag/Aag																																																																														
PTCH1	0	MSKCC	GRCh37	9	98240386	98240386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	70	469	0	ENST00000331920.6:c.1298C>T	p.Ser433Phe	p.S433F	ENST00000331920	NM_000264.3	433	tCc/tTc																																																																														
ABL1	0	MSKCC	GRCh37	9	133750254	133750254	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	72	459	0	ENST00000318560.5:c.1086-1G>A		p.X362_splice	ENST00000318560	NM_005157.4	362																																																																															
NF1	0	MSKCC	GRCh37	17	29652965	29652969	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAC	AAAAC	-			P-0028629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	88	533	0	ENST00000358273.4:c.4964_4968del	p.Lys1655ArgfsTer5	p.K1655Rfs*5	ENST00000358273	NM_001042492.2	1655	AAAACa/a																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	107	494	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7576919	7576919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	125	629	0	ENST00000269305.4:c.927delC	p.Asn310ThrfsTer35	p.N310Tfs*35	ENST00000269305	NM_001126112.2	309	ccC/cc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591898	48591903	+	inframe_deletion	In_Frame_Del	DEL	TGGACC	TGGACC	-			P-0028630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	93	460	0	ENST00000342988.3:c.1061_1066del	p.Val354_Pro356delinsAla	p.V354_P356delinsA	ENST00000342988	NM_005359.5	354	gTGGACCct/gct																																																																														
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	456	704	2	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727111	40727111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	126	574	2	ENST00000373198.4:c.3853G>A	p.Asp1285Asn	p.D1285N	ENST00000373198	NM_133170.3	1285	Gat/Aat																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849818	156849818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	237	494	0	ENST00000524377.1:c.2074C>T	p.Arg692Cys	p.R692C	ENST00000524377	NM_002529.3	692	Cgc/Tgc																																																																														
WT1	0	MSKCC	GRCh37	11	32439161	32439161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	77	535	1	ENST00000332351.3:c.912G>A	p.Met304Ile	p.M304I	ENST00000332351	NM_024426.4	304	atG/atA																																																																														
ATRX	0	MSKCC	GRCh37	X	76814253	76814253	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	35	435	2	ENST00000373344.5:c.6391C>T	p.Arg2131Ter	p.R2131*	ENST00000373344	NM_000489.3	2131	Cga/Tga																																																																														
ATRX	0	MSKCC	GRCh37	X	76940000	76940000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	63	626	2	ENST00000373344.5:c.748C>T	p.Arg250Ter	p.R250*	ENST00000373344	NM_000489.3	250	Cga/Tga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8376071	8376071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	97	329	1	ENST00000356435.5:c.4526G>A	p.Arg1509Lys	p.R1509K	ENST00000356435		1509	aGa/aAa																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932047	36932047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146617729		P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	114	611	0	ENST00000361632.4:c.2422G>A	p.Glu808Lys	p.E808K	ENST00000361632		808	Gag/Aag																																																																														
NF1	0	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	86	425	0	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																																																														
TRAF2	0	MSKCC	GRCh37	9	139802558	139802558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	158	649	0	ENST00000247668.2:c.403G>A	p.Glu135Lys	p.E135K	ENST00000247668	NM_021138.3	135	Gaa/Aaa																																																																														
SPEN	0	MSKCC	GRCh37	1	16255076	16255076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	128	494	0	ENST00000375759.3:c.2341C>T	p.Arg781Cys	p.R781C	ENST00000375759	NM_015001.2	781	Cgt/Tgt																																																																														
PREX2	0	MSKCC	GRCh37	8	68992737	68992737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200411060		P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	74	577	1	ENST00000288368.4:c.1702G>A	p.Glu568Lys	p.E568K	ENST00000288368	NM_024870.2	568	Gaa/Aaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9523279	9523279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	113	588	1	ENST00000353224.5:c.1958G>A	p.Arg653Gln	p.R653Q	ENST00000353224	NM_177990.2	653	cGg/cAg																																																																														
SPEN	0	MSKCC	GRCh37	1	16262225	16262225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	67	278	0	ENST00000375759.3:c.9490C>T	p.Leu3164Phe	p.L3164F	ENST00000375759	NM_015001.2	3164	Ctt/Ttt																																																																														
CSF3R	0	MSKCC	GRCh37	1	36933540	36933540	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3917997		P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	174	682	0	ENST00000361632.4:c.1747C>T	p.Arg583Cys	p.R583C	ENST00000361632		583	Cgt/Tgt																																																																														
SMAD2	0	MSKCC	GRCh37	18	45371780	45371780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	79	498	0	ENST00000262160.6:c.1211C>T	p.Ala404Val	p.A404V	ENST00000262160	NM_005901.5	404	gCc/gTc																																																																														
SMYD3	0	MSKCC	GRCh37	1	245927368	245927368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	151	517	2	ENST00000388985.4:c.1160C>T	p.Pro387Leu	p.P387L	ENST00000388985		387	cCc/cTc																																																																														
RET	0	MSKCC	GRCh37	10	43615585	43615585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	112	585	0	ENST00000355710.3:c.2664G>A	p.Met888Ile	p.M888I	ENST00000355710	NM_020975.4	888	atG/atA																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18649031	18649031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	42	355	0	ENST00000266497.5:c.2706G>T	p.Leu902Phe	p.L902F	ENST00000266497		902	ttG/ttT																																																																														
FLT3	0	MSKCC	GRCh37	13	28624268	28624268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	111	563	0	ENST00000241453.7:c.706G>A	p.Glu236Lys	p.E236K	ENST00000241453	NM_004119.2	236	Gaa/Aaa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41256143	41256143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	134	517	0	ENST00000357654.3:c.437C>T	p.Ser146Phe	p.S146F	ENST00000357654	NM_007294.3	146	tCc/tTc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5208321	5208321	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	176	691	0	ENST00000357368.4:c.5569A>G	p.Ile1857Val	p.I1857V	ENST00000357368	NM_002850.3	1857	Atc/Gtc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99193476	99193476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	136	564	0	ENST00000074304.5:c.2671C>T	p.Arg891Trp	p.R891W	ENST00000074304	NM_001134224.1	891	Cgg/Tgg																																																																														
ERCC3	0	MSKCC	GRCh37	2	128044360	128044360	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	125	638	0	ENST00000285398.2:c.1261T>C	p.Trp421Arg	p.W421R	ENST00000285398	NM_000122.1	421	Tgg/Cgg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198288680	198288680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	24	474	0	ENST00000335508.6:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000335508	NM_012433.2	16	cGa/cAa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31019413	31019413	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs146637943		P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	121	482	1	ENST00000375687.4:c.910A>T	p.Ser304Cys	p.S304C	ENST00000375687	NM_015338.5	304	Agc/Tgc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730801	40730801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	102	596	0	ENST00000373198.4:c.3734G>A	p.Gly1245Glu	p.G1245E	ENST00000373198	NM_133170.3	1245	gGa/gAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743883	40743883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	82	524	0	ENST00000373198.4:c.3112G>A	p.Glu1038Lys	p.E1038K	ENST00000373198	NM_133170.3	1038	Gag/Aag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920319	1920319	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	207	672	0	ENST00000382891.5:c.1379T>A	p.Phe460Tyr	p.F460Y	ENST00000382891	NM_133335.3	460	tTt/tAt																																																																														
RICTOR	0	MSKCC	GRCh37	5	38967526	38967526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	57	342	0	ENST00000357387.3:c.1064C>A	p.Pro355Gln	p.P355Q	ENST00000357387	NM_152756.3	355	cCa/cAa																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26046032	26046032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	107	293	0	ENST00000540144.1:c.394C>T	p.Arg132Cys	p.R132C	ENST00000540144	NM_003531.2	132	Cgt/Tgt																																																																														
DAXX	0	MSKCC	GRCh37	6	33289110	33289110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	348	599	0	ENST00000374542.5:c.442G>T	p.Ala148Ser	p.A148S	ENST00000374542	NM_001141970.1	148	Gcc/Tcc																																																																														
ROS1	0	MSKCC	GRCh37	6	117708124	117708124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	56	510	0	ENST00000368508.3:c.2053G>A	p.Gly685Arg	p.G685R	ENST00000368508	NM_002944.2	685	Ggg/Agg																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138196106	138196106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	21	385	0	ENST00000237289.4:c.420C>A	p.Phe140Leu	p.F140L	ENST00000237289	NM_001270507.1	140	ttC/ttA																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509861	106509861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	149	663	2	ENST00000359195.3:c.1855C>T	p.Gln619Ter	p.Q619*	ENST00000359195	NM_002649.2	619	Caa/Taa																																																																														
ABL1	0	MSKCC	GRCh37	9	133738319	133738319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	108	483	0	ENST00000318560.5:c.719C>G	p.Thr240Arg	p.T240R	ENST00000318560	NM_005157.4	240	aCg/aGg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226141	53226141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	53	606	0	ENST00000375401.3:c.2708C>T	p.Ser903Phe	p.S903F	ENST00000375401	NM_004187.3	903	tCc/tTc																																																																														
MED12	0	MSKCC	GRCh37	X	70354285	70354285	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	110	704	1	ENST00000374080.3:c.4696A>G	p.Ile1566Val	p.I1566V	ENST00000374080		1566	Atc/Gtc																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	218	450	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	93	289	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0028632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	8	317	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735503	40735503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	70	387	1	ENST00000373198.4:c.3370G>A	p.Glu1124Lys	p.E1124K	ENST00000373198	NM_133170.3	1124	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577137	7577137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	98	357	1	ENST00000269305.4:c.801del	p.Asn268ThrfsTer77	p.N268Tfs*77	ENST00000269305	NM_001126112.2	267	cgG/cg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873587	151873588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	142	343	0	ENST00000262189.6:c.8950dup	p.Ser2984PhefsTer18	p.S2984Ffs*18	ENST00000262189	NM_170606.2	2984	tct/tTct																																																																														
TAP2	0	MSKCC	GRCh37	6	32797706	32797706	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0028632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	146	352	0	ENST00000374899.4:c.1795+1del		p.X599_splice	ENST00000374899	NM_018833.2	599																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	144	503	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MED12	0	MSKCC	GRCh37	X	70361160	70361160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	19	252	0	ENST00000374080.3:c.6348C>A	p.His2116Gln	p.H2116Q	ENST00000374080		2116	caC/caA																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	84	257	0	ENST00000304494.5:c.281T>A	p.Leu94Gln	p.L94Q	ENST00000304494	NM_000077.4	94	cTg/cAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	84	257	0	ENST00000304494.5:c.281T>A	p.Leu94Gln	p.L94Q	ENST00000304494	NM_000077.4	94	cTg/cAg																																																																														
PREX2	0	MSKCC	GRCh37	8	69104642	69104642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	69	513	0	ENST00000288368.4:c.4486G>A	p.Ala1496Thr	p.A1496T	ENST00000288368	NM_024870.2	1496	Gct/Act																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120466326	120466326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	102	401	2	ENST00000256646.2:c.4793C>T	p.Ala1598Val	p.A1598V	ENST00000256646	NM_024408.3	1598	gCt/gTt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786134	3786134	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	56	561	0	ENST00000262367.5:c.4631T>G	p.Phe1544Cys	p.F1544C	ENST00000262367	NM_004380.2	1544	tTc/tGc																																																																														
CIC	0	MSKCC	GRCh37	19	42795423	42795423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	51	439	0	ENST00000575354.2:c.2503C>A	p.Gln835Lys	p.Q835K	ENST00000575354	NM_015125.3	835	Cag/Aag																																																																														
POLD1	0	MSKCC	GRCh37	19	50902158	50902158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	55	497	0	ENST00000440232.2:c.50G>A	p.Arg17Gln	p.R17Q	ENST00000440232	NM_002691.3	17	cGg/cAg																																																																														
EP300	0	MSKCC	GRCh37	22	41569662	41569662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	47	254	0	ENST00000263253.7:c.4653G>T	p.Lys1551Asn	p.K1551N	ENST00000263253	NM_001429.3	1551	aaG/aaT																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670622	134670622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	46	526	2	ENST00000398015.3:c.533A>G	p.Gln178Arg	p.Q178R	ENST00000398015	NM_004441.4	178	cAg/cGg																																																																														
LATS1	0	MSKCC	GRCh37	6	150005134	150005134	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	131	373	1	ENST00000253339.5:c.1091del	p.Pro364LeufsTer5	p.P364Lfs*5	ENST00000253339		364	cCt/ct																																																																														
HGF	0	MSKCC	GRCh37	7	81381519	81381519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	89	338	0	ENST00000222390.5:c.542G>C	p.Arg181Pro	p.R181P	ENST00000222390	NM_000601.4	181	cGa/cCa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139411787	139411787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	128	575	1	ENST00000277541.6:c.1492C>T	p.Pro498Ser	p.P498S	ENST00000277541	NM_017617.3	498	Ccc/Tcc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925523	114925523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	332	450	0	ENST00000543371.1:c.1601C>T	p.Pro534Leu	p.P534L	ENST00000543371	NM_001198531.1	534	cCg/cTg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938390	44938390	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	211	399	0	ENST00000377967.4:c.2939-1G>A		p.X980_splice	ENST00000377967	NM_021140.2	980																																																																															
KMT2C	0	MSKCC	GRCh37	7	151873483	151873483	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	514	478	0	ENST00000262189.6:c.9055C>T	p.Gln3019Ter	p.Q3019*	ENST00000262189	NM_170606.2	3019	Cag/Tag																																																																														
PGR	0	MSKCC	GRCh37	11	100998645	100998645	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	91	431	0	ENST00000325455.5:c.1157A>C	p.Lys386Thr	p.K386T	ENST00000325455	NM_001202474.3	386	aAg/aCg																																																																														
YAP1	0	MSKCC	GRCh37	11	102076717	102076717	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs112417656		P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	146	448	0	ENST00000282441.5:c.896A>G	p.Asn299Ser	p.N299S	ENST00000282441	NM_001130145.2	299	aAc/aGc																																																																														
CDH1	0	MSKCC	GRCh37	16	68857433	68857433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	179	548	0	ENST00000261769.5:c.2068G>A	p.Gly690Arg	p.G690R	ENST00000261769	NM_004360.3	690	Ggg/Agg																																																																														
MALT1	0	MSKCC	GRCh37	18	56414829	56414829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	196	519	0	ENST00000348428.3:c.2230T>C	p.Ser744Pro	p.S744P	ENST00000348428	NM_006785.3	744	Tca/Cca																																																																														
JAK3	0	MSKCC	GRCh37	19	17937710	17937710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200580168		P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	146	407	0	ENST00000458235.1:c.3217C>T	p.Leu1073Phe	p.L1073F	ENST00000458235	NM_000215.3	1073	Ctc/Ttc																																																																														
MSH2	0	MSKCC	GRCh37	2	47693810	47693813	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	98	315	0	ENST00000233146.2:c.1526_1529del	p.Lys509ArgfsTer16	p.K509Rfs*16	ENST00000233146	NM_000251.2	508	ggCAAA/gg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46279802	46279802	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	102	363	0	ENST00000371998.3:c.3728T>A	p.Val1243Glu	p.V1243E	ENST00000371998		1243	gTg/gAg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41267311	41267311	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	102	323	0	ENST00000349496.5:c.895G>C	p.Asp299His	p.D299H	ENST00000349496	NM_001904.3	299	Gac/Cac																																																																														
TET2	0	MSKCC	GRCh37	4	106156252	106156252	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	106	337	0	ENST00000380013.4:c.1153T>G	p.Ser385Ala	p.S385A	ENST00000380013	NM_001127208.2	385	Tca/Gca																																																																														
PMS2	0	MSKCC	GRCh37	7	6029442	6029442	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	101	426	0	ENST00000265849.7:c.1133T>C	p.Leu378Pro	p.L378P	ENST00000265849	NM_000535.5	378	cTg/cCg																																																																														
XRCC2	0	MSKCC	GRCh37	7	152346255	152346255	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	293	510	0	ENST00000359321.1:c.315A>C	p.Glu105Asp	p.E105D	ENST00000359321	NM_005431.1	105	gaA/gaC																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341196	8341196	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	108	393	0	ENST00000356435.5:c.5020del	p.Arg1674AlafsTer21	p.R1674Afs*21	ENST00000356435		1674	Cgc/gc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	138	454	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	46	371	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	246	521	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	89	498	5	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	93	432	2	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																														
CARD11	0	MSKCC	GRCh37	7	2968266	2968266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	151	647	0	ENST00000396946.4:c.1720G>A	p.Val574Ile	p.V574I	ENST00000396946	NM_032415.4	574	Gtc/Atc																																																																														
ERRFI1	54206	MSKCC	GRCh37	1	8073804	8073804	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	32	296	1	ENST00000377482.5:c.855del	p.Arg286GlufsTer9	p.R286Efs*9	ENST00000377482	NM_018948.3	285	ccC/cc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739109	40739109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	43	501	0	ENST00000373198.4:c.3175C>T	p.Arg1059Trp	p.R1059W	ENST00000373198	NM_133170.3	1059	Cgg/Tgg																																																																														
CASP8	0	MSKCC	GRCh37	2	202137360	202137360	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	53	354	0	ENST00000358485.4:c.589-1G>T		p.X197_splice	ENST00000358485	NM_001080125.1	197																																																																															
SDHB	0	MSKCC	GRCh37	1	17354304	17354306	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	70	449	0	ENST00000375499.3:c.478_480del	p.Lys160del	p.K160del	ENST00000375499	NM_003000.2	160	AAG/-																																																																														
SOS1	0	MSKCC	GRCh37	2	39213243	39213243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	153	823	4	ENST00000402219.2:c.3724del	p.Ser1242ValfsTer37	p.S1242Vfs*37	ENST00000402219	NM_005633.3	1242	Agt/gt																																																																														
AGO2	0	MSKCC	GRCh37	8	141572597	141572597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1928	123	541	0	ENST00000220592.5:c.473C>T	p.Thr158Met	p.T158M	ENST00000220592	NM_012154.3	158	aCg/aTg																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88677064	88677064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	98	526	0	ENST00000372037.3:c.849G>A	p.Met283Ile	p.M283I	ENST00000372037	NM_004329.2	283	atG/atA																																																																														
FGF4	0	MSKCC	GRCh37	11	69589791	69589791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	26	32	2	ENST00000168712.1:c.62C>T	p.Ala21Val	p.A21V	ENST00000168712	NM_002007.2	21	gCg/gTg																																																																														
ATM	0	MSKCC	GRCh37	11	108142124	108142124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	57	431	0	ENST00000278616.4:c.3068G>T	p.Gly1023Val	p.G1023V	ENST00000278616	NM_000051.3	1023	gGa/gTa																																																																														
IGF1R	0	MSKCC	GRCh37	15	99500606	99500606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	50	394	0	ENST00000268035.6:c.4039G>A	p.Ala1347Thr	p.A1347T	ENST00000268035	NM_000875.3	1347	Gcc/Acc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832455	72832455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	25	378	0	ENST00000268489.5:c.4126G>A	p.Ala1376Thr	p.A1376T	ENST00000268489	NM_006885.3	1376	Gcc/Acc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991926	72991926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	102	492	0	ENST00000268489.5:c.2119G>A	p.Gly707Arg	p.G707R	ENST00000268489	NM_006885.3	707	Ggg/Agg																																																																														
MYCN	0	MSKCC	GRCh37	2	16085821	16085821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	65	538	0	ENST00000281043.3:c.997G>A	p.Ala333Thr	p.A333T	ENST00000281043	NM_005378.4	333	Gcc/Acc																																																																														
FAT1	0	MSKCC	GRCh37	4	187629406	187629406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	132	713	1	ENST00000441802.2:c.1576G>T	p.Asp526Tyr	p.D526Y	ENST00000441802	NM_005245.3	526	Gac/Tac																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778195	27778195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	85	623	0	ENST00000369163.2:c.344C>T	p.Ala115Val	p.A115V	ENST00000369163	NM_003536.2	115	gCc/gTc																																																																														
FYN	0	MSKCC	GRCh37	6	112041014	112041014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	68	371	1	ENST00000368678.4:c.241G>A	p.Gly81Arg	p.G81R	ENST00000368678		81	Gga/Aga																																																																														
EGFR	0	MSKCC	GRCh37	7	55240773	55240773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	72	757	0	ENST00000275493.2:c.2017A>G	p.Ile673Val	p.I673V	ENST00000275493	NM_005228.3	673	Atc/Gtc																																																																														
SMO	0	MSKCC	GRCh37	7	128846323	128846323	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	79	587	0	ENST00000249373.3:c.1159A>G	p.Ser387Gly	p.S387G	ENST00000249373	NM_005631.4	387	Agt/Ggt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151848067	151848067	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	44	315	0	ENST00000262189.6:c.12692T>C	p.Val4231Ala	p.V4231A	ENST00000262189	NM_170606.2	4231	gTa/gCa																																																																														
ABL1	0	MSKCC	GRCh37	9	133759564	133759564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	86	697	0	ENST00000318560.5:c.1887G>T	p.Glu629Asp	p.E629D	ENST00000318560	NM_005157.4	629	gaG/gaT																																																																														
EGFR	0	MSKCC	GRCh37	7	55249068	55249068	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	11	585	0	ENST00000275493.2:c.2366del	p.Ile789ThrfsTer37	p.I789Tfs*37	ENST00000275493	NM_005228.3	789	aTc/ac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0029935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	156	285	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	264	591	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099352	27099353	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	256	545	0	ENST00000324856.7:c.3591dup	p.Thr1198HisfsTer22	p.T1198Hfs*22	ENST00000324856	NM_006015.4	1197	tcc/tCcc																																																																														
CDK12	0	MSKCC	GRCh37	17	37667867	37667867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	107	414	0	ENST00000447079.4:c.2752G>T	p.Asp918Tyr	p.D918Y	ENST00000447079	NM_015083.1	918	Gat/Tat																																																																														
RTEL1	0	MSKCC	GRCh37	20	62322264	62322264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	127	745	0	ENST00000508582.2:c.2592C>A	p.His864Gln	p.H864Q	ENST00000508582		864	caC/caA																																																																														
BTK	0	MSKCC	GRCh37	X	100617593	100617593	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	216	649	0	ENST00000308731.7:c.476C>G	p.Ala159Gly	p.A159G	ENST00000308731	NM_000061.2	159	gCc/gGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577527	7577528	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAA			P-0029939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	234	630	0	ENST00000269305.4:c.753_754insTTC	p.Ile251_Leu252insPhe	p.I251_L252insF	ENST00000269305	NM_001126112.2	251	-/TTC																																																																														
IGF1R	0	MSKCC	GRCh37	15	99251243	99251243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	140	491	0	ENST00000268035.6:c.547C>T	p.Pro183Ser	p.P183S	ENST00000268035	NM_000875.3	183	Cca/Tca																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45651316	45651316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	51	457	0	ENST00000407780.3:c.709G>A	p.Gly237Arg	p.G237R	ENST00000407780	NM_001283052.1	237	Gga/Aga																																																																														
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	104	311	0	ENST00000288602.6:c.1780G>C	p.Asp594His	p.D594H	ENST00000288602	NM_004333.4	594	Gat/Cat																																																																														
ARID5B	0	MSKCC	GRCh37	10	63819019	63819019	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	32	239	0	ENST00000279873.7:c.1066T>G	p.Phe356Val	p.F356V	ENST00000279873	NM_032199.2	356	Ttt/Gtt																																																																														
CDK12	0	MSKCC	GRCh37	17	37627731	37627731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	324	577	0	ENST00000447079.4:c.1646C>G	p.Pro549Arg	p.P549R	ENST00000447079	NM_015083.1	549	cCc/cGc																																																																														
CEBPA	0	MSKCC	GRCh37	19	33793308	33793308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	38	103	0	ENST00000498907.2:c.13G>A	p.Asp5Asn	p.D5N	ENST00000498907	NM_004364.3	5	Gac/Aac																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024264	31024271	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGGAC	CACAGGAC	-			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	60	486	0	ENST00000375687.4:c.3749_3756del	p.Ser1250Ter	p.S1250*	ENST00000375687	NM_015338.5	1250	tCACAGGAC/t																																																																														
PTPRT	0	MSKCC	GRCh37	20	41514570	41514570	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	160	301	0	ENST00000373198.4:c.91G>T	p.Gly31Cys	p.G31C	ENST00000373198	NM_133170.3	31	Ggc/Tgc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874952	151874952	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0029943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	29	246	0	ENST00000262189.6:c.7586C>G	p.Ser2529Ter	p.S2529*	ENST00000262189	NM_170606.2	2529	tCa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	624	337	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RASA1	0	MSKCC	GRCh37	5	86675622	86675622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	82	313	0	ENST00000274376.6:c.2558C>T	p.Ser853Leu	p.S853L	ENST00000274376	NM_002890.2	853	tCa/tTa																																																																														
XPO1	0	MSKCC	GRCh37	2	61720134	61720134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	93	388	0	ENST00000401558.2:c.1300G>C	p.Glu434Gln	p.E434Q	ENST00000401558	NM_003400.3	434	Gag/Cag																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66735666	66735666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	94	346	0	ENST00000307102.5:c.487G>A	p.Glu163Lys	p.E163K	ENST00000307102	NM_002755.3	163	Gaa/Aaa																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031997	26031997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	70	264	0	ENST00000244661.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000244661	NM_003537.3	98	Gag/Aag																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27777996	27777996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	104	286	0	ENST00000369163.2:c.145C>G	p.Leu49Val	p.L49V	ENST00000369163	NM_003536.2	49	Ctc/Gtc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45795017	45795017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	116	431	0	ENST00000372115.3:c.1569C>G	p.Ile523Met	p.I523M	ENST00000372115	NM_001048171.1	523	atC/atG																																																																														
CSDE1	0	MSKCC	GRCh37	1	115284252	115284252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	93	398	1	ENST00000438362.2:c.34C>T	p.His12Tyr	p.H12Y	ENST00000438362	NM_001242891.1	12	Cat/Tat																																																																														
LMO1	0	MSKCC	GRCh37	11	8251992	8251992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	433	530	2	ENST00000335790.3:c.85C>A	p.Arg29Ser	p.R29S	ENST00000335790	NM_002315.2	29	Cgc/Agc																																																																														
FGF19	0	MSKCC	GRCh37	11	69514302	69514302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	324	462	0	ENST00000294312.3:c.379C>A	p.Arg127Ser	p.R127S	ENST00000294312	NM_005117.2	127	Cgc/Agc																																																																														
PGR	0	MSKCC	GRCh37	11	100962529	100962529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	314	373	0	ENST00000325455.5:c.1868G>T	p.Arg623Leu	p.R623L	ENST00000325455	NM_001202474.3	623	cGc/cTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424087	49424087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	684	641	0	ENST00000301067.7:c.13975C>G	p.Arg4659Gly	p.R4659G	ENST00000301067	NM_003482.3	4659	Cgg/Ggg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435766	110435766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	26	117	0	ENST00000375856.3:c.2635G>C	p.Gly879Arg	p.G879R	ENST00000375856	NM_003749.2	879	Ggc/Cgc																																																																														
MGA	0	MSKCC	GRCh37	15	42000362	42000363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	275	342	0	ENST00000219905.7:c.2381_2382insTT	p.Trp795TyrfsTer23	p.W795Yfs*23	ENST00000219905	NM_001164273.1	794	gga/ggTTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577125	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	415	543	1	ENST00000269305.4:c.813_814delinsTT	p.Glu271_Val272delinsAspLeu	p.E271_V272delinsDL	ENST00000269305	NM_001126112.2	271	gaGGtg/gaTTtg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15952254	15952254	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	441	451	0	ENST00000268712.3:c.6441C>A	p.Tyr2147Ter	p.Y2147*	ENST00000268712	NM_006311.3	2147	taC/taA																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288885	15288885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	54	208	0	ENST00000263388.2:c.3854G>A	p.Arg1285His	p.R1285H	ENST00000263388	NM_000435.2	1285	cGt/cAt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210796	36210796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	194	668	0	ENST00000222270.7:c.547G>A	p.Glu183Lys	p.E183K	ENST00000222270	NM_014727.1	183	Gag/Aag																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31376719	31376719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	232	300	0	ENST00000328111.2:c.714G>T	p.Trp238Cys	p.W238C	ENST00000328111	NM_006892.3	238	tgG/tgT																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101188	41101188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	185	420	0	ENST00000373198.4:c.1168C>A	p.Pro390Thr	p.P390T	ENST00000373198	NM_133170.3	390	Cca/Aca																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101197	41101197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	205	406	0	ENST00000373198.4:c.1159G>T	p.Val387Leu	p.V387L	ENST00000373198	NM_133170.3	387	Gta/Tta																																																																														
RHOA	0	MSKCC	GRCh37	3	49405870	49405870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	141	434	0	ENST00000418115.1:c.268G>C	p.Asp90His	p.D90H	ENST00000418115	NM_001664.2	90	Gat/Cat																																																																														
GSK3B	0	MSKCC	GRCh37	3	119634978	119634978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	65	264	0	ENST00000316626.5:c.521C>A	p.Ser174Tyr	p.S174Y	ENST00000316626		174	tCc/tAc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670721	134670721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	213	422	0	ENST00000398015.3:c.632C>A	p.Thr211Lys	p.T211K	ENST00000398015	NM_004441.4	211	aCa/aAa																																																																														
ATR	0	MSKCC	GRCh37	3	142188406	142188406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	61	298	0	ENST00000350721.4:c.6325C>T	p.Arg2109Cys	p.R2109C	ENST00000350721	NM_001184.3	2109	Cgc/Tgc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467698	66467698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	155	291	0	ENST00000273854.3:c.571C>G	p.Arg191Gly	p.R191G	ENST00000273854	NM_004439.5	191	Cgt/Ggt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153253754	153253754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	142	251	0	ENST00000281708.4:c.979G>A	p.Glu327Lys	p.E327K	ENST00000281708	NM_033632.3	327	Gaa/Aaa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176517454	176517461	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTGCGT	CTGTGCGT	-			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	284	507	0	ENST00000292408.4:c.161_168del	p.Arg54LeufsTer5	p.R54Lfs*5	ENST00000292408	NM_213647.1	52	cCTGTGCGT/c																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341782	8341782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	234	470	0	ENST00000356435.5:c.4858G>C	p.Val1620Leu	p.V1620L	ENST00000356435		1620	Gtg/Ctg																																																																														
AMER1	0	MSKCC	GRCh37	X	63413103	63413103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	265	484	1	ENST00000330258.3:c.64G>A	p.Glu22Lys	p.E22K	ENST00000330258	NM_152424.3	22	Gaa/Aaa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098857	178098857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	92	543	0	ENST00000397062.3:c.188A>G	p.Gln63Arg	p.Q63R	ENST00000397062	NM_006164.4	63	cAa/cGa																																																																														
SRC	0	MSKCC	GRCh37	20	36030050	36030050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	226	578	1	ENST00000358208.4:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000358208		362	cGg/cAg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807587	1807587	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	265	754	2	ENST00000260795.2:c.1756G>T	p.Glu586Ter	p.E586*	ENST00000260795		586	Gag/Tag																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522612	176522615	+	frameshift_variant	Frame_Shift_Del	DEL	CCGA	CCGA	-			P-0029949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	115	712	0	ENST00000292408.4:c.1711_1714del	p.Asp571SerfsTer49	p.D571Sfs*49	ENST00000292408	NM_213647.1	570	cCCGAc/cc																																																																														
ROS1	0	MSKCC	GRCh37	6	117681138	117681138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	121	380	0	ENST00000368508.3:c.3482G>A	p.Gly1161Asp	p.G1161D	ENST00000368508	NM_002944.2	1161	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	204	435	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	314	726	1	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																														
ARID2	0	MSKCC	GRCh37	12	46245316	46245316	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	207	418	0	ENST00000334344.6:c.3410C>A	p.Ser1137Ter	p.S1137*	ENST00000334344	NM_152641.2	1137	tCa/tAa																																																																														
SOX9	0	MSKCC	GRCh37	17	70119075	70119075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	178	410	0	ENST00000245479.2:c.647C>A	p.Ser216Tyr	p.S216Y	ENST00000245479	NM_000346.3	216	tCc/tAc																																																																														
XIAP	0	MSKCC	GRCh37	X	123020205	123020205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	130	572	1	ENST00000355640.3:c.693G>T	p.Leu231Phe	p.L231F	ENST00000355640		231	ttG/ttT																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430019	78430019	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	19	292	0	ENST00000370768.2:c.860T>G	p.Val287Gly	p.V287G	ENST00000370768	NM_003902.3	287	gTt/gGt																																																																														
RET	0	MSKCC	GRCh37	10	43623712	43623712	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	180	420	0	ENST00000355710.3:c.3340A>C	p.Ser1114Arg	p.S1114R	ENST00000355710	NM_020975.4	1114	Agt/Cgt																																																																														
ATM	0	MSKCC	GRCh37	11	108141987	108141987	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	237	439	0	ENST00000278616.4:c.2931T>G	p.Cys977Trp	p.C977W	ENST00000278616	NM_000051.3	977	tgT/tgG																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871173	12871173	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	117	245	0	ENST00000228872.4:c.400A>T	p.Lys134Ter	p.K134*	ENST00000228872	NM_004064.3	134	Aag/Tag																																																																														
DICER1	0	MSKCC	GRCh37	14	95562533	95562534	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	324	343	0	ENST00000343455.3:c.4723_4724delinsTT	p.Gly1575Leu	p.G1575L	ENST00000343455	NM_177438.2	1575	GGg/TTg																																																																														
SOS1	0	MSKCC	GRCh37	2	39213251	39213251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	319	687	1	ENST00000402219.2:c.3716G>T	p.Gly1239Val	p.G1239V	ENST00000402219	NM_005633.3	1239	gGc/gTc																																																																														
SOS1	0	MSKCC	GRCh37	2	39278291	39278291	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	277	489	0	ENST00000402219.2:c.858A>T	p.Leu286Phe	p.L286F	ENST00000402219	NM_005633.3	286	ttA/ttT																																																																														
INPP4A	0	MSKCC	GRCh37	2	99189287	99189287	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	183	356	0	ENST00000074304.5:c.2544del	p.Ser849LeufsTer58	p.S849Lfs*58	ENST00000074304	NM_001134224.1	848	cGg/cg																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27840057	27840057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	167	301	0	ENST00000328488.2:c.37G>A	p.Gly13Ser	p.G13S	ENST00000328488	NM_003533.2	13	Ggc/Agc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157525130	157525130	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	52	173	0	ENST00000346085.5:c.5025G>T	p.Gln1675His	p.Q1675H	ENST00000346085	NM_020732.3	1675	caG/caT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	969	415	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	118	412	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259011	89259011	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	70	176	0	ENST00000336596.2:c.157del	p.Glu53LysfsTer30	p.E53Kfs*30	ENST00000336596	NM_005233.5	52	tGg/tg																																																																														
AMER1	0	MSKCC	GRCh37	X	63410853	63410853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	145	557	0	ENST00000330258.3:c.2314G>T	p.Ala772Ser	p.A772S	ENST00000330258	NM_152424.3	772	Gcc/Tcc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533123	63533123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	254	538	0	ENST00000307078.5:c.1771G>T	p.Ala591Ser	p.A591S	ENST00000307078	NM_004655.3	591	Gcc/Tcc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18800901	18800901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	336	409	0	ENST00000266497.5:c.4277G>A	p.Arg1426Gln	p.R1426Q	ENST00000266497		1426	cGa/cAa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462005	120462005	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	261	414	0	ENST00000256646.2:c.5711A>G	p.Asn1904Ser	p.N1904S	ENST00000256646	NM_024408.3	1904	aAt/aGt																																																																														
AKT3	0	MSKCC	GRCh37	1	243809292	243809292	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	114	414	0	ENST00000263826.5:c.332G>T	p.Arg111Met	p.R111M	ENST00000263826	NM_005465.4	111	aGg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	320	603	0	ENST00000269305.4:c.902_903insT	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccTa																																																																														
DNMT1	0	MSKCC	GRCh37	19	10248588	10248588	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	295	586	0	ENST00000340748.4:c.4165A>T	p.Asn1389Tyr	p.N1389Y	ENST00000340748		1389	Aac/Tac																																																																														
POLD1	0	MSKCC	GRCh37	19	50906760	50906760	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201654210		P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	297	595	0	ENST00000440232.2:c.1148C>T	p.Thr383Ile	p.T383I	ENST00000440232	NM_002691.3	383	aCc/aTc																																																																														
BARD1	0	MSKCC	GRCh37	2	215674222	215674222	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	132	557	2	ENST00000260947.4:c.72del	p.Ala25ProfsTer33	p.A25Pfs*33	ENST00000260947	NM_000465.2	24	ccC/cc																																																																														
CARD11	0	MSKCC	GRCh37	7	2978364	2978364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	344	556	0	ENST00000396946.4:c.966G>T	p.Arg322Ser	p.R322S	ENST00000396946	NM_032415.4	322	agG/agT																																																																														
PRDM14	0	MSKCC	GRCh37	8	70980609	70980609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	284	555	0	ENST00000276594.2:c.768G>T	p.Met256Ile	p.M256I	ENST00000276594	NM_024504.3	256	atG/atT																																																																														
ATRX	0	MSKCC	GRCh37	X	76939766	76939766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	140	566	0	ENST00000373344.5:c.982G>C	p.Glu328Gln	p.E328Q	ENST00000373344	NM_000489.3	328	Gaa/Caa																																																																														
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	26	391	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	145	253	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	46	586	0	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																														
ESR1	0	MSKCC	GRCh37	6	152265629	152265629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	95	318	3	ENST00000206249.3:c.1082C>T	p.Ala361Val	p.A361V	ENST00000206249	NM_000125.3	361	gCg/gTg																																																																														
ESR1	0	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	143	538	0	ENST00000206249.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000206249	NM_000125.3	536	cTc/cCc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71021785	71021785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs112795301		P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	97	284	0	ENST00000318789.4:c.1573C>T	p.Arg525Ter	p.R525*	ENST00000318789	NM_032682.5	525	Cga/Tga																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166353	118166353	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	24	352	0	ENST00000369448.3:c.863T>C	p.Leu288Ser	p.L288S	ENST00000369448	NM_017709.3	288	tTg/tCg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097733	27097733	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	46	532	0	ENST00000324856.7:c.3322G>T	p.Glu1108Ter	p.E1108*	ENST00000324856	NM_006015.4	1108	Gaa/Taa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46281743	46281743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	104	558	0	ENST00000371998.3:c.4190G>A	p.Gly1397Asp	p.G1397D	ENST00000371998		1397	gGc/gAc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453398	40453399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs773909918		P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	92	715	0	ENST00000345506.4:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000345506	NM_003152.3	365	-/C																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993730	72993731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	32	429	1	ENST00000268489.5:c.314dup	p.Pro106AlafsTer13	p.P106Afs*13	ENST00000268489	NM_006885.3	105	ccg/ccCg																																																																														
FANCA	0	MSKCC	GRCh37	16	89836659	89836659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	114	681	0	ENST00000389301.3:c.2231C>T	p.Pro744Leu	p.P744L	ENST00000389301	NM_000135.2	744	cCc/cTc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830902	72830903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	60	474	0	ENST00000268489.5:c.5677_5678dup	p.Asp1894GlyfsTer21	p.D1894Gfs*21	ENST00000268489	NM_006885.3	1893	agg/agAGg																																																																														
CTLA4	0	MSKCC	GRCh37	2	204732740	204732741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	59	313	0	ENST00000302823.3:c.81dupT	p.Leu28SerfsTer32	p.L28Sfs*32	ENST00000302823	NM_005214.4	25	-/T																																																																														
JAK1	0	MSKCC	GRCh37	1	65330610	65330611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	37	410	0	ENST00000342505.4:c.1035dupA	p.Leu346ThrfsTer4	p.L346Tfs*4	ENST00000342505	NM_002227.2	345	-/A																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212989590	212989591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	86	264	0	ENST00000342788.4:c.119_120dup	p.Asp41LeufsTer26	p.D41Lfs*26	ENST00000342788	NM_005235.2	40	-/CT																																																																														
IGF2	0	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	112	560	5	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	83	632	2	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																														
BRD4	0	MSKCC	GRCh37	19	15355551	15355552	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	80	502	0	ENST00000263377.2:c.2180dup	p.Lys728GlufsTer91	p.K728Efs*91	ENST00000263377	NM_058243.2	727	aag/aaAg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	63	439	0	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																																																														
BRIP1	0	MSKCC	GRCh37	17	59934482	59934482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	42	381	0	ENST00000259008.2:c.316C>T	p.Arg106Cys	p.R106C	ENST00000259008	NM_032043.2	106	Cgt/Tgt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472442	88472442	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	34	427	0	ENST00000360948.2:c.2113T>C	p.Tyr705His	p.Y705H	ENST00000360948	NM_001012338.2	705	Tac/Cac																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032275	26032275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	18	175	0	ENST00000244661.2:c.14A>T	p.Lys5Ile	p.K5I	ENST00000244661	NM_003537.3	5	aAa/aTa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56176614	56176614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	73	302	0	ENST00000399503.3:c.2164G>T	p.Glu722Ter	p.E722*	ENST00000399503	NM_005921.1	722	Gaa/Taa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	142	587	3	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																														
TET2	0	MSKCC	GRCh37	4	106156935	106156936	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	30	454	0	ENST00000380013.4:c.1842dupG	p.Leu615AlafsTer23	p.L615Afs*23	ENST00000380013	NM_001127208.2	612	-/G																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	190	579	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87563545	87563545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	99	390	0	ENST00000277120.3:c.1933C>T	p.Leu645Phe	p.L645F	ENST00000277120		645	Ctc/Ttc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259119	89259119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	53	346	0	ENST00000336596.2:c.263C>T	p.Pro88Leu	p.P88L	ENST00000336596	NM_005233.5	88	cCc/cTc																																																																														
INHA	0	MSKCC	GRCh37	2	220437353	220437353	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	42	612	0	ENST00000243786.2:c.257T>C	p.Phe86Ser	p.F86S	ENST00000243786	NM_002191.3	86	tTc/tCc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444932	49444933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	91	544	0	ENST00000301067.7:c.2533dup	p.Arg845ProfsTer3	p.R845Pfs*3	ENST00000301067	NM_003482.3	845	cgg/cCgg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81902829	81902829	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	73	403	0	ENST00000359376.3:c.490C>T	p.Arg164Ter	p.R164*	ENST00000359376	NM_002661.3	164	Cga/Tga																																																																														
JAK1	0	MSKCC	GRCh37	1	65339110	65339111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	122	457	1	ENST00000342505.4:c.425dupA	p.Ile143AspfsTer9	p.I143Dfs*9	ENST00000342505	NM_002227.2	142	aag/aaAg																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30326004	30326005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769517721		P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	69	389	0	ENST00000322652.5:c.2208dup	p.Gln737ThrfsTer20	p.Q737Tfs*20	ENST00000322652	NM_015355.2	734	-/A																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741688	17741688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	103	304	0	ENST00000250003.3:c.359G>A	p.Arg120His	p.R120H	ENST00000250003	NM_002478.4	120	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437531	56437531	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	58	537	0	ENST00000407977.2:c.931del	p.Leu311SerfsTer108	p.L311Sfs*108	ENST00000407977		311	Ctc/tc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438703	49438703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	105	579	1	ENST00000301067.7:c.4787G>A	p.Gly1596Asp	p.G1596D	ENST00000301067	NM_003482.3	1596	gGc/gAc																																																																														
CTCF	0	MSKCC	GRCh37	16	67645976	67645976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	57	469	1	ENST00000264010.4:c.904G>A	p.Ala302Thr	p.A302T	ENST00000264010	NM_006565.3	302	Gca/Aca																																																																														
MED12	0	MSKCC	GRCh37	X	70344212	70344212	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	27	303	0	ENST00000374080.3:c.1948G>T	p.Glu650Ter	p.E650*	ENST00000374080		650	Gaa/Taa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602745	10602745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	103	694	0	ENST00000171111.5:c.833C>T	p.Pro278Leu	p.P278L	ENST00000171111	NM_203500.1	278	cCg/cTg																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553714	106553714	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	86	414	0	ENST00000369096.4:c.1679A>G	p.Lys560Arg	p.K560R	ENST00000369096	NM_001198.3	560	aAg/aGg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983295	15983295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	76	375	0	ENST00000268712.3:c.3484C>T	p.Arg1162Trp	p.R1162W	ENST00000268712	NM_006311.3	1162	Cgg/Tgg																																																																														
RAD21	0	MSKCC	GRCh37	8	117868981	117868981	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	36	349	0	ENST00000297338.2:c.718G>T	p.Gly240Cys	p.G240C	ENST00000297338	NM_006265.2	240	Ggt/Tgt																																																																														
POLD1	0	MSKCC	GRCh37	19	50918759	50918759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	168	707	2	ENST00000440232.2:c.2629G>T	p.Asp877Tyr	p.D877Y	ENST00000440232	NM_002691.3	877	Gat/Tat																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851847	134851847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	48	497	1	ENST00000398015.3:c.1253T>C	p.Phe418Ser	p.F418S	ENST00000398015	NM_004441.4	418	tTc/tCc																																																																														
NF2	0	MSKCC	GRCh37	22	30057282	30057282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	40	467	0	ENST00000338641.4:c.764C>T	p.Ser255Phe	p.S255F	ENST00000338641	NM_000268.3	255	tCc/tTc																																																																														
E2F3	0	MSKCC	GRCh37	6	20481473	20481473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138776759		P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	90	286	0	ENST00000346618.3:c.542C>T	p.Thr181Met	p.T181M	ENST00000346618	NM_001949.4	181	aCg/aTg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121416717	121416717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	146	654	0	ENST00000257555.6:c.146C>A	p.Ser49Tyr	p.S49Y	ENST00000257555		49	tCc/tAc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103525619	103525619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	31	267	0	ENST00000355739.4:c.2890C>T	p.Arg964Trp	p.R964W	ENST00000355739	NM_000123.3	964	Cgg/Tgg																																																																														
ATM	0	MSKCC	GRCh37	11	108122581	108122581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	38	383	0	ENST00000278616.4:c.1625T>C	p.Leu542Ser	p.L542S	ENST00000278616	NM_000051.3	542	tTg/tCg																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2492119	2492119	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	35	633	0	ENST00000355716.4:c.517A>G	p.Asn173Asp	p.N173D	ENST00000355716	NM_003820.2	173	Aat/Gat																																																																														
MTOR	0	MSKCC	GRCh37	1	11314023	11314023	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	36	443	0	ENST00000361445.4:c.713T>C	p.Phe238Ser	p.F238S	ENST00000361445	NM_004958.3	238	tTt/tCt																																																																														
SPEN	0	MSKCC	GRCh37	1	16255782	16255783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	33	396	0	ENST00000375759.3:c.3053dup	p.Gln1019AlafsTer3	p.Q1019Afs*3	ENST00000375759	NM_015001.2	1016	tca/tcAa																																																																														
SDHB	0	MSKCC	GRCh37	1	17349135	17349135	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	32	500	0	ENST00000375499.3:c.733A>C	p.Thr245Pro	p.T245P	ENST00000375499	NM_003000.2	245	Acc/Ccc																																																																														
SDHB	0	MSKCC	GRCh37	1	17359570	17359570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	78	414	0	ENST00000375499.3:c.271A>G	p.Arg91Gly	p.R91G	ENST00000375499	NM_003000.2	91	Aga/Gga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092946	27092946	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	48	343	0	ENST00000324856.7:c.2879-2A>G		p.X960_splice	ENST00000324856	NM_006015.4	960																																																																															
ARID1A	0	MSKCC	GRCh37	1	27099407	27099407	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	88	511	0	ENST00000324856.7:c.3644T>C	p.Met1215Thr	p.M1215T	ENST00000324856	NM_006015.4	1215	aTg/aCg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	87	448	0	ENST00000324856.7:c.3976_3977dup	p.Gln1327ArgfsTer155	p.Q1327Rfs*155	ENST00000324856	NM_006015.4	1324	tac/taCCc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101163	27101163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	78	596	0	ENST00000324856.7:c.4445G>A	p.Gly1482Asp	p.G1482D	ENST00000324856	NM_006015.4	1482	gGc/gAc																																																																														
STK40	0	MSKCC	GRCh37	1	36823947	36823947	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	105	613	0	ENST00000373129.3:c.235G>T	p.Glu79Ter	p.E79*	ENST00000373129	NM_032017.1	79	Gag/Tag																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937233	36937233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	83	519	0	ENST00000361632.4:c.1086G>T	p.Glu362Asp	p.E362D	ENST00000361632		362	gaG/gaT																																																																														
RAD54L	0	MSKCC	GRCh37	1	46739838	46739838	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	89	417	0	ENST00000371975.4:c.1639A>T	p.Met547Leu	p.M547L	ENST00000371975	NM_003579.3	547	Atg/Ttg																																																																														
JAK1	0	MSKCC	GRCh37	1	65310551	65310551	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	58	415	0	ENST00000342505.4:c.2137G>T	p.Gly713Ter	p.G713*	ENST00000342505	NM_002227.2	713	Gga/Tga																																																																														
FUBP1	0	MSKCC	GRCh37	1	78422289	78422289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	133	313	0	ENST00000370768.2:c.1673G>A	p.Gly558Asp	p.G558D	ENST00000370768	NM_003902.3	558	gGt/gAt																																																																														
BCL10	0	MSKCC	GRCh37	1	85733593	85733593	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	72	405	0	ENST00000370580.1:c.419A>G	p.Glu140Gly	p.E140G	ENST00000370580	NM_003921.4	140	gAg/gGg																																																																														
NRAS	0	MSKCC	GRCh37	1	115258765	115258765	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	32	294	0	ENST00000369535.4:c.17T>G	p.Leu6Arg	p.L6R	ENST00000369535	NM_002524.4	6	cTg/cGg																																																																														
CSDE1	0	MSKCC	GRCh37	1	115277099	115277099	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	117	415	0	ENST00000438362.2:c.684A>C	p.Lys228Asn	p.K228N	ENST00000438362	NM_001242891.1	228	aaA/aaC																																																																														
VTCN1	0	MSKCC	GRCh37	1	117695865	117695865	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	188	555	0	ENST00000369458.3:c.572T>C	p.Phe191Ser	p.F191S	ENST00000369458	NM_024626.3	191	tTc/tCc																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699222	117699222	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	70	393	0	ENST00000369458.3:c.419A>G	p.Asn140Ser	p.N140S	ENST00000369458	NM_024626.3	140	aAt/aGt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458516	120458516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	107	480	1	ENST00000256646.2:c.6829G>A	p.Gly2277Ser	p.G2277S	ENST00000256646	NM_024408.3	2277	Ggc/Agc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462183	120462183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	35	435	0	ENST00000256646.2:c.5533A>G	p.Ser1845Gly	p.S1845G	ENST00000256646	NM_024408.3	1845	Agt/Ggt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120510816	120510816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	34	360	0	ENST00000256646.2:c.1148C>A	p.Pro383His	p.P383H	ENST00000256646	NM_024408.3	383	cCt/cAt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156846213	156846213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	28	531	0	ENST00000524377.1:c.1654A>G	p.Ser552Gly	p.S552G	ENST00000524377	NM_002529.3	552	Agt/Ggt																																																																														
IL10	0	MSKCC	GRCh37	1	206945625	206945625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	116	387	0	ENST00000423557.1:c.156G>T	p.Lys52Asn	p.K52N	ENST00000423557	NM_000572.2	52	aaG/aaT																																																																														
IL10	0	MSKCC	GRCh37	1	206945716	206945716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	109	410	0	ENST00000423557.1:c.65A>G	p.Gln22Arg	p.Q22R	ENST00000423557	NM_000572.2	22	cAg/cGg																																																																														
PARP1	0	MSKCC	GRCh37	1	226590025	226590025	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	64	523	0	ENST00000366794.5:c.176A>C	p.Lys59Thr	p.K59T	ENST00000366794	NM_001618.3	59	aAg/aCg																																																																														
FH	0	MSKCC	GRCh37	1	241682928	241682928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	60	311	0	ENST00000366560.3:c.95C>T	p.Ala32Val	p.A32V	ENST00000366560	NM_000143.3	32	gCc/gTc																																																																														
AKT3	0	MSKCC	GRCh37	1	243668572	243668572	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	56	363	0	ENST00000263826.5:c.1419C>A	p.Tyr473Ter	p.Y473*	ENST00000263826	NM_005465.4	473	taC/taA																																																																														
AKT3	0	MSKCC	GRCh37	1	243727092	243727093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	144	432	0	ENST00000263826.5:c.877dup	p.Cys293LeufsTer29	p.C293Lfs*29	ENST00000263826	NM_005465.4	293	tgc/tTgc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851041	63851041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	90	490	0	ENST00000279873.7:c.1819A>G	p.Asn607Asp	p.N607D	ENST00000279873	NM_032199.2	607	Aac/Gac																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851246	63851246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141236035		P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	39	529	0	ENST00000279873.7:c.2024C>T	p.Thr675Met	p.T675M	ENST00000279873	NM_032199.2	675	aCg/aTg																																																																														
TET1	0	MSKCC	GRCh37	10	70333291	70333291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	49	549	0	ENST00000373644.4:c.1196C>T	p.Pro399Leu	p.P399L	ENST00000373644	NM_030625.2	399	cCt/cTt																																																																														
TET1	0	MSKCC	GRCh37	10	70333407	70333407	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	105	675	0	ENST00000373644.4:c.1312A>G	p.Asn438Asp	p.N438D	ENST00000373644	NM_030625.2	438	Aat/Gat																																																																														
TET1	0	MSKCC	GRCh37	10	70405124	70405124	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	52	545	0	ENST00000373644.4:c.2638T>G	p.Leu880Val	p.L880V	ENST00000373644	NM_030625.2	880	Tta/Gta																																																																														
TET1	0	MSKCC	GRCh37	10	70406347	70406347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	70	659	1	ENST00000373644.4:c.3861G>T	p.Gln1287His	p.Q1287H	ENST00000373644	NM_030625.2	1287	caG/caT																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88683249	88683249	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs112883778		P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	164	529	0	ENST00000372037.3:c.1459T>C	p.Trp487Arg	p.W487R	ENST00000372037	NM_004329.2	487	Tgg/Cgg																																																																														
SUFU	0	MSKCC	GRCh37	10	104357050	104357050	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	67	343	0	ENST00000369902.3:c.910G>T	p.Asp304Tyr	p.D304Y	ENST00000369902	NM_016169.3	304	Gac/Tac																																																																														
SHOC2	0	MSKCC	GRCh37	10	112767368	112767368	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	99	430	0	ENST00000369452.4:c.1241T>C	p.Leu414Pro	p.L414P	ENST00000369452	NM_007373.3	414	cTc/cCc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925621	114925622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	72	594	3	ENST00000543371.1:c.1704dup	p.Ser569LeufsTer40	p.S569Lfs*40	ENST00000543371	NM_001198531.1	567	gcc/gCcc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123260378	123260378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	126	475	0	ENST00000358487.5:c.1523C>T	p.Pro508Leu	p.P508L	ENST00000358487	NM_000141.4	508	cCc/cTc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123260400	123260400	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	106	480	0	ENST00000358487.5:c.1501G>T	p.Val501Leu	p.V501L	ENST00000358487	NM_000141.4	501	Gtg/Ttg																																																																														
IGF2	0	MSKCC	GRCh37	11	2161424	2161424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	89	508	0	ENST00000434045.2:c.103T>C	p.Phe35Leu	p.F35L	ENST00000434045	NM_001127598.1	35	Ttt/Ctt																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741720	17741720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	47	395	0	ENST00000250003.3:c.391A>G	p.Thr131Ala	p.T131A	ENST00000250003	NM_002478.4	131	Aca/Gca																																																																														
WT1	0	MSKCC	GRCh37	11	32410623	32410623	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	57	387	0	ENST00000332351.3:c.1535A>G	p.Lys512Arg	p.K512R	ENST00000332351	NM_024426.4	512	aAa/aGa																																																																														
WT1	0	MSKCC	GRCh37	11	32413586	32413586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	36	355	0	ENST00000332351.3:c.1364C>A	p.Thr455Asn	p.T455N	ENST00000332351	NM_024426.4	455	aCt/aAt																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64129350	64129350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	90	557	1	ENST00000334205.4:c.782T>C	p.Phe261Ser	p.F261S	ENST00000334205	NM_003942.2	261	tTc/tCc																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67196626	67196626	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	34	468	0	ENST00000312629.5:c.155A>C	p.Glu52Ala	p.E52A	ENST00000312629	NM_003952.2	52	gAg/gCg																																																																														
FGF19	0	MSKCC	GRCh37	11	69514323	69514323	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	56	377	0	ENST00000294312.3:c.358T>G	p.Cys120Gly	p.C120G	ENST00000294312	NM_005117.2	120	Tgt/Ggt																																																																														
INPPL1	0	MSKCC	GRCh37	11	71941408	71941408	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	41	626	0	ENST00000298229.2:c.1093C>T	p.Arg365Cys	p.R365C	ENST00000298229	NM_001567.3	365	Cgc/Tgc																																																																														
EED	0	MSKCC	GRCh37	11	85967433	85967433	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	59	292	0	ENST00000263360.6:c.431A>G	p.Asp144Gly	p.D144G	ENST00000263360	NM_003797.3	144	gAt/gGt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197307	94197308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	118	405	0	ENST00000323929.3:c.1196dup	p.Arg400GlnfsTer3	p.R400Qfs*3	ENST00000323929	NM_005591.3	399	ttc/ttTc																																																																														
PGR	0	MSKCC	GRCh37	11	100998496	100998496	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	27	303	0	ENST00000325455.5:c.1306del	p.Glu436LysfsTer4	p.E436Kfs*4	ENST00000325455	NM_001202474.3	436	Gaa/aa																																																																														
ATM	0	MSKCC	GRCh37	11	108106478	108106478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	76	251	0	ENST00000278616.4:c.413G>A	p.Gly138Glu	p.G138E	ENST00000278616	NM_000051.3	138	gGa/gAa																																																																														
ATM	0	MSKCC	GRCh37	11	108128286	108128286	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	80	373	0	ENST00000278616.4:c.2329A>G	p.Arg777Gly	p.R777G	ENST00000278616	NM_000051.3	777	Aga/Gga																																																																														
ATM	0	MSKCC	GRCh37	11	108158413	108158413	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	82	418	0	ENST00000278616.4:c.4080T>A	p.Ser1360Arg	p.S1360R	ENST00000278616	NM_000051.3	1360	agT/agA																																																																														
ATM	0	MSKCC	GRCh37	11	108172509	108172510	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	92	288	0	ENST00000278616.4:c.5318dup	p.Phe1774ValfsTer8	p.F1774Vfs*8	ENST00000278616	NM_000051.3	1771	aga/agAa																																																																														
ATM	0	MSKCC	GRCh37	11	108190743	108190743	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	125	448	0	ENST00000278616.4:c.6410A>T	p.Asp2137Val	p.D2137V	ENST00000278616	NM_000051.3	2137	gAc/gTc																																																																														
ATM	0	MSKCC	GRCh37	11	108236109	108236109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	35	498	0	ENST00000278616.4:c.9045G>T	p.Glu3015Asp	p.E3015D	ENST00000278616	NM_000051.3	3015	gaG/gaT																																																																														
KDM5A	0	MSKCC	GRCh37	12	416852	416852	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	31	359	0	ENST00000399788.2:c.3698T>G	p.Leu1233Arg	p.L1233R	ENST00000399788	NM_001042603.1	1233	cTt/cGt																																																																														
KDM5A	0	MSKCC	GRCh37	12	420199	420199	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	39	342	0	ENST00000399788.2:c.3068T>C	p.Leu1023Pro	p.L1023P	ENST00000399788	NM_001042603.1	1023	cTt/cCt																																																																														
KDM5A	0	MSKCC	GRCh37	12	475143	475143	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	52	556	0	ENST00000399788.2:c.494T>G	p.Ile165Ser	p.I165S	ENST00000399788	NM_001042603.1	165	aTt/aGt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18524150	18524150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	67	361	1	ENST00000266497.5:c.1662G>T	p.Arg554Ser	p.R554S	ENST00000266497		554	agG/agT																																																																														
RECQL	0	MSKCC	GRCh37	12	21644584	21644584	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	146	410	0	ENST00000421138.2:c.83T>G	p.Leu28Arg	p.L28R	ENST00000421138		28	cTt/cGt																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944810	31944810	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	74	591	0	ENST00000340398.3:c.291A>C	p.Glu97Asp	p.E97D	ENST00000340398	NM_001013699.2	97	gaA/gaC																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425683	49425683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	46	570	0	ENST00000301067.7:c.12805C>A	p.Pro4269Thr	p.P4269T	ENST00000301067	NM_003482.3	4269	Cca/Aca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427029	49427029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	38	463	0	ENST00000301067.7:c.11459C>T	p.Pro3820Leu	p.P3820L	ENST00000301067	NM_003482.3	3820	cCc/cTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433298	49433298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201336660		P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	79	533	0	ENST00000301067.7:c.8149C>T	p.Pro2717Ser	p.P2717S	ENST00000301067	NM_003482.3	2717	Cca/Tca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434049	49434049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	38	612	0	ENST00000301067.7:c.7504C>T	p.Pro2502Ser	p.P2502S	ENST00000301067	NM_003482.3	2502	Cca/Tca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434180	49434180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	176	783	0	ENST00000301067.7:c.7373A>G	p.Gln2458Arg	p.Q2458R	ENST00000301067	NM_003482.3	2458	cAg/cGg																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50488327	50488327	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	70	434	0	ENST00000394963.4:c.1241A>G	p.Gln414Arg	p.Q414R	ENST00000394963	NM_003076.4	414	cAa/cGa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487280	56487280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	50	458	0	ENST00000267101.3:c.1426G>A	p.Gly476Arg	p.G476R	ENST00000267101	NM_001982.3	476	Ggg/Agg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56490866	56490866	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	68	439	0	ENST00000267101.3:c.2312T>A	p.Ile771Asn	p.I771N	ENST00000267101	NM_001982.3	771	aTt/aAt																																																																														
FLT3	0	MSKCC	GRCh37	13	28602374	28602374	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	120	396	0	ENST00000241453.7:c.1994T>C	p.Met665Thr	p.M665T	ENST00000241453	NM_004119.2	665	aTg/aCg																																																																														
FLT1	0	MSKCC	GRCh37	13	28877388	28877388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	42	384	1	ENST00000282397.4:c.3933C>A	p.His1311Gln	p.H1311Q	ENST00000282397	NM_002019.4	1311	caC/caA																																																																														
FLT1	0	MSKCC	GRCh37	13	28880833	28880833	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	70	571	0	ENST00000282397.4:c.3797A>G	p.Lys1266Arg	p.K1266R	ENST00000282397	NM_002019.4	1266	aAg/aGg																																																																														
FLT1	0	MSKCC	GRCh37	13	28964076	28964077	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	38	390	0	ENST00000282397.4:c.1825dupA	p.Met609AsnfsTer5	p.M609Nfs*5	ENST00000282397	NM_002019.4	609	atg/aAtg																																																																														
FLT1	0	MSKCC	GRCh37	13	28979976	28979976	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	37	506	0	ENST00000282397.4:c.1492A>G	p.Met498Val	p.M498V	ENST00000282397	NM_002019.4	498	Atg/Gtg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913684	32913684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	26	374	0	ENST00000380152.3:c.5192A>G	p.His1731Arg	p.H1731R	ENST00000380152		1731	cAt/cGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914013	32914013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	37	502	0	ENST00000380152.3:c.5521C>T	p.Pro1841Ser	p.P1841S	ENST00000380152		1841	Cca/Tca																																																																														
BRCA2	0	MSKCC	GRCh37	13	32931916	32931916	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	52	317	0	ENST00000380152.3:c.7655T>A	p.Ile2552Asn	p.I2552N	ENST00000380152		2552	aTt/aAt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32954022	32954023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	53	495	0	ENST00000380152.3:c.9096_9097dup	p.Thr3033LysfsTer30	p.T3033Kfs*30	ENST00000380152		3030	aca/acAAa																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281864	49281864	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	57	585	0	ENST00000282018.3:c.911T>A	p.Leu304His	p.L304H	ENST00000282018	NM_020377.2	304	cTc/cAc																																																																														
DIS3	0	MSKCC	GRCh37	13	73342935	73342935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	90	309	0	ENST00000377767.4:c.1871G>T	p.Arg624Met	p.R624M	ENST00000377767	NM_014953.3	624	aGg/aTg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30100088	30100088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	88	606	0	ENST00000331968.5:c.1532C>A	p.Ser511Tyr	p.S511Y	ENST00000331968	NM_002742.2	511	tCc/tAc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061738	38061738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	90	362	0	ENST00000250448.2:c.251G>T	p.Gly84Val	p.G84V	ENST00000250448	NM_004496.3	84	gGc/gTc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061780	38061780	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	43	497	0	ENST00000250448.2:c.209A>T	p.Asn70Ile	p.N70I	ENST00000250448	NM_004496.3	70	aAc/aTc																																																																														
TSHR	0	MSKCC	GRCh37	14	81609633	81609633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	37	622	0	ENST00000298171.2:c.1231A>G	p.Ile411Val	p.I411V	ENST00000298171	NM_000369.2	411	Ata/Gta																																																																														
DICER1	0	MSKCC	GRCh37	14	95570309	95570309	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	61	308	0	ENST00000343455.3:c.3424T>C	p.Ser1142Pro	p.S1142P	ENST00000343455	NM_177438.2	1142	Tct/Cct																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643687	38643688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	190	555	0	ENST00000299084.4:c.1162dup	p.Ser388PhefsTer2	p.S388Ffs*2	ENST00000299084	NM_152594.2	386	gat/gaTt																																																																														
MGA	0	MSKCC	GRCh37	15	41961981	41961981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	38	459	0	ENST00000219905.7:c.889G>T	p.Gly297Cys	p.G297C	ENST00000219905	NM_001164273.1	297	Ggt/Tgt																																																																														
MGA	0	MSKCC	GRCh37	15	41962058	41962058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	36	401	0	ENST00000219905.7:c.966G>T	p.Glu322Asp	p.E322D	ENST00000219905	NM_001164273.1	322	gaG/gaT																																																																														
MGA	0	MSKCC	GRCh37	15	42059461	42059461	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	63	324	0	ENST00000219905.7:c.9181A>G	p.Ser3061Gly	p.S3061G	ENST00000219905	NM_001164273.1	3061	Agt/Ggt																																																																														
CD276	0	MSKCC	GRCh37	15	74000807	74000807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	43	383	0	ENST00000318443.5:c.1497G>T	p.Glu499Asp	p.E499D	ENST00000318443	NM_001024736.1	499	gaG/gaT																																																																														
BLM	0	MSKCC	GRCh37	15	91292971	91292971	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	207	516	0	ENST00000355112.3:c.473A>G	p.Asp158Gly	p.D158G	ENST00000355112	NM_000057.2	158	gAt/gGt																																																																														
BLM	0	MSKCC	GRCh37	15	91298050	91298050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	39	334	1	ENST00000355112.3:c.969G>T	p.Lys323Asn	p.K323N	ENST00000355112	NM_000057.2	323	aaG/aaT																																																																														
NTHL1	0	MSKCC	GRCh37	16	2089996	2089996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	87	691	0	ENST00000219066.1:c.868T>C	p.Cys290Arg	p.C290R	ENST00000219066	NM_002528.5	290	Tgt/Cgt																																																																														
TSC2	0	MSKCC	GRCh37	16	2136198	2136198	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	28	362	0	ENST00000219476.3:c.4667A>T	p.Asn1556Ile	p.N1556I	ENST00000219476	NM_000548.3	1556	aAc/aTc																																																																														
SLX4	0	MSKCC	GRCh37	16	3639794	3639794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	34	621	0	ENST00000294008.3:c.3845T>C	p.Leu1282Pro	p.L1282P	ENST00000294008	NM_032444.2	1282	cTg/cCg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779694	3779694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	144	528	0	ENST00000262367.5:c.5354G>A	p.Cys1785Tyr	p.C1785Y	ENST00000262367	NM_004380.2	1785	tGc/tAc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789585	3789585	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	71	343	1	ENST00000262367.5:c.4274A>G	p.Asn1425Ser	p.N1425S	ENST00000262367	NM_004380.2	1425	aAc/aGc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3860634	3860634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	59	569	0	ENST00000262367.5:c.945G>T	p.Lys315Asn	p.K315N	ENST00000262367	NM_004380.2	315	aaG/aaT																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857574	9857574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	48	374	0	ENST00000330684.3:c.3827C>T	p.Ala1276Val	p.A1276V	ENST00000330684	NM_001134407.1	1276	gCc/gTc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14031664	14031664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	67	395	0	ENST00000311895.7:c.1853G>A	p.Arg618His	p.R618H	ENST00000311895	NM_005236.2	618	cGc/cAc																																																																														
CYLD	0	MSKCC	GRCh37	16	50783694	50783694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	86	534	0	ENST00000398568.2:c.85A>G	p.Ser29Gly	p.S29G	ENST00000398568	NM_001042412.1	29	Agc/Ggc																																																																														
CYLD	0	MSKCC	GRCh37	16	50788282	50788282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	65	540	0	ENST00000398568.2:c.860G>T	p.Ser287Ile	p.S287I	ENST00000398568	NM_001042412.1	287	aGt/aTt																																																																														
CYLD	0	MSKCC	GRCh37	16	50811817	50811817	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	139	457	0	ENST00000398568.2:c.1094A>G	p.Gln365Arg	p.Q365R	ENST00000398568	NM_001042412.1	365	cAa/cGa																																																																														
NUP93	0	MSKCC	GRCh37	16	56857730	56857730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	64	329	0	ENST00000308159.5:c.766A>G	p.Arg256Gly	p.R256G	ENST00000308159	NM_014669.4	256	Agg/Ggg																																																																														
CTCF	0	MSKCC	GRCh37	16	67645382	67645382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	40	399	0	ENST00000264010.4:c.647A>G	p.Glu216Gly	p.E216G	ENST00000264010	NM_006565.3	216	gAg/gGg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831659	72831659	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	57	508	1	ENST00000268489.5:c.4922A>T	p.Asn1641Ile	p.N1641I	ENST00000268489	NM_006885.3	1641	aAc/aTc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81819778	81819778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	99	401	0	ENST00000359376.3:c.184G>A	p.Glu62Lys	p.E62K	ENST00000359376	NM_002661.3	62	Gag/Aag																																																																														
PLCG2	0	MSKCC	GRCh37	16	81972497	81972497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	32	407	0	ENST00000359376.3:c.3290A>G	p.Asn1097Ser	p.N1097S	ENST00000359376	NM_002661.3	1097	aAc/aGc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89352025	89352025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145678880		P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	184	627	3	ENST00000301030.4:c.925G>A	p.Ala309Thr	p.A309T	ENST00000301030	NM_001256183.1	309	Gca/Aca																																																																														
GPS2	0	MSKCC	GRCh37	17	7217234	7217234	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	40	546	0	ENST00000380728.2:c.471A>C	p.Gln157His	p.Q157H	ENST00000380728		157	caA/caC																																																																														
NCOR1	0	MSKCC	GRCh37	17	15942809	15942809	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	129	487	0	ENST00000268712.3:c.6893A>G	p.Asn2298Ser	p.N2298S	ENST00000268712	NM_006311.3	2298	aAc/aGc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16004562	16004562	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	93	282	0	ENST00000268712.3:c.2690+2T>C		p.X897_splice	ENST00000268712	NM_006311.3	897																																																																															
NCOR1	0	MSKCC	GRCh37	17	16089914	16089914	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	92	349	1	ENST00000268712.3:c.196C>T	p.Arg66Ter	p.R66*	ENST00000268712	NM_006311.3	66	Cga/Tga																																																																														
FLCN	0	MSKCC	GRCh37	17	17117165	17117165	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	67	374	0	ENST00000285071.4:c.1544T>C	p.Val515Ala	p.V515A	ENST00000285071	NM_144997.5	515	gTg/gCg																																																																														
FLCN	0	MSKCC	GRCh37	17	17127328	17127328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	74	541	0	ENST00000285071.4:c.526A>G	p.Met176Val	p.M176V	ENST00000285071	NM_144997.5	176	Atg/Gtg																																																																														
NF1	0	MSKCC	GRCh37	17	29533294	29533294	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	44	224	0	ENST00000358273.4:c.1297T>C	p.Tyr433His	p.Y433H	ENST00000358273	NM_001042492.2	433	Tat/Cat																																																																														
NF1	0	MSKCC	GRCh37	17	29556884	29556884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	20	273	0	ENST00000358273.4:c.2882T>C	p.Val961Ala	p.V961A	ENST00000358273	NM_001042492.2	961	gTa/gCa																																																																														
NF1	0	MSKCC	GRCh37	17	29559740	29559741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	83	227	0	ENST00000358273.4:c.3341dup	p.Leu1114PhefsTer3	p.L1114Ffs*3	ENST00000358273	NM_001042492.2	1113	ctt/cTtt																																																																														
NF1	0	MSKCC	GRCh37	17	29592335	29592336	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	138	439	0	ENST00000358273.4:c.4819dup	p.Tyr1607LeufsTer15	p.Y1607Lfs*15	ENST00000358273	NM_001042492.2	1605	att/aTtt																																																																														
NF1	0	MSKCC	GRCh37	17	29687569	29687569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	40	423	0	ENST00000358273.4:c.8225A>G	p.Tyr2742Cys	p.Y2742C	ENST00000358273	NM_001042492.2	2742	tAc/tGc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881139	37881139	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	42	526	0	ENST00000269571.5:c.2468T>C	p.Leu823Pro	p.L823P	ENST00000269571		823	cTg/cCg																																																																														
RARA	0	MSKCC	GRCh37	17	38487511	38487511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	42	441	1	ENST00000254066.5:c.41G>A	p.Gly14Glu	p.G14E	ENST00000254066	NM_000964.3	14	gGg/gAg																																																																														
EZH1	0	MSKCC	GRCh37	17	40871210	40871210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	35	424	0	ENST00000428826.2:c.680C>A	p.Ser227Tyr	p.S227Y	ENST00000428826		227	tCc/tAc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244874	41244874	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	74	579	0	ENST00000357654.3:c.2674T>G	p.Leu892Val	p.L892V	ENST00000357654	NM_007294.3	892	Tta/Gta																																																																														
BRCA1	0	MSKCC	GRCh37	17	41256164	41256164	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	66	529	0	ENST00000357654.3:c.416A>C	p.Gln139Pro	p.Q139P	ENST00000357654	NM_007294.3	139	cAg/cCg																																																																														
SPOP	0	MSKCC	GRCh37	17	47677873	47677873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	63	472	0	ENST00000347630.2:c.992A>G	p.Asp331Gly	p.D331G	ENST00000347630	NM_001007230.1	331	gAt/gGt																																																																														
RNF43	0	MSKCC	GRCh37	17	56492894	56492894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	24	268	0	ENST00000407977.2:c.45G>T	p.Trp15Cys	p.W15C	ENST00000407977		15	tgG/tgT																																																																														
BRIP1	0	MSKCC	GRCh37	17	59761153	59761153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	107	540	0	ENST00000259008.2:c.3254G>T	p.Arg1085Ile	p.R1085I	ENST00000259008	NM_032043.2	1085	aGa/aTa																																																																														
BRIP1	0	MSKCC	GRCh37	17	59761378	59761378	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	89	421	0	ENST00000259008.2:c.3029A>C	p.Gln1010Pro	p.Q1010P	ENST00000259008	NM_032043.2	1010	cAg/cCg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59763424	59763424	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	91	546	0	ENST00000259008.2:c.2678A>G	p.Asn893Ser	p.N893S	ENST00000259008	NM_032043.2	893	aAt/aGt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59924582	59924582	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	26	255	0	ENST00000259008.2:c.508-1G>T		p.X170_splice	ENST00000259008	NM_032043.2	170																																																																															
CD79B	0	MSKCC	GRCh37	17	62008712	62008712	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	124	511	0	ENST00000392795.3:c.104G>C	p.Arg35Pro	p.R35P	ENST00000392795	NM_001039933.1	35	cGg/cCg																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66519948	66519948	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	61	419	0	ENST00000358598.2:c.431A>T	p.Asn144Ile	p.N144I	ENST00000358598	NM_212471.2	144	aAt/aTt																																																																														
SOX9	0	MSKCC	GRCh37	17	70120397	70120397	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	141	840	0	ENST00000245479.2:c.1399A>G	p.Thr467Ala	p.T467A	ENST00000245479	NM_000346.3	467	Acc/Gcc																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774994	73774994	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	58	218	0	ENST00000254810.4:c.179A>G	p.Glu60Gly	p.E60G	ENST00000254810	NM_005324.3	60	gAg/gGg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78796020	78796020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	96	567	0	ENST00000306801.3:c.910G>T	p.Asp304Tyr	p.D304Y	ENST00000306801	NM_020761.2	304	Gac/Tac																																																																														
RPTOR	0	MSKCC	GRCh37	17	78931442	78931442	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	120	482	0	ENST00000306801.3:c.3389A>G	p.Asp1130Gly	p.D1130G	ENST00000306801	NM_020761.2	1130	gAc/gGc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39550409	39550409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	95	270	0	ENST00000262039.4:c.520C>T	p.Arg174Cys	p.R174C	ENST00000262039	NM_002647.2	174	Cgt/Tgt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2213557	2213557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	62	563	0	ENST00000398665.3:c.1577T>C	p.Leu526Pro	p.L526P	ENST00000398665	NM_032482.2	526	cTg/cCg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214419	5214419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	40	453	0	ENST00000357368.4:c.4567A>G	p.Thr1523Ala	p.T1523A	ENST00000357368	NM_002850.3	1523	Acc/Gcc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5273488	5273488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	113	627	0	ENST00000357368.4:c.344A>G	p.Glu115Gly	p.E115G	ENST00000357368	NM_002850.3	115	gAg/gGg																																																																														
INSR	0	MSKCC	GRCh37	19	7119578	7119578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	63	467	0	ENST00000302850.5:c.3676C>A	p.Leu1226Ile	p.L1226I	ENST00000302850	NM_000208.2	1226	Ctt/Att																																																																														
INSR	0	MSKCC	GRCh37	19	7152859	7152859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	82	629	0	ENST00000302850.5:c.2109G>T	p.Glu703Asp	p.E703D	ENST00000302850	NM_000208.2	703	gaG/gaT																																																																														
INSR	0	MSKCC	GRCh37	19	7170655	7170655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	59	619	0	ENST00000302850.5:c.1376C>A	p.Pro459His	p.P459H	ENST00000302850	NM_000208.2	459	cCc/cAc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10284556	10284556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	49	475	0	ENST00000340748.4:c.626C>T	p.Ser209Phe	p.S209F	ENST00000340748		209	tCc/tTc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610644	10610644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	114	505	0	ENST00000171111.5:c.66G>T	p.Gln22His	p.Q22H	ENST00000171111	NM_203500.1	22	caG/caT																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11094852	11094852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	207	685	0	ENST00000344626.4:c.25G>A	p.Gly9Ser	p.G9S	ENST00000344626	NM_003072.3	9	Ggc/Agc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302259	15302259	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	162	586	0	ENST00000263388.2:c.1012T>C	p.Cys338Arg	p.C338R	ENST00000263388	NM_000435.2	338	Tgt/Cgt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15311598	15311598	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	14	89	0	ENST00000263388.2:c.118+1G>A		p.X40_splice	ENST00000263388	NM_000435.2	40																																																																															
BRD4	0	MSKCC	GRCh37	19	15366971	15366971	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	43	508	0	ENST00000263377.2:c.1655A>T	p.Lys552Ile	p.K552I	ENST00000263377	NM_058243.2	552	aAa/aTa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221484	36221484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	41	652	0	ENST00000222270.7:c.5243A>G	p.Asp1748Gly	p.D1748G	ENST00000222270	NM_014727.1	1748	gAc/gGc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223001	36223002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	169	783	1	ENST00000222270.7:c.5636dup	p.Val1880CysfsTer92	p.V1880Cfs*92	ENST00000222270	NM_014727.1	1877	ttg/ttGg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223996	36223997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	170	653	0	ENST00000222270.7:c.6552dup	p.Lys2185GlnfsTer25	p.K2185Qfs*25	ENST00000222270	NM_014727.1	2182	-/C																																																																														
AKT2	0	MSKCC	GRCh37	19	40744828	40744828	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	164	621	0	ENST00000392038.2:c.692A>G	p.Tyr231Cys	p.Y231C	ENST00000392038	NM_001626.4	231	tAt/tGt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52705213	52705213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	129	328	0	ENST00000322088.6:c.95T>C	p.Ile32Thr	p.I32T	ENST00000322088	NM_014225.5	32	aTc/aCc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25457289	25457289	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	36	406	0	ENST00000264709.3:c.2598G>T	p.Arg866Ser	p.R866S	ENST00000264709	NM_175629.2	866	agG/agT																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463520	25463520	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	127	517	0	ENST00000264709.3:c.2162A>C	p.Lys721Thr	p.K721T	ENST00000264709	NM_175629.2	721	aAg/aCg																																																																														
ASXL2	0	MSKCC	GRCh37	2	26068420	26068421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	53	271	0	ENST00000435504.4:c.69dup	p.Tyr24IlefsTer9	p.Y24Ifs*9	ENST00000435504		23	-/A																																																																														
ALK	0	MSKCC	GRCh37	2	29449788	29449789	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	50	773	0	ENST00000389048.3:c.3066dup	p.Val1023CysfsTer55	p.V1023Cfs*55	ENST00000389048	NM_004304.4	1022	-/T																																																																														
SOS1	0	MSKCC	GRCh37	2	39234266	39234266	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	63	442	0	ENST00000402219.2:c.2579A>G	p.Gln860Arg	p.Q860R	ENST00000402219	NM_005633.3	860	cAa/cGa																																																																														
SOS1	0	MSKCC	GRCh37	2	39347515	39347515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	112	250	0	ENST00000402219.2:c.49C>T	p.Pro17Ser	p.P17S	ENST00000402219	NM_005633.3	17	Ccc/Tcc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46588097	46588097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	44	563	0	ENST00000263734.3:c.647A>G	p.Glu216Gly	p.E216G	ENST00000263734	NM_001430.4	216	gAg/gGg																																																																														
EPAS1	0	MSKCC	GRCh37	2	46602889	46602889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	132	566	0	ENST00000263734.3:c.947A>G	p.Tyr316Cys	p.Y316C	ENST00000263734	NM_001430.4	316	tAc/tGc																																																																														
MSH2	0	MSKCC	GRCh37	2	47643570	47643570	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	50	397	0	ENST00000233146.2:c.1076+2T>C		p.X359_splice	ENST00000233146	NM_000251.2	359																																																																															
ACVR1	0	MSKCC	GRCh37	2	158630663	158630663	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	90	332	0	ENST00000263640.3:c.580T>C	p.Ser194Pro	p.S194P	ENST00000263640	NM_001105.4	194	Tct/Cct																																																																														
ACVR1	0	MSKCC	GRCh37	2	158637023	158637023	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	97	485	0	ENST00000263640.3:c.157T>C	p.Cys53Arg	p.C53R	ENST00000263640	NM_001105.4	53	Tgc/Cgc																																																																														
PMS1	0	MSKCC	GRCh37	2	190660585	190660585	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	74	302	0	ENST00000441310.2:c.223A>G	p.Thr75Ala	p.T75A	ENST00000441310	NM_000534.4	75	Acc/Gcc																																																																														
PMS1	0	MSKCC	GRCh37	2	190717499	190717499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	86	221	0	ENST00000441310.2:c.818T>C	p.Leu273Ser	p.L273S	ENST00000441310	NM_000534.4	273	tTa/tCa																																																																														
CASP8	0	MSKCC	GRCh37	2	202131283	202131283	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	91	389	0	ENST00000358485.4:c.251T>C	p.Leu84Pro	p.L84P	ENST00000358485	NM_001080125.1	84	cTg/cCg																																																																														
IDH1	0	MSKCC	GRCh37	2	209104641	209104641	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	44	377	0	ENST00000345146.2:c.937A>C	p.Thr313Pro	p.T313P	ENST00000345146	NM_005896.2	313	Acc/Ccc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212543903	212543903	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	117	324	0	ENST00000342788.4:c.1496A>G	p.Glu499Gly	p.E499G	ENST00000342788	NM_005235.2	499	gAa/gGa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566696	212566697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	26	231	0	ENST00000342788.4:c.1484dup	p.Asn495LysfsTer5	p.N495Kfs*5	ENST00000342788	NM_005235.2	495	aat/aaAt																																																																														
INHA	0	MSKCC	GRCh37	2	220439701	220439701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	100	598	0	ENST00000243786.2:c.554C>A	p.Ala185Asp	p.A185D	ENST00000243786	NM_002191.3	185	gCt/gAt																																																																														
CUL3	0	MSKCC	GRCh37	2	225365158	225365158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	86	325	0	ENST00000264414.4:c.1532G>T	p.Gly511Val	p.G511V	ENST00000264414	NM_003590.4	511	gGa/gTa																																																																														
IRS1	0	MSKCC	GRCh37	2	227660352	227660352	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	24	423	0	ENST00000305123.5:c.3103T>C	p.Ser1035Pro	p.S1035P	ENST00000305123	NM_005544.2	1035	Tcc/Ccc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794128	242794128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	192	557	0	ENST00000334409.5:c.600A>G	p.Ile200Met	p.I200M	ENST00000334409	NM_005018.2	200	atA/atG																																																																														
PAK7	0	MSKCC	GRCh37	20	9546967	9546967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	40	288	0	ENST00000353224.5:c.1055G>T	p.Arg352Met	p.R352M	ENST00000353224	NM_177990.2	352	aGg/aTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561120	9561120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	50	373	0	ENST00000353224.5:c.662G>T	p.Arg221Ile	p.R221I	ENST00000353224	NM_177990.2	221	aGa/aTa																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31386319	31386319	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	43	540	0	ENST00000328111.2:c.1544A>G	p.Glu515Gly	p.E515G	ENST00000328111	NM_006892.3	515	gAg/gGg																																																																														
TOP1	0	MSKCC	GRCh37	20	39706241	39706242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	55	227	0	ENST00000361337.2:c.304dup	p.Ile102AsnfsTer11	p.I102Nfs*11	ENST00000361337	NM_003286.2	100	gca/gcAa																																																																														
TOP1	0	MSKCC	GRCh37	20	39750372	39750372	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	58	328	0	ENST00000361337.2:c.1987A>G	p.Arg663Gly	p.R663G	ENST00000361337	NM_003286.2	663	Aga/Gga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713328	40713328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	50	467	0	ENST00000373198.4:c.4187A>G	p.His1396Arg	p.H1396R	ENST00000373198	NM_133170.3	1396	cAc/cGc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735518	40735518	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	46	495	0	ENST00000373198.4:c.3355A>G	p.Met1119Val	p.M1119V	ENST00000373198	NM_133170.3	1119	Atg/Gtg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877388	40877388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	74	480	0	ENST00000373198.4:c.2308A>G	p.Ile770Val	p.I770V	ENST00000373198	NM_133170.3	770	Atc/Gtc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62326797	62326797	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	142	678	0	ENST00000508582.2:c.3688T>G	p.Ser1230Ala	p.S1230A	ENST00000508582		1230	Tca/Gca																																																																														
RUNX1	0	MSKCC	GRCh37	21	36265243	36265243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	63	338	0	ENST00000300305.3:c.76A>G	p.Asn26Asp	p.N26D	ENST00000300305		26	Aat/Gat																																																																														
CRKL	0	MSKCC	GRCh37	22	21304055	21304055	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	108	514	0	ENST00000354336.3:c.834A>T	p.Glu278Asp	p.E278D	ENST00000354336	NM_005207.3	278	gaA/gaT																																																																														
CRKL	0	MSKCC	GRCh37	22	21304129	21304129	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	117	500	0	ENST00000354336.3:c.908A>T	p.Glu303Val	p.E303V	ENST00000354336	NM_005207.3	303	gAg/gTg																																																																														
NF2	0	MSKCC	GRCh37	22	30000012	30000012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	36	330	0	ENST00000338641.4:c.25A>G	p.Met9Val	p.M9V	ENST00000338641	NM_000268.3	9	Atg/Gtg																																																																														
RAF1	0	MSKCC	GRCh37	3	12633225	12633225	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	57	490	0	ENST00000251849.4:c.1175A>C	p.Asn392Thr	p.N392T	ENST00000251849	NM_002880.3	392	aAt/aCt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691925	30691925	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	44	335	0	ENST00000359013.4:c.502T>C	p.Cys168Arg	p.C168R	ENST00000359013	NM_001024847.2	168	Tgc/Cgc																																																																														
SETD2	0	MSKCC	GRCh37	3	47161957	47161958	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	90	331	0	ENST00000409792.3:c.4168dup	p.Ser1390PhefsTer8	p.S1390Ffs*8	ENST00000409792	NM_014159.6	1390	tca/tTca																																																																														
SETD2	0	MSKCC	GRCh37	3	47163845	47163845	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	74	421	0	ENST00000409792.3:c.2281A>G	p.Met761Val	p.M761V	ENST00000409792	NM_014159.6	761	Atg/Gtg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71015045	71015045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	86	252	0	ENST00000318789.4:c.1885G>A	p.Ala629Thr	p.A629T	ENST00000318789	NM_032682.5	629	Gcc/Acc																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73110192	73110192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	35	373	0	ENST00000356692.5:c.400T>C	p.Cys134Arg	p.C134R	ENST00000356692		134	Tgt/Cgt																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114187	73114187	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	73	395	0	ENST00000356692.5:c.823G>T	p.Glu275Ter	p.E275*	ENST00000356692		275	Gaa/Taa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670796	134670796	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	112	364	0	ENST00000398015.3:c.707T>C	p.Ile236Thr	p.I236T	ENST00000398015	NM_004441.4	236	aTc/aCc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138382768	138382768	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	84	404	0	ENST00000289153.2:c.2776A>T	p.Met926Leu	p.M926L	ENST00000289153	NM_006219.2	926	Atg/Ttg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138456693	138456693	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	129	387	0	ENST00000289153.2:c.657T>G	p.Asn219Lys	p.N219K	ENST00000289153	NM_006219.2	219	aaT/aaG																																																																														
ATR	0	MSKCC	GRCh37	3	142215276	142215276	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	51	446	0	ENST00000350721.4:c.5825A>C	p.Asn1942Thr	p.N1942T	ENST00000350721	NM_001184.3	1942	aAt/aCt																																																																														
ATR	0	MSKCC	GRCh37	3	142259823	142259823	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	59	475	0	ENST00000350721.4:c.3504T>G	p.Ser1168Arg	p.S1168R	ENST00000350721	NM_001184.3	1168	agT/agG																																																																														
WWTR1	0	MSKCC	GRCh37	3	149374901	149374901	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	125	396	0	ENST00000360632.3:c.193T>A	p.Ser65Thr	p.S65T	ENST00000360632	NM_015472.4	65	Tcc/Acc																																																																														
PRKCI	0	MSKCC	GRCh37	3	170002329	170002329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	30	157	0	ENST00000295797.4:c.1148A>G	p.Asn383Ser	p.N383S	ENST00000295797	NM_002740.5	383	aAt/aGt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952152	178952152	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	57	238	0	ENST00000263967.3:c.3207A>G	p.Ter1069TrpextTer4	p.*1069Wext*4	ENST00000263967	NM_006218.2	1069	tgA/tgG																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803467	1803467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	48	377	0	ENST00000260795.2:c.736C>A	p.Leu246Met	p.L246M	ENST00000260795		246	Ctg/Atg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1932437	1932437	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	59	565	0	ENST00000382891.5:c.1495A>T	p.Arg499Ter	p.R499*	ENST00000382891	NM_133335.3	499	Aga/Tga																																																																														
WHSC1	0	MSKCC	GRCh37	4	1952919	1952919	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	161	523	0	ENST00000382891.5:c.2002T>A	p.Tyr668Asn	p.Y668N	ENST00000382891	NM_133335.3	668	Tat/Aat																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55146599	55146599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	94	468	0	ENST00000257290.5:c.2273A>G	p.Gln758Arg	p.Q758R	ENST00000257290	NM_006206.4	758	cAg/cGg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156706	55156706	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	63	327	0	ENST00000257290.5:c.3107A>T	p.Lys1036Met	p.K1036M	ENST00000257290	NM_006206.4	1036	aAg/aTg																																																																														
KIT	0	MSKCC	GRCh37	4	55592069	55592069	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	88	405	0	ENST00000288135.5:c.1393T>C	p.Ser465Pro	p.S465P	ENST00000288135	NM_000222.2	465	Tct/Cct																																																																														
KIT	0	MSKCC	GRCh37	4	55598057	55598057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	76	332	0	ENST00000288135.5:c.2254G>T	p.Val752Leu	p.V752L	ENST00000288135	NM_000222.2	752	Gtg/Ttg																																																																														
KDR	0	MSKCC	GRCh37	4	55984908	55984908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	122	403	0	ENST00000263923.4:c.221T>C	p.Val74Ala	p.V74A	ENST00000263923	NM_002253.2	74	gTg/gCg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197689	66197689	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	60	310	0	ENST00000273854.3:c.3008+2T>C		p.X1003_splice	ENST00000273854	NM_004439.5	1003																																																																															
TET2	0	MSKCC	GRCh37	4	106162547	106162547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	32	378	0	ENST00000380013.4:c.3461G>A	p.Gly1154Asp	p.G1154D	ENST00000380013	NM_001127208.2	1154	gGt/gAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187519132	187519132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	47	421	0	ENST00000441802.2:c.12251G>T	p.Gly4084Val	p.G4084V	ENST00000441802	NM_005245.3	4084	gGt/gTt																																																																														
FAT1	0	MSKCC	GRCh37	4	187540282	187540282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	65	420	0	ENST00000441802.2:c.7458T>A	p.Asn2486Lys	p.N2486K	ENST00000441802	NM_005245.3	2486	aaT/aaA																																																																														
FAT1	0	MSKCC	GRCh37	4	187541217	187541217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	34	314	0	ENST00000441802.2:c.6523A>G	p.Met2175Val	p.M2175V	ENST00000441802	NM_005245.3	2175	Atg/Gtg																																																																														
FAT1	0	MSKCC	GRCh37	4	187542740	187542740	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	102	387	0	ENST00000441802.2:c.5000T>A	p.Phe1667Tyr	p.F1667Y	ENST00000441802	NM_005245.3	1667	tTt/tAt																																																																														
SDHA	0	MSKCC	GRCh37	5	223643	223643	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	41	443	0	ENST00000264932.6:c.110T>A	p.Val37Asp	p.V37D	ENST00000264932	NM_004168.2	37	gTt/gAt																																																																														
TERT	0	MSKCC	GRCh37	5	1253925	1253925	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	40	484	0	ENST00000310581.5:c.3317A>G	p.Lys1106Arg	p.K1106R	ENST00000310581	NM_198253.2	1106	aAg/aGg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31483700	31483700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	52	308	0	ENST00000344624.3:c.2032A>G	p.Arg678Gly	p.R678G	ENST00000344624		678	Aga/Gga																																																																														
DROSHA	0	MSKCC	GRCh37	5	31504744	31504744	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	83	366	0	ENST00000344624.3:c.1588-2A>G		p.X530_splice	ENST00000344624		530																																																																															
DROSHA	0	MSKCC	GRCh37	5	31526493	31526493	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	71	793	0	ENST00000344624.3:c.547A>G	p.Asn183Asp	p.N183D	ENST00000344624		183	Aat/Gat																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526743	31526743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	52	659	1	ENST00000344624.3:c.297G>T	p.Arg99Ser	p.R99S	ENST00000344624		99	agG/agT																																																																														
RICTOR	0	MSKCC	GRCh37	5	38959897	38959898	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	74	237	0	ENST00000357387.3:c.2034dup	p.Cys679MetfsTer9	p.C679Mfs*9	ENST00000357387	NM_152756.3	678	-/A																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589149	67589149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	98	249	0	ENST00000274335.5:c.1137A>C	p.Lys379Asn	p.K379N	ENST00000274335		379	aaA/aaC																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591294	67591294	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	42	378	0	ENST00000274335.5:c.1792T>A	p.Leu598Met	p.L598M	ENST00000274335		598	Ttg/Atg																																																																														
RASA1	0	MSKCC	GRCh37	5	86679534	86679534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	29	295	0	ENST00000274376.6:c.2695T>C	p.Phe899Leu	p.F899L	ENST00000274376	NM_002890.2	899	Ttt/Ctt																																																																														
APC	0	MSKCC	GRCh37	5	112162841	112162841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	101	356	0	ENST00000257430.4:c.1445A>G	p.Asp482Gly	p.D482G	ENST00000257430	NM_000038.5	482	gAc/gGc																																																																														
APC	0	MSKCC	GRCh37	5	112174647	112174647	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	66	313	0	ENST00000257430.4:c.3356A>G	p.His1119Arg	p.H1119R	ENST00000257430	NM_000038.5	1119	cAt/cGt																																																																														
APC	0	MSKCC	GRCh37	5	112175858	112175858	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	28	274	0	ENST00000257430.4:c.4567A>G	p.Arg1523Gly	p.R1523G	ENST00000257430	NM_000038.5	1523	Aga/Gga																																																																														
APC	0	MSKCC	GRCh37	5	112176498	112176498	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	93	369	0	ENST00000257430.4:c.5207A>G	p.Lys1736Arg	p.K1736R	ENST00000257430	NM_000038.5	1736	aAa/aGa																																																																														
APC	0	MSKCC	GRCh37	5	112176739	112176740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	38	270	0	ENST00000257430.4:c.5453dup	p.Asn1818LysfsTer2	p.N1818Kfs*2	ENST00000257430	NM_000038.5	1816	-/A																																																																														
APC	0	MSKCC	GRCh37	5	112176955	112176955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	57	465	1	ENST00000257430.4:c.5664G>T	p.Lys1888Asn	p.K1888N	ENST00000257430	NM_000038.5	1888	aaG/aaT																																																																														
APC	0	MSKCC	GRCh37	5	112177025	112177025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	161	537	1	ENST00000257430.4:c.5734G>A	p.Ala1912Thr	p.A1912T	ENST00000257430	NM_000038.5	1912	Gct/Act																																																																														
NSD1	0	MSKCC	GRCh37	5	176636723	176636724	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	72	415	0	ENST00000439151.2:c.1324dup	p.Cys442LeufsTer11	p.C442Lfs*11	ENST00000439151	NM_022455.4	441	-/T																																																																														
NSD1	0	MSKCC	GRCh37	5	176696711	176696711	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	90	328	0	ENST00000439151.2:c.5412T>G	p.Tyr1804Ter	p.Y1804*	ENST00000439151	NM_022455.4	1804	taT/taG																																																																														
NSD1	0	MSKCC	GRCh37	5	176715855	176715855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	118	453	0	ENST00000439151.2:c.6187C>A	p.Leu2063Ile	p.L2063I	ENST00000439151	NM_022455.4	2063	Ctt/Att																																																																														
NSD1	0	MSKCC	GRCh37	5	176720920	176720920	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	24	392	0	ENST00000439151.2:c.6551A>T	p.Lys2184Met	p.K2184M	ENST00000439151	NM_022455.4	2184	aAg/aTg																																																																														
NSD1	0	MSKCC	GRCh37	5	176721148	176721148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	40	384	0	ENST00000439151.2:c.6779A>G	p.Gln2260Arg	p.Q2260R	ENST00000439151	NM_022455.4	2260	cAg/cGg																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271336	26271336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	46	439	1	ENST00000305910.3:c.277C>A	p.Leu93Met	p.L93M	ENST00000305910	NM_003534.2	93	Ctg/Atg																																																																														
MDC1	0	MSKCC	GRCh37	6	30672400	30672401	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	119	637	0	ENST00000376406.3:c.4559dup	p.Asn1520LysfsTer9	p.N1520Kfs*9	ENST00000376406	NM_014641.2	1520	aat/aaAt																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652096	36652096	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	59	616	0	ENST00000244741.5:c.218T>G	p.Leu73Arg	p.L73R	ENST00000244741	NM_000389.4	73	cTg/cGg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956574	93956574	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	68	366	0	ENST00000369303.4:c.2662G>T	p.Gly888Ter	p.G888*	ENST00000369303	NM_004440.3	888	Gga/Tga																																																																														
SESN1	0	MSKCC	GRCh37	6	109322501	109322501	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs151284724		P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	64	450	0	ENST00000436639.2:c.536T>C	p.Ile179Thr	p.I179T	ENST00000436639	NM_014454.2	179	aTt/aCt																																																																														
FYN	0	MSKCC	GRCh37	6	111995719	111995719	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	34	332	0	ENST00000368678.4:c.1379del	p.Gly460GlufsTer8	p.G460Efs*8	ENST00000368678		460	gGa/ga																																																																														
ROS1	0	MSKCC	GRCh37	6	117662657	117662657	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	32	459	0	ENST00000368508.3:c.4808T>C	p.Ile1603Thr	p.I1603T	ENST00000368508	NM_002944.2	1603	aTt/aCt																																																																														
ROS1	0	MSKCC	GRCh37	6	117679171	117679171	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	45	310	0	ENST00000368508.3:c.3650T>C	p.Leu1217Pro	p.L1217P	ENST00000368508	NM_002944.2	1217	cTt/cCt																																																																														
ROS1	0	MSKCC	GRCh37	6	117710551	117710551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	22	236	0	ENST00000368508.3:c.1721T>C	p.Leu574Pro	p.L574P	ENST00000368508	NM_002944.2	574	cTt/cCt																																																																														
ROS1	0	MSKCC	GRCh37	6	117715899	117715899	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	28	326	0	ENST00000368508.3:c.859C>T	p.Gln287Ter	p.Q287*	ENST00000368508	NM_002944.2	287	Caa/Taa																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138199574	138199574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	35	234	1	ENST00000237289.4:c.992A>G	p.Asp331Gly	p.D331G	ENST00000237289	NM_001270507.1	331	gAt/gGt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527316	157527316	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	93	277	1	ENST00000346085.5:c.5041G>T	p.Glu1681Ter	p.E1681*	ENST00000346085	NM_020732.3	1681	Gaa/Taa																																																																														
PARK2	0	MSKCC	GRCh37	6	162864497	162864497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	62	375	0	ENST00000366898.1:c.16A>G	p.Arg6Gly	p.R6G	ENST00000366898	NM_004562.2	6	Agg/Ggg																																																																														
CARD11	0	MSKCC	GRCh37	7	2962840	2962840	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	142	577	0	ENST00000396946.4:c.2068A>G	p.Ser690Gly	p.S690G	ENST00000396946	NM_032415.4	690	Agc/Ggc																																																																														
CARD11	0	MSKCC	GRCh37	7	2983925	2983925	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	93	663	0	ENST00000396946.4:c.605A>G	p.Tyr202Cys	p.Y202C	ENST00000396946	NM_032415.4	202	tAc/tGc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729810	41729810	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	81	310	0	ENST00000242208.4:c.719T>C	p.Val240Ala	p.V240A	ENST00000242208	NM_002192.2	240	gTt/gCt																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450370	50450370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	42	424	0	ENST00000331340.3:c.554G>T	p.Arg185Met	p.R185M	ENST00000331340	NM_006060.4	185	aGg/aTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55269037	55269037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	51	598	0	ENST00000275493.2:c.3103C>A	p.Leu1035Met	p.L1035M	ENST00000275493	NM_005228.3	1035	Ctg/Atg																																																																														
HGF	0	MSKCC	GRCh37	7	81386572	81386572	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	40	418	0	ENST00000222390.5:c.415A>G	p.Thr139Ala	p.T139A	ENST00000222390	NM_000601.4	139	Aca/Gca																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509835	106509835	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	35	593	0	ENST00000359195.3:c.1829T>G	p.Leu610Trp	p.L610W	ENST00000359195	NM_002649.2	610	tTg/tGg																																																																														
MET	0	MSKCC	GRCh37	7	116340137	116340137	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	62	246	0	ENST00000397752.3:c.999A>G	p.Ile333Met	p.I333M	ENST00000397752	NM_000245.2	333	atA/atG																																																																														
MET	0	MSKCC	GRCh37	7	116340238	116340238	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	81	292	1	ENST00000397752.3:c.1100T>A	p.Ile367Asn	p.I367N	ENST00000397752	NM_000245.2	367	aTc/aAc																																																																														
MET	0	MSKCC	GRCh37	7	116398662	116398662	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	39	329	0	ENST00000397752.3:c.2252A>G	p.Lys751Arg	p.K751R	ENST00000397752	NM_000245.2	751	aAa/aGa																																																																														
MET	0	MSKCC	GRCh37	7	116414995	116414995	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	72	587	0	ENST00000397752.3:c.3089A>G	p.Asp1030Gly	p.D1030G	ENST00000397752	NM_000245.2	1030	gAc/gGc																																																																														
SMO	0	MSKCC	GRCh37	7	128852099	128852099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	42	751	0	ENST00000249373.3:c.2171C>A	p.Ser724Tyr	p.S724Y	ENST00000249373	NM_005631.4	724	tCt/tAt																																																																														
BRAF	0	MSKCC	GRCh37	7	140501302	140501302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	83	374	0	ENST00000288602.6:c.770A>G	p.Gln257Arg	p.Q257R	ENST00000288602	NM_004333.4	257	cAg/cGg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859701	151859701	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	91	261	0	ENST00000262189.6:c.10961A>G	p.Gln3654Arg	p.Q3654R	ENST00000262189	NM_170606.2	3654	cAa/cGa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878613	151878613	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	137	505	0	ENST00000262189.6:c.6332A>G	p.His2111Arg	p.H2111R	ENST00000262189	NM_170606.2	2111	cAt/cGt																																																																														
XRCC2	0	MSKCC	GRCh37	7	152373136	152373136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	69	440	1	ENST00000359321.1:c.29C>A	p.Ser10Tyr	p.S10Y	ENST00000359321	NM_005431.1	10	tCt/tAt																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23539020	23539020	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	74	493	0	ENST00000380871.4:c.419A>T	p.Glu140Val	p.E140V	ENST00000380871	NM_006167.3	140	gAg/gTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133907	38133907	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	131	674	0	ENST00000317025.8:c.3979T>C	p.Cys1327Arg	p.C1327R	ENST00000317025	NM_023034.1	1327	Tgt/Cgt																																																																														
PREX2	0	MSKCC	GRCh37	8	69028169	69028169	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	76	476	0	ENST00000288368.4:c.3326+2T>C		p.X1109_splice	ENST00000288368	NM_024870.2	1109																																																																															
JAK2	0	MSKCC	GRCh37	9	5070003	5070003	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	57	349	0	ENST00000381652.3:c.1592A>G	p.His531Arg	p.H531R	ENST00000381652	NM_004972.3	531	cAt/cGt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341193	8341193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	41	364	0	ENST00000356435.5:c.5023C>A	p.Leu1675Ile	p.L1675I	ENST00000356435		1675	Ctt/Att																																																																														
PTPRD	0	MSKCC	GRCh37	9	8492946	8492946	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	133	447	0	ENST00000356435.5:c.2383T>C	p.Ser795Pro	p.S795P	ENST00000356435		795	Tcc/Ccc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8497255	8497255	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	84	357	0	ENST00000356435.5:c.2336A>T	p.Asp779Val	p.D779V	ENST00000356435		779	gAt/gTt																																																																														
SYK	0	MSKCC	GRCh37	9	93636523	93636523	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	72	447	0	ENST00000375746.1:c.953T>C	p.Val318Ala	p.V318A	ENST00000375746	NM_001174167.1	318	gTg/gCg																																																																														
FANCC	0	MSKCC	GRCh37	9	97912278	97912278	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	56	433	0	ENST00000289081.3:c.613A>G	p.Ile205Val	p.I205V	ENST00000289081	NM_000136.2	205	Atc/Gtc																																																																														
ABL1	0	MSKCC	GRCh37	9	133710873	133710873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	45	247	2	ENST00000318560.5:c.40A>G	p.Lys14Glu	p.K14E	ENST00000318560	NM_005157.4	14	Aag/Gag																																																																														
ABL1	0	MSKCC	GRCh37	9	133738397	133738397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	37	402	0	ENST00000318560.5:c.797T>C	p.Leu266Pro	p.L266P	ENST00000318560	NM_005157.4	266	cTg/cCg																																																																														
ABL1	0	MSKCC	GRCh37	9	133760915	133760915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	65	712	0	ENST00000318560.5:c.3238A>G	p.Lys1080Glu	p.K1080E	ENST00000318560	NM_005157.4	1080	Aag/Gag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391443	139391443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	39	618	0	ENST00000277541.6:c.6748G>A	p.Ala2250Thr	p.A2250T	ENST00000277541	NM_017617.3	2250	Gcg/Acg																																																																														
CRLF2	0	MSKCC	GRCh37	X	1325431	1325431	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	41	439	0	ENST00000381566.1:c.244T>C	p.Ser82Pro	p.S82P	ENST00000381566		82	Tcg/Ccg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44923040	44923040	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	193	532	0	ENST00000377967.4:c.1901A>C	p.Asn634Thr	p.N634T	ENST00000377967	NM_021140.2	634	aAc/aCc																																																																														
GATA1	0	MSKCC	GRCh37	X	48650828	48650828	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	168	669	0	ENST00000376670.3:c.697A>G	p.Lys233Glu	p.K233E	ENST00000376670	NM_002049.3	233	Aag/Gag																																																																														
GATA1	0	MSKCC	GRCh37	X	48652231	48652231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	59	589	0	ENST00000376670.3:c.902G>A	p.Gly301Asp	p.G301D	ENST00000376670	NM_002049.3	301	gGt/gAt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53225949	53225949	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	38	728	0	ENST00000375401.3:c.2900A>G	p.Asp967Gly	p.D967G	ENST00000375401	NM_004187.3	967	gAt/gGt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53225964	53225964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	80	731	0	ENST00000375401.3:c.2885C>A	p.Pro962His	p.P962H	ENST00000375401	NM_004187.3	962	cCt/cAt																																																																														
AMER1	0	MSKCC	GRCh37	X	63410955	63410955	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	96	534	1	ENST00000330258.3:c.2212G>T	p.Gly738Ter	p.G738*	ENST00000330258	NM_152424.3	738	Gga/Tga																																																																														
ATRX	0	MSKCC	GRCh37	X	76888773	76888773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	33	437	0	ENST00000373344.5:c.5056T>C	p.Tyr1686His	p.Y1686H	ENST00000373344	NM_000489.3	1686	Tat/Cat																																																																														
XIAP	0	MSKCC	GRCh37	X	123019624	123019624	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	165	478	0	ENST00000355640.3:c.112A>T	p.Ser38Cys	p.S38C	ENST00000355640		38	Agt/Tgt																																																																														
STAG2	0	MSKCC	GRCh37	X	123210263	123210263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	66	509	0	ENST00000218089.9:c.2615T>C	p.Ile872Thr	p.I872T	ENST00000218089	NM_001042749.1	872	aTt/aCt																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860007	152860007	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0029972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	87	334	0	ENST00000406277.2:c.421A>G	p.Lys141Glu	p.K141E	ENST00000406277	NM_152274.4	141	Aag/Gag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0029976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	154	414	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602532	10602532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	193	539	0	ENST00000171111.5:c.1046A>G	p.Asp349Gly	p.D349G	ENST00000171111	NM_203500.1	349	gAc/gGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578183	7578210	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCTCATAGGGCACCACCACACTATGT	CGGCTCATAGGGCACCACCACACTATGT	-			P-0029976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	390	640	0	ENST00000269305.4:c.639_666del	p.His214LeufsTer24	p.H214Lfs*24	ENST00000269305	NM_001126112.2	213	cgACATAGTGTGGTGGTGCCCTATGAGCCG/cg																																																																														
FAT1	0	MSKCC	GRCh37	4	187584651	187584651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	75	514	0	ENST00000441802.2:c.3382G>C	p.Glu1128Gln	p.E1128Q	ENST00000441802	NM_005245.3	1128	Gag/Cag																																																																														
FLT4	0	MSKCC	GRCh37	5	180057230	180057230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	100	619	0	ENST00000261937.6:c.508C>T	p.Arg170Cys	p.R170C	ENST00000261937	NM_182925.4	170	Cgc/Tgc																																																																														
STK11	0	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	213	604	0	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																														
JAK2	0	MSKCC	GRCh37	9	5069931	5069931	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	32	256	0	ENST00000381652.3:c.1520C>G	p.Ser507Ter	p.S507*	ENST00000381652	NM_004972.3	507	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	409	499	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
MTOR	0	MSKCC	GRCh37	1	11187726	11187726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	118	565	0	ENST00000361445.4:c.6171G>C	p.Met2057Ile	p.M2057I	ENST00000361445	NM_004958.3	2057	atG/atC																																																																														
FGF19	0	MSKCC	GRCh37	11	69518564	69518564	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	60	339	0	ENST00000294312.3:c.81C>G	p.Phe27Leu	p.F27L	ENST00000294312	NM_005117.2	27	ttC/ttG																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435131	49435131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	180	504	1	ENST00000301067.7:c.6422G>T	p.Gly2141Val	p.G2141V	ENST00000301067	NM_003482.3	2141	gGg/gTg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56488249	56488249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	92	514	0	ENST00000267101.3:c.1768C>G	p.Pro590Ala	p.P590A	ENST00000267101	NM_001982.3	590	Ccc/Gcc																																																																														
SLX4	0	MSKCC	GRCh37	16	3641276	3641276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	168	637	0	ENST00000294008.3:c.2363A>G	p.Gln788Arg	p.Q788R	ENST00000294008	NM_032444.2	788	cAg/cGg																																																																														
NF1	0	MSKCC	GRCh37	17	29509623	29509623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	106	536	1	ENST00000358273.4:c.828G>T	p.Leu276Phe	p.L276F	ENST00000358273	NM_001042492.2	276	ttG/ttT																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602480	10602505	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAGGCCGCTCCGCGGCACCTGCA	GGCCAGGCCGCTCCGCGGCACCTGCA	-			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	246	504	0	ENST00000171111.5:c.1073_1098del	p.Leu358ArgfsTer48	p.L358Rfs*48	ENST00000171111	NM_203500.1	358	cTGCAGGTGCCGCGGAGCGGCCTGGCC/c																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11135095	11135095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	275	669	0	ENST00000344626.4:c.3062G>A	p.Gly1021Asp	p.G1021D	ENST00000344626	NM_003072.3	1021	gGc/gAc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096626	178096626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	71	270	0	ENST00000397062.3:c.705G>T	p.Met235Ile	p.M235I	ENST00000397062	NM_006164.4	235	atG/atT																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31384639	31384639	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	296	592	0	ENST00000328111.2:c.1343del	p.Pro448LeufsTer142	p.P448Lfs*142	ENST00000328111	NM_006892.3	447	caC/ca																																																																														
FAT1	0	MSKCC	GRCh37	4	187557193	187557193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	100	356	0	ENST00000441802.2:c.4169G>C	p.Trp1390Ser	p.W1390S	ENST00000441802	NM_005245.3	1390	tGg/tCg																																																																														
NSD1	0	MSKCC	GRCh37	5	176722053	176722053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	68	361	0	ENST00000439151.2:c.7684G>A	p.Gly2562Arg	p.G2562R	ENST00000439151	NM_022455.4	2562	Ggg/Agg																																																																														
TAP2	0	MSKCC	GRCh37	6	32797305	32797305	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	96	550	0	ENST00000374899.4:c.1804G>C	p.Glu602Gln	p.E602Q	ENST00000374899	NM_018833.2	602	Gag/Cag																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138202236	138202236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	102	455	0	ENST00000237289.4:c.2153G>A	p.Arg718Gln	p.R718Q	ENST00000237289	NM_001270507.1	718	cGg/cAg																																																																														
EZH2	0	MSKCC	GRCh37	7	148506483	148506483	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	93	192	0	ENST00000320356.2:c.2030-1G>T		p.X677_splice	ENST00000320356	NM_004456.4	677																																																																															
PRDM14	0	MSKCC	GRCh37	8	70978602	70978602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	104	601	0	ENST00000276594.2:c.1051G>A	p.Glu351Lys	p.E351K	ENST00000276594	NM_024504.3	351	Gag/Aag																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128348003	128348003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	114	538	0	ENST00000265960.3:c.502C>A	p.His168Asn	p.H168N	ENST00000265960	NM_001006617.1	168	Cat/Aat																																																																														
ATRX	0	MSKCC	GRCh37	X	76912126	76912126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	57	171	0	ENST00000373344.5:c.4138G>A	p.Glu1380Lys	p.E1380K	ENST00000373344	NM_000489.3	1380	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	89	511	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910350	29910350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0029978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	79	825	0	ENST00000376809.5:c.20G>C	p.Arg7Pro	p.R7P	ENST00000376809	NM_002116.7	7	cGa/cCa																																																																														
TP53	0	MSKCC	GRCh37	17	7576862	7576862	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	102	519	0	ENST00000269305.4:c.984del	p.Phe328LeufsTer17	p.F328Lfs*17	ENST00000269305	NM_001126112.2	328	ttC/tt																																																																														
KDM5A	0	MSKCC	GRCh37	12	404821	404821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	50	450	0	ENST00000399788.2:c.4373C>T	p.Ser1458Phe	p.S1458F	ENST00000399788	NM_001042603.1	1458	tCt/tTt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134960027	134960027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	60	431	0	ENST00000398015.3:c.2384C>T	p.Ala795Val	p.A795V	ENST00000398015	NM_004441.4	795	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	128	592	2	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105520	27105520	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	31	273	2	ENST00000324856.7:c.5131G>T	p.Gly1711Trp	p.G1711W	ENST00000324856	NM_006015.4	1711	Ggg/Tgg																																																																														
SESN2	0	MSKCC	GRCh37	1	28607257	28607257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	160	402	0	ENST00000253063.3:c.1387C>T	p.Arg463Cys	p.R463C	ENST00000253063	NM_031459.4	463	Cgc/Tgc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36933563	36933563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	48	516	1	ENST00000361632.4:c.1724C>T	p.Ser575Phe	p.S575F	ENST00000361632		575	tCc/tTc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798458	45798458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	191	552	2	ENST00000372115.3:c.511C>T	p.Arg171Trp	p.R171W	ENST00000372115	NM_001048171.1	171	Cgg/Tgg																																																																														
NEGR1	0	MSKCC	GRCh37	1	72058500	72058500	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	62	284	0	ENST00000357731.5:c.940C>A	p.Pro314Thr	p.P314T	ENST00000357731	NM_173808.2	314	Cct/Act																																																																														
CSDE1	0	MSKCC	GRCh37	1	115275252	115275252	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	46	401	2	ENST00000438362.2:c.1161del	p.Gln388SerfsTer11	p.Q388Sfs*11	ENST00000438362	NM_001242891.1	387	ttT/tt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120466515	120466515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	184	404	1	ENST00000256646.2:c.4604C>T	p.Ala1535Val	p.A1535V	ENST00000256646	NM_024408.3	1535	gCt/gTt																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957464	175957465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	145	395	1	ENST00000367669.3:c.1931dup	p.Asn644LysfsTer17	p.N644Kfs*17	ENST00000367669	NM_022457.5	644	aac/aaAc																																																																														
FH	0	MSKCC	GRCh37	1	241680594	241680594	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	127	351	0	ENST00000366560.3:c.155T>C	p.Ile52Thr	p.I52T	ENST00000366560	NM_000143.3	52	aTa/aCa																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88649922	88649922	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	146	415	0	ENST00000372037.3:c.176del	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	57	ccT/cc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	47	221	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
MEN1	0	MSKCC	GRCh37	11	64572198	64572198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	85	241	2	ENST00000337652.1:c.1456C>T	p.Arg486Trp	p.R486W	ENST00000337652	NM_130803.2	486	Cgg/Tgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	150	554	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ATM	0	MSKCC	GRCh37	11	108199881	108199881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	99	266	1	ENST00000278616.4:c.7223C>T	p.Ser2408Leu	p.S2408L	ENST00000278616	NM_000051.3	2408	tCg/tTg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	180	500	1	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
KDM5A	0	MSKCC	GRCh37	12	442811	442811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	212	322	0	ENST00000399788.2:c.1495del	p.Glu499SerfsTer19	p.E499Sfs*19	ENST00000399788	NM_001042603.1	499	Gag/ag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	253	384	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420859	49420859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	179	464	0	ENST00000301067.7:c.14890C>T	p.Arg4964Cys	p.R4964C	ENST00000301067	NM_003482.3	4964	Cgt/Tgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435119	49435119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	143	419	0	ENST00000301067.7:c.6434C>T	p.Pro2145Leu	p.P2145L	ENST00000301067	NM_003482.3	2145	cCg/cTg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	273	539	5	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
POLE	0	MSKCC	GRCh37	12	133209086	133209086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	82	362	0	ENST00000320574.5:c.6145A>G	p.Thr2049Ala	p.T2049A	ENST00000320574	NM_006231.2	2049	Acc/Gcc																																																																														
POLE	0	MSKCC	GRCh37	12	133219113	133219113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	179	540	0	ENST00000320574.5:c.4931C>T	p.Ser1644Leu	p.S1644L	ENST00000320574	NM_006231.2	1644	tCg/tTg																																																																														
CDK8	0	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	100	318	1	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110434683	110434683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	202	449	0	ENST00000375856.3:c.3718C>T	p.Arg1240Cys	p.R1240C	ENST00000375856	NM_003749.2	1240	Cgc/Tgc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060686	38060686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	138	610	0	ENST00000250448.2:c.1303G>A	p.Ala435Thr	p.A435T	ENST00000250448	NM_004496.3	435	Gcc/Acc																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	136	459	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	40	560	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992483	72992483	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	129	631	1	ENST00000268489.5:c.1562delA	p.Lys521ArgfsTer15	p.K521Rfs*15	ENST00000268489	NM_006885.3	521	aAg/ag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89357135	89357135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	182	453	0	ENST00000301030.4:c.499C>T	p.Arg167Cys	p.R167C	ENST00000301030	NM_001256183.1	167	Cgt/Tgt																																																																														
FANCA	0	MSKCC	GRCh37	16	89805041	89805041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	205	509	1	ENST00000389301.3:c.4336G>A	p.Ala1446Thr	p.A1446T	ENST00000389301	NM_000135.2	1446	Gct/Act																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	431	518	3	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
SUZ12	0	MSKCC	GRCh37	17	30320963	30320963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	186	492	1	ENST00000322652.5:c.1373G>A	p.Arg458His	p.R458H	ENST00000322652	NM_015355.2	458	cGc/cAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	222	514	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	194	646	4	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804188	46804190	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	215	512	0	ENST00000290295.7:c.817_819del	p.Lys273del	p.K273del	ENST00000290295	NM_006361.5	273	AAG/-																																																																														
RNF43	0	MSKCC	GRCh37	17	56434861	56434861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	48	436	0	ENST00000407977.2:c.2276A>G	p.Tyr759Cys	p.Y759C	ENST00000407977		759	tAt/tGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	156	457	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	0	MSKCC	GRCh37	17	56435168	56435168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	113	442	1	ENST00000407977.2:c.1969C>T	p.Arg657Trp	p.R657W	ENST00000407977		657	Cgg/Tgg																																																																														
RNF43	0	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	179	506	0	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740809	58740809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	180	405	0	ENST00000305921.3:c.1714C>T	p.Arg572Ter	p.R572*	ENST00000305921	NM_003620.3	572	Cga/Tga																																																																														
BRIP1	0	MSKCC	GRCh37	17	59763508	59763508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	101	371	0	ENST00000259008.2:c.2594G>A	p.Arg865Gln	p.R865Q	ENST00000259008	NM_032043.2	865	cGg/cAg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59876602	59876602	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	171	385	0	ENST00000259008.2:c.1199A>C	p.Asp400Ala	p.D400A	ENST00000259008	NM_032043.2	400	gAc/gCc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39593518	39593518	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	48	306	0	ENST00000262039.4:c.1286del	p.Asn429MetfsTer7	p.N429Mfs*7	ENST00000262039	NM_002647.2	428	gAa/ga																																																																														
TCF3	0	MSKCC	GRCh37	19	1627411	1627411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	212	565	2	ENST00000344749.5:c.313C>T	p.Arg105Trp	p.R105W	ENST00000344749	NM_001136139.2	105	Cgg/Tgg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222418	2222418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	146	385	1	ENST00000398665.3:c.3250C>T	p.Arg1084Cys	p.R1084C	ENST00000398665	NM_032482.2	1084	Cgc/Tgc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5210796	5210796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	172	460	0	ENST00000357368.4:c.5255C>T	p.Ala1752Val	p.A1752V	ENST00000357368	NM_002850.3	1752	gCg/gTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10270519	10270519	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	174	488	0	ENST00000340748.4:c.1121C>T	p.Ala374Val	p.A374V	ENST00000340748		374	gCg/gTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302830	15302830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	247	613	1	ENST00000263388.2:c.620G>A	p.Arg207His	p.R207H	ENST00000263388	NM_000435.2	207	cGt/cAt																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257890	19257890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	246	641	1	ENST00000162023.5:c.496C>T	p.Arg166Cys	p.R166C	ENST00000162023		166	Cgc/Tgc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	205	719	7	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36218480	36218480	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	87	454	0	ENST00000222270.7:c.4259T>G	p.Leu1420Arg	p.L1420R	ENST00000222270	NM_014727.1	1420	cTg/cGg																																																																														
AKT2	0	MSKCC	GRCh37	19	40740959	40740960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	211	617	0	ENST00000392038.2:c.1358dup	p.Asp454Ter	p.D454*	ENST00000392038	NM_001626.4	453	cct/ccCt																																																																														
RRAS	0	MSKCC	GRCh37	19	50139919	50139919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	246	649	0	ENST00000246792.3:c.410T>C	p.Val137Ala	p.V137A	ENST00000246792	NM_006270.3	137	gTt/gCt																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	132	490	1	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
MYCN	0	MSKCC	GRCh37	2	16082761	16082761	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	28	73	0	ENST00000281043.3:c.575T>A	p.Val192Asp	p.V192D	ENST00000281043	NM_005378.4	192	gTc/gAc																																																																														
INHA	0	MSKCC	GRCh37	2	220437222	220437223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	176	686	0	ENST00000243786.2:c.132dup	p.Ala45ArgfsTer29	p.A45Rfs*29	ENST00000243786	NM_002191.3	42	-/C																																																																														
IRS1	0	MSKCC	GRCh37	2	227660879	227660879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	168	371	0	ENST00000305123.5:c.2576C>T	p.Thr859Met	p.T859M	ENST00000305123	NM_005544.2	859	aCg/aTg																																																																														
IRS1	0	MSKCC	GRCh37	2	227661836	227661836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	221	580	0	ENST00000305123.5:c.1619C>T	p.Pro540Leu	p.P540L	ENST00000305123	NM_005544.2	540	cCg/cTg																																																																														
TOP1	0	MSKCC	GRCh37	20	39750723	39750723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	105	291	0	ENST00000361337.2:c.2123G>A	p.Arg708Gln	p.R708Q	ENST00000361337	NM_003286.2	708	cGa/cAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	30	332	2	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																																																														
U2AF1	0	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	175	546	0	ENST00000291552.4:c.648_653delCGGTGG	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																														
CRKL	0	MSKCC	GRCh37	22	21288333	21288333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	200	555	0	ENST00000354336.3:c.578G>T	p.Arg193Met	p.R193M	ENST00000354336	NM_005207.3	193	aGg/aTg																																																																														
MAPK1	0	MSKCC	GRCh37	22	22221726	22221726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	11	20	0	ENST00000215832.6:c.5C>T	p.Ala2Val	p.A2V	ENST00000215832	NM_002745.4	2	gCg/gTg																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24158966	24158966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	155	452	0	ENST00000263121.7:c.638T>C	p.Met213Thr	p.M213T	ENST00000263121	NM_003073.3	213	aTg/aCg																																																																														
CHEK2	0	MSKCC	GRCh37	22	29130561	29130561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	154	434	0	ENST00000328354.6:c.149G>A	p.Ser50Asn	p.S50N	ENST00000328354	NM_007194.3	50	aGc/aAc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	227	294	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41279558	41279558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	136	361	0	ENST00000349496.5:c.2128C>T	p.Arg710Cys	p.R710C	ENST00000349496	NM_001904.3	710	Cgc/Tgc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52661290	52661290	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	30	286	0	ENST00000394830.3:c.1540del	p.Ser514ValfsTer5	p.S514Vfs*5	ENST00000394830	NM_018313.4	514	Agt/gt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	97	359	1	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	60	215	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
BCL6	0	MSKCC	GRCh37	3	187451328	187451328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	113	233	1	ENST00000232014.4:c.154G>A	p.Ala52Thr	p.A52T	ENST00000232014	NM_001130845.1	52	Gcc/Acc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1941480	1941482	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	143	384	0	ENST00000382891.5:c.1858_1860del	p.Ser620del	p.S620del	ENST00000382891	NM_133335.3	619	cCTTct/cct																																																																														
TET2	0	MSKCC	GRCh37	4	106182961	106182961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	32	315	1	ENST00000380013.4:c.4000G>A	p.Ala1334Thr	p.A1334T	ENST00000380013	NM_001127208.2	1334	Gca/Aca																																																																														
TET2	0	MSKCC	GRCh37	4	106197552	106197552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	38	310	0	ENST00000380013.4:c.5885C>A	p.Pro1962His	p.P1962H	ENST00000380013	NM_001127208.2	1962	cCc/cAc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143181693	143181693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	41	332	0	ENST00000262992.4:c.640G>A	p.Ala214Thr	p.A214T	ENST00000262992	NM_001101669.1	214	Gcc/Acc																																																																														
MSH3	0	MSKCC	GRCh37	5	80057492	80057492	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	18	239	0	ENST00000265081.6:c.1896del	p.Lys632AsnfsTer9	p.K632Nfs*9	ENST00000265081	NM_002439.4	631	Aaa/aa																																																																														
CSF1R	0	MSKCC	GRCh37	5	149460436	149460436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	199	494	1	ENST00000286301.3:c.201C>A	p.Ser67Arg	p.S67R	ENST00000286301	NM_005211.3	67	agC/agA																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522651	176522651	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138800021		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	244	586	2	ENST00000292408.4:c.1748C>T	p.Pro583Leu	p.P583L	ENST00000292408	NM_213647.1	583	cCg/cTg																																																																														
NSD1	0	MSKCC	GRCh37	5	176562199	176562199	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	181	538	0	ENST00000439151.2:c.95T>G	p.Phe32Cys	p.F32C	ENST00000439151	NM_022455.4	32	tTc/tGc																																																																														
NSD1	0	MSKCC	GRCh37	5	176638803	176638803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	230	527	0	ENST00000439151.2:c.3403C>T	p.Pro1135Ser	p.P1135S	ENST00000439151	NM_022455.4	1135	Cca/Tca																																																																														
IRF4	0	MSKCC	GRCh37	6	405044	405044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	28	316	0	ENST00000380956.4:c.1126C>T	p.Arg376Cys	p.R376C	ENST00000380956	NM_001195286.1	376	Cgc/Tgc																																																																														
MDC1	0	MSKCC	GRCh37	6	30673000	30673000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	116	665	0	ENST00000376406.3:c.3960G>T	p.Lys1320Asn	p.K1320N	ENST00000376406	NM_014641.2	1320	aaG/aaT																																																																														
HLA-B	0	MSKCC	GRCh37	6	31322882	31322882	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	283	450	1	ENST00000412585.2:c.1012+2T>C		p.X338_splice	ENST00000412585	NM_005514.6	338																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32181463	32181463	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	32	471	0	ENST00000375023.3:c.2320+2T>C		p.X774_splice	ENST00000375023	NM_004557.3	774																																																																															
FYN	0	MSKCC	GRCh37	6	112029219	112029219	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	128	287	0	ENST00000368678.4:c.349G>T	p.Gly117Ter	p.G117*	ENST00000368678		117	Gga/Tga																																																																														
ROS1	0	MSKCC	GRCh37	6	117681120	117681120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	136	420	1	ENST00000368508.3:c.3500delT	p.Leu1167Ter	p.L1167*	ENST00000368508	NM_002944.2	1167	tTa/ta																																																																														
ROS1	0	MSKCC	GRCh37	6	117710512	117710512	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	51	151	0	ENST00000368508.3:c.1759+1G>A		p.X587_splice	ENST00000368508	NM_002944.2	587																																																																															
TNFAIP3	0	MSKCC	GRCh37	6	138200338	138200338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	179	331	0	ENST00000237289.4:c.1756G>A	p.Ala586Thr	p.A586T	ENST00000237289	NM_001270507.1	586	Gcc/Acc																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138201243	138201243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	125	357	1	ENST00000237289.4:c.1942G>T	p.Ala648Ser	p.A648S	ENST00000237289	NM_001270507.1	648	Gcg/Tcg																																																																														
ESR1	0	MSKCC	GRCh37	6	152201808	152201808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	45	340	0	ENST00000206249.3:c.662G>T	p.Cys221Phe	p.C221F	ENST00000206249	NM_000125.3	221	tGt/tTt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528284	157528284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	185	523	0	ENST00000346085.5:c.6013del	p.Val2005TrpfsTer16	p.V2005Wfs*16	ENST00000346085	NM_020732.3	2003	aaG/aa																																																																														
PARK2	0	MSKCC	GRCh37	6	162683658	162683658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	163	384	0	ENST00000366898.1:c.311G>A	p.Arg104Gln	p.R104Q	ENST00000366898	NM_004562.2	104	cGg/cAg																																																																														
PMS2	0	MSKCC	GRCh37	7	6027150	6027150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	14	12	0	ENST00000265849.7:c.1246T>C	p.Ser416Pro	p.S416P	ENST00000265849	NM_000535.5	416	Tcc/Ccc																																																																														
PREX2	0	MSKCC	GRCh37	8	68934323	68934323	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	114	522	0	ENST00000288368.4:c.393del	p.Lys131AsnfsTer9	p.K131Nfs*9	ENST00000288368	NM_024870.2	130	cAa/ca																																																																														
PRDM14	0	MSKCC	GRCh37	8	70980542	70980542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	60	561	0	ENST00000276594.2:c.835A>G	p.Arg279Gly	p.R279G	ENST00000276594	NM_024504.3	279	Agg/Ggg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981892	70981892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	353	594	1	ENST00000276594.2:c.204del	p.Phe69SerfsTer10	p.F69Sfs*10	ENST00000276594	NM_024504.3	68	ccC/cc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738411	145738416	+	inframe_deletion	In_Frame_Del	DEL	GGTGCA	GGTGCA	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	230	580	0	ENST00000428558.2:c.2569_2574delTGCACC	p.Cys857_Thr858del	p.C857_T858del	ENST00000428558	NM_004260.3	857	TGCACC/-																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485971	8485971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	114	383	0	ENST00000356435.5:c.2846G>A	p.Gly949Asp	p.G949D	ENST00000356435		949	gGc/gAc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	137	447	1	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	41	445	1	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98218572	98218572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	131	336	2	ENST00000331920.6:c.3292G>A	p.Val1098Ile	p.V1098I	ENST00000331920	NM_000264.3	1098	Gtt/Att																																																																														
TRAF2	0	MSKCC	GRCh37	9	139811047	139811047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141070190		P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	172	470	4	ENST00000247668.2:c.658G>A	p.Ala220Thr	p.A220T	ENST00000247668	NM_021138.3	220	Gcc/Acc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412133	63412133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	63	321	0	ENST00000330258.3:c.1034C>T	p.Ala345Val	p.A345V	ENST00000330258	NM_152424.3	345	gCc/gTc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	227	238	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
BTK	0	MSKCC	GRCh37	X	100625048	100625048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	26	207	0	ENST00000308731.7:c.329C>A	p.Pro110His	p.P110H	ENST00000308731	NM_000061.2	110	cCt/cAt																																																																														
STAG2	0	MSKCC	GRCh37	X	123220540	123220540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	280	255	0	ENST00000218089.9:c.3197G>A	p.Arg1066Gln	p.R1066Q	ENST00000218089	NM_001042749.1	1066	cGg/cAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	156	392	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	218	474	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	87	254	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	190	480	2	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
TOP1	0	MSKCC	GRCh37	20	39750363	39750363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	152	362	1	ENST00000361337.2:c.1978G>A	p.Asp660Asn	p.D660N	ENST00000361337	NM_003286.2	660	Gat/Aat																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	150	463	1	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
GATA3	0	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	220	586	2	ENST00000346208.3:c.708dupC	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																																																														
RHOA	0	MSKCC	GRCh37	3	49412958	49412958	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	290	572	0	ENST00000418115.1:c.65T>G	p.Leu22Arg	p.L22R	ENST00000418115	NM_001664.2	22	cTc/cGc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710652	114710652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	182	447	2	ENST00000543371.1:c.137C>A	p.Ser46Ter	p.S46*	ENST00000543371	NM_001198531.1	46	tCg/tAg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99154399	99154399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	196	489	3	ENST00000074304.5:c.545del	p.Pro182LeufsTer2	p.P182Lfs*2	ENST00000074304	NM_001134224.1	181	Ccc/cc																																																																														
TBX3	0	MSKCC	GRCh37	12	115109746	115109746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	246	590	0	ENST00000257566.3:c.2132G>A	p.Cys711Tyr	p.C711Y	ENST00000257566	NM_016569.3	711	tGc/tAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49448408	49448408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	238	526	5	ENST00000301067.7:c.303del	p.Ser102AlafsTer28	p.S102Afs*28	ENST00000301067	NM_003482.3	101	ggG/gg																																																																														
MTOR	0	MSKCC	GRCh37	1	11188512	11188512	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	168	342	0	ENST00000361445.4:c.5909A>G	p.Gln1970Arg	p.Q1970R	ENST00000361445	NM_004958.3	1970	cAg/cGg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692817	89692817	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	122	209	1	ENST00000371953.3:c.301del	p.Ile101SerfsTer12	p.I101Sfs*12	ENST00000371953	NM_000314.4	101	Atc/tc																																																																														
PTEN	0	MSKCC	GRCh37	10	89725041	89725052	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGGTGAAGCTG	TAGGTGAAGCTG	-			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	95	241	0	ENST00000371953.3:c.1027-1_1037del		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
ERBB3	0	MSKCC	GRCh37	12	56481857	56481857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	296	545	0	ENST00000267101.3:c.785C>G	p.Pro262Arg	p.P262R	ENST00000267101	NM_001982.3	262	cCt/cGt																																																																														
POLE	0	MSKCC	GRCh37	12	133209095	133209095	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	176	390	0	ENST00000320574.5:c.6137-1G>T		p.X2046_splice	ENST00000320574	NM_006231.2	2046																																																																															
SPRED1	0	MSKCC	GRCh37	15	38591712	38591713	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	195	387	1	ENST00000299084.4:c.177dup	p.Ile60TyrfsTer18	p.I60Yfs*18	ENST00000299084	NM_152594.2	57	-/T																																																																														
FLCN	0	MSKCC	GRCh37	17	17118394	17118394	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	227	650	0	ENST00000285071.4:c.1443del	p.Ile482SerfsTer2	p.I482Sfs*2	ENST00000285071	NM_144997.5	481	acC/ac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223887	36223887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	311	676	0	ENST00000222270.7:c.6437G>A	p.Ser2146Asn	p.S2146N	ENST00000222270	NM_014727.1	2146	aGc/aAc																																																																														
MSH2	0	MSKCC	GRCh37	2	47637513	47637513	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	128	369	0	ENST00000233146.2:c.645+2T>C		p.X215_splice	ENST00000233146	NM_000251.2	215																																																																															
HIST1H3B	0	MSKCC	GRCh37	6	26031943	26031943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	147	299	0	ENST00000244661.2:c.346A>G	p.Lys116Glu	p.K116E	ENST00000244661	NM_003537.3	116	Aag/Gag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412669	139412700	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGGGTTGGTGTCGCAGTTGGAGCCCTCGTT	ACAGGGTTGGTGTCGCAGTTGGAGCCCTCGTT	-			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	207	673	2	ENST00000277541.6:c.1144_1175del	p.Asn382GlnfsTer23	p.N382Qfs*23	ENST00000277541	NM_017617.3	382	AACGAGGGCTCCAACTGCGACACCAACCCTGTc/c																																																																														
CRLF2	0	MSKCC	GRCh37	X	1317442	1317442	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	237	548	2				ENST00000381566																																																																																	
PIK3R1	0	MSKCC	GRCh37	5	67591122	67591134	+	protein_altering_variant	In_Frame_Del	DEL	AGCTGAGAAAGAC	AGCTGAGAAAGAC	T			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	105	312	0	ENST00000274335.5:c.1715_1727delinsT	p.Gln572_Thr576delinsLeu	p.Q572_T576delinsL	ENST00000274335		572	cAGCTGAGAAAGACg/cTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993831	72993831	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CG			P-0029983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	105	396	0	ENST00000268489.5:c.214delinsCG	p.Ser72ArgfsTer47	p.S72Rfs*47	ENST00000268489	NM_006885.3	72	Tcc/CGcc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	113	252	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936393		P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	113	263	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																														
ATM	0	MSKCC	GRCh37	11	108119795	108119795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	85	209	0	ENST00000278616.4:c.1201C>T	p.Gln401Ter	p.Q401*	ENST00000278616	NM_000051.3	401	Cag/Tag																																																																														
MST1R	0	MSKCC	GRCh37	3	49940819	49940819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	42	476	2	ENST00000296474.3:c.224G>A	p.Arg75His	p.R75H	ENST00000296474	NM_002447.2	75	cGc/cAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056207	27056207	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	78	422	1	ENST00000324856.7:c.1203C>G	p.Tyr401Ter	p.Y401*	ENST00000324856	NM_006015.4	401	taC/taG																																																																														
EED	0	MSKCC	GRCh37	11	85989034	85989034	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	64	295	0	ENST00000263360.6:c.1199+1G>T		p.X400_splice	ENST00000263360	NM_003797.3	400																																																																															
ATM	0	MSKCC	GRCh37	11	108119700	108119700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	85	168	0	ENST00000278616.4:c.1106C>G	p.Ser369Cys	p.S369C	ENST00000278616	NM_000051.3	369	tCt/tGt																																																																														
ATM	0	MSKCC	GRCh37	11	108216630	108216630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	78	239	0	ENST00000278616.4:c.8579C>G	p.Ser2860Cys	p.S2860C	ENST00000278616	NM_000051.3	2860	tCt/tGt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266484	198266484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	137	283	0	ENST00000335508.6:c.2352G>A	p.Met784Ile	p.M784I	ENST00000335508	NM_012433.2	784	atG/atA																																																																														
SF3B1	0	MSKCC	GRCh37	2	198273251	198273251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	168	388	0	ENST00000335508.6:c.959G>A	p.Gly320Glu	p.G320E	ENST00000335508	NM_012433.2	320	gGa/gAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385169	41385169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	58	492	0	ENST00000373198.4:c.792G>T	p.Lys264Asn	p.K264N	ENST00000373198	NM_133170.3	264	aaG/aaT																																																																														
APC	0	MSKCC	GRCh37	5	112179000	112179000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	28	265	0	ENST00000257430.4:c.7709C>A	p.Ser2570Ter	p.S2570*	ENST00000257430	NM_000038.5	2570	tCa/tAa																																																																														
ROS1	0	MSKCC	GRCh37	6	117715354	117715354	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	41	304	0	ENST00000368508.3:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000368508	NM_002944.2	379	Caa/Taa																																																																														
CD274	0	MSKCC	GRCh37	9	5457255	5457255	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	128	286	0	ENST00000381577.3:c.229C>T	p.Gln77Ter	p.Q77*	ENST00000381577	NM_014143.3	77	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	614	644	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740479	58740479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	366	565	1	ENST00000305921.3:c.1384C>T	p.Gln462Ter	p.Q462*	ENST00000305921	NM_003620.3	462	Caa/Taa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945071	151945071	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0029985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	29	621	0	ENST00000262189.6:c.2448C>A	p.Tyr816Ter	p.Y816*	ENST00000262189	NM_170606.2	816	taC/taA																																																																														
GLI1	0	MSKCC	GRCh37	12	57860126	57860126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	507	619	0	ENST00000228682.2:c.866T>C	p.Val289Ala	p.V289A	ENST00000228682	NM_005269.2	289	gTg/gCg																																																																														
RB1	0	MSKCC	GRCh37	13	49027108	49027131	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTCATCATGTTTCATATAGGAT	ATTTCATCATGTTTCATATAGGAT	-			P-0029985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	70	258	0	ENST00000267163.4:c.1696-21_1698del		p.X566_splice	ENST00000267163	NM_000321.2	566																																																																															
PIK3C3	0	MSKCC	GRCh37	18	39647398	39647398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	335	413	0	ENST00000262039.4:c.2570A>G	p.His857Arg	p.H857R	ENST00000262039	NM_002647.2	857	cAt/cGt																																																																														
FAT1	0	MSKCC	GRCh37	4	187517874	187517874	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	130	423	1	ENST00000441802.2:c.12820G>T	p.Glu4274Ter	p.E4274*	ENST00000441802	NM_005245.3	4274	Gaa/Taa																																																																														
FAT1	0	MSKCC	GRCh37	4	187557332	187557332	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0029985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	166	557	1	ENST00000441802.2:c.4030G>T	p.Glu1344Ter	p.E1344*	ENST00000441802	NM_005245.3	1344	Gaa/Taa																																																																														
XRCC2	0	MSKCC	GRCh37	7	152346092	152346092	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144079294		P-0029985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	131	460	0	ENST00000359321.1:c.478G>A	p.Val160Ile	p.V160I	ENST00000359321	NM_005431.1	160	Gtc/Atc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0029986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	46	515	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0029986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	35	294	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0029986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	35	294	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	70	429	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	279	434	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	239	218	0				ENST00000310581	NM_198253.2																																																																																
ARAF	0	MSKCC	GRCh37	X	47426127	47426127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	515	320	0	ENST00000377045.4:c.647C>T	p.Pro216Leu	p.P216L	ENST00000377045	NM_001654.4	216	cCc/cTc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32190477	32190477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	228	652	0	ENST00000375023.3:c.262C>A	p.Leu88Ile	p.L88I	ENST00000375023	NM_004557.3	88	Cta/Ata																																																																														
ROS1	0	MSKCC	GRCh37	6	117662655	117662655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	330	387	0	ENST00000368508.3:c.4810C>T	p.Pro1604Ser	p.P1604S	ENST00000368508	NM_002944.2	1604	Cct/Tct																																																																														
FGFR4	0	MSKCC	GRCh37	5	176517785	176517785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	432	565	0	ENST00000292408.4:c.395C>T	p.Ser132Phe	p.S132F	ENST00000292408	NM_213647.1	132	tCc/tTc																																																																														
IGF2	0	MSKCC	GRCh37	11	2156662	2156662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	238	567	0	ENST00000434045.2:c.260C>T	p.Thr87Ile	p.T87I	ENST00000434045	NM_001127598.1	87	aCc/aTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46205275	46205282	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGCTT	CACAGCTT	-			P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	294	395	0	ENST00000334344.6:c.360_367del	p.Gln121TyrfsTer30	p.Q121Yfs*30	ENST00000334344	NM_152641.2	120	cCACAGCTT/c																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987066	36987066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	464	457	5	ENST00000354822.5:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000354822	NM_001079668.2	208	cGa/cAa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031925	10031925	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	175	467	0	ENST00000330684.3:c.898A>G	p.Thr300Ala	p.T300A	ENST00000330684	NM_001134407.1	300	Acc/Gcc																																																																														
CD79A	0	MSKCC	GRCh37	19	42381385	42381385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	178	474	0	ENST00000221972.3:c.11G>A	p.Gly4Asp	p.G4D	ENST00000221972	NM_021601.3	4	gGt/gAt																																																																														
U2AF1	0	MSKCC	GRCh37	21	44514780	44514781	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	165	438	2	ENST00000291552.4:c.466_467delinsTT	p.Arg156Phe	p.R156F	ENST00000291552	NM_006758.2	156	CGt/TTt																																																																														
FAT1	0	MSKCC	GRCh37	4	187630710	187630710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	183	531	0	ENST00000441802.2:c.272G>T	p.Gly91Val	p.G91V	ENST00000441802	NM_005245.3	91	gGa/gTa																																																																														
SMO	0	MSKCC	GRCh37	7	128850355	128850355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	353	468	0	ENST00000249373.3:c.1618G>A	p.Ala540Thr	p.A540T	ENST00000249373	NM_005631.4	540	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0029991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	28	189	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0029991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	153	618	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100592	157100592	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	21	236	0	ENST00000346085.5:c.1529T>C	p.Met510Thr	p.M510T	ENST00000346085	NM_020732.3	510	aTg/aCg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375209	118375209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	100	395	0	ENST00000534358.1:c.8602G>A	p.Glu2868Lys	p.E2868K	ENST00000534358	NM_005933.3	2868	Gag/Aag																																																																														
CYLD	0	MSKCC	GRCh37	16	50783844	50783844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	60	579	1	ENST00000398568.2:c.235C>T	p.His79Tyr	p.H79Y	ENST00000398568	NM_001042412.1	79	Cat/Tat																																																																														
JAK3	0	MSKCC	GRCh37	19	17942554	17942554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	145	640	0	ENST00000458235.1:c.2734G>T	p.Asp912Tyr	p.D912Y	ENST00000458235	NM_000215.3	912	Gac/Tac																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808928	1808928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	136	641	0	ENST00000260795.2:c.2360C>T	p.Ser787Phe	p.S787F	ENST00000260795		787	tCc/tTc																																																																														
RBM10	0	MSKCC	GRCh37	X	47028865	47028866	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0029991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	133	597	0	ENST00000329236.7:c.170dup	p.Tyr57Ter	p.Y57*	ENST00000329236	NM_001204466.1	57	tat/tAat																																																																														
ARID1A	0	MSKCC	GRCh37	1	27058033	27058033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	93	620	0	ENST00000324856.7:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000324856	NM_006015.4	581	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0029997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	91	363	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0029998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	102	339	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0029998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	265	682	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RB1	0	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	229	404	1	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0029998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	36	452	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175982	112175982	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0029998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	78	281	0	ENST00000257430.4:c.4691T>G	p.Leu1564Ter	p.L1564*	ENST00000257430	NM_000038.5	1564	tTa/tGa																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101908873	101908873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200595614		P-0029998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	140	517	1	ENST00000374994.4:c.1237C>T	p.Arg413Ter	p.R413*	ENST00000374994	NM_004612.2	413	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	CA			P-0029998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	351	516	0	ENST00000256078.4:c.182_183delAAinsTG	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTG																																																																														
ALK	0	MSKCC	GRCh37	2	29451807	29451807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0029998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	257	749	0	ENST00000389048.3:c.2758G>T	p.Gly920Cys	p.G920C	ENST00000389048	NM_004304.4	920	Ggt/Tgt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467476	66467476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	42	306	0	ENST00000273854.3:c.793C>T	p.His265Tyr	p.H265Y	ENST00000273854	NM_004439.5	265	Cat/Tat																																																																														
EPHA7	0	MSKCC	GRCh37	6	93979240	93979240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	115	333	0	ENST00000369303.4:c.1588C>A	p.Leu530Ile	p.L530I	ENST00000369303	NM_004440.3	530	Ctt/Att																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900168	101900168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0029998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	74	279	0	ENST00000374994.4:c.602T>C	p.Ile201Thr	p.I201T	ENST00000374994	NM_004612.2	201	aTt/aCt																																																																														
ABL1	0	MSKCC	GRCh37	9	133760742	133760742	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0029998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	177	796	0	ENST00000318560.5:c.3065T>G	p.Ile1022Ser	p.I1022S	ENST00000318560	NM_005157.4	1022	aTc/aGc																																																																														
STAG2	0	MSKCC	GRCh37	X	123224792	123224792	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	137	474	0	ENST00000218089.9:c.3556C>T	p.Arg1186Ter	p.R1186*	ENST00000218089	NM_001042749.1	1186	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	185	386	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	280	681	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																														
APC	0	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	65	190	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803144	1803144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	47	715	1	ENST00000260795.2:c.496G>A	p.Val166Met	p.V166M	ENST00000260795		166	Gtg/Atg																																																																														
RET	0	MSKCC	GRCh37	10	43609969	43609969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	93	791	1	ENST00000355710.3:c.1921G>A	p.Ala641Thr	p.A641T	ENST00000355710	NM_020975.4	641	Gct/Act																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114900942	114900942	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	52	422	0	ENST00000543371.1:c.553-1del		p.X185_splice	ENST00000543371	NM_001198531.1	185																																																																															
RTEL1	0	MSKCC	GRCh37	20	62326776	62326776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1465	78	842	0	ENST00000508582.2:c.3667G>T	p.Asp1223Tyr	p.D1223Y	ENST00000508582		1223	Gat/Tat																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245344	153245344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0029999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	98	323	0	ENST00000281708.4:c.1847C>A	p.Thr616Lys	p.T616K	ENST00000281708	NM_033632.3	616	aCa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	326	441	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	75	427	0				ENST00000310581	NM_198253.2																																																																																
SETD2	0	MSKCC	GRCh37	3	47098781	47098782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	91	704	0	ENST00000409792.3:c.6492dup	p.Ala2165CysfsTer19	p.A2165Cfs*19	ENST00000409792	NM_014159.6	2164	-/T																																																																														
ATRX	0	MSKCC	GRCh37	X	76829764	76829764	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	80	617	0	ENST00000373344.5:c.6277C>T	p.Gln2093Ter	p.Q2093*	ENST00000373344	NM_000489.3	2093	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446106	49446106	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	118	856	0	ENST00000301067.7:c.1360G>C	p.Glu454Gln	p.E454Q	ENST00000301067	NM_003482.3	454	Gag/Cag																																																																														
LATS2	0	MSKCC	GRCh37	13	21555650	21555650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	88	553	0	ENST00000382592.4:c.2620G>T	p.Val874Leu	p.V874L	ENST00000382592	NM_014572.2	874	Gtg/Ttg																																																																														
LATS2	0	MSKCC	GRCh37	13	21557745	21557746	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	101	668	1	ENST00000382592.4:c.2099_2100delinsTT	p.Arg700Ile	p.R700I	ENST00000382592	NM_014572.2	700	aGG/aTT																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778000	3778000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	114	938	1	ENST00000262367.5:c.7048C>T	p.Gln2350Ter	p.Q2350*	ENST00000262367	NM_004380.2	2350	Cag/Tag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349314	89349315	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTT			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	111	960	0	ENST00000301030.4:c.3632_3635dup	p.Ser1213ArgfsTer21	p.S1213Rfs*21	ENST00000301030	NM_001256183.1	1212	gag/gaAAGAg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11113720	11113720	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	88	564	0	ENST00000344626.4:c.1828A>T	p.Ser610Cys	p.S610C	ENST00000344626	NM_003072.3	610	Agc/Tgc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15289895	15289895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	126	794	0	ENST00000263388.2:c.3659G>C	p.Arg1220Pro	p.R1220P	ENST00000263388	NM_000435.2	1220	cGg/cCg																																																																														
ATR	0	MSKCC	GRCh37	3	142215961	142215961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	60	426	0	ENST00000350721.4:c.5632G>C	p.Glu1878Gln	p.E1878Q	ENST00000350721	NM_001184.3	1878	Gaa/Caa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55136818	55136818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	57	387	0	ENST00000257290.5:c.1140G>T	p.Lys380Asn	p.K380N	ENST00000257290	NM_006206.4	380	aaG/aaT																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55146484	55146484	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	25	240	0	ENST00000257290.5:c.2158T>A	p.Tyr720Asn	p.Y720N	ENST00000257290	NM_006206.4	720	Tat/Aat																																																																														
TERT	0	MSKCC	GRCh37	5	1293829	1293829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	125	919	0	ENST00000310581.5:c.1172C>A	p.Pro391His	p.P391H	ENST00000310581	NM_198253.2	391	cCc/cAc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56176542	56176542	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	71	425	0	ENST00000399503.3:c.2092A>T	p.Thr698Ser	p.T698S	ENST00000399503	NM_005921.1	698	Aca/Tca																																																																														
CARD11	0	MSKCC	GRCh37	7	2959214	2959214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	95	622	0	ENST00000396946.4:c.2302G>A	p.Gly768Ser	p.G768S	ENST00000396946	NM_032415.4	768	Ggc/Agc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467756	50467756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	80	576	0	ENST00000331340.3:c.991G>A	p.Val331Met	p.V331M	ENST00000331340	NM_006060.4	331	Gtg/Atg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453117	140453117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	86	440	0	ENST00000288602.6:c.1818del	p.Ser607ProfsTer43	p.S607Pfs*43	ENST00000288602	NM_004333.4	606	ggG/gg																																																																														
BCOR	0	MSKCC	GRCh37	X	39934420	39934420	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	64	477	0	ENST00000378444.4:c.179C>G	p.Thr60Arg	p.T60R	ENST00000378444	NM_001123385.1	60	aCg/aGg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223412	53223412	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	90	749	0	ENST00000375401.3:c.3947A>T	p.Gln1316Leu	p.Q1316L	ENST00000375401	NM_004187.3	1316	cAg/cTg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226078	53226078	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	62	739	0	ENST00000375401.3:c.2771A>T	p.Gln924Leu	p.Q924L	ENST00000375401	NM_004187.3	924	cAg/cTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412630	63412630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	95	553	2	ENST00000330258.3:c.537C>A	p.His179Gln	p.H179Q	ENST00000330258	NM_152424.3	179	caC/caA																																																																														
ATRX	0	MSKCC	GRCh37	X	76909677	76909677	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0030000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	34	358	0	ENST00000373344.5:c.4228G>T	p.Ala1410Ser	p.A1410S	ENST00000373344	NM_000489.3	1410	Gca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0030008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	188	635	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211823	36211823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0030008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	144	787	1	ENST00000222270.7:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000222270	NM_014727.1	525	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	306	436	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	470	729	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101908797	101908827	+	frameshift_variant	Frame_Shift_Del	DEL	CATAAATATGAAACATTTTGAATCCTTCAAA	CATAAATATGAAACATTTTGAATCCTTCAAA	-			P-0028419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	230	400	0	ENST00000374994.4:c.1162_1192del	p.Ile388ValfsTer9	p.I388Vfs*9	ENST00000374994	NM_004612.2	387	tcCATAAATATGAAACATTTTGAATCCTTCAAA/tc																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	167	791	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	70	522	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RET	0	MSKCC	GRCh37	10	43607597	43607597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	135	954	4	ENST00000355710.3:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000355710	NM_020975.4	525	Cgg/Tgg																																																																														
MYCN	0	MSKCC	GRCh37	2	16082286	16082286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	222	983	0	ENST00000281043.3:c.100G>A	p.Asp34Asn	p.D34N	ENST00000281043	NM_005378.4	34	Gac/Aac																																																																														
KDM6A	0	MSKCC	GRCh37	X	44919308	44919311	+	frameshift_variant	Frame_Shift_Del	DEL	AACT	AACT	-			P-0028425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	93	254	0	ENST00000377967.4:c.1238_1241del	p.Thr413AsnfsTer25	p.T413Nfs*25	ENST00000377967	NM_021140.2	412	aaAACT/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	300	514	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	335	466	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	335	466	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	335	466	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	479	867	1	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																																																														
RNF43	0	MSKCC	GRCh37	17	56440946	56440946	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	334	618	0	ENST00000407977.2:c.391G>T	p.Glu131Ter	p.E131*	ENST00000407977		131	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7579328	7579328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	132	487	0	ENST00000269305.4:c.359A>G	p.Lys120Arg	p.K120R	ENST00000269305	NM_001126112.2	120	aAg/aGg																																																																														
STAG2	0	MSKCC	GRCh37	X	123200088	123200088	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	33	172	0	ENST00000218089.9:c.2160C>G	p.Ile720Met	p.I720M	ENST00000218089	NM_001042749.1	720	atC/atG																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	81	393	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0028431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	86	346	0				ENST00000310581	NM_198253.2																																																																																
PIK3C2G	0	MSKCC	GRCh37	12	18576953	18576953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	65	404	1	ENST00000266497.5:c.2361G>T	p.Gln787His	p.Q787H	ENST00000266497		787	caG/caT																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831288	72831288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	31	321	0	ENST00000268489.5:c.5293G>A	p.Ala1765Thr	p.A1765T	ENST00000268489	NM_006885.3	1765	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	628	494	1	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
ARID1A	0	MSKCC	GRCh37	1	27097695	27097699	+	frameshift_variant	Frame_Shift_Del	DEL	AGTAT	AGTAT	-			P-0028432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	223	435	0	ENST00000324856.7:c.3285_3289del	p.Gln1095HisfsTer8	p.Q1095Hfs*8	ENST00000324856	NM_006015.4	1095	cAGTAT/c																																																																														
FLT4	0	MSKCC	GRCh37	5	180048162	180048162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	591	557	0	ENST00000261937.6:c.2111C>T	p.Ala704Val	p.A704V	ENST00000261937	NM_182925.4	704	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	36	543	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
DDR2	0	MSKCC	GRCh37	1	162749964	162749964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	68	422	0	ENST00000367921.3:c.2496G>C	p.Trp832Cys	p.W832C	ENST00000367921	NM_006182.2	832	tgG/tgC																																																																														
H3F3A	0	MSKCC	GRCh37	1	226252069	226252069	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	45	195	0	ENST00000366813.1:c.17A>C	p.Gln6Pro	p.Q6P	ENST00000366813		6	cAg/cCg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118378311	118378311	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	59	473	0	ENST00000534358.1:c.10822G>C	p.Gly3608Arg	p.G3608R	ENST00000534358	NM_005933.3	3608	Ggg/Cgg																																																																														
SLX4	0	MSKCC	GRCh37	16	3640996	3640996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	56	773	0	ENST00000294008.3:c.2643G>C	p.Glu881Asp	p.E881D	ENST00000294008	NM_032444.2	881	gaG/gaC																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029158	14029158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	31	322	0	ENST00000311895.7:c.1369G>A	p.Asp457Asn	p.D457N	ENST00000311895	NM_005236.2	457	Gac/Aac																																																																														
JAK3	0	MSKCC	GRCh37	19	17946021	17946021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	36	492	0	ENST00000458235.1:c.1918G>T	p.Asp640Tyr	p.D640Y	ENST00000458235	NM_000215.3	640	Gac/Tac																																																																														
INPP4A	0	MSKCC	GRCh37	2	99163158	99163158	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0028433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	23	386	0	ENST00000074304.5:c.1163+1G>C		p.X388_splice	ENST00000074304	NM_001134224.1	388																																																																															
AURKA	0	MSKCC	GRCh37	20	54961480	54961480	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0028433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	73	393	0	ENST00000312783.6:c.152C>G	p.Ser51Ter	p.S51*	ENST00000312783	NM_198436.1	51	tCa/tGa																																																																														
MDC1	0	MSKCC	GRCh37	6	30671805	30671805	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	51	567	0	ENST00000376406.3:c.5155A>G	p.Ser1719Gly	p.S1719G	ENST00000376406	NM_014641.2	1719	Agt/Ggt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484163	8484163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	130	418	0	ENST00000356435.5:c.3369G>A	p.Met1123Ile	p.M1123I	ENST00000356435		1123	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0028439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	117	314	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0028439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	128	252	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	94	346	0	ENST00000371953.3:c.389delG	p.Arg130GlnfsTer4	p.R130Qfs*4	ENST00000371953	NM_000314.4	130	cGa/ca																																																																														
PTEN	0	MSKCC	GRCh37	10	89692778	89692778	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	158	249	0	ENST00000371953.3:c.262T>G	p.Tyr88Asp	p.Y88D	ENST00000371953	NM_000314.4	88	Tat/Gat																																																																														
FLT1	0	MSKCC	GRCh37	13	28963980	28963980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	121	284	0	ENST00000282397.4:c.1922T>C	p.Val641Ala	p.V641A	ENST00000282397	NM_002019.4	641	gTa/gCa																																																																														
SOCS1	0	MSKCC	GRCh37	16	11349136	11349136	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	123	246	0	ENST00000332029.2:c.200T>G	p.Ile67Ser	p.I67S	ENST00000332029	NM_003745.1	67	aTc/aGc																																																																														
CTCF	0	MSKCC	GRCh37	16	67660513	67660513	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0028439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	226	393	0	ENST00000264010.4:c.1413C>G	p.Tyr471Ter	p.Y471*	ENST00000264010	NM_006565.3	471	taC/taG																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15296181	15296181	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144935367		P-0028439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	298	585	0	ENST00000263388.2:c.2183G>A	p.Arg728His	p.R728H	ENST00000263388	NM_000435.2	728	cGc/cAc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591042	67591042	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	53	244	0	ENST00000274335.5:c.1636del	p.Glu546LysfsTer4	p.E546Kfs*4	ENST00000274335		545	ttG/tt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591086	67591097	+	inframe_deletion	In_Frame_Del	DEL	ACAAACGTATGA	ACAAACGTATGA	-			P-0028439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	103	245	0	ENST00000274335.5:c.1682_1693del	p.Lys561_Asn564del	p.K561_N564del	ENST00000274335		560	gACAAACGTATGAac/gac																																																																														
NBN	0	MSKCC	GRCh37	8	90965664	90965664	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	52	217	0	ENST00000265433.3:c.1653G>C	p.Arg551Ser	p.R551S	ENST00000265433	NM_002485.4	551	agG/agC																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057715	27057716	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	344	583	0	ENST00000324856.7:c.1423_1424del	p.Pro476SerfsTer146	p.P476Sfs*146	ENST00000324856	NM_006015.4	475	AGt/t																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	96	314	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	90	312	0				ENST00000310581	NM_198253.2																																																																																
RAD50	0	MSKCC	GRCh37	5	131915699	131915699	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	42	356	0	ENST00000265335.6:c.697C>T	p.Gln233Ter	p.Q233*	ENST00000265335		233	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	85	348	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578373	7578381	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TCGCTATCT	TCGCTATCT	-			P-0028441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	164	401	0	ENST00000269305.4:c.549_557del	p.Asp184_Asp186del	p.D184_D186del	ENST00000269305	NM_001126112.2	183	tcAGATAGCGAt/tct																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877427	40877427	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	170	347	0	ENST00000373198.4:c.2269G>T	p.Glu757Ter	p.E757*	ENST00000373198	NM_133170.3	757	Gag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112175440	112175441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	116	245	0	ENST00000257430.4:c.4152dup	p.Ser1385Ter	p.S1385*	ENST00000257430	NM_000038.5	1383	-/T																																																																														
KDM5A	0	MSKCC	GRCh37	12	406288	406288	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	38	397	0	ENST00000399788.2:c.4153G>C	p.Glu1385Gln	p.E1385Q	ENST00000399788	NM_001042603.1	1385	Gag/Cag																																																																														
RARA	0	MSKCC	GRCh37	17	38511673	38511673	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	35	356	0	ENST00000254066.5:c.1171G>A	p.Gly391Arg	p.G391R	ENST00000254066	NM_000964.3	391	Ggg/Agg																																																																														
TP53	0	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0028449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	294	710	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675047	40675047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	111	570	0	ENST00000249776.8:c.11C>T	p.Pro4Leu	p.P4L	ENST00000249776	NM_033286.3	4	cCc/cTc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99459227	99459227	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	148	642	1	ENST00000268035.6:c.1863del	p.Asn622ThrfsTer6	p.N622Tfs*6	ENST00000268035	NM_000875.3	621	tcG/tc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096455	178096455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	63	284	0	ENST00000397062.3:c.876G>C	p.Glu292Asp	p.E292D	ENST00000397062	NM_006164.4	292	gaG/gaC																																																																														
WHSC1	0	MSKCC	GRCh37	4	1977030	1977030	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	112	583	0	ENST00000382891.5:c.3524T>A	p.Leu1175Gln	p.L1175Q	ENST00000382891	NM_133335.3	1175	cTg/cAg																																																																														
RAD21	0	MSKCC	GRCh37	8	117862859	117862859	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	56	364	0	ENST00000297338.2:c.1618G>C	p.Glu540Gln	p.E540Q	ENST00000297338	NM_006265.2	540	Gag/Cag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061250	38061250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	110	746	1	ENST00000250448.2:c.739C>T	p.His247Tyr	p.H247Y	ENST00000250448	NM_004496.3	247	Cac/Tac																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391011	89391011	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	15	621	0	ENST00000336596.2:c.1077C>G	p.Phe359Leu	p.F359L	ENST00000336596	NM_005233.5	359	ttC/ttG																																																																														
BCL6	0	MSKCC	GRCh37	3	187447037	187447037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	114	676	0	ENST00000232014.4:c.1156C>G	p.Leu386Val	p.L386V	ENST00000232014	NM_001130845.1	386	Ctc/Gtc																																																																														
SPOP	0	MSKCC	GRCh37	17	47699360	47699360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	84	679	0	ENST00000347630.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000347630	NM_001007230.1	50	Gaa/Aaa																																																																														
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	123	972	1	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
CDH1	0	MSKCC	GRCh37	16	68846080	68846080	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	143	907	4	ENST00000261769.5:c.1051C>T	p.Gln351Ter	p.Q351*	ENST00000261769	NM_004360.3	351	Caa/Taa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061517	38061517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	68	431	0	ENST00000250448.2:c.472G>A	p.Asp158Asn	p.D158N	ENST00000250448	NM_004496.3	158	Gac/Aac																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175942	176175942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	32	122	0	ENST00000367669.3:c.173C>T	p.Ser58Leu	p.S58L	ENST00000367669	NM_022457.5	58	tCg/tTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71949356	71949356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	120	881	0	ENST00000298229.2:c.3736C>T	p.His1246Tyr	p.H1246Y	ENST00000298229	NM_001567.3	1246	Cac/Tac																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910756	29910756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	92	1097	0	ENST00000376809.5:c.296G>C	p.Arg99Pro	p.R99P	ENST00000376809	NM_002116.7	99	cGa/cCa																																																																														
SYK	0	MSKCC	GRCh37	9	93637126	93637126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	43	751	2	ENST00000375746.1:c.1176G>A	p.Met392Ile	p.M392I	ENST00000375746	NM_001174167.1	392	atG/atA																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859702	151859702	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	41	350	0	ENST00000262189.6:c.10960C>T	p.Gln3654Ter	p.Q3654*	ENST00000262189	NM_170606.2	3654	Caa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023307	27023307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	26	234	0	ENST00000324856.7:c.413C>T	p.Ser138Leu	p.S138L	ENST00000324856	NM_006015.4	138	tCa/tTa																																																																														
NUF2	0	MSKCC	GRCh37	1	163295859	163295859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	54	654	0	ENST00000271452.3:c.18C>G	p.Phe6Leu	p.F6L	ENST00000271452	NM_145697.2	6	ttC/ttG																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88649908	88649908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	68	604	0	ENST00000372037.3:c.157G>C	p.Glu53Gln	p.E53Q	ENST00000372037	NM_004329.2	53	Gag/Cag																																																																														
PTEN	0	MSKCC	GRCh37	10	89711923	89711945	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTTAAAGAATCATCTGGATTA	CTGTTAAAGAATCATCTGGATTA	-			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	27	755	0	ENST00000371953.3:c.541_563del	p.Leu181Ter	p.L181*	ENST00000371953	NM_000314.4	181	CTGTTAAAGAATCATCTGGATTAt/t																																																																														
INPPL1	0	MSKCC	GRCh37	11	71936176	71936176	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	44	579	0	ENST00000298229.2:c.148G>T	p.Glu50Ter	p.E50*	ENST00000298229	NM_001567.3	50	Gag/Tag																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942656	71942656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	122	844	0	ENST00000298229.2:c.1612C>G	p.Leu538Val	p.L538V	ENST00000298229	NM_001567.3	538	Ctg/Gtg																																																																														
SESN3	0	MSKCC	GRCh37	11	94908775	94908775	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	72	763	1	ENST00000536441.1:c.1279C>T	p.Gln427Ter	p.Q427*	ENST00000536441	NM_144665.3	427	Caa/Taa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807374	3807374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	67	560	0	ENST00000262367.5:c.3613G>C	p.Glu1205Gln	p.E1205Q	ENST00000262367	NM_004380.2	1205	Gag/Cag																																																																														
CTCF	0	MSKCC	GRCh37	16	67671611	67671611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	57	615	0	ENST00000264010.4:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000264010	NM_006565.3	674	Gaa/Aaa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029406	16029406	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	45	676	0	ENST00000268712.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000268712	NM_006311.3	542	Gaa/Caa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029484	16029484	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	48	622	1	ENST00000268712.3:c.1546G>T	p.Glu516Ter	p.E516*	ENST00000268712	NM_006311.3	516	Gaa/Taa																																																																														
CIC	0	MSKCC	GRCh37	19	42793219	42793219	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	70	1175	0	ENST00000575354.2:c.1111C>T	p.Gln371Ter	p.Q371*	ENST00000575354	NM_015125.3	371	Cag/Tag																																																																														
SOS1	0	MSKCC	GRCh37	2	39278424	39278424	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	81	773	0	ENST00000402219.2:c.725T>A	p.Val242Glu	p.V242E	ENST00000402219	NM_005633.3	242	gTa/gAa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266024	41266024	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	14	275	0	ENST00000349496.5:c.21G>C	p.Leu7Phe	p.L7F	ENST00000349496	NM_001904.3	7	ttG/ttC																																																																														
FOXP1	0	MSKCC	GRCh37	3	71101690	71101690	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	22	388	0	ENST00000318789.4:c.508G>C	p.Glu170Gln	p.E170Q	ENST00000318789	NM_032682.5	170	Gag/Cag																																																																														
FOXP1	0	MSKCC	GRCh37	3	71101708	71101708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	27	412	0	ENST00000318789.4:c.490G>A	p.Ala164Thr	p.A164T	ENST00000318789	NM_032682.5	164	Gct/Act																																																																														
FOXP1	0	MSKCC	GRCh37	3	71101729	71101729	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	31	408	0	ENST00000318789.4:c.469C>T	p.Gln157Ter	p.Q157*	ENST00000318789	NM_032682.5	157	Caa/Taa																																																																														
INPP4B	0	MSKCC	GRCh37	4	143033788	143033788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	44	632	1	ENST00000262992.4:c.2183C>T	p.Ser728Leu	p.S728L	ENST00000262992	NM_001101669.1	728	tCa/tTa																																																																														
INPP4B	0	MSKCC	GRCh37	4	143094931	143094931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	66	644	0	ENST00000262992.4:c.1213G>A	p.Glu405Lys	p.E405K	ENST00000262992	NM_001101669.1	405	Gaa/Aaa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160564	56160564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	50	359	0	ENST00000399503.3:c.838C>T	p.Gln280Ter	p.Q280*	ENST00000399503	NM_005921.1	280	Cag/Tag																																																																														
NSD1	0	MSKCC	GRCh37	5	176720958	176720958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	93	573	0	ENST00000439151.2:c.6589G>A	p.Asp2197Asn	p.D2197N	ENST00000439151	NM_022455.4	2197	Gat/Aat																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032138	26032138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	56	395	0	ENST00000244661.2:c.151G>C	p.Glu51Gln	p.E51Q	ENST00000244661	NM_003537.3	51	Gag/Cag																																																																														
TAP1	0	MSKCC	GRCh37	6	32813519	32813519	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	97	598	0	ENST00000354258.4:c.2264C>A	p.Ser755Ter	p.S755*	ENST00000354258	NM_000593.5	755	tCa/tAa																																																																														
ETV1	0	MSKCC	GRCh37	7	13946057	13946057	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	24	420	0	ENST00000405192.2:c.1039G>C	p.Glu347Gln	p.E347Q	ENST00000405192	NM_001163147.1	347	Gag/Cag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38153467	38153467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	33	566	0	ENST00000317025.8:c.2762G>A	p.Gly921Glu	p.G921E	ENST00000317025	NM_023034.1	921	gGa/gAa																																																																														
SOX17	0	MSKCC	GRCh37	8	55372500	55372500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1259	172	1424	3	ENST00000297316.4:c.1190C>T	p.Ser397Leu	p.S397L	ENST00000297316	NM_022454.3	397	tCg/tTg																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128434737	128434737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	97	846	0	ENST00000265960.3:c.117G>C	p.Glu39Asp	p.E39D	ENST00000265960	NM_001006617.1	39	gaG/gaC																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0028464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	52	329	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0028464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	183	429	0	ENST00000269305.4:c.792_794delACT	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	285	364	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PMS2	0	MSKCC	GRCh37	7	6045573	6045573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148270248		P-0028464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	96	300	0	ENST00000265849.7:c.113C>T	p.Ala38Val	p.A38V	ENST00000265849	NM_000535.5	38	gCg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0028464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	90	364	2				ENST00000310581	NM_198253.2																																																																																
ERBB3	0	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	127	440	0	ENST00000267101.3:c.1166C>A	p.Thr389Lys	p.T389K	ENST00000267101	NM_001982.3	389	aCa/aAa																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	44	382	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
TP53	0	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	149	616	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																																																														
ATM	0	MSKCC	GRCh37	11	108128328	108128328	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	42	217	0	ENST00000278616.4:c.2371A>T	p.Thr791Ser	p.T791S	ENST00000278616	NM_000051.3	791	Acc/Tcc																																																																														
ETV6	0	MSKCC	GRCh37	12	12037374	12037394	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTAGACTGTAGACTGCTTTG	TGTAGACTGTAGACTGCTTTG	-			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	62	670	0	ENST00000396373.4:c.1010-5_1025del		p.X337_splice	ENST00000396373	NM_001987.4	337																																																																															
SMAD3	0	MSKCC	GRCh37	15	67473592	67473593	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	32	399	1	ENST00000327367.4:c.673dup	p.Thr225AsnfsTer86	p.T225Nfs*86	ENST00000327367	NM_005902.3	224	-/A																																																																														
BRD4	0	MSKCC	GRCh37	19	15375255	15375255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	28	507	1	ENST00000263377.2:c.1172G>T	p.Cys391Phe	p.C391F	ENST00000263377	NM_058243.2	391	tGt/tTt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095986	178095986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	20	386	0	ENST00000397062.3:c.1345C>G	p.Arg449Gly	p.R449G	ENST00000397062	NM_006164.4	449	Cgc/Ggc																																																																														
PAK7	0	MSKCC	GRCh37	20	9624885	9624885	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	45	362	0	ENST00000353224.5:c.92del	p.Lys31SerfsTer13	p.K31Sfs*13	ENST00000353224	NM_177990.2	31	aAg/ag																																																																														
ATRX	0	MSKCC	GRCh37	X	76776892	76776892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	40	451	0	ENST00000373344.5:c.7060A>G	p.Ile2354Val	p.I2354V	ENST00000373344	NM_000489.3	2354	Att/Gtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	58	332	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	130	585	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	91	485	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	91	485	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	91	485	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
UPF1	0	MSKCC	GRCh37	19	18972860	18972860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	42	460	0	ENST00000262803.5:c.2499G>C	p.Glu833Asp	p.E833D	ENST00000262803	NM_002911.3	833	gaG/gaC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	58	470	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	94	301	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	139	395	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	140	425	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	136	379	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	130	332	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	183	456	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	36	106	1	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	203	526	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402690	139402690	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	81	435	0	ENST00000277541.6:c.3319C>T	p.Arg1107Ter	p.R1107*	ENST00000277541	NM_017617.3	1107	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	147	399	0	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																														
PIM1	0	MSKCC	GRCh37	6	37140829	37140829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	128	386	0	ENST00000373509.5:c.665C>T	p.Ser222Leu	p.S222L	ENST00000373509	NM_002648.3	222	tCg/tTg																																																																														
EGFL7	0	MSKCC	GRCh37	9	139566418	139566418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	154	411	1	ENST00000308874.7:c.677C>T	p.Ser226Leu	p.S226L	ENST00000308874		226	tCg/tTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	115	228	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	187	591	3	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																														
RAD50	0	MSKCC	GRCh37	5	131895051	131895051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	65	247	0	ENST00000265335.6:c.205G>A	p.Asp69Asn	p.D69N	ENST00000265335		69	Gat/Aat																																																																														
ARID2	0	MSKCC	GRCh37	12	46123837	46123837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	77	204	0	ENST00000334344.6:c.109delA	p.Ile37SerfsTer21	p.I37Sfs*21	ENST00000334344	NM_152641.2	35	Aaa/aa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120457933	120457933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	93	268	0	ENST00000256646.2:c.7412C>T	p.Ala2471Val	p.A2471V	ENST00000256646	NM_024408.3	2471	gCg/gTg																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67198852	67198852	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185889430		P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	96	264	0	ENST00000312629.5:c.323G>A	p.Arg108His	p.R108H	ENST00000312629	NM_003952.2	108	cGc/cAc																																																																														
IDH1	3417	MSKCC	GRCh37	2	209116262	209116263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs754375602		P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	56	156	0	ENST00000345146.2:c.13dup	p.Ile5AsnfsTer13	p.I5Nfs*13	ENST00000345146	NM_005896.2	5	atc/aAtc																																																																														
MDC1	0	MSKCC	GRCh37	6	30682856	30682856	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113702536		P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	164	352	0	ENST00000376406.3:c.97C>T	p.Arg33Trp	p.R33W	ENST00000376406	NM_014641.2	33	Cgg/Tgg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157510806	157510806	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	136	352	2	ENST00000346085.5:c.3586del	p.Gln1196SerfsTer15	p.Q1196Sfs*15	ENST00000346085	NM_020732.3	1194	aCc/ac																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302277	15302277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	78	503	0	ENST00000263388.2:c.994C>T	p.Arg332Cys	p.R332C	ENST00000263388	NM_000435.2	332	Cgc/Tgc																																																																														
MEN1	0	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	45	397	1	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	123	377	0	ENST00000263967.3:c.1625A>T	p.Glu542Val	p.E542V	ENST00000263967	NM_006218.2	542	gAa/gTa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212230	5212230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367918810		P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	180	373	1	ENST00000357368.4:c.4801G>A	p.Val1601Ile	p.V1601I	ENST00000357368	NM_002850.3	1601	Gtc/Atc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	124	430	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
CARD11	0	MSKCC	GRCh37	7	2976741	2976741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	190	396	1	ENST00000396946.4:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000396946	NM_032415.4	424	cGg/cAg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71943789	71943789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	179	457	1	ENST00000298229.2:c.1832G>A	p.Arg611His	p.R611H	ENST00000298229	NM_001567.3	611	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	174	564	2	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31431691	31431691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	106	270	0	ENST00000344624.3:c.3137C>T	p.Ala1046Val	p.A1046V	ENST00000344624		1046	gCg/gTg																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500476	99500476	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	68	438	2	ENST00000268035.6:c.3913del	p.Leu1305TrpfsTer45	p.L1305Wfs*45	ENST00000268035	NM_000875.3	1303	gtC/gt																																																																														
POLE	0	MSKCC	GRCh37	12	133245474	133245474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	153	351	0	ENST00000320574.5:c.1846C>T	p.Arg616Cys	p.R616C	ENST00000320574	NM_006231.2	616	Cgc/Tgc																																																																														
DICER1	0	MSKCC	GRCh37	14	95574405	95574405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	67	177	0	ENST00000343455.3:c.2462G>A	p.Arg821His	p.R821H	ENST00000343455	NM_177438.2	821	cGc/cAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139417616	139417616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	244	502	0	ENST00000277541.6:c.428C>T	p.Pro143Leu	p.P143L	ENST00000277541	NM_017617.3	143	cCg/cTg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66230818	66230818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	94	245	0	ENST00000273854.3:c.2153G>A	p.Arg718His	p.R718H	ENST00000273854	NM_004439.5	718	cGc/cAc																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225510	26225510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	90	264	0	ENST00000360408.1:c.128G>A	p.Arg43His	p.R43H	ENST00000360408	NM_003532.2	43	cGc/cAc																																																																														
DICER1	0	MSKCC	GRCh37	14	95578563	95578563	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	100	259	0	ENST00000343455.3:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000343455	NM_177438.2	688	Cga/Tga																																																																														
CBL	0	MSKCC	GRCh37	11	119144604	119144604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	90	235	0	ENST00000264033.4:c.617G>A	p.Arg206Gln	p.R206Q	ENST00000264033	NM_005188.3	206	cGa/cAa																																																																														
MTOR	0	MSKCC	GRCh37	1	11189882	11189883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	126	268	0	ENST00000361445.4:c.5626dup	p.Thr1876AsnfsTer37	p.T1876Nfs*37	ENST00000361445	NM_004958.3	1876	acc/aAcc																																																																														
MTOR	0	MSKCC	GRCh37	1	11205036	11205036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	145	441	0	ENST00000361445.4:c.4753C>T	p.Arg1585Trp	p.R1585W	ENST00000361445	NM_004958.3	1585	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27059206	27059207	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	105	336	0	ENST00000324856.7:c.1848dup	p.Ser617LeufsTer6	p.S617Lfs*6	ENST00000324856	NM_006015.4	615	gcc/gCcc																																																																														
WT1	0	MSKCC	GRCh37	11	32456390	32456390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	43	481	0	ENST00000332351.3:c.502T>C	p.Phe168Leu	p.F168L	ENST00000332351	NM_024426.4	168	Ttc/Ctc																																																																														
MEN1	0	MSKCC	GRCh37	11	64577434	64577434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	164	404	0	ENST00000337652.1:c.148G>A	p.Val50Ile	p.V50I	ENST00000337652	NM_130803.2	50	Gtc/Atc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942071	71942071	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	196	511	0	ENST00000298229.2:c.1335G>A	p.Trp445Ter	p.W445*	ENST00000298229	NM_001567.3	445	tgG/tgA																																																																														
ARID2	0	MSKCC	GRCh37	12	46230680	46230680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	30	299	1	ENST00000334344.6:c.929G>A	p.Arg310His	p.R310H	ENST00000334344	NM_152641.2	310	cGt/cAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435998	49435998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	171	403	1	ENST00000301067.7:c.5983G>A	p.Gly1995Arg	p.G1995R	ENST00000301067	NM_003482.3	1995	Gga/Aga																																																																														
AXIN1	0	MSKCC	GRCh37	16	341278	341278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	64	456	0	ENST00000262320.3:c.2206C>T	p.Arg736Trp	p.R736W	ENST00000262320	NM_003502.3	736	Cgg/Tgg																																																																														
SLX4	0	MSKCC	GRCh37	16	3645617	3645617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	208	444	0	ENST00000294008.3:c.2002G>A	p.Gly668Ser	p.G668S	ENST00000294008	NM_032444.2	668	Ggc/Agc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9892212	9892212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	143	377	0	ENST00000330684.3:c.2278G>T	p.Gly760Cys	p.G760C	ENST00000330684	NM_001134407.1	760	Ggt/Tgt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944151	81944151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	115	402	1	ENST00000359376.3:c.1760G>A	p.Arg587Gln	p.R587Q	ENST00000359376	NM_002661.3	587	cGg/cAg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351532	89351532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	181	467	0	ENST00000301030.4:c.1418G>A	p.Ser473Asn	p.S473N	ENST00000301030	NM_001256183.1	473	aGc/aAc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16055260	16055260	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	95	281	0	ENST00000268712.3:c.842C>T	p.Thr281Ile	p.T281I	ENST00000268712	NM_006311.3	281	aCa/aTa																																																																														
STAT5A	0	MSKCC	GRCh37	17	40462643	40462643	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	34	353	0	ENST00000345506.4:c.2345del	p.Pro782LeufsTer34	p.P782Lfs*34	ENST00000345506	NM_003152.3	781	Ccc/cc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2217906	2217906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	205	437	0	ENST00000398665.3:c.2680G>A	p.Ala894Thr	p.A894T	ENST00000398665	NM_032482.2	894	Gcc/Acc																																																																														
INSR	0	MSKCC	GRCh37	19	7122732	7122732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	193	481	1	ENST00000302850.5:c.3422C>T	p.Ala1141Val	p.A1141V	ENST00000302850	NM_000208.2	1141	gCa/gTa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097224	11097224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	176	434	1	ENST00000344626.4:c.715G>A	p.Gly239Ser	p.G239S	ENST00000344626	NM_003072.3	239	Ggc/Agc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214390	36214390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	166	437	0	ENST00000222270.7:c.3044G>A	p.Arg1015Gln	p.R1015Q	ENST00000222270	NM_014727.1	1015	cGa/cAa																																																																														
MSH2	0	MSKCC	GRCh37	2	47702319	47702319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	142	302	0	ENST00000233146.2:c.1915C>T	p.His639Tyr	p.H639Y	ENST00000233146	NM_000251.2	639	Cat/Tat																																																																														
MSH2	0	MSKCC	GRCh37	2	47703543	47703552	+	frameshift_variant	Frame_Shift_Del	DEL	AACTGGGGTG	AACTGGGGTG	-			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	204	372	0	ENST00000233146.2:c.2044_2053del	p.Thr682Ter	p.T682*	ENST00000233146	NM_000251.2	681	caAACTGGGGTG/ca																																																																														
ERCC3	0	MSKCC	GRCh37	2	128015296	128015296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	102	303	0	ENST00000285398.2:c.2225G>A	p.Arg742Gln	p.R742Q	ENST00000285398	NM_000122.1	742	cGg/cAg																																																																														
CASP8	0	MSKCC	GRCh37	2	202131200	202131200	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	165	194	0	ENST00000358485.4:c.171del	p.Phe57LeufsTer28	p.F57Lfs*28	ENST00000358485	NM_001080125.1	56	ccT/cc																																																																														
CUL3	0	MSKCC	GRCh37	2	225368442	225368444	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	37	296	0	ENST00000264414.4:c.1302_1304del	p.Gln434del	p.Q434del	ENST00000264414	NM_003590.4	434	caACAc/cac																																																																														
PAK7	0	MSKCC	GRCh37	20	9538334	9538334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	122	324	0	ENST00000353224.5:c.1664C>T	p.Ala555Val	p.A555V	ENST00000353224	NM_177990.2	555	gCt/gTt																																																																														
NCOA3	0	MSKCC	GRCh37	20	46282157	46282157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	85	209	0	ENST00000371998.3:c.4271G>A	p.Cys1424Tyr	p.C1424Y	ENST00000371998		1424	tGc/tAc																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45655337	45655337	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	248	580	0	ENST00000407780.3:c.515T>A	p.Ile172Asn	p.I172N	ENST00000407780	NM_001283052.1	172	aTc/aAc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643861	52643861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	149	311	1	ENST00000394830.3:c.2035C>T	p.Arg679Cys	p.R679C	ENST00000394830	NM_018313.4	679	Cgc/Tgc																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114283	73114285	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	58	154	0	ENST00000356692.5:c.926_928del	p.Glu310del	p.E310del	ENST00000356692		307	GAA/-																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138400882	138400882	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	129	352	0	ENST00000289153.2:c.2431C>T	p.Arg811Ter	p.R811*	ENST00000289153	NM_006219.2	811	Cga/Tga																																																																														
ATR	0	MSKCC	GRCh37	3	142242935	142242935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	152	338	0	ENST00000350721.4:c.4052G>A	p.Arg1351Gln	p.R1351Q	ENST00000350721	NM_001184.3	1351	cGg/cAg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957425	1957425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	89	259	1	ENST00000382891.5:c.2524A>G	p.Ser842Gly	p.S842G	ENST00000382891	NM_133335.3	842	Agc/Ggc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66509128	66509128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	89	321	0	ENST00000273854.3:c.199C>T	p.Arg67Cys	p.R67C	ENST00000273854	NM_004439.5	67	Cgc/Tgc																																																																														
TET2	0	MSKCC	GRCh37	4	106197299	106197299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	41	245	0	ENST00000380013.4:c.5632C>T	p.Arg1878Cys	p.R1878C	ENST00000380013	NM_001127208.2	1878	Cgt/Tgt																																																																														
TAP1	0	MSKCC	GRCh37	6	32813523	32813523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	29	304	0	ENST00000354258.4:c.2260C>T	p.Arg754Cys	p.R754C	ENST00000354258	NM_000593.5	754	Cgc/Tgc																																																																														
BRAF	0	MSKCC	GRCh37	7	140482934	140482934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	54	457	1	ENST00000288602.6:c.1201A>G	p.Thr401Ala	p.T401A	ENST00000288602	NM_004333.4	401	Acc/Gcc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412719	139412720	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	80	444	0	ENST00000277541.6:c.1124dup	p.Cys376MetfsTer7	p.C376Mfs*7	ENST00000277541	NM_017617.3	375	gca/gcCa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929281	44929281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	197	475	0	ENST00000377967.4:c.2381C>T	p.Thr794Ile	p.T794I	ENST00000377967	NM_021140.2	794	aCt/aTt																																																																														
STAG2	0	MSKCC	GRCh37	X	123200095	123200095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	28	300	0	ENST00000218089.9:c.2167G>A	p.Gly723Arg	p.G723R	ENST00000218089	NM_001042749.1	723	Gga/Aga																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074381	8074381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	120	291	0	ENST00000377482.5:c.278C>A	p.Pro93His	p.P93H	ENST00000377482	NM_018948.3	93	cCc/cAc																																																																														
STK40	0	MSKCC	GRCh37	1	36807480	36807480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	126	447	0	ENST00000373129.3:c.1184C>T	p.Ala395Val	p.A395V	ENST00000373129	NM_032017.1	395	gCc/gTc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36933161	36933161	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	146	458	0	ENST00000361632.4:c.1956del	p.Asn653ThrfsTer149	p.N653Tfs*149	ENST00000361632		652	ccC/cc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46725744	46725744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	115	320	0	ENST00000371975.4:c.380G>A	p.Ser127Asn	p.S127N	ENST00000371975	NM_003579.3	127	aGc/aAc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46726435	46726435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142433634		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	97	263	0	ENST00000371975.4:c.514C>T	p.Arg172Cys	p.R172C	ENST00000371975	NM_003579.3	172	Cgc/Tgc																																																																														
IL10	0	MSKCC	GRCh37	1	206942061	206942061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	59	239	0	ENST00000423557.1:c.457G>T	p.Gly153Cys	p.G153C	ENST00000423557	NM_000572.2	153	Ggc/Tgc																																																																														
PARP1	0	MSKCC	GRCh37	1	226555308	226555308	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	85	268	0	ENST00000366794.5:c.2279C>T	p.Ala760Val	p.A760V	ENST00000366794	NM_001618.3	760	gCc/gTc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	59	224	2	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114724349	114724349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	112	308	2	ENST00000543371.1:c.416C>T	p.Ala139Val	p.A139V	ENST00000543371	NM_001198531.1	139	gCg/gTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	239	363	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
WT1	0	MSKCC	GRCh37	11	32456509	32456509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	46	149	0	ENST00000332351.3:c.383C>T	p.Pro128Leu	p.P128L	ENST00000332351	NM_024426.4	128	cCg/cTg																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67201725	67201725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	133	400	2	ENST00000312629.5:c.1031del	p.Pro344LeufsTer12	p.P344Lfs*12	ENST00000312629	NM_003952.2	342	gaC/ga																																																																														
INPPL1	0	MSKCC	GRCh37	11	71943359	71943359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	118	335	0	ENST00000298229.2:c.1691C>T	p.Ser564Leu	p.S564L	ENST00000298229	NM_001567.3	564	tCg/tTg																																																																														
PAK1	0	MSKCC	GRCh37	11	77066866	77066866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	69	197	0	ENST00000356341.3:c.619G>A	p.Glu207Lys	p.E207K	ENST00000356341	NM_002576.4	207	Gaa/Aaa																																																																														
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	63	186	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	128	311	0	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	102	378	5	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944698	31944699	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	12	87	0	ENST00000340398.3:c.402_403del	p.Arg134SerfsTer12	p.R134Sfs*12	ENST00000340398	NM_001013699.2	134	agAGct/agct																																																																														
H3F3C	0	MSKCC	GRCh37	12	31945024	31945024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	165	563	0	ENST00000340398.3:c.77C>T	p.Ala26Val	p.A26V	ENST00000340398	NM_001013699.2	26	gCc/gTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46254666	46254666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	100	328	0	ENST00000334344.6:c.4856G>A	p.Ser1619Asn	p.S1619N	ENST00000334344	NM_152641.2	1619	aGt/aAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425611	49425611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	196	539	0	ENST00000301067.7:c.12877C>T	p.Pro4293Ser	p.P4293S	ENST00000301067	NM_003482.3	4293	Cca/Tca																																																																														
MDM2	0	MSKCC	GRCh37	12	69218164	69218164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	106	282	0	ENST00000462284.1:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000462284	NM_002392.5	127	tCt/tAt																																																																														
TBX3	0	MSKCC	GRCh37	12	115117423	115117423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	71	298	0	ENST00000257566.3:c.751C>T	p.Arg251Trp	p.R251W	ENST00000257566	NM_016569.3	251	Cgg/Tgg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121416861	121416861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	247	618	0	ENST00000257555.6:c.290C>A	p.Ala97Glu	p.A97E	ENST00000257555		97	gCg/gAg																																																																														
POLE	0	MSKCC	GRCh37	12	133210965	133210965	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	108	283	0	ENST00000320574.5:c.5812-1G>A		p.X1938_splice	ENST00000320574	NM_006231.2	1938																																																																															
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	130	378	1	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871856	35871856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	114	304	0	ENST00000216797.5:c.650G>A	p.Gly217Asp	p.G217D	ENST00000216797	NM_020529.2	217	gGc/gAc																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873766	35873766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	120	339	0	ENST00000216797.5:c.85C>A	p.Arg29Ser	p.R29S	ENST00000216797	NM_020529.2	29	Cgc/Agc																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986774	36986774	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	41	101	0	ENST00000354822.5:c.915del	p.Ala306ArgfsTer75	p.A306Rfs*75	ENST00000354822	NM_001079668.2	305	ccC/cc																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986925	36986925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	166	403	0	ENST00000354822.5:c.764C>T	p.Ala255Val	p.A255V	ENST00000354822	NM_001079668.2	255	gCg/gTg																																																																														
AKT1	0	MSKCC	GRCh37	14	105241310	105241310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	164	527	0	ENST00000349310.3:c.598C>T	p.Arg200Cys	p.R200C	ENST00000349310	NM_001014432.1	200	Cgc/Tgc																																																																														
MGA	0	MSKCC	GRCh37	15	42052626	42052626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	122	358	0	ENST00000219905.7:c.7297C>T	p.Arg2433Trp	p.R2433W	ENST00000219905	NM_001164273.1	2433	Cgg/Tgg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43707818	43707818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	169	506	1	ENST00000382044.4:c.5063G>A	p.Gly1688Asp	p.G1688D	ENST00000382044	NM_001141980.1	1688	gGt/gAt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748384	43748384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	75	570	0	ENST00000382044.4:c.2422G>A	p.Asp808Asn	p.D808N	ENST00000382044	NM_001141980.1	808	Gac/Aac																																																																														
AXIN1	0	MSKCC	GRCh37	16	396507	396507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	171	614	2	ENST00000262320.3:c.519G>A	p.Met173Ile	p.M173I	ENST00000262320	NM_003502.3	173	atG/atA																																																																														
NTHL1	0	MSKCC	GRCh37	16	2096314	2096314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	162	572	2	ENST00000219066.1:c.193C>T	p.Arg65Cys	p.R65C	ENST00000219066	NM_002528.5	65	Cgt/Tgt																																																																														
CTCF	0	MSKCC	GRCh37	16	67660509	67660509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	122	329	0	ENST00000264010.4:c.1409G>A	p.Arg470His	p.R470H	ENST00000264010	NM_006565.3	470	cGt/cAt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822539	72822540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	94	373	0	ENST00000268489.5:c.9635dup	p.Pro3213AlafsTer26	p.P3213Afs*26	ENST00000268489	NM_006885.3	3212	ccg/ccCg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991976	72991976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	137	416	0	ENST00000268489.5:c.2069T>C	p.Met690Thr	p.M690T	ENST00000268489	NM_006885.3	690	aTg/aCg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350048	89350048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	160	488	1	ENST00000301030.4:c.2902C>T	p.Pro968Ser	p.P968S	ENST00000301030	NM_001256183.1	968	Ccc/Tcc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350611	89350613	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	197	684	0	ENST00000301030.4:c.2337_2339del	p.Lys779del	p.K779del	ENST00000301030	NM_001256183.1	779	aaGAAt/aat																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89352540	89352540	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	129	391	0	ENST00000301030.4:c.799G>T	p.Gly267Cys	p.G267C	ENST00000301030	NM_001256183.1	267	Ggc/Tgc																																																																														
GPS2	0	MSKCC	GRCh37	17	7216379	7216380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	111	459	2	ENST00000380728.2:c.868dupC	p.Gln290ProfsTer?	p.Q290Pfs*?	ENST00000380728		290	cag/cCag																																																																														
GPS2	0	MSKCC	GRCh37	17	7217008	7217008	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	114	351	0	ENST00000380728.2:c.513del	p.Phe171LeufsTer174	p.F171Lfs*174	ENST00000380728		171	ttT/tt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7976476	7976476	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	140	369	0	ENST00000319144.4:c.1916del	p.Pro639LeufsTer24	p.P639Lfs*24	ENST00000319144	NM_001139.2	639	cCt/ct																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	56	201	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																																																														
NF1	0	MSKCC	GRCh37	17	29508503	29508503	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	88	330	0	ENST00000358273.4:c.653del	p.Lys218ArgfsTer7	p.K218Rfs*7	ENST00000358273	NM_001042492.2	217	gAa/ga																																																																														
NF1	0	MSKCC	GRCh37	17	29665778	29665778	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	73	302	0	ENST00000358273.4:c.6876A>C	p.Glu2292Asp	p.E2292D	ENST00000358273	NM_001042492.2	2292	gaA/gaC																																																																														
ERBB2	0	MSKCC	GRCh37	17	37884070	37884070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	188	549	0	ENST00000269571.5:c.3541G>A	p.Val1181Ile	p.V1181I	ENST00000269571		1181	Gtc/Atc																																																																														
STAT5A	0	MSKCC	GRCh37	17	40447790	40447790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	127	391	0	ENST00000345506.4:c.529C>A	p.Gln177Lys	p.Q177K	ENST00000345506	NM_003152.3	177	Cag/Aag																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	132	470	1	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	173	506	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78857747	78857747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	118	506	0	ENST00000306801.3:c.1817G>T	p.Ser606Ile	p.S606I	ENST00000306801	NM_020761.2	606	aGc/aTc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78919466	78919466	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	146	363	0	ENST00000306801.3:c.3026-1G>T		p.X1009_splice	ENST00000306801	NM_020761.2	1009																																																																															
TCF3	0	MSKCC	GRCh37	19	1650225	1650225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	158	491	1	ENST00000344749.5:c.23C>T	p.Ala8Val	p.A8V	ENST00000344749	NM_001136139.2	8	gCg/gTg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226382	2226382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	202	655	1	ENST00000398665.3:c.3862C>A	p.Leu1288Met	p.L1288M	ENST00000398665	NM_032482.2	1288	Ctg/Atg																																																																														
GNA11	0	MSKCC	GRCh37	19	3114988	3114988	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	156	514	0	ENST00000078429.4:c.523A>G	p.Thr175Ala	p.T175A	ENST00000078429	NM_002067.2	175	Acc/Gcc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244068	5244068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	157	531	1	ENST00000357368.4:c.1414G>A	p.Val472Met	p.V472M	ENST00000357368	NM_002850.3	472	Gtg/Atg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10270594	10270594	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	133	452	0	ENST00000340748.4:c.1046A>G	p.His349Arg	p.H349R	ENST00000340748		349	cAc/cGc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098363	11098363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	186	511	0	ENST00000344626.4:c.885del	p.Thr296ArgfsTer7	p.T296Rfs*7	ENST00000344626	NM_003072.3	294	gCc/gc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11101877	11101877	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	168	599	1	ENST00000344626.4:c.1297G>C	p.Ala433Pro	p.A433P	ENST00000344626	NM_003072.3	433	Gcc/Ccc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11135006	11135006	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	92	434	0	ENST00000344626.4:c.2974-1G>T		p.X992_splice	ENST00000344626	NM_003072.3	992																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11145645	11145645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	196	538	1	ENST00000344626.4:c.4007G>A	p.Arg1336His	p.R1336H	ENST00000344626	NM_003072.3	1336	cGc/cAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152049	11152049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	163	405	0	ENST00000344626.4:c.4237C>T	p.Arg1413Cys	p.R1413C	ENST00000344626	NM_003072.3	1413	Cgc/Tgc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15285206	15285206	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	193	538	0	ENST00000263388.2:c.4409T>G	p.Val1470Gly	p.V1470G	ENST00000263388	NM_000435.2	1470	gTg/gGg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15297972	15297972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	227	635	0	ENST00000263388.2:c.1784G>A	p.Gly595Asp	p.G595D	ENST00000263388	NM_000435.2	595	gGc/gAc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15300125	15300125	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201917592		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	167	513	0	ENST00000263388.2:c.1151C>T	p.Thr384Met	p.T384M	ENST00000263388	NM_000435.2	384	aCg/aTg																																																																														
BRD4	0	MSKCC	GRCh37	19	15349918	15349918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	148	417	0	ENST00000263377.2:c.3734C>T	p.Ala1245Val	p.A1245V	ENST00000263377	NM_058243.2	1245	gCc/gTc																																																																														
BRD4	0	MSKCC	GRCh37	19	15376352	15376352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	237	714	0	ENST00000263377.2:c.662C>T	p.Thr221Met	p.T221M	ENST00000263377	NM_058243.2	221	aCg/aTg																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	180	573	4	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																														
UPF1	0	MSKCC	GRCh37	19	18963016	18963016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	196	587	0	ENST00000262803.5:c.883C>T	p.Arg295Trp	p.R295W	ENST00000262803	NM_002911.3	295	Cgg/Tgg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	217	666	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223230	36223230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	264	698	2	ENST00000222270.7:c.5780G>A	p.Arg1927Gln	p.R1927Q	ENST00000222270	NM_014727.1	1927	cGg/cAg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469540	25469540	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	198	548	0	ENST00000264709.3:c.1228G>C	p.Ala410Pro	p.A410P	ENST00000264709	NM_175629.2	410	Gcc/Ccc																																																																														
ALK	0	MSKCC	GRCh37	2	29450530	29450530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	134	525	1	ENST00000389048.3:c.2824G>A	p.Ala942Thr	p.A942T	ENST00000389048	NM_004304.4	942	Gca/Aca																																																																														
EPAS1	0	MSKCC	GRCh37	2	46603887	46603887	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	127	402	0	ENST00000263734.3:c.1244A>T	p.Asp415Val	p.D415V	ENST00000263734	NM_001430.4	415	gAt/gTt																																																																														
EPAS1	0	MSKCC	GRCh37	2	46607784	46607784	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112301187		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	188	614	1	ENST00000263734.3:c.1973G>A	p.Arg658His	p.R658H	ENST00000263734	NM_001430.4	658	cGc/cAc																																																																														
MSH2	0	MSKCC	GRCh37	2	47693895	47693895	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	161	328	0	ENST00000233146.2:c.1613del	p.Asn538ThrfsTer5	p.N538Tfs*5	ENST00000233146	NM_000251.2	537	Aaa/aa																																																																														
REL	0	MSKCC	GRCh37	2	61149631	61149631	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	65	237	0	ENST00000295025.8:c.1821A>T	p.Gln607His	p.Q607H	ENST00000295025	NM_002908.2	607	caA/caT																																																																														
PMS1	0	MSKCC	GRCh37	2	190682810	190682810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	101	323	2	ENST00000441310.2:c.492delA	p.Lys164AsnfsTer6	p.K164Nfs*6	ENST00000441310	NM_000534.4	162	gcA/gc																																																																														
CASP8	0	MSKCC	GRCh37	2	202141631	202141631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	66	372	0	ENST00000358485.4:c.919C>T	p.Arg307Trp	p.R307W	ENST00000358485	NM_001080125.1	307	Cgg/Tgg																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	117	326	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212578280	212578280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	89	364	0	ENST00000342788.4:c.977G>A	p.Cys326Tyr	p.C326Y	ENST00000342788	NM_005235.2	326	tGc/tAc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31388021	31388021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	101	298	0	ENST00000328111.2:c.1822G>A	p.Glu608Lys	p.E608K	ENST00000328111	NM_006892.3	608	Gag/Aag																																																																														
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	98	350	1	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																														
ERG	0	MSKCC	GRCh37	21	39764351	39764351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	98	359	0	ENST00000288319.7:c.761C>A	p.Pro254His	p.P254H	ENST00000288319	NM_182918.3	254	cCc/cAc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	76	251	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41277290	41277290	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	73	250	2	ENST00000349496.5:c.1759C>T	p.Arg587Ter	p.R587*	ENST00000349496	NM_001904.3	587	Cga/Tga																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920370	134920370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	101	362	0	ENST00000398015.3:c.2185G>A	p.Ala729Thr	p.A729T	ENST00000398015	NM_004441.4	729	Gct/Act																																																																														
ATR	0	MSKCC	GRCh37	3	142255002	142255002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	57	188	1	ENST00000350721.4:c.3767C>A	p.Pro1256His	p.P1256H	ENST00000350721	NM_001184.3	1256	cCt/cAt																																																																														
ATR	0	MSKCC	GRCh37	3	142274740	142274741	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	94	271	0	ENST00000350721.4:c.2319_2320delAA	p.Lys773AsnfsTer3	p.K773Nfs*3	ENST00000350721	NM_001184.3	773	aaAAta/aata																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	85	370	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66535435	66535435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	111	348	0	ENST00000273854.3:c.26C>T	p.Ala9Val	p.A9V	ENST00000273854	NM_004439.5	9	gCg/gTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	105	368	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
SDHA	0	MSKCC	GRCh37	5	251485	251485	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	21	31	0	ENST00000264932.6:c.1696C>A	p.Leu566Met	p.L566M	ENST00000264932	NM_004168.2	566	Ctg/Atg																																																																														
IL7R	0	MSKCC	GRCh37	5	35876588	35876588	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	107	349	1	ENST00000303115.3:c.1380A>T	p.Ter460CysextTer7	p.*460Cext*7	ENST00000303115	NM_002185.3	460	tgA/tgT																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178257	56178258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	68	239	0	ENST00000399503.3:c.3236dup	p.Asn1079LysfsTer2	p.N1079Kfs*2	ENST00000399503	NM_005921.1	1077	tca/tcAa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	269	445	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	0	MSKCC	GRCh37	5	112175559	112175559	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	151	245	0	ENST00000257430.4:c.4269del	p.Pro1424GlnfsTer49	p.P1424Qfs*49	ENST00000257430	NM_000038.5	1423	cTt/ct																																																																														
APC	324	MSKCC	GRCh37	5	112178865	112178865	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs762034315		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	75	269	0	ENST00000257430.4:c.7574G>A	p.Arg2525His	p.R2525H	ENST00000257430	NM_000038.5	2525	cGc/cAc																																																																														
NPM1	0	MSKCC	GRCh37	5	170818391	170818391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	43	134	0	ENST00000296930.5:c.221T>C	p.Val74Ala	p.V74A	ENST00000296930	NM_002520.6	74	gTa/gCa																																																																														
FLT4	0	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	180	604	1	ENST00000261937.6:c.1267delC	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056464	26056464	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138308559		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	43	199	0	ENST00000343677.2:c.193G>A	p.Ala65Thr	p.A65T	ENST00000343677	NM_005319.3	65	Gcg/Acg																																																																														
PNRC1	0	MSKCC	GRCh37	6	89790978	89790978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	89	229	0	ENST00000336032.3:c.365C>A	p.Pro122Gln	p.P122Q	ENST00000336032	NM_006813.2	122	cCg/cAg																																																																														
ROS1	0	MSKCC	GRCh37	6	117710605	117710605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	65	251	0	ENST00000368508.3:c.1667C>A	p.Pro556His	p.P556H	ENST00000368508	NM_002944.2	556	cCt/cAt																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138201360	138201360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	90	326	0	ENST00000237289.4:c.2059C>T	p.His687Tyr	p.H687Y	ENST00000237289	NM_001270507.1	687	Cat/Tat																																																																														
SMO	0	MSKCC	GRCh37	7	128851993	128851993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	186	605	0	ENST00000249373.3:c.2065C>T	p.Pro689Ser	p.P689S	ENST00000249373	NM_005631.4	689	Cct/Tct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	113	325	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860697	151860697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	101	377	0	ENST00000262189.6:c.9965G>A	p.Gly3322Asp	p.G3322D	ENST00000262189	NM_170606.2	3322	gGc/gAc																																																																														
PREX2	0	MSKCC	GRCh37	8	69136797	69136797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	146	309	0	ENST00000288368.4:c.4711G>A	p.Ala1571Thr	p.A1571T	ENST00000288368	NM_024870.2	1571	Gca/Aca																																																																														
NBN	0	MSKCC	GRCh37	8	90982742	90982742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	97	230	0	ENST00000265433.3:c.746C>T	p.Ala249Val	p.A249V	ENST00000265433	NM_002485.4	249	gCt/gTt																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739855	145739855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	166	566	1	ENST00000428558.2:c.1675A>G	p.Arg559Gly	p.R559G	ENST00000428558	NM_004260.3	559	Agg/Ggg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8460441	8460441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	81	301	0	ENST00000356435.5:c.3845G>A	p.Cys1282Tyr	p.C1282Y	ENST00000356435		1282	tGc/tAc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	123	395	3	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98240416	98240416	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	92	336	0	ENST00000331920.6:c.1268C>G	p.Thr423Ser	p.T423S	ENST00000331920	NM_000264.3	423	aCc/aGc																																																																														
ABL1	0	MSKCC	GRCh37	9	133753838	133753838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	277	435	1	ENST00000318560.5:c.1307G>A	p.Gly436Asp	p.G436D	ENST00000318560	NM_005157.4	436	gGc/gAc																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	179	625	1	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																														
GATA1	0	MSKCC	GRCh37	X	48650793	48650793	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	211	271	0	ENST00000376670.3:c.662G>T	p.Gly221Val	p.G221V	ENST00000376670	NM_002049.3	221	gGc/gTc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226112	53226112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	151	250	2	ENST00000375401.3:c.2737del	p.Val913TrpfsTer22	p.V913Wfs*22	ENST00000375401	NM_004187.3	913	Gtg/tg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46279864	46279872	+	inframe_deletion	In_Frame_Del	DEL	CAACAGCAA	CAACAGCAA	-			P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	28	205	0	ENST00000371998.3:c.3792_3800del	p.Gln1274_Gln1276del	p.Q1274_Q1276del	ENST00000371998		1264	CAACAGCAA/-																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0028474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	153	463	3	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0028475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	59	409	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	22	179	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006768-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			404	670	606	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46531749	46531749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006768-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			815	436	404	0	ENST00000262741.5:c.598G>A	p.Glu200Lys	p.E200K	ENST00000262741	NM_003629.3	200	Gaa/Aaa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420318	88420318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006768-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			405	253	453	0	ENST00000360948.2:c.2368G>C	p.Glu790Gln	p.E790Q	ENST00000360948	NM_001012338.2	790	Gag/Cag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3819237	3819237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006768-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			981	311	580	0	ENST00000262367.5:c.2998G>A	p.Glu1000Lys	p.E1000K	ENST00000262367	NM_004380.2	1000	Gag/Aag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72923647	72923647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006768-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			850	230	568	0	ENST00000268489.5:c.3431G>T	p.Cys1144Phe	p.C1144F	ENST00000268489	NM_006885.3	1144	tGc/tTc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59853923	59853923	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006768-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			682	201	396	0	ENST00000259008.2:c.1936G>T	p.Val646Phe	p.V646F	ENST00000259008	NM_032043.2	646	Gtt/Ttt																																																																														
STK11	0	MSKCC	GRCh37	19	1226627	1226627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006768-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			197	190	363	0	ENST00000326873.7:c.1283C>T	p.Ser428Leu	p.S428L	ENST00000326873	NM_000455.4	428	tCg/tTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561234	9561234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006768-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			727	203	453	0	ENST00000353224.5:c.548C>G	p.Ser183Cys	p.S183C	ENST00000353224	NM_177990.2	183	tCt/tGt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37871576	37871576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006768-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	355	614	1	ENST00000269571.5:c.1186C>A	p.Gln396Lys	p.Q396K	ENST00000269571		396	Cag/Aag																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42861455	42861455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006768-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	269	545	0	ENST00000398585.3:c.415G>A	p.Ala139Thr	p.A139T	ENST00000398585	NM_001135099.1	139	Gct/Act																																																																														
INPP4B	0	MSKCC	GRCh37	4	143352394	143352394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006768-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			590	272	505	0	ENST00000262992.4:c.19G>T	p.Gly7Trp	p.G7W	ENST00000262992	NM_001101669.1	7	Ggg/Tgg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741429	145741429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006768-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	523	746	1	ENST00000428558.2:c.1074G>A	p.Met358Ile	p.M358I	ENST00000428558	NM_004260.3	358	atG/atA																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807959	3807959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006768-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1191	149	508	0	ENST00000262367.5:c.3460G>A	p.Val1154Met	p.V1154M	ENST00000262367	NM_004380.2	1154	Gtg/Atg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288549	15288549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	10	42	0	ENST00000263388.2:c.4190G>A	p.Gly1397Glu	p.G1397E	ENST00000263388	NM_000435.2	1397	gGg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			79	340	700	0	ENST00000269305.4:c.470T>A	p.Val157Asp	p.V157D	ENST00000269305	NM_001126112.2	157	gTc/gAc																																																																														
WT1	0	MSKCC	GRCh37	11	32450156	32450156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	230	499	0	ENST00000332351.3:c.656C>T	p.Thr219Met	p.T219M	ENST00000332351	NM_024426.4	219	aCg/aTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434732	49434732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			863	245	711	1	ENST00000301067.7:c.6821C>T	p.Ser2274Leu	p.S2274L	ENST00000301067	NM_003482.3	2274	tCg/tTg																																																																														
ATR	0	MSKCC	GRCh37	3	142278167	142278167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	482	555	0	ENST00000350721.4:c.1658C>T	p.Ser553Phe	p.S553F	ENST00000350721	NM_001184.3	553	tCt/tTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49442492	49442492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	221	645	1	ENST00000301067.7:c.4081C>A	p.Gln1361Lys	p.Q1361K	ENST00000301067	NM_003482.3	1361	Cag/Aag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3929859	3929859	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	247	539	0	ENST00000262367.5:c.59C>G	p.Pro20Arg	p.P20R	ENST00000262367	NM_004380.2	20	cCc/cGc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62311285	62311285	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	27	350	0	ENST00000508582.2:c.1193A>G	p.Gln398Arg	p.Q398R	ENST00000508582		398	cAg/cGg																																																																														
ROS1	0	MSKCC	GRCh37	6	117710768	117710768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021045-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	160	448	0	ENST00000368508.3:c.1504T>G	p.Phe502Val	p.F502V	ENST00000368508	NM_002944.2	502	Ttt/Gtt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	145	267	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	310	579	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045875	26045875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	140	417	0	ENST00000540144.1:c.237C>G	p.Phe79Leu	p.F79L	ENST00000540144	NM_003531.2	79	ttC/ttG																																																																														
SPEN	0	MSKCC	GRCh37	1	16199310	16199310	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			150	151	214	0	ENST00000375759.3:c.84-1G>T		p.X28_splice	ENST00000375759	NM_015001.2	28																																																																															
MDM2	0	MSKCC	GRCh37	12	69233496	69233496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	119	350	0	ENST00000462284.1:c.1361G>A	p.Gly454Asp	p.G454D	ENST00000462284	NM_002392.5	454	gGt/gAt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16068451	16068451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			99	20	105	0	ENST00000268712.3:c.460G>A	p.Glu154Lys	p.E154K	ENST00000268712	NM_006311.3	154	Gaa/Aaa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40748601	40748601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200545231		P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			203	102	348	0	ENST00000373198.4:c.2915G>A	p.Arg972Gln	p.R972Q	ENST00000373198	NM_133170.3	972	cGa/cAa																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186501409	186501409	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	143	241	0	ENST00000323963.5:c.10G>T	p.Gly4Cys	p.G4C	ENST00000323963		4	Ggc/Tgc																																																																														
PREX2	0	MSKCC	GRCh37	8	68992752	68992752	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	156	591	0	ENST00000288368.4:c.1717A>G	p.Asn573Asp	p.N573D	ENST00000288368	NM_024870.2	573	Aat/Gat																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971152	21971164	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGCGCCGTGGA	TCCGCGCCGTGGA	CG			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	193	467	2	ENST00000304494.5:c.194_206delinsCG	p.Leu65ProfsTer51	p.L65Pfs*51	ENST00000304494	NM_000077.4	65	cTCCACGGCGCGGAg/cCGg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971152	21971164	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGCGCCGTGGA	TCCGCGCCGTGGA	CG			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	193	467	2	ENST00000304494.5:c.194_206delinsCG	p.Leu65ProfsTer51	p.L65Pfs*51	ENST00000304494	NM_000077.4	65	cTCCACGGCGCGGAg/cCGg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971152	21971164	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGCGCCGTGGA	TCCGCGCCGTGGA	CG			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	193	467	2	ENST00000304494.5:c.194_206delinsCG	p.Leu65ProfsTer51	p.L65Pfs*51	ENST00000304494	NM_000077.4	65	cTCCACGGCGCGGAg/cCGg																																																																														
LMO1	0	MSKCC	GRCh37	11	8251908	8251908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	215	556	0	ENST00000335790.3:c.169C>T	p.Arg57Cys	p.R57C	ENST00000335790	NM_002315.2	57	Cgc/Tgc																																																																														
MGA	0	MSKCC	GRCh37	15	42050033	42050033	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	34	330	0	ENST00000219905.7:c.7187del	p.Arg2396GlnfsTer8	p.R2396Qfs*8	ENST00000219905	NM_001164273.1	2396	cGa/ca																																																																														
ERCC4	0	MSKCC	GRCh37	16	14038612	14038612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	65	329	0	ENST00000311895.7:c.1937G>T	p.Arg646Ile	p.R646I	ENST00000311895	NM_005236.2	646	aGa/aTa																																																																														
NUP93	0	MSKCC	GRCh37	16	56855471	56855471	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	48	310	1	ENST00000308159.5:c.620A>T	p.Asp207Val	p.D207V	ENST00000308159	NM_014669.4	207	gAc/gTc																																																																														
RNF43	0	MSKCC	GRCh37	17	56448310	56448310	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	113	595	0	ENST00000407977.2:c.337C>G	p.Arg113Gly	p.R113G	ENST00000407977		113	Cga/Gga																																																																														
TP53	0	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	367	650	2	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc																																																																														
RB1	0	MSKCC	GRCh37	13	48947603	48947603	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0028302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	217	478	2	ENST00000267163.4:c.1190C>G	p.Ser397Ter	p.S397*	ENST00000267163	NM_000321.2	397	tCa/tGa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	364	569	0	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89717650	89717650	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0028302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	281	551	0	ENST00000371953.3:c.675T>G	p.Tyr225Ter	p.Y225*	ENST00000371953	NM_000314.4	225	taT/taG																																																																														
SOX9	0	MSKCC	GRCh37	17	70117755	70117755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	358	624	1	ENST00000245479.2:c.223G>A	p.Glu75Lys	p.E75K	ENST00000245479	NM_000346.3	75	Gag/Aag																																																																														
FLT1	0	MSKCC	GRCh37	13	29005319	29005319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	276	574	1	ENST00000282397.4:c.942G>T	p.Arg314Ser	p.R314S	ENST00000282397	NM_002019.4	314	agG/agT																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347584	89347584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	288	568	0	ENST00000301030.4:c.5366G>T	p.Arg1789Leu	p.R1789L	ENST00000301030	NM_001256183.1	1789	cGc/cTc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279998	18279998	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	317	496	0	ENST00000222254.8:c.2081T>G	p.Leu694Arg	p.L694R	ENST00000222254	NM_005027.3	694	cTg/cGg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224259	36224259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	273	480	2	ENST00000222270.7:c.6809G>T	p.Ser2270Ile	p.S2270I	ENST00000222270	NM_014727.1	2270	aGc/aTc																																																																														
ALK	0	MSKCC	GRCh37	2	29416484	29416484	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	358	648	0	ENST00000389048.3:c.4469A>C	p.His1490Pro	p.H1490P	ENST00000389048	NM_004304.4	1490	cAc/cCc																																																																														
TERT	0	MSKCC	GRCh37	5	1293949	1293949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	383	772	0	ENST00000310581.5:c.1052G>T	p.Arg351Met	p.R351M	ENST00000310581	NM_198253.2	351	aGg/aTg																																																																														
ROS1	0	MSKCC	GRCh37	6	117704548	117704548	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	230	458	1	ENST00000368508.3:c.2428G>T	p.Glu810Ter	p.E810*	ENST00000368508	NM_002944.2	810	Gaa/Taa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945106	151945106	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	49	380	0	ENST00000262189.6:c.2413A>G	p.Ser805Gly	p.S805G	ENST00000262189	NM_170606.2	805	Agt/Ggt																																																																														
MPL	0	MSKCC	GRCh37	1	43805762	43805762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	350	663	0	ENST00000372470.3:c.818C>T	p.Ser273Phe	p.S273F	ENST00000372470	NM_005373.2	273	tCc/tTc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798597	45798597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	321	634	1	ENST00000372115.3:c.455C>T	p.Ser152Phe	p.S152F	ENST00000372115	NM_001048171.1	152	tCc/tTc																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699486	117699486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	205	410	1	ENST00000369458.3:c.155G>A	p.Gly52Glu	p.G52E	ENST00000369458	NM_024626.3	52	gGa/gAa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120510119	120510120	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	202	360	2	ENST00000256646.2:c.1389_1390delinsTT	p.Pro464Ser	p.P464S	ENST00000256646	NM_024408.3	463	gaCCcc/gaTTcc																																																																														
NUF2	0	MSKCC	GRCh37	1	163325242	163325242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	209	340	1	ENST00000271452.3:c.1378T>C	p.Phe460Leu	p.F460L	ENST00000271452	NM_145697.2	460	Ttc/Ctc																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612711	228612711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	315	667	0	ENST00000366696.1:c.316G>A	p.Glu106Lys	p.E106K	ENST00000366696	NM_003493.2	106	Gag/Aag																																																																														
ARID5B	0	MSKCC	GRCh37	10	63845508	63845508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	74	363	0	ENST00000279873.7:c.1247C>T	p.Pro416Leu	p.P416L	ENST00000279873	NM_032199.2	416	cCc/cTc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274777	123274777	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	118	535	0	ENST00000358487.5:c.1141T>C	p.Tyr381His	p.Y381H	ENST00000358487	NM_000141.4	381	Tac/Cac																																																																														
INPPL1	0	MSKCC	GRCh37	11	71946912	71946912	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	447	782	1	ENST00000298229.2:c.2761T>G	p.Phe921Val	p.F921V	ENST00000298229	NM_001567.3	921	Ttc/Gtc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435338	18435338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	213	440	1	ENST00000266497.5:c.323G>A	p.Gly108Asp	p.G108D	ENST00000266497		108	gGt/gAt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18573945	18573945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	169	346	0	ENST00000266497.5:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000266497		755	Gaa/Aaa																																																																														
ARID2	0	MSKCC	GRCh37	12	46246655	46246656	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	96	192	0	ENST00000334344.6:c.4751_4752del	p.Tyr1584CysfsTer24	p.Y1584Cfs*24	ENST00000334344	NM_152641.2	1583	acATat/acat																																																																														
CDK8	0	MSKCC	GRCh37	13	26927943	26927943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	188	386	1	ENST00000381527.3:c.382G>A	p.Val128Met	p.V128M	ENST00000381527	NM_001260.1	128	Gtg/Atg																																																																														
FLT3	0	MSKCC	GRCh37	13	28589835	28589835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	216	446	1	ENST00000241453.7:c.2545C>T	p.Arg849Cys	p.R849C	ENST00000241453	NM_004119.2	849	Cgt/Tgt																																																																														
FLT3	0	MSKCC	GRCh37	13	28609671	28609671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	276	544	0	ENST00000241453.7:c.1558C>T	p.Leu520Phe	p.L520F	ENST00000241453	NM_004119.2	520	Ctt/Ttt																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134217	41134217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	193	328	0	ENST00000379561.5:c.1411C>T	p.Pro471Ser	p.P471S	ENST00000379561	NM_002015.3	471	Cct/Tct																																																																														
IRS2	0	MSKCC	GRCh37	13	110434574	110434575	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	299	701	2	ENST00000375856.3:c.3826_3827delinsTT	p.Pro1276Phe	p.P1276F	ENST00000375856	NM_003749.2	1276	CCt/TTt																																																																														
IRS2	0	MSKCC	GRCh37	13	110435435	110435436	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	266	646	1	ENST00000375856.3:c.2965_2966delinsTT	p.Pro989Phe	p.P989F	ENST00000375856	NM_003749.2	989	CCt/TTt																																																																														
IRS2	0	MSKCC	GRCh37	13	110435447	110435447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	305	632	1	ENST00000375856.3:c.2954C>A	p.Ser985Tyr	p.S985Y	ENST00000375856	NM_003749.2	985	tCc/tAc																																																																														
TSHR	0	MSKCC	GRCh37	14	81422091	81422091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	233	454	0	ENST00000298171.2:c.67G>A	p.Gly23Arg	p.G23R	ENST00000298171	NM_000369.2	23	Ggg/Agg																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	208	771	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
MGA	0	MSKCC	GRCh37	15	42021428	42021428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	116	465	0	ENST00000219905.7:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000219905	NM_001164273.1	1242	Cga/Tga																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729142	66729142	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	149	608	0	ENST00000307102.5:c.350T>C	p.Val117Ala	p.V117A	ENST00000307102	NM_002755.3	117	gTt/gCt																																																																														
SLX4	0	MSKCC	GRCh37	16	3639573	3639573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	415	794	0	ENST00000294008.3:c.4066C>T	p.Pro1356Ser	p.P1356S	ENST00000294008	NM_032444.2	1356	Ccg/Tcg																																																																														
SLX4	0	MSKCC	GRCh37	16	3647643	3647643	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	233	827	2	ENST00000294008.3:c.1420C>T	p.Gln474Ter	p.Q474*	ENST00000294008	NM_032444.2	474	Cag/Tag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3832915	3832915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	159	336	0	ENST00000262367.5:c.1343C>T	p.Ser448Phe	p.S448F	ENST00000262367	NM_004380.2	448	tCt/tTt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923318	9923318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	245	522	0	ENST00000330684.3:c.1969G>A	p.Glu657Lys	p.E657K	ENST00000330684	NM_001134407.1	657	Gaa/Aaa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934623	9934623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	108	377	3	ENST00000330684.3:c.1532C>T	p.Ser511Leu	p.S511L	ENST00000330684	NM_001134407.1	511	tCg/tTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031841	10031841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	280	632	1	ENST00000330684.3:c.982G>A	p.Glu328Lys	p.E328K	ENST00000330684	NM_001134407.1	328	Gag/Aag																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029422	14029422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	85	363	1	ENST00000311895.7:c.1633G>A	p.Gly545Arg	p.G545R	ENST00000311895	NM_005236.2	545	Gga/Aga																																																																														
PLCG2	0	MSKCC	GRCh37	16	81972484	81972484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	290	482	1	ENST00000359376.3:c.3277G>A	p.Glu1093Lys	p.E1093K	ENST00000359376	NM_002661.3	1093	Gag/Aag																																																																														
NF1	0	MSKCC	GRCh37	17	29654712	29654712	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	94	323	0	ENST00000358273.4:c.5464C>T	p.Gln1822Ter	p.Q1822*	ENST00000358273	NM_001042492.2	1822	Cag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29665053	29665053	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	249	423	0	ENST00000358273.4:c.6715C>T	p.Gln2239Ter	p.Q2239*	ENST00000358273	NM_001042492.2	2239	Caa/Taa																																																																														
CDK12	0	MSKCC	GRCh37	17	37650788	37650788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	162	577	0	ENST00000447079.4:c.2260G>A	p.Ala754Thr	p.A754T	ENST00000447079	NM_015083.1	754	Gct/Act																																																																														
BRIP1	0	MSKCC	GRCh37	17	59820400	59820400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	120	400	0	ENST00000259008.2:c.2353C>T	p.Pro785Ser	p.P785S	ENST00000259008	NM_032043.2	785	Cct/Tct																																																																														
H3F3B	0	MSKCC	GRCh37	17	73775164	73775164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	471	586	0	ENST00000254810.4:c.92C>T	p.Pro31Leu	p.P31L	ENST00000254810	NM_005324.3	31	cCc/cTc																																																																														
STK11	0	MSKCC	GRCh37	19	1207092	1207092	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	852	789	3	ENST00000326873.7:c.180C>G	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/taG																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138591	11138591	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	327	591	1	ENST00000344626.4:c.3347T>C	p.Phe1116Ser	p.F1116S	ENST00000344626	NM_003072.3	1116	tTt/tCt																																																																														
UPF1	0	MSKCC	GRCh37	19	18965940	18965940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	290	630	3	ENST00000262803.5:c.1433C>T	p.Ala478Val	p.A478V	ENST00000262803	NM_002911.3	478	gCc/gTc																																																																														
ALK	0	MSKCC	GRCh37	2	29416557	29416557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	320	572	0	ENST00000389048.3:c.4396C>T	p.Pro1466Ser	p.P1466S	ENST00000389048	NM_004304.4	1466	Cct/Tct																																																																														
MSH2	0	MSKCC	GRCh37	2	47641445	47641445	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	230	458	0	ENST00000233146.2:c.830T>C	p.Leu277Ser	p.L277S	ENST00000233146	NM_000251.2	277	tTa/tCa																																																																														
ACVR1	0	MSKCC	GRCh37	2	158634711	158634711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	174	336	0	ENST00000263640.3:c.475C>T	p.Pro159Ser	p.P159S	ENST00000263640	NM_001105.4	159	Ccc/Tcc																																																																														
PMS1	0	MSKCC	GRCh37	2	190717451	190717451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	221	362	0	ENST00000441310.2:c.770G>A	p.Arg257Lys	p.R257K	ENST00000441310	NM_000534.4	257	aGa/aAa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212483981	212483981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	196	431	0	ENST00000342788.4:c.2222G>A	p.Gly741Glu	p.G741E	ENST00000342788	NM_005235.2	741	gGa/gAa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812196	212812196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	174	349	0	ENST00000342788.4:c.380G>A	p.Gly127Glu	p.G127E	ENST00000342788	NM_005235.2	127	gGa/gAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546761	9546761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	180	295	1	ENST00000353224.5:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000353224	NM_177990.2	421	Gac/Aac																																																																														
PAK7	0	MSKCC	GRCh37	20	9561102	9561102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	181	340	0	ENST00000353224.5:c.680C>T	p.Pro227Leu	p.P227L	ENST00000353224	NM_177990.2	227	cCt/cTt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727125	40727125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	314	587	0	ENST00000373198.4:c.3839G>T	p.Trp1280Leu	p.W1280L	ENST00000373198	NM_133170.3	1280	tGg/tTg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264401	46264401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	231	450	0	ENST00000371998.3:c.1448C>T	p.Ser483Phe	p.S483F	ENST00000371998		483	tCt/tTt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164451	36164451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	61	321	1	ENST00000300305.3:c.1424C>T	p.Ala475Val	p.A475V	ENST00000300305		475	gCc/gTc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42860364	42860364	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	347	668	0	ENST00000398585.3:c.513T>A	p.Asp171Glu	p.D171E	ENST00000398585	NM_001135099.1	171	gaT/gaA																																																																														
PPARG	0	MSKCC	GRCh37	3	12447543	12447544	+	missense_variant	Missense_Mutation	DNP	CG	CG	TA			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	338	588	0	ENST00000287820.6:c.782_783delinsTA	p.Ala261Val	p.A261V	ENST00000287820	NM_015869.4	261	gCG/gTA																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713336	30713336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	234	462	0	ENST00000359013.4:c.736G>A	p.Glu246Lys	p.E246K	ENST00000359013	NM_001024847.2	246	Gaa/Aaa																																																																														
SETD2	0	MSKCC	GRCh37	3	47163694	47163694	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	226	358	0	ENST00000409792.3:c.2432A>T	p.Asn811Ile	p.N811I	ENST00000409792	NM_014159.6	811	aAt/aTt																																																																														
MITF	0	MSKCC	GRCh37	3	69987040	69987040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	303	588	0	ENST00000352241.4:c.422A>G	p.Gln141Arg	p.Q141R	ENST00000352241	NM_198159.2	141	cAg/cGg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89498451	89498451	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	162	329	0	ENST00000336596.2:c.2423G>A	p.Trp808Ter	p.W808*	ENST00000336596	NM_005233.5	808	tGg/tAg																																																																														
ATR	0	MSKCC	GRCh37	3	142280115	142280115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	225	463	0	ENST00000350721.4:c.1319C>T	p.Pro440Leu	p.P440L	ENST00000350721	NM_001184.3	440	cCt/cTt																																																																														
TP63	0	MSKCC	GRCh37	3	189612250	189612250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	209	388	0	ENST00000264731.3:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000264731	NM_003722.4	668	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	232	504	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	0	MSKCC	GRCh37	5	38944588	38944588	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	214	382	0	ENST00000357387.3:c.4873A>T	p.Ser1625Cys	p.S1625C	ENST00000357387	NM_152756.3	1625	Agt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175780	112175781	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TA			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	130	301	0	ENST00000257430.4:c.4489_4490delinsTA	p.Pro1497Ter	p.P1497*	ENST00000257430	NM_000038.5	1497	CCa/TAa																																																																														
APC	0	MSKCC	GRCh37	5	112177425	112177425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	195	358	1	ENST00000257430.4:c.6134C>T	p.Ser2045Phe	p.S2045F	ENST00000257430	NM_000038.5	2045	tCc/tTc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149509341	149509341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	259	406	0	ENST00000261799.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000261799	NM_002609.3	520	Gag/Aag																																																																														
FLT4	0	MSKCC	GRCh37	5	180040018	180040018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	362	710	0	ENST00000261937.6:c.3424C>T	p.Pro1142Ser	p.P1142S	ENST00000261937	NM_182925.4	1142	Ccc/Tcc																																																																														
MDC1	0	MSKCC	GRCh37	6	30671556	30671556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	153	692	0	ENST00000376406.3:c.5404G>A	p.Glu1802Lys	p.E1802K	ENST00000376406	NM_014641.2	1802	Gag/Aag																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324160	31324160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	626	727	1	ENST00000412585.2:c.403C>T	p.Arg135Cys	p.R135C	ENST00000412585	NM_005514.6	135	Cgc/Tgc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982036	93982036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	84	369	0	ENST00000369303.4:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000369303	NM_004440.3	477	Gaa/Aaa																																																																														
ROS1	0	MSKCC	GRCh37	6	117683852	117683852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	113	503	0	ENST00000368508.3:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000368508	NM_002944.2	1099	Gaa/Aaa																																																																														
ESR1	0	MSKCC	GRCh37	6	152415566	152415566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	158	568	0	ENST00000206249.3:c.1416G>C	p.Lys472Asn	p.K472N	ENST00000206249	NM_000125.3	472	aaG/aaC																																																																														
PREX2	0	MSKCC	GRCh37	8	68934283	68934283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	253	417	2	ENST00000288368.4:c.349C>T	p.Arg117Cys	p.R117C	ENST00000288368	NM_024870.2	117	Cgt/Tgt																																																																														
PREX2	0	MSKCC	GRCh37	8	68939506	68939506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	241	436	1	ENST00000288368.4:c.491G>A	p.Gly164Glu	p.G164E	ENST00000288368	NM_024870.2	164	gGa/gAa																																																																														
PREX2	0	MSKCC	GRCh37	8	68984765	68984765	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	174	451	0	ENST00000288368.4:c.1529T>A	p.Val510Glu	p.V510E	ENST00000288368	NM_024870.2	510	gTg/gAg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21968234	21968234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	164	353	0	ENST00000304494.5:c.465delC	p.Asp156IlefsTer37	p.D156Ifs*37	ENST00000304494	NM_000077.4	155	ccC/cc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21968234	21968234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	164	353	0	ENST00000304494.5:c.465delC	p.Asp156IlefsTer37	p.D156Ifs*37	ENST00000304494	NM_000077.4	155	ccC/cc																																																																														
TEK	0	MSKCC	GRCh37	9	27173241	27173241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	292	635	1	ENST00000380036.4:c.782G>A	p.Gly261Asp	p.G261D	ENST00000380036	NM_000459.3	261	gGc/gAc																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409446	80409447	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	193	353	0	ENST00000286548.4:c.667_668delinsAA	p.Val223Asn	p.V223N	ENST00000286548	NM_002072.3	223	GTc/AAc																																																																														
ABL1	0	MSKCC	GRCh37	9	133760028	133760028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	403	835	1	ENST00000318560.5:c.2351C>T	p.Pro784Leu	p.P784L	ENST00000318560	NM_005157.4	784	cCc/cTc																																																																														
ATRX	0	MSKCC	GRCh37	X	76937185	76937185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	263	227	0	ENST00000373344.5:c.3563C>T	p.Ser1188Phe	p.S1188F	ENST00000373344	NM_000489.3	1188	tCc/tTc																																																																														
STAG2	0	MSKCC	GRCh37	X	123199756	123199756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	44	261	0	ENST00000218089.9:c.2056C>G	p.Gln686Glu	p.Q686E	ENST00000218089	NM_001042749.1	686	Cag/Gag																																																																														
TP53	0	MSKCC	GRCh37	17	7579368	7579368	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	223	724	0	ENST00000269305.4:c.319T>G	p.Tyr107Asp	p.Y107D	ENST00000269305	NM_001126112.2	107	Tac/Gac																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446746	49446746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	196	470	0	ENST00000301067.7:c.1064G>T	p.Gly355Val	p.G355V	ENST00000301067	NM_003482.3	355	gGt/gTt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99472808	99472808	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	179	367	0	ENST00000268035.6:c.2804A>G	p.His935Arg	p.H935R	ENST00000268035	NM_000875.3	935	cAt/cGt																																																																														
NF1	0	MSKCC	GRCh37	17	29683976	29683976	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0028480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	155	405	0	ENST00000358273.4:c.7739-2A>G		p.X2580_splice	ENST00000358273	NM_001042492.2	2580																																																																															
GNA11	0	MSKCC	GRCh37	19	3115027	3115027	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	141	736	0	ENST00000078429.4:c.562G>C	p.Gly188Arg	p.G188R	ENST00000078429	NM_002067.2	188	Ggc/Cgc																																																																														
WWTR1	0	MSKCC	GRCh37	3	149245643	149245643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	223	626	0	ENST00000360632.3:c.885C>G	p.Ser295Arg	p.S295R	ENST00000360632	NM_015472.4	295	agC/agG																																																																														
HGF	0	MSKCC	GRCh37	7	81392039	81392039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	72	186	0	ENST00000222390.5:c.238C>G	p.Leu80Val	p.L80V	ENST00000222390	NM_000601.4	80	Ctt/Gtt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98270514	98270514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	148	428	0	ENST00000331920.6:c.130G>T	p.Ala44Ser	p.A44S	ENST00000331920	NM_000264.3	44	Gcg/Tcg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412029	63412029	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	72	589	0	ENST00000330258.3:c.1138G>T	p.Glu380Ter	p.E380*	ENST00000330258	NM_152424.3	380	Gag/Tag																																																																														
MED12	0	MSKCC	GRCh37	X	70345907	70345907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	64	436	0	ENST00000374080.3:c.2444G>A	p.Arg815Gln	p.R815Q	ENST00000374080		815	cGg/cAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76907626	76907626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	70	461	0	ENST00000373344.5:c.4535G>T	p.Arg1512Leu	p.R1512L	ENST00000373344	NM_000489.3	1512	cGt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	250	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	253	418	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
DICER1	0	MSKCC	GRCh37	14	95557642	95557642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	146	450	1	ENST00000343455.3:c.5425G>A	p.Gly1809Arg	p.G1809R	ENST00000343455	NM_177438.2	1809	Ggg/Agg																																																																														
ATM	0	MSKCC	GRCh37	11	108160451	108160451	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	153	421	0	ENST00000278616.4:c.4363del	p.Ser1455ValfsTer3	p.S1455Vfs*3	ENST00000278616	NM_000051.3	1453	atA/at																																																																														
PTEN	0	MSKCC	GRCh37	10	89711993	89711993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	116	275	0	ENST00000371953.3:c.611C>T	p.Pro204Leu	p.P204L	ENST00000371953	NM_000314.4	204	cCa/cTa																																																																														
DICER1	0	MSKCC	GRCh37	14	95574406	95574406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	120	202	0	ENST00000343455.3:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000343455	NM_177438.2	821	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100943	27100943	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	322	506	1	ENST00000324856.7:c.4225C>T	p.Gln1409Ter	p.Q1409*	ENST00000324856	NM_006015.4	1409	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89653861	89653862	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	141	364	0	ENST00000371953.3:c.160dup	p.Val54GlyfsTer9	p.V54Gfs*9	ENST00000371953	NM_000314.4	53	-/G																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137051	64137051	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	159	609	0	ENST00000334205.4:c.1562A>T	p.His521Leu	p.H521L	ENST00000334205	NM_003942.2	521	cAc/cTc																																																																														
CTCF	0	MSKCC	GRCh37	16	67644964	67644965	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0028483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	137	473	0	ENST00000264010.4:c.229_230del	p.Val77AsnfsTer62	p.V77Nfs*62	ENST00000264010	NM_006565.3	77	GTa/a																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928070	178928087	+	inframe_deletion	In_Frame_Del	DEL	CATGGATTAGAAGATTTG	CATGGATTAGAAGATTTG	-			P-0028483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	120	459	0	ENST00000263967.3:c.1349_1366del	p.His450_Leu455del	p.H450_L455del	ENST00000263967	NM_006218.2	450	CATGGATTAGAAGATTTG/-																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	75	341	0	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	87	349	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	112	631	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	103	299	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	75	293	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223796	53223796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	54	735	0	ENST00000375401.3:c.3563G>C	p.Cys1188Ser	p.C1188S	ENST00000375401	NM_004187.3	1188	tGt/tCt																																																																														
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	30	257	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	112	552	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	43	311	1	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	99	556	2	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
KIT	0	MSKCC	GRCh37	4	55564642	55564642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	51	452	2	ENST00000288135.5:c.530G>A	p.Arg177His	p.R177H	ENST00000288135	NM_000222.2	177	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	29	598	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	118	445	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	36	499	2	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
POLE	0	MSKCC	GRCh37	12	133237689	133237689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	92	510	0	ENST00000320574.5:c.2926C>T	p.Arg976Cys	p.R976C	ENST00000320574	NM_006231.2	976	Cgc/Tgc																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	118	505	3	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	65	321	5	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																														
FLT1	0	MSKCC	GRCh37	13	29008054	29008054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	27	305	0	ENST00000282397.4:c.715C>A	p.Pro239Thr	p.P239T	ENST00000282397	NM_002019.4	239	Cca/Aca																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	14	279	3	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64136070	64136070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	78	531	1	ENST00000334205.4:c.1331G>A	p.Arg444His	p.R444H	ENST00000334205	NM_003942.2	444	cGc/cAc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169952	32169952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	51	639	0	ENST00000375023.3:c.3656G>A	p.Arg1219Gln	p.R1219Q	ENST00000375023	NM_004557.3	1219	cGg/cAg																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	40	423	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258979	153258979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	30	223	0	ENST00000281708.4:c.836A>G	p.Asp279Gly	p.D279G	ENST00000281708	NM_033632.3	279	gAc/gGc																																																																														
ARAF	0	MSKCC	GRCh37	X	47422716	47422716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	41	437	3	ENST00000377045.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000377045	NM_001654.4	63	cGa/cAa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	148	648	3	ENST00000344626.4:c.810delC	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																																																														
RB1	0	MSKCC	GRCh37	13	48954342	48954342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	38	279	0	ENST00000267163.4:c.1463C>T	p.Ala488Val	p.A488V	ENST00000267163	NM_000321.2	488	gCg/gTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400005	139400005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	133	629	1	ENST00000277541.6:c.4343C>T	p.Ala1448Val	p.A1448V	ENST00000277541	NM_017617.3	1448	gCg/gTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40979319	40979319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	36	455	0	ENST00000373198.4:c.1814C>T	p.Thr605Met	p.T605M	ENST00000373198	NM_133170.3	605	aCg/aTg																																																																														
CDK12	0	MSKCC	GRCh37	17	37627418	37627418	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	51	556	2	ENST00000447079.4:c.1337del	p.Lys446SerfsTer6	p.K446Sfs*6	ENST00000447079	NM_015083.1	445	Aaa/aa																																																																														
JAK3	0	MSKCC	GRCh37	19	17955111	17955112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	119	590	2	ENST00000458235.1:c.115dupC	p.Gln39ProfsTer13	p.Q39Pfs*13	ENST00000458235	NM_000215.3	39	cag/cCag																																																																														
NRAS	0	MSKCC	GRCh37	1	115256439	115256439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	75	344	0	ENST00000369535.4:c.272C>T	p.Ala91Val	p.A91V	ENST00000369535	NM_002524.4	91	gCg/gTg																																																																														
POLD1	0	MSKCC	GRCh37	19	50905061	50905061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	92	484	0	ENST00000440232.2:c.347delC	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	115	Ccc/cc																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	133	455	3	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																														
ARID2	0	MSKCC	GRCh37	12	46285630	46285630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	63	372	0	ENST00000334344.6:c.4990C>T	p.Pro1664Ser	p.P1664S	ENST00000334344	NM_152641.2	1664	Cca/Tca																																																																														
JAK1	0	MSKCC	GRCh37	1	65307280	65307283	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	28	274	0	ENST00000342505.4:c.2405_2408delAAGA	p.Lys802ArgfsTer11	p.K802Rfs*11	ENST00000342505	NM_002227.2	802	aAAGAg/ag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15295773	15295773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	144	784	3	ENST00000263388.2:c.2354G>A	p.Arg785His	p.R785H	ENST00000263388	NM_000435.2	785	cGc/cAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636766	8636766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	102	401	0	ENST00000356435.5:c.143C>T	p.Thr48Met	p.T48M	ENST00000356435		48	aCg/aTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	118	535	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189472	94189473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	68	397	1	ENST00000323929.3:c.1532dup	p.Asn511LysfsTer3	p.N511Kfs*3	ENST00000323929	NM_005591.3	511	aat/aaAt																																																																														
SETD2	0	MSKCC	GRCh37	3	47164508	47164508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201756643		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	61	300	1	ENST00000409792.3:c.1618C>T	p.Arg540Ter	p.R540*	ENST00000409792	NM_014159.6	540	Cga/Tga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	132	451	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
NF1	0	MSKCC	GRCh37	17	29556250	29556250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	52	378	0	ENST00000358273.4:c.2617C>T	p.Arg873Cys	p.R873C	ENST00000358273	NM_001042492.2	873	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	33	531	2	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602518	10602518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	93	519	1	ENST00000171111.5:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000171111	NM_203500.1	354	Cgg/Tgg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155654	56155654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	50	307	0	ENST00000399503.3:c.746G>A	p.Arg249His	p.R249H	ENST00000399503	NM_005921.1	249	cGc/cAc																																																																														
ATR	0	MSKCC	GRCh37	3	142274740	142274741	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	46	317	0	ENST00000350721.4:c.2319_2320delAA	p.Lys773AsnfsTer3	p.K773Nfs*3	ENST00000350721	NM_001184.3	773	aaAAta/aata																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36218451	36218451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	70	532	0	ENST00000222270.7:c.4235del	p.Gly1412AlafsTer10	p.G1412Afs*10	ENST00000222270	NM_014727.1	1410	caG/ca																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680722	88680722	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	81	488	0	ENST00000360948.2:c.535del	p.Glu179ArgfsTer24	p.E179Rfs*24	ENST00000360948	NM_001012338.2	179	Gag/ag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43707977	43707977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	141	615	0	ENST00000382044.4:c.4904G>A	p.Arg1635His	p.R1635H	ENST00000382044	NM_001141980.1	1635	cGc/cAc																																																																														
IRS2	0	MSKCC	GRCh37	13	110436815	110436815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	65	606	2	ENST00000375856.3:c.1586del	p.Pro529ArgfsTer15	p.P529Rfs*15	ENST00000375856	NM_003749.2	529	cCg/cg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	57	286	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40683721	40683721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	126	467	0	ENST00000249776.8:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000249776	NM_033286.3	238	cGa/cAa																																																																														
RBM10	0	MSKCC	GRCh37	X	47034427	47034427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	63	537	1	ENST00000329236.7:c.281G>A	p.Arg94Gln	p.R94Q	ENST00000329236	NM_001204466.1	94	cGg/cAg																																																																														
MUTYH	0	MSKCC	GRCh37	1	45795081	45795081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	63	436	3	ENST00000372115.3:c.1505C>T	p.Pro502Leu	p.P502L	ENST00000372115	NM_001048171.1	502	cCg/cTg																																																																														
AKT3	0	MSKCC	GRCh37	1	243828186	243828186	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	34	302	0	ENST00000263826.5:c.173-1G>A		p.X58_splice	ENST00000263826	NM_005465.4	58																																																																															
RET	0	MSKCC	GRCh37	10	43620390	43620390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	94	429	0	ENST00000355710.3:c.2999A>G	p.Asp1000Gly	p.D1000G	ENST00000355710	NM_020975.4	1000	gAc/gGc																																																																														
MEN1	0	MSKCC	GRCh37	11	64571894	64571895	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	218	822	0	ENST00000337652.1:c.1759_1760del	p.Gln587ValfsTer14	p.Q587Vfs*14	ENST00000337652	NM_130803.2	587	CAg/g																																																																														
PGR	0	MSKCC	GRCh37	11	100998423	100998423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	39	326	0	ENST00000325455.5:c.1379G>A	p.Cys460Tyr	p.C460Y	ENST00000325455	NM_001202474.3	460	tGc/tAc																																																																														
ATM	0	MSKCC	GRCh37	11	108199803	108199803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	67	221	1	ENST00000278616.4:c.7145G>A	p.Gly2382Glu	p.G2382E	ENST00000278616	NM_000051.3	2382	gGa/gAa																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870955	12870955	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	68	301	0	ENST00000228872.4:c.182A>C	p.Asn61Thr	p.N61T	ENST00000228872	NM_004064.3	61	aAt/aCt																																																																														
ARID2	0	MSKCC	GRCh37	12	46245225	46245225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	33	396	0	ENST00000334344.6:c.3319G>A	p.Ala1107Thr	p.A1107T	ENST00000334344	NM_152641.2	1107	Gca/Aca																																																																														
HNF1A	0	MSKCC	GRCh37	12	121435295	121435296	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	102	475	0	ENST00000257555.6:c.1330_1331del	p.Gln444GlufsTer104	p.Q444Efs*104	ENST00000257555		443	gCA/g																																																																														
POLE	0	MSKCC	GRCh37	12	133233811	133233811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	44	467	1	ENST00000320574.5:c.3493G>A	p.Asp1165Asn	p.D1165N	ENST00000320574	NM_006231.2	1165	Gac/Aac																																																																														
POLE	0	MSKCC	GRCh37	12	133249748	133249748	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	56	314	0	ENST00000320574.5:c.1473+2T>C		p.X491_splice	ENST00000320574	NM_006231.2	491																																																																															
LATS2	0	MSKCC	GRCh37	13	21562141	21562141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	243	799	0	ENST00000382592.4:c.1778G>A	p.Arg593His	p.R593H	ENST00000382592	NM_014572.2	593	cGc/cAc																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66779632	66779632	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	40	371	0	ENST00000307102.5:c.960+2T>C		p.X320_splice	ENST00000307102	NM_002755.3	320																																																																															
IGF1R	0	MSKCC	GRCh37	15	99482547	99482547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	62	475	0	ENST00000268035.6:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000268035	NM_000875.3	1139	Cgg/Tgg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807319	3807319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	53	383	0	ENST00000262367.5:c.3668G>A	p.Arg1223His	p.R1223H	ENST00000262367	NM_004380.2	1223	cGc/cAc																																																																														
SOCS1	0	MSKCC	GRCh37	16	11348869	11348869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	22	209	0	ENST00000332029.2:c.467C>A	p.Ala156Glu	p.A156E	ENST00000332029	NM_003745.1	156	gCg/gAg																																																																														
CTCF	0	MSKCC	GRCh37	16	67644845	67644845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	125	414	0	ENST00000264010.4:c.110C>T	p.Ala37Val	p.A37V	ENST00000264010	NM_006565.3	37	gCc/gTc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822127	72822127	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	37	395	0	ENST00000268489.5:c.10048C>T	p.Gln3350Ter	p.Q3350*	ENST00000268489	NM_006885.3	3350	Cag/Tag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831172	72831172	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	87	388	0	ENST00000268489.5:c.5409del	p.Ser1804ValfsTer10	p.S1804Vfs*10	ENST00000268489	NM_006885.3	1803	ccC/cc																																																																														
NF1	0	MSKCC	GRCh37	17	29653022	29653022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	51	310	1	ENST00000358273.4:c.5020G>A	p.Val1674Ile	p.V1674I	ENST00000358273	NM_001042492.2	1674	Gtc/Atc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245162	41245162	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	37	580	0	ENST00000357654.3:c.2386del	p.Thr796GlnfsTer7	p.T796Qfs*7	ENST00000357654	NM_007294.3	796	Aca/ca																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532568	63532568	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	129	558	1	ENST00000307078.5:c.2011delC	p.Arg671AlafsTer18	p.R671Afs*18	ENST00000307078	NM_004655.3	671	Cgc/gc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63534458	63534458	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	62	506	0	ENST00000307078.5:c.1063A>G	p.Thr355Ala	p.T355A	ENST00000307078	NM_004655.3	355	Acc/Gcc																																																																														
BCL2	0	MSKCC	GRCh37	18	60985752	60985754	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	24	213	0	ENST00000333681.4:c.146_148del	p.Phe49del	p.F49del	ENST00000333681		49	tTCTcc/tcc																																																																														
BRD4	0	MSKCC	GRCh37	19	15353791	15353791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	119	520	1	ENST00000263377.2:c.3089C>T	p.Pro1030Leu	p.P1030L	ENST00000263377	NM_058243.2	1030	cCg/cTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213944	36213944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	129	662	2	ENST00000222270.7:c.2770C>T	p.Arg924Trp	p.R924W	ENST00000222270	NM_014727.1	924	Cgg/Tgg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216679	36216679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	105	477	0	ENST00000222270.7:c.3845C>T	p.Pro1282Leu	p.P1282L	ENST00000222270	NM_014727.1	1282	cCc/cTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36218383	36218383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	141	657	0	ENST00000222270.7:c.4162T>C	p.Tyr1388His	p.Y1388H	ENST00000222270	NM_014727.1	1388	Tac/Cac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36220932	36220932	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	55	306	0	ENST00000222270.7:c.4982A>C	p.Asn1661Thr	p.N1661T	ENST00000222270	NM_014727.1	1661	aAc/aCc																																																																														
CIC	0	MSKCC	GRCh37	19	42791698	42791698	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	87	485	2	ENST00000575354.2:c.584G>A	p.Arg195Gln	p.R195Q	ENST00000575354	NM_015125.3	195	cGg/cAg																																																																														
CIC	0	MSKCC	GRCh37	19	42796535	42796535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	122	639	1	ENST00000575354.2:c.3092C>T	p.Ser1031Leu	p.S1031L	ENST00000575354	NM_015125.3	1031	tCg/tTg																																																																														
ALK	0	MSKCC	GRCh37	2	29940533	29940533	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	136	532	0	ENST00000389048.3:c.698T>C	p.Met233Thr	p.M233T	ENST00000389048	NM_004304.4	233	aTg/aCg																																																																														
ALK	0	MSKCC	GRCh37	2	30143223	30143223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	80	564	0	ENST00000389048.3:c.303G>T	p.Leu101Phe	p.L101F	ENST00000389048	NM_004304.4	101	ttG/ttT																																																																														
EPAS1	0	MSKCC	GRCh37	2	46574040	46574040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	34	489	0	ENST00000263734.3:c.55T>A	p.Ser19Thr	p.S19T	ENST00000263734	NM_001430.4	19	Tcc/Acc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46605131	46605131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	43	585	0	ENST00000263734.3:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000263734	NM_001430.4	450	Gag/Aag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251619	212251619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	30	353	0	ENST00000342788.4:c.3440A>G	p.Glu1147Gly	p.E1147G	ENST00000342788	NM_005235.2	1147	gAg/gGg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021634	31021634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	119	439	0	ENST00000375687.4:c.1633C>A	p.Arg545Ser	p.R545S	ENST00000375687	NM_015338.5	545	Cgt/Agt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023798	31023798	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	94	517	0	ENST00000375687.4:c.3283T>C	p.Ser1095Pro	p.S1095P	ENST00000375687	NM_015338.5	1095	Tcc/Ccc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46252731	46252731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	22	317	1	ENST00000371998.3:c.160G>A	p.Ala54Thr	p.A54T	ENST00000371998		54	Gcc/Acc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29130637	29130637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142243299		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	21	418	0	ENST00000328354.6:c.73G>A	p.Val25Ile	p.V25I	ENST00000328354	NM_007194.3	25	Gtt/Att																																																																														
RAC2	0	MSKCC	GRCh37	22	37622751	37622751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	83	629	0	ENST00000249071.6:c.541C>T	p.Pro181Ser	p.P181S	ENST00000249071	NM_002872.4	181	Ccc/Tcc																																																																														
MST1R	0	MSKCC	GRCh37	3	49936430	49936430	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	155	664	0	ENST00000296474.3:c.1420-2A>G		p.X474_splice	ENST00000296474	NM_002447.2	474																																																																															
SHQ1	0	MSKCC	GRCh37	3	72842184	72842184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	16	207	0	ENST00000325599.8:c.1064A>G	p.Lys355Arg	p.K355R	ENST00000325599	NM_018130.2	355	aAa/aGa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134884858	134884858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	44	336	1	ENST00000398015.3:c.1634C>T	p.Ser545Leu	p.S545L	ENST00000398015	NM_004441.4	545	tCg/tTg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138402552	138402552	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	85	373	0	ENST00000289153.2:c.2393A>T	p.Asp798Val	p.D798V	ENST00000289153	NM_006219.2	798	gAt/gTt																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138456712	138456712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	30	363	0	ENST00000289153.2:c.638A>G	p.Gln213Arg	p.Q213R	ENST00000289153	NM_006219.2	213	cAa/cGa																																																																														
SOX2	0	MSKCC	GRCh37	3	181430501	181430501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	137	616	0	ENST00000325404.1:c.353C>T	p.Thr118Met	p.T118M	ENST00000325404	NM_003106.3	118	aCg/aTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187540670	187540670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	93	309	0	ENST00000441802.2:c.7070C>T	p.Thr2357Met	p.T2357M	ENST00000441802	NM_005245.3	2357	aCg/aTg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31429619	31429619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	33	541	0	ENST00000344624.3:c.3179C>T	p.Ala1060Val	p.A1060V	ENST00000344624		1060	gCc/gTc																																																																														
APC	0	MSKCC	GRCh37	5	112177731	112177731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	75	327	0	ENST00000257430.4:c.6440C>T	p.Pro2147Leu	p.P2147L	ENST00000257430	NM_000038.5	2147	cCa/cTa																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911125	29911125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	35	531	1	ENST00000376809.5:c.424T>C	p.Tyr142His	p.Y142H	ENST00000376809	NM_002116.7	142	Tac/Cac																																																																														
ARID1B	0	MSKCC	GRCh37	6	157454234	157454234	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150140314		P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	136	447	1	ENST00000346085.5:c.2444C>T	p.Ser815Leu	p.S815L	ENST00000346085	NM_020732.3	815	tCg/tTg																																																																														
PMS2	0	MSKCC	GRCh37	7	6037019	6037020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	140	412	0	ENST00000265849.7:c.740dup	p.Ser248Ter	p.S248*	ENST00000265849	NM_000535.5	247	cct/ccCt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249166	55249166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	63	490	2	ENST00000275493.2:c.2464G>A	p.Ala822Thr	p.A822T	ENST00000275493	NM_005228.3	822	Gca/Aca																																																																														
MYC	0	MSKCC	GRCh37	8	128750504	128750504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	71	398	0	ENST00000377970.2:c.41C>T	p.Ala14Val	p.A14V	ENST00000377970	NM_002467.4	14	gCg/gTg																																																																														
TEK	0	MSKCC	GRCh37	9	27212815	27212815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	129	603	1	ENST00000380036.4:c.2797G>A	p.Ala933Thr	p.A933T	ENST00000380036	NM_000459.3	933	Gcg/Acg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101894950	101894950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	68	288	1	ENST00000374994.4:c.503G>A	p.Arg168His	p.R168H	ENST00000374994	NM_004612.2	168	cGc/cAc																																																																														
ABL1	0	MSKCC	GRCh37	9	133738297	133738297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	71	417	0	ENST00000318560.5:c.697G>A	p.Asp233Asn	p.D233N	ENST00000318560	NM_005157.4	233	Gac/Aac																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938456	44938456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	30	474	0	ENST00000377967.4:c.3004A>G	p.Thr1002Ala	p.T1002A	ENST00000377967	NM_021140.2	1002	Aca/Gca																																																																														
AMER1	0	MSKCC	GRCh37	X	63411330	63411330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	37	601	0	ENST00000330258.3:c.1837G>A	p.Ala613Thr	p.A613T	ENST00000330258	NM_152424.3	613	Gcc/Acc																																																																														
MED12	0	MSKCC	GRCh37	X	70351416	70351416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	44	549	0	ENST00000374080.3:c.4064C>T	p.Thr1355Ile	p.T1355I	ENST00000374080		1355	aCc/aTc																																																																														
ATRX	0	MSKCC	GRCh37	X	76777814	76777814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	43	563	0	ENST00000373344.5:c.6902G>T	p.Ser2301Ile	p.S2301I	ENST00000373344	NM_000489.3	2301	aGt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	313	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	200	561	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	179	373	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	179	373	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	179	373	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
EP300	0	MSKCC	GRCh37	22	41573203	41573205	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	181	571	0	ENST00000263253.7:c.5492_5494del	p.Arg1831del	p.R1831del	ENST00000263253	NM_001429.3	1830	AGG/-																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026132	71026132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	84	435	0	ENST00000318789.4:c.1490G>A	p.Arg497Gln	p.R497Q	ENST00000318789	NM_032682.5	497	cGa/cAa																																																																														
TRAF2	0	MSKCC	GRCh37	9	139820300	139820300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	195	613	1	ENST00000247668.2:c.1453G>A	p.Val485Met	p.V485M	ENST00000247668	NM_021138.3	485	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	254	677	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	247	395	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	247	395	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716329	52716329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	43	634	0	ENST00000322088.6:c.773G>A	p.Arg258His	p.R258H	ENST00000322088	NM_014225.5	258	cGc/cAc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118368709	118368722	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGGTCAGCGGAA	TGTGGTCAGCGGAA	-			P-0028491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	68	560	1	ENST00000534358.1:c.5723_5736del	p.Leu1908CysfsTer3	p.L1908Cfs*3	ENST00000534358	NM_005933.3	1908	tTGTGGTCAGCGGAA/t																																																																														
KDM6A	0	MSKCC	GRCh37	X	44937691	44937691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	80	355	1	ENST00000377967.4:c.2879G>T	p.Cys960Phe	p.C960F	ENST00000377967	NM_021140.2	960	tGt/tTt																																																																														
RAD54L	0	MSKCC	GRCh37	1	46739820	46739820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	165	428	0	ENST00000371975.4:c.1621G>A	p.Val541Ile	p.V541I	ENST00000371975	NM_003579.3	541	Gtc/Atc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	47	557	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	194	375	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	230	644	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	113	663	0	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																														
SETD2	0	MSKCC	GRCh37	3	47161939	47161939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	114	334	1	ENST00000409792.3:c.4187del	p.Asn1396MetfsTer16	p.N1396Mfs*16	ENST00000409792	NM_014159.6	1396	aAt/at																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32168969	32168969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	286	892	0	ENST00000375023.3:c.4064G>A	p.Arg1355Gln	p.R1355Q	ENST00000375023	NM_004557.3	1355	cGg/cAg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591135	67591136	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	104	329	0	ENST00000274335.5:c.1732_1733del	p.Asp578ProfsTer23	p.D578Pfs*23	ENST00000274335		576	acGAga/acga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	322	873	2	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
AGO2	0	MSKCC	GRCh37	8	141554341	141554341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	330	1084	0	ENST00000220592.5:c.1810G>A	p.Gly604Arg	p.G604R	ENST00000220592	NM_012154.3	604	Ggg/Agg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830421	72830421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	81	232	0	ENST00000268489.5:c.6160G>A	p.Ala2054Thr	p.A2054T	ENST00000268489	NM_006885.3	2054	Gcg/Acg																																																																														
MTOR	0	MSKCC	GRCh37	1	11272482	11272482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	71	555	0	ENST00000361445.4:c.3448G>A	p.Asp1150Asn	p.D1150N	ENST00000361445	NM_004958.3	1150	Gac/Aac																																																																														
PTEN	0	MSKCC	GRCh37	10	89653802	89653802	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	179	401	0	ENST00000371953.3:c.100del	p.Ala34LeufsTer20	p.A34Lfs*20	ENST00000371953	NM_000314.4	34	Gct/ct																																																																														
PGR	0	MSKCC	GRCh37	11	100996878	100996879	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	174	589	0	ENST00000325455.5:c.1648_1649del	p.Glu550SerfsTer23	p.E550Sfs*23	ENST00000325455	NM_001202474.3	550	GAa/a																																																																														
ARID2	0	MSKCC	GRCh37	12	46205314	46205314	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	134	479	0	ENST00000334344.6:c.398A>G	p.Tyr133Cys	p.Y133C	ENST00000334344	NM_152641.2	133	tAc/tGc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30066890	30066890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	191	572	2	ENST00000331968.5:c.2241del	p.Ala748LeufsTer8	p.A748Lfs*8	ENST00000331968	NM_002742.2	747	ccC/cc																																																																														
IDH2	0	MSKCC	GRCh37	15	90630775	90630775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	140	499	0	ENST00000330062.3:c.711G>T	p.Gln237His	p.Q237H	ENST00000330062	NM_002168.2	237	caG/caT																																																																														
TSC2	0	MSKCC	GRCh37	16	2130204	2130204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	267	822	0	ENST00000219476.3:c.3436G>A	p.Ala1146Thr	p.A1146T	ENST00000219476	NM_000548.3	1146	Gcc/Acc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821812	72821812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	174	654	0	ENST00000268489.5:c.10363C>A	p.Pro3455Thr	p.P3455T	ENST00000268489	NM_006885.3	3455	Ccc/Acc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828675	72828677	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	181	654	1	ENST00000268489.5:c.7904_7906delGAG	p.Gly2635del	p.G2635del	ENST00000268489	NM_006885.3	2635	gGAGaa/gaa																																																																														
NF1	0	MSKCC	GRCh37	17	29586144	29586144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	136	536	3	ENST00000358273.4:c.4427G>A	p.Arg1476His	p.R1476H	ENST00000358273	NM_001042492.2	1476	cGc/cAc																																																																														
NF1	0	MSKCC	GRCh37	17	29654716	29654716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	128	354	0	ENST00000358273.4:c.5468C>T	p.Ser1823Phe	p.S1823F	ENST00000358273	NM_001042492.2	1823	tCt/tTt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533117	63533117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	202	544	0	ENST00000307078.5:c.1777C>G	p.Pro593Ala	p.P593A	ENST00000307078	NM_004655.3	593	Ccc/Gcc																																																																														
INSR	3643	MSKCC	GRCh37	19	7117191	7117191	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	175	616	1	ENST00000302850.5:c.4025del	p.Gly1342AlafsTer23	p.G1342Afs*23	ENST00000302850	NM_000208.2	1342	gGc/gc																																																																														
CIC	0	MSKCC	GRCh37	19	42791326	42791326	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	227	747	0	ENST00000575354.2:c.386A>C	p.Glu129Ala	p.E129A	ENST00000575354	NM_015125.3	129	gAg/gCg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267335	198267337	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	152	510	0	ENST00000335508.6:c.2020_2022del	p.Leu674del	p.L674del	ENST00000335508	NM_012433.2	674	CTT/-																																																																														
IRS1	0	MSKCC	GRCh37	2	227663423	227663423	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	97	304	0	ENST00000305123.5:c.32C>A	p.Ser11Ter	p.S11*	ENST00000305123	NM_005544.2	11	tCg/tAg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31372648	31372648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	238	586	0	ENST00000328111.2:c.289C>T	p.Arg97Cys	p.R97C	ENST00000328111	NM_006892.3	97	Cgt/Tgt																																																																														
BCL6	0	MSKCC	GRCh37	3	187446252	187446252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	219	755	0	ENST00000232014.4:c.1436G>A	p.Gly479Asp	p.G479D	ENST00000232014	NM_001130845.1	479	gGc/gAc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177987	56177987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	102	409	0	ENST00000399503.3:c.2960C>G	p.Ser987Cys	p.S987C	ENST00000399503	NM_005921.1	987	tCt/tGt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591279	67591279	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	199	424	0	ENST00000274335.5:c.1778del	p.Lys593SerfsTer2	p.K593Sfs*2	ENST00000274335		593	Aag/ag																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911212	29911212	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	29	210	0	ENST00000376809.5:c.511T>C	p.Trp171Arg	p.W171R	ENST00000376809	NM_002116.7	171	Tgg/Cgg																																																																														
ESR1	0	MSKCC	GRCh37	6	152163752	152163752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	139	475	0	ENST00000206249.3:c.473G>A	p.Arg158His	p.R158H	ENST00000206249	NM_000125.3	158	cGc/cAc																																																																														
MYC	0	MSKCC	GRCh37	8	128752907	128752907	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	90	393	0	ENST00000377970.2:c.1068A>C	p.Lys356Asn	p.K356N	ENST00000377970	NM_002467.4	356	aaA/aaC																																																																														
EGFL7	0	MSKCC	GRCh37	9	139564648	139564650	+	frameshift_variant	Frame_Shift_Del	DEL	GCG	GCG	AA			P-0028495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	269	991	6	ENST00000308874.7:c.437_439delinsAA	p.Gly146GlufsTer51	p.G146Efs*51	ENST00000308874		146	gGCGgc/gAAgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	35	498	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	73	755	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	43	425	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
SHQ1	0	MSKCC	GRCh37	3	72842185	72842185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	32	325	0	ENST00000325599.8:c.1063A>G	p.Lys355Glu	p.K355E	ENST00000325599	NM_018130.2	355	Aaa/Gaa																																																																														
WT1	0	MSKCC	GRCh37	11	32417814	32417814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	36	445	0	ENST00000332351.3:c.1238G>T	p.Arg413Met	p.R413M	ENST00000332351	NM_024426.4	413	aGg/aTg																																																																														
KDM5A	0	MSKCC	GRCh37	12	438196	438196	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	31	323	0	ENST00000399788.2:c.1774-1G>T		p.X592_splice	ENST00000399788	NM_001042603.1	592																																																																															
NKX2-1	0	MSKCC	GRCh37	14	36988535	36989088	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTCGTGTGCTTTGGACTCATCGACATGATTCGGCGGCGGCTGGAGGAGGAAGGAAGAGGAGGAAAAAAAAGGGAGAGGGGGAAGGCGAAGCCTCGCTGCTTTTTTTTTCTCCCTTTGCCAAATATTCTGGTGTTACCTTAACGCCGATCTTGTTGGATGTACACGTAACGGAGTGGACCGAGTCCTCCTTAATTGGCTTGAGTGGAGGCTCGGGGGCTGCCTCGCGTTTGTTTTAGCCCGGCGCCAGGTTTTAGGCAGCCACCAGAGGCGGGGCGTAAGCGCTAAAGCAACAAGACAATAGAAGCCTACATCTTGCCCGAGATAATTAGCTTACATGCTGATGACAAGGTAAACACCTTTAAGTTTCACTTGTCAGGATTTTTAGGTCTCAAAGAGAGAGAGAGAGAGGCAGAGACGAGACCCAAAGCATTTCCCCCCTCCCTTGGACACCCCCACCCCCATTTTTTGTGGGGTACCAGCGGAGCGCGGGGAGGAGGTGGAGGGGAGGGGAAGGAGGAGGGAACCGAGAGCGGGGAGGGCAGGAGGTGGGGT	GAGTCGTGTGCTTTGGACTCATCGACATGATTCGGCGGCGGCTGGAGGAGGAAGGAAGAGGAGGAAAAAAAAGGGAGAGGGGGAAGGCGAAGCCTCGCTGCTTTTTTTTTCTCCCTTTGCCAAATATTCTGGTGTTACCTTAACGCCGATCTTGTTGGATGTACACGTAACGGAGTGGACCGAGTCCTCCTTAATTGGCTTGAGTGGAGGCTCGGGGGCTGCCTCGCGTTTGTTTTAGCCCGGCGCCAGGTTTTAGGCAGCCACCAGAGGCGGGGCGTAAGCGCTAAAGCAACAAGACAATAGAAGCCTACATCTTGCCCGAGATAATTAGCTTACATGCTGATGACAAGGTAAACACCTTTAAGTTTCACTTGTCAGGATTTTTAGGTCTCAAAGAGAGAGAGAGAGAGGCAGAGACGAGACCCAAAGCATTTCCCCCCTCCCTTGGACACCCCCACCCCCATTTTTTGTGGGGTACCAGCGGAGCGCGGGGAGGAGGTGGAGGGGAGGGGAAGGAGGAGGGAACCGAGAGCGGGGAGGGCAGGAGGTGGGGT	-			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	67	918	0	ENST00000354822.5:c.77+170_118del		p.X26_splice	ENST00000354822	NM_001079668.2	26																																																																															
MGA	0	MSKCC	GRCh37	15	42042112	42042112	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	61	609	1	ENST00000219905.7:c.6307A>T	p.Lys2103Ter	p.K2103*	ENST00000219905	NM_001164273.1	2103	Aaa/Taa																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138198303	138198303	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	37	348	0	ENST00000237289.4:c.896A>T	p.Lys299Met	p.K299M	ENST00000237289	NM_001270507.1	299	aAg/aTg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32905157	32905157	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	174	578	0	ENST00000380152.3:c.783del	p.Ala262GlnfsTer15	p.A262Qfs*15	ENST00000380152		261	gcT/gc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143033724	143033740	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAACATTAAAAAGTA	TCCAACATTAAAAAGTA	ACACAGCATG			P-0028500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	55	547	1	ENST00000262992.4:c.2231_2247delinsCATGCTGTGT	p.Val744AlafsTer57	p.V744Afs*57	ENST00000262992	NM_001101669.1	744	gTACTTTTTAATGTTGGA/gCATGCTGTGT																																																																														
XRCC2	0	MSKCC	GRCh37	7	152345784	152345802	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTTTTAAACAACGTGAA	ACTTTTTAAACAACGTGAA	-			P-0028500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	65	407	0	ENST00000359321.1:c.768_786del	p.Ser257ThrfsTer3	p.S257Tfs*3	ENST00000359321	NM_005431.1	256	gtTTCACGTTGTTTAAAAAGT/gt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	129	576	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
MAPK1	0	MSKCC	GRCh37	22	22221708	22221709	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCG			P-0028502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	14	73	1	ENST00000215832.6:c.20_22dupCGG	p.Ala7dup	p.A7dup	ENST00000215832	NM_002745.4	7	ggc/gCGGgc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060937	38060937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	93	406	3	ENST00000250448.2:c.1052C>A	p.Thr351Asn	p.T351N	ENST00000250448	NM_004496.3	351	aCt/aAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39932807	39932807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	174	609	1	ENST00000378444.4:c.1792G>A	p.Val598Met	p.V598M	ENST00000378444	NM_001123385.1	598	Gtg/Atg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	108	509	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	91	390	0				ENST00000310581	NM_198253.2																																																																																
CDC73	0	MSKCC	GRCh37	1	193104712	193104712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	12	321	0	ENST00000367435.3:c.416G>A	p.Arg139Gln	p.R139Q	ENST00000367435	NM_024529.4	139	cGa/cAa																																																																														
DIS3	0	MSKCC	GRCh37	13	73346364	73346364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	37	470	0	ENST00000377767.4:c.1436A>G	p.Asp479Gly	p.D479G	ENST00000377767	NM_014953.3	479	gAc/gGc																																																																														
TRAF2	0	MSKCC	GRCh37	9	139814930	139814930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014689-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	26	640	0	ENST00000247668.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000247668	NM_021138.3	308	cGg/cAg																																																																														
KIT	0	MSKCC	GRCh37	4	55593602	55593613	+	inframe_deletion	In_Frame_Del	DEL	GTGGAAGGTTGT	GTGGAAGGTTGT	-			P-0016532-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	127	371	0	ENST00000288135.5:c.1668_1679del	p.Gln556_Val560delinsHis	p.Q556_V560delinsH	ENST00000288135	NM_000222.2	556	caGTGGAAGGTTGTt/cat																																																																														
CDC42	0	MSKCC	GRCh37	1	22412959	22412959	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016532-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			62	53	108	0	ENST00000344548.3:c.206C>G	p.Pro69Arg	p.P69R	ENST00000344548	NM_001039802.1	69	cCg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	217	613	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			663	365	677	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0016873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			70	25	42	2	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347546	89347546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			759	134	618	1	ENST00000301030.4:c.5404G>A	p.Glu1802Lys	p.E1802K	ENST00000301030	NM_001256183.1	1802	Gaa/Aaa																																																																														
WT1	0	MSKCC	GRCh37	11	32414297	32414297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	197	502	0	ENST00000332351.3:c.1254G>C	p.Glu418Asp	p.E418D	ENST00000332351	NM_024426.4	418	gaG/gaC																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907119	32907120	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0016873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	300	482	0	ENST00000380152.3:c.1507_1508del	p.Lys503ValfsTer10	p.K503Vfs*10	ENST00000380152		502	AAa/a																																																																														
EPAS1	0	MSKCC	GRCh37	2	46603751	46603751	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016873-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			829	323	744	0	ENST00000263734.3:c.1108A>G	p.Met370Val	p.M370V	ENST00000263734	NM_001430.4	370	Atg/Gtg																																																																														
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0017565-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			94	240	333	1	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7976198	7976198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017565-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			72	339	375	0	ENST00000319144.4:c.1997G>A	p.Arg666His	p.R666H	ENST00000319144	NM_001139.2	666	cGc/cAc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713463	30713536	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAGCAGAACACTTCAGAGCAGTTTGAGACAGTGGCAGTCAAGATCTTTCCCTATGAGGAGTATGCCTCTTGG	TGAAGCAGAACACTTCAGAGCAGTTTGAGACAGTGGCAGTCAAGATCTTTCCCTATGAGGAGTATGCCTCTTGG	-			P-0017565-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			89	222	373	1	ENST00000359013.4:c.863_936del	p.Leu288GlnfsTer15	p.L288Qfs*15	ENST00000359013	NM_001024847.2	288	cTGAAGCAGAACACTTCAGAGCAGTTTGAGACAGTGGCAGTCAAGATCTTTCCCTATGAGGAGTATGCCTCTTGG/c																																																																														
APC	324	MSKCC	GRCh37	5	112162945	112162945	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017565-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			51	166	267	0	ENST00000257430.4:c.1548+1G>A		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																															
CYLD	0	MSKCC	GRCh37	16	50783720	50783720	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017565-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1627	350	457	0	ENST00000398568.2:c.111G>C	p.Lys37Asn	p.K37N	ENST00000398568	NM_001042412.1	37	aaG/aaC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027087-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			706	19	508	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578383	7578384	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027087-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			509	35	406	0	ENST00000269305.4:c.546dup	p.Ser183LeufsTer3	p.S183Lfs*3	ENST00000269305	NM_001126112.2	182	-/C																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0027119-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			194	282	206	0				ENST00000310581	NM_198253.2																																																																																
DIS3	0	MSKCC	GRCh37	13	73355839	73355839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	107	529	0	ENST00000377767.4:c.132G>T	p.Glu44Asp	p.E44D	ENST00000377767	NM_014953.3	44	gaG/gaT																																																																														
TP53	0	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	363	659	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983728	15983728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	232	431	0	ENST00000268712.3:c.3394G>A	p.Val1132Ile	p.V1132I	ENST00000268712	NM_006311.3	1132	Gtc/Atc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71949102	71949114	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGGCGGGCCAG	GCGGGCGGGCCAG	AA			P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	126	593	4	ENST00000298229.2:c.3569_3581delinsAA	p.Gly1190GlufsTer21	p.G1190Efs*21	ENST00000298229	NM_001567.3	1190	gGCGGGCGGGCCAGc/gAAc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81971495	81971495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	183	526	0	ENST00000359376.3:c.3185C>T	p.Thr1062Met	p.T1062M	ENST00000359376	NM_002661.3	1062	aCg/aTg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67576810	67576863	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGAATGAACGACAGCCTGCACCAGGTAATGCTTTTTGAGCATTTAACATTCTC	TGGAATGAACGACAGCCTGCACCAGGTAATGCTTTTTGAGCATTTAACATTCTC	-			P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	54	369	0	ENST00000274335.5:c.893_916+30del		p.X298_splice	ENST00000274335		298																																																																															
MET	0	MSKCC	GRCh37	7	116397803	116397803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	81	514	0	ENST00000397752.3:c.2077G>C	p.Gly693Arg	p.G693R	ENST00000397752	NM_000245.2	693	Ggt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	11	446	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	147	505	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	79	255	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	111	398	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
PTEN	0	MSKCC	GRCh37	10	89720753	89720768	+	frameshift_variant	Frame_Shift_Del	DEL	AGCATTTGCAGTATAG	AGCATTTGCAGTATAG	-			P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	10	182	0	ENST00000371953.3:c.907_922del	p.Ile303ValfsTer9	p.I303Vfs*9	ENST00000371953	NM_000314.4	302	AGCATTTGCAGTATAGag/ag																																																																														
IGF1R	0	MSKCC	GRCh37	15	99465398	99465398	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	26	464	0	ENST00000268035.6:c.2223del	p.Asp741GlufsTer98	p.D741Efs*98	ENST00000268035	NM_000875.3	741	gaT/ga																																																																														
MALT1	0	MSKCC	GRCh37	18	56414947	56414947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	134	575	0	ENST00000348428.3:c.2348C>T	p.Pro783Leu	p.P783L	ENST00000348428	NM_006785.3	783	cCa/cTa																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519406	137519406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	73	247	0	ENST00000367739.4:c.1232G>A	p.Gly411Asp	p.G411D	ENST00000367739	NM_000416.2	411	gGt/gAt																																																																														
RB1	0	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	116	246	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga																																																																														
RAD51B	0	MSKCC	GRCh37	14	68301903	68301903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	140	476	0	ENST00000487270.1:c.305C>T	p.Ser102Phe	p.S102F	ENST00000487270	NM_133509.3	102	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7579406	7579409	+	frameshift_variant	Frame_Shift_Del	DEL	GACA	GACA	-			P-0028305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	346	552	1	ENST00000269305.4:c.278_281del	p.Leu93HisfsTer29	p.L93Hfs*29	ENST00000269305	NM_001126112.2	93	cTGTCa/ca																																																																														
AMER1	0	MSKCC	GRCh37	X	63410217	63410217	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	316	524	0	ENST00000330258.3:c.2950T>C	p.Ser984Pro	p.S984P	ENST00000330258	NM_152424.3	984	Tcc/Ccc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0028306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	11	182	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
TET2	0	MSKCC	GRCh37	4	106197362	106197362	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	78	364	0	ENST00000380013.4:c.5695C>G	p.Leu1899Val	p.L1899V	ENST00000380013	NM_001127208.2	1899	Ctc/Gtc																																																																														
CIC	0	MSKCC	GRCh37	19	42798882	42798882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	218	618	0	ENST00000575354.2:c.4454C>T	p.Pro1485Leu	p.P1485L	ENST00000575354	NM_015125.3	1485	cCg/cTg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911618	134911618	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	179	459	0	ENST00000398015.3:c.2083A>T	p.Ile695Phe	p.I695F	ENST00000398015	NM_004441.4	695	Atc/Ttc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921374	178921374	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	93	649	0	ENST00000263967.3:c.856A>C	p.Met286Leu	p.M286L	ENST00000263967	NM_006218.2	286	Atg/Ctg																																																																														
KLF4	0	MSKCC	GRCh37	9	110248166	110248166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	53	435	0	ENST00000374672.4:c.1306A>G	p.Lys436Glu	p.K436E	ENST00000374672	NM_004235.4	436	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	482	637	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
MGA	0	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	242	506	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																														
CIC	0	MSKCC	GRCh37	19	42795279	42795280	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0028308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	191	555	2	ENST00000575354.2:c.2359_2360delinsCT	p.Gly787Leu	p.G787L	ENST00000575354	NM_015125.3	787	GGt/CTt																																																																														
SETD2	0	MSKCC	GRCh37	3	47165977	47165977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	270	540	0	ENST00000409792.3:c.149C>T	p.Ala50Val	p.A50V	ENST00000409792	NM_014159.6	50	gCt/gTt																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191373	185191373	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	228	689	0	ENST00000265026.3:c.2254G>C	p.Gly752Arg	p.G752R	ENST00000265026	NM_004721.4	752	Ggg/Cgg																																																																														
EGFR	0	MSKCC	GRCh37	7	55229252	55229266	+	inframe_deletion	In_Frame_Del	DEL	CCAGGGACTGCGTCT	CCAGGGACTGCGTCT	-			P-0028308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	231	546	0	ENST00000275493.2:c.1560_1574del	p.Arg521_Ser525del	p.R521_S525del	ENST00000275493	NM_005228.3	520	cCCAGGGACTGCGTCTct/cct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	617	600	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	167	324	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	167	324	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	167	324	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	646	633	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134968250	134968250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	100	650	1	ENST00000398015.3:c.2763C>A	p.Ser921Arg	p.S921R	ENST00000398015	NM_004441.4	921	agC/agA																																																																														
AGO2	0	MSKCC	GRCh37	8	141572709	141572709	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	418	499	0	ENST00000220592.5:c.361G>T	p.Gly121Ter	p.G121*	ENST00000220592	NM_012154.3	121	Gga/Tga																																																																														
JAK1	0	MSKCC	GRCh37	1	65323350	65323350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	221	556	0	ENST00000342505.4:c.1447G>A	p.Glu483Lys	p.E483K	ENST00000342505	NM_002227.2	483	Gag/Aag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120468328	120468328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	272	567	0	ENST00000256646.2:c.4111C>T	p.Pro1371Ser	p.P1371S	ENST00000256646	NM_024408.3	1371	Ccc/Tcc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741830	17741830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	100	213	0	ENST00000250003.3:c.501G>T	p.Gln167His	p.Q167H	ENST00000250003	NM_002478.4	167	caG/caT																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67198983	67198983	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	108	426	0	ENST00000312629.5:c.454A>T	p.Ser152Cys	p.S152C	ENST00000312629	NM_003952.2	152	Agt/Tgt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118307630	118307631	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	142	418	0	ENST00000534358.1:c.406_407del	p.Ser136ArgfsTer10	p.S136Rfs*10	ENST00000534358	NM_005933.3	135	GAg/g																																																																														
MGA	0	MSKCC	GRCh37	15	42034911	42034911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	536	552	0	ENST00000219905.7:c.4753G>T	p.Glu1585Ter	p.E1585*	ENST00000219905	NM_001164273.1	1585	Gag/Tag																																																																														
PDPK1	0	MSKCC	GRCh37	16	2645846	2645846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	57	568	0	ENST00000342085.4:c.1396C>T	p.Arg466Trp	p.R466W	ENST00000342085	NM_002613.4	466	Cgg/Tgg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222242	2222243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	517	764	0	ENST00000398665.3:c.3077dup	p.Asp1027ArgfsTer12	p.D1027Rfs*12	ENST00000398665	NM_032482.2	1025	aag/aaGg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023558	31023558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	212	572	0	ENST00000375687.4:c.3043G>A	p.Glu1015Lys	p.E1015K	ENST00000375687	NM_015338.5	1015	Gag/Aag																																																																														
MDC1	0	MSKCC	GRCh37	6	30675418	30675418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	147	519	0	ENST00000376406.3:c.2938A>G	p.Thr980Ala	p.T980A	ENST00000376406	NM_014641.2	980	Acc/Gcc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323172	31323172	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	78	657	0	ENST00000412585.2:c.817G>C	p.Val273Leu	p.V273L	ENST00000412585	NM_005514.6	273	Gtg/Ctg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32168682	32168682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	223	699	0	ENST00000375023.3:c.4241C>A	p.Ala1414Glu	p.A1414E	ENST00000375023	NM_004557.3	1414	gCg/gAg																																																																														
PARK2	0	MSKCC	GRCh37	6	162206887	162206887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	227	579	0	ENST00000366898.1:c.788G>T	p.Cys263Phe	p.C263F	ENST00000366898	NM_004562.2	263	tGt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	353	617	0	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																														
RRAGC	0	MSKCC	GRCh37	1	39325206	39325206	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	397	382	0	ENST00000373001.3:c.113C>G	p.Ala38Gly	p.A38G	ENST00000373001	NM_022157.3	38	gCg/gGg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49428387	49428425	+	inframe_deletion	In_Frame_Del	DEL	TGGTTCTGCAGATCACTGCTAGGTCCCCCCGAGAGCCTC	TGGTTCTGCAGATCACTGCTAGGTCCCCCCGAGAGCCTC	-			P-0028327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	772	533	0	ENST00000301067.7:c.10380_10418del	p.Gln3460_Asn3472del	p.Q3460_N3472del	ENST00000301067	NM_003482.3	3460	caGAGGCTCTCGGGGGGACCTAGCAGTGATCTGCAGAACCAt/cat																																																																														
RB1	0	MSKCC	GRCh37	13	48954368	48954374	+	frameshift_variant	Frame_Shift_Del	DEL	ACATATA	ACATATA	-			P-0028327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	126	366	0	ENST00000267163.4:c.1489_1495del	p.Thr497AlafsTer20	p.T497Afs*20	ENST00000267163	NM_000321.2	497	ACATATAgc/gc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526475	31526475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2204	373	731	0	ENST00000344624.3:c.565C>T	p.Pro189Ser	p.P189S	ENST00000344624		189	Cct/Tct																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367288	50367288	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	204	382	1	ENST00000331340.3:c.95C>G	p.Pro32Arg	p.P32R	ENST00000331340	NM_006060.4	32	cCg/cGg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	35	351	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
MTOR	0	MSKCC	GRCh37	1	11186791	11186791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	59	322	0	ENST00000361445.4:c.6414G>T	p.Leu2138Phe	p.L2138F	ENST00000361445	NM_004958.3	2138	ttG/ttT																																																																														
TSC2	0	MSKCC	GRCh37	16	2106747	2106747	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	40	393	0	ENST00000219476.3:c.751G>T	p.Glu251Ter	p.E251*	ENST00000219476	NM_000548.3	251	Gag/Tag																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0028342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	179	409	2	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191055	185191055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	140	449	2	ENST00000265026.3:c.1936C>T	p.Pro646Ser	p.P646S	ENST00000265026	NM_004721.4	646	Cct/Tct																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271254	26271254	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	83	347	0	ENST00000305910.3:c.359T>G	p.Ile120Ser	p.I120S	ENST00000305910	NM_003534.2	120	aTc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	598	451	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	264	412	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
APC	0	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	175	369	1	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	161	301	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	66	324	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	70	426	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	55	475	1	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg																																																																														
SOX17	0	MSKCC	GRCh37	8	55372184	55372184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	20	153	0	ENST00000297316.4:c.874G>A	p.Ala292Thr	p.A292T	ENST00000297316	NM_022454.3	292	Gcc/Acc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	67	397	2	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936393		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	138	310	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																														
CDK12	0	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	97	338	0	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																														
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	37	380	1	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																														
RAD54L	0	MSKCC	GRCh37	1	46743520	46743520	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141523334		P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	93	398	0	ENST00000371975.4:c.1901G>A	p.Arg634His	p.R634H	ENST00000371975	NM_003579.3	634	cGt/cAt																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186503787	186503789	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	54	435	0	ENST00000323963.5:c.470_472del	p.Val157del	p.V157del	ENST00000323963		155	aTTGtt/att																																																																														
BRD4	0	MSKCC	GRCh37	19	15366389	15366389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	53	282	3	ENST00000263377.2:c.1766C>T	p.Ala589Val	p.A589V	ENST00000263377	NM_058243.2	589	gCg/gTg																																																																														
BCOR	0	MSKCC	GRCh37	X	39911630	39911630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	77	204	0	ENST00000378444.4:c.5000C>T	p.Ser1667Leu	p.S1667L	ENST00000378444	NM_001123385.1	1667	tCg/tTg																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515045	103515045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	34	294	0	ENST00000355739.4:c.1546C>T	p.Leu516Phe	p.L516F	ENST00000355739	NM_000123.3	516	Ctc/Ttc																																																																														
TSHR	0	MSKCC	GRCh37	14	81609856	81609856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	101	290	1	ENST00000298171.2:c.1454C>T	p.Ala485Val	p.A485V	ENST00000298171	NM_000369.2	485	gCc/gTc																																																																														
MGA	0	MSKCC	GRCh37	15	42021525	42021525	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	66	488	0	ENST00000219905.7:c.3821C>A	p.Pro1274His	p.P1274H	ENST00000219905	NM_001164273.1	1274	cCt/cAt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43712782	43712783	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	85	492	0	ENST00000382044.4:c.4401_4402del	p.Pro1468ArgfsTer12	p.P1468Rfs*12	ENST00000382044	NM_001141980.1	1467	tcTCca/tcca																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43733754	43733754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	33	385	0	ENST00000382044.4:c.3068G>T	p.Gly1023Val	p.G1023V	ENST00000382044	NM_001141980.1	1023	gGa/gTa																																																																														
GPS2	0	MSKCC	GRCh37	17	7217409	7217411	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	81	376	0	ENST00000380728.2:c.385_387del	p.Leu129del	p.L129del	ENST00000380728		129	CTC/-																																																																														
RPTOR	0	MSKCC	GRCh37	17	78858812	78858812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	45	381	1	ENST00000306801.3:c.1847G>A	p.Arg616His	p.R616H	ENST00000306801	NM_020761.2	616	cGc/cAc																																																																														
BRD4	0	MSKCC	GRCh37	19	15367902	15367902	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	78	457	1	ENST00000263377.2:c.1424del	p.Pro475LeufsTer109	p.P475Lfs*109	ENST00000263377	NM_058243.2	475	cCt/ct																																																																														
CENPA	0	MSKCC	GRCh37	2	27009126	27009138	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGACCCCCGG	CCCCGACCCCCGG	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	61	125	0	ENST00000335756.4:c.66_78del	p.Thr23ProfsTer7	p.T23Pfs*7	ENST00000335756	NM_001809.3	21	aCCCCGACCCCCGGc/ac																																																																														
INPP4A	0	MSKCC	GRCh37	2	99181112	99181112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	237	453	0	ENST00000074304.5:c.2053C>A	p.Leu685Ile	p.L685I	ENST00000074304	NM_001134224.1	685	Ctc/Atc																																																																														
BARD1	0	MSKCC	GRCh37	2	215634033	215634033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	23	365	1	ENST00000260947.4:c.1318G>A	p.Asp440Asn	p.D440N	ENST00000260947	NM_000465.2	440	Gac/Aac																																																																														
NCOA3	0	MSKCC	GRCh37	20	46281315	46281315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	60	249	0	ENST00000371998.3:c.4112C>T	p.Ala1371Val	p.A1371V	ENST00000371998		1371	gCc/gTc																																																																														
U2AF1	0	MSKCC	GRCh37	21	44524474	44524474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	52	280	0	ENST00000291552.4:c.83G>A	p.Arg28His	p.R28H	ENST00000291552	NM_006758.2	28	cGt/cAt																																																																														
NSD1	0	MSKCC	GRCh37	5	176707779	176707779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	192	401	0	ENST00000439151.2:c.5836A>G	p.Ile1946Val	p.I1946V	ENST00000439151	NM_022455.4	1946	Att/Gtt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205092	38205092	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	58	485	1	ENST00000317025.8:c.598del	p.Ser200AlafsTer20	p.S200Afs*20	ENST00000317025	NM_023034.1	200	Agc/gc																																																																														
PREX2	0	MSKCC	GRCh37	8	68864745	68864745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	38	268	0	ENST00000288368.4:c.116T>C	p.Val39Ala	p.V39A	ENST00000288368	NM_024870.2	39	gTg/gCg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222486	53222486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	461	236	0	ENST00000375401.3:c.4346G>A	p.Arg1449Gln	p.R1449Q	ENST00000375401	NM_004187.3	1449	cGg/cAg																																																																														
CDK12	0	MSKCC	GRCh37	17	37673809	37673823	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTGAGTTTGGGGAA	TGTGAGTTTGGGGAA	G			P-0028344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	181	466	0	ENST00000447079.4:c.2963_2963+14delinsG		p.X988_splice	ENST00000447079	NM_015083.1	988																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	30	390	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0028346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	37	387	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944273	81944273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	85	528	1	ENST00000359376.3:c.1882G>A	p.Glu628Lys	p.E628K	ENST00000359376	NM_002661.3	628	Gag/Aag																																																																														
MUTYH	0	MSKCC	GRCh37	1	45796189	45796189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0028348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	127	518	0	ENST00000372115.3:c.1475T>A	p.Met492Lys	p.M492K	ENST00000372115	NM_001048171.1	492	aTg/aAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577119	7577119	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	125	540	0	ENST00000269305.4:c.819del	p.Val274PhefsTer71	p.V274Ffs*71	ENST00000269305	NM_001126112.2	273	cgT/cg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10251471	10251471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	37	478	0	ENST00000340748.4:c.3461G>T	p.Gly1154Val	p.G1154V	ENST00000340748		1154	gGa/gTa																																																																														
CALR	0	MSKCC	GRCh37	19	13054397	13054397	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	51	491	0	ENST00000316448.5:c.1007A>C	p.Glu336Ala	p.E336A	ENST00000316448	NM_004343.3	336	gAg/gCg																																																																														
NRAS	0	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	97	687	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	88	512	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	0	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	64	413	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578510	7578510	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	174	645	0	ENST00000269305.4:c.420del	p.Cys141AlafsTer29	p.C141Afs*29	ENST00000269305	NM_001126112.2	140	acC/ac																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114724358	114724358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200865074		P-0028356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	72	479	1	ENST00000543371.1:c.425C>T	p.Thr142Met	p.T142M	ENST00000543371	NM_001198531.1	142	aCg/aTg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114917829	114917829	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0028356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	115	544	0	ENST00000543371.1:c.1318+1G>A		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																															
NCOA3	0	MSKCC	GRCh37	20	46267927	46267927	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	36	513	0	ENST00000371998.3:c.2688A>C	p.Glu896Asp	p.E896D	ENST00000371998		896	gaA/gaC																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249381	153249381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	55	505	1	ENST00000281708.4:c.1397G>T	p.Cys466Phe	p.C466F	ENST00000281708	NM_033632.3	466	tGt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	331	496	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600378	10600378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	748	576	0	ENST00000171111.5:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000171111	NM_203500.1	493	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106154	27106154	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	246	424	0	ENST00000324856.7:c.5765T>G	p.Leu1922Trp	p.L1922W	ENST00000324856	NM_006015.4	1922	tTg/tGg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106178	27106178	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	246	414	0	ENST00000324856.7:c.5789C>A	p.Ser1930Ter	p.S1930*	ENST00000324856	NM_006015.4	1930	tCa/tAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107204	27107204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	228	334	0	ENST00000324856.7:c.6815C>T	p.Ser2272Leu	p.S2272L	ENST00000324856	NM_006015.4	2272	tCa/tTa																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932254	36932254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	133	484	0	ENST00000361632.4:c.2215C>A	p.Gln739Lys	p.Q739K	ENST00000361632		739	Cag/Aag																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138417916	138417916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	176	344	0	ENST00000289153.2:c.1603C>T	p.Leu535Phe	p.L535F	ENST00000289153	NM_006219.2	535	Ctt/Ttt																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	203	517	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0028405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	111	341	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0028405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	34	247	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
ROS1	0	MSKCC	GRCh37	6	117622205	117622205	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	98	317	1	ENST00000368508.3:c.6665del	p.Phe2222SerfsTer2	p.F2222Sfs*2	ENST00000368508	NM_002944.2	2222	tTc/tc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714391	40714391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	327	419	0	ENST00000373198.4:c.4006T>C	p.Phe1336Leu	p.F1336L	ENST00000373198	NM_133170.3	1336	Ttc/Ctc																																																																														
AMER1	0	MSKCC	GRCh37	X	63409866	63409866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	60	337	0	ENST00000330258.3:c.3301C>A	p.His1101Asn	p.H1101N	ENST00000330258	NM_152424.3	1101	Cac/Aac																																																																														
NF2	0	MSKCC	GRCh37	22	30038257	30038258	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0028409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	211	324	0	ENST00000338641.4:c.431dupA	p.Tyr144Ter	p.Y144*	ENST00000338641	NM_000268.3	144	tac/tAac																																																																														
TRAF7	0	MSKCC	GRCh37	16	2225938	2225938	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	294	580	0	ENST00000326181.6:c.1730A>C	p.Tyr577Ser	p.Y577S	ENST00000326181	NM_032271.2	577	tAc/tCc																																																																														
INSR	0	MSKCC	GRCh37	19	7267722	7267722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	352	574	0	ENST00000302850.5:c.286C>T	p.Leu96Phe	p.L96F	ENST00000302850	NM_000208.2	96	Ctc/Ttc																																																																														
GSK3B	0	MSKCC	GRCh37	3	119582319	119582319	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	175	310	0	ENST00000316626.5:c.1082T>G	p.Val361Gly	p.V361G	ENST00000316626		361	gTc/gGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	1216	318	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	262	582	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123243237	123243237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55774317		P-0028410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	107	716	0	ENST00000358487.5:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000358487	NM_000141.4	759	cGa/cAa																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867349	45867349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	79	602	1	ENST00000391945.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000391945	NM_000400.3	282	Cgg/Tgg																																																																														
JAK1	0	MSKCC	GRCh37	1	65313343	65313343	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	153	373	0	ENST00000342505.4:c.1771A>T	p.Arg591Ter	p.R591*	ENST00000342505	NM_002227.2	591	Aga/Tga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857950	9857950	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	89	529	0	ENST00000330684.3:c.3451T>A	p.Tyr1151Asn	p.Y1151N	ENST00000330684	NM_001134407.1	1151	Tac/Aac																																																																														
INSR	0	MSKCC	GRCh37	19	7166356	7166356	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	61	611	0	ENST00000302850.5:c.1670C>G	p.Thr557Arg	p.T557R	ENST00000302850	NM_000208.2	557	aCg/aGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	65	336	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1220649	1220649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	58	539	1	ENST00000326873.7:c.667G>A	p.Glu223Lys	p.E223K	ENST00000326873	NM_000455.4	223	Gag/Aag																																																																														
ARID2	0	MSKCC	GRCh37	12	46211569	46211570	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	40	233	0	ENST00000334344.6:c.536dup	p.Cys180MetfsTer7	p.C180Mfs*7	ENST00000334344	NM_152641.2	179	gta/gTta																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426298	49426298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	83	600	0	ENST00000301067.7:c.12190G>A	p.Glu4064Lys	p.E4064K	ENST00000301067	NM_003482.3	4064	Gag/Aag																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987091	36987091	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	125	436	1	ENST00000354822.5:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000354822	NM_001079668.2	200	Cag/Tag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509583	106509583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	51	349	0	ENST00000359195.3:c.1577C>A	p.Pro526Gln	p.P526Q	ENST00000359195	NM_002649.2	526	cCg/cAg																																																																														
PAX5	0	MSKCC	GRCh37	9	37015069	37015069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	46	374	0	ENST00000358127.4:c.335G>T	p.Trp112Leu	p.W112L	ENST00000358127	NM_001280556.1	112	tGg/tTg																																																																														
PAX5	0	MSKCC	GRCh37	9	37020768	37020769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	277	495	0	ENST00000358127.4:c.76dupG	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gtt/gGtt																																																																														
KIT	0	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013114-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	251	494	0	ENST00000288135.5:c.2466T>G	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaG																																																																														
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013114-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	218	486	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870896	12870896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013114-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			43	317	290	0	ENST00000228872.4:c.124del	p.Thr42ProfsTer29	p.T42Pfs*29	ENST00000228872	NM_004064.3	41	ttA/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026258-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	180	596	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041621	14041621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026258-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	151	557	0	ENST00000311895.7:c.2168G>A	p.Cys723Tyr	p.C723Y	ENST00000311895	NM_005236.2	723	tGc/tAc																																																																														
RAF1	0	MSKCC	GRCh37	3	12626468	12626468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026258-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	129	455	0	ENST00000251849.4:c.1681G>A	p.Val561Met	p.V561M	ENST00000251849	NM_002880.3	561	Gtg/Atg																																																																														
BTK	0	MSKCC	GRCh37	X	100630212	100630212	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	77	320	0	ENST00000308731.7:c.61T>A	p.Ser21Thr	p.S21T	ENST00000308731	NM_000061.2	21	Tca/Aca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100876	27100877	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0028289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	180	353	0	ENST00000324856.7:c.4161_4162dup	p.Met1388ArgfsTer94	p.M1388Rfs*94	ENST00000324856	NM_006015.4	1386	-/GA																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988398	36988398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	16	117	0	ENST00000354822.5:c.255G>T	p.Gln85His	p.Q85H	ENST00000354822	NM_001079668.2	85	caG/caT																																																																														
CXCR4	0	MSKCC	GRCh37	2	136872969	136872969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	71	197	0	ENST00000241393.3:c.529G>A	p.Val177Ile	p.V177I	ENST00000241393	NM_003467.2	177	Gtc/Atc																																																																														
STAG2	0	MSKCC	GRCh37	X	123227940	123227946	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGATT	GAGGATT	-			P-0028291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	41	261	0	ENST00000218089.9:c.3657_3663del	p.Glu1220LeufsTer12	p.E1220Lfs*12	ENST00000218089	NM_001042749.1	1217	ggGAGGATT/gg																																																																														
ROS1	0	MSKCC	GRCh37	6	117700253	117700253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	45	408	0	ENST00000368508.3:c.2566C>T	p.His856Tyr	p.H856Y	ENST00000368508	NM_002944.2	856	Cac/Tac																																																																														
FLT3	0	MSKCC	GRCh37	13	28636134	28636134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	323	320	0	ENST00000241453.7:c.238G>A	p.Ala80Thr	p.A80T	ENST00000241453	NM_004119.2	80	Gct/Act																																																																														
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	102	295	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	136	192	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748374	43748375	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	CA			P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	208	419	0	ENST00000382044.4:c.2431_2432delinsTG	p.Glu811Ter	p.E811*	ENST00000382044	NM_001141980.1	811	GAa/TGa																																																																														
AXIN1	0	MSKCC	GRCh37	16	348083	348083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	157	367	0	ENST00000262320.3:c.1423G>A	p.Val475Ile	p.V475I	ENST00000262320	NM_003502.3	475	Gta/Ata																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368209	45368209	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	60	259	0	ENST00000262160.6:c.1393A>C	p.Ser465Arg	p.S465R	ENST00000262160	NM_005901.5	465	Agc/Cgc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395688	45395688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	85	283	0	ENST00000262160.6:c.446G>T	p.Cys149Phe	p.C149F	ENST00000262160	NM_005901.5	149	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	77	616	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	87	573	3	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TRAF7	0	MSKCC	GRCh37	16	2226309	2226309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	54	771	1	ENST00000326181.6:c.1922G>A	p.Arg641His	p.R641H	ENST00000326181	NM_032271.2	641	cGt/cAt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459879	149459879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	157	750	2	ENST00000286301.3:c.328G>A	p.Val110Met	p.V110M	ENST00000286301	NM_005211.3	110	Gtg/Atg																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0028359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	77	587	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467843	50467843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	120	448	1	ENST00000331340.3:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000331340	NM_006060.4	360	Cgc/Tgc																																																																														
PREX2	0	MSKCC	GRCh37	8	68982089	68982089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	79	704	0	ENST00000288368.4:c.1463G>A	p.Arg488His	p.R488H	ENST00000288368	NM_024870.2	488	cGt/cAt																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468167	50468167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	129	636	1	ENST00000331340.3:c.1402C>T	p.Arg468Trp	p.R468W	ENST00000331340	NM_006060.4	468	Cgg/Tgg																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871005	12871006	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	102	470	0	ENST00000228872.4:c.233dup	p.Val79GlyfsTer46	p.V79Gfs*46	ENST00000228872	NM_004064.3	78	gag/gAag																																																																														
GLI1	0	MSKCC	GRCh37	12	57864291	57864291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	134	589	0	ENST00000228682.2:c.1768C>T	p.Arg590Trp	p.R590W	ENST00000228682	NM_005269.2	590	Cgg/Tgg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245480	153245481	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	101	654	0	ENST00000281708.4:c.1710_1711del	p.Gly571GlufsTer33	p.G571Efs*33	ENST00000281708	NM_033632.3	570	acAGgg/acgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	38	404	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CBFB	0	MSKCC	GRCh37	16	67100658	67100658	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	167	613	1	ENST00000412916.2:c.356T>A	p.Leu119Gln	p.L119Q	ENST00000412916		119	cTg/cAg																																																																														
TBX3	0	MSKCC	GRCh37	12	115111972	115111972	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0028360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	174	621	0	ENST00000257566.3:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000257566	NM_016569.3	590	Cag/Tag																																																																														
IGF2	0	MSKCC	GRCh37	11	2154760	2154760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143785521		P-0028360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	164	675	1	ENST00000434045.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000434045	NM_001127598.1	154	cCg/cTg																																																																														
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	110	357	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																																																														
CBFB	0	MSKCC	GRCh37	16	67070551	67070551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	26	302	0	ENST00000412916.2:c.175G>T	p.Ala59Ser	p.A59S	ENST00000412916		59	Gcc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	25	684	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	43	403	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0028362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	45	587	0	ENST00000288602.6:c.1798_1799delGTinsAG	p.Val600Arg	p.V600R	ENST00000288602	NM_004333.4	600	GTg/AGg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32936806	32936806	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	52	513	0	ENST00000380152.3:c.7954del	p.Val2652CysfsTer5	p.V2652Cfs*5	ENST00000380152		2651	aGg/ag																																																																														
BRIP1	0	MSKCC	GRCh37	17	59760743	59760743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	44	699	0	ENST00000259008.2:c.3664G>C	p.Glu1222Gln	p.E1222Q	ENST00000259008	NM_032043.2	1222	Gaa/Caa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105541	27105541	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	69	523	1	ENST00000324856.7:c.5152G>T	p.Glu1718Ter	p.E1718*	ENST00000324856	NM_006015.4	1718	Gaa/Taa																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871147	12871148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0028363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	35	321	0	ENST00000228872.4:c.375_376insTT	p.Glu126LeufsTer20	p.E126Lfs*20	ENST00000228872	NM_004064.3	125	tct/tcTTt																																																																														
KRAS	0	MSKCC	GRCh37	12	25380269	25380270	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCCTCTTGACCTGCTGTGTCGAGAATA			P-0028363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	56	703	0	ENST00000256078.4:c.162_188dup	p.Asp54_Glu62dup	p.D54_E62dup	ENST00000256078	NM_033360.2	54	gag/gaTATTCTCGACACAGCAGGTCAAGAGGAg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	96	346	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115779	8115780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	111	814	2	ENST00000346208.3:c.1131dup	p.Val378SerfsTer3	p.V378Sfs*3	ENST00000346208		375	-/A																																																																														
IRF4	0	MSKCC	GRCh37	6	407525	407525	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	100	697	0	ENST00000380956.4:c.1283A>G	p.Tyr428Cys	p.Y428C	ENST00000380956	NM_001195286.1	428	tAc/tGc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932368	36932368	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	76	565	1	ENST00000361632.4:c.2101G>T	p.Glu701Ter	p.E701*	ENST00000361632		701	Gag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108163425	108163425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	68	661	0	ENST00000278616.4:c.4516G>A	p.Val1506Met	p.V1506M	ENST00000278616	NM_000051.3	1506	Gtg/Atg																																																																														
MGA	0	MSKCC	GRCh37	15	42052615	42052615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	80	448	0	ENST00000219905.7:c.7286C>T	p.Thr2429Ile	p.T2429I	ENST00000219905	NM_001164273.1	2429	aCt/aTt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348421	89348421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	74	549	0	ENST00000301030.4:c.4529C>T	p.Pro1510Leu	p.P1510L	ENST00000301030	NM_001256183.1	1510	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578181	7578181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	83	692	0	ENST00000269305.4:c.668C>T	p.Pro223Leu	p.P223L	ENST00000269305	NM_001126112.2	223	cCt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0028367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	87	671	0	ENST00000269305.4:c.309C>G	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taG																																																																														
ROS1	0	MSKCC	GRCh37	6	117678008	117678008	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	79	548	1	ENST00000368508.3:c.3925T>A	p.Leu1309Met	p.L1309M	ENST00000368508	NM_002944.2	1309	Ttg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	93	395	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	93	395	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	93	395	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
RXRA	0	MSKCC	GRCh37	9	137325956	137325989	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCTCTCGAACCCGGCCGAGGTGGAGGCGCTGA	GGGCTCTCGAACCCGGCCGAGGTGGAGGCGCTGA	-			P-0028367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	59	578	0	ENST00000481739.1:c.1147_1180del	p.Leu383ArgfsTer68	p.L383Rfs*68	ENST00000481739	NM_002957.4	382	GGGCTCTCGAACCCGGCCGAGGTGGAGGCGCTGAgg/gg																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	292	385	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
STK11	0	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			524	269	488	0	ENST00000326873.7:c.598-2A>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																															
TSC1	0	MSKCC	GRCh37	9	135781380	135781380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	190	581	2	ENST00000298552.3:c.1585G>A	p.Ala529Thr	p.A529T	ENST00000298552	NM_001162426.1	529	Gcc/Acc																																																																														
STK40	0	MSKCC	GRCh37	1	36826887	36826887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			783	272	594	0	ENST00000373129.3:c.47G>T	p.Arg16Met	p.R16M	ENST00000373129	NM_032017.1	16	aGg/aTg																																																																														
IKBKE	0	MSKCC	GRCh37	1	206651643	206651643	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1236	178	770	0	ENST00000367120.3:c.953A>T	p.Gln318Leu	p.Q318L	ENST00000367120	NM_014002.3	318	cAg/cTg																																																																														
ATM	0	MSKCC	GRCh37	11	108186757	108186757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	56	496	0	ENST00000278616.4:c.6115G>T	p.Glu2039Ter	p.E2039*	ENST00000278616	NM_000051.3	2039	Gaa/Taa																																																																														
ATM	0	MSKCC	GRCh37	11	108218027	108218027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	249	391	0	ENST00000278616.4:c.8606G>A	p.Gly2869Asp	p.G2869D	ENST00000278616	NM_000051.3	2869	gGt/gAt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302935	15302936	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0022291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			699	366	623	2	ENST00000263388.2:c.514_515delinsTT	p.Gly172Phe	p.G172F	ENST00000263388	NM_000435.2	172	GGc/TTc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31388732	31388732	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0022291-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			829	85	460	0	ENST00000328111.2:c.1996+1G>A		p.X666_splice	ENST00000328111	NM_006892.3	666																																																																															
RPTOR	0	MSKCC	GRCh37	17	78727819	78727819	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs202162615		P-0027817-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			454	86	695	0	ENST00000306801.3:c.664A>G	p.Ile222Val	p.I222V	ENST00000306801	NM_020761.2	222	Atc/Gtc																																																																														
RBM10	0	MSKCC	GRCh37	X	47045667	47045667	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027817-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			323	51	576	1	ENST00000329236.7:c.2314C>T	p.Gln772Ter	p.Q772*	ENST00000329236	NM_001204466.1	772	Cag/Tag																																																																														
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027817-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			265	64	401	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52613209	52613210	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027817-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			476	59	540	0	ENST00000394830.3:c.3318dup	p.Glu1107ArgfsTer11	p.E1107Rfs*11	ENST00000394830	NM_018313.4	1106	-/A																																																																														
STK11	0	MSKCC	GRCh37	19	1220384	1220389	+	inframe_deletion	In_Frame_Del	DEL	GCTGAT	GCTGAT	-			P-0027817-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			328	49	522	0	ENST00000326873.7:c.477_482del	p.Gln159_Ile161delinsHis	p.Q159_I161delinsH	ENST00000326873	NM_000455.4	159	caGCTGATt/cat																																																																														
KEAP1	0	MSKCC	GRCh37	19	10597406	10597413	+	frameshift_variant	Frame_Shift_Del	DEL	CGATGTCA	CGATGTCA	GAAGGCC			P-0027817-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			372	50	721	2	ENST00000171111.5:c.1790_1797delinsGGCCTTC	p.Met597ArgfsTer75	p.M597Rfs*75	ENST00000171111	NM_203500.1	597	aTGACATCG/aGGCCTTC																																																																														
EPHA5	0	MSKCC	GRCh37	4	66242716	66242716	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027817-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			298	51	471	0	ENST00000273854.3:c.1856G>T	p.Trp619Leu	p.W619L	ENST00000273854	NM_004439.5	619	tGg/tTg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468144	50468144	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027817-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			333	50	504	0	ENST00000331340.3:c.1379A>T	p.Lys460Met	p.K460M	ENST00000331340	NM_006060.4	460	aAg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	115	801	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																														
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	89	674	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15826386	15826386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	53	544	0	ENST00000307771.7:c.430G>A	p.Glu144Lys	p.E144K	ENST00000307771	NM_005089.3	144	Gaa/Aaa																																																																														
ELF3	0	MSKCC	GRCh37	1	201981174	201981174	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	67	741	0	ENST00000359651.3:c.253del	p.Tyr85ThrfsTer70	p.Y85Tfs*70	ENST00000359651		85	Tac/ac																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426387	49426388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	107	861	2	ENST00000301067.7:c.12100dup	p.Ser4034PhefsTer6	p.S4034Ffs*6	ENST00000301067	NM_003482.3	4034	tct/tTct																																																																														
FLT3	0	MSKCC	GRCh37	13	28608466	28608466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	113	664	0	ENST00000241453.7:c.1676C>A	p.Thr559Asn	p.T559N	ENST00000241453	NM_004119.2	559	aCc/aAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971097	21971098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGGCAG			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	36	249	0	ENST00000304494.5:c.254_260dup	p.Glu88CysfsTer34	p.E88Cfs*34	ENST00000304494	NM_000077.4	87	cgg/cgCTGCCCGg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971097	21971098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGGCAG			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	36	249	0	ENST00000304494.5:c.254_260dup	p.Glu88CysfsTer34	p.E88Cfs*34	ENST00000304494	NM_000077.4	87	cgg/cgCTGCCCGg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971097	21971098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGGCAG			P-0028314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	36	249	0	ENST00000304494.5:c.254_260dup	p.Glu88CysfsTer34	p.E88Cfs*34	ENST00000304494	NM_000077.4	87	cgg/cgCTGCCCGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	403	783	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175796	176175796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	160	466	0	ENST00000367669.3:c.319G>T	p.Gly107Cys	p.G107C	ENST00000367669	NM_022457.5	107	Ggc/Tgc																																																																														
KDM5A	0	MSKCC	GRCh37	12	432296	432296	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	269	605	2	ENST00000399788.2:c.2227del	p.Val743SerfsTer18	p.V743Sfs*18	ENST00000399788	NM_001042603.1	743	Gtc/tc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424972	49424973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	352	621	0	ENST00000301067.7:c.13515_13516insAC	p.Pro4506ThrfsTer14	p.P4506Tfs*14	ENST00000301067	NM_003482.3	4505	-/AC																																																																														
AXIN1	0	MSKCC	GRCh37	16	343492	343492	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	322	650	0	ENST00000262320.3:c.2182C>T	p.Gln728Ter	p.Q728*	ENST00000262320	NM_003502.3	728	Cag/Tag																																																																														
INPP4A	0	MSKCC	GRCh37	2	99203974	99203993	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGAAGTCGCAAATATGCA	TTGGAAGTCGCAAATATGCA	-			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	104	519	0	ENST00000074304.5:c.2839_2858del	p.Gly947Ter	p.G947*	ENST00000074304	NM_001134224.1	946	gTTGGAAGTCGCAAATATGCA/g																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098809	178098809	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	508	714	0	ENST00000397062.3:c.236A>C	p.Glu79Ala	p.E79A	ENST00000397062	NM_006164.4	79	gAg/gCg																																																																														
HIST1H3A	0	MSKCC	GRCh37	6	26020882	26020882	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	203	369	0	ENST00000357647.3:c.165T>G	p.Tyr55Ter	p.Y55*	ENST00000357647	NM_003529.2	55	taT/taG																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056440	26056440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	69	263	0	ENST00000343677.2:c.217G>A	p.Val73Met	p.V73M	ENST00000343677	NM_005319.3	73	Gtg/Atg																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324085	31324085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	177	287	1	ENST00000412585.2:c.478G>T	p.Ala160Ser	p.A160S	ENST00000412585	NM_005514.6	160	Gcg/Tcg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98239083	98239083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	316	639	0	ENST00000331920.6:c.1560C>G	p.His520Gln	p.H520Q	ENST00000331920	NM_000264.3	520	caC/caG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0028316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	112	185	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0028316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	571	586	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
B2M	0	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0028316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	95	368	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445178	49445178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	211	603	1	ENST00000301067.7:c.2288C>T	p.Pro763Leu	p.P763L	ENST00000301067	NM_003482.3	763	cCg/cTg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78599539	78599539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	195	560	0	ENST00000306801.3:c.211G>A	p.Asp71Asn	p.D71N	ENST00000306801	NM_020761.2	71	Gac/Aac																																																																														
MYCN	0	MSKCC	GRCh37	2	16085798	16085798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	156	446	0	ENST00000281043.3:c.974C>T	p.Pro325Leu	p.P325L	ENST00000281043	NM_005378.4	325	cCc/cTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93969117	93969117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	117	352	0	ENST00000369303.4:c.1879G>A	p.Glu627Lys	p.E627K	ENST00000369303	NM_004440.3	627	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	219	555	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	351	687	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
AR	0	MSKCC	GRCh37	X	66942700	66942700	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200801099		P-0028321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	129	668	0	ENST00000374690.3:c.2481C>A	p.Phe827Leu	p.F827L	ENST00000374690	NM_000044.3	827	ttC/ttA																																																																														
KDM6A	0	MSKCC	GRCh37	X	44879904	44879904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	216	636	0	ENST00000377967.4:c.493C>T	p.Arg165Ter	p.R165*	ENST00000377967	NM_021140.2	165	Cga/Tga																																																																														
MEN1	0	MSKCC	GRCh37	11	64573127	64573127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	190	393	1	ENST00000337652.1:c.1180C>T	p.Arg394Trp	p.R394W	ENST00000337652	NM_130803.2	394	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	548	579	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185161363	185161363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	293	485	0	ENST00000265026.3:c.790G>C	p.Ala264Pro	p.A264P	ENST00000265026	NM_004721.4	264	Gca/Cca																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156515	55156515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	44	465	0	ENST00000257290.5:c.2916T>G	p.Ser972Arg	p.S972R	ENST00000257290	NM_006206.4	972	agT/agG																																																																														
PTCH1	0	MSKCC	GRCh37	9	98221889	98221889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	31	439	0	ENST00000331920.6:c.2880G>T	p.Arg960Ser	p.R960S	ENST00000331920	NM_000264.3	960	agG/agT																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	449	662	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
CDK12	0	MSKCC	GRCh37	17	37667819	37667819	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	1898	581	1	ENST00000447079.4:c.2704C>T	p.Arg902Ter	p.R902*	ENST00000447079	NM_015083.1	902	Cga/Tga																																																																														
GNAS	0	MSKCC	GRCh37	20	57480494	57480494	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	138	422	0	ENST00000371085.3:c.489C>A	p.Tyr163Ter	p.Y163*	ENST00000371085	NM_000516.4	163	taC/taA																																																																														
ATM	0	MSKCC	GRCh37	11	108199842	108199842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	395	264	0	ENST00000278616.4:c.7184A>G	p.Asp2395Gly	p.D2395G	ENST00000278616	NM_000051.3	2395	gAt/gGt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18650583	18650583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	162	598	1	ENST00000266497.5:c.2794G>T	p.Val932Phe	p.V932F	ENST00000266497		932	Gtt/Ttt																																																																														
ARID2	0	MSKCC	GRCh37	12	46231178	46231178	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	289	473	0	ENST00000334344.6:c.1098G>C	p.Arg366Ser	p.R366S	ENST00000334344	NM_152641.2	366	agG/agC																																																																														
FLT3	0	MSKCC	GRCh37	13	28592653	28592653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	399	637	0	ENST00000241453.7:c.2492G>T	p.Gly831Val	p.G831V	ENST00000241453	NM_004119.2	831	gGa/gTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	513	614	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
SPEN	0	MSKCC	GRCh37	1	16258067	16258067	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	159	390	0	ENST00000375759.3:c.5332G>C	p.Asp1778His	p.D1778H	ENST00000375759	NM_015001.2	1778	Gac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	47	499	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	56	608	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
MAX	0	MSKCC	GRCh37	14	65544677	65544677	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	75	609	0	ENST00000358664.4:c.249A>T	p.Gln83His	p.Q83H	ENST00000358664	NM_002382.4	83	caA/caT																																																																														
ATRX	0	MSKCC	GRCh37	X	76938554	76938554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	37	443	1	ENST00000373344.5:c.2194G>A	p.Asp732Asn	p.D732N	ENST00000373344	NM_000489.3	732	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	57	412	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	73	478	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	30	253	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
ARID2	0	MSKCC	GRCh37	12	46244453	46244454	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	46	438	0	ENST00000334344.6:c.2552dup	p.Gln852ThrfsTer99	p.Q852Tfs*99	ENST00000334344	NM_152641.2	849	-/C																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942029	44942030	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	37	165	0	ENST00000377967.4:c.3284dup	p.Trp1096ValfsTer7	p.W1096Vfs*7	ENST00000377967	NM_021140.2	1093	-/A																																																																														
INPP4B	0	MSKCC	GRCh37	4	143033774	143033774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	62	424	0	ENST00000262992.4:c.2197A>G	p.Ile733Val	p.I733V	ENST00000262992	NM_001101669.1	733	Att/Gtt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520512	176520512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	57	574	1	ENST00000292408.4:c.1357G>A	p.Asp453Asn	p.D453N	ENST00000292408	NM_213647.1	453	Gat/Aat																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970975	21970976	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	95	397	0	ENST00000304494.5:c.382_383insTA	p.Arg128LeufsTer19	p.R128Lfs*19	ENST00000304494	NM_000077.4	128	cgg/cTAgg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970975	21970976	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0028334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	95	397	0	ENST00000304494.5:c.382_383insTA	p.Arg128LeufsTer19	p.R128Lfs*19	ENST00000304494	NM_000077.4	128	cgg/cTAgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0015434-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			942	333	828	4	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971168	21971178	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCAGCTCC	GCAGCAGCTCC	CCA			P-0015434-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	245	447	1	ENST00000304494.5:c.180_190delGGAGCTGCTGCinsTGG	p.Glu61GlyfsTer56	p.E61Gfs*56	ENST00000304494	NM_000077.4	60	gcGGAGCTGCTGCtg/gcTGGtg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971168	21971178	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCAGCTCC	GCAGCAGCTCC	CCA			P-0015434-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	245	447	1	ENST00000304494.5:c.180_190delGGAGCTGCTGCinsTGG	p.Glu61GlyfsTer56	p.E61Gfs*56	ENST00000304494	NM_000077.4	60	gcGGAGCTGCTGCtg/gcTGGtg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971168	21971178	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCAGCTCC	GCAGCAGCTCC	CCA			P-0015434-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	245	447	1	ENST00000304494.5:c.180_190delGGAGCTGCTGCinsTGG	p.Glu61GlyfsTer56	p.E61Gfs*56	ENST00000304494	NM_000077.4	60	gcGGAGCTGCTGCtg/gcTGGtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579714	7579714	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	381	582	1	ENST00000269305.4:c.82del	p.Glu28LysfsTer16	p.E28Kfs*16	ENST00000269305	NM_001126112.2	28	Gaa/aa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0028093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	44	334	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0028093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	44	334	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15278099	15278099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139983430		P-0028093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	93	665	2	ENST00000263388.2:c.5323G>A	p.Ala1775Thr	p.A1775T	ENST00000263388	NM_000435.2	1775	Gca/Aca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435469	49435469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	50	649	1	ENST00000301067.7:c.6203G>A	p.Arg2068Gln	p.R2068Q	ENST00000301067	NM_003482.3	2068	cGg/cAg																																																																														
MGA	0	MSKCC	GRCh37	15	42059476	42059476	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0028093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	31	328	0	ENST00000219905.7:c.9196T>C	p.Ter3066ArgextTer51	p.*3066Rext*51	ENST00000219905	NM_001164273.1	3066	Tga/Cga																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4097325	4097326	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CTATCCA			P-0028093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	52	668	0	ENST00000262948.5:c.929_935dup	p.Arg313GlyfsTer2	p.R313Gfs*2	ENST00000262948	NM_030662.3	312	agc/agTGGATAGc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920424	134920424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	55	609	1	ENST00000398015.3:c.2239G>T	p.Ala747Ser	p.A747S	ENST00000398015	NM_004441.4	747	Gct/Tct																																																																														
TP53	0	MSKCC	GRCh37	17	7579429	7579429	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	290	523	0	ENST00000269305.4:c.258del	p.Pro87GlnfsTer36	p.P87Qfs*36	ENST00000269305	NM_001126112.2	86	gcA/gc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554186	63554186	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	119	640	0	ENST00000307078.5:c.553A>T	p.Asn185Tyr	p.N185Y	ENST00000307078	NM_004655.3	185	Aat/Tat																																																																														
SDHA	0	MSKCC	GRCh37	5	225666	225666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	130	637	0	ENST00000264932.6:c.445G>A	p.Ala149Thr	p.A149T	ENST00000264932	NM_004168.2	149	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	159	289	0				ENST00000310581	NM_198253.2																																																																																
CBFB	0	MSKCC	GRCh37	16	67063320	67063320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	112	262	0	ENST00000412916.2:c.10G>T	p.Val4Phe	p.V4F	ENST00000412916		4	Gtc/Ttc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971167	21971167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	122	441	0	ENST00000304494.5:c.191T>C	p.Leu64Pro	p.L64P	ENST00000304494	NM_000077.4	64	cTg/cCg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971167	21971167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	122	441	0	ENST00000304494.5:c.191T>C	p.Leu64Pro	p.L64P	ENST00000304494	NM_000077.4	64	cTg/cCg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44928935	44928935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	218	263	1	ENST00000377967.4:c.2035C>T	p.Gln679Ter	p.Q679*	ENST00000377967	NM_021140.2	679	Cag/Tag																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64135882	64135959	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTACCAGGTGGGACCTCTGACGCGCCGCCTTCGCCTTCGCCTTCGCCTTCGCCTCCAGGACTCGCCCTTCTTCCAGCA	CTACCAGGTGGGACCTCTGACGCGCCGCCTTCGCCTTCGCCTTCGCCTTCGCCTCCAGGACTCGCCCTTCTTCCAGCA	GTACC			P-0028095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	46	590	2	ENST00000334205.4:c.1201-58_1220delinsGTACC		p.X401_splice	ENST00000334205	NM_003942.2	401																																																																															
TP53	0	MSKCC	GRCh37	17	7573968	7573978	+	frameshift_variant	Frame_Shift_Del	DEL	GGCATCCTTGA	GGCATCCTTGA	-			P-0028095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	134	694	0	ENST00000269305.4:c.1049_1059del	p.Leu350ProfsTer28	p.L350Pfs*28	ENST00000269305	NM_001126112.2	350	cTCAAGGATGCC/c																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15299085	15299085	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	90	639	1	ENST00000263388.2:c.1453A>T	p.Lys485Ter	p.K485*	ENST00000263388	NM_000435.2	485	Aag/Tag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36218489	36218489	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	49	584	0	ENST00000222270.7:c.4268C>G	p.Ser1423Cys	p.S1423C	ENST00000222270	NM_014727.1	1423	tCc/tGc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652032	36652037	+	inframe_deletion	In_Frame_Del	DEL	GACTTT	GACTTT	-			P-0028095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	269	721	0	ENST00000244741.5:c.155_160del	p.Asp52_Phe53del	p.D52_F53del	ENST00000244741	NM_000389.4	52	GACTTT/-																																																																														
LYN	0	MSKCC	GRCh37	8	56864623	56864623	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	71	672	0	ENST00000519728.1:c.586T>C	p.Ser196Pro	p.S196P	ENST00000519728	NM_002350.3	196	Tct/Cct																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463580	25463580	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	141	571	0	ENST00000264709.3:c.2102T>G	p.Phe701Cys	p.F701C	ENST00000264709	NM_175629.2	701	tTc/tGc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153250823	153250823	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0028098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	127	385	0	ENST00000281708.4:c.1236+1G>C		p.X412_splice	ENST00000281708	NM_033632.3	412																																																																															
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	173	792	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
ARID2	0	MSKCC	GRCh37	12	46245465	46245466	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	53	436	0	ENST00000334344.6:c.3560dup	p.Ser1188GlufsTer53	p.S1188Efs*53	ENST00000334344	NM_152641.2	1187	gtg/gTtg																																																																														
BRD4	0	MSKCC	GRCh37	19	15349916	15349916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	37	576	0	ENST00000263377.2:c.3736G>A	p.Glu1246Lys	p.E1246K	ENST00000263377	NM_058243.2	1246	Gag/Aag																																																																														
GLI1	0	MSKCC	GRCh37	12	57865006	57865006	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	116	723	0	ENST00000228682.2:c.2483G>C	p.Gly828Ala	p.G828A	ENST00000228682	NM_005269.2	828	gGa/gCa																																																																														
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	481	760	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
POLD1	0	MSKCC	GRCh37	19	50905112	50905112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	315	799	0	ENST00000440232.2:c.394G>A	p.Asp132Asn	p.D132N	ENST00000440232	NM_002691.3	132	Gat/Aat																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508860	106508860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	278	553	0	ENST00000359195.3:c.854C>T	p.Thr285Met	p.T285M	ENST00000359195	NM_002649.2	285	aCg/aTg																																																																														
JAK1	0	MSKCC	GRCh37	1	65321216	65321216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	288	444	0	ENST00000342505.4:c.1624C>T	p.Arg542Cys	p.R542C	ENST00000342505	NM_002227.2	542	Cgc/Tgc																																																																														
MGA	0	MSKCC	GRCh37	15	42040892	42040892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	52	543	0	ENST00000219905.7:c.5270G>A	p.Arg1757His	p.R1757H	ENST00000219905	NM_001164273.1	1757	cGt/cAt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276825	15276825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	277	742	1	ENST00000263388.2:c.5440G>A	p.Asp1814Asn	p.D1814N	ENST00000263388	NM_000435.2	1814	Gat/Aat																																																																														
BRD4	0	MSKCC	GRCh37	19	15349870	15349870	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	274	482	0	ENST00000263377.2:c.3782G>T	p.Arg1261Met	p.R1261M	ENST00000263377	NM_058243.2	1261	aGg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112175496	112175506	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCTCCGTT	CCAGCTCCGTT	A			P-0028375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	283	389	0	ENST00000257430.4:c.4205_4215delinsA	p.Ala1402AspfsTer10	p.A1402Dfs*10	ENST00000257430	NM_000038.5	1402	gCCAGCTCCGTT/gA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0028377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	160	580	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																														
INSR	0	MSKCC	GRCh37	19	7126642	7126642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	72	760	1	ENST00000302850.5:c.2966G>T	p.Gly989Val	p.G989V	ENST00000302850	NM_000208.2	989	gGa/gTa																																																																														
MED12	0	MSKCC	GRCh37	X	70351993	70351993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	113	827	0	ENST00000374080.3:c.4190G>A	p.Gly1397Glu	p.G1397E	ENST00000374080		1397	gGg/gAg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710673	114710673	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	167	568	0	ENST00000543371.1:c.160del	p.Thr54ArgfsTer54	p.T54Rfs*54	ENST00000543371	NM_001198531.1	53	gAa/ga																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264377	46264378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	107	463	0	ENST00000371998.3:c.1427dup	p.Asn476LysfsTer11	p.N476Kfs*11	ENST00000371998		475	cca/ccAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47098424	47098425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGTACA			P-0028378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	251	577	0	ENST00000409792.3:c.6843_6849dup	p.Gln2284CysfsTer87	p.Q2284Cfs*87	ENST00000409792	NM_014159.6	2283	-/TGTACAG																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956626	93956626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	286	496	0	ENST00000369303.4:c.2610G>T	p.Leu870Phe	p.L870F	ENST00000369303	NM_004440.3	870	ttG/ttT																																																																														
SMO	0	MSKCC	GRCh37	7	128845128	128845128	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	200	844	2	ENST00000249373.3:c.622G>T	p.Glu208Ter	p.E208*	ENST00000249373	NM_005631.4	208	Gag/Tag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	40	665	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63760017	63760018	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0028381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	27	411	0	ENST00000279873.7:c.670_671del	p.Tyr224LeufsTer6	p.Y224Lfs*6	ENST00000279873	NM_032199.2	224	TAc/c																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267499	198267499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	21	505	0	ENST00000335508.6:c.1858A>G	p.Met620Val	p.M620V	ENST00000335508	NM_012433.2	620	Atg/Gtg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	20	556	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	67	765	3	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	32	392	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	169	610	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	43	515	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	38	430	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
RET	0	MSKCC	GRCh37	10	43607552	43607552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	32	578	0	ENST00000355710.3:c.1528G>T	p.Ala510Ser	p.A510S	ENST00000355710	NM_020975.4	510	Gcc/Tcc																																																																														
RBM10	0	MSKCC	GRCh37	X	47038846	47038846	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	64	375	1	ENST00000329236.7:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000329236	NM_001204466.1	208	Caa/Taa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356175	66356175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	45	554	0	ENST00000273854.3:c.1322T>C	p.Ile441Thr	p.I441T	ENST00000273854	NM_004439.5	441	aTt/aCt																																																																														
IL7R	0	MSKCC	GRCh37	5	35873670	35873670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	32	427	0	ENST00000303115.3:c.626C>G	p.Pro209Arg	p.P209R	ENST00000303115	NM_002185.3	209	cCt/cGt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513358	106513359	+	missense_variant	Missense_Mutation	DNP	TG	TG	GA			P-0028092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	63	358	0	ENST00000359195.3:c.2262_2263delinsGA	p.Glu755Lys	p.E755K	ENST00000359195	NM_002649.2	754	gcTGaa/gcGAaa																																																																														
FGFR1	0	MSKCC	GRCh37	8	38272308	38272308	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014433-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			34	330	659	0	ENST00000425967.3:c.2059A>G	p.Lys687Glu	p.K687E	ENST00000425967	NM_001174067.1	687	Aag/Gag																																																																														
MAX	0	MSKCC	GRCh37	14	65543174	65543196	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	GCTGGCCTGCCCCGAGTGGCTTA	GCTGGCCTGCCCCGAGTGGCTTA	-			P-0014433-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			12	128	268	0	ENST00000358664.4:c.481_*20delTAAGCCACTCGGGGCAGGCCAGC		p.*161fs*	ENST00000358664	NM_002382.4	161																																																																															
SETD2	0	MSKCC	GRCh37	3	47147578	47147578	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014433-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			10	209	429	0	ENST00000409792.3:c.4748T>C	p.Val1583Ala	p.V1583A	ENST00000409792	NM_014159.6	1583	gTa/gCa																																																																														
RB1	0	MSKCC	GRCh37	13	49030378	49030378	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	346	395	0	ENST00000267163.4:c.1853C>A	p.Ser618Ter	p.S618*	ENST00000267163	NM_000321.2	618	tCa/tAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578474	7578610	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAA	CGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAA	-			P-0028176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	264	682	0	ENST00000269305.4:c.376-56_456del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
CALR	0	MSKCC	GRCh37	19	13054727	13054727	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0028176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	200	313	0	ENST00000316448.5:c.1254G>T	p.Ter418TyrextTer9	p.*418Yext*9	ENST00000316448	NM_004343.3	418	taG/taT																																																																														
JAK2	0	MSKCC	GRCh37	9	5090775	5090775	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	93	321	0	ENST00000381652.3:c.2923A>G	p.Arg975Gly	p.R975G	ENST00000381652	NM_004972.3	975	Agg/Ggg																																																																														
ATM	0	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	26	548	3	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																														
NF2	0	MSKCC	GRCh37	22	30050691	30050691	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	69	449	0	ENST00000338641.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000338641	NM_000268.3	165	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	31	557	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0028272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	225	514	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
POLE	0	MSKCC	GRCh37	12	133219225	133219241	+	frameshift_variant	Frame_Shift_Del	DEL	GGAATTCCTCCAAGACA	GGAATTCCTCCAAGACA	-			P-0028272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	55	702	0	ENST00000320574.5:c.4803_4819del	p.Val1602ThrfsTer8	p.V1602Tfs*8	ENST00000320574	NM_006231.2	1601	ccTGTCTTGGAGGAATTCCca/ccca																																																																														
PTP4A1	0	MSKCC	GRCh37	6	64288934	64288934	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0028272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	66	436	0	ENST00000370651.3:c.329+1G>A		p.X110_splice	ENST00000370651	NM_003463.4	110																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	115	523	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	141	813	0	ENST00000269305.4:c.638G>C	p.Arg213Pro	p.R213P	ENST00000269305	NM_001126112.2	213	cGa/cCa																																																																														
BCOR	0	MSKCC	GRCh37	X	39922297	39922297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	26	392	0	ENST00000378444.4:c.3875C>T	p.Pro1292Leu	p.P1292L	ENST00000378444	NM_001123385.1	1292	cCc/cTc																																																																														
PREX2	0	MSKCC	GRCh37	8	69028127	69028127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	102	825	0	ENST00000288368.4:c.3286G>T	p.Asp1096Tyr	p.D1096Y	ENST00000288368	NM_024870.2	1096	Gat/Tat																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435523	18435523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	68	373	0	ENST00000266497.5:c.508G>A	p.Gly170Arg	p.G170R	ENST00000266497		170	Gga/Aga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431673	49431673	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	162	816	0	ENST00000301067.7:c.9466C>G	p.Pro3156Ala	p.P3156A	ENST00000301067	NM_003482.3	3156	Cca/Gca																																																																														
POLE	0	MSKCC	GRCh37	12	133210810	133210811	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	61	721	1	ENST00000320574.5:c.5965_5966delinsAG	p.Ala1989Arg	p.A1989R	ENST00000320574	NM_006231.2	1989	GCa/AGa																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39595442	39595442	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	36	391	0	ENST00000262039.4:c.1330del	p.Gln444LysfsTer3	p.Q444Kfs*3	ENST00000262039	NM_002647.2	443	tCc/tc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222550	2222550	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	97	663	0	ENST00000398665.3:c.3382A>C	p.Asn1128His	p.N1128H	ENST00000398665	NM_032482.2	1128	Aac/Cac																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15292520	15292520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	146	860	2	ENST00000263388.2:c.2659G>T	p.Asp887Tyr	p.D887Y	ENST00000263388	NM_000435.2	887	Gat/Tat																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101005	41101005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	114	665	0	ENST00000373198.4:c.1351G>T	p.Gly451Cys	p.G451C	ENST00000373198	NM_133170.3	451	Ggc/Tgc																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41747945	41747945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	30	273	0	ENST00000226382.2:c.824C>A	p.Pro275His	p.P275H	ENST00000226382	NM_003924.3	275	cCc/cAc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55144642	55144642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	54	486	0	ENST00000257290.5:c.2116G>T	p.Asp706Tyr	p.D706Y	ENST00000257290	NM_006206.4	706	Gat/Tat																																																																														
KDR	0	MSKCC	GRCh37	4	55961763	55961763	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	59	569	0	ENST00000263923.4:c.2798A>T	p.Asn933Ile	p.N933I	ENST00000263923	NM_002253.2	933	aAt/aTt																																																																														
FAT1	0	MSKCC	GRCh37	4	187518061	187518061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	79	708	0	ENST00000441802.2:c.12633del	p.Lys4211AsnfsTer27	p.K4211Nfs*27	ENST00000441802	NM_005245.3	4211	aaG/aa																																																																														
FAT1	0	MSKCC	GRCh37	4	187524498	187524498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	97	727	0	ENST00000441802.2:c.11182G>T	p.Val3728Phe	p.V3728F	ENST00000441802	NM_005245.3	3728	Gtt/Ttt																																																																														
MDC1	0	MSKCC	GRCh37	6	30676052	30676052	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	56	560	0	ENST00000376406.3:c.2304T>A	p.Phe768Leu	p.F768L	ENST00000376406	NM_014641.2	768	ttT/ttA																																																																														
PRDM1	0	MSKCC	GRCh37	6	106554887	106554887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	112	633	2	ENST00000369096.4:c.2004C>A	p.Phe668Leu	p.F668L	ENST00000369096	NM_001198.3	668	ttC/ttA																																																																														
DUSP4	0	MSKCC	GRCh37	8	29194643	29194643	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	93	920	0	ENST00000240100.2:c.1085C>A	p.Ser362Ter	p.S362*	ENST00000240100	NM_001394.6	362	tCg/tAg																																																																														
KLF4	0	MSKCC	GRCh37	9	110249415	110249416	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	190	1134	1	ENST00000374672.4:c.1157_1158delinsTG	p.Arg386Leu	p.R386L	ENST00000374672	NM_004235.4	386	cGA/cTG																																																																														
ATRX	0	MSKCC	GRCh37	X	76778754	76778754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	92	589	1	ENST00000373344.5:c.6825G>T	p.Trp2275Cys	p.W2275C	ENST00000373344	NM_000489.3	2275	tgG/tgT																																																																														
FOXP1	0	MSKCC	GRCh37	3	71161722	71161722	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	26	364	1	ENST00000318789.4:c.247T>A	p.Ser83Thr	p.S83T	ENST00000318789	NM_032682.5	83	Tct/Act																																																																														
BCOR	0	MSKCC	GRCh37	X	39933533	39933533	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	48	751	0	ENST00000378444.4:c.1066G>T	p.Glu356Ter	p.E356*	ENST00000378444	NM_001123385.1	356	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	268	623	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0028102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	10	27	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55136825	55136825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	54	464	1	ENST00000257290.5:c.1147C>T	p.Arg383Cys	p.R383C	ENST00000257290	NM_006206.4	383	Cgt/Tgt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945591	151945591	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	29	252	0	ENST00000262189.6:c.1928T>C	p.Ile643Thr	p.I643T	ENST00000262189	NM_170606.2	643	aTt/aCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	119	518	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
JAK1	0	MSKCC	GRCh37	1	65305462	65305462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	68	404	0	ENST00000342505.4:c.2666T>C	p.Val889Ala	p.V889A	ENST00000342505	NM_002227.2	889	gTt/gCt																																																																														
ATM	0	MSKCC	GRCh37	11	108201008	108201008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	55	456	1	ENST00000278616.4:c.7375C>A	p.Arg2459Ser	p.R2459S	ENST00000278616	NM_000051.3	2459	Cgt/Agt																																																																														
POLE	0	MSKCC	GRCh37	12	133245480	133245480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	165	651	0	ENST00000320574.5:c.1840C>A	p.Pro614Thr	p.P614T	ENST00000320574	NM_006231.2	614	Ccc/Acc																																																																														
PALB2	0	MSKCC	GRCh37	16	23647412	23647412	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	93	497	0	ENST00000261584.4:c.455del	p.Lys152ArgfsTer25	p.K152Rfs*25	ENST00000261584	NM_024675.3	152	aAg/ag																																																																														
INSR	0	MSKCC	GRCh37	19	7143100	7143100	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	58	529	0	ENST00000302850.5:c.2269C>G	p.Pro757Ala	p.P757A	ENST00000302850	NM_000208.2	757	Cca/Gca																																																																														
CD79A	0	MSKCC	GRCh37	19	42383281	42383281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	119	675	0	ENST00000221972.3:c.301G>T	p.Gly101Trp	p.G101W	ENST00000221972	NM_021601.3	101	Ggg/Tgg																																																																														
WWTR1	0	MSKCC	GRCh37	3	149260308	149260308	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	151	879	0	ENST00000360632.3:c.585C>G	p.His195Gln	p.H195Q	ENST00000360632	NM_015472.4	195	caC/caG																																																																														
KDR	0	MSKCC	GRCh37	4	55958812	55958812	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	102	590	0	ENST00000263923.4:c.3041A>C	p.Lys1014Thr	p.K1014T	ENST00000263923	NM_002253.2	1014	aAg/aCg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	619	562	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	71	563	0	ENST00000269305.4:c.530C>G	p.Pro177Arg	p.P177R	ENST00000269305	NM_001126112.2	177	cCc/cGc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430042	78430042	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	39	232	0	ENST00000370768.2:c.838-1G>T		p.X280_splice	ENST00000370768	NM_003902.3	280																																																																															
ARID2	0	MSKCC	GRCh37	12	46285871	46285871	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	69	461	0	ENST00000334344.6:c.5140del	p.Ser1714LeufsTer7	p.S1714Lfs*7	ENST00000334344	NM_152641.2	1713	tcT/tc																																																																														
HGF	0	MSKCC	GRCh37	7	81355315	81355315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	43	283	0	ENST00000222390.5:c.1059C>A	p.Tyr353Ter	p.Y353*	ENST00000222390	NM_000601.4	353	taC/taA																																																																														
MED12	0	MSKCC	GRCh37	X	70349625	70349625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	52	605	1	ENST00000374080.3:c.3787C>A	p.Gln1263Lys	p.Q1263K	ENST00000374080		1263	Cag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	49	470	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	57	397	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	57	397	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0028198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	57	397	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	814	859	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022766	31022766	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs6058693		P-0028199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	80	476	0	ENST00000375687.4:c.2251G>A	p.Val751Ile	p.V751I	ENST00000375687	NM_015338.5	751	Gtt/Att																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18544092	18544093	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0028199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	220	364	1	ENST00000266497.5:c.1909_1910delinsAA	p.Pro637Asn	p.P637N	ENST00000266497		637	CCt/AAt																																																																														
SETD2	0	MSKCC	GRCh37	3	47165818	47165818	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	378	389	0	ENST00000409792.3:c.308del	p.Pro103LeufsTer8	p.P103Lfs*8	ENST00000409792	NM_014159.6	103	cCt/ct																																																																														
MST1R	0	MSKCC	GRCh37	3	49935078	49935078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	96	705	0	ENST00000296474.3:c.1921G>A	p.Glu641Lys	p.E641K	ENST00000296474	NM_002447.2	641	Gaa/Aaa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71019957	71019957	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	125	121	0	ENST00000318789.4:c.1653-1G>T		p.X551_splice	ENST00000318789	NM_032682.5	551																																																																															
SDHA	0	MSKCC	GRCh37	5	231043	231043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	148	651	0	ENST00000264932.6:c.823G>T	p.Asp275Tyr	p.D275Y	ENST00000264932	NM_004168.2	275	Gac/Tac																																																																														
SETD2	0	MSKCC	GRCh37	3	47165820	47165820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	24	386	0	ENST00000409792.3:c.306C>A	p.Asn102Lys	p.N102K	ENST00000409792	NM_014159.6	102	aaC/aaA																																																																														
RB1	0	MSKCC	GRCh37	13	49033825	49033825	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	G	G	TT			P-0028199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	266	313	0	ENST00000267163.4:c.1962delinsTT	p.Tyr655LeufsTer13	p.Y655Lfs*13	ENST00000267163	NM_000321.2	654	gtG/gtTT																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	298	412	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	511	558	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	773	574	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	212	351	2	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	232	301	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38959898	38959898	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	216	312	0	ENST00000357387.3:c.2034del	p.Lys678AsnfsTer14	p.K678Nfs*14	ENST00000357387	NM_152756.3	678	aaA/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	452	651	3	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157510805	157510806	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	379	525	0	ENST00000346085.5:c.3586dup	p.Gln1196ProfsTer14	p.Q1196Pfs*14	ENST00000346085	NM_020732.3	1194	acc/aCcc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	763	512	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7578202	7578202	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	554	692	0	ENST00000269305.4:c.647T>G	p.Val216Gly	p.V216G	ENST00000269305	NM_001126112.2	216	gTg/gGg																																																																														
RET	0	MSKCC	GRCh37	10	43600609	43600609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	389	572	3	ENST00000355710.3:c.835G>A	p.Ala279Thr	p.A279T	ENST00000355710	NM_020975.4	279	Gcc/Acc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	416	690	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	535	714	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427974	49427974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	450	587	0	ENST00000301067.7:c.10616G>A	p.Arg3539Gln	p.R3539Q	ENST00000301067	NM_003482.3	3539	cGg/cAg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213358	36213359	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	451	840	1	ENST00000222270.7:c.2561_2562del	p.Glu854AlafsTer34	p.E854Afs*34	ENST00000222270	NM_014727.1	852	aAG/a																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	294	402	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023003	27023007	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGA	GGCGA	-			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	23	35	0	ENST00000324856.7:c.113_117del	p.Glu38GlyfsTer71	p.E38Gfs*71	ENST00000324856	NM_006015.4	37	GGCGAg/g																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106727	27106727	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	400	525	0	ENST00000324856.7:c.6341del	p.Pro2114ArgfsTer21	p.P2114Rfs*21	ENST00000324856	NM_006015.4	2113	tCc/tc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720789	89720789	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	18	217	0	ENST00000371953.3:c.940G>T	p.Glu314Ter	p.E314*	ENST00000371953	NM_000314.4	314	Gaa/Taa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948755	71948755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	509	712	2	ENST00000298229.2:c.3470del	p.Gly1157AspfsTer45	p.G1157Dfs*45	ENST00000298229	NM_001567.3	1156	cGg/cg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374279	118374279	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	335	476	0	ENST00000534358.1:c.7674del	p.Thr2559GlnfsTer43	p.T2559Qfs*43	ENST00000534358	NM_005933.3	2558	Ccc/cc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416586	49416586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	374	445	0	ENST00000301067.7:c.16125del	p.Tyr5376ThrfsTer42	p.Y5376Tfs*42	ENST00000301067	NM_003482.3	5375	ccC/cc																																																																														
SLX4	0	MSKCC	GRCh37	16	3633500	3633500	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199969428		P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	463	712	2	ENST00000294008.3:c.4751G>A	p.Arg1584His	p.R1584H	ENST00000294008	NM_032444.2	1584	cGc/cAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47162659	47162659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	282	339	2	ENST00000409792.3:c.3467G>A	p.Arg1156His	p.R1156H	ENST00000409792	NM_014159.6	1156	cGc/cAc																																																																														
KDR	0	MSKCC	GRCh37	4	55948737	55948737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	396	558	1	ENST00000263923.4:c.3728C>T	p.Pro1243Leu	p.P1243L	ENST00000263923	NM_002253.2	1243	cCg/cTg																																																																														
FLT4	0	MSKCC	GRCh37	5	180043387	180043387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	411	593	1	ENST00000261937.6:c.3199G>A	p.Asp1067Asn	p.D1067N	ENST00000261937	NM_182925.4	1067	Gac/Aac																																																																														
FLT4	0	MSKCC	GRCh37	5	180053171	180053171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	481	733	1	ENST00000261937.6:c.1198G>A	p.Ala400Thr	p.A400T	ENST00000261937	NM_182925.4	400	Gcc/Acc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099907	157099907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	411	647	0	ENST00000346085.5:c.844C>A	p.Pro282Thr	p.P282T	ENST00000346085	NM_020732.3	282	Ccc/Acc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845504	151845504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	455	578	2	ENST00000262189.6:c.13508G>A	p.Cys4503Tyr	p.C4503Y	ENST00000262189	NM_170606.2	4503	tGc/tAc																																																																														
LYN	0	MSKCC	GRCh37	8	56864629	56864629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	522	677	0	ENST00000519728.1:c.592C>T	p.Arg198Ter	p.R198*	ENST00000519728	NM_002350.3	198	Cga/Tga																																																																														
RBM10	0	MSKCC	GRCh37	X	47045659	47045659	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	430	621	1	ENST00000329236.7:c.2306A>T	p.Asp769Val	p.D769V	ENST00000329236	NM_001204466.1	769	gAc/gTc																																																																														
STAG2	0	MSKCC	GRCh37	X	123224475	123224475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	458	654	1	ENST00000218089.9:c.3328C>A	p.Leu1110Met	p.L1110M	ENST00000218089	NM_001042749.1	1110	Ctg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	226	564	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	188	521	2	ENST00000269305.4:c.797del	p.Gly266AspfsTer79	p.G266Dfs*79	ENST00000269305	NM_001126112.2	266	gGa/ga																																																																														
ETV1	0	MSKCC	GRCh37	7	13971304	13971304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	213	369	0	ENST00000405192.2:c.625C>T	p.Pro209Ser	p.P209S	ENST00000405192	NM_001163147.1	209	Cct/Tct																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0028202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	88	334	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0028202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	75	491	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	40	397	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	40	397	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	40	397	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
SETD2	0	MSKCC	GRCh37	3	47161862	47161862	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	48	347	0	ENST00000409792.3:c.4264C>T	p.Gln1422Ter	p.Q1422*	ENST00000409792	NM_014159.6	1422	Cag/Tag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830615	72830615	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	89	570	0	ENST00000268489.5:c.5966G>C	p.Gly1989Ala	p.G1989A	ENST00000268489	NM_006885.3	1989	gGc/gCc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	145	469	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0028203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	128	512	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ATM	0	MSKCC	GRCh37	11	108206585	108206585	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	126	357	0	ENST00000278616.4:c.8165del	p.Leu2722ArgfsTer29	p.L2722Rfs*29	ENST00000278616	NM_000051.3	2722	cTg/cg																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665027	138665027	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	50	135	0	ENST00000330315.3:c.538G>C	p.Gly180Arg	p.G180R	ENST00000330315	NM_023067.3	180	Ggc/Cgc																																																																														
KIT	0	MSKCC	GRCh37	4	55569972	55569972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	128	380	0	ENST00000288135.5:c.839C>T	p.Ala280Val	p.A280V	ENST00000288135	NM_000222.2	280	gCg/gTg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153259045	153259046	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0028203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	66	250	0	ENST00000281708.4:c.769_770del	p.Ile257Ter	p.I257*	ENST00000281708	NM_033632.3	257	ATt/t																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0028204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	10	42	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-																																																																														
CASP8	0	MSKCC	GRCh37	2	202149893	202149893	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0028204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	40	418	0	ENST00000358485.4:c.1334C>G	p.Ser445Ter	p.S445*	ENST00000358485	NM_001080125.1	445	tCa/tGa																																																																														
RBM10	0	MSKCC	GRCh37	X	47044713	47044713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	77	335	0	ENST00000329236.7:c.1879G>T	p.Glu627Ter	p.E627*	ENST00000329236	NM_001204466.1	627	Gag/Tag																																																																														
MET	0	MSKCC	GRCh37	7	116411879	116411900	+	splice_region_variant,intron_variant	Splice_Region	DEL	CTCTTTCTTTCTCTCTGTTTTA	CTCTTTCTTTCTCTCTGTTTTA	-			P-0028204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	244	833	0	ENST00000397752.3:c.2888-24_2888-3del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
MDM4	0	MSKCC	GRCh37	1	204512035	204512035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	31	323	0	ENST00000367182.3:c.635C>T	p.Pro212Leu	p.P212L	ENST00000367182	NM_001278516.1	212	cCt/cTt																																																																														
NF1	0	MSKCC	GRCh37	17	29557390	29557390	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	27	176	0	ENST00000358273.4:c.3103A>T	p.Met1035Leu	p.M1035L	ENST00000358273	NM_001042492.2	1035	Atg/Ttg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	187	427	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	268	556	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ATR	0	MSKCC	GRCh37	3	142188397	142188397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	127	331	2	ENST00000350721.4:c.6334C>T	p.Arg2112Cys	p.R2112C	ENST00000350721	NM_001184.3	2112	Cgt/Tgt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	155	317	0	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	165	427	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	165	427	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
STK11	0	MSKCC	GRCh37	19	1220485	1220485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	579	767	0	ENST00000326873.7:c.578C>T	p.Ser193Phe	p.S193F	ENST00000326873	NM_000455.4	193	tCc/tTc																																																																														
HGF	0	MSKCC	GRCh37	7	81392050	81392050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	165	287	0	ENST00000222390.5:c.227G>A	p.Arg76Lys	p.R76K	ENST00000222390	NM_000601.4	76	aGg/aAg																																																																														
WT1	0	MSKCC	GRCh37	11	32414251	32414251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	200	463	2	ENST00000332351.3:c.1300C>T	p.Arg434Cys	p.R434C	ENST00000332351	NM_024426.4	434	Cgt/Tgt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141561	11141561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	232	608	0	ENST00000344626.4:c.3538C>T	p.Pro1180Ser	p.P1180S	ENST00000344626	NM_003072.3	1180	Cct/Tct																																																																														
ROS1	0	MSKCC	GRCh37	6	117681507	117681507	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	137	284	0	ENST00000368508.3:c.3443C>T	p.Ser1148Leu	p.S1148L	ENST00000368508	NM_002944.2	1148	tCa/tTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858687	9858687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	159	378	0	ENST00000330684.3:c.2714C>T	p.Ser905Phe	p.S905F	ENST00000330684	NM_001134407.1	905	tCc/tTc																																																																														
CCND2	0	MSKCC	GRCh37	12	4409108	4409108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	203	467	0	ENST00000261254.3:c.803G>A	p.Gly268Glu	p.G268E	ENST00000261254	NM_001759.3	268	gGa/gAa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36222961	36222961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	591	817	3	ENST00000222270.7:c.5590C>T	p.Arg1864Ter	p.R1864*	ENST00000222270	NM_014727.1	1864	Cga/Tga																																																																														
FLT4	0	MSKCC	GRCh37	5	180057767	180057767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	170	405	1	ENST00000261937.6:c.188G>A	p.Gly63Glu	p.G63E	ENST00000261937	NM_182925.4	63	gGa/gAa																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852154	63852154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	174	481	0	ENST00000279873.7:c.2932C>T	p.Pro978Ser	p.P978S	ENST00000279873	NM_032199.2	978	Cct/Tct																																																																														
FGF4	0	MSKCC	GRCh37	11	69588252	69588252	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1638	122	307	0	ENST00000168712.1:c.446C>T	p.Pro149Leu	p.P149L	ENST00000168712	NM_002007.2	149	cCc/cTc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118372503	118372503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	226	539	0	ENST00000534358.1:c.6436C>T	p.Pro2146Ser	p.P2146S	ENST00000534358	NM_005933.3	2146	Ccc/Tcc																																																																														
ETV6	0	MSKCC	GRCh37	12	12037463	12037463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	185	395	0	ENST00000396373.4:c.1094C>T	p.Ser365Phe	p.S365F	ENST00000396373	NM_001987.4	365	tCc/tTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425230	49425230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199797812		P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	288	688	0	ENST00000301067.7:c.13258C>T	p.Arg4420Trp	p.R4420W	ENST00000301067	NM_003482.3	4420	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445934	49445934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	319	877	0	ENST00000301067.7:c.1532C>T	p.Pro511Leu	p.P511L	ENST00000301067	NM_003482.3	511	cCt/cTt																																																																														
GLI1	0	MSKCC	GRCh37	12	57864513	57864513	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150127797		P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	270	562	1	ENST00000228682.2:c.1990C>T	p.His664Tyr	p.H664Y	ENST00000228682	NM_005269.2	664	Cat/Tat																																																																														
TSC2	0	MSKCC	GRCh37	16	2122859	2122859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	238	553	0	ENST00000219476.3:c.2230C>T	p.Pro744Ser	p.P744S	ENST00000219476	NM_000548.3	744	Cca/Tca																																																																														
ERBB2	0	MSKCC	GRCh37	17	37872613	37872613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	230	722	1	ENST00000269571.5:c.1573C>T	p.Pro525Ser	p.P525S	ENST00000269571		525	Ccc/Tcc																																																																														
ERF	0	MSKCC	GRCh37	19	42753803	42753803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	367	793	0	ENST00000222329.4:c.461C>T	p.Ser154Phe	p.S154F	ENST00000222329	NM_006494.2	154	tCc/tTc																																																																														
CUL3	0	MSKCC	GRCh37	2	225371610	225371610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	217	468	1	ENST00000264414.4:c.994G>A	p.Glu332Lys	p.E332K	ENST00000264414	NM_003590.4	332	Gaa/Aaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9543602	9543602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	220	595	0	ENST00000353224.5:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000353224	NM_177990.2	518	Gag/Aag																																																																														
PAK7	0	MSKCC	GRCh37	20	9546908	9546908	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	180	352	0	ENST00000353224.5:c.1114C>T	p.Gln372Ter	p.Q372*	ENST00000353224	NM_177990.2	372	Cag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	41514567	41514567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	173	404	0	ENST00000373198.4:c.94T>G	p.Cys32Gly	p.C32G	ENST00000373198	NM_133170.3	32	Tgt/Ggt																																																																														
RTEL1	0	MSKCC	GRCh37	20	62320936	62320936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	311	834	0	ENST00000508582.2:c.2032C>T	p.Pro678Ser	p.P678S	ENST00000508582		678	Ccc/Tcc																																																																														
RAF1	0	MSKCC	GRCh37	3	12641222	12641222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	225	456	0	ENST00000251849.4:c.1076C>T	p.Ser359Phe	p.S359F	ENST00000251849	NM_002880.3	359	tCt/tTt																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182679097	182679097	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	190	487	0	ENST00000292782.4:c.437A>T	p.Gln146Leu	p.Q146L	ENST00000292782	NM_020640.2	146	cAa/cTa																																																																														
KDR	0	MSKCC	GRCh37	4	55964361	55964361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	190	463	1	ENST00000263923.4:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000263923	NM_002253.2	818	Gaa/Aaa																																																																														
DROSHA	0	MSKCC	GRCh37	5	31466348	31466349	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	236	721	0	ENST00000344624.3:c.2406_2407delinsTT	p.Leu803Phe	p.L803F	ENST00000344624		802	caCCtc/caTTtc																																																																														
PARK2	0	MSKCC	GRCh37	6	161771212	161771213	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	179	494	1	ENST00000366898.1:c.1316_1317delinsTT	p.Pro439Leu	p.P439L	ENST00000366898	NM_004562.2	439	cCC/cTT																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740618	145740618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	261	645	0	ENST00000428558.2:c.1399G>A	p.Ala467Thr	p.A467T	ENST00000428558	NM_004260.3	467	Gct/Act																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	126	455	1				ENST00000310581	NM_198253.2																																																																																
STK11	0	MSKCC	GRCh37	19	1207009	1207009	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	109	646	2	ENST00000326873.7:c.97G>T	p.Glu33Ter	p.E33*	ENST00000326873	NM_000455.4	33	Gag/Tag																																																																														
HLA-B	0	MSKCC	GRCh37	6	31322925	31322925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	147	819	0	ENST00000412585.2:c.971G>A	p.Gly324Glu	p.G324E	ENST00000412585	NM_005514.6	324	gGa/gAa																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724694	112724694	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	108	460	0	ENST00000369452.4:c.578C>G	p.Ser193Cys	p.S193C	ENST00000369452	NM_007373.3	193	tCt/tGt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18641494	18641494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	54	442	0	ENST00000266497.5:c.2493G>T	p.Glu831Asp	p.E831D	ENST00000266497		831	gaG/gaT																																																																														
FOXO1	0	MSKCC	GRCh37	13	41240240	41240240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	44	296	0	ENST00000379561.5:c.110C>A	p.Ser37Ter	p.S37*	ENST00000379561	NM_002015.3	37	tCg/tAg																																																																														
RB1	0	MSKCC	GRCh37	13	49051507	49051507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	49	371	0	ENST00000267163.4:c.2680G>C	p.Glu894Gln	p.E894Q	ENST00000267163	NM_000321.2	894	Gag/Cag																																																																														
FAM175A	0	MSKCC	GRCh37	4	84384682	84384682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	86	452	0	ENST00000321945.7:c.761T>C	p.Ile254Thr	p.I254T	ENST00000321945	NM_139076.2	254	aTt/aCt																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323201	31323201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	103	589	0	ENST00000412585.2:c.788G>A	p.Arg263Lys	p.R263K	ENST00000412585	NM_005514.6	263	aGa/aAa																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323216	31323216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	109	536	2	ENST00000412585.2:c.773G>A	p.Arg258Lys	p.R258K	ENST00000412585	NM_005514.6	258	aGa/aAa																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323283	31323283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	51	151	0	ENST00000412585.2:c.706G>A	p.Glu236Lys	p.E236K	ENST00000412585	NM_005514.6	236	Gag/Aag																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965616	93965616	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	71	473	0	ENST00000369303.4:c.2312T>A	p.Val771Asp	p.V771D	ENST00000369303	NM_004440.3	771	gTt/gAt																																																																														
BAP1	0	MSKCC	GRCh37	3	52438527	52438527	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	185	562	0	ENST00000460680.1:c.1192G>T	p.Glu398Ter	p.E398*	ENST00000460680	NM_004656.3	398	Gag/Tag																																																																														
SOX17	0	MSKCC	GRCh37	8	55372175	55372175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	108	311	0	ENST00000297316.4:c.865C>A	p.Pro289Thr	p.P289T	ENST00000297316	NM_022454.3	289	Cca/Aca																																																																														
CDH1	0	MSKCC	GRCh37	16	68857353	68857353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	49	595	1	ENST00000261769.5:c.1988A>G	p.Tyr663Cys	p.Y663C	ENST00000261769	NM_004360.3	663	tAc/tGc																																																																														
STK11	0	MSKCC	GRCh37	19	1221990	1221990	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	138	615	0	ENST00000326873.7:c.905A>C	p.Gln302Pro	p.Q302P	ENST00000326873	NM_000455.4	302	cAg/cCg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610222	10610222	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	210	871	0	ENST00000171111.5:c.488A>T	p.Gln163Leu	p.Q163L	ENST00000171111	NM_203500.1	163	cAg/cTg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528599	89528599	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	36	322	0	ENST00000336596.2:c.2899A>C	p.Ser967Arg	p.S967R	ENST00000336596	NM_005233.5	967	Agt/Cgt																																																																														
HIST1H3A	0	MSKCC	GRCh37	6	26020818	26020818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	130	322	0	ENST00000357647.3:c.101G>A	p.Gly34Asp	p.G34D	ENST00000357647	NM_003529.2	34	gGc/gAc																																																																														
DDR2	0	MSKCC	GRCh37	1	162725009	162725009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	183	375	0	ENST00000367921.3:c.481G>T	p.Ala161Ser	p.A161S	ENST00000367921	NM_006182.2	161	Gcc/Tcc																																																																														
NUF2	0	MSKCC	GRCh37	1	163298025	163298025	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	81	451	1	ENST00000271452.3:c.206T>A	p.Val69Glu	p.V69E	ENST00000271452	NM_145697.2	69	gTg/gAg																																																																														
TBX3	0	MSKCC	GRCh37	12	115110028	115110028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	358	596	1	ENST00000257566.3:c.1850C>A	p.Ala617Glu	p.A617E	ENST00000257566	NM_016569.3	617	gCg/gAg																																																																														
LATS2	0	MSKCC	GRCh37	13	21562758	21562758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	261	343	0	ENST00000382592.4:c.1161G>T	p.Glu387Asp	p.E387D	ENST00000382592	NM_014572.2	387	gaG/gaT																																																																														
MGA	0	MSKCC	GRCh37	15	42052623	42052623	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	231	431	0	ENST00000219905.7:c.7294G>T	p.Glu2432Ter	p.E2432*	ENST00000219905	NM_001164273.1	2432	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577541	7577562	+	frameshift_variant	Frame_Shift_Del	DEL	TTCATGCCGCCCATGCAGGAAC	TTCATGCCGCCCATGCAGGAAC	-			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	397	507	0	ENST00000269305.4:c.719_740del	p.Ser240ThrfsTer98	p.S240Tfs*98	ENST00000269305	NM_001126112.2	240	aGTTCCTGCATGGGCGGCATGAAc/ac																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984779	11984779	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	86	365	0	ENST00000353533.5:c.325G>T	p.Gly109Ter	p.G109*	ENST00000353533	NM_003010.3	109	Gga/Tga																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132501	11132501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	346	577	0	ENST00000344626.4:c.2717G>T	p.Arg906Leu	p.R906L	ENST00000344626	NM_003072.3	906	cGc/cTc																																																																														
POLD1	0	MSKCC	GRCh37	19	50919979	50919979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	254	490	0	ENST00000440232.2:c.3066G>T	p.Gln1022His	p.Q1022H	ENST00000440232	NM_002691.3	1022	caG/caT																																																																														
INPP4A	0	MSKCC	GRCh37	2	99169353	99169353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	254	395	0	ENST00000074304.5:c.1283A>G	p.Tyr428Cys	p.Y428C	ENST00000074304	NM_001134224.1	428	tAc/tGc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127565	55127565	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	82	295	0	ENST00000257290.5:c.353A>T	p.Tyr118Phe	p.Y118F	ENST00000257290	NM_006206.4	118	tAc/tTc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31435915	31435915	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	289	457	0	ENST00000344624.3:c.2999G>C	p.Arg1000Pro	p.R1000P	ENST00000344624		1000	cGg/cCg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67592114	67592114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	143	247	0	ENST00000274335.5:c.1930G>T	p.Gly644Cys	p.G644C	ENST00000274335		644	Ggc/Tgc																																																																														
BRAF	0	MSKCC	GRCh37	7	140476813	140476813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	232	458	0	ENST00000288602.6:c.1593G>T	p.Trp531Cys	p.W531C	ENST00000288602	NM_004333.4	531	tgG/tgT																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981906	70981906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	484	583	1	ENST00000276594.2:c.190C>T	p.Pro64Ser	p.P64S	ENST00000276594	NM_024504.3	64	Ccc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7579397	7579397	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	290	768	1	ENST00000269305.4:c.290T>A	p.Val97Asp	p.V97D	ENST00000269305	NM_001126112.2	97	gTc/gAc																																																																														
STK11	0	MSKCC	GRCh37	19	1221946	1221946	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0028245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	316	684	0	ENST00000326873.7:c.863-2A>T		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																															
PBRM1	0	MSKCC	GRCh37	3	52597902	52598110	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTATGAAGTCTTTCCTTTAATCTTTAAGTGAATAAATATTTTCTATTTGAAATATTTACTACTCTAGTTTAAGATCTAATAAAAAATTAAAAACACTGGACTACACTATGTTGCTATCAGTTAATGGAAGTGCTCTTTTTTCCTTAAGTTTTTCAAGCTTTACCTGAAGTAGTAAATTTCATCATCTACCACTTTAGCAGAGAGTGAA	ATTATGAAGTCTTTCCTTTAATCTTTAAGTGAATAAATATTTTCTATTTGAAATATTTACTACTCTAGTTTAAGATCTAATAAAAAATTAAAAACACTGGACTACACTATGTTGCTATCAGTTAATGGAAGTGCTCTTTTTTCCTTAAGTTTTTCAAGCTTTACCTGAAGTAGTAAATTTCATCATCTACCACTTTAGCAGAGAGTGAA	-			P-0028245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	132	74	0	ENST00000394830.3:c.3756_3800+164del		p.X1252_splice	ENST00000394830	NM_018313.4	1252																																																																															
RASA1	0	MSKCC	GRCh37	5	86659320	86659320	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0028245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	54	199	0	ENST00000274376.6:c.1609A>G	p.Arg537Gly	p.R537G	ENST00000274376	NM_002890.2	537	Agg/Ggg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349851	89349888	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGGATTTCTCTTTGTATCTTTCTGGTTTTGTCTTCT	ACTGGATTTCTCTTTGTATCTTTCTGGTTTTGTCTTCT	C			P-0028245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	188	730	1	ENST00000301030.4:c.3062_3099delinsG	p.Glu1021GlyfsTer285	p.E1021Gfs*285	ENST00000301030	NM_001256183.1	1021	gAGAAGACAAAACCAGAAAGATACAAAGAGAAATCCAGT/gG																																																																														
KEAP1	0	MSKCC	GRCh37	19	10597407	10597413	+	protein_altering_variant	In_Frame_Del	DEL	GATGTCA	GATGTCA	T			P-0028245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	308	811	0	ENST00000171111.5:c.1790_1796delinsA	p.Met597_Ser599delinsLys	p.M597_S599delinsK	ENST00000171111	NM_203500.1	597	aTGACATCg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	85	342	1				ENST00000310581	NM_198253.2																																																																																
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	46	350	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097670	27097670	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	164	667	0	ENST00000324856.7:c.3259del	p.Ser1087ValfsTer6	p.S1087Vfs*6	ENST00000324856	NM_006015.4	1087	Agt/gt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528581	89528581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	97	311	0	ENST00000336596.2:c.2881C>A	p.Pro961Thr	p.P961T	ENST00000336596	NM_005233.5	961	Cca/Aca																																																																														
AMER1	0	MSKCC	GRCh37	X	63413151	63413151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	138	308	0	ENST00000330258.3:c.16G>T	p.Asp6Tyr	p.D6Y	ENST00000330258	NM_152424.3	6	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	156	612	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	122	581	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	42	303	0	ENST00000342988.3:c.1477G>A	p.Asp493Asn	p.D493N	ENST00000342988	NM_005359.5	493	Gat/Aat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991602	72991602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	59	610	0	ENST00000268489.5:c.2443G>A	p.Val815Met	p.V815M	ENST00000268489	NM_006885.3	815	Gtg/Atg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16041505	16041505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	89	325	0	ENST00000268712.3:c.1374C>G	p.Asn458Lys	p.N458K	ENST00000268712	NM_006311.3	458	aaC/aaG																																																																														
RYBP	0	MSKCC	GRCh37	3	72495721	72495721	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	111	424	0	ENST00000477973.2:c.349C>G	p.Ser117Arg	p.S117R	ENST00000477973	NM_012234.5	117	agC/agG																																																																														
APC	0	MSKCC	GRCh37	5	112175760	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	31	345	0	ENST00000257430.4:c.4469del	p.His1490LeufsTer17	p.H1490Lfs*17	ENST00000257430	NM_000038.5	1490	cAt/ct																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	143	694	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0028248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	41	448	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	57	309	2	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
INHBA	0	MSKCC	GRCh37	7	41729844	41729844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	30	293	1	ENST00000242208.4:c.685C>T	p.Arg229Trp	p.R229W	ENST00000242208	NM_002192.2	229	Cgg/Tgg																																																																														
CDK8	0	MSKCC	GRCh37	13	26828882	26828882	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	72	363	0	ENST00000381527.3:c.104T>G	p.Val35Gly	p.V35G	ENST00000381527	NM_001260.1	35	gTc/gGc																																																																														
SOX9	0	MSKCC	GRCh37	17	70119671	70119694	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTATTGTCCACAGGGCAATCCCAG	TTATTGTCCACAGGGCAATCCCAG	-			P-0028248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	49	515	1	ENST00000245479.2:c.686-13_696del		p.X229_splice	ENST00000245479	NM_000346.3	229																																																																															
SETD2	0	MSKCC	GRCh37	3	47163469	47163469	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	32	259	0	ENST00000409792.3:c.2657T>G	p.Leu886Arg	p.L886R	ENST00000409792	NM_014159.6	886	cTt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	37	515	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225591	26225591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	96	466	0	ENST00000360408.1:c.209G>A	p.Arg70His	p.R70H	ENST00000360408	NM_003532.2	70	cGc/cAc																																																																														
PPARG	0	MSKCC	GRCh37	3	12475550	12475550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	42	535	3	ENST00000287820.6:c.1424C>T	p.Thr475Met	p.T475M	ENST00000287820	NM_015869.4	475	aCg/aTg																																																																														
ATM	0	MSKCC	GRCh37	11	108202630	108202630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	40	404	0	ENST00000278616.4:c.7654C>T	p.His2552Tyr	p.H2552Y	ENST00000278616	NM_000051.3	2552	Cac/Tac																																																																														
FLT1	0	MSKCC	GRCh37	13	29001429	29001429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	41	311	0	ENST00000282397.4:c.1303G>A	p.Val435Met	p.V435M	ENST00000282397	NM_002019.4	435	Gtg/Atg																																																																														
RB1	0	MSKCC	GRCh37	13	49027225	49027226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0028249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	53	518	0	ENST00000267163.4:c.1794_1795dup	p.Asn599IlefsTer13	p.N599Ifs*13	ENST00000267163	NM_000321.2	598	aat/aATat																																																																														
TP53	0	MSKCC	GRCh37	17	7574002	7574002	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	366	659	0	ENST00000269305.4:c.1025delG	p.Arg342GlnfsTer3	p.R342Qfs*3	ENST00000269305	NM_001126112.2	342	cGa/ca																																																																														
RB1	0	MSKCC	GRCh37	13	48919244	48919245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	86	188	0	ENST00000267163.4:c.412dup	p.Ile138AsnfsTer2	p.I138Nfs*2	ENST00000267163	NM_000321.2	137	gaa/gAaa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62319047	62319047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1331	333	696	0	ENST00000508582.2:c.1477C>T	p.Arg493Cys	p.R493C	ENST00000508582		493	Cgc/Tgc																																																																														
STK19	0	MSKCC	GRCh37	6	31940531	31940531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	266	452	0	ENST00000375331.2:c.564G>C	p.Gln188His	p.Q188H	ENST00000375331	NM_004197.1	188	caG/caC																																																																														
PARK2	0	MSKCC	GRCh37	6	161969918	161969918	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	599	499	0	ENST00000366898.1:c.1051A>C	p.Thr351Pro	p.T351P	ENST00000366898	NM_004562.2	351	Acc/Ccc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43772110	43772110	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	61	690	0	ENST00000382044.4:c.605C>A	p.Ser202Ter	p.S202*	ENST00000382044	NM_001141980.1	202	tCa/tAa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63534386	63534386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1204	69	799	0	ENST00000307078.5:c.1135G>C	p.Glu379Gln	p.E379Q	ENST00000307078	NM_004655.3	379	Gaa/Caa																																																																														
TP53	0	MSKCC	GRCh37	17	7579329	7579329	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	193	646	0	ENST00000269305.4:c.358A>T	p.Lys120Ter	p.K120*	ENST00000269305	NM_001126112.2	120	Aag/Tag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210689	2210691	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0028256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	60	773	0	ENST00000398665.3:c.1192_1194del	p.Lys398del	p.K398del	ENST00000398665	NM_032482.2	396	AAG/-																																																																														
TOP1	0	MSKCC	GRCh37	20	39744996	39744996	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	115	554	2	ENST00000361337.2:c.1786A>T	p.Ile596Phe	p.I596F	ENST00000361337	NM_003286.2	596	Atc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	264	619	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0028257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	107	464	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
ATM	0	MSKCC	GRCh37	11	108172408	108172409	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	213	403	0	ENST00000278616.4:c.5216dup	p.Asn1739LysfsTer10	p.N1739Kfs*10	ENST00000278616	NM_000051.3	1737	-/A																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10273938	10273938	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	210	805	2	ENST00000330684.3:c.331C>T	p.Gln111Ter	p.Q111*	ENST00000330684	NM_001134407.1	111	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	72	393	0				ENST00000310581	NM_198253.2																																																																																
VHL	0	MSKCC	GRCh37	3	10183797	10183797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	98	649	1	ENST00000256474.2:c.266T>A	p.Leu89His	p.L89H	ENST00000256474	NM_000551.3	89	cTc/cAc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710670	114710670	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0028261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	120	475	0	ENST00000543371.1:c.155C>G	p.Ser52Ter	p.S52*	ENST00000543371	NM_001198531.1	52	tCa/tGa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118348882	118348882	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	173	235	0	ENST00000534358.1:c.3535T>G	p.Phe1179Val	p.F1179V	ENST00000534358	NM_005933.3	1179	Ttt/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0028261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	399	791	2	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0028261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	123	350	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
PARK2	0	MSKCC	GRCh37	6	162864377	162864377	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75860381		P-0028261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	91	428	0	ENST00000366898.1:c.136G>A	p.Ala46Thr	p.A46T	ENST00000366898	NM_004562.2	46	Gca/Aca																																																																														
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	530	742	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
ARAF	0	MSKCC	GRCh37	X	47426106	47426106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	188	699	2	ENST00000377045.4:c.626G>A	p.Arg209His	p.R209H	ENST00000377045	NM_001654.4	209	cGc/cAc																																																																														
TERT	0	MSKCC	GRCh37	5	1282703	1282703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	166	597	0	ENST00000310581.5:c.1610G>A	p.Arg537His	p.R537H	ENST00000310581	NM_198253.2	537	cGt/cAt																																																																														
RB1	0	MSKCC	GRCh37	13	48916834	48916834	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	175	448	0	ENST00000267163.4:c.368delA	p.Asn123ThrfsTer2	p.N123Tfs*2	ENST00000267163	NM_000321.2	122	Aaa/aa																																																																														
ATRX	0	MSKCC	GRCh37	X	76938156	76938190	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTTGATTATCCATTCCTTTTTTGCTGTGTTTCT	CCCTTGATTATCCATTCCTTTTTTGCTGTGTTTCT	-			P-0028331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	212	627	0	ENST00000373344.5:c.2558_2592del	p.Glu853AlafsTer13	p.E853Afs*13	ENST00000373344	NM_000489.3	853	gAGAAACACAGCAAAAAAGGAATGGATAATCAAGGG/g																																																																														
MLL3	0	MSKCC	GRCh37	7	151874945	151874945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	268	401	0	ENST00000262189.6:c.7593G>A	p.Met2531Ile	p.M2531I	ENST00000262189	NM_170606.2	2531	atG/atA																																																																														
FGFR2	0	MSKCC	GRCh37	10	123239387	123239387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000181-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	74	291	0	ENST00000358487.5:c.2450G>A	p.Gly817Asp	p.G817D	ENST00000358487	NM_000141.4	817	gGc/gAc																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988540	36988540	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000181-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1564	84	637	0	ENST00000354822.5:c.113C>G	p.Thr38Arg	p.T38R	ENST00000354822	NM_001079668.2	38	aCg/aGg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16056663	16056663	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000181-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1571	105	654	0	ENST00000268712.3:c.779A>T	p.Lys260Ile	p.K260I	ENST00000268712	NM_006311.3	260	aAa/aTa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15278176	15278176	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	15	451	0	ENST00000263388.2:c.5246A>T	p.Gln1749Leu	p.Q1749L	ENST00000263388	NM_000435.2	1749	cAg/cTg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16075191	16075192	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0000287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			115	50	244	0	ENST00000268712.3:c.360_361delGCinsTT	p.GlnArg120HisCys	p.QR120HC	ENST00000268712	NM_006311.3	120	caGCgt/caTTgt																																																																														
JAK1	0	MSKCC	GRCh37	1	65323365	65323365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000443-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	154	354	0	ENST00000342505.4:c.1432A>G	p.Thr478Ala	p.T478A	ENST00000342505	NM_002227.2	478	Acc/Gcc																																																																														
IKBKE	0	MSKCC	GRCh37	1	206666409	206666409	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000443-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	147	406	1	ENST00000367119.1:c.125G>T	p.Gly42Val	p.G42V	ENST00000367119		42	gGc/gTc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520413	176520413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000443-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	137	434	0	ENST00000292408.4:c.1258C>A	p.Leu420Met	p.L420M	ENST00000292408	NM_213647.1	420	Ctg/Atg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164654	36164654	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000443-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			895	201	489	1	ENST00000300305.3:c.1221C>A	p.Tyr407Ter	p.Y407*	ENST00000300305		407	taC/taA																																																																														
AXIN1	0	MSKCC	GRCh37	16	347814	347814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000450-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	86	442	0	ENST00000262320.3:c.1692G>A	p.Trp564Ter	p.W564*	ENST00000262320	NM_003502.3	564	tgG/tgA																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11105612	11105612	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000450-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	39	332	0	ENST00000344626.4:c.1528A>G	p.Asn510Asp	p.N510D	ENST00000344626	NM_003072.3	510	Aac/Gac																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9770548	9770548	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000456-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			762	71	493	0	ENST00000377346.4:c.35G>A	p.Trp12Ter	p.W12*	ENST00000377346	NM_005026.3	12	tGg/tAg																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794784	242794784	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000456-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	35	207	0	ENST00000334409.5:c.425T>C	p.Leu142Pro	p.L142P	ENST00000334409	NM_005018.2	142	cTc/cCc																																																																														
FLT3	0	MSKCC	GRCh37	13	28602333	28602333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000456-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			819	75	431	0	ENST00000241453.7:c.2035G>A	p.Gly679Arg	p.G679R	ENST00000241453	NM_004119.2	679	Ggg/Agg																																																																														
STAG2	0	MSKCC	GRCh37	X	123179194	123179194	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000456-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	65	213	0	ENST00000218089.9:c.643T>G	p.Phe215Val	p.F215V	ENST00000218089	NM_001042749.1	215	Ttt/Gtt																																																																														
FGF19	0	MSKCC	GRCh37	11	69514159	69514160	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0000456-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	51	429	0	ENST00000294312.3:c.521_522delAGinsGT	p.Glu174Gly	p.E174G	ENST00000294312	NM_005117.2	174	gAG/gGT																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000650-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	292	231	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000650-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	60	116	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ERCC4	0	MSKCC	GRCh37	16	14024674	14024674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000650-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1177	256	562	0	ENST00000311895.7:c.900G>C	p.Gln300His	p.Q300H	ENST00000311895	NM_005236.2	300	caG/caC																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178938923	178938925	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0000650-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	28	92	0	ENST00000263967.3:c.2170_2172delAAG	p.Lys724del	p.K724del	ENST00000263967	NM_006218.2	722	gAGAag/gag																																																																														
FLT1	0	MSKCC	GRCh37	13	28877347	28877347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	83	175	0	ENST00000282397.4:c.3974C>G	p.Pro1325Arg	p.P1325R	ENST00000282397	NM_002019.4	1325	cCa/cGa																																																																														
CRKL	0	MSKCC	GRCh37	22	21304024	21304024	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1641	134	335	0	ENST00000354336.3:c.803G>C	p.Arg268Thr	p.R268T	ENST00000354336	NM_005207.3	268	aGg/aCg																																																																														
FAT1	0	MSKCC	GRCh37	4	187539120	187539120	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	32	320	0	ENST00000441802.2:c.8620G>T	p.Glu2874Ter	p.E2874*	ENST00000441802	NM_005245.3	2874	Gaa/Taa																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540249	23540249	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000685-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	68	102	0	ENST00000380871.4:c.154C>A	p.Arg52Ser	p.R52S	ENST00000380871	NM_006167.3	52	Cgc/Agc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467633	50467633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000707-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	21	126	0	ENST00000331340.3:c.868G>A	p.Asp290Asn	p.D290N	ENST00000331340	NM_006060.4	290	Gac/Aac																																																																														
MLL	0	MSKCC	GRCh37	11	118360551	118360551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000707-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	85	401	0	ENST00000534358.1:c.4524G>C	p.Glu1508Asp	p.E1508D	ENST00000534358	NM_005933.3	1508	gaG/gaC																																																																														
DDR2	0	MSKCC	GRCh37	1	162745479	162745479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000747-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	49	366	0	ENST00000367921.3:c.1894C>A	p.Leu632Ile	p.L632I	ENST00000367921	NM_006182.2	632	Ctc/Atc																																																																														
MDC1	0	MSKCC	GRCh37	6	30675945	30675945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000747-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	90	590	0	ENST00000376406.3:c.2411G>T	p.Gly804Val	p.G804V	ENST00000376406	NM_014641.2	804	gGc/gTc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0000782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	541	344	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157150521	157150521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	166	158	0	ENST00000346085.5:c.1703G>A	p.Gly568Glu	p.G568E	ENST00000346085	NM_020732.3	568	gGg/gAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593389	48593389	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0000992-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	56	149	0	ENST00000342988.3:c.1140G>T	p.Arg380Ser	p.R380S	ENST00000342988	NM_005359.5	380	agG/agT																																																																														
RAC1	0	MSKCC	GRCh37	7	6431628	6431628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001004-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	81	337	0	ENST00000356142.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000356142	NM_018890.3	61	Caa/Aaa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3843461	3843461	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001009-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			772	80	366	0	ENST00000262367.5:c.1142C>A	p.Ser381Ter	p.S381*	ENST00000262367	NM_004380.2	381	tCg/tAg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15973548	15973548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001009-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			580	52	273	0	ENST00000268712.3:c.4444C>T	p.Arg1482Trp	p.R1482W	ENST00000268712	NM_006311.3	1482	Cgg/Tgg																																																																														
NF1	0	MSKCC	GRCh37	17	29546022	29546022	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0001009-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			574	43	200	0	ENST00000358273.4:c.1528-1G>C		p.X510_splice	ENST00000358273	NM_001042492.2	510																																																																															
ARID1B	0	MSKCC	GRCh37	6	157527496	157527504	+	inframe_deletion	In_Frame_Del	DEL	GACGAGGAA	GACGAGGAA	-			P-0001009-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	38	256	0	ENST00000346085.5:c.5229_5237delAGACGAGGA	p.Asp1747_Glu1749del	p.D1747_E1749del	ENST00000346085	NM_020732.3	1741	GACGAGGAA/-																																																																														
TP63	0	MSKCC	GRCh37	3	189586454	189586454	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	30	203	0	ENST00000264731.3:c.1078A>G	p.Arg360Gly	p.R360G	ENST00000264731	NM_003722.4	360	Aga/Gga																																																																														
FAT1	0	MSKCC	GRCh37	4	187549797	187549797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			686	56	521	0	ENST00000441802.2:c.4444G>T	p.Asp1482Tyr	p.D1482Y	ENST00000441802	NM_005245.3	1482	Gat/Tat																																																																														
MLL3	0	MSKCC	GRCh37	7	151853311	151853311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1469	104	327	0	ENST00000262189.6:c.11791G>A	p.Gly3931Arg	p.G3931R	ENST00000262189	NM_170606.2	3931	Gga/Aga																																																																														
POLE	0	MSKCC	GRCh37	12	133220506	133220506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	130	354	0	ENST00000320574.5:c.4207C>A	p.Pro1403Thr	p.P1403T	ENST00000320574	NM_006231.2	1403	Cca/Aca																																																																														
RARA	0	MSKCC	GRCh37	17	38506167	38506167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	113	253	0	ENST00000254066.5:c.459G>A	p.Met153Ile	p.M153I	ENST00000254066	NM_000964.3	153	atG/atA																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222736	5222736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	56	138	0	ENST00000357368.4:c.3067C>T	p.Pro1023Ser	p.P1023S	ENST00000357368	NM_002850.3	1023	Ccc/Tcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	584	658	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	243	529	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
MTOR	0	MSKCC	GRCh37	1	11294284	11294284	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	307	627	0	ENST00000361445.4:c.2247C>G	p.Ile749Met	p.I749M	ENST00000361445	NM_004958.3	749	atC/atG																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120506320	120506320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			76	270	512	1	ENST00000256646.2:c.1792G>A	p.Gly598Arg	p.G598R	ENST00000256646	NM_024408.3	598	Ggg/Agg																																																																														
DDR2	0	MSKCC	GRCh37	1	162746102	162746102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	213	372	1	ENST00000367921.3:c.2225G>A	p.Arg742Gln	p.R742Q	ENST00000367921	NM_006182.2	742	cGg/cAg																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67202152	67202152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	227	648	1	ENST00000312629.5:c.1255C>T	p.Arg419Trp	p.R419W	ENST00000312629	NM_003952.2	419	Cgg/Tgg																																																																														
AXL	0	MSKCC	GRCh37	19	41748815	41748815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			758	396	867	2	ENST00000301178.4:c.1340C>T	p.Ser447Leu	p.S447L	ENST00000301178	NM_021913.4	447	tCg/tTg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45855588	45855588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			657	455	696	2	ENST00000391945.4:c.2069G>T	p.Arg690Leu	p.R690L	ENST00000391945	NM_000400.3	690	cGg/cTg																																																																														
AKT2	0	MSKCC	GRCh37	19	40761077	40761077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	73	615	0	ENST00000392038.2:c.275C>T	p.Ser92Phe	p.S92F	ENST00000392038	NM_001626.4	92	tCt/tTt																																																																														
PRKD1	0	MSKCC	GRCh37	14	30396541	30396541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			61	411	570	0	ENST00000331968.5:c.178G>A	p.Glu60Lys	p.E60K	ENST00000331968	NM_002742.2	60	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105937	27105937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			578	75	528	0	ENST00000324856.7:c.5548G>T	p.Asp1850Tyr	p.D1850Y	ENST00000324856	NM_006015.4	1850	Gac/Tac																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120465282	120465282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	23	424	0	ENST00000256646.2:c.4979C>T	p.Ser1660Leu	p.S1660L	ENST00000256646	NM_024408.3	1660	tCa/tTa																																																																														
LATS2	0	MSKCC	GRCh37	13	21549260	21549260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			665	56	817	0	ENST00000382592.4:c.3016G>A	p.Asp1006Asn	p.D1006N	ENST00000382592	NM_014572.2	1006	Gat/Aat																																																																														
SOCS1	0	MSKCC	GRCh37	16	11348771	11348771	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	122	488	0	ENST00000332029.2:c.565G>C	p.Glu189Gln	p.E189Q	ENST00000332029	NM_003745.1	189	Gag/Cag																																																																														
ERCC4	0	MSKCC	GRCh37	16	14038581	14038581	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	134	472	0	ENST00000311895.7:c.1906G>T	p.Glu636Ter	p.E636*	ENST00000311895	NM_005236.2	636	Gaa/Taa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41201157	41201157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			548	194	825	0	ENST00000357654.3:c.5387C>T	p.Ser1796Leu	p.S1796L	ENST00000357654	NM_007294.3	1796	tCa/tTa																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470018	25470018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			591	32	472	0	ENST00000264709.3:c.1024G>C	p.Glu342Gln	p.E342Q	ENST00000264709	NM_175629.2	342	Gag/Cag																																																																														
ASXL1	0	MSKCC	GRCh37	20	31016048	31016048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			965	51	613	2	ENST00000375687.4:c.370G>A	p.Asp124Asn	p.D124N	ENST00000375687	NM_015338.5	124	Gat/Aat																																																																														
PPARG	0	MSKCC	GRCh37	3	12458223	12458223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			493	45	521	2	ENST00000287820.6:c.840G>T	p.Met280Ile	p.M280I	ENST00000287820	NM_015869.4	280	atG/atT																																																																														
TET2	0	MSKCC	GRCh37	4	106190870	106190870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	38	455	0	ENST00000380013.4:c.4148G>A	p.Arg1383Lys	p.R1383K	ENST00000380013	NM_001127208.2	1383	aGa/aAa																																																																														
RASA1	0	MSKCC	GRCh37	5	86674215	86674215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	24	342	0	ENST00000274376.6:c.2347G>A	p.Glu783Lys	p.E783K	ENST00000274376	NM_002890.2	783	Gaa/Aaa																																																																														
RAD21	0	MSKCC	GRCh37	8	117864854	117864854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			664	73	626	1	ENST00000297338.2:c.1255G>A	p.Glu419Lys	p.E419K	ENST00000297338	NM_006265.2	419	Gaa/Aaa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399817	139399817	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006682-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			730	257	840	0	ENST00000277541.6:c.4531T>A	p.Ser1511Thr	p.S1511T	ENST00000277541	NM_017617.3	1511	Tca/Aca																																																																														
APC	0	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	334	525	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																														
SDHB	0	MSKCC	GRCh37	1	17380487	17380487	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	49	548	0	ENST00000375499.3:c.28A>T	p.Arg10Trp	p.R10W	ENST00000375499	NM_003000.2	10	Agg/Tgg																																																																														
SOX2	0	MSKCC	GRCh37	3	181430454	181430454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	223	748	2	ENST00000325404.1:c.306G>A	p.Met102Ile	p.M102I	ENST00000325404	NM_003106.3	102	atG/atA																																																																														
GLI1	0	MSKCC	GRCh37	12	57864883	57864883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	197	713	0	ENST00000228682.2:c.2360C>T	p.Ser787Phe	p.S787F	ENST00000228682	NM_005269.2	787	tCt/tTt																																																																														
ARAF	0	MSKCC	GRCh37	X	47426645	47426645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	171	317	3	ENST00000377045.4:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000377045	NM_001654.4	297	cGg/cAg																																																																														
JUN	0	MSKCC	GRCh37	1	59248709	59248709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	280	771	1	ENST00000371222.2:c.34G>A	p.Asp12Asn	p.D12N	ENST00000371222	NM_002228.3	12	Gat/Aat																																																																														
KMT2A	0	MSKCC	GRCh37	11	118390368	118390368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			898	111	705	2	ENST00000534358.1:c.11182G>A	p.Asp3728Asn	p.D3728N	ENST00000534358	NM_005933.3	3728	Gat/Aat																																																																														
ARID2	0	MSKCC	GRCh37	12	46233144	46233144	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	117	447	1	ENST00000334344.6:c.1363C>T	p.Gln455Ter	p.Q455*	ENST00000334344	NM_152641.2	455	Cag/Tag																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885224	111885224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			730	53	688	1	ENST00000341259.2:c.1112G>A	p.Arg371Lys	p.R371K	ENST00000341259	NM_005475.2	371	aGa/aAa																																																																														
PPM1D	0	MSKCC	GRCh37	17	58677989	58677989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	94	344	0	ENST00000305921.3:c.214G>T	p.Ala72Ser	p.A72S	ENST00000305921	NM_003620.3	72	Gcc/Tcc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59885931	59885931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			764	196	701	0	ENST00000259008.2:c.815C>T	p.Pro272Leu	p.P272L	ENST00000259008	NM_032043.2	272	cCa/cTa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554240	63554240	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			759	219	803	0	ENST00000307078.5:c.499G>C	p.Asp167His	p.D167H	ENST00000307078	NM_004655.3	167	Gat/Cat																																																																														
YES1	0	MSKCC	GRCh37	18	743012	743012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			4426	8981	691	9	ENST00000314574.4:c.966G>T	p.Gln322His	p.Q322H	ENST00000314574	NM_005433.3	322	caG/caT																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	128	364	1	ENST00000342988.3:c.1477G>T	p.Asp493Tyr	p.D493Y	ENST00000342988	NM_005359.5	493	Gat/Tat																																																																														
BBC3	0	MSKCC	GRCh37	19	47735850	47735850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	76	707	1	ENST00000449228.1:c.10G>T	p.Gly4Cys	p.G4C	ENST00000449228	NM_001127240.2	4	Ggc/Tgc																																																																														
MSH6	0	MSKCC	GRCh37	2	48032759	48032759	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	85	299	0	ENST00000234420.5:c.3559G>C	p.Glu1187Gln	p.E1187Q	ENST00000234420	NM_000179.2	1187	Gaa/Caa																																																																														
GNAS	0	MSKCC	GRCh37	20	57478613	57478613	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			788	187	569	0	ENST00000371085.3:c.285C>G	p.Ile95Met	p.I95M	ENST00000371085	NM_000516.4	95	atC/atG																																																																														
PBRM1	0	MSKCC	GRCh37	3	52613112	52613113	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			687	65	557	0	ENST00000394830.3:c.3415_3416del	p.Val1139LeufsTer16	p.V1139Lfs*16	ENST00000394830	NM_018313.4	1139	GTc/c																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467383	66467383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	68	251	0	ENST00000273854.3:c.886G>A	p.Glu296Lys	p.E296K	ENST00000273854	NM_004439.5	296	Gaa/Aaa																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158713	26158713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	81	266	0	ENST00000289316.2:c.316G>T	p.Glu106Ter	p.E106*	ENST00000289316	NM_138720.2	106	Gag/Tag																																																																														
EGFR	0	MSKCC	GRCh37	7	55242467	55242483	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACA	AATTAAGAGAAGCAACA	TTGCT			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	446	704	6	ENST00000275493.2:c.2237_2253delinsTTGCT	p.Glu746_Thr751delinsValAla	p.E746_T751delinsVA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACA/gTTGCT																																																																														
KMT2C	0	MSKCC	GRCh37	7	151853017	151853017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	134	445	0	ENST00000262189.6:c.11938C>G	p.His3980Asp	p.H3980D	ENST00000262189	NM_170606.2	3980	Cat/Gat																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873941	151873941	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	68	639	2	ENST00000262189.6:c.8597A>G	p.Glu2866Gly	p.E2866G	ENST00000262189	NM_170606.2	2866	gAa/gGa																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5534882	5534882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	234	649	1	ENST00000397747.3:c.193G>A	p.Asp65Asn	p.D65N	ENST00000397747	NM_025239.3	65	Gat/Aat																																																																														
TEK	0	MSKCC	GRCh37	9	27190569	27190569	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	276	773	0	ENST00000380036.4:c.1370G>C	p.Gly457Ala	p.G457A	ENST00000380036	NM_000459.3	457	gGa/gCa																																																																														
PDPK1	0	MSKCC	GRCh37	16	2636686	2636694	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCTGAGC	CTCCTGAGC	G			P-0008665-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			597	34	517	0	ENST00000342085.4:c.1135_1143delinsG	p.Leu379AlafsTer44	p.L379Afs*44	ENST00000342085	NM_002613.4	379	CTCCTGAGC/G																																																																														
EGFR	0	MSKCC	GRCh37	7	55242467	55242481	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	-			P-0009535-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			666	166	580	0	ENST00000275493.2:c.2237_2251del	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gca																																																																														
JAK1	0	MSKCC	GRCh37	1	65313315	65313315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	62	425	0	ENST00000342505.4:c.1799G>A	p.Gly600Glu	p.G600E	ENST00000342505	NM_002227.2	600	gGg/gAg																																																																														
PMS2	0	MSKCC	GRCh37	7	6038877	6038877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	69	385	0	ENST00000265849.7:c.567T>A	p.His189Gln	p.H189Q	ENST00000265849	NM_000535.5	189	caT/caA																																																																														
CBL	0	MSKCC	GRCh37	11	119167737	119167737	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	32	235	0	ENST00000264033.4:c.2146A>G	p.Ser716Gly	p.S716G	ENST00000264033	NM_005188.3	716	Agt/Ggt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0010455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	33	273	0	ENST00000349310.3:c.49G>T	p.Glu17Ter	p.E17*	ENST00000349310	NM_001014432.1	17	Gag/Tag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15973512	15973520	+	inframe_deletion	In_Frame_Del	DEL	TGGACATGG	TGGACATGG	-			P-0010455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	31	234	0	ENST00000268712.3:c.4472_4480del	p.Thr1491_Ser1493del	p.T1491_S1493del	ENST00000268712	NM_006311.3	1491	aCCATGTCCAga/aga																																																																														
SDHC	0	MSKCC	GRCh37	1	161293408	161293408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	178	530	2	ENST00000367975.2:c.25G>T	p.Val9Phe	p.V9F	ENST00000367975	NM_003001.3	9	Gtt/Ttt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473653	67473653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	120	531	2	ENST00000327367.4:c.733G>A	p.Gly245Arg	p.G245R	ENST00000327367	NM_005902.3	245	Ggg/Agg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18747438	18747438	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	69	250	0	ENST00000266497.5:c.3899T>A	p.Val1300Glu	p.V1300E	ENST00000266497		1300	gTa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	823	463	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10265064	10265064	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	130	573	0	ENST00000340748.4:c.1876C>T	p.Gln626Ter	p.Q626*	ENST00000340748		626	Cag/Tag																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100043	157100043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	11	93	0	ENST00000346085.5:c.980G>C	p.Gly327Ala	p.G327A	ENST00000346085	NM_020732.3	327	gGa/gCa																																																																														
APC	0	MSKCC	GRCh37	5	112178331	112178331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	141	554	0	ENST00000257430.4:c.7040G>A	p.Arg2347Lys	p.R2347K	ENST00000257430	NM_000038.5	2347	aGg/aAg																																																																														
POLE	0	MSKCC	GRCh37	12	133250256	133250256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	179	648	0	ENST00000320574.5:c.1264C>T	p.His422Tyr	p.H422Y	ENST00000320574	NM_006231.2	422	Cat/Tat																																																																														
AXIN2	0	MSKCC	GRCh37	17	63534355	63534355	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	516	721	0	ENST00000307078.5:c.1166A>G	p.His389Arg	p.H389R	ENST00000307078	NM_004655.3	389	cAc/cGc																																																																														
ERCC3	0	MSKCC	GRCh37	2	128051238	128051238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	482	714	0	ENST00000285398.2:c.85G>A	p.Ala29Thr	p.A29T	ENST00000285398	NM_000122.1	29	Gcc/Acc																																																																														
RAD50	0	MSKCC	GRCh37	5	131953932	131953932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	197	475	0	ENST00000265335.6:c.3335G>A	p.Arg1112Lys	p.R1112K	ENST00000265335		1112	aGg/aAg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9775907	9775907	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	151	897	3	ENST00000377346.4:c.371G>A	p.Gly124Asp	p.G124D	ENST00000377346	NM_005026.3	124	gGc/gAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223032	5223032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	168	945	0	ENST00000357368.4:c.2771C>T	p.Pro924Leu	p.P924L	ENST00000357368	NM_002850.3	924	cCg/cTg																																																																														
PALB2	0	MSKCC	GRCh37	16	23640966	23640966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	33	488	0	ENST00000261584.4:c.2509G>A	p.Glu837Lys	p.E837K	ENST00000261584	NM_024675.3	837	Gaa/Aaa																																																																														
ETV6	0	MSKCC	GRCh37	12	11905505	11905505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	26	312	1	ENST00000396373.4:c.155C>T	p.Ala52Val	p.A52V	ENST00000396373	NM_001987.4	52	gCg/gTg																																																																														
BRD4	0	MSKCC	GRCh37	19	15378278	15378278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	38	950	2	ENST00000263377.2:c.508G>A	p.Glu170Lys	p.E170K	ENST00000263377	NM_058243.2	170	Gag/Aag																																																																														
BRD4	0	MSKCC	GRCh37	19	15349620	15349620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	48	1043	1	ENST00000263377.2:c.3954G>T	p.Gln1318His	p.Q1318H	ENST00000263377	NM_058243.2	1318	caG/caT																																																																														
BRD4	0	MSKCC	GRCh37	19	15378253	15378253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	33	877	1	ENST00000263377.2:c.533G>A	p.Gly178Glu	p.G178E	ENST00000263377	NM_058243.2	178	gGa/gAa																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18266924	18266924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	184	747	0	ENST00000222254.8:c.235G>A	p.Gly79Arg	p.G79R	ENST00000222254	NM_005027.3	79	Ggg/Agg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974706	21974707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	29	622	0	ENST00000304494.5:c.120dup	p.Pro41ThrfsTer3	p.P41Tfs*3	ENST00000304494	NM_000077.4	40	-/A																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974706	21974707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	29	622	0	ENST00000304494.5:c.120dup	p.Pro41ThrfsTer3	p.P41Tfs*3	ENST00000304494	NM_000077.4	40	-/A																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348156	89348164	+	inframe_deletion	In_Frame_Del	DEL	GTGGCGCTC	GTGGCGCTC	-			P-0021447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	267	689	1	ENST00000301030.4:c.4786_4794del	p.Glu1596_His1598del	p.E1596_H1598del	ENST00000301030	NM_001256183.1	1596	GAGCGCCAC/-																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41280676	41280676	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	199	705	0	ENST00000349496.5:c.2189G>C	p.Gly730Ala	p.G730A	ENST00000349496	NM_001904.3	730	gGt/gCt																																																																														
IRS1	0	MSKCC	GRCh37	2	227662634	227662634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	61	750	0	ENST00000305123.5:c.821C>G	p.Ser274Cys	p.S274C	ENST00000305123	NM_005544.2	274	tCc/tGc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	312	777	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380350	14380350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	179	564	0	ENST00000256196.4:c.67G>A	p.Gly23Ser	p.G23S	ENST00000256196		23	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7578373	7578409	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCC	TCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCC	-			P-0021770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	348	608	0	ENST00000269305.4:c.521_557del	p.Arg174MetfsTer61	p.R174Mfs*61	ENST00000269305	NM_001126112.2	174	aGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAt/at																																																																														
POLE	0	MSKCC	GRCh37	12	133220539	133220539	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	112	588	0	ENST00000320574.5:c.4174A>G	p.Asn1392Asp	p.N1392D	ENST00000320574	NM_006231.2	1392	Aac/Gac																																																																														
NTRK2	0	MSKCC	GRCh37	9	87285806	87285806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	324	695	0	ENST00000277120.3:c.143C>A	p.Pro48His	p.P48H	ENST00000277120		48	cCt/cAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39922313	39922330	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACACAGGCAAGCCTAAAT	ACACAGGCAAGCCTAAAT	-			P-0022056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	65	198	0	ENST00000378444.4:c.3848-6_3859del		p.X1283_splice	ENST00000378444	NM_001123385.1	1283																																																																															
RRAGC	0	MSKCC	GRCh37	1	39305252	39305252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	93	735	0	ENST00000373001.3:c.1173C>G	p.His391Gln	p.H391Q	ENST00000373001	NM_022157.3	391	caC/caG																																																																														
CDK12	0	MSKCC	GRCh37	17	37627584	37627584	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	43	720	0	ENST00000447079.4:c.1499C>G	p.Thr500Arg	p.T500R	ENST00000447079	NM_015083.1	500	aCa/aGa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223860	36223860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	146	947	0	ENST00000222270.7:c.6410C>T	p.Pro2137Leu	p.P2137L	ENST00000222270	NM_014727.1	2137	cCc/cTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	31	560	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	8	786	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
SPEN	0	MSKCC	GRCh37	1	16199619	16199619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	140	607	0	ENST00000375759.3:c.392G>A	p.Arg131Gln	p.R131Q	ENST00000375759	NM_015001.2	131	cGg/cAg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57466824	57466826	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0023085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	57	410	0	ENST00000371085.3:c.46_48del	p.Glu16del	p.E16del	ENST00000371085	NM_000516.4	15	GAG/-																																																																														
KRAS	0	MSKCC	GRCh37	12	25398280	25398281	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0023106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	48	799	0	ENST00000256078.4:c.36_38dup	p.Gly13dup	p.G13dup	ENST00000256078	NM_033360.2	13	ggc/ggTGGc																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186503785	186503787	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-			P-0023106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	20	778	0	ENST00000323963.5:c.463_465delATT	p.Ile155del	p.I155del	ENST00000323963		154	caTATt/cat																																																																														
TSC1	0	MSKCC	GRCh37	9	135797265	135797265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	21	445	0	ENST00000298552.3:c.604T>G	p.Phe202Val	p.F202V	ENST00000298552	NM_001162426.1	202	Ttt/Gtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	44	612	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KIT	0	MSKCC	GRCh37	4	55599320	55599320	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28933969		P-0023446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	14	672	0	ENST00000288135.5:c.2446G>C	p.Asp816His	p.D816H	ENST00000288135	NM_000222.2	816	Gac/Cac																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356134	66356134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	29	381	0	ENST00000273854.3:c.1363C>T	p.Arg455Trp	p.R455W	ENST00000273854	NM_004439.5	455	Cgg/Tgg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118352680	118352680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	58	658	1	ENST00000534358.1:c.3885C>A	p.Ser1295Arg	p.S1295R	ENST00000534358	NM_005933.3	1295	agC/agA																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948288	71948288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	86	1100	0	ENST00000298229.2:c.3000G>T	p.Glu1000Asp	p.E1000D	ENST00000298229	NM_001567.3	1000	gaG/gaT																																																																														
AKT2	0	MSKCC	GRCh37	19	40745953	40745953	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	125	739	1	ENST00000392038.2:c.638C>T	p.Thr213Ile	p.T213I	ENST00000392038	NM_001626.4	213	aCt/aTt																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948289	71948289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	119	644	0	ENST00000298229.2:c.3001C>G	p.Pro1001Ala	p.P1001A	ENST00000298229	NM_001567.3	1001	Cca/Gca																																																																														
STAT3	0	MSKCC	GRCh37	17	40476729	40476729	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0026529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	102	390	0	ENST00000264657.5:c.1600G>T	p.Gly534Ter	p.G534*	ENST00000264657	NM_139276.2	534	Gga/Tga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0026747-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			642	20	377	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
RECQL	0	MSKCC	GRCh37	12	21629860	21629860	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	65	644	0	ENST00000421138.2:c.934T>C	p.Tyr312His	p.Y312H	ENST00000421138		312	Tac/Cac																																																																														
ETV1	0	MSKCC	GRCh37	7	13971213	13971213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	223	468	0	ENST00000405192.2:c.716A>G	p.Asn239Ser	p.N239S	ENST00000405192	NM_001163147.1	239	aAc/aGc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431669	49431669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	194	587	0	ENST00000301067.7:c.9470G>C	p.Gly3157Ala	p.G3157A	ENST00000301067	NM_003482.3	3157	gGa/gCa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16004945	16004945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	176	541	0	ENST00000268712.3:c.2309C>T	p.Pro770Leu	p.P770L	ENST00000268712	NM_006311.3	770	cCa/cTa																																																																														
AMER1	0	MSKCC	GRCh37	X	63410673	63410673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027275-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			664	162	701	0	ENST00000330258.3:c.2494G>A	p.Glu832Lys	p.E832K	ENST00000330258	NM_152424.3	832	Gaa/Aaa																																																																														
MTOR	0	MSKCC	GRCh37	1	11174386	11174386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027275-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			51	330	524	0	ENST00000361445.4:c.7289G>T	p.Arg2430Met	p.R2430M	ENST00000361445	NM_004958.3	2430	aGg/aTg																																																																														
RAD50	0	MSKCC	GRCh37	5	131976376	131976376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027275-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			65	310	458	0	ENST00000265335.6:c.3631C>T	p.Leu1211Phe	p.L1211F	ENST00000265335		1211	Ctc/Ttc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149504319	149504319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027275-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			77	324	611	1	ENST00000261799.4:c.1883C>T	p.Thr628Met	p.T628M	ENST00000261799	NM_002609.3	628	aCg/aTg																																																																														
BCOR	0	MSKCC	GRCh37	X	39922956	39922956	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027275-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			396	305	562	0	ENST00000378444.4:c.3752A>G	p.Asn1251Ser	p.N1251S	ENST00000378444	NM_001123385.1	1251	aAc/aGc																																																																														
AMER1	0	MSKCC	GRCh37	X	63410661	63410661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027275-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			650	163	701	0	ENST00000330258.3:c.2506G>A	p.Ala836Thr	p.A836T	ENST00000330258	NM_152424.3	836	Gcc/Acc																																																																														
AMER1	0	MSKCC	GRCh37	X	63410695	63410695	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027275-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			640	157	666	0	ENST00000330258.3:c.2472G>C	p.Glu824Asp	p.E824D	ENST00000330258	NM_152424.3	824	gaG/gaC																																																																														
AMER1	0	MSKCC	GRCh37	X	63410718	63410718	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027275-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			604	169	650	0	ENST00000330258.3:c.2449G>C	p.Asp817His	p.D817H	ENST00000330258	NM_152424.3	817	Gat/Cat																																																																														
AMER1	0	MSKCC	GRCh37	X	63411030	63411030	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027275-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			509	165	558	0	ENST00000330258.3:c.2137G>C	p.Asp713His	p.D713H	ENST00000330258	NM_152424.3	713	Gat/Cat																																																																														
AMER1	0	MSKCC	GRCh37	X	63411334	63411335	+	missense_variant	Missense_Mutation	DNP	CC	CC	TG			P-0027275-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			587	179	711	1	ENST00000330258.3:c.1832_1833delinsCA	p.Arg611Thr	p.R611T	ENST00000330258	NM_152424.3	611	aGG/aCA																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0027431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	132	540	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	50	330	1	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
MTOR	0	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	99	713	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt																																																																														
ATM	0	MSKCC	GRCh37	11	108216624	108216626	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0027431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	60	354	0	ENST00000278616.4:c.8578_8580del	p.Ser2860del	p.S2860del	ENST00000278616	NM_000051.3	2858	aCTTct/act																																																																														
PTEN	0	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	65	407	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153268150	153268150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	41	446	1	ENST00000281708.4:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000281708	NM_033632.3	220	Caa/Taa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952064	178952064	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	76	481	0	ENST00000263967.3:c.3119T>A	p.Met1040Lys	p.M1040K	ENST00000263967	NM_006218.2	1040	aTg/aAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105551	27105551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	77	555	0	ENST00000324856.7:c.5162G>C	p.Arg1721Pro	p.R1721P	ENST00000324856	NM_006015.4	1721	cGa/cCa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105651	27105652	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	85	531	0	ENST00000324856.7:c.5263dup	p.Ser1755LysfsTer18	p.S1755Kfs*18	ENST00000324856	NM_006015.4	1754	-/A																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432638	49432638	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0027431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	169	733	0	ENST00000301067.7:c.8501C>G	p.Ser2834Ter	p.S2834*	ENST00000301067	NM_003482.3	2834	tCa/tGa																																																																														
CTCF	0	MSKCC	GRCh37	16	67645252	67645252	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	113	715	0	ENST00000264010.4:c.517G>T	p.Gly173Ter	p.G173*	ENST00000264010	NM_006565.3	173	Gga/Tga																																																																														
EPHB1	0	MSKCC	GRCh37	3	134880988	134880988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	93	572	0	ENST00000398015.3:c.1551C>A	p.Phe517Leu	p.F517L	ENST00000398015	NM_004441.4	517	ttC/ttA																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56181850	56181850	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	83	524	0	ENST00000399503.3:c.4074del	p.Tyr1359IlefsTer18	p.Y1359Ifs*18	ENST00000399503	NM_005921.1	1358	tcG/tc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	220	631	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	190	736	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0027632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	166	644	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
GATA3	0	MSKCC	GRCh37	10	8115850	8115850	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	186	827	0	ENST00000346208.3:c.1196A>T	p.His399Leu	p.H399L	ENST00000346208		399	cAc/cTc																																																																														
RET	0	MSKCC	GRCh37	10	43614990	43614990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	156	651	0	ENST00000355710.3:c.2404C>G	p.Leu802Val	p.L802V	ENST00000355710	NM_020975.4	802	Ctc/Gtc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729947	30729948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	346	549	0	ENST00000359013.4:c.1543_1544insC	p.Asn515ThrfsTer26	p.N515Tfs*26	ENST00000359013	NM_001024847.2	515	aac/aCac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	627	539	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	225	350	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	309	454	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112176386	112176386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	138	285	0	ENST00000257430.4:c.5095G>A	p.Glu1699Lys	p.E1699K	ENST00000257430	NM_000038.5	1699	Gag/Aag																																																																														
DICER1	0	MSKCC	GRCh37	14	95566158	95566158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	459	476	0	ENST00000343455.3:c.4165C>G	p.Gln1389Glu	p.Q1389E	ENST00000343455	NM_177438.2	1389	Caa/Gaa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71944012	71944012	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	281	612	0	ENST00000298229.2:c.1945C>T	p.Arg649Ter	p.R649*	ENST00000298229	NM_001567.3	649	Cga/Tga																																																																														
RICTOR	0	MSKCC	GRCh37	5	38982057	38982057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	514	559	0	ENST00000357387.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000357387	NM_152756.3	222	cGa/cAa																																																																														
MED12	0	MSKCC	GRCh37	X	70340820	70340820	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	191	455	0	ENST00000374080.3:c.554-1G>A		p.X185_splice	ENST00000374080		185																																																																															
MAP2K4	0	MSKCC	GRCh37	17	11984705	11984705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	169	261	1	ENST00000353533.5:c.251C>T	p.Ser84Leu	p.S84L	ENST00000353533	NM_003010.3	84	tCa/tTa																																																																														
GNA11	0	MSKCC	GRCh37	19	3121074	3121074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	419	737	0	ENST00000078429.4:c.977C>T	p.Ser326Leu	p.S326L	ENST00000078429	NM_002067.2	326	tCa/tTa																																																																														
CIC	0	MSKCC	GRCh37	19	42791744	42791744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	432	559	1	ENST00000575354.2:c.630C>A	p.Phe210Leu	p.F210L	ENST00000575354	NM_015125.3	210	ttC/ttA																																																																														
ERCC2	0	MSKCC	GRCh37	19	45864501	45864886	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGAGCTGACCCCATAGAATTTCTCTGGCCTCCTCCCTTACCACTGCCCATGCCATCCTTCTCCACTCTGCAGCCCGAGGAAGTCTGTGAAAATGTAAATCTGAGCACAAGGCTTACTCAAGAACTATGTATGGCTCCCCACTGCCTTCAAAATAGGGCCCACACTTCCAAGCCAAACCCCACAAAGCCCTGTGTGTCCTGCCAACAACCCTCTAGACCCTGCTGGGACCCTGATTCCAGCTGCTAGGAGGCCCAGCAGGGACAGAAAAAGGTGAGCTTACCTTTGGCGTAGGTGCTGACAAGGGTGGCAAAGTTAGCAAGGAGGGTGAGCGGGGAGAAGTCAGCAAGGTCGGTGATCTCCAGAGTATGCAGCAGGGACCGGAGGC	GTGAGCTGACCCCATAGAATTTCTCTGGCCTCCTCCCTTACCACTGCCCATGCCATCCTTCTCCACTCTGCAGCCCGAGGAAGTCTGTGAAAATGTAAATCTGAGCACAAGGCTTACTCAAGAACTATGTATGGCTCCCCACTGCCTTCAAAATAGGGCCCACACTTCCAAGCCAAACCCCACAAAGCCCTGTGTGTCCTGCCAACAACCCTCTAGACCCTGCTGGGACCCTGATTCCAGCTGCTAGGAGGCCCAGCAGGGACAGAAAAAGGTGAGCTTACCTTTGGCGTAGGTGCTGACAAGGGTGGCAAAGTTAGCAAGGAGGGTGAGCGGGGAGAAGTCAGCAAGGTCGGTGATCTCCAGAGTATGCAGCAGGGACCGGAGGC	-			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	90	3	0	ENST00000391945.4:c.1133_1237+281del		p.X378_splice	ENST00000391945	NM_000400.3	378																																																																															
NCOA3	0	MSKCC	GRCh37	20	46281284	46281284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	379	380	1	ENST00000371998.3:c.4081G>A	p.Glu1361Lys	p.E1361K	ENST00000371998		1361	Gaa/Aaa																																																																														
MLH1	0	MSKCC	GRCh37	3	37092097	37092097	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	135	473	0	ENST00000231790.2:c.2224C>T	p.Gln742Ter	p.Q742*	ENST00000231790	NM_000249.3	742	Cag/Tag																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323333	31323333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	124	269	0	ENST00000412585.2:c.656C>T	p.Ser219Phe	p.S219F	ENST00000412585	NM_005514.6	219	tCt/tTt																																																																														
EPHA7	0	MSKCC	GRCh37	6	93973611	93973611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	97	457	1	ENST00000369303.4:c.1765G>A	p.Asp589Asn	p.D589N	ENST00000369303	NM_004440.3	589	Gac/Aac																																																																														
HGF	0	MSKCC	GRCh37	7	81334756	81334756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	213	508	0	ENST00000222390.5:c.1960G>A	p.Glu654Lys	p.E654K	ENST00000222390	NM_000601.4	654	Gag/Aag																																																																														
RAD21	0	MSKCC	GRCh37	8	117868972	117868972	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	389	421	0	ENST00000297338.2:c.727G>C	p.Asp243His	p.D243H	ENST00000297338	NM_006265.2	243	Gat/Cat																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22006071	22006071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	404	560	0	ENST00000276925.6:c.332C>T	p.Ala111Val	p.A111V	ENST00000276925	NM_004936.3	111	gCc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	74	387	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	99	395	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	190	551	1	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																														
FLT1	0	MSKCC	GRCh37	13	28897070	28897070	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	109	294	0	ENST00000282397.4:c.2810A>T	p.His937Leu	p.H937L	ENST00000282397	NM_002019.4	937	cAc/cTc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212488754	212488754	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	63	372	0	ENST00000342788.4:c.2095A>C	p.Thr699Pro	p.T699P	ENST00000342788	NM_005235.2	699	Act/Cct																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502388	186502389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	101	351	0	ENST00000323963.5:c.112dup	p.Met38AsnfsTer17	p.M38Nfs*17	ENST00000323963		37	-/A																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858054	152858054	+	synonymous_variant	Silent	SNP	C	C	T			P-0027647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	28	361	0	ENST00000406277.2:c.561G>A	p.Gln187=	p.Q187=	ENST00000406277	NM_152274.4	187	caG/caA																																																																														
FAT1	0	MSKCC	GRCh37	4	187584530	187584530	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200633985		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	31	411	0	ENST00000441802.2:c.3503C>T	p.Ser1168Leu	p.S1168L	ENST00000441802	NM_005245.3	1168	tCg/tTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	51	608	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
IGF1R	0	MSKCC	GRCh37	15	99434839	99434839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	27	390	1	ENST00000268035.6:c.926C>T	p.Ser309Leu	p.S309L	ENST00000268035	NM_000875.3	309	tCg/tTg																																																																														
ERCC5	0	MSKCC	GRCh37	13	103513972	103513972	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61749896		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	33	448	0	ENST00000355739.4:c.788G>A	p.Arg263Gln	p.R263Q	ENST00000355739	NM_000123.3	263	cGa/cAa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149501449	149501449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	29	529	0	ENST00000261799.4:c.2338C>T	p.Pro780Ser	p.P780S	ENST00000261799	NM_002609.3	780	Ccc/Tcc																																																																														
INSR	0	MSKCC	GRCh37	19	7267385	7267385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	40	398	0	ENST00000302850.5:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000302850	NM_000208.2	208	cGa/cAa																																																																														
ASXL2	0	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	18	204	0	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																																																														
POLE	0	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	35	577	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171607	36171607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	26	276	0	ENST00000300305.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000300305		320	Cga/Tga																																																																														
RBM10	0	MSKCC	GRCh37	X	47045676	47045676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	29	547	1	ENST00000329236.7:c.2323C>T	p.Arg775Trp	p.R775W	ENST00000329236	NM_001204466.1	775	Cgg/Tgg																																																																														
CDK4	0	MSKCC	GRCh37	12	58142357	58142357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	40	397	1	ENST00000257904.6:c.863G>A	p.Arg288Gln	p.R288Q	ENST00000257904	NM_000075.3	288	cGa/cAa																																																																														
ATRX	0	MSKCC	GRCh37	X	76938029	76938029	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	36	495	0	ENST00000373344.5:c.2719C>T	p.Arg907Ter	p.R907*	ENST00000373344	NM_000489.3	907	Cga/Tga																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509723	106509723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	38	491	1	ENST00000359195.3:c.1717G>T	p.Glu573Ter	p.E573*	ENST00000359195	NM_002649.2	573	Gaa/Taa																																																																														
JAK2	0	MSKCC	GRCh37	9	5050770	5050770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	33	413	0	ENST00000381652.3:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000381652	NM_004972.3	185	Gat/Tat																																																																														
ARID5B	0	MSKCC	GRCh37	10	63661997	63661997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	38	327	0	ENST00000279873.7:c.101G>T	p.Arg34Ile	p.R34I	ENST00000279873	NM_032199.2	34	aGa/aTa																																																																														
DIS3	0	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	23	317	0	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	29	457	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
CASP8	0	MSKCC	GRCh37	2	202141631	202141631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	37	513	0	ENST00000358485.4:c.919C>T	p.Arg307Trp	p.R307W	ENST00000358485	NM_001080125.1	307	Cgg/Tgg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468516	89468516	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	27	339	0	ENST00000336596.2:c.2050C>T	p.Arg684Ter	p.R684*	ENST00000336596	NM_005233.5	684	Cga/Tga																																																																														
PGR	0	MSKCC	GRCh37	11	100912815	100912815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	31	390	0	ENST00000325455.5:c.2507G>A	p.Arg836Gln	p.R836Q	ENST00000325455	NM_001202474.3	836	cGa/cAa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81965260	81965260	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	18	391	0	ENST00000359376.3:c.2739+1G>A		p.X913_splice	ENST00000359376	NM_002661.3	913																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	37	436	0	ENST00000263967.3:c.1625A>C	p.Glu542Ala	p.E542A	ENST00000263967	NM_006218.2	542	gAa/gCa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350146	89350146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	37	565	0	ENST00000301030.4:c.2804C>T	p.Ser935Leu	p.S935L	ENST00000301030	NM_001256183.1	935	tCg/tTg																																																																														
KDR	0	MSKCC	GRCh37	4	55948183	55948183	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	50	463	0	ENST00000263923.4:c.3788T>C	p.Val1263Ala	p.V1263A	ENST00000263923	NM_002253.2	1263	gTt/gCt																																																																														
ROS1	0	MSKCC	GRCh37	6	117622269	117622269	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	38	458	0	ENST00000368508.3:c.6601G>T	p.Glu2201Ter	p.E2201*	ENST00000368508	NM_002944.2	2201	Gaa/Taa																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120360	94120360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	18	250	0	ENST00000369303.4:c.691C>T	p.Arg231Ter	p.R231*	ENST00000369303	NM_004440.3	231	Cga/Tga																																																																														
BRAF	0	MSKCC	GRCh37	7	140453185	140453185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	22	312	0	ENST00000288602.6:c.1750C>T	p.Leu584Phe	p.L584F	ENST00000288602	NM_004333.4	584	Ctt/Ttt																																																																														
PAK1	0	MSKCC	GRCh37	11	77048448	77048448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	34	507	0	ENST00000356341.3:c.1137C>A	p.Phe379Leu	p.F379L	ENST00000356341	NM_002576.4	379	ttC/ttA																																																																														
PMS2	0	MSKCC	GRCh37	7	6027082	6027082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	19	196	0	ENST00000265849.7:c.1314G>T	p.Lys438Asn	p.K438N	ENST00000265849	NM_000535.5	438	aaG/aaT																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950648	38950648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776074870		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	22	325	0	ENST00000357387.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000357387	NM_152756.3	1101	tCg/tTg																																																																														
POLE	0	MSKCC	GRCh37	12	133215787	133215787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	38	618	1	ENST00000320574.5:c.5476C>T	p.Arg1826Trp	p.R1826W	ENST00000320574	NM_006231.2	1826	Cgg/Tgg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858202	9858202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	26	385	0	ENST00000330684.3:c.3199C>T	p.Arg1067Trp	p.R1067W	ENST00000330684	NM_001134407.1	1067	Cgg/Tgg																																																																														
PNRC1	0	MSKCC	GRCh37	6	89793716	89793716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	26	339	0	ENST00000336032.3:c.785C>T	p.Ser262Leu	p.S262L	ENST00000336032	NM_006813.2	262	tCg/tTg																																																																														
GLI1	0	MSKCC	GRCh37	12	57861149	57861149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	27	446	0	ENST00000228682.2:c.946G>A	p.Glu316Lys	p.E316K	ENST00000228682	NM_005269.2	316	Gaa/Aaa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99203950	99203950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	31	296	0	ENST00000074304.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000074304	NM_001134224.1	938	cGa/cAa																																																																														
TET2	0	MSKCC	GRCh37	4	106157539	106157539	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192553789		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	29	309	1	ENST00000380013.4:c.2440C>T	p.Arg814Cys	p.R814C	ENST00000380013	NM_001127208.2	814	Cgt/Tgt																																																																														
ROS1	0	MSKCC	GRCh37	6	117642470	117642470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	32	512	0	ENST00000368508.3:c.5729G>A	p.Arg1910Gln	p.R1910Q	ENST00000368508	NM_002944.2	1910	cGa/cAa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984839	11984839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	26	370	1	ENST00000353533.5:c.385G>A	p.Ala129Thr	p.A129T	ENST00000353533	NM_003010.3	129	Gca/Aca																																																																														
TERT	0	MSKCC	GRCh37	5	1294283	1294283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	32	540	2	ENST00000310581.5:c.718C>T	p.Arg240Cys	p.R240C	ENST00000310581	NM_198253.2	240	Cgt/Tgt																																																																														
TSHR	0	MSKCC	GRCh37	14	81557479	81557479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	31	355	1	ENST00000298171.2:c.459C>A	p.Phe153Leu	p.F153L	ENST00000298171	NM_000369.2	153	ttC/ttA																																																																														
TET1	0	MSKCC	GRCh37	10	70332605	70332605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	30	485	1	ENST00000373644.4:c.510G>T	p.Glu170Asp	p.E170D	ENST00000373644	NM_030625.2	170	gaG/gaT																																																																														
IRS1	0	MSKCC	GRCh37	2	227662140	227662140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	31	549	0	ENST00000305123.5:c.1315C>T	p.Arg439Trp	p.R439W	ENST00000305123	NM_005544.2	439	Cgg/Tgg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692811	89692811	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	24	235	1	ENST00000371953.3:c.295G>T	p.Glu99Ter	p.E99*	ENST00000371953	NM_000314.4	99	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578238	7578238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	37	567	0	ENST00000269305.4:c.611A>G	p.Glu204Gly	p.E204G	ENST00000269305	NM_001126112.2	204	gAg/gGg																																																																														
BCOR	0	MSKCC	GRCh37	X	39913224	39913224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	31	446	0	ENST00000378444.4:c.4891G>A	p.Asp1631Asn	p.D1631N	ENST00000378444	NM_001123385.1	1631	Gat/Aat																																																																														
RRAS2	0	MSKCC	GRCh37	11	14303198	14303198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	31	482	0	ENST00000256196.4:c.477G>T	p.Lys159Asn	p.K159N	ENST00000256196		159	aaG/aaT																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56184142	56184142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	27	443	0	ENST00000399503.3:c.4347G>A	p.Trp1449Ter	p.W1449*	ENST00000399503	NM_005921.1	1449	tgG/tgA																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602334	10602334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	39	634	1	ENST00000171111.5:c.1244G>A	p.Arg415His	p.R415H	ENST00000171111	NM_203500.1	415	cGc/cAc																																																																														
PTPN11	0	MSKCC	GRCh37	12	112926960	112926960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	30	417	0	ENST00000351677.2:c.1580G>A	p.Arg527His	p.R527H	ENST00000351677	NM_002834.3	527	cGc/cAc																																																																														
ACVR1	0	MSKCC	GRCh37	2	158617503	158617503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	35	443	0	ENST00000263640.3:c.1153G>A	p.Glu385Lys	p.E385K	ENST00000263640	NM_001105.4	385	Gaa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	37	453	1	ENST00000371953.3:c.70G>T	p.Asp24Tyr	p.D24Y	ENST00000371953	NM_000314.4	24	Gac/Tac																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4101118	4101118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	29	356	0	ENST00000262948.5:c.604G>A	p.Val202Met	p.V202M	ENST00000262948	NM_030662.3	202	Gtg/Atg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55144632	55144632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	27	403	0	ENST00000257290.5:c.2106G>T	p.Lys702Asn	p.K702N	ENST00000257290	NM_006206.4	702	aaG/aaT																																																																														
ERCC5	0	MSKCC	GRCh37	13	103527931	103527931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs4150388		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	23	320	2	ENST00000355739.4:c.3239G>A	p.Gly1080Glu	p.G1080E	ENST00000355739	NM_000123.3	1080	gGa/gAa																																																																														
FGF3	0	MSKCC	GRCh37	11	69625110	69625110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	27	528	0	ENST00000334134.2:c.683C>T	p.Ser228Leu	p.S228L	ENST00000334134	NM_005247.2	228	tCg/tTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374726	118374726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	24	350	1	ENST00000534358.1:c.8119C>T	p.Arg2707Trp	p.R2707W	ENST00000534358	NM_005933.3	2707	Cgg/Tgg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967567	26967567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	33	482	0	ENST00000381527.3:c.710G>A	p.Arg237Gln	p.R237Q	ENST00000381527	NM_001260.1	237	cGa/cAa																																																																														
ATR	0	MSKCC	GRCh37	3	142188271	142188271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202193482		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	45	409	0	ENST00000350721.4:c.6460G>A	p.Asp2154Asn	p.D2154N	ENST00000350721	NM_001184.3	2154	Gat/Aat																																																																														
ROS1	0	MSKCC	GRCh37	6	117609759	117609759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	35	447	1	ENST00000368508.3:c.6940G>T	p.Asp2314Tyr	p.D2314Y	ENST00000368508	NM_002944.2	2314	Gat/Tat																																																																														
TSC1	0	MSKCC	GRCh37	9	135796753	135796753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	18	325	1	ENST00000298552.3:c.734G>A	p.Arg245Gln	p.R245Q	ENST00000298552	NM_001162426.1	245	cGa/cAa																																																																														
TAP1	0	MSKCC	GRCh37	6	32818837	32818837	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	35	514	0	ENST00000354258.4:c.1114C>T	p.Arg372Ter	p.R372*	ENST00000354258	NM_000593.5	372	Cga/Tga																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251876	212251876	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	25	214	0	ENST00000342788.4:c.3184-1G>T		p.X1062_splice	ENST00000342788	NM_005235.2	1062																																																																															
ATRX	0	MSKCC	GRCh37	X	76874295	76874295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	33	505	0	ENST00000373344.5:c.5427G>T	p.Glu1809Asp	p.E1809D	ENST00000373344	NM_000489.3	1809	gaG/gaT																																																																														
WWTR1	0	MSKCC	GRCh37	3	149374921	149374921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	36	549	1	ENST00000360632.3:c.173C>T	p.Ser58Leu	p.S58L	ENST00000360632	NM_015472.4	58	tCg/tTg																																																																														
RAD51C	0	MSKCC	GRCh37	17	56780619	56780619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137947462		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	49	464	0	ENST00000337432.4:c.634C>T	p.Arg212Cys	p.R212C	ENST00000337432	NM_058216.2	212	Cgc/Tgc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188404	32188404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	28	397	0	ENST00000375023.3:c.937G>A	p.Glu313Lys	p.E313K	ENST00000375023	NM_004557.3	313	Gaa/Aaa																																																																														
EZH1	0	MSKCC	GRCh37	17	40871210	40871210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	28	369	0	ENST00000428826.2:c.680C>T	p.Ser227Phe	p.S227F	ENST00000428826		227	tCc/tTc																																																																														
NUF2	0	MSKCC	GRCh37	1	163297332	163297332	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	36	467	1	ENST00000271452.3:c.178C>T	p.Arg60Ter	p.R60*	ENST00000271452	NM_145697.2	60	Cga/Tga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467723	66467723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	32	336	0	ENST00000273854.3:c.546C>A	p.Ser182Arg	p.S182R	ENST00000273854	NM_004439.5	182	agC/agA																																																																														
RRAGC	0	MSKCC	GRCh37	1	39305238	39305238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	48	415	0	ENST00000373001.3:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000373001	NM_022157.3	396	cGa/cAa																																																																														
AKT2	0	MSKCC	GRCh37	19	40741894	40741894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	40	573	1	ENST00000392038.2:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000392038	NM_001626.4	360	Gag/Aag																																																																														
DROSHA	0	MSKCC	GRCh37	5	31451654	31451654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	34	404	0	ENST00000344624.3:c.2668C>T	p.Arg890Cys	p.R890C	ENST00000344624		890	Cgt/Tgt																																																																														
MSH2	0	MSKCC	GRCh37	2	47705445	47705445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	17	275	0	ENST00000233146.2:c.2245G>A	p.Glu749Lys	p.E749K	ENST00000233146	NM_000251.2	749	Gaa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056157	27056157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	32	386	1	ENST00000324856.7:c.1153G>A	p.Asp385Asn	p.D385N	ENST00000324856	NM_006015.4	385	Gat/Aat																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932848	36932848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	35	646	0	ENST00000361632.4:c.2023C>T	p.Pro675Ser	p.P675S	ENST00000361632		675	Ccc/Tcc																																																																														
MYCL1	0	MSKCC	GRCh37	1	40363354	40363354	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	37	551	0	ENST00000397332.2:c.875G>T	p.Ser292Ile	p.S292I	ENST00000397332	NM_001033082.2	292	aGt/aTt																																																																														
RAD54L	0	MSKCC	GRCh37	1	46739132	46739132	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	22	422	0	ENST00000371975.4:c.1481T>C	p.Leu494Pro	p.L494P	ENST00000371975	NM_003579.3	494	cTg/cCg																																																																														
BCL10	0	MSKCC	GRCh37	1	85736485	85736485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	39	327	0	ENST00000370580.1:c.162A>C	p.Glu54Asp	p.E54D	ENST00000370580	NM_003921.4	54	gaA/gaC																																																																														
CSDE1	0	MSKCC	GRCh37	1	115275269	115275269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	45	512	0	ENST00000438362.2:c.1144G>A	p.Val382Ile	p.V382I	ENST00000438362	NM_001242891.1	382	Gtt/Att																																																																														
DDR2	0	MSKCC	GRCh37	1	162729744	162729744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	34	576	0	ENST00000367921.3:c.830G>A	p.Arg277His	p.R277H	ENST00000367921	NM_006182.2	277	cGc/cAc																																																																														
NUF2	0	MSKCC	GRCh37	1	163306627	163306627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	26	266	0	ENST00000271452.3:c.424C>A	p.Leu142Ile	p.L142I	ENST00000271452	NM_145697.2	142	Ctt/Att																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957481	175957481	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	37	442	0	ENST00000367669.3:c.1915C>A	p.His639Asn	p.H639N	ENST00000367669	NM_022457.5	639	Cat/Aat																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175810	176175810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	24	458	2	ENST00000367669.3:c.305G>A	p.Ser102Asn	p.S102N	ENST00000367669	NM_022457.5	102	aGc/aAc																																																																														
RET	0	MSKCC	GRCh37	10	43622080	43622080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	27	383	0	ENST00000355710.3:c.3097C>A	p.Leu1033Ile	p.L1033I	ENST00000355710	NM_020975.4	1033	Ctc/Atc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850731	63850731	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	27	448	0	ENST00000279873.7:c.1509T>G	p.Phe503Leu	p.F503L	ENST00000279873	NM_032199.2	503	ttT/ttG																																																																														
TET1	0	MSKCC	GRCh37	10	70332922	70332922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	33	523	0	ENST00000373644.4:c.827G>A	p.Arg276Gln	p.R276Q	ENST00000373644	NM_030625.2	276	cGa/cAa																																																																														
PAK1	0	MSKCC	GRCh37	11	77051735	77051735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	45	495	1	ENST00000356341.3:c.1072G>A	p.Glu358Lys	p.E358K	ENST00000356341	NM_002576.4	358	Gaa/Aaa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94153295	94153295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	43	397	0	ENST00000323929.3:c.2123G>T	p.Arg708Ile	p.R708I	ENST00000323929	NM_005591.3	708	aGa/aTa																																																																														
PGR	0	MSKCC	GRCh37	11	100912728	100912728	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2020880		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	43	433	0	ENST00000325455.5:c.2594C>T	p.Ser865Leu	p.S865L	ENST00000325455	NM_001202474.3	865	tCg/tTg																																																																														
YAP1	0	MSKCC	GRCh37	11	102056830	102056830	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	55	574	0	ENST00000282441.5:c.770C>A	p.Ser257Tyr	p.S257Y	ENST00000282441	NM_001130145.2	257	tCt/tAt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118342687	118342687	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	20	318	0	ENST00000534358.1:c.813A>C	p.Lys271Asn	p.K271N	ENST00000534358	NM_005933.3	271	aaA/aaC																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18719961	18719961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	36	476	1	ENST00000266497.5:c.3858G>T	p.Gln1286His	p.Q1286H	ENST00000266497		1286	caG/caT																																																																														
GLI1	0	MSKCC	GRCh37	12	57864405	57864405	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	28	520	0	ENST00000228682.2:c.1882G>T	p.Gly628Ter	p.G628*	ENST00000228682	NM_005269.2	628	Gga/Tga																																																																														
GLI1	0	MSKCC	GRCh37	12	57865639	57865639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	38	681	2	ENST00000228682.2:c.3116C>A	p.Ser1039Tyr	p.S1039Y	ENST00000228682	NM_005269.2	1039	tCt/tAt																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885978	111885978	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	31	472	1	ENST00000341259.2:c.1600G>T	p.Glu534Ter	p.E534*	ENST00000341259	NM_005475.2	534	Gaa/Taa																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426774	121426774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	42	580	1	ENST00000257555.6:c.465G>T	p.Lys155Asn	p.K155N	ENST00000257555		155	aaG/aaT																																																																														
SETD8	0	MSKCC	GRCh37	12	123892065	123892065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	32	333	0	ENST00000330479.4:c.874C>T	p.Arg292Cys	p.R292C	ENST00000330479	NM_020382.3	292	Cgc/Tgc																																																																														
CDK8	0	MSKCC	GRCh37	13	26959449	26959449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	32	394	0	ENST00000381527.3:c.616C>A	p.Leu206Ile	p.L206I	ENST00000381527	NM_001260.1	206	Ctt/Att																																																																														
FLT1	0	MSKCC	GRCh37	13	28883029	28883029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	34	426	1	ENST00000282397.4:c.3671G>T	p.Arg1224Ile	p.R1224I	ENST00000282397	NM_002019.4	1224	aGa/aTa																																																																														
DIS3	0	MSKCC	GRCh37	13	73349471	73349471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	29	418	0	ENST00000377767.4:c.865G>A	p.Glu289Lys	p.E289K	ENST00000377767	NM_014953.3	289	Gaa/Aaa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30102097	30102097	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	37	504	0	ENST00000331968.5:c.1370A>G	p.Asp457Gly	p.D457G	ENST00000331968	NM_002742.2	457	gAc/gGc																																																																														
DICER1	0	MSKCC	GRCh37	14	95570317	95570317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	19	325	0	ENST00000343455.3:c.3416G>T	p.Arg1139Ile	p.R1139I	ENST00000343455	NM_177438.2	1139	aGa/aTa																																																																														
DICER1	0	MSKCC	GRCh37	14	95582911	95582911	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143533680		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	26	336	1	ENST00000343455.3:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000343455	NM_177438.2	544	cGa/cAa																																																																														
MGA	0	MSKCC	GRCh37	15	41988899	41988899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	43	498	0	ENST00000219905.7:c.1691G>T	p.Arg564Ile	p.R564I	ENST00000219905	NM_001164273.1	564	aGa/aTa																																																																														
MGA	0	MSKCC	GRCh37	15	42035003	42035003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	43	483	0	ENST00000219905.7:c.4845G>T	p.Met1615Ile	p.M1615I	ENST00000219905	NM_001164273.1	1615	atG/atT																																																																														
NTRK3	0	MSKCC	GRCh37	15	88726694	88726694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	28	388	0	ENST00000360948.2:c.350G>A	p.Ser117Asn	p.S117N	ENST00000360948	NM_001012338.2	117	aGc/aAc																																																																														
TSC2	0	MSKCC	GRCh37	16	2121536	2121536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	31	559	0	ENST00000219476.3:c.1865G>A	p.Arg622Gln	p.R622Q	ENST00000219476	NM_000548.3	622	cGg/cAg																																																																														
SLX4	0	MSKCC	GRCh37	16	3640689	3640689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	34	544	0	ENST00000294008.3:c.2950G>A	p.Glu984Lys	p.E984K	ENST00000294008	NM_032444.2	984	Gaa/Aaa																																																																														
SLX4	0	MSKCC	GRCh37	16	3640733	3640733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	29	422	0	ENST00000294008.3:c.2906G>T	p.Arg969Ile	p.R969I	ENST00000294008	NM_032444.2	969	aGa/aTa																																																																														
SLX4	0	MSKCC	GRCh37	16	3644491	3644491	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	52	673	0	ENST00000294008.3:c.2123T>C	p.Phe708Ser	p.F708S	ENST00000294008	NM_032444.2	708	tTc/tCc																																																																														
SLX4	0	MSKCC	GRCh37	16	3646333	3646333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	45	594	1	ENST00000294008.3:c.1745G>A	p.Arg582Gln	p.R582Q	ENST00000294008	NM_032444.2	582	cGa/cAa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3860642	3860642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	37	543	0	ENST00000262367.5:c.937G>A	p.Asp313Asn	p.D313N	ENST00000262367	NM_004380.2	313	Gat/Aat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827388	72827388	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	54	559	1	ENST00000268489.5:c.9193G>T	p.Glu3065Ter	p.E3065*	ENST00000268489	NM_006885.3	3065	Gaa/Taa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350687	89350687	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	68	774	1	ENST00000301030.4:c.2263G>T	p.Glu755Ter	p.E755*	ENST00000301030	NM_001256183.1	755	Gaa/Taa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37863269	37863269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149937802		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	39	543	1	ENST00000269571.5:c.100C>T	p.Arg34Trp	p.R34W	ENST00000269571		34	Cgg/Tgg																																																																														
RAD51C	0	MSKCC	GRCh37	17	56772321	56772321	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	24	340	0	ENST00000337432.4:c.175G>T	p.Glu59Ter	p.E59*	ENST00000337432	NM_058216.2	59	Gaa/Taa																																																																														
YES1	0	MSKCC	GRCh37	18	756761	756761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	34	414	0	ENST00000314574.4:c.67G>A	p.Glu23Lys	p.E23K	ENST00000314574	NM_005433.3	23	Gag/Aag																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39570468	39570468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	23	220	0	ENST00000262039.4:c.664C>T	p.Arg222Ter	p.R222*	ENST00000262039	NM_002647.2	222	Cga/Tga																																																																														
MALT1	0	MSKCC	GRCh37	18	56363605	56363605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	14	190	0	ENST00000348428.3:c.384G>T	p.Lys128Asn	p.K128N	ENST00000348428	NM_006785.3	128	aaG/aaT																																																																														
INSR	0	MSKCC	GRCh37	19	7122781	7122781	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	24	412	0	ENST00000302850.5:c.3373A>C	p.Asn1125His	p.N1125H	ENST00000302850	NM_000208.2	1125	Aat/Cat																																																																														
DNMT1	0	MSKCC	GRCh37	19	10265391	10265391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	46	551	0	ENST00000340748.4:c.1655G>A	p.Arg552Gln	p.R552Q	ENST00000340748		552	cGa/cAa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602848	10602848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	56	693	2	ENST00000171111.5:c.730G>A	p.Glu244Lys	p.E244K	ENST00000171111	NM_203500.1	244	Gag/Aag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271550	15271550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	47	707	3	ENST00000263388.2:c.6889C>A	p.Pro2297Thr	p.P2297T	ENST00000263388	NM_000435.2	2297	Ccc/Acc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257373	19257373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	30	545	0	ENST00000162023.5:c.760G>T	p.Gly254Cys	p.G254C	ENST00000162023		254	Ggc/Tgc																																																																														
POLD1	0	MSKCC	GRCh37	19	50905959	50905959	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201010746		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	37	606	3	ENST00000440232.2:c.931C>T	p.Arg311Cys	p.R311C	ENST00000440232	NM_002691.3	311	Cgc/Tgc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467155	25467155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	27	442	0	ENST00000264709.3:c.1720G>A	p.Ala574Thr	p.A574T	ENST00000264709	NM_175629.2	574	Gca/Aca																																																																														
SOS1	0	MSKCC	GRCh37	2	39213369	39213369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	57	636	0	ENST00000402219.2:c.3598G>T	p.Asp1200Tyr	p.D1200Y	ENST00000402219	NM_005633.3	1200	Gac/Tac																																																																														
SOS1	0	MSKCC	GRCh37	2	39250080	39250080	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	38	442	0	ENST00000402219.2:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000402219	NM_005633.3	497	Cga/Tga																																																																														
EPAS1	0	MSKCC	GRCh37	2	46602873	46602873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	45	566	0	ENST00000263734.3:c.931G>A	p.Ala311Thr	p.A311T	ENST00000263734	NM_001430.4	311	Gca/Aca																																																																														
XPO1	0	MSKCC	GRCh37	2	61710198	61710198	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	45	326	0	ENST00000401558.2:c.2706A>C	p.Gln902His	p.Q902H	ENST00000401558	NM_003400.3	902	caA/caC																																																																														
XPO1	0	MSKCC	GRCh37	2	61719835	61719835	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	32	490	0	ENST00000401558.2:c.1433A>G	p.Glu478Gly	p.E478G	ENST00000401558	NM_003400.3	478	gAg/gGg																																																																														
XPO1	0	MSKCC	GRCh37	2	61725926	61725926	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	26	400	0	ENST00000401558.2:c.641A>C	p.Glu214Ala	p.E214A	ENST00000401558	NM_003400.3	214	gAa/gCa																																																																														
TMEM127	0	MSKCC	GRCh37	2	96920658	96920658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	30	440	0	ENST00000258439.3:c.322C>A	p.Leu108Ile	p.L108I	ENST00000258439	NM_001193304.2	108	Ctc/Atc																																																																														
CASP8	0	MSKCC	GRCh37	2	202136254	202136254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	56	448	1	ENST00000358485.4:c.498G>T	p.Gln166His	p.Q166H	ENST00000358485	NM_001080125.1	166	caG/caT																																																																														
BARD1	0	MSKCC	GRCh37	2	215632309	215632309	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	32	458	0	ENST00000260947.4:c.1465A>G	p.Thr489Ala	p.T489A	ENST00000260947	NM_000465.2	489	Acc/Gcc																																																																														
PAK7	0	MSKCC	GRCh37	20	9525053	9525053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	31	440	0	ENST00000353224.5:c.1832C>T	p.Ala611Val	p.A611V	ENST00000353224	NM_177990.2	611	gCc/gTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546695	9546695	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	15	266	0	ENST00000353224.5:c.1327G>T	p.Gly443Ter	p.G443*	ENST00000353224	NM_177990.2	443	Gga/Tga																																																																														
PAK7	0	MSKCC	GRCh37	20	9624953	9624953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	21	224	0	ENST00000353224.5:c.24G>T	p.Lys8Asn	p.K8N	ENST00000353224	NM_177990.2	8	aaG/aaT																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31394020	31394020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	29	345	3	ENST00000328111.2:c.2307G>T	p.Lys769Asn	p.K769N	ENST00000328111	NM_006892.3	769	aaG/aaT																																																																														
NCOA3	0	MSKCC	GRCh37	20	46262828	46262828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148666287		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	32	415	0	ENST00000371998.3:c.1001G>A	p.Arg334Gln	p.R334Q	ENST00000371998		334	cGa/cAa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62290789	62290789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	18	197	0	ENST00000508582.2:c.34G>T	p.Asp12Tyr	p.D12Y	ENST00000508582		12	Gac/Tac																																																																														
RTEL1	0	MSKCC	GRCh37	20	62316900	62316900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	28	538	1	ENST00000508582.2:c.1288G>A	p.Glu430Lys	p.E430K	ENST00000508582		430	Gag/Aag																																																																														
CRKL	0	MSKCC	GRCh37	22	21272445	21272445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	46	619	1	ENST00000354336.3:c.223G>T	p.Asp75Tyr	p.D75Y	ENST00000354336	NM_005207.3	75	Gac/Tac																																																																														
NF2	0	MSKCC	GRCh37	22	30064325	30064325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	19	257	0	ENST00000338641.4:c.889C>A	p.Leu297Ile	p.L297I	ENST00000338641	NM_000268.3	297	Ctc/Atc																																																																														
EP300	0	MSKCC	GRCh37	22	41521967	41521967	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	36	538	0	ENST00000263253.7:c.829A>C	p.Lys277Gln	p.K277Q	ENST00000263253	NM_001429.3	277	Aaa/Caa																																																																														
SETD2	0	MSKCC	GRCh37	3	47108588	47108588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	30	393	0	ENST00000409792.3:c.6081G>T	p.Lys2027Asn	p.K2027N	ENST00000409792	NM_014159.6	2027	aaG/aaT																																																																														
MST1	0	MSKCC	GRCh37	3	49725045	49725045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	41	545	0	ENST00000449682.2:c.299A>G	p.His100Arg	p.H100R	ENST00000449682	NM_020998.3	100	cAc/cGc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52582227	52582227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	23	248	0	ENST00000394830.3:c.4601C>T	p.Ser1534Leu	p.S1534L	ENST00000394830	NM_018313.4	1534	tCg/tTg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71096156	71096156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	28	298	0	ENST00000318789.4:c.601C>T	p.Arg201Cys	p.R201C	ENST00000318789	NM_032682.5	201	Cgc/Tgc																																																																														
SHQ1	0	MSKCC	GRCh37	3	72799478	72799478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	40	567	0	ENST00000325599.8:c.1691G>A	p.Ser564Asn	p.S564N	ENST00000325599	NM_018130.2	564	aGc/aAc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528631	89528631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	20	221	0	ENST00000336596.2:c.2931G>T	p.Lys977Asn	p.K977N	ENST00000336596	NM_005233.5	977	aaG/aaT																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138453494	138453494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	24	374	0	ENST00000289153.2:c.954G>T	p.Lys318Asn	p.K318N	ENST00000289153	NM_006219.2	318	aaG/aaT																																																																														
ATR	0	MSKCC	GRCh37	3	142183952	142183952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	29	410	0	ENST00000350721.4:c.7028C>A	p.Ser2343Tyr	p.S2343Y	ENST00000350721	NM_001184.3	2343	tCc/tAc																																																																														
ATR	0	MSKCC	GRCh37	3	142226778	142226778	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	23	288	0	ENST00000350721.4:c.5026T>G	p.Leu1676Val	p.L1676V	ENST00000350721	NM_001184.3	1676	Tta/Gta																																																																														
ATR	0	MSKCC	GRCh37	3	142261513	142261513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	43	397	0	ENST00000350721.4:c.3444G>T	p.Lys1148Asn	p.K1148N	ENST00000350721	NM_001184.3	1148	aaG/aaT																																																																														
ATR	0	MSKCC	GRCh37	3	142281400	142281400	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	45	491	1	ENST00000350721.4:c.844G>T	p.Glu282Ter	p.E282*	ENST00000350721	NM_001184.3	282	Gaa/Taa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178941913	178941913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	35	409	0	ENST00000263967.3:c.2232C>A	p.Phe744Leu	p.F744L	ENST00000263967	NM_006218.2	744	ttC/ttA																																																																														
SOX2	0	MSKCC	GRCh37	3	181430292	181430292	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	21	288	0	ENST00000325404.1:c.144C>A	p.Phe48Leu	p.F48L	ENST00000325404	NM_003106.3	48	ttC/ttA																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191157	185191157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	27	335	0	ENST00000265026.3:c.2038C>T	p.Arg680Trp	p.R680W	ENST00000265026	NM_004721.4	680	Cgg/Tgg																																																																														
TP63	0	MSKCC	GRCh37	3	189590657	189590657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	30	364	1	ENST00000264731.3:c.1222C>T	p.Arg408Cys	p.R408C	ENST00000264731	NM_003722.4	408	Cgt/Tgt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1801220	1801220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	46	601	1	ENST00000260795.2:c.349G>A	p.Val117Ile	p.V117I	ENST00000260795		117	Gta/Ata																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902934	1902934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	56	506	0	ENST00000382891.5:c.553G>A	p.Glu185Lys	p.E185K	ENST00000382891	NM_133335.3	185	Gaa/Aaa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127484	55127484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	39	529	0	ENST00000257290.5:c.272C>T	p.Ser91Leu	p.S91L	ENST00000257290	NM_006206.4	91	tCg/tTg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66230807	66230807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	29	368	0	ENST00000273854.3:c.2164C>A	p.Leu722Ile	p.L722I	ENST00000273854	NM_004439.5	722	Cta/Ata																																																																														
EPHA5	0	MSKCC	GRCh37	4	66233089	66233089	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	31	296	0	ENST00000273854.3:c.1910T>C	p.Phe637Ser	p.F637S	ENST00000273854	NM_004439.5	637	tTt/tCt																																																																														
FAM175A	0	MSKCC	GRCh37	4	84391522	84391522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	31	389	0	ENST00000321945.7:c.310C>T	p.Arg104Cys	p.R104C	ENST00000321945	NM_139076.2	104	Cgt/Tgt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143007331	143007331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	37	382	0	ENST00000262992.4:c.2453G>T	p.Arg818Ile	p.R818I	ENST00000262992	NM_001101669.1	818	aGa/aTa																																																																														
FAT1	0	MSKCC	GRCh37	4	187542600	187542600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	346	1	ENST00000441802.2:c.5140C>T	p.Pro1714Ser	p.P1714S	ENST00000441802	NM_005245.3	1714	Cca/Tca																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950735	38950735	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	24	247	0	ENST00000357387.3:c.3215T>G	p.Phe1072Cys	p.F1072C	ENST00000357387	NM_152756.3	1072	tTt/tGt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67590492	67590492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	31	268	0	ENST00000274335.5:c.1554G>T	p.Glu518Asp	p.E518D	ENST00000274335		518	gaG/gaT																																																																														
RASA1	0	MSKCC	GRCh37	5	86649005	86649005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	33	375	0	ENST00000274376.6:c.1285G>A	p.Glu429Lys	p.E429K	ENST00000274376	NM_002890.2	429	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112177230	112177230	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs180727920		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	16	297	0	ENST00000257430.4:c.5939A>G	p.Asn1980Ser	p.N1980S	ENST00000257430	NM_000038.5	1980	aAc/aGc																																																																														
RAD50	0	MSKCC	GRCh37	5	131925341	131925341	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	12	166	0	ENST00000265335.6:c.1264G>T	p.Glu422Ter	p.E422*	ENST00000265335		422	Gag/Tag																																																																														
MDC1	0	MSKCC	GRCh37	6	30670921	30670921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	49	544	1	ENST00000376406.3:c.5825G>A	p.Gly1942Glu	p.G1942E	ENST00000376406	NM_014641.2	1942	gGg/gAg																																																																														
TAP2	0	MSKCC	GRCh37	6	32800592	32800592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	43	540	0	ENST00000374899.4:c.955C>T	p.Arg319Trp	p.R319W	ENST00000374899	NM_018833.2	319	Cgg/Tgg																																																																														
TAP1	0	MSKCC	GRCh37	6	32818213	32818213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs143800384		P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	51	506	2	ENST00000354258.4:c.1312C>T	p.Arg438Ter	p.R438*	ENST00000354258	NM_000593.5	438	Cga/Tga																																																																														
PRDM1	0	MSKCC	GRCh37	6	106547182	106547182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	18	196	0	ENST00000369096.4:c.419C>T	p.Ser140Phe	p.S140F	ENST00000369096	NM_001198.3	140	tCc/tTc																																																																														
SESN1	0	MSKCC	GRCh37	6	109323533	109323533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	37	503	0	ENST00000436639.2:c.293G>T	p.Arg98Ile	p.R98I	ENST00000436639	NM_014454.2	98	aGa/aTa																																																																														
ROS1	0	MSKCC	GRCh37	6	117665230	117665230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	19	254	0	ENST00000368508.3:c.4517G>T	p.Arg1506Ile	p.R1506I	ENST00000368508	NM_002944.2	1506	aGa/aTa																																																																														
ROS1	0	MSKCC	GRCh37	6	117715853	117715853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	26	368	0	ENST00000368508.3:c.905G>T	p.Arg302Ile	p.R302I	ENST00000368508	NM_002944.2	302	aGa/aTa																																																																														
ESR1	0	MSKCC	GRCh37	6	152129446	152129446	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	20	382	1	ENST00000206249.3:c.399G>T	p.Glu133Asp	p.E133D	ENST00000206249	NM_000125.3	133	gaG/gaT																																																																														
ESR1	0	MSKCC	GRCh37	6	152265359	152265359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	27	453	0	ENST00000206249.3:c.812G>T	p.Arg271Ile	p.R271I	ENST00000206249	NM_000125.3	271	aGa/aTa																																																																														
PMS2	0	MSKCC	GRCh37	7	6026895	6026895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	15	240	0	ENST00000265849.7:c.1501G>A	p.Val501Met	p.V501M	ENST00000265849	NM_000535.5	501	Gtg/Atg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513165	106513165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	20	244	0	ENST00000359195.3:c.2069G>T	p.Arg690Ile	p.R690I	ENST00000359195	NM_002649.2	690	aGa/aTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151836798	151836798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	33	461	0	ENST00000262189.6:c.14422G>A	p.Glu4808Lys	p.E4808K	ENST00000262189	NM_170606.2	4808	Gaa/Aaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	152055755	152055755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	33	352	0	ENST00000262189.6:c.167G>A	p.Arg56Gln	p.R56Q	ENST00000262189	NM_170606.2	56	cGa/cAa																																																																														
FGFR1	0	MSKCC	GRCh37	8	38315030	38315030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	51	571	1	ENST00000425967.3:c.34G>A	p.Glu12Lys	p.E12K	ENST00000425967	NM_001174067.1	12	Gag/Aag																																																																														
PREX2	0	MSKCC	GRCh37	8	68992765	68992765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	35	518	2	ENST00000288368.4:c.1730G>A	p.Arg577Gln	p.R577Q	ENST00000288368	NM_024870.2	577	cGa/cAa																																																																														
JAK2	0	MSKCC	GRCh37	9	5054652	5054652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	28	352	1	ENST00000381652.3:c.704G>T	p.Arg235Ile	p.R235I	ENST00000381652	NM_004972.3	235	aGa/aTa																																																																														
JAK2	0	MSKCC	GRCh37	9	5080532	5080532	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	14	239	0	ENST00000381652.3:c.2284-1G>T		p.X762_splice	ENST00000381652	NM_004972.3	762																																																																															
PTPRD	0	MSKCC	GRCh37	9	8339020	8339020	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	25	424	0	ENST00000356435.5:c.5281G>T	p.Glu1761Ter	p.E1761*	ENST00000356435		1761	Gaa/Taa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	27	421	0	ENST00000304494.5:c.270C>A	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttA																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	27	421	0	ENST00000304494.5:c.270C>A	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttA																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	27	421	0	ENST00000304494.5:c.270C>A	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttA																																																																														
BCOR	0	MSKCC	GRCh37	X	39911630	39911630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	52	469	0	ENST00000378444.4:c.5000C>T	p.Ser1667Leu	p.S1667L	ENST00000378444	NM_001123385.1	1667	tCg/tTg																																																																														
BCOR	0	MSKCC	GRCh37	X	39933985	39933985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	47	605	3	ENST00000378444.4:c.614C>A	p.Pro205His	p.P205H	ENST00000378444	NM_001123385.1	205	cCt/cAt																																																																														
GATA1	0	MSKCC	GRCh37	X	48650370	48650370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	31	564	2	ENST00000376670.3:c.340G>A	p.Glu114Lys	p.E114K	ENST00000376670	NM_002049.3	114	Gag/Aag																																																																														
AMER1	0	MSKCC	GRCh37	X	63410499	63410499	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	39	533	0	ENST00000330258.3:c.2668A>C	p.Asn890His	p.N890H	ENST00000330258	NM_152424.3	890	Aac/Cac																																																																														
AR	0	MSKCC	GRCh37	X	66765677	66765677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	51	636	0	ENST00000374690.3:c.689C>T	p.Ser230Leu	p.S230L	ENST00000374690	NM_000044.3	230	tCg/tTg																																																																														
AR	0	MSKCC	GRCh37	X	66766198	66766198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	23	342	0	ENST00000374690.3:c.1210G>A	p.Ala404Thr	p.A404T	ENST00000374690	NM_000044.3	404	Gcg/Acg																																																																														
AR	0	MSKCC	GRCh37	X	66931446	66931446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	37	545	0	ENST00000374690.3:c.2088C>A	p.Asp696Glu	p.D696E	ENST00000374690	NM_000044.3	696	gaC/gaA																																																																														
MED12	0	MSKCC	GRCh37	X	70352321	70352321	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	39	556	0	ENST00000374080.3:c.4348G>T	p.Glu1450Ter	p.E1450*	ENST00000374080		1450	Gaa/Taa																																																																														
ATRX	0	MSKCC	GRCh37	X	76814139	76814139	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	18	260	0	ENST00000373344.5:c.6504+1G>T		p.X2168_splice	ENST00000373344	NM_000489.3	2168																																																																															
ATRX	0	MSKCC	GRCh37	X	76888725	76888725	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	31	368	1	ENST00000373344.5:c.5104G>T	p.Glu1702Ter	p.E1702*	ENST00000373344	NM_000489.3	1702	Gaa/Taa																																																																														
ATRX	0	MSKCC	GRCh37	X	76890143	76890143	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	52	492	0	ENST00000373344.5:c.4751A>C	p.Lys1584Thr	p.K1584T	ENST00000373344	NM_000489.3	1584	aAa/aCa																																																																														
ATRX	0	MSKCC	GRCh37	X	76912098	76912098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	38	461	0	ENST00000373344.5:c.4166T>G	p.Val1389Gly	p.V1389G	ENST00000373344	NM_000489.3	1389	gTt/gGt																																																																														
ATRX	0	MSKCC	GRCh37	X	76939604	76939604	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	33	468	0	ENST00000373344.5:c.1144G>T	p.Glu382Ter	p.E382*	ENST00000373344	NM_000489.3	382	Gaa/Taa																																																																														
BTK	0	MSKCC	GRCh37	X	100604881	100604881	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	34	416	0	ENST00000308731.7:c.1972G>T	p.Glu658Ter	p.E658*	ENST00000308731	NM_000061.2	658	Gaa/Taa																																																																														
XIAP	0	MSKCC	GRCh37	X	123019817	123019817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	50	427	0	ENST00000355640.3:c.305C>T	p.Ala102Val	p.A102V	ENST00000355640		102	gCc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	98	430	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	182	335	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553591	106553591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	127	310	0	ENST00000369096.4:c.1556C>T	p.Ala519Val	p.A519V	ENST00000369096	NM_001198.3	519	gCg/gTg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	246	415	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	0	MSKCC	GRCh37	5	112137036	112137036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	172	468	0	ENST00000257430.4:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000257430	NM_000038.5	264	Caa/Taa																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101907037	101907037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	175	288	0	ENST00000374994.4:c.997G>A	p.Asp333Asn	p.D333N	ENST00000374994	NM_004612.2	333	Gat/Aat																																																																														
PTPN11	0	MSKCC	GRCh37	12	112926828	112926828	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	204	550	0	ENST00000351677.2:c.1448G>C	p.Gly483Ala	p.G483A	ENST00000351677	NM_002834.3	483	gGt/gCt																																																																														
BLM	0	MSKCC	GRCh37	15	91293198	91293198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	155	378	0	ENST00000355112.3:c.700G>A	p.Asp234Asn	p.D234N	ENST00000355112	NM_000057.2	234	Gat/Aat																																																																														
APC	0	MSKCC	GRCh37	5	112116602	112116602	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0027655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	140	342	0	ENST00000257430.4:c.645+2T>G		p.X215_splice	ENST00000257430	NM_000038.5	215																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0027658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	29	531	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0027658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	85	446	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0027658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	85	446	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7572986	7572986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	65	443	0	ENST00000269305.4:c.1123C>T	p.Gln375Ter	p.Q375*	ENST00000269305	NM_001126112.2	375	Cag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40979319	40979319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	75	540	0	ENST00000373198.4:c.1814C>T	p.Thr605Met	p.T605M	ENST00000373198	NM_133170.3	605	aCg/aTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0027658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	85	446	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099989	27099989	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0027658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	132	535	0	ENST00000324856.7:c.3866+2T>C		p.X1289_splice	ENST00000324856	NM_006015.4	1289																																																																															
MGA	0	MSKCC	GRCh37	15	42046750	42046750	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	85	527	1	ENST00000219905.7:c.7124A>G	p.Gln2375Arg	p.Q2375R	ENST00000219905	NM_001164273.1	2375	cAg/cGg																																																																														
CBFB	0	MSKCC	GRCh37	16	67116172	67116173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	91	481	0	ENST00000412916.2:c.459dup	p.Glu154Ter	p.E154*	ENST00000412916		152	-/T																																																																														
ROS1	0	MSKCC	GRCh37	6	117683788	117683788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	54	387	0	ENST00000368508.3:c.3359C>G	p.Pro1120Arg	p.P1120R	ENST00000368508	NM_002944.2	1120	cCc/cGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	138	574	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0027667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	51	285	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																														
H3F3A	0	MSKCC	GRCh37	1	226252075	226252075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	22	132	0	ENST00000366813.1:c.23C>G	p.Ala8Gly	p.A8G	ENST00000366813		8	gCc/gGc																																																																														
SETD8	0	MSKCC	GRCh37	12	123874013	123874013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	33	49	0	ENST00000330479.4:c.44C>T	p.Ala15Val	p.A15V	ENST00000330479	NM_020382.3	15	gCg/gTg																																																																														
SETD2	0	MSKCC	GRCh37	3	47147545	47147709	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCACTCGAGCTTTAAACTCTTTATGATCGAGTACCTCTCCACAATATTCTAGGACAAAGGTGTTCCTGCAAACCAAAAGGAAAAAAATAGCACTTCCTACCTAGGAGCAGTAGGGAAAACATATATGCTCAGGCAAAAATAAGGAATTTAAATAAATACTGCAA	TTCACTCGAGCTTTAAACTCTTTATGATCGAGTACCTCTCCACAATATTCTAGGACAAAGGTGTTCCTGCAAACCAAAAGGAAAAAAATAGCACTTCCTACCTAGGAGCAGTAGGGAAAACATATATGCTCAGGCAAAAATAAGGAATTTAAATAAATACTGCAA	-			P-0027667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	44	434	0	ENST00000409792.3:c.4716-99_4781del		p.X1572_splice	ENST00000409792	NM_014159.6	1572																																																																															
EGFR	0	MSKCC	GRCh37	7	55242462	55242462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	132	490	0	ENST00000275493.2:c.2232C>G	p.Ile744Met	p.I744M	ENST00000275493	NM_005228.3	744	atC/atG																																																																														
VHL	0	MSKCC	GRCh37	3	10188240	10188240	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	312	613	0	ENST00000256474.2:c.383T>A	p.Leu128His	p.L128H	ENST00000256474	NM_000551.3	128	cTt/cAt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188187	32188187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	229	446	1	ENST00000375023.3:c.1154G>A	p.Arg385His	p.R385H	ENST00000375023	NM_004557.3	385	cGc/cAc																																																																														
AGO2	0	MSKCC	GRCh37	8	141557687	141557687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	202	588	0	ENST00000220592.5:c.1628C>G	p.Ala543Gly	p.A543G	ENST00000220592	NM_012154.3	543	gCc/gGc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53227632	53227672	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGCACCTTATGTGTGCCCTAACTCCTCACGCTGTCATACC	CAGCACCTTATGTGTGCCCTAACTCCTCACGCTGTCATACC	-			P-0028103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	190	135	0	ENST00000375401.3:c.2516_2516+40del		p.X839_splice	ENST00000375401	NM_004187.3	839																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0028106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	101	414	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575200	48575200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	64	313	0	ENST00000342988.3:c.394C>T	p.His132Tyr	p.H132Y	ENST00000342988	NM_005359.5	132	Cac/Tac																																																																														
RASA1	0	MSKCC	GRCh37	5	86672814	86672816	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0028106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	84	367	0	ENST00000274376.6:c.2307_2309del	p.Leu770del	p.L770del	ENST00000274376	NM_002890.2	767	tcGTTg/tcg																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553033	106553033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	151	524	0	ENST00000369096.4:c.998C>T	p.Thr333Ile	p.T333I	ENST00000369096	NM_001198.3	333	aCc/aTc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44820486	44820527	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GGCTTTATTTTTTGCTTACATATTTGTATTTTTTTATTTCTA	GGCTTTATTTTTTGCTTACATATTTGTATTTTTTTATTTCTA	-			P-0028106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	21	96	0	ENST00000377967.4:c.226-39_228del		p.X76_splice	ENST00000377967	NM_021140.2	76																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	95	398	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FLT1	0	MSKCC	GRCh37	13	28877387	28877387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	65	461	0	ENST00000282397.4:c.3934G>A	p.Ala1312Thr	p.A1312T	ENST00000282397	NM_002019.4	1312	Gct/Act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	128	422	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0028109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	106	295	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0028109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	106	295	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	64	502	1	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845937	72845937	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	30	298	1	ENST00000268489.5:c.3530C>T	p.Ala1177Val	p.A1177V	ENST00000268489	NM_006885.3	1177	gCa/gTa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44935980	44935980	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	109	229	0	ENST00000377967.4:c.2741T>A	p.Leu914Ter	p.L914*	ENST00000377967	NM_021140.2	914	tTg/tAg																																																																														
PAK1	0	MSKCC	GRCh37	11	77051721	77051721	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	133	484	0	ENST00000356341.3:c.1086T>G	p.Asp362Glu	p.D362E	ENST00000356341	NM_002576.4	362	gaT/gaG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	77	432	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790183	40790183	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	94	290	1	ENST00000373198.4:c.2549-1G>T		p.X850_splice	ENST00000373198	NM_133170.3	850																																																																															
SETD2	0	MSKCC	GRCh37	3	47165557	47165557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	141	468	0	ENST00000409792.3:c.569C>T	p.Pro190Leu	p.P190L	ENST00000409792	NM_014159.6	190	cCg/cTg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508995	106508995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	95	344	0	ENST00000359195.3:c.989C>A	p.Thr330Lys	p.T330K	ENST00000359195	NM_002649.2	330	aCg/aAg																																																																														
SOX17	0	MSKCC	GRCh37	8	55370762	55370762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	116	335	1	ENST00000297316.4:c.64G>T	p.Ala22Ser	p.A22S	ENST00000297316	NM_022454.3	22	Gcg/Tcg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900329	101900329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	49	326	0	ENST00000374994.4:c.763C>A	p.Arg255Ser	p.R255S	ENST00000374994	NM_004612.2	255	Cgt/Agt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10291143	10291143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	101	610	0	ENST00000340748.4:c.328G>A	p.Gly110Arg	p.G110R	ENST00000340748		110	Ggg/Agg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120465399	120465399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0028113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	82	525	0	ENST00000256646.2:c.4862C>A	p.Ser1621Tyr	p.S1621Y	ENST00000256646	NM_024408.3	1621	tCt/tAt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151871279	151871279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	68	448	0	ENST00000262189.6:c.9311T>C	p.Leu3104Pro	p.L3104P	ENST00000262189	NM_170606.2	3104	cTt/cCt																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858000	152858001	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	13	203	0	ENST00000406277.2:c.614dup	p.Pro206AlafsTer7	p.P206Afs*7	ENST00000406277	NM_152274.4	205	gtg/gtTg																																																																														
KIT	0	MSKCC	GRCh37	4	55593667	55593669	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0028138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	496	529	0	ENST00000288135.5:c.1735_1737del	p.Asp579del	p.D579del	ENST00000288135	NM_000222.2	578	tATGat/tat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	248	568	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	252	488	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	162	295	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101300	27101300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	271	613	0	ENST00000324856.7:c.4582C>T	p.Arg1528Ter	p.R1528*	ENST00000324856	NM_006015.4	1528	Cga/Tga																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984782	11984782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	73	434	0	ENST00000353533.5:c.328C>T	p.Arg110Ter	p.R110*	ENST00000353533	NM_003010.3	110	Cga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425154	49425154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	326	777	1	ENST00000301067.7:c.13334C>A	p.Thr4445Asn	p.T4445N	ENST00000301067	NM_003482.3	4445	aCc/aAc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39570448	39570448	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	101	208	0	ENST00000262039.4:c.644T>G	p.Met215Arg	p.M215R	ENST00000262039	NM_002647.2	215	aTg/aGg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163299	32163299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	366	744	2	ENST00000375023.3:c.5927C>A	p.Pro1976Gln	p.P1976Q	ENST00000375023	NM_004557.3	1976	cCg/cAg																																																																														
MED12	0	MSKCC	GRCh37	X	70339715	70339746	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTAGCCAAAAAGGTAAGGTACTGTTTCCTGT	ACTAGCCAAAAAGGTAAGGTACTGTTTCCTGT	-			P-0028140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	208	574	0	ENST00000374080.3:c.384_396+19del		p.X128_splice	ENST00000374080		128																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	62	461	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	72	459	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913252	39913253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs797044647		P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	42	466	0	ENST00000378444.4:c.4862dup	p.Gly1622ArgfsTer7	p.G1622Rfs*7	ENST00000378444	NM_001123385.1	1621	cca/ccCa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	76	501	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	44	233	0	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
PARK2	0	MSKCC	GRCh37	6	161781121	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	81	384	0	ENST00000366898.1:c.1283dup	p.Asn428LysfsTer141	p.N428Kfs*141	ENST00000366898	NM_004562.2	428	aat/aaAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	130	370	1	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
ROS1	6098	MSKCC	GRCh37	6	117681119	117681120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs748436511		P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	54	407	0	ENST00000368508.3:c.3500dup	p.Leu1167PhefsTer26	p.L1167Ffs*26	ENST00000368508	NM_002944.2	1167	tta/ttTa																																																																														
PTEN	0	MSKCC	GRCh37	10	89720721	89720721	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	18	137	0	ENST00000371953.3:c.875del	p.Asn292MetfsTer15	p.N292Mfs*15	ENST00000371953	NM_000314.4	291	gAa/ga																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841258	15841258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	81	399	0	ENST00000307771.7:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000307771	NM_005089.3	448	Cgc/Tgc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	19	215	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138382857	138382857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	63	365	0	ENST00000289153.2:c.2687G>A	p.Arg896Gln	p.R896Q	ENST00000289153	NM_006219.2	896	cGa/cAa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	64	536	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
SOS1	0	MSKCC	GRCh37	2	39224440	39224440	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	60	449	0	ENST00000402219.2:c.2918A>T	p.Gln973Leu	p.Q973L	ENST00000402219	NM_005633.3	973	cAg/cTg																																																																														
CD79B	0	MSKCC	GRCh37	17	62007551	62007551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	80	560	0	ENST00000392795.3:c.316G>A	p.Ala106Thr	p.A106T	ENST00000392795	NM_001039933.1	106	Gcc/Acc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793363	242793363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	90	586	0	ENST00000334409.5:c.714del	p.Val239CysfsTer39	p.V239Cfs*39	ENST00000334409	NM_005018.2	238	ccC/cc																																																																														
TET2	0	MSKCC	GRCh37	4	106156169	106156169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	55	326	0	ENST00000380013.4:c.1070G>A	p.Ser357Asn	p.S357N	ENST00000380013	NM_001127208.2	357	aGc/aAc																																																																														
CTCF	0	MSKCC	GRCh37	16	67655481	67655481	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	68	391	0	ENST00000264010.4:c.1348delA	p.Ser450ValfsTer61	p.S450Vfs*61	ENST00000264010	NM_006565.3	448	cgA/cg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101379	27101379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	86	410	0	ENST00000324856.7:c.4661C>T	p.Pro1554Leu	p.P1554L	ENST00000324856	NM_006015.4	1554	cCa/cTa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942228	71942228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	56	420	0	ENST00000298229.2:c.1492C>A	p.Arg498Ser	p.R498S	ENST00000298229	NM_001567.3	498	Cgc/Agc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18719992	18719992	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	32	262	0	ENST00000266497.5:c.3888+1G>A		p.X1296_splice	ENST00000266497		1296																																																																															
KMT2D	0	MSKCC	GRCh37	12	49445202	49445203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	92	636	0	ENST00000301067.7:c.2263dup	p.Arg755ProfsTer3	p.R755Pfs*3	ENST00000301067	NM_003482.3	755	cgg/cCgg																																																																														
SLX4	0	MSKCC	GRCh37	16	3639728	3639728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	91	656	0	ENST00000294008.3:c.3911T>C	p.Val1304Ala	p.V1304A	ENST00000294008	NM_032444.2	1304	gTc/gCc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830520	72830521	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	77	421	0	ENST00000268489.5:c.6060dup	p.Gln2021ThrfsTer8	p.Q2021Tfs*8	ENST00000268489	NM_006885.3	2020	-/A																																																																														
CCNE1	0	MSKCC	GRCh37	19	30311741	30311741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	41	343	0	ENST00000262643.3:c.595G>A	p.Ala199Thr	p.A199T	ENST00000262643	NM_001238.2	199	Gca/Aca																																																																														
ERCC3	0	MSKCC	GRCh37	2	128046937	128046937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	77	457	0	ENST00000285398.2:c.798G>T	p.Gln266His	p.Q266H	ENST00000285398	NM_000122.1	266	caG/caT																																																																														
ERCC3	0	MSKCC	GRCh37	2	128047807	128047807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	62	411	0	ENST00000285398.2:c.514C>T	p.His172Tyr	p.H172Y	ENST00000285398	NM_000122.1	172	Cac/Tac																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42845287	42845287	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	70	497	0	ENST00000398585.3:c.975del	p.Glu326SerfsTer4	p.E326Sfs*4	ENST00000398585	NM_001135099.1	325	ccC/cc																																																																														
EP300	0	MSKCC	GRCh37	22	41573407	41573407	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	82	590	0	ENST00000263253.7:c.5692C>T	p.Gln1898Ter	p.Q1898*	ENST00000263253	NM_001429.3	1898	Cag/Tag																																																																														
BCL6	0	MSKCC	GRCh37	3	187444560	187444560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	91	399	0	ENST00000232014.4:c.1667G>A	p.Arg556His	p.R556H	ENST00000232014	NM_001130845.1	556	cGc/cAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187530441	187530441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	41	258	0	ENST00000441802.2:c.10102A>G	p.Ser3368Gly	p.S3368G	ENST00000441802	NM_005245.3	3368	Agc/Ggc																																																																														
CCND3	0	MSKCC	GRCh37	6	41905089	41905089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	67	364	0	ENST00000372991.4:c.458C>T	p.Ala153Val	p.A153V	ENST00000372991	NM_001760.3	153	gCt/gTt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100328	157100328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	32	176	0	ENST00000346085.5:c.1265T>C	p.Leu422Pro	p.L422P	ENST00000346085	NM_020732.3	422	cTg/cCg																																																																														
TCEB1	0	MSKCC	GRCh37	8	74859050	74859050	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	61	341	0	ENST00000284811.8:c.154T>G	p.Phe52Val	p.F52V	ENST00000284811		52	Ttt/Gtt																																																																														
BCOR	0	MSKCC	GRCh37	X	39932521	39932521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	94	636	1	ENST00000378444.4:c.2078C>A	p.Pro693His	p.P693H	ENST00000378444	NM_001123385.1	693	cCt/cAt																																																																														
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	158	647	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0028143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	158	467	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ESR1	0	MSKCC	GRCh37	6	152265574	152265574	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	232	521	0	ENST00000206249.3:c.1027A>T	p.Met343Leu	p.M343L	ENST00000206249	NM_000125.3	343	Atg/Ttg																																																																														
AMER1	0	MSKCC	GRCh37	X	63410873	63410873	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	226	716	0	ENST00000330258.3:c.2294C>G	p.Ala765Gly	p.A765G	ENST00000330258	NM_152424.3	765	gCc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	224	487	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	272	544	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	270	369	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	418	622	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	103	372	1	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	317	578	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	256	548	1	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	230	579	0	ENST00000371953.3:c.389G>C	p.Arg130Pro	p.R130P	ENST00000371953	NM_000314.4	130	cGa/cCa																																																																														
POLE	0	MSKCC	GRCh37	12	133236047	133236047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	291	481	0	ENST00000320574.5:c.3109C>T	p.Arg1037Cys	p.R1037C	ENST00000320574	NM_006231.2	1037	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	109	117	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	264	395	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	261	490	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851230	63851230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	80	652	0	ENST00000279873.7:c.2008C>T	p.His670Tyr	p.H670Y	ENST00000279873	NM_032199.2	670	Cat/Tat																																																																														
SYK	0	MSKCC	GRCh37	9	93606273	93606273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	94	726	3	ENST00000375746.1:c.98delG	p.Gly33AlafsTer2	p.G33Afs*2	ENST00000375746	NM_001174167.1	31	caG/ca																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100210	157100210	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	57	58	0	ENST00000346085.5:c.1151delG	p.Gly384AlafsTer46	p.G384Afs*46	ENST00000346085	NM_020732.3	383	Ggg/gg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	670	679	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	390	756	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
PMS2	0	MSKCC	GRCh37	7	6027156	6027157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	10	19	0	ENST00000265849.7:c.1239dup	p.Asp414ArgfsTer44	p.D414Rfs*44	ENST00000265849	NM_000535.5	413	-/A																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9776558	9776558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	105	662	1	ENST00000377346.4:c.661C>A	p.Leu221Met	p.L221M	ENST00000377346	NM_005026.3	221	Ctg/Atg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023182	27023182	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	105	119	0	ENST00000324856.7:c.289del	p.Glu97SerfsTer4	p.E97Sfs*4	ENST00000324856	NM_006015.4	96	gcG/gc																																																																														
CSDE1	0	MSKCC	GRCh37	1	115275301	115275301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	282	622	1	ENST00000438362.2:c.1112G>A	p.Arg371His	p.R371H	ENST00000438362	NM_001242891.1	371	cGt/cAt																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165656	118165656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	178	362	0	ENST00000369448.3:c.166C>T	p.Arg56Cys	p.R56C	ENST00000369448	NM_017709.3	56	Cgc/Tgc																																																																														
IRS2	0	MSKCC	GRCh37	13	110437755	110437755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	387	605	0	ENST00000375856.3:c.646G>A	p.Val216Met	p.V216M	ENST00000375856	NM_003749.2	216	Gtg/Atg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30068312	30068312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	27	378	0	ENST00000331968.5:c.2087A>G	p.His696Arg	p.H696R	ENST00000331968	NM_002742.2	696	cAc/cGc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061684	38061684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	183	322	0	ENST00000250448.2:c.305C>T	p.Thr102Met	p.T102M	ENST00000250448	NM_004496.3	102	aCg/aTg																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675482	40675482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	336	584	1	ENST00000249776.8:c.263G>A	p.Ser88Asn	p.S88N	ENST00000249776	NM_033286.3	88	aGc/aAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032078	10032078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	309	632	0	ENST00000330684.3:c.745A>G	p.Thr249Ala	p.T249A	ENST00000330684	NM_001134407.1	249	Acc/Gcc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349291	89349291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	80	981	1	ENST00000301030.4:c.3659G>T	p.Arg1220Met	p.R1220M	ENST00000301030	NM_001256183.1	1220	aGg/aTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70120318	70120318	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	584	814	1	ENST00000245479.2:c.1320C>A	p.Tyr440Ter	p.Y440*	ENST00000245479	NM_000346.3	440	taC/taA																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223814	36223814	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	363	839	0	ENST00000222270.7:c.6368del	p.Gly2123ValfsTer30	p.G2123Vfs*30	ENST00000222270	NM_014727.1	2122	Ggg/gg																																																																														
MSH6	0	MSKCC	GRCh37	2	48018081	48018083	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	277	576	0	ENST00000234420.5:c.278_280del	p.Gly93del	p.G93del	ENST00000234420	NM_000179.2	92	ccAGGa/cca																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468481	89468481	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	163	437	0	ENST00000336596.2:c.2015G>T	p.Ser672Ile	p.S672I	ENST00000336596	NM_005233.5	672	aGc/aTc																																																																														
WWTR1	0	MSKCC	GRCh37	3	149260247	149260247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	443	742	0	ENST00000360632.3:c.646G>T	p.Ala216Ser	p.A216S	ENST00000360632	NM_015472.4	216	Gca/Tca																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858164	27858167	+	frameshift_variant	Frame_Shift_Del	DEL	GCTC	GCTC	-			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	46	401	0	ENST00000359303.2:c.404_407del	p.Arg135HisfsTer?	p.R135Hfs*?	ENST00000359303	NM_003535.2	135	cGAGCa/ca																																																																														
ABL1	0	MSKCC	GRCh37	9	133759710	133759710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	255	546	0	ENST00000318560.5:c.2033G>A	p.Gly678Asp	p.G678D	ENST00000318560	NM_005157.4	678	gGc/gAc																																																																														
TSC1	0	MSKCC	GRCh37	9	135786481	135786481	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	259	577	0	ENST00000298552.3:c.1049C>G	p.Ser350Cys	p.S350C	ENST00000298552	NM_001162426.1	350	tCt/tGt																																																																														
CCND1	0	MSKCC	GRCh37	11	69466028	69466034	+	protein_altering_variant	In_Frame_Del	DEL	ACGTGCG	ACGTGCG	C			P-0028144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	412	655	0	ENST00000227507.2:c.866_872delinsC	p.Asp289_Arg291delinsAla	p.D289_R291delinsA	ENST00000227507	NM_053056.2	289	gACGTGCGg/gCg																																																																														
CCND2	0	MSKCC	GRCh37	12	4409047	4409047	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	20	270	0	ENST00000261254.3:c.742G>T	p.Glu248Ter	p.E248*	ENST00000261254	NM_001759.3	248	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	59	400	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88799378	88799378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	19	258	0	ENST00000360948.2:c.7G>T	p.Val3Phe	p.V3F	ENST00000360948	NM_001012338.2	3	Gtc/Ttc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81953124	81953124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	10	249	0	ENST00000359376.3:c.2090G>C	p.Arg697Pro	p.R697P	ENST00000359376	NM_002661.3	697	cGg/cCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	41	494	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111881483	111881483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	42	426	0	ENST00000393256.3:c.161G>T	p.Ser54Ile	p.S54I	ENST00000393256	NM_006538.4	54	aGc/aTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187541859	187541859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	15	409	0	ENST00000441802.2:c.5881G>T	p.Gly1961Cys	p.G1961C	ENST00000441802	NM_005245.3	1961	Ggc/Tgc																																																																														
NBN	0	MSKCC	GRCh37	8	90994967	90994967	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	13	330	0	ENST00000265433.3:c.154T>A	p.Phe52Ile	p.F52I	ENST00000265433	NM_002485.4	52	Ttt/Att																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	93	308	0				ENST00000310581	NM_198253.2																																																																																
MYCN	0	MSKCC	GRCh37	2	16085917	16085917	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs140276895		P-0028146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	26	475	0	ENST00000281043.3:c.1093C>G	p.Pro365Ala	p.P365A	ENST00000281043	NM_005378.4	365	Cca/Gca																																																																														
TP53	0	MSKCC	GRCh37	17	7579521	7579521	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	203	643	0	ENST00000269305.4:c.166delG	p.Glu56LysfsTer67	p.E56Kfs*67	ENST00000269305	NM_001126112.2	56	Gaa/aa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089718	27089718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	89	613	1	ENST00000324856.7:c.2674C>T	p.Arg892Trp	p.R892W	ENST00000324856	NM_006015.4	892	Cgg/Tgg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720624	89720665	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCTTTTCTTTTTTTTTTTTTTTAGGACAAAATGTTTCAC	TTTTCTTTTCTTTTTTTTTTTTTTTAGGACAAAATGTTTCAC	-			P-0028146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	36	350	0	ENST00000371953.3:c.802-23_820del		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
POLE	0	MSKCC	GRCh37	12	133252038	133252038	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	20	567	0	ENST00000320574.5:c.1172A>G	p.Lys391Arg	p.K391R	ENST00000320574	NM_006231.2	391	aAg/aGg																																																																														
IRS2	0	MSKCC	GRCh37	13	110436399	110436399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	45	535	0	ENST00000375856.3:c.2002G>A	p.Gly668Ser	p.G668S	ENST00000375856	NM_003749.2	668	Ggc/Agc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30068966	30068966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	73	658	0	ENST00000331968.5:c.1963G>C	p.Val655Leu	p.V655L	ENST00000331968	NM_002742.2	655	Gtg/Ctg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3823822	3823822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	85	471	0	ENST00000262367.5:c.2393A>G	p.Gln798Arg	p.Q798R	ENST00000262367	NM_004380.2	798	cAg/cGg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390107	89390107	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	129	354	1	ENST00000336596.2:c.856A>G	p.Lys286Glu	p.K286E	ENST00000336596	NM_005233.5	286	Aag/Gag																																																																														
SMO	0	MSKCC	GRCh37	7	128851599	128851599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	46	495	0	ENST00000249373.3:c.1924G>T	p.Val642Leu	p.V642L	ENST00000249373	NM_005631.4	642	Gtg/Ttg																																																																														
BTK	0	MSKCC	GRCh37	X	100608181	100608181	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0028146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	43	386	0	ENST00000308731.7:c.1908+1G>T		p.X636_splice	ENST00000308731	NM_000061.2	636																																																																															
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	272	529	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																																																														
NEGR1	0	MSKCC	GRCh37	1	72076752	72076752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	68	483	0	ENST00000357731.5:c.745G>T	p.Gly249Cys	p.G249C	ENST00000357731	NM_173808.2	249	Ggt/Tgt																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257152	19257152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	60	447	2	ENST00000162023.5:c.811C>A	p.Gln271Lys	p.Q271K	ENST00000162023		271	Cag/Aag																																																																														
MSH6	0	MSKCC	GRCh37	2	48028218	48028218	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	102	435	0	ENST00000234420.5:c.3096C>A	p.Cys1032Ter	p.C1032*	ENST00000234420	NM_000179.2	1032	tgC/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	13	395	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	13	582	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0028154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	17	380	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0028155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	176	493	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	455	544	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589599	67589604	+	inframe_deletion	In_Frame_Del	DEL	TCAGTT	TCAGTT	-			P-0028155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	39	341	0	ENST00000274335.5:c.1365_1370del	p.Phe456_Gln457del	p.F456_Q457del	ENST00000274335		454	acTCAGTTt/act																																																																														
AGO2	0	MSKCC	GRCh37	8	141549490	141549490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	76	390	0	ENST00000220592.5:c.2098C>A	p.Pro700Thr	p.P700T	ENST00000220592	NM_012154.3	700	Ccc/Acc																																																																														
TEK	0	MSKCC	GRCh37	9	27212839	27212839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	121	574	0	ENST00000380036.4:c.2821C>G	p.Leu941Val	p.L941V	ENST00000380036	NM_000459.3	941	Ctc/Gtc																																																																														
RNF43	0	MSKCC	GRCh37	17	56440887	56440899	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	CTGCTCAGCAGCA	CTGCTCAGCAGCA	ATTT			P-0028155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	172	594	0	ENST00000407977.2:c.438_450delinsAAAT	p.Ala147_Gln150delinsAsn	p.A147_Q150delinsN	ENST00000407977		146	gcTGCTGCTGAGCAG/gcAAAT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	71	489	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	72	287	0				ENST00000310581	NM_198253.2																																																																																
HLA-A	0	MSKCC	GRCh37	6	29910744	29910744	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	106	659	0	ENST00000376809.5:c.284C>G	p.Ser95Ter	p.S95*	ENST00000376809	NM_002116.7	95	tCa/tGa																																																																														
STAT3	0	MSKCC	GRCh37	17	40490803	40490803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	86	357	0	ENST00000264657.5:c.496G>C	p.Glu166Gln	p.E166Q	ENST00000264657	NM_139276.2	166	Gag/Cag																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910797	29910797	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	86	403	1	ENST00000376809.5:c.337G>T	p.Glu113Ter	p.E113*	ENST00000376809	NM_002116.7	113	Gag/Tag																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091193	29091193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	50	219	0	ENST00000328354.6:c.1297C>G	p.Gln433Glu	p.Q433E	ENST00000328354	NM_007194.3	433	Caa/Gaa																																																																														
RET	0	MSKCC	GRCh37	10	43617424	43617424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	65	367	0	ENST00000355710.3:c.2761G>A	p.Glu921Lys	p.E921K	ENST00000355710	NM_020975.4	921	Gaa/Aaa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420241	49420241	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	117	543	0	ENST00000301067.7:c.15508C>T	p.Gln5170Ter	p.Q5170*	ENST00000301067	NM_003482.3	5170	Cag/Tag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911663	32911663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	79	454	0	ENST00000380152.3:c.3171G>C	p.Lys1057Asn	p.K1057N	ENST00000380152		1057	aaG/aaC																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061087	38061087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	22	203	0	ENST00000250448.2:c.902C>T	p.Ser301Phe	p.S301F	ENST00000250448	NM_004496.3	301	tCt/tTt																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4117515	4117515	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	34	206	0	ENST00000262948.5:c.205G>C	p.Asp69His	p.D69H	ENST00000262948	NM_030662.3	69	Gac/Cac																																																																														
XPO1	0	MSKCC	GRCh37	2	61706029	61706029	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	103	506	0	ENST00000401558.2:c.3142G>C	p.Glu1048Gln	p.E1048Q	ENST00000401558	NM_003400.3	1048	Gag/Cag																																																																														
TP63	0	MSKCC	GRCh37	3	189586422	189586423	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	71	356	0	ENST00000264731.3:c.1046_1047delinsAT	p.Gly349Asp	p.G349D	ENST00000264731	NM_003722.4	349	gGA/gAT																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910598	29910598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	64	510	0	ENST00000376809.5:c.138C>G	p.Phe46Leu	p.F46L	ENST00000376809	NM_002116.7	46	ttC/ttG																																																																														
CARD11	0	MSKCC	GRCh37	7	2977655	2977655	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	96	498	0	ENST00000396946.4:c.1029G>C	p.Glu343Asp	p.E343D	ENST00000396946	NM_032415.4	343	gaG/gaC																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845871	151845871	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	110	569	0	ENST00000262189.6:c.13141G>T	p.Glu4381Ter	p.E4381*	ENST00000262189	NM_170606.2	4381	Gaa/Taa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879322	151879322	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	68	372	0	ENST00000262189.6:c.5623C>T	p.Gln1875Ter	p.Q1875*	ENST00000262189	NM_170606.2	1875	Cag/Tag																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	305	461	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0028157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	97	576	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112434	115112435	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	98	538	0	ENST00000257566.3:c.1305dup	p.Arg436ThrfsTer3	p.R436Tfs*3	ENST00000257566	NM_016569.3	435	-/A																																																																														
RECQL4	0	MSKCC	GRCh37	8	145742803	145742803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	52	367	0	ENST00000428558.2:c.208G>A	p.Glu70Lys	p.E70K	ENST00000428558	NM_004260.3	70	Gaa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056226	27056226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	123	581	0	ENST00000324856.7:c.1222C>T	p.Pro408Ser	p.P408S	ENST00000324856	NM_006015.4	408	Ccg/Tcg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056294	27056294	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0028157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	106	487	0	ENST00000324856.7:c.1290C>G	p.Tyr430Ter	p.Y430*	ENST00000324856	NM_006015.4	430	taC/taG																																																																														
TBX3	0	MSKCC	GRCh37	12	115118713	115118717	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGT	TGAGT	-			P-0028157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	99	493	0	ENST00000257566.3:c.624_628del	p.Lys208AsnfsTer17	p.K208Nfs*17	ENST00000257566	NM_016569.3	208	aaACTCAcc/aacc																																																																														
CDH1	0	MSKCC	GRCh37	16	68847232	68847233	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	88	470	0	ENST00000261769.5:c.1155dup	p.Glu386Ter	p.E386*	ENST00000261769	NM_004360.3	385	cct/ccTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151851097	151851097	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0028157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	61	215	0	ENST00000262189.6:c.12274G>A	p.Glu4092Lys	p.E4092K	ENST00000262189	NM_170606.2	4092	Gag/Aag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0028160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	42	296	3	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																														
NF1	0	MSKCC	GRCh37	17	29527462	29527462	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76015786		P-0028160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	20	448	0	ENST00000358273.4:c.911G>A	p.Arg304Gln	p.R304Q	ENST00000358273	NM_001042492.2	304	cGa/cAa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118380683	118380683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	21	453	1	ENST00000534358.1:c.10921G>A	p.Glu3641Lys	p.E3641K	ENST00000534358	NM_005933.3	3641	Gag/Aag																																																																														
DICER1	0	MSKCC	GRCh37	14	95574369	95574369	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	18	292	0	ENST00000343455.3:c.2498A>T	p.Lys833Met	p.K833M	ENST00000343455	NM_177438.2	833	aAg/aTg																																																																														
TOP1	0	MSKCC	GRCh37	20	39729866	39729866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	53	433	0	ENST00000361337.2:c.1181C>T	p.Ser394Phe	p.S394F	ENST00000361337	NM_003286.2	394	tCt/tTt																																																																														
NTRK2	0	MSKCC	GRCh37	9	87366947	87366961	+	inframe_deletion	In_Frame_Del	DEL	TGGTAATGCTGTTTC	TGGTAATGCTGTTTC	-			P-0028160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	48	572	0	ENST00000277120.3:c.1345_1359del	p.Val449_Leu453del	p.V449_L453del	ENST00000277120		448	tTGGTAATGCTGTTTCtg/ttg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0028162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	305	554	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	182	525	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
MST1R	0	MSKCC	GRCh37	3	49928906	49928906	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	90	808	0	ENST00000296474.3:c.3460G>C	p.Glu1154Gln	p.E1154Q	ENST00000296474	NM_002447.2	1154	Gag/Cag																																																																														
E2F3	0	MSKCC	GRCh37	6	20402665	20402665	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	37	368	0	ENST00000346618.3:c.202del	p.Thr68ProfsTer12	p.T68Pfs*12	ENST00000346618	NM_001949.4	68	Acc/cc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740766	145740766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	122	682	0	ENST00000428558.2:c.1334G>C	p.Ser445Thr	p.S445T	ENST00000428558	NM_004260.3	445	aGc/aCc																																																																														
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	170	288	0	ENST00000374080.3:c.3670C>G	p.Leu1224Val	p.L1224V	ENST00000374080		1224	Ctc/Gtc																																																																														
SETD2	0	MSKCC	GRCh37	3	47165917	47165917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	32	352	0	ENST00000409792.3:c.209G>A	p.Arg70Gln	p.R70Q	ENST00000409792	NM_014159.6	70	cGa/cAa																																																																														
RNF43	0	MSKCC	GRCh37	17	56492696	56492697	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0028163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	78	326	0	ENST00000407977.2:c.242_243del	p.Lys81IlefsTer14	p.K81Ifs*14	ENST00000407977		81	aAA/a																																																																														
PRDM14	0	MSKCC	GRCh37	8	70980577	70980577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	236	502	0	ENST00000276594.2:c.800G>C	p.Gly267Ala	p.G267A	ENST00000276594	NM_024504.3	267	gGt/gCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	101	353	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0028164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	260	591	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023141	27023196	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGGCGGCGGAGCCGGCAGCGGCGGCGGGCCCGGCGCGGAGCCGGACCTGAA	GGCGGCGGCGGCGGAGCCGGCAGCGGCGGCGGGCCCGGCGCGGAGCCGGACCTGAA	-			P-0028164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	90	56	0	ENST00000324856.7:c.248_303del	p.Gly83GlufsTer9	p.G83Efs*9	ENST00000324856	NM_006015.4	83	GGCGGCGGCGGCGGAGCCGGCAGCGGCGGCGGGCCCGGCGCGGAGCCGGACCTGAAg/g																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434580	49434580	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	162	523	0	ENST00000301067.7:c.6973del	p.Asp2325MetfsTer7	p.D2325Mfs*7	ENST00000301067	NM_003482.3	2325	Gat/at																																																																														
BRCA2	0	MSKCC	GRCh37	13	32954180	32954180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	177	405	0	ENST00000380152.3:c.9154C>T	p.Arg3052Trp	p.R3052W	ENST00000380152		3052	Cgg/Tgg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252854	36252854	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	75	241	0	ENST00000300305.3:c.508G>C	p.Gly170Arg	p.G170R	ENST00000300305		170	Ggg/Cgg																																																																														
TERT	0	MSKCC	GRCh37	5	1278850	1278850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	197	502	0	ENST00000310581.5:c.2192G>A	p.Ser731Asn	p.S731N	ENST00000310581	NM_198253.2	731	aGc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0028165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	236	600	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713333	30713333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	59	367	0	ENST00000359013.4:c.733C>A	p.Leu245Met	p.L245M	ENST00000359013	NM_001024847.2	245	Ctg/Atg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120231	94120231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	98	216	0	ENST00000369303.4:c.820G>C	p.Asp274His	p.D274H	ENST00000369303	NM_004440.3	274	Gac/Cac																																																																														
JAK1	0	MSKCC	GRCh37	1	65301837	65301838	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0028167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	59	281	1	ENST00000342505.4:c.3201_3202del	p.Phe1067LeufsTer6	p.F1067Lfs*6	ENST00000342505	NM_002227.2	1067	ttTGga/ttga																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870903	12871117	+	frameshift_variant	Frame_Shift_Del	DEL	GACTTGGAGAAGCACTGCAGAGACATGGAAGAGGCGAGCCAGCGCAAGTGGAATTTCGATTTTCAGAATCACAAACCCCTAGAGGGCAAGTACGAGTGGCAAGAGGTGGAGAAGGGCAGCTTGCCCGAGTTCTACTACAGACCCCCGCGGCCCCCCAAAGGTGCCTGCAAGGTGCCGGCGCAGGAGAGCCAGGATGTCAGCGGGAGCCGCCCGGC	GACTTGGAGAAGCACTGCAGAGACATGGAAGAGGCGAGCCAGCGCAAGTGGAATTTCGATTTTCAGAATCACAAACCCCTAGAGGGCAAGTACGAGTGGCAAGAGGTGGAGAAGGGCAGCTTGCCCGAGTTCTACTACAGACCCCCGCGGCCCCCCAAAGGTGCCTGCAAGGTGCCGGCGCAGGAGAGCCAGGATGTCAGCGGGAGCCGCCCGGC	-			P-0028167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	68	239	0	ENST00000228872.4:c.131_345del	p.Asp44GlyfsTer9	p.D44Gfs*9	ENST00000228872	NM_004064.3	44	GACTTGGAGAAGCACTGCAGAGACATGGAAGAGGCGAGCCAGCGCAAGTGGAATTTCGATTTTCAGAATCACAAACCCCTAGAGGGCAAGTACGAGTGGCAAGAGGTGGAGAAGGGCAGCTTGCCCGAGTTCTACTACAGACCCCCGCGGCCCCCCAAAGGTGCCTGCAAGGTGCCGGCGCAGGAGAGCCAGGATGTCAGCGGGAGCCGCCCGGCg/g																																																																														
TP53	0	MSKCC	GRCh37	17	7577561	7577561	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	95	432	0	ENST00000269305.4:c.720T>A	p.Ser240Arg	p.S240R	ENST00000269305	NM_001126112.2	240	agT/agA																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67592115	67592116	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CACTTTTCTTGTCCGGGAGAGCAGTAAACAGGGCTGCTATGCCTGCTCTGTAGTGTGA			P-0028167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	46	245	0	ENST00000274335.5:c.1985+2_1985+3insGACACTTTTCTTGTCCGGGAGAGCAGTAAACAGGGCTGCTATGCCTGCTCTGTAGTGT		p.G644GTFLVRESSKQGCYACSVV*X	ENST00000274335		644	ggc/ggCACTTTTCTTGTCCGGGAGAGCAGTAAACAGGGCTGCTATGCCTGCTCTGTAGTGTGAc																																																																														
TP53	0	MSKCC	GRCh37	17	7576890	7576890	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	627	598	0	ENST00000269305.4:c.956delA	p.Lys319ArgfsTer26	p.K319Rfs*26	ENST00000269305	NM_001126112.2	319	aAg/ag																																																																														
RB1	0	MSKCC	GRCh37	13	49047489	49047505	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGACAGAATCTTAGTA	TTGACAGAATCTTAGTA	-			P-0028171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	170	272	0	ENST00000267163.4:c.2490-6_2500del		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
FANCA	0	MSKCC	GRCh37	16	89865607	89865607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	292	477	0	ENST00000389301.3:c.860A>G	p.Glu287Gly	p.E287G	ENST00000389301	NM_000135.2	287	gAg/gGg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45871916	45871916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	316	625	0	ENST00000391945.4:c.332C>T	p.Ser111Phe	p.S111F	ENST00000391945	NM_000400.3	111	tCc/tTc																																																																														
MSH6	0	MSKCC	GRCh37	2	48026066	48026066	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	204	414	0	ENST00000234420.5:c.944C>G	p.Ser315Cys	p.S315C	ENST00000234420	NM_000179.2	315	tCt/tGt																																																																														
PPARG	0	MSKCC	GRCh37	3	12393170	12393170	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	444	471	0	ENST00000287820.6:c.79C>T	p.Gln27Ter	p.Q27*	ENST00000287820	NM_015869.4	27	Caa/Taa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643764	52643764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	237	607	0	ENST00000394830.3:c.2132G>A	p.Ser711Asn	p.S711N	ENST00000394830	NM_018313.4	711	aGt/aAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187629397	187629397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	323	581	0	ENST00000441802.2:c.1585C>A	p.Leu529Met	p.L529M	ENST00000441802	NM_005245.3	529	Ctg/Atg																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	135	338	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																														
ARID2	0	MSKCC	GRCh37	12	46298716	46298716	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0028173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	92	238	0	ENST00000334344.6:c.5364-1G>T		p.X1788_splice	ENST00000334344	NM_152641.2	1788																																																																															
STK11	0	MSKCC	GRCh37	19	1220641	1220642	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	232	596	0	ENST00000326873.7:c.659_660del	p.Gln220ProfsTer45	p.Q220Pfs*45	ENST00000326873	NM_000455.4	220	cAG/c																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602815	10602824	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTGACCCA	ACTTGACCCA	-			P-0028173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	249	622	0	ENST00000171111.5:c.754_763del	p.Trp252ThrfsTer22	p.W252Tfs*22	ENST00000171111	NM_203500.1	252	TGGGTCAAGTac/ac																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52714594	52714594	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	322	464	0	ENST00000322088.6:c.352G>T	p.Glu118Ter	p.E118*	ENST00000322088	NM_014225.5	118	Gag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112174583	112174584	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0028174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	179	424	0	ENST00000257430.4:c.3295_3296delGT	p.Val1099PhefsTer19	p.V1099Ffs*19	ENST00000257430	NM_000038.5	1098	TGt/t																																																																														
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0028174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	460	534	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
FLT4	0	MSKCC	GRCh37	5	180041121	180041121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	753	868	0	ENST00000261937.6:c.3278C>T	p.Thr1093Met	p.T1093M	ENST00000261937	NM_182925.4	1093	aCg/aTg																																																																														
STAG2	0	MSKCC	GRCh37	X	123182881	123182881	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0028174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	154	188	0	ENST00000218089.9:c.846A>C	p.Glu282Asp	p.E282D	ENST00000218089	NM_001042749.1	282	gaA/gaC																																																																														
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0028175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			725	395	487	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458746	120458746	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			690	37	428	0	ENST00000256646.2:c.6599C>G	p.Ser2200Cys	p.S2200C	ENST00000256646	NM_024408.3	2200	tCt/tGt																																																																														
HLA-B	0	MSKCC	GRCh37	6	31322430	31322430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	42	343	0	ENST00000412585.2:c.1025G>A	p.Gly342Glu	p.G342E	ENST00000412585	NM_005514.6	342	gGg/gAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446160	49446160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			708	378	549	0	ENST00000301067.7:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000301067	NM_003482.3	436	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578416	7578419	+	frameshift_variant	Frame_Shift_Del	DEL	CCTC	CCTC	-			P-0028175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	252	546	0	ENST00000269305.4:c.511_514delGAGG	p.Glu171LeufsTer2	p.E171Lfs*2	ENST00000269305	NM_001126112.2	171	GAGGtt/tt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15965527	15965527	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	20	231	0	ENST00000268712.3:c.5279C>A	p.Ser1760Ter	p.S1760*	ENST00000268712	NM_006311.3	1760	tCa/tAa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15965581	15965581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	13	144	0	ENST00000268712.3:c.5225C>T	p.Ser1742Leu	p.S1742L	ENST00000268712	NM_006311.3	1742	tCa/tTa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5238950	5238950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	32	343	0	ENST00000357368.4:c.1829G>T	p.Arg610Leu	p.R610L	ENST00000357368	NM_002850.3	610	cGg/cTg																																																																														
VEGFA	0	MSKCC	GRCh37	6	43745379	43745379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			746	62	510	0	ENST00000523873.1:c.292G>A	p.Glu98Lys	p.E98K	ENST00000523873		98	Gag/Aag																																																																														
EPHA7	0	MSKCC	GRCh37	6	93953260	93953260	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0028175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	55	368	0	ENST00000369303.4:c.2883-2A>T		p.X961_splice	ENST00000369303	NM_004440.3	961																																																																															
ATRX	0	MSKCC	GRCh37	X	76776376	76776376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	40	349	0	ENST00000373344.5:c.7090C>G	p.Leu2364Val	p.L2364V	ENST00000373344	NM_000489.3	2364	Ctc/Gtc																																																																														
ATRX	0	MSKCC	GRCh37	X	76938647	76938647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			705	76	481	0	ENST00000373344.5:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000373344	NM_000489.3	701	Cgt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0028177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	93	453	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	46	619	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	69	341	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																														
MED12	0	MSKCC	GRCh37	X	70344869	70344869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	95	362	0	ENST00000374080.3:c.2099C>T	p.Ser700Phe	p.S700F	ENST00000374080		700	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	95	623	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
MED12	0	MSKCC	GRCh37	X	70344973	70344973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	92	369	0	ENST00000374080.3:c.2203G>A	p.Ala735Thr	p.A735T	ENST00000374080		735	Gcc/Acc																																																																														
NF1	0	MSKCC	GRCh37	17	29490319	29490319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	27	506	0	ENST00000358273.4:c.404G>T	p.Arg135Leu	p.R135L	ENST00000358273	NM_001042492.2	135	cGg/cTg																																																																														
CIC	0	MSKCC	GRCh37	19	42792100	42792100	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	67	601	0	ENST00000575354.2:c.904G>T	p.Glu302Ter	p.E302*	ENST00000575354	NM_015125.3	302	Gag/Tag																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165725	118165725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	52	416	0	ENST00000369448.3:c.235G>T	p.Val79Phe	p.V79F	ENST00000369448	NM_017709.3	79	Gtt/Ttt																																																																														
DDR2	0	MSKCC	GRCh37	1	162731044	162731044	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	80	546	0	ENST00000367921.3:c.899A>T	p.Lys300Met	p.K300M	ENST00000367921	NM_006182.2	300	aAg/aTg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94212844	94212844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			322	52	508	0	ENST00000323929.3:c.398C>T	p.Thr133Ile	p.T133I	ENST00000323929	NM_005591.3	133	aCa/aTa																																																																														
KDM5A	0	MSKCC	GRCh37	12	475121	475121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	37	618	2	ENST00000399788.2:c.516C>A	p.Phe172Leu	p.F172L	ENST00000399788	NM_001042603.1	172	ttC/ttA																																																																														
KMT2D	0	MSKCC	GRCh37	12	49439883	49439883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	91	743	0	ENST00000301067.7:c.4658G>A	p.Cys1553Tyr	p.C1553Y	ENST00000301067	NM_003482.3	1553	tGt/tAt																																																																														
CYLD	0	MSKCC	GRCh37	16	50783959	50783959	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	96	747	0	ENST00000398568.2:c.350A>G	p.Asn117Ser	p.N117S	ENST00000398568	NM_001042412.1	117	aAc/aGc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89345511	89345511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	51	424	0	ENST00000301030.4:c.7439G>C	p.Gly2480Ala	p.G2480A	ENST00000301030	NM_001256183.1	2480	gGc/gCc																																																																														
FLT4	0	MSKCC	GRCh37	5	180057685	180057685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	130	781	0	ENST00000261937.6:c.270G>T	p.Arg90Ser	p.R90S	ENST00000261937	NM_182925.4	90	agG/agT																																																																														
SESN1	0	MSKCC	GRCh37	6	109319831	109319831	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	45	591	0	ENST00000436639.2:c.857G>C	p.Cys286Ser	p.C286S	ENST00000436639	NM_014454.2	286	tGt/tCt																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981846	70981846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	47	795	1	ENST00000276594.2:c.250C>A	p.Leu84Ile	p.L84I	ENST00000276594	NM_024504.3	84	Cta/Ata																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139408961	139408961	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0026574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	27	623	0	ENST00000277541.6:c.2207+1G>T		p.X736_splice	ENST00000277541	NM_017617.3	736																																																																															
ARID1B	0	MSKCC	GRCh37	6	157099341	157099341	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	14	314	0	ENST00000346085.5:c.278A>T	p.His93Leu	p.H93L	ENST00000346085	NM_020732.3	93	cAc/cTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528697	8528697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	20	328	0	ENST00000356435.5:c.435G>A	p.Met145Ile	p.M145I	ENST00000356435		145	atG/atA																																																																														
KIT	0	MSKCC	GRCh37	4	55593603	55593620	+	protein_altering_variant	In_Frame_Del	DEL	TGGAAGGTTGTTGAGGAG	TGGAAGGTTGTTGAGGAG	AGGGAA			P-0027918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	108	437	2	ENST00000288135.5:c.1669_1686delinsAGGGAA	p.Trp557_Glu561delinsArg	p.W557_E561delinsR	ENST00000288135	NM_000222.2	557	TGGAAGGTTGTTGAGGAG/AGGGAA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	23	433	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	92	448	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0027921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	69	315	1	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	132	624	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC																																																																														
AMER1	0	MSKCC	GRCh37	X	63410807	63410807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	185	520	0	ENST00000330258.3:c.2360C>A	p.Ser787Tyr	p.S787Y	ENST00000330258	NM_152424.3	787	tCc/tAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47103717	47103717	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	292	446	1	ENST00000409792.3:c.6229C>T	p.Arg2077Ter	p.R2077*	ENST00000409792	NM_014159.6	2077	Cga/Tga																																																																														
KIT	0	MSKCC	GRCh37	4	55593589	55593608	+	protein_altering_variant	In_Frame_Del	DEL	TGTATGAAGTACAGTGGAAG	TGTATGAAGTACAGTGGAAG	GA			P-0027928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	192	450	1	ENST00000288135.5:c.1655_1674delinsGA	p.Met552_Lys558delinsArg	p.M552_K558delinsR	ENST00000288135	NM_000222.2	552	aTGTATGAAGTACAGTGGAAG/aGA																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	158	318	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	252	435	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651955	36651955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	140	499	0	ENST00000244741.5:c.77A>G	p.Asp26Gly	p.D26G	ENST00000244741	NM_000389.4	26	gAc/gGc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	62	357	0	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	56	271	0	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	195	442	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	114	287	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	140	289	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	359	789	2	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																														
RARA	0	MSKCC	GRCh37	17	38512383	38512383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	156	477	1	ENST00000254066.5:c.1294C>T	p.Arg432Trp	p.R432W	ENST00000254066	NM_000964.3	432	Cgg/Tgg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481671	56481671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	300	642	0	ENST00000267101.3:c.706T>C	p.Ser236Pro	p.S236P	ENST00000267101	NM_001982.3	236	Tca/Cca																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	228	438	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
POLE	0	MSKCC	GRCh37	12	133242014	133242014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	228	564	4	ENST00000320574.5:c.2342C>T	p.Ala781Val	p.A781V	ENST00000320574	NM_006231.2	781	gCg/gTg																																																																														
AR	0	MSKCC	GRCh37	X	66765242	66765243	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	130	176	0	ENST00000374690.3:c.271_273dup	p.Gln91dup	p.Q91dup	ENST00000374690	NM_000044.3	91	agg/agGCAg																																																																														
FH	0	MSKCC	GRCh37	1	241680489	241680489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200007371		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	152	333	3	ENST00000366560.3:c.260G>A	p.Arg87His	p.R87H	ENST00000366560	NM_000143.3	87	cGc/cAc																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	19	639	0	ENST00000307102.5:c.371C>T	p.Pro124Leu	p.P124L	ENST00000307102	NM_002755.3	124	cCg/cTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187630905	187630905	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75367100		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	214	429	2	ENST00000441802.2:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000441802	NM_005245.3	26	cGa/cAa																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	122	507	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	70	713	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
RAD51B	0	MSKCC	GRCh37	14	68352609	68352609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	133	390	0	ENST00000487270.1:c.476G>A	p.Arg159His	p.R159H	ENST00000487270	NM_133509.3	159	cGt/cAt																																																																														
ALK	0	MSKCC	GRCh37	2	29456453	29456453	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	172	651	0	ENST00000389048.3:c.2465del	p.Gly822ValfsTer9	p.G822Vfs*9	ENST00000389048	NM_004304.4	822	gGt/gt																																																																														
TET2	0	MSKCC	GRCh37	4	106197505	106197506	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	147	332	0	ENST00000380013.4:c.5844dup	p.Val1949SerfsTer7	p.V1949Sfs*7	ENST00000380013	NM_001127208.2	1946	-/A																																																																														
BCOR	54880	MSKCC	GRCh37	X	39934126	39934127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	239	270	1	ENST00000378444.4:c.472dup	p.Ser158LysfsTer28	p.S158Kfs*28	ENST00000378444	NM_001123385.1	158	agt/aAgt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	55	624	3	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138417868	138417868	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	278	513	0	ENST00000289153.2:c.1651T>C	p.Cys551Arg	p.C551R	ENST00000289153	NM_006219.2	551	Tgt/Cgt																																																																														
KRAS	0	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	250	462	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																														
RAD50	0	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	193	329	2	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																														
RPTOR	0	MSKCC	GRCh37	17	78923339	78923339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	208	451	0	ENST00000306801.3:c.3362C>T	p.Thr1121Met	p.T1121M	ENST00000306801	NM_020761.2	1121	aCg/aTg																																																																														
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	336	754	6	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	267	413	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023267	27023267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	195	274	0	ENST00000324856.7:c.373G>A	p.Gly125Ser	p.G125S	ENST00000324856	NM_006015.4	125	Ggt/Agt																																																																														
POLD1	0	MSKCC	GRCh37	19	50918759	50918759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	351	654	1	ENST00000440232.2:c.2629G>A	p.Asp877Asn	p.D877N	ENST00000440232	NM_002691.3	877	Gat/Aat																																																																														
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	157	234	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																														
HRAS	0	MSKCC	GRCh37	11	533535	533535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	121	640	2	ENST00000311189.7:c.368G>A	p.Arg123His	p.R123H	ENST00000311189		123	cGc/cAc																																																																														
DIS3	0	MSKCC	GRCh37	13	73352417	73352418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	137	457	0	ENST00000377767.4:c.487dup	p.Met163AsnfsTer15	p.M163Nfs*15	ENST00000377767	NM_014953.3	163	atg/aAtg																																																																														
POLD1	0	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	194	509	2	ENST00000440232.2:c.342delG	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																														
PARP1	0	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	157	439	1	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	268	779	4	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508535	106508535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	73	211	0	ENST00000359195.3:c.529C>T	p.Arg177Cys	p.R177C	ENST00000359195	NM_002649.2	177	Cgc/Tgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187542110	187542110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	179	374	0	ENST00000441802.2:c.5630del	p.Pro1877LeufsTer20	p.P1877Lfs*20	ENST00000441802	NM_005245.3	1877	cCt/ct																																																																														
IGF2	0	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	36	584	2	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																														
FGFR1	0	MSKCC	GRCh37	8	38287386	38287386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	245	491	0	ENST00000425967.3:c.271C>T	p.Arg91Trp	p.R91W	ENST00000425967	NM_001174067.1	91	Cgg/Tgg																																																																														
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	228	313	2	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	109	357	3	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																														
FLT3	0	MSKCC	GRCh37	13	28644740	28644741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	129	275	0	ENST00000241453.7:c.52dup	p.Ser18PhefsTer24	p.S18Ffs*24	ENST00000241453	NM_004119.2	18	tct/tTct																																																																														
ALK	0	MSKCC	GRCh37	2	29443612	29443612	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	301	674	3	ENST00000389048.3:c.3605delG	p.Gly1202GlufsTer56	p.G1202Efs*56	ENST00000389048	NM_004304.4	1202	gGa/ga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	320	622	0	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																														
PIM1	0	MSKCC	GRCh37	6	37138563	37138563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	224	551	1	ENST00000373509.5:c.97C>T	p.Pro33Ser	p.P33S	ENST00000373509	NM_002648.3	33	Ccc/Tcc																																																																														
PMS1	0	MSKCC	GRCh37	2	190728564	190728565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	295	630	0	ENST00000441310.2:c.1958dup	p.Ile654AspfsTer21	p.I654Dfs*21	ENST00000441310	NM_000534.4	651	aga/agAa																																																																														
POLE	0	MSKCC	GRCh37	12	133237640	133237640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	53	581	0	ENST00000320574.5:c.2975C>T	p.Ala992Val	p.A992V	ENST00000320574	NM_006231.2	992	gCc/gTc																																																																														
SPEN	0	MSKCC	GRCh37	1	16259729	16259729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	235	559	0	ENST00000375759.3:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000375759	NM_015001.2	2332	Cgc/Tgc																																																																														
TSC2	0	MSKCC	GRCh37	16	2121535	2121535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	82	658	1	ENST00000219476.3:c.1864C>T	p.Arg622Trp	p.R622W	ENST00000219476	NM_000548.3	622	Cgg/Tgg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351871	89351871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	76	760	1	ENST00000301030.4:c.1079C>T	p.Pro360Leu	p.P360L	ENST00000301030	NM_001256183.1	360	cCg/cTg																																																																														
AXL	0	MSKCC	GRCh37	19	41758303	41758303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	274	601	1	ENST00000301178.4:c.1759G>A	p.Val587Ile	p.V587I	ENST00000301178	NM_021913.4	587	Gtc/Atc																																																																														
JAK1	0	MSKCC	GRCh37	1	65344748	65344748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	167	364	1	ENST00000342505.4:c.289G>A	p.Val97Ile	p.V97I	ENST00000342505	NM_002227.2	97	Gtt/Att																																																																														
FGF3	0	MSKCC	GRCh37	11	69625348	69625348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	228	616	1	ENST00000334134.2:c.445G>A	p.Ala149Thr	p.A149T	ENST00000334134	NM_005247.2	149	Gcc/Acc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89457251	89457252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	45	427	0	ENST00000336596.2:c.1738dup	p.Arg580LysfsTer19	p.R580Kfs*19	ENST00000336596	NM_005233.5	578	gaa/gAaa																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856400	111856400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	27	260	0	ENST00000341259.2:c.451G>A	p.Ala151Thr	p.A151T	ENST00000341259	NM_005475.2	151	Gcc/Acc																																																																														
YES1	0	MSKCC	GRCh37	18	745962	745963	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	59	526	0	ENST00000314574.4:c.559_560delAG	p.Ser187Ter	p.S187*	ENST00000314574	NM_005433.3	187	AGt/t																																																																														
MEN1	0	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	220	575	5	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																														
SYK	0	MSKCC	GRCh37	9	93629423	93629423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	32	320	0	ENST00000375746.1:c.857C>T	p.Ala286Val	p.A286V	ENST00000375746	NM_001174167.1	286	gCg/gTg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53224141	53224141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	200	388	0	ENST00000375401.3:c.3410C>T	p.Ala1137Val	p.A1137V	ENST00000375401	NM_004187.3	1137	gCg/gTg																																																																														
TET1	0	MSKCC	GRCh37	10	70332152	70332153	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	82	248	3	ENST00000373644.4:c.65dup	p.Lys23GlufsTer37	p.K23Efs*37	ENST00000373644	NM_030625.2	19	-/A																																																																														
APC	0	MSKCC	GRCh37	5	112116536	112116536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200740020		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	42	456	0	ENST00000257430.4:c.581G>A	p.Arg194Lys	p.R194K	ENST00000257430	NM_000038.5	194	aGg/aAg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138461563	138461563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	190	455	0	ENST00000289153.2:c.458G>A	p.Arg153His	p.R153H	ENST00000289153	NM_006219.2	153	cGc/cAc																																																																														
NF1	0	MSKCC	GRCh37	17	29580009	29580010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	35	407	0	ENST00000358273.4:c.4170dup	p.Ser1391IlefsTer4	p.S1391Ifs*4	ENST00000358273	NM_001042492.2	1388	-/A																																																																														
DAXX	0	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	161	323	0	ENST00000374542.5:c.767G>A	p.Arg256His	p.R256H	ENST00000374542	NM_001141970.1	256	cGc/cAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	411	848	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	308	634	14	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458436	120458436	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	118	459	0	ENST00000256646.2:c.6909delC	p.Ile2304LeufsTer2	p.I2304Lfs*2	ENST00000256646	NM_024408.3	2303	ccC/cc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	333	687	2	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740438	58740439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	216	499	0	ENST00000305921.3:c.1349dupT	p.Leu450PhefsTer6	p.L450Ffs*6	ENST00000305921	NM_003620.3	448	aat/aaTt																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982134	93982134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	108	291	0	ENST00000369303.4:c.1331C>T	p.Ser444Leu	p.S444L	ENST00000369303	NM_004440.3	444	tCg/tTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485311	8485311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	238	415	0	ENST00000356435.5:c.3069T>A	p.Asn1023Lys	p.N1023K	ENST00000356435		1023	aaT/aaA																																																																														
PAX5	0	MSKCC	GRCh37	9	36966665	36966665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	219	440	1	ENST00000358127.4:c.661C>T	p.Arg221Trp	p.R221W	ENST00000358127	NM_001280556.1	221	Cgg/Tgg																																																																														
GNAS	0	MSKCC	GRCh37	20	57485766	57485766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	154	322	0	ENST00000371085.3:c.1067G>A	p.Arg356His	p.R356H	ENST00000371085	NM_000516.4	356	cGt/cAt																																																																														
FAM175A	0	MSKCC	GRCh37	4	84384048	84384048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	253	477	1	ENST00000321945.7:c.804G>T	p.Lys268Asn	p.K268N	ENST00000321945	NM_139076.2	268	aaG/aaT																																																																														
UPF1	0	MSKCC	GRCh37	19	18976922	18976922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	270	548	0	ENST00000262803.5:c.3307G>A	p.Gly1103Arg	p.G1103R	ENST00000262803	NM_002911.3	1103	Gga/Aga																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120480570	120480571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	44	449	0	ENST00000256646.2:c.3246dupA	p.Ala1083SerfsTer17	p.A1083Sfs*17	ENST00000256646	NM_024408.3	1082	-/A																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31388675	31388675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	195	544	0	ENST00000328111.2:c.1940G>A	p.Gly647Asp	p.G647D	ENST00000328111	NM_006892.3	647	gGc/gAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400029	139400029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	64	648	0	ENST00000277541.6:c.4319T>C	p.Ile1440Thr	p.I1440T	ENST00000277541	NM_017617.3	1440	aTc/aCc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350059	89350059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	237	563	0	ENST00000301030.4:c.2891G>A	p.Gly964Asp	p.G964D	ENST00000301030	NM_001256183.1	964	gGc/gAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212055	5212055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	185	555	0	ENST00000357368.4:c.4976G>A	p.Arg1659His	p.R1659H	ENST00000357368	NM_002850.3	1659	cGc/cAc																																																																														
HLA-A	0	MSKCC	GRCh37	6	29912173	29912173	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	98	193	0	ENST00000376809.5:c.894G>A	p.Trp298Ter	p.W298*	ENST00000376809	NM_002116.7	298	tgG/tgA																																																																														
ERCC5	0	MSKCC	GRCh37	13	103506141	103506141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	46	383	0	ENST00000355739.4:c.299G>A	p.Ser100Asn	p.S100N	ENST00000355739	NM_000123.3	100	aGt/aAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	113	410	0	ENST00000324856.7:c.5547_5548dupGG	p.Asp1850GlyfsTer34	p.D1850Gfs*34	ENST00000324856	NM_006015.4	1847	-/GG																																																																														
FANCC	0	MSKCC	GRCh37	9	97888841	97888841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	51	578	1	ENST00000289081.3:c.866C>T	p.Ala289Val	p.A289V	ENST00000289081	NM_000136.2	289	gCc/gTc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11924223	11924225	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	12	27	0	ENST00000353533.5:c.31_33del	p.Gly11del	p.G11del	ENST00000353533	NM_003010.3	7	aGCGgc/agc																																																																														
JAK1	0	MSKCC	GRCh37	1	65339110	65339111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	247	449	1	ENST00000342505.4:c.425dupA	p.Ile143AspfsTer9	p.I143Dfs*9	ENST00000342505	NM_002227.2	142	aag/aaAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	233	819	0	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																														
ATRX	0	MSKCC	GRCh37	X	76938655	76938655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	180	280	0	ENST00000373344.5:c.2093A>G	p.Lys698Arg	p.K698R	ENST00000373344	NM_000489.3	698	aAg/aGg																																																																														
CDK8	1024	MSKCC	GRCh37	13	26967567	26967567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	229	516	0	ENST00000381527.3:c.710G>A	p.Arg237Gln	p.R237Q	ENST00000381527	NM_001260.1	237	cGa/cAa																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31384997	31384997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	51	428	0	ENST00000328111.2:c.1382G>A	p.Arg461His	p.R461H	ENST00000328111	NM_006892.3	461	cGc/cAc																																																																														
FLT4	0	MSKCC	GRCh37	5	180048667	180048667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	260	571	1	ENST00000261937.6:c.1895G>A	p.Arg632His	p.R632H	ENST00000261937	NM_182925.4	632	cGc/cAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413945	139413945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	337	710	0	ENST00000277541.6:c.815G>A	p.Cys272Tyr	p.C272Y	ENST00000277541	NM_017617.3	272	tGt/tAt																																																																														
MGA	0	MSKCC	GRCh37	15	42054402	42054403	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	151	363	0	ENST00000219905.7:c.7592dupA	p.Lys2532GlufsTer6	p.K2532Efs*6	ENST00000219905	NM_001164273.1	2529	aga/agAa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874012	151874013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	206	429	0	ENST00000262189.6:c.8525dup	p.Asn2842LysfsTer2	p.N2842Kfs*2	ENST00000262189	NM_170606.2	2842	aat/aaAt																																																																														
TBX3	0	MSKCC	GRCh37	12	115118754	115118754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	108	497	0	ENST00000257566.3:c.587A>G	p.Gln196Arg	p.Q196R	ENST00000257566	NM_016569.3	196	cAg/cGg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	212	696	4	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937983	36937983	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	216	719	0	ENST00000361632.4:c.853del	p.Leu285SerfsTer43	p.L285Sfs*43	ENST00000361632		285	Ctc/tc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591092	67591092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	64	336	0	ENST00000274335.5:c.1685G>A	p.Arg562His	p.R562H	ENST00000274335		562	cGt/cAt																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46521524	46521525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	69	532	1	ENST00000262741.5:c.883dupA	p.Met295AsnfsTer3	p.M295Nfs*3	ENST00000262741	NM_003629.3	295	atg/aAtg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104356980	104356981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1477199832		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	260	530	0	ENST00000369902.3:c.846dup	p.Glu283ArgfsTer3	p.E283Rfs*3	ENST00000369902	NM_016169.3	280	-/C																																																																														
SMO	0	MSKCC	GRCh37	7	128845102	128845102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	336	603	0	ENST00000249373.3:c.596G>A	p.Arg199Gln	p.R199Q	ENST00000249373	NM_005631.4	199	cGg/cAg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500885	8500885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	17	491	0	ENST00000356435.5:c.1997C>A	p.Pro666His	p.P666H	ENST00000356435		666	cCt/cAt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32929161	32929162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	267	555	0	ENST00000380152.3:c.7177dup	p.Met2393AsnfsTer19	p.M2393Nfs*19	ENST00000380152		2391	gaa/gAaa																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191536	185191536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	54	500	0	ENST00000265026.3:c.2417G>T	p.Arg806Met	p.R806M	ENST00000265026	NM_004721.4	806	aGg/aTg																																																																														
IKBKE	0	MSKCC	GRCh37	1	206647680	206647680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	177	410	0	ENST00000367120.3:c.94G>A	p.Gly32Arg	p.G32R	ENST00000367120	NM_014002.3	32	Gga/Aga																																																																														
SETD8	0	MSKCC	GRCh37	12	123879807	123879807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	167	542	0	ENST00000330479.4:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000330479	NM_020382.3	168	cGa/cAa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89357465	89357465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	158	575	0	ENST00000301030.4:c.353C>T	p.Ala118Val	p.A118V	ENST00000301030	NM_001256183.1	118	gCc/gTc																																																																														
TSC2	0	MSKCC	GRCh37	16	2100464	2100464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	75	557	1	ENST00000219476.3:c.202G>A	p.Ala68Thr	p.A68T	ENST00000219476	NM_000548.3	68	Gca/Aca																																																																														
CARD11	0	MSKCC	GRCh37	7	2963984	2963984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	269	606	1	ENST00000396946.4:c.1823G>A	p.Arg608His	p.R608H	ENST00000396946	NM_032415.4	608	cGc/cAc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450243	50450243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	170	422	2	ENST00000331340.3:c.427C>T	p.Arg143Trp	p.R143W	ENST00000331340	NM_006060.4	143	Cgg/Tgg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52584777	52584777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	188	494	0	ENST00000394830.3:c.4345C>T	p.Pro1449Ser	p.P1449S	ENST00000394830	NM_018313.4	1449	Cca/Tca																																																																														
IGF1R	0	MSKCC	GRCh37	15	99467760	99467760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs150221450		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	146	303	0	ENST00000268035.6:c.2629C>T	p.Arg877Ter	p.R877*	ENST00000268035	NM_000875.3	877	Cga/Tga																																																																														
MTOR	0	MSKCC	GRCh37	1	11187201	11187201	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	209	427	0	ENST00000361445.4:c.6217G>T	p.Ala2073Ser	p.A2073S	ENST00000361445	NM_004958.3	2073	Gcc/Tcc																																																																														
MTOR	0	MSKCC	GRCh37	1	11272941	11272942	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	182	429	0	ENST00000361445.4:c.3309dup	p.Gly1104TrpfsTer6	p.G1104Wfs*6	ENST00000361445	NM_004958.3	1103	-/T																																																																														
SPEN	0	MSKCC	GRCh37	1	16254750	16254750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	276	570	3	ENST00000375759.3:c.2015G>A	p.Arg672Gln	p.R672Q	ENST00000375759	NM_015001.2	672	cGa/cAa																																																																														
SPEN	0	MSKCC	GRCh37	1	16257845	16257845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	40	420	0	ENST00000375759.3:c.5110C>A	p.Pro1704Thr	p.P1704T	ENST00000375759	NM_015001.2	1704	Cca/Aca																																																																														
SPEN	0	MSKCC	GRCh37	1	16258844	16258844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	76	598	0	ENST00000375759.3:c.6109G>A	p.Ala2037Thr	p.A2037T	ENST00000375759	NM_015001.2	2037	Gca/Aca																																																																														
SPEN	0	MSKCC	GRCh37	1	16260969	16260969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	105	324	1	ENST00000375759.3:c.8234C>T	p.Ala2745Val	p.A2745V	ENST00000375759	NM_015001.2	2745	gCg/gTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16263779	16263779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	136	487	1	ENST00000375759.3:c.10148G>A	p.Ser3383Asn	p.S3383N	ENST00000375759	NM_015001.2	3383	aGc/aAc																																																																														
SDHB	0	MSKCC	GRCh37	1	17355199	17355199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	64	450	0	ENST00000375499.3:c.319G>A	p.Gly107Arg	p.G107R	ENST00000375499	NM_003000.2	107	Gga/Aga																																																																														
CSF3R	0	MSKCC	GRCh37	1	36941120	36941121	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	196	553	0	ENST00000361632.4:c.218dup	p.Arg74GlnfsTer7	p.R74Qfs*7	ENST00000361632		73	ggc/ggGc																																																																														
MPL	0	MSKCC	GRCh37	1	43805751	43805751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	206	709	0	ENST00000372470.3:c.807G>T	p.Trp269Cys	p.W269C	ENST00000372470	NM_005373.2	269	tgG/tgT																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798290	45798290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	40	525	0	ENST00000372115.3:c.604G>A	p.Gly202Arg	p.G202R	ENST00000372115	NM_001048171.1	202	Ggg/Agg																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46543263	46543263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	112	516	0	ENST00000262741.5:c.238C>T	p.Arg80Trp	p.R80W	ENST00000262741	NM_003629.3	80	Cgg/Tgg																																																																														
RAD54L	0	MSKCC	GRCh37	1	46739824	46739824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	37	445	0	ENST00000371975.4:c.1625G>A	p.Arg542His	p.R542H	ENST00000371975	NM_003579.3	542	cGc/cAc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46740333	46740333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	152	541	0	ENST00000371975.4:c.1813G>A	p.Ala605Thr	p.A605T	ENST00000371975	NM_003579.3	605	Gcc/Acc																																																																														
NRAS	0	MSKCC	GRCh37	1	115251190	115251190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	211	516	0	ENST00000369535.4:c.536A>G	p.Gln179Arg	p.Q179R	ENST00000369535	NM_002524.4	179	cAg/cGg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120512257	120512257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	230	484	0	ENST00000256646.2:c.985G>T	p.Gly329Cys	p.G329C	ENST00000256646	NM_024408.3	329	Ggc/Tgc																																																																														
RIT1	0	MSKCC	GRCh37	1	155880299	155880299	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	232	400	0	ENST00000368323.3:c.107-2A>G		p.X36_splice	ENST00000368323	NM_006912.5	36																																																																															
NTRK1	0	MSKCC	GRCh37	1	156834187	156834187	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79678945		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	385	862	1	ENST00000524377.1:c.254G>A	p.Arg85His	p.R85H	ENST00000524377	NM_002529.3	85	cGt/cAt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156841478	156841478	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	281	601	0	ENST00000524377.1:c.781A>G	p.Lys261Glu	p.K261E	ENST00000524377	NM_002529.3	261	Aag/Gag																																																																														
DDR2	0	MSKCC	GRCh37	1	162722920	162722920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	165	540	0	ENST00000367921.3:c.118C>A	p.Gln40Lys	p.Q40K	ENST00000367921	NM_006182.2	40	Cag/Aag																																																																														
RFWD2	0	MSKCC	GRCh37	1	175996819	175996819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	193	418	0	ENST00000367669.3:c.1618C>G	p.Leu540Val	p.L540V	ENST00000367669	NM_022457.5	540	Ctg/Gtg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176104165	176104165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	103	371	0	ENST00000367669.3:c.949G>A	p.Ala317Thr	p.A317T	ENST00000367669	NM_022457.5	317	Gct/Act																																																																														
CDC73	0	MSKCC	GRCh37	1	193121546	193121546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	164	314	0	ENST00000367435.3:c.944A>G	p.Tyr315Cys	p.Y315C	ENST00000367435	NM_024529.4	315	tAc/tGc																																																																														
PARP1	0	MSKCC	GRCh37	1	226551701	226551701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	86	539	0	ENST00000366794.5:c.2729C>T	p.Thr910Met	p.T910M	ENST00000366794	NM_001618.3	910	aCg/aTg																																																																														
FH	0	MSKCC	GRCh37	1	241680604	241680604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	173	365	0	ENST00000366560.3:c.145T>C	p.Ser49Pro	p.S49P	ENST00000366560	NM_000143.3	49	Tcc/Ccc																																																																														
SMYD3	0	MSKCC	GRCh37	1	246091304	246091305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	68	492	0	ENST00000388985.4:c.630dup	p.Asn211GlnfsTer37	p.N211Qfs*37	ENST00000388985		210	-/C																																																																														
RET	0	MSKCC	GRCh37	10	43609955	43609955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	296	713	1	ENST00000355710.3:c.1907C>T	p.Thr636Met	p.T636M	ENST00000355710	NM_020975.4	636	aCg/aTg																																																																														
RET	0	MSKCC	GRCh37	10	43615613	43615613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	199	460	0	ENST00000355710.3:c.2692G>T	p.Asp898Tyr	p.D898Y	ENST00000355710	NM_020975.4	898	Gat/Tat																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114900968	114900968	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	294	456	0	ENST00000543371.1:c.578A>G	p.His193Arg	p.H193R	ENST00000543371	NM_001198531.1	193	cAc/cGc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911497	114911497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	88	201	0	ENST00000543371.1:c.1015T>C	p.Ser339Pro	p.S339P	ENST00000543371	NM_001198531.1	339	Tcc/Ccc																																																																														
IGF2	0	MSKCC	GRCh37	11	2156648	2156648	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	294	625	0	ENST00000434045.2:c.274del	p.Glu92SerfsTer24	p.E92Sfs*24	ENST00000434045	NM_001127598.1	92	Gag/ag																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741456	17741456	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	347	722	0	ENST00000250003.3:c.127T>C	p.Phe43Leu	p.F43L	ENST00000250003	NM_002478.4	43	Ttc/Ctc																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67202519	67202519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	254	725	3	ENST00000312629.5:c.1328C>T	p.Thr443Met	p.T443M	ENST00000312629	NM_003952.2	443	aCg/aTg																																																																														
FGF19	0	MSKCC	GRCh37	11	69514058	69514058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	82	580	0	ENST00000294312.3:c.623C>T	p.Ala208Val	p.A208V	ENST00000294312	NM_005117.2	208	gCc/gTc																																																																														
FGF4	0	MSKCC	GRCh37	11	69589716	69589716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	76	146	0	ENST00000168712.1:c.137G>A	p.Arg46His	p.R46H	ENST00000168712	NM_002007.2	46	cGc/cAc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71943698	71943698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	336	617	1	ENST00000298229.2:c.1741C>T	p.Arg581Trp	p.R581W	ENST00000298229	NM_001567.3	581	Cgg/Tgg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948207	71948207	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	376	855	0	ENST00000298229.2:c.2920del	p.Ala974ProfsTer157	p.A974Pfs*157	ENST00000298229	NM_001567.3	973	gcG/gc																																																																														
YAP1	0	MSKCC	GRCh37	11	102056761	102056761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	26	326	0	ENST00000282441.5:c.701A>G	p.Asp234Gly	p.D234G	ENST00000282441	NM_001130145.2	234	gAt/gGt																																																																														
YAP1	0	MSKCC	GRCh37	11	102076768	102076768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	330	641	0	ENST00000282441.5:c.947A>G	p.Glu316Gly	p.E316G	ENST00000282441	NM_001130145.2	316	gAg/gGg																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195551	102195551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	57	457	0	ENST00000263464.3:c.311A>G	p.Asn104Ser	p.N104S	ENST00000263464	NM_001165.4	104	aAc/aGc																																																																														
ATM	0	MSKCC	GRCh37	11	108142037	108142037	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	284	556	0	ENST00000278616.4:c.2981T>A	p.Val994Asp	p.V994D	ENST00000278616	NM_000051.3	994	gTc/gAc																																																																														
ATM	0	MSKCC	GRCh37	11	108172516	108172516	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	101	231	0	ENST00000278616.4:c.5319G>T	p.Lys1773Asn	p.K1773N	ENST00000278616	NM_000051.3	1773	aaG/aaT																																																																														
ATM	0	MSKCC	GRCh37	11	108188124	108188124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	172	327	0	ENST00000278616.4:c.6223C>T	p.His2075Tyr	p.H2075Y	ENST00000278616	NM_000051.3	2075	Cat/Tat																																																																														
ATM	0	MSKCC	GRCh37	11	108204639	108204639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	43	315	0	ENST00000278616.4:c.7954C>T	p.Pro2652Ser	p.P2652S	ENST00000278616	NM_000051.3	2652	Cca/Tca																																																																														
KMT2A	0	MSKCC	GRCh37	11	118359332	118359332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	121	254	0	ENST00000534358.1:c.4336G>A	p.Val1446Met	p.V1446M	ENST00000534358	NM_005933.3	1446	Gtg/Atg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375914	118375915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	122	452	0	ENST00000534358.1:c.9313dupA	p.Ile3105AsnfsTer8	p.I3105Nfs*8	ENST00000534358	NM_005933.3	3103	caa/cAaa																																																																														
CHEK1	0	MSKCC	GRCh37	11	125499316	125499316	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	224	507	0	ENST00000428830.2:c.385A>G	p.Arg129Gly	p.R129G	ENST00000428830	NM_001114121.2	129	Agg/Ggg																																																																														
KDM5A	0	MSKCC	GRCh37	12	416952	416953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	102	407	0	ENST00000399788.2:c.3596_3597dup	p.Gly1200LysfsTer10	p.G1200Kfs*10	ENST00000399788	NM_001042603.1	1199	-/AA																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18648997	18648997	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	173	400	0	ENST00000266497.5:c.2672C>T	p.Ala891Val	p.A891V	ENST00000266497		891	gCa/gTa																																																																														
ARID2	0	MSKCC	GRCh37	12	46245089	46245089	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	70	465	0	ENST00000334344.6:c.3183A>T	p.Lys1061Asn	p.K1061N	ENST00000334344	NM_152641.2	1061	aaA/aaT																																																																														
ARID2	0	MSKCC	GRCh37	12	46245384	46245384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	201	396	0	ENST00000334344.6:c.3478C>A	p.Pro1160Thr	p.P1160T	ENST00000334344	NM_152641.2	1160	Cca/Aca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426517	49426517	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	226	825	0	ENST00000301067.7:c.11971C>T	p.Gln3991Ter	p.Q3991*	ENST00000301067	NM_003482.3	3991	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427360	49427360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	255	563	1	ENST00000301067.7:c.11128G>A	p.Gly3710Arg	p.G3710R	ENST00000301067	NM_003482.3	3710	Gga/Aga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435230	49435230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	169	492	0	ENST00000301067.7:c.6323C>T	p.Pro2108Leu	p.P2108L	ENST00000301067	NM_003482.3	2108	cCg/cTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444196	49444196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	221	807	0	ENST00000301067.7:c.3175G>T	p.Gly1059Trp	p.G1059W	ENST00000301067	NM_003482.3	1059	Ggg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445311	49445311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	253	908	1	ENST00000301067.7:c.2155C>T	p.Pro719Ser	p.P719S	ENST00000301067	NM_003482.3	719	Ccg/Tcg																																																																														
GLI1	0	MSKCC	GRCh37	12	57864780	57864780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	132	594	0	ENST00000228682.2:c.2257C>A	p.Leu753Ile	p.L753I	ENST00000228682	NM_005269.2	753	Ctt/Att																																																																														
IGF1	0	MSKCC	GRCh37	12	102813438	102813438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	134	499	3	ENST00000307046.8:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000307046	NM_001111285.1	84	cGg/cAg																																																																														
PTPN11	0	MSKCC	GRCh37	12	112893859	112893859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	137	527	0	ENST00000351677.2:c.748G>A	p.Glu250Lys	p.E250K	ENST00000351677	NM_002834.3	250	Gaa/Aaa																																																																														
TBX3	0	MSKCC	GRCh37	12	115120741	115120741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	66	670	0	ENST00000257566.3:c.265C>T	p.Pro89Ser	p.P89S	ENST00000257566	NM_016569.3	89	Cct/Tct																																																																														
RAB35	0	MSKCC	GRCh37	12	120536882	120536882	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	331	669	0	ENST00000229340.5:c.304T>A	p.Trp102Arg	p.W102R	ENST00000229340	NM_006861.6	102	Tgg/Agg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426829	121426829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	195	448	0	ENST00000257555.6:c.520G>A	p.Ala174Thr	p.A174T	ENST00000257555		174	Gcg/Acg																																																																														
SETD8	0	MSKCC	GRCh37	12	123879605	123879605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	163	405	1	ENST00000330479.4:c.301G>A	p.Ala101Thr	p.A101T	ENST00000330479	NM_020382.3	101	Gct/Act																																																																														
POLE	0	MSKCC	GRCh37	12	133219464	133219464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	285	767	1	ENST00000320574.5:c.4670C>T	p.Ala1557Val	p.A1557V	ENST00000320574	NM_006231.2	1557	gCa/gTa																																																																														
POLE	0	MSKCC	GRCh37	12	133256104	133256104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151325267		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	183	427	1	ENST00000320574.5:c.557C>T	p.Ala186Val	p.A186V	ENST00000320574	NM_006231.2	186	gCg/gTg																																																																														
LATS2	0	MSKCC	GRCh37	13	21557745	21557745	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	56	566	0	ENST00000382592.4:c.2100del	p.Lys702ArgfsTer4	p.K702Rfs*4	ENST00000382592	NM_014572.2	700	agG/ag																																																																														
CDK8	0	MSKCC	GRCh37	13	26911748	26911748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	191	489	1	ENST00000381527.3:c.173G>T	p.Gly58Val	p.G58V	ENST00000381527	NM_001260.1	58	gGg/gTg																																																																														
FLT3	0	MSKCC	GRCh37	13	28589381	28589381	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	190	476	0	ENST00000241453.7:c.2666A>G	p.Tyr889Cys	p.Y889C	ENST00000241453	NM_004119.2	889	tAc/tGc																																																																														
FLT3	0	MSKCC	GRCh37	13	28610144	28610144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	66	494	0	ENST00000241453.7:c.1346A>G	p.Gln449Arg	p.Q449R	ENST00000241453	NM_004119.2	449	cAg/cGg																																																																														
FLT1	0	MSKCC	GRCh37	13	28964116	28964116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	142	386	0	ENST00000282397.4:c.1786A>G	p.Asn596Asp	p.N596D	ENST00000282397	NM_002019.4	596	Aat/Gat																																																																														
BRCA2	0	MSKCC	GRCh37	13	32893268	32893268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	126	457	0	ENST00000380152.3:c.122C>T	p.Pro41Leu	p.P41L	ENST00000380152		41	cCc/cTc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907074	32907074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	145	416	0	ENST00000380152.3:c.1459G>A	p.Ala487Thr	p.A487T	ENST00000380152		487	Gca/Aca																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910629	32910629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	65	457	1	ENST00000380152.3:c.2137C>T	p.Gln713Ter	p.Q713*	ENST00000380152		713	Cag/Tag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911037	32911037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	227	494	0	ENST00000380152.3:c.2545G>T	p.Val849Leu	p.V849L	ENST00000380152		849	Gta/Tta																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912770	32912771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	189	414	0	ENST00000380152.3:c.4283_4284dup	p.Gln1429PhefsTer20	p.Q1429Ffs*20	ENST00000380152		1426	-/TT																																																																														
RB1	0	MSKCC	GRCh37	13	49051504	49051504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	166	393	0	ENST00000267163.4:c.2677G>A	p.Gly893Arg	p.G893R	ENST00000267163	NM_000321.2	893	Gga/Aga																																																																														
IRS2	0	MSKCC	GRCh37	13	110434802	110434802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	282	639	2	ENST00000375856.3:c.3599C>T	p.Pro1200Leu	p.P1200L	ENST00000375856	NM_003749.2	1200	cCg/cTg																																																																														
TSHR	0	MSKCC	GRCh37	14	81422035	81422035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	38	315	0	ENST00000298171.2:c.11C>T	p.Ala4Val	p.A4V	ENST00000298171	NM_000369.2	4	gCg/gTg																																																																														
DICER1	0	MSKCC	GRCh37	14	95582154	95582154	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	118	233	0	ENST00000343455.3:c.1757T>C	p.Leu586Ser	p.L586S	ENST00000343455	NM_177438.2	586	tTg/tCg																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643795	38643795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	321	588	0	ENST00000299084.4:c.1265C>A	p.Pro422His	p.P422H	ENST00000299084	NM_152594.2	422	cCt/cAt																																																																														
MGA	0	MSKCC	GRCh37	15	42042317	42042317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	245	502	0	ENST00000219905.7:c.6512G>T	p.Arg2171Met	p.R2171M	ENST00000219905	NM_001164273.1	2171	aGg/aTg																																																																														
MGA	0	MSKCC	GRCh37	15	42042378	42042378	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	267	584	0	ENST00000219905.7:c.6573G>T	p.Gln2191His	p.Q2191H	ENST00000219905	NM_001164273.1	2191	caG/caT																																																																														
MGA	0	MSKCC	GRCh37	15	42058328	42058328	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	165	331	0	ENST00000219905.7:c.8048A>G	p.His2683Arg	p.H2683R	ENST00000219905	NM_001164273.1	2683	cAt/cGt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43713287	43713287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	313	732	1	ENST00000382044.4:c.4186G>A	p.Ala1396Thr	p.A1396T	ENST00000382044	NM_001141980.1	1396	Gct/Act																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43762070	43762070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	63	505	0	ENST00000382044.4:c.1375C>T	p.Pro459Ser	p.P459S	ENST00000382044	NM_001141980.1	459	Cct/Tct																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472621	88472621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	71	353	0	ENST00000360948.2:c.1934G>A	p.Arg645His	p.R645H	ENST00000360948	NM_001012338.2	645	cGc/cAc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680664	88680664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	141	597	0	ENST00000360948.2:c.593C>A	p.Pro198His	p.P198H	ENST00000360948	NM_001012338.2	198	cCt/cAt																																																																														
BLM	0	MSKCC	GRCh37	15	91304138	91304139	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	121	538	0	ENST00000355112.3:c.1543_1544dup	p.Asn515LysfsTer17	p.N515Kfs*17	ENST00000355112	NM_000057.2	512	gga/ggAAa																																																																														
IGF1R	0	MSKCC	GRCh37	15	99192829	99192829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	250	457	0	ENST00000268035.6:c.19G>A	p.Gly7Arg	p.G7R	ENST00000268035	NM_000875.3	7	Gga/Aga																																																																														
IGF1R	0	MSKCC	GRCh37	15	99491922	99491922	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	103	488	1	ENST00000268035.6:c.3707A>G	p.Asn1236Ser	p.N1236S	ENST00000268035	NM_000875.3	1236	aAc/aGc																																																																														
SLX4	0	MSKCC	GRCh37	16	3640196	3640196	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	417	782	0	ENST00000294008.3:c.3443A>G	p.Glu1148Gly	p.E1148G	ENST00000294008	NM_032444.2	1148	gAa/gGa																																																																														
SLX4	0	MSKCC	GRCh37	16	3642754	3642754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	370	749	0	ENST00000294008.3:c.2273C>T	p.Ala758Val	p.A758V	ENST00000294008	NM_032444.2	758	gCg/gTg																																																																														
SLX4	0	MSKCC	GRCh37	16	3647607	3647607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	380	774	3	ENST00000294008.3:c.1456C>T	p.Arg486Cys	p.R486C	ENST00000294008	NM_032444.2	486	Cgt/Tgt																																																																														
SLX4	0	MSKCC	GRCh37	16	3647684	3647684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	359	712	0	ENST00000294008.3:c.1379G>A	p.Arg460His	p.R460H	ENST00000294008	NM_032444.2	460	cGc/cAc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778483	3778483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	384	938	0	ENST00000262367.5:c.6565T>C	p.Tyr2189His	p.Y2189H	ENST00000262367	NM_004380.2	2189	Tac/Cac																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858027	9858027	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	192	450	0	ENST00000330684.3:c.3374A>G	p.Glu1125Gly	p.E1125G	ENST00000330684	NM_001134407.1	1125	gAg/gGg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858741	9858741	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	74	245	0	ENST00000330684.3:c.2660T>C	p.Leu887Pro	p.L887P	ENST00000330684	NM_001134407.1	887	cTg/cCg																																																																														
PALB2	0	MSKCC	GRCh37	16	23625413	23625413	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	134	398	0	ENST00000261584.4:c.3114-1G>T		p.X1038_splice	ENST00000261584	NM_024675.3	1038																																																																															
CDH1	0	MSKCC	GRCh37	16	68862193	68862193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	155	563	1	ENST00000261769.5:c.2281G>A	p.Gly761Arg	p.G761R	ENST00000261769	NM_004360.3	761	Gga/Aga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821889	72821890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	31	358	0	ENST00000268489.5:c.10285dup	p.Arg3429ProfsTer2	p.R3429Pfs*2	ENST00000268489	NM_006885.3	3429	cgt/cCgt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822540	72822540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	186	443	0	ENST00000268489.5:c.9635del	p.Pro3212ArgfsTer29	p.P3212Rfs*29	ENST00000268489	NM_006885.3	3212	cCg/cg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822657	72822657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	240	631	1	ENST00000268489.5:c.9518C>T	p.Pro3173Leu	p.P3173L	ENST00000268489	NM_006885.3	3173	cCg/cTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828384	72828384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	188	425	0	ENST00000268489.5:c.8197C>A	p.Arg2733Ser	p.R2733S	ENST00000268489	NM_006885.3	2733	Cgt/Agt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991643	72991643	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	140	559	0	ENST00000268489.5:c.2402A>G	p.Lys801Arg	p.K801R	ENST00000268489	NM_006885.3	801	aAa/aGa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81942124	81942125	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	100	586	0	ENST00000359376.3:c.1667dup	p.Lys557GlnfsTer16	p.K557Qfs*16	ENST00000359376	NM_002661.3	554	acg/acGg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89341566	89341566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	255	432	1	ENST00000301030.4:c.7504A>G	p.Lys2502Glu	p.K2502E	ENST00000301030	NM_001256183.1	2502	Aag/Gag																																																																														
FANCA	0	MSKCC	GRCh37	16	89809327	89809327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	223	401	0	ENST00000389301.3:c.3646G>A	p.Ala1216Thr	p.A1216T	ENST00000389301	NM_000135.2	1216	Gcc/Acc																																																																														
GPS2	0	MSKCC	GRCh37	17	7217850	7217850	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	161	560	2	ENST00000380728.2:c.161del	p.Lys54ArgfsTer9	p.K54Rfs*9	ENST00000380728		54	aAg/ag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983279	15983279	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	39	374	0	ENST00000268712.3:c.3500A>G	p.Gln1167Arg	p.Q1167R	ENST00000268712	NM_006311.3	1167	cAg/cGg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983740	15983740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	185	409	0	ENST00000268712.3:c.3382C>T	p.His1128Tyr	p.H1128Y	ENST00000268712	NM_006311.3	1128	Cat/Tat																																																																														
NCOR1	0	MSKCC	GRCh37	17	15989754	15989754	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	95	196	0	ENST00000268712.3:c.3019C>A	p.Leu1007Ile	p.L1007I	ENST00000268712	NM_006311.3	1007	Ctt/Att																																																																														
NCOR1	0	MSKCC	GRCh37	17	16062141	16062141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	253	492	0	ENST00000268712.3:c.665C>T	p.Pro222Leu	p.P222L	ENST00000268712	NM_006311.3	222	cCc/cTc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37871995	37871995	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	166	544	2	ENST00000269571.5:c.1316G>A	p.Gly439Asp	p.G439D	ENST00000269571		439	gGc/gAc																																																																														
EZH1	0	MSKCC	GRCh37	17	40865263	40865263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	153	598	0	ENST00000428826.2:c.1168A>G	p.Arg390Gly	p.R390G	ENST00000428826		390	Agg/Ggg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41209151	41209151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	157	484	0	ENST00000357654.3:c.5195A>G	p.His1732Arg	p.H1732R	ENST00000357654	NM_007294.3	1732	cAt/cGt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41215947	41215947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	282	560	1	ENST00000357654.3:c.5096G>A	p.Arg1699Gln	p.R1699Q	ENST00000357654	NM_007294.3	1699	cGg/cAg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245300	41245300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	222	665	0	ENST00000357654.3:c.2248C>T	p.Leu750Phe	p.L750F	ENST00000357654	NM_007294.3	750	Ctc/Ttc																																																																														
SPOP	0	MSKCC	GRCh37	17	47699308	47699308	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	106	356	0	ENST00000347630.2:c.200G>A	p.Trp67Ter	p.W67*	ENST00000347630	NM_001007230.1	67	tGg/tAg																																																																														
MSI2	0	MSKCC	GRCh37	17	55674230	55674231	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	182	347	0	ENST00000284073.2:c.459dup	p.Gly154TrpfsTer6	p.G154Wfs*6	ENST00000284073	NM_138962.2	152	-/T																																																																														
RNF43	0	MSKCC	GRCh37	17	56435047	56435047	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	73	602	0	ENST00000407977.2:c.2090A>C	p.His697Pro	p.H697P	ENST00000407977		697	cAc/cCc																																																																														
RNF43	0	MSKCC	GRCh37	17	56492826	56492826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	143	473	1	ENST00000584437.1:c.113C>A	p.Ser38Tyr	p.S38Y	ENST00000584437		38	tCt/tAt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59878628	59878628	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	143	367	0	ENST00000259008.2:c.1126C>T	p.Gln376Ter	p.Q376*	ENST00000259008	NM_032043.2	376	Caa/Taa																																																																														
CD79B	0	MSKCC	GRCh37	17	62007437	62007437	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	28	315	0	ENST00000392795.3:c.430A>G	p.Met144Val	p.M144V	ENST00000392795	NM_001039933.1	144	Atg/Gtg																																																																														
CD79B	0	MSKCC	GRCh37	17	62007488	62007488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	158	519	0	ENST00000392795.3:c.379T>C	p.Cys127Arg	p.C127R	ENST00000392795	NM_001039933.1	127	Tgc/Cgc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39575921	39575921	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	172	394	0	ENST00000262039.4:c.854A>T	p.Asp285Val	p.D285V	ENST00000262039	NM_002647.2	285	gAt/gTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581190	48581190	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	171	354	1	ENST00000342988.3:c.494A>T	p.Asp165Val	p.D165V	ENST00000342988	NM_005359.5	165	gAc/gTc																																																																														
MALT1	0	MSKCC	GRCh37	18	56348560	56348561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	132	255	0	ENST00000348428.3:c.374dup	p.Gly126ArgfsTer40	p.G126Rfs*40	ENST00000348428	NM_006785.3	123	agc/agCc																																																																														
MALT1	0	MSKCC	GRCh37	18	56414980	56414980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	237	441	0	ENST00000348428.3:c.2381C>T	p.Ala794Val	p.A794V	ENST00000348428	NM_006785.3	794	gCt/gTt																																																																														
TCF3	6929	MSKCC	GRCh37	19	1620979	1620979	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1329397192		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	64	792	3	ENST00000344749.5:c.1081del	p.Gln361ArgfsTer33	p.Q361Rfs*33	ENST00000344749	NM_001136139.2	361	Cag/ag																																																																														
TCF3	0	MSKCC	GRCh37	19	1632361	1632361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	182	746	0	ENST00000344749.5:c.189C>A	p.Asp63Glu	p.D63E	ENST00000344749	NM_001136139.2	63	gaC/gaA																																																																														
DOT1L	0	MSKCC	GRCh37	19	2202735	2202735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	266	648	0	ENST00000398665.3:c.744G>T	p.Glu248Asp	p.E248D	ENST00000398665	NM_032482.2	248	gaG/gaT																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210634	2210634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	246	531	0	ENST00000398665.3:c.1131G>T	p.Glu377Asp	p.E377D	ENST00000398665	NM_032482.2	377	gaG/gaT																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222401	2222401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	149	497	0	ENST00000398665.3:c.3233G>A	p.Ser1078Asn	p.S1078N	ENST00000398665	NM_032482.2	1078	aGc/aAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5258082	5258082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	270	515	0	ENST00000357368.4:c.652G>A	p.Ala218Thr	p.A218T	ENST00000357368	NM_002850.3	218	Gcc/Acc																																																																														
INSR	0	MSKCC	GRCh37	19	7141702	7141702	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	225	542	0	ENST00000302850.5:c.2668C>T	p.Arg890Ter	p.R890*	ENST00000302850	NM_000208.2	890	Cga/Tga																																																																														
DNMT1	0	MSKCC	GRCh37	19	10250398	10250398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	68	478	0	ENST00000340748.4:c.3854G>A	p.Arg1285His	p.R1285H	ENST00000340748		1285	cGc/cAc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600491	10600491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	303	606	0	ENST00000171111.5:c.1364C>A	p.Pro455Gln	p.P455Q	ENST00000171111	NM_203500.1	455	cCa/cAa																																																																														
CARM1	0	MSKCC	GRCh37	19	11015748	11015749	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	176	361	0	ENST00000327064.4:c.344dup	p.Asn115LysfsTer76	p.N115Kfs*76	ENST00000327064	NM_199141.1	114	-/A																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11105656	11105656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	242	552	0	ENST00000344626.4:c.1572G>T	p.Lys524Asn	p.K524N	ENST00000344626	NM_003072.3	524	aaG/aaT																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11107188	11107188	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	68	512	1	ENST00000344626.4:c.1781del	p.Gly594AspfsTer19	p.G594Dfs*19	ENST00000344626	NM_003072.3	594	Gga/ga																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138494	11138494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	266	543	0	ENST00000344626.4:c.3250C>A	p.Leu1084Ile	p.L1084I	ENST00000344626	NM_003072.3	1084	Ctt/Att																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272072	15272072	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	308	683	0	ENST00000263388.2:c.6367del	p.Glu2124ArgfsTer25	p.E2124Rfs*25	ENST00000263388	NM_000435.2	2123	Ctt/tt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15298716	15298716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	59	704	0	ENST00000263388.2:c.1582G>T	p.Gly528Cys	p.G528C	ENST00000263388	NM_000435.2	528	Ggc/Tgc																																																																														
BRD4	0	MSKCC	GRCh37	19	15354214	15354214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	222	708	0	ENST00000263377.2:c.2666C>T	p.Ala889Val	p.A889V	ENST00000263377	NM_058243.2	889	gCc/gTc																																																																														
BRD4	0	MSKCC	GRCh37	19	15367037	15367037	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	115	254	0	ENST00000263377.2:c.1589A>G	p.Gln530Arg	p.Q530R	ENST00000263377	NM_058243.2	530	cAg/cGg																																																																														
JAK3	0	MSKCC	GRCh37	19	17943481	17943481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	268	496	0	ENST00000458235.1:c.2527C>T	p.Pro843Ser	p.P843S	ENST00000458235	NM_000215.3	843	Ccg/Tcg																																																																														
JAK3	0	MSKCC	GRCh37	19	17955066	17955066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	367	745	2	ENST00000458235.1:c.161G>A	p.Cys54Tyr	p.C54Y	ENST00000458235	NM_000215.3	54	tGc/tAc																																																																														
UPF1	0	MSKCC	GRCh37	19	18965942	18965942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	244	587	2	ENST00000262803.5:c.1435G>A	p.Val479Met	p.V479M	ENST00000262803	NM_002911.3	479	Gtg/Atg																																																																														
UPF1	0	MSKCC	GRCh37	19	18967047	18967047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	193	607	1	ENST00000262803.5:c.1762T>C	p.Ser588Pro	p.S588P	ENST00000262803	NM_002911.3	588	Tcg/Ccg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36218354	36218354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	322	706	0	ENST00000222270.7:c.4133T>C	p.Ile1378Thr	p.I1378T	ENST00000222270	NM_014727.1	1378	aTc/aCc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224099	36224099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	374	737	2	ENST00000222270.7:c.6649C>T	p.Gln2217Ter	p.Q2217*	ENST00000222270	NM_014727.1	2217	Cag/Tag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36229441	36229441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	112	406	1	ENST00000222270.7:c.8131C>T	p.Arg2711Cys	p.R2711C	ENST00000222270	NM_014727.1	2711	Cgt/Tgt																																																																														
AXL	0	MSKCC	GRCh37	19	41759553	41759553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	345	662	0	ENST00000301178.4:c.1976G>A	p.Gly659Asp	p.G659D	ENST00000301178	NM_021913.4	659	gGc/gAc																																																																														
ERF	0	MSKCC	GRCh37	19	42754535	42754535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	61	764	1	ENST00000222329.4:c.205G>A	p.Val69Ile	p.V69I	ENST00000222329	NM_006494.2	69	Gtt/Att																																																																														
CIC	0	MSKCC	GRCh37	19	42794506	42794506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	311	793	0	ENST00000575354.2:c.1586G>A	p.Gly529Asp	p.G529D	ENST00000575354	NM_015125.3	529	gGt/gAt																																																																														
CIC	0	MSKCC	GRCh37	19	42794988	42794988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	281	638	0	ENST00000575354.2:c.2068C>T	p.Pro690Ser	p.P690S	ENST00000575354	NM_015125.3	690	Ccc/Tcc																																																																														
BBC3	0	MSKCC	GRCh37	19	47731593	47731593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	83	136	0	ENST00000449228.1:c.199C>A	p.Leu67Ile	p.L67I	ENST00000449228	NM_001127240.2	67	Ctc/Atc																																																																														
POLD1	0	MSKCC	GRCh37	19	50916691	50916691	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	266	523	0	ENST00000440232.2:c.2166del	p.Phe723SerfsTer5	p.F723Sfs*5	ENST00000440232	NM_002691.3	721	acG/ac																																																																														
POLD1	0	MSKCC	GRCh37	19	50917074	50917074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	360	768	3	ENST00000440232.2:c.2326C>T	p.Arg776Trp	p.R776W	ENST00000440232	NM_002691.3	776	Cgg/Tgg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25505333	25505333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	162	519	0	ENST00000264709.3:c.425G>A	p.Gly142Asp	p.G142D	ENST00000264709	NM_175629.2	142	gGc/gAc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25973274	25973274	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	42	212	0	ENST00000435504.4:c.1151T>C	p.Leu384Pro	p.L384P	ENST00000435504		384	cTg/cCg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25982515	25982515	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	89	186	0	ENST00000435504.4:c.776-1G>T		p.X259_splice	ENST00000435504		259																																																																															
ASXL2	0	MSKCC	GRCh37	2	26022395	26022395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	169	364	0	ENST00000435504.4:c.262C>T	p.Pro88Ser	p.P88S	ENST00000435504		88	Ccg/Tcg																																																																														
ALK	0	MSKCC	GRCh37	2	29416548	29416548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	110	484	2	ENST00000389048.3:c.4405C>A	p.Pro1469Thr	p.P1469T	ENST00000389048	NM_004304.4	1469	Ccg/Acg																																																																														
ALK	0	MSKCC	GRCh37	2	29416719	29416719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	89	352	0	ENST00000389048.3:c.4234C>T	p.Pro1412Ser	p.P1412S	ENST00000389048	NM_004304.4	1412	Cct/Tct																																																																														
ALK	0	MSKCC	GRCh37	2	29754800	29754800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	113	392	0	ENST00000389048.3:c.1135C>A	p.Pro379Thr	p.P379T	ENST00000389048	NM_004304.4	379	Ccc/Acc																																																																														
ALK	0	MSKCC	GRCh37	2	30143174	30143174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	238	562	1	ENST00000389048.3:c.352G>A	p.Ala118Thr	p.A118T	ENST00000389048	NM_004304.4	118	Gca/Aca																																																																														
SOS1	0	MSKCC	GRCh37	2	39224122	39224122	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	189	569	1	ENST00000402219.2:c.3022T>C	p.Tyr1008His	p.Y1008H	ENST00000402219	NM_005633.3	1008	Tat/Cat																																																																														
MSH2	0	MSKCC	GRCh37	2	47690171	47690171	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	186	399	0	ENST00000233146.2:c.1388T>C	p.Val463Ala	p.V463A	ENST00000233146	NM_000251.2	463	gTg/gCg																																																																														
MSH2	0	MSKCC	GRCh37	2	47693883	47693883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	271	483	0	ENST00000233146.2:c.1597C>A	p.Leu533Ile	p.L533I	ENST00000233146	NM_000251.2	533	Ctt/Att																																																																														
MSH6	0	MSKCC	GRCh37	2	48010380	48010380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	100	650	0	ENST00000234420.5:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000234420	NM_000179.2	3	cGa/cAa																																																																														
REL	0	MSKCC	GRCh37	2	61147754	61147754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	46	339	0	ENST00000295025.8:c.1064G>A	p.Gly355Glu	p.G355E	ENST00000295025	NM_002908.2	355	gGa/gAa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99193581	99193581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	186	496	0	ENST00000074304.5:c.2776A>G	p.Thr926Ala	p.T926A	ENST00000074304	NM_001134224.1	926	Acc/Gcc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198272822	198272822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	188	422	0	ENST00000335508.6:c.1139C>T	p.Pro380Leu	p.P380L	ENST00000335508	NM_012433.2	380	cCt/cTt																																																																														
CASP8	0	MSKCC	GRCh37	2	202149610	202149610	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	205	436	0	ENST00000358485.4:c.1051A>T	p.Ile351Phe	p.I351F	ENST00000358485	NM_001080125.1	351	Atc/Ttc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248710	212248710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	159	335	0	ENST00000342788.4:c.3557C>T	p.Pro1186Leu	p.P1186L	ENST00000342788	NM_005235.2	1186	cCc/cTc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530078	212530078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	23	271	0	ENST00000342788.4:c.1841G>A	p.Cys614Tyr	p.C614Y	ENST00000342788	NM_005235.2	614	tGc/tAc																																																																														
IRS1	0	MSKCC	GRCh37	2	227662842	227662842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	151	554	1	ENST00000305123.5:c.613G>A	p.Val205Met	p.V205M	ENST00000305123	NM_005544.2	205	Gtg/Atg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022441	31022442	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	24	197	0	ENST00000375687.4:c.1932_1934dup	p.Gly646dup	p.G646dup	ENST00000375687	NM_015338.5	646	-/GGG																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31368209	31368209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	204	670	1	ENST00000328111.2:c.80G>A	p.Cys27Tyr	p.C27Y	ENST00000328111	NM_006892.3	27	tGc/tAc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31388081	31388081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	93	316	0	ENST00000328111.2:c.1882G>A	p.Val628Met	p.V628M	ENST00000328111	NM_006892.3	628	Gtg/Atg																																																																														
TOP1	0	MSKCC	GRCh37	20	39746808	39746808	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	58	540	0	ENST00000361337.2:c.1823-1G>A		p.X608_splice	ENST00000361337	NM_003286.2	608																																																																															
PTPRT	0	MSKCC	GRCh37	20	41420082	41420082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	26	310	0	ENST00000373198.4:c.239C>A	p.Ser80Tyr	p.S80Y	ENST00000373198	NM_133170.3	80	tCt/tAt																																																																														
RTEL1	0	MSKCC	GRCh37	20	62319737	62319737	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	79	677	0	ENST00000508582.2:c.1792C>T	p.Arg598Trp	p.R598W	ENST00000508582		598	Cgg/Tgg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259203	36259204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	99	715	0	ENST00000300305.3:c.287dup	p.Asn96LysfsTer42	p.N96Kfs*42	ENST00000300305		96	aac/aaAc																																																																														
U2AF1	0	MSKCC	GRCh37	21	44515615	44515615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	102	696	1	ENST00000291552.4:c.281G>T	p.Gly94Val	p.G94V	ENST00000291552	NM_006758.2	94	gGg/gTg																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45656994	45656994	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	199	596	0	ENST00000407780.3:c.162G>A	p.Trp54Ter	p.W54*	ENST00000407780	NM_001283052.1	54	tgG/tgA																																																																														
RAC2	0	MSKCC	GRCh37	22	37637628	37637628	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	352	770	5	ENST00000249071.6:c.106G>A	p.Val36Met	p.V36M	ENST00000249071	NM_002872.4	36	Gtg/Atg																																																																														
EP300	0	MSKCC	GRCh37	22	41513436	41513436	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	266	592	1	ENST00000263253.7:c.340G>T	p.Gly114Ter	p.G114*	ENST00000263253	NM_001429.3	114	Gga/Tga																																																																														
EP300	0	MSKCC	GRCh37	22	41547846	41547846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	191	381	1	ENST00000263253.7:c.2827C>T	p.Pro943Ser	p.P943S	ENST00000263253	NM_001429.3	943	Cca/Tca																																																																														
PPARG	0	MSKCC	GRCh37	3	12422989	12422989	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	35	433	0	ENST00000287820.6:c.479A>G	p.Lys160Arg	p.K160R	ENST00000287820	NM_015869.4	160	aAg/aGg																																																																														
MLH1	0	MSKCC	GRCh37	3	37067433	37067433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	61	504	0	ENST00000231790.2:c.1344G>T	p.Glu448Asp	p.E448D	ENST00000231790	NM_000249.3	448	gaG/gaT																																																																														
SETD2	0	MSKCC	GRCh37	3	47164477	47164477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	120	335	0	ENST00000409792.3:c.1649G>A	p.Ser550Asn	p.S550N	ENST00000409792	NM_014159.6	550	aGt/aAt																																																																														
SETD2	0	MSKCC	GRCh37	3	47165230	47165230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	100	325	0	ENST00000409792.3:c.896G>A	p.Ser299Asn	p.S299N	ENST00000409792	NM_014159.6	299	aGt/aAt																																																																														
MST1	0	MSKCC	GRCh37	3	49723029	49723029	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	184	358	0	ENST00000449682.2:c.1387G>A	p.Ala463Thr	p.A463T	ENST00000449682	NM_020998.3	463	Gct/Act																																																																														
MST1R	0	MSKCC	GRCh37	3	49932949	49932949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	117	733	0	ENST00000296474.3:c.2995C>A	p.Leu999Met	p.L999M	ENST00000296474	NM_002447.2	999	Ctg/Atg																																																																														
MST1R	0	MSKCC	GRCh37	3	49940111	49940112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	230	549	0	ENST00000296474.3:c.931dup	p.Ala311GlyfsTer26	p.A311Gfs*26	ENST00000296474	NM_002447.2	311	gcc/gGcc																																																																														
MST1R	0	MSKCC	GRCh37	3	49940243	49940243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	53	616	1	ENST00000296474.3:c.800C>T	p.Ala267Val	p.A267V	ENST00000296474	NM_002447.2	267	gCc/gTc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52713639	52713639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	126	412	0	ENST00000394830.3:c.89G>A	p.Gly30Asp	p.G30D	ENST00000394830	NM_018313.4	30	gGc/gAc																																																																														
SHQ1	0	MSKCC	GRCh37	3	72861887	72861887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	244	551	0	ENST00000325599.8:c.995C>A	p.Pro332Gln	p.P332Q	ENST00000325599	NM_018130.2	332	cCa/cAa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920478	134920478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	254	575	1	ENST00000398015.3:c.2293C>A	p.Leu765Ile	p.L765I	ENST00000398015	NM_004441.4	765	Ctc/Atc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134977922	134977922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	256	589	0	ENST00000398015.3:c.2915T>C	p.Met972Thr	p.M972T	ENST00000398015	NM_004441.4	972	aTg/aCg																																																																														
ATR	0	MSKCC	GRCh37	3	142204007	142204007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	181	442	0	ENST00000350721.4:c.6196C>T	p.Arg2066Trp	p.R2066W	ENST00000350721	NM_001184.3	2066	Cgg/Tgg																																																																														
ATR	0	MSKCC	GRCh37	3	142274739	142274740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	46	324	0	ENST00000350721.4:c.2319_2320dup	p.Ile774LysfsTer6	p.I774Kfs*6	ENST00000350721	NM_001184.3	774	ata/aAAta																																																																														
ATR	0	MSKCC	GRCh37	3	142278206	142278207	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	123	511	0	ENST00000350721.4:c.1618dup	p.Tyr540LeufsTer6	p.Y540Lfs*6	ENST00000350721	NM_001184.3	540	tac/tTac																																																																														
ATR	0	MSKCC	GRCh37	3	142281577	142281578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	143	524	0	ENST00000350721.4:c.666dup	p.Arg223Ter	p.R223*	ENST00000350721	NM_001184.3	222	-/T																																																																														
PRKCI	0	MSKCC	GRCh37	3	169998127	169998128	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAA			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	125	681	0	ENST00000295797.4:c.824_826dup	p.Lys275dup	p.K275dup	ENST00000295797	NM_002740.5	275	tta/ttAAAa																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185169181	185169181	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	39	451	0	ENST00000265026.3:c.1276C>T	p.Gln426Ter	p.Q426*	ENST00000265026	NM_004721.4	426	Cag/Tag																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186505039	186505039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	128	270	0	ENST00000323963.5:c.895A>G	p.Thr299Ala	p.T299A	ENST00000323963		299	Aca/Gca																																																																														
BCL6	0	MSKCC	GRCh37	3	187444518	187444518	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	167	432	1	ENST00000232014.4:c.1708+1G>A		p.X570_splice	ENST00000232014	NM_001130845.1	570																																																																															
FGFR3	0	MSKCC	GRCh37	4	1805488	1805488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	274	664	5	ENST00000260795.2:c.1000G>A	p.Ala334Thr	p.A334T	ENST00000260795		334	Gcc/Acc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807167	1807167	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751635116		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	307	722	3	ENST00000260795.2:c.1498G>A	p.Ala500Thr	p.A500T	ENST00000260795		500	Gcc/Acc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152124	55152124	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	225	629	0	ENST00000257290.5:c.2556A>C	p.Lys852Asn	p.K852N	ENST00000257290	NM_006206.4	852	aaA/aaC																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213920	66213920	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	116	353	0	ENST00000273854.3:c.2510G>A	p.Gly837Glu	p.G837E	ENST00000273854	NM_004439.5	837	gGa/gAa																																																																														
FAM175A	0	MSKCC	GRCh37	4	84384746	84384747	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	42	280	0	ENST00000321945.7:c.696dup	p.Val233SerfsTer5	p.V233Sfs*5	ENST00000321945	NM_139076.2	232	-/A																																																																														
INPP4B	0	MSKCC	GRCh37	4	143007349	143007349	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	101	330	0	ENST00000262992.4:c.2435del	p.Asn812IlefsTer10	p.N812Ifs*10	ENST00000262992	NM_001101669.1	812	aAt/at																																																																														
INPP4B	0	MSKCC	GRCh37	4	143067091	143067091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	173	374	0	ENST00000262992.4:c.1622A>G	p.Lys541Arg	p.K541R	ENST00000262992	NM_001101669.1	541	aAa/aGa																																																																														
FAT1	0	MSKCC	GRCh37	4	187541534	187541534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	115	370	0	ENST00000441802.2:c.6206T>C	p.Val2069Ala	p.V2069A	ENST00000441802	NM_005245.3	2069	gTc/gCc																																																																														
SDHA	0	MSKCC	GRCh37	5	226094	226094	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	202	428	1	ENST00000264932.6:c.553C>T	p.Gln185Ter	p.Q185*	ENST00000264932	NM_004168.2	185	Cag/Tag																																																																														
DROSHA	0	MSKCC	GRCh37	5	31468155	31468155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	208	501	0	ENST00000344624.3:c.2257C>T	p.Arg753Cys	p.R753C	ENST00000344624		753	Cgt/Tgt																																																																														
RICTOR	0	MSKCC	GRCh37	5	38942976	38942976	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	180	395	0	ENST00000357387.3:c.5011A>G	p.Arg1671Gly	p.R1671G	ENST00000357387	NM_152756.3	1671	Agg/Ggg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38959918	38959918	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	79	293	1	ENST00000357387.3:c.2014G>T	p.Gly672Ter	p.G672*	ENST00000357387	NM_152756.3	672	Gga/Tga																																																																														
PLK2	0	MSKCC	GRCh37	5	57750455	57750456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	209	437	0	ENST00000274289.3:c.2012dup	p.Asn671LysfsTer15	p.N671Kfs*15	ENST00000274289	NM_006622.3	671	aat/aaAt																																																																														
MSH3	0	MSKCC	GRCh37	5	79952352	79952352	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	203	483	0	ENST00000265081.6:c.358+2T>C		p.X120_splice	ENST00000265081	NM_002439.4	120																																																																															
MSH3	0	MSKCC	GRCh37	5	80083470	80083470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	56	661	0	ENST00000265081.6:c.2522C>A	p.Ala841Asp	p.A841D	ENST00000265081	NM_002439.4	841	gCt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112102105	112102105	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	88	295	0	ENST00000257430.4:c.218A>G	p.Lys73Arg	p.K73R	ENST00000257430	NM_000038.5	73	aAa/aGa																																																																														
APC	0	MSKCC	GRCh37	5	112162846	112162846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	173	406	0	ENST00000257430.4:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000257430	NM_000038.5	484	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112178280	112178280	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	179	396	0	ENST00000257430.4:c.6992del	p.Pro2331LeufsTer6	p.P2331Lfs*6	ENST00000257430	NM_000038.5	2330	tCc/tc																																																																														
RAD50	0	MSKCC	GRCh37	5	131924458	131924458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	222	415	1	ENST00000265335.6:c.1131G>T	p.Gln377His	p.Q377H	ENST00000265335		377	caG/caT																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149497349	149497349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	129	549	0	ENST00000261799.4:c.2969C>T	p.Ala990Val	p.A990V	ENST00000261799	NM_002609.3	990	gCc/gTc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149500882	149500882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	49	448	0	ENST00000261799.4:c.2348C>A	p.Pro783His	p.P783H	ENST00000261799	NM_002609.3	783	cCt/cAt																																																																														
NSD1	0	MSKCC	GRCh37	5	176562759	176562759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	253	540	1	ENST00000439151.2:c.655C>T	p.His219Tyr	p.H219Y	ENST00000439151	NM_022455.4	219	Cac/Tac																																																																														
E2F3	0	MSKCC	GRCh37	6	20480087	20480087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	109	370	0	ENST00000346618.3:c.404G>A	p.Arg135Lys	p.R135K	ENST00000346618	NM_001949.4	135	aGg/aAg																																																																														
E2F3	0	MSKCC	GRCh37	6	20488478	20488478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	199	417	0	ENST00000346618.3:c.1134A>C	p.Lys378Asn	p.K378N	ENST00000346618	NM_001949.4	378	aaA/aaC																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045691	26045691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	27	251	0	ENST00000540144.1:c.53G>A	p.Arg18His	p.R18H	ENST00000540144	NM_003531.2	18	cGc/cAc																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225480	26225480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	43	294	0	ENST00000360408.1:c.98C>T	p.Thr33Met	p.T33M	ENST00000360408	NM_003532.2	33	aCg/aTg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29912276	29912276	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	268	467	0	ENST00000376809.5:c.896-1G>T		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																															
MDC1	0	MSKCC	GRCh37	6	30672554	30672554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	165	528	0	ENST00000376406.3:c.4406C>A	p.Pro1469His	p.P1469H	ENST00000376406	NM_014641.2	1469	cCt/cAt																																																																														
MDC1	0	MSKCC	GRCh37	6	30673397	30673397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	296	631	0	ENST00000376406.3:c.3563G>T	p.Arg1188Met	p.R1188M	ENST00000376406	NM_014641.2	1188	aGg/aTg																																																																														
MDC1	0	MSKCC	GRCh37	6	30675701	30675701	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	98	744	0	ENST00000376406.3:c.2655A>T	p.Arg885Ser	p.R885S	ENST00000376406	NM_014641.2	885	agA/agT																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32178567	32178567	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	272	625	0	ENST00000375023.3:c.2827del	p.Ala943ProfsTer105	p.A943Pfs*105	ENST00000375023	NM_004557.3	943	Gcc/cc																																																																														
TAP2	0	MSKCC	GRCh37	6	32797830	32797830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	28	384	0	ENST00000374899.4:c.1672G>A	p.Gly558Ser	p.G558S	ENST00000374899	NM_018833.2	558	Ggt/Agt																																																																														
TAP2	0	MSKCC	GRCh37	6	32805536	32805536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	374	774	1	ENST00000374899.4:c.475C>A	p.Leu159Ile	p.L159I	ENST00000374899	NM_018833.2	159	Ctt/Att																																																																														
TAP1	0	MSKCC	GRCh37	6	32818840	32818840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	302	655	2	ENST00000354258.4:c.1111G>A	p.Val371Met	p.V371M	ENST00000354258	NM_000593.5	371	Gtg/Atg																																																																														
TAP1	0	MSKCC	GRCh37	6	32820966	32820966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	109	720	2	ENST00000354258.4:c.628G>A	p.Ala210Thr	p.A210T	ENST00000354258	NM_000593.5	210	Gca/Aca																																																																														
TAP1	0	MSKCC	GRCh37	6	32821442	32821442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	280	597	3	ENST00000354258.4:c.152G>A	p.Gly51Asp	p.G51D	ENST00000354258	NM_000593.5	51	gGc/gAc																																																																														
DAXX	0	MSKCC	GRCh37	6	33287212	33287213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	46	460	0	ENST00000374542.5:c.1884dup	p.Cys629LeufsTer29	p.C629Lfs*29	ENST00000374542	NM_001141970.1	628	-/C																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120846	94120846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	101	469	0	ENST00000369303.4:c.205C>T	p.Arg69Ter	p.R69*	ENST00000369303	NM_004440.3	69	Cga/Tga																																																																														
PRDM1	0	MSKCC	GRCh37	6	106547331	106547331	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	177	431	0	ENST00000369096.4:c.568A>G	p.Ile190Val	p.I190V	ENST00000369096	NM_001198.3	190	Atc/Gtc																																																																														
ROS1	0	MSKCC	GRCh37	6	117609800	117609800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	229	503	0	ENST00000368508.3:c.6899G>A	p.Cys2300Tyr	p.C2300Y	ENST00000368508	NM_002944.2	2300	tGt/tAt																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138201285	138201285	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	57	427	0	ENST00000237289.4:c.1984T>C	p.Cys662Arg	p.C662R	ENST00000237289	NM_001270507.1	662	Tgc/Cgc																																																																														
LATS1	0	MSKCC	GRCh37	6	149983071	149983071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	240	534	0	ENST00000253339.5:c.3187G>A	p.Gly1063Arg	p.G1063R	ENST00000253339		1063	Gga/Aga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157222590	157222591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	229	510	0	ENST00000346085.5:c.1862dup	p.His622AlafsTer31	p.H622Afs*31	ENST00000346085	NM_020732.3	619	-/C																																																																														
ARID1B	0	MSKCC	GRCh37	6	157405956	157405956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	137	478	0	ENST00000346085.5:c.2198G>T	p.Gly733Val	p.G733V	ENST00000346085	NM_020732.3	733	gGg/gTg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157431687	157431687	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	157	460	0	ENST00000346085.5:c.2363A>G	p.Gln788Arg	p.Q788R	ENST00000346085	NM_020732.3	788	cAg/cGg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522010	157522010	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	180	416	0	ENST00000346085.5:c.4282A>G	p.Ser1428Gly	p.S1428G	ENST00000346085	NM_020732.3	1428	Agc/Ggc																																																																														
PARK2	0	MSKCC	GRCh37	6	161970031	161970031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	224	590	0	ENST00000366898.1:c.938A>G	p.Asn313Ser	p.N313S	ENST00000366898	NM_004562.2	313	aAc/aGc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729828	41729828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	32	279	0	ENST00000242208.4:c.701G>A	p.Gly234Asp	p.G234D	ENST00000242208	NM_002192.2	234	gGc/gAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55211156	55211156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	227	507	0	ENST00000275493.2:c.399G>T	p.Lys133Asn	p.K133N	ENST00000275493	NM_005228.3	133	aaG/aaT																																																																														
HGF	0	MSKCC	GRCh37	7	81336661	81336661	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	171	315	0	ENST00000222390.5:c.1561G>T	p.Gly521Ter	p.G521*	ENST00000222390	NM_000601.4	521	Gga/Tga																																																																														
HGF	0	MSKCC	GRCh37	7	81350138	81350138	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	199	394	0	ENST00000222390.5:c.1194T>A	p.Asn398Lys	p.N398K	ENST00000222390	NM_000601.4	398	aaT/aaA																																																																														
HGF	0	MSKCC	GRCh37	7	81399226	81399226	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	307	707	0	ENST00000222390.5:c.62T>C	p.Leu21Pro	p.L21P	ENST00000222390	NM_000601.4	21	cTg/cCg																																																																														
MET	0	MSKCC	GRCh37	7	116397514	116397514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	160	418	1	ENST00000397752.3:c.1886C>T	p.Ala629Val	p.A629V	ENST00000397752	NM_000245.2	629	gCc/gTc																																																																														
MET	0	MSKCC	GRCh37	7	116399505	116399505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	173	396	0	ENST00000397752.3:c.2325G>T	p.Met775Ile	p.M775I	ENST00000397752	NM_000245.2	775	atG/atT																																																																														
SMO	0	MSKCC	GRCh37	7	128829270	128829270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	200	647	0	ENST00000249373.3:c.278C>T	p.Ala93Val	p.A93V	ENST00000249373	NM_005631.4	93	gCc/gTc																																																																														
BRAF	0	MSKCC	GRCh37	7	140434476	140434476	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	118	477	0	ENST00000288602.6:c.2222A>G	p.Glu741Gly	p.E741G	ENST00000288602	NM_004333.4	741	gAg/gGg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453195	140453195	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	42	300	0	ENST00000288602.6:c.1742-2A>G		p.X581_splice	ENST00000288602	NM_004333.4	581																																																																															
KMT2C	0	MSKCC	GRCh37	7	151845181	151845181	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	210	473	0	ENST00000262189.6:c.13831T>A	p.Phe4611Ile	p.F4611I	ENST00000262189	NM_170606.2	4611	Ttt/Att																																																																														
KMT2C	0	MSKCC	GRCh37	7	151868350	151868350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	125	325	0	ENST00000262189.6:c.9452A>G	p.Gln3151Arg	p.Q3151R	ENST00000262189	NM_170606.2	3151	cAg/cGg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877084	151877084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	193	428	0	ENST00000262189.6:c.7277A>G	p.Glu2426Gly	p.E2426G	ENST00000262189	NM_170606.2	2426	gAg/gGg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878262	151878262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	260	513	0	ENST00000262189.6:c.6683G>T	p.Arg2228Met	p.R2228M	ENST00000262189	NM_170606.2	2228	aGg/aTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151900068	151900068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	149	439	0	ENST00000262189.6:c.4043A>G	p.Tyr1348Cys	p.Y1348C	ENST00000262189	NM_170606.2	1348	tAc/tGc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151927407	151927407	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	30	47	0	ENST00000262189.6:c.2770-1G>T		p.X924_splice	ENST00000262189	NM_170606.2	924																																																																															
WHSC1L1	0	MSKCC	GRCh37	8	38162894	38162894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	95	618	0	ENST00000317025.8:c.2312G>T	p.Gly771Val	p.G771V	ENST00000317025	NM_023034.1	771	gGg/gTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187126	38187126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	248	647	0	ENST00000317025.8:c.1351A>G	p.Ser451Gly	p.S451G	ENST00000317025	NM_023034.1	451	Agc/Ggc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38314891	38314891	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	32	438	0	ENST00000425967.3:c.173del	p.Pro58ArgfsTer78	p.P58Rfs*78	ENST00000425967	NM_001174067.1	58	cCg/cg																																																																														
SOX17	0	MSKCC	GRCh37	8	55370864	55370864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	141	562	0	ENST00000297316.4:c.166G>A	p.Ala56Thr	p.A56T	ENST00000297316	NM_022454.3	56	Gcc/Acc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372052	55372052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	41	514	1	ENST00000297316.4:c.742G>A	p.Ala248Thr	p.A248T	ENST00000297316	NM_022454.3	248	Gcc/Acc																																																																														
LYN	0	MSKCC	GRCh37	8	56911028	56911028	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	247	551	0	ENST00000519728.1:c.1174A>T	p.Ile392Phe	p.I392F	ENST00000519728	NM_002350.3	392	Att/Ttt																																																																														
PREX2	0	MSKCC	GRCh37	8	68965417	68965417	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	341	747	0	ENST00000288368.4:c.1033del	p.Thr345HisfsTer13	p.T345Hfs*13	ENST00000288368	NM_024870.2	343	gcA/gc																																																																														
NBN	0	MSKCC	GRCh37	8	90967511	90967511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	123	268	0	ENST00000265433.3:c.1397G>T	p.Arg466Met	p.R466M	ENST00000265433	NM_002485.4	466	aGg/aTg																																																																														
AGO2	0	MSKCC	GRCh37	8	141545607	141545607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	223	753	0	ENST00000220592.5:c.2231C>T	p.Thr744Ile	p.T744I	ENST00000220592	NM_012154.3	744	aCc/aTc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738858	145738858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	274	706	0	ENST00000428558.2:c.2207C>T	p.Ala736Val	p.A736V	ENST00000428558	NM_004260.3	736	gCc/gTc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739732	145739732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	258	516	0	ENST00000428558.2:c.1719G>T	p.Gln573His	p.Q573H	ENST00000428558	NM_004260.3	573	caG/caT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500802	8500802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	185	391	0	ENST00000356435.5:c.2080G>A	p.Gly694Ser	p.G694S	ENST00000356435		694	Ggc/Agc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971028	21971028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	273	482	0	ENST00000304494.5:c.330G>T	p.Trp110Cys	p.W110C	ENST00000304494	NM_000077.4	110	tgG/tgT																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971028	21971028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	273	482	0	ENST00000304494.5:c.330G>T	p.Trp110Cys	p.W110C	ENST00000304494	NM_000077.4	110	tgG/tgT																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971028	21971028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	273	482	0	ENST00000304494.5:c.330G>T	p.Trp110Cys	p.W110C	ENST00000304494	NM_000077.4	110	tgG/tgT																																																																														
NTRK2	0	MSKCC	GRCh37	9	87325592	87325592	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	84	381	0	ENST00000277120.3:c.469A>G	p.Met157Val	p.M157V	ENST00000277120		157	Atg/Gtg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98231349	98231349	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	277	499	0	ENST00000331920.6:c.1934A>G	p.Tyr645Cys	p.Y645C	ENST00000331920	NM_000264.3	645	tAc/tGc																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128322023	128322023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	176	591	0	ENST00000265960.3:c.737C>T	p.Pro246Leu	p.P246L	ENST00000265960	NM_001006617.1	246	cCc/cTc																																																																														
ABL1	0	MSKCC	GRCh37	9	133747526	133747526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	40	457	0	ENST00000318560.5:c.833T>C	p.Met278Thr	p.M278T	ENST00000318560	NM_005157.4	278	aTg/aCg																																																																														
ABL1	0	MSKCC	GRCh37	9	133760724	133760724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	272	775	1	ENST00000318560.5:c.3047G>A	p.Arg1016His	p.R1016H	ENST00000318560	NM_005157.4	1016	cGc/cAc																																																																														
RXRA	0	MSKCC	GRCh37	9	137300016	137300016	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137938878		P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	281	622	0	ENST00000481739.1:c.301G>A	p.Val101Ile	p.V101I	ENST00000481739	NM_002957.4	101	Gtc/Atc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139409082	139409082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	199	831	0	ENST00000277541.6:c.2087G>A	p.Gly696Asp	p.G696D	ENST00000277541	NM_017617.3	696	gGc/gAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39923082	39923082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	285	255	1	ENST00000378444.4:c.3626G>A	p.Arg1209His	p.R1209H	ENST00000378444	NM_001123385.1	1209	cGc/cAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39934192	39934192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	333	321	1	ENST00000378444.4:c.407C>T	p.Ala136Val	p.A136V	ENST00000378444	NM_001123385.1	136	gCc/gTc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44937676	44937676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	150	325	0	ENST00000377967.4:c.2864C>T	p.Pro955Leu	p.P955L	ENST00000377967	NM_021140.2	955	cCa/cTa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949968	44949968	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	15	168	2	ENST00000377967.4:c.3737C>T	p.Ala1246Val	p.A1246V	ENST00000377967	NM_021140.2	1246	gCc/gTc																																																																														
AMER1	0	MSKCC	GRCh37	X	63410849	63410849	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	261	267	0	ENST00000330258.3:c.2318T>C	p.Leu773Pro	p.L773P	ENST00000330258	NM_152424.3	773	cTg/cCg																																																																														
AMER1	0	MSKCC	GRCh37	X	63411237	63411237	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	84	330	0	ENST00000330258.3:c.1930del	p.Gln644ArgfsTer9	p.Q644Rfs*9	ENST00000330258	NM_152424.3	644	Cag/ag																																																																														
BTK	0	MSKCC	GRCh37	X	100604932	100604932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	197	230	0	ENST00000308731.7:c.1921C>T	p.Arg641Cys	p.R641C	ENST00000308731	NM_000061.2	641	Cgt/Tgt																																																																														
XIAP	0	MSKCC	GRCh37	X	123020147	123020147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	340	339	0	ENST00000355640.3:c.635C>A	p.Pro212His	p.P212H	ENST00000355640		212	cCt/cAt																																																																														
ALK	0	MSKCC	GRCh37	2	29416548	29416548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	35	486	0	ENST00000389048.3:c.4405C>T	p.Pro1469Ser	p.P1469S	ENST00000389048	NM_004304.4	1469	Ccg/Tcg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211909	36211909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	127	869	0	ENST00000222270.7:c.1660C>A	p.Pro554Thr	p.P554T	ENST00000222270	NM_014727.1	554	Ccc/Acc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25973274	25973277	+	missense_variant	Missense_Mutation	ONP	AGGC	AGGC	GGGT			P-0027929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	17	204	0	ENST00000435504.4:c.1148_1151delinsACCC	p.Gly383_Leu384delinsAspPro	p.G383_L384delinsDP	ENST00000435504		383	gGCCTg/gACCCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0028067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	44	476	0				ENST00000310581	NM_198253.2																																																																																
ARID2	0	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	43	412	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0028067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	102	477	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
ATM	0	MSKCC	GRCh37	11	108170486	108170486	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	36	361	0	ENST00000278616.4:c.5051C>G	p.Ser1684Cys	p.S1684C	ENST00000278616	NM_000051.3	1684	tCt/tGt																																																																														
PAK7	0	MSKCC	GRCh37	20	9561382	9561382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	49	495	0	ENST00000353224.5:c.400G>A	p.Glu134Lys	p.E134K	ENST00000353224	NM_177990.2	134	Gaa/Aaa																																																																														
RASA1	0	MSKCC	GRCh37	5	86564795	86564795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	76	703	0	ENST00000274376.6:c.527C>T	p.Pro176Leu	p.P176L	ENST00000274376	NM_002890.2	176	cCt/cTt																																																																														
PREX2	0	MSKCC	GRCh37	8	68942891	68942891	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	90	573	0	ENST00000288368.4:c.703G>A	p.Glu235Lys	p.E235K	ENST00000288368	NM_024870.2	235	Gag/Aag																																																																														
PREX2	0	MSKCC	GRCh37	8	69002814	69002814	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0028067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	43	281	0	ENST00000288368.4:c.2114G>A	p.Gly705Glu	p.G705E	ENST00000288368	NM_024870.2	705	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	725	485	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	451	417	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	402	620	0	ENST00000269305.4:c.657delC	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc																																																																														
BARD1	0	MSKCC	GRCh37	2	215632276	215632276	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	223	530	0	ENST00000260947.4:c.1498G>C	p.Asp500His	p.D500H	ENST00000260947	NM_000465.2	500	Gat/Cat																																																																														
SETD2	0	MSKCC	GRCh37	3	47127765	47127765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	103	460	0	ENST00000409792.3:c.5317C>T	p.Arg1773Cys	p.R1773C	ENST00000409792	NM_014159.6	1773	Cgt/Tgt																																																																														
TCF3	0	MSKCC	GRCh37	19	1632383	1632383	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	196	706	0	ENST00000344749.5:c.167C>G	p.Ser56Ter	p.S56*	ENST00000344749	NM_001136139.2	56	tCa/tGa																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041572	14041572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	113	450	0	ENST00000311895.7:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000311895	NM_005236.2	707	Gaa/Aaa																																																																														
AKT3	0	MSKCC	GRCh37	1	243809203	243809203	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	94	344	0	ENST00000263826.5:c.421A>G	p.Lys141Glu	p.K141E	ENST00000263826	NM_005465.4	141	Aaa/Gaa																																																																														
ATM	0	MSKCC	GRCh37	11	108218035	108218035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	237	398	1	ENST00000278616.4:c.8614C>A	p.His2872Asn	p.H2872N	ENST00000278616	NM_000051.3	2872	Cat/Aat																																																																														
NF1	0	MSKCC	GRCh37	17	29508788	29508788	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	201	434	0	ENST00000358273.4:c.715C>T	p.Gln239Ter	p.Q239*	ENST00000358273	NM_001042492.2	239	Cag/Tag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36219778	36219778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	117	704	0	ENST00000222270.7:c.4675G>A	p.Asp1559Asn	p.D1559N	ENST00000222270	NM_014727.1	1559	Gat/Aat																																																																														
ERCC3	0	MSKCC	GRCh37	2	128015243	128015243	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	115	520	0	ENST00000285398.2:c.2278G>T	p.Glu760Ter	p.E760*	ENST00000285398	NM_000122.1	760	Gag/Tag																																																																														
SHQ1	0	MSKCC	GRCh37	3	72842125	72842125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	246	365	0	ENST00000325599.8:c.1123G>T	p.Ala375Ser	p.A375S	ENST00000325599	NM_018130.2	375	Gcg/Tcg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143081599	143081599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	266	492	0	ENST00000262992.4:c.1475C>A	p.Thr492Lys	p.T492K	ENST00000262992	NM_001101669.1	492	aCa/aAa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38957819	38957819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	42	294	0	ENST00000357387.3:c.2434C>G	p.Pro812Ala	p.P812A	ENST00000357387	NM_152756.3	812	Cca/Gca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8525025	8525025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	148	333	2	ENST00000356435.5:c.579G>T	p.Gln193His	p.Q193H	ENST00000356435		193	caG/caT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0028118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	276	554	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	381	623	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100080	157100094	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCCGC	GGCGGCGGCGGCCGC	-			P-0028118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	92	59	0	ENST00000346085.5:c.1029_1043del	p.Ala346_Ala350del	p.A346_A350del	ENST00000346085	NM_020732.3	339	gtGGCGGCGGCGGCCGCg/gtg																																																																														
BLM	0	MSKCC	GRCh37	15	91292797	91292798	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0028118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	156	532	0	ENST00000355112.3:c.303_304del	p.Gly102TrpfsTer40	p.G102Wfs*40	ENST00000355112	NM_000057.2	100	cAG/c																																																																														
EZH1	0	MSKCC	GRCh37	17	40876321	40876321	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0028118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	304	534	0	ENST00000428826.2:c.366+2T>C		p.X122_splice	ENST00000428826		122																																																																															
PBRM1	0	MSKCC	GRCh37	3	52651430	52651430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	349	593	0	ENST00000394830.3:c.1666C>A	p.Pro556Thr	p.P556T	ENST00000394830	NM_018313.4	556	Cct/Act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	59	482	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	58	635	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
DOT1L	0	MSKCC	GRCh37	19	2220185	2220185	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	43	625	0	ENST00000398665.3:c.2770G>T	p.Gly924Cys	p.G924C	ENST00000398665	NM_032482.2	924	Ggt/Tgt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974720	21974720	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	46	388	0	ENST00000304494.5:c.107del	p.Ala36GlyfsTer17	p.A36Gfs*17	ENST00000304494	NM_000077.4	36	gCg/gg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974720	21974720	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	46	388	0	ENST00000304494.5:c.107del	p.Ala36GlyfsTer17	p.A36Gfs*17	ENST00000304494	NM_000077.4	36	gCg/gg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0028121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	33	401	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	0	MSKCC	GRCh37	1	27099386	27099387	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0028121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	57	823	0	ENST00000324856.7:c.3625_3626dup	p.Gly1210LeufsTer7	p.G1210Lfs*7	ENST00000324856	NM_006015.4	1208	aac/aaCCc																																																																														
TSC1	0	MSKCC	GRCh37	9	135781290	135781291	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	47	609	0	ENST00000298552.3:c.1674dup	p.Cys559LeufsTer5	p.C559Lfs*5	ENST00000298552	NM_001162426.1	558	-/C																																																																														
ALK	0	MSKCC	GRCh37	2	29443613	29443613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			934	174	748	0	ENST00000389048.3:c.3604G>A	p.Gly1202Arg	p.G1202R	ENST00000389048	NM_004304.4	1202	Gga/Aga																																																																														
ALK	0	MSKCC	GRCh37	2	29445273	29445273	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			737	133	616	1	ENST00000389048.3:c.3452C>T	p.Thr1151Met	p.T1151M	ENST00000389048	NM_004304.4	1151	aCg/aTg																																																																														
POLD1	0	MSKCC	GRCh37	19	50902729	50902729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			980	174	907	0	ENST00000440232.2:c.304G>A	p.Asp102Asn	p.D102N	ENST00000440232	NM_002691.3	102	Gac/Aac																																																																														
SHOC2	0	MSKCC	GRCh37	10	112764487	112764487	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			811	129	526	1	ENST00000369452.4:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000369452	NM_007373.3	366	Cga/Tga																																																																														
DICER1	0	MSKCC	GRCh37	14	95562861	95562862	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0009301-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	76	333	0	ENST00000343455.3:c.4395_4396del	p.Lys1466AsnfsTer10	p.K1466Nfs*10	ENST00000343455	NM_177438.2	1465	aaGAaa/aaaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0017214-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			892	75	566	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1780	358	570	0	ENST00000263967.3:c.278G>T	p.Arg93Leu	p.R93L	ENST00000263967	NM_006218.2	93	cGg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	201	634	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																														
EZH2	0	MSKCC	GRCh37	7	148507443	148507443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	154	450	0	ENST00000320356.2:c.2011C>G	p.Leu671Val	p.L671V	ENST00000320356	NM_004456.4	671	Ctg/Gtg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49415856	49415858	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	85	402	0	ENST00000301067.7:c.16489_16491delATC	p.Ile5497del	p.I5497del	ENST00000301067	NM_003482.3	5497	ATC/-																																																																														
DICER1	0	MSKCC	GRCh37	14	95582990	95582990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	83	325	0	ENST00000343455.3:c.1552G>A	p.Ala518Thr	p.A518T	ENST00000343455	NM_177438.2	518	Gca/Aca																																																																														
BLM	0	MSKCC	GRCh37	15	91304069	91304069	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			773	220	610	0	ENST00000355112.3:c.1467del	p.Arg489SerfsTer13	p.R489Sfs*13	ENST00000355112	NM_000057.2	489	aGg/ag																																																																														
ERCC2	0	MSKCC	GRCh37	19	45855832	45855832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	94	805	0	ENST00000391945.4:c.1978G>T	p.Ala660Ser	p.A660S	ENST00000391945	NM_000400.3	660	Gcg/Tcg																																																																														
CASP8	0	MSKCC	GRCh37	2	202141680	202141680	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	144	410	0	ENST00000358485.4:c.968A>T	p.His323Leu	p.H323L	ENST00000358485	NM_001080125.1	323	cAc/cTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790179	40790179	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	120	337	0	ENST00000373198.4:c.2552A>T	p.Asp851Val	p.D851V	ENST00000373198	NM_133170.3	851	gAt/gTt																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24135779	24135779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	174	560	0	ENST00000263121.7:c.266C>G	p.Thr89Ser	p.T89S	ENST00000263121	NM_003073.3	89	aCc/aGc																																																																														
PREX2	0	MSKCC	GRCh37	8	68968096	68968096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	254	493	0	ENST00000288368.4:c.1125G>C	p.Trp375Cys	p.W375C	ENST00000288368	NM_024870.2	375	tgG/tgC																																																																														
RBM10	0	MSKCC	GRCh37	X	47045134	47045134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	232	310	0	ENST00000329236.7:c.2141G>T	p.Arg714Leu	p.R714L	ENST00000329236	NM_001204466.1	714	cGg/cTg																																																																														
RET	0	MSKCC	GRCh37	10	43596162	43596162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	144	450	0	ENST00000355710.3:c.329G>A	p.Ser110Asn	p.S110N	ENST00000355710	NM_020975.4	110	aGt/aAt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361244	66361244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	51	300	0	ENST00000273854.3:c.928T>C	p.Phe310Leu	p.F310L	ENST00000273854	NM_004439.5	310	Ttc/Ctc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	164	473	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578551	7578553	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AGT	AGT	-			P-0027762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	129	593	0	ENST00000269305.4:c.377_379del	p.Tyr126del	p.Y126del	ENST00000269305	NM_001126112.2	126	tACTcc/tcc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928231	178928232	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAG			P-0027762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	72	325	0	ENST00000263967.3:c.1418_1420dup	p.Leu473_Glu474insVal	p.L473_E474insV	ENST00000263967	NM_006218.2	473	tta/tTAGta																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056057	26056057	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	55	223	0	ENST00000343677.2:c.600del	p.Lys201ArgfsTer?	p.K201Rfs*?	ENST00000343677	NM_005319.3	200	ccC/cc																																																																														
RASA1	0	MSKCC	GRCh37	5	86564372	86564372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	65	466	1	ENST00000274376.6:c.104G>T	p.Arg35Leu	p.R35L	ENST00000274376	NM_002890.2	35	cGg/cTg																																																																														
INHBA	0	MSKCC	GRCh37	7	41729871	41729871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	55	459	0	ENST00000242208.4:c.658G>T	p.Val220Phe	p.V220F	ENST00000242208	NM_002192.2	220	Gtc/Ttc																																																																														
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	102	684	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	66	562	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0027819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	31	344	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
XIAP	0	MSKCC	GRCh37	X	123026603	123026603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	50	798	0	ENST00000355640.3:c.1079C>A	p.Pro360Gln	p.P360Q	ENST00000355640		360	cCa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578378	7578379	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	215	692	0	ENST00000269305.4:c.551dup	p.Asp184GlufsTer2	p.D184Efs*2	ENST00000269305	NM_001126112.2	184	gat/gaAt																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739325	145739325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	291	770	0	ENST00000428558.2:c.2045G>A	p.Arg682Lys	p.R682K	ENST00000428558	NM_004260.3	682	aGg/aAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	91	725	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	108	657	0	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
SDHA	0	MSKCC	GRCh37	5	226092	226092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	67	434	0	ENST00000264932.6:c.551G>T	p.Gly184Val	p.G184V	ENST00000264932	NM_004168.2	184	gGg/gTg																																																																														
MET	0	MSKCC	GRCh37	7	116395569	116395569	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	81	578	0	ENST00000397752.3:c.1862C>T	p.Thr621Ile	p.T621I	ENST00000397752	NM_000245.2	621	aCa/aTa																																																																														
TET1	0	MSKCC	GRCh37	10	70446282	70446282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	89	769	2	ENST00000373644.4:c.5222G>T	p.Arg1741Leu	p.R1741L	ENST00000373644	NM_030625.2	1741	cGc/cTc																																																																														
FGF3	0	MSKCC	GRCh37	11	69625180	69625180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	61	795	0	ENST00000334134.2:c.613G>T	p.Gly205Trp	p.G205W	ENST00000334134	NM_005247.2	205	Ggg/Tgg																																																																														
SOCS1	0	MSKCC	GRCh37	16	11349130	11349130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	42	291	0	ENST00000332029.2:c.206G>T	p.Arg69Leu	p.R69L	ENST00000332029	NM_003745.1	69	cGc/cTc																																																																														
NF1	0	MSKCC	GRCh37	17	29550532	29550532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	40	711	0	ENST00000358273.4:c.1792A>G	p.Lys598Glu	p.K598E	ENST00000358273	NM_001042492.2	598	Aag/Gag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790018	40790018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	42	634	0	ENST00000373198.4:c.2713G>C	p.Gly905Arg	p.G905R	ENST00000373198	NM_133170.3	905	Ggc/Cgc																																																																														
RAF1	0	MSKCC	GRCh37	3	12626158	12626183	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGAAACAAAGCCCAAGAATGCTCTCA	TGAAACAAAGCCCAAGAATGCTCTCA	-			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	26	331	0	ENST00000251849.4:c.1804-27_1804-2del		p.X602_splice	ENST00000251849	NM_002880.3	602																																																																															
LYN	0	MSKCC	GRCh37	8	56866422	56866422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	86	766	0	ENST00000519728.1:c.669G>T	p.Glu223Asp	p.E223D	ENST00000519728	NM_002350.3	223	gaG/gaT																																																																														
PREX2	0	MSKCC	GRCh37	8	69030834	69030834	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	131	603	0	ENST00000288368.4:c.3376A>T	p.Ser1126Cys	p.S1126C	ENST00000288368	NM_024870.2	1126	Agc/Tgc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53224128	53224129	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0027822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	127	456	0	ENST00000375401.3:c.3422_3423delinsTT	p.Arg1141Ile	p.R1141I	ENST00000375401	NM_004187.3	1141	aGG/aTT																																																																														
TP53	0	MSKCC	GRCh37	17	7577571	7577571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	224	687	0	ENST00000269305.4:c.710del	p.Met237SerfsTer10	p.M237Sfs*10	ENST00000269305	NM_001126112.2	237	aTg/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7579383	7579383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	168	743	0	ENST00000269305.4:c.304A>G	p.Thr102Ala	p.T102A	ENST00000269305	NM_001126112.2	102	Acc/Gcc																																																																														
SETD2	0	MSKCC	GRCh37	3	47164348	47164348	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	187	395	0	ENST00000409792.3:c.1778C>G	p.Pro593Arg	p.P593R	ENST00000409792	NM_014159.6	593	cCt/cGt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843634	156843634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201035170		P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	241	820	4	ENST00000524377.1:c.1060G>A	p.Val354Ile	p.V354I	ENST00000524377	NM_002529.3	354	Gtc/Atc																																																																														
NUF2	0	MSKCC	GRCh37	1	163318754	163318755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	279	561	1	ENST00000271452.3:c.1150dup	p.Arg384LysfsTer6	p.R384Kfs*6	ENST00000271452	NM_145697.2	382	gaa/gAaa																																																																														
LATS2	0	MSKCC	GRCh37	13	21562493	21562493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	10	37	0	ENST00000382592.4:c.1426G>A	p.Ala476Thr	p.A476T	ENST00000382592	NM_014572.2	476	Gcc/Acc																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643503	38643503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	1124	674	4	ENST00000299084.4:c.973C>T	p.Arg325Ter	p.R325*	ENST00000299084	NM_152594.2	325	Cga/Tga																																																																														
CYLD	0	MSKCC	GRCh37	16	50828336	50828336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	182	475	0	ENST00000398568.2:c.2674G>T	p.Asp892Tyr	p.D892Y	ENST00000398568	NM_001042412.1	892	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	363	594	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	250	508	11	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																														
BRIP1	0	MSKCC	GRCh37	17	59770808	59770808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	195	562	1	ENST00000259008.2:c.2558C>T	p.Pro853Leu	p.P853L	ENST00000259008	NM_032043.2	853	cCa/cTa																																																																														
MSH3	0	MSKCC	GRCh37	5	79974804	79974804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	528	632	1	ENST00000265081.6:c.1232G>A	p.Arg411His	p.R411H	ENST00000265081	NM_002439.4	411	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112173278	112173278	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	101	295	0	ENST00000257430.4:c.1987C>T	p.Gln663Ter	p.Q663*	ENST00000257430	NM_000038.5	663	Caa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	177	311	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0028033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	81	643	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																														
GATA2	0	MSKCC	GRCh37	3	128205684	128205684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	66	667	1	ENST00000341105.2:c.191C>T	p.Ala64Val	p.A64V	ENST00000341105	NM_032638.4	64	gCt/gTt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1952878	1952878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	88	785	0	ENST00000382891.5:c.1961C>T	p.Ser654Leu	p.S654L	ENST00000382891	NM_133335.3	654	tCa/tTa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188823	32188823	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs8192585		P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	285	581	1	ENST00000375023.3:c.731C>T	p.Ser244Leu	p.S244L	ENST00000375023	NM_004557.3	244	tCg/tTg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	319	338	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	267	444	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	577	576	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	193	410	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
PTEN	0	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	259	362	1	ENST00000371953.3:c.274G>C	p.Asp92His	p.D92H	ENST00000371953	NM_000314.4	92	Gac/Cac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	172	529	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	106	310	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
TERT	0	MSKCC	GRCh37	5	1293662	1293662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	358	647	0	ENST00000310581.5:c.1339C>T	p.Arg447Cys	p.R447C	ENST00000310581	NM_198253.2	447	Cgc/Tgc																																																																														
TSC2	0	MSKCC	GRCh37	16	2121805	2121807	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	280	667	0	ENST00000219476.3:c.1973_1975del	p.Lys658del	p.K658del	ENST00000219476	NM_000548.3	656	gAGAag/gag																																																																														
CCND1	0	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	416	621	0	ENST00000227507.2:c.859C>T	p.Pro287Ser	p.P287S	ENST00000227507	NM_053056.2	287	Ccc/Tcc																																																																														
NSD1	0	MSKCC	GRCh37	5	176673750	176673750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	209	443	2	ENST00000439151.2:c.4455del	p.Val1486Ter	p.V1486*	ENST00000439151	NM_022455.4	1484	Aaa/aa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678508	88678508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183806623		P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	52	364	0	ENST00000360948.2:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000360948	NM_001012338.2	343	cGg/cAg																																																																														
E2F3	0	MSKCC	GRCh37	6	20402537	20402537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	204	344	0	ENST00000346618.3:c.74T>C	p.Val25Ala	p.V25A	ENST00000346618	NM_001949.4	25	gTc/gCc																																																																														
ATR	545	MSKCC	GRCh37	3	142268379	142268380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	147	421	0	ENST00000350721.4:c.3112dup	p.Ser1038PhefsTer11	p.S1038Ffs*11	ENST00000350721	NM_001184.3	1038	tct/tTct																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	229	434	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	324	458	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370236	40370236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764965457		P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	195	667	12	ENST00000293328.3:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000293328	NM_012448.3	368	Cag/ag																																																																														
POLE	0	MSKCC	GRCh37	12	133219487	133219487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	307	672	0	ENST00000320574.5:c.4647del	p.Lys1550AsnfsTer12	p.K1550Nfs*12	ENST00000320574	NM_006231.2	1549	ccC/cc																																																																														
MST1	0	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	10	50	0	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																														
HNF1A	0	MSKCC	GRCh37	12	121431367	121431367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	271	477	1	ENST00000257555.6:c.571G>T	p.Gly191Cys	p.G191C	ENST00000257555		191	Ggt/Tgt																																																																														
JAK3	0	MSKCC	GRCh37	19	17954643	17954643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	388	730	2	ENST00000458235.1:c.251del	p.Pro84ArgfsTer63	p.P84Rfs*63	ENST00000458235	NM_000215.3	84	cCg/cg																																																																														
CASP8	0	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	265	475	0	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563349	21563349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	377	761	0	ENST00000382592.4:c.570del	p.Tyr191ThrfsTer49	p.Y191Tfs*49	ENST00000382592	NM_014572.2	190	ccC/cc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	37	428	3	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																														
NF1	0	MSKCC	GRCh37	17	29552143	29552144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	79	267	0	ENST00000358273.4:c.1882dup	p.Tyr628LeufsTer6	p.Y628Lfs*6	ENST00000358273	NM_001042492.2	626	ctt/cTtt																																																																														
MET	0	MSKCC	GRCh37	7	116339926	116339926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	198	409	2	ENST00000397752.3:c.788C>T	p.Thr263Met	p.T263M	ENST00000397752	NM_000245.2	263	aCg/aTg																																																																														
TCF3	0	MSKCC	GRCh37	19	1625696	1625696	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	357	587	1	ENST00000344749.5:c.378del	p.Ser127GlnfsTer17	p.S127Qfs*17	ENST00000344749	NM_001136139.2	126	ctG/ct																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	329	546	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
GATA2	0	MSKCC	GRCh37	3	128204992	128204992	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	263	525	2	ENST00000341105.2:c.449del	p.Gly150GlufsTer68	p.G150Efs*68	ENST00000341105	NM_032638.4	150	gGa/ga																																																																														
BARD1	0	MSKCC	GRCh37	2	215645975	215645975	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	159	354	0	ENST00000260947.4:c.623delA	p.Lys208ArgfsTer4	p.K208Rfs*4	ENST00000260947	NM_000465.2	208	aAg/ag																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957496	175957496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	154	492	1	ENST00000367669.3:c.1900C>T	p.Arg634Cys	p.R634C	ENST00000367669	NM_022457.5	634	Cgt/Tgt																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225632	26225632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	43	406	0	ENST00000360408.1:c.250C>T	p.Arg84Cys	p.R84C	ENST00000360408	NM_003532.2	84	Cgc/Tgc																																																																														
MET	0	MSKCC	GRCh37	7	116340168	116340168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	147	235	0	ENST00000397752.3:c.1030G>A	p.Gly344Arg	p.G344R	ENST00000397752	NM_000245.2	344	Ggg/Agg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120464881	120464881	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	209	384	0	ENST00000256646.2:c.5191G>T	p.Gly1731Ter	p.G1731*	ENST00000256646	NM_024408.3	1731	Gga/Tga																																																																														
INPPL1	0	MSKCC	GRCh37	11	71940594	71940594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	308	535	2	ENST00000298229.2:c.745C>T	p.Gln249Ter	p.Q249*	ENST00000298229	NM_001567.3	249	Cag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108121532	108121532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	180	409	0	ENST00000278616.4:c.1340G>A	p.Arg447Gln	p.R447Q	ENST00000278616	NM_000051.3	447	cGa/cAa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425752	49425752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	269	545	0	ENST00000301067.7:c.12736C>T	p.Pro4246Ser	p.P4246S	ENST00000301067	NM_003482.3	4246	Cct/Tct																																																																														
POLE	0	MSKCC	GRCh37	12	133209289	133209292	+	frameshift_variant	Frame_Shift_Del	DEL	GCTG	GCTG	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	69	629	0	ENST00000320574.5:c.6094_6097del	p.Gln2032SerfsTer15	p.Q2032Sfs*15	ENST00000320574	NM_006231.2	2032	CAGCtc/tc																																																																														
LATS2	0	MSKCC	GRCh37	13	21549227	21549227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	376	771	0	ENST00000382592.4:c.3049G>T	p.Gly1017Cys	p.G1017C	ENST00000382592	NM_014572.2	1017	Ggt/Tgt																																																																														
CDK8	0	MSKCC	GRCh37	13	26975408	26975408	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	136	455	0	ENST00000381527.3:c.1038del	p.Phe346LeufsTer14	p.F346Lfs*14	ENST00000381527	NM_001260.1	345	gTt/gt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911472	32911472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	121	392	0	ENST00000380152.3:c.2980G>A	p.Ala994Thr	p.A994T	ENST00000380152		994	Gca/Aca																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061541	38061541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	137	148	0	ENST00000250448.2:c.448C>T	p.Arg150Cys	p.R150C	ENST00000250448	NM_004496.3	150	Cgc/Tgc																																																																														
MGA	0	MSKCC	GRCh37	15	42032402	42032402	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	191	387	0	ENST00000219905.7:c.4585+1G>T		p.X1529_splice	ENST00000219905	NM_001164273.1	1529																																																																															
NTRK3	0	MSKCC	GRCh37	15	88483862	88483862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	299	547	0	ENST00000360948.2:c.1708G>A	p.Ala570Thr	p.A570T	ENST00000360948	NM_001012338.2	570	Gct/Act																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350747	89350747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	300	743	0	ENST00000301030.4:c.2203G>C	p.Glu735Gln	p.E735Q	ENST00000301030	NM_001256183.1	735	Gag/Cag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351542	89351542	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	331	594	0	ENST00000301030.4:c.1408G>T	p.Gly470Ter	p.G470*	ENST00000301030	NM_001256183.1	470	Gga/Tga																																																																														
RNF43	0	MSKCC	GRCh37	17	56435153	56435153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	339	598	1	ENST00000407977.2:c.1984G>A	p.Glu662Lys	p.E662K	ENST00000407977		662	Gag/Aag																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554039	63554039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	296	509	0	ENST00000307078.5:c.700T>C	p.Trp234Arg	p.W234R	ENST00000307078	NM_004655.3	234	Tgg/Cgg																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39618740	39618740	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	104	227	0	ENST00000262039.4:c.1969-2del		p.X657_splice	ENST00000262039	NM_002647.2	657																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11107184	11107186	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs1484395538		P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	261	555	0	ENST00000344626.4:c.1778_1780del	p.Glu593del	p.E593del	ENST00000344626	NM_003072.3	592	gcAGAa/gca																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627379	14627381	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	70	749	0	ENST00000254322.2:c.689_691del	p.Asn230del	p.N230del	ENST00000254322	NM_006145.1	230	aACAtt/att																																																																														
BRD4	0	MSKCC	GRCh37	19	15375451	15375451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	297	612	0	ENST00000263377.2:c.976C>T	p.Arg326Trp	p.R326W	ENST00000263377	NM_058243.2	326	Cgg/Tgg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212144	36212144	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	153	368	0	ENST00000222270.7:c.1898del	p.Pro633HisfsTer27	p.P633Hfs*27	ENST00000222270	NM_014727.1	632	tCc/tc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46607691	46607692	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	299	620	0	ENST00000263734.3:c.1886_1887del	p.Ser629PhefsTer86	p.S629Ffs*86	ENST00000263734	NM_001430.4	627	cCT/c																																																																														
ERCC3	0	MSKCC	GRCh37	2	128028913	128028913	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	267	467	3	ENST00000285398.2:c.1944del	p.Met650TrpfsTer32	p.M650Wfs*32	ENST00000285398	NM_000122.1	648	aaA/aa																																																																														
BAP1	0	MSKCC	GRCh37	3	52436362	52436362	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	289	535	0	ENST00000460680.1:c.2132A>C	p.Lys711Thr	p.K711T	ENST00000460680	NM_004656.3	711	aAg/aCg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185146575	185146575	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	220	507	0	ENST00000265026.3:c.206T>C	p.Leu69Ser	p.L69S	ENST00000265026	NM_004721.4	69	tTg/tCg																																																																														
TET2	0	MSKCC	GRCh37	4	106164071	106164071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	123	307	1	ENST00000380013.4:c.3581C>A	p.Pro1194His	p.P1194H	ENST00000380013	NM_001127208.2	1194	cCt/cAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187518902	187518902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	230	549	0	ENST00000441802.2:c.12302G>A	p.Gly4101Asp	p.G4101D	ENST00000441802	NM_005245.3	4101	gGc/gAc																																																																														
RASA1	0	MSKCC	GRCh37	5	86645061	86645061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	96	330	0	ENST00000274376.6:c.1133C>T	p.Pro378Leu	p.P378L	ENST00000274376	NM_002890.2	378	cCc/cTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982059	93982059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	168	445	1	ENST00000369303.4:c.1406C>A	p.Pro469His	p.P469H	ENST00000369303	NM_004440.3	469	cCc/cAc																																																																														
PMS2	0	MSKCC	GRCh37	7	6026834	6026834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	225	467	0	ENST00000265849.7:c.1562C>T	p.Ala521Val	p.A521V	ENST00000265849	NM_000535.5	521	gCc/gTc																																																																														
RAC1	0	MSKCC	GRCh37	7	6439775	6439775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	254	458	0	ENST00000356142.4:c.301T>C	p.Phe101Leu	p.F101L	ENST00000356142	NM_018890.3	101	Ttt/Ctt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874967	151874967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	104	277	0	ENST00000262189.6:c.7571G>T	p.Arg2524Met	p.R2524M	ENST00000262189	NM_170606.2	2524	aGg/aTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878634	151878634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	196	475	1	ENST00000262189.6:c.6311C>T	p.Ala2104Val	p.A2104V	ENST00000262189	NM_170606.2	2104	gCa/gTa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391536	139391536	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	385	682	0	ENST00000277541.6:c.6655C>G	p.Leu2219Val	p.L2219V	ENST00000277541	NM_017617.3	2219	Ctg/Gtg																																																																														
CYLD	0	MSKCC	GRCh37	16	50811826	50811826	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0028036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	62	446	0	ENST00000398568.2:c.1103C>A	p.Ser368Ter	p.S368*	ENST00000398568	NM_001042412.1	368	tCa/tAa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778652	3778687	+	inframe_deletion	In_Frame_Del	DEL	GCCAGGCTGGGGTTGCATGCCGGGCTGGGACTGGAG	GCCAGGCTGGGGTTGCATGCCGGGCTGGGACTGGAG	-			P-0028036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	105	475	1	ENST00000262367.5:c.6361_6396del	p.Leu2121_Gly2132del	p.L2121_G2132del	ENST00000262367	NM_004380.2	2121	CTCCAGTCCCAGCCCGGCATGCAACCCCAGCCTGGC/-																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399948	139399948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	212	567	2	ENST00000277541.6:c.4400G>T	p.Cys1467Phe	p.C1467F	ENST00000277541	NM_017617.3	1467	tGc/tTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413055	139413055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0028036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	143	402	0	ENST00000277541.6:c.1087del	p.His363MetfsTer268	p.H363Mfs*268	ENST00000277541	NM_017617.3	363	Cat/at																																																																														
CDH1	0	MSKCC	GRCh37	16	68855985	68855985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	144	470	1	ENST00000261769.5:c.1793G>A	p.Arg598Gln	p.R598Q	ENST00000261769	NM_004360.3	598	cGa/cAa																																																																														
SOX2	0	MSKCC	GRCh37	3	181430939	181430939	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	93	556	0	ENST00000325404.1:c.791C>A	p.Pro264His	p.P264H	ENST00000325404	NM_003106.3	264	cCc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	206	454	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	168	548	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																														
IGF1R	0	MSKCC	GRCh37	15	99486169	99486169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	180	390	0	ENST00000268035.6:c.3475G>C	p.Asp1159His	p.D1159H	ENST00000268035	NM_000875.3	1159	Gat/Cat																																																																														
RIT1	0	MSKCC	GRCh37	1	155870386	155870387	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	96	435	0	ENST00000368323.3:c.452_453delinsTT	p.Ala151Val	p.A151V	ENST00000368323	NM_006912.5	151	gCC/gTT																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310941	123310941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	58	363	0	ENST00000358487.5:c.487G>A	p.Glu163Lys	p.E163K	ENST00000358487	NM_000141.4	163	Gaa/Aaa																																																																														
DIS3	0	MSKCC	GRCh37	13	73349354	73349354	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	50	318	0	ENST00000377767.4:c.982C>T	p.Arg328Ter	p.R328*	ENST00000377767	NM_014953.3	328	Cga/Tga																																																																														
MGA	0	MSKCC	GRCh37	15	42042236	42042236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	92	494	0	ENST00000219905.7:c.6431G>A	p.Gly2144Glu	p.G2144E	ENST00000219905	NM_001164273.1	2144	gGa/gAa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678437	88678437	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	129	703	1	ENST00000360948.2:c.1099A>T	p.Lys367Ter	p.K367*	ENST00000360948	NM_001012338.2	367	Aag/Tag																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024885	31024885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	98	495	1	ENST00000375687.4:c.4370C>T	p.Ser1457Phe	p.S1457F	ENST00000375687	NM_015338.5	1457	tCc/tTc																																																																														
SRC	0	MSKCC	GRCh37	20	36028521	36028521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	80	619	0	ENST00000358208.4:c.863C>T	p.Thr288Ile	p.T288I	ENST00000358208		288	aCc/aTc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670486	134670487	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	81	532	2	ENST00000398015.3:c.397_398delinsTT	p.Pro133Phe	p.P133F	ENST00000398015	NM_004441.4	133	CCc/TTc																																																																														
EIF4E	0	MSKCC	GRCh37	4	99808247	99808247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	89	570	1	ENST00000280892.6:c.442C>T	p.Arg148Cys	p.R148C	ENST00000280892	NM_001130678.1	148	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	51	307	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	0	MSKCC	GRCh37	5	38962983	38962983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	49	207	0	ENST00000357387.3:c.1561C>T	p.Leu521Phe	p.L521F	ENST00000357387	NM_152756.3	521	Ctt/Ttt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32180679	32180680	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	98	671	2	ENST00000375023.3:c.2447_2448delinsAA	p.Arg816Lys	p.R816K	ENST00000375023	NM_004557.3	816	aGG/aAA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	126	427	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
BCOR	0	MSKCC	GRCh37	X	39933653	39933653	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200052076		P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	85	234	0	ENST00000378444.4:c.946C>T	p.Pro316Ser	p.P316S	ENST00000378444	NM_001123385.1	316	Ccc/Tcc																																																																														
GATA1	0	MSKCC	GRCh37	X	48652395	48652395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	95	365	0	ENST00000376670.3:c.1066G>C	p.Gly356Arg	p.G356R	ENST00000376670	NM_002049.3	356	Ggc/Cgc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53245372	53245372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	67	226	1	ENST00000375401.3:c.665C>T	p.Pro222Leu	p.P222L	ENST00000375401	NM_004187.3	222	cCc/cTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0028041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	160	476	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0028041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	91	268	0				ENST00000310581	NM_198253.2																																																																																
CDK4	0	MSKCC	GRCh37	12	58145437	58145437	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0028041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	88	420	0	ENST00000257904.6:c.64A>C	p.Lys22Gln	p.K22Q	ENST00000257904	NM_000075.3	22	Aag/Cag																																																																														
ELF3	0	MSKCC	GRCh37	1	201981870	201981870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	328	692	4	ENST00000359651.3:c.581C>T	p.Ser194Phe	p.S194F	ENST00000359651		194	tCt/tTt																																																																														
TP63	0	MSKCC	GRCh37	3	189526251	189526251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	155	584	0	ENST00000264731.3:c.515C>T	p.Pro172Leu	p.P172L	ENST00000264731	NM_003722.4	172	cCa/cTa																																																																														
HGF	0	MSKCC	GRCh37	7	81358967	81358967	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	140	493	0	ENST00000222390.5:c.994C>T	p.Gln332Ter	p.Q332*	ENST00000222390	NM_000601.4	332	Cag/Tag																																																																														
AGO2	0	MSKCC	GRCh37	8	141567331	141567331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	101	415	2	ENST00000220592.5:c.883C>T	p.Pro295Ser	p.P295S	ENST00000220592	NM_012154.3	295	Ccg/Tcg																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	161	689	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	75	408	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	75	408	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	170	514	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	145	523	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	82	377	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																														
RNF43	0	MSKCC	GRCh37	17	56436145	56436145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	56	643	0	ENST00000407977.2:c.992C>G	p.Ser331Cys	p.S331C	ENST00000407977		331	tCt/tGt																																																																														
PTEN	0	MSKCC	GRCh37	10	89685313	89685313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	114	382	0	ENST00000371953.3:c.208C>G	p.Leu70Val	p.L70V	ENST00000371953	NM_000314.4	70	Ctt/Gtt																																																																														
TSC2	0	MSKCC	GRCh37	16	2134245	2134245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	55	542	0	ENST00000219476.3:c.4022G>T	p.Ser1341Ile	p.S1341I	ENST00000219476	NM_000548.3	1341	aGc/aTc																																																																														
STAT5B	0	MSKCC	GRCh37	17	40353820	40353820	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	134	570	0	ENST00000293328.3:c.2300G>T	p.Arg767Leu	p.R767L	ENST00000293328	NM_012448.3	767	cGg/cTg																																																																														
STAT3	0	MSKCC	GRCh37	17	40489782	40489782	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	76	515	0	ENST00000264657.5:c.644G>C	p.Arg215Thr	p.R215T	ENST00000264657	NM_139276.2	215	aGa/aCa																																																																														
RNF43	0	MSKCC	GRCh37	17	56436052	56436052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	46	491	0	ENST00000407977.2:c.1085C>T	p.Ser362Phe	p.S362F	ENST00000407977		362	tCc/tTc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39537586	39537586	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	60	452	0	ENST00000262039.4:c.120A>T	p.Glu40Asp	p.E40D	ENST00000262039	NM_002647.2	40	gaA/gaT																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916843	178916843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	96	674	1	ENST00000263967.3:c.230C>T	p.Ala77Val	p.A77V	ENST00000263967	NM_006218.2	77	gCa/gTa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927475	178927476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	127	461	0	ENST00000263967.3:c.1241dup	p.Ala415CysfsTer2	p.A415Cfs*2	ENST00000263967	NM_006218.2	413	aag/aaGg																																																																														
TET2	0	MSKCC	GRCh37	4	106196930	106196930	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	102	288	1	ENST00000380013.4:c.5263G>T	p.Glu1755Ter	p.E1755*	ENST00000380013	NM_001127208.2	1755	Gaa/Taa																																																																														
NSD1	0	MSKCC	GRCh37	5	176637762	176637763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	152	693	0	ENST00000439151.2:c.2363dup	p.Ser789LysfsTer20	p.S789Kfs*20	ENST00000439151	NM_022455.4	788	cga/cGga																																																																														
E2F3	0	MSKCC	GRCh37	6	20490584	20490584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	124	618	0	ENST00000346618.3:c.1321G>A	p.Glu441Lys	p.E441K	ENST00000346618	NM_001949.4	441	Gag/Aag																																																																														
HGF	0	MSKCC	GRCh37	7	81358920	81358920	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0028051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	96	422	0	ENST00000222390.5:c.1040+1G>T		p.X347_splice	ENST00000222390	NM_000601.4	347																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0028052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	112	716	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	118	572	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	9	602	1	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																																																														
CDK8	0	MSKCC	GRCh37	13	26923216	26923216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0028052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	19	346	0	ENST00000381527.3:c.212G>C	p.Arg71Pro	p.R71P	ENST00000381527	NM_001260.1	71	cGa/cCa																																																																														
FLT1	0	MSKCC	GRCh37	13	28897066	28897066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	31	394	0	ENST00000282397.4:c.2814G>T	p.Met938Ile	p.M938I	ENST00000282397	NM_002019.4	938	atG/atT																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591291	67591294	+	frameshift_variant	Frame_Shift_Del	DEL	TGGT	TGGT	-			P-0028052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	32	501	0	ENST00000274335.5:c.1792_1795del	p.Leu598AlafsTer63	p.L598Afs*63	ENST00000274335		597	TGGTtg/tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0028053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	31	830	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
MST1	0	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0028055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	16	22	2	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																														
SPEN	0	MSKCC	GRCh37	1	16256717	16256720	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0028055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	344	591	0	ENST00000375759.3:c.3984_3987del	p.Val1330Ter	p.V1330*	ENST00000375759	NM_015001.2	1328	CTATct/ct																																																																														
PTEN	0	MSKCC	GRCh37	10	89692787	89692787	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0028055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	100	382	0	ENST00000371953.3:c.271G>T	p.Glu91Ter	p.E91*	ENST00000371953	NM_000314.4	91	Gaa/Taa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71940136	71940157	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTCCCAATGGGCTGAGCACCGT	CTCCCAATGGGCTGAGCACCGT	-			P-0028055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	30	666	0	ENST00000298229.2:c.524_545del	p.Pro175ArgfsTer5	p.P175Rfs*5	ENST00000298229	NM_001567.3	174	gCTCCCAATGGGCTGAGCACCGTc/gc																																																																														
TP53	0	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			34	644	782	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43769902	43769902	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	360	511	0	ENST00000382044.4:c.844G>T	p.Glu282Ter	p.E282*	ENST00000382044	NM_001141980.1	282	Gaa/Taa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81954842	81954842	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			32	490	657	1	ENST00000359376.3:c.2275T>A	p.Tyr759Asn	p.Y759N	ENST00000359376	NM_002661.3	759	Tat/Aat																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7983258	7983258	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0019424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			27	300	372	0	ENST00000319144.4:c.756G>C	p.Glu252Asp	p.E252D	ENST00000319144	NM_001139.2	252	gaG/gaC																																																																														
RPTOR	0	MSKCC	GRCh37	17	78882646	78882646	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	108	641	1	ENST00000306801.3:c.2437A>G	p.Arg813Gly	p.R813G	ENST00000306801	NM_020761.2	813	Aga/Gga																																																																														
PTPRS	0	MSKCC	GRCh37	19	5215323	5215323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019424-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			648	200	561	0	ENST00000357368.4:c.4295G>T	p.Arg1432Leu	p.R1432L	ENST00000357368	NM_002850.3	1432	cGt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	205	245	1	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	167	338	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	432	562	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385221	41385221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			914	151	456	2	ENST00000373198.4:c.740G>A	p.Arg247His	p.R247H	ENST00000373198	NM_133170.3	247	cGc/cAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943806	9943806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	115	339	0	ENST00000330684.3:c.1135G>A	p.Glu379Lys	p.E379K	ENST00000330684	NM_001134407.1	379	Gag/Aag																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	322	519	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81953214	81953214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	89	290	0	ENST00000359376.3:c.2180G>A	p.Arg727Gln	p.R727Q	ENST00000359376	NM_002661.3	727	cGa/cAa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016634	12016634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			215	162	304	1	ENST00000353533.5:c.770C>T	p.Ser257Phe	p.S257F	ENST00000353533	NM_003010.3	257	tCt/tTt																																																																														
GATA1	0	MSKCC	GRCh37	X	48650377	48650377	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			831	232	631	0	ENST00000376670.3:c.347C>G	p.Ser116Cys	p.S116C	ENST00000376670	NM_002049.3	116	tCt/tGt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37864618	37864618	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			762	200	576	0	ENST00000269571.5:c.270A>T	p.Gln90His	p.Q90H	ENST00000269571		90	caA/caT																																																																														
U2AF1	0	MSKCC	GRCh37	21	44515621	44515621	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			683	161	585	0	ENST00000291552.4:c.275A>C	p.Lys92Thr	p.K92T	ENST00000291552	NM_006758.2	92	aAg/aCg																																																																														
MST1R	0	MSKCC	GRCh37	3	49933824	49933824	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			749	180	552	0	ENST00000296474.3:c.2453T>C	p.Leu818Pro	p.L818P	ENST00000296474	NM_002447.2	818	cTt/cCt																																																																														
RAD50	0	MSKCC	GRCh37	5	131931335	131931335	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	117	407	0	ENST00000265335.6:c.2040T>G	p.Cys680Trp	p.C680W	ENST00000265335		680	tgT/tgG																																																																														
ROS1	0	MSKCC	GRCh37	6	117642513	117642513	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			891	112	579	0	ENST00000368508.3:c.5686G>T	p.Val1896Leu	p.V1896L	ENST00000368508	NM_002944.2	1896	Gtg/Ttg																																																																														
CARD11	0	MSKCC	GRCh37	7	2987307	2987307	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			791	155	478	0	ENST00000396946.4:c.122A>C	p.Lys41Thr	p.K41T	ENST00000396946	NM_032415.4	41	aAg/aCg																																																																														
EGFR	0	MSKCC	GRCh37	7	55227918	55227918	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			573	352	466	0	ENST00000275493.2:c.1385T>G	p.Ile462Arg	p.I462R	ENST00000275493	NM_005228.3	462	aTa/aGa																																																																														
JAK2	0	MSKCC	GRCh37	9	5090898	5090898	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			137	23	195	0	ENST00000381652.3:c.3046A>C	p.Ser1016Arg	p.S1016R	ENST00000381652	NM_004972.3	1016	Agt/Cgt																																																																														
STAG2	0	MSKCC	GRCh37	X	123217345	123217345	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019711-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	99	519	0	ENST00000218089.9:c.2999T>G	p.Leu1000Arg	p.L1000R	ENST00000218089	NM_001042749.1	1000	cTt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	124	608	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111475	8111476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	228	596	1	ENST00000346208.3:c.962dupA	p.Thr322AspfsTer30	p.T322Dfs*30	ENST00000346208		321	cag/cAag																																																																														
PARP1	0	MSKCC	GRCh37	1	226564916	226564916	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	90	449	0	ENST00000366794.5:c.1834G>C	p.Glu612Gln	p.E612Q	ENST00000366794	NM_001618.3	612	Gag/Cag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061125	38061194	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAG	CTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAG	-			P-0026319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	234	189	0	ENST00000250448.2:c.795_864del	p.Phe266AlafsTer32	p.F266Afs*32	ENST00000250448	NM_004496.3	265	cgCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAG/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	151	417	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	126	627	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600398	10600398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	82	715	0	ENST00000171111.5:c.1457C>T	p.Ser486Leu	p.S486L	ENST00000171111	NM_203500.1	486	tCa/tTa																																																																														
PLK2	0	MSKCC	GRCh37	5	57755653	57755653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	69	665	0	ENST00000274289.3:c.134C>T	p.Pro45Leu	p.P45L	ENST00000274289	NM_006622.3	45	cCt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	76	568	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
RET	0	MSKCC	GRCh37	10	43597964	43597964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	64	671	0	ENST00000355710.3:c.512G>T	p.Arg171Met	p.R171M	ENST00000355710	NM_020975.4	171	aGg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	70	489	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7574004	7574005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	149	774	0	ENST00000269305.4:c.1022dup	p.Arg342ProfsTer5	p.R342Pfs*5	ENST00000269305	NM_001126112.2	341	ttc/ttTc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112431	115112431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	289	516	1	ENST00000257566.3:c.1309C>T	p.His437Tyr	p.H437Y	ENST00000257566	NM_016569.3	437	Cat/Tat																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149502663	149502663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	185	471	3	ENST00000261799.4:c.2125C>T	p.Arg709Cys	p.R709C	ENST00000261799	NM_002609.3	709	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	80	426	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CDC73	0	MSKCC	GRCh37	1	193119459	193119459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	73	357	0	ENST00000367435.3:c.854C>G	p.Pro285Arg	p.P285R	ENST00000367435	NM_024529.4	285	cCt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0027953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	113	534	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47125222	47125222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	58	309	0	ENST00000409792.3:c.6048G>T	p.Trp2016Cys	p.W2016C	ENST00000409792	NM_014159.6	2016	tgG/tgT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057733	27057733	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	167	718	1	ENST00000324856.7:c.1441C>T	p.Gln481Ter	p.Q481*	ENST00000324856	NM_006015.4	481	Cag/Tag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111494	8111494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	156	546	0	ENST00000346208.3:c.980T>C	p.Leu327Pro	p.L327P	ENST00000346208		327	cTc/cCc																																																																														
SETD2	0	MSKCC	GRCh37	3	47143026	47143027	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTTGTCC			P-0027953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	60	524	0	ENST00000409792.3:c.4930_4936dup	p.Leu1646ArgfsTer22	p.L1646Rfs*22	ENST00000409792	NM_014159.6	1646	ctg/cGGACAACtg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185184634	185184713	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGTATCCTGGGACCTACAAACGACACCCTGTTCGTCCTATCATCCATCCCAATGCCATGGAGAAACTCATGAAAAGG	AGAAGTATCCTGGGACCTACAAACGACACCCTGTTCGTCCTATCATCCATCCCAATGCCATGGAGAAACTCATGAAAAGG	-			P-0027953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	60	356	0	ENST00000265026.3:c.1527_1606del	p.Lys510ArgfsTer43	p.K510Rfs*43	ENST00000265026	NM_004721.4	509	aAGAAGTATCCTGGGACCTACAAACGACACCCTGTTCGTCCTATCATCCATCCCAATGCCATGGAGAAACTCATGAAAAGG/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0027954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	61	706	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577070	7577070	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	549	623	0	ENST00000269305.4:c.868delC	p.Arg290AlafsTer55	p.R290Afs*55	ENST00000269305	NM_001126112.2	290	Cgc/gc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212495296	212495296	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	99	473	0	ENST00000342788.4:c.1970T>A	p.Val657Glu	p.V657E	ENST00000342788	NM_005235.2	657	gTa/gAa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376455	118376455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	127	388	0	ENST00000534358.1:c.9848G>A	p.Arg3283Gln	p.R3283Q	ENST00000534358	NM_005933.3	3283	cGa/cAa																																																																														
SOX17	0	MSKCC	GRCh37	8	55371914	55371914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	97	361	0	ENST00000297316.4:c.604C>T	p.His202Tyr	p.H202Y	ENST00000297316	NM_022454.3	202	Cac/Tac																																																																														
SPEN	0	MSKCC	GRCh37	1	16255058	16255058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	96	374	0	ENST00000375759.3:c.2323G>A	p.Glu775Lys	p.E775K	ENST00000375759	NM_015001.2	775	Gag/Aag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56486805	56486805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	176	509	1	ENST00000267101.3:c.1219C>A	p.His407Asn	p.H407N	ENST00000267101	NM_001982.3	407	Cac/Aac																																																																														
STAT3	0	MSKCC	GRCh37	17	40481426	40481454	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACATCACAATTGGCTCGGCCCCCATTCCC	ACATCACAATTGGCTCGGCCCCCATTCCC	-			P-0027979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	106	499	0	ENST00000264657.5:c.1255_1281+2del		p.X419_splice	ENST00000264657	NM_139276.2	419																																																																															
DUSP4	0	MSKCC	GRCh37	8	29194904	29194904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	377	680	3	ENST00000240100.2:c.824G>A	p.Arg275His	p.R275H	ENST00000240100	NM_001394.6	275	cGc/cAc																																																																														
PREX2	0	MSKCC	GRCh37	8	68942889	68942889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027979-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	131	519	0	ENST00000288368.4:c.701G>T	p.Trp234Leu	p.W234L	ENST00000288368	NM_024870.2	234	tGg/tTg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	84	487	3	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	174	627	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
STK11	0	MSKCC	GRCh37	19	1221987	1221987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	207	642	3	ENST00000326873.7:c.902G>A	p.Arg301Gln	p.R301Q	ENST00000326873	NM_000455.4	301	cGg/cAg																																																																														
ALK	0	MSKCC	GRCh37	2	29446317	29446317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	86	703	1	ENST00000389048.3:c.3250C>T	p.Arg1084Cys	p.R1084C	ENST00000389048	NM_004304.4	1084	Cgc/Tgc																																																																														
APC	0	MSKCC	GRCh37	5	112154858	112154859	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0027984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	93	547	0	ENST00000257430.4:c.1130_1131del	p.Lys377ArgfsTer19	p.K377Rfs*19	ENST00000257430	NM_000038.5	377	AAa/a																																																																														
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	157	367	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																														
APC	0	MSKCC	GRCh37	5	112175621	112175621	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	83	355	0	ENST00000257430.4:c.4330del	p.Gln1444LysfsTer29	p.Q1444Kfs*29	ENST00000257430	NM_000038.5	1444	Caa/aa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32168752	32168752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	68	778	2	ENST00000375023.3:c.4171C>T	p.Arg1391Cys	p.R1391C	ENST00000375023	NM_004557.3	1391	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0027985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	72	347	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
CDH1	0	MSKCC	GRCh37	16	68842414	68842414	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	96	579	0	ENST00000261769.5:c.476delC	p.Pro159LeufsTer56	p.P159Lfs*56	ENST00000261769	NM_004360.3	159	Cct/ct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	29	612	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	36	562	3	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	13	409	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518190	8518190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	19	323	0	ENST00000356435.5:c.1201C>T	p.Arg401Trp	p.R401W	ENST00000356435		401	Cgg/Tgg																																																																														
PARP1	0	MSKCC	GRCh37	1	226574031	226574031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201975538		P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	14	327	0	ENST00000366794.5:c.830C>T	p.Ser277Leu	p.S277L	ENST00000366794	NM_001618.3	277	tCg/tTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094384	27094384	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	23	470	0	ENST00000324856.7:c.3092C>G	p.Thr1031Ser	p.T1031S	ENST00000324856	NM_006015.4	1031	aCt/aGt																																																																														
IRS2	0	MSKCC	GRCh37	13	110434545	110434545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	21	580	0	ENST00000375856.3:c.3856C>T	p.Arg1286Trp	p.R1286W	ENST00000375856	NM_003749.2	1286	Cgg/Tgg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5243987	5243987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	24	593	0	ENST00000357368.4:c.1495G>A	p.Val499Met	p.V499M	ENST00000357368	NM_002850.3	499	Gtg/Atg																																																																														
UPF1	0	MSKCC	GRCh37	19	18971667	18971667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	26	645	0	ENST00000262803.5:c.2333C>T	p.Thr778Met	p.T778M	ENST00000262803	NM_002911.3	778	aCg/aTg																																																																														
SMO	0	MSKCC	GRCh37	7	128846425	128846425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	22	402	2	ENST00000249373.3:c.1261C>T	p.Arg421Ter	p.R421*	ENST00000249373	NM_005631.4	421	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	36	479	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TBX3	0	MSKCC	GRCh37	12	115117377	115117378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0027990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	52	414	0	ENST00000257566.3:c.796_797insAA	p.Ser266LysfsTer17	p.S266Kfs*17	ENST00000257566	NM_016569.3	266	agt/aAAgt																																																																														
CBFB	0	MSKCC	GRCh37	16	67070557	67070557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	24	223	0	ENST00000412916.2:c.181G>A	p.Gly61Arg	p.G61R	ENST00000412916		61	Gga/Aga																																																																														
CDH1	0	MSKCC	GRCh37	16	68844182	68844182	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	87	598	0	ENST00000261769.5:c.770A>C	p.Asp257Ala	p.D257A	ENST00000261769	NM_004360.3	257	gAc/gCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	100	308	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399937	139399937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	231	872	0	ENST00000277541.6:c.4411G>A	p.Ala1471Thr	p.A1471T	ENST00000277541	NM_017617.3	1471	Gcg/Acg																																																																														
GATA3	0	MSKCC	GRCh37	10	8111446	8111447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0027994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	163	508	0	ENST00000346208.3:c.936_937dup	p.Ala313GlufsTer43	p.A313Efs*43	ENST00000346208		311	agg/agGAg																																																																														
CBFB	0	MSKCC	GRCh37	16	67100693	67100693	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	144	470	1	ENST00000412916.2:c.391C>T	p.Arg131Ter	p.R131*	ENST00000412916		131	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	182	545	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0027995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	139	493	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
PGR	0	MSKCC	GRCh37	11	100998739	100998739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	82	604	0	ENST00000325455.5:c.1063G>T	p.Val355Leu	p.V355L	ENST00000325455	NM_001202474.3	355	Gta/Tta																																																																														
DICER1	0	MSKCC	GRCh37	14	95595913	95595913	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	98	499	0	ENST00000343455.3:c.630A>T	p.Leu210Phe	p.L210F	ENST00000343455	NM_177438.2	210	ttA/ttT																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259570	89259570	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	62	327	1	ENST00000336596.2:c.714T>A	p.Asp238Glu	p.D238E	ENST00000336596	NM_005233.5	238	gaT/gaA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0027996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	128	508	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
SMO	0	MSKCC	GRCh37	7	128852243	128852243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149170801		P-0027996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	44	691	0	ENST00000249373.3:c.2315G>A	p.Arg772His	p.R772H	ENST00000249373	NM_005631.4	772	cGc/cAc																																																																														
DICER1	0	MSKCC	GRCh37	14	95593018	95593018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	101	498	0	ENST00000343455.3:c.802G>A	p.Glu268Lys	p.E268K	ENST00000343455	NM_177438.2	268	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	577	532	1	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																														
TET1	0	MSKCC	GRCh37	10	70450898	70450898	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	169	435	0	ENST00000373644.4:c.5738T>A	p.Leu1913Gln	p.L1913Q	ENST00000373644	NM_030625.2	1913	cTg/cAg																																																																														
TBX3	0	MSKCC	GRCh37	12	115120845	115120845	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	130	439	0	ENST00000257566.3:c.161T>A	p.Leu54His	p.L54H	ENST00000257566	NM_016569.3	54	cTc/cAc																																																																														
UPF1	0	MSKCC	GRCh37	19	18965755	18965755	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	166	694	0	ENST00000262803.5:c.1333C>G	p.Leu445Val	p.L445V	ENST00000262803	NM_002911.3	445	Ctg/Gtg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636701	8636701	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	57	169	0	ENST00000356435.5:c.208G>A	p.Glu70Lys	p.E70K	ENST00000356435		70	Gag/Aag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061227	38061235	+	inframe_deletion	In_Frame_Del	DEL	GAACATGTT	GAACATGTT	-			P-0028000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	39	562	0	ENST00000250448.2:c.754_762del	p.Asn252_Phe254del	p.N252_F254del	ENST00000250448	NM_004496.3	252	AACATGTTC/-																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527485	157527485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	57	644	0	ENST00000346085.5:c.5210G>A	p.Cys1737Tyr	p.C1737Y	ENST00000346085	NM_020732.3	1737	tGt/tAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	469	648	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64135691	64135691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151034403		P-0028009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	139	661	1	ENST00000334205.4:c.1159C>T	p.Arg387Trp	p.R387W	ENST00000334205	NM_003942.2	387	Cgg/Tgg																																																																														
ETV6	0	MSKCC	GRCh37	12	12022526	12022526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111871763		P-0028009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	47	597	2	ENST00000396373.4:c.632G>A	p.Arg211His	p.R211H	ENST00000396373	NM_001987.4	211	cGc/cAc																																																																														
KIT	0	MSKCC	GRCh37	4	55595547	55595547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0028009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	80	435	0	ENST00000288135.5:c.2037G>T	p.Leu679Phe	p.L679F	ENST00000288135	NM_000222.2	679	ttG/ttT																																																																														
HGF	0	MSKCC	GRCh37	7	81334993	81334993	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0028009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	86	524	0	ENST00000222390.5:c.1834T>A	p.Cys612Ser	p.C612S	ENST00000222390	NM_000601.4	612	Tgc/Agc																																																																														
HGF	0	MSKCC	GRCh37	7	81392077	81392077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	82	348	3	ENST00000222390.5:c.200C>T	p.Ala67Val	p.A67V	ENST00000222390	NM_000601.4	67	gCa/gTa																																																																														
TSC1	0	MSKCC	GRCh37	9	135781391	135781391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0028009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	179	544	0	ENST00000298552.3:c.1574G>T	p.Ser525Ile	p.S525I	ENST00000298552	NM_001162426.1	525	aGt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0028012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	241	415	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0028012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	62	404	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
RET	0	MSKCC	GRCh37	10	43620336	43620336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0028012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	69	359	0	ENST00000355710.3:c.2945G>A	p.Arg982His	p.R982H	ENST00000355710	NM_020975.4	982	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	391	606	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0028015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	433	440	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
AXIN1	0	MSKCC	GRCh37	16	347756	347756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	236	788	2	ENST00000262320.3:c.1750G>A	p.Ala584Thr	p.A584T	ENST00000262320	NM_003502.3	584	Gct/Act																																																																														
PGR	0	MSKCC	GRCh37	11	100962553	100962553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	381	516	0	ENST00000325455.5:c.1844G>A	p.Arg615His	p.R615H	ENST00000325455	NM_001202474.3	615	cGc/cAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097802	27097802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0028015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	121	399	0	ENST00000324856.7:c.3391C>T	p.Gln1131Ter	p.Q1131*	ENST00000324856	NM_006015.4	1131	Cag/Tag																																																																														
BRAF	0	MSKCC	GRCh37	7	140487359	140487359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0028015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	231	694	0	ENST00000288602.6:c.1166G>A	p.Arg389His	p.R389H	ENST00000288602	NM_004333.4	389	cGt/cAt																																																																														
CARD11	0	MSKCC	GRCh37	7	2979480	2979480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0028020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	219	547	0	ENST00000396946.4:c.767A>G	p.Asp256Gly	p.D256G	ENST00000396946	NM_032415.4	256	gAc/gGc																																																																														
RET	0	MSKCC	GRCh37	10	43601927	43601927	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0028020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	289	716	1	ENST00000355710.3:c.971G>A	p.Trp324Ter	p.W324*	ENST00000355710	NM_020975.4	324	tGg/tAg																																																																														
TP53	0	MSKCC	GRCh37	17	7579359	7579360	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0028020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	268	669	0	ENST00000269305.4:c.326_327dupTC	p.Arg110SerfsTer14	p.R110Sfs*14	ENST00000269305	NM_001126112.2	109	-/TC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004918-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	552	570	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
GATA3	0	MSKCC	GRCh37	10	8100304	8100304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004918-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			725	373	815	2	ENST00000346208.3:c.278C>T	p.Ser93Phe	p.S93F	ENST00000346208		93	tCc/tTc																																																																														
SDHB	0	MSKCC	GRCh37	1	17359566	17359566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004918-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			768	327	741	0	ENST00000375499.3:c.275C>T	p.Ser92Leu	p.S92L	ENST00000375499	NM_003000.2	92	tCa/tTa																																																																														
TBX3	0	MSKCC	GRCh37	12	115117443	115117444	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AGTTCATATAT			P-0004918-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			626	255	561	0	ENST00000257566.3:c.730_731insATATATGAACT	p.Ser244TyrfsTer3	p.S244Yfs*3	ENST00000257566	NM_016569.3	244	tcc/tATATATGAACTcc																																																																														
TP53	0	MSKCC	GRCh37	17	7579348	7579350	+	missense_variant	Missense_Mutation	ONP	GAA	GAA	AGG			P-0004918-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	330	828	1	ENST00000269305.4:c.337_339delinsCCT	p.Phe113Pro	p.F113P	ENST00000269305	NM_001126112.2	113	TTC/CCT																																																																														
BLM	0	MSKCC	GRCh37	15	91308592	91308592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004918-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			769	312	718	0	ENST00000355112.3:c.2141C>T	p.Ser714Phe	p.S714F	ENST00000355112	NM_000057.2	714	tCt/tTt																																																																														
MSH3	0	MSKCC	GRCh37	5	79952253	79952253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004918-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	272	613	0	ENST00000265081.6:c.261G>C	p.Lys87Asn	p.K87N	ENST00000265081	NM_002439.4	87	aaG/aaC																																																																														
FLT4	0	MSKCC	GRCh37	5	180047674	180047674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004918-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			813	408	787	0	ENST00000261937.6:c.2341G>A	p.Gly781Ser	p.G781S	ENST00000261937	NM_182925.4	781	Ggt/Agt																																																																														
SHOC2	0	MSKCC	GRCh37	10	112769553	112769553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	158	561	0	ENST00000369452.4:c.1505G>T	p.Gly502Val	p.G502V	ENST00000369452	NM_007373.3	502	gGa/gTa																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	102	456	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	189	398	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
STK11	0	MSKCC	GRCh37	19	1220718	1220718	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	127	464	0	ENST00000326873.7:c.734+2T>A		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																															
PTPRS	0	MSKCC	GRCh37	19	5223012	5223012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	155	530	0	ENST00000357368.4:c.2791C>T	p.His931Tyr	p.H931Y	ENST00000357368	NM_002850.3	931	Cac/Tac																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602907	10602907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	206	679	1	ENST00000171111.5:c.671C>T	p.Ser224Phe	p.S224F	ENST00000171111	NM_203500.1	224	tCc/tTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11121082	11121082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	146	505	0	ENST00000344626.4:c.2149G>T	p.Glu717Ter	p.E717*	ENST00000344626	NM_003072.3	717	Gaa/Taa																																																																														
PDCD1	0	MSKCC	GRCh37	2	242795049	242795049	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	208	746	0	ENST00000334409.5:c.160T>A	p.Cys54Ser	p.C54S	ENST00000334409	NM_005018.2	54	Tgc/Agc																																																																														
ERG	0	MSKCC	GRCh37	21	39755492	39755492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	105	360	0	ENST00000288319.7:c.1273C>T	p.Pro425Ser	p.P425S	ENST00000288319	NM_182918.3	425	Cca/Tca																																																																														
RBM10	0	MSKCC	GRCh37	X	47039611	47039611	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0027540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	115	190	0	ENST00000329236.7:c.829G>T	p.Glu277Ter	p.E277*	ENST00000329236	NM_001204466.1	277	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	38	588	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	125	522	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	148	385	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	218	685	0	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9770578	9770578	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	125	660	0	ENST00000377346.4:c.66del	p.Asp23ThrfsTer10	p.D23Tfs*10	ENST00000377346	NM_005026.3	22	gTt/gt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0027866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	29	729	2	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	43	248	0				ENST00000310581	NM_198253.2																																																																																
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	117	756	0	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566709	212566709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	56	396	0	ENST00000342788.4:c.1472G>A	p.Arg491Lys	p.R491K	ENST00000342788	NM_005235.2	491	aGa/aAa																																																																														
CBL	0	MSKCC	GRCh37	11	119169209	119169209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	71	618	0	ENST00000264033.4:c.2393C>T	p.Ser798Phe	p.S798F	ENST00000264033	NM_005188.3	798	tCc/tTc																																																																														
PREX2	0	MSKCC	GRCh37	8	69046378	69046378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	85	650	0	ENST00000288368.4:c.3851C>T	p.Ala1284Val	p.A1284V	ENST00000288368	NM_024870.2	1284	gCg/gTg																																																																														
FLT1	0	MSKCC	GRCh37	13	29004206	29004206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	60	484	0	ENST00000282397.4:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000282397	NM_002019.4	363	Ccc/Tcc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486154	8486154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	76	528	0	ENST00000356435.5:c.2663G>A	p.Gly888Glu	p.G888E	ENST00000356435		888	gGa/gAa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420327	88420327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	77	544	0	ENST00000360948.2:c.2359C>T	p.Arg787Cys	p.R787C	ENST00000360948	NM_001012338.2	787	Cgt/Tgt																																																																														
SPEN	0	MSKCC	GRCh37	1	16262589	16262589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	76	506	0	ENST00000375759.3:c.9854C>T	p.Pro3285Leu	p.P3285L	ENST00000375759	NM_015001.2	3285	cCt/cTt																																																																														
CDC42	0	MSKCC	GRCh37	1	22412940	22412940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	24	204	1	ENST00000344548.3:c.187G>A	p.Asp63Asn	p.D63N	ENST00000344548	NM_001039802.1	63	Gat/Aat																																																																														
POLE	0	MSKCC	GRCh37	12	133235997	133235998	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	94	668	1	ENST00000320574.5:c.3158_3159delinsTT	p.Ser1053Phe	p.S1053F	ENST00000320574	NM_006231.2	1053	tCC/tTT																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913101	32913101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	112	646	0	ENST00000380152.3:c.4609G>A	p.Glu1537Lys	p.E1537K	ENST00000380152		1537	Gaa/Aaa																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43701895	43701895	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	79	429	1	ENST00000382044.4:c.5350C>T	p.Gln1784Ter	p.Q1784*	ENST00000382044	NM_001141980.1	1784	Cag/Tag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857515	9857515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	52	474	1	ENST00000330684.3:c.3886G>A	p.Val1296Ile	p.V1296I	ENST00000330684	NM_001134407.1	1296	Gtc/Atc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58678237	58678237	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	116	749	2	ENST00000305921.3:c.462G>A	p.Trp154Ter	p.W154*	ENST00000305921	NM_003620.3	154	tgG/tgA																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533512	63533512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	86	722	1	ENST00000307078.5:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000307078	NM_004655.3	548	Gag/Aag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593478	48593479	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	165	480	0	ENST00000342988.3:c.1231_1232del	p.Ser411LeufsTer17	p.S411Lfs*17	ENST00000342988	NM_005359.5	410	cAG/c																																																																														
JAK3	0	MSKCC	GRCh37	19	17955042	17955042	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	97	817	0	ENST00000458235.1:c.184+1G>A		p.X62_splice	ENST00000458235	NM_000215.3	62																																																																															
UPF1	0	MSKCC	GRCh37	19	18966852	18966853	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	94	817	2	ENST00000262803.5:c.1663_1664delinsTT	p.Pro555Leu	p.P555L	ENST00000262803	NM_002911.3	555	CCg/TTg																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73110202	73110202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	140	597	0	ENST00000356692.5:c.410C>T	p.Pro137Leu	p.P137L	ENST00000356692		137	cCt/cTt																																																																														
GATA2	0	MSKCC	GRCh37	3	128205662	128205663	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	71	496	2	ENST00000341105.2:c.212_213delinsTT	p.Ser71Phe	p.S71F	ENST00000341105	NM_032638.4	71	tCC/tTT																																																																														
PTEN	0	MSKCC	GRCh37	10	89720825	89720825	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	265	278	0	ENST00000371953.3:c.976G>C	p.Asp326His	p.D326H	ENST00000371953	NM_000314.4	326	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0027868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	295	645	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
PARP1	0	MSKCC	GRCh37	1	226555287	226555287	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	400	573	0	ENST00000366794.5:c.2300A>C	p.Asn767Thr	p.N767T	ENST00000366794	NM_001618.3	767	aAc/aCc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431019	49431019	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	386	680	0	ENST00000301067.7:c.10120C>T	p.Gln3374Ter	p.Q3374*	ENST00000301067	NM_003482.3	3374	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433280	49433280	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	436	593	0	ENST00000301067.7:c.8167G>C	p.Glu2723Gln	p.E2723Q	ENST00000301067	NM_003482.3	2723	Gag/Cag																																																																														
CDK8	0	MSKCC	GRCh37	13	26970455	26970455	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	83	488	0	ENST00000381527.3:c.824A>T	p.Glu275Val	p.E275V	ENST00000381527	NM_001260.1	275	gAa/gTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943800	9943800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	108	385	0	ENST00000330684.3:c.1141C>T	p.His381Tyr	p.H381Y	ENST00000330684	NM_001134407.1	381	Cat/Tat																																																																														
NUP93	0	MSKCC	GRCh37	16	56865902	56865902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	200	440	0	ENST00000308159.5:c.1234G>A	p.Asp412Asn	p.D412N	ENST00000308159	NM_014669.4	412	Gat/Aat																																																																														
NF1	0	MSKCC	GRCh37	17	29560051	29560051	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	230	367	0	ENST00000358273.4:c.3528del	p.Ala1177LeufsTer7	p.A1177Lfs*7	ENST00000358273	NM_001042492.2	1176	agA/ag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139393377	139393377	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	699	691	1	ENST00000277541.6:c.6154del	p.Ala2052LeufsTer59	p.A2052Lfs*59	ENST00000277541	NM_017617.3	2052	Gct/ct																																																																														
ATRX	0	MSKCC	GRCh37	X	76938316	76938316	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	169	569	0	ENST00000373344.5:c.2432A>T	p.Gln811Leu	p.Q811L	ENST00000373344	NM_000489.3	811	cAg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	471	983	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
BCOR	0	MSKCC	GRCh37	X	39921487	39921487	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	139	452	1	ENST00000378444.4:c.4333C>T	p.Gln1445Ter	p.Q1445*	ENST00000378444	NM_001123385.1	1445	Cag/Tag																																																																														
IL7R	0	MSKCC	GRCh37	5	35873713	35873713	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	479	643	0	ENST00000303115.3:c.669T>G	p.Ser223Arg	p.S223R	ENST00000303115	NM_002185.3	223	agT/agG																																																																														
PTPRD	0	MSKCC	GRCh37	9	8492862	8492862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	159	684	1	ENST00000356435.5:c.2467G>A	p.Val823Ile	p.V823I	ENST00000356435		823	Gtt/Att																																																																														
KDM5C	0	MSKCC	GRCh37	X	53247094	53247094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	409	434	0	ENST00000375401.3:c.406C>G	p.Arg136Gly	p.R136G	ENST00000375401	NM_004187.3	136	Cgg/Ggg																																																																														
RB1	0	MSKCC	GRCh37	13	48923148	48923148	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0027871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	40	398	0	ENST00000267163.4:c.596T>G	p.Leu199Ter	p.L199*	ENST00000267163	NM_000321.2	199	tTa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7579392	7579392	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	28	737	0	ENST00000269305.4:c.295del	p.Ser99ProfsTer24	p.S99Pfs*24	ENST00000269305	NM_001126112.2	99	Tcc/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0027874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	338	614	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
PTEN	0	MSKCC	GRCh37	10	89685304	89685310	+	frameshift_variant	Frame_Shift_Del	DEL	ATATACA	ATATACA	-			P-0027874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	223	479	4	ENST00000371953.3:c.201_207del	p.Tyr68PhefsTer29	p.Y68Ffs*29	ENST00000371953	NM_000314.4	67	ATATACAat/at																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743858	40743858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	184	584	5	ENST00000373198.4:c.3137G>A	p.Arg1046His	p.R1046H	ENST00000373198	NM_133170.3	1046	cGc/cAc																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	388	699	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
PTEN	0	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	213	450	0	ENST00000371953.3:c.494G>A	p.Gly165Glu	p.G165E	ENST00000371953	NM_000314.4	165	gGa/gAa																																																																														
INSR	0	MSKCC	GRCh37	19	7141705	7141705	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76077021		P-0027875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	434	705	0	ENST00000302850.5:c.2665C>T	p.Arg889Trp	p.R889W	ENST00000302850	NM_000208.2	889	Cgg/Tgg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937187	36937187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	419	715	0	ENST00000361632.4:c.1132T>C	p.Ser378Pro	p.S378P	ENST00000361632		378	Tca/Cca																																																																														
GATA3	0	MSKCC	GRCh37	10	8115982	8115982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	137	352	0	ENST00000346208.3:c.1328G>T	p.Gly443Val	p.G443V	ENST00000346208		443	gGt/gTt																																																																														
INPPL1	0	MSKCC	GRCh37	11	71941013	71941028	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCAGCCATCCACAC	CCGCAGCCATCCACAC	-			P-0027875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	336	729	2	ENST00000298229.2:c.889_904del	p.Pro297ValfsTer13	p.P297Vfs*13	ENST00000298229	NM_001567.3	297	CCGCAGCCATCCACACgt/gt																																																																														
POLE	0	MSKCC	GRCh37	12	133235900	133235901	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0027875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	249	491	1	ENST00000320574.5:c.3255_3256delinsAA	p.Gly1086Ser	p.G1086S	ENST00000320574	NM_006231.2	1085	gaGGgc/gaAAgc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098025	178098025	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	346	480	0	ENST00000397062.3:c.355T>C	p.Cys119Arg	p.C119R	ENST00000397062	NM_006164.4	119	Tgc/Cgc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794935	242794936	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0027875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	175	670	0	ENST00000334409.5:c.273_274delinsAA	p.Asp92Asn	p.D92N	ENST00000334409	NM_005018.2	91	caGGac/caAAac																																																																														
FGFR1	0	MSKCC	GRCh37	8	38274932	38274932	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	421	711	0	ENST00000425967.3:c.1648G>A	p.Asp550Asn	p.D550N	ENST00000425967	NM_001174067.1	550	Gac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	48	364	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
SPEN	0	MSKCC	GRCh37	1	16256528	16256528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	97	622	1	ENST00000375759.3:c.3793C>T	p.Arg1265Ter	p.R1265*	ENST00000375759	NM_015001.2	1265	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67645884	67645884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	65	552	0	ENST00000264010.4:c.812G>C	p.Cys271Ser	p.C271S	ENST00000264010	NM_006565.3	271	tGc/tCc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198268419	198268419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	49	518	0	ENST00000335508.6:c.1609C>T	p.Pro537Ser	p.P537S	ENST00000335508	NM_012433.2	537	Cct/Tct																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41275654	41275666	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGCCCTTTGTC	CTTGCCCTTTGTC	-			P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	35	446	0	ENST00000349496.5:c.1550_1562del	p.Leu517ProfsTer16	p.L517Pfs*16	ENST00000349496	NM_001904.3	517	CTTGCCCTTTGTCcc/cc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168721	56168728	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCCTT	GCAGCCTT	-			P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	52	468	0	ENST00000399503.3:c.1575_1582del	p.Gln525HisfsTer13	p.Q525Hfs*13	ENST00000399503	NM_005921.1	525	caGCAGCCTTtg/catg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178338	56178338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	47	346	0	ENST00000399503.3:c.3311del	p.Ala1104ValfsTer13	p.A1104Vfs*13	ENST00000399503	NM_005921.1	1104	gCt/gt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	288	610	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151946975	151946978	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0027879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	208	534	0	ENST00000262189.6:c.1796_1799delATAG	p.Asp599ValfsTer12	p.D599Vfs*12	ENST00000262189	NM_170606.2	599	gATAGt/gt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	194	662	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	229	789	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
FLT4	0	MSKCC	GRCh37	5	180043381	180043381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	99	650	3	ENST00000261937.6:c.3205G>A	p.Val1069Ile	p.V1069I	ENST00000261937	NM_182925.4	1069	Gtc/Atc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	213	548	0	ENST00000371953.3:c.389G>C	p.Arg130Pro	p.R130P	ENST00000371953	NM_000314.4	130	cGa/cCa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589589	67589591	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0027884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	188	436	0	ENST00000274335.5:c.1353_1355del	p.Glu451_Tyr452delinsAsp	p.E451_Y452delinsD	ENST00000274335		451	gAATat/gat																																																																														
TBX3	0	MSKCC	GRCh37	12	115114169	115114169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	348	709	2	ENST00000257566.3:c.1048G>A	p.Ala350Thr	p.A350T	ENST00000257566	NM_016569.3	350	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0027886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	1235	704	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																														
MPL	0	MSKCC	GRCh37	1	43818268	43818268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	573	644	0	ENST00000372470.3:c.1733C>G	p.Thr578Ser	p.T578S	ENST00000372470	NM_005373.2	578	aCt/aGt																																																																														
LATS2	0	MSKCC	GRCh37	13	21619952	21619952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	247	631	0	ENST00000382592.4:c.214C>A	p.Pro72Thr	p.P72T	ENST00000382592	NM_014572.2	72	Cct/Act																																																																														
KIT	0	MSKCC	GRCh37	4	55592117	55592117	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	235	576	0	ENST00000288135.5:c.1441A>T	p.Ser481Cys	p.S481C	ENST00000288135	NM_000222.2	481	Agt/Tgt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139397617	139397646	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATGGGGCCACACTTACTCTGCACGGCCTC	GATGGGGCCACACTTACTCTGCACGGCCTC	-			P-0027886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	206	588	0	ENST00000277541.6:c.5155_5167+17del		p.X1719_splice	ENST00000277541	NM_017617.3	1719																																																																															
NOTCH1	0	MSKCC	GRCh37	9	139413079	139413079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	229	611	0	ENST00000277541.6:c.1063G>C	p.Ala355Pro	p.A355P	ENST00000277541	NM_017617.3	355	Gcc/Ccc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	21	609	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	51	752	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5208380	5208380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	47	676	0	ENST00000357368.4:c.5510G>T	p.Arg1837Leu	p.R1837L	ENST00000357368	NM_002850.3	1837	cGg/cTg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610155	10610155	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	65	811	0	ENST00000171111.5:c.555C>G	p.Ile185Met	p.I185M	ENST00000171111	NM_203500.1	185	atC/atG																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224523	36224523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	106	973	1	ENST00000222270.7:c.6985C>A	p.Pro2329Thr	p.P2329T	ENST00000222270	NM_014727.1	2329	Ccc/Acc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1936926	1936926	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	54	806	0	ENST00000382891.5:c.1611A>C	p.Glu537Asp	p.E537D	ENST00000382891	NM_133335.3	537	gaA/gaC																																																																														
EPHA7	0	MSKCC	GRCh37	6	93979207	93979207	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	19	416	0	ENST00000369303.4:c.1621A>C	p.Lys541Gln	p.K541Q	ENST00000369303	NM_004440.3	541	Aaa/Caa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465632	8465632	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs144936979		P-0027889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	49	664	1	ENST00000356435.5:c.3548G>T	p.Gly1183Val	p.G1183V	ENST00000356435		1183	gGg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	16	595	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604766	48604777	+	inframe_deletion	In_Frame_Del	DEL	CACCGGGCCCTC	CACCGGGCCCTC	-			P-0027891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	19	580	0	ENST00000342988.3:c.1590_1601del	p.His530_Leu533del	p.H530_L533del	ENST00000342988	NM_005359.5	530	CACCGGGCCCTC/-																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249503	153249503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	208	634	0	ENST00000281708.4:c.1275G>C	p.Trp425Cys	p.W425C	ENST00000281708	NM_033632.3	425	tgG/tgC																																																																														
TP53	0	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0027892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	289	737	0	ENST00000269305.4:c.489C>G	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taG																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952075	178952075	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	349	492	0	ENST00000263967.3:c.3130A>C	p.Asn1044His	p.N1044H	ENST00000263967	NM_006218.2	1044	Aat/Cat																																																																														
SOS1	0	MSKCC	GRCh37	2	39214691	39214691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	186	583	0	ENST00000402219.2:c.3433G>A	p.Asp1145Asn	p.D1145N	ENST00000402219	NM_005633.3	1145	Gat/Aat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			710	252	426	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198270085	198270085	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	266	481	0	ENST00000335508.6:c.1351C>T	p.Arg451Ter	p.R451*	ENST00000335508	NM_012433.2	451	Cga/Tga																																																																														
BRAF	0	MSKCC	GRCh37	7	140439617	140439617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	308	544	0	ENST00000288602.6:c.2122C>T	p.Pro708Ser	p.P708S	ENST00000288602	NM_004333.4	708	Ccc/Tcc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546761	9546761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	92	275	0	ENST00000353224.5:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000353224	NM_177990.2	421	Gac/Aac																																																																														
ARID2	0	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	56	477	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
FANCA	0	MSKCC	GRCh37	16	89836659	89836659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	357	690	0	ENST00000389301.3:c.2231C>T	p.Pro744Leu	p.P744L	ENST00000389301	NM_000135.2	744	cCc/cTc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435061	18435061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	24	431	0	ENST00000266497.5:c.46G>A	p.Glu16Lys	p.E16K	ENST00000266497		16	Gaa/Aaa																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885295	111885295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148636776		P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	35	447	0	ENST00000341259.2:c.1183G>A	p.Glu395Lys	p.E395K	ENST00000341259	NM_005475.2	395	Gag/Aag																																																																														
NF1	0	MSKCC	GRCh37	17	29556367	29556367	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	311	495	1	ENST00000358273.4:c.2734C>T	p.Gln912Ter	p.Q912*	ENST00000358273	NM_001042492.2	912	Caa/Taa																																																																														
AMER1	0	MSKCC	GRCh37	X	63410516	63410516	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201092215		P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	34	347	0	ENST00000330258.3:c.2651C>T	p.Pro884Leu	p.P884L	ENST00000330258	NM_152424.3	884	cCt/cTt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790129	40790129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	285	527	1	ENST00000373198.4:c.2602C>T	p.Pro868Ser	p.P868S	ENST00000373198	NM_133170.3	868	Ccc/Tcc																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944983	31944983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	330	645	0	ENST00000340398.3:c.118C>T	p.Arg40Cys	p.R40C	ENST00000340398	NM_001013699.2	40	Cgc/Tgc																																																																														
TET2	0	MSKCC	GRCh37	4	106157926	106157926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	155	320	0	ENST00000380013.4:c.2827C>T	p.Gln943Ter	p.Q943*	ENST00000380013	NM_001127208.2	943	Cag/Tag																																																																														
ESR1	0	MSKCC	GRCh37	6	152265308	152265308	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	182	299	0	ENST00000206249.3:c.761G>A	p.Gly254Glu	p.G254E	ENST00000206249	NM_000125.3	254	gGg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577540	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	358	547	2	ENST00000269305.4:c.741_742delinsTT	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	247	aaCCgg/aaTTgg																																																																														
PARP1	0	MSKCC	GRCh37	1	226549706	226549706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	299	545	0	ENST00000366794.5:c.2927C>T	p.Ser976Leu	p.S976L	ENST00000366794	NM_001618.3	976	tCa/tTa																																																																														
SHOC2	0	MSKCC	GRCh37	10	112745473	112745473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	332	658	0	ENST00000369452.4:c.791C>T	p.Thr264Ile	p.T264I	ENST00000369452	NM_007373.3	264	aCc/aTc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123324081	123324081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	243	468	0	ENST00000358487.5:c.389C>T	p.Ser130Phe	p.S130F	ENST00000358487	NM_000141.4	130	tCc/tTc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123353291	123353291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	327	641	0	ENST00000358487.5:c.41C>T	p.Thr14Ile	p.T14I	ENST00000358487	NM_000141.4	14	aCc/aTc																																																																														
KDM5A	0	MSKCC	GRCh37	12	441059	441059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	53	512	0	ENST00000399788.2:c.1699C>T	p.Pro567Ser	p.P567S	ENST00000399788	NM_001042603.1	567	Cct/Tct																																																																														
RAD52	0	MSKCC	GRCh37	12	1025562	1025563	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	278	573	3	ENST00000358495.3:c.812_813delinsAA	p.Arg271Gln	p.R271Q	ENST00000358495	NM_134424.2	271	cGG/cAA																																																																														
KRAS	0	MSKCC	GRCh37	12	25398246	25398246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	32	534	0	ENST00000256078.4:c.73C>T	p.Gln25Ter	p.Q25*	ENST00000256078	NM_033360.2	25	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433989	49433989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	304	673	0	ENST00000301067.7:c.7564C>T	p.Pro2522Ser	p.P2522S	ENST00000301067	NM_003482.3	2522	Cct/Tct																																																																														
IGF1R	0	MSKCC	GRCh37	15	99251250	99251250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	407	556	0	ENST00000268035.6:c.554C>T	p.Thr185Ile	p.T185I	ENST00000268035	NM_000875.3	185	aCc/aTc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348281	89348281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	390	771	1	ENST00000301030.4:c.4669C>T	p.Pro1557Ser	p.P1557S	ENST00000301030	NM_001256183.1	1557	Cca/Tca																																																																														
NF1	0	MSKCC	GRCh37	17	29592312	29592312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	277	487	0	ENST00000358273.4:c.4790G>A	p.Gly1597Glu	p.G1597E	ENST00000358273	NM_001042492.2	1597	gGg/gAg																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805540	46805540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	44	794	0	ENST00000290295.7:c.416C>T	p.Pro139Leu	p.P139L	ENST00000290295	NM_006361.5	139	cCt/cTt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599892	10599892	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199953210		P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	473	725	0	ENST00000171111.5:c.1684C>T	p.His562Tyr	p.H562Y	ENST00000171111	NM_203500.1	562	Cac/Tac																																																																														
CALR	0	MSKCC	GRCh37	19	13054581	13054581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	244	441	0	ENST00000316448.5:c.1108G>A	p.Glu370Lys	p.E370K	ENST00000316448	NM_004343.3	370	Gag/Aag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276302	15276302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	435	654	0	ENST00000263388.2:c.5692G>A	p.Asp1898Asn	p.D1898N	ENST00000263388	NM_000435.2	1898	Gac/Aac																																																																														
UPF1	0	MSKCC	GRCh37	19	18966774	18966774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	475	806	0	ENST00000262803.5:c.1585C>A	p.Gln529Lys	p.Q529K	ENST00000262803	NM_002911.3	529	Cag/Aag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214067	36214067	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	781	695	2	ENST00000222270.7:c.2893C>T	p.Arg965Ter	p.R965*	ENST00000222270	NM_014727.1	965	Cga/Tga																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467473	25467474	+	missense_variant	Missense_Mutation	DNP	AC	AC	TA			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	305	652	0	ENST00000264709.3:c.1602_1603delinsTA	p.Gln534_Ser535delinsHisThr	p.Q534_S535delinsHT	ENST00000264709	NM_175629.2	534	caGTcc/caTAcc																																																																														
ALK	0	MSKCC	GRCh37	2	29416377	29416377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	357	719	1	ENST00000389048.3:c.4576G>A	p.Glu1526Lys	p.E1526K	ENST00000389048	NM_004304.4	1526	Gag/Aag																																																																														
SOS1	0	MSKCC	GRCh37	2	39234320	39234320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	182	348	1	ENST00000402219.2:c.2525C>T	p.Thr842Ile	p.T842I	ENST00000402219	NM_005633.3	842	aCt/aTt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248623	212248623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	236	461	0	ENST00000342788.4:c.3644C>T	p.Thr1215Ile	p.T1215I	ENST00000342788	NM_005235.2	1215	aCc/aTc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212488728	212488728	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	308	483	0	ENST00000342788.4:c.2121A>C	p.Gln707His	p.Q707H	ENST00000342788	NM_005235.2	707	caA/caC																																																																														
RAC2	0	MSKCC	GRCh37	22	37628012	37628012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	394	725	0	ENST00000249071.6:c.248C>T	p.Ser83Phe	p.S83F	ENST00000249071	NM_002872.4	83	tCc/tTc																																																																														
BAP1	0	MSKCC	GRCh37	3	52437446	52437446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	265	417	2	ENST00000460680.1:c.1715C>T	p.Pro572Leu	p.P572L	ENST00000460680	NM_004656.3	572	cCc/cTc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670547	134670547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	352	645	0	ENST00000398015.3:c.458G>A	p.Gly153Glu	p.G153E	ENST00000398015	NM_004441.4	153	gGa/gAa																																																																														
KDR	0	MSKCC	GRCh37	4	55973952	55973952	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	211	483	1	ENST00000263923.4:c.1364A>G	p.His455Arg	p.H455R	ENST00000263923	NM_002253.2	455	cAc/cGc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177968	56177968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	41	449	0	ENST00000399503.3:c.2941C>T	p.Pro981Ser	p.P981S	ENST00000399503	NM_005921.1	981	Cca/Tca																																																																														
RAD50	0	MSKCC	GRCh37	5	131927644	131927644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	336	521	0	ENST00000265335.6:c.1711C>T	p.Pro571Ser	p.P571S	ENST00000265335		571	Ccc/Tcc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149436929	149436929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	301	640	0	ENST00000286301.3:c.2240G>A	p.Gly747Glu	p.G747E	ENST00000286301	NM_005211.3	747	gGa/gAa																																																																														
FLT4	0	MSKCC	GRCh37	5	180055898	180055898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	214	442	0	ENST00000261937.6:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000261937	NM_182925.4	363	Ccg/Tcg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163446	32163446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	344	572	0	ENST00000375023.3:c.5780C>T	p.Pro1927Leu	p.P1927L	ENST00000375023	NM_004557.3	1927	cCt/cTt																																																																														
ROS1	0	MSKCC	GRCh37	6	117638428	117638428	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	15	382	0	ENST00000368508.3:c.6013A>C	p.Asn2005His	p.N2005H	ENST00000368508	NM_002944.2	2005	Aat/Cat																																																																														
ROS1	0	MSKCC	GRCh37	6	117658454	117658454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	35	600	0	ENST00000368508.3:c.5129C>T	p.Pro1710Leu	p.P1710L	ENST00000368508	NM_002944.2	1710	cCt/cTt																																																																														
ROS1	0	MSKCC	GRCh37	6	117684026	117684026	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	160	321	0	ENST00000368508.3:c.3121C>T	p.Pro1041Ser	p.P1041S	ENST00000368508	NM_002944.2	1041	Cca/Tca																																																																														
ARID1B	0	MSKCC	GRCh37	6	157511303	157511303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	250	459	0	ENST00000346085.5:c.3821C>T	p.Pro1274Leu	p.P1274L	ENST00000346085	NM_020732.3	1274	cCc/cTc																																																																														
CARD11	0	MSKCC	GRCh37	7	2953056	2953056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	352	646	0	ENST00000396946.4:c.2884C>T	p.Pro962Ser	p.P962S	ENST00000396946	NM_032415.4	962	Ccc/Tcc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528741	8528741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	208	403	0	ENST00000356435.5:c.391G>A	p.Gly131Ser	p.G131S	ENST00000356435		131	Ggc/Agc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44820632	44820632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	29	193	0	ENST00000377967.4:c.329C>T	p.Pro110Leu	p.P110L	ENST00000377967	NM_021140.2	110	cCa/cTa																																																																														
MED12	0	MSKCC	GRCh37	X	70338639	70338639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	50	292	0	ENST00000374080.3:c.35G>A	p.Arg12Gln	p.R12Q	ENST00000374080		12	cGg/cAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76849194	76849194	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	277	246	2	ENST00000373344.5:c.6082C>T	p.Arg2028Ter	p.R2028*	ENST00000373344	NM_000489.3	2028	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	169	625	0	ENST00000269305.4:c.949delC	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	317	Cag/ag																																																																														
RAD21	0	MSKCC	GRCh37	8	117869691	117869691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	25	401	0	ENST00000297338.2:c.503G>A	p.Arg168His	p.R168H	ENST00000297338	NM_006265.2	168	cGt/cAt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9984937	9984937	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	51	549	0	ENST00000330684.3:c.1028G>A	p.Trp343Ter	p.W343*	ENST00000330684	NM_001134407.1	343	tGg/tAg																																																																														
ATM	0	MSKCC	GRCh37	11	108155106	108155106	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs183263185		P-0027754-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	49	524	0	ENST00000278616.4:c.3899A>G	p.Tyr1300Cys	p.Y1300C	ENST00000278616	NM_000051.3	1300	tAt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0027755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	203	681	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
MTOR	0	MSKCC	GRCh37	1	11217230	11217230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	171	489	2	ENST00000361445.4:c.4448G>A	p.Cys1483Tyr	p.C1483Y	ENST00000361445	NM_004958.3	1483	tGc/tAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	116	445	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	318	580	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
TBX3	0	MSKCC	GRCh37	12	115120674	115120675	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TAA			P-0027759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	377	783	0	ENST00000257566.3:c.331_332insTTA	p.Glu111delinsValLys	p.E111delinsVK	ENST00000257566	NM_016569.3	111	gaa/gTTAaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	198	465	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	195	523	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395776	45395776	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	125	314	0	ENST00000262160.6:c.358C>T	p.Arg120Ter	p.R120*	ENST00000262160	NM_005901.5	120	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175784	112175799	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGATTTTCTTGTTC	ATGGATTTTCTTGTTC	-			P-0027760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	189	283	0	ENST00000257430.4:c.4495_4510del	p.Gly1499ProfsTer3	p.G1499Pfs*3	ENST00000257430	NM_000038.5	1498	gATGGATTTTCTTGTTCa/ga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911512	114911512	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	137	278	0	ENST00000543371.1:c.1030G>T	p.Glu344Ter	p.E344*	ENST00000543371	NM_001198531.1	344	Gaa/Taa																																																																														
CARD11	0	MSKCC	GRCh37	7	2962788	2962788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201948130		P-0027760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	184	490	1	ENST00000396946.4:c.2120G>A	p.Arg707His	p.R707H	ENST00000396946	NM_032415.4	707	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	290	567	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143114337	143114337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	91	461	1	ENST00000262992.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000262992	NM_001101669.1	362	Gat/Aat																																																																														
APC	0	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	74	581	2	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																														
ALK	0	MSKCC	GRCh37	2	29443675	29443675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	286	580	1	ENST00000389048.3:c.3542G>A	p.Arg1181His	p.R1181H	ENST00000389048	NM_004304.4	1181	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175902	112175903	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	27	276	0	ENST00000257430.4:c.4612_4613del	p.Glu1538IlefsTer5	p.E1538Ifs*5	ENST00000257430	NM_000038.5	1537	acAGaa/acaa																																																																														
RET	0	MSKCC	GRCh37	10	43600621	43600621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	87	505	2	ENST00000355710.3:c.847G>A	p.Val283Met	p.V283M	ENST00000355710	NM_020975.4	283	Gtg/Atg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907071	32907071	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	95	446	0	ENST00000380152.3:c.1456C>T	p.Gln486Ter	p.Q486*	ENST00000380152		486	Cag/Tag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89345482	89345482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	67	405	0	ENST00000301030.4:c.7468G>A	p.Val2490Met	p.V2490M	ENST00000301030	NM_001256183.1	2490	Gtg/Atg																																																																														
SUZ12	0	MSKCC	GRCh37	17	30264450	30264450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	93	569	0	ENST00000322652.5:c.185C>G	p.Ala62Gly	p.A62G	ENST00000322652	NM_015355.2	62	gCa/gGa																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	208	702	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	58	199	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
EGFL7	0	MSKCC	GRCh37	9	139564081	139564081	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200217167		P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	151	549	2	ENST00000308874.7:c.221G>A	p.Arg74His	p.R74H	ENST00000308874		74	cGc/cAc																																																																														
ATM	0	MSKCC	GRCh37	11	108218078	108218083	+	inframe_deletion	In_Frame_Del	DEL	TACATA	TACATA	-			P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	139	355	0	ENST00000278616.4:c.8659_8664del	p.His2887_Ile2888del	p.H2887_I2888del	ENST00000278616	NM_000051.3	2886	gTACATAta/gta																																																																														
PTPRS	0	MSKCC	GRCh37	19	5220326	5220326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	160	529	0	ENST00000357368.4:c.3494G>A	p.Arg1165His	p.R1165H	ENST00000357368	NM_002850.3	1165	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112174724	112174724	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	113	296	0	ENST00000257430.4:c.3433G>T	p.Glu1145Ter	p.E1145*	ENST00000257430	NM_000038.5	1145	Gaa/Taa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845260	151845261	+	missense_variant	Missense_Mutation	DNP	CC	CC	GG			P-0027763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	78	333	0	ENST00000262189.6:c.13751_13752inv	p.Arg4584Pro	p.R4584P	ENST00000262189	NM_170606.2	4584	cGG/cCC																																																																														
PMS2	0	MSKCC	GRCh37	7	6026535	6026535	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	64	667	0	ENST00000265849.7:c.1861del	p.Ser621LeufsTer2	p.S621Lfs*2	ENST00000265849	NM_000535.5	621	Tct/ct																																																																														
EZH2	0	MSKCC	GRCh37	7	148504767	148504767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	95	412	1	ENST00000320356.2:c.2227G>A	p.Gly743Ser	p.G743S	ENST00000320356	NM_004456.4	743	Ggc/Agc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	157	433	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	203	535	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280142	66280142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	84	262	2	ENST00000273854.3:c.1547C>T	p.Thr516Met	p.T516M	ENST00000273854	NM_004439.5	516	aCg/aTg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25973061	25973061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	103	380	2	ENST00000435504.4:c.1364C>T	p.Pro455Leu	p.P455L	ENST00000435504		455	cCg/cTg																																																																														
TSC2	0	MSKCC	GRCh37	16	2114414	2114414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	189	659	0	ENST00000219476.3:c.1585G>A	p.Asp529Asn	p.D529N	ENST00000219476	NM_000548.3	529	Gac/Aac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778389	3778394	+	inframe_deletion	In_Frame_Del	DEL	CCGGCA	CCGGCA	-			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	160	515	0	ENST00000262367.5:c.6654_6659del	p.Ala2219_Gly2220del	p.A2219_G2220del	ENST00000262367	NM_004380.2	2218	agTGCCGGc/agc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14021925	14021925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	164	424	0	ENST00000311895.7:c.625C>A	p.Pro209Thr	p.P209T	ENST00000311895	NM_005236.2	209	Cct/Act																																																																														
EP300	0	MSKCC	GRCh37	22	41574579	41574579	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	186	651	0	ENST00000263253.7:c.6864G>C	p.Gln2288His	p.Q2288H	ENST00000263253	NM_001429.3	2288	caG/caC																																																																														
GATA2	0	MSKCC	GRCh37	3	128200021	128200021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	160	573	0	ENST00000341105.2:c.1284C>G	p.Phe428Leu	p.F428L	ENST00000341105	NM_032638.4	428	ttC/ttG																																																																														
FLT4	0	MSKCC	GRCh37	5	180043967	180043967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	139	522	0	ENST00000261937.6:c.3029C>T	p.Thr1010Ile	p.T1010I	ENST00000261937	NM_182925.4	1010	aCc/aTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46244872	46244872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	244	673	0	ENST00000334344.6:c.2966C>T	p.Ser989Leu	p.S989L	ENST00000334344	NM_152641.2	989	tCg/tTg																																																																														
AKT3	0	MSKCC	GRCh37	1	243716098	243716098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	360	629	1	ENST00000263826.5:c.1096C>T	p.Pro366Ser	p.P366S	ENST00000263826	NM_005465.4	366	Cct/Tct																																																																														
BRCA2	0	MSKCC	GRCh37	13	32918761	32918761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	77	466	2	ENST00000380152.3:c.6908C>T	p.Ser2303Phe	p.S2303F	ENST00000380152		2303	tCc/tTc																																																																														
CARD11	0	MSKCC	GRCh37	7	2968251	2968251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	545	704	2	ENST00000396946.4:c.1735G>A	p.Glu579Lys	p.E579K	ENST00000396946	NM_032415.4	579	Gag/Aag																																																																														
ABL1	0	MSKCC	GRCh37	9	133760169	133760169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	141	654	1	ENST00000318560.5:c.2492C>T	p.Pro831Leu	p.P831L	ENST00000318560	NM_005157.4	831	cCc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	230	594	0	ENST00000269305.4:c.989T>C	p.Leu330Pro	p.L330P	ENST00000269305	NM_001126112.2	330	cTt/cCt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508783	106508783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	112	521	1	ENST00000359195.3:c.777G>A	p.Met259Ile	p.M259I	ENST00000359195	NM_002649.2	259	atG/atA																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249501	153249501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1316840275		P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	85	617	1	ENST00000281708.4:c.1277C>T	p.Ser426Leu	p.S426L	ENST00000281708	NM_033632.3	426	tCa/tTa																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470474	25470474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	67	758	0	ENST00000264709.3:c.1000G>A	p.Gly334Ser	p.G334S	ENST00000264709	NM_175629.2	334	Ggc/Agc																																																																														
FGF4	0	MSKCC	GRCh37	11	69588868	69588868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	147	605	0	ENST00000168712.1:c.368G>A	p.Arg123Gln	p.R123Q	ENST00000168712	NM_002007.2	123	cGg/cAg																																																																														
FYN	0	MSKCC	GRCh37	6	112015732	112015732	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	92	473	0	ENST00000368678.4:c.1111-1G>A		p.X371_splice	ENST00000368678		371																																																																															
DROSHA	0	MSKCC	GRCh37	5	31429602	31429602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	200	652	0	ENST00000344624.3:c.3196C>T	p.Arg1066Cys	p.R1066C	ENST00000344624		1066	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101274	27101274	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	42	594	0	ENST00000324856.7:c.4556A>G	p.Gln1519Arg	p.Q1519R	ENST00000324856	NM_006015.4	1519	cAg/cGg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114903757	114903757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	85	653	0	ENST00000543371.1:c.761C>T	p.Pro254Leu	p.P254L	ENST00000543371	NM_001198531.1	254	cCc/cTc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180390	94180390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	61	406	0	ENST00000323929.3:c.1778G>A	p.Gly593Glu	p.G593E	ENST00000323929	NM_005591.3	593	gGa/gAa																																																																														
ETV6	0	MSKCC	GRCh37	12	12006496	12006496	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	592	817	0	ENST00000396373.4:c.463+1G>A		p.X155_splice	ENST00000396373	NM_001987.4	155																																																																															
KMT2D	0	MSKCC	GRCh37	12	49420939	49420940	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	182	584	2	ENST00000301067.7:c.14809_14810delinsTT	p.Pro4937Phe	p.P4937F	ENST00000301067	NM_003482.3	4937	CCc/TTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421833	49421833	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	251	801	0	ENST00000301067.7:c.14474G>T	p.Arg4825Leu	p.R4825L	ENST00000301067	NM_003482.3	4825	cGg/cTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436429	49436429	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	127	462	0	ENST00000301067.7:c.5783-1G>A		p.X1928_splice	ENST00000301067	NM_003482.3	1928																																																																															
KMT2D	0	MSKCC	GRCh37	12	49445343	49445343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	306	909	1	ENST00000301067.7:c.2123C>T	p.Ser708Phe	p.S708F	ENST00000301067	NM_003482.3	708	tCc/tTc																																																																														
FLT1	0	MSKCC	GRCh37	13	28913380	28913380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	133	662	1	ENST00000282397.4:c.2413C>T	p.Pro805Ser	p.P805S	ENST00000282397	NM_002019.4	805	Cct/Tct																																																																														
BRCA2	0	MSKCC	GRCh37	13	32932058	32932058	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	24	345	0	ENST00000380152.3:c.7797A>T	p.Glu2599Asp	p.E2599D	ENST00000380152		2599	gaA/gaT																																																																														
PRKD1	0	MSKCC	GRCh37	14	30046616	30046616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	138	638	2	ENST00000331968.5:c.2567G>A	p.Gly856Glu	p.G856E	ENST00000331968	NM_002742.2	856	gGg/gAg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30066913	30066914	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	111	580	2	ENST00000331968.5:c.2217_2218delinsTT	p.Arg740Trp	p.R740W	ENST00000331968	NM_002742.2	739	ttCCgg/ttTTgg																																																																														
TSHR	0	MSKCC	GRCh37	14	81609817	81609817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	178	293	0	ENST00000298171.2:c.1415C>T	p.Ser472Phe	p.S472F	ENST00000298171	NM_000369.2	472	tCt/tTt																																																																														
DICER1	0	MSKCC	GRCh37	14	95574239	95574239	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	97	404	0	ENST00000343455.3:c.2628C>A	p.Tyr876Ter	p.Y876*	ENST00000343455	NM_177438.2	876	taC/taA																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43714275	43714275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	119	696	1	ENST00000382044.4:c.3878C>T	p.Ser1293Phe	p.S1293F	ENST00000382044	NM_001141980.1	1293	tCc/tTc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43767787	43767787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	82	565	0	ENST00000382044.4:c.1061C>T	p.Ser354Phe	p.S354F	ENST00000382044	NM_001141980.1	354	tCc/tTc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245953	41245953	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	166	700	0	ENST00000357654.3:c.1595T>G	p.Ile532Arg	p.I532R	ENST00000357654	NM_007294.3	532	aTa/aGa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15285131	15285131	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	190	700	0	ENST00000263388.2:c.4484G>A	p.Trp1495Ter	p.W1495*	ENST00000263388	NM_000435.2	1495	tGg/tAg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25505337	25505337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	343	606	1	ENST00000264709.3:c.421G>A	p.Glu141Lys	p.E141K	ENST00000264709	NM_175629.2	141	Gag/Aag																																																																														
MSH6	0	MSKCC	GRCh37	2	48018095	48018095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	447	623	0	ENST00000234420.5:c.290G>A	p.Trp97Ter	p.W97*	ENST00000234420	NM_000179.2	97	tGg/tAg																																																																														
ERCC3	0	MSKCC	GRCh37	2	128015228	128015228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	94	578	0	ENST00000285398.2:c.2293C>T	p.Arg765Trp	p.R765W	ENST00000285398	NM_000122.1	765	Cgg/Tgg																																																																														
ERCC3	0	MSKCC	GRCh37	2	128046242	128046242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	68	463	0	ENST00000285398.2:c.1021C>T	p.Pro341Ser	p.P341S	ENST00000285398	NM_000122.1	341	Ccc/Tcc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812204	212812204	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	71	419	0	ENST00000342788.4:c.372A>C	p.Arg124Ser	p.R124S	ENST00000342788	NM_005235.2	124	agA/agC																																																																														
SRC	0	MSKCC	GRCh37	20	36031762	36031762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	79	619	0	ENST00000358208.4:c.1591C>T	p.Gln531Ter	p.Q531*	ENST00000358208		531	Cag/Tag																																																																														
ERG	0	MSKCC	GRCh37	21	39755594	39755594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	175	495	1	ENST00000288319.7:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000288319	NM_182918.3	391	Gac/Aac																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30648469	30648470	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	161	454	1	ENST00000359013.4:c.94_94+1delinsAA		p.X32_splice	ENST00000359013	NM_001024847.2	32																																																																															
ATR	0	MSKCC	GRCh37	3	142286973	142286973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	123	568	0	ENST00000350721.4:c.83C>T	p.Thr28Ile	p.T28I	ENST00000350721	NM_001184.3	28	aCa/aTa																																																																														
TP63	0	MSKCC	GRCh37	3	189526301	189526301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	137	429	0	ENST00000264731.3:c.565T>C	p.Ser189Pro	p.S189P	ENST00000264731	NM_003722.4	189	Tcg/Ccg																																																																														
TP63	0	MSKCC	GRCh37	3	189607239	189607239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	181	747	1	ENST00000264731.3:c.1618C>T	p.Pro540Ser	p.P540S	ENST00000264731	NM_003722.4	540	Cca/Tca																																																																														
KDR	0	MSKCC	GRCh37	4	55976617	55976617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	185	607	2	ENST00000263923.4:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000263923	NM_002253.2	403	cCc/cTc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213898	66213899	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	84	463	0	ENST00000273854.3:c.2531_2532delinsAA	p.Trp844Ter	p.W844*	ENST00000273854	NM_004439.5	844	tGG/tAA																																																																														
FAT1	0	MSKCC	GRCh37	4	187534307	187534307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	42	599	0	ENST00000441802.2:c.9419C>T	p.Pro3140Leu	p.P3140L	ENST00000441802	NM_005245.3	3140	cCg/cTg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56180496	56180497	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	27	411	0	ENST00000399503.3:c.3825_3826del	p.Tyr1276CysfsTer7	p.Y1276Cfs*7	ENST00000399503	NM_005921.1	1275	acTTat/acat																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459615	149459615	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	196	494	0	ENST00000286301.3:c.592G>A	p.Val198Ile	p.V198I	ENST00000286301	NM_005211.3	198	Gtc/Atc																																																																														
HIST1H3A	0	MSKCC	GRCh37	6	26021061	26021061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	125	480	1	ENST00000357647.3:c.344C>T	p.Ala115Val	p.A115V	ENST00000357647	NM_003529.2	115	gCc/gTc																																																																														
MDC1	0	MSKCC	GRCh37	6	30668357	30668357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	286	608	0	ENST00000376406.3:c.6155C>T	p.Pro2052Leu	p.P2052L	ENST00000376406	NM_014641.2	2052	cCa/cTa																																																																														
MDC1	0	MSKCC	GRCh37	6	30670912	30670912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	195	698	0	ENST00000376406.3:c.5834T>C	p.Ile1945Thr	p.I1945T	ENST00000376406	NM_014641.2	1945	aTc/aCc																																																																														
STK19	0	MSKCC	GRCh37	6	31940288	31940288	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	57	573	0	ENST00000375331.2:c.430G>A	p.Gly144Arg	p.G144R	ENST00000375331	NM_004197.1	144	Ggg/Agg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32185017	32185017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	100	712	0	ENST00000375023.3:c.1651G>A	p.Asp551Asn	p.D551N	ENST00000375023	NM_004557.3	551	Gat/Aat																																																																														
ROS1	0	MSKCC	GRCh37	6	117709176	117709176	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	61	452	1	ENST00000368508.3:c.1781T>A	p.Ile594Asn	p.I594N	ENST00000368508	NM_002944.2	594	aTt/aAt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873694	151873695	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	340	627	3	ENST00000262189.6:c.8843_8844delinsTT	p.Ser2948Phe	p.S2948F	ENST00000262189	NM_170606.2	2948	tCC/tTT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486016	8486016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	156	573	0	ENST00000356435.5:c.2801C>T	p.Ser934Phe	p.S934F	ENST00000356435		934	tCc/tTc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971147	21971161	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCTCCGCGCCGT	TGGGCTCCGCGCCGT	GGTC			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	118	397	2	ENST00000304494.5:c.197_211delinsGACC	p.His66ArgfsTer50	p.H66Rfs*50	ENST00000304494	NM_000077.4	66	cACGGCGCGGAGCCCAac/cGACCac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971147	21971161	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCTCCGCGCCGT	TGGGCTCCGCGCCGT	GGTC			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	118	397	2	ENST00000304494.5:c.197_211delinsGACC	p.His66ArgfsTer50	p.H66Rfs*50	ENST00000304494	NM_000077.4	66	cACGGCGCGGAGCCCAac/cGACCac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971147	21971161	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCTCCGCGCCGT	TGGGCTCCGCGCCGT	GGTC			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	118	397	2	ENST00000304494.5:c.197_211delinsGACC	p.His66ArgfsTer50	p.H66Rfs*50	ENST00000304494	NM_000077.4	66	cACGGCGCGGAGCCCAac/cGACCac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399276	139399276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	426	617	0	ENST00000277541.6:c.4867G>T	p.Glu1623Ter	p.E1623*	ENST00000277541	NM_017617.3	1623	Gag/Tag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0027806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	38	695	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
BRAF	0	MSKCC	GRCh37	7	140453150	140453150	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	32	502	0	ENST00000288602.6:c.1785T>G	p.Phe595Leu	p.F595L	ENST00000288602	NM_004333.4	595	ttT/ttG																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89357501	89357501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	154	691	2	ENST00000301030.4:c.317G>A	p.Arg106Gln	p.R106Q	ENST00000301030	NM_001256183.1	106	cGa/cAa																																																																														
NF2	0	MSKCC	GRCh37	22	30057221	30057221	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	157	505	0	ENST00000338641.4:c.703G>T	p.Gly235Ter	p.G235*	ENST00000338641	NM_000268.3	235	Gga/Tga																																																																														
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	80	575	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	14	250	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	28	656	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
CTLA4	0	MSKCC	GRCh37	2	204735525	204735525	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144988077		P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	22	480	0	ENST00000302823.3:c.326G>A	p.Gly109Glu	p.G109E	ENST00000302823	NM_005214.4	109	gGa/gAa																																																																														
ARID2	0	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	23	462	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528644	89528644	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147992008		P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	12	260	0	ENST00000336596.2:c.2944C>T	p.Pro982Ser	p.P982S	ENST00000336596	NM_005233.5	982	Ccc/Tcc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9892177	9892177	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	27	630	0	ENST00000330684.3:c.2313G>A	p.Trp771Ter	p.W771*	ENST00000330684	NM_001134407.1	771	tgG/tgA																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139408984	139408984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	115	581	1	ENST00000277541.6:c.2185G>A	p.Ala729Thr	p.A729T	ENST00000277541	NM_017617.3	729	Gcc/Acc																																																																														
RAD51B	0	MSKCC	GRCh37	14	68331729	68331729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	23	188	0	ENST00000487270.1:c.325C>T	p.Pro109Ser	p.P109S	ENST00000487270	NM_133509.3	109	Cca/Tca																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	80	687	1	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78938099	78938099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	60	621	1	ENST00000306801.3:c.3977C>T	p.Ser1326Phe	p.S1326F	ENST00000306801	NM_020761.2	1326	tCc/tTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100912	41100912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	13	535	0	ENST00000373198.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000373198	NM_133170.3	482	Gaa/Aaa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18658353	18658353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	23	508	0	ENST00000266497.5:c.3158G>A	p.Gly1053Glu	p.G1053E	ENST00000266497		1053	gGa/gAa																																																																														
MTOR	0	MSKCC	GRCh37	1	11227555	11227555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	80	523	0	ENST00000361445.4:c.4273C>A	p.Gln1425Lys	p.Q1425K	ENST00000361445	NM_004958.3	1425	Cag/Aag																																																																														
PTPN11	0	MSKCC	GRCh37	12	112884196	112884196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	27	603	0	ENST00000351677.2:c.131C>T	p.Ser44Phe	p.S44F	ENST00000351677	NM_002834.3	44	tCc/tTc																																																																														
TSC2	0	MSKCC	GRCh37	16	2134637	2134637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	74	729	0	ENST00000219476.3:c.4414G>A	p.Gly1472Ser	p.G1472S	ENST00000219476	NM_000548.3	1472	Ggc/Agc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831587	72831587	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	17	608	1	ENST00000268489.5:c.4994C>G	p.Thr1665Ser	p.T1665S	ENST00000268489	NM_006885.3	1665	aCc/aGc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42845289	42845289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	15	659	0	ENST00000398585.3:c.973C>T	p.Pro325Ser	p.P325S	ENST00000398585	NM_001135099.1	325	Ccc/Tcc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30733072	30733072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	37	443	0	ENST00000359013.4:c.1760C>T	p.Ser587Phe	p.S587F	ENST00000359013	NM_001024847.2	587	tCc/tTc																																																																														
CDH1	0	MSKCC	GRCh37	16	68842705	68842705	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	169	708	1	ENST00000261769.5:c.641T>A	p.Leu214Gln	p.L214Q	ENST00000261769	NM_004360.3	214	cTg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0027809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	74	611	0	ENST00000269305.4:c.559+2T>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	47	586	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0027811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	382	554	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	109	488	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
RARA	0	MSKCC	GRCh37	17	38508266	38508266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	103	543	2	ENST00000254066.5:c.574C>T	p.Arg192Cys	p.R192C	ENST00000254066	NM_000964.3	192	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	165	520	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	302	601	0	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18691209	18691209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	144	409	1	ENST00000266497.5:c.3320G>A	p.Arg1107Lys	p.R1107K	ENST00000266497		1107	aGa/aAa																																																																														
ARID2	0	MSKCC	GRCh37	12	46246227	46246227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	137	426	1	ENST00000334344.6:c.4321C>T	p.Gln1441Ter	p.Q1441*	ENST00000334344	NM_152641.2	1441	Caa/Taa																																																																														
HNF1A	0	MSKCC	GRCh37	12	121416717	121416717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	175	675	0	ENST00000257555.6:c.146C>A	p.Ser49Tyr	p.S49Y	ENST00000257555		49	tCc/tAc																																																																														
MAX	0	MSKCC	GRCh37	14	65560459	65560459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	137	452	0	ENST00000358664.4:c.138G>C	p.Leu46Phe	p.L46F	ENST00000358664	NM_002382.4	46	ttG/ttC																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991922	72991922	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	131	495	0	ENST00000268489.5:c.2123A>C	p.Gln708Pro	p.Q708P	ENST00000268489	NM_006885.3	708	cAg/cCg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346236	89346236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	57	300	0	ENST00000301030.4:c.6714C>G	p.Ser2238Arg	p.S2238R	ENST00000301030	NM_001256183.1	2238	agC/agG																																																																														
RARA	0	MSKCC	GRCh37	17	38512341	38512341	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	116	546	0	ENST00000254066.5:c.1252G>C	p.Glu418Gln	p.E418Q	ENST00000254066	NM_000964.3	418	Gag/Cag																																																																														
MET	0	MSKCC	GRCh37	7	116339416	116339416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	49	421	0	ENST00000397752.3:c.278C>T	p.Pro93Leu	p.P93L	ENST00000397752	NM_000245.2	93	cCa/cTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	95	658	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	156	582	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0027815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	159	215	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0027815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	477	648	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
RBM10	0	MSKCC	GRCh37	X	47045016	47045016	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0027815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	241	349	0	ENST00000329236.7:c.2108C>G	p.Ser703Ter	p.S703*	ENST00000329236	NM_001204466.1	703	tCa/tGa																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20148727	20148727	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0027815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	148	194	0	ENST00000379607.5:c.338-2A>C		p.X113_splice	ENST00000379607	NM_001412.3	113																																																																															
RBM10	0	MSKCC	GRCh37	X	47034489	47034489	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0027815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	112	330	0	ENST00000329236.7:c.343C>T	p.Gln115Ter	p.Q115*	ENST00000329236	NM_001204466.1	115	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0027828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	4051	559	4	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	198	667	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
CCND2	0	MSKCC	GRCh37	12	4387998	4387998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	165	445	0	ENST00000261254.3:c.484C>T	p.His162Tyr	p.H162Y	ENST00000261254	NM_001759.3	162	Cac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	80	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	88	482	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
AXL	0	MSKCC	GRCh37	19	41765567	41765567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	94	507	1	ENST00000301178.4:c.2443G>A	p.Glu815Lys	p.E815K	ENST00000301178	NM_021913.4	815	Gag/Aag																																																																														
ATM	0	MSKCC	GRCh37	11	108214065	108214074	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCAGTGCC	TTTCAGTGCC	-			P-0027831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	240	241	0	ENST00000278616.4:c.8395_8404delTTTCAGTGCC	p.Phe2799LysfsTer4	p.F2799Kfs*4	ENST00000278616	NM_000051.3	2795	gaTTTCAGTGCC/ga																																																																														
NF1	0	MSKCC	GRCh37	17	29497003	29497003	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	256	217	0	ENST00000358273.4:c.574C>T	p.Arg192Ter	p.R192*	ENST00000358273	NM_001042492.2	192	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	279	579	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																														
STK11	0	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	178	441	0	ENST00000326873.7:c.734+1G>A		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																															
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	101	442	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602878	10602878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	304	638	1	ENST00000171111.5:c.700C>T	p.Arg234Trp	p.R234W	ENST00000171111	NM_203500.1	234	Cgg/Tgg																																																																														
MDM2	0	MSKCC	GRCh37	12	69233073	69233073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	60	240	0	ENST00000462284.1:c.938C>T	p.Ser313Leu	p.S313L	ENST00000462284	NM_002392.5	313	tCa/tTa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900314	3900314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	98	394	0	ENST00000262367.5:c.782C>T	p.Ala261Val	p.A261V	ENST00000262367	NM_004380.2	261	gCa/gTa																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18277045	18277045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	101	487	0	ENST00000222254.8:c.1492C>G	p.Gln498Glu	p.Q498E	ENST00000222254	NM_005027.3	498	Caa/Gaa																																																																														
DROSHA	0	MSKCC	GRCh37	5	31472312	31472312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	79	415	0	ENST00000344624.3:c.2099A>G	p.His700Arg	p.H700R	ENST00000344624		700	cAc/cGc																																																																														
RASA1	0	MSKCC	GRCh37	5	86685294	86685294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	63	160	0	ENST00000274376.6:c.3010G>T	p.Ala1004Ser	p.A1004S	ENST00000274376	NM_002890.2	1004	Gct/Tct																																																																														
CDK6	0	MSKCC	GRCh37	7	92462508	92462508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	337	400	0	ENST00000265734.4:c.130C>A	p.Arg44Ser	p.R44S	ENST00000265734	NM_001259.6	44	Cgc/Agc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528742	8528742	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1061345		P-0027832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	123	290	0	ENST00000356435.5:c.390G>T	p.Met130Ile	p.M130I	ENST00000356435		130	atG/atT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0027834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	53	344	0				ENST00000310581	NM_198253.2																																																																																
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	238	683	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
PTEN	0	MSKCC	GRCh37	10	89717695	89717696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	54	450	0	ENST00000371953.3:c.723dupT	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	240	-/T																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	67	319	0	ENST00000349496.5:c.134C>A	p.Ser45Tyr	p.S45Y	ENST00000349496	NM_001904.3	45	tCt/tAt																																																																														
EZH2	0	MSKCC	GRCh37	7	148506467	148506467	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	50	321	0	ENST00000320356.2:c.2045C>G	p.Ala682Gly	p.A682G	ENST00000320356	NM_004456.4	682	gCa/gGa																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0027834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	95	669	1	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711895	89711895	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	91	451	0	ENST00000371953.3:c.513G>C	p.Gln171His	p.Q171H	ENST00000371953	NM_000314.4	171	caG/caC																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099387	27099393	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGGG	CCCTGGG	-			P-0027834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	100	624	0	ENST00000324856.7:c.3624_3630del	p.Pro1209IlefsTer5	p.P1209Ifs*5	ENST00000324856	NM_006015.4	1208	aaCCCTGGG/aa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3828161	3828161	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	63	308	0	ENST00000262367.5:c.1964del	p.Ala655GlufsTer11	p.A655Efs*11	ENST00000262367	NM_004380.2	655	gCa/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0027837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	50	412	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0027837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	102	277	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0027837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	102	277	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	47	540	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																														
MGA	0	MSKCC	GRCh37	15	42041459	42041459	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	38	509	1	ENST00000219905.7:c.5654C>A	p.Ser1885Ter	p.S1885*	ENST00000219905	NM_001164273.1	1885	tCa/tAa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0027837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	102	277	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	32	339	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879043	151879043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	57	508	0	ENST00000262189.6:c.5902G>A	p.Asp1968Asn	p.D1968N	ENST00000262189	NM_170606.2	1968	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	463	717	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ATRX	0	MSKCC	GRCh37	X	76856030	76856030	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	71	480	0	ENST00000373344.5:c.5570T>C	p.Val1857Ala	p.V1857A	ENST00000373344	NM_000489.3	1857	gTg/gCg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	14	489	0	ENST00000288602.6:c.1790T>G	p.Leu597Arg	p.L597R	ENST00000288602	NM_004333.4	597	cTa/cGa																																																																														
MDC1	0	MSKCC	GRCh37	6	30680827	30680827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	281	613	0	ENST00000376406.3:c.892G>A	p.Asp298Asn	p.D298N	ENST00000376406	NM_014641.2	298	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	130	587	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420272	88420272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	107	515	1	ENST00000360948.2:c.2414G>T	p.Gly805Val	p.G805V	ENST00000360948	NM_001012338.2	805	gGg/gTg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156846267	156846267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	126	589	0	ENST00000524377.1:c.1708C>A	p.Gln570Lys	p.Q570K	ENST00000524377	NM_002529.3	570	Cag/Aag																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175795	176175795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	32	380	0	ENST00000367669.3:c.320G>T	p.Gly107Val	p.G107V	ENST00000367669	NM_022457.5	107	gGc/gTc																																																																														
MDM4	0	MSKCC	GRCh37	1	204518341	204518341	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	30	500	0	ENST00000367182.3:c.1004C>G	p.Ser335Ter	p.S335*	ENST00000367182	NM_001278516.1	335	tCa/tGa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71936170	71936170	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	17	291	0	ENST00000298229.2:c.142G>C	p.Asp48His	p.D48H	ENST00000298229	NM_001567.3	48	Gac/Cac																																																																														
EED	0	MSKCC	GRCh37	11	85979551	85979551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	124	552	0	ENST00000263360.6:c.914A>G	p.His305Arg	p.H305R	ENST00000263360	NM_003797.3	305	cAt/cGt																																																																														
POLE	0	MSKCC	GRCh37	12	133201517	133201517	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	21	634	0	ENST00000320574.5:c.6721G>C	p.Asp2241His	p.D2241H	ENST00000320574	NM_006231.2	2241	Gac/Cac																																																																														
MGA	0	MSKCC	GRCh37	15	42053967	42053967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	90	450	0	ENST00000219905.7:c.7429C>T	p.Gln2477Ter	p.Q2477*	ENST00000219905	NM_001164273.1	2477	Cag/Tag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900860	3900860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	174	513	0	ENST00000262367.5:c.236G>T	p.Gly79Val	p.G79V	ENST00000262367	NM_004380.2	79	gGc/gTc																																																																														
PALB2	0	MSKCC	GRCh37	16	23641722	23641722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	166	508	1	ENST00000261584.4:c.1753G>A	p.Asp585Asn	p.D585N	ENST00000261584	NM_024675.3	585	Gat/Aat																																																																														
CBFB	0	MSKCC	GRCh37	16	67132656	67132656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	182	607	0	ENST00000412916.2:c.539G>T	p.Gly180Val	p.G180V	ENST00000412916		180	gGt/gTt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59878810	59878810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	73	328	0	ENST00000259008.2:c.944G>C	p.Gly315Ala	p.G315A	ENST00000259008	NM_032043.2	315	gGa/gCa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2194536	2194536	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	54	482	0	ENST00000398665.3:c.611A>T	p.Lys204Met	p.K204M	ENST00000398665	NM_032482.2	204	aAg/aTg																																																																														
JAK3	0	MSKCC	GRCh37	19	17949122	17949122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	140	691	0	ENST00000458235.1:c.1519C>A	p.Gln507Lys	p.Q507K	ENST00000458235	NM_000215.3	507	Cag/Aag																																																																														
CRKL	0	MSKCC	GRCh37	22	21272281	21272281	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	78	380	0	ENST00000354336.3:c.59C>G	p.Ser20Cys	p.S20C	ENST00000354336	NM_005207.3	20	tCt/tGt																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73110172	73110172	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	84	591	0	ENST00000356692.5:c.382-2A>C		p.X128_splice	ENST00000356692		128																																																																															
HIST1H3F	0	MSKCC	GRCh37	6	26250661	26250661	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	106	500	0	ENST00000446824.2:c.173C>A	p.Ser58Ter	p.S58*	ENST00000446824	NM_021018.2	58	tCg/tAg																																																																														
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	142	621	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0027849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	12	401	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	125	530	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191385	185191385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	200	683	0	ENST00000265026.3:c.2266G>A	p.Asp756Asn	p.D756N	ENST00000265026	NM_004721.4	756	Gac/Aac																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	56	383	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	98	705	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
PGR	0	MSKCC	GRCh37	11	100933432	100933432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	81	346	0	ENST00000325455.5:c.1958C>A	p.Ala653Asp	p.A653D	ENST00000325455	NM_001202474.3	653	gCt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	101	630	1	ENST00000269305.4:c.994-2A>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
RAB35	0	MSKCC	GRCh37	12	120535178	120535178	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	36	301	0	ENST00000229340.5:c.478-1G>C		p.X160_splice	ENST00000229340	NM_006861.6	160																																																																															
IRS2	0	MSKCC	GRCh37	13	110437359	110437359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	12	45	0	ENST00000375856.3:c.1042G>T	p.Ala348Ser	p.A348S	ENST00000375856	NM_003749.2	348	Gcc/Tcc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16097873	16097873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	26	194	0	ENST00000268712.3:c.11C>T	p.Ser4Leu	p.S4L	ENST00000268712	NM_006311.3	4	tCa/tTa																																																																														
NF1	0	MSKCC	GRCh37	17	29553499	29553499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	69	578	0	ENST00000358273.4:c.2048C>G	p.Ala683Gly	p.A683G	ENST00000358273	NM_001042492.2	683	gCc/gGc																																																																														
NF1	0	MSKCC	GRCh37	17	29657360	29657360	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	79	698	0	ENST00000358273.4:c.5656T>G	p.Leu1886Val	p.L1886V	ENST00000358273	NM_001042492.2	1886	Tta/Gta																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272495	15272495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	67	699	1	ENST00000263388.2:c.5944G>A	p.Glu1982Lys	p.E1982K	ENST00000263388	NM_000435.2	1982	Gag/Aag																																																																														
BRD4	0	MSKCC	GRCh37	19	15376350	15376350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201267392		P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1260	191	853	1	ENST00000263377.2:c.664C>T	p.Pro222Ser	p.P222S	ENST00000263377	NM_058243.2	222	Cct/Tct																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31374336	31374336	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	148	599	0	ENST00000328111.2:c.335C>G	p.Ser112Cys	p.S112C	ENST00000328111	NM_006892.3	112	tCc/tGc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67590490	67590490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	56	362	1	ENST00000274335.5:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000274335		518	Gag/Aag																																																																														
ROS1	0	MSKCC	GRCh37	6	117658367	117658367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	53	759	0	ENST00000368508.3:c.5216G>A	p.Ser1739Asn	p.S1739N	ENST00000368508	NM_002944.2	1739	aGc/aAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274189	10274189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	158	387	1	ENST00000330684.3:c.80C>T	p.Ala27Val	p.A27V	ENST00000330684	NM_001134407.1	27	gCg/gTg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843749	156843749	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	586	722	1	ENST00000524377.1:c.1175C>T	p.Pro392Leu	p.P392L	ENST00000524377	NM_002529.3	392	cCt/cTt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144121	11144121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	245	627	1	ENST00000344626.4:c.3702C>A	p.Phe1234Leu	p.F1234L	ENST00000344626	NM_003072.3	1234	ttC/ttA																																																																														
SETD2	0	MSKCC	GRCh37	3	47205366	47205366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	165	361	0	ENST00000409792.3:c.49G>C	p.Asp17His	p.D17H	ENST00000409792	NM_014159.6	17	Gac/Cac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	65	536	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	180	603	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	100	511	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	91	298	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	204	529	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468282	50468282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	84	528	0	ENST00000331340.3:c.1517C>T	p.Ser506Leu	p.S506L	ENST00000331340	NM_006060.4	506	tCg/tTg																																																																														
ROS1	0	MSKCC	GRCh37	6	117687289	117687289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	91	406	0	ENST00000368508.3:c.2762C>A	p.Ala921Asp	p.A921D	ENST00000368508	NM_002944.2	921	gCc/gAc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739470	145739470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	92	559	0	ENST00000428558.2:c.1900G>A	p.Val634Met	p.V634M	ENST00000428558	NM_004260.3	634	Gtg/Atg																																																																														
RBM10	0	MSKCC	GRCh37	X	47034427	47034427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	319	289	1	ENST00000329236.7:c.281G>A	p.Arg94Gln	p.R94Q	ENST00000329236	NM_001204466.1	94	cGg/cAg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	189	564	2	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39584352	39584352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	104	338	2	ENST00000262039.4:c.1017G>T	p.Trp339Cys	p.W339C	ENST00000262039	NM_002647.2	339	tgG/tgT																																																																														
SOS1	0	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	151	394	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610162	10610162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	219	654	0	ENST00000171111.5:c.548A>G	p.Asn183Ser	p.N183S	ENST00000171111	NM_203500.1	183	aAt/aGt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52597433	52597433	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	134	543	0	ENST00000394830.3:c.3877G>T	p.Glu1293Ter	p.E1293*	ENST00000394830	NM_018313.4	1293	Gag/Tag																																																																														
FAT1	0	MSKCC	GRCh37	4	187538867	187538867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	98	220	0	ENST00000441802.2:c.8873T>C	p.Ile2958Thr	p.I2958T	ENST00000441802	NM_005245.3	2958	aTa/aCa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528776	8528776	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	87	310	0	ENST00000356435.5:c.356A>T	p.Asp119Val	p.D119V	ENST00000356435		119	gAt/gTt																																																																														
RB1	0	MSKCC	GRCh37	13	48955563	48955600	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCTTGCATGGCTCTCAGTAAGTAGCTAAATAATTGAA	CCCTTGCATGGCTCTCAGTAAGTAGCTAAATAATTGAA	-			P-0027855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	98	472	0	ENST00000267163.4:c.1679_1695+21del		p.X560_splice	ENST00000267163	NM_000321.2	560																																																																															
ARID1A	0	MSKCC	GRCh37	1	27056308	27056308	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	70	440	0	ENST00000324856.7:c.1304del	p.Gln435ArgfsTer184	p.Q435Rfs*184	ENST00000324856	NM_006015.4	435	cAg/cg																																																																														
NF1	0	MSKCC	GRCh37	17	29550345	29550467	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAACTAAGCTTCTCTAAACTTGTATTCATTATGGGAGAATGCCATTCTTATGTCTGGTTATATCTGCATTAGGTTATTGATGATGCTAGTAACAATGAACTTTATGTTACTGCAGCTCACA	AAAAACTAAGCTTCTCTAAACTTGTATTCATTATGGGAGAATGCCATTCTTATGTCTGGTTATATCTGCATTAGGTTATTGATGATGCTAGTAACAATGAACTTTATGTTACTGCAGCTCACA	-			P-0027856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	25	35	0	ENST00000358273.4:c.1722-115_1729del		p.X574_splice	ENST00000358273	NM_001042492.2	574																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67589586	67589595	+	protein_altering_variant	In_Frame_Del	DEL	ATGAATATAA	ATGAATATAA	C			P-0027856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	35	327	0	ENST00000274335.5:c.1349_1358delinsC	p.His450_Asn453delinsPro	p.H450_N453delinsP	ENST00000274335		450	cATGAATATAAc/cCc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9776535	9776535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	108	815	0	ENST00000377346.4:c.638C>T	p.Pro213Leu	p.P213L	ENST00000377346	NM_005026.3	213	cCg/cTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16257572	16257572	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	102	702	0	ENST00000375759.3:c.4837A>G	p.Thr1613Ala	p.T1613A	ENST00000375759	NM_015001.2	1613	Aca/Gca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	15	86	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099480	27099480	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	70	384	0	ENST00000324856.7:c.3715+2T>C		p.X1239_splice	ENST00000324856	NM_006015.4	1239																																																																															
MPL	0	MSKCC	GRCh37	1	43817931	43817931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3820551		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	96	670	1	ENST00000372470.3:c.1610G>A	p.Arg537Gln	p.R537Q	ENST00000372470	NM_005373.2	537	cGg/cAg																																																																														
MUTYH	0	MSKCC	GRCh37	1	45797230	45797230	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	71	571	0	ENST00000372115.3:c.1145-2A>G		p.X382_splice	ENST00000372115	NM_001048171.1	382																																																																															
MUTYH	0	MSKCC	GRCh37	1	45797710	45797710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	99	736	2	ENST00000372115.3:c.940G>A	p.Asp314Asn	p.D314N	ENST00000372115	NM_001048171.1	314	Gac/Aac																																																																														
RAD54L	0	MSKCC	GRCh37	1	46743505	46743507	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	58	551	0	ENST00000371975.4:c.1889_1891del	p.Lys630del	p.K630del	ENST00000371975	NM_003579.3	629	gAGAag/gag																																																																														
SDHC	0	MSKCC	GRCh37	1	161326487	161326487	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	81	569	0	ENST00000367975.2:c.262T>C	p.Ser88Pro	p.S88P	ENST00000367975	NM_003001.3	88	Tcg/Ccg																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88659789	88659789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	174	566	2	ENST00000372037.3:c.441delT	p.Phe147LeufsTer18	p.F147Lfs*18	ENST00000372037	NM_004329.2	146	Ttt/tt																																																																														
MYOD1	0	MSKCC	GRCh37	11	17742865	17742865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	73	625	3	ENST00000250003.3:c.773G>A	p.Arg258His	p.R258H	ENST00000250003	NM_002478.4	258	cGc/cAc																																																																														
MEN1	0	MSKCC	GRCh37	11	64577137	64577137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	118	741	1	ENST00000337652.1:c.445G>A	p.Gly149Ser	p.G149S	ENST00000337652	NM_130803.2	149	Ggt/Agt																																																																														
PGR	0	MSKCC	GRCh37	11	100999479	100999479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	70	810	0	ENST00000325455.5:c.323G>T	p.Ser108Ile	p.S108I	ENST00000325455	NM_001202474.3	108	aGc/aTc																																																																														
ATM	0	MSKCC	GRCh37	11	108204662	108204664	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	30	455	0	ENST00000278616.4:c.7980_7982del	p.Glu2660del	p.E2660del	ENST00000278616	NM_000051.3	2659	ttAGAa/tta																																																																														
KDM5A	0	MSKCC	GRCh37	12	430192	430192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	47	503	2	ENST00000399788.2:c.2510C>T	p.Pro837Leu	p.P837L	ENST00000399788	NM_001042603.1	837	cCg/cTg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244454	46244454	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	84	551	0	ENST00000334344.6:c.2552del	p.Pro851HisfsTer4	p.P851Hfs*4	ENST00000334344	NM_152641.2	850	Ccc/cc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416545	49416545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	89	604	0	ENST00000301067.7:c.16166G>T	p.Arg5389Leu	p.R5389L	ENST00000301067	NM_003482.3	5389	cGg/cTg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	111	821	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856064	111856064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	54	337	0	ENST00000341259.2:c.115C>T	p.Arg39Trp	p.R39W	ENST00000341259	NM_005475.2	39	Cgg/Tgg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	78	675	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
POLE	0	MSKCC	GRCh37	12	133219860	133219860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	92	661	0	ENST00000320574.5:c.4501G>A	p.Gly1501Arg	p.G1501R	ENST00000320574	NM_006231.2	1501	Ggg/Agg																																																																														
POLE	0	MSKCC	GRCh37	12	133235942	133235942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	85	567	0	ENST00000320574.5:c.3214G>A	p.Ala1072Thr	p.A1072T	ENST00000320574	NM_006231.2	1072	Gca/Aca																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914860	32914860	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	83	508	0	ENST00000380152.3:c.6368A>G	p.Glu2123Gly	p.E2123G	ENST00000380152		2123	gAa/gGa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30066895	30066895	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	49	611	0	ENST00000331968.5:c.2236A>G	p.Thr746Ala	p.T746A	ENST00000331968	NM_002742.2	746	Acc/Gcc																																																																														
SPRED1	0	MSKCC	GRCh37	15	38591743	38591743	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	66	411	0	ENST00000299084.4:c.205del	p.Met69TrpfsTer52	p.M69Wfs*52	ENST00000299084	NM_152594.2	68	Aaa/aa																																																																														
MGA	0	MSKCC	GRCh37	15	41989087	41989087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	92	771	0	ENST00000219905.7:c.1879C>T	p.Arg627Ter	p.R627*	ENST00000219905	NM_001164273.1	627	Cga/Tga																																																																														
B2M	0	MSKCC	GRCh37	15	45007675	45007675	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	67	474	0	ENST00000558401.1:c.122A>T	p.Asn41Ile	p.N41I	ENST00000558401	NM_004048.2	41	aAt/aTt																																																																														
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	89	563	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99434566	99434566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	74	500	0	ENST00000268035.6:c.653C>T	p.Thr218Met	p.T218M	ENST00000268035	NM_000875.3	218	aCg/aTg																																																																														
AXIN1	0	MSKCC	GRCh37	16	348211	348211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	112	687	1	ENST00000262320.3:c.1295del	p.Pro432GlnfsTer48	p.P432Qfs*48	ENST00000262320	NM_003502.3	432	cCa/ca																																																																														
SLX4	0	MSKCC	GRCh37	16	3640044	3640044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	132	878	0	ENST00000294008.3:c.3595G>A	p.Ala1199Thr	p.A1199T	ENST00000294008	NM_032444.2	1199	Gca/Aca																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786767	3786767	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	65	583	0	ENST00000262367.5:c.4444T>C	p.Tyr1482His	p.Y1482H	ENST00000262367	NM_004380.2	1482	Tac/Cac																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	56	463	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934825	9934825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	95	707	0	ENST00000330684.3:c.1465G>T	p.Val489Phe	p.V489F	ENST00000330684	NM_001134407.1	489	Gtt/Ttt																																																																														
ERCC4	0	MSKCC	GRCh37	16	14020559	14020559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	80	638	0	ENST00000311895.7:c.530A>G	p.His177Arg	p.H177R	ENST00000311895	NM_005236.2	177	cAt/cGt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831936	72831936	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181722888		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	108	868	3	ENST00000268489.5:c.4645G>A	p.Val1549Ile	p.V1549I	ENST00000268489	NM_006885.3	1549	Gtc/Atc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	33	307	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
PLCG2	0	MSKCC	GRCh37	16	81914559	81914559	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	61	488	0	ENST00000359376.3:c.692+1G>A		p.X231_splice	ENST00000359376	NM_002661.3	231																																																																															
ANKRD11	0	MSKCC	GRCh37	16	89346433	89346433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	71	709	0	ENST00000301030.4:c.6517G>A	p.Val2173Ile	p.V2173I	ENST00000301030	NM_001256183.1	2173	Gtc/Atc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346961	89346961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	52	377	1	ENST00000301030.4:c.5989G>A	p.Ala1997Thr	p.A1997T	ENST00000301030	NM_001256183.1	1997	Gcg/Acg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15964937	15964937	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	103	649	0	ENST00000268712.3:c.5659T>G	p.Phe1887Val	p.F1887V	ENST00000268712	NM_006311.3	1887	Ttt/Gtt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	68	496	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
CDK12	0	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	49	362	0	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41219706	41219706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	85	471	0	ENST00000357654.3:c.4993G>A	p.Val1665Met	p.V1665M	ENST00000357654	NM_007294.3	1665	Gtg/Atg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	179	600	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CD79B	0	MSKCC	GRCh37	17	62007580	62007580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	113	701	3	ENST00000392795.3:c.287G>A	p.Arg96His	p.R96H	ENST00000392795	NM_001039933.1	96	cGc/cAc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	64	413	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573505	48573506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	44	421	0	ENST00000342988.3:c.94_95delAG	p.Ser32Ter	p.S32*	ENST00000342988	NM_005359.5	30	gGA/g																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604668	48604668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	52	457	1	ENST00000342988.3:c.1490G>A	p.Arg497His	p.R497H	ENST00000342988	NM_005359.5	497	cGc/cAc																																																																														
BCL2	0	MSKCC	GRCh37	18	60985439	60985439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	100	741	1	ENST00000333681.4:c.461G>A	p.Gly154Asp	p.G154D	ENST00000333681		154	gGt/gAt																																																																														
TCF3	0	MSKCC	GRCh37	19	1627410	1627410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	107	769	0	ENST00000344749.5:c.314G>A	p.Arg105Gln	p.R105Q	ENST00000344749	NM_001136139.2	105	cGg/cAg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610153	10610153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	123	753	1	ENST00000171111.5:c.557G>A	p.Gly186Asp	p.G186D	ENST00000171111	NM_203500.1	186	gGc/gAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11145789	11145789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	85	636	0	ENST00000344626.4:c.4151C>T	p.Thr1384Met	p.T1384M	ENST00000344626	NM_003072.3	1384	aCg/aTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272513	15272513	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	70	576	0	ENST00000263388.2:c.5926del	p.Leu1976TyrfsTer36	p.L1976Yfs*36	ENST00000263388	NM_000435.2	1976	Cta/ta																																																																														
UPF1	0	MSKCC	GRCh37	19	18966819	18966819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	108	796	0	ENST00000262803.5:c.1630C>T	p.Leu544Phe	p.L544F	ENST00000262803	NM_002911.3	544	Ctc/Ttc																																																																														
UPF1	0	MSKCC	GRCh37	19	18976541	18976541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	25	735	1	ENST00000262803.5:c.3191C>A	p.Pro1064His	p.P1064H	ENST00000262803	NM_002911.3	1064	cCt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	282	846	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224135	36224135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	68	570	0	ENST00000222270.7:c.6685C>A	p.Pro2229Thr	p.P2229T	ENST00000222270	NM_014727.1	2229	Ccc/Acc																																																																														
ERF	0	MSKCC	GRCh37	19	42752873	42752873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	88	816	0	ENST00000222329.4:c.1391delC	p.Pro464LeufsTer67	p.P464Lfs*67	ENST00000222329	NM_006494.2	464	cCt/ct																																																																														
BBC3	0	MSKCC	GRCh37	19	47731488	47731488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	12	60	0	ENST00000449228.1:c.304C>T	p.Arg102Cys	p.R102C	ENST00000449228	NM_001127240.2	102	Cgt/Tgt																																																																														
BBC3	0	MSKCC	GRCh37	19	47735818	47735818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	111	718	0	ENST00000449228.1:c.42G>T	p.Gln14His	p.Q14H	ENST00000449228	NM_001127240.2	14	caG/caT																																																																														
POLD1	0	MSKCC	GRCh37	19	50905061	50905061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	207	565	0	ENST00000440232.2:c.347delC	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	115	Ccc/cc																																																																														
POLD1	0	MSKCC	GRCh37	19	50906475	50906475	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	83	683	0	ENST00000440232.2:c.1136A>C	p.Gln379Pro	p.Q379P	ENST00000440232	NM_002691.3	379	cAg/cCg																																																																														
MYCN	0	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	80	868	3	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	80	512	2	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																																																														
PMS1	0	MSKCC	GRCh37	2	190682742	190682742	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	42	340	0	ENST00000441310.2:c.419-1G>T		p.X140_splice	ENST00000441310	NM_000534.4	140																																																																															
CASP8	0	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	97	673	3	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251685	212251685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	53	392	0	ENST00000342788.4:c.3374C>T	p.Thr1125Ile	p.T1125I	ENST00000342788	NM_005235.2	1125	aCc/aTc																																																																														
BARD1	0	MSKCC	GRCh37	2	215645527	215645527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	88	657	0	ENST00000260947.4:c.1071A>G	p.Ile357Met	p.I357M	ENST00000260947	NM_000465.2	357	atA/atG																																																																														
INHA	0	MSKCC	GRCh37	2	220439569	220439569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	88	603	1	ENST00000243786.2:c.422G>A	p.Gly141Asp	p.G141D	ENST00000243786	NM_002191.3	141	gGc/gAc																																																																														
PAK7	0	MSKCC	GRCh37	20	9538380	9538380	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	69	372	0	ENST00000353224.5:c.1618A>C	p.Met540Leu	p.M540L	ENST00000353224	NM_177990.2	540	Atg/Ctg																																																																														
AURKA	0	MSKCC	GRCh37	20	54958198	54958198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	59	589	0	ENST00000312783.6:c.409C>T	p.Arg137Cys	p.R137C	ENST00000312783	NM_198436.1	137	Cgc/Tgc																																																																														
EP300	0	MSKCC	GRCh37	22	41564765	41564765	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	94	683	2	ENST00000263253.7:c.4066C>T	p.Arg1356Ter	p.R1356*	ENST00000263253	NM_001429.3	1356	Cga/Tga																																																																														
EP300	0	MSKCC	GRCh37	22	41566478	41566478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	98	620	0	ENST00000263253.7:c.4355C>T	p.Pro1452Leu	p.P1452L	ENST00000263253	NM_001429.3	1452	cCt/cTt																																																																														
EP300	0	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	208	743	2	ENST00000263253.7:c.6970delC	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713565	30713565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	80	542	0	ENST00000359013.4:c.965T>C	p.Ile322Thr	p.I322T	ENST00000359013	NM_001024847.2	322	aTc/aCc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	644	1	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																														
BAP1	0	MSKCC	GRCh37	3	52436841	52436841	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	70	718	0	ENST00000460680.1:c.1937A>G	p.Tyr646Cys	p.Y646C	ENST00000460680	NM_004656.3	646	tAt/tGt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52613121	52613121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	85	664	2	ENST00000394830.3:c.3407G>A	p.Gly1136Asp	p.G1136D	ENST00000394830	NM_018313.4	1136	gGc/gAc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71027093	71027093	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200629338		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	81	547	1	ENST00000318789.4:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000318789	NM_032682.5	412	Gcc/Acc																																																																														
WWTR1	0	MSKCC	GRCh37	3	149290678	149290678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	105	705	0	ENST00000360632.3:c.541T>C	p.Ser181Pro	p.S181P	ENST00000360632	NM_015472.4	181	Tcc/Ccc																																																																														
BCL6	0	MSKCC	GRCh37	3	187440319	187440319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	99	609	3	ENST00000232014.4:c.2048C>T	p.Ala683Val	p.A683V	ENST00000232014	NM_001130845.1	683	gCc/gTc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808398	1808398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	88	946	0	ENST00000260795.2:c.2156G>A	p.Cys719Tyr	p.C719Y	ENST00000260795		719	tGc/tAc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1932444	1932444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	111	663	1	ENST00000382891.5:c.1502G>A	p.Arg501His	p.R501H	ENST00000382891	NM_133335.3	501	cGc/cAc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361115	66361115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	48	367	0	ENST00000273854.3:c.1057G>A	p.Ala353Thr	p.A353T	ENST00000273854	NM_004439.5	353	Gca/Aca																																																																														
EIF4E	0	MSKCC	GRCh37	4	99823066	99823066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	86	448	0	ENST00000280892.6:c.146C>T	p.Ala49Val	p.A49V	ENST00000280892	NM_001130678.1	49	gCt/gTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	84	611	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
IL7R	0	MSKCC	GRCh37	5	35871206	35871206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	78	506	0	ENST00000303115.3:c.428C>T	p.Ala143Val	p.A143V	ENST00000303115	NM_002185.3	143	gCc/gTc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	38	360	0	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	48	332	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	192	795	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RASA1	0	MSKCC	GRCh37	5	86672839	86672840	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	59	399	0	ENST00000274376.6:c.2329_2330del	p.Glu777AsnfsTer6	p.E777Nfs*6	ENST00000274376	NM_002890.2	776	AGa/a																																																																														
CSF1R	0	MSKCC	GRCh37	5	149460583	149460583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	67	627	0	ENST00000286301.3:c.54G>T	p.Gln18His	p.Q18H	ENST00000286301	NM_005211.3	18	caG/caT																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149500480	149500480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	91	745	1	ENST00000261799.4:c.2557C>T	p.Arg853Trp	p.R853W	ENST00000261799	NM_002609.3	853	Cgg/Tgg																																																																														
FLT4	0	MSKCC	GRCh37	5	180052992	180052992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	89	811	0	ENST00000261937.6:c.1298G>T	p.Ser433Ile	p.S433I	ENST00000261937	NM_182925.4	433	aGc/aTc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323240	31323240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	81	563	0	ENST00000412585.2:c.749A>G	p.Gln250Arg	p.Q250R	ENST00000412585	NM_005514.6	250	cAg/cGg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32181563	32181563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	92	812	0	ENST00000375023.3:c.2222G>T	p.Gly741Val	p.G741V	ENST00000375023	NM_004557.3	741	gGc/gTc																																																																														
TAP2	0	MSKCC	GRCh37	6	32803446	32803446	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	129	719	0	ENST00000374899.4:c.713T>G	p.Leu238Arg	p.L238R	ENST00000374899	NM_018833.2	238	cTc/cGc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805537	32805539	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	109	794	0	ENST00000374899.4:c.472_474del	p.Phe158del	p.F158del	ENST00000374899	NM_018833.2	158	TTC/-																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	183	692	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
DAXX	0	MSKCC	GRCh37	6	33289197	33289197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	84	534	0	ENST00000374542.5:c.355C>T	p.Arg119Trp	p.R119W	ENST00000374542	NM_001141970.1	119	Cgg/Tgg																																																																														
ESR1	0	MSKCC	GRCh37	6	152415703	152415703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	61	518	0	ENST00000206249.3:c.1553G>T	p.Ser518Ile	p.S518I	ENST00000206249	NM_000125.3	518	aGt/aTt																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468306	50468306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	89	541	0	ENST00000331340.3:c.1541A>G	p.His514Arg	p.H514R	ENST00000331340	NM_006060.4	514	cAc/cGc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	88	661	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
XRCC2	7516	MSKCC	GRCh37	7	152346220	152346220	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	96	701	7	ENST00000359321.1:c.350del	p.Leu117TrpfsTer17	p.L117Wfs*17	ENST00000359321	NM_005431.1	117	tTg/tg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	54	413	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	73	757	6	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	55	609	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98242284	98242284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	81	702	0	ENST00000331920.6:c.1034G>A	p.Gly345Asp	p.G345D	ENST00000331920	NM_000264.3	345	gGc/gAc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900238	101900238	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201021249		P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	56	498	0	ENST00000374994.4:c.672G>A	p.Trp224Ter	p.W224*	ENST00000374994	NM_004612.2	224	tgG/tgA																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139418325	139418325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	83	841	2	ENST00000277541.6:c.247G>A	p.Ala83Thr	p.A83T	ENST00000277541	NM_017617.3	83	Gca/Aca																																																																														
BCOR	0	MSKCC	GRCh37	X	39932953	39932953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	59	581	0	ENST00000378444.4:c.1646G>A	p.Gly549Asp	p.G549D	ENST00000378444	NM_001123385.1	549	gGc/gAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47030503	47030503	+	intron_variant	Intron	SNP	C	C	T			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	90	726	1	ENST00000329236.7:c.201+1606C>T		p.*67*	ENST00000329236	NM_001204466.1	67																																																																															
RBM10	0	MSKCC	GRCh37	X	47038535	47038535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	62	759	1	ENST00000329236.7:c.466T>C	p.Cys156Arg	p.C156R	ENST00000329236	NM_001204466.1	156	Tgc/Cgc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	75	675	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222308	53222309	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	100	793	0	ENST00000375401.3:c.4523dup	p.Ala1509CysfsTer75	p.A1509Cfs*75	ENST00000375401	NM_004187.3	1508	cct/ccCt																																																																														
AR	0	MSKCC	GRCh37	X	66766454	66766454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	59	373	0	ENST00000374690.3:c.1466G>A	p.Gly489Glu	p.G489E	ENST00000374690	NM_000044.3	489	gGg/gAg																																																																														
MED12	0	MSKCC	GRCh37	X	70356450	70356450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	88	829	1	ENST00000374080.3:c.5345G>A	p.Arg1782His	p.R1782H	ENST00000374080		1782	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25380260	25380265	+	protein_altering_variant	In_Frame_Ins	INS	TGCACT	TGCACT	GTACTGGTCAAG			P-0027858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	79	618	0	ENST00000256078.4:c.193_198delinsCTTGACCAGTAC	p.Ser65_Ala66delinsLeuAspGlnTyr	p.S65_A66delinsLDQY	ENST00000256078	NM_033360.2	65	AGTGCA/CTTGACCAGTAC																																																																														
TP53	0	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0027991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	82	742	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38949877	38949877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	72	411	0	ENST00000357387.3:c.4073T>A	p.Val1358Glu	p.V1358E	ENST00000357387	NM_152756.3	1358	gTg/gAg																																																																														
DAXX	0	MSKCC	GRCh37	6	33286824	33286824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	48	564	0	ENST00000374542.5:c.2113C>T	p.Arg705Trp	p.R705W	ENST00000374542	NM_001141970.1	705	Cgg/Tgg																																																																														
SUFU	0	MSKCC	GRCh37	10	104309776	104309776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			644	210	823	0	ENST00000369902.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000369902	NM_016169.3	123	Cgt/Tgt																																																																														
TBX3	0	MSKCC	GRCh37	12	115118708	115118708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	150	596	2	ENST00000257566.3:c.633C>A	p.Asn211Lys	p.N211K	ENST00000257566	NM_016569.3	211	aaC/aaA																																																																														
FLT1	0	MSKCC	GRCh37	13	28880885	28880885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	56	587	0	ENST00000282397.4:c.3745C>G	p.Leu1249Val	p.L1249V	ENST00000282397	NM_002019.4	1249	Ctg/Gtg																																																																														
FLT1	0	MSKCC	GRCh37	13	28959097	28959097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	136	507	0	ENST00000282397.4:c.2041G>C	p.Asp681His	p.D681H	ENST00000282397	NM_002019.4	681	Gac/Cac																																																																														
BRCA2	0	MSKCC	GRCh37	13	32893389	32893389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	176	605	0	ENST00000380152.3:c.243C>G	p.Phe81Leu	p.F81L	ENST00000380152		81	ttC/ttG																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	369	519	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68842716	68842716	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	156	740	1	ENST00000261769.5:c.652G>T	p.Glu218Ter	p.E218*	ENST00000261769	NM_004360.3	218	Gag/Tag																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984731	11984731	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			134	69	346	0	ENST00000353533.5:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000353533	NM_003010.3	93	Caa/Taa																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029511	16029511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	25	536	0	ENST00000268712.3:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000268712	NM_006311.3	507	Cga/Tga																																																																														
CUL3	0	MSKCC	GRCh37	2	225360568	225360568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	66	258	0	ENST00000264414.4:c.1823G>C	p.Arg608Thr	p.R608T	ENST00000264414	NM_003590.4	608	aGa/aCa																																																																														
TET2	0	MSKCC	GRCh37	4	106164748	106164748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			390	98	466	0	ENST00000380013.4:c.3616G>A	p.Glu1206Lys	p.E1206K	ENST00000380013	NM_001127208.2	1206	Gaa/Aaa																																																																														
TEK	0	MSKCC	GRCh37	9	27157837	27157837	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	30	521	0	ENST00000380036.4:c.61G>C	p.Glu21Gln	p.E21Q	ENST00000380036	NM_000459.3	21	Gaa/Caa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400002	139400002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	104	853	2	ENST00000277541.6:c.4346G>A	p.Cys1449Tyr	p.C1449Y	ENST00000277541	NM_017617.3	1449	tGc/tAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0026445-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	375	380	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577548	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0026445-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	186	394	2	ENST00000269305.4:c.733_734delinsTT	p.Gly245Phe	p.G245F	ENST00000269305	NM_001126112.2	245	GGc/TTc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458606	120458606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026445-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	180	393	0	ENST00000256646.2:c.6739G>T	p.Val2247Phe	p.V2247F	ENST00000256646	NM_024408.3	2247	Gtc/Ttc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118352439	118352444	+	inframe_deletion	In_Frame_Del	DEL	AGAAAG	AGAAAG	-			P-0026445-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	66	241	0	ENST00000534358.1:c.3649_3654del	p.Glu1217_Lys1218del	p.E1217_K1218del	ENST00000534358	NM_005933.3	1215	aAGAAAGag/aag																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032042	26032042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026445-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	99	296	0	ENST00000244661.2:c.247C>T	p.Leu83Phe	p.L83F	ENST00000244661	NM_003537.3	83	Ctt/Ttt																																																																														
MITF	0	MSKCC	GRCh37	3	69998232	69998232	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026777-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			543	162	545	0	ENST00000352241.4:c.793T>G	p.Tyr265Asp	p.Y265D	ENST00000352241	NM_198159.2	265	Tat/Gat																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	513	535	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47162216	47162216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	78	342	0	ENST00000409792.3:c.3910G>T	p.Gly1304Cys	p.G1304C	ENST00000409792	NM_014159.6	1304	Ggt/Tgt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40899088	40899088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	254	530	0	ENST00000373198.4:c.2182A>G	p.Met728Val	p.M728V	ENST00000373198	NM_133170.3	728	Atg/Gtg																																																																														
PLK2	0	MSKCC	GRCh37	5	57750513	57750514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0027693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	107	508	0	ENST00000274289.3:c.1953_1954dup	p.Ser652TyrfsTer7	p.S652Yfs*7	ENST00000274289	NM_006622.3	652	tct/tATct																																																																														
PREX2	0	MSKCC	GRCh37	8	68864771	68864771	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	148	458	1	ENST00000288368.4:c.141+1G>A		p.X47_splice	ENST00000288368	NM_024870.2	47																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	84	700	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	104	657	1	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
RNF43	0	MSKCC	GRCh37	17	56440637	56440637	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	80	843	2	ENST00000407977.2:c.581G>A	p.Trp194Ter	p.W194*	ENST00000407977		194	tGg/tAg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214831	36214831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	78	1025	0	ENST00000222270.7:c.3257A>G	p.Tyr1086Cys	p.Y1086C	ENST00000222270	NM_014727.1	1086	tAt/tGt																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056196	26056219	+	inframe_deletion	In_Frame_Del	DEL	GTTTTCTTAGCGCTCTTCTTCGGA	GTTTTCTTAGCGCTCTTCTTCGGA	-			P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	85	568	0	ENST00000343677.2:c.438_461del	p.Ser150_Lys157del	p.S150_K157del	ENST00000343677	NM_005319.3	146	acTCCGAAGAAGAGCGCTAAGAAAACa/aca																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974723	21974738	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCTCCAGCAGCG	CCCGCCTCCAGCAGCG	-			P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	42	505	0	ENST00000304494.5:c.89_104delCGCTGCTGGAGGCGGG	p.Ala30GlyfsTer18	p.A30Gfs*18	ENST00000304494	NM_000077.4	30	gCGCTGCTGGAGGCGGGg/gg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974723	21974738	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCTCCAGCAGCG	CCCGCCTCCAGCAGCG	-			P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	42	505	0	ENST00000304494.5:c.89_104delCGCTGCTGGAGGCGGG	p.Ala30GlyfsTer18	p.A30Gfs*18	ENST00000304494	NM_000077.4	30	gCGCTGCTGGAGGCGGGg/gg																																																																														
ABL1	0	MSKCC	GRCh37	9	133750272	133750272	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	52	697	1	ENST00000318560.5:c.1103A>G	p.Asn368Ser	p.N368S	ENST00000318560	NM_005157.4	368	aAc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	56	512	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	132	525	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	54	202	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	62	474	1	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																														
ATRX	0	MSKCC	GRCh37	X	76875919	76875919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	75	591	0	ENST00000373344.5:c.5216G>A	p.Arg1739Gln	p.R1739Q	ENST00000373344	NM_000489.3	1739	cGa/cAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088768	27088768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	63	611	0	ENST00000324856.7:c.2377A>G	p.Met793Val	p.M793V	ENST00000324856	NM_006015.4	793	Atg/Gtg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720702	89720702	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	28	130	0	ENST00000371953.3:c.853G>T	p.Glu285Ter	p.E285*	ENST00000371953	NM_000314.4	285	Gaa/Taa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920404	114920404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	69	496	0	ENST00000543371.1:c.1345G>C	p.Ala449Pro	p.A449P	ENST00000543371	NM_001198531.1	449	Gca/Cca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	168	439	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	181	390	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
GNAS	0	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	147	332	3	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	90	219	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
CARD11	0	MSKCC	GRCh37	7	2976744	2976744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	531	657	0	ENST00000396946.4:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000396946	NM_032415.4	423	cGg/cAg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114799872	114799872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	270	509	0	ENST00000543371.1:c.539C>T	p.Pro180Leu	p.P180L	ENST00000543371	NM_001198531.1	180	cCg/cTg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356239	66356239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	232	571	0	ENST00000273854.3:c.1258G>A	p.Gly420Ser	p.G420S	ENST00000273854	NM_004439.5	420	Ggc/Agc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480408	89480408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	145	313	1	ENST00000336596.2:c.2245G>T	p.Ala749Ser	p.A749S	ENST00000336596	NM_005233.5	749	Gct/Tct																																																																														
ARID2	0	MSKCC	GRCh37	12	46243482	46243484	+	stop_gained	Nonsense_Mutation	ONP	ATC	ATC	TTT			P-0027697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	97	469	0	ENST00000334344.6:c.1835_1837delinsTTT	p.Tyr612_Gln613delinsPheTer	p.Y612_Q613delinsF*	ENST00000334344	NM_152641.2	612	tATCag/tTTTag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	311	573	7	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
RB1	0	MSKCC	GRCh37	13	49030367	49030368	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	177	291	5	ENST00000267163.4:c.1848dupA	p.Gly617ArgfsTer36	p.G617Rfs*36	ENST00000267163	NM_000321.2	614	-/A																																																																														
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	177	346	4	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8404576	8404576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146844299		P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	110	225	4	ENST00000356435.5:c.4171G>A	p.Ala1391Thr	p.A1391T	ENST00000356435		1391	Gca/Aca																																																																														
INHBA	0	MSKCC	GRCh37	7	41729390	41729390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	266	424	4	ENST00000242208.4:c.1139G>A	p.Gly380Asp	p.G380D	ENST00000242208	NM_002192.2	380	gGc/gAc																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870961	12870961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	145	299	1	ENST00000228872.4:c.188A>T	p.Asp63Val	p.D63V	ENST00000228872	NM_004064.3	63	gAt/gTt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7976111	7976111	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	296	513	9	ENST00000319144.4:c.2084T>C	p.Ile695Thr	p.I695T	ENST00000319144	NM_001139.2	695	aTt/aCt																																																																														
ERF	0	MSKCC	GRCh37	19	42754493	42754493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	312	545	10	ENST00000222329.4:c.247C>T	p.Arg83Trp	p.R83W	ENST00000222329	NM_006494.2	83	Cgg/Tgg																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778103	27778104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	255	440	4	ENST00000369163.2:c.254dup	p.Gln86ProfsTer21	p.Q86Pfs*21	ENST00000369163	NM_003536.2	84	-/T																																																																														
NTRK3	0	MSKCC	GRCh37	15	88476301	88476301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	78	490	0	ENST00000360948.2:c.1831G>A	p.Asp611Asn	p.D611N	ENST00000360948	NM_001012338.2	611	Gac/Aac																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980872	40980872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	122	337	0	ENST00000373198.4:c.1614G>C	p.Gln538His	p.Q538H	ENST00000373198	NM_133170.3	538	caG/caC																																																																														
SMYD3	0	MSKCC	GRCh37	1	246670438	246670438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	60	348	0	ENST00000388985.4:c.82G>A	p.Glu28Lys	p.E28K	ENST00000388985		28	Gag/Aag																																																																														
RAD50	0	MSKCC	GRCh37	5	131953930	131953930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	32	294	0	ENST00000265335.6:c.3333G>A	p.Met1111Ile	p.M1111I	ENST00000265335		1111	atG/atA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0027727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	144	210	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0027727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	306	374	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781324	3781326	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0027727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	294	545	0	ENST00000262367.5:c.5039_5041delCCT	p.Ser1680del	p.S1680del	ENST00000262367	NM_004380.2	1680	tCCTtg/ttg																																																																														
IRS2	0	MSKCC	GRCh37	13	110436440	110436440	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	304	433	0	ENST00000375856.3:c.1961del	p.Met654SerfsTer3	p.M654Sfs*3	ENST00000375856	NM_003749.2	654	aTg/ag																																																																														
BAP1	0	MSKCC	GRCh37	3	52437840	52437840	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	308	474	0	ENST00000460680.1:c.1321C>T	p.Gln441Ter	p.Q441*	ENST00000460680	NM_004656.3	441	Cag/Tag																																																																														
BAP1	0	MSKCC	GRCh37	3	52443864	52443864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	268	409	1	ENST00000460680.1:c.31G>A	p.Asp11Asn	p.D11N	ENST00000460680	NM_004656.3	11	Gac/Aac																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938404	44938404	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	265	178	0	ENST00000377967.4:c.2952C>G	p.Phe984Leu	p.F984L	ENST00000377967	NM_021140.2	984	ttC/ttG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	100	298	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	132	381	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	154	373	1	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga																																																																														
ATM	0	MSKCC	GRCh37	11	108143306	108143306	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	106	294	0	ENST00000278616.4:c.3125T>C	p.Leu1042Pro	p.L1042P	ENST00000278616	NM_000051.3	1042	cTa/cCa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265982	41266276	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAA	AATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAA	-			P-0027728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	20	68	0	ENST00000349496.5:c.14-34_241+33del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
PDGFRA	0	MSKCC	GRCh37	4	55152095	55152106	+	inframe_deletion	In_Frame_Del	DEL	ATCATGCATGAT	ATCATGCATGAT	-			P-0027730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	310	437	0	ENST00000257290.5:c.2527_2538del	p.Ile843_Asp846del	p.I843_D846del	ENST00000257290	NM_006206.4	843	ATCATGCATGAT/-																																																																														
CSDE1	0	MSKCC	GRCh37	1	115266564	115266564	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	255	403	0	ENST00000438362.2:c.1951delC	p.Leu651Ter	p.L651*	ENST00000438362	NM_001242891.1	651	Ctg/tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	214	511	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499520	89499520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	49	235	0	ENST00000336596.2:c.2690G>T	p.Arg897Met	p.R897M	ENST00000336596	NM_005233.5	897	aGg/aTg																																																																														
POLE	0	MSKCC	GRCh37	12	133226046	133226046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	102	474	0	ENST00000320574.5:c.3851G>T	p.Arg1284Leu	p.R1284L	ENST00000320574	NM_006231.2	1284	cGg/cTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023916	27023916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	27	59	1	ENST00000324856.7:c.1022C>T	p.Ala341Val	p.A341V	ENST00000324856	NM_006015.4	341	gCg/gTg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36935320	36935321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	175	411	0	ENST00000361632.4:c.1406dup	p.Ser469ArgfsTer5	p.S469Rfs*5	ENST00000361632		469	agc/agGc																																																																														
DDR2	0	MSKCC	GRCh37	1	162724481	162724481	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	164	376	0	ENST00000367921.3:c.253G>T	p.Glu85Ter	p.E85*	ENST00000367921	NM_006182.2	85	Gag/Tag																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724337	112724337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	175	471	1	ENST00000369452.4:c.221G>T	p.Arg74Leu	p.R74L	ENST00000369452	NM_007373.3	74	cGg/cTg																																																																														
FGF4	0	MSKCC	GRCh37	11	69588865	69588865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	290	397	0	ENST00000168712.1:c.371G>A	p.Gly124Asp	p.G124D	ENST00000168712	NM_002007.2	124	gGc/gAc																																																																														
ATM	0	MSKCC	GRCh37	11	108188146	108188146	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	179	309	0	ENST00000278616.4:c.6245A>T	p.Lys2082Ile	p.K2082I	ENST00000278616	NM_000051.3	2082	aAa/aTa																																																																														
RAD51B	0	MSKCC	GRCh37	14	68878140	68878140	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	77	223	0	ENST00000487270.1:c.854-1G>T		p.X285_splice	ENST00000487270	NM_133509.3	285																																																																															
SRC	0	MSKCC	GRCh37	20	36026167	36026168	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	416	514	1	ENST00000358208.4:c.769_770delinsTT	p.Gly257Phe	p.G257F	ENST00000358208		257	GGc/TTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739104	40739104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	265	365	0	ENST00000373198.4:c.3180G>T	p.Glu1060Asp	p.E1060D	ENST00000373198	NM_133170.3	1060	gaG/gaT																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944539	40944539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	72	368	0	ENST00000373198.4:c.1963G>T	p.Ala655Ser	p.A655S	ENST00000373198	NM_133170.3	655	Gcc/Tcc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89448571	89448571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	121	388	0	ENST00000336596.2:c.1535G>T	p.Arg512Leu	p.R512L	ENST00000336596	NM_005233.5	512	cGa/cTa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920418	134920418	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	121	408	0	ENST00000398015.3:c.2233C>G	p.Leu745Val	p.L745V	ENST00000398015	NM_004441.4	745	Ctg/Gtg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138400848	138400848	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	58	390	0	ENST00000289153.2:c.2465T>A	p.Leu822Ter	p.L822*	ENST00000289153	NM_006219.2	822	tTg/tAg																																																																														
TP63	0	MSKCC	GRCh37	3	189612122	189612122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	151	406	0	ENST00000264731.3:c.1874C>T	p.Thr625Ile	p.T625I	ENST00000264731	NM_003722.4	625	aCa/aTa																																																																														
SDHA	0	MSKCC	GRCh37	5	225612	225612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	80	220	0	ENST00000264932.6:c.391G>T	p.Asp131Tyr	p.D131Y	ENST00000264932	NM_004168.2	131	Gac/Tac																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149513239	149513239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	87	464	0	ENST00000261799.4:c.844G>T	p.Glu282Ter	p.E282*	ENST00000261799	NM_002609.3	282	Gag/Tag																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149515139	149515139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	209	388	0	ENST00000261799.4:c.343C>T	p.Arg115Trp	p.R115W	ENST00000261799	NM_002609.3	115	Cgg/Tgg																																																																														
ROS1	0	MSKCC	GRCh37	6	117710528	117710528	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	58	153	0	ENST00000368508.3:c.1744C>G	p.Leu582Val	p.L582V	ENST00000368508	NM_002944.2	582	Ctt/Gtt																																																																														
FGFR1	0	MSKCC	GRCh37	8	38315002	38315002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	117	441	0	ENST00000425967.3:c.62G>T	p.Cys21Phe	p.C21F	ENST00000425967	NM_001174067.1	21	tGt/tTt																																																																														
RB1	0	MSKCC	GRCh37	13	48878162	48878162	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	59	95	0	ENST00000267163.4:c.116del	p.Pro39ArgfsTer26	p.P39Rfs*26	ENST00000267163	NM_000321.2	38	ggC/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7577109	7578131	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAGTAAGGAGATTCCCCGCCGGGGATGTGATGAGAGGTGGATGGGTAGTAGTATGGAAGAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCAACCTAGGAGATAACACAGGCCCAAGATGAGGCCAGTGCGCCTTGGGGAGACCTGTGGCAAGCAGGGGAGGCCTTTTTTTTTTTTTTTTGAGATGGAATCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAAGCTCCACCGCCCAGGTTCACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCAGCACCACGCCCGGCTAATTTTTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCGTTAGCCAGGATGGTCTCGATCTCCCAACCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAA	AGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAGTAAGGAGATTCCCCGCCGGGGATGTGATGAGAGGTGGATGGGTAGTAGTATGGAAGAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTGGCTCCTGACCTGGAGTCTTCCAGTGTGATGATGGTGAGGATGGGCCTCCGGTTCATGCCGCCCATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCAACCTAGGAGATAACACAGGCCCAAGATGAGGCCAGTGCGCCTTGGGGAGACCTGTGGCAAGCAGGGGAGGCCTTTTTTTTTTTTTTTTGAGATGGAATCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAAGCTCCACCGCCCAGGTTCACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCAGCACCACGCCCGGCTAATTTTTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCGTTAGCCAGGATGGTCTCGATCTCCCAACCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAA	-			P-0027732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	195	441	0	ENST00000269305.4:c.672+46_829del		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
NF1	0	MSKCC	GRCh37	17	29486112	29486112	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	190	226	0	ENST00000358273.4:c.288+1G>T		p.X96_splice	ENST00000358273	NM_001042492.2	96																																																																															
NF1	0	MSKCC	GRCh37	17	29664851	29664852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAA			P-0027732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	89	238	0	ENST00000358273.4:c.6657_6658insGGAA	p.Ile2220GlyfsTer23	p.I2220Gfs*23	ENST00000358273	NM_001042492.2	2219	-/GGAA																																																																														
APC	0	MSKCC	GRCh37	5	112176530	112176530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	44	301	0	ENST00000257430.4:c.5239A>G	p.Met1747Val	p.M1747V	ENST00000257430	NM_000038.5	1747	Atg/Gtg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341090	8341090	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	111	315	0	ENST00000356435.5:c.5126G>T	p.Arg1709Ile	p.R1709I	ENST00000356435		1709	aGa/aTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			400	661	925	1	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4101031	4101031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	427	624	2	ENST00000262948.5:c.691C>T	p.Arg231Cys	p.R231C	ENST00000262948	NM_030662.3	231	Cgc/Tgc																																																																														
PARP1	0	MSKCC	GRCh37	1	226550815	226550815	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1404	256	690	1	ENST00000366794.5:c.2833A>T	p.Lys945Ter	p.K945*	ENST00000366794	NM_001618.3	945	Aag/Tag																																																																														
FLT3	0	MSKCC	GRCh37	13	28624345	28624348	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0022593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			720	162	653	0	ENST00000241453.7:c.626_629del	p.Glu209ValfsTer20	p.E209Vfs*20	ENST00000241453	NM_004119.2	209	gAAAGt/gt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243482	41243482	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			746	336	820	0	ENST00000357654.3:c.4066C>T	p.Gln1356Ter	p.Q1356*	ENST00000357654	NM_007294.3	1356	Caa/Taa																																																																														
TEK	0	MSKCC	GRCh37	9	27209173	27209173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	228	791	0	ENST00000380036.4:c.2630G>A	p.Cys877Tyr	p.C877Y	ENST00000380036	NM_000459.3	877	tGt/tAt																																																																														
ESR1	0	MSKCC	GRCh37	6	152129208	152129208	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022593-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1997	299	942	1	ENST00000206249.3:c.161A>T	p.Tyr54Phe	p.Y54F	ENST00000206249	NM_000125.3	54	tAc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	348	518	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	308	581	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	176	423	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	200	438	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	219	424	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	308	576	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
AR	0	MSKCC	GRCh37	X	66765159	66765188	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	43	270	0	ENST00000374690.3:c.210_239delGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	p.Gln71_Gln80del	p.Q71_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468357	89468357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	150	197	0	ENST00000336596.2:c.1891G>A	p.Glu631Lys	p.E631K	ENST00000336596	NM_005233.5	631	Gaa/Aaa																																																																														
ELF3	0	MSKCC	GRCh37	1	201980416	201980417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAGG			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	294	680	3	ENST00000359651.3:c.154_158dup	p.Thr54ArgfsTer103	p.T54Rfs*103	ENST00000359651		51	ttg/ttGGAGGg																																																																														
PARP1	0	MSKCC	GRCh37	1	226578228	226578228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	312	552	0	ENST00000366794.5:c.500G>A	p.Arg167Lys	p.R167K	ENST00000366794	NM_001618.3	167	aGg/aAg																																																																														
KIT	0	MSKCC	GRCh37	4	55524201	55524201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	269	489	1	ENST00000288135.5:c.20C>A	p.Ala7Asp	p.A7D	ENST00000288135	NM_000222.2	7	gCc/gAc																																																																														
KIT	0	MSKCC	GRCh37	4	55593598	55593598	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	170	471	0	ENST00000288135.5:c.1664T>A	p.Val555Glu	p.V555E	ENST00000288135	NM_000222.2	555	gTa/gAa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528267	157528267	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	274	586	2	ENST00000346085.5:c.5992G>C	p.Glu1998Gln	p.E1998Q	ENST00000346085	NM_020732.3	1998	Gag/Cag																																																																														
AMER1	0	MSKCC	GRCh37	X	63411119	63411119	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	229	518	1	ENST00000330258.3:c.2048C>A	p.Ser683Ter	p.S683*	ENST00000330258	NM_152424.3	683	tCa/tAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	14	586	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0027576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	28	903	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59760711	59760711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	23	822	0	ENST00000259008.2:c.3696G>C	p.Lys1232Asn	p.K1232N	ENST00000259008	NM_032043.2	1232	aaG/aaC																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213917	66213917	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	21	453	0	ENST00000273854.3:c.2513del	p.Gly838GlufsTer13	p.G838Efs*13	ENST00000273854	NM_004439.5	838	gGa/ga																																																																														
AMER1	0	MSKCC	GRCh37	X	63413040	63413040	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	33	474	0	ENST00000330258.3:c.127G>T	p.Glu43Ter	p.E43*	ENST00000330258	NM_152424.3	43	Gag/Tag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696642	47696642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	225	624	0	ENST00000347630.2:c.306C>G	p.Phe102Leu	p.F102L	ENST00000347630	NM_001007230.1	102	ttC/ttG																																																																														
MGA	0	MSKCC	GRCh37	15	42041845	42041846	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	38	680	0	ENST00000219905.7:c.6041dup	p.Ala2015CysfsTer9	p.A2015Cfs*9	ENST00000219905	NM_001164273.1	2014	gct/gCct																																																																														
KMT2C	0	MSKCC	GRCh37	7	151864230	151864230	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0027711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	108	326	0	ENST00000262189.6:c.9750+1G>C		p.X3250_splice	ENST00000262189	NM_170606.2	3250																																																																															
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	328	837	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	405	654	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	138	287	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	172	498	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	169	519	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																														
EP300	0	MSKCC	GRCh37	22	41562637	41562637	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	164	464	0	ENST00000263253.7:c.3841C>T	p.Arg1281Ter	p.R1281*	ENST00000263253	NM_001429.3	1281	Cga/Tga																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2489788	2489788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	417	680	0	ENST00000355716.4:c.185G>A	p.Arg62His	p.R62H	ENST00000355716	NM_003820.2	62	cGt/cAt																																																																														
FLT4	0	MSKCC	GRCh37	5	180036938	180036938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	281	832	0	ENST00000261937.6:c.3774C>A	p.Phe1258Leu	p.F1258L	ENST00000261937	NM_182925.4	1258	ttC/ttA																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786705	3786705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1282	262	880	0	ENST00000262367.5:c.4506G>C	p.Trp1502Cys	p.W1502C	ENST00000262367	NM_004380.2	1502	tgG/tgC																																																																														
TP53	0	MSKCC	GRCh37	17	7578385	7578386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	321	686	1	ENST00000269305.4:c.544dup	p.Cys182LeufsTer4	p.C182Lfs*4	ENST00000269305	NM_001126112.2	182	tgc/tTgc																																																																														
RASA1	0	MSKCC	GRCh37	5	86681205	86681205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0027713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	127	383	0	ENST00000274376.6:c.2846A>C	p.Lys949Thr	p.K949T	ENST00000274376	NM_002890.2	949	aAg/aCg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	332	557	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852248	63852248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145564601		P-0027715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	55	584	1	ENST00000279873.7:c.3026C>T	p.Ala1009Val	p.A1009V	ENST00000279873	NM_032199.2	1009	gCg/gTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187549364	187549364	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111886222		P-0027715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	54	724	3	ENST00000441802.2:c.4754C>T	p.Thr1585Met	p.T1585M	ENST00000441802	NM_005245.3	1585	aCg/aTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845814	151845814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	42	826	2	ENST00000262189.6:c.13198C>T	p.Arg4400Trp	p.R4400W	ENST00000262189	NM_170606.2	4400	Cgg/Tgg																																																																														
IKBKE	9641	MSKCC	GRCh37	1	206653405	206653405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs782442134		P-0027715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	55	853	0	ENST00000367120.3:c.1289G>A	p.Arg430Gln	p.R430Q	ENST00000367120	NM_014002.3	430	cGg/cAg																																																																														
PTPN11	0	MSKCC	GRCh37	12	112915481	112915481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	30	727	2	ENST00000351677.2:c.880G>A	p.Asp294Asn	p.D294N	ENST00000351677	NM_002834.3	294	Gat/Aat																																																																														
MGA	0	MSKCC	GRCh37	15	41961204	41961204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	46	478	2	ENST00000219905.7:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000219905	NM_001164273.1	38	Caa/Taa																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22006075	22006075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	37	697	0	ENST00000276925.6:c.328G>C	p.Asp110His	p.D110H	ENST00000276925	NM_004936.3	110	Gat/Cat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	780	710	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	889	982	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112175876	112175876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	227	359	0	ENST00000257430.4:c.4585C>T	p.Gln1529Ter	p.Q1529*	ENST00000257430	NM_000038.5	1529	Cag/Tag																																																																														
CDK4	0	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	663	627	1	ENST00000257904.6:c.71G>A	p.Arg24His	p.R24H	ENST00000257904	NM_000075.3	24	cGt/cAt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	214	634	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
RAB35	0	MSKCC	GRCh37	12	120541715	120541715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	629	803	2	ENST00000229340.5:c.142C>T	p.Arg48Trp	p.R48W	ENST00000229340	NM_006861.6	48	Cgg/Tgg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18656259	18656259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201569993		P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	131	714	1	ENST00000266497.5:c.2938C>T	p.His980Tyr	p.H980Y	ENST00000266497		980	Cat/Tat																																																																														
BRD4	0	MSKCC	GRCh37	19	15349918	15349918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	610	671	1	ENST00000263377.2:c.3734C>T	p.Ala1245Val	p.A1245V	ENST00000263377	NM_058243.2	1245	gCc/gTc																																																																														
CARD11	0	MSKCC	GRCh37	7	2977594	2977594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1576	807	987	1	ENST00000396946.4:c.1090C>T	p.Arg364Cys	p.R364C	ENST00000396946	NM_032415.4	364	Cgc/Tgc																																																																														
CD79B	0	MSKCC	GRCh37	17	62007575	62007575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	345	1015	0	ENST00000392795.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000392795	NM_001039933.1	98	Gaa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8331723	8331723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	473	488	0	ENST00000356435.5:c.5393G>A	p.Arg1798Gln	p.R1798Q	ENST00000356435		1798	cGa/cAa																																																																														
STK19	0	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1827	679	1009	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
PTPRS	0	MSKCC	GRCh37	19	5243965	5243965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	943	778	1	ENST00000357368.4:c.1517C>T	p.Ser506Phe	p.S506F	ENST00000357368	NM_002850.3	506	tCc/tTc																																																																														
SPEN	0	MSKCC	GRCh37	1	16265890	16265890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	517	836	1	ENST00000375759.3:c.10963C>T	p.Pro3655Ser	p.P3655S	ENST00000375759	NM_015001.2	3655	Ccc/Tcc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56486550	56486550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	640	858	0	ENST00000267101.3:c.1129C>T	p.Pro377Ser	p.P377S	ENST00000267101	NM_001982.3	377	Cct/Tct																																																																														
HNF1A	0	MSKCC	GRCh37	12	121416758	121416758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1457	1033	1043	2	ENST00000257555.6:c.187G>A	p.Gly63Arg	p.G63R	ENST00000257555		63	Ggg/Agg																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66737004	66737004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	369	680	0	ENST00000307102.5:c.527G>T	p.Gly176Val	p.G176V	ENST00000307102	NM_002755.3	176	gGc/gTc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210843	2210843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	419	512	0	ENST00000398665.3:c.1340C>T	p.Ser447Phe	p.S447F	ENST00000398665	NM_032482.2	447	tCc/tTc																																																																														
AXL	0	MSKCC	GRCh37	19	41754478	41754478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144179986		P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	1003	957	5	ENST00000301178.4:c.1597C>T	p.Arg533Trp	p.R533W	ENST00000301178	NM_021913.4	533	Cgg/Tgg																																																																														
TOP1	0	MSKCC	GRCh37	20	39746936	39746937	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	317	695	0	ENST00000361337.2:c.1950_1950+1delinsAA		p.X650_splice	ENST00000361337	NM_003286.2	650																																																																															
PTPRT	0	MSKCC	GRCh37	20	40739123	40739123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	411	714	0	ENST00000373198.4:c.3161G>A	p.Gly1054Asp	p.G1054D	ENST00000373198	NM_133170.3	1054	gGc/gAc																																																																														
TET2	0	MSKCC	GRCh37	4	106157087	106157087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	449	689	0	ENST00000380013.4:c.1988C>T	p.Ser663Phe	p.S663F	ENST00000380013	NM_001127208.2	663	tCc/tTc																																																																														
ESR1	0	MSKCC	GRCh37	6	152163857	152163857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	238	667	1	ENST00000206249.3:c.578C>T	p.Ser193Leu	p.S193L	ENST00000206249	NM_000125.3	193	tCa/tTa																																																																														
PREX2	0	MSKCC	GRCh37	8	69000021	69000021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	213	880	1	ENST00000288368.4:c.2090C>T	p.Ser697Phe	p.S697F	ENST00000288368	NM_024870.2	697	tCt/tTt																																																																														
PREX2	0	MSKCC	GRCh37	8	69129892	69129892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	530	415	1	ENST00000288368.4:c.4646C>T	p.Ala1549Val	p.A1549V	ENST00000288368	NM_024870.2	1549	gCc/gTc																																																																														
NBN	0	MSKCC	GRCh37	8	90976721	90976721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	59	597	0	ENST00000265433.3:c.911C>T	p.Pro304Leu	p.P304L	ENST00000265433	NM_002485.4	304	cCt/cTt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98211431	98211431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	761	735	0	ENST00000331920.6:c.3724G>A	p.Glu1242Lys	p.E1242K	ENST00000331920	NM_000264.3	1242	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	87	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	139	525	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112173847	112173848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0027737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	77	299	0	ENST00000257430.4:c.2563_2564dup	p.Arg856AsnfsTer6	p.R856Nfs*6	ENST00000257430	NM_000038.5	852	-/GA																																																																														
MITF	0	MSKCC	GRCh37	3	70014170	70014170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	71	523	1	ENST00000352241.4:c.1334C>T	p.Thr445Met	p.T445M	ENST00000352241	NM_198159.2	445	aCg/aTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099329	27099333	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCC	ATGCC	-			P-0027737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	137	450	2	ENST00000324856.7:c.3566_3570del	p.Asp1189ValfsTer2	p.D1189Vfs*2	ENST00000324856	NM_006015.4	1189	gATGCC/g																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	103	416	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	117	385	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0027739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	76	414	0				ENST00000310581	NM_198253.2																																																																																
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	68	214	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ESR1	0	MSKCC	GRCh37	6	152265535	152265535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	78	415	0	ENST00000206249.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000206249	NM_000125.3	330	Gag/Aag																																																																														
SOX17	64321	MSKCC	GRCh37	8	55370868	55370868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757855527		P-0027739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	185	466	0	ENST00000297316.4:c.170G>A	p.Gly57Glu	p.G57E	ENST00000297316	NM_022454.3	57	gGg/gAg																																																																														
MPL	0	MSKCC	GRCh37	1	43804995	43804995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	72	376	0	ENST00000372470.3:c.445G>A	p.Glu149Lys	p.E149K	ENST00000372470	NM_005373.2	149	Gaa/Aaa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434747	49434747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	134	567	0	ENST00000301067.7:c.6806C>T	p.Ser2269Phe	p.S2269F	ENST00000301067	NM_003482.3	2269	tCc/tTc																																																																														
MSI1	0	MSKCC	GRCh37	12	120784117	120784117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	60	677	0	ENST00000257552.2:c.868C>T	p.Pro290Ser	p.P290S	ENST00000257552	NM_002442.3	290	Ccc/Tcc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151835885	151835885	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	84	319	0	ENST00000262189.6:c.14639A>G	p.Glu4880Gly	p.E4880G	ENST00000262189	NM_170606.2	4880	gAa/gGa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500810	8500811	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0027739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	67	383	1	ENST00000356435.5:c.2071_2072delinsTT	p.Thr691Leu	p.T691L	ENST00000356435		691	ACa/TTa																																																																														
MTOR	0	MSKCC	GRCh37	1	11272422	11272422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	132	419	0	ENST00000361445.4:c.3508C>T	p.Arg1170Cys	p.R1170C	ENST00000361445	NM_004958.3	1170	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	181	424	0	ENST00000324856.7:c.1650dupC	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099914	27099914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	152	402	0	ENST00000324856.7:c.3793G>A	p.Gly1265Ser	p.G1265S	ENST00000324856	NM_006015.4	1265	Ggc/Agc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101282	27101282	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199776442		P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	163	411	1	ENST00000324856.7:c.4564G>A	p.Ala1522Thr	p.A1522T	ENST00000324856	NM_006015.4	1522	Gcc/Acc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101375	27101375	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	171	393	0	ENST00000324856.7:c.4661del	p.Pro1554HisfsTer11	p.P1554Hfs*11	ENST00000324856	NM_006015.4	1553	Ccc/cc																																																																														
SESN2	0	MSKCC	GRCh37	1	28598252	28598252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	219	573	0	ENST00000253063.3:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000253063	NM_031459.4	75	cGa/cAa																																																																														
SMYD3	0	MSKCC	GRCh37	1	246518359	246518359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	139	313	1	ENST00000388985.4:c.202G>A	p.Ala68Thr	p.A68T	ENST00000388985		68	Gcc/Acc																																																																														
RET	0	MSKCC	GRCh37	10	43604533	43604533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	183	487	2	ENST00000355710.3:c.1118C>T	p.Ala373Val	p.A373V	ENST00000355710	NM_020975.4	373	gCg/gTg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63829504	63829504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	155	384	0	ENST00000279873.7:c.1147G>A	p.Gly383Ser	p.G383S	ENST00000279873	NM_032199.2	383	Ggt/Agt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	131	356	0	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
HRAS	0	MSKCC	GRCh37	11	533860	533860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	220	602	0	ENST00000311189.7:c.196G>A	p.Ala66Thr	p.A66T	ENST00000311189		66	Gcc/Acc																																																																														
WT1	0	MSKCC	GRCh37	11	32421570	32421570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	155	373	0	ENST00000332351.3:c.1022G>T	p.Ser341Ile	p.S341I	ENST00000332351	NM_024426.4	341	aGc/aTc																																																																														
PGR	0	MSKCC	GRCh37	11	100999059	100999059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	120	410	1	ENST00000325455.5:c.743C>T	p.Ala248Val	p.A248V	ENST00000325455	NM_001202474.3	248	gCg/gTg																																																																														
CBL	0	MSKCC	GRCh37	11	119149358	119149358	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	118	296	0	ENST00000264033.4:c.1366G>T	p.Asp456Tyr	p.D456Y	ENST00000264033	NM_005188.3	456	Gat/Tat																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	129	288	1	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885578	111885578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	180	529	0	ENST00000341259.2:c.1355C>G	p.Ala452Gly	p.A452G	ENST00000341259	NM_005475.2	452	gCc/gGc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112326	115112326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	74	143	0	ENST00000257566.3:c.1414G>A	p.Ala472Thr	p.A472T	ENST00000257566	NM_016569.3	472	Gcg/Acg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	127	414	2	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
SETD8	0	MSKCC	GRCh37	12	123874019	123874019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	26	36	0	ENST00000330479.4:c.50C>T	p.Ala17Val	p.A17V	ENST00000330479	NM_020382.3	17	gCg/gTg																																																																														
SETD8	0	MSKCC	GRCh37	12	123875244	123875244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	36	100	0	ENST00000330479.4:c.200G>A	p.Arg67His	p.R67H	ENST00000330479	NM_020382.3	67	cGt/cAt																																																																														
FLT1	0	MSKCC	GRCh37	13	28913316	28913316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	382	477	0	ENST00000282397.4:c.2477G>A	p.Arg826Lys	p.R826K	ENST00000282397	NM_002019.4	826	aGa/aAa																																																																														
FLT1	0	MSKCC	GRCh37	13	29005429	29005429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	106	240	0	ENST00000282397.4:c.832G>A	p.Val278Ile	p.V278I	ENST00000282397	NM_002019.4	278	Gta/Ata																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514821	103514821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112825485		P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	187	281	0	ENST00000355739.4:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000355739	NM_000123.3	441	cCg/cTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110434736	110434736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	383	496	2	ENST00000375856.3:c.3665C>T	p.Pro1222Leu	p.P1222L	ENST00000375856	NM_003749.2	1222	cCg/cTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110434766	110434766	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	384	522	0	ENST00000375856.3:c.3635del	p.Pro1212LeufsTer47	p.P1212Lfs*47	ENST00000375856	NM_003749.2	1212	cCt/ct																																																																														
SPRED1	0	MSKCC	GRCh37	15	38614440	38614440	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	104	282	0	ENST00000299084.4:c.208-2A>G		p.X70_splice	ENST00000299084	NM_152594.2	70																																																																															
NTRK3	0	MSKCC	GRCh37	15	88576240	88576240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	118	313	0	ENST00000360948.2:c.1433C>T	p.Ala478Val	p.A478V	ENST00000360948	NM_001012338.2	478	gCc/gTc																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	203	553	1	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																														
CYLD	0	MSKCC	GRCh37	16	50813825	50813825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	217	540	0	ENST00000398568.2:c.1379C>A	p.Pro460His	p.P460H	ENST00000398568	NM_001042412.1	460	cCt/cAt																																																																														
CBFB	865	MSKCC	GRCh37	16	67063359	67063359	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	132	307	1	ENST00000412916.2:c.54del	p.Phe18LeufsTer4	p.F18Lfs*4	ENST00000412916		17	Ttt/tt																																																																														
CTCF	0	MSKCC	GRCh37	16	67662385	67662385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	248	502	0	ENST00000264010.4:c.1631G>A	p.Arg544His	p.R544H	ENST00000264010	NM_006565.3	544	cGc/cAc																																																																														
CDH1	0	MSKCC	GRCh37	16	68844140	68844140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	198	465	0	ENST00000261769.5:c.728A>G	p.Glu243Gly	p.E243G	ENST00000261769	NM_004360.3	243	gAg/gGg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822240	72822240	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	220	530	0	ENST00000268489.5:c.9935T>C	p.Val3312Ala	p.V3312A	ENST00000268489	NM_006885.3	3312	gTa/gCa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993885	72993885	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	110	324	0	ENST00000268489.5:c.160A>T	p.Arg54Trp	p.R54W	ENST00000268489	NM_006885.3	54	Agg/Tgg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346424	89346424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	172	471	2	ENST00000301030.4:c.6526G>A	p.Gly2176Ser	p.G2176S	ENST00000301030	NM_001256183.1	2176	Ggt/Agt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347762	89347762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	139	396	1	ENST00000301030.4:c.5188G>A	p.Asp1730Asn	p.D1730N	ENST00000301030	NM_001256183.1	1730	Gat/Aat																																																																														
FLCN	0	MSKCC	GRCh37	17	17127243	17127243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	124	381	0	ENST00000285071.4:c.611del	p.Ala204GlyfsTer19	p.A204Gfs*19	ENST00000285071	NM_144997.5	204	gCg/gg																																																																														
RARA	0	MSKCC	GRCh37	17	38487510	38487510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	118	342	0	ENST00000254066.5:c.40G>A	p.Gly14Arg	p.G14R	ENST00000254066	NM_000964.3	14	Ggg/Agg																																																																														
STAT3	0	MSKCC	GRCh37	17	40468917	40468917	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	85	176	0	ENST00000264657.5:c.2147C>T	p.Thr716Met	p.T716M	ENST00000264657	NM_139276.2	716	aCg/aTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	312	416	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740506	58740506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	142	471	2	ENST00000305921.3:c.1411C>A	p.Pro471Thr	p.P471T	ENST00000305921	NM_003620.3	471	Cca/Aca																																																																														
RPTOR	0	MSKCC	GRCh37	17	78865613	78865613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	155	371	0	ENST00000306801.3:c.2077G>A	p.Ala693Thr	p.A693T	ENST00000306801	NM_020761.2	693	Gcc/Acc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5243923	5243923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	107	305	0	ENST00000357368.4:c.1559C>T	p.Thr520Met	p.T520M	ENST00000357368	NM_002850.3	520	aCg/aTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10251482	10251482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	170	442	1	ENST00000340748.4:c.3450del	p.Leu1151CysfsTer29	p.L1151Cfs*29	ENST00000340748		1150	ggG/gg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170474	11170474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	232	527	0	ENST00000344626.4:c.4681C>T	p.Arg1561Trp	p.R1561W	ENST00000344626	NM_003072.3	1561	Cgg/Tgg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15289862	15289862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	236	581	1	ENST00000263388.2:c.3692G>A	p.Arg1231His	p.R1231H	ENST00000263388	NM_000435.2	1231	cGt/cAt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15300240	15300240	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	203	476	0	ENST00000263388.2:c.1037-1G>A		p.X346_splice	ENST00000263388	NM_000435.2	346																																																																															
UPF1	0	MSKCC	GRCh37	19	18974365	18974365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	157	514	2	ENST00000262803.5:c.2719C>T	p.Arg907Cys	p.R907C	ENST00000262803	NM_002911.3	907	Cgt/Tgt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210845	36210845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	236	596	1	ENST00000222270.7:c.596G>A	p.Arg199Gln	p.R199Q	ENST00000222270	NM_014727.1	199	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	223	651	4	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																														
KMT2B	0	MSKCC	GRCh37	19	36218425	36218425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	186	417	1	ENST00000222270.7:c.4204C>T	p.Arg1402Ter	p.R1402*	ENST00000222270	NM_014727.1	1402	Cga/Tga																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223191	36223191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	288	675	2	ENST00000222270.7:c.5741G>A	p.Arg1914His	p.R1914H	ENST00000222270	NM_014727.1	1914	cGt/cAt																																																																														
AXL	0	MSKCC	GRCh37	19	41762376	41762377	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	161	438	0	ENST00000301178.4:c.2063_2064del	p.Val688GlyfsTer31	p.V688Gfs*31	ENST00000301178	NM_021913.4	686	GTg/g																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	193	563	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
POLD1	0	MSKCC	GRCh37	19	50910319	50910319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	206	577	2	ENST00000440232.2:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000440232	NM_002691.3	525	cGg/cAg																																																																														
MSH2	0	MSKCC	GRCh37	2	47672797	47672797	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	95	353	0	ENST00000233146.2:c.1386+1G>A		p.X462_splice	ENST00000233146	NM_000251.2	462																																																																															
MSH6	0	MSKCC	GRCh37	2	48026782	48026782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	139	322	0	ENST00000234420.5:c.1660C>T	p.Arg554Cys	p.R554C	ENST00000234420	NM_000179.2	554	Cgt/Tgt																																																																														
MSH6	0	MSKCC	GRCh37	2	48026852	48026852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	112	293	0	ENST00000234420.5:c.1730G>A	p.Arg577His	p.R577H	ENST00000234420	NM_000179.2	577	cGc/cAc																																																																														
TMEM127	0	MSKCC	GRCh37	2	96919780	96919781	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	131	425	0	ENST00000258439.3:c.480_482dup	p.Gln160dup	p.Q160dup	ENST00000258439	NM_001193304.2	160	cat/caGCAt																																																																														
TMEM127	0	MSKCC	GRCh37	2	96920700	96920700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	199	400	0	ENST00000258439.3:c.280C>T	p.Arg94Trp	p.R94W	ENST00000258439	NM_001193304.2	94	Cgg/Tgg																																																																														
CTLA4	0	MSKCC	GRCh37	2	204735354	204735354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	60	175	0	ENST00000302823.3:c.155G>A	p.Gly52Asp	p.G52D	ENST00000302823	NM_005214.4	52	gGc/gAc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566818	212566818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	98	220	0	ENST00000342788.4:c.1363G>A	p.Ala455Thr	p.A455T	ENST00000342788	NM_005235.2	455	Gca/Aca																																																																														
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	153	435	1	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																														
INHA	0	MSKCC	GRCh37	2	220439742	220439742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	183	481	0	ENST00000243786.2:c.595C>T	p.Arg199Cys	p.R199C	ENST00000243786	NM_002191.3	199	Cgc/Tgc																																																																														
CUL3	0	MSKCC	GRCh37	2	225370741	225370741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	126	358	1	ENST00000264414.4:c.1138C>A	p.Leu380Ile	p.L380I	ENST00000264414	NM_003590.4	380	Ctc/Atc																																																																														
IRS1	0	MSKCC	GRCh37	2	227661726	227661726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	137	351	1	ENST00000305123.5:c.1729G>A	p.Val577Met	p.V577M	ENST00000305123	NM_005544.2	577	Gtg/Atg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	205	523	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	110	157	1	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
TOP1	0	MSKCC	GRCh37	20	39742680	39742680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	105	304	0	ENST00000361337.2:c.1523G>A	p.Arg508His	p.R508H	ENST00000361337	NM_003286.2	508	cGt/cAt																																																																														
AURKA	0	MSKCC	GRCh37	20	54961526	54961526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	265	378	0	ENST00000312783.6:c.106C>T	p.Pro36Ser	p.P36S	ENST00000312783	NM_198436.1	36	Cca/Tca																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24167410	24167410	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	141	417	0	ENST00000263121.7:c.796-2A>G		p.X266_splice	ENST00000263121	NM_003073.3	266																																																																															
NF2	0	MSKCC	GRCh37	22	30057302	30057302	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	136	384	0	ENST00000338641.4:c.784C>T	p.Arg262Ter	p.R262*	ENST00000338641	NM_000268.3	262	Cga/Tga																																																																														
NF2	0	MSKCC	GRCh37	22	30077462	30077462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	145	312	0	ENST00000338641.4:c.1609G>A	p.Glu537Lys	p.E537K	ENST00000338641	NM_000268.3	537	Gag/Aag																																																																														
RAF1	0	MSKCC	GRCh37	3	12627233	12627233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	169	397	0	ENST00000251849.4:c.1483C>T	p.Arg495Cys	p.R495C	ENST00000251849	NM_002880.3	495	Cgc/Tgc																																																																														
MST1R	0	MSKCC	GRCh37	3	49928834	49928834	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	196	502	0	ENST00000296474.3:c.3532C>T	p.Arg1178Trp	p.R1178W	ENST00000296474	NM_002447.2	1178	Cgg/Tgg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	100	305	0	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																														
TP63	0	MSKCC	GRCh37	3	189612212	189612212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	153	356	0	ENST00000264731.3:c.1964G>A	p.Arg655Gln	p.R655Q	ENST00000264731	NM_003722.4	655	cGa/cAa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806234	1806234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	194	485	0	ENST00000260795.2:c.1253C>T	p.Pro418Leu	p.P418L	ENST00000260795		418	cCg/cTg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980458	1980458	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	256	610	0	ENST00000382891.5:c.3920A>G	p.His1307Arg	p.H1307R	ENST00000382891	NM_133335.3	1307	cAc/cGc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980581	1980581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	169	443	0	ENST00000382891.5:c.4043C>T	p.Pro1348Leu	p.P1348L	ENST00000382891	NM_133335.3	1348	cCg/cTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187538991	187538991	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	278	310	0	ENST00000441802.2:c.8749C>T	p.Arg2917Ter	p.R2917*	ENST00000441802	NM_005245.3	2917	Cga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187630099	187630099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61733573		P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	328	406	0	ENST00000441802.2:c.883G>A	p.Val295Met	p.V295M	ENST00000441802	NM_005245.3	295	Gtg/Atg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67592108	67592108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	105	240	0	ENST00000274335.5:c.1924C>T	p.Arg642Ter	p.R642*	ENST00000274335		642	Cga/Tga																																																																														
MSH3	0	MSKCC	GRCh37	5	79965934	79965934	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	107	383	0	ENST00000265081.6:c.598C>G	p.Leu200Val	p.L200V	ENST00000265081	NM_002439.4	200	Ctc/Gtc																																																																														
APC	0	MSKCC	GRCh37	5	112102931	112102932	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	131	308	0	ENST00000257430.4:c.271dup	p.Met91AsnfsTer48	p.M91Nfs*48	ENST00000257430	NM_000038.5	89	tca/tcAa																																																																														
APC	0	MSKCC	GRCh37	5	112162852	112162852	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	101	393	0	ENST00000257430.4:c.1456T>G	p.Tyr486Asp	p.Y486D	ENST00000257430	NM_000038.5	486	Tat/Gat																																																																														
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	122	274	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112179674	112179674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	97	296	0	ENST00000257430.4:c.8383G>A	p.Ala2795Thr	p.A2795T	ENST00000257430	NM_000038.5	2795	Gca/Aca																																																																														
NSD1	0	MSKCC	GRCh37	5	176665377	176665377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	90	264	1	ENST00000439151.2:c.4061G>A	p.Gly1354Asp	p.G1354D	ENST00000439151	NM_022455.4	1354	gGc/gAc																																																																														
NSD1	64324	MSKCC	GRCh37	5	176721713	176721713	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	120	362	2	ENST00000439151.2:c.7349del	p.Asn2450IlefsTer6	p.N2450Ifs*6	ENST00000439151	NM_022455.4	2448	tcA/tc																																																																														
FLT4	0	MSKCC	GRCh37	5	180057064	180057064	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	191	491	0	ENST00000261937.6:c.555G>A	p.Trp185Ter	p.W185*	ENST00000261937	NM_182925.4	185	tgG/tgA																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858551	27858551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	88	199	0	ENST00000359303.2:c.20C>T	p.Thr7Ile	p.T7I	ENST00000359303	NM_003535.2	7	aCa/aTa																																																																														
DAXX	0	MSKCC	GRCh37	6	33288857	33288857	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	88	245	0	ENST00000374542.5:c.695T>G	p.Leu232Arg	p.L232R	ENST00000374542	NM_001141970.1	232	cTg/cGg																																																																														
PNRC1	0	MSKCC	GRCh37	6	89790873	89790873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	136	463	0	ENST00000336032.3:c.260G>A	p.Gly87Glu	p.G87E	ENST00000336032	NM_006813.2	87	gGa/gAa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157511194	157511194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	130	436	2	ENST00000346085.5:c.3712G>A	p.Asp1238Asn	p.D1238N	ENST00000346085	NM_020732.3	1238	Gac/Aac																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522076	157522076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	107	355	0	ENST00000346085.5:c.4348G>A	p.Gly1450Ser	p.G1450S	ENST00000346085	NM_020732.3	1450	Ggc/Agc																																																																														
PARK2	0	MSKCC	GRCh37	6	162864448	162864448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	139	374	0	ENST00000366898.1:c.65G>T	p.Ser22Ile	p.S22I	ENST00000366898	NM_004562.2	22	aGc/aTc																																																																														
PMS2	0	MSKCC	GRCh37	7	6038813	6038813	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	206	512	0	ENST00000265849.7:c.631C>T	p.Arg211Ter	p.R211*	ENST00000265849	NM_000535.5	211	Cga/Tga																																																																														
BRAF	0	MSKCC	GRCh37	7	140534620	140534622	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	132	314	0	ENST00000288602.6:c.291_293del	p.Gln98del	p.Q98del	ENST00000288602	NM_004333.4	97	caACAg/cag																																																																														
EZH2	0	MSKCC	GRCh37	7	148523690	148523690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	98	213	0	ENST00000320356.2:c.763G>A	p.Ala255Thr	p.A255T	ENST00000320356	NM_004456.4	255	Gca/Aca																																																																														
SOX17	0	MSKCC	GRCh37	8	55371734	55371734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	176	371	0	ENST00000297316.4:c.424C>T	p.Arg142Cys	p.R142C	ENST00000297316	NM_022454.3	142	Cgc/Tgc																																																																														
PREX2	0	MSKCC	GRCh37	8	68942744	68942744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	122	312	1	ENST00000288368.4:c.556C>T	p.Arg186Trp	p.R186W	ENST00000288368	NM_024870.2	186	Cgg/Tgg																																																																														
PREX2	0	MSKCC	GRCh37	8	69129868	69129868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	85	222	0	ENST00000288368.4:c.4622C>T	p.Thr1541Met	p.T1541M	ENST00000288368	NM_024870.2	1541	aCg/aTg																																																																														
RAD21	0	MSKCC	GRCh37	8	117864938	117864938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	86	198	0	ENST00000297338.2:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000297338	NM_006265.2	391	Cgc/Tgc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737400	145737400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	184	479	1	ENST00000428558.2:c.3287G>A	p.Arg1096His	p.R1096H	ENST00000428558	NM_004260.3	1096	cGc/cAc																																																																														
JAK2	0	MSKCC	GRCh37	9	5050689	5050689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	95	277	0	ENST00000381652.3:c.472C>T	p.Arg158Trp	p.R158W	ENST00000381652	NM_004972.3	158	Cgg/Tgg																																																																														
JAK2	0	MSKCC	GRCh37	9	5090449	5090449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	70	206	0	ENST00000381652.3:c.2765G>A	p.Arg922Gln	p.R922Q	ENST00000381652	NM_004972.3	922	cGg/cAg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521420	8521421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	195	500	0	ENST00000356435.5:c.817dup	p.Ala273GlyfsTer7	p.A273Gfs*7	ENST00000356435		273	gca/gGca																																																																														
TEK	0	MSKCC	GRCh37	9	27212783	27212783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	201	527	2	ENST00000380036.4:c.2765C>T	p.Thr922Met	p.T922M	ENST00000380036	NM_000459.3	922	aCg/aTg																																																																														
RXRA	0	MSKCC	GRCh37	9	137326005	137326005	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11542209		P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	234	529	3	ENST00000481739.1:c.1193C>T	p.Ala398Val	p.A398V	ENST00000481739	NM_002957.4	398	gCg/gTg																																																																														
RBM10	0	MSKCC	GRCh37	X	47030463	47030463	+	intron_variant	Intron	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	221	535	1	ENST00000329236.7:c.201+1566C>T		p.*67*	ENST00000329236	NM_001204466.1	67																																																																															
KDM5C	0	MSKCC	GRCh37	X	53222454	53222454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	170	523	0	ENST00000375401.3:c.4378C>G	p.Arg1460Gly	p.R1460G	ENST00000375401	NM_004187.3	1460	Cgg/Ggg																																																																														
BTK	0	MSKCC	GRCh37	X	100611203	100611203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	132	444	1	ENST00000308731.7:c.1403G>A	p.Arg468His	p.R468H	ENST00000308731	NM_000061.2	468	cGc/cAc																																																																														
BTK	0	MSKCC	GRCh37	X	100630173	100630173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141488935		P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	153	403	0	ENST00000308731.7:c.100G>A	p.Val34Met	p.V34M	ENST00000308731	NM_000061.2	34	Gtg/Atg																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860097	152860097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201043377		P-0027740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	226	597	1	ENST00000406277.2:c.331C>T	p.Arg111Cys	p.R111C	ENST00000406277	NM_152274.4	111	Cgc/Tgc																																																																														
RASA1	0	MSKCC	GRCh37	5	86627234	86627238	+	frameshift_variant	Frame_Shift_Del	DEL	TTATC	TTATC	-			P-0027741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	116	272	0	ENST00000274376.6:c.613_617delCTTAT	p.Leu205LysfsTer4	p.L205Kfs*4	ENST00000274376	NM_002890.2	203	agTTATCtt/agtt																																																																														
TBX3	0	MSKCC	GRCh37	12	115109753	115109753	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	107	602	0	ENST00000257566.3:c.2125A>G	p.Lys709Glu	p.K709E	ENST00000257566	NM_016569.3	709	Aaa/Gaa																																																																														
MGA	0	MSKCC	GRCh37	15	42035307	42035307	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	128	393	0	ENST00000219905.7:c.5149C>G	p.Leu1717Val	p.L1717V	ENST00000219905	NM_001164273.1	1717	Ctg/Gtg																																																																														
TSC1	0	MSKCC	GRCh37	9	135777055	135777055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	97	432	1	ENST00000298552.3:c.2423C>T	p.Ala808Val	p.A808V	ENST00000298552	NM_001162426.1	808	gCg/gTg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38960078	38960090	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCCTAAAAGTAA	ATCCTAAAAGTAA	-			P-0027741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	19	197	0	ENST00000357387.3:c.1852-10_1854del		p.X618_splice	ENST00000357387	NM_152756.3	618																																																																															
FLT1	0	MSKCC	GRCh37	13	29012465	29012465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	66	324	0	ENST00000282397.4:c.406G>A	p.Val136Ile	p.V136I	ENST00000282397	NM_002019.4	136	Gta/Ata																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288843	15288843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	44	186	0	ENST00000263388.2:c.3896C>T	p.Pro1299Leu	p.P1299L	ENST00000263388	NM_000435.2	1299	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579315	7579315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	86	408	0	ENST00000269305.4:c.372C>A	p.Cys124Ter	p.C124*	ENST00000269305	NM_001126112.2	124	tgC/tgA																																																																														
MTOR	0	MSKCC	GRCh37	1	11300565	11300565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	125	576	0	ENST00000361445.4:c.1581G>T	p.Gln527His	p.Q527H	ENST00000361445	NM_004958.3	527	caG/caT																																																																														
DNMT1	0	MSKCC	GRCh37	19	10291193	10291193	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	104	473	0	ENST00000340748.4:c.278A>T	p.Glu93Val	p.E93V	ENST00000340748		93	gAg/gTg																																																																														
BARD1	0	MSKCC	GRCh37	2	215646191	215646191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	43	314	0	ENST00000260947.4:c.407C>T	p.Ala136Val	p.A136V	ENST00000260947	NM_000465.2	136	gCa/gTa																																																																														
MSH3	0	MSKCC	GRCh37	5	80064749	80064749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	64	478	1	ENST00000265081.6:c.2180G>T	p.Arg727Leu	p.R727L	ENST00000265081	NM_002439.4	727	cGa/cTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	18	435	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	58	540	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	34	537	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	103	284	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12043154	12043154	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0027748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	69	203	0	ENST00000353533.5:c.1041-2A>C		p.X347_splice	ENST00000353533	NM_003010.3	347																																																																															
RUNX1	0	MSKCC	GRCh37	21	36231849	36231850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	142	492	1	ENST00000300305.3:c.534dup	p.Val179CysfsTer34	p.V179Cfs*34	ENST00000300305		178	-/T																																																																														
MED12	0	MSKCC	GRCh37	X	70349243	70349243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	87	549	0	ENST00000374080.3:c.3655G>C	p.Ala1219Pro	p.A1219P	ENST00000374080		1219	Gcc/Ccc																																																																														
RB1	0	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	262	228	0	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	315	512	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
CDK12	0	MSKCC	GRCh37	17	37619238	37619238	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	147	395	0	ENST00000447079.4:c.914A>G	p.Tyr305Cys	p.Y305C	ENST00000447079	NM_015083.1	305	tAt/tGt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012929	176012929	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	143	431	0	ENST00000367669.3:c.1447A>T	p.Lys483Ter	p.K483*	ENST00000367669	NM_022457.5	483	Aag/Tag																																																																														
KDM5A	0	MSKCC	GRCh37	12	443499	443499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	168	424	0	ENST00000399788.2:c.1398G>T	p.Met466Ile	p.M466I	ENST00000399788	NM_001042603.1	466	atG/atT																																																																														
LATS2	0	MSKCC	GRCh37	13	21553911	21553911	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	425	441	0	ENST00000382592.4:c.2691G>C	p.Trp897Cys	p.W897C	ENST00000382592	NM_014572.2	897	tgG/tgC																																																																														
TRAF7	0	MSKCC	GRCh37	16	2223343	2223343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	304	562	0	ENST00000326181.6:c.955C>G	p.Leu319Val	p.L319V	ENST00000326181	NM_032271.2	319	Ctg/Gtg																																																																														
NUP93	0	MSKCC	GRCh37	16	56865840	56865840	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	110	365	0	ENST00000308159.5:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000308159	NM_014669.4	391	tAc/tGc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58677834	58677834	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	354	611	1	ENST00000305921.3:c.59A>T	p.Tyr20Phe	p.Y20F	ENST00000305921	NM_003620.3	20	tAc/tTc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	176	214	0	ENST00000397062.3:c.70T>G	p.Trp24Gly	p.W24G	ENST00000397062	NM_006164.4	24	Tgg/Ggg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42838075	42838075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	142	370	0	ENST00000398585.3:c.1584C>A	p.Asp528Glu	p.D528E	ENST00000398585	NM_001135099.1	528	gaC/gaA																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55131163	55131163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	351	578	0	ENST00000257290.5:c.706G>A	p.Ala236Thr	p.A236T	ENST00000257290	NM_006206.4	236	Gct/Act																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950528	38950528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	139	367	0	ENST00000357387.3:c.3422T>G	p.Phe1141Cys	p.F1141C	ENST00000357387	NM_152756.3	1141	tTt/tGt																																																																														
SMO	0	MSKCC	GRCh37	7	128829009	128829009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	43	66	0	ENST00000249373.3:c.17C>T	p.Pro6Leu	p.P6L	ENST00000249373	NM_005631.4	6	cCa/cTa																																																																														
RAD21	0	MSKCC	GRCh37	8	117878898	117878898	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	139	424	0	ENST00000297338.2:c.71A>T	p.Asp24Val	p.D24V	ENST00000297338	NM_006265.2	24	gAt/gTt																																																																														
ATRX	0	MSKCC	GRCh37	X	76949319	76949319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	158	432	0	ENST00000373344.5:c.478C>T	p.Arg160Cys	p.R160C	ENST00000373344	NM_000489.3	160	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	541	642	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49447343	49447343	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	543	646	1	ENST00000301067.7:c.755A>C	p.His252Pro	p.H252P	ENST00000301067	NM_003482.3	252	cAc/cCc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121416836	121416836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	69	772	0	ENST00000257555.6:c.265C>A	p.Leu89Met	p.L89M	ENST00000257555		89	Ctg/Atg																																																																														
POLE	0	MSKCC	GRCh37	12	133220014	133220014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	366	537	1	ENST00000320574.5:c.4423C>A	p.Gln1475Lys	p.Q1475K	ENST00000320574	NM_006231.2	1475	Cag/Aag																																																																														
RB1	0	MSKCC	GRCh37	13	48936943	48936959	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTACAGAAACAGCTG	TTTTACAGAAACAGCTG	-			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	172	349	0	ENST00000267163.4:c.719-6_729del		p.X240_splice	ENST00000267163	NM_000321.2	240																																																																															
TSC2	0	MSKCC	GRCh37	16	2126115	2126115	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	812	769	0	ENST00000219476.3:c.2686T>A	p.Trp896Arg	p.W896R	ENST00000219476	NM_000548.3	896	Tgg/Agg																																																																														
CDK12	0	MSKCC	GRCh37	17	37682135	37682135	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	292	462	0	ENST00000447079.4:c.3326A>C	p.Gln1109Pro	p.Q1109P	ENST00000447079	NM_015083.1	1109	cAa/cCa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281232	15281232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	588	716	0	ENST00000263388.2:c.5024G>T	p.Trp1675Leu	p.W1675L	ENST00000263388	NM_000435.2	1675	tGg/tTg																																																																														
CIC	0	MSKCC	GRCh37	19	42799267	42799267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	366	499	2	ENST00000575354.2:c.4751G>T	p.Gly1584Val	p.G1584V	ENST00000575354	NM_015125.3	1584	gGa/gTa																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111881389	111881389	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	293	469	2	ENST00000393256.3:c.67G>T	p.Glu23Ter	p.E23*	ENST00000393256	NM_006538.4	23	Gag/Tag																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670622	134670622	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	361	718	0	ENST00000398015.3:c.533A>T	p.Gln178Leu	p.Q178L	ENST00000398015	NM_004441.4	178	cAg/cTg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1978322	1978322	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	590	668	0	ENST00000382891.5:c.3742G>C	p.Gly1248Arg	p.G1248R	ENST00000382891	NM_133335.3	1248	Ggc/Cgc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356320	66356320	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	426	441	0	ENST00000273854.3:c.1177A>G	p.Ile393Val	p.I393V	ENST00000273854	NM_004439.5	393	Att/Gtt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467833	66467833	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	170	296	0	ENST00000273854.3:c.436A>T	p.Thr146Ser	p.T146S	ENST00000273854	NM_004439.5	146	Acc/Tcc																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032202	26032202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	171	243	0	ENST00000244661.2:c.87C>A	p.Ser29Arg	p.S29R	ENST00000244661	NM_003537.3	29	agC/agA																																																																														
LYN	0	MSKCC	GRCh37	8	56860224	56860224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	36	519	0	ENST00000519728.1:c.226G>A	p.Gly76Ser	p.G76S	ENST00000519728	NM_002350.3	76	Ggc/Agc																																																																														
MYC	0	MSKCC	GRCh37	8	128751238	128751238	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	286	366	0	ENST00000377970.2:c.775A>T	p.Thr259Ser	p.T259S	ENST00000377970	NM_002467.4	259	Aca/Tca																																																																														
KDM5C	0	MSKCC	GRCh37	X	53224517	53224518	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AG			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	878	707	1	ENST00000375401.3:c.3195_3196delinsCT	p.Glu1066Ter	p.E1066*	ENST00000375401	NM_004187.3	1065	ctGGag/ctCTag																																																																														
XIAP	0	MSKCC	GRCh37	X	123034437	123034437	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	157	583	0	ENST00000355640.3:c.1194G>C	p.Gln398His	p.Q398H	ENST00000355640		398	caG/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	18	532	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591115	67591123	+	inframe_deletion	In_Frame_Del	DEL	CTTATCCAG	CTTATCCAG	-			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	59	332	0	ENST00000274335.5:c.1710_1718del	p.Ile571_Leu573del	p.I571_L573del	ENST00000274335		570	CTTATCCAG/-																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138473	11138473	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	180	461	2	ENST00000344626.4:c.3229C>T	p.Arg1077Ter	p.R1077*	ENST00000344626	NM_003072.3	1077	Cga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431184	49431184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	122	619	0	ENST00000301067.7:c.9955G>C	p.Gly3319Arg	p.G3319R	ENST00000301067	NM_003482.3	3319	Ggt/Cgt																																																																														
FLT1	0	MSKCC	GRCh37	13	29041727	29041727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	28	372	0	ENST00000282397.4:c.92A>G	p.Asp31Gly	p.D31G	ENST00000282397	NM_002019.4	31	gAt/gGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578503	7578504	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGGCAGG			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	292	887	0	ENST00000269305.4:c.419_426dup	p.Val143ProfsTer30	p.V143Pfs*30	ENST00000269305	NM_001126112.2	142	-/CCTGCCCT																																																																														
BRCA1	0	MSKCC	GRCh37	17	41228518	41228518	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	420	604	0	ENST00000357654.3:c.4471C>G	p.Pro1491Ala	p.P1491A	ENST00000357654	NM_007294.3	1491	Cca/Gca																																																																														
CCNE1	0	MSKCC	GRCh37	19	30314635	30314635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	128	531	0	ENST00000262643.3:c.1184C>A	p.Thr395Asn	p.T395N	ENST00000262643	NM_001238.2	395	aCc/aAc																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24129358	24129358	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	107	404	0	ENST00000263121.7:c.2T>G	p.Met1?	p.M1?	ENST00000263121	NM_003073.3	1	aTg/aGg																																																																														
APC	0	MSKCC	GRCh37	5	112174868	112174898	+	protein_altering_variant	In_Frame_Del	DEL	CAGTCATTTTCATTCTCAAAGAGTTCATCTG	CAGTCATTTTCATTCTCAAAGAGTTCATCTG	ACTC			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	55	264	1	ENST00000257430.4:c.3577_3607delinsACTC	p.Gln1193_Gly1203delinsThrArg	p.Q1193_G1203delinsTR	ENST00000257430	NM_000038.5	1193	CAGTCATTTTCATTCTCAAAGAGTTCATCTGga/ACTCga																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120594	94120594	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	57	380	0	ENST00000369303.4:c.457G>T	p.Glu153Ter	p.E153*	ENST00000369303	NM_004440.3	153	Gaa/Taa																																																																														
RBM10	0	MSKCC	GRCh37	X	47034460	47034460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	80	712	0	ENST00000329236.7:c.314A>C	p.Gln105Pro	p.Q105P	ENST00000329236	NM_001204466.1	105	cAg/cCg																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0027680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	68	261	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	80	429	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	226	489	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0027680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	165	351	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575090	48575090	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	95	393	0	ENST00000342988.3:c.284A>G	p.Tyr95Cys	p.Y95C	ENST00000342988	NM_005359.5	95	tAt/tGt																																																																														
SMO	0	MSKCC	GRCh37	7	128829128	128829128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	62	64	0	ENST00000249373.3:c.136G>A	p.Gly46Arg	p.G46R	ENST00000249373	NM_005631.4	46	Ggg/Agg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	139	742	0	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47165024	47165024	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	51	380	1	ENST00000409792.3:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000409792	NM_014159.6	368	Cga/Tga																																																																														
SOX2	0	MSKCC	GRCh37	3	181430390	181430390	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	148	784	0	ENST00000325404.1:c.245del	p.Leu82CysfsTer21	p.L82Cfs*21	ENST00000325404	NM_003106.3	81	cTt/ct																																																																														
KDR	0	MSKCC	GRCh37	4	55953861	55953861	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	98	533	0	ENST00000263923.4:c.3575T>G	p.Leu1192Arg	p.L1192R	ENST00000263923	NM_002253.2	1192	cTc/cGc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	37	246	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205323	38205323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	107	786	0	ENST00000317025.8:c.367G>A	p.Glu123Lys	p.E123K	ENST00000317025	NM_023034.1	123	Gaa/Aaa																																																																														
PTPN11	0	MSKCC	GRCh37	12	112910749	112910750	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0027686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	80	441	0	ENST00000351677.2:c.759dup	p.Leu254ThrfsTer25	p.L254Tfs*25	ENST00000351677	NM_002834.3	253	aca/acAa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457251	67457251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	44	543	0	ENST00000327367.4:c.225G>T	p.Leu75Phe	p.L75F	ENST00000327367	NM_005902.3	75	ttG/ttT																																																																														
SLX4	0	MSKCC	GRCh37	16	3647391	3647391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	38	553	0	ENST00000294008.3:c.1672C>T	p.Arg558Trp	p.R558W	ENST00000294008	NM_032444.2	558	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0027189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	15	490	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	32	766	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965936	25965936	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	85	549	0	ENST00000435504.4:c.3270del	p.Phe1090LeufsTer37	p.F1090Lfs*37	ENST00000435504		1090	ttC/tt																																																																														
JUN	0	MSKCC	GRCh37	1	59247911	59247912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	152	695	0	ENST00000371222.2:c.831dup	p.Ala278ArgfsTer32	p.A278Rfs*32	ENST00000371222	NM_002228.3	277	-/C																																																																														
ELF3	0	MSKCC	GRCh37	1	201980337	201980338	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	137	741	0	ENST00000359651.3:c.76dup	p.Leu26ProfsTer14	p.L26Pfs*14	ENST00000359651		25	acc/aCcc																																																																														
ELF3	0	MSKCC	GRCh37	1	201984364	201984365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	344	606	0	ENST00000359651.3:c.1030dup	p.Arg344ProfsTer127	p.R344Pfs*127	ENST00000359651		343	-/C																																																																														
TP53	0	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	368	576	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29657313	29657313	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	246	456	1	ENST00000358273.4:c.5610-1G>T		p.X1870_splice	ENST00000358273	NM_001042492.2	1870																																																																															
NF1	0	MSKCC	GRCh37	17	29483000	29483000	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	229	308	2	ENST00000358273.4:c.61-1G>T		p.X21_splice	ENST00000358273	NM_001042492.2	21																																																																															
NTRK1	0	MSKCC	GRCh37	1	156846343	156846343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	299	575	0	ENST00000524377.1:c.1784G>A	p.Gly595Glu	p.G595E	ENST00000524377	NM_002529.3	595	gGg/gAg																																																																														
DDR2	0	MSKCC	GRCh37	1	162722964	162722964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	271	502	0	ENST00000367921.3:c.162G>T	p.Glu54Asp	p.E54D	ENST00000367921	NM_006182.2	54	gaG/gaT																																																																														
AKT3	0	MSKCC	GRCh37	1	243809322	243809322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	215	343	0	ENST00000263826.5:c.302C>A	p.Ala101Asp	p.A101D	ENST00000263826	NM_005465.4	101	gCt/gAt																																																																														
PGR	0	MSKCC	GRCh37	11	100996861	100996861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	336	527	0	ENST00000325455.5:c.1666C>G	p.Gln556Glu	p.Q556E	ENST00000325455	NM_001202474.3	556	Caa/Gaa																																																																														
KDM5A	0	MSKCC	GRCh37	12	443491	443491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	127	446	0	ENST00000399788.2:c.1406C>A	p.Pro469Gln	p.P469Q	ENST00000399788	NM_001042603.1	469	cCg/cAg																																																																														
KDM5A	0	MSKCC	GRCh37	12	461394	461394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	116	377	0	ENST00000399788.2:c.1126G>T	p.Asp376Tyr	p.D376Y	ENST00000399788	NM_001042603.1	376	Gat/Tat																																																																														
SH2B3	0	MSKCC	GRCh37	12	111886054	111886054	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	253	456	0	ENST00000341259.2:c.1676C>A	p.Ser559Ter	p.S559*	ENST00000341259	NM_005475.2	559	tCa/tAa																																																																														
HNF1A	0	MSKCC	GRCh37	12	121432040	121432040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	181	602	0	ENST00000257555.6:c.787C>A	p.Arg263Ser	p.R263S	ENST00000257555		263	Cgt/Agt																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134297	41134297	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	197	384	1	ENST00000379561.5:c.1331A>T	p.Asp444Val	p.D444V	ENST00000379561	NM_002015.3	444	gAc/gTc																																																																														
DICER1	0	MSKCC	GRCh37	14	95566164	95566164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	232	460	0	ENST00000343455.3:c.4159G>T	p.Val1387Leu	p.V1387L	ENST00000343455	NM_177438.2	1387	Gta/Tta																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680725	88680725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	282	566	0	ENST00000360948.2:c.532G>T	p.Gly178Trp	p.G178W	ENST00000360948	NM_001012338.2	178	Ggg/Tgg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031880	10031880	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	222	499	1	ENST00000330684.3:c.943G>T	p.Glu315Ter	p.E315*	ENST00000330684	NM_001134407.1	315	Gag/Tag																																																																														
DNMT1	0	MSKCC	GRCh37	19	10259662	10259662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	203	393	0	ENST00000340748.4:c.2570G>T	p.Gly857Val	p.G857V	ENST00000340748		857	gGg/gTg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45872238	45872238	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	171	537	2	ENST00000391945.4:c.196G>T	p.Glu66Ter	p.E66*	ENST00000391945	NM_000400.3	66	Gag/Tag																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965665	25965665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	165	470	0	ENST00000435504.4:c.3541A>G	p.Thr1181Ala	p.T1181A	ENST00000435504		1181	Act/Gct																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966954	25966954	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	516	499	0	ENST00000435504.4:c.2252A>T	p.Gln751Leu	p.Q751L	ENST00000435504		751	cAg/cTg																																																																														
PMS1	0	MSKCC	GRCh37	2	190742002	190742002	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	233	403	0	ENST00000441310.2:c.2639A>T	p.Glu880Val	p.E880V	ENST00000441310	NM_000534.4	880	gAa/gTa																																																																														
BAP1	0	MSKCC	GRCh37	3	52439155	52439155	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	282	572	1	ENST00000460680.1:c.1087A>T	p.Asn363Tyr	p.N363Y	ENST00000460680	NM_004656.3	363	Aat/Tat																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468442	89468443	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	145	347	0	ENST00000336596.2:c.1979_1980del	p.Thr660ArgfsTer18	p.T660Rfs*18	ENST00000336596	NM_005233.5	659	tAC/t																																																																														
EPHB1	0	MSKCC	GRCh37	3	134644656	134644656	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	189	393	0	ENST00000398015.3:c.59-2A>G		p.X20_splice	ENST00000398015	NM_004441.4	20																																																																															
PRKCI	0	MSKCC	GRCh37	3	169940465	169940465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	220	354	0	ENST00000295797.4:c.8C>A	p.Thr3Asn	p.T3N	ENST00000295797	NM_002740.5	3	aCc/aAc																																																																														
TP63	0	MSKCC	GRCh37	3	189607266	189607266	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	275	569	0	ENST00000264731.3:c.1645A>T	p.Ile549Phe	p.I549F	ENST00000264731	NM_003722.4	549	Att/Ttt																																																																														
KDR	0	MSKCC	GRCh37	4	55981537	55981537	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	115	383	0	ENST00000263923.4:c.400G>T	p.Gly134Ter	p.G134*	ENST00000263923	NM_002253.2	134	Gga/Tga																																																																														
RASA1	0	MSKCC	GRCh37	5	86629155	86629155	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	183	380	0	ENST00000274376.6:c.899+1G>T		p.X300_splice	ENST00000274376	NM_002890.2	300																																																																															
PDGFRB	0	MSKCC	GRCh37	5	149501445	149501445	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	314	482	0	ENST00000261799.4:c.2342C>A	p.Ser781Tyr	p.S781Y	ENST00000261799	NM_002609.3	781	tCt/tAt																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158689	26158689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	10	92	0	ENST00000289316.2:c.292G>T	p.Ala98Ser	p.A98S	ENST00000289316	NM_138720.2	98	Gcc/Tcc																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197348	26197348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	162	331	0	ENST00000356476.2:c.131C>A	p.Pro44His	p.P44H	ENST00000356476		44	cCc/cAc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32181885	32181885	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	216	511	0	ENST00000375023.3:c.2167+2T>A		p.X723_splice	ENST00000375023	NM_004557.3	723																																																																															
PMS2	0	MSKCC	GRCh37	7	6027077	6027077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	239	232	0	ENST00000265849.7:c.1319del	p.Pro440GlnfsTer8	p.P440Qfs*8	ENST00000265849	NM_000535.5	440	cCa/ca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845982	151845982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	74	441	0	ENST00000262189.6:c.13030G>C	p.Asp4344His	p.D4344H	ENST00000262189	NM_170606.2	4344	Gat/Cat																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538747	23538747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	171	283	0	ENST00000380871.4:c.692C>T	p.Pro231Leu	p.P231L	ENST00000380871	NM_006167.3	231	cCa/cTa																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5557738	5557738	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	175	350	0	ENST00000397747.3:c.752T>G	p.Leu251Arg	p.L251R	ENST00000397747	NM_025239.3	251	cTg/cGg																																																																														
CRLF2	0	MSKCC	GRCh37	X	1314940	1314940	+	downstream_gene_variant	3'Flank	SNP	G	G	T			P-0027654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	129	515	0				ENST00000381566																																																																																	
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0027656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	346	557	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912092	114912101	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGGCATGCAC	TGGCATGCAC	-			P-0027656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	104	338	0	ENST00000543371.1:c.1164_1173del	p.Trp388CysfsTer100	p.W388Cfs*100	ENST00000543371	NM_001198531.1	388	TGGCATGCACtg/tg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584731	48584732	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	113	351	0	ENST00000342988.3:c.811dup	p.Ser271LysfsTer2	p.S271Kfs*2	ENST00000342988	NM_005359.5	270	gga/ggAa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249469	153249469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	560	485	0	ENST00000281708.4:c.1309G>A	p.Gly437Arg	p.G437R	ENST00000281708	NM_033632.3	437	Gga/Aga																																																																														
APC	0	MSKCC	GRCh37	5	112111390	112111390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	88	311	0	ENST00000257430.4:c.487C>T	p.Gln163Ter	p.Q163*	ENST00000257430	NM_000038.5	163	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112175467	112175471	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTG	ACTTG	-			P-0027656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	84	242	0	ENST00000257430.4:c.4177_4181del	p.Leu1393Ter	p.L1393*	ENST00000257430	NM_000038.5	1392	tcACTTGat/tcat																																																																														
RRAS2	0	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	90	509	0	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	273	781	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
RB1	0	MSKCC	GRCh37	13	48878061	48878062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	149	293	0	ENST00000267163.4:c.19dup	p.Arg7ProfsTer24	p.R7Pfs*24	ENST00000267163	NM_000321.2	5	acc/aCcc																																																																														
PARK2	0	MSKCC	GRCh37	6	161771155	161771155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	91	563	0	ENST00000366898.1:c.1374G>T	p.Met458Ile	p.M458I	ENST00000366898	NM_004562.2	458	atG/atT																																																																														
MCL1	0	MSKCC	GRCh37	1	150551886	150551886	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	94	362	2	ENST00000369026.2:c.121G>C	p.Glu41Gln	p.E41Q	ENST00000369026	NM_021960.4	41	Gag/Cag																																																																														
TET1	0	MSKCC	GRCh37	10	70432741	70432741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	124	576	0	ENST00000373644.4:c.4763G>A	p.Cys1588Tyr	p.C1588Y	ENST00000373644	NM_030625.2	1588	tGt/tAt																																																																														
GLI1	0	MSKCC	GRCh37	12	57864234	57864234	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	125	492	0	ENST00000228682.2:c.1711C>G	p.Pro571Ala	p.P571A	ENST00000228682	NM_005269.2	571	Cca/Gca																																																																														
PTPN11	0	MSKCC	GRCh37	12	112888210	112888210	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	65	539	0	ENST00000351677.2:c.226G>T	p.Glu76Ter	p.E76*	ENST00000351677	NM_002834.3	76	Gag/Tag																																																																														
IGF1R	0	MSKCC	GRCh37	15	99467760	99467760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs150221450		P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	81	308	2	ENST00000268035.6:c.2629C>T	p.Arg877Ter	p.R877*	ENST00000268035	NM_000875.3	877	Cga/Tga																																																																														
CYLD	0	MSKCC	GRCh37	16	50825537	50825537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	85	450	0	ENST00000398568.2:c.2168G>T	p.Gly723Val	p.G723V	ENST00000398568	NM_001042412.1	723	gGc/gTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228154	36228154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	92	626	0	ENST00000222270.7:c.7540G>C	p.Val2514Leu	p.V2514L	ENST00000222270	NM_014727.1	2514	Gtc/Ctc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1959722	1959722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	84	333	0	ENST00000382891.5:c.2944C>A	p.Gln982Lys	p.Q982K	ENST00000382891	NM_133335.3	982	Cag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187628326	187628326	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	128	516	0	ENST00000441802.2:c.2656G>T	p.Glu886Ter	p.E886*	ENST00000441802	NM_005245.3	886	Gag/Tag																																																																														
ESR1	0	MSKCC	GRCh37	6	152332865	152332865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	39	410	0	ENST00000206249.3:c.1171C>A	p.Leu391Ile	p.L391I	ENST00000206249	NM_000125.3	391	Ctc/Atc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877975	151877975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	93	324	0	ENST00000262189.6:c.6970G>T	p.Asp2324Tyr	p.D2324Y	ENST00000262189	NM_170606.2	2324	Gat/Tat																																																																														
PREX2	0	MSKCC	GRCh37	8	68981355	68981355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	67	382	0	ENST00000288368.4:c.1427A>T	p.Gln476Leu	p.Q476L	ENST00000288368	NM_024870.2	476	cAg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	300	604	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	300	580	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
FGF4	0	MSKCC	GRCh37	11	69589755	69589755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	24	177	0	ENST00000168712.1:c.98C>A	p.Thr33Asn	p.T33N	ENST00000168712	NM_002007.2	33	aCt/aAt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66468001	66468001	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	37	241	0	ENST00000273854.3:c.268G>C	p.Asp90His	p.D90H	ENST00000273854	NM_004439.5	90	Gat/Cat																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099569	157099569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	52	179	0	ENST00000346085.5:c.506G>T	p.Gly169Val	p.G169V	ENST00000346085	NM_020732.3	169	gGc/gTc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372553	55372553	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0027664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	95	550	1	ENST00000297316.4:c.1243T>A	p.Ter415ArgextTer48	p.*415Rext*48	ENST00000297316	NM_022454.3	415	Tga/Aga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	341	585	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	129	587	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974697	21974699	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0027411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	84	449	0	ENST00000304494.5:c.128_130del	p.Ser43_Tyr44delinsAsn	p.S43_Y44delinsN	ENST00000304494	NM_000077.4	43	aGTTac/aac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974697	21974699	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0027411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	84	449	0	ENST00000304494.5:c.128_130del	p.Ser43_Tyr44delinsAsn	p.S43_Y44delinsN	ENST00000304494	NM_000077.4	43	aGTTac/aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	127	567	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	135	691	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
PBRM1	0	MSKCC	GRCh37	3	52610608	52610608	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	150	618	0	ENST00000394830.3:c.3565G>T	p.Glu1189Ter	p.E1189*	ENST00000394830	NM_018313.4	1189	Gaa/Taa																																																																														
BLM	0	MSKCC	GRCh37	15	91328208	91328208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	112	546	0	ENST00000355112.3:c.2720C>T	p.Thr907Met	p.T907M	ENST00000355112	NM_000057.2	907	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	243	760	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80430633	80430633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	153	305	0	ENST00000286548.4:c.375G>T	p.Glu125Asp	p.E125D	ENST00000286548	NM_002072.3	125	gaG/gaT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106321	27106322	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	111	565	2	ENST00000324856.7:c.5932_5933delinsAT	p.Ala1978Ile	p.A1978I	ENST00000324856	NM_006015.4	1978	GCc/ATc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012898	176012898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	205	644	1	ENST00000367669.3:c.1478G>A	p.Gly493Asp	p.G493D	ENST00000367669	NM_022457.5	493	gGc/gAc																																																																														
AKT3	0	MSKCC	GRCh37	1	243828096	243828096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	198	548	0	ENST00000263826.5:c.262C>A	p.His88Asn	p.H88N	ENST00000263826	NM_005465.4	88	Cat/Aat																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43712793	43712793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	238	761	0	ENST00000382044.4:c.4391G>T	p.Arg1464Leu	p.R1464L	ENST00000382044	NM_001141980.1	1464	cGt/cTt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52719125	52719125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	199	669	0	ENST00000322088.6:c.901G>T	p.Ala301Ser	p.A301S	ENST00000322088	NM_014225.5	301	Gca/Tca																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967293	134967293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	236	655	0	ENST00000398015.3:c.2632C>A	p.Leu878Ile	p.L878I	ENST00000398015	NM_004441.4	878	Cta/Ata																																																																														
ATR	0	MSKCC	GRCh37	3	142177868	142177868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	406	549	0	ENST00000350721.4:c.7435G>A	p.Glu2479Lys	p.E2479K	ENST00000350721	NM_001184.3	2479	Gaa/Aaa																																																																														
TERT	0	MSKCC	GRCh37	5	1295276	1295276	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0027414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	127	446	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0027420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	53	494	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	78	673	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603038	48603039	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCAGCAGCAGGCGGCTACTGCACAAGC			P-0027420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	17	379	1	ENST00000342988.3:c.1349_1376dup	p.Ala460GlyfsTer43	p.A460Gfs*43	ENST00000342988	NM_005359.5	447	atg/aTGCAGCAGCAGGCGGCTACTGCACAAGCtg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214395	5214395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	41	502	0	ENST00000357368.4:c.4591G>A	p.Val1531Ile	p.V1531I	ENST00000357368	NM_002850.3	1531	Gtc/Atc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31016166	31016166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	49	576	0	ENST00000375687.4:c.412A>G	p.Thr138Ala	p.T138A	ENST00000375687	NM_015338.5	138	Aca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	56	549	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0027424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	37	500	2	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	32	588	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	242	636	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	141	636	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214594	5214594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	280	773	0	ENST00000357368.4:c.4472C>T	p.Thr1491Met	p.T1491M	ENST00000357368	NM_002850.3	1491	aCg/aTg																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	326	302	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	360	694	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094327	27094327	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	333	615	1	ENST00000324856.7:c.3035del	p.Tyr1012LeufsTer27	p.Y1012Lfs*27	ENST00000324856	NM_006015.4	1012	tAt/tt																																																																														
SOX9	0	MSKCC	GRCh37	17	70119877	70119878	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	66	671	0	ENST00000245479.2:c.882dup	p.Asp295Ter	p.D295*	ENST00000245479	NM_000346.3	293	-/T																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247253	153247253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	357	578	0	ENST00000281708.4:c.1549G>A	p.Gly517Arg	p.G517R	ENST00000281708	NM_033632.3	517	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	295	598	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0027430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	377	439	5	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247294	153247294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	580	468	0	ENST00000281708.4:c.1508C>T	p.Ala503Val	p.A503V	ENST00000281708	NM_033632.3	503	gCa/gTa																																																																														
JAK3	0	MSKCC	GRCh37	19	17942515	17942515	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149452625		P-0027430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	383	638	0	ENST00000458235.1:c.2773C>T	p.Arg925Cys	p.R925C	ENST00000458235	NM_000215.3	925	Cgc/Tgc																																																																														
PALB2	0	MSKCC	GRCh37	16	23647026	23647026	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	164	682	0	ENST00000261584.4:c.841A>T	p.Ile281Phe	p.I281F	ENST00000261584	NM_024675.3	281	Att/Ttt																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26046009	26046009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	111	348	0	ENST00000540144.1:c.371A>G	p.Asp124Gly	p.D124G	ENST00000540144	NM_003531.2	124	gAt/gGt																																																																														
MTOR	0	MSKCC	GRCh37	1	11217299	11217299	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	195	678	1	ENST00000361445.4:c.4379T>C	p.Leu1460Pro	p.L1460P	ENST00000361445	NM_004958.3	1460	cTt/cCt																																																																														
VHL	0	MSKCC	GRCh37	3	10183799	10183799	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	163	531	0	ENST00000256474.2:c.269del	p.Asn90ThrfsTer69	p.N90Tfs*69	ENST00000256474	NM_000551.3	90	Aac/ac																																																																														
SETD2	0	MSKCC	GRCh37	3	47147486	47147486	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0027585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	110	472	0	ENST00000409792.3:c.4839+1G>C		p.X1613_splice	ENST00000409792	NM_014159.6	1613																																																																															
KMT2C	0	MSKCC	GRCh37	7	151879125	151879125	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	45	526	0	ENST00000262189.6:c.5820G>C	p.Glu1940Asp	p.E1940D	ENST00000262189	NM_170606.2	1940	gaG/gaC																																																																														
IL10	0	MSKCC	GRCh37	1	206944256	206944256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	253	286	1	ENST00000423557.1:c.374G>A	p.Arg125His	p.R125H	ENST00000423557	NM_000572.2	125	cGc/cAc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	334	560	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	783	505	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	262	281	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55																																																																															
TBX3	0	MSKCC	GRCh37	12	115112553	115112555	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	AT			P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	539	603	2	ENST00000257566.3:c.1185_1187delinsAT	p.Thr397ProfsTer235	p.T397Pfs*235	ENST00000257566	NM_016569.3	395	atCTCc/atATc																																																																														
CDH1	0	MSKCC	GRCh37	16	68842438	68842439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	723	582	0	ENST00000261769.5:c.504dupA	p.Gly169ArgfsTer5	p.G169Rfs*5	ENST00000261769	NM_004360.3	167	gaa/gAaa																																																																														
RBM10	0	MSKCC	GRCh37	X	47045934	47045934	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	536	525	1	ENST00000329236.7:c.2495C>A	p.Ser832Ter	p.S832*	ENST00000329236	NM_001204466.1	832	tCa/tAa																																																																														
AR	0	MSKCC	GRCh37	X	66937326	66937326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	23	288	0	ENST00000374690.3:c.2180G>T	p.Arg727Leu	p.R727L	ENST00000374690	NM_000044.3	727	cGc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	244	678	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	1084	528	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158626	26158626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	23	239	1	ENST00000289316.2:c.229G>A	p.Glu77Lys	p.E77K	ENST00000289316	NM_138720.2	77	Gag/Aag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201686	66201686	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	116	509	0	ENST00000273854.3:c.2816C>G	p.Pro939Arg	p.P939R	ENST00000273854	NM_004439.5	939	cCa/cGa																																																																														
CIC	0	MSKCC	GRCh37	19	42796616	42796616	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	91	568	0	ENST00000575354.2:c.3173C>G	p.Ser1058Ter	p.S1058*	ENST00000575354	NM_015125.3	1058	tCa/tGa																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031939	26031939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	48	366	1	ENST00000244661.2:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000244661	NM_003537.3	117	cGa/cAa																																																																														
PRDM1	0	MSKCC	GRCh37	6	106543594	106543594	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	486	359	0	ENST00000369096.4:c.396G>C	p.Arg132Ser	p.R132S	ENST00000369096	NM_001198.3	132	agG/agC																																																																														
KMT2A	0	MSKCC	GRCh37	11	118390751	118390751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	46	517	0	ENST00000534358.1:c.11401G>A	p.Glu3801Lys	p.E3801K	ENST00000534358	NM_005933.3	3801	Gag/Aag																																																																														
MTOR	0	MSKCC	GRCh37	1	11174908	11174908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	73	603	0	ENST00000361445.4:c.7126C>G	p.Pro2376Ala	p.P2376A	ENST00000361445	NM_004958.3	2376	Cca/Gca																																																																														
RRAGC	0	MSKCC	GRCh37	1	39322653	39322653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	212	621	0	ENST00000373001.3:c.339G>C	p.Gln113His	p.Q113H	ENST00000373001	NM_022157.3	113	caG/caC																																																																														
CSDE1	0	MSKCC	GRCh37	1	115273231	115273231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	79	636	0	ENST00000438362.2:c.1227C>G	p.Ile409Met	p.I409M	ENST00000438362	NM_001242891.1	409	atC/atG																																																																														
ARID5B	0	MSKCC	GRCh37	10	63699984	63699984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	54	330	0	ENST00000279873.7:c.319G>A	p.Glu107Lys	p.E107K	ENST00000279873	NM_032199.2	107	Gaa/Aaa																																																																														
ARID5B	0	MSKCC	GRCh37	10	63845593	63845593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	46	387	0	ENST00000279873.7:c.1332C>G	p.Ile444Met	p.I444M	ENST00000279873	NM_032199.2	444	atC/atG																																																																														
RRAS2	0	MSKCC	GRCh37	11	14317377	14317377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	64	457	0	ENST00000256196.4:c.133C>T	p.Pro45Ser	p.P45S	ENST00000256196		45	Cca/Tca																																																																														
SESN3	0	MSKCC	GRCh37	11	94924635	94924635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	122	708	1	ENST00000536441.1:c.275G>A	p.Ser92Asn	p.S92N	ENST00000536441	NM_144665.3	92	aGc/aAc																																																																														
BIRC3	0	MSKCC	GRCh37	11	102207738	102207738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	47	500	0	ENST00000263464.3:c.1720C>A	p.His574Asn	p.H574N	ENST00000263464	NM_001165.4	574	Cat/Aat																																																																														
BRCA2	0	MSKCC	GRCh37	13	32929380	32929380	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	71	576	0	ENST00000380152.3:c.7390C>G	p.Gln2464Glu	p.Q2464E	ENST00000380152		2464	Caa/Gaa																																																																														
IRS2	0	MSKCC	GRCh37	13	110435769	110435769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	33	314	0	ENST00000375856.3:c.2632G>A	p.Glu878Lys	p.E878K	ENST00000375856	NM_003749.2	878	Gag/Aag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748128	43748128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	76	579	0	ENST00000382044.4:c.2678C>G	p.Ser893Cys	p.S893C	ENST00000382044	NM_001141980.1	893	tCt/tGt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81960704	81960704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	92	617	0	ENST00000359376.3:c.2435G>A	p.Gly812Glu	p.G812E	ENST00000359376	NM_002661.3	812	gGa/gAa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11998902	11998902	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	34	298	0	ENST00000353533.5:c.404C>G	p.Ser135Ter	p.S135*	ENST00000353533	NM_003010.3	135	tCa/tGa																																																																														
NF1	0	MSKCC	GRCh37	17	29490279	29490279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	102	485	0	ENST00000358273.4:c.364C>A	p.His122Asn	p.H122N	ENST00000358273	NM_001042492.2	122	Cac/Aac																																																																														
CDK12	0	MSKCC	GRCh37	17	37680979	37680979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	55	583	1	ENST00000447079.4:c.3148C>T	p.Gln1050Ter	p.Q1050*	ENST00000447079	NM_015083.1	1050	Cag/Tag																																																																														
BRIP1	0	MSKCC	GRCh37	17	59760893	59760893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1419	76	630	0	ENST00000259008.2:c.3514G>A	p.Glu1172Lys	p.E1172K	ENST00000259008	NM_032043.2	1172	Gaa/Aaa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222034	2222034	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	88	789	0	ENST00000398665.3:c.2866C>G	p.Leu956Val	p.L956V	ENST00000398665	NM_032482.2	956	Ctc/Gtc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222181	2222181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	95	807	1	ENST00000398665.3:c.3013C>T	p.Gln1005Ter	p.Q1005*	ENST00000398665	NM_032482.2	1005	Cag/Tag																																																																														
CIC	0	MSKCC	GRCh37	19	42794475	42794475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	62	825	0	ENST00000575354.2:c.1555G>A	p.Asp519Asn	p.D519N	ENST00000575354	NM_015125.3	519	Gat/Aat																																																																														
ALK	0	MSKCC	GRCh37	2	29416281	29416281	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	79	588	0	ENST00000389048.3:c.4672G>C	p.Glu1558Gln	p.E1558Q	ENST00000389048	NM_004304.4	1558	Gag/Cag																																																																														
PMS1	0	MSKCC	GRCh37	2	190742130	190742130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	43	483	0	ENST00000441310.2:c.2767C>A	p.His923Asn	p.H923N	ENST00000441310	NM_000534.4	923	Cat/Aat																																																																														
RAF1	0	MSKCC	GRCh37	3	12653520	12653520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1294	70	572	0	ENST00000251849.4:c.249G>T	p.Met83Ile	p.M83I	ENST00000251849	NM_002880.3	83	atG/atT																																																																														
TP63	0	MSKCC	GRCh37	3	189612142	189612142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1431	495	550	0	ENST00000264731.3:c.1894G>A	p.Glu632Lys	p.E632K	ENST00000264731	NM_003722.4	632	Gag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187535423	187535423	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	74	463	0	ENST00000441802.2:c.9151G>C	p.Asp3051His	p.D3051H	ENST00000441802	NM_005245.3	3051	Gac/Cac																																																																														
FAT1	0	MSKCC	GRCh37	4	187554912	187554912	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	44	485	0	ENST00000441802.2:c.4249C>G	p.Leu1417Val	p.L1417V	ENST00000441802	NM_005245.3	1417	Ctt/Gtt																																																																														
CARD11	0	MSKCC	GRCh37	7	2976688	2976688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	36	431	0	ENST00000396946.4:c.1324A>G	p.Ser442Gly	p.S442G	ENST00000396946	NM_032415.4	442	Agc/Ggc																																																																														
EGFR	0	MSKCC	GRCh37	7	55240811	55240811	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	89	796	0	ENST00000275493.2:c.2055G>C	p.Glu685Asp	p.E685D	ENST00000275493	NM_005228.3	685	gaG/gaC																																																																														
HGF	0	MSKCC	GRCh37	7	81334756	81334756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	62	489	0	ENST00000222390.5:c.1960G>C	p.Glu654Gln	p.E654Q	ENST00000222390	NM_000601.4	654	Gag/Cag																																																																														
RAD21	0	MSKCC	GRCh37	8	117874102	117874102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	51	467	0	ENST00000297338.2:c.352G>C	p.Asp118His	p.D118H	ENST00000297338	NM_006265.2	118	Gat/Cat																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139438542	139438542	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	80	711	0	ENST00000277541.6:c.74C>A	p.Ser25Tyr	p.S25Y	ENST00000277541	NM_017617.3	25	tCc/tAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76920185	76920185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	65	604	0	ENST00000373344.5:c.3892G>A	p.Glu1298Lys	p.E1298K	ENST00000373344	NM_000489.3	1298	Gaa/Aaa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100046	157100046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	12	133	0	ENST00000346085.5:c.983G>A	p.Gly328Glu	p.G328E	ENST00000346085	NM_020732.3	328	gGa/gAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	97	429	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	327	646	1	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	277	369	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911295	32911295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	269	597	2	ENST00000380152.3:c.2803G>A	p.Asp935Asn	p.D935N	ENST00000380152		935	Gat/Aat																																																																														
ATRX	0	MSKCC	GRCh37	X	76814313	76814313	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	88	352	1	ENST00000373344.5:c.6331C>T	p.Arg2111Ter	p.R2111*	ENST00000373344	NM_000489.3	2111	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	366	505	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	74	391	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																														
RET	0	MSKCC	GRCh37	10	43615539	43615539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	291	481	0	ENST00000355710.3:c.2618G>A	p.Arg873Gln	p.R873Q	ENST00000355710	NM_020975.4	873	cGg/cAg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	336	504	1	ENST00000245479.2:c.340G>C	p.Val114Leu	p.V114L	ENST00000245479	NM_000346.3	114	Gtg/Ctg																																																																														
JUN	0	MSKCC	GRCh37	1	59248091	59248091	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	254	247	2	ENST00000371222.2:c.652C>T	p.Gln218Ter	p.Q218*	ENST00000371222	NM_002228.3	218	Cag/Tag																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554196	63554197	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	364	653	0	ENST00000307078.5:c.542dup	p.Met182AspfsTer13	p.M182Dfs*13	ENST00000307078	NM_004655.3	181	gtg/gtTg																																																																														
TCF3	0	MSKCC	GRCh37	19	1650179	1650179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	73	657	0	ENST00000344749.5:c.69C>G	p.Ser23Arg	p.S23R	ENST00000344749	NM_001136139.2	23	agC/agG																																																																														
PTPRS	0	MSKCC	GRCh37	19	5286082	5286082	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200430287		P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	202	766	0	ENST00000357368.4:c.70G>A	p.Val24Ile	p.V24I	ENST00000357368	NM_002850.3	24	Gtt/Att																																																																														
SESN1	27244	MSKCC	GRCh37	6	109315795	109315798	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs779935597		P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	303	594	2	ENST00000436639.2:c.987_990del	p.Phe329LeufsTer10	p.F329Lfs*10	ENST00000436639	NM_014454.2	329	ttCTTT/tt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390975	139390975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	497	784	3	ENST00000277541.6:c.7216C>T	p.Gln2406Ter	p.Q2406*	ENST00000277541	NM_017617.3	2406	Caa/Taa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0027636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	341	722	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426373	49426373	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	467	908	0	ENST00000301067.7:c.12115G>T	p.Glu4039Ter	p.E4039*	ENST00000301067	NM_003482.3	4039	Gag/Tag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911203	32911203	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	261	642	0	ENST00000380152.3:c.2711G>C	p.Gly904Ala	p.G904A	ENST00000380152		904	gGa/gCa																																																																														
FLT4	0	MSKCC	GRCh37	5	180057800	180057800	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0027636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	159	366	0	ENST00000261937.6:c.156-1G>T		p.X52_splice	ENST00000261937	NM_182925.4	52																																																																															
PTCH1	0	MSKCC	GRCh37	9	98209622	98209622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	324	477	0	ENST00000331920.6:c.3916C>T	p.Pro1306Ser	p.P1306S	ENST00000331920	NM_000264.3	1306	Ccc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	2532	549	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	1376	786	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
TERT	0	MSKCC	GRCh37	5	1260672	1260672	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201272197		P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	147	654	0	ENST00000310581.5:c.2887G>A	p.Gly963Ser	p.G963S	ENST00000310581	NM_198253.2	963	Ggc/Agc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5258034	5258034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	321	428	1	ENST00000357368.4:c.700G>T	p.Val234Leu	p.V234L	ENST00000357368	NM_002850.3	234	Gtg/Ttg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356281	66356282	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	440	594	0	ENST00000273854.3:c.1215_1216del	p.Cys405Ter	p.C405*	ENST00000273854	NM_004439.5	405	tgTGag/tgag																																																																														
NTRK1	0	MSKCC	GRCh37	1	156841470	156841470	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	358	729	2	ENST00000524377.1:c.773T>A	p.Leu258His	p.L258H	ENST00000524377	NM_002529.3	258	cTc/cAc																																																																														
RET	0	MSKCC	GRCh37	10	43615117	43615117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	195	770	1	ENST00000355710.3:c.2531G>A	p.Arg844Gln	p.R844Q	ENST00000355710	NM_020975.4	844	cGg/cAg																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724286	112724286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	560	717	0	ENST00000369452.4:c.170C>T	p.Ser57Phe	p.S57F	ENST00000369452	NM_007373.3	57	tCc/tTc																																																																														
FLT1	0	MSKCC	GRCh37	13	29007964	29007964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	204	304	0	ENST00000282397.4:c.805C>A	p.Pro269Thr	p.P269T	ENST00000282397	NM_002019.4	269	Cct/Act																																																																														
TSHR	0	MSKCC	GRCh37	14	81609556	81609556	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	370	525	0	ENST00000298171.2:c.1154A>G	p.Tyr385Cys	p.Y385C	ENST00000298171	NM_000369.2	385	tAt/tGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68849653	68849653	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	431	583	0	ENST00000261769.5:c.1556A>T	p.Gln519Leu	p.Q519L	ENST00000261769	NM_004360.3	519	cAg/cTg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016654	12016654	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200798818		P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	280	390	0	ENST00000353533.5:c.790G>T	p.Ala264Ser	p.A264S	ENST00000353533	NM_003010.3	264	Gct/Tct																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223087	5223087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	513	753	1	ENST00000357368.4:c.2716G>T	p.Ala906Ser	p.A906S	ENST00000357368	NM_002850.3	906	Gcg/Tcg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5240307	5240307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	542	816	0	ENST00000357368.4:c.1607G>T	p.Arg536Met	p.R536M	ENST00000357368	NM_002850.3	536	aGg/aTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244133	5244133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	475	825	0	ENST00000357368.4:c.1349C>A	p.Pro450Gln	p.P450Q	ENST00000357368	NM_002850.3	450	cCg/cAg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727183	40727183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	150	559	0	ENST00000373198.4:c.3781C>A	p.Gln1261Lys	p.Q1261K	ENST00000373198	NM_133170.3	1261	Cag/Aag																																																																														
NCOA3	0	MSKCC	GRCh37	20	46267790	46267790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	483	601	0	ENST00000371998.3:c.2551C>T	p.Pro851Ser	p.P851S	ENST00000371998		851	Cca/Tca																																																																														
ERG	0	MSKCC	GRCh37	21	39817378	39817445	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGTCTGTCCATAGTC	GCTGGGGGTTGAGACAGCCAATCCTGCTGAGGGACGCGTGGGCTCATCTTGGAAGTCTGTCCATAGTC	-			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	321	557	0	ENST00000288319.7:c.118_185del	p.Asp40GlnfsTer9	p.D40Qfs*9	ENST00000288319	NM_182918.3	40	GACTATGGACAGACTTCCAAGATGAGCCCACGCGTCCCTCAGCAGGATTGGCTGTCTCAACCCCCAGCc/c																																																																														
KIT	0	MSKCC	GRCh37	4	55564455	55564455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	289	386	0	ENST00000288135.5:c.343G>T	p.Ala115Ser	p.A115S	ENST00000288135	NM_000222.2	115	Gcc/Tcc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467662	66467662	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	373	435	0	ENST00000273854.3:c.607G>T	p.Gly203Ter	p.G203*	ENST00000273854	NM_004439.5	203	Gga/Tga																																																																														
INPP4B	0	MSKCC	GRCh37	4	143067121	143067121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	365	441	2	ENST00000262992.4:c.1592G>T	p.Ser531Ile	p.S531I	ENST00000262992	NM_001101669.1	531	aGc/aTc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143129589	143129589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	364	437	0	ENST00000262992.4:c.1061C>A	p.Pro354His	p.P354H	ENST00000262992	NM_001101669.1	354	cCt/cAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187531091	187531091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	332	561	0	ENST00000441802.2:c.9932G>T	p.Gly3311Val	p.G3311V	ENST00000441802	NM_005245.3	3311	gGc/gTc																																																																														
PREX2	0	MSKCC	GRCh37	8	68939526	68939526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	125	510	0	ENST00000288368.4:c.511C>A	p.Gln171Lys	p.Q171K	ENST00000288368	NM_024870.2	171	Caa/Aaa																																																																														
PREX2	0	MSKCC	GRCh37	8	69021830	69021830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	589	675	1	ENST00000288368.4:c.3118G>A	p.Val1040Met	p.V1040M	ENST00000288368	NM_024870.2	1040	Gtg/Atg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8340361	8340361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	405	560	0	ENST00000356435.5:c.5235G>T	p.Lys1745Asn	p.K1745N	ENST00000356435		1745	aaG/aaT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341976	8341976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	187	342	0	ENST00000356435.5:c.4664C>A	p.Ala1555Glu	p.A1555E	ENST00000356435		1555	gCg/gAg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486014	8486014	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	381	600	0	ENST00000356435.5:c.2803G>C	p.Val935Leu	p.V935L	ENST00000356435		935	Gtc/Ctc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006589-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	446	684	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006589-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	221	516	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112175541	112175541	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006589-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	203	317	0	ENST00000257430.4:c.4251del	p.Ile1418Ter	p.I1418*	ENST00000257430	NM_000038.5	1417	aTt/at																																																																														
APC	0	MSKCC	GRCh37	5	112163696	112163697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006589-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	195	408	0	ENST00000257430.4:c.1620dupA	p.Gln541ThrfsTer19	p.Q541Tfs*19	ENST00000257430	NM_000038.5	540	tta/ttAa																																																																														
DNMT1	0	MSKCC	GRCh37	19	10254460	10254461	+	missense_variant	Missense_Mutation	DNP	CG	CG	AC			P-0006589-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			733	40	519	1	ENST00000340748.4:c.3049_3050delinsGT	p.Arg1017Val	p.R1017V	ENST00000340748		1017	CGg/GTg																																																																														
PREX2	0	MSKCC	GRCh37	8	68981282	68981282	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006589-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	307	361	1	ENST00000288368.4:c.1354C>T	p.Gln452Ter	p.Q452*	ENST00000288368	NM_024870.2	452	Caa/Taa																																																																														
PREX2	0	MSKCC	GRCh37	8	69028150	69028150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006589-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	101	701	0	ENST00000288368.4:c.3309C>A	p.Ser1103Arg	p.S1103R	ENST00000288368	NM_024870.2	1103	agC/agA																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	99	273	0	ENST00000324856.7:c.413C>G	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	296	656	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53241055	53241055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	110	574	0	ENST00000375401.3:c.1156G>C	p.Glu386Gln	p.E386Q	ENST00000375401	NM_004187.3	386	Gag/Cag																																																																														
RAD51C	0	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	124	466	0	ENST00000337432.4:c.61C>G	p.Pro21Ala	p.P21A	ENST00000337432	NM_058216.2	21	Cca/Gca																																																																														
TAP2	0	MSKCC	GRCh37	6	32805979	32805979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	137	682	0	ENST00000374899.4:c.32C>T	p.Ser11Phe	p.S11F	ENST00000374899	NM_018833.2	11	tCc/tTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105664	27105665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	187	383	0	ENST00000324856.7:c.5276dup	p.Met1759IlefsTer14	p.M1759Ifs*14	ENST00000324856	NM_006015.4	1759	atg/aTtg																																																																														
CDH1	0	MSKCC	GRCh37	16	68842363	68842363	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	288	576	0	ENST00000261769.5:c.426del	p.Asn144ThrfsTer71	p.N144Tfs*71	ENST00000261769	NM_004360.3	142	Ttt/tt																																																																														
SETD2	0	MSKCC	GRCh37	3	47165545	47165545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	213	481	0	ENST00000409792.3:c.581C>G	p.Pro194Arg	p.P194R	ENST00000409792	NM_014159.6	194	cCt/cGt																																																																														
SETD2	0	MSKCC	GRCh37	3	47165572	47165572	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	222	479	0	ENST00000409792.3:c.554C>A	p.Ser185Ter	p.S185*	ENST00000409792	NM_014159.6	185	tCa/tAa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161673	56161673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	82	453	0	ENST00000399503.3:c.1170G>T	p.Gln390His	p.Q390H	ENST00000399503	NM_005921.1	390	caG/caT																																																																														
SOX17	0	MSKCC	GRCh37	8	55372448	55372448	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	136	756	0	ENST00000297316.4:c.1138C>T	p.Gln380Ter	p.Q380*	ENST00000297316	NM_022454.3	380	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	133	523	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	221	704	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584787	48584787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	82	559	2	ENST00000342988.3:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000342988	NM_005359.5	289	Cag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730831	40730831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	69	673	0	ENST00000373198.4:c.3704G>A	p.Arg1235His	p.R1235H	ENST00000373198	NM_133170.3	1235	cGc/cAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76938776	76938776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	110	694	0	ENST00000373344.5:c.1972C>T	p.Arg658Cys	p.R658C	ENST00000373344	NM_000489.3	658	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	331	678	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467780	50467780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	380	568	2	ENST00000331340.3:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000331340	NM_006060.4	339	Gag/Aag																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885928	111885928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	272	577	0	ENST00000341259.2:c.1550G>T	p.Gly517Val	p.G517V	ENST00000341259	NM_005475.2	517	gGg/gTg																																																																														
APC	0	MSKCC	GRCh37	5	112175257	112175258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	147	329	0	ENST00000257430.4:c.3967dup	p.Val1323GlyfsTer9	p.V1323Gfs*9	ENST00000257430	NM_000038.5	1322	-/G																																																																														
IRF4	0	MSKCC	GRCh37	6	401492	401492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	193	461	1	ENST00000380956.4:c.814G>A	p.Glu272Lys	p.E272K	ENST00000380956	NM_001195286.1	272	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	989	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	264	704	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FLT3	0	MSKCC	GRCh37	13	28624327	28624327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	217	583	0	ENST00000241453.7:c.647A>G	p.Lys216Arg	p.K216R	ENST00000241453	NM_004119.2	216	aAg/aGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	143	632	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112175219	112175219	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	53	221	0	ENST00000257430.4:c.3928A>T	p.Lys1310Ter	p.K1310*	ENST00000257430	NM_000038.5	1310	Aag/Tag																																																																														
DNMT1	0	MSKCC	GRCh37	19	10250779	10250779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	142	630	0	ENST00000340748.4:c.3701G>A	p.Arg1234His	p.R1234H	ENST00000340748		1234	cGc/cAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739013	40739013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	378	551	1	ENST00000373198.4:c.3271C>T	p.Leu1091Phe	p.L1091F	ENST00000373198	NM_133170.3	1091	Ctc/Ttc																																																																														
BAP1	0	MSKCC	GRCh37	3	52441972	52441972	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0027623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	145	398	0	ENST00000460680.1:c.375+2T>C		p.X125_splice	ENST00000460680	NM_004656.3	125																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0027626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	109	718	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	58	560	1	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1614	148	1052	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16260581	16260581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	98	686	0	ENST00000375759.3:c.7846C>T	p.Pro2616Ser	p.P2616S	ENST00000375759	NM_015001.2	2616	Ccc/Tcc																																																																														
TET2	0	MSKCC	GRCh37	4	106156328	106156328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	44	410	0	ENST00000380013.4:c.1229C>T	p.Pro410Leu	p.P410L	ENST00000380013	NM_001127208.2	410	cCt/cTt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99500573	99500573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	115	597	2	ENST00000268035.6:c.4006C>T	p.Leu1336Phe	p.L1336F	ENST00000268035	NM_000875.3	1336	Ctc/Ttc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62326786	62326786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1324	115	824	2	ENST00000508582.2:c.3677C>T	p.Pro1226Leu	p.P1226L	ENST00000508582		1226	cCc/cTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187549873	187549873	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	72	543	0	ENST00000441802.2:c.4368T>A	p.Phe1456Leu	p.F1456L	ENST00000441802	NM_005245.3	1456	ttT/ttA																																																																														
RAD50	0	MSKCC	GRCh37	5	131895022	131895022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	57	459	0	ENST00000265335.6:c.176C>T	p.Pro59Leu	p.P59L	ENST00000265335		59	cCt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	105	583	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	219	790	2	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
NEGR1	0	MSKCC	GRCh37	1	72400822	72400822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	78	411	0	ENST00000357731.5:c.349A>G	p.Thr117Ala	p.T117A	ENST00000357731	NM_173808.2	117	Acg/Gcg																																																																														
CSF1R	0	MSKCC	GRCh37	5	149450021	149450021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	91	568	1	ENST00000286301.3:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000286301	NM_005211.3	399	cGa/cAa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575055	48575055	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	57	362	0	ENST00000342988.3:c.250-1G>C		p.X84_splice	ENST00000342988	NM_005359.5	84																																																																															
EPHB1	0	MSKCC	GRCh37	3	134967293	134967293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	142	728	1	ENST00000398015.3:c.2632C>A	p.Leu878Ile	p.L878I	ENST00000398015	NM_004441.4	878	Cta/Ata																																																																														
MTOR	0	MSKCC	GRCh37	1	11276228	11276228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	73	563	0	ENST00000361445.4:c.3094G>A	p.Asp1032Asn	p.D1032N	ENST00000361445	NM_004958.3	1032	Gat/Aat																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88649891	88649891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	44	454	0	ENST00000372037.3:c.140G>A	p.Gly47Glu	p.G47E	ENST00000372037	NM_004329.2	47	gGa/gAa																																																																														
SUFU	0	MSKCC	GRCh37	10	104353466	104353466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	67	778	2	ENST00000369902.3:c.671G>T	p.Arg224Leu	p.R224L	ENST00000369902	NM_016169.3	224	cGg/cTg																																																																														
FGF4	0	MSKCC	GRCh37	11	69589729	69589729	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	46	280	0	ENST00000168712.1:c.124G>T	p.Glu42Ter	p.E42*	ENST00000168712	NM_002007.2	42	Gag/Tag																																																																														
PGR	0	MSKCC	GRCh37	11	100922274	100922274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	64	558	0	ENST00000325455.5:c.2238C>G	p.Asp746Glu	p.D746E	ENST00000325455	NM_001202474.3	746	gaC/gaG																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478882	56478882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	261	838	1	ENST00000267101.3:c.338G>T	p.Gly113Val	p.G113V	ENST00000267101	NM_001982.3	113	gGg/gTg																																																																														
MDM2	0	MSKCC	GRCh37	12	69233524	69233536	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTATGGCCTGC	TCTTATGGCCTGC	-			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	94	458	0	ENST00000462284.1:c.1390_1402del	p.Met465HisfsTer6	p.M465Hfs*6	ENST00000462284	NM_002392.5	463	caTCTTATGGCCTGC/ca																																																																														
SETD8	0	MSKCC	GRCh37	12	123879747	123879747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	28	166	1	ENST00000330479.4:c.443C>T	p.Thr148Ile	p.T148I	ENST00000330479	NM_020382.3	148	aCc/aTc																																																																														
POLE	0	MSKCC	GRCh37	12	133225522	133225522	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	145	608	0	ENST00000320574.5:c.4142A>C	p.Tyr1381Ser	p.Y1381S	ENST00000320574	NM_006231.2	1381	tAt/tCt																																																																														
FLT3	0	MSKCC	GRCh37	13	28626686	28626686	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	102	456	0	ENST00000241453.7:c.610G>T	p.Glu204Ter	p.E204*	ENST00000241453	NM_004119.2	204	Gaa/Taa																																																																														
MGA	0	MSKCC	GRCh37	15	41961683	41961683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	89	493	0	ENST00000219905.7:c.591G>A	p.Met197Ile	p.M197I	ENST00000219905	NM_001164273.1	197	atG/atA																																																																														
NTRK3	0	MSKCC	GRCh37	15	88726682	88726682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	144	568	0	ENST00000360948.2:c.362G>T	p.Arg121Ile	p.R121I	ENST00000360948	NM_001012338.2	121	aGa/aTa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81969980	81969980	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	78	399	0	ENST00000359376.3:c.3049G>T	p.Ala1017Ser	p.A1017S	ENST00000359376	NM_002661.3	1017	Gca/Tca																																																																														
NF1	0	MSKCC	GRCh37	17	29562762	29562762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	103	490	0	ENST00000358273.4:c.3842C>G	p.Ala1281Gly	p.A1281G	ENST00000358273	NM_001042492.2	1281	gCc/gGc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602721	10602721	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	144	781	1	ENST00000171111.5:c.857A>T	p.Gln286Leu	p.Q286L	ENST00000171111	NM_203500.1	286	cAg/cTg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25505417	25505418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	121	494	0	ENST00000264709.3:c.340dup	p.Ala114GlyfsTer10	p.A114Gfs*10	ENST00000264709	NM_175629.2	114	gcc/gGcc																																																																														
PMS1	0	MSKCC	GRCh37	2	190728682	190728682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	73	498	0	ENST00000441310.2:c.2070G>T	p.Arg690Ser	p.R690S	ENST00000441310	NM_000534.4	690	agG/agT																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730916	40730916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	88	587	0	ENST00000373198.4:c.3619C>A	p.Arg1207Ser	p.R1207S	ENST00000373198	NM_133170.3	1207	Cgt/Agt																																																																														
RYBP	0	MSKCC	GRCh37	3	72427702	72427702	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	96	511	0	ENST00000477973.2:c.786A>T	p.Lys263Met	p.K263M	ENST00000477973	NM_012234.5	263	aAg/aTg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390928	89390928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	86	448	0	ENST00000336596.2:c.994G>T	p.Val332Phe	p.V332F	ENST00000336596	NM_005233.5	332	Gtt/Ttt																																																																														
KIT	0	MSKCC	GRCh37	4	55593617	55593617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	84	568	0	ENST00000288135.5:c.1683G>T	p.Glu561Asp	p.E561D	ENST00000288135	NM_000222.2	561	gaG/gaT																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32171552	32171552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	244	611	0	ENST00000375023.3:c.3226C>A	p.Pro1076Thr	p.P1076T	ENST00000375023	NM_004557.3	1076	Ccc/Acc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066704	94066704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	104	554	0	ENST00000369303.4:c.1055G>T	p.Ser352Ile	p.S352I	ENST00000369303	NM_004440.3	352	aGt/aTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874863	151874863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	88	372	0	ENST00000262189.6:c.7675A>G	p.Ile2559Val	p.I2559V	ENST00000262189	NM_170606.2	2559	Att/Gtt																																																																														
ARAF	0	MSKCC	GRCh37	X	47430289	47430289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	148	771	3	ENST00000377045.4:c.1564G>T	p.Val522Leu	p.V522L	ENST00000377045	NM_001654.4	522	Gtg/Ttg																																																																														
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	39	636	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	106	448	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ETV6	0	MSKCC	GRCh37	12	12038929	12038929	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	57	385	0	ENST00000396373.4:c.1222A>T	p.Arg408Trp	p.R408W	ENST00000396373	NM_001987.4	408	Agg/Tgg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	71	268	0	ENST00000327367.4:c.1265C>T	p.Ser422Phe	p.S422F	ENST00000327367	NM_005902.3	422	tCc/tTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46211490	46211490	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	24	232	0	ENST00000334344.6:c.456T>G	p.Phe152Leu	p.F152L	ENST00000334344	NM_152641.2	152	ttT/ttG																																																																														
RNF43	0	MSKCC	GRCh37	17	56492694	56492694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	38	317	0	ENST00000407977.2:c.245T>C	p.Leu82Ser	p.L82S	ENST00000407977		82	tTa/tCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0027646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	33	434	2	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106282	27106282	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	83	627	0	ENST00000324856.7:c.5893del	p.Thr1965ProfsTer50	p.T1965Pfs*50	ENST00000324856	NM_006015.4	1965	Acc/cc																																																																														
NF1	0	MSKCC	GRCh37	17	29528472	29528472	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	103	586	0	ENST00000358273.4:c.1229T>G	p.Leu410Arg	p.L410R	ENST00000358273	NM_001042492.2	410	cTg/cGg																																																																														
PREX2	0	MSKCC	GRCh37	8	68995553	68995553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	40	690	0	ENST00000288368.4:c.1957G>A	p.Asp653Asn	p.D653N	ENST00000288368	NM_024870.2	653	Gat/Aat																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0027417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	274	597	2	ENST00000256078.4:c.34_35delGGinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	177	560	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
ARID1B	0	MSKCC	GRCh37	6	157522359	157522359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	198	694	0	ENST00000346085.5:c.4631C>T	p.Pro1544Leu	p.P1544L	ENST00000346085	NM_020732.3	1544	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0027421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	118	541	3	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	53	705	1	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
TSHR	0	MSKCC	GRCh37	14	81574763	81574763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	34	534	0	ENST00000298171.2:c.659C>A	p.Ala220Glu	p.A220E	ENST00000298171	NM_000369.2	220	gCa/gAa																																																																														
TERT	0	MSKCC	GRCh37	5	1295198	1295198	+	upstream_gene_variant	5'Flank	SNP	A	A	C			P-0027421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	16	215	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	495	644	0	ENST00000269305.4:c.434T>G	p.Leu145Arg	p.L145R	ENST00000269305	NM_001126112.2	145	cTg/cGg																																																																														
JAK2	0	MSKCC	GRCh37	9	5090496	5090496	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	92	381	0	ENST00000381652.3:c.2812C>T	p.Arg938Ter	p.R938*	ENST00000381652	NM_004972.3	938	Cga/Tga																																																																														
ATM	0	MSKCC	GRCh37	11	108114846	108114846	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	84	377	0	ENST00000278616.4:c.662+1G>T		p.X221_splice	ENST00000278616	NM_000051.3	221																																																																															
CDH1	0	MSKCC	GRCh37	16	68842360	68842363	+	frameshift_variant	Frame_Shift_Del	DEL	ACAT	ACAT	-			P-0027466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	90	475	0	ENST00000261769.5:c.421_424del	p.Thr141PhefsTer73	p.T141Ffs*73	ENST00000261769	NM_004360.3	141	ACATtt/tt																																																																														
MSH3	0	MSKCC	GRCh37	5	80088610	80088610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	118	504	0	ENST00000265081.6:c.2602G>C	p.Asp868His	p.D868H	ENST00000265081	NM_002439.4	868	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	243	666	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	8	481	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
CARD11	0	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	114	512	3	ENST00000396946.4:c.1663dupC	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	103	266	0	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18276986	18276986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	90	451	0	ENST00000222254.8:c.1433G>A	p.Arg478His	p.R478H	ENST00000222254	NM_005027.3	478	cGt/cAt																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778100	27778100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	141	519	1	ENST00000369163.2:c.249G>T	p.Leu83Phe	p.L83F	ENST00000369163	NM_003536.2	83	ttG/ttT																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51436152	51436152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	66	388	0	ENST00000262662.1:c.112G>A	p.Gly38Arg	p.G38R	ENST00000262662		38	Gga/Aga																																																																														
IGF2	0	MSKCC	GRCh37	11	2154794	2154794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	135	779	1	ENST00000434045.2:c.427C>T	p.Pro143Ser	p.P143S	ENST00000434045	NM_001127598.1	143	Ccc/Tcc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18439843	18439843	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	32	433	0	ENST00000266497.5:c.745del	p.Cys249AlafsTer4	p.C249Afs*4	ENST00000266497		247	tcT/tc																																																																														
CXCR4	0	MSKCC	GRCh37	2	136873248	136873248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	103	320	0	ENST00000241393.3:c.250G>A	p.Asp84Asn	p.D84N	ENST00000241393	NM_003467.2	84	Gac/Aac																																																																														
MST1R	0	MSKCC	GRCh37	3	49939979	49939979	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	133	732	0	ENST00000296474.3:c.1064A>T	p.Asp355Val	p.D355V	ENST00000296474	NM_002447.2	355	gAt/gTt																																																																														
APC	0	MSKCC	GRCh37	5	112175229	112175238	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	CTAGGTCAGC	CTAGGTCAGC	TAAAATAAAATAAAATAAAATAAGATAAAATAAAATAAA			P-0027479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	32	212	0	ENST00000257430.4:c.3938_3947delinsTAAAATAAAATAAAATAAAATAAGATAAAATAAAATAAA	p.Thr1313IlefsTer3	p.T1313Ifs*3	ENST00000257430	NM_000038.5	1313	aCTAGGTCAGCt/aTAAAATAAAATAAAATAAAATAAGATAAAATAAAATAAAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0027523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	240	642	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0027524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	452	367	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900171	101900171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	143	223	0	ENST00000374994.4:c.605C>T	p.Ala202Val	p.A202V	ENST00000374994	NM_004612.2	202	gCg/gTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	170	436	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	170	436	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	170	436	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	256	384	1	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
KDM6A	0	MSKCC	GRCh37	X	44870214	44870215	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	298	192	0	ENST00000377967.4:c.398dup	p.Leu133PhefsTer12	p.L133Ffs*12	ENST00000377967	NM_021140.2	131	-/T																																																																														
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	118	208	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	109	438	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692831	89692831	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	33	201	0	ENST00000371953.3:c.315T>G	p.Cys105Trp	p.C105W	ENST00000371953	NM_000314.4	105	tgT/tgG																																																																														
TP53	0	MSKCC	GRCh37	17	7579871	7579886	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGGGGGCTCGACG	CAGAGGGGGCTCGACG	-			P-0027525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	181	598	1	ENST00000269305.4:c.27_42del	p.Ser9ArgfsTer30	p.S9Rfs*30	ENST00000269305	NM_001126112.2	9	agCGTCGAGCCCCCTCTG/ag																																																																														
JAK3	0	MSKCC	GRCh37	19	17949094	17949094	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	75	627	0	ENST00000458235.1:c.1547T>C	p.Ile516Thr	p.I516T	ENST00000458235	NM_000215.3	516	aTc/aCc																																																																														
NF2	0	MSKCC	GRCh37	22	30077472	30077472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	121	452	0	ENST00000338641.4:c.1619A>G	p.Asn540Ser	p.N540S	ENST00000338641	NM_000268.3	540	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	113	442	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
BARD1	0	MSKCC	GRCh37	2	215645676	215645676	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	155	368	0	ENST00000260947.4:c.922C>G	p.Leu308Val	p.L308V	ENST00000260947	NM_000465.2	308	Ctt/Gtt																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120574	94120574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	106	361	1	ENST00000369303.4:c.477C>A	p.Asp159Glu	p.D159E	ENST00000369303	NM_004440.3	159	gaC/gaA																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133323	38133323	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	197	458	0	ENST00000317025.8:c.4150T>G	p.Ser1384Ala	p.S1384A	ENST00000317025	NM_023034.1	1384	Tca/Gca																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	182	512	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	146	565	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	104	537	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag																																																																														
MTOR	0	MSKCC	GRCh37	1	11270894	11270894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	68	430	1	ENST00000361445.4:c.3631G>A	p.Val1211Met	p.V1211M	ENST00000361445	NM_004958.3	1211	Gtg/Atg																																																																														
TET1	0	MSKCC	GRCh37	10	70333721	70333721	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	40	432	0	ENST00000373644.4:c.1626C>G	p.Asp542Glu	p.D542E	ENST00000373644	NM_030625.2	542	gaC/gaG																																																																														
RB1	0	MSKCC	GRCh37	13	49039435	49039435	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	101	562	0	ENST00000267163.4:c.2420C>A	p.Ser807Ter	p.S807*	ENST00000267163	NM_000321.2	807	tCa/tAa																																																																														
PALB2	0	MSKCC	GRCh37	16	23647167	23647167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1260	75	645	0	ENST00000261584.4:c.700G>A	p.Asp234Asn	p.D234N	ENST00000261584	NM_024675.3	234	Gat/Aat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8376036	8376036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	66	311	0	ENST00000356435.5:c.4561G>T	p.Asp1521Tyr	p.D1521Y	ENST00000356435		1521	Gat/Tat																																																																														
BAP1	0	MSKCC	GRCh37	3	52440899	52440899	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	234	670	0	ENST00000460680.1:c.605G>C	p.Trp202Ser	p.W202S	ENST00000460680	NM_004656.3	202	tGg/tCg																																																																														
CTCF	0	MSKCC	GRCh37	16	67655359	67655359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	55	374	0	ENST00000264010.4:c.1222G>A	p.Glu408Lys	p.E408K	ENST00000264010	NM_006565.3	408	Gaa/Aaa																																																																														
TERT	0	MSKCC	GRCh37	5	1295173	1295173	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0027530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	41	422	0				ENST00000310581	NM_198253.2																																																																																
CSF1R	0	MSKCC	GRCh37	5	149460543	149460543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	63	614	0	ENST00000286301.3:c.94G>T	p.Val32Leu	p.V32L	ENST00000286301	NM_005211.3	32	Gtg/Ttg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	24	553	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0027531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	155	518	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
TP53	0	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	374	759	3	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
TSC1	0	MSKCC	GRCh37	9	135797314	135797314	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0027531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	25	328	0	ENST00000298552.3:c.555C>G	p.Tyr185Ter	p.Y185*	ENST00000298552	NM_001162426.1	185	taC/taG																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0027534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	108	322	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ATM	0	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	222	409	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106489	27106489	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	520	641	1	ENST00000324856.7:c.6100G>T	p.Glu2034Ter	p.E2034*	ENST00000324856	NM_006015.4	2034	Gag/Tag																																																																														
RAC1	0	MSKCC	GRCh37	7	6439802	6439802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	71	391	0	ENST00000356142.4:c.328G>C	p.Glu110Gln	p.E110Q	ENST00000356142	NM_018890.3	110	Gaa/Caa																																																																														
ATM	0	MSKCC	GRCh37	11	108225525	108225538	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTTTGACTCTAGA	TGTTTGACTCTAGA	-			P-0027534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	70	364	0	ENST00000278616.4:c.8787-11_8789del		p.X2929_splice	ENST00000278616	NM_000051.3	2929																																																																															
CD276	0	MSKCC	GRCh37	15	73996149	73996149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	252	776	0	ENST00000318443.5:c.883C>T	p.His295Tyr	p.H295Y	ENST00000318443	NM_001024736.1	295	Cac/Tac																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89355061	89355061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	164	561	0	ENST00000301030.4:c.619G>A	p.Glu207Lys	p.E207K	ENST00000301030	NM_001256183.1	207	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	135	513	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
MTOR	0	MSKCC	GRCh37	1	11188989	11188989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	31	385	0	ENST00000361445.4:c.5734G>A	p.Asp1912Asn	p.D1912N	ENST00000361445	NM_004958.3	1912	Gat/Aat																																																																														
CDH1	0	MSKCC	GRCh37	16	68842748	68842748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	121	366	0	ENST00000261769.5:c.684del	p.Tyr228Ter	p.Y228*	ENST00000261769	NM_004360.3	228	taC/ta																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029406	16029406	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	98	419	0	ENST00000268712.3:c.1624G>T	p.Glu542Ter	p.E542*	ENST00000268712	NM_006311.3	542	Gaa/Taa																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39542576	39542576	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	78	415	1	ENST00000262039.4:c.380T>A	p.Val127Asp	p.V127D	ENST00000262039	NM_002647.2	127	gTt/gAt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467710	66467710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	32	304	0	ENST00000273854.3:c.559G>T	p.Asp187Tyr	p.D187Y	ENST00000273854	NM_004439.5	187	Gat/Tat																																																																														
TAP2	0	MSKCC	GRCh37	6	32797274	32797274	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	45	610	0	ENST00000374899.4:c.1835A>C	p.Lys612Thr	p.K612T	ENST00000374899	NM_018833.2	612	aAa/aCa																																																																														
CARD11	0	MSKCC	GRCh37	7	2974126	2974126	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	73	421	0	ENST00000396946.4:c.1479C>A	p.Tyr493Ter	p.Y493*	ENST00000396946	NM_032415.4	493	taC/taA																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396731	139396731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	94	527	0	ENST00000277541.6:c.5377G>C	p.Gly1793Arg	p.G1793R	ENST00000277541	NM_017617.3	1793	Ggc/Cgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	271	533	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	78	489	1	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877876	151877876	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	155	342	0	ENST00000262189.6:c.7069G>T	p.Gly2357Ter	p.G2357*	ENST00000262189	NM_170606.2	2357	Gga/Tga																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	183	336	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																														
TP53	0	MSKCC	GRCh37	17	7573976	7573991	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGTTCCAAGGCCTC	TGAGTTCCAAGGCCTC	-			P-0027545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	178	651	0	ENST00000269305.4:c.1036_1051del	p.Glu346ArgfsTer19	p.E346Rfs*19	ENST00000269305	NM_001126112.2	346	GAGGCCTTGGAACTCAag/ag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56184096	56184097	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0027545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	98	313	0	ENST00000399503.3:c.4304_4306dup	p.Val1435dup	p.V1435dup	ENST00000399503	NM_005921.1	1435	agt/agTGTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	383	377	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	438	507	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	144	223	0	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843535	156843535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	331	512	2	ENST00000524377.1:c.961G>A	p.Val321Met	p.V321M	ENST00000524377	NM_002529.3	321	Gtg/Atg																																																																														
BCOR	0	MSKCC	GRCh37	X	39932171	39932171	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	412	578	5	ENST00000378444.4:c.2428C>T	p.Arg810Ter	p.R810*	ENST00000378444	NM_001123385.1	810	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175706	112175706	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	186	254	0	ENST00000257430.4:c.4415del	p.Val1472GlufsTer35	p.V1472Efs*35	ENST00000257430	NM_000038.5	1472	gTa/ga																																																																														
MTOR	0	MSKCC	GRCh37	1	11174420	11174420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	853	495	0	ENST00000361445.4:c.7255G>A	p.Glu2419Lys	p.E2419K	ENST00000361445	NM_004958.3	2419	Gaa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717741	89717741	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	244	299	0	ENST00000371953.3:c.766G>T	p.Glu256Ter	p.E256*	ENST00000371953	NM_000314.4	256	Gag/Tag																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88659596	88659596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	300	415	2	ENST00000372037.3:c.379A>G	p.Thr127Ala	p.T127A	ENST00000372037	NM_004329.2	127	Acc/Gcc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279920	18279920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	535	558	2	ENST00000222254.8:c.2003G>A	p.Cys668Tyr	p.C668Y	ENST00000222254	NM_005027.3	668	tGc/tAc																																																																														
RASA1	0	MSKCC	GRCh37	5	86675579	86675579	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	120	233	0	ENST00000274376.6:c.2515G>T	p.Glu839Ter	p.E839*	ENST00000274376	NM_002890.2	839	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	314	506	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178948100	178948100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	174	197	0	ENST00000263967.3:c.2872C>A	p.Gln958Lys	p.Q958K	ENST00000263967	NM_006218.2	958	Cag/Aag																																																																														
CSDE1	0	MSKCC	GRCh37	1	115275358	115275358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	160	474	1	ENST00000438362.2:c.1055C>T	p.Ser352Phe	p.S352F	ENST00000438362	NM_001242891.1	352	tCc/tTc																																																																														
FLT3	0	MSKCC	GRCh37	13	28626681	28626681	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0027548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	88	299	0	ENST00000241453.7:c.614+1G>T		p.X205_splice	ENST00000241453	NM_004119.2	205																																																																															
NOTCH3	0	MSKCC	GRCh37	19	15292393	15292393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	14	519	0	ENST00000263388.2:c.2786G>A	p.Ser929Asn	p.S929N	ENST00000263388	NM_000435.2	929	aGc/aAc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149441075	149441075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	220	594	2	ENST00000286301.3:c.1837G>T	p.Val613Leu	p.V613L	ENST00000286301	NM_005211.3	613	Gtg/Ttg																																																																														
SMO	0	MSKCC	GRCh37	7	128851931	128851931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	293	536	0	ENST00000249373.3:c.2003G>A	p.Arg668His	p.R668H	ENST00000249373	NM_005631.4	668	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	59	455	7	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	51	433	4	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	59	470	6	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16040642	16040642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	96	368	0	ENST00000268712.3:c.1492C>T	p.Arg498Cys	p.R498C	ENST00000268712	NM_006311.3	498	Cgc/Tgc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748338	43748338	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	74	569	8	ENST00000382044.4:c.2468C>G	p.Ser823Ter	p.S823*	ENST00000382044	NM_001141980.1	823	tCa/tGa																																																																														
SOX9	0	MSKCC	GRCh37	17	70120254	70120254	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	553	749	21	ENST00000245479.2:c.1257del	p.Tyr420ThrfsTer50	p.Y420Tfs*50	ENST00000245479	NM_000346.3	419	gCc/gc																																																																														
ERCC3	0	MSKCC	GRCh37	2	128046396	128046396	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	32	361	5	ENST00000285398.2:c.867C>A	p.Tyr289Ter	p.Y289*	ENST00000285398	NM_000122.1	289	taC/taA																																																																														
EZH2	0	MSKCC	GRCh37	7	148511205	148511205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	79	405	3	ENST00000320356.2:c.1697G>A	p.Arg566His	p.R566H	ENST00000320356	NM_004456.4	566	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	57	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	94	454	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974744	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0027553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	36	262	0	ENST00000304494.5:c.52_83del	p.Thr18AlafsTer15	p.T18Afs*15	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTg/g																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974744	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0027553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	36	262	0	ENST00000304494.5:c.52_83del	p.Thr18AlafsTer15	p.T18Afs*15	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTg/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	83	452	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MLH1	0	MSKCC	GRCh37	3	37067192	37067192	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201673334		P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	79	366	0	ENST00000231790.2:c.1103C>T	p.Ser368Leu	p.S368L	ENST00000231790	NM_000249.3	368	tCg/tTg																																																																														
RIT1	0	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	115	457	1	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18650562	18650562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	73	343	0	ENST00000266497.5:c.2773G>A	p.Asp925Asn	p.D925N	ENST00000266497		925	Gat/Aat																																																																														
KDM5A	0	MSKCC	GRCh37	12	402057	402057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	88	367	0	ENST00000399788.2:c.4734G>C	p.Glu1578Asp	p.E1578D	ENST00000399788	NM_001042603.1	1578	gaG/gaC																																																																														
PTPN11	0	MSKCC	GRCh37	12	112924285	112924285	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	127	446	0	ENST00000351677.2:c.1231A>G	p.Thr411Ala	p.T411A	ENST00000351677	NM_002834.3	411	Acg/Gcg																																																																														
KIT	0	MSKCC	GRCh37	4	55573344	55573344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	87	410	0	ENST00000288135.5:c.1006G>C	p.Glu336Gln	p.E336Q	ENST00000288135	NM_000222.2	336	Gaa/Caa																																																																														
INPP4B	0	MSKCC	GRCh37	4	142950031	142950031	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	85	381	0	ENST00000262992.4:c.2679C>G	p.Ile893Met	p.I893M	ENST00000262992	NM_001101669.1	893	atC/atG																																																																														
AR	0	MSKCC	GRCh37	X	66765955	66765955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	171	621	1	ENST00000374690.3:c.967G>A	p.Glu323Lys	p.E323K	ENST00000374690	NM_000044.3	323	Gag/Aag																																																																														
MED12	0	MSKCC	GRCh37	X	70344096	70344098	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0027554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	140	582	0	ENST00000374080.3:c.1835_1837del	p.Asn612del	p.N612del	ENST00000374080		611	cACAac/cac																																																																														
ATR	0	MSKCC	GRCh37	3	142204030	142204030	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	305	635	0	ENST00000350721.4:c.6173T>C	p.Met2058Thr	p.M2058T	ENST00000350721	NM_001184.3	2058	aTg/aCg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	437	672	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	367	487	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0027625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	143	391	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	351	486	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	351	486	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	351	486	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
LATS1	0	MSKCC	GRCh37	6	150001524	150001524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	390	533	1	ENST00000253339.5:c.2080C>T	p.Arg694Cys	p.R694C	ENST00000253339		694	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	96	710	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0027627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	77	633	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
ARID1A	0	MSKCC	GRCh37	1	27022898	27022950	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCC	GCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCC	-			P-0027627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	16	73	0	ENST00000324856.7:c.9_61del	p.Gln4LeufsTer89	p.Q4Lfs*89	ENST00000324856	NM_006015.4	2	GCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCCg/g																																																																														
REL	0	MSKCC	GRCh37	2	61147181	61147182	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0027627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	69	477	0	ENST00000295025.8:c.860dup	p.Tyr287Ter	p.Y287*	ENST00000295025	NM_002908.2	287	tac/tAac																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273066	18273066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	52	700	0	ENST00000222254.8:c.956G>A	p.Gly319Glu	p.G319E	ENST00000222254	NM_005027.3	319	gGa/gAa																																																																														
RAD50	0	MSKCC	GRCh37	5	131923776	131923776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	109	446	0	ENST00000265335.6:c.1046A>G	p.Glu349Gly	p.E349G	ENST00000265335		349	gAa/gGa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123688	11123688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	182	762	0	ENST00000344626.4:c.2338G>A	p.Glu780Lys	p.E780K	ENST00000344626	NM_003072.3	780	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	159	659	1	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
AKT3	0	MSKCC	GRCh37	1	243778429	243778429	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	160	570	0	ENST00000263826.5:c.596T>C	p.Val199Ala	p.V199A	ENST00000263826	NM_005465.4	199	gTa/gCa																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9778899	9778899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	205	731	0	ENST00000377346.4:c.1168C>T	p.Leu390Phe	p.L390F	ENST00000377346	NM_005026.3	390	Ctc/Ttc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932083	36932083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	203	569	0	ENST00000361632.4:c.2386C>T	p.Pro796Ser	p.P796S	ENST00000361632		796	Ccc/Tcc																																																																														
MPL	0	MSKCC	GRCh37	1	43805121	43805121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	196	679	1	ENST00000372470.3:c.571G>A	p.Glu191Lys	p.E191K	ENST00000372470	NM_005373.2	191	Gaa/Aaa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	298	798	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
CSDE1	0	MSKCC	GRCh37	1	115263315	115263315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	282	755	0	ENST00000438362.2:c.2035C>T	p.Pro679Ser	p.P679S	ENST00000438362	NM_001242891.1	679	Cca/Tca																																																																														
RIT1	0	MSKCC	GRCh37	1	155874285	155874285	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	242	522	0	ENST00000368323.3:c.246T>A	p.Phe82Leu	p.F82L	ENST00000368323	NM_006912.5	82	ttT/ttA																																																																														
DDR2	0	MSKCC	GRCh37	1	162725057	162725057	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	198	481	0	ENST00000367921.3:c.529T>G	p.Cys177Gly	p.C177G	ENST00000367921	NM_006182.2	177	Tgt/Ggt																																																																														
DDR2	0	MSKCC	GRCh37	1	162729737	162729737	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	269	643	1	ENST00000367921.3:c.823T>A	p.Phe275Ile	p.F275I	ENST00000367921	NM_006182.2	275	Ttt/Att																																																																														
PARP1	0	MSKCC	GRCh37	1	226567300	226567300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			97	241	673	0	ENST00000366794.5:c.1586G>A	p.Gly529Glu	p.G529E	ENST00000366794	NM_001618.3	529	gGa/gAa																																																																														
FGF4	0	MSKCC	GRCh37	11	69589784	69589784	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			46	27	135	1	ENST00000168712.1:c.69G>A	p.Trp23Ter	p.W23*	ENST00000168712	NM_002007.2	23	tgG/tgA																																																																														
EED	0	MSKCC	GRCh37	11	85967550	85967550	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			329	231	460	0	ENST00000263360.6:c.548T>A	p.Ile183Lys	p.I183K	ENST00000263360	NM_003797.3	183	aTa/aAa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375152	118375152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			72	223	466	0	ENST00000534358.1:c.8545C>T	p.Pro2849Ser	p.P2849S	ENST00000534358	NM_005933.3	2849	Cct/Tct																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375923	118375923	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			119	249	572	1	ENST00000534358.1:c.9316C>T	p.Gln3106Ter	p.Q3106*	ENST00000534358	NM_005933.3	3106	Caa/Taa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435566	18435566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	199	338	0	ENST00000266497.5:c.551G>C	p.Ser184Thr	p.S184T	ENST00000266497		184	aGt/aCt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18656272	18656272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	227	686	0	ENST00000266497.5:c.2951G>A	p.Gly984Glu	p.G984E	ENST00000266497		984	gGa/gAa																																																																														
ARID2	0	MSKCC	GRCh37	12	46230638	46230641	+	missense_variant	Missense_Mutation	ONP	TTTC	TTTC	CTTT			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			345	256	656	0	ENST00000334344.6:c.887_890delinsCTTT	p.Leu296_Ser297delinsProPhe	p.L296_S297delinsPF	ENST00000334344	NM_152641.2	296	cTTTCc/cCTTTc																																																																														
GLI1	0	MSKCC	GRCh37	12	57861246	57861246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			277	218	644	0	ENST00000228682.2:c.1043G>A	p.Arg348Gln	p.R348Q	ENST00000228682	NM_005269.2	348	cGa/cAa																																																																														
RAD51B	0	MSKCC	GRCh37	14	68352667	68352667	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	284	547	0	ENST00000487270.1:c.534T>A	p.His178Gln	p.H178Q	ENST00000487270	NM_133509.3	178	caT/caA																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675097	40675097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	259	863	0	ENST00000249776.8:c.61G>A	p.Glu21Lys	p.E21K	ENST00000249776	NM_033286.3	21	Gag/Aag																																																																														
MGA	0	MSKCC	GRCh37	15	42059474	42059474	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	125	358	0	ENST00000219905.7:c.9194A>T	p.Lys3065Ile	p.K3065I	ENST00000219905	NM_001164273.1	3065	aAa/aTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857482	9857482	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148827608		P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	154	466	0	ENST00000330684.3:c.3919C>T	p.Pro1307Ser	p.P1307S	ENST00000330684	NM_001134407.1	1307	Ccc/Tcc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9984848	9984848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			288	211	613	1	ENST00000330684.3:c.1117G>A	p.Glu373Lys	p.E373K	ENST00000330684	NM_001134407.1	373	Gaa/Aaa																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7979989	7979990	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	180	717	2	ENST00000319144.4:c.1347_1348delinsAA	p.Gly450Arg	p.G450R	ENST00000319144	NM_001139.2	449	ggGGgg/ggAAgg																																																																														
NF1	0	MSKCC	GRCh37	17	29560230	29560231	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	GG	GG	AA			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			44	87	259	1	ENST00000358273.4:c.3707_3708delinsAA	p.Trp1236Ter	p.W1236*	ENST00000358273	NM_001042492.2	1236	tGG/tAA																																																																														
BRCA1	0	MSKCC	GRCh37	17	41201146	41201146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	226	813	0	ENST00000357654.3:c.5398del	p.Gly1801AlafsTer33	p.G1801Afs*33	ENST00000357654	NM_007294.3	1800	Ctt/tt																																																																														
TCF3	0	MSKCC	GRCh37	19	1622363	1622363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	208	893	1	ENST00000344749.5:c.601C>T	p.Pro201Ser	p.P201S	ENST00000344749	NM_001136139.2	201	Ccg/Tcg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271976	15271976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	392	733	0	ENST00000263388.2:c.6463G>A	p.Gly2155Arg	p.G2155R	ENST00000263388	NM_000435.2	2155	Gga/Aga																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15284907	15284907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	228	930	3	ENST00000263388.2:c.4708C>T	p.Arg1570Cys	p.R1570C	ENST00000263388	NM_000435.2	1570	Cgt/Tgt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213965	36213965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	241	942	2	ENST00000222270.7:c.2791G>A	p.Gly931Ser	p.G931S	ENST00000222270	NM_014727.1	931	Ggc/Agc																																																																														
PAK7	0	MSKCC	GRCh37	20	9520168	9520168	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	178	532	0	ENST00000353224.5:c.2101A>T	p.Lys701Ter	p.K701*	ENST00000353224	NM_177990.2	701	Aaa/Taa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561439	9561439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	197	632	0	ENST00000353224.5:c.343C>T	p.His115Tyr	p.H115Y	ENST00000353224	NM_177990.2	115	Cac/Tac																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827993	40827993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	152	550	0	ENST00000373198.4:c.2435G>A	p.Gly812Glu	p.G812E	ENST00000373198	NM_133170.3	812	gGa/gAa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171760	36171760	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	154	392	0	ENST00000300305.3:c.806-1G>A		p.X269_splice	ENST00000300305		269																																																																															
MST1	0	MSKCC	GRCh37	3	49723109	49723109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	165	564	0	ENST00000449682.2:c.1307C>T	p.Pro436Leu	p.P436L	ENST00000449682	NM_020998.3	436	cCa/cTa																																																																														
MST1	0	MSKCC	GRCh37	3	49723319	49723319	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			42	21	91	0	ENST00000449682.2:c.1224G>A	p.Trp408Ter	p.W408*	ENST00000449682	NM_020998.3	408	tgG/tgA																																																																														
MST1R	0	MSKCC	GRCh37	3	49932644	49932644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	212	761	0	ENST00000296474.3:c.3227C>T	p.Pro1076Leu	p.P1076L	ENST00000296474	NM_002447.2	1076	cCc/cTc																																																																														
MST1R	0	MSKCC	GRCh37	3	49935601	49935601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	243	785	0	ENST00000296474.3:c.1763C>T	p.Thr588Ile	p.T588I	ENST00000296474	NM_002447.2	588	aCc/aTc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390946	89390946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	181	618	0	ENST00000336596.2:c.1012G>A	p.Glu338Lys	p.E338K	ENST00000336596	NM_005233.5	338	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	95	502	0				ENST00000310581	NM_198253.2																																																																																
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	132	278	0	ENST00000257430.4:c.3925G>A	p.Glu1309Lys	p.E1309K	ENST00000257430	NM_000038.5	1309	Gaa/Aaa																																																																														
FLT4	0	MSKCC	GRCh37	5	180043441	180043441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56310180		P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	176	862	0	ENST00000261937.6:c.3145G>A	p.Asp1049Asn	p.D1049N	ENST00000261937	NM_182925.4	1049	Gac/Aac																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839874	27839874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	204	838	0	ENST00000328488.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000328488	NM_003533.2	74	Gag/Aag																																																																														
MDC1	0	MSKCC	GRCh37	6	30673803	30673803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	216	587	0	ENST00000376406.3:c.3157C>T	p.Leu1053Phe	p.L1053F	ENST00000376406	NM_014641.2	1053	Ctt/Ttt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188814	32188814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	175	782	0	ENST00000375023.3:c.740G>A	p.Gly247Asp	p.G247D	ENST00000375023	NM_004557.3	247	gGc/gAc																																																																														
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	275	584	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
EGFR	0	MSKCC	GRCh37	7	55242449	55242449	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	183	625	0	ENST00000275493.2:c.2220del	p.Val742SerfsTer6	p.V742Sfs*6	ENST00000275493	NM_005228.3	740	aTt/at																																																																														
MET	0	MSKCC	GRCh37	7	116435763	116435763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	241	714	1	ENST00000397752.3:c.3853C>T	p.Pro1285Ser	p.P1285S	ENST00000397752	NM_000245.2	1285	Cct/Tct																																																																														
BRAF	0	MSKCC	GRCh37	7	140434555	140434555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			135	138	229	0	ENST00000288602.6:c.2143G>A	p.Glu715Lys	p.E715K	ENST00000288602	NM_004333.4	715	Gag/Aag																																																																														
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	235	519	1	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																														
RAD21	0	MSKCC	GRCh37	8	117862986	117862986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	305	595	0	ENST00000297338.2:c.1491G>A	p.Met497Ile	p.M497I	ENST00000297338	NM_006265.2	497	atG/atA																																																																														
PTPRD	0	MSKCC	GRCh37	9	8492889	8492889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	160	607	0	ENST00000356435.5:c.2440C>T	p.Pro814Ser	p.P814S	ENST00000356435		814	Ccc/Tcc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8507381	8507381	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	153	460	1	ENST00000356435.5:c.1597T>A	p.Leu533Met	p.L533M	ENST00000356435		533	Ttg/Atg																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915886	127915886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	263	693	0	ENST00000373547.4:c.595C>T	p.Pro199Ser	p.P199S	ENST00000373547	NM_002721.4	199	Cct/Tct																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402421	139402421	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	70	782	0	ENST00000277541.6:c.3496G>T	p.Gly1166Cys	p.G1166C	ENST00000277541	NM_017617.3	1166	Ggc/Tgc																																																																														
STAG2	0	MSKCC	GRCh37	X	123195669	123195669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			65	242	281	1	ENST00000218089.9:c.1583C>T	p.Thr528Ile	p.T528I	ENST00000218089	NM_001042749.1	528	aCc/aTc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860053	152860055	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0001756-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			42	214	334	0	ENST00000406277.2:c.373_375del	p.Leu125del	p.L125del	ENST00000406277	NM_152274.4	125	CTC/-																																																																														
RB1	0	MSKCC	GRCh37	13	48954222	48954222	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0024182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	49	460	0	ENST00000267163.4:c.1421+2T>A		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
MEN1	0	MSKCC	GRCh37	11	64575051	64575051	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	231	565	0	ENST00000337652.1:c.771del	p.Ser258ArgfsTer28	p.S258Rfs*28	ENST00000337652	NM_130803.2	257	gaC/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	70	844	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	40	808	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																														
CBL	0	MSKCC	GRCh37	11	119142475	119142475	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	336	610	0	ENST00000264033.4:c.474del	p.Phe158LeufsTer8	p.F158Lfs*8	ENST00000264033	NM_005188.3	158	ttC/tt																																																																														
MGA	0	MSKCC	GRCh37	15	42058866	42058866	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	232	463	3	ENST00000219905.7:c.8589del	p.Phe2863LeufsTer22	p.F2863Lfs*22	ENST00000219905	NM_001164273.1	2862	gcT/gc																																																																														
RBM10	0	MSKCC	GRCh37	X	47039290	47039290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	146	983	3	ENST00000329236.7:c.682C>T	p.Arg228Cys	p.R228C	ENST00000329236	NM_001204466.1	228	Cgc/Tgc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807914	3807914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	57	877	0	ENST00000262367.5:c.3505C>T	p.Arg1169Cys	p.R1169C	ENST00000262367	NM_004380.2	1169	Cgc/Tgc																																																																														
JUN	0	MSKCC	GRCh37	1	59248525	59248525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	178	888	0	ENST00000371222.2:c.218C>T	p.Ser73Leu	p.S73L	ENST00000371222	NM_002228.3	73	tCg/tTg																																																																														
BLM	0	MSKCC	GRCh37	15	91298070	91298070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	189	702	0	ENST00000355112.3:c.989G>A	p.Arg330Lys	p.R330K	ENST00000355112	NM_000057.2	330	aGa/aAa																																																																														
CYLD	0	MSKCC	GRCh37	16	50785527	50785527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	170	784	0	ENST00000398568.2:c.517G>A	p.Gly173Ser	p.G173S	ENST00000398568	NM_001042412.1	173	Ggt/Agt																																																																														
FANCA	0	MSKCC	GRCh37	16	89838103	89838103	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	536	826	0	ENST00000389301.3:c.2134G>T	p.Glu712Ter	p.E712*	ENST00000389301	NM_000135.2	712	Gag/Tag																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39535278	39535278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	78	412	0	ENST00000262039.4:c.22C>T	p.His8Tyr	p.H8Y	ENST00000262039	NM_002647.2	8	Cac/Tac																																																																														
FAT1	0	MSKCC	GRCh37	4	187549701	187549701	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	154	747	0	ENST00000441802.2:c.4540C>G	p.Leu1514Val	p.L1514V	ENST00000441802	NM_005245.3	1514	Ctc/Gtc																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225626	26225626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	649	834	0	ENST00000360408.1:c.244G>A	p.Asp82Asn	p.D82N	ENST00000360408	NM_003532.2	82	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	157	692	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
FLT1	0	MSKCC	GRCh37	13	28896990	28896990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	75	547	1	ENST00000282397.4:c.2890G>A	p.Glu964Lys	p.E964K	ENST00000282397	NM_002019.4	964	Gaa/Aaa																																																																														
ATRX	0	MSKCC	GRCh37	X	76855202	76855207	+	stop_gained,frameshift_variant,splice_region_variant	Nonsense_Mutation	DEL	TTGTAT	TTGTAT	C			P-0024791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	52	634	0	ENST00000373344.5:c.5780_5785delinsG	p.Tyr1927Ter	p.Y1927*	ENST00000373344	NM_000489.3	1927	tATACAAaa/tGaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	74	426	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	45	212	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	126	590	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0025688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	62	302	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PAK7	0	MSKCC	GRCh37	20	9561309	9561309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	47	389	0	ENST00000353224.5:c.473C>T	p.Pro158Leu	p.P158L	ENST00000353224	NM_177990.2	158	cCg/cTg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9777676	9777676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	122	529	0	ENST00000377346.4:c.1012C>T	p.Arg338Trp	p.R338W	ENST00000377346	NM_005026.3	338	Cgg/Tgg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	70	368	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066648	94066648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	83	504	0	ENST00000369303.4:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000369303	NM_004440.3	371	Cgg/Tgg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52620674	52620674	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	63	303	0	ENST00000394830.3:c.3079C>T	p.Arg1027Ter	p.R1027*	ENST00000394830	NM_018313.4	1027	Cga/Tga																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828384	72828384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	70	429	1	ENST00000268489.5:c.8197C>T	p.Arg2733Cys	p.R2733C	ENST00000268489	NM_006885.3	2733	Cgt/Tgt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	59	517	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	53	299	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	27	289	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	100	610	11	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18278061	18278061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	94	607	0	ENST00000222254.8:c.1681A>G	p.Asn561Asp	p.N561D	ENST00000222254	NM_005027.3	561	Aac/Gac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	59	571	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																														
SYK	0	MSKCC	GRCh37	9	93606382	93606382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	55	572	0	ENST00000375746.1:c.202C>T	p.Arg68Trp	p.R68W	ENST00000375746	NM_001174167.1	68	Cgg/Tgg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	77	502	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	93	672	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134960032	134960032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	49	495	0	ENST00000398015.3:c.2389G>A	p.Ala797Thr	p.A797T	ENST00000398015	NM_004441.4	797	Gcc/Acc																																																																														
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	30	238	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																														
NUP93	0	MSKCC	GRCh37	16	56832410	56832410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	29	406	0	ENST00000308159.5:c.320A>G	p.Asp107Gly	p.D107G	ENST00000308159	NM_014669.4	107	gAc/gGc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878596	151878596	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	52	489	4	ENST00000262189.6:c.6349del	p.Ser2117ProfsTer26	p.S2117Pfs*26	ENST00000262189	NM_170606.2	2117	Tcc/cc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433689	49433689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	108	801	1	ENST00000301067.7:c.7864G>A	p.Asp2622Asn	p.D2622N	ENST00000301067	NM_003482.3	2622	Gac/Aac																																																																														
CARM1	0	MSKCC	GRCh37	19	11027412	11027412	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	107	694	1	ENST00000327064.4:c.979C>T	p.Arg327Ter	p.R327*	ENST00000327064	NM_199141.1	327	Cga/Tga																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350006	89350006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	63	511	1	ENST00000301030.4:c.2944G>A	p.Glu982Lys	p.E982K	ENST00000301030	NM_001256183.1	982	Gag/Aag																																																																														
ATR	0	MSKCC	GRCh37	3	142188343	142188343	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	27	469	0	ENST00000350721.4:c.6388A>G	p.Thr2130Ala	p.T2130A	ENST00000350721	NM_001184.3	2130	Aca/Gca																																																																														
PTPRS	0	MSKCC	GRCh37	19	5245820	5245820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	95	768	2	ENST00000357368.4:c.955G>A	p.Val319Ile	p.V319I	ENST00000357368	NM_002850.3	319	Gtc/Atc																																																																														
IRS1	0	MSKCC	GRCh37	2	227662610	227662610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	57	410	1	ENST00000305123.5:c.845T>C	p.Val282Ala	p.V282A	ENST00000305123	NM_005544.2	282	gTc/gCc																																																																														
KDR	0	MSKCC	GRCh37	4	55955920	55955920	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	58	475	0	ENST00000263923.4:c.3242T>C	p.Val1081Ala	p.V1081A	ENST00000263923	NM_002253.2	1081	gTg/gCg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832266	72832266	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	68	379	0	ENST00000268489.5:c.4315C>T	p.Arg1439Ter	p.R1439*	ENST00000268489	NM_006885.3	1439	Cga/Tga																																																																														
ID3	0	MSKCC	GRCh37	1	23885673	23885673	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	108	493	0	ENST00000374561.5:c.245T>C	p.Val82Ala	p.V82A	ENST00000374561	NM_002167.4	82	gTa/gCa																																																																														
RAD54L	0	MSKCC	GRCh37	1	46743866	46743866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	69	604	0	ENST00000371975.4:c.2156T>C	p.Val719Ala	p.V719A	ENST00000371975	NM_003579.3	719	gTa/gCa																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166413	118166413	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	29	324	0	ENST00000369448.3:c.923T>C	p.Met308Thr	p.M308T	ENST00000369448	NM_017709.3	308	aTg/aCg																																																																														
IKBKE	0	MSKCC	GRCh37	1	206650046	206650046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	51	521	0	ENST00000367120.3:c.566T>C	p.Val189Ala	p.V189A	ENST00000367120	NM_014002.3	189	gTg/gCg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63829477	63829477	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	37	349	0	ENST00000279873.7:c.1120T>C	p.Trp374Arg	p.W374R	ENST00000279873	NM_032199.2	374	Tgg/Cgg																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88681341	88681341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	14	175	1	ENST00000372037.3:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000372037	NM_004329.2	411	Gaa/Aaa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123263346	123263346	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	58	433	2	ENST00000358487.5:c.1397A>T	p.Tyr466Phe	p.Y466F	ENST00000358487	NM_000141.4	466	tAt/tTt																																																																														
SESN3	0	MSKCC	GRCh37	11	94918457	94918457	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	49	564	0	ENST00000536441.1:c.725A>G	p.Asn242Ser	p.N242S	ENST00000536441	NM_144665.3	242	aAc/aGc																																																																														
ATM	0	MSKCC	GRCh37	11	108106526	108106526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	66	356	0	ENST00000278616.4:c.461A>G	p.Lys154Arg	p.K154R	ENST00000278616	NM_000051.3	154	aAa/aGa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118359477	118359477	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	46	319	0	ENST00000534358.1:c.4479+2T>C		p.X1493_splice	ENST00000534358	NM_005933.3	1493																																																																															
KMT2D	0	MSKCC	GRCh37	12	49420783	49420783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	84	502	1	ENST00000301067.7:c.14966G>A	p.Arg4989Gln	p.R4989Q	ENST00000301067	NM_003482.3	4989	cGg/cAg																																																																														
POLE	0	MSKCC	GRCh37	12	133208998	133208998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	69	585	0	ENST00000320574.5:c.6233G>A	p.Arg2078Gln	p.R2078Q	ENST00000320574	NM_006231.2	2078	cGg/cAg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913624	32913624	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	14	369	0	ENST00000380152.3:c.5132T>C	p.Val1711Ala	p.V1711A	ENST00000380152		1711	gTa/gCa																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873625	35873625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	41	263	0	ENST00000216797.5:c.226T>C	p.Ser76Pro	p.S76P	ENST00000216797	NM_020529.2	76	Tcg/Ccg																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987102	36987102	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	62	664	0	ENST00000354822.5:c.587T>C	p.Val196Ala	p.V196A	ENST00000354822	NM_001079668.2	196	gTg/gCg																																																																														
DICER1	0	MSKCC	GRCh37	14	95562710	95562710	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	46	436	0	ENST00000343455.3:c.4547A>G	p.Lys1516Arg	p.K1516R	ENST00000343455	NM_177438.2	1516	aAa/aGa																																																																														
AKT1	0	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	91	741	0	ENST00000349310.3:c.238T>A	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Agg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43720290	43720290	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	56	531	0	ENST00000382044.4:c.3752T>C	p.Val1251Ala	p.V1251A	ENST00000382044	NM_001141980.1	1251	gTa/gCa																																																																														
IGF1R	0	MSKCC	GRCh37	15	99473516	99473516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	26	265	0	ENST00000268035.6:c.2938T>C	p.Tyr980His	p.Y980H	ENST00000268035	NM_000875.3	980	Tac/Cac																																																																														
TSC2	0	MSKCC	GRCh37	16	2129647	2129647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	84	641	4	ENST00000219476.3:c.3374G>A	p.Arg1125Gln	p.R1125Q	ENST00000219476	NM_000548.3	1125	cGg/cAg																																																																														
TRAF7	0	MSKCC	GRCh37	16	2222333	2222333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	69	661	0	ENST00000326181.6:c.617A>G	p.Asp206Gly	p.D206G	ENST00000326181	NM_032271.2	206	gAc/gGc																																																																														
NF1	0	MSKCC	GRCh37	17	29527615	29527615	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	27	325	0	ENST00000358273.4:c.1062+2T>C		p.X354_splice	ENST00000358273	NM_001042492.2	354																																																																															
NF1	0	MSKCC	GRCh37	17	29670154	29670154	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	22	316	0	ENST00000358273.4:c.7189+1G>A		p.X2397_splice	ENST00000358273	NM_001042492.2	2397																																																																															
STAT3	0	MSKCC	GRCh37	17	40478163	40478163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	76	630	1	ENST00000264657.5:c.1336T>C	p.Tyr446His	p.Y446H	ENST00000264657	NM_139276.2	446	Tat/Cat																																																																														
PPM1D	0	MSKCC	GRCh37	17	58678049	58678049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	52	323	0	ENST00000305921.3:c.274T>C	p.Cys92Arg	p.C92R	ENST00000305921	NM_003620.3	92	Tgc/Cgc																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732932	74732932	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	45	353	0	ENST00000359995.5:c.311del	p.Gly104AspfsTer128	p.G104Dfs*128	ENST00000359995	NM_001195427.1	104	gGa/ga																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226299	2226299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	114	736	1	ENST00000398665.3:c.3779C>T	p.Pro1260Leu	p.P1260L	ENST00000398665	NM_032482.2	1260	cCg/cTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15298069	15298069	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	99	765	0	ENST00000263388.2:c.1687A>G	p.Ile563Val	p.I563V	ENST00000263388	NM_000435.2	563	Atc/Gtc																																																																														
AKT2	0	MSKCC	GRCh37	19	40741180	40741180	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	96	619	0	ENST00000392038.2:c.1253T>C	p.Val418Ala	p.V418A	ENST00000392038	NM_001626.4	418	gTc/gCc																																																																														
AKT2	0	MSKCC	GRCh37	19	40741244	40741244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	71	596	0	ENST00000392038.2:c.1189C>G	p.Pro397Ala	p.P397A	ENST00000392038	NM_001626.4	397	Ccc/Gcc																																																																														
POLD1	0	MSKCC	GRCh37	19	50919024	50919024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	111	630	0	ENST00000440232.2:c.2761C>T	p.Arg921Cys	p.R921C	ENST00000440232	NM_002691.3	921	Cgc/Tgc																																																																														
MSH2	0	MSKCC	GRCh37	2	47635517	47635556	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATGTACTTTTTTTTTTTTTAAGGAGCAAAGAATCTGCAG	AATGTACTTTTTTTTTTTTTAAGGAGCAAAGAATCTGCAG	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	41	218	0	ENST00000233146.2:c.212-22_229del		p.X71_splice	ENST00000233146	NM_000251.2	71																																																																															
ERBB4	0	MSKCC	GRCh37	2	213403197	213403197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	85	455	0	ENST00000342788.4:c.58G>C	p.Val20Leu	p.V20L	ENST00000342788	NM_005235.2	20	Gtc/Ctc																																																																														
TOP1	0	MSKCC	GRCh37	20	39742743	39742743	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	77	493	2	ENST00000361337.2:c.1586T>A	p.Phe529Tyr	p.F529Y	ENST00000361337	NM_003286.2	529	tTc/tAc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164716	36164716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	78	678	2	ENST00000300305.3:c.1159G>A	p.Gly387Ser	p.G387S	ENST00000300305		387	Ggc/Agc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091746	29091746	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	18	258	1	ENST00000328354.6:c.1211A>T	p.Tyr404Phe	p.Y404F	ENST00000328354	NM_007194.3	404	tAt/tTt																																																																														
CHEK2	0	MSKCC	GRCh37	22	29115404	29115404	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs113947614		P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	51	466	0	ENST00000328354.6:c.662T>C	p.Ile221Thr	p.I221T	ENST00000328354	NM_007194.3	221	aTc/aCc																																																																														
ATR	0	MSKCC	GRCh37	3	142277574	142277574	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	36	462	0	ENST00000350721.4:c.1777del	p.Met593CysfsTer16	p.M593Cfs*16	ENST00000350721	NM_001184.3	593	Atg/tg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1932462	1932462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	63	696	0	ENST00000382891.5:c.1520C>T	p.Ala507Val	p.A507V	ENST00000382891	NM_133335.3	507	gCc/gTc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143181707	143181707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	36	348	0	ENST00000262992.4:c.626T>C	p.Val209Ala	p.V209A	ENST00000262992	NM_001101669.1	209	gTa/gCa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153268195	153268195	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	50	294	0	ENST00000281708.4:c.613A>G	p.Thr205Ala	p.T205A	ENST00000281708	NM_033632.3	205	Aca/Gca																																																																														
FAT1	0	MSKCC	GRCh37	4	187541693	187541693	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	54	333	0	ENST00000441802.2:c.6047T>C	p.Ile2016Thr	p.I2016T	ENST00000441802	NM_005245.3	2016	aTc/aCc																																																																														
TERT	0	MSKCC	GRCh37	5	1253911	1253911	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	46	547	0	ENST00000310581.5:c.3331A>T	p.Thr1111Ser	p.T1111S	ENST00000310581	NM_198253.2	1111	Acg/Tcg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31401628	31401628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	44	484	0	ENST00000344624.3:c.4036C>G	p.Arg1346Gly	p.R1346G	ENST00000344624		1346	Cgg/Ggg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31423005	31423005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	59	554	0	ENST00000344624.3:c.3308T>C	p.Val1103Ala	p.V1103A	ENST00000344624		1103	gTt/gCt																																																																														
APC	0	MSKCC	GRCh37	5	112179144	112179144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	27	256	0	ENST00000257430.4:c.7853A>G	p.Asn2618Ser	p.N2618S	ENST00000257430	NM_000038.5	2618	aAt/aGt																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032066	26032066	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	44	358	0	ENST00000244661.2:c.223A>G	p.Ile75Val	p.I75V	ENST00000244661	NM_003537.3	75	Atc/Gtc																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250719	26250719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	48	439	0	ENST00000446824.2:c.115C>T	p.Pro39Ser	p.P39S	ENST00000446824	NM_021018.2	39	Ccc/Tcc																																																																														
ROS1	0	MSKCC	GRCh37	6	117707000	117707000	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	49	538	0	ENST00000368508.3:c.2150T>C	p.Leu717Pro	p.L717P	ENST00000368508	NM_002944.2	717	cTc/cCc																																																																														
KMT2C	0	MSKCC	GRCh37	7	152012392	152012392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	34	305	2	ENST00000262189.6:c.421G>A	p.Glu141Lys	p.E141K	ENST00000262189	NM_170606.2	141	Gaa/Aaa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38194827	38194828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	68	446	0	ENST00000317025.8:c.905dup	p.Arg303LysfsTer12	p.R303Kfs*12	ENST00000317025	NM_023034.1	302	aca/acCa																																																																														
FGFR1	0	MSKCC	GRCh37	8	38275465	38275465	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	103	638	1	ENST00000425967.3:c.1568T>C	p.Val523Ala	p.V523A	ENST00000425967	NM_001174067.1	523	gTg/gCg																																																																														
PPP6C	0	MSKCC	GRCh37	9	127912200	127912200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	19	208	0	ENST00000373547.4:c.670T>C	p.Phe224Leu	p.F224L	ENST00000373547	NM_002721.4	224	Ttt/Ctt																																																																														
GATA1	0	MSKCC	GRCh37	X	48650389	48650389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	77	336	1	ENST00000376670.3:c.359C>T	p.Ala120Val	p.A120V	ENST00000376670	NM_002049.3	120	gCc/gTc																																																																														
AMER1	0	MSKCC	GRCh37	X	63411698	63411698	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	64	364	0	ENST00000330258.3:c.1469T>C	p.Val490Ala	p.V490A	ENST00000330258	NM_152424.3	490	gTc/gCc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	80	287	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																														
MTOR	0	MSKCC	GRCh37	1	11188134	11188134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	215	433	2	ENST00000361445.4:c.5960G>T	p.Arg1987Leu	p.R1987L	ENST00000361445	NM_004958.3	1987	cGg/cTg																																																																														
PGR	0	MSKCC	GRCh37	11	100922197	100922197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	157	434	0	ENST00000325455.5:c.2315G>T	p.Ser772Ile	p.S772I	ENST00000325455	NM_001202474.3	772	aGt/aTt																																																																														
MALT1	0	MSKCC	GRCh37	18	56377305	56377305	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	115	254	0	ENST00000348428.3:c.925+1G>T		p.X309_splice	ENST00000348428	NM_006785.3	309																																																																															
BRD4	0	MSKCC	GRCh37	19	15350207	15350207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	425	561	0	ENST00000263377.2:c.3572A>T	p.Lys1191Ile	p.K1191I	ENST00000263377	NM_058243.2	1191	aAa/aTa																																																																														
SOX2	0	MSKCC	GRCh37	3	181430269	181430269	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	203	463	0	ENST00000325404.1:c.121G>C	p.Val41Leu	p.V41L	ENST00000325404	NM_003106.3	41	Gtc/Ctc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356139	66356139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	147	439	0	ENST00000273854.3:c.1358G>T	p.Gly453Val	p.G453V	ENST00000273854	NM_004439.5	453	gGa/gTa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467590	66467590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	99	316	0	ENST00000273854.3:c.679C>A	p.Arg227Ser	p.R227S	ENST00000273854	NM_004439.5	227	Cgt/Agt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258956	153258956	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	97	234	1	ENST00000281708.4:c.859G>A	p.Glu287Lys	p.E287K	ENST00000281708	NM_033632.3	287	Gag/Aag																																																																														
SDHA	0	MSKCC	GRCh37	5	228366	228366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	82	323	0	ENST00000264932.6:c.688G>T	p.Glu230Ter	p.E230*	ENST00000264932	NM_004168.2	230	Gag/Tag																																																																														
TERT	0	MSKCC	GRCh37	5	1294938	1294938	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	22	123	0	ENST00000310581.5:c.167T>A	p.Val56Glu	p.V56E	ENST00000310581	NM_198253.2	56	gTg/gAg																																																																														
STK19	0	MSKCC	GRCh37	6	31940483	31940483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	323	592	2	ENST00000375331.2:c.516G>T	p.Arg172Ser	p.R172S	ENST00000375331	NM_004197.1	172	agG/agT																																																																														
TP53	0	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	193	820	0	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																														
AXIN1	0	MSKCC	GRCh37	16	396929	396929	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1411	145	867	0	ENST00000262320.3:c.97G>C	p.Val33Leu	p.V33L	ENST00000262320	NM_003502.3	33	Gtg/Ctg																																																																														
TOP1	0	MSKCC	GRCh37	20	39750387	39750388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTAA			P-0027448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	44	522	0	ENST00000361337.2:c.2003_2006dup	p.Lys669AsnfsTer2	p.K669Nfs*2	ENST00000361337	NM_003286.2	668	gct/gCTAAct																																																																														
JAK2	0	MSKCC	GRCh37	9	5054648	5054648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	95	424	1	ENST00000381652.3:c.700C>T	p.Arg234Cys	p.R234C	ENST00000381652	NM_004972.3	234	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0027451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	269	529	0				ENST00000310581	NM_198253.2																																																																																
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	234	297	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0027501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	342	542	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	80	193	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
BRD4	0	MSKCC	GRCh37	19	15366308	15366308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	216	332	0	ENST00000263377.2:c.1847G>A	p.Arg616Gln	p.R616Q	ENST00000263377	NM_058243.2	616	cGg/cAg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468282	50468282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	279	429	0	ENST00000331340.3:c.1517C>T	p.Ser506Leu	p.S506L	ENST00000331340	NM_006060.4	506	tCg/tTg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209585	98209585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	157	316	0	ENST00000331920.6:c.3953C>T	p.Pro1318Leu	p.P1318L	ENST00000331920	NM_000264.3	1318	cCg/cTg																																																																														
WT1	0	MSKCC	GRCh37	11	32456509	32456509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	121	122	0	ENST00000332351.3:c.383C>T	p.Pro128Leu	p.P128L	ENST00000332351	NM_024426.4	128	cCg/cTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211057	36211057	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	377	688	1	ENST00000222270.7:c.808G>T	p.Glu270Ter	p.E270*	ENST00000222270	NM_014727.1	270	Gag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112173581	112173581	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	105	223	0	ENST00000257430.4:c.2291del	p.Leu764Ter	p.L764*	ENST00000257430	NM_000038.5	764	Tta/ta																																																																														
AMER1	0	MSKCC	GRCh37	X	63412072	63412072	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	308	276	1	ENST00000330258.3:c.1095C>A	p.Tyr365Ter	p.Y365*	ENST00000330258	NM_152424.3	365	taC/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	121	367	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862749	9862749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150316865		P-0027508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	211	495	2	ENST00000330684.3:c.2554G>A	p.Val852Met	p.V852M	ENST00000330684	NM_001134407.1	852	Gtg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7578232	7578234	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	AAA	AAA	-			P-0027508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	240	569	0	ENST00000269305.4:c.615_617del	p.Tyr205_Leu206delinsTer	p.Y205_L206delins*	ENST00000269305	NM_001126112.2	205	taTTTg/tag																																																																														
IKBKE	0	MSKCC	GRCh37	1	206649598	206649598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	114	536	0	ENST00000367120.3:c.433G>A	p.Val145Ile	p.V145I	ENST00000367120	NM_014002.3	145	Gta/Ata																																																																														
RAD50	0	MSKCC	GRCh37	5	131939682	131939682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	114	429	0	ENST00000265335.6:c.2468G>T	p.Arg823Leu	p.R823L	ENST00000265335		823	cGa/cTa																																																																														
BCOR	0	MSKCC	GRCh37	X	39923140	39923140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	110	557	0	ENST00000378444.4:c.3568G>A	p.Glu1190Lys	p.E1190K	ENST00000378444	NM_001123385.1	1190	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0019082-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			944	344	540	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019082-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			699	67	448	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019082-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			578	363	663	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32187483	32187483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019082-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1567	123	705	4	ENST00000375023.3:c.1396G>A	p.Gly466Ser	p.G466S	ENST00000375023	NM_004557.3	466	Ggc/Agc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019458-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	262	432	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0019458-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	175	365	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56189412	56189412	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019458-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			211	515	518	0	ENST00000399503.3:c.4444C>T	p.Arg1482Ter	p.R1482*	ENST00000399503	NM_005921.1	1482	Cga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019458-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	271	368	1	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019458-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	168	459	0	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	524	673	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	378	420	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	356	488	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469984	25469984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	171	583	1	ENST00000264709.3:c.1058C>T	p.Ala353Val	p.A353V	ENST00000264709	NM_175629.2	353	gCg/gTg																																																																														
JAK1	0	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	304	320	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	129	255	3	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15278069	15278069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	181	562	0	ENST00000263388.2:c.5353C>T	p.Arg1785Cys	p.R1785C	ENST00000263388	NM_000435.2	1785	Cgt/Tgt																																																																														
INHA	0	MSKCC	GRCh37	2	220439700	220439701	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	206	750	1	ENST00000243786.2:c.562_563dupCT	p.Leu189CysfsTer2	p.L189Cfs*2	ENST00000243786	NM_002191.3	185	gct/gCTct																																																																														
BRD4	0	MSKCC	GRCh37	19	15354152	15354152	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	101	508	2	ENST00000263377.2:c.2728delC	p.Gln910LysfsTer39	p.Q910Kfs*39	ENST00000263377	NM_058243.2	910	Caa/aa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	415	567	7	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	250	258	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	250	258	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	492	813	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
RXRA	0	MSKCC	GRCh37	9	137321073	137321073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	351	531	1	ENST00000481739.1:c.1030G>A	p.Ala344Thr	p.A344T	ENST00000481739	NM_002957.4	344	Gcc/Acc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	630	331	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																														
BCL10	0	MSKCC	GRCh37	1	85736511	85736511	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	339	311	10	ENST00000370580.1:c.136delA	p.Ile46TyrfsTer24	p.I46Yfs*24	ENST00000370580	NM_003921.4	46	Ata/ta																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182665109	182665109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	360	365	0	ENST00000292782.4:c.617G>A	p.Arg206Gln	p.R206Q	ENST00000292782	NM_020640.2	206	cGa/cAa																																																																														
SPEN	0	MSKCC	GRCh37	1	16260194	16260194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	353	493	0	ENST00000375759.3:c.7464del	p.Ile2489SerfsTer10	p.I2489Sfs*10	ENST00000375759	NM_015001.2	2487	Ggg/gg																																																																														
DDR2	0	MSKCC	GRCh37	1	162724605	162724605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	328	533	1	ENST00000367921.3:c.377G>A	p.Gly126Asp	p.G126D	ENST00000367921	NM_006182.2	126	gGc/gAc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71946922	71946924	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	487	713	0	ENST00000298229.2:c.2774_2776del	p.Ser925del	p.S925del	ENST00000298229	NM_001567.3	924	gCCTcc/gcc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434781	49434781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	192	748	1	ENST00000301067.7:c.6772C>T	p.Pro2258Ser	p.P2258S	ENST00000301067	NM_003482.3	2258	Cct/Tct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435979	49435979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	399	665	1	ENST00000301067.7:c.6002G>A	p.Arg2001Gln	p.R2001Q	ENST00000301067	NM_003482.3	2001	cGg/cAg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56491690	56491690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	334	419	0	ENST00000267101.3:c.2582C>A	p.Pro861His	p.P861H	ENST00000267101	NM_001982.3	861	cCt/cAt																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281194	49281194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	520	633	2	ENST00000282018.3:c.241G>A	p.Ala81Thr	p.A81T	ENST00000282018	NM_020377.2	81	Gcc/Acc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43749148	43749148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	238	634	3	ENST00000382044.4:c.1658C>T	p.Thr553Met	p.T553M	ENST00000382044	NM_001141980.1	553	aCg/aTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72833965	72833965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	454	467	0	ENST00000268489.5:c.3928G>A	p.Asp1310Asn	p.D1310N	ENST00000268489	NM_006885.3	1310	Gat/Aat																																																																														
NCOR1	0	MSKCC	GRCh37	17	16075132	16075134	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	298	366	0	ENST00000268712.3:c.418_420del	p.Ser140del	p.S140del	ENST00000268712	NM_006311.3	140	TCT/-																																																																														
DOT1L	0	MSKCC	GRCh37	19	2213612	2213612	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	483	697	0	ENST00000398665.3:c.1632G>C	p.Arg544Ser	p.R544S	ENST00000398665	NM_032482.2	544	agG/agC																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600417	10600417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	529	713	3	ENST00000171111.5:c.1438G>A	p.Gly480Arg	p.G480R	ENST00000171111	NM_203500.1	480	Ggg/Agg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36215588	36215588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	554	771	1	ENST00000222270.7:c.3385C>A	p.Leu1129Met	p.L1129M	ENST00000222270	NM_014727.1	1129	Ctg/Atg																																																																														
POLD1	0	MSKCC	GRCh37	19	50912784	50912784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	203	651	2	ENST00000440232.2:c.2015C>T	p.Ala672Val	p.A672V	ENST00000440232	NM_002691.3	672	gCc/gTc																																																																														
MSH2	0	MSKCC	GRCh37	2	47690264	47690264	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	446	498	0	ENST00000233146.2:c.1481C>G	p.Ser494Ter	p.S494*	ENST00000233146	NM_000251.2	494	tCa/tGa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280061	66280061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	295	345	0	ENST00000273854.3:c.1628G>C	p.Arg543Pro	p.R543P	ENST00000273854	NM_004439.5	543	cGt/cCt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31410948	31410948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	183	663	2	ENST00000344624.3:c.3572C>T	p.Ala1191Val	p.A1191V	ENST00000344624		1191	gCg/gTg																																																																														
PMS2	0	MSKCC	GRCh37	7	6042169	6042169	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35629870		P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	299	481	2	ENST00000265849.7:c.452G>A	p.Arg151His	p.R151H	ENST00000265849	NM_000535.5	151	cGc/cAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39932028	39932029	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0027238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	415	351	0	ENST00000378444.4:c.2570_2571del	p.Glu857GlyfsTer7	p.E857Gfs*7	ENST00000378444	NM_001123385.1	857	gAG/g																																																																														
TP53	0	MSKCC	GRCh37	17	7578259	7578269	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCGGATAAG	ACTCGGATAAG	-			P-0027239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	287	541	0	ENST00000269305.4:c.580_590del	p.Leu194GlyfsTer11	p.L194Gfs*11	ENST00000269305	NM_001126112.2	194	CTTATCCGAGTg/g																																																																														
DOT1L	0	MSKCC	GRCh37	19	2207630	2207630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	54	704	0	ENST00000398665.3:c.914G>A	p.Trp305Ter	p.W305*	ENST00000398665	NM_032482.2	305	tGg/tAg																																																																														
WWTR1	0	MSKCC	GRCh37	3	149374732	149374732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	145	489	0	ENST00000360632.3:c.362C>T	p.Thr121Ile	p.T121I	ENST00000360632	NM_015472.4	121	aCc/aTc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149503846	149503846	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	164	607	0	ENST00000261799.4:c.1990G>C	p.Val664Leu	p.V664L	ENST00000261799	NM_002609.3	664	Gtg/Ctg																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197414	26197431	+	inframe_deletion	In_Frame_Del	DEL	GCCAGCTGCTTGCGTGGC	GCCAGCTGCTTGCGTGGC	-			P-0027239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	126	283	0	ENST00000356476.2:c.48_65del	p.Pro17_Ala22del	p.P17_A22del	ENST00000356476		16	gcGCCACGCAAGCAGCTGGCc/gcc																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	351	642	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	124	583	2	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																														
SUFU	0	MSKCC	GRCh37	10	104263941	104263941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	53	89	1	ENST00000369902.3:c.32G>A	p.Gly11Asp	p.G11D	ENST00000369902	NM_016169.3	11	gGc/gAc																																																																														
GNA11	0	MSKCC	GRCh37	19	3115048	3115048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	86	751	1	ENST00000078429.4:c.583G>A	p.Asp195Asn	p.D195N	ENST00000078429	NM_002067.2	195	Gac/Aac																																																																														
NEGR1	0	MSKCC	GRCh37	1	72748150	72748150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	243	447	3	ENST00000357731.5:c.28G>A	p.Ala10Thr	p.A10T	ENST00000357731	NM_173808.2	10	Gct/Act																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114799886	114799886	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0027240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	344	497	0	ENST00000543371.1:c.552+1G>A		p.X184_splice	ENST00000543371	NM_001198531.1	184																																																																															
ERBB4	0	MSKCC	GRCh37	2	212251753	212251753	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	56	304	0	ENST00000342788.4:c.3306T>G	p.Phe1102Leu	p.F1102L	ENST00000342788	NM_005235.2	1102	ttT/ttG																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023726	31023732	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGTCC	GCGGTCC	-			P-0027240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	299	625	0	ENST00000375687.4:c.3213_3219del	p.Val1072LysfsTer35	p.V1072Kfs*35	ENST00000375687	NM_015338.5	1071	GCGGTCCgc/gc																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186504347	186504347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	152	306	0	ENST00000323963.5:c.684C>A	p.Phe228Leu	p.F228L	ENST00000323963		228	ttC/ttA																																																																														
TET2	0	MSKCC	GRCh37	4	106155579	106155580	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	244	449	0	ENST00000380013.4:c.483dup	p.Asp162ArgfsTer9	p.D162Rfs*9	ENST00000380013	NM_001127208.2	160	-/A																																																																														
TRAF2	0	MSKCC	GRCh37	9	139793346	139793347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	76	569	0	ENST00000247668.2:c.156dup	p.Tyr53ValfsTer27	p.Y53Vfs*27	ENST00000247668	NM_021138.3	52	cgg/cGgg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118390467	118390467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	51	524	0	ENST00000534358.1:c.11281T>G	p.Leu3761Val	p.L3761V	ENST00000534358	NM_005933.3	3761	Ttg/Gtg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343639	118343639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	129	453	0	ENST00000534358.1:c.1765A>G	p.Thr589Ala	p.T589A	ENST00000534358	NM_005933.3	589	Aca/Gca																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	336	595	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
RB1	0	MSKCC	GRCh37	13	48954347	48954347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201458896		P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	150	485	0	ENST00000267163.4:c.1468G>A	p.Ala490Thr	p.A490T	ENST00000267163	NM_000321.2	490	Gct/Act																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678623	88678623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	95	372	0	ENST00000360948.2:c.913C>A	p.Pro305Thr	p.P305T	ENST00000360948	NM_001012338.2	305	Cca/Aca																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245146	41245146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	216	688	0	ENST00000357654.3:c.2402G>T	p.Cys801Phe	p.C801F	ENST00000357654	NM_007294.3	801	tGt/tTt																																																																														
STK11	0	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	414	687	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600365	10600365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	390	744	0	ENST00000171111.5:c.1490G>T	p.Trp497Leu	p.W497L	ENST00000171111	NM_203500.1	497	tGg/tTg																																																																														
TP63	0	MSKCC	GRCh37	3	189584488	189584488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	115	453	0	ENST00000264731.3:c.784A>G	p.Ser262Gly	p.S262G	ENST00000264731	NM_003722.4	262	Agt/Ggt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66286235	66286235	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	106	552	0	ENST00000273854.3:c.1451G>T	p.Ser484Ile	p.S484I	ENST00000273854	NM_004439.5	484	aGc/aTc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111429	56111429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	67	293	0	ENST00000399503.3:c.29C>G	p.Ser10Trp	p.S10W	ENST00000399503	NM_005921.1	10	tCg/tGg																																																																														
LATS1	0	MSKCC	GRCh37	6	149997696	149997696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	108	386	0	ENST00000253339.5:c.2771G>T	p.Arg924Leu	p.R924L	ENST00000253339		924	cGa/cTa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8449760	8449760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	157	573	1	ENST00000356435.5:c.3953C>A	p.Pro1318His	p.P1318H	ENST00000356435		1318	cCt/cAt																																																																														
RBM10	0	MSKCC	GRCh37	X	47041259	47041259	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	202	375	0	ENST00000329236.7:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000329236	NM_001204466.1	485	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	65	365	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																														
FLT4	0	MSKCC	GRCh37	5	180051053	180051053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	53	452	0	ENST00000261937.6:c.1430G>A	p.Arg477Gln	p.R477Q	ENST00000261937	NM_182925.4	477	cGg/cAg																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	86	357	2	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
LATS2	0	MSKCC	GRCh37	13	21562850	21562850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	49	635	2	ENST00000382592.4:c.1069G>A	p.Val357Met	p.V357M	ENST00000382592	NM_014572.2	357	Gtg/Atg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132438	11132438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	133	542	1	ENST00000344626.4:c.2654G>A	p.Arg885His	p.R885H	ENST00000344626	NM_003072.3	885	cGc/cAc																																																																														
CARD11	0	MSKCC	GRCh37	7	2968322	2968323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	78	480	2	ENST00000396946.4:c.1663dupC	p.Arg555ProfsTer38	p.R555Pfs*38	ENST00000396946	NM_032415.4	555	cgg/cCgg																																																																														
CTCF	0	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	125	430	1	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	32	455	1	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41277275	41277275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	75	309	0	ENST00000349496.5:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000349496	NM_001904.3	582	Cgg/Tgg																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39644789	39644789	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	30	299	0	ENST00000262039.4:c.2522del	p.Lys841ArgfsTer8	p.K841Rfs*8	ENST00000262039	NM_002647.2	840	Aaa/aa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954272	32954273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs886038189		P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	71	362	2	ENST00000380152.3:c.9253dup	p.Thr3085AsnfsTer26	p.T3085Nfs*26	ENST00000380152		3082	-/A																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	116	526	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81941311	81941311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	99	536	0	ENST00000359376.3:c.1489G>A	p.Ala497Thr	p.A497T	ENST00000359376	NM_002661.3	497	Gcc/Acc																																																																														
B2M	0	MSKCC	GRCh37	15	45003813	45003813	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	114	315	0	ENST00000558401.1:c.67+2T>C		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
TSC1	0	MSKCC	GRCh37	9	135785963	135785964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	98	516	0	ENST00000298552.3:c.1257dupC	p.Arg420GlnfsTer22	p.R420Qfs*22	ENST00000298552	NM_001162426.1	419	-/C																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	98	325	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
FANCC	2176	MSKCC	GRCh37	9	97873817	97873817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	300	533	5	ENST00000289081.3:c.1257del	p.Thr420ArgfsTer27	p.T420Rfs*27	ENST00000289081	NM_000136.2	419	ccC/cc																																																																														
MED12	0	MSKCC	GRCh37	X	70349689	70349689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	104	412	1	ENST00000374080.3:c.3851G>A	p.Arg1284His	p.R1284H	ENST00000374080		1284	cGc/cAc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	206	565	5	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	46	407	0	ENST00000318789.4:c.1240delC	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg																																																																														
MSH6	0	MSKCC	GRCh37	2	48028225	48028225	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	21	327	0	ENST00000234420.5:c.3103C>T	p.Arg1035Ter	p.R1035*	ENST00000234420	NM_000179.2	1035	Cga/Tga																																																																														
IRF4	0	MSKCC	GRCh37	6	401637	401637	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	89	441	0	ENST00000380956.4:c.963delC	p.Asp322ThrfsTer62	p.D322Tfs*62	ENST00000380956	NM_001195286.1	320	gCc/gc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120037	70120037	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	10	62	0	ENST00000245479.2:c.1039C>T	p.Gln347Ter	p.Q347*	ENST00000245479	NM_000346.3	347	Cag/Tag																																																																														
SOX9	0	MSKCC	GRCh37	17	70119909	70119910	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	90	485	0	ENST00000245479.2:c.916dup	p.Val306GlyfsTer272	p.V306Gfs*272	ENST00000245479	NM_000346.3	304	ccg/ccGg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527808	157527808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	66	338	0	ENST00000346085.5:c.5533C>T	p.Arg1845Cys	p.R1845C	ENST00000346085	NM_020732.3	1845	Cgc/Tgc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139393401	139393401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	351	609	0	ENST00000277541.6:c.6130G>A	p.Ala2044Thr	p.A2044T	ENST00000277541	NM_017617.3	2044	Gca/Aca																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14626865	14626865	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	142	514	0	ENST00000254322.2:c.910del	p.Leu304SerfsTer17	p.L304Sfs*17	ENST00000254322	NM_006145.1	304	Ctc/tc																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366987	40366987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	96	573	0	ENST00000397332.2:c.210del	p.Thr71ArgfsTer69	p.T71Rfs*69	ENST00000397332	NM_001033082.2	70	ccC/cc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443617	49443617	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	126	547	0	ENST00000301067.7:c.3754C>T	p.Arg1252Ter	p.R1252*	ENST00000301067	NM_003482.3	1252	Cga/Tga																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	123	497	0	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021277	31021277	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	120	407	2	ENST00000375687.4:c.1281del	p.Lys427AsnfsTer35	p.K427Nfs*35	ENST00000375687	NM_015338.5	426	Aaa/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434005	49434005	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	126	611	1	ENST00000301067.7:c.7548del	p.Asn2517IlefsTer26	p.N2517Ifs*26	ENST00000301067	NM_003482.3	2516	ccC/cc																																																																														
TAP1	0	MSKCC	GRCh37	6	32816451	32816451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	95	602	2	ENST00000354258.4:c.1724G>A	p.Arg575His	p.R575H	ENST00000354258	NM_000593.5	575	cGc/cAc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9784996	9784996	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	21	350	0	ENST00000377346.4:c.2997+2T>C		p.X999_splice	ENST00000377346	NM_005026.3	999																																																																															
MUTYH	0	MSKCC	GRCh37	1	45797196	45797196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	38	598	0	ENST00000372115.3:c.1177G>A	p.Val393Met	p.V393M	ENST00000372115	NM_001048171.1	393	Gtg/Atg																																																																														
VTCN1	0	MSKCC	GRCh37	1	117690383	117690383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	126	431	0	ENST00000369458.3:c.746G>T	p.Ser249Ile	p.S249I	ENST00000369458	NM_024626.3	249	aGt/aTt																																																																														
SHOC2	0	MSKCC	GRCh37	10	112760224	112760224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	38	457	0	ENST00000369452.4:c.893C>T	p.Ala298Val	p.A298V	ENST00000369452	NM_007373.3	298	gCa/gTa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375506	118375507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	20	247	0	ENST00000534358.1:c.8904dup	p.Ser2969IlefsTer6	p.S2969Ifs*6	ENST00000534358	NM_005933.3	2967	gaa/gAaa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972530	32972530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	104	427	0	ENST00000380152.3:c.9880G>T	p.Ala3294Ser	p.A3294S	ENST00000380152		3294	Gca/Tca																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972852	32972852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	85	303	0	ENST00000380152.3:c.10202C>T	p.Thr3401Met	p.T3401M	ENST00000380152		3401	aCg/aTg																																																																														
AKT1	0	MSKCC	GRCh37	14	105243026	105243026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	162	626	1	ENST00000349310.3:c.257G>A	p.Arg86His	p.R86H	ENST00000349310	NM_001014432.1	86	cGc/cAc																																																																														
B2M	0	MSKCC	GRCh37	15	45007777	45007778	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	25	371	0	ENST00000558401.1:c.227dup	p.Ser77GlnfsTer13	p.S77Qfs*13	ENST00000558401	NM_004048.2	75	tct/tcTt																																																																														
NTHL1	0	MSKCC	GRCh37	16	2094717	2094717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	112	605	2	ENST00000219066.1:c.463C>T	p.Arg155Trp	p.R155W	ENST00000219066	NM_002528.5	155	Cgg/Tgg																																																																														
SLX4	0	MSKCC	GRCh37	16	3640073	3640073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	49	696	0	ENST00000294008.3:c.3566G>A	p.Cys1189Tyr	p.C1189Y	ENST00000294008	NM_032444.2	1189	tGt/tAt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3808031	3808031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	63	318	0	ENST00000262367.5:c.3388A>G	p.Lys1130Glu	p.K1130E	ENST00000262367	NM_004380.2	1130	Aag/Gag																																																																														
EZH1	0	MSKCC	GRCh37	17	40858038	40858038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	159	437	0	ENST00000428826.2:c.1826G>A	p.Arg609His	p.R609H	ENST00000428826		609	cGt/cAt																																																																														
RNF43	0	MSKCC	GRCh37	17	56438222	56438223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	195	491	0	ENST00000407977.2:c.770dup	p.Glu258Ter	p.E258*	ENST00000407977		257	ggt/ggGt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63553975	63553976	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	249	409	0	ENST00000307078.5:c.763_764del	p.Leu255GlufsTer13	p.L255Efs*13	ENST00000307078	NM_004655.3	255	CTg/g																																																																														
DNMT1	0	MSKCC	GRCh37	19	10250767	10250767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	167	622	1	ENST00000340748.4:c.3713G>A	p.Arg1238His	p.R1238H	ENST00000340748		1238	cGc/cAc																																																																														
BRD4	0	MSKCC	GRCh37	19	15355347	15355347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	20	369	0	ENST00000263377.2:c.2276del	p.Pro759ArgfsTer35	p.P759Rfs*35	ENST00000263377	NM_058243.2	759	cCg/cg																																																																														
UPF1	0	MSKCC	GRCh37	19	18965716	18965716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	157	677	0	ENST00000262803.5:c.1294del	p.Val432TrpfsTer22	p.V432Wfs*22	ENST00000262803	NM_002911.3	432	Gtg/tg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212545	36212545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	69	658	1	ENST00000222270.7:c.2296C>A	p.Pro766Thr	p.P766T	ENST00000222270	NM_014727.1	766	Cca/Aca																																																																														
MYCN	0	MSKCC	GRCh37	2	16082398	16082398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	51	673	0	ENST00000281043.3:c.212G>A	p.Ser71Asn	p.S71N	ENST00000281043	NM_005378.4	71	aGc/aAc																																																																														
MSH6	0	MSKCC	GRCh37	2	48028216	48028216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	87	341	0	ENST00000234420.5:c.3094T>C	p.Cys1032Arg	p.C1032R	ENST00000234420	NM_000179.2	1032	Tgc/Cgc																																																																														
BARD1	0	MSKCC	GRCh37	2	215610467	215610468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	90	353	0	ENST00000260947.4:c.1788dup	p.Tyr597IlefsTer3	p.Y597Ifs*3	ENST00000260947	NM_000465.2	596	-/A																																																																														
INHA	0	MSKCC	GRCh37	2	220439860	220439860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	42	599	0	ENST00000243786.2:c.713C>A	p.Ser238Tyr	p.S238Y	ENST00000243786	NM_002191.3	238	tCc/tAc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31375211	31375211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	127	592	0	ENST00000328111.2:c.608C>A	p.Pro203Gln	p.P203Q	ENST00000328111	NM_006892.3	203	cCg/cAg																																																																														
CHEK2	0	MSKCC	GRCh37	22	29130433	29130433	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	150	531	0	ENST00000328354.6:c.277del	p.Trp93GlyfsTer17	p.W93Gfs*17	ENST00000328354	NM_007194.3	93	Tgg/gg																																																																														
NF2	0	MSKCC	GRCh37	22	30069392	30069394	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	34	505	0	ENST00000338641.4:c.1264_1266del	p.Glu422del	p.E422del	ENST00000338641	NM_000268.3	419	acGGAg/acg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178919194	178919194	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	29	224	0	ENST00000263967.3:c.685del	p.Thr229LeufsTer11	p.T229Lfs*11	ENST00000263967	NM_006218.2	227	Aaa/aa																																																																														
FAT1	0	MSKCC	GRCh37	4	187509912	187509913	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	68	271	0	ENST00000441802.2:c.13600_13601del	p.Ser4534HisfsTer14	p.S4534Hfs*14	ENST00000441802	NM_005245.3	4534	AGc/c																																																																														
FAT1	0	MSKCC	GRCh37	4	187521375	187521375	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	29	364	0	ENST00000441802.2:c.11780T>C	p.Leu3927Pro	p.L3927P	ENST00000441802	NM_005245.3	3927	cTa/cCa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950066	38950066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	62	353	0	ENST00000357387.3:c.3884C>T	p.Thr1295Met	p.T1295M	ENST00000357387	NM_152756.3	1295	aCg/aTg																																																																														
RASA1	0	MSKCC	GRCh37	5	86564441	86564441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	33	456	0	ENST00000274376.6:c.173C>T	p.Ala58Val	p.A58V	ENST00000274376	NM_002890.2	58	gCt/gTt																																																																														
FYN	0	MSKCC	GRCh37	6	112015875	112015875	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	110	398	0	ENST00000368678.4:c.1066G>T	p.Gly356Ter	p.G356*	ENST00000368678		356	Gga/Tga																																																																														
LATS1	0	MSKCC	GRCh37	6	150004679	150004679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	29	357	0	ENST00000253339.5:c.1546C>T	p.His516Tyr	p.H516Y	ENST00000253339		516	Cac/Tac																																																																														
ARID1B	0	MSKCC	GRCh37	6	157470043	157470043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	22	292	0	ENST00000346085.5:c.2837C>T	p.Ala946Val	p.A946V	ENST00000346085	NM_020732.3	946	gCc/gTc																																																																														
SOX17	0	MSKCC	GRCh37	8	55371843	55371843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	53	234	0	ENST00000297316.4:c.533G>A	p.Gly178Asp	p.G178D	ENST00000297316	NM_022454.3	178	gGc/gAc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737082	145737082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	31	534	0	ENST00000428558.2:c.3484C>T	p.Arg1162Cys	p.R1162C	ENST00000428558	NM_004260.3	1162	Cgc/Tgc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402583	139402583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	148	593	3	ENST00000277541.6:c.3334G>A	p.Val1112Ile	p.V1112I	ENST00000277541	NM_017617.3	1112	Gtt/Att																																																																														
TRAF2	0	MSKCC	GRCh37	9	139818432	139818432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	39	467	0	ENST00000247668.2:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000247668	NM_021138.3	423	Cgg/Tgg																																																																														
BCOR	0	MSKCC	GRCh37	X	39921999	39921999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	106	442	0	ENST00000378444.4:c.4173G>T	p.Lys1391Asn	p.K1391N	ENST00000378444	NM_001123385.1	1391	aaG/aaT																																																																														
AR	0	MSKCC	GRCh37	X	66863148	66863148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	124	513	0	ENST00000374690.3:c.1667C>T	p.Pro556Leu	p.P556L	ENST00000374690	NM_000044.3	556	cCc/cTc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55161392	55161392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	97	417	0	ENST00000257290.5:c.3223G>A	p.Asp1075Asn	p.D1075N	ENST00000257290	NM_006206.4	1075	Gac/Aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	153	434	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	305	593	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	142	343	0	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	123	423	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	115	449	2	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	91	256	3	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	186	607	2	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	117	333	4	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	68	257	3	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857524	9857524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	89	392	1	ENST00000330684.3:c.3877G>A	p.Asp1293Asn	p.D1293N	ENST00000330684	NM_001134407.1	1293	Gat/Aat																																																																														
MPL	0	MSKCC	GRCh37	1	43814539	43814539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	131	396	0	ENST00000372470.3:c.1334G>A	p.Arg445Gln	p.R445Q	ENST00000372470	NM_005373.2	445	cGa/cAa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46256341	46256341	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	157	467	0	ENST00000371998.3:c.574del	p.Ser192AlafsTer9	p.S192Afs*9	ENST00000371998		190	cAa/ca																																																																														
PMS2	0	MSKCC	GRCh37	7	6031648	6031648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116314131		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	176	465	1	ENST00000265849.7:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000265849	NM_000535.5	315	cGa/cAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9547004	9547004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	53	235	0	ENST00000353224.5:c.1018C>T	p.Leu340Phe	p.L340F	ENST00000353224	NM_177990.2	340	Ctc/Ttc																																																																														
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	60	201	0	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	70	277	1	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5274304	5274304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	198	614	0	ENST00000357368.4:c.143del	p.Gly48ValfsTer17	p.G48Vfs*17	ENST00000357368	NM_002850.3	48	gGt/gt																																																																														
BCOR	54880	MSKCC	GRCh37	X	39933594	39933594	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	88	486	0	ENST00000378444.4:c.1005del	p.Ser336ArgfsTer42	p.S336Rfs*42	ENST00000378444	NM_001123385.1	335	ccC/cc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251949	153251949	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	177	490	0	ENST00000281708.4:c.1057delA	p.Ser353ValfsTer24	p.S353Vfs*24	ENST00000281708	NM_033632.3	353	Agt/gt																																																																														
CASP8	0	MSKCC	GRCh37	2	202151310	202151310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	147	391	0	ENST00000358485.4:c.1610C>T	p.Ser537Phe	p.S537F	ENST00000358485	NM_001080125.1	537	tCt/tTt																																																																														
ABL1	0	MSKCC	GRCh37	9	133738351	133738351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	175	497	1	ENST00000318560.5:c.751G>T	p.Gly251Cys	p.G251C	ENST00000318560	NM_005157.4	251	Ggc/Tgc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	231	777	12	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78429367	78429367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	169	403	1	ENST00000370768.2:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000370768	NM_003902.3	359	Cga/Tga																																																																														
NUF2	0	MSKCC	GRCh37	1	163317707	163317707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	102	392	0	ENST00000271452.3:c.1103A>G	p.Gln368Arg	p.Q368R	ENST00000271452	NM_145697.2	368	cAa/cGa																																																																														
YAP1	0	MSKCC	GRCh37	11	101981596	101981596	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	81	269	0	ENST00000282441.5:c.17A>C	p.Gln6Pro	p.Q6P	ENST00000282441	NM_001130145.2	6	cAg/cCg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376673	118376673	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	151	477	0	ENST00000534358.1:c.10066A>G	p.Thr3356Ala	p.T3356A	ENST00000534358	NM_005933.3	3356	Aca/Gca																																																																														
SH2B3	0	MSKCC	GRCh37	12	111884931	111884931	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	39	429	0	ENST00000341259.2:c.929T>C	p.Leu310Pro	p.L310P	ENST00000341259	NM_005475.2	310	cTg/cCg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912742	32912743	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	113	349	0	ENST00000380152.3:c.4253_4254del	p.Ile1418LysfsTer4	p.I1418Kfs*4	ENST00000380152		1417	aAT/a																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060738	38060738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	253	829	2	ENST00000250448.2:c.1251C>A	p.Phe417Leu	p.F417L	ENST00000250448	NM_004496.3	417	ttC/ttA																																																																														
CTCF	0	MSKCC	GRCh37	16	67645054	67645054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	174	548	0	ENST00000264010.4:c.319C>T	p.Pro107Ser	p.P107S	ENST00000264010	NM_006565.3	107	Ccc/Tcc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81892753	81892753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	130	362	0	ENST00000359376.3:c.464A>G	p.Gln155Arg	p.Q155R	ENST00000359376	NM_002661.3	155	cAa/cGa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89352037	89352037	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138353708		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	199	603	1	ENST00000301030.4:c.913G>A	p.Ala305Thr	p.A305T	ENST00000301030	NM_001256183.1	305	Gca/Aca																																																																														
ERBB2	0	MSKCC	GRCh37	17	37866098	37866098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	96	625	0	ENST00000269571.5:c.607C>T	p.Arg203Cys	p.R203C	ENST00000269571		203	Cgc/Tgc																																																																														
RNF43	0	MSKCC	GRCh37	17	56492764	56492764	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	206	644	0	ENST00000407977.2:c.175G>T	p.Gly59Ter	p.G59*	ENST00000407977		59	Gga/Tga																																																																														
DNMT1	0	MSKCC	GRCh37	19	10254505	10254505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	163	504	0	ENST00000340748.4:c.3005C>A	p.Pro1002His	p.P1002H	ENST00000340748		1002	cCc/cAc																																																																														
JAK3	0	MSKCC	GRCh37	19	17946749	17946749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	226	679	0	ENST00000458235.1:c.1898A>G	p.Tyr633Cys	p.Y633C	ENST00000458235	NM_000215.3	633	tAc/tGc																																																																														
ERF	0	MSKCC	GRCh37	19	42752694	42752695	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	153	628	0	ENST00000222329.4:c.1569dup	p.Pro524AlafsTer10	p.P524Afs*10	ENST00000222329	NM_006494.2	523	-/G																																																																														
SETD2	0	MSKCC	GRCh37	3	47164678	47164678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	97	282	0	ENST00000409792.3:c.1448T>C	p.Leu483Pro	p.L483P	ENST00000409792	NM_014159.6	483	cTa/cCa																																																																														
SHQ1	0	MSKCC	GRCh37	3	72799565	72799565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	89	507	0	ENST00000325599.8:c.1604C>A	p.Ser535Tyr	p.S535Y	ENST00000325599	NM_018130.2	535	tCt/tAt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89462366	89462366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	149	586	0	ENST00000336596.2:c.1838C>T	p.Ala613Val	p.A613V	ENST00000336596	NM_005233.5	613	gCc/gTc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911580	134911580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	73	503	0	ENST00000398015.3:c.2045G>A	p.Arg682His	p.R682H	ENST00000398015	NM_004441.4	682	cGc/cAc																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41748294	41748294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	63	725	3	ENST00000226382.2:c.475G>A	p.Ala159Thr	p.A159T	ENST00000226382	NM_003924.3	159	Gca/Aca																																																																														
INPP4B	0	MSKCC	GRCh37	4	143066999	143066999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	77	305	1	ENST00000262992.4:c.1714C>A	p.Pro572Thr	p.P572T	ENST00000262992	NM_001101669.1	572	Cca/Aca																																																																														
FAT1	0	MSKCC	GRCh37	4	187535408	187535408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	140	448	1	ENST00000441802.2:c.9166G>A	p.Ala3056Thr	p.A3056T	ENST00000441802	NM_005245.3	3056	Gct/Act																																																																														
E2F3	0	MSKCC	GRCh37	6	20481473	20481473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138776759		P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	45	313	0	ENST00000346618.3:c.542C>T	p.Thr181Met	p.T181M	ENST00000346618	NM_001949.4	181	aCg/aTg																																																																														
FYN	0	MSKCC	GRCh37	6	112017558	112017558	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	131	451	0	ENST00000368678.4:c.955A>G	p.Lys319Glu	p.K319E	ENST00000368678		319	Aag/Gag																																																																														
EZH2	0	MSKCC	GRCh37	7	148513817	148513817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	140	415	0	ENST00000320356.2:c.1464G>T	p.Glu488Asp	p.E488D	ENST00000320356	NM_004456.4	488	gaG/gaT																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540207	23540207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	165	477	1	ENST00000380871.4:c.196C>T	p.Arg66Cys	p.R66C	ENST00000380871	NM_006167.3	66	Cgc/Tgc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981857	70981857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	152	649	0	ENST00000276594.2:c.239C>T	p.Pro80Leu	p.P80L	ENST00000276594	NM_024504.3	80	cCg/cTg																																																																														
RAD21	0	MSKCC	GRCh37	8	117866605	117866605	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	155	482	0	ENST00000297338.2:c.1040T>A	p.Ile347Asn	p.I347N	ENST00000297338	NM_006265.2	347	aTt/aAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39923729	39923729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	205	652	0	ENST00000378444.4:c.3362C>T	p.Ala1121Val	p.A1121V	ENST00000378444	NM_001123385.1	1121	gCc/gTc																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	137	595	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15827432	15827432	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	95	448	0	ENST00000307771.7:c.548T>G	p.Phe183Cys	p.F183C	ENST00000307771	NM_005089.3	183	tTt/tGt																																																																														
VHL	0	MSKCC	GRCh37	3	10188210	10188210	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs5030830		P-0027381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	120	523	0	ENST00000256474.2:c.353T>C	p.Leu118Pro	p.L118P	ENST00000256474	NM_000551.3	118	cTc/cCc																																																																														
EZH1	0	MSKCC	GRCh37	17	40856641	40856641	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	133	484	2	ENST00000428826.2:c.1996T>A	p.Phe666Ile	p.F666I	ENST00000428826		666	Ttc/Atc																																																																														
TERT	0	MSKCC	GRCh37	5	1280386	1280386	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	137	701	0	ENST00000310581.5:c.1837A>T	p.Arg613Trp	p.R613W	ENST00000310581	NM_198253.2	613	Agg/Tgg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	144	508	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	133	637	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	110	360	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856604	111856604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	124	423	4	ENST00000341259.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000341259	NM_005475.2	219	Cgc/Tgc																																																																														
ARAF	0	MSKCC	GRCh37	X	47424206	47424206	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	57	542	0	ENST00000377045.4:c.211G>T	p.Val71Phe	p.V71F	ENST00000377045	NM_001654.4	71	Gtc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	38	613	0	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	25	526	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	25	526	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	25	526	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486292	8486292	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	24	313	0	ENST00000356435.5:c.2525A>G	p.Gln842Arg	p.Q842R	ENST00000356435		842	cAg/cGg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0027436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	153	388	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0027436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	321	857	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
SPEN	0	MSKCC	GRCh37	1	16256265	16256265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	105	612	0	ENST00000375759.3:c.3530G>A	p.Arg1177His	p.R1177H	ENST00000375759	NM_015001.2	1177	cGt/cAt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	221	540	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	218	513	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	537	625	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CASP8	0	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	73	522	0	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																																																														
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	157	368	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																														
IL7R	0	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	199	460	6	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	196	537	2	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	362	776	3	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
AKT3	0	MSKCC	GRCh37	1	243668598	243668598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	214	512	0	ENST00000263826.5:c.1393C>T	p.Arg465Trp	p.R465W	ENST00000263826	NM_005465.4	465	Cgg/Tgg																																																																														
XPO1	0	MSKCC	GRCh37	2	61729435	61729435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	69	538	2	ENST00000401558.2:c.312del	p.Lys104AsnfsTer17	p.K104Nfs*17	ENST00000401558	NM_003400.3	104	aaA/aa																																																																														
PARK2	0	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	277	502	0	ENST00000366898.1:c.1283delA	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39629562	39629562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	162	432	0	ENST00000262039.4:c.2260del	p.Thr754GlnfsTer7	p.T754Qfs*7	ENST00000262039	NM_002647.2	752	acA/ac																																																																														
EZH2	0	MSKCC	GRCh37	7	148516773	148516773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	137	293	0	ENST00000320356.2:c.914A>G	p.His305Arg	p.H305R	ENST00000320356	NM_004456.4	305	cAt/cGt																																																																														
FGF4	0	MSKCC	GRCh37	11	69589698	69589698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	89	208	1	ENST00000168712.1:c.155C>T	p.Ala52Val	p.A52V	ENST00000168712	NM_002007.2	52	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7572991	7572991	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	110	470	0	ENST00000269305.4:c.1118delA	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	373	aAg/ag																																																																														
SUFU	0	MSKCC	GRCh37	10	104263974	104263974	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	180	392	0	ENST00000369902.3:c.71delC	p.Pro24ArgfsTer72	p.P24Rfs*72	ENST00000369902	NM_016169.3	22	gCc/gc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993014	72993014	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	390	934	0	ENST00000268489.5:c.1031del	p.Asn344ThrfsTer8	p.N344Tfs*8	ENST00000268489	NM_006885.3	344	aAc/ac																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	325	790	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	361	924	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610561	10610561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	326	707	1	ENST00000171111.5:c.149G>A	p.Arg50His	p.R50H	ENST00000171111	NM_203500.1	50	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	181	797	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740376	58740376	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	200	464	0	ENST00000305921.3:c.1281G>A	p.Trp427Ter	p.W427*	ENST00000305921	NM_003620.3	427	tgG/tgA																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599970	10599970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	340	831	4	ENST00000171111.5:c.1606C>T	p.Arg536Cys	p.R536C	ENST00000171111	NM_203500.1	536	Cgc/Tgc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	266	645	6	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
SMO	0	MSKCC	GRCh37	7	128829014	128829014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	52	98	0	ENST00000249373.3:c.22C>T	p.Arg8Trp	p.R8W	ENST00000249373	NM_005631.4	8	Cgg/Tgg																																																																														
TEK	0	MSKCC	GRCh37	9	27168574	27168576	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	310	637	0	ENST00000380036.4:c.453_455del	p.Glu151del	p.E151del	ENST00000380036	NM_000459.3	149	aAAGaa/aaa																																																																														
SDHB	0	MSKCC	GRCh37	1	17350485	17350485	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	320	675	0	ENST00000375499.3:c.625C>G	p.Pro209Ala	p.P209A	ENST00000375499	NM_003000.2	209	Cct/Gct																																																																														
FH	0	MSKCC	GRCh37	1	241675283	241675283	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	182	429	0	ENST00000366560.3:c.539A>G	p.His180Arg	p.H180R	ENST00000366560	NM_000143.3	180	cAt/cGt																																																																														
TET1	0	MSKCC	GRCh37	10	70451522	70451522	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	126	718	0	ENST00000373644.4:c.6362C>G	p.Ser2121Cys	p.S2121C	ENST00000373644	NM_030625.2	2121	tCc/tGc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343529	118343529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	141	420	1	ENST00000534358.1:c.1660del	p.Gln554SerfsTer13	p.Q554Sfs*13	ENST00000534358	NM_005933.3	552	gCc/gc																																																																														
ARID2	0	MSKCC	GRCh37	12	46233172	46233172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	161	369	1	ENST00000334344.6:c.1391C>T	p.Ala464Val	p.A464V	ENST00000334344	NM_152641.2	464	gCg/gTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431961	49431962	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	89	825	0	ENST00000301067.7:c.9177_9178del	p.Asp3061GlnfsTer7	p.D3061Qfs*7	ENST00000301067	NM_003482.3	3059	acTGgg/acgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444363	49444363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	103	728	2	ENST00000301067.7:c.3008del	p.Pro1003HisfsTer14	p.P1003Hfs*14	ENST00000301067	NM_003482.3	1003	cCa/ca																																																																														
FOXO1	0	MSKCC	GRCh37	13	41240165	41240165	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	97	186	0	ENST00000379561.5:c.185C>A	p.Ser62Ter	p.S62*	ENST00000379561	NM_002015.3	62	tCg/tAg																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987219	36987219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	278	699	0	ENST00000354822.5:c.470G>A	p.Arg157His	p.R157H	ENST00000354822	NM_001079668.2	157	cGc/cAc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3828771	3828771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	260	649	1	ENST00000262367.5:c.1871G>A	p.Arg624His	p.R624H	ENST00000262367	NM_004380.2	624	cGc/cAc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533766	63533766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	247	534	1	ENST00000307078.5:c.1388G>A	p.Arg463His	p.R463H	ENST00000307078	NM_004655.3	463	cGc/cAc																																																																														
YES1	0	MSKCC	GRCh37	18	742983	742983	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	204	524	0	ENST00000314574.4:c.995T>C	p.Leu332Pro	p.L332P	ENST00000314574	NM_005433.3	332	cTt/cCt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214724	5214724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	199	629	0	ENST00000357368.4:c.4342A>G	p.Asn1448Asp	p.N1448D	ENST00000357368	NM_002850.3	1448	Aat/Gat																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18277088	18277088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	304	577	0	ENST00000222254.8:c.1535A>G	p.Glu512Gly	p.E512G	ENST00000222254	NM_005027.3	512	gAg/gGg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36209065	36209065	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	90	170	0	ENST00000222270.7:c.145del	p.Arg49AlafsTer118	p.R49Afs*118	ENST00000222270	NM_014727.1	49	Cgc/gc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212189	36212189	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	272	627	0	ENST00000222270.7:c.1940T>C	p.Leu647Pro	p.L647P	ENST00000222270	NM_014727.1	647	cTt/cCt																																																																														
MSH6	0	MSKCC	GRCh37	2	48028289	48028289	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	149	373	0	ENST00000234420.5:c.3167T>C	p.Val1056Ala	p.V1056A	ENST00000234420	NM_000179.2	1056	gTg/gCg																																																																														
IRS1	0	MSKCC	GRCh37	2	227662767	227662767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	340	709	0	ENST00000305123.5:c.688G>A	p.Val230Met	p.V230M	ENST00000305123	NM_005544.2	230	Gtg/Atg																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24159067	24159067	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	234	543	0	ENST00000263121.7:c.739T>C	p.Ser247Pro	p.S247P	ENST00000263121	NM_003073.3	247	Tcc/Ccc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713851	30713853	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	271	683	0	ENST00000359013.4:c.1255_1257del	p.Cys419del	p.C419del	ENST00000359013	NM_001024847.2	417	acCTGc/acc																																																																														
SOX2	0	MSKCC	GRCh37	3	181430228	181430228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	244	490	0	ENST00000325404.1:c.80C>T	p.Ala27Val	p.A27V	ENST00000325404	NM_003106.3	27	gCg/gTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187628581	187628581	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	346	731	1	ENST00000441802.2:c.2401C>T	p.Gln801Ter	p.Q801*	ENST00000441802	NM_005245.3	801	Cag/Tag																																																																														
DROSHA	0	MSKCC	GRCh37	5	31493328	31493328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	175	401	0	ENST00000344624.3:c.1828G>A	p.Ala610Thr	p.A610T	ENST00000344624		610	Gcc/Acc																																																																														
IL7R	0	MSKCC	GRCh37	5	35871249	35871249	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	225	541	0	ENST00000303115.3:c.471G>T	p.Lys157Asn	p.K157N	ENST00000303115	NM_002185.3	157	aaG/aaT																																																																														
APC	0	MSKCC	GRCh37	5	112151265	112151265	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	182	377	0	ENST00000257430.4:c.908G>T	p.Arg303Met	p.R303M	ENST00000257430	NM_000038.5	303	aGg/aTg																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138196093	138196093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	166	351	0	ENST00000237289.4:c.407G>A	p.Arg136His	p.R136H	ENST00000237289	NM_001270507.1	136	cGc/cAc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509879	106509879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	271	661	0	ENST00000359195.3:c.1873G>A	p.Gly625Arg	p.G625R	ENST00000359195	NM_002649.2	625	Ggg/Agg																																																																														
MET	0	MSKCC	GRCh37	7	116417506	116417506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	146	346	1	ENST00000397752.3:c.3323C>T	p.Ala1108Val	p.A1108V	ENST00000397752	NM_000245.2	1108	gCt/gTt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98231381	98231382	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	96	542	0	ENST00000331920.6:c.1901_1902del	p.His634ArgfsTer19	p.H634Rfs*19	ENST00000331920	NM_000264.3	634	cAC/c																																																																														
TSC1	0	MSKCC	GRCh37	9	135772972	135772972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	110	292	0	ENST00000298552.3:c.2651A>G	p.Tyr884Cys	p.Y884C	ENST00000298552	NM_001162426.1	884	tAt/tGt																																																																														
AR	0	MSKCC	GRCh37	X	66863121	66863122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTGCCC			P-0027438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	85	607	0	ENST00000374690.3:c.1641_1647dup	p.Ile550PhefsTer4	p.I550Ffs*4	ENST00000374690	NM_000044.3	547	gtt/gtTTTGCCCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	156	468	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	89	410	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39933047	39933047	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	39	359	2	ENST00000378444.4:c.1552G>T	p.Glu518Ter	p.E518*	ENST00000378444	NM_001123385.1	518	Gaa/Taa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259044	89259044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	108	260	0	ENST00000336596.2:c.188C>A	p.Thr63Lys	p.T63K	ENST00000336596	NM_005233.5	63	aCa/aAa																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987025	36987025	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	369	556	0	ENST00000354822.5:c.664G>T	p.Glu222Ter	p.E222*	ENST00000354822	NM_001079668.2	222	Gag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023145	27023162	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGGCGGAGCCGGCA	GCGGCGGCGGAGCCGGCA	-			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	108	123	2	ENST00000324856.7:c.261_278del	p.Ala88_Gly93del	p.A88_G93del	ENST00000324856	NM_006015.4	84	gGCGGCGGCGGAGCCGGCAgc/ggc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575193	48575193	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	97	329	0	ENST00000342988.3:c.387T>G	p.Asn129Lys	p.N129K	ENST00000342988	NM_005359.5	129	aaT/aaG																																																																														
MSH6	0	MSKCC	GRCh37	2	48028024	48028029	+	inframe_deletion	In_Frame_Del	DEL	GTCTAT	GTCTAT	-			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	124	321	0	ENST00000234420.5:c.2902_2907del	p.Val968_Tyr969del	p.V968_Y969del	ENST00000234420	NM_000179.2	968	GTCTAT/-																																																																														
TERT	0	MSKCC	GRCh37	5	1295045	1295045	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	46	198	0	ENST00000310581.5:c.60G>T	p.Glu20Asp	p.E20D	ENST00000310581	NM_198253.2	20	gaG/gaT																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858188	27858188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	104	496	1	ENST00000359303.2:c.383C>A	p.Ala128Glu	p.A128E	ENST00000359303	NM_003535.2	128	gCg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	369	885	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	87	354	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ETV6	0	MSKCC	GRCh37	12	12038935	12038935	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	122	436	0	ENST00000396373.4:c.1228G>T	p.Glu410Ter	p.E410*	ENST00000396373	NM_001987.4	410	Gag/Tag																																																																														
ATRX	0	MSKCC	GRCh37	X	76875944	76875944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	356	621	0	ENST00000373344.5:c.5191G>A	p.Val1731Ile	p.V1731I	ENST00000373344	NM_000489.3	1731	Gtt/Att																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	257	606	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	307	381	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
ATM	0	MSKCC	GRCh37	11	108213985	108213985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	123	310	0	ENST00000278616.4:c.8305T>C	p.Trp2769Arg	p.W2769R	ENST00000278616	NM_000051.3	2769	Tgg/Cgg																																																																														
APC	0	MSKCC	GRCh37	5	112173283	112173284	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0027487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	83	183	0	ENST00000257430.4:c.1993_1994delTT	p.Leu665IlefsTer8	p.L665Ifs*8	ENST00000257430	NM_000038.5	664	acTTta/acta																																																																														
APC	0	MSKCC	GRCh37	5	112175745	112175746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGATACTTTATTACATTTTGCCACAGAAAGTACTCCAGATGGAT			P-0027487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	32	235	0	ENST00000257430.4:c.4478_4479insAGAAAGTACTCCAGATGGATTGATACTTTATTACATTTTGCCAC	p.Phe1500LeufsTer22	p.F1500Lfs*22	ENST00000257430	NM_000038.5	1485	gct/gcTGATACTTTATTACATTTTGCCACAGAAAGTACTCCAGATGGATt																																																																														
NSD1	0	MSKCC	GRCh37	5	176638783	176638783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	257	569	0	ENST00000439151.2:c.3383C>T	p.Ser1128Phe	p.S1128F	ENST00000439151	NM_022455.4	1128	tCt/tTt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32190344	32190344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146490163		P-0027487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	182	575	1	ENST00000375023.3:c.395G>A	p.Arg132His	p.R132H	ENST00000375023	NM_004557.3	132	cGc/cAc																																																																														
MYD88	0	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	8	286	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																														
TP53	0	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	54	613	0	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg																																																																														
LATS1	0	MSKCC	GRCh37	6	150004217	150004217	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	84	310	0	ENST00000253339.5:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000253339		670	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0027489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	153	497	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
ERCC2	0	MSKCC	GRCh37	19	45868134	45868134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143960980		P-0027489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	192	741	0	ENST00000391945.4:c.556C>T	p.Arg186Cys	p.R186C	ENST00000391945	NM_000400.3	186	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	157	441	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664864	138664893	+	inframe_deletion	In_Frame_Del	DEL	GCGGCTGCAGCCGCAGCTGCTGCAGCCGCT	GCGGCTGCAGCCGCAGCTGCTGCAGCCGCT	-			P-0027491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	97	176	5	ENST00000330315.3:c.672_701del	p.Ala225_Ala234del	p.A225_A234del	ENST00000330315	NM_023067.3	224	gcAGCGGCTGCAGCAGCTGCGGCTGCAGCCGCg/gcg																																																																														
MET	0	MSKCC	GRCh37	7	116339943	116339943	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	37	348	0	ENST00000397752.3:c.805C>G	p.Leu269Val	p.L269V	ENST00000397752	NM_000245.2	269	Cta/Gta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	255	422	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SOX17	0	MSKCC	GRCh37	8	55371785	55371785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	227	221	0	ENST00000297316.4:c.475C>A	p.Leu159Met	p.L159M	ENST00000297316	NM_022454.3	159	Ctg/Atg																																																																														
ATM	0	MSKCC	GRCh37	11	108099912	108099912	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	142	206	0	ENST00000278616.4:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000278616	NM_000051.3	65	Cag/Tag																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420330	88420330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	84	365	0	ENST00000360948.2:c.2356G>T	p.Gly786Cys	p.G786C	ENST00000360948	NM_001012338.2	786	Ggt/Tgt																																																																														
PAK7	0	MSKCC	GRCh37	20	9525075	9525075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	138	529	0	ENST00000353224.5:c.1810G>T	p.Val604Phe	p.V604F	ENST00000353224	NM_177990.2	604	Gtt/Ttt																																																																														
SRC	0	MSKCC	GRCh37	20	36022660	36022660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	127	569	0	ENST00000358208.4:c.533G>T	p.Arg178Leu	p.R178L	ENST00000358208		178	cGa/cTa																																																																														
NSD1	0	MSKCC	GRCh37	5	176665385	176665385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	210	307	0	ENST00000439151.2:c.4069G>C	p.Ala1357Pro	p.A1357P	ENST00000439151	NM_022455.4	1357	Gct/Cct																																																																														
FYN	0	MSKCC	GRCh37	6	111995788	111995788	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	149	380	0	ENST00000368678.4:c.1310A>T	p.Tyr437Phe	p.Y437F	ENST00000368678		437	tAc/tTc																																																																														
CARD11	0	MSKCC	GRCh37	7	2984016	2984016	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	266	474	0	ENST00000396946.4:c.514G>T	p.Glu172Ter	p.E172*	ENST00000396946	NM_032415.4	172	Gag/Tag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970999	21971450	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTG	TCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTG	-			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	94	561	0	ENST00000304494.5:c.151-243_359del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970999	21971450	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTG	TCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTG	-			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	94	561	0	ENST00000304494.5:c.151-243_359del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21970999	21971450	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTG	TCCTCAGCCAGGTCCACGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCTGCCCATCATCATGACCTGCCAGAGAGAACAGAATGGTCAGAGCCAGGGTGGGGGCCGGCATGACGGAAAGGAAGCTTGTGTAGAGCCCCCTCACCGCCAAGCAGACCCCCACACAAGCCCCAGGTGTCTAATTACCCCTACATTTGCTTCCAGTTTCCAATTTCCTTCTTGAGTTCTCTATCCATTCTTCAGTACACAATGAATTCCATTATATCCTCCGAACTTCTGCGGAGCTGTCGTCACAGGCAGAGAGCACTG	-			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	94	561	0	ENST00000304494.5:c.151-243_359del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
MED12	0	MSKCC	GRCh37	X	70341479	70341479	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	71	530	0	ENST00000374080.3:c.914T>A	p.Leu305Gln	p.L305Q	ENST00000374080		305	cTg/cAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76938929	76938929	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	79	612	0	ENST00000373344.5:c.1819G>T	p.Glu607Ter	p.E607*	ENST00000373344	NM_000489.3	607	Gaa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0027493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	149	517	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	166	593	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
EGFR	0	MSKCC	GRCh37	7	55242494	55242494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	150	466	1	ENST00000275493.2:c.2264C>A	p.Ala755Asp	p.A755D	ENST00000275493	NM_005228.3	755	gCc/gAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9916136	9916136	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	90	351	0	ENST00000330684.3:c.2153T>G	p.Val718Gly	p.V718G	ENST00000330684	NM_001134407.1	718	gTc/gGc																																																																														
ATR	0	MSKCC	GRCh37	3	142171989	142171989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	115	538	0	ENST00000350721.4:c.7742G>A	p.Gly2581Glu	p.G2581E	ENST00000350721	NM_001184.3	2581	gGa/gAa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	113	379	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	160	436	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
TSHR	0	MSKCC	GRCh37	14	81609934	81609934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	44	177	0	ENST00000298171.2:c.1532C>T	p.Thr511Met	p.T511M	ENST00000298171	NM_000369.2	511	aCg/aTg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911510	114911514	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAA	AAGAA	-			P-0027494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	57	211	0	ENST00000543371.1:c.1033_1037del	p.Lys345GlufsTer9	p.K345Efs*9	ENST00000543371	NM_001198531.1	343	gAAGAA/g																																																																														
ATM	0	MSKCC	GRCh37	11	108106556	108106556	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	77	315	0	ENST00000278616.4:c.491G>A	p.Trp164Ter	p.W164*	ENST00000278616	NM_000051.3	164	tGg/tAg																																																																														
APC	0	MSKCC	GRCh37	5	112173783	112173783	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0027494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	67	284	0	ENST00000257430.4:c.2492T>G	p.Leu831Ter	p.L831*	ENST00000257430	NM_000038.5	831	tTa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7578425	7578427	+	missense_variant	Missense_Mutation	ONP	TGT	TGT	AGG			P-0027495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	28	545	0	ENST00000269305.4:c.503_505delinsCCT	p.His168_Met169delinsProLeu	p.H168_M169delinsPL	ENST00000269305	NM_001126112.2	168	cACAtg/cCCTtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	77	338	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68844244	68844244	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0027499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	146	386	0	ENST00000261769.5:c.832G>T	p.Gly278Ter	p.G278*	ENST00000261769	NM_004360.3	278	Gga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578374	7578375	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0027075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	197	489	0	ENST00000269305.4:c.555_556del	p.Ser185ArgfsTer23	p.S185Rfs*23	ENST00000269305	NM_001126112.2	185	agCGat/agat																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805807	46805807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	151	498	1	ENST00000290295.7:c.149C>A	p.Pro50His	p.P50H	ENST00000290295	NM_006361.5	50	cCc/cAc																																																																														
ACVR1	0	MSKCC	GRCh37	2	158626878	158626878	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0027075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	166	322	0	ENST00000263640.3:c.790+2T>G		p.X264_splice	ENST00000263640	NM_001105.4	264																																																																															
EPHB1	0	MSKCC	GRCh37	3	134670718	134670718	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	161	452	0	ENST00000398015.3:c.629T>G	p.Met210Arg	p.M210R	ENST00000398015	NM_004441.4	210	aTg/aGg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	29	409	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
FLT4	0	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	64	703	2	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			557	146	613	2	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
BAP1	0	MSKCC	GRCh37	3	52436393	52436393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	138	595	0	ENST00000460680.1:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000460680	NM_004656.3	701	Cgc/Tgc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	141	394	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
CIC	0	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	100	705	2	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89337296	89337296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	143	516	2	ENST00000301030.4:c.7735C>T	p.Arg2579Cys	p.R2579C	ENST00000301030	NM_001256183.1	2579	Cgc/Tgc																																																																														
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	151	515	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	97	382	0	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			870	214	850	1	ENST00000301030.4:c.4382_4384delAGA	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857925	9857925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	126	576	0	ENST00000330684.3:c.3476G>A	p.Arg1159His	p.R1159H	ENST00000330684	NM_001134407.1	1159	cGc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40713407	40713407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs768298187		P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			730	44	596	3	ENST00000373198.4:c.4108C>T	p.Arg1370Cys	p.R1370C	ENST00000373198	NM_133170.3	1370	Cgc/Tgc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81927315	81927315	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	161	643	0	ENST00000359376.3:c.988T>C	p.Tyr330His	p.Y330H	ENST00000359376	NM_002661.3	330	Tac/Cac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845477	72845477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	132	461	0	ENST00000268489.5:c.3863C>T	p.Thr1288Met	p.T1288M	ENST00000268489	NM_006885.3	1288	aCg/aTg																																																																														
RB1	0	MSKCC	GRCh37	13	48954379	48954379	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	98	408	0	ENST00000267163.4:c.1498+2T>C		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																															
CSF3R	0	MSKCC	GRCh37	1	36935322	36935323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			670	67	727	1	ENST00000361632.4:c.1404dupC	p.Ser469GlnfsTer5	p.S469Qfs*5	ENST00000361632		468	-/C																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	131	589	1	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222475	53222475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	166	357	0	ENST00000375401.3:c.4357C>T	p.Arg1453Trp	p.R1453W	ENST00000375401	NM_004187.3	1453	Cgg/Tgg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061168	38061195	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGGCTGCTTCTCGCACTTGAAGC	GCCCCCGGCTGCTTCTCGCACTTGAAGC	-			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			177	85	180	0	ENST00000250448.2:c.794_821del	p.Arg265ProfsTer47	p.R265Pfs*47	ENST00000250448	NM_004496.3	265	cGCTTCAAGTGCGAGAAGCAGCCGGGGGCc/cc																																																																														
MSH2	0	MSKCC	GRCh37	2	47705557	47705561	+	frameshift_variant	Frame_Shift_Del	DEL	AACTT	AACTT	-			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			286	97	442	0	ENST00000233146.2:c.2358_2362del	p.Glu786AspfsTer11	p.E786Dfs*11	ENST00000233146	NM_000251.2	786	gAACTT/g																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16042482	16042482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	84	461	4	ENST00000268712.3:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000268712	NM_006311.3	398	Cgg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16248837	16248837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			504	115	574	0	ENST00000375759.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000375759	NM_015001.2	615	Gaa/Aaa																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9778953	9778955	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	70	604	0	ENST00000377346.4:c.1228_1230del	p.Lys410del	p.K410del	ENST00000377346	NM_005026.3	408	AAG/-																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64128044	64128044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	69	659	0	ENST00000334205.4:c.442G>C	p.Ala148Pro	p.A148P	ENST00000334205	NM_003942.2	148	Gcc/Ccc																																																																														
KDM5A	0	MSKCC	GRCh37	12	394816	394816	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	29	461	0	ENST00000399788.2:c.4879C>T	p.Gln1627Ter	p.Q1627*	ENST00000399788	NM_001042603.1	1627	Caa/Taa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432560	49432560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			725	54	652	0	ENST00000301067.7:c.8579G>A	p.Arg2860His	p.R2860H	ENST00000301067	NM_003482.3	2860	cGt/cAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434618	49434620	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			720	71	766	1	ENST00000301067.7:c.6933_6935del	p.Ser2312del	p.S2312del	ENST00000301067	NM_003482.3	2311	tcCTCa/tca																																																																														
IRS2	0	MSKCC	GRCh37	13	110436360	110436360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	96	467	1	ENST00000375856.3:c.2041G>A	p.Ala681Thr	p.A681T	ENST00000375856	NM_003749.2	681	Gcc/Acc																																																																														
BRD4	0	MSKCC	GRCh37	19	15355204	15355204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147958185		P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	157	701	2	ENST00000263377.2:c.2419G>A	p.Val807Ile	p.V807I	ENST00000263377	NM_058243.2	807	Gtc/Atc																																																																														
JAK3	0	MSKCC	GRCh37	19	17946803	17946803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	156	705	1	ENST00000458235.1:c.1844G>A	p.Arg615His	p.R615H	ENST00000458235	NM_000215.3	615	cGt/cAt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18266717	18266717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			561	61	641	1	ENST00000222254.8:c.28C>T	p.Arg10Cys	p.R10C	ENST00000222254	NM_005027.3	10	Cgc/Tgc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36219933	36219933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	83	695	0	ENST00000222270.7:c.4735C>T	p.Arg1579Cys	p.R1579C	ENST00000222270	NM_014727.1	1579	Cgt/Tgt																																																																														
INPP4A	0	MSKCC	GRCh37	2	99169415	99169415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	34	391	0	ENST00000074304.5:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000074304	NM_001134224.1	449	Gcc/Acc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267324	198267324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			604	152	641	0	ENST00000335508.6:c.2033C>T	p.Ala678Val	p.A678V	ENST00000335508	NM_012433.2	678	gCc/gTc																																																																														
ERG	0	MSKCC	GRCh37	21	39755719	39755719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	142	554	0	ENST00000288319.7:c.1046G>A	p.Arg349Gln	p.R349Q	ENST00000288319	NM_182918.3	349	cGg/cAg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259150	89259150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	107	451	0	ENST00000336596.2:c.294G>T	p.Glu98Asp	p.E98D	ENST00000336596	NM_005233.5	98	gaG/gaT																																																																														
TET2	0	MSKCC	GRCh37	4	106157730	106157732	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	103	348	0	ENST00000380013.4:c.2636_2638del	p.Leu879del	p.L879del	ENST00000380013	NM_001127208.2	877	gaTCTt/gat																																																																														
RICTOR	0	MSKCC	GRCh37	5	39021189	39021189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	81	615	0	ENST00000357387.3:c.147G>T	p.Gln49His	p.Q49H	ENST00000357387	NM_152756.3	49	caG/caT																																																																														
APC	0	MSKCC	GRCh37	5	112175926	112175927	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	74	359	0	ENST00000257430.4:c.4636_4637del	p.Asn1546Ter	p.N1546*	ENST00000257430	NM_000038.5	1545	tcAAat/tcat																																																																														
NSD1	0	MSKCC	GRCh37	5	176721772	176721772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	42	487	1	ENST00000439151.2:c.7403G>A	p.Arg2468Gln	p.R2468Q	ENST00000439151	NM_022455.4	2468	cGg/cAg																																																																														
PAX5	0	MSKCC	GRCh37	9	36840604	36840604	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	177	662	2	ENST00000358127.4:c.1129C>T	p.Arg377Ter	p.R377*	ENST00000358127	NM_001280556.1	377	Cga/Tga																																																																														
BIRC3	0	MSKCC	GRCh37	11	102196200	102196200	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	89	255	0	ENST00000263464.3:c.857A>G	p.Asn286Ser	p.N286S	ENST00000263464	NM_001165.4	286	aAc/aGc																																																																														
SRC	0	MSKCC	GRCh37	20	36031209	36031209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	157	727	0	ENST00000358208.4:c.1328C>T	p.Thr443Ile	p.T443I	ENST00000358208		443	aCc/aTc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0027219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	134	638	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32180333	32180333	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	31	742	1	ENST00000375023.3:c.2598C>A	p.Phe866Leu	p.F866L	ENST00000375023	NM_004557.3	866	ttC/ttA																																																																														
AGO2	0	MSKCC	GRCh37	8	141559213	141559213	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	11	678	0	ENST00000220592.5:c.1588G>A	p.Ala530Thr	p.A530T	ENST00000220592	NM_012154.3	530	Gcc/Acc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	36	484	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PLK2	0	MSKCC	GRCh37	5	57750439	57750439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	92	457	0	ENST00000274289.3:c.2029C>G	p.Leu677Val	p.L677V	ENST00000274289	NM_006622.3	677	Ctg/Gtg																																																																														
EGFR	0	MSKCC	GRCh37	7	55240681	55240681	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	157	680	0	ENST00000275493.2:c.1925A>C	p.Lys642Thr	p.K642T	ENST00000275493	NM_005228.3	642	aAg/aCg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	352	481	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0027227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	151	324	0				ENST00000310581	NM_198253.2																																																																																
CRLF2	0	MSKCC	GRCh37	X	1321372	1321372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	269	500	0	ENST00000381566.1:c.383C>T	p.Ser128Leu	p.S128L	ENST00000381566		128	tCg/tTg																																																																														
FANCA	0	MSKCC	GRCh37	16	89836312	89836312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	268	769	0	ENST00000389301.3:c.2437C>T	p.Pro813Ser	p.P813S	ENST00000389301	NM_000135.2	813	Cct/Tct																																																																														
TERT	0	MSKCC	GRCh37	5	1293875	1293875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	445	848	1	ENST00000310581.5:c.1126C>T	p.Pro376Ser	p.P376S	ENST00000310581	NM_198253.2	376	Ccc/Tcc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188238	32188238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	120	716	0	ENST00000375023.3:c.1103C>T	p.Ser368Phe	p.S368F	ENST00000375023	NM_004557.3	368	tCc/tTc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143326451	143326451	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	119	362	0	ENST00000262992.4:c.163C>G	p.Arg55Gly	p.R55G	ENST00000262992	NM_001101669.1	55	Cgt/Ggt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061852	38061852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	297	986	0	ENST00000250448.2:c.137C>T	p.Thr46Ile	p.T46I	ENST00000250448	NM_004496.3	46	aCc/aTc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740663	58740663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	220	626	0	ENST00000305921.3:c.1568C>T	p.Ala523Val	p.A523V	ENST00000305921	NM_003620.3	523	gCc/gTc																																																																														
CALR	0	MSKCC	GRCh37	19	13049566	13049566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	196	685	1	ENST00000316448.5:c.73G>A	p.Glu25Lys	p.E25K	ENST00000316448	NM_004343.3	25	Gag/Aag																																																																														
JAK3	0	MSKCC	GRCh37	19	17943705	17943705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	103	660	1	ENST00000458235.1:c.2384C>T	p.Ala795Val	p.A795V	ENST00000458235	NM_000215.3	795	gCc/gTc																																																																														
MST1R	0	MSKCC	GRCh37	3	49933776	49933776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	222	702	0	ENST00000296474.3:c.2501C>T	p.Pro834Leu	p.P834L	ENST00000296474	NM_002447.2	834	cCc/cTc																																																																														
NPM1	0	MSKCC	GRCh37	5	170814992	170814992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	122	366	0	ENST00000296930.5:c.40C>T	p.Pro14Ser	p.P14S	ENST00000296930	NM_002520.6	14	Ccc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	141	387	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0027336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	95	468	0				ENST00000310581	NM_198253.2																																																																																
MTOR	0	MSKCC	GRCh37	1	11174873	11174873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	162	494	0	ENST00000361445.4:c.7161G>A	p.Met2387Ile	p.M2387I	ENST00000361445	NM_004958.3	2387	atG/atA																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972418	32972418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	148	589	0	ENST00000380152.3:c.9768G>C	p.Glu3256Asp	p.E3256D	ENST00000380152		3256	gaG/gaC																																																																														
TET2	0	MSKCC	GRCh37	4	106196580	106196580	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0027336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	87	382	0	ENST00000380013.4:c.4913C>G	p.Ser1638Ter	p.S1638*	ENST00000380013	NM_001127208.2	1638	tCa/tGa																																																																														
FAT1	0	MSKCC	GRCh37	4	187518143	187518143	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	174	450	0	ENST00000441802.2:c.12551G>C	p.Gly4184Ala	p.G4184A	ENST00000441802	NM_005245.3	4184	gGa/gCa																																																																														
BTK	0	MSKCC	GRCh37	X	100609625	100609625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	157	199	0	ENST00000308731.7:c.1624C>A	p.Leu542Met	p.L542M	ENST00000308731	NM_000061.2	542	Ctg/Atg																																																																														
STAG2	0	MSKCC	GRCh37	X	123200063	123200064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	152	173	0	ENST00000218089.9:c.2137dup	p.Tyr713LeufsTer15	p.Y713Lfs*15	ENST00000218089	NM_001042749.1	712	aat/aaTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	207	510	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	40	327	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12013744	12013744	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0027341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	42	339	0	ENST00000353533.5:c.685+1G>C		p.X229_splice	ENST00000353533	NM_003010.3	229																																																																															
NCOR1	0	MSKCC	GRCh37	17	16075157	16075157	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	55	316	0	ENST00000268712.3:c.395del	p.Pro132ArgfsTer6	p.P132Rfs*6	ENST00000268712	NM_006311.3	132	cCg/cg																																																																														
PAX5	0	MSKCC	GRCh37	9	36966610	36966610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	57	523	0	ENST00000358127.4:c.716G>A	p.Arg239His	p.R239H	ENST00000358127	NM_001280556.1	239	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	166	291	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	244	442	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	206	426	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	206	426	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	203	439	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	203	439	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021655	31021655	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs143952412		P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	249	425	0	ENST00000375687.4:c.1654A>G	p.Ile552Val	p.I552V	ENST00000375687	NM_015338.5	552	Att/Gtt																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430574	78430574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	101	358	0	ENST00000370768.2:c.716G>A	p.Gly239Glu	p.G239E	ENST00000370768	NM_003902.3	239	gGa/gAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89624290	89624290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	208	397	0	ENST00000371953.3:c.64G>C	p.Asp22His	p.D22H	ENST00000371953	NM_000314.4	22	Gac/Cac																																																																														
RAD52	0	MSKCC	GRCh37	12	1036417	1036417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	220	488	0	ENST00000358495.3:c.361C>T	p.His121Tyr	p.H121Y	ENST00000358495	NM_134424.2	121	Cat/Tat																																																																														
MGA	0	MSKCC	GRCh37	15	42041075	42041075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	301	450	1	ENST00000219905.7:c.5453G>A	p.Arg1818Gln	p.R1818Q	ENST00000219905	NM_001164273.1	1818	cGa/cAa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098547	11098547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	281	576	0	ENST00000344626.4:c.1065C>G	p.Ile355Met	p.I355M	ENST00000344626	NM_003072.3	355	atC/atG																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128420028	128420028	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	242	581	0	ENST00000265960.3:c.400C>G	p.Pro134Ala	p.P134A	ENST00000265960	NM_001006617.1	134	Cca/Gca																																																																														
CDH1	0	MSKCC	GRCh37	16	68862082	68862083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	41	387	0	ENST00000261769.5:c.2172dup	p.Leu725SerfsTer23	p.L725Sfs*23	ENST00000261769	NM_004360.3	724	att/aTtt																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	13	687	2	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	15	477	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44870260	44870260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	26	284	0	ENST00000377967.4:c.439C>T	p.Gln147Ter	p.Q147*	ENST00000377967	NM_021140.2	147	Cag/Tag																																																																														
TSC1	0	MSKCC	GRCh37	9	135802635	135802635	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	24	534	1	ENST00000298552.3:c.163C>T	p.Gln55Ter	p.Q55*	ENST00000298552	NM_001162426.1	55	Cag/Tag																																																																														
STAG2	0	MSKCC	GRCh37	X	123224595	123224595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	29	310	0	ENST00000218089.9:c.3448C>G	p.Gln1150Glu	p.Q1150E	ENST00000218089	NM_001042749.1	1150	Caa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	193	745	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	163	647	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	214	492	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81969884	81969884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840870		P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	193	749	2	ENST00000359376.3:c.2953G>A	p.Val985Ile	p.V985I	ENST00000359376	NM_002661.3	985	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	61	325	0	ENST00000257430.4:c.4059_4060del	p.Glu1353AspfsTer21	p.E1353Dfs*21	ENST00000257430	NM_000038.5	1353	gaATtt/gatt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031859	10031859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	177	730	1	ENST00000330684.3:c.964G>A	p.Gly322Arg	p.G322R	ENST00000330684	NM_001134407.1	322	Ggg/Agg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133553	55133553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	102	692	0	ENST00000257290.5:c.857G>A	p.Gly286Glu	p.G286E	ENST00000257290	NM_006206.4	286	gGa/gAa																																																																														
APC	0	MSKCC	GRCh37	5	112175643	112175643	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	101	510	0	ENST00000257430.4:c.4353del	p.Val1452TyrfsTer21	p.V1452Yfs*21	ENST00000257430	NM_000038.5	1451	gAa/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	249	634	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
SPOP	0	MSKCC	GRCh37	17	47696461	47696461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	87	493	0	ENST00000347630.2:c.362G>C	p.Arg121Pro	p.R121P	ENST00000347630	NM_001007230.1	121	cGg/cCg																																																																														
FAT1	0	MSKCC	GRCh37	4	187531024	187531025	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	115	625	0	ENST00000441802.2:c.9998dup	p.Val3334CysfsTer13	p.V3334Cfs*13	ENST00000441802	NM_005245.3	3333	cct/ccCt																																																																														
FLT4	0	MSKCC	GRCh37	5	180057739	180057739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	165	641	0	ENST00000261937.6:c.216C>A	p.Asp72Glu	p.D72E	ENST00000261937	NM_182925.4	72	gaC/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	39	618	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	53	828	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
RAD51	0	MSKCC	GRCh37	15	40993283	40993283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	27	570	1	ENST00000267868.3:c.109G>A	p.Asp37Asn	p.D37N	ENST00000267868	NM_002875.4	37	Gat/Aat																																																																														
RNF43	0	MSKCC	GRCh37	17	56440652	56440652	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	59	727	0	ENST00000407977.2:c.566del	p.Lys189ArgfsTer14	p.K189Rfs*14	ENST00000407977		189	aAg/ag																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871827	12871833	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTCTG	GGTTCTG	-			P-0027395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	40	361	2	ENST00000228872.4:c.544_550del	p.Gly182TrpfsTer41	p.G182Wfs*41	ENST00000228872	NM_004064.3	182	GGTTCTGtg/tg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	115	526	8	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68842387	68842387	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	163	666	5	ENST00000261769.5:c.448A>T	p.Arg150Ter	p.R150*	ENST00000261769	NM_004360.3	150	Aga/Tga																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453141	+	protein_altering_variant	In_Frame_Del	DEL	ACTGTA	ACTGTA	CGT			P-0026830-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			613	105	448	2	ENST00000288602.6:c.1794_1799delinsACG	p.Thr599_Val600delinsArg	p.T599_V600delinsR	ENST00000288602	NM_004333.4	598	gcTACAGTg/gcACGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	22	503	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856458	111856458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	23	321	1	ENST00000341259.2:c.509C>T	p.Ala170Val	p.A170V	ENST00000341259	NM_005475.2	170	gCt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0027251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	419	615	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	195	514	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
EED	0	MSKCC	GRCh37	11	85963188	85963188	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0027251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	92	292	0	ENST00000263360.6:c.268-2A>G		p.X90_splice	ENST00000263360	NM_003797.3	90																																																																															
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	43	554	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	35	529	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057682	27057682	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	43	592	0	ENST00000324856.7:c.1390C>T	p.Gln464Ter	p.Q464*	ENST00000324856	NM_006015.4	464	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	17	488	1	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
AURKB	0	MSKCC	GRCh37	17	8111095	8111095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	75	633	1	ENST00000585124.1:c.112G>T	p.Ala38Ser	p.A38S	ENST00000585124	NM_004217.3	38	Gca/Tca																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	25	414	0	ENST00000304494.5:c.188T>G	p.Leu63Arg	p.L63R	ENST00000304494	NM_000077.4	63	cTg/cGg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	25	414	0	ENST00000304494.5:c.188T>G	p.Leu63Arg	p.L63R	ENST00000304494	NM_000077.4	63	cTg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0027256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	138	373	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061194	38061555	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAACATGTTGCCGGAGTCCGGGTGCAGCGTCCAGTAGGAGCCCTTGCCCGGCTTGTCCGGGGAGCGTGCCACCTTGACGAAGCAGTCATTGAAGGACAGCGAGTGGCGGATGGAGTTCTGCCAGCGCTGCTGGTTCTGCCGGTAATAGGGGAAGAGGTCCATGATCCACTGGTAGATCTCGCTCAGCGTGAGCATCTTGCTGGGCGCCTGCTGGATGGCCATGGTGATGAGCGAGATGTACGAGTAGGGCGGCTTGGCGTGCGGGTAGCTGCGCTTGAACGTCTTGGCGTCGCCGCCGCCGCCCGCGCGGCTGCGGCCCAGGTTGGACG	GCGCTTCTGGCGGCGCAAGTAGCAGCCGTTCTCGAACATGTTGCCGGAGTCCGGGTGCAGCGTCCAGTAGGAGCCCTTGCCCGGCTTGTCCGGGGAGCGTGCCACCTTGACGAAGCAGTCATTGAAGGACAGCGAGTGGCGGATGGAGTTCTGCCAGCGCTGCTGGTTCTGCCGGTAATAGGGGAAGAGGTCCATGATCCACTGGTAGATCTCGCTCAGCGTGAGCATCTTGCTGGGCGCCTGCTGGATGGCCATGGTGATGAGCGAGATGTACGAGTAGGGCGGCTTGGCGTGCGGGTAGCTGCGCTTGAACGTCTTGGCGTCGCCGCCGCCGCCCGCGCGGCTGCGGCCCAGGTTGGACG	-			P-0027256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	76	502	0	ENST00000250448.2:c.434_795del	p.Pro145LeufsTer27	p.P145Lfs*27	ENST00000250448	NM_004496.3	145	cCGTCCAACCTGGGCCGCAGCCGCGCGGGCGGCGGCGGCGACGCCAAGACGTTCAAGCGCAGCTACCCGCACGCCAAGCCGCCCTACTCGTACATCTCGCTCATCACCATGGCCATCCAGCAGGCGCCCAGCAAGATGCTCACGCTGAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTATTACCGGCAGAACCAGCAGCGCTGGCAGAACTCCATCCGCCACTCGCTGTCCTTCAATGACTGCTTCGTCAAGGTGGCACGCTCCCCGGACAAGCCGGGCAAGGGCTCCTACTGGACGCTGCACCCGGACTCCGGCAACATGTTCGAGAACGGCTGCTACTTGCGCCGCCAGAAGCGC/c																																																																														
RAD51C	0	MSKCC	GRCh37	17	56780690	56780690	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	265	457	0	ENST00000337432.4:c.705G>T	p.Lys235Asn	p.K235N	ENST00000337432	NM_058216.2	235	aaG/aaT																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128305355	128305355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	295	610	1	ENST00000265960.3:c.941G>A	p.Gly314Glu	p.G314E	ENST00000265960	NM_001006617.1	314	gGa/gAa																																																																														
CBL	0	MSKCC	GRCh37	11	119148931	119148931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	303	519	0	ENST00000264033.4:c.1151G>A	p.Cys384Tyr	p.C384Y	ENST00000264033	NM_005188.3	384	tGt/tAt																																																																														
MITF	0	MSKCC	GRCh37	3	69788788	69788788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	253	416	0	ENST00000352241.4:c.40G>C	p.Gly14Arg	p.G14R	ENST00000352241	NM_198159.2	14	Ggg/Cgg																																																																														
EGFR	0	MSKCC	GRCh37	7	55241717	55241717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	175	571	0	ENST00000275493.2:c.2165C>T	p.Ala722Val	p.A722V	ENST00000275493	NM_005228.3	722	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	62	434	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20156715	20156715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	73	456	1	ENST00000379607.5:c.42G>T	p.Arg14Ser	p.R14S	ENST00000379607	NM_001412.3	14	agG/agT																																																																														
ATM	0	MSKCC	GRCh37	11	108117757	108117757	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	25	402	0	ENST00000278616.4:c.968T>G	p.Ile323Arg	p.I323R	ENST00000278616	NM_000051.3	323	aTa/aGa																																																																														
TBX3	0	MSKCC	GRCh37	12	115109962	115109962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	19	959	0	ENST00000257566.3:c.1916G>T	p.Arg639Leu	p.R639L	ENST00000257566	NM_016569.3	639	cGc/cTc																																																																														
EZH1	0	MSKCC	GRCh37	17	40870504	40870504	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	99	542	0	ENST00000428826.2:c.899G>C	p.Arg300Pro	p.R300P	ENST00000428826		300	cGg/cCg																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740709	58740709	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	50	626	1	ENST00000305921.3:c.1614A>T	p.Leu538Phe	p.L538F	ENST00000305921	NM_003620.3	538	ttA/ttT																																																																														
TP63	0	MSKCC	GRCh37	3	189526078	189526079	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	44	548	1	ENST00000264731.3:c.342_343delinsTT	p.Gly115Trp	p.G115W	ENST00000264731	NM_003722.4	114	ctGGgg/ctTTgg																																																																														
NSD1	0	MSKCC	GRCh37	5	176636677	176636677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	18	432	0	ENST00000439151.2:c.1277G>T	p.Gly426Val	p.G426V	ENST00000439151	NM_022455.4	426	gGa/gTa																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36653554	36653554	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	79	550	0	ENST00000244741.5:c.472A>G	p.Ile158Val	p.I158V	ENST00000244741	NM_000389.4	158	Atc/Gtc																																																																														
CARD11	0	MSKCC	GRCh37	7	2951835	2951836	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0027347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	51	759	1	ENST00000396946.4:c.3114_3115delinsAA	p.Pro1039Thr	p.P1039T	ENST00000396946	NM_032415.4	1038	gcCCct/gcAAct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	296	543	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991727	72991727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	139	379	0	ENST00000268489.5:c.2318C>T	p.Ala773Val	p.A773V	ENST00000268489	NM_006885.3	773	gCg/gTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	385	780	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0027351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	118	370	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087528	27087528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	448	733	0	ENST00000324856.7:c.2102G>T	p.Gly701Val	p.G701V	ENST00000324856	NM_006015.4	701	gGc/gTc																																																																														
RBM10	0	MSKCC	GRCh37	X	47039344	47039344	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	477	881	0	ENST00000329236.7:c.736T>G	p.Tyr246Asp	p.Y246D	ENST00000329236	NM_001204466.1	246	Tac/Gac																																																																														
ELF3	0	MSKCC	GRCh37	1	201984424	201984424	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	256	719	0	ENST00000359651.3:c.1090del	p.Glu364LysfsTer83	p.E364Kfs*83	ENST00000359651		363	gaG/ga																																																																														
PTEN	0	MSKCC	GRCh37	10	89717640	89717646	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAGAT	TGAAGAT	-			P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	39	497	0	ENST00000371953.3:c.665_671del	p.Val222AspfsTer32	p.V222Dfs*32	ENST00000371953	NM_000314.4	222	gTGAAGATa/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	189	519	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TRAF7	0	MSKCC	GRCh37	16	2225558	2225558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1182	90	936	1	ENST00000326181.6:c.1561C>A	p.His521Asn	p.H521N	ENST00000326181	NM_032271.2	521	Cac/Aac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3799627	3799627	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs200782888		P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	204	657	1	ENST00000262367.5:c.3836+1G>A		p.X1279_splice	ENST00000262367	NM_004380.2	1279																																																																															
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	297	817	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368223	45368223	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	26	460	0	ENST00000262160.6:c.1379C>A	p.Ser460Ter	p.S460*	ENST00000262160	NM_005901.5	460	tCa/tAa																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395753	45395753	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	124	464	0	ENST00000262160.6:c.381del	p.Tyr128IlefsTer35	p.Y128Ifs*35	ENST00000262160	NM_005901.5	127	atA/at																																																																														
AXL	0	MSKCC	GRCh37	19	41744489	41744489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1241	117	990	1	ENST00000301178.4:c.1109C>T	p.Ala370Val	p.A370V	ENST00000301178	NM_021913.4	370	gCg/gTg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259207	36259207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	260	916	0	ENST00000300305.3:c.284C>T	p.Pro95Leu	p.P95L	ENST00000300305		95	cCc/cTc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41278082	41278082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	156	418	0	ENST00000349496.5:c.1958C>G	p.Thr653Arg	p.T653R	ENST00000349496	NM_001904.3	653	aCa/aGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	177	835	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591102	67591102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	33	421	1	ENST00000274335.5:c.1695C>A	p.Ser565Arg	p.S565R	ENST00000274335		565	agC/agA																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591128	67591128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	29	434	0	ENST00000274335.5:c.1721G>T	p.Arg574Ile	p.R574I	ENST00000274335		574	aGa/aTa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741440	145741440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	296	1036	2	ENST00000428558.2:c.1063C>T	p.Arg355Trp	p.R355W	ENST00000428558	NM_004260.3	355	Cgg/Tgg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44966741	44966741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	66	364	0	ENST00000377967.4:c.3965G>A	p.Arg1322Gln	p.R1322Q	ENST00000377967	NM_021140.2	1322	cGg/cAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	192	707	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	94	886	4	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	206	623	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt																																																																														
MSH2	0	MSKCC	GRCh37	2	47705596	47705596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	97	419	0	ENST00000233146.2:c.2396A>G	p.Asn799Ser	p.N799S	ENST00000233146	NM_000251.2	799	aAt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	36	532	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PREX2	0	MSKCC	GRCh37	8	68972969	68972969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	48	568	0	ENST00000288368.4:c.1294G>A	p.Val432Met	p.V432M	ENST00000288368	NM_024870.2	432	Gtg/Atg																																																																														
GATA1	0	MSKCC	GRCh37	X	48652353	48652353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	50	535	1	ENST00000376670.3:c.1024G>A	p.Gly342Ser	p.G342S	ENST00000376670	NM_002049.3	342	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	214	642	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499354	89499354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	55	358	1	ENST00000336596.2:c.2524C>T	p.Arg842Ter	p.R842*	ENST00000336596	NM_005233.5	842	Cga/Tga																																																																														
CBFB	0	MSKCC	GRCh37	16	67100696	67100696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	248	564	0	ENST00000412916.2:c.394G>A	p.Ala132Thr	p.A132T	ENST00000412916		132	Gcc/Acc																																																																														
CDH1	0	MSKCC	GRCh37	16	68842334	68842334	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	227	464	0	ENST00000261769.5:c.397del	p.Ser133LeufsTer82	p.S133Lfs*82	ENST00000261769	NM_004360.3	132	gTt/gt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37883105	37883105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	160	807	0	ENST00000269571.5:c.3008C>T	p.Thr1003Ile	p.T1003I	ENST00000269571		1003	aCc/aTc																																																																														
MET	0	MSKCC	GRCh37	7	116395496	116395496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	62	501	1	ENST00000397752.3:c.1789G>A	p.Asp597Asn	p.D597N	ENST00000397752	NM_000245.2	597	Gat/Aat																																																																														
KDM6A	0	MSKCC	GRCh37	X	44970656	44970656	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	A	A	-			P-0027357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	190	516	0	ENST00000377967.4:c.4206del	p.Ter1402CysfsTer136	p.*1402Cfs*136	ENST00000377967	NM_021140.2	1402	tgA/tg																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134079	41134079	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	23	414	0	ENST00000379561.5:c.1549A>T	p.Met517Leu	p.M517L	ENST00000379561	NM_002015.3	517	Atg/Ttg																																																																														
PALB2	0	MSKCC	GRCh37	16	23641349	23641349	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	80	738	0	ENST00000261584.4:c.2126A>G	p.Asn709Ser	p.N709S	ENST00000261584	NM_024675.3	709	aAt/aGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578234	7578234	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	23	706	0	ENST00000269305.4:c.615T>A	p.Tyr205Ter	p.Y205*	ENST00000269305	NM_001126112.2	205	taT/taA																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0027359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	25	550	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	18	945	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578550	7578556	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GAGTACT	GAGTACT	AGA			P-0027359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	211	903	1	ENST00000269305.4:c.376-2_380delinsTCT		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
BRD4	0	MSKCC	GRCh37	19	15355330	15355330	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	61	398	0	ENST00000263377.2:c.2293C>A	p.Pro765Thr	p.P765T	ENST00000263377	NM_058243.2	765	Cca/Aca																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0027359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	115	346	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
FAT1	0	MSKCC	GRCh37	4	187532603	187532603	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	29	348	0	ENST00000441802.2:c.9790G>T	p.Glu3264Ter	p.E3264*	ENST00000441802	NM_005245.3	3264	Gaa/Taa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509799	106509799	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	60	640	0	ENST00000359195.3:c.1793G>A	p.Trp598Ter	p.W598*	ENST00000359195	NM_002649.2	598	tGg/tAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007179-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			673	65	462	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007179-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			850	85	621	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195511	102195511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007179-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			593	35	412	0	ENST00000263464.3:c.271C>A	p.Pro91Thr	p.P91T	ENST00000263464	NM_001165.4	91	Cct/Act																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023144	27023159	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGGCGGAGCCG	GGCGGCGGCGGAGCCG	TC			P-0007179-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			95	47	62	0	ENST00000324856.7:c.250_265delinsTC	p.Gly84SerfsTer22	p.G84Sfs*22	ENST00000324856	NM_006015.4	84	GGCGGCGGCGGAGCCGgc/TCgc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971075	21971101	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CCAGCGTGTCCAGGAAGCCCTCCCGGG	CCAGCGTGTCCAGGAAGCCCTCCCGGG	T			P-0007179-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			588	37	510	0	ENST00000361570.3:c.423_449delinsA	p.Cys141Ter	p.C141*	ENST00000361570	NM_058195.3	141	tgCCCGGGAGGGCTTCCTGGACACGCTGGt/tgAt																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971075	21971101	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CCAGCGTGTCCAGGAAGCCCTCCCGGG	CCAGCGTGTCCAGGAAGCCCTCCCGGG	T			P-0007179-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			588	37	510	0	ENST00000361570.3:c.423_449delinsA	p.Cys141Ter	p.C141*	ENST00000361570	NM_058195.3	141	tgCCCGGGAGGGCTTCCTGGACACGCTGGt/tgAt																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971075	21971101	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CCAGCGTGTCCAGGAAGCCCTCCCGGG	CCAGCGTGTCCAGGAAGCCCTCCCGGG	T			P-0007179-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			588	37	510	0	ENST00000361570.3:c.423_449delinsA	p.Cys141Ter	p.C141*	ENST00000361570	NM_058195.3	141	tgCCCGGGAGGGCTTCCTGGACACGCTGGt/tgAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			156	588	433	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	319	693	1	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25972769	25972769	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	108	327	0	ENST00000435504.4:c.1656A>C	p.Lys552Asn	p.K552N	ENST00000435504		552	aaA/aaC																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361130	66361130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			113	92	292	0	ENST00000273854.3:c.1042G>T	p.Asp348Tyr	p.D348Y	ENST00000273854	NM_004439.5	348	Gat/Tat																																																																														
APC	0	MSKCC	GRCh37	5	112177095	112177095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	70	407	0	ENST00000257430.4:c.5804A>T	p.Gln1935Leu	p.Q1935L	ENST00000257430	NM_000038.5	1935	cAg/cTg																																																																														
MDC1	0	MSKCC	GRCh37	6	30680734	30680734	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	61	431	1	ENST00000376406.3:c.985A>T	p.Ser329Cys	p.S329C	ENST00000376406	NM_014641.2	329	Agc/Tgc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8526642	8526642	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	72	448	2	ENST00000356435.5:c.553G>T	p.Gly185Cys	p.G185C	ENST00000356435		185	Ggt/Tgt																																																																														
DIS3	0	MSKCC	GRCh37	13	73346976	73346976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			81	76	248	0	ENST00000377767.4:c.1241G>T	p.Gly414Val	p.G414V	ENST00000377767	NM_014953.3	414	gGa/gTa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3820576	3820576	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	340	579	0	ENST00000262367.5:c.2875A>G	p.Thr959Ala	p.T959A	ENST00000262367	NM_004380.2	959	Aca/Gca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993714	72993714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	68	441	0	ENST00000268489.5:c.331G>A	p.Glu111Lys	p.E111K	ENST00000268489	NM_006885.3	111	Gag/Aag																																																																														
PLCG2	0	MSKCC	GRCh37	16	81972475	81972475	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			168	146	564	0	ENST00000359376.3:c.3268T>A	p.Cys1090Ser	p.C1090S	ENST00000359376	NM_002661.3	1090	Tgt/Agt																																																																														
RAD51C	0	MSKCC	GRCh37	17	56770089	56770089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			808	81	530	0	ENST00000337432.4:c.85T>C	p.Ser29Pro	p.S29P	ENST00000337432	NM_058216.2	29	Tct/Cct																																																																														
RPTOR	0	MSKCC	GRCh37	17	78897336	78897336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			354	504	691	0	ENST00000306801.3:c.2671G>T	p.Asp891Tyr	p.D891Y	ENST00000306801	NM_020761.2	891	Gat/Tat																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212059	5212059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	88	583	1	ENST00000357368.4:c.4972G>A	p.Ala1658Thr	p.A1658T	ENST00000357368	NM_002850.3	1658	Gca/Aca																																																																														
TSC1	0	MSKCC	GRCh37	9	135781059	135781083	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTGTTTCCTTTTGCTTTCTTTAA	CTGTGTTTCCTTTTGCTTTCTTTAA	-			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	149	548	0	ENST00000298552.3:c.1882_1906del	p.Leu628ArgfsTer17	p.L628Rfs*17	ENST00000298552	NM_001162426.1	628	TTAAAGAAAGCAAAAGGAAACACAGag/ag																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533104	63533104	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			302	423	595	0	ENST00000307078.5:c.1790del	p.Gly597GlufsTer92	p.G597Efs*92	ENST00000307078	NM_004655.3	597	gGa/ga																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988508	36988508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2336	190	932	0	ENST00000354822.5:c.145C>G	p.Pro49Ala	p.P49A	ENST00000354822	NM_001079668.2	49	Ccc/Gcc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346951	89346951	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008837-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			174	45	288	0	ENST00000301030.4:c.5999T>G	p.Leu2000Arg	p.L2000R	ENST00000301030	NM_001256183.1	2000	cTc/cGc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026370-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	385	650	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0026370-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	644	677	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0026370-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			69	354	362	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0026370-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			99	669	632	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
INHBA	0	MSKCC	GRCh37	7	41729814	41729814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026370-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	232	292	0	ENST00000242208.4:c.715G>T	p.Asp239Tyr	p.D239Y	ENST00000242208	NM_002192.2	239	Gac/Tac																																																																														
WT1	0	MSKCC	GRCh37	11	32439142	32439142	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026370-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			773	221	615	0	ENST00000332351.3:c.931T>G	p.Leu311Val	p.L311V	ENST00000332351	NM_024426.4	311	Tta/Gta																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348456	89348456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026370-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			741	259	780	1	ENST00000301030.4:c.4494C>A	p.Asp1498Glu	p.D1498E	ENST00000301030	NM_001256183.1	1498	gaC/gaA																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209306	98209306	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026370-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	106	672	1	ENST00000331920.6:c.4232A>T	p.Asp1411Val	p.D1411V	ENST00000331920	NM_000264.3	1411	gAc/gTc																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027218-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	205	133	1	ENST00000345146.2:c.394C>A	p.Arg132Ser	p.R132S	ENST00000345146	NM_005896.2	132	Cgt/Agt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0027294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	78	305	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	22	399	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0027294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	474	699	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	45	220	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	306	416	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	48	276	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																														
FAT1	0	MSKCC	GRCh37	4	187557927	187557927	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	149	397	0	ENST00000441802.2:c.3784C>T	p.Arg1262Ter	p.R1262*	ENST00000441802	NM_005245.3	1262	Cga/Tga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	702	841	1	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343382	118343382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	23	345	1	ENST00000534358.1:c.1508G>A	p.Arg503Gln	p.R503Q	ENST00000534358	NM_005933.3	503	cGg/cAg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271926	15271926	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	459	781	0	ENST00000263388.2:c.6513T>G	p.Asp2171Glu	p.D2171E	ENST00000263388	NM_000435.2	2171	gaT/gaG																																																																														
XPO1	0	MSKCC	GRCh37	2	61719838	61719838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	19	471	0	ENST00000401558.2:c.1430C>T	p.Thr477Ile	p.T477I	ENST00000401558	NM_003400.3	477	aCa/aTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860272	151860289	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	GCATAAAATCACAAGGTA	GCATAAAATCACAAGGTA	-			P-0027294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	85	428	0	ENST00000262189.6:c.10373_10390del	p.Leu3458_Gln3464delinsTer	p.L3458_Q3464delins*	ENST00000262189	NM_170606.2	3458	tTACCTTGTGATTTTATGCaa/taa																																																																														
AMER1	0	MSKCC	GRCh37	X	63410922	63410923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	132	566	0	ENST00000330258.3:c.2244_2245insA	p.Ser749IlefsTer4	p.S749Ifs*4	ENST00000330258	NM_152424.3	748	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	29	435	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MSH6	0	MSKCC	GRCh37	2	48026253	48026253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	123	355	0	ENST00000234420.5:c.1131G>C	p.Lys377Asn	p.K377N	ENST00000234420	NM_000179.2	377	aaG/aaC																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	749	725	5	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	119	334	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120318	94120318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41273629		P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	204	242	0	ENST00000369303.4:c.733G>A	p.Ala245Thr	p.A245T	ENST00000369303	NM_004440.3	245	Gcc/Acc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741660	17741660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	246	646	1	ENST00000250003.3:c.331C>T	p.Arg111Cys	p.R111C	ENST00000250003	NM_002478.4	111	Cgc/Tgc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482439	56482446	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGGGT	AGGTGGGT	-			P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	101	533	0	ENST00000267101.3:c.988+2_988+9del		p.X330_splice	ENST00000267101	NM_001982.3	330																																																																															
SOX9	0	MSKCC	GRCh37	17	70120169	70120169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	432	455	0	ENST00000245479.2:c.1171C>T	p.Gln391Ter	p.Q391*	ENST00000245479	NM_000346.3	391	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112174276	112174276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	124	315	1	ENST00000257430.4:c.2985C>A	p.Cys995Ter	p.C995*	ENST00000257430	NM_000038.5	995	tgC/tgA																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738497	145738497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1574	221	613	0	ENST00000428558.2:c.2488A>G	p.Arg830Gly	p.R830G	ENST00000428558	NM_004260.3	830	Aga/Gga																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	107	448	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	75	431	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937723	36937723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	75	350	0	ENST00000361632.4:c.1015G>A	p.Asp339Asn	p.D339N	ENST00000361632		339	Gac/Aac																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435460	18435460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	19	219	0	ENST00000266497.5:c.445A>T	p.Thr149Ser	p.T149S	ENST00000266497		149	Aca/Tca																																																																														
PRKD1	0	MSKCC	GRCh37	14	30098267	30098267	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	27	422	0	ENST00000331968.5:c.1705T>G	p.Cys569Gly	p.C569G	ENST00000331968	NM_002742.2	569	Tgc/Ggc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15950288	15950288	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	25	588	0	ENST00000268712.3:c.6656C>G	p.Ser2219Cys	p.S2219C	ENST00000268712	NM_006311.3	2219	tCt/tGt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222999	5222999	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	49	473	0	ENST00000357368.4:c.2804T>G	p.Leu935Arg	p.L935R	ENST00000357368	NM_002850.3	935	cTg/cGg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249523	153249523	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	29	389	0	ENST00000281708.4:c.1255G>T	p.Gly419Ter	p.G419*	ENST00000281708	NM_033632.3	419	Gga/Tga																																																																														
ROS1	0	MSKCC	GRCh37	6	117663678	117663678	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	15	267	0	ENST00000368508.3:c.4554A>C	p.Glu1518Asp	p.E1518D	ENST00000368508	NM_002944.2	1518	gaA/gaC																																																																														
EP300	0	MSKCC	GRCh37	22	41564852	41564852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	203	543	0	ENST00000263253.7:c.4153T>C	p.Cys1385Arg	p.C1385R	ENST00000263253	NM_001429.3	1385	Tgc/Cgc																																																																														
DAXX	0	MSKCC	GRCh37	6	33289143	33289151	+	inframe_deletion	In_Frame_Del	DEL	GGGCCTTGA	GGGCCTTGA	-			P-0027300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	78	562	0	ENST00000374542.5:c.401_409del	p.Leu134_Ala136del	p.L134_A136del	ENST00000374542	NM_001141970.1	134	cTCAAGGCCCac/cac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	245	624	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7579470	7579470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	110	645	0	ENST00000269305.4:c.217G>C	p.Val73Leu	p.V73L	ENST00000269305	NM_001126112.2	73	Gtg/Ctg																																																																														
RBM10	0	MSKCC	GRCh37	X	47041429	47041429	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	178	645	0	ENST00000329236.7:c.1542del	p.Asn515ThrfsTer111	p.N515Tfs*111	ENST00000329236	NM_001204466.1	513	gaC/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0027305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	67	90	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RHOA	0	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	116	91	0	ENST00000418115.1:c.125A>T	p.Tyr42Phe	p.Y42F	ENST00000418115	NM_001664.2	42	tAt/tTt																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910668	29910668	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	244	174	0	ENST00000376809.5:c.208G>C	p.Glu70Gln	p.E70Q	ENST00000376809	NM_002116.7	70	Gag/Cag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	132	325	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	63	279	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	14	69	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	69	286	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
JAK3	0	MSKCC	GRCh37	19	17945948	17945948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1321	169	740	1	ENST00000458235.1:c.1991C>T	p.Pro664Leu	p.P664L	ENST00000458235	NM_000215.3	664	cCg/cTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70118941	70118942	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAC			P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	329	731	0	ENST00000245479.2:c.514_516dup	p.Tyr172dup	p.Y172dup	ENST00000245479	NM_000346.3	172	-/TAC																																																																														
APC	0	MSKCC	GRCh37	5	112175463	112175464	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027310-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	101	240	0	ENST00000257430.4:c.4174dup	p.Ser1392PhefsTer3	p.S1392Ffs*3	ENST00000257430	NM_000038.5	1391	agt/agTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	101	481	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	126	679	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	53	321	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	153	237	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578402	7578402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	206	375	0	ENST00000269305.4:c.528C>A	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgC/tgA																																																																														
SMYD3	0	MSKCC	GRCh37	1	246027173	246027173	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	55	429	0	ENST00000388985.4:c.829A>G	p.Thr277Ala	p.T277A	ENST00000388985		277	Act/Gct																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343871	118343871	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	48	411	0	ENST00000534358.1:c.1997G>C	p.Gly666Ala	p.G666A	ENST00000534358	NM_005933.3	666	gGt/gCt																																																																														
JAK3	0	MSKCC	GRCh37	19	17954626	17954626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	79	868	2	ENST00000458235.1:c.268G>A	p.Val90Met	p.V90M	ENST00000458235	NM_000215.3	90	Gtg/Atg																																																																														
ATR	0	MSKCC	GRCh37	3	142217458	142217458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	90	365	1	ENST00000350721.4:c.5539G>A	p.Gly1847Arg	p.G1847R	ENST00000350721	NM_001184.3	1847	Gga/Aga																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652246	36652246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	129	567	0	ENST00000244741.5:c.368C>T	p.Ser123Leu	p.S123L	ENST00000244741	NM_000389.4	123	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	47	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0027319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	82	804	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	73	671	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	73	671	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	73	671	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593399	48593400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0027319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	13	267	0	ENST00000342988.3:c.1151_1152dup	p.Lys385AlafsTer31	p.K385Afs*31	ENST00000342988	NM_005359.5	384	ggc/gGCgc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879131	151879131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	48	488	1	ENST00000262189.6:c.5814G>A	p.Met1938Ile	p.M1938I	ENST00000262189	NM_170606.2	1938	atG/atA																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	164	367	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0027322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	78	222	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0027322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	297	675	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TCF7L2	0	MSKCC	GRCh37	10	114903718	114903718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	177	793	0	ENST00000543371.1:c.722C>T	p.Pro241Leu	p.P241L	ENST00000543371	NM_001198531.1	241	cCg/cTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9546832	9546832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	102	434	0	ENST00000353224.5:c.1190C>T	p.Thr397Met	p.T397M	ENST00000353224	NM_177990.2	397	aCg/aTg																																																																														
SETD2	0	MSKCC	GRCh37	3	47158129	47158129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	98	561	0	ENST00000409792.3:c.4570C>T	p.Leu1524Phe	p.L1524F	ENST00000409792	NM_014159.6	1524	Ctt/Ttt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0027323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	125	446	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	98	810	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32936802	32936802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	69	390	0	ENST00000380152.3:c.7948G>C	p.Glu2650Gln	p.E2650Q	ENST00000380152		2650	Gaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	65	298	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RB1	0	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	28	106	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	172	345	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	122	410	2	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	252	421	2	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	78	166	1	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	55	246	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	86	208	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31381362	31381362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113400552		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	183	284	0	ENST00000328111.2:c.1087C>T	p.Arg363Cys	p.R363C	ENST00000328111	NM_006892.3	363	Cgt/Tgt																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950546	38950546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	69	278	0	ENST00000357387.3:c.3404C>T	p.Thr1135Met	p.T1135M	ENST00000357387	NM_152756.3	1135	aCg/aTg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188317	32188317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144492578		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	267	471	0	ENST00000375023.3:c.1024G>A	p.Val342Met	p.V342M	ENST00000375023	NM_004557.3	342	Gtg/Atg																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	99	176	1	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372184	55372184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	196	419	2	ENST00000297316.4:c.874G>A	p.Ala292Thr	p.A292T	ENST00000297316	NM_022454.3	292	Gcc/Acc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514619	103514619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	62	275	0	ENST00000355739.4:c.1120G>A	p.Ala374Thr	p.A374T	ENST00000355739	NM_000123.3	374	Gca/Aca																																																																														
FAT1	0	MSKCC	GRCh37	4	187531024	187531025	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	48	291	0	ENST00000441802.2:c.9998_9999delCT	p.Pro3333ArgfsTer13	p.P3333Rfs*13	ENST00000441802	NM_005245.3	3333	cCT/c																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	131	286	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	232	502	2	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	146	275	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
LATS1	0	MSKCC	GRCh37	6	150005515	150005515	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	125	207	0	ENST00000253339.5:c.710del	p.Pro237HisfsTer6	p.P237Hfs*6	ENST00000253339		237	cCa/ca																																																																														
POLE	0	MSKCC	GRCh37	12	133244133	133244133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	60	310	1	ENST00000320574.5:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000320574	NM_006231.2	759	Cgt/Tgt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576120	88576120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147160868		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	201	498	1	ENST00000360948.2:c.1553G>A	p.Arg518His	p.R518H	ENST00000360948	NM_001012338.2	518	cGt/cAt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470498	25470498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	236	468	0	ENST00000264709.3:c.976C>T	p.Arg326Cys	p.R326C	ENST00000264709	NM_175629.2	326	Cgc/Tgc																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664856	138664856	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	112	176	0	ENST00000330315.3:c.709G>T	p.Gly237Cys	p.G237C	ENST00000330315	NM_023067.3	237	Ggt/Tgt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399976	139399976	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200495793		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	263	595	1	ENST00000277541.6:c.4372G>A	p.Ala1458Thr	p.A1458T	ENST00000277541	NM_017617.3	1458	Gcg/Acg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs765875917		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	89	105	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	191	444	4	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
IGF1R	0	MSKCC	GRCh37	15	99467906	99467906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	85	162	0	ENST00000268035.6:c.2775G>T	p.Gln925His	p.Q925H	ENST00000268035	NM_000875.3	925	caG/caT																																																																														
STAT3	0	MSKCC	GRCh37	17	40476813	40476813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	153	337	1	ENST00000264657.5:c.1516G>A	p.Glu506Lys	p.E506K	ENST00000264657	NM_139276.2	506	Gag/Aag																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31383227	31383227	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148132847		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	159	284	0	ENST00000328111.2:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000328111	NM_006892.3	380	cGa/cAa																																																																														
EGFL7	0	MSKCC	GRCh37	9	139564768	139564768	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	244	507	0	ENST00000308874.7:c.561delC	p.Asn188ThrfsTer9	p.N188Tfs*9	ENST00000308874		186	gCc/gc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1301	294	761	0	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																														
FOXP1	0	MSKCC	GRCh37	3	71021818	71021818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	50	89	0	ENST00000318789.4:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000318789	NM_032682.5	514	Cgt/Tgt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212371	36212371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	237	527	1	ENST00000222270.7:c.2122G>A	p.Ala708Thr	p.A708T	ENST00000222270	NM_014727.1	708	Gcc/Acc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31466354	31466354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	150	416	0	ENST00000344624.3:c.2401C>T	p.Arg801Cys	p.R801C	ENST00000344624		801	Cgc/Tgc																																																																														
PARP1	0	MSKCC	GRCh37	1	226578316	226578316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs193238922		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	166	264	2	ENST00000366794.5:c.412C>T	p.Arg138Cys	p.R138C	ENST00000366794	NM_001618.3	138	Cgc/Tgc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46726495	46726495	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	92	216	0	ENST00000371975.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000371975	NM_003579.3	192	Cag/Tag																																																																														
CDC73	0	MSKCC	GRCh37	1	193121534	193121534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	25	183	0	ENST00000367435.3:c.932C>G	p.Thr311Ser	p.T311S	ENST00000367435	NM_024529.4	311	aCt/aGt																																																																														
ELF3	0	MSKCC	GRCh37	1	201980293	201980293	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	88	473	0	ENST00000359651.3:c.33delT	p.Phe11LeufsTer32	p.F11Lfs*32	ENST00000359651		10	aTt/at																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310895	123310895	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141796960		P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	160	313	1	ENST00000358487.5:c.533G>A	p.Arg178His	p.R178H	ENST00000358487	NM_000141.4	178	cGc/cAc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948832	71948832	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	303	679	2	ENST00000298229.2:c.3544G>T	p.Ala1182Ser	p.A1182S	ENST00000298229	NM_001567.3	1182	Gca/Tca																																																																														
PAK1	0	MSKCC	GRCh37	11	77090406	77090406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	150	269	0	ENST00000356341.3:c.319C>T	p.Leu107Phe	p.L107F	ENST00000356341	NM_002576.4	107	Ctt/Ttt																																																																														
CCND2	0	MSKCC	GRCh37	12	4409065	4409065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	56	258	0	ENST00000261254.3:c.760C>T	p.Leu254Phe	p.L254F	ENST00000261254	NM_001759.3	254	Ctc/Ttc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478927	56478927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	217	489	1	ENST00000267101.3:c.383G>A	p.Ser128Asn	p.S128N	ENST00000267101	NM_001982.3	128	aGc/aAc																																																																														
PTPN11	5781	MSKCC	GRCh37	12	112910829	112910829	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	173	304	1	ENST00000351677.2:c.842del	p.Asn281ThrfsTer58	p.N281Tfs*58	ENST00000351677	NM_002834.3	280	Aaa/aa																																																																														
IRS2	0	MSKCC	GRCh37	13	110435774	110435774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	136	276	2	ENST00000375856.3:c.2627G>A	p.Arg876His	p.R876H	ENST00000375856	NM_003749.2	876	cGc/cAc																																																																														
IRS2	0	MSKCC	GRCh37	13	110437104	110437104	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	33	166	0	ENST00000375856.3:c.1297A>G	p.Met433Val	p.M433V	ENST00000375856	NM_003749.2	433	Atg/Gtg																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986526	36986526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	163	615	2	ENST00000354822.5:c.1163G>A	p.Gly388Asp	p.G388D	ENST00000354822	NM_001079668.2	388	gGc/gAc																																																																														
TSHR	0	MSKCC	GRCh37	14	81422191	81422192	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	49	255	0	ENST00000298171.2:c.169_170del	p.Leu57GlufsTer4	p.L57Efs*4	ENST00000298171	NM_000369.2	56	aCT/a																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43767762	43767762	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	152	226	0	ENST00000382044.4:c.1085+1G>A		p.X362_splice	ENST00000382044	NM_001141980.1	362																																																																															
BLM	0	MSKCC	GRCh37	15	91358460	91358460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	149	396	0	ENST00000355112.3:c.4205C>T	p.Pro1402Leu	p.P1402L	ENST00000355112	NM_000057.2	1402	cCg/cTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72984828	72984828	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	47	314	0	ENST00000268489.5:c.2756del	p.Gly919AlafsTer9	p.G919Afs*9	ENST00000268489	NM_006885.3	919	gGc/gc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993737	72993737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	127	286	0	ENST00000268489.5:c.308G>C	p.Arg103Pro	p.R103P	ENST00000268489	NM_006885.3	103	cGc/cCc																																																																														
FANCA	0	MSKCC	GRCh37	16	89815165	89815165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	207	460	0	ENST00000389301.3:c.3250C>T	p.Arg1084Cys	p.R1084C	ENST00000389301	NM_000135.2	1084	Cgc/Tgc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120042	70120043	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	33	51	0	ENST00000245479.2:c.1049dup	p.Gln351ThrfsTer227	p.Q351Tfs*227	ENST00000245479	NM_000346.3	348	-/C																																																																														
RPTOR	0	MSKCC	GRCh37	17	78727982	78727982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	105	217	1	ENST00000306801.3:c.827G>A	p.Arg276His	p.R276H	ENST00000306801	NM_020761.2	276	cGc/cAc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2227036	2227036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	294	543	0	ENST00000398665.3:c.4516G>T	p.Gly1506Cys	p.G1506C	ENST00000398665	NM_032482.2	1506	Ggc/Tgc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4110631	4110631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	199	390	0	ENST00000262948.5:c.326C>T	p.Pro109Leu	p.P109L	ENST00000262948	NM_030662.3	109	cCg/cTg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18280067	18280067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	152	231	1	ENST00000222254.8:c.2150G>A	p.Arg717His	p.R717H	ENST00000222254	NM_005027.3	717	cGc/cAc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214714	36214714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	128	343	1	ENST00000222270.7:c.3145del	p.Ala1049ArgfsTer133	p.A1049Rfs*133	ENST00000222270	NM_014727.1	1047	cGg/cg																																																																														
CD79A	0	MSKCC	GRCh37	19	42383649	42383649	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	152	403	0	ENST00000221972.3:c.424A>C	p.Asn142His	p.N142H	ENST00000221972	NM_021601.3	142	Aac/Cac																																																																														
CIC	0	MSKCC	GRCh37	19	42791528	42791528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	255	561	0	ENST00000575354.2:c.509G>A	p.Arg170Gln	p.R170Q	ENST00000575354	NM_015125.3	170	cGg/cAg																																																																														
MSH2	0	MSKCC	GRCh37	2	47705445	47705445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	69	170	0	ENST00000233146.2:c.2245G>A	p.Glu749Lys	p.E749K	ENST00000233146	NM_000251.2	749	Gaa/Aaa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99179943	99179943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	111	441	0	ENST00000074304.5:c.1886C>T	p.Ala629Val	p.A629V	ENST00000074304	NM_001134224.1	629	gCc/gTc																																																																														
SETD2	0	MSKCC	GRCh37	3	47205398	47205398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	145	361	1	ENST00000409792.3:c.17C>T	p.Pro6Leu	p.P6L	ENST00000409792	NM_014159.6	6	cCg/cTg																																																																														
TET2	0	MSKCC	GRCh37	4	106164884	106164884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	137	260	0	ENST00000380013.4:c.3752C>T	p.Thr1251Met	p.T1251M	ENST00000380013	NM_001127208.2	1251	aCg/aTg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31406979	31406979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	84	390	0	ENST00000344624.3:c.3928G>T	p.Gly1310Cys	p.G1310C	ENST00000344624		1310	Ggc/Tgc																																																																														
RASA1	0	MSKCC	GRCh37	5	86674330	86674330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	40	129	0	ENST00000274376.6:c.2462T>C	p.Ile821Thr	p.I821T	ENST00000274376	NM_002890.2	821	aTa/aCa																																																																														
APC	0	MSKCC	GRCh37	5	112177565	112177565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	62	197	0	ENST00000257430.4:c.6274C>A	p.Leu2092Ile	p.L2092I	ENST00000257430	NM_000038.5	2092	Cta/Ata																																																																														
APC	0	MSKCC	GRCh37	5	112177672	112177672	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	26	176	0	ENST00000257430.4:c.6381A>C	p.Gln2127His	p.Q2127H	ENST00000257430	NM_000038.5	2127	caA/caC																																																																														
TAP1	0	MSKCC	GRCh37	6	32816452	32816452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	238	486	2	ENST00000354258.4:c.1723C>T	p.Arg575Cys	p.R575C	ENST00000354258	NM_000593.5	575	Cgc/Tgc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94124485	94124485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	22	248	0	ENST00000369303.4:c.98T>G	p.Val33Gly	p.V33G	ENST00000369303	NM_004440.3	33	gTa/gGa																																																																														
DUSP4	0	MSKCC	GRCh37	8	29207401	29207401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	184	315	1	ENST00000240100.2:c.395G>A	p.Arg132His	p.R132H	ENST00000240100	NM_001394.6	132	cGc/cAc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101908871	101908871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	112	274	1	ENST00000374994.4:c.1235C>T	p.Ala412Val	p.A412V	ENST00000374994	NM_004612.2	412	gCt/gTt																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128347904	128347904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	223	472	2	ENST00000265960.3:c.601G>A	p.Ala201Thr	p.A201T	ENST00000265960	NM_001006617.1	201	Gcc/Acc																																																																														
TSC1	0	MSKCC	GRCh37	9	135802685	135802685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	103	168	0	ENST00000298552.3:c.113G>T	p.Gly38Val	p.G38V	ENST00000298552	NM_001162426.1	38	gGc/gTc																																																																														
BTK	0	MSKCC	GRCh37	X	100613671	100613673	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0027324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	99	126	0	ENST00000308731.7:c.906_908del	p.Gly303del	p.G303del	ENST00000308731	NM_000061.2	302	ggAGGt/ggt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0027326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	60	298	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032574	12032574	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	98	483	0	ENST00000353533.5:c.1013del	p.Pro338ArgfsTer25	p.P338Rfs*25	ENST00000353533	NM_003010.3	337	tCc/tc																																																																														
TP53	0	MSKCC	GRCh37	17	7578520	7578520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	380	771	2	ENST00000269305.4:c.410T>A	p.Leu137Gln	p.L137Q	ENST00000269305	NM_001126112.2	137	cTg/cAg																																																																														
PAK7	0	MSKCC	GRCh37	20	9546581	9546581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	48	474	0	ENST00000353224.5:c.1441G>T	p.Asp481Tyr	p.D481Y	ENST00000353224	NM_177990.2	481	Gac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	272	577	2				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	456	571	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	218	200	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	218	200	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
EP300	0	MSKCC	GRCh37	22	41547924	41547924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	511	570	0	ENST00000263253.7:c.2905G>A	p.Glu969Lys	p.E969K	ENST00000263253	NM_001429.3	969	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056241	27056241	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	469	597	1	ENST00000324856.7:c.1237C>T	p.Gln413Ter	p.Q413*	ENST00000324856	NM_006015.4	413	Caa/Taa																																																																														
TET1	0	MSKCC	GRCh37	10	70451131	70451131	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	163	596	0	ENST00000373644.4:c.5971G>C	p.Asp1991His	p.D1991H	ENST00000373644	NM_030625.2	1991	Gat/Cat																																																																														
ATM	0	MSKCC	GRCh37	11	108128292	108128292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	86	447	2	ENST00000278616.4:c.2335A>G	p.Met779Val	p.M779V	ENST00000278616	NM_000051.3	779	Atg/Gtg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344147	118344147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	510	426	0	ENST00000534358.1:c.2273G>C	p.Arg758Thr	p.R758T	ENST00000534358	NM_005933.3	758	aGa/aCa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426694	49426694	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	233	228	0	ENST00000301067.7:c.11794C>T	p.Gln3932Ter	p.Q3932*	ENST00000301067	NM_003482.3	3932	Caa/Taa																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281451	49281451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	284	532	0	ENST00000282018.3:c.498C>G	p.Ile166Met	p.I166M	ENST00000282018	NM_020377.2	166	atC/atG																																																																														
PALB2	0	MSKCC	GRCh37	16	23641335	23641335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45537237		P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	169	715	3	ENST00000261584.4:c.2140G>A	p.Asp714Asn	p.D714N	ENST00000261584	NM_024675.3	714	Gat/Aat																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351208	89351208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	301	617	1	ENST00000301030.4:c.1742C>T	p.Ser581Phe	p.S581F	ENST00000301030	NM_001256183.1	581	tCt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7573960	7573960	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	335	687	0	ENST00000269305.4:c.1067G>C	p.Gly356Ala	p.G356A	ENST00000269305	NM_001126112.2	356	gGg/gCg																																																																														
SPOP	0	MSKCC	GRCh37	17	47677846	47677846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	138	582	0	ENST00000347630.2:c.1019C>T	p.Ser340Leu	p.S340L	ENST00000347630	NM_001007230.1	340	tCa/tTa																																																																														
SOX9	0	MSKCC	GRCh37	17	70118870	70118870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	420	507	0	ENST00000245479.2:c.442G>A	p.Glu148Lys	p.E148K	ENST00000245479	NM_000346.3	148	Gag/Aag																																																																														
INSR	0	MSKCC	GRCh37	19	7184568	7184568	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	339	416	0	ENST00000302850.5:c.733C>G	p.Gln245Glu	p.Q245E	ENST00000302850	NM_000208.2	245	Cag/Gag																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18272301	18272301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	15	26	0	ENST00000222254.8:c.811G>A	p.Asp271Asn	p.D271N	ENST00000222254	NM_005027.3	271	Gac/Aac																																																																														
EP300	0	MSKCC	GRCh37	22	41547972	41547972	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	580	632	0	ENST00000263253.7:c.2953G>C	p.Asp985His	p.D985H	ENST00000263253	NM_001429.3	985	Gat/Cat																																																																														
EP300	0	MSKCC	GRCh37	22	41548254	41548256	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	AA			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	324	387	1	ENST00000263253.7:c.3042_3044delinsAA	p.Arg1015LysfsTer5	p.R1015Kfs*5	ENST00000263253	NM_001429.3	1014	gaGAGa/gaAAa																																																																														
EP300	0	MSKCC	GRCh37	22	41548276	41548276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	338	378	0	ENST00000263253.7:c.3064G>A	p.Glu1022Lys	p.E1022K	ENST00000263253	NM_001429.3	1022	Gaa/Aaa																																																																														
EP300	0	MSKCC	GRCh37	22	41548294	41548294	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	365	396	0	ENST00000263253.7:c.3082G>C	p.Asp1028His	p.D1028H	ENST00000263253	NM_001429.3	1028	Gac/Cac																																																																														
PPARG	0	MSKCC	GRCh37	3	12434161	12434161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	326	440	0	ENST00000287820.6:c.529G>C	p.Asp177His	p.D177H	ENST00000287820	NM_015869.4	177	Gat/Cat																																																																														
GSK3B	0	MSKCC	GRCh37	3	119642275	119642275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	144	516	0	ENST00000316626.5:c.422G>A	p.Arg141Lys	p.R141K	ENST00000316626		141	aGa/aAa																																																																														
NSD1	0	MSKCC	GRCh37	5	176678842	176678842	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	178	381	0	ENST00000439151.2:c.4753G>C	p.Glu1585Gln	p.E1585Q	ENST00000439151	NM_022455.4	1585	Gaa/Caa																																																																														
EZH2	0	MSKCC	GRCh37	7	148511196	148511196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	1193	458	0	ENST00000320356.2:c.1706C>T	p.Ala569Val	p.A569V	ENST00000320356	NM_004456.4	569	gCa/gTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859702	151859702	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	753	301	0	ENST00000262189.6:c.10960C>T	p.Gln3654Ter	p.Q3654*	ENST00000262189	NM_170606.2	3654	Caa/Taa																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209301	98209301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	340	649	0	ENST00000331920.6:c.4237C>T	p.His1413Tyr	p.H1413Y	ENST00000331920	NM_000264.3	1413	Cac/Tac																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101911488	101911488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	189	281	0	ENST00000374994.4:c.1413G>A	p.Met471Ile	p.M471I	ENST00000374994	NM_004612.2	471	atG/atA																																																																														
TSC1	0	MSKCC	GRCh37	9	135802682	135802682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	251	350	0	ENST00000298552.3:c.116C>T	p.Pro39Leu	p.P39L	ENST00000298552	NM_001162426.1	39	cCt/cTt																																																																														
BCOR	0	MSKCC	GRCh37	X	39922921	39922921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	307	344	0	ENST00000378444.4:c.3787G>C	p.Glu1263Gln	p.E1263Q	ENST00000378444	NM_001123385.1	1263	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0026971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	528	530	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185184670	185184670	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188669013		P-0026971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	101	419	2	ENST00000265026.3:c.1562G>A	p.Arg521His	p.R521H	ENST00000265026	NM_004721.4	521	cGt/cAt																																																																														
CSDE1	0	MSKCC	GRCh37	1	115263191	115263191	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	121	459	0	ENST00000438362.2:c.2159G>C	p.Arg720Pro	p.R720P	ENST00000438362	NM_001242891.1	720	cGc/cCc																																																																														
SMYD3	0	MSKCC	GRCh37	1	246021918	246021918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1438	100	539	0	ENST00000388985.4:c.956G>C	p.Arg319Pro	p.R319P	ENST00000388985		319	cGg/cCg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478899	56478899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	272	601	0	ENST00000267101.3:c.355G>C	p.Val119Leu	p.V119L	ENST00000267101	NM_001982.3	119	Gtc/Ctc																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281058	49281058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	115	631	1	ENST00000282018.3:c.105C>A	p.Asn35Lys	p.N35K	ENST00000282018	NM_020377.2	35	aaC/aaA																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281377	49281377	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	528	699	0	ENST00000282018.3:c.424C>G	p.His142Asp	p.H142D	ENST00000282018	NM_020377.2	142	Cac/Gac																																																																														
JAK3	0	MSKCC	GRCh37	19	17945952	17945953	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0027015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1327	453	736	0	ENST00000458235.1:c.1986_1987delinsTG	p.Ser663Gly	p.S663G	ENST00000458235	NM_000215.3	662	ggGAgc/ggTGgc																																																																														
XPO1	0	MSKCC	GRCh37	2	61709536	61709536	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	132	357	0	ENST00000401558.2:c.2951C>G	p.Ser984Trp	p.S984W	ENST00000401558	NM_003400.3	984	tCg/tGg																																																																														
JAK3	0	MSKCC	GRCh37	19	17945952	17945952	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1320	453	730	0	ENST00000458235.1:c.1987A>G	p.Ser663Gly	p.S663G	ENST00000458235	NM_000215.3	663	Agc/Ggc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	31	560	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	46	750	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
TET2	0	MSKCC	GRCh37	4	106190905	106190905	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	22	340	0	ENST00000380013.4:c.4182+1G>T		p.X1394_splice	ENST00000380013	NM_001127208.2	1394																																																																															
APC	0	MSKCC	GRCh37	5	112176254	112176254	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	41	443	0	ENST00000257430.4:c.4963A>G	p.Thr1655Ala	p.T1655A	ENST00000257430	NM_000038.5	1655	Aca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	164	483	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	109	632	3	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577573	7577573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	57	601	1	ENST00000269305.4:c.708C>A	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taC/taA																																																																														
WT1	0	MSKCC	GRCh37	11	32438072	32438072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	143	487	1	ENST00000332351.3:c.965G>T	p.Ser322Ile	p.S322I	ENST00000332351	NM_024426.4	322	aGc/aTc																																																																														
CDC73	0	MSKCC	GRCh37	1	193119433	193119433	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1766	126	353	0	ENST00000367435.3:c.829-1G>T		p.X277_splice	ENST00000367435	NM_024529.4	277																																																																															
SDHD	0	MSKCC	GRCh37	11	111958607	111958607	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	70	462	2	ENST00000375549.3:c.79A>T	p.Arg27Ter	p.R27*	ENST00000375549	NM_003002.3	27	Aga/Tga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484300	8484300	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	151	480	0	ENST00000356435.5:c.3232G>T	p.Glu1078Ter	p.E1078*	ENST00000356435		1078	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	136	536	1	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	70	410	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	143	352	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098894	178098895	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	122	429	0	ENST00000397062.3:c.150dup	p.Gln51ThrfsTer5	p.Q51Tfs*5	ENST00000397062	NM_006164.4	50	-/A																																																																														
APC	0	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	57	328	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																														
APC	0	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	86	258	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																														
APC	0	MSKCC	GRCh37	5	112174113	112174114	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	93	326	0	ENST00000257430.4:c.2824_2825del	p.Asn942PhefsTer3	p.N942Ffs*3	ENST00000257430	NM_000038.5	941	gAA/g																																																																														
POLE	0	MSKCC	GRCh37	12	133226318	133226318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	246	644	1	ENST00000320574.5:c.3740C>T	p.Pro1247Leu	p.P1247L	ENST00000320574	NM_006231.2	1247	cCg/cTg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715724	30715724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	263	347	0	ENST00000359013.4:c.1457G>A	p.Cys486Tyr	p.C486Y	ENST00000359013	NM_001024847.2	486	tGt/tAt																																																																														
MYOD1	0	MSKCC	GRCh37	11	17743018	17743018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	242	533	1	ENST00000250003.3:c.926C>T	p.Ala309Val	p.A309V	ENST00000250003	NM_002478.4	309	gCg/gTg																																																																														
CTCF	0	MSKCC	GRCh37	16	67645373	67645373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	132	350	1	ENST00000264010.4:c.638G>A	p.Arg213His	p.R213H	ENST00000264010	NM_006565.3	213	cGt/cAt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991999	72991999	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	201	472	0	ENST00000268489.5:c.2046C>G	p.Tyr682Ter	p.Y682*	ENST00000268489	NM_006885.3	682	taC/taG																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944174	81944174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	234	570	0	ENST00000359376.3:c.1783G>A	p.Gly595Arg	p.G595R	ENST00000359376	NM_002661.3	595	Ggg/Agg																																																																														
SOX9	0	MSKCC	GRCh37	17	70120280	70120289	+	frameshift_variant	Frame_Shift_Del	DEL	TACAGCCCCT	TACAGCCCCT	-			P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	655	683	0	ENST00000245479.2:c.1282_1291del	p.Tyr428ProfsTer39	p.Y428Pfs*39	ENST00000245479	NM_000346.3	428	TACAGCCCCTcc/cc																																																																														
CARD11	0	MSKCC	GRCh37	7	2946427	2946427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200963550		P-0027188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	239	654	0	ENST00000396946.4:c.3310C>T	p.Arg1104Trp	p.R1104W	ENST00000396946	NM_032415.4	1104	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106632	27106632	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	171	527	0	ENST00000324856.7:c.6243C>A	p.Cys2081Ter	p.C2081*	ENST00000324856	NM_006015.4	2081	tgC/tgA																																																																														
ATM	0	MSKCC	GRCh37	11	108180982	108180982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	118	297	0	ENST00000278616.4:c.5858C>T	p.Thr1953Ile	p.T1953I	ENST00000278616	NM_000051.3	1953	aCa/aTa																																																																														
MGA	0	MSKCC	GRCh37	15	41989112	41989113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	208	457	0	ENST00000219905.7:c.1907dup	p.Leu636PhefsTer21	p.L636Ffs*21	ENST00000219905	NM_001164273.1	635	tct/tcTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581183	48581183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	88	325	0	ENST00000342988.3:c.487G>A	p.Val163Met	p.V163M	ENST00000342988	NM_005359.5	163	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	150	469	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0027192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	154	336	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822354	72822354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	253	620	1	ENST00000268489.5:c.9821C>T	p.Ala3274Val	p.A3274V	ENST00000268489	NM_006885.3	3274	gCc/gTc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143033783	143033783	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	160	402	0	ENST00000262992.4:c.2188C>G	p.Pro730Ala	p.P730A	ENST00000262992	NM_001101669.1	730	Cct/Gct																																																																														
MEN1	0	MSKCC	GRCh37	11	64575366	64575367	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0027194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	481	489	0	ENST00000337652.1:c.665_666del	p.Glu222AlafsTer14	p.E222Afs*14	ENST00000337652	NM_130803.2	222	gAG/g																																																																														
TSC2	0	MSKCC	GRCh37	16	2131625	2131625	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	429	619	0	ENST00000219476.3:c.3640A>T	p.Asn1214Tyr	p.N1214Y	ENST00000219476	NM_000548.3	1214	Aac/Tac																																																																														
ATRX	0	MSKCC	GRCh37	X	76875863	76875863	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0027194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	129	220	0	ENST00000373344.5:c.5272T>C	p.Tyr1758His	p.Y1758H	ENST00000373344	NM_000489.3	1758	Tat/Cat																																																																														
GNAS	0	MSKCC	GRCh37	20	57470700	57470700	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	255	352	0	ENST00000371085.3:c.173A>G	p.Lys58Arg	p.K58R	ENST00000371085	NM_000516.4	58	aAg/aGg																																																																														
KIT	0	MSKCC	GRCh37	4	55593592	55593608	+	protein_altering_variant	In_Frame_Del	DEL	ATGAAGTACAGTGGAAG	ATGAAGTACAGTGGAAG	CT			P-0027195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	158	425	1	ENST00000288135.5:c.1658_1674delinsCT	p.Tyr553_Lys558delinsSer	p.Y553_K558delinsS	ENST00000288135	NM_000222.2	553	tATGAAGTACAGTGGAAG/tCT																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944503	40944503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	79	542	1	ENST00000373198.4:c.1999G>A	p.Glu667Lys	p.E667K	ENST00000373198	NM_133170.3	667	Gag/Aag																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18271910	18271910	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	95	565	0	ENST00000222254.8:c.513del	p.Asp172ThrfsTer15	p.D172Tfs*15	ENST00000222254	NM_005027.3	171	gcT/gc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	250	413	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0027198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	145	299	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																														
BLM	0	MSKCC	GRCh37	15	91292896	91292896	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	158	512	0	ENST00000355112.3:c.398A>T	p.Asp133Val	p.D133V	ENST00000355112	NM_000057.2	133	gAt/gTt																																																																														
CTCF	0	MSKCC	GRCh37	16	67645883	67645883	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	202	435	1	ENST00000264010.4:c.811T>C	p.Cys271Arg	p.C271R	ENST00000264010	NM_006565.3	271	Tgc/Cgc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155595	56155596	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	C			P-0027198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	170	350	0	ENST00000399503.3:c.687_688delinsC	p.Ala230LeufsTer33	p.A230Lfs*33	ENST00000399503	NM_005921.1	229	gcAGct/gcCct																																																																														
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	145	584	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0027203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	240	521	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67588143	67588144	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0027203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	128	455	0	ENST00000274335.5:c.973_974delAA	p.Asn325TyrfsTer7	p.N325Yfs*7	ENST00000274335		325	AAt/t																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30733045	30733045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	27	376	0	ENST00000359013.4:c.1733C>G	p.Ser578Trp	p.S578W	ENST00000359013	NM_001024847.2	578	tCg/tGg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	17	370	0	ENST00000371953.3:c.380G>T	p.Gly127Val	p.G127V	ENST00000371953	NM_000314.4	127	gGa/gTa																																																																														
TBX3	0	MSKCC	GRCh37	12	115112272	115112272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	49	180	1	ENST00000257566.3:c.1468G>T	p.Ala490Ser	p.A490S	ENST00000257566	NM_016569.3	490	Gcc/Tcc																																																																														
TBX3	0	MSKCC	GRCh37	12	115120776	115120776	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	144	434	1	ENST00000257566.3:c.230del	p.Pro77ArgfsTer11	p.P77Rfs*11	ENST00000257566	NM_016569.3	77	cCg/cg																																																																														
CDH1	0	MSKCC	GRCh37	16	68842595	68842595	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0027208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	43	430	0	ENST00000261769.5:c.532-1G>C		p.X178_splice	ENST00000261769	NM_004360.3	178																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0027210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	200	565	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060661	38060673	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCGCTGCCTA	GAGGCGCTGCCTA	-			P-0027210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	279	620	0	ENST00000250448.2:c.1316_1328del	p.Leu439ArgfsTer2	p.L439Rfs*2	ENST00000250448	NM_004496.3	439	cTAGGCAGCGCCTCg/cg																																																																														
TRAF7	0	MSKCC	GRCh37	16	2226368	2226368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	231	603	1	ENST00000326181.6:c.1981G>A	p.Val661Met	p.V661M	ENST00000326181	NM_032271.2	661	Gtg/Atg																																																																														
APC	0	MSKCC	GRCh37	5	112176582	112176585	+	frameshift_variant	Frame_Shift_Del	DEL	AGTT	AGTT	-			P-0027210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	124	316	0	ENST00000257430.4:c.5293_5296del	p.Leu1765MetfsTer11	p.L1765Mfs*11	ENST00000257430	NM_000038.5	1764	cAGTTa/ca																																																																														
AR	0	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	16	205	0	ENST00000374690.3:c.2632A>T	p.Thr878Ser	p.T878S	ENST00000374690	NM_000044.3	878	Act/Tct																																																																														
TP53	0	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	51	625	0	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																														
ROS1	0	MSKCC	GRCh37	6	117609735	117609735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	29	421	0	ENST00000368508.3:c.6964G>T	p.Ala2322Ser	p.A2322S	ENST00000368508	NM_002944.2	2322	Gct/Tct																																																																														
SOX17	0	MSKCC	GRCh37	8	55370798	55370798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	134	538	0	ENST00000297316.4:c.100G>A	p.Glu34Lys	p.E34K	ENST00000297316	NM_022454.3	34	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	100	499	0	ENST00000269305.4:c.796G>C	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Cga																																																																														
NEGR1	0	MSKCC	GRCh37	1	71873248	71873248	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	90	376	0	ENST00000357731.5:c.946A>C	p.Ser316Arg	p.S316R	ENST00000357731	NM_173808.2	316	Agt/Cgt																																																																														
PAK1	0	MSKCC	GRCh37	11	77047258	77047258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	152	471	0	ENST00000356341.3:c.1286A>G	p.Tyr429Cys	p.Y429C	ENST00000356341	NM_002576.4	429	tAc/tGc																																																																														
NTHL1	0	MSKCC	GRCh37	16	2089975	2089975	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	157	611	1	ENST00000219066.1:c.889T>A	p.Cys297Ser	p.C297S	ENST00000219066	NM_002528.5	297	Tgc/Agc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89341328	89341328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	72	300	1	ENST00000301030.4:c.7607G>A	p.Arg2536Gln	p.R2536Q	ENST00000301030	NM_001256183.1	2536	cGg/cAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591826	48591826	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	86	328	0	ENST00000342988.3:c.989A>C	p.Glu330Ala	p.E330A	ENST00000342988	NM_005359.5	330	gAa/gCa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15300092	15300092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	160	508	2	ENST00000263388.2:c.1184G>A	p.Cys395Tyr	p.C395Y	ENST00000263388	NM_000435.2	395	tGc/tAc																																																																														
BRD4	0	MSKCC	GRCh37	19	15378230	15378230	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	78	437	0	ENST00000263377.2:c.556A>T	p.Thr186Ser	p.T186S	ENST00000263377	NM_058243.2	186	Aca/Tca																																																																														
NCOA3	0	MSKCC	GRCh37	20	46254154	46254154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	112	443	0	ENST00000371998.3:c.286C>A	p.Gln96Lys	p.Q96K	ENST00000371998		96	Caa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	294	472	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	231	343	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	150	244	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	339	552	1	ENST00000307102.5:c.371C>T	p.Pro124Leu	p.P124L	ENST00000307102	NM_002755.3	124	cCg/cTg																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481403	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	353	370	1	ENST00000288602.6:c.1405_1406delinsTC	p.Gly469Ser	p.G469S	ENST00000288602	NM_004333.4	469	GGa/TCa																																																																														
FLT3	0	MSKCC	GRCh37	13	28622436	28622436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	253	437	0	ENST00000241453.7:c.1181A>G	p.Gln394Arg	p.Q394R	ENST00000241453	NM_004119.2	394	cAa/cGa																																																																														
DAXX	0	MSKCC	GRCh37	6	33289247	33289247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	255	377	1	ENST00000374542.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000374542	NM_001141970.1	102	tCg/tTg																																																																														
STK19	0	MSKCC	GRCh37	6	31940120	31940120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	370	610	0	ENST00000375331.2:c.262G>A	p.Glu88Lys	p.E88K	ENST00000375331	NM_004197.1	88	Gaa/Aaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546788	9546788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	181	305	0	ENST00000353224.5:c.1234C>T	p.Pro412Ser	p.P412S	ENST00000353224	NM_177990.2	412	Ccg/Tcg																																																																														
EP300	0	MSKCC	GRCh37	22	41527596	41527596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	285	481	0	ENST00000263253.7:c.1487C>T	p.Pro496Leu	p.P496L	ENST00000263253	NM_001429.3	496	cCt/cTt																																																																														
ROS1	0	MSKCC	GRCh37	6	117631443	117631443	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	133	306	0	ENST00000368508.3:c.6235G>A	p.Asp2079Asn	p.D2079N	ENST00000368508	NM_002944.2	2079	Gat/Aat																																																																														
ROS1	0	MSKCC	GRCh37	6	117658501	117658501	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	166	440	1	ENST00000368508.3:c.5082G>A	p.Trp1694Ter	p.W1694*	ENST00000368508	NM_002944.2	1694	tgG/tgA																																																																														
FGFR1	0	MSKCC	GRCh37	8	38275813	38275813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	266	560	0	ENST00000425967.3:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000425967	NM_001174067.1	486	Ccc/Tcc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023949	27023949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	106	153	0	ENST00000324856.7:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000324856	NM_006015.4	352	gGg/gAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445611	49445611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	454	811	0	ENST00000301067.7:c.1855C>T	p.Pro619Ser	p.P619S	ENST00000301067	NM_003482.3	619	Cca/Tca																																																																														
LATS2	0	MSKCC	GRCh37	13	21562531	21562531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	68	77	0	ENST00000382592.4:c.1388C>T	p.Pro463Leu	p.P463L	ENST00000382592	NM_014572.2	463	cCc/cTc																																																																														
PALB2	0	MSKCC	GRCh37	16	23649275	23649275	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	177	285	0	ENST00000261584.4:c.109-2A>G		p.X37_splice	ENST00000261584	NM_024675.3	37																																																																															
PDGFRB	0	MSKCC	GRCh37	5	149506164	149506164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	283	482	0	ENST00000261799.4:c.1593G>C	p.Lys531Asn	p.K531N	ENST00000261799	NM_002609.3	531	aaG/aaC																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32190580	32190580	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	277	545	1	ENST00000375023.3:c.159T>G	p.Cys53Trp	p.C53W	ENST00000375023	NM_004557.3	53	tgT/tgG																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38148059	38148059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	344	599	0	ENST00000317025.8:c.3052C>T	p.Pro1018Ser	p.P1018S	ENST00000317025	NM_023034.1	1018	Cct/Tct																																																																														
PTEN	0	MSKCC	GRCh37	10	89692859	89692859	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	19	164	0	ENST00000371953.3:c.343del	p.Asp115MetfsTer19	p.D115Mfs*19	ENST00000371953	NM_000314.4	115	Gat/at																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061192	38061192	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	32	367	0	ENST00000250448.2:c.797T>A	p.Phe266Tyr	p.F266Y	ENST00000250448	NM_004496.3	266	tTc/tAc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	166	440	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
PARP1	0	MSKCC	GRCh37	1	226578316	226578316	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs193238922		P-0027273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	49	354	0	ENST00000366794.5:c.412C>T	p.Arg138Cys	p.R138C	ENST00000366794	NM_001618.3	138	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	151	526	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0027274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	249	690	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ETV6	0	MSKCC	GRCh37	12	11992154	11992154	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs202244621		P-0027274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	291	532	0	ENST00000396373.4:c.244A>G	p.Ile82Val	p.I82V	ENST00000396373	NM_001987.4	82	Att/Gtt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244282	5244282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	48	721	0	ENST00000357368.4:c.1200C>G	p.Ile400Met	p.I400M	ENST00000357368	NM_002850.3	400	atC/atG																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0027276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	11	93	0	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																														
SMO	0	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0027276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	10	40	0	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	70	370	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	180	456	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
NTRK1	0	MSKCC	GRCh37	1	156845901	156845901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	174	667	1	ENST00000524377.1:c.1531G>A	p.Val511Met	p.V511M	ENST00000524377	NM_002529.3	511	Gtg/Atg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	26	237	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																														
PREX2	0	MSKCC	GRCh37	8	69000005	69000005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	160	496	1	ENST00000288368.4:c.2074C>T	p.Arg692Trp	p.R692W	ENST00000288368	NM_024870.2	692	Cgg/Tgg																																																																														
MEF2B	0	MSKCC	GRCh37	19	19260103	19260103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	79	596	1	ENST00000162023.5:c.190C>T	p.Arg64Cys	p.R64C	ENST00000162023		64	Cgt/Tgt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266853	41266853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	86	275	1	ENST00000349496.5:c.524T>A	p.Val175Asp	p.V175D	ENST00000349496	NM_001904.3	175	gTc/gAc																																																																														
SOX2	0	MSKCC	GRCh37	3	181430234	181430234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	67	293	0	ENST00000325404.1:c.86C>T	p.Ala29Val	p.A29V	ENST00000325404	NM_003106.3	29	gCg/gTg																																																																														
APC	0	MSKCC	GRCh37	5	112175615	112175615	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	87	329	0	ENST00000257430.4:c.4325delC	p.Pro1442LeufsTer31	p.P1442Lfs*31	ENST00000257430	NM_000038.5	1442	Cct/ct																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	80	425	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	183	569	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873587	151873588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	107	400	0	ENST00000262189.6:c.8950dup	p.Ser2984PhefsTer18	p.S2984Ffs*18	ENST00000262189	NM_170606.2	2984	tct/tTct																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114711269	114711271	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	TTA	TTA	-			P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	133	423	3	ENST00000543371.1:c.284_286del	p.Phe95_Lys96delinsTer	p.F95_K96delins*	ENST00000543371	NM_001198531.1	95	tTTAag/tag																																																																														
EPAS1	0	MSKCC	GRCh37	2	46583310	46583310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	45	279	0	ENST00000263734.3:c.238G>A	p.Glu80Lys	p.E80K	ENST00000263734	NM_001430.4	80	Gaa/Aaa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111736	56111737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	20	58	0	ENST00000399503.3:c.340dup	p.His114ProfsTer50	p.H114Pfs*50	ENST00000399503	NM_005921.1	112	-/C																																																																														
APC	0	MSKCC	GRCh37	5	112175155	112175159	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTA	ATGTA	-			P-0027286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	48	174	0	ENST00000257430.4:c.3866_3870del	p.Cys1289SerfsTer10	p.C1289Sfs*10	ENST00000257430	NM_000038.5	1288	ggATGTAat/ggat																																																																														
HNF1A	0	MSKCC	GRCh37	12	121431408	121431408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	68	531	0	ENST00000257555.6:c.612C>A	p.Phe204Leu	p.F204L	ENST00000257555		204	ttC/ttA																																																																														
EPHA7	0	MSKCC	GRCh37	6	94124442	94124442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	27	446	0	ENST00000369303.4:c.141G>T	p.Trp47Cys	p.W47C	ENST00000369303	NM_004440.3	47	tgG/tgT																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	107	518	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	66	501	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	137	539	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023702	31023702	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	158	540	1	ENST00000375687.4:c.3187C>T	p.Gln1063Ter	p.Q1063*	ENST00000375687	NM_015338.5	1063	Cag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	139	403	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	36	249	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																														
APC	0	MSKCC	GRCh37	5	112174223	112174223	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	61	321	0	ENST00000257430.4:c.2932C>T	p.Gln978Ter	p.Q978*	ENST00000257430	NM_000038.5	978	Caa/Taa																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	61	272	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087513	27087513	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	105	497	0	ENST00000324856.7:c.2090del	p.Pro697ArgfsTer45	p.P697Rfs*45	ENST00000324856	NM_006015.4	696	tCc/tc																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40678619	40678619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	107	469	1	ENST00000249776.8:c.361G>A	p.Asp121Asn	p.D121N	ENST00000249776	NM_033286.3	121	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	646	626	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1961	1778	599	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603038	48603039	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCAGCAGCAGGCGGCTACTGCACAAGC			P-0027033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	87	350	0	ENST00000342988.3:c.1349_1376dup	p.Ala460GlyfsTer43	p.A460Gfs*43	ENST00000342988	NM_005359.5	447	atg/aTGCAGCAGCAGGCGGCTACTGCACAAGCtg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970977	21970978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	372	595	0	ENST00000304494.5:c.380dup	p.Arg128ThrfsTer14	p.R128Tfs*14	ENST00000304494	NM_000077.4	127	gca/gcCa																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970977	21970978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	372	595	0	ENST00000304494.5:c.380dup	p.Arg128ThrfsTer14	p.R128Tfs*14	ENST00000304494	NM_000077.4	127	gca/gcCa																																																																														
TP53	0	MSKCC	GRCh37	17	7578189	7578189	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0027035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	937	583	0	ENST00000269305.4:c.660T>G	p.Tyr220Ter	p.Y220*	ENST00000269305	NM_001126112.2	220	taT/taG																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467464	66467464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	158	335	1	ENST00000273854.3:c.805G>A	p.Asp269Asn	p.D269N	ENST00000273854	NM_004439.5	269	Gat/Aat																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870978	12870978	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	53	384	0	ENST00000228872.4:c.208del	p.Leu70Ter	p.L70*	ENST00000228872	NM_004064.3	69	Ccc/cc																																																																														
TSC2	0	MSKCC	GRCh37	16	2138452	2138452	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	393	570	0	ENST00000219476.3:c.5265C>A	p.Cys1755Ter	p.C1755*	ENST00000219476	NM_000548.3	1755	tgC/tgA																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111881629	111881630	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0027035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	290	589	0	ENST00000393256.3:c.307_308del	p.Arg103GlufsTer8	p.R103Efs*8	ENST00000393256	NM_006538.4	103	AGg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009394-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			163	444	553	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499393	89499393	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009394-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	179	386	0	ENST00000336596.2:c.2563C>T	p.Gln855Ter	p.Q855*	ENST00000336596	NM_005233.5	855	Cag/Tag																																																																														
TET2	0	MSKCC	GRCh37	4	106156781	106156781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009394-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			172	371	425	0	ENST00000380013.4:c.1682A>G	p.Lys561Arg	p.K561R	ENST00000380013	NM_001127208.2	561	aAa/aGa																																																																														
TERT	0	MSKCC	GRCh37	5	1294069	1294069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009394-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			590	272	860	3	ENST00000310581.5:c.932C>T	p.Ser311Leu	p.S311L	ENST00000310581	NM_198253.2	311	tCg/tTg																																																																														
PTPN11	0	MSKCC	GRCh37	12	112884112	112884112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009394-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	223	412	1	ENST00000351677.2:c.47C>T	p.Ala16Val	p.A16V	ENST00000351677	NM_002834.3	16	gCa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	71	473	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CDK8	0	MSKCC	GRCh37	13	26923308	26923308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	51	330	0	ENST00000381527.3:c.304C>T	p.His102Tyr	p.H102Y	ENST00000381527	NM_001260.1	102	Cat/Tat																																																																														
STK11	0	MSKCC	GRCh37	19	1221239	1221240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	122	706	0	ENST00000326873.7:c.762_763insG	p.Phe255ValfsTer11	p.F255Vfs*11	ENST00000326873	NM_000455.4	254	-/G																																																																														
ACVR1	0	MSKCC	GRCh37	2	158636945	158636945	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	168	485	0	ENST00000263640.3:c.235A>T	p.Met79Leu	p.M79L	ENST00000263640	NM_001105.4	79	Atg/Ttg																																																																														
CUL3	0	MSKCC	GRCh37	2	225360642	225360648	+	frameshift_variant	Frame_Shift_Del	DEL	AGTTACT	AGTTACT	-			P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	86	375	0	ENST00000264414.4:c.1743_1749del	p.Val582AlafsTer16	p.V582Afs*16	ENST00000264414	NM_003590.4	581	caAGTAACT/ca																																																																														
SETD2	0	MSKCC	GRCh37	3	47163824	47163824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	59	473	0	ENST00000409792.3:c.2302G>T	p.Val768Leu	p.V768L	ENST00000409792	NM_014159.6	768	Gtg/Ttg																																																																														
KIT	0	MSKCC	GRCh37	4	55569980	55569980	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	62	451	0	ENST00000288135.5:c.847A>T	p.Asn283Tyr	p.N283Y	ENST00000288135	NM_000222.2	283	Aat/Tat																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	97	341	3	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
CTLA4	0	MSKCC	GRCh37	2	204736165	204736166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	58	348	1	ENST00000302823.3:c.529dupT	p.Tyr177LeufsTer2	p.Y177Lfs*2	ENST00000302823	NM_005214.4	174	-/T																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18280081	18280081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	80	167	2	ENST00000222254.8:c.2164G>A	p.Gly722Ser	p.G722S	ENST00000222254	NM_005027.3	722	Ggc/Agc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56494900	56494900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	95	452	3	ENST00000267101.3:c.3257C>T	p.Pro1086Leu	p.P1086L	ENST00000267101	NM_001982.3	1086	cCa/cTa																																																																														
RNF43	0	MSKCC	GRCh37	17	56438145	56438145	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	217	692	4	ENST00000407977.2:c.848A>C	p.Gln283Pro	p.Q283P	ENST00000407977		283	cAg/cCg																																																																														
SOX9	0	MSKCC	GRCh37	17	70120193	70120193	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	71	497	1	ENST00000245479.2:c.1195A>G	p.Thr399Ala	p.T399A	ENST00000245479	NM_000346.3	399	Acg/Gcg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467734	66467734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	17	285	0	ENST00000273854.3:c.535G>T	p.Ala179Ser	p.A179S	ENST00000273854	NM_004439.5	179	Gcc/Tcc																																																																														
NSD1	0	MSKCC	GRCh37	5	176662833	176662833	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	26	331	0	ENST00000439151.2:c.3808G>T	p.Glu1270Ter	p.E1270*	ENST00000439151	NM_022455.4	1270	Gag/Tag																																																																														
SMO	0	MSKCC	GRCh37	7	128845610	128845610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	114	338	0	ENST00000249373.3:c.907C>T	p.Leu303Phe	p.L303F	ENST00000249373	NM_005631.4	303	Ctt/Ttt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49428411	49428411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	83	639	0	ENST00000301067.7:c.10394G>C	p.Gly3465Ala	p.G3465A	ENST00000301067	NM_003482.3	3465	gGa/gCa																																																																														
DICER1	0	MSKCC	GRCh37	14	95562768	95562768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	63	369	0	ENST00000343455.3:c.4489G>T	p.Asp1497Tyr	p.D1497Y	ENST00000343455	NM_177438.2	1497	Gat/Tat																																																																														
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	88	585	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																														
EGFR	0	MSKCC	GRCh37	7	55242442	55242443	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTAAAATTCCCGTCGCTA			P-0026974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	100	504	0	ENST00000275493.2:c.2214_2231dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	gtt/gTTAAAATTCCCGTCGCTAtt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	561	562	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	450	596	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	361	560	0	ENST00000322088.6:c.767C>A	p.Ser256Tyr	p.S256Y	ENST00000322088	NM_014225.5	256	tCc/tAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057955	27057955	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	425	660	1	ENST00000324856.7:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000324856	NM_006015.4	555	Cag/Tag																																																																														
DIS3	0	MSKCC	GRCh37	13	73340190	73340190	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	139	258	0	ENST00000377767.4:c.1890G>C	p.Leu630Phe	p.L630F	ENST00000377767	NM_014953.3	630	ttG/ttC																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0027027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	54	543	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937671	36937671	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	97	627	2	ENST00000361632.4:c.1067G>A	p.Trp356Ter	p.W356*	ENST00000361632		356	tGg/tAg																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651956	36651957	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	49	533	0	ENST00000244741.5:c.79dup	p.Ser27LysfsTer9	p.S27Kfs*9	ENST00000244741	NM_000389.4	26	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0027029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	36	497	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0027029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	20	409	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0027029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	20	409	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	22	635	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0027029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	20	409	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	54	604	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																														
PTEN	0	MSKCC	GRCh37	10	89624275	89624275	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	54	370	1	ENST00000371953.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000371953	NM_000314.4	17	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	83	647	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78420988	78420988	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	52	380	0	ENST00000370768.2:c.1732G>T	p.Gly578Ter	p.G578*	ENST00000370768	NM_003902.3	578	Gga/Tga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713306	30713306	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	32	398	0	ENST00000359013.4:c.706G>T	p.Glu236Ter	p.E236*	ENST00000359013	NM_001024847.2	236	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974726	21975235	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	GCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCA	GCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCA	-			P-0027030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	31	343	0				ENST00000304494	NM_000077.4			1/3																																																																													
CDKN2A	1029	MSKCC	GRCh37	9	21974726	21975235	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	GCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCA	GCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGGACGCCGTGAGCGAGTGCTCGGAGGAGGTGCTATTAACTCCGAGCACTTAGCGAATGTGGCACCCCTGAAGTCGCCCCAGGTTGGGTCTCCCCCGGGGGCACCAGCCGGAAGCAGCCCTCGCCAGAGCCAGCGTTGGCAAGGAAGGAGGACTGGGCTCCTCCCCACCTGCCCCCCACACCGCCCTCCGGCCTCCCTGCTCCCAGCCGCGCTCCCCCGCCTGCCA	-			P-0027030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	31	343	0				ENST00000304494	NM_000077.4			1/3																																																																													
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	22	478	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0027032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	12	417	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11999013	11999013	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0027032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	14	272	0	ENST00000353533.5:c.513+2T>A		p.X171_splice	ENST00000353533	NM_003010.3	171																																																																															
PTEN	0	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	83	336	0	ENST00000371953.3:c.202T>A	p.Tyr68Asn	p.Y68N	ENST00000371953	NM_000314.4	68	Tac/Aac																																																																														
ACVR1	0	MSKCC	GRCh37	2	158634842	158634842	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	74	328	0	ENST00000263640.3:c.344C>G	p.Pro115Arg	p.P115R	ENST00000263640	NM_001105.4	115	cCt/cGt																																																																														
FYN	0	MSKCC	GRCh37	6	112029222	112029222	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0027036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	25	356	0	ENST00000368678.4:c.346del	p.Glu116LysfsTer10	p.E116Kfs*10	ENST00000368678		116	Gaa/aa																																																																														
PMS2	0	MSKCC	GRCh37	7	6038842	6038842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	53	607	0	ENST00000265849.7:c.602G>A	p.Ser201Asn	p.S201N	ENST00000265849	NM_000535.5	201	aGt/aAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579346	7579346	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0027069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	297	653	0	ENST00000269305.4:c.341del	p.Leu114CysfsTer9	p.L114Cfs*9	ENST00000269305	NM_001126112.2	114	tTg/tg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444048	49444059	+	inframe_deletion	In_Frame_Del	DEL	GGGCTGGGGGCG	GGGCTGGGGGCG	-			P-0027069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	205	469	1	ENST00000301067.7:c.3312_3323del	p.Ser1107_Pro1110del	p.S1107_P1110del	ENST00000301067	NM_003482.3	1104	ccCGCCCCCAGCCCt/cct																																																																														
BRCA1	0	MSKCC	GRCh37	17	41258501	41258501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	125	465	0	ENST00000357654.3:c.184C>T	p.Pro62Ser	p.P62S	ENST00000357654	NM_007294.3	62	Cct/Tct																																																																														
VHL	0	MSKCC	GRCh37	3	10183794	10183794	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	173	676	0	ENST00000256474.2:c.264del	p.Trp88CysfsTer71	p.W88Cfs*71	ENST00000256474	NM_000551.3	88	tGg/tg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	30	592	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47044886	47044889	+	frameshift_variant	Frame_Shift_Del	DEL	AGTG	AGTG	-			P-0027071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	50	759	0	ENST00000329236.7:c.1980_1983del	p.Ser660ArgfsTer63	p.S660Rfs*63	ENST00000329236	NM_001204466.1	660	AGTGag/ag																																																																														
RET	0	MSKCC	GRCh37	10	43596014	43596014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	48	610	0	ENST00000355710.3:c.181G>A	p.Glu61Lys	p.E61K	ENST00000355710	NM_020975.4	61	Gag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16255092	16255093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	20	402	0	ENST00000375759.3:c.2363dup	p.Asn788LysfsTer2	p.N788Kfs*2	ENST00000375759	NM_015001.2	786	aca/acAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0027077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	108	639	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PREX2	0	MSKCC	GRCh37	8	69005896	69005896	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	47	504	0	ENST00000288368.4:c.2307A>T	p.Gln769His	p.Q769H	ENST00000288368	NM_024870.2	769	caA/caT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	158	460	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	53	201	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911684	32911687	+	frameshift_variant	Frame_Shift_Del	DEL	AATT	AATT	-			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	91	373	1	ENST00000380152.3:c.3195_3198del	p.Asn1066LeufsTer10	p.N1066Lfs*10	ENST00000380152		1064	tcAATT/tc																																																																														
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	46	190	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																														
MSH3	0	MSKCC	GRCh37	5	79961132	79961132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	99	434	1	ENST00000265081.6:c.529G>A	p.Ala177Thr	p.A177T	ENST00000265081	NM_002439.4	177	Gca/Aca																																																																														
IRS2	0	MSKCC	GRCh37	13	110434890	110434890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	533	893	0	ENST00000375856.3:c.3511C>T	p.Arg1171Cys	p.R1171C	ENST00000375856	NM_003749.2	1171	Cgc/Tgc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821376	72821376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	23	359	0	ENST00000268489.5:c.10799C>T	p.Pro3600Leu	p.P3600L	ENST00000268489	NM_006885.3	3600	cCg/cTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11096024	11096024	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	140	764	0	ENST00000344626.4:c.298T>G	p.Ser100Ala	p.S100A	ENST00000344626	NM_003072.3	100	Tca/Gca																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264794	46264794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	224	389	0	ENST00000371998.3:c.1664A>G	p.Asn555Ser	p.N555S	ENST00000371998		555	aAt/aGt																																																																														
FGFR1	0	MSKCC	GRCh37	8	38272344	38272344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	88	510	0	ENST00000425967.3:c.2023C>T	p.Leu675Phe	p.L675F	ENST00000425967	NM_001174067.1	675	Ctc/Ttc																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	274	525	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
PARK2	0	MSKCC	GRCh37	6	162683680	162683680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	61	440	2	ENST00000366898.1:c.289C>T	p.Arg97Trp	p.R97W	ENST00000366898	NM_004562.2	97	Cgg/Tgg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925700	114925700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	54	511	0	ENST00000543371.1:c.1778C>T	p.Pro593Leu	p.P593L	ENST00000543371	NM_001198531.1	593	cCg/cTg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120812	94120812	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200883289		P-0027079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	54	402	0	ENST00000369303.4:c.239A>G	p.Asn80Ser	p.N80S	ENST00000369303	NM_004440.3	80	aAc/aGc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151947980	151947981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	267	452	0	ENST00000262189.6:c.1692dup	p.Asp565ArgfsTer21	p.D565Rfs*21	ENST00000262189	NM_170606.2	564	-/A																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395158	139395158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	99	743	1	ENST00000277541.6:c.5780C>T	p.Thr1927Met	p.T1927M	ENST00000277541	NM_017617.3	1927	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0027080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	472	670	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870985	12870986	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	215	391	0	ENST00000228872.4:c.215dupG	p.Lys73GlnfsTer52	p.K73Qfs*52	ENST00000228872	NM_004064.3	71	gag/gaGg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	537	674	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																														
MYC	0	MSKCC	GRCh37	8	128750681	128750681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	546	460	0	ENST00000377970.2:c.218C>T	p.Thr73Ile	p.T73I	ENST00000377970	NM_002467.4	73	aCc/aTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106670	27106670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	194	584	0	ENST00000324856.7:c.6281G>T	p.Cys2094Phe	p.C2094F	ENST00000324856	NM_006015.4	2094	tGc/tTc																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185146451	185146452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	247	410	0	ENST00000265026.3:c.84dup	p.Asp29ArgfsTer2	p.D29Rfs*2	ENST00000265026	NM_004721.4	28	caa/cAaa																																																																														
KDR	0	MSKCC	GRCh37	4	55973939	55973939	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	313	554	0	ENST00000263923.4:c.1377T>A	p.Tyr459Ter	p.Y459*	ENST00000263923	NM_002253.2	459	taT/taA																																																																														
TERT	7015	MSKCC	GRCh37	5	1268653	1268653	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775014633		P-0027080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	891	674	1	ENST00000310581.5:c.2564C>T	p.Ala855Val	p.A855V	ENST00000310581	NM_198253.2	855	gCg/gTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486273	8486273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	168	295	0	ENST00000356435.5:c.2544C>A	p.Asp848Glu	p.D848E	ENST00000356435		848	gaC/gaA																																																																														
RNF43	0	MSKCC	GRCh37	17	56448299	56448300	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0027080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	485	622	0	ENST00000407977.2:c.347_348delinsG	p.Pro116ArgfsTer42	p.P116Rfs*42	ENST00000407977		116	cCC/cG																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	392	523	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
TBX3	0	MSKCC	GRCh37	12	115110028	115110028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200821102		P-0027081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	105	737	3	ENST00000257566.3:c.1850C>T	p.Ala617Val	p.A617V	ENST00000257566	NM_016569.3	617	gCg/gTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16259187	16259187	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	81	494	0	ENST00000375759.3:c.6452A>C	p.Glu2151Ala	p.E2151A	ENST00000375759	NM_015001.2	2151	gAa/gCa																																																																														
SPEN	0	MSKCC	GRCh37	1	16265833	16265834	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0027081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	221	561	0	ENST00000375759.3:c.10909_10910delAG	p.His3638ProfsTer7	p.H3638Pfs*7	ENST00000375759	NM_015001.2	3636	GAg/g																																																																														
TET1	0	MSKCC	GRCh37	10	70405514	70405515	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	92	456	0	ENST00000373644.4:c.3029dup	p.Asn1011LysfsTer6	p.N1011Kfs*6	ENST00000373644	NM_030625.2	1010	tca/tCca																																																																														
VEGFA	0	MSKCC	GRCh37	6	43749601	43749756	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCGGACATGTTAGGGGGTGTTGCATGGTGATTTTTTTTCTCTCTCTCTGCTGATGCTCTAGCTTAGATGTCTTTCCTTTTGCCTTTTTGCAGTCCCTGTGGGCCTTGCTCAGAGCGGAGAAAGCATTTGTTTGTACAAGATCCGCAGACGTGTAAA	GCGGACATGTTAGGGGGTGTTGCATGGTGATTTTTTTTCTCTCTCTCTGCTGATGCTCTAGCTTAGATGTCTTTCCTTTTGCCTTTTTGCAGTCCCTGTGGGCCTTGCTCAGAGCGGAGAAAGCATTTGTTTGTACAAGATCCGCAGACGTGTAAA	-			P-0027081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	45	66	0	ENST00000523873.1:c.546-92_609del		p.X182_splice	ENST00000523873		182																																																																															
TP53	0	MSKCC	GRCh37	17	7577520	7577521	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0027082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	145	603	0	ENST00000269305.4:c.760_761insG	p.Ile254SerfsTer10	p.I254Sfs*10	ENST00000269305	NM_001126112.2	254	atc/aGtc																																																																														
TP53	0	MSKCC	GRCh37	17	7579590	7579590	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0027082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	98	467	2	ENST00000269305.4:c.97del	p.Ser33ProfsTer11	p.S33Pfs*11	ENST00000269305	NM_001126112.2	33	Tcc/cc																																																																														
AURKA	0	MSKCC	GRCh37	20	54945618	54945618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	31	322	0	ENST00000312783.6:c.952C>A	p.Leu318Ile	p.L318I	ENST00000312783	NM_198436.1	318	Ctt/Att																																																																														
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0027083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	220	399	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
CSDE1	0	MSKCC	GRCh37	1	115267955	115267955	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0027083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	29	386	0	ENST00000438362.2:c.1779-1G>C		p.X593_splice	ENST00000438362	NM_001242891.1	593																																																																															
CSDE1	0	MSKCC	GRCh37	1	115280598	115280598	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	218	429	1	ENST00000438362.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000438362	NM_001242891.1	145	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	133	455	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	102	621	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0027085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	54	396	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	121	309	1	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	121	309	1	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132542	11132542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	65	717	0	ENST00000344626.4:c.2758G>A	p.Glu920Lys	p.E920K	ENST00000344626	NM_003072.3	920	Gag/Aag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727066	40727066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	55	429	0	ENST00000373198.4:c.3898G>T	p.Ala1300Ser	p.A1300S	ENST00000373198	NM_133170.3	1300	Gcc/Tcc																																																																														
MTOR	0	MSKCC	GRCh37	1	11174416	11174416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	157	563	0	ENST00000361445.4:c.7259C>T	p.Ala2420Val	p.A2420V	ENST00000361445	NM_004958.3	2420	gCc/gTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49418376	49418376	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	38	360	0	ENST00000301067.7:c.16037T>G	p.Leu5346Arg	p.L5346R	ENST00000301067	NM_003482.3	5346	cTc/cGc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680655	88680655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142726068		P-0027086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	65	434	1	ENST00000360948.2:c.602G>A	p.Arg201His	p.R201H	ENST00000360948	NM_001012338.2	201	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	218	543	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
NCOA3	0	MSKCC	GRCh37	20	46281279	46281279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	56	258	0	ENST00000371998.3:c.4076C>T	p.Ser1359Phe	p.S1359F	ENST00000371998		1359	tCc/tTc																																																																														
FAM175A	0	MSKCC	GRCh37	4	84390204	84390204	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201698934		P-0027086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	77	369	0	ENST00000321945.7:c.577C>T	p.Arg193Ter	p.R193*	ENST00000321945	NM_139076.2	193	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0027088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	154	499	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
GLI1	0	MSKCC	GRCh37	12	57865621	57865621	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	122	728	1	ENST00000228682.2:c.3098T>A	p.Val1033Glu	p.V1033E	ENST00000228682	NM_005269.2	1033	gTa/gAa																																																																														
MSI1	0	MSKCC	GRCh37	12	120783979	120783979	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112244011		P-0027089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	138	690	1	ENST00000257552.2:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000257552	NM_002442.3	336	Gcc/Acc																																																																														
NF1	0	MSKCC	GRCh37	17	29592280	29592280	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	153	233	0	ENST00000358273.4:c.4760del	p.Leu1587Ter	p.L1587*	ENST00000358273	NM_001042492.2	1586	gcT/gc																																																																														
NF1	0	MSKCC	GRCh37	17	29652936	29652936	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0027089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	206	378	0	ENST00000358273.4:c.4935del	p.Thr1646ProfsTer52	p.T1646Pfs*52	ENST00000358273	NM_001042492.2	1645	cTt/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	103	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52714711	52714711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	39	517	1	ENST00000322088.6:c.469C>T	p.Arg157Ter	p.R157*	ENST00000322088	NM_014225.5	157	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	60	641	1	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
KMT2D	0	MSKCC	GRCh37	12	49432178	49432179	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0027090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	55	694	1	ENST00000301067.7:c.8960_8961delinsTA	p.Pro2987Leu	p.P2987L	ENST00000301067	NM_003482.3	2987	cCC/cTA																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149504374	149504374	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	96	531	0	ENST00000261799.4:c.1828del	p.Ala610ProfsTer13	p.A610Pfs*13	ENST00000261799	NM_002609.3	610	Gcc/cc																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986707	36986707	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	17	21	0	ENST00000354822.5:c.982C>T	p.Gln328Ter	p.Q328*	ENST00000354822	NM_001079668.2	328	Cag/Tag																																																																														
NCOR1	0	MSKCC	GRCh37	17	16056664	16056664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	117	317	0	ENST00000268712.3:c.778A>G	p.Lys260Glu	p.K260E	ENST00000268712	NM_006311.3	260	Aaa/Gaa																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	105	614	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
FANCA	0	MSKCC	GRCh37	16	89869671	89869671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	81	556	0	ENST00000389301.3:c.788C>T	p.Pro263Leu	p.P263L	ENST00000389301	NM_000135.2	263	cCg/cTg																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88659566	88659566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	50	443	1	ENST00000372037.3:c.349C>T	p.Gln117Ter	p.Q117*	ENST00000372037	NM_004329.2	117	Cag/Tag																																																																														
MGA	0	MSKCC	GRCh37	15	42042454	42042454	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	40	505	0	ENST00000219905.7:c.6649C>T	p.Gln2217Ter	p.Q2217*	ENST00000219905	NM_001164273.1	2217	Caa/Taa																																																																														
MGA	0	MSKCC	GRCh37	15	42058886	42058902	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGAAGCAGAGCAACT	CTGGAAGCAGAGCAACT	-			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	89	295	0	ENST00000219905.7:c.8606_8622del	p.Pro2869LeufsTer4	p.P2869Lfs*4	ENST00000219905	NM_001164273.1	2869	cCTGGAAGCAGAGCAACT/c																																																																														
NF1	0	MSKCC	GRCh37	17	29533390	29533390	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	38	171	0	ENST00000358273.4:c.1392+1G>T		p.X464_splice	ENST00000358273	NM_001042492.2	464																																																																															
ERBB2	0	MSKCC	GRCh37	17	37871573	37871573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	109	715	0	ENST00000269571.5:c.1183G>T	p.Glu395Ter	p.E395*	ENST00000269571		395	Gag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	41420038	41420038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	55	342	3	ENST00000373198.4:c.283C>A	p.Leu95Met	p.L95M	ENST00000373198	NM_133170.3	95	Ctg/Atg																																																																														
TAP2	0	MSKCC	GRCh37	6	32803455	32803455	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148976382		P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	120	665	1	ENST00000374899.4:c.704G>A	p.Arg235His	p.R235H	ENST00000374899	NM_018833.2	235	cGc/cAc																																																																														
LYN	0	MSKCC	GRCh37	8	56864525	56864525	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	46	399	0	ENST00000519728.1:c.488G>C	p.Gly163Ala	p.G163A	ENST00000519728	NM_002350.3	163	gGa/gCa																																																																														
ABL1	0	MSKCC	GRCh37	9	133730389	133730389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	56	421	0	ENST00000318560.5:c.455G>C	p.Arg152Pro	p.R152P	ENST00000318560	NM_005157.4	152	cGt/cCt																																																																														
RBM10	0	MSKCC	GRCh37	X	47028784	47028784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	49	721	2	ENST00000329236.7:c.88C>T	p.Arg30Cys	p.R30C	ENST00000329236	NM_001204466.1	30	Cgc/Tgc																																																																														
RBM10	0	MSKCC	GRCh37	X	47038828	47038828	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	99	702	1	ENST00000329236.7:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000329236	NM_001204466.1	202	Cag/Tag																																																																														
GATA1	0	MSKCC	GRCh37	X	48652476	48652476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	27	720	0	ENST00000376670.3:c.1147C>A	p.Pro383Thr	p.P383T	ENST00000376670	NM_002049.3	383	Cct/Act																																																																														
AR	0	MSKCC	GRCh37	X	66943600	66943600	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	31	496	0	ENST00000374690.3:c.2680G>T	p.Glu894Ter	p.E894*	ENST00000374690	NM_000044.3	894	Gaa/Taa																																																																														
MED12	0	MSKCC	GRCh37	X	70349965	70349965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	36	635	0	ENST00000374080.3:c.3948G>T	p.Gln1316His	p.Q1316H	ENST00000374080		1316	caG/caT																																																																														
STAG2	0	MSKCC	GRCh37	X	123182920	123182921	+	missense_variant	Missense_Mutation	DNP	TA	TA	AG			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	34	290	2	ENST00000218089.9:c.885_886delinsAG	p.His295_Arg296delinsGlnGly	p.H295_R296delinsQG	ENST00000218089	NM_001042749.1	295	caTAga/caAGga																																																																														
FYN	0	MSKCC	GRCh37	6	112015840	112015842	+	missense_variant	Missense_Mutation	ONP	CAT	CAT	AAA			P-0027093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	68	452	0	ENST00000368678.4:c.1099_1101delinsTTT	p.Met367Phe	p.M367F	ENST00000368678		367	ATG/TTT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	90	379	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112174973	112174973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	116	211	1	ENST00000257430.4:c.3682C>T	p.Gln1228Ter	p.Q1228*	ENST00000257430	NM_000038.5	1228	Cag/Tag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911538	32911538	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	83	294	0	ENST00000380152.3:c.3046G>T	p.Glu1016Ter	p.E1016*	ENST00000380152		1016	Gaa/Taa																																																																														
AXIN1	0	MSKCC	GRCh37	16	348077	348077	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	420	605	0	ENST00000262320.3:c.1429C>G	p.Arg477Gly	p.R477G	ENST00000262320	NM_003502.3	477	Cgt/Ggt																																																																														
TP53	0	MSKCC	GRCh37	17	7576860	7576873	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAAATATTCTCC	GTGAAATATTCTCC	-			P-0027098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	110	479	0	ENST00000269305.4:c.973_986del	p.Gly325ProfsTer7	p.G325Pfs*7	ENST00000269305	NM_001126112.2	325	GGAGAATATTTCACc/c																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105703	27105710	+	frameshift_variant	Frame_Shift_Del	DEL	AAACTAGA	AAACTAGA	-			P-0027102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	101	280	0	ENST00000324856.7:c.5315_5322del	p.Lys1772ArgfsTer9	p.K1772Rfs*9	ENST00000324856	NM_006015.4	1772	AAACTAGAa/a																																																																														
CARM1	0	MSKCC	GRCh37	19	11031237	11031237	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	173	592	0	ENST00000327064.4:c.1322T>G	p.Ile441Ser	p.I441S	ENST00000327064	NM_199141.1	441	aTt/aGt																																																																														
MCL1	0	MSKCC	GRCh37	1	150551934	150551934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	181	496	0	ENST00000369026.2:c.73A>G	p.Ser25Gly	p.S25G	ENST00000369026	NM_021960.4	25	Agc/Ggc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63534385	63534386	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0027103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	246	708	1	ENST00000307078.5:c.1135_1136delinsTT	p.Glu379Leu	p.E379L	ENST00000307078	NM_004655.3	379	GAa/TTa																																																																														
INHA	0	MSKCC	GRCh37	2	220440186	220440186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	522	760	0	ENST00000243786.2:c.1039G>C	p.Gly347Arg	p.G347R	ENST00000243786	NM_002191.3	347	Ggt/Cgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0027104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	663	436	0				ENST00000310581	NM_198253.2																																																																																
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	691	574	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18800900	18800900	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	122	401	0	ENST00000266497.5:c.4276C>T	p.Arg1426Ter	p.R1426*	ENST00000266497		1426	Cga/Tga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591086	67591086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	47	295	0	ENST00000274335.5:c.1679A>G	p.Asp560Gly	p.D560G	ENST00000274335		560	gAc/gGc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546559	9546559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	430	362	0	ENST00000353224.5:c.1463G>A	p.Arg488Gln	p.R488Q	ENST00000353224	NM_177990.2	488	cGa/cAa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71947003	71947003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	645	811	1	ENST00000298229.2:c.2852C>T	p.Ala951Val	p.A951V	ENST00000298229	NM_001567.3	951	gCt/gTt																																																																														
TBX3	0	MSKCC	GRCh37	12	115118745	115118745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	297	520	1	ENST00000257566.3:c.596C>T	p.Ser199Phe	p.S199F	ENST00000257566	NM_016569.3	199	tCc/tTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36219688	36219688	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	469	618	0	ENST00000222270.7:c.4585A>G	p.Asn1529Asp	p.N1529D	ENST00000222270	NM_014727.1	1529	Aat/Gat																																																																														
ATR	0	MSKCC	GRCh37	3	142279217	142279218	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0027104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	254	544	2	ENST00000350721.4:c.1428_1429delinsTT	p.Leu477Phe	p.L477F	ENST00000350721	NM_001184.3	476	tcCCtt/tcTTtt																																																																														
TERT	0	MSKCC	GRCh37	5	1294775	1294775	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	454	448	0	ENST00000310581.5:c.226T>G	p.Cys76Gly	p.C76G	ENST00000310581	NM_198253.2	76	Tgc/Ggc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	488	382	0	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971035	21971035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	488	382	0	ENST00000304494.5:c.323A>G	p.Asp108Gly	p.D108G	ENST00000304494	NM_000077.4	108	gAt/gGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0027107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	45	406	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	143	717	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	86	703	1	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
DDR2	0	MSKCC	GRCh37	1	162724541	162724541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	49	578	0	ENST00000367921.3:c.313C>T	p.Arg105Cys	p.R105C	ENST00000367921	NM_006182.2	105	Cgc/Tgc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43784592	43784592	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	71	570	0	ENST00000382044.4:c.82G>C	p.Glu28Gln	p.E28Q	ENST00000382044	NM_001141980.1	28	Gaa/Caa																																																																														
TSC2	0	MSKCC	GRCh37	16	2129620	2129620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	131	819	1	ENST00000219476.3:c.3347C>T	p.Ala1116Val	p.A1116V	ENST00000219476	NM_000548.3	1116	gCt/gTt																																																																														
CASP8	0	MSKCC	GRCh37	2	202136292	202136292	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	75	607	0	ENST00000358485.4:c.536T>C	p.Phe179Ser	p.F179S	ENST00000358485	NM_001080125.1	179	tTt/tCt																																																																														
CASP8	0	MSKCC	GRCh37	2	202149659	202149659	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	45	439	0	ENST00000358485.4:c.1100A>G	p.Asp367Gly	p.D367G	ENST00000358485	NM_001080125.1	367	gAc/gGc																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910708	29910709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0027107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	188	976	0	ENST00000376809.5:c.249_250dup	p.Trp84PhefsTer9	p.W84Ffs*9	ENST00000376809	NM_002116.7	83	tat/taTTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0027108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	323	733	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445269	49445269	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	177	960	1	ENST00000301067.7:c.2197C>T	p.Gln733Ter	p.Q733*	ENST00000301067	NM_003482.3	733	Caa/Taa																																																																														
POLE	0	MSKCC	GRCh37	12	133218803	133218803	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	104	639	1	ENST00000320574.5:c.5133A>T	p.Gln1711His	p.Q1711H	ENST00000320574	NM_006231.2	1711	caA/caT																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	291	617	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087554	27087554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	89	597	0	ENST00000324856.7:c.2128C>T	p.Arg710Cys	p.R710C	ENST00000324856	NM_006015.4	710	Cgc/Tgc																																																																														
ATM	0	MSKCC	GRCh37	11	108121692	108121692	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	42	498	0	ENST00000278616.4:c.1500A>G	p.Ile500Met	p.I500M	ENST00000278616	NM_000051.3	500	atA/atG																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431633	49431633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	46	575	1	ENST00000301067.7:c.9506G>T	p.Gly3169Val	p.G3169V	ENST00000301067	NM_003482.3	3169	gGc/gTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187541829	187541829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	52	381	0	ENST00000441802.2:c.5911G>C	p.Glu1971Gln	p.E1971Q	ENST00000441802	NM_005245.3	1971	Gaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	140	360	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0027112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	164	454	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226443	2226443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	261	595	1	ENST00000398665.3:c.3923C>T	p.Pro1308Leu	p.P1308L	ENST00000398665	NM_032482.2	1308	cCg/cTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40899066	40899066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199994862		P-0027112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	181	504	0	ENST00000373198.4:c.2204C>T	p.Pro735Leu	p.P735L	ENST00000373198	NM_133170.3	735	cCg/cTg																																																																														
PDCD1	0	MSKCC	GRCh37	2	242795109	242795109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	218	594	0	ENST00000334409.5:c.100C>A	p.Pro34Thr	p.P34T	ENST00000334409	NM_005018.2	34	Ccc/Acc																																																																														
PGR	0	MSKCC	GRCh37	11	100998186	100998186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	123	416	0	ENST00000325455.5:c.1616C>T	p.Pro539Leu	p.P539L	ENST00000325455	NM_001202474.3	539	cCg/cTg																																																																														
ELF3	0	MSKCC	GRCh37	1	201984345	201984348	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0027112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	167	510	2	ENST00000359651.3:c.1012_1015del	p.Lys338GlyfsTer108	p.K338Gfs*108	ENST00000359651		337	tACAAa/ta																																																																														
ARID2	0	MSKCC	GRCh37	12	46245376	46245376	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	174	387	0	ENST00000334344.6:c.3470C>A	p.Ser1157Ter	p.S1157*	ENST00000334344	NM_152641.2	1157	tCa/tAa																																																																														
CTCF	0	MSKCC	GRCh37	16	67645147	67645148	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0027112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	204	479	1	ENST00000264010.4:c.413dup	p.Tyr138Ter	p.Y138*	ENST00000264010	NM_006565.3	138	tat/tAat																																																																														
RNF43	0	MSKCC	GRCh37	17	56434942	56434943	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0027112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	373	475	0	ENST00000407977.2:c.2193_2194dup	p.Arg732LeufsTer96	p.R732Lfs*96	ENST00000407977		732	cgc/cTCgc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713520	30713537	+	inframe_deletion	In_Frame_Del	DEL	AGGAGTATGCCTCTTGGA	AGGAGTATGCCTCTTGGA	-			P-0027112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	122	392	0	ENST00000359013.4:c.922_939del	p.Glu308_Lys313del	p.E308_K313del	ENST00000359013	NM_001024847.2	307	gAGGAGTATGCCTCTTGGAag/gag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8507414	8507414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	97	235	0	ENST00000356435.5:c.1564T>C	p.Phe522Leu	p.F522L	ENST00000356435		522	Ttc/Ctc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587780066		P-0027113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	131	584	0	ENST00000269305.4:c.328del	p.Arg110ValfsTer13	p.R110Vfs*13	ENST00000269305	NM_001126112.2	110	Cgt/gt																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	51	226	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0027113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	107	272	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	107	520	0	ENST00000269305.4:c.518T>C	p.Val173Ala	p.V173A	ENST00000269305	NM_001126112.2	173	gTg/gCg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63534431	63534431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	53	581	1	ENST00000307078.5:c.1090C>T	p.Pro364Ser	p.P364S	ENST00000307078	NM_004655.3	364	Ccc/Tcc																																																																														
JAK3	0	MSKCC	GRCh37	19	17943447	17943447	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	99	611	0	ENST00000458235.1:c.2561T>A	p.Val854Glu	p.V854E	ENST00000458235	NM_000215.3	854	gTg/gAg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	169	487	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																														
BAP1	0	MSKCC	GRCh37	3	52442570	52442570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	212	413	0	ENST00000460680.1:c.175C>T	p.Arg59Trp	p.R59W	ENST00000460680	NM_004656.3	59	Cgg/Tgg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115723	8115724	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGAAGGAAGGCATCC			P-0027115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	49	365	0	ENST00000346208.3:c.1073_1087dup	p.Lys358_Gln362dup	p.K358_Q362dup	ENST00000346208		358	aag/aAGAAGGAAGGCATCCag																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032205	26032205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	175	254	0	ENST00000244661.2:c.84G>C	p.Lys28Asn	p.K28N	ENST00000244661	NM_003537.3	28	aaG/aaC																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356149	66356149	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs142589245		P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	231	550	0	ENST00000273854.3:c.1348T>G	p.Leu450Val	p.L450V	ENST00000273854	NM_004439.5	450	Ttg/Gtg																																																																														
TCF3	0	MSKCC	GRCh37	19	1619834	1619834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	336	784	1	ENST00000344749.5:c.1112G>A	p.Arg371Gln	p.R371Q	ENST00000344749	NM_001136139.2	371	cGa/cAa																																																																														
IGF2	0	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	149	620	0	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954022	32954023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1305653361		P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	215	531	7	ENST00000380152.3:c.9097dup	p.Thr3033AsnfsTer11	p.T3033Nfs*11	ENST00000380152		3030	aca/acAa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36208923	36208925	+	start_lost,inframe_deletion	Translation_Start_Site	DEL	GGC	GGC	-			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	12	38	0	ENST00000222270.7:c.14_16del	p.Ala5del	p.A5del	ENST00000222270	NM_014727.1	1	atGGCg/atg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373422	118373422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	269	405	0	ENST00000534358.1:c.6815C>T	p.Thr2272Ile	p.T2272I	ENST00000534358	NM_005933.3	2272	aCa/aTa																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43738590	43738605	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTTGAACTGCAAAG	AGGTTGAACTGCAAAG	-			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	149	481	0	ENST00000382044.4:c.3020_3035del	p.Ser1007TrpfsTer30	p.S1007Wfs*30	ENST00000382044	NM_001141980.1	1007	tCTTTGCAGTTCAACCTg/tg																																																																														
IDH2	0	MSKCC	GRCh37	15	90634823	90634823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	150	649	0	ENST00000330062.3:c.169G>A	p.Glu57Lys	p.E57K	ENST00000330062	NM_002168.2	57	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7572949	7572961	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTTGAACATGA	GTCTTGAACATGA	-			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	218	622	1	ENST00000269305.4:c.1148_1160del	p.Leu383GlnfsTer35	p.L383Qfs*35	ENST00000269305	NM_001126112.2	383	cTCATGTTCAAGACa/ca																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244957	41244957	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	154	628	0	ENST00000357654.3:c.2591C>G	p.Ser864Ter	p.S864*	ENST00000357654	NM_007294.3	864	tCa/tGa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11100015	11100015	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	281	680	0	ENST00000344626.4:c.1141C>G	p.Arg381Gly	p.R381G	ENST00000344626	NM_003072.3	381	Cga/Gga																																																																														
INHA	0	MSKCC	GRCh37	2	220439994	220439994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	329	896	2	ENST00000243786.2:c.847C>A	p.Pro283Thr	p.P283T	ENST00000243786	NM_002191.3	283	Cct/Act																																																																														
ARID1B	0	MSKCC	GRCh37	6	157511330	157511330	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	156	346	0	ENST00000346085.5:c.3848G>T	p.Gly1283Val	p.G1283V	ENST00000346085	NM_020732.3	1283	gGg/gTg																																																																														
PREX2	0	MSKCC	GRCh37	8	68934344	68934344	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	298	780	0	ENST00000288368.4:c.410A>C	p.Asn137Thr	p.N137T	ENST00000288368	NM_024870.2	137	aAc/aCc																																																																														
MED12	0	MSKCC	GRCh37	X	70349059	70349059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	240	265	0	ENST00000374080.3:c.3571G>C	p.Asp1191His	p.D1191H	ENST00000374080		1191	Gat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	212	534	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0027126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	207	450	0				ENST00000310581	NM_198253.2																																																																																
APC	0	MSKCC	GRCh37	5	112175770	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0027126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	244	344	0	ENST00000257430.4:c.4480delG	p.Glu1494LysfsTer13	p.E1494Kfs*13	ENST00000257430	NM_000038.5	1493	acG/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0027126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	391	862	1	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
PREX2	0	MSKCC	GRCh37	8	69058476	69058476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	176	624	1	ENST00000288368.4:c.4120C>T	p.Arg1374Trp	p.R1374W	ENST00000288368	NM_024870.2	1374	Cgg/Tgg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118352612	118352612	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	148	586	0	ENST00000534358.1:c.3817G>C	p.Glu1273Gln	p.E1273Q	ENST00000534358	NM_005933.3	1273	Gaa/Caa																																																																														
MGA	0	MSKCC	GRCh37	15	42052646	42052646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	185	586	0	ENST00000219905.7:c.7317G>A	p.Met2439Ile	p.M2439I	ENST00000219905	NM_001164273.1	2439	atG/atA																																																																														
CRKL	0	MSKCC	GRCh37	22	21272334	21272334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	142	715	0	ENST00000354336.3:c.112G>A	p.Val38Ile	p.V38I	ENST00000354336	NM_005207.3	38	Gtc/Atc																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045880	26045887	+	frameshift_variant	Frame_Shift_Del	DEL	CCGACCTG	CCGACCTG	-			P-0027126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	95	635	0	ENST00000540144.1:c.243_250del	p.Asp82PhefsTer14	p.D82Ffs*14	ENST00000540144	NM_003531.2	81	aCCGACCTG/a																																																																														
LATS1	0	MSKCC	GRCh37	6	149997831	149997831	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	218	665	0	ENST00000253339.5:c.2636G>A	p.Trp879Ter	p.W879*	ENST00000253339		879	tGg/tAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	26	763	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0027127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	70	714	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
MYCN	0	MSKCC	GRCh37	2	16085659	16085659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	52	816	0	ENST00000281043.3:c.835G>A	p.Val279Met	p.V279M	ENST00000281043	NM_005378.4	279	Gtg/Atg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0027131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	219	754	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55221822	55221822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149840192		P-0027131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	73	809	0	ENST00000275493.2:c.866C>T	p.Ala289Val	p.A289V	ENST00000275493	NM_005228.3	289	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0027131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	83	652	0	ENST00000269305.4:c.716_718dup	p.Asn239dup	p.N239dup	ENST00000269305	NM_001126112.2	239	agt/aACAgt																																																																														
MTOR	0	MSKCC	GRCh37	1	11182158	11182158	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0027131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	157	743	0	ENST00000361445.4:c.6688T>G	p.Leu2230Val	p.L2230V	ENST00000361445	NM_004958.3	2230	Tta/Gta																																																																														
RB1	0	MSKCC	GRCh37	13	48954301	48954301	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	51	389	0	ENST00000267163.4:c.1422C>A	p.Ser474Arg	p.S474R	ENST00000267163	NM_000321.2	474	agC/agA																																																																														
RBM10	0	MSKCC	GRCh37	X	47045017	47045032	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGCTCCACAAGGTA	AGGGCTCCACAAGGTA	-			P-0027131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	145	849	0	ENST00000329236.7:c.2110_2121+4del		p.X704_splice	ENST00000329236	NM_001204466.1	704																																																																															
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	119	512	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	200	714	0	ENST00000269305.4:c.731G>C	p.Gly244Ala	p.G244A	ENST00000269305	NM_001126112.2	244	gGc/gCc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	507	521	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	83	712	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																														
TP53	0	MSKCC	GRCh37	17	7579503	7579503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	156	751	0	ENST00000269305.4:c.184G>T	p.Glu62Ter	p.E62*	ENST00000269305	NM_001126112.2	62	Gaa/Taa																																																																														
RFWD2	0	MSKCC	GRCh37	1	176132113	176132113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	117	576	0	ENST00000367669.3:c.654G>T	p.Arg218Ser	p.R218S	ENST00000367669	NM_022457.5	218	agG/agT																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612901	228612901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	69	572	0	ENST00000366696.1:c.126C>A	p.Tyr42Ter	p.Y42*	ENST00000366696	NM_003493.2	42	taC/taA																																																																														
MGA	0	MSKCC	GRCh37	15	41988331	41988331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	179	614	0	ENST00000219905.7:c.1123G>T	p.Gly375Ter	p.G375*	ENST00000219905	NM_001164273.1	375	Gga/Tga																																																																														
JAK3	0	MSKCC	GRCh37	19	17953224	17953224	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	149	749	0	ENST00000458235.1:c.762C>A	p.Phe254Leu	p.F254L	ENST00000458235	NM_000215.3	254	ttC/ttA																																																																														
PAK7	0	MSKCC	GRCh37	20	9523322	9523323	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	135	493	0	ENST00000353224.5:c.1914_1915delinsAT	p.Asp638_Gly639delinsGluCys	p.D638_G639delinsEC	ENST00000353224	NM_177990.2	638	gaTGgc/gaATgc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546795	9546795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	97	325	1	ENST00000353224.5:c.1227C>A	p.Ser409Arg	p.S409R	ENST00000353224	NM_177990.2	409	agC/agA																																																																														
ATR	0	MSKCC	GRCh37	3	142183977	142183977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	152	590	0	ENST00000350721.4:c.7003G>C	p.Asp2335His	p.D2335H	ENST00000350721	NM_001184.3	2335	Gat/Cat																																																																														
ATR	0	MSKCC	GRCh37	3	142183992	142183992	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	147	607	0	ENST00000350721.4:c.6988G>C	p.Asp2330His	p.D2330H	ENST00000350721	NM_001184.3	2330	Gat/Cat																																																																														
SMO	0	MSKCC	GRCh37	7	128845998	128845998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	137	498	0	ENST00000249373.3:c.928G>A	p.Glu310Lys	p.E310K	ENST00000249373	NM_005631.4	310	Gag/Aag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187246	38187246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	196	706	0	ENST00000317025.8:c.1231G>T	p.Ala411Ser	p.A411S	ENST00000317025	NM_023034.1	411	Gcc/Tcc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53227763	53227763	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	105	689	2	ENST00000375401.3:c.2425A>G	p.Ser809Gly	p.S809G	ENST00000375401	NM_004187.3	809	Agt/Ggt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7982814	7982814	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	171	865	0	ENST00000319144.4:c.971T>A	p.Ile324Asn	p.I324N	ENST00000319144	NM_001139.2	324	aTc/aAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187549880	187549880	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	84	510	0	ENST00000441802.2:c.4361C>G	p.Pro1454Arg	p.P1454R	ENST00000441802	NM_005245.3	1454	cCt/cGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151876974	151876974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	84	481	1	ENST00000262189.6:c.7387C>T	p.Arg2463Cys	p.R2463C	ENST00000262189	NM_170606.2	2463	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0027137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	184	473	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
FGF4	0	MSKCC	GRCh37	11	69588231	69588231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	253	468	1	ENST00000168712.1:c.467C>T	p.Thr156Met	p.T156M	ENST00000168712	NM_002007.2	156	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578549	7578550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGTACTGTA			P-0027137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	413	889	0	ENST00000269305.4:c.376-5_380dup	p.Pro128ThrfsTer24	p.P128Tfs*24	ENST00000269305	NM_001126112.2	127	tcc/tcTACAGTACTCc																																																																														
EZH1	0	MSKCC	GRCh37	17	40857171	40857171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	247	426	0	ENST00000428826.2:c.1870G>A	p.Gly624Arg	p.G624R	ENST00000428826		624	Gga/Aga																																																																														
APC	0	MSKCC	GRCh37	5	112175211	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	TAAAAG	TAAAAG	AAAAA			P-0027137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	53	248	0	ENST00000257430.4:c.3920_3925delinsAAAAA	p.Ile1307LysfsTer14	p.I1307Kfs*14	ENST00000257430	NM_000038.5	1307	aTAAAAGaa/aAAAAAaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	412	525	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	323	694	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
KMT2A	0	MSKCC	GRCh37	11	118363821	118363821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	298	585	1	ENST00000534358.1:c.5054C>A	p.Ser1685Tyr	p.S1685Y	ENST00000534358	NM_005933.3	1685	tCc/tAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593415	48593415	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	243	430	0	ENST00000342988.3:c.1166T>A	p.Leu389Ter	p.L389*	ENST00000342988	NM_005359.5	389	tTg/tAg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	369	434	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	369	434	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	369	434	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577088	7577088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	660	656	0	ENST00000269305.4:c.850A>C	p.Thr284Pro	p.T284P	ENST00000269305	NM_001126112.2	284	Aca/Cca																																																																														
ELF3	0	MSKCC	GRCh37	1	201981174	201981215	+	inframe_deletion	In_Frame_Del	DEL	TACGACGCAAGCGCCATTGACTTCTCACGATGTGACATGGAT	TACGACGCAAGCGCCATTGACTTCTCACGATGTGACATGGAT	-			P-0027141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	466	767	0	ENST00000359651.3:c.253_294del	p.Tyr85_Asp98del	p.Y85_D98del	ENST00000359651		85	TACGACGCAAGCGCCATTGACTTCTCACGATGTGACATGGAT/-																																																																														
IL10	0	MSKCC	GRCh37	1	206944257	206944257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	339	360	0	ENST00000423557.1:c.373C>T	p.Arg125Cys	p.R125C	ENST00000423557	NM_000572.2	125	Cgc/Tgc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30046500	30046500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	217	511	1	ENST00000331968.5:c.2683C>T	p.Pro895Ser	p.P895S	ENST00000331968	NM_002742.2	895	Cct/Tct																																																																														
DICER1	0	MSKCC	GRCh37	14	95562821	95562821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	296	362	0	ENST00000343455.3:c.4436A>G	p.Tyr1479Cys	p.Y1479C	ENST00000343455	NM_177438.2	1479	tAt/tGt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274232	10274232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	146	314	1	ENST00000330684.3:c.37C>A	p.Pro13Thr	p.P13T	ENST00000330684	NM_001134407.1	13	Ccg/Acg																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	546	535	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732349	74732349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	380	338	0	ENST00000359995.5:c.560C>T	p.Ser187Phe	p.S187F	ENST00000359995	NM_001195427.1	187	tCt/tTt																																																																														
ALK	0	MSKCC	GRCh37	2	29940480	29940480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	334	483	0	ENST00000389048.3:c.751G>C	p.Asp251His	p.D251H	ENST00000389048	NM_004304.4	251	Gac/Cac																																																																														
EPHA5	0	MSKCC	GRCh37	4	66230832	66230832	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	165	401	0	ENST00000273854.3:c.2139T>A	p.Tyr713Ter	p.Y713*	ENST00000273854	NM_004439.5	713	taT/taA																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858437	27858437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	177	322	1	ENST00000359303.2:c.134G>A	p.Gly45Asp	p.G45D	ENST00000359303	NM_003535.2	45	gGc/gAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500808	8500808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	421	410	0	ENST00000356435.5:c.2074G>C	p.Asp692His	p.D692H	ENST00000356435		692	Gat/Cat																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740560	145740571	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTGCCCAGGG	TCCTGCCCAGGG	C			P-0027145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	281	655	0	ENST00000428558.2:c.1446_1457delinsG	p.Pro483AlafsTer53	p.P483Afs*53	ENST00000428558	NM_004260.3	482	cgCCCTGGGCAGGAg/cgGg																																																																														
SPEN	0	MSKCC	GRCh37	1	16235946	16235946	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	167	514	0	ENST00000375759.3:c.1012A>T	p.Lys338Ter	p.K338*	ENST00000375759	NM_015001.2	338	Aag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094365	27094374	+	frameshift_variant	Frame_Shift_Del	DEL	GACCGTTATC	GACCGTTATC	-			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	211	551	0	ENST00000324856.7:c.3073_3082del	p.Asp1025TrpfsTer11	p.D1025Wfs*11	ENST00000324856	NM_006015.4	1025	GACCGTTATCtg/tg																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51436112	51436112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	130	451	0	ENST00000262662.1:c.72G>T	p.Leu24Phe	p.L24F	ENST00000262662		24	ttG/ttT																																																																														
MEN1	0	MSKCC	GRCh37	11	64572576	64572576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	227	654	1	ENST00000337652.1:c.1295G>T	p.Ser432Ile	p.S432I	ENST00000337652	NM_130803.2	432	aGt/aTt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478847	56478847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	93	697	1	ENST00000267101.3:c.303C>A	p.Asn101Lys	p.N101K	ENST00000267101	NM_001982.3	101	aaC/aaA																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514441	103514441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	53	236	0	ENST00000355739.4:c.942G>T	p.Met314Ile	p.M314I	ENST00000355739	NM_000123.3	314	atG/atT																																																																														
IGF1R	0	MSKCC	GRCh37	15	99250927	99250927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	172	513	1	ENST00000268035.6:c.231G>T	p.Lys77Asn	p.K77N	ENST00000268035	NM_000875.3	77	aaG/aaT																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351788	89351788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	75	815	0	ENST00000301030.4:c.1162G>T	p.Val388Phe	p.V388F	ENST00000301030	NM_001256183.1	388	Gtt/Ttt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7990651	7990651	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	242	668	0	ENST00000319144.4:c.110T>A	p.Leu37Gln	p.L37Q	ENST00000319144	NM_001139.2	37	cTg/cAg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42843834	42843834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	75	607	0	ENST00000398585.3:c.1085G>A	p.Gly362Glu	p.G362E	ENST00000398585	NM_001135099.1	362	gGa/gAa																																																																														
PREX2	0	MSKCC	GRCh37	8	68956747	68956747	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	169	606	0	ENST00000288368.4:c.865A>T	p.Thr289Ser	p.T289S	ENST00000288368	NM_024870.2	289	Aca/Tca																																																																														
TSC1	0	MSKCC	GRCh37	9	135798803	135798803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	105	390	0	ENST00000298552.3:c.440G>T	p.Gly147Val	p.G147V	ENST00000298552	NM_001162426.1	147	gGg/gTg																																																																														
ATRX	0	MSKCC	GRCh37	X	76909636	76909636	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	94	270	0	ENST00000373344.5:c.4269del	p.Arg1425GlyfsTer65	p.R1425Gfs*65	ENST00000373344	NM_000489.3	1423	aaG/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7576900	7576901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	176	613	0	ENST00000269305.4:c.945dup	p.Pro316SerfsTer21	p.P316Sfs*21	ENST00000269305	NM_001126112.2	315	-/T																																																																														
BRD4	0	MSKCC	GRCh37	19	15376382	15376382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1490	142	953	0	ENST00000263377.2:c.632C>G	p.Pro211Arg	p.P211R	ENST00000263377	NM_058243.2	211	cCt/cGt																																																																														
MYCN	0	MSKCC	GRCh37	2	16085978	16085978	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	185	539	0	ENST00000281043.3:c.1154A>G	p.Asn385Ser	p.N385S	ENST00000281043	NM_005378.4	385	aAc/aGc																																																																														
PARK2	0	MSKCC	GRCh37	6	162394431	162394431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	47	388	1	ENST00000366898.1:c.637G>T	p.Gly213Ter	p.G213*	ENST00000366898	NM_004562.2	213	Gga/Tga																																																																														
AMER1	0	MSKCC	GRCh37	X	63411327	63411327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	77	608	1	ENST00000330258.3:c.1840C>A	p.His614Asn	p.H614N	ENST00000330258	NM_152424.3	614	Cac/Aac																																																																														
FAT1	0	MSKCC	GRCh37	4	187532912	187532914	+	missense_variant	Missense_Mutation	ONP	AAA	AAA	TAC			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	35	379	0	ENST00000441802.2:c.9479_9481delinsGTA	p.Ile3160_Leu3161delinsSerIle	p.I3160_L3161delinsSI	ENST00000441802	NM_005245.3	3160	aTTTta/aGTAta																																																																														
MDM4	0	MSKCC	GRCh37	1	204512017	204512018	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	A			P-0027153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	63	408	0	ENST00000367182.3:c.617_618delinsA	p.Leu206Ter	p.L206*	ENST00000367182	NM_001278516.1	206	tTG/tA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0027154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	181	453	0				ENST00000310581	NM_198253.2																																																																																
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0027154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	194	488	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915952	127915952	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	359	571	1	ENST00000373547.4:c.529C>T	p.Arg177Ter	p.R177*	ENST00000373547	NM_002721.4	177	Cga/Tga																																																																														
PTPRT	0	MSKCC	GRCh37	20	41420093	41420093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	68	340	0	ENST00000373198.4:c.228G>A	p.Met76Ile	p.M76I	ENST00000373198	NM_133170.3	76	atG/atA																																																																														
B2M	0	MSKCC	GRCh37	15	45007806	45007807	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0027154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	114	521	0	ENST00000558401.1:c.253_254del	p.Leu85ValfsTer4	p.L85Vfs*4	ENST00000558401	NM_004048.2	85	TTg/g																																																																														
PREX2	0	MSKCC	GRCh37	8	68864663	68864663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	74	263	0	ENST00000288368.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000288368	NM_024870.2	12	Gag/Aag																																																																														
ATM	0	MSKCC	GRCh37	11	108139148	108139148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	154	498	1	ENST00000278616.4:c.2650C>T	p.Pro884Ser	p.P884S	ENST00000278616	NM_000051.3	884	Cct/Tct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420079	49420079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	168	629	1	ENST00000301067.7:c.15670C>T	p.Arg5224Cys	p.R5224C	ENST00000301067	NM_003482.3	5224	Cgt/Tgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431892	49431892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	236	846	0	ENST00000301067.7:c.9247G>A	p.Glu3083Lys	p.E3083K	ENST00000301067	NM_003482.3	3083	Gag/Aag																																																																														
LATS2	0	MSKCC	GRCh37	13	21557701	21557701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	209	697	0	ENST00000382592.4:c.2144C>T	p.Ala715Val	p.A715V	ENST00000382592	NM_014572.2	715	gCc/gTc																																																																														
TET2	0	MSKCC	GRCh37	4	106155659	106155659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	134	416	0	ENST00000380013.4:c.560G>A	p.Gly187Glu	p.G187E	ENST00000380013	NM_001127208.2	187	gGg/gAg																																																																														
RRAS	0	MSKCC	GRCh37	19	50140118	50140118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	459	788	1	ENST00000246792.3:c.307G>A	p.Gly103Ser	p.G103S	ENST00000246792	NM_006270.3	103	Ggc/Agc																																																																														
BAP1	0	MSKCC	GRCh37	3	52440896	52440906	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCACTCCTC	GTCCACTCCTC	-			P-0027156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	334	763	0	ENST00000460680.1:c.598_608del	p.Glu200ArgfsTer39	p.E200Rfs*39	ENST00000460680	NM_004656.3	200	GAGGAGTGGACa/a																																																																														
PBRM1	0	MSKCC	GRCh37	3	52623266	52623266	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	170	311	0	ENST00000394830.3:c.2785G>T	p.Glu929Ter	p.E929*	ENST00000394830	NM_018313.4	929	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0027157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	42	512	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0027157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	34	435	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
TP63	0	MSKCC	GRCh37	3	189526152	189526152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	92	656	0	ENST00000264731.3:c.416C>T	p.Ala139Val	p.A139V	ENST00000264731	NM_003722.4	139	gCg/gTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425533	49425533	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0027157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	33	957	1	ENST00000301067.7:c.12955A>T	p.Arg4319Ter	p.R4319*	ENST00000301067	NM_003482.3	4319	Aga/Tga																																																																														
SMAD3	0	MSKCC	GRCh37	15	67477073	67477073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	26	442	0	ENST00000327367.4:c.880G>A	p.Val294Met	p.V294M	ENST00000327367	NM_005902.3	294	Gtg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	143	669	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22006009	22006009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	36	797	0	ENST00000276925.6:c.394C>A	p.Leu132Met	p.L132M	ENST00000276925	NM_004936.3	132	Ctg/Atg																																																																														
BAP1	0	MSKCC	GRCh37	3	52441431	52441431	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0027161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	105	557	0	ENST00000460680.1:c.421C>G	p.His141Asp	p.H141D	ENST00000460680	NM_004656.3	141	Cat/Gat																																																																														
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	313	433	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
ATM	0	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	121	222	0	ENST00000278616.4:c.8432dupA	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	632	671	2	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
PTPN11	0	MSKCC	GRCh37	12	112888165	112888165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	327	760	0	ENST00000351677.2:c.181G>T	p.Asp61Tyr	p.D61Y	ENST00000351677	NM_002834.3	61	Gat/Tat																																																																														
SETD2	0	MSKCC	GRCh37	3	47163707	47163707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	202	414	0	ENST00000409792.3:c.2419T>C	p.Ser807Pro	p.S807P	ENST00000409792	NM_014159.6	807	Tct/Cct																																																																														
RASA1	0	MSKCC	GRCh37	5	86627296	86627296	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	161	346	0	ENST00000274376.6:c.671T>C	p.Met224Thr	p.M224T	ENST00000274376	NM_002890.2	224	aTg/aCg																																																																														
CDK12	0	MSKCC	GRCh37	17	37618689	37618690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0027165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	105	576	1	ENST00000447079.4:c.366dup	p.Leu123ThrfsTer4	p.L123Tfs*4	ENST00000447079	NM_015083.1	122	tta/ttAa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911617	134911617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	37	482	0	ENST00000398015.3:c.2082G>T	p.Met694Ile	p.M694I	ENST00000398015	NM_004441.4	694	atG/atT																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	22	148	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	22	148	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
STAT5B	0	MSKCC	GRCh37	17	40375510	40375510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	37	491	0	ENST00000293328.3:c.440C>T	p.Thr147Met	p.T147M	ENST00000293328	NM_012448.3	147	aCg/aTg																																																																														
RBM10	0	MSKCC	GRCh37	X	47044550	47044550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	21	138	0	ENST00000329236.7:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000329236	NM_001204466.1	605	Gag/Tag																																																																														
MED12	0	MSKCC	GRCh37	X	70347822	70347822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	101	227	0	ENST00000374080.3:c.3061T>C	p.Phe1021Leu	p.F1021L	ENST00000374080		1021	Ttc/Ctc																																																																														
TP53	0	MSKCC	GRCh37	17	7576890	7576890	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	197	201	0	ENST00000269305.4:c.956delA	p.Lys319ArgfsTer26	p.K319Rfs*26	ENST00000269305	NM_001126112.2	319	aAg/ag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	53	327	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	48	134	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	59	314	2	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																														
CIC	0	MSKCC	GRCh37	19	42793238	42793238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	71	434	1	ENST00000575354.2:c.1130C>T	p.Thr377Met	p.T377M	ENST00000575354	NM_015125.3	377	aCg/aTg																																																																														
STK40	0	MSKCC	GRCh37	1	36820836	36820836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	52	259	0	ENST00000373129.3:c.541G>A	p.Val181Met	p.V181M	ENST00000373129	NM_032017.1	181	Gtg/Atg																																																																														
REL	0	MSKCC	GRCh37	2	61118821	61118821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146326268		P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	80	254	0	ENST00000295025.8:c.14C>T	p.Ala5Val	p.A5V	ENST00000295025	NM_002908.2	5	gCg/gTg																																																																														
INHA	0	MSKCC	GRCh37	2	220437230	220437230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	96	568	1	ENST00000243786.2:c.134C>T	p.Ala45Val	p.A45V	ENST00000243786	NM_002191.3	45	gCg/gTg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52613132	52613132	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	79	456	0	ENST00000394830.3:c.3396G>A	p.Trp1132Ter	p.W1132*	ENST00000394830	NM_018313.4	1132	tgG/tgA																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178947821	178947821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	80	427	1	ENST00000263967.3:c.2696G>A	p.Arg899His	p.R899H	ENST00000263967	NM_006218.2	899	cGt/cAt																																																																														
FLT4	0	MSKCC	GRCh37	5	180048788	180048788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	63	457	0	ENST00000261937.6:c.1774C>T	p.Arg592Cys	p.R592C	ENST00000261937	NM_182925.4	592	Cgc/Tgc																																																																														
MDC1	0	MSKCC	GRCh37	6	30670332	30670332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	61	451	0	ENST00000376406.3:c.6100A>C	p.Lys2034Gln	p.K2034Q	ENST00000376406	NM_014641.2	2034	Aag/Cag																																																																														
ROS1	0	MSKCC	GRCh37	6	117725519	117725519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	82	359	0	ENST00000368508.3:c.362C>A	p.Ser121Tyr	p.S121Y	ENST00000368508	NM_002944.2	121	tCt/tAt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157502175	157502175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	72	305	0	ENST00000346085.5:c.3208A>G	p.Lys1070Glu	p.K1070E	ENST00000346085	NM_020732.3	1070	Aag/Gag																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64132836	64132836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	82	522	0	ENST00000334205.4:c.970T>C	p.Ser324Pro	p.S324P	ENST00000334205	NM_003942.2	324	Tca/Cca																																																																														
MLL2	0	MSKCC	GRCh37	12	49434358	49434358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	58	437	2	ENST00000301067.7:c.7195C>T	p.Pro2399Ser	p.P2399S	ENST00000301067	NM_003482.3	2399	Ccc/Tcc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81969884	81969884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840870		P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	70	656	2	ENST00000359376.3:c.2953G>A	p.Val985Ile	p.V985I	ENST00000359376	NM_002661.3	985	Gtc/Atc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098591	11098591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	66	412	0	ENST00000344626.4:c.1109G>A	p.Arg370His	p.R370H	ENST00000344626	NM_003072.3	370	cGc/cAc																																																																														
NF2	0	MSKCC	GRCh37	22	30067900	30067900	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	72	534	0	ENST00000338641.4:c.1085A>G	p.Gln362Arg	p.Q362R	ENST00000338641	NM_000268.3	362	cAg/cGg																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157505443	157505443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	80	360	0	ENST00000346085.5:c.3428del	p.Lys1143SerfsTer68	p.K1143Sfs*68	ENST00000346085	NM_020732.3	1142	Aaa/aa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32931924	32931924	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	65	433	0	ENST00000380152.3:c.7667delA	p.Asn2556MetfsTer92	p.N2556Mfs*92	ENST00000380152		2555	Aaa/aa																																																																														
TSC2	0	MSKCC	GRCh37	16	2127638	2127639	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	53	439	0	ENST00000219476.3:c.2880_2881delTC	p.Pro961ThrfsTer23	p.P961Tfs*23	ENST00000219476	NM_000548.3	959	aaCTct/aact																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	68	297	2	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	22	127	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	22	127	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257366	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0005500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	47	398	0	ENST00000162023.5:c.767delC	p.Pro256GlnfsTer?	p.P256Qfs*?	ENST00000162023		256	cCa/ca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	63	321	1				ENST00000310581	NM_198253.2																																																																																
FAT1	0	MSKCC	GRCh37	4	187584663	187584663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	246	669	0	ENST00000441802.2:c.3370G>A	p.Glu1124Lys	p.E1124K	ENST00000441802	NM_005245.3	1124	Gag/Aag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	494	310	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974792	21974792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	148	202	0	ENST00000304494.5:c.35C>T	p.Ser12Leu	p.S12L	ENST00000304494	NM_000077.4	12	tCg/tTg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974792	21974792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	148	202	0	ENST00000304494.5:c.35C>T	p.Ser12Leu	p.S12L	ENST00000304494	NM_000077.4	12	tCg/tTg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482552	56482552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	421	479	0	ENST00000267101.3:c.1009G>A	p.Gly337Arg	p.G337R	ENST00000267101	NM_001982.3	337	Ggg/Agg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023697	27023697	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	296	459	0	ENST00000324856.7:c.803A>G	p.Gln268Arg	p.Q268R	ENST00000324856	NM_006015.4	268	cAg/cGg																																																																														
CASP8	0	MSKCC	GRCh37	2	202131228	202131228	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	116	437	0	ENST00000358485.4:c.196C>G	p.Leu66Val	p.L66V	ENST00000358485	NM_001080125.1	66	Ctt/Gtt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212543809	212543809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	173	423	0	ENST00000342788.4:c.1590G>C	p.Arg530Ser	p.R530S	ENST00000342788	NM_005235.2	530	agG/agC																																																																														
INHA	0	MSKCC	GRCh37	2	220439667	220439667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	368	711	0	ENST00000243786.2:c.520C>T	p.Pro174Ser	p.P174S	ENST00000243786	NM_002191.3	174	Cct/Tct																																																																														
MST1	0	MSKCC	GRCh37	3	49723624	49723624	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	115	175	0	ENST00000449682.2:c.1018G>A	p.Asp340Asn	p.D340N	ENST00000449682	NM_020998.3	340	Gac/Aac																																																																														
ATR	0	MSKCC	GRCh37	3	142185319	142185319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	273	306	0	ENST00000350721.4:c.6744G>T	p.Lys2248Asn	p.K2248N	ENST00000350721	NM_001184.3	2248	aaG/aaT																																																																														
TP63	0	MSKCC	GRCh37	3	189526125	189526125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	453	490	0	ENST00000264731.3:c.389C>T	p.Ser130Phe	p.S130F	ENST00000264731	NM_003722.4	130	tCc/tTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187584693	187584693	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	434	662	2	ENST00000441802.2:c.3340C>T	p.Gln1114Ter	p.Q1114*	ENST00000441802	NM_005245.3	1114	Cag/Tag																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527481	157527481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	519	758	0	ENST00000346085.5:c.5206G>A	p.Glu1736Lys	p.E1736K	ENST00000346085	NM_020732.3	1736	Gaa/Aaa																																																																														
MYC	0	MSKCC	GRCh37	8	128750831	128750831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	402	552	0	ENST00000377970.2:c.368G>A	p.Gly123Glu	p.G123E	ENST00000377970	NM_002467.4	123	gGa/gAa																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915883	127915883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	182	679	1	ENST00000373547.4:c.598G>A	p.Glu200Lys	p.E200K	ENST00000373547	NM_002721.4	200	Gaa/Aaa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710610	114710610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	721	736	1	ENST00000543371.1:c.95C>T	p.Ser32Phe	p.S32F	ENST00000543371	NM_001198531.1	32	tCc/tTc																																																																														
ATM	0	MSKCC	GRCh37	11	108160489	108160489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	442	459	0	ENST00000278616.4:c.4397G>C	p.Arg1466Pro	p.R1466P	ENST00000278616	NM_000051.3	1466	cGa/cCa																																																																														
ATM	0	MSKCC	GRCh37	11	108202753	108202753	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	197	438	0	ENST00000278616.4:c.7777C>T	p.Gln2593Ter	p.Q2593*	ENST00000278616	NM_000051.3	2593	Cag/Tag																																																																														
ARID2	0	MSKCC	GRCh37	12	46242635	46242635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	106	251	0	ENST00000334344.6:c.1597G>A	p.Glu533Lys	p.E533K	ENST00000334344	NM_152641.2	533	Gaa/Aaa																																																																														
MLL2	0	MSKCC	GRCh37	12	49444483	49444483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	111	424	1	ENST00000301067.7:c.2888C>T	p.Ala963Val	p.A963V	ENST00000301067	NM_003482.3	963	gCc/gTc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060822	38060822	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	357	697	0	ENST00000250448.2:c.1167A>T	p.Lys389Asn	p.K389N	ENST00000250448	NM_004496.3	389	aaA/aaT																																																																														
IDH2	0	MSKCC	GRCh37	15	90628554	90628554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	99	378	0	ENST00000330062.3:c.1033G>A	p.Glu345Lys	p.E345K	ENST00000330062	NM_002168.2	345	Gag/Aag																																																																														
PDPK1	0	MSKCC	GRCh37	16	2636720	2636720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	99	425	0	ENST00000342085.4:c.1169C>T	p.Ser390Leu	p.S390L	ENST00000342085	NM_002613.4	390	tCg/tTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3843447	3843447	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	198	467	1	ENST00000262367.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000262367	NM_004380.2	386	Cga/Tga																																																																														
RARA	5914	MSKCC	GRCh37	17	38511611	38511611	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs899025600		P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	194	560	1	ENST00000254066.5:c.1109G>A	p.Arg370His	p.R370H	ENST00000254066	NM_000964.3	370	cGc/cAc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45856343	45856343	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	118	575	0	ENST00000391945.4:c.1829T>A	p.Phe610Tyr	p.F610Y	ENST00000391945	NM_000400.3	610	tTt/tAt																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20150336	20150336	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	450	240	0	ENST00000379607.5:c.301A>G	p.Arg101Gly	p.R101G	ENST00000379607	NM_001412.3	101	Aga/Gga																																																																														
BTK	0	MSKCC	GRCh37	X	100611047	100611047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	367	354	0	ENST00000308731.7:c.1559G>A	p.Arg520Gln	p.R520Q	ENST00000308731	NM_000061.2	520	cGa/cAa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247247	153247267	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCTCCACTAACAACCCTCC	ATGCTCCACTAACAACCCTCC	T			P-0006190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	163	503	0	ENST00000281708.4:c.1535_1555delinsA	p.Arg512LysfsTer2	p.R512Kfs*2	ENST00000281708	NM_033632.3	512	aGGAGGGTTGTTAGTGGAGCATat/aAat																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	101	208	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	101	208	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
SPEN	0	MSKCC	GRCh37	1	16254656	16254656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	119	596	0	ENST00000375759.3:c.1921A>G	p.Thr641Ala	p.T641A	ENST00000375759	NM_015001.2	641	Act/Gct																																																																														
BCL6	0	MSKCC	GRCh37	3	187447305	187447305	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	42	238	0	ENST00000232014.4:c.888T>A	p.Cys296Ter	p.C296*	ENST00000232014	NM_001130845.1	296	tgT/tgA																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356299	66356299	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	66	358	0	ENST00000273854.3:c.1198T>C	p.Ser400Pro	p.S400P	ENST00000273854	NM_004439.5	400	Tcc/Ccc																																																																														
PMS2	0	MSKCC	GRCh37	7	6048627	6048627	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	128	370	0	ENST00000265849.7:c.23+1G>T		p.X8_splice	ENST00000265849	NM_000535.5	8																																																																															
FOXO1	0	MSKCC	GRCh37	13	41133804	41133804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	222	694	0	ENST00000379561.5:c.1824G>C	p.Glu608Asp	p.E608D	ENST00000379561	NM_002015.3	608	gaG/gaC																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032356	10032356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	34	180	0	ENST00000330684.3:c.467C>T	p.Thr156Met	p.T156M	ENST00000330684	NM_001134407.1	156	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	116	329	0	ENST00000269305.4:c.489C>A	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taA																																																																														
BRIP1	0	MSKCC	GRCh37	17	59878735	59878735	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	92	476	0	ENST00000259008.2:c.1019T>G	p.Leu340Arg	p.L340R	ENST00000259008	NM_032043.2	340	cTt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	376	412	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
BCL6	0	MSKCC	GRCh37	3	187446324	187446324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	78	266	0	ENST00000232014.4:c.1364C>T	p.Thr455Met	p.T455M	ENST00000232014	NM_001130845.1	455	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27059176	27059176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	164	649	1	ENST00000324856.7:c.1813C>T	p.Gln605Ter	p.Q605*	ENST00000324856	NM_006015.4	605	Caa/Taa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098954	178098954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	246	431	0	ENST00000397062.3:c.91G>A	p.Gly31Arg	p.G31R	ENST00000397062	NM_006164.4	31	Gga/Aga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057860	27057860	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	190	678	0	ENST00000324856.7:c.1568C>G	p.Ser523Cys	p.S523C	ENST00000324856	NM_006015.4	523	tCc/tGc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99163121	99163121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	136	526	1	ENST00000074304.5:c.1127G>T	p.Arg376Leu	p.R376L	ENST00000074304	NM_001134224.1	376	cGc/cTc																																																																														
SETD2	0	MSKCC	GRCh37	3	47164320	47164320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	133	504	0	ENST00000409792.3:c.1806G>C	p.Met602Ile	p.M602I	ENST00000409792	NM_014159.6	602	atG/atC																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934923	9934923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	115	526	0	ENST00000330684.3:c.1367G>A	p.Cys456Tyr	p.C456Y	ENST00000330684	NM_001134407.1	456	tGc/tAc																																																																														
SOCS1	0	MSKCC	GRCh37	16	11348800	11348800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	115	164	0	ENST00000332029.2:c.536G>T	p.Arg179Leu	p.R179L	ENST00000332029	NM_003745.1	179	cGc/cTc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974748	21974748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	392	294	0	ENST00000304494.5:c.79del	p.Glu27ArgfsTer26	p.E27Rfs*26	ENST00000304494	NM_000077.4	27	Gag/ag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974748	21974748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	392	294	0	ENST00000304494.5:c.79del	p.Glu27ArgfsTer26	p.E27Rfs*26	ENST00000304494	NM_000077.4	27	Gag/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	151	393	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21994138	21994138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	194	517	0	ENST00000361570.3:c.316G>A	p.Gly106Ser	p.G106S	ENST00000361570	NM_058195.3	106	Ggt/Agt																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21994138	21994138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	194	517	0	ENST00000361570.3:c.316G>A	p.Gly106Ser	p.G106S	ENST00000361570	NM_058195.3	106	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7578286	7578286	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	186	434	0	ENST00000269305.4:c.563T>A	p.Leu188Gln	p.L188Q	ENST00000269305	NM_001126112.2	188	cTg/cAg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	340	279	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	340	279	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	340	279	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
TP53	0	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	809	668	1	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																														
MLL2	0	MSKCC	GRCh37	12	49425644	49425644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	565	551	1	ENST00000301067.7:c.12844C>T	p.Arg4282Ter	p.R4282*	ENST00000301067	NM_003482.3	4282	Cga/Tga																																																																														
AKT3	0	MSKCC	GRCh37	1	243716082	243716082	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	284	557	0	ENST00000263826.5:c.1112C>A	p.Ser371Ter	p.S371*	ENST00000263826	NM_005465.4	371	tCa/tAa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212488678	212488678	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	291	504	0	ENST00000342788.4:c.2171T>A	p.Leu724His	p.L724H	ENST00000342788	NM_005235.2	724	cTt/cAt																																																																														
BARD1	0	MSKCC	GRCh37	2	215610446	215610446	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	255	474	0	ENST00000260947.4:c.1810G>A	p.Val604Ile	p.V604I	ENST00000260947	NM_000465.2	604	Gta/Ata																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138375112	138375112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	203	345	0	ENST00000289153.2:c.2947C>G	p.Arg983Gly	p.R983G	ENST00000289153	NM_006219.2	983	Cgc/Ggc																																																																														
ROS1	0	MSKCC	GRCh37	6	117730753	117730753	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	371	756	0	ENST00000368508.3:c.281A>C	p.Glu94Ala	p.E94A	ENST00000368508	NM_002944.2	94	gAa/gCa																																																																														
ARID2	0	MSKCC	GRCh37	12	46244406	46244406	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	351	534	1	ENST00000334344.6:c.2500C>T	p.Gln834Ter	p.Q834*	ENST00000334344	NM_152641.2	834	Caa/Taa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15289947	15289947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	382	602	0	ENST00000263388.2:c.3607G>A	p.Glu1203Lys	p.E1203K	ENST00000263388	NM_000435.2	1203	Gag/Aag																																																																														
MLL2	0	MSKCC	GRCh37	12	49421039	49421039	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	74	477	0	ENST00000301067.7:c.14710C>T	p.Arg4904Ter	p.R4904*	ENST00000301067	NM_003482.3	4904	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	17	402	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	104	432	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	73	465	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	27	483	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
AR	0	MSKCC	GRCh37	X	66931247	66931247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	79	316	0	ENST00000374690.3:c.1889G>A	p.Arg630Gln	p.R630Q	ENST00000374690	NM_000044.3	630	cGg/cAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	82	440	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1289	103	683	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ETV1	0	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	73	479	1	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2222281	2222281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	126	686	0	ENST00000326181.6:c.565C>T	p.Arg189Trp	p.R189W	ENST00000326181	NM_032271.2	189	Cgg/Tgg																																																																														
PTEN	0	MSKCC	GRCh37	10	89717629	89717629	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	81	448	0	ENST00000371953.3:c.654C>A	p.Cys218Ter	p.C218*	ENST00000371953	NM_000314.4	218	tgC/tgA																																																																														
TSC2	0	MSKCC	GRCh37	16	2131719	2131719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1317	120	720	3	ENST00000219476.3:c.3734G>A	p.Arg1245Gln	p.R1245Q	ENST00000219476	NM_000548.3	1245	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	33	185	1	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																																																														
FLT1	0	MSKCC	GRCh37	13	28877407	28877407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	71	439	1	ENST00000282397.4:c.3914G>A	p.Arg1305His	p.R1305H	ENST00000282397	NM_002019.4	1305	cGc/cAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187542861	187542861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	75	379	0	ENST00000441802.2:c.4879C>T	p.Arg1627Ter	p.R1627*	ENST00000441802	NM_005245.3	1627	Cga/Tga																																																																														
DDR2	0	MSKCC	GRCh37	1	162746131	162746131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	47	274	0	ENST00000367921.3:c.2254C>T	p.Arg752Cys	p.R752C	ENST00000367921	NM_006182.2	752	Cgc/Tgc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178947119	178947119	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199943173		P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	109	379	1	ENST00000263967.3:c.2555G>A	p.Arg852Gln	p.R852Q	ENST00000263967	NM_006218.2	852	cGa/cAa																																																																														
KIT	0	MSKCC	GRCh37	4	55599359	55599359	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	80	407	0	ENST00000288135.5:c.2484+1G>A		p.X828_splice	ENST00000288135	NM_000222.2	828																																																																															
KDM5C	0	MSKCC	GRCh37	X	53247103	53247103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	114	565	2	ENST00000375401.3:c.397C>T	p.Arg133Trp	p.R133W	ENST00000375401	NM_004187.3	133	Cgg/Tgg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	78	385	1	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225657	26225657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202067024		P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	80	366	1	ENST00000360408.1:c.275C>T	p.Ala92Val	p.A92V	ENST00000360408	NM_003532.2	92	gCg/gTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099056	27099056	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	108	612	2	ENST00000324856.7:c.3472G>T	p.Gly1158Ter	p.G1158*	ENST00000324856	NM_006015.4	1158	Gga/Tga																																																																														
SMYD3	0	MSKCC	GRCh37	1	246078900	246078900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	102	501	0	ENST00000388985.4:c.745C>T	p.Arg249Cys	p.R249C	ENST00000388985		249	Cgc/Tgc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17742864	17742864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	94	669	0	ENST00000250003.3:c.772C>T	p.Arg258Cys	p.R258C	ENST00000250003	NM_002478.4	258	Cgc/Tgc																																																																														
CCND1	0	MSKCC	GRCh37	11	69466022	69466022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	112	718	1	ENST00000227507.2:c.860C>A	p.Pro287His	p.P287H	ENST00000227507	NM_053056.2	287	cCc/cAc																																																																														
ATM	0	MSKCC	GRCh37	11	108203579	108203579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	76	338	0	ENST00000278616.4:c.7879T>C	p.Tyr2627His	p.Y2627H	ENST00000278616	NM_000051.3	2627	Tat/Cat																																																																														
ATM	0	MSKCC	GRCh37	11	108206648	108206648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	98	464	0	ENST00000278616.4:c.8228C>T	p.Thr2743Met	p.T2743M	ENST00000278616	NM_000051.3	2743	aCg/aTg																																																																														
MLL	0	MSKCC	GRCh37	11	118360531	118360531	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	124	535	1	ENST00000534358.1:c.4504C>T	p.Arg1502Ter	p.R1502*	ENST00000534358	NM_005933.3	1502	Cga/Tga																																																																														
MLL2	0	MSKCC	GRCh37	12	49445862	49445862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1560	164	1039	1	ENST00000301067.7:c.1604C>A	p.Pro535His	p.P535H	ENST00000301067	NM_003482.3	535	cCt/cAt																																																																														
AURKB	0	MSKCC	GRCh37	17	8108338	8108338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	101	749	1	ENST00000585124.1:c.886G>A	p.Val296Met	p.V296M	ENST00000585124	NM_004217.3	296	Gtg/Atg																																																																														
AURKB	0	MSKCC	GRCh37	17	8110941	8110941	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	97	580	0	ENST00000585124.1:c.154G>A	p.Ala52Thr	p.A52T	ENST00000585124	NM_004217.3	52	Gcc/Acc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226881	2226881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	56	278	1	ENST00000398665.3:c.4361C>T	p.Ala1454Val	p.A1454V	ENST00000398665	NM_032482.2	1454	gCg/gTg																																																																														
GNA11	0	MSKCC	GRCh37	19	3110171	3110171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	87	490	0	ENST00000078429.4:c.161C>T	p.Thr54Met	p.T54M	ENST00000078429	NM_002067.2	54	aCg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1381	132	892	4	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																														
CIC	0	MSKCC	GRCh37	19	42794925	42794925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	112	544	2	ENST00000575354.2:c.2005G>A	p.Ala669Thr	p.A669T	ENST00000575354	NM_015125.3	669	Gcc/Acc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45858977	45858977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199738290		P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	112	593	0	ENST00000391945.4:c.1489C>T	p.Arg497Cys	p.R497C	ENST00000391945	NM_000400.3	497	Cgt/Tgt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25497884	25497884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	88	515	0	ENST00000264709.3:c.565A>G	p.Thr189Ala	p.T189A	ENST00000264709	NM_175629.2	189	Acc/Gcc																																																																														
ALK	0	MSKCC	GRCh37	2	29420414	29420414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	112	493	0	ENST00000389048.3:c.4067G>T	p.Gly1356Val	p.G1356V	ENST00000389048	NM_004304.4	1356	gGg/gTg																																																																														
ACVR1	0	MSKCC	GRCh37	2	158622517	158622517	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	104	528	0	ENST00000263640.3:c.982G>T	p.Gly328Trp	p.G328W	ENST00000263640	NM_001105.4	328	Ggg/Tgg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41400185	41400185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	78	551	0	ENST00000373198.4:c.574G>A	p.Ala192Thr	p.A192T	ENST00000373198	NM_133170.3	192	Gca/Aca																																																																														
EP300	0	MSKCC	GRCh37	22	41573810	41573810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1331	155	769	0	ENST00000263253.7:c.6095G>A	p.Gly2032Glu	p.G2032E	ENST00000263253	NM_001429.3	2032	gGa/gAa																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138478130	138478130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148660928		P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	91	571	0	ENST00000289153.2:c.56C>T	p.Ala19Val	p.A19V	ENST00000289153	NM_006219.2	19	gCg/gTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	72	364	0	ENST00000263967.3:c.1031T>C	p.Val344Ala	p.V344A	ENST00000263967	NM_006218.2	344	gTg/gCg																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502852	186502853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	78	549	0	ENST00000323963.5:c.311dup	p.Leu105ThrfsTer40	p.L105Tfs*40	ENST00000323963		104	gca/gCca																																																																														
FAT1	0	MSKCC	GRCh37	4	187629420	187629420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	124	665	2	ENST00000441802.2:c.1562C>T	p.Thr521Met	p.T521M	ENST00000441802	NM_005245.3	521	aCg/aTg																																																																														
TERT	0	MSKCC	GRCh37	5	1253890	1253890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	72	612	3	ENST00000310581.5:c.3352G>A	p.Ala1118Thr	p.A1118T	ENST00000310581	NM_198253.2	1118	Gca/Aca																																																																														
DROSHA	0	MSKCC	GRCh37	5	31410919	31410919	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	152	656	0	ENST00000344624.3:c.3601A>G	p.Ile1201Val	p.I1201V	ENST00000344624		1201	Ata/Gta																																																																														
TAP2	0	MSKCC	GRCh37	6	32803483	32803483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1399	132	852	0	ENST00000374899.4:c.676C>T	p.Arg226Trp	p.R226W	ENST00000374899	NM_018833.2	226	Cgg/Tgg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453127	140453127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	98	497	0	ENST00000288602.6:c.1808G>T	p.Arg603Leu	p.R603L	ENST00000288602	NM_004333.4	603	cGa/cTa																																																																														
GNAQ	0	MSKCC	GRCh37	9	80336306	80336306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	91	391	1	ENST00000286548.4:c.1013G>A	p.Arg338His	p.R338H	ENST00000286548	NM_002072.3	338	cGc/cAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402714	139402714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1274	99	699	1	ENST00000277541.6:c.3295G>A	p.Val1099Met	p.V1099M	ENST00000277541	NM_017617.3	1099	Gtg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	262	897	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212285243	212285243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	92	772	1	ENST00000342788.4:c.3058G>A	p.Glu1020Lys	p.E1020K	ENST00000342788	NM_005235.2	1020	Gag/Aag																																																																														
BLM	0	MSKCC	GRCh37	15	91293295	91293295	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	61	397	0	ENST00000355112.3:c.797G>C	p.Arg266Thr	p.R266T	ENST00000355112	NM_000057.2	266	aGa/aCa																																																																														
IRS1	0	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	37	467	0	ENST00000305123.5:c.109G>C	p.Glu37Gln	p.E37Q	ENST00000305123	NM_005544.2	37	Gag/Cag																																																																														
RAD54L	0	MSKCC	GRCh37	1	46738417	46738417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	189	790	0	ENST00000371975.4:c.1318G>T	p.Gly440Cys	p.G440C	ENST00000371975	NM_003579.3	440	Ggc/Tgc																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439671	51439671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	74	508	0	ENST00000262662.1:c.236G>T	p.Arg79Ile	p.R79I	ENST00000262662		79	aGa/aTa																																																																														
JUN	0	MSKCC	GRCh37	1	59248366	59248366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	75	288	0	ENST00000371222.2:c.377C>T	p.Thr126Met	p.T126M	ENST00000371222	NM_002228.3	126	aCg/aTg																																																																														
JAK1	0	MSKCC	GRCh37	1	65349065	65349065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	102	706	0	ENST00000342505.4:c.100C>T	p.Pro34Ser	p.P34S	ENST00000342505	NM_002227.2	34	Cca/Tca																																																																														
DDR2	0	MSKCC	GRCh37	1	162741901	162741901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	157	575	0	ENST00000367921.3:c.1592G>A	p.Gly531Glu	p.G531E	ENST00000367921	NM_006182.2	531	gGa/gAa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94169032	94169032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	175	598	1	ENST00000323929.3:c.1960G>T	p.Asp654Tyr	p.D654Y	ENST00000323929	NM_005591.3	654	Gac/Tac																																																																														
PGR	0	MSKCC	GRCh37	11	100998841	100998841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	91	899	0	ENST00000325455.5:c.961C>G	p.Arg321Gly	p.R321G	ENST00000325455	NM_001202474.3	321	Cgg/Ggg																																																																														
YAP1	0	MSKCC	GRCh37	11	101981889	101981889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	128	1005	0	ENST00000282441.5:c.310C>G	p.His104Asp	p.H104D	ENST00000282441	NM_001130145.2	104	Cac/Gac																																																																														
ATM	0	MSKCC	GRCh37	11	108196122	108196122	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	155	812	1	ENST00000278616.4:c.6658C>G	p.Gln2220Glu	p.Q2220E	ENST00000278616	NM_000051.3	2220	Cag/Gag																																																																														
KDM5A	0	MSKCC	GRCh37	12	461416	461416	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	124	768	0	ENST00000399788.2:c.1104G>C	p.Glu368Asp	p.E368D	ENST00000399788	NM_001042603.1	368	gaG/gaC																																																																														
KMT2D	0	MSKCC	GRCh37	12	49437211	49437211	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	97	767	0	ENST00000301067.7:c.5468G>C	p.Gly1823Ala	p.G1823A	ENST00000301067	NM_003482.3	1823	gGa/gCa																																																																														
PTPN11	0	MSKCC	GRCh37	12	112910751	112910751	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	109	765	0	ENST00000351677.2:c.760C>G	p.Leu254Val	p.L254V	ENST00000351677	NM_002834.3	254	Cta/Gta																																																																														
FLT3	0	MSKCC	GRCh37	13	28601288	28601288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	303	840	2	ENST00000241453.7:c.2144C>A	p.Thr715Lys	p.T715K	ENST00000241453	NM_004119.2	715	aCa/aAa																																																																														
IRS2	0	MSKCC	GRCh37	13	110437616	110437616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	104	883	0	ENST00000375856.3:c.785C>G	p.Ser262Trp	p.S262W	ENST00000375856	NM_003749.2	262	tCg/tGg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472658	88472659	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	66	406	0	ENST00000360948.2:c.1896_1897delTGinsAT	p.HisGly632GlnTrp	p.HG632QW	ENST00000360948	NM_001012338.2	632	caTGgg/caATgg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680742	88680742	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	127	848	0	ENST00000360948.2:c.515A>T	p.Gln172Leu	p.Q172L	ENST00000360948	NM_001012338.2	172	cAg/cTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779388	3779388	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	67	658	0	ENST00000262367.5:c.5660C>A	p.Ser1887Ter	p.S1887*	ENST00000262367	NM_004380.2	1887	tCa/tAa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81892769	81892769	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	86	624	0	ENST00000359376.3:c.479+1G>T		p.X160_splice	ENST00000359376	NM_002661.3	160																																																																															
PLCG2	0	MSKCC	GRCh37	16	81922868	81922868	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	91	515	1	ENST00000359376.3:c.857T>G	p.Phe286Cys	p.F286C	ENST00000359376	NM_002661.3	286	tTt/tGt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81925180	81925180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	113	645	0	ENST00000359376.3:c.971C>G	p.Ser324Cys	p.S324C	ENST00000359376	NM_002661.3	324	tCc/tGc																																																																														
RAD51C	0	MSKCC	GRCh37	17	56787224	56787224	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	151	705	0	ENST00000337432.4:c.710G>T	p.Arg237Leu	p.R237L	ENST00000337432	NM_058216.2	237	cGa/cTa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5240284	5240284	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	178	980	0	ENST00000357368.4:c.1630T>C	p.Ser544Pro	p.S544P	ENST00000357368	NM_002850.3	544	Tcc/Ccc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5274221	5274221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	240	918	0	ENST00000357368.4:c.226C>G	p.Gln76Glu	p.Q76E	ENST00000357368	NM_002850.3	76	Cag/Gag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212164	36212164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	60	538	0	ENST00000222270.7:c.1915A>G	p.Thr639Ala	p.T639A	ENST00000222270	NM_014727.1	639	Acc/Gcc																																																																														
MYCN	0	MSKCC	GRCh37	2	16085894	16085894	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	67	722	0	ENST00000281043.3:c.1070G>C	p.Arg357Pro	p.R357P	ENST00000281043	NM_005378.4	357	cGt/cCt																																																																														
ALK	0	MSKCC	GRCh37	2	29448368	29448368	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	176	1021	2	ENST00000389048.3:c.3131T>A	p.Leu1044His	p.L1044H	ENST00000389048	NM_004304.4	1044	cTc/cAc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46609582	46609582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	107	948	0	ENST00000263734.3:c.2306C>G	p.Pro769Arg	p.P769R	ENST00000263734	NM_001430.4	769	cCc/cGc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99169382	99169382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	82	573	0	ENST00000074304.5:c.1312G>T	p.Asp438Tyr	p.D438Y	ENST00000074304	NM_001134224.1	438	Gac/Tac																																																																														
ACVR1	0	MSKCC	GRCh37	2	158634777	158634777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	61	619	0	ENST00000263640.3:c.409C>G	p.Leu137Val	p.L137V	ENST00000263640	NM_001105.4	137	Ctt/Gtt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566848	212566848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	66	388	0	ENST00000342788.4:c.1333C>A	p.Leu445Ile	p.L445I	ENST00000342788	NM_005235.2	445	Cta/Ata																																																																														
ERBB4	0	MSKCC	GRCh37	2	212587239	212587239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	121	587	0	ENST00000342788.4:c.762C>G	p.Asp254Glu	p.D254E	ENST00000342788	NM_005235.2	254	gaC/gaG																																																																														
CUL3	0	MSKCC	GRCh37	2	225376164	225376164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	124	912	0	ENST00000264414.4:c.790G>T	p.Val264Phe	p.V264F	ENST00000264414	NM_003590.4	264	Gtt/Ttt																																																																														
CUL3	0	MSKCC	GRCh37	2	225378309	225378309	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	105	695	0	ENST00000264414.4:c.586G>T	p.Glu196Ter	p.E196*	ENST00000264414	NM_003590.4	196	Gaa/Taa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714381	40714383	+	missense_variant	Missense_Mutation	ONP	CAG	CAG	AGT			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	67	625	1	ENST00000373198.4:c.4014_4016delCTGinsACT	p.Cys1339Leu	p.C1339L	ENST00000373198	NM_133170.3	1338	atCTGt/atACTt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306677	41306677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	97	684	0	ENST00000373198.4:c.982C>G	p.Arg328Gly	p.R328G	ENST00000373198	NM_133170.3	328	Cgc/Ggc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62319506	62319506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1641	191	865	2	ENST00000508582.2:c.1682G>T	p.Cys561Phe	p.C561F	ENST00000508582		561	tGc/tTc																																																																														
BAP1	0	MSKCC	GRCh37	3	52436631	52436631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	96	795	0	ENST00000460680.1:c.2043G>A	p.Met681Ile	p.M681I	ENST00000460680	NM_004656.3	681	atG/atA																																																																														
EPHA3	0	MSKCC	GRCh37	3	89498442	89498442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	113	451	1	ENST00000336596.2:c.2414G>A	p.Ser805Asn	p.S805N	ENST00000336596	NM_005233.5	805	aGc/aAc																																																																														
GATA2	0	MSKCC	GRCh37	3	128200121	128200121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	112	860	0	ENST00000341105.2:c.1184C>G	p.Thr395Ser	p.T395S	ENST00000341105	NM_032638.4	395	aCt/aGt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670399	134670399	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	67	607	0	ENST00000398015.3:c.310G>T	p.Gly104Ter	p.G104*	ENST00000398015	NM_004441.4	104	Gga/Tga																																																																														
KIT	0	MSKCC	GRCh37	4	55599301	55599301	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	114	720	0	ENST00000288135.5:c.2427T>A	p.Cys809Ter	p.C809*	ENST00000288135	NM_000222.2	809	tgT/tgA																																																																														
TAP2	0	MSKCC	GRCh37	6	32803432	32803432	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	120	891	0	ENST00000374899.4:c.727G>T	p.Glu243Ter	p.E243*	ENST00000374899	NM_018833.2	243	Gag/Tag																																																																														
PRDM1	0	MSKCC	GRCh37	6	106543594	106543594	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	74	502	0	ENST00000369096.4:c.396G>C	p.Arg132Ser	p.R132S	ENST00000369096	NM_001198.3	132	agG/agC																																																																														
BRAF	0	MSKCC	GRCh37	7	140501294	140501294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	85	658	0	ENST00000288602.6:c.778C>T	p.Arg260Cys	p.R260C	ENST00000288602	NM_004333.4	260	Cgc/Tgc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873944	151873944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	72	711	0	ENST00000262189.6:c.8594G>C	p.Gly2865Ala	p.G2865A	ENST00000262189	NM_170606.2	2865	gGa/gCa																																																																														
FGFR1	0	MSKCC	GRCh37	8	38285909	38285909	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	97	695	1	ENST00000425967.3:c.502T>A	p.Ser168Thr	p.S168T	ENST00000425967	NM_001174067.1	168	Tct/Act																																																																														
JAK2	0	MSKCC	GRCh37	9	5070016	5070016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	111	712	0	ENST00000381652.3:c.1605G>C	p.Met535Ile	p.M535I	ENST00000381652	NM_004972.3	535	atG/atC																																																																														
NTRK2	0	MSKCC	GRCh37	9	87563419	87563419	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	205	800	2	ENST00000277120.3:c.1807C>A	p.Arg603Ser	p.R603S	ENST00000277120		603	Cgt/Agt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209669	98209669	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	61	632	0	ENST00000331920.6:c.3869C>A	p.Ser1290Ter	p.S1290*	ENST00000331920	NM_000264.3	1290	tCa/tAa																																																																														
AMER1	0	MSKCC	GRCh37	X	63412996	63412996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	127	557	1	ENST00000330258.3:c.171G>T	p.Met57Ile	p.M57I	ENST00000330258	NM_152424.3	57	atG/atT																																																																														
AR	0	MSKCC	GRCh37	X	66942718	66942718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	108	506	3	ENST00000374690.3:c.2499G>T	p.Met833Ile	p.M833I	ENST00000374690	NM_000044.3	833	atG/atT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	360	872	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	523	401	0				ENST00000310581	NM_198253.2																																																																																
DDR2	0	MSKCC	GRCh37	1	162746117	162746117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	141	406	1	ENST00000367921.3:c.2240C>A	p.Ala747Glu	p.A747E	ENST00000367921	NM_006182.2	747	gCa/gAa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373683	118373683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	197	676	0	ENST00000534358.1:c.7076C>T	p.Ser2359Leu	p.S2359L	ENST00000534358	NM_005933.3	2359	tCa/tTa																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281146	49281146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	111	893	1	ENST00000282018.3:c.193C>A	p.Gln65Lys	p.Q65K	ENST00000282018	NM_020377.2	65	Cag/Aag																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420245	88420245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	223	585	0	ENST00000360948.2:c.2441G>T	p.Arg814Leu	p.R814L	ENST00000360948	NM_001012338.2	814	cGg/cTg																																																																														
FANCA	0	MSKCC	GRCh37	16	89836351	89836351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	103	777	0	ENST00000389301.3:c.2398G>A	p.Glu800Lys	p.E800K	ENST00000389301	NM_000135.2	800	Gag/Aag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11100043	11100043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	306	896	0	ENST00000344626.4:c.1169G>T	p.Gly390Val	p.G390V	ENST00000344626	NM_003072.3	390	gGg/gTg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55130019	55130019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1489	120	829	0	ENST00000257290.5:c.553G>C	p.Gly185Arg	p.G185R	ENST00000257290	NM_006206.4	185	Ggg/Cgg																																																																														
KIT	0	MSKCC	GRCh37	4	55594094	55594094	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	80	391	0	ENST00000288135.5:c.1879+1G>T		p.X627_splice	ENST00000288135	NM_000222.2	627																																																																															
TERT	0	MSKCC	GRCh37	5	1279519	1279519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1806	135	797	0	ENST00000310581.5:c.2017C>A	p.Pro673Thr	p.P673T	ENST00000310581	NM_198253.2	673	Ccc/Acc																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225777	26225777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	162	432	0	ENST00000360408.1:c.395G>C	p.Arg132Pro	p.R132P	ENST00000360408	NM_003532.2	132	cGt/cCt																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964345	70964345	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	58	328	0	ENST00000276594.2:c.1683C>G	p.Phe561Leu	p.F561L	ENST00000276594	NM_024504.3	561	ttC/ttG																																																																														
EZH2	0	MSKCC	GRCh37	7	148523578	148523589	+	frameshift_variant	Frame_Shift_Del	DEL	TATTTAAAACAT	TATTTAAAACAT	C			P-0018814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	183	453	0	ENST00000320356.2:c.864_875delinsG	p.Cys289Ter	p.C289*	ENST00000320356	NM_004456.4	288	cgATGTTTTAAATAt/cgGt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952146	178952147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	88	421	0	ENST00000263967.3:c.3203dupA	p.Asn1068LysfsTer5	p.N1068Kfs*5	ENST00000263967	NM_006218.2	1067	-/A																																																																														
TP63	0	MSKCC	GRCh37	3	189612061	189612061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	126	810	1	ENST00000264731.3:c.1813C>T	p.Arg605Trp	p.R605W	ENST00000264731	NM_003722.4	605	Cgg/Tgg																																																																														
FH	0	MSKCC	GRCh37	1	241669468	241669468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	317	530	0	ENST00000366560.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000366560	NM_000143.3	247	Gaa/Aaa																																																																														
NUP93	0	MSKCC	GRCh37	16	56857629	56857629	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	86	648	0	ENST00000308159.5:c.665A>C	p.Asp222Ala	p.D222A	ENST00000308159	NM_014669.4	222	gAc/gCc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302252	15302252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	74	861	0	ENST00000263388.2:c.1019G>T	p.Cys340Phe	p.C340F	ENST00000263388	NM_000435.2	340	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0023530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	213	760	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0023530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	250	796	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	242	781	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0023530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	132	448	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974783	21974786	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0023530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	64	275	0	ENST00000304494.5:c.41_44delACTG	p.Asp14GlyfsTer11	p.D14Gfs*11	ENST00000304494	NM_000077.4	14	gACTGg/gg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974783	21974786	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0023530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	64	275	0	ENST00000304494.5:c.41_44delACTG	p.Asp14GlyfsTer11	p.D14Gfs*11	ENST00000304494	NM_000077.4	14	gACTGg/gg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952146	178952147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	12	502	0	ENST00000263967.3:c.3203dupA	p.Asn1068LysfsTer5	p.N1068Kfs*5	ENST00000263967	NM_006218.2	1067	-/A																																																																														
EGFR	0	MSKCC	GRCh37	7	55242444	55242445	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAATTCCCGTCGCTATC			P-0026045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	150	547	0	ENST00000275493.2:c.2217_2234dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	-/AAAATTCCCGTCGCTATC																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178951939	178951943	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CATAA	CATAA	ATG			P-0026045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	112	513	0	ENST00000263967.3:c.2994_2998delinsATG	p.Phe998LeufsTer2	p.F998Lfs*2	ENST00000263967	NM_006218.2	998	ttCATAAat/ttATGat																																																																														
PLK2	0	MSKCC	GRCh37	5	57753316	57753316	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0026045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	170	418	0	ENST00000274289.3:c.808A>T	p.Met270Leu	p.M270L	ENST00000274289	NM_006622.3	270	Atg/Ttg																																																																														
KIT	0	MSKCC	GRCh37	4	55593578	55593606	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAGAAACCCATGTATGAAGTACAGTGGA	ACAGAAACCCATGTATGAAGTACAGTGGA	-			P-0026071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	169	459	0	ENST00000288135.5:c.1648-3_1673del		p.X550_splice	ENST00000288135	NM_000222.2	550																																																																															
MAP2K4	0	MSKCC	GRCh37	17	11924204	11924204	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0026071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	10	18	0	ENST00000353533.5:c.1A>G	p.Met1?	p.M1?	ENST00000353533	NM_003010.3	1	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0027142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	28	405	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	42	579	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132542	11132542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	38	580	0	ENST00000344626.4:c.2758G>A	p.Glu920Lys	p.E920K	ENST00000344626	NM_003072.3	920	Gag/Aag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0027142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	19	192	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0027142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	19	192	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32900239	32900239	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0027142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	27	312	0	ENST00000380152.3:c.427C>G	p.Pro143Ala	p.P143A	ENST00000380152		143	Cct/Gct																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	365	1030	3	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
MAPK3	0	MSKCC	GRCh37	16	30128559	30128559	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	164	842	0	ENST00000263025.4:c.823A>G	p.Met275Val	p.M275V	ENST00000263025	NM_002746.2	275	Atg/Gtg																																																																														
NUP93	0	MSKCC	GRCh37	16	56872946	56872951	+	inframe_deletion	In_Frame_Del	DEL	GAGTAT	GAGTAT	-			P-0017971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	103	685	0	ENST00000308159.5:c.2101_2106delGAGTAT	p.Glu701_Tyr702del	p.E701_Y702del	ENST00000308159	NM_014669.4	701	GAGTAT/-																																																																														
BAP1	0	MSKCC	GRCh37	3	52441261	52441261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	178	822	0	ENST00000460680.1:c.509T>G	p.Phe170Cys	p.F170C	ENST00000460680	NM_004656.3	170	tTt/tGt																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120219	94120219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0017971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	78	510	3	ENST00000369303.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000369303	NM_004440.3	278	Ccc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	390	872	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	356	522	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
CHEK2	0	MSKCC	GRCh37	22	29107902	29107902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	38	577	0	ENST00000328354.6:c.787G>C	p.Glu263Gln	p.E263Q	ENST00000328354	NM_007194.3	263	Gag/Cag																																																																														
REL	0	MSKCC	GRCh37	2	61121601	61121601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	154	576	0	ENST00000295025.8:c.223C>T	p.His75Tyr	p.H75Y	ENST00000295025	NM_002908.2	75	Cat/Tat																																																																														
IRS2	0	MSKCC	GRCh37	13	110435582	110435582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	98	300	4	ENST00000375856.3:c.2819C>T	p.Ala940Val	p.A940V	ENST00000375856	NM_003749.2	940	gCg/gTg																																																																														
AXL	0	MSKCC	GRCh37	19	41743895	41743895	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	191	929	0	ENST00000301178.4:c.830del	p.Asp277AlafsTer20	p.D277Afs*20	ENST00000301178	NM_021913.4	277	gAc/gc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499434	89499434	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	136	566	0	ENST00000336596.2:c.2604A>C	p.Arg868Ser	p.R868S	ENST00000336596	NM_005233.5	868	agA/agC																																																																														
KDR	0	MSKCC	GRCh37	4	55979613	55979613	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	186	652	0	ENST00000263923.4:c.834A>T	p.Lys278Asn	p.K278N	ENST00000263923	NM_002253.2	278	aaA/aaT																																																																														
FAM175A	0	MSKCC	GRCh37	4	84388689	84388689	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0022151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	121	580	0	ENST00000321945.7:c.599C>A	p.Ser200Tyr	p.S200Y	ENST00000321945	NM_139076.2	200	tCt/tAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187541351	187541351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	52	477	0	ENST00000441802.2:c.6389G>T	p.Gly2130Val	p.G2130V	ENST00000441802	NM_005245.3	2130	gGa/gTa																																																																														
PLK2	0	MSKCC	GRCh37	5	57752357	57752357	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	163	543	0	ENST00000274289.3:c.1216T>G	p.Ser406Ala	p.S406A	ENST00000274289	NM_006622.3	406	Tca/Gca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0026569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			776	27	615	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	26	445	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	69	398	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	24	284	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
RBM10	0	MSKCC	GRCh37	X	47045533	47045533	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	46	517	1	ENST00000329236.7:c.2266A>T	p.Lys756Ter	p.K756*	ENST00000329236	NM_001204466.1	756	Aag/Tag																																																																														
FLT1	0	MSKCC	GRCh37	13	28880903	28880903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	37	352	0	ENST00000282397.4:c.3727C>A	p.Gln1243Lys	p.Q1243K	ENST00000282397	NM_002019.4	1243	Cag/Aag																																																																														
RBM10	0	MSKCC	GRCh37	X	47045136	47045136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	49	477	1	ENST00000329236.7:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000329236	NM_001204466.1	715	Cga/Tga																																																																														
INPP4B	0	MSKCC	GRCh37	4	143033804	143033804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	37	285	0	ENST00000262992.4:c.2167G>T	p.Ala723Ser	p.A723S	ENST00000262992	NM_001101669.1	723	Gcc/Tcc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3777798	3777798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	88	722	0	ENST00000262367.5:c.7250G>T	p.Arg2417Met	p.R2417M	ENST00000262367	NM_004380.2	2417	aGg/aTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10273863	10273863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	53	541	0	ENST00000330684.3:c.406G>T	p.Ala136Ser	p.A136S	ENST00000330684	NM_001134407.1	136	Gct/Tct																																																																														
JAK3	0	MSKCC	GRCh37	19	17953196	17953196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	47	648	1	ENST00000458235.1:c.790G>A	p.Gly264Ser	p.G264S	ENST00000458235	NM_000215.3	264	Ggc/Agc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25464491	25464491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	29	440	1	ENST00000264709.3:c.2022G>T	p.Met674Ile	p.M674I	ENST00000264709	NM_175629.2	674	atG/atT																																																																														
ALK	0	MSKCC	GRCh37	2	29445402	29445402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	44	579	0	ENST00000389048.3:c.3431C>T	p.Pro1144Leu	p.P1144L	ENST00000389048	NM_004304.4	1144	cCc/cTc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31388641	31388641	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	32	366	0	ENST00000328111.2:c.1906A>T	p.Ile636Phe	p.I636F	ENST00000328111	NM_006892.3	636	Att/Ttt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280153	66280153	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	30	216	0	ENST00000273854.3:c.1536G>C	p.Glu512Asp	p.E512D	ENST00000273854	NM_004439.5	512	gaG/gaC																																																																														
TEK	0	MSKCC	GRCh37	9	27190620	27190620	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	36	495	0	ENST00000380036.4:c.1421G>C	p.Gly474Ala	p.G474A	ENST00000380036	NM_000459.3	474	gGa/gCa																																																																														
TEK	0	MSKCC	GRCh37	9	27218786	27218786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	50	371	0	ENST00000380036.4:c.3074G>T	p.Gly1025Val	p.G1025V	ENST00000380036	NM_000459.3	1025	gGt/gTt																																																																														
RBM10	0	MSKCC	GRCh37	X	47032548	47032548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	57	567	1	ENST00000329236.7:c.223C>T	p.His75Tyr	p.H75Y	ENST00000329236	NM_001204466.1	75	Cac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	156	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RB1	0	MSKCC	GRCh37	13	48947603	48947603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	44	418	0	ENST00000267163.4:c.1190C>T	p.Ser397Leu	p.S397L	ENST00000267163	NM_000321.2	397	tCa/tTa																																																																														
EED	0	MSKCC	GRCh37	11	85961354	85961354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	54	316	0	ENST00000263360.6:c.131T>C	p.Ile44Thr	p.I44T	ENST00000263360	NM_003797.3	44	aTa/aCa																																																																														
TRAF7	0	MSKCC	GRCh37	16	2226080	2226080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	46	665	2	ENST00000326181.6:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000326181	NM_032271.2	593	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577139	7577145	+	frameshift_variant	Frame_Shift_Del	DEL	GTCCCAG	GTCCCAG	-			P-0026831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	98	589	0	ENST00000269305.4:c.793_799del	p.Leu265GlyfsTer78	p.L265Gfs*78	ENST00000269305	NM_001126112.2	265	CTGGGACgg/gg																																																																														
KMT2C	0	MSKCC	GRCh37	7	152055686	152055686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	53	570	0	ENST00000262189.6:c.236C>T	p.Thr79Met	p.T79M	ENST00000262189	NM_170606.2	79	aCg/aTg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63845634	63845634	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	35	308	0	ENST00000279873.7:c.1376del	p.Pro459GlnfsTer20	p.P459Qfs*20	ENST00000279873	NM_032199.2	458	gCc/gc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	152	406	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0026839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	43	521	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652147	36652148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	172	583	0	ENST00000244741.5:c.270dup	p.Gly91ArgfsTer38	p.G91Rfs*38	ENST00000244741	NM_000389.4	90	gga/ggAa																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651893	36651894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	206	472	0	ENST00000244741.5:c.19dup	p.Asp7GlyfsTer29	p.D7Gfs*29	ENST00000244741	NM_000389.4	5	-/G																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281768	49281768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148425155		P-0026839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	229	640	1	ENST00000282018.3:c.815C>T	p.Thr272Met	p.T272M	ENST00000282018	NM_020377.2	272	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	104	549	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0026840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	35	397	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	114	439	1	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720735	89720736	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0026840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	44	105	0	ENST00000371953.3:c.888_889del	p.Cys296Ter	p.C296*	ENST00000371953	NM_000314.4	296	TGt/t																																																																														
BRAF	0	MSKCC	GRCh37	7	140481400	140481400	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	81	391	0	ENST00000288602.6:c.1408A>C	p.Thr470Pro	p.T470P	ENST00000288602	NM_004333.4	470	Aca/Cca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	214	462	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	356	603	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
RAF1	0	MSKCC	GRCh37	3	12629100	12629100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	220	414	2	ENST00000251849.4:c.1407G>A	p.Met469Ile	p.M469I	ENST00000251849	NM_002880.3	469	atG/atA																																																																														
KMT2B	0	MSKCC	GRCh37	19	36222953	36222953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	219	776	0	ENST00000222270.7:c.5582C>T	p.Ser1861Leu	p.S1861L	ENST00000222270	NM_014727.1	1861	tCg/tTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971114	21971131	+	inframe_deletion	In_Frame_Del	DEL	CGGGTCGGGTGAGAGTGG	CGGGTCGGGTGAGAGTGG	-			P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	60	531	0	ENST00000304494.5:c.227_244del	p.Ala76_Pro81del	p.A76_P81del	ENST00000304494	NM_000077.4	76	gCCACTCTCACCCGACCCGtg/gtg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971114	21971131	+	inframe_deletion	In_Frame_Del	DEL	CGGGTCGGGTGAGAGTGG	CGGGTCGGGTGAGAGTGG	-			P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	60	531	0	ENST00000304494.5:c.227_244del	p.Ala76_Pro81del	p.A76_P81del	ENST00000304494	NM_000077.4	76	gCCACTCTCACCCGACCCGtg/gtg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971114	21971131	+	inframe_deletion	In_Frame_Del	DEL	CGGGTCGGGTGAGAGTGG	CGGGTCGGGTGAGAGTGG	-			P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	60	531	0	ENST00000304494.5:c.227_244del	p.Ala76_Pro81del	p.A76_P81del	ENST00000304494	NM_000077.4	76	gCCACTCTCACCCGACCCGtg/gtg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891337	101891337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	280	656	0	ENST00000374994.4:c.298T>C	p.Cys100Arg	p.C100R	ENST00000374994	NM_004612.2	100	Tgc/Cgc																																																																														
RB1	0	MSKCC	GRCh37	13	49037944	49037944	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	106	541	0	ENST00000267163.4:c.2184C>A	p.Tyr728Ter	p.Y728*	ENST00000267163	NM_000321.2	728	taC/taA																																																																														
SLX4	0	MSKCC	GRCh37	16	3633115	3633115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	112	514	0	ENST00000294008.3:c.5136C>A	p.Ser1712Arg	p.S1712R	ENST00000294008	NM_032444.2	1712	agC/agA																																																																														
CREBBP	0	MSKCC	GRCh37	16	3823901	3823901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	78	673	1	ENST00000262367.5:c.2314C>T	p.Pro772Ser	p.P772S	ENST00000262367	NM_004380.2	772	Cct/Tct																																																																														
TP53	0	MSKCC	GRCh37	17	7577555	7577555	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	411	583	0	ENST00000269305.4:c.726C>A	p.Cys242Ter	p.C242*	ENST00000269305	NM_001126112.2	242	tgC/tgA																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589577	67589591	+	inframe_deletion	In_Frame_Del	DEL	AAAAATTACATGAAT	AAAAATTACATGAAT	-			P-0026937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	60	339	0	ENST00000274335.5:c.1341_1355del	p.Lys447_Tyr452delinsAsn	p.K447_Y452delinsN	ENST00000274335		447	aAAAAATTACATGAATat/aat																																																																														
IRF4	0	MSKCC	GRCh37	6	393285	393285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	100	698	0	ENST00000380956.4:c.133G>A	p.Glu45Lys	p.E45K	ENST00000380956	NM_001195286.1	45	Gag/Aag																																																																														
GATA1	0	MSKCC	GRCh37	X	48650547	48650547	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	82	710	1	ENST00000376670.3:c.517T>C	p.Phe173Leu	p.F173L	ENST00000376670	NM_002049.3	173	Ttt/Ctt																																																																														
ATRX	0	MSKCC	GRCh37	X	76872192	76872192	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	33	398	0	ENST00000373344.5:c.5455G>C	p.Asp1819His	p.D1819H	ENST00000373344	NM_000489.3	1819	Gat/Cat																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	106	524	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	85	371	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
TET1	0	MSKCC	GRCh37	10	70441157	70441157	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	43	432	2	ENST00000373644.4:c.4832delA	p.Asn1611ThrfsTer13	p.N1611Tfs*13	ENST00000373644	NM_030625.2	1609	gAa/ga																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	53	278	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717630	89717630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	84	414	0	ENST00000371953.3:c.655C>T	p.Gln219Ter	p.Q219*	ENST00000371953	NM_000314.4	219	Cag/Tag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	105	461	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	104	478	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	179	862	0	ENST00000227507.2:c.857C>T	p.Thr286Ile	p.T286I	ENST00000227507	NM_053056.2	286	aCa/aTa																																																																														
GATA3	0	MSKCC	GRCh37	10	8115780	8115780	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	150	654	0	ENST00000346208.3:c.1131del	p.Val378CysfsTer26	p.V378Cfs*26	ENST00000346208		376	Aaa/aa																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664651	138664651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	14	72	0	ENST00000330315.3:c.914C>T	p.Pro305Leu	p.P305L	ENST00000330315	NM_023067.3	305	cCg/cTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	136	819	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748356	43748356	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	169	717	0	ENST00000382044.4:c.2450A>G	p.Tyr817Cys	p.Y817C	ENST00000382044	NM_001141980.1	817	tAt/tGt																																																																														
STK11	0	MSKCC	GRCh37	19	1226560	1226560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	152	612	2	ENST00000326873.7:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000326873	NM_000455.4	406	Gcg/Acg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214094	36214094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	200	816	1	ENST00000222270.7:c.2920C>T	p.Arg974Cys	p.R974C	ENST00000222270	NM_014727.1	974	Cgt/Tgt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25457226	25457227	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	158	670	0	ENST00000264709.3:c.2660_2661del	p.Arg887ThrfsTer33	p.R887Tfs*33	ENST00000264709	NM_175629.2	887	aGA/a																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591129	67591130	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAGACG			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	64	373	0	ENST00000274335.5:c.1724_1729dup	p.Lys575_Thr576dup	p.K575_T576dup	ENST00000274335		575	-/AAGACG																																																																														
PTCH1	0	MSKCC	GRCh37	9	98270595	98270595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	28	68	0	ENST00000331920.6:c.49G>A	p.Gly17Ser	p.G17S	ENST00000331920	NM_000264.3	17	Ggc/Agc																																																																														
STK11	0	MSKCC	GRCh37	19	1220488	1220488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	218	670	0	ENST00000326873.7:c.581A>G	p.Asp194Gly	p.D194G	ENST00000326873	NM_000455.4	194	gAc/gGc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026096	71026096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	191	383	0	ENST00000318789.4:c.1526G>T	p.Trp509Leu	p.W509L	ENST00000318789	NM_032682.5	509	tGg/tTg																																																																														
RIT1	0	MSKCC	GRCh37	1	155874263	155874263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	216	569	0	ENST00000368323.3:c.268A>G	p.Met90Val	p.M90V	ENST00000368323	NM_006912.5	90	Atg/Gtg																																																																														
PARP1	0	MSKCC	GRCh37	1	226549740	226549740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	181	592	0	ENST00000366794.5:c.2893G>T	p.Asp965Tyr	p.D965Y	ENST00000366794	NM_001618.3	965	Gat/Tat																																																																														
NF1	0	MSKCC	GRCh37	17	29657391	29657391	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	205	639	1	ENST00000358273.4:c.5687C>G	p.Ser1896Ter	p.S1896*	ENST00000358273	NM_001042492.2	1896	tCa/tGa																																																																														
BRIP1	0	MSKCC	GRCh37	17	59871029	59871029	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	165	532	0	ENST00000259008.2:c.1402T>A	p.Trp468Arg	p.W468R	ENST00000259008	NM_032043.2	468	Tgg/Agg																																																																														
UPF1	0	MSKCC	GRCh37	19	18972882	18972882	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	293	678	0	ENST00000262803.5:c.2521T>G	p.Cys841Gly	p.C841G	ENST00000262803	NM_002911.3	841	Tgt/Ggt																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540397	23540434	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	GAGCATCCCGGCGGCCCCGCCTTGGCCTGAATGCACCC	GAGCATCCCGGCGGCCCCGCCTTGGCCTGAATGCACCC	-			P-0026987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	53	359	0	ENST00000380871.4:c.-32_6del		p.*11*	ENST00000380871	NM_006167.3	11																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	172	552	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	324	686	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	257	564	1	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
SLX4	0	MSKCC	GRCh37	16	3639726	3639726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1523	185	850	2	ENST00000294008.3:c.3913G>A	p.Ala1305Thr	p.A1305T	ENST00000294008	NM_032444.2	1305	Gca/Aca																																																																														
GNAS	0	MSKCC	GRCh37	20	57480529	57480529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	72	370	1	ENST00000371085.3:c.524C>A	p.Ala175Asp	p.A175D	ENST00000371085	NM_000516.4	175	gCc/gAc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265762	41266317	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAA	TGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAA	-			P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	35	35	0	ENST00000349496.5:c.13+191_241+74del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
HGF	0	MSKCC	GRCh37	7	81350164	81350164	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0026988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	41	341	0	ENST00000222390.5:c.1169-1G>T		p.X390_splice	ENST00000222390	NM_000601.4	390																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	86	606	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0026990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	82	439	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0026990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	178	691	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																														
HGF	0	MSKCC	GRCh37	7	81358955	81358955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	79	593	1	ENST00000222390.5:c.1006G>A	p.Glu336Lys	p.E336K	ENST00000222390	NM_000601.4	336	Gag/Aag																																																																														
FLT3	0	MSKCC	GRCh37	13	28623903	28623903	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1707	97	473	0	ENST00000241453.7:c.751C>T	p.Gln251Ter	p.Q251*	ENST00000241453	NM_004119.2	251	Caa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112174031	112174032	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0026990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	48	410	0	ENST00000257430.4:c.2744_2745del	p.Val915AspfsTer3	p.V915Dfs*3	ENST00000257430	NM_000038.5	914	TGt/t																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974770	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGT			P-0026992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	16	221	0	ENST00000304494.5:c.52_57dup	p.Thr18_Ala19dup	p.T18_A19dup	ENST00000304494	NM_000077.4	18	-/ACGGCC																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974770	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGT			P-0026992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	16	221	0	ENST00000304494.5:c.52_57dup	p.Thr18_Ala19dup	p.T18_A19dup	ENST00000304494	NM_000077.4	18	-/ACGGCC																																																																														
CDH1	0	MSKCC	GRCh37	16	68846063	68846063	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	87	644	0	ENST00000261769.5:c.1034T>A	p.Val345Asp	p.V345D	ENST00000261769	NM_004360.3	345	gTt/gAt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691943	30691943	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	31	325	0	ENST00000359013.4:c.520T>G	p.Phe174Val	p.F174V	ENST00000359013	NM_001024847.2	174	Ttc/Gtc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	113	633	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664448	138664448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	78	519	2	ENST00000330315.3:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000330315	NM_023067.3	373	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	292	409	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	93	327	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	122	673	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	182	334	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	95	509	0	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11106926	11106928	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	109	700	0	ENST00000344626.4:c.1636_1638delAAG	p.Lys546del	p.K546del	ENST00000344626	NM_003072.3	544	cAGAag/cag																																																																														
SETD2	0	MSKCC	GRCh37	3	47125634	47125634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	85	320	0	ENST00000409792.3:c.5636G>A	p.Arg1879His	p.R1879H	ENST00000409792	NM_014159.6	1879	cGc/cAc																																																																														
CARD11	0	MSKCC	GRCh37	7	2962929	2962929	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147006022		P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	83	768	2	ENST00000396946.4:c.1979G>A	p.Arg660Gln	p.R660Q	ENST00000396946	NM_032415.4	660	cGg/cAg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41267186	41267186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	119	335	0	ENST00000349496.5:c.770C>T	p.Thr257Ile	p.T257I	ENST00000349496	NM_001904.3	257	aCa/aTa																																																																														
SOX9	0	MSKCC	GRCh37	17	70117878	70117888	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCAGGCGGC	GCGCAGGCGGC	-			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	37	385	0	ENST00000245479.2:c.353_363del	p.Ala118GlufsTer130	p.A118Efs*130	ENST00000245479	NM_000346.3	116	GCGCAGGCGGCg/g																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465543	8465543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	283	482	0	ENST00000356435.5:c.3637G>A	p.Gly1213Arg	p.G1213R	ENST00000356435		1213	Gga/Aga																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457402	67457402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	78	530	1	ENST00000327367.4:c.376C>T	p.His126Tyr	p.H126Y	ENST00000327367	NM_005902.3	126	Cac/Tac																																																																														
SMAD3	0	MSKCC	GRCh37	15	67477156	67477156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	128	507	1	ENST00000327367.4:c.964del	p.Gln322SerfsTer19	p.Q322Sfs*19	ENST00000327367	NM_005902.3	321	aaC/aa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67477178	67477187	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACCGTCT	GCCACCGTCT	-			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	65	443	0	ENST00000327367.4:c.987_996del	p.Thr330ArgfsTer8	p.T330Rfs*8	ENST00000327367	NM_005902.3	329	GCCACCGTCTgc/gc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3790495	3790496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	207	528	1	ENST00000262367.5:c.4037dupT	p.Leu1346PhefsTer8	p.L1346Ffs*8	ENST00000262367	NM_004380.2	1346	ttg/ttTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89341299	89341299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	57	159	1	ENST00000301030.4:c.7636G>A	p.Ala2546Thr	p.A2546T	ENST00000301030	NM_001256183.1	2546	Gcc/Acc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45374932	45374932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	288	510	0	ENST00000262160.6:c.911A>G	p.Asp304Gly	p.D304G	ENST00000262160	NM_005901.5	304	gAc/gGc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395643	45395643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	94	444	0	ENST00000262160.6:c.491C>T	p.Pro164Leu	p.P164L	ENST00000262160	NM_005901.5	164	cCt/cTt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41514459	41514459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	88	401	0	ENST00000373198.4:c.202G>T	p.Ala68Ser	p.A68S	ENST00000373198	NM_133170.3	68	Gca/Tca																																																																														
FOXP1	0	MSKCC	GRCh37	3	71096092	71096092	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	84	210	0	ENST00000318789.4:c.664+1G>A		p.X222_splice	ENST00000318789	NM_032682.5	222																																																																															
DROSHA	0	MSKCC	GRCh37	5	31508784	31508784	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	148	620	0	ENST00000344624.3:c.1531A>T	p.Lys511Ter	p.K511*	ENST00000344624		511	Aaa/Taa																																																																														
FYN	0	MSKCC	GRCh37	6	112041022	112041022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	80	360	0	ENST00000368678.4:c.233C>T	p.Thr78Met	p.T78M	ENST00000368678		78	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	60	549	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	168	745	1	ENST00000269305.4:c.440T>A	p.Val147Asp	p.V147D	ENST00000269305	NM_001126112.2	147	gTt/gAt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0027010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	190	445	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
SETD2	0	MSKCC	GRCh37	3	47155365	47155365	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0027013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	103	408	1	ENST00000409792.3:c.4715+1G>A		p.X1572_splice	ENST00000409792	NM_014159.6	1572																																																																															
BAP1	0	MSKCC	GRCh37	3	52440925	52440925	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0027013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	185	531	0	ENST00000460680.1:c.581-2A>G		p.X194_splice	ENST00000460680	NM_004656.3	194																																																																															
NF2	0	MSKCC	GRCh37	22	30051572	30051605	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTTGGTAGGTAATAAATCTGTATCAGATGAC	TTTTTTGGTAGGTAATAAATCTGTATCAGATGAC	-			P-0027013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	35	322	0	ENST00000338641.4:c.517-10_540del		p.X173_splice	ENST00000338641	NM_000268.3	173																																																																															
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	162	419	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47165084	47165084	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	41	290	1	ENST00000409792.3:c.1042G>T	p.Glu348Ter	p.E348*	ENST00000409792	NM_014159.6	348	Gaa/Taa																																																																														
AKT2	0	MSKCC	GRCh37	19	40742005	40742005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	189	485	0	ENST00000392038.2:c.967G>C	p.Glu323Gln	p.E323Q	ENST00000392038	NM_001626.4	323	Gag/Cag																																																																														
POLE	0	MSKCC	GRCh37	12	133219161	133219161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	85	622	0	ENST00000320574.5:c.4883G>T	p.Gly1628Val	p.G1628V	ENST00000320574	NM_006231.2	1628	gGa/gTa																																																																														
RB1	0	MSKCC	GRCh37	13	48947628	48947628	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	62	269	0	ENST00000267163.4:c.1215C>A	p.Asn405Lys	p.N405K	ENST00000267163	NM_000321.2	405	aaC/aaA																																																																														
FLCN	0	MSKCC	GRCh37	17	17118339	17118339	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	258	558	0	ENST00000285071.4:c.1498del	p.Val500TrpfsTer13	p.V500Wfs*13	ENST00000285071	NM_144997.5	500	Gtg/tg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602761	10602761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	208	647	0	ENST00000171111.5:c.817T>C	p.Cys273Arg	p.C273R	ENST00000171111	NM_203500.1	273	Tgc/Cgc																																																																														
SOS1	0	MSKCC	GRCh37	2	39285875	39285875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	89	429	0	ENST00000402219.2:c.284A>G	p.Glu95Gly	p.E95G	ENST00000402219	NM_005633.3	95	gAa/gGa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62317148	62317148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	287	587	0	ENST00000508582.2:c.1343A>G	p.His448Arg	p.H448R	ENST00000508582		448	cAc/cGc																																																																														
SETD2	0	MSKCC	GRCh37	3	47098547	47098547	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	63	363	0	ENST00000409792.3:c.6727C>T	p.Gln2243Ter	p.Q2243*	ENST00000409792	NM_014159.6	2243	Cag/Tag																																																																														
RBM10	0	MSKCC	GRCh37	X	47041432	47041433	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0027018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	159	223	0	ENST00000329236.7:c.1542_1543insT	p.Asn515Ter	p.N515*	ENST00000329236	NM_001204466.1	514	-/T																																																																														
CASP8	0	MSKCC	GRCh37	2	202139642	202139642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	77	359	1	ENST00000358485.4:c.803C>T	p.Ser268Leu	p.S268L	ENST00000358485	NM_001080125.1	268	tCg/tTg																																																																														
IRS1	0	MSKCC	GRCh37	2	227661126	227661126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	89	544	1	ENST00000305123.5:c.2329C>A	p.Pro777Thr	p.P777T	ENST00000305123	NM_005544.2	777	Ccc/Acc																																																																														
MED12	0	MSKCC	GRCh37	X	70348538	70348538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	37	257	0	ENST00000374080.3:c.3445T>C	p.Cys1149Arg	p.C1149R	ENST00000374080		1149	Tgt/Cgt																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0027039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	79	367	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0027039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	37	418	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	126	553	1	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302307	15302307	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115029695		P-0027039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	65	726	1	ENST00000263388.2:c.964G>A	p.Val322Met	p.V322M	ENST00000263388	NM_000435.2	322	Gtg/Atg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443902	49443902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	142	658	2	ENST00000301067.7:c.3469C>A	p.Pro1157Thr	p.P1157T	ENST00000301067	NM_003482.3	1157	Ccc/Acc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71161772	71161772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	29	365	0	ENST00000318789.4:c.197G>C	p.Arg66Thr	p.R66T	ENST00000318789	NM_032682.5	66	aGa/aCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0027042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	80	559	3	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0027042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	10	99	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141534	11141534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	35	658	0	ENST00000344626.4:c.3511G>A	p.Val1171Met	p.V1171M	ENST00000344626	NM_003072.3	1171	Gtg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0027042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	63	751	0	ENST00000269305.4:c.389T>C	p.Leu130Pro	p.L130P	ENST00000269305	NM_001126112.2	130	cTc/cCc																																																																														
FAT1	0	MSKCC	GRCh37	4	187540442	187540442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs183723851		P-0027043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	166	416	0	ENST00000441802.2:c.7298A>G	p.Asn2433Ser	p.N2433S	ENST00000441802	NM_005245.3	2433	aAt/aGt																																																																														
RAF1	0	MSKCC	GRCh37	3	12650414	12650417	+	protein_altering_variant	In_Frame_Del	DEL	CTTC	CTTC	A			P-0027043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	91	373	0	ENST00000251849.4:c.429_432delinsT	p.Lys144del	p.K144del	ENST00000251849	NM_002880.3	143	cgGAAG/cgT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0027044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	126	531	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0027044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	121	466	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ATM	0	MSKCC	GRCh37	11	108164163	108164163	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0027044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	105	337	0	ENST00000278616.4:c.4735C>T	p.Gln1579Ter	p.Q1579*	ENST00000278616	NM_000051.3	1579	Caa/Taa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021142	31021142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	168	691	0	ENST00000375687.4:c.1141G>A	p.Glu381Lys	p.E381K	ENST00000375687	NM_015338.5	381	Gaa/Aaa																																																																														
TET2	0	MSKCC	GRCh37	4	106158208	106158208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	91	439	7	ENST00000380013.4:c.3109G>A	p.Ala1037Thr	p.A1037T	ENST00000380013	NM_001127208.2	1037	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	303	574	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499483	89499483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	62	448	0	ENST00000336596.2:c.2653C>T	p.Pro885Ser	p.P885S	ENST00000336596	NM_005233.5	885	Ccc/Tcc																																																																														
ATRX	0	MSKCC	GRCh37	X	76813092	76813092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	73	524	0	ENST00000373344.5:c.6529G>A	p.Asp2177Asn	p.D2177N	ENST00000373344	NM_000489.3	2177	Gat/Aat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465638	8465638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	35	425	0	ENST00000356435.5:c.3542G>A	p.Arg1181His	p.R1181H	ENST00000356435		1181	cGt/cAt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78727982	78727982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	157	291	0	ENST00000306801.3:c.827G>T	p.Arg276Leu	p.R276L	ENST00000306801	NM_020761.2	276	cGc/cTc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98248085	98248085	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	194	515	1	ENST00000331920.6:c.466C>T	p.Gln156Ter	p.Q156*	ENST00000331920	NM_000264.3	156	Caa/Taa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992258	72992258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	221	680	0	ENST00000268489.5:c.1787A>G	p.Asn596Ser	p.N596S	ENST00000268489	NM_006885.3	596	aAt/aGt																																																																														
MSH6	0	MSKCC	GRCh37	2	48025871	48025871	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	90	398	1	ENST00000234420.5:c.749T>A	p.Val250Asp	p.V250D	ENST00000234420	NM_000179.2	250	gTc/gAc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098933	178098933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	145	345	0	ENST00000397062.3:c.112G>C	p.Asp38His	p.D38H	ENST00000397062	NM_006164.4	38	Gac/Cac																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100998	41100998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	267	485	1	ENST00000373198.4:c.1358G>T	p.Arg453Leu	p.R453L	ENST00000373198	NM_133170.3	453	cGc/cTc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89462338	89462338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	62	530	0	ENST00000336596.2:c.1810G>A	p.Asp604Asn	p.D604N	ENST00000336596	NM_005233.5	604	Gac/Aac																																																																														
ATR	0	MSKCC	GRCh37	3	142231120	142231120	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	314	437	0	ENST00000350721.4:c.4834A>C	p.Asn1612His	p.N1612H	ENST00000350721	NM_001184.3	1612	Aat/Cat																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928069	178928098	+	inframe_deletion	In_Frame_Del	DEL	TCATGGATTAGAAGATTTGCTGAACCCTAT	TCATGGATTAGAAGATTTGCTGAACCCTAT	-			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	237	511	0	ENST00000263967.3:c.1348_1377del	p.His450_Ile459del	p.H450_I459del	ENST00000263967	NM_006218.2	449	ccTCATGGATTAGAAGATTTGCTGAACCCTATt/cct																																																																														
MED12	0	MSKCC	GRCh37	X	70350065	70350065	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	219	345	0	ENST00000374080.3:c.4047+1G>T		p.X1349_splice	ENST00000374080		1349																																																																															
STAG2	0	MSKCC	GRCh37	X	123179167	123179168	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	49	453	0	ENST00000218089.9:c.616_617delinsTT	p.Gly206Leu	p.G206L	ENST00000218089	NM_001042749.1	206	GGa/TTa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928100	178928100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0027048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	241	463	0	ENST00000263967.3:c.1378G>A	p.Gly460Ser	p.G460S	ENST00000263967	NM_006218.2	460	Ggt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	28	393	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0026262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	60	439	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600324	10600324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0026262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			369	25	462	0	ENST00000171111.5:c.1531G>T	p.Gly511Cys	p.G511C	ENST00000171111	NM_203500.1	511	Ggc/Tgc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678622	88678622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	17	291	0	ENST00000360948.2:c.914C>A	p.Pro305Gln	p.P305Q	ENST00000360948	NM_001012338.2	305	cCa/cAa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133825	55133825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	32	389	0	ENST00000257290.5:c.1038G>T	p.Arg346Ser	p.R346S	ENST00000257290	NM_006206.4	346	agG/agT																																																																														
RET	0	MSKCC	GRCh37	10	43598056	43598056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	27	549	0	ENST00000355710.3:c.604G>T	p.Val202Leu	p.V202L	ENST00000355710	NM_020975.4	202	Gtg/Ttg																																																																														
NF1	0	MSKCC	GRCh37	17	29657408	29657408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	39	492	0	ENST00000358273.4:c.5704G>T	p.Ala1902Ser	p.A1902S	ENST00000358273	NM_001042492.2	1902	Gcc/Tcc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41246699	41246699	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	26	406	0	ENST00000357654.3:c.849A>T	p.Leu283Phe	p.L283F	ENST00000357654	NM_007294.3	283	ttA/ttT																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31376794	31376794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	31	482	0	ENST00000328111.2:c.789G>T	p.Trp263Cys	p.W263C	ENST00000328111	NM_006892.3	263	tgG/tgT																																																																														
FLT4	0	MSKCC	GRCh37	5	180057001	180057001	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	45	660	0	ENST00000261937.6:c.618C>A	p.Cys206Ter	p.C206*	ENST00000261937	NM_182925.4	206	tgC/tgA																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0026855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	140	303	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
U2AF1	0	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	274	432	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																														
TBX3	0	MSKCC	GRCh37	12	115118744	115118745	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAT			P-0026855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1439	374	666	0	ENST00000257566.3:c.596_597insATC	p.Ser199dup	p.S199dup	ENST00000257566	NM_016569.3	199	tcc/tcATCc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30046524	30046524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	398	616	2	ENST00000331968.5:c.2659C>T	p.Pro887Ser	p.P887S	ENST00000331968	NM_002742.2	887	Cca/Tca																																																																														
APC	0	MSKCC	GRCh37	5	112176520	112176521	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	307	429	0	ENST00000257430.4:c.5234dup	p.Ile1746AspfsTer23	p.I1746Dfs*23	ENST00000257430	NM_000038.5	1743	-/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	288	587	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187549428	187549428	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2304867		P-0026907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	138	533	3	ENST00000441802.2:c.4690G>A	p.Ala1564Thr	p.A1564T	ENST00000441802	NM_005245.3	1564	Gct/Act																																																																														
PTEN	0	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	166	319	0	ENST00000371953.3:c.176C>G	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tGa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087549	27087550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	374	627	1	ENST00000324856.7:c.2124dup	p.Ser709ValfsTer108	p.S709Vfs*108	ENST00000324856	NM_006015.4	708	cag/caGg																																																																														
ATM	0	MSKCC	GRCh37	11	108186583	108186583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	115	364	1	ENST00000278616.4:c.6040G>A	p.Glu2014Lys	p.E2014K	ENST00000278616	NM_000051.3	2014	Gag/Aag																																																																														
ERF	0	MSKCC	GRCh37	19	42753584	42753584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	580	766	0	ENST00000222329.4:c.680A>G	p.His227Arg	p.H227R	ENST00000222329	NM_006494.2	227	cAt/cGt																																																																														
ETV1	0	MSKCC	GRCh37	7	13971369	13971369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	142	351	2	ENST00000405192.2:c.560G>A	p.Arg187His	p.R187H	ENST00000405192	NM_001163147.1	187	cGc/cAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500985	8500985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	64	322	0	ENST00000356435.5:c.1897C>T	p.Pro633Ser	p.P633S	ENST00000356435		633	Cca/Tca																																																																														
SPEN	0	MSKCC	GRCh37	1	16255281	16255281	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	136	624	0	ENST00000375759.3:c.2549del	p.Lys850SerfsTer8	p.K850Sfs*8	ENST00000375759	NM_015001.2	849	gAa/ga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	129	635	1	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	81	423	3	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
NEGR1	0	MSKCC	GRCh37	1	72748053	72748053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	144	638	1	ENST00000357731.5:c.125G>T	p.Trp42Leu	p.W42L	ENST00000357731	NM_173808.2	42	tGg/tTg																																																																														
FUBP1	0	MSKCC	GRCh37	1	78432759	78432759	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200979131		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	110	454	0	ENST00000370768.2:c.317A>G	p.Lys106Arg	p.K106R	ENST00000370768	NM_003902.3	106	aAa/aGa																																																																														
RIT1	0	MSKCC	GRCh37	1	155880515	155880515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	159	627	1	ENST00000368323.3:c.38G>T	p.Ser13Ile	p.S13I	ENST00000368323	NM_006912.5	13	aGc/aTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	109	604	3	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	55	359	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
WT1	0	MSKCC	GRCh37	11	32456626	32456626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	91	323	0	ENST00000332351.3:c.266G>A	p.Gly89Asp	p.G89D	ENST00000332351	NM_024426.4	89	gGc/gAc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197281	94197282	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	49	374	0	ENST00000323929.3:c.1222dup	p.Thr408AsnfsTer49	p.T408Nfs*49	ENST00000323929	NM_005591.3	408	aca/aAca																																																																														
PGR	0	MSKCC	GRCh37	11	100998709	100998709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	181	776	0	ENST00000325455.5:c.1093C>T	p.Pro365Ser	p.P365S	ENST00000325455	NM_001202474.3	365	Ccc/Tcc																																																																														
ATM	0	MSKCC	GRCh37	11	108205757	108205757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	82	474	0	ENST00000278616.4:c.8072G>A	p.Arg2691His	p.R2691H	ENST00000278616	NM_000051.3	2691	cGc/cAc																																																																														
RAB35	0	MSKCC	GRCh37	12	120546244	120546244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	169	695	1	ENST00000229340.5:c.80G>A	p.Arg27His	p.R27H	ENST00000229340	NM_006861.6	27	cGt/cAt																																																																														
PRKD1	0	MSKCC	GRCh37	14	30046602	30046602	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	107	575	0	ENST00000331968.5:c.2581A>G	p.Thr861Ala	p.T861A	ENST00000331968	NM_002742.2	861	Acc/Gcc																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872461	35872461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	136	510	1	ENST00000216797.5:c.442del	p.Leu148TyrfsTer16	p.L148Yfs*16	ENST00000216797	NM_020529.2	148	Cta/ta																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	164	768	1	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																														
BLM	0	MSKCC	GRCh37	15	91306293	91306294	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	84	465	1	ENST00000355112.3:c.1986dup	p.Phe663IlefsTer5	p.F663Ifs*5	ENST00000355112	NM_000057.2	660	-/A																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	112	652	2	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																														
NTHL1	0	MSKCC	GRCh37	16	2094711	2094711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	191	872	1	ENST00000219066.1:c.469C>T	p.Arg157Trp	p.R157W	ENST00000219066	NM_002528.5	157	Cgg/Tgg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858637	9858637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	105	437	0	ENST00000330684.3:c.2764G>A	p.Ala922Thr	p.A922T	ENST00000330684	NM_001134407.1	922	Gct/Act																																																																														
MAPK3	0	MSKCC	GRCh37	16	30128304	30128304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	63	691	0	ENST00000263025.4:c.928A>G	p.Met310Val	p.M310V	ENST00000263025	NM_002746.2	310	Atg/Gtg																																																																														
CYLD	0	MSKCC	GRCh37	16	50825518	50825518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	84	528	1	ENST00000398568.2:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000398568	NM_001042412.1	717	Gaa/Aaa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	22	293	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15961294	15961294	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	50	555	1	ENST00000268712.3:c.6095del	p.Pro2032LeufsTer17	p.P2032Lfs*17	ENST00000268712	NM_006311.3	2032	cCt/ct																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	57	515	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16047005	16047005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	78	455	0	ENST00000268712.3:c.1088G>T	p.Gly363Val	p.G363V	ENST00000268712	NM_006311.3	363	gGg/gTg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16052795	16052795	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	66	458	0	ENST00000268712.3:c.879del	p.Phe293LeufsTer33	p.F293Lfs*33	ENST00000268712	NM_006311.3	293	ttT/tt																																																																														
NF1	0	MSKCC	GRCh37	17	29683546	29683546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	82	545	0	ENST00000358273.4:c.7684G>T	p.Gly2562Trp	p.G2562W	ENST00000358273	NM_001042492.2	2562	Ggg/Tgg																																																																														
RARA	5914	MSKCC	GRCh37	17	38512401	38512402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs745553450		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	50	635	2	ENST00000254066.5:c.1319dup	p.Pro441AlafsTer5	p.P441Afs*5	ENST00000254066	NM_000964.3	438	gcc/gCcc																																																																														
EZH1	0	MSKCC	GRCh37	17	40858095	40858095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	218	773	0	ENST00000428826.2:c.1769G>T	p.Gly590Val	p.G590V	ENST00000428826		590	gGg/gTg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59760676	59760676	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	35	617	0	ENST00000259008.2:c.3731T>G	p.Met1244Arg	p.M1244R	ENST00000259008	NM_032043.2	1244	aTg/aGg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	155	555	2	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223239	5223239	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	202	752	3	ENST00000357368.4:c.2564del	p.Pro855ArgfsTer67	p.P855Rfs*67	ENST00000357368	NM_002850.3	855	cCg/cg																																																																														
CCNE1	0	MSKCC	GRCh37	19	30303663	30303663	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	164	618	0	ENST00000262643.3:c.91A>G	p.Arg31Gly	p.R31G	ENST00000262643	NM_001238.2	31	Agg/Ggg																																																																														
CIC	23152	MSKCC	GRCh37	19	42791591	42791592	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	160	561	0	ENST00000575354.2:c.576dup	p.Asn193GlnfsTer122	p.N193Qfs*122	ENST00000575354	NM_015125.3	191	agc/agCc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	236	499	7	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
REL	0	MSKCC	GRCh37	2	61147602	61147602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	11	55	0	ENST00000295025.8:c.1007C>A	p.Ala336Asp	p.A336D	ENST00000295025	NM_002908.2	336	gCt/gAt																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	127	763	1	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																														
SETD2	0	MSKCC	GRCh37	3	47164218	47164218	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	72	420	0	ENST00000409792.3:c.1908delT	p.Phe636LeufsTer6	p.F636Lfs*6	ENST00000409792	NM_014159.6	636	ttT/tt																																																																														
MST1R	0	MSKCC	GRCh37	3	49940111	49940111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	122	653	3	ENST00000296474.3:c.932C>G	p.Ala311Gly	p.A311G	ENST00000296474	NM_002447.2	311	gCc/gGc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52595976	52595977	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	93	410	0	ENST00000394830.3:c.3938dup	p.Ser1315ValfsTer26	p.S1315Vfs*26	ENST00000394830	NM_018313.4	1313	cca/ccCa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71021754	71021754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	95	453	0	ENST00000318789.4:c.1604C>T	p.Thr535Ile	p.T535I	ENST00000318789	NM_032682.5	535	aCa/aTa																																																																														
DROSHA	0	MSKCC	GRCh37	5	31508780	31508780	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	178	698	0	ENST00000344624.3:c.1535delA	p.Lys512ArgfsTer19	p.K512Rfs*19	ENST00000344624		512	aAg/ag																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	90	579	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175945	112175945	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	61	274	0	ENST00000257430.4:c.4654G>T	p.Glu1552Ter	p.E1552*	ENST00000257430	NM_000038.5	1552	Gag/Tag																																																																														
CSF1R	0	MSKCC	GRCh37	5	149433745	149433745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	158	772	0	ENST00000286301.3:c.2806G>A	p.Gly936Ser	p.G936S	ENST00000286301	NM_005211.3	936	Ggc/Agc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	127	288	0	ENST00000412585.2:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	82	548	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TEK	0	MSKCC	GRCh37	9	27213579	27213579	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	114	599	0	ENST00000380036.4:c.2975A>T	p.Tyr992Phe	p.Y992F	ENST00000380036	NM_000459.3	992	tAt/tTt																																																																														
NTRK2	0	MSKCC	GRCh37	9	87635191	87635191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	134	561	3	ENST00000277120.3:c.2243C>T	p.Thr748Met	p.T748M	ENST00000277120		748	aCg/aTg																																																																														
RBM10	0	MSKCC	GRCh37	X	47041561	47041561	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0026908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	132	332	0	ENST00000329236.7:c.1552T>C	p.Tyr518His	p.Y518H	ENST00000329236	NM_001204466.1	518	Tat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1239	434	655	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
IGF1R	0	MSKCC	GRCh37	15	99454555	99454555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61740877		P-0026909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	95	498	0	ENST00000268035.6:c.1474G>A	p.Val492Ile	p.V492I	ENST00000268035	NM_000875.3	492	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	65	284	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																														
STAT5A	0	MSKCC	GRCh37	17	40458299	40458299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	102	628	1	ENST00000345506.4:c.1514C>T	p.Pro505Leu	p.P505L	ENST00000345506	NM_003152.3	505	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	169	445	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	246	570	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171735	36171735	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	108	375	1	ENST00000300305.3:c.830del	p.Pro277HisfsTer34	p.P277Hfs*34	ENST00000300305		277	cCa/ca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49447282	49447289	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAGGGC	TTCAGGGC	-			P-0026916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	108	476	0	ENST00000301067.7:c.809_816del	p.Cys270LeufsTer13	p.C270Lfs*13	ENST00000301067	NM_003482.3	270	tGCCCTGAA/t																																																																														
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	217	589	1	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023006	27023006	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	75	53	0	ENST00000324856.7:c.112G>T	p.Glu38Ter	p.E38*	ENST00000324856	NM_006015.4	38	Gag/Tag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916926	178916937	+	inframe_deletion	In_Frame_Del	DEL	GTAGGCAACCGT	GTAGGCAACCGT	-			P-0026917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	61	511	0	ENST00000263967.3:c.314_325del	p.Val105_Arg108del	p.V105_R108del	ENST00000263967	NM_006218.2	105	GTAGGCAACCGT/-																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748389	43748389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	38	648	0	ENST00000382044.4:c.2417G>C	p.Arg806Thr	p.R806T	ENST00000382044	NM_001141980.1	806	aGa/aCa																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66777399	66777399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	34	640	0	ENST00000307102.5:c.765G>C	p.Glu255Asp	p.E255D	ENST00000307102	NM_002755.3	255	gaG/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	85	524	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	70	436	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	92	372	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66233140	66233140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	64	447	0	ENST00000273854.3:c.1859G>A	p.Arg620Gln	p.R620Q	ENST00000273854	NM_004439.5	620	cGg/cAg																																																																														
ATM	0	MSKCC	GRCh37	11	108121762	108121762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	79	485	0	ENST00000278616.4:c.1570T>C	p.Trp524Arg	p.W524R	ENST00000278616	NM_000051.3	524	Tgg/Cgg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99482477	99482477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	111	604	0	ENST00000268035.6:c.3345G>A	p.Met1115Ile	p.M1115I	ENST00000268035	NM_000875.3	1115	atG/atA																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533838	63533838	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	115	548	0	ENST00000307078.5:c.1316T>C	p.Leu439Pro	p.L439P	ENST00000307078	NM_004655.3	439	cTg/cCg																																																																														
APC	0	MSKCC	GRCh37	5	112157642	112157643	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	81	538	0	ENST00000257430.4:c.1365dup	p.Leu456ThrfsTer4	p.L456Tfs*4	ENST00000257430	NM_000038.5	454	-/A																																																																														
RBM10	0	MSKCC	GRCh37	X	47041379	47041379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	103	755	1	ENST00000329236.7:c.1489G>A	p.Asp497Asn	p.D497N	ENST00000329236	NM_001204466.1	497	Gat/Aat																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	34	621	0	ENST00000263967.3:c.1636C>G	p.Gln546Glu	p.Q546E	ENST00000263967	NM_006218.2	546	Cag/Gag																																																																														
RBM10	0	MSKCC	GRCh37	X	47006898	47006898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	159	706	0	ENST00000329236.7:c.17+1G>T		p.X6_splice	ENST00000329236	NM_001204466.1	6																																																																															
PTEN	0	MSKCC	GRCh37	10	89720876	89720876	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	28	305	0	ENST00000371953.3:c.1026+1G>A		p.X342_splice	ENST00000371953	NM_000314.4	342																																																																															
POLE	0	MSKCC	GRCh37	12	133219552	133219552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	121	558	0	ENST00000320574.5:c.4582G>C	p.Ala1528Pro	p.A1528P	ENST00000320574	NM_006231.2	1528	Gcc/Ccc																																																																														
SETD2	0	MSKCC	GRCh37	3	47162374	47162374	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	82	316	0	ENST00000409792.3:c.3752C>A	p.Ser1251Ter	p.S1251*	ENST00000409792	NM_014159.6	1251	tCa/tAa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450244	50450244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	93	404	0	ENST00000331340.3:c.428G>C	p.Arg143Pro	p.R143P	ENST00000331340	NM_006060.4	143	cGg/cCg																																																																														
ABL1	0	MSKCC	GRCh37	9	133730188	133730188	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0026932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	119	468	0	ENST00000318560.5:c.254G>T	p.Gly85Val	p.G85V	ENST00000318560	NM_005157.4	85	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	494	644	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	38	271	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9916205	9916205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	161	500	1	ENST00000330684.3:c.2084G>A	p.Arg695Gln	p.R695Q	ENST00000330684	NM_001134407.1	695	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112174949	112174949	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	135	222	0	ENST00000257430.4:c.3658del	p.Thr1220HisfsTer45	p.T1220Hfs*45	ENST00000257430	NM_000038.5	1220	Aca/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	48	493	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	87	541	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	53	509	0	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																																																														
MAX	0	MSKCC	GRCh37	14	65560514	65560514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	95	392	0	ENST00000358664.4:c.83A>G	p.His28Arg	p.H28R	ENST00000358664	NM_002382.4	28	cAt/cGt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	76	535	3	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	75	431	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	24	159	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	46	442	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
BRD4	0	MSKCC	GRCh37	19	15366129	15366129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	62	412	1	ENST00000263377.2:c.2026C>T	p.Arg676Trp	p.R676W	ENST00000263377	NM_058243.2	676	Cgg/Tgg																																																																														
CIC	0	MSKCC	GRCh37	19	42791393	42791393	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	101	598	0	ENST00000575354.2:c.452+1G>A		p.X151_splice	ENST00000575354	NM_015125.3	151																																																																															
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	107	628	4	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
STK40	0	MSKCC	GRCh37	1	36814324	36814324	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	81	528	0	ENST00000373129.3:c.716A>G	p.Tyr239Cys	p.Y239C	ENST00000373129	NM_032017.1	239	tAc/tGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	66	600	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
MED12	0	MSKCC	GRCh37	X	70352727	70352727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	83	509	0	ENST00000374080.3:c.4448C>T	p.Ser1483Leu	p.S1483L	ENST00000374080		1483	tCg/tTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692809	89692809	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	90	282	1	ENST00000371953.3:c.293del	p.Leu98GlnfsTer15	p.L98Qfs*15	ENST00000371953	NM_000314.4	98	cTa/ca																																																																														
ERCC5	0	MSKCC	GRCh37	13	103519135	103519136	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	86	427	0	ENST00000355739.4:c.2477_2478del	p.Phe826Ter	p.F826*	ENST00000355739	NM_000123.3	825	TTt/t																																																																														
IGF1R	0	MSKCC	GRCh37	15	99454619	99454619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	100	573	0	ENST00000268035.6:c.1538G>A	p.Arg513Gln	p.R513Q	ENST00000268035	NM_000875.3	513	cGg/cAg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858351	9858351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	45	379	0	ENST00000330684.3:c.3050C>T	p.Ser1017Phe	p.S1017F	ENST00000330684	NM_001134407.1	1017	tCc/tTc																																																																														
DAXX	0	MSKCC	GRCh37	6	33287371	33287371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	44	429	0	ENST00000374542.5:c.1726C>A	p.Leu576Met	p.L576M	ENST00000374542	NM_001141970.1	576	Ctg/Atg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484152	8484152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	66	453	0	ENST00000356435.5:c.3380A>G	p.Gln1127Arg	p.Q1127R	ENST00000356435		1127	cAa/cGa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8733812	8733814	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	56	487	2	ENST00000356435.5:c.30_32del	p.Leu12del	p.L12del	ENST00000356435		10	ctGCTc/ctc																																																																														
TSC1	0	MSKCC	GRCh37	9	135778059	135778059	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	87	510	1	ENST00000298552.3:c.2324T>C	p.Leu775Pro	p.L775P	ENST00000298552	NM_001162426.1	775	cTc/cCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	154	480	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	242	804	1	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0026936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	190	626	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
TSC2	0	MSKCC	GRCh37	16	2134230	2134230	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148527903		P-0026944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	94	403	0	ENST00000219476.3:c.4007C>T	p.Ser1336Leu	p.S1336L	ENST00000219476	NM_000548.3	1336	tCg/tTg																																																																														
BAP1	0	MSKCC	GRCh37	3	52437795	52437795	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	109	497	0	ENST00000460680.1:c.1366del	p.Gln456ArgfsTer115	p.Q456Rfs*115	ENST00000460680	NM_004656.3	456	Cag/ag																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101911534	101911534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111426349		P-0026945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	103	418	0	ENST00000374994.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000374994	NM_004612.2	487	Cgg/Tgg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	132	500	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489564	56489564	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	127	454	0	ENST00000267101.3:c.2029A>G	p.Met677Val	p.M677V	ENST00000267101	NM_001982.3	677	Atg/Gtg																																																																														
MET	0	MSKCC	GRCh37	7	116339817	116339817	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	106	363	0	ENST00000397752.3:c.679A>G	p.Met227Val	p.M227V	ENST00000397752	NM_000245.2	227	Atg/Gtg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	2500	487	2	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47038563	47038563	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	81	472	0	ENST00000329236.7:c.493+1G>T		p.X165_splice	ENST00000329236	NM_001204466.1	165																																																																															
RB1	0	MSKCC	GRCh37	13	49037866	49037866	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0026954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	42	225	0	ENST00000267163.4:c.2107-1G>C		p.X703_splice	ENST00000267163	NM_000321.2	703																																																																															
TP53	7157	MSKCC	GRCh37	17	7578220	7578220	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	117	467	0	ENST00000269305.4:c.629del	p.Asn210ThrfsTer37	p.N210Tfs*37	ENST00000269305	NM_001126112.2	210	aAc/ac																																																																														
TRAF7	0	MSKCC	GRCh37	16	2223928	2223928	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	63	415	0	ENST00000326181.6:c.1142A>T	p.Asp381Val	p.D381V	ENST00000326181	NM_032271.2	381	gAc/gTc																																																																														
TSC1	0	MSKCC	GRCh37	9	135786417	135786418	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0026954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	55	437	0	ENST00000298552.3:c.1112_1113del	p.His371ProfsTer4	p.H371Pfs*4	ENST00000298552	NM_001162426.1	371	cAC/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	199	481	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	101	200	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																														
RET	0	MSKCC	GRCh37	10	43606814	43606814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	164	594	0	ENST00000355710.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000355710	NM_020975.4	475	Cgg/Tgg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710677	114710678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	135	374	0	ENST00000543371.1:c.164dupA	p.Asn55LysfsTer42	p.N55Kfs*42	ENST00000543371	NM_001198531.1	54	-/A																																																																														
ATM	0	MSKCC	GRCh37	11	108198486	108198486	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	171	287	0	ENST00000278616.4:c.7089+1G>C		p.X2363_splice	ENST00000278616	NM_000051.3	2363																																																																															
JAK3	0	MSKCC	GRCh37	19	17945418	17945419	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	84	562	0	ENST00000458235.1:c.2311_2312del	p.Arg771SerfsTer5	p.R771Sfs*5	ENST00000458235	NM_000215.3	771	CGa/a																																																																														
APC	0	MSKCC	GRCh37	5	112176200	112176200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	28	339	0	ENST00000257430.4:c.4909G>T	p.Asp1637Tyr	p.D1637Y	ENST00000257430	NM_000038.5	1637	Gat/Tat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	64	270	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	46	199	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851315	156851315	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62640939		P-0026957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	82	504	1	ENST00000524377.1:c.2272G>A	p.Ala758Thr	p.A758T	ENST00000524377	NM_002529.3	758	Gcc/Acc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211360	36211360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	136	617	0	ENST00000222270.7:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000222270	NM_014727.1	371	Gaa/Aaa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1961351	1961351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	115	462	0	ENST00000382891.5:c.3139C>T	p.Pro1047Ser	p.P1047S	ENST00000382891	NM_133335.3	1047	Ccc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7577587	7577587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	371	498	0	ENST00000269305.4:c.694del	p.Ile232SerfsTer15	p.I232Sfs*15	ENST00000269305	NM_001126112.2	232	Atc/tc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346277	89346277	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	49	250	0	ENST00000301030.4:c.6673A>C	p.Thr2225Pro	p.T2225P	ENST00000301030	NM_001256183.1	2225	Acg/Ccg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	204	426	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	133	341	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
WT1	0	MSKCC	GRCh37	11	32421590	32421590	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	100	324	0	ENST00000332351.3:c.1002C>A	p.Asn334Lys	p.N334K	ENST00000332351	NM_024426.4	334	aaC/aaA																																																																														
PRKD1	0	MSKCC	GRCh37	14	30047528	30047528	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	70	286	0	ENST00000331968.5:c.2473A>T	p.Arg825Ter	p.R825*	ENST00000331968	NM_002742.2	825	Aga/Tga																																																																														
AKT1	0	MSKCC	GRCh37	14	105242036	105242046	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAGTTGTCA	CTGAGTTGTCA	-			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	43	505	0	ENST00000349310.3:c.378_388del	p.Ser126ArgfsTer3	p.S126Rfs*3	ENST00000349310	NM_001014432.1	126	agTGACAACTCAGgg/aggg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678587	88678587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	17	223	0	ENST00000360948.2:c.949C>A	p.Leu317Met	p.L317M	ENST00000360948	NM_001012338.2	317	Ctg/Atg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680793	88680793	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	44	403	0	ENST00000360948.2:c.465-1G>T		p.X155_splice	ENST00000360948	NM_001012338.2	155																																																																															
PAK7	0	MSKCC	GRCh37	20	9561364	9561364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	61	280	0	ENST00000353224.5:c.418G>T	p.Asp140Tyr	p.D140Y	ENST00000353224	NM_177990.2	140	Gac/Tac																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468458	89468458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	39	241	0	ENST00000336596.2:c.1992G>T	p.Arg664Ser	p.R664S	ENST00000336596	NM_005233.5	664	agG/agT																																																																														
MED12	0	MSKCC	GRCh37	X	70344164	70344164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	46	356	0	ENST00000374080.3:c.1900C>T	p.Pro634Ser	p.P634S	ENST00000374080		634	Ccc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	71	321	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	46	310	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	53	337	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	49	496	1	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	43	293	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	52	351	1	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	49	337	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	90	606	2	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																														
RNF43	0	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	166	503	2	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
VEGFA	0	MSKCC	GRCh37	6	43748552	43748552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	70	365	0	ENST00000523873.1:c.506C>T	p.Ala169Val	p.A169V	ENST00000523873		169	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	16	68	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952088	178952088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	45	276	0	ENST00000263967.3:c.3143A>G	p.His1048Arg	p.H1048R	ENST00000263967	NM_006218.2	1048	cAt/cGt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31017724	31017724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	45	363	0	ENST00000375687.4:c.586G>A	p.Asp196Asn	p.D196N	ENST00000375687	NM_015338.5	196	Gat/Aat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991706	72991706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	53	191	0	ENST00000268489.5:c.2339C>T	p.Ala780Val	p.A780V	ENST00000268489	NM_006885.3	780	gCg/gTg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100302	157100302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	23	262	0	ENST00000346085.5:c.1243delG	p.Ala415ProfsTer15	p.A415Pfs*15	ENST00000346085	NM_020732.3	413	tcG/tc																																																																														
ARID2	0	MSKCC	GRCh37	12	46243878	46243878	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	46	227	0	ENST00000334344.6:c.1972C>T	p.Gln658Ter	p.Q658*	ENST00000334344	NM_152641.2	658	Caa/Taa																																																																														
FAT1	0	MSKCC	GRCh37	4	187538941	187538941	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	58	305	2	ENST00000441802.2:c.8799delA	p.Gly2934ValfsTer3	p.G2934Vfs*3	ENST00000441802	NM_005245.3	2933	caA/ca																																																																														
GNAS	0	MSKCC	GRCh37	20	57466824	57466824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	66	334	0	ENST00000371085.3:c.43G>A	p.Glu15Lys	p.E15K	ENST00000371085	NM_000516.4	15	Gag/Aag																																																																														
B2M	0	MSKCC	GRCh37	15	45007806	45007807	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	78	327	0	ENST00000558401.1:c.253_254del	p.Leu85ValfsTer4	p.L85Vfs*4	ENST00000558401	NM_004048.2	85	TTg/g																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	74	567	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	113	561	3	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																														
RRAGC	0	MSKCC	GRCh37	1	39325282	39325282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	65	395	0	ENST00000373001.3:c.37G>A	p.Ala13Thr	p.A13T	ENST00000373001	NM_022157.3	13	Gcc/Acc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444987	49444987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	82	419	2	ENST00000301067.7:c.2479del	p.Gln827AsnfsTer103	p.Q827Nfs*103	ENST00000301067	NM_003482.3	827	Caa/aa																																																																														
MED12	0	MSKCC	GRCh37	X	70343445	70343445	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	58	318	0	ENST00000374080.3:c.1619G>A	p.Arg540His	p.R540H	ENST00000374080		540	cGt/cAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087536	27087536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	155	487	0	ENST00000324856.7:c.2110G>A	p.Ala704Thr	p.A704T	ENST00000324856	NM_006015.4	704	Gcc/Acc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105988	27105988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	53	342	0	ENST00000324856.7:c.5599C>T	p.Pro1867Ser	p.P1867S	ENST00000324856	NM_006015.4	1867	Cct/Tct																																																																														
GATA3	0	MSKCC	GRCh37	10	8106063	8106063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	44	452	0	ENST00000346208.3:c.883G>A	p.Gly295Arg	p.G295R	ENST00000346208		295	Gga/Aga																																																																														
WT1	0	MSKCC	GRCh37	11	32456824	32456824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	57	521	1	ENST00000332351.3:c.68G>A	p.Gly23Glu	p.G23E	ENST00000332351	NM_024426.4	23	gGg/gAg																																																																														
PGR	0	MSKCC	GRCh37	11	100922177	100922177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	34	355	0	ENST00000325455.5:c.2335G>T	p.Ala779Ser	p.A779S	ENST00000325455	NM_001202474.3	779	Gca/Tca																																																																														
ATM	0	MSKCC	GRCh37	11	108117840	108117841	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	32	247	1	ENST00000278616.4:c.1051_1052delinsTT	p.Asp351Phe	p.D351F	ENST00000278616	NM_000051.3	351	GAt/TTt																																																																														
ATM	0	MSKCC	GRCh37	11	108192057	108192057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	78	361	1	ENST00000278616.4:c.6482G>A	p.Arg2161His	p.R2161H	ENST00000278616	NM_000051.3	2161	cGc/cAc																																																																														
FLT1	0	MSKCC	GRCh37	13	28893647	28893647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	56	324	0	ENST00000282397.4:c.3199G>A	p.Ala1067Thr	p.A1067T	ENST00000282397	NM_002019.4	1067	Gct/Act																																																																														
FOXO1	0	MSKCC	GRCh37	13	41133968	41133968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	79	366	0	ENST00000379561.5:c.1660C>T	p.Arg554Cys	p.R554C	ENST00000379561	NM_002015.3	554	Cgc/Tgc																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66774177	66774177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	111	744	0	ENST00000307102.5:c.653C>A	p.Ser218Tyr	p.S218Y	ENST00000307102	NM_002755.3	218	tCc/tAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993602	72993602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	56	389	0	ENST00000268489.5:c.443G>A	p.Ser148Asn	p.S148N	ENST00000268489	NM_006885.3	148	aGc/aAc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266124	198266124	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	54	259	0	ENST00000335508.6:c.2496G>T	p.Gln832His	p.Q832H	ENST00000335508	NM_012433.2	832	caG/caT																																																																														
CASP8	0	MSKCC	GRCh37	2	202149789	202149789	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	83	390	0	ENST00000358485.4:c.1230A>C	p.Lys410Asn	p.K410N	ENST00000358485	NM_001080125.1	410	aaA/aaC																																																																														
ASXL1	0	MSKCC	GRCh37	20	31017142	31017142	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	60	228	0	ENST00000375687.4:c.473C>T	p.Ala158Val	p.A158V	ENST00000375687	NM_015338.5	158	gCg/gTg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259387	36259387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	95	388	0	ENST00000300305.3:c.104G>A	p.Ser35Asn	p.S35N	ENST00000300305		35	aGc/aAc																																																																														
EP300	2033	MSKCC	GRCh37	22	41525977	41525977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	75	395	0	ENST00000263253.7:c.1256del	p.Asn419MetfsTer12	p.N419Mfs*12	ENST00000263253	NM_001429.3	418	Aaa/aa																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665540	138665540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	42	289	0	ENST00000330315.3:c.25G>A	p.Glu9Lys	p.E9K	ENST00000330315	NM_023067.3	9	Gag/Aag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928284	178928285	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	63	313	0	ENST00000263967.3:c.1470_1471del	p.Val491AspfsTer2	p.V491Dfs*2	ENST00000263967	NM_006218.2	490	tcAGtg/tctg																																																																														
MSH3	0	MSKCC	GRCh37	5	80057422	80057423	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	60	279	0	ENST00000265081.6:c.1824dup	p.Gly609TrpfsTer9	p.G609Wfs*9	ENST00000265081	NM_002439.4	607	-/T																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982045	93982045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	47	272	0	ENST00000369303.4:c.1420A>G	p.Thr474Ala	p.T474A	ENST00000369303	NM_004440.3	474	Aca/Gca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465503	8465503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	50	400	1	ENST00000356435.5:c.3677T>C	p.Val1226Ala	p.V1226A	ENST00000356435		1226	gTc/gCc																																																																														
PAX5	0	MSKCC	GRCh37	9	37002660	37002660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	69	322	0	ENST00000358127.4:c.589C>T	p.Arg197Cys	p.R197C	ENST00000358127	NM_001280556.1	197	Cgc/Tgc																																																																														
ABL1	0	MSKCC	GRCh37	9	133759980	133759980	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	115	673	1	ENST00000318560.5:c.2303G>T	p.Gly768Val	p.G768V	ENST00000318560	NM_005157.4	768	gGg/gTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63411476	63411476	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	63	604	0	ENST00000330258.3:c.1691T>C	p.Ile564Thr	p.I564T	ENST00000330258	NM_152424.3	564	aTc/aCc																																																																														
MED12	0	MSKCC	GRCh37	X	70344934	70344934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	63	486	1	ENST00000374080.3:c.2164C>A	p.Leu722Ile	p.L722I	ENST00000374080		722	Ctt/Att																																																																														
ATRX	0	MSKCC	GRCh37	X	76938395	76938395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	89	461	0	ENST00000373344.5:c.2353A>G	p.Thr785Ala	p.T785A	ENST00000373344	NM_000489.3	785	Aca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	65	470	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0026963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	40	340	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139400023	139400023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	45	656	0	ENST00000277541.6:c.4325del	p.Pro1442ArgfsTer3	p.P1442Rfs*3	ENST00000277541	NM_017617.3	1442	cCg/cg																																																																														
TP53	0	MSKCC	GRCh37	17	7577525	7577548	+	inframe_deletion	In_Frame_Del	DEL	GAGGATGGGCCTCCGGTTCATGCC	GAGGATGGGCCTCCGGTTCATGCC	-			P-0026882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	207	671	0	ENST00000269305.4:c.733_756del	p.Gly245_Leu252del	p.G245_L252del	ENST00000269305	NM_001126112.2	245	GGCATGAACCGGAGGCCCATCCTC/-																																																																														
AMER1	0	MSKCC	GRCh37	X	63411440	63411441	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0026882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	30	629	0	ENST00000330258.3:c.1726_1727delinsAG	p.Glu576Arg	p.E576R	ENST00000330258	NM_152424.3	576	GAg/AGg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0026883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	229	519	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
RB1	0	MSKCC	GRCh37	13	48951171	48951171	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	46	391	0	ENST00000267163.4:c.1332+1G>A		p.X444_splice	ENST00000267163	NM_000321.2	444																																																																															
CDC73	0	MSKCC	GRCh37	1	193218910	193218910	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	88	308	0	ENST00000367435.3:c.1468C>T	p.Gln490Ter	p.Q490*	ENST00000367435	NM_024529.4	490	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578245	7578271	+	inframe_deletion	In_Frame_Del	DEL	GCAAATTTCCTTCCACTCGGATAAGAT	GCAAATTTCCTTCCACTCGGATAAGAT	-			P-0026883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	79	627	0	ENST00000269305.4:c.578_604del	p.His193_Leu201del	p.H193_L201del	ENST00000269305	NM_001126112.2	193	cATCTTATCCGAGTGGAAGGAAATTTGCgt/cgt																																																																														
PMS1	0	MSKCC	GRCh37	2	190728906	190728907	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0026883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	53	398	0	ENST00000441310.2:c.2295_2296del	p.His765GlnfsTer19	p.H765Qfs*19	ENST00000441310	NM_000534.4	765	cAT/c																																																																														
EPHA7	0	MSKCC	GRCh37	6	94067979	94067979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	118	249	0	ENST00000369303.4:c.983G>A	p.Cys328Tyr	p.C328Y	ENST00000369303	NM_004440.3	328	tGc/tAc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9784049	9784049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	105	659	0	ENST00000377346.4:c.2617G>A	p.Glu873Lys	p.E873K	ENST00000377346	NM_005026.3	873	Gag/Aag																																																																														
MTOR	0	MSKCC	GRCh37	1	11184649	11184649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	99	549	0	ENST00000361445.4:c.6568G>A	p.Glu2190Lys	p.E2190K	ENST00000361445	NM_004958.3	2190	Gaa/Aaa																																																																														
SPEN	0	MSKCC	GRCh37	1	16203049	16203049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	101	539	0	ENST00000375759.3:c.757C>T	p.Gln253Ter	p.Q253*	ENST00000375759	NM_015001.2	253	Cag/Tag																																																																														
SPEN	0	MSKCC	GRCh37	1	16257893	16257893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	106	612	0	ENST00000375759.3:c.5158G>A	p.Glu1720Lys	p.E1720K	ENST00000375759	NM_015001.2	1720	Gag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16260551	16260551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	132	588	0	ENST00000375759.3:c.7816G>A	p.Asp2606Asn	p.D2606N	ENST00000375759	NM_015001.2	2606	Gac/Aac																																																																														
SPEN	0	MSKCC	GRCh37	1	16264060	16264060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	156	848	0	ENST00000375759.3:c.10429G>A	p.Glu3477Lys	p.E3477K	ENST00000375759	NM_015001.2	3477	Gaa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087504	27087504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	303	676	0	ENST00000324856.7:c.2078G>A	p.Arg693Gln	p.R693Q	ENST00000324856	NM_006015.4	693	cGa/cAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099408	27099408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	147	707	1	ENST00000324856.7:c.3645G>A	p.Met1215Ile	p.M1215I	ENST00000324856	NM_006015.4	1215	atG/atA																																																																														
MPL	0	MSKCC	GRCh37	1	43812154	43812154	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	225	536	0	ENST00000372470.3:c.1019C>G	p.Thr340Arg	p.T340R	ENST00000372470	NM_005373.2	340	aCa/aGa																																																																														
JAK1	0	MSKCC	GRCh37	1	65304159	65304159	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	79	453	0	ENST00000342505.4:c.2956C>T	p.Gln986Ter	p.Q986*	ENST00000342505	NM_002227.2	986	Cag/Tag																																																																														
JAK1	0	MSKCC	GRCh37	1	65307188	65307188	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	94	534	0	ENST00000342505.4:c.2500C>T	p.Gln834Ter	p.Q834*	ENST00000342505	NM_002227.2	834	Cag/Tag																																																																														
NRAS	0	MSKCC	GRCh37	1	115258691	115258691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	142	330	0	ENST00000369535.4:c.91G>A	p.Glu31Lys	p.E31K	ENST00000369535	NM_002524.4	31	Gaa/Aaa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120467998	120467998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	143	751	2	ENST00000256646.2:c.4441G>A	p.Asp1481Asn	p.D1481N	ENST00000256646	NM_024408.3	1481	Gat/Aat																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120480519	120480519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	201	471	2	ENST00000256646.2:c.3298G>A	p.Val1100Met	p.V1100M	ENST00000256646	NM_024408.3	1100	Gtg/Atg																																																																														
DDR2	0	MSKCC	GRCh37	1	162745460	162745460	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	139	375	0	ENST00000367921.3:c.1875G>C	p.Glu625Asp	p.E625D	ENST00000367921	NM_006182.2	625	gaG/gaC																																																																														
DDR2	0	MSKCC	GRCh37	1	162745524	162745524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	212	533	0	ENST00000367921.3:c.1939G>A	p.Asp647Asn	p.D647N	ENST00000367921	NM_006182.2	647	Gat/Aat																																																																														
DDR2	0	MSKCC	GRCh37	1	162745985	162745985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	75	380	0	ENST00000367921.3:c.2108C>T	p.Ser703Phe	p.S703F	ENST00000367921	NM_006182.2	703	tCt/tTt																																																																														
CDC73	0	MSKCC	GRCh37	1	193094321	193094321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	65	426	0	ENST00000367435.3:c.211C>T	p.His71Tyr	p.H71Y	ENST00000367435	NM_024529.4	71	Cat/Tat																																																																														
FH	0	MSKCC	GRCh37	1	241667372	241667372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	92	607	0	ENST00000366560.3:c.1078G>A	p.Glu360Lys	p.E360K	ENST00000366560	NM_000143.3	360	Gaa/Aaa																																																																														
RET	0	MSKCC	GRCh37	10	43615593	43615593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	120	641	0	ENST00000355710.3:c.2672C>T	p.Ser891Leu	p.S891L	ENST00000355710	NM_020975.4	891	tCg/tTg																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88651883	88651883	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	168	447	0	ENST00000372037.3:c.231-1G>C		p.X77_splice	ENST00000372037	NM_004329.2	77																																																																															
PTEN	0	MSKCC	GRCh37	10	89692918	89692918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	78	559	0	ENST00000371953.3:c.402G>A	p.Met134Ile	p.M134I	ENST00000371953	NM_000314.4	134	atG/atA																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710987	114710987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	72	514	1	ENST00000543371.1:c.211C>T	p.Arg71Cys	p.R71C	ENST00000543371	NM_001198531.1	71	Cgc/Tgc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911512	114911512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	66	390	0	ENST00000543371.1:c.1030G>A	p.Glu344Lys	p.E344K	ENST00000543371	NM_001198531.1	344	Gaa/Aaa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123244999	123244999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150015885		P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	123	616	1	ENST00000358487.5:c.2105C>T	p.Ser702Leu	p.S702L	ENST00000358487	NM_000141.4	702	tCg/tTg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123247543	123247543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	106	663	1	ENST00000358487.5:c.1948G>A	p.Asp650Asn	p.D650N	ENST00000358487	NM_000141.4	650	Gat/Aat																																																																														
ATM	0	MSKCC	GRCh37	11	108121744	108121744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	80	552	0	ENST00000278616.4:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000278616	NM_000051.3	518	Gag/Aag																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343273	118343273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	61	332	0	ENST00000534358.1:c.1399C>T	p.Gln467Ter	p.Q467*	ENST00000534358	NM_005933.3	467	Cag/Tag																																																																														
KMT2A	0	MSKCC	GRCh37	11	118380677	118380677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	152	478	0	ENST00000534358.1:c.10915G>A	p.Glu3639Lys	p.E3639K	ENST00000534358	NM_005933.3	3639	Gaa/Aaa																																																																														
CBL	0	MSKCC	GRCh37	11	119155695	119155695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	95	473	0	ENST00000264033.4:c.1448C>T	p.Ser483Phe	p.S483F	ENST00000264033	NM_005188.3	483	tCt/tTt																																																																														
CBL	0	MSKCC	GRCh37	11	119170291	119170291	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	146	318	0	ENST00000264033.4:c.2521C>T	p.Gln841Ter	p.Q841*	ENST00000264033	NM_005188.3	841	Cag/Tag																																																																														
CHEK1	0	MSKCC	GRCh37	11	125523707	125523707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	134	407	0	ENST00000428830.2:c.1300G>C	p.Asp434His	p.D434H	ENST00000428830	NM_001114121.2	434	Gat/Cat																																																																														
KDM5A	0	MSKCC	GRCh37	12	416910	416910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	95	470	0	ENST00000399788.2:c.3640C>T	p.Leu1214Phe	p.L1214F	ENST00000399788	NM_001042603.1	1214	Ctt/Ttt																																																																														
KDM5A	0	MSKCC	GRCh37	12	417122	417122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	64	354	0	ENST00000399788.2:c.3428C>T	p.Ser1143Phe	p.S1143F	ENST00000399788	NM_001042603.1	1143	tCt/tTt																																																																														
KDM5A	0	MSKCC	GRCh37	12	422224	422224	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	89	569	0	ENST00000399788.2:c.3034C>T	p.Gln1012Ter	p.Q1012*	ENST00000399788	NM_001042603.1	1012	Cag/Tag																																																																														
ETV6	0	MSKCC	GRCh37	12	12006424	12006424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	114	540	0	ENST00000396373.4:c.392C>T	p.Ser131Leu	p.S131L	ENST00000396373	NM_001987.4	131	tCa/tTa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18658367	18658367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	59	447	0	ENST00000266497.5:c.3172C>T	p.His1058Tyr	p.H1058Y	ENST00000266497		1058	Cat/Tat																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18793483	18793483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	45	317	0	ENST00000266497.5:c.4180G>A	p.Glu1394Lys	p.E1394K	ENST00000266497		1394	Gaa/Aaa																																																																														
ARID2	0	MSKCC	GRCh37	12	46230613	46230613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	100	527	0	ENST00000334344.6:c.862C>T	p.Gln288Ter	p.Q288*	ENST00000334344	NM_152641.2	288	Cag/Tag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478821	56478821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	163	692	1	ENST00000267101.3:c.277G>A	p.Glu93Lys	p.E93K	ENST00000267101	NM_001982.3	93	Gaa/Aaa																																																																														
GLI1	0	MSKCC	GRCh37	12	57858567	57858567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	142	749	1	ENST00000228682.2:c.305C>T	p.Ser102Leu	p.S102L	ENST00000228682	NM_005269.2	102	tCa/tTa																																																																														
CDK4	0	MSKCC	GRCh37	12	58142997	58142997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	149	749	0	ENST00000257904.6:c.787G>A	p.Glu263Lys	p.E263K	ENST00000257904	NM_000075.3	263	Gag/Aag																																																																														
MDM2	0	MSKCC	GRCh37	12	69229711	69229711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	36	422	0	ENST00000462284.1:c.787G>A	p.Glu263Lys	p.E263K	ENST00000462284	NM_002392.5	263	Gaa/Aaa																																																																														
CDK8	0	MSKCC	GRCh37	13	26927938	26927938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	135	466	0	ENST00000381527.3:c.377G>A	p.Gly126Glu	p.G126E	ENST00000381527	NM_001260.1	126	gGa/gAa																																																																														
FOXO1	0	MSKCC	GRCh37	13	41240285	41240285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	121	484	1	ENST00000379561.5:c.65C>T	p.Ser22Leu	p.S22L	ENST00000379561	NM_002015.3	22	tCg/tTg																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281386	49281386	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139045217		P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	320	781	0	ENST00000282018.3:c.433C>T	p.Arg145Trp	p.R145W	ENST00000282018	NM_020377.2	145	Cgg/Tgg																																																																														
DIS3	0	MSKCC	GRCh37	13	73346883	73346883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	107	330	1	ENST00000377767.4:c.1334C>T	p.Ser445Leu	p.S445L	ENST00000377767	NM_014953.3	445	tCa/tTa																																																																														
DIS3	0	MSKCC	GRCh37	13	73346932	73346932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	48	383	1	ENST00000377767.4:c.1285G>A	p.Glu429Lys	p.E429K	ENST00000377767	NM_014953.3	429	Gaa/Aaa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103527672	103527672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	44	262	0	ENST00000355739.4:c.2980G>A	p.Asp994Asn	p.D994N	ENST00000355739	NM_000123.3	994	Gat/Aat																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061532	38061532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	189	308	0	ENST00000250448.2:c.457G>A	p.Ala153Thr	p.A153T	ENST00000250448	NM_004496.3	153	Gcg/Acg																																																																														
RAD51B	0	MSKCC	GRCh37	14	68331767	68331767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	85	467	0	ENST00000487270.1:c.363G>A	p.Met121Ile	p.M121I	ENST00000487270	NM_133509.3	121	atG/atA																																																																														
RAD51B	0	MSKCC	GRCh37	14	68352593	68352593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	58	362	0	ENST00000487270.1:c.460G>A	p.Glu154Lys	p.E154K	ENST00000487270	NM_133509.3	154	Gaa/Aaa																																																																														
DICER1	0	MSKCC	GRCh37	14	95574303	95574303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	166	388	0	ENST00000343455.3:c.2564C>T	p.Ser855Leu	p.S855L	ENST00000343455	NM_177438.2	855	tCa/tTa																																																																														
DICER1	0	MSKCC	GRCh37	14	95574663	95574663	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	125	302	0	ENST00000343455.3:c.2434C>G	p.Gln812Glu	p.Q812E	ENST00000343455	NM_177438.2	812	Cag/Gag																																																																														
DICER1	0	MSKCC	GRCh37	14	95582900	95582900	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	73	415	0	ENST00000343455.3:c.1642C>T	p.Gln548Ter	p.Q548*	ENST00000343455	NM_177438.2	548	Caa/Taa																																																																														
MGA	0	MSKCC	GRCh37	15	42003545	42003545	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	65	398	0	ENST00000219905.7:c.3082C>T	p.Gln1028Ter	p.Q1028*	ENST00000219905	NM_001164273.1	1028	Caa/Taa																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748474	43748474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	263	718	1	ENST00000382044.4:c.2332G>A	p.Glu778Lys	p.E778K	ENST00000382044	NM_001141980.1	778	Gaa/Aaa																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43783907	43783907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	132	690	2	ENST00000382044.4:c.331C>T	p.Gln111Ter	p.Q111*	ENST00000382044	NM_001141980.1	111	Cag/Tag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43784619	43784619	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	86	614	0	ENST00000382044.4:c.55C>T	p.Gln19Ter	p.Q19*	ENST00000382044	NM_001141980.1	19	Cag/Tag																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727501	66727501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	115	580	1	ENST00000307102.5:c.217G>A	p.Glu73Lys	p.E73K	ENST00000307102	NM_002755.3	73	Gag/Aag																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66777349	66777349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	103	569	3	ENST00000307102.5:c.715C>T	p.His239Tyr	p.H239Y	ENST00000307102	NM_002755.3	239	Cat/Tat																																																																														
BLM	0	MSKCC	GRCh37	15	91341500	91341500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	80	548	2	ENST00000355112.3:c.3291G>A	p.Met1097Ile	p.M1097I	ENST00000355112	NM_000057.2	1097	atG/atA																																																																														
IGF1R	0	MSKCC	GRCh37	15	99434793	99434793	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201529410		P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	248	607	2	ENST00000268035.6:c.880G>A	p.Glu294Lys	p.E294K	ENST00000268035	NM_000875.3	294	Gag/Aag																																																																														
IGF1R	0	MSKCC	GRCh37	15	99473531	99473531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	50	290	0	ENST00000268035.6:c.2953G>A	p.Asp985Asn	p.D985N	ENST00000268035	NM_000875.3	985	Gat/Aat																																																																														
CREBBP	0	MSKCC	GRCh37	16	3799647	3799647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	73	492	0	ENST00000262367.5:c.3817G>A	p.Asp1273Asn	p.D1273N	ENST00000262367	NM_004380.2	1273	Gat/Aat																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817911	3817911	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	73	392	0	ENST00000262367.5:c.3061-1G>A		p.X1021_splice	ENST00000262367	NM_004380.2	1021																																																																															
CREBBP	0	MSKCC	GRCh37	16	3824580	3824580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	191	353	0	ENST00000262367.5:c.2273C>T	p.Ser758Leu	p.S758L	ENST00000262367	NM_004380.2	758	tCa/tTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857021	9857021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	69	294	0	ENST00000330684.3:c.4380C>G	p.Ile1460Met	p.I1460M	ENST00000330684	NM_001134407.1	1460	atC/atG																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029128	14029128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	71	328	0	ENST00000311895.7:c.1339G>A	p.Glu447Lys	p.E447K	ENST00000311895	NM_005236.2	447	Gaa/Aaa																																																																														
CYLD	0	MSKCC	GRCh37	16	50811745	50811745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	66	390	0	ENST00000398568.2:c.1022C>T	p.Ser341Leu	p.S341L	ENST00000398568	NM_001042412.1	341	tCa/tTa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	181	444	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																														
CDH1	0	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	150	482	0	ENST00000261769.5:c.1565+1G>T		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																															
CDH1	0	MSKCC	GRCh37	16	68867307	68867307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	228	567	0	ENST00000261769.5:c.2554G>A	p.Glu852Lys	p.E852K	ENST00000261769	NM_004360.3	852	Gag/Aag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350486	89350486	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	181	787	1	ENST00000301030.4:c.2464C>T	p.Gln822Ter	p.Q822*	ENST00000301030	NM_001256183.1	822	Cag/Tag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350858	89350858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	147	720	0	ENST00000301030.4:c.2092G>A	p.Glu698Lys	p.E698K	ENST00000301030	NM_001256183.1	698	Gag/Aag																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7976471	7976471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	206	491	1	ENST00000319144.4:c.1921G>A	p.Asp641Asn	p.D641N	ENST00000319144	NM_001139.2	641	Gac/Aac																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7990631	7990631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	290	593	1	ENST00000319144.4:c.130G>A	p.Asp44Asn	p.D44N	ENST00000319144	NM_001139.2	44	Gac/Aac																																																																														
NCOR1	0	MSKCC	GRCh37	17	16004664	16004664	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	123	571	1	ENST00000268712.3:c.2590C>T	p.Gln864Ter	p.Q864*	ENST00000268712	NM_006311.3	864	Cag/Tag																																																																														
NCOR1	0	MSKCC	GRCh37	17	16004673	16004673	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	247	570	0	ENST00000268712.3:c.2581G>C	p.Val861Leu	p.V861L	ENST00000268712	NM_006311.3	861	Gtg/Ctg																																																																														
CDK12	0	MSKCC	GRCh37	17	37627496	37627496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	235	655	0	ENST00000447079.4:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000447079	NM_015083.1	471	Gag/Aag																																																																														
CDK12	0	MSKCC	GRCh37	17	37687366	37687366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	245	557	0	ENST00000447079.4:c.4270G>A	p.Glu1424Lys	p.E1424K	ENST00000447079	NM_015083.1	1424	Gag/Aag																																																																														
STAT5A	0	MSKCC	GRCh37	17	40441993	40441993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	98	815	0	ENST00000345506.4:c.238G>A	p.Gly80Arg	p.G80R	ENST00000345506	NM_003152.3	80	Ggg/Agg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41226507	41226507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	121	573	0	ENST00000357654.3:c.4516G>A	p.Asp1506Asn	p.D1506N	ENST00000357654	NM_007294.3	1506	Gat/Aat																																																																														
SPOP	0	MSKCC	GRCh37	17	47677814	47677814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	108	594	1	ENST00000347630.2:c.1051G>A	p.Glu351Lys	p.E351K	ENST00000347630	NM_001007230.1	351	Gag/Aag																																																																														
SPOP	0	MSKCC	GRCh37	17	47700168	47700168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	63	444	0	ENST00000347630.2:c.5C>T	p.Ser2Leu	p.S2L	ENST00000347630	NM_001007230.1	2	tCa/tTa																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740674	58740674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	124	623	0	ENST00000305921.3:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000305921	NM_003620.3	527	Gaa/Aaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581234	48581234	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	105	642	0	ENST00000342988.3:c.538C>T	p.Gln180Ter	p.Q180*	ENST00000342988	NM_005359.5	180	Caa/Taa																																																																														
TCF3	0	MSKCC	GRCh37	19	1625645	1625645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	132	870	0	ENST00000344749.5:c.429G>A	p.Met143Ile	p.M143I	ENST00000344749	NM_001136139.2	143	atG/atA																																																																														
DOT1L	0	MSKCC	GRCh37	19	2206785	2206785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	222	562	0	ENST00000398665.3:c.845G>A	p.Arg282Lys	p.R282K	ENST00000398665	NM_032482.2	282	aGa/aAa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2217909	2217909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	138	699	1	ENST00000398665.3:c.2683G>A	p.Glu895Lys	p.E895K	ENST00000398665	NM_032482.2	895	Gag/Aag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2223443	2223443	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	189	527	0	ENST00000398665.3:c.3554C>G	p.Ser1185Ter	p.S1185*	ENST00000398665	NM_032482.2	1185	tCa/tGa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5207935	5207935	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	242	613	0	ENST00000357368.4:c.5776G>A	p.Glu1926Lys	p.E1926K	ENST00000357368	NM_002850.3	1926	Gag/Aag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097233	11097233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	152	661	0	ENST00000344626.4:c.724C>T	p.Pro242Ser	p.P242S	ENST00000344626	NM_003072.3	242	Ccc/Tcc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272444	15272444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	401	986	0	ENST00000263388.2:c.5995G>A	p.Glu1999Lys	p.E1999K	ENST00000263388	NM_000435.2	1999	Gag/Aag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15278090	15278090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	267	777	0	ENST00000263388.2:c.5332G>A	p.Asp1778Asn	p.D1778N	ENST00000263388	NM_000435.2	1778	Gat/Aat																																																																														
JAK3	0	MSKCC	GRCh37	19	17943367	17943367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	292	694	1	ENST00000458235.1:c.2641G>A	p.Asp881Asn	p.D881N	ENST00000458235	NM_000215.3	881	Gat/Aat																																																																														
UPF1	0	MSKCC	GRCh37	19	18976499	18976499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	340	804	0	ENST00000262803.5:c.3149C>T	p.Ser1050Phe	p.S1050F	ENST00000262803	NM_002911.3	1050	tCt/tTt																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792825	33792825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	90	284	0	ENST00000498907.2:c.496G>A	p.Glu166Lys	p.E166K	ENST00000498907	NM_004364.3	166	Gag/Aag																																																																														
AXL	0	MSKCC	GRCh37	19	41765795	41765795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	96	418	0	ENST00000301178.4:c.2671G>A	p.Glu891Lys	p.E891K	ENST00000301178	NM_021913.4	891	Gag/Aag																																																																														
CIC	0	MSKCC	GRCh37	19	42793342	42793342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	218	650	1	ENST00000575354.2:c.1144G>A	p.Gly382Ser	p.G382S	ENST00000575354	NM_015125.3	382	Ggc/Agc																																																																														
CIC	0	MSKCC	GRCh37	19	42793358	42793358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	128	635	0	ENST00000575354.2:c.1160C>T	p.Ser387Phe	p.S387F	ENST00000575354	NM_015125.3	387	tCt/tTt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25459852	25459852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	107	739	1	ENST00000264709.3:c.2431G>A	p.Asp811Asn	p.D811N	ENST00000264709	NM_175629.2	811	Gat/Aat																																																																														
ALK	0	MSKCC	GRCh37	2	29416698	29416698	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56181542		P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	112	458	1	ENST00000389048.3:c.4255G>A	p.Glu1419Lys	p.E1419K	ENST00000389048	NM_004304.4	1419	Gag/Aag																																																																														
SOS1	0	MSKCC	GRCh37	2	39237792	39237792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	76	536	0	ENST00000402219.2:c.2443G>A	p.Glu815Lys	p.E815K	ENST00000402219	NM_005633.3	815	Gaa/Aaa																																																																														
EPCAM	0	MSKCC	GRCh37	2	47600981	47600981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	112	698	0	ENST00000263735.4:c.219G>A	p.Met73Ile	p.M73I	ENST00000263735	NM_002354.2	73	atG/atA																																																																														
MSH6	0	MSKCC	GRCh37	2	48010526	48010526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	99	384	0	ENST00000234420.5:c.154G>A	p.Glu52Lys	p.E52K	ENST00000234420	NM_000179.2	52	Gag/Aag																																																																														
MSH6	0	MSKCC	GRCh37	2	48025904	48025904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	122	512	0	ENST00000234420.5:c.782C>T	p.Ser261Phe	p.S261F	ENST00000234420	NM_000179.2	261	tCt/tTt																																																																														
XPO1	0	MSKCC	GRCh37	2	61725918	61725918	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	169	458	1	ENST00000401558.2:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000401558	NM_003400.3	217	Caa/Taa																																																																														
TMEM127	0	MSKCC	GRCh37	2	96919703	96919703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	107	565	0	ENST00000258439.3:c.560C>T	p.Ser187Leu	p.S187L	ENST00000258439	NM_001193304.2	187	tCa/tTa																																																																														
PMS1	0	MSKCC	GRCh37	2	190732616	190732616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	161	623	0	ENST00000441310.2:c.2434C>A	p.Arg812Ser	p.R812S	ENST00000441310	NM_000534.4	812	Cgt/Agt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198270054	198270054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	122	453	0	ENST00000335508.6:c.1382C>T	p.Ser461Phe	p.S461F	ENST00000335508	NM_012433.2	461	tCt/tTt																																																																														
CASP8	0	MSKCC	GRCh37	2	202136300	202136300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	53	649	0	ENST00000358485.4:c.544C>T	p.Leu182Phe	p.L182F	ENST00000358485	NM_001080125.1	182	Ctt/Ttt																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024227751		P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	95	504	0	ENST00000305123.5:c.109G>A	p.Glu37Lys	p.E37K	ENST00000305123	NM_005544.2	37	Gag/Aag																																																																														
PAK7	0	MSKCC	GRCh37	20	9538320	9538320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	186	575	0	ENST00000353224.5:c.1678C>T	p.His560Tyr	p.H560Y	ENST00000353224	NM_177990.2	560	Cat/Tat																																																																														
TOP1	0	MSKCC	GRCh37	20	39750694	39750694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	131	309	0	ENST00000361337.2:c.2094G>C	p.Leu698Phe	p.L698F	ENST00000361337	NM_003286.2	698	ttG/ttC																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264878	46264878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	95	464	0	ENST00000371998.3:c.1748C>T	p.Ser583Leu	p.S583L	ENST00000371998		583	tCa/tTa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46265037	46265037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	117	469	0	ENST00000371998.3:c.1907C>T	p.Ser636Phe	p.S636F	ENST00000371998		636	tCc/tTc																																																																														
AURKA	0	MSKCC	GRCh37	20	54958078	54958078	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	124	297	0	ENST00000312783.6:c.529C>T	p.Gln177Ter	p.Q177*	ENST00000312783	NM_198436.1	177	Cag/Tag																																																																														
ERG	0	MSKCC	GRCh37	21	39762954	39762954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	203	499	0	ENST00000288319.7:c.882G>C	p.Gln294His	p.Q294H	ENST00000288319	NM_182918.3	294	caG/caC																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42870089	42870089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	159	696	2	ENST00000398585.3:c.83C>T	p.Ser28Leu	p.S28L	ENST00000398585	NM_001135099.1	28	tCa/tTa																																																																														
MAPK1	0	MSKCC	GRCh37	22	22221645	22221645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	105	358	0	ENST00000215832.6:c.86C>T	p.Ser29Leu	p.S29L	ENST00000215832	NM_002745.4	29	tCg/tTg																																																																														
EP300	0	MSKCC	GRCh37	22	41573903	41573903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	106	717	1	ENST00000263253.7:c.6188C>T	p.Ser2063Phe	p.S2063F	ENST00000263253	NM_001429.3	2063	tCt/tTt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41279543	41279543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	117	496	1	ENST00000349496.5:c.2113G>A	p.Glu705Lys	p.E705K	ENST00000349496	NM_001904.3	705	Gaa/Aaa																																																																														
SETD2	0	MSKCC	GRCh37	3	47164553	47164553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	67	295	0	ENST00000409792.3:c.1573G>A	p.Glu525Lys	p.E525K	ENST00000409792	NM_014159.6	525	Gaa/Aaa																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73047278	73047278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	178	522	0	ENST00000356692.5:c.85C>T	p.Leu29Phe	p.L29F	ENST00000356692		29	Ctt/Ttt																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138474668	138474668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	100	566	0	ENST00000289153.2:c.325C>T	p.Leu109Phe	p.L109F	ENST00000289153	NM_006219.2	109	Ctc/Ttc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178938922	178938922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	74	436	0	ENST00000263967.3:c.2164G>A	p.Glu722Lys	p.E722K	ENST00000263967	NM_006218.2	722	Gag/Aag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	75	628	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	161	443	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP63	0	MSKCC	GRCh37	3	189608654	189608654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	176	539	0	ENST00000264731.3:c.1729G>A	p.Glu577Lys	p.E577K	ENST00000264731	NM_003722.4	577	Gag/Aag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1978221	1978221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	302	726	1	ENST00000382891.5:c.3641C>T	p.Ser1214Leu	p.S1214L	ENST00000382891	NM_133335.3	1214	tCa/tTa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55136887	55136887	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	192	557	0	ENST00000257290.5:c.1209G>C	p.Lys403Asn	p.K403N	ENST00000257290	NM_006206.4	403	aaG/aaC																																																																														
TET2	0	MSKCC	GRCh37	4	106196697	106196697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	102	545	0	ENST00000380013.4:c.5030C>T	p.Thr1677Ile	p.T1677I	ENST00000380013	NM_001127208.2	1677	aCa/aTa																																																																														
TET2	0	MSKCC	GRCh37	4	106197635	106197635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	75	355	0	ENST00000380013.4:c.5968G>A	p.Ala1990Thr	p.A1990T	ENST00000380013	NM_001127208.2	1990	Gcc/Acc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332589	153332589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	83	360	1	ENST00000281708.4:c.367G>A	p.Asp123Asn	p.D123N	ENST00000281708	NM_033632.3	123	Gac/Aac																																																																														
FAT1	0	MSKCC	GRCh37	4	187517867	187517867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	52	500	1	ENST00000441802.2:c.12827C>T	p.Ser4276Phe	p.S4276F	ENST00000441802	NM_005245.3	4276	tCt/tTt																																																																														
RICTOR	0	MSKCC	GRCh37	5	38945147	38945147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	43	367	0	ENST00000357387.3:c.4657G>A	p.Asp1553Asn	p.D1553N	ENST00000357387	NM_152756.3	1553	Gat/Aat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	39074433	39074433	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	228	557	1	ENST00000357387.3:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000357387	NM_152756.3	16	cGa/cAa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178058	56178058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	139	310	0	ENST00000399503.3:c.3031C>T	p.Pro1011Ser	p.P1011S	ENST00000399503	NM_005921.1	1011	Ccc/Tcc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178544	56178544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	74	306	0	ENST00000399503.3:c.3517C>T	p.His1173Tyr	p.H1173Y	ENST00000399503	NM_005921.1	1173	Cat/Tat																																																																														
NSD1	0	MSKCC	GRCh37	5	176696790	176696790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	65	355	0	ENST00000439151.2:c.5491G>A	p.Asp1831Asn	p.D1831N	ENST00000439151	NM_022455.4	1831	Gat/Aat																																																																														
FLT4	0	MSKCC	GRCh37	5	180048007	180048007	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	247	657	0	ENST00000261937.6:c.2168G>A	p.Gly723Glu	p.G723E	ENST00000261937	NM_182925.4	723	gGa/gAa																																																																														
IRF4	0	MSKCC	GRCh37	6	393279	393279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	262	728	0	ENST00000380956.4:c.127G>C	p.Glu43Gln	p.E43Q	ENST00000380956	NM_001195286.1	43	Gag/Cag																																																																														
MDC1	0	MSKCC	GRCh37	6	30671596	30671597	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	207	586	1	ENST00000376406.3:c.5363_5364delinsAT	p.Ile1788Asn	p.I1788N	ENST00000376406	NM_014641.2	1788	aTC/aAT																																																																														
MDC1	0	MSKCC	GRCh37	6	30681006	30681006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	220	541	0	ENST00000376406.3:c.713G>C	p.Arg238Thr	p.R238T	ENST00000376406	NM_014641.2	238	aGa/aCa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	115	484	0	ENST00000375023.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000375023	NM_004557.3	1836	Gag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32164807	32164807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	102	642	0	ENST00000375023.3:c.5095G>A	p.Glu1699Lys	p.E1699K	ENST00000375023	NM_004557.3	1699	Gag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170046	32170046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	138	829	0	ENST00000375023.3:c.3562G>A	p.Asp1188Asn	p.D1188N	ENST00000375023	NM_004557.3	1188	Gat/Aat																																																																														
TAP1	0	MSKCC	GRCh37	6	32821535	32821535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	116	690	3	ENST00000354258.4:c.59C>T	p.Pro20Leu	p.P20L	ENST00000354258	NM_000593.5	20	cCg/cTg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93974394	93974394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	137	541	0	ENST00000369303.4:c.1660C>T	p.Pro554Ser	p.P554S	ENST00000369303	NM_004440.3	554	Cct/Tct																																																																														
PRDM1	0	MSKCC	GRCh37	6	106555335	106555335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	182	491	0	ENST00000369096.4:c.2452G>C	p.Glu818Gln	p.E818Q	ENST00000369096	NM_001198.3	818	Gaa/Caa																																																																														
ROS1	0	MSKCC	GRCh37	6	117681103	117681103	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	197	628	2	ENST00000368508.3:c.3517C>T	p.Gln1173Ter	p.Q1173*	ENST00000368508	NM_002944.2	1173	Caa/Taa																																																																														
ETV1	0	MSKCC	GRCh37	7	14027714	14027714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	169	404	0	ENST00000405192.2:c.130G>A	p.Glu44Lys	p.E44K	ENST00000405192	NM_001163147.1	44	Gaa/Aaa																																																																														
EGFR	0	MSKCC	GRCh37	7	55259560	55259560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	121	601	0	ENST00000275493.2:c.2618G>A	p.Gly873Glu	p.G873E	ENST00000275493	NM_005228.3	873	gGa/gAa																																																																														
MET	0	MSKCC	GRCh37	7	116339829	116339829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	68	508	0	ENST00000397752.3:c.691G>A	p.Asp231Asn	p.D231N	ENST00000397752	NM_000245.2	231	Gac/Aac																																																																														
SMO	0	MSKCC	GRCh37	7	128852161	128852161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	171	831	0	ENST00000249373.3:c.2233C>T	p.Gln745Ter	p.Q745*	ENST00000249373	NM_005631.4	745	Cag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151851156	151851156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	81	429	0	ENST00000262189.6:c.12215C>T	p.Pro4072Leu	p.P4072L	ENST00000262189	NM_170606.2	4072	cCa/cTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151949138	151949138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	48	462	0	ENST00000262189.6:c.1507G>A	p.Glu503Lys	p.E503K	ENST00000262189	NM_170606.2	503	Gaa/Aaa																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540306	23540306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	112	537	1	ENST00000380871.4:c.97G>A	p.Asp33Asn	p.D33N	ENST00000380871	NM_006167.3	33	Gac/Aac																																																																														
DUSP4	0	MSKCC	GRCh37	8	29195831	29195831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	321	763	0	ENST00000240100.2:c.767G>A	p.Ser256Asn	p.S256N	ENST00000240100	NM_001394.6	256	aGc/aAc																																																																														
DUSP4	0	MSKCC	GRCh37	8	29207402	29207402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	259	490	0	ENST00000240100.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000240100	NM_001394.6	132	Cgc/Tgc																																																																														
PREX2	0	MSKCC	GRCh37	8	69005901	69005901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	102	634	0	ENST00000288368.4:c.2312C>T	p.Ser771Phe	p.S771F	ENST00000288368	NM_024870.2	771	tCt/tTt																																																																														
CD274	0	MSKCC	GRCh37	9	5463077	5463077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	140	342	0	ENST00000381577.3:c.638G>T	p.Arg213Ile	p.R213I	ENST00000381577	NM_014143.3	213	aGa/aTa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465582	8465582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	128	609	0	ENST00000356435.5:c.3598C>T	p.Pro1200Ser	p.P1200S	ENST00000356435		1200	Ccc/Tcc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98221935	98221935	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201118857		P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	108	613	2	ENST00000331920.6:c.2834G>A	p.Arg945Gln	p.R945Q	ENST00000331920	NM_000264.3	945	cGa/cAa																																																																														
ABL1	0	MSKCC	GRCh37	9	133753861	133753861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	135	648	0	ENST00000318560.5:c.1330G>A	p.Asp444Asn	p.D444N	ENST00000318560	NM_005157.4	444	Gac/Aac																																																																														
TSC1	0	MSKCC	GRCh37	9	135772916	135772916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	154	600	0	ENST00000298552.3:c.2707G>A	p.Asp903Asn	p.D903N	ENST00000298552	NM_001162426.1	903	Gat/Aat																																																																														
TSC1	0	MSKCC	GRCh37	9	135782153	135782153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	109	610	0	ENST00000298552.3:c.1403C>T	p.Ser468Phe	p.S468F	ENST00000298552	NM_001162426.1	468	tCt/tTt																																																																														
TSC1	0	MSKCC	GRCh37	9	135796796	135796796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	134	409	0	ENST00000298552.3:c.691C>T	p.Pro231Ser	p.P231S	ENST00000298552	NM_001162426.1	231	Ccg/Tcg																																																																														
TSC1	0	MSKCC	GRCh37	9	135801054	135801054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	202	608	1	ENST00000298552.3:c.283C>T	p.His95Tyr	p.H95Y	ENST00000298552	NM_001162426.1	95	Cat/Tat																																																																														
RXRA	0	MSKCC	GRCh37	9	137300932	137300932	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	155	747	0	ENST00000481739.1:c.577C>T	p.Gln193Ter	p.Q193*	ENST00000481739	NM_002957.4	193	Cag/Tag																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15840862	15840862	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	166	432	0	ENST00000307771.7:c.946G>C	p.Glu316Gln	p.E316Q	ENST00000307771	NM_005089.3	316	Gaa/Caa																																																																														
BCOR	0	MSKCC	GRCh37	X	39932926	39932926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	74	524	0	ENST00000378444.4:c.1673C>T	p.Ser558Leu	p.S558L	ENST00000378444	NM_001123385.1	558	tCa/tTa																																																																														
RBM10	0	MSKCC	GRCh37	X	47028824	47028824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	107	816	0	ENST00000329236.7:c.128C>T	p.Ser43Leu	p.S43L	ENST00000329236	NM_001204466.1	43	tCa/tTa																																																																														
ARAF	0	MSKCC	GRCh37	X	47430373	47430373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	115	734	0	ENST00000377045.4:c.1648C>T	p.Leu550Phe	p.L550F	ENST00000377045	NM_001654.4	550	Ctc/Ttc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53227021	53227021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	65	636	0	ENST00000375401.3:c.2554G>A	p.Glu852Lys	p.E852K	ENST00000375401	NM_004187.3	852	Gag/Aag																																																																														
ATRX	0	MSKCC	GRCh37	X	76854916	76854916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	70	723	0	ENST00000373344.5:c.5920G>A	p.Gly1974Arg	p.G1974R	ENST00000373344	NM_000489.3	1974	Gga/Aga																																																																														
ATRX	0	MSKCC	GRCh37	X	76939520	76939520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	71	553	1	ENST00000373344.5:c.1228G>A	p.Glu410Lys	p.E410K	ENST00000373344	NM_000489.3	410	Gaa/Aaa																																																																														
ATRX	0	MSKCC	GRCh37	X	76939532	76939532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	122	552	0	ENST00000373344.5:c.1216C>T	p.His406Tyr	p.H406Y	ENST00000373344	NM_000489.3	406	Cat/Tat																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	98	480	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	69	574	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RHOA	0	MSKCC	GRCh37	3	49405953	49405953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	66	305	0	ENST00000418115.1:c.185G>A	p.Gly62Glu	p.G62E	ENST00000418115	NM_001664.2	62	gGg/gAg																																																																														
IL7R	0	MSKCC	GRCh37	5	35876422	35876422	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	54	636	0	ENST00000303115.3:c.1214T>A	p.Leu405Gln	p.L405Q	ENST00000303115	NM_002185.3	405	cTg/cAg																																																																														
MPL	0	MSKCC	GRCh37	1	43812538	43812538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	205	613	0	ENST00000372470.3:c.1241C>T	p.Ser414Leu	p.S414L	ENST00000372470	NM_005373.2	414	tCg/tTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	213	686	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
TBX3	0	MSKCC	GRCh37	12	115111972	115111972	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	165	706	0	ENST00000257566.3:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000257566	NM_016569.3	590	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	136	430	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																																																														
RET	0	MSKCC	GRCh37	10	43620429	43620429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	148	516	0	ENST00000355710.3:c.3038G>C	p.Arg1013Thr	p.R1013T	ENST00000355710	NM_020975.4	1013	aGa/aCa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523318	176523318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	193	637	1	ENST00000292408.4:c.1975G>A	p.Glu659Lys	p.E659K	ENST00000292408	NM_213647.1	659	Gag/Aag																																																																														
CDC73	0	MSKCC	GRCh37	1	193091415	193091415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	156	458	0	ENST00000367435.3:c.85G>A	p.Glu29Lys	p.E29K	ENST00000367435	NM_024529.4	29	Gag/Aag																																																																														
JUN	0	MSKCC	GRCh37	1	59248409	59248409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	112	401	1	ENST00000371222.2:c.334G>A	p.Glu112Lys	p.E112K	ENST00000371222	NM_002228.3	112	Gag/Aag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8524966	8524966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	123	406	0	ENST00000356435.5:c.638C>T	p.Ala213Val	p.A213V	ENST00000356435		213	gCg/gTg																																																																														
ESR1	0	MSKCC	GRCh37	6	152265533	152265533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	177	460	0	ENST00000206249.3:c.986C>T	p.Ser329Phe	p.S329F	ENST00000206249	NM_000125.3	329	tCc/tTc																																																																														
CDK8	0	MSKCC	GRCh37	13	26828845	26828845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	146	467	0	ENST00000381527.3:c.67G>A	p.Glu23Lys	p.E23K	ENST00000381527	NM_001260.1	23	Gag/Aag																																																																														
DIS3	0	MSKCC	GRCh37	13	73335903	73335903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	126	465	0	ENST00000377767.4:c.2392G>A	p.Asp798Asn	p.D798N	ENST00000377767	NM_014953.3	798	Gac/Aac																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482835	67482835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	111	576	0	ENST00000327367.4:c.1239G>C	p.Gln413His	p.Q413H	ENST00000327367	NM_005902.3	413	caG/caC																																																																														
PALB2	0	MSKCC	GRCh37	16	23641274	23641274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	168	612	0	ENST00000261584.4:c.2201C>T	p.Thr734Ile	p.T734I	ENST00000261584	NM_024675.3	734	aCt/aTt																																																																														
CDH1	0	MSKCC	GRCh37	16	68772202	68772203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	142	579	0	ENST00000261769.5:c.52dup	p.Ser18PhefsTer16	p.S18Ffs*16	ENST00000261769	NM_004360.3	17	-/T																																																																														
NF1	0	MSKCC	GRCh37	17	29663415	29663415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	188	510	0	ENST00000358273.4:c.6071G>A	p.Gly2024Glu	p.G2024E	ENST00000358273	NM_001042492.2	2024	gGa/gAa																																																																														
JAK3	0	MSKCC	GRCh37	19	17937667	17937667	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	143	577	1	ENST00000458235.1:c.3260C>A	p.Ser1087Ter	p.S1087*	ENST00000458235	NM_000215.3	1087	tCa/tAa																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138413689	138413689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	190	481	0	ENST00000289153.2:c.1831G>T	p.Asp611Tyr	p.D611Y	ENST00000289153	NM_006219.2	611	Gat/Tat																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178948096	178948096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	112	280	0	ENST00000263967.3:c.2868G>C	p.Leu956Phe	p.L956F	ENST00000263967	NM_006218.2	956	ttG/ttC																																																																														
FAT1	0	MSKCC	GRCh37	4	187510060	187510060	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	160	453	0	ENST00000441802.2:c.13453A>C	p.Asn4485His	p.N4485H	ENST00000441802	NM_005245.3	4485	Aac/Cac																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879019	151879019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	178	509	0	ENST00000262189.6:c.5926G>T	p.Asp1976Tyr	p.D1976Y	ENST00000262189	NM_170606.2	1976	Gat/Tat																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23539034	23539034	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	131	479	0	ENST00000380871.4:c.405G>C	p.Gln135His	p.Q135H	ENST00000380871	NM_006167.3	135	caG/caC																																																																														
NBN	0	MSKCC	GRCh37	8	90965642	90965642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	116	338	0	ENST00000265433.3:c.1675G>C	p.Glu559Gln	p.E559Q	ENST00000265433	NM_002485.4	559	Gaa/Caa																																																																														
RAD21	0	MSKCC	GRCh37	8	117869542	117869542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	90	438	0	ENST00000297338.2:c.652G>A	p.Asp218Asn	p.D218N	ENST00000297338	NM_006265.2	218	Gat/Aat																																																																														
JAK2	0	MSKCC	GRCh37	9	5077542	5077542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	110	405	0	ENST00000381652.3:c.1954G>C	p.Glu652Gln	p.E652Q	ENST00000381652	NM_004972.3	652	Gaa/Caa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226184	53226184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	40	636	0	ENST00000375401.3:c.2665G>A	p.Glu889Lys	p.E889K	ENST00000375401	NM_004187.3	889	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	34	283	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	158	583	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59761459	59761460	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	82	505	0	ENST00000259008.2:c.2947dup	p.Ile983AsnfsTer19	p.I983Nfs*19	ENST00000259008	NM_032043.2	983	att/aAtt																																																																														
SOX9	0	MSKCC	GRCh37	17	70120373	70120374	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	139	1005	0	ENST00000245479.2:c.1376_1377dupGC	p.Thr460AlafsTer11	p.T460Afs*11	ENST00000245479	NM_000346.3	459	ggc/gGCgc																																																																														
APC	0	MSKCC	GRCh37	5	112175074	112175074	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	42	243	0	ENST00000257430.4:c.3784del	p.Tyr1262IlefsTer3	p.Y1262Ifs*3	ENST00000257430	NM_000038.5	1261	acT/ac																																																																														
ATM	0	MSKCC	GRCh37	11	108121508	108121508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	127	535	0	ENST00000278616.4:c.1316T>C	p.Leu439Pro	p.L439P	ENST00000278616	NM_000051.3	439	cTa/cCa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730778	40730778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	98	571	0	ENST00000373198.4:c.3757G>A	p.Ala1253Thr	p.A1253T	ENST00000373198	NM_133170.3	1253	Gca/Aca																																																																														
IRF4	0	MSKCC	GRCh37	6	393198	393198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	100	493	1	ENST00000380956.4:c.46G>A	p.Ala16Thr	p.A16T	ENST00000380956	NM_001195286.1	16	Gcg/Acg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3820624	3820624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	85	777	1	ENST00000262367.5:c.2827C>T	p.Gln943Ter	p.Q943*	ENST00000262367	NM_004380.2	943	Cag/Tag																																																																														
RET	0	MSKCC	GRCh37	10	43597862	43597862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	125	758	4	ENST00000355710.3:c.410G>A	p.Cys137Tyr	p.C137Y	ENST00000355710	NM_020975.4	137	tGc/tAc																																																																														
RAD51B	0	MSKCC	GRCh37	14	68352618	68352618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	37	362	0	ENST00000487270.1:c.485G>A	p.Arg162Lys	p.R162K	ENST00000487270	NM_133509.3	162	aGa/aAa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15973652	15973652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	32	373	0	ENST00000268712.3:c.4340G>A	p.Arg1447Gln	p.R1447Q	ENST00000268712	NM_006311.3	1447	cGg/cAg																																																																														
TERT	0	MSKCC	GRCh37	5	1282709	1282709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	36	579	0	ENST00000310581.5:c.1604G>A	p.Arg535His	p.R535H	ENST00000310581	NM_198253.2	535	cGt/cAt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520504	176520504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	45	626	1	ENST00000292408.4:c.1349T>C	p.Val450Ala	p.V450A	ENST00000292408	NM_213647.1	450	gTg/gCg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151853118	151853118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	98	437	0	ENST00000262189.6:c.11837C>T	p.Pro3946Leu	p.P3946L	ENST00000262189	NM_170606.2	3946	cCa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010207-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	365	583	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0010207-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	77	362	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149495336	149495336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010207-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			738	126	467	0	ENST00000261799.4:c.3311G>A	p.Ser1104Asn	p.S1104N	ENST00000261799	NM_002609.3	1104	aGc/aAc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412164	63412164	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010207-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	328	367	0	ENST00000330258.3:c.1003C>T	p.Gln335Ter	p.Q335*	ENST00000330258	NM_152424.3	335	Cag/Tag																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	342	505	2	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	205	295	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916648	178916648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	304	409	0	ENST00000263967.3:c.35G>A	p.Gly12Asp	p.G12D	ENST00000263967	NM_006218.2	12	gGc/gAc																																																																														
TRAF2	0	MSKCC	GRCh37	9	139793211	139793212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	374	588	0	ENST00000247668.2:c.26dup	p.Gly10TrpfsTer70	p.G10Wfs*70	ENST00000247668	NM_021138.3	7	acc/aCcc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	219	469	2	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	243	509	4	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																																																														
JAK3	0	MSKCC	GRCh37	19	17955043	17955043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs199602590		P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	449	696	1	ENST00000458235.1:c.184G>A	p.Gly62Ser	p.G62S	ENST00000458235	NM_000215.3	62	Ggc/Agc																																																																														
RARA	0	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	135	560	0	ENST00000254066.5:c.1319delC	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711879	89711880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	358	429	0	ENST00000371953.3:c.499dup	p.Thr167AsnfsTer13	p.T167Nfs*13	ENST00000371953	NM_000314.4	166	gta/gtAa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	471	638	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	301	577	6	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	294	675	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346437	89346437	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	376	630	4	ENST00000301030.4:c.6513del	p.Val2173SerfsTer2	p.V2173Sfs*2	ENST00000301030	NM_001256183.1	2171	ccC/cc																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439784	51439784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	252	370	0	ENST00000262662.1:c.349C>T	p.Arg117Trp	p.R117W	ENST00000262662		117	Cgg/Tgg																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073457	8073457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	276	506	0	ENST00000377482.5:c.1202C>A	p.Pro401Gln	p.P401Q	ENST00000377482	NM_018948.3	401	cCa/cAa																																																																														
BCL10	0	MSKCC	GRCh37	1	85736510	85736510	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	34	382	0	ENST00000370580.1:c.137T>A	p.Ile46Lys	p.I46K	ENST00000370580	NM_003921.4	46	aTa/aAa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71945433	71945433	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	367	635	0	ENST00000298229.2:c.2321T>C	p.Leu774Pro	p.L774P	ENST00000298229	NM_001567.3	774	cTg/cCg																																																																														
PGR	0	MSKCC	GRCh37	11	100998612	100998622	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCCTCCGC	GAGGCCTCCGC	-			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	378	564	0	ENST00000325455.5:c.1180_1190del	p.Ala394ArgfsTer176	p.A394Rfs*176	ENST00000325455	NM_001202474.3	394	GCGGAGGCCTCc/c																																																																														
B2M	0	MSKCC	GRCh37	15	45007741	45007744	+	frameshift_variant	Frame_Shift_Del	DEL	GAGA	GAGA	-			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	93	490	0	ENST00000558401.1:c.192_195del	p.Arg65LeufsTer37	p.R65Lfs*37	ENST00000558401	NM_004048.2	63	gGAGAg/gg																																																																														
MAPK3	0	MSKCC	GRCh37	16	30134425	30134425	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	406	669	0	ENST00000263025.4:c.106T>G	p.Phe36Val	p.F36V	ENST00000263025	NM_002746.2	36	Ttc/Gtc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830482	72830482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	54	594	0	ENST00000268489.5:c.6099G>T	p.Arg2033Ser	p.R2033S	ENST00000268489	NM_006885.3	2033	agG/agT																																																																														
FANCA	0	MSKCC	GRCh37	16	89836581	89836581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145552439		P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	382	648	3	ENST00000389301.3:c.2309G>A	p.Arg770His	p.R770H	ENST00000389301	NM_000135.2	770	cGt/cAt																																																																														
EPAS1	0	MSKCC	GRCh37	2	46574101	46574101	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	402	734	0	ENST00000263734.3:c.116A>C	p.His39Pro	p.H39P	ENST00000263734	NM_001430.4	39	cAt/cCt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927987	178927987	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	125	319	0	ENST00000263967.3:c.1265T>G	p.Leu422Trp	p.L422W	ENST00000263967	NM_006218.2	422	tTg/tGg																																																																														
TAP1	0	MSKCC	GRCh37	6	32821583	32821583	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	213	717	0	ENST00000354258.4:c.11T>C	p.Leu4Pro	p.L4P	ENST00000354258	NM_000593.5	4	cTt/cCt																																																																														
CARD11	0	MSKCC	GRCh37	7	2984060	2984060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	336	506	0	ENST00000396946.4:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000396946	NM_032415.4	157	cGg/cAg																																																																														
BCOR	0	MSKCC	GRCh37	X	39922283	39922283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	37	421	0	ENST00000378444.4:c.3889T>C	p.Ser1297Pro	p.S1297P	ENST00000378444	NM_001123385.1	1297	Tca/Cca																																																																														
MED12	0	MSKCC	GRCh37	X	70353032	70353032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	351	634	1	ENST00000374080.3:c.4587G>A	p.Met1529Ile	p.M1529I	ENST00000374080		1529	atG/atA																																																																														
MED12	0	MSKCC	GRCh37	X	70357694	70357694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	123	769	0	ENST00000374080.3:c.5945C>A	p.Pro1982His	p.P1982H	ENST00000374080		1982	cCt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	146	509	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	209	403	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	326	676	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	27	526	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	333	752	0	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30135409	30135409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	96	424	0	ENST00000331968.5:c.409G>A	p.Ala137Thr	p.A137T	ENST00000331968	NM_002742.2	137	Gcc/Acc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057702	27057702	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	220	806	0	ENST00000324856.7:c.1410T>G	p.Tyr470Ter	p.Y470*	ENST00000324856	NM_006015.4	470	taT/taG																																																																														
IGF2	0	MSKCC	GRCh37	11	2154290	2154290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	187	876	0	ENST00000434045.2:c.638C>T	p.Pro213Leu	p.P213L	ENST00000434045	NM_001127598.1	213	cCc/cTc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741897	17741897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	21	121	0	ENST00000250003.3:c.568G>A	p.Gly190Ser	p.G190S	ENST00000250003	NM_002478.4	190	Ggc/Agc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741924	17741924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	98	235	0	ENST00000250003.3:c.595G>A	p.Ala199Thr	p.A199T	ENST00000250003	NM_002478.4	199	Gcg/Acg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446455	49446455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	224	461	1	ENST00000301067.7:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000301067	NM_003482.3	384	Gag/Aag																																																																														
AXIN2	0	MSKCC	GRCh37	17	63545728	63545731	+	protein_altering_variant	In_Frame_Ins	INS	TAGC	TAGC	CTATGTG			P-0026721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	338	636	0	ENST00000307078.5:c.863_866delinsCACATAG	p.Gly288_Tyr289delinsAlaHisSer	p.G288_Y289delinsAHS	ENST00000307078	NM_004655.3	288	gGCTAt/gCACATAGt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0026857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	158	631	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	111	351	0	ENST00000349496.5:c.109T>G	p.Ser37Ala	p.S37A	ENST00000349496	NM_001904.3	37	Tct/Gct																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	613	484	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	266	396	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
SOX9	0	MSKCC	GRCh37	17	70120041	70120042	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	63	76	0	ENST00000245479.2:c.1044dup	p.Pro349AlafsTer229	p.P349Afs*229	ENST00000245479	NM_000346.3	348	cag/caGg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061211	38061240	+	inframe_deletion	In_Frame_Del	DEL	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	-			P-0026861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	244	516	0	ENST00000250448.2:c.749_778del	p.Ser250_Tyr259del	p.S250_Y259del	ENST00000250448	NM_004496.3	250	tCCGGCAACATGTTCGAGAACGGCTGCTACTtg/ttg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914670	32914670	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	69	585	1	ENST00000380152.3:c.6178A>G	p.Thr2060Ala	p.T2060A	ENST00000380152		2060	Aca/Gca																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589560	67589583	+	inframe_deletion	In_Frame_Del	DEL	TATTGAAGCTGTAGGGAAAAAATT	TATTGAAGCTGTAGGGAAAAAATT	-			P-0026861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	87	345	0	ENST00000274335.5:c.1323_1346del	p.Asn441_Leu449delinsLys	p.N441_L449delinsK	ENST00000274335		441	aaTATTGAAGCTGTAGGGAAAAAATTa/aaa																																																																														
APC	0	MSKCC	GRCh37	5	112175883	112175884	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	171	321	0	ENST00000257430.4:c.4593dup	p.Asp1532Ter	p.D1532*	ENST00000257430	NM_000038.5	1531	aat/aaTt																																																																														
RAD21	0	MSKCC	GRCh37	8	117866612	117866614	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0026861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	300	591	0	ENST00000297338.2:c.1031_1033del	p.Tyr344del	p.Y344del	ENST00000297338	NM_006265.2	344	tATTca/tca																																																																														
MDM2	0	MSKCC	GRCh37	12	69222564	69222564	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3039	212	435	0	ENST00000462284.1:c.537T>A	p.Asp179Glu	p.D179E	ENST00000462284	NM_002392.5	179	gaT/gaA																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	112	469	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
ARID2	0	MSKCC	GRCh37	12	46240637	46240637	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0026864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	48	247	0	ENST00000334344.6:c.1499-2A>C		p.X500_splice	ENST00000334344	NM_152641.2	500																																																																															
ARID2	0	MSKCC	GRCh37	12	46245755	46245755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	54	406	0	ENST00000334344.6:c.3851del	p.Lys1284ArgfsTer11	p.K1284Rfs*11	ENST00000334344	NM_152641.2	1283	acA/ac																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061634	38061634	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	26	288	0	ENST00000250448.2:c.355C>T	p.Gln119Ter	p.Q119*	ENST00000250448	NM_004496.3	119	Cag/Tag																																																																														
NUP93	0	MSKCC	GRCh37	16	56862939	56862939	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	54	344	0	ENST00000308159.5:c.845A>C	p.Gln282Pro	p.Q282P	ENST00000308159	NM_014669.4	282	cAg/cCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577519	7577527	+	inframe_deletion	In_Frame_Del	DEL	GATGGTGAG	GATGGTGAG	-			P-0026548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			754	185	627	0	ENST00000269305.4:c.754_762del	p.Leu252_Ile254del	p.L252_I254del	ENST00000269305	NM_001126112.2	252	CTCACCATC/-																																																																														
SUFU	0	MSKCC	GRCh37	10	104389902	104389902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			686	78	479	0	ENST00000369902.3:c.1445C>T	p.Pro482Leu	p.P482L	ENST00000369902	NM_016169.3	482	cCg/cTg																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88683191	88683191	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			189	44	177	0	ENST00000372037.3:c.1401C>G	p.Tyr467Ter	p.Y467*	ENST00000372037	NM_004329.2	467	taC/taG																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0026548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			683	158	590	0	ENST00000407977.2:c.348_349dup	p.Arg117ProfsTer42	p.R117Pfs*42	ENST00000407977		117	cgc/cCCgc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2191010	2191010	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0026548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	103	355	0	ENST00000398665.3:c.265-1G>A		p.X89_splice	ENST00000398665	NM_032482.2	89																																																																															
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026557-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			117	140	602	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026557-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	254	482	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0026557-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			242	73	477	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
IL10	0	MSKCC	GRCh37	1	206943197	206943197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026557-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	51	430	0	ENST00000423557.1:c.421C>A	p.Gln141Lys	p.Q141K	ENST00000423557	NM_000572.2	141	Cag/Aag																																																																														
GLI1	0	MSKCC	GRCh37	12	57858983	57858983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	48	742	1	ENST00000228682.2:c.479C>T	p.Ala160Val	p.A160V	ENST00000228682	NM_005269.2	160	gCc/gTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877847	151877868	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAGTTACTCCTGAAGTTGGC	ATCAGTTACTCCTGAAGTTGGC	-			P-0026866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	45	396	0	ENST00000262189.6:c.7077_7098del	p.Pro2360HisfsTer5	p.P2360Hfs*5	ENST00000262189	NM_170606.2	2359	gtGCCAACTTCAGGAGTAACTGAT/gt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	200	409	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0026867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	404	664	1	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	113	352	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
IRF4	0	MSKCC	GRCh37	6	397187	397187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	145	385	1	ENST00000380956.4:c.572C>T	p.Pro191Leu	p.P191L	ENST00000380956	NM_001195286.1	191	cCg/cTg																																																																														
PMS1	0	MSKCC	GRCh37	2	190718801	190718802	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0026867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	63	256	0	ENST00000441310.2:c.961_962del	p.Asn321Ter	p.N321*	ENST00000441310	NM_000534.4	320	cAA/c																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	185	507	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	637	810	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																														
RB1	0	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	208	612	0	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga																																																																														
NF2	0	MSKCC	GRCh37	22	30032794	30032794	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	115	517	0	ENST00000338641.4:c.169C>T	p.Arg57Ter	p.R57*	ENST00000338641	NM_000268.3	57	Cga/Tga																																																																														
H3F3A	0	MSKCC	GRCh37	1	226253377	226253377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	86	300	0	ENST00000366813.1:c.149G>A	p.Arg50His	p.R50H	ENST00000366813		50	cGt/cAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023789	27023792	+	frameshift_variant	Frame_Shift_Del	DEL	CTCA	CTCA	-			P-0026869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	259	556	0	ENST00000324856.7:c.896_899del	p.Leu299ArgfsTer63	p.L299Rfs*63	ENST00000324856	NM_006015.4	299	CTCAcg/cg																																																																														
APC	0	MSKCC	GRCh37	5	112162833	112162834	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	91	528	0	ENST00000257430.4:c.1438dup	p.Gln480ProfsTer5	p.Q480Pfs*5	ENST00000257430	NM_000038.5	479	-/C																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222991	53222991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	202	818	0	ENST00000375401.3:c.4081G>A	p.Glu1361Lys	p.E1361K	ENST00000375401	NM_004187.3	1361	Gag/Aag																																																																														
SDHB	0	MSKCC	GRCh37	1	17349132	17349132	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs146800605		P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	647	546	0	ENST00000375499.3:c.736A>G	p.Ile246Val	p.I246V	ENST00000375499	NM_003000.2	246	Atc/Gtc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138058	64138058	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	495	642	0	ENST00000334205.4:c.1981A>C	p.Lys661Gln	p.K661Q	ENST00000334205	NM_003942.2	661	Aag/Cag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49418601	49418601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	53	451	2	ENST00000301067.7:c.15913G>T	p.Ala5305Ser	p.A5305S	ENST00000301067	NM_003482.3	5305	Gct/Tct																																																																														
FLT1	0	MSKCC	GRCh37	13	28896455	28896455	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	72	549	0	ENST00000282397.4:c.2995C>G	p.Leu999Val	p.L999V	ENST00000282397	NM_002019.4	999	Ctg/Gtg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911683	32911683	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	359	446	1	ENST00000380152.3:c.3191C>A	p.Ser1064Ter	p.S1064*	ENST00000380152		1064	tCa/tAa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061228	38061228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	444	595	2	ENST00000250448.2:c.761del	p.Phe254SerfsTer67	p.F254Sfs*67	ENST00000250448	NM_004496.3	254	tTc/tc																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	435	548	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
CDK12	0	MSKCC	GRCh37	17	37627555	37627591	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTGTTAAAGATTTGAAAGCACAGGGAACAAGAGAC	TCTTGTTAAAGATTTGAAAGCACAGGGAACAAGAGAC	-			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	189	613	0	ENST00000447079.4:c.1473_1509del	p.Val492AsnfsTer3	p.V492Nfs*3	ENST00000447079	NM_015083.1	490	caTCTTGTTAAAGATTTGAAAGCACAGGGAACAAGAGAC/ca																																																																														
TCF3	0	MSKCC	GRCh37	19	1650217	1650217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	87	672	0	ENST00000344749.5:c.31G>C	p.Gly11Arg	p.G11R	ENST00000344749	NM_001136139.2	11	Ggc/Cgc																																																																														
MSH6	0	MSKCC	GRCh37	2	48026539	48026539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	321	449	0	ENST00000234420.5:c.1417C>G	p.Leu473Val	p.L473V	ENST00000234420	NM_000179.2	473	Ctg/Gtg																																																																														
DUSP4	0	MSKCC	GRCh37	8	29207468	29207468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	302	411	0	ENST00000240100.2:c.328G>C	p.Glu110Gln	p.E110Q	ENST00000240100	NM_001394.6	110	Gag/Cag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0026873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	48	717	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0026873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	47	636	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
XIAP	0	MSKCC	GRCh37	X	123041018	123041018	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs61752968		P-0026873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	19	139	0	ENST00000355640.3:c.1481T>A	p.Ile494Asn	p.I494N	ENST00000355640		494	aTt/aAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0026874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	47	462	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0026874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	46	525	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0026874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	80	711	1	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651931	36651932	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	63	525	0	ENST00000244741.5:c.55dup	p.Arg19ProfsTer17	p.R19Pfs*17	ENST00000244741	NM_000389.4	18	tgc/tgCc																																																																														
TSC1	0	MSKCC	GRCh37	9	135797342	135797343	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	44	387	0	ENST00000298552.3:c.526dup	p.Tyr176LeufsTer42	p.Y176Lfs*42	ENST00000298552	NM_001162426.1	176	tat/tTat																																																																														
MDM4	0	MSKCC	GRCh37	1	204511930	204511930	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2328	452	266	0	ENST00000367182.3:c.530A>T	p.Asn177Ile	p.N177I	ENST00000367182	NM_001278516.1	177	aAt/aTt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115869	8115873	+	frameshift_variant	Frame_Shift_Del	DEL	CATCT	CATCT	-			P-0026876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	202	608	0	ENST00000346208.3:c.1216_1220del	p.Ile406AlafsTer99	p.I406Afs*99	ENST00000346208		405	caCATCTcg/cacg																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50492748	50492765	+	inframe_deletion	In_Frame_Del	DEL	GAATTAGAGCAAGCCCTG	GAATTAGAGCAAGCCCTG	-			P-0026876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	226	520	0	ENST00000394963.4:c.1514_1531del	p.Glu505_Leu510del	p.E505_L510del	ENST00000394963	NM_003076.4	505	GAATTAGAGCAAGCCCTG/-																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089777	27089777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	214	488	0	ENST00000324856.7:c.2732+1G>T		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																															
TP53	0	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	340	718	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat																																																																														
KDR	0	MSKCC	GRCh37	4	55958788	55958788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	205	571	0	ENST00000263923.4:c.3065G>A	p.Arg1022Gln	p.R1022Q	ENST00000263923	NM_002253.2	1022	cGa/cAa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710633	114710634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	291	529	0	ENST00000543371.1:c.118_119insT	p.Asp40ValfsTer4	p.D40Vfs*4	ENST00000543371	NM_001198531.1	40	gat/gTat																																																																														
SOX9	0	MSKCC	GRCh37	17	70118948	70118949	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	336	689	0	ENST00000245479.2:c.521_522dup	p.Gln175ThrfsTer9	p.Q175Tfs*9	ENST00000245479	NM_000346.3	174	tac/tACac																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	189	292	0	ENST00000342988.3:c.1256G>A	p.Gly419Glu	p.G419E	ENST00000342988	NM_005359.5	419	gGg/gAg																																																																														
MLH1	0	MSKCC	GRCh37	3	37089008	37089008	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	133	266	1	ENST00000231790.2:c.1732-2A>T		p.X578_splice	ENST00000231790	NM_000249.3	578																																																																															
EPHA5	0	MSKCC	GRCh37	4	66233081	66233081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	186	357	0	ENST00000273854.3:c.1918G>T	p.Gly640Trp	p.G640W	ENST00000273854	NM_004439.5	640	Ggg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112174223	112174223	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	126	491	1	ENST00000257430.4:c.2932C>T	p.Gln978Ter	p.Q978*	ENST00000257430	NM_000038.5	978	Caa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112175220	112175221	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	58	311	0	ENST00000257430.4:c.3929_3930insTT	p.Lys1310AsnfsTer2	p.K1310Nfs*2	ENST00000257430	NM_000038.5	1310	aag/aaTTg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70982031	70982031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	135	690	0	ENST00000276594.2:c.65G>A	p.Ser22Asn	p.S22N	ENST00000276594	NM_024504.3	22	aGc/aAc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198257106	198257106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026671-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	10	467	2	ENST00000335508.6:c.3836C>T	p.Ala1279Val	p.A1279V	ENST00000335508	NM_012433.2	1279	gCt/gTt																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0026671-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			172	44	384	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
AKT1	0	MSKCC	GRCh37	14	105243058	105243059	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATGATGAAGGTGTTGGGCCGGGGCCGCTCCGTCTTC			P-0026671-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	30	598	1	ENST00000349310.3:c.189_224dup	p.Met63_Ile74dup	p.M63_I74dup	ENST00000349310	NM_001014432.1	63	atc/atGAAGACGGAGCGGCCCCGGCCCAACACCTTCATCATc																																																																														
CBFB	0	MSKCC	GRCh37	16	67116116	67116117	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0026671-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			92	36	276	0	ENST00000412916.2:c.401dup	p.Glu135GlyfsTer10	p.E135Gfs*10	ENST00000412916		134	cag/cAag																																																																														
FUBP1	0	MSKCC	GRCh37	1	78429999	78429999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	257	489	0	ENST00000370768.2:c.880A>G	p.Asn294Asp	p.N294D	ENST00000370768	NM_003902.3	294	Aat/Gat																																																																														
ATM	0	MSKCC	GRCh37	11	108186775	108186775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	465	640	0	ENST00000278616.4:c.6133G>C	p.Ala2045Pro	p.A2045P	ENST00000278616	NM_000051.3	2045	Gcc/Ccc																																																																														
MYC	0	MSKCC	GRCh37	8	128752756	128752756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	35	334	0	ENST00000377970.2:c.917C>T	p.Pro306Leu	p.P306L	ENST00000377970	NM_002467.4	306	cCt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579346	7579346	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0026707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	625	612	2	ENST00000269305.4:c.341T>A	p.Leu114Ter	p.L114*	ENST00000269305	NM_001126112.2	114	tTg/tAg																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2489788	2489788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	530	710	0	ENST00000355716.4:c.185G>A	p.Arg62His	p.R62H	ENST00000355716	NM_003820.2	62	cGt/cAt																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937953	36937953	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	1217	766	0	ENST00000361632.4:c.883T>C	p.Cys295Arg	p.C295R	ENST00000361632		295	Tgc/Cgc																																																																														
GATA1	0	MSKCC	GRCh37	X	48650568	48650568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	666	711	1	ENST00000376670.3:c.538C>T	p.Leu180Phe	p.L180F	ENST00000376670	NM_002049.3	180	Ctc/Ttc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	416	562	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16075152	16075152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	132	441	0	ENST00000268712.3:c.400C>G	p.Pro134Ala	p.P134A	ENST00000268712	NM_006311.3	134	Cca/Gca																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794882	242794882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	317	702	0	ENST00000334409.5:c.327C>A	p.Ser109Arg	p.S109R	ENST00000334409	NM_005018.2	109	agC/agA																																																																														
STK11	0	MSKCC	GRCh37	19	1207037	1207037	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	328	680	0	ENST00000326873.7:c.127del	p.Ala43ProfsTer8	p.A43Pfs*8	ENST00000326873	NM_000455.4	42	cGg/cg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602473	10602473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	302	565	1	ENST00000171111.5:c.1105G>T	p.Val369Leu	p.V369L	ENST00000171111	NM_203500.1	369	Gtg/Ttg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36945080	36945080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	184	667	0	ENST00000361632.4:c.18C>A	p.Asn6Lys	p.N6K	ENST00000361632		6	aaC/aaA																																																																														
CBL	0	MSKCC	GRCh37	11	119169139	119169139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	165	588	2	ENST00000264033.4:c.2323G>T	p.Asp775Tyr	p.D775Y	ENST00000264033	NM_005188.3	775	Gat/Tat																																																																														
FLCN	0	MSKCC	GRCh37	17	17122482	17122482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	137	671	0	ENST00000285071.4:c.913G>C	p.Glu305Gln	p.E305Q	ENST00000285071	NM_144997.5	305	Gaa/Caa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920012	1920012	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	170	652	0	ENST00000382891.5:c.1072C>G	p.Gln358Glu	p.Q358E	ENST00000382891	NM_133335.3	358	Caa/Gaa																																																																														
NSD1	0	MSKCC	GRCh37	5	176637232	176637232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	187	675	2	ENST00000439151.2:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000439151	NM_022455.4	611	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	118	390	0				ENST00000310581	NM_198253.2																																																																																
IGF2	0	MSKCC	GRCh37	11	2161483	2161483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	163	689	0	ENST00000434045.2:c.44C>T	p.Thr15Ile	p.T15I	ENST00000434045	NM_001127598.1	15	aCc/aTc																																																																														
VHL	0	MSKCC	GRCh37	3	10183758	10183761	+	missense_variant	Missense_Mutation	ONP	TCTG	TCTG	CTTT			P-0026711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	127	618	1	ENST00000256474.2:c.227_230delinsCTTT	p.Phe76_Cys77delinsSerPhe	p.F76_C77delinsSF	ENST00000256474	NM_000551.3	76	tTCTGc/tCTTTc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0026716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	231	419	1	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870969	12870969	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	212	421	0	ENST00000228872.4:c.197del	p.Asn66IlefsTer5	p.N66Ifs*5	ENST00000228872	NM_004064.3	66	Aat/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	110	487	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	75	586	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106151	27106151	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	67	511	0	ENST00000324856.7:c.5763del	p.Leu1922Ter	p.L1922*	ENST00000324856	NM_006015.4	1921	aCc/ac																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43749260	43749260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	27	563	0	ENST00000382044.4:c.1546G>T	p.Asp516Tyr	p.D516Y	ENST00000382044	NM_001141980.1	516	Gat/Tat																																																																														
TP53	0	MSKCC	GRCh37	17	7578401	7578402	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0026729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	718	650	15	ENST00000269305.4:c.526_528dupTGC	p.Cys176dup	p.C176dup	ENST00000269305	NM_001126112.2	176	-/TGC																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164769	36164769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	393	741	14	ENST00000300305.3:c.1106C>T	p.Ser369Leu	p.S369L	ENST00000300305		369	tCg/tTg																																																																														
IL7R	0	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0026729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	648	669	24	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg																																																																														
JAK2	0	MSKCC	GRCh37	9	5054810	5054810	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	511	538	5	ENST00000381652.3:c.862A>T	p.Ile288Phe	p.I288F	ENST00000381652	NM_004972.3	288	Att/Ttt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44920585	44920585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	209	520	2	ENST00000377967.4:c.1346G>T	p.Trp449Leu	p.W449L	ENST00000377967	NM_021140.2	449	tGg/tTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89725042	89725042	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0026733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	46	280	0	ENST00000371953.3:c.1027-2A>C		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
TEK	0	MSKCC	GRCh37	9	27228254	27228254	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	61	724	0	ENST00000380036.4:c.3251C>A	p.Ser1084Ter	p.S1084*	ENST00000380036	NM_000459.3	1084	tCa/tAa																																																																														
BIRC3	0	MSKCC	GRCh37	11	102201889	102201889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	67	626	0	ENST00000263464.3:c.1241A>G	p.Asn414Ser	p.N414S	ENST00000263464	NM_001165.4	414	aAt/aGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578276	7578276	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	274	696	0	ENST00000269305.4:c.573del	p.Gln192SerfsTer55	p.Q192Sfs*55	ENST00000269305	NM_001126112.2	191	ccT/cc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98239983	98239983	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0026733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	176	481	1	ENST00000331920.6:c.1349T>G	p.Leu450Arg	p.L450R	ENST00000331920	NM_000264.3	450	cTc/cGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	12	395	1	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
RHOA	0	MSKCC	GRCh37	3	49405954	49405954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	300	618	0	ENST00000418115.1:c.184G>A	p.Gly62Arg	p.G62R	ENST00000418115	NM_001664.2	62	Ggg/Agg																																																																														
CBFB	0	MSKCC	GRCh37	16	67070608	67070608	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	90	225	0	ENST00000412916.2:c.232C>T	p.Arg78Ter	p.R78*	ENST00000412916		78	Cga/Tga																																																																														
GATA3	0	MSKCC	GRCh37	10	8115806	8115809	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0026763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	170	575	0	ENST00000346208.3:c.1153_1156del	p.Phe385ProfsTer18	p.F385Pfs*18	ENST00000346208		384	gaCTTC/ga																																																																														
CDH1	0	MSKCC	GRCh37	16	68844202	68844202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	191	629	0	ENST00000261769.5:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000261769	NM_004360.3	264	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	12	291	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	12	351	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7572986	7572986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	25	363	0	ENST00000269305.4:c.1123C>T	p.Gln375Ter	p.Q375*	ENST00000269305	NM_001126112.2	375	Cag/Tag																																																																														
ASXL2	0	MSKCC	GRCh37	2	26022344	26022344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	177	355	0	ENST00000435504.4:c.313C>T	p.Gln105Ter	p.Q105*	ENST00000435504		105	Cag/Tag																																																																														
CDH1	0	MSKCC	GRCh37	16	68842666	68842666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	96	536	0	ENST00000261769.5:c.602C>A	p.Pro201His	p.P201H	ENST00000261769	NM_004360.3	201	cCt/cAt																																																																														
KDR	0	MSKCC	GRCh37	4	55955915	55955933	+	frameshift_variant	Frame_Shift_Del	DEL	TGTACACTCTGTCAAAAAT	TGTACACTCTGTCAAAAAT	-			P-0026768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	238	396	0	ENST00000263923.4:c.3229_3247del	p.Ile1077GlnfsTer19	p.I1077Qfs*19	ENST00000263923	NM_002253.2	1077	ATTTTTGACAGAGTGTACAca/ca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151891116	151891116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	161	299	0	ENST00000262189.6:c.4638G>T	p.Gln1546His	p.Q1546H	ENST00000262189	NM_170606.2	1546	caG/caT																																																																														
AMER1	0	MSKCC	GRCh37	X	63412396	63412404	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTTTACA	ATCTTTACA	TTTTTCT			P-0026768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	297	292	2	ENST00000330258.3:c.763_771delinsAGAAAAA	p.Cys255ArgfsTer22	p.C255Rfs*22	ENST00000330258	NM_152424.3	255	TGTAAAGAT/AGAAAAA																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0026769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	135	91	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0026769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	135	91	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	692	520	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc																																																																														
SYK	0	MSKCC	GRCh37	9	93607788	93607789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	101	383	0	ENST00000375746.1:c.496dupA	p.Met166AsnfsTer14	p.M166Nfs*14	ENST00000375746	NM_001174167.1	164	gaa/gAaa																																																																														
MDC1	0	MSKCC	GRCh37	6	30676081	30676081	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	330	341	0	ENST00000376406.3:c.2275G>T	p.Glu759Ter	p.E759*	ENST00000376406	NM_014641.2	759	Gag/Tag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499687	8499687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	179	374	0	ENST00000356435.5:c.2282G>A	p.Gly761Asp	p.G761D	ENST00000356435		761	gGc/gAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105512	27105513	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0026773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	95	226	0	ENST00000324856.7:c.5125-1dup		p.X1709_splice	ENST00000324856	NM_006015.4	1709																																																																															
RAD54L	0	MSKCC	GRCh37	1	46738191	46738191	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	93	345	0	ENST00000371975.4:c.1223T>C	p.Ile408Thr	p.I408T	ENST00000371975	NM_003579.3	408	aTt/aCt																																																																														
ELF3	0	MSKCC	GRCh37	1	201981502	201981513	+	frameshift_variant	Frame_Shift_Del	DEL	TCATTGAGCTGC	TCATTGAGCTGC	GCTCAGT			P-0026773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	115	539	3	ENST00000359651.3:c.416_427delinsGCTCAGT	p.Ile139SerfsTer20	p.I139Sfs*20	ENST00000359651		139	aTCATTGAGCTGCtg/aGCTCAGTtg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907415	32907415	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	94	291	0	ENST00000380152.3:c.1800T>A	p.Tyr600Ter	p.Y600*	ENST00000380152		600	taT/taA																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713660	30713666	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAAGG	GCCAAGG	-			P-0026773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	54	314	0	ENST00000359013.4:c.1062_1068del	p.Lys355ThrfsTer6	p.K355Tfs*6	ENST00000359013	NM_001024847.2	354	GCCAAGGgc/gc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50454841	50455077	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGAGTTCTTGGTACAATTAAAGAAACCCTTGGCCACCAACGTTTTTAAATTCAGGAATTTCACCAAGTCCGTAACAGTTTTAGCTCTCAAGGGTAGAATTTTTTTTTTAACTTTTTTGGTAATAATTGTATTGCATGCATTCCCCTTACACAGAAGGCTGGCATTTAATTGGGGTCTTGAACTCAATTGTGTTTTCTGCAGTTGGTAAACCTCACAAATGTGGATATTGTGGCCGA	ATGAGTTCTTGGTACAATTAAAGAAACCCTTGGCCACCAACGTTTTTAAATTCAGGAATTTCACCAAGTCCGTAACAGTTTTAGCTCTCAAGGGTAGAATTTTTTTTTTAACTTTTTTGGTAATAATTGTATTGCATGCATTCCCCTTACACAGAAGGCTGGCATTTAATTGGGGTCTTGAACTCAATTGTGTTTTCTGCAGTTGGTAAACCTCACAAATGTGGATATTGTGGCCGA	-			P-0026773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	28	3	0	ENST00000331340.3:c.590-201_625del		p.X197_splice	ENST00000331340	NM_006060.4	197																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	231	390	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	47	637	2	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	234	575	15	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	763	579	1	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281197	15281197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	89	689	0	ENST00000263388.2:c.5059G>A	p.Ala1687Thr	p.A1687T	ENST00000263388	NM_000435.2	1687	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	54	676	1	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	291	454	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	194	705	0	ENST00000269305.4:c.467G>A	p.Arg156His	p.R156H	ENST00000269305	NM_001126112.2	156	cGc/cAc																																																																														
RNF43	0	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	48	605	0	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	210	582	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	86	196	2	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	407	695	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	263	437	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
AXIN1	0	MSKCC	GRCh37	16	341230	341230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	335	696	0	ENST00000262320.3:c.2254G>A	p.Val752Met	p.V752M	ENST00000262320	NM_003502.3	752	Gtg/Atg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807363	3807364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	271	347	0	ENST00000262367.5:c.3623dupC	p.Gln1209ThrfsTer25	p.Q1209Tfs*25	ENST00000262367	NM_004380.2	1208	cca/ccCa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245586	41245587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	74	517	2	ENST00000357654.3:c.1961dup	p.Tyr655ValfsTer18	p.Y655Vfs*18	ENST00000357654	NM_007294.3	654	aag/aaAg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280142	66280142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	95	245	1	ENST00000273854.3:c.1547C>T	p.Thr516Met	p.T516M	ENST00000273854	NM_004439.5	516	aCg/aTg																																																																														
DICER1	0	MSKCC	GRCh37	14	95595941	95595941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	195	403	0	ENST00000343455.3:c.602G>A	p.Arg201His	p.R201H	ENST00000343455	NM_177438.2	201	cGc/cAc																																																																														
RYBP	23429	MSKCC	GRCh37	3	72427588	72427588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	136	209	0	ENST00000477973.2:c.900G>A	p.Arg301His	p.R301H	ENST00000477973	NM_012234.5	301	cGt/cAt																																																																														
POLE	0	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	332	645	0	ENST00000320574.5:c.6088delG	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																																																														
IGF2	0	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	77	590	4	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18641388	18641389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	87	198	0	ENST00000266497.5:c.2393dup	p.Asn798LysfsTer5	p.N798Kfs*5	ENST00000266497		796	cta/ctAa																																																																														
MSH2	0	MSKCC	GRCh37	2	47656969	47656969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	198	359	0	ENST00000233146.2:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000233146	NM_000251.2	389	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	167	404	2	ENST00000264010.4:c.950_951delCA	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																														
FLT4	0	MSKCC	GRCh37	5	180038451	180038451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	330	701	0	ENST00000261937.6:c.3566G>A	p.Arg1189His	p.R1189H	ENST00000261937	NM_182925.4	1189	cGc/cAc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50444318	50444318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	166	312	1	ENST00000331340.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000331340	NM_006060.4	83	cGa/cAa																																																																														
FLT4	0	MSKCC	GRCh37	5	180043973	180043973	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149033942		P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	319	568	1	ENST00000261937.6:c.3023C>T	p.Pro1008Leu	p.P1008L	ENST00000261937	NM_182925.4	1008	cCg/cTg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	414	760	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
KMT2C	0	MSKCC	GRCh37	7	151836855	151836855	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	254	430	2	ENST00000262189.6:c.14365C>T	p.Arg4789Ter	p.R4789*	ENST00000262189	NM_170606.2	4789	Cga/Tga																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138433374	138433374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	183	440	0	ENST00000289153.2:c.1238C>T	p.Thr413Met	p.T413M	ENST00000289153	NM_006219.2	413	aCg/aTg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	383	703	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
GLI1	0	MSKCC	GRCh37	12	57864217	57864218	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	52	376	0	ENST00000228682.2:c.1700dup	p.Gly568TrpfsTer74	p.G568Wfs*74	ENST00000228682	NM_005269.2	565	ttc/ttCc																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643296	38643296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	41	396	1	ENST00000299084.4:c.766C>T	p.Arg256Cys	p.R256C	ENST00000299084	NM_152594.2	256	Cgt/Tgt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25505430	25505431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	201	419	0	ENST00000264709.3:c.327dupG	p.Gln110AlafsTer14	p.Q110Afs*14	ENST00000264709	NM_175629.2	109	-/G																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821381	72821382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	154	431	0	ENST00000268489.5:c.10793dup	p.Pro3599SerfsTer67	p.P3599Sfs*67	ENST00000268489	NM_006885.3	3598	cct/ccCt																																																																														
ERCC4	0	MSKCC	GRCh37	16	14028124	14028124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	183	429	0	ENST00000311895.7:c.1178C>T	p.Ala393Val	p.A393V	ENST00000311895	NM_005236.2	393	gCa/gTa																																																																														
SESN1	0	MSKCC	GRCh37	6	109315691	109315692	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	192	443	0	ENST00000436639.2:c.1093dup	p.Arg365LysfsTer11	p.R365Kfs*11	ENST00000436639	NM_014454.2	365	aga/aAga																																																																														
TRAF7	0	MSKCC	GRCh37	16	2226090	2226090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	62	695	0	ENST00000326181.6:c.1787C>T	p.Thr596Met	p.T596M	ENST00000326181	NM_032271.2	596	aCg/aTg																																																																														
LMO1	0	MSKCC	GRCh37	11	8252045	8252045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	75	508	0	ENST00000335790.3:c.32C>A	p.Pro11Gln	p.P11Q	ENST00000335790	NM_002315.2	11	cCg/cAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49448408	49448408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	318	516	1	ENST00000301067.7:c.303del	p.Ser102AlafsTer28	p.S102Afs*28	ENST00000301067	NM_003482.3	101	ggG/gg																																																																														
PTPN11	0	MSKCC	GRCh37	12	112891121	112891121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	315	556	0	ENST00000351677.2:c.455G>A	p.Arg152His	p.R152H	ENST00000351677	NM_002834.3	152	cGc/cAc																																																																														
LATS2	0	MSKCC	GRCh37	13	21563104	21563104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	264	617	0	ENST00000382592.4:c.815G>A	p.Ser272Asn	p.S272N	ENST00000382592	NM_014572.2	272	aGc/aAc																																																																														
FOXO1	0	MSKCC	GRCh37	13	41239770	41239770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	376	669	3	ENST00000379561.5:c.580G>A	p.Val194Met	p.V194M	ENST00000379561	NM_002015.3	194	Gtg/Atg																																																																														
EZH1	0	MSKCC	GRCh37	17	40870487	40870487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	39	412	0	ENST00000428826.2:c.916G>A	p.Asp306Asn	p.D306N	ENST00000428826		306	Gac/Aac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11118596	11118596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	197	385	0	ENST00000344626.4:c.2020C>T	p.Pro674Ser	p.P674S	ENST00000344626	NM_003072.3	674	Ccg/Tcg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152098	11152098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	48	533	0	ENST00000344626.4:c.4286G>A	p.Arg1429His	p.R1429H	ENST00000344626	NM_003072.3	1429	cGc/cAc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212524	36212524	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	220	740	1	ENST00000222270.7:c.2275C>T	p.Gln759Ter	p.Q759*	ENST00000222270	NM_014727.1	759	Cag/Tag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221467	36221470	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	335	664	0	ENST00000222270.7:c.5230_5233del	p.Ser1744IlefsTer150	p.S1744Ifs*150	ENST00000222270	NM_014727.1	1742	acTCTG/ac																																																																														
RTEL1	0	MSKCC	GRCh37	20	62323163	62323165	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	286	475	0	ENST00000508582.2:c.2702_2704del	p.Lys901del	p.K901del	ENST00000508582		899	agGAAg/agg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803165	1803165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	506	712	1	ENST00000260795.2:c.517C>T	p.Arg173Cys	p.R173C	ENST00000260795		173	Cgc/Tgc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1919941	1919941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	88	611	3	ENST00000382891.5:c.1001G>A	p.Ser334Asn	p.S334N	ENST00000382891	NM_133335.3	334	aGc/aAc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153271234	153271234	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	103	304	0	ENST00000281708.4:c.544del	p.Ser182LeufsTer57	p.S182Lfs*57	ENST00000281708	NM_033632.3	182	Tct/ct																																																																														
FAT1	0	MSKCC	GRCh37	4	187524815	187524815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	292	512	3	ENST00000441802.2:c.10865C>T	p.Thr3622Met	p.T3622M	ENST00000441802	NM_005245.3	3622	aCg/aTg																																																																														
TERT	0	MSKCC	GRCh37	5	1294346	1294346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	255	579	0	ENST00000310581.5:c.655C>A	p.Pro219Thr	p.P219T	ENST00000310581	NM_198253.2	219	Ccg/Acg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38947490	38947490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	24	254	0	ENST00000357387.3:c.4190C>A	p.Pro1397His	p.P1397H	ENST00000357387	NM_152756.3	1397	cCt/cAt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522559	176522559	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	221	586	0	ENST00000292408.4:c.1656C>G	p.Cys552Trp	p.C552W	ENST00000292408	NM_213647.1	552	tgC/tgG																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32171591	32171591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	253	623	0	ENST00000375023.3:c.3187G>A	p.Ala1063Thr	p.A1063T	ENST00000375023	NM_004557.3	1063	Gcc/Acc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652144	36652145	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	303	576	0	ENST00000244741.5:c.269dup	p.Gly91ArgfsTer38	p.G91Rfs*38	ENST00000244741	NM_000389.4	89	ttg/ttGg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528427	157528427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	266	454	0	ENST00000346085.5:c.6152G>A	p.Gly2051Asp	p.G2051D	ENST00000346085	NM_020732.3	2051	gGc/gAc																																																																														
AGO2	0	MSKCC	GRCh37	8	141572597	141572597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	311	528	1	ENST00000220592.5:c.473C>T	p.Thr158Met	p.T158M	ENST00000220592	NM_012154.3	158	aCg/aTg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738636	145738637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	239	580	0	ENST00000428558.2:c.2427dup	p.Gln810AlafsTer74	p.Q810Afs*74	ENST00000428558	NM_004260.3	809	-/G																																																																														
TEK	0	MSKCC	GRCh37	9	27228299	27228299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	220	402	2	ENST00000380036.4:c.3296G>A	p.Arg1099Gln	p.R1099Q	ENST00000380036	NM_000459.3	1099	cGa/cAa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395101	139395101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	298	555	0	ENST00000277541.6:c.5837G>A	p.Arg1946His	p.R1946H	ENST00000277541	NM_017617.3	1946	cGc/cAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400020	139400020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	55	664	0	ENST00000277541.6:c.4328C>T	p.Pro1443Leu	p.P1443L	ENST00000277541	NM_017617.3	1443	cCg/cTg																																																																														
MED12	0	MSKCC	GRCh37	X	70354666	70354666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	47	564	1	ENST00000374080.3:c.4831C>T	p.Arg1611Cys	p.R1611C	ENST00000374080		1611	Cgt/Tgt																																																																														
AURKB	0	MSKCC	GRCh37	17	8108330	8108330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	102	553	0	ENST00000585124.1:c.894G>A	p.Met298Ile	p.M298I	ENST00000585124	NM_004217.3	298	atG/atA																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	57	487	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115975	8115976	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	77	250	0	ENST00000346208.3:c.1323dup	p.Met442HisfsTer65	p.M442Hfs*65	ENST00000346208		441	gcc/gCcc																																																																														
UPF1	0	MSKCC	GRCh37	19	18966765	18966765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	109	717	1	ENST00000262803.5:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000262803	NM_002911.3	526	Gcc/Acc																																																																														
MTOR	0	MSKCC	GRCh37	1	11199489	11199489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	94	320	0	ENST00000361445.4:c.5002C>G	p.Leu1668Val	p.L1668V	ENST00000361445	NM_004958.3	1668	Ctt/Gtt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120510787	120510787	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	134	388	0	ENST00000256646.2:c.1177A>C	p.Asn393His	p.N393H	ENST00000256646	NM_024408.3	393	Aac/Cac																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5549403	5549403	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	465	552	0	ENST00000397747.3:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000397747	NM_025239.3	144	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0026786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	104	428	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
NSD1	0	MSKCC	GRCh37	5	176721550	176721550	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	163	434	0	ENST00000439151.2:c.7181T>C	p.Ile2394Thr	p.I2394T	ENST00000439151	NM_022455.4	2394	aTt/aCt																																																																														
AR	0	MSKCC	GRCh37	X	66905872	66905872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	51	381	0	ENST00000374690.3:c.1789G>A	p.Ala597Thr	p.A597T	ENST00000374690	NM_000044.3	597	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0026841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	249	614	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
ATRX	0	MSKCC	GRCh37	X	76938326	76938326	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	137	519	0	ENST00000373344.5:c.2422C>T	p.Arg808Ter	p.R808*	ENST00000373344	NM_000489.3	808	Cga/Tga																																																																														
SETD2	0	MSKCC	GRCh37	3	47088102	47088102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	59	380	0	ENST00000409792.3:c.6973C>A	p.Gln2325Lys	p.Q2325K	ENST00000409792	NM_014159.6	2325	Cag/Aag																																																																														
MGA	0	MSKCC	GRCh37	15	42059350	42059354	+	missense_variant	Missense_Mutation	ONP	GTTGG	GTTGG	CTGGT			P-0026841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	44	452	0	ENST00000219905.7:c.9070_9074delinsCTGGT	p.Val3024_Gly3025delinsLeuVal	p.V3024_G3025delinsLV	ENST00000219905	NM_001164273.1	3024	GTTGGa/CTGGTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	327	465	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0026842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	207	517	0	ENST00000269305.4:c.920-1G>C		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
TGFBR1	0	MSKCC	GRCh37	9	101908787	101908787	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	141	316	0	ENST00000374994.4:c.1151T>G	p.Leu384Arg	p.L384R	ENST00000374994	NM_004612.2	384	cTc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	19	642	2	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																														
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	232	428	0	ENST00000288135.5:c.1676T>G	p.Val559Gly	p.V559G	ENST00000288135	NM_000222.2	559	gTt/gGt																																																																														
CBL	0	MSKCC	GRCh37	11	119148882	119148882	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	129	285	0	ENST00000264033.4:c.1102T>A	p.Tyr368Asn	p.Y368N	ENST00000264033	NM_005188.3	368	Tat/Aat																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	383	423	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7579315	7579316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	266	491	0	ENST00000269305.4:c.371dupG	p.Cys124TrpfsTer25	p.C124Wfs*25	ENST00000269305	NM_001126112.2	124	tgc/tgGc																																																																														
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	131	237	1	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	176	420	0	ENST00000274335.5:c.1746-2A>T		p.X582_splice	ENST00000274335		582																																																																															
TGFBR1	0	MSKCC	GRCh37	9	101891188	101891188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	164	365	0	ENST00000374994.4:c.149C>G	p.Thr50Arg	p.T50R	ENST00000374994	NM_004612.2	50	aCa/aGa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63553923	63553923	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	203	367	0	ENST00000307078.5:c.815+1G>T		p.X272_splice	ENST00000307078	NM_004655.3	272																																																																															
PTPRS	0	MSKCC	GRCh37	19	5222876	5222876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	93	487	0	ENST00000357368.4:c.2927G>T	p.Gly976Val	p.G976V	ENST00000357368	NM_002850.3	976	gGc/gTc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56176621	56176621	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	208	350	0	ENST00000399503.3:c.2171T>C	p.Leu724Pro	p.L724P	ENST00000399503	NM_005921.1	724	cTa/cCa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	80	327	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	115	576	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
STK11	0	MSKCC	GRCh37	19	1221229	1221229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	139	652	0	ENST00000326873.7:c.752G>T	p.Gly251Val	p.G251V	ENST00000326873	NM_000455.4	251	gGt/gTt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435431	18435431	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	100	318	0	ENST00000266497.5:c.417del	p.Arg140AspfsTer5	p.R140Dfs*5	ENST00000266497		139	tCc/tc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602551	10602551	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	142	622	0	ENST00000171111.5:c.1027del	p.Glu343ArgfsTer57	p.E343Rfs*57	ENST00000171111	NM_203500.1	343	Gag/ag																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713814	30713814	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	104	624	0	ENST00000359013.4:c.1214T>G	p.Leu405Arg	p.L405R	ENST00000359013	NM_001024847.2	405	cTc/cGc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52682371	52682371	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	17	332	0	ENST00000394830.3:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000394830	NM_018313.4	268	Caa/Taa																																																																														
BTK	0	MSKCC	GRCh37	X	100608279	100608279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	131	721	0	ENST00000308731.7:c.1811G>T	p.Ser604Ile	p.S604I	ENST00000308731	NM_000061.2	604	aGt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	54	498	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143324179	143324179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	41	349	0	ENST00000262992.4:c.284G>T	p.Gly95Val	p.G95V	ENST00000262992	NM_001101669.1	95	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	178	232	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	0	MSKCC	GRCh37	6	36651883	36651883	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	176	493	0	ENST00000244741.5:c.5C>G	p.Ser2Ter	p.S2*	ENST00000244741	NM_000389.4	2	tCa/tGa																																																																														
MUTYH	0	MSKCC	GRCh37	1	45796214	45796214	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	47	562	0	ENST00000372115.3:c.1450C>T	p.Gln484Ter	p.Q484*	ENST00000372115	NM_001048171.1	484	Cag/Tag																																																																														
FLT1	0	MSKCC	GRCh37	13	29041722	29041722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	42	424	0	ENST00000282397.4:c.97G>A	p.Glu33Lys	p.E33K	ENST00000282397	NM_002019.4	33	Gaa/Aaa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15978952	15978952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	46	521	0	ENST00000268712.3:c.3566G>A	p.Arg1189Lys	p.R1189K	ENST00000268712	NM_006311.3	1189	aGa/aAa																																																																														
CENPA	0	MSKCC	GRCh37	2	27015081	27015081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	41	548	0	ENST00000335756.4:c.183G>C	p.Leu61Phe	p.L61F	ENST00000335756	NM_001809.3	61	ttG/ttC																																																																														
RAF1	0	MSKCC	GRCh37	3	12632358	12632358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	55	567	1	ENST00000251849.4:c.1309G>A	p.Glu437Lys	p.E437K	ENST00000251849	NM_002880.3	437	Gag/Aag																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651973	36651984	+	frameshift_variant	Frame_Shift_Del	DEL	GCGACTGTGATG	GCGACTGTGATG	CAGT			P-0026723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	127	588	3	ENST00000244741.5:c.95_106delinsCAGT	p.Arg32ProfsTer13	p.R32Pfs*13	ENST00000244741	NM_000389.4	32	cGCGACTGTGATGcg/cCAGTcg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509078	106509078	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62001903		P-0026723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	91	501	0	ENST00000359195.3:c.1072G>A	p.Asp358Asn	p.D358N	ENST00000359195	NM_002649.2	358	Gac/Aac																																																																														
PTEN	0	MSKCC	GRCh37	10	89692893	89692893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	67	376	1	ENST00000371953.3:c.377C>T	p.Ala126Val	p.A126V	ENST00000371953	NM_000314.4	126	gCt/gTt																																																																														
MSH6	0	MSKCC	GRCh37	2	48032088	48032088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	38	369	0	ENST00000234420.5:c.3478G>A	p.Val1160Ile	p.V1160I	ENST00000234420	NM_000179.2	1160	Gtc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7578204	7578216	+	frameshift_variant	Frame_Shift_Del	DEL	ACTATGTCGAAAA	ACTATGTCGAAAA	-			P-0026725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	104	811	0	ENST00000269305.4:c.633_645del	p.Phe212TrpfsTer31	p.F212Wfs*31	ENST00000269305	NM_001126112.2	211	acTTTTCGACATAGT/ac																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589612	67589613	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAGTC			P-0026725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	55	378	0	ENST00000274335.5:c.1376_1381dup	p.Ser460_Arg461insGlnSer	p.S460_R461insQS	ENST00000274335		459	aaa/aAAAGTCaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	112	585	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TBX3	0	MSKCC	GRCh37	12	115115416	115115416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	152	653	5	ENST00000257566.3:c.910C>T	p.Arg304Trp	p.R304W	ENST00000257566	NM_016569.3	304	Cgg/Tgg																																																																														
CDH1	0	MSKCC	GRCh37	16	68857482	68857482	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	130	606	0	ENST00000261769.5:c.2119del	p.Ile707PhefsTer15	p.I707Ffs*15	ENST00000261769	NM_004360.3	706	cAa/ca																																																																														
SETD2	0	MSKCC	GRCh37	3	47164508	47164508	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201756643		P-0026728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	223	392	0	ENST00000409792.3:c.1618C>T	p.Arg540Ter	p.R540*	ENST00000409792	NM_014159.6	540	Cga/Tga																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0026730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	323	502	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
CYSLTR2	0	MSKCC	GRCh37	13	49281770	49281770	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	222	711	0	ENST00000282018.3:c.817A>G	p.Thr273Ala	p.T273A	ENST00000282018	NM_020377.2	273	Aca/Gca																																																																														
CBFB	0	MSKCC	GRCh37	16	67063372	67063372	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	172	509	0	ENST00000412916.2:c.62T>C	p.Leu21Pro	p.L21P	ENST00000412916		21	cTg/cCg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021716	31021722	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TCCGGGT	TCCGGGT	-			P-0026730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	216	531	0	ENST00000375687.4:c.1715_1719+2del		p.X572_splice	ENST00000375687	NM_015338.5	572																																																																															
XIAP	0	MSKCC	GRCh37	X	123040912	123040912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	52	507	1	ENST00000355640.3:c.1375G>A	p.Ala459Thr	p.A459T	ENST00000355640		459	Gct/Act																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242481	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAA	TTAAGAGAAGCAA	C	rs397509368		P-0026732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	52	590	0	ENST00000275493.2:c.2239_2251delinsC	p.Leu747_Thr751delinsPro	p.L747_T751delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAAca/Cca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	41	558	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715724	30715724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	29	394	0	ENST00000359013.4:c.1457G>A	p.Cys486Tyr	p.C486Y	ENST00000359013	NM_001024847.2	486	tGt/tAt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38064160	38064160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	199	658	0	ENST00000250448.2:c.18G>C	p.Lys6Asn	p.K6N	ENST00000250448	NM_004496.3	6	aaG/aaC																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	92	339	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376152	118376152	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	129	537	0	ENST00000534358.1:c.9545A>G	p.Asn3182Ser	p.N3182S	ENST00000534358	NM_005933.3	3182	aAt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	218	469	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	322	641	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CARD11	0	MSKCC	GRCh37	7	2968259	2968259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	616	770	2	ENST00000396946.4:c.1727G>A	p.Arg576His	p.R576H	ENST00000396946	NM_032415.4	576	cGc/cAc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	133	383	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806171	1806171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	138	738	1	ENST00000260795.2:c.1190G>A	p.Arg397His	p.R397H	ENST00000260795		397	cGc/cAc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78429273	78429286	+	frameshift_variant	Frame_Shift_Del	DEL	AATCCAGTTTTCCC	AATCCAGTTTTCCC	-			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	37	498	0	ENST00000370768.2:c.1156_1169del	p.Gly386AsnfsTer7	p.G386Nfs*7	ENST00000370768	NM_003902.3	386	GGGAAAACTGGATTa/a																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42851204	42851204	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	64	413	0	ENST00000398585.3:c.689A>T	p.Asn230Ile	p.N230I	ENST00000398585	NM_001135099.1	230	aAt/aTt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266092	41266097	+	inframe_deletion	In_Frame_Del	DEL	ACCTGG	ACCTGG	-			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	126	302	0	ENST00000349496.5:c.91_96del	p.Leu31_Asp32del	p.L31_D32del	ENST00000349496	NM_001904.3	30	tACCTGGac/tac																																																																														
PREX2	0	MSKCC	GRCh37	8	69009278	69009278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	114	476	0	ENST00000288368.4:c.2395G>C	p.Ala799Pro	p.A799P	ENST00000288368	NM_024870.2	799	Gcc/Ccc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391808	139391808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	410	577	1	ENST00000277541.6:c.6383C>T	p.Pro2128Leu	p.P2128L	ENST00000277541	NM_017617.3	2128	cCg/cTg																																																																														
BCL2	0	MSKCC	GRCh37	18	60795958	60795958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	409	634	0	ENST00000333681.4:c.620G>A	p.Arg207Gln	p.R207Q	ENST00000333681		207	cGg/cAg																																																																														
NF1	0	MSKCC	GRCh37	17	29654718	29654718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	113	415	0	ENST00000358273.4:c.5470A>G	p.Ile1824Val	p.I1824V	ENST00000358273	NM_001042492.2	1824	Atc/Gtc																																																																														
MST1R	0	MSKCC	GRCh37	3	49934975	49934976	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CGGAGGTGCCGTCTACC			P-0026756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	102	656	0	ENST00000296474.3:c.2007_2023dup	p.Val675GlyfsTer2	p.V675Gfs*2	ENST00000296474	NM_002447.2	675	gtg/gGGTAGACGGCACCTCCGtg																																																																														
MST1R	0	MSKCC	GRCh37	3	49935967	49935967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	180	658	0	ENST00000296474.3:c.1703C>A	p.Pro568Gln	p.P568Q	ENST00000296474	NM_002447.2	568	cCa/cAa																																																																														
NSD1	0	MSKCC	GRCh37	5	176720987	176720987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	137	510	0	ENST00000439151.2:c.6618C>G	p.Asp2206Glu	p.D2206E	ENST00000439151	NM_022455.4	2206	gaC/gaG																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839780	27839780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	108	576	0	ENST00000328488.2:c.314T>C	p.Phe105Ser	p.F105S	ENST00000328488	NM_003533.2	105	tTt/tCt																																																																														
TP53	0	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	317	648	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45651322	45651322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	124	487	0	ENST00000407780.3:c.703G>C	p.Asp235His	p.D235H	ENST00000407780	NM_001283052.1	235	Gac/Cac																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158584	26158584	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	104	471	0	ENST00000289316.2:c.187A>T	p.Met63Leu	p.M63L	ENST00000289316	NM_138720.2	63	Atg/Ttg																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	209	807	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40770576	40770576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	45	542	1	ENST00000373198.4:c.2806C>T	p.Arg936Ter	p.R936*	ENST00000373198	NM_133170.3	936	Cga/Tga																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166103	118166103	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	73	408	0	ENST00000369448.3:c.613C>G	p.His205Asp	p.H205D	ENST00000369448	NM_017709.3	205	Cac/Gac																																																																														
NCOR1	0	MSKCC	GRCh37	17	16004603	16004603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	171	468	1	ENST00000268712.3:c.2651G>C	p.Ser884Thr	p.S884T	ENST00000268712	NM_006311.3	884	aGc/aCc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970955	21970979	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCAGCCGCGCGCAGGTACCGTGC	CCGCAGCCGCGCGCAGGTACCGTGC	GCG			P-0026760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	233	637	4	ENST00000304494.5:c.379_403delinsCGC	p.Ala127ArgfsTer12	p.A127Rfs*12	ENST00000304494	NM_000077.4	127	GCACGGTACCTGCGCGCGGCTGCGGgg/CGCgg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970955	21970979	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCAGCCGCGCGCAGGTACCGTGC	CCGCAGCCGCGCGCAGGTACCGTGC	GCG			P-0026760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	233	637	4	ENST00000304494.5:c.379_403delinsCGC	p.Ala127ArgfsTer12	p.A127Rfs*12	ENST00000304494	NM_000077.4	127	GCACGGTACCTGCGCGCGGCTGCGGgg/CGCgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	112	420	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	99	182	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	99	182	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	99	182	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097621	27097622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	69	386	0	ENST00000324856.7:c.3216dup	p.Trp1073MetfsTer32	p.W1073Mfs*32	ENST00000324856	NM_006015.4	1070	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0026790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	165	433	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
LATS2	0	MSKCC	GRCh37	13	21562441	21562441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	49	151	0	ENST00000382592.4:c.1478C>T	p.Ala493Val	p.A493V	ENST00000382592	NM_014572.2	493	gCg/gTg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12028614	12028614	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	106	159	0	ENST00000353533.5:c.817G>C	p.Glu273Gln	p.E273Q	ENST00000353533	NM_003010.3	273	Gaa/Caa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12028644	12028645	+	missense_variant	Missense_Mutation	DNP	GG	GG	CA			P-0026790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	126	191	0	ENST00000353533.5:c.847_848delinsCA	p.Gly283Gln	p.G283Q	ENST00000353533	NM_003010.3	283	GGa/CAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	171	540	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0026794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	214	414	1	ENST00000256078.4:c.34_35delGGinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40770576	40770576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	245	488	0	ENST00000373198.4:c.2806C>T	p.Arg936Ter	p.R936*	ENST00000373198	NM_133170.3	936	Cga/Tga																																																																														
PGR	0	MSKCC	GRCh37	11	100998972	100998972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	116	497	1	ENST00000325455.5:c.830C>T	p.Ala277Val	p.A277V	ENST00000325455	NM_001202474.3	277	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	77	460	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0026796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	182	885	1	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	65	357	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
KDR	0	MSKCC	GRCh37	4	55984812	55984812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	124	563	1	ENST00000263923.4:c.317G>A	p.Arg106Gln	p.R106Q	ENST00000263923	NM_002253.2	106	cGg/cAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573666	48573666	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	21	334	2	ENST00000342988.3:c.249+1G>T		p.X83_splice	ENST00000342988	NM_005359.5	83																																																																															
APC	0	MSKCC	GRCh37	5	112176008	112176033	+	frameshift_variant	Frame_Shift_Del	DEL	GAAATACTAGAAGAATGTATTATTTC	GAAATACTAGAAGAATGTATTATTTC	A			P-0026796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	42	274	0	ENST00000257430.4:c.4717_4742delinsA	p.Glu1573MetfsTer69	p.E1573Mfs*69	ENST00000257430	NM_000038.5	1573	GAAATACTAGAAGAATGTATTATTTCt/At																																																																														
UPF1	0	MSKCC	GRCh37	19	18967089	18967089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	240	610	1	ENST00000262803.5:c.1804G>A	p.Ala602Thr	p.A602T	ENST00000262803	NM_002911.3	602	Gca/Aca																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054920	176054920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	71	399	5	ENST00000367669.3:c.1133G>A	p.Arg378His	p.R378H	ENST00000367669	NM_022457.5	378	cGt/cAt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115852	8115853	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-	rs1085307641		P-0026797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	203	550	0	ENST00000346208.3:c.1198_1199del	p.Met400ValfsTer106	p.M400Vfs*106	ENST00000346208		400	ATg/g																																																																														
PRDM1	0	MSKCC	GRCh37	6	106554277	106554277	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	42	394	0	ENST00000369096.4:c.1805C>G	p.Pro602Arg	p.P602R	ENST00000369096	NM_001198.3	602	cCt/cGt																																																																														
HNF1A	0	MSKCC	GRCh37	12	121416665	121416665	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026798-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	258	702	2	ENST00000257555.6:c.94G>T	p.Glu32Ter	p.E32*	ENST00000257555		32	Gag/Tag																																																																														
HNF1A	0	MSKCC	GRCh37	12	121431437	121431437	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026798-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	313	651	0	ENST00000257555.6:c.641T>A	p.Leu214Gln	p.L214Q	ENST00000257555		214	cTg/cAg																																																																														
MED12	0	MSKCC	GRCh37	X	70348491	70348491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026798-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	224	464	0	ENST00000374080.3:c.3398C>A	p.Ala1133Asp	p.A1133D	ENST00000374080		1133	gCc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	235	506	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	795	405	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	246	196	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	242	421	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa																																																																														
MITF	0	MSKCC	GRCh37	3	70014356	70014356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	213	478	0	ENST00000352241.4:c.1520G>A	p.Arg507Gln	p.R507Q	ENST00000352241	NM_198159.2	507	cGg/cAg																																																																														
NF1	0	MSKCC	GRCh37	17	29550586	29550586	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	160	282	0	ENST00000358273.4:c.1845+1G>A		p.X615_splice	ENST00000358273	NM_001042492.2	615																																																																															
LYN	0	MSKCC	GRCh37	8	56864630	56864630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	262	687	0	ENST00000519728.1:c.593G>A	p.Arg198Gln	p.R198Q	ENST00000519728	NM_002350.3	198	cGa/cAa																																																																														
TERT	0	MSKCC	GRCh37	5	1294911	1294911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	305	130	0	ENST00000310581.5:c.194C>T	p.Pro65Leu	p.P65L	ENST00000310581	NM_198253.2	65	cCc/cTc																																																																														
PREX2	0	MSKCC	GRCh37	8	68968095	68968095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	310	509	0	ENST00000288368.4:c.1124G>T	p.Trp375Leu	p.W375L	ENST00000288368	NM_024870.2	375	tGg/tTg																																																																														
TERT	0	MSKCC	GRCh37	5	1295348	1295348	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0026804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2352	316	484	1				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	338	514	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	13	259	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0026807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	33	419	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
PTEN	0	MSKCC	GRCh37	10	89720876	89720876	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0026807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	47	291	0	ENST00000371953.3:c.1026+1G>C		p.X342_splice	ENST00000371953	NM_000314.4	342																																																																															
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	581	614	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021583	31021583	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	638	461	0	ENST00000375687.4:c.1582G>T	p.Glu528Ter	p.E528*	ENST00000375687	NM_015338.5	528	Gag/Tag																																																																														
NSD1	0	MSKCC	GRCh37	5	176618930	176618930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	260	537	0	ENST00000439151.2:c.973G>C	p.Asp325His	p.D325H	ENST00000439151	NM_022455.4	325	Gat/Cat																																																																														
NSD1	0	MSKCC	GRCh37	5	176618995	176618995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	217	486	0	ENST00000439151.2:c.1038G>T	p.Leu346Phe	p.L346F	ENST00000439151	NM_022455.4	346	ttG/ttT																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163648	32163648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	135	452	0	ENST00000375023.3:c.5578C>A	p.Arg1860Ser	p.R1860S	ENST00000375023	NM_004557.3	1860	Cgc/Agc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	190	744	0	ENST00000250448.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000250448	NM_004496.3	219	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	82	639	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	68	378	0	ENST00000342988.3:c.1156G>C	p.Gly386Arg	p.G386R	ENST00000342988	NM_005359.5	386	Ggt/Cgt																																																																														
ELF3	0	MSKCC	GRCh37	1	201983120	201983121	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	105	655	0	ENST00000359651.3:c.970dup	p.Met324AsnfsTer147	p.M324Nfs*147	ENST00000359651		323	-/A																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50490711	50490711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	79	605	0	ENST00000394963.4:c.1348G>A	p.Gly450Ser	p.G450S	ENST00000394963	NM_003076.4	450	Ggt/Agt																																																																														
EP300	0	MSKCC	GRCh37	22	41569715	41569715	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	62	460	0	ENST00000263253.7:c.4706A>G	p.Lys1569Arg	p.K1569R	ENST00000263253	NM_001429.3	1569	aAg/aGg																																																																														
SETD2	0	MSKCC	GRCh37	3	47162779	47162779	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	29	418	0	ENST00000409792.3:c.3347A>C	p.Lys1116Thr	p.K1116T	ENST00000409792	NM_014159.6	1116	aAa/aCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0026814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	50	497	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023905	27023905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	27	175	0	ENST00000324856.7:c.1011G>A	p.Trp337Ter	p.W337*	ENST00000324856	NM_006015.4	337	tgG/tgA																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134880957	134880957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770406411		P-0026814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	53	511	0	ENST00000398015.3:c.1520G>A	p.Arg507His	p.R507H	ENST00000398015	NM_004441.4	507	cGt/cAt																																																																														
NF2	0	MSKCC	GRCh37	22	30070871	30070871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	78	657	1	ENST00000338641.4:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000338641	NM_000268.3	463	Gag/Aag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49448536	49448536	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0026814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	65	474	0	ENST00000301067.7:c.177-2A>C		p.X59_splice	ENST00000301067	NM_003482.3	59																																																																															
SLX4	0	MSKCC	GRCh37	16	3639873	3639873	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	65	678	0	ENST00000294008.3:c.3766C>G	p.Leu1256Val	p.L1256V	ENST00000294008	NM_032444.2	1256	Ctg/Gtg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63553963	63553963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	100	439	0	ENST00000307078.5:c.776C>T	p.Ala259Val	p.A259V	ENST00000307078	NM_004655.3	259	gCg/gTg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25967174	25967174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	36	271	0	ENST00000435504.4:c.2032G>A	p.Ala678Thr	p.A678T	ENST00000435504		678	Gcc/Acc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29095896	29095896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	73	617	0	ENST00000328354.6:c.938T>C	p.Val313Ala	p.V313A	ENST00000328354	NM_007194.3	313	gTg/gCg																																																																														
KIT	0	MSKCC	GRCh37	4	55603372	55603372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	42	427	0	ENST00000288135.5:c.2728G>A	p.Asp910Asn	p.D910N	ENST00000288135	NM_000222.2	910	Gat/Aat																																																																														
KDR	0	MSKCC	GRCh37	4	55970913	55970913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	72	510	0	ENST00000263923.4:c.1884G>T	p.Glu628Asp	p.E628D	ENST00000263923	NM_002253.2	628	gaG/gaT																																																																														
DROSHA	0	MSKCC	GRCh37	5	31511237	31511238	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0026814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	91	750	0	ENST00000344624.3:c.1336_1337del	p.Asp446GlnfsTer3	p.D446Qfs*3	ENST00000344624		446	GAc/c																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	244	651	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	354	495	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
NSD1	0	MSKCC	GRCh37	5	176637574	176637574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	169	457	0	ENST00000439151.2:c.2174C>T	p.Thr725Met	p.T725M	ENST00000439151	NM_022455.4	725	aCg/aTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023255	27023260	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGC	CCCGGC	GG			P-0026539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	110	271	2	ENST00000324856.7:c.361_366delinsGG	p.Pro121GlyfsTer110	p.P121Gfs*110	ENST00000324856	NM_006015.4	121	CCCGGC/GG																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105963	27105966	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0026539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	174	415	0	ENST00000324856.7:c.5574_5577del	p.His1858GlnfsTer24	p.H1858Qfs*24	ENST00000324856	NM_006015.4	1858	caCTTC/ca																																																																														
FLT1	0	MSKCC	GRCh37	13	28891728	28891728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	161	494	0	ENST00000282397.4:c.3293C>A	p.Ser1098Tyr	p.S1098Y	ENST00000282397	NM_002019.4	1098	tCt/tAt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78858812	78858812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	239	531	0	ENST00000306801.3:c.1847G>T	p.Arg616Leu	p.R616L	ENST00000306801	NM_020761.2	616	cGc/cTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860728	151860728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	168	384	0	ENST00000262189.6:c.9934C>T	p.Gln3312Ter	p.Q3312*	ENST00000262189	NM_170606.2	3312	Cag/Tag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205052	38205052	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0026539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	263	567	0	ENST00000317025.8:c.638C>G	p.Ser213Ter	p.S213*	ENST00000317025	NM_023034.1	213	tCa/tGa																																																																														
NF1	0	MSKCC	GRCh37	17	29528490	29528490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	46	438	0	ENST00000358273.4:c.1247G>A	p.Arg416Gln	p.R416Q	ENST00000358273	NM_001042492.2	416	cGa/cAa																																																																														
STK11	0	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	129	574	0	ENST00000326873.7:c.290+1G>A		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	42	312	0	ENST00000263967.3:c.1034A>G	p.Asn345Ser	p.N345S	ENST00000263967	NM_006218.2	345	aAt/aGt																																																																														
NSD1	0	MSKCC	GRCh37	5	176694575	176694575	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	29	320	0	ENST00000439151.2:c.5159T>C	p.Leu1720Pro	p.L1720P	ENST00000439151	NM_022455.4	1720	cTg/cCg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	115	224	0	ENST00000349496.5:c.95A>C	p.Asp32Ala	p.D32A	ENST00000349496	NM_001904.3	32	gAc/gCc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176519325	176519325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	195	333	1	ENST00000292408.4:c.731G>A	p.Arg244Gln	p.R244Q	ENST00000292408	NM_213647.1	244	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	176	245	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																														
APC	0	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	256	289	0	ENST00000257430.4:c.1370C>A	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tAa																																																																														
TP53	0	MSKCC	GRCh37	17	7576911	7576912	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0026674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	479	381	0	ENST00000269305.4:c.934_935del	p.Thr312GlnfsTer24	p.T312Qfs*24	ENST00000269305	NM_001126112.2	312	ACc/c																																																																														
TP53	0	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0026675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	769	383	4	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
RB1	0	MSKCC	GRCh37	13	48955540	48955541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	275	309	0	ENST00000267163.4:c.1656_1657insG	p.Cys553ValfsTer2	p.C553Vfs*2	ENST00000267163	NM_000321.2	552	-/G																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748819	43748819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	100	526	0	ENST00000382044.4:c.1987G>C	p.Gly663Arg	p.G663R	ENST00000382044	NM_001141980.1	663	Ggg/Cgg																																																																														
HGF	0	MSKCC	GRCh37	7	81374428	81374428	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	123	305	0	ENST00000222390.5:c.634A>G	p.Met212Val	p.M212V	ENST00000222390	NM_000601.4	212	Atg/Gtg																																																																														
CDK12	0	MSKCC	GRCh37	17	37646961	37646961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	86	419	0	ENST00000447079.4:c.2083C>T	p.Gln695Ter	p.Q695*	ENST00000447079	NM_015083.1	695	Cag/Tag																																																																														
CDK12	0	MSKCC	GRCh37	17	37657611	37657612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATGGAAGGATTGG			P-0026676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	64	397	0	ENST00000447079.4:c.2532_2545dup	p.Tyr849TrpfsTer24	p.Y849Wfs*24	ENST00000447079	NM_015083.1	843	cta/ctAATGGAAGGATTGGa																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	73	228	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	55	256	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	72	205	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
SMAD3	0	MSKCC	GRCh37	15	67479811	67479811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	114	315	0	ENST00000327367.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000327367	NM_005902.3	373	cGc/cAc																																																																														
CARD11	0	MSKCC	GRCh37	7	2951838	2951838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199916182		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	87	425	0	ENST00000396946.4:c.3112G>A	p.Ala1038Thr	p.A1038T	ENST00000396946	NM_032415.4	1038	Gcc/Acc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	50	238	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	70	276	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	113	402	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	65	279	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
DIS3	0	MSKCC	GRCh37	13	73346884	73346884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	51	206	1	ENST00000377767.4:c.1333del	p.Ser445HisfsTer20	p.S445Hfs*20	ENST00000377767	NM_014953.3	445	Tca/ca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	82	333	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739031	40739031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	79	314	2	ENST00000373198.4:c.3253G>A	p.Val1085Ile	p.V1085I	ENST00000373198	NM_133170.3	1085	Gtc/Atc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	62	252	1	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	76	280	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2225603	2225603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	96	407	1	ENST00000326181.6:c.1606G>A	p.Gly536Ser	p.G536S	ENST00000326181	NM_032271.2	536	Ggc/Agc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	125	486	2	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	27	262	2	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	79	268	2	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	44	188	0	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																																																														
PTCH1	0	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	83	291	0	ENST00000331920.6:c.290delA	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																														
BRAF	0	MSKCC	GRCh37	7	140434413	140434413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	66	268	0	ENST00000288602.6:c.2285C>T	p.Ala762Val	p.A762V	ENST00000288602	NM_004333.4	762	gCg/gTg																																																																														
MSH2	0	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	84	335	0	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																																																														
ERBB4	0	MSKCC	GRCh37	2	212543829	212543829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	53	269	1	ENST00000342788.4:c.1570C>T	p.Arg524Cys	p.R524C	ENST00000342788	NM_005235.2	524	Cgc/Tgc																																																																														
CDK12	0	MSKCC	GRCh37	17	37618715	37618716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	56	355	2	ENST00000447079.4:c.397dupA	p.Ser133LysfsTer24	p.S133Kfs*24	ENST00000447079	NM_015083.1	131	gaa/gAaa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15967432	15967432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	87	351	0	ENST00000268712.3:c.5171G>A	p.Arg1724Gln	p.R1724Q	ENST00000268712	NM_006311.3	1724	cGg/cAg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806569	1806569	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182935140		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	103	377	0	ENST00000260795.2:c.1285G>A	p.Ala429Thr	p.A429T	ENST00000260795		429	Gcg/Acg																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459777	149459777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	96	431	1	ENST00000286301.3:c.430C>T	p.Arg144Cys	p.R144C	ENST00000286301	NM_005211.3	144	Cgt/Tgt																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46546324	46546324	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	71	239	2	ENST00000262741.5:c.205del	p.Asp69IlefsTer7	p.D69Ifs*7	ENST00000262741	NM_003629.3	69	Gat/at																																																																														
FAT1	0	MSKCC	GRCh37	4	187538941	187538941	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	60	273	1	ENST00000441802.2:c.8799delA	p.Gly2934ValfsTer3	p.G2934Vfs*3	ENST00000441802	NM_005245.3	2933	caA/ca																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	83	395	2	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56494881	56494881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	114	294	1	ENST00000267101.3:c.3238C>T	p.Arg1080Cys	p.R1080C	ENST00000267101	NM_001982.3	1080	Cgt/Tgt																																																																														
TAP1	0	MSKCC	GRCh37	6	32814948	32814948	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	156	326	0	ENST00000354258.4:c.2117del	p.Gly706ValfsTer12	p.G706Vfs*12	ENST00000354258	NM_000593.5	706	gGt/gt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144027	11144027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	104	385	0	ENST00000344626.4:c.3608G>A	p.Arg1203His	p.R1203H	ENST00000344626	NM_003072.3	1203	cGc/cAc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589609	67589610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	59	190	0	ENST00000274335.5:c.1378dupA	p.Ser460LysfsTer5	p.S460Kfs*5	ENST00000274335		458	gaa/gAaa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15938117	15938117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	60	188	0	ENST00000268712.3:c.7097C>T	p.Thr2366Met	p.T2366M	ENST00000268712	NM_006311.3	2366	aCg/aTg																																																																														
TCF3	0	MSKCC	GRCh37	19	1621185	1621185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	96	410	1	ENST00000344749.5:c.961C>T	p.Arg321Ter	p.R321*	ENST00000344749	NM_001136139.2	321	Cga/Tga																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021277	31021277	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	33	311	0	ENST00000375687.4:c.1281del	p.Lys427AsnfsTer35	p.K427Nfs*35	ENST00000375687	NM_015338.5	426	Aaa/aa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228164	36228164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	87	355	0	ENST00000222270.7:c.7550G>A	p.Arg2517Gln	p.R2517Q	ENST00000222270	NM_014727.1	2517	cGg/cAg																																																																														
TSC2	0	MSKCC	GRCh37	16	2115581	2115581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	130	415	1	ENST00000219476.3:c.1661C>T	p.Ser554Leu	p.S554L	ENST00000219476	NM_000548.3	554	tCg/tTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49437711	49437713	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	103	377	0	ENST00000301067.7:c.5257_5259del	p.Lys1753del	p.K1753del	ENST00000301067	NM_003482.3	1753	AAG/-																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146944	38146945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	101	524	0	ENST00000317025.8:c.3197dup	p.Asn1066LysfsTer14	p.N1066Kfs*14	ENST00000317025	NM_023034.1	1066	aac/aaAc																																																																														
FLT4	0	MSKCC	GRCh37	5	180047947	180047947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	74	383	2	ENST00000261937.6:c.2228C>T	p.Ala743Val	p.A743V	ENST00000261937	NM_182925.4	743	gCg/gTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89685289	89685289	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	54	195	1	ENST00000371953.3:c.188delA	p.Asn63ThrfsTer36	p.N63Tfs*36	ENST00000371953	NM_000314.4	62	Aaa/aa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87635191	87635191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	32	320	0	ENST00000277120.3:c.2243C>T	p.Thr748Met	p.T748M	ENST00000277120		748	aCg/aTg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912140	114912140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	83	360	0	ENST00000543371.1:c.1210C>T	p.Arg404Trp	p.R404W	ENST00000543371	NM_001198531.1	404	Cgg/Tgg																																																																														
MTOR	0	MSKCC	GRCh37	1	11227537	11227537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	85	349	0	ENST00000361445.4:c.4291G>A	p.Gly1431Arg	p.G1431R	ENST00000361445	NM_004958.3	1431	Gga/Aga																																																																														
SPEN	0	MSKCC	GRCh37	1	16260906	16260906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	63	252	0	ENST00000375759.3:c.8171C>T	p.Thr2724Ile	p.T2724I	ENST00000375759	NM_015001.2	2724	aCa/aTa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094435	27094436	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	97	343	0	ENST00000324856.7:c.3145_3146del	p.Leu1049GlyfsTer55	p.L1049Gfs*55	ENST00000324856	NM_006015.4	1048	cCT/c																																																																														
TET1	0	MSKCC	GRCh37	10	70332760	70332760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	66	304	0	ENST00000373644.4:c.665G>A	p.Arg222His	p.R222H	ENST00000373644	NM_030625.2	222	cGc/cAc																																																																														
HRAS	0	MSKCC	GRCh37	11	532724	532724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	118	401	0	ENST00000311189.7:c.482G>A	p.Arg161His	p.R161H	ENST00000311189		161	cGt/cAt																																																																														
HRAS	0	MSKCC	GRCh37	11	533532	533532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	51	460	1	ENST00000311189.7:c.371C>T	p.Thr124Ile	p.T124I	ENST00000311189		124	aCt/aTt																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67200270	67200270	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201348433		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	99	371	0	ENST00000312629.5:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000312629	NM_003952.2	193	cGg/cAg																																																																														
CBL	0	MSKCC	GRCh37	11	119156112	119156112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	83	361	0	ENST00000264033.4:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000264033	NM_005188.3	593	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426543	49426543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	153	431	1	ENST00000301067.7:c.11945G>A	p.Arg3982Gln	p.R3982Q	ENST00000301067	NM_003482.3	3982	cGa/cAa																																																																														
POLE	0	MSKCC	GRCh37	12	133234521	133234521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	69	300	1	ENST00000320574.5:c.3311C>T	p.Thr1104Met	p.T1104M	ENST00000320574	NM_006231.2	1104	aCg/aTg																																																																														
POLE	0	MSKCC	GRCh37	12	133241894	133241894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	77	338	0	ENST00000320574.5:c.2462G>A	p.Arg821His	p.R821H	ENST00000320574	NM_006231.2	821	cGc/cAc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30100025	30100025	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	41	384	0	ENST00000331968.5:c.1595G>A	p.Trp532Ter	p.W532*	ENST00000331968	NM_002742.2	532	tGg/tAg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30135376	30135376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	82	271	0	ENST00000331968.5:c.442G>A	p.Ala148Thr	p.A148T	ENST00000331968	NM_002742.2	148	Gct/Act																																																																														
DICER1	0	MSKCC	GRCh37	14	95570368	95570368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	47	195	0	ENST00000343455.3:c.3365G>A	p.Cys1122Tyr	p.C1122Y	ENST00000343455	NM_177438.2	1122	tGt/tAt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99250880	99250880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	47	286	0	ENST00000268035.6:c.184C>A	p.Leu62Met	p.L62M	ENST00000268035	NM_000875.3	62	Ctg/Atg																																																																														
AXIN1	0	MSKCC	GRCh37	16	348076	348076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	30	419	0	ENST00000262320.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000262320	NM_003502.3	477	cGt/cAt																																																																														
TSC2	0	MSKCC	GRCh37	16	2106730	2106730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	126	396	0	ENST00000219476.3:c.734G>A	p.Arg245His	p.R245H	ENST00000219476	NM_000548.3	245	cGc/cAc																																																																														
MAPK3	0	MSKCC	GRCh37	16	30129423	30129423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	103	352	1	ENST00000263025.4:c.605C>T	p.Thr202Met	p.T202M	ENST00000263025	NM_002746.2	202	aCg/aTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822307	72822307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	52	448	0	ENST00000268489.5:c.9868G>T	p.Ala3290Ser	p.A3290S	ENST00000268489	NM_006885.3	3290	Gcc/Tcc																																																																														
CDK12	0	MSKCC	GRCh37	17	37649131	37649131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	73	277	0	ENST00000447079.4:c.2236G>T	p.Asp746Tyr	p.D746Y	ENST00000447079	NM_015083.1	746	Gac/Tac																																																																														
ERBB2	0	MSKCC	GRCh37	17	37866709	37866710	+	missense_variant	Missense_Mutation	DNP	CG	CG	TA			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	114	380	2	ENST00000269571.5:c.876_877delinsTA	p.Ala293Thr	p.A293T	ENST00000269571		292	ggCGcc/ggTAcc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879801	37879801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	78	254	0	ENST00000269571.5:c.2096C>T	p.Pro699Leu	p.P699L	ENST00000269571		699	cCg/cTg																																																																														
EZH1	0	MSKCC	GRCh37	17	40858194	40858194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	80	390	0	ENST00000428826.2:c.1670G>A	p.Arg557His	p.R557H	ENST00000428826		557	cGt/cAt																																																																														
RNF43	0	MSKCC	GRCh37	17	56439903	56439903	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	167	345	0	ENST00000407977.2:c.687+2T>C		p.X229_splice	ENST00000407977		229																																																																															
AXIN2	0	MSKCC	GRCh37	17	63554231	63554232	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GATGGAATCAATC			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	155	335	0	ENST00000307078.5:c.495_507dup	p.Met170AspfsTer2	p.M170Dfs*2	ENST00000307078	NM_004655.3	169	-/GATTGATTCCATC																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244243	5244243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	74	336	1	ENST00000357368.4:c.1239delC	p.Ser414AlafsTer30	p.S414Afs*30	ENST00000357368	NM_002850.3	413	ccC/cc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10250363	10250363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	80	209	0	ENST00000340748.4:c.3889G>A	p.Gly1297Ser	p.G1297S	ENST00000340748		1297	Ggc/Agc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18272852	18272852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	89	412	0	ENST00000222254.8:c.892G>A	p.Ala298Thr	p.A298T	ENST00000222254	NM_005027.3	298	Gcg/Acg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210913	36210913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	45	381	1	ENST00000222270.7:c.664C>T	p.Arg222Trp	p.R222W	ENST00000222270	NM_014727.1	222	Cgg/Tgg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212307	36212308	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	85	411	0	ENST00000222270.7:c.2061_2062del	p.Pro688SerfsTer2	p.P688Sfs*2	ENST00000222270	NM_014727.1	686	gaCTct/gact																																																																														
MSH2	0	MSKCC	GRCh37	2	47702368	47702369	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATACTTTG			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	73	236	0	ENST00000233146.2:c.1966_1973dup	p.Glu658AspfsTer30	p.E658Dfs*30	ENST00000233146	NM_000251.2	655	gta/gtATACTTTGa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264407	46264407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	100	289	0	ENST00000371998.3:c.1454G>A	p.Arg485His	p.R485H	ENST00000371998		485	cGt/cAt																																																																														
CHEK2	0	MSKCC	GRCh37	22	29092957	29092957	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	86	302	0	ENST00000328354.6:c.1027A>T	p.Ile343Phe	p.I343F	ENST00000328354	NM_007194.3	343	Att/Ttt																																																																														
NF2	0	MSKCC	GRCh37	22	30069366	30069366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	174	400	1	ENST00000338641.4:c.1231C>T	p.Arg411Cys	p.R411C	ENST00000338641	NM_000268.3	411	Cgc/Tgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187628572	187628572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	130	425	0	ENST00000441802.2:c.2410G>A	p.Ala804Thr	p.A804T	ENST00000441802	NM_005245.3	804	Gcg/Acg																																																																														
SDHA	0	MSKCC	GRCh37	5	235329	235329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	61	338	0	ENST00000264932.6:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264932	NM_004168.2	379	Cgc/Tgc																																																																														
STK19	0	MSKCC	GRCh37	6	31948505	31948505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	87	176	0	ENST00000375331.2:c.976C>T	p.Arg326Trp	p.R326W	ENST00000375331	NM_004197.1	326	Cgg/Tgg																																																																														
ESR1	0	MSKCC	GRCh37	6	152129146	152129146	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	94	412	1	ENST00000206249.3:c.103del	p.Leu35TrpfsTer74	p.L35Wfs*74	ENST00000206249	NM_000125.3	33	atC/at																																																																														
SMO	0	MSKCC	GRCh37	7	128845479	128845479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	102	400	0	ENST00000249373.3:c.776C>T	p.Ser259Leu	p.S259L	ENST00000249373	NM_005631.4	259	tCg/tTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162915	38162915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199766344		P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	133	395	0	ENST00000317025.8:c.2291G>A	p.Arg764His	p.R764H	ENST00000317025	NM_023034.1	764	cGt/cAt																																																																														
PREX2	0	MSKCC	GRCh37	8	68864663	68864663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	29	164	0	ENST00000288368.4:c.34G>A	p.Glu12Lys	p.E12K	ENST00000288368	NM_024870.2	12	Gag/Aag																																																																														
PREX2	0	MSKCC	GRCh37	8	68956778	68956778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	41	388	0	ENST00000288368.4:c.896G>A	p.Arg299Gln	p.R299Q	ENST00000288368	NM_024870.2	299	cGg/cAg																																																																														
PREX2	0	MSKCC	GRCh37	8	69028127	69028127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	88	426	0	ENST00000288368.4:c.3286G>A	p.Asp1096Asn	p.D1096N	ENST00000288368	NM_024870.2	1096	Gat/Aat																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737945	145737945	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	36	355	0	ENST00000428558.2:c.2886-1G>T		p.X962_splice	ENST00000428558	NM_004260.3	962																																																																															
BCOR	0	MSKCC	GRCh37	X	39914694	39914694	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	108	358	0	ENST00000378444.4:c.4668del	p.Thr1557ProfsTer11	p.T1557Pfs*11	ENST00000378444	NM_001123385.1	1556	ccC/cc																																																																														
AMER1	0	MSKCC	GRCh37	X	63410971	63410971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	78	382	0	ENST00000330258.3:c.2196G>A	p.Met732Ile	p.M732I	ENST00000330258	NM_152424.3	732	atG/atA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0026680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	96	344	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717733	89717733	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	51	246	0	ENST00000371953.3:c.758T>A	p.Ile253Asn	p.I253N	ENST00000371953	NM_000314.4	253	aTc/aAc																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031883	26031884	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	20	148	0	ENST00000244661.2:c.405_406delAG	p.Arg135SerfsTer12	p.R135Sfs*12	ENST00000244661	NM_003537.3	135	agAGcg/agcg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427614	49427614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	49	296	0	ENST00000301067.7:c.10874C>T	p.Pro3625Leu	p.P3625L	ENST00000301067	NM_003482.3	3625	cCc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7574029	7574029	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	49	335	0	ENST00000269305.4:c.998G>C	p.Arg333Pro	p.R333P	ENST00000269305	NM_001126112.2	333	cGt/cCt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78519487	78519487	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	66	314	0	ENST00000306801.3:c.58G>C	p.Asp20His	p.D20H	ENST00000306801	NM_020761.2	20	Gat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	28	418	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	212	297	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692941	89692941	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	230	325	0	ENST00000371953.3:c.428del	p.Gly143AlafsTer4	p.G143Afs*4	ENST00000371953	NM_000314.4	142	cGg/cg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720822	89720822	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	87	134	0	ENST00000371953.3:c.973del	p.Asp326ThrfsTer18	p.D326Tfs*18	ENST00000371953	NM_000314.4	325	Ctt/tt																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123480583	123480583	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	152	387	0	ENST00000371139.4:c.91del	p.Leu31Ter	p.L31*	ENST00000371139	NM_001114937.2	31	Ctg/tg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	94	568	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	168	717	0	ENST00000171111.5:c.815G>T	p.Arg272Leu	p.R272L	ENST00000171111	NM_203500.1	272	cGc/cTc																																																																														
CDC42	0	MSKCC	GRCh37	1	22417972	22417972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	25	129	0	ENST00000344548.3:c.538C>T	p.Pro180Ser	p.P180S	ENST00000344548	NM_001039802.1	180	Cca/Tca																																																																														
INPPL1	0	MSKCC	GRCh37	11	71945357	71945357	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	186	748	0	ENST00000298229.2:c.2245G>T	p.Glu749Ter	p.E749*	ENST00000298229	NM_001567.3	749	Gag/Tag																																																																														
POLE	0	MSKCC	GRCh37	12	133226469	133226469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	64	393	0	ENST00000320574.5:c.3589A>G	p.Met1197Val	p.M1197V	ENST00000320574	NM_006231.2	1197	Atg/Gtg																																																																														
FLT1	0	MSKCC	GRCh37	13	28919688	28919689	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	55	380	1	ENST00000282397.4:c.2249-1_2249delinsTT		p.X750_splice	ENST00000282397	NM_002019.4	750																																																																															
CREBBP	0	MSKCC	GRCh37	16	3778802	3778802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	98	713	2	ENST00000262367.5:c.6246G>T	p.Gln2082His	p.Q2082H	ENST00000262367	NM_004380.2	2082	caG/caT																																																																														
ERG	0	MSKCC	GRCh37	21	39870295	39870295	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	61	394	0	ENST00000288319.7:c.10A>G	p.Thr4Ala	p.T4A	ENST00000288319	NM_182918.3	4	Act/Gct																																																																														
MITF	0	MSKCC	GRCh37	3	69928394	69928394	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	59	433	0	ENST00000352241.4:c.214G>T	p.Glu72Ter	p.E72*	ENST00000352241	NM_198159.2	72	Gag/Tag																																																																														
ATRX	0	MSKCC	GRCh37	X	76888750	76888750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	68	559	0	ENST00000373344.5:c.5079G>T	p.Arg1693Ser	p.R1693S	ENST00000373344	NM_000489.3	1693	agG/agT																																																																														
ATRX	0	MSKCC	GRCh37	X	76938103	76938106	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	88	624	1	ENST00000373344.5:c.2642_2645del	p.Arg881AsnfsTer23	p.R881Nfs*23	ENST00000373344	NM_000489.3	881	aGAAAa/aa																																																																														
ATM	0	MSKCC	GRCh37	11	108165782	108165783	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	A			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	128	474	0	ENST00000278616.4:c.4905_4906delinsA	p.Gln1636ArgfsTer10	p.Q1636Rfs*10	ENST00000278616	NM_000051.3	1635	tcTCag/tcAag																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533630	63533631	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0026688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	138	646	0	ENST00000307078.5:c.1523_1524delinsT	p.Lys508IlefsTer181	p.K508Ifs*181	ENST00000307078	NM_004655.3	508	aAG/aT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	424	641	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191385	185191385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	141	606	1	ENST00000265026.3:c.2266G>A	p.Asp756Asn	p.D756N	ENST00000265026	NM_004721.4	756	Gac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	675	604	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
EGFR	0	MSKCC	GRCh37	7	55242494	55242494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	641	534	0	ENST00000275493.2:c.2264C>G	p.Ala755Gly	p.A755G	ENST00000275493	NM_005228.3	755	gCc/gGc																																																																														
NSD1	0	MSKCC	GRCh37	5	176666819	176666819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	115	549	0	ENST00000439151.2:c.4255G>C	p.Asp1419His	p.D1419H	ENST00000439151	NM_022455.4	1419	Gac/Cac																																																																														
PTCH1	0	MSKCC	GRCh37	9	98218654	98218654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	108	476	0	ENST00000331920.6:c.3210G>A	p.Met1070Ile	p.M1070I	ENST00000331920	NM_000264.3	1070	atG/atA																																																																														
CUL3	0	MSKCC	GRCh37	2	225378351	225378351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	85	310	0	ENST00000264414.4:c.544G>A	p.Ala182Thr	p.A182T	ENST00000264414	NM_003590.4	182	Gca/Aca																																																																														
IL7R	0	MSKCC	GRCh37	5	35876343	35876343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200570812		P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	217	498	0	ENST00000303115.3:c.1135G>A	p.Ala379Thr	p.A379T	ENST00000303115	NM_002185.3	379	Gcc/Acc																																																																														
MTOR	0	MSKCC	GRCh37	1	11288928	11288928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1481	78	525	0	ENST00000361445.4:c.2827C>G	p.Leu943Val	p.L943V	ENST00000361445	NM_004958.3	943	Ctg/Gtg																																																																														
BCL10	0	MSKCC	GRCh37	1	85736388	85736388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	186	437	0	ENST00000370580.1:c.259C>T	p.Arg87Trp	p.R87W	ENST00000370580	NM_003921.4	87	Cgg/Tgg																																																																														
INSR	0	MSKCC	GRCh37	19	7117297	7117297	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145697152		P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	59	695	1	ENST00000302850.5:c.3919G>A	p.Glu1307Lys	p.E1307K	ENST00000302850	NM_000208.2	1307	Gag/Aag																																																																														
DNMT1	0	MSKCC	GRCh37	19	10260290	10260290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	66	584	0	ENST00000340748.4:c.2377C>G	p.His793Asp	p.H793D	ENST00000340748		793	Cac/Gac																																																																														
AKT2	0	MSKCC	GRCh37	19	40762872	40762872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	87	661	0	ENST00000392038.2:c.136G>C	p.Asp46His	p.D46H	ENST00000392038	NM_001626.4	46	Gat/Cat																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0026691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	200	550	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	0	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0026691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	267	629	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																														
PALB2	0	MSKCC	GRCh37	16	23646376	23646377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	290	505	0	ENST00000261584.4:c.1490dup	p.Asn497LysfsTer2	p.N497Kfs*2	ENST00000261584	NM_024675.3	497	aat/aaAt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59853800	59853800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	248	537	0	ENST00000259008.2:c.2059G>C	p.Val687Leu	p.V687L	ENST00000259008	NM_032043.2	687	Gtg/Ctg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350927	89350927	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1334	83	944	0	ENST00000301030.4:c.2023G>C	p.Glu675Gln	p.E675Q	ENST00000301030	NM_001256183.1	675	Gag/Cag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170519	11170519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	76	699	0	ENST00000344626.4:c.4726G>A	p.Glu1576Lys	p.E1576K	ENST00000344626	NM_003072.3	1576	Gag/Aag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170531	11170531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	72	701	0	ENST00000344626.4:c.4738G>A	p.Glu1580Lys	p.E1580K	ENST00000344626	NM_003072.3	1580	Gag/Aag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170528	11170528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	70	705	1	ENST00000344626.4:c.4735G>A	p.Glu1579Lys	p.E1579K	ENST00000344626	NM_003072.3	1579	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0026694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	322	625	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	219	637	2	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc																																																																														
DDR2	0	MSKCC	GRCh37	1	162746132	162746132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	246	389	0	ENST00000367921.3:c.2255G>A	p.Arg752His	p.R752H	ENST00000367921	NM_006182.2	752	cGc/cAc																																																																														
RET	0	MSKCC	GRCh37	10	43600427	43600427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	155	553	4	ENST00000355710.3:c.653C>T	p.Pro218Leu	p.P218L	ENST00000355710	NM_020975.4	218	cCg/cTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0026695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	431	651	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0026695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	411	410	1	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	26	373	1				ENST00000310581	NM_198253.2																																																																																
AR	0	MSKCC	GRCh37	X	66766196	66766196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	32	410	0	ENST00000374690.3:c.1208C>T	p.Ala403Val	p.A403V	ENST00000374690	NM_000044.3	403	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	49	480	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43714227	43714227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	51	753	2	ENST00000382044.4:c.3926C>T	p.Ser1309Phe	p.S1309F	ENST00000382044	NM_001141980.1	1309	tCc/tTc																																																																														
B2M	0	MSKCC	GRCh37	15	45003775	45003775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	36	425	0	ENST00000558401.1:c.31G>C	p.Ala11Pro	p.A11P	ENST00000558401	NM_004048.2	11	Gcg/Ccg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420309	88420309	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	38	516	1	ENST00000360948.2:c.2377C>T	p.Arg793Ter	p.R793*	ENST00000360948	NM_001012338.2	793	Cga/Tga																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89341349	89341349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	70	474	0	ENST00000301030.4:c.7586C>T	p.Ser2529Phe	p.S2529F	ENST00000301030	NM_001256183.1	2529	tCc/tTc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5211611	5211611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	33	389	0	ENST00000357368.4:c.5224G>C	p.Asp1742His	p.D1742H	ENST00000357368	NM_002850.3	1742	Gat/Cat																																																																														
KMT2B	0	MSKCC	GRCh37	19	36215574	36215574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	97	748	3	ENST00000222270.7:c.3371C>T	p.Pro1124Leu	p.P1124L	ENST00000222270	NM_014727.1	1124	cCc/cTc																																																																														
CIC	0	MSKCC	GRCh37	19	42796325	42796325	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	83	749	1	ENST00000575354.2:c.2974C>T	p.Gln992Ter	p.Q992*	ENST00000575354	NM_015125.3	992	Cag/Tag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528617	89528617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	44	379	0	ENST00000336596.2:c.2917G>A	p.Glu973Lys	p.E973K	ENST00000336596	NM_005233.5	973	Gaa/Aaa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396221	139396222	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0026697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	71	674	1	ENST00000277541.6:c.5616_5617delinsTT	p.Met1872_Asp1873delinsIleTyr	p.M1872_D1873delinsIY	ENST00000277541	NM_017617.3	1872	atGGac/atTTac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	614	546	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18699324	18699324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	609	474	1	ENST00000266497.5:c.3425G>A	p.Arg1142His	p.R1142H	ENST00000266497		1142	cGt/cAt																																																																														
CDK8	0	MSKCC	GRCh37	13	26959432	26959432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	319	544	0	ENST00000381527.3:c.599G>A	p.Arg200Gln	p.R200Q	ENST00000381527	NM_001260.1	200	cGa/cAa																																																																														
APC	0	MSKCC	GRCh37	5	112175411	112175412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	202	341	0	ENST00000257430.4:c.4122dup	p.His1375ThrfsTer11	p.H1375Tfs*11	ENST00000257430	NM_000038.5	1374	gaa/gAaa																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165852	118165852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	308	470	0	ENST00000369448.3:c.362C>T	p.Pro121Leu	p.P121L	ENST00000369448	NM_017709.3	121	cCa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	211	585	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GLI1	0	MSKCC	GRCh37	12	57858503	57858503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	239	709	1	ENST00000228682.2:c.241C>T	p.Arg81Trp	p.R81W	ENST00000228682	NM_005269.2	81	Cgg/Tgg																																																																														
RB1	0	MSKCC	GRCh37	13	48953728	48953728	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	222	315	0	ENST00000267163.4:c.1333-2A>G		p.X445_splice	ENST00000267163	NM_000321.2	445																																																																															
STK11	0	MSKCC	GRCh37	19	1220706	1220706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	370	596	0	ENST00000326873.7:c.724G>T	p.Gly242Trp	p.G242W	ENST00000326873	NM_000455.4	242	Ggg/Tgg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602618	10602621	+	frameshift_variant	Frame_Shift_Del	DEL	CCGG	CCGG	-			P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	378	645	0	ENST00000171111.5:c.957_960del	p.Cys319TrpfsTer8	p.C319Wfs*8	ENST00000171111	NM_203500.1	319	tgCCGG/tg																																																																														
XPO1	0	MSKCC	GRCh37	2	61722714	61722714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	134	498	0	ENST00000401558.2:c.923A>G	p.Tyr308Cys	p.Y308C	ENST00000401558	NM_003400.3	308	tAc/tGc																																																																														
RBM10	0	MSKCC	GRCh37	X	47041582	47041582	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	190	399	3	ENST00000329236.7:c.1573C>T	p.Gln525Ter	p.Q525*	ENST00000329236	NM_001204466.1	525	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	154	480	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SOX17	0	MSKCC	GRCh37	8	55371005	55371005	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	79	598	2	ENST00000297316.4:c.307G>T	p.Gly103Cys	p.G103C	ENST00000297316	NM_022454.3	103	Ggc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	266	703	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
KDM5A	0	MSKCC	GRCh37	12	416218	416218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	141	470	0	ENST00000399788.2:c.3968G>T	p.Arg1323Leu	p.R1323L	ENST00000399788	NM_001042603.1	1323	cGg/cTg																																																																														
PARK2	0	MSKCC	GRCh37	6	162683689	162683689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	95	502	0	ENST00000366898.1:c.280G>T	p.Gly94Cys	p.G94C	ENST00000366898	NM_004562.2	94	Ggc/Tgc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71949100	71949100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	76	493	1	ENST00000298229.2:c.3567G>T	p.Gln1189His	p.Q1189H	ENST00000298229	NM_001567.3	1189	caG/caT																																																																														
DDR2	0	MSKCC	GRCh37	1	162729734	162729734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	84	507	0	ENST00000367921.3:c.820G>A	p.Glu274Lys	p.E274K	ENST00000367921	NM_006182.2	274	Gaa/Aaa																																																																														
ARID2	0	MSKCC	GRCh37	12	46246515	46246515	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	71	266	0	ENST00000334344.6:c.4609A>T	p.Arg1537Ter	p.R1537*	ENST00000334344	NM_152641.2	1537	Aga/Tga																																																																														
GLI1	0	MSKCC	GRCh37	12	57865671	57865671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	202	727	1	ENST00000228682.2:c.3148G>A	p.Val1050Met	p.V1050M	ENST00000228682	NM_005269.2	1050	Gtg/Atg																																																																														
DICER1	0	MSKCC	GRCh37	14	95557423	95557423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	59	420	0	ENST00000343455.3:c.5551C>T	p.Arg1851Cys	p.R1851C	ENST00000343455	NM_177438.2	1851	Cgt/Tgt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43784635	43784635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	79	571	0	ENST00000382044.4:c.39G>T	p.Leu13Phe	p.L13F	ENST00000382044	NM_001141980.1	13	ttG/ttT																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66774218	66774218	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	67	749	0	ENST00000307102.5:c.693+1G>A		p.X231_splice	ENST00000307102	NM_002755.3	231																																																																															
NTRK3	0	MSKCC	GRCh37	15	88476307	88476307	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	84	668	0	ENST00000360948.2:c.1825G>C	p.Asp609His	p.D609H	ENST00000360948	NM_001012338.2	609	Gat/Cat																																																																														
DOT1L	0	MSKCC	GRCh37	19	2191155	2191155	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	140	705	0	ENST00000398665.3:c.412del	p.Glu138ArgfsTer10	p.E138Rfs*10	ENST00000398665	NM_032482.2	137	Ggg/gg																																																																														
CTLA4	0	MSKCC	GRCh37	2	204735452	204735452	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	35	387	0	ENST00000302823.3:c.253T>G	p.Cys85Gly	p.C85G	ENST00000302823	NM_005214.4	85	Tgt/Ggt																																																																														
CUL3	0	MSKCC	GRCh37	2	225400313	225400313	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	25	302	0	ENST00000264414.4:c.310A>T	p.Thr104Ser	p.T104S	ENST00000264414	NM_003590.4	104	Acg/Tcg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561052	9561052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	51	276	1	ENST00000353224.5:c.730G>T	p.Gly244Trp	p.G244W	ENST00000353224	NM_177990.2	244	Ggg/Tgg																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45651274	45651274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201791685		P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	105	582	1	ENST00000407780.3:c.751G>A	p.Glu251Lys	p.E251K	ENST00000407780	NM_001283052.1	251	Gag/Aag																																																																														
GATA2	0	MSKCC	GRCh37	3	128204743	128204743	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	53	773	0	ENST00000341105.2:c.698T>A	p.Leu233Gln	p.L233Q	ENST00000341105	NM_032638.4	233	cTa/cAa																																																																														
HGF	0	MSKCC	GRCh37	7	81374339	81374339	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	38	357	0	ENST00000222390.5:c.723C>G	p.His241Gln	p.H241Q	ENST00000222390	NM_000601.4	241	caC/caG																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509396	106509396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	72	506	0	ENST00000359195.3:c.1390G>T	p.Val464Leu	p.V464L	ENST00000359195	NM_002649.2	464	Gtg/Ttg																																																																														
PREX2	0	MSKCC	GRCh37	8	68934319	68934319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	76	697	1	ENST00000288368.4:c.385G>T	p.Ala129Ser	p.A129S	ENST00000288368	NM_024870.2	129	Gca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	265	473	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1250	196	656	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	192	499	2	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	105	546	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT																																																																														
MGA	0	MSKCC	GRCh37	15	42052633	42052633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1378	108	785	1	ENST00000219905.7:c.7304G>A	p.Arg2435Gln	p.R2435Q	ENST00000219905	NM_001164273.1	2435	cGg/cAg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10273958	10273958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	154	621	1	ENST00000330684.3:c.311C>T	p.Thr104Met	p.T104M	ENST00000330684	NM_001134407.1	104	aCg/aTg																																																																														
GNAS	0	MSKCC	GRCh37	20	57484772	57484772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	274	511	0	ENST00000371085.3:c.752G>A	p.Ser251Asn	p.S251N	ENST00000371085	NM_000516.4	251	aGc/aAc																																																																														
AMER1	0	MSKCC	GRCh37	X	63411005	63411005	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	64	655	0	ENST00000330258.3:c.2162T>G	p.Leu721Arg	p.L721R	ENST00000330258	NM_152424.3	721	cTc/cGc																																																																														
APC	0	MSKCC	GRCh37	5	112173912	112173913	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	184	349	0	ENST00000257430.4:c.2624dup	p.Arg876AlafsTer36	p.R876Afs*36	ENST00000257430	NM_000038.5	874	tca/tcAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578276	7578312	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATC	AGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATC	-			P-0024217-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			844	91	626	1	ENST00000269305.4:c.560-23_573del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
AKT2	0	MSKCC	GRCh37	19	40762871	40762871	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024217-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			794	216	592	0	ENST00000392038.2:c.137A>T	p.Asp46Val	p.D46V	ENST00000392038	NM_001626.4	46	gAt/gTt																																																																														
TET2	0	MSKCC	GRCh37	4	106157335	106157336	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024217-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	163	384	0	ENST00000380013.4:c.2241dup	p.Leu748IlefsTer6	p.L748Ifs*6	ENST00000380013	NM_001127208.2	746	caa/cAaa																																																																														
VHL	0	MSKCC	GRCh37	3	10183764	10183764	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs5030804		P-0026483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	294	676	0	ENST00000256474.2:c.233A>G	p.Asn78Ser	p.N78S	ENST00000256474	NM_000551.3	78	aAt/aGt																																																																														
MTOR	0	MSKCC	GRCh37	1	11177096	11177096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	84	555	0	ENST00000361445.4:c.6981G>C	p.Met2327Ile	p.M2327I	ENST00000361445	NM_004958.3	2327	atG/atC																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643921	52643921	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	84	393	0	ENST00000394830.3:c.1975C>T	p.Gln659Ter	p.Q659*	ENST00000394830	NM_018313.4	659	Cag/Tag																																																																														
FAT1	0	MSKCC	GRCh37	4	187542155	187542155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	86	394	0	ENST00000441802.2:c.5585C>A	p.Ala1862Glu	p.A1862E	ENST00000441802	NM_005245.3	1862	gCa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	255	684	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	102	611	5	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916706	178916706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	25	380	0	ENST00000263967.3:c.93A>G	p.Ile31Met	p.I31M	ENST00000263967	NM_006218.2	31	atA/atG																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	122	420	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739374	145739374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	153	733	3	ENST00000428558.2:c.1996G>A	p.Gly666Arg	p.G666R	ENST00000428558	NM_004260.3	666	Ggg/Agg																																																																														
TSC1	0	MSKCC	GRCh37	9	135771827	135771827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	126	710	2	ENST00000298552.3:c.3290G>A	p.Arg1097His	p.R1097H	ENST00000298552	NM_001162426.1	1097	cGt/cAt																																																																														
MTOR	0	MSKCC	GRCh37	1	11181367	11181367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	117	652	0	ENST00000361445.4:c.6869C>T	p.Ala2290Val	p.A2290V	ENST00000361445	NM_004958.3	2290	gCc/gTc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798993	45798993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	183	688	0	ENST00000372115.3:c.310G>A	p.Glu104Lys	p.E104K	ENST00000372115	NM_001048171.1	104	Gaa/Aaa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120479979	120479979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	123	676	0	ENST00000256646.2:c.3448C>T	p.Leu1150Phe	p.L1150F	ENST00000256646	NM_024408.3	1150	Ctc/Ttc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041927	14041927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	74	320	1	ENST00000311895.7:c.2474C>T	p.Ala825Val	p.A825V	ENST00000311895	NM_005236.2	825	gCg/gTg																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7983221	7983221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	105	598	0	ENST00000319144.4:c.793G>C	p.Gly265Arg	p.G265R	ENST00000319144	NM_001139.2	265	Ggg/Cgg																																																																														
CDK12	0	MSKCC	GRCh37	17	37619253	37619253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1999	188	382	0	ENST00000447079.4:c.929C>T	p.Ser310Leu	p.S310L	ENST00000447079	NM_015083.1	310	tCg/tTg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222272	2222272	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	297	785	0	ENST00000398665.3:c.3104C>G	p.Ser1035Ter	p.S1035*	ENST00000398665	NM_032482.2	1035	tCa/tGa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11094975	11094975	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	125	746	0	ENST00000344626.4:c.148C>G	p.Pro50Ala	p.P50A	ENST00000344626	NM_003072.3	50	Ccc/Gcc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170431	11170431	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	177	545	0	ENST00000344626.4:c.4638C>G	p.Ile1546Met	p.I1546M	ENST00000344626	NM_003072.3	1546	atC/atG																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18266796	18266796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	86	619	0	ENST00000222254.8:c.107C>T	p.Ala36Val	p.A36V	ENST00000222254	NM_005027.3	36	gCg/gTg																																																																														
SOS1	0	MSKCC	GRCh37	2	39294835	39294835	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	34	471	0	ENST00000402219.2:c.147A>C	p.Glu49Asp	p.E49D	ENST00000402219	NM_005633.3	49	gaA/gaC																																																																														
SOS1	0	MSKCC	GRCh37	2	39294861	39294861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	26	477	1	ENST00000402219.2:c.121A>G	p.Asn41Asp	p.N41D	ENST00000402219	NM_005633.3	41	Aat/Gat																																																																														
SOS1	0	MSKCC	GRCh37	2	39294866	39294871	+	frameshift_variant	Frame_Shift_Del	DEL	TCGAGA	TCGAGA	ACGAG			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	27	471	2	ENST00000402219.2:c.111_116delinsCTCGT	p.Leu38SerfsTer14	p.L38Sfs*14	ENST00000402219	NM_005633.3	37	acTCTCGAg/acCTCGTg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46268749	46268749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	199	638	0	ENST00000371998.3:c.3034G>A	p.Asp1012Asn	p.D1012N	ENST00000371998		1012	Gat/Aat																																																																														
MLH1	0	MSKCC	GRCh37	3	37091976	37091976	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	142	351	0	ENST00000231790.2:c.2104-1G>A		p.X702_splice	ENST00000231790	NM_000249.3	702																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178916948	178916948	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	40	356	0	ENST00000263967.3:c.335T>C	p.Ile112Thr	p.I112T	ENST00000263967	NM_006218.2	112	aTc/aCc																																																																														
FLT4	0	MSKCC	GRCh37	5	180040054	180040054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	169	804	2	ENST00000261937.6:c.3388G>T	p.Asp1130Tyr	p.D1130Y	ENST00000261937	NM_182925.4	1130	Gac/Tac																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056551	26056551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	34	222	0	ENST00000343677.2:c.106T>C	p.Ser36Pro	p.S36P	ENST00000343677	NM_005319.3	36	Tct/Cct																																																																														
PARK2	0	MSKCC	GRCh37	6	162864407	162864407	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	107	592	4	ENST00000366898.1:c.106del	p.Val36PhefsTer8	p.V36Ffs*8	ENST00000366898	NM_004562.2	36	Gtt/tt																																																																														
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	204	679	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	756	668	0	ENST00000269305.4:c.517del	p.Val173Ter	p.V173*	ENST00000269305	NM_001126112.2	173	Gtg/tg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	575	520	1	ENST00000322088.6:c.536C>T	p.Pro179Leu	p.P179L	ENST00000322088	NM_014225.5	179	cCc/cTc																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46511619	46511619	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	36	551	0	ENST00000262741.5:c.1158C>G	p.Ser386Arg	p.S386R	ENST00000262741	NM_003629.3	386	agC/agG																																																																														
ERCC5	0	MSKCC	GRCh37	13	103519036	103519036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	88	487	0	ENST00000355739.4:c.2374G>C	p.Ala792Pro	p.A792P	ENST00000355739	NM_000123.3	792	Gcg/Ccg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426910	49426910	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	226	524	0	ENST00000301067.7:c.11578C>T	p.Gln3860Ter	p.Q3860*	ENST00000301067	NM_003482.3	3860	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	174	500	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0026487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	162	562	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098954	178098954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	91	240	0	ENST00000397062.3:c.91G>A	p.Gly31Arg	p.G31R	ENST00000397062	NM_006164.4	31	Gga/Aga																																																																														
STK11	0	MSKCC	GRCh37	19	1226467	1226469	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0026487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	59	826	0	ENST00000326873.7:c.1127_1129del	p.Glu376del	p.E376del	ENST00000326873	NM_000455.4	375	GAG/-																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591135	67591143	+	inframe_deletion	In_Frame_Del	DEL	GAGAGACCA	GAGAGACCA	-			P-0026487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	14	335	0	ENST00000274335.5:c.1728_1736del	p.Arg577_Gln579del	p.R577_Q579del	ENST00000274335		576	acGAGAGACCAa/aca																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591259	67591303	+	inframe_deletion	In_Frame_Del	DEL	AAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATG	AAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATG	-			P-0026487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	18	397	0	ENST00000274335.5:c.1761_1805del	p.Lys587_Glu601del	p.K587_E601del	ENST00000274335		586	cAAAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATGaa/caa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	365	414	1	ENST00000397062.3:c.101G>T	p.Arg34Leu	p.R34L	ENST00000397062	NM_006164.4	34	cGa/cTa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356248	66356248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202046693		P-0026491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	149	787	2	ENST00000273854.3:c.1249C>T	p.Arg417Trp	p.R417W	ENST00000273854	NM_004439.5	417	Cgg/Tgg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31429602	31429602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	81	866	1	ENST00000344624.3:c.3196C>T	p.Arg1066Cys	p.R1066C	ENST00000344624		1066	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577555	7577568	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGGAACTGTTAC	GCAGGAACTGTTAC	-			P-0026491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	389	888	2	ENST00000269305.4:c.713_726del	p.Cys238TyrfsTer21	p.C238Yfs*21	ENST00000269305	NM_001126112.2	238	tGTAACAGTTCCTGC/t																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056094	26056094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	107	545	0	ENST00000343677.2:c.563G>C	p.Ser188Thr	p.S188T	ENST00000343677	NM_005319.3	188	aGt/aCt																																																																														
CDK12	0	MSKCC	GRCh37	17	37657656	37657656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	345	525	1	ENST00000447079.4:c.2573G>A	p.Arg858Gln	p.R858Q	ENST00000447079	NM_015083.1	858	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577081	7577082	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	659	753	0	ENST00000269305.4:c.856dup	p.Glu286GlyfsTer20	p.E286Gfs*20	ENST00000269305	NM_001126112.2	286	gaa/gGaa																																																																														
SUZ12	0	MSKCC	GRCh37	17	30320308	30320308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	173	401	0	ENST00000322652.5:c.1249G>A	p.Asp417Asn	p.D417N	ENST00000322652	NM_015355.2	417	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	579	677	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430559	78430559	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	196	401	0	ENST00000370768.2:c.731T>G	p.Val244Gly	p.V244G	ENST00000370768	NM_003902.3	244	gTt/gGt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223634	36223634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	320	911	1	ENST00000222270.7:c.6184G>A	p.Asp2062Asn	p.D2062N	ENST00000222270	NM_014727.1	2062	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	407	972	0	ENST00000269305.4:c.464C>A	p.Thr155Asn	p.T155N	ENST00000269305	NM_001126112.2	155	aCc/aAc																																																																														
SUFU	0	MSKCC	GRCh37	10	104352349	104352349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	22	527	0	ENST00000369902.3:c.465C>G	p.Phe155Leu	p.F155L	ENST00000369902	NM_016169.3	155	ttC/ttG																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245615	41245615	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	357	659	1	ENST00000357654.3:c.1933del	p.Ser645LeufsTer6	p.S645Lfs*6	ENST00000357654	NM_007294.3	645	Tct/ct																																																																														
ATRX	0	MSKCC	GRCh37	X	76939271	76939271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	82	768	1	ENST00000373344.5:c.1477C>T	p.His493Tyr	p.H493Y	ENST00000373344	NM_000489.3	493	Cat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	180	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	273	640	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
APC	0	MSKCC	GRCh37	5	112176063	112176064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	64	399	0	ENST00000257430.4:c.4778dupA	p.Pro1594AlafsTer38	p.P1594Afs*38	ENST00000257430	NM_000038.5	1591	gca/gcAa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30103628	30103628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	67	585	0	ENST00000331968.5:c.1310C>T	p.Thr437Met	p.T437M	ENST00000331968	NM_002742.2	437	aCg/aTg																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612867	228612867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	70	590	0	ENST00000366696.1:c.160C>T	p.Arg54Cys	p.R54C	ENST00000366696	NM_003493.2	54	Cgc/Tgc																																																																														
RET	0	MSKCC	GRCh37	10	43600591	43600591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	73	603	0	ENST00000355710.3:c.817C>G	p.Pro273Ala	p.P273A	ENST00000355710	NM_020975.4	273	Ccc/Gcc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741678	17741678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	113	538	2	ENST00000250003.3:c.349C>T	p.Arg117Cys	p.R117C	ENST00000250003	NM_002478.4	117	Cgc/Tgc																																																																														
APC	0	MSKCC	GRCh37	5	112111413	112111414	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	68	338	0	ENST00000257430.4:c.511dup	p.Ser171LysfsTer6	p.S171Kfs*6	ENST00000257430	NM_000038.5	170	-/A																																																																														
FLT4	0	MSKCC	GRCh37	5	180030335	180030335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	54	747	1	ENST00000261937.6:c.3949G>T	p.Gly1317Trp	p.G1317W	ENST00000261937	NM_182925.4	1317	Ggg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	168	455	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
DDR2	0	MSKCC	GRCh37	1	162746132	162746132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	43	223	0	ENST00000367921.3:c.2255G>A	p.Arg752His	p.R752H	ENST00000367921	NM_006182.2	752	cGc/cAc																																																																														
NUP93	0	MSKCC	GRCh37	16	56865888	56865888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	70	317	1	ENST00000308159.5:c.1220C>T	p.Ala407Val	p.A407V	ENST00000308159	NM_014669.4	407	gCg/gTg																																																																														
TCF3	0	MSKCC	GRCh37	19	1621011	1621011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1310	208	759	0	ENST00000344749.5:c.1049C>T	p.Ser350Leu	p.S350L	ENST00000344749	NM_001136139.2	350	tCg/tTg																																																																														
IRS1	0	MSKCC	GRCh37	2	227662856	227662856	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	122	546	0	ENST00000305123.5:c.599A>C	p.Glu200Ala	p.E200A	ENST00000305123	NM_005544.2	200	gAg/gCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	563	398	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	32	262	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	137	545	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	136	560	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	678	565	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	308	527	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031885	26031885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	39	188	0	ENST00000244661.2:c.404G>C	p.Arg135Thr	p.R135T	ENST00000244661	NM_003537.3	135	aGa/aCa																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915952	127915952	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	77	382	0	ENST00000373547.4:c.529C>T	p.Arg177Ter	p.R177*	ENST00000373547	NM_002721.4	177	Cga/Tga																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651906	36651906	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	104	430	0	ENST00000244741.5:c.28C>T	p.Gln10Ter	p.Q10*	ENST00000244741	NM_000389.4	10	Cag/Tag																																																																														
GLI1	0	MSKCC	GRCh37	12	57860053	57860053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200444628		P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	78	604	1	ENST00000228682.2:c.793C>T	p.Arg265Trp	p.R265W	ENST00000228682	NM_005269.2	265	Cgg/Tgg																																																																														
STAG2	0	MSKCC	GRCh37	X	123184055	123184055	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	23	173	0	ENST00000218089.9:c.913C>T	p.Arg305Ter	p.R305*	ENST00000218089	NM_001042749.1	305	Cga/Tga																																																																														
ERCC2	0	MSKCC	GRCh37	19	45856356	45856356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	519	663	0	ENST00000391945.4:c.1816G>A	p.Glu606Lys	p.E606K	ENST00000391945	NM_000400.3	606	Gag/Aag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902622	1902622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	67	515	0	ENST00000382891.5:c.241G>T	p.Asp81Tyr	p.D81Y	ENST00000382891	NM_133335.3	81	Gat/Tat																																																																														
MTOR	0	MSKCC	GRCh37	1	11199408	11199408	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	72	431	0	ENST00000361445.4:c.5083C>G	p.Gln1695Glu	p.Q1695E	ENST00000361445	NM_004958.3	1695	Cag/Gag																																																																														
SPEN	0	MSKCC	GRCh37	1	16255328	16255328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	103	521	0	ENST00000375759.3:c.2593G>A	p.Glu865Lys	p.E865K	ENST00000375759	NM_015001.2	865	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106700	27106700	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	131	448	1	ENST00000324856.7:c.6312del	p.Thr2105ProfsTer30	p.T2105Pfs*30	ENST00000324856	NM_006015.4	2104	tCc/tc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45796910	45796910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	237	477	0	ENST00000372115.3:c.1378C>G	p.Arg460Gly	p.R460G	ENST00000372115	NM_001048171.1	460	Cgc/Ggc																																																																														
JUN	0	MSKCC	GRCh37	1	59248679	59248679	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1580	252	696	2	ENST00000371222.2:c.64G>T	p.Glu22Ter	p.E22*	ENST00000371222	NM_002228.3	22	Gag/Tag																																																																														
CSDE1	0	MSKCC	GRCh37	1	115263326	115263326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	66	519	0	ENST00000438362.2:c.2024G>A	p.Gly675Asp	p.G675D	ENST00000438362	NM_001242891.1	675	gGt/gAt																																																																														
HRAS	0	MSKCC	GRCh37	11	533539	533539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	57	675	0	ENST00000311189.7:c.364G>T	p.Ala122Ser	p.A122S	ENST00000311189		122	Gca/Tca																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64126723	64126723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	89	450	0	ENST00000334205.4:c.16G>A	p.Asp6Asn	p.D6N	ENST00000334205	NM_003942.2	6	Gac/Aac																																																																														
DIS3	0	MSKCC	GRCh37	13	73335792	73335792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	87	218	0	ENST00000377767.4:c.2503C>T	p.His835Tyr	p.H835Y	ENST00000377767	NM_014953.3	835	Cat/Tat																																																																														
DICER1	0	MSKCC	GRCh37	14	95584011	95584011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	36	364	1	ENST00000343455.3:c.1457A>G	p.Lys486Arg	p.K486R	ENST00000343455	NM_177438.2	486	aAg/aGg																																																																														
MGA	0	MSKCC	GRCh37	15	42005564	42005564	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	64	462	0	ENST00000219905.7:c.3300G>C	p.Gln1100His	p.Q1100H	ENST00000219905	NM_001164273.1	1100	caG/caC																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727414	66727414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	48	320	0	ENST00000307102.5:c.130G>C	p.Glu44Gln	p.E44Q	ENST00000307102	NM_002755.3	44	Gag/Cag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3843501	3843501	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	123	433	0	ENST00000262367.5:c.1102C>T	p.Gln368Ter	p.Q368*	ENST00000262367	NM_004380.2	368	Cag/Tag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347299	89347299	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	123	552	0	ENST00000301030.4:c.5651C>G	p.Ser1884Ter	p.S1884*	ENST00000301030	NM_001256183.1	1884	tCa/tGa																																																																														
FANCA	0	MSKCC	GRCh37	16	89877180	89877180	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	129	501	0	ENST00000389301.3:c.457C>G	p.Gln153Glu	p.Q153E	ENST00000389301	NM_000135.2	153	Cag/Gag																																																																														
TP53	0	MSKCC	GRCh37	17	7577069	7577069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	72	548	1	ENST00000269305.4:c.869G>T	p.Arg290Leu	p.R290L	ENST00000269305	NM_001126112.2	290	cGc/cTc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37883195	37883195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	325	546	1	ENST00000269571.5:c.3098C>T	p.Pro1033Leu	p.P1033L	ENST00000269571		1033	cCa/cTa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2191113	2191113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	90	549	2	ENST00000398665.3:c.367G>A	p.Glu123Lys	p.E123K	ENST00000398665	NM_032482.2	123	Gag/Aag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36219748	36219748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1335	98	714	0	ENST00000222270.7:c.4645G>A	p.Glu1549Lys	p.E1549K	ENST00000222270	NM_014727.1	1549	Gag/Aag																																																																														
SETD2	0	MSKCC	GRCh37	3	47161816	47161816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	38	324	0	ENST00000409792.3:c.4310C>T	p.Ser1437Leu	p.S1437L	ENST00000409792	NM_014159.6	1437	tCa/tTa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52598140	52598140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	70	471	0	ENST00000394830.3:c.3726G>C	p.Gln1242His	p.Q1242H	ENST00000394830	NM_018313.4	1242	caG/caC																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185155267	185155267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	138	370	0	ENST00000265026.3:c.508G>A	p.Glu170Lys	p.E170K	ENST00000265026	NM_004721.4	170	Gag/Aag																																																																														
FAM175A	0	MSKCC	GRCh37	4	84383798	84383798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	114	415	0	ENST00000321945.7:c.1054G>C	p.Asp352His	p.D352H	ENST00000321945	NM_139076.2	352	Gat/Cat																																																																														
NSD1	0	MSKCC	GRCh37	5	176562169	176562169	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	50	518	0	ENST00000439151.2:c.65T>G	p.Leu22Ter	p.L22*	ENST00000439151	NM_022455.4	22	tTa/tGa																																																																														
NSD1	0	MSKCC	GRCh37	5	176684035	176684035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	85	615	0	ENST00000439151.2:c.4849G>A	p.Glu1617Lys	p.E1617K	ENST00000439151	NM_022455.4	1617	Gaa/Aaa																																																																														
BRAF	0	MSKCC	GRCh37	7	140439667	140439667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	34	296	0	ENST00000288602.6:c.2072G>C	p.Arg691Thr	p.R691T	ENST00000288602	NM_004333.4	691	aGa/aCa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38186967	38186967	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	52	602	0	ENST00000317025.8:c.1510G>C	p.Glu504Gln	p.E504Q	ENST00000317025	NM_023034.1	504	Gaa/Caa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187067	38187067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	45	547	0	ENST00000317025.8:c.1410G>C	p.Trp470Cys	p.W470C	ENST00000317025	NM_023034.1	470	tgG/tgC																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187096	38187096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	54	546	0	ENST00000317025.8:c.1381G>A	p.Glu461Lys	p.E461K	ENST00000317025	NM_023034.1	461	Gaa/Aaa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187349	38187349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	31	403	0	ENST00000317025.8:c.1128G>C	p.Glu376Asp	p.E376D	ENST00000317025	NM_023034.1	376	gaG/gaC																																																																														
PPP6C	0	MSKCC	GRCh37	9	127916204	127916241	+	frameshift_variant	Frame_Shift_Del	DEL	TCAAAAACTTTGGTACAGTATCTCCAGGCATTAGCATT	TCAAAAACTTTGGTACAGTATCTCCAGGCATTAGCATT	-			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	35	391	0	ENST00000373547.4:c.403_440del	p.Asn135HisfsTer10	p.N135Hfs*10	ENST00000373547	NM_002721.4	135	AATGCTAATGCCTGGAGATACTGTACCAAAGTTTTTGAc/c																																																																														
BCOR	0	MSKCC	GRCh37	X	39911475	39911475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	71	266	0	ENST00000378444.4:c.5155G>C	p.Glu1719Gln	p.E1719Q	ENST00000378444	NM_001123385.1	1719	Gaa/Caa																																																																														
RBM10	0	MSKCC	GRCh37	X	47038717	47038717	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0026526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	60	256	0	ENST00000329236.7:c.494-1G>C		p.X165_splice	ENST00000329236	NM_001204466.1	165																																																																															
PTEN	0	MSKCC	GRCh37	10	89692899	89692899	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	162	391	0	ENST00000371953.3:c.383A>C	p.Lys128Thr	p.K128T	ENST00000371953	NM_000314.4	128	aAg/aCg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180526	94180526	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	77	351	1	ENST00000323929.3:c.1642A>T	p.Ile548Leu	p.I548L	ENST00000323929	NM_005591.3	548	Ata/Tta																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344053	118344055	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0026527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	132	299	1	ENST00000534358.1:c.2184_2186del	p.Ser729del	p.S729del	ENST00000534358	NM_005933.3	727	TCT/-																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445040	49445040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	616	458	1	ENST00000301067.7:c.2426A>T	p.Gln809Leu	p.Q809L	ENST00000301067	NM_003482.3	809	cAg/cTg																																																																														
TSHR	0	MSKCC	GRCh37	14	81606091	81606091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	279	555	0	ENST00000298171.2:c.761C>A	p.Ala254Glu	p.A254E	ENST00000298171	NM_000369.2	254	gCa/gAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578466	7578467	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0026527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	864	787	0	ENST00000269305.4:c.463_464delinsTT	p.Thr155Phe	p.T155F	ENST00000269305	NM_001126112.2	155	ACc/TTc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966235	25966235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	256	449	0	ENST00000435504.4:c.2971G>A	p.Gly991Arg	p.G991R	ENST00000435504		991	Gga/Aga																																																																														
FAT1	0	MSKCC	GRCh37	4	187558002	187558002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	143	311	0	ENST00000441802.2:c.3709G>T	p.Asp1237Tyr	p.D1237Y	ENST00000441802	NM_005245.3	1237	Gat/Tat																																																																														
MSH3	0	MSKCC	GRCh37	5	79968560	79968560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0026527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	338	375	0	ENST00000265081.6:c.910G>C	p.Val304Leu	p.V304L	ENST00000265081	NM_002439.4	304	Gtg/Ctg																																																																														
BRAF	0	MSKCC	GRCh37	7	140449109	140449109	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0026527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	266	517	0	ENST00000288602.6:c.1970C>G	p.Ser657Ter	p.S657*	ENST00000288602	NM_004333.4	657	tCa/tGa																																																																														
ARAF	0	MSKCC	GRCh37	X	47424650	47424650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0026527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	580	558	2	ENST00000377045.4:c.459-1G>T		p.X153_splice	ENST00000377045	NM_001654.4	153																																																																															
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	31	215	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
MGA	0	MSKCC	GRCh37	15	42035328	42035329	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	45	413	0	ENST00000219905.7:c.5173_5174del	p.Ser1725ArgfsTer3	p.S1725Rfs*3	ENST00000219905	NM_001164273.1	1724	CTc/c																																																																														
BCOR	0	MSKCC	GRCh37	X	39922109	39922109	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	40	346	0	ENST00000378444.4:c.4063G>T	p.Glu1355Ter	p.E1355*	ENST00000378444	NM_001123385.1	1355	Gag/Tag																																																																														
EGFL7	0	MSKCC	GRCh37	9	139564083	139564083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	73	648	2	ENST00000308874.7:c.223C>T	p.Arg75Cys	p.R75C	ENST00000308874		75	Cgc/Tgc																																																																														
RB1	5925	MSKCC	GRCh37	13	48954327	48954328	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0026535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	54	289	0	ENST00000267163.4:c.1450_1451del	p.Met484ValfsTer8	p.M484Vfs*8	ENST00000267163	NM_000321.2	483	cAT/c																																																																														
MTOR	0	MSKCC	GRCh37	1	11174458	11174458	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	76	543	0	ENST00000361445.4:c.7217T>G	p.Val2406Gly	p.V2406G	ENST00000361445	NM_004958.3	2406	gTg/gGg																																																																														
TP53	0	MSKCC	GRCh37	17	7579385	7579391	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGGG	TTCTGGG	-			P-0026535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	70	703	0	ENST00000269305.4:c.296_302del	p.Ser99Ter	p.S99*	ENST00000269305	NM_001126112.2	99	tCCCAGAAa/ta																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468483	89468483	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	45	361	1	ENST00000336596.2:c.2017A>T	p.Ile673Phe	p.I673F	ENST00000336596	NM_005233.5	673	Att/Ttt																																																																														
PTEN	0	MSKCC	GRCh37	10	89690801	89690805	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGTTG	AGTTG	T			P-0026535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	31	278	0	ENST00000371953.3:c.210-2_212delinsT		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	122	441	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RB1	0	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	84	420	1	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	88	491	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	144	667	0	ENST00000269305.4:c.856G>C	p.Glu286Gln	p.E286Q	ENST00000269305	NM_001126112.2	286	Gaa/Caa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88423587	88423587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	107	540	0	ENST00000360948.2:c.2248G>A	p.Glu750Lys	p.E750K	ENST00000360948	NM_001012338.2	750	Gag/Aag																																																																														
B2M	0	MSKCC	GRCh37	15	45003746	45003746	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	64	385	0	ENST00000558401.1:c.2T>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	aTg/aGg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143067041	143067041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	80	410	0	ENST00000262992.4:c.1672G>A	p.Gly558Arg	p.G558R	ENST00000262992	NM_001101669.1	558	Gga/Aga																																																																														
SESN2	0	MSKCC	GRCh37	1	28601511	28601511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	113	662	0	ENST00000253063.3:c.1196G>T	p.Cys399Phe	p.C399F	ENST00000253063	NM_031459.4	399	tGc/tTc																																																																														
EED	0	MSKCC	GRCh37	11	85956350	85956350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	85	291	0	ENST00000263360.6:c.79G>A	p.Glu27Lys	p.E27K	ENST00000263360	NM_003797.3	27	Gag/Aag																																																																														
MAX	0	MSKCC	GRCh37	14	65544631	65544631	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	88	463	0	ENST00000358664.4:c.295G>C	p.Val99Leu	p.V99L	ENST00000358664	NM_002382.4	99	Gtc/Ctc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2223531	2223532	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	116	751	3	ENST00000326181.6:c.1062_1063delinsGT	p.Phe354_Arg355delinsLeuTrp	p.F354_R355delinsLW	ENST00000326181	NM_032271.2	354	ttCCgg/ttGTgg																																																																														
SLX4	0	MSKCC	GRCh37	16	3639706	3639706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	168	919	0	ENST00000294008.3:c.3933C>G	p.Ile1311Met	p.I1311M	ENST00000294008	NM_032444.2	1311	atC/atG																																																																														
SLX4	0	MSKCC	GRCh37	16	3639878	3639878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	101	655	1	ENST00000294008.3:c.3761C>T	p.Ser1254Leu	p.S1254L	ENST00000294008	NM_032444.2	1254	tCg/tTg																																																																														
FLCN	0	MSKCC	GRCh37	17	17117130	17117130	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	96	509	1	ENST00000285071.4:c.1579C>T	p.Arg527Ter	p.R527*	ENST00000285071	NM_144997.5	527	Cga/Tga																																																																														
NF1	0	MSKCC	GRCh37	17	29508758	29508758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	87	485	0	ENST00000358273.4:c.685G>T	p.Asp229Tyr	p.D229Y	ENST00000358273	NM_001042492.2	229	Gat/Tat																																																																														
BRD4	0	MSKCC	GRCh37	19	15349205	15349205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	129	541	1	ENST00000263377.2:c.4072G>A	p.Glu1358Lys	p.E1358K	ENST00000263377	NM_058243.2	1358	Gaa/Aaa																																																																														
SOS1	0	MSKCC	GRCh37	2	39285837	39285837	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	104	553	0	ENST00000402219.2:c.322G>C	p.Glu108Gln	p.E108Q	ENST00000402219	NM_005633.3	108	Gaa/Caa																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111907638	111907638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	28	305	0	ENST00000393256.3:c.412G>A	p.Glu138Lys	p.E138K	ENST00000393256	NM_006538.4	138	Gaa/Aaa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62316898	62316898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	142	522	1	ENST00000508582.2:c.1286C>T	p.Ser429Phe	p.S429F	ENST00000508582		429	tCc/tTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187540569	187540569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	34	279	0	ENST00000441802.2:c.7171G>A	p.Glu2391Lys	p.E2391K	ENST00000441802	NM_005245.3	2391	Gaa/Aaa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149500823	149500823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	107	618	0	ENST00000261799.4:c.2407C>G	p.Leu803Val	p.L803V	ENST00000261799	NM_002609.3	803	Ctc/Gtc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528718	157528718	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	83	456	0	ENST00000346085.5:c.6443C>G	p.Ala2148Gly	p.A2148G	ENST00000346085	NM_020732.3	2148	gCc/gGc																																																																														
RBM10	0	MSKCC	GRCh37	X	47039871	47039872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	142	354	0	ENST00000329236.7:c.981dup	p.Ala328CysfsTer37	p.A328Cfs*37	ENST00000329236	NM_001204466.1	327	act/acTt																																																																														
TRAF7	0	MSKCC	GRCh37	16	2223532	2223532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	114	751	0	ENST00000326181.6:c.1063C>T	p.Arg355Trp	p.R355W	ENST00000326181	NM_032271.2	355	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	566	628	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	822	799	2	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																														
ETV1	0	MSKCC	GRCh37	7	13971324	13971324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	283	563	0	ENST00000405192.2:c.605C>T	p.Thr202Met	p.T202M	ENST00000405192	NM_001163147.1	202	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0026623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	427	716	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																														
NF1	0	MSKCC	GRCh37	17	29657369	29657369	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	307	520	0	ENST00000358273.4:c.5665G>T	p.Glu1889Ter	p.E1889*	ENST00000358273	NM_001042492.2	1889	Gag/Tag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271785	15271795	+	frameshift_variant	Frame_Shift_Del	DEL	GCCATGTCCTG	GCCATGTCCTG	-			P-0026623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	434	912	1	ENST00000263388.2:c.6644_6654del	p.Pro2215ArgfsTer23	p.P2215Rfs*23	ENST00000263388	NM_000435.2	2215	cCAGGACATGGC/c																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	66	383	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	0	MSKCC	GRCh37	4	1807889	1807889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	179	711	0	ENST00000260795.2:c.1948A>G	p.Lys650Glu	p.K650E	ENST00000260795		650	Aag/Gag																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851601	134851601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	124	648	0	ENST00000398015.3:c.1007C>T	p.Thr336Met	p.T336M	ENST00000398015	NM_004441.4	336	aCg/aTg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061275	38061276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	182	743	0	ENST00000250448.2:c.713dup	p.Lys240GlnfsTer53	p.K240Qfs*53	ENST00000250448	NM_004496.3	238	ccg/ccCg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15942803	15942803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	49	683	0	ENST00000268712.3:c.6899C>T	p.Ser2300Leu	p.S2300L	ENST00000268712	NM_006311.3	2300	tCa/tTa																																																																														
EP300	0	MSKCC	GRCh37	22	41572423	41572429	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGTG	CCATGTG	-			P-0026651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	37	809	0	ENST00000263253.7:c.4953_4959del	p.Met1652CysfsTer55	p.M1652Cfs*55	ENST00000263253	NM_001429.3	1651	aCCATGTGc/ac																																																																														
KDR	0	MSKCC	GRCh37	4	55956194	55956194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	49	659	1	ENST00000263923.4:c.3121G>A	p.Val1041Met	p.V1041M	ENST00000263923	NM_002253.2	1041	Gtg/Atg																																																																														
TAP1	0	MSKCC	GRCh37	6	32813525	32813525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	27	515	0	ENST00000354258.4:c.2258C>T	p.Ser753Phe	p.S753F	ENST00000354258	NM_000593.5	753	tCc/tTc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	583	580	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
ATR	0	MSKCC	GRCh37	3	142286917	142286917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	490	433	0	ENST00000350721.4:c.139G>A	p.Asp47Asn	p.D47N	ENST00000350721	NM_001184.3	47	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	416	706	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
TSC1	0	MSKCC	GRCh37	9	135796795	135796795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	16	483	0	ENST00000298552.3:c.692C>T	p.Pro231Leu	p.P231L	ENST00000298552	NM_001162426.1	231	cCg/cTg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738814	145738814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1508	245	697	0	ENST00000428558.2:c.2251C>T	p.Arg751Trp	p.R751W	ENST00000428558	NM_004260.3	751	Cgg/Tgg																																																																														
SOX9	0	MSKCC	GRCh37	17	70120132	70120133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	265	184	0	ENST00000245479.2:c.1137_1138dupGC	p.His380ArgfsTer4	p.H380Rfs*4	ENST00000245479	NM_000346.3	378	-/GC																																																																														
RET	0	MSKCC	GRCh37	10	43606899	43606899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	537	773	1	ENST00000355710.3:c.1508C>T	p.Thr503Ile	p.T503I	ENST00000355710	NM_020975.4	503	aCa/aTa																																																																														
CDK8	0	MSKCC	GRCh37	13	26959366	26959366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	278	387	0	ENST00000381527.3:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000381527	NM_001260.1	178	cGa/cAa																																																																														
SMAD2	0	MSKCC	GRCh37	18	45422934	45422934	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	211	495	0	ENST00000262160.6:c.194T>C	p.Ile65Thr	p.I65T	ENST00000262160	NM_005901.5	65	aTc/aCc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575206	48575206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	18	427	0	ENST00000342988.3:c.400G>A	p.Glu134Lys	p.E134K	ENST00000342988	NM_005359.5	134	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112174403	112174629	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGAAGGCAAAGTCCTTCACAGAATGAAAGATGGGCAAGACCCAAACACATAATAGAAGATGAAATAAAACAAAGTGAGCAAAGACAATCAAGGAATCAAAGTACAACTTATCCTGTTTATACTGAGAGCACTGATGATAAACACCTCAAGTTCCAACCACATTTTGGACAGCAGGAATGTGTTTCTCCATACAGGTCACGGGGAGCCAATGGTTCAGAAACAAA	TCTGGAAGGCAAAGTCCTTCACAGAATGAAAGATGGGCAAGACCCAAACACATAATAGAAGATGAAATAAAACAAAGTGAGCAAAGACAATCAAGGAATCAAAGTACAACTTATCCTGTTTATACTGAGAGCACTGATGATAAACACCTCAAGTTCCAACCACATTTTGGACAGCAGGAATGTGTTTCTCCATACAGGTCACGGGGAGCCAATGGTTCAGAAACAAA	-			P-0026655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	133	389	0	ENST00000257430.4:c.3114_3340del	p.Gly1039SerfsTer4	p.G1039Sfs*4	ENST00000257430	NM_000038.5	1038	TCTGGAAGGCAAAGTCCTTCACAGAATGAAAGATGGGCAAGACCCAAACACATAATAGAAGATGAAATAAAACAAAGTGAGCAAAGACAATCAAGGAATCAAAGTACAACTTATCCTGTTTATACTGAGAGCACTGATGATAAACACCTCAAGTTCCAACCACATTTTGGACAGCAGGAATGTGTTTCTCCATACAGGTCACGGGGAGCCAATGGTTCAGAAACAAAt/t																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	53	225	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	87	239	0				ENST00000310581	NM_198253.2																																																																																
ATM	0	MSKCC	GRCh37	11	108218089	108218089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	10	228	0	ENST00000278616.4:c.8668C>G	p.Leu2890Val	p.L2890V	ENST00000278616	NM_000051.3	2890	Cta/Gta																																																																														
ATM	0	MSKCC	GRCh37	11	108202231	108202231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	18	283	0	ENST00000278616.4:c.7576A>G	p.Arg2526Gly	p.R2526G	ENST00000278616	NM_000051.3	2526	Aga/Gga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0026666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	198	364	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
RB1	0	MSKCC	GRCh37	13	48955538	48955538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	122	238	0	ENST00000267163.4:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000267163	NM_000321.2	552	Cga/Tga																																																																														
MST1R	0	MSKCC	GRCh37	3	49928834	49928834	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	89	361	2	ENST00000296474.3:c.3532C>T	p.Arg1178Trp	p.R1178W	ENST00000296474	NM_002447.2	1178	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	164	273	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	165	408	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
RRAS2	0	MSKCC	GRCh37	11	14317380	14317380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	69	260	1	ENST00000256196.4:c.130G>T	p.Asp44Tyr	p.D44Y	ENST00000256196		44	Gat/Tat																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793385	242793385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	72	442	0	ENST00000334409.5:c.692G>A	p.Arg231Gln	p.R231Q	ENST00000334409	NM_005018.2	231	cGa/cAa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280142	66280142	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	42	199	0	ENST00000273854.3:c.1547C>G	p.Thr516Arg	p.T516R	ENST00000273854	NM_004439.5	516	aCg/aGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	387	355	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911797	32911797	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	224	289	0	ENST00000380152.3:c.3305A>T	p.Asn1102Ile	p.N1102I	ENST00000380152		1102	aAt/aTt																																																																														
RB1	0	MSKCC	GRCh37	13	48881489	48881490	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGAGAGAGCTTGGTTAACTTGGGAGAAAGTTTCATCTGTG			P-0026668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	142	217	2	ENST00000267163.4:c.214_254dup	p.Asp85GlufsTer6	p.D85Efs*6	ENST00000267163	NM_000321.2	71	aga/aGAGAGAGAGCTTGGTTAACTTGGGAGAAAGTTTCATCTGTGga																																																																														
PALB2	0	MSKCC	GRCh37	16	23647544	23647544	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	266	296	2	ENST00000261584.4:c.323A>T	p.Asn108Ile	p.N108I	ENST00000261584	NM_024675.3	108	aAc/aTc																																																																														
APC	0	MSKCC	GRCh37	5	112173784	112173784	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	127	178	2	ENST00000257430.4:c.2493del	p.Leu831PhefsTer11	p.L831Ffs*11	ENST00000257430	NM_000038.5	831	ttA/tt																																																																														
MET	0	MSKCC	GRCh37	7	116371798	116371798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	203	270	0	ENST00000397752.3:c.1277G>T	p.Arg426Leu	p.R426L	ENST00000397752	NM_000245.2	426	cGc/cTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0026669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	121	322	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18271364	18271364	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	129	304	0	ENST00000222254.8:c.406G>T	p.Glu136Ter	p.E136*	ENST00000222254	NM_005027.3	136	Gaa/Taa																																																																														
EP300	0	MSKCC	GRCh37	22	41573130	41573130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	137	390	1	ENST00000263253.7:c.5415C>A	p.Phe1805Leu	p.F1805L	ENST00000263253	NM_001429.3	1805	ttC/ttA																																																																														
SOX9	0	MSKCC	GRCh37	17	70117755	70117755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	68	345	0	ENST00000245479.2:c.223G>A	p.Glu75Lys	p.E75K	ENST00000245479	NM_000346.3	75	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8115889	8115926	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCCACATGCTGACCACGCCCACGCCGATGCACCCG	CCAGCCACATGCTGACCACGCCCACGCCGATGCACCCG	-			P-0026670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	135	271	0	ENST00000346208.3:c.1238_1275del	p.Ser413IlefsTer81	p.S413Ifs*81	ENST00000346208		412	tCCAGCCACATGCTGACCACGCCCACGCCGATGCACCCG/t																																																																														
TOP1	0	MSKCC	GRCh37	20	39708819	39708819	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	29	110	2	ENST00000361337.2:c.430G>A	p.Asp144Asn	p.D144N	ENST00000361337	NM_003286.2	144	Gat/Aat																																																																														
TP63	0	MSKCC	GRCh37	3	189586386	189586386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	127	357	0	ENST00000264731.3:c.1010G>A	p.Arg337Gln	p.R337Q	ENST00000264731	NM_003722.4	337	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7579468	7579469	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0026510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	136	630	1	ENST00000269305.4:c.218_219del	p.Val73GlyfsTer75	p.V73Gfs*75	ENST00000269305	NM_001126112.2	73	gTG/g																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396214	139396214	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	112	687	0	ENST00000277541.6:c.5624A>G	p.Asn1875Ser	p.N1875S	ENST00000277541	NM_017617.3	1875	aAt/aGt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223844	53223844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	331	915	0	ENST00000375401.3:c.3515C>T	p.Pro1172Leu	p.P1172L	ENST00000375401	NM_004187.3	1172	cCc/cTc																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871027	12871027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	53	343	0	ENST00000228872.4:c.254C>T	p.Pro85Leu	p.P85L	ENST00000228872	NM_004064.3	85	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0026514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	247	660	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
AXL	0	MSKCC	GRCh37	19	41727880	41727880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	68	738	1	ENST00000301178.4:c.505G>A	p.Val169Met	p.V169M	ENST00000301178	NM_021913.4	169	Gtg/Atg																																																																														
IRS1	0	MSKCC	GRCh37	2	227662482	227662482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	104	429	0	ENST00000305123.5:c.973C>T	p.Arg325Cys	p.R325C	ENST00000305123	NM_005544.2	325	Cgt/Tgt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31405812	31405812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	31	380	0	ENST00000344624.3:c.3966G>T	p.Met1322Ile	p.M1322I	ENST00000344624		1322	atG/atT																																																																														
FLT4	0	MSKCC	GRCh37	5	180057627	180057627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	106	824	0	ENST00000261937.6:c.328G>T	p.Val110Phe	p.V110F	ENST00000261937	NM_182925.4	110	Gtc/Ttc																																																																														
AMER1	0	MSKCC	GRCh37	X	63411142	63411142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	66	554	0	ENST00000330258.3:c.2025G>C	p.Gln675His	p.Q675H	ENST00000330258	NM_152424.3	675	caG/caC																																																																														
AR	0	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	96	269	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
APC	0	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	188	418	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																														
CSF3R	0	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	118	762	4	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	308	673	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			609	230	605	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
MSH6	0	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	195	459	0	ENST00000234420.5:c.3312delT	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																																																														
TCF3	0	MSKCC	GRCh37	19	1612346	1612346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	278	893	0	ENST00000344749.5:c.1673G>A	p.Arg558His	p.R558H	ENST00000344749	NM_001136139.2	558	cGc/cAc																																																																														
NEGR1	0	MSKCC	GRCh37	1	72163744	72163744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			761	322	815	1	ENST00000357731.5:c.614C>T	p.Ala205Val	p.A205V	ENST00000357731	NM_173808.2	205	gCg/gTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830441	72830441	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	57	367	0	ENST00000268489.5:c.6140delC	p.Pro2047LeufsTer54	p.P2047Lfs*54	ENST00000268489	NM_006885.3	2047	cCt/ct																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			999	431	922	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2489845	2489845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			860	367	797	1	ENST00000355716.4:c.242G>A	p.Gly81Asp	p.G81D	ENST00000355716	NM_003820.2	81	gGc/gAc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46743782	46743782	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201788900		P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			812	372	808	2	ENST00000371975.4:c.2072G>A	p.Arg691Gln	p.R691Q	ENST00000371975	NM_003579.3	691	cGg/cAg																																																																														
IDH2	0	MSKCC	GRCh37	15	90630476	90630476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			778	376	770	2	ENST00000330062.3:c.835G>A	p.Asp279Asn	p.D279N	ENST00000330062	NM_002168.2	279	Gac/Aac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3823760	3823760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			527	240	496	0	ENST00000262367.5:c.2455G>A	p.Val819Met	p.V819M	ENST00000262367	NM_004380.2	819	Gtg/Atg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45374912	45374912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	340	730	0	ENST00000262160.6:c.931T>C	p.Phe311Leu	p.F311L	ENST00000262160	NM_005901.5	311	Ttc/Ctc																																																																														
ERBB4	0	MSKCC	GRCh37	2	213403245	213403245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	231	664	0	ENST00000342788.4:c.10G>A	p.Ala4Thr	p.A4T	ENST00000342788	NM_005235.2	4	Gcg/Acg																																																																														
MST1	0	MSKCC	GRCh37	3	49725324	49725324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			625	283	575	0	ENST00000449682.2:c.101G>A	p.Arg34His	p.R34H	ENST00000449682	NM_020998.3	34	cGc/cAc																																																																														
BAP1	0	MSKCC	GRCh37	3	52442507	52442507	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			693	281	629	0	ENST00000460680.1:c.238A>G	p.Met80Val	p.M80V	ENST00000460680	NM_004656.3	80	Atg/Gtg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435496	18435497	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	78	308	0	ENST00000266497.5:c.485dup	p.Asn162LysfsTer2	p.N162Kfs*2	ENST00000266497		161	gaa/gAaa																																																																														
UPF1	0	MSKCC	GRCh37	19	18965830	18965830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015211-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			760	104	560	3	ENST00000262803.5:c.1408G>A	p.Asp470Asn	p.D470N	ENST00000262803	NM_002911.3	470	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0026616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	167	831	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0026616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	150	923	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	79	504	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	79	504	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120480479	120480479	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0026616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	70	391	0	ENST00000256646.2:c.3337+1G>T		p.X1113_splice	ENST00000256646	NM_024408.3	1113																																																																															
ARID2	0	MSKCC	GRCh37	12	46246670	46246671	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0026616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	44	233	1	ENST00000334344.6:c.4764_4765delinsTT	p.Val1589Phe	p.V1589F	ENST00000334344	NM_152641.2	1588	gtGGtc/gtTTtc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561303	9561303	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	87	504	0	ENST00000353224.5:c.479A>T	p.Tyr160Phe	p.Y160F	ENST00000353224	NM_177990.2	160	tAt/tTt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36206815	36206816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025944-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			675	48	566	0	ENST00000300305.3:c.696dup	p.Arg233AlafsTer28	p.R233Afs*28	ENST00000300305		232	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0026611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	316	678	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TET1	0	MSKCC	GRCh37	10	70450636	70450636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	307	499	1	ENST00000373644.4:c.5476G>A	p.Asp1826Asn	p.D1826N	ENST00000373644	NM_030625.2	1826	Gac/Aac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829101	72829101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	89	541	1	ENST00000268489.5:c.7480T>A	p.Leu2494Ile	p.L2494I	ENST00000268489	NM_006885.3	2494	Tta/Ata																																																																														
KMT2C	0	MSKCC	GRCh37	7	152012245	152012245	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	473	407	0	ENST00000262189.6:c.568C>T	p.Arg190Ter	p.R190*	ENST00000262189	NM_170606.2	190	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	159	586	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0026613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	161	475	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	247	871	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729162	66729162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	208	813	1	ENST00000307102.5:c.370C>T	p.Pro124Ser	p.P124S	ENST00000307102	NM_002755.3	124	Ccg/Tcg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100954	27100955	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCA			P-0026613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	195	755	0	ENST00000324856.7:c.4243_4246dup	p.Gln1416ProfsTer30	p.Q1416Pfs*30	ENST00000324856	NM_006015.4	1412	-/GCCA																																																																														
RB1	0	MSKCC	GRCh37	13	49039235	49039235	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	181	658	1	ENST00000267163.4:c.2313T>A	p.Tyr771Ter	p.Y771*	ENST00000267163	NM_000321.2	771	taT/taA																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591900	48591914	+	inframe_deletion	In_Frame_Del	DEL	GACCCTTCTGGAGGA	GACCCTTCTGGAGGA	-			P-0026613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	107	613	0	ENST00000342988.3:c.1065_1079del	p.Pro356_Asp360del	p.P356_D360del	ENST00000342988	NM_005359.5	355	GACCCTTCTGGAGGA/-																																																																														
RAD50	0	MSKCC	GRCh37	5	131923743	131923743	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	127	583	0	ENST00000265335.6:c.1014del	p.Leu339SerfsTer32	p.L339Sfs*32	ENST00000265335		338	cTt/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	309	508	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SETD2	0	MSKCC	GRCh37	3	47087991	47087991	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	241	479	0	ENST00000409792.3:c.7084C>T	p.Gln2362Ter	p.Q2362*	ENST00000409792	NM_014159.6	2362	Cag/Tag																																																																														
FLT1	0	MSKCC	GRCh37	13	28919638	28919638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	303	552	0	ENST00000282397.4:c.2299G>T	p.Val767Leu	p.V767L	ENST00000282397	NM_002019.4	767	Gtg/Ttg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41420080	41420080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	152	301	0	ENST00000373198.4:c.241G>T	p.Gly81Trp	p.G81W	ENST00000373198	NM_133170.3	81	Ggg/Tgg																																																																														
ATM	0	MSKCC	GRCh37	11	108164086	108164086	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	112	206	0	ENST00000278616.4:c.4661del	p.Asn1554ThrfsTer9	p.N1554Tfs*9	ENST00000278616	NM_000051.3	1553	gAa/ga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593492	48593492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	167	340	0	ENST00000342988.3:c.1243G>C	p.Asp415His	p.D415H	ENST00000342988	NM_005359.5	415	Gac/Cac																																																																														
CSF1R	0	MSKCC	GRCh37	5	149453025	149453025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	202	429	0	ENST00000286301.3:c.921G>T	p.Gln307His	p.Q307H	ENST00000286301	NM_005211.3	307	caG/caT																																																																														
ABL1	0	MSKCC	GRCh37	9	133759821	133759821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	245	551	1	ENST00000318560.5:c.2144G>T	p.Arg715Leu	p.R715L	ENST00000318560	NM_005157.4	715	cGc/cTc																																																																														
RBM10	0	MSKCC	GRCh37	X	47040613	47040613	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0026624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	156	377	0	ENST00000329236.7:c.1015-1G>T		p.X339_splice	ENST00000329236	NM_001204466.1	339																																																																															
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	347	790	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
DDR2	0	MSKCC	GRCh37	1	162725507	162725507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	84	530	0	ENST00000367921.3:c.619G>A	p.Gly207Ser	p.G207S	ENST00000367921	NM_006182.2	207	Ggt/Agt																																																																														
GNAS	0	MSKCC	GRCh37	20	57485389	57485389	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	66	275	0	ENST00000371085.3:c.971C>T	p.Ala324Val	p.A324V	ENST00000371085	NM_000516.4	324	gCt/gTt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453138	140453139	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0026151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	228	570	0	ENST00000288602.6:c.1794_1796dupTAC	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	aca/acTACa																																																																														
AXL	0	MSKCC	GRCh37	19	41744048	41744048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	162	598	1	ENST00000301178.4:c.983C>T	p.Thr328Met	p.T328M	ENST00000301178	NM_021913.4	328	aCg/aTg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18278061	18278061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	220	720	0	ENST00000222254.8:c.1681A>G	p.Asn561Asp	p.N561D	ENST00000222254	NM_005027.3	561	Aac/Gac																																																																														
EPHA3	0	MSKCC	GRCh37	3	89457251	89457252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	127	419	0	ENST00000336596.2:c.1738dup	p.Arg580LysfsTer19	p.R580Kfs*19	ENST00000336596	NM_005233.5	578	gaa/gAaa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114900823	114900953	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCATCTTAGAAAATCCAGGTGAGAGGCTGTGGCCAAGGGAACCCACGGGCCCGGTGCTCTGAAGCCCTGGGCTGCTGGAACCGGCTTGACGGTGTCTTTCTCTGTTCTCCTCCCCACAGTCTAACAAAGT	TGCATCTTAGAAAATCCAGGTGAGAGGCTGTGGCCAAGGGAACCCACGGGCCCGGTGCTCTGAAGCCCTGGGCTGCTGGAACCGGCTTGACGGTGTCTTTCTCTGTTCTCCTCCCCACAGTCTAACAAAGT	-			P-0026162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	124	68	0	ENST00000543371.1:c.553-120_563del		p.X185_splice	ENST00000543371	NM_001198531.1	185																																																																															
GRIN2A	0	MSKCC	GRCh37	16	9934603	9934603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	139	509	0	ENST00000330684.3:c.1552C>A	p.Arg518Ser	p.R518S	ENST00000330684	NM_001134407.1	518	Cgt/Agt																																																																														
ASXL2	0	MSKCC	GRCh37	2	25976402	25976402	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0026162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	169	456	0	ENST00000435504.4:c.1142+1G>C		p.X381_splice	ENST00000435504		381																																																																															
RB1	0	MSKCC	GRCh37	13	48936995	48936995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	254	482	0	ENST00000267163.4:c.763C>T	p.Arg255Ter	p.R255*	ENST00000267163	NM_000321.2	255	Cga/Tga																																																																														
SETD8	0	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0026173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	11	35	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																														
AMER1	0	MSKCC	GRCh37	X	63411387	63411387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	414	483	2	ENST00000330258.3:c.1780C>A	p.His594Asn	p.H594N	ENST00000330258	NM_152424.3	594	Cac/Aac																																																																														
MUTYH	0	MSKCC	GRCh37	1	45795034	45795034	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	482	559	0	ENST00000372115.3:c.1552T>G	p.Phe518Val	p.F518V	ENST00000372115	NM_001048171.1	518	Ttc/Gtc																																																																														
AKT1	0	MSKCC	GRCh37	14	105239651	105239651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	498	610	0	ENST00000349310.3:c.894G>C	p.Glu298Asp	p.E298D	ENST00000349310	NM_001014432.1	298	gaG/gaC																																																																														
TP53	0	MSKCC	GRCh37	17	7576901	7576922	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGGAGCTGGTGTTGTTGGGC	AGAGGAGCTGGTGTTGTTGGGC	-			P-0026173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	463	518	0	ENST00000269305.4:c.924_945del	p.Asn310SerfsTer28	p.N310Sfs*28	ENST00000269305	NM_001126112.2	308	ctGCCCAACAACACCAGCTCCTCT/ct																																																																														
NF1	0	MSKCC	GRCh37	17	29687664	29687664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	726	571	1	ENST00000358273.4:c.8320G>T	p.Ala2774Ser	p.A2774S	ENST00000358273	NM_001042492.2	2774	Gcc/Tcc																																																																														
BCOR	0	MSKCC	GRCh37	X	39921448	39921448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	174	425	0	ENST00000378444.4:c.4372G>T	p.Val1458Phe	p.V1458F	ENST00000378444	NM_001123385.1	1458	Gtc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	127	683	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
MYCL1	0	MSKCC	GRCh37	1	40363247	40363247	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112099561		P-0026175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	80	383	0	ENST00000397332.2:c.982C>T	p.Arg328Cys	p.R328C	ENST00000397332	NM_001033082.2	328	Cgt/Tgt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37865580	37865580	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	416	611	0	ENST00000269571.5:c.449A>G	p.Lys150Arg	p.K150R	ENST00000269571		150	aAa/aGa																																																																														
MSH2	0	MSKCC	GRCh37	2	47703657	47703657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	64	407	1	ENST00000233146.2:c.2157G>T	p.Leu719Phe	p.L719F	ENST00000233146	NM_000251.2	719	ttG/ttT																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468389	89468389	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	42	224	0	ENST00000336596.2:c.1923A>T	p.Lys641Asn	p.K641N	ENST00000336596	NM_005233.5	641	aaA/aaT																																																																														
PREX2	0	MSKCC	GRCh37	8	68942852	68942852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	62	638	0	ENST00000288368.4:c.664G>A	p.Glu222Lys	p.E222K	ENST00000288368	NM_024870.2	222	Gaa/Aaa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399799	139399799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	63	570	0	ENST00000277541.6:c.4549G>T	p.Asp1517Tyr	p.D1517Y	ENST00000277541	NM_017617.3	1517	Gac/Tac																																																																														
BRCA2	0	MSKCC	GRCh37	13	32893363	32893363	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	409	575	0	ENST00000380152.3:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000380152		73	Cag/Tag																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793244	242793244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	300	703	1	ENST00000334409.5:c.833G>T	p.Arg278Met	p.R278M	ENST00000334409	NM_005018.2	278	aGg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	610	658	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
LATS2	0	MSKCC	GRCh37	13	21553909	21553911	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0026389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	113	442	0	ENST00000382592.4:c.2691_2693del	p.Trp897_Ser898delinsCys	p.W897_S898delinsC	ENST00000382592	NM_014572.2	897	tgGAGt/tgt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15995197	15995197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	134	549	0	ENST00000268712.3:c.2996G>A	p.Ser999Asn	p.S999N	ENST00000268712	NM_006311.3	999	aGt/aAt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244217	5244217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	157	556	0	ENST00000357368.4:c.1265G>T	p.Gly422Val	p.G422V	ENST00000357368	NM_002850.3	422	gGc/gTc																																																																														
AXL	0	MSKCC	GRCh37	19	41748914	41748914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	115	493	1	ENST00000301178.4:c.1439G>T	p.Arg480Leu	p.R480L	ENST00000301178	NM_021913.4	480	cGt/cTt																																																																														
MED12	0	MSKCC	GRCh37	X	70352288	70352288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	154	318	0	ENST00000374080.3:c.4315G>T	p.Val1439Phe	p.V1439F	ENST00000374080		1439	Gtc/Ttc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120512257	120512257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	141	597	1	ENST00000256646.2:c.985G>A	p.Gly329Ser	p.G329S	ENST00000256646	NM_024408.3	329	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	218	695	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	176	543	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420109	49420109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	77	665	0	ENST00000301067.7:c.15640C>T	p.Arg5214Cys	p.R5214C	ENST00000301067	NM_003482.3	5214	Cgc/Tgc																																																																														
TBX3	0	MSKCC	GRCh37	12	115114259	115114259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	84	596	1	ENST00000257566.3:c.958C>A	p.Gln320Lys	p.Q320K	ENST00000257566	NM_016569.3	320	Cag/Aag																																																																														
MGA	0	MSKCC	GRCh37	15	42041864	42041865	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	68	650	0	ENST00000219905.7:c.6061_6062del	p.Leu2021GlufsTer2	p.L2021Efs*2	ENST00000219905	NM_001164273.1	2020	aCT/a																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096166	178096166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	55	448	0	ENST00000397062.3:c.1165A>G	p.Lys389Glu	p.K389E	ENST00000397062	NM_006164.4	389	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	391	514	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175248	112175249	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	289	295	1	ENST00000257430.4:c.3959_3960delTG	p.Val1320GlufsTer11	p.V1320Efs*11	ENST00000257430	NM_000038.5	1319	ccTGtg/cctg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	316	546	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
FYN	0	MSKCC	GRCh37	6	112041197	112041197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	161	411	0	ENST00000368678.4:c.58G>A	p.Gly20Ser	p.G20S	ENST00000368678		20	Ggc/Agc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15289720	15289720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	458	706	0	ENST00000263388.2:c.3751G>A	p.Glu1251Lys	p.E1251K	ENST00000263388	NM_000435.2	1251	Gag/Aag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943628	9943628	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	106	482	0	ENST00000330684.3:c.1313A>C	p.Lys438Thr	p.K438T	ENST00000330684	NM_001134407.1	438	aAg/aCg																																																																														
JAK2	0	MSKCC	GRCh37	9	5050753	5050753	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	135	523	0	ENST00000381652.3:c.536T>A	p.Leu179His	p.L179H	ENST00000381652	NM_004972.3	179	cTt/cAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	106	373	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	106	373	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	106	373	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	431	710	1	ENST00000269305.4:c.326T>G	p.Phe109Cys	p.F109C	ENST00000269305	NM_001126112.2	109	tTc/tGc																																																																														
DICER1	0	MSKCC	GRCh37	14	95560382	95560382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	176	557	0	ENST00000343455.3:c.5207G>T	p.Arg1736Leu	p.R1736L	ENST00000343455	NM_177438.2	1736	cGg/cTg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88476406	88476406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	192	389	0	ENST00000360948.2:c.1726G>A	p.Asp576Asn	p.D576N	ENST00000360948	NM_001012338.2	576	Gat/Aat																																																																														
NF1	0	MSKCC	GRCh37	17	29576098	29576098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	194	560	1	ENST00000358273.4:c.4076del	p.Pro1359LeufsTer19	p.P1359Lfs*19	ENST00000358273	NM_001042492.2	1357	ttC/tt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120484353	120484353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	82	457	0	ENST00000256646.2:c.2777G>C	p.Cys926Ser	p.C926S	ENST00000256646	NM_024408.3	926	tGt/tCt																																																																														
PTPN11	0	MSKCC	GRCh37	12	112891093	112891093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	143	577	2	ENST00000351677.2:c.427C>T	p.His143Tyr	p.H143Y	ENST00000351677	NM_002834.3	143	Cac/Tac																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515076	103515076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	256	314	0	ENST00000355739.4:c.1577C>T	p.Ser526Phe	p.S526F	ENST00000355739	NM_000123.3	526	tCt/tTt																																																																														
ERCC2	0	MSKCC	GRCh37	19	45871995	45871995	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	239	458	0	ENST00000391945.4:c.253G>T	p.Glu85Ter	p.E85*	ENST00000391945	NM_000400.3	85	Gaa/Taa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877373	40877373	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1230	290	551	0	ENST00000373198.4:c.2323del	p.Met775CysfsTer9	p.M775Cfs*9	ENST00000373198	NM_133170.3	775	Atg/tg																																																																														
MYD88	0	MSKCC	GRCh37	3	38180379	38180379	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	145	693	2	ENST00000396334.3:c.228del	p.Gln76HisfsTer24	p.Q76Hfs*24	ENST00000396334	NM_002468.4	76	cAa/ca																																																																														
ARID1B	0	MSKCC	GRCh37	6	157505528	157505528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	85	352	0	ENST00000346085.5:c.3509G>T	p.Gly1170Val	p.G1170V	ENST00000346085	NM_020732.3	1170	gGg/gTg																																																																														
HGF	0	MSKCC	GRCh37	7	81388074	81388075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	111	549	1	ENST00000222390.5:c.300dup	p.Phe101LeufsTer3	p.F101Lfs*3	ENST00000222390	NM_000601.4	100	-/C																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	128	430	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	74	529	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	102	517	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245506	153245506	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	32	463	0	ENST00000281708.4:c.1685C>A	p.Ser562Ter	p.S562*	ENST00000281708	NM_033632.3	562	tCa/tAa																																																																														
TSC2	0	MSKCC	GRCh37	16	2111996	2111996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	34	443	0	ENST00000219476.3:c.1244C>T	p.Ala415Val	p.A415V	ENST00000219476	NM_000548.3	415	gCg/gTg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244148	153244148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	64	444	2	ENST00000281708.4:c.2009G>A	p.Gly670Glu	p.G670E	ENST00000281708	NM_033632.3	670	gGa/gAa																																																																														
JAK1	0	MSKCC	GRCh37	1	65339205	65339205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	29	374	0	ENST00000342505.4:c.331T>C	p.Phe111Leu	p.F111L	ENST00000342505	NM_002227.2	111	Ttc/Ctc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467484	66467484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	32	318	0	ENST00000273854.3:c.785G>T	p.Cys262Phe	p.C262F	ENST00000273854	NM_004439.5	262	tGt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	427	595	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
RYBP	0	MSKCC	GRCh37	3	72495704	72495704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	511	448	1	ENST00000477973.2:c.366A>G	p.Asn123Ser	p.N123S	ENST00000477973	NM_012234.5	123	aAc/aGc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	244	584	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	89	543	1	ENST00000263967.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaT																																																																														
TP53	0	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	461	658	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																																																														
BARD1	0	MSKCC	GRCh37	2	215645739	215645739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	58	487	0	ENST00000260947.4:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000260947	NM_000465.2	287	Gag/Cag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211883	36211883	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202218975		P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1376	75	787	1	ENST00000222270.7:c.1634G>A	p.Arg545Gln	p.R545Q	ENST00000222270	NM_014727.1	545	cGa/cAa																																																																														
CSDE1	0	MSKCC	GRCh37	1	115280688	115280688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	72	474	0	ENST00000438362.2:c.343G>A	p.Val115Ile	p.V115I	ENST00000438362	NM_001242891.1	115	Gtt/Att																																																																														
FH	0	MSKCC	GRCh37	1	241680493	241680493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	71	556	0	ENST00000366560.3:c.256G>A	p.Glu86Lys	p.E86K	ENST00000366560	NM_000143.3	86	Gaa/Aaa																																																																														
HRAS	0	MSKCC	GRCh37	11	533569	533569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	176	676	1	ENST00000311189.7:c.334G>A	p.Val112Met	p.V112M	ENST00000311189		112	Gtg/Atg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350074	89350074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	82	682	0	ENST00000301030.4:c.2876A>G	p.Lys959Arg	p.K959R	ENST00000301030	NM_001256183.1	959	aAg/aGg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16075149	16075149	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	95	388	0	ENST00000268712.3:c.403G>T	p.Glu135Ter	p.E135*	ENST00000268712	NM_006311.3	135	Gaa/Taa																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257983	19257983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1576	279	774	0	ENST00000162023.5:c.403C>T	p.Pro135Ser	p.P135S	ENST00000162023		135	Cct/Tct																																																																														
MSH2	0	MSKCC	GRCh37	2	47643551	47643551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	134	555	0	ENST00000233146.2:c.1059G>C	p.Lys353Asn	p.K353N	ENST00000233146	NM_000251.2	353	aaG/aaC																																																																														
RAC2	0	MSKCC	GRCh37	22	37628020	37628020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	198	637	0	ENST00000249071.6:c.240C>G	p.Ile80Met	p.I80M	ENST00000249071	NM_002872.4	80	atC/atG																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099283	157099283	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	132	428	0	ENST00000346085.5:c.220G>T	p.Glu74Ter	p.E74*	ENST00000346085	NM_020732.3	74	Gaa/Taa																																																																														
RBM10	0	MSKCC	GRCh37	X	47040962	47040962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	62	636	2	ENST00000329236.7:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000329236	NM_001204466.1	420	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0026422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	86	295	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0026422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	127	463	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
PTPRS	0	MSKCC	GRCh37	19	5243944	5243944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	109	549	1	ENST00000357368.4:c.1538C>T	p.Ser513Leu	p.S513L	ENST00000357368	NM_002850.3	513	tCg/tTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306574	41306575	+	missense_variant	Missense_Mutation	DNP	AG	AG	CA			P-0026422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	151	646	2	ENST00000373198.4:c.1084_1085delinsTG	p.Leu362Cys	p.L362C	ENST00000373198	NM_133170.3	362	CTc/TGc																																																																														
APC	0	MSKCC	GRCh37	5	112170727	112170728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTA			P-0026422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	86	573	0	ENST00000257430.4:c.1824_1827dup	p.Asp610CysfsTer25	p.D610Cfs*25	ENST00000257430	NM_000038.5	608	gct/gcTGTAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420606	49420606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	307	629	0	ENST00000301067.7:c.15143G>A	p.Arg5048His	p.R5048H	ENST00000301067	NM_003482.3	5048	cGt/cAt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251635	212251635	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	115	455	2	ENST00000342788.4:c.3424C>T	p.Arg1142Ter	p.R1142*	ENST00000342788	NM_005235.2	1142	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25380183	25380183	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	165	444	0	ENST00000256078.4:c.275A>T	p.Asp92Val	p.D92V	ENST00000256078	NM_033360.2	92	gAt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0026425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	469	770	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98238356	98238356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	61	559	0	ENST00000331920.6:c.1688C>T	p.Ala563Val	p.A563V	ENST00000331920	NM_000264.3	563	gCg/gTg																																																																														
PMS1	0	MSKCC	GRCh37	2	190738292	190738293	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0026425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	62	473	0	ENST00000441310.2:c.2544_2545delinsTT	p.Asp849Tyr	p.D849Y	ENST00000441310	NM_000534.4	848	gcAGat/gcTTat																																																																														
APC	0	MSKCC	GRCh37	5	112174891	112174891	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	265	397	0	ENST00000257430.4:c.3601del	p.Ser1201HisfsTer64	p.S1201Hfs*64	ENST00000257430	NM_000038.5	1200	agT/ag																																																																														
PARK2	0	MSKCC	GRCh37	6	161771151	161771151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	149	743	0	ENST00000366898.1:c.1378G>T	p.Asp460Tyr	p.D460Y	ENST00000366898	NM_004562.2	460	Gac/Tac																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106519968	106519968	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	89	291	0	ENST00000359195.3:c.2400del	p.Lys800AsnfsTer4	p.K800Nfs*4	ENST00000359195	NM_002649.2	799	gAa/ga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0026426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	18	509	1	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	193	649	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
SRSF2	0	MSKCC	GRCh37	17	74733140	74733140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	45	699	2	ENST00000359995.5:c.103G>C	p.Glu35Gln	p.E35Q	ENST00000359995	NM_001195427.1	35	Gag/Cag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37872029	37872029	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	55	810	0	ENST00000269571.5:c.1350C>G	p.Ile450Met	p.I450M	ENST00000269571		450	atC/atG																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188868	32188868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	52	663	0	ENST00000375023.3:c.686C>T	p.Pro229Leu	p.P229L	ENST00000375023	NM_004557.3	229	cCa/cTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	443	610	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	373	434	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	373	434	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
SPEN	0	MSKCC	GRCh37	1	16260876	16260876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	159	491	0	ENST00000375759.3:c.8141C>T	p.Thr2714Met	p.T2714M	ENST00000375759	NM_015001.2	2714	aCg/aTg																																																																														
PALB2	0	MSKCC	GRCh37	16	23641544	23641544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	529	620	0	ENST00000261584.4:c.1931G>A	p.Gly644Glu	p.G644E	ENST00000261584	NM_024675.3	644	gGa/gAa																																																																														
RHOA	0	MSKCC	GRCh37	3	49399952	49399952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	243	617	0	ENST00000418115.1:c.385C>T	p.Arg129Trp	p.R129W	ENST00000418115	NM_001664.2	129	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	564	720	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
RRAGC	0	MSKCC	GRCh37	1	39325171	39325171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	345	666	0	ENST00000373001.3:c.148G>T	p.Gly50Cys	p.G50C	ENST00000373001	NM_022157.3	50	Ggt/Tgt																																																																														
RB1	0	MSKCC	GRCh37	13	48937081	48937081	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	378	329	1	ENST00000267163.4:c.849T>A	p.Cys283Ter	p.C283*	ENST00000267163	NM_000321.2	283	tgT/tgA																																																																														
CIC	0	MSKCC	GRCh37	19	42796554	42796554	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	395	703	0	ENST00000575354.2:c.3111del	p.Val1038Ter	p.V1038*	ENST00000575354	NM_015125.3	1037	tcT/tc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	120	339	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	182	500	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473728	67473728	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	264	720	0	ENST00000327367.4:c.808T>A	p.Cys270Ser	p.C270S	ENST00000327367	NM_005902.3	270	Tgc/Agc																																																																														
NF1	0	MSKCC	GRCh37	17	29667657	29667657	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	156	475	0	ENST00000358273.4:c.7056del	p.Asn2352LysfsTer44	p.N2352Kfs*44	ENST00000358273	NM_001042492.2	2352	aaT/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7578259	7578259	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	206	784	0	ENST00000269305.4:c.590T>A	p.Val197Glu	p.V197E	ENST00000269305	NM_001126112.2	197	gTg/gAg																																																																														
RB1	0	MSKCC	GRCh37	13	48947593	48947593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	122	660	1	ENST00000267163.4:c.1180G>A	p.Asp394Asn	p.D394N	ENST00000267163	NM_000321.2	394	Gat/Aat																																																																														
BAP1	0	MSKCC	GRCh37	3	52440334	52440334	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	87	353	0	ENST00000460680.1:c.718A>T	p.Lys240Ter	p.K240*	ENST00000460680	NM_004656.3	240	Aag/Tag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52620665	52620665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			628	42	424	1	ENST00000394830.3:c.3088G>T	p.Asp1030Tyr	p.D1030Y	ENST00000394830	NM_018313.4	1030	Gat/Tat																																																																														
STAG2	0	MSKCC	GRCh37	X	123179198	123179198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	18	202	0	ENST00000218089.9:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000218089	NM_001042749.1	216	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	19	169	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	316	531	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	250	309	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	337	373	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023449	27023449	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	42	570	0	ENST00000324856.7:c.555G>C	p.Gln185His	p.Q185H	ENST00000324856	NM_006015.4	185	caG/caC																																																																														
MDM4	0	MSKCC	GRCh37	1	204518244	204518244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	40	260	0	ENST00000367182.3:c.907G>A	p.Glu303Lys	p.E303K	ENST00000367182	NM_001278516.1	303	Gag/Aag																																																																														
ERCC3	0	MSKCC	GRCh37	2	128051250	128051250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	194	413	0	ENST00000285398.2:c.73G>C	p.Asp25His	p.D25H	ENST00000285398	NM_000122.1	25	Gat/Cat																																																																														
MST1R	0	MSKCC	GRCh37	3	49940456	49940456	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	309	735	1	ENST00000296474.3:c.587A>G	p.Tyr196Cys	p.Y196C	ENST00000296474	NM_002447.2	196	tAt/tGt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143352367	143352367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	44	360	0	ENST00000262992.4:c.46C>G	p.Leu16Val	p.L16V	ENST00000262992	NM_001101669.1	16	Ctt/Gtt																																																																														
PTEN	0	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	23	150	0	ENST00000371953.3:c.176C>G	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tGa																																																																														
PTEN	0	MSKCC	GRCh37	10	89712015	89712015	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	88	118	0	ENST00000371953.3:c.633C>A	p.Cys211Ter	p.C211*	ENST00000371953	NM_000314.4	211	tgC/tgA																																																																														
ATM	0	MSKCC	GRCh37	11	108143509	108143509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	95	486	0	ENST00000278616.4:c.3214G>A	p.Glu1072Lys	p.E1072K	ENST00000278616	NM_000051.3	1072	Gaa/Aaa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435419	18435419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	60	353	0	ENST00000266497.5:c.404G>C	p.Gly135Ala	p.G135A	ENST00000266497		135	gGt/gCt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32915168	32915168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	738	787	0	ENST00000380152.3:c.6676G>C	p.Glu2226Gln	p.E2226Q	ENST00000380152		2226	Gaa/Caa																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24143174	24143174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	42	457	0	ENST00000263121.7:c.406C>T	p.Pro136Ser	p.P136S	ENST00000263121	NM_003073.3	136	Ccc/Tcc																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	341	432	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566711	212566711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	161	493	0	ENST00000342788.4:c.1470C>G	p.Asn490Lys	p.N490K	ENST00000342788	NM_005235.2	490	aaC/aaG																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56189442	56189442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	137	566	0	ENST00000399503.3:c.4474C>T	p.Gln1492Ter	p.Q1492*	ENST00000399503	NM_005921.1	1492	Caa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	106	301	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	103	404	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	293	368	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	280	458	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
JAK2	0	MSKCC	GRCh37	9	5069931	5069931	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	93	262	0	ENST00000381652.3:c.1520C>G	p.Ser507Ter	p.S507*	ENST00000381652	NM_004972.3	507	tCa/tGa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604836	48604836	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0005997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	114	311	1	ENST00000342988.3:c.1658G>T	p.Ter553LeuextTer40	p.*553Lext*40	ENST00000342988	NM_005359.5	553	tGa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	66	509	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	0	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	55	436	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																														
CBL	0	MSKCC	GRCh37	11	119156089	119156089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	124	543	1	ENST00000264033.4:c.1754G>A	p.Arg585His	p.R585H	ENST00000264033	NM_005188.3	585	cGc/cAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581211	48581211	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	80	488	0	ENST00000342988.3:c.515T>A	p.Leu172Ter	p.L172*	ENST00000342988	NM_005359.5	172	tTg/tAg																																																																														
JAK3	0	MSKCC	GRCh37	19	17940947	17940947	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	26	374	0	ENST00000458235.1:c.3177G>T	p.Arg1059Ser	p.R1059S	ENST00000458235	NM_000215.3	1059	agG/agT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	127	384	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578407	7578412	+	protein_altering_variant	In_Frame_Del	DEL	GCCTCA	GCCTCA	CCC			P-0008909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	117	278	0	ENST00000269305.4:c.518_523delinsGGG	p.Val173_Arg175delinsGlyGly	p.V173_R175delinsGG	ENST00000269305	NM_001126112.2	173	gTGAGGCgc/gGGGgc																																																																														
ARID2	0	MSKCC	GRCh37	12	46254583	46254583	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0026164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	141	340	0	ENST00000334344.6:c.4774-1G>A		p.X1592_splice	ENST00000334344	NM_152641.2	1592																																																																															
NTRK1	0	MSKCC	GRCh37	1	156846235	156846235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201564883		P-0026164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	110	564	0	ENST00000524377.1:c.1676G>A	p.Arg559His	p.R559H	ENST00000524377	NM_002529.3	559	cGt/cAt																																																																														
XPO1	0	MSKCC	GRCh37	2	61709597	61709597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	121	310	0	ENST00000401558.2:c.2890C>G	p.Pro964Ala	p.P964A	ENST00000401558	NM_003400.3	964	Cct/Gct																																																																														
TET2	0	MSKCC	GRCh37	4	106155275	106155275	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	53	338	1	ENST00000380013.4:c.176G>C	p.Ser59Thr	p.S59T	ENST00000380013	NM_001127208.2	59	aGt/aCt																																																																														
KIT	0	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	108	504	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600369	10600369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	380	760	0	ENST00000171111.5:c.1486G>T	p.Glu496Ter	p.E496*	ENST00000171111	NM_203500.1	496	Gag/Tag																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	12	20	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576183	88576183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	148	578	0	ENST00000360948.2:c.1490G>T	p.Gly497Val	p.G497V	ENST00000360948	NM_001012338.2	497	gGg/gTg																																																																														
BRAF	0	MSKCC	GRCh37	7	140481412	140481412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	124	449	0	ENST00000288602.6:c.1396G>C	p.Gly466Arg	p.G466R	ENST00000288602	NM_004333.4	466	Gga/Cga																																																																														
RET	0	MSKCC	GRCh37	10	43606895	43606895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	193	812	1	ENST00000355710.3:c.1504G>A	p.Val502Ile	p.V502I	ENST00000355710	NM_020975.4	502	Gta/Ata																																																																														
IGF2	0	MSKCC	GRCh37	11	2156691	2156691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	150	686	0	ENST00000434045.2:c.231C>G	p.Cys77Trp	p.C77W	ENST00000434045	NM_001127598.1	77	tgC/tgG																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18691123	18691123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	93	441	0	ENST00000266497.5:c.3234G>T	p.Met1078Ile	p.M1078I	ENST00000266497		1078	atG/atT																																																																														
ARID2	0	MSKCC	GRCh37	12	46244311	46244311	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	96	406	0	ENST00000334344.6:c.2405T>G	p.Phe802Cys	p.F802C	ENST00000334344	NM_152641.2	802	tTt/tGt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7984200	7984203	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACTC	ACTC	-			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	118	495	0	ENST00000319144.4:c.526_527+2del		p.X176_splice	ENST00000319144	NM_001139.2	176																																																																															
STK11	0	MSKCC	GRCh37	19	1206976	1206979	+	frameshift_variant	Frame_Shift_Del	DEL	ATGG	ATGG	-			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	303	548	0	ENST00000326873.7:c.65_68del	p.Met22ThrfsTer28	p.M22Tfs*28	ENST00000326873	NM_000455.4	22	ATGGac/ac																																																																														
MSH2	0	MSKCC	GRCh37	2	47643565	47643565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	90	449	0	ENST00000233146.2:c.1073A>G	p.Glu358Gly	p.E358G	ENST00000233146	NM_000251.2	358	gAg/gGg																																																																														
PMS1	0	MSKCC	GRCh37	2	190719484	190719484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	63	321	0	ENST00000441310.2:c.1486G>A	p.Asp496Asn	p.D496N	ENST00000441310	NM_000534.4	496	Gat/Aat																																																																														
FLT4	0	MSKCC	GRCh37	5	180048758	180048758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	190	653	1	ENST00000261937.6:c.1804C>T	p.His602Tyr	p.H602Y	ENST00000261937	NM_182925.4	602	Cac/Tac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8460552	8460552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	111	407	0	ENST00000356435.5:c.3734C>A	p.Pro1245His	p.P1245H	ENST00000356435		1245	cCt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0026169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	280	696	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0026169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	80	427	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	103	531	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36941101	36941101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	103	630	0	ENST00000361632.4:c.238G>A	p.Asp80Asn	p.D80N	ENST00000361632		80	Gat/Aat																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138196119	138196119	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	33	313	1	ENST00000237289.4:c.433G>T	p.Glu145Ter	p.E145*	ENST00000237289	NM_001270507.1	145	Gag/Tag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32950807	32950807	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0026171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	48	335	0	ENST00000380152.3:c.8636del	p.Asn2879ThrfsTer12	p.N2879Tfs*12	ENST00000380152		2878	gAa/ga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928036	178928037	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAAAAATGGCTTTGAATCTTTGGCCAGTACCTCATGGATTAGAA			P-0026171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	46	481	0	ENST00000263967.3:c.1316_1360dup	p.Gly439_Glu453dup	p.G439_E453dup	ENST00000263967	NM_006218.2	439	-/GGAAAAATGGCTTTGAATCTTTGGCCAGTACCTCATGGATTAGAA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	161	583	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	62	677	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928065	178928076	+	inframe_deletion	In_Frame_Del	DEL	TACCTCATGGAT	TACCTCATGGAT	-			P-0026272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	66	653	1	ENST00000263967.3:c.1345_1356del	p.Pro449_Leu452del	p.P449_L452del	ENST00000263967	NM_006218.2	448	gTACCTCATGGATta/gta																																																																														
FAT1	0	MSKCC	GRCh37	4	187535354	187535354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	33	467	2	ENST00000441802.2:c.9220C>T	p.Pro3074Ser	p.P3074S	ENST00000441802	NM_005245.3	3074	Cca/Tca																																																																														
FAT1	0	MSKCC	GRCh37	4	187535413	187535413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	54	523	1	ENST00000441802.2:c.9161C>T	p.Ser3054Phe	p.S3054F	ENST00000441802	NM_005245.3	3054	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	63	514	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	17	580	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
GNAS	0	MSKCC	GRCh37	20	57480507	57480507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	18	438	0	ENST00000371085.3:c.502G>A	p.Glu168Lys	p.E168K	ENST00000371085	NM_000516.4	168	Gag/Aag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	73	606	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SPEN	0	MSKCC	GRCh37	1	16202846	16202846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	50	554	1	ENST00000375759.3:c.554C>A	p.Ala185Asp	p.A185D	ENST00000375759	NM_015001.2	185	gCt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	479	751	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0026277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	152	341	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
NTRK1	0	MSKCC	GRCh37	1	156841541	156841541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	385	717	2	ENST00000524377.1:c.844G>A	p.Val282Ile	p.V282I	ENST00000524377	NM_002529.3	282	Gtc/Atc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15935669	15935669	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	50	458	0	ENST00000268712.3:c.7264C>T	p.Arg2422Ter	p.R2422*	ENST00000268712	NM_006311.3	2422	Cga/Tga																																																																														
PREX2	0	MSKCC	GRCh37	8	68930087	68930087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	76	541	0	ENST00000288368.4:c.148T>G	p.Leu50Val	p.L50V	ENST00000288368	NM_024870.2	50	Tta/Gta																																																																														
EZH1	0	MSKCC	GRCh37	17	40872450	40872450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	34	661	0	ENST00000428826.2:c.505G>A	p.Val169Ile	p.V169I	ENST00000428826		169	Gtt/Att																																																																														
SOX9	0	MSKCC	GRCh37	17	70120347	70120347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	159	974	0	ENST00000245479.2:c.1349C>T	p.Ser450Phe	p.S450F	ENST00000245479	NM_000346.3	450	tCc/tTc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187398	38187398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	235	484	0	ENST00000317025.8:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000317025	NM_023034.1	360	cGa/cAa																																																																														
CIC	0	MSKCC	GRCh37	19	42796856	42796856	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	68	868	0	ENST00000575354.2:c.3314C>G	p.Ser1105Ter	p.S1105*	ENST00000575354	NM_015125.3	1105	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7579372	7579412	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGG	GCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGG	-			P-0026279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	188	779	0	ENST00000269305.4:c.275_315del	p.Pro92GlnfsTer43	p.P92Qfs*43	ENST00000269305	NM_001126112.2	92	cCCCTGTCATCTTCTGTCCCTTCCCAGAAAACCTACCAGGGC/c																																																																														
CIC	0	MSKCC	GRCh37	19	42795001	42795001	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	64	733	1	ENST00000575354.2:c.2081C>G	p.Ser694Cys	p.S694C	ENST00000575354	NM_015125.3	694	tCt/tGt																																																																														
CIC	0	MSKCC	GRCh37	19	42795752	42795752	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	67	817	1	ENST00000575354.2:c.2741C>G	p.Ser914Ter	p.S914*	ENST00000575354	NM_015125.3	914	tCa/tGa																																																																														
CIC	0	MSKCC	GRCh37	19	42795970	42796255	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGTCTTTTCTCCTTCTCCATGTATCTGGTTCTCTGTCTTGCCATCTTCCGTGATGTCTCTGTGCATCCTGACTCTCTCAAGTCCTCAGTGTCTGTACCCTCCTCCTTCTCTGTGTCCCCACCTCTCACTGTCATCTTGCCCATCCTGTTCTCACCCCAAGTTCTGTGTTCCTTGCTTTTGCTTAGAGTCCCACTTGAGGTCTTGGTCTTCCCCTGCCCCAGTCTGGGGCCACAGCTCACCCTGGCCTATGGGTGCCCTTCTCCACAGATCATCCAGCTGACCCCG	CAGTCTTTTCTCCTTCTCCATGTATCTGGTTCTCTGTCTTGCCATCTTCCGTGATGTCTCTGTGCATCCTGACTCTCTCAAGTCCTCAGTGTCTGTACCCTCCTCCTTCTCTGTGTCCCCACCTCTCACTGTCATCTTGCCCATCCTGTTCTCACCCCAAGTTCTGTGTTCCTTGCTTTTGCTTAGAGTCCCACTTGAGGTCTTGGTCTTCCCCTGCCCCAGTCTGGGGCCACAGCTCACCCTGGCCTATGGGTGCCCTTCTCCACAGATCATCCAGCTGACCCCG	-			P-0026279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	47	280	1	ENST00000575354.2:c.2886+73_2904del		p.X962_splice	ENST00000575354	NM_015125.3	962																																																																															
CIC	0	MSKCC	GRCh37	19	42796799	42796799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	72	768	0	ENST00000575354.2:c.3257C>G	p.Ala1086Gly	p.A1086G	ENST00000575354	NM_015125.3	1086	gCc/gGc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8501006	8501006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	26	517	0	ENST00000356435.5:c.1876A>G	p.Ile626Val	p.I626V	ENST00000356435		626	Att/Gtt																																																																														
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	449	935	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40682049	40682049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	141	600	3	ENST00000249776.8:c.604G>T	p.Asp202Tyr	p.D202Y	ENST00000249776	NM_033286.3	202	Gac/Tac																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967946	93967946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	101	573	0	ENST00000369303.4:c.1981G>T	p.Ala661Ser	p.A661S	ENST00000369303	NM_004440.3	661	Gca/Tca																																																																														
NUP93	0	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	146	538	1	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
STAT5B	0	MSKCC	GRCh37	17	40384097	40384097	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	96	705	0	ENST00000293328.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000293328	NM_012448.3	17	Cag/Tag																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182662947	182662947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	76	463	0	ENST00000292782.4:c.715C>T	p.Leu239Phe	p.L239F	ENST00000292782	NM_020640.2	239	Ctt/Ttt																																																																														
KIT	0	MSKCC	GRCh37	4	55593647	55593648	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACCCAACACAACTTCCT			P-0026342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	175	296	0	ENST00000288135.5:c.1714_1731dup	p.Asp572_Pro577dup	p.D572_P577dup	ENST00000288135	NM_000222.2	572	-/GACCCAACACAACTTCCT																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	277	441	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
KIT	0	MSKCC	GRCh37	4	55593604	55593609	+	inframe_deletion	In_Frame_Del	DEL	GGAAGG	GGAAGG	-			P-0026343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	153	269	0	ENST00000288135.5:c.1670_1675del	p.Trp557_Val559delinsPhe	p.W557_V559delinsF	ENST00000288135	NM_000222.2	557	tGGAAGGtt/ttt																																																																														
CDC73	0	MSKCC	GRCh37	1	193121522	193121522	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	19	207	0	ENST00000367435.3:c.920T>G	p.Phe307Cys	p.F307C	ENST00000367435	NM_024529.4	307	tTc/tGc																																																																														
RET	0	MSKCC	GRCh37	10	43600573	43600573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	13	283	0	ENST00000355710.3:c.799G>A	p.Asp267Asn	p.D267N	ENST00000355710	NM_020975.4	267	Gac/Aac																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0026349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	223	236	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593615	+	inframe_deletion	In_Frame_Del	DEL	AGTGGAAGGTTGTTG	AGTGGAAGGTTGTTG	-			P-0026349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	297	245	0	ENST00000288135.5:c.1669_1683del	p.Trp557_Glu561del	p.W557_E561del	ENST00000288135	NM_000222.2	556	cAGTGGAAGGTTGTTGag/cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	57	302	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25457243	25457243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	21	281	1	ENST00000264709.3:c.2644C>T	p.Arg882Cys	p.R882C	ENST00000264709	NM_175629.2	882	Cgc/Tgc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98218623	98218623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	37	247	1	ENST00000331920.6:c.3241G>A	p.Val1081Met	p.V1081M	ENST00000331920	NM_000264.3	1081	Gtg/Atg																																																																														
RB1	0	MSKCC	GRCh37	13	49030384	49030384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	35	253	0	ENST00000267163.4:c.1859C>T	p.Thr620Met	p.T620M	ENST00000267163	NM_000321.2	620	aCg/aTg																																																																														
CASP8	0	MSKCC	GRCh37	2	202136247	202136247	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	50	246	0	ENST00000358485.4:c.491T>A	p.Leu164His	p.L164H	ENST00000358485	NM_001080125.1	164	cTc/cAc																																																																														
STK40	0	MSKCC	GRCh37	1	36820829	36820829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	25	207	0	ENST00000373129.3:c.548G>A	p.Arg183His	p.R183H	ENST00000373129	NM_032017.1	183	cGc/cAc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41226539	41226539	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	37	228	0	ENST00000357654.3:c.4485-1G>A		p.X1495_splice	ENST00000357654	NM_007294.3	1495																																																																															
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	47	301	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43714131	43714131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	86	458	0	ENST00000382044.4:c.4022C>T	p.Pro1341Leu	p.P1341L	ENST00000382044	NM_001141980.1	1341	cCa/cTa																																																																														
XPO1	7514	MSKCC	GRCh37	2	61724108	61724109	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0026353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	41	263	0	ENST00000401558.2:c.793_794del	p.Leu265GlufsTer5	p.L265Efs*5	ENST00000401558	NM_003400.3	265	CTg/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	40	102	0				ENST00000310581	NM_198253.2																																																																																
HGF	0	MSKCC	GRCh37	7	81381516	81381516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	52	200	1	ENST00000222390.5:c.545G>A	p.Gly182Glu	p.G182E	ENST00000222390	NM_000601.4	182	gGg/gAg																																																																														
NF1	0	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	134	208	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566827	212566827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	61	213	0	ENST00000342788.4:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000342788	NM_005235.2	452	Gaa/Aaa																																																																														
NF2	0	MSKCC	GRCh37	22	30032793	30032794	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	135	212	0	ENST00000338641.4:c.168_169delinsTT	p.Arg57Ter	p.R57*	ENST00000338641	NM_000268.3	56	ctCCga/ctTTga																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310941	123310941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	70	213	0	ENST00000358487.5:c.487G>A	p.Glu163Lys	p.E163K	ENST00000358487	NM_000141.4	163	Gaa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8497265	8497265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	56	286	0	ENST00000356435.5:c.2326G>A	p.Glu776Lys	p.E776K	ENST00000356435		776	Gaa/Aaa																																																																														
NF1	0	MSKCC	GRCh37	17	29676137	29676137	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	111	182	0	ENST00000358273.4:c.7190-1G>A		p.X2397_splice	ENST00000358273	NM_001042492.2	2397																																																																															
CSDE1	0	MSKCC	GRCh37	1	115280672	115280672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1096	687	302	0	ENST00000438362.2:c.359C>T	p.Ser120Leu	p.S120L	ENST00000438362	NM_001242891.1	120	tCa/tTa																																																																														
MDM4	0	MSKCC	GRCh37	1	204518613	204518613	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	104	214	0	ENST00000367182.3:c.1276A>C	p.Asn426His	p.N426H	ENST00000367182	NM_001278516.1	426	Aac/Cac																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18649067	18649067	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	225	279	0	ENST00000266497.5:c.2742A>T	p.Lys914Asn	p.K914N	ENST00000266497		914	aaA/aaT																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9916241	9916241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	148	294	0	ENST00000330684.3:c.2048G>A	p.Gly683Glu	p.G683E	ENST00000330684	NM_001134407.1	683	gGg/gAg																																																																														
RAD51D	0	MSKCC	GRCh37	17	33430290	33430290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	221	371	0	ENST00000335858.7:c.385C>T	p.Leu129Phe	p.L129F	ENST00000335858	NM_133629.2	129	Ctt/Ttt																																																																														
CEBPA	0	MSKCC	GRCh37	19	33793224	33793224	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	22	24	0	ENST00000498907.2:c.97T>A	p.Phe33Ile	p.F33I	ENST00000498907	NM_004364.3	33	Ttt/Att																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212083	36212083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	118	406	0	ENST00000222270.7:c.1834A>G	p.Thr612Ala	p.T612A	ENST00000222270	NM_014727.1	612	Acc/Gcc																																																																														
SOS1	0	MSKCC	GRCh37	2	39250154	39250154	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	120	418	0	ENST00000402219.2:c.1415A>C	p.Lys472Thr	p.K472T	ENST00000402219	NM_005633.3	472	aAa/aCa																																																																														
APC	0	MSKCC	GRCh37	5	112174881	112174881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	124	215	0	ENST00000257430.4:c.3590T>C	p.Phe1197Ser	p.F1197S	ENST00000257430	NM_000038.5	1197	tTc/tCc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32168984	32168984	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	133	402	0	ENST00000375023.3:c.4049A>T	p.Lys1350Met	p.K1350M	ENST00000375023	NM_004557.3	1350	aAg/aTg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93964501	93964502	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	50	227	0	ENST00000369303.4:c.2395_2396delinsTT	p.Pro799Leu	p.P799L	ENST00000369303	NM_004440.3	799	CCa/TTa																																																																														
INHBA	0	MSKCC	GRCh37	7	41729683	41729683	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	67	317	0	ENST00000242208.4:c.846T>G	p.Asp282Glu	p.D282E	ENST00000242208	NM_002192.2	282	gaT/gaG																																																																														
PAX5	0	MSKCC	GRCh37	9	37002692	37002693	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	170	275	1	ENST00000358127.4:c.556_557delinsAA	p.Gly186Asn	p.G186N	ENST00000358127	NM_001280556.1	186	GGc/AAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832553	72832569	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCCGCTTTGCTCTGT	TCTCCGCTTTGCTCTGT	C			P-0026354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	41	205	0	ENST00000268489.5:c.4012_4028delinsG	p.Thr1338ValfsTer2	p.T1338Vfs*2	ENST00000268489	NM_006885.3	1338	ACAGAGCAAAGCGGAGAt/Gt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	124	311	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																														
BLM	0	MSKCC	GRCh37	15	91341543	91341543	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	103	348	0	ENST00000355112.3:c.3334A>C	p.Asn1112His	p.N1112H	ENST00000355112	NM_000057.2	1112	Aat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	40	700	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	36	562	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	55	449	2	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023310	27023365	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCGGCCGCCTTGCCGCCCCCAGCCTACGGCTTCGGGCAACCCTACGGCCGGAGC	CCGCGGCCGCCTTGCCGCCCCCAGCCTACGGCTTCGGGCAACCCTACGGCCGGAGC	-			P-0026397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	22	303	1	ENST00000324856.7:c.419_474del	p.Ala140ValfsTer241	p.A140Vfs*241	ENST00000324856	NM_006015.4	139	gCCGCGGCCGCCTTGCCGCCCCCAGCCTACGGCTTCGGGCAACCCTACGGCCGGAGC/g																																																																														
LATS2	0	MSKCC	GRCh37	13	21563192	21563192	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	118	793	0	ENST00000382592.4:c.727G>C	p.Gly243Arg	p.G243R	ENST00000382592	NM_014572.2	243	Ggg/Cgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	268	758	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112175057	112175057	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	113	303	0	ENST00000257430.4:c.3766C>T	p.Gln1256Ter	p.Q1256*	ENST00000257430	NM_000038.5	1256	Caa/Taa																																																																														
ETV1	0	MSKCC	GRCh37	7	13975444	13975444	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	258	511	0	ENST00000405192.2:c.443T>C	p.Leu148Pro	p.L148P	ENST00000405192	NM_001163147.1	148	cTg/cCg																																																																														
INHBA	0	MSKCC	GRCh37	7	41729609	41729609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	288	613	1	ENST00000242208.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000242208	NM_002192.2	307	cGg/cAg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	162	775	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc																																																																														
TAP1	0	MSKCC	GRCh37	6	32821485	32821485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	97	762	1	ENST00000354258.4:c.109C>T	p.Arg37Trp	p.R37W	ENST00000354258	NM_000593.5	37	Cgg/Tgg																																																																														
MYC	0	MSKCC	GRCh37	8	128752989	128752989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	121	549	0	ENST00000377970.2:c.1150G>C	p.Glu384Gln	p.E384Q	ENST00000377970	NM_002467.4	384	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	40	580	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	61	537	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	61	537	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	61	537	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980527	1980527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	49	698	0	ENST00000382891.5:c.3989C>T	p.Ala1330Val	p.A1330V	ENST00000382891	NM_133335.3	1330	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577090	7577090	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TGCGT			P-0026407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	289	677	0	ENST00000269305.4:c.848delinsACGCA	p.Arg283HisfsTer24	p.R283Hfs*24	ENST00000269305	NM_001126112.2	283	cGc/cACGCAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952117	178952117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	318	522	0	ENST00000263967.3:c.3172A>C	p.Ile1058Leu	p.I1058L	ENST00000263967	NM_006218.2	1058	Atc/Ctc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0026409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	300	595	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0026409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	143	339	4	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	310	275	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																														
PTEN	0	MSKCC	GRCh37	10	89717661	89717675	+	inframe_deletion	In_Frame_Del	DEL	CAGGACCCACACGAC	CAGGACCCACACGAC	-			P-0026409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	242	754	0	ENST00000371953.3:c.686_700del	p.Ser229_Arg234delinsTrp	p.S229_R234delinsW	ENST00000371953	NM_000314.4	229	tCAGGACCCACACGACgg/tgg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	31	230	0	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0026410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	225	535	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																														
RASA1	0	MSKCC	GRCh37	5	86637111	86637111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	67	405	0	ENST00000274376.6:c.1022G>A	p.Arg341Gln	p.R341Q	ENST00000274376	NM_002890.2	341	cGg/cAg																																																																														
BLM	0	MSKCC	GRCh37	15	91292740	91292740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1292	117	672	0	ENST00000355112.3:c.242C>A	p.Thr81Lys	p.T81K	ENST00000355112	NM_000057.2	81	aCa/aAa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858369	9858369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	67	496	0	ENST00000330684.3:c.3032G>A	p.Arg1011Gln	p.R1011Q	ENST00000330684	NM_001134407.1	1011	cGg/cAg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735532	40735532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	99	621	0	ENST00000373198.4:c.3341T>G	p.Ile1114Ser	p.I1114S	ENST00000373198	NM_133170.3	1114	aTt/aGt																																																																														
EGFR	0	MSKCC	GRCh37	7	55229273	55229273	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150477666		P-0026410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1218	113	690	0	ENST00000275493.2:c.1580G>A	p.Arg527Gln	p.R527Q	ENST00000275493	NM_005228.3	527	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	56	584	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	30	652	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165653	118165653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	65	478	0	ENST00000369448.3:c.163G>A	p.Val55Ile	p.V55I	ENST00000369448	NM_017709.3	55	Gtc/Atc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	222	619	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
CIC	0	MSKCC	GRCh37	19	42791320	42791320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	97	768	3	ENST00000575354.2:c.380C>T	p.Thr127Met	p.T127M	ENST00000575354	NM_015125.3	127	aCg/aTg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	95	475	1	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
GLI1	0	MSKCC	GRCh37	12	57860053	57860053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200444628		P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	404	877	4	ENST00000228682.2:c.793C>T	p.Arg265Trp	p.R265W	ENST00000228682	NM_005269.2	265	Cgg/Tgg																																																																														
FLCN	0	MSKCC	GRCh37	17	17119796	17119796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	71	708	0	ENST00000285071.4:c.1198G>A	p.Val400Ile	p.V400I	ENST00000285071	NM_144997.5	400	Gtc/Atc																																																																														
ATRX	0	MSKCC	GRCh37	X	76874316	76874316	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	244	730	0	ENST00000373344.5:c.5406del	p.Lys1802AsnfsTer10	p.K1802Nfs*10	ENST00000373344	NM_000489.3	1802	aaA/aa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	94	883	0	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264348	46264348	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	80	505	1	ENST00000371998.3:c.1400delC	p.Pro467HisfsTer15	p.P467Hfs*15	ENST00000371998		465	agC/ag																																																																														
INPPL1	0	MSKCC	GRCh37	11	71941430	71941430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	98	764	1	ENST00000298229.2:c.1115G>A	p.Arg372His	p.R372H	ENST00000298229	NM_001567.3	372	cGt/cAt																																																																														
U2AF1	0	MSKCC	GRCh37	21	44514781	44514781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	79	570	0	ENST00000291552.4:c.466C>T	p.Arg156Cys	p.R156C	ENST00000291552	NM_006758.2	156	Cgt/Tgt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	111	857	3	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224124	36224124	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	91	652	0	ENST00000222270.7:c.6678delC	p.Thr2227ArgfsTer34	p.T2227Rfs*34	ENST00000222270	NM_014727.1	2225	tCc/tc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	99	797	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435199	49435199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	218	451	1	ENST00000301067.7:c.6354delC	p.Ala2119LeufsTer25	p.A2119Lfs*25	ENST00000301067	NM_003482.3	2118	ccC/cc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27059207	27059207	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	104	606	0	ENST00000324856.7:c.1848delC	p.Ser617GlnfsTer2	p.S617Qfs*2	ENST00000324856	NM_006015.4	615	gCc/gc																																																																														
POLD1	0	MSKCC	GRCh37	19	50906394	50906394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	325	774	1	ENST00000440232.2:c.1055G>A	p.Arg352His	p.R352H	ENST00000440232	NM_002691.3	352	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	84	696	2	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741528	17741528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	61	455	0	ENST00000250003.3:c.199G>A	p.Ala67Thr	p.A67T	ENST00000250003	NM_002478.4	67	Gcg/Acg																																																																														
KDM5A	0	MSKCC	GRCh37	12	419118	419118	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	33	355	0	ENST00000399788.2:c.3229del	p.Arg1077GlyfsTer17	p.R1077Gfs*17	ENST00000399788	NM_001042603.1	1077	Cgg/gg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30066817	30066817	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	48	675	0	ENST00000331968.5:c.2314A>G	p.Ile772Val	p.I772V	ENST00000331968	NM_002742.2	772	Atc/Gtc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061594	38061594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	67	182	0	ENST00000250448.2:c.395C>T	p.Ala132Val	p.A132V	ENST00000250448	NM_004496.3	132	gCc/gTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274043	10274043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	134	813	3	ENST00000330684.3:c.226C>T	p.Arg76Cys	p.R76C	ENST00000330684	NM_001134407.1	76	Cgc/Tgc																																																																														
PALB2	0	MSKCC	GRCh37	16	23614793	23614793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	69	513	1	ENST00000261584.4:c.3548A>G	p.Tyr1183Cys	p.Y1183C	ENST00000261584	NM_024675.3	1183	tAc/tGc																																																																														
JAK3	0	MSKCC	GRCh37	19	17937701	17937701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	67	518	0	ENST00000458235.1:c.3226C>A	p.Leu1076Met	p.L1076M	ENST00000458235	NM_000215.3	1076	Ctg/Atg																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792348	33792348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	63	762	2	ENST00000498907.2:c.973C>T	p.Arg325Cys	p.R325C	ENST00000498907	NM_004364.3	325	Cgc/Tgc																																																																														
POLD1	0	MSKCC	GRCh37	19	50905736	50905736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	119	808	0	ENST00000440232.2:c.784G>A	p.Gly262Ser	p.G262S	ENST00000440232	NM_002691.3	262	Ggc/Agc																																																																														
ACVR1	0	MSKCC	GRCh37	2	158595029	158595029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	60	552	0	ENST00000263640.3:c.1318A>G	p.Ser440Gly	p.S440G	ENST00000263640	NM_001105.4	440	Agt/Ggt																																																																														
IRS1	0	MSKCC	GRCh37	2	227661972	227661972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	115	622	0	ENST00000305123.5:c.1483A>G	p.Thr495Ala	p.T495A	ENST00000305123	NM_005544.2	495	Acc/Gcc																																																																														
EP300	0	MSKCC	GRCh37	22	41574665	41574665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	114	837	6	ENST00000263253.7:c.6950G>T	p.Arg2317Leu	p.R2317L	ENST00000263253	NM_001429.3	2317	cGg/cTg																																																																														
MLH1	0	MSKCC	GRCh37	3	37038115	37038115	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	144	279	0	ENST00000231790.2:c.122A>T	p.Asp41Val	p.D41V	ENST00000231790	NM_000249.3	41	gAt/gTt																																																																														
FAT1	0	MSKCC	GRCh37	4	187629115	187629115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	221	653	0	ENST00000441802.2:c.1867del	p.Val623TyrfsTer4	p.V623Yfs*4	ENST00000441802	NM_005245.3	623	Gta/ta																																																																														
TERT	0	MSKCC	GRCh37	5	1294361	1294361	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	468	538	0	ENST00000310581.5:c.640del	p.Leu214TrpfsTer137	p.L214Wfs*137	ENST00000310581	NM_198253.2	214	Ctg/tg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468044	50468044	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	226	548	0	ENST00000331340.3:c.1279T>A	p.Ser427Thr	p.S427T	ENST00000331340	NM_006060.4	427	Tcg/Acg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981408	70981408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	758	776	0	ENST00000276594.2:c.688C>T	p.Pro230Ser	p.P230S	ENST00000276594	NM_024504.3	230	Cca/Tca																																																																														
RXRA	0	MSKCC	GRCh37	9	137300812	137300812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	79	702	0	ENST00000481739.1:c.457G>A	p.Glu153Lys	p.E153K	ENST00000481739	NM_002957.4	153	Gag/Aag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412700	139412700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	373	815	0	ENST00000277541.6:c.1144A>G	p.Asn382Asp	p.N382D	ENST00000277541	NM_017617.3	382	Aac/Gac																																																																														
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	663	688	1	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916928	178916939	+	inframe_deletion	In_Frame_Del	DEL	AGGCAACCGTGA	AGGCAACCGTGA	-			P-0026447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	140	535	0	ENST00000263967.3:c.317_328del	p.Gly106_Glu109del	p.G106_E109del	ENST00000263967	NM_006218.2	105	gtAGGCAACCGTGAa/gta																																																																														
PTEN	0	MSKCC	GRCh37	10	89720812	89720813	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0026447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	98	264	0	ENST00000371953.3:c.967_968del	p.Asn323Ter	p.N323*	ENST00000371953	NM_000314.4	321	acAAaa/acaa																																																																														
APC	0	MSKCC	GRCh37	5	112175888	112175895	+	frameshift_variant	Frame_Shift_Del	DEL	AATGGGAA	AATGGGAA	-			P-0026447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	213	326	0	ENST00000257430.4:c.4597_4604del	p.Asn1533Ter	p.N1533*	ENST00000257430	NM_000038.5	1533	AATGGGAAt/t																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240995	53240995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	213	285	0	ENST00000375401.3:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000375401	NM_004187.3	406	Gct/Act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0026470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	34	511	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	593	673	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC																																																																														
BBC3	0	MSKCC	GRCh37	19	47725019	47725019	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1293	284	696	4	ENST00000449228.1:c.725del	p.Gly242AlafsTer48	p.G242Afs*48	ENST00000449228	NM_001127240.2	242	gGc/gc																																																																														
CDC42	0	MSKCC	GRCh37	1	22417957	22417957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	103	179	0	ENST00000344548.3:c.523G>T	p.Ala175Ser	p.A175S	ENST00000344548	NM_001039802.1	175	Gct/Tct																																																																														
ATM	0	MSKCC	GRCh37	11	108218087	108218087	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	214	477	0	ENST00000278616.4:c.8666A>T	p.Asp2889Val	p.D2889V	ENST00000278616	NM_000051.3	2889	gAt/gTt																																																																														
GLI1	0	MSKCC	GRCh37	12	57858914	57858914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	604	737	0	ENST00000228682.2:c.410C>G	p.Ala137Gly	p.A137G	ENST00000228682	NM_005269.2	137	gCc/gGc																																																																														
RB1	0	MSKCC	GRCh37	13	48954215	48954215	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	213	296	0	ENST00000267163.4:c.1419del	p.Phe473LeufsTer5	p.F473Lfs*5	ENST00000267163	NM_000321.2	472	aaT/aa																																																																														
SLX4	0	MSKCC	GRCh37	16	3640593	3640594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	384	818	0	ENST00000294008.3:c.3045dup	p.Leu1016AlafsTer78	p.L1016Afs*78	ENST00000294008	NM_032444.2	1015	-/G																																																																														
CDH1	0	MSKCC	GRCh37	16	68857367	68857367	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0026471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	269	663	1	ENST00000261769.5:c.2002A>T	p.Lys668Ter	p.K668*	ENST00000261769	NM_004360.3	668	Aag/Tag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900369	3900370	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0026471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	502	629	0	ENST00000262367.5:c.726_727delinsG	p.Leu243Ter	p.L243*	ENST00000262367	NM_004380.2	242	acCCta/acGta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	224	575	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	343	679	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	238	431	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	122	410	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112154771	112154771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	160	458	3	ENST00000257430.4:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000257430	NM_000038.5	348	Cga/Tga																																																																														
RBM10	0	MSKCC	GRCh37	X	47038756	47038756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	128	634	1	ENST00000329236.7:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000329236	NM_001204466.1	178	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89692802	89692802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	150	290	0	ENST00000371953.3:c.286C>A	p.Pro96Thr	p.P96T	ENST00000371953	NM_000314.4	96	Cca/Aca																																																																														
SMAD3	0	MSKCC	GRCh37	15	67479807	67479807	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	113	533	1	ENST00000327367.4:c.1114A>T	p.Ile372Phe	p.I372F	ENST00000327367	NM_005902.3	372	Atc/Ttc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67522720	67522721	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0026473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	214	305	1	ENST00000274335.5:c.218dup	p.Tyr73Ter	p.Y73*	ENST00000274335		73	tac/tAac																																																																														
TP53	0	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	203	684	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158464	26158464	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	174	621	0	ENST00000289316.2:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000289316	NM_138720.2	23	Cag/Tag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120468219	120468219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	116	664	0	ENST00000256646.2:c.4220C>T	p.Ser1407Leu	p.S1407L	ENST00000256646	NM_024408.3	1407	tCg/tTg																																																																														
CSDE1	0	MSKCC	GRCh37	1	115262275	115262275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	186	594	0	ENST00000438362.2:c.2279G>T	p.Gly760Val	p.G760V	ENST00000438362	NM_001242891.1	760	gGa/gTa																																																																														
ARID2	0	MSKCC	GRCh37	12	46230646	46230646	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	141	463	2	ENST00000334344.6:c.895G>T	p.Glu299Ter	p.E299*	ENST00000334344	NM_152641.2	299	Gag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49422666	49422666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	197	720	1	ENST00000301067.7:c.14327del	p.Lys4776ArgfsTer21	p.K4776Rfs*21	ENST00000301067	NM_003482.3	4776	aAg/ag																																																																														
PTPN11	0	MSKCC	GRCh37	12	112884188	112884188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	184	597	0	ENST00000351677.2:c.123C>G	p.Phe41Leu	p.F41L	ENST00000351677	NM_002834.3	41	ttC/ttG																																																																														
EPHB1	0	MSKCC	GRCh37	3	134825430	134825430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	169	523	2	ENST00000398015.3:c.946G>A	p.Glu316Lys	p.E316K	ENST00000398015	NM_004441.4	316	Gaa/Aaa																																																																														
E2F3	0	MSKCC	GRCh37	6	20483135	20483135	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	134	430	0	ENST00000346618.3:c.868G>C	p.Asp290His	p.D290H	ENST00000346618	NM_001949.4	290	Gat/Cat																																																																														
PARK2	0	MSKCC	GRCh37	6	162683595	162683595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	118	461	0	ENST00000366898.1:c.374C>A	p.Thr125Asn	p.T125N	ENST00000366898	NM_004562.2	125	aCt/aAt																																																																														
XIAP	0	MSKCC	GRCh37	X	123034436	123034436	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	53	591	0	ENST00000355640.3:c.1193A>G	p.Gln398Arg	p.Q398R	ENST00000355640		398	cAg/cGg																																																																														
FAM58A	0	MSKCC	GRCh37	X	152864447	152864447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	34	176	0	ENST00000406277.2:c.79C>G	p.Arg27Gly	p.R27G	ENST00000406277	NM_152274.4	27	Cga/Gga																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	143	654	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0026477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	252	433	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	162	474	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CDK12	0	MSKCC	GRCh37	17	37618899	37618899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	119	677	1	ENST00000447079.4:c.575C>T	p.Ser192Phe	p.S192F	ENST00000447079	NM_015083.1	192	tCt/tTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087939	27087940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAATCAA			P-0026478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	195	677	0	ENST00000324856.7:c.2227_2233dup	p.Ser745ThrfsTer74	p.S745Tfs*74	ENST00000324856	NM_006015.4	742	-/CAATCAA																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106285	27106331	+	frameshift_variant	Frame_Shift_Del	DEL	CCACTGTGTACCCTTCTGGACTGGCAGGATTCTCTTGCCAAGCGCTG	CCACTGTGTACCCTTCTGGACTGGCAGGATTCTCTTGCCAAGCGCTG	-			P-0026478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	79	676	0	ENST00000324856.7:c.5897_5943del	p.Pro1966ArgfsTer17	p.P1966Rfs*17	ENST00000324856	NM_006015.4	1966	CCACTGTGTACCCTTCTGGACTGGCAGGATTCTCTTGCCAAGCGCTGc/c																																																																														
ATM	0	MSKCC	GRCh37	11	108216546	108216546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	81	421	1	ENST00000278616.4:c.8495G>T	p.Arg2832Leu	p.R2832L	ENST00000278616	NM_000051.3	2832	cGt/cTt																																																																														
DICER1	0	MSKCC	GRCh37	14	95569750	95569750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	82	305	0	ENST00000343455.3:c.3983C>T	p.Thr1328Ile	p.T1328I	ENST00000343455	NM_177438.2	1328	aCc/aTc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2223817	2223817	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	253	747	0	ENST00000326181.6:c.1115T>G	p.Leu372Arg	p.L372R	ENST00000326181	NM_032271.2	372	cTg/cGg																																																																														
TET2	0	MSKCC	GRCh37	4	106194031	106194031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	130	406	0	ENST00000380013.4:c.4493G>A	p.Arg1498His	p.R1498H	ENST00000380013	NM_001127208.2	1498	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	58	522	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	81	277	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	108	440	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	77	333	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	69	417	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	109	460	3	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
B2M	0	MSKCC	GRCh37	15	45007834	45007834	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	66	455	0	ENST00000558401.1:c.285delA	p.Asp96MetfsTer7	p.D96Mfs*7	ENST00000558401	NM_004048.2	94	gAa/ga																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	27	146	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	255	689	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	199	647	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022442	31022443	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	59	232	0	ENST00000375687.4:c.1933_1934del	p.Gly645TrpfsTer12	p.G645Wfs*12	ENST00000375687	NM_015338.5	643	GGg/g																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	135	519	0	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																														
BRD4	0	MSKCC	GRCh37	19	15354008	15354008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	39	193	3	ENST00000263377.2:c.2872del	p.Leu958CysfsTer110	p.L958Cfs*110	ENST00000263377	NM_058243.2	958	Ctg/tg																																																																														
DDR2	0	MSKCC	GRCh37	1	162724626	162724626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	128	435	0	ENST00000367921.3:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000367921	NM_006182.2	133	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	66	415	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	159	548	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																														
FLT1	0	MSKCC	GRCh37	13	28964077	28964077	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	41	439	0	ENST00000282397.4:c.1825del	p.Met609TrpfsTer16	p.M609Wfs*16	ENST00000282397	NM_002019.4	609	Atg/tg																																																																														
TSC1	0	MSKCC	GRCh37	9	135781141	135781141	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	137	550	2	ENST00000298552.3:c.1824del	p.Phe608LeufsTer21	p.F608Lfs*21	ENST00000298552	NM_001162426.1	608	ttT/tt																																																																														
PTEN	0	MSKCC	GRCh37	10	89690848	89690848	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	36	351	0	ENST00000371953.3:c.253+2T>C		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
CASP8	0	MSKCC	GRCh37	2	202149634	202149635	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	114	466	0	ENST00000358485.4:c.1077dup	p.Leu360ThrfsTer6	p.L360Tfs*6	ENST00000358485	NM_001080125.1	359	caa/cAaa																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	34	50	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																														
MYC	0	MSKCC	GRCh37	8	128750681	128750681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	165	547	0	ENST00000377970.2:c.218C>T	p.Thr73Ile	p.T73I	ENST00000377970	NM_002467.4	73	aCc/aTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412266	139412266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	247	679	0	ENST00000277541.6:c.1379C>T	p.Pro460Leu	p.P460L	ENST00000277541	NM_017617.3	460	cCg/cTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212403	5212403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	169	685	3	ENST00000357368.4:c.4714C>T	p.Arg1572Trp	p.R1572W	ENST00000357368	NM_002850.3	1572	Cgg/Tgg																																																																														
TET2	0	MSKCC	GRCh37	4	106156729	106156729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	199	400	1	ENST00000380013.4:c.1630C>T	p.Arg544Ter	p.R544*	ENST00000380013	NM_001127208.2	544	Cga/Tga																																																																														
ATR	0	MSKCC	GRCh37	3	142204114	142204114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	57	521	1	ENST00000350721.4:c.6089C>T	p.Ala2030Val	p.A2030V	ENST00000350721	NM_001184.3	2030	gCg/gTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830204	72830204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	79	381	0	ENST00000268489.5:c.6377C>T	p.Ala2126Val	p.A2126V	ENST00000268489	NM_006885.3	2126	gCg/gTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10270726	10270726	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	157	491	2	ENST00000340748.4:c.1009del	p.Met337TrpfsTer8	p.M337Wfs*8	ENST00000340748		337	Atg/tg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	61	332	2	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	62	414	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	195	666	2	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	324	645	4	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																														
IRS2	0	MSKCC	GRCh37	13	110434972	110434973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	198	662	2	ENST00000375856.3:c.3428dup	p.Arg1144ProfsTer181	p.R1144Pfs*181	ENST00000375856	NM_003749.2	1143	ggc/ggGc																																																																														
CDK12	0	MSKCC	GRCh37	17	37680930	37680930	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	46	343	0	ENST00000447079.4:c.3103delC	p.His1035ThrfsTer22	p.H1035Tfs*22	ENST00000447079	NM_015083.1	1033	ctC/ct																																																																														
TP53	0	MSKCC	GRCh37	17	7573966	7573966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	95	643	0	ENST00000269305.4:c.1061A>G	p.Gln354Arg	p.Q354R	ENST00000269305	NM_001126112.2	354	cAg/cGg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214728	36214728	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	77	402	1	ENST00000222270.7:c.3159del	p.Arg1055GlyfsTer127	p.R1055Gfs*127	ENST00000222270	NM_014727.1	1052	Ggg/gg																																																																														
RBM10	0	MSKCC	GRCh37	X	47030582	47030582	+	intron_variant	Intron	SNP	G	G	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	165	311	4	ENST00000329236.7:c.201+1685G>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
PBRM1	0	MSKCC	GRCh37	3	52620657	52620657	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	92	393	0	ENST00000394830.3:c.3096del	p.Phe1032LeufsTer102	p.F1032Lfs*102	ENST00000394830	NM_018313.4	1032	ttT/tt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717719	89717720	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	133	404	0	ENST00000371953.3:c.750_751del	p.Cys250TrpfsTer2	p.C250Wfs*2	ENST00000371953	NM_000314.4	248	ccTGtg/cctg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778549	3778549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	203	597	0	ENST00000262367.5:c.6499del	p.Gln2167ArgfsTer5	p.Q2167Rfs*5	ENST00000262367	NM_004380.2	2167	Cag/ag																																																																														
PGR	0	MSKCC	GRCh37	11	100998275	100998275	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	52	226	0	ENST00000325455.5:c.1527del	p.Ala510ArgfsTer36	p.A510Rfs*36	ENST00000325455	NM_001202474.3	509	ccC/cc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602745	10602745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	92	663	2	ENST00000171111.5:c.833C>T	p.Pro278Leu	p.P278L	ENST00000171111	NM_203500.1	278	cCg/cTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11294297	11294297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	163	524	0	ENST00000361445.4:c.2234G>T	p.Gly745Val	p.G745V	ENST00000361445	NM_004958.3	745	gGg/gTg																																																																														
ID3	0	MSKCC	GRCh37	1	23885719	23885719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	158	546	0	ENST00000374561.5:c.199G>C	p.Val67Leu	p.V67L	ENST00000374561	NM_002167.4	67	Gtg/Ctg																																																																														
NRAS	0	MSKCC	GRCh37	1	115256455	115256455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	143	484	0	ENST00000369535.4:c.256A>G	p.Asn86Asp	p.N86D	ENST00000369535	NM_002524.4	86	Aat/Gat																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458973	120458973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	97	622	0	ENST00000256646.2:c.6372G>T	p.Lys2124Asn	p.K2124N	ENST00000256646	NM_024408.3	2124	aaG/aaT																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054993	176054993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	113	615	0	ENST00000367669.3:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000367669	NM_022457.5	354	Gca/Aca																																																																														
AKT3	0	MSKCC	GRCh37	1	243727061	243727061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	77	477	0	ENST00000263826.5:c.909G>A	p.Met303Ile	p.M303I	ENST00000263826	NM_005465.4	303	atG/atA																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852409	63852409	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	210	509	0	ENST00000279873.7:c.3191del	p.Gly1064AlafsTer43	p.G1064Afs*43	ENST00000279873	NM_032199.2	1063	Ggg/gg																																																																														
TET1	0	MSKCC	GRCh37	10	70405601	70405601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	194	504	0	ENST00000373644.4:c.3115C>T	p.Pro1039Ser	p.P1039S	ENST00000373644	NM_030625.2	1039	Cca/Tca																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64129438	64129438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	198	671	3	ENST00000334205.4:c.874del	p.Ala292HisfsTer83	p.A292Hfs*83	ENST00000334205	NM_003942.2	290	caG/ca																																																																														
BIRC3	0	MSKCC	GRCh37	11	102201754	102201754	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	30	434	0	ENST00000263464.3:c.1106A>G	p.Asp369Gly	p.D369G	ENST00000263464	NM_001165.4	369	gAc/gGc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431249	49431249	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	58	500	0	ENST00000301067.7:c.9890T>C	p.Leu3297Ser	p.L3297S	ENST00000301067	NM_003482.3	3297	tTg/tCg																																																																														
FLT1	0	MSKCC	GRCh37	13	28897047	28897047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	44	418	3	ENST00000282397.4:c.2833del	p.Met945TrpfsTer13	p.M945Wfs*13	ENST00000282397	NM_002019.4	945	Atg/tg																																																																														
B2M	0	MSKCC	GRCh37	15	45007719	45007720	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	195	373	2	ENST00000558401.1:c.168dup	p.Val57SerfsTer2	p.V57Sfs*2	ENST00000558401	NM_004048.2	56	gaa/gAaa																																																																														
CD276	0	MSKCC	GRCh37	15	73991987	73991987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	53	511	0	ENST00000318443.5:c.7C>T	p.Arg3Cys	p.R3C	ENST00000318443	NM_001024736.1	3	Cgt/Tgt																																																																														
SLX4	0	MSKCC	GRCh37	16	3647641	3647641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	187	640	0	ENST00000294008.3:c.1422G>T	p.Gln474His	p.Q474H	ENST00000294008	NM_032444.2	474	caG/caT																																																																														
CDH1	0	MSKCC	GRCh37	16	68853329	68853329	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	49	515	0	ENST00000261769.5:c.1711+1G>A		p.X571_splice	ENST00000261769	NM_004360.3	571																																																																															
CDH1	0	MSKCC	GRCh37	16	68867346	68867347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	258	449	0	ENST00000261769.5:c.2597dup	p.Asn867GlnfsTer8	p.N867Qfs*8	ENST00000261769	NM_004360.3	865	tgg/tGgg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881619	37881619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	190	613	1	ENST00000269571.5:c.2689C>T	p.Arg897Trp	p.R897W	ENST00000269571		897	Cgg/Tgg																																																																														
STAT5B	0	MSKCC	GRCh37	17	40364151	40364151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	53	265	0	ENST00000293328.3:c.1531C>T	p.Leu511Phe	p.L511F	ENST00000293328	NM_012448.3	511	Ctc/Ttc																																																																														
EZH1	0	MSKCC	GRCh37	17	40864314	40864314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	50	468	0	ENST00000428826.2:c.1394G>A	p.Cys465Tyr	p.C465Y	ENST00000428826		465	tGc/tAc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243466	41243466	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	162	567	0	ENST00000357654.3:c.4082T>C	p.Met1361Thr	p.M1361T	ENST00000357654	NM_007294.3	1361	aTg/aCg																																																																														
RAD51C	0	MSKCC	GRCh37	17	56774173	56774173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	180	501	0	ENST00000337432.4:c.524C>T	p.Ala175Val	p.A175V	ENST00000337432	NM_058216.2	175	gCc/gTc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58677989	58677989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	65	224	0	ENST00000305921.3:c.214G>A	p.Ala72Thr	p.A72T	ENST00000305921	NM_003620.3	72	Gcc/Acc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39647427	39647427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	75	495	1	ENST00000262039.4:c.2599G>A	p.Val867Ile	p.V867I	ENST00000262039	NM_002647.2	867	Gtc/Atc																																																																														
STK11	0	MSKCC	GRCh37	19	1223024	1223024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	166	612	0	ENST00000326873.7:c.961C>T	p.Pro321Ser	p.P321S	ENST00000326873	NM_000455.4	321	Ccc/Tcc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4117481	4117481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142271248		P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	177	360	0	ENST00000262948.5:c.239C>T	p.Ala80Val	p.A80V	ENST00000262948	NM_030662.3	80	gCg/gTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5231341	5231341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	46	559	0	ENST00000357368.4:c.2135T>C	p.Val712Ala	p.V712A	ENST00000357368	NM_002850.3	712	gTc/gCc																																																																														
BRD4	0	MSKCC	GRCh37	19	15349778	15349778	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199833114		P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	166	596	1	ENST00000263377.2:c.3796G>A	p.Glu1266Lys	p.E1266K	ENST00000263377	NM_058243.2	1266	Gag/Aag																																																																														
POLD1	0	MSKCC	GRCh37	19	50905182	50905182	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	223	707	0	ENST00000440232.2:c.463+1G>A		p.X155_splice	ENST00000440232	NM_002691.3	155																																																																															
SOS1	0	MSKCC	GRCh37	2	39250173	39250173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	71	666	0	ENST00000402219.2:c.1396G>A	p.Gly466Ser	p.G466S	ENST00000402219	NM_005633.3	466	Ggc/Agc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46583903	46583903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	161	573	1	ENST00000263734.3:c.410C>A	p.Pro137His	p.P137H	ENST00000263734	NM_001430.4	137	cCc/cAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385209	41385209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	53	587	0	ENST00000373198.4:c.752C>T	p.Thr251Ile	p.T251I	ENST00000373198	NM_133170.3	251	aCa/aTa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46281255	46281255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	136	433	0	ENST00000371998.3:c.4052C>A	p.Pro1351Gln	p.P1351Q	ENST00000371998		1351	cCg/cAg																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45655328	45655328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1227	120	750	0	ENST00000407780.3:c.524C>T	p.Thr175Met	p.T175M	ENST00000407780	NM_001283052.1	175	aCg/aTg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732946	30732946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	48	265	0	ENST00000359013.4:c.1634G>A	p.Cys545Tyr	p.C545Y	ENST00000359013	NM_001024847.2	545	tGc/tAc																																																																														
MLH1	0	MSKCC	GRCh37	3	37061907	37061907	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	364	409	0	ENST00000231790.2:c.991G>T	p.Glu331Ter	p.E331*	ENST00000231790	NM_000249.3	331	Gag/Tag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265882	41266241	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAG	CTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAG	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	10	25	0	ENST00000349496.5:c.14-132_241del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
CTNNB1	0	MSKCC	GRCh37	3	41267044	41267044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	54	412	0	ENST00000349496.5:c.715G>A	p.Ala239Thr	p.A239T	ENST00000349496	NM_001904.3	239	Gcc/Acc																																																																														
GSK3B	0	MSKCC	GRCh37	3	119545639	119545639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	119	339	0	ENST00000316626.5:c.1298C>T	p.Thr433Ile	p.T433I	ENST00000316626		433	aCc/aTc																																																																														
ATR	0	MSKCC	GRCh37	3	142188297	142188297	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	121	494	0	ENST00000350721.4:c.6434T>C	p.Leu2145Ser	p.L2145S	ENST00000350721	NM_001184.3	2145	tTg/tCg																																																																														
ATR	0	MSKCC	GRCh37	3	142268428	142268431	+	frameshift_variant	Frame_Shift_Del	DEL	TTAA	TTAA	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	193	458	0	ENST00000350721.4:c.3061_3064del	p.Leu1021MetfsTer8	p.L1021Mfs*8	ENST00000350721	NM_001184.3	1021	TTAAat/at																																																																														
KDR	0	MSKCC	GRCh37	4	55981462	55981462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	42	453	0	ENST00000263923.4:c.475G>C	p.Val159Leu	p.V159L	ENST00000263923	NM_002253.2	159	Gtg/Ctg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332916	153332916	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	44	361	0	ENST00000281708.4:c.40C>T	p.Arg14Ter	p.R14*	ENST00000281708	NM_033632.3	14	Cga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187629828	187629828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	298	647	1	ENST00000441802.2:c.1154C>A	p.Pro385His	p.P385H	ENST00000441802	NM_005245.3	385	cCt/cAt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161222	56161222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	107	466	4	ENST00000399503.3:c.1091G>T	p.Arg364Leu	p.R364L	ENST00000399503	NM_005921.1	364	cGg/cTg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176518025	176518025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	209	634	0	ENST00000292408.4:c.523G>A	p.Ala175Thr	p.A175T	ENST00000292408	NM_213647.1	175	Gca/Aca																																																																														
E2F3	0	MSKCC	GRCh37	6	20486919	20486919	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	77	329	0	ENST00000346618.3:c.885-1C>T		p.X295_splice	ENST00000346618	NM_001949.4	295																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32163855	32163855	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	54	450	0	ENST00000375023.3:c.5371del	p.Ala1791GlnfsTer11	p.A1791Qfs*11	ENST00000375023	NM_004557.3	1791	Gca/ca																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32181578	32181578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	215	632	0	ENST00000375023.3:c.2207G>T	p.Gly736Val	p.G736V	ENST00000375023	NM_004557.3	736	gGg/gTg																																																																														
PMS2	0	MSKCC	GRCh37	7	6026806	6026806	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	27	212	0	ENST00000265849.7:c.1590G>T	p.Gln530His	p.Q530H	ENST00000265849	NM_000535.5	530	caG/caT																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508553	106508553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	75	300	0	ENST00000359195.3:c.547C>A	p.Pro183Thr	p.P183T	ENST00000359195	NM_002649.2	183	Ccg/Acg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860135	151860135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	111	450	1	ENST00000262189.6:c.10527G>T	p.Gln3509His	p.Q3509H	ENST00000262189	NM_170606.2	3509	caG/caT																																																																														
PREX2	0	MSKCC	GRCh37	8	69021821	69021821	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	170	606	0	ENST00000288368.4:c.3109C>G	p.Leu1037Val	p.L1037V	ENST00000288368	NM_024870.2	1037	Ctg/Gtg																																																																														
PREX2	0	MSKCC	GRCh37	8	69028026	69028026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	73	519	0	ENST00000288368.4:c.3185G>A	p.Arg1062His	p.R1062H	ENST00000288368	NM_024870.2	1062	cGt/cAt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80430544	80430544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	112	551	0	ENST00000286548.4:c.464A>G	p.Asp155Gly	p.D155G	ENST00000286548	NM_002072.3	155	gAc/gGc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209369	98209369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	51	524	0	ENST00000331920.6:c.4169G>T	p.Gly1390Val	p.G1390V	ENST00000331920	NM_000264.3	1390	gGg/gTg																																																																														
AR	0	MSKCC	GRCh37	X	66905911	66905911	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	22	237	0	ENST00000374690.3:c.1832delA	p.Asn611IlefsTer15	p.N611Ifs*15	ENST00000374690	NM_000044.3	610	Aaa/aa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0025736-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			835	142	583	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341172	8341172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025736-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			673	162	457	1	ENST00000356435.5:c.5044G>A	p.Glu1682Lys	p.E1682K	ENST00000356435		1682	Gaa/Aaa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41274897	41274897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	617	485	0	ENST00000349496.5:c.1147T>C	p.Trp383Arg	p.W383R	ENST00000349496	NM_001904.3	383	Tgg/Cgg																																																																														
IGF1	0	MSKCC	GRCh37	12	102869433	102869433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	313	602	0	ENST00000307046.8:c.208G>A	p.Gly70Ser	p.G70S	ENST00000307046	NM_001111285.1	70	Ggc/Agc																																																																														
RAD51C	0	MSKCC	GRCh37	17	56770075	56770075	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	306	567	0	ENST00000337432.4:c.71G>C	p.Arg24Pro	p.R24P	ENST00000337432	NM_058216.2	24	cGg/cCg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368226	45368226	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	288	505	0	ENST00000262160.6:c.1376del	p.Pro459LeufsTer21	p.P459Lfs*21	ENST00000262160	NM_005901.5	459	cCt/ct																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508194	106508194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	136	265	1	ENST00000359195.3:c.188G>A	p.Gly63Asp	p.G63D	ENST00000359195	NM_002649.2	63	gGc/gAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139409740	139409740	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	305	544	0	ENST00000277541.6:c.2014+2T>C		p.X672_splice	ENST00000277541	NM_017617.3	672																																																																															
KDM6A	0	MSKCC	GRCh37	X	44969399	44969399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	440	430	0	ENST00000377967.4:c.4081T>C	p.Cys1361Arg	p.C1361R	ENST00000377967	NM_021140.2	1361	Tgt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	72	309	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	145	399	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
POLE	0	MSKCC	GRCh37	12	133253974	133253974	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61732929		P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	112	381	1	ENST00000320574.5:c.776G>A	p.Arg259His	p.R259H	ENST00000320574	NM_006231.2	259	cGc/cAc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67592108	67592108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	56	202	0	ENST00000274335.5:c.1924C>T	p.Arg642Ter	p.R642*	ENST00000274335		642	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	60	369	0	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	95	366	1	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911443	32911443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	40	274	0	ENST00000380152.3:c.2957del	p.Asn986IlefsTer5	p.N986Ifs*5	ENST00000380152		984	gAa/ga																																																																														
POLD1	0	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	36	279	1	ENST00000440232.2:c.342delG	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	176	518	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																														
FAT1	0	MSKCC	GRCh37	4	187517815	187517815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	24	167	0	ENST00000441802.2:c.12879del	p.His4293GlnfsTer56	p.H4293Qfs*56	ENST00000441802	NM_005245.3	4293	caC/ca																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911074	32911074	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	20	322	0	ENST00000380152.3:c.2588delA	p.Asn863IlefsTer11	p.N863Ifs*11	ENST00000380152		861	cAa/ca																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467843	50467843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	71	267	0	ENST00000331340.3:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000331340	NM_006060.4	360	Cgc/Tgc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306553	41306553	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	52	370	0	ENST00000373198.4:c.1106del	p.Gly369ValfsTer28	p.G369Vfs*28	ENST00000373198	NM_133170.3	369	gGt/gt																																																																														
POLE	0	MSKCC	GRCh37	12	133248859	133248859	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149296223		P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	62	397	3	ENST00000320574.5:c.1736G>A	p.Arg579His	p.R579H	ENST00000320574	NM_006231.2	579	cGc/cAc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53230914	53230914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	97	182	0	ENST00000375401.3:c.1879C>T	p.Arg627Cys	p.R627C	ENST00000375401	NM_004187.3	627	Cgc/Tgc																																																																														
AGO2	0	MSKCC	GRCh37	8	141545628	141545628	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	40	462	0	ENST00000220592.5:c.2210A>G	p.Asp737Gly	p.D737G	ENST00000220592	NM_012154.3	737	gAc/gGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	44	505	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
MET	0	MSKCC	GRCh37	7	116413126	116413126	+	intron_variant	Intron	DEL	A	A	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	53	394	1	ENST00000397752.3:c.3028+1091delA		p.*1010*	ENST00000397752	NM_000245.2																																																																																
DOT1L	0	MSKCC	GRCh37	19	2222455	2222455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	66	391	1	ENST00000398665.3:c.3287C>T	p.Thr1096Met	p.T1096M	ENST00000398665	NM_032482.2	1096	aCg/aTg																																																																														
AXIN1	0	MSKCC	GRCh37	16	347143	347143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	106	500	2	ENST00000262320.3:c.1868C>T	p.Ser623Leu	p.S623L	ENST00000262320	NM_003502.3	623	tCg/tTg																																																																														
NUF2	0	MSKCC	GRCh37	1	163306549	163306549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	31	289	0	ENST00000271452.3:c.346C>T	p.Arg116Trp	p.R116W	ENST00000271452	NM_145697.2	116	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023778	27023778	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	45	317	0	ENST00000324856.7:c.884T>G	p.Leu295Arg	p.L295R	ENST00000324856	NM_006015.4	295	cTc/cGc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78444610	78444612	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	89	253	1	ENST00000370768.2:c.77_79del	p.Gly26del	p.G26del	ENST00000370768	NM_003902.3	26	gGAGtt/gtt																																																																														
FH	0	MSKCC	GRCh37	1	241671944	241671944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	46	351	0	ENST00000366560.3:c.697C>T	p.Arg233Cys	p.R233C	ENST00000366560	NM_000143.3	233	Cgt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108192149	108192149	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	26	297	0	ENST00000278616.4:c.6572+2T>C		p.X2191_splice	ENST00000278616	NM_000051.3	2191																																																																															
CCND2	0	MSKCC	GRCh37	12	4383352	4383352	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	58	432	0	ENST00000261254.3:c.146A>C	p.Lys49Thr	p.K49T	ENST00000261254	NM_001759.3	49	aAg/aCg																																																																														
POLE	0	MSKCC	GRCh37	12	133256789	133256789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	125	348	2	ENST00000320574.5:c.305C>T	p.Pro102Leu	p.P102L	ENST00000320574	NM_006231.2	102	cCg/cTg																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987117	36987117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	44	414	0	ENST00000354822.5:c.572G>A	p.Arg191His	p.R191H	ENST00000354822	NM_001079668.2	191	cGc/cAc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680751	88680751	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201252722		P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	133	421	1	ENST00000360948.2:c.506G>A	p.Arg169His	p.R169H	ENST00000360948	NM_001012338.2	169	cGc/cAc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88727515	88727515	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	35	338	0	ENST00000360948.2:c.264G>A	p.Trp88Ter	p.W88*	ENST00000360948	NM_001012338.2	88	tgG/tgA																																																																														
TSC2	0	MSKCC	GRCh37	16	2121604	2121604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	86	407	1	ENST00000219476.3:c.1933G>A	p.Val645Ile	p.V645I	ENST00000219476	NM_000548.3	645	Gtc/Atc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14020477	14020477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	40	307	0	ENST00000311895.7:c.448C>T	p.Arg150Cys	p.R150C	ENST00000311895	NM_005236.2	150	Cgc/Tgc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832571	72832571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	37	218	0	ENST00000268489.5:c.4010G>A	p.Ser1337Asn	p.S1337N	ENST00000268489	NM_006885.3	1337	aGc/aAc																																																																														
RARA	0	MSKCC	GRCh37	17	38512359	38512359	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	97	273	0	ENST00000254066.5:c.1270A>C	p.Ser424Arg	p.S424R	ENST00000254066	NM_000964.3	424	Agc/Cgc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395793	45395793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	36	204	0	ENST00000262160.6:c.341G>A	p.Arg114His	p.R114H	ENST00000262160	NM_005901.5	114	cGt/cAt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2207609	2207609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	107	492	4	ENST00000398665.3:c.893C>T	p.Pro298Leu	p.P298L	ENST00000398665	NM_032482.2	298	cCc/cTc																																																																														
INSR	0	MSKCC	GRCh37	19	7174672	7174672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	92	382	0	ENST00000302850.5:c.1045G>A	p.Asp349Asn	p.D349N	ENST00000302850	NM_000208.2	349	Gac/Aac																																																																														
DNMT1	0	MSKCC	GRCh37	19	10249229	10249229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	45	315	1	ENST00000340748.4:c.3953C>T	p.Ala1318Val	p.A1318V	ENST00000340748		1318	gCg/gTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097602	11097602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	85	479	0	ENST00000344626.4:c.782C>A	p.Pro261His	p.P261H	ENST00000344626	NM_003072.3	261	cCt/cAt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11130370	11130370	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	97	445	1	ENST00000344626.4:c.2609T>A	p.Leu870His	p.L870H	ENST00000344626	NM_003072.3	870	cTc/cAc																																																																														
UPF1	0	MSKCC	GRCh37	19	18966799	18966799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	103	542	1	ENST00000262803.5:c.1610C>T	p.Thr537Met	p.T537M	ENST00000262803	NM_002911.3	537	aCg/aTg																																																																														
ERF	0	MSKCC	GRCh37	19	42753821	42753821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	129	572	0	ENST00000222329.4:c.443C>T	p.Thr148Met	p.T148M	ENST00000222329	NM_006494.2	148	aCg/aTg																																																																														
CENPA	0	MSKCC	GRCh37	2	27009121	27009126	+	inframe_deletion	In_Frame_Del	DEL	CCCGAC	CCCGAC	-			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	51	140	0	ENST00000335756.4:c.66_71del	p.Thr23_Pro24del	p.T23_P24del	ENST00000335756	NM_001809.3	19	agCCCGACc/agc																																																																														
MSH2	0	MSKCC	GRCh37	2	47657036	47657037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	66	299	0	ENST00000233146.2:c.1235dup	p.Asn412LysfsTer5	p.N412Kfs*5	ENST00000233146	NM_000251.2	411	ata/atAa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99156098	99156098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	132	334	0	ENST00000074304.5:c.778C>T	p.Arg260Trp	p.R260W	ENST00000074304	NM_001134224.1	260	Cgg/Tgg																																																																														
PMS1	0	MSKCC	GRCh37	2	190728832	190728833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	30	304	0	ENST00000441310.2:c.2224dup	p.Thr742AsnfsTer10	p.T742Nfs*10	ENST00000441310	NM_000534.4	740	-/A																																																																														
EP300	0	MSKCC	GRCh37	22	41572366	41572366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	53	374	2	ENST00000263253.7:c.4895C>T	p.Thr1632Met	p.T1632M	ENST00000263253	NM_001429.3	1632	aCg/aTg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31511154	31511154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	85	372	2	ENST00000344624.3:c.1420G>A	p.Asp474Asn	p.D474N	ENST00000344624		474	Gat/Aat																																																																														
CCND3	0	MSKCC	GRCh37	6	41903745	41903745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	162	408	2	ENST00000372991.4:c.812G>A	p.Arg271Gln	p.R271Q	ENST00000372991	NM_001760.3	271	cGg/cAg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157521860	157521860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	32	314	0	ENST00000346085.5:c.4132G>A	p.Gly1378Ser	p.G1378S	ENST00000346085	NM_020732.3	1378	Ggc/Agc																																																																														
INHBA	0	MSKCC	GRCh37	7	41730014	41730014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	57	355	0	ENST00000242208.4:c.515C>A	p.Thr172Asn	p.T172N	ENST00000242208	NM_002192.2	172	aCc/aAc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38189058	38189058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	48	398	0	ENST00000317025.8:c.956G>T	p.Arg319Met	p.R319M	ENST00000317025	NM_023034.1	319	aGg/aTg																																																																														
JAK2	0	MSKCC	GRCh37	9	5089865	5089865	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0026285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	57	200	0	ENST00000381652.3:c.2761+2T>C		p.X921_splice	ENST00000381652	NM_004972.3	921																																																																															
KIT	0	MSKCC	GRCh37	4	55593607	55593608	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TCC			P-0026287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	162	321	0	ENST00000288135.5:c.1673_1674insTCC	p.Lys558delinsAsnPro	p.K558delinsNP	ENST00000288135	NM_000222.2	558	aag/aaTCCg																																																																														
SETD2	0	MSKCC	GRCh37	3	47164360	47164360	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	127	204	0	ENST00000409792.3:c.1766del	p.Ser589IlefsTer12	p.S589Ifs*12	ENST00000409792	NM_014159.6	589	aGt/at																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	33	244	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ATM	0	MSKCC	GRCh37	11	108205781	108205781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	29	264	0	ENST00000278616.4:c.8096C>T	p.Pro2699Leu	p.P2699L	ENST00000278616	NM_000051.3	2699	cCa/cTa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602293	10602293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	83	346	0	ENST00000171111.5:c.1285G>T	p.Gly429Cys	p.G429C	ENST00000171111	NM_203500.1	429	Ggc/Tgc																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074036	8074036	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	23	223	0	ENST00000377482.5:c.623A>T	p.Asn208Ile	p.N208I	ENST00000377482	NM_018948.3	208	aAc/aTc																																																																														
FGF3	0	MSKCC	GRCh37	11	69631132	69631132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	45	354	0	ENST00000334134.2:c.280G>T	p.Gly94Trp	p.G94W	ENST00000334134	NM_005247.2	94	Ggg/Tgg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37882851	37882851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	64	362	2	ENST00000269571.5:c.2909G>T	p.Arg970Leu	p.R970L	ENST00000269571		970	cGg/cTg																																																																														
SETD2	0	MSKCC	GRCh37	3	47147573	47147573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	21	205	0	ENST00000409792.3:c.4753G>T	p.Asp1585Tyr	p.D1585Y	ENST00000409792	NM_014159.6	1585	Gat/Tat																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259025	89259025	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	14	84	0	ENST00000336596.2:c.169G>C	p.Gly57Arg	p.G57R	ENST00000336596	NM_005233.5	57	Ggt/Cgt																																																																														
IRF4	0	MSKCC	GRCh37	6	401621	401621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	49	295	2	ENST00000380956.4:c.943G>A	p.Val315Met	p.V315M	ENST00000380956	NM_001195286.1	315	Gtg/Atg																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197091	26197091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	84	218	0	ENST00000356476.2:c.388C>A	p.Arg130Ser	p.R130S	ENST00000356476		130	Cgc/Agc																																																																														
HGF	0	MSKCC	GRCh37	7	81392062	81392062	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	18	173	0	ENST00000222390.5:c.215A>T	p.Asn72Ile	p.N72I	ENST00000222390	NM_000601.4	72	aAt/aTt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521352	8521352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	43	252	0	ENST00000356435.5:c.886C>A	p.Gln296Lys	p.Q296K	ENST00000356435		296	Cag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	192	383	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67576433	67576433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	43	319	0	ENST00000274335.5:c.712C>T	p.Leu238Phe	p.L238F	ENST00000274335		238	Ctt/Ttt																																																																														
RBM10	0	MSKCC	GRCh37	X	47039401	47039401	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	139	333	0	ENST00000329236.7:c.794del	p.Asn265ThrfsTer142	p.N265Tfs*142	ENST00000329236	NM_001204466.1	265	Aac/ac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	419	343	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175942	176175942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	40	55	0	ENST00000367669.3:c.173C>T	p.Ser58Leu	p.S58L	ENST00000367669	NM_022457.5	58	tCg/tTg																																																																														
NSD1	0	MSKCC	GRCh37	5	176721024	176721024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	64	285	2	ENST00000439151.2:c.6655C>T	p.Arg2219Cys	p.R2219C	ENST00000439151	NM_022455.4	2219	Cgt/Tgt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156834148	156834148	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0026293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1452	80	444	0	ENST00000524377.1:c.215A>G	p.Tyr72Cys	p.Y72C	ENST00000524377	NM_002529.3	72	tAc/tGc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11924319	11924319	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	87	122	0	ENST00000353533.5:c.115+1G>T		p.X39_splice	ENST00000353533	NM_003010.3	39																																																																															
EGFR	0	MSKCC	GRCh37	7	55241659	55241659	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	419	383	0	ENST00000275493.2:c.2107C>G	p.Leu703Val	p.L703V	ENST00000275493	NM_005228.3	703	Ctc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	85	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	67	182	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	112	406	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																														
GLI1	0	MSKCC	GRCh37	12	57858477	57858477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	141	302	0	ENST00000228682.2:c.215G>A	p.Arg72Gln	p.R72Q	ENST00000228682	NM_005269.2	72	cGg/cAg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117788	70117788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	125	366	0	ENST00000245479.2:c.256T>C	p.Trp86Arg	p.W86R	ENST00000245479	NM_000346.3	86	Tgg/Cgg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119913	70119914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	61	313	0	ENST00000245479.2:c.917_918dup	p.Pro307CysfsTer77	p.P307Cfs*77	ENST00000245479	NM_000346.3	305	-/GT																																																																														
SOX9	0	MSKCC	GRCh37	17	70120337	70120338	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTCC			P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	257	655	0	ENST00000245479.2:c.1341_1345dup	p.Ser449ThrfsTer23	p.S449Tfs*23	ENST00000245479	NM_000346.3	447	aac/aACTCCac																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149512365	149512365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	272	366	0	ENST00000261799.4:c.1075G>A	p.Asp359Asn	p.D359N	ENST00000261799	NM_002609.3	359	Gac/Aac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144150	11144150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	202	379	0	ENST00000344626.4:c.3731G>A	p.Arg1244His	p.R1244H	ENST00000344626	NM_003072.3	1244	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	198	413	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																														
CD276	0	MSKCC	GRCh37	15	73994790	73994790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	154	393	1	ENST00000318443.5:c.274C>T	p.Arg92Cys	p.R92C	ENST00000318443	NM_001024736.1	92	Cgc/Tgc																																																																														
TERT	0	MSKCC	GRCh37	5	1293767	1293767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	237	456	0	ENST00000310581.5:c.1234C>T	p.His412Tyr	p.H412Y	ENST00000310581	NM_198253.2	412	Cac/Tac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	153	291	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	141	336	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
ERCC3	0	MSKCC	GRCh37	2	128015293	128015293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	127	259	0	ENST00000285398.2:c.2228G>A	p.Arg743His	p.R743H	ENST00000285398	NM_000122.1	743	cGc/cAc																																																																														
ETV6	0	MSKCC	GRCh37	12	12022652	12022652	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200525003		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	164	281	0	ENST00000396373.4:c.758C>T	p.Pro253Leu	p.P253L	ENST00000396373	NM_001987.4	253	cCg/cTg																																																																														
PAK1	0	MSKCC	GRCh37	11	77047283	77047283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	137	302	0	ENST00000356341.3:c.1261C>T	p.Arg421Trp	p.R421W	ENST00000356341	NM_002576.4	421	Cgg/Tgg																																																																														
SRC	0	MSKCC	GRCh37	20	36012603	36012603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	171	311	1	ENST00000358208.4:c.47G>A	p.Arg16His	p.R16H	ENST00000358208		16	cGc/cAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11121076	11121076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	176	395	0	ENST00000344626.4:c.2143G>A	p.Asp715Asn	p.D715N	ENST00000344626	NM_003072.3	715	Gat/Aat																																																																														
NPM1	0	MSKCC	GRCh37	5	170814993	170814993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	85	268	0	ENST00000296930.5:c.41C>T	p.Pro14Leu	p.P14L	ENST00000296930	NM_002520.6	14	cCc/cTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144113	11144113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	223	419	1	ENST00000344626.4:c.3694G>A	p.Gly1232Ser	p.G1232S	ENST00000344626	NM_003072.3	1232	Ggc/Agc																																																																														
GATA1	0	MSKCC	GRCh37	X	48650778	48650778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	176	508	0	ENST00000376670.3:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000376670	NM_002049.3	216	cGg/cAg																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41749500	41749500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	165	429	1	ENST00000226382.2:c.295C>T	p.Arg99Trp	p.R99W	ENST00000226382	NM_003924.3	99	Cgg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16254929	16254929	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	154	324	0	ENST00000375759.3:c.2194C>T	p.Arg732Ter	p.R732*	ENST00000375759	NM_015001.2	732	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	169	416	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123247618	123247618	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	131	239	1	ENST00000358487.5:c.1873C>T	p.Arg625Ter	p.R625*	ENST00000358487	NM_000141.4	625	Cga/Tga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178919203	178919203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	94	228	0	ENST00000263967.3:c.688C>T	p.Arg230Ter	p.R230*	ENST00000263967	NM_006218.2	230	Cga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	104	153	0	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																																																														
MST1	0	MSKCC	GRCh37	3	49725078	49725078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	225	427	0	ENST00000449682.2:c.266G>A	p.Ser89Asn	p.S89N	ENST00000449682	NM_020998.3	89	aGc/aAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	91	180	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																																																														
ATRX	0	MSKCC	GRCh37	X	76931785	76931785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	137	309	0	ENST00000373344.5:c.3745G>A	p.Ala1249Thr	p.A1249T	ENST00000373344	NM_000489.3	1249	Gcc/Acc																																																																														
MAPK3	0	MSKCC	GRCh37	16	30133308	30133308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	163	353	2	ENST00000263025.4:c.190C>T	p.Arg64Cys	p.R64C	ENST00000263025	NM_002746.2	64	Cgc/Tgc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741928	17741928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	93	159	0	ENST00000250003.3:c.599C>A	p.Ser200Tyr	p.S200Y	ENST00000250003	NM_002478.4	200	tCc/tAc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63530162	63530162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	188	283	0	ENST00000307078.5:c.2273C>T	p.Ala758Val	p.A758V	ENST00000307078	NM_004655.3	758	gCg/gTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5208051	5208051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	127	299	0	ENST00000357368.4:c.5660C>T	p.Thr1887Met	p.T1887M	ENST00000357368	NM_002850.3	1887	aCg/aTg																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944961	31944961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	160	318	2	ENST00000340398.3:c.140C>T	p.Ala47Val	p.A47V	ENST00000340398	NM_001013699.2	47	gCg/gTg																																																																														
KDR	0	MSKCC	GRCh37	4	55972013	55972013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	134	304	0	ENST00000263923.4:c.1631C>T	p.Ser544Phe	p.S544F	ENST00000263923	NM_002253.2	544	tCc/tTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11145645	11145645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	237	419	0	ENST00000344626.4:c.4007G>A	p.Arg1336His	p.R1336H	ENST00000344626	NM_003072.3	1336	cGc/cAc																																																																														
RET	0	MSKCC	GRCh37	10	43602002	43602002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	209	488	1	ENST00000355710.3:c.1046C>T	p.Ala349Val	p.A349V	ENST00000355710	NM_020975.4	349	gCg/gTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244223	5244223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199851847		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	178	408	1	ENST00000357368.4:c.1259G>A	p.Arg420His	p.R420H	ENST00000357368	NM_002850.3	420	cGc/cAc																																																																														
IL7R	0	MSKCC	GRCh37	5	35871205	35871205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	118	268	0	ENST00000303115.3:c.427G>A	p.Ala143Thr	p.A143T	ENST00000303115	NM_002185.3	143	Gcc/Acc																																																																														
FAT1	0	MSKCC	GRCh37	4	187557908	187557908	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113970444		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	146	289	0	ENST00000441802.2:c.3803G>A	p.Arg1268Gln	p.R1268Q	ENST00000441802	NM_005245.3	1268	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	193	384	1	ENST00000269305.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000269305	NM_001126112.2	337	cGc/cAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390606	139390606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	234	554	1	ENST00000277541.6:c.7585G>A	p.Val2529Ile	p.V2529I	ENST00000277541	NM_017617.3	2529	Gtc/Atc																																																																														
BCL6	604	MSKCC	GRCh37	3	187447384	187447384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780987785		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	198	333	0	ENST00000232014.4:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000232014	NM_001130845.1	270	cGa/cAa																																																																														
MEN1	0	MSKCC	GRCh37	11	64575491	64575491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	201	339	2	ENST00000337652.1:c.541G>A	p.Ala181Thr	p.A181T	ENST00000337652	NM_130803.2	181	Gcc/Acc																																																																														
CTLA4	0	MSKCC	GRCh37	2	204735456	204735456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	126	243	0	ENST00000302823.3:c.257C>T	p.Ala86Val	p.A86V	ENST00000302823	NM_005214.4	86	gCg/gTg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891287	101891287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	173	383	0	ENST00000374994.4:c.248C>T	p.Pro83Leu	p.P83L	ENST00000374994	NM_004612.2	83	cCg/cTg																																																																														
INHBA	0	MSKCC	GRCh37	7	41730125	41730125	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142519810		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	74	218	0	ENST00000242208.4:c.404C>T	p.Thr135Met	p.T135M	ENST00000242208	NM_002192.2	135	aCg/aTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779578	3779578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	280	596	0	ENST00000262367.5:c.5470G>A	p.Ala1824Thr	p.A1824T	ENST00000262367	NM_004380.2	1824	Gcc/Acc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106327	27106327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	172	380	0	ENST00000324856.7:c.5938C>T	p.Arg1980Cys	p.R1980C	ENST00000324856	NM_006015.4	1980	Cgc/Tgc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738094	145738094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	216	573	2	ENST00000428558.2:c.2816C>T	p.Ala939Val	p.A939V	ENST00000428558	NM_004260.3	939	gCg/gTg																																																																														
GLI1	0	MSKCC	GRCh37	12	57861822	57861822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	175	413	0	ENST00000228682.2:c.1123G>T	p.Asp375Tyr	p.D375Y	ENST00000228682	NM_005269.2	375	Gat/Tat																																																																														
BTK	0	MSKCC	GRCh37	X	100630236	100630236	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	127	259	1	ENST00000308731.7:c.37C>T	p.Arg13Ter	p.R13*	ENST00000308731	NM_000061.2	13	Cga/Tga																																																																														
ERCC2	0	MSKCC	GRCh37	19	45860787	45860787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	150	365	1	ENST00000391945.4:c.1322C>T	p.Ser441Leu	p.S441L	ENST00000391945	NM_000400.3	441	tCg/tTg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41277885	41277885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	130	211	0	ENST00000349496.5:c.1849G>A	p.Val617Ile	p.V617I	ENST00000349496	NM_001904.3	617	Gtc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7578421	7578421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	172	412	0	ENST00000269305.4:c.509C>T	p.Thr170Met	p.T170M	ENST00000269305	NM_001126112.2	170	aCg/aTg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36231774	36231774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	231	430	0	ENST00000300305.3:c.610C>T	p.Arg204Ter	p.R204*	ENST00000300305		204	Cga/Tga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3820836	3820836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	270	561	2	ENST00000262367.5:c.2615C>T	p.Thr872Met	p.T872M	ENST00000262367	NM_004380.2	872	aCg/aTg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78919548	78919548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	147	263	0	ENST00000306801.3:c.3107C>T	p.Pro1036Leu	p.P1036L	ENST00000306801	NM_020761.2	1036	cCg/cTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276310	15276310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	205	418	3	ENST00000263388.2:c.5684G>A	p.Arg1895His	p.R1895H	ENST00000263388	NM_000435.2	1895	cGc/cAc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138145	64138145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	199	439	1	ENST00000334205.4:c.2068G>A	p.Val690Met	p.V690M	ENST00000334205	NM_003942.2	690	Gtg/Atg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107008	27107008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	28	258	1	ENST00000324856.7:c.6619C>T	p.Gln2207Ter	p.Q2207*	ENST00000324856	NM_006015.4	2207	Cag/Tag																																																																														
FAT1	0	MSKCC	GRCh37	4	187542357	187542357	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	84	215	1	ENST00000441802.2:c.5383C>T	p.Arg1795Ter	p.R1795*	ENST00000441802	NM_005245.3	1795	Cga/Tga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495736	56495736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	139	293	0	ENST00000267101.3:c.3926G>A	p.Arg1309His	p.R1309H	ENST00000267101	NM_001982.3	1309	cGc/cAc																																																																														
ARAF	0	MSKCC	GRCh37	X	47430798	47430798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	249	429	1	ENST00000377045.4:c.1763G>A	p.Arg588His	p.R588H	ENST00000377045	NM_001654.4	588	cGc/cAc																																																																														
AKT3	0	MSKCC	GRCh37	1	243828129	243828129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	143	307	0	ENST00000263826.5:c.229C>A	p.Leu77Ile	p.L77I	ENST00000263826	NM_005465.4	77	Ctc/Atc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41277225	41277225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	109	184	0	ENST00000349496.5:c.1694G>A	p.Arg565His	p.R565H	ENST00000349496	NM_001904.3	565	cGc/cAc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56493772	56493772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	195	373	0	ENST00000267101.3:c.3088G>A	p.Ala1030Thr	p.A1030T	ENST00000267101	NM_001982.3	1030	Gcc/Acc																																																																														
TCF3	0	MSKCC	GRCh37	19	1612244	1612244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	161	299	0	ENST00000344749.5:c.1775C>T	p.Ala592Val	p.A592V	ENST00000344749	NM_001136139.2	592	gCc/gTc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98231238	98231238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	184	404	0	ENST00000331920.6:c.2045G>A	p.Arg682His	p.R682H	ENST00000331920	NM_000264.3	682	cGc/cAc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31368254	31368254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	176	337	0	ENST00000328111.2:c.125G>A	p.Arg42His	p.R42H	ENST00000328111	NM_006892.3	42	cGc/cAc																																																																														
MSH6	0	MSKCC	GRCh37	2	48027661	48027661	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	100	174	0	ENST00000234420.5:c.2539G>T	p.Glu847Ter	p.E847*	ENST00000234420	NM_000179.2	847	Gaa/Taa																																																																														
FAT1	0	MSKCC	GRCh37	4	187628841	187628841	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200579335		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	176	374	2	ENST00000441802.2:c.2141C>T	p.Pro714Leu	p.P714L	ENST00000441802	NM_005245.3	714	cCg/cTg																																																																														
DAXX	0	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	115	229	0	ENST00000374542.5:c.767G>A	p.Arg256His	p.R256H	ENST00000374542	NM_001141970.1	256	cGc/cAc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310916	123310916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	175	319	0	ENST00000358487.5:c.512C>T	p.Ala171Val	p.A171V	ENST00000358487	NM_000141.4	171	gCg/gTg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914815	32914815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	123	300	0	ENST00000380152.3:c.6323G>A	p.Arg2108His	p.R2108H	ENST00000380152		2108	cGt/cAt																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856283	111856283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	17	21	1	ENST00000341259.2:c.334G>A	p.Ala112Thr	p.A112T	ENST00000341259	NM_005475.2	112	Gcc/Acc																																																																														
ATM	0	MSKCC	GRCh37	11	108153601	108153601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	78	97	0	ENST00000278616.4:c.3741C>A	p.Phe1247Leu	p.F1247L	ENST00000278616	NM_000051.3	1247	ttC/ttA																																																																														
CRKL	0	MSKCC	GRCh37	22	21288474	21288474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	188	348	0	ENST00000354336.3:c.719C>T	p.Ala240Val	p.A240V	ENST00000354336	NM_005207.3	240	gCg/gTg																																																																														
APC	0	MSKCC	GRCh37	5	112176873	112176873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	141	244	0	ENST00000257430.4:c.5582C>T	p.Ser1861Phe	p.S1861F	ENST00000257430	NM_000038.5	1861	tCt/tTt																																																																														
BCOR	0	MSKCC	GRCh37	X	39933872	39933872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	233	454	2	ENST00000378444.4:c.727C>T	p.Arg243Cys	p.R243C	ENST00000378444	NM_001123385.1	243	Cgc/Tgc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118347553	118347553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	142	252	0	ENST00000534358.1:c.3190C>T	p.Arg1064Ter	p.R1064*	ENST00000534358	NM_005933.3	1064	Cga/Tga																																																																														
IL7R	0	MSKCC	GRCh37	5	35875634	35875634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	154	281	0	ENST00000303115.3:c.821C>T	p.Pro274Leu	p.P274L	ENST00000303115	NM_002185.3	274	cCc/cTc																																																																														
MGA	0	MSKCC	GRCh37	15	41961688	41961688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	121	302	1	ENST00000219905.7:c.596G>A	p.Arg199His	p.R199H	ENST00000219905	NM_001164273.1	199	cGt/cAt																																																																														
PPM1D	0	MSKCC	GRCh37	17	58711261	58711261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	178	382	0	ENST00000305921.3:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000305921	NM_003620.3	250	cGa/cAa																																																																														
WT1	0	MSKCC	GRCh37	11	32456597	32456597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	45	65	0	ENST00000332351.3:c.295G>A	p.Ala99Thr	p.A99T	ENST00000332351	NM_024426.4	99	Gcg/Acg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720857	89720857	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	158	268	0	ENST00000371953.3:c.1008C>A	p.Tyr336Ter	p.Y336*	ENST00000371953	NM_000314.4	336	taC/taA																																																																														
WT1	0	MSKCC	GRCh37	11	32456365	32456365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	209	455	1	ENST00000332351.3:c.527G>A	p.Arg176His	p.R176H	ENST00000332351	NM_024426.4	176	cGc/cAc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228979	36228979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	175	375	1	ENST00000222270.7:c.7759C>T	p.Arg2587Ter	p.R2587*	ENST00000222270	NM_014727.1	2587	Cga/Tga																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509138	106509138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	155	325	2	ENST00000359195.3:c.1132G>A	p.Asp378Asn	p.D378N	ENST00000359195	NM_002649.2	378	Gac/Aac																																																																														
SRC	0	MSKCC	GRCh37	20	36024634	36024634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	233	474	4	ENST00000358208.4:c.623G>A	p.Arg208His	p.R208H	ENST00000358208		208	cGc/cAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399216	139399216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	185	381	0	ENST00000277541.6:c.4927G>A	p.Ala1643Thr	p.A1643T	ENST00000277541	NM_017617.3	1643	Gcc/Acc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793286	242793286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	168	474	0	ENST00000334409.5:c.791G>A	p.Arg264His	p.R264H	ENST00000334409	NM_005018.2	264	cGc/cAc																																																																														
MSH2	0	MSKCC	GRCh37	2	47672741	47672741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	156	362	1	ENST00000233146.2:c.1331G>A	p.Arg444His	p.R444H	ENST00000233146	NM_000251.2	444	cGt/cAt																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149512332	149512332	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200684708		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	143	285	0	ENST00000261799.4:c.1108C>T	p.Arg370Cys	p.R370C	ENST00000261799	NM_002609.3	370	Cgc/Tgc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149516600	149516600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	174	420	1	ENST00000261799.4:c.11C>T	p.Pro4Leu	p.P4L	ENST00000261799	NM_002609.3	4	cCg/cTg																																																																														
ROS1	0	MSKCC	GRCh37	6	117631362	117631362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150262256		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	128	245	0	ENST00000368508.3:c.6316G>A	p.Ala2106Thr	p.A2106T	ENST00000368508	NM_002944.2	2106	Gcc/Acc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498444	89498444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	96	234	0	ENST00000336596.2:c.2416G>A	p.Asp806Asn	p.D806N	ENST00000336596	NM_005233.5	806	Gat/Aat																																																																														
SPEN	0	MSKCC	GRCh37	1	16245539	16245539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	120	327	0	ENST00000375759.3:c.1514G>A	p.Arg505His	p.R505H	ENST00000375759	NM_015001.2	505	cGc/cAc																																																																														
MYCN	0	MSKCC	GRCh37	2	16086209	16086209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	162	269	0	ENST00000281043.3:c.1385G>A	p.Arg462Gln	p.R462Q	ENST00000281043	NM_005378.4	462	cGg/cAg																																																																														
ARAF	0	MSKCC	GRCh37	X	47430729	47430729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	176	355	0	ENST00000377045.4:c.1694C>T	p.Ala565Val	p.A565V	ENST00000377045	NM_001654.4	565	gCc/gTc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3808010	3808010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	131	263	0	ENST00000262367.5:c.3409A>G	p.Thr1137Ala	p.T1137A	ENST00000262367	NM_004380.2	1137	Acc/Gcc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62294213	62294213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	198	414	0	ENST00000508582.2:c.581G>A	p.Arg194His	p.R194H	ENST00000508582		194	cGc/cAc																																																																														
SMO	0	MSKCC	GRCh37	7	128843243	128843243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	158	416	0	ENST00000249373.3:c.350G>A	p.Arg117His	p.R117H	ENST00000249373	NM_005631.4	117	cGc/cAc																																																																														
SESN3	0	MSKCC	GRCh37	11	94923009	94923009	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	176	327	0	ENST00000536441.1:c.459A>C	p.Lys153Asn	p.K153N	ENST00000536441	NM_144665.3	153	aaA/aaC																																																																														
DROSHA	0	MSKCC	GRCh37	5	31515239	31515239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	240	465	0	ENST00000344624.3:c.1146G>T	p.Lys382Asn	p.K382N	ENST00000344624		382	aaG/aaT																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145739584	145739584	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772515188		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	219	449	0	ENST00000428558.2:c.1867C>T	p.Arg623Cys	p.R623C	ENST00000428558	NM_004260.3	623	Cgc/Tgc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790066	40790066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	191	405	3	ENST00000373198.4:c.2665C>T	p.Arg889Trp	p.R889W	ENST00000373198	NM_133170.3	889	Cgg/Tgg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70970924	70970924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	152	357	2	ENST00000276594.2:c.1337G>A	p.Arg446Gln	p.R446Q	ENST00000276594	NM_024504.3	446	cGg/cAg																																																																														
AR	0	MSKCC	GRCh37	X	66765382	66765382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	175	400	0	ENST00000374690.3:c.394G>A	p.Val132Ile	p.V132I	ENST00000374690	NM_000044.3	132	Gtc/Atc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599948	10599948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111830952		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	194	445	1	ENST00000171111.5:c.1628C>T	p.Thr543Met	p.T543M	ENST00000171111	NM_203500.1	543	aCg/aTg																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281699	49281699	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	269	472	0	ENST00000282018.3:c.746T>C	p.Ile249Thr	p.I249T	ENST00000282018	NM_020377.2	249	aTc/aCc																																																																														
RAD51D	0	MSKCC	GRCh37	17	33428252	33428252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	121	252	2	ENST00000335858.7:c.535C>T	p.Arg179Cys	p.R179C	ENST00000335858	NM_133629.2	179	Cgc/Tgc																																																																														
SDHA	0	MSKCC	GRCh37	5	251560	251560	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1042170		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	172	376	0	ENST00000264932.6:c.1771G>A	p.Ala591Thr	p.A591T	ENST00000264932	NM_004168.2	591	Gcg/Acg																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2491347	2491347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	210	443	0	ENST00000355716.4:c.390G>T	p.Gln130His	p.Q130H	ENST00000355716	NM_003820.2	130	caG/caT																																																																														
SPEN	0	MSKCC	GRCh37	1	16199369	16199369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	124	233	0	ENST00000375759.3:c.142G>A	p.Ala48Thr	p.A48T	ENST00000375759	NM_015001.2	48	Gct/Act																																																																														
SPEN	0	MSKCC	GRCh37	1	16254764	16254764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	215	407	0	ENST00000375759.3:c.2029C>T	p.Pro677Ser	p.P677S	ENST00000375759	NM_015001.2	677	Cct/Tct																																																																														
SPEN	0	MSKCC	GRCh37	1	16262717	16262717	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139094823		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	166	241	1	ENST00000375759.3:c.9982G>A	p.Ala3328Thr	p.A3328T	ENST00000375759	NM_015001.2	3328	Gct/Act																																																																														
SPEN	0	MSKCC	GRCh37	1	16265301	16265301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	136	369	0	ENST00000375759.3:c.10793C>A	p.Ala3598Asp	p.A3598D	ENST00000375759	NM_015001.2	3598	gCc/gAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023522	27023522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	212	378	0	ENST00000324856.7:c.628C>A	p.His210Asn	p.H210N	ENST00000324856	NM_006015.4	210	Cac/Aac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105815	27105815	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	136	299	0	ENST00000324856.7:c.5426T>G	p.Phe1809Cys	p.F1809C	ENST00000324856	NM_006015.4	1809	tTt/tGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106047	27106047	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	129	296	1	ENST00000324856.7:c.5658G>T	p.Glu1886Asp	p.E1886D	ENST00000324856	NM_006015.4	1886	gaG/gaT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106133	27106133	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	155	310	0	ENST00000324856.7:c.5744T>C	p.Leu1915Ser	p.L1915S	ENST00000324856	NM_006015.4	1915	tTg/tCg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932085	36932085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	166	294	0	ENST00000361632.4:c.2384G>T	p.Ser795Ile	p.S795I	ENST00000361632		795	aGc/aTc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932327	36932327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	183	433	0	ENST00000361632.4:c.2142C>A	p.Ser714Arg	p.S714R	ENST00000361632		714	agC/agA																																																																														
CSF3R	0	MSKCC	GRCh37	1	36935334	36935334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	206	406	0	ENST00000361632.4:c.1393C>A	p.Leu465Met	p.L465M	ENST00000361632		465	Ctg/Atg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36939205	36939205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	184	421	0	ENST00000361632.4:c.504G>T	p.Gln168His	p.Q168H	ENST00000361632		168	caG/caT																																																																														
MPL	0	MSKCC	GRCh37	1	43805223	43805223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	212	408	0	ENST00000372470.3:c.673A>G	p.Thr225Ala	p.T225A	ENST00000372470	NM_005373.2	225	Acc/Gcc																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46512241	46512241	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	138	324	0	ENST00000262741.5:c.998A>G	p.Lys333Arg	p.K333R	ENST00000262741	NM_003629.3	333	aAg/aGg																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46531852	46531852	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	99	132	0	ENST00000262741.5:c.496-1G>T		p.X166_splice	ENST00000262741	NM_003629.3	166																																																																															
JAK1	0	MSKCC	GRCh37	1	65301888	65301888	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	103	171	0	ENST00000342505.4:c.3151G>T	p.Glu1051Ter	p.E1051*	ENST00000342505	NM_002227.2	1051	Gaa/Taa																																																																														
CSDE1	0	MSKCC	GRCh37	1	115272983	115272983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	176	439	0	ENST00000438362.2:c.1390G>T	p.Val464Phe	p.V464F	ENST00000438362	NM_001242891.1	464	Gtt/Ttt																																																																														
CSDE1	0	MSKCC	GRCh37	1	115276614	115276614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	161	328	0	ENST00000438362.2:c.845G>T	p.Arg282Ile	p.R282I	ENST00000438362	NM_001242891.1	282	aGa/aTa																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166058	118166058	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	120	264	0	ENST00000369448.3:c.568T>G	p.Ser190Ala	p.S190A	ENST00000369448	NM_017709.3	190	Tct/Gct																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458982	120458982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	189	404	0	ENST00000256646.2:c.6363G>T	p.Lys2121Asn	p.K2121N	ENST00000256646	NM_024408.3	2121	aaG/aaT																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120466455	120466455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	197	359	0	ENST00000256646.2:c.4664C>A	p.Pro1555His	p.P1555H	ENST00000256646	NM_024408.3	1555	cCt/cAt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843599	156843599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	236	413	2	ENST00000524377.1:c.1025G>A	p.Arg342Gln	p.R342Q	ENST00000524377	NM_002529.3	342	cGg/cAg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851379	156851379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	173	399	0	ENST00000524377.1:c.2336C>T	p.Ala779Val	p.A779V	ENST00000524377	NM_002529.3	779	gCc/gTc																																																																														
DDR2	0	MSKCC	GRCh37	1	162743329	162743329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	133	228	0	ENST00000367921.3:c.1799A>G	p.Asn600Ser	p.N600S	ENST00000367921	NM_006182.2	600	aAc/aGc																																																																														
DDR2	0	MSKCC	GRCh37	1	162746072	162746072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	129	229	0	ENST00000367921.3:c.2195G>A	p.Ser732Asn	p.S732N	ENST00000367921	NM_006182.2	732	aGc/aAc																																																																														
DDR2	0	MSKCC	GRCh37	1	162749905	162749905	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	143	260	0	ENST00000367921.3:c.2437T>C	p.Tyr813His	p.Y813H	ENST00000367921	NM_006182.2	813	Tac/Cac																																																																														
DDR2	0	MSKCC	GRCh37	1	162750032	162750032	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	115	231	0	ENST00000367921.3:c.2564A>G	p.Glu855Gly	p.E855G	ENST00000367921	NM_006182.2	855	gAg/gGg																																																																														
CDC73	0	MSKCC	GRCh37	1	193104562	193104562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	303	305	0	ENST00000367435.3:c.349G>T	p.Gly117Cys	p.G117C	ENST00000367435	NM_024529.4	117	Ggt/Tgt																																																																														
IKBKE	0	MSKCC	GRCh37	1	206649665	206649665	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	199	341	0	ENST00000367120.3:c.500A>G	p.Asp167Gly	p.D167G	ENST00000367120	NM_014002.3	167	gAt/gGt																																																																														
IKBKE	0	MSKCC	GRCh37	1	206650023	206650023	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	123	253	1	ENST00000367120.3:c.543T>A	p.His181Gln	p.H181Q	ENST00000367120	NM_014002.3	181	caT/caA																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612893	228612893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	148	245	0	ENST00000366696.1:c.134G>A	p.Gly45Asp	p.G45D	ENST00000366696	NM_003493.2	45	gGc/gAc																																																																														
FH	0	MSKCC	GRCh37	1	241663773	241663773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	299	328	0	ENST00000366560.3:c.1354T>C	p.Ser452Pro	p.S452P	ENST00000366560	NM_000143.3	452	Tct/Cct																																																																														
RET	0	MSKCC	GRCh37	10	43619222	43619222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	142	320	0	ENST00000355710.3:c.2905C>T	p.Arg969Trp	p.R969W	ENST00000355710	NM_020975.4	969	Cgg/Tgg																																																																														
TET1	0	MSKCC	GRCh37	10	70333132	70333132	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	204	401	0	ENST00000373644.4:c.1037A>G	p.Gln346Arg	p.Q346R	ENST00000373644	NM_030625.2	346	cAa/cGa																																																																														
TET1	0	MSKCC	GRCh37	10	70441190	70441190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	156	387	1	ENST00000373644.4:c.4859C>T	p.Ala1620Val	p.A1620V	ENST00000373644	NM_030625.2	1620	gCt/gTt																																																																														
TET1	0	MSKCC	GRCh37	10	70451407	70451407	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	185	341	0	ENST00000373644.4:c.6247C>T	p.Gln2083Ter	p.Q2083*	ENST00000373644	NM_030625.2	2083	Caa/Taa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123246939	123246939	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	156	303	0	ENST00000358487.5:c.1987-1G>T		p.X663_splice	ENST00000358487	NM_000141.4	663																																																																															
RPS6KA4	0	MSKCC	GRCh37	11	64138835	64138835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	186	382	0	ENST00000334205.4:c.2202G>T	p.Lys734Asn	p.K734N	ENST00000334205	NM_003942.2	734	aaG/aaT																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138840	64138840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	186	364	0	ENST00000334205.4:c.2207G>A	p.Arg736Gln	p.R736Q	ENST00000334205	NM_003942.2	736	cGg/cAg																																																																														
MEN1	0	MSKCC	GRCh37	11	64572181	64572181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	152	228	0	ENST00000337652.1:c.1473G>T	p.Glu491Asp	p.E491D	ENST00000337652	NM_130803.2	491	gaG/gaT																																																																														
CCND1	0	MSKCC	GRCh37	11	69462845	69462845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	229	444	1	ENST00000227507.2:c.658C>T	p.Pro220Ser	p.P220S	ENST00000227507	NM_053056.2	220	Ccc/Tcc																																																																														
CCND1	0	MSKCC	GRCh37	11	69462909	69462909	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	201	309	0	ENST00000227507.2:c.722C>A	p.Pro241Gln	p.P241Q	ENST00000227507	NM_053056.2	241	cCg/cAg																																																																														
FGF3	0	MSKCC	GRCh37	11	69625236	69625236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	188	414	0	ENST00000334134.2:c.557G>T	p.Arg186Met	p.R186M	ENST00000334134	NM_005247.2	186	aGg/aTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71940537	71940537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	207	385	0	ENST00000298229.2:c.688G>A	p.Glu230Lys	p.E230K	ENST00000298229	NM_001567.3	230	Gag/Aag																																																																														
INPPL1	0	MSKCC	GRCh37	11	71940993	71940993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	247	435	0	ENST00000298229.2:c.869G>T	p.Ser290Ile	p.S290I	ENST00000298229	NM_001567.3	290	aGc/aTc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71941936	71941936	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	200	420	0	ENST00000298229.2:c.1295del	p.Asn432ThrfsTer11	p.N432Tfs*11	ENST00000298229	NM_001567.3	432	Aac/ac																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942084	71942084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	265	456	0	ENST00000298229.2:c.1348G>T	p.Gly450Cys	p.G450C	ENST00000298229	NM_001567.3	450	Ggt/Tgt																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942624	71942624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	201	452	1	ENST00000298229.2:c.1580C>T	p.Thr527Met	p.T527M	ENST00000298229	NM_001567.3	527	aCg/aTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948508	71948508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	225	497	0	ENST00000298229.2:c.3220G>T	p.Gly1074Trp	p.G1074W	ENST00000298229	NM_001567.3	1074	Ggg/Tgg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94194193	94194193	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	124	227	0	ENST00000323929.3:c.1235T>C	p.Ile412Thr	p.I412T	ENST00000323929	NM_005591.3	412	aTc/aCc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204870	94204870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	127	277	0	ENST00000323929.3:c.715G>A	p.Asp239Asn	p.D239N	ENST00000323929	NM_005591.3	239	Gat/Aat																																																																														
PGR	0	MSKCC	GRCh37	11	100998565	100998565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	205	389	1	ENST00000325455.5:c.1237G>T	p.Ala413Ser	p.A413S	ENST00000325455	NM_001202474.3	413	Gcc/Tcc																																																																														
ATM	0	MSKCC	GRCh37	11	108190748	108190748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	159	271	0	ENST00000278616.4:c.6415G>A	p.Glu2139Lys	p.E2139K	ENST00000278616	NM_000051.3	2139	Gaa/Aaa																																																																														
ATM	0	MSKCC	GRCh37	11	108235896	108235896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	133	247	1	ENST00000278616.4:c.8938C>A	p.Leu2980Ile	p.L2980I	ENST00000278616	NM_000051.3	2980	Ctt/Att																																																																														
KMT2A	0	MSKCC	GRCh37	11	118348681	118348681	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	89	144	0	ENST00000534358.1:c.3335-1G>T		p.X1112_splice	ENST00000534358	NM_005933.3	1112																																																																															
CHEK1	0	MSKCC	GRCh37	11	125514435	125514435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	95	277	0	ENST00000428830.2:c.1130T>C	p.Met377Thr	p.M377T	ENST00000428830	NM_001114121.2	377	aTg/aCg																																																																														
KDM5A	0	MSKCC	GRCh37	12	416751	416751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	82	170	0	ENST00000399788.2:c.3799G>T	p.Asp1267Tyr	p.D1267Y	ENST00000399788	NM_001042603.1	1267	Gat/Tat																																																																														
ETV6	0	MSKCC	GRCh37	12	12006463	12006463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	224	404	1	ENST00000396373.4:c.431C>T	p.Pro144Leu	p.P144L	ENST00000396373	NM_001987.4	144	cCg/cTg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18446852	18446852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	119	210	0	ENST00000266497.5:c.937G>T	p.Asp313Tyr	p.D313Y	ENST00000266497		313	Gat/Tat																																																																														
RECQL	0	MSKCC	GRCh37	12	21643203	21643203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	249	484	0	ENST00000421138.2:c.324G>T	p.Glu108Asp	p.E108D	ENST00000421138		108	gaG/gaT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49430997	49430997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	130	284	0	ENST00000301067.7:c.10142C>T	p.Pro3381Leu	p.P3381L	ENST00000301067	NM_003482.3	3381	cCc/cTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433620	49433620	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	271	521	1	ENST00000301067.7:c.7933C>T	p.Arg2645Ter	p.R2645*	ENST00000301067	NM_003482.3	2645	Cga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438643	49438643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	206	400	0	ENST00000301067.7:c.4847G>A	p.Gly1616Glu	p.G1616E	ENST00000301067	NM_003482.3	1616	gGa/gAa																																																																														
MDM2	0	MSKCC	GRCh37	12	69203052	69203052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	163	309	0	ENST00000462284.1:c.79G>A	p.Ala27Thr	p.A27T	ENST00000462284	NM_002392.5	27	Gct/Act																																																																														
SH2B3	0	MSKCC	GRCh37	12	111886089	111886089	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	146	290	0	ENST00000341259.2:c.1711C>T	p.Gln571Ter	p.Q571*	ENST00000341259	NM_005475.2	571	Cag/Tag																																																																														
MSI1	0	MSKCC	GRCh37	12	120785294	120785294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	164	344	0	ENST00000257552.2:c.814C>T	p.Pro272Ser	p.P272S	ENST00000257552	NM_002442.3	272	Cca/Tca																																																																														
POLE	0	MSKCC	GRCh37	12	133201565	133201565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	133	352	0	ENST00000320574.5:c.6673C>T	p.Arg2225Cys	p.R2225C	ENST00000320574	NM_006231.2	2225	Cgc/Tgc																																																																														
POLE	0	MSKCC	GRCh37	12	133249426	133249426	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	90	226	0	ENST00000320574.5:c.1474-1G>T		p.X492_splice	ENST00000320574	NM_006231.2	492																																																																															
POLE	0	MSKCC	GRCh37	12	133252328	133252328	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	144	293	0	ENST00000320574.5:c.1099T>G	p.Phe367Val	p.F367V	ENST00000320574	NM_006231.2	367	Ttt/Gtt																																																																														
FLT3	0	MSKCC	GRCh37	13	28597589	28597589	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	189	449	0	ENST00000241453.7:c.2316A>C	p.Lys772Asn	p.K772N	ENST00000241453	NM_004119.2	772	aaA/aaC																																																																														
BRCA2	0	MSKCC	GRCh37	13	32900240	32900240	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	107	222	0	ENST00000380152.3:c.428C>A	p.Pro143His	p.P143H	ENST00000380152		143	cCt/cAt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913665	32913665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	113	265	0	ENST00000380152.3:c.5173G>A	p.Ala1725Thr	p.A1725T	ENST00000380152		1725	Gct/Act																																																																														
BRCA2	0	MSKCC	GRCh37	13	32936799	32936799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	122	272	0	ENST00000380152.3:c.7945C>A	p.Pro2649Thr	p.P2649T	ENST00000380152		2649	Cca/Aca																																																																														
BRCA2	0	MSKCC	GRCh37	13	32950810	32950810	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	132	221	0	ENST00000380152.3:c.8636A>G	p.Asn2879Ser	p.N2879S	ENST00000380152		2879	aAc/aGc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972571	32972571	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	163	315	0	ENST00000380152.3:c.9921A>C	p.Lys3307Asn	p.K3307N	ENST00000380152		3307	aaA/aaC																																																																														
RB1	0	MSKCC	GRCh37	13	48934264	48934264	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	121	285	0	ENST00000267163.4:c.718+1G>T		p.X240_splice	ENST00000267163	NM_000321.2	240																																																																															
RB1	0	MSKCC	GRCh37	13	49037934	49037934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	140	322	0	ENST00000267163.4:c.2174T>C	p.Val725Ala	p.V725A	ENST00000267163	NM_000321.2	725	gTa/gCa																																																																														
IRS2	0	MSKCC	GRCh37	13	110435436	110435436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	217	425	0	ENST00000375856.3:c.2965C>A	p.Pro989Thr	p.P989T	ENST00000375856	NM_003749.2	989	Cct/Act																																																																														
IRS2	0	MSKCC	GRCh37	13	110436654	110436654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	245	520	1	ENST00000375856.3:c.1747C>T	p.Arg583Trp	p.R583W	ENST00000375856	NM_003749.2	583	Cgg/Tgg																																																																														
IRS2	0	MSKCC	GRCh37	13	110436947	110436947	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	73	159	0	ENST00000375856.3:c.1454G>T	p.Ser485Ile	p.S485I	ENST00000375856	NM_003749.2	485	aGc/aTc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30132946	30132946	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	174	331	0	ENST00000331968.5:c.655T>G	p.Ser219Ala	p.S219A	ENST00000331968	NM_002742.2	219	Tct/Gct																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988463	36988463	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs201631950		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	205	304	0	ENST00000354822.5:c.190C>A	p.Leu64Ile	p.L64I	ENST00000354822	NM_001079668.2	64	Ctc/Atc																																																																														
TSHR	0	MSKCC	GRCh37	14	81574778	81574778	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	143	290	0	ENST00000298171.2:c.674A>G	p.Tyr225Cys	p.Y225C	ENST00000298171	NM_000369.2	225	tAc/tGc																																																																														
TSHR	0	MSKCC	GRCh37	14	81606120	81606120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	203	397	0	ENST00000298171.2:c.790C>A	p.Pro264Thr	p.P264T	ENST00000298171	NM_000369.2	264	Cca/Aca																																																																														
GREM1	0	MSKCC	GRCh37	15	33022974	33022974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	114	288	0	ENST00000300177.4:c.83G>A	p.Gly28Glu	p.G28E	ENST00000300177	NM_001191322.1	28	gGg/gAg																																																																														
MGA	0	MSKCC	GRCh37	15	42035287	42035287	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	177	336	1	ENST00000219905.7:c.5129T>C	p.Val1710Ala	p.V1710A	ENST00000219905	NM_001164273.1	1710	gTg/gCg																																																																														
MGA	0	MSKCC	GRCh37	15	42054497	42054497	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	165	341	0	ENST00000219905.7:c.7681A>T	p.Met2561Leu	p.M2561L	ENST00000219905	NM_001164273.1	2561	Atg/Ttg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43766946	43766946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	100	239	0	ENST00000382044.4:c.1105G>A	p.Ala369Thr	p.A369T	ENST00000382044	NM_001141980.1	369	Gct/Act																																																																														
SMAD3	0	MSKCC	GRCh37	15	67477188	67477188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	171	266	0	ENST00000327367.4:c.995G>A	p.Cys332Tyr	p.C332Y	ENST00000327367	NM_005902.3	332	tGc/tAc																																																																														
AXIN1	0	MSKCC	GRCh37	16	354413	354413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150141520		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	179	381	0	ENST00000262320.3:c.1145G>A	p.Arg382His	p.R382H	ENST00000262320	NM_003502.3	382	cGc/cAc																																																																														
NTHL1	0	MSKCC	GRCh37	16	2094692	2094692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	217	426	0	ENST00000219066.1:c.488G>A	p.Ser163Asn	p.S163N	ENST00000219066	NM_002528.5	163	aGc/aAc																																																																														
TSC2	0	MSKCC	GRCh37	16	2126499	2126499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	206	371	0	ENST00000219476.3:c.2750G>A	p.Arg917Gln	p.R917Q	ENST00000219476	NM_000548.3	917	cGg/cAg																																																																														
TSC2	0	MSKCC	GRCh37	16	2138115	2138115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	208	443	0	ENST00000219476.3:c.5135C>T	p.Ala1712Val	p.A1712V	ENST00000219476	NM_000548.3	1712	gCc/gTc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2213991	2213991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	184	360	2	ENST00000326181.6:c.70G>A	p.Val24Ile	p.V24I	ENST00000326181	NM_032271.2	24	Gtc/Atc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2223810	2223810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	203	438	0	ENST00000326181.6:c.1108G>A	p.Ala370Thr	p.A370T	ENST00000326181	NM_032271.2	370	Gcg/Acg																																																																														
TRAF7	0	MSKCC	GRCh37	16	2225338	2225338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	228	445	0	ENST00000326181.6:c.1423A>G	p.Ile475Val	p.I475V	ENST00000326181	NM_032271.2	475	Atc/Gtc																																																																														
PDPK1	0	MSKCC	GRCh37	16	2636771	2636771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	187	342	1	ENST00000342085.4:c.1220G>T	p.Arg407Met	p.R407M	ENST00000342085	NM_002613.4	407	aGg/aTg																																																																														
SLX4	0	MSKCC	GRCh37	16	3633258	3633258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	231	599	0	ENST00000294008.3:c.4993C>T	p.Pro1665Ser	p.P1665S	ENST00000294008	NM_032444.2	1665	Ccc/Tcc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923431	9923431	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	145	426	0	ENST00000330684.3:c.1856T>C	p.Val619Ala	p.V619A	ENST00000330684	NM_001134407.1	619	gTc/gCc																																																																														
SOCS1	0	MSKCC	GRCh37	16	11349302	11349302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	157	359	2	ENST00000332029.2:c.34G>A	p.Ala12Thr	p.A12T	ENST00000332029	NM_003745.1	12	Gca/Aca																																																																														
ERCC4	0	MSKCC	GRCh37	16	14028108	14028108	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	204	473	0	ENST00000311895.7:c.1162T>G	p.Leu388Val	p.L388V	ENST00000311895	NM_005236.2	388	Tta/Gta																																																																														
CYLD	0	MSKCC	GRCh37	16	50785726	50785726	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	182	381	0	ENST00000398568.2:c.716A>C	p.Lys239Thr	p.K239T	ENST00000398568	NM_001042412.1	239	aAg/aCg																																																																														
NUP93	0	MSKCC	GRCh37	16	56867177	56867177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	195	346	0	ENST00000308159.5:c.1396C>A	p.Leu466Met	p.L466M	ENST00000308159	NM_014669.4	466	Ctg/Atg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822199	72822199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	196	449	0	ENST00000268489.5:c.9976G>A	p.Ala3326Thr	p.A3326T	ENST00000268489	NM_006885.3	3326	Gcc/Acc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991395	72991395	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148618101		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	198	448	1	ENST00000268489.5:c.2650G>A	p.Ala884Thr	p.A884T	ENST00000268489	NM_006885.3	884	Gcc/Acc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89341503	89341503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	149	390	0	ENST00000301030.4:c.7567C>T	p.Arg2523Trp	p.R2523W	ENST00000301030	NM_001256183.1	2523	Cgg/Tgg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346291	89346291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	62	209	1	ENST00000301030.4:c.6659C>T	p.Ala2220Val	p.A2220V	ENST00000301030	NM_001256183.1	2220	gCg/gTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348595	89348595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	208	541	0	ENST00000301030.4:c.4355C>T	p.Ala1452Val	p.A1452V	ENST00000301030	NM_001256183.1	1452	gCc/gTc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351763	89351763	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145699896		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	264	546	1	ENST00000301030.4:c.1187C>T	p.Thr396Met	p.T396M	ENST00000301030	NM_001256183.1	396	aCg/aTg																																																																														
FANCA	0	MSKCC	GRCh37	16	89874721	89874721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	236	434	0	ENST00000389301.3:c.577C>A	p.Leu193Met	p.L193M	ENST00000389301	NM_000135.2	193	Ctg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7578277	7578277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	217	397	0	ENST00000269305.4:c.572C>A	p.Pro191His	p.P191H	ENST00000269305	NM_001126112.2	191	cCt/cAt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7976980	7976980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	178	370	0	ENST00000319144.4:c.1750G>T	p.Gly584Cys	p.G584C	ENST00000319144	NM_001139.2	584	Ggc/Tgc																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7990615	7990615	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs143526675		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	122	271	0	ENST00000319144.4:c.146C>T	p.Ala49Val	p.A49V	ENST00000319144	NM_001139.2	49	gCg/gTg																																																																														
AURKB	0	MSKCC	GRCh37	17	8108559	8108559	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	194	435	0	ENST00000585124.1:c.836A>C	p.Asn279Thr	p.N279T	ENST00000585124	NM_004217.3	279	aAc/aCc																																																																														
FLCN	0	MSKCC	GRCh37	17	17124919	17124919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	148	334	0	ENST00000285071.4:c.803G>A	p.Arg268Gln	p.R268Q	ENST00000285071	NM_144997.5	268	cGg/cAg																																																																														
NF1	0	MSKCC	GRCh37	17	29546096	29546096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	177	337	0	ENST00000358273.4:c.1601C>A	p.Pro534His	p.P534H	ENST00000358273	NM_001042492.2	534	cCt/cAt																																																																														
RAD51D	0	MSKCC	GRCh37	17	33446632	33446632	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	138	318	0	ENST00000335858.7:c.1A>G	p.Met1?	p.M1?	ENST00000335858	NM_133629.2	1	Atg/Gtg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37883983	37883983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	223	384	1	ENST00000269571.5:c.3454C>T	p.Pro1152Ser	p.P1152S	ENST00000269571		1152	Ccc/Tcc																																																																														
RAD51C	0	MSKCC	GRCh37	17	56780639	56780639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	185	348	0	ENST00000337432.4:c.654G>T	p.Glu218Asp	p.E218D	ENST00000337432	NM_058216.2	218	gaG/gaT																																																																														
PPM1D	0	MSKCC	GRCh37	17	58725369	58725369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	176	370	0	ENST00000305921.3:c.943G>A	p.Gly315Arg	p.G315R	ENST00000305921	NM_003620.3	315	Gga/Aga																																																																														
AXIN2	0	MSKCC	GRCh37	17	63526105	63526105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	206	337	0	ENST00000307078.5:c.2521C>T	p.Arg841Trp	p.R841W	ENST00000307078	NM_004655.3	841	Cgg/Tgg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63526219	63526219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	165	285	0	ENST00000307078.5:c.2407T>C	p.Tyr803His	p.Y803H	ENST00000307078	NM_004655.3	803	Tat/Cat																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66511581	66511581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	124	264	0	ENST00000358598.2:c.41G>A	p.Ser14Asn	p.S14N	ENST00000358598	NM_212471.2	14	aGc/aAc																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66526082	66526082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	147	278	0	ENST00000358598.2:c.913C>T	p.Arg305Cys	p.R305C	ENST00000358598	NM_212471.2	305	Cgt/Tgt																																																																														
SOX9	0	MSKCC	GRCh37	17	70117684	70117684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	211	432	0	ENST00000245479.2:c.152A>G	p.Asn51Ser	p.N51S	ENST00000245479	NM_000346.3	51	aAc/aGc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78897382	78897382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	175	359	1	ENST00000306801.3:c.2717C>A	p.Pro906Gln	p.P906Q	ENST00000306801	NM_020761.2	906	cCg/cAg																																																																														
YES1	0	MSKCC	GRCh37	18	751704	751704	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	121	282	0	ENST00000314574.4:c.371+1G>A		p.X124_splice	ENST00000314574	NM_005433.3	124																																																																															
PIK3C3	0	MSKCC	GRCh37	18	39550371	39550371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	125	298	0	ENST00000262039.4:c.482G>A	p.Gly161Asp	p.G161D	ENST00000262039	NM_002647.2	161	gGc/gAc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39617657	39617657	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	90	218	0	ENST00000262039.4:c.1841G>A	p.Ser614Asn	p.S614N	ENST00000262039	NM_002647.2	614	aGt/aAt																																																																														
STK11	0	MSKCC	GRCh37	19	1207072	1207072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	223	497	0	ENST00000326873.7:c.160C>A	p.Leu54Met	p.L54M	ENST00000326873	NM_000455.4	54	Ctg/Atg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2199928	2199928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	185	445	1	ENST00000398665.3:c.697G>A	p.Ala233Thr	p.A233T	ENST00000398665	NM_032482.2	233	Gcc/Acc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2207668	2207668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	177	367	0	ENST00000398665.3:c.952G>A	p.Asp318Asn	p.D318N	ENST00000398665	NM_032482.2	318	Gac/Aac																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4099303	4099303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	184	455	0	ENST00000262948.5:c.815C>T	p.Ala272Val	p.A272V	ENST00000262948	NM_030662.3	272	gCc/gTc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212088	5212088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	174	417	0	ENST00000357368.4:c.4943C>T	p.Ala1648Val	p.A1648V	ENST00000357368	NM_002850.3	1648	gCc/gTc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214574	5214574	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	157	339	0	ENST00000357368.4:c.4492C>T	p.Arg1498Trp	p.R1498W	ENST00000357368	NM_002850.3	1498	Cgg/Tgg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10246438	10246438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	173	466	0	ENST00000340748.4:c.4699G>A	p.Gly1567Ser	p.G1567S	ENST00000340748		1567	Ggc/Agc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10248654	10248654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	133	289	0	ENST00000340748.4:c.4099G>T	p.Val1367Leu	p.V1367L	ENST00000340748		1367	Gtg/Ttg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097158	11097158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	166	405	0	ENST00000344626.4:c.649A>G	p.Met217Val	p.M217V	ENST00000344626	NM_003072.3	217	Atg/Gtg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11101977	11101977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	197	399	0	ENST00000344626.4:c.1397G>A	p.Arg466His	p.R466H	ENST00000344626	NM_003072.3	466	cGc/cAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141422	11141422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	213	335	0	ENST00000344626.4:c.3399G>T	p.Glu1133Asp	p.E1133D	ENST00000344626	NM_003072.3	1133	gaG/gaT																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15285167	15285167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	281	539	2	ENST00000263388.2:c.4448G>A	p.Arg1483His	p.R1483H	ENST00000263388	NM_000435.2	1483	cGc/cAc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302865	15302865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	196	539	0	ENST00000263388.2:c.585G>T	p.Glu195Asp	p.E195D	ENST00000263388	NM_000435.2	195	gaG/gaT																																																																														
BRD4	0	MSKCC	GRCh37	19	15366389	15366389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	79	205	0	ENST00000263377.2:c.1766C>T	p.Ala589Val	p.A589V	ENST00000263377	NM_058243.2	589	gCg/gTg																																																																														
JAK3	0	MSKCC	GRCh37	19	17945726	17945726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	185	392	0	ENST00000458235.1:c.2134G>T	p.Gly712Cys	p.G712C	ENST00000458235	NM_000215.3	712	Ggc/Tgc																																																																														
JAK3	0	MSKCC	GRCh37	19	17954613	17954613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	223	509	0	ENST00000458235.1:c.281G>A	p.Ser94Asn	p.S94N	ENST00000458235	NM_000215.3	94	aGc/aAc																																																																														
UPF1	0	MSKCC	GRCh37	19	18976909	18976909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	164	389	0	ENST00000262803.5:c.3294C>A	p.Asp1098Glu	p.D1098E	ENST00000262803	NM_002911.3	1098	gaC/gaA																																																																														
UPF1	0	MSKCC	GRCh37	19	18976943	18976943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	157	394	0	ENST00000262803.5:c.3328G>A	p.Gly1110Ser	p.G1110S	ENST00000262803	NM_002911.3	1110	Ggc/Agc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19256641	19256641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	143	401	0	ENST00000162023.5:c.1072C>T	p.Arg358Cys	p.R358C	ENST00000162023		358	Cgc/Tgc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212371	36212371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	186	401	1	ENST00000222270.7:c.2122G>A	p.Ala708Thr	p.A708T	ENST00000222270	NM_014727.1	708	Gcc/Acc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223009	36223009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	250	493	0	ENST00000222270.7:c.5638G>A	p.Val1880Ile	p.V1880I	ENST00000222270	NM_014727.1	1880	Gtc/Atc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224588	36224588	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	208	503	0	ENST00000222270.7:c.7049+1G>A		p.X2350_splice	ENST00000222270	NM_014727.1	2350																																																																															
AKT2	0	MSKCC	GRCh37	19	40743884	40743884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	148	297	0	ENST00000392038.2:c.823G>A	p.Asp275Asn	p.D275N	ENST00000392038	NM_001626.4	275	Gac/Aac																																																																														
CD79A	0	MSKCC	GRCh37	19	42383069	42383069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	99	234	0	ENST00000221972.3:c.89G>A	p.Cys30Tyr	p.C30Y	ENST00000221972	NM_021601.3	30	tGc/tAc																																																																														
ERF	0	MSKCC	GRCh37	19	42752786	42752786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	214	452	1	ENST00000222329.4:c.1478G>A	p.Arg493His	p.R493H	ENST00000222329	NM_006494.2	493	cGc/cAc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45868157	45868157	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	188	522	0	ENST00000391945.4:c.533A>C	p.Asp178Ala	p.D178A	ENST00000391945	NM_000400.3	178	gAt/gCt																																																																														
ERCC2	0	MSKCC	GRCh37	19	45872377	45872377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	202	405	0	ENST00000391945.4:c.134G>A	p.Gly45Asp	p.G45D	ENST00000391945	NM_000400.3	45	gGc/gAc																																																																														
POLD1	0	MSKCC	GRCh37	19	50905041	50905041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	113	271	0	ENST00000440232.2:c.323C>T	p.Ala108Val	p.A108V	ENST00000440232	NM_002691.3	108	gCg/gTg																																																																														
POLD1	0	MSKCC	GRCh37	19	50916693	50916693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	166	345	0	ENST00000440232.2:c.2165G>A	p.Gly722Glu	p.G722E	ENST00000440232	NM_002691.3	722	gGg/gAg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52693428	52693428	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	191	423	2	ENST00000322088.6:c.78+1G>A		p.X26_splice	ENST00000322088	NM_014225.5	26																																																																															
PPP2R1A	0	MSKCC	GRCh37	19	52705233	52705233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	131	312	0	ENST00000322088.6:c.115G>A	p.Ala39Thr	p.A39T	ENST00000322088	NM_014225.5	39	Gcc/Acc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716036	52716036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	192	432	0	ENST00000322088.6:c.601G>A	p.Val201Ile	p.V201I	ENST00000322088	NM_014225.5	201	Gtc/Atc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716069	52716069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	198	473	0	ENST00000322088.6:c.634C>A	p.Leu212Met	p.L212M	ENST00000322088	NM_014225.5	212	Ctg/Atg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52725363	52725363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	132	233	1	ENST00000322088.6:c.1530G>T	p.Glu510Asp	p.E510D	ENST00000322088	NM_014225.5	510	gaG/gaT																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52725461	52725461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	173	384	0	ENST00000322088.6:c.1628C>A	p.Ser543Tyr	p.S543Y	ENST00000322088	NM_014225.5	543	tCt/tAt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469587	25469587	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	172	441	0	ENST00000264709.3:c.1181A>G	p.Asp394Gly	p.D394G	ENST00000264709	NM_175629.2	394	gAc/gGc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25964989	25964989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	122	257	1	ENST00000435504.4:c.4217C>T	p.Ala1406Val	p.A1406V	ENST00000435504		1406	gCc/gTc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25973187	25973187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	113	225	0	ENST00000435504.4:c.1238C>A	p.Pro413His	p.P413H	ENST00000435504		413	cCt/cAt																																																																														
ALK	0	MSKCC	GRCh37	2	29443646	29443646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	200	390	0	ENST00000389048.3:c.3571C>T	p.Pro1191Ser	p.P1191S	ENST00000389048	NM_004304.4	1191	Ccc/Tcc																																																																														
ALK	0	MSKCC	GRCh37	2	29519846	29519846	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	162	363	0	ENST00000389048.3:c.1725G>T	p.Lys575Asn	p.K575N	ENST00000389048	NM_004304.4	575	aaG/aaT																																																																														
SOS1	0	MSKCC	GRCh37	2	39294807	39294807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	163	342	1	ENST00000402219.2:c.175C>A	p.Leu59Ile	p.L59I	ENST00000402219	NM_005633.3	59	Cta/Ata																																																																														
EPAS1	0	MSKCC	GRCh37	2	46574157	46574157	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	204	393	0	ENST00000263734.3:c.172C>T	p.Arg58Ter	p.R58*	ENST00000263734	NM_001430.4	58	Cga/Tga																																																																														
MSH6	0	MSKCC	GRCh37	2	48026414	48026414	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	136	273	0	ENST00000234420.5:c.1292A>C	p.Lys431Thr	p.K431T	ENST00000234420	NM_000179.2	431	aAa/aCa																																																																														
MSH6	0	MSKCC	GRCh37	2	48026572	48026572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	122	248	0	ENST00000234420.5:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000234420	NM_000179.2	484	Gaa/Aaa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99162453	99162453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	121	235	0	ENST00000074304.5:c.971G>T	p.Ser324Ile	p.S324I	ENST00000074304	NM_001134224.1	324	aGt/aTt																																																																														
INPP4A	0	MSKCC	GRCh37	2	99185114	99185114	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	127	235	0	ENST00000074304.5:c.2516A>G	p.Glu839Gly	p.E839G	ENST00000074304	NM_001134224.1	839	gAa/gGa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99189332	99189332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	168	293	0	ENST00000074304.5:c.2588G>A	p.Gly863Asp	p.G863D	ENST00000074304	NM_001134224.1	863	gGt/gAt																																																																														
ERCC3	0	MSKCC	GRCh37	2	128038135	128038135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	155	282	0	ENST00000285398.2:c.1415G>A	p.Arg472His	p.R472H	ENST00000285398	NM_000122.1	472	cGc/cAc																																																																														
CXCR4	0	MSKCC	GRCh37	2	136872714	136872714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	121	289	0	ENST00000241393.3:c.784G>A	p.Asp262Asn	p.D262N	ENST00000241393	NM_003467.2	262	Gac/Aac																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095539	178095539	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	105	212	0	ENST00000397062.3:c.1792A>G	p.Lys598Glu	p.K598E	ENST00000397062	NM_006164.4	598	Aag/Gag																																																																														
PMS1	0	MSKCC	GRCh37	2	190656635	190656635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	114	227	3	ENST00000441310.2:c.100G>T	p.Asp34Tyr	p.D34Y	ENST00000441310	NM_000534.4	34	Gat/Tat																																																																														
PMS1	0	MSKCC	GRCh37	2	190660559	190660559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	122	251	0	ENST00000441310.2:c.197C>T	p.Ala66Val	p.A66V	ENST00000441310	NM_000534.4	66	gCa/gTa																																																																														
PMS1	0	MSKCC	GRCh37	2	190660669	190660669	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	130	252	0	ENST00000441310.2:c.307A>G	p.Ile103Val	p.I103V	ENST00000441310	NM_000534.4	103	Ata/Gta																																																																														
PMS1	0	MSKCC	GRCh37	2	190732536	190732536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	114	216	0	ENST00000441310.2:c.2354G>A	p.Gly785Glu	p.G785E	ENST00000441310	NM_000534.4	785	gGa/gAa																																																																														
CASP8	0	MSKCC	GRCh37	2	202149587	202149587	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	122	265	0	ENST00000358485.4:c.1028A>G	p.His343Arg	p.H343R	ENST00000358485	NM_001080125.1	343	cAc/cGc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212989579	212989579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	118	167	0	ENST00000342788.4:c.132G>T	p.Gln44His	p.Q44H	ENST00000342788	NM_005235.2	44	caG/caT																																																																														
CUL3	0	MSKCC	GRCh37	2	225346651	225346651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	150	296	0	ENST00000264414.4:c.1987G>A	p.Asp663Asn	p.D663N	ENST00000264414	NM_003590.4	663	Gat/Aat																																																																														
CUL3	0	MSKCC	GRCh37	2	225378351	225378351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	100	178	0	ENST00000264414.4:c.544G>A	p.Ala182Thr	p.A182T	ENST00000264414	NM_003590.4	182	Gca/Aca																																																																														
PDCD1	0	MSKCC	GRCh37	2	242800974	242800974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	159	397	1	ENST00000334409.5:c.17C>T	p.Ala6Val	p.A6V	ENST00000334409	NM_005018.2	6	gCg/gTg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31020692	31020692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	125	283	0	ENST00000375687.4:c.989C>A	p.Thr330Asn	p.T330N	ENST00000375687	NM_015338.5	330	aCt/aAt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021181	31021181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	219	353	2	ENST00000375687.4:c.1180C>T	p.Arg394Cys	p.R394C	ENST00000375687	NM_015338.5	394	Cgt/Tgt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024768	31024768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	175	319	0	ENST00000375687.4:c.4253G>T	p.Gly1418Val	p.G1418V	ENST00000375687	NM_015338.5	1418	gGg/gTg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31376760	31376760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	157	410	0	ENST00000328111.2:c.755G>A	p.Arg252Gln	p.R252Q	ENST00000328111	NM_006892.3	252	cGa/cAa																																																																														
TOP1	0	MSKCC	GRCh37	20	39721152	39721152	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	201	343	0	ENST00000361337.2:c.655T>G	p.Phe219Val	p.F219V	ENST00000361337	NM_003286.2	219	Ttc/Gtc																																																																														
TOP1	0	MSKCC	GRCh37	20	39729934	39729934	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	171	355	0	ENST00000361337.2:c.1249A>G	p.Thr417Ala	p.T417A	ENST00000361337	NM_003286.2	417	Aca/Gca																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790071	40790071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	167	425	0	ENST00000373198.4:c.2660C>T	p.Ala887Val	p.A887V	ENST00000373198	NM_133170.3	887	gCc/gTc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62317222	62317222	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	177	358	0	ENST00000508582.2:c.1417C>T	p.Arg473Ter	p.R473*	ENST00000508582		473	Cga/Tga																																																																														
RTEL1	0	MSKCC	GRCh37	20	62323135	62323135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	222	459	0	ENST00000508582.2:c.2669G>T	p.Arg890Met	p.R890M	ENST00000508582		890	aGg/aTg																																																																														
ERG	0	MSKCC	GRCh37	21	39755623	39755623	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	173	329	0	ENST00000288319.7:c.1142T>G	p.Val381Gly	p.V381G	ENST00000288319	NM_182918.3	381	gTc/gGc																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45655419	45655419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	208	470	1	ENST00000407780.3:c.433G>A	p.Ala145Thr	p.A145T	ENST00000407780	NM_001283052.1	145	Gcc/Acc																																																																														
CRKL	0	MSKCC	GRCh37	22	21288246	21288246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200712124		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	169	413	2	ENST00000354336.3:c.491G>A	p.Arg164Gln	p.R164Q	ENST00000354336	NM_005207.3	164	cGg/cAg																																																																														
NF2	0	MSKCC	GRCh37	22	30035186	30035186	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	149	308	0	ENST00000338641.4:c.348T>G	p.His116Gln	p.H116Q	ENST00000338641	NM_000268.3	116	caT/caG																																																																														
EP300	0	MSKCC	GRCh37	22	41574545	41574545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	204	437	0	ENST00000263253.7:c.6830C>A	p.Pro2277His	p.P2277H	ENST00000263253	NM_001429.3	2277	cCc/cAc																																																																														
PPARG	0	MSKCC	GRCh37	3	12475528	12475528	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	146	347	0	ENST00000287820.6:c.1402A>G	p.Thr468Ala	p.T468A	ENST00000287820	NM_015869.4	468	Aca/Gca																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30686388	30686388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	89	239	0	ENST00000359013.4:c.319G>A	p.Glu107Lys	p.E107K	ENST00000359013	NM_001024847.2	107	Gaa/Aaa																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713298	30713298	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	166	248	0	ENST00000359013.4:c.698A>C	p.Lys233Thr	p.K233T	ENST00000359013	NM_001024847.2	233	aAg/aCg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713801	30713801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	162	309	0	ENST00000359013.4:c.1201G>A	p.Val401Met	p.V401M	ENST00000359013	NM_001024847.2	401	Gtg/Atg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41275751	41275751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	149	335	0	ENST00000349496.5:c.1646G>A	p.Arg549His	p.R549H	ENST00000349496	NM_001904.3	549	cGc/cAc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41280637	41280637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	164	366	0	ENST00000349496.5:c.2150G>A	p.Arg717His	p.R717H	ENST00000349496	NM_001904.3	717	cGt/cAt																																																																														
SETD2	0	MSKCC	GRCh37	3	47125328	47125328	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs189529024		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	132	230	0	ENST00000409792.3:c.5942A>G	p.Gln1981Arg	p.Q1981R	ENST00000409792	NM_014159.6	1981	cAa/cGa																																																																														
SETD2	0	MSKCC	GRCh37	3	47163098	47163098	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	100	248	0	ENST00000409792.3:c.3028G>T	p.Glu1010Ter	p.E1010*	ENST00000409792	NM_014159.6	1010	Gaa/Taa																																																																														
MST1R	0	MSKCC	GRCh37	3	49936050	49936050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	225	434	0	ENST00000296474.3:c.1620G>T	p.Trp540Cys	p.W540C	ENST00000296474	NM_002447.2	540	tgG/tgT																																																																														
BAP1	0	MSKCC	GRCh37	3	52440346	52440346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	191	327	0	ENST00000460680.1:c.706G>A	p.Asp236Asn	p.D236N	ENST00000460680	NM_004656.3	236	Gac/Aac																																																																														
BAP1	0	MSKCC	GRCh37	3	52443582	52443582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	157	313	0	ENST00000460680.1:c.110G>T	p.Ser37Ile	p.S37I	ENST00000460680	NM_004656.3	37	aGc/aTc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52651348	52651348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	147	342	0	ENST00000394830.3:c.1748A>C	p.Glu583Ala	p.E583A	ENST00000394830	NM_018313.4	583	gAa/gCa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89498508	89498508	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	90	212	0	ENST00000336596.2:c.2480A>T	p.Glu827Val	p.E827V	ENST00000336596	NM_005233.5	827	gAg/gTg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670437	134670437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	128	315	0	ENST00000398015.3:c.348G>T	p.Glu116Asp	p.E116D	ENST00000398015	NM_004441.4	116	gaG/gaT																																																																														
EPHB1	0	MSKCC	GRCh37	3	134898780	134898780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	94	298	0	ENST00000398015.3:c.1838A>G	p.Glu613Gly	p.E613G	ENST00000398015	NM_004441.4	613	gAg/gGg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911432	134911432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	123	359	0	ENST00000398015.3:c.1897G>A	p.Val633Met	p.V633M	ENST00000398015	NM_004441.4	633	Gtg/Atg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138413742	138413742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	103	240	2	ENST00000289153.2:c.1778C>T	p.Ala593Val	p.A593V	ENST00000289153	NM_006219.2	593	gCg/gTg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138423310	138423310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	182	359	0	ENST00000289153.2:c.1556C>A	p.Ala519Glu	p.A519E	ENST00000289153	NM_006219.2	519	gCa/gAa																																																																														
ATR	0	MSKCC	GRCh37	3	142171992	142171992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	162	387	0	ENST00000350721.4:c.7739C>A	p.Thr2580Asn	p.T2580N	ENST00000350721	NM_001184.3	2580	aCt/aAt																																																																														
ATR	0	MSKCC	GRCh37	3	142279152	142279152	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	185	321	0	ENST00000350721.4:c.1494A>C	p.Gln498His	p.Q498H	ENST00000350721	NM_001184.3	498	caA/caC																																																																														
ATR	0	MSKCC	GRCh37	3	142281651	142281651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	147	308	0	ENST00000350721.4:c.593G>A	p.Ser198Asn	p.S198N	ENST00000350721	NM_001184.3	198	aGt/aAt																																																																														
SOX2	0	MSKCC	GRCh37	3	181430591	181430591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	152	267	0	ENST00000325404.1:c.443G>A	p.Gly148Asp	p.G148D	ENST00000325404	NM_003106.3	148	gGc/gAc																																																																														
SOX2	0	MSKCC	GRCh37	3	181430869	181430869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	271	526	1	ENST00000325404.1:c.721G>T	p.Gly241Cys	p.G241C	ENST00000325404	NM_003106.3	241	Ggt/Tgt																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185146718	185146718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	177	419	0	ENST00000265026.3:c.349A>G	p.Lys117Glu	p.K117E	ENST00000265026	NM_004721.4	117	Aag/Gag																																																																														
TP63	0	MSKCC	GRCh37	3	189607189	189607189	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	200	470	0	ENST00000264731.3:c.1568A>C	p.Gln523Pro	p.Q523P	ENST00000264731	NM_003722.4	523	cAg/cCg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920295	1920295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	199	416	1	ENST00000382891.5:c.1355G>T	p.Arg452Met	p.R452M	ENST00000382891	NM_133335.3	452	aGg/aTg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957835	1957835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	212	407	0	ENST00000382891.5:c.2801C>T	p.Ala934Val	p.A934V	ENST00000382891	NM_133335.3	934	gCg/gTg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55138639	55138639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	163	315	0	ENST00000257290.5:c.1316G>A	p.Gly439Asp	p.G439D	ENST00000257290	NM_006206.4	439	gGc/gAc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55144627	55144627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	120	249	0	ENST00000257290.5:c.2101C>T	p.Pro701Ser	p.P701S	ENST00000257290	NM_006206.4	701	Cca/Tca																																																																														
KIT	0	MSKCC	GRCh37	4	55561755	55561755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	96	243	0	ENST00000288135.5:c.145C>T	p.Arg49Cys	p.R49C	ENST00000288135	NM_000222.2	49	Cgc/Tgc																																																																														
KIT	0	MSKCC	GRCh37	4	55594075	55594075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	113	235	0	ENST00000288135.5:c.1861G>A	p.Ala621Thr	p.A621T	ENST00000288135	NM_000222.2	621	Gct/Act																																																																														
KIT	0	MSKCC	GRCh37	4	55602770	55602770	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	101	199	0	ENST00000288135.5:c.2591C>A	p.Ser864Tyr	p.S864Y	ENST00000288135	NM_000222.2	864	tCt/tAt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197721	66197721	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs74487329		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	129	258	0	ENST00000273854.3:c.2978C>T	p.Ser993Leu	p.S993L	ENST00000273854	NM_004439.5	993	tCa/tTa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66230797	66230797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	114	266	0	ENST00000273854.3:c.2174C>T	p.Ala725Val	p.A725V	ENST00000273854	NM_004439.5	725	gCa/gTa																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66280125	66280125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	96	196	0	ENST00000273854.3:c.1564G>A	p.Glu522Lys	p.E522K	ENST00000273854	NM_004439.5	522	Gag/Aag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66535333	66535333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	194	427	1	ENST00000273854.3:c.128G>A	p.Cys43Tyr	p.C43Y	ENST00000273854	NM_004439.5	43	tGc/tAc																																																																														
EIF4E	0	MSKCC	GRCh37	4	99809104	99809104	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	90	239	0	ENST00000280892.6:c.282-1G>A		p.X94_splice	ENST00000280892	NM_001130678.1	94																																																																															
TET2	0	MSKCC	GRCh37	4	106164848	106164848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	142	330	0	ENST00000380013.4:c.3716C>A	p.Ser1239Tyr	p.S1239Y	ENST00000380013	NM_001127208.2	1239	tCt/tAt																																																																														
TET2	0	MSKCC	GRCh37	4	106197216	106197216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	105	182	1	ENST00000380013.4:c.5549G>T	p.Ser1850Ile	p.S1850I	ENST00000380013	NM_001127208.2	1850	aGc/aTc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143081657	143081657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	150	231	1	ENST00000262992.4:c.1417C>A	p.Leu473Ile	p.L473I	ENST00000262992	NM_001101669.1	473	Ctc/Atc																																																																														
FAT1	0	MSKCC	GRCh37	4	187538232	187538232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	198	406	0	ENST00000441802.2:c.9002G>A	p.Gly3001Asp	p.G3001D	ENST00000441802	NM_005245.3	3001	gGc/gAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187584619	187584619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	145	340	0	ENST00000441802.2:c.3414G>T	p.Gln1138His	p.Q1138H	ENST00000441802	NM_005245.3	1138	caG/caT																																																																														
FAT1	0	MSKCC	GRCh37	4	187628551	187628551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	238	445	0	ENST00000441802.2:c.2431G>A	p.Val811Met	p.V811M	ENST00000441802	NM_005245.3	811	Gtg/Atg																																																																														
FAT1	0	MSKCC	GRCh37	4	187628574	187628574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	231	452	1	ENST00000441802.2:c.2408C>A	p.Ala803Asp	p.A803D	ENST00000441802	NM_005245.3	803	gCt/gAt																																																																														
TERT	0	MSKCC	GRCh37	5	1282710	1282710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	183	363	0	ENST00000310581.5:c.1603C>T	p.Arg535Cys	p.R535C	ENST00000310581	NM_198253.2	535	Cgt/Tgt																																																																														
TERT	0	MSKCC	GRCh37	5	1294123	1294123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	237	530	1	ENST00000310581.5:c.878G>A	p.Arg293His	p.R293H	ENST00000310581	NM_198253.2	293	cGc/cAc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31464386	31464386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	247	442	0	ENST00000344624.3:c.2531G>A	p.Ser844Asn	p.S844N	ENST00000344624		844	aGc/aAc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31466354	31466354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	227	410	1	ENST00000344624.3:c.2401C>T	p.Arg801Cys	p.R801C	ENST00000344624		801	Cgc/Tgc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31515115	31515115	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	168	405	0	ENST00000344624.3:c.1270A>G	p.Ser424Gly	p.S424G	ENST00000344624		424	Agt/Ggt																																																																														
IL7R	0	MSKCC	GRCh37	5	35876343	35876343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200570812		P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	172	296	0	ENST00000303115.3:c.1135G>A	p.Ala379Thr	p.A379T	ENST00000303115	NM_002185.3	379	Gcc/Acc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177771	56177771	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	122	222	0	ENST00000399503.3:c.2744T>G	p.Leu915Ter	p.L915*	ENST00000399503	NM_005921.1	915	tTa/tGa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591109	67591109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	146	240	0	ENST00000274335.5:c.1702C>T	p.Pro568Ser	p.P568S	ENST00000274335		568	Cca/Tca																																																																														
MSH3	0	MSKCC	GRCh37	5	79952342	79952342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	147	329	0	ENST00000265081.6:c.350G>A	p.Gly117Asp	p.G117D	ENST00000265081	NM_002439.4	117	gGc/gAc																																																																														
MSH3	0	MSKCC	GRCh37	5	79970948	79970948	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	246	411	0	ENST00000265081.6:c.1173+1G>T		p.X391_splice	ENST00000265081	NM_002439.4	391																																																																															
RASA1	0	MSKCC	GRCh37	5	86682664	86682664	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	83	163	0	ENST00000274376.6:c.2869A>G	p.Asn957Asp	p.N957D	ENST00000274376	NM_002890.2	957	Aat/Gat																																																																														
APC	0	MSKCC	GRCh37	5	112177591	112177591	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	92	253	0	ENST00000257430.4:c.6300T>G	p.Asp2100Glu	p.D2100E	ENST00000257430	NM_000038.5	2100	gaT/gaG																																																																														
CSF1R	0	MSKCC	GRCh37	5	149441342	149441342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	198	368	0	ENST00000286301.3:c.1697C>A	p.Pro566His	p.P566H	ENST00000286301	NM_005211.3	566	cCc/cAc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522584	176522584	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	189	413	0	ENST00000292408.4:c.1681T>G	p.Phe561Val	p.F561V	ENST00000292408	NM_213647.1	561	Ttc/Gtc																																																																														
FLT4	0	MSKCC	GRCh37	5	180030390	180030390	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	164	417	0	ENST00000261937.6:c.3894C>A	p.Ser1298Arg	p.S1298R	ENST00000261937	NM_182925.4	1298	agC/agA																																																																														
E2F3	0	MSKCC	GRCh37	6	20481629	20481629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	79	202	0	ENST00000346618.3:c.698A>G	p.Lys233Arg	p.K233R	ENST00000346618	NM_001949.4	233	aAg/aGg																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778262	27778262	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	135	235	0	ENST00000369163.2:c.411A>T	p.Ter137CysextTer6	p.*137Cext*6	ENST00000369163	NM_003536.2	137	tgA/tgT																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910691	29910691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	243	678	0	ENST00000376809.5:c.231G>T	p.Glu77Asp	p.E77D	ENST00000376809	NM_002116.7	77	gaG/gaT																																																																														
MDC1	0	MSKCC	GRCh37	6	30670441	30670441	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	138	280	0	ENST00000376406.3:c.5992-1G>T		p.X1998_splice	ENST00000376406	NM_014641.2	1998																																																																															
MDC1	0	MSKCC	GRCh37	6	30671580	30671580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	181	410	1	ENST00000376406.3:c.5380G>A	p.Ala1794Thr	p.A1794T	ENST00000376406	NM_014641.2	1794	Gca/Aca																																																																														
MDC1	0	MSKCC	GRCh37	6	30672050	30672050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	202	440	0	ENST00000376406.3:c.4910C>T	p.Ala1637Val	p.A1637V	ENST00000376406	NM_014641.2	1637	gCc/gTc																																																																														
MDC1	0	MSKCC	GRCh37	6	30681702	30681702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	138	293	0	ENST00000376406.3:c.395G>A	p.Arg132His	p.R132H	ENST00000376406	NM_014641.2	132	cGc/cAc																																																																														
STK19	0	MSKCC	GRCh37	6	31940432	31940432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	169	421	1	ENST00000375331.2:c.465G>T	p.Gln155His	p.Q155H	ENST00000375331	NM_004197.1	155	caG/caT																																																																														
STK19	0	MSKCC	GRCh37	6	31940482	31940482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	228	416	0	ENST00000375331.2:c.515G>A	p.Arg172Lys	p.R172K	ENST00000375331	NM_004197.1	172	aGg/aAg																																																																														
STK19	0	MSKCC	GRCh37	6	31948227	31948227	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	120	278	0	ENST00000375331.2:c.804-1G>T		p.X268_splice	ENST00000375331	NM_004197.1	268																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32165092	32165092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	199	346	0	ENST00000375023.3:c.5036C>T	p.Ala1679Val	p.A1679V	ENST00000375023	NM_004557.3	1679	gCt/gTt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32185808	32185808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	187	403	0	ENST00000375023.3:c.1588G>A	p.Asp530Asn	p.D530N	ENST00000375023	NM_004557.3	530	Gac/Aac																																																																														
TAP1	0	MSKCC	GRCh37	6	32816896	32816896	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	134	297	0	ENST00000354258.4:c.1429-1G>T		p.X477_splice	ENST00000354258	NM_000593.5	477																																																																															
TAP1	0	MSKCC	GRCh37	6	32818162	32818162	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	218	418	1	ENST00000354258.4:c.1363C>T	p.Gln455Ter	p.Q455*	ENST00000354258	NM_000593.5	455	Caa/Taa																																																																														
TAP1	0	MSKCC	GRCh37	6	32820165	32820165	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	146	368	0	ENST00000354258.4:c.893G>T	p.Ser298Ile	p.S298I	ENST00000354258	NM_000593.5	298	aGt/aTt																																																																														
DAXX	0	MSKCC	GRCh37	6	33287515	33287515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	180	364	0	ENST00000374542.5:c.1582G>A	p.Val528Met	p.V528M	ENST00000374542	NM_001141970.1	528	Gtg/Atg																																																																														
PIM1	0	MSKCC	GRCh37	6	37140787	37140787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	139	262	2	ENST00000373509.5:c.623G>T	p.Ser208Ile	p.S208I	ENST00000373509	NM_002648.3	208	aGc/aTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066669	94066669	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	167	311	0	ENST00000369303.4:c.1090A>G	p.Thr364Ala	p.T364A	ENST00000369303	NM_004440.3	364	Acc/Gcc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120297	94120297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	85	143	0	ENST00000369303.4:c.754G>A	p.Ala252Thr	p.A252T	ENST00000369303	NM_004440.3	252	Gca/Aca																																																																														
SESN1	0	MSKCC	GRCh37	6	109311950	109311950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	210	402	0	ENST00000436639.2:c.1322C>T	p.Ala441Val	p.A441V	ENST00000436639	NM_014454.2	441	gCt/gTt																																																																														
ROS1	0	MSKCC	GRCh37	6	117709026	117709026	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	187	351	0	ENST00000368508.3:c.1931A>C	p.Lys644Thr	p.K644T	ENST00000368508	NM_002944.2	644	aAa/aCa																																																																														
LATS1	0	MSKCC	GRCh37	6	149983373	149983373	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	123	275	0	ENST00000253339.5:c.2885T>C	p.Val962Ala	p.V962A	ENST00000253339		962	gTt/gCt																																																																														
LATS1	0	MSKCC	GRCh37	6	150001335	150001335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	161	326	0	ENST00000253339.5:c.2269C>A	p.Leu757Met	p.L757M	ENST00000253339		757	Ctg/Atg																																																																														
LATS1	0	MSKCC	GRCh37	6	150004595	150004595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	197	411	0	ENST00000253339.5:c.1630C>A	p.Pro544Thr	p.P544T	ENST00000253339		544	Cca/Aca																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099610	157099610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	44	56	0	ENST00000346085.5:c.547G>T	p.Gly183Cys	p.G183C	ENST00000346085	NM_020732.3	183	Ggc/Tgc																																																																														
PMS2	0	MSKCC	GRCh37	7	6042116	6042116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	67	109	0	ENST00000265849.7:c.505C>T	p.Arg169Cys	p.R169C	ENST00000265849	NM_000535.5	169	Cgc/Tgc																																																																														
RAC1	0	MSKCC	GRCh37	7	6441629	6441629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	192	398	0	ENST00000356142.4:c.476C>T	p.Pro159Leu	p.P159L	ENST00000356142	NM_018890.3	159	cCg/cTg																																																																														
ETV1	0	MSKCC	GRCh37	7	13975457	13975457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	99	206	0	ENST00000405192.2:c.430C>T	p.Pro144Ser	p.P144S	ENST00000405192	NM_001163147.1	144	Cca/Tca																																																																														
EGFR	0	MSKCC	GRCh37	7	55221761	55221761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	211	371	0	ENST00000275493.2:c.805C>A	p.Leu269Ile	p.L269I	ENST00000275493	NM_005228.3	269	Ctc/Atc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508409	106508409	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	86	150	0	ENST00000359195.3:c.403A>G	p.Ile135Val	p.I135V	ENST00000359195	NM_002649.2	135	Atc/Gtc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509484	106509484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	217	343	0	ENST00000359195.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000359195	NM_002649.2	493	gAc/gGc																																																																														
MET	0	MSKCC	GRCh37	7	116413350	116413350	+	intron_variant	Intron	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	318	610	0	ENST00000397752.3:c.3028+1307G>A		p.*1010*	ENST00000397752	NM_000245.2																																																																																
SMO	0	MSKCC	GRCh37	7	128849189	128849189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	186	367	0	ENST00000249373.3:c.1417G>A	p.Asp473Asn	p.D473N	ENST00000249373	NM_005631.4	473	Gac/Aac																																																																														
SMO	0	MSKCC	GRCh37	7	128851955	128851955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	224	457	1	ENST00000249373.3:c.2027G>A	p.Arg676Lys	p.R676K	ENST00000249373	NM_005631.4	676	aGg/aAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151846039	151846039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	131	225	0	ENST00000262189.6:c.12973C>A	p.Leu4325Met	p.L4325M	ENST00000262189	NM_170606.2	4325	Ctg/Atg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860837	151860837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	133	250	0	ENST00000262189.6:c.9825G>A	p.Met3275Ile	p.M3275I	ENST00000262189	NM_170606.2	3275	atG/atA																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133352	38133352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	150	261	0	ENST00000317025.8:c.4121C>T	p.Ala1374Val	p.A1374V	ENST00000317025	NM_023034.1	1374	gCt/gTt																																																																														
PRDM14	0	MSKCC	GRCh37	8	70978600	70978600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	184	384	0	ENST00000276594.2:c.1053G>T	p.Glu351Asp	p.E351D	ENST00000276594	NM_024504.3	351	gaG/gaT																																																																														
RAD21	0	MSKCC	GRCh37	8	117868966	117868966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	118	264	0	ENST00000297338.2:c.733C>A	p.Pro245Thr	p.P245T	ENST00000297338	NM_006265.2	245	Ccc/Acc																																																																														
AGO2	0	MSKCC	GRCh37	8	141569604	141569604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	122	247	0	ENST00000220592.5:c.680C>T	p.Ala227Val	p.A227V	ENST00000220592	NM_012154.3	227	gCa/gTa																																																																														
AGO2	0	MSKCC	GRCh37	8	141595218	141595218	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	188	340	1	ENST00000220592.5:c.215G>A	p.Arg72Lys	p.R72K	ENST00000220592	NM_012154.3	72	aGg/aAg																																																																														
JAK2	0	MSKCC	GRCh37	9	5080541	5080541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	83	150	0	ENST00000381652.3:c.2292A>C	p.Gln764His	p.Q764H	ENST00000381652	NM_004972.3	764	caA/caC																																																																														
PTPRD	0	MSKCC	GRCh37	9	8338930	8338930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	127	259	0	ENST00000356435.5:c.5371G>T	p.Asp1791Tyr	p.D1791Y	ENST00000356435		1791	Gat/Tat																																																																														
TEK	0	MSKCC	GRCh37	9	27180244	27180244	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	159	332	0	ENST00000380036.4:c.908A>G	p.His303Arg	p.H303R	ENST00000380036	NM_000459.3	303	cAc/cGc																																																																														
PAX5	0	MSKCC	GRCh37	9	37002653	37002653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	148	300	0	ENST00000358127.4:c.596G>T	p.Arg199Ile	p.R199I	ENST00000358127	NM_001280556.1	199	aGa/aTa																																																																														
PAX5	0	MSKCC	GRCh37	9	37006526	37006526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	102	205	0	ENST00000358127.4:c.419G>A	p.Arg140Gln	p.R140Q	ENST00000358127	NM_001280556.1	140	cGg/cAg																																																																														
PAX5	0	MSKCC	GRCh37	9	37020790	37020790	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	166	305	0	ENST00000358127.4:c.55G>T	p.Gly19Ter	p.G19*	ENST00000358127	NM_001280556.1	19	Gga/Tga																																																																														
NTRK2	0	MSKCC	GRCh37	9	87342722	87342722	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	147	363	0	ENST00000277120.3:c.1007T>G	p.Val336Gly	p.V336G	ENST00000277120		336	gTt/gGt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209585	98209585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	167	346	1	ENST00000331920.6:c.3953C>T	p.Pro1318Leu	p.P1318L	ENST00000331920	NM_000264.3	1318	cCg/cTg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98220348	98220348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	111	259	0	ENST00000331920.6:c.3115A>C	p.Thr1039Pro	p.T1039P	ENST00000331920	NM_000264.3	1039	Aca/Cca																																																																														
PTCH1	0	MSKCC	GRCh37	9	98242737	98242737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	147	308	0	ENST00000331920.6:c.880C>T	p.Arg294Cys	p.R294C	ENST00000331920	NM_000264.3	294	Cgc/Tgc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891254	101891254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	145	315	0	ENST00000374994.4:c.215T>C	p.Ile72Thr	p.I72T	ENST00000374994	NM_004612.2	72	aTa/aCa																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101894964	101894964	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	97	186	0	ENST00000374994.4:c.517G>T	p.Glu173Ter	p.E173*	ENST00000374994	NM_004612.2	173	Gag/Tag																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101907023	101907023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	96	193	0	ENST00000374994.4:c.983C>T	p.Ala328Val	p.A328V	ENST00000374994	NM_004612.2	328	gCc/gTc																																																																														
KLF4	0	MSKCC	GRCh37	9	110250311	110250311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	234	482	2	ENST00000374672.4:c.364G>A	p.Ala122Thr	p.A122T	ENST00000374672	NM_004235.4	122	Gcc/Acc																																																																														
TSC1	0	MSKCC	GRCh37	9	135771986	135771986	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	94	219	0	ENST00000298552.3:c.3131A>T	p.Glu1044Val	p.E1044V	ENST00000298552	NM_001162426.1	1044	gAg/gTg																																																																														
RXRA	0	MSKCC	GRCh37	9	137321022	137321022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	204	473	0	ENST00000481739.1:c.979G>A	p.Ala327Thr	p.A327T	ENST00000481739	NM_002957.4	327	Gcc/Acc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391608	139391608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	228	496	0	ENST00000277541.6:c.6583G>A	p.Gly2195Ser	p.G2195S	ENST00000277541	NM_017617.3	2195	Ggc/Agc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391992	139391992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	154	348	0	ENST00000277541.6:c.6199C>A	p.Leu2067Met	p.L2067M	ENST00000277541	NM_017617.3	2067	Ctg/Atg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400206	139400206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	186	403	0	ENST00000277541.6:c.4142C>T	p.Pro1381Leu	p.P1381L	ENST00000277541	NM_017617.3	1381	cCc/cTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400299	139400299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	227	404	2	ENST00000277541.6:c.4049G>A	p.Arg1350His	p.R1350H	ENST00000277541	NM_017617.3	1350	cGt/cAt																																																																														
EGFL7	0	MSKCC	GRCh37	9	139563116	139563116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	148	342	0	ENST00000308874.7:c.188G>A	p.Ser63Asn	p.S63N	ENST00000308874		63	aGc/aAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39916542	39916542	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	196	401	0	ENST00000378444.4:c.4461T>G	p.Ile1487Met	p.I1487M	ENST00000378444	NM_001123385.1	1487	atT/atG																																																																														
BCOR	0	MSKCC	GRCh37	X	39921574	39921574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	201	348	0	ENST00000378444.4:c.4246C>T	p.Pro1416Ser	p.P1416S	ENST00000378444	NM_001123385.1	1416	Cca/Tca																																																																														
KDM5C	0	MSKCC	GRCh37	X	53224571	53224571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	240	430	1	ENST00000375401.3:c.3142C>A	p.Leu1048Met	p.L1048M	ENST00000375401	NM_004187.3	1048	Ctg/Atg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53239882	53239882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	150	310	0	ENST00000375401.3:c.1559G>T	p.Ser520Ile	p.S520I	ENST00000375401	NM_004187.3	520	aGt/aTt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240770	53240770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	213	413	0	ENST00000375401.3:c.1310C>A	p.Thr437Asn	p.T437N	ENST00000375401	NM_004187.3	437	aCt/aAt																																																																														
AR	0	MSKCC	GRCh37	X	66766027	66766027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	264	547	1	ENST00000374690.3:c.1039C>A	p.Leu347Ile	p.L347I	ENST00000374690	NM_000044.3	347	Ctc/Atc																																																																														
AR	0	MSKCC	GRCh37	X	66863187	66863187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	158	322	0	ENST00000374690.3:c.1706G>T	p.Gly569Val	p.G569V	ENST00000374690	NM_000044.3	569	gGg/gTg																																																																														
AR	0	MSKCC	GRCh37	X	66863211	66863211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	148	303	1	ENST00000374690.3:c.1730G>A	p.Cys577Tyr	p.C577Y	ENST00000374690	NM_000044.3	577	tGt/tAt																																																																														
MED12	0	MSKCC	GRCh37	X	70338681	70338681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	152	389	0	ENST00000374080.3:c.77C>A	p.Pro26His	p.P26H	ENST00000374080		26	cCt/cAt																																																																														
MED12	0	MSKCC	GRCh37	X	70340917	70340917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	170	368	0	ENST00000374080.3:c.650C>A	p.Ser217Tyr	p.S217Y	ENST00000374080		217	tCc/tAc																																																																														
MED12	0	MSKCC	GRCh37	X	70342197	70342197	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	86	246	0	ENST00000374080.3:c.1248+1G>A		p.X416_splice	ENST00000374080		416																																																																															
MED12	0	MSKCC	GRCh37	X	70342400	70342400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	190	400	3	ENST00000374080.3:c.1291C>T	p.Arg431Trp	p.R431W	ENST00000374080		431	Cgg/Tgg																																																																														
ATRX	0	MSKCC	GRCh37	X	76939957	76939957	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	185	363	0	ENST00000373344.5:c.791A>G	p.Tyr264Cys	p.Y264C	ENST00000373344	NM_000489.3	264	tAt/tGt																																																																														
BTK	0	MSKCC	GRCh37	X	100613644	100613644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	186	337	2	ENST00000308731.7:c.935C>T	p.Ala312Val	p.A312V	ENST00000308731	NM_000061.2	312	gCt/gTt																																																																														
XIAP	0	MSKCC	GRCh37	X	123020144	123020144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	259	430	0	ENST00000355640.3:c.632A>G	p.Glu211Gly	p.E211G	ENST00000355640		211	gAa/gGa																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123505215	123505215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	85	290	0	ENST00000371139.4:c.361C>A	p.Pro121Thr	p.P121T	ENST00000371139	NM_001114937.2	121	Cct/Act																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860040	152860040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	127	360	0	ENST00000406277.2:c.388C>A	p.Leu130Met	p.L130M	ENST00000406277	NM_152274.4	130	Ctg/Atg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435303	110435303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	78	126	0	ENST00000375856.3:c.3098C>T	p.Pro1033Leu	p.P1033L	ENST00000375856	NM_003749.2	1033	cCa/cTa																																																																														
RAD52	0	MSKCC	GRCh37	12	1036330	1036333	+	missense_variant	Missense_Mutation	ONP	CGTC	CGTC	TGTA			P-0026297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	128	324	0	ENST00000358495.3:c.445_448delinsTACA	p.Asp149_Gly150delinsTyrArg	p.D149_G150delinsYR	ENST00000358495	NM_134424.2	149	GACGgg/TACAgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	11	340	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	167	471	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	227	319	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	154	442	1	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153250867	153250867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	414	279	0	ENST00000281708.4:c.1193C>T	p.Ser398Phe	p.S398F	ENST00000281708	NM_033632.3	398	tCt/tTt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15973495	15973495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	30	163	0	ENST00000268712.3:c.4497G>A	p.Met1499Ile	p.M1499I	ENST00000268712	NM_006311.3	1499	atG/atA																																																																														
FBXW7	0	MSKCC	GRCh37	4	153253817	153253817	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	67	300	0	ENST00000281708.4:c.916C>T	p.Gln306Ter	p.Q306*	ENST00000281708	NM_033632.3	306	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057853	27057853	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	148	462	1	ENST00000324856.7:c.1561C>T	p.Gln521Ter	p.Q521*	ENST00000324856	NM_006015.4	521	Cag/Tag																																																																														
CSDE1	0	MSKCC	GRCh37	1	115276442	115276442	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	77	433	0	ENST00000438362.2:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000438362	NM_001242891.1	296	Caa/Taa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3843624	3843624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	81	221	0	ENST00000262367.5:c.979C>T	p.Gln327Ter	p.Q327*	ENST00000262367	NM_004380.2	327	Cag/Tag																																																																														
GREM1	0	MSKCC	GRCh37	15	33023163	33023163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	89	336	0	ENST00000300177.4:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000300177	NM_001191322.1	91	cGa/cAa																																																																														
FANCA	0	MSKCC	GRCh37	16	89831471	89831471	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	79	358	0	ENST00000389301.3:c.2605C>T	p.Gln869Ter	p.Q869*	ENST00000389301	NM_000135.2	869	Cag/Tag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120496253	120496253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	98	352	0	ENST00000256646.2:c.2278G>A	p.Glu760Lys	p.E760K	ENST00000256646	NM_024408.3	760	Gaa/Aaa																																																																														
NTRK1	0	MSKCC	GRCh37	1	156838426	156838426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	122	482	2	ENST00000524377.1:c.704C>T	p.Ser235Leu	p.S235L	ENST00000524377	NM_002529.3	235	tCa/tTa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71939507	71939507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	215	552	0	ENST00000298229.2:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000298229	NM_001567.3	121	cGa/cAa																																																																														
CBL	0	MSKCC	GRCh37	11	119156272	119156272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	48	248	0	ENST00000264033.4:c.1937C>T	p.Ser646Phe	p.S646F	ENST00000264033	NM_005188.3	646	tCc/tTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49447007	49447007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	111	273	0	ENST00000301067.7:c.937C>T	p.His313Tyr	p.H313Y	ENST00000301067	NM_003482.3	313	Cac/Tac																																																																														
DIS3	0	MSKCC	GRCh37	13	73349366	73349366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	39	291	0	ENST00000377767.4:c.970G>C	p.Glu324Gln	p.E324Q	ENST00000377767	NM_014953.3	324	Gaa/Caa																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988387	36988387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	34	84	0	ENST00000354822.5:c.266G>A	p.Gly89Glu	p.G89E	ENST00000354822	NM_001079668.2	89	gGg/gAg																																																																														
MGA	0	MSKCC	GRCh37	15	41991070	41991070	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	30	309	0	ENST00000219905.7:c.2023G>C	p.Asp675His	p.D675H	ENST00000219905	NM_001164273.1	675	Gac/Cac																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14629038	14629038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	61	263	0	ENST00000254322.2:c.124G>A	p.Glu42Lys	p.E42K	ENST00000254322	NM_006145.1	42	Gag/Aag																																																																														
ERCC2	0	MSKCC	GRCh37	19	45872189	45872189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	126	383	0	ENST00000391945.4:c.245A>G	p.Lys82Arg	p.K82R	ENST00000391945	NM_000400.3	82	aAg/aGg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42840456	42840456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	79	304	0	ENST00000398585.3:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000398585	NM_001135099.1	431	tCa/tTa																																																																														
SETD2	0	MSKCC	GRCh37	3	47158225	47158225	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	22	245	0	ENST00000409792.3:c.4474C>G	p.Arg1492Gly	p.R1492G	ENST00000409792	NM_014159.6	1492	Cga/Gga																																																																														
INPP4B	0	MSKCC	GRCh37	4	143094889	143094889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	35	363	0	ENST00000262992.4:c.1255C>G	p.Gln419Glu	p.Q419E	ENST00000262992	NM_001101669.1	419	Caa/Gaa																																																																														
FAT1	0	MSKCC	GRCh37	4	187630695	187630756	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAAGCAAAAGTCTCCGAGAATGTACTCTTCAGCTTTGAACAGGTTTTCACTGTCTCCGGA	AGAAAGCAAAAGTCTCCGAGAATGTACTCTTCAGCTTTGAACAGGTTTTCACTGTCTCCGGA	-			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	66	379	0	ENST00000441802.2:c.226_287del	p.Ser76LysfsTer13	p.S76Kfs*13	ENST00000441802	NM_005245.3	76	TCCGGAGACAGTGAAAACCTGTTCAAAGCTGAAGAGTACATTCTCGGAGACTTTTGCTTTCTa/a																																																																														
RAD50	0	MSKCC	GRCh37	5	131931372	131931372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	103	284	0	ENST00000265335.6:c.2077G>A	p.Glu693Lys	p.E693K	ENST00000265335		693	Gag/Aag																																																																														
PARK2	0	MSKCC	GRCh37	6	161771139	161771139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	52	332	0	ENST00000366898.1:c.1390G>A	p.Asp464Asn	p.D464N	ENST00000366898	NM_004562.2	464	Gac/Aac																																																																														
EGFR	0	MSKCC	GRCh37	7	55221753	55221753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	64	383	0	ENST00000275493.2:c.797C>T	p.Pro266Leu	p.P266L	ENST00000275493	NM_005228.3	266	cCa/cTa																																																																														
MET	0	MSKCC	GRCh37	7	116411975	116411975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	161	480	0	ENST00000397752.3:c.2960G>A	p.Arg987Gln	p.R987Q	ENST00000397752	NM_000245.2	987	cGa/cAa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38172201	38172201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	39	306	0	ENST00000317025.8:c.2206C>T	p.Pro736Ser	p.P736S	ENST00000317025	NM_023034.1	736	Cct/Tct																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38194841	38194841	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	62	381	0	ENST00000317025.8:c.892A>T	p.Thr298Ser	p.T298S	ENST00000317025	NM_023034.1	298	Act/Tct																																																																														
ABL1	0	MSKCC	GRCh37	9	133759978	133759985	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGGAGA	AGGGGAGA	-			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	130	514	0	ENST00000318560.5:c.2302_2309del	p.Gly768GlnfsTer3	p.G768Qfs*3	ENST00000318560	NM_005157.4	767	gcAGGGGAGAac/gcac																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15809130	15809130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	95	189	0	ENST00000307771.7:c.115G>A	p.Asp39Asn	p.D39N	ENST00000307771	NM_005089.3	39	Gac/Aac																																																																														
KDM6A	0	MSKCC	GRCh37	X	44870265	44870265	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	85	163	0	ENST00000377967.4:c.443+1G>A		p.X148_splice	ENST00000377967	NM_021140.2	148																																																																															
RBM10	0	MSKCC	GRCh37	X	47045172	47045172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	66	226	0	ENST00000329236.7:c.2179G>C	p.Glu727Gln	p.E727Q	ENST00000329236	NM_001204466.1	727	Gag/Cag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272264	15272264	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	30	333	0	ENST00000263388.2:c.6175G>C	p.Gly2059Arg	p.G2059R	ENST00000263388	NM_000435.2	2059	Ggg/Cgg																																																																														
LATS1	0	MSKCC	GRCh37	6	149983251	149983254	+	missense_variant	Missense_Mutation	ONP	CATC	CATC	TATT			P-0026324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	41	389	0	ENST00000253339.5:c.3004_3007delinsAATA	p.Asp1002_Glu1003delinsAsnLys	p.D1002_E1003delinsNK	ENST00000253339		1002	GATGaa/AATAaa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0026328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	370	323	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	346	354	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	200	372	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30095744	30095744	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	23	324	1	ENST00000331968.5:c.1744C>T	p.Gln582Ter	p.Q582*	ENST00000331968	NM_002742.2	582	Cag/Tag																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793381	242793381	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	126	519	0	ENST00000334409.5:c.696G>C	p.Glu232Asp	p.E232D	ENST00000334409	NM_005018.2	232	gaG/gaC																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267331	198267331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	201	321	2	ENST00000335508.6:c.2026G>A	p.Gly676Ser	p.G676S	ENST00000335508	NM_012433.2	676	Ggc/Agc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55140746	55140746	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	220	330	0	ENST00000257290.5:c.1607T>A	p.Val536Glu	p.V536E	ENST00000257290	NM_006206.4	536	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0026454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	74	680	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
IKZF1	0	MSKCC	GRCh37	7	50450243	50450243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	102	479	2	ENST00000331340.3:c.427C>T	p.Arg143Trp	p.R143W	ENST00000331340	NM_006060.4	143	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	102	361	0				ENST00000310581	NM_198253.2																																																																																
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0026460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	288	539	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																																																														
FLCN	0	MSKCC	GRCh37	17	17131232	17131232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	217	743	1	ENST00000285071.4:c.220C>A	p.Pro74Thr	p.P74T	ENST00000285071	NM_144997.5	74	Ccg/Acg																																																																														
MTOR	0	MSKCC	GRCh37	1	11210220	11210220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	193	633	0	ENST00000361445.4:c.4533G>T	p.Lys1511Asn	p.K1511N	ENST00000361445	NM_004958.3	1511	aaG/aaT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023588	27023642	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTCCCCGAGAGGTGGCACTCCGGGCTCCGGCGCGGCGGCGGCTGCCGGCTCCA	AGCTCCCCGAGAGGTGGCACTCCGGGCTCCGGCGCGGCGGCGGCTGCCGGCTCCA	-			P-0026460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	144	410	0	ENST00000324856.7:c.697_751del	p.Ser233ArgfsTer112	p.S233Rfs*112	ENST00000324856	NM_006015.4	232	AGCTCCCCGAGAGGTGGCACTCCGGGCTCCGGCGCGGCGGCGGCTGCCGGCTCCAag/ag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092946	27092946	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0026460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	118	377	0	ENST00000324856.7:c.2879-2A>T		p.X960_splice	ENST00000324856	NM_006015.4	960																																																																															
EZH1	0	MSKCC	GRCh37	17	40856633	40856633	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	167	580	0	ENST00000428826.2:c.2004C>G	p.Phe668Leu	p.F668L	ENST00000428826		668	ttC/ttG																																																																														
RASA1	0	MSKCC	GRCh37	5	86681165	86681165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	149	411	0	ENST00000274376.6:c.2806T>C	p.Ser936Pro	p.S936P	ENST00000274376	NM_002890.2	936	Tct/Cct																																																																														
PTEN	0	MSKCC	GRCh37	10	89692791	89692796	+	inframe_deletion	In_Frame_Del	DEL	ACCATA	ACCATA	-			P-0026461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	164	418	0	ENST00000371953.3:c.278_283del	p.His93_Asn94del	p.H93_N94del	ENST00000371953	NM_000314.4	92	gACCATAac/gac																																																																														
STK11	0	MSKCC	GRCh37	19	1220369	1220388	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGTACTTCTGTCAGCTGA	CAGGTACTTCTGTCAGCTGA	-			P-0026461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	116	530	0	ENST00000326873.7:c.465-3_481del		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
KMT2B	0	MSKCC	GRCh37	19	36224384	36224384	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	250	831	1	ENST00000222270.7:c.6934C>T	p.Gln2312Ter	p.Q2312*	ENST00000222270	NM_014727.1	2312	Cag/Tag																																																																														
EZH1	0	MSKCC	GRCh37	17	40871161	40871161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	133	583	0	ENST00000428826.2:c.729G>A	p.Met243Ile	p.M243I	ENST00000428826		243	atG/atA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	151	312	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0004729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	99	256	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0004729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			336	236	346	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
APC	0	MSKCC	GRCh37	5	112174682	112174682	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	76	206	0	ENST00000257430.4:c.3391C>T	p.Gln1131Ter	p.Q1131*	ENST00000257430	NM_000038.5	1131	Caa/Taa																																																																														
PAX5	0	MSKCC	GRCh37	9	36966554	36966554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	352	324	0	ENST00000358127.4:c.772C>A	p.Pro258Thr	p.P258T	ENST00000358127	NM_001280556.1	258	Ccc/Acc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112035	115112035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	116	399	0	ENST00000257566.3:c.1705G>C	p.Gly569Arg	p.G569R	ENST00000257566	NM_016569.3	569	Gga/Cga																																																																														
MED12	0	MSKCC	GRCh37	X	70340935	70340935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			413	101	362	0	ENST00000374080.3:c.668C>A	p.Pro223His	p.P223H	ENST00000374080		223	cCc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006139-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			797	193	610	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
MPL	0	MSKCC	GRCh37	1	43812583	43812583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006139-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			812	46	640	1	ENST00000372470.3:c.1286G>A	p.Gly429Glu	p.G429E	ENST00000372470	NM_005373.2	429	gGa/gAa																																																																														
POLE	0	MSKCC	GRCh37	12	133226406	133226406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006139-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			738	42	618	0	ENST00000320574.5:c.3652G>T	p.Val1218Leu	p.V1218L	ENST00000320574	NM_006231.2	1218	Gta/Tta																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306700	41306700	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006139-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			709	72	543	0	ENST00000373198.4:c.959T>G	p.Ile320Ser	p.I320S	ENST00000373198	NM_133170.3	320	aTc/aGc																																																																														
RBM10	0	MSKCC	GRCh37	X	47039658	47039659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006139-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	115	655	0	ENST00000329236.7:c.877dup	p.Thr293AsnfsTer10	p.T293Nfs*10	ENST00000329236	NM_001204466.1	292	-/A																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007864-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	213	665	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007864-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			796	201	643	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007864-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			361	180	574	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0007864-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	122	373	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
LATS1	0	MSKCC	GRCh37	6	150004270	150004270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007864-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	151	405	0	ENST00000253339.5:c.1955A>G	p.Lys652Arg	p.K652R	ENST00000253339		652	aAa/aGa																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713613	30713613	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007864-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			224	199	458	0	ENST00000359013.4:c.1014del	p.Lys339ArgfsTer10	p.K339Rfs*10	ENST00000359013	NM_001024847.2	338	cGg/cg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249092	55249092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007864-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	222	696	0	ENST00000275493.2:c.2390G>C	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	tGc/tCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0019852-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	114	217	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
ARID2	0	MSKCC	GRCh37	12	46123837	46123837	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019852-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	54	136	0	ENST00000334344.6:c.103A>T	p.Lys35Ter	p.K35*	ENST00000334344	NM_152641.2	35	Aaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019852-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	163	287	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
CDKN1B	0	MSKCC	GRCh37	12	12871861	12871861	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019852-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	65	111	0	ENST00000228872.4:c.578del	p.Leu193ProfsTer32	p.L193Pfs*32	ENST00000228872	NM_004064.3	193	cTc/cc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39537702	39537702	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019852-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			237	23	128	0	ENST00000262039.4:c.236A>G	p.Lys79Arg	p.K79R	ENST00000262039	NM_002647.2	79	aAa/aGa																																																																														
MEN1	0	MSKCC	GRCh37	11	64575112	64575112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022933-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			144	83	316	0	ENST00000337652.1:c.710G>A	p.Arg237His	p.R237H	ENST00000337652	NM_130803.2	237	cGc/cAc																																																																														
ROS1	0	MSKCC	GRCh37	6	117609902	117609902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	201	494	0	ENST00000368508.3:c.6797C>T	p.Thr2266Met	p.T2266M	ENST00000368508	NM_002944.2	2266	aCg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	68	225	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0026226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	50	198	0	ENST00000399503.3:c.819_820delAG	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																														
TBX3	0	MSKCC	GRCh37	12	115115440	115115440	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	46	341	0	ENST00000257566.3:c.886A>G	p.Asn296Asp	p.N296D	ENST00000257566	NM_016569.3	296	Aac/Gac																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348810	89348811	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0026226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	201	688	0	ENST00000301030.4:c.4139dup	p.Tyr1380Ter	p.Y1380*	ENST00000301030	NM_001256183.1	1380	tac/taAc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56189417	56189418	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0026226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	60	316	0	ENST00000399503.3:c.4451_4452del	p.Val1484GlyfsTer38	p.V1484Gfs*38	ENST00000399503	NM_005921.1	1483	gaTGtg/gatg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44918709	44918709	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0026226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	46	275	0	ENST00000377967.4:c.1192C>T	p.Gln398Ter	p.Q398*	ENST00000377967	NM_021140.2	398	Cag/Tag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	104	154	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
TBX3	0	MSKCC	GRCh37	12	115115438	115115439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	216	361	0	ENST00000257566.3:c.887dupA	p.Asn296LysfsTer31	p.N296Kfs*31	ENST00000257566	NM_016569.3	296	aac/aaAc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2223458	2223459	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTCT			P-0026228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	129	231	0	ENST00000398665.3:c.3570_3573dup	p.Glu1192LeufsTer2	p.E1192Lfs*2	ENST00000398665	NM_032482.2	1190	ggc/ggCTCTc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30100143	30100143	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs191202207		P-0026229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	37	355	0	ENST00000331968.5:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000331968	NM_002742.2	493	Gaa/Aaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151835903	151835903	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	38	224	0	ENST00000262189.6:c.14621G>C	p.Arg4874Pro	p.R4874P	ENST00000262189	NM_170606.2	4874	cGg/cCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	259	461	1	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873104	134873104	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202048188		P-0026233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	24	275	0	ENST00000398015.3:c.1408C>T	p.Arg470Trp	p.R470W	ENST00000398015	NM_004441.4	470	Cgg/Tgg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66230818	66230818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	46	172	0	ENST00000273854.3:c.2153G>A	p.Arg718His	p.R718H	ENST00000273854	NM_004439.5	718	cGc/cAc																																																																														
CALR	0	MSKCC	GRCh37	19	13049956	13049956	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	26	230	0	ENST00000316448.5:c.100A>T	p.Thr34Ser	p.T34S	ENST00000316448	NM_004343.3	34	Act/Tct																																																																														
APC	0	MSKCC	GRCh37	5	112175251	112175255	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCG	GAGCG	-			P-0026233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	43	100	0	ENST00000257430.4:c.3960_3964del	p.Glu1322SerfsTer8	p.E1322Sfs*8	ENST00000257430	NM_000038.5	1320	gtGAGCGaa/gtaa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0026234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	111	366	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67479795	67479795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	93	270	0	ENST00000327367.4:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000327367	NM_005902.3	368	Cga/Tga																																																																														
MTOR	0	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	104	356	0	ENST00000361445.4:c.7280T>A	p.Leu2427Gln	p.L2427Q	ENST00000361445	NM_004958.3	2427	cTg/cAg																																																																														
CDK12	0	MSKCC	GRCh37	17	37665992	37665992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	75	238	0	ENST00000447079.4:c.2644C>T	p.Arg882Trp	p.R882W	ENST00000447079	NM_015083.1	882	Cgg/Tgg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912267	32912267	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	41	281	0	ENST00000380152.3:c.3775A>C	p.Ser1259Arg	p.S1259R	ENST00000380152		1259	Agt/Cgt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482833	67482833	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	64	327	0	ENST00000327367.4:c.1237C>T	p.Gln413Ter	p.Q413*	ENST00000327367	NM_005902.3	413	Cag/Tag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991632	72991632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	110	306	0	ENST00000268489.5:c.2413C>T	p.Arg805Trp	p.R805W	ENST00000268489	NM_006885.3	805	Cgg/Tgg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45374902	45374902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	152	329	0	ENST00000262160.6:c.941G>A	p.Gly314Asp	p.G314D	ENST00000262160	NM_005901.5	314	gGt/gAt																																																																														
ERCC2	0	MSKCC	GRCh37	19	45855904	45855904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	67	427	2	ENST00000391945.4:c.1906C>T	p.Arg636Trp	p.R636W	ENST00000391945	NM_000400.3	636	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175488	112175488	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	22	155	0	ENST00000257430.4:c.4198del	p.Ser1400ArgfsTer15	p.S1400Rfs*15	ENST00000257430	NM_000038.5	1399	cgT/cg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	152	353	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42852481	42852481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	123	334	0	ENST00000398585.3:c.605G>A	p.Arg202Lys	p.R202K	ENST00000398585	NM_001135099.1	202	aGg/aAg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832266	72832266	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	99	220	0	ENST00000268489.5:c.4315C>T	p.Arg1439Ter	p.R1439*	ENST00000268489	NM_006885.3	1439	Cga/Tga																																																																														
ALK	0	MSKCC	GRCh37	2	29456434	29456434	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	139	389	0	ENST00000389048.3:c.2484T>A	p.Phe828Leu	p.F828L	ENST00000389048	NM_004304.4	828	ttT/ttA																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	521	440	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	495	389	0	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0026241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	411	391	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	435	395	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
RB1	0	MSKCC	GRCh37	13	48936995	48936995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	334	312	0	ENST00000267163.4:c.763C>T	p.Arg255Ter	p.R255*	ENST00000267163	NM_000321.2	255	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175912	112175912	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201801		P-0026241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	235	160	0	ENST00000257430.4:c.4621C>T	p.Gln1541Ter	p.Q1541*	ENST00000257430	NM_000038.5	1541	Cag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29528178	29528178	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	379	327	2	ENST00000358273.4:c.1185+1G>A		p.X395_splice	ENST00000358273	NM_001042492.2	395																																																																															
TP53	0	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	336	461	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51436084	51436084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	76	221	0	ENST00000262662.1:c.44G>A	p.Arg15Lys	p.R15K	ENST00000262662		15	aGg/aAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	239	341	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794881	242794881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190602950		P-0026250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	201	363	1	ENST00000334409.5:c.328G>A	p.Val110Met	p.V110M	ENST00000334409	NM_005018.2	110	Gtg/Atg																																																																														
RHOA	0	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	299	380	0	ENST00000418115.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000418115	NM_001664.2	42	tAt/tGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106649	27106649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	319	330	0	ENST00000324856.7:c.6260G>A	p.Gly2087Glu	p.G2087E	ENST00000324856	NM_006015.4	2087	gGa/gAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	258	379	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433373	49433373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	32	350	0	ENST00000301067.7:c.8074C>T	p.Arg2692Trp	p.R2692W	ENST00000301067	NM_003482.3	2692	Cgg/Tgg																																																																														
RNF43	0	MSKCC	GRCh37	17	56492806	56492806	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	370	304	1	ENST00000407977.2:c.133A>T	p.Lys45Ter	p.K45*	ENST00000407977		45	Aaa/Taa																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138197141	138197141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	76	121	0	ENST00000237289.4:c.643C>G	p.Leu215Val	p.L215V	ENST00000237289	NM_001270507.1	215	Cta/Gta																																																																														
HRAS	0	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	37	349	0	ENST00000311189.7:c.38G>A	p.Gly13Asp	p.G13D	ENST00000311189		13	gGt/gAt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061127	38061197	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	TGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGC	-			P-0026256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	67	75	0	ENST00000250448.2:c.792_862del	p.Arg265GlyfsTer4	p.R265Gfs*4	ENST00000250448	NM_004496.3	264	aaGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAag/aaag																																																																														
ALK	0	MSKCC	GRCh37	2	29436892	29436892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	9	334	1	ENST00000389048.3:c.3701C>A	p.Ala1234Asp	p.A1234D	ENST00000389048	NM_004304.4	1234	gCc/gAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	57	335	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	68	351	1	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	53	346	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	72	336	1	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	59	485	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
RNF43	0	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	38	212	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	45	383	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36222961	36222961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	65	471	0	ENST00000222270.7:c.5590C>T	p.Arg1864Ter	p.R1864*	ENST00000222270	NM_014727.1	1864	Cga/Tga																																																																														
ARID2	0	MSKCC	GRCh37	12	46243915	46243915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	70	265	0	ENST00000334344.6:c.2009C>A	p.Pro670His	p.P670H	ENST00000334344	NM_152641.2	670	cCt/cAt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63534404	63534404	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	61	398	0	ENST00000307078.5:c.1117G>T	p.Glu373Ter	p.E373*	ENST00000307078	NM_004655.3	373	Gag/Tag																																																																														
BRD4	0	MSKCC	GRCh37	19	15355329	15355346	+	inframe_deletion	In_Frame_Del	DEL	GGGGGCTGCTGGGGAGGC	GGGGGCTGCTGGGGAGGC	-			P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	26	214	0	ENST00000263377.2:c.2277_2294del	p.Gln762_Pro767del	p.Q762_P767del	ENST00000263377	NM_058243.2	759	ccGCCTCCCCAGCAGCCCCCa/cca																																																																														
KMT2B	0	MSKCC	GRCh37	19	36208926	36208935	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGGCG	GGCGGCGGCG	-			P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	11	16	0	ENST00000222270.7:c.15_24del	p.Gly6ValfsTer37	p.G6Vfs*37	ENST00000222270	NM_014727.1	2	gcGGCGGCGGCG/gc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66535412	66535412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	32	195	0	ENST00000273854.3:c.49G>A	p.Gly17Ser	p.G17S	ENST00000273854	NM_004439.5	17	Ggc/Agc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31435934	31435936	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	54	300	0	ENST00000344624.3:c.2978_2980del	p.Glu993del	p.E993del	ENST00000344624		993	gAAGga/gga																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197265	26197265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	37	274	1	ENST00000356476.2:c.214G>A	p.Val72Ile	p.V72I	ENST00000356476		72	Gtc/Atc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	215	384	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699262	117699262	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	119	242	0	ENST00000369458.3:c.379A>C	p.Thr127Pro	p.T127P	ENST00000369458	NM_024626.3	127	Acc/Ccc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0026261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	90	285	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ATM	0	MSKCC	GRCh37	11	108139157	108139157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	78	263	1	ENST00000278616.4:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000278616	NM_000051.3	887	Gaa/Aaa																																																																														
CDH1	0	MSKCC	GRCh37	16	68847399	68847399	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0026261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	84	251	0	ENST00000261769.5:c.1320+1G>A		p.X440_splice	ENST00000261769	NM_004360.3	440																																																																															
PTPRS	0	MSKCC	GRCh37	19	5260818	5260818	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	100	383	3	ENST00000357368.4:c.593G>A	p.Arg198Gln	p.R198Q	ENST00000357368	NM_002850.3	198	cGa/cAa																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652272	36652272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	95	276	0	ENST00000244741.5:c.394G>A	p.Gly132Ser	p.G132S	ENST00000244741	NM_000389.4	132	Ggt/Agt																																																																														
STAG2	0	MSKCC	GRCh37	X	123227947	123227947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	81	323	0	ENST00000218089.9:c.3658G>A	p.Glu1220Lys	p.E1220K	ENST00000218089	NM_001042749.1	1220	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0026316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	70	162	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	78	301	1	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435069	49435073	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGG	TGAGG	-			P-0026316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	219	343	0	ENST00000301067.7:c.6480_6484del	p.Phe2160LeufsTer40	p.F2160Lfs*40	ENST00000301067	NM_003482.3	2160	ttCCTCAag/ttag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830100	72830101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	101	300	0	ENST00000268489.5:c.6480dup	p.Arg2161AlafsTer5	p.R2161Afs*5	ENST00000268489	NM_006885.3	2160	-/G																																																																														
BCOR	0	MSKCC	GRCh37	X	39933965	39933966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	20	240	0	ENST00000378444.4:c.633_634insG	p.Lys212GlufsTer89	p.K212Efs*89	ENST00000378444	NM_001123385.1	211	-/G																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324539	31324539	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	13	102	1	ENST00000412585.2:c.269T>A	p.Ile90Asn	p.I90N	ENST00000412585	NM_005514.6	90	aTc/aAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	69	112	0				ENST00000310581	NM_198253.2																																																																																
KMT2A	0	MSKCC	GRCh37	11	118307265	118307265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	11	63	0	ENST00000534358.1:c.38C>T	p.Pro13Leu	p.P13L	ENST00000534358	NM_005933.3	13	cCc/cTc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118370117	118370117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	51	202	0	ENST00000534358.1:c.6061A>C	p.Asn2021His	p.N2021H	ENST00000534358	NM_005933.3	2021	Aat/Cat																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15290241	15290241	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	135	512	0	ENST00000263388.2:c.3394del	p.Gln1132SerfsTer140	p.Q1132Sfs*140	ENST00000263388	NM_000435.2	1132	Cag/ag																																																																														
MTOR	0	MSKCC	GRCh37	1	11217324	11217335	+	inframe_deletion	In_Frame_Del	DEL	TCTCATACCAGG	TCTCATACCAGG	-			P-0026358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	24	325	0	ENST00000361445.4:c.4343_4354del	p.Thr1448_Glu1451del	p.T1448_E1451del	ENST00000361445	NM_004958.3	1448	aCCTGGTATGAGAaa/aaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151891205	151891205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	77	254	0	ENST00000262189.6:c.4549G>A	p.Gly1517Arg	p.G1517R	ENST00000262189	NM_170606.2	1517	Gga/Aga																																																																														
ROS1	0	MSKCC	GRCh37	6	117609921	117609921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	196	277	0	ENST00000368508.3:c.6778C>T	p.Pro2260Ser	p.P2260S	ENST00000368508	NM_002944.2	2260	Cca/Tca																																																																														
ATRX	0	MSKCC	GRCh37	X	76938233	76938233	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	254	319	0	ENST00000373344.5:c.2515A>T	p.Lys839Ter	p.K839*	ENST00000373344	NM_000489.3	839	Aaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	104	292	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MGA	0	MSKCC	GRCh37	15	42003496	42003496	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	21	285	0	ENST00000219905.7:c.3033C>A	p.Tyr1011Ter	p.Y1011*	ENST00000219905	NM_001164273.1	1011	taC/taA																																																																														
RBM10	0	MSKCC	GRCh37	X	47039842	47039846	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCA	TCGCA	-			P-0026363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	50	374	0	ENST00000329236.7:c.953_957del	p.Arg318GlnfsTer45	p.R318Qfs*45	ENST00000329236	NM_001204466.1	317	agTCGCAtc/agtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	92	302	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RNF43	0	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	162	157	1	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																																																														
ELF3	0	MSKCC	GRCh37	1	201984414	201984414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	193	383	0	ENST00000359651.3:c.1079G>T	p.Gly360Val	p.G360V	ENST00000359651		360	gGc/gTc																																																																														
ATM	0	MSKCC	GRCh37	11	108218036	108218036	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	70	264	0	ENST00000278616.4:c.8615A>T	p.His2872Leu	p.H2872L	ENST00000278616	NM_000051.3	2872	cAt/cTt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691943	30691943	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	174	214	0	ENST00000359013.4:c.520T>A	p.Phe174Ile	p.F174I	ENST00000359013	NM_001024847.2	174	Ttc/Atc																																																																														
RBM10	0	MSKCC	GRCh37	X	47044594	47044595	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	209	224	0	ENST00000329236.7:c.1857_1858insA	p.Glu620ArgfsTer22	p.E620Rfs*22	ENST00000329236	NM_001204466.1	619	-/A																																																																														
MDM2	0	MSKCC	GRCh37	12	69222635	69222635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	138	610	0	ENST00000462284.1:c.608T>C	p.Leu203Pro	p.L203P	ENST00000462284	NM_002392.5	203	cTg/cCg																																																																														
VHL	0	MSKCC	GRCh37	3	10191529	10191529	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	166	483	0	ENST00000256474.2:c.523del	p.Tyr175ThrfsTer27	p.Y175Tfs*27	ENST00000256474	NM_000551.3	174	aaT/aa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52584834	52584834	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	117	544	0	ENST00000394830.3:c.4289-1G>A		p.X1430_splice	ENST00000394830	NM_018313.4	1430																																																																															
BTK	0	MSKCC	GRCh37	X	100612505	100612505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	178	233	0	ENST00000308731.7:c.1169T>C	p.Leu390Pro	p.L390P	ENST00000308731	NM_000061.2	390	cTg/cCg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56183205	56183205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	51	339	0	ENST00000399503.3:c.4115G>A	p.Gly1372Asp	p.G1372D	ENST00000399503	NM_005921.1	1372	gGt/gAt																																																																														
RICTOR	0	MSKCC	GRCh37	5	38942434	38942434	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201229460		P-0026368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	92	411	0	ENST00000357387.3:c.5099C>T	p.Pro1700Leu	p.P1700L	ENST00000357387	NM_152756.3	1700	cCt/cTt																																																																														
PRDM1	0	MSKCC	GRCh37	6	106552837	106552837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	145	559	1	ENST00000369096.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000369096	NM_001198.3	268	Cgt/Tgt																																																																														
MAX	0	MSKCC	GRCh37	14	65560514	65560514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	112	355	0	ENST00000358664.4:c.83A>G	p.His28Arg	p.H28R	ENST00000358664	NM_002382.4	28	cAt/cGt																																																																														
EGFR	0	MSKCC	GRCh37	7	55240786	55240786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	25	569	2	ENST00000275493.2:c.2030G>A	p.Arg677His	p.R677H	ENST00000275493	NM_005228.3	677	cGc/cAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092823	27092823	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0026373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	151	543	0	ENST00000324856.7:c.2844T>G	p.Tyr948Ter	p.Y948*	ENST00000324856	NM_006015.4	948	taT/taG																																																																														
ARID5B	0	MSKCC	GRCh37	10	63845593	63845593	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	88	337	1	ENST00000279873.7:c.1332del	p.Lys445AsnfsTer34	p.K445Nfs*34	ENST00000279873	NM_032199.2	444	atC/at																																																																														
PTEN	0	MSKCC	GRCh37	10	89653789	89653789	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0026373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	206	341	0	ENST00000371953.3:c.87T>G	p.Tyr29Ter	p.Y29*	ENST00000371953	NM_000314.4	29	taT/taG																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247361	153247362	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCTCGA			P-0026373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	83	315	0	ENST00000281708.4:c.1434_1440dup	p.Ala481SerfsTer6	p.A481Sfs*6	ENST00000281708	NM_033632.3	480	-/TCGAGAT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	276	435	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	350	623	0	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1220706	1220706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	170	464	0	ENST00000326873.7:c.727del	p.Val243SerfsTer44	p.V243Sfs*44	ENST00000326873	NM_000455.4	242	Ggg/gg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	22	472	0	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356385	66356385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	166	380	0	ENST00000273854.3:c.1112C>G	p.Thr371Ser	p.T371S	ENST00000273854	NM_004439.5	371	aCt/aGt																																																																														
FAT1	0	MSKCC	GRCh37	4	187510141	187510141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	116	392	0	ENST00000441802.2:c.13372C>A	p.Gln4458Lys	p.Q4458K	ENST00000441802	NM_005245.3	4458	Cag/Aag																																																																														
BCOR	0	MSKCC	GRCh37	X	39922249	39922249	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	156	341	0	ENST00000378444.4:c.3923A>T	p.Gln1308Leu	p.Q1308L	ENST00000378444	NM_001123385.1	1308	cAg/cTg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910755	32910755	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	26	398	0	ENST00000380152.3:c.2263T>G	p.Ser755Ala	p.S755A	ENST00000380152		755	Tcc/Gcc																																																																														
BAP1	0	MSKCC	GRCh37	3	52441477	52441477	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	27	499	0	ENST00000460680.1:c.376-1G>A		p.X126_splice	ENST00000460680	NM_004656.3	126																																																																															
PDGFRA	0	MSKCC	GRCh37	4	55136804	55136804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	44	498	2	ENST00000257290.5:c.1126C>T	p.Arg376Ter	p.R376*	ENST00000257290	NM_006206.4	376	Cga/Tga																																																																														
BAP1	0	MSKCC	GRCh37	3	52441459	52441476	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AATCGCATATCCTTTGCT	AATCGCATATCCTTTGCT	-			P-0009513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	27	538	0	ENST00000460680.1:c.376_393del	p.Ser126_Ile131del	p.S126_I131del	ENST00000460680	NM_004656.3	126	AGCAAAGGATATGCGATT/-																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	149	215	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095824	178095824	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	299	297	0	ENST00000397062.3:c.1507A>T	p.Arg503Trp	p.R503W	ENST00000397062	NM_006164.4	503	Agg/Tgg																																																																														
LATS2	0	MSKCC	GRCh37	13	21562340	21562340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	185	217	0	ENST00000382592.4:c.1579A>C	p.Lys527Gln	p.K527Q	ENST00000382592	NM_014572.2	527	Aag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			523	166	424	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
ATM	0	MSKCC	GRCh37	11	108143579	108143579	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	384	322	0	ENST00000278616.4:c.3284G>T	p.Arg1095Ile	p.R1095I	ENST00000278616	NM_000051.3	1095	aGa/aTa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36222902	36222902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			852	308	711	0	ENST00000222270.7:c.5531C>T	p.Pro1844Leu	p.P1844L	ENST00000222270	NM_014727.1	1844	cCa/cTa																																																																														
EP300	0	MSKCC	GRCh37	22	41562637	41562637	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	150	426	0	ENST00000263253.7:c.3841C>T	p.Arg1281Ter	p.R1281*	ENST00000263253	NM_001429.3	1281	Cga/Tga																																																																														
PRKCI	0	MSKCC	GRCh37	3	170016891	170016891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			607	207	547	2	ENST00000295797.4:c.1696G>A	p.Asp566Asn	p.D566N	ENST00000295797	NM_002740.5	566	Gat/Aat																																																																														
INHBA	0	MSKCC	GRCh37	7	41729805	41729805	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			493	114	263	0	ENST00000242208.4:c.724A>G	p.Ile242Val	p.I242V	ENST00000242208	NM_002192.2	242	Att/Gtt																																																																														
BCOR	0	MSKCC	GRCh37	X	39931775	39931775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014065-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			674	193	540	0	ENST00000378444.4:c.2824G>T	p.Asp942Tyr	p.D942Y	ENST00000378444	NM_001123385.1	942	Gat/Tat																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	120	460	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
TSC2	0	MSKCC	GRCh37	16	2122257	2122257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	78	719	0	ENST00000219476.3:c.2113G>A	p.Val705Met	p.V705M	ENST00000219476	NM_000548.3	705	Gtg/Atg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	67	411	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134968200	134968200	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143309901		P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	97	607	0	ENST00000398015.3:c.2713C>T	p.Arg905Cys	p.R905C	ENST00000398015	NM_004441.4	905	Cgc/Tgc																																																																														
PREX2	0	MSKCC	GRCh37	8	68956789	68956789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	38	868	0	ENST00000288368.4:c.907G>A	p.Glu303Lys	p.E303K	ENST00000288368	NM_024870.2	303	Gag/Aag																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40730904	40730904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770182876		P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	65	713	2	ENST00000373198.4:c.3631G>A	p.Glu1211Lys	p.E1211K	ENST00000373198	NM_133170.3	1211	Gag/Aag																																																																														
TSC2	0	MSKCC	GRCh37	16	2137898	2137898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	190	847	0	ENST00000219476.3:c.5024C>T	p.Pro1675Leu	p.P1675L	ENST00000219476	NM_000548.3	1675	cCg/cTg																																																																														
JAK1	0	MSKCC	GRCh37	1	65323381	65323381	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	141	715	0	ENST00000342505.4:c.1416T>G	p.Phe472Leu	p.F472L	ENST00000342505	NM_002227.2	472	ttT/ttG																																																																														
TMEM127	0	MSKCC	GRCh37	2	96920731	96920731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	36	510	0	ENST00000258439.3:c.249C>G	p.Phe83Leu	p.F83L	ENST00000258439	NM_001193304.2	83	ttC/ttG																																																																														
E2F3	0	MSKCC	GRCh37	6	20402660	20402660	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	144	577	0	ENST00000346618.3:c.198del	p.Thr67ProfsTer13	p.T67Pfs*13	ENST00000346618	NM_001949.4	66	tCc/tc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38273416	38273416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	40	1055	1	ENST00000425967.3:c.1919G>A	p.Arg640Gln	p.R640Q	ENST00000425967	NM_001174067.1	640	cGa/cAa																																																																														
AGO2	0	MSKCC	GRCh37	8	141572697	141572697	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	34	656	0	ENST00000220592.5:c.373G>C	p.Asp125His	p.D125H	ENST00000220592	NM_012154.3	125	Gat/Cat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	211	504	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47006884	47006884	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	29	361	0	ENST00000329236.7:c.4G>T	p.Glu2Ter	p.E2*	ENST00000329236	NM_001204466.1	2	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	72	504	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	115	651	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38189104	38189104	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	51	393	0	ENST00000317025.8:c.911-1G>A		p.X304_splice	ENST00000317025	NM_023034.1	304																																																																															
FUBP1	0	MSKCC	GRCh37	1	78420988	78420988	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	86	408	0	ENST00000370768.2:c.1732G>T	p.Gly578Ter	p.G578*	ENST00000370768	NM_003902.3	578	Gga/Tga																																																																														
FLT1	0	MSKCC	GRCh37	13	28913395	28913395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	95	535	1	ENST00000282397.4:c.2398G>T	p.Asp800Tyr	p.D800Y	ENST00000282397	NM_002019.4	800	Gac/Tac																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041792	14041792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	61	397	0	ENST00000311895.7:c.2339C>A	p.Ser780Tyr	p.S780Y	ENST00000311895	NM_005236.2	780	tCc/tAc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15964736	15964736	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	73	417	0	ENST00000268712.3:c.5860A>G	p.Ser1954Gly	p.S1954G	ENST00000268712	NM_006311.3	1954	Agt/Ggt																																																																														
STK11	0	MSKCC	GRCh37	19	1219335	1219336	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	107	586	1	ENST00000326873.7:c.387_388delinsTT	p.Met129_Glu130delinsIleTer	p.M129_E130delinsI*	ENST00000326873	NM_000455.4	129	atGGag/atTTag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11095947	11095947	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	73	586	2	ENST00000344626.4:c.223-2A>T		p.X75_splice	ENST00000344626	NM_003072.3	75																																																																															
POLD1	0	MSKCC	GRCh37	19	50918796	50918796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	111	612	0	ENST00000440232.2:c.2666G>T	p.Arg889Leu	p.R889L	ENST00000440232	NM_002691.3	889	cGc/cTc																																																																														
KIT	0	MSKCC	GRCh37	4	55561885	55561885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	51	309	0	ENST00000288135.5:c.275C>A	p.Thr92Asn	p.T92N	ENST00000288135	NM_000222.2	92	aCc/aAc																																																																														
NSD1	0	MSKCC	GRCh37	5	176638735	176638735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	84	580	0	ENST00000439151.2:c.3335G>T	p.Ser1112Ile	p.S1112I	ENST00000439151	NM_022455.4	1112	aGc/aTc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222438	53222438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	112	582	0	ENST00000375401.3:c.4394G>T	p.Arg1465Leu	p.R1465L	ENST00000375401	NM_004187.3	1465	cGg/cTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63411017	63411017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	77	523	0	ENST00000330258.3:c.2150G>T	p.Cys717Phe	p.C717F	ENST00000330258	NM_152424.3	717	tGc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	278	345	0				ENST00000310581	NM_198253.2																																																																																
ELF3	0	MSKCC	GRCh37	1	201981252	201981253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	1124	830	0	ENST00000359651.3:c.332dup	p.Leu112SerfsTer23	p.L112Sfs*23	ENST00000359651		111	cgt/cGgt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361181	66361181	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	192	396	0	ENST00000273854.3:c.991G>T	p.Glu331Ter	p.E331*	ENST00000273854	NM_004439.5	331	Gaa/Taa																																																																														
KIT	0	MSKCC	GRCh37	4	55593606	55593614	+	inframe_deletion	In_Frame_Del	DEL	AAGGTTGTT	AAGGTTGTT	-			P-0001431-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	43	536	0	ENST00000288135.5:c.1672_1680del	p.Lys558_Val560del	p.K558_V560del	ENST00000288135	NM_000222.2	558	AAGGTTGTT/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578462	7578463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005787-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			115	256	729	0	ENST00000269305.4:c.467dupG	p.Val157ArgfsTer24	p.V157Rfs*24	ENST00000269305	NM_001126112.2	156	cgc/cgGc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36206809	36206816	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTGCGC	CTGTGCGC	-			P-0015992-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	63	340	0	ENST00000300305.3:c.696_703del	p.Arg233HisfsTer25	p.R233Hfs*25	ENST00000300305		232	cgGCGCACAGcc/cgcc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	135	465	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0026057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	89	462	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0026057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	72	339	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817765	3817765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			758	175	597	1	ENST00000262367.5:c.3206G>A	p.Gly1069Asp	p.G1069D	ENST00000262367	NM_004380.2	1069	gGc/gAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187540493	187540493	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	93	384	0	ENST00000441802.2:c.7247A>T	p.Asp2416Val	p.D2416V	ENST00000441802	NM_005245.3	2416	gAt/gTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0026097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	14	160	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0026097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	81	259	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
BARD1	0	MSKCC	GRCh37	2	215595215	215595215	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	30	166	1	ENST00000260947.4:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000260947	NM_000465.2	641	Cga/Tga																																																																														
KDM6A	0	MSKCC	GRCh37	X	44879872	44879884	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAGGTGCTTTA	AGGAGGTGCTTTA	-			P-0026097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	55	106	0	ENST00000377967.4:c.461_473del	p.Gln154LeufsTer22	p.Q154Lfs*22	ENST00000377967	NM_021140.2	154	cAGGAGGTGCTTTAt/ct																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	66	282	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857240	9857240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	41	254	2	ENST00000330684.3:c.4161C>A	p.Tyr1387Ter	p.Y1387*	ENST00000330684	NM_001134407.1	1387	taC/taA																																																																														
PPARG	0	MSKCC	GRCh37	3	12458219	12458219	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	37	256	0	ENST00000287820.6:c.836A>G	p.Asp279Gly	p.D279G	ENST00000287820	NM_015869.4	279	gAc/gGc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964454	70964454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	36	324	0	ENST00000276594.2:c.1574C>A	p.Ser525Tyr	p.S525Y	ENST00000276594	NM_024504.3	525	tCt/tAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	106	273	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098806	178098806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	92	377	0	ENST00000397062.3:c.239C>G	p.Thr80Arg	p.T80R	ENST00000397062	NM_006164.4	80	aCa/aGa																																																																														
PTEN	0	MSKCC	GRCh37	10	89711895	89711895	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	29	297	0	ENST00000371953.3:c.513G>C	p.Gln171His	p.Q171H	ENST00000371953	NM_000314.4	171	caG/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0026108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	126	454	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
MPL	0	MSKCC	GRCh37	1	43817960	43817960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	73	331	1	ENST00000372470.3:c.1639G>A	p.Ala547Thr	p.A547T	ENST00000372470	NM_005373.2	547	Gca/Aca																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25505474	25505474	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	70	279	0	ENST00000264709.3:c.284A>G	p.Lys95Arg	p.K95R	ENST00000264709	NM_175629.2	95	aAg/aGg																																																																														
LYN	0	MSKCC	GRCh37	8	56912094	56912094	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	57	338	0	ENST00000519728.1:c.1322A>C	p.Lys441Thr	p.K441T	ENST00000519728	NM_002350.3	441	aAa/aCa																																																																														
KIT	0	MSKCC	GRCh37	4	55593605	55593613	+	inframe_deletion	In_Frame_Del	DEL	GAAGGTTGT	GAAGGTTGT	-			P-0026110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	128	288	0	ENST00000288135.5:c.1671_1679del	p.Trp557_Val560delinsCys	p.W557_V560delinsC	ENST00000288135	NM_000222.2	557	tgGAAGGTTGTt/tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	33	563	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0026149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	31	396	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114711361	114711361	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	16	242	0	ENST00000543371.1:c.376C>T	p.Arg126Ter	p.R126*	ENST00000543371	NM_001198531.1	126	Cga/Tga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952086	178952086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	13	540	0	ENST00000263967.3:c.3141T>A	p.His1047Gln	p.H1047Q	ENST00000263967	NM_006218.2	1047	caT/caA																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	182	414	1	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																														
EZH2	0	MSKCC	GRCh37	7	148544344	148544344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	40	680	3	ENST00000320356.2:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000320356	NM_004456.4	16	cGg/cAg																																																																														
RXRA	0	MSKCC	GRCh37	9	137328452	137328452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	319	782	0	ENST00000481739.1:c.1381A>T	p.Met461Leu	p.M461L	ENST00000481739	NM_002957.4	461	Atg/Ttg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0026155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	173	510	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	445	495	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TET1	0	MSKCC	GRCh37	10	70333573	70333573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	112	479	0	ENST00000373644.4:c.1478C>A	p.Ala493Asp	p.A493D	ENST00000373644	NM_030625.2	493	gCt/gAt																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137183	64137183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	118	500	0	ENST00000334205.4:c.1615G>T	p.Ala539Ser	p.A539S	ENST00000334205	NM_003942.2	539	Gcc/Tcc																																																																														
GLI1	0	MSKCC	GRCh37	12	57858967	57858967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	181	677	0	ENST00000228682.2:c.463G>T	p.Gly155Cys	p.G155C	ENST00000228682	NM_005269.2	155	Ggt/Tgt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112319	115112319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	25	116	0	ENST00000257566.3:c.1421C>T	p.Pro474Leu	p.P474L	ENST00000257566	NM_016569.3	474	cCg/cTg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88476369	88476369	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	126	587	0	ENST00000360948.2:c.1763A>C	p.Glu588Ala	p.E588A	ENST00000360948	NM_001012338.2	588	gAg/gCg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857112	9857112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	91	336	0	ENST00000330684.3:c.4289C>T	p.Pro1430Leu	p.P1430L	ENST00000330684	NM_001134407.1	1430	cCt/cTt																																																																														
PALB2	0	MSKCC	GRCh37	16	23641693	23641693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	119	615	0	ENST00000261584.4:c.1782G>T	p.Arg594Ser	p.R594S	ENST00000261584	NM_024675.3	594	agG/agT																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713589	30713589	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	72	399	0	ENST00000359013.4:c.989T>C	p.Leu330Pro	p.L330P	ENST00000359013	NM_001024847.2	330	cTc/cCc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66233137	66233137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	160	466	0	ENST00000273854.3:c.1862G>T	p.Cys621Phe	p.C621F	ENST00000273854	NM_004439.5	621	tGt/tTt																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066435	94066435	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	37	249	0	ENST00000369303.4:c.1324G>A	p.Ala442Thr	p.A442T	ENST00000369303	NM_004440.3	442	Gct/Act																																																																														
TEK	0	MSKCC	GRCh37	9	27212860	27212860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	51	678	0	ENST00000380036.4:c.2842G>C	p.Val948Leu	p.V948L	ENST00000380036	NM_000459.3	948	Gtg/Ctg																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	264	629	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
PMS2	0	MSKCC	GRCh37	7	6026708	6026708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	281	659	1	ENST00000265849.7:c.1688G>T	p.Arg563Leu	p.R563L	ENST00000265849	NM_000535.5	563	cGa/cTa																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	195	345	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	143	261	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	199	486	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																														
CUL3	0	MSKCC	GRCh37	2	225422552	225422552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	57	310	1	ENST00000264414.4:c.88G>T	p.Val30Leu	p.V30L	ENST00000264414	NM_003590.4	30	Gta/Tta																																																																														
STK11	0	MSKCC	GRCh37	19	1207105	1207105	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	305	698	0	ENST00000326873.7:c.193G>T	p.Glu65Ter	p.E65*	ENST00000326873	NM_000455.4	65	Gag/Tag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212522509	212522509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	84	444	0	ENST00000342788.4:c.1916C>T	p.Thr639Met	p.T639M	ENST00000342788	NM_005235.2	639	aCg/aTg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30396516	30396516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	129	400	0	ENST00000331968.5:c.203C>T	p.Ser68Leu	p.S68L	ENST00000331968	NM_002742.2	68	tCg/tTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	140	495	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
MYCN	0	MSKCC	GRCh37	2	16082599	16082599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	81	197	0	ENST00000281043.3:c.413G>A	p.Arg138His	p.R138H	ENST00000281043	NM_005378.4	138	cGc/cAc																																																																														
MTOR	0	MSKCC	GRCh37	1	11199414	11199414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	262	559	0	ENST00000361445.4:c.5077C>T	p.His1693Tyr	p.H1693Y	ENST00000361445	NM_004958.3	1693	Cac/Tac																																																																														
CDC42	0	MSKCC	GRCh37	1	22413244	22413244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	20	43	0	ENST00000344548.3:c.371C>G	p.Ser124Cys	p.S124C	ENST00000344548	NM_001039802.1	124	tCt/tGt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462948	120462948	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	200	488	0	ENST00000256646.2:c.5383G>C	p.Glu1795Gln	p.E1795Q	ENST00000256646	NM_024408.3	1795	Gaa/Caa																																																																														
WT1	0	MSKCC	GRCh37	11	32456773	32456773	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	131	469	3	ENST00000332351.3:c.119G>A	p.Trp40Ter	p.W40*	ENST00000332351	NM_024426.4	40	tGg/tAg																																																																														
FGF4	0	MSKCC	GRCh37	11	69588819	69588819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	179	637	1	ENST00000168712.1:c.417G>T	p.Met139Ile	p.M139I	ENST00000168712	NM_002007.2	139	atG/atT																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18641492	18641492	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	112	550	1	ENST00000266497.5:c.2491G>T	p.Glu831Ter	p.E831*	ENST00000266497		831	Gag/Tag																																																																														
IRS2	0	MSKCC	GRCh37	13	110435065	110435065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	210	557	1	ENST00000375856.3:c.3336G>T	p.Glu1112Asp	p.E1112D	ENST00000375856	NM_003749.2	1112	gaG/gaT																																																																														
MGA	0	MSKCC	GRCh37	15	42059047	42059047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	179	426	0	ENST00000219905.7:c.8767C>T	p.Pro2923Ser	p.P2923S	ENST00000219905	NM_001164273.1	2923	Cca/Tca																																																																														
BLM	0	MSKCC	GRCh37	15	91304415	91304415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	219	494	0	ENST00000355112.3:c.1812G>T	p.Lys604Asn	p.K604N	ENST00000355112	NM_000057.2	604	aaG/aaT																																																																														
TSC2	0	MSKCC	GRCh37	16	2098705	2098705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	126	617	0	ENST00000219476.3:c.89C>T	p.Ser30Phe	p.S30F	ENST00000219476	NM_000548.3	30	tCt/tTt																																																																														
TSC2	0	MSKCC	GRCh37	16	2108852	2108852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	96	601	0	ENST00000219476.3:c.953C>T	p.Ser318Phe	p.S318F	ENST00000219476	NM_000548.3	318	tCt/tTt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827277	72827277	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	137	585	0	ENST00000268489.5:c.9304G>C	p.Asp3102His	p.D3102H	ENST00000268489	NM_006885.3	3102	Gac/Cac																																																																														
NCOR1	0	MSKCC	GRCh37	17	16075208	16075208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	224	540	0	ENST00000268712.3:c.344C>G	p.Ser115Cys	p.S115C	ENST00000268712	NM_006311.3	115	tCt/tGt																																																																														
NF1	0	MSKCC	GRCh37	17	29664473	29664473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	140	621	1	ENST00000358273.4:c.6515C>T	p.Ser2172Leu	p.S2172L	ENST00000358273	NM_001042492.2	2172	tCa/tTa																																																																														
YES1	0	MSKCC	GRCh37	18	742956	742956	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	313	574	0	ENST00000314574.4:c.1022A>G	p.Glu341Gly	p.E341G	ENST00000314574	NM_005433.3	341	gAa/gGa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575200	48575200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	96	397	0	ENST00000342988.3:c.394C>G	p.His132Asp	p.H132D	ENST00000342988	NM_005359.5	132	Cac/Gac																																																																														
STK11	0	MSKCC	GRCh37	19	1223132	1223132	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	270	630	0	ENST00000326873.7:c.1069G>C	p.Glu357Gln	p.E357Q	ENST00000326873	NM_000455.4	357	Gag/Cag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2180711	2180711	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	266	569	1	ENST00000398665.3:c.82-1G>T		p.X28_splice	ENST00000398665	NM_032482.2	28																																																																															
PTPRS	0	MSKCC	GRCh37	19	5243960	5243960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	223	520	0	ENST00000357368.4:c.1522G>T	p.Gly508Cys	p.G508C	ENST00000357368	NM_002850.3	508	Ggc/Tgc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11105503	11105503	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	192	484	0	ENST00000344626.4:c.1420-1G>T		p.X474_splice	ENST00000344626	NM_003072.3	474																																																																															
ERBB4	0	MSKCC	GRCh37	2	212248362	212248362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	76	268	0	ENST00000342788.4:c.3905G>A	p.Arg1302Lys	p.R1302K	ENST00000342788	NM_005235.2	1302	aGa/aAa																																																																														
INHA	0	MSKCC	GRCh37	2	220440233	220440233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	137	664	1	ENST00000243786.2:c.1086C>A	p.His362Gln	p.H362Q	ENST00000243786	NM_002191.3	362	caC/caA																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944527	40944527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	130	580	0	ENST00000373198.4:c.1975G>T	p.Asp659Tyr	p.D659Y	ENST00000373198	NM_133170.3	659	Gat/Tat																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121033	29121033	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	314	641	0	ENST00000328354.6:c.524T>C	p.Val175Ala	p.V175A	ENST00000328354	NM_007194.3	175	gTa/gCa																																																																														
TP63	0	MSKCC	GRCh37	3	189582070	189582070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	247	570	0	ENST00000264731.3:c.629C>A	p.Pro210His	p.P210H	ENST00000264731	NM_003722.4	210	cCc/cAc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153250862	153250862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	210	547	0	ENST00000281708.4:c.1198G>A	p.Asp400Asn	p.D400N	ENST00000281708	NM_033632.3	400	Gac/Aac																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950435	38950435	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	205	431	0	ENST00000357387.3:c.3515C>G	p.Thr1172Ser	p.T1172S	ENST00000357387	NM_152756.3	1172	aCt/aGt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176517466	176517466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	243	634	2	ENST00000292408.4:c.167G>T	p.Cys56Phe	p.C56F	ENST00000292408	NM_213647.1	56	tGc/tTc																																																																														
FLT4	0	MSKCC	GRCh37	5	180056706	180056706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	215	539	2	ENST00000261937.6:c.806C>A	p.Pro269Gln	p.P269Q	ENST00000261937	NM_182925.4	269	cCa/cAa																																																																														
LATS1	0	MSKCC	GRCh37	6	149983286	149983286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	313	615	0	ENST00000253339.5:c.2972G>T	p.Gly991Val	p.G991V	ENST00000253339		991	gGa/gTa																																																																														
ESR1	0	MSKCC	GRCh37	6	152163775	152163775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	103	531	1	ENST00000206249.3:c.496G>A	p.Ala166Thr	p.A166T	ENST00000206249	NM_000125.3	166	Gcc/Acc																																																																														
ESR1	0	MSKCC	GRCh37	6	152265452	152265452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	218	536	0	ENST00000206249.3:c.905A>T	p.Lys302Met	p.K302M	ENST00000206249	NM_000125.3	302	aAg/aTg																																																																														
CARD11	0	MSKCC	GRCh37	7	2953041	2953041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	238	627	1	ENST00000396946.4:c.2899C>A	p.Arg967Ser	p.R967S	ENST00000396946	NM_032415.4	967	Cgc/Agc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467634	50467634	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	98	367	0	ENST00000331340.3:c.869A>G	p.Asp290Gly	p.D290G	ENST00000331340	NM_006060.4	290	gAc/gGc																																																																														
HGF	0	MSKCC	GRCh37	7	81334963	81334963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	118	500	1	ENST00000222390.5:c.1864T>A	p.Leu622Met	p.L622M	ENST00000222390	NM_000601.4	622	Ttg/Atg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508509	106508509	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	90	237	0	ENST00000359195.3:c.503T>A	p.Val168Glu	p.V168E	ENST00000359195	NM_002649.2	168	gTg/gAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151849873	151849874	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	184	404	0	ENST00000262189.6:c.12442_12443delinsTT	p.Pro4148Leu	p.P4148L	ENST00000262189	NM_170606.2	4148	CCg/TTg																																																																														
SOX17	0	MSKCC	GRCh37	8	55371682	55371684	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TGC			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	84	542	1	ENST00000297316.4:c.372_374delinsTGC	p.Arg125Ala	p.R125A	ENST00000297316	NM_022454.3	124	ctGCGc/ctTGCc																																																																														
SOX17	0	MSKCC	GRCh37	8	55371726	55371726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	80	437	0	ENST00000297316.4:c.416C>G	p.Pro139Arg	p.P139R	ENST00000297316	NM_022454.3	139	cCg/cGg																																																																														
PREX2	0	MSKCC	GRCh37	8	68981334	68981334	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	152	558	0	ENST00000288368.4:c.1406T>G	p.Phe469Cys	p.F469C	ENST00000288368	NM_024870.2	469	tTt/tGt																																																																														
PRDM14	0	MSKCC	GRCh37	8	70980726	70980726	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	190	641	0	ENST00000276594.2:c.742C>T	p.Gln248Ter	p.Q248*	ENST00000276594	NM_024504.3	248	Caa/Taa																																																																														
RBM10	0	MSKCC	GRCh37	X	47040965	47040965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	123	622	0	ENST00000329236.7:c.1261G>T	p.Ala421Ser	p.A421S	ENST00000329236	NM_001204466.1	421	Gcc/Tcc																																																																														
ATRX	0	MSKCC	GRCh37	X	76939274	76939274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	139	689	0	ENST00000373344.5:c.1474G>A	p.Glu492Lys	p.E492K	ENST00000373344	NM_000489.3	492	Gaa/Aaa																																																																														
ATRX	0	MSKCC	GRCh37	X	76954118	76954118	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	109	501	0	ENST00000373344.5:c.134-1G>C		p.X45_splice	ENST00000373344	NM_000489.3	45																																																																															
KMT2B	0	MSKCC	GRCh37	19	36223726	36223727	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0026187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	559	722	0	ENST00000222270.7:c.6276_6277delinsT	p.Ala2093GlnfsTer26	p.A2093Qfs*26	ENST00000222270	NM_014727.1	2092	cgGGca/cgTca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0026188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	23	494	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845633	72845633	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	86	483	0	ENST00000268489.5:c.3707A>T	p.Asn1236Ile	p.N1236I	ENST00000268489	NM_006885.3	1236	aAc/aTc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45797333	45797333	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0026190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	104	374	0	ENST00000372115.3:c.1144G>C	p.Gly382Arg	p.G382R	ENST00000372115	NM_001048171.1	382	Ggt/Cgt																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88649908	88649908	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	55	399	1	ENST00000372037.3:c.157G>T	p.Glu53Ter	p.E53*	ENST00000372037	NM_004329.2	53	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	123	572	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	114	567	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	146	665	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	214	568	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	26	505	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	109	622	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	135	601	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
KDM5A	0	MSKCC	GRCh37	12	406317	406318	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	221	729	0	ENST00000399788.2:c.4123dup	p.Cys1375LeufsTer2	p.C1375Lfs*2	ENST00000399788	NM_001042603.1	1375	tgt/tTgt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32953632	32953633	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	115	527	0	ENST00000380152.3:c.8940dupA	p.Glu2981ArgfsTer37	p.E2981Rfs*37	ENST00000380152		2978	tca/tcAa																																																																														
BCL6	0	MSKCC	GRCh37	3	187446269	187446270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	130	619	0	ENST00000232014.4:c.1418dupC	p.Lys474GlufsTer26	p.K474Efs*26	ENST00000232014	NM_001130845.1	473	ccg/ccCg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	127	709	4	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	149	662	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	68	272	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
TSHR	0	MSKCC	GRCh37	14	81554355	81554355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	107	586	0	ENST00000298171.2:c.379del	p.Leu127SerfsTer2	p.L127Sfs*2	ENST00000298171	NM_000369.2	125	ctC/ct																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	46	408	1	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	90	419	6	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
TSC1	0	MSKCC	GRCh37	9	135781141	135781141	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	163	679	0	ENST00000298552.3:c.1824del	p.Phe608LeufsTer21	p.F608Lfs*21	ENST00000298552	NM_001162426.1	608	ttT/tt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	185	744	5	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	150	519	2	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																																																														
BRAF	0	MSKCC	GRCh37	7	140434413	140434413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	127	582	0	ENST00000288602.6:c.2285C>T	p.Ala762Val	p.A762V	ENST00000288602	NM_004333.4	762	gCg/gTg																																																																														
PARP1	0	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	134	588	2	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134884908	134884908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202034365		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	125	534	0	ENST00000398015.3:c.1684G>A	p.Val562Ile	p.V562I	ENST00000398015	NM_004441.4	562	Gtc/Atc																																																																														
JUN	0	MSKCC	GRCh37	1	59248123	59248123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	30	100	0	ENST00000371222.2:c.620C>A	p.Pro207Gln	p.P207Q	ENST00000371222	NM_002228.3	207	cCg/cAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	196	585	2	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																														
CRKL	0	MSKCC	GRCh37	22	21304066	21304066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	203	703	2	ENST00000354336.3:c.845G>A	p.Arg282His	p.R282H	ENST00000354336	NM_005207.3	282	cGc/cAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	229	892	13	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993731	72993731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	63	423	4	ENST00000268489.5:c.314del	p.Pro105ArgfsTer4	p.P105Rfs*4	ENST00000268489	NM_006885.3	105	cCg/cg																																																																														
SPEN	0	MSKCC	GRCh37	1	16259043	16259043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	137	655	0	ENST00000375759.3:c.6313delG	p.Ala2105LeufsTer33	p.A2105Lfs*33	ENST00000375759	NM_015001.2	2103	aGg/ag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	115	639	0	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
BTK	0	MSKCC	GRCh37	X	100630173	100630173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141488935		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	38	669	0	ENST00000308731.7:c.100G>A	p.Val34Met	p.V34M	ENST00000308731	NM_000061.2	34	Gtg/Atg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468282	50468282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	144	657	0	ENST00000331340.3:c.1517C>T	p.Ser506Leu	p.S506L	ENST00000331340	NM_006060.4	506	tCg/tTg																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	131	551	3	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
ATR	545	MSKCC	GRCh37	3	142242899	142242899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750252420		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	176	683	1	ENST00000350721.4:c.4088C>T	p.Ala1363Val	p.A1363V	ENST00000350721	NM_001184.3	1363	gCg/gTg																																																																														
LATS2	0	MSKCC	GRCh37	13	21549394	21549394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148935054		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	97	484	1	ENST00000382592.4:c.2882G>A	p.Arg961Gln	p.R961Q	ENST00000382592	NM_014572.2	961	cGg/cAg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57466824	57466826	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	100	350	0	ENST00000371085.3:c.46_48del	p.Glu16del	p.E16del	ENST00000371085	NM_000516.4	15	GAG/-																																																																														
SOS1	0	MSKCC	GRCh37	2	39213243	39213243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	177	787	1	ENST00000402219.2:c.3724del	p.Ser1242ValfsTer37	p.S1242Vfs*37	ENST00000402219	NM_005633.3	1242	Agt/gt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375152	118375152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	95	474	0	ENST00000534358.1:c.8545C>T	p.Pro2849Ser	p.P2849S	ENST00000534358	NM_005933.3	2849	Cct/Tct																																																																														
CD276	0	MSKCC	GRCh37	15	73994829	73994829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	33	229	1	ENST00000318443.5:c.313G>A	p.Ala105Thr	p.A105T	ENST00000318443	NM_001024736.1	105	Gca/Aca																																																																														
MTOR	0	MSKCC	GRCh37	1	11303302	11303304	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	202	767	1	ENST00000361445.4:c.1279_1281del	p.Glu427del	p.E427del	ENST00000361445	NM_004958.3	427	GAG/-																																																																														
SPEN	0	MSKCC	GRCh37	1	16256232	16256232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	173	743	1	ENST00000375759.3:c.3497C>T	p.Thr1166Met	p.T1166M	ENST00000375759	NM_015001.2	1166	aCg/aTg																																																																														
DDR2	0	MSKCC	GRCh37	1	162743365	162743365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	108	434	0	ENST00000367921.3:c.1835C>T	p.Ala612Val	p.A612V	ENST00000367921	NM_006182.2	612	gCa/gTa																																																																														
NUF2	0	MSKCC	GRCh37	1	163295914	163295914	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	160	855	1	ENST00000271452.3:c.73G>T	p.Gly25Ter	p.G25*	ENST00000271452	NM_145697.2	25	Gga/Tga																																																																														
TET1	0	MSKCC	GRCh37	10	70451480	70451480	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	183	771	0	ENST00000373644.4:c.6320A>G	p.His2107Arg	p.H2107R	ENST00000373644	NM_030625.2	2107	cAt/cGt																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88659599	88659599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	187	657	0	ENST00000372037.3:c.382A>G	p.Asn128Asp	p.N128D	ENST00000372037	NM_004329.2	128	Aat/Gat																																																																														
PGR	0	MSKCC	GRCh37	11	100998234	100998234	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	65	358	0	ENST00000325455.5:c.1568T>C	p.Leu523Pro	p.L523P	ENST00000325455	NM_001202474.3	523	cTc/cCc																																																																														
RAD52	0	MSKCC	GRCh37	12	1023182	1023182	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	148	650	0	ENST00000358495.3:c.1073T>C	p.Leu358Ser	p.L358S	ENST00000358495	NM_134424.2	358	tTa/tCa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495660	56495660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	127	546	1	ENST00000267101.3:c.3850G>A	p.Ala1284Thr	p.A1284T	ENST00000267101	NM_001982.3	1284	Gca/Aca																																																																														
MSI1	0	MSKCC	GRCh37	12	120806011	120806011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	142	648	1	ENST00000257552.2:c.166del	p.Leu56Ter	p.L56*	ENST00000257552	NM_002442.3	56	Ctg/tg																																																																														
POLE	0	MSKCC	GRCh37	12	133240687	133240687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	32	727	0	ENST00000320574.5:c.2609A>G	p.Asn870Ser	p.N870S	ENST00000320574	NM_006231.2	870	aAc/aGc																																																																														
IRS2	0	MSKCC	GRCh37	13	110435790	110435790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	10	232	2	ENST00000375856.3:c.2611C>T	p.Arg871Trp	p.R871W	ENST00000375856	NM_003749.2	871	Cgg/Tgg																																																																														
IRS2	0	MSKCC	GRCh37	13	110437532	110437532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	126	644	0	ENST00000375856.3:c.869C>T	p.Ala290Val	p.A290V	ENST00000375856	NM_003749.2	290	gCc/gTc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30133062	30133062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	91	432	0	ENST00000331968.5:c.539G>A	p.Cys180Tyr	p.C180Y	ENST00000331968	NM_002742.2	180	tGt/tAt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986898	36986898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	100	314	3	ENST00000354822.5:c.791G>A	p.Gly264Asp	p.G264D	ENST00000354822	NM_001079668.2	264	gGc/gAc																																																																														
MGA	0	MSKCC	GRCh37	15	42002990	42002990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	172	749	0	ENST00000219905.7:c.2527G>A	p.Gly843Ser	p.G843S	ENST00000219905	NM_001164273.1	843	Ggt/Agt																																																																														
SLX4	0	MSKCC	GRCh37	16	3632600	3632600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	33	786	1	ENST00000294008.3:c.5248G>A	p.Ala1750Thr	p.A1750T	ENST00000294008	NM_032444.2	1750	Gcg/Acg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778167	3778167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	133	685	1	ENST00000262367.5:c.6881G>A	p.Arg2294Gln	p.R2294Q	ENST00000262367	NM_004380.2	2294	cGg/cAg																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029286	14029286	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	127	456	0	ENST00000311895.7:c.1500del	p.Lys500AsnfsTer19	p.K500Nfs*19	ENST00000311895	NM_005236.2	499	ggA/gg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81953241	81953241	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	120	413	1	ENST00000359376.3:c.2211del	p.Glu738SerfsTer12	p.E738Sfs*12	ENST00000359376	NM_002661.3	736	aCc/ac																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89357465	89357465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	161	721	0	ENST00000301030.4:c.353C>T	p.Ala118Val	p.A118V	ENST00000301030	NM_001256183.1	118	gCc/gTc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15952264	15952264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	185	771	0	ENST00000268712.3:c.6431C>T	p.Ser2144Leu	p.S2144L	ENST00000268712	NM_006311.3	2144	tCg/tTg																																																																														
STAT3	0	MSKCC	GRCh37	17	40489501	40489501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	141	661	0	ENST00000264657.5:c.749C>T	p.Ala250Val	p.A250V	ENST00000264657	NM_139276.2	250	gCc/gTc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41234583	41234583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	38	587	0	ENST00000357654.3:c.4195A>G	p.Thr1399Ala	p.T1399A	ENST00000357654	NM_007294.3	1399	Acc/Gcc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58711218	58711218	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	159	613	1	ENST00000305921.3:c.706A>G	p.Met236Val	p.M236V	ENST00000305921	NM_003620.3	236	Atg/Gtg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119773	70119803	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCCAGAGGGGGGCAGACAGCCCCCTATCG	TTGCCAGAGGGGGGCAGACAGCCCCCTATCG	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	140	604	0	ENST00000245479.2:c.775_805del	p.Leu259ThrfsTer10	p.L259Tfs*10	ENST00000245479	NM_000346.3	259	TTGCCAGAGGGGGGCAGACAGCCCCCTATCGac/ac																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732278	74732278	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	76	348	0	ENST00000359995.5:c.631A>G	p.Lys211Glu	p.K211E	ENST00000359995	NM_001195427.1	211	Aag/Gag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226433	2226433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	137	737	2	ENST00000398665.3:c.3913G>A	p.Gly1305Arg	p.G1305R	ENST00000398665	NM_032482.2	1305	Gga/Aga																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14629007	14629007	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	133	596	0	ENST00000254322.2:c.155A>G	p.Tyr52Cys	p.Y52C	ENST00000254322	NM_006145.1	52	tAc/tGc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15300195	15300195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	174	755	1	ENST00000263388.2:c.1081C>A	p.His361Asn	p.H361N	ENST00000263388	NM_000435.2	361	Cac/Aac																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302570	15302570	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	132	665	1	ENST00000263388.2:c.788C>A	p.Pro263His	p.P263H	ENST00000263388	NM_000435.2	263	cCt/cAt																																																																														
BABAM1	0	MSKCC	GRCh37	19	17387345	17387345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	177	805	0	ENST00000359435.4:c.611C>T	p.Thr204Met	p.T204M	ENST00000359435	NM_001033549.1	204	aCg/aTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221657	36221657	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	171	801	0	ENST00000222270.7:c.5326T>C	p.Tyr1776His	p.Y1776H	ENST00000222270	NM_014727.1	1776	Tat/Cat																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223319	36223327	+	inframe_deletion	In_Frame_Del	DEL	GAGCTGGCT	GAGCTGGCT	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	155	839	0	ENST00000222270.7:c.5869_5877del	p.Glu1957_Ala1959del	p.E1957_A1959del	ENST00000222270	NM_014727.1	1957	GAGCTGGCT/-																																																																														
ASXL2	0	MSKCC	GRCh37	2	25967156	25967156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201808592		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	65	378	0	ENST00000435504.4:c.2050G>A	p.Ala684Thr	p.A684T	ENST00000435504		684	Gcc/Acc																																																																														
REL	0	MSKCC	GRCh37	2	61121628	61121628	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	172	738	0	ENST00000295025.8:c.250T>G	p.Cys84Gly	p.C84G	ENST00000295025	NM_002908.2	84	Tgc/Ggc																																																																														
REL	0	MSKCC	GRCh37	2	61145678	61145678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	107	634	0	ENST00000295025.8:c.790C>T	p.Arg264Trp	p.R264W	ENST00000295025	NM_002908.2	264	Cgg/Tgg																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111881602	111881602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	158	690	0	ENST00000393256.3:c.280A>G	p.Ser94Gly	p.S94G	ENST00000393256	NM_006538.4	94	Agt/Ggt																																																																														
ACVR1	0	MSKCC	GRCh37	2	158617541	158617541	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	129	574	0	ENST00000263640.3:c.1115A>G	p.Asn372Ser	p.N372S	ENST00000263640	NM_001105.4	372	aAc/aGc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212289016	212289016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	69	519	0	ENST00000342788.4:c.2730A>G	p.Ile910Met	p.I910M	ENST00000342788	NM_005235.2	910	atA/atG																																																																														
INHA	0	MSKCC	GRCh37	2	220440141	220440141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	98	714	0	ENST00000243786.2:c.994C>A	p.Pro332Thr	p.P332T	ENST00000243786	NM_002191.3	332	Cca/Aca																																																																														
IRS1	0	MSKCC	GRCh37	2	227662980	227662980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	91	629	0	ENST00000305123.5:c.475G>A	p.Ala159Thr	p.A159T	ENST00000305123	NM_005544.2	159	Gca/Aca																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827985	40827985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	25	505	1	ENST00000373198.4:c.2443A>G	p.Arg815Gly	p.R815G	ENST00000373198	NM_133170.3	815	Agg/Ggg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40979322	40979322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	120	690	0	ENST00000373198.4:c.1811A>G	p.Asp604Gly	p.D604G	ENST00000373198	NM_133170.3	604	gAc/gGc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46262920	46262920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	146	673	0	ENST00000371998.3:c.1093T>C	p.Ser365Pro	p.S365P	ENST00000371998		365	Tca/Cca																																																																														
RAF1	0	MSKCC	GRCh37	3	12633240	12633240	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	164	684	1	ENST00000251849.4:c.1160T>G	p.Phe387Cys	p.F387C	ENST00000251849	NM_002880.3	387	tTc/tGc																																																																														
SHQ1	0	MSKCC	GRCh37	3	72866489	72866489	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	69	517	1	ENST00000325599.8:c.774T>A	p.Asn258Lys	p.N258K	ENST00000325599	NM_018130.2	258	aaT/aaA																																																																														
GATA2	0	MSKCC	GRCh37	3	128202842	128202842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	116	568	0	ENST00000341105.2:c.878G>A	p.Arg293Gln	p.R293Q	ENST00000341105	NM_032638.4	293	cGg/cAg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134968200	134968200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	23	561	0	ENST00000398015.3:c.2713C>A	p.Arg905Ser	p.R905S	ENST00000398015	NM_004441.4	905	Cgc/Agc																																																																														
ATR	0	MSKCC	GRCh37	3	142281829	142281829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	163	606	0	ENST00000350721.4:c.415C>T	p.Pro139Ser	p.P139S	ENST00000350721	NM_001184.3	139	Cct/Tct																																																																														
PRKCI	0	MSKCC	GRCh37	3	170015161	170015161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	151	714	1	ENST00000295797.4:c.1567C>T	p.Arg523Ter	p.R523*	ENST00000295797	NM_002740.5	523	Cga/Tga																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902713	1902713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	225	776	1	ENST00000382891.5:c.332C>A	p.Pro111His	p.P111H	ENST00000382891	NM_133335.3	111	cCc/cAc																																																																														
TET2	0	MSKCC	GRCh37	4	106157282	106157282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	184	653	1	ENST00000380013.4:c.2183C>T	p.Ala728Val	p.A728V	ENST00000380013	NM_001127208.2	728	gCa/gTa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332817	153332817	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	159	590	0	ENST00000281708.4:c.139C>T	p.Gln47Ter	p.Q47*	ENST00000281708	NM_033632.3	47	Caa/Taa																																																																														
FAT1	0	MSKCC	GRCh37	4	187629600	187629600	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	157	649	0	ENST00000441802.2:c.1382del	p.Pro461LeufsTer23	p.P461Lfs*23	ENST00000441802	NM_005245.3	461	cCt/ct																																																																														
APC	0	MSKCC	GRCh37	5	112177874	112177878	+	frameshift_variant	Frame_Shift_Del	DEL	TATAA	TATAA	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	90	408	0	ENST00000257430.4:c.6583_6587del	p.Tyr2195LysfsTer10	p.Y2195Kfs*10	ENST00000257430	NM_000038.5	2195	TATAAa/a																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056197	26056197	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs548795634		P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	110	471	0	ENST00000343677.2:c.460A>G	p.Thr154Ala	p.T154A	ENST00000343677	NM_005319.3	154	Aca/Gca																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056286	26056286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	33	515	0	ENST00000343677.2:c.371G>A	p.Gly124Asp	p.G124D	ENST00000343677	NM_005319.3	124	gGc/gAc																																																																														
DAXX	0	MSKCC	GRCh37	6	33288863	33288863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	112	447	0	ENST00000374542.5:c.689G>A	p.Arg230His	p.R230H	ENST00000374542	NM_001141970.1	230	cGt/cAt																																																																														
CARD11	0	MSKCC	GRCh37	7	2963940	2963941	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGA			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	106	756	0	ENST00000396946.4:c.1864_1866dup	p.Ser622dup	p.S622dup	ENST00000396946	NM_032415.4	622	-/TCC																																																																														
EGFR	0	MSKCC	GRCh37	7	55211142	55211142	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	81	631	0	ENST00000275493.2:c.385A>G	p.Lys129Glu	p.K129E	ENST00000275493	NM_005228.3	129	Aaa/Gaa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106545632	106545632	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	37	673	0	ENST00000359195.3:c.3109A>G	p.Thr1037Ala	p.T1037A	ENST00000359195	NM_002649.2	1037	Aca/Gca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879429	151879429	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	151	605	0	ENST00000262189.6:c.5516del	p.Thr1839SerfsTer10	p.T1839Sfs*10	ENST00000262189	NM_170606.2	1839	aCg/ag																																																																														
PREX2	0	MSKCC	GRCh37	8	69009342	69009342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	126	679	1	ENST00000288368.4:c.2459G>A	p.Gly820Asp	p.G820D	ENST00000288368	NM_024870.2	820	gGt/gAt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8317917	8317917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	130	500	3	ENST00000356435.5:c.5696C>T	p.Ala1899Val	p.A1899V	ENST00000356435		1899	gCc/gTc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98242267	98242267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	156	648	0	ENST00000331920.6:c.1051A>G	p.Thr351Ala	p.T351A	ENST00000331920	NM_000264.3	351	Act/Gct																																																																														
TSC1	0	MSKCC	GRCh37	9	135771998	135771998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	85	442	1	ENST00000298552.3:c.3119G>A	p.Ser1040Asn	p.S1040N	ENST00000298552	NM_001162426.1	1040	aGc/aAc																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20153854	20153854	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	148	580	0	ENST00000379607.5:c.204+2T>C		p.X68_splice	ENST00000379607	NM_001412.3	68																																																																															
AMER1	0	MSKCC	GRCh37	X	63412406	63412406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	117	794	0	ENST00000330258.3:c.761C>T	p.Ala254Val	p.A254V	ENST00000330258	NM_152424.3	254	gCc/gTc																																																																														
ATRX	0	MSKCC	GRCh37	X	76944388	76944388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	197	869	0	ENST00000373344.5:c.517G>A	p.Ala173Thr	p.A173T	ENST00000373344	NM_000489.3	173	Gct/Act																																																																														
RNF43	0	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0026197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	141	678	0	ENST00000407977.2:c.349_350delinsA	p.Arg117ThrfsTer41	p.R117Tfs*41	ENST00000407977		117	CGc/Ac																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	190	470	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																														
CARM1	0	MSKCC	GRCh37	19	11022869	11022869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	279	564	0	ENST00000327064.4:c.568G>T	p.Asp190Tyr	p.D190Y	ENST00000327064	NM_199141.1	190	Gat/Tat																																																																														
INHBA	0	MSKCC	GRCh37	7	41729478	41729478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	59	395	1	ENST00000242208.4:c.1051G>A	p.Glu351Lys	p.E351K	ENST00000242208	NM_002192.2	351	Gag/Aag																																																																														
VHL	0	MSKCC	GRCh37	3	10191477	10191478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTT			P-0026203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	15	330	0	ENST00000256474.2:c.473_474insTTCT	p.Lys159SerfsTer16	p.K159Sfs*16	ENST00000256474	NM_000551.3	157	act/acTCTTt																																																																														
BAP1	0	MSKCC	GRCh37	3	52441334	52441334	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0026203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	19	332	1	ENST00000460680.1:c.438-2A>T		p.X146_splice	ENST00000460680	NM_004656.3	146																																																																															
CARD11	0	MSKCC	GRCh37	7	2956946	2956946	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	128	457	0	ENST00000396946.4:c.2681T>G	p.Phe894Cys	p.F894C	ENST00000396946	NM_032415.4	894	tTc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	428	489	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	425	509	1	ENST00000344626.4:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000344626	NM_003072.3	882	Gaa/Aaa																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	395	438	0	ENST00000391945.4:c.713A>T	p.Asn238Ile	p.N238I	ENST00000391945	NM_000400.3	238	aAc/aTc																																																																														
IRS1	0	MSKCC	GRCh37	2	227662475	227662475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	120	303	1	ENST00000305123.5:c.980G>A	p.Arg327His	p.R327H	ENST00000305123	NM_005544.2	327	cGc/cAc																																																																														
SPEN	0	MSKCC	GRCh37	1	16256822	16256822	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	450	465	0	ENST00000375759.3:c.4087G>C	p.Asp1363His	p.D1363H	ENST00000375759	NM_015001.2	1363	Gat/Cat																																																																														
AKT3	0	MSKCC	GRCh37	1	243708883	243708883	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	202	340	0	ENST00000263826.5:c.1180G>C	p.Asp394His	p.D394H	ENST00000263826	NM_005465.4	394	Gat/Cat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421791	49421791	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	473	513	0	ENST00000301067.7:c.14515+1G>T		p.X4839_splice	ENST00000301067	NM_003482.3	4839																																																																															
KMT2D	0	MSKCC	GRCh37	12	49433004	49433004	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	429	381	2	ENST00000301067.7:c.8366+1G>A		p.X2789_splice	ENST00000301067	NM_003482.3	2789																																																																															
MGA	0	MSKCC	GRCh37	15	42057133	42057133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	476	492	0	ENST00000219905.7:c.7794G>A	p.Met2598Ile	p.M2598I	ENST00000219905	NM_001164273.1	2598	atG/atA																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779755	3779755	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	192	399	0	ENST00000262367.5:c.5293C>T	p.Gln1765Ter	p.Q1765*	ENST00000262367	NM_004380.2	1765	Cag/Tag																																																																														
INPP4A	0	MSKCC	GRCh37	2	99185101	99185101	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	285	392	0	ENST00000074304.5:c.2503G>C	p.Glu835Gln	p.E835Q	ENST00000074304	NM_001134224.1	835	Gag/Cag																																																																														
SHQ1	0	MSKCC	GRCh37	3	72881619	72881619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	163	333	0	ENST00000325599.8:c.500A>G	p.Asp167Gly	p.D167G	ENST00000325599	NM_018130.2	167	gAt/gGt																																																																														
PRKCI	0	MSKCC	GRCh37	3	170009723	170009723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	174	278	0	ENST00000295797.4:c.1285G>T	p.Asp429Tyr	p.D429Y	ENST00000295797	NM_002740.5	429	Gat/Tat																																																																														
INPP4B	0	MSKCC	GRCh37	4	143114301	143114301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	291	397	0	ENST00000262992.4:c.1120C>G	p.Gln374Glu	p.Q374E	ENST00000262992	NM_001101669.1	374	Cag/Gag																																																																														
ETV1	0	MSKCC	GRCh37	7	13946206	13946206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	254	343	1	ENST00000405192.2:c.890C>T	p.Pro297Leu	p.P297L	ENST00000405192	NM_001163147.1	297	cCa/cTa																																																																														
EGFR	0	MSKCC	GRCh37	7	55229203	55229203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	208	254	0	ENST00000275493.2:c.1510C>T	p.Gln504Ter	p.Q504*	ENST00000275493	NM_005228.3	504	Cag/Tag																																																																														
PREX2	0	MSKCC	GRCh37	8	69069611	69069611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	179	514	0	ENST00000288368.4:c.4286T>C	p.Phe1429Ser	p.F1429S	ENST00000288368	NM_024870.2	1429	tTt/tCt																																																																														
PREX2	0	MSKCC	GRCh37	8	69069619	69069619	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	171	511	1	ENST00000288368.4:c.4294C>G	p.Gln1432Glu	p.Q1432E	ENST00000288368	NM_024870.2	1432	Cag/Gag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0026206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	174	441	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	93	255	0	ENST00000397062.3:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000397062	NM_006164.4	29	Gat/Tat																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023622	27023622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	11	95	0	ENST00000324856.7:c.728C>T	p.Ala243Val	p.A243V	ENST00000324856	NM_006015.4	243	gCg/gTg																																																																														
ERCC5	0	MSKCC	GRCh37	13	103504500	103504500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	105	329	0	ENST00000355739.4:c.122del	p.Gly41GlufsTer10	p.G41Efs*10	ENST00000355739	NM_000123.3	41	Gga/ga																																																																														
CYLD	0	MSKCC	GRCh37	16	50788313	50788313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	281	585	0	ENST00000398568.2:c.891G>T	p.Leu297Phe	p.L297F	ENST00000398568	NM_001042412.1	297	ttG/ttT																																																																														
STK11	0	MSKCC	GRCh37	19	1207070	1207070	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	131	554	0	ENST00000326873.7:c.158del	p.Asp53AlafsTer11	p.D53Afs*11	ENST00000326873	NM_000455.4	53	gAc/gc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	96	298	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	353	592	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
IDH2	0	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	70	517	0	ENST00000330062.3:c.514A>G	p.Arg172Gly	p.R172G	ENST00000330062	NM_002168.2	172	Agg/Ggg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63537676	63537676	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0026209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	60	418	0	ENST00000307078.5:c.957-1G>T		p.X319_splice	ENST00000307078	NM_004655.3	319																																																																															
PPARG	0	MSKCC	GRCh37	3	12422929	12422929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	53	621	1	ENST00000287820.6:c.419G>A	p.Arg140His	p.R140H	ENST00000287820	NM_015869.4	140	cGt/cAt																																																																														
ATM	0	MSKCC	GRCh37	11	108165788	108165788	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0026210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	47	425	0	ENST00000278616.4:c.4909+2T>C		p.X1637_splice	ENST00000278616	NM_000051.3	1637																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	71	501	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KDR	0	MSKCC	GRCh37	4	55973958	55973958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	65	515	2	ENST00000263923.4:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000263923	NM_002253.2	453	cCg/cTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993375	72993378	+	frameshift_variant	Frame_Shift_Del	DEL	GCCC	GCCC	-			P-0026210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	36	559	0	ENST00000268489.5:c.667_670del	p.Gly223SerfsTer22	p.G223Sfs*22	ENST00000268489	NM_006885.3	223	GGGCtc/tc																																																																														
EGFR	0	MSKCC	GRCh37	7	55220275	55220275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	10	576	0	ENST00000275493.2:c.665G>A	p.Arg222His	p.R222H	ENST00000275493	NM_005228.3	222	cGc/cAc																																																																														
PAX5	0	MSKCC	GRCh37	9	36882058	36882058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141574393		P-0026212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	28	516	2	ENST00000358127.4:c.955G>A	p.Val319Ile	p.V319I	ENST00000358127	NM_001280556.1	319	Gtc/Atc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022332	31022332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	100	341	1	ENST00000375687.4:c.1817G>A	p.Arg606Gln	p.R606Q	ENST00000375687	NM_015338.5	606	cGg/cAg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78896552	78896552	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	141	509	0	ENST00000306801.3:c.2549T>A	p.Val850Asp	p.V850D	ENST00000306801	NM_020761.2	850	gTc/gAc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412381	63412381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	130	635	0	ENST00000330258.3:c.786G>A	p.Met262Ile	p.M262I	ENST00000330258	NM_152424.3	262	atG/atA																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0026214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	213	547	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913514		P-0026214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	292	477	0	ENST00000288135.5:c.2466T>A	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaA																																																																														
TSC1	0	MSKCC	GRCh37	9	135796748	135796748	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0026214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	441	279	0	ENST00000298552.3:c.737+2T>C		p.X246_splice	ENST00000298552	NM_001162426.1	246																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026217-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	121	629	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
MED12	0	MSKCC	GRCh37	X	70338671	70338671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026217-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			230	66	515	1	ENST00000374080.3:c.67G>T	p.Asp23Tyr	p.D23Y	ENST00000374080		23	Gat/Tat																																																																														
INSR	0	MSKCC	GRCh37	19	7122996	7122996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026217-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	82	639	1	ENST00000302850.5:c.3263G>A	p.Arg1088His	p.R1088H	ENST00000302850	NM_000208.2	1088	cGc/cAc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469996	25469996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026217-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	46	525	2	ENST00000264709.3:c.1046C>T	p.Ser349Leu	p.S349L	ENST00000264709	NM_175629.2	349	tCg/tTg																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121031	29121031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026217-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	109	639	1	ENST00000328354.6:c.526G>A	p.Gly176Arg	p.G176R	ENST00000328354	NM_007194.3	176	Ggg/Agg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807294	3807294	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026217-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	25	488	0	ENST00000262367.5:c.3693del	p.Asn1232IlefsTer18	p.N1232Ifs*18	ENST00000262367	NM_004380.2	1231	caG/ca																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	510	420	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	301	460	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	560	424	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	333	435	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	257	349	8	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	297	504	0	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032048	26032048	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	214	306	0	ENST00000244661.2:c.241A>G	p.Thr81Ala	p.T81A	ENST00000244661	NM_003537.3	81	Acc/Gcc																																																																														
ATRX	0	MSKCC	GRCh37	X	76874315	76874316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	168	513	0	ENST00000373344.5:c.5406dup	p.Arg1803ThrfsTer7	p.R1803Tfs*7	ENST00000373344	NM_000489.3	1802	-/A																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15289908	15289908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	364	498	2	ENST00000263388.2:c.3646G>A	p.Ala1216Thr	p.A1216T	ENST00000263388	NM_000435.2	1216	Gcg/Acg																																																																														
GLI1	0	MSKCC	GRCh37	12	57861143	57861143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	338	474	0	ENST00000228682.2:c.940C>T	p.Arg314Cys	p.R314C	ENST00000228682	NM_005269.2	314	Cgc/Tgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	412	454	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
FAT1	0	MSKCC	GRCh37	4	187534484	187534484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	175	274	0	ENST00000441802.2:c.9242C>T	p.Thr3081Met	p.T3081M	ENST00000441802	NM_005245.3	3081	aCg/aTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133981	38133981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	267	536	0	ENST00000317025.8:c.3905del	p.Asn1302MetfsTer4	p.N1302Mfs*4	ENST00000317025	NM_023034.1	1302	aAt/at																																																																														
FGFR3	0	MSKCC	GRCh37	4	1801064	1801064	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2305178		P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	387	531	0	ENST00000260795.2:c.193G>A	p.Gly65Arg	p.G65R	ENST00000260795		65	Ggg/Agg																																																																														
SPEN	0	MSKCC	GRCh37	1	16203172	16203172	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	271	445	1	ENST00000375759.3:c.880A>G	p.Ser294Gly	p.S294G	ENST00000375759	NM_015001.2	294	Agc/Ggc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912140	114912140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	381	478	2	ENST00000543371.1:c.1210C>T	p.Arg404Trp	p.R404W	ENST00000543371	NM_001198531.1	404	Cgg/Tgg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64129351	64129351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	295	430	3	ENST00000334205.4:c.788del	p.Pro263LeufsTer112	p.P263Lfs*112	ENST00000334205	NM_003942.2	261	ttC/tt																																																																														
ARID2	0	MSKCC	GRCh37	12	46254617	46254617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	244	457	0	ENST00000334344.6:c.4807G>A	p.Val1603Met	p.V1603M	ENST00000334344	NM_152641.2	1603	Gtg/Atg																																																																														
DIS3	0	MSKCC	GRCh37	13	73335837	73335837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	204	349	0	ENST00000377767.4:c.2458C>T	p.Arg820Trp	p.R820W	ENST00000377767	NM_014953.3	820	Cgg/Tgg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830672	72830672	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	342	482	1	ENST00000268489.5:c.5909del	p.Lys1970ArgfsTer27	p.K1970Rfs*27	ENST00000268489	NM_006885.3	1970	aAg/ag																																																																														
NF1	0	MSKCC	GRCh37	17	29576120	29576120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	277	467	0	ENST00000358273.4:c.4093T>C	p.Cys1365Arg	p.C1365R	ENST00000358273	NM_001042492.2	1365	Tgc/Cgc																																																																														
TCF3	0	MSKCC	GRCh37	19	1625614	1625616	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	296	491	0	ENST00000344749.5:c.458_460del	p.Tyr153del	p.Y153del	ENST00000344749	NM_001136139.2	153	tACTcc/tcc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794358	242794358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	285	466	0	ENST00000334409.5:c.584C>T	p.Ala195Val	p.A195V	ENST00000334409	NM_005018.2	195	gCc/gTc																																																																														
KIT	0	MSKCC	GRCh37	4	55595632	55595632	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146337870		P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	137	304	0	ENST00000288135.5:c.2122C>T	p.His708Tyr	p.H708Y	ENST00000288135	NM_000222.2	708	Cat/Tat																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245396	153245396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	296	486	0	ENST00000281708.4:c.1795G>A	p.Ala599Thr	p.A599T	ENST00000281708	NM_033632.3	599	Gca/Aca																																																																														
MSH3	0	MSKCC	GRCh37	5	80150113	80150113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	168	505	0	ENST00000265081.6:c.2978C>T	p.Thr993Ile	p.T993I	ENST00000265081	NM_002439.4	993	aCa/aTa																																																																														
RASA1	0	MSKCC	GRCh37	5	86564671	86564671	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	310	456	2	ENST00000274376.6:c.407del	p.Pro136LeufsTer38	p.P136Lfs*38	ENST00000274376	NM_002890.2	135	Ccc/cc																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031903	26031903	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	135	245	0	ENST00000244661.2:c.386G>C	p.Arg129Pro	p.R129P	ENST00000244661	NM_003537.3	129	cGc/cCc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157488298	157488298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	232	336	0	ENST00000346085.5:c.3004G>A	p.Ala1002Thr	p.A1002T	ENST00000346085	NM_020732.3	1002	Gcc/Acc																																																																														
INHBA	0	MSKCC	GRCh37	7	41739585	41739585	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	167	235	0	ENST00000242208.4:c.388G>T	p.Gly130Ter	p.G130*	ENST00000242208	NM_002192.2	130	Gga/Tga																																																																														
MYC	0	MSKCC	GRCh37	8	128753187	128753187	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	203	356	0	ENST00000377970.2:c.1348C>G	p.Arg450Gly	p.R450G	ENST00000377970	NM_002467.4	450	Cgg/Ggg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145742073	145742073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	259	490	0	ENST00000428558.2:c.430G>T	p.Gly144Cys	p.G144C	ENST00000428558	NM_004260.3	144	Ggt/Tgt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53243975	53243975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	386	570	1	ENST00000375401.3:c.1018C>A	p.Leu340Met	p.L340M	ENST00000375401	NM_004187.3	340	Ctg/Atg																																																																														
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014263-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	87	633	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																														
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015094-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	317	551	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391511	139391511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	190	879	1	ENST00000277541.6:c.6680C>T	p.Pro2227Leu	p.P2227L	ENST00000277541	NM_017617.3	2227	cCg/cTg																																																																														
WT1	0	MSKCC	GRCh37	11	32439195	32439195	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			169	227	397	0	ENST00000332351.3:c.878A>G	p.Asn293Ser	p.N293S	ENST00000332351	NM_024426.4	293	aAt/aGt																																																																														
ATM	0	MSKCC	GRCh37	11	108117756	108117756	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	350	357	0	ENST00000278616.4:c.967A>G	p.Ile323Val	p.I323V	ENST00000278616	NM_000051.3	323	Ata/Gta																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39550380	39550380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	217	337	0	ENST00000262039.4:c.491G>C	p.Ser164Thr	p.S164T	ENST00000262039	NM_002647.2	164	aGt/aCt																																																																														
ABL1	0	MSKCC	GRCh37	9	133760358	133760358	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064160		P-0018779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	298	580	0	ENST00000318560.5:c.2681G>A	p.Arg894Lys	p.R894K	ENST00000318560	NM_005157.4	894	aGg/aAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425830	49425830	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018779-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	133	416	0	ENST00000301067.7:c.12658C>T	p.Gln4220Ter	p.Q4220*	ENST00000301067	NM_003482.3	4220	Cag/Tag																																																																														
EPAS1	0	MSKCC	GRCh37	2	46603773	46603773	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023493-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			806	521	640	0	ENST00000263734.3:c.1130G>C	p.Ser377Thr	p.S377T	ENST00000263734	NM_001430.4	377	aGt/aCt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80336345	80336345	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023493-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	232	463	0	ENST00000286548.4:c.974A>T	p.Tyr325Phe	p.Y325F	ENST00000286548	NM_002072.3	325	tAc/tTc																																																																														
NUP93	0	MSKCC	GRCh37	16	56878466	56878466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025138-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			728	379	444	1	ENST00000308159.5:c.2405G>A	p.Arg802Gln	p.R802Q	ENST00000308159	NM_014669.4	802	cGa/cAa																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540229	23540230	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCC			P-0025138-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	153	406	0	ENST00000380871.4:c.168_173dup	p.Pro62_Glu63dup	p.P62_E63dup	ENST00000380871	NM_006167.3	62	cca/ccGGAGCCa																																																																														
RBM10	0	MSKCC	GRCh37	X	47041596	47041596	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025138-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	467	332	0	ENST00000329236.7:c.1587C>G	p.Tyr529Ter	p.Y529*	ENST00000329236	NM_001204466.1	529	taC/taG																																																																														
VHL	0	MSKCC	GRCh37	3	10191469	10191469	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs5030816		P-0025849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	45	435	0	ENST00000256474.2:c.464-2A>G		p.X155_splice	ENST00000256474	NM_000551.3	155																																																																															
MET	0	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0025852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	240	825	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
DROSHA	0	MSKCC	GRCh37	5	31401640	31401640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	47	495	1	ENST00000344624.3:c.4024C>T	p.Arg1342Trp	p.R1342W	ENST00000344624		1342	Cgg/Tgg																																																																														
BTK	0	MSKCC	GRCh37	X	100614298	100614298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	44	555	0	ENST00000308731.7:c.877del	p.Gln293AsnfsTer3	p.Q293Nfs*3	ENST00000308731	NM_000061.2	293	Caa/aa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	453	434	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EZH2	0	MSKCC	GRCh37	7	148508728	148508728	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	234	411	0	ENST00000320356.2:c.1936T>A	p.Tyr646Asn	p.Y646N	ENST00000320356	NM_004456.4	646	Tac/Aac																																																																														
ARID2	0	MSKCC	GRCh37	12	46243484	46243484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	437	397	0	ENST00000334344.6:c.1837C>T	p.Gln613Ter	p.Q613*	ENST00000334344	NM_152641.2	613	Cag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097132	11097132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	263	550	1	ENST00000344626.4:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000344626	NM_003072.3	208	cGg/cAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151949093	151949120	+	frameshift_variant	Frame_Shift_Del	DEL	TACAATACATGCAGATATACTCTTCTTT	TACAATACATGCAGATATACTCTTCTTT	AA			P-0025853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	247	554	3	ENST00000262189.6:c.1525_1552delinsTT	p.Lys509LeufsTer6	p.K509Lfs*6	ENST00000262189	NM_170606.2	509	AAAGAAGAGTATATCTGCATGTATTGTAaa/TTaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485927	8485927	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	182	371	0	ENST00000356435.5:c.2890C>G	p.Pro964Ala	p.P964A	ENST00000356435		964	Ccc/Gcc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226162	53226186	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGGCAGTGAGGCCAGGGCCTCAC	GAGGGCAGTGAGGCCAGGGCCTCAC	-			P-0025853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	266	264	0	ENST00000375401.3:c.2663_2687del	p.Arg888ProfsTer39	p.R888Pfs*39	ENST00000375401	NM_004187.3	888	cGTGAGGCCCTGGCCTCACTGCCCTCc/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	68	557	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	108	764	0	ENST00000269305.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000269305	NM_001126112.2	274	Gtt/Ctt																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281257	49281291	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAATTGGATATTTGGAGACCTGGCCTGCAGGAT	TCCAATTGGATATTTGGAGACCTGGCCTGCAGGAT	-			P-0025856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	178	695	2	ENST00000282018.3:c.305_339del	p.Ser102TyrfsTer66	p.S102Yfs*66	ENST00000282018	NM_020377.2	102	TCCAATTGGATATTTGGAGACCTGGCCTGCAGGATt/t																																																																														
MSH6	0	MSKCC	GRCh37	2	48010533	48010544	+	inframe_deletion	In_Frame_Del	DEL	GGCCTGGGCCCA	GGCCTGGGCCCA	-			P-0025856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	51	282	0	ENST00000234420.5:c.165_176del	p.Gly56_Pro59del	p.G56_P59del	ENST00000234420	NM_000179.2	54	gGGCCTGGGCCCAgg/ggg																																																																														
SRC	0	MSKCC	GRCh37	20	36028530	36028530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	84	726	1	ENST00000358208.4:c.872G>A	p.Gly291Asp	p.G291D	ENST00000358208		291	gGt/gAt																																																																														
INHA	0	MSKCC	GRCh37	2	220437266	220437266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	151	837	1	ENST00000243786.2:c.170G>A	p.Arg57Gln	p.R57Q	ENST00000243786	NM_002191.3	57	cGg/cAg																																																																														
AXIN1	0	MSKCC	GRCh37	16	359986	359986	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	210	632	0	ENST00000262320.3:c.1103T>G	p.Leu368Arg	p.L368R	ENST00000262320	NM_003502.3	368	cTa/cGa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11121113	11121113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	440	665	0	ENST00000344626.4:c.2180G>T	p.Gly727Val	p.G727V	ENST00000344626	NM_003072.3	727	gGc/gTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8340422	8340422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	62	486	0	ENST00000356435.5:c.5174C>T	p.Thr1725Ile	p.T1725I	ENST00000356435		1725	aCt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	46	442	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	52	338	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
MGA	0	MSKCC	GRCh37	15	42046766	42046766	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	67	451	1	ENST00000219905.7:c.7139+1G>A		p.X2380_splice	ENST00000219905	NM_001164273.1	2380																																																																															
BCL2	0	MSKCC	GRCh37	18	60985802	60985802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	38	238	0	ENST00000333681.4:c.98G>C	p.Gly33Ala	p.G33A	ENST00000333681		33	gGa/gCa																																																																														
TET1	0	MSKCC	GRCh37	10	70406013	70406013	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	87	563	0	ENST00000373644.4:c.3529del	p.Glu1177LysfsTer15	p.E1177Kfs*15	ENST00000373644	NM_030625.2	1176	tGg/tg																																																																														
NF1	0	MSKCC	GRCh37	17	29508438	29508438	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	46	317	0	ENST00000358273.4:c.587-2A>G		p.X196_splice	ENST00000358273	NM_001042492.2	196																																																																															
NF1	0	MSKCC	GRCh37	17	29653159	29653159	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	35	269	0	ENST00000358273.4:c.5157A>G	p.Ile1719Met	p.I1719M	ENST00000358273	NM_001042492.2	1719	atA/atG																																																																														
STAT5B	0	MSKCC	GRCh37	17	40353757	40353757	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	40	431	0	ENST00000293328.3:c.2363G>T	p.Ter788LeuextTer25	p.*788Lext*25	ENST00000293328	NM_012448.3	788	tGa/tTa																																																																														
EZH1	0	MSKCC	GRCh37	17	40864369	40864370	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	100	578	3	ENST00000428826.2:c.1338_1339delinsAT	p.His446_Gly447delinsGlnCys	p.H446_G447delinsQC	ENST00000428826		446	caTGgc/caATgc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39637960	39637960	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	95	512	0	ENST00000262039.4:c.2377G>T	p.Glu793Ter	p.E793*	ENST00000262039	NM_002647.2	793	Gag/Tag																																																																														
ALK	0	MSKCC	GRCh37	2	29541234	29541235	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	78	486	2	ENST00000389048.3:c.1582_1583delinsTT	p.Ala528Phe	p.A528F	ENST00000389048	NM_004304.4	528	GCt/TTt																																																																														
VEGFA	0	MSKCC	GRCh37	6	43749823	43749823	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	55	284	0	ENST00000523873.1:c.676A>T	p.Arg226Ter	p.R226*	ENST00000523873		226	Aga/Tga																																																																														
EPHA7	0	MSKCC	GRCh37	6	94128986	94128986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	67	390	0	ENST00000369303.4:c.74G>T	p.Gly25Val	p.G25V	ENST00000369303	NM_004440.3	25	gGg/gTg																																																																														
LATS1	0	MSKCC	GRCh37	6	150005209	150005209	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	36	370	1	ENST00000253339.5:c.1016A>T	p.Asn339Ile	p.N339I	ENST00000253339		339	aAc/aTc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222749	53222749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	91	658	0	ENST00000375401.3:c.4187G>T	p.Arg1396Leu	p.R1396L	ENST00000375401	NM_004187.3	1396	cGg/cTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63410463	63410463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	67	525	0	ENST00000330258.3:c.2704C>A	p.Leu902Met	p.L902M	ENST00000330258	NM_152424.3	902	Ctg/Atg																																																																														
AMER1	0	MSKCC	GRCh37	X	63410537	63410537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	80	541	0	ENST00000330258.3:c.2630G>T	p.Gly877Val	p.G877V	ENST00000330258	NM_152424.3	877	gGc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	35	246	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	142	495	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	109	322	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	129	409	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
IKBKE	0	MSKCC	GRCh37	1	206647680	206647680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	74	346	0	ENST00000367120.3:c.94G>A	p.Gly32Arg	p.G32R	ENST00000367120	NM_014002.3	32	Gga/Aga																																																																														
PRKD1	0	MSKCC	GRCh37	14	30396528	30396528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	19	458	0	ENST00000331968.5:c.191T>A	p.Leu64Gln	p.L64Q	ENST00000331968	NM_002742.2	64	cTg/cAg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482815	67482815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	208	468	0	ENST00000327367.4:c.1219C>T	p.Leu407Phe	p.L407F	ENST00000327367	NM_005902.3	407	Ctt/Ttt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244068	5244068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	179	634	1	ENST00000357368.4:c.1414G>A	p.Val472Met	p.V472M	ENST00000357368	NM_002850.3	472	Gtg/Atg																																																																														
ALK	0	MSKCC	GRCh37	2	29419706	29419706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	55	404	0	ENST00000389048.3:c.4094G>T	p.Cys1365Phe	p.C1365F	ENST00000389048	NM_004304.4	1365	tGc/tTc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468364	89468364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	61	204	0	ENST00000336596.2:c.1898G>T	p.Gly633Val	p.G633V	ENST00000336596	NM_005233.5	633	gGa/gTa																																																																														
ATR	0	MSKCC	GRCh37	3	142186834	142186834	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	19	366	0	ENST00000350721.4:c.6629A>C	p.Lys2210Thr	p.K2210T	ENST00000350721	NM_001184.3	2210	aAg/aCg																																																																														
APC	0	MSKCC	GRCh37	5	112173622	112173623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	141	270	0	ENST00000257430.4:c.2333dup	p.Asn778LysfsTer10	p.N778Kfs*10	ENST00000257430	NM_000038.5	777	-/A																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15838412	15838412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	128	193	0	ENST00000307771.7:c.910G>A	p.Val304Met	p.V304M	ENST00000307771	NM_005089.3	304	Gtg/Atg																																																																														
APC	0	MSKCC	GRCh37	5	112173625	112173625	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	149	269	0	ENST00000257430.4:c.2334T>A	p.Asn778Lys	p.N778K	ENST00000257430	NM_000038.5	778	aaT/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0025950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	536	494	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031883	26031884	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0025950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	29	146	0	ENST00000244661.2:c.405_406delAG	p.Arg135SerfsTer12	p.R135Sfs*12	ENST00000244661	NM_003537.3	135	agAGcg/agcg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9784049	9784051	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0025950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	51	424	0	ENST00000377346.4:c.2620_2622del	p.Glu874del	p.E874del	ENST00000377346	NM_005026.3	873	GAG/-																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911591	114911591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	38	432	0	ENST00000543371.1:c.1109C>G	p.Ala370Gly	p.A370G	ENST00000543371	NM_001198531.1	370	gCt/gGt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118392694	118392694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	146	334	0	ENST00000534358.1:c.11726A>G	p.Asn3909Ser	p.N3909S	ENST00000534358	NM_005933.3	3909	aAt/aGt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851780	134851780	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	54	392	0	ENST00000398015.3:c.1186C>A	p.Leu396Met	p.L396M	ENST00000398015	NM_004441.4	396	Ctg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	87	494	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	125	530	2	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41197783	41197783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	61	489	1	ENST00000357654.3:c.5504G>A	p.Arg1835Gln	p.R1835Q	ENST00000357654	NM_007294.3	1835	cGa/cAa																																																																														
RHOA	0	MSKCC	GRCh37	3	49397740	49397740	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	121	529	0	ENST00000418115.1:c.484A>G	p.Lys162Glu	p.K162E	ENST00000418115	NM_001664.2	162	Aag/Gag																																																																														
PRDM1	0	MSKCC	GRCh37	6	106547329	106547329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	94	425	1	ENST00000369096.4:c.566C>T	p.Pro189Leu	p.P189L	ENST00000369096	NM_001198.3	189	cCc/cTc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223487	53223487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	114	441	2	ENST00000375401.3:c.3872G>A	p.Arg1291His	p.R1291H	ENST00000375401	NM_004187.3	1291	cGc/cAc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177626	56177626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	158	337	0	ENST00000399503.3:c.2599G>A	p.Glu867Lys	p.E867K	ENST00000399503	NM_005921.1	867	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	49	186	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
JAK1	0	MSKCC	GRCh37	1	65321245	65321245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	232	467	0	ENST00000342505.4:c.1595G>A	p.Arg532His	p.R532H	ENST00000342505	NM_002227.2	532	cGc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	180	292	0	ENST00000371953.3:c.275A>G	p.Asp92Gly	p.D92G	ENST00000371953	NM_000314.4	92	gAc/gGc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157469823	157469823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	231	565	0	ENST00000346085.5:c.2617G>A	p.Gly873Ser	p.G873S	ENST00000346085	NM_020732.3	873	Ggt/Agt																																																																														
SETD2	0	MSKCC	GRCh37	3	47103828	47103828	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	316	335	1	ENST00000409792.3:c.6118C>T	p.Arg2040Ter	p.R2040*	ENST00000409792	NM_014159.6	2040	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	189	322	3	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	239	502	0	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																														
MST1R	0	MSKCC	GRCh37	3	49932714	49932714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144584611		P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	287	703	1	ENST00000296474.3:c.3157C>T	p.Arg1053Trp	p.R1053W	ENST00000296474	NM_002447.2	1053	Cgg/Tgg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31372633	31372633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149520896		P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	224	518	1	ENST00000328111.2:c.274C>T	p.Arg92Trp	p.R92W	ENST00000328111	NM_006892.3	92	Cgg/Tgg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385183	41385183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	261	516	2	ENST00000373198.4:c.778C>T	p.Arg260Trp	p.R260W	ENST00000373198	NM_133170.3	260	Cgg/Tgg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138374251	138374251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	247	420	0	ENST00000289153.2:c.3193C>T	p.Arg1065Trp	p.R1065W	ENST00000289153	NM_006219.2	1065	Cgg/Tgg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993013	72993014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	377	673	0	ENST00000268489.5:c.1031dup	p.Asn344LysfsTer13	p.N344Kfs*13	ENST00000268489	NM_006885.3	344	aac/aaAc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561424	9561424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	229	382	1	ENST00000353224.5:c.358G>A	p.Ala120Thr	p.A120T	ENST00000353224	NM_177990.2	120	Gcg/Acg																																																																														
MGA	0	MSKCC	GRCh37	15	42052626	42052626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	224	418	1	ENST00000219905.7:c.7297C>T	p.Arg2433Trp	p.R2433W	ENST00000219905	NM_001164273.1	2433	Cgg/Tgg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15965090	15965090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	184	335	1	ENST00000268712.3:c.5506G>A	p.Val1836Met	p.V1836M	ENST00000268712	NM_006311.3	1836	Gtg/Atg																																																																														
CDC73	0	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	129	286	0	ENST00000367435.3:c.440G>A	p.Arg147His	p.R147H	ENST00000367435	NM_024529.4	147	cGc/cAc																																																																														
IRS2	0	MSKCC	GRCh37	13	110435004	110435004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	288	715	0	ENST00000375856.3:c.3397G>A	p.Ala1133Thr	p.A1133T	ENST00000375856	NM_003749.2	1133	Gcc/Acc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060912	38060912	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	194	371	0	ENST00000250448.2:c.1077delC	p.Ile360Ter	p.I360*	ENST00000250448	NM_004496.3	359	ccC/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	324	691	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
ATRX	0	MSKCC	GRCh37	X	76939663	76939663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	267	284	0	ENST00000373344.5:c.1085C>T	p.Thr362Ile	p.T362I	ENST00000373344	NM_000489.3	362	aCc/aTc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71943788	71943788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	253	586	0	ENST00000298229.2:c.1831C>T	p.Arg611Cys	p.R611C	ENST00000298229	NM_001567.3	611	Cgc/Tgc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98240351	98240351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	194	359	0	ENST00000331920.6:c.1333G>A	p.Gly445Ser	p.G445S	ENST00000331920	NM_000264.3	445	Ggc/Agc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	536	420	9	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427950	49427950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	238	552	1	ENST00000301067.7:c.10640G>A	p.Arg3547His	p.R3547H	ENST00000301067	NM_003482.3	3547	cGc/cAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187541507	187541507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	158	373	0	ENST00000441802.2:c.6233C>T	p.Ala2078Val	p.A2078V	ENST00000441802	NM_005245.3	2078	gCg/gTg																																																																														
SMO	0	MSKCC	GRCh37	7	128852212	128852212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	589	695	4	ENST00000249373.3:c.2284C>T	p.Arg762Cys	p.R762C	ENST00000249373	NM_005631.4	762	Cgc/Tgc																																																																														
MDM4	0	MSKCC	GRCh37	1	204515952	204515952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	201	410	1	ENST00000367182.3:c.850C>A	p.Leu284Met	p.L284M	ENST00000367182	NM_001278516.1	284	Ctg/Atg																																																																														
FGF4	0	MSKCC	GRCh37	11	69588174	69588174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	243	553	0	ENST00000168712.1:c.524C>T	p.Pro175Leu	p.P175L	ENST00000168712	NM_002007.2	175	cCc/cTc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374788	118374789	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	204	339	0	ENST00000534358.1:c.8185_8186del	p.Ser2729Ter	p.S2729*	ENST00000534358	NM_005933.3	2727	acAGag/acag																																																																														
KRAS	0	MSKCC	GRCh37	12	25368467	25368467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	181	399	0	ENST00000256078.4:c.478G>A	p.Val160Met	p.V160M	ENST00000256078	NM_033360.2	160	Gtg/Atg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420432	49420432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	264	521	0	ENST00000301067.7:c.15317G>A	p.Arg5106His	p.R5106H	ENST00000301067	NM_003482.3	5106	cGc/cAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49437176	49437176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	236	568	1	ENST00000301067.7:c.5503C>T	p.Arg1835Cys	p.R1835C	ENST00000301067	NM_003482.3	1835	Cgt/Tgt																																																																														
POLE	0	MSKCC	GRCh37	12	133249294	133249294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	300	643	0	ENST00000320574.5:c.1605C>A	p.Asp535Glu	p.D535E	ENST00000320574	NM_006231.2	535	gaC/gaA																																																																														
LATS2	0	MSKCC	GRCh37	13	21562258	21562258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	309	658	1	ENST00000382592.4:c.1661G>A	p.Gly554Asp	p.G554D	ENST00000382592	NM_014572.2	554	gGc/gAc																																																																														
CDK8	0	MSKCC	GRCh37	13	26975414	26975414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	200	382	0	ENST00000381527.3:c.1040C>T	p.Ala347Val	p.A347V	ENST00000381527	NM_001260.1	347	gCc/gTc																																																																														
FLT3	0	MSKCC	GRCh37	13	28608024	28608024	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	179	406	0	ENST00000241453.7:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000241453	NM_004119.2	648	Gaa/Taa																																																																														
MGA	0	MSKCC	GRCh37	15	42003386	42003386	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	208	414	0	ENST00000219905.7:c.2923C>T	p.Gln975Ter	p.Q975*	ENST00000219905	NM_001164273.1	975	Cag/Tag																																																																														
MGA	0	MSKCC	GRCh37	15	42032392	42032392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	196	403	0	ENST00000219905.7:c.4576C>T	p.Arg1526Trp	p.R1526W	ENST00000219905	NM_001164273.1	1526	Cgg/Tgg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829121	72829121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	178	420	0	ENST00000268489.5:c.7460C>T	p.Ala2487Val	p.A2487V	ENST00000268489	NM_006885.3	2487	gCg/gTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346255	89346255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	96	268	0	ENST00000301030.4:c.6695G>A	p.Arg2232His	p.R2232H	ENST00000301030	NM_001256183.1	2232	cGt/cAt																																																																														
STAT3	0	MSKCC	GRCh37	17	40474422	40474422	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	254	554	0	ENST00000264657.5:c.1979T>C	p.Met660Thr	p.M660T	ENST00000264657	NM_139276.2	660	aTg/aCg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11105601	11105601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	301	660	2	ENST00000344626.4:c.1517C>T	p.Thr506Met	p.T506M	ENST00000344626	NM_003072.3	506	aCg/aTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152056	11152056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	242	503	1	ENST00000344626.4:c.4244G>A	p.Arg1415Gln	p.R1415Q	ENST00000344626	NM_003072.3	1415	cGa/cAa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212576	36212576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	319	731	0	ENST00000222270.7:c.2327G>A	p.Arg776Gln	p.R776Q	ENST00000222270	NM_014727.1	776	cGg/cAg																																																																														
AKT2	0	MSKCC	GRCh37	19	40741911	40741911	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	254	613	0	ENST00000392038.2:c.1061A>G	p.Asp354Gly	p.D354G	ENST00000392038	NM_001626.4	354	gAc/gGc																																																																														
ACVR1	0	MSKCC	GRCh37	2	158634720	158634720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	149	316	0	ENST00000263640.3:c.466C>T	p.Arg156Cys	p.R156C	ENST00000263640	NM_001105.4	156	Cgc/Tgc																																																																														
EP300	0	MSKCC	GRCh37	22	41551033	41551033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	224	434	0	ENST00000263253.7:c.3177G>A	p.Met1059Ile	p.M1059I	ENST00000263253	NM_001429.3	1059	atG/atA																																																																														
MST1	0	MSKCC	GRCh37	3	49721510	49721510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	454	469	2	ENST00000449682.2:c.2129G>A	p.Arg710His	p.R710H	ENST00000449682	NM_020998.3	710	cGt/cAt																																																																														
GSK3B	0	MSKCC	GRCh37	3	119582440	119582440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	222	195	0	ENST00000316626.5:c.961C>T	p.Arg321Ter	p.R321*	ENST00000316626		321	Cga/Tga																																																																														
EPHB1	0	MSKCC	GRCh37	3	134880977	134880977	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	341	435	0	ENST00000398015.3:c.1540T>C	p.Tyr514His	p.Y514H	ENST00000398015	NM_004441.4	514	Tac/Cac																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186504426	186504427	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	232	500	0	ENST00000323963.5:c.770_771del	p.Glu257GlyfsTer9	p.E257Gfs*9	ENST00000323963		255	GAg/g																																																																														
ARID1B	0	MSKCC	GRCh37	6	157454196	157454196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	224	460	0	ENST00000346085.5:c.2406G>T	p.Met802Ile	p.M802I	ENST00000346085	NM_020732.3	802	atG/atT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341932	8341932	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	183	382	0	ENST00000356435.5:c.4708T>A	p.Leu1570Ile	p.L1570I	ENST00000356435		1570	Tta/Ata																																																																														
PTCH1	0	MSKCC	GRCh37	9	98242736	98242736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	191	425	1	ENST00000331920.6:c.881G>A	p.Arg294His	p.R294H	ENST00000331920	NM_000264.3	294	cGc/cAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396518	139396518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	239	609	0	ENST00000277541.6:c.5407G>A	p.Gly1803Ser	p.G1803S	ENST00000277541	NM_017617.3	1803	Ggt/Agt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400039	139400039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	220	560	1	ENST00000277541.6:c.4309G>A	p.Gly1437Arg	p.G1437R	ENST00000277541	NM_017617.3	1437	Ggg/Agg																																																																														
AMER1	0	MSKCC	GRCh37	X	63410637	63410637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	300	359	0	ENST00000330258.3:c.2530G>A	p.Gly844Ser	p.G844S	ENST00000330258	NM_152424.3	844	Ggc/Agc																																																																														
STAG2	0	MSKCC	GRCh37	X	123200102	123200102	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	268	255	0	ENST00000218089.9:c.2174T>A	p.Met725Lys	p.M725K	ENST00000218089	NM_001042749.1	725	aTg/aAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	93	388	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	123	479	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	118	471	0	ENST00000171111.5:c.994G>A	p.Gly332Ser	p.G332S	ENST00000171111	NM_203500.1	332	Ggc/Agc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735560	40735560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	93	349	0	ENST00000373198.4:c.3313G>T	p.Ala1105Ser	p.A1105S	ENST00000373198	NM_133170.3	1105	Gct/Tct																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11113836	11113836	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	74	441	0	ENST00000344626.4:c.1943+1G>A		p.X648_splice	ENST00000344626	NM_003072.3	648																																																																															
ERG	0	MSKCC	GRCh37	21	39755607	39755607	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	94	371	0	ENST00000288319.7:c.1158C>G	p.Tyr386Ter	p.Y386*	ENST00000288319	NM_182918.3	386	taC/taG																																																																														
BRCA2	0	MSKCC	GRCh37	13	32930636	32930637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTTTCCA			P-0026032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	76	413	0	ENST00000380152.3:c.7508_7515dup	p.Gln2506SerfsTer21	p.Q2506Sfs*21	ENST00000380152		2503	gtc/gTCTTTCCAtc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554505	63554505	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	79	485	0	ENST00000307078.5:c.234G>A	p.Trp78Ter	p.W78*	ENST00000307078	NM_004655.3	78	tgG/tgA																																																																														
CTLA4	0	MSKCC	GRCh37	2	204737453	204737453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	140	518	0	ENST00000302823.3:c.590C>G	p.Thr197Arg	p.T197R	ENST00000302823	NM_005214.4	197	aCa/aGa																																																																														
AR	0	MSKCC	GRCh37	X	66765090	66765090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	28	614	0	ENST00000374690.3:c.102C>G	p.Ile34Met	p.I34M	ENST00000374690	NM_000044.3	34	atC/atG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0026033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	196	497	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	165	468	2	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	360	387	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	591	632	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226859	2226879	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGTCCTCCGCAGGCGGC	GCGGCGTCCTCCGCAGGCGGC	-			P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	92	387	0	ENST00000398665.3:c.4353_4373del	p.Gly1452_Ala1458del	p.G1452_A1458del	ENST00000398665	NM_032482.2	1447	GCGGCGTCCTCCGCAGGCGGC/-																																																																														
BCOR	0	MSKCC	GRCh37	X	39932084	39932085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	224	549	1	ENST00000378444.4:c.2514dupC	p.Lys839GlnfsTer5	p.K839Qfs*5	ENST00000378444	NM_001123385.1	838	-/C																																																																														
FLT1	0	MSKCC	GRCh37	13	29004254	29004254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143093353		P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	201	296	0	ENST00000282397.4:c.1039G>A	p.Val347Ile	p.V347I	ENST00000282397	NM_002019.4	347	Gta/Ata																																																																														
RNF43	0	MSKCC	GRCh37	17	56440948	56440948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	388	452	1	ENST00000407977.2:c.389G>T	p.Gly130Val	p.G130V	ENST00000407977		130	gGt/gTt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123721	11123721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	205	504	1	ENST00000344626.4:c.2371G>A	p.Ala791Thr	p.A791T	ENST00000344626	NM_003072.3	791	Gcg/Acg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0026038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	495	446	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	272	334	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	0	MSKCC	GRCh37	5	112174359	112174359	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	173	203	0	ENST00000257430.4:c.3068delC	p.Thr1023AsnfsTer3	p.T1023Nfs*3	ENST00000257430	NM_000038.5	1023	aCa/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	603	831	0	ENST00000269305.4:c.440T>G	p.Val147Gly	p.V147G	ENST00000269305	NM_001126112.2	147	gTt/gGt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716326	52716326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	570	485	0	ENST00000322088.6:c.770G>T	p.Trp257Leu	p.W257L	ENST00000322088	NM_014225.5	257	tGg/tTg																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14626796	14626796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1683	230	524	0	ENST00000254322.2:c.979C>T	p.Pro327Ser	p.P327S	ENST00000254322	NM_006145.1	327	Ccc/Tcc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67593270	67593273	+	frameshift_variant	Frame_Shift_Del	DEL	AAAC	AAAC	-			P-0026039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	169	265	0	ENST00000274335.5:c.2019_2022del	p.Asn673LysfsTer18	p.N673Kfs*18	ENST00000274335		672	atAAAC/at																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589563	67589591	+	protein_altering_variant	In_Frame_Del	DEL	TGAAGCTGTAGGGAAAAAATTACATGAAT	TGAAGCTGTAGGGAAAAAATTACATGAAT	ATTCA			P-0026039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	34	252	0	ENST00000274335.5:c.1326_1354delinsATTCA	p.Glu443_Tyr452delinsPheAsn	p.E443_Y452delinsFN	ENST00000274335		442	atTGAAGCTGTAGGGAAAAAATTACATGAATat/atATTCAat																																																																														
IRS2	0	MSKCC	GRCh37	13	110434614	110434614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	305	757	1	ENST00000375856.3:c.3787G>A	p.Gly1263Arg	p.G1263R	ENST00000375856	NM_003749.2	1263	Ggg/Agg																																																																														
CDH1	0	MSKCC	GRCh37	16	68853257	68853321	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGGACAGGGAGGATTTTGAGCACGTGAAGAACAGCACGTACACAGCCCTAATCATAGCTACA	AGCTGGACAGGGAGGATTTTGAGCACGTGAAGAACAGCACGTACACAGCCCTAATCATAGCTACA	CGCTTCTTCAGTTATATGGTTACTTCC			P-0026055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	232	640	4	ENST00000261769.5:c.1640_1704delinsCGCTTCTTCAGTTATATGGTTACTTCC	p.Glu547AlafsTer28	p.E547Afs*28	ENST00000261769	NM_004360.3	547	gAGCTGGACAGGGAGGATTTTGAGCACGTGAAGAACAGCACGTACACAGCCCTAATCATAGCTACA/gCGCTTCTTCAGTTATATGGTTACTTCC																																																																														
RHOA	0	MSKCC	GRCh37	3	49412890	49412890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	448	718	0	ENST00000418115.1:c.133G>C	p.Asp45His	p.D45H	ENST00000418115	NM_001664.2	45	Gat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	977	737	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185190897	185190897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1357	80	757	1	ENST00000265026.3:c.1778G>T	p.Gly593Val	p.G593V	ENST00000265026	NM_004721.4	593	gGg/gTg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111518	56111518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	97	95	0	ENST00000399503.3:c.118G>T	p.Ala40Ser	p.A40S	ENST00000399503	NM_005921.1	40	Gcc/Tcc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0026059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	73	313	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0026059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	182	496	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	186	606	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
EIF4A2	0	MSKCC	GRCh37	3	186501406	186501406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	112	252	0	ENST00000323963.5:c.7G>A	p.Gly3Ser	p.G3S	ENST00000323963		3	Ggt/Agt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100301	27100301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	204	670	3	ENST00000324856.7:c.4013C>T	p.Ser1338Phe	p.S1338F	ENST00000324856	NM_006015.4	1338	tCc/tTc																																																																														
GATA3	0	MSKCC	GRCh37	10	8100430	8100430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	107	817	0	ENST00000346208.3:c.404C>A	p.Pro135Gln	p.P135Q	ENST00000346208		135	cCg/cAg																																																																														
RYBP	0	MSKCC	GRCh37	3	72427690	72427690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	126	373	0	ENST00000477973.2:c.798G>T	p.Arg267Leu	p.R267L	ENST00000477973	NM_012234.5	267	cGc/cTc																																																																														
LATS1	0	MSKCC	GRCh37	6	150005533	150005533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	194	375	0	ENST00000253339.5:c.692G>A	p.Gly231Glu	p.G231E	ENST00000253339		231	gGa/gAa																																																																														
RPTOR	0	MSKCC	GRCh37	17	78681762	78681762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	24	725	0	ENST00000306801.3:c.470G>T	p.Arg157Leu	p.R157L	ENST00000306801	NM_020761.2	157	cGg/cTg																																																																														
LATS1	0	MSKCC	GRCh37	6	150004358	150004358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	221	427	0	ENST00000253339.5:c.1867G>C	p.Asp623His	p.D623H	ENST00000253339		623	Gat/Cat																																																																														
LATS1	0	MSKCC	GRCh37	6	150004424	150004424	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	247	462	0	ENST00000253339.5:c.1801G>C	p.Asp601His	p.D601H	ENST00000253339		601	Gat/Cat																																																																														
LATS1	0	MSKCC	GRCh37	6	150004621	150004621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	282	532	0	ENST00000253339.5:c.1604G>T	p.Gly535Val	p.G535V	ENST00000253339		535	gGa/gTa																																																																														
LATS1	0	MSKCC	GRCh37	6	150005278	150005278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	265	426	0	ENST00000253339.5:c.947G>T	p.Gly316Val	p.G316V	ENST00000253339		316	gGa/gTa																																																																														
LATS1	0	MSKCC	GRCh37	6	150005678	150005678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	221	383	0	ENST00000253339.5:c.547G>C	p.Glu183Gln	p.E183Q	ENST00000253339		183	Gaa/Caa																																																																														
TERT	0	MSKCC	GRCh37	5	1294138	1294138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	791	1040	6	ENST00000310581.5:c.863C>T	p.Ala288Val	p.A288V	ENST00000310581	NM_198253.2	288	gCg/gTg																																																																														
MEN1	0	MSKCC	GRCh37	11	64575362	64575362	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	477	582	0	ENST00000337652.1:c.669+1G>T		p.X223_splice	ENST00000337652	NM_130803.2	223																																																																															
ATM	0	MSKCC	GRCh37	11	108119733	108119733	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	43	310	0	ENST00000278616.4:c.1139A>G	p.Tyr380Cys	p.Y380C	ENST00000278616	NM_000051.3	380	tAc/tGc																																																																														
GLI1	0	MSKCC	GRCh37	12	57861951	57861951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	433	539	0	ENST00000228682.2:c.1252C>T	p.Arg418Trp	p.R418W	ENST00000228682	NM_005269.2	418	Cgg/Tgg																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515400	103515400	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	38	317	1	ENST00000355739.4:c.1901T>C	p.Ile634Thr	p.I634T	ENST00000355739	NM_000123.3	634	aTt/aCt																																																																														
EP300	0	MSKCC	GRCh37	22	41572909	41572909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	553	603	1	ENST00000263253.7:c.5194C>T	p.Arg1732Cys	p.R1732C	ENST00000263253	NM_001429.3	1732	Cgc/Tgc																																																																														
E2F3	0	MSKCC	GRCh37	6	20488368	20488368	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	45	564	0	ENST00000346618.3:c.1024A>G	p.Thr342Ala	p.T342A	ENST00000346618	NM_001949.4	342	Acc/Gcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	188	599	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MEN1	0	MSKCC	GRCh37	11	64577197	64577197	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	224	746	0	ENST00000337652.1:c.385del	p.Leu129SerfsTer25	p.L129Sfs*25	ENST00000337652	NM_130803.2	129	Ctc/tc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178947833	178947833	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	46	368	0	ENST00000263967.3:c.2708G>C	p.Gly903Ala	p.G903A	ENST00000263967	NM_006218.2	903	gGa/gCa																																																																														
TEK	0	MSKCC	GRCh37	9	27172703	27172703	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	32	643	1	ENST00000380036.4:c.718T>A	p.Cys240Ser	p.C240S	ENST00000380036	NM_000459.3	240	Tgc/Agc																																																																														
JAK1	0	MSKCC	GRCh37	1	65303763	65303763	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	325	596	0	ENST00000342505.4:c.2992C>T	p.Gln998Ter	p.Q998*	ENST00000342505	NM_002227.2	998	Caa/Taa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024647	31024647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	370	651	0	ENST00000375687.4:c.4132C>T	p.Leu1378Phe	p.L1378F	ENST00000375687	NM_015338.5	1378	Ctt/Ttt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151949046	151949047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	1046	592	0	ENST00000262189.6:c.1598dup	p.Glu534GlyfsTer4	p.E534Gfs*4	ENST00000262189	NM_170606.2	533	gtg/gtTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	172	435	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	196	313	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0026076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	148	454	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0026076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	154	361	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0026076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	214	483	6	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	14	504	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	97	409	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	38	255	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	19	209	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643727	52643728	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	34	320	0	ENST00000394830.3:c.2168_2169del	p.Ser723TyrfsTer3	p.S723Yfs*3	ENST00000394830	NM_018313.4	723	tCT/t																																																																														
TET2	0	MSKCC	GRCh37	4	106197660	106197660	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	47	189	0	ENST00000380013.4:c.5993A>G	p.Tyr1998Cys	p.Y1998C	ENST00000380013	NM_001127208.2	1998	tAc/tGc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332826	153332826	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	61	240	0	ENST00000281708.4:c.130C>T	p.Gln44Ter	p.Q44*	ENST00000281708	NM_033632.3	44	Caa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112128170	112128170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	29	264	0	ENST00000257430.4:c.673G>A	p.Glu225Lys	p.E225K	ENST00000257430	NM_000038.5	225	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112175494	112175500	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCAGC	TGCCAGC	-			P-0026099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	16	159	0	ENST00000257430.4:c.4204_4210del	p.Ala1402ProfsTer11	p.A1402Pfs*11	ENST00000257430	NM_000038.5	1401	atTGCCAGC/at																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	126	379	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0026116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	11	202	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	44	260	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TSC2	0	MSKCC	GRCh37	16	2100465	2100465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	63	260	0	ENST00000219476.3:c.203C>T	p.Ala68Val	p.A68V	ENST00000219476	NM_000548.3	68	gCa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	93	275	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	211	360	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	34	127	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0026122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	97	194	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106515198	106515198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146675267		P-0026122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	114	234	0	ENST00000359195.3:c.2341G>A	p.Glu781Lys	p.E781K	ENST00000359195	NM_002649.2	781	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	124	274	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	150	375	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0026123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	31	81	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0026123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	31	81	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7577531	7577531	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0026125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	31	350	1	ENST00000269305.4:c.750delC	p.Ile251SerfsTer94	p.I251Sfs*94	ENST00000269305	NM_001126112.2	250	ccC/cc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5215410	5215410	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	22	253	0	ENST00000357368.4:c.4208G>C	p.Gly1403Ala	p.G1403A	ENST00000357368	NM_002850.3	1403	gGa/gCa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	233	477	0	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0026200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	37	351	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																														
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0026200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	210	389	3	ENST00000269305.4:c.374C>A	p.Thr125Lys	p.T125K	ENST00000269305	NM_001126112.2	125	aCg/aAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100151	27100151	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	181	353	1	ENST00000324856.7:c.3947C>A	p.Ser1316Ter	p.S1316*	ENST00000324856	NM_006015.4	1316	tCg/tAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89725050	89725051	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTA			P-0026200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	52	168	0	ENST00000371953.3:c.1034_1037dup	p.Phe347ValfsTer15	p.F347Vfs*15	ENST00000371953	NM_000314.4	345	ctg/cTGTAtg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828914	72828918	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCT	GCGCT	-			P-0026200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	177	426	0	ENST00000268489.5:c.7663_7667del	p.Ser2555AlafsTer22	p.S2555Afs*22	ENST00000268489	NM_006885.3	2555	AGCGCg/g																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11113708	11113708	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	281	409	0	ENST00000344626.4:c.1816C>G	p.Leu606Val	p.L606V	ENST00000344626	NM_003072.3	606	Ctg/Gtg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67590986	67590986	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	61	178	0	ENST00000274335.5:c.1580del	p.Asn527IlefsTer5	p.N527Ifs*5	ENST00000274335		527	Aat/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	184	544	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	220	494	1	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0026204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	125	487	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa																																																																														
INSR	0	MSKCC	GRCh37	19	7267878	7267878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	35	348	0	ENST00000302850.5:c.130C>G	p.Leu44Val	p.L44V	ENST00000302850	NM_000208.2	44	Ctc/Gtc																																																																														
AKT2	0	MSKCC	GRCh37	19	40739780	40739780	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0026204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1852	251	512	0	ENST00000392038.2:c.1445G>T	p.Ter482LeuextTer101	p.*482Lext*101	ENST00000392038	NM_001626.4	482	tGa/tTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000081-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	193	356	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178400	56178401	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0000081-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	67	232	0	ENST00000399503.3:c.3373_3374insGT	p.Asn1125SerfsTer24	p.N1125Sfs*24	ENST00000399503	NM_005921.1	1125	aat/aGTat																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56183240	56183241	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000081-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	291	411	1	ENST00000399503.3:c.4151dupT	p.Arg1385LysfsTer35	p.R1385Kfs*35	ENST00000399503	NM_005921.1	1384	cta/cTta																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0000081-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	218	584	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
MRE11A	0	MSKCC	GRCh37	11	94194194	94194194	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000081-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	74	336	0	ENST00000323929.3:c.1234A>T	p.Ile412Phe	p.I412F	ENST00000323929	NM_005591.3	412	Atc/Ttc																																																																														
IRS2	0	MSKCC	GRCh37	13	110436548	110436548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000081-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1401	193	806	3	ENST00000375856.3:c.1853C>T	p.Ala618Val	p.A618V	ENST00000375856	NM_003749.2	618	gCg/gTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812165	212812165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000541-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			326	202	617	0	ENST00000342788.4:c.411G>C	p.Lys137Asn	p.K137N	ENST00000342788	NM_005235.2	137	aaG/aaC																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486143	8486143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000541-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			356	225	675	0	ENST00000356435.5:c.2674G>A	p.Val892Ile	p.V892I	ENST00000356435		892	Gtc/Atc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41228535	41228535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000541-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			612	325	946	0	ENST00000357654.3:c.4454C>G	p.Thr1485Ser	p.T1485S	ENST00000357654	NM_007294.3	1485	aCc/aGc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061133	38061191	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTG	CGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTG	-			P-0000541-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			268	217	339	0	ENST00000250448.2:c.798_856del	p.Phe266LeufsTer7	p.F266Lfs*7	ENST00000250448	NM_004496.3	266	ttCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGgc/ttgc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692660	89692804	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTTTAAATACCTGTTAAGTTTGTATGCAACATTTCTAAAGTTACCTACTTGTTAATTAAAAATTCAAGAGTTTTTTTTTCTTATTCTGAGGTTATCTTTTTACCACAGTTGCACAATATCCTTTTGAAGACCATAACCCACCA	TCTTTTAAATACCTGTTAAGTTTGTATGCAACATTTCTAAAGTTACCTACTTGTTAATTAAAAATTCAAGAGTTTTTTTTTCTTATTCTGAGGTTATCTTTTTACCACAGTTGCACAATATCCTTTTGAAGACCATAACCCACCA	-			P-0000541-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			28	49	116	0	ENST00000371953.3:c.254-110_288del		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
SHOC2	0	MSKCC	GRCh37	10	112724286	112724286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000541-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			294	336	985	0	ENST00000369452.4:c.170C>G	p.Ser57Cys	p.S57C	ENST00000369452	NM_007373.3	57	tCc/tGc																																																																														
MEN1	0	MSKCC	GRCh37	11	64571767	64572614	+	splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant	Splice_Site	DEL	AGCCTGGGTCCCCACAAGCGGTCCGAAGTCCCCAGTAGTTCAGAGGCCTTTGCGCTGCCGCTTGAGGAAAGACAGAGTGTAGTCACTAGGGGTGGACACTTTCTGCTTCTTCATCTGCACTTGCGACTGTGCCGTGAGTTGCAGCTTGATGGCGCTCGAGTTGATCTTGGTGGCCACCAGCAGCTCCTTCATGCCCTTCATCTTCTCACTCTGGAAAGTGAGCACTGGACCCTCCGGCGGTGGTGATGCTGTGGGTGCTGGCACCTGAGCCGTGCTGCCACCTTCAGGGCCTCGGGCTGTGCCAGCGACAGTCCCAGGAGGCTTCCGGGGGGGTCCTGACACTGCACCCTGGCCGGTGCCCAGGCCCTTGTCCAGTGCTGGCTTCTTGGGCGGCGGGGGCTCCTCTGGCTTGGACTCCCGCCGTGGGCCCCGCCGCCGGCCTTCCCGGGCTTCCTCGCCCCACGGCTCCTCGGCCTCGGCCGCCTCGGCCTCTCGGCTCACTATGCGCACCTTCTGCCGCACCTGGGCCAGTGGGGAGAGCAAGGTGAGAGCAAGGTTGCCGGCCAGTGGCTGGAACTCCAGGACCCTGCTCTGGCCATCCCATCCCACCCAGGGGGTCTCAGTCCCATCGGCACCCAAGGGGATGGGCAGATGCTGCCCCTGGGCCAGAAAAGTCTGACAAGCCCGTGGCTGCTGTCACCACCTGTAGTGCCCAGACCTCTGTGCAGCTGTCCCTCACCTGTCCCTCAAAACGGCCTAGGGACTGCACAAGAAAGGTGGCCCAGCCCACATGCAGCACAGGCGTGGGACTGCCCTCCTCCCATTTGCAGATGCCGTCGTAGAATCGC	AGCCTGGGTCCCCACAAGCGGTCCGAAGTCCCCAGTAGTTCAGAGGCCTTTGCGCTGCCGCTTGAGGAAAGACAGAGTGTAGTCACTAGGGGTGGACACTTTCTGCTTCTTCATCTGCACTTGCGACTGTGCCGTGAGTTGCAGCTTGATGGCGCTCGAGTTGATCTTGGTGGCCACCAGCAGCTCCTTCATGCCCTTCATCTTCTCACTCTGGAAAGTGAGCACTGGACCCTCCGGCGGTGGTGATGCTGTGGGTGCTGGCACCTGAGCCGTGCTGCCACCTTCAGGGCCTCGGGCTGTGCCAGCGACAGTCCCAGGAGGCTTCCGGGGGGGTCCTGACACTGCACCCTGGCCGGTGCCCAGGCCCTTGTCCAGTGCTGGCTTCTTGGGCGGCGGGGGCTCCTCTGGCTTGGACTCCCGCCGTGGGCCCCGCCGCCGGCCTTCCCGGGCTTCCTCGCCCCACGGCTCCTCGGCCTCGGCCGCCTCGGCCTCTCGGCTCACTATGCGCACCTTCTGCCGCACCTGGGCCAGTGGGGAGAGCAAGGTGAGAGCAAGGTTGCCGGCCAGTGGCTGGAACTCCAGGACCCTGCTCTGGCCATCCCATCCCACCCAGGGGGTCTCAGTCCCATCGGCACCCAAGGGGATGGGCAGATGCTGCCCCTGGGCCAGAAAAGTCTGACAAGCCCGTGGCTGCTGTCACCACCTGTAGTGCCCAGACCTCTGTGCAGCTGTCCCTCACCTGTCCCTCAAAACGGCCTAGGGACTGCACAAGAAAGGTGGCCCAGCCCACATGCAGCACAGGCGTGGGACTGCCCTCCTCCCATTTGCAGATGCCGTCGTAGAATCGC	-			P-0000541-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			378	147	563	0	ENST00000337652.1:c.1257_*39del		p.X419_splice	ENST00000337652	NM_130803.2	419																																																																															
SLX4	0	MSKCC	GRCh37	16	3639975	3639975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000541-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			907	318	875	0	ENST00000294008.3:c.3664C>G	p.Leu1222Val	p.L1222V	ENST00000294008	NM_032444.2	1222	Ctg/Gtg																																																																														
MSH2	0	MSKCC	GRCh37	2	47630177	47630419	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	GACTCCCACCCACCGAAACGCAGCCCTGGAAGCTGATTGGGTGTGGTCGCCGTGGCCGGACGCCGCTCGGGGGACGTGGGAGGGGAGGCGGGAAACAGCTTAGTGGGTGTGGGGTCGCGCATTTTCTTCAACCAGGAGGTGAGGAGGTTTCGACATGGCGGTGCAGCCGAAGGAGACGCTGCAGTTGGAGAGCGCGGCCGAGGTCGGCTTCGTGCGCTTCTTTCAGGGCATGCCGGAGAAGCC	GACTCCCACCCACCGAAACGCAGCCCTGGAAGCTGATTGGGTGTGGTCGCCGTGGCCGGACGCCGCTCGGGGGACGTGGGAGGGGAGGCGGGAAACAGCTTAGTGGGTGTGGGGTCGCGCATTTTCTTCAACCAGGAGGTGAGGAGGTTTCGACATGGCGGTGCAGCCGAAGGAGACGCTGCAGTTGGAGAGCGCGGCCGAGGTCGGCTTCGTGCGCTTCTTTCAGGGCATGCCGGAGAAGCC	-			P-0000541-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			32	154	47	0	ENST00000233146.2:c.-151_92delTCCCACCCACCGAAACGCAGCCCTGGAAGCTGATTGGGTGTGGTCGCCGTGGCCGGACGCCGCTCGGGGGACGTGGGAGGGGAGGCGGGAAACAGCTTAGTGGGTGTGGGGTCGCGCATTTTCTTCAACCAGGAGGTGAGGAGGTTTCGACATGGCGGTGCAGCCGAAGGAGACGCTGCAGTTGGAGAGCGCGGCCGAGGTCGGCTTCGTGCGCTTCTTTCAGGGCATGCCGGAGAAGCCGAC		p.*51*	ENST00000233146	NM_000251.2	51																																																																															
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000713-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	99	190	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
BCL10	0	MSKCC	GRCh37	1	85736461	85736461	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000713-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			713	208	334	0	ENST00000370580.1:c.186A>T	p.Arg62Ser	p.R62S	ENST00000370580	NM_003921.4	62	agA/agT																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120466330	120466330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000713-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			744	117	366	0	ENST00000256646.2:c.4789T>G	p.Ser1597Ala	p.S1597A	ENST00000256646	NM_024408.3	1597	Tca/Gca																																																																														
IDH2	0	MSKCC	GRCh37	15	90631838	90631839	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0000713-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	92	412	0	ENST00000330062.3:c.514_515delinsGT	p.Arg172Val	p.R172V	ENST00000330062	NM_002168.2	172	AGg/GTg																																																																														
AURKA	0	MSKCC	GRCh37	20	54956605	54956605	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000713-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			851	139	412	0	ENST00000312783.6:c.589T>A	p.Tyr197Asn	p.Y197N	ENST00000312783	NM_198436.1	197	Tat/Aat																																																																														
ATRX	0	MSKCC	GRCh37	X	76937202	76937203	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0000713-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	108	459	0	ENST00000373344.5:c.3545_3546delinsGT	p.Lys1182Ser	p.K1182S	ENST00000373344	NM_000489.3	1182	aAG/aGT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	1207	742	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55223550	55223550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	1431	740	1	ENST00000275493.2:c.917C>T	p.Ser306Leu	p.S306L	ENST00000275493	NM_005228.3	306	tCg/tTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55259551	55259551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	1145	687	0	ENST00000275493.2:c.2609A>G	p.His870Arg	p.H870R	ENST00000275493	NM_005228.3	870	cAt/cGt																																																																														
MEN1	0	MSKCC	GRCh37	11	64572002	64572002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			964	194	1024	2	ENST00000337652.1:c.1652C>T	p.Pro551Leu	p.P551L	ENST00000337652	NM_130803.2	551	cCg/cTg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244452	46244452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			768	100	674	0	ENST00000334344.6:c.2546C>T	p.Ala849Val	p.A849V	ENST00000334344	NM_152641.2	849	gCa/gTa																																																																														
CRLF2	0	MSKCC	GRCh37	X	1314925	1314925	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0000894-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2189	1051	593	0				ENST00000381566																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			593	565	505	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			882	731	708	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			116	618	572	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591891	48591891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936394		P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			98	315	413	2	ENST00000342988.3:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000342988	NM_005359.5	352	Gga/Aga																																																																														
DNMT1	0	MSKCC	GRCh37	19	10260328	10260328	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148987580		P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			404	272	404	0	ENST00000340748.4:c.2339C>T	p.Thr780Met	p.T780M	ENST00000340748		780	aCg/aTg																																																																														
ATRX	0	MSKCC	GRCh37	X	76920227	76920227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			467	162	443	0	ENST00000373344.5:c.3850C>A	p.Leu1284Ile	p.L1284I	ENST00000373344	NM_000489.3	1284	Ctt/Att																																																																														
APC	0	MSKCC	GRCh37	5	112175765	112175774	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACGGAAA	GCCACGGAAA	-			P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			87	214	256	0	ENST00000257430.4:c.4475_4484del	p.Ala1492ValfsTer12	p.A1492Vfs*12	ENST00000257430	NM_000038.5	1492	GCCACGGAAAgt/gt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399521	139399521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1291	259	825	0	ENST00000277541.6:c.4622G>A	p.Ser1541Asn	p.S1541N	ENST00000277541	NM_017617.3	1541	aGc/aAc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458578	120458578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			292	171	432	1	ENST00000256646.2:c.6767G>T	p.Arg2256Leu	p.R2256L	ENST00000256646	NM_024408.3	2256	cGc/cTc																																																																														
FGF4	0	MSKCC	GRCh37	11	69589681	69589681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			100	56	153	0	ENST00000168712.1:c.172C>G	p.Leu58Val	p.L58V	ENST00000168712	NM_002007.2	58	Ctg/Gtg																																																																														
AKT1	0	MSKCC	GRCh37	14	105239423	105239424	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			940	164	581	0	ENST00000349310.3:c.963_964delinsTT	p.Glu322Ter	p.E322*	ENST00000349310	NM_001014432.1	321	ctGGag/ctTTag																																																																														
YES1	0	MSKCC	GRCh37	18	732881	732882	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			2469	174	626	1	ENST00000314574.4:c.1375_1376delinsTT	p.Gly459Leu	p.G459L	ENST00000314574	NM_005433.3	459	GGa/TTa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71247406	71247408	+	frameshift_variant	Frame_Shift_Del	DEL	CCG	CCG	AA			P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			637	93	511	2	ENST00000318789.4:c.125_127delinsTT	p.Pro42LeufsTer40	p.P42Lfs*40	ENST00000318789	NM_032682.5	42	cCGGcc/cTTcc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480496	89480496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			363	66	289	0	ENST00000336596.2:c.2333C>T	p.Ala778Val	p.A778V	ENST00000336596	NM_005233.5	778	gCt/gTt																																																																														
SOX17	0	MSKCC	GRCh37	8	55372282	55372282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001054-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	236	837	0	ENST00000297316.4:c.972G>C	p.Gln324His	p.Q324H	ENST00000297316	NM_022454.3	324	caG/caC																																																																														
ATM	0	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	687	610	2	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																														
TSC2	0	MSKCC	GRCh37	16	2134975	2134975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	541	976	2	ENST00000219476.3:c.4517A>G	p.His1506Arg	p.H1506R	ENST00000219476	NM_000548.3	1506	cAt/cGt																																																																														
AURKA	0	MSKCC	GRCh37	20	54945263	54945263	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	244	494	0	ENST00000312783.6:c.1163C>G	p.Ser388Ter	p.S388*	ENST00000312783	NM_198436.1	388	tCa/tGa																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	350	690	5	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
RNF43	0	MSKCC	GRCh37	17	56448301	56448301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			704	220	895	0	ENST00000407977.2:c.346C>T	p.Pro116Ser	p.P116S	ENST00000407977		116	Ccc/Tcc																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66518943	66518943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	136	676	0	ENST00000358598.2:c.224C>T	p.Thr75Ile	p.T75I	ENST00000358598	NM_212471.2	75	aCa/aTa																																																																														
TSC1	0	MSKCC	GRCh37	9	135781233	135781233	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001313-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	171	705	0	ENST00000298552.3:c.1732A>T	p.Thr578Ser	p.T578S	ENST00000298552	NM_001162426.1	578	Acc/Tcc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166014	118166014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	145	426	0	ENST00000369448.3:c.524G>A	p.Arg175His	p.R175H	ENST00000369448	NM_017709.3	175	cGt/cAt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			764	407	710	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495462	56495462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			883	172	650	0	ENST00000267101.3:c.3652G>A	p.Glu1218Lys	p.E1218K	ENST00000267101	NM_001982.3	1218	Gag/Aag																																																																														
FLT1	0	MSKCC	GRCh37	13	29001366	29001366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	260	397	0	ENST00000282397.4:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000282397	NM_002019.4	456	Gca/Aca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821437	72821437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			766	552	682	0	ENST00000268489.5:c.10738G>A	p.Asp3580Asn	p.D3580N	ENST00000268489	NM_006885.3	3580	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	492	686	1	ENST00000269305.4:c.581T>A	p.Leu194His	p.L194H	ENST00000269305	NM_001126112.2	194	cTt/cAt																																																																														
CASP8	0	MSKCC	GRCh37	2	202131408	202131408	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			769	154	578	0	ENST00000358485.4:c.376T>G	p.Phe126Val	p.F126V	ENST00000358485	NM_001080125.1	126	Ttc/Gtc																																																																														
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			722	251	425	3	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	251	367	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																														
SOX17	0	MSKCC	GRCh37	8	55371941	55371941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	123	531	1	ENST00000297316.4:c.631G>A	p.Ala211Thr	p.A211T	ENST00000297316	NM_022454.3	211	Gcg/Acg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499786	8499786	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs141698449		P-0001490-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			822	88	581	0	ENST00000356435.5:c.2183T>G	p.Val728Gly	p.V728G	ENST00000356435		728	gTt/gGt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001639-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	92	479	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001639-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	256	942	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	349	486	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	0	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	212	344	0	ENST00000257430.4:c.4463dup	p.Leu1488PhefsTer26	p.L1488Ffs*26	ENST00000257430	NM_000038.5	1487	act/acTt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457371	67457373	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0002095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			771	404	590	0	ENST00000327367.4:c.349_351del	p.Lys117del	p.K117del	ENST00000327367	NM_005902.3	115	atGAAg/atg																																																																														
UPF1	0	MSKCC	GRCh37	19	18976100	18976100	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			679	397	656	2	ENST00000262803.5:c.2860C>T	p.Arg954Trp	p.R954W	ENST00000262803	NM_002911.3	954	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112174475	112174476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	259	342	0	ENST00000257430.4:c.3187dup	p.Ser1063LysfsTer2	p.S1063Kfs*2	ENST00000257430	NM_000038.5	1062	caa/cAaa																																																																														
APC	0	MSKCC	GRCh37	5	112176212	112176226	+	inframe_deletion	In_Frame_Del	DEL	GTGTATTGTGTTGAA	GTGTATTGTGTTGAA	-			P-0002095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	283	399	0	ENST00000257430.4:c.4922_4936del	p.Val1641_Glu1645del	p.V1641_E1645del	ENST00000257430	NM_000038.5	1641	GTGTATTGTGTTGAA/-																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23539104	23539104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	294	523	0	ENST00000380871.4:c.335C>T	p.Ala112Val	p.A112V	ENST00000380871	NM_006167.3	112	gCc/gTc																																																																														
STAG2	0	MSKCC	GRCh37	X	123200221	123200221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002095-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	359	507	0	ENST00000218089.9:c.2200C>A	p.Leu734Met	p.L734M	ENST00000218089	NM_001042749.1	734	Ctg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002431-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			710	89	541	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FGF4	0	MSKCC	GRCh37	11	69589576	69589576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002431-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	94	309	2	ENST00000168712.1:c.277G>A	p.Gly93Ser	p.G93S	ENST00000168712	NM_002007.2	93	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			811	358	701	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PARP1	0	MSKCC	GRCh37	1	226567317	226567317	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			789	78	425	0	ENST00000366794.5:c.1569G>C	p.Met523Ile	p.M523I	ENST00000366794	NM_001618.3	523	atG/atC																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470950	25470950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			869	109	517	1	ENST00000264709.3:c.811G>A	p.Asp271Asn	p.D271N	ENST00000264709	NM_175629.2	271	Gac/Aac																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965690	25965690	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	88	582	0	ENST00000435504.4:c.3516G>C	p.Glu1172Asp	p.E1172D	ENST00000435504		1172	gaG/gaC																																																																														
MSH2	0	MSKCC	GRCh37	2	47702205	47702205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			857	63	471	0	ENST00000233146.2:c.1801C>G	p.Gln601Glu	p.Q601E	ENST00000233146	NM_000251.2	601	Cag/Gag																																																																														
MSH6	0	MSKCC	GRCh37	2	48033771	48033771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			648	62	282	0	ENST00000234420.5:c.3982C>A	p.Gln1328Lys	p.Q1328K	ENST00000234420	NM_000179.2	1328	Cag/Aag																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665015	138665015	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	24	133	0	ENST00000330315.3:c.550G>C	p.Asp184His	p.D184H	ENST00000330315	NM_023067.3	184	Gac/Cac																																																																														
RASA1	0	MSKCC	GRCh37	5	86645036	86645036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			476	54	276	0	ENST00000274376.6:c.1108C>G	p.Gln370Glu	p.Q370E	ENST00000274376	NM_002890.2	370	Caa/Gaa																																																																														
FLT4	0	MSKCC	GRCh37	5	180056399	180056399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			629	58	387	1	ENST00000261937.6:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000261937	NM_182925.4	282	cGa/cAa																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158417	26158417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1467	133	805	0	ENST00000289316.2:c.20C>G	p.Ser7Cys	p.S7C	ENST00000289316	NM_138720.2	7	tCt/tGt																																																																														
FGFR1	0	MSKCC	GRCh37	8	38277102	38277102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	106	485	0	ENST00000425967.3:c.1326G>C	p.Gln442His	p.Q442H	ENST00000425967	NM_001174067.1	442	caG/caC																																																																														
KLF4	0	MSKCC	GRCh37	9	110250386	110250386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			749	88	596	0	ENST00000374672.4:c.289G>A	p.Glu97Lys	p.E97K	ENST00000374672	NM_004235.4	97	Gag/Aag																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88672017	88672017	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			813	88	470	0	ENST00000372037.3:c.551C>G	p.Ser184Ter	p.S184*	ENST00000372037	NM_004329.2	184	tCa/tGa																																																																														
CIC	0	MSKCC	GRCh37	19	42795082	42795082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1549	106	681	0	ENST00000575354.2:c.2162C>G	p.Ser721Cys	p.S721C	ENST00000575354	NM_015125.3	721	tCc/tGc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223756	53223756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			976	133	785	0	ENST00000375401.3:c.3603G>C	p.Gln1201His	p.Q1201H	ENST00000375401	NM_004187.3	1201	caG/caC																																																																														
TBX3	0	MSKCC	GRCh37	12	115117311	115117311	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	139	366	0	ENST00000257566.3:c.863delA	p.Lys288ArgfsTer2	p.K288Rfs*2	ENST00000257566	NM_016569.3	288	aAg/ag																																																																														
CDH1	0	MSKCC	GRCh37	16	68855965	68856011	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCCCATACCAGAACCTCGAACTATATTCTTCTGTGAGAGGAATC	CGCCCCCATACCAGAACCTCGAACTATATTCTTCTGTGAGAGGAATC	-			P-0002995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			699	260	592	1	ENST00000261769.5:c.1774_1820del	p.Ala592LysfsTer9	p.A592Kfs*9	ENST00000261769	NM_004360.3	591	aaCGCCCCCATACCAGAACCTCGAACTATATTCTTCTGTGAGAGGAATCca/aaca																																																																														
TBX3	0	MSKCC	GRCh37	12	115112438	115112438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003150-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			774	382	946	0	ENST00000257566.3:c.1302C>G	p.Asp434Glu	p.D434E	ENST00000257566	NM_016569.3	434	gaC/gaG																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7984265	7984265	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003150-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			264	407	851	0	ENST00000319144.4:c.464G>T	p.Ser155Ile	p.S155I	ENST00000319144	NM_001139.2	155	aGc/aTc																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003195-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			844	239	513	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139410051	139410051	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61755997		P-0003195-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			634	631	691	5	ENST00000277541.6:c.1787C>T	p.Thr596Met	p.T596M	ENST00000277541	NM_017617.3	596	aCg/aTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11106910	11106910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003195-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			770	223	733	1	ENST00000344626.4:c.1615C>T	p.Arg539Cys	p.R539C	ENST00000344626	NM_003072.3	539	Cgc/Tgc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911686	32911686	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003195-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	624	554	0	ENST00000380152.3:c.3195del	p.Asn1066IlefsTer11	p.N1066Ifs*11	ENST00000380152		1065	aTt/at																																																																														
NCOR1	0	MSKCC	GRCh37	17	16097831	16097837	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTGTT	CTTTGTT	-			P-0003195-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	366	543	0	ENST00000268712.3:c.47_53del	p.Glu16ValfsTer33	p.E16Vfs*33	ENST00000268712	NM_006311.3	16	gAACAAAGt/gt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115221	8115874	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCAGGTAGAAGAGAGGCAACCGAAAGTTACTCAGTAGAACAGTACAGTCCTCATTTCTTCAAGGCAGACAGCCTTAACCACCTAGAGGCTGATGGCCTGGGGAGTACTTTTCAAGTTCTGAAGCAGATTTGTCAAAGTAGCCAAAATGGCATTTCCCTCCTGAAGATTCTTCACTACCTCGATTCTTATGAAATAGTCTAAGGAAGTTCTAAAGAAATAAGACAAGTGAATTCTATTTTCGTTACCAGAGAAATACAATCGTACTAGACGGGGCTGTAATCTGGTAACTGTATGTATTTTAGTTCTTCAGTCCCTGGGAAGGAGACAGGAGAAGGTGGGAGGGAGGAAGGGGCCAGCTGAAATGGAAACAGATCCCTGATCCGGGGCGGTCAGTGGAACCCTTCTTGGTGTGCGAGAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGATTAACAGACCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTC	GCCAGGTAGAAGAGAGGCAACCGAAAGTTACTCAGTAGAACAGTACAGTCCTCATTTCTTCAAGGCAGACAGCCTTAACCACCTAGAGGCTGATGGCCTGGGGAGTACTTTTCAAGTTCTGAAGCAGATTTGTCAAAGTAGCCAAAATGGCATTTCCCTCCTGAAGATTCTTCACTACCTCGATTCTTATGAAATAGTCTAAGGAAGTTCTAAAGAAATAAGACAAGTGAATTCTATTTTCGTTACCAGAGAAATACAATCGTACTAGACGGGGCTGTAATCTGGTAACTGTATGTATTTTAGTTCTTCAGTCCCTGGGAAGGAGACAGGAGAAGGTGGGAGGGAGGAAGGGGCCAGCTGAAATGGAAACAGATCCCTGATCCGGGGCGGTCAGTGGAACCCTTCTTGGTGTGCGAGAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGATTAACAGACCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTC	-			P-0003195-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			0	90	0	0	ENST00000346208.3:c.1048-478_1223del		p.X350_splice	ENST00000346208		350																																																																															
HIST1H2BD	0	MSKCC	GRCh37	6	26158611	26158611	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003195-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	127	368	0	ENST00000289316.2:c.214G>C	p.Glu72Gln	p.E72Q	ENST00000289316	NM_138720.2	72	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003215-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			643	28	895	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
BCOR	0	MSKCC	GRCh37	X	39922187	39922187	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003215-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	28	441	0	ENST00000378444.4:c.3985A>T	p.Lys1329Ter	p.K1329*	ENST00000378444	NM_001123385.1	1329	Aag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003223-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			469	352	639	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FANCC	0	MSKCC	GRCh37	9	97912359	97912359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003223-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			426	296	528	0	ENST00000289081.3:c.532G>A	p.Glu178Lys	p.E178K	ENST00000289081	NM_000136.2	178	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68857481	68857481	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003223-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			206	339	686	0	ENST00000261769.5:c.2116C>T	p.Gln706Ter	p.Q706*	ENST00000261769	NM_004360.3	706	Caa/Taa																																																																														
PMS2	0	MSKCC	GRCh37	7	6043412	6043412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003223-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			61	18	64	0	ENST00000265849.7:c.262C>T	p.His88Tyr	p.H88Y	ENST00000265849	NM_000535.5	88	Cac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003357-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	29	809	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
SOX17	0	MSKCC	GRCh37	8	55371785	55371785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003357-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	23	205	0	ENST00000297316.4:c.475C>A	p.Leu159Met	p.L159M	ENST00000297316	NM_022454.3	159	Ctg/Atg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003573-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			793	160	766	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0003573-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			656	368	919	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003573-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			379	105	444	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
ESR1	0	MSKCC	GRCh37	6	152201856	152201856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003573-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			336	153	681	0	ENST00000206249.3:c.710G>A	p.Cys237Tyr	p.C237Y	ENST00000206249	NM_000125.3	237	tGc/tAc																																																																														
RB1	0	MSKCC	GRCh37	13	49030398	49030398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003573-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			671	79	776	0	ENST00000267163.4:c.1873A>G	p.Thr625Ala	p.T625A	ENST00000267163	NM_000321.2	625	Act/Gct																																																																														
GNA11	0	MSKCC	GRCh37	19	3113463	3113463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003573-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			552	150	768	0	ENST00000078429.4:c.457C>G	p.Leu153Val	p.L153V	ENST00000078429	NM_002067.2	153	Ctc/Gtc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41226354	41226354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003573-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			755	169	828	0	ENST00000357654.3:c.4669G>C	p.Asp1557His	p.D1557H	ENST00000357654	NM_007294.3	1557	Gat/Cat																																																																														
LATS1	0	MSKCC	GRCh37	6	150004211	150004212	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TACCCGCATCATTTCATTCTCTAATTGTTTTTTACGATGTAGACGCTGCTGATGAGATTTGAG			P-0003573-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			509	27	530	0	ENST00000253339.5:c.1951_2010+3dup		p.X651_splice	ENST00000253339		651																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0003580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	473	748	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			124	147	496	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																														
NRAS	0	MSKCC	GRCh37	1	115256532	115256532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	269	774	1	ENST00000369535.4:c.179G>A	p.Gly60Glu	p.G60E	ENST00000369535	NM_002524.4	60	gGa/gAa																																																																														
STAT3	0	MSKCC	GRCh37	17	40467798	40467798	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	132	509	0	ENST00000264657.5:c.2278G>T	p.Glu760Ter	p.E760*	ENST00000264657	NM_139276.2	760	Gag/Tag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			106	278	397	0	ENST00000342988.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000342988	NM_005359.5	493	gAt/gGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577557	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGG			P-0003580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	399	600	0	ENST00000269305.4:c.722_724dupCCT	p.Ser241dup	p.S241dup	ENST00000269305	NM_001126112.2	241	tgc/tCCTgc																																																																														
MCL1	0	MSKCC	GRCh37	1	150551935	150551946	+	inframe_deletion	In_Frame_Del	DEL	GCCGGCCCCCAA	GCCGGCCCCCAA	-			P-0003580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			575	52	500	0	ENST00000369026.2:c.61_72del	p.Leu21_Gly24del	p.L21_G24del	ENST00000369026	NM_021960.4	21	TTGGGGGCCGGC/-																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169151	32169151	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003580-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	182	665	1	ENST00000375023.3:c.3882del	p.Ser1296ProfsTer8	p.S1296Pfs*8	ENST00000375023	NM_004557.3	1294	ggG/gg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003684-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	180	774	18	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004023-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			175	208	449	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
DAXX	0	MSKCC	GRCh37	6	33288749	33288749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	325	335	0	ENST00000374542.5:c.803A>G	p.Asn268Ser	p.N268S	ENST00000374542	NM_001141970.1	268	aAc/aGc																																																																														
ATRX	0	MSKCC	GRCh37	X	76778800	76778800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			121	318	333	0	ENST00000373344.5:c.6779A>G	p.His2260Arg	p.H2260R	ENST00000373344	NM_000489.3	2260	cAc/cGc																																																																														
MEN1	0	MSKCC	GRCh37	11	64573786	64573786	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			149	499	551	0	ENST00000337652.1:c.982delT	p.Tyr328ThrfsTer45	p.Y328Tfs*45	ENST00000337652	NM_130803.2	328	Tac/ac																																																																														
TSC2	0	MSKCC	GRCh37	16	2108877	2108877	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0004185-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	464	499	0	ENST00000219476.3:c.975+3A>C		p.X325_splice	ENST00000219476	NM_000548.3	325																																																																															
LATS1	0	MSKCC	GRCh37	6	150005020	150005020	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			330	90	308	0	ENST00000253339.5:c.1205delA	p.Asn402MetfsTer8	p.N402Mfs*8	ENST00000253339		402	aAt/at																																																																														
ATM	0	MSKCC	GRCh37	11	108203629	108203629	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0004308-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	139	172	1	ENST00000278616.4:c.7927+2T>A		p.X2643_splice	ENST00000278616	NM_000051.3	2643																																																																															
GATA3	0	MSKCC	GRCh37	10	8115900	8115901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			839	467	377	0	ENST00000346208.3:c.1247dup	p.Thr417AspfsTer90	p.T417Dfs*90	ENST00000346208		416	ctg/cTtg																																																																														
TSHR	0	MSKCC	GRCh37	14	81609812	81609812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			863	63	249	0	ENST00000298171.2:c.1410C>G	p.Ile470Met	p.I470M	ENST00000298171	NM_000369.2	470	atC/atG																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2494334	2494334	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0005038-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			847	163	1089	0	ENST00000355716.4:c.725A>G	p.Gln242Arg	p.Q242R	ENST00000355716	NM_003820.2	242	cAg/cGg																																																																														
JAK1	0	MSKCC	GRCh37	1	65310503	65310503	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005038-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	235	779	0	ENST00000342505.4:c.2185A>T	p.Ser729Cys	p.S729C	ENST00000342505	NM_002227.2	729	Agt/Tgt																																																																														
MEN1	0	MSKCC	GRCh37	11	64575153	64575153	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005038-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	165	517	0	ENST00000337652.1:c.670-1G>A		p.X224_splice	ENST00000337652	NM_130803.2	224																																																																															
ALK	0	MSKCC	GRCh37	2	29474026	29474026	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147858673		P-0005038-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			754	383	1037	2	ENST00000389048.3:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000389048	NM_004304.4	717	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			874	87	878	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577497	7577497	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0005349-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	81	509	0	ENST00000269305.4:c.782+2T>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
CDK12	0	MSKCC	GRCh37	17	37627772	37627772	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005445-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			738	531	695	0	ENST00000447079.4:c.1687C>T	p.Gln563Ter	p.Q563*	ENST00000447079	NM_015083.1	563	Caa/Taa																																																																														
CDK12	0	MSKCC	GRCh37	17	37618549	37618550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005445-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			654	460	555	0	ENST00000447079.4:c.226dupA	p.Ile76AsnfsTer4	p.I76Nfs*4	ENST00000447079	NM_015083.1	75	-/A																																																																														
MLL3	0	MSKCC	GRCh37	7	151876964	151876980	+	frameshift_variant	Frame_Shift_Del	DEL	TAGGGTCCACGCTGATC	TAGGGTCCACGCTGATC	-			P-0005445-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			965	246	418	0	ENST00000262189.6:c.7381_7397delGATCAGCGTGGACCCTA	p.Asp2461SerfsTer3	p.D2461Sfs*3	ENST00000262189	NM_170606.2	2461	GATCAGCGTGGACCCTAt/t																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			527	232	699	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			909	313	1333	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CASP8	0	MSKCC	GRCh37	2	202149917	202149917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			957	1442	1168	3	ENST00000358485.4:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000358485	NM_001080125.1	453	cCg/cTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187518842	187518842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	161	945	1	ENST00000441802.2:c.12362G>A	p.Gly4121Glu	p.G4121E	ENST00000441802	NM_005245.3	4121	gGa/gAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518091	8518091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			846	84	813	0	ENST00000356435.5:c.1300A>G	p.Ile434Val	p.I434V	ENST00000356435		434	Att/Gtt																																																																														
TP53	0	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			893	193	1168	0	ENST00000269305.4:c.587G>T	p.Arg196Leu	p.R196L	ENST00000269305	NM_001126112.2	196	cGa/cTa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243598	41243598	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			839	297	1280	0	ENST00000357654.3:c.3950del	p.Leu1317Ter	p.L1317*	ENST00000357654	NM_007294.3	1317	tTg/tg																																																																														
CDC73	0	MSKCC	GRCh37	1	193218908	193218908	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	294	755	0	ENST00000367435.3:c.1467del	p.Gln490ArgfsTer5	p.Q490Rfs*5	ENST00000367435	NM_024529.4	489	gTt/gt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1424	401	1335	3	ENST00000397062.3:c.229G>T	p.Asp77Tyr	p.D77Y	ENST00000397062	NM_006164.4	77	Gat/Tat																																																																														
PRKCI	0	MSKCC	GRCh37	3	170002371	170002371	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	236	636	0	ENST00000295797.4:c.1190A>C	p.Tyr397Ser	p.Y397S	ENST00000295797	NM_002740.5	397	tAc/tCc																																																																														
TAP2	0	MSKCC	GRCh37	6	32790078	32790078	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	121	613	0	ENST00000374899.4:c.1950C>G	p.Phe650Leu	p.F650L	ENST00000374899	NM_018833.2	650	ttC/ttG																																																																														
KMT2C	0	MSKCC	GRCh37	7	151876995	151876995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	266	878	0	ENST00000262189.6:c.7366G>T	p.Ala2456Ser	p.A2456S	ENST00000262189	NM_170606.2	2456	Gct/Tct																																																																														
KDM5C	0	MSKCC	GRCh37	X	53246324	53246324	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006008-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	265	532	0	ENST00000375401.3:c.657+1G>A		p.X219_splice	ENST00000375401	NM_004187.3	219																																																																															
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	280	463	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																														
GATA3	0	MSKCC	GRCh37	10	8111524	8111525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			973	152	601	0	ENST00000346208.3:c.1011dup	p.Cys338LeufsTer14	p.C338Lfs*14	ENST00000346208		337	gtc/gtCc																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46597593	46597593	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	137	476	0	ENST00000262741.5:c.32A>G	p.Asp11Gly	p.D11G	ENST00000262741	NM_003629.3	11	gAt/gGt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508190	106508190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	89	173	0	ENST00000359195.3:c.184G>A	p.Ala62Thr	p.A62T	ENST00000359195	NM_002649.2	62	Gcc/Acc																																																																														
ERF	0	MSKCC	GRCh37	19	42752752	42752752	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	184	761	0	ENST00000222329.4:c.1512T>G	p.Phe504Leu	p.F504L	ENST00000222329	NM_006494.2	504	ttT/ttG																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38137094	38137094	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1351115556		P-0006169-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1274	172	664	0	ENST00000317025.8:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000317025	NM_023034.1	1242	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006376-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			327	379	674	1	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0006376-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			654	500	650	0	ENST00000269571.5:c.2332_2340dupGGCTCCCCA	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																														
NF1	0	MSKCC	GRCh37	17	29562734	29562734	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006376-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			682	250	505	0	ENST00000358273.4:c.3814C>T	p.Gln1272Ter	p.Q1272*	ENST00000358273	NM_001042492.2	1272	Cag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29508508	29508509	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0006376-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			596	366	515	0	ENST00000358273.4:c.654+2dupT		p.X218_splice	ENST00000358273	NM_001042492.2	218																																																																															
BMPR1A	0	MSKCC	GRCh37	10	88677065	88677065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006376-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			598	367	554	2	ENST00000372037.3:c.850C>T	p.Arg284Cys	p.R284C	ENST00000372037	NM_004329.2	284	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006417-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			812	95	657	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006417-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			879	47	666	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
ETV6	0	MSKCC	GRCh37	12	12022423	12022423	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006417-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1361	102	958	0	ENST00000396373.4:c.529G>T	p.Glu177Ter	p.E177*	ENST00000396373	NM_001987.4	177	Gaa/Taa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446137	49446137	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006417-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1205	65	976	0	ENST00000301067.7:c.1329del	p.Pro444LeufsTer486	p.P444Lfs*486	ENST00000301067	NM_003482.3	443	ccA/cc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111855990	111855990	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201886863		P-0006417-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			860	78	674	1	ENST00000341259.2:c.41C>T	p.Ala14Val	p.A14V	ENST00000341259	NM_005475.2	14	gCg/gTg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41246233	41246233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006417-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			808	50	570	1	ENST00000357654.3:c.1315G>A	p.Ala439Thr	p.A439T	ENST00000357654	NM_007294.3	439	Gct/Act																																																																														
RNF43	0	MSKCC	GRCh37	17	56448270	56448270	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0006417-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			701	85	568	0	ENST00000407977.2:c.375+2T>C		p.X125_splice	ENST00000407977		125																																																																															
RUNX1	0	MSKCC	GRCh37	21	36206693	36206710	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATCTGGTACTTACCCTG	CATCTGGTACTTACCCTG	-			P-0006417-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			904	89	741	0	ENST00000300305.3:c.802_805+14del		p.X268_splice	ENST00000300305		268																																																																															
TAP2	0	MSKCC	GRCh37	6	32797232	32797232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006417-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	85	872	2	ENST00000374899.4:c.1877G>A	p.Arg626Gln	p.R626Q	ENST00000374899	NM_018833.2	626	cGg/cAg																																																																														
JAK2	0	MSKCC	GRCh37	9	5090570	5090570	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0006417-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	73	484	0	ENST00000381652.3:c.2886G>C	p.Lys962Asn	p.K962N	ENST00000381652	NM_004972.3	962	aaG/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	34	1067	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0006654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	24	741	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0006654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	35	408	0	ENST00000371953.3:c.1027-1G>C		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	367	505	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578504	7578540	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTG	AGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTG	-			P-0006691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	526	949	0	ENST00000269305.4:c.390_426del	p.Asn131CysfsTer27	p.N131Cfs*27	ENST00000269305	NM_001126112.2	130	ctCAACAAGATGTTTTGCCAACTGGCCAAGACCTGCCCT/ct																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573622	48573622	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	25	383	0	ENST00000342988.3:c.206del	p.Ser69IlefsTer25	p.S69Ifs*25	ENST00000342988	NM_005359.5	69	aGt/at																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584822	48584822	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006691-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	93	339	0	ENST00000342988.3:c.901del	p.Tyr301ThrfsTer35	p.Y301Tfs*35	ENST00000342988	NM_005359.5	300	caT/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	441	939	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509049	106509049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			727	196	694	0	ENST00000359195.3:c.1043G>T	p.Ser348Ile	p.S348I	ENST00000359195	NM_002649.2	348	aGt/aTt																																																																														
TP53	0	MSKCC	GRCh37	17	7573996	7573996	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006760-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	344	1137	1	ENST00000269305.4:c.1031T>A	p.Leu344Gln	p.L344Q	ENST00000269305	NM_001126112.2	344	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006803-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1312	81	1723	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732285	74732285	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006803-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			286	156	442	0	ENST00000359995.5:c.624T>G	p.Ser208Arg	p.S208R	ENST00000359995	NM_001195427.1	208	agT/agG																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211069	36211069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006803-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			828	510	1911	0	ENST00000222270.7:c.820C>G	p.Pro274Ala	p.P274A	ENST00000222270	NM_014727.1	274	Cca/Gca																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133173	38133173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006803-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			815	408	1325	0	ENST00000317025.8:c.4300G>A	p.Glu1434Lys	p.E1434K	ENST00000317025	NM_023034.1	1434	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	497	425	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
B2M	0	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	144	314	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	175	730	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133883	55133883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	112	345	0	ENST00000257290.5:c.1096G>C	p.Asp366His	p.D366H	ENST00000257290	NM_006206.4	366	Gat/Cat																																																																														
ASXL2	0	MSKCC	GRCh37	2	25972633	25972633	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			171	181	355	0	ENST00000435504.4:c.1792C>T	p.Gln598Ter	p.Q598*	ENST00000435504		598	Cag/Tag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52663002	52663002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			196	104	371	0	ENST00000394830.3:c.1351G>A	p.Asp451Asn	p.D451N	ENST00000394830	NM_018313.4	451	Gat/Aat																																																																														
HGF	0	MSKCC	GRCh37	7	81399233	81399233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			629	312	625	0	ENST00000222390.5:c.55C>T	p.Leu19Phe	p.L19F	ENST00000222390	NM_000601.4	19	Ctc/Ttc																																																																														
POLE	0	MSKCC	GRCh37	12	133220464	133220464	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	148	566	0	ENST00000320574.5:c.4249G>T	p.Glu1417Ter	p.E1417*	ENST00000320574	NM_006231.2	1417	Gag/Tag																																																																														
POLE	0	MSKCC	GRCh37	12	133252685	133252685	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149029910		P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	98	539	1	ENST00000320574.5:c.1015G>A	p.Asp339Asn	p.D339N	ENST00000320574	NM_006231.2	339	Gat/Aat																																																																														
CDK12	0	MSKCC	GRCh37	17	37619027	37619027	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	282	573	0	ENST00000447079.4:c.703G>C	p.Asp235His	p.D235H	ENST00000447079	NM_015083.1	235	Gat/Cat																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022766	31022766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			199	612	501	0	ENST00000375687.4:c.2251G>T	p.Val751Phe	p.V751F	ENST00000375687	NM_015338.5	751	Gtt/Ttt																																																																														
FLT1	0	MSKCC	GRCh37	13	28903809	28903809	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	120	586	1	ENST00000282397.4:c.2650del	p.His884ThrfsTer6	p.H884Tfs*6	ENST00000282397	NM_002019.4	884	Cac/ac																																																																														
B2M	0	MSKCC	GRCh37	15	45007770	45007787	+	inframe_deletion	In_Frame_Del	DEL	GACTTGTCTTTCAGCAAG	GACTTGTCTTTCAGCAAG	-			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	193	314	0	ENST00000558401.1:c.221_238del	p.Leu74_Asp79del	p.L74_D79del	ENST00000558401	NM_004048.2	73	GACTTGTCTTTCAGCAAG/-																																																																														
SLX4	0	MSKCC	GRCh37	16	3646388	3646388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			420	177	632	1	ENST00000294008.3:c.1690A>G	p.Met564Val	p.M564V	ENST00000294008	NM_032444.2	564	Atg/Gtg																																																																														
MLL3	0	MSKCC	GRCh37	7	151874283	151874283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	207	309	2	ENST00000262189.6:c.8255G>T	p.Gly2752Val	p.G2752V	ENST00000262189	NM_170606.2	2752	gGa/gTa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38148103	38148105	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0007083-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	91	735	0	ENST00000317025.8:c.3006_3008del	p.Phe1003del	p.F1003del	ENST00000317025	NM_023034.1	1002	ttCTTt/ttt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			79	294	854	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0007659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	550	849	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223695	36223695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2215	165	884	0	ENST00000222270.7:c.6245G>T	p.Gly2082Val	p.G2082V	ENST00000222270	NM_014727.1	2082	gGc/gTc																																																																														
PMS2	0	MSKCC	GRCh37	7	6048647	6048647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			849	251	674	0	ENST00000265849.7:c.4G>C	p.Glu2Gln	p.E2Q	ENST00000265849	NM_000535.5	2	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0007895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	488	1365	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514758	103514758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143667470		P-0007895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	27	336	1	ENST00000355739.4:c.1259G>A	p.Arg420His	p.R420H	ENST00000355739	NM_000123.3	420	cGt/cAt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201692	66201692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	34	669	0	ENST00000273854.3:c.2810G>A	p.Arg937His	p.R937H	ENST00000273854	NM_004439.5	937	cGt/cAt																																																																														
PREX2	0	MSKCC	GRCh37	8	69058474	69058474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			323	26	340	1	ENST00000288368.4:c.4118G>T	p.Ser1373Ile	p.S1373I	ENST00000288368	NM_024870.2	1373	aGt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007898-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			773	143	522	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007898-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	170	551	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
AKT3	0	MSKCC	GRCh37	1	243668559	243668559	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007898-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			575	111	438	0	ENST00000263826.5:c.1432C>T	p.Arg478Ter	p.R478*	ENST00000263826	NM_005465.4	478	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48586246	48586247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007898-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	177	517	0	ENST00000342988.3:c.917dup	p.Asn306LysfsTer2	p.N306Kfs*2	ENST00000342988	NM_005359.5	305	-/A																																																																														
KMT2C	0	MSKCC	GRCh37	7	151880169	151880169	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007898-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	326	509	1	ENST00000262189.6:c.5155C>T	p.Gln1719Ter	p.Q1719*	ENST00000262189	NM_170606.2	1719	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431257	49431267	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCTGGGCAG	GGCCTGGGCAG	-			P-0007898-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	122	390	0	ENST00000301067.7:c.9872_9882delCTGCCCAGGCC	p.Pro3291HisfsTer6	p.P3291Hfs*6	ENST00000301067	NM_003482.3	3291	cCTGCCCAGGCC/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008238-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			629	159	880	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0008238-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			963	248	1096	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KDR	0	MSKCC	GRCh37	4	55979623	55979623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008238-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			744	67	771	0	ENST00000263923.4:c.824G>A	p.Arg275Gln	p.R275Q	ENST00000263923	NM_002253.2	275	cGa/cAa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0008599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	19	606	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			781	109	1156	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149501595	149501595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008599-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	91	593	1	ENST00000261799.4:c.2192C>A	p.Ser731Tyr	p.S731Y	ENST00000261799	NM_002609.3	731	tCc/tAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008645-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	57	896	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0008645-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			706	40	727	1	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
KMT2C	0	MSKCC	GRCh37	7	151879531	151879531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008645-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			565	36	466	1	ENST00000262189.6:c.5414G>A	p.Gly1805Glu	p.G1805E	ENST00000262189	NM_170606.2	1805	gGg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008818-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			697	118	832	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0008818-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			960	227	1316	3	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008818-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	94	670	0	ENST00000304494.5:c.251A>T	p.Asp84Val	p.D84V	ENST00000304494	NM_000077.4	84	gAc/gTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008818-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	94	670	0	ENST00000304494.5:c.251A>T	p.Asp84Val	p.D84V	ENST00000304494	NM_000077.4	84	gAc/gTc																																																																														
SETD2	0	MSKCC	GRCh37	3	47162308	47162308	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008818-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	46	540	0	ENST00000409792.3:c.3818A>G	p.Gln1273Arg	p.Q1273R	ENST00000409792	NM_014159.6	1273	cAa/cGa																																																																														
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008839-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	372	509	2	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
TP63	0	MSKCC	GRCh37	3	189604314	189604314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008839-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			597	88	357	0	ENST00000264731.3:c.1481C>A	p.Thr494Asn	p.T494N	ENST00000264731	NM_003722.4	494	aCc/aAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8331681	8331681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008839-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	72	316	0	ENST00000356435.5:c.5435G>T	p.Gly1812Val	p.G1812V	ENST00000356435		1812	gGa/gTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0008849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			685	452	589	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
EGFR	0	MSKCC	GRCh37	7	55242494	55242494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			629	447	515	0	ENST00000275493.2:c.2264C>G	p.Ala755Gly	p.A755G	ENST00000275493	NM_005228.3	755	gCc/gGc																																																																														
MDM4	0	MSKCC	GRCh37	1	204513718	204513718	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	21	205	0	ENST00000367182.3:c.728A>T	p.Glu243Val	p.E243V	ENST00000367182	NM_001278516.1	243	gAg/gTg																																																																														
MED12	0	MSKCC	GRCh37	X	70348996	70348996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			498	241	634	0	ENST00000374080.3:c.3508C>G	p.Arg1170Gly	p.R1170G	ENST00000374080		1170	Cgg/Ggg																																																																														
TP53	0	MSKCC	GRCh37	17	7577132	7577132	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	268	667	0	ENST00000269305.4:c.806del	p.Ser269ThrfsTer76	p.S269Tfs*76	ENST00000269305	NM_001126112.2	269	aGc/ac																																																																														
BAP1	0	MSKCC	GRCh37	3	52437596	52437597	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0008849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	82	434	0	ENST00000460680.1:c.1564_1565del	p.Pro522CysfsTer14	p.P522Cfs*14	ENST00000460680	NM_004656.3	522	CCt/t																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15299806	15299806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	23	478	0	ENST00000263388.2:c.1372A>G	p.Met458Val	p.M458V	ENST00000263388	NM_000435.2	458	Atg/Gtg																																																																														
CARD11	0	MSKCC	GRCh37	7	2958127	2958127	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008849-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	82	479	0	ENST00000396946.4:c.2605C>T	p.Arg869Trp	p.R869W	ENST00000396946	NM_032415.4	869	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009056-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	657	726	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
SLX4	0	MSKCC	GRCh37	16	3640608	3640608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009056-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2149	226	964	1	ENST00000294008.3:c.3031G>T	p.Val1011Phe	p.V1011F	ENST00000294008	NM_032444.2	1011	Gtc/Ttc																																																																														
FAM175A	0	MSKCC	GRCh37	4	84391488	84391488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009056-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	180	390	0	ENST00000321945.7:c.344G>A	p.Arg115Lys	p.R115K	ENST00000321945	NM_139076.2	115	aGg/aAg																																																																														
APC	0	MSKCC	GRCh37	5	112175903	112176111	+	frameshift_variant	Frame_Shift_Del	DEL	GAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAG	GAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAG	-			P-0009056-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			119	256	379	0	ENST00000257430.4:c.4615_4823delTCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGGAA	p.Ser1539ThrfsTer23	p.S1539Tfs*23	ENST00000257430	NM_000038.5	1538	GAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGg/g																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553534	106553534	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009056-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	62	325	0	ENST00000369096.4:c.1499G>T	p.Gly500Val	p.G500V	ENST00000369096	NM_001198.3	500	gGg/gTg																																																																														
AGO2	0	MSKCC	GRCh37	8	141554386	141554386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009056-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1864	193	863	1	ENST00000220592.5:c.1765C>A	p.Gln589Lys	p.Q589K	ENST00000220592	NM_012154.3	589	Cag/Aag																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273884	18273884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201531496		P-0009247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			621	99	507	1	ENST00000222254.8:c.1217G>A	p.Arg406His	p.R406H	ENST00000222254	NM_005027.3	406	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	479	478	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
MTOR	0	MSKCC	GRCh37	1	11291409	11291409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			796	130	474	0	ENST00000361445.4:c.2597A>G	p.Glu866Gly	p.E866G	ENST00000361445	NM_004958.3	866	gAg/gGg																																																																														
SPEN	0	MSKCC	GRCh37	1	16256315	16256316	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0009247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			711	139	541	1	ENST00000375759.3:c.3580_3581delinsTT	p.Ser1194Phe	p.S1194F	ENST00000375759	NM_015001.2	1194	AGt/TTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89720761	89720761	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			72	19	158	0	ENST00000371953.3:c.912C>A	p.Cys304Ter	p.C304*	ENST00000371953	NM_000314.4	304	tgC/tgA																																																																														
CREBBP	0	MSKCC	GRCh37	16	3824654	3824655	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0009247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			823	80	358	1	ENST00000262367.5:c.2198_2199delinsTT	p.Gln733Leu	p.Q733L	ENST00000262367	NM_004380.2	733	cAG/cTT																																																																														
CDH1	0	MSKCC	GRCh37	16	68862125	68862125	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			825	179	443	1	ENST00000261769.5:c.2213A>T	p.Lys738Ile	p.K738I	ENST00000261769	NM_004360.3	738	aAa/aTa																																																																														
NF2	0	MSKCC	GRCh37	22	30032737	30032737	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	A			P-0009247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			80	256	200	0	ENST00000338641.4:c.115-3C>A		p.X39_splice	ENST00000338641	NM_000268.3	39																																																																															
GSK3B	0	MSKCC	GRCh37	3	119582332	119582332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	55	277	0	ENST00000316626.5:c.1069C>T	p.Arg357Trp	p.R357W	ENST00000316626		357	Cgg/Tgg																																																																														
ROS1	0	MSKCC	GRCh37	6	117658408	117658408	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0009247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	520	502	0	ENST00000368508.3:c.5175T>G	p.Tyr1725Ter	p.Y1725*	ENST00000368508	NM_002944.2	1725	taT/taG																																																																														
PREX2	0	MSKCC	GRCh37	8	68965467	68965467	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			971	150	527	0	ENST00000288368.4:c.1079G>C	p.Arg360Thr	p.R360T	ENST00000288368	NM_024870.2	360	aGa/aCa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060929	38060931	+	missense_variant	Missense_Mutation	ONP	AGG	AGG	GGT			P-0009247-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	58	278	0	ENST00000250448.2:c.1058_1060delinsACC	p.Ala353_Ser354delinsAspPro	p.A353_S354delinsDP	ENST00000250448	NM_004496.3	353	gCCTcc/gACCcc																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	55	447	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
SOS1	0	MSKCC	GRCh37	2	39214636	39214636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			861	99	753	0	ENST00000402219.2:c.3488C>G	p.Pro1163Arg	p.P1163R	ENST00000402219	NM_005633.3	1163	cCa/cGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009406-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			617	361	618	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185181413	185181413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009406-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			949	168	696	0	ENST00000265026.3:c.1354G>C	p.Glu452Gln	p.E452Q	ENST00000265026	NM_004721.4	452	Gaa/Caa																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185181440	185181440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009406-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			934	154	693	0	ENST00000265026.3:c.1381G>C	p.Glu461Gln	p.E461Q	ENST00000265026	NM_004721.4	461	Gag/Cag																																																																														
TET1	0	MSKCC	GRCh37	10	70405802	70405802	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009406-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			772	104	845	0	ENST00000373644.4:c.3316A>G	p.Ser1106Gly	p.S1106G	ENST00000373644	NM_030625.2	1106	Agc/Ggc																																																																														
YAP1	0	MSKCC	GRCh37	11	102056760	102056760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009406-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			344	116	506	0	ENST00000282441.5:c.700G>C	p.Asp234His	p.D234H	ENST00000282441	NM_001130145.2	234	Gat/Cat																																																																														
ATM	0	MSKCC	GRCh37	11	108188181	108188181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009406-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			436	140	590	2	ENST00000278616.4:c.6280G>A	p.Glu2094Lys	p.E2094K	ENST00000278616	NM_000051.3	2094	Gaa/Aaa																																																																														
ATM	0	MSKCC	GRCh37	11	108188190	108188190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009406-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			423	134	557	0	ENST00000278616.4:c.6289G>A	p.Glu2097Lys	p.E2097K	ENST00000278616	NM_000051.3	2097	Gaa/Aaa																																																																														
RB1	0	MSKCC	GRCh37	13	48923137	48923137	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009406-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			323	95	431	0	ENST00000267163.4:c.585G>A	p.Trp195Ter	p.W195*	ENST00000267163	NM_000321.2	195	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0009406-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			854	265	915	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18544137	18544137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009406-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			770	97	728	0	ENST00000266497.5:c.1954G>A	p.Glu652Lys	p.E652K	ENST00000266497		652	Gag/Aag																																																																														
ARID2	0	MSKCC	GRCh37	12	46244823	46244828	+	inframe_deletion	In_Frame_Del	DEL	TCACCA	TCACCA	-			P-0009406-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	101	1026	0	ENST00000334344.6:c.2922_2927del	p.Ser975_Pro976del	p.S975_P976del	ENST00000334344	NM_152641.2	973	TCACCA/-																																																																														
MLL3	0	MSKCC	GRCh37	7	151874913	151874919	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAAAT	GAAAAAT	AAAAAA			P-0009406-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			430	161	489	2	ENST00000262189.6:c.7619_7625delinsTTTTTT	p.His2540LeufsTer22	p.H2540Lfs*22	ENST00000262189	NM_170606.2	2540	cATTTTTCa/cTTTTTTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009640-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			88	82	446	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589608	67589771	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAAAAAAGTCGAGAATATGATAGATTATATGAAGAATATACCCGCACATCCCAGGTGAGTTTTCTATGAAAATCAGATTAAAAAATAAGAGTTCTAAACTTTTAAAGACTAACATGGAAAAAAGAATTTAAAAGGTTGAGTTTTTACGAATGAGGTGGGGGTG	AGAAAAAAGTCGAGAATATGATAGATTATATGAAGAATATACCCGCACATCCCAGGTGAGTTTTCTATGAAAATCAGATTAAAAAATAAGAGTTCTAAACTTTTAAAGACTAACATGGAAAAAAGAATTTAAAAGGTTGAGTTTTTACGAATGAGGTGGGGGTG	-			P-0009640-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			93	20	261	0	ENST00000274335.5:c.1374_1425+112del		p.X458_splice	ENST00000274335		458																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009745-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	76	431	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0009745-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	17	741	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0009861-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			793	130	540	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0009861-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			758	74	598	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0009927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			686	248	373	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	226	298	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																														
KDM6A	0	MSKCC	GRCh37	X	44921977	44921977	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009927-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			871	343	545	0	ENST00000377967.4:c.1511T>C	p.Leu504Ser	p.L504S	ENST00000377967	NM_021140.2	504	tTa/tCa																																																																														
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0009979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			205	177	653	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
RASA1	0	MSKCC	GRCh37	5	86665704	86665704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010533-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			597	32	365	0	ENST00000274376.6:c.1685C>T	p.Pro562Leu	p.P562L	ENST00000274376	NM_002890.2	562	cCa/cTa																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873802	35873802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010679-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	96	643	0	ENST00000216797.5:c.49C>G	p.Arg17Gly	p.R17G	ENST00000216797	NM_020529.2	17	Cgc/Ggc																																																																														
BAP1	0	MSKCC	GRCh37	3	52441182	52441239	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGCCTACCATGGTCAATGGGGTAGACCTTCAGCCCATCCAGCTCAAAGAGCCGGCCT	GTGCCTACCATGGTCAATGGGGTAGACCTTCAGCCCATCCAGCTCAAAGAGCCGGCCT	-			P-0010679-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			172	66	295	0	ENST00000460680.1:c.531_580+8del		p.X177_splice	ENST00000460680	NM_004656.3	177																																																																															
BAP1	0	MSKCC	GRCh37	3	52439286	52439286	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010679-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	125	825	0	ENST00000460680.1:c.956del	p.Ser319TyrfsTer16	p.S319Yfs*16	ENST00000460680	NM_004656.3	319	tCa/ta																																																																														
MRE11A	0	MSKCC	GRCh37	11	94219127	94219127	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010679-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	72	756	0	ENST00000323929.3:c.277del	p.Ile93PhefsTer17	p.I93Ffs*17	ENST00000323929	NM_005591.3	93	Att/tt																																																																														
NF2	0	MSKCC	GRCh37	22	30057231	30057231	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010679-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	110	704	0	ENST00000338641.4:c.715del	p.Leu239TrpfsTer12	p.L239Wfs*12	ENST00000338641	NM_000268.3	238	gCc/gc																																																																														
UPF1	0	MSKCC	GRCh37	19	18974332	18974332	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010679-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	124	863	0	ENST00000262803.5:c.2686A>C	p.Lys896Gln	p.K896Q	ENST00000262803	NM_002911.3	896	Aag/Cag																																																																														
BTK	0	MSKCC	GRCh37	X	100630242	100630242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010679-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			85	99	314	3	ENST00000308731.7:c.31C>A	p.Leu11Met	p.L11M	ENST00000308731	NM_000061.2	11	Ctg/Atg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812340	212812340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0010796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	155	436	0	ENST00000342788.4:c.236C>A	p.Ser79Tyr	p.S79Y	ENST00000342788	NM_005235.2	79	tCt/tAt																																																																														
ERF	0	MSKCC	GRCh37	19	42754633	42754633	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs111300456		P-0010796-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			640	227	811	0	ENST00000222329.4:c.107T>C	p.Leu36Pro	p.L36P	ENST00000222329	NM_006494.2	36	cTg/cCg																																																																														
MET	0	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	615	1247	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
STAT5A	0	MSKCC	GRCh37	17	40458409	40458409	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			154	245	424	0	ENST00000345506.4:c.1624A>G	p.Ser542Gly	p.S542G	ENST00000345506	NM_003152.3	542	Agc/Ggc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932041	36932041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			668	131	776	0	ENST00000361632.4:c.2428G>T	p.Asp810Tyr	p.D810Y	ENST00000361632		810	Gac/Tac																																																																														
MGA	0	MSKCC	GRCh37	15	42042599	42042599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010983-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	109	766	0	ENST00000219905.7:c.6794G>A	p.Arg2265Lys	p.R2265K	ENST00000219905	NM_001164273.1	2265	aGa/aAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			429	309	628	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
FGF3	0	MSKCC	GRCh37	11	69625251	69625251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148203315		P-0010995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	145	659	1	ENST00000334134.2:c.542G>A	p.Arg181His	p.R181H	ENST00000334134	NM_005247.2	181	cGc/cAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249020	55249022	+	missense_variant	Missense_Mutation	ONP	ACG	ACG	TCA			P-0010995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			369	275	407	0	ENST00000275493.2:c.2318_2320delinsTCA	p.His773_Val774delinsLeuMet	p.H773_V774delinsLM	ENST00000275493	NM_005228.3	773	cACGtg/cTCAtg																																																																														
TERT	0	MSKCC	GRCh37	5	1294753	1294753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010995-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	53	431	0	ENST00000310581.5:c.248G>T	p.Arg83Leu	p.R83L	ENST00000310581	NM_198253.2	83	cGa/cTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011113-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	877	748	2	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																														
CBL	0	MSKCC	GRCh37	11	119145566	119145566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011113-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	352	430	0	ENST00000264033.4:c.772T>C	p.Trp258Arg	p.W258R	ENST00000264033	NM_005188.3	258	Tgg/Cgg																																																																														
ELF3	0	MSKCC	GRCh37	1	201984357	201984357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011113-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1410	124	674	2	ENST00000359651.3:c.1022T>C	p.Ile341Thr	p.I341T	ENST00000359651		341	aTc/aCc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71941403	71941403	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C			P-0011113-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			771	593	582	0	ENST00000298229.2:c.1091-3T>C		p.X364_splice	ENST00000298229	NM_001567.3	364																																																																															
BRIP1	0	MSKCC	GRCh37	17	59820400	59820400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011113-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	125	592	1	ENST00000259008.2:c.2353C>A	p.Pro785Thr	p.P785T	ENST00000259008	NM_032043.2	785	Cct/Act																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602637	10602637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011198-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			863	214	599	0	ENST00000171111.5:c.941C>T	p.Thr314Met	p.T314M	ENST00000171111	NM_203500.1	314	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	735	547	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
LMO1	0	MSKCC	GRCh37	11	8252051	8252051	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			570	222	348	0	ENST00000335790.3:c.26G>T	p.Gly9Val	p.G9V	ENST00000335790	NM_002315.2	9	gGc/gTc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	365	690	1	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																														
TSHR	0	MSKCC	GRCh37	14	81557479	81557479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	291	491	0	ENST00000298171.2:c.459C>A	p.Phe153Leu	p.F153L	ENST00000298171	NM_000369.2	153	ttC/ttA																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099454	27099454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			565	250	387	0	ENST00000324856.7:c.3691G>T	p.Asp1231Tyr	p.D1231Y	ENST00000324856	NM_006015.4	1231	Gat/Tat																																																																														
PGR	0	MSKCC	GRCh37	11	100998843	100998843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			842	361	630	1	ENST00000325455.5:c.959C>A	p.Thr320Asn	p.T320N	ENST00000325455	NM_001202474.3	320	aCt/aAt																																																																														
FLT3	0	MSKCC	GRCh37	13	28599073	28599073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			480	289	472	0	ENST00000241453.7:c.2215G>T	p.Gly739Cys	p.G739C	ENST00000241453	NM_004119.2	739	Ggt/Tgt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828666	72828666	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	319	508	0	ENST00000268489.5:c.7915C>T	p.Gln2639Ter	p.Q2639*	ENST00000268489	NM_006885.3	2639	Cag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1219321	1219321	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	269	461	0	ENST00000326873.7:c.375-2A>C		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																															
EPHA5	0	MSKCC	GRCh37	4	66286284	66286284	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011243-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	170	243	0	ENST00000273854.3:c.1403-1G>T		p.X468_splice	ENST00000273854	NM_004439.5	468																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0011311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			919	79	545	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CARD11	0	MSKCC	GRCh37	7	2958190	2958190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			998	110	594	1	ENST00000396946.4:c.2542C>T	p.Arg848Cys	p.R848C	ENST00000396946	NM_032415.4	848	Cgc/Tgc																																																																														
TET1	0	MSKCC	GRCh37	10	70446110	70446110	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0011311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	56	356	0	ENST00000373644.4:c.5053-3C>G		p.X1685_splice	ENST00000373644	NM_030625.2	1685																																																																															
ARID2	0	MSKCC	GRCh37	12	46211475	46211477	+	frameshift_variant	Frame_Shift_Del	DEL	GCT	GCT	CC			P-0011311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	26	228	0	ENST00000334344.6:c.441_443delinsCC	p.Leu148ArgfsTer67	p.L148Rfs*67	ENST00000334344	NM_152641.2	147	ggGCTg/ggCCg																																																																														
SPRED1	0	MSKCC	GRCh37	15	38614537	38614538	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	150	626	0	ENST00000299084.4:c.304dup	p.Thr102AsnfsTer7	p.T102Nfs*7	ENST00000299084	NM_152594.2	101	-/A																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346897	89346897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	45	209	0	ENST00000301030.4:c.6053del	p.Pro2018LeufsTer69	p.P2018Lfs*69	ENST00000301030	NM_001256183.1	2018	cCt/ct																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66526429	66526429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			726	171	386	0	ENST00000358598.2:c.985C>G	p.Leu329Val	p.L329V	ENST00000358598	NM_212471.2	329	Cta/Gta																																																																														
SETD2	0	MSKCC	GRCh37	3	47164620	47164623	+	frameshift_variant	Frame_Shift_Del	DEL	TAAG	TAAG	-			P-0011311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	50	303	0	ENST00000409792.3:c.1503_1506del	p.Tyr501Ter	p.Y501*	ENST00000409792	NM_014159.6	501	taCTTA/ta																																																																														
APC	0	MSKCC	GRCh37	5	112154829	112154829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			992	198	597	0	ENST00000257430.4:c.1100C>G	p.Ser367Cys	p.S367C	ENST00000257430	NM_000038.5	367	tCt/tGt																																																																														
LATS1	0	MSKCC	GRCh37	6	150001124	150001124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			769	85	505	0	ENST00000253339.5:c.2480G>A	p.Arg827Lys	p.R827K	ENST00000253339		827	aGa/aAa																																																																														
CARD11	0	MSKCC	GRCh37	7	2974238	2974238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011311-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1204	115	743	0	ENST00000396946.4:c.1367C>A	p.Thr456Asn	p.T456N	ENST00000396946	NM_032415.4	456	aCc/aAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	1030	820	1	ENST00000269305.4:c.636dup	p.Arg213SerfsTer3	p.R213Sfs*3	ENST00000269305	NM_001126112.2	212	-/T																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0012109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	204	421	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																														
NTRK1	0	MSKCC	GRCh37	1	156838333	156838333	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	472	889	1	ENST00000524377.1:c.611C>G	p.Ser204Trp	p.S204W	ENST00000524377	NM_002529.3	204	tCg/tGg																																																																														
SETD2	0	MSKCC	GRCh37	3	47084177	47084177	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			952	219	445	0	ENST00000409792.3:c.7112T>A	p.Val2371Glu	p.V2371E	ENST00000409792	NM_014159.6	2371	gTg/gAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89690821	89690821	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012109-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			129	211	435	1	ENST00000371953.3:c.228T>A	p.Tyr76Ter	p.Y76*	ENST00000371953	NM_000314.4	76	taT/taA																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0012181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	208	401	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	262	576	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
ATM	0	MSKCC	GRCh37	11	108172490	108172490	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	186	442	0	ENST00000278616.4:c.5293C>T	p.Gln1765Ter	p.Q1765*	ENST00000278616	NM_000051.3	1765	Cag/Tag																																																																														
BBC3	0	MSKCC	GRCh37	19	47731532	47731532	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			79	45	69	0	ENST00000449228.1:c.260del	p.Pro87LeufsTer142	p.P87Lfs*142	ENST00000449228	NM_001127240.2	87	cCt/ct																																																																														
BAP1	0	MSKCC	GRCh37	3	52439146	52439146	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012181-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	361	682	0	ENST00000460680.1:c.1096T>G	p.Tyr366Asp	p.Y366D	ENST00000460680	NM_004656.3	366	Tat/Gat																																																																														
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012289-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			693	169	885	1	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	CA			P-0012289-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			841	358	889	3	ENST00000256078.4:c.182_183delAAinsTG	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTG																																																																														
TOP1	0	MSKCC	GRCh37	20	39728765	39728765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012289-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			800	174	819	0	ENST00000361337.2:c.1045A>G	p.Arg349Gly	p.R349G	ENST00000361337	NM_003286.2	349	Agg/Ggg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0012473-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	311	733	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
MED12	0	MSKCC	GRCh37	X	70339266	70339286	+	inframe_deletion	In_Frame_Del	DEL	AGCCTGCTGTCTCTGGGGATG	AGCCTGCTGTCTCTGGGGATG	-			P-0012473-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			643	271	612	0	ENST00000374080.3:c.146_166del	p.Pro49_Glu55del	p.P49_E55del	ENST00000374080		48	cAGCCTGCTGTCTCTGGGGATGag/cag																																																																														
MCL1	0	MSKCC	GRCh37	1	150551688	150551692	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCC	GCGCC	-			P-0012473-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	148	372	0	ENST00000369026.2:c.315_319del	p.Pro107Ter	p.P107*	ENST00000369026	NM_021960.4	105	gcGGCGCcg/gccg																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	44	701	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141502	11141502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	46	818	1	ENST00000344626.4:c.3479G>T	p.Gly1160Val	p.G1160V	ENST00000344626	NM_003072.3	1160	gGg/gTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094376	27094377	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			537	61	712	1	ENST00000324856.7:c.3084_3085delGGinsCT	p.Ala1029Ser	p.A1029S	ENST00000324856	NM_006015.4	1028	ctGGcc/ctCTcc																																																																														
NUF2	0	MSKCC	GRCh37	1	163315581	163315581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	138	726	0	ENST00000271452.3:c.921G>T	p.Arg307Ser	p.R307S	ENST00000271452	NM_145697.2	307	agG/agT																																																																														
RET	0	MSKCC	GRCh37	10	43607607	43607607	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	42	915	0	ENST00000355710.3:c.1583G>C	p.Cys528Ser	p.C528S	ENST00000355710	NM_020975.4	528	tGt/tCt																																																																														
PGR	0	MSKCC	GRCh37	11	100999621	100999621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	118	1176	0	ENST00000325455.5:c.181C>T	p.Pro61Ser	p.P61S	ENST00000325455	NM_001202474.3	61	Cct/Tct																																																																														
ATM	0	MSKCC	GRCh37	11	108141818	108141818	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			844	119	790	0	ENST00000278616.4:c.2866G>T	p.Gly956Ter	p.G956*	ENST00000278616	NM_000051.3	956	Gga/Tga																																																																														
RAB35	0	MSKCC	GRCh37	12	120546261	120546261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	43	846	0	ENST00000229340.5:c.63G>C	p.Lys21Asn	p.K21N	ENST00000229340	NM_006861.6	21	aaG/aaC																																																																														
RAF1	0	MSKCC	GRCh37	3	12650279	12650279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			932	81	798	0	ENST00000251849.4:c.567C>G	p.Asn189Lys	p.N189K	ENST00000251849	NM_002880.3	189	aaC/aaG																																																																														
PMS2	0	MSKCC	GRCh37	7	6035242	6035242	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			682	65	689	0	ENST00000265849.7:c.826T>G	p.Cys276Gly	p.C276G	ENST00000265849	NM_000535.5	276	Tgc/Ggc																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540214	23540214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	47	520	1	ENST00000380871.4:c.189G>T	p.Glu63Asp	p.E63D	ENST00000380871	NM_006167.3	63	gaG/gaT																																																																														
RBM10	0	MSKCC	GRCh37	X	47032555	47032555	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	27	740	0	ENST00000329236.7:c.230T>G	p.Val77Gly	p.V77G	ENST00000329236	NM_001204466.1	77	gTg/gGg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			833	52	765	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																														
MYC	0	MSKCC	GRCh37	8	128750639	128750639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	46	542	0	ENST00000377970.2:c.176C>T	p.Ala59Val	p.A59V	ENST00000377970	NM_002467.4	59	gCg/gTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900863	3900863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			822	68	620	0	ENST00000262367.5:c.233G>A	p.Ser78Asn	p.S78N	ENST00000262367	NM_004380.2	78	aGc/aAc																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574004	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAACATCTCGAAGCGCTCACGCCCAC			P-0012548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	62	810	1	ENST00000269305.4:c.998_1023dup	p.Arg342ValfsTer12	p.R342Vfs*12	ENST00000269305	NM_001126112.2	341	-/GTGGGCGTGAGCGCTTCGAGATGTTC																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245480	153245480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			846	54	661	0	ENST00000281708.4:c.1711G>A	p.Gly571Arg	p.G571R	ENST00000281708	NM_033632.3	571	Ggg/Agg																																																																														
FAT1	0	MSKCC	GRCh37	4	187630740	187630740	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			998	68	629	0	ENST00000441802.2:c.242delA	p.Asn81ThrfsTer16	p.N81Tfs*16	ENST00000441802	NM_005245.3	81	aAc/ac																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591277	67591278	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0012548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			671	43	428	0	ENST00000274335.5:c.1776_1777del	p.Lys593ValfsTer8	p.K593Vfs*8	ENST00000274335		592	aAG/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0012572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	144	1047	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
RET	0	MSKCC	GRCh37	10	43623672	43623687	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTTCACCCTCAGCG	GCTTTCACCCTCAGCG	-			P-0012572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	54	877	1	ENST00000355710.3:c.3302_3317delTTTCACCCTCAGCGGC	p.Leu1101GlnfsTer3	p.L1101Qfs*3	ENST00000355710	NM_020975.4	1100	atGCTTTCACCCTCAGCG/at																																																																														
NTRK3	0	MSKCC	GRCh37	15	88428958	88428958	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			243	71	709	0	ENST00000360948.2:c.2142T>A	p.Asn714Lys	p.N714K	ENST00000360948	NM_001012338.2	714	aaT/aaA																																																																														
SPOP	0	MSKCC	GRCh37	17	47699394	47699394	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012572-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	62	801	0	ENST00000347630.2:c.114C>G	p.Ile38Met	p.I38M	ENST00000347630	NM_001007230.1	38	atC/atG																																																																														
PTPN11	0	MSKCC	GRCh37	12	112888189	112888189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012629-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			565	177	684	5	ENST00000351677.2:c.205G>A	p.Glu69Lys	p.E69K	ENST00000351677	NM_002834.3	69	Gag/Aag																																																																														
MET	0	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0012629-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			922	164	883	1	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
CDK6	0	MSKCC	GRCh37	7	92247520	92247520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012629-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			268	33	284	0	ENST00000265734.4:c.700G>T	p.Val234Leu	p.V234L	ENST00000265734	NM_001259.6	234	Gtg/Ttg																																																																														
CBL	0	MSKCC	GRCh37	11	119149251	119149251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012629-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			713	15	615	2	ENST00000264033.4:c.1259G>T	p.Arg420Leu	p.R420L	ENST00000264033	NM_005188.3	420	cGa/cTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031928	10031928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012629-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			556	59	535	0	ENST00000330684.3:c.895C>G	p.Leu299Val	p.L299V	ENST00000330684	NM_001134407.1	299	Cta/Gta																																																																														
SOS1	0	MSKCC	GRCh37	2	39251221	39251221	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012629-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			620	156	763	4	ENST00000402219.2:c.1132A>T	p.Thr378Ser	p.T378S	ENST00000402219	NM_005633.3	378	Aca/Tca																																																																														
PARK2	0	MSKCC	GRCh37	6	162475146	162475146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012629-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			672	37	584	0	ENST00000366898.1:c.595C>T	p.Pro199Ser	p.P199S	ENST00000366898	NM_004562.2	199	Cca/Tca																																																																														
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012675-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			74	418	358	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151853077	151853077	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012675-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	637	490	0	ENST00000262189.6:c.11878C>T	p.Arg3960Ter	p.R3960*	ENST00000262189	NM_170606.2	3960	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012834-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			349	315	428	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
SUFU	0	MSKCC	GRCh37	10	104377055	104377055	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012834-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	98	301	0	ENST00000369902.3:c.1166T>C	p.Leu389Pro	p.L389P	ENST00000369902	NM_016169.3	389	cTc/cCc																																																																														
CALR	0	MSKCC	GRCh37	19	13054524	13054524	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0012834-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			823	111	245	0	ENST00000316448.5:c.1054-3C>T		p.X352_splice	ENST00000316448	NM_004343.3	352																																																																															
MED12	0	MSKCC	GRCh37	X	70352751	70352752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0012834-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	217	318	0	ENST00000374080.3:c.4473_4474dup	p.Gln1492ArgfsTer21	p.Q1492Rfs*21	ENST00000374080		1491	ggg/ggGCg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012850-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			736	106	664	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0012850-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	320	792	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
MDM2	0	MSKCC	GRCh37	12	69233408	69233408	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012850-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1907	302	544	0	ENST00000462284.1:c.1273A>C	p.Thr425Pro	p.T425P	ENST00000462284	NM_002392.5	425	Acc/Ccc																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281768	49281768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148425155		P-0012850-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			84	410	776	0	ENST00000282018.3:c.815C>T	p.Thr272Met	p.T272M	ENST00000282018	NM_020377.2	272	aCg/aTg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967180	134967180	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012850-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	62	486	0	ENST00000398015.3:c.2519A>T	p.Asp840Val	p.D840V	ENST00000398015	NM_004441.4	840	gAc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012870-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			761	88	736	1				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0012870-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			467	115	596	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739100	40739100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012870-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			559	112	604	0	ENST00000373198.4:c.3184C>T	p.Arg1062Cys	p.R1062C	ENST00000373198	NM_133170.3	1062	Cgc/Tgc																																																																														
FANCA	0	MSKCC	GRCh37	16	89845378	89845378	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012870-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			796	61	862	0	ENST00000389301.3:c.1749C>G	p.Phe583Leu	p.F583L	ENST00000389301	NM_000135.2	583	ttC/ttG																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106151	27106173	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTGACCGAGGATGGAGCTAAG	CCTTGACCGAGGATGGAGCTAAG	-			P-0012870-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			507	43	552	0	ENST00000324856.7:c.5762_5784del	p.Thr1921LysfsTer16	p.T1921Kfs*16	ENST00000324856	NM_006015.4	1921	aCCTTGACCGAGGATGGAGCTAAG/a																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435649	18435649	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012870-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			304	26	374	0	ENST00000266497.5:c.634C>G	p.Leu212Val	p.L212V	ENST00000266497		212	Ctt/Gtt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830457	72830457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012870-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			365	38	422	0	ENST00000268489.5:c.6124C>A	p.Pro2042Thr	p.P2042T	ENST00000268489	NM_006885.3	2042	Cct/Act																																																																														
GPS2	0	MSKCC	GRCh37	17	7217298	7217298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012870-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			375	79	545	0	ENST00000380728.2:c.407G>A	p.Gly136Glu	p.G136E	ENST00000380728		136	gGa/gAa																																																																														
GPS2	0	MSKCC	GRCh37	17	7217911	7217911	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012870-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			368	71	473	0	ENST00000380728.2:c.100G>T	p.Glu34Ter	p.E34*	ENST00000380728		34	Gaa/Taa																																																																														
FLCN	0	MSKCC	GRCh37	17	17131373	17131373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012870-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			550	90	694	2	ENST00000285071.4:c.79G>T	p.Ala27Ser	p.A27S	ENST00000285071	NM_144997.5	27	Gcc/Tcc																																																																														
AMER1	0	MSKCC	GRCh37	X	63409998	63409998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012870-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			176	144	242	0	ENST00000330258.3:c.3169G>A	p.Glu1057Lys	p.E1057K	ENST00000330258	NM_152424.3	1057	Gag/Aag																																																																														
SETD2	0	MSKCC	GRCh37	3	47164717	47164717	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0012870-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			369	27	396	0	ENST00000409792.3:c.1409C>G	p.Ser470Ter	p.S470*	ENST00000409792	NM_014159.6	470	tCa/tGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013059-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	901	472	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013059-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	538	597	0	ENST00000269305.4:c.581T>C	p.Leu194Pro	p.L194P	ENST00000269305	NM_001126112.2	194	cTt/cCt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			327	255	444	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	0	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	317	731	0	ENST00000371953.3:c.518G>C	p.Arg173Pro	p.R173P	ENST00000371953	NM_000314.4	173	cGc/cCc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			685	136	604	3	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	88	361	2	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	106	297	5	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			978	210	846	7	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066557	94066557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	139	563	0	ENST00000369303.4:c.1202C>T	p.Thr401Ile	p.T401I	ENST00000369303	NM_004440.3	401	aCt/aTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088681	27088682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	288	1031	0	ENST00000324856.7:c.2296dup	p.Gln766ProfsTer51	p.Q766Pfs*51	ENST00000324856	NM_006015.4	764	tcc/tCcc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023093	27023093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			57	26	63	0	ENST00000324856.7:c.199C>T	p.Gln67Ter	p.Q67*	ENST00000324856	NM_006015.4	67	Cag/Tag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831378	72831378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	77	266	0	ENST00000268489.5:c.5203delC	p.Gln1735AsnfsTer32	p.Q1735Nfs*32	ENST00000268489	NM_006885.3	1735	Caa/aa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1241	320	1239	13	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			856	203	856	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445500	49445500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			851	237	1020	2	ENST00000301067.7:c.1966delC	p.Leu656CysfsTer274	p.L656Cfs*274	ENST00000301067	NM_003482.3	656	Ctg/tg																																																																														
RET	0	MSKCC	GRCh37	10	43615053	43615053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	195	771	1	ENST00000355710.3:c.2467G>T	p.Gly823Trp	p.G823W	ENST00000355710	NM_020975.4	823	Ggg/Tgg																																																																														
SESN3	0	MSKCC	GRCh37	11	94917642	94917644	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			789	163	960	0	ENST00000536441.1:c.877_879delGAG	p.Glu293del	p.E293del	ENST00000536441	NM_144665.3	293	GAG/-																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118374497	118374498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	128	492	0	ENST00000534358.1:c.7896dup	p.Gly2633TrpfsTer13	p.G2633Wfs*13	ENST00000534358	NM_005933.3	2630	-/T																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434052	49434052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			702	182	717	0	ENST00000301067.7:c.7501G>A	p.Gly2501Arg	p.G2501R	ENST00000301067	NM_003482.3	2501	Ggg/Agg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49441824	49441824	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			984	186	782	0	ENST00000301067.7:c.4160G>C	p.Gly1387Ala	p.G1387A	ENST00000301067	NM_003482.3	1387	gGc/gCc																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134013	41134013	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	117	415	0	ENST00000379561.5:c.1615delC	p.Leu539CysfsTer5	p.L539Cfs*5	ENST00000379561	NM_002015.3	539	Ctg/tg																																																																														
TSC2	0	MSKCC	GRCh37	16	2137932	2137932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			847	212	863	1	ENST00000219476.3:c.5058G>T	p.Gln1686His	p.Q1686H	ENST00000219476	NM_000548.3	1686	caG/caT																																																																														
SLX4	0	MSKCC	GRCh37	16	3641198	3641198	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1299	312	1346	0	ENST00000294008.3:c.2441A>T	p.Asn814Ile	p.N814I	ENST00000294008	NM_032444.2	814	aAt/aTt																																																																														
MSI2	0	MSKCC	GRCh37	17	55752342	55752342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			951	203	898	0	ENST00000284073.2:c.800C>T	p.Pro267Leu	p.P267L	ENST00000284073	NM_138962.2	267	cCg/cTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119767	70119767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			874	252	906	2	ENST00000245479.2:c.769C>T	p.Arg257Cys	p.R257C	ENST00000245479	NM_000346.3	257	Cgc/Tgc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212196	36212206	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTCAGTTTA	CCCTCAGTTTA	-			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			858	182	875	0	ENST00000222270.7:c.1950_1960delTCAGTTTACCC	p.Gln651LysfsTer21	p.Q651Kfs*21	ENST00000222270	NM_014727.1	649	gcCCCTCAGTTTAcc/gccc																																																																														
EP300	0	MSKCC	GRCh37	22	41547850	41547850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	118	623	0	ENST00000263253.7:c.2831C>T	p.Ala944Val	p.A944V	ENST00000263253	NM_001429.3	944	gCt/gTt																																																																														
GATA2	0	MSKCC	GRCh37	3	128205004	128205004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			587	138	551	0	ENST00000341105.2:c.437delG	p.Gly146ValfsTer72	p.G146Vfs*72	ENST00000341105	NM_032638.4	146	gGt/gt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67592119	67592120	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	107	344	0	ENST00000274335.5:c.1937_1938delTT	p.Phe646SerfsTer7	p.F646Sfs*7	ENST00000274335		645	acTTtt/actt																																																																														
CDK6	0	MSKCC	GRCh37	7	92247445	92247445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	29	438	1	ENST00000265734.4:c.775G>A	p.Ala259Thr	p.A259T	ENST00000265734	NM_001259.6	259	Gcc/Acc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38273543	38273543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			686	155	559	1	ENST00000425967.3:c.1792G>T	p.Gly598Cys	p.G598C	ENST00000425967	NM_001174067.1	598	Ggc/Tgc																																																																														
SOX17	0	MSKCC	GRCh37	8	55370781	55370782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	197	327	0	ENST00000297316.4:c.86_87dupCC	p.Cys30ProfsTer8	p.C30Pfs*8	ENST00000297316	NM_022454.3	28	ggc/ggCCc																																																																														
SYK	0	MSKCC	GRCh37	9	93650836	93650836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	117	457	1	ENST00000375746.1:c.1762G>A	p.Gly588Arg	p.G588R	ENST00000375746	NM_001174167.1	588	Gga/Aga																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226063	53226063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			830	214	923	0	ENST00000375401.3:c.2786G>A	p.Arg929Gln	p.R929Q	ENST00000375401	NM_004187.3	929	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013115-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			759	226	688	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0013115-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			955	380	986	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013115-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			907	323	831	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
CASP8	0	MSKCC	GRCh37	2	202151293	202151293	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013115-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			876	306	860	0	ENST00000358485.4:c.1593A>C	p.Lys531Asn	p.K531N	ENST00000358485	NM_001080125.1	531	aaA/aaC																																																																														
TBX3	0	MSKCC	GRCh37	12	115112430	115112431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013115-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			814	261	795	0	ENST00000257566.3:c.1309dup	p.His437ProfsTer2	p.H437Pfs*2	ENST00000257566	NM_016569.3	437	cat/cCat																																																																														
ALK	0	MSKCC	GRCh37	2	29456563	29456563	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0013115-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			836	189	670	0	ENST00000389048.3:c.2356-1G>A		p.X786_splice	ENST00000389048	NM_004304.4	786																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0013162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	159	394	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49439907	49439907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			709	58	362	0	ENST00000301067.7:c.4634A>G	p.Gln1545Arg	p.Q1545R	ENST00000301067	NM_003482.3	1545	cAg/cGg																																																																														
MGA	0	MSKCC	GRCh37	15	41991086	41991086	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			851	92	341	0	ENST00000219905.7:c.2039A>C	p.Asp680Ala	p.D680A	ENST00000219905	NM_001164273.1	680	gAt/gCt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224590	36224590	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0013162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	89	420	2	ENST00000222270.7:c.7049+3G>T		p.X2350_splice	ENST00000222270	NM_014727.1	2350																																																																															
RAC1	0	MSKCC	GRCh37	7	6431563	6431563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013162-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	37	83	0	ENST00000356142.4:c.116A>G	p.Asn39Ser	p.N39S	ENST00000356142	NM_018890.3	39	aAt/aGt																																																																														
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013223-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			879	166	942	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
MGA	0	MSKCC	GRCh37	15	42041395	42041396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013223-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			726	138	786	0	ENST00000219905.7:c.5591dup	p.Met1864IlefsTer29	p.M1864Ifs*29	ENST00000219905	NM_001164273.1	1864	atg/aTtg																																																																														
NF1	0	MSKCC	GRCh37	17	29490261	29490290	+	inframe_deletion	In_Frame_Del	DEL	GAAATCTGCCATTTTCTTCACACCTGTCGT	GAAATCTGCCATTTTCTTCACACCTGTCGT	-			P-0013280-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	49	667	0	ENST00000358273.4:c.349_378del	p.Ile117_Glu126del	p.I117_E126del	ENST00000358273	NM_001042492.2	116	GAAATCTGCCATTTTCTTCACACCTGTCGT/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578499	7578510	+	inframe_deletion	In_Frame_Del	DEL	TGCACAGGGCAG	TGCACAGGGCAG	-			P-0013280-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	158	1124	0	ENST00000269305.4:c.420_431del	p.Cys141_Gln144del	p.C141_Q144del	ENST00000269305	NM_001126112.2	140	acCTGCCCTGTGCAg/acg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25973212	25973227	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTTTTCTTTACTTT	GGGTTTTCTTTACTTT	-			P-0013280-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	35	451	0	ENST00000435504.4:c.1198_1213del	p.Lys400GlnfsTer18	p.K400Qfs*18	ENST00000435504		400	AAAGTAAAGAAAACCCca/ca																																																																														
PREX2	0	MSKCC	GRCh37	8	68965476	68965476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013280-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	57	838	1	ENST00000288368.4:c.1088G>A	p.Arg363Gln	p.R363Q	ENST00000288368	NM_024870.2	363	cGg/cAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1261	523	498	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	586	353	2	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	732	449	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																														
SPEN	0	MSKCC	GRCh37	1	16203094	16203094	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			757	188	372	0	ENST00000375759.3:c.802T>G	p.Ser268Ala	p.S268A	ENST00000375759	NM_015001.2	268	Tcc/Gcc																																																																														
DIS3	0	MSKCC	GRCh37	13	73337663	73337663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			896	156	307	0	ENST00000377767.4:c.2053C>G	p.His685Asp	p.H685D	ENST00000377767	NM_014953.3	685	Cat/Gat																																																																														
RNF43	0	MSKCC	GRCh37	17	56448387	56448387	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	660	482	0	ENST00000407977.2:c.260del	p.Pro87ArgfsTer71	p.P87Rfs*71	ENST00000407977		87	cCg/cg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10250399	10250399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1479	364	352	0	ENST00000340748.4:c.3853C>T	p.Arg1285Cys	p.R1285C	ENST00000340748		1285	Cgc/Tgc																																																																														
TOP1	0	MSKCC	GRCh37	20	39728699	39728699	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			858	90	302	0	ENST00000361337.2:c.979A>C	p.Ile327Leu	p.I327L	ENST00000361337	NM_003286.2	327	Atc/Ctc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93973626	93973626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			884	215	370	0	ENST00000369303.4:c.1750G>A	p.Gly584Ser	p.G584S	ENST00000369303	NM_004440.3	584	Ggt/Agt																																																																														
BRAF	0	MSKCC	GRCh37	7	140487343	140487345	+	splice_region_variant,intron_variant	Splice_Region	DEL	CTT	CTT	-			P-0013290-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	1188	654	0	ENST00000288602.6:c.1177+3_1177+5del		p.X393_splice	ENST00000288602	NM_004333.4	393																																																																															
ARID1A	0	MSKCC	GRCh37	1	27106904	27106904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013358-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	324	517	0	ENST00000324856.7:c.6515C>T	p.Ala2172Val	p.A2172V	ENST00000324856	NM_006015.4	2172	gCc/gTc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139873	55139873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013358-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	246	428	0	ENST00000257290.5:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000257290	NM_006206.4	512	Cga/Tga																																																																														
MSI2	0	MSKCC	GRCh37	17	55752425	55752425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013358-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			813	582	1362	1	ENST00000284073.2:c.883G>A	p.Val295Met	p.V295M	ENST00000284073	NM_138962.2	295	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			895	37	510	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177068	56177068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			726	101	343	0	ENST00000399503.3:c.2338G>A	p.Asp780Asn	p.D780N	ENST00000399503	NM_005921.1	780	Gat/Aat																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178683	56178684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTACA			P-0013613-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			516	88	221	0	ENST00000399503.3:c.3657_3658insTACAT	p.Gln1220TyrfsTer27	p.Q1220Yfs*27	ENST00000399503	NM_005921.1	1219	att/atTTACAt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831465	72831465	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013865-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			183	529	833	1	ENST00000268489.5:c.5116del	p.Glu1706SerfsTer13	p.E1706Sfs*13	ENST00000268489	NM_006885.3	1706	Gag/ag																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9778779	9778780	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			450	275	744	2	ENST00000377346.4:c.1048_1049delinsAA	p.Gly350Asn	p.G350N	ENST00000377346	NM_005026.3	350	GGc/AAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			612	435	899	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
IGF1	0	MSKCC	GRCh37	12	102813397	102813397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			575	145	728	0	ENST00000307046.8:c.292C>G	p.Arg98Gly	p.R98G	ENST00000307046	NM_001111285.1	98	Cgg/Ggg																																																																														
BLM	0	MSKCC	GRCh37	15	91352431	91352432	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	T			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			539	237	596	1	ENST00000355112.3:c.3816_3817delinsT	p.Glu1272AspfsTer7	p.E1272Dfs*7	ENST00000355112	NM_000057.2	1272	gaAAaa/gaTaa																																																																														
SLX4	0	MSKCC	GRCh37	16	3641214	3641214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	248	1333	1	ENST00000294008.3:c.2425G>A	p.Glu809Lys	p.E809K	ENST00000294008	NM_032444.2	809	Gaa/Aaa																																																																														
SLX4	0	MSKCC	GRCh37	16	3644471	3644471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			890	240	1186	0	ENST00000294008.3:c.2143C>T	p.Pro715Ser	p.P715S	ENST00000294008	NM_032444.2	715	Ccg/Tcg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37872829	37872829	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			621	189	970	0	ENST00000269571.5:c.1708C>T	p.Gln570Ter	p.Q570*	ENST00000269571		570	Cag/Tag																																																																														
SMAD2	0	MSKCC	GRCh37	18	45394730	45394730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			627	94	706	0	ENST00000262160.6:c.619C>T	p.Pro207Ser	p.P207S	ENST00000262160	NM_005901.5	207	Cca/Tca																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4099351	4099351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			996	138	1165	1	ENST00000262948.5:c.767C>T	p.Ser256Phe	p.S256F	ENST00000262948	NM_030662.3	256	tCc/tTc																																																																														
BRD4	0	MSKCC	GRCh37	19	15366278	15366279	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			547	207	803	3	ENST00000263377.2:c.1876_1877delinsTT	p.Pro626Phe	p.P626F	ENST00000263377	NM_058243.2	626	CCc/TTc																																																																														
ALK	0	MSKCC	GRCh37	2	29443592	29443592	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			598	231	822	0	ENST00000389048.3:c.3625C>T	p.Arg1209Ter	p.R1209*	ENST00000389048	NM_004304.4	1209	Cga/Tga																																																																														
SOS1	0	MSKCC	GRCh37	2	39281963	39281963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			196	61	337	0	ENST00000402219.2:c.512T>G	p.Val171Gly	p.V171G	ENST00000402219	NM_005633.3	171	gTa/gGa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546788	9546788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			304	171	448	0	ENST00000353224.5:c.1234C>T	p.Pro412Ser	p.P412S	ENST00000353224	NM_177990.2	412	Ccg/Tcg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			466	191	716	0				ENST00000310581	NM_198253.2																																																																																
RAD50	0	MSKCC	GRCh37	5	131930595	131930595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			464	49	487	0	ENST00000265335.6:c.1828C>T	p.His610Tyr	p.H610Y	ENST00000265335		610	Cat/Tat																																																																														
MDC1	0	MSKCC	GRCh37	6	30676114	30676114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			398	129	433	1	ENST00000376406.3:c.2242G>A	p.Glu748Lys	p.E748K	ENST00000376406	NM_014641.2	748	Gag/Aag																																																																														
TAP2	0	MSKCC	GRCh37	6	32805731	32805731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			676	199	790	0	ENST00000374899.4:c.280G>A	p.Val94Ile	p.V94I	ENST00000374899	NM_018833.2	94	Gtc/Atc																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5549499	5549499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			710	197	1007	1	ENST00000397747.3:c.526G>A	p.Val176Ile	p.V176I	ENST00000397747	NM_025239.3	176	Gtc/Atc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521405	8521405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			545	192	1005	0	ENST00000356435.5:c.833C>T	p.Pro278Leu	p.P278L	ENST00000356435		278	cCt/cTt																																																																														
AR	0	MSKCC	GRCh37	X	66905921	66905921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			599	158	806	1	ENST00000374690.3:c.1838C>T	p.Pro613Leu	p.P613L	ENST00000374690	NM_000044.3	613	cCa/cTa																																																																														
ATRX	0	MSKCC	GRCh37	X	76855277	76855277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014047-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			392	87	654	0	ENST00000373344.5:c.5710G>A	p.Glu1904Lys	p.E1904K	ENST00000373344	NM_000489.3	1904	Gaa/Aaa																																																																														
GLI1	0	MSKCC	GRCh37	12	57864466	57864466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014223-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	198	389	0	ENST00000228682.2:c.1943G>A	p.Arg648His	p.R648H	ENST00000228682	NM_005269.2	648	cGt/cAt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249016	55249017	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCACG			P-0014223-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	323	359	0	ENST00000275493.2:c.2315_2320dup	p.His773_Val774insAlaHis	p.H773_V774insAH	ENST00000275493	NM_005228.3	772	ccc/cCCCACGcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0014262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			730	155	617	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			826	168	847	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			391	39	339	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
MSH6	0	MSKCC	GRCh37	2	48023042	48023042	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	25	318	0	ENST00000234420.5:c.467C>G	p.Ser156Ter	p.S156*	ENST00000234420	NM_000179.2	156	tCa/tGa																																																																														
MSH6	0	MSKCC	GRCh37	2	48033962	48033962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	41	486	1	ENST00000234420.5:c.4046C>T	p.Ala1349Val	p.A1349V	ENST00000234420	NM_000179.2	1349	gCt/gTt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212252715	212252715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0014262-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	27	263	0	ENST00000342788.4:c.3138T>G	p.Ser1046Arg	p.S1046R	ENST00000342788	NM_005235.2	1046	agT/agG																																																																														
FAT1	0	MSKCC	GRCh37	4	187542201	187542201	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189523191		P-0014305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	136	364	0	ENST00000441802.2:c.5539G>A	p.Val1847Ile	p.V1847I	ENST00000441802	NM_005245.3	1847	Gtc/Atc																																																																														
KIT	0	MSKCC	GRCh37	4	55599321	55599321	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2752	227	450	0	ENST00000288135.5:c.2447A>T	p.Asp816Val	p.D816V	ENST00000288135	NM_000222.2	816	gAc/gTc																																																																														
SMO	0	MSKCC	GRCh37	7	128829066	128829066	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs41304185		P-0014305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			16	14	15	1	ENST00000249373.3:c.74A>G	p.Asp25Gly	p.D25G	ENST00000249373	NM_005631.4	25	gAc/gGc																																																																														
RET	0	MSKCC	GRCh37	10	43610148	43610148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			75	487	514	0	ENST00000355710.3:c.2100G>A	p.Met700Ile	p.M700I	ENST00000355710	NM_020975.4	700	atG/atA																																																																														
INPPL1	0	MSKCC	GRCh37	11	71944205	71944205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			805	187	472	0	ENST00000298229.2:c.2038G>A	p.Gly680Arg	p.G680R	ENST00000298229	NM_001567.3	680	Ggg/Agg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18478017	18478017	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	294	605	1	ENST00000266497.5:c.1257C>G	p.Tyr419Ter	p.Y419*	ENST00000266497		419	taC/taG																																																																														
SOX2	0	MSKCC	GRCh37	3	181431050	181431050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			565	269	528	1	ENST00000325404.1:c.902G>A	p.Gly301Asp	p.G301D	ENST00000325404	NM_003106.3	301	gGc/gAc																																																																														
JAK1	0	MSKCC	GRCh37	1	65301110	65301110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	123	244	1	ENST00000342505.4:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000342505	NM_002227.2	1113	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577091	7577091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014305-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1334	37	623	0	ENST00000269305.4:c.847C>G	p.Arg283Gly	p.R283G	ENST00000269305	NM_001126112.2	283	Cgc/Ggc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			644	72	474	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916924	178916926	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0014306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	120	403	0	ENST00000263967.3:c.311_313del	p.Pro104_Val105delinsLeu	p.P104_V105delinsL	ENST00000263967	NM_006218.2	104	cCAGta/cta																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346832	89346832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			197	26	209	0	ENST00000301030.4:c.6118G>A	p.Gly2040Arg	p.G2040R	ENST00000301030	NM_001256183.1	2040	Gga/Aga																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197160	26197160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014306-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	53	311	1	ENST00000356476.2:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000356476		107	Gac/Tac																																																																														
RARA	0	MSKCC	GRCh37	17	38511598	38511598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014333-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			861	243	549	1	ENST00000254066.5:c.1096C>T	p.Arg366Trp	p.R366W	ENST00000254066	NM_000964.3	366	Cgg/Tgg																																																																														
KIT	0	MSKCC	GRCh37	4	55602688	55602688	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014333-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	123	308	0	ENST00000288135.5:c.2509G>C	p.Ala837Pro	p.A837P	ENST00000288135	NM_000222.2	837	Gca/Cca																																																																														
ROS1	0	MSKCC	GRCh37	6	117700279	117700279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014333-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	509	637	0	ENST00000368508.3:c.2540G>T	p.Trp847Leu	p.W847L	ENST00000368508	NM_002944.2	847	tGg/tTg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0014372-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			738	148	769	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061313	38061313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014372-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			668	200	740	2	ENST00000250448.2:c.676G>A	p.Asp226Asn	p.D226N	ENST00000250448	NM_004496.3	226	Gac/Aac																																																																														
CDH1	0	MSKCC	GRCh37	16	68847393	68847393	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014372-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	194	684	0	ENST00000261769.5:c.1315del	p.Ala439GlnfsTer16	p.A439Qfs*16	ENST00000261769	NM_004360.3	439	Gca/ca																																																																														
FLT4	0	MSKCC	GRCh37	5	180030223	180030223	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200835339		P-0014372-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	189	644	2	ENST00000261937.6:c.4061G>A	p.Arg1354His	p.R1354H	ENST00000261937	NM_182925.4	1354	cGc/cAc																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014453-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	100	544	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0014453-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	52	287	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600408	10600408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014453-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			803	131	729	1	ENST00000171111.5:c.1447C>A	p.Arg483Ser	p.R483S	ENST00000171111	NM_203500.1	483	Cgc/Agc																																																																														
REL	0	MSKCC	GRCh37	2	61147241	61147241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014453-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			826	94	435	0	ENST00000295025.8:c.919C>G	p.His307Asp	p.H307D	ENST00000295025	NM_002908.2	307	Cac/Gac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178951955	178951955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014453-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			568	104	456	0	ENST00000263967.3:c.3010A>G	p.Met1004Val	p.M1004V	ENST00000263967	NM_006218.2	1004	Atg/Gtg																																																																														
RBM10	0	MSKCC	GRCh37	X	47040706	47040706	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014453-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	130	402	0	ENST00000329236.7:c.1108delC	p.Gln370ArgfsTer37	p.Q370Rfs*37	ENST00000329236	NM_001204466.1	369	agC/ag																																																																														
AR	0	MSKCC	GRCh37	X	66941796	66941796	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	113	316	0	ENST00000374690.3:c.2440T>G	p.Phe814Val	p.F814V	ENST00000374690	NM_000044.3	814	Ttc/Gtc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0014499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	543	1071	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
MITF	0	MSKCC	GRCh37	3	70008546	70008546	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014499-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			773	129	526	0	ENST00000352241.4:c.1136A>C	p.Asn379Thr	p.N379T	ENST00000352241	NM_198159.2	379	aAc/aCc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014899-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	193	441	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0014899-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	603	501	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MGA	0	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014899-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	243	377	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																														
MGA	0	MSKCC	GRCh37	15	42041097	42041098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0014899-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	233	448	0	ENST00000219905.7:c.5476_5477dupTT	p.Leu1826PhefsTer13	p.L1826Ffs*13	ENST00000219905	NM_001164273.1	1825	-/TT																																																																														
MITF	0	MSKCC	GRCh37	3	70008476	70008476	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014899-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			697	128	457	0	ENST00000352241.4:c.1066C>T	p.Arg356Ter	p.R356*	ENST00000352241	NM_198159.2	356	Cga/Tga																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376446	118376446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014899-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	200	410	0	ENST00000534358.1:c.9839C>T	p.Ser3280Leu	p.S3280L	ENST00000534358	NM_005933.3	3280	tCa/tTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			208	297	461	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	225	386	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112174922	112174923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTCT			P-0014945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			374	158	319	0	ENST00000257430.4:c.3633_3637dup	p.Ser1213CysfsTer54	p.S1213Cfs*54	ENST00000257430	NM_000038.5	1211	atg/aTGTCTtg																																																																														
APC	0	MSKCC	GRCh37	5	112176021	112176021	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014945-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	238	376	0	ENST00000257430.4:c.4731delA	p.Glu1577AspfsTer73	p.E1577Dfs*73	ENST00000257430	NM_000038.5	1577	gAa/ga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	222	523	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
MLL3	0	MSKCC	GRCh37	7	151902197	151902197	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs138119145		P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	48	623	0	ENST00000262189.6:c.3955G>C	p.Asp1319His	p.D1319H	ENST00000262189	NM_170606.2	1319	Gat/Cat																																																																														
BBC3	0	MSKCC	GRCh37	19	47725119	47725119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1544	125	853	0	ENST00000449228.1:c.625C>T	p.His209Tyr	p.H209Y	ENST00000449228	NM_001127240.2	209	Cat/Tat																																																																														
RB1	0	MSKCC	GRCh37	13	48919214	48919214	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	57	97	0	ENST00000267163.4:c.381-2A>G		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																															
DICER1	0	MSKCC	GRCh37	14	95577712	95577714	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	144	338	0	ENST00000343455.3:c.2196_2198del	p.Glu733del	p.E733del	ENST00000343455	NM_177438.2	732	gaAGAg/gag																																																																														
CIC	0	MSKCC	GRCh37	19	42793115	42793115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1446	231	760	0	ENST00000575354.2:c.1007G>T	p.Cys336Phe	p.C336F	ENST00000575354	NM_015125.3	336	tGt/tTt																																																																														
PRDM14	0	MSKCC	GRCh37	8	70982045	70982045	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1584	222	720	0	ENST00000276594.2:c.51C>A	p.Tyr17Ter	p.Y17*	ENST00000276594	NM_024504.3	17	taC/taA																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015063-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			90	307	472	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
ATM	0	MSKCC	GRCh37	11	108236203	108236203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015063-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	341	611	0	ENST00000278616.4:c.9139C>T	p.Arg3047Ter	p.R3047*	ENST00000278616	NM_000051.3	3047	Cga/Tga																																																																														
EP300	0	MSKCC	GRCh37	22	41564822	41564822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015063-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	312	540	0	ENST00000263253.7:c.4123G>A	p.Gly1375Ser	p.G1375S	ENST00000263253	NM_001429.3	1375	Ggc/Agc																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957471	175957471	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015063-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	264	464	0	ENST00000367669.3:c.1925A>G	p.Glu642Gly	p.E642G	ENST00000367669	NM_022457.5	642	gAa/gGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	747	495	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3831226	3831226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	168	347	0	ENST00000262367.5:c.1655C>T	p.Pro552Leu	p.P552L	ENST00000262367	NM_004380.2	552	cCg/cTg																																																																														
ATM	0	MSKCC	GRCh37	11	108224493	108224493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	159	169	0	ENST00000278616.4:c.8672G>A	p.Gly2891Asp	p.G2891D	ENST00000278616	NM_000051.3	2891	gGt/gAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087965	27087965	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	209	539	2	ENST00000324856.7:c.2251+1G>T		p.X751_splice	ENST00000324856	NM_006015.4	751																																																																															
CYSLTR2	0	MSKCC	GRCh37	13	49281502	49281502	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	175	495	0	ENST00000282018.3:c.549T>A	p.Ser183Arg	p.S183R	ENST00000282018	NM_020377.2	183	agT/agA																																																																														
IDH1	0	MSKCC	GRCh37	2	209108313	209108313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	121	344	0	ENST00000345146.2:c.536C>A	p.Ala179Asp	p.A179D	ENST00000345146	NM_005896.2	179	gCc/gAc																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185198275	185198275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	192	424	0	ENST00000265026.3:c.2757G>T	p.Gln919His	p.Q919H	ENST00000265026	NM_004721.4	919	caG/caT																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163255	32163255	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	1003	988	0	ENST00000375023.3:c.5971C>T	p.Gln1991Ter	p.Q1991*	ENST00000375023	NM_004557.3	1991	Caa/Taa																																																																														
MLL3	0	MSKCC	GRCh37	7	151879144	151879144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	1151	494	1	ENST00000262189.6:c.5801G>T	p.Arg1934Met	p.R1934M	ENST00000262189	NM_170606.2	1934	aGg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015079-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	42	1012	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015079-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			410	37	790	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100368	27100368	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015079-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	34	796	0	ENST00000324856.7:c.4081delA	p.Met1361CysfsTer120	p.M1361Cfs*120	ENST00000324856	NM_006015.4	1360	acA/ac																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	409	399	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	187	536	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459760	149459760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	85	512	0	ENST00000286301.3:c.447G>A	p.Met149Ile	p.M149I	ENST00000286301	NM_005211.3	149	atG/atA																																																																														
MPL	0	MSKCC	GRCh37	1	43814616	43814616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	272	570	0	ENST00000372470.3:c.1411C>G	p.Gln471Glu	p.Q471E	ENST00000372470	NM_005373.2	471	Caa/Gaa																																																																														
BCL10	0	MSKCC	GRCh37	1	85736468	85736468	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	103	280	0	ENST00000370580.1:c.179C>G	p.Ser60Ter	p.S60*	ENST00000370580	NM_003921.4	60	tCa/tGa																																																																														
WT1	0	MSKCC	GRCh37	11	32456273	32456273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	33	801	2	ENST00000332351.3:c.619G>A	p.Glu207Lys	p.E207K	ENST00000332351	NM_024426.4	207	Gag/Aag																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871001	12871001	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	228	349	2	ENST00000228872.4:c.228G>T	p.Trp76Cys	p.W76C	ENST00000228872	NM_004064.3	76	tgG/tgT																																																																														
MLL2	0	MSKCC	GRCh37	12	49448320	49448320	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	59	535	0	ENST00000301067.7:c.391G>T	p.Glu131Ter	p.E131*	ENST00000301067	NM_003482.3	131	Gaa/Taa																																																																														
TBX3	0	MSKCC	GRCh37	12	115109974	115109974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	41	887	0	ENST00000257566.3:c.1904G>C	p.Arg635Pro	p.R635P	ENST00000257566	NM_016569.3	635	cGc/cCc																																																																														
LATS2	0	MSKCC	GRCh37	13	21563179	21563179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	63	766	2	ENST00000382592.4:c.740C>T	p.Pro247Leu	p.P247L	ENST00000382592	NM_014572.2	247	cCg/cTg																																																																														
TSHR	0	MSKCC	GRCh37	14	81558915	81558915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	155	493	0	ENST00000298171.2:c.508A>G	p.Asn170Asp	p.N170D	ENST00000298171	NM_000369.2	170	Aat/Gat																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349862	89349862	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	51	889	0	ENST00000301030.4:c.3088G>C	p.Glu1030Gln	p.E1030Q	ENST00000301030	NM_001256183.1	1030	Gag/Cag																																																																														
SUZ12	0	MSKCC	GRCh37	17	30321692	30321692	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs137920170		P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	172	588	0	ENST00000322652.5:c.1547G>T	p.Arg516Leu	p.R516L	ENST00000322652	NM_015355.2	516	cGc/cTc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602856	10602856	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	133	819	0	ENST00000171111.5:c.722G>T	p.Cys241Phe	p.C241F	ENST00000171111	NM_203500.1	241	tGc/tTc																																																																														
CIC	0	MSKCC	GRCh37	19	42793430	42793430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144065857		P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	45	454	1	ENST00000575354.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000575354	NM_015125.3	411	gCg/gTg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965835	25965846	+	inframe_deletion	In_Frame_Del	DEL	TAGTGCCCTGCC	TAGTGCCCTGCC	-			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	176	477	0	ENST00000435504.4:c.3360_3371del	p.Met1120_Tyr1124delinsIle	p.M1120_Y1124delinsI	ENST00000435504		1120	atGGCAGGGCACTAc/atc																																																																														
EP300	0	MSKCC	GRCh37	22	41558740	41558740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	50	387	0	ENST00000263253.7:c.3685G>C	p.Glu1229Gln	p.E1229Q	ENST00000263253	NM_001429.3	1229	Gaa/Caa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89445091	89445091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	46	397	0	ENST00000336596.2:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000336596	NM_005233.5	471	Gag/Aag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467617	66467617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	98	359	0	ENST00000273854.3:c.652G>C	p.Gly218Arg	p.G218R	ENST00000273854	NM_004439.5	218	Ggt/Cgt																																																																														
TAP1	0	MSKCC	GRCh37	6	32820000	32820000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	57	558	0	ENST00000354258.4:c.910G>A	p.Val304Met	p.V304M	ENST00000354258	NM_000593.5	304	Gtg/Atg																																																																														
AGO2	0	MSKCC	GRCh37	8	141557689	141557689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	90	628	0	ENST00000220592.5:c.1626G>T	p.Met542Ile	p.M542I	ENST00000220592	NM_012154.3	542	atG/atT																																																																														
TSC1	0	MSKCC	GRCh37	9	135786395	135786395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	75	460	0	ENST00000298552.3:c.1135A>G	p.Thr379Ala	p.T379A	ENST00000298552	NM_001162426.1	379	Aca/Gca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401858	139401858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	101	647	0	ENST00000277541.6:c.3542C>T	p.Ser1181Phe	p.S1181F	ENST00000277541	NM_017617.3	1181	tCt/tTt																																																																														
TRAF2	0	MSKCC	GRCh37	9	139814797	139814797	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144427288		P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	103	641	0	ENST00000247668.2:c.790G>A	p.Ala264Thr	p.A264T	ENST00000247668	NM_021138.3	264	Gcg/Acg																																																																														
ARAF	0	MSKCC	GRCh37	X	47424249	47424249	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	71	581	0	ENST00000377045.4:c.254A>T	p.Glu85Val	p.E85V	ENST00000377045	NM_001654.4	85	gAg/gTg																																																																														
ARAF	0	MSKCC	GRCh37	X	47428972	47428972	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	61	663	0	ENST00000377045.4:c.1335C>G	p.Ile445Met	p.I445M	ENST00000377045	NM_001654.4	445	atC/atG																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223424	53223424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	47	660	0	ENST00000375401.3:c.3935G>A	p.Arg1312His	p.R1312H	ENST00000375401	NM_004187.3	1312	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	222	474	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FAT1	0	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	116	385	1	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc																																																																														
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	66	347	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	44	676	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	72	850	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	50	830	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
RAD54L	0	MSKCC	GRCh37	1	46740336	46740336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	34	810	0	ENST00000371975.4:c.1816C>T	p.Arg606Trp	p.R606W	ENST00000371975	NM_003579.3	606	Cgg/Tgg																																																																														
CTCF	0	MSKCC	GRCh37	16	67645920	67645920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	58	918	1	ENST00000264010.4:c.848G>A	p.Arg283His	p.R283H	ENST00000264010	NM_006565.3	283	cGt/cAt																																																																														
MST1R	0	MSKCC	GRCh37	3	49939859	49939859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	65	1069	2	ENST00000296474.3:c.1184G>A	p.Arg395Gln	p.R395Q	ENST00000296474	NM_002447.2	395	cGg/cAg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168654	56168655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	35	459	0	ENST00000399503.3:c.1509dup	p.Glu504ArgfsTer37	p.E504Rfs*37	ENST00000399503	NM_005921.1	503	cac/caCc																																																																														
MLL3	0	MSKCC	GRCh37	7	151853290	151853290	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	49	599	0	ENST00000262189.6:c.11812G>A	p.Val3938Ile	p.V3938I	ENST00000262189	NM_170606.2	3938	Gtt/Att																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412596	139412596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	58	741	0	ENST00000277541.6:c.1248C>G	p.Cys416Trp	p.C416W	ENST00000277541	NM_017617.3	416	tgC/tgG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	516	1002	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	212	681	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg																																																																														
MST1R	0	MSKCC	GRCh37	3	49934292	49934292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	137	877	0	ENST00000296474.3:c.2215C>T	p.Pro739Ser	p.P739S	ENST00000296474	NM_002447.2	739	Ccc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	672	972	0	ENST00000269305.4:c.644G>C	p.Ser215Thr	p.S215T	ENST00000269305	NM_001126112.2	215	aGt/aCt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1316	515	709	1	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89653849	89653859	+	frameshift_variant	Frame_Shift_Del	DEL	TATTGATGATG	TATTGATGATG	-			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	174	529	0	ENST00000371953.3:c.149_159del	p.Ile50SerfsTer9	p.I50Sfs*9	ENST00000371953	NM_000314.4	49	aaTATTGATGATGta/aata																																																																														
IRS2	0	MSKCC	GRCh37	13	110437350	110437350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	161	164	0	ENST00000375856.3:c.1051C>G	p.Pro351Ala	p.P351A	ENST00000375856	NM_003749.2	351	Ccg/Gcg																																																																														
AXIN1	0	MSKCC	GRCh37	16	396959	396959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1239	335	819	1	ENST00000262320.3:c.67C>A	p.Pro23Thr	p.P23T	ENST00000262320	NM_003502.3	23	Ccc/Acc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16042320	16042320	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	360	440	0	ENST00000268712.3:c.1352+2T>C		p.X451_splice	ENST00000268712	NM_006311.3	451																																																																															
SOS1	0	MSKCC	GRCh37	2	39249826	39249826	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	199	602	0	ENST00000402219.2:c.1743C>G	p.Asp581Glu	p.D581E	ENST00000402219	NM_005633.3	581	gaC/gaG																																																																														
EPAS1	0	MSKCC	GRCh37	2	46587864	46587864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	97	646	0	ENST00000263734.3:c.542G>A	p.Arg181His	p.R181H	ENST00000263734	NM_001430.4	181	cGt/cAt																																																																														
RASA1	0	MSKCC	GRCh37	5	86672836	86672836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	152	417	0	ENST00000274376.6:c.2323G>C	p.Asp775His	p.D775H	ENST00000274376	NM_002890.2	775	Gac/Cac																																																																														
CARD11	0	MSKCC	GRCh37	7	2953040	2953040	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141751925		P-0015099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	310	967	1	ENST00000396946.4:c.2900G>A	p.Arg967His	p.R967H	ENST00000396946	NM_032415.4	967	cGc/cAc																																																																														
PREX2	0	MSKCC	GRCh37	8	68965472	68965472	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200682883		P-0015100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	275	897	1	ENST00000288368.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000288368	NM_024870.2	362	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	204	666	0				ENST00000310581	NM_198253.2																																																																																
BCOR	0	MSKCC	GRCh37	X	39932891	39932892	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0015101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	242	604	0	ENST00000378444.4:c.1706_1707dup	p.Ala570ProfsTer20	p.A570Pfs*20	ENST00000378444	NM_001123385.1	569	-/CC																																																																														
ATRX	0	MSKCC	GRCh37	X	76937549	76937549	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	42	599	0	ENST00000373344.5:c.3199T>C	p.Ser1067Pro	p.S1067P	ENST00000373344	NM_000489.3	1067	Tca/Cca																																																																														
SPOP	0	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	228	715	0	ENST00000347630.2:c.373T>G	p.Phe125Val	p.F125V	ENST00000347630	NM_001007230.1	125	Ttt/Gtt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061247	38061247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	692	952	2	ENST00000250448.2:c.742C>A	p.Pro248Thr	p.P248T	ENST00000250448	NM_004496.3	248	Ccg/Acg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832200	72832200	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	197	645	0	ENST00000268489.5:c.4381del	p.Gln1461AsnfsTer27	p.Q1461Nfs*27	ENST00000268489	NM_006885.3	1461	Caa/aa																																																																														
EP300	0	MSKCC	GRCh37	22	41545952	41545954	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0015102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	321	1085	0	ENST00000263253.7:c.2573_2575del	p.Thr858del	p.T858del	ENST00000263253	NM_001429.3	856	gCAAca/gca																																																																														
SPOP	0	MSKCC	GRCh37	17	47696713	47696713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	143	585	0	ENST00000347630.2:c.235G>A	p.Glu79Lys	p.E79K	ENST00000347630	NM_001007230.1	79	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578445	7578445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	86	870	1	ENST00000269305.4:c.485T>G	p.Ile162Ser	p.I162S	ENST00000269305	NM_001126112.2	162	aTc/aGc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279674	123279674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	30	359	0	ENST00000358487.5:c.758C>T	p.Pro253Leu	p.P253L	ENST00000358487	NM_000141.4	253	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	326	660	1				ENST00000310581	NM_198253.2																																																																																
FAT1	0	MSKCC	GRCh37	4	187510207	187510207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	479	659	0	ENST00000441802.2:c.13306C>T	p.Pro4436Ser	p.P4436S	ENST00000441802	NM_005245.3	4436	Cct/Tct																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	945	757	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993546	72993546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	441	630	0	ENST00000268489.5:c.499C>T	p.Pro167Ser	p.P167S	ENST00000268489	NM_006885.3	167	Ccc/Tcc																																																																														
SPEN	0	MSKCC	GRCh37	1	16262739	16262739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	232	370	1	ENST00000375759.3:c.10004C>T	p.Ser3335Phe	p.S3335F	ENST00000375759	NM_015001.2	3335	tCc/tTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087940	27087940	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	590	908	2	ENST00000324856.7:c.2227C>T	p.Gln743Ter	p.Q743*	ENST00000324856	NM_006015.4	743	Caa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097754	27097754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	407	734	3	ENST00000324856.7:c.3343C>T	p.Pro1115Ser	p.P1115S	ENST00000324856	NM_006015.4	1115	Cca/Tca																																																																														
NUF2	0	MSKCC	GRCh37	1	163295954	163295954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	300	908	1	ENST00000271452.3:c.113C>T	p.Pro38Leu	p.P38L	ENST00000271452	NM_145697.2	38	cCa/cTa																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64129437	64129438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	517	933	0	ENST00000334205.4:c.874dup	p.Ala292GlyfsTer78	p.A292Gfs*78	ENST00000334205	NM_003942.2	290	cag/caGg																																																																														
MLL2	0	MSKCC	GRCh37	12	49434445	49434445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	552	918	1	ENST00000301067.7:c.7108C>T	p.Arg2370Cys	p.R2370C	ENST00000301067	NM_003482.3	2370	Cgc/Tgc																																																																														
TSC2	0	MSKCC	GRCh37	16	2134653	2134653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	552	869	0	ENST00000219476.3:c.4430G>A	p.Arg1477Lys	p.R1477K	ENST00000219476	NM_000548.3	1477	aGg/aAg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031873	10031873	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	344	624	0	ENST00000330684.3:c.950A>C	p.Lys317Thr	p.K317T	ENST00000330684	NM_001134407.1	317	aAg/aCg																																																																														
CTCF	0	MSKCC	GRCh37	16	67662307	67662308	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	299	572	0	ENST00000264010.4:c.1553_1554delCCinsTT	p.Thr518Ile	p.T518I	ENST00000264010	NM_006565.3	518	aCC/aTT																																																																														
BRD4	0	MSKCC	GRCh37	19	15350791	15350791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	735	919	1	ENST00000263377.2:c.3212C>T	p.Pro1071Leu	p.P1071L	ENST00000263377	NM_058243.2	1071	cCc/cTc																																																																														
MLL4	0	MSKCC	GRCh37	19	36218158	36218158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	264	467	1	ENST00000222270.7:c.4105G>A	p.Glu1369Lys	p.E1369K	ENST00000222270	NM_014727.1	1369	Gag/Aag																																																																														
MYCN	0	MSKCC	GRCh37	2	16082336	16082336	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	517	1037	0	ENST00000281043.3:c.150G>A	p.Trp50Ter	p.W50*	ENST00000281043	NM_005378.4	50	tgG/tgA																																																																														
MSH6	0	MSKCC	GRCh37	2	48025939	48025939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	328	528	0	ENST00000234420.5:c.817G>A	p.Gly273Arg	p.G273R	ENST00000234420	NM_000179.2	273	Gga/Aga																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111881510	111881510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	400	630	0	ENST00000393256.3:c.188C>T	p.Pro63Leu	p.P63L	ENST00000393256	NM_006538.4	63	cCg/cTg																																																																														
EP300	0	MSKCC	GRCh37	22	41521946	41521946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	476	891	1	ENST00000263253.7:c.808C>T	p.Leu270Phe	p.L270F	ENST00000263253	NM_001429.3	270	Ctt/Ttt																																																																														
TERT	0	MSKCC	GRCh37	5	1293799	1293799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	537	954	3	ENST00000310581.5:c.1202C>T	p.Ala401Val	p.A401V	ENST00000310581	NM_198253.2	401	gCg/gTg																																																																														
MDC1	0	MSKCC	GRCh37	6	30673271	30673271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1204	454	653	0	ENST00000376406.3:c.3689G>A	p.Gly1230Glu	p.G1230E	ENST00000376406	NM_014641.2	1230	gGa/gAa																																																																														
SESN1	0	MSKCC	GRCh37	6	109311846	109311846	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	332	715	0	ENST00000436639.2:c.1424+2T>C		p.X475_splice	ENST00000436639	NM_014454.2	475																																																																															
IKZF1	0	MSKCC	GRCh37	7	50467934	50467934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	324	517	2	ENST00000331340.3:c.1169C>T	p.Pro390Leu	p.P390L	ENST00000331340	NM_006060.4	390	cCg/cTg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964488	70964488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	510	879	2	ENST00000276594.2:c.1540G>A	p.Glu514Lys	p.E514K	ENST00000276594	NM_024504.3	514	Gag/Aag																																																																														
SYK	0	MSKCC	GRCh37	9	93650802	93650802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	40	499	0	ENST00000375746.1:c.1728G>A	p.Met576Ile	p.M576I	ENST00000375746	NM_001174167.1	576	atG/atA																																																																														
BAP1	0	MSKCC	GRCh37	3	52437669	52437669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	299	977	0	ENST00000460680.1:c.1492G>A	p.Glu498Lys	p.E498K	ENST00000460680	NM_004656.3	498	Gag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16257229	16257229	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	171	946	0	ENST00000375759.3:c.4494G>C	p.Lys1498Asn	p.K1498N	ENST00000375759	NM_015001.2	1498	aaG/aaC																																																																														
MLL2	0	MSKCC	GRCh37	12	49427906	49427906	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	310	1065	0	ENST00000301067.7:c.10684G>T	p.Glu3562Ter	p.E3562*	ENST00000301067	NM_003482.3	3562	Gag/Tag																																																																														
MLL2	0	MSKCC	GRCh37	12	49441789	49441789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	344	1085	3	ENST00000301067.7:c.4195C>T	p.Gln1399Ter	p.Q1399*	ENST00000301067	NM_003482.3	1399	Cag/Tag																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715959	52715959	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	179	840	0	ENST00000322088.6:c.524C>G	p.Ser175Ter	p.S175*	ENST00000322088	NM_014225.5	175	tCa/tGa																																																																														
BAP1	0	MSKCC	GRCh37	3	52436815	52436815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	310	1116	0	ENST00000460680.1:c.1963G>C	p.Glu655Gln	p.E655Q	ENST00000460680	NM_004656.3	655	Gag/Cag																																																																														
BAP1	0	MSKCC	GRCh37	3	52437169	52437171	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	TA			P-0015107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	224	1031	1	ENST00000460680.1:c.1873_1875delinsTA	p.Glu625Ter	p.E625*	ENST00000460680	NM_004656.3	625	GAG/TA																																																																														
FAT1	0	MSKCC	GRCh37	4	187549788	187549788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	182	774	0	ENST00000441802.2:c.4453G>A	p.Glu1485Lys	p.E1485K	ENST00000441802	NM_005245.3	1485	Gag/Aag																																																																														
TAP1	0	MSKCC	GRCh37	6	32818230	32818230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147332077		P-0015107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	296	1024	0	ENST00000354258.4:c.1295C>T	p.Ser432Leu	p.S432L	ENST00000354258	NM_000593.5	432	tCg/tTg																																																																														
TEK	0	MSKCC	GRCh37	9	27169582	27169582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	318	1176	1	ENST00000380036.4:c.583G>A	p.Gly195Arg	p.G195R	ENST00000380036	NM_000459.3	195	Gga/Aga																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413166	139413166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	878	1366	2	ENST00000277541.6:c.976G>A	p.Gly326Ser	p.G326S	ENST00000277541	NM_017617.3	326	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	150	1020	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577501	7577501	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0015108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	123	945	1	ENST00000269305.4:c.780del	p.Ser261ValfsTer84	p.S261Vfs*84	ENST00000269305	NM_001126112.2	260	tcC/tc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016558	12016558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	64	601	1	ENST00000353533.5:c.694C>T	p.Pro232Ser	p.P232S	ENST00000353533	NM_003010.3	232	Cct/Tct																																																																														
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	649	902	1	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
ATRX	0	MSKCC	GRCh37	X	76875920	76875920	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	440	442	1	ENST00000373344.5:c.5215C>T	p.Arg1739Ter	p.R1739*	ENST00000373344	NM_000489.3	1739	Cga/Tga																																																																														
ATM	0	MSKCC	GRCh37	11	108114801	108114810	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCAAATTT	TTCCAAATTT	-			P-0015110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	321	821	0	ENST00000278616.4:c.620_629del	p.Ser207TrpfsTer20	p.S207Wfs*20	ENST00000278616	NM_000051.3	206	aaTTCCAAATTT/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	89	895	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	149	953	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
RBM10	0	MSKCC	GRCh37	X	47044550	47044550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	217	1273	1	ENST00000329236.7:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000329236	NM_001204466.1	605	Gag/Tag																																																																														
FAT1	0	MSKCC	GRCh37	4	187560904	187560904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	128	686	1	ENST00000441802.2:c.3614G>A	p.Arg1205Gln	p.R1205Q	ENST00000441802	NM_005245.3	1205	cGa/cAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47163617	47163618	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAT			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	87	599	0	ENST00000409792.3:c.2505_2508dup	p.Asp837MetfsTer2	p.D837Mfs*2	ENST00000409792	NM_014159.6	836	-/ATGT																																																																														
SETD2	0	MSKCC	GRCh37	3	47165333	47165333	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	78	518	0	ENST00000409792.3:c.793del	p.Glu265AsnfsTer3	p.E265Nfs*3	ENST00000409792	NM_014159.6	265	Gaa/aa																																																																														
FAT1	2195	MSKCC	GRCh37	4	187524631	187524631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	182	1061	2	ENST00000441802.2:c.11049G>T	p.Leu3683Phe	p.L3683F	ENST00000441802	NM_005245.3	3683	ttG/ttT																																																																														
FAT1	0	MSKCC	GRCh37	4	187535442	187535442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	99	645	0	ENST00000441802.2:c.9132G>C	p.Gln3044His	p.Q3044H	ENST00000441802	NM_005245.3	3044	caG/caC																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120456	94120456	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	116	710	0	ENST00000369303.4:c.595A>G	p.Lys199Glu	p.K199E	ENST00000369303	NM_004440.3	199	Aaa/Gaa																																																																														
MED12	0	MSKCC	GRCh37	X	70356438	70356438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	167	1172	1	ENST00000374080.3:c.5333G>T	p.Ser1778Ile	p.S1778I	ENST00000374080		1778	aGt/aTt																																																																														
FGF4	0	MSKCC	GRCh37	11	69589765	69589765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	29	290	2	ENST00000168712.1:c.88G>A	p.Ala30Thr	p.A30T	ENST00000168712	NM_002007.2	30	Gcc/Acc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	241	1166	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99434793	99434793	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201529410		P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	183	990	1	ENST00000268035.6:c.880G>A	p.Glu294Lys	p.E294K	ENST00000268035	NM_000875.3	294	Gag/Aag																																																																														
SOX9	0	MSKCC	GRCh37	17	70119873	70119874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	115	1558	0	ENST00000245479.2:c.876dup	p.Glu293ArgfsTer3	p.E293Rfs*3	ENST00000245479	NM_000346.3	292	aac/aaCc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223032	5223032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	226	1403	1	ENST00000357368.4:c.2771C>T	p.Pro924Leu	p.P924L	ENST00000357368	NM_002850.3	924	cCg/cTg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25459802	25459802	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	200	1028	0	ENST00000264709.3:c.2478+3C>T		p.X826_splice	ENST00000264709	NM_175629.2	826																																																																															
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	42	607	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
SMO	0	MSKCC	GRCh37	7	128852242	128852242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140172891		P-0015114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	115	1582	1	ENST00000249373.3:c.2314C>T	p.Arg772Cys	p.R772C	ENST00000249373	NM_005631.4	772	Cgc/Tgc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589607	67589609	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0015115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	215	611	0	ENST00000274335.5:c.1372_1374del	p.Glu458del	p.E458del	ENST00000274335		457	cAAGaa/caa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0015115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	112	615	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	185	1332	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105565	27105565	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	139	833	0	ENST00000324856.7:c.5176G>T	p.Glu1726Ter	p.E1726*	ENST00000324856	NM_006015.4	1726	Gag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89692929	89692929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	199	1012	0	ENST00000371953.3:c.413A>G	p.Tyr138Cys	p.Y138C	ENST00000371953	NM_000314.4	138	tAt/tGt																																																																														
MTOR	0	MSKCC	GRCh37	1	11174411	11174411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	217	1245	0	ENST00000361445.4:c.7264G>C	p.Val2422Leu	p.V2422L	ENST00000361445	NM_004958.3	2422	Gtc/Ctc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720754	89720755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	16	358	0	ENST00000371953.3:c.906dup	p.Ile303HisfsTer9	p.I303Hfs*9	ENST00000371953	NM_000314.4	302	agc/agCc																																																																														
CTCF	0	MSKCC	GRCh37	16	67662278	67662289	+	frameshift_variant	Frame_Shift_Del	DEL	GCACATGATCAT	GCACATGATCAT	AG			P-0015115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	61	659	2	ENST00000264010.4:c.1524_1535delinsAG	p.His509GlyfsTer72	p.H509Gfs*72	ENST00000264010	NM_006565.3	508	agGCACATGATCATg/agAGg																																																																														
MITF	0	MSKCC	GRCh37	3	70008485	70008485	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	221	990	0	ENST00000352241.4:c.1075C>T	p.Gln359Ter	p.Q359*	ENST00000352241	NM_198159.2	359	Caa/Taa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402522	139402522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	131	1235	3	ENST00000277541.6:c.3395G>A	p.Arg1132His	p.R1132H	ENST00000277541	NM_017617.3	1132	cGc/cAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015116-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			849	48	676	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	358	428	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	291	297	0	ENST00000335508.6:c.1873C>G	p.Arg625Gly	p.R625G	ENST00000335508	NM_012433.2	625	Cgt/Ggt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	20	386	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	92	326	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	154	367	1	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	334	510	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	14	296	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
RB1	0	MSKCC	GRCh37	13	48951053	48951053	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	83	167	0	ENST00000267163.4:c.1216-1G>A		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																															
HIST1H3H	0	MSKCC	GRCh37	6	27777978	27777978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	44	219	0	ENST00000369163.2:c.127C>T	p.Arg43Trp	p.R43W	ENST00000369163	NM_003536.2	43	Cgg/Tgg																																																																														
CDK12	0	MSKCC	GRCh37	17	37618717	37618738	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAAGCCAAGAAGTCTCCAGC	AAAAAGCCAAGAAGTCTCCAGC	-			P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	166	439	0	ENST00000447079.4:c.395_416del	p.Lys132SerfsTer5	p.K132Sfs*5	ENST00000447079	NM_015083.1	131	gaAAAAAGCCAAGAAGTCTCCAGC/ga																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867041	45867042	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	92	434	0	ENST00000391945.4:c.1077dup	p.Gly360ArgfsTer18	p.G360Rfs*18	ENST00000391945	NM_000400.3	359	-/C																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25464485	25464510	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCACCATGCCCACCGTGATGGAGT	CCGCACCATGCCCACCGTGATGGAGT	-			P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	119	433	0	ENST00000264709.3:c.2003_2028del	p.Asp668AlafsTer36	p.D668Afs*36	ENST00000264709	NM_175629.2	668	gACTCCATCACGGTGGGCATGGTGCGG/g																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138433543	138433543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	123	328	0	ENST00000289153.2:c.1069C>G	p.Leu357Val	p.L357V	ENST00000289153	NM_006219.2	357	Ctt/Gtt																																																																														
FLT4	0	MSKCC	GRCh37	5	180047888	180047888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	246	629	2	ENST00000261937.6:c.2287G>A	p.Val763Met	p.V763M	ENST00000261937	NM_182925.4	763	Gtg/Atg																																																																														
PNRC1	0	MSKCC	GRCh37	6	89790803	89790803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	169	567	0	ENST00000336032.3:c.190G>C	p.Asp64His	p.D64H	ENST00000336032	NM_006813.2	64	Gat/Cat																																																																														
DUSP4	0	MSKCC	GRCh37	8	29194826	29194826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	214	655	0	ENST00000240100.2:c.902T>C	p.Val301Ala	p.V301A	ENST00000240100	NM_001394.6	301	gTg/gCg																																																																														
PREX2	0	MSKCC	GRCh37	8	68992683	68992683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	92	422	0	ENST00000288368.4:c.1648G>C	p.Glu550Gln	p.E550Q	ENST00000288368	NM_024870.2	550	Gaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0015120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	129	490	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	207	515	0	ENST00000269305.4:c.712T>G	p.Cys238Gly	p.C238G	ENST00000269305	NM_001126112.2	238	Tgt/Ggt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575054	48575054	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	106	301	0	ENST00000342988.3:c.250-2A>G		p.X84_splice	ENST00000342988	NM_005359.5	84																																																																															
EPHA5	0	MSKCC	GRCh37	4	66467972	66467972	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	98	315	0	ENST00000273854.3:c.297C>G	p.Tyr99Ter	p.Y99*	ENST00000273854	NM_004439.5	99	taC/taG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	307	486	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	157	756	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7579521	7579521	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	390	737	0	ENST00000269305.4:c.166delG	p.Glu56LysfsTer67	p.E56Kfs*67	ENST00000269305	NM_001126112.2	56	Gaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0015121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	138	254	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50455082	50455082	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	236	390	0	ENST00000331340.3:c.629A>G	p.Tyr210Cys	p.Y210C	ENST00000331340	NM_006060.4	210	tAt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	121	439	0				ENST00000310581	NM_198253.2																																																																																
ERBB3	0	MSKCC	GRCh37	12	56481806	56481806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	438	442	0	ENST00000267101.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000267101	NM_001982.3	245	gCc/gTc																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873721	35873721	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	217	494	0	ENST00000216797.5:c.130C>T	p.Gln44Ter	p.Q44*	ENST00000216797	NM_020529.2	44	Cag/Tag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943712	9943712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	185	470	0	ENST00000330684.3:c.1229C>T	p.Thr410Ile	p.T410I	ENST00000330684	NM_001134407.1	410	aCc/aTc																																																																														
PALB2	0	MSKCC	GRCh37	16	23647182	23647182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	214	500	1	ENST00000261584.4:c.685C>T	p.Pro229Ser	p.P229S	ENST00000261584	NM_024675.3	229	Cca/Tca																																																																														
NCOR1	0	MSKCC	GRCh37	17	15942924	15942924	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	198	369	0	ENST00000268712.3:c.6778A>T	p.Asn2260Tyr	p.N2260Y	ENST00000268712	NM_006311.3	2260	Aat/Tat																																																																														
ALK	0	MSKCC	GRCh37	2	29420436	29420436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	190	447	0	ENST00000389048.3:c.4045G>A	p.Asp1349Asn	p.D1349N	ENST00000389048	NM_004304.4	1349	Gac/Aac																																																																														
PLK2	0	MSKCC	GRCh37	5	57752817	57752817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	310	257	0	ENST00000274289.3:c.1111C>T	p.Leu371Phe	p.L371F	ENST00000274289	NM_006622.3	371	Ctt/Ttt																																																																														
PREX2	0	MSKCC	GRCh37	8	68956765	68956765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	270	520	0	ENST00000288368.4:c.883C>T	p.Leu295Phe	p.L295F	ENST00000288368	NM_024870.2	295	Ctt/Ttt																																																																														
PREX2	0	MSKCC	GRCh37	8	69005858	69005858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	148	343	0	ENST00000288368.4:c.2269G>A	p.Val757Ile	p.V757I	ENST00000288368	NM_024870.2	757	Gtt/Att																																																																														
JAK2	0	MSKCC	GRCh37	9	5054712	5054712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	112	306	0	ENST00000381652.3:c.764T>C	p.Leu255Pro	p.L255P	ENST00000381652	NM_004972.3	255	cTt/cCt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453133	140453136	+	missense_variant	Missense_Mutation	ONP	TTCA	TTCA	ATTT			P-0015122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	245	377	1	ENST00000288602.6:c.1799_1802delinsAAAT	p.Val600_Lys601delinsGluIle	p.V600_K601delinsEI	ENST00000288602	NM_004333.4	600	gTGAAa/gAAATa																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	123	545	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0015123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	118	514	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SOX17	0	MSKCC	GRCh37	8	55372033	55372033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	129	579	0	ENST00000297316.4:c.723G>A	p.Met241Ile	p.M241I	ENST00000297316	NM_022454.3	241	atG/atA																																																																														
MLH1	0	MSKCC	GRCh37	3	37048502	37048502	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	263	412	0	ENST00000231790.2:c.401A>T	p.Lys134Ile	p.K134I	ENST00000231790	NM_000249.3	134	aAa/aTa																																																																														
ABL1	0	MSKCC	GRCh37	9	133760928	133760928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	524	700	6	ENST00000318560.5:c.3251G>A	p.Arg1084Gln	p.R1084Q	ENST00000318560	NM_005157.4	1084	cGa/cAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	371	437	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	487	602	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
JAK1	0	MSKCC	GRCh37	1	65312338	65312338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	392	462	0	ENST00000342505.4:c.1981G>T	p.Val661Leu	p.V661L	ENST00000342505	NM_002227.2	661	Gtg/Ttg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0015129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	760	480	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0015129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	183	623	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	71	682	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	101	398	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25505471	25505471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	45	477	0	ENST00000264709.3:c.287G>A	p.Arg96Gln	p.R96Q	ENST00000264709	NM_175629.2	96	cGg/cAg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	65	496	1	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																																																														
TET1	0	MSKCC	GRCh37	10	70332357	70332357	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	46	491	1	ENST00000373644.4:c.262G>C	p.Glu88Gln	p.E88Q	ENST00000373644	NM_030625.2	88	Gag/Cag																																																																														
PMS2	0	MSKCC	GRCh37	7	6048636	6048636	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	28	443	0	ENST00000265849.7:c.15G>C	p.Glu5Asp	p.E5D	ENST00000265849	NM_000535.5	5	gaG/gaC																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856116	111856116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	99	449	0	ENST00000341259.2:c.167C>T	p.Ala56Val	p.A56V	ENST00000341259	NM_005475.2	56	gCg/gTg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37856477	37856510	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	GCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGT	GCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGT	-			P-0015131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	34	255	0	ENST00000269571.5:c.-10_24delAGTGAGCACCATGGAGCTGGCGGCCTTGTGCCGC		p.*4fs*	ENST00000269571		4																																																																															
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	48	403	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89685298	89685299	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0015132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	19	262	0	ENST00000371953.3:c.194dup	p.Tyr65Ter	p.Y65*	ENST00000371953	NM_000314.4	65	tac/tAac																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913718	32913723	+	inframe_deletion	In_Frame_Del	DEL	CAGTAG	CAGTAG	-			P-0015132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	17	435	0	ENST00000380152.3:c.5228_5233del	p.Ser1743_Ser1744del	p.S1743_S1744del	ENST00000380152		1742	aaCAGTAGc/aac																																																																														
PRKD1	0	MSKCC	GRCh37	14	30194784	30194784	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	61	576	2	ENST00000331968.5:c.361A>G	p.Ser121Gly	p.S121G	ENST00000331968	NM_002742.2	121	Agt/Ggt																																																																														
FAT1	0	MSKCC	GRCh37	4	187532726	187532726	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	66	381	0	ENST00000441802.2:c.9667A>C	p.Ile3223Leu	p.I3223L	ENST00000441802	NM_005245.3	3223	Ata/Cta																																																																														
RB1	0	MSKCC	GRCh37	13	48923117	48923117	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	71	317	0	ENST00000267163.4:c.566del	p.Leu189TrpfsTer3	p.L189Wfs*3	ENST00000267163	NM_000321.2	189	Ttg/tg																																																																														
RB1	0	MSKCC	GRCh37	13	48923126	48923126	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	75	331	0	ENST00000267163.4:c.574A>G	p.Lys192Glu	p.K192E	ENST00000267163	NM_000321.2	192	Aaa/Gaa																																																																														
PALB2	0	MSKCC	GRCh37	16	23641575	23641575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	47	546	0	ENST00000261584.4:c.1900C>T	p.Pro634Ser	p.P634S	ENST00000261584	NM_024675.3	634	Cca/Tca																																																																														
ERF	0	MSKCC	GRCh37	19	42752996	42752996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	90	607	0	ENST00000222329.4:c.1268C>T	p.Pro423Leu	p.P423L	ENST00000222329	NM_006494.2	423	cCa/cTa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38971990	38971990	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	20	458	0	ENST00000357387.3:c.961A>G	p.Met321Val	p.M321V	ENST00000357387	NM_152756.3	321	Atg/Gtg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0015135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	46	303	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589607	67589609	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0015135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	80	304	0	ENST00000274335.5:c.1372_1374del	p.Glu458del	p.E458del	ENST00000274335		457	cAAGaa/caa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692980	89692980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	101	393	0	ENST00000371953.3:c.464A>G	p.Tyr155Cys	p.Y155C	ENST00000371953	NM_000314.4	155	tAt/tGt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458255	120458256	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0015135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	58	515	0	ENST00000256646.2:c.7088_7089dup	p.Gln2364GlyfsTer3	p.Q2364Gfs*3	ENST00000256646	NM_024408.3	2363	-/GG																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139418337	139418337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	201	679	0	ENST00000277541.6:c.235C>T	p.Arg79Cys	p.R79C	ENST00000277541	NM_017617.3	79	Cgc/Tgc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	23	202	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
POLE	0	MSKCC	GRCh37	12	133210907	133210907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	156	509	0	ENST00000320574.5:c.5869G>A	p.Glu1957Lys	p.E1957K	ENST00000320574	NM_006231.2	1957	Gag/Aag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922341	178922341	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	132	431	0	ENST00000263967.3:c.1110T>G	p.Asn370Lys	p.N370K	ENST00000263967	NM_006218.2	370	aaT/aaG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	174	369	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	710	581	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	169	485	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89712016	89712019	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTA	AGTA	-			P-0015139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	31	148	0	ENST00000371953.3:c.634+3_634+6delAAGT		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67591038	67591038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	73	243	0	ENST00000274335.5:c.1631G>A	p.Arg544Lys	p.R544K	ENST00000274335		544	aGa/aAa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176519390	176519390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	329	461	1	ENST00000292408.4:c.796G>A	p.Asp266Asn	p.D266N	ENST00000292408	NM_213647.1	266	Gac/Aac																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509930	106509930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	76	423	0	ENST00000359195.3:c.1924G>C	p.Ala642Pro	p.A642P	ENST00000359195	NM_002649.2	642	Gcc/Ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	157	412	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	88	249	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	301	445	1	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																														
SETD2	0	MSKCC	GRCh37	3	47164721	47164721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	201	310	0	ENST00000409792.3:c.1405T>C	p.Tyr469His	p.Y469H	ENST00000409792	NM_014159.6	469	Tac/Cac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11105622	11105622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	105	606	0	ENST00000344626.4:c.1538G>A	p.Arg513Gln	p.R513Q	ENST00000344626	NM_003072.3	513	cGg/cAg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45868176	45868176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140175332		P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	396	643	0	ENST00000391945.4:c.514G>A	p.Ala172Thr	p.A172T	ENST00000391945	NM_000400.3	172	Gct/Act																																																																														
FLCN	0	MSKCC	GRCh37	17	17119796	17119796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	348	555	0	ENST00000285071.4:c.1198G>A	p.Val400Ile	p.V400I	ENST00000285071	NM_144997.5	400	Gtc/Atc																																																																														
MED12	0	MSKCC	GRCh37	X	70351950	70351950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	216	551	2	ENST00000374080.3:c.4147G>A	p.Ala1383Thr	p.A1383T	ENST00000374080		1383	Gcc/Acc																																																																														
MTOR	0	MSKCC	GRCh37	1	11187173	11187173	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	312	446	0	ENST00000361445.4:c.6245A>T	p.Gln2082Leu	p.Q2082L	ENST00000361445	NM_004958.3	2082	cAa/cTa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120465301	120465301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	240	309	14	ENST00000256646.2:c.4960G>A	p.Ala1654Thr	p.A1654T	ENST00000256646	NM_024408.3	1654	Gcc/Acc																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88681327	88681327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	159	253	1	ENST00000372037.3:c.1217G>A	p.Arg406His	p.R406H	ENST00000372037	NM_004329.2	406	cGc/cAc																																																																														
MEN1	0	MSKCC	GRCh37	11	64573165	64573165	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	343	477	0	ENST00000337652.1:c.1142T>C	p.Leu381Pro	p.L381P	ENST00000337652	NM_130803.2	381	cTg/cCg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3799632	3799632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	249	401	1	ENST00000262367.5:c.3832G>A	p.Glu1278Lys	p.E1278K	ENST00000262367	NM_004380.2	1278	Gaa/Aaa																																																																														
MSH6	0	MSKCC	GRCh37	2	48010455	48010455	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	285	418	0	ENST00000234420.5:c.83C>A	p.Ser28Ter	p.S28*	ENST00000234420	NM_000179.2	28	tCa/tAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47125245	47125245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	263	314	0	ENST00000409792.3:c.6025G>C	p.Ala2009Pro	p.A2009P	ENST00000409792	NM_014159.6	2009	Gcc/Ccc																																																																														
DAXX	0	MSKCC	GRCh37	6	33287859	33287859	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	381	457	0	ENST00000374542.5:c.1394del	p.Glu465GlyfsTer63	p.E465Gfs*63	ENST00000374542	NM_001141970.1	465	gAg/gg																																																																														
PTP4A1	0	MSKCC	GRCh37	6	64289969	64289969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	211	302	0	ENST00000370651.3:c.412C>T	p.Arg138Cys	p.R138C	ENST00000370651	NM_003463.4	138	Cgt/Tgt																																																																														
RXRA	0	MSKCC	GRCh37	9	137300845	137300845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	129	600	3	ENST00000481739.1:c.490C>T	p.Arg164Cys	p.R164C	ENST00000481739	NM_002957.4	164	Cgc/Tgc																																																																														
SDHA	0	MSKCC	GRCh37	5	233732	233734	+	missense_variant	Missense_Mutation	ONP	TCC	TCC	CCG			P-0015140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	135	395	0	ENST00000264932.6:c.1036_1038delinsCCG	p.Ser346Pro	p.S346P	ENST00000264932	NM_004168.2	346	TCC/CCG																																																																														
MET	0	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	1007	599	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
NEGR1	0	MSKCC	GRCh37	1	72076745	72076745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	140	459	0	ENST00000357731.5:c.752C>A	p.Pro251Gln	p.P251Q	ENST00000357731	NM_173808.2	251	cCg/cAg																																																																														
ALK	0	MSKCC	GRCh37	2	29449929	29449929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	193	779	1	ENST00000389048.3:c.2926C>A	p.His976Asn	p.H976N	ENST00000389048	NM_004304.4	976	Cac/Aac																																																																														
PTPRT	0	MSKCC	GRCh37	20	40757400	40757400	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	113	535	0	ENST00000373198.4:c.2898C>G	p.Tyr966Ter	p.Y966*	ENST00000373198	NM_133170.3	966	taC/taG																																																																														
PREX2	0	MSKCC	GRCh37	8	69032495	69032506	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTCACTCCAG	ATCTCACTCCAG	T			P-0015141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	89	572	0	ENST00000288368.4:c.3569_3580delinsT	p.Tyr1190LeufsTer48	p.Y1190Lfs*48	ENST00000288368	NM_024870.2	1190	tATCTCACTCCAGgc/tTgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	35	397	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	253260	MSKCC	GRCh37	5	38945092	38945092	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs769767383		P-0015142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	19	387	0	ENST00000357387.3:c.4712C>T	p.Ser1571Leu	p.S1571L	ENST00000357387	NM_152756.3	1571	tCg/tTg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156844777	156844777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56320207		P-0015142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	32	426	2	ENST00000524377.1:c.1331G>A	p.Arg444Gln	p.R444Q	ENST00000524377	NM_002529.3	444	cGg/cAg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412380	139412381	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	34	392	2	ENST00000277541.6:c.1264_1265delinsTT	p.Pro422Phe	p.P422F	ENST00000277541	NM_017617.3	422	CCc/TTc																																																																														
YES1	0	MSKCC	GRCh37	18	756572	756572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	17	366	0	ENST00000314574.4:c.256C>T	p.Pro86Ser	p.P86S	ENST00000314574	NM_005433.3	86	Cct/Tct																																																																														
AXL	0	MSKCC	GRCh37	19	41758315	41758315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	39	542	0	ENST00000301178.4:c.1771G>A	p.Glu591Lys	p.E591K	ENST00000301178	NM_021913.4	591	Gaa/Aaa																																																																														
KIT	0	MSKCC	GRCh37	4	55573281	55573281	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	10	274	0	ENST00000288135.5:c.943A>G	p.Ile315Val	p.I315V	ENST00000288135	NM_000222.2	315	Atc/Gtc																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032191	26032207	+	frameshift_variant	Frame_Shift_Del	DEL	GTAGCCGGCGCGCTCTT	GTAGCCGGCGCGCTCTT	-			P-0015142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	18	148	0	ENST00000244661.2:c.82_98del	p.Lys28ArgfsTer65	p.K28Rfs*65	ENST00000244661	NM_003537.3	28	AAGAGCGCGCCGGCTACc/c																																																																														
BRAF	0	MSKCC	GRCh37	7	140477843	140477853	+	protein_altering_variant	In_Frame_Del	DEL	CTGTCACATTC	CTGTCACATTC	AG			P-0015142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	85	425	2	ENST00000288602.6:c.1455_1465delinsCT	p.Leu485_Ala489delinsPheSer	p.L485_A489delinsFS	ENST00000288602	NM_004333.4	485	ttGAATGTGACAGca/ttCTca																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	127	255	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
ATM	0	MSKCC	GRCh37	11	108218084	108218084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	233	280	0	ENST00000278616.4:c.8663T>C	p.Ile2888Thr	p.I2888T	ENST00000278616	NM_000051.3	2888	aTa/aCa																																																																														
KIT	0	MSKCC	GRCh37	4	55593603	55593614	+	inframe_deletion	In_Frame_Del	DEL	TGGAAGGTTGTT	TGGAAGGTTGTT	-			P-0015145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	219	312	0	ENST00000288135.5:c.1669_1680del	p.Trp557_Val560del	p.W557_V560del	ENST00000288135	NM_000222.2	557	TGGAAGGTTGTT/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0015148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	472	424	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056206	26056206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	370	321	0	ENST00000343677.2:c.451G>A	p.Ala151Thr	p.A151T	ENST00000343677	NM_005319.3	151	Gct/Act																																																																														
DDR2	0	MSKCC	GRCh37	1	162745476	162745476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	255	285	0	ENST00000367921.3:c.1891C>G	p.Arg631Gly	p.R631G	ENST00000367921	NM_006182.2	631	Cgg/Ggg																																																																														
CBL	0	MSKCC	GRCh37	11	119146812	119146812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	287	392	0	ENST00000264033.4:c.975C>G	p.Phe325Leu	p.F325L	ENST00000264033	NM_005188.3	325	ttC/ttG																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	231	329	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	417	315	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022250	31022250	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	201	248	0	ENST00000375687.4:c.1735A>T	p.Ile579Phe	p.I579F	ENST00000375687	NM_015338.5	579	Atc/Ttc																																																																														
RBM10	0	MSKCC	GRCh37	X	47041680	47041680	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	602	546	0	ENST00000329236.7:c.1671G>C	p.Glu557Asp	p.E557D	ENST00000329236	NM_001204466.1	557	gaG/gaC																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015152-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	399	512	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RAD50	0	MSKCC	GRCh37	5	131977984	131977984	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015152-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	222	410	0	ENST00000265335.6:c.3867T>G	p.Ile1289Met	p.I1289M	ENST00000265335		1289	atT/atG																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604716	48604716	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	38	366	0	ENST00000342988.3:c.1538A>G	p.Tyr513Cys	p.Y513C	ENST00000342988	NM_005359.5	513	tAc/tGc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061212	38061235	+	inframe_deletion	In_Frame_Del	DEL	GTAGCAGCCGTTCTCGAACATGTT	GTAGCAGCCGTTCTCGAACATGTT	-			P-0015155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	89	388	0	ENST00000250448.2:c.754_777del	p.Asn252_Tyr259del	p.N252_Y259del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGCTAC/-																																																																														
SOX9	0	MSKCC	GRCh37	17	70117784	70117784	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	54	431	0	ENST00000245479.2:c.252C>G	p.Tyr84Ter	p.Y84*	ENST00000245479	NM_000346.3	84	taC/taG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	151	563	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	118	825	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0015175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	66	389	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0015175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	66	389	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591895	48591895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	78	520	0	ENST00000342988.3:c.1058A>G	p.Tyr353Cys	p.Y353C	ENST00000342988	NM_005359.5	353	tAc/tGc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0015175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	15	129	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073616	8073616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	41	360	0	ENST00000377482.5:c.1043C>T	p.Pro348Leu	p.P348L	ENST00000377482	NM_018948.3	348	cCg/cTg																																																																														
MAPK3	0	MSKCC	GRCh37	16	30128299	30128299	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	93	788	0	ENST00000263025.4:c.933A>C	p.Leu311Phe	p.L311F	ENST00000263025	NM_002746.2	311	ttA/ttC																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554725	63554725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	57	378	0	ENST00000307078.5:c.14T>C	p.Met5Thr	p.M5T	ENST00000307078	NM_004655.3	5	aTg/aCg																																																																														
CARM1	0	MSKCC	GRCh37	19	11015679	11015679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	96	573	1	ENST00000327064.4:c.273C>A	p.Ser91Arg	p.S91R	ENST00000327064	NM_199141.1	91	agC/agA																																																																														
PBRM1	0	MSKCC	GRCh37	3	52692207	52692218	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCACTTACCACT	TCACTTACCACT	-			P-0015176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	55	342	0	ENST00000394830.3:c.642_645+8del		p.X214_splice	ENST00000394830	NM_018313.4	214																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	183	434	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266134	41266136	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0015182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	220	344	0	ENST00000349496.5:c.133_135delTCT	p.Ser45del	p.S45del	ENST00000349496	NM_001904.3	44	cCTTct/cct																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900268	101900270	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0015182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	176	484	0	ENST00000374994.4:c.705_707del	p.Ser236del	p.S236del	ENST00000374994	NM_004612.2	234	ttCTCc/ttc																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20156718	20156719	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0015182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	272	268	2	ENST00000379607.5:c.38_39delinsTT	p.Arg13Leu	p.R13L	ENST00000379607	NM_001412.3	13	cGC/cTT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	32	596	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	351	1074	1	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
FGFR1	0	MSKCC	GRCh37	8	38318617	38318617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	184	649	5	ENST00000425967.3:c.8C>T	p.Ala3Val	p.A3V	ENST00000425967	NM_001174067.1	3	gCa/gTa																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	226	843	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	263	1008	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0015186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			56	342	816	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	152	1367	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
SPEN	0	MSKCC	GRCh37	1	16260699	16260699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	349	1191	0	ENST00000375759.3:c.7964C>T	p.Thr2655Ile	p.T2655I	ENST00000375759	NM_015001.2	2655	aCt/aTt																																																																														
PRKD1	0	MSKCC	GRCh37	14	30103666	30103666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	264	1096	0	ENST00000331968.5:c.1272G>A	p.Met424Ile	p.M424I	ENST00000331968	NM_002742.2	424	atG/atA																																																																														
SOX9	0	MSKCC	GRCh37	17	70117645	70117645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	316	1110	0	ENST00000245479.2:c.113G>A	p.Gly38Asp	p.G38D	ENST00000245479	NM_000346.3	38	gGc/gAc																																																																														
MSH2	0	MSKCC	GRCh37	2	47637434	47637434	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	227	1011	0	ENST00000233146.2:c.568C>G	p.Leu190Val	p.L190V	ENST00000233146	NM_000251.2	190	Ctc/Gtc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198260931	198260931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	291	1360	0	ENST00000335508.6:c.3388C>G	p.Pro1130Ala	p.P1130A	ENST00000335508	NM_012433.2	1130	Cct/Gct																																																																														
IRS1	0	MSKCC	GRCh37	2	227661755	227661755	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	180	871	0	ENST00000305123.5:c.1700G>C	p.Arg567Pro	p.R567P	ENST00000305123	NM_005544.2	567	cGa/cCa																																																																														
FYN	0	MSKCC	GRCh37	6	112015602	112015602	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	276	979	0	ENST00000368678.4:c.1240G>C	p.Asp414His	p.D414H	ENST00000368678		414	Gac/Cac																																																																														
KDM6A	0	MSKCC	GRCh37	X	44918581	44918585	+	frameshift_variant	Frame_Shift_Del	DEL	GGATG	GGATG	-			P-0015186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			417	242	1047	1	ENST00000377967.4:c.1065_1069delGATGG	p.Trp355Ter	p.W355*	ENST00000377967	NM_021140.2	355	tGGATG/t																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421078	49421078	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015186-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			292	153	543	1	ENST00000301067.7:c.14671C>T	p.Gln4891Ter	p.Q4891*	ENST00000301067	NM_003482.3	4891	Cag/Tag																																																																														
IGF1	0	MSKCC	GRCh37	12	102874100	102874100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	54	430	0	ENST00000307046.8:c.60G>C	p.Leu20Phe	p.L20F	ENST00000307046	NM_001111285.1	20	ttG/ttC																																																																														
CYLD	0	MSKCC	GRCh37	16	50820824	50820824	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	139	493	2	ENST00000398568.2:c.1999G>T	p.Glu667Ter	p.E667*	ENST00000398568	NM_001042412.1	667	Gag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47161821	47161821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	112	344	0	ENST00000409792.3:c.4305G>T	p.Glu1435Asp	p.E1435D	ENST00000409792	NM_014159.6	1435	gaG/gaT																																																																														
XPO1	0	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	113	525	2	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0015190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	182	417	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
JUN	0	MSKCC	GRCh37	1	59248675	59248676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	600	821	0	ENST00000371222.2:c.67dup	p.Ser23LysfsTer8	p.S23Kfs*8	ENST00000371222	NM_002228.3	23	agc/aAgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	349	483	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
TP53	0	MSKCC	GRCh37	17	7576914	7576914	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	127	616	0	ENST00000269305.4:c.932del	p.Asn311ThrfsTer34	p.N311Tfs*34	ENST00000269305	NM_001126112.2	311	aAc/ac																																																																														
CRLF2	0	MSKCC	GRCh37	X	1321292	1321292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	35	510	0	ENST00000381566.1:c.463C>T	p.Pro155Ser	p.P155S	ENST00000381566		155	Ccc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	700	547	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	14	314	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
AR	0	MSKCC	GRCh37	X	66765239	66765239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	42	333	0	ENST00000374690.3:c.251C>A	p.Pro84His	p.P84H	ENST00000374690	NM_000044.3	84	cCc/cAc																																																																														
AR	0	MSKCC	GRCh37	X	66765666	66765667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1368	772	913	0	ENST00000374690.3:c.683dup	p.Thr229HisfsTer6	p.T229Hfs*6	ENST00000374690	NM_000044.3	226	-/G																																																																														
PGR	0	MSKCC	GRCh37	11	100909922	100909922	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	52	490	0	ENST00000325455.5:c.2727G>C	p.Met909Ile	p.M909I	ENST00000325455	NM_001202474.3	909	atG/atC																																																																														
YAP1	0	MSKCC	GRCh37	11	102056857	102056857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	217	476	0	ENST00000282441.5:c.797G>A	p.Arg266His	p.R266H	ENST00000282441	NM_001130145.2	266	cGt/cAt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489093	56489093	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	272	487	0	ENST00000267101.3:c.1912G>T	p.Gly638Cys	p.G638C	ENST00000267101	NM_001982.3	638	Ggc/Tgc																																																																														
RB1	0	MSKCC	GRCh37	13	49039385	49039385	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	535	723	0	ENST00000267163.4:c.2370C>A	p.Tyr790Ter	p.Y790*	ENST00000267163	NM_000321.2	790	taC/taA																																																																														
TCF3	0	MSKCC	GRCh37	19	1627369	1627369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1296	262	593	0	ENST00000344749.5:c.355G>T	p.Gly119Cys	p.G119C	ENST00000344749	NM_001136139.2	119	Ggc/Tgc																																																																														
IL7R	0	MSKCC	GRCh37	5	35876319	35876319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	418	438	0	ENST00000303115.3:c.1111G>T	p.Ala371Ser	p.A371S	ENST00000303115	NM_002185.3	371	Gct/Tct																																																																														
STK19	0	MSKCC	GRCh37	6	31948275	31948275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	689	647	0	ENST00000375331.2:c.851G>T	p.Trp284Leu	p.W284L	ENST00000375331	NM_004197.1	284	tGg/tTg																																																																														
NBN	0	MSKCC	GRCh37	8	90993637	90993637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	93	438	0	ENST00000265433.3:c.286G>C	p.Gly96Arg	p.G96R	ENST00000265433	NM_002485.4	96	Ggt/Cgt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402421	139402421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	846	748	1	ENST00000277541.6:c.3496G>A	p.Gly1166Ser	p.G1166S	ENST00000277541	NM_017617.3	1166	Ggc/Agc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53245315	53245315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	612	687	0	ENST00000375401.3:c.722C>T	p.Ala241Val	p.A241V	ENST00000375401	NM_004187.3	241	gCa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	84	403	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101195	27101195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	100	644	0	ENST00000324856.7:c.4477C>T	p.Gln1493Ter	p.Q1493*	ENST00000324856	NM_006015.4	1493	Cag/Tag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44896898	44896898	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	133	586	0	ENST00000377967.4:c.620-2A>G		p.X207_splice	ENST00000377967	NM_021140.2	207																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	147	752	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
IRS1	0	MSKCC	GRCh37	2	227663157	227663157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	111	531	1	ENST00000305123.5:c.298G>A	p.Glu100Lys	p.E100K	ENST00000305123	NM_005544.2	100	Gag/Aag																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774795	73774795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1526	335	745	0	ENST00000254810.4:c.292G>A	p.Glu98Lys	p.E98K	ENST00000254810	NM_005324.3	98	Gaa/Aaa																																																																														
MLL	0	MSKCC	GRCh37	11	118373325	118373325	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	43	454	0	ENST00000534358.1:c.6718G>C	p.Glu2240Gln	p.E2240Q	ENST00000534358	NM_005933.3	2240	Gaa/Caa																																																																														
FLT1	0	MSKCC	GRCh37	13	29041045	29041045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	22	291	0	ENST00000282397.4:c.383T>C	p.Ile128Thr	p.I128T	ENST00000282397	NM_002019.4	128	aTt/aCt																																																																														
CALR	0	MSKCC	GRCh37	19	13054719	13054719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	22	271	0	ENST00000316448.5:c.1246G>T	p.Glu416Ter	p.E416*	ENST00000316448	NM_004343.3	416	Gag/Tag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52678763	52678763	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	179	453	0	ENST00000394830.3:c.856G>T	p.Glu286Ter	p.E286*	ENST00000394830	NM_018313.4	286	Gaa/Taa																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056213	26056213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	145	344	0	ENST00000343677.2:c.444G>T	p.Lys148Asn	p.K148N	ENST00000343677	NM_005319.3	148	aaG/aaT																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32187990	32187990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1395	96	665	0	ENST00000375023.3:c.1231C>G	p.Pro411Ala	p.P411A	ENST00000375023	NM_004557.3	411	Ccc/Gcc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243482	41243482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	70	536	0	ENST00000357654.3:c.4066C>G	p.Gln1356Glu	p.Q1356E	ENST00000357654	NM_007294.3	1356	Caa/Gaa																																																																														
POLE	0	MSKCC	GRCh37	12	133208987	133208987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	110	600	1	ENST00000320574.5:c.6244G>A	p.Glu2082Lys	p.E2082K	ENST00000320574	NM_006231.2	2082	Gag/Aag																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091782	29091782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	119	595	2	ENST00000328354.6:c.1175C>T	p.Ala392Val	p.A392V	ENST00000328354	NM_007194.3	392	gCg/gTg																																																																														
ATR	0	MSKCC	GRCh37	3	142171975	142171975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	35	538	0	ENST00000350721.4:c.7756G>A	p.Glu2586Lys	p.E2586K	ENST00000350721	NM_001184.3	2586	Gaa/Aaa																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5549445	5549445	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141466336		P-0015197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	128	670	0	ENST00000397747.3:c.472G>A	p.Val158Ile	p.V158I	ENST00000397747	NM_025239.3	158	Gtc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7579717	7579717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	368	761	1	ENST00000269305.4:c.79C>T	p.Pro27Ser	p.P27S	ENST00000269305	NM_001126112.2	27	Cct/Tct																																																																														
CTCF	0	MSKCC	GRCh37	16	67644821	67644821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	247	477	0	ENST00000264010.4:c.86G>A	p.Arg29Gln	p.R29Q	ENST00000264010	NM_006565.3	29	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	240	261	0				ENST00000310581	NM_198253.2																																																																																
MED12	0	MSKCC	GRCh37	X	70361148	70361149	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	58	334	22	ENST00000374080.3:c.6338_6339insCCA	p.Gln2112_Gln2113insHis	p.Q2112_Q2113insH	ENST00000374080		2112	-/CAC																																																																														
ERCC2	0	MSKCC	GRCh37	19	45873425	45873425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	409	610	0	ENST00000391945.4:c.71A>G	p.Tyr24Cys	p.Y24C	ENST00000391945	NM_000400.3	24	tAc/tGc																																																																														
IRS2	0	MSKCC	GRCh37	13	110436239	110436239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	87	292	2	ENST00000375856.3:c.2162C>T	p.Pro721Leu	p.P721L	ENST00000375856	NM_003749.2	721	cCg/cTg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467631	50467631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	133	409	0	ENST00000331340.3:c.866C>A	p.Ser289Tyr	p.S289Y	ENST00000331340	NM_006060.4	289	tCc/tAc																																																																														
PGR	0	MSKCC	GRCh37	11	100999781	100999781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1188	174	607	0	ENST00000325455.5:c.21G>T	p.Lys7Asn	p.K7N	ENST00000325455	NM_001202474.3	7	aaG/aaT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106939	27106960	+	frameshift_variant	Frame_Shift_Del	DEL	GCCATTGCAGTGCAGAAGGGCA	GCCATTGCAGTGCAGAAGGGCA	-			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	244	372	0	ENST00000324856.7:c.6551_6572delCCATTGCAGTGCAGAAGGGCAG	p.Ala2184ValfsTer9	p.A2184Vfs*9	ENST00000324856	NM_006015.4	2184	GCCATTGCAGTGCAGAAGGGCAgt/gt																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439577	51439577	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	221	323	1	ENST00000262662.1:c.142G>T	p.Gly48Ter	p.G48*	ENST00000262662		48	Gga/Tga																																																																														
TET1	0	MSKCC	GRCh37	10	70442635	70442635	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	176	516	0	ENST00000373644.4:c.4957A>G	p.Lys1653Glu	p.K1653E	ENST00000373644	NM_030625.2	1653	Aag/Gag																																																																														
CBL	0	MSKCC	GRCh37	11	119142462	119142462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	494	493	1	ENST00000264033.4:c.461T>C	p.Leu154Pro	p.L154P	ENST00000264033	NM_005188.3	154	cTg/cCg																																																																														
MLL2	0	MSKCC	GRCh37	12	49433304	49433304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	362	530	0	ENST00000301067.7:c.8143G>T	p.Gly2715Trp	p.G2715W	ENST00000301067	NM_003482.3	2715	Ggg/Tgg																																																																														
FLT3	0	MSKCC	GRCh37	13	28589780	28589780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	366	518	0	ENST00000241453.7:c.2600T>C	p.Ile867Thr	p.I867T	ENST00000241453	NM_004119.2	867	aTt/aCt																																																																														
RB1	0	MSKCC	GRCh37	13	49047519	49047519	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	223	371	0	ENST00000267163.4:c.2513C>G	p.Ser838Ter	p.S838*	ENST00000267163	NM_000321.2	838	tCa/tGa																																																																														
GREM1	0	MSKCC	GRCh37	15	33022892	33022892	+	start_lost,splice_region_variant	Translation_Start_Site	SNP	A	A	G			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	111	283	0	ENST00000300177.4:c.1A>G	p.Met1?	p.M1?	ENST00000300177	NM_001191322.1	1	Atg/Gtg																																																																														
MGA	0	MSKCC	GRCh37	15	41991327	41991327	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	222	587	0	ENST00000219905.7:c.2158A>T	p.Lys720Ter	p.K720*	ENST00000219905	NM_001164273.1	720	Aag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	849	572	0	ENST00000269305.4:c.920-1G>C		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
RPTOR	0	MSKCC	GRCh37	17	78921083	78921083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	197	651	1	ENST00000306801.3:c.3197G>A	p.Arg1066Gln	p.R1066Q	ENST00000306801	NM_020761.2	1066	cGg/cAg																																																																														
BRD4	0	MSKCC	GRCh37	19	15376212	15376212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	170	499	1	ENST00000263377.2:c.802G>T	p.Val268Leu	p.V268L	ENST00000263377	NM_058243.2	268	Gta/Tta																																																																														
UPF1	0	MSKCC	GRCh37	19	18968177	18968177	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	372	553	1	ENST00000262803.5:c.2017A>G	p.Lys673Glu	p.K673E	ENST00000262803	NM_002911.3	673	Aag/Gag																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091750	29091750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	171	437	1	ENST00000328354.6:c.1207G>A	p.Gly403Arg	p.G403R	ENST00000328354	NM_007194.3	403	Ggg/Agg																																																																														
FANCC	0	MSKCC	GRCh37	9	97897747	97897747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	155	421	0	ENST00000289081.3:c.724C>T	p.Leu242Phe	p.L242F	ENST00000289081	NM_000136.2	242	Ctc/Ttc																																																																														
RBM10	0	MSKCC	GRCh37	X	47035973	47035973	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	565	415	1	ENST00000329236.7:c.420G>A	p.Trp140Ter	p.W140*	ENST00000329236	NM_001204466.1	140	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	429	636	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
SPEN	0	MSKCC	GRCh37	1	16254678	16254679	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0015201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	356	615	1	ENST00000375759.3:c.1943_1944delinsTT	p.Arg648Leu	p.R648L	ENST00000375759	NM_015001.2	648	cGG/cTT																																																																														
FLT3	0	MSKCC	GRCh37	13	28636080	28636080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	764	673	0	ENST00000241453.7:c.292C>A	p.Pro98Thr	p.P98T	ENST00000241453	NM_004119.2	98	Cca/Aca																																																																														
RB1	0	MSKCC	GRCh37	13	48916735	48916735	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0015201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	231	342	0	ENST00000267163.4:c.265G>T	p.Gly89Ter	p.G89*	ENST00000267163	NM_000321.2	89	Gga/Tga																																																																														
INSR	0	MSKCC	GRCh37	19	7132306	7132306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	285	484	0	ENST00000302850.5:c.2705G>T	p.Arg902Leu	p.R902L	ENST00000302850	NM_000208.2	902	cGc/cTc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18266774	18266774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	382	365	0	ENST00000222254.8:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000222254	NM_005027.3	29	Gac/Tac																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197161	26197161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	255	464	0	ENST00000356476.2:c.318G>C	p.Glu106Asp	p.E106D	ENST00000356476		106	gaG/gaC																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396312	139396322	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCGGTGGT	CTGCCGGTGGT	-			P-0015201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	483	841	0	ENST00000277541.6:c.5516_5526del	p.Asp1839ValfsTer10	p.D1839Vfs*10	ENST00000277541	NM_017617.3	1839	gACCACCGGCAG/g																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412266	139412266	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	550	828	0	ENST00000277541.6:c.1379del	p.Pro460ArgfsTer171	p.P460Rfs*171	ENST00000277541	NM_017617.3	460	cCg/cg																																																																														
BCOR	0	MSKCC	GRCh37	X	39932902	39932902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	392	536	0	ENST00000378444.4:c.1697G>T	p.Arg566Leu	p.R566L	ENST00000378444	NM_001123385.1	566	cGc/cTc																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123504029	123504029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	166	332	0	ENST00000371139.4:c.205G>T	p.Ala69Ser	p.A69S	ENST00000371139	NM_001114937.2	69	Gca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	560	785	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3830754	3830754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	101	338	0	ENST00000262367.5:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000262367	NM_004380.2	601	cGg/cAg																																																																														
LATS2	0	MSKCC	GRCh37	13	21557547	21557547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	114	572	0	ENST00000382592.4:c.2298C>G	p.His766Gln	p.H766Q	ENST00000382592	NM_014572.2	766	caC/caG																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467800	66467800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	12	289	0	ENST00000273854.3:c.469G>C	p.Glu157Gln	p.E157Q	ENST00000273854	NM_004439.5	157	Gag/Cag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467874	66467874	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	84	291	0	ENST00000273854.3:c.395T>G	p.Phe132Cys	p.F132C	ENST00000273854	NM_004439.5	132	tTt/tGt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31451743	31451743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	86	275	0	ENST00000344624.3:c.2579C>T	p.Ala860Val	p.A860V	ENST00000344624		860	gCa/gTa																																																																														
RASA1	0	MSKCC	GRCh37	5	86672359	86672359	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	14	321	0	ENST00000274376.6:c.2161G>T	p.Glu721Ter	p.E721*	ENST00000274376	NM_002890.2	721	Gaa/Taa																																																																														
PREX2	0	MSKCC	GRCh37	8	69046507	69046507	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	43	486	0	ENST00000288368.4:c.3980A>C	p.Asn1327Thr	p.N1327T	ENST00000288368	NM_024870.2	1327	aAc/aCc																																																																														
AR	0	MSKCC	GRCh37	X	66905953	66905953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	21	252	1	ENST00000374690.3:c.1870G>A	p.Gly624Arg	p.G624R	ENST00000374690	NM_000044.3	624	Ggg/Agg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	13	274	0				ENST00000310581	NM_198253.2																																																																																
ZRSR2	0	MSKCC	GRCh37	X	15827398	15827398	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	13	229	1	ENST00000307771.7:c.514T>A	p.Cys172Ser	p.C172S	ENST00000307771	NM_005089.3	172	Tgt/Agt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	20	291	0	ENST00000349496.5:c.109T>C	p.Ser37Pro	p.S37P	ENST00000349496	NM_001904.3	37	Tct/Cct																																																																														
ERCC2	0	MSKCC	GRCh37	19	45855831	45855831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	32	608	0	ENST00000391945.4:c.1979C>T	p.Ala660Val	p.A660V	ENST00000391945	NM_000400.3	660	gCg/gTg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114905804	114905804	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	43	551	0	ENST00000543371.1:c.823G>T	p.Gly275Ter	p.G275*	ENST00000543371	NM_001198531.1	275	Gga/Tga																																																																														
MLL2	0	MSKCC	GRCh37	12	49446438	49446438	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	50	424	0	ENST00000301067.7:c.1167C>G	p.Tyr389Ter	p.Y389*	ENST00000301067	NM_003482.3	389	taC/taG																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789707	3789707	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	25	490	0	ENST00000262367.5:c.4152A>T	p.Glu1384Asp	p.E1384D	ENST00000262367	NM_004380.2	1384	gaA/gaT																																																																														
GNAS	0	MSKCC	GRCh37	20	57466829	57466829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	31	393	1	ENST00000371085.3:c.48G>T	p.Glu16Asp	p.E16D	ENST00000371085	NM_000516.4	16	gaG/gaT																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128419974	128419974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	30	550	2	ENST00000265960.3:c.454C>A	p.Gln152Lys	p.Q152K	ENST00000265960	NM_001006617.1	152	Cag/Aag																																																																														
ATRX	0	MSKCC	GRCh37	X	76939807	76939807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	24	230	0	ENST00000373344.5:c.941G>A	p.Arg314Lys	p.R314K	ENST00000373344	NM_000489.3	314	aGa/aAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	161	684	0	ENST00000269305.4:c.518T>G	p.Val173Gly	p.V173G	ENST00000269305	NM_001126112.2	173	gTg/gGg																																																																														
CCND2	0	MSKCC	GRCh37	12	4383268	4383268	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	32	475	0	ENST00000261254.3:c.62T>A	p.Leu21His	p.L21H	ENST00000261254	NM_001759.3	21	cTc/cAc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99500294	99500294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	129	587	0	ENST00000268035.6:c.3727G>A	p.Glu1243Lys	p.E1243K	ENST00000268035	NM_000875.3	1243	Gaa/Aaa																																																																														
SOS1	0	MSKCC	GRCh37	2	39237798	39237798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	62	468	0	ENST00000402219.2:c.2437G>C	p.Asp813His	p.D813H	ENST00000402219	NM_005633.3	813	Gac/Cac																																																																														
PLK2	0	MSKCC	GRCh37	5	57754904	57754905	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	50	305	0	ENST00000274289.3:c.285dup	p.Cys96MetfsTer10	p.C96Mfs*10	ENST00000274289	NM_006622.3	95	-/A																																																																														
MLL3	0	MSKCC	GRCh37	7	151845479	151845479	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	157	618	0	ENST00000262189.6:c.13533T>G	p.Ile4511Met	p.I4511M	ENST00000262189	NM_170606.2	4511	atT/atG																																																																														
KIT	0	MSKCC	GRCh37	4	55569989	55569989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	247	440	0	ENST00000288135.5:c.856G>C	p.Gly286Arg	p.G286R	ENST00000288135	NM_000222.2	286	Gga/Cga																																																																														
PTEN	0	MSKCC	GRCh37	10	89624288	89624288	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	GGATG			P-0015207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	150	476	0	ENST00000371953.3:c.62delinsGGATG	p.Phe21TrpfsTer24	p.F21Wfs*24	ENST00000371953	NM_000314.4	21	tTc/tGGATGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	339	691	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	157	542	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	144	412	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PLCG2	0	MSKCC	GRCh37	16	81991588	81991589	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	98	342	0	ENST00000359376.3:c.3785dup	p.Phe1263ValfsTer11	p.F1263Vfs*11	ENST00000359376	NM_002661.3	1261	-/A																																																																														
EPCAM	0	MSKCC	GRCh37	2	47596676	47596676	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	75	292	0	ENST00000263735.4:c.32T>G	p.Leu11Arg	p.L11R	ENST00000263735	NM_002354.2	11	cTt/cGt																																																																														
FLT4	0	MSKCC	GRCh37	5	180043464	180043464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	212	634	0	ENST00000261937.6:c.3122G>A	p.Arg1041Gln	p.R1041Q	ENST00000261937	NM_182925.4	1041	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112170714	112170715	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0015208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	156	502	0	ENST00000257430.4:c.1810_1811delinsT	p.Ala604LeufsTer6	p.A604Lfs*6	ENST00000257430	NM_000038.5	604	GCt/Tt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	146	404	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
CHEK1	0	MSKCC	GRCh37	11	125525140	125525140	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	200	538	0	ENST00000428830.2:c.1356G>C	p.Lys452Asn	p.K452N	ENST00000428830	NM_001114121.2	452	aaG/aaC																																																																														
FAT1	0	MSKCC	GRCh37	4	187541116	187541121	+	inframe_deletion	In_Frame_Del	DEL	GCTGTT	GCTGTT	-			P-0015209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	114	358	0	ENST00000441802.2:c.6619_6624delAACAGC	p.Asn2207_Ser2208del	p.N2207_S2208del	ENST00000441802	NM_005245.3	2207	AACAGC/-																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	69	551	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	61	587	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5221131	5221131	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201447856		P-0015212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	33	617	1	ENST00000357368.4:c.3335C>T	p.Thr1112Met	p.T1112M	ENST00000357368	NM_002850.3	1112	aCg/aTg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691945	30691945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	57	300	0	ENST00000359013.4:c.522C>A	p.Phe174Leu	p.F174L	ENST00000359013	NM_001024847.2	174	ttC/ttA																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971042	21971055	+	frameshift_variant	Frame_Shift_Del	DEL	CGTCCAGCCGCGCC	CGTCCAGCCGCGCC	-			P-0015212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	86	311	0	ENST00000304494.5:c.303_316delGGCGCGGCTGGACG	p.Leu104CysfsTer11	p.L104Cfs*11	ENST00000304494	NM_000077.4	101	ggGGCGCGGCTGGACGtg/ggtg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971042	21971055	+	frameshift_variant	Frame_Shift_Del	DEL	CGTCCAGCCGCGCC	CGTCCAGCCGCGCC	-			P-0015212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	86	311	0	ENST00000304494.5:c.303_316delGGCGCGGCTGGACG	p.Leu104CysfsTer11	p.L104Cfs*11	ENST00000304494	NM_000077.4	101	ggGGCGCGGCTGGACGtg/ggtg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971042	21971055	+	frameshift_variant	Frame_Shift_Del	DEL	CGTCCAGCCGCGCC	CGTCCAGCCGCGCC	-			P-0015212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	86	311	0	ENST00000304494.5:c.303_316delGGCGCGGCTGGACG	p.Leu104CysfsTer11	p.L104Cfs*11	ENST00000304494	NM_000077.4	101	ggGGCGCGGCTGGACGtg/ggtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	57	454	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
NF1	0	MSKCC	GRCh37	17	29559101	29559101	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	24	92	1	ENST00000358273.4:c.3208C>T	p.Gln1070Ter	p.Q1070*	ENST00000358273	NM_001042492.2	1070	Cag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1220698	1220698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	118	755	0	ENST00000326873.7:c.716G>T	p.Trp239Leu	p.W239L	ENST00000326873	NM_000455.4	239	tGg/tTg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610500	10610501	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	54	579	0	ENST00000171111.5:c.209_210delinsCT	p.Leu70Pro	p.L70P	ENST00000171111	NM_203500.1	70	cTG/cCT																																																																														
CUL3	0	MSKCC	GRCh37	2	225422501	225422501	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	90	394	0	ENST00000264414.4:c.139A>T	p.Lys47Ter	p.K47*	ENST00000264414	NM_003590.4	47	Aag/Tag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41274910	41274910	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	57	348	0	ENST00000349496.5:c.1160A>G	p.Asn387Ser	p.N387S	ENST00000349496	NM_001904.3	387	aAt/aGt																																																																														
BAP1	0	MSKCC	GRCh37	3	52437351	52437587	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGACACTTTGTGGTCACTTGGCCACTTCCCTCCTCCCTCCTGGGTGCACCAAGTGGCCAGTGAGCCAGTCCAAGGCCCACCTGTCAGCGCCAGGGGACTCAGCACCCCATCCTCAGCCAGGTGCAGCAGGCCTGTGCTGATGACAGGACCCAGATCACGGACAGCACGGTTGTAGCGTATGCAGTCAACACGCAGCAGGCTGTCATCCTCTCCAAAAAGCACCTTGGAGATGTGGG	AGGACACTTTGTGGTCACTTGGCCACTTCCCTCCTCCCTCCTGGGTGCACCAAGTGGCCAGTGAGCCAGTCCAAGGCCCACCTGTCAGCGCCAGGGGACTCAGCACCCCATCCTCAGCCAGGTGCAGCAGGCCTGTGCTGATGACAGGACCCAGATCACGGACAGCACGGTTGTAGCGTATGCAGTCAACACGCAGCAGGCTGTCATCCTCTCCAAAAAGCACCTTGGAGATGTGGG	-			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	60	298	0	ENST00000460680.1:c.1574_1730-37del		p.X525_splice	ENST00000460680	NM_004656.3	525																																																																															
ATR	0	MSKCC	GRCh37	3	142242872	142242872	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	64	500	2	ENST00000350721.4:c.4115C>G	p.Ser1372Ter	p.S1372*	ENST00000350721	NM_001184.3	1372	tCa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	276	460	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100956	41100956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	101	436	2	ENST00000373198.4:c.1400C>A	p.Pro467His	p.P467H	ENST00000373198	NM_133170.3	467	cCc/cAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55221822	55221822	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	45	646	2	ENST00000275493.2:c.866C>A	p.Ala289Asp	p.A289D	ENST00000275493	NM_005228.3	289	gCc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	356	709	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																														
FAT1	0	MSKCC	GRCh37	4	187541523	187541523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	248	354	0	ENST00000441802.2:c.6217G>T	p.Asp2073Tyr	p.D2073Y	ENST00000441802	NM_005245.3	2073	Gac/Tac																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31383489	31383489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	61	499	0	ENST00000328111.2:c.1286G>A	p.Ser429Asn	p.S429N	ENST00000328111	NM_006892.3	429	aGc/aAc																																																																														
SPEN	0	MSKCC	GRCh37	1	16237660	16237660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	50	455	0	ENST00000375759.3:c.1107G>T	p.Gln369His	p.Q369H	ENST00000375759	NM_015001.2	369	caG/caT																																																																														
NEGR1	0	MSKCC	GRCh37	1	72400916	72400916	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	46	311	0	ENST00000357731.5:c.255del	p.Trp85CysfsTer12	p.W85Cfs*12	ENST00000357731	NM_173808.2	85	tgG/tg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64135709	64135709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	218	542	1	ENST00000334205.4:c.1177G>T	p.Val393Leu	p.V393L	ENST00000334205	NM_003942.2	393	Gtg/Ttg																																																																														
CCND2	0	MSKCC	GRCh37	12	4388073	4388073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	23	241	1	ENST00000261254.3:c.559C>A	p.Leu187Met	p.L187M	ENST00000261254	NM_001759.3	187	Ctg/Atg																																																																														
MLL2	0	MSKCC	GRCh37	12	49434700	49434700	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	73	745	0	ENST00000301067.7:c.6853C>G	p.Leu2285Val	p.L2285V	ENST00000301067	NM_003482.3	2285	Cta/Gta																																																																														
BLM	0	MSKCC	GRCh37	15	91354453	91354453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	77	299	1	ENST00000355112.3:c.3893G>T	p.Gly1298Val	p.G1298V	ENST00000355112	NM_000057.2	1298	gGg/gTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991473	72991473	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	449	619	1	ENST00000268489.5:c.2572G>T	p.Glu858Ter	p.E858*	ENST00000268489	NM_006885.3	858	Gag/Tag																																																																														
EZH1	0	MSKCC	GRCh37	17	40876390	40876390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	70	604	1	ENST00000428826.2:c.299G>A	p.Arg100Lys	p.R100K	ENST00000428826		100	aGg/aAg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533868	63533868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	205	446	0	ENST00000307078.5:c.1286G>T	p.Gly429Val	p.G429V	ENST00000307078	NM_004655.3	429	gGc/gTc																																																																														
BABAM1	0	MSKCC	GRCh37	19	17386615	17386615	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	342	785	2	ENST00000359435.4:c.550G>T	p.Glu184Ter	p.E184*	ENST00000359435	NM_001033549.1	184	Gaa/Taa																																																																														
AKT2	0	MSKCC	GRCh37	19	40748590	40748590	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	149	486	0	ENST00000392038.2:c.292G>T	p.Glu98Ter	p.E98*	ENST00000392038	NM_001626.4	98	Gag/Tag																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31394118	31394118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	281	360	0	ENST00000328111.2:c.2405G>T	p.Cys802Phe	p.C802F	ENST00000328111	NM_006892.3	802	tGc/tTc																																																																														
ERG	0	MSKCC	GRCh37	21	39763592	39763592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	40	336	0	ENST00000288319.7:c.860G>T	p.Arg287Leu	p.R287L	ENST00000288319	NM_182918.3	287	cGt/cTt																																																																														
EP300	0	MSKCC	GRCh37	22	41523644	41523645	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	266	675	0	ENST00000263253.7:c.1060_1061delinsTT	p.Arg354Leu	p.R354L	ENST00000263253	NM_001429.3	354	CGg/TTg																																																																														
EP300	0	MSKCC	GRCh37	22	41562613	41562613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	54	325	0	ENST00000263253.7:c.3817G>T	p.Asp1273Tyr	p.D1273Y	ENST00000263253	NM_001429.3	1273	Gat/Tat																																																																														
MST1R	0	MSKCC	GRCh37	3	49928972	49928972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	70	623	0	ENST00000296474.3:c.3394G>T	p.Gly1132Trp	p.G1132W	ENST00000296474	NM_002447.2	1132	Ggg/Tgg																																																																														
MITF	0	MSKCC	GRCh37	3	69987111	69987111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	50	426	0	ENST00000352241.4:c.493G>T	p.Gly165Cys	p.G165C	ENST00000352241	NM_198159.2	165	Ggc/Tgc																																																																														
TP63	0	MSKCC	GRCh37	3	189584501	189584501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	156	337	0	ENST00000264731.3:c.797G>T	p.Arg266Leu	p.R266L	ENST00000264731	NM_003722.4	266	cGa/cTa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188946	32188946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	434	615	0	ENST00000375023.3:c.608G>T	p.Gly203Val	p.G203V	ENST00000375023	NM_004557.3	203	gGa/gTa																																																																														
SMO	0	MSKCC	GRCh37	7	128829192	128829192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	133	360	0	ENST00000249373.3:c.200C>A	p.Ala67Asp	p.A67D	ENST00000249373	NM_005631.4	67	gCt/gAt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53227699	53227699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	179	530	0	ENST00000375401.3:c.2489T>C	p.Leu830Pro	p.L830P	ENST00000375401	NM_004187.3	830	cTg/cCg																																																																														
AR	0	MSKCC	GRCh37	X	66765238	66765238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	21	320	0	ENST00000374690.3:c.250C>A	p.Pro84Thr	p.P84T	ENST00000374690	NM_000044.3	84	Ccc/Acc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98231248	98231248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	220	530	4	ENST00000331920.6:c.2035G>A	p.Ala679Thr	p.A679T	ENST00000331920	NM_000264.3	679	Gct/Act																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1355	531	518	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123504056	123504056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	138	234	1	ENST00000371139.4:c.232C>T	p.Arg78Trp	p.R78W	ENST00000371139	NM_001114937.2	78	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	975	601	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																														
RB1	0	MSKCC	GRCh37	13	48881429	48881429	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	169	111	0	ENST00000267163.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000267163	NM_000321.2	51	Gaa/Taa																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257453	19257453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2324	558	790	1	ENST00000162023.5:c.680G>T	p.Ser227Ile	p.S227I	ENST00000162023		227	aGc/aTc																																																																														
IL7R	0	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	703	507	0	ENST00000303115.3:c.1241C>A	p.Thr414Lys	p.T414K	ENST00000303115	NM_002185.3	414	aCg/aAg																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056352	26056352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	155	184	0	ENST00000343677.2:c.305C>G	p.Ser102Cys	p.S102C	ENST00000343677	NM_005319.3	102	tCt/tGt																																																																														
ESR1	0	MSKCC	GRCh37	6	152129052	152129052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	758	483	0	ENST00000206249.3:c.5C>A	p.Thr2Asn	p.T2N	ENST00000206249	NM_000125.3	2	aCc/aAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8404640	8404640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	227	190	0	ENST00000356435.5:c.4107G>T	p.Gln1369His	p.Q1369H	ENST00000356435		1369	caG/caT																																																																														
STAG2	0	MSKCC	GRCh37	X	123195666	123195666	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	379	391	0	ENST00000218089.9:c.1580G>T	p.Cys527Phe	p.C527F	ENST00000218089	NM_001042749.1	527	tGt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	473	765	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128201212	128201212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	105	563	0	ENST00000265960.3:c.1523G>A	p.Arg508His	p.R508H	ENST00000265960	NM_001006617.1	508	cGt/cAt																																																																														
TERT	0	MSKCC	GRCh37	5	1294444	1294444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1736	102	743	1	ENST00000310581.5:c.557C>T	p.Pro186Leu	p.P186L	ENST00000310581	NM_198253.2	186	cCc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	200	482	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	207	644	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	275	453	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602923	10602923	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	363	847	0	ENST00000171111.5:c.655G>T	p.Glu219Ter	p.E219*	ENST00000171111	NM_203500.1	219	Gag/Tag																																																																														
NEGR1	0	MSKCC	GRCh37	1	72400815	72400815	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	30	320	0	ENST00000357731.5:c.356C>G	p.Ser119Cys	p.S119C	ENST00000357731	NM_173808.2	119	tCt/tGt																																																																														
AXL	0	MSKCC	GRCh37	19	41763410	41763410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	230	522	0	ENST00000301178.4:c.2209G>C	p.Val737Leu	p.V737L	ENST00000301178	NM_021913.4	737	Gtg/Ctg																																																																														
KDR	0	MSKCC	GRCh37	4	55980434	55980434	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	56	236	0	ENST00000263923.4:c.659-2A>G		p.X220_splice	ENST00000263923	NM_002253.2	220																																																																															
EZH2	0	MSKCC	GRCh37	7	148515146	148515146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	119	339	0	ENST00000320356.2:c.1063C>T	p.Pro355Ser	p.P355S	ENST00000320356	NM_004456.4	355	Cca/Tca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500865	8500865	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	149	439	0	ENST00000356435.5:c.2017C>G	p.Leu673Val	p.L673V	ENST00000356435		673	Ctt/Gtt																																																																														
NF1	0	MSKCC	GRCh37	17	29559090	29559090	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	41	40	0	ENST00000358273.4:c.3198-1G>A		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																															
DICER1	0	MSKCC	GRCh37	14	95560382	95560382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	56	394	0	ENST00000343455.3:c.5207G>T	p.Arg1736Leu	p.R1736L	ENST00000343455	NM_177438.2	1736	cGg/cTg																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944864	31944864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	124	519	0	ENST00000340398.3:c.237C>A	p.Asn79Lys	p.N79K	ENST00000340398	NM_001013699.2	79	aaC/aaA																																																																														
TP53	0	MSKCC	GRCh37	17	7577567	7577569	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	132	473	0	ENST00000269305.4:c.712_714del	p.Cys238del	p.C238del	ENST00000269305	NM_001126112.2	238	TGT/-																																																																														
NF1	0	MSKCC	GRCh37	17	29576091	29576091	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	152	538	0	ENST00000358273.4:c.4064C>G	p.Ser1355Ter	p.S1355*	ENST00000358273	NM_001042492.2	1355	tCa/tGa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467898	50467898	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	47	426	0	ENST00000331340.3:c.1133A>G	p.Lys378Arg	p.K378R	ENST00000331340	NM_006060.4	378	aAg/aGg																																																																														
NBN	0	MSKCC	GRCh37	8	90965913	90965913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	58	153	0	ENST00000265433.3:c.1404G>T	p.Arg468Ser	p.R468S	ENST00000265433	NM_002485.4	468	agG/agT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	34	372	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
VHL	0	MSKCC	GRCh37	3	10191488	10191488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	118	354	0	ENST00000256474.2:c.481C>T	p.Arg161Ter	p.R161*	ENST00000256474	NM_000551.3	161	Cga/Tga																																																																														
ATM	0	MSKCC	GRCh37	11	108122754	108122754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	31	566	0	ENST00000278616.4:c.1798C>T	p.His600Tyr	p.H600Y	ENST00000278616	NM_000051.3	600	Cac/Tac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088756	27088756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	326	940	1	ENST00000324856.7:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000324856	NM_006015.4	789	Cag/Tag																																																																														
PALB2	0	MSKCC	GRCh37	16	23646417	23646417	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	330	790	1	ENST00000261584.4:c.1450T>A	p.Leu484Ile	p.L484I	ENST00000261584	NM_024675.3	484	Tta/Ata																																																																														
FAM175A	0	MSKCC	GRCh37	4	84397829	84397829	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	259	616	0	ENST00000321945.7:c.182T>C	p.Ile61Thr	p.I61T	ENST00000321945	NM_139076.2	61	aTt/aCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	80	713	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0015236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	54	504	1	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106279	27106280	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	105	914	1	ENST00000324856.7:c.5891dup	p.Thr1965AspfsTer34	p.T1965Dfs*34	ENST00000324856	NM_006015.4	1964	gag/gAag																																																																														
SOX9	0	MSKCC	GRCh37	17	70120218	70120218	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	101	941	1	ENST00000245479.2:c.1220del	p.Tyr407SerfsTer63	p.Y407Sfs*63	ENST00000245479	NM_000346.3	407	tAc/tc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	128	813	3	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	179	668	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	123	689	3	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	544	859	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	401	1023	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	236	617	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	262	599	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	281	842	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931452	131931452	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772667708		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	383	626	22	ENST00000265335.6:c.2165del	p.Lys722ArgfsTer14	p.K722Rfs*14	ENST00000265335		719	ctA/ct																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	365	695	21	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	260	588	11	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	277	572	10	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272447	15272447	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201105335		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	248	1249	4	ENST00000263388.2:c.5992C>T	p.Arg1998Cys	p.R1998C	ENST00000263388	NM_000435.2	1998	Cgt/Tgt																																																																														
FLT4	0	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	174	934	9	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																														
MTOR	0	MSKCC	GRCh37	1	11264661	11264661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	146	797	2	ENST00000361445.4:c.3901C>T	p.Arg1301Cys	p.R1301C	ENST00000361445	NM_004958.3	1301	Cgc/Tgc																																																																														
ABL1	0	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	330	1125	5	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																														
POLE	0	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	176	981	6	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																														
XRCC2	0	MSKCC	GRCh37	7	152345768	152345769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	156	465	0	ENST00000359321.1:c.801dup	p.His268ThrfsTer11	p.H268Tfs*11	ENST00000359321	NM_005431.1	267	-/A																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	134	818	0	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	340	856	1	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	312	949	8	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																														
LATS1	0	MSKCC	GRCh37	6	150001524	150001524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	191	821	2	ENST00000253339.5:c.2080C>T	p.Arg694Cys	p.R694C	ENST00000253339		694	Cgt/Tgt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	298	1055	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
U2AF1	0	MSKCC	GRCh37	21	44514810	44514810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	141	716	2	ENST00000291552.4:c.437C>T	p.Pro146Leu	p.P146L	ENST00000291552	NM_006758.2	146	cCc/cTc																																																																														
SESN2	0	MSKCC	GRCh37	1	28598900	28598900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	351	982	0	ENST00000253063.3:c.460G>A	p.Glu154Lys	p.E154K	ENST00000253063	NM_031459.4	154	Gag/Aag																																																																														
JUN	0	MSKCC	GRCh37	1	59248438	59248438	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	245	618	0	ENST00000371222.2:c.305A>C	p.Asn102Thr	p.N102T	ENST00000371222	NM_002228.3	102	aAc/aCc																																																																														
PARP1	0	MSKCC	GRCh37	1	226567685	226567685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	216	675	1	ENST00000366794.5:c.1481C>T	p.Ala494Val	p.A494V	ENST00000366794	NM_001618.3	494	gCc/gTc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63810688	63810688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	192	538	0	ENST00000279873.7:c.775C>A	p.Pro259Thr	p.P259T	ENST00000279873	NM_032199.2	259	Cca/Aca																																																																														
TET1	0	MSKCC	GRCh37	10	70446306	70446306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	145	819	0	ENST00000373644.4:c.5246A>G	p.Gln1749Arg	p.Q1749R	ENST00000373644	NM_030625.2	1749	cAg/cGg																																																																														
FGF4	0	MSKCC	GRCh37	11	69588877	69588877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	261	792	3	ENST00000168712.1:c.359C>T	p.Pro120Leu	p.P120L	ENST00000168712	NM_002007.2	120	cCc/cTc																																																																														
FGF4	0	MSKCC	GRCh37	11	69589732	69589732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	95	239	0	ENST00000168712.1:c.121G>A	p.Ala41Thr	p.A41T	ENST00000168712	NM_002007.2	41	Gcc/Acc																																																																														
PGR	0	MSKCC	GRCh37	11	100999142	100999142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	327	883	2	ENST00000325455.5:c.660G>T	p.Glu220Asp	p.E220D	ENST00000325455	NM_001202474.3	220	gaG/gaT																																																																														
YAP1	0	MSKCC	GRCh37	11	101981871	101981871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	199	1102	0	ENST00000282441.5:c.292C>T	p.Pro98Ser	p.P98S	ENST00000282441	NM_001130145.2	98	Ccg/Tcg																																																																														
MLL2	0	MSKCC	GRCh37	12	49426576	49426578	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	138	813	0	ENST00000301067.7:c.11910_11912delGCA	p.Gln3974del	p.Q3974del	ENST00000301067	NM_003482.3	3970	caGCAa/caa																																																																														
LATS2	0	MSKCC	GRCh37	13	21562043	21562043	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	225	1297	6	ENST00000382592.4:c.1876C>T	p.Gln626Ter	p.Q626*	ENST00000382592	NM_014572.2	626	Cag/Tag																																																																														
ERCC5	0	MSKCC	GRCh37	13	103528078	103528078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	247	621	0	ENST00000355739.4:c.3386C>T	p.Ser1129Leu	p.S1129L	ENST00000355739	NM_000123.3	1129	tCg/tTg																																																																														
DICER1	0	MSKCC	GRCh37	14	95599668	95599668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	162	569	3	ENST00000343455.3:c.128C>T	p.Thr43Met	p.T43M	ENST00000343455	NM_177438.2	43	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578193	7578193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	348	1113	0	ENST00000269305.4:c.656C>A	p.Pro219His	p.P219H	ENST00000269305	NM_001126112.2	219	cCc/cAc																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7980013	7980013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	290	951	2	ENST00000319144.4:c.1324C>T	p.Arg442Trp	p.R442W	ENST00000319144	NM_001139.2	442	Cgg/Tgg																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804391	46804391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	176	630	0	ENST00000290295.7:c.616C>T	p.His206Tyr	p.H206Y	ENST00000290295	NM_006361.5	206	Cac/Tac																																																																														
RNF43	0	MSKCC	GRCh37	17	56435355	56435357	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	145	919	0	ENST00000407977.2:c.1780_1782del	p.Pro594del	p.P594del	ENST00000407977		594	CCT/-																																																																														
SOX9	0	MSKCC	GRCh37	17	70119096	70119096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	122	487	0	ENST00000245479.2:c.672del	p.Gly225AlafsTer28	p.G225Afs*28	ENST00000245479	NM_000346.3	223	tCc/tc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39600670	39600670	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	44	382	0	ENST00000262039.4:c.1484+1G>A		p.X495_splice	ENST00000262039	NM_002647.2	495																																																																															
DOT1L	0	MSKCC	GRCh37	19	2226454	2226454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	191	1054	0	ENST00000398665.3:c.3934C>A	p.Pro1312Thr	p.P1312T	ENST00000398665	NM_032482.2	1312	Cct/Act																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141412	11141412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	147	770	3	ENST00000344626.4:c.3389C>T	p.Thr1130Met	p.T1130M	ENST00000344626	NM_003072.3	1130	aCg/aTg																																																																														
UPF1	0	MSKCC	GRCh37	19	18967089	18967089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	194	936	1	ENST00000262803.5:c.1804G>A	p.Ala602Thr	p.A602T	ENST00000262803	NM_002911.3	602	Gca/Aca																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264348	46264348	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	105	671	0	ENST00000371998.3:c.1400delC	p.Pro467HisfsTer15	p.P467Hfs*15	ENST00000371998		465	agC/ag																																																																														
EP300	0	MSKCC	GRCh37	22	41553172	41553172	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	68	548	0	ENST00000263253.7:c.3262-1G>A		p.X1088_splice	ENST00000263253	NM_001429.3	1088																																																																															
MST1R	0	MSKCC	GRCh37	3	49933695	49933695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	377	1078	0	ENST00000296474.3:c.2582C>T	p.Pro861Leu	p.P861L	ENST00000296474	NM_002447.2	861	cCc/cTc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52610608	52610608	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	122	828	0	ENST00000394830.3:c.3565G>T	p.Glu1189Ter	p.E1189*	ENST00000394830	NM_018313.4	1189	Gaa/Taa																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138384031	138384031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	115	729	0	ENST00000289153.2:c.2519G>A	p.Gly840Asp	p.G840D	ENST00000289153	NM_006219.2	840	gGc/gAc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38978703	38978703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	170	687	0	ENST00000357387.3:c.803C>T	p.Thr268Ile	p.T268I	ENST00000357387	NM_152756.3	268	aCa/aTa																																																																														
NSD1	0	MSKCC	GRCh37	5	176636997	176636997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	141	936	2	ENST00000439151.2:c.1597C>A	p.Leu533Ile	p.L533I	ENST00000439151	NM_022455.4	533	Ctt/Att																																																																														
MDC1	0	MSKCC	GRCh37	6	30680418	30680418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	239	747	0	ENST00000376406.3:c.1301A>G	p.Asp434Gly	p.D434G	ENST00000376406	NM_014641.2	434	gAc/gGc																																																																														
MLL3	0	MSKCC	GRCh37	7	151876974	151876974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	186	687	2	ENST00000262189.6:c.7387C>T	p.Arg2463Cys	p.R2463C	ENST00000262189	NM_170606.2	2463	Cgt/Tgt																																																																														
MLL3	0	MSKCC	GRCh37	7	151891145	151891145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	222	803	1	ENST00000262189.6:c.4609C>T	p.Pro1537Ser	p.P1537S	ENST00000262189	NM_170606.2	1537	Cca/Tca																																																																														
MLL3	0	MSKCC	GRCh37	7	151900029	151900029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	130	637	0	ENST00000262189.6:c.4082C>T	p.Ala1361Val	p.A1361V	ENST00000262189	NM_170606.2	1361	gCc/gTc																																																																														
SOX17	0	MSKCC	GRCh37	8	55370754	55370754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	127	751	0	ENST00000297316.4:c.56C>T	p.Ala19Val	p.A19V	ENST00000297316	NM_022454.3	19	gCg/gTg																																																																														
SOX17	0	MSKCC	GRCh37	8	55372202	55372202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	146	652	1	ENST00000297316.4:c.892G>T	p.Gly298Cys	p.G298C	ENST00000297316	NM_022454.3	298	Ggc/Tgc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87636345	87636345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	215	894	0	ENST00000277120.3:c.2510T>C	p.Leu837Pro	p.L837P	ENST00000277120		837	cTa/cCa																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	150	455	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871830	35871835	+	inframe_deletion	In_Frame_Del	DEL	CCACTG	CCACTG	-			P-0015239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	132	769	0	ENST00000216797.5:c.671_676del	p.Ala224_Val225del	p.A224_V225del	ENST00000216797	NM_020529.2	224	gCAGTGGac/gac																																																																														
SOS1	0	MSKCC	GRCh37	2	39213242	39213243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	135	1199	3	ENST00000402219.2:c.3724dup	p.Ser1242LysfsTer2	p.S1242Kfs*2	ENST00000402219	NM_005633.3	1242	agt/aAgt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	252	489	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692893	89692893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	348	605	0	ENST00000371953.3:c.377C>A	p.Ala126Asp	p.A126D	ENST00000371953	NM_000314.4	126	gCt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	891	961	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																														
TOP1	0	MSKCC	GRCh37	20	39741455	39741455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	217	704	1	ENST00000361337.2:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000361337	NM_003286.2	448	Cgg/Tgg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	447	643	1	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	447	643	1	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	447	643	1	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
NUF2	0	MSKCC	GRCh37	1	163313578	163313578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	111	517	0	ENST00000271452.3:c.725C>G	p.Thr242Arg	p.T242R	ENST00000271452	NM_145697.2	242	aCa/aGa																																																																														
ARID2	0	MSKCC	GRCh37	12	46233138	46233138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	138	449	0	ENST00000334344.6:c.1357G>C	p.Asp453His	p.D453H	ENST00000334344	NM_152641.2	453	Gat/Cat																																																																														
MLL2	0	MSKCC	GRCh37	12	49416099	49416099	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	523	720	0	ENST00000301067.7:c.16376A>T	p.His5459Leu	p.H5459L	ENST00000301067	NM_003482.3	5459	cAt/cTt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748219	43748219	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	266	1037	0	ENST00000382044.4:c.2587A>T	p.Lys863Ter	p.K863*	ENST00000382044	NM_001141980.1	863	Aaa/Taa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81934308	81934308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	494	851	0	ENST00000359376.3:c.1285C>A	p.Leu429Met	p.L429M	ENST00000359376	NM_002661.3	429	Ctg/Atg																																																																														
AURKB	9212	MSKCC	GRCh37	17	8110129	8110130	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs745673717		P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	236	778	1	ENST00000585124.1:c.475dup	p.Arg159ProfsTer15	p.R159Pfs*15	ENST00000585124	NM_004217.3	159	cgc/cCgc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39623721	39623721	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	186	638	0	ENST00000262039.4:c.2128A>T	p.Ser710Cys	p.S710C	ENST00000262039	NM_002647.2	710	Agt/Tgt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2193686	2193686	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	156	863	1	ENST00000398665.3:c.494-2A>T		p.X165_splice	ENST00000398665	NM_032482.2	165																																																																															
BRD4	0	MSKCC	GRCh37	19	15354080	15354080	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	48	748	1	ENST00000263377.2:c.2800C>T	p.Gln934Ter	p.Q934*	ENST00000263377	NM_058243.2	934	Cag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47098762	47098762	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	487	910	0	ENST00000409792.3:c.6512A>T	p.Tyr2171Phe	p.Y2171F	ENST00000409792	NM_014159.6	2171	tAt/tTt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134884872	134884872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	1065	685	3	ENST00000398015.3:c.1648G>T	p.Val550Phe	p.V550F	ENST00000398015	NM_004441.4	550	Gtc/Ttc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66242724	66242724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	171	710	0	ENST00000273854.3:c.1848C>A	p.Ser616Arg	p.S616R	ENST00000273854	NM_004439.5	616	agC/agA																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38172960	38172960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	275	973	0	ENST00000317025.8:c.2089A>G	p.Met697Val	p.M697V	ENST00000317025	NM_023034.1	697	Atg/Gtg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44918522	44918522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	325	256	0	ENST00000377967.4:c.1005G>A	p.Met335Ile	p.M335I	ENST00000377967	NM_021140.2	335	atG/atA																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52714672	52714672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	119	825	4	ENST00000322088.6:c.430C>T	p.Arg144Cys	p.R144C	ENST00000322088	NM_014225.5	144	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	216	937	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0015244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	197	730	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	126	517	1	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																																																														
PTEN	0	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	167	700	0	ENST00000371953.3:c.494G>A	p.Gly165Glu	p.G165E	ENST00000371953	NM_000314.4	165	gGa/gAa																																																																														
IRS1	0	MSKCC	GRCh37	2	227662086	227662086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	256	863	1	ENST00000305123.5:c.1369C>T	p.Arg457Cys	p.R457C	ENST00000305123	NM_005544.2	457	Cgc/Tgc																																																																														
MTOR	0	MSKCC	GRCh37	1	11186783	11186785	+	missense_variant	Missense_Mutation	ONP	GGC	GGC	TGG			P-0015244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	213	886	1	ENST00000361445.4:c.6420_6422delinsCCA	p.Pro2141Gln	p.P2141Q	ENST00000361445	NM_004958.3	2140	gtGCCa/gtCCAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	171	791	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	136	870	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TET1	0	MSKCC	GRCh37	10	70333715	70333715	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	62	625	0	ENST00000373644.4:c.1620A>C	p.Lys540Asn	p.K540N	ENST00000373644	NM_030625.2	540	aaA/aaC																																																																														
KDM5C	0	MSKCC	GRCh37	X	53224428	53224428	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	119	735	0	ENST00000375401.3:c.3285C>A	p.Cys1095Ter	p.C1095*	ENST00000375401	NM_004187.3	1095	tgC/tgA																																																																														
TRAF7	0	MSKCC	GRCh37	16	2218111	2218111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	329	1094	0	ENST00000326181.6:c.173G>A	p.Arg58Lys	p.R58K	ENST00000326181	NM_032271.2	58	aGg/aAg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81888108	81888108	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	44	783	0	ENST00000359376.3:c.253G>C	p.Ala85Pro	p.A85P	ENST00000359376	NM_002661.3	85	Gca/Cca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	282	931	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7982806	7982806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	302	1056	4	ENST00000319144.4:c.979G>A	p.Val327Met	p.V327M	ENST00000319144	NM_001139.2	327	Gtg/Atg																																																																														
ERF	0	MSKCC	GRCh37	19	42754086	42754086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	165	755	0	ENST00000222329.4:c.266A>G	p.Tyr89Cys	p.Y89C	ENST00000222329	NM_006494.2	89	tAt/tGt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099439	157099439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	94	507	3	ENST00000346085.5:c.376C>T	p.Gln126Ter	p.Q126*	ENST00000346085	NM_020732.3	126	Cag/Tag																																																																														
MLL3	0	MSKCC	GRCh37	7	151933019	151933019	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	14	130	0	ENST00000262189.6:c.2653-1G>A		p.X885_splice	ENST00000262189	NM_170606.2	885																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	319	849	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99156051	99156051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	397	861	2	ENST00000074304.5:c.731G>A	p.Arg244Gln	p.R244Q	ENST00000074304	NM_001134224.1	244	cGg/cAg																																																																														
NEGR1	0	MSKCC	GRCh37	1	72163795	72163795	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	256	822	0	ENST00000357731.5:c.563T>C	p.Leu188Ser	p.L188S	ENST00000357731	NM_173808.2	188	tTg/tCg																																																																														
NEGR1	0	MSKCC	GRCh37	1	72748059	72748059	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	348	872	0	ENST00000357731.5:c.119T>C	p.Phe40Ser	p.F40S	ENST00000357731	NM_173808.2	40	tTc/tCc																																																																														
BCL10	0	MSKCC	GRCh37	1	85736387	85736387	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	274	608	0	ENST00000370580.1:c.260G>C	p.Arg87Pro	p.R87P	ENST00000370580	NM_003921.4	87	cGg/cCg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530157	212530157	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	121	640	0	ENST00000342788.4:c.1762A>C	p.Asn588His	p.N588H	ENST00000342788	NM_005235.2	588	Aac/Cac																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812207	212812207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	161	606	0	ENST00000342788.4:c.369C>A	p.Tyr123Ter	p.Y123*	ENST00000342788	NM_005235.2	123	taC/taA																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467931	66467931	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	120	668	0	ENST00000273854.3:c.338T>C	p.Leu113Pro	p.L113P	ENST00000273854	NM_004439.5	113	cTt/cCt																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138198347	138198347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	300	641	0	ENST00000237289.4:c.940G>A	p.Val314Ile	p.V314I	ENST00000237289	NM_001270507.1	314	Gtc/Atc																																																																														
PREX2	0	MSKCC	GRCh37	8	69021760	69021760	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	437	1031	0	ENST00000288368.4:c.3048A>C	p.Lys1016Asn	p.K1016N	ENST00000288368	NM_024870.2	1016	aaA/aaC																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	72	1151	4	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	219	473	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097621	27097622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	59	870	0	ENST00000324856.7:c.3216dup	p.Trp1073MetfsTer32	p.W1073Mfs*32	ENST00000324856	NM_006015.4	1070	-/A																																																																														
RHOA	0	MSKCC	GRCh37	3	49405953	49405953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	206	1063	0	ENST00000418115.1:c.185G>A	p.Gly62Glu	p.G62E	ENST00000418115	NM_001664.2	62	gGg/gAg																																																																														
PAX5	0	MSKCC	GRCh37	9	37020768	37020769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	144	984	1	ENST00000358127.4:c.76dupG	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gtt/gGtt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	223	560	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139411768	139411768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201768800		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	47	1203	1	ENST00000277541.6:c.1511G>A	p.Arg504His	p.R504H	ENST00000277541	NM_017617.3	504	cGc/cAc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	73	830	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
MLH1	0	MSKCC	GRCh37	3	37038192	37038192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	215	492	0	ENST00000231790.2:c.199G>A	p.Gly67Arg	p.G67R	ENST00000231790	NM_000249.3	67	Ggg/Agg																																																																														
BRD4	0	MSKCC	GRCh37	19	15354008	15354008	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	32	403	3	ENST00000263377.2:c.2872del	p.Leu958CysfsTer110	p.L958Cfs*110	ENST00000263377	NM_058243.2	958	Ctg/tg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	146	732	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	140	694	7	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914478	32914478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	49	931	0	ENST00000380152.3:c.5986G>A	p.Ala1996Thr	p.A1996T	ENST00000380152		1996	Gca/Aca																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	11	167	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																																																														
CDK12	0	MSKCC	GRCh37	17	37687306	37687306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	90	828	0	ENST00000447079.4:c.4210C>T	p.Arg1404Cys	p.R1404C	ENST00000447079	NM_015083.1	1404	Cgt/Tgt																																																																														
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	41	829	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																														
POLE	0	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	111	916	0	ENST00000320574.5:c.6088delG	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																																																														
BAP1	0	MSKCC	GRCh37	3	52440882	52440882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	50	869	3	ENST00000460680.1:c.622C>T	p.Arg208Trp	p.R208W	ENST00000460680	NM_004656.3	208	Cgg/Tgg																																																																														
RB1	0	MSKCC	GRCh37	13	48954342	48954342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	56	525	0	ENST00000267163.4:c.1463C>T	p.Ala488Val	p.A488V	ENST00000267163	NM_000321.2	488	gCg/gTg																																																																														
TSHR	0	MSKCC	GRCh37	14	81609934	81609934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	26	419	0	ENST00000298171.2:c.1532C>T	p.Thr511Met	p.T511M	ENST00000298171	NM_000369.2	511	aCg/aTg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856389	111856389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	65	232	0	ENST00000341259.2:c.440G>A	p.Arg147His	p.R147H	ENST00000341259	NM_005475.2	147	cGc/cAc																																																																														
MSI1	0	MSKCC	GRCh37	12	120794767	120794767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	108	1164	0	ENST00000257552.2:c.590G>A	p.Arg197Gln	p.R197Q	ENST00000257552	NM_002442.3	197	cGg/cAg																																																																														
CDK8	0	MSKCC	GRCh37	13	26970441	26970441	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	36	525	0	ENST00000381527.3:c.815del	p.Lys272ArgfsTer8	p.K272Rfs*8	ENST00000381527	NM_001260.1	270	atA/at																																																																														
AXIN1	0	MSKCC	GRCh37	16	348011	348011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	174	1088	2	ENST00000262320.3:c.1495G>A	p.Val499Met	p.V499M	ENST00000262320	NM_003502.3	499	Gtg/Atg																																																																														
TRAF7	0	MSKCC	GRCh37	16	2221351	2221351	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	56	877	0	ENST00000326181.6:c.435del	p.Cys146ValfsTer11	p.C146Vfs*11	ENST00000326181	NM_032271.2	145	acG/ac																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346839	89346847	+	inframe_deletion	In_Frame_Del	DEL	GACGTCCTC	GACGTCCTC	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	12	393	0	ENST00000301030.4:c.6103_6111del	p.Glu2035_Val2037del	p.E2035_V2037del	ENST00000301030	NM_001256183.1	2035	GAGGACGTC/-																																																																														
FANCA	0	MSKCC	GRCh37	16	89877363	89877363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	83	717	1	ENST00000389301.3:c.400C>A	p.Pro134Thr	p.P134T	ENST00000389301	NM_000135.2	134	Cct/Act																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11130337	11130337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	89	1008	1	ENST00000344626.4:c.2576C>T	p.Thr859Met	p.T859M	ENST00000344626	NM_003072.3	859	aCg/aTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291861	15291861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	80	1072	1	ENST00000263388.2:c.2905C>T	p.Arg969Trp	p.R969W	ENST00000263388	NM_000435.2	969	Cgg/Tgg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302669	15302669	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	40	1101	0	ENST00000263388.2:c.689del	p.Gly230ValfsTer6	p.G230Vfs*6	ENST00000263388	NM_000435.2	230	gGt/gt																																																																														
MLL4	0	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	38	943	2	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
POLD1	0	MSKCC	GRCh37	19	50909674	50909674	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199700312		P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	71	978	0	ENST00000440232.2:c.1394G>A	p.Arg465Gln	p.R465Q	ENST00000440232	NM_002691.3	465	cGg/cAg																																																																														
ALK	0	MSKCC	GRCh37	2	29419708	29419708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	34	744	0	ENST00000389048.3:c.4092G>T	p.Gln1364His	p.Q1364H	ENST00000389048	NM_004304.4	1364	caG/caT																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022809	31022809	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	44	769	0	ENST00000375687.4:c.2294T>G	p.Leu765Arg	p.L765R	ENST00000375687	NM_015338.5	765	cTg/cGg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643390	52643390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	80	816	0	ENST00000394830.3:c.2506C>T	p.Arg836Trp	p.R836W	ENST00000394830	NM_018313.4	836	Cgg/Tgg																																																																														
FAT1	0	MSKCC	GRCh37	4	187530381	187530381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	135	576	2	ENST00000441802.2:c.10162G>A	p.Val3388Ile	p.V3388I	ENST00000441802	NM_005245.3	3388	Gtc/Atc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31468080	31468080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	185	993	8	ENST00000344624.3:c.2332C>T	p.Arg778Cys	p.R778C	ENST00000344624		778	Cgc/Tgc																																																																														
APC	0	MSKCC	GRCh37	5	112178831	112178831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	30	620	0	ENST00000257430.4:c.7540A>G	p.Thr2514Ala	p.T2514A	ENST00000257430	NM_000038.5	2514	Act/Gct																																																																														
IRF4	0	MSKCC	GRCh37	6	395000	395001	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	123	721	0	ENST00000380956.4:c.402dup	p.Gly135ArgfsTer77	p.G135Rfs*77	ENST00000380956	NM_001195286.1	132	-/A																																																																														
TAP1	0	MSKCC	GRCh37	6	32814930	32814930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	227	969	2	ENST00000354258.4:c.2135C>T	p.Ala712Val	p.A712V	ENST00000354258	NM_000593.5	712	gCg/gTg																																																																														
PNRC1	0	MSKCC	GRCh37	6	89791059	89791059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	10	78	0	ENST00000336032.3:c.446C>T	p.Pro149Leu	p.P149L	ENST00000336032	NM_006813.2	149	cCg/cTg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982087	93982087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	41	729	1	ENST00000369303.4:c.1378G>A	p.Glu460Lys	p.E460K	ENST00000369303	NM_004440.3	460	Gag/Aag																																																																														
ESR1	0	MSKCC	GRCh37	6	152129277	152129277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	79	910	5	ENST00000206249.3:c.230G>A	p.Gly77Asp	p.G77D	ENST00000206249	NM_000125.3	77	gGc/gAc																																																																														
PMS2	0	MSKCC	GRCh37	7	6026910	6026910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	13	213	0	ENST00000265849.7:c.1486C>T	p.His496Tyr	p.H496Y	ENST00000265849	NM_000535.5	496	Cac/Tac																																																																														
DUSP4	0	MSKCC	GRCh37	8	29194905	29194905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	178	995	1	ENST00000240100.2:c.823C>T	p.Arg275Cys	p.R275C	ENST00000240100	NM_001394.6	275	Cgc/Tgc																																																																														
TRAF2	0	MSKCC	GRCh37	9	139811005	139811005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	106	1036	0	ENST00000247668.2:c.616G>A	p.Val206Ile	p.V206I	ENST00000247668	NM_021138.3	206	Gtc/Atc																																																																														
AR	0	MSKCC	GRCh37	X	66765712	66765712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	51	646	1	ENST00000374690.3:c.724G>A	p.Ala242Thr	p.A242T	ENST00000374690	NM_000044.3	242	Gca/Aca																																																																														
BTK	0	MSKCC	GRCh37	X	100625010	100625010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	165	388	0	ENST00000308731.7:c.367C>T	p.Arg123Trp	p.R123W	ENST00000308731	NM_000061.2	123	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	163	891	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	251	1312	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138382788	138382788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	130	911	0	ENST00000289153.2:c.2756A>G	p.Asp919Gly	p.D919G	ENST00000289153	NM_006219.2	919	gAc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	81	823	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RFWD2	0	MSKCC	GRCh37	1	175956129	175956129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	51	778	0	ENST00000367669.3:c.2083G>A	p.Asp695Asn	p.D695N	ENST00000367669	NM_022457.5	695	Gat/Aat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72923650	72923650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	62	728	0	ENST00000268489.5:c.3428G>T	p.Arg1143Met	p.R1143M	ENST00000268489	NM_006885.3	1143	aGg/aTg																																																																														
STK11	0	MSKCC	GRCh37	19	1221340	1221340	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	92	754	0	ENST00000326873.7:c.862+1G>C		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																															
KEAP1	0	MSKCC	GRCh37	19	10610129	10610132	+	frameshift_variant	Frame_Shift_Del	DEL	ATCT	ATCT	-			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	113	932	0	ENST00000171111.5:c.578_581del	p.Gln193LeufsTer36	p.Q193Lfs*36	ENST00000171111	NM_203500.1	193	cAGATt/ct																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266605	198266605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	33	587	2	ENST00000335508.6:c.2231C>T	p.Ala744Val	p.A744V	ENST00000335508	NM_012433.2	744	gCt/gTt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143326475	143326475	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	26	510	0	ENST00000262992.4:c.139T>C	p.Cys47Arg	p.C47R	ENST00000262992	NM_001101669.1	47	Tgc/Cgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187518150	187518150	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	59	712	0	ENST00000441802.2:c.12544G>T	p.Gly4182Ter	p.G4182*	ENST00000441802	NM_005245.3	4182	Gga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187518174	187518174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	53	612	0	ENST00000441802.2:c.12520C>G	p.Pro4174Ala	p.P4174A	ENST00000441802	NM_005245.3	4174	Ccg/Gcg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341130	8341130	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	54	813	0	ENST00000356435.5:c.5086G>T	p.Gly1696Ter	p.G1696*	ENST00000356435		1696	Gga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	115	706	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	177	738	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226845	2226845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	161	501	2	ENST00000398665.3:c.4325C>T	p.Pro1442Leu	p.P1442L	ENST00000398665	NM_032482.2	1442	cCc/cTc																																																																														
NF1	0	MSKCC	GRCh37	17	29562628	29562628	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	125	560	0	ENST00000358273.4:c.3709-1G>A		p.X1237_splice	ENST00000358273	NM_001042492.2	1237																																																																															
EGFR	0	MSKCC	GRCh37	7	55211050	55211050	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17289589		P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	182	832	3	ENST00000275493.2:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000275493	NM_005228.3	98	cGa/cAa																																																																														
MLL2	0	MSKCC	GRCh37	12	49434090	49434090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	163	863	0	ENST00000301067.7:c.7463C>T	p.Ser2488Leu	p.S2488L	ENST00000301067	NM_003482.3	2488	tCg/tTg																																																																														
NF1	0	MSKCC	GRCh37	17	29679366	29679366	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	194	730	0	ENST00000358273.4:c.7549C>T	p.Arg2517Ter	p.R2517*	ENST00000358273	NM_001042492.2	2517	Cga/Tga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713470	40713470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	165	918	2	ENST00000373198.4:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000373198	NM_133170.3	1349	Cgt/Tgt																																																																														
SPEN	0	MSKCC	GRCh37	1	16257278	16257278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	213	963	0	ENST00000375759.3:c.4543C>T	p.His1515Tyr	p.H1515Y	ENST00000375759	NM_015001.2	1515	Cat/Tat																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100109	27100109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	201	839	2	ENST00000324856.7:c.3905C>T	p.Thr1302Ile	p.T1302I	ENST00000324856	NM_006015.4	1302	aCt/aTt																																																																														
SESN3	0	MSKCC	GRCh37	11	94923091	94923091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	198	787	0	ENST00000536441.1:c.377A>G	p.Asn126Ser	p.N126S	ENST00000536441	NM_144665.3	126	aAc/aGc																																																																														
ATM	0	MSKCC	GRCh37	11	108128304	108128304	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	183	675	0	ENST00000278616.4:c.2347T>A	p.Cys783Ser	p.C783S	ENST00000278616	NM_000051.3	783	Tgt/Agt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18691191	18691191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	122	596	0	ENST00000266497.5:c.3302G>C	p.Arg1101Pro	p.R1101P	ENST00000266497		1101	cGt/cCt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18800939	18800939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	123	621	1	ENST00000266497.5:c.4315C>T	p.Pro1439Ser	p.P1439S	ENST00000266497		1439	Cca/Tca																																																																														
ARID2	0	MSKCC	GRCh37	12	46231122	46231122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	112	593	0	ENST00000334344.6:c.1042G>A	p.Asp348Asn	p.D348N	ENST00000334344	NM_152641.2	348	Gat/Aat																																																																														
ARID2	0	MSKCC	GRCh37	12	46244652	46244652	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	214	846	1	ENST00000334344.6:c.2746C>T	p.Gln916Ter	p.Q916*	ENST00000334344	NM_152641.2	916	Caa/Taa																																																																														
MLL2	0	MSKCC	GRCh37	12	49445909	49445910	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	315	1301	5	ENST00000301067.7:c.1556_1557delinsTT	p.Pro519Leu	p.P519L	ENST00000301067	NM_003482.3	519	cCC/cTT																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910653	32910653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	149	693	0	ENST00000380152.3:c.2161C>T	p.Pro721Ser	p.P721S	ENST00000380152		721	Cca/Tca																																																																														
PRKD1	0	MSKCC	GRCh37	14	30093464	30093465	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	98	448	4	ENST00000331968.5:c.1799-1_1799delinsAA		p.X600_splice	ENST00000331968	NM_002742.2	600																																																																															
NKX2-1	0	MSKCC	GRCh37	14	36986625	36986625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	88	312	0	ENST00000354822.5:c.1064G>A	p.Gly355Asp	p.G355D	ENST00000354822	NM_001079668.2	355	gGc/gAc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43771663	43771663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	220	1014	0	ENST00000382044.4:c.720C>A	p.Asp240Glu	p.D240E	ENST00000382044	NM_001141980.1	240	gaC/gaA																																																																														
SLX4	0	MSKCC	GRCh37	16	3639055	3639056	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	137	828	2	ENST00000294008.3:c.4583_4584delinsTT	p.Ala1528Val	p.A1528V	ENST00000294008	NM_032444.2	1528	gCC/gTT																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858687	9858687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	134	594	0	ENST00000330684.3:c.2714C>T	p.Ser905Phe	p.S905F	ENST00000330684	NM_001134407.1	905	tCc/tTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858772	9858772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	72	326	0	ENST00000330684.3:c.2629G>A	p.Glu877Lys	p.E877K	ENST00000330684	NM_001134407.1	877	Gaa/Aaa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862946	9862946	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	138	668	0	ENST00000330684.3:c.2357G>A	p.Gly786Asp	p.G786D	ENST00000330684	NM_001134407.1	786	gGt/gAt																																																																														
NUP93	0	MSKCC	GRCh37	16	56864462	56864462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	207	839	0	ENST00000308159.5:c.950C>T	p.Pro317Leu	p.P317L	ENST00000308159	NM_014669.4	317	cCt/cTt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81990468	81990468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	139	798	0	ENST00000359376.3:c.3739G>A	p.Glu1247Lys	p.E1247K	ENST00000359376	NM_002661.3	1247	Gag/Aag																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7984445	7984445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	256	875	1	ENST00000319144.4:c.413G>A	p.Arg138Lys	p.R138K	ENST00000319144	NM_001139.2	138	aGa/aAa																																																																														
FLCN	0	MSKCC	GRCh37	17	17125816	17125816	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	194	821	0	ENST00000285071.4:c.778T>C	p.Trp260Arg	p.W260R	ENST00000285071	NM_144997.5	260	Tgg/Cgg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244231	41244231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	169	788	1	ENST00000357654.3:c.3317C>T	p.Pro1106Leu	p.P1106L	ENST00000357654	NM_007294.3	1106	cCt/cTt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244528	41244528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	153	834	0	ENST00000357654.3:c.3020C>T	p.Ser1007Leu	p.S1007L	ENST00000357654	NM_007294.3	1007	tCa/tTa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2191141	2191141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	200	1023	2	ENST00000398665.3:c.395C>T	p.Ser132Phe	p.S132F	ENST00000398665	NM_032482.2	132	tCc/tTc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2193765	2193765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	216	872	0	ENST00000398665.3:c.571C>T	p.Pro191Ser	p.P191S	ENST00000398665	NM_032482.2	191	Ccg/Tcg																																																																														
INSR	0	MSKCC	GRCh37	19	7172370	7172370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	154	792	0	ENST00000302850.5:c.1199C>T	p.Ser400Phe	p.S400F	ENST00000302850	NM_000208.2	400	tCc/tTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11113819	11113819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	164	812	0	ENST00000344626.4:c.1927C>T	p.Leu643Phe	p.L643F	ENST00000344626	NM_003072.3	643	Ctc/Ttc																																																																														
MLL4	0	MSKCC	GRCh37	19	36221642	36221642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	232	1028	2	ENST00000222270.7:c.5311C>T	p.Arg1771Trp	p.R1771W	ENST00000222270	NM_014727.1	1771	Cgg/Tgg																																																																														
ALK	0	MSKCC	GRCh37	2	29754929	29754929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	198	754	0	ENST00000389048.3:c.1006C>T	p.Pro336Ser	p.P336S	ENST00000389048	NM_004304.4	336	Ccg/Tcg																																																																														
EPAS1	0	MSKCC	GRCh37	2	46607618	46607618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	243	1053	0	ENST00000263734.3:c.1807C>T	p.Pro603Ser	p.P603S	ENST00000263734	NM_001430.4	603	Ccc/Tcc																																																																														
PMS1	0	MSKCC	GRCh37	2	190670463	190670463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	139	536	0	ENST00000441310.2:c.401C>T	p.Pro134Leu	p.P134L	ENST00000441310	NM_000534.4	134	cCt/cTt																																																																														
NCOA3	0	MSKCC	GRCh37	20	46275847	46275847	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	197	838	0	ENST00000371998.3:c.3283T>G	p.Phe1095Val	p.F1095V	ENST00000371998		1095	Ttc/Gtc																																																																														
PRKCI	0	MSKCC	GRCh37	3	169999008	169999008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	120	536	0	ENST00000295797.4:c.937C>T	p.Pro313Ser	p.P313S	ENST00000295797	NM_002740.5	313	Cct/Tct																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920067	1920068	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	207	894	0	ENST00000382891.5:c.1127_1128delinsTT	p.Ser376Phe	p.S376F	ENST00000382891	NM_133335.3	376	tCC/tTT																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41750596	41750596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	177	741	1	ENST00000226382.2:c.32C>T	p.Ser11Phe	p.S11F	ENST00000226382	NM_003924.3	11	tCc/tTc																																																																														
KDR	0	MSKCC	GRCh37	4	55961097	55961097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	271	993	0	ENST00000263923.4:c.2843G>A	p.Gly948Glu	p.G948E	ENST00000263923	NM_002253.2	948	gGg/gAg																																																																														
KDR	0	MSKCC	GRCh37	4	55970967	55970967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	170	851	1	ENST00000263923.4:c.1830G>A	p.Trp610Ter	p.W610*	ENST00000263923	NM_002253.2	610	tgG/tgA																																																																														
FBXW7	0	MSKCC	GRCh37	4	153268098	153268098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	102	425	0	ENST00000281708.4:c.710G>A	p.Trp237Ter	p.W237*	ENST00000281708	NM_033632.3	237	tGg/tAg																																																																														
TERT	0	MSKCC	GRCh37	5	1253896	1253896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	139	929	1	ENST00000310581.5:c.3346G>A	p.Glu1116Lys	p.E1116K	ENST00000310581	NM_198253.2	1116	Gag/Aag																																																																														
IL7R	0	MSKCC	GRCh37	5	35876454	35876454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	209	787	1	ENST00000303115.3:c.1246C>A	p.Pro416Thr	p.P416T	ENST00000303115	NM_002185.3	416	Ccc/Acc																																																																														
MSH3	0	MSKCC	GRCh37	5	80057472	80057472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	122	554	0	ENST00000265081.6:c.1871G>T	p.Gly624Val	p.G624V	ENST00000265081	NM_002439.4	624	gGa/gTa																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449471	149449471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	164	753	0	ENST00000286301.3:c.1475G>A	p.Gly492Glu	p.G492E	ENST00000286301	NM_005211.3	492	gGg/gAg																																																																														
FLT4	0	MSKCC	GRCh37	5	180037013	180037013	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	145	773	1	ENST00000261937.6:c.3699G>A	p.Trp1233Ter	p.W1233*	ENST00000261937	NM_182925.4	1233	tgG/tgA																																																																														
MDC1	0	MSKCC	GRCh37	6	30671253	30671253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	226	826	0	ENST00000376406.3:c.5624G>A	p.Arg1875Lys	p.R1875K	ENST00000376406	NM_014641.2	1875	aGa/aAa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32178698	32178698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	254	1012	0	ENST00000375023.3:c.2696C>T	p.Ser899Phe	p.S899F	ENST00000375023	NM_004557.3	899	tCc/tTc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188980	32188980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	195	944	0	ENST00000375023.3:c.574G>A	p.Glu192Lys	p.E192K	ENST00000375023	NM_004557.3	192	Gaa/Aaa																																																																														
TAP2	0	MSKCC	GRCh37	6	32798435	32798435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	503	1018	1	ENST00000374899.4:c.1421C>T	p.Ser474Phe	p.S474F	ENST00000374899	NM_018833.2	474	tCc/tTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120731	94120731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	103	616	0	ENST00000369303.4:c.320G>A	p.Arg107Lys	p.R107K	ENST00000369303	NM_004440.3	107	aGg/aAg																																																																														
MET	0	MSKCC	GRCh37	7	116395517	116395517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	152	691	0	ENST00000397752.3:c.1810C>T	p.Leu604Phe	p.L604F	ENST00000397752	NM_000245.2	604	Ctc/Ttc																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538946	23538946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	212	804	0	ENST00000380871.4:c.493G>A	p.Glu165Lys	p.E165K	ENST00000380871	NM_006167.3	165	Gag/Aag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521505	8521505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	189	869	0	ENST00000356435.5:c.733C>T	p.His245Tyr	p.H245Y	ENST00000356435		245	Cat/Tat																																																																														
AR	0	MSKCC	GRCh37	X	66765632	66765632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	179	1139	2	ENST00000374690.3:c.644C>T	p.Ser215Leu	p.S215L	ENST00000374690	NM_000044.3	215	tCg/tTg																																																																														
ATRX	0	MSKCC	GRCh37	X	76778811	76778812	+	missense_variant	Missense_Mutation	DNP	AG	AG	CA			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	207	899	2	ENST00000373344.5:c.6767_6768delinsTG	p.Ser2256Leu	p.S2256L	ENST00000373344	NM_000489.3	2256	tCT/tTG																																																																														
ATRX	0	MSKCC	GRCh37	X	76849248	76849248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	177	767	2	ENST00000373344.5:c.6028G>A	p.Asp2010Asn	p.D2010N	ENST00000373344	NM_000489.3	2010	Gat/Aat																																																																														
ATRX	0	MSKCC	GRCh37	X	76937518	76937518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	156	741	0	ENST00000373344.5:c.3230C>T	p.Ser1077Leu	p.S1077L	ENST00000373344	NM_000489.3	1077	tCa/tTa																																																																														
STAG2	0	MSKCC	GRCh37	X	123191766	123191766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	178	807	0	ENST00000218089.9:c.1355G>A	p.Gly452Glu	p.G452E	ENST00000218089	NM_001042749.1	452	gGa/gAa																																																																														
STAG2	0	MSKCC	GRCh37	X	123200039	123200039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	115	414	2	ENST00000218089.9:c.2111C>T	p.Ser704Leu	p.S704L	ENST00000218089	NM_001042749.1	704	tCa/tTa																																																																														
STAG2	0	MSKCC	GRCh37	X	123217393	123217393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	127	628	1	ENST00000218089.9:c.3047G>A	p.Arg1016Lys	p.R1016K	ENST00000218089	NM_001042749.1	1016	aGa/aAa																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123504102	123504102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	148	684	0	ENST00000371139.4:c.278G>A	p.Gly93Asp	p.G93D	ENST00000371139	NM_001114937.2	93	gGc/gAc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858079	152858105	+	inframe_deletion	In_Frame_Del	DEL	GCCCCATGGTAGCTGTCCCGCAGCAGG	GCCCCATGGTAGCTGTCCCGCAGCAGG	-			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	136	786	0	ENST00000406277.2:c.510_536delCCTGCTGCGGGACAGCTACCATGGGGC	p.Leu172_Leu180del	p.L172_L180del	ENST00000406277	NM_152274.4	170	gcCCTGCTGCGGGACAGCTACCATGGGGCg/gcg																																																																														
ARID2	0	MSKCC	GRCh37	12	46245621	46245623	+	frameshift_variant	Frame_Shift_Del	DEL	GGT	GGT	A			P-0015257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	122	590	0	ENST00000334344.6:c.3715_3717delinsA	p.Gly1239ArgfsTer2	p.G1239Rfs*2	ENST00000334344	NM_152641.2	1239	GGT/A																																																																														
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0015258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	467	1105	2	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
AR	0	MSKCC	GRCh37	X	66765072	66765072	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	374	1084	0	ENST00000374690.3:c.84G>C	p.Gln28His	p.Q28H	ENST00000374690	NM_000044.3	28	caG/caC																																																																														
TMEM127	0	MSKCC	GRCh37	2	96920582	96920582	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	170	542	0	ENST00000258439.3:c.398A>G	p.His133Arg	p.H133R	ENST00000258439	NM_001193304.2	133	cAt/cGt																																																																														
ATRX	0	MSKCC	GRCh37	X	76944353	76944354	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0015258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	359	903	0	ENST00000373344.5:c.551_552del	p.Asp184ValfsTer4	p.D184Vfs*4	ENST00000373344	NM_000489.3	184	gAT/g																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0015260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	193	721	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
MLL2	0	MSKCC	GRCh37	12	49420938	49420941	+	frameshift_variant	Frame_Shift_Del	DEL	GGGA	GGGA	-			P-0015260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	164	720	2	ENST00000301067.7:c.14808_14811del	p.Thr4938AsnfsTer56	p.T4938Nfs*56	ENST00000301067	NM_003482.3	4936	ctTCCC/ct																																																																														
KIT	0	MSKCC	GRCh37	4	55593621	55593660	+	protein_altering_variant	In_Frame_Del	DEL	ATAAATGGAAACAATTATGTTTACATAGACCCAACACAAC	ATAAATGGAAACAATTATGTTTACATAGACCCAACACAAC	T			P-0015260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	165	678	0	ENST00000288135.5:c.1687_1726delinsT	p.Ile563_Leu576delinsPhe	p.I563_L576delinsF	ENST00000288135	NM_000222.2	563	ATAAATGGAAACAATTATGTTTACATAGACCCAACACAACtt/Ttt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	95	732	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	358	616	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	233	713	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	718	1322	2	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398254	25398254	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	259	890	0	ENST00000256078.4:c.65A>T	p.Gln22Leu	p.Q22L	ENST00000256078	NM_033360.2	22	cAg/cTg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59937157	59937157	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	100	585	0	ENST00000259008.2:c.205G>A	p.Gly69Arg	p.G69R	ENST00000259008	NM_032043.2	69	Ggg/Agg																																																																														
FLT4	0	MSKCC	GRCh37	5	180045898	180045898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	68	682	0	ENST00000261937.6:c.2873G>C	p.Gly958Ala	p.G958A	ENST00000261937	NM_182925.4	958	gGa/gCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	39	822	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577101	7577101	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	627	681	0	ENST00000269305.4:c.837del	p.Arg280GlufsTer65	p.R280Efs*65	ENST00000269305	NM_001126112.2	279	ggG/gg																																																																														
MTOR	0	MSKCC	GRCh37	1	11300599	11300599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	254	421	0	ENST00000361445.4:c.1547C>A	p.Ala516Asp	p.A516D	ENST00000361445	NM_004958.3	516	gCc/gAc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462024	120462024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	265	418	0	ENST00000256646.2:c.5692G>T	p.Asp1898Tyr	p.D1898Y	ENST00000256646	NM_024408.3	1898	Gat/Tat																																																																														
RB1	0	MSKCC	GRCh37	13	48953749	48953749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	108	263	0	ENST00000267163.4:c.1352G>C	p.Arg451Pro	p.R451P	ENST00000267163	NM_000321.2	451	cGc/cCc																																																																														
IRS2	0	MSKCC	GRCh37	13	110435483	110435483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	497	812	1	ENST00000375856.3:c.2918C>T	p.Ser973Phe	p.S973F	ENST00000375856	NM_003749.2	973	tCt/tTt																																																																														
NCOA3	0	MSKCC	GRCh37	20	46281180	46281180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	306	486	0	ENST00000371998.3:c.3977G>A	p.Gly1326Asp	p.G1326D	ENST00000371998		1326	gGt/gAt																																																																														
MET	0	MSKCC	GRCh37	7	116339280	116339280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	221	355	0	ENST00000397752.3:c.142G>A	p.Ala48Thr	p.A48T	ENST00000397752	NM_000245.2	48	Gcg/Acg																																																																														
ATRX	0	MSKCC	GRCh37	X	76954118	76954118	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	111	275	0	ENST00000373344.5:c.134-1G>A		p.X45_splice	ENST00000373344	NM_000489.3	45																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	34	567	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	13	332	0	ENST00000371953.3:c.494G>A	p.Gly165Glu	p.G165E	ENST00000371953	NM_000314.4	165	gGa/gAa																																																																														
POLD1	0	MSKCC	GRCh37	19	50919734	50919734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	331	652	1	ENST00000440232.2:c.2902C>T	p.Arg968Cys	p.R968C	ENST00000440232	NM_002691.3	968	Cgc/Tgc																																																																														
FH	0	MSKCC	GRCh37	1	241667473	241667473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	31	241	0	ENST00000366560.3:c.977G>A	p.Gly326Glu	p.G326E	ENST00000366560	NM_000143.3	326	gGa/gAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717637	89717637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	47	355	0	ENST00000371953.3:c.662A>G	p.Lys221Arg	p.K221R	ENST00000371953	NM_000314.4	221	aAg/aGg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061115	38061115	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	80	215	0	ENST00000250448.2:c.874G>T	p.Glu292Ter	p.E292*	ENST00000250448	NM_004496.3	292	Gag/Tag																																																																														
DROSHA	0	MSKCC	GRCh37	5	31495482	31495482	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0015273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	199	418	0	ENST00000344624.3:c.1669-3C>G		p.X557_splice	ENST00000344624		557																																																																															
ROS1	0	MSKCC	GRCh37	6	117687422	117687422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015276-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	45	266	0	ENST00000368508.3:c.2629G>A	p.Ala877Thr	p.A877T	ENST00000368508	NM_002944.2	877	Gcc/Acc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121438947	121438947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015276-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1263	208	804	0	ENST00000257555.6:c.1848C>G	p.Ser616Arg	p.S616R	ENST00000257555		616	agC/agG																																																																														
TP53	0	MSKCC	GRCh37	17	7579521	7579522	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0015276-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	245	639	0	ENST00000269305.4:c.165_166del	p.Glu56ArgfsTer6	p.E56Rfs*6	ENST00000269305	NM_001126112.2	55	acTGaa/acaa																																																																														
IRS1	0	MSKCC	GRCh37	2	227660148	227660148	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015276-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			993	144	530	0	ENST00000305123.5:c.3307A>T	p.Thr1103Ser	p.T1103S	ENST00000305123	NM_005544.2	1103	Act/Tct																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521367	8521367	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015276-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			929	69	470	0	ENST00000356435.5:c.871C>A	p.Leu291Met	p.L291M	ENST00000356435		291	Ctg/Atg																																																																														
KLF4	0	MSKCC	GRCh37	9	110248093	110248093	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015276-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			838	81	385	0	ENST00000374672.4:c.1379A>C	p.Lys460Thr	p.K460T	ENST00000374672	NM_004235.4	460	aAa/aCa																																																																														
RB1	0	MSKCC	GRCh37	13	48916798	48916798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	37	399	0	ENST00000267163.4:c.328C>G	p.Leu110Val	p.L110V	ENST00000267163	NM_000321.2	110	Cta/Gta																																																																														
FANCA	0	MSKCC	GRCh37	16	89836626	89836627	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0015277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	72	681	0	ENST00000389301.3:c.2263_2264delinsAC	p.Gly755Thr	p.G755T	ENST00000389301	NM_000135.2	755	GGa/ACa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15950301	15950302	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015277-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	167	620	0	ENST00000268712.3:c.6642dup	p.Lys2215Ter	p.K2215*	ENST00000268712	NM_006311.3	2214	-/T																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	43	228	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	18	604	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593609	55593611	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-	rs121913685		P-0015279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	426	308	0	ENST00000288135.5:c.1679_1681del	p.Val560del	p.V560del	ENST00000288135	NM_000222.2	559	GTT/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	293	423	0				ENST00000310581	NM_198253.2																																																																																
FLCN	0	MSKCC	GRCh37	17	17117084	17117084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	606	453	0	ENST00000285071.4:c.1625C>T	p.Ser542Phe	p.S542F	ENST00000285071	NM_144997.5	542	tCc/tTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980903	40980903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	262	273	0	ENST00000373198.4:c.1583C>T	p.Ser528Leu	p.S528L	ENST00000373198	NM_133170.3	528	tCg/tTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577142	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	534	527	0	ENST00000269305.4:c.796_797delGGinsAA	p.Gly266Lys	p.G266K	ENST00000269305	NM_001126112.2	266	GGa/AAa																																																																														
PPARG	0	MSKCC	GRCh37	3	12434122	12434122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	46	286	1	ENST00000287820.6:c.490C>T	p.Arg164Trp	p.R164W	ENST00000287820	NM_015869.4	164	Cgg/Tgg																																																																														
MTOR	0	MSKCC	GRCh37	1	11187123	11187123	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	249	512	0	ENST00000361445.4:c.6295C>T	p.Gln2099Ter	p.Q2099*	ENST00000361445	NM_004958.3	2099	Caa/Taa																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699417	117699417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	230	503	0	ENST00000369458.3:c.224G>A	p.Gly75Asp	p.G75D	ENST00000369458	NM_024626.3	75	gGt/gAt																																																																														
WT1	0	MSKCC	GRCh37	11	32417954	32417954	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	181	307	0	ENST00000332351.3:c.1099-1G>A		p.X367_splice	ENST00000332351	NM_024426.4	367																																																																															
PGR	0	MSKCC	GRCh37	11	100998826	100998826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	225	610	0	ENST00000325455.5:c.976G>A	p.Asp326Asn	p.D326N	ENST00000325455	NM_001202474.3	326	Gac/Aac																																																																														
LATS2	0	MSKCC	GRCh37	13	21562186	21562186	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1407	518	923	0	ENST00000382592.4:c.1733T>C	p.Val578Ala	p.V578A	ENST00000382592	NM_014572.2	578	gTt/gCt																																																																														
FLT1	0	MSKCC	GRCh37	13	28964014	28964014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	77	255	0	ENST00000282397.4:c.1888G>A	p.Asp630Asn	p.D630N	ENST00000282397	NM_002019.4	630	Gat/Aat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830868	72830868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	181	387	0	ENST00000268489.5:c.5713C>T	p.Pro1905Ser	p.P1905S	ENST00000268489	NM_006885.3	1905	Ccg/Tcg																																																																														
NF1	0	MSKCC	GRCh37	17	29559658	29559837	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTTAGCTTTCTAGTTGATACGGCCTTCACTATGTAAAGGTCAGTCTTTTTATTTCTCAGATACTTCACATTATTTATGAACCTTTTGAATGACTGCAGTGAAGTTGAAGATGAAAGTGCGCAAACAGGTGGCAGGAAACGTGGCATGTCTCGGAGGCTGGCATCACTGAGGCACTGTAC	GGTTAGCTTTCTAGTTGATACGGCCTTCACTATGTAAAGGTCAGTCTTTTTATTTCTCAGATACTTCACATTATTTATGAACCTTTTGAATGACTGCAGTGAAGTTGAAGATGAAAGTGCGCAAACAGGTGGCAGGAAACGTGGCATGTCTCGGAGGCTGGCATCACTGAGGCACTGTAC	-			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	92	34	0	ENST00000358273.4:c.3315-57_3437delTAGCTTTCTAGTTGATACGGCCTTCACTATGTAAAGGTCAGTCTTTTTATTTCTCAGATACTTCACATTATTTATGAACCTTTTGAATGACTGCAGTGAAGTTGAAGATGAAAGTGCGCAAACAGGTGGCAGGAAACGTGGCATGTCTCGGAGGCTGGCATCACTGAGGCACTGTACGGT		p.X1105_splice	ENST00000358273	NM_001042492.2	1105																																																																															
DOT1L	0	MSKCC	GRCh37	19	2217780	2217780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1292	316	600	0	ENST00000398665.3:c.2554G>A	p.Glu852Lys	p.E852K	ENST00000398665	NM_032482.2	852	Gag/Aag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15296382	15296382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	725	717	0	ENST00000263388.2:c.2060C>T	p.Ser687Phe	p.S687F	ENST00000263388	NM_000435.2	687	tCc/tTc																																																																														
MYCN	0	MSKCC	GRCh37	2	16082601	16082601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	85	191	0	ENST00000281043.3:c.415G>A	p.Gly139Arg	p.G139R	ENST00000281043	NM_005378.4	139	Ggg/Agg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470477	25470477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	325	635	0	ENST00000264709.3:c.997G>C	p.Asp333His	p.D333H	ENST00000264709	NM_175629.2	333	Gac/Cac																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024516	31024516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	456	423	0	ENST00000375687.4:c.4001C>T	p.Pro1334Leu	p.P1334L	ENST00000375687	NM_015338.5	1334	cCc/cTc																																																																														
EP300	0	MSKCC	GRCh37	22	41527596	41527596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	490	400	0	ENST00000263253.7:c.1487C>T	p.Pro496Leu	p.P496L	ENST00000263253	NM_001429.3	496	cCt/cTt																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665465	138665465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	247	589	0	ENST00000330315.3:c.100C>T	p.Pro34Ser	p.P34S	ENST00000330315	NM_023067.3	34	Cca/Tca																																																																														
ATR	0	MSKCC	GRCh37	3	142203992	142203992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	125	347	0	ENST00000350721.4:c.6211C>T	p.His2071Tyr	p.H2071Y	ENST00000350721	NM_001184.3	2071	Cat/Tat																																																																														
FAT1	0	MSKCC	GRCh37	4	187557327	187557327	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	172	500	1	ENST00000441802.2:c.4035G>A	p.Trp1345Ter	p.W1345*	ENST00000441802	NM_005245.3	1345	tgG/tgA																																																																														
FAT1	0	MSKCC	GRCh37	4	187557813	187557813	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	153	358	0	ENST00000441802.2:c.3898T>A	p.Phe1300Ile	p.F1300I	ENST00000441802	NM_005245.3	1300	Ttt/Att																																																																														
MDC1	0	MSKCC	GRCh37	6	30670948	30670948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1364	686	519	0	ENST00000376406.3:c.5798G>A	p.Arg1933Gln	p.R1933Q	ENST00000376406	NM_014641.2	1933	cGg/cAg																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138199867	138199867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	363	333	0	ENST00000237289.4:c.1285G>A	p.Gly429Arg	p.G429R	ENST00000237289	NM_001270507.1	429	Ggg/Agg																																																																														
MLL3	0	MSKCC	GRCh37	7	151878409	151878409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	171	492	0	ENST00000262189.6:c.6536A>G	p.Gln2179Arg	p.Q2179R	ENST00000262189	NM_170606.2	2179	cAa/cGa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222439	53222439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	386	376	2	ENST00000375401.3:c.4393C>T	p.Arg1465Trp	p.R1465W	ENST00000375401	NM_004187.3	1465	Cgg/Tgg																																																																														
STAG2	0	MSKCC	GRCh37	X	123197039	123197039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	311	205	0	ENST00000218089.9:c.1805C>T	p.Thr602Ile	p.T602I	ENST00000218089	NM_001042749.1	602	aCt/aTt																																																																														
AKT1	0	MSKCC	GRCh37	14	105239899	105239899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	251	447	1	ENST00000349310.3:c.721C>T	p.Arg241Trp	p.R241W	ENST00000349310	NM_001014432.1	241	Cgg/Tgg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830587	72830589	+	frameshift_variant	Frame_Shift_Ins	INS	TAA	TAA	AAAT			P-0015281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	187	465	0	ENST00000268489.5:c.5992_5994delTTAinsATTT	p.Leu1998IlefsTer2	p.L1998Ifs*2	ENST00000268489	NM_006885.3	1998	TTA/ATTT																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144114	11144114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	186	702	0	ENST00000344626.4:c.3695G>A	p.Gly1232Asp	p.G1232D	ENST00000344626	NM_003072.3	1232	gGc/gAc																																																																														
VHL	0	MSKCC	GRCh37	3	10183755	10183757	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0015282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	112	710	0	ENST00000256474.2:c.227_229delTCT	p.Phe76del	p.F76del	ENST00000256474	NM_000551.3	75	aTCTtc/atc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692960	89692960	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	59	506	0	ENST00000371953.3:c.444del	p.Gln149LysfsTer4	p.Q149Kfs*4	ENST00000371953	NM_000314.4	148	gcA/gc																																																																														
DICER1	0	MSKCC	GRCh37	14	95596401	95596401	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	37	299	0	ENST00000343455.3:c.567del	p.Met190Ter	p.M190*	ENST00000343455	NM_177438.2	189	atT/at																																																																														
MYCN	0	MSKCC	GRCh37	2	16082626	16082626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	32	136	0	ENST00000281043.3:c.440C>G	p.Ala147Gly	p.A147G	ENST00000281043	NM_005378.4	147	gCc/gGc																																																																														
SETD2	0	MSKCC	GRCh37	3	47163376	47163377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	19	312	0	ENST00000409792.3:c.2749dup	p.Ser917LysfsTer18	p.S917Kfs*18	ENST00000409792	NM_014159.6	917	agt/aAgt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099209	157099209	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	110	526	0	ENST00000346085.5:c.146C>G	p.Ser49Cys	p.S49C	ENST00000346085	NM_020732.3	49	tCt/tGt																																																																														
VTCN1	0	MSKCC	GRCh37	1	117695979	117695979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	21	432	0	ENST00000369458.3:c.458C>T	p.Pro153Leu	p.P153L	ENST00000369458	NM_024626.3	153	cCg/cTg																																																																														
PALB2	0	MSKCC	GRCh37	16	23647016	23647016	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	12	580	0	ENST00000261584.4:c.851delC	p.Thr284IlefsTer4	p.T284Ifs*4	ENST00000261584	NM_024675.3	284	aCt/at																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	290	694	0	ENST00000171111.5:c.556G>T	p.Gly186Cys	p.G186C	ENST00000171111	NM_203500.1	186	Ggc/Tgc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868282	37868282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	635	530	0	ENST00000269571.5:c.1003A>T	p.Ser335Cys	p.S335C	ENST00000269571		335	Agc/Tgc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78938087	78938089	+	inframe_deletion	In_Frame_Del	DEL	ACT	ACT	-			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1428	226	682	0	ENST00000306801.3:c.3970_3972del	p.Tyr1324del	p.Y1324del	ENST00000306801	NM_020761.2	1322	gACTac/gac																																																																														
STK11	0	MSKCC	GRCh37	19	1221920	1221948	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACAGGCTCCTCGCCGGCTTCTCCTCAGG	GACAGGCTCCTCGCCGGCTTCTCCTCAGG	-			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	207	592	1	ENST00000326873.7:c.863-26_865del		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																															
DOT1L	0	MSKCC	GRCh37	19	2202713	2202713	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	213	601	0	ENST00000398665.3:c.722A>C	p.Asn241Thr	p.N241T	ENST00000398665	NM_032482.2	241	aAt/aCt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2202720	2202733	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCTTTGGTCCTG	TGCCTTTGGTCCTG	-			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	223	605	0	ENST00000398665.3:c.729_742del	p.Phe243LeufsTer35	p.F243Lfs*35	ENST00000398665	NM_032482.2	243	ttTGCCTTTGGTCCTGag/ttag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11129645	11129645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	282	680	0	ENST00000344626.4:c.2451C>A	p.Asn817Lys	p.N817K	ENST00000344626	NM_003072.3	817	aaC/aaA																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971137	21971137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	104	482	0	ENST00000304494.5:c.221A>G	p.Asp74Gly	p.D74G	ENST00000304494	NM_000077.4	74	gAc/gGc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971137	21971137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	104	482	0	ENST00000304494.5:c.221A>G	p.Asp74Gly	p.D74G	ENST00000304494	NM_000077.4	74	gAc/gGc																																																																														
NTHL1	0	MSKCC	GRCh37	16	2096161	2096161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	49	965	0	ENST00000219066.1:c.346G>A	p.Glu116Lys	p.E116K	ENST00000219066	NM_002528.5	116	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	296	727	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	137	638	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	211	591	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	91	394	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PTEN	0	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	68	518	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-																																																																														
RB1	0	MSKCC	GRCh37	13	49039225	49039225	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	148	726	0	ENST00000267163.4:c.2306delT	p.Leu769CysfsTer41	p.L769Cfs*41	ENST00000267163	NM_000321.2	768	aTt/at																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	235	668	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	70	269	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
MLL2	0	MSKCC	GRCh37	12	49420670	49420670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	72	659	0	ENST00000301067.7:c.15079C>T	p.Arg5027Ter	p.R5027*	ENST00000301067	NM_003482.3	5027	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	153	694	2	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
RB1	0	MSKCC	GRCh37	13	49030478	49030479	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	179	507	1	ENST00000267163.4:c.1959dupA	p.Val654SerfsTer14	p.V654Sfs*14	ENST00000267163	NM_000321.2	651	-/A																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	59	997	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107096	27107096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	162	574	0	ENST00000324856.7:c.6707G>C	p.Arg2236Pro	p.R2236P	ENST00000324856	NM_006015.4	2236	cGc/cCc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	55	613	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
NF1	0	MSKCC	GRCh37	17	29559173	29559173	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	275	572	1	ENST00000358273.4:c.3280G>T	p.Glu1094Ter	p.E1094*	ENST00000358273	NM_001042492.2	1094	Gaa/Taa																																																																														
RHOA	0	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	20	843	0	ENST00000418115.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000418115	NM_001664.2	42	tAt/tGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106803	27106804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	77	804	0	ENST00000324856.7:c.6420dup	p.Phe2141LeufsTer9	p.F2141Lfs*9	ENST00000324856	NM_006015.4	2138	-/C																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508239	106508239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	37	405	0	ENST00000359195.3:c.233C>T	p.Ala78Val	p.A78V	ENST00000359195	NM_002649.2	78	gCg/gTg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	147	542	0	ENST00000435504.4:c.2333dupC	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																														
FLT1	0	MSKCC	GRCh37	13	28908194	28908194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	269	778	1	ENST00000282397.4:c.2561C>T	p.Thr854Met	p.T854M	ENST00000282397	NM_002019.4	854	aCg/aTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	271	838	11	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
DDR2	0	MSKCC	GRCh37	1	162724542	162724542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	66	584	1	ENST00000367921.3:c.314G>A	p.Arg105His	p.R105H	ENST00000367921	NM_006182.2	105	cGc/cAc																																																																														
AKT3	0	MSKCC	GRCh37	1	243736254	243736254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	85	651	1	ENST00000263826.5:c.793G>A	p.Gly265Arg	p.G265R	ENST00000263826	NM_005465.4	265	Gga/Aga																																																																														
PTEN	0	MSKCC	GRCh37	10	89717718	89717719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	93	598	0	ENST00000371953.3:c.750_751dup	p.Gly251ValfsTer6	p.G251Vfs*6	ENST00000371953	NM_000314.4	248	cct/ccTGt																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64129350	64129351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	125	777	0	ENST00000334205.4:c.788dupC	p.Arg264SerfsTer16	p.R264Sfs*16	ENST00000334205	NM_003942.2	261	ttc/ttCc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138112	64138112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	207	727	1	ENST00000334205.4:c.2035G>A	p.Ala679Thr	p.A679T	ENST00000334205	NM_003942.2	679	Gcg/Acg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948433	71948433	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	107	1046	1	ENST00000298229.2:c.3149del	p.Pro1050LeufsTer81	p.P1050Lfs*81	ENST00000298229	NM_001567.3	1049	Ccc/cc																																																																														
ATM	0	MSKCC	GRCh37	11	108163444	108163444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	136	709	0	ENST00000278616.4:c.4535C>T	p.Ala1512Val	p.A1512V	ENST00000278616	NM_000051.3	1512	gCt/gTt																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856283	111856283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	19	76	1	ENST00000341259.2:c.334G>A	p.Ala112Thr	p.A112T	ENST00000341259	NM_005475.2	112	Gcc/Acc																																																																														
RB1	0	MSKCC	GRCh37	13	48941668	48941669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	34	411	0	ENST00000267163.4:c.983dup	p.Asn328LysfsTer2	p.N328Kfs*2	ENST00000267163	NM_000321.2	326	-/A																																																																														
IRS2	0	MSKCC	GRCh37	13	110434972	110434973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	137	988	2	ENST00000375856.3:c.3428dup	p.Arg1144ProfsTer181	p.R1144Pfs*181	ENST00000375856	NM_003749.2	1143	ggc/ggGc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060596	38060596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	403	1075	0	ENST00000250448.2:c.1393T>C	p.Ser465Pro	p.S465P	ENST00000250448	NM_004496.3	465	Tcc/Ccc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061649	38061649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	35	249	0	ENST00000250448.2:c.340G>T	p.Gly114Cys	p.G114C	ENST00000250448	NM_004496.3	114	Ggc/Tgc																																																																														
RAD51B	0	MSKCC	GRCh37	14	68331723	68331723	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	33	212	0	ENST00000487270.1:c.319A>T	p.Thr107Ser	p.T107S	ENST00000487270	NM_133509.3	107	Aca/Tca																																																																														
DICER1	0	MSKCC	GRCh37	14	95566115	95566115	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	105	393	0	ENST00000343455.3:c.4206+2T>C		p.X1402_splice	ENST00000343455	NM_177438.2	1402																																																																															
TSC2	0	MSKCC	GRCh37	16	2107148	2107148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	115	895	0	ENST00000219476.3:c.817A>G	p.Ile273Val	p.I273V	ENST00000219476	NM_000548.3	273	Atc/Gtc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858094	9858094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	95	694	0	ENST00000330684.3:c.3307C>T	p.Arg1103Cys	p.R1103C	ENST00000330684	NM_001134407.1	1103	Cgc/Tgc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821959	72821959	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	55	370	0	ENST00000268489.5:c.10216G>C	p.Gly3406Arg	p.G3406R	ENST00000268489	NM_006885.3	3406	Ggg/Cgg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81960686	81960686	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	97	715	0	ENST00000359376.3:c.2418-1G>A		p.X806_splice	ENST00000359376	NM_002661.3	806																																																																															
RNF43	0	MSKCC	GRCh37	17	56435428	56435428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	40	786	0	ENST00000407977.2:c.1709G>T	p.Gly570Val	p.G570V	ENST00000407977		570	gGc/gTc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45371787	45371787	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	285	726	0	ENST00000262160.6:c.1204T>C	p.Phe402Leu	p.F402L	ENST00000262160	NM_005901.5	402	Ttt/Ctt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575670	48575670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	108	628	0	ENST00000342988.3:c.430T>C	p.Ser144Pro	p.S144P	ENST00000342988	NM_005359.5	144	Tca/Cca																																																																														
PTPRS	0	MSKCC	GRCh37	19	5220018	5220018	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	80	961	0	ENST00000357368.4:c.3697A>G	p.Asn1233Asp	p.N1233D	ENST00000357368	NM_002850.3	1233	Aac/Gac																																																																														
INSR	0	MSKCC	GRCh37	19	7122672	7122672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	71	808	0	ENST00000302850.5:c.3482C>T	p.Ala1161Val	p.A1161V	ENST00000302850	NM_000208.2	1161	gCa/gTa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251596	212251596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	60	546	0	ENST00000342788.4:c.3463C>T	p.Arg1155Ter	p.R1155*	ENST00000342788	NM_005235.2	1155	Cga/Tga																																																																														
ERG	0	MSKCC	GRCh37	21	39755553	39755554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	34	538	2	ENST00000288319.7:c.1211dupC	p.Glu405GlyfsTer61	p.E405Gfs*61	ENST00000288319	NM_182918.3	404	ccg/ccCg																																																																														
EP300	0	MSKCC	GRCh37	22	41554488	41554488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	59	646	0	ENST00000263253.7:c.3574T>C	p.Tyr1192His	p.Y1192H	ENST00000263253	NM_001429.3	1192	Tac/Cac																																																																														
PPARG	5468	MSKCC	GRCh37	3	12434182	12434182	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1187529076		P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	109	697	0	ENST00000287820.6:c.556del	p.Ser186ValfsTer47	p.S186Vfs*47	ENST00000287820	NM_015869.4	184	Aaa/aa																																																																														
GSK3B	0	MSKCC	GRCh37	3	119642308	119642308	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	308	635	0	ENST00000316626.5:c.389T>G	p.Leu130Arg	p.L130R	ENST00000316626		130	cTg/cGg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55146518	55146518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	185	479	0	ENST00000257290.5:c.2192A>G	p.Tyr731Cys	p.Y731C	ENST00000257290	NM_006206.4	731	tAc/tGc																																																																														
KDR	0	MSKCC	GRCh37	4	55981461	55981461	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	75	667	0	ENST00000263923.4:c.476T>C	p.Val159Ala	p.V159A	ENST00000263923	NM_002253.2	159	gTg/gCg																																																																														
IL7R	0	MSKCC	GRCh37	5	35861050	35861050	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	79	561	2	ENST00000303115.3:c.179A>G	p.Glu60Gly	p.E60G	ENST00000303115	NM_002185.3	60	gAg/gGg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950696	38950696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	34	473	0	ENST00000357387.3:c.3254T>C	p.Phe1085Ser	p.F1085S	ENST00000357387	NM_152756.3	1085	tTc/tCc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38952519	38952519	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	162	341	0	ENST00000357387.3:c.2906T>C	p.Val969Ala	p.V969A	ENST00000357387	NM_152756.3	969	gTa/gCa																																																																														
RASA1	0	MSKCC	GRCh37	5	86564809	86564809	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	339	836	0	ENST00000274376.6:c.539+2T>C		p.X180_splice	ENST00000274376	NM_002890.2	180																																																																															
RASA1	0	MSKCC	GRCh37	5	86679557	86679557	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	275	546	0	ENST00000274376.6:c.2718T>G	p.Cys906Trp	p.C906W	ENST00000274376	NM_002890.2	906	tgT/tgG																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205370	38205370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	205	951	0	ENST00000317025.8:c.320G>A	p.Ser107Asn	p.S107N	ENST00000317025	NM_023034.1	107	aGc/aAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76776978	76776978	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	33	579	0	ENST00000373344.5:c.6976-2A>G		p.X2326_splice	ENST00000373344	NM_000489.3	2326																																																																															
STAG2	0	MSKCC	GRCh37	X	123220559	123220560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	83	802	0	ENST00000218089.9:c.3222dup	p.Ser1075IlefsTer12	p.S1075Ifs*12	ENST00000218089	NM_001042749.1	1072	-/A																																																																														
GLI1	0	MSKCC	GRCh37	12	57865224	57865224	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	258	1040	0	ENST00000228682.2:c.2701T>A	p.Tyr901Asn	p.Y901N	ENST00000228682	NM_005269.2	901	Tat/Aat																																																																														
ERBB4	0	MSKCC	GRCh37	2	212286764	212286765	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0015294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	88	762	1	ENST00000342788.4:c.2931_2932delinsTT	p.Met977_Ala978delinsIleSer	p.M977_A978delinsIS	ENST00000342788	NM_005235.2	977	atGGct/atTTct																																																																														
LATS1	0	MSKCC	GRCh37	6	150023161	150023206	+	frameshift_variant	Frame_Shift_Del	DEL	AATTTCTTGTAACATTTGCCGGCTACTGACAGTATAGTTACTGGCA	AATTTCTTGTAACATTTGCCGGCTACTGACAGTATAGTTACTGGCA	-			P-0015294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	255	916	0	ENST00000253339.5:c.57_102del	p.Ala20GlyfsTer20	p.A20Gfs*20	ENST00000253339		19	ccTGCCAGTAACTATACTGTCAGTAGCCGGCAAATGTTACAAGAAATT/cc																																																																														
MLL3	0	MSKCC	GRCh37	7	151960210	151960210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	116	289	0	ENST00000262189.6:c.1190C>T	p.Ser397Leu	p.S397L	ENST00000262189	NM_170606.2	397	tCg/tTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579363	7579363	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TTT			P-0015294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	314	1105	0	ENST00000269305.4:c.324delinsAAA	p.Phe109AsnfsTer15	p.F109Nfs*15	ENST00000269305	NM_001126112.2	108	ggT/ggAAA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	33	845	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	351	867	8	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	175	699	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	58	739	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	56	880	2	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																																																														
CCND2	0	MSKCC	GRCh37	12	4388085	4388085	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	24	437	0	ENST00000261254.3:c.571G>C	p.Asp191His	p.D191H	ENST00000261254	NM_001759.3	191	Gac/Cac																																																																														
POLE	0	MSKCC	GRCh37	12	133250238	133250238	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150032060		P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	310	975	1	ENST00000320574.5:c.1282G>A	p.Ala428Thr	p.A428T	ENST00000320574	NM_006231.2	428	Gcc/Acc																																																																														
LATS2	0	MSKCC	GRCh37	13	21562905	21562906	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TT			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	423	1004	1	ENST00000382592.4:c.1013_1014delinsAA	p.Phe338Ter	p.F338*	ENST00000382592	NM_014572.2	338	tTC/tAA																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24133968	24133968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	258	646	2	ENST00000263121.7:c.119G>A	p.Arg40Gln	p.R40Q	ENST00000263121	NM_003073.3	40	cGa/cAa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245467	153245480	+	frameshift_variant	Frame_Shift_Del	DEL	TGAATGCAATTCCC	TGAATGCAATTCCC	-			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	138	907	0	ENST00000281708.4:c.1711_1724del	p.Gly571HisfsTer29	p.G571Hfs*29	ENST00000281708	NM_033632.3	571	GGGAATTGCATTCAc/c																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965600	93965600	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	38	885	0	ENST00000369303.4:c.2328T>G	p.Asp776Glu	p.D776E	ENST00000369303	NM_004440.3	776	gaT/gaG																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101910062	101910062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	84	417	0	ENST00000374994.4:c.1382G>C	p.Cys461Ser	p.C461S	ENST00000374994	NM_004612.2	461	tGt/tCt																																																																														
MPL	0	MSKCC	GRCh37	1	43812121	43812121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	159	656	1	ENST00000372470.3:c.986C>T	p.Pro329Leu	p.P329L	ENST00000372470	NM_005373.2	329	cCc/cTc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120497663	120497663	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	69	534	0	ENST00000256646.2:c.2219G>C	p.Gly740Ala	p.G740A	ENST00000256646	NM_024408.3	740	gGa/gCa																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843479	156843479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	165	746	0	ENST00000524377.1:c.905C>T	p.Pro302Leu	p.P302L	ENST00000524377	NM_002529.3	302	cCc/cTc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156845960	156845960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	324	1032	0	ENST00000524377.1:c.1590C>A	p.His530Gln	p.H530Q	ENST00000524377	NM_002529.3	530	caC/caA																																																																														
SMYD3	0	MSKCC	GRCh37	1	246518364	246518364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	108	719	0	ENST00000388985.4:c.197G>T	p.Arg66Leu	p.R66L	ENST00000388985		66	cGc/cTc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115837	8115838	+	missense_variant	Missense_Mutation	DNP	GC	GC	TG			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	230	1061	6	ENST00000346208.3:c.1183_1184delinsTG	p.Ala395Cys	p.A395C	ENST00000346208		395	GCc/TGc																																																																														
TET1	0	MSKCC	GRCh37	10	70332684	70332684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	157	947	0	ENST00000373644.4:c.589G>C	p.Glu197Gln	p.E197Q	ENST00000373644	NM_030625.2	197	Gag/Cag																																																																														
TET1	0	MSKCC	GRCh37	10	70441172	70441172	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs140933489		P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	90	766	0	ENST00000373644.4:c.4841A>G	p.Asp1614Gly	p.D1614G	ENST00000373644	NM_030625.2	1614	gAt/gGt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94201004	94201004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	55	685	0	ENST00000323929.3:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000323929	NM_005591.3	358	cCa/cTa																																																																														
GLI1	0	MSKCC	GRCh37	12	57865092	57865093	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	TCT			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	308	1262	0	ENST00000228682.2:c.2569_2570delinsTCT	p.Pro857SerfsTer15	p.P857Sfs*15	ENST00000228682	NM_005269.2	857	CCc/TCTc																																																																														
IRS2	0	MSKCC	GRCh37	13	110438394	110438394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	38	106	0	ENST00000375856.3:c.7A>T	p.Ser3Cys	p.S3C	ENST00000375856	NM_003749.2	3	Agc/Tgc																																																																														
MGA	0	MSKCC	GRCh37	15	41961436	41961438	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TAG	TAG	AA			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	171	651	0	ENST00000219905.7:c.344_346delinsAA	p.Leu115Ter	p.L115*	ENST00000219905	NM_001164273.1	115	tTAGat/tAAat																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	368	627	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
AXIN1	0	MSKCC	GRCh37	16	364667	364667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	214	1004	0	ENST00000262320.3:c.895G>C	p.Glu299Gln	p.E299Q	ENST00000262320	NM_003502.3	299	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	265	987	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29663394	29663394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	136	932	1	ENST00000358273.4:c.6050C>G	p.Thr2017Ser	p.T2017S	ENST00000358273	NM_001042492.2	2017	aCc/aGc																																																																														
NF1	0	MSKCC	GRCh37	17	29701105	29701105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	208	800	4	ENST00000358273.4:c.8452G>A	p.Ala2818Thr	p.A2818T	ENST00000358273	NM_001042492.2	2818	Gca/Aca																																																																														
SOX9	0	MSKCC	GRCh37	17	70118996	70118996	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	258	1013	1	ENST00000245479.2:c.568G>T	p.Glu190Ter	p.E190*	ENST00000245479	NM_000346.3	190	Gag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1207184	1207184	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	429	1168	1	ENST00000326873.7:c.272G>T	p.Gly91Val	p.G91V	ENST00000326873	NM_000455.4	91	gGg/gTg																																																																														
INSR	0	MSKCC	GRCh37	19	7122679	7122679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	137	1079	0	ENST00000302850.5:c.3475G>T	p.Asp1159Tyr	p.D1159Y	ENST00000302850	NM_000208.2	1159	Gac/Tac																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965365	25965365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	249	1024	0	ENST00000435504.4:c.3841G>T	p.Ala1281Ser	p.A1281S	ENST00000435504		1281	Gca/Tca																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794941	242794942	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	108	1134	0	ENST00000334409.5:c.267dup	p.Gly90ArgfsTer16	p.G90Rfs*16	ENST00000334409	NM_005018.2	89	-/C																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944463	40944463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	154	925	0	ENST00000373198.4:c.2039C>A	p.Thr680Lys	p.T680K	ENST00000373198	NM_133170.3	680	aCa/aAa																																																																														
KIT	0	MSKCC	GRCh37	4	55561876	55561876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	169	560	3	ENST00000288135.5:c.266C>T	p.Ala89Val	p.A89V	ENST00000288135	NM_000222.2	89	gCc/gTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187539894	187539894	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	81	671	0	ENST00000441802.2:c.7846G>C	p.Val2616Leu	p.V2616L	ENST00000441802	NM_005245.3	2616	Gtt/Ctt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111758	56111758	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	20	35	0	ENST00000399503.3:c.358G>C	p.Gly120Arg	p.G120R	ENST00000399503	NM_005921.1	120	Ggc/Cgc																																																																														
APC	0	MSKCC	GRCh37	5	112174793	112174793	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	97	558	1	ENST00000257430.4:c.3502G>T	p.Glu1168Ter	p.E1168*	ENST00000257430	NM_000038.5	1168	Gaa/Taa																																																																														
IRF4	0	MSKCC	GRCh37	6	401537	401537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	144	787	1	ENST00000380956.4:c.859C>A	p.Leu287Met	p.L287M	ENST00000380956	NM_001195286.1	287	Ctg/Atg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32184836	32184836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	169	676	2	ENST00000375023.3:c.1747G>T	p.Gly583Trp	p.G583W	ENST00000375023	NM_004557.3	583	Ggg/Tgg																																																																														
PIM1	0	MSKCC	GRCh37	6	37138630	37138630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	318	999	0	ENST00000373509.5:c.164G>T	p.Gly55Val	p.G55V	ENST00000373509	NM_002648.3	55	gGc/gTc																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553213	106553213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	115	831	0	ENST00000369096.4:c.1178C>A	p.Ala393Glu	p.A393E	ENST00000369096	NM_001198.3	393	gCa/gAa																																																																														
BRAF	0	MSKCC	GRCh37	7	140494190	140494190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	302	1190	0	ENST00000288602.6:c.1058A>C	p.His353Pro	p.H353P	ENST00000288602	NM_004333.4	353	cAt/cCt																																																																														
PREX2	0	MSKCC	GRCh37	8	69030882	69030882	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	99	553	0	ENST00000288368.4:c.3421+3G>T		p.X1141_splice	ENST00000288368	NM_024870.2	1141																																																																															
JAK2	0	MSKCC	GRCh37	9	5090454	5090454	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	54	387	1	ENST00000381652.3:c.2770A>T	p.Asn924Tyr	p.N924Y	ENST00000381652	NM_004972.3	924	Aat/Tat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8507338	8507338	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	80	735	0	ENST00000356435.5:c.1640A>G	p.Tyr547Cys	p.Y547C	ENST00000356435		547	tAt/tGt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115838	8115838	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	230	1067	0	ENST00000346208.3:c.1184C>G	p.Ala395Gly	p.A395G	ENST00000346208		395	gCc/gGc																																																																														
NF1	0	MSKCC	GRCh37	17	29579965	29579966	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	T			P-0015300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	70	679	0	ENST00000358273.4:c.4120_4121delinsT	p.His1374SerfsTer4	p.H1374Sfs*4	ENST00000358273	NM_001042492.2	1374	CAc/Tc																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	312	812	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KDM5A	0	MSKCC	GRCh37	12	394684	394684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	123	882	0	ENST00000399788.2:c.5011C>T	p.Pro1671Ser	p.P1671S	ENST00000399788	NM_001042603.1	1671	Cca/Tca																																																																														
NCOR1	0	MSKCC	GRCh37	17	15942749	15942749	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0015302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	45	569	0	ENST00000268712.3:c.6953C>G	p.Ser2318Ter	p.S2318*	ENST00000268712	NM_006311.3	2318	tCa/tGa																																																																														
GATA3	0	MSKCC	GRCh37	10	8106003	8106003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	59	567	1	ENST00000346208.3:c.823C>T	p.Arg275Trp	p.R275W	ENST00000346208		275	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0015302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	309	914	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			283	116	387	0				ENST00000310581	NM_198253.2																																																																																
ANKRD11	0	MSKCC	GRCh37	16	89351208	89351208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	196	441	0	ENST00000301030.4:c.1742C>G	p.Ser581Cys	p.S581C	ENST00000301030	NM_001256183.1	581	tCt/tGt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245515	41245515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	223	753	3	ENST00000357654.3:c.2033C>T	p.Ala678Val	p.A678V	ENST00000357654	NM_007294.3	678	gCc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0015321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	160	559	2	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103527666	103527666	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	44	325	0	ENST00000355739.4:c.2974C>T	p.Arg992Ter	p.R992*	ENST00000355739	NM_000123.3	992	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	363	726	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
CCND1	0	MSKCC	GRCh37	11	69457910	69457910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	440	604	0	ENST00000227507.2:c.310G>T	p.Ala104Ser	p.A104S	ENST00000227507	NM_053056.2	104	Gcc/Tcc																																																																														
PGR	0	MSKCC	GRCh37	11	100962570	100962570	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	269	575	0	ENST00000325455.5:c.1827C>A	p.Cys609Ter	p.C609*	ENST00000325455	NM_001202474.3	609	tgC/tgA																																																																														
PGR	0	MSKCC	GRCh37	11	100998862	100998862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	252	790	0	ENST00000325455.5:c.940G>T	p.Ala314Ser	p.A314S	ENST00000325455	NM_001202474.3	314	Gcc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	242	623	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RB1	0	MSKCC	GRCh37	13	48919283	48919283	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	250	370	0	ENST00000267163.4:c.448A>T	p.Arg150Ter	p.R150*	ENST00000267163	NM_000321.2	150	Aga/Tga																																																																														
TSHR	0	MSKCC	GRCh37	14	81422130	81422130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	365	523	0	ENST00000298171.2:c.106G>A	p.Asp36Asn	p.D36N	ENST00000298171	NM_000369.2	36	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	410	636	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	198	548	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																														
HGF	0	MSKCC	GRCh37	7	81388038	81388038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	194	669	0	ENST00000222390.5:c.337G>T	p.Gly113Cys	p.G113C	ENST00000222390	NM_000601.4	113	Ggc/Tgc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157502190	157502190	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	90	491	1	ENST00000346085.5:c.3223C>T	p.Arg1075Ter	p.R1075*	ENST00000346085	NM_020732.3	1075	Cga/Tga																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0015332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	75	358	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0015332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	145	563	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137797	64137797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	120	802	3	ENST00000334205.4:c.1898T>A	p.Phe633Tyr	p.F633Y	ENST00000334205	NM_003942.2	633	tTc/tAc																																																																														
MGA	0	MSKCC	GRCh37	15	42041022	42041022	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	252	637	1	ENST00000219905.7:c.5400del	p.Leu1800PhefsTer38	p.L1800Ffs*38	ENST00000219905	NM_001164273.1	1800	ttA/tt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351086	89351086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	112	543	0	ENST00000301030.4:c.1864C>A	p.Leu622Met	p.L622M	ENST00000301030	NM_001256183.1	622	Ctg/Atg																																																																														
SETD2	0	MSKCC	GRCh37	3	47155384	47155384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	161	460	0	ENST00000409792.3:c.4697C>A	p.Ala1566Asp	p.A1566D	ENST00000409792	NM_014159.6	1566	gCt/gAt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15989717	15989717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	52	312	0	ENST00000268712.3:c.3056C>T	p.Pro1019Leu	p.P1019L	ENST00000268712	NM_006311.3	1019	cCt/cTt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149460527	149460527	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139635308		P-0015333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	55	633	0	ENST00000286301.3:c.110C>T	p.Thr37Met	p.T37M	ENST00000286301	NM_005211.3	37	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	597	590	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89156955	89156956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	256	603	0	ENST00000336596.2:c.61dup	p.Glu21GlyfsTer9	p.E21Gfs*9	ENST00000336596	NM_005233.5	19	-/G																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916636	178916636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	74	417	0	ENST00000263967.3:c.23G>A	p.Gly8Asp	p.G8D	ENST00000263967	NM_006218.2	8	gGt/gAt																																																																														
RB1	0	MSKCC	GRCh37	13	49030467	49030486	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TCACTGTTTTATAAAAAAGG	TCACTGTTTTATAAAAAAGG	-			P-0015337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	305	512	0	ENST00000267163.4:c.1943_1960+2del		p.X648_splice	ENST00000267163	NM_000321.2	648																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11095012	11095012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	662	996	1	ENST00000344626.4:c.185G>T	p.Gly62Val	p.G62V	ENST00000344626	NM_003072.3	62	gGa/gTa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11095026	11095026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	647	1014	0	ENST00000344626.4:c.199G>A	p.Asp67Asn	p.D67N	ENST00000344626	NM_003072.3	67	Gac/Aac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11106934	11106934	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	677	883	0	ENST00000344626.4:c.1639G>C	p.Asp547His	p.D547H	ENST00000344626	NM_003072.3	547	Gac/Cac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11107189	11107189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	485	624	0	ENST00000344626.4:c.1781G>A	p.Gly594Glu	p.G594E	ENST00000344626	NM_003072.3	594	gGa/gAa																																																																														
ATRX	0	MSKCC	GRCh37	X	76814273	76814278	+	inframe_deletion	In_Frame_Del	DEL	ATTCCT	ATTCCT	-			P-0015337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	392	548	0	ENST00000373344.5:c.6366_6371del	p.Gly2123_Ile2124del	p.G2123_I2124del	ENST00000373344	NM_000489.3	2122	ctAGGAATt/ctt																																																																														
PTEN	0	MSKCC	GRCh37	10	89685300	89685300	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	111	369	0	ENST00000371953.3:c.195C>A	p.Tyr65Ter	p.Y65*	ENST00000371953	NM_000314.4	65	taC/taA																																																																														
MEN1	0	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0015340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	191	678	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																														
DAXX	0	MSKCC	GRCh37	6	33286530	33286530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	216	556	0	ENST00000374542.5:c.2213A>T	p.Asp738Val	p.D738V	ENST00000374542	NM_001141970.1	738	gAc/gTc																																																																														
AXIN1	0	MSKCC	GRCh37	16	364679	364679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	101	698	0	ENST00000262320.3:c.883G>A	p.Gly295Arg	p.G295R	ENST00000262320	NM_003502.3	295	Gga/Aga																																																																														
VHL	0	MSKCC	GRCh37	3	10183762	10183771	+	frameshift_variant	Frame_Shift_Del	DEL	CAATCGCAGT	CAATCGCAGT	-			P-0015342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	182	722	0	ENST00000256474.2:c.232_241del	p.Asn78ArgfsTer78	p.N78Rfs*78	ENST00000256474	NM_000551.3	77	tgCAATCGCAGT/tg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30664735	30664735	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	67	561	1	ENST00000359013.4:c.139T>A	p.Cys47Ser	p.C47S	ENST00000359013	NM_001024847.2	47	Tgt/Agt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52668721	52668721	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	68	630	0	ENST00000394830.3:c.1198del	p.Gln400LysfsTer4	p.Q400Kfs*4	ENST00000394830	NM_018313.4	400	Caa/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	145	840	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	475	364	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	286	280	7	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830064	72830064	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	417	692	0	ENST00000268489.5:c.6517G>T	p.Glu2173Ter	p.E2173*	ENST00000268489	NM_006885.3	2173	Gag/Tag																																																																														
SOX17	0	MSKCC	GRCh37	8	55372161	55372161	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200451706		P-0015345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	156	666	0	ENST00000297316.4:c.851C>T	p.Pro284Leu	p.P284L	ENST00000297316	NM_022454.3	284	cCg/cTg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929273	44929288	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGGGTACTGGAACC	TGTGGGTACTGGAACC	-			P-0015345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	448	444	0	ENST00000377967.4:c.2377_2392del	p.Gly793ThrfsTer69	p.G793Tfs*69	ENST00000377967	NM_021140.2	791	aaTGTGGGTACTGGAACC/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	552	592	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MAX	0	MSKCC	GRCh37	14	65544630	65544630	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	211	471	0	ENST00000358664.4:c.295+1G>T		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																															
DDR2	0	MSKCC	GRCh37	1	162731136	162731136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	230	609	2	ENST00000367921.3:c.991G>T	p.Ala331Ser	p.A331S	ENST00000367921	NM_006182.2	331	Gct/Tct																																																																														
NUF2	0	MSKCC	GRCh37	1	163309268	163309268	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	299	486	1	ENST00000271452.3:c.606+1G>T		p.X202_splice	ENST00000271452	NM_145697.2	202																																																																															
FH	0	MSKCC	GRCh37	1	241675391	241675391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	160	469	1	ENST00000366560.3:c.431G>T	p.Gly144Val	p.G144V	ENST00000366560	NM_000143.3	144	gGa/gTa																																																																														
POLE	0	MSKCC	GRCh37	12	133250217	133250217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	262	588	0	ENST00000320574.5:c.1303G>T	p.Asp435Tyr	p.D435Y	ENST00000320574	NM_006231.2	435	Gat/Tat																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872359	35872359	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	125	567	0	ENST00000216797.5:c.544A>C	p.Asn182His	p.N182H	ENST00000216797	NM_020529.2	182	Aat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	239	526	2	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32166845	32166845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	268	854	0	ENST00000375023.3:c.4393C>A	p.Leu1465Ile	p.L1465I	ENST00000375023	NM_004557.3	1465	Ctt/Att																																																																														
CARD11	0	MSKCC	GRCh37	7	2987294	2987294	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	250	598	0	ENST00000396946.4:c.135C>A	p.Tyr45Ter	p.Y45*	ENST00000396946	NM_032415.4	45	taC/taA																																																																														
JAK2	0	MSKCC	GRCh37	9	5069040	5069040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	66	350	1	ENST00000381652.3:c.1345T>C	p.Tyr449His	p.Y449H	ENST00000381652	NM_004972.3	449	Tat/Cat																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805589	46805589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	247	839	0	ENST00000290295.7:c.367C>G	p.Arg123Gly	p.R123G	ENST00000290295	NM_006361.5	123	Cgc/Ggc																																																																														
MLL3	0	MSKCC	GRCh37	7	151846011	151846011	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183426496		P-0015349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	80	566	0	ENST00000262189.6:c.13001G>A	p.Arg4334Gln	p.R4334Q	ENST00000262189	NM_170606.2	4334	cGg/cAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105824	27105851	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCAGTAAAGATCGTACAGAAGAATGA	TTCCAGTAAAGATCGTACAGAAGAATGA	-			P-0015349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	84	661	0	ENST00000324856.7:c.5436_5463del	p.Pro1813HisfsTer61	p.P1813Hfs*61	ENST00000324856	NM_006015.4	1812	cTTCCAGTAAAGATCGTACAGAAGAATGAt/ct																																																																														
GATA3	0	MSKCC	GRCh37	10	8115862	8115863	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1619	375	728	0	ENST00000346208.3:c.1209dup	p.Ser404GlufsTer103	p.S404Efs*103	ENST00000346208		403	ctg/ctGg																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056224	26056224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	89	478	0	ENST00000343677.2:c.433G>A	p.Ala145Thr	p.A145T	ENST00000343677	NM_005319.3	145	Gca/Aca																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCT			P-0015352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	119	468	0	ENST00000269571.5:c.2314_2325dupTACGTGATGGCT	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCT																																																																														
MLL2	0	MSKCC	GRCh37	12	49424162	49424163	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0015352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	60	410	0	ENST00000301067.7:c.13899_13900delinsTT	p.Val4634Leu	p.V4634L	ENST00000301067	NM_003482.3	4633	tcGGtg/tcTTtg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877422	40877422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	109	422	0	ENST00000373198.4:c.2274G>T	p.Lys758Asn	p.K758N	ENST00000373198	NM_133170.3	758	aaG/aaT																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891299	101891299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	65	569	1	ENST00000374994.4:c.260C>T	p.Ala87Val	p.A87V	ENST00000374994	NM_004612.2	87	gCa/gTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0015355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	44	188	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
PARP1	0	MSKCC	GRCh37	1	226549222	226549222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	29	246	1	ENST00000366794.5:c.2984C>A	p.Ala995Asp	p.A995D	ENST00000366794	NM_001618.3	995	gCt/gAt																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50484165	50484165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	32	289	0	ENST00000394963.4:c.1015T>C	p.Cys339Arg	p.C339R	ENST00000394963	NM_003076.4	339	Tgt/Cgt																																																																														
CDH1	0	MSKCC	GRCh37	16	68847307	68847307	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	82	328	0	ENST00000261769.5:c.1229del	p.Glu410GlyfsTer7	p.E410Gfs*7	ENST00000261769	NM_004360.3	410	gAg/gg																																																																														
TBX3	0	MSKCC	GRCh37	12	115118767	115118768	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	92	341	0	ENST00000257566.3:c.573dup	p.Ala192ArgfsTer35	p.A192Rfs*35	ENST00000257566	NM_016569.3	191	-/C																																																																														
IL10	0	MSKCC	GRCh37	1	206941983	206941983	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	20	179	0	ENST00000423557.1:c.535T>A	p.Ter179ArgextTer8	p.*179Rext*8	ENST00000423557	NM_000572.2	179	Tga/Aga																																																																														
HRAS	0	MSKCC	GRCh37	11	533857	533857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	35	393	0	ENST00000311189.7:c.199A>G	p.Met67Val	p.M67V	ENST00000311189		67	Atg/Gtg																																																																														
PGR	0	MSKCC	GRCh37	11	100999210	100999210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	37	285	0	ENST00000325455.5:c.592C>A	p.Pro198Thr	p.P198T	ENST00000325455	NM_001202474.3	198	Ccg/Acg																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50481183	50481183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	31	295	0	ENST00000394963.4:c.569T>C	p.Phe190Ser	p.F190S	ENST00000394963	NM_003076.4	190	tTc/tCc																																																																														
DICER1	0	MSKCC	GRCh37	14	95570152	95570152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	29	237	1	ENST00000343455.3:c.3581G>T	p.Arg1194Ile	p.R1194I	ENST00000343455	NM_177438.2	1194	aGa/aTa																																																																														
STK11	0	MSKCC	GRCh37	19	1221282	1221282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	35	401	0	ENST00000326873.7:c.805A>T	p.Lys269Ter	p.K269*	ENST00000326873	NM_000455.4	269	Aag/Tag																																																																														
MLL4	0	MSKCC	GRCh37	19	36221496	36221496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	113	413	0	ENST00000222270.7:c.5255G>T	p.Arg1752Leu	p.R1752L	ENST00000222270	NM_014727.1	1752	cGg/cTg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31389227	31389227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	30	281	0	ENST00000328111.2:c.2140C>A	p.Leu714Met	p.L714M	ENST00000328111	NM_006892.3	714	Ctg/Atg																																																																														
INHBA	0	MSKCC	GRCh37	7	41730031	41730031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	36	279	0	ENST00000242208.4:c.498G>T	p.Arg166Ser	p.R166S	ENST00000242208	NM_002192.2	166	agG/agT																																																																														
BRAF	0	MSKCC	GRCh37	7	140454007	140454007	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	24	207	0	ENST00000288602.6:c.1721A>T	p.His574Leu	p.H574L	ENST00000288602	NM_004333.4	574	cAc/cTc																																																																														
PREX2	0	MSKCC	GRCh37	8	69005919	69005919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	68	363	1	ENST00000288368.4:c.2330G>A	p.Gly777Glu	p.G777E	ENST00000288368	NM_024870.2	777	gGa/gAa																																																																														
ABL1	0	MSKCC	GRCh37	9	133760054	133760054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	33	391	0	ENST00000318560.5:c.2377G>T	p.Ala793Ser	p.A793S	ENST00000318560	NM_005157.4	793	Gct/Tct																																																																														
MED12	0	MSKCC	GRCh37	X	70362030	70362030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	42	480	0	ENST00000374080.3:c.6496C>A	p.Gln2166Lys	p.Q2166K	ENST00000374080		2166	Cag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0015359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	191	356	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
ASXL2	0	MSKCC	GRCh37	2	26068378	26068378	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	220	364	1	ENST00000435504.4:c.112A>T	p.Ile38Phe	p.I38F	ENST00000435504		38	Atc/Ttc																																																																														
MED12	0	MSKCC	GRCh37	X	70356262	70356297	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCGGTTGCTGCTCTACCACACACACCTGAG	GCAGCAGCGGTTGCTGCTCTACCACACACACCTGAG	-			P-0015359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	143	318	0	ENST00000374080.3:c.5159_5194del	p.Gln1720_Arg1731del	p.Q1720_R1731del	ENST00000374080		1719	gaGCAGCAGCGGTTGCTGCTCTACCACACACACCTGAGg/gag																																																																														
TP53	0	MSKCC	GRCh37	17	7579697	7579697	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	A			P-0015359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	146	310	0	ENST00000269305.4:c.96+3A>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			990	88	567	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	28	375	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
RNF43	0	MSKCC	GRCh37	17	56436097	56436097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			643	80	372	0	ENST00000407977.2:c.1040G>A	p.Gly347Asp	p.G347D	ENST00000407977		347	gGc/gAc																																																																														
TCF3	0	MSKCC	GRCh37	19	1615692	1615692	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			777	80	502	0	ENST00000344749.5:c.1579delC	p.Arg527GlyfsTer16	p.R527Gfs*16	ENST00000344749	NM_001136139.2	527	Cgg/gg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71936098	71936098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			147	19	111	0	ENST00000298229.2:c.70C>T	p.Arg24Cys	p.R24C	ENST00000298229	NM_001567.3	24	Cgc/Tgc																																																																														
TBX3	0	MSKCC	GRCh37	12	115120872	115120872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	40	295	0	ENST00000257566.3:c.134C>A	p.Thr45Lys	p.T45K	ENST00000257566	NM_016569.3	45	aCg/aAg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610256	10610256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	85	588	0	ENST00000171111.5:c.454G>T	p.Val152Phe	p.V152F	ENST00000171111	NM_203500.1	152	Gtc/Ttc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390216	89390216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	34	291	0	ENST00000336596.2:c.965G>C	p.Cys322Ser	p.C322S	ENST00000336596	NM_005233.5	322	tGt/tCt																																																																														
ESR1	0	MSKCC	GRCh37	6	152129287	152129287	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	37	444	1	ENST00000206249.3:c.240C>A	p.Tyr80Ter	p.Y80*	ENST00000206249	NM_000125.3	80	taC/taA																																																																														
ELF3	0	MSKCC	GRCh37	1	201981088	201981089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	55	371	0	ENST00000359651.3:c.169dup	p.Ala57GlyfsTer35	p.A57Gfs*35	ENST00000359651		56	aag/aaGg																																																																														
PTEN	0	MSKCC	GRCh37	10	89711957	89711957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			741	46	449	0	ENST00000371953.3:c.575C>A	p.Ala192Glu	p.A192E	ENST00000371953	NM_000314.4	192	gCa/gAa																																																																														
MDM2	0	MSKCC	GRCh37	12	69233390	69233390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	40	379	0	ENST00000462284.1:c.1255G>C	p.Glu419Gln	p.E419Q	ENST00000462284	NM_002392.5	419	Gag/Cag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992468	72992468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	99	611	4	ENST00000268489.5:c.1577C>T	p.Ser526Leu	p.S526L	ENST00000268489	NM_006885.3	526	tCa/tTa																																																																														
CUL3	0	MSKCC	GRCh37	2	225346786	225346786	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	41	331	1	ENST00000264414.4:c.1852C>T	p.Gln618Ter	p.Q618*	ENST00000264414	NM_003590.4	618	Caa/Taa																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324665	31324665	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	29	276	0	ENST00000412585.2:c.143C>G	p.Ser48Ter	p.S48*	ENST00000412585	NM_005514.6	48	tCa/tGa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967875	93967875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015360-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	90	616	0	ENST00000369303.4:c.2052C>A	p.Ser684Arg	p.S684R	ENST00000369303	NM_004440.3	684	agC/agA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0015361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	129	396	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	117	513	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	96	425	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	239	554	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	87	456	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ELF3	0	MSKCC	GRCh37	1	201983066	201983066	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	374	585	3	ENST00000359651.3:c.916delC	p.Leu306CysfsTer19	p.L306Cfs*19	ENST00000359651		305	ttC/tt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11118660	11118660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	144	535	1	ENST00000344626.4:c.2084G>A	p.Ser695Asn	p.S695N	ENST00000344626	NM_003072.3	695	aGc/aAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187629075	187629075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	47	462	0	ENST00000441802.2:c.1907C>T	p.Ala636Val	p.A636V	ENST00000441802	NM_005245.3	636	gCa/gTa																																																																														
MLL3	0	MSKCC	GRCh37	7	151878620	151878620	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	37	427	0	ENST00000262189.6:c.6325T>G	p.Phe2109Val	p.F2109V	ENST00000262189	NM_170606.2	2109	Ttt/Gtt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	135	556	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	121	585	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7577069	7577069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55819519		P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	62	581	2	ENST00000269305.4:c.869G>A	p.Arg290His	p.R290H	ENST00000269305	NM_001126112.2	290	cGc/cAc																																																																														
STK11	0	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	188	417	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																														
SPOP	0	MSKCC	GRCh37	17	47677792	47677792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	138	517	1	ENST00000347630.2:c.1073C>T	p.Ser358Leu	p.S358L	ENST00000347630	NM_001007230.1	358	tCa/tTa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	173	346	0	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																														
MCL1	0	MSKCC	GRCh37	1	150550782	150550782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	93	406	0	ENST00000369026.2:c.874G>A	p.Glu292Lys	p.E292K	ENST00000369026	NM_021960.4	292	Gaa/Aaa																																																																														
ALK	0	MSKCC	GRCh37	2	30143171	30143171	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	99	343	0	ENST00000389048.3:c.355G>T	p.Glu119Ter	p.E119*	ENST00000389048	NM_004304.4	119	Gag/Tag																																																																														
GATA3	0	MSKCC	GRCh37	10	8115729	8115729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	203	453	0	ENST00000346208.3:c.1075G>T	p.Glu359Ter	p.E359*	ENST00000346208		359	Gaa/Taa																																																																														
NEGR1	0	MSKCC	GRCh37	1	72748020	72748020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	141	581	1	ENST00000357731.5:c.158G>A	p.Gly53Glu	p.G53E	ENST00000357731	NM_173808.2	53	gGg/gAg																																																																														
ATM	0	MSKCC	GRCh37	11	108196791	108196791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	101	260	0	ENST00000278616.4:c.6814G>A	p.Glu2272Lys	p.E2272K	ENST00000278616	NM_000051.3	2272	Gaa/Aaa																																																																														
MLL2	0	MSKCC	GRCh37	12	49431596	49431596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	126	487	0	ENST00000301067.7:c.9543G>C	p.Glu3181Asp	p.E3181D	ENST00000301067	NM_003482.3	3181	gaG/gaC																																																																														
DICER1	0	MSKCC	GRCh37	14	95557669	95557669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	81	647	0	ENST00000343455.3:c.5398G>C	p.Glu1800Gln	p.E1800Q	ENST00000343455	NM_177438.2	1800	Gag/Cag																																																																														
BLM	0	MSKCC	GRCh37	15	91310153	91310153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	167	344	0	ENST00000355112.3:c.2207A>G	p.Tyr736Cys	p.Y736C	ENST00000355112	NM_000057.2	736	tAt/tGt																																																																														
TCF3	0	MSKCC	GRCh37	19	1632389	1632389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	159	634	0	ENST00000344749.5:c.161C>T	p.Pro54Leu	p.P54L	ENST00000344749	NM_001136139.2	54	cCc/cTc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2193688	2193688	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	211	537	0	ENST00000398665.3:c.494G>A	p.Gly165Asp	p.G165D	ENST00000398665	NM_032482.2	165	gGt/gAt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602832	10602832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	253	747	0	ENST00000171111.5:c.746G>T	p.Cys249Phe	p.C249F	ENST00000171111	NM_203500.1	249	tGc/tTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123739	11123739	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	207	553	1	ENST00000344626.4:c.2389A>T	p.Met797Leu	p.M797L	ENST00000344626	NM_003072.3	797	Atg/Ttg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52613161	52613161	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	59	577	0	ENST00000394830.3:c.3367T>G	p.Phe1123Val	p.F1123V	ENST00000394830	NM_018313.4	1123	Ttt/Gtt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52620498	52620498	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	184	500	0	ENST00000394830.3:c.3255G>C	p.Glu1085Asp	p.E1085D	ENST00000394830	NM_018313.4	1085	gaG/gaC																																																																														
RASA1	0	MSKCC	GRCh37	5	86658365	86658365	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	63	189	0	ENST00000274376.6:c.1333-3C>T		p.X445_splice	ENST00000274376	NM_002890.2	445																																																																															
EZH2	0	MSKCC	GRCh37	7	148514997	148514997	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	148	436	0	ENST00000320356.2:c.1212G>C	p.Glu404Asp	p.E404D	ENST00000320356	NM_004456.4	404	gaG/gaC																																																																														
EZH2	0	MSKCC	GRCh37	7	148515130	148515130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	106	378	0	ENST00000320356.2:c.1079G>C	p.Arg360Thr	p.R360T	ENST00000320356	NM_004456.4	360	aGa/aCa																																																																														
JAK2	0	MSKCC	GRCh37	9	5069054	5069054	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	105	301	0	ENST00000381652.3:c.1359G>C	p.Leu453Phe	p.L453F	ENST00000381652	NM_004972.3	453	ttG/ttC																																																																														
NF2	0	MSKCC	GRCh37	22	30032794	30032794	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	111	280	0	ENST00000338641.4:c.169C>T	p.Arg57Ter	p.R57*	ENST00000338641	NM_000268.3	57	Cga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	49030478	49030478	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0015372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	177	259	0	ENST00000267163.4:c.1953T>G	p.Tyr651Ter	p.Y651*	ENST00000267163	NM_000321.2	651	taT/taG																																																																														
TP53	0	MSKCC	GRCh37	17	7577088	7577088	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	339	457	0	ENST00000269305.4:c.850A>T	p.Thr284Ser	p.T284S	ENST00000269305	NM_001126112.2	284	Aca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7577091	7577092	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	341	463	0	ENST00000269305.4:c.846_847insA	p.Arg283ThrfsTer23	p.R283Tfs*23	ENST00000269305	NM_001126112.2	282	-/A																																																																														
ATRX	0	MSKCC	GRCh37	X	76874290	76874309	+	frameshift_variant	Frame_Shift_Del	DEL	AACATCTCATAGAGAATGTG	AACATCTCATAGAGAATGTG	-			P-0015372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	129	411	0	ENST00000373344.5:c.5413_5432del	p.His1805SerfsTer49	p.H1805Sfs*49	ENST00000373344	NM_000489.3	1805	CACATTCTCTATGAGATGTTa/a																																																																														
RBM10	0	MSKCC	GRCh37	X	47038879	47038879	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	27	479	0	ENST00000329236.7:c.655G>T	p.Glu219Ter	p.E219*	ENST00000329236	NM_001204466.1	219	Gag/Tag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	54	333	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																														
FYN	0	MSKCC	GRCh37	6	112041026	112041026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	112	376	0	ENST00000368678.4:c.229C>T	p.Arg77Cys	p.R77C	ENST00000368678		77	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	55	380	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68849637	68849637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	69	602	1	ENST00000261769.5:c.1540G>T	p.Asp514Tyr	p.D514Y	ENST00000261769	NM_004360.3	514	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	71	628	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	21	365	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0015384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	109	468	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
BRIP1	0	MSKCC	GRCh37	17	59760696	59760706	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGGTTTAA	AGATGGTTTAA	-			P-0015384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	51	456	0	ENST00000259008.2:c.3701_3711del	p.Phe1234SerfsTer5	p.F1234Sfs*5	ENST00000259008	NM_032043.2	1234	tTTAAACCATCT/t																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575168	48575168	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0015384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	293	0	ENST00000342988.3:c.362T>G	p.Leu121Ter	p.L121*	ENST00000342988	NM_005359.5	121	tTa/tGa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0015388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	192	635	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	174	630	1	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138623	11138623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	131	466	0	ENST00000344626.4:c.3379G>C	p.Asp1127His	p.D1127H	ENST00000344626	NM_003072.3	1127	Gat/Cat																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873834	35873834	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	80	254	0	ENST00000216797.5:c.17A>T	p.Glu6Val	p.E6V	ENST00000216797	NM_020529.2	6	gAg/gTg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25982469	25982469	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	135	320	0	ENST00000435504.4:c.821del	p.Pro274ArgfsTer13	p.P274Rfs*13	ENST00000435504		274	cCg/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	31	474	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	48	601	0	ENST00000269305.4:c.581T>A	p.Leu194His	p.L194H	ENST00000269305	NM_001126112.2	194	cTt/cAt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858336	9858336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	29	259	0	ENST00000330684.3:c.3065G>A	p.Arg1022His	p.R1022H	ENST00000330684	NM_001134407.1	1022	cGc/cAc																																																																														
PREX2	0	MSKCC	GRCh37	8	68965332	68965332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0015389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	28	443	0	ENST00000288368.4:c.944C>G	p.Ala315Gly	p.A315G	ENST00000288368	NM_024870.2	315	gCt/gGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	255	577	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MYC	0	MSKCC	GRCh37	8	128750684	128750684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	209	415	2	ENST00000377970.2:c.221C>T	p.Pro74Leu	p.P74L	ENST00000377970	NM_002467.4	74	cCg/cTg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120483345	120483345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	212	442	2	ENST00000256646.2:c.3016A>G	p.Ile1006Val	p.I1006V	ENST00000256646	NM_024408.3	1006	Att/Gtt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32190320	32190320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	185	409	0	ENST00000375023.3:c.419G>A	p.Arg140His	p.R140H	ENST00000375023	NM_004557.3	140	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	110	330	0				ENST00000310581	NM_198253.2																																																																																
BCOR	0	MSKCC	GRCh37	X	39933762	39933763	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0015401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	219	464	0	ENST00000378444.4:c.836_837del	p.Leu279ArgfsTer21	p.L279Rfs*21	ENST00000378444	NM_001123385.1	279	cTC/c																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0015403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	27	400	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991961	72991961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	23	488	1	ENST00000268489.5:c.2084C>T	p.Pro695Leu	p.P695L	ENST00000268489	NM_006885.3	695	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0015403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	18	508	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
SETD2	0	MSKCC	GRCh37	3	47129710	47129710	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	20	485	0	ENST00000409792.3:c.5170G>T	p.Glu1724Ter	p.E1724*	ENST00000409792	NM_014159.6	1724	Gaa/Taa																																																																														
SETD2	0	MSKCC	GRCh37	3	47139465	47139465	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	29	577	0	ENST00000409792.3:c.5122C>T	p.Arg1708Ter	p.R1708*	ENST00000409792	NM_014159.6	1708	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	179	493	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SETD2	0	MSKCC	GRCh37	3	47164505	47164505	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	150	292	0	ENST00000409792.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000409792	NM_014159.6	541	Cga/Tga																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741413	145741413	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144637135		P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	153	674	0	ENST00000428558.2:c.1090G>A	p.Val364Met	p.V364M	ENST00000428558	NM_004260.3	364	Gtg/Atg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53245051	53245051	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	335	261	0	ENST00000375401.3:c.889G>T	p.Glu297Ter	p.E297*	ENST00000375401	NM_004187.3	297	Gag/Tag																																																																														
MTOR	0	MSKCC	GRCh37	1	11174901	11174901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	127	608	1	ENST00000361445.4:c.7133G>T	p.Arg2378Ile	p.R2378I	ENST00000361445	NM_004958.3	2378	aGa/aTa																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741639	17741639	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	94	307	0	ENST00000250003.3:c.310A>C	p.Lys104Gln	p.K104Q	ENST00000250003	NM_002478.4	104	Aag/Cag																																																																														
WT1	0	MSKCC	GRCh37	11	32456265	32456265	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	321	661	1	ENST00000332351.3:c.627G>T	p.Gln209His	p.Q209H	ENST00000332351	NM_024426.4	209	caG/caT																																																																														
WT1	0	MSKCC	GRCh37	11	32456585	32456585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	45	78	0	ENST00000332351.3:c.307G>T	p.Ala103Ser	p.A103S	ENST00000332351	NM_024426.4	103	Gcg/Tcg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948545	71948545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	295	633	0	ENST00000298229.2:c.3257G>T	p.Arg1086Leu	p.R1086L	ENST00000298229	NM_001567.3	1086	cGt/cTt																																																																														
RECQL	0	MSKCC	GRCh37	12	21629887	21629887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	181	598	0	ENST00000421138.2:c.907G>T	p.Asp303Tyr	p.D303Y	ENST00000421138		303	Gat/Tat																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781326	3781326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	143	654	1	ENST00000262367.5:c.5039C>G	p.Ser1680Cys	p.S1680C	ENST00000262367	NM_004380.2	1680	tCc/tGc																																																																														
MAPK3	0	MSKCC	GRCh37	16	30128072	30128072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1309	159	652	0	ENST00000263025.4:c.1057G>C	p.Asp353His	p.D353H	ENST00000263025	NM_002746.2	353	Gat/Cat																																																																														
CIC	0	MSKCC	GRCh37	19	42791575	42791575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	134	486	0	ENST00000575354.2:c.556G>A	p.Glu186Lys	p.E186K	ENST00000575354	NM_015125.3	186	Gag/Aag																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111881462	111881462	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs199602272		P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	98	418	0	ENST00000393256.3:c.140A>G	p.Asn47Ser	p.N47S	ENST00000393256	NM_006538.4	47	aAt/aGt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098852	178098852	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	108	562	0	ENST00000397062.3:c.193G>T	p.Glu65Ter	p.E65*	ENST00000397062	NM_006164.4	65	Gag/Tag																																																																														
PAK7	0	MSKCC	GRCh37	20	9561118	9561118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	132	306	0	ENST00000353224.5:c.664G>T	p.Ala222Ser	p.A222S	ENST00000353224	NM_177990.2	222	Gcc/Tcc																																																																														
FYN	0	MSKCC	GRCh37	6	112029188	112029188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	214	549	0	ENST00000368678.4:c.380C>A	p.Thr127Asn	p.T127N	ENST00000368678		127	aCt/aAt																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137527402	137527402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	63	366	1	ENST00000367739.4:c.244C>T	p.His82Tyr	p.H82Y	ENST00000367739	NM_000416.2	82	Cat/Tat																																																																														
ARID1B	0	MSKCC	GRCh37	6	157150478	157150478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	197	388	0	ENST00000346085.5:c.1660G>T	p.Gly554Cys	p.G554C	ENST00000346085	NM_020732.3	554	Ggc/Tgc																																																																														
CARD11	0	MSKCC	GRCh37	7	2979445	2979445	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	104	610	0	ENST00000396946.4:c.802G>C	p.Glu268Gln	p.E268Q	ENST00000396946	NM_032415.4	268	Gaa/Caa																																																																														
HGF	0	MSKCC	GRCh37	7	81336664	81336665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	53	341	0	ENST00000222390.5:c.1557_1558insA	p.Gly520ArgfsTer26	p.G520Rfs*26	ENST00000222390	NM_000601.4	519	-/A																																																																														
MLL3	0	MSKCC	GRCh37	7	151932963	151932963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2	24	7	0	ENST00000262189.6:c.2708G>T	p.Gly903Val	p.G903V	ENST00000262189	NM_170606.2	903	gGg/gTg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981722	70981722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	303	750	1	ENST00000276594.2:c.374G>A	p.Ser125Asn	p.S125N	ENST00000276594	NM_024504.3	125	aGc/aAc																																																																														
JAK2	0	MSKCC	GRCh37	9	5073697	5073697	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	159	232	1	ENST00000381652.3:c.1777-1G>T		p.X593_splice	ENST00000381652	NM_004972.3	593																																																																															
PTPRD	0	MSKCC	GRCh37	9	8376714	8376714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	141	463	1	ENST00000356435.5:c.4399C>A	p.Gln1467Lys	p.Q1467K	ENST00000356435		1467	Cag/Aag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399926	139399927	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	310	767	2	ENST00000277541.6:c.4421_4422delinsCT	p.Trp1474Ser	p.W1474S	ENST00000277541	NM_017617.3	1474	tGG/tCT																																																																														
TRAF2	0	MSKCC	GRCh37	9	139802670	139802670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	161	370	0	ENST00000247668.2:c.515G>A	p.Gly172Glu	p.G172E	ENST00000247668	NM_021138.3	172	gGa/gAa																																																																														
CRLF2	0	MSKCC	GRCh37	X	1317466	1317466	+	downstream_gene_variant	3'Flank	SNP	G	G	T			P-0015404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	374	675	0				ENST00000381566																																																																																	
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	44	465	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577561	7577561	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	79	488	0	ENST00000269305.4:c.720T>G	p.Ser240Arg	p.S240R	ENST00000269305	NM_001126112.2	240	agT/agG																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	77	646	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																														
NF1	0	MSKCC	GRCh37	17	29559208	29559208	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	24	355	0	ENST00000358273.4:c.3314+1G>A		p.X1105_splice	ENST00000358273	NM_001042492.2	1105																																																																															
NF1	0	MSKCC	GRCh37	17	29667586	29667598	+	frameshift_variant	Frame_Shift_Del	DEL	AACTTGTATTCAG	AACTTGTATTCAG	-			P-0015406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	74	664	0	ENST00000358273.4:c.6985_6997del	p.Asn2329GlnfsTer13	p.N2329Qfs*13	ENST00000358273	NM_001042492.2	2329	AACTTGTATTCAGca/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	59	462	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56490980	56490980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	95	549	0	ENST00000267101.3:c.2426A>G	p.Gln809Arg	p.Q809R	ENST00000267101	NM_001982.3	809	cAg/cGg																																																																														
FLCN	0	MSKCC	GRCh37	17	17131205	17131205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	50	651	0	ENST00000285071.4:c.247G>A	p.Glu83Lys	p.E83K	ENST00000285071	NM_144997.5	83	Gag/Aag																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	44	581	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
TSC1	0	MSKCC	GRCh37	9	135779129	135779129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	23	373	0	ENST00000298552.3:c.2117G>A	p.Arg706His	p.R706H	ENST00000298552	NM_001162426.1	706	cGt/cAt																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	33	430	2	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																														
IRS2	0	MSKCC	GRCh37	13	110435136	110435136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	47	644	0	ENST00000375856.3:c.3265G>C	p.Ala1089Pro	p.A1089P	ENST00000375856	NM_003749.2	1089	Gcc/Ccc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088659	27088659	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	74	706	0	ENST00000324856.7:c.2272delC	p.Gln758ArgfsTer75	p.Q758Rfs*75	ENST00000324856	NM_006015.4	756	aaC/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27107136	27107137	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	47	415	0	ENST00000324856.7:c.6749_6750del	p.Glu2250ValfsTer27	p.E2250Vfs*27	ENST00000324856	NM_006015.4	2249	tcAGag/tcag																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856592	111856592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	12	121	2	ENST00000341259.2:c.643G>A	p.Ala215Thr	p.A215T	ENST00000341259	NM_005475.2	215	Gca/Aca																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871044	12871044	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	55	261	0	ENST00000228872.4:c.275delC	p.Pro92ArgfsTer27	p.P92Rfs*27	ENST00000228872	NM_004064.3	91	Ccc/cc																																																																														
TAP2	0	MSKCC	GRCh37	6	32803483	32803483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	67	694	1	ENST00000374899.4:c.676C>T	p.Arg226Trp	p.R226W	ENST00000374899	NM_018833.2	226	Cgg/Tgg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	47	775	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
BCL10	0	MSKCC	GRCh37	1	85733375	85733377	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	59	501	0	ENST00000370580.1:c.635_637del	p.Glu212del	p.E212del	ENST00000370580	NM_003921.4	212	gAAGga/gga																																																																														
ELF3	0	MSKCC	GRCh37	1	201981111	201981111	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	156	582	0	ENST00000359651.3:c.193del	p.Gln65SerfsTer90	p.Q65Sfs*90	ENST00000359651		64	Ccc/cc																																																																														
ELF3	0	MSKCC	GRCh37	1	201982387	201982387	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	252	741	1	ENST00000359651.3:c.766G>T	p.Glu256Ter	p.E256*	ENST00000359651		256	Gag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108201089	108201089	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	37	321	0	ENST00000278616.4:c.7456C>T	p.Arg2486Ter	p.R2486*	ENST00000278616	NM_000051.3	2486	Cga/Tga																																																																														
MLL	0	MSKCC	GRCh37	11	118342685	118342685	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	28	265	0	ENST00000534358.1:c.811A>T	p.Lys271Ter	p.K271*	ENST00000534358	NM_005933.3	271	Aaa/Taa																																																																														
MLL	0	MSKCC	GRCh37	11	118377230	118377230	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	52	399	0	ENST00000534358.1:c.10627del	p.Thr3543ProfsTer8	p.T3543Pfs*8	ENST00000534358	NM_005933.3	3541	ccA/cc																																																																														
ETV6	0	MSKCC	GRCh37	12	12006467	12006467	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	38	640	1	ENST00000396373.4:c.435G>T	p.Glu145Asp	p.E145D	ENST00000396373	NM_001987.4	145	gaG/gaT																																																																														
GLI1	0	MSKCC	GRCh37	12	57859457	57859457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	31	507	1	ENST00000228682.2:c.602G>A	p.Ser201Asn	p.S201N	ENST00000228682	NM_005269.2	201	aGc/aAc																																																																														
FLT1	0	MSKCC	GRCh37	13	28908249	28908249	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	38	483	1	ENST00000282397.4:c.2506G>T	p.Gly836Trp	p.G836W	ENST00000282397	NM_002019.4	836	Ggg/Tgg																																																																														
DIS3	0	MSKCC	GRCh37	13	73337636	73337636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	34	213	0	ENST00000377767.4:c.2080C>A	p.Pro694Thr	p.P694T	ENST00000377767	NM_014953.3	694	Cca/Aca																																																																														
IRS2	0	MSKCC	GRCh37	13	110435724	110435724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	27	353	0	ENST00000375856.3:c.2677C>A	p.Leu893Met	p.L893M	ENST00000375856	NM_003749.2	893	Ctg/Atg																																																																														
TSC2	0	MSKCC	GRCh37	16	2122925	2122925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150672640		P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	51	697	2	ENST00000219476.3:c.2296G>A	p.Val766Met	p.V766M	ENST00000219476	NM_000548.3	766	Gtg/Atg																																																																														
PALB2	0	MSKCC	GRCh37	16	23637631	23637631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	27	656	1	ENST00000261584.4:c.2674G>A	p.Glu892Lys	p.E892K	ENST00000261584	NM_024675.3	892	Gaa/Aaa																																																																														
POLD1	0	MSKCC	GRCh37	19	50902172	50902172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	23	559	0	ENST00000440232.2:c.64C>A	p.Leu22Ile	p.L22I	ENST00000440232	NM_002691.3	22	Ctc/Atc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52725368	52725368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	20	399	0	ENST00000322088.6:c.1535G>A	p.Cys512Tyr	p.C512Y	ENST00000322088	NM_014225.5	512	tGt/tAt																																																																														
ASXL2	0	MSKCC	GRCh37	2	25994394	25994394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	43	316	0	ENST00000435504.4:c.419C>A	p.Pro140Gln	p.P140Q	ENST00000435504		140	cCg/cAg																																																																														
MSH2	0	MSKCC	GRCh37	2	47656936	47656936	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	92	319	0	ENST00000233146.2:c.1132G>T	p.Glu378Ter	p.E378*	ENST00000233146	NM_000251.2	378	Gaa/Taa																																																																														
INHA	0	MSKCC	GRCh37	2	220439698	220439698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	42	618	0	ENST00000243786.2:c.551C>G	p.Ser184Cys	p.S184C	ENST00000243786	NM_002191.3	184	tCt/tGt																																																																														
CUL3	0	MSKCC	GRCh37	2	225346615	225346615	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	62	311	0	ENST00000264414.4:c.2023C>G	p.Gln675Glu	p.Q675E	ENST00000264414	NM_003590.4	675	Caa/Gaa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264823	46264823	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	36	464	0	ENST00000371998.3:c.1693C>G	p.Gln565Glu	p.Q565E	ENST00000371998		565	Cag/Gag																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41747856	41747856	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	21	520	0	ENST00000226382.2:c.913A>G	p.Lys305Glu	p.K305E	ENST00000226382	NM_003924.3	305	Aaa/Gaa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217136	66217136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	74	462	0	ENST00000273854.3:c.2479G>A	p.Asp827Asn	p.D827N	ENST00000273854	NM_004439.5	827	Gat/Aat																																																																														
FAT1	0	MSKCC	GRCh37	4	187539148	187539148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	37	373	0	ENST00000441802.2:c.8592G>A	p.Met2864Ile	p.M2864I	ENST00000441802	NM_005245.3	2864	atG/atA																																																																														
FAT1	0	MSKCC	GRCh37	4	187540958	187540958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189912205		P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	30	247	1	ENST00000441802.2:c.6782C>T	p.Thr2261Met	p.T2261M	ENST00000441802	NM_005245.3	2261	aCg/aTg																																																																														
TAP2	0	MSKCC	GRCh37	6	32803536	32803536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	52	560	0	ENST00000374899.4:c.623G>A	p.Gly208Asp	p.G208D	ENST00000374899	NM_018833.2	208	gGc/gAc																																																																														
SESN1	0	MSKCC	GRCh37	6	109315704	109315704	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	103	580	0	ENST00000436639.2:c.1081G>T	p.Glu361Ter	p.E361*	ENST00000436639	NM_014454.2	361	Gaa/Taa																																																																														
DUSP4	0	MSKCC	GRCh37	8	29207450	29207450	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	43	302	1	ENST00000240100.2:c.346G>T	p.Glu116Ter	p.E116*	ENST00000240100	NM_001394.6	116	Gag/Tag																																																																														
JAK2	0	MSKCC	GRCh37	9	5078341	5078342	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	34	340	0	ENST00000381652.3:c.2033dup	p.Asn678LysfsTer21	p.N678Kfs*21	ENST00000381652	NM_004972.3	676	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	74	437	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	54	393	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	56	363	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967270	134967270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	71	490	0	ENST00000398015.3:c.2609G>A	p.Arg870Gln	p.R870Q	ENST00000398015	NM_004441.4	870	cGg/cAg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944259	81944259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	133	480	0	ENST00000359376.3:c.1868G>A	p.Arg623His	p.R623H	ENST00000359376	NM_002661.3	623	cGc/cAc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508260	106508260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	56	233	0	ENST00000359195.3:c.254C>T	p.Ala85Val	p.A85V	ENST00000359195	NM_002649.2	85	gCg/gTg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71247496	71247496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	92	420	1	ENST00000318789.4:c.37G>A	p.Gly13Ser	p.G13S	ENST00000318789	NM_032682.5	13	Ggt/Agt																																																																														
ARID5B	0	MSKCC	GRCh37	10	63816897	63816897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	39	215	0	ENST00000279873.7:c.868G>T	p.Ala290Ser	p.A290S	ENST00000279873	NM_032199.2	290	Gcc/Tcc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346979	89346979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	58	262	0	ENST00000301030.4:c.5971C>T	p.Pro1991Ser	p.P1991S	ENST00000301030	NM_001256183.1	1991	Cca/Tca																																																																														
APC	0	MSKCC	GRCh37	5	112175458	112175464	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCAGT	TGTCAGT	-			P-0015411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	96	275	0	ENST00000257430.4:c.4168_4174del	p.Val1390HisfsTer23	p.V1390Hfs*23	ENST00000257430	NM_000038.5	1389	tcTGTCAGT/tc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0015413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	751	650	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	265	641	3	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
MDC1	0	MSKCC	GRCh37	6	30680482	30680482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	464	500	0	ENST00000376406.3:c.1237G>A	p.Ala413Thr	p.A413T	ENST00000376406	NM_014641.2	413	Gcg/Acg																																																																														
TP53	0	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	348	832	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																														
MLL2	0	MSKCC	GRCh37	12	49426366	49426366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1414	439	935	0	ENST00000301067.7:c.12122C>T	p.Pro4041Leu	p.P4041L	ENST00000301067	NM_003482.3	4041	cCc/cTc																																																																														
MLL2	0	MSKCC	GRCh37	12	49443502	49443502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	195	423	0	ENST00000301067.7:c.3869G>A	p.Arg1290Gln	p.R1290Q	ENST00000301067	NM_003482.3	1290	cGg/cAg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482366	56482366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	191	627	0	ENST00000267101.3:c.914G>C	p.Cys305Ser	p.C305S	ENST00000267101	NM_001982.3	305	tGt/tCt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678499	88678499	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	212	507	1	ENST00000360948.2:c.1037A>T	p.Lys346Met	p.K346M	ENST00000360948	NM_001012338.2	346	aAg/aTg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	90	455	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518111	8518111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	325	420	2	ENST00000356435.5:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000356435		427	cGa/cAa																																																																														
APC	0	MSKCC	GRCh37	5	112173949	112173949	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	86	429	0	ENST00000257430.4:c.2658G>C	p.Gln886His	p.Q886H	ENST00000257430	NM_000038.5	886	caG/caC																																																																														
SESN1	0	MSKCC	GRCh37	6	109315704	109315704	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	132	675	1	ENST00000436639.2:c.1081G>T	p.Glu361Ter	p.E361*	ENST00000436639	NM_014454.2	361	Gaa/Taa																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46531788	46531788	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	87	477	0	ENST00000262741.5:c.559C>T	p.Gln187Ter	p.Q187*	ENST00000262741	NM_003629.3	187	Cag/Tag																																																																														
FUBP1	0	MSKCC	GRCh37	1	78444604	78444604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	322	453	0	ENST00000370768.2:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000370768	NM_003902.3	29	Gac/Tac																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458600	120458600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	139	574	0	ENST00000256646.2:c.6745G>T	p.Val2249Phe	p.V2249F	ENST00000256646	NM_024408.3	2249	Gtc/Ttc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120469223	120469223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	145	528	0	ENST00000256646.2:c.3904G>A	p.Glu1302Lys	p.E1302K	ENST00000256646	NM_024408.3	1302	Gaa/Aaa																																																																														
TET1	0	MSKCC	GRCh37	10	70451167	70451167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	405	590	0	ENST00000373644.4:c.6007G>A	p.Asp2003Asn	p.D2003N	ENST00000373644	NM_030625.2	2003	Gat/Aat																																																																														
LMO1	0	MSKCC	GRCh37	11	8248579	8248579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	174	697	1	ENST00000335790.3:c.308G>T	p.Arg103Leu	p.R103L	ENST00000335790	NM_002315.2	103	cGg/cTg																																																																														
MLL2	0	MSKCC	GRCh37	12	49443932	49443932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1385	163	721	0	ENST00000301067.7:c.3439G>A	p.Glu1147Lys	p.E1147K	ENST00000301067	NM_003482.3	1147	Gaa/Aaa																																																																														
MLL2	0	MSKCC	GRCh37	12	49448533	49448533	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	112	480	0	ENST00000301067.7:c.178G>A	p.Gly60Arg	p.G60R	ENST00000301067	NM_003482.3	60	Ggg/Agg																																																																														
TBX3	0	MSKCC	GRCh37	12	115109813	115109813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1571	173	772	2	ENST00000257566.3:c.2065G>T	p.Gly689Cys	p.G689C	ENST00000257566	NM_016569.3	689	Ggc/Tgc																																																																														
TBX3	0	MSKCC	GRCh37	12	115109923	115109923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1525	172	754	0	ENST00000257566.3:c.1955G>T	p.Gly652Val	p.G652V	ENST00000257566	NM_016569.3	652	gGc/gTc																																																																														
TBX3	0	MSKCC	GRCh37	12	115120900	115120900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	99	522	1	ENST00000257566.3:c.106C>A	p.His36Asn	p.H36N	ENST00000257566	NM_016569.3	36	Cac/Aac																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514615	103514615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	181	374	0	ENST00000355739.4:c.1116G>T	p.Arg372Ser	p.R372S	ENST00000355739	NM_000123.3	372	agG/agT																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576193	88576193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	138	517	0	ENST00000360948.2:c.1480C>G	p.Leu494Val	p.L494V	ENST00000360948	NM_001012338.2	494	Ctg/Gtg																																																																														
AXIN1	0	MSKCC	GRCh37	16	347132	347132	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1289	245	901	1	ENST00000262320.3:c.1879G>T	p.Glu627Ter	p.E627*	ENST00000262320	NM_003502.3	627	Gag/Tag																																																																														
PLCG2	0	MSKCC	GRCh37	16	81972460	81972460	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	231	620	0	ENST00000359376.3:c.3253G>C	p.Val1085Leu	p.V1085L	ENST00000359376	NM_002661.3	1085	Gta/Cta																																																																														
PLCG2	0	MSKCC	GRCh37	16	81990420	81990420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	447	659	0	ENST00000359376.3:c.3691C>A	p.Leu1231Met	p.L1231M	ENST00000359376	NM_002661.3	1231	Ctg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	511	539	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
ERBB2	0	MSKCC	GRCh37	17	37868255	37868255	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	148	611	0	ENST00000269571.5:c.976G>C	p.Asp326His	p.D326H	ENST00000269571		326	Gat/Cat																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533718	63533718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	122	436	0	ENST00000307078.5:c.1436C>G	p.Ser479Cys	p.S479C	ENST00000307078	NM_004655.3	479	tCc/tGc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599996	10599997	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	584	825	1	ENST00000171111.5:c.1579_1580delinsTA	p.Gly527Tyr	p.G527Y	ENST00000171111	NM_203500.1	527	GGt/TAt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198288654	198288654	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	145	615	0	ENST00000335508.6:c.73C>G	p.Leu25Val	p.L25V	ENST00000335508	NM_012433.2	25	Ctt/Gtt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259223	36259223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	189	652	0	ENST00000300305.3:c.268G>T	p.Val90Leu	p.V90L	ENST00000300305		90	Gtg/Ttg																																																																														
FAT1	0	MSKCC	GRCh37	4	187524711	187524711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	452	725	0	ENST00000441802.2:c.10969G>T	p.Gly3657Cys	p.G3657C	ENST00000441802	NM_005245.3	3657	Ggt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112173481	112173481	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	78	368	0	ENST00000257430.4:c.2190G>T	p.Met730Ile	p.M730I	ENST00000257430	NM_000038.5	730	atG/atT																																																																														
CSF1R	0	MSKCC	GRCh37	5	149447876	149447876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	397	710	2	ENST00000286301.3:c.1528C>A	p.Pro510Thr	p.P510T	ENST00000286301	NM_005211.3	510	Ccg/Acg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508526	106508526	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	313	225	0	ENST00000359195.3:c.520G>T	p.Glu174Ter	p.E174*	ENST00000359195	NM_002649.2	174	Gag/Tag																																																																														
RXRA	0	MSKCC	GRCh37	9	137309036	137309036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1381	186	865	2	ENST00000481739.1:c.643C>T	p.Arg215Trp	p.R215W	ENST00000481739	NM_002957.4	215	Cgg/Tgg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400172	139400173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	177	740	0	ENST00000277541.6:c.4175dup	p.Gly1394ArgfsTer11	p.G1394Rfs*11	ENST00000277541	NM_017617.3	1392	ctg/ctTg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942027	44942027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	79	173	0	ENST00000377967.4:c.3277G>T	p.Asp1093Tyr	p.D1093Y	ENST00000377967	NM_021140.2	1093	Gac/Tac																																																																														
AR	0	MSKCC	GRCh37	X	66765229	66765229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	72	140	0	ENST00000374690.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000374690	NM_000044.3	81	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	54	722	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	0	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	38	264	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																																																														
SOX9	0	MSKCC	GRCh37	17	70120131	70120132	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0015417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	29	215	0	ENST00000245479.2:c.1134_1135dupGG	p.Ala379GlyfsTer5	p.A379Gfs*5	ENST00000245479	NM_000346.3	378	cag/caGGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	526	499	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CRLF2	0	MSKCC	GRCh37	X	1317539	1317539	+	downstream_gene_variant	3'Flank	SNP	C	C	G			P-0015422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	240	538	0				ENST00000381566																																																																																	
NOTCH4	0	MSKCC	GRCh37	6	32168751	32168751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	433	680	0	ENST00000375023.3:c.4172G>A	p.Arg1391His	p.R1391H	ENST00000375023	NM_004557.3	1391	cGc/cAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47041627	47041627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1404	213	675	2	ENST00000329236.7:c.1618G>A	p.Ala540Thr	p.A540T	ENST00000329236	NM_001204466.1	540	Gcc/Acc																																																																														
SPEN	0	MSKCC	GRCh37	1	16256762	16256762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	356	500	0	ENST00000375759.3:c.4027C>T	p.Gln1343Ter	p.Q1343*	ENST00000375759	NM_015001.2	1343	Cag/Tag																																																																														
CDH1	0	MSKCC	GRCh37	16	68857335	68857335	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	153	322	0	ENST00000261769.5:c.1971del	p.Leu658Ter	p.L658*	ENST00000261769	NM_004360.3	657	gCc/gc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	483	1085	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
TBX3	0	MSKCC	GRCh37	12	115115427	115115427	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	337	774	0	ENST00000257566.3:c.899C>G	p.Ala300Gly	p.A300G	ENST00000257566	NM_016569.3	300	gCa/gGa																																																																														
TBX3	0	MSKCC	GRCh37	12	115120804	115120805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	231	696	0	ENST00000257566.3:c.201dup	p.Leu68IlefsTer43	p.L68Ifs*43	ENST00000257566	NM_016569.3	67	-/A																																																																														
EZH2	0	MSKCC	GRCh37	7	148544272	148544272	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0015429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	84	528	0	ENST00000320356.2:c.117+2T>C		p.X39_splice	ENST00000320356	NM_004456.4	39																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0015430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	479	259	0	ENST00000274335.5:c.1727_1729delCGA	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	652	605	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt																																																																														
SOCS1	0	MSKCC	GRCh37	16	11348896	11348896	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	76	339	0	ENST00000332029.2:c.440T>G	p.Leu147Arg	p.L147R	ENST00000332029	NM_003745.1	147	cTc/cGc																																																																														
STAT5B	0	MSKCC	GRCh37	17	40354425	40354430	+	inframe_deletion	In_Frame_Del	DEL	TGGCGC	TGGCGC	-			P-0015430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1991	157	673	0	ENST00000293328.3:c.2165_2170del	p.Ser722_Ala723del	p.S722_A723del	ENST00000293328	NM_012448.3	722	aGCGCCAcg/acg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602639	10602639	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2174	116	488	0	ENST00000171111.5:c.939del	p.Thr314ArgfsTer3	p.T314Rfs*3	ENST00000171111	NM_203500.1	313	ccC/cc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157469845	157469896	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAGATGCATGGACAAGGGCCAAGCCAGCCATGTGGTGCTGTGCCCCTGGG	ACCAGATGCATGGACAAGGGCCAAGCCAGCCATGTGGTGCTGTGCCCCTGGG	-			P-0015430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	155	497	0	ENST00000346085.5:c.2641_2692del	p.Gln881GlufsTer16	p.Q881Efs*16	ENST00000346085	NM_020732.3	880	aACCAGATGCATGGACAAGGGCCAAGCCAGCCATGTGGTGCTGTGCCCCTGGGa/aa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157469821	157469831	+	frameshift_variant	Frame_Shift_Ins	INS	CCGGTATGGGT	CCGGTATGGGT	ACAGCACCACATGGCTGGCTTGGCCCTTGTCCATGC			P-0015430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	214	511	0	ENST00000346085.5:c.2615_2625delinsACAGCACCACATGGCTGGCTTGGCCCTTGTCCATGC	p.Pro872HisfsTer78	p.P872Hfs*78	ENST00000346085	NM_020732.3	872	cCCGGTATGGGT/cACAGCACCACATGGCTGGCTTGGCCCTTGTCCATGC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	151	375	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029454	16029454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	128	209	0	ENST00000268712.3:c.1576G>A	p.Glu526Lys	p.E526K	ENST00000268712	NM_006311.3	526	Gaa/Aaa																																																																														
ARID2	0	MSKCC	GRCh37	12	46243472	46243472	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	127	340	0	ENST00000334344.6:c.1825C>T	p.Gln609Ter	p.Q609*	ENST00000334344	NM_152641.2	609	Cag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	131	300	0	ENST00000171111.5:c.994G>T	p.Gly332Cys	p.G332C	ENST00000171111	NM_203500.1	332	Ggc/Tgc																																																																														
BIRC3	0	MSKCC	GRCh37	11	102207675	102207675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	85	177	0	ENST00000263464.3:c.1657G>A	p.Glu553Lys	p.E553K	ENST00000263464	NM_001165.4	553	Gaa/Aaa																																																																														
STK11	0	MSKCC	GRCh37	19	1220368	1220379	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGGTACTTCT	GCAGGTACTTCT	-			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	69	362	0	ENST00000326873.7:c.465-3_473del		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
PRKCI	0	MSKCC	GRCh37	3	170011239	170011239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	167	390	0	ENST00000295797.4:c.1360G>C	p.Asp454His	p.D454H	ENST00000295797	NM_002740.5	454	Gat/Cat																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247344	153247344	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	124	285	0	ENST00000281708.4:c.1458G>A	p.Trp486Ter	p.W486*	ENST00000281708	NM_033632.3	486	tgG/tgA																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249373	153249373	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	105	280	0	ENST00000281708.4:c.1405C>G	p.Leu469Val	p.L469V	ENST00000281708	NM_033632.3	469	Ctt/Gtt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67576837	67576837	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0015431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	74	178	0	ENST00000274335.5:c.916+3A>G		p.X306_splice	ENST00000274335		306																																																																															
ARID1A	0	MSKCC	GRCh37	1	27097611	27097612	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0015432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	237	410	0	ENST00000324856.7:c.3200_3201insG	p.Asn1068GlnfsTer37	p.N1068Qfs*37	ENST00000324856	NM_006015.4	1067	gtc/gtGc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912646	32912646	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	138	373	0	ENST00000380152.3:c.4154C>G	p.Ser1385Ter	p.S1385*	ENST00000380152		1385	tCa/tGa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420338	88420338	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	227	409	0	ENST00000360948.2:c.2348T>A	p.Ile783Asn	p.I783N	ENST00000360948	NM_001012338.2	783	aTt/aAt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71090535	71090572	+	frameshift_variant	Frame_Shift_Del	DEL	CATTATTAAGGAGGTCTTGGAAGGTGCAGAGGAGGAGA	CATTATTAAGGAGGTCTTGGAAGGTGCAGAGGAGGAGA	-			P-0015432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	148	283	0	ENST00000318789.4:c.776_813del	p.Val259GlufsTer23	p.V259Efs*23	ENST00000318789	NM_032682.5	259	gTCTCCTCCTCTGCACCTTCCAAGACCTCCTTAATAATG/g																																																																														
LYN	0	MSKCC	GRCh37	8	56854531	56854531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	142	415	1	ENST00000519728.1:c.113C>T	p.Ser38Phe	p.S38F	ENST00000519728	NM_002350.3	38	tCc/tTc																																																																														
BCOR	0	MSKCC	GRCh37	X	39931925	39931925	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	441	635	0	ENST00000378444.4:c.2674del	p.Leu892Ter	p.L892*	ENST00000378444	NM_001123385.1	892	Cta/ta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	165	414	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223541	53223541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	97	285	0	ENST00000375401.3:c.3818C>T	p.Pro1273Leu	p.P1273L	ENST00000375401	NM_004187.3	1273	cCc/cTc																																																																														
ATM	0	MSKCC	GRCh37	11	108143566	108143566	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	83	260	0	ENST00000278616.4:c.3271G>T	p.Glu1091Ter	p.E1091*	ENST00000278616	NM_000051.3	1091	Gag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108198462	108198462	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	82	284	0	ENST00000278616.4:c.7066A>T	p.Ile2356Phe	p.I2356F	ENST00000278616	NM_000051.3	2356	Atc/Ttc																																																																														
STK11	0	MSKCC	GRCh37	19	1219345	1219345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	201	499	0	ENST00000326873.7:c.397del	p.Val133CysfsTer28	p.V133Cfs*28	ENST00000326873	NM_000455.4	133	Gtg/tg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521690	89521690	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	52	321	0	ENST00000336596.2:c.2767G>C	p.Val923Leu	p.V923L	ENST00000336596	NM_005233.5	923	Gtc/Ctc																																																																														
CARD11	0	MSKCC	GRCh37	7	2953092	2953092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	156	463	0	ENST00000396946.4:c.2848C>A	p.Pro950Thr	p.P950T	ENST00000396946	NM_032415.4	950	Cct/Act																																																																														
RBM10	0	MSKCC	GRCh37	X	47039816	47039816	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	224	602	0	ENST00000329236.7:c.927-2A>T		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																															
MED12	0	MSKCC	GRCh37	X	70361745	70361745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	183	520	0	ENST00000374080.3:c.6421G>T	p.Gly2141Trp	p.G2141W	ENST00000374080		2141	Ggg/Tgg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934530	9934530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	119	418	1	ENST00000330684.3:c.1625G>T	p.Gly542Val	p.G542V	ENST00000330684	NM_001134407.1	542	gGc/gTc																																																																														
STK11	0	MSKCC	GRCh37	19	1218415	1218416	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0015440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	133	451	2	ENST00000326873.7:c.291-1_291delinsTT		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																															
NCOA3	0	MSKCC	GRCh37	20	46281303	46281303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	48	214	0	ENST00000371998.3:c.4100C>T	p.Ser1367Leu	p.S1367L	ENST00000371998		1367	tCa/tTa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62319693	62319693	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	87	614	0	ENST00000508582.2:c.1748T>G	p.Phe583Cys	p.F583C	ENST00000508582		583	tTc/tGc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390146	89390146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	44	328	1	ENST00000336596.2:c.895G>T	p.Asp299Tyr	p.D299Y	ENST00000336596	NM_005233.5	299	Gat/Tat																																																																														
KLF4	0	MSKCC	GRCh37	9	110250525	110250525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	53	355	0	ENST00000374672.4:c.150C>G	p.His50Gln	p.H50Q	ENST00000374672	NM_004235.4	50	caC/caG																																																																														
PTEN	0	MSKCC	GRCh37	10	89725047	89725047	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	48	251	0	ENST00000371953.3:c.1030A>T	p.Lys344Ter	p.K344*	ENST00000371953	NM_000314.4	344	Aag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	502	708	1	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	93	339	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa																																																																														
RFWD2	0	MSKCC	GRCh37	1	176015335	176015335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	87	338	0	ENST00000367669.3:c.1403C>A	p.Thr468Asn	p.T468N	ENST00000367669	NM_022457.5	468	aCc/aAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89624252	89624252	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	36	257	0	ENST00000371953.3:c.26T>A	p.Val9Asp	p.V9D	ENST00000371953	NM_000314.4	9	gTt/gAt																																																																														
POLE	0	MSKCC	GRCh37	12	133218273	133218273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	212	594	0	ENST00000320574.5:c.5338G>T	p.Ala1780Ser	p.A1780S	ENST00000320574	NM_006231.2	1780	Gcc/Tcc																																																																														
FLT3	0	MSKCC	GRCh37	13	28578251	28578251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	65	466	0	ENST00000241453.7:c.2920C>G	p.Pro974Ala	p.P974A	ENST00000241453	NM_004119.2	974	Cct/Gct																																																																														
RB1	0	MSKCC	GRCh37	13	48916734	48916734	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	77	310	0	ENST00000267163.4:c.266del		p.X89_splice	ENST00000267163	NM_000321.2	89																																																																															
ERBB4	0	MSKCC	GRCh37	2	212289021	212289021	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	120	406	0	ENST00000342788.4:c.2725A>T	p.Thr909Ser	p.T909S	ENST00000342788	NM_005235.2	909	Act/Tct																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	220	619	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9775669	9775669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	42	636	0	ENST00000377346.4:c.212C>G	p.Thr71Ser	p.T71S	ENST00000377346	NM_005026.3	71	aCc/aGc																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186505012	186505012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	101	353	0	ENST00000323963.5:c.868A>G	p.Thr290Ala	p.T290A	ENST00000323963		290	Act/Gct																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	125	555	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	95	554	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40911143	40911143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	64	497	2	ENST00000373198.4:c.2162G>A	p.Arg721His	p.R721H	ENST00000373198	NM_133170.3	721	cGt/cAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89693009	89693009	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0015446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	54	365	0	ENST00000371953.3:c.492+1G>C		p.X164_splice	ENST00000371953	NM_000314.4	164																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67591247	67591247	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0015446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	95	399	0	ENST00000274335.5:c.1746-1G>C		p.X582_splice	ENST00000274335		582																																																																															
ARID1A	0	MSKCC	GRCh37	1	27088759	27088759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	130	593	0	ENST00000324856.7:c.2368del	p.Gln790ArgfsTer43	p.Q790Rfs*43	ENST00000324856	NM_006015.4	790	Cag/ag																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310935	123310935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	38	331	0	ENST00000358487.5:c.493C>T	p.Arg165Trp	p.R165W	ENST00000358487	NM_000141.4	165	Cgg/Tgg																																																																														
MGA	0	MSKCC	GRCh37	15	41961363	41961363	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	58	358	0	ENST00000219905.7:c.271C>T	p.Arg91Ter	p.R91*	ENST00000219905	NM_001164273.1	91	Cga/Tga																																																																														
NF1	0	MSKCC	GRCh37	17	29548899	29548899	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	70	527	0	ENST00000358273.4:c.1673T>A	p.Ile558Asn	p.I558N	ENST00000358273	NM_001042492.2	558	aTt/aAt																																																																														
MLL4	0	MSKCC	GRCh37	19	36212320	36212320	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	135	649	0	ENST00000222270.7:c.2072del	p.Pro691LeufsTer37	p.P691Lfs*37	ENST00000222270	NM_014727.1	691	Cct/ct																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591077	67591077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	68	274	0	ENST00000274335.5:c.1670G>A	p.Arg557Gln	p.R557Q	ENST00000274335		557	cGa/cAa																																																																														
BCOR	0	MSKCC	GRCh37	X	39922300	39922300	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	78	269	0	ENST00000378444.4:c.3872C>A	p.Pro1291Gln	p.P1291Q	ENST00000378444	NM_001123385.1	1291	cCg/cAg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	168	571	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	81	629	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	190	753	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021081	31021111	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGCAGGCTGGGTTTGACCAAAGAAGAGTCA	TTGCAGGCTGGGTTTGACCAAAGAAGAGTCA	-			P-0015448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	82	437	0	ENST00000375687.4:c.1086_1116del		p.X362_splice	ENST00000375687	NM_015338.5	362																																																																															
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	140	457	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781475	3781475	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	126	271	0	ENST00000262367.5:c.4891-1G>A		p.X1631_splice	ENST00000262367	NM_004380.2	1631																																																																															
GPS2	0	MSKCC	GRCh37	17	7217875	7217875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	281	534	0	ENST00000380728.2:c.136G>A	p.Glu46Lys	p.E46K	ENST00000380728		46	Gaa/Aaa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11107038	11107038	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	216	359	0	ENST00000344626.4:c.1743G>C	p.Lys581Asn	p.K581N	ENST00000344626	NM_003072.3	581	aaG/aaC																																																																														
ASXL2	0	MSKCC	GRCh37	2	25973137	25973137	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	41	392	0	ENST00000435504.4:c.1288G>C	p.Glu430Gln	p.E430Q	ENST00000435504		430	Gag/Cag																																																																														
CUL3	0	MSKCC	GRCh37	2	225346708	225346708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	145	367	0	ENST00000264414.4:c.1930C>G	p.Leu644Val	p.L644V	ENST00000264414	NM_003590.4	644	Ctt/Gtt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	642	616	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356248	66356248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202046693		P-0015451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	324	512	0	ENST00000273854.3:c.1249C>T	p.Arg417Trp	p.R417W	ENST00000273854	NM_004439.5	417	Cgg/Tgg																																																																														
FAT1	0	MSKCC	GRCh37	4	187539207	187539208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0015451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	218	363	0	ENST00000441802.2:c.8531_8532dup	p.Met2845LeufsTer29	p.M2845Lfs*29	ENST00000441802	NM_005245.3	2844	-/TT																																																																														
MLL3	0	MSKCC	GRCh37	7	151949801	151949801	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	126	266	0	ENST00000262189.6:c.1300-1G>A		p.X434_splice	ENST00000262189	NM_170606.2	434																																																																															
TEK	0	MSKCC	GRCh37	9	27157860	27157860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	43	542	0	ENST00000380036.4:c.84G>C	p.Leu28Phe	p.L28F	ENST00000380036	NM_000459.3	28	ttG/ttC																																																																														
IGF1R	0	MSKCC	GRCh37	15	99442770	99442770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	242	778	0	ENST00000268035.6:c.1167G>C	p.Lys389Asn	p.K389N	ENST00000268035	NM_000875.3	389	aaG/aaC																																																																														
TP53	0	MSKCC	GRCh37	17	7579440	7579440	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	223	650	0	ENST00000269305.4:c.247G>C	p.Ala83Pro	p.A83P	ENST00000269305	NM_001126112.2	83	Gcg/Ccg																																																																														
TP53	0	MSKCC	GRCh37	17	7579561	7579577	+	frameshift_variant	Frame_Shift_Del	DEL	ATCATCCATTGCTTGGG	ATCATCCATTGCTTGGG	-			P-0015457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	214	784	0	ENST00000269305.4:c.110_126del	p.Ser37PhefsTer9	p.S37Ffs*9	ENST00000269305	NM_001126112.2	37	tCCCAAGCAATGGATGAT/t																																																																														
STK11	0	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0015459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	107	618	0	ENST00000326873.7:c.734+1G>C		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																															
CDKN2C	0	MSKCC	GRCh37	1	51439875	51439875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	49	455	0	ENST00000262662.1:c.440A>G	p.Tyr147Cys	p.Y147C	ENST00000262662		147	tAt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577107	7577118	+	inframe_deletion	In_Frame_Del	DEL	ACAGGCACAAAC	ACAGGCACAAAC	-			P-0015459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1305	219	889	0	ENST00000269305.4:c.820_831del	p.Val274_Cys277del	p.V274_C277del	ENST00000269305	NM_001126112.2	274	GTTTGTGCCTGT/-																																																																														
ERCC2	0	MSKCC	GRCh37	19	45854892	45854892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1516	131	1048	1	ENST00000391945.4:c.2278C>T	p.Leu760Phe	p.L760F	ENST00000391945	NM_000400.3	760	Ctc/Ttc																																																																														
GNAS	0	MSKCC	GRCh37	20	57480526	57480526	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	113	508	0	ENST00000371085.3:c.521G>C	p.Cys174Ser	p.C174S	ENST00000371085	NM_000516.4	174	tGt/tCt																																																																														
GATA2	0	MSKCC	GRCh37	3	128205019	128205019	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	105	722	0	ENST00000341105.2:c.422A>C	p.Tyr141Ser	p.Y141S	ENST00000341105	NM_032638.4	141	tAc/tCc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	85	562	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	41	630	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	71	245	0				ENST00000310581	NM_198253.2																																																																																
DNMT3A	0	MSKCC	GRCh37	2	25466845	25466845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	77	502	0	ENST00000264709.3:c.1858C>T	p.Pro620Ser	p.P620S	ENST00000264709	NM_175629.2	620	Cca/Tca																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120511	94120511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	18	403	0	ENST00000369303.4:c.540G>T	p.Lys180Asn	p.K180N	ENST00000369303	NM_004440.3	180	aaG/aaT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0015464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	86	584	2	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1207153	1207155	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1414068445		P-0015464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	344	1113	3	ENST00000326873.7:c.250_252del	p.Lys84del	p.K84del	ENST00000326873	NM_000455.4	81	AAG/-																																																																														
FGF4	0	MSKCC	GRCh37	11	69589552	69589552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	46	201	2	ENST00000168712.1:c.301G>A	p.Asp101Asn	p.D101N	ENST00000168712	NM_002007.2	101	Gac/Aac																																																																														
MLL	0	MSKCC	GRCh37	11	118344714	118344714	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	30	552	0	ENST00000534358.1:c.2840del	p.Ser947LeufsTer2	p.S947Lfs*2	ENST00000534358	NM_005933.3	947	tCt/tt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99459334	99459335	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTACCGGCACAATTACTGCTCCAAAGG			P-0015464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	92	483	0	ENST00000268035.6:c.1972_1996+2dup		p.L658_G667dup	ENST00000268035	NM_000875.3	658	ctt/ctTTACCGGCACAATTACTGCTCCAAAGGt																																																																														
MLL4	0	MSKCC	GRCh37	19	36218425	36218425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	252	626	2	ENST00000222270.7:c.4204C>T	p.Arg1402Ter	p.R1402*	ENST00000222270	NM_014727.1	1402	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	345	890	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
CSF3R	0	MSKCC	GRCh37	1	36937017	36937035	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCCAGCCCCCTTTACCT	CTGCCAGCCCCCTTTACCT	-			P-0015465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	117	361	0	ENST00000361632.4:c.1284_1285+17del		p.X428_splice	ENST00000361632		428																																																																															
RET	0	MSKCC	GRCh37	10	43607580	43607580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	212	824	0	ENST00000355710.3:c.1556G>T	p.Cys519Phe	p.C519F	ENST00000355710	NM_020975.4	519	tGt/tTt																																																																														
DICER1	0	MSKCC	GRCh37	14	95579434	95579434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	72	365	0	ENST00000343455.3:c.2035A>G	p.Ile679Val	p.I679V	ENST00000343455	NM_177438.2	679	Att/Gtt																																																																														
CYLD	0	MSKCC	GRCh37	16	50815215	50815215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	111	619	2	ENST00000398568.2:c.1568G>A	p.Cys523Tyr	p.C523Y	ENST00000398568	NM_001042412.1	523	tGt/tAt																																																																														
FLCN	0	MSKCC	GRCh37	17	17122374	17122374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	174	531	0	ENST00000285071.4:c.1021C>T	p.Arg341Trp	p.R341W	ENST00000285071	NM_144997.5	341	Cgg/Tgg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10274011	10274011	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1469	144	826	0	ENST00000340748.4:c.869C>G	p.Pro290Arg	p.P290R	ENST00000340748		290	cCc/cGc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198273092	198273092	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0015465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	110	536	0	ENST00000335508.6:c.1117+1G>T		p.X373_splice	ENST00000335508	NM_012433.2	373																																																																															
BARD1	0	MSKCC	GRCh37	2	215610499	215610499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	167	520	0	ENST00000260947.4:c.1757G>A	p.Ser586Asn	p.S586N	ENST00000260947	NM_000465.2	586	aGt/aAt																																																																														
EP300	0	MSKCC	GRCh37	22	41574887	41574887	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	184	809	0	ENST00000263253.7:c.7172C>G	p.Thr2391Arg	p.T2391R	ENST00000263253	NM_001429.3	2391	aCg/aGg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965722	93965722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	76	447	0	ENST00000369303.4:c.2206G>A	p.Val736Ile	p.V736I	ENST00000369303	NM_004440.3	736	Gta/Ata																																																																														
TSC1	0	MSKCC	GRCh37	9	135785961	135785961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	146	600	0	ENST00000298552.3:c.1260G>C	p.Arg420Ser	p.R420S	ENST00000298552	NM_001162426.1	420	agG/agC																																																																														
KIT	0	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1527	1585	982	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
ATM	0	MSKCC	GRCh37	11	108172385	108172385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	236	722	0	ENST00000278616.4:c.5188C>T	p.Arg1730Ter	p.R1730*	ENST00000278616	NM_000051.3	1730	Cga/Tga																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18793372	18793372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	101	732	1	ENST00000266497.5:c.4069G>A	p.Asp1357Asn	p.D1357N	ENST00000266497		1357	Gat/Aat																																																																														
FLT3	0	MSKCC	GRCh37	13	28589304	28589304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	116	695	0	ENST00000241453.7:c.2743A>G	p.Thr915Ala	p.T915A	ENST00000241453	NM_004119.2	915	Aca/Gca																																																																														
FLT1	0	MSKCC	GRCh37	13	29068962	29068962	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	73	310	1	ENST00000282397.4:c.19A>T	p.Thr7Ser	p.T7S	ENST00000282397	NM_002019.4	7	Acc/Tcc																																																																														
EZH1	0	MSKCC	GRCh37	17	40858118	40858118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	99	1355	3	ENST00000428826.2:c.1746C>G	p.Asp582Glu	p.D582E	ENST00000428826		582	gaC/gaG																																																																														
XRCC2	0	MSKCC	GRCh37	7	152346252	152346252	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	60	1140	0	ENST00000359321.1:c.318A>T	p.Glu106Asp	p.E106D	ENST00000359321	NM_005431.1	106	gaA/gaT																																																																														
PTPRS	0	MSKCC	GRCh37	19	5211749	5211749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	215	562	2	ENST00000357368.4:c.5086C>T	p.Arg1696Cys	p.R1696C	ENST00000357368	NM_002850.3	1696	Cgc/Tgc																																																																														
MLL2	0	MSKCC	GRCh37	12	49425298	49425304	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGGTA	CCAGGTA	-			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	192	596	0	ENST00000301067.7:c.13184_13190del	p.Val4395GlyfsTer6	p.V4395Gfs*6	ENST00000301067	NM_003482.3	4395	gTACCTGGg/gg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349373	89349386	+	frameshift_variant	Frame_Shift_Del	DEL	CGTCGGCAGCCCCT	CGTCGGCAGCCCCT	-			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	209	681	0	ENST00000301030.4:c.3564_3577del	p.Ala1190GlufsTer9	p.A1190Efs*9	ENST00000301030	NM_001256183.1	1188	cgAGGGGCTGCCGACGcg/cgcg																																																																														
TP53	0	MSKCC	GRCh37	17	7579363	7579364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	225	627	0	ENST00000269305.4:c.323dupG	p.Arg110ProfsTer39	p.R110Pfs*39	ENST00000269305	NM_001126112.2	108	ggt/ggGt																																																																														
NF1	0	MSKCC	GRCh37	17	29664601	29664601	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	319	371	0	ENST00000358273.4:c.6642+1G>T		p.X2214_splice	ENST00000358273	NM_001042492.2	2214																																																																															
PTPRT	0	MSKCC	GRCh37	20	40757429	40757429	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	191	523	0	ENST00000373198.4:c.2869C>G	p.Pro957Ala	p.P957A	ENST00000373198	NM_133170.3	957	Ccg/Gcg																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519643	137519643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	128	279	0	ENST00000367739.4:c.995C>G	p.Pro332Arg	p.P332R	ENST00000367739	NM_000416.2	332	cCa/cGa																																																																														
MLL3	0	MSKCC	GRCh37	7	151864416	151864416	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	124	345	0	ENST00000262189.6:c.9565C>T	p.Gln3189Ter	p.Q3189*	ENST00000262189	NM_170606.2	3189	Cag/Tag																																																																														
MLL3	0	MSKCC	GRCh37	7	151879274	151879274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	152	364	0	ENST00000262189.6:c.5671C>A	p.Pro1891Thr	p.P1891T	ENST00000262189	NM_170606.2	1891	Cca/Aca																																																																														
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	141	358	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458536	12458536	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs780238349		P-0015471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	164	443	1	ENST00000287820.6:c.1153C>T	p.Arg385Ter	p.R385*	ENST00000287820	NM_015869.4	385	Cga/Tga																																																																														
CD274	0	MSKCC	GRCh37	9	5462875	5462875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	73	164	0	ENST00000381577.3:c.436C>T	p.Pro146Ser	p.P146S	ENST00000381577	NM_014143.3	146	Cca/Tca																																																																														
APC	0	MSKCC	GRCh37	5	112174043	112174043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	277	332	1	ENST00000257430.4:c.2752G>T	p.Glu918Ter	p.E918*	ENST00000257430	NM_000038.5	918	Gag/Tag																																																																														
PALB2	0	MSKCC	GRCh37	16	23646393	23646393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	210	491	0	ENST00000261584.4:c.1474G>T	p.Gly492Trp	p.G492W	ENST00000261584	NM_024675.3	492	Ggg/Tgg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508473	106508473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	42	192	1	ENST00000359195.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000359195	NM_002649.2	156	gCg/gTg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120468281	120468282	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	171	472	0	ENST00000256646.2:c.4157_4158delinsTT	p.Gly1386Val	p.G1386V	ENST00000256646	NM_024408.3	1386	gGG/gTT																																																																														
CDC73	0	MSKCC	GRCh37	1	193111017	193111017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	327	234	0	ENST00000367435.3:c.550G>C	p.Ala184Pro	p.A184P	ENST00000367435	NM_024529.4	184	Gca/Cca																																																																														
PARP1	0	MSKCC	GRCh37	1	226590011	226590011	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	487	549	0	ENST00000366794.5:c.190A>T	p.Ile64Phe	p.I64F	ENST00000366794	NM_001618.3	64	Atc/Ttc																																																																														
PGR	0	MSKCC	GRCh37	11	100998510	100998510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	247	492	0	ENST00000325455.5:c.1292C>A	p.Pro431Gln	p.P431Q	ENST00000325455	NM_001202474.3	431	cCa/cAa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30107968	30107968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	227	485	0	ENST00000331968.5:c.839G>T	p.Arg280Leu	p.R280L	ENST00000331968	NM_002742.2	280	cGg/cTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845591	72845591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	136	525	1	ENST00000268489.5:c.3749C>T	p.Pro1250Leu	p.P1250L	ENST00000268489	NM_006885.3	1250	cCc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	183	514	1	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
NF1	0	MSKCC	GRCh37	17	29554291	29554304	+	frameshift_variant	Frame_Shift_Del	DEL	CACTGCAGGAAACA	CACTGCAGGAAACA	-			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	225	486	0	ENST00000358273.4:c.2308_2321del	p.Thr770Ter	p.T770*	ENST00000358273	NM_001042492.2	769	ccCACTGCAGGAAACAct/ccct																																																																														
NF1	0	MSKCC	GRCh37	17	29554309	29554309	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	326	518	0	ENST00000358273.4:c.2325G>T	p.Glu775Asp	p.E775D	ENST00000358273	NM_001042492.2	775	gaG/gaT																																																																														
CDK12	0	MSKCC	GRCh37	17	37618400	37618400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	85	354	0	ENST00000447079.4:c.76G>T	p.Gly26Ter	p.G26*	ENST00000447079	NM_015083.1	26	Gga/Tga																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4101030	4101030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	68	396	0	ENST00000262948.5:c.692G>T	p.Arg231Leu	p.R231L	ENST00000262948	NM_030662.3	231	cGc/cTc																																																																														
BRD4	0	MSKCC	GRCh37	19	15355565	15355565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	224	509	0	ENST00000263377.2:c.2167C>T	p.Pro723Ser	p.P723S	ENST00000263377	NM_058243.2	723	Ccg/Tcg																																																																														
BRD4	0	MSKCC	GRCh37	19	15375450	15375450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	98	512	0	ENST00000263377.2:c.977G>T	p.Arg326Leu	p.R326L	ENST00000263377	NM_058243.2	326	cGg/cTg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25471001	25471001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	144	471	0	ENST00000264709.3:c.760G>T	p.Ala254Ser	p.A254S	ENST00000264709	NM_175629.2	254	Gca/Tca																																																																														
ALK	0	MSKCC	GRCh37	2	29519809	29519809	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	114	510	0	ENST00000389048.3:c.1762G>T	p.Glu588Ter	p.E588*	ENST00000389048	NM_004304.4	588	Gaa/Taa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212286769	212286769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	300	408	0	ENST00000342788.4:c.2927G>A	p.Arg976Lys	p.R976K	ENST00000342788	NM_005235.2	976	aGg/aAg																																																																														
INHA	0	MSKCC	GRCh37	2	220439509	220439509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	151	434	0	ENST00000243786.2:c.362C>G	p.Thr121Arg	p.T121R	ENST00000243786	NM_002191.3	121	aCa/aGa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546669	9546669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	136	321	0	ENST00000353224.5:c.1353C>A	p.Asn451Lys	p.N451K	ENST00000353224	NM_177990.2	451	aaC/aaA																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643916	52643916	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	110	439	0	ENST00000394830.3:c.1980G>C	p.Gln660His	p.Q660H	ENST00000394830	NM_018313.4	660	caG/caC																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664910	138664910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	56	313	0	ENST00000330315.3:c.655C>G	p.Gln219Glu	p.Q219E	ENST00000330315	NM_023067.3	219	Cag/Gag																																																																														
FAT1	0	MSKCC	GRCh37	4	187629442	187629442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	192	561	0	ENST00000441802.2:c.1540C>T	p.His514Tyr	p.H514Y	ENST00000441802	NM_005245.3	514	Cat/Tat																																																																														
APC	0	MSKCC	GRCh37	5	112176902	112176902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	313	369	1	ENST00000257430.4:c.5611G>T	p.Asp1871Tyr	p.D1871Y	ENST00000257430	NM_000038.5	1871	Gat/Tat																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449626	149449626	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	69	454	0	ENST00000286301.3:c.1320G>T	p.Arg440Ser	p.R440S	ENST00000286301	NM_005211.3	440	agG/agT																																																																														
PMS2	0	MSKCC	GRCh37	7	6038812	6038812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	426	595	0	ENST00000265849.7:c.632G>C	p.Arg211Pro	p.R211P	ENST00000265849	NM_000535.5	211	cGa/cCa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509802	106509802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	408	536	1	ENST00000359195.3:c.1796G>C	p.Gly599Ala	p.G599A	ENST00000359195	NM_002649.2	599	gGa/gCa																																																																														
PREX2	0	MSKCC	GRCh37	8	68931786	68931786	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	169	360	0	ENST00000288368.4:c.216G>T	p.Met72Ile	p.M72I	ENST00000288368	NM_024870.2	72	atG/atT																																																																														
AGO2	0	MSKCC	GRCh37	8	141566022	141566022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	58	371	1	ENST00000220592.5:c.1242G>T	p.Gln414His	p.Q414H	ENST00000220592	NM_012154.3	414	caG/caT																																																																														
AR	0	MSKCC	GRCh37	X	66766439	66766439	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	48	273	0	ENST00000374690.3:c.1451C>G	p.Thr484Ser	p.T484S	ENST00000374690	NM_000044.3	484	aCt/aGt																																																																														
STAG2	0	MSKCC	GRCh37	X	123229236	123229236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	174	351	0	ENST00000218089.9:c.3720C>A	p.Asn1240Lys	p.N1240K	ENST00000218089	NM_001042749.1	1240	aaC/aaA																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860046	152860046	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	208	469	0	ENST00000406277.2:c.382A>T	p.Arg128Ter	p.R128*	ENST00000406277	NM_152274.4	128	Aga/Tga																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	242	235	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	135	234	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088699	27088699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1355	89	349	0	ENST00000324856.7:c.2308G>A	p.Ala770Thr	p.A770T	ENST00000324856	NM_006015.4	770	Gcc/Acc																																																																														
RB1	0	MSKCC	GRCh37	13	49047495	49047495	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	41	142	0	ENST00000267163.4:c.2490-1G>C		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
CREBBP	0	MSKCC	GRCh37	16	3778355	3778355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	129	239	0	ENST00000262367.5:c.6693C>A	p.Phe2231Leu	p.F2231L	ENST00000262367	NM_004380.2	2231	ttC/ttA																																																																														
CBFB	0	MSKCC	GRCh37	16	67100610	67100610	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	90	228	0	ENST00000412916.2:c.308T>G	p.Leu103Arg	p.L103R	ENST00000412916		103	cTg/cGg																																																																														
CDH1	0	MSKCC	GRCh37	16	68772310	68772311	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	154	255	0	ENST00000261769.5:c.160dup	p.Arg54LysfsTer5	p.R54Kfs*5	ENST00000261769	NM_004360.3	53	-/A																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732530	74732530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	35	58	0	ENST00000359995.5:c.379C>T	p.Arg127Cys	p.R127C	ENST00000359995	NM_001195427.1	127	Cgc/Tgc																																																																														
BCL6	0	MSKCC	GRCh37	3	187444668	187444668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	96	146	0	ENST00000232014.4:c.1559G>A	p.Cys520Tyr	p.C520Y	ENST00000232014	NM_001130845.1	520	tGc/tAc																																																																														
APC	0	MSKCC	GRCh37	5	112179431	112179431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	97	255	0	ENST00000257430.4:c.8140C>T	p.Arg2714Cys	p.R2714C	ENST00000257430	NM_000038.5	2714	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0015474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	68	178	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
JAK1	0	MSKCC	GRCh37	1	65335141	65335141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	212	322	0	ENST00000342505.4:c.500T>C	p.Val167Ala	p.V167A	ENST00000342505	NM_002227.2	167	gTg/gCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0015475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	63	250	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
DNMT1	0	MSKCC	GRCh37	19	10283798	10283798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201749864		P-0015476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	122	596	1	ENST00000340748.4:c.688C>T	p.Arg230Cys	p.R230C	ENST00000340748		230	Cgc/Tgc																																																																														
AXL	0	MSKCC	GRCh37	19	41758774	41758774	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	203	649	1	ENST00000301178.4:c.1828C>T	p.Arg610Ter	p.R610*	ENST00000301178	NM_021913.4	610	Cga/Tga																																																																														
EPAS1	0	MSKCC	GRCh37	2	46574091	46574091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	100	665	0	ENST00000263734.3:c.106G>C	p.Glu36Gln	p.E36Q	ENST00000263734	NM_001430.4	36	Gag/Cag																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138478013	138478055	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACCTGCTTAATATAAGAAATGGTAGCTTCCCGAGGTACCTCCA	ACCTGCTTAATATAAGAAATGGTAGCTTCCCGAGGTACCTCCA	-			P-0015476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	120	402	0	ENST00000289153.2:c.131_171+2del		p.X44_splice	ENST00000289153	NM_006219.2	44																																																																															
TCEB1	0	MSKCC	GRCh37	8	74868188	74868211	+	inframe_deletion	In_Frame_Del	DEL	CATGTTCTCTTTTTACAATAAATT	CATGTTCTCTTTTTACAATAAATT	-			P-0015476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	47	97	0	ENST00000284811.8:c.83_106del	p.Glu28_His35del	p.E28_H35del	ENST00000284811		28	gAATTTATTGTAAAAAGAGAACATGca/gca																																																																														
NBN	0	MSKCC	GRCh37	8	90976685	90976685	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2034	188	553	2	ENST00000265433.3:c.947del	p.Phe316SerfsTer2	p.F316Sfs*2	ENST00000265433	NM_002485.4	316	tTc/tc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	54	311	2	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	61	320	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	74	262	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	32	250	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	17	147	1	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	65	411	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741838	17741838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	21	140	0	ENST00000250003.3:c.509C>T	p.Ala170Val	p.A170V	ENST00000250003	NM_002478.4	170	gCg/gTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822709	72822709	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	49	451	0	ENST00000268489.5:c.9466A>G	p.Ser3156Gly	p.S3156G	ENST00000268489	NM_006885.3	3156	Agc/Ggc																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858244	27858244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	58	382	0	ENST00000359303.2:c.327C>A	p.Asn109Lys	p.N109K	ENST00000359303	NM_003535.2	109	aaC/aaA																																																																														
ATRX	0	MSKCC	GRCh37	X	76920182	76920182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	34	406	0	ENST00000373344.5:c.3895G>T	p.Gly1299Trp	p.G1299W	ENST00000373344	NM_000489.3	1299	Ggg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	91	371	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	62	440	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0015478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	34	443	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249457	153249457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	57	514	1	ENST00000281708.4:c.1321C>T	p.Arg441Trp	p.R441W	ENST00000281708	NM_033632.3	441	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100871	27100871	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	137	485	1	ENST00000324856.7:c.4153G>T	p.Glu1385Ter	p.E1385*	ENST00000324856	NM_006015.4	1385	Gaa/Taa																																																																														
PTEN	0	MSKCC	GRCh37	10	89653833	89653833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	44	429	0	ENST00000371953.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000371953	NM_000314.4	44	gGc/gAc																																																																														
MLL4	0	MSKCC	GRCh37	19	36211003	36211003	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1342	128	743	1	ENST00000222270.7:c.758del	p.Pro253HisfsTer7	p.P253Hfs*7	ENST00000222270	NM_014727.1	252	Ccc/cc																																																																														
NF1	0	MSKCC	GRCh37	17	29684345	29684345	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0015491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	165	290	0	ENST00000358273.4:c.7928T>G	p.Leu2643Ter	p.L2643*	ENST00000358273	NM_001042492.2	2643	tTa/tGa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264110	46264110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	97	203	0	ENST00000371998.3:c.1157G>A	p.Gly386Glu	p.G386E	ENST00000371998		386	gGg/gAg																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41749383	41749383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	112	172	0	ENST00000226382.2:c.412A>G	p.Thr138Ala	p.T138A	ENST00000226382	NM_003924.3	138	Aca/Gca																																																																														
GNAQ	0	MSKCC	GRCh37	9	80336346	80336346	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	129	271	0	ENST00000286548.4:c.973T>C	p.Tyr325His	p.Y325H	ENST00000286548	NM_002072.3	325	Tac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	118	475	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	15	276	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
BIRC3	0	MSKCC	GRCh37	11	102196028	102196028	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	34	169	0	ENST00000263464.3:c.788T>G	p.Phe263Cys	p.F263C	ENST00000263464	NM_001165.4	263	tTt/tGt																																																																														
MLL	0	MSKCC	GRCh37	11	118392851	118392851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	50	372	0	ENST00000534358.1:c.11883C>G	p.Asn3961Lys	p.N3961K	ENST00000534358	NM_005933.3	3961	aaC/aaG																																																																														
TSC2	0	MSKCC	GRCh37	16	2137939	2137939	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	101	462	0	ENST00000219476.3:c.5065A>G	p.Lys1689Glu	p.K1689E	ENST00000219476	NM_000548.3	1689	Aaa/Gaa																																																																														
STK11	0	MSKCC	GRCh37	19	1220652	1220653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	97	599	0	ENST00000326873.7:c.672dup	p.Ala225CysfsTer41	p.A225Cfs*41	ENST00000326873	NM_000455.4	224	att/aTtt																																																																														
PARK2	0	MSKCC	GRCh37	6	162475122	162475122	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0015492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	62	328	0	ENST00000366898.1:c.618+1G>T		p.X206_splice	ENST00000366898	NM_004562.2	206																																																																															
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0015494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	141	419	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
ESR1	0	MSKCC	GRCh37	6	152419958	152419958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	1227	333	0	ENST00000206249.3:c.1645C>G	p.Leu549Val	p.L549V	ENST00000206249	NM_000125.3	549	Cta/Gta																																																																														
MLL3	0	MSKCC	GRCh37	7	152012391	152012391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	62	189	0	ENST00000262189.6:c.422A>G	p.Glu141Gly	p.E141G	ENST00000262189	NM_170606.2	141	gAa/gGa																																																																														
VHL	0	MSKCC	GRCh37	3	10188279	10188280	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0015495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	218	440	0	ENST00000256474.2:c.422_423del	p.Asn141SerfsTer2	p.N141Sfs*2	ENST00000256474	NM_000551.3	141	aAT/a																																																																														
SETD2	0	MSKCC	GRCh37	3	47155459	47155459	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	33	315	0	ENST00000409792.3:c.4622A>C	p.Asn1541Thr	p.N1541T	ENST00000409792	NM_014159.6	1541	aAt/aCt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52651402	52651402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	131	395	0	ENST00000394830.3:c.1694C>T	p.Pro565Leu	p.P565L	ENST00000394830	NM_018313.4	565	cCa/cTa																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	188	173	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	904	493	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	260	401	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
AKT3	0	MSKCC	GRCh37	1	243859016	243859016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	281	192	0	ENST00000263826.5:c.49G>A	p.Glu17Lys	p.E17K	ENST00000263826	NM_005465.4	17	Gaa/Aaa																																																																														
MLL2	0	MSKCC	GRCh37	12	49431588	49431588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	296	429	1	ENST00000301067.7:c.9551C>T	p.Ser3184Phe	p.S3184F	ENST00000301067	NM_003482.3	3184	tCc/tTc																																																																														
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	173	371	0				ENST00000310581	NM_198253.2																																																																																
BRAF	0	MSKCC	GRCh37	7	140453146	140453146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	345	368	0	ENST00000288602.6:c.1789C>G	p.Leu597Val	p.L597V	ENST00000288602	NM_004333.4	597	Cta/Gta																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106733	27106734	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	54	409	0	ENST00000324856.7:c.6347_6348del	p.Arg2116ThrfsTer33	p.R2116Tfs*33	ENST00000324856	NM_006015.4	2115	cAG/c																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165882	118165882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	248	252	0	ENST00000369448.3:c.392C>T	p.Pro131Leu	p.P131L	ENST00000369448	NM_017709.3	131	cCa/cTa																																																																														
MLL2	0	MSKCC	GRCh37	12	49444307	49444307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	496	760	0	ENST00000301067.7:c.3064C>T	p.Pro1022Ser	p.P1022S	ENST00000301067	NM_003482.3	1022	Cct/Tct																																																																														
IRS2	0	MSKCC	GRCh37	13	110434944	110434946	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1355	209	774	0	ENST00000375856.3:c.3455_3457del	p.Phe1152del	p.F1152del	ENST00000375856	NM_003749.2	1152	tTCTcc/tcc																																																																														
MGA	0	MSKCC	GRCh37	15	41961891	41961891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	174	214	0	ENST00000219905.7:c.799C>T	p.Pro267Ser	p.P267S	ENST00000219905	NM_001164273.1	267	Ccc/Tcc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149441322	149441322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	345	505	0	ENST00000286301.3:c.1717G>A	p.Glu573Lys	p.E573K	ENST00000286301	NM_005211.3	573	Gag/Aag																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839886	27839886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	177	338	0	ENST00000328488.2:c.208C>T	p.Arg70Cys	p.R70C	ENST00000328488	NM_003533.2	70	Cgc/Tgc																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839921	27839921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1316	203	394	0	ENST00000328488.2:c.173C>A	p.Ser58Ter	p.S58*	ENST00000328488	NM_003533.2	58	tCg/tAg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100378	157100378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	158	185	2	ENST00000346085.5:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000346085	NM_020732.3	439	Gag/Aag																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900244	101900246	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	39	299	0	ENST00000374994.4:c.683_685del	p.Glu228del	p.E228del	ENST00000374994	NM_004612.2	226	ggAGAa/gga																																																																														
TSC1	0	MSKCC	GRCh37	9	135779172	135779172	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	64	281	2	ENST00000298552.3:c.2074C>T	p.Arg692Ter	p.R692*	ENST00000298552	NM_001162426.1	692	Cga/Tga																																																																														
TSC1	0	MSKCC	GRCh37	9	135798809	135798810	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0015498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	23	264	0	ENST00000298552.3:c.433_434del	p.Gln145ValfsTer8	p.Q145Vfs*8	ENST00000298552	NM_001162426.1	145	CAg/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	151	268	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	45	138	1	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																														
PAK1	0	MSKCC	GRCh37	11	77047310	77047310	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	49	248	0	ENST00000356341.3:c.1234G>C	p.Ala412Pro	p.A412P	ENST00000356341	NM_002576.4	412	Gca/Cca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	129	354	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	116	326	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	207	381	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MLL2	0	MSKCC	GRCh37	12	49440404	49440404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	245	489	0	ENST00000301067.7:c.4406G>A	p.Trp1469Ter	p.W1469*	ENST00000301067	NM_003482.3	1469	tGg/tAg																																																																														
MTOR	0	MSKCC	GRCh37	1	11174872	11174872	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	132	393	0	ENST00000361445.4:c.7162G>C	p.Glu2388Gln	p.E2388Q	ENST00000361445	NM_004958.3	2388	Gag/Cag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111452	8111452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	168	343	0	ENST00000346208.3:c.938C>T	p.Ala313Val	p.A313V	ENST00000346208		313	gCa/gTa																																																																														
RAD51B	0	MSKCC	GRCh37	14	68290327	68290327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	148	316	0	ENST00000487270.1:c.67C>G	p.Gln23Glu	p.Q23E	ENST00000487270	NM_133509.3	23	Cag/Gag																																																																														
CTCF	0	MSKCC	GRCh37	16	67645138	67645138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	193	441	1	ENST00000264010.4:c.403C>T	p.Gln135Ter	p.Q135*	ENST00000264010	NM_006565.3	135	Cag/Tag																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11998946	11998946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	26	208	0	ENST00000353533.5:c.448G>C	p.Asp150His	p.D150H	ENST00000353533	NM_003010.3	150	Gat/Cat																																																																														
NCOA3	0	MSKCC	GRCh37	20	46265432	46265432	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	28	232	0	ENST00000371998.3:c.2302C>G	p.Gln768Glu	p.Q768E	ENST00000371998		768	Cag/Gag																																																																														
SHQ1	0	MSKCC	GRCh37	3	72890251	72890251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200658486		P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	43	344	0	ENST00000325599.8:c.431C>T	p.Pro144Leu	p.P144L	ENST00000325599	NM_018130.2	144	cCg/cTg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259444	89259444	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	59	317	0	ENST00000336596.2:c.588A>C	p.Arg196Ser	p.R196S	ENST00000336596	NM_005233.5	196	agA/agC																																																																														
APC	0	MSKCC	GRCh37	5	112173962	112173962	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	121	256	0	ENST00000257430.4:c.2671A>C	p.Met891Leu	p.M891L	ENST00000257430	NM_000038.5	891	Atg/Ctg																																																																														
NSD1	0	MSKCC	GRCh37	5	176696618	176696618	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	46	159	0	ENST00000439151.2:c.5319G>C	p.Glu1773Asp	p.E1773D	ENST00000439151	NM_022455.4	1773	gaG/gaC																																																																														
HGF	0	MSKCC	GRCh37	7	81331961	81331961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	49	205	0	ENST00000222390.5:c.2123G>C	p.Arg708Pro	p.R708P	ENST00000222390	NM_000601.4	708	cGa/cCa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509603	106509603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	139	405	0	ENST00000359195.3:c.1597C>G	p.Gln533Glu	p.Q533E	ENST00000359195	NM_002649.2	533	Cag/Gag																																																																														
BTK	0	MSKCC	GRCh37	X	100615724	100615724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	196	212	1	ENST00000308731.7:c.608C>T	p.Pro203Leu	p.P203L	ENST00000308731	NM_000061.2	203	cCg/cTg																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651932	36651934	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CCG	CCG	A			P-0015501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	170	354	0	ENST00000244741.5:c.54_56delinsA	p.Cys18Ter	p.C18*	ENST00000244741	NM_000389.4	18	tgCCGc/tgAc																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	445	332	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	544	458	1	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	261	560	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																														
BRAF	0	MSKCC	GRCh37	7	140477794	140477794	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	106	323	0	ENST00000288602.6:c.1514T>A	p.Leu505His	p.L505H	ENST00000288602	NM_004333.4	505	cTc/cAc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149513462	149513462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	846	427	0	ENST00000261799.4:c.741G>T	p.Trp247Cys	p.W247C	ENST00000261799	NM_002609.3	247	tgG/tgT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100873	27100874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	544	361	0	ENST00000324856.7:c.4159dup	p.Glu1387GlyfsTer58	p.E1387Gfs*58	ENST00000324856	NM_006015.4	1385	-/G																																																																														
TET1	0	MSKCC	GRCh37	10	70333002	70333002	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	400	559	0	ENST00000373644.4:c.907A>T	p.Asn303Tyr	p.N303Y	ENST00000373644	NM_030625.2	303	Aat/Tat																																																																														
CHEK1	0	MSKCC	GRCh37	11	125514506	125514506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	149	274	1	ENST00000428830.2:c.1201G>T	p.Gly401Cys	p.G401C	ENST00000428830	NM_001114121.2	401	Ggc/Tgc																																																																														
TBX3	0	MSKCC	GRCh37	12	115114257	115114257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	144	381	0	ENST00000257566.3:c.960G>C	p.Gln320His	p.Q320H	ENST00000257566	NM_016569.3	320	caG/caC																																																																														
TSHR	0	MSKCC	GRCh37	14	81609474	81609474	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	135	331	0	ENST00000298171.2:c.1072G>C	p.Glu358Gln	p.E358Q	ENST00000298171	NM_000369.2	358	Gaa/Caa																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39550347	39550347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	122	361	0	ENST00000262039.4:c.458G>T	p.Gly153Val	p.G153V	ENST00000262039	NM_002647.2	153	gGa/gTa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877393	40877393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	448	419	0	ENST00000373198.4:c.2303G>T	p.Gly768Val	p.G768V	ENST00000373198	NM_133170.3	768	gGc/gTc																																																																														
TERT	0	MSKCC	GRCh37	5	1258745	1258745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	434	447	0	ENST00000310581.5:c.3000C>A	p.Asn1000Lys	p.N1000K	ENST00000310581	NM_198253.2	1000	aaC/aaA																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177083	56177083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	81	193	1	ENST00000399503.3:c.2353G>A	p.Glu785Lys	p.E785K	ENST00000399503	NM_005921.1	785	Gag/Aag																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538948	23538948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	212	401	1	ENST00000380871.4:c.491C>A	p.Thr164Lys	p.T164K	ENST00000380871	NM_006167.3	164	aCg/aAg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8339040	8339040	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	284	296	0	ENST00000356435.5:c.5261G>C	p.Cys1754Ser	p.C1754S	ENST00000356435		1754	tGt/tCt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484342	8484342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	239	346	1	ENST00000356435.5:c.3190G>T	p.Asp1064Tyr	p.D1064Y	ENST00000356435		1064	Gat/Tat																																																																														
PTCH1	0	MSKCC	GRCh37	9	98229398	98229398	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	81	156	0	ENST00000331920.6:c.2560G>A	p.Gly854Arg	p.G854R	ENST00000331920	NM_000264.3	854	Gga/Aga																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139393576	139393576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	266	463	1	ENST00000277541.6:c.6070G>T	p.Val2024Leu	p.V2024L	ENST00000277541	NM_017617.3	2024	Gta/Tta																																																																														
MED12	0	MSKCC	GRCh37	X	70343457	70343457	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	372	377	0	ENST00000374080.3:c.1631C>A	p.Ser544Ter	p.S544*	ENST00000374080		544	tCa/tAa																																																																														
ATRX	0	MSKCC	GRCh37	X	76940463	76940463	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	97	465	0	ENST00000373344.5:c.630C>A	p.Ser210Arg	p.S210R	ENST00000373344	NM_000489.3	210	agC/agA																																																																														
MED12	0	MSKCC	GRCh37	X	70339726	70339727	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AG	AG	T			P-0015510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	370	459	0	ENST00000374080.3:c.395_396delinsT	p.Lys132MetfsTer15	p.K132Mfs*15	ENST00000374080		132	aAG/aT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	597	308	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	352	263	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	323	386	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	572	290	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	572	290	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	126	200	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
TP63	0	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	300	234	0	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	173	312	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	290	265	0	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																																																														
INHBA	0	MSKCC	GRCh37	7	41729535	41729535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	309	336	0	ENST00000242208.4:c.994G>A	p.Asp332Asn	p.D332N	ENST00000242208	NM_002192.2	332	Gac/Aac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971186	21971187	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	572	300	1	ENST00000304494.5:c.171_172delCCinsTT	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	57	gcCCga/gcTTga																																																																														
MLL2	0	MSKCC	GRCh37	12	49445902	49445902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	636	707	0	ENST00000301067.7:c.1564C>T	p.Pro522Ser	p.P522S	ENST00000301067	NM_003482.3	522	Cca/Tca																																																																														
XPO1	0	MSKCC	GRCh37	2	61749764	61749764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	518	243	0	ENST00000401558.2:c.283C>T	p.Pro95Ser	p.P95S	ENST00000401558	NM_003400.3	95	Cca/Tca																																																																														
BARD1	0	MSKCC	GRCh37	2	215645336	215645336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	159	277	0	ENST00000260947.4:c.1262C>T	p.Ala421Val	p.A421V	ENST00000260947	NM_000465.2	421	gCt/gTt																																																																														
SRC	0	MSKCC	GRCh37	20	36031164	36031164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	269	389	0	ENST00000358208.4:c.1283C>T	p.Pro428Leu	p.P428L	ENST00000358208		428	cCc/cTc																																																																														
RHOA	0	MSKCC	GRCh37	3	49405920	49405920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	419	419	0	ENST00000418115.1:c.218C>T	p.Ser73Phe	p.S73F	ENST00000418115	NM_001664.2	73	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	888	383	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	0	MSKCC	GRCh37	17	7578493	7578500	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGCTG	CACAGCTG	-			P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	647	584	0	ENST00000269305.4:c.430_437del	p.Gln144GlyfsTer2	p.Q144Gfs*2	ENST00000269305	NM_001126112.2	144	CAGCTGTGg/g																																																																														
RET	0	MSKCC	GRCh37	10	43609011	43609011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	303	316	0	ENST00000355710.3:c.1767C>A	p.Ser589Arg	p.S589R	ENST00000355710	NM_020975.4	589	agC/agA																																																																														
IGF1R	0	MSKCC	GRCh37	15	99482514	99482514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	197	363	0	ENST00000268035.6:c.3382G>A	p.Ala1128Thr	p.A1128T	ENST00000268035	NM_000875.3	1128	Gcc/Acc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533721	63533721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	285	262	0	ENST00000307078.5:c.1433del	p.His478ProfsTer29	p.H478Pfs*29	ENST00000307078	NM_004655.3	478	cAc/cc																																																																														
ALK	0	MSKCC	GRCh37	2	29436932	29436932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	145	267	0	ENST00000389048.3:c.3661C>A	p.Leu1221Met	p.L1221M	ENST00000389048	NM_004304.4	1221	Ctg/Atg																																																																														
PREX2	0	MSKCC	GRCh37	8	68864658	68864658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	100	123	0	ENST00000288368.4:c.29G>A	p.Arg10His	p.R10H	ENST00000288368	NM_024870.2	10	cGc/cAc																																																																														
RB1	0	MSKCC	GRCh37	13	49047527	49047527	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	97	171	0	ENST00000267163.4:c.2520+1G>T		p.X840_splice	ENST00000267163	NM_000321.2	840																																																																															
KIT	0	MSKCC	GRCh37	4	55593610	55593630	+	inframe_deletion	In_Frame_Del	DEL	TTGTTGAGGAGATAAATGGAA	TTGTTGAGGAGATAAATGGAA	-			P-0015519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	225	323	0	ENST00000288135.5:c.1676_1696del	p.Val559_Asn566delinsAsp	p.V559_N566delinsD	ENST00000288135	NM_000222.2	559	gTTGTTGAGGAGATAAATGGAAac/gac																																																																														
RRAGC	0	MSKCC	GRCh37	1	39305249	39305249	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	505	350	0	ENST00000373001.3:c.1176T>A	p.Asn392Lys	p.N392K	ENST00000373001	NM_022157.3	392	aaT/aaA																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251637	212251637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	365	267	0	ENST00000342788.4:c.3422C>A	p.Pro1141Gln	p.P1141Q	ENST00000342788	NM_005235.2	1141	cCa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	130	429	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15974907	15974907	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	33	282	0	ENST00000268712.3:c.3968C>G	p.Pro1323Arg	p.P1323R	ENST00000268712	NM_006311.3	1323	cCt/cGt																																																																														
SOX17	0	MSKCC	GRCh37	8	55371838	55371838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	21	138	0	ENST00000297316.4:c.528G>A	p.Met176Ile	p.M176I	ENST00000297316	NM_022454.3	176	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	522	295	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	172	311	0				ENST00000310581	NM_198253.2																																																																																
ANKRD11	0	MSKCC	GRCh37	16	89341268	89341268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	84	199	2	ENST00000301030.4:c.7667C>T	p.Thr2556Met	p.T2556M	ENST00000301030	NM_001256183.1	2556	aCg/aTg																																																																														
AKT2	0	MSKCC	GRCh37	19	40748544	40748544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	210	441	1	ENST00000392038.2:c.338G>T	p.Arg113Leu	p.R113L	ENST00000392038	NM_001626.4	113	cGg/cTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40710583	40710583	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	185	421	0	ENST00000373198.4:c.4268T>G	p.Ile1423Ser	p.I1423S	ENST00000373198	NM_133170.3	1423	aTt/aGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0015524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	174	286	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0015524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	311	557	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281200	15281200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	366	817	1	ENST00000263388.2:c.5056G>T	p.Val1686Leu	p.V1686L	ENST00000263388	NM_000435.2	1686	Gtg/Ttg																																																																														
PAK7	0	MSKCC	GRCh37	20	9546603	9546603	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	99	445	0	ENST00000353224.5:c.1419A>C	p.Lys473Asn	p.K473N	ENST00000353224	NM_177990.2	473	aaA/aaC																																																																														
NBN	0	MSKCC	GRCh37	8	90965878	90965878	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	61	266	0	ENST00000265433.3:c.1439C>G	p.Ser480Ter	p.S480*	ENST00000265433	NM_002485.4	480	tCa/tGa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	29	197	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	35	425	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1615	116	850	1	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023724	27023740	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCCCCTCCGCGGCC	GCGGCCCCTCCGCGGCC	-			P-0015525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	83	487	0	ENST00000324856.7:c.831_847del	p.Gly278ArgfsTer116	p.G278Rfs*116	ENST00000324856	NM_006015.4	277	gGCGGCCCCTCCGCGGCC/g																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087932	27087932	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	87	625	0	ENST00000324856.7:c.2220del	p.Met741Ter	p.M741*	ENST00000324856	NM_006015.4	740	tCc/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	50	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0015528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	54	580	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231335	5231335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769069932		P-0015528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	36	505	1	ENST00000357368.4:c.2141G>A	p.Arg714His	p.R714H	ENST00000357368	NM_002850.3	714	cGc/cAc																																																																														
ATM	0	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	31	399	2	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	109	335	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SHOC2	0	MSKCC	GRCh37	10	112760241	112760241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	110	326	1	ENST00000369452.4:c.910G>T	p.Ala304Ser	p.A304S	ENST00000369452	NM_007373.3	304	Gca/Tca																																																																														
STK11	0	MSKCC	GRCh37	19	1220505	1220505	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	102	431	0	ENST00000326873.7:c.597+1G>A		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																															
KEAP1	0	MSKCC	GRCh37	19	10610239	10610252	+	protein_altering_variant	In_Frame_Del	DEL	GTTCATGACGTGGA	GTTCATGACGTGGA	AC			P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	119	513	2	ENST00000171111.5:c.458_471delinsGT	p.Leu153_Asn157delinsArg	p.L153_N157delinsR	ENST00000171111	NM_203500.1	153	cTCCACGTCATGAAC/cGT																																																																														
CIC	0	MSKCC	GRCh37	19	42796483	42796483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	132	586	2	ENST00000575354.2:c.3040G>T	p.Ala1014Ser	p.A1014S	ENST00000575354	NM_015125.3	1014	Gcg/Tcg																																																																														
CUL3	0	MSKCC	GRCh37	2	225379354	225379355	+	missense_variant	Missense_Mutation	DNP	CT	CT	GG			P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	103	478	0	ENST00000264414.4:c.513_514delinsCC	p.Arg171_Glu172delinsSerGln	p.R171_E172delinsSQ	ENST00000264414	NM_003590.4	171	agAGag/agCCag																																																																														
XRCC2	0	MSKCC	GRCh37	7	152345744	152345744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	35	137	0	ENST00000359321.1:c.826G>T	p.Gly276Trp	p.G276W	ENST00000359321	NM_005431.1	276	Ggg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	247	408	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	250	315	0				ENST00000310581	NM_198253.2																																																																																
RNF43	0	MSKCC	GRCh37	17	56435155	56435155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	192	546	0	ENST00000407977.2:c.1982C>T	p.Ser661Phe	p.S661F	ENST00000407977		661	tCc/tTc																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915886	127915886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	174	504	0	ENST00000373547.4:c.595C>T	p.Pro199Ser	p.P199S	ENST00000373547	NM_002721.4	199	Cct/Tct																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18650593	18650593	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	128	387	1	ENST00000266497.5:c.2804T>C	p.Leu935Pro	p.L935P	ENST00000266497		935	cTt/cCt																																																																														
FLT3	0	MSKCC	GRCh37	13	28644733	28644733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	110	280	0	ENST00000241453.7:c.60G>A	p.Met20Ile	p.M20I	ENST00000241453	NM_004119.2	20	atG/atA																																																																														
PMS1	0	MSKCC	GRCh37	2	190728574	190728574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	372	512	0	ENST00000441310.2:c.1962A>G	p.Ile654Met	p.I654M	ENST00000441310	NM_000534.4	654	atA/atG																																																																														
CD276	0	MSKCC	GRCh37	15	73995320	73995320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	37	109	0	ENST00000318443.5:c.626G>T	p.Arg209Leu	p.R209L	ENST00000318443	NM_001024736.1	209	cGg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	344	589	1	ENST00000269305.4:c.461delG	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	154	gGc/gc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212361	5212361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	308	505	2	ENST00000357368.4:c.4756G>T	p.Val1586Leu	p.V1586L	ENST00000357368	NM_002850.3	1586	Gtg/Ttg																																																																														
EIF4E	0	MSKCC	GRCh37	4	99850077	99850077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	393	534	0	ENST00000280892.6:c.47T>C	p.Met16Thr	p.M16T	ENST00000280892	NM_001130678.1	16	aTg/aCg																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197400	26197400	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	128	174	0	ENST00000356476.2:c.79C>T	p.Arg27Ter	p.R27*	ENST00000356476		27	Cga/Tga																																																																														
MLL3	0	MSKCC	GRCh37	7	151860647	151860647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	224	347	0	ENST00000262189.6:c.10015A>T	p.Ser3339Cys	p.S3339C	ENST00000262189	NM_170606.2	3339	Agt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	45	284	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0015533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	17	758	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
ANKRD11	0	MSKCC	GRCh37	16	89337277	89337292	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCGTTGAAACGGT	CGGGCGTTGAAACGGT	-			P-0015533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	12	545	0	ENST00000301030.4:c.7739_7754del	p.Asp2580AlafsTer17	p.D2580Afs*17	ENST00000301030	NM_001256183.1	2580	gACCGTTTCAACGCCCGc/gc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	32	391	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	126	527	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112170862	112170862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	40	290	0	ENST00000257430.4:c.1958G>A	p.Arg653Lys	p.R653K	ENST00000257430	NM_000038.5	653	aGg/aAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099968	27099968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	60	403	0	ENST00000324856.7:c.3847G>A	p.Gly1283Ser	p.G1283S	ENST00000324856	NM_006015.4	1283	Ggt/Agt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	133	704	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	105	443	2	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	297	729	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	36	333	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100171	157100172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	11	83	0	ENST00000346085.5:c.1114dupC	p.Arg372ProfsTer163	p.R372Pfs*163	ENST00000346085	NM_020732.3	370	tcc/tCcc																																																																														
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	154	1037	3	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																														
PTPRS	0	MSKCC	GRCh37	19	5240314	5240314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	68	927	1	ENST00000357368.4:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000357368	NM_002850.3	534	Gag/Aag																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	55	335	3	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15308382	15308383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	126	895	0	ENST00000263388.2:c.125dup	p.Cys43LeufsTer32	p.C43Lfs*32	ENST00000263388	NM_000435.2	42	cct/ccCt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279325	18279325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	138	674	1	ENST00000222254.8:c.1777G>A	p.Glu593Lys	p.E593K	ENST00000222254	NM_005027.3	593	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	134	668	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																														
CARD11	0	MSKCC	GRCh37	7	2968260	2968260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	198	886	1	ENST00000396946.4:c.1726C>T	p.Arg576Cys	p.R576C	ENST00000396946	NM_032415.4	576	Cgc/Tgc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	76	621	2	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	132	449	3	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	184	867	3	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31376726	31376726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	92	445	0	ENST00000328111.2:c.721G>A	p.Ala241Thr	p.A241T	ENST00000328111	NM_006892.3	241	Gcc/Acc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	132	869	3	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713896	30713899	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	114	639	0	ENST00000359013.4:c.1301_1304delCTGT	p.Ser434TrpfsTer21	p.S434Wfs*21	ENST00000359013	NM_001024847.2	432	acTCTG/ac																																																																														
IGF2	0	MSKCC	GRCh37	11	2154404	2154404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	213	960	0	ENST00000434045.2:c.524G>A	p.Trp175Ter	p.W175*	ENST00000434045	NM_001127598.1	175	tGg/tAg																																																																														
MITF	0	MSKCC	GRCh37	3	70014295	70014295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	151	752	1	ENST00000352241.4:c.1459G>A	p.Val487Ile	p.V487I	ENST00000352241	NM_198159.2	487	Gtc/Atc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023376	27023376	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	20	237	0	ENST00000324856.7:c.482T>C	p.Val161Ala	p.V161A	ENST00000324856	NM_006015.4	161	gTc/gCc																																																																														
TCF3	0	MSKCC	GRCh37	19	1622415	1622415	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	129	735	0	ENST00000344749.5:c.550-1G>T		p.X184_splice	ENST00000344749	NM_001136139.2	184																																																																															
MLL3	0	MSKCC	GRCh37	7	151836879	151836879	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	140	573	3	ENST00000262189.6:c.14344-3delT		p.X4782_splice	ENST00000262189	NM_170606.2	4782																																																																															
HLA-A	3105	MSKCC	GRCh37	6	29911141	29911141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	33	410	0	ENST00000376809.5:c.440A>G	p.Tyr147Cys	p.Y147C	ENST00000376809	NM_002116.7	147	tAc/tGc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	204	925	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	147	785	5	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
MUTYH	0	MSKCC	GRCh37	1	45795090	45795090	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	106	559	0	ENST00000372115.3:c.1496T>C	p.Val499Ala	p.V499A	ENST00000372115	NM_001048171.1	499	gTg/gCg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852298	63852298	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	132	676	1	ENST00000279873.7:c.3076A>G	p.Lys1026Glu	p.K1026E	ENST00000279873	NM_032199.2	1026	Aaa/Gaa																																																																														
PGR	0	MSKCC	GRCh37	11	100998685	100998685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	224	897	0	ENST00000325455.5:c.1117G>A	p.Ala373Thr	p.A373T	ENST00000325455	NM_001202474.3	373	Gcg/Acg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244140	46244140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	49	570	0	ENST00000334344.6:c.2234A>G	p.Gln745Arg	p.Q745R	ENST00000334344	NM_152641.2	745	cAg/cGg																																																																														
MLL2	0	MSKCC	GRCh37	12	49426774	49426774	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	41	435	6	ENST00000301067.7:c.11714A>T	p.Gln3905Leu	p.Q3905L	ENST00000301067	NM_003482.3	3905	cAg/cTg																																																																														
RAD51B	0	MSKCC	GRCh37	14	68292277	68292277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	115	414	0	ENST00000487270.1:c.181G>A	p.Ala61Thr	p.A61T	ENST00000487270	NM_133509.3	61	Gcc/Acc																																																																														
MGA	0	MSKCC	GRCh37	15	42052611	42052611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	116	541	0	ENST00000219905.7:c.7282C>T	p.His2428Tyr	p.H2428Y	ENST00000219905	NM_001164273.1	2428	Cac/Tac																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43708596	43708596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	129	689	1	ENST00000382044.4:c.4700G>T	p.Arg1567Met	p.R1567M	ENST00000382044	NM_001141980.1	1567	aGg/aTg																																																																														
CDK12	0	MSKCC	GRCh37	17	37627339	37627339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	177	858	2	ENST00000447079.4:c.1254G>T	p.Lys418Asn	p.K418N	ENST00000447079	NM_015083.1	418	aaG/aaT																																																																														
CDK12	0	MSKCC	GRCh37	17	37627745	37627745	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	160	938	0	ENST00000447079.4:c.1660T>A	p.Leu554Met	p.L554M	ENST00000447079	NM_015083.1	554	Ttg/Atg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37882063	37882064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	144	642	0	ENST00000269571.5:c.2835dup	p.Ile946HisfsTer5	p.I946Hfs*5	ENST00000269571		943	-/C																																																																														
STAT5B	0	MSKCC	GRCh37	17	40371789	40371789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	44	195	0	ENST00000293328.3:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000293328	NM_012448.3	208	Cag/Tag																																																																														
STAT3	0	MSKCC	GRCh37	17	40478132	40478132	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	139	594	1	ENST00000264657.5:c.1365+2T>C		p.X455_splice	ENST00000264657	NM_139276.2	455																																																																															
H3F3B	0	MSKCC	GRCh37	17	73774731	73774731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	46	176	0	ENST00000254810.4:c.356C>T	p.Thr119Ile	p.T119I	ENST00000254810	NM_005324.3	119	aCc/aTc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78617550	78617550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	106	475	0	ENST00000306801.3:c.288G>T	p.Gln96His	p.Q96H	ENST00000306801	NM_020761.2	96	caG/caT																																																																														
DNMT1	0	MSKCC	GRCh37	19	10262102	10262102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	170	771	3	ENST00000340748.4:c.2189G>A	p.Arg730His	p.R730H	ENST00000340748		730	cGc/cAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11113837	11113837	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	117	581	1	ENST00000344626.4:c.1943+2T>C		p.X648_splice	ENST00000344626	NM_003072.3	648																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15303035	15303035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777257132		P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	181	961	0	ENST00000263388.2:c.415G>A	p.Asp139Asn	p.D139N	ENST00000263388	NM_000435.2	139	Gat/Aat																																																																														
JAK3	0	MSKCC	GRCh37	19	17955064	17955064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	186	865	0	ENST00000458235.1:c.163G>A	p.Val55Met	p.V55M	ENST00000458235	NM_000215.3	55	Gtg/Atg																																																																														
CASP8	0	MSKCC	GRCh37	2	202136247	202136247	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	112	609	0	ENST00000358485.4:c.491T>A	p.Leu164His	p.L164H	ENST00000358485	NM_001080125.1	164	cTc/cAc																																																																														
IRS1	0	MSKCC	GRCh37	2	227659953	227659954	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	156	860	0	ENST00000305123.5:c.3501_3502del	p.Cys1167TrpfsTer11	p.C1167Wfs*11	ENST00000305123	NM_005544.2	1167	tgTGgg/tggg																																																																														
IRS1	0	MSKCC	GRCh37	2	227662572	227662572	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	105	515	0	ENST00000305123.5:c.883A>G	p.Ser295Gly	p.S295G	ENST00000305123	NM_005544.2	295	Agc/Ggc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264262	46264262	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	80	454	0	ENST00000371998.3:c.1309A>G	p.Ser437Gly	p.S437G	ENST00000371998		437	Agt/Ggt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967255	134967255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	129	669	1	ENST00000398015.3:c.2594G>T	p.Arg865Leu	p.R865L	ENST00000398015	NM_004441.4	865	cGg/cTg																																																																														
TET2	0	MSKCC	GRCh37	4	106158392	106158392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	81	373	1	ENST00000380013.4:c.3293C>T	p.Ala1098Val	p.A1098V	ENST00000380013	NM_001127208.2	1098	gCt/gTt																																																																														
FAT1	0	MSKCC	GRCh37	4	187524650	187524650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	185	862	0	ENST00000441802.2:c.11030A>G	p.Asp3677Gly	p.D3677G	ENST00000441802	NM_005245.3	3677	gAc/gGc																																																																														
MSH3	0	MSKCC	GRCh37	5	80040392	80040392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	129	608	0	ENST00000265081.6:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000265081	NM_002439.4	574	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112177307	112177307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	117	554	3	ENST00000257430.4:c.6016G>T	p.Gly2006Cys	p.G2006C	ENST00000257430	NM_000038.5	2006	Ggc/Tgc																																																																														
RAD50	0	MSKCC	GRCh37	5	131927072	131927072	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	96	581	0	ENST00000265335.6:c.1609C>T	p.Gln537Ter	p.Q537*	ENST00000265335		537	Caa/Taa																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056125	26056125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	121	515	0	ENST00000343677.2:c.532A>G	p.Lys178Glu	p.K178E	ENST00000343677	NM_005319.3	178	Aag/Gag																																																																														
AGO2	0	MSKCC	GRCh37	8	141561474	141561474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	234	589	0	ENST00000220592.5:c.1331C>T	p.Thr444Met	p.T444M	ENST00000220592	NM_012154.3	444	aCg/aTg																																																																														
KLF4	0	MSKCC	GRCh37	9	110249756	110249756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	131	823	0	ENST00000374672.4:c.919C>A	p.Leu307Met	p.L307M	ENST00000374672	NM_004235.4	307	Ctg/Atg																																																																														
TSC1	0	MSKCC	GRCh37	9	135801087	135801087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	111	577	0	ENST00000298552.3:c.250G>A	p.Ala84Thr	p.A84T	ENST00000298552	NM_001162426.1	84	Gcc/Acc																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841177	15841177	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	102	531	0	ENST00000307771.7:c.1261C>T	p.Arg421Ter	p.R421*	ENST00000307771	NM_005089.3	421	Cga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66765097	66765097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	117	709	1	ENST00000374690.3:c.109C>A	p.Pro37Thr	p.P37T	ENST00000374690	NM_000044.3	37	Ccg/Acg																																																																														
GNA11	0	MSKCC	GRCh37	19	3114979	3114991	+	frameshift_variant	Frame_Shift_Del	DEL	TACCTGCCCACCC	TACCTGCCCACCC	GACGTGCA			P-0015536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	178	778	2	ENST00000078429.4:c.514_526delinsGACGTGCA	p.Tyr172AspfsTer48	p.Y172Dfs*48	ENST00000078429	NM_002067.2	172	TACCTGCCCACCCag/GACGTGCAag																																																																														
PRDM1	0	MSKCC	GRCh37	6	106554919	106554919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	52	455	1	ENST00000369096.4:c.2036G>A	p.Arg679His	p.R679H	ENST00000369096	NM_001198.3	679	cGt/cAt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156837925	156837925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	833	756	0	ENST00000524377.1:c.458C>G	p.Ser153Cys	p.S153C	ENST00000524377	NM_002529.3	153	tCt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578229	+	inframe_deletion	In_Frame_Del	DEL	CACTATGTCGAAAAGTGTTTCTGTCAT	CACTATGTCGAAAAGTGTTTCTGTCAT	-			P-0015538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	786	780	1	ENST00000269305.4:c.620_646del	p.Asp207_Ser215del	p.D207_S215del	ENST00000269305	NM_001126112.2	207	gATGACAGAAACACTTTTCGACATAGTGtg/gtg																																																																														
MLL4	0	MSKCC	GRCh37	19	36212615	36212615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1895	165	836	0	ENST00000222270.7:c.2366A>G	p.Glu789Gly	p.E789G	ENST00000222270	NM_014727.1	789	gAg/gGg																																																																														
AXL	0	MSKCC	GRCh37	19	41759565	41759565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1416	331	785	2	ENST00000301178.4:c.1988T>C	p.Leu663Pro	p.L663P	ENST00000301178	NM_021913.4	663	cTg/cCg																																																																														
EP300	0	MSKCC	GRCh37	22	41572464	41572464	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201883596		P-0015538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	82	707	0	ENST00000263253.7:c.4993C>T	p.Arg1665Cys	p.R1665C	ENST00000263253	NM_001429.3	1665	Cgc/Tgc																																																																														
ROS1	0	MSKCC	GRCh37	6	117665410	117665410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	236	262	0	ENST00000368508.3:c.4337C>G	p.Ser1446Cys	p.S1446C	ENST00000368508	NM_002944.2	1446	tCt/tGt																																																																														
PREX2	0	MSKCC	GRCh37	8	69046328	69046328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	482	455	0	ENST00000288368.4:c.3801C>G	p.Phe1267Leu	p.F1267L	ENST00000288368	NM_024870.2	1267	ttC/ttG																																																																														
PREX2	0	MSKCC	GRCh37	8	69046476	69046476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	741	664	0	ENST00000288368.4:c.3949C>G	p.Leu1317Val	p.L1317V	ENST00000288368	NM_024870.2	1317	Ctt/Gtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	40	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577555	7577556	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGGAA			P-0015541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	53	513	0	ENST00000269305.4:c.720_725dup	p.Ser241_Cys242dup	p.S241_C242dup	ENST00000269305	NM_001126112.2	241	tgc/tgTTCCTGc																																																																														
TET2	0	MSKCC	GRCh37	4	106164902	106164902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	117	357	0	ENST00000380013.4:c.3770C>T	p.Thr1257Met	p.T1257M	ENST00000380013	NM_001127208.2	1257	aCg/aTg																																																																														
JUN	0	MSKCC	GRCh37	1	59248486	59248486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	369	497	0	ENST00000371222.2:c.257G>A	p.Gly86Glu	p.G86E	ENST00000371222	NM_002228.3	86	gGg/gAg																																																																														
MDM4	0	MSKCC	GRCh37	1	204518608	204518608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	231	415	0	ENST00000367182.3:c.1271C>A	p.Thr424Lys	p.T424K	ENST00000367182	NM_001278516.1	424	aCa/aAa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821520	72821520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	58	581	0	ENST00000268489.5:c.10655T>C	p.Leu3552Ser	p.L3552S	ENST00000268489	NM_006885.3	3552	tTg/tCg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348119	89348119	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	48	699	0	ENST00000301030.4:c.4831C>G	p.Leu1611Val	p.L1611V	ENST00000301030	NM_001256183.1	1611	Ctg/Gtg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89357185	89357185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	37	645	0	ENST00000301030.4:c.449C>T	p.Thr150Met	p.T150M	ENST00000301030	NM_001256183.1	150	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578542	7578543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCA			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	768	1021	0	ENST00000269305.4:c.384_387dup	p.Leu130CysfsTer20	p.L130Cfs*20	ENST00000269305	NM_001126112.2	129	-/TGCC																																																																														
RNF43	0	MSKCC	GRCh37	17	56435478	56435478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	121	508	0	ENST00000407977.2:c.1659C>G	p.His553Gln	p.H553Q	ENST00000407977		553	caC/caG																																																																														
SOX9	0	MSKCC	GRCh37	17	70119734	70119734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	206	746	0	ENST00000245479.2:c.736C>A	p.Gln246Lys	p.Q246K	ENST00000245479	NM_000346.3	246	Cag/Aag																																																																														
DNMT1	0	MSKCC	GRCh37	19	10267171	10267171	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	55	554	0	ENST00000340748.4:c.1247A>G	p.His416Arg	p.H416R	ENST00000340748		416	cAc/cGc																																																																														
CIC	0	MSKCC	GRCh37	19	42798714	42798755	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GCCGCTGCTGCAGCCTTGCCATGCTGCCTGTGCCCTGCACAG	GCCGCTGCTGCAGCCTTGCCATGCTGCCTGTGCCCTGCACAG	-			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	116	296	0	ENST00000575354.2:c.4328-41_4328del		p.X1443_splice	ENST00000575354	NM_015125.3	1443																																																																															
GNAS	0	MSKCC	GRCh37	20	57478772	57478772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	873	422	1	ENST00000371085.3:c.358G>T	p.Ala120Ser	p.A120S	ENST00000371085	NM_000516.4	120	Gcc/Tcc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62322234	62322283	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCAGGGGGCTGCTGGCCGCCCTGGAGCACAGCGAACAGCGGGCGGGGA	GCCCAGGGGGCTGCTGGCCGCCCTGGAGCACAGCGAACAGCGGGCGGGGA	-			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	84	827	0	ENST00000508582.2:c.2566_2615del	p.Arg856TrpfsTer16	p.R856Wfs*16	ENST00000508582		854	agGCCCAGGGGGCTGCTGGCCGCCCTGGAGCACAGCGAACAGCGGGCGGGGAgc/aggc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42851211	42851211	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	49	373	0	ENST00000398585.3:c.684-2A>T		p.X228_splice	ENST00000398585	NM_001135099.1	228																																																																															
SDHA	0	MSKCC	GRCh37	5	224592	224592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	67	617	0	ENST00000264932.6:c.268G>A	p.Val90Ile	p.V90I	ENST00000264932	NM_004168.2	90	Gtt/Att																																																																														
ROS1	0	MSKCC	GRCh37	6	117708988	117708988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	240	538	0	ENST00000368508.3:c.1969C>G	p.Pro657Ala	p.P657A	ENST00000368508	NM_002944.2	657	Cca/Gca																																																																														
FLT1	0	MSKCC	GRCh37	13	29001914	29001914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	57	596	3	ENST00000282397.4:c.1251C>A	p.Asn417Lys	p.N417K	ENST00000282397	NM_002019.4	417	aaC/aaA																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061228	38061228	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	279	509	0	ENST00000250448.2:c.761T>G	p.Phe254Cys	p.F254C	ENST00000250448	NM_004496.3	254	tTc/tGc																																																																														
ERF	0	MSKCC	GRCh37	19	42754692	42754692	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	40	306	0	ENST00000222329.4:c.48C>A	p.Tyr16Ter	p.Y16*	ENST00000222329	NM_006494.2	16	taC/taA																																																																														
JAK1	0	MSKCC	GRCh37	1	65323345	65323345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	257	305	0	ENST00000342505.4:c.1452G>T	p.Lys484Asn	p.K484N	ENST00000342505	NM_002227.2	484	aaG/aaT																																																																														
TET1	0	MSKCC	GRCh37	10	70406723	70406723	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	355	370	0	ENST00000373644.4:c.4237A>G	p.Ile1413Val	p.I1413V	ENST00000373644	NM_030625.2	1413	Ata/Gta																																																																														
WT1	0	MSKCC	GRCh37	11	32449571	32449571	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	473	440	0	ENST00000332351.3:c.803A>T	p.Tyr268Phe	p.Y268F	ENST00000332351	NM_024426.4	268	tAt/tTt																																																																														
CCND1	0	MSKCC	GRCh37	11	69462867	69462867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	455	449	0	ENST00000227507.2:c.680A>G	p.Tyr227Cys	p.Y227C	ENST00000227507	NM_053056.2	227	tAc/tGc																																																																														
CCND1	0	MSKCC	GRCh37	11	69462875	69462875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	442	458	0	ENST00000227507.2:c.688A>G	p.Thr230Ala	p.T230A	ENST00000227507	NM_053056.2	230	Aca/Gca																																																																														
INPPL1	0	MSKCC	GRCh37	11	71939543	71939543	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	620	488	0	ENST00000298229.2:c.397+1G>C		p.X133_splice	ENST00000298229	NM_001567.3	133																																																																															
SETD8	0	MSKCC	GRCh37	12	123888138	123888138	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	233	247	0	ENST00000330479.4:c.616A>C	p.Ile206Leu	p.I206L	ENST00000330479	NM_020382.3	206	Ata/Cta																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251742	212251742	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	199	208	0	ENST00000342788.4:c.3317G>T	p.Cys1106Phe	p.C1106F	ENST00000342788	NM_005235.2	1106	tGc/tTc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143044447	143044447	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	165	275	0	ENST00000262992.4:c.2015A>G	p.Tyr672Cys	p.Y672C	ENST00000262992	NM_001101669.1	672	tAc/tGc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157150479	157150479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	318	308	1	ENST00000346085.5:c.1661G>A	p.Gly554Asp	p.G554D	ENST00000346085	NM_020732.3	554	gGc/gAc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106523600	106523600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	195	330	0	ENST00000359195.3:c.2752G>A	p.Glu918Lys	p.E918K	ENST00000359195	NM_002649.2	918	Gaa/Aaa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396479	139396479	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	497	483	0	ENST00000277541.6:c.5446G>T	p.Glu1816Ter	p.E1816*	ENST00000277541	NM_017617.3	1816	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577068	7577069	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0015546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	1024	461	0	ENST00000269305.4:c.869_870delinsA	p.Arg290GlnfsTer55	p.R290Qfs*55	ENST00000269305	NM_001126112.2	290	cGC/cA																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	53	358	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	369	346	0				ENST00000310581	NM_198253.2																																																																																
MLL2	0	MSKCC	GRCh37	12	49427111	49427111	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	124	428	0	ENST00000301067.7:c.11377C>T	p.Gln3793Ter	p.Q3793*	ENST00000301067	NM_003482.3	3793	Caa/Taa																																																																														
MLL2	0	MSKCC	GRCh37	12	49425644	49425644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	210	621	3	ENST00000301067.7:c.12844C>T	p.Arg4282Ter	p.R4282*	ENST00000301067	NM_003482.3	4282	Cga/Tga																																																																														
MLL3	0	MSKCC	GRCh37	7	151878287	151878287	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	432	608	0	ENST00000262189.6:c.6658C>T	p.Gln2220Ter	p.Q2220*	ENST00000262189	NM_170606.2	2220	Cag/Tag																																																																														
WT1	0	MSKCC	GRCh37	11	32456352	32456352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	333	819	2	ENST00000332351.3:c.540C>A	p.Phe180Leu	p.F180L	ENST00000332351	NM_024426.4	180	ttC/ttA																																																																														
RECQL	0	MSKCC	GRCh37	12	21628612	21628612	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	155	471	0	ENST00000421138.2:c.1096C>T	p.Gln366Ter	p.Q366*	ENST00000421138		366	Cag/Tag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3823866	3823866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	251	645	0	ENST00000262367.5:c.2349G>A	p.Met783Ile	p.M783I	ENST00000262367	NM_004380.2	783	atG/atA																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11114057	11114057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	243	543	0	ENST00000344626.4:c.1985C>T	p.Ser662Leu	p.S662L	ENST00000344626	NM_003072.3	662	tCa/tTa																																																																														
MYD88	4615	MSKCC	GRCh37	3	38182052	38182052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1190702008		P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	186	421	0	ENST00000396334.3:c.676G>A	p.Glu226Lys	p.E226K	ENST00000396334	NM_002468.4	226	Gaa/Aaa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38978710	38978710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	255	519	0	ENST00000357387.3:c.796C>T	p.Pro266Ser	p.P266S	ENST00000357387	NM_152756.3	266	Cca/Tca																																																																														
NBN	0	MSKCC	GRCh37	8	90955507	90955507	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	162	536	0	ENST00000265433.3:c.2158G>C	p.Glu720Gln	p.E720Q	ENST00000265433	NM_002485.4	720	Gaa/Caa																																																																														
MYC	0	MSKCC	GRCh37	8	128751242	128751242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	150	344	0	ENST00000377970.2:c.779C>T	p.Pro260Leu	p.P260L	ENST00000377970	NM_002467.4	260	cCg/cTg																																																																														
TEK	0	MSKCC	GRCh37	9	27213572	27213572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	208	607	0	ENST00000380036.4:c.2968G>C	p.Glu990Gln	p.E990Q	ENST00000380036	NM_000459.3	990	Gag/Cag																																																																														
PTCH1	0	MSKCC	GRCh37	9	98212137	98212137	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	249	419	0	ENST00000331920.6:c.3535G>C	p.Gly1179Arg	p.G1179R	ENST00000331920	NM_000264.3	1179	Gga/Cga																																																																														
BCOR	0	MSKCC	GRCh37	X	39930311	39930311	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	310	687	0	ENST00000378444.4:c.3153G>C	p.Trp1051Cys	p.W1051C	ENST00000378444	NM_001123385.1	1051	tgG/tgC																																																																														
CDH1	0	MSKCC	GRCh37	16	68849567	68849570	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0015551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	223	733	0	ENST00000261769.5:c.1471_1474del	p.Lys491GlufsTer30	p.K491Efs*30	ENST00000261769	NM_004360.3	490	gaAAAG/ga																																																																														
RICTOR	0	MSKCC	GRCh37	5	38952378	38952378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	27	320	0	ENST00000357387.3:c.3047C>T	p.Ser1016Leu	p.S1016L	ENST00000357387	NM_152756.3	1016	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	37	614	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	58	608	0	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																																																														
XPO1	0	MSKCC	GRCh37	2	61726984	61726984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	41	567	0	ENST00000401558.2:c.454G>T	p.Asp152Tyr	p.D152Y	ENST00000401558	NM_003400.3	152	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0015553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	434	903	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088659	27088659	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	253	988	3	ENST00000324856.7:c.2272delC	p.Gln758ArgfsTer75	p.Q758Rfs*75	ENST00000324856	NM_006015.4	756	aaC/aa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30108079	30108079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	466	750	0	ENST00000331968.5:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000331968	NM_002742.2	243	cGa/cAa																																																																														
TSHR	0	MSKCC	GRCh37	14	81606158	81606158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	111	610	0	ENST00000298171.2:c.828C>A	p.Asp276Glu	p.D276E	ENST00000298171	NM_000369.2	276	gaC/gaA																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678626	88678626	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0015553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	37	341	0	ENST00000360948.2:c.910C>G	p.Pro304Ala	p.P304A	ENST00000360948	NM_001012338.2	304	Ccc/Gcc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3843386	3843386	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	74	265	0	ENST00000262367.5:c.1216+1G>A		p.X406_splice	ENST00000262367	NM_004380.2	406																																																																															
ALK	0	MSKCC	GRCh37	2	30143345	30143345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	265	804	0	ENST00000389048.3:c.181C>T	p.Pro61Ser	p.P61S	ENST00000389048	NM_004304.4	61	Ccc/Tcc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212587179	212587179	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	146	615	0	ENST00000342788.4:c.822A>C	p.Gln274His	p.Q274H	ENST00000342788	NM_005235.2	274	caA/caC																																																																														
SETD2	0	MSKCC	GRCh37	3	47103689	47103689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	304	438	0	ENST00000409792.3:c.6257C>A	p.Ser2086Tyr	p.S2086Y	ENST00000409792	NM_014159.6	2086	tCt/tAt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499712	8499712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	152	631	0	ENST00000356435.5:c.2257A>G	p.Arg753Gly	p.R753G	ENST00000356435		753	Agg/Ggg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	19	596	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	51	501	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602662	10602662	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	158	665	0	ENST00000171111.5:c.916G>T	p.Glu306Ter	p.E306*	ENST00000171111	NM_203500.1	306	Gag/Tag																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186503787	186503789	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0015556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	135	497	4	ENST00000323963.5:c.470_472del	p.Val157del	p.V157del	ENST00000323963		155	aTTGtt/att																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056429	26056429	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	49	256	0	ENST00000343677.2:c.228del	p.Asn76LysfsTer13	p.N76Kfs*13	ENST00000343677	NM_005319.3	76	aaC/aa																																																																														
LATS1	0	MSKCC	GRCh37	6	150023100	150023100	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	92	549	1	ENST00000253339.5:c.163A>T	p.Ser55Cys	p.S55C	ENST00000253339		55	Agt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	70	929	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
HGF	0	MSKCC	GRCh37	7	81374324	81374324	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	33	252	0	ENST00000222390.5:c.738G>C	p.Leu246Phe	p.L246F	ENST00000222390	NM_000601.4	246	ttG/ttC																																																																														
MYC	0	MSKCC	GRCh37	8	128752842	128752842	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	29	318	0	ENST00000377970.2:c.1003C>G	p.Pro335Ala	p.P335A	ENST00000377970	NM_002467.4	335	Cct/Gct																																																																														
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0015559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	168	654	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	279	360	2				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	97	417	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	138	532	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	47	194	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	123	360	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101468	27101468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	52	766	0	ENST00000324856.7:c.4750C>T	p.Gln1584Ter	p.Q1584*	ENST00000324856	NM_006015.4	1584	Cag/Tag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508565	106508565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	42	313	0	ENST00000359195.3:c.559G>A	p.Glu187Lys	p.E187K	ENST00000359195	NM_002649.2	187	Gag/Aag																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7989385	7989385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200663524		P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	126	711	1	ENST00000319144.4:c.301G>A	p.Ala101Thr	p.A101T	ENST00000319144	NM_001139.2	101	Gcc/Acc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56152567	56152567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	72	321	0	ENST00000399503.3:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000399503	NM_005921.1	208	cGa/cAa																																																																														
MPL	0	MSKCC	GRCh37	1	43812270	43812270	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	113	545	0	ENST00000372470.3:c.1135C>G	p.Leu379Val	p.L379V	ENST00000372470	NM_005373.2	379	Ctg/Gtg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981828	201981829	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	346	777	0	ENST00000359651.3:c.542_543dup	p.Gly182ProfsTer73	p.G182Pfs*73	ENST00000359651		180	cac/caCCc																																																																														
MLL2	0	MSKCC	GRCh37	12	49415628	49415628	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	134	354	0	ENST00000301067.7:c.16549G>C	p.Glu5517Gln	p.E5517Q	ENST00000301067	NM_003482.3	5517	Gag/Cag																																																																														
BRD4	0	MSKCC	GRCh37	19	15367942	15367942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	131	727	2	ENST00000263377.2:c.1384G>A	p.Glu462Lys	p.E462K	ENST00000263377	NM_058243.2	462	Gag/Aag																																																																														
BBC3	0	MSKCC	GRCh37	19	47729829	47729829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	81	670	0	ENST00000449228.1:c.560G>C	p.Arg187Pro	p.R187P	ENST00000449228	NM_001127240.2	187	cGa/cCa																																																																														
SETD2	0	MSKCC	GRCh37	3	47129689	47129689	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	109	583	0	ENST00000409792.3:c.5191G>C	p.Asp1731His	p.D1731H	ENST00000409792	NM_014159.6	1731	Gat/Cat																																																																														
SETD2	0	MSKCC	GRCh37	3	47163479	47163479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	236	321	0	ENST00000409792.3:c.2647C>T	p.Leu883Phe	p.L883F	ENST00000409792	NM_014159.6	883	Ctt/Ttt																																																																														
TET2	0	MSKCC	GRCh37	4	106197086	106197086	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	33	321	0	ENST00000380013.4:c.5419G>C	p.Asp1807His	p.D1807H	ENST00000380013	NM_001127208.2	1807	Gat/Cat																																																																														
INPP4B	0	MSKCC	GRCh37	4	143159098	143159098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	205	502	0	ENST00000262992.4:c.755G>A	p.Arg252Gln	p.R252Q	ENST00000262992	NM_001101669.1	252	cGa/cAa																																																																														
E2F3	0	MSKCC	GRCh37	6	20402576	20402576	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	38	299	0	ENST00000346618.3:c.113T>A	p.Leu38Gln	p.L38Q	ENST00000346618	NM_001949.4	38	cTg/cAg																																																																														
DAXX	0	MSKCC	GRCh37	6	33289023	33289023	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	66	572	0	ENST00000374542.5:c.529C>T	p.Gln177Ter	p.Q177*	ENST00000374542	NM_001141970.1	177	Cag/Tag																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651994	36651995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	208	607	0	ENST00000244741.5:c.119dup	p.Cys41LeufsTer7	p.C41Lfs*7	ENST00000244741	NM_000389.4	39	gcg/gcGg																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652025	36652025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	423	666	0	ENST00000244741.5:c.147G>T	p.Trp49Cys	p.W49C	ENST00000244741	NM_000389.4	49	tgG/tgT																																																																														
FYN	0	MSKCC	GRCh37	6	112024205	112024205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	57	303	0	ENST00000368678.4:c.580G>A	p.Asp194Asn	p.D194N	ENST00000368678		194	Gat/Aat																																																																														
RXRA	0	MSKCC	GRCh37	9	137320982	137320982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	260	852	0	ENST00000481739.1:c.939C>G	p.Phe313Leu	p.F313L	ENST00000481739	NM_002957.4	313	ttC/ttG																																																																														
KIT	0	MSKCC	GRCh37	4	55593613	55593613	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	82	518	0	ENST00000288135.5:c.1679T>A	p.Val560Asp	p.V560D	ENST00000288135	NM_000222.2	560	gTt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	273	540	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89720709	89720709	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	218	175	0	ENST00000371953.3:c.860C>G	p.Ser287Ter	p.S287*	ENST00000371953	NM_000314.4	287	tCa/tGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	136	768	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	180	446	0				ENST00000310581	NM_198253.2																																																																																
ETV6	0	MSKCC	GRCh37	12	12043881	12043881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	104	432	1	ENST00000396373.4:c.1260G>A	p.Met420Ile	p.M420I	ENST00000396373	NM_001987.4	420	atG/atA																																																																														
PTPRT	0	MSKCC	GRCh37	20	40709551	40709551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1263	116	638	0	ENST00000373198.4:c.4351G>C	p.Glu1451Gln	p.E1451Q	ENST00000373198	NM_133170.3	1451	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	283	612	1	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																														
IRS1	0	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	259	379	0	ENST00000305123.5:c.109G>C	p.Glu37Gln	p.E37Q	ENST00000305123	NM_005544.2	37	Gag/Cag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2132	252	1067	5	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27059204	27059204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	155	545	0	ENST00000324856.7:c.1841C>T	p.Ser614Leu	p.S614L	ENST00000324856	NM_006015.4	614	tCa/tTa																																																																														
RFWD2	0	MSKCC	GRCh37	1	176153815	176153815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	79	417	0	ENST00000367669.3:c.421G>C	p.Asp141His	p.D141H	ENST00000367669	NM_022457.5	141	Gat/Cat																																																																														
INPPL1	0	MSKCC	GRCh37	11	71946925	71946925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	193	857	0	ENST00000298229.2:c.2774C>G	p.Ser925Cys	p.S925C	ENST00000298229	NM_001567.3	925	tCc/tGc																																																																														
ETV6	0	MSKCC	GRCh37	12	11992203	11992203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	204	488	0	ENST00000396373.4:c.293C>G	p.Thr98Ser	p.T98S	ENST00000396373	NM_001987.4	98	aCc/aGc																																																																														
ETV6	0	MSKCC	GRCh37	12	12038881	12038881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	129	558	0	ENST00000396373.4:c.1174G>C	p.Glu392Gln	p.E392Q	ENST00000396373	NM_001987.4	392	Gag/Cag																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50481198	50481198	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	99	473	0	ENST00000394963.4:c.584C>G	p.Ser195Ter	p.S195*	ENST00000394963	NM_003076.4	195	tCa/tGa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32944543	32944543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	108	518	1	ENST00000380152.3:c.8336C>T	p.Ser2779Phe	p.S2779F	ENST00000380152		2779	tCt/tTt																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66777391	66777391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	141	757	0	ENST00000307102.5:c.757C>G	p.Leu253Val	p.L253V	ENST00000307102	NM_002755.3	253	Ctg/Gtg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9916278	9916278	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	112	495	0	ENST00000330684.3:c.2011C>T	p.Gln671Ter	p.Q671*	ENST00000330684	NM_001134407.1	671	Cag/Tag																																																																														
PALB2	0	MSKCC	GRCh37	16	23632700	23632700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	137	659	0	ENST00000261584.4:c.3096G>C	p.Met1032Ile	p.M1032I	ENST00000261584	NM_024675.3	1032	atG/atC																																																																														
NCOR1	0	MSKCC	GRCh37	17	15965075	15965075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	99	395	0	ENST00000268712.3:c.5521G>C	p.Glu1841Gln	p.E1841Q	ENST00000268712	NM_006311.3	1841	Gag/Cag																																																																														
NF1	0	MSKCC	GRCh37	17	29654842	29654842	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	71	277	0	ENST00000358273.4:c.5594C>G	p.Ser1865Cys	p.S1865C	ENST00000358273	NM_001042492.2	1865	tCt/tGt																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39617761	39617761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	90	475	0	ENST00000262039.4:c.1945C>G	p.Gln649Glu	p.Q649E	ENST00000262039	NM_002647.2	649	Caa/Gaa																																																																														
TCF3	0	MSKCC	GRCh37	19	1615717	1615717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	169	912	0	ENST00000344749.5:c.1554G>C	p.Lys518Asn	p.K518N	ENST00000344749	NM_001136139.2	518	aaG/aaC																																																																														
AXL	0	MSKCC	GRCh37	19	41765765	41765765	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	72	421	0	ENST00000301178.4:c.2641G>C	p.Asp881His	p.D881H	ENST00000301178	NM_021913.4	881	Gat/Cat																																																																														
EPAS1	0	MSKCC	GRCh37	2	46607603	46607603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	194	931	1	ENST00000263734.3:c.1792G>A	p.Glu598Lys	p.E598K	ENST00000263734	NM_001430.4	598	Gag/Aag																																																																														
BCL2L1	0	MSKCC	GRCh37	20	30309496	30309496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1432	158	667	1	ENST00000307677.4:c.526G>A	p.Asp176Asn	p.D176N	ENST00000307677	NM_138578.1	176	Gac/Aac																																																																														
ATR	0	MSKCC	GRCh37	3	142254967	142254967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	136	290	0	ENST00000350721.4:c.3802C>T	p.Leu1268Phe	p.L1268F	ENST00000350721	NM_001184.3	1268	Ctc/Ttc																																																																														
APC	0	MSKCC	GRCh37	5	112137046	112137046	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	141	608	0	ENST00000257430.4:c.800G>C	p.Gly267Ala	p.G267A	ENST00000257430	NM_000038.5	267	gGa/gCa																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056500	26056500	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	53	197	0	ENST00000343677.2:c.157G>C	p.Glu53Gln	p.E53Q	ENST00000343677	NM_005319.3	53	Gag/Cag																																																																														
CARD11	0	MSKCC	GRCh37	7	2974188	2974188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	191	702	0	ENST00000396946.4:c.1417G>C	p.Glu473Gln	p.E473Q	ENST00000396946	NM_032415.4	473	Gaa/Caa																																																																														
RAC1	0	MSKCC	GRCh37	7	6426870	6426870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	125	458	0	ENST00000356142.4:c.63C>G	p.Ile21Met	p.I21M	ENST00000356142	NM_018890.3	21	atC/atG																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513165	106513165	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	46	219	0	ENST00000359195.3:c.2069G>C	p.Arg690Thr	p.R690T	ENST00000359195	NM_002649.2	690	aGa/aCa																																																																														
SOX17	0	MSKCC	GRCh37	8	55372190	55372190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	113	411	1	ENST00000297316.4:c.880C>T	p.His294Tyr	p.H294Y	ENST00000297316	NM_022454.3	294	Cac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	222	778	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	50	613	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604796	48604798	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	45	559	0	ENST00000342988.3:c.1619_1621delTTC	p.Leu540del	p.L540del	ENST00000342988	NM_005359.5	540	CTT/-																																																																														
NF1	0	MSKCC	GRCh37	17	29528489	29528489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	391	830	0	ENST00000358273.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000358273	NM_001042492.2	416	Cga/Tga																																																																														
JUN	0	MSKCC	GRCh37	1	59248409	59248409	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	135	407	0	ENST00000371222.2:c.334G>C	p.Glu112Gln	p.E112Q	ENST00000371222	NM_002228.3	112	Gag/Cag																																																																														
MTOR	0	MSKCC	GRCh37	1	11300363	11300363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	122	425	0	ENST00000361445.4:c.1783G>C	p.Glu595Gln	p.E595Q	ENST00000361445	NM_004958.3	595	Gaa/Caa																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643647	38643647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	212	620	1	ENST00000299084.4:c.1117G>A	p.Glu373Lys	p.E373K	ENST00000299084	NM_152594.2	373	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68845638	68845673	+	inframe_deletion	In_Frame_Del	DEL	CCTACAATGCCGCCATCGCTTACACCATCCTCAGCC	CCTACAATGCCGCCATCGCTTACACCATCCTCAGCC	-			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	358	929	0	ENST00000261769.5:c.884_919del	p.Thr295_Gln307delinsLys	p.T295_Q307delinsK	ENST00000261769	NM_004360.3	295	aCCTACAATGCCGCCATCGCTTACACCATCCTCAGCCaa/aaa																																																																														
GPS2	0	MSKCC	GRCh37	17	7217683	7217683	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	356	599	0	ENST00000380728.2:c.244G>T	p.Glu82Ter	p.E82*	ENST00000380728		82	Gag/Tag																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016634	12016634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	319	452	0	ENST00000353533.5:c.770C>G	p.Ser257Cys	p.S257C	ENST00000353533	NM_003010.3	257	tCt/tGt																																																																														
CIC	0	MSKCC	GRCh37	19	42797279	42797279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	278	869	0	ENST00000575354.2:c.3641G>A	p.Arg1214Gln	p.R1214Q	ENST00000575354	NM_015125.3	1214	cGa/cAa																																																																														
MITF	0	MSKCC	GRCh37	3	69990420	69990420	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	153	508	0	ENST00000352241.4:c.700G>C	p.Glu234Gln	p.E234Q	ENST00000352241	NM_198159.2	234	Gaa/Caa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967167	134967167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	153	427	1	ENST00000398015.3:c.2506G>A	p.Ala836Thr	p.A836T	ENST00000398015	NM_004441.4	836	Gcc/Acc																																																																														
TET2	0	MSKCC	GRCh37	4	106155793	106155793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	201	518	0	ENST00000380013.4:c.694C>A	p.Gln232Lys	p.Q232K	ENST00000380013	NM_001127208.2	232	Caa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112175091	112175091	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	66	232	0	ENST00000257430.4:c.3800C>G	p.Thr1267Ser	p.T1267S	ENST00000257430	NM_000038.5	1267	aCt/aGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	547	801	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	157	235	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
KDR	0	MSKCC	GRCh37	4	55958789	55958789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	323	649	0	ENST00000263923.4:c.3064C>T	p.Arg1022Ter	p.R1022*	ENST00000263923	NM_002253.2	1022	Cga/Tga																																																																														
WT1	0	MSKCC	GRCh37	11	32450139	32450139	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	188	580	0	ENST00000332351.3:c.673A>G	p.Thr225Ala	p.T225A	ENST00000332351	NM_024426.4	225	Acg/Gcg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30046524	30046524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	90	556	0	ENST00000331968.5:c.2659C>G	p.Pro887Ala	p.P887A	ENST00000331968	NM_002742.2	887	Cca/Gca																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944554	40944554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	1056	587	0	ENST00000373198.4:c.1948G>A	p.Val650Met	p.V650M	ENST00000373198	NM_133170.3	650	Gtg/Atg																																																																														
APC	0	MSKCC	GRCh37	5	112173306	112173316	+	frameshift_variant	Frame_Shift_Del	DEL	ATAGTTTGACA	ATAGTTTGACA	-			P-0015566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	90	288	0	ENST00000257430.4:c.2020_2030del	p.Leu674GlnfsTer2	p.L674Qfs*2	ENST00000257430	NM_000038.5	672	cATAGTTTGACA/c																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871060	12871070	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGTGCCTGC	AAGGTGCCTGC	-			P-0015568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	112	307	0	ENST00000228872.4:c.295_305delTGCAAGGTGCC	p.Cys99GlyfsTer22	p.C99Gfs*22	ENST00000228872	NM_004064.3	96	aAAGGTGCCTGC/a																																																																														
GATA3	0	MSKCC	GRCh37	10	8115854	8115855	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	74	671	0	ENST00000346208.3:c.1200_1201insC	p.Ser401LeufsTer106	p.S401Lfs*106	ENST00000346208		400	-/C																																																																														
MEN1	0	MSKCC	GRCh37	11	64575562	64575588	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATTTGGTGCCTGTGGAAGGGGGAGGT	AATTTGGTGCCTGTGGAAGGGGGAGGT	-			P-0015568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	12	478	0	ENST00000337652.1:c.461-17_470del		p.X154_splice	ENST00000337652	NM_130803.2	154																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	221	474	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914004	32914004	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	58	533	0	ENST00000380152.3:c.5512G>C	p.Glu1838Gln	p.E1838Q	ENST00000380152		1838	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	196	737	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	105	363	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	174	693	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ROS1	0	MSKCC	GRCh37	6	117746743	117746743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	111	572	0	ENST00000368508.3:c.77A>G	p.Gln26Arg	p.Q26R	ENST00000368508	NM_002944.2	26	cAg/cGg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	176	494	8	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
TP53	0	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	173	680	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																														
JAK1	0	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	110	403	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
ERG	0	MSKCC	GRCh37	21	39764347	39764347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	193	672	3	ENST00000288319.7:c.765del	p.Arg256GlyfsTer35	p.R256Gfs*35	ENST00000288319	NM_182918.3	255	ccC/cc																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24159109	24159109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	99	445	0	ENST00000263121.7:c.781C>T	p.Arg261Cys	p.R261C	ENST00000263121	NM_003073.3	261	Cgc/Tgc																																																																														
EGFL7	0	MSKCC	GRCh37	9	139563029	139563029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	236	794	1	ENST00000308874.7:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000308874		34	cGg/cAg																																																																														
ARAF	0	MSKCC	GRCh37	X	47424734	47424734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	39	303	0	ENST00000377045.4:c.547delC	p.Gln183ArgfsTer109	p.Q183Rfs*109	ENST00000377045	NM_001654.4	181	aCc/ac																																																																														
CENPA	0	MSKCC	GRCh37	2	27015052	27015052	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	160	612	0	ENST00000335756.4:c.154C>T	p.Arg52Ter	p.R52*	ENST00000335756	NM_001809.3	52	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	88	502	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																														
CBFB	0	MSKCC	GRCh37	16	67063358	67063359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	131	525	0	ENST00000412916.2:c.54dupT	p.Arg19Ter	p.R19*	ENST00000412916		16	-/T																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	76	396	1	ENST00000380152.3:c.1813delA	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11135079	11135079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	278	894	0	ENST00000344626.4:c.3046G>A	p.Val1016Met	p.V1016M	ENST00000344626	NM_003072.3	1016	Gtg/Atg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	86	317	2	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99179952	99179952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	212	786	2	ENST00000074304.5:c.1895C>T	p.Pro632Leu	p.P632L	ENST00000074304	NM_001134224.1	632	cCg/cTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	204	848	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780673	9780673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	222	826	0	ENST00000377346.4:c.1475T>C	p.Leu492Ser	p.L492S	ENST00000377346	NM_005026.3	492	tTg/tCg																																																																														
MTOR	0	MSKCC	GRCh37	1	11298651	11298651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	167	696	1	ENST00000361445.4:c.1810C>T	p.Arg604Cys	p.R604C	ENST00000361445	NM_004958.3	604	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101421	27101421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	194	678	1	ENST00000324856.7:c.4703C>T	p.Pro1568Leu	p.P1568L	ENST00000324856	NM_006015.4	1568	cCt/cTt																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699214	117699214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	108	461	0	ENST00000369458.3:c.427C>A	p.Leu143Ile	p.L143I	ENST00000369458	NM_024626.3	143	Ctt/Att																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612801	228612801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	180	572	1	ENST00000366696.1:c.226G>A	p.Ala76Thr	p.A76T	ENST00000366696	NM_003493.2	76	Gct/Act																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741762	17741762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	200	742	0	ENST00000250003.3:c.433C>T	p.Pro145Ser	p.P145S	ENST00000250003	NM_002478.4	145	Ccc/Tcc																																																																														
KDM5A	0	MSKCC	GRCh37	12	430249	430249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	109	470	1	ENST00000399788.2:c.2453G>A	p.Arg818Gln	p.R818Q	ENST00000399788	NM_001042603.1	818	cGg/cAg																																																																														
RAD52	0	MSKCC	GRCh37	12	1023602	1023602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	118	520	0	ENST00000358495.3:c.962T>C	p.Leu321Ser	p.L321S	ENST00000358495	NM_134424.2	321	tTa/tCa																																																																														
ETV6	0	MSKCC	GRCh37	12	11905496	11905496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	100	298	1	ENST00000396373.4:c.146G>A	p.Arg49His	p.R49H	ENST00000396373	NM_001987.4	49	cGc/cAc																																																																														
MLL2	0	MSKCC	GRCh37	12	49418457	49418460	+	frameshift_variant	Frame_Shift_Del	DEL	AATA	AATA	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	175	634	0	ENST00000301067.7:c.15953_15956del	p.Leu5318SerfsTer14	p.L5318Sfs*14	ENST00000301067	NM_003482.3	5318	tTATTc/tc																																																																														
MLL2	0	MSKCC	GRCh37	12	49427869	49427869	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	188	600	0	ENST00000301067.7:c.10721T>A	p.Ile3574Asn	p.I3574N	ENST00000301067	NM_003482.3	3574	aTc/aAc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56494970	56494970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	183	615	0	ENST00000267101.3:c.3327G>T	p.Gln1109His	p.Q1109H	ENST00000267101	NM_001982.3	1109	caG/caT																																																																														
PRKD1	0	MSKCC	GRCh37	14	30066796	30066796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201010570		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	161	586	0	ENST00000331968.5:c.2335G>A	p.Gly779Ser	p.G779S	ENST00000331968	NM_002742.2	779	Ggc/Agc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3790545	3790545	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	185	512	0	ENST00000262367.5:c.3988C>T	p.Gln1330Ter	p.Q1330*	ENST00000262367	NM_004380.2	1330	Cag/Tag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349313	89349313	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	295	1041	0	ENST00000301030.4:c.3637T>C	p.Ser1213Pro	p.S1213P	ENST00000301030	NM_001256183.1	1213	Tcc/Ccc																																																																														
NF1	0	MSKCC	GRCh37	17	29533268	29533268	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	93	341	0	ENST00000358273.4:c.1271A>T	p.Asp424Val	p.D424V	ENST00000358273	NM_001042492.2	424	gAt/gTt																																																																														
CDK12	0	MSKCC	GRCh37	17	37680930	37680930	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	126	364	0	ENST00000447079.4:c.3103delC	p.His1035ThrfsTer22	p.H1035Tfs*22	ENST00000447079	NM_015083.1	1033	ctC/ct																																																																														
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	157	754	7	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																														
EPCAM	0	MSKCC	GRCh37	2	47613709	47613709	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	99	435	0	ENST00000263735.4:c.904-2A>G		p.X302_splice	ENST00000263735	NM_002354.2	302																																																																															
BCL2L11	0	MSKCC	GRCh37	2	111881688	111881688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	175	757	0	ENST00000393256.3:c.366G>T	p.Gln122His	p.Q122H	ENST00000393256	NM_006538.4	122	caG/caT																																																																														
IDH1	0	MSKCC	GRCh37	2	209116173	209116173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	112	532	0	ENST00000345146.2:c.103G>A	p.Val35Met	p.V35M	ENST00000345146	NM_005896.2	35	Gtg/Atg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31390273	31390273	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	189	660	0	ENST00000328111.2:c.2228A>C	p.Asn743Thr	p.N743T	ENST00000328111	NM_006892.3	743	aAc/aCc																																																																														
TOP1	0	MSKCC	GRCh37	20	39657718	39657718	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	150	464	0	ENST00000361337.2:c.11A>T	p.Asp4Val	p.D4V	ENST00000361337	NM_003286.2	4	gAc/gTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40733354	40733354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	106	409	0	ENST00000373198.4:c.3452A>G	p.Gln1151Arg	p.Q1151R	ENST00000373198	NM_133170.3	1151	cAa/cGa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171739	36171739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	122	433	0	ENST00000300305.3:c.826T>C	p.Ser276Pro	p.S276P	ENST00000300305		276	Tcc/Ccc																																																																														
MLH1	0	MSKCC	GRCh37	3	37045957	37045957	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	106	573	0	ENST00000231790.2:c.372T>A	p.Cys124Ter	p.C124*	ENST00000231790	NM_000249.3	124	tgT/tgA																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41277966	41277966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	104	417	0	ENST00000349496.5:c.1930C>T	p.Leu644Phe	p.L644F	ENST00000349496	NM_001904.3	644	Ctt/Ttt																																																																														
GATA2	0	MSKCC	GRCh37	3	128205020	128205021	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	119	636	0	ENST00000341105.2:c.420_421del	p.Tyr141ProfsTer43	p.Y141Pfs*43	ENST00000341105	NM_032638.4	140	gtGTac/gtac																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967186	134967186	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200311306		P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	160	429	0	ENST00000398015.3:c.2525G>A	p.Arg842Gln	p.R842Q	ENST00000398015	NM_004441.4	842	cGg/cAg																																																																														
KDR	0	MSKCC	GRCh37	4	55981086	55981086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	114	683	0	ENST00000263923.4:c.613A>G	p.Asn205Asp	p.N205D	ENST00000263923	NM_002253.2	205	Aat/Gat																																																																														
EPHA5	0	MSKCC	GRCh37	4	66189932	66189932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	86	313	2	ENST00000273854.3:c.3014T>C	p.Leu1005Ser	p.L1005S	ENST00000273854	NM_004439.5	1005	tTg/tCg																																																																														
TERT	0	MSKCC	GRCh37	5	1260674	1260674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	248	686	0	ENST00000310581.5:c.2885G>A	p.Arg962His	p.R962H	ENST00000310581	NM_198253.2	962	cGc/cAc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160577	56160577	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	90	399	0	ENST00000399503.3:c.851T>A	p.Ile284Asn	p.I284N	ENST00000399503	NM_005921.1	284	aTc/aAc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149495351	149495351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	156	665	0	ENST00000261799.4:c.3296C>T	p.Ala1099Val	p.A1099V	ENST00000261799	NM_002609.3	1099	gCg/gTg																																																																														
TAP1	0	MSKCC	GRCh37	6	32818746	32818746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	174	699	1	ENST00000354258.4:c.1205C>A	p.Pro402His	p.P402H	ENST00000354258	NM_000593.5	402	cCc/cAc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38287325	38287325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	39	750	5	ENST00000425967.3:c.332G>A	p.Arg111His	p.R111H	ENST00000425967	NM_001174067.1	111	cGc/cAc																																																																														
MYC	0	MSKCC	GRCh37	8	128752916	128752916	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	209	427	0	ENST00000377970.2:c.1077C>G	p.Ser359Arg	p.S359R	ENST00000377970	NM_002467.4	359	agC/agG																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738639	145738639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	223	602	4	ENST00000428558.2:c.2425G>A	p.Gly809Arg	p.G809R	ENST00000428558	NM_004260.3	809	Ggg/Agg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8471063	8471063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	88	511	0	ENST00000356435.5:c.3436C>T	p.Pro1146Ser	p.P1146S	ENST00000356435		1146	Cct/Tct																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	151	639	3	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399278	139399278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	254	832	2	ENST00000277541.6:c.4865G>A	p.Arg1622His	p.R1622H	ENST00000277541	NM_017617.3	1622	cGc/cAc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222438	53222438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	240	434	0	ENST00000375401.3:c.4394G>A	p.Arg1465Gln	p.R1465Q	ENST00000375401	NM_004187.3	1465	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	49	818	0	ENST00000269305.4:c.657delC	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061198	38061199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0015572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	181	395	0	ENST00000250448.2:c.789_790dup	p.Lys264ArgfsTer58	p.K264Rfs*58	ENST00000250448	NM_004496.3	264	aag/aGAag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916926	178916937	+	inframe_deletion	In_Frame_Del	DEL	GTAGGCAACCGT	GTAGGCAACCGT	-			P-0015572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	179	514	0	ENST00000263967.3:c.314_325del	p.Val105_Arg108del	p.V105_R108del	ENST00000263967	NM_006218.2	105	GTAGGCAACCGT/-																																																																														
STK11	0	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	168	514	0	ENST00000326873.7:c.290+1G>T		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	221	433	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
RIT1	0	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1409	83	435	1	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729154	66729154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	142	450	0	ENST00000307102.5:c.362G>C	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	121	tGc/tCc																																																																														
MTOR	0	MSKCC	GRCh37	1	11294234	11294234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	103	509	0	ENST00000361445.4:c.2297G>T	p.Arg766Leu	p.R766L	ENST00000361445	NM_004958.3	766	cGa/cTa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11145614	11145614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	53	468	0	ENST00000344626.4:c.3976G>A	p.Glu1326Lys	p.E1326K	ENST00000344626	NM_003072.3	1326	Gag/Aag																																																																														
RRAS	0	MSKCC	GRCh37	19	50140154	50140154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	169	408	0	ENST00000246792.3:c.271G>A	p.Gly91Arg	p.G91R	ENST00000246792	NM_006270.3	91	Ggg/Agg																																																																														
GSK3B	0	MSKCC	GRCh37	3	119666168	119666168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	77	332	0	ENST00000316626.5:c.313G>T	p.Asp105Tyr	p.D105Y	ENST00000316626		105	Gat/Tat																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670672	134670672	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	108	399	0	ENST00000398015.3:c.583A>T	p.Lys195Ter	p.K195*	ENST00000398015	NM_004441.4	195	Aag/Tag																																																																														
TERT	0	MSKCC	GRCh37	5	1254616	1254616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	280	311	0	ENST00000310581.5:c.3162G>T	p.Met1054Ile	p.M1054I	ENST00000310581	NM_198253.2	1054	atG/atT																																																																														
INHBA	0	MSKCC	GRCh37	7	41729691	41729691	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	103	372	0	ENST00000242208.4:c.838G>T	p.Gly280Ter	p.G280*	ENST00000242208	NM_002192.2	280	Gga/Tga																																																																														
TET1	0	MSKCC	GRCh37	10	70404552	70404552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	217	449	0	ENST00000373644.4:c.2066C>G	p.Pro689Arg	p.P689R	ENST00000373644	NM_030625.2	689	cCa/cGa																																																																														
MLL2	0	MSKCC	GRCh37	12	49448414	49448414	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	223	541	0	ENST00000301067.7:c.297del	p.Ser102AlafsTer28	p.S102Afs*28	ENST00000301067	NM_003482.3	99	ccT/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0015582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	104	320	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0015582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	45	269	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55																																																																															
CDKN1B	0	MSKCC	GRCh37	12	12870993	12870994	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0015582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	73	349	0	ENST00000228872.4:c.221dup	p.Tyr74Ter	p.Y74*	ENST00000228872	NM_004064.3	74	tac/tAac																																																																														
TBX3	0	MSKCC	GRCh37	12	115110064	115110070	+	frameshift_variant	Frame_Shift_Del	DEL	TAGGGGT	TAGGGGT	-			P-0015582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	158	747	0	ENST00000257566.3:c.1808_1814del	p.Tyr603SerfsTer27	p.Y603Sfs*27	ENST00000257566	NM_016569.3	603	tACCCCTAc/tc																																																																														
TBX3	0	MSKCC	GRCh37	12	115120639	115120639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	179	743	0	ENST00000257566.3:c.367A>G	p.Met123Val	p.M123V	ENST00000257566	NM_016569.3	123	Atg/Gtg																																																																														
CDH1	0	MSKCC	GRCh37	16	68853179	68853187	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAGATATC	TCAGATATC	-			P-0015582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	97	378	0	ENST00000261769.5:c.1566-4_1570del		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	119	452	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
JAK3	3718	MSKCC	GRCh37	19	17945696	17945696	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3213409		P-0015583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1336	164	529	0	ENST00000458235.1:c.2164G>A	p.Val722Ile	p.V722I	ENST00000458235	NM_000215.3	722	Gtc/Atc																																																																														
NF1	0	MSKCC	GRCh37	17	29527461	29527461	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	55	292	0	ENST00000358273.4:c.910C>T	p.Arg304Ter	p.R304*	ENST00000358273	NM_001042492.2	304	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89685271	89685271	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0015583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	26	160	0	ENST00000371953.3:c.166T>G	p.Phe56Val	p.F56V	ENST00000371953	NM_000314.4	56	Ttt/Gtt																																																																														
ARID5B	0	MSKCC	GRCh37	10	63845609	63845612	+	frameshift_variant	Frame_Shift_Del	DEL	AAAA	AAAA	-			P-0015583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	77	279	0	ENST00000279873.7:c.1348_1351del	p.Lys450AlafsTer28	p.K450Afs*28	ENST00000279873	NM_032199.2	450	AAAAgc/gc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692826	89692826	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	34	163	2	ENST00000371953.3:c.313del	p.Cys105ValfsTer8	p.C105Vfs*8	ENST00000371953	NM_000314.4	104	Ttt/tt																																																																														
PTEN	0	MSKCC	GRCh37	10	89725050	89725073	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTACTTCACAAAAACAGTAGAG	CTGTACTTCACAAAAACAGTAGAG	TT			P-0015583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	15	171	2	ENST00000371953.3:c.1033_1056delinsTT	p.Tyr346SerfsTer13	p.Y346Sfs*13	ENST00000371953	NM_000314.4	345	CTGTACTTCACAAAAACAGTAGAG/TT																																																																														
NF1	0	MSKCC	GRCh37	17	29576115	29576116	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0015583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	70	441	0	ENST00000358273.4:c.4093_4094del	p.Cys1365ProfsTer14	p.C1365Pfs*14	ENST00000358273	NM_001042492.2	1363	aGT/a																																																																														
NSD1	0	MSKCC	GRCh37	5	176684087	176684087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	114	509	1	ENST00000439151.2:c.4901G>A	p.Arg1634Gln	p.R1634Q	ENST00000439151	NM_022455.4	1634	cGg/cAg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100213	157100253	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCTC	GGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCTC	-			P-0015583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	68	58	0	ENST00000346085.5:c.1160_1200del	p.Ala387GlyfsTer134	p.A387Gfs*134	ENST00000346085	NM_020732.3	384	GGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCTCg/g																																																																														
EZH2	0	MSKCC	GRCh37	7	148511155	148511155	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	134	348	0	ENST00000320356.2:c.1747C>T	p.Arg583Ter	p.R583*	ENST00000320356	NM_004456.4	583	Cga/Tga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	55	210	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0015585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	134	450	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	94	431	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
FH	0	MSKCC	GRCh37	1	241669381	241669381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	124	387	0	ENST00000366560.3:c.826G>T	p.Gly276Cys	p.G276C	ENST00000366560	NM_000143.3	276	Ggc/Tgc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	507	380	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0015586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	253	341	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0015587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	161	356	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
FOXA1	0	MSKCC	GRCh37	14	38061137	38061185	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	-			P-0015587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	107	181	0	ENST00000250448.2:c.804_852del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tgCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGC/tg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098954	178098954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	124	247	0	ENST00000397062.3:c.91G>C	p.Gly31Arg	p.G31R	ENST00000397062	NM_006164.4	31	Gga/Cga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157470015	157470015	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	151	320	0	ENST00000346085.5:c.2809A>G	p.Thr937Ala	p.T937A	ENST00000346085	NM_020732.3	937	Act/Gct																																																																														
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	722	693	1	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	313	361	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	156	365	0				ENST00000310581	NM_198253.2																																																																																
CBL	0	MSKCC	GRCh37	11	119145615	119145615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	145	294	0	ENST00000264033.4:c.821A>T	p.Tyr274Phe	p.Y274F	ENST00000264033	NM_005188.3	274	tAt/tTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9561040	9561040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	98	194	0	ENST00000353224.5:c.742G>A	p.Glu248Lys	p.E248K	ENST00000353224	NM_177990.2	248	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	147	537	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
MET	0	MSKCC	GRCh37	7	116411902	116411902	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	518	562	1	ENST00000397752.3:c.2888-1G>A		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
ANKRD11	0	MSKCC	GRCh37	16	89341313	89341313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	109	180	0	ENST00000301030.4:c.7622C>T	p.Ala2541Val	p.A2541V	ENST00000301030	NM_001256183.1	2541	gCg/gTg																																																																														
TOP1	0	MSKCC	GRCh37	20	39657720	39657720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	89	376	0	ENST00000361337.2:c.13C>G	p.His5Asp	p.H5D	ENST00000361337	NM_003286.2	5	Cac/Gac																																																																														
BCOR	0	MSKCC	GRCh37	X	39934004	39934004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	61	521	1	ENST00000378444.4:c.595G>A	p.Ala199Thr	p.A199T	ENST00000378444	NM_001123385.1	199	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	21	392	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	36	402	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	23	239	0	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																																																														
PDPK1	0	MSKCC	GRCh37	16	2636712	2636712	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	98	431	0	ENST00000342085.4:c.1161G>C	p.Gln387His	p.Q387H	ENST00000342085	NM_002613.4	387	caG/caC																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42845292	42845294	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0015597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	84	543	0	ENST00000398585.3:c.968_970del	p.Ile323del	p.I323del	ENST00000398585	NM_001135099.1	323	aTCAcc/acc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138374288	138374288	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	37	473	0	ENST00000289153.2:c.3156C>G	p.Ser1052Arg	p.S1052R	ENST00000289153	NM_006219.2	1052	agC/agG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	206	413	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0015600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	93	328	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
STK11	0	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	955	452	0	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																														
TP53	0	MSKCC	GRCh37	17	7573869	7574003	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTTTCCAACCTAGGAAGGCAGGGGAGTAGGGCCAGGAAGGGGCTGAGGTCACTCACCTGGAGTGAGCCCTGCTCCCCCCTGGCTCCTTCCCAGCCTGGGCATCCTTGAGTTCCAAGGCCTCATTCAGCTCTCG	GGCTTTCCAACCTAGGAAGGCAGGGGAGTAGGGCCAGGAAGGGGCTGAGGTCACTCACCTGGAGTGAGCCCTGCTCCCCCCTGGCTCCTTCCCAGCCTGGGCATCCTTGAGTTCCAAGGCCTCATTCAGCTCTCG	-			P-0015600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	400	173	0	ENST00000269305.4:c.1024_1100+58del		p.X342_splice	ENST00000269305	NM_001126112.2	342																																																																															
CHEK2	0	MSKCC	GRCh37	22	29095891	29095891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	238	535	0	ENST00000328354.6:c.943G>T	p.Gly315Trp	p.G315W	ENST00000328354	NM_007194.3	315	Ggg/Tgg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670325	134670325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	223	288	1	ENST00000398015.3:c.236G>A	p.Arg79Gln	p.R79Q	ENST00000398015	NM_004441.4	79	cGg/cAg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115729	8115730	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	149	293	0	ENST00000346208.3:c.1077dupA	p.Gly360ArgfsTer11	p.G360Rfs*11	ENST00000346208		359	gaa/gAaa																																																																														
CBFB	0	MSKCC	GRCh37	16	67100668	67100687	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCTGTCTGGAGTTTGATG	GGGCTGTCTGGAGTTTGATG	-			P-0015602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	230	397	0	ENST00000412916.2:c.366_385del	p.Met122IlefsTer16	p.M122Ifs*16	ENST00000412916		122	atGGGCTGTCTGGAGTTTGATGag/atag																																																																														
CTCF	0	MSKCC	GRCh37	16	67663437	67663438	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0015602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	192	187	0	ENST00000264010.4:c.1837+2dup		p.X613_splice	ENST00000264010	NM_006565.3	613																																																																															
SF3B1	0	MSKCC	GRCh37	2	198266508	198266508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	116	262	0	ENST00000335508.6:c.2328A>T	p.Glu776Asp	p.E776D	ENST00000335508	NM_012433.2	776	gaA/gaT																																																																														
STK11	0	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	414	812	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610293	10610293	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015604-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	405	834	1	ENST00000171111.5:c.417del	p.Phe139LeufsTer18	p.F139Lfs*18	ENST00000171111	NM_203500.1	139	ttC/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0015609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	390	664	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																														
CRKL	0	MSKCC	GRCh37	22	21272490	21272490	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	367	789	0	ENST00000354336.3:c.268A>G	p.Ile90Val	p.I90V	ENST00000354336	NM_005207.3	90	Atc/Gtc																																																																														
ATRX	0	MSKCC	GRCh37	X	76939172	76939172	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	213	615	0	ENST00000373344.5:c.1576G>T	p.Glu526Ter	p.E526*	ENST00000373344	NM_000489.3	526	Gaa/Taa																																																																														
KDM5A	0	MSKCC	GRCh37	12	432766	432766	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0015611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	106	413	0	ENST00000399788.2:c.2150G>T	p.Arg717Ile	p.R717I	ENST00000399788	NM_001042603.1	717	aGa/aTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577611	7577611	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0015611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	337	391	0	ENST00000269305.4:c.673-3T>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
TEK	0	MSKCC	GRCh37	9	27217750	27217750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	188	526	3	ENST00000380036.4:c.3056G>T	p.Ser1019Ile	p.S1019I	ENST00000380036	NM_000459.3	1019	aGt/aTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	404	408	0				ENST00000310581	NM_198253.2																																																																																
PBRM1	0	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	515	539	3	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32918761	32918762	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	252	294	1	ENST00000380152.3:c.6908_6909delCCinsTT	p.Ser2303Phe	p.S2303F	ENST00000380152		2303	tCC/tTT																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	601	635	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2492097	2492097	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	525	567	1	ENST00000355716.4:c.500delC	p.Pro167ArgfsTer23	p.P167Rfs*23	ENST00000355716	NM_003820.2	165	tgC/tg																																																																														
JAK1	0	MSKCC	GRCh37	1	65335127	65335127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	429	480	0	ENST00000342505.4:c.514C>T	p.Pro172Ser	p.P172S	ENST00000342505	NM_002227.2	172	Cct/Tct																																																																														
CSDE1	0	MSKCC	GRCh37	1	115276376	115276377	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	375	463	1	ENST00000438362.2:c.951_952delCCinsTT	p.Pro318Ser	p.P318S	ENST00000438362	NM_001242891.1	317	atCCca/atTTca																																																																														
ELF3	0	MSKCC	GRCh37	1	201982138	201982139	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	475	593	1	ENST00000359651.3:c.662_663delCCinsTT	p.Pro221Leu	p.P221L	ENST00000359651		221	cCC/cTT																																																																														
RRAS2	0	MSKCC	GRCh37	11	14303170	14303170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	453	409	1	ENST00000256196.4:c.505C>T	p.His169Tyr	p.H169Y	ENST00000256196		169	Cat/Tat																																																																														
AKT1	0	MSKCC	GRCh37	14	105242098	105242098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	490	484	1	ENST00000349310.3:c.326G>A	p.Gly109Asp	p.G109D	ENST00000349310	NM_001014432.1	109	gGc/gAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992668	72992669	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	347	378	0	ENST00000268489.5:c.1376_1377delCCinsTT	p.Ala459Val	p.A459V	ENST00000268489	NM_006885.3	459	gCC/gTT																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39593447	39593447	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	253	233	0	ENST00000262039.4:c.1212A>T	p.Lys404Asn	p.K404N	ENST00000262039	NM_002647.2	404	aaA/aaT																																																																														
BRD4	0	MSKCC	GRCh37	19	15365046	15365046	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200802400		P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	2125	526	1	ENST00000263377.2:c.2075C>T	p.Ser692Phe	p.S692F	ENST00000263377	NM_058243.2	692	tCc/tTc																																																																														
MLL4	0	MSKCC	GRCh37	19	36211138	36211138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	2062	780	0	ENST00000222270.7:c.889C>T	p.Arg297Ter	p.R297*	ENST00000222270	NM_014727.1	297	Cga/Tga																																																																														
CUL3	0	MSKCC	GRCh37	2	225343024	225343047	+	inframe_deletion	In_Frame_Del	DEL	CTTTCCTCTCTGGGTCGGATTCAC	CTTTCCTCTCTGGGTCGGATTCAC	-			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	260	572	2	ENST00000264414.4:c.2045_2068delGTGAATCCGACCCAGAGAGGAAAG	p.Gly682_Lys689del	p.G682_K689del	ENST00000264414	NM_003590.4	682	gGTGAATCCGACCCAGAGAGGAAAGaa/gaa																																																																														
AURKA	0	MSKCC	GRCh37	20	54961321	54961321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2230743		P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	453	475	0	ENST00000312783.6:c.311C>T	p.Ser104Leu	p.S104L	ENST00000312783	NM_198436.1	104	tCg/tTg																																																																														
ATR	0	MSKCC	GRCh37	3	142275237	142275237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	381	332	0	ENST00000350721.4:c.2066C>T	p.Pro689Leu	p.P689L	ENST00000350721	NM_001184.3	689	cCc/cTc																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41747967	41747967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	158	171	0	ENST00000226382.2:c.802G>A	p.Gly268Ser	p.G268S	ENST00000226382	NM_003924.3	268	Ggc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112178106	112178106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	330	286	0	ENST00000257430.4:c.6815G>A	p.Arg2272Lys	p.R2272K	ENST00000257430	NM_000038.5	2272	aGa/aAa																																																																														
ROS1	0	MSKCC	GRCh37	6	117681073	117681073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	507	550	0	ENST00000368508.3:c.3547G>A	p.Val1183Ile	p.V1183I	ENST00000368508	NM_002944.2	1183	Gtt/Att																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450394	50450394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	264	317	0	ENST00000331340.3:c.578G>A	p.Arg193Lys	p.R193K	ENST00000331340	NM_006060.4	193	aGg/aAg																																																																														
LYN	0	MSKCC	GRCh37	8	56922665	56922665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	463	467	0	ENST00000519728.1:c.1535C>A	p.Pro512His	p.P512H	ENST00000519728	NM_002350.3	512	cCt/cAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39933403	39933403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	436	486	0	ENST00000378444.4:c.1196G>A	p.Gly399Glu	p.G399E	ENST00000378444	NM_001123385.1	399	gGg/gAg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52637711	52637713	+	stop_gained	Nonsense_Mutation	ONP	GAA	GAA	AAT			P-0015612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	326	428	1	ENST00000394830.3:c.2603_2605delTTCinsATT	p.LeuGln868HisTer	p.LQ868H*	ENST00000394830	NM_018313.4	868	cTTCag/cATTag																																																																														
PPARG	0	MSKCC	GRCh37	3	12447429	12447429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	158	586	0	ENST00000287820.6:c.668C>T	p.Ala223Val	p.A223V	ENST00000287820	NM_015869.4	223	gCg/gTg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52713588	52713588	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0015614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	80	448	0	ENST00000394830.3:c.138+2T>C		p.X46_splice	ENST00000394830	NM_018313.4	46																																																																															
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	19	475	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
GNAS	0	MSKCC	GRCh37	20	57484597	57484597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	8	415	1	ENST00000371085.3:c.681G>T	p.Gln227His	p.Q227H	ENST00000371085	NM_000516.4	227	caG/caT																																																																														
MLL2	0	MSKCC	GRCh37	12	49434587	49434588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015615-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	53	592	0	ENST00000301067.7:c.6965dup	p.Thr2323AspfsTer3	p.T2323Dfs*3	ENST00000301067	NM_003482.3	2322	aag/aaAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	330	701	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948288	71948296	+	inframe_deletion	In_Frame_Del	DEL	GCCACCCTC	GCCACCCTC	-			P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1354	526	867	0	ENST00000298229.2:c.3003_3011del	p.Pro1002_Pro1004del	p.P1002_P1004del	ENST00000298229	NM_001567.3	1000	gaGCCACCCTCg/gag																																																																														
KDM5A	0	MSKCC	GRCh37	12	443503	443503	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	407	648	0	ENST00000399788.2:c.1394G>T	p.Gly465Val	p.G465V	ENST00000399788	NM_001042603.1	465	gGt/gTt																																																																														
TSC2	0	MSKCC	GRCh37	16	2132484	2132484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	548	691	2	ENST00000219476.3:c.3862C>T	p.His1288Tyr	p.H1288Y	ENST00000219476	NM_000548.3	1288	Cac/Tac																																																																														
FLCN	0	MSKCC	GRCh37	17	17120454	17120454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	445	701	0	ENST00000285071.4:c.1105C>T	p.Leu369Phe	p.L369F	ENST00000285071	NM_144997.5	369	Ctc/Ttc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566718	212566718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	122	297	0	ENST00000342788.4:c.1463G>A	p.Arg488Gln	p.R488Q	ENST00000342788	NM_005235.2	488	cGg/cAg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42848507	42848521	+	frameshift_variant	Frame_Shift_Del	DEL	TACAGCGTAAAGAAA	TACAGCGTAAAGAAA	AAAG			P-0015618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	258	617	3	ENST00000398585.3:c.821_835delinsCTTT	p.Val274AlafsTer63	p.V274Afs*63	ENST00000398585	NM_001135099.1	274	gTTTCTTTACGCTGTAta/gCTTTta																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0015625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	197	312	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	264	535	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	215	386	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
DICER1	0	MSKCC	GRCh37	14	95572555	95572555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	105	248	1	ENST00000343455.3:c.2810G>A	p.Arg937His	p.R937H	ENST00000343455	NM_177438.2	937	cGc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89690832	89690836	+	frameshift_variant	Frame_Shift_Del	DEL	AATTT	AATTT	-			P-0015625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	176	326	0	ENST00000371953.3:c.243_247del	p.Phe81LeufsTer9	p.F81Lfs*9	ENST00000371953	NM_000314.4	80	aAATTT/a																																																																														
MLL4	0	MSKCC	GRCh37	19	36221694	36221694	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	421	904	0	ENST00000222270.7:c.5363C>G	p.Pro1788Arg	p.P1788R	ENST00000222270	NM_014727.1	1788	cCg/cGg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591147	67591148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	337	342	0	ENST00000274335.5:c.1742dup	p.Leu581PhefsTer21	p.L581Ffs*21	ENST00000274335		580	-/T																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	21	718	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	25	564	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	114	872	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	13	342	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	216	622	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	243	583	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
ERCC2	0	MSKCC	GRCh37	19	45856015	45856015	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144511865		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	62	706	0	ENST00000391945.4:c.1891C>T	p.Arg631Cys	p.R631C	ENST00000391945	NM_000400.3	631	Cgc/Tgc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	321	414	1	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3777792	3777792	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200566758		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	418	1004	2	ENST00000262367.5:c.7256C>T	p.Ala2419Val	p.A2419V	ENST00000262367	NM_004380.2	2419	gCg/gTg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716212	52716212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	202	468	1	ENST00000322088.6:c.656C>T	p.Ser219Leu	p.S219L	ENST00000322088	NM_014225.5	219	tCg/tTg																																																																														
ATR	0	MSKCC	GRCh37	3	142188397	142188397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	31	396	0	ENST00000350721.4:c.6334C>T	p.Arg2112Cys	p.R2112C	ENST00000350721	NM_001184.3	2112	Cgt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	205	452	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	255	657	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222993	5222993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	208	837	1	ENST00000357368.4:c.2810C>T	p.Ala937Val	p.A937V	ENST00000357368	NM_002850.3	937	gCg/gTg																																																																														
FLT3	0	MSKCC	GRCh37	13	28589808	28589808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	219	591	0	ENST00000241453.7:c.2572G>A	p.Glu858Lys	p.E858K	ENST00000241453	NM_004119.2	858	Gaa/Aaa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	263	634	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	207	490	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																														
POLE	0	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	174	483	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	148	399	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
FLT1	0	MSKCC	GRCh37	13	28959144	28959144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	156	344	0	ENST00000282397.4:c.1994G>A	p.Arg665Gln	p.R665Q	ENST00000282397	NM_002019.4	665	cGa/cAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89685308	89685308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	110	263	0	ENST00000371953.3:c.203A>G	p.Tyr68Cys	p.Y68C	ENST00000371953	NM_000314.4	68	tAc/tGc																																																																														
MGA	0	MSKCC	GRCh37	15	42041074	42041074	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	300	699	0	ENST00000219905.7:c.5452C>T	p.Arg1818Ter	p.R1818*	ENST00000219905	NM_001164273.1	1818	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	307	284	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	202	404	0	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																														
STAT5A	0	MSKCC	GRCh37	17	40441970	40441970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	44	747	2	ENST00000345506.4:c.215C>T	p.Ala72Val	p.A72V	ENST00000345506	NM_003152.3	72	gCg/gTg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	246	399	0	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291828	15291828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	317	861	3	ENST00000263388.2:c.2938G>A	p.Ala980Thr	p.A980T	ENST00000263388	NM_000435.2	980	Gcc/Acc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468024	50468024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	28	449	0	ENST00000331340.3:c.1259C>T	p.Pro420Leu	p.P420L	ENST00000331340	NM_006060.4	420	cCg/cTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212543826	212543826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	59	555	0	ENST00000342788.4:c.1573C>T	p.Arg525Cys	p.R525C	ENST00000342788	NM_005235.2	525	Cgc/Tgc																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950648	38950648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776074870		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	12	370	0	ENST00000357387.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000357387	NM_152756.3	1101	tCg/tTg																																																																														
RASA1	0	MSKCC	GRCh37	5	86674233	86674233	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	176	418	0	ENST00000274376.6:c.2365C>T	p.Arg789Ter	p.R789*	ENST00000274376	NM_002890.2	789	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89692802	89692802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	46	411	0	ENST00000371953.3:c.286C>T	p.Pro96Ser	p.P96S	ENST00000371953	NM_000314.4	96	Cca/Tca																																																																														
NF1	0	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	283	601	2	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39570433	39570433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	82	135	0	ENST00000262039.4:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000262039	NM_002647.2	210	cGa/cAa																																																																														
SPEN	0	MSKCC	GRCh37	1	16254839	16254839	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	61	565	0	ENST00000375759.3:c.2104C>T	p.Arg702Ter	p.R702*	ENST00000375759	NM_015001.2	702	Cga/Tga																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7976165	7976165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	199	656	0	ENST00000319144.4:c.2030G>A	p.Arg677His	p.R677H	ENST00000319144	NM_001139.2	677	cGc/cAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187539690	187539690	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	163	381	0	ENST00000441802.2:c.8050G>T	p.Glu2684Ter	p.E2684*	ENST00000441802	NM_005245.3	2684	Gaa/Taa																																																																														
CSF1R	0	MSKCC	GRCh37	5	149456962	149456962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	37	498	1	ENST00000286301.3:c.766C>T	p.Arg256Cys	p.R256C	ENST00000286301	NM_005211.3	256	Cgt/Tgt																																																																														
TET2	0	MSKCC	GRCh37	4	106155749	106155749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	125	419	0	ENST00000380013.4:c.650C>T	p.Ser217Phe	p.S217F	ENST00000380013	NM_001127208.2	217	tCc/tTc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830931	72830931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	189	365	0	ENST00000268489.5:c.5650G>T	p.Glu1884Ter	p.E1884*	ENST00000268489	NM_006885.3	1884	Gaa/Taa																																																																														
ATR	0	MSKCC	GRCh37	3	142234346	142234346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	169	409	1	ENST00000350721.4:c.4394C>A	p.Ser1465Tyr	p.S1465Y	ENST00000350721	NM_001184.3	1465	tCt/tAt																																																																														
EZH2	0	MSKCC	GRCh37	7	148506185	148506185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	269	567	1	ENST00000320356.2:c.2173G>A	p.Glu725Lys	p.E725K	ENST00000320356	NM_004456.4	725	Gaa/Aaa																																																																														
RASA1	5921	MSKCC	GRCh37	5	86633825	86633825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	154	357	1	ENST00000274376.6:c.934G>T	p.Glu312Ter	p.E312*	ENST00000274376	NM_002890.2	312	Gaa/Taa																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159099	143159099	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1332432216		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	203	536	2	ENST00000262992.4:c.754C>T	p.Arg252Ter	p.R252*	ENST00000262992	NM_001101669.1	252	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112178781	112178781	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141010008		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	199	495	0	ENST00000257430.4:c.7490C>T	p.Ser2497Leu	p.S2497L	ENST00000257430	NM_000038.5	2497	tCg/tTg																																																																														
PPARG	0	MSKCC	GRCh37	3	12421355	12421355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	369	895	0	ENST00000287820.6:c.235G>A	p.Glu79Lys	p.E79K	ENST00000287820	NM_015869.4	79	Gaa/Aaa																																																																														
FLT3	0	MSKCC	GRCh37	13	28644733	28644733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	38	346	1	ENST00000241453.7:c.60G>A	p.Met20Ile	p.M20I	ENST00000241453	NM_004119.2	20	atG/atA																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9778917	9778917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	197	681	0	ENST00000377346.4:c.1186G>A	p.Ala396Thr	p.A396T	ENST00000377346	NM_005026.3	396	Gcc/Acc																																																																														
MTOR	0	MSKCC	GRCh37	1	11184568	11184568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	239	575	0	ENST00000361445.4:c.6649C>T	p.Arg2217Trp	p.R2217W	ENST00000361445	NM_004958.3	2217	Cgg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16258070	16258070	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140024761		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	47	457	0	ENST00000375759.3:c.5335G>A	p.Ala1779Thr	p.A1779T	ENST00000375759	NM_015001.2	1779	Gcc/Acc																																																																														
JAK1	0	MSKCC	GRCh37	1	65321242	65321242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	192	558	4	ENST00000342505.4:c.1598C>T	p.Thr533Met	p.T533M	ENST00000342505	NM_002227.2	533	aCg/aTg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120466386	120466386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	164	530	0	ENST00000256646.2:c.4733G>A	p.Arg1578His	p.R1578H	ENST00000256646	NM_024408.3	1578	cGc/cAc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120496169	120496169	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	235	523	0	ENST00000256646.2:c.2362A>G	p.Lys788Glu	p.K788E	ENST00000256646	NM_024408.3	788	Aaa/Gaa																																																																														
RIT1	0	MSKCC	GRCh37	1	155874167	155874167	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	60	684	3	ENST00000368323.3:c.364C>T	p.Arg122Ter	p.R122*	ENST00000368323	NM_006912.5	122	Cga/Tga																																																																														
PARP1	0	MSKCC	GRCh37	1	226574031	226574031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201975538		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	36	337	0	ENST00000366794.5:c.830C>T	p.Ser277Leu	p.S277L	ENST00000366794	NM_001618.3	277	tCg/tTg																																																																														
SMYD3	0	MSKCC	GRCh37	1	246078935	246078935	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	49	444	0	ENST00000388985.4:c.710T>A	p.Ile237Asn	p.I237N	ENST00000388985		237	aTc/aAc																																																																														
CBL	0	MSKCC	GRCh37	11	119149280	119149280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	179	630	2	ENST00000264033.4:c.1288G>A	p.Val430Met	p.V430M	ENST00000264033	NM_005188.3	430	Gtg/Atg																																																																														
KDM5A	0	MSKCC	GRCh37	12	419075	419075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	212	482	0	ENST00000399788.2:c.3272A>C	p.Lys1091Thr	p.K1091T	ENST00000399788	NM_001042603.1	1091	aAa/aCa																																																																														
KDM5A	0	MSKCC	GRCh37	12	422358	422358	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	32	389	1	ENST00000399788.2:c.2900C>T	p.Pro967Leu	p.P967L	ENST00000399788	NM_001042603.1	967	cCg/cTg																																																																														
KDM5A	0	MSKCC	GRCh37	12	443476	443476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	282	610	1	ENST00000399788.2:c.1421G>A	p.Gly474Glu	p.G474E	ENST00000399788	NM_001042603.1	474	gGa/gAa																																																																														
ARID2	0	MSKCC	GRCh37	12	46246557	46246557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	104	196	0	ENST00000334344.6:c.4651G>A	p.Ala1551Thr	p.A1551T	ENST00000334344	NM_152641.2	1551	Gca/Aca																																																																														
MLL2	0	MSKCC	GRCh37	12	49443497	49443497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	197	443	0	ENST00000301067.7:c.3874C>T	p.Arg1292Cys	p.R1292C	ENST00000301067	NM_003482.3	1292	Cgc/Tgc																																																																														
FLT3	0	MSKCC	GRCh37	13	28588695	28588695	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	124	350	1	ENST00000241453.7:c.2754-1G>T		p.X918_splice	ENST00000241453	NM_004119.2	918																																																																															
BRCA2	0	MSKCC	GRCh37	13	32914641	32914641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	215	539	0	ENST00000380152.3:c.6149T>C	p.Val2050Ala	p.V2050A	ENST00000380152		2050	gTa/gCa																																																																														
TSHR	0	MSKCC	GRCh37	14	81609979	81609979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	94	292	0	ENST00000298171.2:c.1577C>T	p.Ala526Val	p.A526V	ENST00000298171	NM_000369.2	526	gCc/gTc																																																																														
DICER1	0	MSKCC	GRCh37	14	95582846	95582846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	21	268	0	ENST00000343455.3:c.1696A>G	p.Thr566Ala	p.T566A	ENST00000343455	NM_177438.2	566	Aca/Gca																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643320	38643320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	116	445	0	ENST00000299084.4:c.790C>T	p.Pro264Ser	p.P264S	ENST00000299084	NM_152594.2	264	Cct/Tct																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643619	38643619	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs140225135		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	38	528	0	ENST00000299084.4:c.1089A>G	p.Ile363Met	p.I363M	ENST00000299084	NM_152594.2	363	atA/atG																																																																														
RAD51	0	MSKCC	GRCh37	15	41001250	41001250	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	288	556	0	ENST00000267868.3:c.371A>C	p.Glu124Ala	p.E124A	ENST00000267868	NM_002875.4	124	gAa/gCa																																																																														
MGA	0	MSKCC	GRCh37	15	41961459	41961459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	176	433	0	ENST00000219905.7:c.367C>A	p.Leu123Ile	p.L123I	ENST00000219905	NM_001164273.1	123	Ctt/Att																																																																														
MGA	0	MSKCC	GRCh37	15	42042593	42042593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	185	476	0	ENST00000219905.7:c.6788G>A	p.Ser2263Asn	p.S2263N	ENST00000219905	NM_001164273.1	2263	aGc/aAc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3801726	3801726	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	49	425	0	ENST00000262367.5:c.3779+1G>A		p.X1260_splice	ENST00000262367	NM_004380.2	1260																																																																															
PLCG2	0	MSKCC	GRCh37	16	81953115	81953115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	63	283	0	ENST00000359376.3:c.2081G>A	p.Arg694His	p.R694H	ENST00000359376	NM_002661.3	694	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	311	857	0	ENST00000269305.4:c.827C>T	p.Ala276Val	p.A276V	ENST00000269305	NM_001126112.2	276	gCc/gTc																																																																														
AURKB	0	MSKCC	GRCh37	17	8111118	8111118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	209	784	1	ENST00000585124.1:c.89G>A	p.Arg30Gln	p.R30Q	ENST00000585124	NM_004217.3	30	cGg/cAg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984693	11984693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	128	319	0	ENST00000353533.5:c.239G>A	p.Ser80Asn	p.S80N	ENST00000353533	NM_003010.3	80	aGc/aAc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15942779	15942779	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202234006		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	302	633	1	ENST00000268712.3:c.6923G>A	p.Arg2308Gln	p.R2308Q	ENST00000268712	NM_006311.3	2308	cGa/cAa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37873597	37873597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	88	734	1	ENST00000269571.5:c.1762G>A	p.Ala588Thr	p.A588T	ENST00000269571		588	Gcc/Acc																																																																														
SPOP	0	MSKCC	GRCh37	17	47684730	47684730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	183	535	2	ENST00000347630.2:c.719G>A	p.Arg240Gln	p.R240Q	ENST00000347630	NM_001007230.1	240	cGa/cAa																																																																														
MSI2	0	MSKCC	GRCh37	17	55335665	55335665	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	350	739	0	ENST00000284073.2:c.220A>C	p.Ser74Arg	p.S74R	ENST00000284073	NM_138962.2	74	Agt/Cgt																																																																														
RNF43	0	MSKCC	GRCh37	17	56492900	56492900	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	21	254	0	ENST00000407977.2:c.39G>A	p.Trp13Ter	p.W13*	ENST00000407977		13	tgG/tgA																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533850	63533850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	119	546	0	ENST00000307078.5:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000307078	NM_004655.3	435	cCg/cTg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78854267	78854267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	42	574	0	ENST00000306801.3:c.1562T>C	p.Val521Ala	p.V521A	ENST00000306801	NM_020761.2	521	gTc/gCc																																																																														
GNA11	0	MSKCC	GRCh37	19	3115015	3115015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	209	844	1	ENST00000078429.4:c.550G>A	p.Val184Met	p.V184M	ENST00000078429	NM_002067.2	184	Gtg/Atg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11134269	11134269	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	199	637	1	ENST00000344626.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000344626	NM_003072.3	979	Cga/Tga																																																																														
JAK3	0	MSKCC	GRCh37	19	17950322	17950322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	310	887	0	ENST00000458235.1:c.1405G>A	p.Val469Met	p.V469M	ENST00000458235	NM_000215.3	469	Gtg/Atg																																																																														
MLL4	0	MSKCC	GRCh37	19	36228011	36228011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	273	707	0	ENST00000222270.7:c.7397G>A	p.Gly2466Asp	p.G2466D	ENST00000222270	NM_014727.1	2466	gGc/gAc																																																																														
AKT2	0	MSKCC	GRCh37	19	40741000	40741000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	307	798	1	ENST00000392038.2:c.1318G>A	p.Asp440Asn	p.D440N	ENST00000392038	NM_001626.4	440	Gat/Aat																																																																														
MYCN	0	MSKCC	GRCh37	2	16082460	16082460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	341	843	1	ENST00000281043.3:c.274G>A	p.Ala92Thr	p.A92T	ENST00000281043	NM_005378.4	92	Gcc/Acc																																																																														
ALK	0	MSKCC	GRCh37	2	30143096	30143096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	184	836	0	ENST00000389048.3:c.430G>A	p.Glu144Lys	p.E144K	ENST00000389048	NM_004304.4	144	Gag/Aag																																																																														
MSH2	0	MSKCC	GRCh37	2	47710056	47710056	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	143	302	0	ENST00000233146.2:c.2773G>T	p.Glu925Ter	p.E925*	ENST00000233146	NM_000251.2	925	Gaa/Taa																																																																														
REL	0	MSKCC	GRCh37	2	61121667	61121667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	190	545	0	ENST00000295025.8:c.289C>T	p.Arg97Cys	p.R97C	ENST00000295025	NM_002908.2	97	Cgc/Tgc																																																																														
XPO1	0	MSKCC	GRCh37	2	61726907	61726907	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	215	508	0	ENST00000401558.2:c.531A>C	p.Glu177Asp	p.E177D	ENST00000401558	NM_003400.3	177	gaA/gaC																																																																														
ERCC3	0	MSKCC	GRCh37	2	128018835	128018835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	273	586	0	ENST00000285398.2:c.2033G>T	p.Arg678Ile	p.R678I	ENST00000285398	NM_000122.1	678	aGa/aTa																																																																														
ERCC3	0	MSKCC	GRCh37	2	128038147	128038147	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144012336		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	43	474	1	ENST00000285398.2:c.1403C>T	p.Ala468Val	p.A468V	ENST00000285398	NM_000122.1	468	gCg/gTg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096729	178096729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	24	240	0	ENST00000397062.3:c.602A>G	p.Asn201Ser	p.N201S	ENST00000397062	NM_006164.4	201	aAt/aGt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198257104	198257104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	245	540	0	ENST00000335508.6:c.3838C>G	p.Leu1280Val	p.L1280V	ENST00000335508	NM_012433.2	1280	Ctc/Gtc																																																																														
IRS1	0	MSKCC	GRCh37	2	227663333	227663333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	160	389	0	ENST00000305123.5:c.122C>T	p.Pro41Leu	p.P41L	ENST00000305123	NM_005544.2	41	cCg/cTg																																																																														
TOP1	0	MSKCC	GRCh37	20	39706263	39706263	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	129	239	0	ENST00000361337.2:c.321A>C	p.Glu107Asp	p.E107D	ENST00000361337	NM_003286.2	107	gaA/gaC																																																																														
TOP1	0	MSKCC	GRCh37	20	39728847	39728847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	173	435	0	ENST00000361337.2:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000361337	NM_003286.2	376	cGa/cAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40733274	40733274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	243	593	1	ENST00000373198.4:c.3532C>T	p.Leu1178Phe	p.L1178F	ENST00000373198	NM_133170.3	1178	Ctc/Ttc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306793	41306793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	101	269	0	ENST00000373198.4:c.866C>T	p.Pro289Leu	p.P289L	ENST00000373198	NM_133170.3	289	cCc/cTc																																																																														
EP300	0	MSKCC	GRCh37	22	41574025	41574025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	126	501	0	ENST00000263253.7:c.6310C>T	p.Pro2104Ser	p.P2104S	ENST00000263253	NM_001429.3	2104	Cct/Tct																																																																														
RAF1	0	MSKCC	GRCh37	3	12629121	12629121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	191	354	0	ENST00000251849.4:c.1386G>T	p.Lys462Asn	p.K462N	ENST00000251849	NM_002880.3	462	aaG/aaT																																																																														
ATR	0	MSKCC	GRCh37	3	142280137	142280137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	216	523	0	ENST00000350721.4:c.1297C>T	p.Arg433Cys	p.R433C	ENST00000350721	NM_001184.3	433	Cgt/Tgt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1918681	1918681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	262	533	0	ENST00000382891.5:c.844G>A	p.Val282Ile	p.V282I	ENST00000382891	NM_133335.3	282	Gta/Ata																																																																														
WHSC1	0	MSKCC	GRCh37	4	1952854	1952854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	292	713	0	ENST00000382891.5:c.1937A>G	p.Glu646Gly	p.E646G	ENST00000382891	NM_133335.3	646	gAa/gGa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66230755	66230755	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	100	386	0	ENST00000273854.3:c.2216T>G	p.Leu739Ter	p.L739*	ENST00000273854	NM_004439.5	739	tTa/tGa																																																																														
TET2	0	MSKCC	GRCh37	4	106190845	106190845	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	190	498	0	ENST00000380013.4:c.4123T>G	p.Leu1375Val	p.L1375V	ENST00000380013	NM_001127208.2	1375	Ttg/Gtg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143114277	143114277	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76891221		P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	125	436	0	ENST00000262992.4:c.1144C>T	p.Arg382Trp	p.R382W	ENST00000262992	NM_001101669.1	382	Cgg/Tgg																																																																														
FAT1	0	MSKCC	GRCh37	4	187519169	187519169	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	199	631	1	ENST00000441802.2:c.12214G>T	p.Gly4072Ter	p.G4072*	ENST00000441802	NM_005245.3	4072	Gga/Tga																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56183276	56183276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	242	474	0	ENST00000399503.3:c.4186G>A	p.Ala1396Thr	p.A1396T	ENST00000399503	NM_005921.1	1396	Gca/Aca																																																																														
RASA1	0	MSKCC	GRCh37	5	86679577	86679577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	222	462	0	ENST00000274376.6:c.2738G>A	p.Arg913Gln	p.R913Q	ENST00000274376	NM_002890.2	913	cGg/cAg																																																																														
NSD1	0	MSKCC	GRCh37	5	176636964	176636964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	46	660	0	ENST00000439151.2:c.1564A>G	p.Lys522Glu	p.K522E	ENST00000439151	NM_022455.4	522	Aaa/Gaa																																																																														
SESN1	0	MSKCC	GRCh37	6	109315802	109315802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	257	584	0	ENST00000436639.2:c.983C>A	p.Ser328Tyr	p.S328Y	ENST00000436639	NM_014454.2	328	tCt/tAt																																																																														
ROS1	0	MSKCC	GRCh37	6	117662700	117662700	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	188	395	0	ENST00000368508.3:c.4765G>T	p.Glu1589Ter	p.E1589*	ENST00000368508	NM_002944.2	1589	Gaa/Taa																																																																														
ROS1	0	MSKCC	GRCh37	6	117663630	117663630	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	220	440	0	ENST00000368508.3:c.4602T>A	p.Asn1534Lys	p.N1534K	ENST00000368508	NM_002944.2	1534	aaT/aaA																																																																														
ROS1	0	MSKCC	GRCh37	6	117684001	117684001	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	198	430	0	ENST00000368508.3:c.3146T>C	p.Ile1049Thr	p.I1049T	ENST00000368508	NM_002944.2	1049	aTa/aCa																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138201339	138201339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	209	481	1	ENST00000237289.4:c.2038G>A	p.Glu680Lys	p.E680K	ENST00000237289	NM_001270507.1	680	Gaa/Aaa																																																																														
CARD11	0	MSKCC	GRCh37	7	2979480	2979480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	297	644	0	ENST00000396946.4:c.767A>G	p.Asp256Gly	p.D256G	ENST00000396946	NM_032415.4	256	gAc/gGc																																																																														
CARD11	0	MSKCC	GRCh37	7	2984061	2984061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	151	414	1	ENST00000396946.4:c.469C>T	p.Arg157Trp	p.R157W	ENST00000396946	NM_032415.4	157	Cgg/Tgg																																																																														
HGF	0	MSKCC	GRCh37	7	81374362	81374362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	158	387	0	ENST00000222390.5:c.700C>T	p.Arg234Cys	p.R234C	ENST00000222390	NM_000601.4	234	Cgc/Tgc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509661	106509661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	230	612	0	ENST00000359195.3:c.1655G>A	p.Arg552His	p.R552H	ENST00000359195	NM_002649.2	552	cGc/cAc																																																																														
SMO	0	MSKCC	GRCh37	7	128852216	128852216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	71	863	0	ENST00000249373.3:c.2288G>A	p.Arg763Gln	p.R763Q	ENST00000249373	NM_005631.4	763	cGa/cAa																																																																														
MLL3	0	MSKCC	GRCh37	7	151878446	151878446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	59	639	1	ENST00000262189.6:c.6499C>T	p.Arg2167Trp	p.R2167W	ENST00000262189	NM_170606.2	2167	Cgg/Tgg																																																																														
LYN	0	MSKCC	GRCh37	8	56910960	56910960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	212	670	1	ENST00000519728.1:c.1106G>A	p.Arg369Gln	p.R369Q	ENST00000519728	NM_002350.3	369	cGa/cAa																																																																														
PREX2	0	MSKCC	GRCh37	8	69069580	69069580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	206	562	0	ENST00000288368.4:c.4255T>C	p.Tyr1419His	p.Y1419H	ENST00000288368	NM_024870.2	1419	Tat/Cat																																																																														
AGO2	0	MSKCC	GRCh37	8	141572568	141572568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	49	513	0	ENST00000220592.5:c.502C>T	p.His168Tyr	p.H168Y	ENST00000220592	NM_012154.3	168	Cac/Tac																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409497	80409497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	283	645	0	ENST00000286548.4:c.617T>C	p.Val206Ala	p.V206A	ENST00000286548	NM_002072.3	206	gTa/gCa																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128420050	128420050	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	222	689	0	ENST00000265960.3:c.378A>C	p.Lys126Asn	p.K126N	ENST00000265960	NM_001006617.1	126	aaA/aaC																																																																														
ABL1	0	MSKCC	GRCh37	9	133750269	133750269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	199	465	0	ENST00000318560.5:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000318560	NM_005157.4	367	cGa/cAa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44928873	44928873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	41	425	0	ENST00000377967.4:c.1973G>A	p.Arg658Gln	p.R658Q	ENST00000377967	NM_021140.2	658	cGa/cAa																																																																														
ARAF	0	MSKCC	GRCh37	X	47430353	47430353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	77	812	1	ENST00000377045.4:c.1628G>A	p.Arg543Gln	p.R543Q	ENST00000377045	NM_001654.4	543	cGg/cAg																																																																														
GATA1	0	MSKCC	GRCh37	X	48650810	48650810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	64	967	1	ENST00000376670.3:c.679G>A	p.Ala227Thr	p.A227T	ENST00000376670	NM_002049.3	227	Gcc/Acc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53245264	53245264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	255	625	1	ENST00000375401.3:c.773G>A	p.Arg258Gln	p.R258Q	ENST00000375401	NM_004187.3	258	cGg/cAg																																																																														
AR	0	MSKCC	GRCh37	X	66765929	66765929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	294	800	0	ENST00000374690.3:c.941G>T	p.Gly314Val	p.G314V	ENST00000374690	NM_000044.3	314	gGa/gTa																																																																														
MED12	0	MSKCC	GRCh37	X	70344062	70344062	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	239	871	0	ENST00000374080.3:c.1798T>C	p.Phe600Leu	p.F600L	ENST00000374080		600	Ttc/Ctc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099406	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAA	-	rs775084783		P-0015628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	68	385	0	ENST00000346085.5:c.363_383del	p.Gln125_Gln131del	p.Q125_Q131del	ENST00000346085	NM_020732.3	115	CAGCAGCAGCAGCAGCAGCAA/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	528	831	0	ENST00000269305.4:c.487T>A	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	163	Tac/Aac																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513182	106513182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	53	254	2	ENST00000359195.3:c.2089del	p.Trp697GlyfsTer3	p.W697Gfs*3	ENST00000359195	NM_002649.2	696	Ttt/tt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513200	106513200	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	61	282	0	ENST00000359195.3:c.2104G>C	p.Glu702Gln	p.E702Q	ENST00000359195	NM_002649.2	702	Gag/Cag																																																																														
ATRX	0	MSKCC	GRCh37	X	76918842	76918905	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTTACATTCAGAATTAAAACATCTTACCCTTTCTTCTGTTTCTGCCTTTGACTTCTTTATGC	TCTTTACATTCAGAATTAAAACATCTTACCCTTTCTTCTGTTTCTGCCTTTGACTTCTTTATGC	-			P-0015628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	109	161	0	ENST00000373344.5:c.4086_4120+29del		p.X1362_splice	ENST00000373344	NM_000489.3	1362																																																																															
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	739	847	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	210	590	0	ENST00000304494.5:c.204_205delinsTT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcTTag																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	210	590	0	ENST00000304494.5:c.204_205delinsTT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcTTag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971153	21971154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	210	590	0	ENST00000304494.5:c.204_205delinsTT	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	68	gcGGag/gcTTag																																																																														
SPEN	0	MSKCC	GRCh37	1	16257210	16257210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	165	589	0	ENST00000375759.3:c.4475C>G	p.Ser1492Cys	p.S1492C	ENST00000375759	NM_015001.2	1492	tCc/tGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057991	27057991	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	286	688	0	ENST00000324856.7:c.1699C>T	p.Gln567Ter	p.Q567*	ENST00000324856	NM_006015.4	567	Cag/Tag																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64127755	64127755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	395	673	0	ENST00000334205.4:c.248G>C	p.Arg83Pro	p.R83P	ENST00000334205	NM_003942.2	83	cGc/cCc																																																																														
MGA	0	MSKCC	GRCh37	15	42046729	42046729	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	290	724	0	ENST00000219905.7:c.7103A>G	p.Lys2368Arg	p.K2368R	ENST00000219905	NM_001164273.1	2368	aAg/aGg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812236	212812236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	130	432	0	ENST00000342788.4:c.340C>G	p.Arg114Gly	p.R114G	ENST00000342788	NM_005235.2	114	Cga/Gga																																																																														
MET	0	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	188	736	1	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
TP53	0	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1401	153	1019	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																														
MGA	0	MSKCC	GRCh37	15	42041591	42041591	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	86	626	0	ENST00000219905.7:c.5786A>T	p.Gln1929Leu	p.Q1929L	ENST00000219905	NM_001164273.1	1929	cAg/cTg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59761012	59761012	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	78	500	0	ENST00000259008.2:c.3395T>A	p.Phe1132Tyr	p.F1132Y	ENST00000259008	NM_032043.2	1132	tTt/tAt																																																																														
JAK3	0	MSKCC	GRCh37	19	17951153	17951153	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	98	632	0	ENST00000458235.1:c.1143-3C>A		p.X381_splice	ENST00000458235	NM_000215.3	381																																																																															
EPHA7	0	MSKCC	GRCh37	6	93982029	93982029	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	28	328	0	ENST00000369303.4:c.1436A>T	p.Lys479Met	p.K479M	ENST00000369303	NM_004440.3	479	aAg/aTg																																																																														
MET	0	MSKCC	GRCh37	7	116395570	116395570	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	44	377	0	ENST00000397752.3:c.1862+1G>A		p.X621_splice	ENST00000397752	NM_000245.2	621																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	56	430	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	62	382	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520274	176520274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	148	643	5	ENST00000292408.4:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000292408	NM_213647.1	398	cGg/cAg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63700142	63700142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	41	227	0	ENST00000279873.7:c.477C>A	p.Asp159Glu	p.D159E	ENST00000279873	NM_032199.2	159	gaC/gaA																																																																														
CBFB	0	MSKCC	GRCh37	16	67070577	67070577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	44	277	0	ENST00000412916.2:c.201G>T	p.Gln67His	p.Q67H	ENST00000412916		67	caG/caT																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56184102	56184102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	81	477	0	ENST00000399503.3:c.4307G>A	p.Gly1436Asp	p.G1436D	ENST00000399503	NM_005921.1	1436	gGc/gAc																																																																														
MLL3	0	MSKCC	GRCh37	7	151860719	151860719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	118	435	0	ENST00000262189.6:c.9943C>T	p.Gln3315Ter	p.Q3315*	ENST00000262189	NM_170606.2	3315	Cag/Tag																																																																														
MLL3	0	MSKCC	GRCh37	7	151878331	151878331	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	78	522	1	ENST00000262189.6:c.6614A>C	p.His2205Pro	p.H2205P	ENST00000262189	NM_170606.2	2205	cAt/cCt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	221	481	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281070	49281070	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	144	518	0	ENST00000282018.3:c.117A>T	p.Glu39Asp	p.E39D	ENST00000282018	NM_020377.2	39	gaA/gaT																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138570	11138598	+	frameshift_variant	Frame_Shift_Del	DEL	TGACCATCATGGAAGATTACTTTGCGTAT	TGACCATCATGGAAGATTACTTTGCGTAT	-			P-0015635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	109	596	0	ENST00000344626.4:c.3326_3354del	p.Met1109ThrfsTer4	p.M1109Tfs*4	ENST00000344626	NM_003072.3	1109	aTGACCATCATGGAAGATTACTTTGCGTAT/a																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	24	578	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46279760	46279760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	33	545	0	ENST00000371998.3:c.3686G>T	p.Arg1229Leu	p.R1229L	ENST00000371998		1229	cGc/cTc																																																																														
BAP1	0	MSKCC	GRCh37	3	52440925	52440925	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0015636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	39	564	0	ENST00000460680.1:c.581-2A>G		p.X194_splice	ENST00000460680	NM_004656.3	194																																																																															
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	294	531	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62292753	62292753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	252	529	0	ENST00000508582.2:c.205G>A	p.Ala69Thr	p.A69T	ENST00000508582		69	Gcc/Acc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	79	321	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	112	463	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																														
GATA3	0	MSKCC	GRCh37	10	8115947	8115948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0015640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	85	360	0	ENST00000346208.3:c.1294_1295dup	p.His434ThrfsTer42	p.H434Tfs*42	ENST00000346208		431	-/CC																																																																														
FLT1	0	MSKCC	GRCh37	13	28883002	28883002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	150	741	1	ENST00000282397.4:c.3698C>A	p.Pro1233Gln	p.P1233Q	ENST00000282397	NM_002019.4	1233	cCg/cAg																																																																														
PPARG	0	MSKCC	GRCh37	3	12447561	12447561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	233	704	0	ENST00000287820.6:c.800G>A	p.Gly267Glu	p.G267E	ENST00000287820	NM_015869.4	267	gGa/gAa																																																																														
KDR	0	MSKCC	GRCh37	4	55984812	55984812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	74	665	1	ENST00000263923.4:c.317G>A	p.Arg106Gln	p.R106Q	ENST00000263923	NM_002253.2	106	cGg/cAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76907782	76907796	+	inframe_deletion	In_Frame_Del	DEL	TCCTCCTCCTCCTCC	TCCTCCTCCTCCTCC	-			P-0015641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	49	206	0	ENST00000373344.5:c.4365_4379del	p.Glu1460_Glu1464del	p.E1460_E1464del	ENST00000373344	NM_000489.3	1455	gaGGAGGAGGAGGAGGAa/gaa																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	318	569	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	200	918	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057665	27057665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	127	839	0	ENST00000324856.7:c.1373G>T	p.Gly458Val	p.G458V	ENST00000324856	NM_006015.4	458	gGc/gTc																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871848	35871848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	118	584	0	ENST00000216797.5:c.658G>A	p.Ala220Thr	p.A220T	ENST00000216797	NM_020529.2	220	Gcc/Acc																																																																														
RNF43	0	MSKCC	GRCh37	17	56492867	56492870	+	frameshift_variant	Frame_Shift_Del	DEL	GCCT	GCCT	-			P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	97	432	0	ENST00000407977.2:c.69_72del	p.Gly24LeufsTer26	p.G24Lfs*26	ENST00000407977		23	gcAGGC/gc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575063	48575063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	134	401	0	ENST00000342988.3:c.257G>T	p.Gly86Val	p.G86V	ENST00000342988	NM_005359.5	86	gGt/gTt																																																																														
ROS1	0	MSKCC	GRCh37	6	117641068	117641068	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0015642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	179	636	0	ENST00000368508.3:c.5903T>G	p.Leu1968Ter	p.L1968*	ENST00000368508	NM_002944.2	1968	tTa/tGa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0015643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1281	88	665	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	102	173	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0015647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	581	367	12	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																														
EPHA3	0	MSKCC	GRCh37	3	89445025	89445025	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	454	486	7	ENST00000336596.2:c.1345T>A	p.Ser449Thr	p.S449T	ENST00000336596	NM_005233.5	449	Tcc/Acc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591865	48591865	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TTG			P-0015647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	177	329	0	ENST00000342988.3:c.1028delinsTTG	p.Ser343PhefsTer42	p.S343Ffs*42	ENST00000342988	NM_005359.5	343	tCa/tTTGa																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0015651-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			206	264	721	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
SH2B3	0	MSKCC	GRCh37	12	111856181	111856181	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015651-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			223	191	480	0	ENST00000341259.2:c.232G>T	p.Glu78Ter	p.E78*	ENST00000341259	NM_005475.2	78	Gag/Tag																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186505608	186505608	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015651-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			853	204	525	0	ENST00000323963.5:c.1016T>G	p.Val339Gly	p.V339G	ENST00000323963		339	gTg/gGg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178055	56178086	+	frameshift_variant	Frame_Shift_Del	DEL	ATTCCCTGCAGAATACCTTCTGCATCTCCTCA	ATTCCCTGCAGAATACCTTCTGCATCTCCTCA	-			P-0015651-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			391	46	591	0	ENST00000399503.3:c.3029_3060delTTCCCTGCAGAATACCTTCTGCATCTCCTCAA	p.Ile1010AsnfsTer15	p.I1010Nfs*15	ENST00000399503	NM_005921.1	1010	ATTCCCTGCAGAATACCTTCTGCATCTCCTCAa/a																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163608	32163608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015651-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			432	211	571	1	ENST00000375023.3:c.5618G>A	p.Gly1873Asp	p.G1873D	ENST00000375023	NM_004557.3	1873	gGc/gAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47045479	47045480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015651-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			633	113	778	0	ENST00000329236.7:c.2212_2213insT	p.Asp738ValfsTer5	p.D738Vfs*5	ENST00000329236	NM_001204466.1	738	gac/gTac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	222	710	2				ENST00000310581	NM_198253.2																																																																																
HRAS	0	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	293	702	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489534	56489534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	302	684	0	ENST00000267101.3:c.1999C>A	p.Arg667Ser	p.R667S	ENST00000267101	NM_001982.3	667	Cgt/Agt																																																																														
FANCC	0	MSKCC	GRCh37	9	97873816	97873817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	141	821	0	ENST00000289081.3:c.1257dup	p.Thr420HisfsTer15	p.T420Hfs*15	ENST00000289081	NM_000136.2	419	-/C																																																																														
STAG2	0	MSKCC	GRCh37	X	123224574	123224581	+	frameshift_variant	Frame_Shift_Del	DEL	CCAATGCA	CCAATGCA	-			P-0015661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	151	397	0	ENST00000218089.9:c.3427_3434del	p.Pro1143AspfsTer2	p.P1143Dfs*2	ENST00000218089	NM_001042749.1	1143	CCAATGCAg/g																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	26	620	1				ENST00000310581	NM_198253.2																																																																																
ELF3	0	MSKCC	GRCh37	1	201982392	201982393	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	220	1024	0	ENST00000359651.3:c.772dup	p.Trp258LeufsTer43	p.W258Lfs*43	ENST00000359651		257	-/T																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182681689	182681689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	121	441	0	ENST00000292782.4:c.369G>T	p.Met123Ile	p.M123I	ENST00000292782	NM_020640.2	123	atG/atT																																																																														
KDR	0	MSKCC	GRCh37	4	55968615	55968615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	76	816	0	ENST00000263923.4:c.2048G>A	p.Ser683Asn	p.S683N	ENST00000263923	NM_002253.2	683	aGc/aAc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527950	157527950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	139	733	0	ENST00000346085.5:c.5675C>A	p.Ala1892Glu	p.A1892E	ENST00000346085	NM_020732.3	1892	gCa/gAa																																																																														
TSC1	0	MSKCC	GRCh37	9	135797280	135797289	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGGTACAT	AAGGGTACAT	-			P-0015663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	52	406	0	ENST00000298552.3:c.580_589del	p.Met194AlafsTer13	p.M194Afs*13	ENST00000298552	NM_001162426.1	194	ATGTACCCTTgc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	295	437	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	388	508	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc																																																																														
KDR	0	MSKCC	GRCh37	4	55979471	55979471	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	111	315	0	ENST00000263923.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000263923	NM_002253.2	326	Gaa/Taa																																																																														
MLL2	0	MSKCC	GRCh37	12	49432153	49432153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	233	586	0	ENST00000301067.7:c.8986G>T	p.Asp2996Tyr	p.D2996Y	ENST00000301067	NM_003482.3	2996	Gat/Tat																																																																														
RAB35	0	MSKCC	GRCh37	12	120535162	120535162	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	109	355	0	ENST00000229340.5:c.493A>T	p.Thr165Ser	p.T165S	ENST00000229340	NM_006861.6	165	Acg/Tcg																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805940	46805940	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	190	258	0	ENST00000290295.7:c.16T>A	p.Tyr6Asn	p.Y6N	ENST00000290295	NM_006361.5	6	Tat/Aat																																																																														
STK11	0	MSKCC	GRCh37	19	1207014	1207023	+	frameshift_variant	Frame_Shift_Del	DEL	CATCTACCAG	CATCTACCAG	-			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	300	567	0	ENST00000326873.7:c.103_112del	p.Ile35ArgfsTer13	p.I35Rfs*13	ENST00000326873	NM_000455.4	34	gtCATCTACCAG/gt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40733234	40733234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	171	522	0	ENST00000373198.4:c.3572C>G	p.Ser1191Cys	p.S1191C	ENST00000373198	NM_133170.3	1191	tCc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	75	629	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092802	27092802	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	104	864	0	ENST00000324856.7:c.2823del	p.Asn942ThrfsTer26	p.N942Tfs*26	ENST00000324856	NM_006015.4	941	atC/at																																																																														
TP53	0	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	73	898	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																														
PRKD1	0	MSKCC	GRCh37	14	30099996	30099996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	65	582	0	ENST00000331968.5:c.1624C>G	p.Pro542Ala	p.P542A	ENST00000331968	NM_002742.2	542	Ccc/Gcc																																																																														
NTHL1	0	MSKCC	GRCh37	16	2094699	2094699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	99	845	0	ENST00000219066.1:c.481G>A	p.Val161Met	p.V161M	ENST00000219066	NM_002528.5	161	Gtg/Atg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2225438	2225457	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACCTTGGAAAATGGTGAGT	AACCTTGGAAAATGGTGAGT	-			P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	34	657	0	ENST00000398665.3:c.3651_3661+9del		p.X1217_splice	ENST00000398665	NM_032482.2	1217																																																																															
TERT	0	MSKCC	GRCh37	5	1293694	1293695	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0015668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	57	906	4	ENST00000310581.5:c.1306_1307delinsTT	p.Ala436Leu	p.A436L	ENST00000310581	NM_198253.2	436	GCg/TTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	78	438	0				ENST00000310581	NM_198253.2																																																																																
ZRSR2	0	MSKCC	GRCh37	X	15841000	15841000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	152	527	1	ENST00000307771.7:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000307771	NM_005089.3	362	Gaa/Aaa																																																																														
RB1	0	MSKCC	GRCh37	13	48941626	48941675	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAAGGTTGAAAATCTTTCTAAACGATACGAAGAAATTTATCTTAAAAATA	CAAGGTTGAAAATCTTTCTAAACGATACGAAGAAATTTATCTTAAAAATA	-			P-0015671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	29	193	0	ENST00000267163.4:c.940-4_985del		p.X314_splice	ENST00000267163	NM_000321.2	314																																																																															
RBM10	0	MSKCC	GRCh37	X	47032582	47032582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	158	455	0	ENST00000329236.7:c.257G>A	p.Arg86Gln	p.R86Q	ENST00000329236	NM_001204466.1	86	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	193	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	215	329	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																														
CCND2	0	MSKCC	GRCh37	12	4383319	4383319	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	107	381	0	ENST00000261254.3:c.113T>G	p.Leu38Arg	p.L38R	ENST00000261254	NM_001759.3	38	cTt/cGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972533	32972533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	203	325	0	ENST00000380152.3:c.9883C>T	p.Gln3295Ter	p.Q3295*	ENST00000380152		3295	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	127	304	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579307	7579320	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGACCGTGCAAGT	CTGACCGTGCAAGT	-			P-0015675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	120	209	0	ENST00000269305.4:c.367_375+5del		p.X123_splice	ENST00000269305	NM_001126112.2	123																																																																															
UPF1	0	MSKCC	GRCh37	19	18965963	18965963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	145	391	0	ENST00000262803.5:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000262803	NM_002911.3	486	Cca/Tca																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185155322	185155322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	176	241	0	ENST00000265026.3:c.563G>A	p.Arg188Gln	p.R188Q	ENST00000265026	NM_004721.4	188	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	70	340	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0015676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	399	211	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
RB1	0	MSKCC	GRCh37	13	48916746	48916746	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	132	183	0	ENST00000267163.4:c.276T>G	p.Ile92Met	p.I92M	ENST00000267163	NM_000321.2	92	atT/atG																																																																														
MLL4	0	MSKCC	GRCh37	19	36208925	36208926	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCGGCGGCG			P-0015676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	12	28	0	ENST00000222270.7:c.15_24dup	p.Ser9GlyfsTer110	p.S9Gfs*110	ENST00000222270	NM_014727.1	2	gcg/gcGGCGGCGGCGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	67	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986975	36986975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	73	395	0	ENST00000354822.5:c.714G>T	p.Trp238Cys	p.W238C	ENST00000354822	NM_001079668.2	238	tgG/tgT																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	186	203	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																														
ROS1	0	MSKCC	GRCh37	6	117662691	117662691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	326	268	0	ENST00000368508.3:c.4774C>T	p.Arg1592Cys	p.R1592C	ENST00000368508	NM_002944.2	1592	Cgt/Tgt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0015679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	973	329	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
DICER1	0	MSKCC	GRCh37	14	95562798	95562799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	268	253	1	ENST00000343455.3:c.4458dup	p.Ser1487IlefsTer5	p.S1487Ifs*5	ENST00000343455	NM_177438.2	1486	-/A																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168513	56168513	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	199	166	0	ENST00000399503.3:c.1469T>A	p.Leu490His	p.L490H	ENST00000399503	NM_005921.1	490	cTt/cAt																																																																														
PREX2	0	MSKCC	GRCh37	8	68956729	68956729	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	436	379	0	ENST00000288368.4:c.847A>G	p.Lys283Glu	p.K283E	ENST00000288368	NM_024870.2	283	Aag/Gag																																																																														
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	414	586	1	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20156713	20156713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	331	190	0	ENST00000379607.5:c.44G>A	p.Gly15Asp	p.G15D	ENST00000379607	NM_001412.3	15	gGt/gAt																																																																														
FLT1	0	MSKCC	GRCh37	13	29001407	29001407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	114	221	0	ENST00000282397.4:c.1325C>T	p.Ala442Val	p.A442V	ENST00000282397	NM_002019.4	442	gCt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	28	446	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	31	703	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	157	513	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259199	36259199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	139	705	0	ENST00000300305.3:c.292delC	p.Leu98SerfsTer24	p.L98Sfs*24	ENST00000300305		98	Ctc/tc																																																																														
CDH1	0	MSKCC	GRCh37	16	68855944	68855944	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	108	552	0	ENST00000261769.5:c.1753del	p.Leu585CysfsTer4	p.L585Cfs*4	ENST00000261769	NM_004360.3	584	atC/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	686	485	0				ENST00000310581	NM_198253.2																																																																																
SUFU	0	MSKCC	GRCh37	10	104263932	104263948	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCCCCGGCCCCACC	GCGCCCCCGGCCCCACC	-			P-0015687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	205	152	0	ENST00000369902.3:c.37_53del	p.Thr13TrpfsTer29	p.T13Wfs*29	ENST00000369902	NM_016169.3	8	gGCGCCCCCGGCCCCACC/g																																																																														
PTPRS	0	MSKCC	GRCh37	19	5274346	5274346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	297	472	0	ENST00000357368.4:c.101G>A	p.Arg34Lys	p.R34K	ENST00000357368	NM_002850.3	34	aGg/aAg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877423	40877423	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	374	546	0	ENST00000373198.4:c.2273A>C	p.Lys758Thr	p.K758T	ENST00000373198	NM_133170.3	758	aAg/aCg																																																																														
RB1	0	MSKCC	GRCh37	13	48941664	48941687	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTTAAAAATAAAGATCTAGATG	ATCTTAAAAATAAAGATCTAGATG	C			P-0015687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	180	253	0	ENST00000267163.4:c.974_997delinsC	p.Tyr325SerfsTer8	p.Y325Sfs*8	ENST00000267163	NM_000321.2	325	tATCTTAAAAATAAAGATCTAGATGca/tCca																																																																														
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	221	771	2	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097801	27097801	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	100	365	0	ENST00000324856.7:c.3391del	p.Gln1131SerfsTer30	p.Q1131Sfs*30	ENST00000324856	NM_006015.4	1130	atC/at																																																																														
TET1	0	MSKCC	GRCh37	10	70450808	70450808	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	195	394	0	ENST00000373644.4:c.5648T>G	p.Met1883Arg	p.M1883R	ENST00000373644	NM_030625.2	1883	aTg/aGg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59924533	59924533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1282	77	454	0	ENST00000259008.2:c.556A>G	p.Lys186Glu	p.K186E	ENST00000259008	NM_032043.2	186	Aaa/Gaa																																																																														
ARAF	0	MSKCC	GRCh37	X	47430352	47430352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	389	795	3	ENST00000377045.4:c.1627C>T	p.Arg543Trp	p.R543W	ENST00000377045	NM_001654.4	543	Cgg/Tgg																																																																														
IRS2	0	MSKCC	GRCh37	13	110437363	110437373	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGTCGGTGC	GCTGTCGGTGC	A			P-0015689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	59	201	0	ENST00000375856.3:c.1028_1038delinsT	p.Arg343LeufsTer45	p.R343Lfs*45	ENST00000375856	NM_003749.2	343	cGCACCGACAGC/cT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	104	456	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	25	312	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	78	437	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	216	638	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	91	467	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
CIC	0	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	196	664	2	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	43	447	1	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																																																														
TERT	0	MSKCC	GRCh37	5	1294088	1294088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1373	301	865	1	ENST00000310581.5:c.913G>A	p.Ala305Thr	p.A305T	ENST00000310581	NM_198253.2	305	Gcg/Acg																																																																														
MYC	0	MSKCC	GRCh37	8	128752729	128752731	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	36	207	0	ENST00000377970.2:c.892_894delTCT	p.Ser298del	p.S298del	ENST00000377970	NM_002467.4	297	cCTTct/cct																																																																														
CHEK2	0	MSKCC	GRCh37	22	29090060	29090060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	27	208	0	ENST00000328354.6:c.1421G>A	p.Arg474His	p.R474H	ENST00000328354	NM_007194.3	474	cGt/cAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100944	27100944	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	76	501	0	ENST00000324856.7:c.4226A>G	p.Gln1409Arg	p.Q1409R	ENST00000324856	NM_006015.4	1409	cAg/cGg																																																																														
AKT3	0	MSKCC	GRCh37	1	243736254	243736254	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	45	418	0	ENST00000263826.5:c.793G>T	p.Gly265Ter	p.G265*	ENST00000263826	NM_005465.4	265	Gga/Tga																																																																														
TSC2	0	MSKCC	GRCh37	16	2138473	2138473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	108	720	1	ENST00000219476.3:c.5286C>A	p.Asn1762Lys	p.N1762K	ENST00000219476	NM_000548.3	1762	aaC/aaA																																																																														
SOX9	0	MSKCC	GRCh37	17	70119966	70120018	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	-			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	42	275	0	ENST00000245479.2:c.970_1022del	p.Thr324AlafsTer236	p.T324Afs*236	ENST00000245479	NM_000346.3	323	aGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG/a																																																																														
BRD4	0	MSKCC	GRCh37	19	15378230	15378230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	103	412	0	ENST00000263377.2:c.556A>G	p.Thr186Ala	p.T186A	ENST00000263377	NM_058243.2	186	Aca/Gca																																																																														
MLL4	0	MSKCC	GRCh37	19	36215965	36215966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	219	698	1	ENST00000222270.7:c.3506dup	p.His1169GlnfsTer8	p.H1169Qfs*8	ENST00000222270	NM_014727.1	1169	cac/cAac																																																																														
MET	0	MSKCC	GRCh37	7	116339242	116339242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	25	356	0	ENST00000397752.3:c.104T>C	p.Met35Thr	p.M35T	ENST00000397752	NM_000245.2	35	aTg/aCg																																																																														
RBM10	0	MSKCC	GRCh37	X	47030433	47030433	+	intron_variant	Intron	SNP	T	T	C			P-0015691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	198	603	0	ENST00000329236.7:c.201+1536T>C		p.*67*	ENST00000329236	NM_001204466.1																																																																																
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	904	920	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
HRAS	0	MSKCC	GRCh37	11	532668	532668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	526	987	0	ENST00000311189.7:c.538G>C	p.Gly180Arg	p.G180R	ENST00000311189		180	Ggc/Cgc																																																																														
RB1	0	MSKCC	GRCh37	13	48951052	48951052	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	88	223	1	ENST00000267163.4:c.1216-2A>T		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																															
ZFHX3	0	MSKCC	GRCh37	16	72984370	72984370	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	260	396	0	ENST00000268489.5:c.3214A>T	p.Lys1072Ter	p.K1072*	ENST00000268489	NM_006885.3	1072	Aag/Tag																																																																														
INSR	0	MSKCC	GRCh37	19	7117163	7117163	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	164	711	0	ENST00000302850.5:c.4053C>G	p.Phe1351Leu	p.F1351L	ENST00000302850	NM_000208.2	1351	ttC/ttG																																																																														
INPP4A	0	MSKCC	GRCh37	2	99160381	99160381	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	159	567	0	ENST00000074304.5:c.860G>C	p.Trp287Ser	p.W287S	ENST00000074304	NM_001134224.1	287	tGg/tCg																																																																														
ATR	0	MSKCC	GRCh37	3	142268371	142268371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	161	428	0	ENST00000350721.4:c.3121G>T	p.Val1041Phe	p.V1041F	ENST00000350721	NM_001184.3	1041	Gtc/Ttc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652068	36652068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	457	922	1	ENST00000244741.5:c.190G>T	p.Ala64Ser	p.A64S	ENST00000244741	NM_000389.4	64	Gcc/Tcc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395228	139395228	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	537	885	0	ENST00000277541.6:c.5710del	p.Glu1904ArgfsTer77	p.E1904Rfs*77	ENST00000277541	NM_017617.3	1904	Gag/ag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	93	497	1				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7579386	7579386	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	198	724	0	ENST00000269305.4:c.301A>T	p.Lys101Ter	p.K101*	ENST00000269305	NM_001126112.2	101	Aaa/Taa																																																																														
NF2	0	MSKCC	GRCh37	22	30067836	30067836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	99	320	0	ENST00000338641.4:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000338641	NM_000268.3	341	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	235	427	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	203	745	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
NRAS	0	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	115	578	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
CSDE1	0	MSKCC	GRCh37	1	115280616	115280616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	115	581	0	ENST00000438362.2:c.415G>A	p.Glu139Lys	p.E139K	ENST00000438362	NM_001242891.1	139	Gaa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	46	274	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																														
ARID2	0	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	26	340	0	ENST00000334344.6:c.940C>G	p.Arg314Gly	p.R314G	ENST00000334344	NM_152641.2	314	Cgt/Ggt																																																																														
MSI1	0	MSKCC	GRCh37	12	120795636	120795636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	55	446	0	ENST00000257552.2:c.517G>A	p.Glu173Lys	p.E173K	ENST00000257552	NM_002442.3	173	Gaa/Aaa																																																																														
NF1	0	MSKCC	GRCh37	17	29685527	29685527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	42	397	0	ENST00000358273.4:c.8000C>T	p.Thr2667Ile	p.T2667I	ENST00000358273	NM_001042492.2	2667	aCc/aTc																																																																														
CDK12	0	MSKCC	GRCh37	17	37618899	37618899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	68	658	0	ENST00000447079.4:c.575C>T	p.Ser192Phe	p.S192F	ENST00000447079	NM_015083.1	192	tCt/tTt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533519	63533538	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGGGCAGAAGCAGTGCA	CCCAGGGCAGAAGCAGTGCA	-			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	49	523	0	ENST00000307078.5:c.1616_1635del	p.Val539GlyfsTer82	p.V539Gfs*82	ENST00000307078	NM_004655.3	539	gTGCACTGCTTCTGCCCTGGG/g																																																																														
INSR	0	MSKCC	GRCh37	19	7152765	7152765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1360	92	733	0	ENST00000302850.5:c.2203T>C	p.Tyr735His	p.Y735H	ENST00000302850	NM_000208.2	735	Tac/Cac																																																																														
INSR	0	MSKCC	GRCh37	19	7184490	7184490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	65	598	0	ENST00000302850.5:c.811C>T	p.Pro271Ser	p.P271S	ENST00000302850	NM_000208.2	271	Ccg/Tcg																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	26	231	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
PAK7	0	MSKCC	GRCh37	20	9560934	9560934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	30	322	0	ENST00000353224.5:c.848G>A	p.Arg283Gln	p.R283Q	ENST00000353224	NM_177990.2	283	cGg/cAg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31483732	31483732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	34	292	1	ENST00000344624.3:c.2000C>T	p.Pro667Leu	p.P667L	ENST00000344624		667	cCt/cTt																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982137	93982137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	29	298	0	ENST00000369303.4:c.1328C>T	p.Pro443Leu	p.P443L	ENST00000369303	NM_004440.3	443	cCc/cTc																																																																														
ROS1	0	MSKCC	GRCh37	6	117641087	117641087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	50	509	0	ENST00000368508.3:c.5884G>A	p.Gly1962Arg	p.G1962R	ENST00000368508	NM_002944.2	1962	Gga/Aga																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367234	50367234	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	27	329	0	ENST00000331340.3:c.41G>A	p.Gly14Glu	p.G14E	ENST00000331340	NM_006060.4	14	gGg/gAg																																																																														
EZH2	0	MSKCC	GRCh37	7	148506444	148506444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	30	371	1	ENST00000320356.2:c.2068C>T	p.Arg690Cys	p.R690C	ENST00000320356	NM_004456.4	690	Cgt/Tgt																																																																														
MLL3	0	MSKCC	GRCh37	7	151879370	151879370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	52	412	0	ENST00000262189.6:c.5575C>T	p.Pro1859Ser	p.P1859S	ENST00000262189	NM_170606.2	1859	Cca/Tca																																																																														
PREX2	0	MSKCC	GRCh37	8	68930094	68930094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	48	431	0	ENST00000288368.4:c.155G>A	p.Arg52Lys	p.R52K	ENST00000288368	NM_024870.2	52	aGa/aAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528767	8528767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	80	305	1	ENST00000356435.5:c.365C>T	p.Pro122Leu	p.P122L	ENST00000356435		122	cCc/cTc																																																																														
ATRX	0	MSKCC	GRCh37	X	76938127	76938127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	62	544	2	ENST00000373344.5:c.2621G>A	p.Gly874Glu	p.G874E	ENST00000373344	NM_000489.3	874	gGa/gAa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	42	385	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	462	711	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TET2	0	MSKCC	GRCh37	4	106164772	106164772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	54	354	0	ENST00000380013.4:c.3640C>T	p.Arg1214Trp	p.R1214W	ENST00000380013	NM_001127208.2	1214	Cgg/Tgg																																																																														
IGF2	0	MSKCC	GRCh37	11	2154293	2154293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61732764		P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	305	1038	0	ENST00000434045.2:c.635G>A	p.Arg212His	p.R212H	ENST00000434045	NM_001127598.1	212	cGt/cAt																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664989	138664989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	181	473	0	ENST00000330315.3:c.576del	p.Lys193SerfsTer78	p.K193Sfs*78	ENST00000330315	NM_023067.3	192	ccC/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	250	721	0	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	343	851	3	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56183339	56183339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	36	457	0	ENST00000399503.3:c.4249G>A	p.Ala1417Thr	p.A1417T	ENST00000399503	NM_005921.1	1417	Gca/Aca																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509081	106509081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187257485		P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	93	613	0	ENST00000359195.3:c.1075C>T	p.Arg359Cys	p.R359C	ENST00000359195	NM_002649.2	359	Cgc/Tgc																																																																														
MSH6	0	MSKCC	GRCh37	2	48030591	48030591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	26	472	0	ENST00000234420.5:c.3209del	p.Gly1070ValfsTer9	p.G1070Vfs*9	ENST00000234420	NM_000179.2	1069	Ggg/gg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	125	543	5	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
MSH6	0	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	66	416	1	ENST00000234420.5:c.3312delT	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781302	3781302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	376	1062	1	ENST00000262367.5:c.5063C>T	p.Thr1688Met	p.T1688M	ENST00000262367	NM_004380.2	1688	aCg/aTg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	486	1110	3	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																														
FAT1	0	MSKCC	GRCh37	4	187558039	187558039	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	14	294	0	ENST00000441802.2:c.3672delC	p.Lys1225AsnfsTer9	p.K1225Nfs*9	ENST00000441802	NM_005245.3	1224	ccC/cc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31394066	31394066	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	79	606	0	ENST00000328111.2:c.2357del	p.Asn786ThrfsTer8	p.N786Tfs*8	ENST00000328111	NM_006892.3	785	Aaa/aa																																																																														
SOX9	0	MSKCC	GRCh37	17	70119765	70119766	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	251	854	1	ENST00000245479.2:c.770_771dupGC	p.Pro258AlafsTer22	p.P258Afs*22	ENST00000245479	NM_000346.3	256	ggg/ggGCg																																																																														
GSK3B	0	MSKCC	GRCh37	3	119631575	119631575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	39	594	1	ENST00000316626.5:c.691G>A	p.Ala231Thr	p.A231T	ENST00000316626		231	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	352	1248	2	ENST00000269305.4:c.389T>C	p.Leu130Pro	p.L130P	ENST00000269305	NM_001126112.2	130	cTc/cCc																																																																														
MDC1	0	MSKCC	GRCh37	6	30681463	30681463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	79	596	0	ENST00000376406.3:c.549del	p.Lys183AsnfsTer9	p.K183Nfs*9	ENST00000376406	NM_014641.2	183	aaA/aa																																																																														
IGF1	0	MSKCC	GRCh37	12	102811605	102811605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	128	633	3	ENST00000307046.8:c.579delA	p.Gly194GlufsTer8	p.G194Efs*8	ENST00000307046	NM_001111285.1	193	aaA/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	161	507	8	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																														
CIC	0	MSKCC	GRCh37	19	42796328	42796328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	340	1015	0	ENST00000575354.2:c.2977C>T	p.Pro993Ser	p.P993S	ENST00000575354	NM_015125.3	993	Cct/Tct																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	117	885	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	101	904	1	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64136210	64136210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	94	948	0	ENST00000334205.4:c.1369C>A	p.Leu457Met	p.L457M	ENST00000334205	NM_003942.2	457	Ctg/Atg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71939828	71939828	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	102	910	1	ENST00000298229.2:c.459del	p.Thr154LeufsTer25	p.T154Lfs*25	ENST00000298229	NM_001567.3	152	gCc/gc																																																																														
KDM5A	0	MSKCC	GRCh37	12	431700	431700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	63	738	0	ENST00000399788.2:c.2309C>A	p.Ala770Asp	p.A770D	ENST00000399788	NM_001042603.1	770	gCt/gAt																																																																														
ETV6	0	MSKCC	GRCh37	12	12038929	12038929	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	117	558	0	ENST00000396373.4:c.1222A>T	p.Arg408Trp	p.R408W	ENST00000396373	NM_001987.4	408	Agg/Tgg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18800847	18800847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	21	502	0	ENST00000266497.5:c.4223T>C	p.Val1408Ala	p.V1408A	ENST00000266497		1408	gTc/gCc																																																																														
ARID2	0	MSKCC	GRCh37	12	46123895	46123895	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	78	428	1	ENST00000334344.6:c.161T>A	p.Val54Asp	p.V54D	ENST00000334344	NM_152641.2	54	gTc/gAc																																																																														
MLL2	0	MSKCC	GRCh37	12	49425349	49425349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	51	828	0	ENST00000301067.7:c.13139del	p.Pro4380GlnfsTer4	p.P4380Qfs*4	ENST00000301067	NM_003482.3	4380	cCa/ca																																																																														
HNF1A	0	MSKCC	GRCh37	12	121437076	121437076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	245	706	0	ENST00000257555.6:c.1507T>C	p.Tyr503His	p.Y503H	ENST00000257555		503	Tac/Cac																																																																														
POLE	0	MSKCC	GRCh37	12	133226103	133226103	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	188	654	0	ENST00000320574.5:c.3796-2A>G		p.X1266_splice	ENST00000320574	NM_006231.2	1266																																																																															
POLE	0	MSKCC	GRCh37	12	133242038	133242038	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	219	735	0	ENST00000320574.5:c.2320-2A>G		p.X774_splice	ENST00000320574	NM_006231.2	774																																																																															
SLX4	0	MSKCC	GRCh37	16	3640041	3640041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	119	951	0	ENST00000294008.3:c.3598G>T	p.Asp1200Tyr	p.D1200Y	ENST00000294008	NM_032444.2	1200	Gat/Tat																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778468	3778468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	191	1033	1	ENST00000262367.5:c.6580C>T	p.Arg2194Trp	p.R2194W	ENST00000262367	NM_004380.2	2194	Cgg/Tgg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778884	3778884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	144	561	0	ENST00000262367.5:c.6164G>A	p.Ser2055Asn	p.S2055N	ENST00000262367	NM_004380.2	2055	aGc/aAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829718	72829718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	45	848	0	ENST00000268489.5:c.6863T>C	p.Val2288Ala	p.V2288A	ENST00000268489	NM_006885.3	2288	gTg/gCg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81962231	81962231	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	97	532	0	ENST00000359376.3:c.2581+2T>C		p.X861_splice	ENST00000359376	NM_002661.3	861																																																																															
NF1	0	MSKCC	GRCh37	17	29563007	29563007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	63	559	2	ENST00000358273.4:c.3942G>T	p.Trp1314Cys	p.W1314C	ENST00000358273	NM_001042492.2	1314	tgG/tgT																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245333	41245333	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	79	783	0	ENST00000357654.3:c.2215A>T	p.Lys739Ter	p.K739*	ENST00000357654	NM_007294.3	739	Aaa/Taa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603028	48603028	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	95	321	0	ENST00000342988.3:c.1329T>G	p.Cys443Trp	p.C443W	ENST00000342988	NM_005359.5	443	tgT/tgG																																																																														
GNA11	0	MSKCC	GRCh37	19	3120996	3120996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	64	598	0	ENST00000078429.4:c.899G>A	p.Arg300Gln	p.R300Q	ENST00000078429	NM_002067.2	300	cGg/cAg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138569	11138569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	166	851	0	ENST00000344626.4:c.3325A>G	p.Met1109Val	p.M1109V	ENST00000344626	NM_003072.3	1109	Atg/Gtg																																																																														
UPF1	0	MSKCC	GRCh37	19	18961642	18961642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	177	537	1	ENST00000262803.5:c.775G>A	p.Ala259Thr	p.A259T	ENST00000262803	NM_002911.3	259	Gca/Aca																																																																														
POLD1	0	MSKCC	GRCh37	19	50912142	50912142	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	322	975	0	ENST00000440232.2:c.1876A>G	p.Thr626Ala	p.T626A	ENST00000440232	NM_002691.3	626	Act/Gct																																																																														
EPCAM	0	MSKCC	GRCh37	2	47600610	47600611	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	72	459	0	ENST00000263735.4:c.87_88delTG	p.Cys29Ter	p.C29*	ENST00000263735	NM_002354.2	29	TGt/t																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023424	31023424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	111	504	0	ENST00000375687.4:c.2909G>A	p.Ser970Asn	p.S970N	ENST00000375687	NM_015338.5	970	aGc/aAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727179	40727179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	387	603	0	ENST00000373198.4:c.3785C>T	p.Pro1262Leu	p.P1262L	ENST00000373198	NM_133170.3	1262	cCt/cTt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306617	41306617	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	208	779	0	ENST00000373198.4:c.1042T>C	p.Trp348Arg	p.W348R	ENST00000373198	NM_133170.3	348	Tgg/Cgg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62321432	62321432	+	splice_region_variant,intron_variant	Splice_Region	DEL	C	C	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	234	648	4	ENST00000508582.2:c.2214-3delC		p.X738_splice	ENST00000508582		738																																																																															
RTEL1	0	MSKCC	GRCh37	20	62326475	62326475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	769	1099	1	ENST00000508582.2:c.3472G>A	p.Asp1158Asn	p.D1158N	ENST00000508582		1158	Gac/Aac																																																																														
CHEK2	0	MSKCC	GRCh37	22	29130707	29130707	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	112	390	1	ENST00000328354.6:c.3G>A	p.Met1?	p.M1?	ENST00000328354	NM_007194.3	1	atG/atA																																																																														
MYD88	0	MSKCC	GRCh37	3	38180367	38180367	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	235	881	0	ENST00000396334.3:c.215T>C	p.Leu72Ser	p.L72S	ENST00000396334	NM_002468.4	72	tTg/tCg																																																																														
SETD2	0	MSKCC	GRCh37	3	47162765	47162765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	39	420	0	ENST00000409792.3:c.3361G>A	p.Ala1121Thr	p.A1121T	ENST00000409792	NM_014159.6	1121	Gca/Aca																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026840	71026840	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	23	322	0	ENST00000318789.4:c.1382A>G	p.Asn461Ser	p.N461S	ENST00000318789	NM_032682.5	461	aAc/aGc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851675	134851675	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	143	481	0	ENST00000398015.3:c.1085del	p.Lys362SerfsTer25	p.K362Sfs*25	ENST00000398015	NM_004441.4	361	Aaa/aa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807204	1807204	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	144	838	0	ENST00000260795.2:c.1534+1G>A		p.X512_splice	ENST00000260795		512																																																																															
KIT	0	MSKCC	GRCh37	4	55599315	55599315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	88	620	0	ENST00000288135.5:c.2441C>A	p.Ala814Asp	p.A814D	ENST00000288135	NM_000222.2	814	gCc/gAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187524392	187524392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	177	494	0	ENST00000441802.2:c.11288G>A	p.Ser3763Asn	p.S3763N	ENST00000441802	NM_005245.3	3763	aGc/aAc																																																																														
APC	0	MSKCC	GRCh37	5	112177650	112177650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	16	350	0	ENST00000257430.4:c.6359C>T	p.Ala2120Val	p.A2120V	ENST00000257430	NM_000038.5	2120	gCt/gTt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149439387	149439387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	203	781	1	ENST00000286301.3:c.2008G>T	p.Asp670Tyr	p.D670Y	ENST00000286301	NM_005211.3	670	Gac/Tac																																																																														
CSF1R	0	MSKCC	GRCh37	5	149452928	149452928	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	54	734	3	ENST00000286301.3:c.1018G>T	p.Gly340Ter	p.G340*	ENST00000286301	NM_005211.3	340	Gga/Tga																																																																														
FLT4	0	MSKCC	GRCh37	5	180038457	180038457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	127	868	0	ENST00000261937.6:c.3560C>G	p.Ala1187Gly	p.A1187G	ENST00000261937	NM_182925.4	1187	gCc/gGc																																																																														
LATS1	0	MSKCC	GRCh37	6	150004423	150004423	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	23	542	0	ENST00000253339.5:c.1802A>G	p.Asp601Gly	p.D601G	ENST00000253339		601	gAt/gGt																																																																														
EGFR	0	MSKCC	GRCh37	7	55268932	55268932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	141	931	1	ENST00000275493.2:c.2998G>A	p.Ala1000Thr	p.A1000T	ENST00000275493	NM_005228.3	1000	Gcc/Acc																																																																														
MLL3	0	MSKCC	GRCh37	7	151893021	151893021	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	10	427	0	ENST00000262189.6:c.4349A>G	p.Asp1450Gly	p.D1450G	ENST00000262189	NM_170606.2	1450	gAt/gGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	196	651	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	78	345	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
DNMT1	0	MSKCC	GRCh37	19	10248552	10248552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	186	774	2	ENST00000340748.4:c.4201C>T	p.Arg1401Trp	p.R1401W	ENST00000340748		1401	Cgg/Tgg																																																																														
DDR2	0	MSKCC	GRCh37	1	162731065	162731065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	142	508	0	ENST00000367921.3:c.920G>A	p.Arg307His	p.R307H	ENST00000367921	NM_006182.2	307	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	186	435	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	276	656	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7579317	7579317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	101	531	0	ENST00000269305.4:c.370delT	p.Cys124AlafsTer46	p.C124Afs*46	ENST00000269305	NM_001126112.2	124	Tgc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	133	420	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0015703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	143	325	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	52	280	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
INSR	0	MSKCC	GRCh37	19	7120689	7120689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	55	698	1	ENST00000302850.5:c.3601C>T	p.Arg1201Trp	p.R1201W	ENST00000302850	NM_000208.2	1201	Cgg/Tgg																																																																														
KDR	0	MSKCC	GRCh37	4	55972088	55972088	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	74	328	0	ENST00000263923.4:c.1556T>A	p.Ile519Asn	p.I519N	ENST00000263923	NM_002253.2	519	aTc/aAc																																																																														
FLT4	0	MSKCC	GRCh37	5	180047894	180047894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	91	711	3	ENST00000261937.6:c.2281G>A	p.Ala761Thr	p.A761T	ENST00000261937	NM_182925.4	761	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	117	611	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
B2M	0	MSKCC	GRCh37	15	45003779	45003779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	185	455	0	ENST00000558401.1:c.35T>C	p.Leu12Pro	p.L12P	ENST00000558401	NM_004048.2	12	cTa/cCa																																																																														
RET	0	MSKCC	GRCh37	10	43615595	43615595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	93	540	0	ENST00000355710.3:c.2674G>C	p.Asp892His	p.D892H	ENST00000355710	NM_020975.4	892	Gat/Cat																																																																														
MRE11A	0	MSKCC	GRCh37	11	94219226	94219226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	82	540	0	ENST00000323929.3:c.178G>T	p.Asp60Tyr	p.D60Y	ENST00000323929	NM_005591.3	60	Gat/Tat																																																																														
MLL2	0	MSKCC	GRCh37	12	49431762	49431762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	100	599	1	ENST00000301067.7:c.9377G>T	p.Gly3126Val	p.G3126V	ENST00000301067	NM_003482.3	3126	gGa/gTa																																																																														
TBX3	0	MSKCC	GRCh37	12	115109788	115109788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	98	947	0	ENST00000257566.3:c.2090C>A	p.Ser697Tyr	p.S697Y	ENST00000257566	NM_016569.3	697	tCc/tAc																																																																														
RAB35	0	MSKCC	GRCh37	12	120541714	120541714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	93	585	0	ENST00000229340.5:c.143G>A	p.Arg48Gln	p.R48Q	ENST00000229340	NM_006861.6	48	cGg/cAg																																																																														
RB1	0	MSKCC	GRCh37	13	48923119	48923119	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	49	309	0	ENST00000267163.4:c.568del	p.Val190CysfsTer2	p.V190Cfs*2	ENST00000267163	NM_000321.2	189	ttG/tt																																																																														
RB1	0	MSKCC	GRCh37	13	48954187	48954187	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	50	294	0	ENST00000267163.4:c.1390-2A>G		p.X464_splice	ENST00000267163	NM_000321.2	464																																																																															
BLM	0	MSKCC	GRCh37	15	91312768	91312768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	217	481	0	ENST00000355112.3:c.2507G>A	p.Arg836Lys	p.R836K	ENST00000355112	NM_000057.2	836	aGg/aAg																																																																														
RARA	0	MSKCC	GRCh37	17	38512331	38512331	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	127	831	3	ENST00000254066.5:c.1243del	p.Glu415ArgfsTer9	p.E415Rfs*9	ENST00000254066	NM_000964.3	414	ttG/tt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78831699	78831699	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	65	669	0	ENST00000306801.3:c.1508G>T	p.Ser503Ile	p.S503I	ENST00000306801	NM_020761.2	503	aGc/aTc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39613789	39613789	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	59	341	1	ENST00000262039.4:c.1708-1G>T		p.X570_splice	ENST00000262039	NM_002647.2	570																																																																															
NOTCH3	0	MSKCC	GRCh37	19	15276719	15276719	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	100	721	0	ENST00000263388.2:c.5546A>G	p.Tyr1849Cys	p.Y1849C	ENST00000263388	NM_000435.2	1849	tAt/tGt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18266730	18266730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	205	791	0	ENST00000222254.8:c.41C>T	p.Pro14Leu	p.P14L	ENST00000222254	NM_005027.3	14	cCg/cTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730772	40730772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	99	480	3	ENST00000373198.4:c.3763C>A	p.Leu1255Met	p.L1255M	ENST00000373198	NM_133170.3	1255	Ctg/Atg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264635	46264635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	56	183	0	ENST00000371998.3:c.1505G>T	p.Gly502Val	p.G502V	ENST00000371998		502	gGt/gTt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143045777	143045777	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs142403292		P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	115	506	0	ENST00000262992.4:c.1857G>T	p.Met619Ile	p.M619I	ENST00000262992	NM_001101669.1	619	atG/atT																																																																														
FAT1	0	MSKCC	GRCh37	4	187532650	187532650	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	105	511	0	ENST00000441802.2:c.9743A>T	p.Glu3248Val	p.E3248V	ENST00000441802	NM_005245.3	3248	gAa/gTa																																																																														
PNRC1	0	MSKCC	GRCh37	6	89793524	89793524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	65	392	0	ENST00000336032.3:c.593A>G	p.Gln198Arg	p.Q198R	ENST00000336032	NM_006813.2	198	cAg/cGg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513231	106513232	+	missense_variant	Missense_Mutation	DNP	GG	GG	TC			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	42	295	0	ENST00000359195.3:c.2135_2136delinsTC	p.Arg712Ile	p.R712I	ENST00000359195	NM_002649.2	712	aGG/aTC																																																																														
SMO	0	MSKCC	GRCh37	7	128845224	128845224	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	70	397	2	ENST00000249373.3:c.718G>T	p.Val240Phe	p.V240F	ENST00000249373	NM_005631.4	240	Gtc/Ttc																																																																														
MLL3	0	MSKCC	GRCh37	7	151945044	151945044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	26	898	1	ENST00000262189.6:c.2475G>T	p.Met825Ile	p.M825I	ENST00000262189	NM_170606.2	825	atG/atT																																																																														
CD274	0	MSKCC	GRCh37	9	5457268	5457268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	81	336	0	ENST00000381577.3:c.242A>G	p.Tyr81Cys	p.Y81C	ENST00000381577	NM_014143.3	81	tAc/tGc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8404560	8404560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	57	304	0	ENST00000356435.5:c.4187G>C	p.Arg1396Pro	p.R1396P	ENST00000356435		1396	cGg/cCg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8436603	8436603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	67	529	0	ENST00000356435.5:c.4075C>A	p.Gln1359Lys	p.Q1359K	ENST00000356435		1359	Cag/Aag																																																																														
ARAF	0	MSKCC	GRCh37	X	47426708	47426708	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	110	707	0	ENST00000377045.4:c.953C>G	p.Thr318Arg	p.T318R	ENST00000377045	NM_001654.4	318	aCg/aGg																																																																														
AR	0	MSKCC	GRCh37	X	66766168	66766168	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	57	454	0	ENST00000374690.3:c.1180G>T	p.Asp394Tyr	p.D394Y	ENST00000374690	NM_000044.3	394	Gac/Tac																																																																														
AR	0	MSKCC	GRCh37	X	66766174	66766175	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	54	438	1	ENST00000374690.3:c.1186_1187delinsTT	p.Gly396Phe	p.G396F	ENST00000374690	NM_000044.3	396	GGc/TTc																																																																														
MED12	0	MSKCC	GRCh37	X	70340963	70340963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	76	674	0	ENST00000374080.3:c.696G>T	p.Gln232His	p.Q232H	ENST00000374080		232	caG/caT																																																																														
MED12	0	MSKCC	GRCh37	X	70348506	70348506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	75	524	3	ENST00000374080.3:c.3413G>T	p.Arg1138Leu	p.R1138L	ENST00000374080		1138	cGg/cTg																																																																														
BTK	0	MSKCC	GRCh37	X	100613403	100613403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	75	542	1	ENST00000308731.7:c.997C>T	p.His333Tyr	p.H333Y	ENST00000308731	NM_000061.2	333	Cat/Tat																																																																														
STAG2	0	MSKCC	GRCh37	X	123205146	123205146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	23	444	0	ENST00000218089.9:c.2506G>C	p.Glu836Gln	p.E836Q	ENST00000218089	NM_001042749.1	836	Gaa/Caa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	69	388	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
STK11	0	MSKCC	GRCh37	19	1221301	1221301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	88	735	0	ENST00000326873.7:c.824C>T	p.Pro275Leu	p.P275L	ENST00000326873	NM_000455.4	275	cCg/cTg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209351	98209351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	30	582	2	ENST00000331920.6:c.4187G>T	p.Gly1396Val	p.G1396V	ENST00000331920	NM_000264.3	1396	gGa/gTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	31	874	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1316	66	924	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	328	499	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0015709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	81	474	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
ESR1	0	MSKCC	GRCh37	6	152420037	152420037	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	246	428	0	ENST00000206249.3:c.1724C>G	p.Ser575Ter	p.S575*	ENST00000206249	NM_000125.3	575	tCa/tGa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	1162	820	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																														
TP53	0	MSKCC	GRCh37	17	7577563	7577565	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0015711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	494	622	1	ENST00000269305.4:c.716_718del	p.Asn239del	p.N239del	ENST00000269305	NM_001126112.2	239	aACAgt/agt																																																																														
RARA	0	MSKCC	GRCh37	17	38504619	38504619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	294	673	4	ENST00000254066.5:c.230C>T	p.Ser77Leu	p.S77L	ENST00000254066	NM_000964.3	77	tCg/tTg																																																																														
NSD1	0	MSKCC	GRCh37	5	176687122	176687122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	228	575	1	ENST00000439151.2:c.5099G>T	p.Arg1700Leu	p.R1700L	ENST00000439151	NM_022455.4	1700	cGa/cTa																																																																														
TEK	0	MSKCC	GRCh37	9	27212851	27212851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	615	756	0	ENST00000380036.4:c.2833G>A	p.Ala945Thr	p.A945T	ENST00000380036	NM_000459.3	945	Gct/Act																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	381	550	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0015714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	131	532	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
CDC73	0	MSKCC	GRCh37	1	193121548	193121548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	88	336	1	ENST00000367435.3:c.946C>T	p.His316Tyr	p.H316Y	ENST00000367435	NM_024529.4	316	Cat/Tat																																																																														
INSR	0	MSKCC	GRCh37	19	7267435	7267435	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	73	381	1	ENST00000302850.5:c.573G>T	p.Lys191Asn	p.K191N	ENST00000302850	NM_000208.2	191	aaG/aaT																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	11	693	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	36	181	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56486842	56486842	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	18	402	0	ENST00000267101.3:c.1256G>C	p.Gly419Ala	p.G419A	ENST00000267101	NM_001982.3	419	gGa/gCa																																																																														
JAK3	0	MSKCC	GRCh37	19	17955217	17955217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	29	890	0	ENST00000458235.1:c.10C>T	p.Pro4Ser	p.P4S	ENST00000458235	NM_000215.3	4	Cca/Tca																																																																														
NCOA3	0	MSKCC	GRCh37	20	46256389	46256389	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	21	605	0	ENST00000371998.3:c.617A>G	p.Asp206Gly	p.D206G	ENST00000371998		206	gAt/gGt																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651931	36651932	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0015716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	21	464	0	ENST00000244741.5:c.54_55dup	p.Arg19ProfsTer13	p.R19Pfs*13	ENST00000244741	NM_000389.4	18	tgc/tgCCc																																																																														
XIAP	0	MSKCC	GRCh37	X	123020215	123020215	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	23	353	0	ENST00000355640.3:c.703C>G	p.Leu235Val	p.L235V	ENST00000355640		235	Ctt/Gtt																																																																														
JAK1	0	MSKCC	GRCh37	1	65344760	65344760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	188	539	0	ENST00000342505.4:c.277C>T	p.Arg93Cys	p.R93C	ENST00000342505	NM_002227.2	93	Cgc/Tgc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	247	864	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PTEN	0	MSKCC	GRCh37	10	89711875	89711875	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	203	593	1	ENST00000371953.3:c.493G>T	p.Gly165Ter	p.G165*	ENST00000371953	NM_000314.4	165	Gga/Tga																																																																														
MLL2	0	MSKCC	GRCh37	12	49446470	49446470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	183	595	2	ENST00000301067.7:c.1135G>A	p.Asp379Asn	p.D379N	ENST00000301067	NM_003482.3	379	Gat/Aat																																																																														
POLE	0	MSKCC	GRCh37	12	133219315	133219315	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	180	638	0	ENST00000320574.5:c.4729G>A	p.Glu1577Lys	p.E1577K	ENST00000320574	NM_006231.2	1577	Gag/Aag																																																																														
LATS2	0	MSKCC	GRCh37	13	21563108	21563108	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	281	1068	0	ENST00000382592.4:c.811C>G	p.Arg271Gly	p.R271G	ENST00000382592	NM_014572.2	271	Cgc/Ggc																																																																														
FLT3	0	MSKCC	GRCh37	13	28592720	28592720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	175	718	0	ENST00000241453.7:c.2425C>A	p.His809Asn	p.H809N	ENST00000241453	NM_004119.2	809	Cac/Aac																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972298	32972298	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	93	404	0	ENST00000380152.3:c.9649-1G>C		p.X3217_splice	ENST00000380152		3217																																																																															
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	177	877	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
NF1	0	MSKCC	GRCh37	17	29662020	29662020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	112	582	0	ENST00000358273.4:c.5977C>T	p.Gln1993Ter	p.Q1993*	ENST00000358273	NM_001042492.2	1993	Caa/Taa																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740417	58740417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	200	784	2	ENST00000305921.3:c.1322G>A	p.Arg441His	p.R441H	ENST00000305921	NM_003620.3	441	cGt/cAt																																																																														
SOX9	0	MSKCC	GRCh37	17	70120025	70120025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	58	180	0	ENST00000245479.2:c.1027C>G	p.Pro343Ala	p.P343A	ENST00000245479	NM_000346.3	343	Ccg/Gcg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25466790	25466790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	526	772	0	ENST00000264709.3:c.1913C>T	p.Ser638Phe	p.S638F	ENST00000264709	NM_175629.2	638	tCt/tTt																																																																														
ALK	0	MSKCC	GRCh37	2	29519902	29519902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	433	740	0	ENST00000389048.3:c.1669C>T	p.Arg557Cys	p.R557C	ENST00000389048	NM_004304.4	557	Cgt/Tgt																																																																														
ACVR1	0	MSKCC	GRCh37	2	158634733	158634734	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	88	410	4	ENST00000263640.3:c.452_453delGGinsAA	p.Arg151Lys	p.R151K	ENST00000263640	NM_001105.4	151	aGG/aAA																																																																														
ERBB4	0	MSKCC	GRCh37	2	212488721	212488721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	120	679	0	ENST00000342788.4:c.2128C>T	p.Leu710Phe	p.L710F	ENST00000342788	NM_005235.2	710	Ctt/Ttt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212543829	212543829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	145	628	0	ENST00000342788.4:c.1570C>T	p.Arg524Cys	p.R524C	ENST00000342788	NM_005235.2	524	Cgc/Tgc																																																																														
BARD1	0	MSKCC	GRCh37	2	215593411	215593411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	146	314	0	ENST00000260947.4:c.2323C>T	p.Leu775Phe	p.L775F	ENST00000260947	NM_000465.2	775	Ctt/Ttt																																																																														
PAK7	0	MSKCC	GRCh37	20	9546620	9546620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	190	633	0	ENST00000353224.5:c.1402G>A	p.Glu468Lys	p.E468K	ENST00000353224	NM_177990.2	468	Gag/Aag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730938	40730938	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	134	457	0	ENST00000373198.4:c.3598-1G>A		p.X1200_splice	ENST00000373198	NM_133170.3	1200																																																																															
RTEL1	0	MSKCC	GRCh37	20	62324274	62324275	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	561	1098	2	ENST00000508582.2:c.2841_2842delGGinsAA	p.Gly948Ser	p.G948S	ENST00000508582		947	aaGGgt/aaAAgt																																																																														
BCL6	0	MSKCC	GRCh37	3	187447607	187447607	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	198	852	0	ENST00000232014.4:c.586T>A	p.Ser196Thr	p.S196T	ENST00000232014	NM_001130845.1	196	Tcc/Acc																																																																														
TP63	0	MSKCC	GRCh37	3	189455558	189455558	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	168	711	1	ENST00000264731.3:c.92G>A	p.Trp31Ter	p.W31*	ENST00000264731	NM_003722.4	31	tGg/tAg																																																																														
FAT1	0	MSKCC	GRCh37	4	187627950	187627950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	230	863	0	ENST00000441802.2:c.3032C>T	p.Ser1011Phe	p.S1011F	ENST00000441802	NM_005245.3	1011	tCt/tTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	441	848	0				ENST00000310581	NM_198253.2																																																																																
CSF1R	0	MSKCC	GRCh37	5	149435634	149435634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	275	801	1	ENST00000286301.3:c.2509G>A	p.Asp837Asn	p.D837N	ENST00000286301	NM_005211.3	837	Gac/Aac																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137524714	137524716	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0015718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	119	686	0	ENST00000367739.4:c.653_655delAAG	p.Glu218del	p.E218del	ENST00000367739	NM_000416.2	218	gAAGga/gga																																																																														
RB1	0	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	122	802	0	ENST00000267163.4:c.1959delA	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	194	1007	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
GRIN2A	0	MSKCC	GRCh37	16	10274124	10274124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	180	1240	2	ENST00000330684.3:c.145C>A	p.Arg49Ser	p.R49S	ENST00000330684	NM_001134407.1	49	Cgc/Agc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78599580	78599580	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	96	766	1	ENST00000306801.3:c.253del	p.Glu85AsnfsTer117	p.E85Nfs*117	ENST00000306801	NM_020761.2	84	ttG/tt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259631	89259631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	41	694	1	ENST00000336596.2:c.775T>A	p.Cys259Ser	p.C259S	ENST00000336596	NM_005233.5	259	Tgc/Agc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66233072	66233072	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	A			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	38	830	0	ENST00000273854.3:c.1924+3A>T		p.X642_splice	ENST00000273854	NM_004439.5	642																																																																															
FAT1	0	MSKCC	GRCh37	4	187534266	187534266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	251	689	0	ENST00000441802.2:c.9460G>T	p.Ala3154Ser	p.A3154S	ENST00000441802	NM_005245.3	3154	Gca/Tca																																																																														
FLT4	0	MSKCC	GRCh37	5	180048703	180048703	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	114	1329	1	ENST00000261937.6:c.1859T>C	p.Leu620Pro	p.L620P	ENST00000261937	NM_182925.4	620	cTg/cCg																																																																														
KLF4	0	MSKCC	GRCh37	9	110250359	110250359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	27	1990	0	ENST00000374672.4:c.316G>C	p.Asp106His	p.D106H	ENST00000374672	NM_004235.4	106	Gac/Cac																																																																														
NF1	0	MSKCC	GRCh37	17	29559090	29559090	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0015719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	16	184	0	ENST00000358273.4:c.3198-1G>C		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	570	586	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087458	27087458	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	600	755	1	ENST00000324856.7:c.2032C>T	p.Gln678Ter	p.Q678*	ENST00000324856	NM_006015.4	678	Cag/Tag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	53	477	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
SOS1	0	MSKCC	GRCh37	2	39250284	39250284	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	295	1009	0	ENST00000402219.2:c.1285A>G	p.Ile429Val	p.I429V	ENST00000402219	NM_005633.3	429	Att/Gtt																																																																														
APC	0	MSKCC	GRCh37	5	112173540	112173541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCT			P-0015721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	63	381	0	ENST00000257430.4:c.2250_2253dup	p.Leu752IlefsTer5	p.L752Ifs*5	ENST00000257430	NM_000038.5	750	cca/ccATCTa																																																																														
TSC2	0	MSKCC	GRCh37	16	2136799	2136799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	687	959	4	ENST00000219476.3:c.4916G>A	p.Arg1639His	p.R1639H	ENST00000219476	NM_000548.3	1639	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	402	702	0	ENST00000269305.4:c.568C>T	p.Pro190Ser	p.P190S	ENST00000269305	NM_001126112.2	190	Cct/Tct																																																																														
CUL3	0	MSKCC	GRCh37	2	225339002	225339002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	36	490	3	ENST00000264414.4:c.2267G>A	p.Arg756Gln	p.R756Q	ENST00000264414	NM_003590.4	756	cGa/cAa																																																																														
ARID2	0	MSKCC	GRCh37	12	46246363	46246363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	249	357	0	ENST00000334344.6:c.4457T>C	p.Val1486Ala	p.V1486A	ENST00000334344	NM_152641.2	1486	gTt/gCt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487589	56487589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	366	525	0	ENST00000267101.3:c.1522G>A	p.Gly508Arg	p.G508R	ENST00000267101	NM_001982.3	508	Gga/Aga																																																																														
TERT	0	MSKCC	GRCh37	5	1266640	1266640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	363	554	0	ENST00000310581.5:c.2593C>T	p.Arg865Cys	p.R865C	ENST00000310581	NM_198253.2	865	Cgt/Tgt																																																																														
PTP4A1	0	MSKCC	GRCh37	6	64289181	64289181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	698	541	0	ENST00000370651.3:c.349C>G	p.Leu117Val	p.L117V	ENST00000370651	NM_003463.4	117	Cta/Gta																																																																														
PRDM1	0	MSKCC	GRCh37	6	106552789	106552789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	464	823	0	ENST00000369096.4:c.754G>C	p.Glu252Gln	p.E252Q	ENST00000369096	NM_001198.3	252	Gaa/Caa																																																																														
ATRX	0	MSKCC	GRCh37	X	76814186	76814186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	242	437	0	ENST00000373344.5:c.6458G>T	p.Arg2153Leu	p.R2153L	ENST00000373344	NM_000489.3	2153	cGc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	1162	440	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SOX9	0	MSKCC	GRCh37	17	70120527	70120527	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	900	827	0	ENST00000245479.2:c.1529G>C	p.Ter510SerextTer49	p.*510Sext*49	ENST00000245479	NM_000346.3	510	tGa/tCa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	455	677	3	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	155	216	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																														
ATM	0	MSKCC	GRCh37	11	108196143	108196143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	120	524	0	ENST00000278616.4:c.6679C>T	p.Arg2227Cys	p.R2227C	ENST00000278616	NM_000051.3	2227	Cgc/Tgc																																																																														
DDR2	0	MSKCC	GRCh37	1	162731139	162731139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	155	416	0	ENST00000367921.3:c.994C>T	p.Arg332Trp	p.R332W	ENST00000367921	NM_006182.2	332	Cgg/Tgg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2202758	2202758	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1197029182		P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	211	536	0	ENST00000398665.3:c.767G>A	p.Arg256Gln	p.R256Q	ENST00000398665	NM_032482.2	256	cGg/cAg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212056	5212056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	167	499	2	ENST00000357368.4:c.4975C>T	p.Arg1659Cys	p.R1659C	ENST00000357368	NM_002850.3	1659	Cgc/Tgc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71101744	71101744	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	53	237	0	ENST00000318789.4:c.454del	p.Glu152AsnfsTer54	p.E152Nfs*54	ENST00000318789	NM_032682.5	152	Gaa/aa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922306	178922306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	90	398	0	ENST00000263967.3:c.1075G>C	p.Gly359Arg	p.G359R	ENST00000263967	NM_006218.2	359	Ggt/Cgt																																																																														
FAM175A	0	MSKCC	GRCh37	4	84390203	84390203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113013207		P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	108	378	0	ENST00000321945.7:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000321945	NM_139076.2	193	cGa/cAa																																																																														
ROS1	0	MSKCC	GRCh37	6	117704647	117704647	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	86	224	0	ENST00000368508.3:c.2329G>T	p.Gly777Ter	p.G777*	ENST00000368508	NM_002944.2	777	Gga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	64	468	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	162	563	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891277	101891277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	82	569	1	ENST00000374994.4:c.238C>T	p.Arg80Ter	p.R80*	ENST00000374994	NM_004612.2	80	Cga/Tga																																																																														
WT1	0	MSKCC	GRCh37	11	32456737	32456737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	160	486	1	ENST00000332351.3:c.155G>A	p.Arg52His	p.R52H	ENST00000332351	NM_024426.4	52	cGt/cAt																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257412	19257412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1528	230	1024	2	ENST00000162023.5:c.721C>A	p.Pro241Thr	p.P241T	ENST00000162023		241	Ccc/Acc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248729	212248729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	64	301	0	ENST00000342788.4:c.3538C>T	p.Leu1180Phe	p.L1180F	ENST00000342788	NM_005235.2	1180	Ctt/Ttt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	172	630	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	120	522	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	124	598	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	110	496	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
TET1	0	MSKCC	GRCh37	10	70450648	70450648	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	152	514	0	ENST00000373644.4:c.5488A>T	p.Thr1830Ser	p.T1830S	ENST00000373644	NM_030625.2	1830	Act/Tct																																																																														
LATS2	0	MSKCC	GRCh37	13	21549162	21549162	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	169	787	0	ENST00000382592.4:c.3114C>A	p.Tyr1038Ter	p.Y1038*	ENST00000382592	NM_014572.2	1038	taC/taA																																																																														
MGA	0	MSKCC	GRCh37	15	42003149	42003149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	300	702	0	ENST00000219905.7:c.2686C>T	p.Arg896Ter	p.R896*	ENST00000219905	NM_001164273.1	896	Cga/Tga																																																																														
MLL4	0	MSKCC	GRCh37	19	36229083	36229083	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	139	676	0	ENST00000222270.7:c.7863C>A	p.Tyr2621Ter	p.Y2621*	ENST00000222270	NM_014727.1	2621	taC/taA																																																																														
RTEL1	0	MSKCC	GRCh37	20	62316879	62316879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	106	606	0	ENST00000508582.2:c.1267G>T	p.Val423Leu	p.V423L	ENST00000508582		423	Gtg/Ttg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177984	56177986	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0015730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	102	493	1	ENST00000399503.3:c.2965_2967del	p.Ser989del	p.S989del	ENST00000399503	NM_005921.1	986	cCTTct/cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	201	570	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	65	408	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																														
MRE11A	0	MSKCC	GRCh37	11	94200981	94200981	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	82	233	0	ENST00000323929.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000323929	NM_005591.3	366	Cga/Tga																																																																														
BRD4	0	MSKCC	GRCh37	19	15383860	15383867	+	frameshift_variant	Frame_Shift_Del	DEL	CATTACTG	CATTACTG	-			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	115	534	0	ENST00000263377.2:c.44_51del	p.Pro15ArgfsTer37	p.P15Rfs*37	ENST00000263377	NM_058243.2	15	cCAGTAATG/c																																																																														
RTEL1	0	MSKCC	GRCh37	20	62321450	62321450	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	69	534	0	ENST00000508582.2:c.2224G>C	p.Ala742Pro	p.A742P	ENST00000508582		742	Gcc/Ccc																																																																														
APC	0	MSKCC	GRCh37	5	112157629	112157653	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGTGTTCTAATGAAACTTTCATT	TGTGTGTTCTAATGAAACTTTCATT	-			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	34	326	0	ENST00000257430.4:c.1351_1375del	p.Cys451MetfsTer8	p.C451Mfs*8	ENST00000257430	NM_000038.5	450	gTGTGTGTTCTAATGAAACTTTCATTt/gt																																																																														
APC	0	MSKCC	GRCh37	5	112174851	112174854	+	frameshift_variant	Frame_Shift_Del	DEL	TTCC	TTCC	-			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	30	197	0	ENST00000257430.4:c.3563_3566del	p.Pro1188HisfsTer76	p.P1188Hfs*76	ENST00000257430	NM_000038.5	1187	aTTCCt/at																																																																														
APC	0	MSKCC	GRCh37	5	112175312	112175312	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	38	203	0	ENST00000257430.4:c.4021A>G	p.Ser1341Gly	p.S1341G	ENST00000257430	NM_000038.5	1341	Agt/Ggt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	77	517	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	52	630	1	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	162	543	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	170	603	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	137	441	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	324	824	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
APC	0	MSKCC	GRCh37	5	112174571	112174571	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	107	448	0	ENST00000257430.4:c.3281del	p.Gly1094AspfsTer32	p.G1094Dfs*32	ENST00000257430	NM_000038.5	1094	Gga/ga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8504308	8504308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	215	531	0	ENST00000356435.5:c.1775G>T	p.Gly592Val	p.G592V	ENST00000356435		592	gGc/gTc																																																																														
BCOR	0	MSKCC	GRCh37	X	39934345	39934345	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28935183		P-0015735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	256	678	1	ENST00000378444.4:c.254C>T	p.Pro85Leu	p.P85L	ENST00000378444	NM_001123385.1	85	cCg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	553	580	0	ENST00000263967.3:c.278G>T	p.Arg93Leu	p.R93L	ENST00000263967	NM_006218.2	93	cGg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578438	7578467	+	inframe_deletion	In_Frame_Del	DEL	CTTGTAGATGGCCATGGCGCGGACGCGGGT	CTTGTAGATGGCCATGGCGCGGACGCGGGT	-			P-0015737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	189	603	0	ENST00000269305.4:c.463_492del	p.Thr155_Lys164del	p.T155_K164del	ENST00000269305	NM_001126112.2	155	ACCCGCGTCCGCGCCATGGCCATCTACAAG/-																																																																														
AXL	0	MSKCC	GRCh37	19	41749549	41749549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	91	656	0	ENST00000301178.4:c.1474G>C	p.Gly492Arg	p.G492R	ENST00000301178	NM_021913.4	492	Ggt/Cgt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591204	67591257	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACT	TTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACT	-			P-0015737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	49	281	0	ENST00000274335.5:c.1746-44_1755del		p.X582_splice	ENST00000274335		582																																																																															
HIST1H1C	0	MSKCC	GRCh37	6	26056263	26056263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	33	325	0	ENST00000343677.2:c.394G>T	p.Val132Phe	p.V132F	ENST00000343677	NM_005319.3	132	Gtt/Ttt																																																																														
MYC	0	MSKCC	GRCh37	8	128752957	128752957	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	215	386	1	ENST00000377970.2:c.1118C>G	p.Thr373Arg	p.T373R	ENST00000377970	NM_002467.4	373	aCa/aGa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178951994	178951994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	52	537	0	ENST00000263967.3:c.3049G>C	p.Asp1017His	p.D1017H	ENST00000263967	NM_006218.2	1017	Gat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7578547	7578549	+	inframe_deletion	In_Frame_Del	DEL	GGG	GGG	-			P-0015739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1361	449	1307	1	ENST00000269305.4:c.381_383del	p.Pro128del	p.P128del	ENST00000269305	NM_001126112.2	127	tcCCCt/tct																																																																														
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	663	662	3	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478851	56478851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	494	632	5	ENST00000267101.3:c.307C>G	p.Arg103Gly	p.R103G	ENST00000267101	NM_001982.3	103	Cgc/Ggc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52696179	52696179	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	423	596	6	ENST00000394830.3:c.498del	p.Gln167LysfsTer7	p.Q167Kfs*7	ENST00000394830	NM_018313.4	166	ggG/gg																																																																														
ATRX	0	MSKCC	GRCh37	X	76855029	76855029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	10	201	0	ENST00000373344.5:c.5807A>G	p.Lys1936Arg	p.K1936R	ENST00000373344	NM_000489.3	1936	aAg/aGg																																																																														
MTOR	0	MSKCC	GRCh37	1	11288924	11288924	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	114	392	0	ENST00000361445.4:c.2831A>C	p.Asp944Ala	p.D944A	ENST00000361445	NM_004958.3	944	gAt/gCt																																																																														
CDH1	0	MSKCC	GRCh37	16	68862111	68862112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	221	647	0	ENST00000261769.5:c.2200dup	p.Arg734LysfsTer14	p.R734Kfs*14	ENST00000261769	NM_004360.3	733	-/A																																																																														
ASXL2	0	MSKCC	GRCh37	2	26101063	26101063	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	188	644	0	ENST00000435504.4:c.29del	p.Gly10AlafsTer12	p.G10Afs*12	ENST00000435504		10	gGc/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	254	594	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68844220	68844220	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	216	523	0	ENST00000261769.5:c.808del	p.Ser270LeufsTer12	p.S270Lfs*12	ENST00000261769	NM_004360.3	270	Tct/ct																																																																														
NTRK2	0	MSKCC	GRCh37	9	87322758	87322758	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	64	270	0	ENST00000277120.3:c.360-1G>A		p.X120_splice	ENST00000277120		120																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2360	1076	727	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0015745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	904	684	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																														
KDR	0	MSKCC	GRCh37	4	55968673	55968673	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	311	517	3	ENST00000263923.4:c.1990C>T	p.Arg664Cys	p.R664C	ENST00000263923	NM_002253.2	664	Cgt/Tgt																																																																														
JAK1	0	MSKCC	GRCh37	1	65304180	65304180	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	190	520	0	ENST00000342505.4:c.2935C>T	p.Gln979Ter	p.Q979*	ENST00000342505	NM_002227.2	979	Cag/Tag																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257565	19257565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	533	764	0	ENST00000162023.5:c.661G>A	p.Gly221Arg	p.G221R	ENST00000162023		221	Gga/Aga																																																																														
EP300	0	MSKCC	GRCh37	22	41568501	41568501	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	277	356	0	ENST00000263253.7:c.4453-2A>G		p.X1485_splice	ENST00000263253	NM_001429.3	1485																																																																															
GATA3	0	MSKCC	GRCh37	10	8100713	8100713	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	295	679	0	ENST00000346208.3:c.687C>A	p.Tyr229Ter	p.Y229*	ENST00000346208		229	taC/taA																																																																														
TET1	0	MSKCC	GRCh37	10	70332268	70332268	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	97	349	0	ENST00000373644.4:c.174delT	p.Lys59ArgfsTer16	p.K59Rfs*16	ENST00000373644	NM_030625.2	58	gTt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	233	477	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
MSH2	0	MSKCC	GRCh37	2	47702232	47702232	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	88	468	0	ENST00000233146.2:c.1828C>G	p.His610Asp	p.H610D	ENST00000233146	NM_000251.2	610	Cac/Gac																																																																														
MSH2	0	MSKCC	GRCh37	2	47702337	47702337	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	96	339	0	ENST00000233146.2:c.1933C>G	p.Gln645Glu	p.Q645E	ENST00000233146	NM_000251.2	645	Caa/Gaa																																																																														
MSH2	0	MSKCC	GRCh37	2	47703705	47703705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	72	339	0	ENST00000233146.2:c.2205C>G	p.Ile735Met	p.I735M	ENST00000233146	NM_000251.2	735	atC/atG																																																																														
CASP8	0	MSKCC	GRCh37	2	202150040	202150040	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	128	471	2	ENST00000358485.4:c.1481G>A	p.Arg494Gln	p.R494Q	ENST00000358485	NM_001080125.1	494	cGa/cAa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212495267	212495267	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	141	587	1	ENST00000342788.4:c.1999G>T	p.Val667Leu	p.V667L	ENST00000342788	NM_005235.2	667	Gtg/Ttg																																																																														
MLL3	0	MSKCC	GRCh37	7	151864464	151864464	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	52	207	0	ENST00000262189.6:c.9518-1G>C		p.X3173_splice	ENST00000262189	NM_170606.2	3173																																																																															
ARAF	0	MSKCC	GRCh37	X	47426735	47426735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	126	246	0	ENST00000377045.4:c.980G>T	p.Gly327Val	p.G327V	ENST00000377045	NM_001654.4	327	gGg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	471	400	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	175	170	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	269	493	1	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																																																														
RAD54L	0	MSKCC	GRCh37	1	46726236	46726236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	233	339	1	ENST00000371975.4:c.430G>T	p.Val144Phe	p.V144F	ENST00000371975	NM_003579.3	144	Gtt/Ttt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828461	72828461	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139821312		P-0015750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	129	414	0	ENST00000268489.5:c.8120C>T	p.Ala2707Val	p.A2707V	ENST00000268489	NM_006885.3	2707	gCg/gTg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223390	53223390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	365	627	0	ENST00000375401.3:c.3969G>T	p.Glu1323Asp	p.E1323D	ENST00000375401	NM_004187.3	1323	gaG/gaT																																																																														
STAG2	0	MSKCC	GRCh37	X	123220555	123220555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	148	475	1	ENST00000218089.9:c.3212G>A	p.Arg1071Gln	p.R1071Q	ENST00000218089	NM_001042749.1	1071	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	669	704	1	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	314	458	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	314	458	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	344	620	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	314	458	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610265	10610265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	391	827	3	ENST00000171111.5:c.445G>A	p.Glu149Lys	p.E149K	ENST00000171111	NM_203500.1	149	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023420	27023420	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	318	560	1	ENST00000324856.7:c.526C>T	p.Gln176Ter	p.Q176*	ENST00000324856	NM_006015.4	176	Caa/Taa																																																																														
SHOC2	0	MSKCC	GRCh37	10	112745438	112745438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	141	726	0	ENST00000369452.4:c.756C>A	p.His252Gln	p.H252Q	ENST00000369452	NM_007373.3	252	caC/caA																																																																														
MLL2	0	MSKCC	GRCh37	12	49435723	49435723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	365	643	2	ENST00000301067.7:c.6160G>A	p.Ala2054Thr	p.A2054T	ENST00000301067	NM_003482.3	2054	Gca/Aca																																																																														
EP300	0	MSKCC	GRCh37	22	41548264	41548264	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	248	554	1	ENST00000263253.7:c.3052G>C	p.Glu1018Gln	p.E1018Q	ENST00000263253	NM_001429.3	1018	Gag/Cag																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156609	55156609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	366	639	0	ENST00000257290.5:c.3010G>A	p.Glu1004Lys	p.E1004K	ENST00000257290	NM_006206.4	1004	Gag/Aag																																																																														
TET2	0	MSKCC	GRCh37	4	106164830	106164830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	271	544	3	ENST00000380013.4:c.3698G>T	p.Trp1233Leu	p.W1233L	ENST00000380013	NM_001127208.2	1233	tGg/tTg																																																																														
TET2	0	MSKCC	GRCh37	4	106190854	106190854	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	245	509	0	ENST00000380013.4:c.4132T>C	p.Cys1378Arg	p.C1378R	ENST00000380013	NM_001127208.2	1378	Tgt/Cgt																																																																														
JAK2	0	MSKCC	GRCh37	9	5050825	5050825	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	111	603	0	ENST00000381652.3:c.608C>G	p.Ser203Cys	p.S203C	ENST00000381652	NM_004972.3	203	tCt/tGt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938516	44938516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	36	305	0	ENST00000377967.4:c.3064C>A	p.His1022Asn	p.H1022N	ENST00000377967	NM_021140.2	1022	Cat/Aat																																																																														
TBX3	0	MSKCC	GRCh37	12	115118835	115118835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	363	657	2	ENST00000257566.3:c.506G>A	p.Arg169Gln	p.R169Q	ENST00000257566	NM_016569.3	169	cGg/cAg																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40682085	40682085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	246	767	0	ENST00000249776.8:c.640C>T	p.Arg214Trp	p.R214W	ENST00000249776	NM_033286.3	214	Cgg/Tgg																																																																														
FANCA	0	MSKCC	GRCh37	16	89809237	89809237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	116	816	0	ENST00000389301.3:c.3736C>G	p.Leu1246Val	p.L1246V	ENST00000389301	NM_000135.2	1246	Cta/Gta																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15299899	15299899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	474	970	1	ENST00000263388.2:c.1279C>T	p.Arg427Cys	p.R427C	ENST00000263388	NM_000435.2	427	Cgc/Tgc																																																																														
NF2	0	MSKCC	GRCh37	22	30051608	30051608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	306	539	0	ENST00000338641.4:c.542C>T	p.Pro181Leu	p.P181L	ENST00000338641	NM_000268.3	181	cCg/cTg																																																																														
ATR	0	MSKCC	GRCh37	3	142274888	142274889	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0015763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1520	768	864	0	ENST00000350721.4:c.2171_2172del	p.Leu724HisfsTer10	p.L724Hfs*10	ENST00000350721	NM_001184.3	724	cTG/c																																																																														
IGF2	0	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	85	548	3	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	240	671	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1188	288	653	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
STAT5A	0	MSKCC	GRCh37	17	40462652	40462652	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139614126		P-0015764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	123	464	0	ENST00000345506.4:c.2350G>A	p.Gly784Ser	p.G784S	ENST00000345506	NM_003152.3	784	Ggt/Agt																																																																														
ERCC2	0	MSKCC	GRCh37	19	45855610	45855610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	77	446	2	ENST00000391945.4:c.2047C>T	p.Arg683Trp	p.R683W	ENST00000391945	NM_000400.3	683	Cgg/Tgg																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	70	435	2	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0015764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	122	552	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
FAT1	0	MSKCC	GRCh37	4	187517833	187517833	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	39	282	0	ENST00000441802.2:c.12861del	p.Phe4287LeufsTer62	p.F4287Lfs*62	ENST00000441802	NM_005245.3	4287	ttT/tt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27024003	27024003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	104	163	0	ENST00000324856.7:c.1109G>T	p.Gly370Val	p.G370V	ENST00000324856	NM_006015.4	370	gGg/gTg																																																																														
IL10	0	MSKCC	GRCh37	1	206941996	206941996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	202	447	0	ENST00000423557.1:c.522G>A	p.Met174Ile	p.M174I	ENST00000423557	NM_000572.2	174	atG/atA																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18719980	18719980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	258	543	1	ENST00000266497.5:c.3877G>A	p.Glu1293Lys	p.E1293K	ENST00000266497		1293	Gaa/Aaa																																																																														
ARID2	0	MSKCC	GRCh37	12	46287416	46287416	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	195	442	1	ENST00000334344.6:c.5275G>T	p.Glu1759Ter	p.E1759*	ENST00000334344	NM_152641.2	1759	Gaa/Taa																																																																														
FLT1	0	MSKCC	GRCh37	13	29041237	29041237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	333	607	0	ENST00000282397.4:c.191C>T	p.Pro64Leu	p.P64L	ENST00000282397	NM_002019.4	64	cCt/cTt																																																																														
NUP93	0	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	279	511	1	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
FANCA	0	MSKCC	GRCh37	16	89833590	89833590	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	415	655	0	ENST00000389301.3:c.2560G>C	p.Asp854His	p.D854H	ENST00000389301	NM_000135.2	854	Gat/Cat																																																																														
CHEK2	0	MSKCC	GRCh37	22	29105996	29105996	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	132	400	0	ENST00000328354.6:c.844C>G	p.His282Asp	p.H282D	ENST00000328354	NM_007194.3	282	Cat/Gat																																																																														
CHEK2	0	MSKCC	GRCh37	22	29106038	29106038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	179	413	0	ENST00000328354.6:c.802C>T	p.Leu268Phe	p.L268F	ENST00000328354	NM_007194.3	268	Ctc/Ttc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	204	265	0	ENST00000318789.4:c.1531-1G>C		p.X511_splice	ENST00000318789	NM_032682.5	511																																																																															
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	785	874	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	214	592	0				ENST00000310581	NM_198253.2																																																																																
NSD1	0	MSKCC	GRCh37	5	176619016	176619016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	147	587	0	ENST00000439151.2:c.1059G>A	p.Met353Ile	p.M353I	ENST00000439151	NM_022455.4	353	atG/atA																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32171599	32171602	+	missense_variant	Missense_Mutation	ONP	GTCC	GTCC	CTCT			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	830	804	0	ENST00000375023.3:c.3176_3179delinsAGAG	p.Gly1059_Thr1060delinsGluSer	p.G1059_T1060delinsES	ENST00000375023	NM_004557.3	1059	gGGACc/gAGAGc																																																																														
MLL3	0	MSKCC	GRCh37	7	151878464	151878464	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	436	875	0	ENST00000262189.6:c.6481C>T	p.Gln2161Ter	p.Q2161*	ENST00000262189	NM_170606.2	2161	Caa/Taa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922817	44922826	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGCCTGCC	CCTGCCTGCC	-			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	277	245	0	ENST00000377967.4:c.1679_1688del	p.Pro560LeufsTer30	p.P560Lfs*30	ENST00000377967	NM_021140.2	560	CCTGCCTGCCct/ct																																																																														
RBM10	0	MSKCC	GRCh37	X	47039408	47039408	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	414	381	0	ENST00000329236.7:c.800G>C	p.Gly267Ala	p.G267A	ENST00000329236	NM_001204466.1	267	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	22	542	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SDHD	0	MSKCC	GRCh37	11	111958699	111958699	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	74	693	0	ENST00000375549.3:c.169+2T>C		p.X57_splice	ENST00000375549	NM_003002.3	57																																																																															
MLL	0	MSKCC	GRCh37	11	118366456	118366456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	52	492	0	ENST00000534358.1:c.5405A>G	p.Asp1802Gly	p.D1802G	ENST00000534358	NM_005933.3	1802	gAc/gGc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9928076	9928076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	45	475	0	ENST00000330684.3:c.1663G>A	p.Ala555Thr	p.A555T	ENST00000330684	NM_001134407.1	555	Gcc/Acc																																																																														
TCEB1	0	MSKCC	GRCh37	8	74858992	74858992	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	65	301	0	ENST00000284811.8:c.212C>A	p.Ser71Ter	p.S71*	ENST00000284811		71	tCg/tAg																																																																														
SETD2	0	MSKCC	GRCh37	3	47058687	47058687	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	90	623	0	ENST00000409792.3:c.7591G>T	p.Glu2531Ter	p.E2531*	ENST00000409792	NM_014159.6	2531	Gag/Tag																																																																														
RB1	0	MSKCC	GRCh37	13	48939033	48939033	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	75	303	0	ENST00000267163.4:c.865A>C	p.Lys289Gln	p.K289Q	ENST00000267163	NM_000321.2	289	Aaa/Caa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52651336	52651336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	118	529	0	ENST00000394830.3:c.1760T>C	p.Ile587Thr	p.I587T	ENST00000394830	NM_018313.4	587	aTa/aCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0015769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	387	568	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	300	891	0	ENST00000269305.4:c.389T>C	p.Leu130Pro	p.L130P	ENST00000269305	NM_001126112.2	130	cTc/cCc																																																																														
AKT3	0	MSKCC	GRCh37	1	243776993	243776993	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	54	706	1	ENST00000263826.5:c.676G>T	p.Glu226Ter	p.E226*	ENST00000263826	NM_005465.4	226	Gaa/Taa																																																																														
AKT3	0	MSKCC	GRCh37	1	243777014	243777014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	43	599	0	ENST00000263826.5:c.655G>A	p.Asp219Asn	p.D219N	ENST00000263826	NM_005465.4	219	Gac/Aac																																																																														
PALB2	0	MSKCC	GRCh37	16	23640590	23640590	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	173	609	1	ENST00000261584.4:c.2521del	p.Thr841GlnfsTer10	p.T841Qfs*10	ENST00000261584	NM_024675.3	841	Aca/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	27	534	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578399	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGG	GGTGG	-			P-0015771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	26	612	0	ENST00000269305.4:c.531_535del	p.His178Ter	p.H178*	ENST00000269305	NM_001126112.2	177	ccCCACCat/ccat																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			P-0015774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	178	874	0	ENST00000269571.5:c.2326_2327insTGT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTGTgt																																																																														
GLI1	0	MSKCC	GRCh37	12	57857812	57857812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	137	955	2	ENST00000228682.2:c.131C>T	p.Ala44Val	p.A44V	ENST00000228682	NM_005269.2	44	gCt/gTt																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66679698	66679698	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	104	762	0	ENST00000307102.5:c.13A>T	p.Lys5Ter	p.K5*	ENST00000307102	NM_002755.3	5	Aag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0015775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	318	612	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
APC	0	MSKCC	GRCh37	5	112116517	112116517	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	159	453	0	ENST00000257430.4:c.562C>T	p.Gln188Ter	p.Q188*	ENST00000257430	NM_000038.5	188	Caa/Taa																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0015777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	373	640	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	1115	866	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435150	18435150	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	88	488	0	ENST00000266497.5:c.135T>A	p.Asp45Glu	p.D45E	ENST00000266497		45	gaT/gaA																																																																														
ERBB3	0	MSKCC	GRCh37	12	56480395	56480395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	802	654	2	ENST00000267101.3:c.502A>G	p.Arg168Gly	p.R168G	ENST00000267101	NM_001982.3	168	Agg/Ggg																																																																														
TOP1	0	MSKCC	GRCh37	20	39721145	39721145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	86	679	2	ENST00000361337.2:c.648G>T	p.Lys216Asn	p.K216N	ENST00000361337	NM_003286.2	216	aaG/aaT																																																																														
STK11	0	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	414	702	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	398	622	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FLT3	0	MSKCC	GRCh37	13	28609742	28609742	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	443	742	0	ENST00000241453.7:c.1487T>G	p.Val496Gly	p.V496G	ENST00000241453	NM_004119.2	496	gTg/gGg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095840	178095898	+	frameshift_variant	Frame_Shift_Del	DEL	TAATGCAAGTTGAGCTTCATTGAACTGCTCTTTGGACATCATTTCGTTGAAGTCAACAA	TAATGCAAGTTGAGCTTCATTGAACTGCTCTTTGGACATCATTTCGTTGAAGTCAACAA	-			P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	72	495	0	ENST00000397062.3:c.1433_1491delTTGTTGACTTCAACGAAATGATGTCCAAAGAGCAGTTCAATGAAGCTCAACTTGCATTA	p.Val478AspfsTer6	p.V478Dfs*6	ENST00000397062	NM_006164.4	478	gTTGTTGACTTCAACGAAATGATGTCCAAAGAGCAGTTCAATGAAGCTCAACTTGCATTA/g																																																																														
DROSHA	0	MSKCC	GRCh37	5	31508847	31508847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	100	596	0	ENST00000344624.3:c.1468G>T	p.Asp490Tyr	p.D490Y	ENST00000344624		490	Gac/Tac																																																																														
MET	0	MSKCC	GRCh37	7	116339299	116339299	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	174	523	0	ENST00000397752.3:c.161A>T	p.Asn54Ile	p.N54I	ENST00000397752	NM_000245.2	54	aAt/aTt																																																																														
JAK2	0	MSKCC	GRCh37	9	5078309	5078309	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	115	403	0	ENST00000381652.3:c.1996G>T	p.Glu666Ter	p.E666*	ENST00000381652	NM_004972.3	666	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	188	552	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	427	797	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SLX4	0	MSKCC	GRCh37	16	3633395	3633395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	413	909	1	ENST00000294008.3:c.4856C>T	p.Pro1619Leu	p.P1619L	ENST00000294008	NM_032444.2	1619	cCg/cTg																																																																														
APC	0	MSKCC	GRCh37	5	112175761	112175762	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0015781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	122	361	0	ENST00000257430.4:c.4472_4473delTT	p.Phe1491CysfsTer22	p.F1491Cfs*22	ENST00000257430	NM_000038.5	1490	caTTtt/catt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	256	852	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	405	635	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	142	607	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
JAK1	0	MSKCC	GRCh37	1	65330537	65330537	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	329	663	0	ENST00000342505.4:c.1109delC	p.Pro370LeufsTer7	p.P370Lfs*7	ENST00000342505	NM_002227.2	370	cCt/ct																																																																														
PRKD1	0	MSKCC	GRCh37	14	30108091	30108091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80271647		P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	352	718	0	ENST00000331968.5:c.716C>T	p.Ser239Leu	p.S239L	ENST00000331968	NM_002742.2	239	tCg/tTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991866	72991866	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201721439		P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	736	904	2	ENST00000268489.5:c.2179C>T	p.Arg727Cys	p.R727C	ENST00000268489	NM_006885.3	727	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	409	868	0	ENST00000269305.4:c.672+1delG		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
TOP1	0	MSKCC	GRCh37	20	39690102	39690102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1687	149	673	0	ENST00000361337.2:c.127G>C	p.Asp43His	p.D43H	ENST00000361337	NM_003286.2	43	Gac/Cac																																																																														
INHBA	0	MSKCC	GRCh37	7	41729658	41729658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	129	571	1	ENST00000242208.4:c.871C>A	p.Pro291Thr	p.P291T	ENST00000242208	NM_002192.2	291	Cct/Act																																																																														
KDM5C	0	MSKCC	GRCh37	X	53245325	53245325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	444	785	0	ENST00000375401.3:c.712A>G	p.Ile238Val	p.I238V	ENST00000375401	NM_004187.3	238	Atc/Gtc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	80	538	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	292	711	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78867533	78867533	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185118480		P-0015783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	263	616	0	ENST00000306801.3:c.2269G>A	p.Gly757Arg	p.G757R	ENST00000306801	NM_020761.2	757	Gga/Aga																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266010	41266578	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTG	TTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTG	-			P-0015783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	112	255	0	ENST00000349496.5:c.14-7_375delTTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTG		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
CTNNB1	0	MSKCC	GRCh37	3	41277264	41277264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	222	504	0	ENST00000349496.5:c.1733A>G	p.His578Arg	p.H578R	ENST00000349496	NM_001904.3	578	cAc/cGc																																																																														
SDHB	0	MSKCC	GRCh37	1	17355201	17355201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	168	704	0	ENST00000375499.3:c.317A>G	p.Asn106Ser	p.N106S	ENST00000375499	NM_003000.2	106	aAt/aGt																																																																														
FGF19	0	MSKCC	GRCh37	11	69514038	69514038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	361	582	0	ENST00000294312.3:c.643G>A	p.Glu215Lys	p.E215K	ENST00000294312	NM_005117.2	215	Gag/Aag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18716386	18716386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	346	638	0	ENST00000266497.5:c.3733C>A	p.Leu1245Ile	p.L1245I	ENST00000266497		1245	Ctt/Att																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	490	635	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
HNF1A	0	MSKCC	GRCh37	12	121437296	121437296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1445	319	904	1	ENST00000257555.6:c.1634C>T	p.Ser545Leu	p.S545L	ENST00000257555		545	tCa/tTa																																																																														
DIS3	0	MSKCC	GRCh37	13	73336073	73336073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	141	275	0	ENST00000377767.4:c.2330C>T	p.Ser777Leu	p.S777L	ENST00000377767	NM_014953.3	777	tCa/tTa																																																																														
FANCA	0	MSKCC	GRCh37	16	89882998	89882998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	95	393	0	ENST00000389301.3:c.26C>T	p.Ser9Phe	p.S9F	ENST00000389301	NM_000135.2	9	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7572962	7572974	+	frameshift_variant	Frame_Shift_Del	DEL	GTTTTTTATGGCG	GTTTTTTATGGCG	-			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	296	574	0	ENST00000269305.4:c.1135_1147delCGCCATAAAAAAC	p.Arg379SerfsTer39	p.R379Sfs*39	ENST00000269305	NM_001126112.2	379	CGCCATAAAAAACtc/tc																																																																														
NF1	0	MSKCC	GRCh37	17	29556877	29556877	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	72	396	0	ENST00000358273.4:c.2875C>T	p.Gln959Ter	p.Q959*	ENST00000358273	NM_001042492.2	959	Caa/Taa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	316	460	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																														
PMS1	0	MSKCC	GRCh37	2	190718761	190718761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	90	464	0	ENST00000441310.2:c.919G>A	p.Asp307Asn	p.D307N	ENST00000441310	NM_000534.4	307	Gat/Aat																																																																														
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	187	329	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735464	40735464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	503	741	0	ENST00000373198.4:c.3409G>A	p.Glu1137Lys	p.E1137K	ENST00000373198	NM_133170.3	1137	Gag/Aag																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42842606	42842606	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	173	734	0	ENST00000398585.3:c.1251G>A	p.Trp417Ter	p.W417*	ENST00000398585	NM_001135099.1	417	tgG/tgA																																																																														
SETD2	0	MSKCC	GRCh37	3	47129600	47129600	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	79	589	0	ENST00000409792.3:c.5277+3G>A		p.X1759_splice	ENST00000409792	NM_014159.6	1759																																																																															
PBRM1	0	MSKCC	GRCh37	3	52598142	52598142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	394	718	0	ENST00000394830.3:c.3724C>T	p.Gln1242Ter	p.Q1242*	ENST00000394830	NM_018313.4	1242	Cag/Tag																																																																														
ATR	0	MSKCC	GRCh37	3	142226925	142226925	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	126	662	0	ENST00000350721.4:c.4879C>T	p.Gln1627Ter	p.Q1627*	ENST00000350721	NM_001184.3	1627	Cag/Tag																																																																														
PLK2	0	MSKCC	GRCh37	5	57751931	57751931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55768901		P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	304	618	0	ENST00000274289.3:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000274289	NM_006622.3	436	Gaa/Aaa																																																																														
MDC1	0	MSKCC	GRCh37	6	30681829	30681829	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	412	707	1	ENST00000376406.3:c.268C>T	p.Arg90Ter	p.R90*	ENST00000376406	NM_014641.2	90	Cga/Tga																																																																														
MET	0	MSKCC	GRCh37	7	116339898	116339898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	132	589	0	ENST00000397752.3:c.760G>A	p.Glu254Lys	p.E254K	ENST00000397752	NM_000245.2	254	Gaa/Aaa																																																																														
MLL3	0	MSKCC	GRCh37	7	151896396	151896396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	135	662	0	ENST00000262189.6:c.4241C>T	p.Ser1414Leu	p.S1414L	ENST00000262189	NM_170606.2	1414	tCa/tTa																																																																														
PREX2	0	MSKCC	GRCh37	8	68942825	68942825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1601	196	807	1	ENST00000288368.4:c.637G>A	p.Glu213Lys	p.E213K	ENST00000288368	NM_024870.2	213	Gag/Aag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465542	8465542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	413	775	0	ENST00000356435.5:c.3638G>A	p.Gly1213Glu	p.G1213E	ENST00000356435		1213	gGa/gAa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87342695	87342695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	377	711	0	ENST00000277120.3:c.980C>T	p.Ser327Phe	p.S327F	ENST00000277120		327	tCc/tTc																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915922	127915922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	163	706	1	ENST00000373547.4:c.559C>T	p.His187Tyr	p.H187Y	ENST00000373547	NM_002721.4	187	Cat/Tat																																																																														
MED12	0	MSKCC	GRCh37	X	70341625	70341625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	494	816	0	ENST00000374080.3:c.1060C>G	p.Gln354Glu	p.Q354E	ENST00000374080		354	Cag/Gag																																																																														
TP53	0	MSKCC	GRCh37	17	7577075	7577075	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	82	746	0	ENST00000269305.4:c.863delA	p.Asn288IlefsTer57	p.N288Ifs*57	ENST00000269305	NM_001126112.2	288	aAt/at																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088723	27088723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	97	672	0	ENST00000324856.7:c.2332G>A	p.Gly778Arg	p.G778R	ENST00000324856	NM_006015.4	778	Gga/Aga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	50	508	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	63	512	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	25	424	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
RB1	0	MSKCC	GRCh37	13	49030486	49030486	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	63	344	2	ENST00000267163.4:c.1960+1G>A		p.X654_splice	ENST00000267163	NM_000321.2	654																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	45	422	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	24	247	0	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	54	568	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	118	644	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0015791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	57	604	1				ENST00000310581	NM_198253.2																																																																																
MPL	0	MSKCC	GRCh37	1	43804304	43804304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	30	644	1	ENST00000372470.3:c.304C>T	p.Arg102Cys	p.R102C	ENST00000372470	NM_005373.2	102	Cgt/Tgt																																																																														
RET	0	MSKCC	GRCh37	10	43613889	43613889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	17	815	0	ENST00000355710.3:c.2353C>A	p.Pro785Thr	p.P785T	ENST00000355710	NM_020975.4	785	Cca/Aca																																																																														
ARID2	0	MSKCC	GRCh37	12	46243946	46243947	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0015791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	32	590	0	ENST00000334344.6:c.2041_2042delGT	p.Val681PhefsTer25	p.V681Ffs*25	ENST00000334344	NM_152641.2	680	acTGtt/actt																																																																														
DICER1	0	MSKCC	GRCh37	14	95562956	95562956	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	33	441	0	ENST00000343455.3:c.4301A>G	p.Glu1434Gly	p.E1434G	ENST00000343455	NM_177438.2	1434	gAa/gGa																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7979022	7979022	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	35	602	0	ENST00000319144.4:c.1545G>C	p.Glu515Asp	p.E515D	ENST00000319144	NM_001139.2	515	gaG/gaC																																																																														
NCOR1	0	MSKCC	GRCh37	17	16055258	16055258	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0015791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	41	529	0	ENST00000268712.3:c.842+2T>C		p.X281_splice	ENST00000268712	NM_006311.3	281																																																																															
CSF1R	0	MSKCC	GRCh37	5	149441093	149441093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	75	831	1	ENST00000286301.3:c.1819G>A	p.Glu607Lys	p.E607K	ENST00000286301	NM_005211.3	607	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	61	673	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																														
AKT1	0	MSKCC	GRCh37	14	105239419	105239419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	117	605	0	ENST00000349310.3:c.968A>G	p.Asp323Gly	p.D323G	ENST00000349310	NM_001014432.1	323	gAc/gGc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46743611	46743757	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	GTTTATCCTGGATGAAGCTAGCCTCAGTGACACACATGACAGGTGGGGAAGTGCCCTAACCATTATCTCTAAGCTACCCACACAGTAGGGAGATGGGATCTGTAGTGACTTCAGCTGTGCCTTCTGTCCCTAGGTTGCACTGCCGAC	GTTTATCCTGGATGAAGCTAGCCTCAGTGACACACATGACAGGTGGGGAAGTGCCCTAACCATTATCTCTAAGCTACCCACACAGTAGGGAGATGGGATCTGTAGTGACTTCAGCTGTGCCTTCTGTCCCTAGGTTGCACTGCCGAC	-			P-0015794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	59	629	1	ENST00000371975.4:c.1995_2050delTATCCTGGATGAAGCTAGCCTCAGTGACACACATGACAGGTGGGGAAGTGCCCTAACCATTATCTCTAAGCTACCCACACAGTAGGGAGATGGGATCTGTAGTGACTTCAGCTGTGCCTTCTGTCCCTAGGTTGCACTGCCGACGTT		p.X665_splice	ENST00000371975	NM_003579.3	665	ctGTTTATCCTGGATGAAGCTAGCCTCAGTGACACACATGACAGGTGGGGAAGTGCCCTAACCATTATCTCTAAGCTACCCACACAGTAGGGAGATGGGATCTGTAGTGACTTCAGCTGTGCCTTCTGTCCCTAGGTTGCACTGCCGACgt/ctgt																																																																														
SOS1	0	MSKCC	GRCh37	2	39250347	39250347	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	44	732	0	ENST00000402219.2:c.1222T>C	p.Tyr408His	p.Y408H	ENST00000402219	NM_005633.3	408	Tat/Cat																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982134	93982134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	39	377	1	ENST00000369303.4:c.1331C>T	p.Ser444Leu	p.S444L	ENST00000369303	NM_004440.3	444	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	686	637	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	352	597	0	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
PIK3C3	0	MSKCC	GRCh37	18	39567844	39567844	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	35	416	0	ENST00000262039.4:c.600A>C	p.Glu200Asp	p.E200D	ENST00000262039	NM_002647.2	200	gaA/gaC																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095913	178095914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	69	500	0	ENST00000397062.3:c.1417dup	p.Ile473AsnfsTer3	p.I473Nfs*3	ENST00000397062	NM_006164.4	473	atc/aAtc																																																																														
CUL3	0	MSKCC	GRCh37	2	225422405	225422405	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	68	644	0	ENST00000264414.4:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000264414	NM_003590.4	79	Gaa/Caa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	319	501	2	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	319	501	2	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	256	648	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag																																																																														
INPPL1	0	MSKCC	GRCh37	11	71943380	71943380	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	158	498	1	ENST00000298229.2:c.1712G>A	p.Arg571Gln	p.R571Q	ENST00000298229	NM_001567.3	571	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	395	624	1	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
BRD4	0	MSKCC	GRCh37	19	15365053	15365053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	176	672	0	ENST00000263377.2:c.2068G>T	p.Ala690Ser	p.A690S	ENST00000263377	NM_058243.2	690	Gcc/Tcc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942060	71942113	+	inframe_deletion	In_Frame_Del	DEL	GTGACATCCTGGTTCACATCGAAGGGTCTGGGGAAGACCCTGGACGAGGTCACA	GTGACATCCTGGTTCACATCGAAGGGTCTGGGGAAGACCCTGGACGAGGTCACA	-			P-0015810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	172	840	1	ENST00000298229.2:c.1329_1382del	p.Ser444_Thr461del	p.S444_T461del	ENST00000298229	NM_001567.3	442	GTGACATCCTGGTTCACATCGAAGGGTCTGGGGAAGACCCTGGACGAGGTCACA/-																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204782	94204782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	74	477	0	ENST00000323929.3:c.803G>A	p.Ser268Asn	p.S268N	ENST00000323929	NM_005591.3	268	aGc/aAc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885481	111885481	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	162	585	0	ENST00000341259.2:c.1258G>C	p.Glu420Gln	p.E420Q	ENST00000341259	NM_005475.2	420	Gag/Cag																																																																														
FLT1	0	MSKCC	GRCh37	13	28903784	28903784	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	186	672	0	ENST00000282397.4:c.2675T>C	p.Val892Ala	p.V892A	ENST00000282397	NM_002019.4	892	gTt/gCt																																																																														
EZH1	0	MSKCC	GRCh37	17	40864505	40864505	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0015810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	168	562	0	ENST00000428826.2:c.1205-2A>G		p.X402_splice	ENST00000428826		402																																																																															
BRCA1	0	MSKCC	GRCh37	17	41243037	41243037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	187	563	0	ENST00000357654.3:c.4109C>G	p.Ser1370Cys	p.S1370C	ENST00000357654	NM_007294.3	1370	tCt/tGt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143226671	143226671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	108	417	1	ENST00000262992.4:c.443C>T	p.Ala148Val	p.A148V	ENST00000262992	NM_001101669.1	148	gCc/gTc																																																																														
SESN1	0	MSKCC	GRCh37	6	109321749	109321750	+	missense_variant	Missense_Mutation	DNP	TC	TC	GG			P-0015810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	171	829	1	ENST00000436639.2:c.673_674delinsCC	p.Glu225Pro	p.E225P	ENST00000436639	NM_014454.2	225	GAa/CCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	250	301	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	49	582	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BRAF	0	MSKCC	GRCh37	7	140453134	140453136	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0015811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	224	594	0	ENST00000288602.6:c.1799_1801del	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	600	gTGAaa/gaa																																																																														
KDM5A	0	MSKCC	GRCh37	12	427345	427345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	427	541	0	ENST00000399788.2:c.2824A>G	p.Met942Val	p.M942V	ENST00000399788	NM_001042603.1	942	Atg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	311	581	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	272	596	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
CIC	0	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1671	307	863	0	ENST00000575354.2:c.3347dupC	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110436227	110436227	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1394911868		P-0015812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	61	445	0	ENST00000375856.3:c.2174del	p.Gly725AlafsTer102	p.G725Afs*102	ENST00000375856	NM_003749.2	725	gGc/gc																																																																														
SPEN	0	MSKCC	GRCh37	1	16255141	16255142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0015812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	61	497	1	ENST00000375759.3:c.2417_2418dupGA	p.Arg807AspfsTer3	p.R807Dfs*3	ENST00000375759	NM_015001.2	802	-/GA																																																																														
ELF3	0	MSKCC	GRCh37	1	201980314	201980314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1617	164	783	2	ENST00000359651.3:c.50C>T	p.Ala17Val	p.A17V	ENST00000359651		17	gCg/gTg																																																																														
LMO1	0	MSKCC	GRCh37	11	8284909	8284909	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0015812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	73	492	2	ENST00000335790.3:c.1A>T	p.Met1?	p.M1?	ENST00000335790	NM_002315.2	1	Atg/Ttg																																																																														
MGA	0	MSKCC	GRCh37	15	42028815	42028815	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	54	584	1	ENST00000219905.7:c.4357del	p.Tyr1453MetfsTer27	p.Y1453Mfs*27	ENST00000219905	NM_001164273.1	1451	ccT/cc																																																																														
RARA	0	MSKCC	GRCh37	17	38504646	38504646	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	297	637	0	ENST00000254066.5:c.257A>C	p.Lys86Thr	p.K86T	ENST00000254066	NM_000964.3	86	aAg/aCg																																																																														
STK11	0	MSKCC	GRCh37	19	1207151	1207151	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	33	928	0	ENST00000326873.7:c.239T>G	p.Leu80Arg	p.L80R	ENST00000326873	NM_000455.4	80	cTc/cGc																																																																														
AGO2	0	MSKCC	GRCh37	8	141549439	141549439	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	75	269	0	ENST00000220592.5:c.2149T>C	p.Cys717Arg	p.C717R	ENST00000220592	NM_012154.3	717	Tgc/Cgc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81904434	81904507	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTCACTTTTTTCATATTTACAGGAAATAGGAGCACACAAAGATGAGCTCAGCTTTGAACAGTTCCATCTCTTC	GGTCACTTTTTTCATATTTACAGGAAATAGGAGCACACAAAGATGAGCTCAGCTTTGAACAGTTCCATCTCTTC	TTATGATTTTCATGT			P-0015812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	44	388	0	ENST00000359376.3:c.565-23_615delinsTTATGATTTTCATGT		p.X189_splice	ENST00000359376	NM_002661.3	189																																																																															
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	13	636	1	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266611	198266611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	30	467	0	ENST00000335508.6:c.2225G>A	p.Gly742Asp	p.G742D	ENST00000335508	NM_012433.2	742	gGt/gAt																																																																														
MEN1	0	MSKCC	GRCh37	11	64572186	64572186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	29	328	2	ENST00000337652.1:c.1468C>T	p.Arg490Trp	p.R490W	ENST00000337652	NM_130803.2	490	Cgg/Tgg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9775597	9775597	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	37	456	0	ENST00000377346.4:c.142-2A>G		p.X48_splice	ENST00000377346	NM_005026.3	48																																																																															
INPPL1	0	MSKCC	GRCh37	11	71943789	71943789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	76	773	3	ENST00000298229.2:c.1832G>A	p.Arg611His	p.R611H	ENST00000298229	NM_001567.3	611	cGc/cAc																																																																														
DIS3	0	MSKCC	GRCh37	13	73335546	73335546	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	29	474	0	ENST00000377767.4:c.2625del	p.Phe875LeufsTer22	p.F875Lfs*22	ENST00000377767	NM_014953.3	875	ttT/tt																																																																														
CYLD	0	MSKCC	GRCh37	16	50813674	50813674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	103	955	2	ENST00000398568.2:c.1228G>A	p.Glu410Lys	p.E410K	ENST00000398568	NM_001042412.1	410	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	259	505	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	441	761	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																														
WT1	0	MSKCC	GRCh37	11	32410650	32410650	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	291	503	0	ENST00000332351.3:c.1508A>T	p.His503Leu	p.H503L	ENST00000332351	NM_024426.4	503	cAc/cTc																																																																														
EED	0	MSKCC	GRCh37	11	85956294	85956294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	122	213	0	ENST00000263360.6:c.23C>T	p.Thr8Ile	p.T8I	ENST00000263360	NM_003797.3	8	aCt/aTt																																																																														
STK11	0	MSKCC	GRCh37	19	1221975	1221975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	380	660	0	ENST00000326873.7:c.890G>C	p.Arg297Thr	p.R297T	ENST00000326873	NM_000455.4	297	aGg/aCg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25498374	25498374	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	260	377	0	ENST00000264709.3:c.487A>T	p.Met163Leu	p.M163L	ENST00000264709	NM_175629.2	163	Atg/Ttg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981671	70981671	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1585	165	781	0	ENST00000276594.2:c.425del	p.Pro142ArgfsTer8	p.P142Rfs*8	ENST00000276594	NM_024504.3	142	cCg/cg																																																																														
TP53	0	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	42	626	1	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	383	627	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1215	283	712	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107135	27107136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	499	593	0	ENST00000324856.7:c.6747dupA	p.Glu2250ArgfsTer28	p.E2250Rfs*28	ENST00000324856	NM_006015.4	2249	tca/tcAa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1962801	1962801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	226	548	0	ENST00000382891.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000382891	NM_133335.3	1099	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578530	7578539	+	protein_altering_variant	In_Frame_Del	DEL	ACATCTTGTT	ACATCTTGTT	G			P-0015818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1205	359	1101	0	ENST00000269305.4:c.391_400delinsC	p.Asn131_Phe134delinsLeu	p.N131_F134delinsL	ENST00000269305	NM_001126112.2	131	AACAAGATGTtt/Ctt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481806	56481806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	160	614	0	ENST00000267101.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000267101	NM_001982.3	245	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	158	626	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0015820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	164	785	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	311	682	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	499	364	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1588	276	972	0	ENST00000269305.4:c.400T>A	p.Phe134Ile	p.F134I	ENST00000269305	NM_001126112.2	134	Ttt/Att																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	109	431	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	109	431	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412488	63412488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	187	817	0	ENST00000330258.3:c.679G>A	p.Glu227Lys	p.E227K	ENST00000330258	NM_152424.3	227	Gaa/Aaa																																																																														
FAT1	0	MSKCC	GRCh37	4	187630695	187630695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	360	587	0	ENST00000441802.2:c.287T>C	p.Leu96Pro	p.L96P	ENST00000441802	NM_005245.3	96	cTa/cCa																																																																														
IDH1	0	MSKCC	GRCh37	2	209113155	209113155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	120	401	0	ENST00000345146.2:c.352C>T	p.Pro118Ser	p.P118S	ENST00000345146	NM_005896.2	118	Ccc/Tcc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066550	94066550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	249	496	0	ENST00000369303.4:c.1209G>A	p.Met403Ile	p.M403I	ENST00000369303	NM_004440.3	403	atG/atA																																																																														
SPEN	0	MSKCC	GRCh37	1	16259165	16259165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	332	624	0	ENST00000375759.3:c.6430C>T	p.Pro2144Ser	p.P2144S	ENST00000375759	NM_015001.2	2144	Cca/Tca																																																																														
MYCL1	0	MSKCC	GRCh37	1	40363517	40363517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	135	600	0	ENST00000397332.2:c.712C>T	p.His238Tyr	p.H238Y	ENST00000397332	NM_001033082.2	238	Cat/Tat																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120465361	120465361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	178	556	0	ENST00000256646.2:c.4900C>T	p.Gln1634Ter	p.Q1634*	ENST00000256646	NM_024408.3	1634	Caa/Taa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120510721	120510721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	393	689	0	ENST00000256646.2:c.1243G>A	p.Asp415Asn	p.D415N	ENST00000256646	NM_024408.3	415	Gat/Aat																																																																														
DDR2	0	MSKCC	GRCh37	1	162731157	162731157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	345	453	0	ENST00000367921.3:c.1012C>T	p.Leu338Phe	p.L338F	ENST00000367921	NM_006182.2	338	Ctc/Ttc																																																																														
LMO1	0	MSKCC	GRCh37	11	8248570	8248589	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCGGGCCCGCATCACCAT	TCCCGGGCCCGCATCACCAT	-			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	149	734	0	ENST00000335790.3:c.298_317del	p.Met100GlnfsTer37	p.M100Qfs*37	ENST00000335790	NM_002315.2	100	ATGGTGATGCGGGCCCGGGAc/c																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870930	12870930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	98	347	0	ENST00000228872.4:c.157G>A	p.Glu53Lys	p.E53K	ENST00000228872	NM_004064.3	53	Gaa/Aaa																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856527	111856527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	180	365	0	ENST00000341259.2:c.578C>T	p.Pro193Leu	p.P193L	ENST00000341259	NM_005475.2	193	cCc/cTc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121435375	121435376	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	349	769	0	ENST00000257555.6:c.1408_1409insG	p.Pro470ArgfsTer79	p.P470Rfs*79	ENST00000257555		470	ccc/cGcc																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578371	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TA			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	207	454	0	ENST00000269305.4:c.559_559+1delinsTA		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
FLCN	0	MSKCC	GRCh37	17	17122401	17122401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	290	621	0	ENST00000285071.4:c.994C>T	p.Leu332Phe	p.L332F	ENST00000285071	NM_144997.5	332	Ctc/Ttc																																																																														
NF1	0	MSKCC	GRCh37	17	29684020	29684020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	395	737	1	ENST00000358273.4:c.7781G>A	p.Arg2594His	p.R2594H	ENST00000358273	NM_001042492.2	2594	cGt/cAt																																																																														
STAT5A	0	MSKCC	GRCh37	17	40461481	40461481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	403	944	1	ENST00000345506.4:c.2201C>T	p.Pro734Leu	p.P734L	ENST00000345506	NM_003152.3	734	cCc/cTc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5208058	5208058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139519201		P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	223	400	0	ENST00000357368.4:c.5653G>A	p.Gly1885Ser	p.G1885S	ENST00000357368	NM_002850.3	1885	Ggc/Agc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5243965	5243965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	167	589	0	ENST00000357368.4:c.1517C>T	p.Ser506Phe	p.S506F	ENST00000357368	NM_002850.3	506	tCc/tTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210696	36210697	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	160	707	4	ENST00000222270.7:c.447_448delinsTT	p.Arg150Ter	p.R150*	ENST00000222270	NM_014727.1	149	ccCCga/ccTTga																																																																														
ALK	0	MSKCC	GRCh37	2	29443669	29443669	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	377	654	0	ENST00000389048.3:c.3548T>A	p.Ile1183Asn	p.I1183N	ENST00000389048	NM_004304.4	1183	aTt/aAt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022435	31022437	+	frameshift_variant	Frame_Shift_Del	DEL	CAT	CAT	TA			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	125	197	0	ENST00000375687.4:c.1920_1922delinsTA	p.Ile641ThrfsTer62	p.I641Tfs*62	ENST00000375687	NM_015338.5	640	gcCATc/gcTAc																																																																														
TET2	0	MSKCC	GRCh37	4	106156729	106156729	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	297	473	0	ENST00000380013.4:c.1630C>G	p.Arg544Gly	p.R544G	ENST00000380013	NM_001127208.2	544	Cga/Gga																																																																														
RAD50	0	MSKCC	GRCh37	5	131927054	131927071	+	inframe_deletion	In_Frame_Del	DEL	CATACAACAACACGTACC	CATACAACAACACGTACC	-			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	205	535	0	ENST00000265335.6:c.1593_1610del	p.His531_Thr536del	p.H531_T536del	ENST00000265335		531	CATACAACAACACGTACC/-																																																																														
AGO2	0	MSKCC	GRCh37	8	141554398	141554398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1393	209	766	0	ENST00000220592.5:c.1753C>T	p.Pro585Ser	p.P585S	ENST00000220592	NM_012154.3	585	Ccg/Tcg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974675	21974675	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	287	455	0	ENST00000304494.5:c.150+2T>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
TEK	0	MSKCC	GRCh37	9	27173259	27173259	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1460	163	698	0	ENST00000380036.4:c.800G>C	p.Arg267Thr	p.R267T	ENST00000380036	NM_000459.3	267	aGg/aCg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396263	139396263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	255	811	1	ENST00000277541.6:c.5575G>A	p.Ala1859Thr	p.A1859T	ENST00000277541	NM_017617.3	1859	Gcc/Acc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139411723	139411723	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	351	751	0	ENST00000277541.6:c.1555+1G>A		p.X519_splice	ENST00000277541	NM_017617.3	519																																																																															
NOTCH1	0	MSKCC	GRCh37	9	139413085	139413086	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	177	628	3	ENST00000277541.6:c.1056_1057delinsTT	p.Arg353Cys	p.R353C	ENST00000277541	NM_017617.3	352	gaCCgt/gaTTgt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413103	139413103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	223	694	1	ENST00000277541.6:c.1039G>T	p.Gly347Cys	p.G347C	ENST00000277541	NM_017617.3	347	Ggc/Tgc																																																																														
PARK2	0	MSKCC	GRCh37	6	162683677	162683678	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0015821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	279	520	0	ENST00000366898.1:c.291_292delinsA	p.Glu98SerfsTer5	p.E98Sfs*5	ENST00000366898	NM_004562.2	97	cgGGag/cgAag																																																																														
BCOR	0	MSKCC	GRCh37	X	39923699	39923699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	92	692	1	ENST00000378444.4:c.3392G>T	p.Arg1131Leu	p.R1131L	ENST00000378444	NM_001123385.1	1131	cGg/cTg																																																																														
CARD11	0	MSKCC	GRCh37	7	2987353	2987353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	296	588	0	ENST00000396946.4:c.76G>T	p.Val26Leu	p.V26L	ENST00000396946	NM_032415.4	26	Gtg/Ttg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32931931	32931934	+	frameshift_variant	Frame_Shift_Ins	INS	CAGA	CAGA	TCTGCATTTTTAACAGCAAAAAT			P-0015828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	90	380	0	ENST00000380152.3:c.7670_7673delinsTCTGCATTTTTAACAGCAAAAAT	p.Ala2557ValfsTer15	p.A2557Vfs*15	ENST00000380152		2557	gCAGAg/gTCTGCATTTTTAACAGCAAAAATg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	176	670	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0015829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	210	812	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
STAG2	0	MSKCC	GRCh37	X	123205102	123205102	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	102	725	0	ENST00000218089.9:c.2462T>G	p.Leu821Trp	p.L821W	ENST00000218089	NM_001042749.1	821	tTg/tGg																																																																														
FLCN	0	MSKCC	GRCh37	17	17119784	17119784	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	572	870	0	ENST00000285071.4:c.1210C>G	p.Pro404Ala	p.P404A	ENST00000285071	NM_144997.5	404	Cca/Gca																																																																														
CARD11	0	MSKCC	GRCh37	7	2953050	2953050	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	242	973	1	ENST00000396946.4:c.2890A>G	p.Ser964Gly	p.S964G	ENST00000396946	NM_032415.4	964	Agc/Ggc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509237	106509237	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1224	188	773	0	ENST00000359195.3:c.1231A>C	p.Asn411His	p.N411H	ENST00000359195	NM_002649.2	411	Aat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	784	573	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
SPEN	0	MSKCC	GRCh37	1	16242685	16242685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2037	300	717	0	ENST00000375759.3:c.1306G>A	p.Ala436Thr	p.A436T	ENST00000375759	NM_015001.2	436	Gca/Aca																																																																														
RAF1	0	MSKCC	GRCh37	3	12660192	12660192	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144637992		P-0015833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	248	604	0	ENST00000251849.4:c.29C>T	p.Thr10Met	p.T10M	ENST00000251849	NM_002880.3	10	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	41	868	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	41	337	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41222997	41222997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	55	986	0	ENST00000357654.3:c.4934G>A	p.Arg1645Lys	p.R1645K	ENST00000357654	NM_007294.3	1645	aGg/aAg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554545	63554545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	31	609	0	ENST00000307078.5:c.194C>T	p.Pro65Leu	p.P65L	ENST00000307078	NM_004655.3	65	cCg/cTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151848013	151848013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	29	425	0	ENST00000262189.6:c.12746C>A	p.Thr4249Asn	p.T4249N	ENST00000262189	NM_170606.2	4249	aCt/aAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692820	89692820	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4	17	333	0	ENST00000371953.3:c.306delA	p.Lys102AsnfsTer11	p.K102Nfs*11	ENST00000371953	NM_000314.4	102	Aaa/aa																																																																														
ETV6	0	MSKCC	GRCh37	12	12038878	12038878	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	34	590	0	ENST00000396373.4:c.1171T>G	p.Tyr391Asp	p.Y391D	ENST00000396373	NM_001987.4	391	Tat/Gat																																																																														
MGA	0	MSKCC	GRCh37	15	42054498	42054498	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	13	656	1	ENST00000219905.7:c.7682T>A	p.Met2561Lys	p.M2561K	ENST00000219905	NM_001164273.1	2561	aTg/aAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	320	829	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	32	552	0	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	224	892	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
TBX3	0	MSKCC	GRCh37	12	115118713	115118713	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	46	669	0	ENST00000257566.3:c.628A>G	p.Thr210Ala	p.T210A	ENST00000257566	NM_016569.3	210	Acc/Gcc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913920	32913920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	133	738	1	ENST00000380152.3:c.5428G>A	p.Val1810Ile	p.V1810I	ENST00000380152		1810	Gtt/Att																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060989	38060990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGGGGG			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	67	371	1	ENST00000250448.2:c.993_999dup	p.Thr334ProfsTer83	p.T334Pfs*83	ENST00000250448	NM_004496.3	333	-/CCCCCAG																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829314	72829314	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	47	755	0	ENST00000268489.5:c.7267del	p.Thr2423GlnfsTer105	p.T2423Qfs*105	ENST00000268489	NM_006885.3	2423	Aca/ca																																																																														
CARM1	0	MSKCC	GRCh37	19	11032336	11032336	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	155	851	0	ENST00000327064.4:c.1730A>C	p.His577Pro	p.H577P	ENST00000327064	NM_199141.1	577	cAc/cCc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273869	18273869	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	225	1014	0	ENST00000222254.8:c.1202T>G	p.Leu401Arg	p.L401R	ENST00000222254	NM_005027.3	401	cTc/cGc																																																																														
MLH1	0	MSKCC	GRCh37	3	37038181	37038181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	84	467	0	ENST00000231790.2:c.188A>G	p.Asp63Gly	p.D63G	ENST00000231790	NM_000249.3	63	gAc/gGc																																																																														
MED12	0	MSKCC	GRCh37	X	70356477	70356477	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	40	573	1	ENST00000374080.3:c.5372A>G	p.Lys1791Arg	p.K1791R	ENST00000374080		1791	aAa/aGa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692775	89692775	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	114	440	0	ENST00000371953.3:c.259C>T	p.Gln87Ter	p.Q87*	ENST00000371953	NM_000314.4	87	Caa/Taa																																																																														
IRS1	0	MSKCC	GRCh37	2	227662481	227662481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	76	537	0	ENST00000305123.5:c.974G>A	p.Arg325His	p.R325H	ENST00000305123	NM_005544.2	325	cGt/cAt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584583	52584583	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	128	842	2	ENST00000394830.3:c.4430del	p.Pro1477LeufsTer12	p.P1477Lfs*12	ENST00000394830	NM_018313.4	1477	cCt/ct																																																																														
PGR	0	MSKCC	GRCh37	11	100998824	100998824	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	89	971	0	ENST00000325455.5:c.978C>G	p.Asp326Glu	p.D326E	ENST00000325455	NM_001202474.3	326	gaC/gaG																																																																														
TBX3	0	MSKCC	GRCh37	12	115110015	115110015	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	111	1172	1	ENST00000257566.3:c.1863C>A	p.Ser621Arg	p.S621R	ENST00000257566	NM_016569.3	621	agC/agA																																																																														
NF1	0	MSKCC	GRCh37	17	29556119	29556119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	46	177	0	ENST00000358273.4:c.2486C>G	p.Ser829Cys	p.S829C	ENST00000358273	NM_001042492.2	829	tCt/tGt																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31376685	31376685	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	60	557	0	ENST00000328111.2:c.680A>G	p.Asp227Gly	p.D227G	ENST00000328111	NM_006892.3	227	gAc/gGc																																																																														
EIF4E	0	MSKCC	GRCh37	4	99823067	99823067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	83	530	0	ENST00000280892.6:c.145G>C	p.Ala49Pro	p.A49P	ENST00000280892	NM_001130678.1	49	Gct/Cct																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738750	145738750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	162	1193	1	ENST00000428558.2:c.2314G>A	p.Val772Met	p.V772M	ENST00000428558	NM_004260.3	772	Gtg/Atg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	241	866	0	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																														
ATM	0	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0015843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	79	533	2	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0015843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	346	1081	1	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	18	519	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950588	38950588	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	30	569	0	ENST00000357387.3:c.3362C>G	p.Ser1121Ter	p.S1121*	ENST00000357387	NM_152756.3	1121	tCa/tGa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56170926	56170926	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	26	334	0	ENST00000399503.3:c.1755del	p.Arg585SerfsTer71	p.R585Sfs*71	ENST00000399503	NM_005921.1	585	aGg/ag																																																																														
XIAP	0	MSKCC	GRCh37	X	123020240	123020240	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	65	654	0	ENST00000355640.3:c.728C>G	p.Ala243Gly	p.A243G	ENST00000355640		243	gCt/gGt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	23	552	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	192	443	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	170	449	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	144	421	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	151	398	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	135	426	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	126	391	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	98	285	0	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851104	63851104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148232588		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	217	498	0	ENST00000279873.7:c.1882G>A	p.Val628Met	p.V628M	ENST00000279873	NM_032199.2	628	Gtg/Atg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	243	777	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
PARP1	0	MSKCC	GRCh37	1	226573330	226573330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	176	474	1	ENST00000366794.5:c.886G>A	p.Glu296Lys	p.E296K	ENST00000366794	NM_001618.3	296	Gag/Aag																																																																														
LATS2	0	MSKCC	GRCh37	13	21563021	21563021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	252	696	2	ENST00000382592.4:c.898G>A	p.Ala300Thr	p.A300T	ENST00000382592	NM_014572.2	300	Gcc/Acc																																																																														
SOX9	0	MSKCC	GRCh37	17	70119050	70119050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	203	496	0	ENST00000245479.2:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000245479	NM_000346.3	208	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	42	549	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
MTOR	0	MSKCC	GRCh37	1	11210203	11210203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	438	492	0	ENST00000361445.4:c.4550C>T	p.Ala1517Val	p.A1517V	ENST00000361445	NM_004958.3	1517	gCt/gTt																																																																														
CASP8	0	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	140	322	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																														
CBFB	865	MSKCC	GRCh37	16	67063359	67063359	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	194	457	1	ENST00000412916.2:c.54del	p.Phe18LeufsTer4	p.F18Lfs*4	ENST00000412916		17	Ttt/tt																																																																														
NF1	0	MSKCC	GRCh37	17	29654856	29654856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	75	206	0	ENST00000358273.4:c.5608C>T	p.Arg1870Trp	p.R1870W	ENST00000358273	NM_001042492.2	1870	Cgg/Tgg																																																																														
MGA	0	MSKCC	GRCh37	15	42052633	42052633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	221	466	1	ENST00000219905.7:c.7304G>A	p.Arg2435Gln	p.R2435Q	ENST00000219905	NM_001164273.1	2435	cGg/cAg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925317	114925318	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	76	402	0	ENST00000543371.1:c.1402_1403del	p.Lys468ValfsTer8	p.K468Vfs*8	ENST00000543371	NM_001198531.1	465	agAAaa/agaa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	294	739	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843515	156843515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	232	549	0	ENST00000524377.1:c.941G>A	p.Arg314His	p.R314H	ENST00000524377	NM_002529.3	314	cGc/cAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8100762	8100762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	174	656	2	ENST00000346208.3:c.736G>A	p.Gly246Ser	p.G246S	ENST00000346208		246	Ggc/Agc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118371775	118371775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	152	380	0	ENST00000534358.1:c.6232C>T	p.Arg2078Cys	p.R2078C	ENST00000534358	NM_005933.3	2078	Cgt/Tgt																																																																														
TRAF7	0	MSKCC	GRCh37	16	2224304	2224304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	288	692	0	ENST00000326181.6:c.1316A>G	p.Asp439Gly	p.D439G	ENST00000326181	NM_032271.2	439	gAt/gGt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214675	5214675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	293	684	0	ENST00000357368.4:c.4391C>T	p.Thr1464Met	p.T1464M	ENST00000357368	NM_002850.3	1464	aCg/aTg																																																																														
AXL	0	MSKCC	GRCh37	19	41737096	41737096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	64	688	1	ENST00000301178.4:c.676C>A	p.Gln226Lys	p.Q226K	ENST00000301178	NM_021913.4	226	Cag/Aag																																																																														
MSH2	0	MSKCC	GRCh37	2	47690273	47690273	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	140	448	0	ENST00000233146.2:c.1490T>C	p.Ile497Thr	p.I497T	ENST00000233146	NM_000251.2	497	aTa/aCa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62320897	62320897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	271	794	0	ENST00000508582.2:c.1993G>A	p.Val665Met	p.V665M	ENST00000508582		665	Gtg/Atg																																																																														
MLH1	0	MSKCC	GRCh37	3	37090393	37090393	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	158	377	0	ENST00000231790.2:c.1990-2A>G		p.X664_splice	ENST00000231790	NM_000249.3	664																																																																															
TP63	0	MSKCC	GRCh37	3	189607255	189607255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	70	660	0	ENST00000264731.3:c.1634C>T	p.Thr545Ile	p.T545I	ENST00000264731	NM_003722.4	545	aCa/aTa																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519339	137519340	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	66	242	0	ENST00000367739.4:c.1298dup	p.Asn433LysfsTer2	p.N433Kfs*2	ENST00000367739	NM_000416.2	433	aat/aaAt																																																																														
EGFR	0	MSKCC	GRCh37	7	55240767	55240767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	247	701	0	ENST00000275493.2:c.2011C>T	p.Arg671Cys	p.R671C	ENST00000275493	NM_005228.3	671	Cgc/Tgc																																																																														
PREX2	0	MSKCC	GRCh37	8	69058536	69058536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753703		P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	183	604	0	ENST00000288368.4:c.4180C>T	p.Arg1394Trp	p.R1394W	ENST00000288368	NM_024870.2	1394	Cgg/Tgg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400044	139400044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	269	714	0	ENST00000277541.6:c.4304G>T	p.Gly1435Val	p.G1435V	ENST00000277541	NM_017617.3	1435	gGg/gTg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	239	392	1	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934603	9934603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	50	474	2	ENST00000330684.3:c.1552C>T	p.Arg518Cys	p.R518C	ENST00000330684	NM_001134407.1	518	Cgt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108175413	108175413	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	160	228	0	ENST00000278616.4:c.5508del	p.Cys1838ValfsTer8	p.C1838Vfs*8	ENST00000278616	NM_000051.3	1836	gaC/ga																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	203	595	0	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	150	530	0				ENST00000310581	NM_198253.2																																																																																
BAP1	0	MSKCC	GRCh37	3	52439874	52439874	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	245	935	0	ENST00000460680.1:c.838C>T	p.Gln280Ter	p.Q280*	ENST00000460680	NM_004656.3	280	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023253	27023268	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCGGCGGCGGCGG	CGCCCGGCGGCGGCGG	-			P-0015853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	308	406	0	ENST00000324856.7:c.359_374del	p.Pro120LeufsTer107	p.P120Lfs*107	ENST00000324856	NM_006015.4	120	cCGCCCGGCGGCGGCGGt/ct																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165632	118165632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	170	621	0	ENST00000369448.3:c.142C>A	p.Leu48Met	p.L48M	ENST00000369448	NM_017709.3	48	Ctg/Atg																																																																														
IKBKE	0	MSKCC	GRCh37	1	206651118	206651118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	561	1171	1	ENST00000367120.3:c.728C>A	p.Ala243Asp	p.A243D	ENST00000367120	NM_014002.3	243	gCt/gAt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914689	32914689	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	208	845	0	ENST00000380152.3:c.6197T>G	p.Val2066Gly	p.V2066G	ENST00000380152		2066	gTt/gGt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412218	139412218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	279	1077	1	ENST00000277541.6:c.1427G>T	p.Cys476Phe	p.C476F	ENST00000277541	NM_017617.3	476	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	36	530	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974734	21974753	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCGCCCGCACCTCCTCTA	CAGCGCCCGCACCTCCTCTA	-			P-0015857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	31	320	0	ENST00000304494.5:c.74_93del	p.Val25AlafsTer12	p.V25Afs*12	ENST00000304494	NM_000077.4	25	gTAGAGGAGGTGCGGGCGCTG/g																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974734	21974753	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCGCCCGCACCTCCTCTA	CAGCGCCCGCACCTCCTCTA	-			P-0015857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	31	320	0	ENST00000304494.5:c.74_93del	p.Val25AlafsTer12	p.V25Afs*12	ENST00000304494	NM_000077.4	25	gTAGAGGAGGTGCGGGCGCTG/g																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916644	178916665	+	protein_altering_variant	In_Frame_Del	DEL	TGGGGCATCCACTTGATGCCCC	TGGGGCATCCACTTGATGCCCC	GGGG			P-0015861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	58	346	2	ENST00000263967.3:c.31_52delinsGGGG	p.Trp11_Pro18delinsGlyAla	p.W11_P18delinsGA	ENST00000263967	NM_006218.2	11	TGGGGCATCCACTTGATGCCCCca/GGGGca																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	341	513	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
STK11	0	MSKCC	GRCh37	19	1220679	1220679	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	288	729	0	ENST00000326873.7:c.698del	p.Gly233AlafsTer54	p.G233Afs*54	ENST00000326873	NM_000455.4	233	Ggc/gc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602292	10602292	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	317	642	0	ENST00000171111.5:c.1286G>T	p.Gly429Val	p.G429V	ENST00000171111	NM_203500.1	429	gGc/gTc																																																																														
JAK3	0	MSKCC	GRCh37	19	17949085	17949085	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	248	661	0	ENST00000458235.1:c.1556A>G	p.Asp519Gly	p.D519G	ENST00000458235	NM_000215.3	519	gAc/gGc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55138589	55138589	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	136	563	0	ENST00000257290.5:c.1266T>A	p.Asp422Glu	p.D422E	ENST00000257290	NM_006206.4	422	gaT/gaA																																																																														
APC	0	MSKCC	GRCh37	5	112174736	112174736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	119	325	0	ENST00000257430.4:c.3445G>T	p.Glu1149Ter	p.E1149*	ENST00000257430	NM_000038.5	1149	Gaa/Taa																																																																														
PARK2	0	MSKCC	GRCh37	6	162864478	162864478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	127	467	0	ENST00000366898.1:c.35G>C	p.Gly12Ala	p.G12A	ENST00000366898	NM_004562.2	12	gGt/gCt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808594	1808594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	564	741	0	ENST00000260795.2:c.2207C>T	p.Ser736Phe	p.S736F	ENST00000260795		736	tCc/tTc																																																																														
IL7R	0	MSKCC	GRCh37	5	35857082	35857082	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0015863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	151	219	0	ENST00000303115.3:c.3G>A	p.Met1?	p.M1?	ENST00000303115	NM_002185.3	1	atG/atA																																																																														
IL7R	3575	MSKCC	GRCh37	5	35857138	35857138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	116	212	0	ENST00000303115.3:c.59G>A	p.Gly20Glu	p.G20E	ENST00000303115	NM_002185.3	20	gGa/gAa																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652063	36652064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	1055	658	0	ENST00000244741.5:c.186dup	p.Phe63LeufsTer26	p.F63Lfs*26	ENST00000244741	NM_000389.4	62	gac/gaCc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16049691	16049691	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0015865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	169	410	0	ENST00000268712.3:c.1081C>T	p.Arg361Ter	p.R361*	ENST00000268712	NM_006311.3	361	Cga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187557322	187557322	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	247	718	0	ENST00000441802.2:c.4040C>G	p.Ser1347Cys	p.S1347C	ENST00000441802	NM_005245.3	1347	tCc/tGc																																																																														
SDHA	0	MSKCC	GRCh37	5	251536	251536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	132	498	0	ENST00000264932.6:c.1747G>A	p.Glu583Lys	p.E583K	ENST00000264932	NM_004168.2	583	Gag/Aag																																																																														
TERT	0	MSKCC	GRCh37	5	1254507	1254507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	412	858	0	ENST00000310581.5:c.3271C>T	p.Pro1091Ser	p.P1091S	ENST00000310581	NM_198253.2	1091	Cca/Tca																																																																														
BRAF	0	MSKCC	GRCh37	7	140482877	140482877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	327	666	1	ENST00000288602.6:c.1258C>A	p.Pro420Thr	p.P420T	ENST00000288602	NM_004333.4	420	Cca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	385	507	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0015867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	209	574	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	193	600	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	172	603	0	ENST00000269305.4:c.695T>G	p.Ile232Ser	p.I232S	ENST00000269305	NM_001126112.2	232	aTc/aGc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873401	151873401	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	179	307	0	ENST00000262189.6:c.9137T>G	p.Leu3046Arg	p.L3046R	ENST00000262189	NM_170606.2	3046	cTt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	23	767	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	38	394	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	31	373	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589168	67589168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	16	283	0	ENST00000274335.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000274335		386	Cga/Tga																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259477	89259477	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200567888		P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	33	392	0	ENST00000336596.2:c.621G>T	p.Lys207Asn	p.K207N	ENST00000336596	NM_005233.5	207	aaG/aaT																																																																														
JAK2	0	MSKCC	GRCh37	9	5126730	5126730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	62	405	0	ENST00000381652.3:c.3338G>A	p.Arg1113His	p.R1113H	ENST00000381652	NM_004972.3	1113	cGc/cAc																																																																														
PTPN11	0	MSKCC	GRCh37	12	112891035	112891035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	21	322	0	ENST00000351677.2:c.369G>T	p.Glu123Asp	p.E123D	ENST00000351677	NM_002834.3	123	gaG/gaT																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716212	52716212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	42	385	0	ENST00000322088.6:c.656C>T	p.Ser219Leu	p.S219L	ENST00000322088	NM_014225.5	219	tCg/tTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089730	27089730	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	42	587	0	ENST00000324856.7:c.2686G>T	p.Glu896Ter	p.E896*	ENST00000324856	NM_006015.4	896	Gaa/Taa																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138413662	138413662	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	53	474	0	ENST00000289153.2:c.1858C>T	p.Arg620Ter	p.R620*	ENST00000289153	NM_006219.2	620	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1249	67	860	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG																																																																														
TP53	0	MSKCC	GRCh37	17	7577073	7577073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	55	630	0	ENST00000269305.4:c.865C>T	p.Leu289Phe	p.L289F	ENST00000269305	NM_001126112.2	289	Ctc/Ttc																																																																														
NF1	0	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	20	290	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	35	420	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																														
JAK1	0	MSKCC	GRCh37	1	65332628	65332628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	27	332	1	ENST00000342505.4:c.911C>T	p.Ser304Leu	p.S304L	ENST00000342505	NM_002227.2	304	tCg/tTg																																																																														
AR	0	MSKCC	GRCh37	X	66937442	66937442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	49	549	2	ENST00000374690.3:c.2296G>A	p.Ala766Thr	p.A766T	ENST00000374690	NM_000044.3	766	Gcc/Acc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913023	32913023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	39	590	0	ENST00000380152.3:c.4531G>A	p.Glu1511Lys	p.E1511K	ENST00000380152		1511	Gaa/Aaa																																																																														
BARD1	0	MSKCC	GRCh37	2	215645665	215645665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	35	368	0	ENST00000260947.4:c.933G>T	p.Lys311Asn	p.K311N	ENST00000260947	NM_000465.2	311	aaG/aaT																																																																														
TP63	8626	MSKCC	GRCh37	3	189584500	189584500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	21	378	1	ENST00000264731.3:c.796C>T	p.Arg266Ter	p.R266*	ENST00000264731	NM_003722.4	266	Cga/Tga																																																																														
RASA1	0	MSKCC	GRCh37	5	86629147	86629147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	26	324	0	ENST00000274376.6:c.892G>T	p.Glu298Ter	p.E298*	ENST00000274376	NM_002890.2	298	Gaa/Taa																																																																														
ATM	0	MSKCC	GRCh37	11	108216568	108216568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	24	319	1	ENST00000278616.4:c.8517C>A	p.Phe2839Leu	p.F2839L	ENST00000278616	NM_000051.3	2839	ttC/ttA																																																																														
CHEK2	0	MSKCC	GRCh37	22	29090089	29090089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	23	157	0	ENST00000328354.6:c.1392G>T	p.Lys464Asn	p.K464N	ENST00000328354	NM_007194.3	464	aaG/aaT																																																																														
MTOR	0	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	35	382	0	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198263220	198263220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	36	440	0	ENST00000335508.6:c.3099G>T	p.Glu1033Asp	p.E1033D	ENST00000335508	NM_012433.2	1033	gaG/gaT																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201816	66201816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	31	388	0	ENST00000273854.3:c.2686C>T	p.Arg896Cys	p.R896C	ENST00000273854	NM_004439.5	896	Cgt/Tgt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098800	178098800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	47	554	0	ENST00000397062.3:c.245A>G	p.Glu82Gly	p.E82G	ENST00000397062	NM_006164.4	82	gAa/gGa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934887	9934887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	42	558	1	ENST00000330684.3:c.1403C>T	p.Ser468Phe	p.S468F	ENST00000330684	NM_001134407.1	468	tCc/tTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187542861	187542861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	19	366	0	ENST00000441802.2:c.4879C>T	p.Arg1627Ter	p.R1627*	ENST00000441802	NM_005245.3	1627	Cga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	48942686	48942686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	23	292	0	ENST00000267163.4:c.1073G>A	p.Arg358Gln	p.R358Q	ENST00000267163	NM_000321.2	358	cGa/cAa																																																																														
MLH1	0	MSKCC	GRCh37	3	37056036	37056036	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	33	386	1	ENST00000231790.2:c.790+1G>A		p.X264_splice	ENST00000231790	NM_000249.3	264																																																																															
EPHB1	0	MSKCC	GRCh37	3	134851574	134851574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	31	457	0	ENST00000398015.3:c.980G>A	p.Arg327His	p.R327H	ENST00000398015	NM_004441.4	327	cGc/cAc																																																																														
RASA1	0	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	34	404	0	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa																																																																														
CASP8	0	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	41	548	1	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa																																																																														
MSH6	0	MSKCC	GRCh37	2	48027661	48027661	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	21	271	0	ENST00000234420.5:c.2539G>T	p.Glu847Ter	p.E847*	ENST00000234420	NM_000179.2	847	Gaa/Taa																																																																														
POLE	0	MSKCC	GRCh37	12	133249857	133249857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	29	348	0	ENST00000320574.5:c.1366G>C	p.Ala456Pro	p.A456P	ENST00000320574	NM_006231.2	456	Gcc/Ccc																																																																														
FAT1	0	MSKCC	GRCh37	4	187584747	187584747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	27	393	0	ENST00000441802.2:c.3286C>T	p.Arg1096Ter	p.R1096*	ENST00000441802	NM_005245.3	1096	Cga/Tga																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463578	25463578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	49	463	1	ENST00000264709.3:c.2104G>A	p.Asp702Asn	p.D702N	ENST00000264709	NM_175629.2	702	Gat/Aat																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281660	49281660	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61735175		P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	58	667	2	ENST00000282018.3:c.707C>T	p.Ser236Leu	p.S236L	ENST00000282018	NM_020377.2	236	tCg/tTg																																																																														
NEGR1	0	MSKCC	GRCh37	1	72748117	72748117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	34	455	0	ENST00000357731.5:c.61C>T	p.Leu21Phe	p.L21F	ENST00000357731	NM_173808.2	21	Ctc/Ttc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78429846	78429846	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	17	254	0	ENST00000370768.2:c.942T>G	p.Asp314Glu	p.D314E	ENST00000370768	NM_003902.3	314	gaT/gaG																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120502047	120502047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189684879		P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	33	419	1	ENST00000256646.2:c.1994G>A	p.Arg665His	p.R665H	ENST00000256646	NM_024408.3	665	cGc/cAc																																																																														
DDR2	0	MSKCC	GRCh37	1	162724565	162724565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	63	527	0	ENST00000367921.3:c.337G>A	p.Glu113Lys	p.E113K	ENST00000367921	NM_006182.2	113	Gag/Aag																																																																														
MDM4	0	MSKCC	GRCh37	1	204518514	204518514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	26	304	0	ENST00000367182.3:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000367182	NM_001278516.1	393	Gaa/Aaa																																																																														
ARID5B	0	MSKCC	GRCh37	10	63759904	63759904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	35	297	0	ENST00000279873.7:c.557G>A	p.Arg186Gln	p.R186Q	ENST00000279873	NM_032199.2	186	cGg/cAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89717774	89717774	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	22	345	0	ENST00000371953.3:c.799A>T	p.Lys267Ter	p.K267*	ENST00000371953	NM_000314.4	267	Aag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89720871	89720871	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	22	348	0	ENST00000371953.3:c.1022T>G	p.Phe341Cys	p.F341C	ENST00000371953	NM_000314.4	341	tTt/tGt																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64128989	64128989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	59	590	2	ENST00000334205.4:c.619G>A	p.Glu207Lys	p.E207K	ENST00000334205	NM_003942.2	207	Gaa/Aaa																																																																														
ATM	0	MSKCC	GRCh37	11	108172502	108172502	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	26	333	0	ENST00000278616.4:c.5305A>T	p.Thr1769Ser	p.T1769S	ENST00000278616	NM_000051.3	1769	Aca/Tca																																																																														
CBL	0	MSKCC	GRCh37	11	119103196	119103196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	41	525	0	ENST00000264033.4:c.234G>T	p.Lys78Asn	p.K78N	ENST00000264033	NM_005188.3	78	aaG/aaT																																																																														
CBL	0	MSKCC	GRCh37	11	119158563	119158563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	34	499	0	ENST00000264033.4:c.1943G>T	p.Ser648Ile	p.S648I	ENST00000264033	NM_005188.3	648	aGt/aTt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435052	18435052	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	27	325	2	ENST00000266497.5:c.37G>T	p.Glu13Ter	p.E13*	ENST00000266497		13	Gaa/Taa																																																																														
ARID2	0	MSKCC	GRCh37	12	46231418	46231418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	36	409	0	ENST00000334344.6:c.1258G>A	p.Glu420Lys	p.E420K	ENST00000334344	NM_152641.2	420	Gag/Aag																																																																														
GLI1	0	MSKCC	GRCh37	12	57861224	57861224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	49	514	1	ENST00000228682.2:c.1021G>A	p.Ala341Thr	p.A341T	ENST00000228682	NM_005269.2	341	Gcc/Acc																																																																														
GLI1	0	MSKCC	GRCh37	12	57864550	57864550	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs200775132		P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	74	705	0	ENST00000228682.2:c.2027T>G	p.Phe676Cys	p.F676C	ENST00000228682	NM_005269.2	676	tTt/tGt																																																																														
RAB35	0	MSKCC	GRCh37	12	120554412	120554412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	22	201	0	ENST00000229340.5:c.43G>A	p.Gly15Ser	p.G15S	ENST00000229340	NM_006861.6	15	Ggc/Agc																																																																														
FLT1	0	MSKCC	GRCh37	13	28886159	28886159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	33	443	1	ENST00000282397.4:c.3463G>T	p.Gly1155Cys	p.G1155C	ENST00000282397	NM_002019.4	1155	Ggt/Tgt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972663	32972663	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	40	433	0	ENST00000380152.3:c.10013C>A	p.Ser3338Ter	p.S3338*	ENST00000380152		3338	tCa/tAa																																																																														
RB1	0	MSKCC	GRCh37	13	49027158	49027158	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	37	421	0	ENST00000267163.4:c.1725A>C	p.Gln575His	p.Q575H	ENST00000267163	NM_000321.2	575	caA/caC																																																																														
ERCC5	0	MSKCC	GRCh37	13	103528224	103528224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	45	402	0	ENST00000355739.4:c.3532C>T	p.Arg1178Cys	p.R1178C	ENST00000355739	NM_000123.3	1178	Cgt/Tgt																																																																														
PRKD1	0	MSKCC	GRCh37	14	30100175	30100175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	50	513	0	ENST00000331968.5:c.1445T>C	p.Leu482Ser	p.L482S	ENST00000331968	NM_002742.2	482	tTa/tCa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30100208	30100208	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	34	363	0	ENST00000331968.5:c.1412T>G	p.Ile471Ser	p.I471S	ENST00000331968	NM_002742.2	471	aTt/aGt																																																																														
RAD51B	0	MSKCC	GRCh37	14	68290283	68290283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	25	380	1	ENST00000487270.1:c.23G>A	p.Arg8Gln	p.R8Q	ENST00000487270	NM_133509.3	8	cGa/cAa																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40678613	40678613	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	51	586	1	ENST00000249776.8:c.355G>T	p.Glu119Ter	p.E119*	ENST00000249776	NM_033286.3	119	Gaa/Taa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817835	3817835	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	44	559	0	ENST00000262367.5:c.3136A>C	p.Met1046Leu	p.M1046L	ENST00000262367	NM_004380.2	1046	Atg/Ctg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857172	9857172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	25	384	1	ENST00000330684.3:c.4229C>T	p.Ser1410Leu	p.S1410L	ENST00000330684	NM_001134407.1	1410	tCg/tTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89357164	89357164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	47	600	0	ENST00000301030.4:c.470C>A	p.Thr157Asn	p.T157N	ENST00000301030	NM_001256183.1	157	aCc/aAc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983797	15983797	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	44	477	0	ENST00000268712.3:c.3325G>T	p.Glu1109Ter	p.E1109*	ENST00000268712	NM_006311.3	1109	Gaa/Taa																																																																														
CDK12	0	MSKCC	GRCh37	17	37627509	37627509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	54	543	0	ENST00000447079.4:c.1424C>A	p.Ser475Tyr	p.S475Y	ENST00000447079	NM_015083.1	475	tCt/tAt																																																																														
EZH1	0	MSKCC	GRCh37	17	40857132	40857132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	47	502	0	ENST00000428826.2:c.1909G>A	p.Glu637Lys	p.E637K	ENST00000428826		637	Gaa/Aaa																																																																														
EZH1	0	MSKCC	GRCh37	17	40865353	40865353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	40	573	0	ENST00000428826.2:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000428826		360	Cgt/Tgt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210688	36210688	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	48	539	2	ENST00000222270.7:c.439C>T	p.Arg147Ter	p.R147*	ENST00000222270	NM_014727.1	147	Cga/Tga																																																																														
POLD1	0	MSKCC	GRCh37	19	50912052	50912052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	66	722	0	ENST00000440232.2:c.1786G>A	p.Val596Ile	p.V596I	ENST00000440232	NM_002691.3	596	Gtc/Atc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966716	25966716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	40	449	1	ENST00000435504.4:c.2490G>T	p.Glu830Asp	p.E830D	ENST00000435504		830	gaG/gaT																																																																														
ALK	0	MSKCC	GRCh37	2	29543705	29543705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	65	629	1	ENST00000389048.3:c.1458C>A	p.Phe486Leu	p.F486L	ENST00000389048	NM_004304.4	486	ttC/ttA																																																																														
SF3B1	0	MSKCC	GRCh37	2	198262755	198262755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	40	477	1	ENST00000335508.6:c.3220C>T	p.Arg1074Cys	p.R1074C	ENST00000335508	NM_012433.2	1074	Cgt/Tgt																																																																														
CTLA4	0	MSKCC	GRCh37	2	204735645	204735645	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	27	314	1	ENST00000302823.3:c.446T>A	p.Ile149Asn	p.I149N	ENST00000302823	NM_005214.4	149	aTt/aAt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41076885	41076885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	40	434	0	ENST00000373198.4:c.1535C>T	p.Thr512Ile	p.T512I	ENST00000373198	NM_133170.3	512	aCc/aTc																																																																														
EP300	0	MSKCC	GRCh37	22	41531817	41531817	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	37	425	0	ENST00000263253.7:c.1529G>A	p.Ser510Asn	p.S510N	ENST00000263253	NM_001429.3	510	aGt/aAt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	39	426	0	ENST00000394830.3:c.2626C>A	p.Arg876Ser	p.R876S	ENST00000394830	NM_018313.4	876	Cgt/Agt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89457232	89457232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	23	358	0	ENST00000336596.2:c.1713G>T	p.Lys571Asn	p.K571N	ENST00000336596	NM_005233.5	571	aaG/aaT																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178947212	178947212	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	20	210	0	ENST00000263967.3:c.2648A>G	p.Asp883Gly	p.D883G	ENST00000263967	NM_006218.2	883	gAc/gGc																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502483	186502483	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	15	198	0	ENST00000323963.5:c.206A>G	p.Lys69Arg	p.K69R	ENST00000323963		69	aAa/aGa																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502876	186502876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	27	452	1	ENST00000323963.5:c.334G>A	p.Glu112Lys	p.E112K	ENST00000323963		112	Gaa/Aaa																																																																														
KIT	0	MSKCC	GRCh37	4	55565843	55565843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	44	525	0	ENST00000288135.5:c.667C>A	p.Leu223Ile	p.L223I	ENST00000288135	NM_000222.2	223	Ctt/Att																																																																														
FAT1	0	MSKCC	GRCh37	4	187524555	187524555	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	34	579	0	ENST00000441802.2:c.11125A>T	p.Lys3709Ter	p.K3709*	ENST00000441802	NM_005245.3	3709	Aaa/Taa																																																																														
DROSHA	0	MSKCC	GRCh37	5	31410883	31410883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	54	540	1	ENST00000344624.3:c.3637C>T	p.Arg1213Cys	p.R1213C	ENST00000344624		1213	Cgc/Tgc																																																																														
APC	0	MSKCC	GRCh37	5	112155038	112155038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	50	418	0	ENST00000257430.4:c.1309C>T	p.Pro437Ser	p.P437S	ENST00000257430	NM_000038.5	437	Cca/Tca																																																																														
NPM1	0	MSKCC	GRCh37	5	170818393	170818393	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	11	166	0	ENST00000296930.5:c.223A>G	p.Thr75Ala	p.T75A	ENST00000296930	NM_002520.6	75	Aca/Gca																																																																														
NSD1	0	MSKCC	GRCh37	5	176637786	176637786	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	34	597	2	ENST00000439151.2:c.2386G>T	p.Glu796Ter	p.E796*	ENST00000439151	NM_022455.4	796	Gaa/Taa																																																																														
NSD1	0	MSKCC	GRCh37	5	176721741	176721741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	31	362	0	ENST00000439151.2:c.7372C>T	p.Leu2458Phe	p.L2458F	ENST00000439151	NM_022455.4	2458	Ctc/Ttc																																																																														
STK19	0	MSKCC	GRCh37	6	31946708	31946708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	47	497	0	ENST00000375331.2:c.596G>T	p.Arg199Ile	p.R199I	ENST00000375331	NM_004197.1	199	aGa/aTa																																																																														
TAP2	0	MSKCC	GRCh37	6	32798417	32798417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	49	546	0	ENST00000374899.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000374899	NM_018833.2	480	cGc/cAc																																																																														
TAP2	0	MSKCC	GRCh37	6	32805714	32805714	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	34	543	0	ENST00000374899.4:c.297G>A	p.Trp99Ter	p.W99*	ENST00000374899	NM_018833.2	99	tgG/tgA																																																																														
PRDM1	0	MSKCC	GRCh37	6	106543547	106543547	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	24	325	0	ENST00000369096.4:c.349A>C	p.Ile117Leu	p.I117L	ENST00000369096	NM_001198.3	117	Ata/Cta																																																																														
SESN1	0	MSKCC	GRCh37	6	109415106	109415106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	89	766	0	ENST00000436639.2:c.171G>T	p.Glu57Asp	p.E57D	ENST00000436639	NM_014454.2	57	gaG/gaT																																																																														
ROS1	0	MSKCC	GRCh37	6	117715823	117715823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	37	399	0	ENST00000368508.3:c.935A>G	p.Glu312Gly	p.E312G	ENST00000368508	NM_002944.2	312	gAa/gGa																																																																														
CARD11	0	MSKCC	GRCh37	7	2985520	2985520	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	48	550	0	ENST00000396946.4:c.291T>G	p.Phe97Leu	p.F97L	ENST00000396946	NM_032415.4	97	ttT/ttG																																																																														
CDK6	0	MSKCC	GRCh37	7	92247397	92247397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	17	220	0	ENST00000265734.4:c.823G>T	p.Asp275Tyr	p.D275Y	ENST00000265734	NM_001259.6	275	Gac/Tac																																																																														
CDK6	0	MSKCC	GRCh37	7	92404095	92404095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	40	394	1	ENST00000265734.4:c.284C>A	p.Thr95Asn	p.T95N	ENST00000265734	NM_001259.6	95	aCt/aAt																																																																														
MET	0	MSKCC	GRCh37	7	116395492	116395492	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	24	398	0	ENST00000397752.3:c.1785A>C	p.Lys595Asn	p.K595N	ENST00000397752	NM_000245.2	595	aaA/aaC																																																																														
MET	0	MSKCC	GRCh37	7	116412036	116412036	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	55	627	1	ENST00000397752.3:c.3021T>A	p.Phe1007Leu	p.F1007L	ENST00000397752	NM_000245.2	1007	ttT/ttA																																																																														
PREX2	0	MSKCC	GRCh37	8	68981315	68981315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	20	349	0	ENST00000288368.4:c.1387C>T	p.Arg463Cys	p.R463C	ENST00000288368	NM_024870.2	463	Cgc/Tgc																																																																														
NBN	0	MSKCC	GRCh37	8	90965728	90965728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	17	235	1	ENST00000265433.3:c.1589C>A	p.Ser530Tyr	p.S530Y	ENST00000265433	NM_002485.4	530	tCt/tAt																																																																														
JAK2	0	MSKCC	GRCh37	9	5126334	5126334	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	29	213	0	ENST00000381652.3:c.3179A>G	p.Glu1060Gly	p.E1060G	ENST00000381652	NM_004972.3	1060	gAa/gGa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484298	8484298	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs7869444		P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	47	446	0	ENST00000356435.5:c.3234G>T	p.Glu1078Asp	p.E1078D	ENST00000356435		1078	gaG/gaT																																																																														
TEK	0	MSKCC	GRCh37	9	27183575	27183575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	28	399	0	ENST00000380036.4:c.1149G>T	p.Met383Ile	p.M383I	ENST00000380036	NM_000459.3	383	atG/atT																																																																														
ABL1	0	MSKCC	GRCh37	9	133729585	133729585	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	50	569	0	ENST00000318560.5:c.214T>G	p.Phe72Val	p.F72V	ENST00000318560	NM_005157.4	72	Ttt/Gtt																																																																														
BCOR	0	MSKCC	GRCh37	X	39913224	39913224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	50	556	0	ENST00000378444.4:c.4891G>A	p.Asp1631Asn	p.D1631N	ENST00000378444	NM_001123385.1	1631	Gat/Aat																																																																														
MED12	0	MSKCC	GRCh37	X	70347888	70347888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	45	560	0	ENST00000374080.3:c.3127C>A	p.Leu1043Ile	p.L1043I	ENST00000374080		1043	Ctt/Att																																																																														
ATRX	0	MSKCC	GRCh37	X	76937913	76937914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	30	422	0	ENST00000373344.5:c.2834dup	p.Ser946GlufsTer10	p.S946Efs*10	ENST00000373344	NM_000489.3	945	aag/aaAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76944361	76944361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	32	576	1	ENST00000373344.5:c.544C>A	p.Gln182Lys	p.Q182K	ENST00000373344	NM_000489.3	182	Caa/Aaa																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123504048	123504048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	19	287	0	ENST00000371139.4:c.224G>T	p.Arg75Ile	p.R75I	ENST00000371139	NM_001114937.2	75	aGa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	473	707	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
PARK2	0	MSKCC	GRCh37	6	162683747	162683747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	144	513	1	ENST00000366898.1:c.222G>T	p.Trp74Cys	p.W74C	ENST00000366898	NM_004562.2	74	tgG/tgT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106662	27106662	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	169	573	0	ENST00000324856.7:c.6273G>A	p.Trp2091Ter	p.W2091*	ENST00000324856	NM_006015.4	2091	tgG/tgA																																																																														
KDM5A	0	MSKCC	GRCh37	12	430249	430249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	107	375	0	ENST00000399788.2:c.2453G>A	p.Arg818Gln	p.R818Q	ENST00000399788	NM_001042603.1	818	cGg/cAg																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675245	40675245	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	34	497	0	ENST00000249776.8:c.209G>T	p.Gly70Val	p.G70V	ENST00000249776	NM_033286.3	70	gGg/gTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119808	70119808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	234	704	2	ENST00000245479.2:c.811del	p.Arg271AlafsTer8	p.R271Afs*8	ENST00000245479	NM_000346.3	270	ttC/tt																																																																														
APC	0	MSKCC	GRCh37	5	112174475	112174475	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	71	264	0	ENST00000257430.4:c.3184del	p.Gln1062LysfsTer64	p.Q1062Kfs*64	ENST00000257430	NM_000038.5	1062	Caa/aa																																																																														
IRF4	0	MSKCC	GRCh37	6	397163	397163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	135	464	1	ENST00000380956.4:c.548C>T	p.Pro183Leu	p.P183L	ENST00000380956	NM_001195286.1	183	cCg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	147	468	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	104	670	1	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
CIC	0	MSKCC	GRCh37	19	42795743	42795743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	107	842	0	ENST00000575354.2:c.2732C>T	p.Pro911Leu	p.P911L	ENST00000575354	NM_015125.3	911	cCg/cTg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259192	36259192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	87	704	0	ENST00000300305.3:c.299C>T	p.Ser100Phe	p.S100F	ENST00000300305		100	tCc/tTc																																																																														
BLM	0	MSKCC	GRCh37	15	91295082	91295082	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	29	404	0	ENST00000355112.3:c.865A>T	p.Ile289Phe	p.I289F	ENST00000355112	NM_000057.2	289	Att/Ttt																																																																														
TP53	0	MSKCC	GRCh37	17	7578480	7578480	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	72	728	0	ENST00000269305.4:c.450del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	150	acA/ac																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792895	33792896	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0015872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	19	167	0	ENST00000498907.2:c.425_426delinsTC	p.Arg142Ile	p.R142I	ENST00000498907	NM_004364.3	142	aGG/aTC																																																																														
LATS1	0	MSKCC	GRCh37	6	150001525	150001534	+	frameshift_variant	Frame_Shift_Del	DEL	GATGTAATTA	GATGTAATTA	-			P-0015872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	38	419	0	ENST00000253339.5:c.2070_2079del	p.Asn691ValfsTer13	p.N691Vfs*13	ENST00000253339		690	tcTAATTACATC/tc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398282	25398284	+	missense_variant	Missense_Mutation	ONP	CAC	CAC	AAG			P-0015872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	25	472	0	ENST00000256078.4:c.35_37delinsCTT	p.Gly12_Gly13delinsAlaCys	p.G12_G13delinsAC	ENST00000256078	NM_033360.2	12	gGTGgc/gCTTgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	23	388	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	589	714	0	ENST00000269305.4:c.815T>G	p.Val272Gly	p.V272G	ENST00000269305	NM_001126112.2	272	gTg/gGg																																																																														
MPL	0	MSKCC	GRCh37	1	43804352	43804352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	253	537	2	ENST00000372470.3:c.352C>A	p.Gln118Lys	p.Q118K	ENST00000372470	NM_005373.2	118	Cag/Aag																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724304	112724304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	309	571	1	ENST00000369452.4:c.188G>T	p.Gly63Val	p.G63V	ENST00000369452	NM_007373.3	63	gGg/gTg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81968132	81968132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	210	509	0	ENST00000359376.3:c.2838C>A	p.Asn946Lys	p.N946K	ENST00000359376	NM_002661.3	946	aaC/aaA																																																																														
INPP4A	0	MSKCC	GRCh37	2	99182608	99182608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	103	269	0	ENST00000074304.5:c.2411A>G	p.Asn804Ser	p.N804S	ENST00000074304	NM_001134224.1	804	aAt/aGt																																																																														
SETD2	0	MSKCC	GRCh37	3	47165272	47165272	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	134	300	0	ENST00000409792.3:c.854A>G	p.His285Arg	p.H285R	ENST00000409792	NM_014159.6	285	cAt/cGt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213797	66213797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	149	461	1	ENST00000273854.3:c.2633C>A	p.Pro878His	p.P878H	ENST00000273854	NM_004439.5	878	cCc/cAc																																																																														
DAXX	0	MSKCC	GRCh37	6	33286552	33286552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	149	502	0	ENST00000374542.5:c.2191G>C	p.Glu731Gln	p.E731Q	ENST00000374542	NM_001141970.1	731	Gaa/Caa																																																																														
TSC1	0	MSKCC	GRCh37	9	135781449	135781450	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0015874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	193	405	0	ENST00000298552.3:c.1515_1516del	p.Pro506LeufsTer28	p.P506Lfs*28	ENST00000298552	NM_001162426.1	505	tcTCcc/tccc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	228	477	0				ENST00000310581	NM_198253.2																																																																																
SETD2	0	MSKCC	GRCh37	3	47164805	47164805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	249	312	0	ENST00000409792.3:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000409792	NM_014159.6	441	Cga/Tga																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134688	41134688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	225	399	0	ENST00000379561.5:c.940C>T	p.Arg314Cys	p.R314C	ENST00000379561	NM_002015.3	314	Cgc/Tgc																																																																														
ATRX	0	MSKCC	GRCh37	X	76938406	76938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	281	614	0	ENST00000373344.5:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000373344	NM_000489.3	781	cGa/cAa																																																																														
AMER1	0	MSKCC	GRCh37	X	63410556	63410556	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	377	674	2	ENST00000330258.3:c.2611C>T	p.Arg871Ter	p.R871*	ENST00000330258	NM_152424.3	871	Cga/Tga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781326	3781326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	493	891	1	ENST00000262367.5:c.5039C>T	p.Ser1680Phe	p.S1680F	ENST00000262367	NM_004380.2	1680	tCc/tTc																																																																														
JUN	0	MSKCC	GRCh37	1	59248234	59248234	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	31	79	0	ENST00000371222.2:c.509A>T	p.Tyr170Phe	p.Y170F	ENST00000371222	NM_002228.3	170	tAc/tTc																																																																														
MDM4	0	MSKCC	GRCh37	1	204506575	204506575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	346	587	2	ENST00000367182.3:c.361G>A	p.Ala121Thr	p.A121T	ENST00000367182	NM_001278516.1	121	Gct/Act																																																																														
GREM1	0	MSKCC	GRCh37	15	33023104	33023105	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	223	462	1	ENST00000300177.4:c.213_214delGGinsAA	p.Glu72Lys	p.E72K	ENST00000300177	NM_001191322.1	71	gaGGag/gaAAag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857061	9857061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	164	284	0	ENST00000330684.3:c.4340C>T	p.Ser1447Phe	p.S1447F	ENST00000330684	NM_001134407.1	1447	tCc/tTc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830414	72830414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	160	246	0	ENST00000268489.5:c.6167C>T	p.Pro2056Leu	p.P2056L	ENST00000268489	NM_006885.3	2056	cCt/cTt																																																																														
NF1	0	MSKCC	GRCh37	17	29550536	29550536	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	241	465	1	ENST00000358273.4:c.1796G>A	p.Trp599Ter	p.W599*	ENST00000358273	NM_001042492.2	599	tGg/tAg																																																																														
NF1	0	MSKCC	GRCh37	17	29676137	29676137	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	139	355	0	ENST00000358273.4:c.7190-1G>A		p.X2397_splice	ENST00000358273	NM_001042492.2	2397																																																																															
STAT3	0	MSKCC	GRCh37	17	40468827	40468827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	416	749	0	ENST00000264657.5:c.2237C>T	p.Pro746Leu	p.P746L	ENST00000264657	NM_139276.2	746	cCc/cTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15303058	15303059	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	409	908	4	ENST00000263388.2:c.391_392delGGinsAA	p.Gly131Asn	p.G131N	ENST00000263388	NM_000435.2	131	GGt/AAt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36222997	36222997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	449	847	1	ENST00000222270.7:c.5626C>T	p.Pro1876Ser	p.P1876S	ENST00000222270	NM_014727.1	1876	Ccc/Tcc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212484001	212484001	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	139	356	0	ENST00000342788.4:c.2203-1G>A		p.X735_splice	ENST00000342788	NM_005235.2	735																																																																															
INHA	0	MSKCC	GRCh37	2	220439997	220439998	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	495	1034	2	ENST00000243786.2:c.850_851delCCinsTT	p.Pro284Phe	p.P284F	ENST00000243786	NM_002191.3	284	CCc/TTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730868	40730868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	345	720	1	ENST00000373198.4:c.3667G>A	p.Asp1223Asn	p.D1223N	ENST00000373198	NM_133170.3	1223	Gat/Aat																																																																														
EP300	0	MSKCC	GRCh37	22	41533725	41533725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	375	671	0	ENST00000263253.7:c.1691C>T	p.Thr564Ile	p.T564I	ENST00000263253	NM_001429.3	564	aCt/aTt																																																																														
EP300	0	MSKCC	GRCh37	22	41573516	41573516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	429	754	1	ENST00000263253.7:c.5801G>A	p.Arg1934Lys	p.R1934K	ENST00000263253	NM_001429.3	1934	aGa/aAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47162459	47162459	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	213	440	0	ENST00000409792.3:c.3667C>T	p.Gln1223Ter	p.Q1223*	ENST00000409792	NM_014159.6	1223	Caa/Taa																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185161402	185161402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	326	537	0	ENST00000265026.3:c.829C>T	p.His277Tyr	p.H277Y	ENST00000265026	NM_004721.4	277	Cat/Tat																																																																														
TP63	0	MSKCC	GRCh37	3	189604223	189604224	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	353	678	2	ENST00000264731.3:c.1390_1391delCCinsTT	p.Pro464Leu	p.P464L	ENST00000264731	NM_003722.4	464	CCa/TTa																																																																														
TERT	0	MSKCC	GRCh37	5	1254487	1254488	+	missense_variant	Missense_Mutation	DNP	CC	CC	TG			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	315	662	1	ENST00000310581.5:c.3290_3291delGGinsCA	p.Arg1097Thr	p.R1097T	ENST00000310581	NM_198253.2	1097	aGG/aCA																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509774	106509774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	343	640	0	ENST00000359195.3:c.1768C>T	p.Pro590Ser	p.P590S	ENST00000359195	NM_002649.2	590	Cct/Tct																																																																														
PREX2	0	MSKCC	GRCh37	8	68993059	68993059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	350	396	1	ENST00000288368.4:c.1864G>A	p.Gly622Arg	p.G622R	ENST00000288368	NM_024870.2	622	Gga/Aga																																																																														
BCOR	0	MSKCC	GRCh37	X	39933265	39933265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	449	795	1	ENST00000378444.4:c.1334C>T	p.Ser445Phe	p.S445F	ENST00000378444	NM_001123385.1	445	tCt/tTt																																																																														
GATA1	0	MSKCC	GRCh37	X	48650623	48650623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	359	717	0	ENST00000376670.3:c.593C>T	p.Pro198Leu	p.P198L	ENST00000376670	NM_002049.3	198	cCc/cTc																																																																														
AR	0	MSKCC	GRCh37	X	66765277	66765277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	344	631	0	ENST00000374690.3:c.289C>T	p.Pro97Ser	p.P97S	ENST00000374690	NM_000044.3	97	Ccc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	26	599	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0015883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	21	913	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																														
RB1	0	MSKCC	GRCh37	13	48951118	48951130	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAGAAATTTGC	AAGAGAAATTTGC	-			P-0015883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	40	473	0	ENST00000267163.4:c.1280_1292del	p.Lys427IlefsTer26	p.K427Ifs*26	ENST00000267163	NM_000321.2	427	aAAGAGAAATTTGCt/at																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828125	72828125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	47	761	1	ENST00000268489.5:c.8456C>T	p.Ser2819Phe	p.S2819F	ENST00000268489	NM_006885.3	2819	tCc/tTc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573586	48573587	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0015883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	14	370	1	ENST00000342988.3:c.170_171del	p.Leu57TyrfsTer12	p.L57Yfs*12	ENST00000342988	NM_005359.5	57	tTA/t																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	453	687	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PAX5	0	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	200	602	2	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	108	355	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469503	25469503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	154	514	0	ENST00000264709.3:c.1265T>C	p.Leu422Pro	p.L422P	ENST00000264709	NM_175629.2	422	cTg/cCg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426808	121426808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	180	509	0	ENST00000257555.6:c.499G>A	p.Val167Ile	p.V167I	ENST00000257555		167	Gtc/Atc																																																																														
FLT1	0	MSKCC	GRCh37	13	29005327	29005327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	95	491	1	ENST00000282397.4:c.934C>T	p.Arg312Cys	p.R312C	ENST00000282397	NM_002019.4	312	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112174916	112174916	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	100	260	0	ENST00000257430.4:c.3625G>T	p.Glu1209Ter	p.E1209*	ENST00000257430	NM_000038.5	1209	Gaa/Taa																																																																														
PTCH1	0	MSKCC	GRCh37	9	98221957	98221957	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	92	433	2	ENST00000331920.6:c.2812C>T	p.Gln938Ter	p.Q938*	ENST00000331920	NM_000264.3	938	Cag/Tag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391547	139391547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	362	754	1	ENST00000277541.6:c.6644C>T	p.Ser2215Leu	p.S2215L	ENST00000277541	NM_017617.3	2215	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	49	605	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	169	609	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	167	580	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	56	272	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161222	56161222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	40	629	0	ENST00000399503.3:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000399503	NM_005921.1	364	cGg/cAg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	279	779	1	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	11	239	2	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	59	632	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
MITF	0	MSKCC	GRCh37	3	69928425	69928425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	96	538	0	ENST00000352241.4:c.245C>T	p.Ala82Val	p.A82V	ENST00000352241	NM_198159.2	82	gCg/gTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	113	551	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
FAT1	0	MSKCC	GRCh37	4	187521285	187521285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200468783		P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	71	763	0	ENST00000441802.2:c.11870G>A	p.Arg3957His	p.R3957H	ENST00000441802	NM_005245.3	3957	cGt/cAt																																																																														
CTCF	0	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	61	654	0	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	89	546	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	215	626	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
AKT2	0	MSKCC	GRCh37	19	40742171	40742171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	224	718	1	ENST00000392038.2:c.953C>T	p.Ala318Val	p.A318V	ENST00000392038	NM_001626.4	318	gCg/gTg																																																																														
CIC	0	MSKCC	GRCh37	19	42795597	42795597	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142397024		P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	95	877	0	ENST00000575354.2:c.2677C>T	p.Pro893Ser	p.P893S	ENST00000575354	NM_015125.3	893	Ccc/Tcc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101300	27101300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	128	740	0	ENST00000324856.7:c.4582C>T	p.Arg1528Ter	p.R1528*	ENST00000324856	NM_006015.4	1528	Cga/Tga																																																																														
MYC	0	MSKCC	GRCh37	8	128752960	128752960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	69	525	0	ENST00000377970.2:c.1121A>G	p.His374Arg	p.H374R	ENST00000377970	NM_002467.4	374	cAc/cGc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115837	8115837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200935603		P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	66	751	2	ENST00000346208.3:c.1183G>A	p.Ala395Thr	p.A395T	ENST00000346208		395	Gcc/Acc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	104	604	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MDC1	0	MSKCC	GRCh37	6	30672177	30672177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	55	660	2	ENST00000376406.3:c.4783C>T	p.Arg1595Trp	p.R1595W	ENST00000376406	NM_014641.2	1595	Cgg/Tgg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5225773	5225773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	111	765	4	ENST00000357368.4:c.2459G>A	p.Arg820His	p.R820H	ENST00000357368	NM_002850.3	820	cGc/cAc																																																																														
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	50	576	0	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																														
JAK1	0	MSKCC	GRCh37	1	65313336	65313336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	59	549	1	ENST00000342505.4:c.1778C>T	p.Thr593Met	p.T593M	ENST00000342505	NM_002227.2	593	aCg/aTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11317160	11317160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	57	688	1	ENST00000361445.4:c.334C>T	p.Arg112Trp	p.R112W	ENST00000361445	NM_004958.3	112	Cgg/Tgg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	15	223	2	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg																																																																														
AXIN1	0	MSKCC	GRCh37	16	360046	360046	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	55	672	0	ENST00000262320.3:c.1043T>C	p.Ile348Thr	p.I348T	ENST00000262320	NM_003502.3	348	aTc/aCc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94201025	94201025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	44	450	0	ENST00000323929.3:c.1052G>A	p.Arg351His	p.R351H	ENST00000323929	NM_005591.3	351	cGt/cAt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10279006	10279006	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	137	616	0	ENST00000340748.4:c.755C>T	p.Pro252Leu	p.P252L	ENST00000340748		252	cCa/cTa																																																																														
SPEN	0	MSKCC	GRCh37	1	16260188	16260188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	106	527	2	ENST00000375759.3:c.7453G>A	p.Ala2485Thr	p.A2485T	ENST00000375759	NM_015001.2	2485	Gcc/Acc																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553539	106553539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	130	343	0	ENST00000369096.4:c.1504G>A	p.Ala502Thr	p.A502T	ENST00000369096	NM_001198.3	502	Gcc/Acc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63845633	63845634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	33	338	0	ENST00000279873.7:c.1376dup	p.Pro461AlafsTer26	p.P461Afs*26	ENST00000279873	NM_032199.2	458	gcc/gCcc																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88683201	88683201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	46	377	0	ENST00000372037.3:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000372037	NM_004329.2	471	Cgt/Tgt																																																																														
ABL1	0	MSKCC	GRCh37	9	133760714	133760714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	97	880	0	ENST00000318560.5:c.3037C>T	p.Arg1013Trp	p.R1013W	ENST00000318560	NM_005157.4	1013	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107008	27107008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	172	409	0	ENST00000324856.7:c.6619C>T	p.Gln2207Ter	p.Q2207*	ENST00000324856	NM_006015.4	2207	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	86	657	1	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16261134	16261134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	89	397	0	ENST00000375759.3:c.8399C>T	p.Ala2800Val	p.A2800V	ENST00000375759	NM_015001.2	2800	gCg/gTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16261146	16261146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	46	395	1	ENST00000375759.3:c.8411C>T	p.Ala2804Val	p.A2804V	ENST00000375759	NM_015001.2	2804	gCg/gTg																																																																														
STK40	0	MSKCC	GRCh37	1	36807477	36807477	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139437228		P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	69	697	1	ENST00000373129.3:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000373129	NM_032017.1	396	cGg/cAg																																																																														
DDR2	0	MSKCC	GRCh37	1	162725454	162725454	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	43	528	0	ENST00000367921.3:c.566A>G	p.Asp189Gly	p.D189G	ENST00000367921	NM_006182.2	189	gAt/gGt																																																																														
WT1	0	MSKCC	GRCh37	11	32421555	32421555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	112	631	0	ENST00000332351.3:c.1037C>T	p.Thr346Met	p.T346M	ENST00000332351	NM_024426.4	346	aCg/aTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71949351	71949351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	140	691	1	ENST00000298229.2:c.3731C>T	p.Pro1244Leu	p.P1244L	ENST00000298229	NM_001567.3	1244	cCg/cTg																																																																														
EED	0	MSKCC	GRCh37	11	85967532	85967532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	47	421	1	ENST00000263360.6:c.530C>A	p.Pro177His	p.P177H	ENST00000263360	NM_003797.3	177	cCt/cAt																																																																														
PTPN11	0	MSKCC	GRCh37	12	112888166	112888166	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	64	717	0	ENST00000351677.2:c.182A>C	p.Asp61Ala	p.D61A	ENST00000351677	NM_002834.3	61	gAt/gCt																																																																														
POLE	0	MSKCC	GRCh37	12	133237644	133237644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	88	780	0	ENST00000320574.5:c.2971G>A	p.Glu991Lys	p.E991K	ENST00000320574	NM_006231.2	991	Gag/Aag																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514431	103514431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	46	309	2	ENST00000355739.4:c.932C>T	p.Ser311Phe	p.S311F	ENST00000355739	NM_000123.3	311	tCc/tTc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30132999	30132999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	65	671	1	ENST00000331968.5:c.602G>A	p.Arg201Gln	p.R201Q	ENST00000331968	NM_002742.2	201	cGg/cAg																																																																														
TSHR	0	MSKCC	GRCh37	14	81610144	81610144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	101	442	0	ENST00000298171.2:c.1742C>T	p.Ala581Val	p.A581V	ENST00000298171	NM_000369.2	581	gCa/gTa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67358662	67358662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	98	739	0	ENST00000327367.4:c.170C>T	p.Thr57Met	p.T57M	ENST00000327367	NM_005902.3	57	aCg/aTg																																																																														
ERCC4	0	MSKCC	GRCh37	16	14021959	14021959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	50	704	0	ENST00000311895.7:c.659C>A	p.Pro220His	p.P220H	ENST00000311895	NM_005236.2	220	cCt/cAt																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804348	46804348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	71	548	0	ENST00000290295.7:c.659G>A	p.Arg220His	p.R220H	ENST00000290295	NM_006361.5	220	cGc/cAc																																																																														
RNF43	0	MSKCC	GRCh37	17	56437510	56437510	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	59	678	0	ENST00000407977.2:c.952G>T	p.Glu318Ter	p.E318*	ENST00000407977		318	Gag/Tag																																																																														
RNF43	0	MSKCC	GRCh37	17	56439931	56439931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	170	651	2	ENST00000407977.2:c.661C>T	p.Arg221Trp	p.R221W	ENST00000407977		221	Cgg/Tgg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78858811	78858811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	55	463	0	ENST00000306801.3:c.1846C>T	p.Arg616Cys	p.R616C	ENST00000306801	NM_020761.2	616	Cgc/Tgc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78931492	78931492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	65	632	0	ENST00000306801.3:c.3439G>A	p.Val1147Ile	p.V1147I	ENST00000306801	NM_020761.2	1147	Gtc/Atc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2211145	2211145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	291	908	1	ENST00000398665.3:c.1399G>A	p.Val467Met	p.V467M	ENST00000398665	NM_032482.2	467	Gtg/Atg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	86	905	1	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
ALK	0	MSKCC	GRCh37	2	29519792	29519792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	192	721	0	ENST00000389048.3:c.1779G>T	p.Trp593Cys	p.W593C	ENST00000389048	NM_004304.4	593	tgG/tgT																																																																														
ACVR1	0	MSKCC	GRCh37	2	158636847	158636847	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	120	414	0	ENST00000263640.3:c.331+2T>G		p.X111_splice	ENST00000263640	NM_001105.4	111																																																																															
RTEL1	0	MSKCC	GRCh37	20	62321649	62321649	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	123	617	0	ENST00000508582.2:c.2340G>A	p.Met780Ile	p.M780I	ENST00000508582		780	atG/atA																																																																														
CHEK2	0	MSKCC	GRCh37	22	29083929	29083929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	17	221	2	ENST00000328354.6:c.1588G>A	p.Ala530Thr	p.A530T	ENST00000328354	NM_007194.3	530	Gcc/Acc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259517	89259517	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	72	466	2	ENST00000336596.2:c.661C>T	p.Gln221Ter	p.Q221*	ENST00000336596	NM_005233.5	221	Cag/Tag																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670718	134670718	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	50	562	0	ENST00000398015.3:c.629T>C	p.Met210Thr	p.M210T	ENST00000398015	NM_004441.4	210	aTg/aCg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523735	176523735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	57	615	0	ENST00000292408.4:c.2146C>A	p.Pro716Thr	p.P716T	ENST00000292408	NM_213647.1	716	Cca/Aca																																																																														
FGFR4	0	MSKCC	GRCh37	5	176524306	176524306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201490532		P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	77	779	4	ENST00000292408.4:c.2167C>T	p.Arg723Cys	p.R723C	ENST00000292408	NM_213647.1	723	Cgt/Tgt																																																																														
NSD1	0	MSKCC	GRCh37	5	176694608	176694608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	62	575	1	ENST00000439151.2:c.5192G>A	p.Arg1731His	p.R1731H	ENST00000439151	NM_022455.4	1731	cGt/cAt																																																																														
NSD1	0	MSKCC	GRCh37	5	176710839	176710839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	40	555	0	ENST00000439151.2:c.6061C>T	p.His2021Tyr	p.H2021Y	ENST00000439151	NM_022455.4	2021	Cat/Tat																																																																														
E2F3	0	MSKCC	GRCh37	6	20481530	20481530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	55	421	0	ENST00000346618.3:c.599G>T	p.Gly200Val	p.G200V	ENST00000346618	NM_001949.4	200	gGg/gTg																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27777962	27777962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	26	291	0	ENST00000369163.2:c.111G>T	p.Lys37Asn	p.K37N	ENST00000369163	NM_003536.2	37	aaG/aaT																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323261	31323261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151275072		P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	17	242	0	ENST00000412585.2:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000412585	NM_005514.6	243	cGg/cAg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157469889	157469889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	36	592	0	ENST00000346085.5:c.2683C>A	p.Pro895Thr	p.P895T	ENST00000346085	NM_020732.3	895	Ccc/Acc																																																																														
PARK2	0	MSKCC	GRCh37	6	162394338	162394338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	84	388	1	ENST00000366898.1:c.730G>A	p.Val244Ile	p.V244I	ENST00000366898	NM_004562.2	244	Gtc/Atc																																																																														
PARK2	0	MSKCC	GRCh37	6	162864370	162864370	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	52	502	0	ENST00000366898.1:c.143A>G	p.Lys48Arg	p.K48R	ENST00000366898	NM_004562.2	48	aAg/aGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55211013	55211013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	59	463	1	ENST00000275493.2:c.256G>A	p.Ala86Thr	p.A86T	ENST00000275493	NM_005228.3	86	Gct/Act																																																																														
SMO	0	MSKCC	GRCh37	7	128843336	128843336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	165	778	0	ENST00000249373.3:c.443A>G	p.Gln148Arg	p.Q148R	ENST00000249373	NM_005631.4	148	cAg/cGg																																																																														
PREX2	0	MSKCC	GRCh37	8	68939479	68939479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	124	561	0	ENST00000288368.4:c.464G>A	p.Arg155Gln	p.R155Q	ENST00000288368	NM_024870.2	155	cGg/cAg																																																																														
AGO2	0	MSKCC	GRCh37	8	141542217	141542217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	40	583	0	ENST00000220592.5:c.2506G>A	p.Gly836Arg	p.G836R	ENST00000220592	NM_012154.3	836	Ggg/Agg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739691	145739691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	229	706	2	ENST00000428558.2:c.1760C>T	p.Ala587Val	p.A587V	ENST00000428558	NM_004260.3	587	gCg/gTg																																																																														
TEK	0	MSKCC	GRCh37	9	27192600	27192600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	121	546	0	ENST00000380036.4:c.1603C>T	p.Arg535Cys	p.R535C	ENST00000380036	NM_000459.3	535	Cgc/Tgc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139407858	139407858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	83	639	2	ENST00000277541.6:c.2339G>A	p.Arg780Gln	p.R780Q	ENST00000277541	NM_017617.3	780	cGg/cAg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413893	139413893	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	71	493	0	ENST00000277541.6:c.865+2C>G		p.X289_splice	ENST00000277541	NM_017617.3	289																																																																															
RBM10	0	MSKCC	GRCh37	X	47045551	47045551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	38	651	3	ENST00000329236.7:c.2284G>A	p.Gly762Ser	p.G762S	ENST00000329236	NM_001204466.1	762	Ggc/Agc																																																																														
ARAF	0	MSKCC	GRCh37	X	47424213	47424213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	72	636	3	ENST00000377045.4:c.218C>T	p.Ala73Val	p.A73V	ENST00000377045	NM_001654.4	73	gCc/gTc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103527850	103527850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	69	481	0	ENST00000355739.4:c.3158G>A	p.Gly1053Glu	p.G1053E	ENST00000355739	NM_000123.3	1053	gGa/gAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	44	688	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0015886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	25	441	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
MED12	0	MSKCC	GRCh37	X	70339286	70339286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	42	250	0	ENST00000374080.3:c.163G>A	p.Glu55Lys	p.E55K	ENST00000374080		55	Gag/Aag																																																																														
CSDE1	0	MSKCC	GRCh37	1	115266531	115266531	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	36	536	1	ENST00000438362.2:c.1984C>T	p.Gln662Ter	p.Q662*	ENST00000438362	NM_001242891.1	662	Caa/Taa																																																																														
PAK1	0	MSKCC	GRCh37	11	77064592	77064592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	41	554	0	ENST00000356341.3:c.825G>T	p.Lys275Asn	p.K275N	ENST00000356341	NM_002576.4	275	aaG/aaT																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375936	118375936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	27	440	0	ENST00000534358.1:c.9329C>T	p.Ser3110Phe	p.S3110F	ENST00000534358	NM_005933.3	3110	tCt/tTt																																																																														
MDM2	0	MSKCC	GRCh37	12	69203049	69203049	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	33	471	0	ENST00000462284.1:c.76C>G	p.Pro26Ala	p.P26A	ENST00000462284	NM_002392.5	26	Cca/Gca																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7983225	7983225	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	36	536	0	ENST00000319144.4:c.789C>G	p.Phe263Leu	p.F263L	ENST00000319144	NM_001139.2	263	ttC/ttG																																																																														
PRKCI	0	MSKCC	GRCh37	3	170016852	170016852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	55	582	1	ENST00000295797.4:c.1657G>A	p.Asp553Asn	p.D553N	ENST00000295797	NM_002740.5	553	Gat/Aat																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928321	178928321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	33	461	0	ENST00000263967.3:c.1507G>A	p.Glu503Lys	p.E503K	ENST00000263967	NM_006218.2	503	Gaa/Aaa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149501488	149501488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	52	746	0	ENST00000261799.4:c.2299G>A	p.Glu767Lys	p.E767K	ENST00000261799	NM_002609.3	767	Gag/Aag																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900158	101900158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	20	251	0	ENST00000374994.4:c.592C>T	p.Gln198Ter	p.Q198*	ENST00000374994	NM_004612.2	198	Cag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106497	27106498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	120	764	0	ENST00000324856.7:c.6109dup	p.Gln2037ProfsTer62	p.Q2037Pfs*62	ENST00000324856	NM_006015.4	2036	-/C																																																																														
KDM5A	0	MSKCC	GRCh37	12	401951	401952	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0015890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	70	357	1	ENST00000399788.2:c.4839_4840del	p.Asn1614LeufsTer15	p.N1614Lfs*15	ENST00000399788	NM_001042603.1	1613	caGAac/caac																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20159749	20159749	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	121	516	0	ENST00000379607.5:c.10A>C	p.Asn4His	p.N4H	ENST00000379607	NM_001412.3	4	Aat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	146	434	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KRAS	0	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	243	430	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																														
PTEN	0	MSKCC	GRCh37	10	89711874	89711874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	114	334	1	ENST00000371953.3:c.493-1G>A		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																															
PTEN	0	MSKCC	GRCh37	10	89720853	89720854	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATACT			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	119	296	0	ENST00000371953.3:c.1005_1009dup	p.Phe337TyrfsTer9	p.F337Yfs*9	ENST00000371953	NM_000314.4	335	cga/cgATACTa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604652	48604652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	106	262	0	ENST00000342988.3:c.1474G>T	p.Val492Phe	p.V492F	ENST00000342988	NM_005359.5	492	Gtt/Ttt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41274899	41274899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	124	456	0	ENST00000349496.5:c.1149G>T	p.Trp383Cys	p.W383C	ENST00000349496	NM_001904.3	383	tgG/tgT																																																																														
BRAF	0	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	450	469	0	ENST00000288602.6:c.1803A>C	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaC																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133392	38133392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	94	252	0	ENST00000317025.8:c.4081G>A	p.Glu1361Lys	p.E1361K	ENST00000317025	NM_023034.1	1361	Gag/Aag																																																																														
NTRK2	0	MSKCC	GRCh37	9	87325683	87325683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	155	380	0	ENST00000277120.3:c.560C>T	p.Ala187Val	p.A187V	ENST00000277120		187	gCa/gTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			573	314	725	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	647	519	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			336	169	356	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	638	805	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	297	844	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
IL10	0	MSKCC	GRCh37	1	206945647	206945647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	177	518	0	ENST00000423557.1:c.134G>A	p.Arg45Gln	p.R45Q	ENST00000423557	NM_000572.2	45	cGa/cAa																																																																														
TET1	0	MSKCC	GRCh37	10	70446309	70446309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	264	734	1	ENST00000373644.4:c.5249C>T	p.Pro1750Leu	p.P1750L	ENST00000373644	NM_030625.2	1750	cCt/cTt																																																																														
MEN1	0	MSKCC	GRCh37	11	64572104	64572104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141679530		P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			845	307	619	0	ENST00000337652.1:c.1550C>T	p.Ser517Leu	p.S517L	ENST00000337652	NM_130803.2	517	tCa/tTa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828836	72828836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	182	500	0	ENST00000268489.5:c.7745C>T	p.Pro2582Leu	p.P2582L	ENST00000268489	NM_006885.3	2582	cCa/cTa																																																																														
INSR	0	MSKCC	GRCh37	19	7117173	7117173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			879	246	630	0	ENST00000302850.5:c.4043C>T	p.Ser1348Leu	p.S1348L	ENST00000302850	NM_000208.2	1348	tCg/tTg																																																																														
CXCR4	0	MSKCC	GRCh37	2	136872492	136872492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	184	283	0	ENST00000241393.3:c.1006G>A	p.Gly336Arg	p.G336R	ENST00000241393	NM_003467.2	336	Gga/Aga																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164865	36164865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			847	134	680	5	ENST00000300305.3:c.1010C>T	p.Pro337Leu	p.P337L	ENST00000300305		337	cCc/cTc																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138199940	138199940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	140	408	0	ENST00000237289.4:c.1358C>T	p.Ser453Phe	p.S453F	ENST00000237289	NM_001270507.1	453	tCc/tTc																																																																														
PARK2	0	MSKCC	GRCh37	6	161990433	161990433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	169	633	0	ENST00000366898.1:c.887C>A	p.Ser296Tyr	p.S296Y	ENST00000366898	NM_004562.2	296	tCc/tAc																																																																														
NBN	0	MSKCC	GRCh37	8	90976659	90976659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			510	124	553	0	ENST00000265433.3:c.973C>T	p.Pro325Ser	p.P325S	ENST00000265433	NM_002485.4	325	Cct/Tct																																																																														
RHEB	0	MSKCC	GRCh37	7	151174470	151174470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015895-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			609	60	521	0	ENST00000262187.5:c.224C>T	p.Ser75Phe	p.S75F	ENST00000262187	NM_005614.3	75	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	182	568	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	51	229	0	ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727430	66727430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	61	319	0	ENST00000307102.5:c.146G>A	p.Arg49His	p.R49H	ENST00000307102	NM_002755.3	49	cGc/cAc																																																																														
DDR2	0	MSKCC	GRCh37	1	162745474	162745474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	49	402	0	ENST00000367921.3:c.1889C>T	p.Ser630Phe	p.S630F	ENST00000367921	NM_006182.2	630	tCt/tTt																																																																														
ATRX	0	MSKCC	GRCh37	X	76778728	76778728	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0015903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	278	493	0	ENST00000373344.5:c.6849+2T>C		p.X2283_splice	ENST00000373344	NM_000489.3	2283																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	363	658	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	109	269	1	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
ESR1	0	MSKCC	GRCh37	6	152265427	152265427	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	96	535	0	ENST00000206249.3:c.880A>C	p.Ser294Arg	p.S294R	ENST00000206249	NM_000125.3	294	Agc/Cgc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877391	40877391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	140	664	0	ENST00000373198.4:c.2305G>A	p.Val769Met	p.V769M	ENST00000373198	NM_133170.3	769	Gtg/Atg																																																																														
RET	0	MSKCC	GRCh37	10	43604624	43604624	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	143	685	2	ENST00000355710.3:c.1209C>A	p.His403Gln	p.H403Q	ENST00000355710	NM_020975.4	403	caC/caA																																																																														
TSC2	0	MSKCC	GRCh37	16	2135307	2135307	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	138	708	0	ENST00000219476.3:c.4646A>T	p.Tyr1549Phe	p.Y1549F	ENST00000219476	NM_000548.3	1549	tAt/tTt																																																																														
CDH1	0	MSKCC	GRCh37	16	68844140	68844140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	124	645	0	ENST00000261769.5:c.728A>G	p.Glu243Gly	p.E243G	ENST00000261769	NM_004360.3	243	gAg/gGg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5229356	5229356	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0015904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	145	825	0	ENST00000357368.4:c.2350-3C>T		p.X784_splice	ENST00000357368	NM_002850.3	784																																																																															
CCNE1	0	MSKCC	GRCh37	19	30314611	30314613	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0015904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	133	687	0	ENST00000262643.3:c.1163_1165del	p.Pro388del	p.P388del	ENST00000262643	NM_001238.2	387	tCTCct/tct																																																																														
SETD2	0	MSKCC	GRCh37	3	47098765	47098765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	150	740	0	ENST00000409792.3:c.6509G>T	p.Gly2170Val	p.G2170V	ENST00000409792	NM_014159.6	2170	gGt/gTt																																																																														
NSD1	0	MSKCC	GRCh37	5	176673798	176673798	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	87	545	2	ENST00000439151.2:c.4497+1G>T		p.X1499_splice	ENST00000439151	NM_022455.4	1499																																																																															
PNRC1	0	MSKCC	GRCh37	6	89790884	89790884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	224	614	0	ENST00000336032.3:c.271C>T	p.Arg91Trp	p.R91W	ENST00000336032	NM_006813.2	91	Cgg/Tgg																																																																														
ABL1	0	MSKCC	GRCh37	9	133760789	133760789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	224	644	0	ENST00000318560.5:c.3112G>T	p.Ala1038Ser	p.A1038S	ENST00000318560	NM_005157.4	1038	Gcg/Tcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	262	523	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0015905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	116	370	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
AXL	0	MSKCC	GRCh37	19	41758774	41758774	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	46	625	3	ENST00000301178.4:c.1828C>T	p.Arg610Ter	p.R610*	ENST00000301178	NM_021913.4	610	Cga/Tga																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211778	36211778	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	72	669	0	ENST00000222270.7:c.1529G>C	p.Ser510Thr	p.S510T	ENST00000222270	NM_014727.1	510	aGt/aCt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41267008	41267008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	158	350	0	ENST00000349496.5:c.679G>T	p.Gly227Cys	p.G227C	ENST00000349496	NM_001904.3	227	Ggc/Tgc																																																																														
RYBP	0	MSKCC	GRCh37	3	72495642	72495678	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTACCTGGTGGAGGTGCCTTTCCTCACATCGCAGAT	AGTACCTGGTGGAGGTGCCTTTCCTCACATCGCAGAT	-			P-0015906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	83	321	0	ENST00000477973.2:c.392_423+5del		p.X131_splice	ENST00000477973	NM_012234.5	131																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	77	366	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PPARG	0	MSKCC	GRCh37	3	12458572	12458572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	100	618	0	ENST00000287820.6:c.1189G>C	p.Glu397Gln	p.E397Q	ENST00000287820	NM_015869.4	397	Gag/Cag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0015908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	69	746	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
KIT	0	MSKCC	GRCh37	4	55593580	55593606	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGAAACCCATGTATGAAGTACAGTGGA	AGAAACCCATGTATGAAGTACAGTGGA	-			P-0015913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	201	393	0	ENST00000288135.5:c.1648_1674del		p.X550_splice	ENST00000288135	NM_000222.2	550																																																																															
EGFR	0	MSKCC	GRCh37	7	55249029	55249029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	8	530	1	ENST00000275493.2:c.2327G>A	p.Arg776His	p.R776H	ENST00000275493	NM_005228.3	776	cGc/cAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47038879	47038879	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	71	715	0	ENST00000329236.7:c.655G>T	p.Glu219Ter	p.E219*	ENST00000329236	NM_001204466.1	219	Gag/Tag																																																																														
FAM58A	0	MSKCC	GRCh37	X	152861518	152861533	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAAGTAAATTGAA	GGCCAAGTAAATTGAA	-			P-0015913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	79	520	0	ENST00000406277.2:c.219_234del	p.Ser74AlafsTer49	p.S74Afs*49	ENST00000406277	NM_152274.4	73	tcTTCAATTTACTTGGCC/tc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0015915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	352	475	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
STAT3	0	MSKCC	GRCh37	17	40475063	40475063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	445	535	0	ENST00000264657.5:c.1847A>G	p.Glu616Gly	p.E616G	ENST00000264657	NM_139276.2	616	gAa/gGa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49415656	49415656	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	213	265	0	ENST00000301067.7:c.16522-1G>A		p.X5508_splice	ENST00000301067	NM_003482.3	5508																																																																															
ZFHX3	0	MSKCC	GRCh37	16	72832607	72832607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	190	219	2	ENST00000268489.5:c.3974C>T	p.Ser1325Leu	p.S1325L	ENST00000268489	NM_006885.3	1325	tCa/tTa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591111	67591137	+	inframe_deletion	In_Frame_Del	DEL	AGACCTTATCCAGCTGAGAAAGACGAG	AGACCTTATCCAGCTGAGAAAGACGAG	-			P-0015915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	145	347	0	ENST00000274335.5:c.1709_1735del	p.Leu570_Asp578del	p.L570_D578del	ENST00000274335		568	ccAGACCTTATCCAGCTGAGAAAGACGAGa/cca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	136	402	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0015924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	190	617	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
CIC	0	MSKCC	GRCh37	19	42795066	42795066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	152	728	2	ENST00000575354.2:c.2146C>T	p.Arg716Trp	p.R716W	ENST00000575354	NM_015125.3	716	Cgg/Tgg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151884550	151884550	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	134	316	0	ENST00000262189.6:c.4805C>G	p.Ser1602Ter	p.S1602*	ENST00000262189	NM_170606.2	1602	tCa/tGa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603023	48603023	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	33	256	0	ENST00000342988.3:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000342988	NM_005359.5	442	Cag/Tag																																																																														
MET	0	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	244	725	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
POLE	0	MSKCC	GRCh37	12	133250250	133250250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	98	643	0	ENST00000320574.5:c.1270C>T	p.Leu424Phe	p.L424F	ENST00000320574	NM_006231.2	424	Ctc/Ttc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99192893	99192893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	50	389	0	ENST00000268035.6:c.83C>A	p.Thr28Lys	p.T28K	ENST00000268035	NM_000875.3	28	aCg/aAg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259470	89259470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	84	543	0	ENST00000336596.2:c.614C>A	p.Thr205Lys	p.T205K	ENST00000336596	NM_005233.5	205	aCa/aAa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149499126	149499126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	70	509	0	ENST00000261799.4:c.2702G>T	p.Gly901Val	p.G901V	ENST00000261799	NM_002609.3	901	gGc/gTc																																																																														
MET	0	MSKCC	GRCh37	7	116411566	116411567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	108	315	0	ENST00000397752.3:c.2745_2746insG	p.Ser916ValfsTer47	p.S916Vfs*47	ENST00000397752	NM_000245.2	915	-/G																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	302	587	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	76	452	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	105	684	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
SPEN	0	MSKCC	GRCh37	1	16256568	16256568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	112	664	0	ENST00000375759.3:c.3833C>T	p.Ser1278Phe	p.S1278F	ENST00000375759	NM_015001.2	1278	tCc/tTc																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957441	175957441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	333	577	0	ENST00000367669.3:c.1955G>A	p.Gly652Glu	p.G652E	ENST00000367669	NM_022457.5	652	gGa/gAa																																																																														
NTHL1	0	MSKCC	GRCh37	16	2094797	2094797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	120	565	1	ENST00000219066.1:c.383G>T	p.Arg128Leu	p.R128L	ENST00000219066	NM_002528.5	128	cGc/cTc																																																																														
CCNE1	0	MSKCC	GRCh37	19	30312692	30312692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	99	662	1	ENST00000262643.3:c.673G>A	p.Glu225Lys	p.E225K	ENST00000262643	NM_001238.2	225	Gaa/Aaa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99172088	99172088	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	323	488	0	ENST00000074304.5:c.1654G>T	p.Glu552Ter	p.E552*	ENST00000074304	NM_001134224.1	552	Gag/Tag																																																																														
EP300	0	MSKCC	GRCh37	22	41548306	41548306	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	184	536	1	ENST00000263253.7:c.3094A>T	p.Thr1032Ser	p.T1032S	ENST00000263253	NM_001429.3	1032	Act/Tct																																																																														
KDR	0	MSKCC	GRCh37	4	55984897	55984897	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	164	571	0	ENST00000263923.4:c.232G>T	p.Glu78Ter	p.E78*	ENST00000263923	NM_002253.2	78	Gag/Tag																																																																														
INPP4B	0	MSKCC	GRCh37	4	143067044	143067044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	77	515	0	ENST00000262992.4:c.1669G>C	p.Asp557His	p.D557H	ENST00000262992	NM_001101669.1	557	Gat/Cat																																																																														
IL7R	0	MSKCC	GRCh37	5	35861077	35861077	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	79	434	0	ENST00000303115.3:c.206T>C	p.Leu69Pro	p.L69P	ENST00000303115	NM_002185.3	69	cTg/cCg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120283	94120283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	50	337	0	ENST00000369303.4:c.768G>T	p.Trp256Cys	p.W256C	ENST00000369303	NM_004440.3	256	tgG/tgT																																																																														
LATS1	0	MSKCC	GRCh37	6	149983095	149983095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	98	582	0	ENST00000253339.5:c.3163G>C	p.Glu1055Gln	p.E1055Q	ENST00000253339		1055	Gaa/Caa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845126	151845126	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	68	499	0	ENST00000262189.6:c.13886C>A	p.Ser4629Ter	p.S4629*	ENST00000262189	NM_170606.2	4629	tCa/tAa																																																																														
SOX17	0	MSKCC	GRCh37	8	55371984	55371984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	137	655	2	ENST00000297316.4:c.674C>A	p.Ser225Tyr	p.S225Y	ENST00000297316	NM_022454.3	225	tCc/tAc																																																																														
PREX2	0	MSKCC	GRCh37	8	69028091	69028091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	286	906	3	ENST00000288368.4:c.3250C>T	p.Arg1084Trp	p.R1084W	ENST00000288368	NM_024870.2	1084	Cgg/Tgg																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22006014	22006014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	417	714	2	ENST00000276925.6:c.389G>T	p.Gly130Val	p.G130V	ENST00000276925	NM_004936.3	130	gGg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	186	792	1	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115755	8115879	+	frameshift_variant	Frame_Shift_Del	DEL	AATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCGCCCT	AATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCGCCCT	-			P-0015930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	104	670	0	ENST00000346208.3:c.1101_1225del	p.Lys367AsnfsTer98	p.K367Nfs*98	ENST00000346208		367	aaAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCGCCCTtc/aatc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41278093	41278093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	111	373	0	ENST00000349496.5:c.1969G>A	p.Ala657Thr	p.A657T	ENST00000349496	NM_001904.3	657	Gct/Act																																																																														
FLT4	0	MSKCC	GRCh37	5	180056999	180056999	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	191	878	0	ENST00000261937.6:c.620A>T	p.Glu207Val	p.E207V	ENST00000261937	NM_182925.4	207	gAg/gTg																																																																														
KLF4	0	MSKCC	GRCh37	9	110248151	110248151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	152	455	0	ENST00000374672.4:c.1321G>T	p.Asp441Tyr	p.D441Y	ENST00000374672	NM_004235.4	441	Gat/Tat																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	433	719	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023918	27023918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	55	136	0	ENST00000324856.7:c.1024G>C	p.Ala342Pro	p.A342P	ENST00000324856	NM_006015.4	342	Gcg/Ccg																																																																														
DDR2	0	MSKCC	GRCh37	1	162746141	162746141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	108	350	0	ENST00000367921.3:c.2264C>G	p.Ser755Cys	p.S755C	ENST00000367921	NM_006182.2	755	tCt/tGt																																																																														
TET1	0	MSKCC	GRCh37	10	70333688	70333694	+	protein_altering_variant	In_Frame_Del	DEL	CCAACTC	CCAACTC	AAAT			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	199	585	3	ENST00000373644.4:c.1593_1599delinsAAAT	p.Gln532_Leu533delinsAsn	p.Q532_L533delinsN	ENST00000373644	NM_030625.2	531	gcCCAACTC/gcAAAT																																																																														
GLI1	0	MSKCC	GRCh37	12	57857787	57857799	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGCCCGCCCT	TCTGGCCCGCCCT	-			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	158	732	0	ENST00000228682.2:c.110_122del	p.Gly37AlafsTer37	p.G37Afs*37	ENST00000228682	NM_005269.2	36	TCTGGCCCGCCCTtc/tc																																																																														
UPF1	0	MSKCC	GRCh37	19	18956781	18956802	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCTGCAGGTTGGGCCCGAAGG	TGCTGCAGGTTGGGCCCGAAGG	-			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	285	424	0	ENST00000262803.5:c.232-8_245del		p.X78_splice	ENST00000262803	NM_002911.3	78																																																																															
FAT1	0	MSKCC	GRCh37	4	187554880	187554911	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGTTGTAGTTTGACTTCTGTTCTGCATCAA	GAGGTTGTAGTTTGACTTCTGTTCTGCATCAA	-			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	102	612	0	ENST00000441802.2:c.4250_4281del	p.Leu1417HisfsTer24	p.L1417Hfs*24	ENST00000441802	NM_005245.3	1417	cTTGATGCAGAACAGAAGTCAAACTACAACCTC/c																																																																														
TRAF2	0	MSKCC	GRCh37	9	139793221	139793221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	119	790	1	ENST00000247668.2:c.29G>T	p.Gly10Val	p.G10V	ENST00000247668	NM_021138.3	10	gGc/gTc																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	272	522	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	299	600	1	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																														
JAK1	0	MSKCC	GRCh37	1	65349082	65349082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	265	532	0	ENST00000342505.4:c.83A>G	p.Asn28Ser	p.N28S	ENST00000342505	NM_002227.2	28	aAc/aGc																																																																														
ATM	0	MSKCC	GRCh37	11	108119831	108119831	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	123	303	0	ENST00000278616.4:c.1235+2T>C		p.X412_splice	ENST00000278616	NM_000051.3	412																																																																															
PRKD1	0	MSKCC	GRCh37	14	30108064	30108064	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	360	707	1	ENST00000331968.5:c.743A>T	p.Asn248Ile	p.N248I	ENST00000331968	NM_002742.2	248	aAt/aTt																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029140	14029140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	160	347	0	ENST00000311895.7:c.1351A>G	p.Met451Val	p.M451V	ENST00000311895	NM_005236.2	451	Atg/Gtg																																																																														
CDH1	0	MSKCC	GRCh37	16	68853188	68853188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	255	515	1	ENST00000261769.5:c.1571G>T	p.Arg524Leu	p.R524L	ENST00000261769	NM_004360.3	524	cGg/cTg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696721	47696721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	212	502	0	ENST00000347630.2:c.227T>C	p.Leu76Ser	p.L76S	ENST00000347630	NM_001007230.1	76	tTa/tCa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212295745	212295745	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	292	583	1	ENST00000342788.4:c.2568T>A	p.His856Gln	p.H856Q	ENST00000342788	NM_005235.2	856	caT/caA																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164569	36164569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	248	528	0	ENST00000300305.3:c.1306T>C	p.Ser436Pro	p.S436P	ENST00000300305		436	Tcc/Ccc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449829	149449829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	342	907	1	ENST00000286301.3:c.1235A>G	p.Asn412Ser	p.N412S	ENST00000286301	NM_005211.3	412	aAc/aGc																																																																														
STK11	0	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0015936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	184	665	0	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																																																														
APC	0	MSKCC	GRCh37	5	112174502	112174502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	103	392	0	ENST00000257430.4:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000257430	NM_000038.5	1071	Caa/Taa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346880	89346880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	14	214	0	ENST00000301030.4:c.6070C>T	p.Pro2024Ser	p.P2024S	ENST00000301030	NM_001256183.1	2024	Ccg/Tcg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600005	10600005	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	259	712	0	ENST00000171111.5:c.1571del	p.Gly524AlafsTer8	p.G524Afs*8	ENST00000171111	NM_203500.1	524	gGc/gc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36219958	36219958	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	182	519	0	ENST00000222270.7:c.4760A>T	p.Tyr1587Phe	p.Y1587F	ENST00000222270	NM_014727.1	1587	tAc/tTc																																																																														
POLD1	0	MSKCC	GRCh37	19	50902742	50902742	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	221	758	1	ENST00000440232.2:c.316+1G>A		p.X106_splice	ENST00000440232	NM_002691.3	106																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	1669	733	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	122	635	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858738	9858738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149698593		P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	24	324	0	ENST00000330684.3:c.2663C>T	p.Thr888Met	p.T888M	ENST00000330684	NM_001134407.1	888	aCg/aTg																																																																														
RET	0	MSKCC	GRCh37	10	43606826	43606826	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	30	854	0	ENST00000355710.3:c.1435G>C	p.Ala479Pro	p.A479P	ENST00000355710	NM_020975.4	479	Gcc/Ccc																																																																														
TBX3	0	MSKCC	GRCh37	12	115120787	115120787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	34	617	0	ENST00000257566.3:c.219G>C	p.Glu73Asp	p.E73D	ENST00000257566	NM_016569.3	73	gaG/gaC																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911939	32911939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	26	612	0	ENST00000380152.3:c.3447G>A	p.Met1149Ile	p.M1149I	ENST00000380152		1149	atG/atA																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138426001	138426003	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTT	CTT	-			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	16	444	0	ENST00000289153.2:c.1528_1530del	p.Lys510del	p.K510del	ENST00000289153	NM_006219.2	510	AAG/-																																																																														
FAT1	0	MSKCC	GRCh37	4	187540391	187540391	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	26	480	0	ENST00000441802.2:c.7349C>G	p.Ser2450Ter	p.S2450*	ENST00000441802	NM_005245.3	2450	tCa/tGa																																																																														
TAP1	0	MSKCC	GRCh37	6	32821517	32821517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	27	857	1	ENST00000354258.4:c.77C>T	p.Pro26Leu	p.P26L	ENST00000354258	NM_000593.5	26	cCa/cTa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157511219	157511219	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	29	729	1	ENST00000346085.5:c.3737C>A	p.Ser1246Ter	p.S1246*	ENST00000346085	NM_020732.3	1246	tCa/tAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500790	8500790	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	52	459	0	ENST00000356435.5:c.2092G>C	p.Glu698Gln	p.E698Q	ENST00000356435		698	Gag/Cag																																																																														
BCOR	0	MSKCC	GRCh37	X	39923169	39923169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	18	563	1	ENST00000378444.4:c.3539C>T	p.Ser1180Phe	p.S1180F	ENST00000378444	NM_001123385.1	1180	tCt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	82	535	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SUFU	0	MSKCC	GRCh37	10	104263935	104263935	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	10	193	2	ENST00000369902.3:c.30del	p.Gly11AlafsTer85	p.G11Afs*85	ENST00000369902	NM_016169.3	9	gCc/gc																																																																														
GLI1	0	MSKCC	GRCh37	12	57864757	57864757	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138157845		P-0015938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	83	683	2	ENST00000228682.2:c.2234C>T	p.Ala745Val	p.A745V	ENST00000228682	NM_005269.2	745	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	66	500	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1278	228	632	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PGR	0	MSKCC	GRCh37	11	100998774	100998774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1227	87	612	0	ENST00000325455.5:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000325455	NM_001202474.3	343	cGg/cAg																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197253	26197253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	52	325	0	ENST00000356476.2:c.226G>A	p.Ala76Thr	p.A76T	ENST00000356476		76	Gcg/Acg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971118	21971118	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	180	466	0	ENST00000304494.5:c.240del	p.Val82CysfsTer64	p.V82Cfs*64	ENST00000304494	NM_000077.4	80	cgA/cg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971118	21971118	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	180	466	0	ENST00000304494.5:c.240del	p.Val82CysfsTer64	p.V82Cfs*64	ENST00000304494	NM_000077.4	80	cgA/cg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971118	21971118	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	180	466	0	ENST00000304494.5:c.240del	p.Val82CysfsTer64	p.V82Cfs*64	ENST00000304494	NM_000077.4	80	cgA/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	90	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	104	444	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0015940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	74	302	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39537654	39537654	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	54	285	0	ENST00000262039.4:c.188T>C	p.Val63Ala	p.V63A	ENST00000262039	NM_002647.2	63	gTt/gCt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459759	149459759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	89	501	2	ENST00000286301.3:c.448C>T	p.Arg150Cys	p.R150C	ENST00000286301	NM_005211.3	150	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	264	583	1	ENST00000269305.4:c.577C>A	p.His193Asn	p.H193N	ENST00000269305	NM_001126112.2	193	Cat/Aat																																																																														
IL7R	0	MSKCC	GRCh37	5	35876117	35876117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	48	331	0	ENST00000303115.3:c.909C>A	p.Phe303Leu	p.F303L	ENST00000303115	NM_002185.3	303	ttC/ttA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	183	431	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	49	296	0	ENST00000342988.3:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000342988	NM_005359.5	351	Gat/Tat																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	131	641	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480466	89480466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	66	244	1	ENST00000336596.2:c.2303C>T	p.Ser768Leu	p.S768L	ENST00000336596	NM_005233.5	768	tCg/tTg																																																																														
ATR	0	MSKCC	GRCh37	3	142281157	142281157	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	41	369	0	ENST00000350721.4:c.1087T>C	p.Ser363Pro	p.S363P	ENST00000350721	NM_001184.3	363	Tct/Cct																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092710	27092710	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0015947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	51	349	0	ENST00000324856.7:c.2733-2A>T		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																															
PTEN	0	MSKCC	GRCh37	10	89712011	89712012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	35	228	0	ENST00000371953.3:c.631dup	p.Cys211LeufsTer32	p.C211Lfs*32	ENST00000371953	NM_000314.4	210	act/acTt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346351	89346351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	40	434	0	ENST00000301030.4:c.6599C>T	p.Pro2200Leu	p.P2200L	ENST00000301030	NM_001256183.1	2200	cCt/cTt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259334	36259334	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	36	502	0	ENST00000300305.3:c.157A>G	p.Ser53Gly	p.S53G	ENST00000300305		53	Agc/Ggc																																																																														
CDH1	0	MSKCC	GRCh37	16	68847277	68847277	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	301	514	0	ENST00000261769.5:c.1199A>T	p.Asp400Val	p.D400V	ENST00000261769	NM_004360.3	400	gAt/gTt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0015950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	462	602	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																														
RB1	0	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0015950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	131	179	2	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	277	498	1	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100213	157100253	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCTC	GGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCTC	-			P-0015950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	82	53	0	ENST00000346085.5:c.1160_1200del	p.Ala387GlyfsTer134	p.A387Gfs*134	ENST00000346085	NM_020732.3	384	GGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCTCg/g																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31394101	31394101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	106	418	0	ENST00000328111.2:c.2388A>T	p.Lys796Asn	p.K796N	ENST00000328111	NM_006892.3	796	aaA/aaT																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0015951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	141	294	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	61	520	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	68	811	2	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46243560	46243560	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	34	237	0	ENST00000334344.6:c.1912+1G>A		p.X638_splice	ENST00000334344	NM_152641.2	638																																																																															
GLI1	0	MSKCC	GRCh37	12	57865223	57865223	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	60	717	0	ENST00000228682.2:c.2700T>G	p.Asn900Lys	p.N900K	ENST00000228682	NM_005269.2	900	aaT/aaG																																																																														
FLT1	0	MSKCC	GRCh37	13	29041755	29041755	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	21	259	0	ENST00000282397.4:c.65-1G>T		p.X22_splice	ENST00000282397	NM_002019.4	22																																																																															
GRIN2A	0	MSKCC	GRCh37	16	10274099	10274099	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	28	608	0	ENST00000330684.3:c.170C>G	p.Pro57Arg	p.P57R	ENST00000330684	NM_001134407.1	57	cCc/cGc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602785	10602785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	43	867	0	ENST00000171111.5:c.793C>T	p.Gln265Ter	p.Q265*	ENST00000171111	NM_203500.1	265	Cag/Tag																																																																														
STAG2	0	MSKCC	GRCh37	X	123197795	123197795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	36	552	0	ENST00000218089.9:c.1919G>T	p.Cys640Phe	p.C640F	ENST00000218089	NM_001042749.1	640	tGt/tTt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	364	402	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	61	503	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	12	118	1	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716352	52716352	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	389	482	0	ENST00000322088.6:c.796A>C	p.Lys266Gln	p.K266Q	ENST00000322088	NM_014225.5	266	Aag/Cag																																																																														
KLF4	0	MSKCC	GRCh37	9	110250242	110250242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	439	600	1	ENST00000374672.4:c.433C>T	p.Pro145Ser	p.P145S	ENST00000374672	NM_004235.4	145	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	482	546	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	297	235	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	1002	588	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
ROS1	0	MSKCC	GRCh37	6	117714396	117714396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	183	350	0	ENST00000368508.3:c.1253C>T	p.Ser418Leu	p.S418L	ENST00000368508	NM_002944.2	418	tCa/tTa																																																																														
BLM	0	MSKCC	GRCh37	15	91312683	91312683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	143	264	0	ENST00000355112.3:c.2422C>T	p.Arg808Cys	p.R808C	ENST00000355112	NM_000057.2	808	Cgt/Tgt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123325023	123325023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	267	528	1	ENST00000358487.5:c.305C>T	p.Ser102Phe	p.S102F	ENST00000358487	NM_000141.4	102	tCc/tTc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30100062	30100062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1182	275	584	0	ENST00000331968.5:c.1558C>T	p.Leu520Phe	p.L520F	ENST00000331968	NM_002742.2	520	Ctc/Ttc																																																																														
CYLD	0	MSKCC	GRCh37	16	50830259	50830259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	425	410	0	ENST00000398568.2:c.2702C>T	p.Pro901Leu	p.P901L	ENST00000398568	NM_001042412.1	901	cCt/cTt																																																																														
BRD4	0	MSKCC	GRCh37	19	15366369	15366369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	336	304	0	ENST00000263377.2:c.1786C>T	p.Pro596Ser	p.P596S	ENST00000263377	NM_058243.2	596	Cct/Tct																																																																														
AXL	0	MSKCC	GRCh37	19	41759558	41759558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	625	709	0	ENST00000301178.4:c.1981G>A	p.Glu661Lys	p.E661K	ENST00000301178	NM_021913.4	661	Gag/Aag																																																																														
PMS1	0	MSKCC	GRCh37	2	190742017	190742017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	190	408	0	ENST00000441310.2:c.2654C>T	p.Ser885Phe	p.S885F	ENST00000441310	NM_000534.4	885	tCc/tTc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251637	212251637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	441	350	0	ENST00000342788.4:c.3422C>T	p.Pro1141Leu	p.P1141L	ENST00000342788	NM_005235.2	1141	cCa/cTa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980769	40980769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	283	458	1	ENST00000373198.4:c.1717G>A	p.Gly573Ser	p.G573S	ENST00000373198	NM_133170.3	573	Ggc/Agc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164735	36164735	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	713	680	1	ENST00000300305.3:c.1140C>A	p.Tyr380Ter	p.Y380*	ENST00000300305		380	taC/taA																																																																														
ERG	0	MSKCC	GRCh37	21	39795337	39795337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	232	431	0	ENST00000288319.7:c.383C>T	p.Pro128Leu	p.P128L	ENST00000288319	NM_182918.3	128	cCa/cTa																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41747924	41747924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	609	606	1	ENST00000226382.2:c.845C>T	p.Ser282Phe	p.S282F	ENST00000226382	NM_003924.3	282	tCc/tTc																																																																														
KDR	0	MSKCC	GRCh37	4	55971152	55971152	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	536	439	0	ENST00000263923.4:c.1646-1G>A		p.X549_splice	ENST00000263923	NM_002253.2	549																																																																															
TET2	0	MSKCC	GRCh37	4	106164055	106164055	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	285	296	0	ENST00000380013.4:c.3565A>C	p.Ser1189Arg	p.S1189R	ENST00000380013	NM_001127208.2	1189	Agt/Cgt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143159060	143159060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	289	328	0	ENST00000262992.4:c.793C>T	p.Pro265Ser	p.P265S	ENST00000262992	NM_001101669.1	265	Cct/Tct																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149499586	149499586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	434	499	1	ENST00000261799.4:c.2687T>G	p.Ile896Ser	p.I896S	ENST00000261799	NM_002609.3	896	aTc/aGc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32178633	32178633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	1040	656	1	ENST00000375023.3:c.2761G>A	p.Gly921Arg	p.G921R	ENST00000375023	NM_004557.3	921	Gga/Aga																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956573	93956573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	172	317	0	ENST00000369303.4:c.2663G>A	p.Gly888Glu	p.G888E	ENST00000369303	NM_004440.3	888	gGa/gAa																																																																														
CARD11	0	MSKCC	GRCh37	7	2979485	2979485	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	321	555	2	ENST00000396946.4:c.762G>T	p.Lys254Asn	p.K254N	ENST00000396946	NM_032415.4	254	aaG/aaT																																																																														
PREX2	0	MSKCC	GRCh37	8	68950455	68950455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	265	406	0	ENST00000288368.4:c.767C>T	p.Ser256Phe	p.S256F	ENST00000288368	NM_024870.2	256	tCt/tTt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8633401	8633401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	434	422	0	ENST00000356435.5:c.268C>T	p.Pro90Ser	p.P90S	ENST00000356435		90	Ccg/Tcg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44970634	44970634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	514	210	0	ENST00000377967.4:c.4184C>T	p.Pro1395Leu	p.P1395L	ENST00000377967	NM_021140.2	1395	cCa/cTa																																																																														
MGA	0	MSKCC	GRCh37	15	41988452	41988455	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0015962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	467	448	0	ENST00000219905.7:c.1246_1249delAACA	p.Asn416ValfsTer7	p.N416Vfs*7	ENST00000219905	NM_001164273.1	415	tCAAAc/tc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30105512	30105512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	82	361	0	ENST00000331968.5:c.1174G>A	p.Ala392Thr	p.A392T	ENST00000331968	NM_002742.2	392	Gcc/Acc																																																																														
CDK12	0	MSKCC	GRCh37	17	37687288	37687288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	266	363	0	ENST00000447079.4:c.4192C>A	p.Pro1398Thr	p.P1398T	ENST00000447079	NM_015083.1	1398	Cca/Aca																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091809	29091809	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202089930		P-0015962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	506	496	0	ENST00000328354.6:c.1148C>T	p.Thr383Ile	p.T383I	ENST00000328354	NM_007194.3	383	aCc/aTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	251	585	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	207	499	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	334	354	1	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA																																																																														
RAD51C	0	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	116	463	0	ENST00000337432.4:c.61C>T	p.Pro21Ser	p.P21S	ENST00000337432	NM_058216.2	21	Cca/Tca																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175891	176175891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	31	145	0	ENST00000367669.3:c.224C>T	p.Ser75Leu	p.S75L	ENST00000367669	NM_022457.5	75	tCg/tTg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114901023	114901023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	239	584	0	ENST00000543371.1:c.633C>A	p.Phe211Leu	p.F211L	ENST00000543371	NM_001198531.1	211	ttC/ttA																																																																														
ERBB3	0	MSKCC	GRCh37	12	56494962	56494962	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	204	441	0	ENST00000267101.3:c.3319G>C	p.Glu1107Gln	p.E1107Q	ENST00000267101	NM_001982.3	1107	Gag/Cag																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987165	36987165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	145	756	0	ENST00000354822.5:c.524C>T	p.Ser175Leu	p.S175L	ENST00000354822	NM_001079668.2	175	tCg/tTg																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39595513	39595513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	152	327	1	ENST00000262039.4:c.1399G>A	p.Asp467Asn	p.D467N	ENST00000262039	NM_002647.2	467	Gat/Aat																																																																														
GNA11	0	MSKCC	GRCh37	19	3094724	3094724	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	173	527	0	ENST00000078429.4:c.75C>G	p.Ile25Met	p.I25M	ENST00000078429	NM_002067.2	25	atC/atG																																																																														
IRS1	0	MSKCC	GRCh37	2	227660992	227660992	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	291	410	1	ENST00000305123.5:c.2463C>A	p.Cys821Ter	p.C821*	ENST00000305123	NM_005544.2	821	tgC/tgA																																																																														
IRS1	0	MSKCC	GRCh37	2	227662172	227662172	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	390	586	2	ENST00000305123.5:c.1283C>A	p.Ser428Ter	p.S428*	ENST00000305123	NM_005544.2	428	tCg/tAg																																																																														
ATR	0	MSKCC	GRCh37	3	142218544	142218544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	215	349	0	ENST00000350721.4:c.5305G>A	p.Glu1769Lys	p.E1769K	ENST00000350721	NM_001184.3	1769	Gaa/Aaa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38952478	38952478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	122	276	0	ENST00000357387.3:c.2947G>C	p.Asp983His	p.D983H	ENST00000357387	NM_152756.3	983	Gat/Cat																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56176561	56176561	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	301	355	0	ENST00000399503.3:c.2111C>G	p.Ser704Ter	p.S704*	ENST00000399503	NM_005921.1	704	tCa/tGa																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031939	26031939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	169	291	0	ENST00000244661.2:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000244661	NM_003537.3	117	cGa/cAa																																																																														
MDC1	0	MSKCC	GRCh37	6	30679733	30679733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	240	484	1	ENST00000376406.3:c.1986G>T	p.Gln662His	p.Q662H	ENST00000376406	NM_014641.2	662	caG/caT																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965690	93965690	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	336	430	2	ENST00000369303.4:c.2238G>C	p.Met746Ile	p.M746I	ENST00000369303	NM_004440.3	746	atG/atC																																																																														
CARD11	0	MSKCC	GRCh37	7	2976761	2976761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	78	739	1	ENST00000396946.4:c.1251G>A	p.Met417Ile	p.M417I	ENST00000396946	NM_032415.4	417	atG/atA																																																																														
ETV1	0	MSKCC	GRCh37	7	13975403	13975403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	176	405	1	ENST00000405192.2:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000405192	NM_001163147.1	162	Gac/Tac																																																																														
RAD21	0	MSKCC	GRCh37	8	117862873	117862875	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0015964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	246	381	0	ENST00000297338.2:c.1602_1604del	p.Glu534del	p.E534del	ENST00000297338	NM_006265.2	534	gaAGAt/gat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	66	348	1				ENST00000310581	NM_198253.2																																																																																
RB1	0	MSKCC	GRCh37	13	49030364	49030364	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	55	216	0	ENST00000267163.4:c.1841delA	p.Lys614ArgfsTer9	p.K614Rfs*9	ENST00000267163	NM_000321.2	613	ccA/cc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803172	1803172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	119	560	2	ENST00000260795.2:c.524G>A	p.Arg175His	p.R175H	ENST00000260795		175	cGc/cAc																																																																														
MDC1	0	MSKCC	GRCh37	6	30668406	30668406	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	107	281	0	ENST00000376406.3:c.6106C>T	p.Gln2036Ter	p.Q2036*	ENST00000376406	NM_014641.2	2036	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	295	515	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	186	349	2				ENST00000310581	NM_198253.2																																																																																
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	212	465	0	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43707876	43707876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	367	573	0	ENST00000382044.4:c.5005C>T	p.Leu1669Phe	p.L1669F	ENST00000382044	NM_001141980.1	1669	Ctc/Ttc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680635	88680635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	165	262	0	ENST00000360948.2:c.622G>A	p.Asp208Asn	p.D208N	ENST00000360948	NM_001012338.2	208	Gac/Aac																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463583	25463583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	198	367	0	ENST00000264709.3:c.2099C>T	p.Pro700Leu	p.P700L	ENST00000264709	NM_175629.2	700	cCa/cTa																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197369	26197369	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	238	227	0	ENST00000356476.2:c.110A>T	p.Lys37Met	p.K37M	ENST00000356476		37	aAg/aTg																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841231	15841242	+	inframe_deletion	In_Frame_Del	DEL	AGCCGGAGCCGG	AGCCGGAGCCGG	-			P-0015968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	129	154	0	ENST00000307771.7:c.1332_1343delGAGCCGGAGCCG	p.Ser445_Arg448del	p.S445_R448del	ENST00000307771	NM_005089.3	439	AGCCGGAGCCGG/-																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55144148	55144148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	189	533	0	ENST00000257290.5:c.1977C>A	p.Asn659Lys	p.N659K	ENST00000257290	NM_006206.4	659	aaC/aaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	438	644	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1220644	1220644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	671	814	0	ENST00000326873.7:c.662C>T	p.Pro221Leu	p.P221L	ENST00000326873	NM_000455.4	221	cCg/cTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15296182	15296182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	205	709	0	ENST00000263388.2:c.2182C>T	p.Arg728Cys	p.R728C	ENST00000263388	NM_000435.2	728	Cgc/Tgc																																																																														
ATM	0	MSKCC	GRCh37	11	108141777	108141843	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTACCATCTTAGTATCTAATGCTTTTAAAGGAGCTTCCTGGAGAAGAGTACCCCTTGCCAATGGA	TCCTACCATCTTAGTATCTAATGCTTTTAAAGGAGCTTCCTGGAGAAGAGTACCCCTTGCCAATGGA	-			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	67	411	0	ENST00000278616.4:c.2839-14_2891delTCCTACCATCTTAGTATCTAATGCTTTTAAAGGAGCTTCCTGGAGAAGAGTACCCCTTGCCAATGGA		p.X947_splice	ENST00000278616	NM_000051.3	947																																																																															
PTPRT	0	MSKCC	GRCh37	20	40748601	40748601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	98	412	0	ENST00000373198.4:c.2915G>T	p.Arg972Leu	p.R972L	ENST00000373198	NM_133170.3	972	cGa/cTa																																																																														
BAP1	0	MSKCC	GRCh37	3	52439247	52439247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	135	638	0	ENST00000460680.1:c.995C>T	p.Pro332Leu	p.P332L	ENST00000460680	NM_004656.3	332	cCc/cTc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361106	66361106	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	139	329	0	ENST00000273854.3:c.1066A>G	p.Arg356Gly	p.R356G	ENST00000273854	NM_004439.5	356	Aga/Gga																																																																														
EPHA7	0	MSKCC	GRCh37	6	93964382	93964382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	104	482	0	ENST00000369303.4:c.2515G>A	p.Asp839Asn	p.D839N	ENST00000369303	NM_004440.3	839	Gac/Aac																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430818	78430818	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	170	679	0	ENST00000370768.2:c.571A>C	p.Met191Leu	p.M191L	ENST00000370768	NM_003902.3	191	Atg/Ctg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	140	644	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	151	531	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581195	48581195	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	112	520	1	ENST00000342988.3:c.499G>T	p.Glu167Ter	p.E167*	ENST00000342988	NM_005359.5	167	Gag/Tag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	206	512	1	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139407561	139407563	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0015972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	153	829	0	ENST00000277541.6:c.2377_2379delAAC	p.Asn793del	p.N793del	ENST00000277541	NM_017617.3	793	AAC/-																																																																														
TP53	0	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	238	648	0	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64136019	64136019	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199674030		P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	94	665	1	ENST00000334205.4:c.1280G>A	p.Arg427His	p.R427H	ENST00000334205	NM_003942.2	427	cGc/cAc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900171	101900171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	48	274	0	ENST00000374994.4:c.605C>T	p.Ala202Val	p.A202V	ENST00000374994	NM_004612.2	202	gCg/gTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402517	139402517	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	79	695	1	ENST00000277541.6:c.3400C>T	p.Gln1134Ter	p.Q1134*	ENST00000277541	NM_017617.3	1134	Cag/Tag																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664814	138664814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	61	267	1	ENST00000330315.3:c.751C>A	p.Pro251Thr	p.P251T	ENST00000330315	NM_023067.3	251	Ccg/Acg																																																																														
TAP2	0	MSKCC	GRCh37	6	32797769	32797769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78328107		P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	186	617	1	ENST00000374899.4:c.1733C>T	p.Ala578Val	p.A578V	ENST00000374899	NM_018833.2	578	gCg/gTg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9783310	9783310	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	46	747	0	ENST00000377346.4:c.2554A>C	p.Lys852Gln	p.K852Q	ENST00000377346	NM_005026.3	852	Aag/Cag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120497745	120497745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	87	544	1	ENST00000256646.2:c.2137C>T	p.His713Tyr	p.H713Y	ENST00000256646	NM_024408.3	713	Cat/Tat																																																																														
FH	0	MSKCC	GRCh37	1	241665839	241665839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	79	513	2	ENST00000366560.3:c.1140G>T	p.Met380Ile	p.M380I	ENST00000366560	NM_000143.3	380	atG/atT																																																																														
CCND2	0	MSKCC	GRCh37	12	4385387	4385387	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	76	251	0	ENST00000261254.3:c.411+1G>A		p.X137_splice	ENST00000261254	NM_001759.3	137																																																																															
GLI1	0	MSKCC	GRCh37	12	57865680	57865680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	159	876	0	ENST00000228682.2:c.3157C>A	p.Leu1053Met	p.L1053M	ENST00000228682	NM_005269.2	1053	Ctg/Atg																																																																														
IGF1	0	MSKCC	GRCh37	12	102813309	102813309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	63	394	0	ENST00000307046.8:c.380C>A	p.Thr127Asn	p.T127N	ENST00000307046	NM_001111285.1	127	aCc/aAc																																																																														
TBX3	0	MSKCC	GRCh37	12	115110017	115110017	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	126	944	0	ENST00000257566.3:c.1861A>T	p.Ser621Cys	p.S621C	ENST00000257566	NM_016569.3	621	Agc/Tgc																																																																														
CDK8	0	MSKCC	GRCh37	13	26911778	26911778	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	64	523	2	ENST00000381527.3:c.203C>A	p.Ala68Glu	p.A68E	ENST00000381527	NM_001260.1	68	gCa/gAa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30046560	30046560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	92	587	0	ENST00000331968.5:c.2623G>A	p.Glu875Lys	p.E875K	ENST00000331968	NM_002742.2	875	Gag/Aag																																																																														
MAX	0	MSKCC	GRCh37	14	65544628	65544628	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	49	446	0	ENST00000358664.4:c.295+3G>A		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																															
CREBBP	0	MSKCC	GRCh37	16	3786051	3786051	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	212	839	0	ENST00000262367.5:c.4714A>T	p.Ser1572Cys	p.S1572C	ENST00000262367	NM_004380.2	1572	Agt/Tgt																																																																														
NUP93	0	MSKCC	GRCh37	16	56864531	56864531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	166	546	0	ENST00000308159.5:c.1019G>C	p.Arg340Pro	p.R340P	ENST00000308159	NM_014669.4	340	cGa/cCa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41223042	41223042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	99	710	0	ENST00000357654.3:c.4889A>G	p.Glu1630Gly	p.E1630G	ENST00000357654	NM_007294.3	1630	gAa/gGa																																																																														
RNF43	0	MSKCC	GRCh37	17	56438224	56438225	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	193	624	2	ENST00000407977.2:c.768_769delGGinsTT	p.Gly257Cys	p.G257C	ENST00000407977		256	cgGGgt/cgTTgt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5211673	5211673	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	141	622	0	ENST00000357368.4:c.5162G>T	p.Arg1721Leu	p.R1721L	ENST00000357368	NM_002850.3	1721	cGg/cTg																																																																														
POLD1	0	MSKCC	GRCh37	19	50906783	50906783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	148	998	1	ENST00000440232.2:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000440232	NM_002691.3	391	Gac/Aac																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25468911	25468911	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	306	817	0	ENST00000264709.3:c.1452delG	p.Gln485ArgfsTer166	p.Q485Rfs*166	ENST00000264709	NM_175629.2	484	cgG/cg																																																																														
ERCC3	0	MSKCC	GRCh37	2	128028923	128028923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	90	641	0	ENST00000285398.2:c.1934G>C	p.Arg645Pro	p.R645P	ENST00000285398	NM_000122.1	645	cGa/cCa																																																																														
IRS1	0	MSKCC	GRCh37	2	227660271	227660271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	87	470	1	ENST00000305123.5:c.3184G>T	p.Gly1062Cys	p.G1062C	ENST00000305123	NM_005544.2	1062	Ggc/Tgc																																																																														
IRS1	0	MSKCC	GRCh37	2	227661380	227661380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	118	438	0	ENST00000305123.5:c.2075G>T	p.Gly692Val	p.G692V	ENST00000305123	NM_005544.2	692	gGg/gTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713377	40713377	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	193	637	0	ENST00000373198.4:c.4138G>C	p.Glu1380Gln	p.E1380Q	ENST00000373198	NM_133170.3	1380	Gag/Cag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730901	40730901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	158	577	0	ENST00000373198.4:c.3634G>T	p.Asp1212Tyr	p.D1212Y	ENST00000373198	NM_133170.3	1212	Gac/Tac																																																																														
NCOA3	0	MSKCC	GRCh37	20	46262936	46262936	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	196	537	0	ENST00000371998.3:c.1109A>T	p.Gln370Leu	p.Q370L	ENST00000371998		370	cAg/cTg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62292814	62292814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	61	304	0	ENST00000508582.2:c.266G>T	p.Trp89Leu	p.W89L	ENST00000508582		89	tGg/tTg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259509	89259509	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	62	384	0	ENST00000336596.2:c.653T>A	p.Met218Lys	p.M218K	ENST00000336596	NM_005233.5	218	aTg/aAg																																																																														
GSK3B	0	MSKCC	GRCh37	3	119666128	119666128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	43	537	0	ENST00000316626.5:c.353C>A	p.Ser118Tyr	p.S118Y	ENST00000316626		118	tCc/tAc																																																																														
GATA2	0	MSKCC	GRCh37	3	128199939	128199939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	61	391	0	ENST00000341105.2:c.1366C>A	p.Pro456Thr	p.P456T	ENST00000341105	NM_032638.4	456	Ccg/Acg																																																																														
SOX2	0	MSKCC	GRCh37	3	181430645	181430645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	136	527	0	ENST00000325404.1:c.497G>T	p.Trp166Leu	p.W166L	ENST00000325404	NM_003106.3	166	tGg/tTg																																																																														
TP63	0	MSKCC	GRCh37	3	189456518	189456518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	153	540	2	ENST00000264731.3:c.279G>T	p.Met93Ile	p.M93I	ENST00000264731	NM_003722.4	93	atG/atT																																																																														
EPHA5	0	MSKCC	GRCh37	4	66231729	66231729	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	45	533	1	ENST00000273854.3:c.1971G>T	p.Glu657Asp	p.E657D	ENST00000273854	NM_004439.5	657	gaG/gaT																																																																														
INPP4B	0	MSKCC	GRCh37	4	143043316	143043316	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	103	570	0	ENST00000262992.4:c.2100A>T	p.Lys700Asn	p.K700N	ENST00000262992	NM_001101669.1	700	aaA/aaT																																																																														
INPP4B	0	MSKCC	GRCh37	4	143094911	143094911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	166	524	1	ENST00000262992.4:c.1233G>T	p.Lys411Asn	p.K411N	ENST00000262992	NM_001101669.1	411	aaG/aaT																																																																														
FAT1	0	MSKCC	GRCh37	4	187525133	187525133	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	120	374	0	ENST00000441802.2:c.10549-2A>T		p.X3517_splice	ENST00000441802	NM_005245.3	3517																																																																															
IL7R	0	MSKCC	GRCh37	5	35876268	35876268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	181	533	0	ENST00000303115.3:c.1060G>T	p.Val354Leu	p.V354L	ENST00000303115	NM_002185.3	354	Gta/Tta																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527580	157527580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	260	635	0	ENST00000346085.5:c.5305G>T	p.Asp1769Tyr	p.D1769Y	ENST00000346085	NM_020732.3	1769	Gac/Tac																																																																														
ETV1	0	MSKCC	GRCh37	7	13971315	13971315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	158	438	0	ENST00000405192.2:c.614G>T	p.Arg205Met	p.R205M	ENST00000405192	NM_001163147.1	205	aGg/aTg																																																																														
INHBA	0	MSKCC	GRCh37	7	41729460	41729460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	81	516	1	ENST00000242208.4:c.1069C>A	p.His357Asn	p.H357N	ENST00000242208	NM_002192.2	357	Cat/Aat																																																																														
INHBA	0	MSKCC	GRCh37	7	41729999	41729999	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	220	585	0	ENST00000242208.4:c.530A>T	p.Gln177Leu	p.Q177L	ENST00000242208	NM_002192.2	177	cAg/cTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151893043	151893043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	93	514	1	ENST00000262189.6:c.4327G>A	p.Asp1443Asn	p.D1443N	ENST00000262189	NM_170606.2	1443	Gac/Aac																																																																														
RECQL4	0	MSKCC	GRCh37	8	145742147	145742147	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	50	397	0	ENST00000428558.2:c.356C>T	p.Ala119Val	p.A119V	ENST00000428558	NM_004260.3	119	gCc/gTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8319966	8319966	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	54	289	0	ENST00000356435.5:c.5535C>G	p.Ser1845Arg	p.S1845R	ENST00000356435		1845	agC/agG																																																																														
PTPRD	0	MSKCC	GRCh37	9	8633452	8633452	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	96	441	2	ENST00000356435.5:c.217G>T	p.Glu73Ter	p.E73*	ENST00000356435		73	Gag/Tag																																																																														
NTRK2	0	MSKCC	GRCh37	9	87342662	87342662	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	210	795	0	ENST00000277120.3:c.947A>G	p.Gln316Arg	p.Q316R	ENST00000277120		316	cAg/cGg																																																																														
XIAP	0	MSKCC	GRCh37	X	123019521	123019521	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	72	491	0	ENST00000355640.3:c.9T>A	p.Phe3Leu	p.F3L	ENST00000355640		3	ttT/ttA																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	265	424	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
KIT	0	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	2209	437	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30066765	30066765	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	95	482	0	ENST00000331968.5:c.2366T>G	p.Ile789Arg	p.I789R	ENST00000331968	NM_002742.2	789	aTa/aGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	339	659	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0015980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	251	635	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
INSR	0	MSKCC	GRCh37	19	7168069	7168069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	407	657	1	ENST00000302850.5:c.1520C>A	p.Thr507Lys	p.T507K	ENST00000302850	NM_000208.2	507	aCa/aAa																																																																														
MET	0	MSKCC	GRCh37	7	116403116	116403116	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45440991		P-0015980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	98	387	1	ENST00000397752.3:c.2377C>T	p.Arg793Cys	p.R793C	ENST00000397752	NM_000245.2	793	Cgc/Tgc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123298141	123298141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	78	673	0	ENST00000358487.5:c.713G>A	p.Gly238Glu	p.G238E	ENST00000358487	NM_000141.4	238	gGg/gAg																																																																														
VHL	0	MSKCC	GRCh37	3	10183750	10183750	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	172	704	0	ENST00000256474.2:c.220delG	p.Val74SerfsTer85	p.V74Sfs*85	ENST00000256474	NM_000551.3	73	caG/ca																																																																														
SETD2	0	MSKCC	GRCh37	3	47088106	47088107	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0015983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	50	418	0	ENST00000409792.3:c.6968_6969delAT	p.Tyr2323CysfsTer45	p.Y2323Cfs*45	ENST00000409792	NM_014159.6	2323	tAT/t																																																																														
BAP1	0	MSKCC	GRCh37	3	52441261	52441261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	116	525	0	ENST00000460680.1:c.509T>C	p.Phe170Ser	p.F170S	ENST00000460680	NM_004656.3	170	tTt/tCt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52595828	52595828	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	108	567	0	ENST00000394830.3:c.4087delA	p.Thr1363GlnfsTer17	p.T1363Qfs*17	ENST00000394830	NM_018313.4	1363	Aca/ca																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271218	26271218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	29	427	0	ENST00000305910.3:c.395G>A	p.Arg132His	p.R132H	ENST00000305910	NM_003534.2	132	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	1350	763	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	0	MSKCC	GRCh37	19	1220395	1220395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	886	674	2	ENST00000326873.7:c.488G>T	p.Gly163Val	p.G163V	ENST00000326873	NM_000455.4	163	gGc/gTc																																																																														
ATM	0	MSKCC	GRCh37	11	108158325	108158325	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	241	392	0	ENST00000278616.4:c.3994-2A>G		p.X1332_splice	ENST00000278616	NM_000051.3	1332																																																																															
EPHA3	0	MSKCC	GRCh37	3	89390971	89390971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	333	614	0	ENST00000336596.2:c.1037G>A	p.Ser346Asn	p.S346N	ENST00000336596	NM_005233.5	346	aGt/aAt																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149513470	149513470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	393	686	0	ENST00000261799.4:c.733T>A	p.Phe245Ile	p.F245I	ENST00000261799	NM_002609.3	245	Ttc/Atc																																																																														
RBM10	0	MSKCC	GRCh37	X	47039638	47039638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	525	825	0	ENST00000329236.7:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000329236	NM_001204466.1	286	Cag/Tag																																																																														
MED12	0	MSKCC	GRCh37	X	70344860	70344860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	405	712	1	ENST00000374080.3:c.2090G>A	p.Gly697Asp	p.G697D	ENST00000374080		697	gGc/gAc																																																																														
BTK	0	MSKCC	GRCh37	X	100630303	100630303	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	155	243	0	ENST00000308731.7:c.-30-1G>T		p.X10_splice	ENST00000308731	NM_000061.2	10																																																																															
STAG2	0	MSKCC	GRCh37	X	123179126	123179126	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	337	668	0	ENST00000218089.9:c.575A>T	p.Tyr192Phe	p.Y192F	ENST00000218089	NM_001042749.1	192	tAt/tTt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15285041	15285041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	1229	479	0	ENST00000263388.2:c.4574T>C	p.Leu1525Pro	p.L1525P	ENST00000263388	NM_000435.2	1525	cTg/cCg																																																																														
CARD11	0	MSKCC	GRCh37	7	2959247	2959247	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	81	364	0	ENST00000396946.4:c.2270-1G>T		p.X757_splice	ENST00000396946	NM_032415.4	757																																																																															
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0015991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	86	243	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
AR	0	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2503	913	235	1	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
APC	0	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	200	488	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																														
JAK1	0	MSKCC	GRCh37	1	65306928	65306928	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0015991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	178	366	0	ENST00000342505.4:c.2649G>C	p.Glu883Asp	p.E883D	ENST00000342505	NM_002227.2	883	gaG/gaC																																																																														
IGF1R	0	MSKCC	GRCh37	15	99460038	99460038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	213	431	2	ENST00000268035.6:c.2134G>A	p.Glu712Lys	p.E712K	ENST00000268035	NM_000875.3	712	Gag/Aag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222383	2222383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	72	539	3	ENST00000398665.3:c.3215G>A	p.Arg1072His	p.R1072H	ENST00000398665	NM_032482.2	1072	cGt/cAt																																																																														
CHEK2	0	MSKCC	GRCh37	22	29099492	29099492	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	204	580	1	ENST00000328354.6:c.908+1G>A		p.X303_splice	ENST00000328354	NM_007194.3	303																																																																															
PIK3CG	0	MSKCC	GRCh37	7	106509592	106509592	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	135	572	0	ENST00000359195.3:c.1586T>A	p.Leu529Gln	p.L529Q	ENST00000359195	NM_002649.2	529	cTg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	277	525	1	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106817	27106817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	498	448	0	ENST00000324856.7:c.6428G>T	p.Arg2143Leu	p.R2143L	ENST00000324856	NM_006015.4	2143	cGc/cTc																																																																														
FLT1	0	MSKCC	GRCh37	13	29001293	29001293	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C			P-0016000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	147	275	0	ENST00000282397.4:c.1436+3A>G		p.X479_splice	ENST00000282397	NM_002019.4	479																																																																															
RB1	0	MSKCC	GRCh37	13	48951172	48951172	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0016000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	204	381	0	ENST00000267163.4:c.1332+2T>C		p.X444_splice	ENST00000267163	NM_000321.2	444																																																																															
DNMT3A	0	MSKCC	GRCh37	2	25469137	25469137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	331	631	1	ENST00000264709.3:c.1321G>T	p.Val441Leu	p.V441L	ENST00000264709	NM_175629.2	441	Gtg/Ttg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1805516	1805516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	305	658	0	ENST00000260795.2:c.1028A>G	p.Asn343Ser	p.N343S	ENST00000260795		343	aAt/aGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151882680	151882680	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	326	452	0	ENST00000262189.6:c.5045G>A	p.Trp1682Ter	p.W1682*	ENST00000262189	NM_170606.2	1682	tGg/tAg																																																																														
NBN	0	MSKCC	GRCh37	8	90993110	90993110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	228	392	0	ENST00000265433.3:c.332A>G	p.Glu111Gly	p.E111G	ENST00000265433	NM_002485.4	111	gAg/gGg																																																																														
JAK2	0	MSKCC	GRCh37	9	5050743	5050743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	274	467	0	ENST00000381652.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000381652	NM_004972.3	176	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	16	704	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	80	420	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RHOA	0	MSKCC	GRCh37	3	49413010	49413010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	136	681	1	ENST00000418115.1:c.13C>T	p.Arg5Trp	p.R5W	ENST00000418115	NM_001664.2	5	Cgg/Tgg																																																																														
MED12	0	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	39	677	1	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16075122	16075122	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	122	240	0	ENST00000268712.3:c.430A>T	p.Lys144Ter	p.K144*	ENST00000268712	NM_006311.3	144	Aag/Tag																																																																														
CDH1	0	MSKCC	GRCh37	16	68842656	68842657	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	135	683	0	ENST00000261769.5:c.597_598dup	p.Pro200HisfsTer16	p.P200Hfs*16	ENST00000261769	NM_004360.3	198	gac/gACac																																																																														
GATA3	0	MSKCC	GRCh37	10	8115710	8115711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	66	556	0	ENST00000346208.3:c.1059_1060dup	p.Leu354ProfsTer2	p.L354Pfs*2	ENST00000346208		352	-/CC																																																																														
TBX3	0	MSKCC	GRCh37	12	115115416	115115416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	181	647	1	ENST00000257566.3:c.910C>T	p.Arg304Trp	p.R304W	ENST00000257566	NM_016569.3	304	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	26	320	3	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
MYC	0	MSKCC	GRCh37	8	128753008	128753008	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	145	446	0	ENST00000377970.2:c.1169T>G	p.Phe390Cys	p.F390C	ENST00000377970	NM_002467.4	390	tTt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	431	688	0	ENST00000269305.4:c.406C>G	p.Gln136Glu	p.Q136E	ENST00000269305	NM_001126112.2	136	Caa/Gaa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482425	56482425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	629	387	0	ENST00000267101.3:c.973G>A	p.Gly325Arg	p.G325R	ENST00000267101	NM_001982.3	325	Gga/Aga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	41	443	0	ENST00000263967.3:c.1634A>C	p.Glu545Ala	p.E545A	ENST00000263967	NM_006218.2	545	gAg/gCg																																																																														
NEGR1	0	MSKCC	GRCh37	1	72076785	72076785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	116	419	0	ENST00000357731.5:c.712G>A	p.Gly238Arg	p.G238R	ENST00000357731	NM_173808.2	238	Gga/Aga																																																																														
NRAS	0	MSKCC	GRCh37	1	115251272	115251272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	45	329	0	ENST00000369535.4:c.454G>A	p.Val152Ile	p.V152I	ENST00000369535	NM_002524.4	152	Gtt/Att																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	114	432	0				ENST00000310581	NM_198253.2																																																																																
RECQL4	0	MSKCC	GRCh37	8	145737107	145737109	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0016006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	207	492	0	ENST00000428558.2:c.3457_3459delGAG	p.Glu1153del	p.E1153del	ENST00000428558	NM_004260.3	1153	GAG/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	330	523	4	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CBL	0	MSKCC	GRCh37	11	119148936	119148936	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	344	533	0	ENST00000264033.4:c.1156G>T	p.Glu386Ter	p.E386*	ENST00000264033	NM_005188.3	386	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7579515	7579524	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCTTCAGT	GGTCTTCAGT	-			P-0016007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	195	695	0	ENST00000269305.4:c.163_172del	p.Thr55GlnfsTer65	p.T55Qfs*65	ENST00000269305	NM_001126112.2	55	ACTGAAGACCca/ca																																																																														
MED12	0	MSKCC	GRCh37	X	70339953	70339962	+	frameshift_variant	Frame_Shift_Del	DEL	GACCTGTGCC	GACCTGTGCC	-			P-0016007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	38	440	0	ENST00000374080.3:c.486_495del	p.Met162IlefsTer55	p.M162Ifs*55	ENST00000374080		162	atGACCTGTGCC/at																																																																														
JAK1	0	MSKCC	GRCh37	1	65330628	65330628	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	288	351	0	ENST00000342505.4:c.1018A>T	p.Lys340Ter	p.K340*	ENST00000342505	NM_002227.2	340	Aaa/Taa																																																																														
CHEK2	0	MSKCC	GRCh37	22	29120968	29120968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	224	419	0	ENST00000328354.6:c.589A>G	p.Lys197Glu	p.K197E	ENST00000328354	NM_007194.3	197	Aaa/Gaa																																																																														
MST1R	0	MSKCC	GRCh37	3	49940079	49940079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	249	538	6	ENST00000296474.3:c.964C>T	p.Arg322Trp	p.R322W	ENST00000296474	NM_002447.2	322	Cgg/Tgg																																																																														
TERT	0	MSKCC	GRCh37	5	1295382	1295382	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0016008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	100	241	0				ENST00000310581	NM_198253.2																																																																																
ROS1	0	MSKCC	GRCh37	6	117662622	117662622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	262	424	0	ENST00000368508.3:c.4843A>G	p.Asn1615Asp	p.N1615D	ENST00000368508	NM_002944.2	1615	Aat/Gat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	75	431	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0016009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	88	553	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0016009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	119	660	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CUL3	0	MSKCC	GRCh37	2	225346641	225346641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	38	363	0	ENST00000264414.4:c.1997C>T	p.Thr666Ile	p.T666I	ENST00000264414	NM_003590.4	666	aCa/aTa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0016011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	89	473	3	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	55	424	0	ENST00000342988.3:c.1067C>A	p.Pro356His	p.P356H	ENST00000342988	NM_005359.5	356	cCt/cAt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5206802	5206802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	39	648	0	ENST00000357368.4:c.5830G>A	p.Asp1944Asn	p.D1944N	ENST00000357368	NM_002850.3	1944	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	392	485	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
FAT1	0	MSKCC	GRCh37	4	187630303	187630303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	255	537	1	ENST00000441802.2:c.679C>T	p.Arg227Cys	p.R227C	ENST00000441802	NM_005245.3	227	Cgt/Tgt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118353158	118353158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	131	543	0	ENST00000534358.1:c.4034A>G	p.Lys1345Arg	p.K1345R	ENST00000534358	NM_005933.3	1345	aAa/aGa																																																																														
SETD2	0	MSKCC	GRCh37	3	47163928	47163928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	115	348	0	ENST00000409792.3:c.2198A>G	p.Asp733Gly	p.D733G	ENST00000409792	NM_014159.6	733	gAt/gGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	263	632	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	222	562	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	137	496	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175525	112175525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	82	346	1	ENST00000257430.4:c.4234G>T	p.Gly1412Ter	p.G1412*	ENST00000257430	NM_000038.5	1412	Gga/Tga																																																																														
KDR	0	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	237	744	1	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376680	118376680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	49	594	0	ENST00000534358.1:c.10073G>A	p.Ser3358Asn	p.S3358N	ENST00000534358	NM_005933.3	3358	aGt/aAt																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66525055	66525055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	48	246	0	ENST00000358598.2:c.814G>A	p.Glu272Lys	p.E272K	ENST00000358598	NM_212471.2	272	Gaa/Aaa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226826	2226826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	246	465	2	ENST00000398665.3:c.4306G>A	p.Gly1436Arg	p.G1436R	ENST00000398665	NM_032482.2	1436	Gga/Aga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	16	568	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
STK11	0	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	164	765	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43720339	43720339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	175	588	1	ENST00000382044.4:c.3703C>T	p.Pro1235Ser	p.P1235S	ENST00000382044	NM_001141980.1	1235	Cct/Tct																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4117509	4117509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	13	261	0	ENST00000262948.5:c.211G>A	p.Asp71Asn	p.D71N	ENST00000262948	NM_030662.3	71	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	117	412	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	383	594	2	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420561	49420561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	107	433	0	ENST00000301067.7:c.15188C>G	p.Ala5063Gly	p.A5063G	ENST00000301067	NM_003482.3	5063	gCc/gGc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103524749	103524749	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	22	190	0	ENST00000355739.4:c.2879+1A>T		p.X960_splice	ENST00000355739	NM_000123.3	960																																																																															
IGF1R	0	MSKCC	GRCh37	15	99500562	99500562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	71	437	0	ENST00000268035.6:c.3995G>T	p.Gly1332Val	p.G1332V	ENST00000268035	NM_000875.3	1332	gGg/gTg																																																																														
ASXL2	0	MSKCC	GRCh37	2	26068349	26068349	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	42	248	0	ENST00000435504.4:c.140+1G>T		p.X47_splice	ENST00000435504		47																																																																															
TP63	0	MSKCC	GRCh37	3	189526261	189526261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	130	438	0	ENST00000264731.3:c.525C>A	p.His175Gln	p.H175Q	ENST00000264731	NM_003722.4	175	caC/caA																																																																														
FAT1	0	MSKCC	GRCh37	4	187510327	187510327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	58	246	0	ENST00000441802.2:c.13186G>T	p.Asp4396Tyr	p.D4396Y	ENST00000441802	NM_005245.3	4396	Gac/Tac																																																																														
PNRC1	0	MSKCC	GRCh37	6	89793535	89793535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	42	312	0	ENST00000336032.3:c.604G>A	p.Gly202Ser	p.G202S	ENST00000336032	NM_006813.2	202	Ggt/Agt																																																																														
LATS1	0	MSKCC	GRCh37	6	150016236	150016236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	45	255	0	ENST00000253339.5:c.470G>T	p.Arg157Ile	p.R157I	ENST00000253339		157	aGa/aTa																																																																														
SMO	0	MSKCC	GRCh37	7	128851547	128851547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	160	512	1	ENST00000249373.3:c.1872G>T	p.Lys624Asn	p.K624N	ENST00000249373	NM_005631.4	624	aaG/aaT																																																																														
NBN	0	MSKCC	GRCh37	8	90993624	90993625	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	69	290	0	ENST00000265433.3:c.298_299delGGinsTT	p.Gly100Leu	p.G100L	ENST00000265433	NM_002485.4	100	GGa/TTa																																																																														
STAG2	0	MSKCC	GRCh37	X	123195088	123195103	+	frameshift_variant	Frame_Shift_Del	DEL	AGCATACCTTGTGGAT	AGCATACCTTGTGGAT	-			P-0016016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	32	297	0	ENST00000218089.9:c.1436_1451delACCTTGTGGATAGCAT	p.Tyr479CysfsTer9	p.Y479Cfs*9	ENST00000218089	NM_001042749.1	477	gcAGCATACCTTGTGGAT/gc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	1866	495	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	378	491	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
KEAP1	0	MSKCC	GRCh37	19	10602872	10602872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	296	752	1	ENST00000171111.5:c.706G>A	p.Asp236Asn	p.D236N	ENST00000171111	NM_203500.1	236	Gac/Aac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11134251	11134251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	238	524	0	ENST00000344626.4:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000344626	NM_003072.3	973	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092983	27092983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	150	303	0	ENST00000324856.7:c.2914G>T	p.Asp972Tyr	p.D972Y	ENST00000324856	NM_006015.4	972	Gat/Tat																																																																														
PGR	0	MSKCC	GRCh37	11	100962553	100962553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	552	454	2	ENST00000325455.5:c.1844G>A	p.Arg615His	p.R615H	ENST00000325455	NM_001202474.3	615	cGc/cAc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67479774	67479774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	199	465	1	ENST00000327367.4:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000327367	NM_005902.3	361	Gag/Aag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40747086	40747087	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	160	415	0	ENST00000373198.4:c.2995_2996delTCinsAA	p.Ser999Asn	p.S999N	ENST00000373198	NM_133170.3	999	TCc/AAc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217261	66217261	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	117	296	2	ENST00000273854.3:c.2354C>G	p.Ser785Cys	p.S785C	ENST00000273854	NM_004439.5	785	tCt/tGt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	96	251	0	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	120	490	0				ENST00000310581	NM_198253.2																																																																																
TNFAIP3	0	MSKCC	GRCh37	6	138198389	138198389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	30	393	0	ENST00000237289.4:c.982G>A	p.Ala328Thr	p.A328T	ENST00000237289	NM_001270507.1	328	Gca/Aca																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449546	149449546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	123	597	0	ENST00000286301.3:c.1400C>T	p.Thr467Met	p.T467M	ENST00000286301	NM_005211.3	467	aCg/aTg																																																																														
MST1R	0	MSKCC	GRCh37	3	49933461	49933461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201953002		P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	139	578	1	ENST00000296474.3:c.2729G>A	p.Arg910Gln	p.R910Q	ENST00000296474	NM_002447.2	910	cGg/cAg																																																																														
GATA3	0	MSKCC	GRCh37	10	8111517	8111517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	75	549	1	ENST00000346208.3:c.1003G>A	p.Asp335Asn	p.D335N	ENST00000346208		335	Gac/Aac																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18552660	18552660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	115	472	0	ENST00000266497.5:c.2071C>T	p.Leu691Phe	p.L691F	ENST00000266497		691	Ctt/Ttt																																																																														
CDK8	0	MSKCC	GRCh37	13	26967593	26967593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	106	505	0	ENST00000381527.3:c.736C>T	p.Pro246Ser	p.P246S	ENST00000381527	NM_001260.1	246	Cct/Tct																																																																														
RAD51B	0	MSKCC	GRCh37	14	68331790	68331791	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	110	461	0	ENST00000487270.1:c.386_387delCCinsTT	p.Thr129Ile	p.T129I	ENST00000487270	NM_133509.3	129	aCC/aTT																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858040	9858040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	62	397	0	ENST00000330684.3:c.3361G>T	p.Asp1121Tyr	p.D1121Y	ENST00000330684	NM_001134407.1	1121	Gat/Tat																																																																														
CDK12	0	MSKCC	GRCh37	17	37627404	37627404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	202	563	0	ENST00000447079.4:c.1319C>T	p.Ser440Leu	p.S440L	ENST00000447079	NM_015083.1	440	tCa/tTa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097604	11097604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	118	615	1	ENST00000344626.4:c.784C>T	p.Pro262Ser	p.P262S	ENST00000344626	NM_003072.3	262	Ccc/Tcc																																																																														
TP63	0	MSKCC	GRCh37	3	189455535	189455536	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	47	366	2	ENST00000264731.3:c.69_70delAGinsTA	p.Glu24Lys	p.E24K	ENST00000264731	NM_003722.4	23	gtAGaa/gtTAaa																																																																														
IRF4	0	MSKCC	GRCh37	6	397158	397158	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	61	435	0	ENST00000380956.4:c.543C>G	p.Tyr181Ter	p.Y181*	ENST00000380956	NM_001195286.1	181	taC/taG																																																																														
PTPRD	0	MSKCC	GRCh37	9	8331648	8331648	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	61	402	0	ENST00000356435.5:c.5468T>G	p.Phe1823Cys	p.F1823C	ENST00000356435		1823	tTc/tGc																																																																														
TSC1	0	MSKCC	GRCh37	9	135797328	135797328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	43	287	0	ENST00000298552.3:c.541C>T	p.His181Tyr	p.H181Y	ENST00000298552	NM_001162426.1	181	Cat/Tat																																																																														
STK11	0	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	78	493	1	ENST00000326873.7:c.598-2A>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																															
TP53	0	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0016020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	77	440	0	ENST00000269305.4:c.97-2A>G		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
RPTOR	0	MSKCC	GRCh37	17	78921151	78921151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	122	308	0	ENST00000306801.3:c.3265G>A	p.Asp1089Asn	p.D1089N	ENST00000306801	NM_020761.2	1089	Gac/Aac																																																																														
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	171	464	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	357	713	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427279	49427279	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	122	293	1	ENST00000301067.7:c.11209C>T	p.Gln3737Ter	p.Q3737*	ENST00000301067	NM_003482.3	3737	Cag/Tag																																																																														
MGA	0	MSKCC	GRCh37	15	42003399	42003399	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	76	357	0	ENST00000219905.7:c.2936A>T	p.Gln979Leu	p.Q979L	ENST00000219905	NM_001164273.1	979	cAg/cTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9892235	9892235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	144	488	1	ENST00000330684.3:c.2255G>A	p.Ser752Asn	p.S752N	ENST00000330684	NM_001134407.1	752	aGt/aAt																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39573243	39573243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	65	243	0	ENST00000262039.4:c.724G>A	p.Glu242Lys	p.E242K	ENST00000262039	NM_002647.2	242	Gaa/Aaa																																																																														
MALT1	0	MSKCC	GRCh37	18	56409138	56409138	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	84	302	1	ENST00000348428.3:c.1645G>T	p.Glu549Ter	p.E549*	ENST00000348428	NM_006785.3	549	Gag/Tag																																																																														
POLD1	0	MSKCC	GRCh37	19	50919004	50919004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	100	548	0	ENST00000440232.2:c.2741G>A	p.Ser914Asn	p.S914N	ENST00000440232	NM_002691.3	914	aGt/aAt																																																																														
ALK	0	MSKCC	GRCh37	2	29754905	29754905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	80	365	1	ENST00000389048.3:c.1030C>A	p.His344Asn	p.H344N	ENST00000389048	NM_004304.4	344	Cac/Aac																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356240	66356240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	192	472	1	ENST00000273854.3:c.1257C>A	p.Ser419Arg	p.S419R	ENST00000273854	NM_004439.5	419	agC/agA																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467410	66467410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	27	162	0	ENST00000273854.3:c.859G>A	p.Gly287Arg	p.G287R	ENST00000273854	NM_004439.5	287	Ggg/Agg																																																																														
ETV1	0	MSKCC	GRCh37	7	13971239	13971239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	140	358	0	ENST00000405192.2:c.690G>T	p.Glu230Asp	p.E230D	ENST00000405192	NM_001163147.1	230	gaG/gaT																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	166	442	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849051	156849051	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	196	587	0	ENST00000524377.1:c.1943A>C	p.His648Pro	p.H648P	ENST00000524377	NM_002529.3	648	cAc/cCc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914218	32914218	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	69	397	0	ENST00000380152.3:c.5726A>T	p.Asp1909Val	p.D1909V	ENST00000380152		1909	gAt/gTt																																																																														
MAX	0	MSKCC	GRCh37	14	65543370	65543370	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	33	456	0	ENST00000358664.4:c.307G>T	p.Glu103Ter	p.E103*	ENST00000358664	NM_002382.4	103	Gag/Tag																																																																														
BRCA1	0	MSKCC	GRCh37	17	41228556	41228556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	120	535	0	ENST00000357654.3:c.4433A>G	p.Glu1478Gly	p.E1478G	ENST00000357654	NM_007294.3	1478	gAg/gGg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41268739	41268739	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	77	341	0	ENST00000349496.5:c.977A>C	p.Asn326Thr	p.N326T	ENST00000349496	NM_001904.3	326	aAt/aCt																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045814	26045814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	97	292	0	ENST00000540144.1:c.176C>G	p.Thr59Ser	p.T59S	ENST00000540144	NM_003531.2	59	aCc/aGc																																																																														
SPEN	0	MSKCC	GRCh37	1	16254663	16254663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	146	523	0	ENST00000375759.3:c.1928C>T	p.Pro643Leu	p.P643L	ENST00000375759	NM_015001.2	643	cCt/cTt																																																																														
GATA3	0	MSKCC	GRCh37	10	8100409	8100409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	361	642	1	ENST00000346208.3:c.383G>A	p.Gly128Glu	p.G128E	ENST00000346208		128	gGg/gAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425728	49425728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	534	518	0	ENST00000301067.7:c.12760C>T	p.Gln4254Ter	p.Q4254*	ENST00000301067	NM_003482.3	4254	Cag/Tag																																																																														
GLI1	0	MSKCC	GRCh37	12	57858621	57858621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	590	434	1	ENST00000228682.2:c.359C>T	p.Ser120Phe	p.S120F	ENST00000228682	NM_005269.2	120	tCc/tTc																																																																														
PTPN11	0	MSKCC	GRCh37	12	112915797	112915797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	447	357	0	ENST00000351677.2:c.1070C>T	p.Thr357Met	p.T357M	ENST00000351677	NM_002834.3	357	aCg/aTg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43738686	43738686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	297	474	0	ENST00000382044.4:c.2939C>T	p.Ser980Phe	p.S980F	ENST00000382044	NM_001141980.1	980	tCt/tTt																																																																														
NF1	0	MSKCC	GRCh37	17	29559090	29559090	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	46	31	0	ENST00000358273.4:c.3198-1G>A		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																															
NF1	0	MSKCC	GRCh37	17	29560043	29560043	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	130	232	0	ENST00000358273.4:c.3520C>T	p.Gln1174Ter	p.Q1174*	ENST00000358273	NM_001042492.2	1174	Cag/Tag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2220180	2220180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	342	607	0	ENST00000398665.3:c.2765C>T	p.Ala922Val	p.A922V	ENST00000398665	NM_032482.2	922	gCc/gTc																																																																														
ALK	0	MSKCC	GRCh37	2	30143072	30143072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	378	680	1	ENST00000389048.3:c.454G>A	p.Glu152Lys	p.E152K	ENST00000389048	NM_004304.4	152	Gag/Aag																																																																														
TET2	0	MSKCC	GRCh37	4	106158215	106158215	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111678678		P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	198	326	0	ENST00000380013.4:c.3116C>T	p.Ser1039Leu	p.S1039L	ENST00000380013	NM_001127208.2	1039	tCg/tTg																																																																														
TERT	0	MSKCC	GRCh37	5	1253870	1253871	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	208	510	2	ENST00000310581.5:c.3371_3372delCCinsTT	p.Pro1124Leu	p.P1124L	ENST00000310581	NM_198253.2	1124	cCC/cTT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	159	382	0				ENST00000310581	NM_198253.2																																																																																
PDGFRB	0	MSKCC	GRCh37	5	149515291	149515291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	241	474	0	ENST00000261799.4:c.191G>A	p.Arg64Gln	p.R64Q	ENST00000261799	NM_002609.3	64	cGg/cAg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522605	176522605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	320	593	0	ENST00000292408.4:c.1702C>T	p.Pro568Ser	p.P568S	ENST00000292408	NM_213647.1	568	Cca/Tca																																																																														
MDC1	0	MSKCC	GRCh37	6	30672626	30672626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	217	406	0	ENST00000376406.3:c.4334C>T	p.Pro1445Leu	p.P1445L	ENST00000376406	NM_014641.2	1445	cCt/cTt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170061	32170061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	365	682	0	ENST00000375023.3:c.3547G>A	p.Gly1183Arg	p.G1183R	ENST00000375023	NM_004557.3	1183	Gga/Aga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157192782	157192783	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	192	372	1	ENST00000346085.5:c.1772_1773delGGinsAA	p.Trp591Ter	p.W591*	ENST00000346085	NM_020732.3	591	tGG/tAA																																																																														
EGFR	0	MSKCC	GRCh37	7	55220269	55220269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	191	595	0	ENST00000275493.2:c.659C>T	p.Ser220Phe	p.S220F	ENST00000275493	NM_005228.3	220	tCc/tTc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106526580	106526580	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	74	296	0	ENST00000359195.3:c.2873G>A	p.Gly958Glu	p.G958E	ENST00000359195	NM_002649.2	958	gGa/gAa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878301	151878301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	316	445	0	ENST00000262189.6:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000262189	NM_170606.2	2215	tCt/tTt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485897	8485897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	142	313	0	ENST00000356435.5:c.2920C>T	p.Pro974Ser	p.P974S	ENST00000356435		974	Cca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	403	488	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
STK11	0	MSKCC	GRCh37	19	1221228	1221228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	240	589	1	ENST00000326873.7:c.751G>T	p.Gly251Cys	p.G251C	ENST00000326873	NM_000455.4	251	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	126	632	0	ENST00000269305.4:c.836G>T	p.Gly279Val	p.G279V	ENST00000269305	NM_001126112.2	279	gGg/gTg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600428	10600428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	274	745	0	ENST00000171111.5:c.1427G>T	p.Gly476Val	p.G476V	ENST00000171111	NM_203500.1	476	gGg/gTg																																																																														
ATR	0	MSKCC	GRCh37	3	142286917	142286917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	52	317	0	ENST00000350721.4:c.139G>A	p.Asp47Asn	p.D47N	ENST00000350721	NM_001184.3	47	Gat/Aat																																																																														
ATR	0	MSKCC	GRCh37	3	142286925	142286925	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	58	359	0	ENST00000350721.4:c.131T>A	p.Ile44Lys	p.I44K	ENST00000350721	NM_001184.3	44	aTa/aAa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1940072	1940210	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCCTTTCTTTTCCTTTTGTTGTTCTTTTTCTTTTTTTTTCCTTTTTTTCTTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTAAATAATAGAGAGACACAATCACTGACAAAACGGCCAGAACA	TTTTCCTTTCTTTTCCTTTTGTTGTTCTTTTTCTTTTTTTTTCCTTTTTTTCTTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTAAATAATAGAGAGACACAATCACTGACAAAACGGCCAGAACA	-			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	38	14	0	ENST00000382891.5:c.1675-106_1707delTTTTCCTTTCTTTTCCTTTTGTTGTTCTTTTTCTTTTTTTTTCCTTTTTTTCTTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTAAATAATAGAGAGACACAATCACTGACAAAACGGCCAGAACA		p.X559_splice	ENST00000382891	NM_133335.3	559																																																																															
NOTCH1	0	MSKCC	GRCh37	9	139395252	139395253	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0016029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	205	549	2	ENST00000277541.6:c.5685_5686delGGinsTT	p.Glu1896Ter	p.E1896*	ENST00000277541	NM_017617.3	1895	ctGGag/ctTTag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	258	480	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	255	442	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	107	309	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	82	475	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SOX17	0	MSKCC	GRCh37	8	55370933	55370933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	336	700	0	ENST00000297316.4:c.235G>A	p.Ala79Thr	p.A79T	ENST00000297316	NM_022454.3	79	Gct/Act																																																																														
APC	0	MSKCC	GRCh37	5	112116517	112116517	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	62	354	0	ENST00000257430.4:c.562C>T	p.Gln188Ter	p.Q188*	ENST00000257430	NM_000038.5	188	Caa/Taa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591902	48591902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	137	379	0	ENST00000342988.3:c.1065C>A	p.Asp355Glu	p.D355E	ENST00000342988	NM_005359.5	355	gaC/gaA																																																																														
TP63	0	MSKCC	GRCh37	3	189587133	189587133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	143	418	0	ENST00000264731.3:c.1150G>A	p.Gly384Ser	p.G384S	ENST00000264731	NM_003722.4	384	Ggt/Agt																																																																														
APC	0	MSKCC	GRCh37	5	112175771	112175772	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	253	277	0	ENST00000257430.4:c.4483dup	p.Ser1495LysfsTer19	p.S1495Kfs*19	ENST00000257430	NM_000038.5	1494	gaa/gAaa																																																																														
MED12	0	MSKCC	GRCh37	X	70356454	70356454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	321	358	1	ENST00000374080.3:c.5349G>T	p.Lys1783Asn	p.K1783N	ENST00000374080		1783	aaG/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	161	442	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	285	643	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197402	94197402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	80	450	1	ENST00000323929.3:c.1102G>T	p.Asp368Tyr	p.D368Y	ENST00000323929	NM_005591.3	368	Gac/Tac																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67592115	67592115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	68	293	0	ENST00000274335.5:c.1931G>A	p.Gly644Asp	p.G644D	ENST00000274335		644	gGc/gAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47045006	47045006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	286	391	1	ENST00000329236.7:c.2098C>T	p.Gln700Ter	p.Q700*	ENST00000329236	NM_001204466.1	700	Cag/Tag																																																																														
MTOR	0	MSKCC	GRCh37	1	11319330	11319330	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	165	481	0	ENST00000361445.4:c.137A>T	p.His46Leu	p.H46L	ENST00000361445	NM_004958.3	46	cAc/cTc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849848	156849848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	158	458	3	ENST00000524377.1:c.2104C>T	p.Arg702Cys	p.R702C	ENST00000524377	NM_002529.3	702	Cgt/Tgt																																																																														
NUF2	0	MSKCC	GRCh37	1	163306558	163306558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	80	447	3	ENST00000271452.3:c.355C>T	p.Arg119Trp	p.R119W	ENST00000271452	NM_145697.2	119	Cgg/Tgg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118342446	118342446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	44	309	0	ENST00000534358.1:c.572C>T	p.Ser191Leu	p.S191L	ENST00000534358	NM_005933.3	191	tCa/tTa																																																																														
CCND2	0	MSKCC	GRCh37	12	4398085	4398085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	91	511	0	ENST00000261254.3:c.649G>A	p.Asp217Asn	p.D217N	ENST00000261254	NM_001759.3	217	Gat/Aat																																																																														
ARID2	0	MSKCC	GRCh37	12	46244780	46244780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	118	558	2	ENST00000334344.6:c.2874G>T	p.Gln958His	p.Q958H	ENST00000334344	NM_152641.2	958	caG/caT																																																																														
POLE	0	MSKCC	GRCh37	12	133225983	133225983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	330	629	0	ENST00000320574.5:c.3914G>T	p.Gly1305Val	p.G1305V	ENST00000320574	NM_006231.2	1305	gGg/gTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435916	110435916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	87	654	0	ENST00000375856.3:c.2485C>T	p.Pro829Ser	p.P829S	ENST00000375856	NM_003749.2	829	Ccc/Tcc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420266	88420266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	79	554	1	ENST00000360948.2:c.2420G>T	p.Trp807Leu	p.W807L	ENST00000360948	NM_001012338.2	807	tGg/tTg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88679144	88679144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	138	361	0	ENST00000360948.2:c.893C>A	p.Ala298Asp	p.A298D	ENST00000360948	NM_001012338.2	298	gCc/gAc																																																																														
CD79B	0	MSKCC	GRCh37	17	62007210	62007210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	304	598	0	ENST00000392795.3:c.472C>A	p.Leu158Met	p.L158M	ENST00000392795	NM_001039933.1	158	Ctg/Atg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533123	63533123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	231	528	0	ENST00000307078.5:c.1771G>T	p.Ala591Ser	p.A591S	ENST00000307078	NM_004655.3	591	Gcc/Tcc																																																																														
SOX9	0	MSKCC	GRCh37	17	70119075	70119075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	229	418	1	ENST00000245479.2:c.647C>A	p.Ser216Tyr	p.S216Y	ENST00000245479	NM_000346.3	216	tCc/tAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593479	48593479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	72	325	0	ENST00000342988.3:c.1230G>T	p.Gln410His	p.Q410H	ENST00000342988	NM_005359.5	410	caG/caT																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867806	45867806	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	93	611	0	ENST00000391945.4:c.595-1G>T		p.X199_splice	ENST00000391945	NM_000400.3	199																																																																															
MSH6	0	MSKCC	GRCh37	2	48030583	48030583	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	58	308	0	ENST00000234420.5:c.3197A>G	p.Tyr1066Cys	p.Y1066C	ENST00000234420	NM_000179.2	1066	tAt/tGt																																																																														
MST1R	0	MSKCC	GRCh37	3	49935072	49935072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	203	669	0	ENST00000296474.3:c.1927G>A	p.Glu643Lys	p.E643K	ENST00000296474	NM_002447.2	643	Gag/Aag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52595914	52595914	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	251	608	0	ENST00000394830.3:c.4001A>C	p.Tyr1334Ser	p.Y1334S	ENST00000394830	NM_018313.4	1334	tAc/tCc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134898707	134898707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	122	269	0	ENST00000398015.3:c.1765C>A	p.Pro589Thr	p.P589T	ENST00000398015	NM_004441.4	589	Cca/Aca																																																																														
INPP4B	0	MSKCC	GRCh37	4	143159041	143159041	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	78	306	0	ENST00000262992.4:c.812T>A	p.Leu271His	p.L271H	ENST00000262992	NM_001101669.1	271	cTt/cAt																																																																														
TERT	0	MSKCC	GRCh37	5	1295441	1295441	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	28	37	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	0	MSKCC	GRCh37	5	39021187	39021187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	80	395	0	ENST00000357387.3:c.149G>A	p.Gly50Glu	p.G50E	ENST00000357387	NM_152756.3	50	gGa/gAa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522554	176522554	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	218	627	0	ENST00000292408.4:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000292408	NM_213647.1	551	Gag/Tag																																																																														
HGF	0	MSKCC	GRCh37	7	81386559	81386559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	186	493	0	ENST00000222390.5:c.428C>A	p.Thr143Asn	p.T143N	ENST00000222390	NM_000601.4	143	aCt/aAt																																																																														
PREX2	0	MSKCC	GRCh37	8	69046489	69046489	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	253	509	0	ENST00000288368.4:c.3962A>C	p.Gln1321Pro	p.Q1321P	ENST00000288368	NM_024870.2	1321	cAg/cCg																																																																														
GNAQ	0	MSKCC	GRCh37	9	80430635	80430635	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	80	292	0	ENST00000286548.4:c.373G>T	p.Glu125Ter	p.E125*	ENST00000286548	NM_002072.3	125	Gag/Tag																																																																														
ABL1	0	MSKCC	GRCh37	9	133729492	133729492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	128	504	0	ENST00000318560.5:c.121G>T	p.Gly41Cys	p.G41C	ENST00000318560	NM_005157.4	41	Ggt/Tgt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390923	139390923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	134	725	0	ENST00000277541.6:c.7268C>T	p.Ser2423Leu	p.S2423L	ENST00000277541	NM_017617.3	2423	tCa/tTa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53247581	53247581	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	162	182	0	ENST00000375401.3:c.229-1G>T		p.X77_splice	ENST00000375401	NM_004187.3	77																																																																															
STK11	0	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	77	425	0	ENST00000326873.7:c.465-1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	47	524	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
GLI1	0	MSKCC	GRCh37	12	57861822	57861822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	80	591	1	ENST00000228682.2:c.1123G>T	p.Asp375Tyr	p.D375Y	ENST00000228682	NM_005269.2	375	Gat/Tat																																																																														
AKT3	0	MSKCC	GRCh37	1	243776996	243776996	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	45	534	0	ENST00000263826.5:c.673A>C	p.Met225Leu	p.M225L	ENST00000263826	NM_005465.4	225	Atg/Ctg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482347	56482347	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	54	449	0	ENST00000267101.3:c.895A>G	p.Thr299Ala	p.T299A	ENST00000267101	NM_001982.3	299	Aca/Gca																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779743	3779743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	52	511	0	ENST00000262367.5:c.5305C>T	p.Arg1769Trp	p.R1769W	ENST00000262367	NM_004380.2	1769	Cgg/Tgg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602688	10602688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	103	633	0	ENST00000171111.5:c.890G>T	p.Cys297Phe	p.C297F	ENST00000171111	NM_203500.1	297	tGc/tTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138486	11138486	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	64	480	0	ENST00000344626.4:c.3242A>C	p.Lys1081Thr	p.K1081T	ENST00000344626	NM_003072.3	1081	aAa/aCa																																																																														
UPF1	0	MSKCC	GRCh37	19	18965693	18965693	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	85	655	0	ENST00000262803.5:c.1271A>T	p.Gln424Leu	p.Q424L	ENST00000262803	NM_002911.3	424	cAg/cTg																																																																														
BCOR	0	MSKCC	GRCh37	X	39931799	39931799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	98	585	0	ENST00000378444.4:c.2800G>C	p.Asp934His	p.D934H	ENST00000378444	NM_001123385.1	934	Gat/Cat																																																																														
MED12	0	MSKCC	GRCh37	X	70345997	70345997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	71	519	0	ENST00000374080.3:c.2534C>T	p.Thr845Met	p.T845M	ENST00000374080		845	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	102	536	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43762215	43762215	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	80	624	0	ENST00000382044.4:c.1230delT	p.Gln411ArgfsTer12	p.Q411Rfs*12	ENST00000382044	NM_001141980.1	410	ttT/tt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	37	676	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TCF3	0	MSKCC	GRCh37	19	1619374	1619374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	64	654	0	ENST00000344749.5:c.1267G>A	p.Gly423Arg	p.G423R	ENST00000344749	NM_001136139.2	423	Ggg/Agg																																																																														
ALK	238	MSKCC	GRCh37	2	30143204	30143204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1268240399		P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	42	485	0	ENST00000389048.3:c.322del	p.Val108SerfsTer20	p.V108Sfs*20	ENST00000389048	NM_004304.4	108	Gtc/tc																																																																														
MYD88	0	MSKCC	GRCh37	3	38180273	38180273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	183	578	0	ENST00000396334.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000396334	NM_002468.4	41	Cga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187630007	187630007	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	126	587	0	ENST00000441802.2:c.975G>C	p.Trp325Cys	p.W325C	ENST00000441802	NM_005245.3	325	tgG/tgC																																																																														
SDHA	0	MSKCC	GRCh37	5	228384	228384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	51	394	0	ENST00000264932.6:c.706G>A	p.Ala236Thr	p.A236T	ENST00000264932	NM_004168.2	236	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	46	364	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225474	26225474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	24	180	0	ENST00000360408.1:c.92C>T	p.Pro31Leu	p.P31L	ENST00000360408	NM_003532.2	31	cCg/cTg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170136	32170136	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	69	673	1	ENST00000375023.3:c.3472C>T	p.Arg1158Ter	p.R1158*	ENST00000375023	NM_004557.3	1158	Cga/Tga																																																																														
HGF	0	MSKCC	GRCh37	7	81372714	81372714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	82	396	0	ENST00000222390.5:c.820C>A	p.Leu274Ile	p.L274I	ENST00000222390	NM_000601.4	274	Ctt/Att																																																																														
RECQL4	9401	MSKCC	GRCh37	8	145737702	145737702	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137853232		P-0016036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	120	543	3	ENST00000428558.2:c.3061C>T	p.Arg1021Trp	p.R1021W	ENST00000428558	NM_004260.3	1021	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0016037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	196	325	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1962801	1962801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	78	516	2	ENST00000382891.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000382891	NM_133335.3	1099	Gag/Aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89712019	89712019	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0016037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	90	191	0	ENST00000371953.3:c.634+3A>C		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
RB1	0	MSKCC	GRCh37	13	48934152	48934152	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	74	219	0	ENST00000267163.4:c.608-1G>T		p.X203_splice	ENST00000267163	NM_000321.2	203																																																																															
TP53	0	MSKCC	GRCh37	17	7577596	7577597	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GTCAGAG			P-0016037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	128	498	0	ENST00000269305.4:c.678_684dup	p.Cys229LeufsTer2	p.C229Lfs*2	ENST00000269305	NM_001126112.2	228	-/CTCTGAC																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188817	32188817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	127	643	0	ENST00000375023.3:c.737G>A	p.Gly246Glu	p.G246E	ENST00000375023	NM_004557.3	246	gGg/gAg																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0016039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	63	371	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
RAD50	0	MSKCC	GRCh37	5	131930617	131930617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	64	377	1	ENST00000265335.6:c.1850G>T	p.Arg617Ile	p.R617I	ENST00000265335		617	aGa/aTa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	423	657	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041630	14041630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	102	429	1	ENST00000311895.7:c.2177G>A	p.Arg726His	p.R726H	ENST00000311895	NM_005236.2	726	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	327	578	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108204641	108204653	+	frameshift_variant	Frame_Shift_Del	DEL	AATTACTAAACTT	AATTACTAAACTT	-			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	51	250	0	ENST00000278616.4:c.7958_7970delTTACTAAACTTAA	p.Ile2653ArgfsTer3	p.I2653Rfs*3	ENST00000278616	NM_000051.3	2652	ccAATTACTAAACTT/cc																																																																														
POLE	0	MSKCC	GRCh37	12	133220131	133220131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	71	729	1	ENST00000320574.5:c.4306C>T	p.Arg1436Trp	p.R1436W	ENST00000320574	NM_006231.2	1436	Cgg/Tgg																																																																														
MGA	0	MSKCC	GRCh37	15	42000300	42000300	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	39	337	0	ENST00000219905.7:c.2321-2A>T		p.X774_splice	ENST00000219905	NM_001164273.1	774																																																																															
AKT2	0	MSKCC	GRCh37	19	40747919	40747919	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	96	647	0	ENST00000392038.2:c.499A>T	p.Ile167Phe	p.I167F	ENST00000392038	NM_001626.4	167	Atc/Ttc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877398	40877398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	69	561	1	ENST00000373198.4:c.2298G>T	p.Met766Ile	p.M766I	ENST00000373198	NM_133170.3	766	atG/atT																																																																														
NF2	0	MSKCC	GRCh37	22	30074272	30074272	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	40	595	0	ENST00000338641.4:c.1534A>G	p.Thr512Ala	p.T512A	ENST00000338641	NM_000268.3	512	Act/Gct																																																																														
FAT1	0	MSKCC	GRCh37	4	187539594	187539594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	61	348	0	ENST00000441802.2:c.8146G>T	p.Val2716Leu	p.V2716L	ENST00000441802	NM_005245.3	2716	Gtg/Ttg																																																																														
CARD11	0	MSKCC	GRCh37	7	2968242	2968242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	71	675	2	ENST00000396946.4:c.1744C>A	p.Pro582Thr	p.P582T	ENST00000396946	NM_032415.4	582	Ccc/Acc																																																																														
HGF	0	MSKCC	GRCh37	7	81335662	81335663	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	128	597	0	ENST00000222390.5:c.1697dup	p.Asn566LysfsTer10	p.N566Kfs*10	ENST00000222390	NM_000601.4	566	aat/aaAt																																																																														
HGF	0	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	66	346	0	ENST00000222390.5:c.1270C>A	p.Arg424Ser	p.R424S	ENST00000222390	NM_000601.4	424	Cgt/Agt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5246048	5246048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	130	282	0	ENST00000357368.4:c.727G>A	p.Val243Met	p.V243M	ENST00000357368	NM_002850.3	243	Gtg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7579870	7579870	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	475	631	1	ENST00000269305.4:c.43del	p.Ser15ValfsTer29	p.S15Vfs*29	ENST00000269305	NM_001126112.2	15	Agt/gt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016618	12016618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	177	338	0	ENST00000353533.5:c.754G>A	p.Gly252Arg	p.G252R	ENST00000353533	NM_003010.3	252	Gga/Aga																																																																														
ETV1	0	MSKCC	GRCh37	7	13971291	13971291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	135	391	0	ENST00000405192.2:c.638G>A	p.Arg213His	p.R213H	ENST00000405192	NM_001163147.1	213	cGc/cAc																																																																														
PREX2	0	MSKCC	GRCh37	8	69002915	69002915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	66	321	2	ENST00000288368.4:c.2215G>A	p.Val739Ile	p.V739I	ENST00000288368	NM_024870.2	739	Gtt/Att																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	306	473	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675071	40675071	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	49	600	0	ENST00000249776.8:c.35N>G	p.Val12Gly	p.V12G	ENST00000249776	NM_033286.3	12	gTt/gGt																																																																														
MST1R	0	MSKCC	GRCh37	3	49936051	49936051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	70	609	1	ENST00000296474.3:c.1619G>A	p.Trp540Ter	p.W540*	ENST00000296474	NM_002447.2	540	tGg/tAg																																																																														
KDR	0	MSKCC	GRCh37	4	55956179	55956180	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0016045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	85	407	0	ENST00000263923.4:c.3135_3136del	p.Cys1045Ter	p.C1045*	ENST00000263923	NM_002253.2	1045	tgTGac/tgac																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	130	304	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0016046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	10	109	1	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923397	9923397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	281	603	0	ENST00000330684.3:c.1890G>A	p.Met630Ile	p.M630I	ENST00000330684	NM_001134407.1	630	atG/atA																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101474	27101568	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGCCCTGCTCCCCTGCCCCGGCCAATGGAGAACCGCACCTCTCCTAGCAAGTCTCCATTCCTGCACTCTGGGATGAAAATGCAGAAGGCAGG	TCCAGCCCTGCTCCCCTGCCCCGGCCAATGGAGAACCGCACCTCTCCTAGCAAGTCTCCATTCCTGCACTCTGGGATGAAAATGCAGAAGGCAGG	-			P-0016046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	78	740	0	ENST00000324856.7:c.4759_4853del	p.Ser1587ProfsTer29	p.S1587Pfs*29	ENST00000324856	NM_006015.4	1586	TCCAGCCCTGCTCCCCTGCCCCGGCCAATGGAGAACCGCACCTCTCCTAGCAAGTCTCCATTCCTGCACTCTGGGATGAAAATGCAGAAGGCAGGt/t																																																																														
MGA	0	MSKCC	GRCh37	15	41991097	41991097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	220	482	0	ENST00000219905.7:c.2050G>A	p.Glu684Lys	p.E684K	ENST00000219905	NM_001164273.1	684	Gaa/Aaa																																																																														
KIT	0	MSKCC	GRCh37	4	55592204	55592204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	53	374	0	ENST00000288135.5:c.1528G>T	p.Gly510Cys	p.G510C	ENST00000288135	NM_000222.2	510	Ggt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	235	561	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
MSH6	0	MSKCC	GRCh37	2	48026859	48026859	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	145	317	0	ENST00000234420.5:c.1737T>G	p.Cys579Trp	p.C579W	ENST00000234420	NM_000179.2	579	tgT/tgG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	112	559	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923503	9923503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	47	375	0	ENST00000330684.3:c.1784A>G	p.His595Arg	p.H595R	ENST00000330684	NM_001134407.1	595	cAt/cGt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458054	120458054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	56	493	0	ENST00000256646.2:c.7291C>T	p.His2431Tyr	p.H2431Y	ENST00000256646	NM_024408.3	2431	Cac/Tac																																																																														
ATM	0	MSKCC	GRCh37	11	108206616	108206616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	171	444	0	ENST00000278616.4:c.8196C>A	p.Phe2732Leu	p.F2732L	ENST00000278616	NM_000051.3	2732	ttC/ttA																																																																														
RPTOR	0	MSKCC	GRCh37	17	78704451	78704451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	82	448	1	ENST00000306801.3:c.599G>T	p.Gly200Val	p.G200V	ENST00000306801	NM_020761.2	200	gGc/gTc																																																																														
MALT1	0	MSKCC	GRCh37	18	56367808	56367808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	82	369	0	ENST00000348428.3:c.634C>T	p.Pro212Ser	p.P212S	ENST00000348428	NM_006785.3	212	Cca/Tca																																																																														
JAK3	0	MSKCC	GRCh37	19	17942535	17942535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	43	655	3	ENST00000458235.1:c.2753G>A	p.Arg918His	p.R918H	ENST00000458235	NM_000215.3	918	cGc/cAc																																																																														
PMS1	0	MSKCC	GRCh37	2	190708715	190708715	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	87	501	0	ENST00000441310.2:c.608T>A	p.Val203Glu	p.V203E	ENST00000441310	NM_000534.4	203	gTa/gAa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212495203	212495203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	97	572	0	ENST00000342788.4:c.2063G>T	p.Arg688Ile	p.R688I	ENST00000342788	NM_005235.2	688	aGa/aTa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176517444	176517444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	117	606	2	ENST00000292408.4:c.145C>A	p.Leu49Ile	p.L49I	ENST00000292408	NM_213647.1	49	Ctt/Att																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163264	32163264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	198	1032	2	ENST00000375023.3:c.5962C>T	p.Pro1988Ser	p.P1988S	ENST00000375023	NM_004557.3	1988	Cca/Tca																																																																														
ARID1B	0	MSKCC	GRCh37	6	157502149	157502149	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	42	548	0	ENST00000346085.5:c.3182A>T	p.Tyr1061Phe	p.Y1061F	ENST00000346085	NM_020732.3	1061	tAc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	195	537	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0016051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	151	421	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	557	875	3	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
KIT	0	MSKCC	GRCh37	4	55602952	55602952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	218	436	0	ENST00000288135.5:c.2662C>T	p.Arg888Trp	p.R888W	ENST00000288135	NM_000222.2	888	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175562	112175563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAT			P-0016051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	191	508	0	ENST00000257430.4:c.4274_4277dup	p.Ser1426ArgfsTer2	p.S1426Rfs*2	ENST00000257430	NM_000038.5	1424	cca/ccAGATa																																																																														
EGFR	0	MSKCC	GRCh37	7	55273049	55273049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	426	664	2	ENST00000275493.2:c.3372C>A	p.His1124Gln	p.H1124Q	ENST00000275493	NM_005228.3	1124	caC/caA																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	264	487	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	791	515	3	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	278	355	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	63	485	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092740	27092740	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	317	455	0	ENST00000324856.7:c.2765delG	p.Gly922AlafsTer2	p.G922Afs*2	ENST00000324856	NM_006015.4	921	Ggg/gg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	28	399	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	209	304	3	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																														
RAD50	10111	MSKCC	GRCh37	5	131931452	131931452	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772667708		P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	297	390	3	ENST00000265335.6:c.2165del	p.Lys722ArgfsTer14	p.K722Rfs*14	ENST00000265335		719	ctA/ct																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	405	594	2	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	88	432	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44732910	44732910	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	248	529	0	ENST00000377967.4:c.117del	p.Ser40AlafsTer2	p.S40Afs*2	ENST00000377967	NM_021140.2	38	tCc/tc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	375	395	22	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																														
CTCF	0	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	302	516	4	ENST00000264010.4:c.950_951delCA	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	191	346	0	ENST00000349496.5:c.95A>C	p.Asp32Ala	p.D32A	ENST00000349496	NM_001904.3	32	gAc/gCc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105648	27105648	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	300	421	0	ENST00000324856.7:c.5259del	p.Ser1754LeufsTer16	p.S1754Lfs*16	ENST00000324856	NM_006015.4	1753	gtG/gt																																																																														
GATA3	0	MSKCC	GRCh37	10	8100648	8100648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1304	116	807	1	ENST00000346208.3:c.622C>A	p.Leu208Met	p.L208M	ENST00000346208		208	Ctg/Atg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71949205	71949205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	442	780	0	ENST00000298229.2:c.3672C>A	p.Asp1224Glu	p.D1224E	ENST00000298229	NM_001567.3	1224	gaC/gaA																																																																														
ATM	0	MSKCC	GRCh37	11	108142060	108142060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	221	553	0	ENST00000278616.4:c.3004G>T	p.Gly1002Cys	p.G1002C	ENST00000278616	NM_000051.3	1002	Ggt/Tgt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32930609	32930609	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	293	454	1	ENST00000380152.3:c.7480C>T	p.Arg2494Ter	p.R2494*	ENST00000380152		2494	Cga/Tga																																																																														
ERCC5	0	MSKCC	GRCh37	13	103513896	103513896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	239	418	0	ENST00000355739.4:c.712C>T	p.Leu238Phe	p.L238F	ENST00000355739	NM_000123.3	238	Ctt/Ttt																																																																														
AXIN1	0	MSKCC	GRCh37	16	354350	354350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	338	705	0	ENST00000262320.3:c.1208G>A	p.Arg403Gln	p.R403Q	ENST00000262320	NM_003502.3	403	cGg/cAg																																																																														
CDH1	0	MSKCC	GRCh37	16	68842456	68842456	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	348	526	0	ENST00000261769.5:c.521del	p.Asn174ThrfsTer41	p.N174Tfs*41	ENST00000261769	NM_004360.3	173	Aaa/aa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99155990	99155990	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	294	473	0	ENST00000074304.5:c.671-1G>A		p.X224_splice	ENST00000074304	NM_001134224.1	224																																																																															
INPP4A	0	MSKCC	GRCh37	2	99181137	99181137	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	395	585	0	ENST00000074304.5:c.2078T>C	p.Leu693Pro	p.L693P	ENST00000074304	NM_001134224.1	693	cTg/cCg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098012	178098012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	283	398	0	ENST00000397062.3:c.368del	p.Leu123TrpfsTer8	p.L123Wfs*8	ENST00000397062	NM_006164.4	123	tTg/tg																																																																														
ERG	0	MSKCC	GRCh37	21	39817382	39817382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	241	423	1	ENST00000288319.7:c.181C>A	p.Pro61Thr	p.P61T	ENST00000288319	NM_182918.3	61	Cca/Aca																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73108255	73108255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	34	96	0	ENST00000356692.5:c.355G>T	p.Asp119Tyr	p.D119Y	ENST00000356692		119	Gac/Tac																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55143590	55143590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138740193		P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	47	371	0	ENST00000257290.5:c.1822G>A	p.Val608Ile	p.V608I	ENST00000257290	NM_006206.4	608	Gtt/Att																																																																														
INPP4B	0	MSKCC	GRCh37	4	143007309	143007309	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	178	311	0	ENST00000262992.4:c.2475G>A	p.Trp825Ter	p.W825*	ENST00000262992	NM_001101669.1	825	tgG/tgA																																																																														
MSH3	0	MSKCC	GRCh37	5	79950782	79950782	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	77	205	0	ENST00000265081.6:c.236T>C	p.Ile79Thr	p.I79T	ENST00000265081	NM_002439.4	79	aTa/aCa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527727	157527727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	112	515	1	ENST00000346085.5:c.5452C>T	p.His1818Tyr	p.H1818Y	ENST00000346085	NM_020732.3	1818	Cac/Tac																																																																														
MET	0	MSKCC	GRCh37	7	116412563	116412563	+	intron_variant	Intron	DEL	A	A	-			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1566	545	912	0	ENST00000397752.3:c.3028+526delA		p.*1010*	ENST00000397752	NM_000245.2																																																																																
PREX2	0	MSKCC	GRCh37	8	68995527	68995527	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	363	673	0	ENST00000288368.4:c.1935del	p.Phe645LeufsTer2	p.F645Lfs*2	ENST00000288368	NM_024870.2	644	gTt/gt																																																																														
NBN	0	MSKCC	GRCh37	8	90982638	90982638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	192	340	0	ENST00000265433.3:c.850G>A	p.Asp284Asn	p.D284N	ENST00000265433	NM_002485.4	284	Gac/Aac																																																																														
MYC	0	MSKCC	GRCh37	8	128750678	128750678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	204	460	0	ENST00000377970.2:c.215C>A	p.Pro72His	p.P72H	ENST00000377970	NM_002467.4	72	cCc/cAc																																																																														
TSC1	0	MSKCC	GRCh37	9	135778026	135778026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	287	444	0	ENST00000298552.3:c.2357G>A	p.Arg786Gln	p.R786Q	ENST00000298552	NM_001162426.1	786	cGa/cAa																																																																														
RBM10	0	MSKCC	GRCh37	X	47004885	47004885	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	364	638	0	ENST00000329236.7:c.-126+1G>A		p.X42_splice	ENST00000329236	NM_001204466.1	42																																																																															
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	131	526	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0016054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	182	474	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
SMAD2	0	MSKCC	GRCh37	18	45422926	45422926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	133	372	0	ENST00000262160.6:c.202C>T	p.Gln68Ter	p.Q68*	ENST00000262160	NM_005901.5	68	Caa/Taa																																																																														
HGF	0	MSKCC	GRCh37	7	81392173	81392173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	53	211	0	ENST00000222390.5:c.104G>C	p.Arg35Thr	p.R35T	ENST00000222390	NM_000601.4	35	aGa/aCa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226125	53226125	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	190	589	0	ENST00000375401.3:c.2724del	p.Arg909GlyfsTer26	p.R909Gfs*26	ENST00000375401	NM_004187.3	908	ggG/gg																																																																														
GATA2	0	MSKCC	GRCh37	3	128200720	128200720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	8	817	3	ENST00000341105.2:c.1085G>T	p.Arg362Leu	p.R362L	ENST00000341105	NM_032638.4	362	cGa/cTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151960099	151960099	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0016059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	23	567	0	ENST00000262189.6:c.1299+2T>C		p.X433_splice	ENST00000262189	NM_170606.2	433																																																																															
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	499	886	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	202	794	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	16	835	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41275191	41275191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	89	515	0	ENST00000349496.5:c.1357C>T	p.Arg453Trp	p.R453W	ENST00000349496	NM_001904.3	453	Cgg/Tgg																																																																														
EED	0	MSKCC	GRCh37	11	85977189	85977189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	119	674	0	ENST00000263360.6:c.791G>A	p.Arg264Lys	p.R264K	ENST00000263360	NM_003797.3	264	aGg/aAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431850	49431850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	105	756	2	ENST00000301067.7:c.9289G>A	p.Glu3097Lys	p.E3097K	ENST00000301067	NM_003482.3	3097	Gag/Aag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56490299	56490299	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	65	473	0	ENST00000267101.3:c.2068C>G	p.Leu690Val	p.L690V	ENST00000267101	NM_001982.3	690	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	30	902	0	ENST00000269305.4:c.475del	p.Ala159ProfsTer11	p.A159Pfs*11	ENST00000269305	NM_001126112.2	159	Gcc/cc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4097296	4097298	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0016062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	119	951	0	ENST00000262948.5:c.963_965del	p.Leu322del	p.L322del	ENST00000262948	NM_030662.3	321	ctCCTg/ctg																																																																														
SOS1	0	MSKCC	GRCh37	2	39281943	39281943	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	86	432	0	ENST00000402219.2:c.532C>G	p.Gln178Glu	p.Q178E	ENST00000402219	NM_005633.3	178	Caa/Gaa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099206	157099206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	107	696	1	ENST00000346085.5:c.143C>T	p.Ser48Phe	p.S48F	ENST00000346085	NM_020732.3	48	tCc/tTc																																																																														
BRAF	0	MSKCC	GRCh37	7	140449195	140449195	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	96	520	0	ENST00000288602.6:c.1884A>T	p.Gln628His	p.Q628H	ENST00000288602	NM_004333.4	628	caA/caT																																																																														
NBN	0	MSKCC	GRCh37	8	90965695	90965695	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	105	512	0	ENST00000265433.3:c.1622C>G	p.Ala541Gly	p.A541G	ENST00000265433	NM_002485.4	541	gCt/gGt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	44	621	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																														
RET	0	MSKCC	GRCh37	10	43601920	43601920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	113	734	0	ENST00000355710.3:c.964G>A	p.Asp322Asn	p.D322N	ENST00000355710	NM_020975.4	322	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	392	810	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SESN3	0	MSKCC	GRCh37	11	94963946	94963946	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	99	622	0	ENST00000536441.1:c.78+1G>T		p.X26_splice	ENST00000536441	NM_144665.3	26																																																																															
CCND2	0	MSKCC	GRCh37	12	4409039	4409039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	53	481	0	ENST00000261254.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000261254	NM_001759.3	245	gCt/gTt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212522512	212522512	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	55	616	0	ENST00000342788.4:c.1913G>C	p.Trp638Ser	p.W638S	ENST00000342788	NM_005235.2	638	tGg/tCg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133538	55133538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	48	805	2	ENST00000257290.5:c.842C>T	p.Thr281Met	p.T281M	ENST00000257290	NM_006206.4	281	aCg/aTg																																																																														
MDC1	0	MSKCC	GRCh37	6	30680299	30680299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	67	848	0	ENST00000376406.3:c.1420C>T	p.His474Tyr	p.H474Y	ENST00000376406	NM_014641.2	474	Cac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	205	645	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	20	644	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	57	410	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	288	455	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	168	754	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	348	458	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7984229	7984229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	180	842	0	ENST00000319144.4:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000319144	NM_001139.2	167	cGg/cAg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41275653	41275653	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	117	594	0	ENST00000349496.5:c.1548T>G	p.Asn516Lys	p.N516K	ENST00000349496	NM_001904.3	516	aaT/aaG																																																																														
FBXW7	0	MSKCC	GRCh37	4	153271273	153271273	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	69	400	0	ENST00000281708.4:c.505A>T	p.Lys169Ter	p.K169*	ENST00000281708	NM_033632.3	169	Aaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112174010	112174010	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	185	548	0	ENST00000257430.4:c.2721del	p.Ser908LeufsTer8	p.S908Lfs*8	ENST00000257430	NM_000038.5	907	Ggg/gg																																																																														
ERG	0	MSKCC	GRCh37	21	39755698	39755698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	29	724	1	ENST00000288319.7:c.1067G>A	p.Ser356Asn	p.S356N	ENST00000288319	NM_182918.3	356	aGc/aAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	63	697	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0016068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	146	787	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	33	474	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222831	5222831	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2230610		P-0016068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	26	636	2	ENST00000357368.4:c.2972C>T	p.Ala991Val	p.A991V	ENST00000357368	NM_002850.3	991	gCg/gTg																																																																														
KDR	0	MSKCC	GRCh37	4	55955090	55955090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	43	716	0	ENST00000263923.4:c.3455C>G	p.Thr1152Arg	p.T1152R	ENST00000263923	NM_002253.2	1152	aCg/aGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	159	448	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121913407		P-0016070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	99	475	0	ENST00000349496.5:c.133T>G	p.Ser45Ala	p.S45A	ENST00000349496	NM_001904.3	45	Tct/Gct																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074070	8074100	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGAACATCATATTTGAAATCAGAAAGTGT	CAGGAACATCATATTTGAAATCAGAAAGTGT	-			P-0016070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	154	416	0	ENST00000377482.5:c.559_589del	p.Thr187AlafsTer50	p.T187Afs*50	ENST00000377482	NM_018948.3	187	ACACTTTCTGATTTCAAATATGATGTTCCTGgc/gc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94170345	94170345	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	178	411	1	ENST00000323929.3:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000323929	NM_005591.3	642	Gag/Aag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991820	72991820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	199	762	0	ENST00000268489.5:c.2225G>A	p.Ser742Asn	p.S742N	ENST00000268489	NM_006885.3	742	aGt/aAt																																																																														
PREX2	0	MSKCC	GRCh37	8	68864703	68864703	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	99	564	0	ENST00000288368.4:c.74T>A	p.Val25Glu	p.V25E	ENST00000288368	NM_024870.2	25	gTg/gAg																																																																														
CD274	0	MSKCC	GRCh37	9	5466803	5466804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGATACAAACTCAAAG			P-0016070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	66	296	0	ENST00000381577.3:c.826_841dup	p.Lys281ArgfsTer9	p.K281Rfs*9	ENST00000381577	NM_014143.3	275	caa/caAGATACAAACTCAAAGa																																																																														
BTK	0	MSKCC	GRCh37	X	100613405	100613405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	136	741	0	ENST00000308731.7:c.995G>T	p.Arg332Leu	p.R332L	ENST00000308731	NM_000061.2	332	cGt/cTt																																																																														
BTK	0	MSKCC	GRCh37	X	100613426	100613426	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	106	648	0	ENST00000308731.7:c.975-1G>T		p.X325_splice	ENST00000308731	NM_000061.2	325																																																																															
SETD2	0	MSKCC	GRCh37	3	47129731	47129731	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	16	409	1	ENST00000409792.3:c.5149G>T	p.Gly1717Ter	p.G1717*	ENST00000409792	NM_014159.6	1717	Gga/Tga																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400279	139400295	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGCAGGCTGCCGCAG	AGCGCAGGCTGCCGCAG	-			P-0016087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	52	784	0	ENST00000277541.6:c.4053_4069del	p.Cys1352ProfsTer47	p.C1352Pfs*47	ENST00000277541	NM_017617.3	1351	acCTGCGGCAGCCTGCGCTgc/acgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	1212	618	2	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CDK12	0	MSKCC	GRCh37	17	37619172	37619172	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	146	578	0	ENST00000447079.4:c.848C>A	p.Ser283Ter	p.S283*	ENST00000447079	NM_015083.1	283	tCg/tAg																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66523994	66523994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	43	260	0	ENST00000358598.2:c.722G>A	p.Arg241Lys	p.R241K	ENST00000358598	NM_212471.2	241	aGa/aAa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37884031	37884031	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	370	719	1	ENST00000269571.5:c.3502G>T	p.Glu1168Ter	p.E1168*	ENST00000269571		1168	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578536	7578536	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	416	990	0	ENST00000269305.4:c.394A>T	p.Lys132Ter	p.K132*	ENST00000269305	NM_001126112.2	132	Aag/Tag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458549	120458549	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	124	581	0	ENST00000256646.2:c.6796G>C	p.Glu2266Gln	p.E2266Q	ENST00000256646	NM_024408.3	2266	Gag/Cag																																																																														
PGR	0	MSKCC	GRCh37	11	100922156	100922156	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	239	387	0	ENST00000325455.5:c.2356G>T	p.Glu786Ter	p.E786*	ENST00000325455	NM_001202474.3	786	Gaa/Taa																																																																														
ATM	0	MSKCC	GRCh37	11	108137924	108137925	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	33	415	2	ENST00000278616.4:c.2493_2494delinsAT	p.Asp831_Arg832delinsGluCys	p.D831_R832delinsEC	ENST00000278616	NM_000051.3	831	gaCCgt/gaATgt																																																																														
POLE	0	MSKCC	GRCh37	12	133240613	133240613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201115064		P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	87	482	0	ENST00000320574.5:c.2683G>A	p.Ala895Thr	p.A895T	ENST00000320574	NM_006231.2	895	Gcc/Acc																																																																														
RB1	0	MSKCC	GRCh37	13	49039201	49039201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	280	579	0	ENST00000267163.4:c.2279T>C	p.Phe760Ser	p.F760S	ENST00000267163	NM_000321.2	760	tTc/tCc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30194859	30194859	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	150	589	0	ENST00000331968.5:c.286G>T	p.Gly96Ter	p.G96*	ENST00000331968	NM_002742.2	96	Gga/Tga																																																																														
PALB2	0	MSKCC	GRCh37	16	23646990	23646990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	132	617	0	ENST00000261584.4:c.877G>C	p.Gly293Arg	p.G293R	ENST00000261584	NM_024675.3	293	Ggc/Cgc																																																																														
CDK12	0	MSKCC	GRCh37	17	37619037	37619037	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	167	694	0	ENST00000447079.4:c.713C>G	p.Ser238Trp	p.S238W	ENST00000447079	NM_015083.1	238	tCg/tGg																																																																														
CARM1	10498	MSKCC	GRCh37	19	10982118	10982511	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	GCCCAGGACGGCCGGCAGAGGGCGCTGCGCCACGGGGCCGGGCCGCGGCGACGGTGGCGGCGGCGGCGGCGAGGCGGCGCGTGGCCGGCAGGCGGCGCTGCCCGGCTCGGCCTCGGCCTGCACGGCGGCTGCGGCGGCGGTAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCCTGGGCCCGGGCGCAGCGGCGGCGGCGGCGGGGCCTGGAGCCGGATCTAAGATGGCAGCGGCGGCGGCGGCGGTGGGGCCGGGCGCGGGCGGCGCGGGGTCGGCGGTCCCGGGCGGCGCGGGGCCCTGCGCTACCGTGTCGGTGTTCCCCGGCGCCCGCCTCCTCACCATCGGCGACGCGAACG	GCCCAGGACGGCCGGCAGAGGGCGCTGCGCCACGGGGCCGGGCCGCGGCGACGGTGGCGGCGGCGGCGGCGAGGCGGCGCGTGGCCGGCAGGCGGCGCTGCCCGGCTCGGCCTCGGCCTGCACGGCGGCTGCGGCGGCGGTAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCCTGGGCCCGGGCGCAGCGGCGGCGGCGGCGGGGCCTGGAGCCGGATCTAAGATGGCAGCGGCGGCGGCGGCGGTGGGGCCGGGCGCGGGCGGCGCGGGGTCGGCGGTCCCGGGCGGCGCGGGGCCCTGCGCTACCGTGTCGGTGTTCCCCGGCGCCCGCCTCCTCACCATCGGCGACGCGAACG	-			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	2	33	0				ENST00000327064	NM_199141.1			1/16																																																																													
CIC	0	MSKCC	GRCh37	19	42797942	42797942	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	218	817	0	ENST00000575354.2:c.3994A>G	p.Lys1332Glu	p.K1332E	ENST00000575354	NM_015125.3	1332	Aag/Gag																																																																														
IRS1	0	MSKCC	GRCh37	2	227660831	227660831	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	25	421	0	ENST00000305123.5:c.2624G>C	p.Arg875Pro	p.R875P	ENST00000305123	NM_005544.2	875	cGa/cCa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52682459	52682459	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	72	330	0	ENST00000394830.3:c.715-1G>A		p.X239_splice	ENST00000394830	NM_018313.4	239																																																																															
ATR	0	MSKCC	GRCh37	3	142186823	142186823	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	223	410	0	ENST00000350721.4:c.6640G>C	p.Asp2214His	p.D2214H	ENST00000350721	NM_001184.3	2214	Gat/Cat																																																																														
DROSHA	0	MSKCC	GRCh37	5	31468146	31468146	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	89	594	0	ENST00000344624.3:c.2266C>T	p.Gln756Ter	p.Q756*	ENST00000344624		756	Caa/Taa																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	77	456	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	337	845	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	126	541	0	ENST00000369535.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000369535	NM_002524.4	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	89	259	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
MPL	0	MSKCC	GRCh37	1	43806160	43806160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	205	511	0	ENST00000372470.3:c.956G>T	p.Arg319Met	p.R319M	ENST00000372470	NM_005373.2	319	aGg/aTg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911579	114911579	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	38	749	0	ENST00000543371.1:c.1097C>G	p.Ala366Gly	p.A366G	ENST00000543371	NM_001198531.1	366	gCa/gGa																																																																														
SLX4	0	MSKCC	GRCh37	16	3647918	3647918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	201	903	1	ENST00000294008.3:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000294008	NM_032444.2	416	Gca/Aca																																																																														
NF2	0	MSKCC	GRCh37	22	30051642	30051642	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	30	374	0	ENST00000338641.4:c.576C>G	p.Tyr192Ter	p.Y192*	ENST00000338641	NM_000268.3	192	taC/taG																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324112	31324125	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGGGCGATGTAA	TCAGGGCGATGTAA	-			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	38	134	0	ENST00000412585.2:c.438_451del	p.Asp146GlufsTer26	p.D146Efs*26	ENST00000412585	NM_005514.6	146	gaTTACATCGCCCTGAac/gaac																																																																														
EZH2	0	MSKCC	GRCh37	7	148512047	148512047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	170	471	0	ENST00000320356.2:c.1631C>T	p.Ala544Val	p.A544V	ENST00000320356	NM_004456.4	544	gCa/gTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	146	484	0				ENST00000310581	NM_198253.2																																																																																
PTEN	0	MSKCC	GRCh37	10	89692897	89692912	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGGGACGAACTGGT	AAAGGGACGAACTGGT	-			P-0016092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	97	518	0	ENST00000371953.3:c.381_396del	p.Lys128Ter	p.K128*	ENST00000371953	NM_000314.4	127	ggAAAGGGACGAACTGGT/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016093-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			962	128	465	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
BTK	0	MSKCC	GRCh37	X	100611793	100611793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016093-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			629	54	392	0	ENST00000308731.7:c.1328T>C	p.Ile443Thr	p.I443T	ENST00000308731	NM_000061.2	443	aTt/aCt																																																																														
XPO1	0	MSKCC	GRCh37	2	61711225	61711225	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016093-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			678	78	437	0	ENST00000401558.2:c.2524C>G	p.Pro842Ala	p.P842A	ENST00000401558	NM_003400.3	842	Cct/Gct																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0016108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	39	470	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	45	707	3	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
FLCN	0	MSKCC	GRCh37	17	17116977	17116977	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	23	454	0	ENST00000285071.4:c.1732C>G	p.Arg578Gly	p.R578G	ENST00000285071	NM_144997.5	578	Cgg/Ggg																																																																														
SOX9	0	MSKCC	GRCh37	17	70120214	70120214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	51	656	0	ENST00000245479.2:c.1216C>T	p.His406Tyr	p.H406Y	ENST00000245479	NM_000346.3	406	Cac/Tac																																																																														
ARAF	0	MSKCC	GRCh37	X	47424220	47424220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	36	584	0	ENST00000377045.4:c.225C>A	p.Asp75Glu	p.D75E	ENST00000377045	NM_001654.4	75	gaC/gaA																																																																														
TP53	0	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	534	765	1	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	566	600	1	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18793382	18793382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs77070108		P-0016111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	261	549	1	ENST00000266497.5:c.4079C>T	p.Ala1360Val	p.A1360V	ENST00000266497		1360	gCg/gTg																																																																														
ALK	0	MSKCC	GRCh37	2	29917794	29917794	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201750304		P-0016111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	443	705	1	ENST00000389048.3:c.874C>T	p.Arg292Cys	p.R292C	ENST00000389048	NM_004304.4	292	Cgc/Tgc																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22008871	22008871	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	447	724	0	ENST00000276925.6:c.82G>T	p.Glu28Ter	p.E28*	ENST00000276925	NM_004936.3	28	Gag/Tag																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137524714	137524716	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0016117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	192	641	0	ENST00000367739.4:c.653_655delAAG	p.Glu218del	p.E218del	ENST00000367739	NM_000416.2	218	gAAGga/gga																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061152	38061185	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	CCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCG	-			P-0016117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	256	212	0	ENST00000250448.2:c.804_837del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tgCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGG/tg																																																																														
CDK12	0	MSKCC	GRCh37	17	37618817	37618817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	191	616	1	ENST00000447079.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000447079	NM_015083.1	165	Cag/Tag																																																																														
CDK12	0	MSKCC	GRCh37	17	37627854	37627854	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	517	591	0	ENST00000447079.4:c.1769C>G	p.Ser590Ter	p.S590*	ENST00000447079	NM_015083.1	590	tCa/tGa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38960562	38960562	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	120	402	0	ENST00000357387.3:c.1789A>G	p.Lys597Glu	p.K597E	ENST00000357387	NM_152756.3	597	Aag/Gag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	87	579	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0016118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	53	425	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	289	652	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	251	686	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	96	554	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																														
RAD50	0	MSKCC	GRCh37	5	131944853	131944853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	68	438	0	ENST00000265335.6:c.2874G>T	p.Met958Ile	p.M958I	ENST00000265335		958	atG/atT																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	76	382	0	ENST00000397062.3:c.70T>A	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Agg																																																																														
STK11	0	MSKCC	GRCh37	19	1207011	1207026	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCATCTACCAGCCG	GGTCATCTACCAGCCG	-			P-0016127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	106	565	0	ENST00000326873.7:c.99_114del	p.Glu33AspfsTer13	p.E33Dfs*13	ENST00000326873	NM_000455.4	33	gaGGTCATCTACCAGCCG/ga																																																																														
BTK	0	MSKCC	GRCh37	X	100615709	100615709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	130	648	0	ENST00000308731.7:c.623C>A	p.Ala208Glu	p.A208E	ENST00000308731	NM_000061.2	208	gCa/gAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	136	657	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222369	2222382	+	frameshift_variant	Frame_Shift_Del	DEL	GACCGCCAGCGCCC	GACCGCCAGCGCCC	-			P-0016129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	129	647	0	ENST00000398665.3:c.3202_3215del	p.Thr1068TrpfsTer61	p.T1068Wfs*61	ENST00000398665	NM_032482.2	1067	ctGACCGCCAGCGCCCgt/ctgt																																																																														
PMS2	0	MSKCC	GRCh37	7	6035184	6035184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	146	630	0	ENST00000265849.7:c.884G>T	p.Arg295Leu	p.R295L	ENST00000265849	NM_000535.5	295	cGg/cTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874177	151874183	+	frameshift_variant	Frame_Shift_Del	DEL	ATTATCT	ATTATCT	TTG			P-0016129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	84	682	2	ENST00000262189.6:c.8355_8361delinsCAA	p.Leu2785PhefsTer37	p.L2785Ffs*37	ENST00000262189	NM_170606.2	2785	ttAGATAAT/ttCAA																																																																														
ATRX	0	MSKCC	GRCh37	X	76939132	76939132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	177	773	1	ENST00000373344.5:c.1616A>T	p.Gln539Leu	p.Q539L	ENST00000373344	NM_000489.3	539	cAg/cTg																																																																														
NF1	0	MSKCC	GRCh37	17	29559817	29559818	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0016129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	93	452	0	ENST00000358273.4:c.3414_3415delinsC	p.Ala1139HisfsTer3	p.A1139Hfs*3	ENST00000358273	NM_001042492.2	1138	ctGGca/ctCca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0016130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	443	889	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
MST1R	0	MSKCC	GRCh37	3	49936552	49936552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	462	734	0	ENST00000296474.3:c.1375G>C	p.Val459Leu	p.V459L	ENST00000296474	NM_002447.2	459	Gtc/Ctc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874869	151874869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	147	377	0	ENST00000262189.6:c.7669G>T	p.Ala2557Ser	p.A2557S	ENST00000262189	NM_170606.2	2557	Gca/Tca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	97	457	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	288	923	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
RYBP	0	MSKCC	GRCh37	3	72495732	72495732	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	190	609	0	ENST00000477973.2:c.338del	p.Trp114GlyfsTer22	p.W114Gfs*22	ENST00000477973	NM_012234.5	114	Tgg/gg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	188	399	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458435	120458436	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	36	454	0	ENST00000256646.2:c.6909dupC	p.Ile2304HisfsTer9	p.I2304Hfs*9	ENST00000256646	NM_024408.3	2303	-/C																																																																														
CDH1	0	MSKCC	GRCh37	16	68842686	68842686	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	187	652	0	ENST00000261769.5:c.622G>T	p.Glu208Ter	p.E208*	ENST00000261769	NM_004360.3	208	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	62	414	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	61	386	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	29	248	0	ENST00000304494.5:c.95T>A	p.Leu32Gln	p.L32Q	ENST00000304494	NM_000077.4	32	cTg/cAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	29	248	0	ENST00000304494.5:c.95T>A	p.Leu32Gln	p.L32Q	ENST00000304494	NM_000077.4	32	cTg/cAg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851601	134851601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	35	382	0	ENST00000398015.3:c.1007C>T	p.Thr336Met	p.T336M	ENST00000398015	NM_004441.4	336	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	1241	531	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249011	55249012	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAACCCCCACGG			P-0016139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	780	497	0	ENST00000275493.2:c.2320_2321insGCAACCCCCACG	p.His773_Val774insGlyAsnProHis	p.H773_V774insGNPH	ENST00000275493	NM_005228.3	770	gac/gaCAACCCCCACGGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0016141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	61	485	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	103	686	0	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																														
CDH1	0	MSKCC	GRCh37	16	68847363	68847368	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGTG	CCAGTG	AA			P-0016141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	44	461	2	ENST00000261769.5:c.1285_1290delinsAA	p.Pro429LysfsTer7	p.P429Kfs*7	ENST00000261769	NM_004360.3	429	CCAGTG/AA																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880188	37880188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	77	459	0	ENST00000269571.5:c.2232G>T	p.Glu744Asp	p.E744D	ENST00000269571		744	gaG/gaT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	320	414	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197399	26197399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	61	163	0	ENST00000356476.2:c.80G>T	p.Arg27Leu	p.R27L	ENST00000356476		27	cGa/cTa																																																																														
ROS1	0	MSKCC	GRCh37	6	117715883	117715883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	117	436	1	ENST00000368508.3:c.875G>T	p.Trp292Leu	p.W292L	ENST00000368508	NM_002944.2	292	tGg/tTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118348745	118348745	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	284	438	0	ENST00000534358.1:c.3398A>C	p.Lys1133Thr	p.K1133T	ENST00000534358	NM_005933.3	1133	aAa/aCa																																																																														
PALB2	0	MSKCC	GRCh37	16	23641011	23641011	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	202	441	0	ENST00000261584.4:c.2464C>T	p.Gln822Ter	p.Q822*	ENST00000261584	NM_024675.3	822	Cag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29687550	29687550	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	307	493	0	ENST00000358273.4:c.8206G>C	p.Asp2736His	p.D2736H	ENST00000358273	NM_001042492.2	2736	Gat/Cat																																																																														
CD79A	0	MSKCC	GRCh37	19	42381396	42381402	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCAAG	CTCCAAG	-			P-0016144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	277	467	0	ENST00000221972.3:c.25_31del	p.Gln9CysfsTer32	p.Q9Cfs*32	ENST00000221972	NM_021601.3	8	CTCCAAGct/ct																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589646	67589852	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATACCCGCACATCCCAGGTGAGTTTTCTATGAAAATCAGATTAAAAAATAAGAGTTCTAAACTTTTAAAGACTAACATGGAAAAAAGAATTTAAAAGGTTGAGTTTTTACGAATGAGGTGGGGGTGAGAGCATTTATTTGTGAATCATTGTTGATTATTCTAGTGTAATATCTCTAAAGCTTTAAACCAAAAATTTTAAGTATCAGA	ATACCCGCACATCCCAGGTGAGTTTTCTATGAAAATCAGATTAAAAAATAAGAGTTCTAAACTTTTAAAGACTAACATGGAAAAAAGAATTTAAAAGGTTGAGTTTTTACGAATGAGGTGGGGGTGAGAGCATTTATTTGTGAATCATTGTTGATTATTCTAGTGTAATATCTCTAAAGCTTTAAACCAAAAATTTTAAGTATCAGA	-			P-0016144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	130	403	0	ENST00000274335.5:c.1412_1425+193del		p.X471_splice	ENST00000274335		471																																																																															
FGFR4	0	MSKCC	GRCh37	5	176520473	176520473	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	336	712	0	ENST00000292408.4:c.1318T>C	p.Ser440Pro	p.S440P	ENST00000292408	NM_213647.1	440	Tcc/Ccc																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032175	26032175	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	146	238	0	ENST00000244661.2:c.114G>C	p.Lys38Asn	p.K38N	ENST00000244661	NM_003537.3	38	aaG/aaC																																																																														
TAP1	0	MSKCC	GRCh37	6	32815791	32815791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	297	565	1	ENST00000354258.4:c.1825G>T	p.Ala609Ser	p.A609S	ENST00000354258	NM_000593.5	609	Gcc/Tcc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120218	94120218	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0016144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	206	265	0	ENST00000369303.4:c.832+1G>C		p.X278_splice	ENST00000369303	NM_004440.3	278																																																																															
MED12	0	MSKCC	GRCh37	X	70338631	70338631	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	265	474	0	ENST00000374080.3:c.27C>G	p.Tyr9Ter	p.Y9*	ENST00000374080		9	taC/taG																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15285074	15285078	+	missense_variant	Missense_Mutation	ONP	ACCAG	ACCAG	CCCAT			P-0016144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	319	621	0	ENST00000263388.2:c.4537_4541delinsATGGG	p.Leu1513_Val1514delinsMetGly	p.L1513_V1514delinsMG	ENST00000263388	NM_000435.2	1513	CTGGTg/ATGGGg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271792	15271803	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGGGACTGCC	CCTGGGACTGCC	A			P-0016144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	267	624	1	ENST00000263388.2:c.6636_6647delinsT	p.Ala2213ThrfsTer25	p.A2213Tfs*25	ENST00000263388	NM_000435.2	2212	ctGGCAGTCCCAGGa/ctTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0016145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	33	364	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	96	372	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
FAT1	0	MSKCC	GRCh37	4	187627752	187627752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1723	106	438	0	ENST00000441802.2:c.3230C>G	p.Ser1077Cys	p.S1077C	ENST00000441802	NM_005245.3	1077	tCt/tGt																																																																														
STK11	0	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	373	494	0	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																														
PBRM1	0	MSKCC	GRCh37	3	52595951	52595951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	94	379	0	ENST00000394830.3:c.3964A>G	p.Lys1322Glu	p.K1322E	ENST00000394830	NM_018313.4	1322	Aag/Gag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	129	248	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	593	563	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56480341	56480341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	290	377	0	ENST00000267101.3:c.448G>A	p.Glu150Lys	p.E150K	ENST00000267101	NM_001982.3	150	Gag/Aag																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651893	36651894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	182	363	0	ENST00000244741.5:c.19dup	p.Asp7GlyfsTer29	p.D7Gfs*29	ENST00000244741	NM_000389.4	5	-/G																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495016	56495016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	341	368	0	ENST00000267101.3:c.3373C>T	p.Arg1125Trp	p.R1125W	ENST00000267101	NM_001982.3	1125	Cgg/Tgg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123276950	123276950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	56	408	0	ENST00000358487.5:c.967G>C	p.Glu323Gln	p.E323Q	ENST00000358487	NM_000141.4	323	Gag/Cag																																																																														
KDM5A	0	MSKCC	GRCh37	12	416799	416799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	181	262	0	ENST00000399788.2:c.3751G>A	p.Glu1251Lys	p.E1251K	ENST00000399788	NM_001042603.1	1251	Gaa/Aaa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481830	56481830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	454	471	0	ENST00000267101.3:c.758G>T	p.Gly253Val	p.G253V	ENST00000267101	NM_001982.3	253	gGa/gTa																																																																														
RB1	0	MSKCC	GRCh37	13	48941727	48941728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	193	258	0	ENST00000267163.4:c.1039dup	p.Ser347PhefsTer6	p.S347Ffs*6	ENST00000267163	NM_000321.2	346	gat/gaTt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807863	3807863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	368	437	0	ENST00000262367.5:c.3556G>C	p.Glu1186Gln	p.E1186Q	ENST00000262367	NM_004380.2	1186	Gag/Cag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817853	3817853	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	377	506	0	ENST00000262367.5:c.3118G>C	p.Glu1040Gln	p.E1040Q	ENST00000262367	NM_004380.2	1040	Gag/Cag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3820785	3820785	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	435	570	0	ENST00000262367.5:c.2666C>G	p.Ser889Ter	p.S889*	ENST00000262367	NM_004380.2	889	tCa/tGa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16049694	16049694	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	365	405	0	ENST00000268712.3:c.1078C>T	p.Gln360Ter	p.Q360*	ENST00000268712	NM_006311.3	360	Cag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29663734	29663734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	377	470	0	ENST00000358273.4:c.6229G>A	p.Asp2077Asn	p.D2077N	ENST00000358273	NM_001042492.2	2077	Gat/Aat																																																																														
RPTOR	0	MSKCC	GRCh37	17	78933914	78933914	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	293	443	0	ENST00000306801.3:c.3514C>A	p.Leu1172Met	p.L1172M	ENST00000306801	NM_020761.2	1172	Ctg/Atg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10250949	10250949	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	284	405	0	ENST00000340748.4:c.3531C>G	p.Phe1177Leu	p.F1177L	ENST00000340748		1177	ttC/ttG																																																																														
INHA	0	MSKCC	GRCh37	2	220439764	220439764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	49	391	1	ENST00000243786.2:c.617C>T	p.Ser206Leu	p.S206L	ENST00000243786	NM_002191.3	206	tCa/tTa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266985	41266985	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	112	316	0	ENST00000349496.5:c.656A>G	p.His219Arg	p.H219R	ENST00000349496	NM_001904.3	219	cAt/cGt																																																																														
EZH2	0	MSKCC	GRCh37	7	148515070	148515070	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	260	312	0	ENST00000320356.2:c.1139C>G	p.Ser380Ter	p.S380*	ENST00000320356	NM_004456.4	380	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016151-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			620	311	947	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SOCS1	0	MSKCC	GRCh37	16	11348795	11348795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016151-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	61	396	1	ENST00000332029.2:c.541C>T	p.Arg181Cys	p.R181C	ENST00000332029	NM_003745.1	181	Cgc/Tgc																																																																														
SPEN	0	MSKCC	GRCh37	1	16255617	16255617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016151-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	91	654	0	ENST00000375759.3:c.2883del	p.Lys962SerfsTer12	p.K962Sfs*12	ENST00000375759	NM_015001.2	961	aGg/ag																																																																														
PTEN	0	MSKCC	GRCh37	10	89692932	89692932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016151-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	107	865	0	ENST00000371953.3:c.416T>C	p.Leu139Ser	p.L139S	ENST00000371953	NM_000314.4	139	tTa/tCa																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778099	27778099	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016151-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			768	97	856	2	ENST00000369163.2:c.248T>C	p.Leu83Ser	p.L83S	ENST00000369163	NM_003536.2	83	tTg/tCg																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778095	27778098	+	frameshift_variant	Frame_Shift_Del	DEL	GACT	GACT	-			P-0016151-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			768	97	850	0	ENST00000369163.2:c.244_247del	p.Asp82CysfsTer8	p.D82Cfs*8	ENST00000369163	NM_003536.2	82	GACTtg/tg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575157	48575157	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0016151-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			628	65	671	0	ENST00000342988.3:c.351T>G	p.Tyr117Ter	p.Y117*	ENST00000342988	NM_005359.5	117	taT/taG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	237	467	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37866662	37866662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	1071	653	1	ENST00000269571.5:c.829G>T	p.Asp277Tyr	p.D277Y	ENST00000269571		277	Gac/Tac																																																																														
RB1	0	MSKCC	GRCh37	13	48954187	48954187	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0016159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	112	286	0	ENST00000267163.4:c.1390-2A>G		p.X464_splice	ENST00000267163	NM_000321.2	464																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	153	507	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986670	36986674	+	frameshift_variant	Frame_Shift_Del	DEL	CCACC	CCACC	-			P-0016161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	18	34	0	ENST00000354822.5:c.1015_1019del	p.Gly339ArgfsTer98	p.G339Rfs*98	ENST00000354822	NM_001079668.2	339	GGTGGc/c																																																																														
EPHA7	0	MSKCC	GRCh37	6	93964501	93964501	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	57	380	0	ENST00000369303.4:c.2396del	p.Pro799GlnfsTer2	p.P799Qfs*2	ENST00000369303	NM_004440.3	799	cCa/ca																																																																														
CTCF	0	MSKCC	GRCh37	16	67645919	67645919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	77	626	1	ENST00000264010.4:c.847C>T	p.Arg283Cys	p.R283C	ENST00000264010	NM_006565.3	283	Cgt/Tgt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160648	56160663	+	frameshift_variant	Frame_Shift_Del	DEL	GTTAACAAAGTGATGC	GTTAACAAAGTGATGC	-			P-0016162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	47	488	0	ENST00000399503.3:c.923_938del	p.Val308GlyfsTer10	p.V308Gfs*10	ENST00000399503	NM_005921.1	308	GTTAACAAAGTGATGCgg/gg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178643	56178643	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	36	296	0	ENST00000399503.3:c.3617del	p.Pro1206LeufsTer39	p.P1206Lfs*39	ENST00000399503	NM_005921.1	1206	Cct/ct																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0016165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	188	669	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
SPOP	0	MSKCC	GRCh37	17	47677814	47677814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	93	699	0	ENST00000347630.2:c.1051G>C	p.Glu351Gln	p.E351Q	ENST00000347630	NM_001007230.1	351	Gag/Cag																																																																														
SESN1	0	MSKCC	GRCh37	6	109322692	109322692	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	77	583	0	ENST00000436639.2:c.346-1G>A		p.X116_splice	ENST00000436639	NM_014454.2	116																																																																															
AGO2	0	MSKCC	GRCh37	8	141554344	141554344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	137	822	1	ENST00000220592.5:c.1807G>T	p.Ala603Ser	p.A603S	ENST00000220592	NM_012154.3	603	Gcc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	295	650	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	256	769	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NSD1	0	MSKCC	GRCh37	5	176675248	176675248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201483724		P-0016169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	139	311	1	ENST00000439151.2:c.4564G>A	p.Asp1522Asn	p.D1522N	ENST00000439151	NM_022455.4	1522	Gat/Aat																																																																														
APC	0	MSKCC	GRCh37	5	112173669	112173670	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0016169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	197	436	0	ENST00000257430.4:c.2379_2380del	p.Tyr796TrpfsTer2	p.Y796Wfs*2	ENST00000257430	NM_000038.5	793	cAA/c																																																																														
PTEN	0	MSKCC	GRCh37	10	89653829	89653829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	151	530	0	ENST00000371953.3:c.127G>A	p.Glu43Lys	p.E43K	ENST00000371953	NM_000314.4	43	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112175747	112175748	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0016169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	134	340	0	ENST00000257430.4:c.4456_4457del	p.Asp1486TyrfsTer27	p.D1486Yfs*27	ENST00000257430	NM_000038.5	1486	GAt/t																																																																														
MYCL1	0	MSKCC	GRCh37	1	40367491	40367491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	10	30	0	ENST00000397332.2:c.70G>T	p.Gly24Cys	p.G24C	ENST00000397332	NM_001033082.2	24	Ggc/Tgc																																																																														
NUF2	0	MSKCC	GRCh37	1	163318761	163318761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	136	723	0	ENST00000271452.3:c.1151G>T	p.Arg384Ile	p.R384I	ENST00000271452	NM_145697.2	384	aGa/aTa																																																																														
GATA3	0	MSKCC	GRCh37	10	8106098	8106098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	79	438	0	ENST00000346208.3:c.918G>T	p.Arg306Ser	p.R306S	ENST00000346208		306	agG/agT																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852781	63852781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	50	436	0	ENST00000279873.7:c.3559A>G	p.Lys1187Glu	p.K1187E	ENST00000279873	NM_032199.2	1187	Aaa/Gaa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310883	123310883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	142	456	0	ENST00000358487.5:c.545G>T	p.Gly182Val	p.G182V	ENST00000358487	NM_000141.4	182	gGg/gTg																																																																														
FGF4	0	MSKCC	GRCh37	11	69589655	69589655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	26	119	0	ENST00000168712.1:c.198G>T	p.Glu66Asp	p.E66D	ENST00000168712	NM_002007.2	66	gaG/gaT																																																																														
CBL	0	MSKCC	GRCh37	11	119148933	119148933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	179	611	0	ENST00000264033.4:c.1153G>T	p.Ala385Ser	p.A385S	ENST00000264033	NM_005188.3	385	Gct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	256	636	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134018	41134018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	64	344	0	ENST00000379561.5:c.1610G>T	p.Arg537Leu	p.R537L	ENST00000379561	NM_002015.3	537	cGt/cTt																																																																														
IRS2	0	MSKCC	GRCh37	13	110437878	110437878	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	19	84	2	ENST00000375856.3:c.523G>T	p.Ala175Ser	p.A175S	ENST00000375856	NM_003749.2	175	Gcc/Tcc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88726646	88726646	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	79	468	0	ENST00000360948.2:c.395+3G>T		p.X132_splice	ENST00000360948	NM_001012338.2	132																																																																															
PLCG2	0	MSKCC	GRCh37	16	81971386	81971386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	51	535	0	ENST00000359376.3:c.3076G>T	p.Ala1026Ser	p.A1026S	ENST00000359376	NM_002661.3	1026	Gca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	361	716	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																														
NF1	0	MSKCC	GRCh37	17	29559143	29559151	+	inframe_deletion	In_Frame_Del	DEL	CCTCTGCAG	CCTCTGCAG	-			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	85	358	0	ENST00000358273.4:c.3253_3261del	p.Leu1085_Pro1087del	p.L1085_P1087del	ENST00000358273	NM_001042492.2	1084	CCTCTGCAG/-																																																																														
PPM1D	0	MSKCC	GRCh37	17	58711260	58711260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	263	651	1	ENST00000305921.3:c.748C>T	p.Arg250Ter	p.R250*	ENST00000305921	NM_003620.3	250	Cga/Tga																																																																														
JAK3	0	MSKCC	GRCh37	19	17942170	17942170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	75	485	0	ENST00000458235.1:c.2845G>T	p.Asp949Tyr	p.D949Y	ENST00000458235	NM_000215.3	949	Gac/Tac																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463268	25463268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	46	526	0	ENST00000264709.3:c.2225G>C	p.Arg742Pro	p.R742P	ENST00000264709	NM_175629.2	742	cGg/cCg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212652843	212652843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	38	551	0	ENST00000342788.4:c.463C>T	p.Leu155Phe	p.L155F	ENST00000342788	NM_005235.2	155	Ctt/Ttt																																																																														
PPARG	0	MSKCC	GRCh37	3	12458235	12458235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	263	496	0	ENST00000287820.6:c.852G>A	p.Met284Ile	p.M284I	ENST00000287820	NM_015869.4	284	atG/atA																																																																														
ATR	0	MSKCC	GRCh37	3	142286997	142286997	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	159	441	0	ENST00000350721.4:c.60-1G>C		p.X20_splice	ENST00000350721	NM_001184.3	20																																																																															
KDR	0	MSKCC	GRCh37	4	55956195	55956195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	112	597	0	ENST00000263923.4:c.3120C>A	p.Asn1040Lys	p.N1040K	ENST00000263923	NM_002253.2	1040	aaC/aaA																																																																														
TET2	0	MSKCC	GRCh37	4	106157911	106157911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	74	418	0	ENST00000380013.4:c.2812A>T	p.Thr938Ser	p.T938S	ENST00000380013	NM_001127208.2	938	Act/Tct																																																																														
INPP4B	0	MSKCC	GRCh37	4	143094924	143094924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	46	493	0	ENST00000262992.4:c.1220C>G	p.Thr407Arg	p.T407R	ENST00000262992	NM_001101669.1	407	aCa/aGa																																																																														
TERT	0	MSKCC	GRCh37	5	1255515	1255515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	99	470	0	ENST00000310581.5:c.3044G>T	p.Cys1015Phe	p.C1015F	ENST00000310581	NM_198253.2	1015	tGt/tTt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526384	31526384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	509	929	0	ENST00000344624.3:c.656G>T	p.Arg219Ile	p.R219I	ENST00000344624		219	aGa/aTa																																																																														
IL7R	0	MSKCC	GRCh37	5	35876172	35876172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	331	491	0	ENST00000303115.3:c.964G>C	p.Gly322Arg	p.G322R	ENST00000303115	NM_002185.3	322	Ggt/Cgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	72	474	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
MDC1	0	MSKCC	GRCh37	6	30673436	30673436	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	79	442	0	ENST00000376406.3:c.3524A>T	p.Asp1175Val	p.D1175V	ENST00000376406	NM_014641.2	1175	gAc/gTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967900	93967900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	94	691	1	ENST00000369303.4:c.2027G>A	p.Arg676Lys	p.R676K	ENST00000369303	NM_004440.3	676	aGg/aAg																																																																														
INHBA	0	MSKCC	GRCh37	7	41739753	41739753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	63	614	0	ENST00000242208.4:c.220G>T	p.Val74Phe	p.V74F	ENST00000242208	NM_002192.2	74	Gtc/Ttc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8389359	8389359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	88	596	1	ENST00000356435.5:c.4259G>T	p.Arg1420Met	p.R1420M	ENST00000356435		1420	aGg/aTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485815	8485815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	94	297	0	ENST00000356435.5:c.3002G>T	p.Gly1001Val	p.G1001V	ENST00000356435		1001	gGg/gTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528612	8528612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	84	452	2	ENST00000356435.5:c.520C>A	p.Arg174Ser	p.R174S	ENST00000356435		174	Cgt/Agt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528672	8528672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	72	363	1	ENST00000356435.5:c.460G>T	p.Asp154Tyr	p.D154Y	ENST00000356435		154	Gat/Tat																																																																														
ABL1	0	MSKCC	GRCh37	9	133750337	133750337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	88	532	0	ENST00000318560.5:c.1168G>A	p.Gly390Arg	p.G390R	ENST00000318560	NM_005157.4	390	Ggg/Agg																																																																														
RBM10	0	MSKCC	GRCh37	X	47038822	47038822	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	104	678	0	ENST00000329236.7:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000329236	NM_001204466.1	200	Cag/Tag																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223539	53223539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	55	386	0	ENST00000375401.3:c.3820G>C	p.Glu1274Gln	p.E1274Q	ENST00000375401	NM_004187.3	1274	Gag/Cag																																																																														
ATRX	0	MSKCC	GRCh37	X	76763931	76763931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	82	524	0	ENST00000373344.5:c.7377G>T	p.Met2459Ile	p.M2459I	ENST00000373344	NM_000489.3	2459	atG/atT																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	364	658	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
RB1	0	MSKCC	GRCh37	13	48923160	48923160	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	92	425	0	ENST00000267163.4:c.607+1G>T		p.X203_splice	ENST00000267163	NM_000321.2	203																																																																															
HGF	0	MSKCC	GRCh37	7	81335667	81335667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	85	643	0	ENST00000222390.5:c.1693C>T	p.Leu565Phe	p.L565F	ENST00000222390	NM_000601.4	565	Ctc/Ttc																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186505595	186505595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	62	402	1	ENST00000323963.5:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000323963		335	Cgc/Tgc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925711	114925711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	33	490	0	ENST00000543371.1:c.1789G>A	p.Val597Ile	p.V597I	ENST00000543371	NM_001198531.1	597	Gtc/Atc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	186	658	0	ENST00000335508.6:c.1998G>T	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaT																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291782	15291782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	62	619	0	ENST00000263388.2:c.2984C>T	p.Pro995Leu	p.P995L	ENST00000263388	NM_000435.2	995	cCg/cTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11317040	11317040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	232	432	3	ENST00000361445.4:c.454G>A	p.Ala152Thr	p.A152T	ENST00000361445	NM_004958.3	152	Gcc/Acc																																																																														
MPL	0	MSKCC	GRCh37	1	43803598	43803598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	22	517	2	ENST00000372470.3:c.79G>A	p.Asp27Asn	p.D27N	ENST00000372470	NM_005373.2	27	Gat/Aat																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741616	17741616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	60	241	0	ENST00000250003.3:c.287G>T	p.Trp96Leu	p.W96L	ENST00000250003	NM_002478.4	96	tGg/tTg																																																																														
ARID2	0	MSKCC	GRCh37	12	46242706	46242706	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	231	511	0	ENST00000334344.6:c.1668A>T	p.Leu556Phe	p.L556F	ENST00000334344	NM_152641.2	556	ttA/ttT																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914267	32914267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	109	525	0	ENST00000380152.3:c.5775G>T	p.Gln1925His	p.Q1925H	ENST00000380152		1925	caG/caT																																																																														
BRCA2	0	MSKCC	GRCh37	13	32944663	32944663	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	138	554	0	ENST00000380152.3:c.8456A>T	p.Asp2819Val	p.D2819V	ENST00000380152		2819	gAt/gTt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43724576	43724576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	89	786	1	ENST00000382044.4:c.3491G>T	p.Cys1164Phe	p.C1164F	ENST00000382044	NM_001141980.1	1164	tGt/tTt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678508	88678508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	63	439	3	ENST00000360948.2:c.1028G>T	p.Arg343Leu	p.R343L	ENST00000360948	NM_001012338.2	343	cGg/cTg																																																																														
TRAF7	0	MSKCC	GRCh37	16	2226265	2226265	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	104	526	0	ENST00000326181.6:c.1879-1G>T		p.X627_splice	ENST00000326181	NM_032271.2	627																																																																															
PLCG2	0	MSKCC	GRCh37	16	81972403	81972403	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	75	357	0	ENST00000359376.3:c.3199-3C>G		p.X1067_splice	ENST00000359376	NM_002661.3	1067																																																																															
ERCC3	0	MSKCC	GRCh37	2	128046263	128046263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	108	509	2	ENST00000285398.2:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000285398	NM_000122.1	334	Cgt/Tgt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743901	40743901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	122	590	0	ENST00000373198.4:c.3094G>T	p.Val1032Phe	p.V1032F	ENST00000373198	NM_133170.3	1032	Gtc/Ttc																																																																														
SHQ1	0	MSKCC	GRCh37	3	72873629	72873629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	76	567	0	ENST00000325599.8:c.673A>G	p.Lys225Glu	p.K225E	ENST00000325599	NM_018130.2	225	Aaa/Gaa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391007	89391007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	67	596	0	ENST00000336596.2:c.1073C>A	p.Thr358Asn	p.T358N	ENST00000336596	NM_005233.5	358	aCc/aAc																																																																														
FAM175A	0	MSKCC	GRCh37	4	84406209	84406209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	86	379	0	ENST00000321945.7:c.17C>A	p.Thr6Lys	p.T6K	ENST00000321945	NM_139076.2	6	aCg/aAg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526324	31526324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	147	731	0	ENST00000344624.3:c.716G>T	p.Gly239Val	p.G239V	ENST00000344624		239	gGg/gTg																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149514333	149514333	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	66	402	1	ENST00000261799.4:c.611A>T	p.Tyr204Phe	p.Y204F	ENST00000261799	NM_002609.3	204	tAc/tTc																																																																														
NSD1	0	MSKCC	GRCh37	5	176707798	176707798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	121	500	0	ENST00000439151.2:c.5855G>T	p.Arg1952Leu	p.R1952L	ENST00000439151	NM_022455.4	1952	cGg/cTg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32168950	32168950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	336	686	0	ENST00000375023.3:c.4083G>C	p.Glu1361Asp	p.E1361D	ENST00000375023	NM_004557.3	1361	gaG/gaC																																																																														
ROS1	0	MSKCC	GRCh37	6	117730786	117730786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	212	569	0	ENST00000368508.3:c.248G>T	p.Gly83Val	p.G83V	ENST00000368508	NM_002944.2	83	gGc/gTc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367257	50367257	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	73	376	0	ENST00000331340.3:c.64G>C	p.Asp22His	p.D22H	ENST00000331340	NM_006060.4	22	Gat/Cat																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945044	151945044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	26	458	0	ENST00000262189.6:c.2475G>T	p.Met825Ile	p.M825I	ENST00000262189	NM_170606.2	825	atG/atT																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741634	145741634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	182	624	0	ENST00000428558.2:c.869G>T	p.Gly290Val	p.G290V	ENST00000428558	NM_004260.3	290	gGg/gTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518262	8518262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	173	294	0	ENST00000356435.5:c.1129C>A	p.Arg377Ser	p.R377S	ENST00000356435		377	Cgc/Agc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139403335	139403335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	156	421	0	ENST00000277541.6:c.3158G>T	p.Gly1053Val	p.G1053V	ENST00000277541	NM_017617.3	1053	gGc/gTc																																																																														
TP53	0	MSKCC	GRCh37	17	7579374	7579376	+	missense_variant	Missense_Mutation	ONP	CCT	CCT	ACA			P-0016173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	607	226	0	ENST00000269305.4:c.311_313delinsTGT	p.Gln104_Gly105delinsLeuCys	p.Q104_G105delinsLC	ENST00000269305	NM_001126112.2	104	cAGGgc/cTGTgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	557	748	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	362	710	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576120	88576120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147160868		P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	114	706	0	ENST00000360948.2:c.1553G>A	p.Arg518His	p.R518H	ENST00000360948	NM_001012338.2	518	cGt/cAt																																																																														
STK11	0	MSKCC	GRCh37	19	1221228	1221228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	155	700	0	ENST00000326873.7:c.751G>T	p.Gly251Cys	p.G251C	ENST00000326873	NM_000455.4	251	Ggt/Tgt																																																																														
RET	0	MSKCC	GRCh37	10	43615044	43615044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	109	629	0	ENST00000355710.3:c.2458C>T	p.Arg820Cys	p.R820C	ENST00000355710	NM_020975.4	820	Cgc/Tgc																																																																														
PGR	0	MSKCC	GRCh37	11	100998264	100998264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	47	195	0	ENST00000325455.5:c.1538C>A	p.Pro513His	p.P513H	ENST00000325455	NM_001202474.3	513	cCt/cAt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52702643	52702643	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	164	495	0	ENST00000394830.3:c.255T>A	p.Tyr85Ter	p.Y85*	ENST00000394830	NM_018313.4	85	taT/taA																																																																														
DROSHA	0	MSKCC	GRCh37	5	31515154	31515154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	299	798	0	ENST00000344624.3:c.1231G>T	p.Val411Leu	p.V411L	ENST00000344624		411	Gtg/Ttg																																																																														
PREX2	0	MSKCC	GRCh37	8	69000039	69000039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	465	481	0	ENST00000288368.4:c.2108G>T	p.Gly703Val	p.G703V	ENST00000288368	NM_024870.2	703	gGa/gTa																																																																														
RECQL	0	MSKCC	GRCh37	12	21636316	21636316	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	118	591	0	ENST00000421138.2:c.694A>T	p.Arg232Ter	p.R232*	ENST00000421138		232	Aga/Tga																																																																														
FOXP1	0	MSKCC	GRCh37	3	71247478	71247478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	171	623	0	ENST00000318789.4:c.55G>T	p.Gly19Trp	p.G19W	ENST00000318789	NM_032682.5	19	Ggg/Tgg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55141089	55141089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	109	450	0	ENST00000257290.5:c.1735C>A	p.Gln579Lys	p.Q579K	ENST00000257290	NM_006206.4	579	Cag/Aag																																																																														
KDR	0	MSKCC	GRCh37	4	55955945	55955945	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	137	579	0	ENST00000263923.4:c.3217del	p.Ala1073ProfsTer29	p.A1073Pfs*29	ENST00000263923	NM_002253.2	1073	Gcc/cc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467794	66467794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	94	410	0	ENST00000273854.3:c.475G>T	p.Asp159Tyr	p.D159Y	ENST00000273854	NM_004439.5	159	Gat/Tat																																																																														
FAT1	0	MSKCC	GRCh37	4	187525001	187525001	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	125	612	2	ENST00000441802.2:c.10679C>A	p.Ser3560Ter	p.S3560*	ENST00000441802	NM_005245.3	3560	tCa/tAa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149499121	149499121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	111	487	1	ENST00000261799.4:c.2707C>A	p.Pro903Thr	p.P903T	ENST00000261799	NM_002609.3	903	Cct/Act																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874746	151874746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	176	334	0	ENST00000262189.6:c.7792G>T	p.Asp2598Tyr	p.D2598Y	ENST00000262189	NM_170606.2	2598	Gac/Tac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	251	518	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0016177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	80	343	0				ENST00000310581	NM_198253.2																																																																																
PBRM1	0	MSKCC	GRCh37	3	52637579	52637579	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	76	541	0	ENST00000394830.3:c.2737G>T	p.Glu913Ter	p.E913*	ENST00000394830	NM_018313.4	913	Gaa/Taa																																																																														
PTEN	0	MSKCC	GRCh37	10	89711903	89711903	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	118	497	0	ENST00000371953.3:c.521A>G	p.Tyr174Cys	p.Y174C	ENST00000371953	NM_000314.4	174	tAt/tGt																																																																														
EPCAM	0	MSKCC	GRCh37	2	47604194	47604194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	58	475	2	ENST00000263735.4:c.533C>A	p.Pro178Gln	p.P178Q	ENST00000263735	NM_002354.2	178	cCa/cAa																																																																														
GSK3B	0	MSKCC	GRCh37	3	119582406	119582406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs72548709		P-0016177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	45	257	0	ENST00000316626.5:c.995G>A	p.Arg332His	p.R332H	ENST00000316626		332	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7574024	7574025	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	112	616	0	ENST00000269305.4:c.1002dup	p.Arg335AlafsTer2	p.R335Afs*2	ENST00000269305	NM_001126112.2	334	-/G																																																																														
CASP8	0	MSKCC	GRCh37	2	202123028	202123028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	31	534	0	ENST00000358485.4:c.74C>T	p.Pro25Leu	p.P25L	ENST00000358485	NM_001080125.1	25	cCc/cTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187540841	187540841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	63	414	0	ENST00000441802.2:c.6899C>T	p.Thr2300Met	p.T2300M	ENST00000441802	NM_005245.3	2300	aCg/aTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187541084	187541084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	36	367	0	ENST00000441802.2:c.6656C>A	p.Thr2219Lys	p.T2219K	ENST00000441802	NM_005245.3	2219	aCa/aAa																																																																														
FAT1	0	MSKCC	GRCh37	4	187541660	187541660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	32	366	0	ENST00000441802.2:c.6080G>A	p.Arg2027His	p.R2027H	ENST00000441802	NM_005245.3	2027	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	308	412	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	308	591	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468490	89468490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	156	389	0	ENST00000336596.2:c.2024G>T	p.Gly675Val	p.G675V	ENST00000336596	NM_005233.5	675	gGa/gTa																																																																														
CSDE1	0	MSKCC	GRCh37	1	115262360	115262360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	142	414	0	ENST00000438362.2:c.2194G>C	p.Gly732Arg	p.G732R	ENST00000438362	NM_001242891.1	732	Ggc/Cgc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176145047	176145047	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			856	161	489	0	ENST00000367669.3:c.564G>T	p.Leu188Phe	p.L188F	ENST00000367669	NM_022457.5	188	ttG/ttT																																																																														
ARID2	0	MSKCC	GRCh37	12	46245192	46245192	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	128	395	1	ENST00000334344.6:c.3286C>T	p.Gln1096Ter	p.Q1096*	ENST00000334344	NM_152641.2	1096	Cag/Tag																																																																														
ARID2	0	MSKCC	GRCh37	12	46246344	46246344	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	124	396	0	ENST00000334344.6:c.4438G>T	p.Gly1480Ter	p.G1480*	ENST00000334344	NM_152641.2	1480	Gga/Tga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56494854	56494854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	118	325	0	ENST00000267101.3:c.3211G>C	p.Val1071Leu	p.V1071L	ENST00000267101	NM_001982.3	1071	Gtt/Ctt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112032	115112032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	149	617	3	ENST00000257566.3:c.1708C>A	p.Leu570Met	p.L570M	ENST00000257566	NM_016569.3	570	Ctg/Atg																																																																														
RB1	0	MSKCC	GRCh37	13	48941675	48941675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	39	328	0	ENST00000267163.4:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267163	NM_000321.2	329	Aaa/Gaa																																																																														
MGA	0	MSKCC	GRCh37	15	41961400	41961400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			256	249	319	3	ENST00000219905.7:c.308G>T	p.Arg103Leu	p.R103L	ENST00000219905	NM_001164273.1	103	cGc/cTc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2220715	2220715	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	96	317	0	ENST00000326181.6:c.332A>G	p.Glu111Gly	p.E111G	ENST00000326181	NM_032271.2	111	gAg/gGg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858649	9858649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	123	349	0	ENST00000330684.3:c.2752C>T	p.Pro918Ser	p.P918S	ENST00000330684	NM_001134407.1	918	Ccc/Tcc																																																																														
NF1	0	MSKCC	GRCh37	17	29676230	29676230	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			791	329	526	0	ENST00000358273.4:c.7282A>T	p.Lys2428Ter	p.K2428*	ENST00000358273	NM_001042492.2	2428	Aaa/Taa																																																																														
NF1	0	MSKCC	GRCh37	17	29683558	29683558	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			816	374	563	0	ENST00000358273.4:c.7701del	p.Met2569Ter	p.M2569*	ENST00000358273	NM_001042492.2	2566	Ccc/cc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244098	5244098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	298	495	0	ENST00000357368.4:c.1384G>T	p.Val462Phe	p.V462F	ENST00000357368	NM_002850.3	462	Gtc/Ttc																																																																														
POLD1	0	MSKCC	GRCh37	19	50918147	50918147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			386	531	684	1	ENST00000440232.2:c.2464G>T	p.Asp822Tyr	p.D822Y	ENST00000440232	NM_002691.3	822	Gac/Tac																																																																														
EPCAM	0	MSKCC	GRCh37	2	47607083	47607083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	122	499	0	ENST00000263735.4:c.833C>T	p.Ala278Val	p.A278V	ENST00000263735	NM_002354.2	278	gCa/gTa																																																																														
EPCAM	0	MSKCC	GRCh37	2	47613751	47613751	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			716	247	332	0	ENST00000263735.4:c.944A>T	p.Ter315LeuextTer12	p.*315Lext*12	ENST00000263735	NM_002354.2	315	tAa/tTa																																																																														
SHQ1	0	MSKCC	GRCh37	3	72891517	72891517	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	185	509	0	ENST00000325599.8:c.245G>C	p.Gly82Ala	p.G82A	ENST00000325599	NM_018130.2	82	gGc/gCc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670469	134670469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	272	434	1	ENST00000398015.3:c.380C>A	p.Ala127Asp	p.A127D	ENST00000398015	NM_004441.4	127	gCc/gAc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1977109	1977124	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCGGGGATAGACCA	CCTCGGGGATAGACCA	-			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			683	358	769	0	ENST00000382891.5:c.3603_3618del	p.Phe1201LeufsTer123	p.F1201Lfs*123	ENST00000382891	NM_133335.3	1201	ttCCTCGGGGATAGACCA/tt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143003199	143003199	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	230	335	0	ENST00000262992.4:c.2627T>A	p.Leu876Gln	p.L876Q	ENST00000262992	NM_001101669.1	876	cTg/cAg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143007369	143007369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			540	128	338	0	ENST00000262992.4:c.2415G>T	p.Leu805Phe	p.L805F	ENST00000262992	NM_001101669.1	805	ttG/ttT																																																																														
CSF1R	0	MSKCC	GRCh37	5	149452879	149452879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	282	402	0	ENST00000286301.3:c.1067C>A	p.Thr356Asn	p.T356N	ENST00000286301	NM_005211.3	356	aCc/aAc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149498414	149498414	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	216	386	0	ENST00000261799.4:c.2800T>A	p.Tyr934Asn	p.Y934N	ENST00000261799	NM_002609.3	934	Tat/Aat																																																																														
ARID1B	0	MSKCC	GRCh37	6	157517390	157517390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			827	157	437	0	ENST00000346085.5:c.3954G>C	p.Met1318Ile	p.M1318I	ENST00000346085	NM_020732.3	1318	atG/atC																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879363	151879363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	201	328	0	ENST00000262189.6:c.5582G>C	p.Arg1861Pro	p.R1861P	ENST00000262189	NM_170606.2	1861	cGg/cCg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87317294	87317294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	333	508	0	ENST00000277120.3:c.319G>T	p.Ala107Ser	p.A107S	ENST00000277120		107	Gct/Tct																																																																														
RBM10	0	MSKCC	GRCh37	X	47039610	47039610	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			147	276	221	0	ENST00000329236.7:c.829-1G>T		p.X277_splice	ENST00000329236	NM_001204466.1	277																																																																															
BLM	0	MSKCC	GRCh37	15	91358417	91358417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			836	64	710	0	ENST00000355112.3:c.4162G>A	p.Ala1388Thr	p.A1388T	ENST00000355112	NM_000057.2	1388	Gcg/Acg																																																																														
PIM1	0	MSKCC	GRCh37	6	37139264	37139264	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	24	242	0	ENST00000373509.5:c.604G>C	p.Asp202His	p.D202H	ENST00000373509	NM_002648.3	202	Gat/Cat																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	130	462	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0016182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	140	549	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	101	257	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604758	48604759	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCACTTACACCGGGCCC			P-0016182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	85	478	0	ENST00000342988.3:c.1583_1599dup	p.Gln534ThrfsTer9	p.Q534Tfs*9	ENST00000342988	NM_005359.5	527	att/atTCACTTACACCGGGCCCt																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	433	796	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	62	555	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380331	14380338	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGACTT	GCCGACTT	-			P-0016184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	56	276	0	ENST00000256196.4:c.79_86del	p.Lys27AlafsTer15	p.K27Afs*15	ENST00000256196		27	AAGTCGGCg/g																																																																														
EGFR	0	MSKCC	GRCh37	7	55266500	55266500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	148	592	0	ENST00000275493.2:c.2792A>G	p.Glu931Gly	p.E931G	ENST00000275493	NM_005228.3	931	gAa/gGa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610208	10610208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	164	657	0	ENST00000171111.5:c.502G>T	p.Val168Phe	p.V168F	ENST00000171111	NM_203500.1	168	Gtc/Ttc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49428629	49428629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	210	723	3	ENST00000301067.7:c.10321C>T	p.Gln3441Ter	p.Q3441*	ENST00000301067	NM_003482.3	3441	Cag/Tag																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805885	46805885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	105	382	0	ENST00000290295.7:c.71G>T	p.Gly24Val	p.G24V	ENST00000290295	NM_006361.5	24	gGg/gTg																																																																														
STK11	0	MSKCC	GRCh37	19	1207078	1207083	+	inframe_deletion	In_Frame_Del	DEL	GGGGAA	GGGGAA	-			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	149	673	0	ENST00000326873.7:c.168_173del	p.Glu57_Gly58del	p.E57_G58del	ENST00000326873	NM_000455.4	56	GGGGAA/-																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141395	11141452	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGCCCGTCAGGAACCACGAAGGCGGAGGACCGGGGCATGCTGCTGAAAACCTTCAAC	GTGCCCGTCAGGAACCACGAAGGCGGAGGACCGGGGCATGCTGCTGAAAACCTTCAAC	-			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	60	454	1	ENST00000344626.4:c.3383-10_3430del		p.X1128_splice	ENST00000344626	NM_003072.3	1128																																																																															
KMT2B	0	MSKCC	GRCh37	19	36223212	36223212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	138	873	1	ENST00000222270.7:c.5762C>T	p.Pro1921Leu	p.P1921L	ENST00000222270	NM_014727.1	1921	cCc/cTc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528635	89528635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	79	355	0	ENST00000336596.2:c.2935G>T	p.Gly979Cys	p.G979C	ENST00000336596	NM_005233.5	979	Ggc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	172	710	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	540	767	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	151	749	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0016187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	270	455	1	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0016187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	270	455	1	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916922	178916927	+	inframe_deletion	In_Frame_Del	DEL	ACCAGT	ACCAGT	-			P-0016187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	156	662	0	ENST00000263967.3:c.310_315del	p.Pro104_Val105del	p.P104_V105del	ENST00000263967	NM_006218.2	103	gaACCAGTa/gaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099071	27099071	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	331	652	0	ENST00000324856.7:c.3488del	p.Pro1163GlnfsTer17	p.P1163Qfs*17	ENST00000324856	NM_006015.4	1163	Cca/ca																																																																														
ELF3	0	MSKCC	GRCh37	1	201982299	201982364	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGTCCCCACAGATGGTTTTCGTGACTGCAAGAAGGGGGATCCCAAGCACGGGAAGCGGAAACGAGG	CGTCCCCACAGATGGTTTTCGTGACTGCAAGAAGGGGGATCCCAAGCACGGGAAGCGGAAACGAGG	-			P-0016187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	146	573	0	ENST00000359651.3:c.689-10_744del		p.X230_splice	ENST00000359651		230																																																																															
ERBB3	0	MSKCC	GRCh37	12	56481649	56481649	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	246	592	3	ENST00000267101.3:c.684T>A	p.His228Gln	p.H228Q	ENST00000267101	NM_001982.3	228	caT/caA																																																																														
EPHA5	0	MSKCC	GRCh37	4	66286225	66286225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	130	470	0	ENST00000273854.3:c.1461G>C	p.Leu487Phe	p.L487F	ENST00000273854	NM_004439.5	487	ttG/ttC																																																																														
TCF3	0	MSKCC	GRCh37	19	1619391	1619391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	48	605	1	ENST00000344749.5:c.1250C>T	p.Thr417Met	p.T417M	ENST00000344749	NM_001136139.2	417	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579427	7579427	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	58	593	0	ENST00000269305.4:c.260del	p.Pro87GlnfsTer36	p.P87Qfs*36	ENST00000269305	NM_001126112.2	87	cCa/ca																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0016190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	314	529	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0016190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	314	529	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0016190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	503	765	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
PRKD1	0	MSKCC	GRCh37	14	30396516	30396516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	336	621	1	ENST00000331968.5:c.203C>T	p.Ser68Leu	p.S68L	ENST00000331968	NM_002742.2	68	tCg/tTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151949099	151949100	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0016190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	379	654	0	ENST00000262189.6:c.1545_1546del	p.Met515IlefsTer3	p.M515Ifs*3	ENST00000262189	NM_170606.2	515	atGTat/atat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	114	588	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	59	463	0				ENST00000310581	NM_198253.2																																																																																
SMAD4	0	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	128	761	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa																																																																														
RAC1	0	MSKCC	GRCh37	7	6441974	6441974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	173	772	0	ENST00000356142.4:c.533C>T	p.Ala178Val	p.A178V	ENST00000356142	NM_018890.3	178	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0016191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	181	520	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NOTCH2	0	MSKCC	GRCh37	1	120468036	120468036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	78	661	0	ENST00000256646.2:c.4403C>T	p.Ser1468Phe	p.S1468F	ENST00000256646	NM_024408.3	1468	tCc/tTc																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67201675	67201675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	93	540	1	ENST00000312629.5:c.976C>T	p.Pro326Ser	p.P326S	ENST00000312629	NM_003952.2	326	Ccc/Tcc																																																																														
RAC1	0	MSKCC	GRCh37	7	6431604	6431604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	40	218	0	ENST00000356142.4:c.157C>A	p.Leu53Met	p.L53M	ENST00000356142	NM_018890.3	53	Ctg/Atg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139414006	139414006	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	199	609	0	ENST00000277541.6:c.754C>T	p.Gln252Ter	p.Q252*	ENST00000277541	NM_017617.3	252	Cag/Tag																																																																														
MED12	0	MSKCC	GRCh37	X	70356252	70356252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	99	350	1	ENST00000374080.3:c.5147G>A	p.Arg1716Gln	p.R1716Q	ENST00000374080		1716	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	385	635	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012383	176012386	+	frameshift_variant	Frame_Shift_Del	DEL	CCAA	CCAA	-			P-0016192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	312	684	2	ENST00000367669.3:c.1548_1551del	p.Cys516Ter	p.C516*	ENST00000367669	NM_022457.5	516	tgTTGG/tg																																																																														
CEBPA	0	MSKCC	GRCh37	19	33793064	33793064	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016193-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			419	31	292	0	ENST00000498907.2:c.257G>C	p.Arg86Pro	p.R86P	ENST00000498907	NM_004364.3	86	cGg/cCg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862767	9862767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	146	674	0	ENST00000330684.3:c.2536C>T	p.Arg846Cys	p.R846C	ENST00000330684	NM_001134407.1	846	Cgc/Tgc																																																																														
BAP1	0	MSKCC	GRCh37	3	52437286	52437286	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	161	847	0	ENST00000460680.1:c.1758del	p.Arg587AspfsTer30	p.R587Dfs*30	ENST00000460680	NM_004656.3	586	atC/at																																																																														
JAK1	0	MSKCC	GRCh37	1	65310572	65310572	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	160	491	0	ENST00000342505.4:c.2116G>A	p.Glu706Lys	p.E706K	ENST00000342505	NM_002227.2	706	Gag/Aag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	539	752	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123247617	123247617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	321	630	0	ENST00000358487.5:c.1874G>A	p.Arg625Gln	p.R625Q	ENST00000358487	NM_000141.4	625	cGa/cAa																																																																														
WT1	0	MSKCC	GRCh37	11	32421568	32421568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	176	519	0	ENST00000332351.3:c.1024G>A	p.Asp342Asn	p.D342N	ENST00000332351	NM_024426.4	342	Gat/Aat																																																																														
ATM	0	MSKCC	GRCh37	11	108200951	108200951	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	151	378	0	ENST00000278616.4:c.7318A>G	p.Lys2440Glu	p.K2440E	ENST00000278616	NM_000051.3	2440	Aag/Gag																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515210	103515210	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141763734		P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	199	537	0	ENST00000355739.4:c.1711C>T	p.Pro571Ser	p.P571S	ENST00000355739	NM_000123.3	571	Ccg/Tcg																																																																														
BLM	0	MSKCC	GRCh37	15	91333991	91333991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	515	704	2	ENST00000355112.3:c.2936G>A	p.Arg979Lys	p.R979K	ENST00000355112	NM_000057.2	979	aGa/aAa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9928072	9928072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	197	531	0	ENST00000330684.3:c.1667C>T	p.Ser556Phe	p.S556F	ENST00000330684	NM_001134407.1	556	tCt/tTt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274231	10274231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	136	361	1	ENST00000330684.3:c.38C>T	p.Pro13Leu	p.P13L	ENST00000330684	NM_001134407.1	13	cCg/cTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829181	72829181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	208	566	0	ENST00000268489.5:c.7400C>T	p.Pro2467Leu	p.P2467L	ENST00000268489	NM_006885.3	2467	cCc/cTc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72984478	72984478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	217	662	0	ENST00000268489.5:c.3106A>G	p.Asn1036Asp	p.N1036D	ENST00000268489	NM_006885.3	1036	Aac/Gac																																																																														
ERBB4	0	MSKCC	GRCh37	2	212570066	212570066	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	268	599	2	ENST00000342788.4:c.1175T>A	p.Phe392Tyr	p.F392Y	ENST00000342788	NM_005235.2	392	tTt/tAt																																																																														
INHA	0	MSKCC	GRCh37	2	220439983	220439983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	314	919	0	ENST00000243786.2:c.836G>A	p.Trp279Ter	p.W279*	ENST00000243786	NM_002191.3	279	tGg/tAg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713365	40713365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	318	691	0	ENST00000373198.4:c.4150G>A	p.Glu1384Lys	p.E1384K	ENST00000373198	NM_133170.3	1384	Gag/Aag																																																																														
PPARG	0	MSKCC	GRCh37	3	12475603	12475603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	272	556	0	ENST00000287820.6:c.1477C>T	p.Leu493Phe	p.L493F	ENST00000287820	NM_015869.4	493	Ctt/Ttt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266444	41266444	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	151	406	0	ENST00000349496.5:c.242-1G>A		p.X81_splice	ENST00000349496	NM_001904.3	81																																																																															
PBRM1	0	MSKCC	GRCh37	3	52713720	52713720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	183	418	0	ENST00000394830.3:c.8C>T	p.Ser3Phe	p.S3F	ENST00000394830	NM_018313.4	3	tCc/tTc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873103	134873104	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	191	676	2	ENST00000398015.3:c.1407_1408delinsTT	p.Arg470Trp	p.R470W	ENST00000398015	NM_004441.4	469	atCCgg/atTTgg																																																																														
WWTR1	0	MSKCC	GRCh37	3	149245705	149245705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	272	639	0	ENST00000360632.3:c.823G>C	p.Val275Leu	p.V275L	ENST00000360632	NM_015472.4	275	Gtt/Ctt																																																																														
TP63	0	MSKCC	GRCh37	3	189455608	189455608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	342	747	0	ENST00000264731.3:c.142G>A	p.Glu48Lys	p.E48K	ENST00000264731	NM_003722.4	48	Gaa/Aaa																																																																														
TP63	0	MSKCC	GRCh37	3	189585631	189585631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	198	545	0	ENST00000264731.3:c.892G>A	p.Glu298Lys	p.E298K	ENST00000264731	NM_003722.4	298	Gaa/Aaa																																																																														
KDR	0	MSKCC	GRCh37	4	55976866	55976866	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1824302		P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	316	768	0	ENST00000263923.4:c.1046G>A	p.Arg349Lys	p.R349K	ENST00000263923	NM_002253.2	349	aGa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	121	445	0				ENST00000310581	NM_198253.2																																																																																
APC	0	MSKCC	GRCh37	5	112175322	112175322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	131	357	0	ENST00000257430.4:c.4031C>T	p.Ser1344Leu	p.S1344L	ENST00000257430	NM_000038.5	1344	tCa/tTa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176524328	176524328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	238	722	0	ENST00000292408.4:c.2189C>T	p.Pro730Leu	p.P730L	ENST00000292408	NM_213647.1	730	cCc/cTc																																																																														
MDC1	0	MSKCC	GRCh37	6	30673415	30673415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	419	489	0	ENST00000376406.3:c.3545C>T	p.Pro1182Leu	p.P1182L	ENST00000376406	NM_014641.2	1182	cCc/cTc																																																																														
ROS1	0	MSKCC	GRCh37	6	117622236	117622236	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	222	654	0	ENST00000368508.3:c.6634C>T	p.Gln2212Ter	p.Q2212*	ENST00000368508	NM_002944.2	2212	Cag/Tag																																																																														
LATS1	0	MSKCC	GRCh37	6	149997822	149997822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	289	750	2	ENST00000253339.5:c.2645C>T	p.Pro882Leu	p.P882L	ENST00000253339		882	cCc/cTc																																																																														
MET	0	MSKCC	GRCh37	7	116435945	116435945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	223	644	0	ENST00000397752.3:c.3940G>A	p.Glu1314Lys	p.E1314K	ENST00000397752	NM_000245.2	1314	Gaa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465534	8465534	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	270	773	1	ENST00000356435.5:c.3646A>T	p.Asn1216Tyr	p.N1216Y	ENST00000356435		1216	Aac/Tac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500753	8500753	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	174	441	0	ENST00000356435.5:c.2128+1G>A		p.X710_splice	ENST00000356435		710																																																																															
NBN	0	MSKCC	GRCh37	8	90958423	90958423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs6413508		P-0016197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	195	604	1	ENST00000265433.3:c.2015C>T	p.Pro672Leu	p.P672L	ENST00000265433	NM_002485.4	672	cCa/cTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	119	491	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870920	12870965	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGACATGGAAGAGGCGAGCCAGCGCAAGTGGAATTTCGATTTT	CAGAGACATGGAAGAGGCGAGCCAGCGCAAGTGGAATTTCGATTTT	-			P-0016198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	30	319	0	ENST00000228872.4:c.151_196del	p.Asp51IlefsTer5	p.D51Ifs*5	ENST00000228872	NM_004064.3	49	tgCAGAGACATGGAAGAGGCGAGCCAGCGCAAGTGGAATTTCGATTTT/tg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56183308	56183308	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	181	462	0	ENST00000399503.3:c.4220del	p.Gly1407AspfsTer15	p.G1407Dfs*15	ENST00000399503	NM_005921.1	1406	caG/ca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151896545	151896545	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	95	345	0	ENST00000262189.6:c.4093-1G>T		p.X1365_splice	ENST00000262189	NM_170606.2	1365																																																																															
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1616	172	580	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	788	790	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
ATM	0	MSKCC	GRCh37	11	108122706	108122706	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	1044	682	1	ENST00000278616.4:c.1750C>T	p.Gln584Ter	p.Q584*	ENST00000278616	NM_000051.3	584	Cag/Tag																																																																														
MGA	0	MSKCC	GRCh37	15	42041888	42041888	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	401	591	1	ENST00000219905.7:c.6086del	p.Gly2029ValfsTer73	p.G2029Vfs*73	ENST00000219905	NM_001164273.1	2028	aGg/ag																																																																														
APC	0	MSKCC	GRCh37	5	112174029	112174029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	147	482	0	ENST00000257430.4:c.2738A>G	p.His913Arg	p.H913R	ENST00000257430	NM_000038.5	913	cAt/cGt																																																																														
CARD11	0	MSKCC	GRCh37	7	2946352	2946353	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1675	200	764	0	ENST00000396946.4:c.3384_3385delinsTA	p.Glu1129Lys	p.E1129K	ENST00000396946	NM_032415.4	1128	gtAGag/gtTAag																																																																														
FGFR1	0	MSKCC	GRCh37	8	38277253	38277253	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	146	571	2	ENST00000425967.3:c.1175C>T	p.Ala392Val	p.A392V	ENST00000425967	NM_001174067.1	392	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	372	630	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ERG	0	MSKCC	GRCh37	21	39755773	39755773	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	38	291	0	ENST00000288319.7:c.992C>G	p.Thr331Ser	p.T331S	ENST00000288319	NM_182918.3	331	aCc/aGc																																																																														
TET2	0	MSKCC	GRCh37	4	106196294	106196294	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	138	199	0	ENST00000380013.4:c.4627A>G	p.Arg1543Gly	p.R1543G	ENST00000380013	NM_001127208.2	1543	Aga/Gga																																																																														
MED12	0	MSKCC	GRCh37	X	70356309	70356309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	240	606	0	ENST00000374080.3:c.5204G>A	p.Arg1735His	p.R1735H	ENST00000374080		1735	cGc/cAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	75	247	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	169	616	0	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg																																																																														
RFWD2	0	MSKCC	GRCh37	1	175958501	175958501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	53	501	0	ENST00000367669.3:c.1844C>T	p.Ser615Phe	p.S615F	ENST00000367669	NM_022457.5	615	tCt/tTt																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871757	12871757	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0016202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	144	261	0	ENST00000228872.4:c.476-2A>G		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																															
TBX3	0	MSKCC	GRCh37	12	115117458	115117458	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0016202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	148	297	0	ENST00000257566.3:c.718-2A>G		p.X240_splice	ENST00000257566	NM_016569.3	240																																																																															
CDH1	0	MSKCC	GRCh37	16	68844102	68844122	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTTCTCTCACGCTGTGTCATC	CTTCTCTCACGCTGTGTCATC	-			P-0016202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	110	399	1	ENST00000261769.5:c.691_711del	p.Phe231_Ser237del	p.F231_S237del	ENST00000261769	NM_004360.3	230	ctCTTCTCTCACGCTGTGTCATCc/ctc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	49	539	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	39	470	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
CASP8	0	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	54	591	0	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1264	37	770	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	56	609	0	ENST00000371953.3:c.70G>C	p.Asp24His	p.D24H	ENST00000371953	NM_000314.4	24	Gac/Cac																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225530	26225530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	30	272	0	ENST00000360408.1:c.148C>T	p.Arg50Cys	p.R50C	ENST00000360408	NM_003532.2	50	Cgc/Tgc																																																																														
CCND1	0	MSKCC	GRCh37	11	69466026	69466028	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	49	685	0	ENST00000227507.2:c.866_868delACG	p.Asp289del	p.D289del	ENST00000227507	NM_053056.2	288	acCGAc/acc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	64	502	0	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	97	664	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099075	27099081	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCAGC	CTCCAGC	-			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	53	651	0	ENST00000324856.7:c.3491_3497del	p.Thr1164AsnfsTer14	p.T1164Nfs*14	ENST00000324856	NM_006015.4	1164	aCTCCAGCa/aa																																																																														
ATM	0	MSKCC	GRCh37	11	108128247	108128247	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	66	464	1	ENST00000278616.4:c.2294del	p.Asn765IlefsTer12	p.N765Ifs*12	ENST00000278616	NM_000051.3	764	Aaa/aa																																																																														
KDM5A	0	MSKCC	GRCh37	12	461379	461379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	74	498	2	ENST00000399788.2:c.1141C>T	p.Pro381Ser	p.P381S	ENST00000399788	NM_001042603.1	381	Cca/Tca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424478	49424478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	53	560	0	ENST00000301067.7:c.13745G>A	p.Gly4582Asp	p.G4582D	ENST00000301067	NM_003482.3	4582	gGc/gAc																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281963	49281963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	72	655	1	ENST00000282018.3:c.1010G>A	p.Ser337Asn	p.S337N	ENST00000282018	NM_020377.2	337	aGt/aAt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16062165	16062165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	59	567	0	ENST00000268712.3:c.641C>T	p.Ala214Val	p.A214V	ENST00000268712	NM_006311.3	214	gCt/gTt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	66	929	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
BBC3	0	MSKCC	GRCh37	19	47731487	47731487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	10	46	0	ENST00000449228.1:c.305G>A	p.Arg102His	p.R102H	ENST00000449228	NM_001127240.2	102	cGt/cAt																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264868	46264868	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	49	512	1	ENST00000371998.3:c.1738G>C	p.Val580Leu	p.V580L	ENST00000371998		580	Gtg/Ctg																																																																														
MLH1	0	MSKCC	GRCh37	3	37089141	37089141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	33	347	0	ENST00000231790.2:c.1863G>A	p.Met621Ile	p.M621I	ENST00000231790	NM_000249.3	621	atG/atA																																																																														
ARID1B	0	MSKCC	GRCh37	6	157405821	157405822	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	28	373	0	ENST00000346085.5:c.2067dup	p.Thr690HisfsTer73	p.T690Hfs*73	ENST00000346085	NM_020732.3	688	ctc/ctCc																																																																														
CARD11	0	MSKCC	GRCh37	7	2958182	2958182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	60	612	0	ENST00000396946.4:c.2550G>A	p.Met850Ile	p.M850I	ENST00000396946	NM_032415.4	850	atG/atA																																																																														
IKZF1	0	MSKCC	GRCh37	7	50444372	50444372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	32	318	0	ENST00000331340.3:c.302G>T	p.Ser101Ile	p.S101I	ENST00000331340	NM_006060.4	101	aGc/aTc																																																																														
ABL1	0	MSKCC	GRCh37	9	133760879	133760879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	75	821	1	ENST00000318560.5:c.3202G>A	p.Val1068Met	p.V1068M	ENST00000318560	NM_005157.4	1068	Gtg/Atg																																																																														
BCOR	0	MSKCC	GRCh37	X	39933419	39933419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	38	511	0	ENST00000378444.4:c.1180C>T	p.Pro394Ser	p.P394S	ENST00000378444	NM_001123385.1	394	Ccc/Tcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	105	591	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
ATM	0	MSKCC	GRCh37	11	108165730	108165730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	98	448	1	ENST00000278616.4:c.4853G>T	p.Arg1618Leu	p.R1618L	ENST00000278616	NM_000051.3	1618	cGa/cTa																																																																														
RAD51B	0	MSKCC	GRCh37	14	68878207	68878207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	138	353	2	ENST00000487270.1:c.920G>T	p.Arg307Leu	p.R307L	ENST00000487270	NM_133509.3	307	cGg/cTg																																																																														
SRC	0	MSKCC	GRCh37	20	36030041	36030041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	32	630	1	ENST00000358208.4:c.1076A>G	p.Lys359Arg	p.K359R	ENST00000358208		359	aAg/aGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47035952	47035953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	133	828	0	ENST00000329236.7:c.402dup	p.Lys135GlnfsTer4	p.K135Qfs*4	ENST00000329236	NM_001204466.1	133	-/C																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	172	588	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0016206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	205	678	3	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71021809	71021809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	74	272	0	ENST00000318789.4:c.1549C>T	p.Leu517Phe	p.L517F	ENST00000318789	NM_032682.5	517	Ctt/Ttt																																																																														
BAP1	0	MSKCC	GRCh37	3	52442488	52442488	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0016207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	346	529	0	ENST00000460680.1:c.255+2T>G		p.X85_splice	ENST00000460680	NM_004656.3	85																																																																															
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0016210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	95	449	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
SETD2	0	MSKCC	GRCh37	3	47098495	47098495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	108	332	1	ENST00000409792.3:c.6779C>T	p.Pro2260Leu	p.P2260L	ENST00000409792	NM_014159.6	2260	cCg/cTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3788657	3788657	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	137	559	0	ENST00000262367.5:c.4297T>A	p.Tyr1433Asn	p.Y1433N	ENST00000262367	NM_004380.2	1433	Tat/Aat																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911600	114911600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	59	564	2	ENST00000543371.1:c.1118C>T	p.Thr373Met	p.T373M	ENST00000543371	NM_001198531.1	373	aCg/aTg																																																																														
GREM1	0	MSKCC	GRCh37	15	33023248	33023248	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	94	695	0	ENST00000300177.4:c.357C>A	p.Tyr119Ter	p.Y119*	ENST00000300177	NM_001191322.1	119	taC/taA																																																																														
TP53	0	MSKCC	GRCh37	17	7578264	7578304	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGT	GATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGT	-			P-0016211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	376	623	2	ENST00000269305.4:c.560-15_585delACTGATTGCTCTTAGGTCTGGCCCCTCCTCAGCATCTTATC		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
SMARCB1	0	MSKCC	GRCh37	22	24145561	24145561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	58	518	0	ENST00000263121.7:c.580G>C	p.Glu194Gln	p.E194Q	ENST00000263121	NM_003073.3	194	Gag/Cag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106523501	106523501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	125	305	0	ENST00000359195.3:c.2653G>A	p.Ala885Thr	p.A885T	ENST00000359195	NM_002649.2	885	Gcc/Acc																																																																														
BCOR	0	MSKCC	GRCh37	X	39932659	39932659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	136	711	0	ENST00000378444.4:c.1940G>T	p.Arg647Met	p.R647M	ENST00000378444	NM_001123385.1	647	aGg/aTg																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	162	386	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
MEN1	0	MSKCC	GRCh37	11	64573826	64573826	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	111	324	0	ENST00000337652.1:c.942del	p.Lys315ArgfsTer58	p.K315Rfs*58	ENST00000337652	NM_130803.2	314	gcC/gc																																																																														
RHEB	0	MSKCC	GRCh37	7	151174424	151174431	+	frameshift_variant	Frame_Shift_Del	DEL	GATTGATG	GATTGATG	-			P-0016212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	153	475	0	ENST00000262187.5:c.263_270del	p.Thr88LysfsTer4	p.T88Kfs*4	ENST00000262187	NM_005614.3	88	aCATCAATC/a																																																																														
PRKD1	0	MSKCC	GRCh37	14	30108044	30108044	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	147	616	1	ENST00000331968.5:c.763C>T	p.Arg255Ter	p.R255*	ENST00000331968	NM_002742.2	255	Cga/Tga																																																																														
FH	0	MSKCC	GRCh37	1	241676905	241676905	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	201	412	1	ENST00000366560.3:c.376G>A	p.Glu126Lys	p.E126K	ENST00000366560	NM_000143.3	126	Gag/Aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89720732	89720732	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	21	163	0	ENST00000371953.3:c.883del	p.Leu295TyrfsTer12	p.L295Yfs*12	ENST00000371953	NM_000314.4	295	Cta/ta																																																																														
KMT2D	0	MSKCC	GRCh37	12	49442977	49442977	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	258	473	0	ENST00000301067.7:c.3931del	p.Arg1311AspfsTer19	p.R1311Dfs*19	ENST00000301067	NM_003482.3	1311	Aga/ga																																																																														
PRKD1	0	MSKCC	GRCh37	14	30194859	30194859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	372	523	0	ENST00000331968.5:c.286G>A	p.Gly96Arg	p.G96R	ENST00000331968	NM_002742.2	96	Gga/Aga																																																																														
RAD51D	0	MSKCC	GRCh37	17	33446588	33446588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	204	530	1	ENST00000335858.7:c.45G>T	p.Glu15Asp	p.E15D	ENST00000335858	NM_133629.2	15	gaG/gaT																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45657062	45657062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	260	325	0	ENST00000407780.3:c.94G>A	p.Asp32Asn	p.D32N	ENST00000407780	NM_001283052.1	32	Gac/Aac																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873549	151873549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	260	436	0	ENST00000262189.6:c.8989C>G	p.Gln2997Glu	p.Q2997E	ENST00000262189	NM_170606.2	2997	Caa/Gaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873797	151873797	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	154	286	0	ENST00000262189.6:c.8741C>G	p.Ser2914Ter	p.S2914*	ENST00000262189	NM_170606.2	2914	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577049	7577049	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	528	569	1	ENST00000269305.4:c.889delC	p.His297ThrfsTer48	p.H297Tfs*48	ENST00000269305	NM_001126112.2	297	Cac/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	14	601	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SETD2	0	MSKCC	GRCh37	3	47164505	47164505	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	86	319	0	ENST00000409792.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000409792	NM_014159.6	541	Cga/Tga																																																																														
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	194	669	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47044978	47044978	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	226	700	0	ENST00000329236.7:c.2073del	p.Ser692AlafsTer32	p.S692Afs*32	ENST00000329236	NM_001204466.1	690	ttC/tt																																																																														
ETV6	0	MSKCC	GRCh37	12	12038872	12038872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	128	501	0	ENST00000396373.4:c.1165A>G	p.Met389Val	p.M389V	ENST00000396373	NM_001987.4	389	Atg/Gtg																																																																														
NF1	0	MSKCC	GRCh37	17	29677233	29677233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	66	420	0	ENST00000358273.4:c.7354C>T	p.Arg2452Cys	p.R2452C	ENST00000358273	NM_001042492.2	2452	Cgc/Tgc																																																																														
PIM1	0	MSKCC	GRCh37	6	37138389	37138389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	52	442	0	ENST00000373509.5:c.38G>C	p.Arg13Pro	p.R13P	ENST00000373509	NM_002648.3	13	cGc/cCc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024546	31024546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	242	465	0	ENST00000375687.4:c.4031C>T	p.Ser1344Phe	p.S1344F	ENST00000375687	NM_015338.5	1344	tCc/tTc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143159048	143159048	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	127	348	0	ENST00000262992.4:c.805A>T	p.Ile269Phe	p.I269F	ENST00000262992	NM_001101669.1	269	Att/Ttt																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	131	389	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73047225	73047225	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C			P-0016222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	74	455	0	ENST00000356692.5:c.35-3T>C		p.X12_splice	ENST00000356692		12																																																																															
PRDM1	0	MSKCC	GRCh37	6	106553043	106553043	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	157	857	0	ENST00000369096.4:c.1011del	p.Ser338LeufsTer40	p.S338Lfs*40	ENST00000369096	NM_001198.3	336	agC/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	463	662	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023909	27023923	+	inframe_deletion	In_Frame_Del	DEL	GCTGCGGCGGCGGCA	GCTGCGGCGGCGGCA	-	rs751352361		P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	13	36	0	ENST00000324856.7:c.1029_1043del	p.Ala345_Ala349del	p.A345_A349del	ENST00000324856	NM_006015.4	339	GCTGCGGCGGCGGCA/-																																																																														
NF1	0	MSKCC	GRCh37	17	29654737	29654737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	262	319	0	ENST00000358273.4:c.5489G>T	p.Arg1830Leu	p.R1830L	ENST00000358273	NM_001042492.2	1830	cGc/cTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521481	8521481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	154	530	1	ENST00000356435.5:c.757G>A	p.Val253Ile	p.V253I	ENST00000356435		253	Gtt/Att																																																																														
GATA3	0	MSKCC	GRCh37	10	8100408	8100408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	437	708	3	ENST00000346208.3:c.382G>T	p.Gly128Trp	p.G128W	ENST00000346208		128	Ggg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16259745	16259745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	395	591	1	ENST00000375759.3:c.7010G>T	p.Arg2337Leu	p.R2337L	ENST00000375759	NM_015001.2	2337	cGa/cTa																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439770	51439772	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	185	201	0	ENST00000262662.1:c.338_340del	p.Glu113del	p.E113del	ENST00000262662		112	aAAGaa/aaa																																																																														
JUN	0	MSKCC	GRCh37	1	59248628	59248628	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	725	667	0	ENST00000371222.2:c.115A>C	p.Thr39Pro	p.T39P	ENST00000371222	NM_002228.3	39	Acc/Ccc																																																																														
JAK1	0	MSKCC	GRCh37	1	65311249	65311249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	138	449	0	ENST00000342505.4:c.2062A>G	p.Thr688Ala	p.T688A	ENST00000342505	NM_002227.2	688	Aca/Gca																																																																														
AKT3	0	MSKCC	GRCh37	1	243675649	243675650	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	77	322	0	ENST00000263826.5:c.1330_1331del	p.Ile444TyrfsTer6	p.I444Yfs*6	ENST00000263826	NM_005465.4	444	ATt/t																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741885	17741885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	20	47	0	ENST00000250003.3:c.556C>A	p.Pro186Thr	p.P186T	ENST00000250003	NM_002478.4	186	Ccg/Acg																																																																														
ARID2	0	MSKCC	GRCh37	12	46245280	46245280	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	262	363	2	ENST00000334344.6:c.3374A>T	p.Gln1125Leu	p.Q1125L	ENST00000334344	NM_152641.2	1125	cAa/cTa																																																																														
ARID2	0	MSKCC	GRCh37	12	46246477	46246477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	266	306	1	ENST00000334344.6:c.4571G>T	p.Arg1524Met	p.R1524M	ENST00000334344	NM_152641.2	1524	aGg/aTg																																																																														
FLT3	0	MSKCC	GRCh37	13	28601364	28601364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	164	435	0	ENST00000241453.7:c.2068A>G	p.Ile690Val	p.I690V	ENST00000241453	NM_004119.2	690	Att/Gtt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914376	32914376	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	126	416	0	ENST00000380152.3:c.5884A>G	p.Ile1962Val	p.I1962V	ENST00000380152		1962	Ata/Gta																																																																														
RB1	0	MSKCC	GRCh37	13	48947540	48947540	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	528	530	0	ENST00000267163.4:c.1128-1G>T		p.X376_splice	ENST00000267163	NM_000321.2	376																																																																															
TSHR	0	MSKCC	GRCh37	14	81528510	81528510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	421	443	0	ENST00000298171.2:c.189C>A	p.His63Gln	p.H63Q	ENST00000298171	NM_000369.2	63	caC/caA																																																																														
MGA	0	MSKCC	GRCh37	15	42053954	42053954	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	108	364	0	ENST00000219905.7:c.7418del	p.Gly2473AspfsTer2	p.G2473Dfs*2	ENST00000219905	NM_001164273.1	2472	caG/ca																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678358	88678358	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	369	475	0	ENST00000360948.2:c.1178del	p.Gly393AlafsTer21	p.G393Afs*21	ENST00000360948	NM_001012338.2	393	gGc/gc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88690618	88690618	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	243	393	0	ENST00000360948.2:c.412C>G	p.Arg138Gly	p.R138G	ENST00000360948	NM_001012338.2	138	Cgg/Ggg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99478243	99478243	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	86	238	0	ENST00000268035.6:c.3147C>G	p.Asn1049Lys	p.N1049K	ENST00000268035	NM_000875.3	1049	aaC/aaG																																																																														
CDH1	0	MSKCC	GRCh37	16	68835791	68835791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	319	443	0	ENST00000261769.5:c.382C>T	p.His128Tyr	p.H128Y	ENST00000261769	NM_004360.3	128	Cat/Tat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829422	72829422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	302	314	0	ENST00000268489.5:c.7159C>T	p.Pro2387Ser	p.P2387S	ENST00000268489	NM_006885.3	2387	Ccc/Tcc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81891922	81891922	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	417	511	0	ENST00000359376.3:c.392A>T	p.Gln131Leu	p.Q131L	ENST00000359376	NM_002661.3	131	cAg/cTg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81891959	81891959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	334	353	2	ENST00000359376.3:c.429G>T	p.Glu143Asp	p.E143D	ENST00000359376	NM_002661.3	143	gaG/gaT																																																																														
FANCA	0	MSKCC	GRCh37	16	89836401	89836401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	458	353	0	ENST00000389301.3:c.2348G>C	p.Gly783Ala	p.G783A	ENST00000389301	NM_000135.2	783	gGg/gCg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983735	15983735	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	251	359	0	ENST00000268712.3:c.3387A>T	p.Glu1129Asp	p.E1129D	ENST00000268712	NM_006311.3	1129	gaA/gaT																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245620	41245620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	356	514	0	ENST00000357654.3:c.1928G>A	p.Ser643Asn	p.S643N	ENST00000357654	NM_007294.3	643	aGt/aAt																																																																														
RNF43	0	MSKCC	GRCh37	17	56437549	56437549	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	198	551	2	ENST00000407977.2:c.913C>T	p.Gln305Ter	p.Q305*	ENST00000407977		305	Cag/Tag																																																																														
CENPA	0	MSKCC	GRCh37	2	27009138	27009138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	128	139	1	ENST00000335756.4:c.74G>T	p.Gly25Val	p.G25V	ENST00000335756	NM_001809.3	25	gGc/gTc																																																																														
ALK	0	MSKCC	GRCh37	2	29416141	29416141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	234	391	0	ENST00000389048.3:c.4812C>A	p.Tyr1604Ter	p.Y1604*	ENST00000389048	NM_004304.4	1604	taC/taA																																																																														
TOP1	0	MSKCC	GRCh37	20	39708734	39708734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	483	540	0	ENST00000361337.2:c.345A>T	p.Gln115His	p.Q115H	ENST00000361337	NM_003286.2	115	caA/caT																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264184	46264184	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	249	185	0	ENST00000371998.3:c.1231A>T	p.Met411Leu	p.M411L	ENST00000371998		411	Atg/Ttg																																																																														
SETD2	0	MSKCC	GRCh37	3	47129661	47129661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	376	561	0	ENST00000409792.3:c.5219G>T	p.Arg1740Leu	p.R1740L	ENST00000409792	NM_014159.6	1740	cGg/cTg																																																																														
KDR	0	MSKCC	GRCh37	4	55970819	55970819	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	140	385	0	ENST00000263923.4:c.1978A>T	p.Thr660Ser	p.T660S	ENST00000263923	NM_002253.2	660	Aca/Tca																																																																														
IL7R	0	MSKCC	GRCh37	5	35857105	35857105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	144	268	0	ENST00000303115.3:c.26G>C	p.Gly9Ala	p.G9A	ENST00000303115	NM_002185.3	9	gGc/gCc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67569844	67569844	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	220	204	0	ENST00000274335.5:c.502+3G>T		p.X168_splice	ENST00000274335		168																																																																															
NPM1	0	MSKCC	GRCh37	5	170819945	170819947	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	80	263	0	ENST00000296930.5:c.492_494del	p.Asp168del	p.D168del	ENST00000296930	NM_002520.6	163	GAT/-																																																																														
ROS1	0	MSKCC	GRCh37	6	117707014	117707014	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	633	506	0	ENST00000368508.3:c.2136G>A	p.Trp712Ter	p.W712*	ENST00000368508	NM_002944.2	712	tgG/tgA																																																																														
ESR1	0	MSKCC	GRCh37	6	152415529	152415529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	216	470	1	ENST00000206249.3:c.1379C>T	p.Thr460Ile	p.T460I	ENST00000206249	NM_000125.3	460	aCa/aTa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467654	50467654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	381	476	0	ENST00000331340.3:c.889G>T	p.Ala297Ser	p.A297S	ENST00000331340	NM_006060.4	297	Gcc/Tcc																																																																														
HGF	0	MSKCC	GRCh37	7	81336665	81336665	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	186	388	2	ENST00000222390.5:c.1557C>A	p.Cys519Ter	p.C519*	ENST00000222390	NM_000601.4	519	tgC/tgA																																																																														
AGO2	0	MSKCC	GRCh37	8	141554317	141554317	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	252	745	0	ENST00000220592.5:c.1834G>C	p.Ala612Pro	p.A612P	ENST00000220592	NM_012154.3	612	Gcc/Ccc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485243	8485243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	276	472	1	ENST00000356435.5:c.3137C>A	p.Ser1046Tyr	p.S1046Y	ENST00000356435		1046	tCc/tAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8501029	8501029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	68	211	0	ENST00000356435.5:c.1853G>T	p.Cys618Phe	p.C618F	ENST00000356435		618	tGc/tTc																																																																														
AMER1	0	MSKCC	GRCh37	X	63410720	63410720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	593	249	0	ENST00000330258.3:c.2447G>T	p.Arg816Leu	p.R816L	ENST00000330258	NM_152424.3	816	cGg/cTg																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123504132	123504134	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0016223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	124	254	0	ENST00000371139.4:c.313_315del	p.Lys105del	p.K105del	ENST00000371139	NM_001114937.2	103	gAGAag/gag																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	242	516	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247351	153247351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	144	447	0	ENST00000281708.4:c.1451G>T	p.Arg484Met	p.R484M	ENST00000281708	NM_033632.3	484	aGg/aTg																																																																														
ATM	0	MSKCC	GRCh37	11	108206590	108206590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	283	321	0	ENST00000278616.4:c.8170C>A	p.Gln2724Lys	p.Q2724K	ENST00000278616	NM_000051.3	2724	Caa/Aaa																																																																														
CSDE1	0	MSKCC	GRCh37	1	115280661	115280661	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	162	548	0	ENST00000438362.2:c.370C>G	p.Arg124Gly	p.R124G	ENST00000438362	NM_001242891.1	124	Cgg/Ggg																																																																														
NUF2	0	MSKCC	GRCh37	1	163307884	163307884	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	73	326	0	ENST00000271452.3:c.509+1G>T		p.X170_splice	ENST00000271452	NM_145697.2	170																																																																															
RRAS2	0	MSKCC	GRCh37	11	14300905	14300905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	30	138	1	ENST00000256196.4:c.593G>T	p.Gly198Val	p.G198V	ENST00000256196		198	gGc/gTc																																																																														
ATM	0	MSKCC	GRCh37	11	108138048	108138048	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	98	353	0	ENST00000278616.4:c.2617G>T	p.Gly873Ter	p.G873*	ENST00000278616	NM_000051.3	873	Gga/Tga																																																																														
TRAF7	0	MSKCC	GRCh37	16	2213964	2213964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1455	169	681	0	ENST00000326181.6:c.43G>A	p.Gly15Arg	p.G15R	ENST00000326181	NM_032271.2	15	Ggg/Agg																																																																														
NF1	0	MSKCC	GRCh37	17	29533281	29533281	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	41	231	0	ENST00000358273.4:c.1284G>C	p.Lys428Asn	p.K428N	ENST00000358273	NM_001042492.2	428	aaG/aaC																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812308	212812308	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201678258		P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	40	340	0	ENST00000342788.4:c.268G>T	p.Ala90Ser	p.A90S	ENST00000342788	NM_005235.2	90	Gct/Tct																																																																														
PAK7	0	MSKCC	GRCh37	20	9543672	9543672	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	103	343	0	ENST00000353224.5:c.1483-1G>T		p.X495_splice	ENST00000353224	NM_177990.2	495																																																																															
PTPRT	0	MSKCC	GRCh37	20	40739091	40739092	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	294	419	1	ENST00000373198.4:c.3192_3193delinsAA	p.Phe1064_His1065delinsLeuAsn	p.F1064_H1065delinsLN	ENST00000373198	NM_133170.3	1064	ttCCac/ttAAac																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133718	55133718	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	117	406	0	ENST00000257290.5:c.932-1G>T		p.X311_splice	ENST00000257290	NM_006206.4	311																																																																															
CSF1R	0	MSKCC	GRCh37	5	149436894	149436894	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	173	484	0	ENST00000286301.3:c.2275T>A	p.Ser759Thr	p.S759T	ENST00000286301	NM_005211.3	759	Tcc/Acc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149439423	149439423	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	159	426	0	ENST00000286301.3:c.1972C>A	p.Pro658Thr	p.P658T	ENST00000286301	NM_005211.3	658	Cct/Act																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138199821	138199821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	169	460	1	ENST00000237289.4:c.1239G>T	p.Lys413Asn	p.K413N	ENST00000237289	NM_001270507.1	413	aaG/aaT																																																																														
PREX2	0	MSKCC	GRCh37	8	68984770	68984770	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	138	509	0	ENST00000288368.4:c.1534A>G	p.Met512Val	p.M512V	ENST00000288368	NM_024870.2	512	Atg/Gtg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500937	8500937	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	52	336	0	ENST00000356435.5:c.1945T>A	p.Tyr649Asn	p.Y649N	ENST00000356435		649	Tac/Aac																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101911460	101911460	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	30	188	0	ENST00000374994.4:c.1387-2A>T		p.X463_splice	ENST00000374994	NM_004612.2	463																																																																															
RBM10	0	MSKCC	GRCh37	X	47039709	47039709	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	218	731	1	ENST00000329236.7:c.926+1G>A		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																															
AMER1	0	MSKCC	GRCh37	X	63412928	63412928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	210	757	0	ENST00000330258.3:c.239G>T	p.Gly80Val	p.G80V	ENST00000330258	NM_152424.3	80	gGt/gTt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	218	632	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																														
PTEN	0	MSKCC	GRCh37	10	89725045	89725046	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0016225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	34	228	0	ENST00000371953.3:c.1029_1030insGG	p.Lys344GlyfsTer9	p.K344Gfs*9	ENST00000371953	NM_000314.4	343	gtg/gtGGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	36	525	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793340	242793340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201540918		P-0016227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	66	794	0	ENST00000334409.5:c.737C>T	p.Thr246Met	p.T246M	ENST00000334409	NM_005018.2	246	aCg/aTg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467988	50467988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	30	436	3	ENST00000331340.3:c.1223G>A	p.Arg408His	p.R408H	ENST00000331340	NM_006060.4	408	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	544	657	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SESN3	0	MSKCC	GRCh37	11	94911069	94911069	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	106	505	0	ENST00000536441.1:c.1061A>G	p.Tyr354Cys	p.Y354C	ENST00000536441	NM_144665.3	354	tAt/tGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32945120	32945120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	59	405	0	ENST00000380152.3:c.8515T>C	p.Tyr2839His	p.Y2839H	ENST00000380152		2839	Tac/Cac																																																																														
IGF1R	0	MSKCC	GRCh37	15	99465417	99465417	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs147969557		P-0016233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	183	423	0	ENST00000268035.6:c.2242A>G	p.Thr748Ala	p.T748A	ENST00000268035	NM_000875.3	748	Acc/Gcc																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	154	482	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
PREX2	0	MSKCC	GRCh37	8	69020438	69020438	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	109	595	0	ENST00000288368.4:c.2810A>T	p.Asn937Ile	p.N937I	ENST00000288368	NM_024870.2	937	aAc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	175	517	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	74	430	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107180	27107180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	76	380	0	ENST00000324856.7:c.6791C>T	p.Ser2264Leu	p.S2264L	ENST00000324856	NM_006015.4	2264	tCa/tTa																																																																														
RB1	0	MSKCC	GRCh37	13	48916734	48916734	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	62	272	0	ENST00000267163.4:c.265-1G>T		p.X89_splice	ENST00000267163	NM_000321.2	89																																																																															
ARID1A	0	MSKCC	GRCh37	1	27106024	27106024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	58	320	2	ENST00000324856.7:c.5635C>T	p.Arg1879Trp	p.R1879W	ENST00000324856	NM_006015.4	1879	Cgg/Tgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561045	9561045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	26	229	0	ENST00000353224.5:c.737C>T	p.Ser246Phe	p.S246F	ENST00000353224	NM_177990.2	246	tCc/tTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099864	27099864	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	65	355	0	ENST00000324856.7:c.3743C>A	p.Ser1248Ter	p.S1248*	ENST00000324856	NM_006015.4	1248	tCa/tAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106676	27106676	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	80	421	0	ENST00000324856.7:c.6287C>G	p.Ser2096Ter	p.S2096*	ENST00000324856	NM_006015.4	2096	tCa/tGa																																																																														
CRKL	0	MSKCC	GRCh37	22	21288518	21288518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	113	348	0	ENST00000354336.3:c.763G>T	p.Ala255Ser	p.A255S	ENST00000354336	NM_005207.3	255	Gcc/Tcc																																																																														
MLH1	0	MSKCC	GRCh37	3	37035138	37035138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	38	227	0	ENST00000231790.2:c.100G>C	p.Glu34Gln	p.E34Q	ENST00000231790	NM_000249.3	34	Gag/Cag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521726	89521726	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	100	359	0	ENST00000336596.2:c.2803G>T	p.Val935Leu	p.V935L	ENST00000336596	NM_005233.5	935	Gtg/Ttg																																																																														
FLT4	0	MSKCC	GRCh37	5	180056756	180056756	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	209	497	3	ENST00000261937.6:c.756C>A	p.Cys252Ter	p.C252*	ENST00000261937	NM_182925.4	252	tgC/tgA																																																																														
AGO2	0	MSKCC	GRCh37	8	141559297	141559297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	97	394	0	ENST00000220592.5:c.1504G>C	p.Glu502Gln	p.E502Q	ENST00000220592	NM_012154.3	502	Gag/Cag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	211	641	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678568	88678568	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	36	260	0	ENST00000360948.2:c.968T>C	p.Phe323Ser	p.F323S	ENST00000360948	NM_001012338.2	323	tTt/tCt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81922878	81922878	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	46	322	0	ENST00000359376.3:c.867+1del		p.E289fs	ENST00000359376	NM_002661.3	289	gaG/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	137	646	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	151	557	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ERF	0	MSKCC	GRCh37	19	42752826	42752826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	347	683	0	ENST00000222329.4:c.1438C>T	p.Leu480Phe	p.L480F	ENST00000222329	NM_006494.2	480	Ctc/Ttc																																																																														
APC	0	MSKCC	GRCh37	5	112154869	112154870	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCA			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	41	470	0	ENST00000257430.4:c.1142_1145dup	p.Arg382SerfsTer16	p.R382Sfs*16	ENST00000257430	NM_000038.5	380	-/GCCA																																																																														
APC	0	MSKCC	GRCh37	5	112174268	112174277	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTTTGCA	AAGTTTTGCA	-			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	170	369	0	ENST00000257430.4:c.2977_2986del	p.Lys993ValfsTer9	p.K993Vfs*9	ENST00000257430	NM_000038.5	993	AAGTTTTGCAgt/gt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	44	421	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138202230	138202230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	69	418	0	ENST00000237289.4:c.2147G>C	p.Cys716Ser	p.C716S	ENST00000237289	NM_001270507.1	716	tGc/tCc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942756	44942757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0016235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	178	299	0	ENST00000377967.4:c.3336_3337insAA	p.Val1113LysfsTer8	p.V1113Kfs*8	ENST00000377967	NM_021140.2	1112	-/AA																																																																														
TP53	7157	MSKCC	GRCh37	17	7579433	7579433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1064793279		P-0016236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	94	465	1	ENST00000269305.4:c.254del	p.Pro85LeufsTer38	p.P85Lfs*38	ENST00000269305	NM_001126112.2	85	cCt/ct																																																																														
STAT5B	0	MSKCC	GRCh37	17	40354806	40354806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	125	539	0	ENST00000293328.3:c.2098G>A	p.Val700Met	p.V700M	ENST00000293328	NM_012448.3	700	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0016239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	192	414	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
GATA3	0	MSKCC	GRCh37	10	8097836	8097836	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	158	457	0	ENST00000346208.3:c.218A>T	p.Gln73Leu	p.Q73L	ENST00000346208		73	cAg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	170	370	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	275	347	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	77	279	0				ENST00000310581	NM_198253.2																																																																																
HOXB13	0	MSKCC	GRCh37	17	46805789	46805789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	92	311	0	ENST00000290295.7:c.167C>T	p.Ser56Leu	p.S56L	ENST00000290295	NM_006361.5	56	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	711	659	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SOX17	0	MSKCC	GRCh37	8	55371734	55371734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	139	456	1	ENST00000297316.4:c.424C>T	p.Arg142Cys	p.R142C	ENST00000297316	NM_022454.3	142	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7579344	7579345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	423	637	0	ENST00000269305.4:c.342dup	p.His115AlafsTer34	p.H115Afs*34	ENST00000269305	NM_001126112.2	114	-/G																																																																														
RNF43	0	MSKCC	GRCh37	17	56437556	56437556	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	398	628	0	ENST00000407977.2:c.906G>A	p.Trp302Ter	p.W302*	ENST00000407977		302	tgG/tgA																																																																														
ATR	0	MSKCC	GRCh37	3	142268418	142268418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	318	520	0	ENST00000350721.4:c.3074G>A	p.Arg1025His	p.R1025H	ENST00000350721	NM_001184.3	1025	cGt/cAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	250	365	0	ENST00000304494.5:c.281T>A	p.Leu94Gln	p.L94Q	ENST00000304494	NM_000077.4	94	cTg/cAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	250	365	0	ENST00000304494.5:c.281T>A	p.Leu94Gln	p.L94Q	ENST00000304494	NM_000077.4	94	cTg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	118	428	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	409	421	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306653	41306653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	166	430	0	ENST00000373198.4:c.1006G>A	p.Glu336Lys	p.E336K	ENST00000373198	NM_133170.3	336	Gag/Aag																																																																														
TSC2	0	MSKCC	GRCh37	16	2131787	2131787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	336	361	0	ENST00000219476.3:c.3802C>T	p.Arg1268Cys	p.R1268C	ENST00000219476	NM_000548.3	1268	Cgc/Tgc																																																																														
SPEN	0	MSKCC	GRCh37	1	16256832	16256832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	381	497	2	ENST00000375759.3:c.4097G>A	p.Arg1366Gln	p.R1366Q	ENST00000375759	NM_015001.2	1366	cGa/cAa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30132948	30132948	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	64	400	2	ENST00000331968.5:c.653C>A	p.Ser218Ter	p.S218*	ENST00000331968	NM_002742.2	218	tCa/tAa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827727	72827727	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	34	364	0	ENST00000268489.5:c.8854C>G	p.Gln2952Glu	p.Q2952E	ENST00000268489	NM_006885.3	2952	Caa/Gaa																																																																														
CDK12	0	MSKCC	GRCh37	17	37619264	37619264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2975	228	325	0	ENST00000447079.4:c.940G>A	p.Glu314Lys	p.E314K	ENST00000447079	NM_015083.1	314	Gaa/Aaa																																																																														
TCF3	0	MSKCC	GRCh37	19	1650196	1650196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199639167		P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	484	481	0	ENST00000344749.5:c.52G>A	p.Asp18Asn	p.D18N	ENST00000344749	NM_001136139.2	18	Gac/Aac																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18271782	18271782	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	501	489	0	ENST00000222254.8:c.466+3G>T		p.X156_splice	ENST00000222254	NM_005027.3	156																																																																															
INPP4A	0	MSKCC	GRCh37	2	99193530	99193530	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	195	387	0	ENST00000074304.5:c.2725G>C	p.Glu909Gln	p.E909Q	ENST00000074304	NM_001134224.1	909	Gag/Cag																																																																														
SETD2	0	MSKCC	GRCh37	3	47165621	47165621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	19	284	0	ENST00000409792.3:c.505C>T	p.His169Tyr	p.H169Y	ENST00000409792	NM_014159.6	169	Cat/Tat																																																																														
TERT	0	MSKCC	GRCh37	5	1294132	1294132	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147056740		P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	541	606	0	ENST00000310581.5:c.869C>T	p.Ser290Phe	p.S290F	ENST00000310581	NM_198253.2	290	tCt/tTt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509249	106509249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	365	455	0	ENST00000359195.3:c.1243G>C	p.Glu415Gln	p.E415Q	ENST00000359195	NM_002649.2	415	Gag/Cag																																																																														
PREX2	0	MSKCC	GRCh37	8	68992734	68992734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	230	508	0	ENST00000288368.4:c.1699G>A	p.Glu567Lys	p.E567K	ENST00000288368	NM_024870.2	567	Gag/Aag																																																																														
ARAF	0	MSKCC	GRCh37	X	47424202	47424202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	47	340	0	ENST00000377045.4:c.207G>C	p.Lys69Asn	p.K69N	ENST00000377045	NM_001654.4	69	aaG/aaC																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0016245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	143	244	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	60	318	5	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	75	402	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	57	249	0	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	207	352	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	276	305	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	490	541	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	298	320	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	274	396	2	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	276	394	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	104	346	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	127	443	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	489	361	0	ENST00000371953.3:c.389G>C	p.Arg130Pro	p.R130P	ENST00000371953	NM_000314.4	130	cGa/cCa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	191	350	0	ENST00000263967.3:c.1033A>G	p.Asn345Asp	p.N345D	ENST00000263967	NM_006218.2	345	Aat/Gat																																																																														
APC	0	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	148	399	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	249	278	2	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	253	559	5	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	66	173	1	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																														
CIC	0	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	423	560	6	ENST00000575354.2:c.3347dupC	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																														
APC	0	MSKCC	GRCh37	5	112151245	112151246	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	126	324	0	ENST00000257430.4:c.893_894del	p.His298LeufsTer28	p.H298Lfs*28	ENST00000257430	NM_000038.5	296	agCAca/agca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829404	72829404	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200268844		P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	357	339	0	ENST00000268489.5:c.7177G>A	p.Ala2393Thr	p.A2393T	ENST00000268489	NM_006885.3	2393	Gcc/Acc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149510166	149510166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	105	367	1	ENST00000261799.4:c.1303C>T	p.Arg435Cys	p.R435C	ENST00000261799	NM_002609.3	435	Cgc/Tgc																																																																														
MTOR	0	MSKCC	GRCh37	1	11298068	11298068	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	410	408	0	ENST00000361445.4:c.2040C>G	p.Asp680Glu	p.D680E	ENST00000361445	NM_004958.3	680	gaC/gaG																																																																														
SPEN	0	MSKCC	GRCh37	1	16262156	16262156	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	91	134	0	ENST00000375759.3:c.9421C>T	p.Gln3141Ter	p.Q3141*	ENST00000375759	NM_015001.2	3141	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057968	27057969	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	368	434	0	ENST00000324856.7:c.1676_1677del	p.Pro559LeufsTer63	p.P559Lfs*63	ENST00000324856	NM_006015.4	559	cCT/c																																																																														
MYCL	4610	MSKCC	GRCh37	1	40366987	40366987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	307	411	4	ENST00000397332.2:c.210del	p.Thr71ArgfsTer69	p.T71Rfs*69	ENST00000397332	NM_001033082.2	70	ccC/cc																																																																														
CSDE1	0	MSKCC	GRCh37	1	115279477	115279477	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs112486926		P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	81	383	2	ENST00000438362.2:c.541-1G>A		p.X181_splice	ENST00000438362	NM_001242891.1	181																																																																															
WT1	0	MSKCC	GRCh37	11	32456461	32456461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	307	299	1	ENST00000332351.3:c.431C>T	p.Pro144Leu	p.P144L	ENST00000332351	NM_024426.4	144	cCg/cTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427959	49427959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	300	417	1	ENST00000301067.7:c.10631C>T	p.Ala3544Val	p.A3544V	ENST00000301067	NM_003482.3	3544	gCc/gTc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487954	56487954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	213	385	1	ENST00000267101.3:c.1685C>T	p.Thr562Ile	p.T562I	ENST00000267101	NM_001982.3	562	aCt/aTt																																																																														
CD276	0	MSKCC	GRCh37	15	74000797	74000797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	44	235	0	ENST00000318443.5:c.1487G>A	p.Cys496Tyr	p.C496Y	ENST00000318443	NM_001024736.1	496	tGt/tAt																																																																														
BRD4	0	MSKCC	GRCh37	19	15353968	15353968	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	21	90	0	ENST00000263377.2:c.2912A>T	p.Gln971Leu	p.Q971L	ENST00000263377	NM_058243.2	971	cAg/cTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210440	36210440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	353	323	0	ENST00000222270.7:c.433C>T	p.Arg145Ter	p.R145*	ENST00000222270	NM_014727.1	145	Cga/Tga																																																																														
CIC	0	MSKCC	GRCh37	19	42797834	42797834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	94	394	1	ENST00000575354.2:c.3886G>A	p.Ala1296Thr	p.A1296T	ENST00000575354	NM_015125.3	1296	Gcc/Acc																																																																														
MSH2	0	MSKCC	GRCh37	2	47635555	47635556	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	55	289	0	ENST00000233146.2:c.229_230del	p.Ser77CysfsTer4	p.S77Cfs*4	ENST00000233146	NM_000251.2	76	cAG/c																																																																														
CHEK2	0	MSKCC	GRCh37	22	29115393	29115393	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	53	445	0	ENST00000328354.6:c.673delA	p.Thr225LeufsTer10	p.T225Lfs*10	ENST00000328354	NM_007194.3	225	Act/ct																																																																														
MITF	0	MSKCC	GRCh37	3	70005612	70005614	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	59	421	0	ENST00000352241.4:c.952_954del	p.Arg318del	p.R318del	ENST00000352241	NM_198159.2	315	cGAAga/cga																																																																														
BCL6	0	MSKCC	GRCh37	3	187449680	187449680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	101	400	2	ENST00000232014.4:c.200G>A	p.Cys67Tyr	p.C67Y	ENST00000232014	NM_001130845.1	67	tGc/tAc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449788	149449788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	380	448	0	ENST00000286301.3:c.1276del	p.Gln426SerfsTer4	p.Q426Sfs*4	ENST00000286301	NM_005211.3	426	Cag/ag																																																																														
MDC1	0	MSKCC	GRCh37	6	30679819	30679819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	85	307	0	ENST00000376406.3:c.1900G>A	p.Val634Met	p.V634M	ENST00000376406	NM_014641.2	634	Gtg/Atg																																																																														
ROS1	0	MSKCC	GRCh37	6	117739645	117739645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	270	367	0	ENST00000368508.3:c.148C>T	p.Pro50Ser	p.P50S	ENST00000368508	NM_002944.2	50	Cca/Tca																																																																														
PTCH1	0	MSKCC	GRCh37	9	98220494	98220494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	95	383	0	ENST00000331920.6:c.2969C>T	p.Ala990Val	p.A990V	ENST00000331920	NM_000264.3	990	gCa/gTa																																																																														
RXRA	0	MSKCC	GRCh37	9	137300837	137300837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	74	471	0	ENST00000481739.1:c.482G>A	p.Arg161Gln	p.R161Q	ENST00000481739	NM_002957.4	161	cGg/cAg																																																																														
RBM10	0	MSKCC	GRCh37	X	47044750	47044750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	279	495	0	ENST00000329236.7:c.1916C>T	p.Ala639Val	p.A639V	ENST00000329236	NM_001204466.1	639	gCc/gTc																																																																														
MTOR	0	MSKCC	GRCh37	1	11259440	11259440	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	39	302	0	ENST00000361445.4:c.4128T>A	p.Asp1376Glu	p.D1376E	ENST00000361445	NM_004958.3	1376	gaT/gaA																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14626974	14626974	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	73	489	0	ENST00000254322.2:c.801T>A	p.Cys267Ter	p.C267*	ENST00000254322	NM_006145.1	267	tgT/tgA																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	70	417	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	81	534	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	79	526	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
RAD54L	0	MSKCC	GRCh37	1	46743501	46743503	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	28	310	0	ENST00000371975.4:c.1885_1887del	p.Glu629del	p.E629del	ENST00000371975	NM_003579.3	628	GAG/-																																																																														
MDM4	0	MSKCC	GRCh37	1	204518305	204518305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	48	445	0	ENST00000367182.3:c.968G>T	p.Cys323Phe	p.C323F	ENST00000367182	NM_001278516.1	323	tGt/tTt																																																																														
KIT	0	MSKCC	GRCh37	4	55594086	55594086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	52	315	0	ENST00000288135.5:c.1872G>T	p.Met624Ile	p.M624I	ENST00000288135	NM_000222.2	624	atG/atT																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356130	66356130	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	91	390	0	ENST00000273854.3:c.1367A>T	p.Gln456Leu	p.Q456L	ENST00000273854	NM_004439.5	456	cAg/cTg																																																																														
MED12	0	MSKCC	GRCh37	X	70356445	70356446	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0016250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	80	654	1	ENST00000374080.3:c.5340_5341delinsTT	p.Glu1780_Glu1781delinsAspTer	p.E1780_E1781delinsD*	ENST00000374080		1780	gaGGaa/gaTTaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	424	256	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	378	427	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0016251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	19	32	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																														
INSR	0	MSKCC	GRCh37	19	7267597	7267597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	101	425	0	ENST00000302850.5:c.411G>A	p.Met137Ile	p.M137I	ENST00000302850	NM_000208.2	137	atG/atA																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651994	36651995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	145	343	0	ENST00000244741.5:c.119dup	p.Cys41LeufsTer7	p.C41Lfs*7	ENST00000244741	NM_000389.4	39	gcg/gcGg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435950	49435950	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	328	446	0	ENST00000301067.7:c.6031G>T	p.Glu2011Ter	p.E2011*	ENST00000301067	NM_003482.3	2011	Gag/Tag																																																																														
RB1	0	MSKCC	GRCh37	13	48951053	48951053	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0016251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	92	171	0	ENST00000267163.4:c.1216-1G>C		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																															
FOXA1	0	MSKCC	GRCh37	14	38061525	38061528	+	frameshift_variant	Frame_Shift_Del	DEL	CCGC	CCGC	-			P-0016251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	57	156	0	ENST00000250448.2:c.461_464del	p.Gly154AlafsTer39	p.G154Afs*39	ENST00000250448	NM_004496.3	154	gGCGGc/gc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061829	38061855	+	inframe_deletion	In_Frame_Del	DEL	TCATGGTGTTCATGGTCATGTAGGTGT	TCATGGTGTTCATGGTCATGTAGGTGT	-			P-0016251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	99	481	0	ENST00000250448.2:c.134_160del	p.Asn45_Met53del	p.N45_M53del	ENST00000250448	NM_004496.3	45	aACACCTACATGACCATGAACACCATGAct/act																																																																														
FANCA	0	MSKCC	GRCh37	16	89846317	89846317	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	103	417	0	ENST00000389301.3:c.1675G>C	p.Glu559Gln	p.E559Q	ENST00000389301	NM_000135.2	559	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7578554	7578555	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	AC	AC	TT			P-0016251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	64	481	2	ENST00000269305.4:c.376-1_376delinsAA		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
XIAP	0	MSKCC	GRCh37	X	123040842	123040842	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	342	244	0	ENST00000355640.3:c.1305T>G	p.Ile435Met	p.I435M	ENST00000355640		435	atT/atG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0016252-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	201	404	0				ENST00000310581	NM_198253.2																																																																																
RUNX1	0	MSKCC	GRCh37	21	36259154	36259154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016252-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	214	455	0	ENST00000300305.3:c.337C>G	p.Pro113Ala	p.P113A	ENST00000300305		113	Ccc/Gcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	13	957	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444766	49444767	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	29	1304	1	ENST00000301067.7:c.2699dup	p.Ser901ValfsTer2	p.S901Vfs*2	ENST00000301067	NM_003482.3	900	ctg/ctTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	280	498	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	143	660	2	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100312	27100312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	323	1143	2	ENST00000324856.7:c.4024C>T	p.Gln1342Ter	p.Q1342*	ENST00000324856	NM_006015.4	1342	Cag/Tag																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0016254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	289	976	2	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
ELF3	0	MSKCC	GRCh37	1	201981539	201981540	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0016254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	870	1186	2	ENST00000359651.3:c.453_454delinsTT	p.Gln151_Glu152delinsHisTer	p.Q151_E152delinsH*	ENST00000359651		151	caGGag/caTTag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445917	49445917	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	652	1308	1	ENST00000301067.7:c.1549G>T	p.Glu517Ter	p.E517*	ENST00000301067	NM_003482.3	517	Gag/Tag																																																																														
RAD51B	0	MSKCC	GRCh37	14	68290282	68290282	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138727212		P-0016254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	178	785	5	ENST00000487270.1:c.22C>T	p.Arg8Ter	p.R8*	ENST00000487270	NM_133509.3	8	Cga/Tga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729884	30729884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	98	447	0	ENST00000359013.4:c.1480G>C	p.Asp494His	p.D494H	ENST00000359013	NM_001024847.2	494	Gat/Cat																																																																														
SMO	0	MSKCC	GRCh37	7	128851507	128851507	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	212	836	0	ENST00000249373.3:c.1832C>G	p.Ser611Ter	p.S611*	ENST00000249373	NM_005631.4	611	tCa/tGa																																																																														
EGFR	0	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0016259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	182	681	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																														
INSR	0	MSKCC	GRCh37	19	7119529	7119529	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	107	703	0	ENST00000302850.5:c.3725A>C	p.Asn1242Thr	p.N1242T	ENST00000302850	NM_000208.2	1242	aAt/aCt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144092	11144092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	108	808	0	ENST00000344626.4:c.3673G>A	p.Asp1225Asn	p.D1225N	ENST00000344626	NM_003072.3	1225	Gac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	185	926	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	93	947	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1220443	1220443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	76	967	0	ENST00000326873.7:c.536C>G	p.Pro179Arg	p.P179R	ENST00000326873	NM_000455.4	179	cCg/cGg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88679765	88679765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	34	784	1	ENST00000360948.2:c.698G>A	p.Gly233Asp	p.G233D	ENST00000360948	NM_001012338.2	233	gGc/gAc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18443829	18443829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	49	632	0	ENST00000266497.5:c.802T>A	p.Ser268Thr	p.S268T	ENST00000266497		268	Tct/Act																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356278	66356278	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	35	773	0	ENST00000273854.3:c.1219G>C	p.Glu407Gln	p.E407Q	ENST00000273854	NM_004439.5	407	Gag/Cag																																																																														
ATRX	0	MSKCC	GRCh37	X	76889081	76889081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	74	887	0	ENST00000373344.5:c.4929G>T	p.Glu1643Asp	p.E1643D	ENST00000373344	NM_000489.3	1643	gaG/gaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	8	1042	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115970	8116001	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	TCACCGCCATGGGTTAGAGCCCTGCTCGATGC	TCACCGCCATGGGTTAGAGCCCTGCTCGATGC	-			P-0016262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	32	548	0	ENST00000346208.3:c.1320_*19delCGCCATGGGTTAGAGCCCTGCTCGATGCTCAC		p.*440fs*	ENST00000346208		439																																																																															
MTOR	0	MSKCC	GRCh37	1	11259394	11259394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	151	935	2	ENST00000361445.4:c.4174G>A	p.Ala1392Thr	p.A1392T	ENST00000361445	NM_004958.3	1392	Gca/Aca																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	158	963	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0016263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	231	1271	0	ENST00000269571.5:c.2305G>C	p.Asp769His	p.D769H	ENST00000269571		769	Gac/Cac																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	190	1065	1	ENST00000281708.4:c.1394G>T	p.Arg465Leu	p.R465L	ENST00000281708	NM_033632.3	465	cGt/cTt																																																																														
STAG2	0	MSKCC	GRCh37	X	123227869	123227869	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	32	389	1	ENST00000218089.9:c.3580C>T	p.Arg1194Trp	p.R1194W	ENST00000218089	NM_001042749.1	1194	Cgg/Tgg																																																																														
TBX3	0	MSKCC	GRCh37	12	115117308	115117309	+	splice_donor_variant	Splice_Site	INS	-	-	C			P-0016264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	37	537	0	ENST00000257566.3:c.864+1dup		p.X288_splice	ENST00000257566	NM_016569.3	288																																																																															
CDH1	0	MSKCC	GRCh37	16	68849464	68849483	+	splice_donor_variant,non_coding_transcript_exon_variant,intron_variant	Splice_Site	DEL	TGACGAATGTGGTACCTTTT	TGACGAATGTGGTACCTTTT	-			P-0016264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	94	894	0	ENST00000563916.1:n.343_347+15del		p.X115_splice	ENST00000563916		115																																																																															
MAP3K1	0	MSKCC	GRCh37	5	56177812	56177813	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0016264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	123	559	1	ENST00000399503.3:c.2789_2790del	p.Arg930ThrfsTer10	p.R930Tfs*10	ENST00000399503	NM_005921.1	929	GAg/g																																																																														
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	370	823	0	ENST00000288135.5:c.1676T>C	p.Val559Ala	p.V559A	ENST00000288135	NM_000222.2	559	gTt/gCt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10305575	10305575	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0016265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	92	724	1	ENST00000340748.4:c.1A>G	p.Met1?	p.M1?	ENST00000340748		1	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	323	1085	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	124	467	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	468	1049	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
MDM4	0	MSKCC	GRCh37	1	204518424	204518424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	401	756	1	ENST00000367182.3:c.1087C>T	p.Arg363Ter	p.R363*	ENST00000367182	NM_001278516.1	363	Cga/Tga																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849819	156849819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	173	721	0	ENST00000524377.1:c.2075G>A	p.Arg692His	p.R692H	ENST00000524377	NM_002529.3	692	cGc/cAc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118390695	118390695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	156	612	0	ENST00000534358.1:c.11345A>G	p.Asn3782Ser	p.N3782S	ENST00000534358	NM_005933.3	3782	aAc/aGc																																																																														
APC	0	MSKCC	GRCh37	5	112175346	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAAT	TTGAAT	A			P-0016266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	94	480	0	ENST00000257430.4:c.4055_4060delinsA	p.Val1352AspfsTer21	p.V1352Dfs*21	ENST00000257430	NM_000038.5	1352	gTTGAATtt/gAtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	137	909	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0016267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	89	675	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	104	601	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	104	601	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	104	601	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7579462	7579463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	100	852	0	ENST00000269305.4:c.224dup	p.Ala76CysfsTer73	p.A76Cfs*73	ENST00000269305	NM_001126112.2	75	cct/ccCt																																																																														
NTRK2	0	MSKCC	GRCh37	9	87338487	87338487	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	63	519	0	ENST00000277120.3:c.584-1G>A		p.X195_splice	ENST00000277120		195																																																																															
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0016268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	87	544	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	84	644	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691929	30691929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	31	345	0	ENST00000359013.4:c.506A>G	p.Asn169Ser	p.N169S	ENST00000359013	NM_001024847.2	169	aAt/aGt																																																																														
RXRA	0	MSKCC	GRCh37	9	137300900	137300900	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148741267		P-0016268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	89	616	0	ENST00000481739.1:c.545G>A	p.Arg182Gln	p.R182Q	ENST00000481739	NM_002957.4	182	cGg/cAg																																																																														
POLE	0	MSKCC	GRCh37	12	133218912	133218912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	23	662	4	ENST00000320574.5:c.5024G>A	p.Arg1675His	p.R1675H	ENST00000320574	NM_006231.2	1675	cGc/cAc																																																																														
ESR1	0	MSKCC	GRCh37	6	152420011	152420011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	13	484	1	ENST00000206249.3:c.1698C>A	p.Ser566Arg	p.S566R	ENST00000206249	NM_000125.3	566	agC/agA																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132464	11132468	+	stop_gained	Nonsense_Mutation	ONP	ACGCA	ACGCA	TAGCT			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	27	625	1	ENST00000344626.4:c.2680_2684delinsTAGCT	p.Thr894_Gln895delinsTer	p.T894_Q895delins*	ENST00000344626	NM_003072.3	894	ACGCAg/TAGCTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948719	71948719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	119	504	1	ENST00000298229.2:c.3431C>A	p.Ala1144Glu	p.A1144E	ENST00000298229	NM_001567.3	1144	gCg/gAg																																																																														
FANCA	0	MSKCC	GRCh37	16	89805055	89805055	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	10	552	0	ENST00000389301.3:c.4322A>G	p.Gln1441Arg	p.Q1441R	ENST00000389301	NM_000135.2	1441	cAg/cGg																																																																														
FANCA	0	MSKCC	GRCh37	16	89805065	89805065	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	12	519	1	ENST00000389301.3:c.4312A>T	p.Ser1438Cys	p.S1438C	ENST00000389301	NM_000135.2	1438	Agc/Tgc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37866648	37866648	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	16	596	0	ENST00000269571.5:c.815T>G	p.Val272Gly	p.V272G	ENST00000269571		272	gTc/gGc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302813	15302814	+	missense_variant	Missense_Mutation	DNP	TG	TG	CA			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	19	596	0	ENST00000263388.2:c.636_637inv	p.Arg213Gly	p.R213G	ENST00000263388	NM_000435.2	212	tgCAgg/tgTGgg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730828	40730828	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	15	658	0	ENST00000373198.4:c.3707G>C	p.Cys1236Ser	p.C1236S	ENST00000373198	NM_133170.3	1236	tGc/tCc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31515621	31515621	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	11	581	0	ENST00000344624.3:c.998T>C	p.Leu333Ser	p.L333S	ENST00000344624		333	tTa/tCa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741761	145741761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	89	519	0	ENST00000428558.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000428558	NM_004260.3	248	Cgt/Tgt																																																																														
FGFR1	0	MSKCC	GRCh37	8	38287313	38287313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	13	620	0	ENST00000425967.3:c.344C>G	p.Thr115Arg	p.T115R	ENST00000425967	NM_001174067.1	115	aCa/aGa																																																																														
IL7R	0	MSKCC	GRCh37	5	35876522	35876523	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0016269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	10	568	0	ENST00000303115.3:c.1315_1316dup	p.Ser440LeufsTer24	p.S440Lfs*24	ENST00000303115	NM_002185.3	438	-/AC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	172	684	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
RHEB	0	MSKCC	GRCh37	7	151181846	151181846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	128	417	0	ENST00000262187.5:c.169C>T	p.Gln57Ter	p.Q57*	ENST00000262187	NM_005614.3	57	Caa/Taa																																																																														
TBX3	0	MSKCC	GRCh37	12	115117387	115117388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0016270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	134	413	0	ENST00000257566.3:c.785_786dup	p.Leu263AsnfsTer20	p.L263Nfs*20	ENST00000257566	NM_016569.3	262	-/AA																																																																														
PALB2	0	MSKCC	GRCh37	16	23647589	23647589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	165	523	0	ENST00000261584.4:c.278G>A	p.Gly93Glu	p.G93E	ENST00000261584	NM_024675.3	93	gGa/gAa																																																																														
CDH1	0	MSKCC	GRCh37	16	68772259	68772260	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	202	730	0	ENST00000261769.5:c.109dup	p.Tyr37LeufsTer22	p.Y37Lfs*22	ENST00000261769	NM_004360.3	36	-/T																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096309	178096309	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	31	386	0	ENST00000397062.3:c.1022del	p.Asp341ValfsTer8	p.D341Vfs*8	ENST00000397062	NM_006164.4	341	gAt/gt																																																																														
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	300	754	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	282	579	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9782387	9782387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	111	674	2	ENST00000377346.4:c.2320G>A	p.Val774Met	p.V774M	ENST00000377346	NM_005026.3	774	Gtg/Atg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15961050	15961050	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	80	238	0	ENST00000268712.3:c.6170A>G	p.Gln2057Arg	p.Q2057R	ENST00000268712	NM_006311.3	2057	cAa/cGa																																																																														
STK11	0	MSKCC	GRCh37	19	1207054	1207054	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	266	618	1	ENST00000326873.7:c.142A>T	p.Lys48Ter	p.K48*	ENST00000326873	NM_000455.4	48	Aag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602253	10602254	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	171	451	0	ENST00000171111.5:c.1324_1325del	p.Arg442ValfsTer2	p.R442Vfs*2	ENST00000171111	NM_203500.1	442	AGg/g																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739078	40739078	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	87	472	0	ENST00000373198.4:c.3206G>A	p.Trp1069Ter	p.W1069*	ENST00000373198	NM_133170.3	1069	tGg/tAg																																																																														
APC	0	MSKCC	GRCh37	5	112178245	112178250	+	inframe_deletion	In_Frame_Del	DEL	TAGACC	TAGACC	-			P-0016271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	79	437	0	ENST00000257430.4:c.6956_6961del	p.Arg2319_Pro2320del	p.R2319_P2320del	ENST00000257430	NM_000038.5	2318	agTAGACCt/agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	82	438	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	20	284	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	193	881	0	ENST00000269305.4:c.402T>A	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttA																																																																														
BAP1	0	MSKCC	GRCh37	3	52441952	52441982	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGATGAAGGCACTGCAGCCTACCTCAGGGCT	GGATGAAGGCACTGCAGCCTACCTCAGGGCT	-			P-0016276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	81	257	0	ENST00000460680.1:c.367_375+22delAGCCCTGAGGTAGGCTGCAGTGCCTTCATCC		p.X123_splice	ENST00000460680	NM_004656.3	123																																																																															
RICTOR	0	MSKCC	GRCh37	5	38950676	38950676	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	78	344	0	ENST00000357387.3:c.3274A>G	p.Lys1092Glu	p.K1092E	ENST00000357387	NM_152756.3	1092	Aaa/Gaa																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045764	26045764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	31	265	0	ENST00000540144.1:c.127delC	p.Arg43AlafsTer20	p.R43Afs*20	ENST00000540144	NM_003531.2	42	taC/ta																																																																														
ROS1	0	MSKCC	GRCh37	6	117662589	117662589	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	50	409	0	ENST00000368508.3:c.4876T>G	p.Ser1626Ala	p.S1626A	ENST00000368508	NM_002944.2	1626	Tct/Gct																																																																														
ROS1	0	MSKCC	GRCh37	6	117663674	117663674	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	64	349	0	ENST00000368508.3:c.4558T>G	p.Leu1520Val	p.L1520V	ENST00000368508	NM_002944.2	1520	Tta/Gta																																																																														
PREX2	0	MSKCC	GRCh37	8	69005852	69005852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	64	445	0	ENST00000288368.4:c.2263C>A	p.Gln755Lys	p.Q755K	ENST00000288368	NM_024870.2	755	Caa/Aaa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971137	21971137	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs200429615		P-0016276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	39	262	0	ENST00000304494.5:c.221A>C	p.Asp74Ala	p.D74A	ENST00000304494	NM_000077.4	74	gAc/gCc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971137	21971137	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs200429615		P-0016276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	39	262	0	ENST00000304494.5:c.221A>C	p.Asp74Ala	p.D74A	ENST00000304494	NM_000077.4	74	gAc/gCc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0016278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	367	845	4	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	164	374	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	204	482	3	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
AMER1	0	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	350	783	2	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591894	48591894	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	221	455	0	ENST00000342988.3:c.1057T>C	p.Tyr353His	p.Y353H	ENST00000342988	NM_005359.5	353	Tac/Cac																																																																														
MPL	0	MSKCC	GRCh37	1	43812115	43812115	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	229	486	0	ENST00000372470.3:c.981-1G>T		p.X327_splice	ENST00000372470	NM_005373.2	327																																																																															
SMAD3	0	MSKCC	GRCh37	15	67457325	67457326	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCACGAGCTGCGGGCCATGGAGCTGTGTGAGTTCG			P-0016278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	28	643	0	ENST00000327367.4:c.308_309insGCGGGCCATGGAGCTGTGTGAGTTCGCCACGAGCT	p.Phe113ThrfsTer15	p.F113Tfs*15	ENST00000327367	NM_005902.3	100	cac/caCCACGAGCTGCGGGCCATGGAGCTGTGTGAGTTCGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577115	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGAT			P-0016278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	222	1019	0	ENST00000269305.4:c.783-11_823dup	p.Cys275TyrfsTer4	p.C275Yfs*4	ENST00000269305	NM_001126112.2	275	tgt/tATCCTGAGTAGTGGTAATCTACTGGGACGGAACAGCTTTGAGGTGCGTGTTTgt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25497895	25497895	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	69	571	0	ENST00000264709.3:c.554T>G	p.Met185Arg	p.M185R	ENST00000264709	NM_175629.2	185	aTg/aGg																																																																														
CARD11	0	MSKCC	GRCh37	7	2977626	2977626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1880	358	1089	0	ENST00000396946.4:c.1058C>T	p.Thr353Ile	p.T353I	ENST00000396946	NM_032415.4	353	aCc/aTc																																																																														
PMS2	0	MSKCC	GRCh37	7	6035190	6035190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	209	486	0	ENST00000265849.7:c.878A>G	p.Asn293Ser	p.N293S	ENST00000265849	NM_000535.5	293	aAc/aGc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	20	908	0	ENST00000335508.6:c.1998G>T	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaT																																																																														
TP53	0	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	31	837	1	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111523	8111524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	296	759	0	ENST00000346208.3:c.1010dup	p.Cys338LeufsTer14	p.C338Lfs*14	ENST00000346208		337	gtc/gTtc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032549	12032568	+	frameshift_variant	Frame_Shift_Del	DEL	AGTAATTCTGAGGAAAGGGA	AGTAATTCTGAGGAAAGGGA	-			P-0016285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	119	463	0	ENST00000353533.5:c.986_1005del	p.Ser329IlefsTer17	p.S329Ifs*17	ENST00000353533	NM_003010.3	329	AGTAATTCTGAGGAAAGGGAa/a																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251737	212251737	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	174	331	1	ENST00000342788.4:c.3322A>T	p.Asn1108Tyr	p.N1108Y	ENST00000342788	NM_005235.2	1108	Aat/Tat																																																																														
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	282	917	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	228	807	0	ENST00000335508.6:c.1874G>T	p.Arg625Leu	p.R625L	ENST00000335508	NM_012433.2	625	cGt/cTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0016287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	70	271	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0016287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	70	271	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0016287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	10	261	0	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																																																														
PTEN	0	MSKCC	GRCh37	10	89690799	89690810	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAGTTGTGCTG	TTAGTTGTGCTG	-			P-0016287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	132	629	1	ENST00000371953.3:c.210-4_217delTTAGTTGTGCTG		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
TP53	0	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	542	981	3	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
PGR	0	MSKCC	GRCh37	11	100998886	100998886	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	325	966	0	ENST00000325455.5:c.916G>C	p.Val306Leu	p.V306L	ENST00000325455	NM_001202474.3	306	Gtg/Ctg																																																																														
RECQL	0	MSKCC	GRCh37	12	21629878	21629878	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	122	1049	0	ENST00000421138.2:c.916A>C	p.Lys306Gln	p.K306Q	ENST00000421138		306	Aag/Cag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829989	72829990	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	301	869	0	ENST00000268489.5:c.6591_6592delCT	p.Phe2198GlnfsTer6	p.F2198Qfs*6	ENST00000268489	NM_006885.3	2197	ctCTtc/cttc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993196	72993196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	416	1330	2	ENST00000268489.5:c.849G>T	p.Met283Ile	p.M283I	ENST00000268489	NM_006885.3	283	atG/atT																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993399	72993399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	339	1003	0	ENST00000268489.5:c.646C>T	p.Pro216Ser	p.P216S	ENST00000268489	NM_006885.3	216	Ccg/Tcg																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045687	26045687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	87	277	0	ENST00000540144.1:c.49C>A	p.Pro17Thr	p.P17T	ENST00000540144	NM_003531.2	17	Ccg/Acg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	466	1029	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	1348	1232	1	ENST00000256078.4:c.34_35delinsAT	p.Gly12Ile	p.G12I	ENST00000256078	NM_033360.2	12	GGt/ATt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602583	10602584	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	255	1027	1	ENST00000171111.5:c.994_995delinsAT	p.Gly332Ile	p.G332I	ENST00000171111	NM_203500.1	332	GGc/ATc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212293132	212293132	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	132	830	1	ENST00000342788.4:c.2719+1G>T		p.X907_splice	ENST00000342788	NM_005235.2	907																																																																															
IRS1	0	MSKCC	GRCh37	2	227662985	227662985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	361	1015	0	ENST00000305123.5:c.470G>T	p.Gly157Val	p.G157V	ENST00000305123	NM_005544.2	157	gGa/gTa																																																																														
FAT1	0	MSKCC	GRCh37	4	187560926	187560926	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	110	872	0	ENST00000441802.2:c.3592A>G	p.Thr1198Ala	p.T1198A	ENST00000441802	NM_005245.3	1198	Act/Gct																																																																														
NSD1	0	MSKCC	GRCh37	5	176638003	176638003	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	203	1410	0	ENST00000439151.2:c.2603C>G	p.Ser868Cys	p.S868C	ENST00000439151	NM_022455.4	868	tCt/tGt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974669	21974669	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	152	974	0	ENST00000304494.5:c.150+8G>C		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974669	21974669	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	152	974	0	ENST00000304494.5:c.150+8G>C		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
RBM10	0	MSKCC	GRCh37	X	47045431	47045474	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCCAACATTCACATACACATACAAACTTTCAGCAAATGAAGTA	CCCCAACATTCACATACACATACAAACTTTCAGCAAATGAAGTA	-			P-0016290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	104	732	0	ENST00000329236.7:c.2197-31_2209del		p.X733_splice	ENST00000329236	NM_001204466.1	733																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	52	1120	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	17	611	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	373	754	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	254	362	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	136	472	1	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1597	395	912	0	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100980	41100980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	218	602	0	ENST00000373198.4:c.1376G>A	p.Arg459Gln	p.R459Q	ENST00000373198	NM_133170.3	459	cGg/cAg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	167	820	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244020	5244020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	532	797	2	ENST00000357368.4:c.1462G>A	p.Val488Met	p.V488M	ENST00000357368	NM_002850.3	488	Gtg/Atg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092759	27092759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	214	745	0	ENST00000324856.7:c.2780G>A	p.Gly927Glu	p.G927E	ENST00000324856	NM_006015.4	927	gGa/gAa																																																																														
RET	0	MSKCC	GRCh37	10	43604646	43604646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	175	740	0	ENST00000355710.3:c.1231T>C	p.Ser411Pro	p.S411P	ENST00000355710	NM_020975.4	411	Tcc/Ccc																																																																														
RET	0	MSKCC	GRCh37	10	43609029	43609029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	256	681	1	ENST00000355710.3:c.1785G>T	p.Glu595Asp	p.E595D	ENST00000355710	NM_020975.4	595	gaG/gaT																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779359	3779359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	291	573	0	ENST00000262367.5:c.5689C>T	p.Pro1897Ser	p.P1897S	ENST00000262367	NM_004380.2	1897	Ccc/Tcc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37866732	37866732	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0016293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	241	780	0	ENST00000269571.5:c.899C>G	p.Pro300Arg	p.P300R	ENST00000269571		300	cCc/cGc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850626	63850637	+	inframe_deletion	In_Frame_Del	DEL	ATCAGAGCAAGA	ATCAGAGCAAGA	-			P-0016294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	32	483	0	ENST00000279873.7:c.1405_1416del	p.Ser469_Glu472del	p.S469_E472del	ENST00000279873	NM_032199.2	468	tcATCAGAGCAAGAa/tca																																																																														
FGF3	0	MSKCC	GRCh37	11	69625353	69625353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	198	1013	0	ENST00000334134.2:c.440C>T	p.Pro147Leu	p.P147L	ENST00000334134	NM_005247.2	147	cCc/cTc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71943788	71943788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	57	1033	0	ENST00000298229.2:c.1831C>T	p.Arg611Cys	p.R611C	ENST00000298229	NM_001567.3	611	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	187	612	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32945141	32945141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	97	708	2	ENST00000380152.3:c.8536G>T	p.Glu2846Ter	p.E2846*	ENST00000380152		2846	Gag/Tag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198281602	198281602	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	90	535	0	ENST00000335508.6:c.529A>G	p.Lys177Glu	p.K177E	ENST00000335508	NM_012433.2	177	Aaa/Gaa																																																																														
ETV1	0	MSKCC	GRCh37	7	13978790	13978790	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	119	688	0	ENST00000405192.2:c.317A>C	p.Glu106Ala	p.E106A	ENST00000405192	NM_001163147.1	106	gAa/gCa																																																																														
SPOP	0	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	168	720	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																														
ARID2	0	MSKCC	GRCh37	12	46254714	46254714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	119	488	0	ENST00000334344.6:c.4904T>C	p.Leu1635Pro	p.L1635P	ENST00000334344	NM_152641.2	1635	cTg/cCg																																																																														
TP53	0	MSKCC	GRCh37	17	7577107	7577108	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0016307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	214	874	0	ENST00000269305.4:c.830_831del	p.Cys277SerfsTer28	p.C277Sfs*28	ENST00000269305	NM_001126112.2	277	tGT/t																																																																														
PTPRT	0	MSKCC	GRCh37	20	41420101	41420101	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	79	316	0	ENST00000373198.4:c.220T>G	p.Phe74Val	p.F74V	ENST00000373198	NM_133170.3	74	Ttc/Gtc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0016309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	190	738	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591895	48591895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	28	510	0	ENST00000342988.3:c.1058A>G	p.Tyr353Cys	p.Y353C	ENST00000342988	NM_005359.5	353	tAc/tGc																																																																														
MTOR	0	MSKCC	GRCh37	1	11301665	11301665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	55	622	0	ENST00000361445.4:c.1486G>C	p.Gly496Arg	p.G496R	ENST00000361445	NM_004958.3	496	Ggc/Cgc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111884632	111884632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	63	563	0	ENST00000341259.2:c.808G>C	p.Asp270His	p.D270H	ENST00000341259	NM_005475.2	270	Gac/Cac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144110	11144110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	58	788	2	ENST00000344626.4:c.3691G>A	p.Ala1231Thr	p.A1231T	ENST00000344626	NM_003072.3	1231	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0016311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	201	372	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
FGF19	0	MSKCC	GRCh37	11	69518602	69518602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	107	477	0	ENST00000294312.3:c.43G>A	p.Gly15Ser	p.G15S	ENST00000294312	NM_005117.2	15	Ggc/Agc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911551	32911551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	25	306	0	ENST00000380152.3:c.3059C>T	p.Ser1020Phe	p.S1020F	ENST00000380152		1020	tCt/tTt																																																																														
RAD50	0	MSKCC	GRCh37	5	131951721	131951721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	51	339	0	ENST00000265335.6:c.3063C>A	p.Asn1021Lys	p.N1021K	ENST00000265335		1021	aaC/aaA																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061317	38061317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	360	662	0	ENST00000250448.2:c.672C>A	p.Phe224Leu	p.F224L	ENST00000250448	NM_004496.3	224	ttC/ttA																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	332	452	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578415	7578415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	170	548	0	ENST00000269305.4:c.515T>A	p.Val172Asp	p.V172D	ENST00000269305	NM_001126112.2	172	gTt/gAt																																																																														
POLD1	0	MSKCC	GRCh37	19	50906453	50906453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	206	655	1	ENST00000440232.2:c.1114G>A	p.Glu372Lys	p.E372K	ENST00000440232	NM_002691.3	372	Gag/Aag																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101908795	101908795	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	47	421	0	ENST00000374994.4:c.1159T>G	p.Ser387Ala	p.S387A	ENST00000374994	NM_004612.2	387	Tcc/Gcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0016318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	271	615	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	186	437	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	240	640	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	140	306	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
RB1	0	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	174	363	1	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																															
TCF7L2	0	MSKCC	GRCh37	10	114910752	114910753	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	CTAGGTTCCCTCCCCATATGGTCCCACTC			P-0016318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	148	468	0	ENST00000543371.1:c.898_899insTCCTAGGTTCCCTCCCCATATGGTCCCAC		p.X300_splice	ENST00000543371	NM_001198531.1	300																																																																															
APC	0	MSKCC	GRCh37	5	112174344	112174345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGAGAACTAGATACACCAATAAATTATAGTCTTAAATATTCAGATGAGCAG			P-0016318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	57	366	0	ENST00000257430.4:c.3055_3106dup	p.Leu1036TrpfsTer10	p.L1036Wfs*10	ENST00000257430	NM_000038.5	1018	gat/gaTGGAGAACTAGATACACCAATAAATTATAGTCTTAAATATTCAGATGAGCAGt																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964333	70964333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	99	249	1	ENST00000276594.2:c.1695G>A	p.Met565Ile	p.M565I	ENST00000276594	NM_024504.3	565	atG/atA																																																																														
SESN3	0	MSKCC	GRCh37	11	94906474	94906474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	46	457	0	ENST00000536441.1:c.1424G>A	p.Arg475Gln	p.R475Q	ENST00000536441	NM_144665.3	475	cGa/cAa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420670	49420670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	31	491	1	ENST00000301067.7:c.15079C>T	p.Arg5027Ter	p.R5027*	ENST00000301067	NM_003482.3	5027	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0016322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	726	644	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
TCF3	0	MSKCC	GRCh37	19	1619849	1619849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	434	527	0	ENST00000344749.5:c.1097C>T	p.Thr366Met	p.T366M	ENST00000344749	NM_001136139.2	366	aCg/aTg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528324	157528324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	554	557	1	ENST00000346085.5:c.6049C>T	p.Leu2017Phe	p.L2017F	ENST00000346085	NM_020732.3	2017	Ctc/Ttc																																																																														
CTCF	0	MSKCC	GRCh37	16	67663388	67663388	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	267	370	0	ENST00000264010.4:c.1789G>T	p.Gly597Ter	p.G597*	ENST00000264010	NM_006565.3	597	Gga/Tga																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665562	138665562	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0016325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	175	280	0	ENST00000330315.3:c.3G>A	p.Met1?	p.M1?	ENST00000330315	NM_023067.3	1	atG/atA																																																																														
RASA1	0	MSKCC	GRCh37	5	86564534	86564534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	37	256	0	ENST00000274376.6:c.266G>C	p.Gly89Ala	p.G89A	ENST00000274376	NM_002890.2	89	gGa/gCa																																																																														
MYC	0	MSKCC	GRCh37	8	128750975	128750975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	40	230	2	ENST00000377970.2:c.512G>T	p.Arg171Leu	p.R171L	ENST00000377970	NM_002467.4	171	cGc/cTc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244368	5244368	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	286	475	1	ENST00000357368.4:c.1114C>T	p.Gln372Ter	p.Q372*	ENST00000357368	NM_002850.3	372	Caa/Taa																																																																														
BAP1	0	MSKCC	GRCh37	3	52442623	52442623	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0016326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	123	216	0	ENST00000460680.1:c.123-1G>C		p.X41_splice	ENST00000460680	NM_004656.3	41																																																																															
ABL1	0	MSKCC	GRCh37	9	133750257	133750257	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0016326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	185	303	0	ENST00000318560.5:c.1088A>G	p.Asp363Gly	p.D363G	ENST00000318560	NM_005157.4	363	gAt/gGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	253	349	0				ENST00000310581	NM_198253.2																																																																																
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	759	619	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9984848	9984848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	264	482	0	ENST00000330684.3:c.1117G>A	p.Glu373Lys	p.E373K	ENST00000330684	NM_001134407.1	373	Gaa/Aaa																																																																														
TP63	0	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	308	487	3	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
PPP6C	0	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	485	470	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
FLT4	0	MSKCC	GRCh37	5	180047693	180047693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	324	534	0	ENST00000261937.6:c.2322G>A	p.Met774Ile	p.M774I	ENST00000261937	NM_182925.4	774	atG/atA																																																																														
TSC1	0	MSKCC	GRCh37	9	135801065	135801065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	544	483	0	ENST00000298552.3:c.272C>T	p.Ser91Leu	p.S91L	ENST00000298552	NM_001162426.1	91	tCg/tTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222978	5222978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	351	521	0	ENST00000357368.4:c.2825C>T	p.Ser942Leu	p.S942L	ENST00000357368	NM_002850.3	942	tCg/tTg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367239	50367239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	222	282	0	ENST00000331340.3:c.46G>A	p.Glu16Lys	p.E16K	ENST00000331340	NM_006060.4	16	Gaa/Aaa																																																																														
RET	0	MSKCC	GRCh37	10	43615574	43615574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201487882		P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	324	504	0	ENST00000355710.3:c.2653G>A	p.Gly885Arg	p.G885R	ENST00000355710	NM_020975.4	885	Ggg/Agg																																																																														
LMO1	0	MSKCC	GRCh37	11	8251941	8251941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	344	482	2	ENST00000335790.3:c.136G>A	p.Glu46Lys	p.E46K	ENST00000335790	NM_002315.2	46	Gaa/Aaa																																																																														
LATS2	0	MSKCC	GRCh37	13	21553849	21553849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	346	516	0	ENST00000382592.4:c.2753C>T	p.Pro918Leu	p.P918L	ENST00000382592	NM_014572.2	918	cCc/cTc																																																																														
FLT1	0	MSKCC	GRCh37	13	28877393	28877393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	434	376	0	ENST00000282397.4:c.3928G>A	p.Asp1310Asn	p.D1310N	ENST00000282397	NM_002019.4	1310	Gac/Aac																																																																														
ALK	0	MSKCC	GRCh37	2	29519887	29519887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	304	487	1	ENST00000389048.3:c.1684G>A	p.Gly562Arg	p.G562R	ENST00000389048	NM_004304.4	562	Gga/Aga																																																																														
ALK	0	MSKCC	GRCh37	2	29606709	29606709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	337	434	0	ENST00000389048.3:c.1171G>A	p.Gly391Arg	p.G391R	ENST00000389048	NM_004304.4	391	Gga/Aga																																																																														
PPARG	0	MSKCC	GRCh37	3	12458579	12458579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	374	538	0	ENST00000287820.6:c.1196C>T	p.Ala399Val	p.A399V	ENST00000287820	NM_015869.4	399	gCt/gTt																																																																														
ROS1	0	MSKCC	GRCh37	6	117706940	117706940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	440	530	1	ENST00000368508.3:c.2210C>T	p.Ser737Leu	p.S737L	ENST00000368508	NM_002944.2	737	tCa/tTa																																																																														
CARD11	0	MSKCC	GRCh37	7	2946462	2946462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	269	408	0	ENST00000396946.4:c.3275G>A	p.Arg1092Gln	p.R1092Q	ENST00000396946	NM_032415.4	1092	cGa/cAa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50358661	50358661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	163	278	1	ENST00000331340.3:c.4G>A	p.Asp2Asn	p.D2N	ENST00000331340	NM_006060.4	2	Gat/Aat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465627	8465627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	315	523	1	ENST00000356435.5:c.3553G>A	p.Glu1185Lys	p.E1185K	ENST00000356435		1185	Gaa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486035	8486035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	294	383	0	ENST00000356435.5:c.2782G>A	p.Glu928Lys	p.E928K	ENST00000356435		928	Gaa/Aaa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390915	89390917	+	stop_gained	Nonsense_Mutation	ONP	TTC	TTC	CTA			P-0016327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	239	420	0	ENST00000336596.2:c.981_983delTTCinsCTA	p.Ser328Ter	p.S328*	ENST00000336596	NM_005233.5	327	tcTTCa/tcCTAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	825	433	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	527	608	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
NBN	0	MSKCC	GRCh37	8	90993645	90993645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs12721593		P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	332	551	1	ENST00000265433.3:c.278C>T	p.Ser93Leu	p.S93L	ENST00000265433	NM_002485.4	93	tCg/tTg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123244913	123244913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	243	614	2	ENST00000358487.5:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000358487	NM_000141.4	731	Gaa/Aaa																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64135659	64135659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	263	500	1	ENST00000334205.4:c.1127C>T	p.Thr376Ile	p.T376I	ENST00000334205	NM_003942.2	376	aCc/aTc																																																																														
PAK1	0	MSKCC	GRCh37	11	77047298	77047298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	187	425	1	ENST00000356341.3:c.1246C>T	p.Pro416Ser	p.P416S	ENST00000356341	NM_002576.4	416	Cca/Tca																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375890	118375890	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	238	516	0	ENST00000534358.1:c.9283C>T	p.Gln3095Ter	p.Q3095*	ENST00000534358	NM_005933.3	3095	Caa/Taa																																																																														
SPOP	0	MSKCC	GRCh37	17	47699372	47699372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	287	557	2	ENST00000347630.2:c.136G>A	p.Glu46Lys	p.E46K	ENST00000347630	NM_001007230.1	46	Gag/Aag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36219978	36219978	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	153	444	1	ENST00000222270.7:c.4779+1G>T		p.X1593_splice	ENST00000222270	NM_014727.1	1593																																																																															
REL	0	MSKCC	GRCh37	2	61121601	61121601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	274	667	1	ENST00000295025.8:c.223C>T	p.His75Tyr	p.H75Y	ENST00000295025	NM_002908.2	75	Cat/Tat																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67575439	67575439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	138	295	0	ENST00000274335.5:c.512C>T	p.Ser171Phe	p.S171F	ENST00000274335		171	tCc/tTc																																																																														
MDC1	0	MSKCC	GRCh37	6	30671296	30671296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	142	338	0	ENST00000376406.3:c.5581C>T	p.Pro1861Ser	p.P1861S	ENST00000376406	NM_014641.2	1861	Cca/Tca																																																																														
HGF	0	MSKCC	GRCh37	7	81350157	81350157	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	346	389	0	ENST00000222390.5:c.1175A>T	p.Tyr392Phe	p.Y392F	ENST00000222390	NM_000601.4	392	tAt/tTt																																																																														
PREX2	0	MSKCC	GRCh37	8	68950461	68950461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	260	503	0	ENST00000288368.4:c.773G>A	p.Gly258Glu	p.G258E	ENST00000288368	NM_024870.2	258	gGa/gAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8492925	8492925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	204	492	0	ENST00000356435.5:c.2404G>A	p.Ala802Thr	p.A802T	ENST00000356435		802	Gcc/Acc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	245	465	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	107	301	0				ENST00000310581	NM_198253.2																																																																																
TSC2	0	MSKCC	GRCh37	16	2110689	2110689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	328	446	1	ENST00000219476.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000219476	NM_000548.3	332	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0016335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	133	369	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
CDH1	0	MSKCC	GRCh37	16	68771319	68771319	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0016335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	49	152	0	ENST00000261769.5:c.1A>G	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	Atg/Gtg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16021255	16021259	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TAAAA	TAAAA	-			P-0016335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	98	262	0	ENST00000268712.3:c.1998_2002delTTTTA	p.Tyr666Ter	p.Y666*	ENST00000268712	NM_006311.3	666	taTTTTAac/taac																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	135	661	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89720828	89720828	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	96	298	0	ENST00000371953.3:c.979A>T	p.Lys327Ter	p.K327*	ENST00000371953	NM_000314.4	327	Aaa/Taa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589656	67589670	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCCCAGGTGAGTTT	ATCCCAGGTGAGTTT	-			P-0016337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	89	412	0	ENST00000274335.5:c.1419_1425+8delATCCCAGGTGAGTTT		p.X473_splice	ENST00000274335		473																																																																															
KMT2C	0	MSKCC	GRCh37	7	151882717	151882717	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	25	247	0	ENST00000262189.6:c.5009-1G>A		p.X1670_splice	ENST00000262189	NM_170606.2	1670																																																																															
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0016338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	229	450	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	451	658	0	ENST00000269305.4:c.857A>T	p.Glu286Val	p.E286V	ENST00000269305	NM_001126112.2	286	gAa/gTa																																																																														
APC	0	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	229	340	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727429	66727429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	283	399	1	ENST00000307102.5:c.145C>T	p.Arg49Cys	p.R49C	ENST00000307102	NM_002755.3	49	Cgc/Tgc																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22006090	22006090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	272	417	1	ENST00000276925.6:c.313C>T	p.Arg105Trp	p.R105W	ENST00000276925	NM_004936.3	105	Cgg/Tgg																																																																														
FLT4	0	MSKCC	GRCh37	5	180047957	180047957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	97	459	1	ENST00000261937.6:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000261937	NM_182925.4	740	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	126	376	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	75	333	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106078	27106078	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	175	467	0	ENST00000324856.7:c.5693delC	p.Pro1898HisfsTer25	p.P1898Hfs*25	ENST00000324856	NM_006015.4	1897	Ccc/cc																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	210	374	2	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	50	424	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
AR	0	MSKCC	GRCh37	X	66766105	66766105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	114	524	1	ENST00000374690.3:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000374690	NM_000044.3	373	Gga/Aga																																																																														
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	180	550	4	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	84	173	2	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
ACVR1	0	MSKCC	GRCh37	2	158617589	158617589	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	42	326	0	ENST00000263640.3:c.1067G>A	p.Gly356Asp	p.G356D	ENST00000263640	NM_001105.4	356	gGc/gAc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	61	537	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9777676	9777676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	209	428	0	ENST00000377346.4:c.1012C>T	p.Arg338Trp	p.R338W	ENST00000377346	NM_005026.3	338	Cgg/Tgg																																																																														
ACVR1	0	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	68	428	3	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																																																														
MTOR	0	MSKCC	GRCh37	1	11186804	11186804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	59	428	0	ENST00000361445.4:c.6401G>A	p.Arg2134Gln	p.R2134Q	ENST00000361445	NM_004958.3	2134	cGg/cAg																																																																														
MUTYH	0	MSKCC	GRCh37	1	45797114	45797114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	81	539	0	ENST00000372115.3:c.1259C>A	p.Thr420Lys	p.T420K	ENST00000372115	NM_001048171.1	420	aCg/aAg																																																																														
ELF3	0	MSKCC	GRCh37	1	201982311	201982311	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1343	249	596	0	ENST00000359651.3:c.690T>A	p.Asp230Glu	p.D230E	ENST00000359651		230	gaT/gaA																																																																														
PTEN	0	MSKCC	GRCh37	10	89692769	89692769	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	160	479	0	ENST00000371953.3:c.254-1G>T		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
PTEN	0	MSKCC	GRCh37	10	89692983	89692983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	54	441	0	ENST00000371953.3:c.467G>T	p.Gly156Val	p.G156V	ENST00000371953	NM_000314.4	156	gGg/gTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89717712	89717712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	24	501	1	ENST00000371953.3:c.737C>T	p.Pro246Leu	p.P246L	ENST00000371953	NM_000314.4	246	cCg/cTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118353205	118353205	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	156	313	0	ENST00000534358.1:c.4081G>T	p.Glu1361Ter	p.E1361*	ENST00000534358	NM_005933.3	1361	Gaa/Taa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426022	49426022	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	48	473	3	ENST00000301067.7:c.12466delC	p.Gln4156AsnfsTer5	p.Q4156Nfs*5	ENST00000301067	NM_003482.3	4156	Caa/aa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432244	49432245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	79	644	0	ENST00000301067.7:c.8894dup	p.Asn2965LysfsTer8	p.N2965Kfs*8	ENST00000301067	NM_003482.3	2965	aac/aaAc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347553	89347553	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	201	434	0	ENST00000301030.4:c.5397delC	p.Glu1800ArgfsTer163	p.E1800Rfs*163	ENST00000301030	NM_001256183.1	1799	ccC/cc																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7976593	7976593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	200	474	1	ENST00000319144.4:c.1799G>A	p.Arg600Gln	p.R600Q	ENST00000319144	NM_001139.2	600	cGg/cAg																																																																														
NF1	0	MSKCC	GRCh37	17	29686022	29686022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	40	340	0	ENST00000358273.4:c.8149C>T	p.Pro2717Ser	p.P2717S	ENST00000358273	NM_001042492.2	2717	Ccg/Tcg																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792837	33792848	+	inframe_deletion	In_Frame_Del	DEL	GCTTGATCACCA	GCTTGATCACCA	-			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	66	222	1	ENST00000498907.2:c.473_484delTGGTGATCAAGC	p.Leu158_Lys161del	p.L158_K161del	ENST00000498907	NM_004364.3	158	cTGGTGATCAAGCag/cag																																																																														
INPP4A	0	MSKCC	GRCh37	2	99175934	99175934	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	212	479	0	ENST00000074304.5:c.1850delC	p.Pro617LeufsTer18	p.P617Lfs*18	ENST00000074304	NM_001134224.1	616	Ccc/cc																																																																														
ATR	0	MSKCC	GRCh37	3	142238625	142238625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	92	306	0	ENST00000350721.4:c.4268A>G	p.Glu1423Gly	p.E1423G	ENST00000350721	NM_001184.3	1423	gAg/gGg																																																																														
FAT1	0	MSKCC	GRCh37	4	187509927	187509927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	44	266	1	ENST00000441802.2:c.13586C>T	p.Ala4529Val	p.A4529V	ENST00000441802	NM_005245.3	4529	gCg/gTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187534385	187534385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	66	405	1	ENST00000441802.2:c.9341C>T	p.Thr3114Met	p.T3114M	ENST00000441802	NM_005245.3	3114	aCg/aTg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56183343	56183343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	33	340	0	ENST00000399503.3:c.4253C>A	p.Pro1418His	p.P1418H	ENST00000399503	NM_005921.1	1418	cCt/cAt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67522664	67522664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	142	319	0	ENST00000274335.5:c.161G>T	p.Gly54Val	p.G54V	ENST00000274335		54	gGc/gTc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589155	67589156	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAATA			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	81	340	0	ENST00000274335.5:c.1144_1149dup	p.Lys382_Ile383dup	p.K382_I383dup	ENST00000274335		382	-/AAAATA																																																																														
ARID1B	0	MSKCC	GRCh37	6	157469956	157469956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	172	403	1	ENST00000346085.5:c.2754delC	p.Ser919ValfsTer20	p.S919Vfs*20	ENST00000346085	NM_020732.3	917	aCc/ac																																																																														
ARID1B	0	MSKCC	GRCh37	6	157517346	157517346	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	65	490	0	ENST00000346085.5:c.3910A>C	p.Ser1304Arg	p.S1304R	ENST00000346085	NM_020732.3	1304	Agc/Cgc																																																																														
ATRX	0	MSKCC	GRCh37	X	76938677	76938678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	94	542	0	ENST00000373344.5:c.2070dup	p.Leu691ThrfsTer10	p.L691Tfs*10	ENST00000373344	NM_000489.3	690	-/A																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0016342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	174	402	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50483668	50483668	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0016342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	94	201	0	ENST00000394963.4:c.774del	p.Trp258CysfsTer15	p.W258Cfs*15	ENST00000394963	NM_003076.4	258	tGg/tg																																																																														
NSD1	0	MSKCC	GRCh37	5	176694649	176694657	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAATGAC	TGCAATGAC	GCAATGA			P-0016342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	174	479	2	ENST00000439151.2:c.5233_5241delinsGCAATGA	p.Cys1745AlafsTer4	p.C1745Afs*4	ENST00000439151	NM_022455.4	1745	TGCAATGAC/GCAATGA																																																																														
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	453	401	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274018	10274018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	193	588	0	ENST00000330684.3:c.251C>T	p.Thr84Met	p.T84M	ENST00000330684	NM_001134407.1	84	aCg/aTg																																																																														
CDC42	0	MSKCC	GRCh37	1	22413312	22413312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	89	162	0	ENST00000344548.3:c.439C>T	p.Arg147Cys	p.R147C	ENST00000344548	NM_001039802.1	147	Cgt/Tgt																																																																														
WT1	0	MSKCC	GRCh37	11	32456341	32456341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	212	586	0	ENST00000332351.3:c.551C>T	p.Pro184Leu	p.P184L	ENST00000332351	NM_024426.4	184	cCg/cTg																																																																														
RB1	0	MSKCC	GRCh37	13	49033834	49033934	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCTATCTCCGGCTAAATACACTTTGTGAACGCCTTCTGTCTGAGCACCCAGAATTAGAACATATCATCTGGACCCTTTTCCAGCACACCCTGCAGAATG	AGCCTATCTCCGGCTAAATACACTTTGTGAACGCCTTCTGTCTGAGCACCCAGAATTAGAACATATCATCTGGACCCTTTTCCAGCACACCCTGCAGAATG	-			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	261	359	0	ENST00000267163.4:c.1973_2073delCCTATCTCCGGCTAAATACACTTTGTGAACGCCTTCTGTCTGAGCACCCAGAATTAGAACATATCATCTGGACCCTTTTCCAGCACACCCTGCAGAATGAG	p.Ala658ValfsTer2	p.A658Vfs*2	ENST00000267163	NM_000321.2	657	ctAGCCTATCTCCGGCTAAATACACTTTGTGAACGCCTTCTGTCTGAGCACCCAGAATTAGAACATATCATCTGGACCCTTTTCCAGCACACCCTGCAGAATGag/ctag																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469088	25469093	+	inframe_deletion	In_Frame_Del	DEL	GGCTTT	GGCTTT	-			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	252	513	0	ENST00000264709.3:c.1365_1370delAAAGCC	p.Lys455_Pro457delinsAsn	p.K455_P457delinsN	ENST00000264709	NM_175629.2	455	aaAAAGCCc/aac																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251578	212251578	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	324	318	0	ENST00000342788.4:c.3481G>A	p.Glu1161Lys	p.E1161K	ENST00000342788	NM_005235.2	1161	Gaa/Aaa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467559	66467559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	196	389	0	ENST00000273854.3:c.710T>C	p.Val237Ala	p.V237A	ENST00000273854	NM_004439.5	237	gTa/gCa																																																																														
RXRA	0	MSKCC	GRCh37	9	137328347	137328347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	279	590	1	ENST00000481739.1:c.1276C>T	p.Arg426Cys	p.R426C	ENST00000481739	NM_002957.4	426	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	102	892	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	72	655	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0016348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	117	603	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692887	89692887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	53	491	0	ENST00000371953.3:c.371G>A	p.Cys124Tyr	p.C124Y	ENST00000371953	NM_000314.4	124	tGt/tAt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716212	52716212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	78	513	0	ENST00000322088.6:c.656C>T	p.Ser219Leu	p.S219L	ENST00000322088	NM_014225.5	219	tCg/tTg																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20159746	20159746	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	58	602	0	ENST00000379607.5:c.13A>G	p.Lys5Glu	p.K5E	ENST00000379607	NM_001412.3	5	Aaa/Gaa																																																																														
ATM	0	MSKCC	GRCh37	11	108150330	108150330	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	67	446	1	ENST00000278616.4:c.3397G>T	p.Glu1133Ter	p.E1133*	ENST00000278616	NM_000051.3	1133	Gaa/Taa																																																																														
LATS2	0	MSKCC	GRCh37	13	21563080	21563080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	94	878	0	ENST00000382592.4:c.839C>T	p.Pro280Leu	p.P280L	ENST00000382592	NM_014572.2	280	cCg/cTg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589147	67589147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	128	465	0	ENST00000274335.5:c.1135A>G	p.Lys379Glu	p.K379E	ENST00000274335		379	Aaa/Gaa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178097266	178097266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	280	714	1	ENST00000397062.3:c.448C>T	p.His150Tyr	p.H150Y	ENST00000397062	NM_006164.4	150	Cac/Tac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720803	89720804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	51	328	0	ENST00000371953.3:c.955dup	p.Thr319AsnfsTer6	p.T319Nfs*6	ENST00000371953	NM_000314.4	318	-/A																																																																														
AGO2	0	MSKCC	GRCh37	8	141569588	141569588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	260	757	1	ENST00000220592.5:c.696G>T	p.Glu232Asp	p.E232D	ENST00000220592	NM_012154.3	232	gaG/gaT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	104	593	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	181	872	2	ENST00000269305.4:c.402T>A	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttA																																																																														
ATR	0	MSKCC	GRCh37	3	142215252	142215252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	77	549	0	ENST00000350721.4:c.5849C>T	p.Ser1950Leu	p.S1950L	ENST00000350721	NM_001184.3	1950	tCa/tTa																																																																														
ESR1	0	MSKCC	GRCh37	6	152382150	152382150	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	74	382	0	ENST00000206249.3:c.1260del	p.Met421TrpfsTer17	p.M421Wfs*17	ENST00000206249	NM_000125.3	420	ggC/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	40	815	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	53	619	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27840006	27840006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	48	356	0	ENST00000328488.2:c.88G>A	p.Ala30Thr	p.A30T	ENST00000328488	NM_003533.2	30	Gct/Act																																																																														
KMT2C	0	MSKCC	GRCh37	7	151856016	151856016	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	160	798	0	ENST00000262189.6:c.11602del	p.Arg3868GlyfsTer21	p.R3868Gfs*21	ENST00000262189	NM_170606.2	3868	Agg/gg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	48	562	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155700	56155701	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0016358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	73	603	0	ENST00000399503.3:c.793_794del	p.Glu265IlefsTer35	p.E265Ifs*35	ENST00000399503	NM_005921.1	264	tcAGaa/tcaa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160538	56160577	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAATAAAAAAAAATGTTGTGAAGTTTCAGAGTGGCAGAAT	TAATAAAAAAAAATGTTGTGAAGTTTCAGAGTGGCAGAAT	-			P-0016358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	27	314	0	ENST00000399503.3:c.835-23_851del		p.X279_splice	ENST00000399503	NM_005921.1	279																																																																															
KMT2C	0	MSKCC	GRCh37	7	151836323	151836323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	62	613	0	ENST00000262189.6:c.14482del	p.Arg4828AlafsTer7	p.R4828Afs*7	ENST00000262189	NM_170606.2	4828	Cgc/gc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	56	364	0				ENST00000310581	NM_198253.2																																																																																
MED12	0	MSKCC	GRCh37	X	70339624	70339624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	12	355	0	ENST00000374080.3:c.293A>G	p.Gln98Arg	p.Q98R	ENST00000374080		98	cAg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	335	501	1	ENST00000269305.4:c.712T>C	p.Cys238Arg	p.C238R	ENST00000269305	NM_001126112.2	238	Tgt/Cgt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589580	67589606	+	inframe_deletion	In_Frame_Del	DEL	AATTACATGAATATAACACTCAGTTTC	AATTACATGAATATAACACTCAGTTTC	-			P-0016364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	324	434	0	ENST00000274335.5:c.1345_1371delTTACATGAATATAACACTCAGTTTCAA	p.Leu449_Gln457del	p.L449_Q457del	ENST00000274335		448	aAATTACATGAATATAACACTCAGTTTCaa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	764	628	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	366	483	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	143	354	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	711	739	2	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16068427	16068427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	11	107	0	ENST00000268712.3:c.484G>T	p.Gly162Trp	p.G162W	ENST00000268712	NM_006311.3	162	Ggg/Tgg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87338624	87338624	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	157	446	1	ENST00000277120.3:c.720G>T	p.Met240Ile	p.M240I	ENST00000277120		240	atG/atT																																																																														
STK11	0	MSKCC	GRCh37	19	1221340	1221340	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	441	488	1	ENST00000326873.7:c.862+1G>C		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11096864	11096864	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	578	789	0	ENST00000344626.4:c.356-1G>T		p.X119_splice	ENST00000344626	NM_003072.3	119																																																																															
INPP4B	0	MSKCC	GRCh37	4	143003199	143003199	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	372	489	0	ENST00000262992.4:c.2627T>A	p.Leu876Gln	p.L876Q	ENST00000262992	NM_001101669.1	876	cTg/cAg																																																																														
MTOR	0	MSKCC	GRCh37	1	11189795	11189795	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	143	337	0	ENST00000361445.4:c.5714G>A	p.Arg1905Lys	p.R1905K	ENST00000361445	NM_004958.3	1905	aGa/aAa																																																																														
SPEN	0	MSKCC	GRCh37	1	16245421	16245421	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	115	346	0	ENST00000375759.3:c.1396G>T	p.Asp466Tyr	p.D466Y	ENST00000375759	NM_015001.2	466	Gat/Tat																																																																														
CSF3R	0	MSKCC	GRCh37	1	36933472	36933472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	436	571	0	ENST00000361632.4:c.1815G>T	p.Gln605His	p.Q605H	ENST00000361632		605	caG/caT																																																																														
IKBKE	0	MSKCC	GRCh37	1	206652423	206652424	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	198	581	0	ENST00000367120.3:c.1135dup	p.Leu379ProfsTer10	p.L379Pfs*10	ENST00000367120	NM_014002.3	377	agc/agCc																																																																														
PARP1	0	MSKCC	GRCh37	1	226551695	226551695	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	557	596	0	ENST00000366794.5:c.2735A>C	p.Gln912Pro	p.Q912P	ENST00000366794	NM_001618.3	912	cAg/cCg																																																																														
PARP1	0	MSKCC	GRCh37	1	226552753	226552753	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	460	451	0	ENST00000366794.5:c.2608G>C	p.Ala870Pro	p.A870P	ENST00000366794	NM_001618.3	870	Gct/Cct																																																																														
TET1	0	MSKCC	GRCh37	10	70332609	70332609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	280	638	1	ENST00000373644.4:c.514C>A	p.Leu172Ile	p.L172I	ENST00000373644	NM_030625.2	172	Cta/Ata																																																																														
TET1	0	MSKCC	GRCh37	10	70405200	70405200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	442	684	0	ENST00000373644.4:c.2714C>T	p.Ser905Leu	p.S905L	ENST00000373644	NM_030625.2	905	tCa/tTa																																																																														
TET1	0	MSKCC	GRCh37	10	70450967	70450967	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	239	622	0	ENST00000373644.4:c.5807C>G	p.Pro1936Arg	p.P1936R	ENST00000373644	NM_030625.2	1936	cCt/cGt																																																																														
FGF3	0	MSKCC	GRCh37	11	69633552	69633552	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	323	291	1	ENST00000334134.2:c.150C>A	p.Cys50Ter	p.C50*	ENST00000334134	NM_005247.2	50	tgC/tgA																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948306	71948306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	610	794	0	ENST00000298229.2:c.3018G>T	p.Arg1006Ser	p.R1006S	ENST00000298229	NM_001567.3	1006	agG/agT																																																																														
EED	0	MSKCC	GRCh37	11	85956305	85956305	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	109	251	0	ENST00000263360.6:c.34G>T	p.Gly12Ter	p.G12*	ENST00000263360	NM_003797.3	12	Gga/Tga																																																																														
PGR	0	MSKCC	GRCh37	11	100998256	100998256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	413	219	0	ENST00000325455.5:c.1546G>T	p.Gly516Cys	p.G516C	ENST00000325455	NM_001202474.3	516	Ggc/Tgc																																																																														
ATM	0	MSKCC	GRCh37	11	108106396	108106396	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	300	237	0	ENST00000278616.4:c.332-1G>T		p.X111_splice	ENST00000278616	NM_000051.3	111																																																																															
ATM	0	MSKCC	GRCh37	11	108190784	108190784	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	151	387	0	ENST00000278616.4:c.6451A>T	p.Arg2151Ter	p.R2151*	ENST00000278616	NM_000051.3	2151	Aga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435986	49435986	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	380	544	0	ENST00000301067.7:c.5995A>G	p.Asn1999Asp	p.N1999D	ENST00000301067	NM_003482.3	1999	Aac/Gac																																																																														
TBX3	0	MSKCC	GRCh37	12	115112197	115112197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	313	437	0	ENST00000257566.3:c.1543G>T	p.Gly515Trp	p.G515W	ENST00000257566	NM_016569.3	515	Ggg/Tgg																																																																														
POLE	0	MSKCC	GRCh37	12	133215877	133215877	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	200	262	0	ENST00000320574.5:c.5386A>G	p.Lys1796Glu	p.K1796E	ENST00000320574	NM_006231.2	1796	Aag/Gag																																																																														
FLT3	0	MSKCC	GRCh37	13	28592634	28592634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	219	656	0	ENST00000241453.7:c.2511G>T	p.Met837Ile	p.M837I	ENST00000241453	NM_004119.2	837	atG/atT																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	131	309	0	ENST00000355739.4:c.1537G>C	p.Ala513Pro	p.A513P	ENST00000355739	NM_000123.3	513	Gca/Cca																																																																														
IRS2	0	MSKCC	GRCh37	13	110435972	110435972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	553	692	0	ENST00000375856.3:c.2429A>G	p.Tyr810Cys	p.Y810C	ENST00000375856	NM_003749.2	810	tAc/tGc																																																																														
IRS2	0	MSKCC	GRCh37	13	110437019	110437019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	40	75	0	ENST00000375856.3:c.1382C>G	p.Pro461Arg	p.P461R	ENST00000375856	NM_003749.2	461	cCg/cGg																																																																														
DICER1	0	MSKCC	GRCh37	14	95557641	95557641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	521	735	2	ENST00000343455.3:c.5426G>T	p.Gly1809Val	p.G1809V	ENST00000343455	NM_177438.2	1809	gGg/gTg																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643430	38643434	+	frameshift_variant	Frame_Shift_Del	DEL	TAAGT	TAAGT	-			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	252	655	0	ENST00000299084.4:c.906_910del	p.Leu302PhefsTer9	p.L302Ffs*9	ENST00000299084	NM_152594.2	300	acTAAGTta/acta																																																																														
SLX4	0	MSKCC	GRCh37	16	3632578	3632578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	210	720	0	ENST00000294008.3:c.5270G>A	p.Arg1757Lys	p.R1757K	ENST00000294008	NM_032444.2	1757	aGg/aAg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857424	9857424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	171	450	0	ENST00000330684.3:c.3977G>A	p.Gly1326Asp	p.G1326D	ENST00000330684	NM_001134407.1	1326	gGc/gAc																																																																														
SOCS1	0	MSKCC	GRCh37	16	11349055	11349055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	158	366	0	ENST00000332029.2:c.281G>C	p.Arg94Pro	p.R94P	ENST00000332029	NM_003745.1	94	cGc/cCc																																																																														
MAPK3	0	MSKCC	GRCh37	16	30134479	30134479	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	214	435	2	ENST00000263025.4:c.52G>T	p.Glu18Ter	p.E18*	ENST00000263025	NM_002746.2	18	Gag/Tag																																																																														
CYLD	0	MSKCC	GRCh37	16	50810107	50810107	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	145	558	0	ENST00000398568.2:c.931A>T	p.Arg311Trp	p.R311W	ENST00000398568	NM_001042412.1	311	Agg/Tgg																																																																														
CYLD	0	MSKCC	GRCh37	16	50810140	50810140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	444	667	0	ENST00000398568.2:c.964G>T	p.Gly322Cys	p.G322C	ENST00000398568	NM_001042412.1	322	Ggt/Tgt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72984642	72984642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	233	660	0	ENST00000268489.5:c.2942G>T	p.Gly981Val	p.G981V	ENST00000268489	NM_006885.3	981	gGg/gTg																																																																														
CDK12	0	MSKCC	GRCh37	17	37667841	37667841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	448	573	2	ENST00000447079.4:c.2726G>T	p.Gly909Val	p.G909V	ENST00000447079	NM_015083.1	909	gGa/gTa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868590	37868590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	181	434	1	ENST00000269571.5:c.1037G>T	p.Gly346Val	p.G346V	ENST00000269571		346	gGc/gTc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41226531	41226531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	322	486	0	ENST00000357654.3:c.4492C>T	p.Pro1498Ser	p.P1498S	ENST00000357654	NM_007294.3	1498	Cct/Tct																																																																														
GNA11	0	MSKCC	GRCh37	19	3110161	3110161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	354	438	1	ENST00000078429.4:c.151G>T	p.Gly51Trp	p.G51W	ENST00000078429	NM_002067.2	51	Ggg/Tgg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11172484	11172484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	553	556	0	ENST00000344626.4:c.4936G>A	p.Glu1646Lys	p.E1646K	ENST00000344626	NM_003072.3	1646	Gaa/Aaa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281190	15281190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	566	719	0	ENST00000263388.2:c.5066G>T	p.Gly1689Val	p.G1689V	ENST00000263388	NM_000435.2	1689	gGt/gTt																																																																														
BRD4	0	MSKCC	GRCh37	19	15349664	15349664	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	179	526	0	ENST00000263377.2:c.3910G>T	p.Val1304Leu	p.V1304L	ENST00000263377	NM_058243.2	1304	Gtg/Ttg																																																																														
POLD1	0	MSKCC	GRCh37	19	50902217	50902217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	539	658	0	ENST00000440232.2:c.109G>T	p.Asp37Tyr	p.D37Y	ENST00000440232	NM_002691.3	37	Gac/Tac																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716208	52716208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	163	442	0	ENST00000322088.6:c.652G>T	p.Asp218Tyr	p.D218Y	ENST00000322088	NM_014225.5	218	Gac/Tac																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467169	25467169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	207	510	0	ENST00000264709.3:c.1706C>G	p.Pro569Arg	p.P569R	ENST00000264709	NM_175629.2	569	cCg/cGg																																																																														
ALK	0	MSKCC	GRCh37	2	29430103	29430103	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	425	562	0	ENST00000389048.3:c.3872T>A	p.Leu1291Gln	p.L1291Q	ENST00000389048	NM_004304.4	1291	cTg/cAg																																																																														
MSH6	0	MSKCC	GRCh37	2	48010438	48010438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	252	532	0	ENST00000234420.5:c.66G>T	p.Lys22Asn	p.K22N	ENST00000234420	NM_000179.2	22	aaG/aaT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248497	212248497	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	485	379	0	ENST00000342788.4:c.3770A>T	p.Asp1257Val	p.D1257V	ENST00000342788	NM_005235.2	1257	gAc/gTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41514462	41514462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	546	528	0	ENST00000373198.4:c.199C>G	p.Gln67Glu	p.Q67E	ENST00000373198	NM_133170.3	67	Cag/Gag																																																																														
PPARG	0	MSKCC	GRCh37	3	12458266	12458266	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	507	615	2	ENST00000287820.6:c.883A>T	p.Ile295Phe	p.I295F	ENST00000287820	NM_015869.4	295	Atc/Ttc																																																																														
SHQ1	0	MSKCC	GRCh37	3	72881562	72881562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	409	421	0	ENST00000325599.8:c.557G>C	p.Arg186Pro	p.R186P	ENST00000325599	NM_018130.2	186	cGc/cCc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259500	89259500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	182	458	0	ENST00000336596.2:c.644C>A	p.Thr215Lys	p.T215K	ENST00000336596	NM_005233.5	215	aCg/aAg																																																																														
ATR	0	MSKCC	GRCh37	3	142218552	142218552	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	196	525	0	ENST00000350721.4:c.5297G>A	p.Trp1766Ter	p.W1766*	ENST00000350721	NM_001184.3	1766	tGg/tAg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1961433	1961433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	245	575	1	ENST00000382891.5:c.3221G>T	p.Gly1074Val	p.G1074V	ENST00000382891	NM_133335.3	1074	gGg/gTg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55129934	55129934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	257	625	0	ENST00000257290.5:c.468G>T	p.Glu156Asp	p.E156D	ENST00000257290	NM_006206.4	156	gaG/gaT																																																																														
INPP4B	0	MSKCC	GRCh37	4	143129682	143129682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	322	436	0	ENST00000262992.4:c.968G>A	p.Gly323Glu	p.G323E	ENST00000262992	NM_001101669.1	323	gGg/gAg																																																																														
FAT1	0	MSKCC	GRCh37	4	187541321	187541321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	311	425	0	ENST00000441802.2:c.6419A>C	p.Gln2140Pro	p.Q2140P	ENST00000441802	NM_005245.3	2140	cAa/cCa																																																																														
RASA1	0	MSKCC	GRCh37	5	86659229	86659229	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	341	436	0	ENST00000274376.6:c.1518T>G	p.Tyr506Ter	p.Y506*	ENST00000274376	NM_002890.2	506	taT/taG																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031947	26031947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	139	342	0	ENST00000244661.2:c.342T>A	p.His114Gln	p.H114Q	ENST00000244661	NM_003537.3	114	caT/caA																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032071	26032071	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	133	325	0	ENST00000244661.2:c.218G>C	p.Arg73Pro	p.R73P	ENST00000244661	NM_003537.3	73	cGa/cCa																																																																														
MDC1	0	MSKCC	GRCh37	6	30679762	30679762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	183	510	0	ENST00000376406.3:c.1957G>T	p.Asp653Tyr	p.D653Y	ENST00000376406	NM_014641.2	653	Gac/Tac																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120786	94120786	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	481	560	0	ENST00000369303.4:c.265T>A	p.Trp89Arg	p.W89R	ENST00000369303	NM_004440.3	89	Tgg/Agg																																																																														
FYN	0	MSKCC	GRCh37	6	112015880	112015880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	504	625	0	ENST00000368678.4:c.1061G>T	p.Gly354Val	p.G354V	ENST00000368678		354	gGa/gTa																																																																														
ROS1	0	MSKCC	GRCh37	6	117650564	117650564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	519	736	0	ENST00000368508.3:c.5294G>T	p.Ser1765Ile	p.S1765I	ENST00000368508	NM_002944.2	1765	aGt/aTt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522167	157522167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	462	487	0	ENST00000346085.5:c.4439G>A	p.Gly1480Asp	p.G1480D	ENST00000346085	NM_020732.3	1480	gGc/gAc																																																																														
HGF	0	MSKCC	GRCh37	7	81346550	81346550	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	252	365	0	ENST00000222390.5:c.1403G>T	p.Arg468Leu	p.R468L	ENST00000222390	NM_000601.4	468	cGt/cTt																																																																														
PREX2	0	MSKCC	GRCh37	8	68942860	68942860	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	241	656	0	ENST00000288368.4:c.672A>T	p.Leu224Phe	p.L224F	ENST00000288368	NM_024870.2	224	ttA/ttT																																																																														
PREX2	0	MSKCC	GRCh37	8	68956825	68956825	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs184081186		P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	363	483	0	ENST00000288368.4:c.943G>A	p.Ala315Thr	p.A315T	ENST00000288368	NM_024870.2	315	Gct/Act																																																																														
PREX2	0	MSKCC	GRCh37	8	68999994	68999994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	445	649	0	ENST00000288368.4:c.2063G>T	p.Gly688Val	p.G688V	ENST00000288368	NM_024870.2	688	gGc/gTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8375935	8375935	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	155	322	0	ENST00000356435.5:c.4661+1G>T		p.X1554_splice	ENST00000356435		1554																																																																															
PTPRD	0	MSKCC	GRCh37	9	8389306	8389306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	776	675	0	ENST00000356435.5:c.4312G>T	p.Asp1438Tyr	p.D1438Y	ENST00000356435		1438	Gac/Tac																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974739	21974739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	235	289	0	ENST00000304494.5:c.88G>T	p.Ala30Ser	p.A30S	ENST00000304494	NM_000077.4	30	Gcg/Tcg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974739	21974739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	235	289	0	ENST00000304494.5:c.88G>T	p.Ala30Ser	p.A30S	ENST00000304494	NM_000077.4	30	Gcg/Tcg																																																																														
TEK	0	MSKCC	GRCh37	9	27158131	27158131	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	161	495	0	ENST00000380036.4:c.355C>G	p.Arg119Gly	p.R119G	ENST00000380036	NM_000459.3	119	Cgt/Ggt																																																																														
NTRK2	0	MSKCC	GRCh37	9	87285691	87285691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	305	411	0	ENST00000277120.3:c.28C>A	p.Pro10Thr	p.P10T	ENST00000277120		10	Ccc/Acc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87342754	87342754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	472	629	0	ENST00000277120.3:c.1039C>A	p.Gln347Lys	p.Q347K	ENST00000277120		347	Cag/Aag																																																																														
PTCH1	0	MSKCC	GRCh37	9	98211371	98211371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	358	530	0	ENST00000331920.6:c.3784C>T	p.Pro1262Ser	p.P1262S	ENST00000331920	NM_000264.3	1262	Ccc/Tcc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101904874	101904874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	183	415	0	ENST00000374994.4:c.862C>G	p.Leu288Val	p.L288V	ENST00000374994	NM_004612.2	288	Ctt/Gtt																																																																														
ABL1	0	MSKCC	GRCh37	9	133759791	133759791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	324	406	1	ENST00000318560.5:c.2114G>T	p.Gly705Val	p.G705V	ENST00000318560	NM_005157.4	705	gGc/gTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391520	139391520	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	508	696	0	ENST00000277541.6:c.6671A>T	p.Gln2224Leu	p.Q2224L	ENST00000277541	NM_017617.3	2224	cAg/cTg																																																																														
TRAF2	0	MSKCC	GRCh37	9	139814841	139814841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	261	668	0	ENST00000247668.2:c.834G>T	p.Lys278Asn	p.K278N	ENST00000247668	NM_021138.3	278	aaG/aaT																																																																														
BCOR	0	MSKCC	GRCh37	X	39932609	39932609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	506	738	0	ENST00000378444.4:c.1990G>C	p.Glu664Gln	p.E664Q	ENST00000378444	NM_001123385.1	664	Gag/Cag																																																																														
BCOR	0	MSKCC	GRCh37	X	39935723	39935723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	369	502	0	ENST00000378444.4:c.149C>T	p.Pro50Leu	p.P50L	ENST00000378444	NM_001123385.1	50	cCc/cTc																																																																														
AMER1	0	MSKCC	GRCh37	X	63410407	63410407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	381	649	1	ENST00000330258.3:c.2760G>T	p.Glu920Asp	p.E920D	ENST00000330258	NM_152424.3	920	gaG/gaT																																																																														
AMER1	0	MSKCC	GRCh37	X	63411375	63411375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	311	539	0	ENST00000330258.3:c.1792G>C	p.Ala598Pro	p.A598P	ENST00000330258	NM_152424.3	598	Gcc/Ccc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412083	63412083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	556	755	0	ENST00000330258.3:c.1084C>G	p.Leu362Val	p.L362V	ENST00000330258	NM_152424.3	362	Ctg/Gtg																																																																														
AR	0	MSKCC	GRCh37	X	66766279	66766279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	354	465	0	ENST00000374690.3:c.1291G>C	p.Ala431Pro	p.A431P	ENST00000374690	NM_000044.3	431	Gct/Cct																																																																														
AR	0	MSKCC	GRCh37	X	66937446	66937446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	387	536	1	ENST00000374690.3:c.2300C>A	p.Pro767His	p.P767H	ENST00000374690	NM_000044.3	767	cCt/cAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187541316	187541316	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AA			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	289	424	0	ENST00000441802.2:c.6424delinsTT	p.Glu2142LeufsTer3	p.E2142Lfs*3	ENST00000441802	NM_005245.3	2142	Gag/TTag																																																																														
RBM10	0	MSKCC	GRCh37	X	47044977	47044977	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	AC			P-0016365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	516	642	0	ENST00000329236.7:c.2069delinsAC	p.Phe690TyrfsTer22	p.F690Yfs*22	ENST00000329236	NM_001204466.1	690	tTc/tACc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0016366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	487	714	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0016366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	177	384	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	216	457	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5218538	5218538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	330	605	0	ENST00000357368.4:c.3941G>A	p.Arg1314His	p.R1314H	ENST00000357368	NM_002850.3	1314	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175351	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0016367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	142	348	0	ENST00000257430.4:c.4062_4063del	p.Ser1355PhefsTer19	p.S1355Ffs*19	ENST00000257430	NM_000038.5	1354	TTt/t																																																																														
SOX9	0	MSKCC	GRCh37	17	70118944	70118944	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	321	664	0	ENST00000245479.2:c.516C>G	p.Tyr172Ter	p.Y172*	ENST00000245479	NM_000346.3	172	taC/taG																																																																														
PTPRT	0	MSKCC	GRCh37	20	40710553	40710553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	606	578	1	ENST00000373198.4:c.4298G>A	p.Arg1433His	p.R1433H	ENST00000373198	NM_133170.3	1433	cGt/cAt																																																																														
ATRX	0	MSKCC	GRCh37	X	76937569	76937569	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0016367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	174	537	0	ENST00000373344.5:c.3179T>G	p.Leu1060Ter	p.L1060*	ENST00000373344	NM_000489.3	1060	tTa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0016368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	104	618	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
GPS2	0	MSKCC	GRCh37	17	7217656	7217656	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	46	476	0	ENST00000380728.2:c.271A>T	p.Lys91Ter	p.K91*	ENST00000380728		91	Aag/Tag																																																																														
TSC2	0	MSKCC	GRCh37	16	2138264	2138264	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	46	695	0	ENST00000219476.3:c.5197del	p.Thr1733ProfsTer93	p.T1733Pfs*93	ENST00000219476	NM_000548.3	1733	Acc/cc																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0016369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	278	383	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175212	112175212	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	227	265	0	ENST00000257430.4:c.3924del	p.Glu1309LysfsTer12	p.E1309Kfs*12	ENST00000257430	NM_000038.5	1307	atA/at																																																																														
TSC1	0	MSKCC	GRCh37	9	135781005	135781016	+	frameshift_variant	Frame_Shift_Del	DEL	GTATCAGTCTGT	GTATCAGTCTGT	A			P-0016369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	273	435	0	ENST00000298552.3:c.1949_1960delinsT	p.Asp650ValfsTer34	p.D650Vfs*34	ENST00000298552	NM_001162426.1	650	gACAGACTGATACag/gTag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	82	668	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8497259	8497259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	92	565	0	ENST00000356435.5:c.2332G>T	p.Asp778Tyr	p.D778Y	ENST00000356435		778	Gat/Tat																																																																														
LMO1	0	MSKCC	GRCh37	11	8251851	8251851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	31	376	0	ENST00000335790.3:c.226C>A	p.Arg76Ser	p.R76S	ENST00000335790	NM_002315.2	76	Cgc/Agc																																																																														
NUP93	0	MSKCC	GRCh37	16	56857734	56857734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	44	351	0	ENST00000308159.5:c.770A>T	p.Gln257Leu	p.Q257L	ENST00000308159	NM_014669.4	257	cAg/cTg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267496	198267496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	56	455	1	ENST00000335508.6:c.1861G>A	p.Asp621Asn	p.D621N	ENST00000335508	NM_012433.2	621	Gat/Aat																																																																														
RBM10	0	MSKCC	GRCh37	X	47041247	47041247	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	67	766	0	ENST00000329236.7:c.1441G>T	p.Glu481Ter	p.E481*	ENST00000329236	NM_001204466.1	481	Gaa/Taa																																																																														
AR	0	MSKCC	GRCh37	X	66765851	66765851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	52	767	0	ENST00000374690.3:c.863C>A	p.Ala288Asp	p.A288D	ENST00000374690	NM_000044.3	288	gCc/gAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115871	8115872	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0016371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	110	614	0	ENST00000346208.3:c.1219_1220delTC	p.Ser407AlafsTer99	p.S407Afs*99	ENST00000346208		406	aTC/a																																																																														
MEN1	0	MSKCC	GRCh37	11	64575049	64575049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	100	464	0	ENST00000337652.1:c.773C>T	p.Ser258Leu	p.S258L	ENST00000337652	NM_130803.2	258	tCg/tTg																																																																														
NUF2	0	MSKCC	GRCh37	1	163318779	163318779	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116669228		P-0016371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	195	764	2	ENST00000271452.3:c.1169G>A	p.Arg390Gln	p.R390Q	ENST00000271452	NM_145697.2	390	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	94	617	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578523	7578523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	114	741	0	ENST00000269305.4:c.407A>C	p.Gln136Pro	p.Q136P	ENST00000269305	NM_001126112.2	136	cAa/cCa																																																																														
MGA	0	MSKCC	GRCh37	15	42032329	42032331	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0016372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	98	587	0	ENST00000219905.7:c.4518_4520delCTC	p.Ser1507del	p.S1507del	ENST00000219905	NM_001164273.1	1505	TCC/-																																																																														
PMS2	0	MSKCC	GRCh37	7	6037000	6037000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	134	691	0	ENST00000265849.7:c.760G>C	p.Glu254Gln	p.E254Q	ENST00000265849	NM_000535.5	254	Gag/Cag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	117	694	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	86	423	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	368	560	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47039658	47039659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	348	623	0	ENST00000329236.7:c.877dup	p.Thr293AsnfsTer10	p.T293Nfs*10	ENST00000329236	NM_001204466.1	292	-/A																																																																														
SMYD3	0	MSKCC	GRCh37	1	246021826	246021826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	71	498	0	ENST00000388985.4:c.1048T>C	p.Tyr350His	p.Y350H	ENST00000388985		350	Tat/Cat																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376469	118376469	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	265	514	0	ENST00000534358.1:c.9862A>G	p.Ile3288Val	p.I3288V	ENST00000534358	NM_005933.3	3288	Atc/Gtc																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197399	26197399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	20	200	0	ENST00000356476.2:c.80G>A	p.Arg27Gln	p.R27Q	ENST00000356476		27	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0016377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	51	807	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	0	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	32	660	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																														
POLD1	0	MSKCC	GRCh37	19	50910621	50910621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	76	891	3	ENST00000440232.2:c.1724C>T	p.Ser575Leu	p.S575L	ENST00000440232	NM_002691.3	575	tCa/tTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0016378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	102	978	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50480595	50480595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	55	906	0	ENST00000394963.4:c.465G>C	p.Arg155Ser	p.R155S	ENST00000394963	NM_003076.4	155	agG/agC																																																																														
SESN1	0	MSKCC	GRCh37	6	109315722	109315722	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1688	94	1202	0	ENST00000436639.2:c.1063G>T	p.Glu355Ter	p.E355*	ENST00000436639	NM_014454.2	355	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	12	516	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	18	368	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	394	534	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	190	342	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	190	342	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	302	568	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	190	342	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573573	48573573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	70	337	1	ENST00000342988.3:c.157G>T	p.Glu53Ter	p.E53*	ENST00000342988	NM_005359.5	53	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	403	536	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332633	153332634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	214	323	0	ENST00000281708.4:c.322dup	p.Gln108ProfsTer3	p.Q108Pfs*3	ENST00000281708	NM_033632.3	108	caa/cCaa																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137524708	137524708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	48	523	0	ENST00000367739.4:c.661T>G	p.Leu221Val	p.L221V	ENST00000367739	NM_000416.2	221	Tta/Gta																																																																														
BRAF	0	MSKCC	GRCh37	7	140534423	140534423	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	127	323	0	ENST00000288602.6:c.490A>G	p.Lys164Glu	p.K164E	ENST00000288602	NM_004333.4	164	Aaa/Gaa																																																																														
SOX17	0	MSKCC	GRCh37	8	55372230	55372230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	133	345	0	ENST00000297316.4:c.920G>C	p.Gly307Ala	p.G307A	ENST00000297316	NM_022454.3	307	gGc/gCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0016392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	113	524	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
EGFR	0	MSKCC	GRCh37	7	55220275	55220275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	11	610	3	ENST00000275493.2:c.665G>A	p.Arg222His	p.R222H	ENST00000275493	NM_005228.3	222	cGc/cAc																																																																														
TBX3	0	MSKCC	GRCh37	12	115117311	115117311	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0016392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	137	368	0	ENST00000257566.3:c.863A>G	p.Lys288Arg	p.K288R	ENST00000257566	NM_016569.3	288	aAg/aGg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	173	456	0	ENST00000347630.2:c.260A>C	p.Tyr87Ser	p.Y87S	ENST00000347630	NM_001007230.1	87	tAc/tCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0016396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	637	1097	4	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
GPS2	0	MSKCC	GRCh37	17	7217609	7217609	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	242	622	0	ENST00000380728.2:c.317+1G>T		p.X106_splice	ENST00000380728		106																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0016397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	181	931	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7579399	7579400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAGATGACAG			P-0016397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	60	944	0	ENST00000269305.4:c.277_287dup	p.Val97CysfsTer30	p.V97Cfs*30	ENST00000269305	NM_001126112.2	96	tct/tcCTGTCATCTTCt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36206728	36206729	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGGTTAT			P-0016397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	37	687	0	ENST00000300305.3:c.783_784insATAACCCT	p.Gln262IlefsTer52	p.Q262Ifs*52	ENST00000300305		261	-/ATAACCCT																																																																														
MED12	0	MSKCC	GRCh37	X	70340844	70340844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	91	804	0	ENST00000374080.3:c.577T>C	p.Tyr193His	p.Y193H	ENST00000374080		193	Tac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0016398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	59	561	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
NF1	0	MSKCC	GRCh37	17	29556447	29556447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	86	731	0	ENST00000358273.4:c.2814G>C	p.Lys938Asn	p.K938N	ENST00000358273	NM_001042492.2	938	aaG/aaC																																																																														
RIT1	0	MSKCC	GRCh37	1	155880449	155880449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0016400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	220	676	0	ENST00000368323.3:c.104G>C	p.Ser35Thr	p.S35T	ENST00000368323	NM_006912.5	35	aGt/aCt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902873	1902873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	237	1055	0	ENST00000382891.5:c.492G>T	p.Lys164Asn	p.K164N	ENST00000382891	NM_133335.3	164	aaG/aaT																																																																														
BCOR	0	MSKCC	GRCh37	X	39932278	39932278	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	336	716	0	ENST00000378444.4:c.2321A>T	p.Lys774Met	p.K774M	ENST00000378444	NM_001123385.1	774	aAg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	42	542	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	103	945	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	12	940	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
HRAS	0	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	13	902	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591135	67591149	+	inframe_deletion	In_Frame_Del	DEL	GAGAGACCAATACTT	GAGAGACCAATACTT	-			P-0016405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	79	467	0	ENST00000274335.5:c.1730_1744del	p.Arg577_Leu581del	p.R577_L581del	ENST00000274335		576	acGAGAGACCAATACTTg/acg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	1623	590	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15308300	15308317	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGCACTCACAGGCAGG	CAGGCACTCACAGGCAGG	-			P-0016421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	64	567	0	ENST00000263388.2:c.191_197+11del		p.X64_splice	ENST00000263388	NM_000435.2	64																																																																															
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1411	47	587	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	31	572	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1207118	1207118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	53	704	0	ENST00000326873.7:c.206C>A	p.Ser69Ter	p.S69*	ENST00000326873	NM_000455.4	69	tCg/tAg																																																																														
AR	0	MSKCC	GRCh37	X	66766357	66766386	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	12	99	1	ENST00000374690.3:c.1391_1420del	p.Gly464_Gly473del	p.G464_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																														
BLM	0	MSKCC	GRCh37	15	91304375	91304375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	22	551	1	ENST00000355112.3:c.1772G>T	p.Arg591Leu	p.R591L	ENST00000355112	NM_000057.2	591	cGg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577572	7577572	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	47	441	0	ENST00000269305.4:c.709A>G	p.Met237Val	p.M237V	ENST00000269305	NM_001126112.2	237	Atg/Gtg																																																																														
MTOR	0	MSKCC	GRCh37	1	11294268	11294268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	27	462	3	ENST00000361445.4:c.2263C>T	p.Arg755Cys	p.R755C	ENST00000361445	NM_004958.3	755	Cgc/Tgc																																																																														
DIS3	0	MSKCC	GRCh37	13	73352342	73352342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	61	387	1	ENST00000377767.4:c.563G>T	p.Gly188Val	p.G188V	ENST00000377767	NM_014953.3	188	gGa/gTa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30135397	30135397	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	42	353	0	ENST00000331968.5:c.421G>C	p.Asp141His	p.D141H	ENST00000331968	NM_002742.2	141	Gac/Cac																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9984874	9984874	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	46	566	2	ENST00000330684.3:c.1091T>C	p.Ile364Thr	p.I364T	ENST00000330684	NM_001134407.1	364	aTt/aCt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89448544	89448544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	40	460	0	ENST00000336596.2:c.1508C>T	p.Thr503Ile	p.T503I	ENST00000336596	NM_005233.5	503	aCt/aTt																																																																														
NSD1	0	MSKCC	GRCh37	5	176696757	176696757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	33	305	0	ENST00000439151.2:c.5458G>T	p.Val1820Leu	p.V1820L	ENST00000439151	NM_022455.4	1820	Gtg/Ttg																																																																														
AR	0	MSKCC	GRCh37	X	66766226	66766226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	31	302	0	ENST00000374690.3:c.1238G>T	p.Ser413Ile	p.S413I	ENST00000374690	NM_000044.3	413	aGc/aTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0016433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	191	388	0	ENST00000269305.4:c.559+2T>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PMS2	0	MSKCC	GRCh37	7	6027103	6027103	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	89	67	0	ENST00000265849.7:c.1293G>C	p.Glu431Asp	p.E431D	ENST00000265849	NM_000535.5	431	gaG/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	193	717	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48586250	48586250	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	89	583	0	ENST00000342988.3:c.919G>T	p.Glu307Ter	p.E307*	ENST00000342988	NM_005359.5	307	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	134	653	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	103	487	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713390	30713390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	65	413	0	ENST00000359013.4:c.790A>G	p.Thr264Ala	p.T264A	ENST00000359013	NM_001024847.2	264	Aca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	178	542	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	152	411	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																														
PALB2	0	MSKCC	GRCh37	16	23634347	23634347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	212	733	0	ENST00000261584.4:c.2939G>C	p.Ser980Thr	p.S980T	ENST00000261584	NM_024675.3	980	aGc/aCc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426909	49426909	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	26	326	0	ENST00000301067.7:c.11579A>G	p.Gln3860Arg	p.Q3860R	ENST00000301067	NM_003482.3	3860	cAg/cGg																																																																														
CDK6	0	MSKCC	GRCh37	7	92252389	92252389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	43	472	0	ENST00000265734.4:c.659G>A	p.Arg220His	p.R220H	ENST00000265734	NM_001259.6	220	cGt/cAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	396	523	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0016444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	203	457	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	555	577	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	449	472	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
U2AF1	0	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	79	377	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																														
STK40	0	MSKCC	GRCh37	1	36819977	36819977	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	256	595	0	ENST00000373129.3:c.611T>C	p.Val204Ala	p.V204A	ENST00000373129	NM_032017.1	204	gTg/gCg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197289	94197289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	28	540	0	ENST00000323929.3:c.1215G>T	p.Lys405Asn	p.K405N	ENST00000323929	NM_005591.3	405	aaG/aaT																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732421	74732421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	113	227	0	ENST00000359995.5:c.488C>G	p.Ser163Cys	p.S163C	ENST00000359995	NM_001195427.1	163	tCc/tGc																																																																														
SOS1	0	MSKCC	GRCh37	2	39250272	39250272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	663	996	1	ENST00000402219.2:c.1297G>A	p.Glu433Lys	p.E433K	ENST00000402219	NM_005633.3	433	Gag/Aag																																																																														
FAM175A	0	MSKCC	GRCh37	4	84406180	84406180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	167	472	0	ENST00000321945.7:c.46G>C	p.Gly16Arg	p.G16R	ENST00000321945	NM_139076.2	16	Ggc/Cgc																																																																														
EGFR	0	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	519	401	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	544	577	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249022	55249022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	613	489	0	ENST00000275493.2:c.2320G>A	p.Val774Met	p.V774M	ENST00000275493	NM_005228.3	774	Gtg/Atg																																																																														
GATA3	0	MSKCC	GRCh37	10	8106031	8106031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	149	486	0	ENST00000346208.3:c.851G>A	p.Cys284Tyr	p.C284Y	ENST00000346208		284	tGc/tAc																																																																														
WT1	0	MSKCC	GRCh37	11	32417954	32417954	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	148	397	0	ENST00000332351.3:c.1099-1G>T		p.X367_splice	ENST00000332351	NM_024426.4	367																																																																															
CIC	0	MSKCC	GRCh37	19	42791854	42791854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	379	607	0	ENST00000575354.2:c.740A>G	p.Gln247Arg	p.Q247R	ENST00000575354	NM_015125.3	247	cAg/cGg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50455105	50455105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	131	387	0	ENST00000331340.3:c.652G>A	p.Glu218Lys	p.E218K	ENST00000331340	NM_006060.4	218	Gaa/Aaa																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0016446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	24	138	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	154	475	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0016446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	184	608	9	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	9	636	1	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432543	49432543	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	168	471	0	ENST00000301067.7:c.8596G>T	p.Glu2866Ter	p.E2866*	ENST00000301067	NM_003482.3	2866	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	83	268	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	209	579	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
MITF	0	MSKCC	GRCh37	3	69987061	69987068	+	frameshift_variant	Frame_Shift_Del	DEL	CAAATAAA	CAAATAAA	-			P-0016449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	207	559	0	ENST00000352241.4:c.445_452del	p.Asn149CysfsTer37	p.N149Cfs*37	ENST00000352241	NM_198159.2	148	gCAAATAAA/g																																																																														
RBM10	0	MSKCC	GRCh37	X	47034458	47034459	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0016449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	363	325	0	ENST00000329236.7:c.312_313del	p.Gln105GlyfsTer26	p.Q105Gfs*26	ENST00000329236	NM_001204466.1	104	ttGCag/ttag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	311	570	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	635	847	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	223	440	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
CDH1	0	MSKCC	GRCh37	16	68855957	68855957	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	326	631	0	ENST00000261769.5:c.1766del	p.Asn589MetfsTer24	p.N589Mfs*24	ENST00000261769	NM_004360.3	589	Aat/at																																																																														
IL7R	0	MSKCC	GRCh37	5	35871298	35871298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	208	427	1	ENST00000303115.3:c.520G>A	p.Asp174Asn	p.D174N	ENST00000303115	NM_002185.3	174	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	144	311	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0016455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	424	453	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774771	73774771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	125	575	1	ENST00000254810.4:c.316G>A	p.Glu106Lys	p.E106K	ENST00000254810	NM_005324.3	106	Gaa/Aaa																																																																														
H3F3A	0	MSKCC	GRCh37	1	226252166	226252167	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0016455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	58	155	0	ENST00000366813.1:c.114_115delinsTT	p.Lys38_Pro39delinsAsnSer	p.K38_P39delinsNS	ENST00000366813		38	aaACct/aaTTct																																																																														
ATM	0	MSKCC	GRCh37	11	108203498	108203498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	30	310	0	ENST00000278616.4:c.7798G>C	p.Glu2600Gln	p.E2600Q	ENST00000278616	NM_000051.3	2600	Gag/Cag																																																																														
ATM	0	MSKCC	GRCh37	11	108203511	108203511	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	35	340	0	ENST00000278616.4:c.7811G>C	p.Arg2604Thr	p.R2604T	ENST00000278616	NM_000051.3	2604	aGa/aCa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443530	49443530	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	80	443	0	ENST00000301067.7:c.3841G>T	p.Gly1281Ter	p.G1281*	ENST00000301067	NM_003482.3	1281	Gga/Tga																																																																														
KMT2C	0	MSKCC	GRCh37	7	152008982	152008982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	291	501	0	ENST00000262189.6:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000262189	NM_170606.2	214	Cag/Tag																																																																														
TSC1	0	MSKCC	GRCh37	9	135782740	135782740	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	155	473	0	ENST00000298552.3:c.1281del	p.Ala428GlnfsTer12	p.A428Qfs*12	ENST00000298552	NM_001162426.1	427	tcT/tc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0016456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	210	566	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
CBFB	0	MSKCC	GRCh37	16	67100685	67100685	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	225	519	0	ENST00000412916.2:c.383A>G	p.Asp128Gly	p.D128G	ENST00000412916		128	gAt/gGt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249102	55249103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TATGTCCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAA			P-0016456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	18	680	0	ENST00000275493.2:c.2401_2447dup	p.Trp817MetfsTer25	p.W817Mfs*25	ENST00000275493	NM_005228.3	800	-/TATGTCCGGGAACACAAAGACAATATTGGCTCCCAGTACCTGCTCAA																																																																														
KMT2C	0	MSKCC	GRCh37	7	151949643	151949643	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	223	510	0	ENST00000262189.6:c.1457del	p.Asn486IlefsTer9	p.N486Ifs*9	ENST00000262189	NM_170606.2	486	aAt/at																																																																														
RBM10	0	MSKCC	GRCh37	X	47028886	47028886	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	89	198	0	ENST00000329236.7:c.190C>T	p.Gln64Ter	p.Q64*	ENST00000329236	NM_001204466.1	64	Cag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	144	367	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	28	383	0	ENST00000342988.3:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000342988	NM_005359.5	537	Gac/Tac																																																																														
TBX3	0	MSKCC	GRCh37	12	115110032	115110032	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	147	641	0	ENST00000257566.3:c.1846T>A	p.Ser616Thr	p.S616T	ENST00000257566	NM_016569.3	616	Tct/Act																																																																														
IRS2	0	MSKCC	GRCh37	13	110435004	110435004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	200	543	1	ENST00000375856.3:c.3397G>T	p.Ala1133Ser	p.A1133S	ENST00000375856	NM_003749.2	1133	Gcc/Tcc																																																																														
NF1	0	MSKCC	GRCh37	17	29554234	29554234	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	130	354	1	ENST00000358273.4:c.2252-2A>T		p.X751_splice	ENST00000358273	NM_001042492.2	751																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11113778	11113778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	164	554	0	ENST00000344626.4:c.1886C>G	p.Thr629Arg	p.T629R	ENST00000344626	NM_003072.3	629	aCa/aGa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56180651	56180651	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	74	319	0	ENST00000399503.3:c.3980C>T	p.Ala1327Val	p.A1327V	ENST00000399503	NM_005921.1	1327	gCa/gTa																																																																														
NSD1	0	MSKCC	GRCh37	5	176562798	176562798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	133	607	0	ENST00000439151.2:c.694C>G	p.Gln232Glu	p.Q232E	ENST00000439151	NM_022455.4	232	Cag/Gag																																																																														
FLT4	0	MSKCC	GRCh37	5	180030369	180030369	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	206	547	0	ENST00000261937.6:c.3915T>G	p.Asn1305Lys	p.N1305K	ENST00000261937	NM_182925.4	1305	aaT/aaG																																																																														
EPHA7	0	MSKCC	GRCh37	6	93969150	93969150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	56	359	1	ENST00000369303.4:c.1846G>T	p.Asp616Tyr	p.D616Y	ENST00000369303	NM_004440.3	616	Gac/Tac																																																																														
EPHA7	0	MSKCC	GRCh37	6	93969156	93969156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	31	349	0	ENST00000369303.4:c.1840T>C	p.Tyr614His	p.Y614H	ENST00000369303	NM_004440.3	614	Tat/Cat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8339020	8339020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	75	436	0	ENST00000356435.5:c.5281G>A	p.Glu1761Lys	p.E1761K	ENST00000356435		1761	Gaa/Aaa																																																																														
BTK	0	MSKCC	GRCh37	X	100608342	100608342	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0016464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	168	264	0	ENST00000308731.7:c.1751-3T>C		p.X584_splice	ENST00000308731	NM_000061.2	584																																																																															
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	848	765	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																														
ATM	0	MSKCC	GRCh37	11	108199946	108199947	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	412	335	0	ENST00000278616.4:c.7289dup	p.His2430GlnfsTer2	p.H2430Qfs*2	ENST00000278616	NM_000051.3	2430	cat/cAat																																																																														
RB1	0	MSKCC	GRCh37	13	48954379	48954379	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0016465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	414	292	0	ENST00000267163.4:c.1498+2T>G		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																															
AXL	0	MSKCC	GRCh37	19	41745103	41745103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	283	645	0	ENST00000301178.4:c.1169C>A	p.Thr390Asn	p.T390N	ENST00000301178	NM_021913.4	390	aCc/aAc																																																																														
BTK	0	MSKCC	GRCh37	X	100630140	100630140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	46	434	0	ENST00000308731.7:c.133G>C	p.Glu45Gln	p.E45Q	ENST00000308731	NM_000061.2	45	Gaa/Caa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	72	569	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SMO	0	MSKCC	GRCh37	7	128829039	128829040	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0016466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	11	20	0	ENST00000249373.3:c.67_69dupCTG	p.Leu23dup	p.L23dup	ENST00000249373	NM_005631.4	23	ggg/ggGCTg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115971	8115972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	157	266	0	ENST00000346208.3:c.1318dup	p.Thr440AsnfsTer67	p.T440Nfs*67	ENST00000346208		439	-/A																																																																														
RPTOR	0	MSKCC	GRCh37	17	78704367	78704367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	180	345	0	ENST00000306801.3:c.515C>T	p.Thr172Met	p.T172M	ENST00000306801	NM_020761.2	172	aCg/aTg																																																																														
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0016469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	59	188	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																															
GATA3	0	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	198	564	0	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga																																																																														
LATS2	0	MSKCC	GRCh37	13	21562547	21562547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	20	30	0	ENST00000382592.4:c.1372G>A	p.Val458Met	p.V458M	ENST00000382592	NM_014572.2	458	Gtg/Atg																																																																														
DICER1	0	MSKCC	GRCh37	14	95590713	95590713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	93	305	1	ENST00000343455.3:c.1196A>T	p.Glu399Val	p.E399V	ENST00000343455	NM_177438.2	399	gAg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	643	646	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178919231	178919231	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	391	363	0	ENST00000263967.3:c.716T>G	p.Leu239Arg	p.L239R	ENST00000263967	NM_006218.2	239	cTa/cGa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061461	38061461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	336	283	0	ENST00000250448.2:c.528C>G	p.Ile176Met	p.I176M	ENST00000250448	NM_004496.3	176	atC/atG																																																																														
MPL	0	MSKCC	GRCh37	1	43804317	43804317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	546	526	1	ENST00000372470.3:c.317C>T	p.Pro106Leu	p.P106L	ENST00000372470	NM_005373.2	106	cCg/cTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031871	10031871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1207	510	524	0	ENST00000330684.3:c.952G>A	p.Ala318Thr	p.A318T	ENST00000330684	NM_001134407.1	318	Gcc/Acc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367267	50367267	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	362	363	0	ENST00000331340.3:c.74A>T	p.Asp25Val	p.D25V	ENST00000331340	NM_006060.4	25	gAt/gTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874644	151874645	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0016473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	324	316	0	ENST00000262189.6:c.7893_7894del	p.Gln2632ThrfsTer24	p.Q2632Tfs*24	ENST00000262189	NM_170606.2	2631	tcTCaa/tcaa																																																																														
SPEN	0	MSKCC	GRCh37	1	16258907	16258907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	180	738	2	ENST00000375759.3:c.6172G>A	p.Ala2058Thr	p.A2058T	ENST00000375759	NM_015001.2	2058	Gcc/Acc																																																																														
ARID2	0	MSKCC	GRCh37	12	46285570	46285570	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs78222561		P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	59	212	0	ENST00000334344.6:c.4930C>T	p.Gln1644Ter	p.Q1644*	ENST00000334344	NM_152641.2	1644	Cag/Tag																																																																														
FLT1	0	MSKCC	GRCh37	13	29012485	29012485	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	39	327	0	ENST00000282397.4:c.389-3C>T		p.X130_splice	ENST00000282397	NM_002019.4	130																																																																															
NUP93	0	MSKCC	GRCh37	16	56832399	56832399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	72	342	0	ENST00000308159.5:c.309G>C	p.Lys103Asn	p.K103N	ENST00000308159	NM_014669.4	103	aaG/aaC																																																																														
CBFB	0	MSKCC	GRCh37	16	67063640	67063640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	171	383	0	ENST00000412916.2:c.89C>G	p.Thr30Arg	p.T30R	ENST00000412916		30	aCg/aGg																																																																														
CDH1	0	MSKCC	GRCh37	16	68856002	68856002	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	327	546	3	ENST00000261769.5:c.1810G>T	p.Glu604Ter	p.E604*	ENST00000261769	NM_004360.3	604	Gag/Tag																																																																														
AXL	0	MSKCC	GRCh37	19	41762475	41762475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	115	426	0	ENST00000301178.4:c.2155G>A	p.Glu719Lys	p.E719K	ENST00000301178	NM_021913.4	719	Gag/Aag																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271393	26271393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	96	314	0	ENST00000305910.3:c.220G>A	p.Glu74Lys	p.E74K	ENST00000305910	NM_003534.2	74	Gaa/Aaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151851412	151851412	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	149	568	0	ENST00000262189.6:c.12079G>T	p.Glu4027Ter	p.E4027*	ENST00000262189	NM_170606.2	4027	Gag/Tag																																																																														
MYC	0	MSKCC	GRCh37	8	128753130	128753130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	125	428	0	ENST00000377970.2:c.1291G>A	p.Glu431Lys	p.E431K	ENST00000377970	NM_002467.4	431	Gaa/Aaa																																																																														
JAK2	0	MSKCC	GRCh37	9	5022096	5022096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	93	471	0	ENST00000381652.3:c.109C>T	p.Pro37Ser	p.P37S	ENST00000381652	NM_004972.3	37	Cca/Tca																																																																														
ATRX	0	MSKCC	GRCh37	X	76939175	76939175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	94	552	1	ENST00000373344.5:c.1573C>A	p.Pro525Thr	p.P525T	ENST00000373344	NM_000489.3	525	Cca/Aca																																																																														
ESR1	0	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	171	350	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																														
CDH1	0	MSKCC	GRCh37	16	68844109	68844110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	164	429	0	ENST00000261769.5:c.698dupA	p.His233GlnfsTer11	p.H233Qfs*11	ENST00000261769	NM_004360.3	233	cac/cAac																																																																														
PTPRS	0	MSKCC	GRCh37	19	5240271	5240271	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145504993		P-0016475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	239	611	0	ENST00000357368.4:c.1643C>T	p.Pro548Leu	p.P548L	ENST00000357368	NM_002850.3	548	cCg/cTg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398262	25398262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	19	680	0	ENST00000256078.4:c.57G>T	p.Leu19Phe	p.L19F	ENST00000256078	NM_033360.2	19	ttG/ttT																																																																														
ASXL2	0	MSKCC	GRCh37	2	25994365	25994365	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	16	345	0	ENST00000435504.4:c.448C>G	p.Pro150Ala	p.P150A	ENST00000435504		150	Cca/Gca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49437439	49437439	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	188	600	0	ENST00000301067.7:c.5446G>T	p.Glu1816Ter	p.E1816*	ENST00000301067	NM_003482.3	1816	Gaa/Taa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992619	72992619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	154	431	0	ENST00000268489.5:c.1426G>A	p.Glu476Lys	p.E476K	ENST00000268489	NM_006885.3	476	Gag/Aag																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965707	93965707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	104	538	0	ENST00000369303.4:c.2221G>A	p.Gly741Arg	p.G741R	ENST00000369303	NM_004440.3	741	Gga/Aga																																																																														
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	384	702	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																														
FGFR1	0	MSKCC	GRCh37	8	38277065	38277065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	136	390	0	ENST00000425967.3:c.1363C>T	p.Arg455Cys	p.R455C	ENST00000425967	NM_001174067.1	455	Cgc/Tgc																																																																														
APC	0	MSKCC	GRCh37	5	112175213	112175213	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	74	223	0	ENST00000257430.4:c.3922A>T	p.Lys1308Ter	p.K1308*	ENST00000257430	NM_000038.5	1308	Aaa/Taa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49418624	49418624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	89	519	2	ENST00000301067.7:c.15890C>T	p.Thr5297Met	p.T5297M	ENST00000301067	NM_003482.3	5297	aCg/aTg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59876603	59876603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	273	414	0	ENST00000259008.2:c.1198G>T	p.Asp400Tyr	p.D400Y	ENST00000259008	NM_032043.2	400	Gac/Tac																																																																														
MDC1	0	MSKCC	GRCh37	6	30675186	30675186	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	141	540	0	ENST00000376406.3:c.3059T>C	p.Ile1020Thr	p.I1020T	ENST00000376406	NM_014641.2	1020	aTc/aCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	36	732	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	41	438	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0016486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	37	491	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	338	806	3	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	157	354	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	0	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	120	374	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	472	579	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TBX3	0	MSKCC	GRCh37	12	115110030	115110031	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	252	678	0	ENST00000257566.3:c.1847_1848del	p.Ser616CysfsTer75	p.S616Cfs*75	ENST00000257566	NM_016569.3	616	tCT/t																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43707791	43707791	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	225	513	0	ENST00000382044.4:c.5089+1G>T		p.X1697_splice	ENST00000382044	NM_001141980.1	1697																																																																															
NKX3-1	0	MSKCC	GRCh37	8	23538873	23538873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	123	321	0	ENST00000380871.4:c.566G>A	p.Gly189Glu	p.G189E	ENST00000380871	NM_006167.3	189	gGa/gAa																																																																														
AMER1	0	MSKCC	GRCh37	X	63412438	63412438	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	260	819	0	ENST00000330258.3:c.729del	p.Glu244AsnfsTer38	p.E244Nfs*38	ENST00000330258	NM_152424.3	243	ccA/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	630	640	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856604	111856604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	90	166	0	ENST00000341259.2:c.655C>G	p.Arg219Gly	p.R219G	ENST00000341259	NM_005475.2	219	Cgc/Ggc																																																																														
CDK12	0	MSKCC	GRCh37	17	37657651	37657652	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0016488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	458	570	2	ENST00000447079.4:c.2568_2569delinsTT	p.His857Tyr	p.H857Y	ENST00000447079	NM_015083.1	856	ctGCat/ctTTat																																																																														
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0016490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	66	883	1	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165782	118165782	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	64	354	0	ENST00000369448.3:c.292G>C	p.Ala98Pro	p.A98P	ENST00000369448	NM_017709.3	98	Gct/Cct																																																																														
MYOD1	0	MSKCC	GRCh37	11	17742459	17742459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	44	528	0	ENST00000250003.3:c.641G>T	p.Ser214Ile	p.S214I	ENST00000250003	NM_002478.4	214	aGc/aTc																																																																														
ATM	0	MSKCC	GRCh37	11	108198475	108198475	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	115	432	0	ENST00000278616.4:c.7079A>C	p.Tyr2360Ser	p.Y2360S	ENST00000278616	NM_000051.3	2360	tAt/tCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	260	750	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TBX3	0	MSKCC	GRCh37	12	115109809	115109809	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	61	717	0	ENST00000257566.3:c.2069C>G	p.Ser690Cys	p.S690C	ENST00000257566	NM_016569.3	690	tCt/tGt																																																																														
POLE	0	MSKCC	GRCh37	12	133214645	133214645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	85	422	1	ENST00000320574.5:c.5633G>T	p.Arg1878Leu	p.R1878L	ENST00000320574	NM_006231.2	1878	cGc/cTc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678476	88678476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	61	559	0	ENST00000360948.2:c.1060C>A	p.Gln354Lys	p.Q354K	ENST00000360948	NM_001012338.2	354	Caa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7576923	7576928	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGTGCT	AGTGCT	-			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	99	537	0	ENST00000269305.4:c.920-2_923del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	134	870	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
EZH1	0	MSKCC	GRCh37	17	40859988	40859988	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	108	469	0	ENST00000428826.2:c.1648T>C	p.Cys550Arg	p.C550R	ENST00000428826		550	Tgc/Cgc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602797	10602797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	139	763	0	ENST00000171111.5:c.781C>T	p.Arg261Trp	p.R261W	ENST00000171111	NM_203500.1	261	Cgg/Tgg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171732	36171732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	122	319	1	ENST00000300305.3:c.833C>T	p.Pro278Leu	p.P278L	ENST00000300305		278	cCg/cTg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133824	55133825	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	83	529	1	ENST00000257290.5:c.1037_1038delinsTT	p.Arg346Ile	p.R346I	ENST00000257290	NM_006206.4	346	aGG/aTT																																																																														
EPHA5	0	MSKCC	GRCh37	4	66231751	66231751	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	53	441	1	ENST00000273854.3:c.1949A>T	p.Tyr650Phe	p.Y650F	ENST00000273854	NM_004439.5	650	tAc/tTc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900170	101900170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	71	234	0	ENST00000374994.4:c.604G>A	p.Ala202Thr	p.A202T	ENST00000374994	NM_004612.2	202	Gcg/Acg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	177	420	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	97	315	0				ENST00000310581	NM_198253.2																																																																																
HRAS	0	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1453	211	541	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
HRAS	0	MSKCC	GRCh37	11	533548	533548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	781	497	0	ENST00000311189.7:c.355G>A	p.Asp119Asn	p.D119N	ENST00000311189		119	Gac/Aac																																																																														
ESR1	0	MSKCC	GRCh37	6	152420067	152420067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141662120		P-0016496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	139	274	0	ENST00000206249.3:c.1754C>T	p.Thr585Met	p.T585M	ENST00000206249	NM_000125.3	585	aCg/aTg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156845354	156845354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	178	438	1	ENST00000524377.1:c.1397T>C	p.Leu466Pro	p.L466P	ENST00000524377	NM_002529.3	466	cTg/cCg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49447080	49447080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	163	383	0	ENST00000301067.7:c.864G>A	p.Met288Ile	p.M288I	ENST00000301067	NM_003482.3	288	atG/atA																																																																														
POLE	0	MSKCC	GRCh37	12	133244224	133244224	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	113	292	0	ENST00000320574.5:c.2184del	p.Ala730ProfsTer62	p.A730Pfs*62	ENST00000320574	NM_006231.2	728	cgG/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	47	526	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138433507	138433507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	43	367	1	ENST00000289153.2:c.1105G>A	p.Val369Ile	p.V369I	ENST00000289153	NM_006219.2	369	Gta/Ata																																																																														
PTEN	0	MSKCC	GRCh37	10	89692780	89692780	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	322	469	0	ENST00000371953.3:c.264T>A	p.Tyr88Ter	p.Y88*	ENST00000371953	NM_000314.4	88	taT/taA																																																																														
SETD2	0	MSKCC	GRCh37	3	47098493	47098493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	114	351	0	ENST00000409792.3:c.6781G>A	p.Ala2261Thr	p.A2261T	ENST00000409792	NM_014159.6	2261	Gcc/Acc																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200428	138200428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	163	421	0	ENST00000237289.4:c.1846G>A	p.Gly616Arg	p.G616R	ENST00000237289	NM_001270507.1	616	Ggg/Agg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	720	396	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720870	89720870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	72	304	0	ENST00000371953.3:c.1021T>G	p.Phe341Val	p.F341V	ENST00000371953	NM_000314.4	341	Ttt/Gtt																																																																														
POLE	0	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	82	502	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	60	472	0	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																														
GNAS	0	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	50	318	0	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																														
EP300	0	MSKCC	GRCh37	22	41556696	41556696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	52	410	0	ENST00000263253.7:c.3641C>A	p.Ser1214Tyr	p.S1214Y	ENST00000263253	NM_001429.3	1214	tCt/tAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	67	404	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	67	300	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
NF1	0	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	33	271	1	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
FUBP1	0	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	59	430	1	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175490	112175490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	35	264	0	ENST00000257430.4:c.4199C>T	p.Ser1400Leu	p.S1400L	ENST00000257430	NM_000038.5	1400	tCg/tTg																																																																														
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	56	442	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	48941654	48941654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	36	309	0	ENST00000267163.4:c.964G>A	p.Glu322Lys	p.E322K	ENST00000267163	NM_000321.2	322	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112177368	112177368	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	46	343	0	ENST00000257430.4:c.6077C>A	p.Ser2026Tyr	p.S2026Y	ENST00000257430	NM_000038.5	2026	tCt/tAt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15950304	15950304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	105	586	1	ENST00000268712.3:c.6640C>T	p.Arg2214Cys	p.R2214C	ENST00000268712	NM_006311.3	2214	Cgt/Tgt																																																																														
SOS1	0	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	54	390	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
ERCC5	0	MSKCC	GRCh37	13	103528078	103528078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	61	326	0	ENST00000355739.4:c.3386C>T	p.Ser1129Leu	p.S1129L	ENST00000355739	NM_000123.3	1129	tCg/tTg																																																																														
DDR2	0	MSKCC	GRCh37	1	162724542	162724542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	47	323	2	ENST00000367921.3:c.314G>A	p.Arg105His	p.R105H	ENST00000367921	NM_006182.2	105	cGc/cAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420670	49420670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	79	351	0	ENST00000301067.7:c.15079C>T	p.Arg5027Ter	p.R5027*	ENST00000301067	NM_003482.3	5027	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101309	27101309	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	58	533	0	ENST00000324856.7:c.4591G>T	p.Glu1531Ter	p.E1531*	ENST00000324856	NM_006015.4	1531	Gaa/Taa																																																																														
JAK1	0	MSKCC	GRCh37	1	65349125	65349125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	44	434	0	ENST00000342505.4:c.40G>A	p.Ala14Thr	p.A14T	ENST00000342505	NM_002227.2	14	Gct/Act																																																																														
NRAS	0	MSKCC	GRCh37	1	115251236	115251236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	59	416	0	ENST00000369535.4:c.490C>T	p.Arg164Cys	p.R164C	ENST00000369535	NM_002524.4	164	Cgc/Tgc																																																																														
RIT1	0	MSKCC	GRCh37	1	155870376	155870376	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	82	439	0	ENST00000368323.3:c.463G>T	p.Glu155Ter	p.E155*	ENST00000368323	NM_006912.5	155	Gaa/Taa																																																																														
PTEN	0	MSKCC	GRCh37	10	89720822	89720822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	48	270	0	ENST00000371953.3:c.973C>T	p.Leu325Phe	p.L325F	ENST00000371953	NM_000314.4	325	Ctt/Ttt																																																																														
PGR	0	MSKCC	GRCh37	11	100909867	100909867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	34	266	0	ENST00000325455.5:c.2782C>T	p.Leu928Phe	p.L928F	ENST00000325455	NM_001202474.3	928	Ctt/Ttt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907120	32907120	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	74	474	0	ENST00000380152.3:c.1505A>C	p.Lys502Thr	p.K502T	ENST00000380152		502	aAa/aCa																																																																														
NUP93	0	MSKCC	GRCh37	16	56873505	56873505	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	58	384	0	ENST00000308159.5:c.2209T>G	p.Phe737Val	p.F737V	ENST00000308159	NM_014669.4	737	Ttc/Gtc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993339	72993339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	84	512	1	ENST00000268489.5:c.706G>A	p.Val236Met	p.V236M	ENST00000268489	NM_006885.3	236	Gtg/Atg																																																																														
SUZ12	0	MSKCC	GRCh37	17	30322591	30322591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	57	368	0	ENST00000322652.5:c.1604G>A	p.Arg535Gln	p.R535Q	ENST00000322652	NM_015355.2	535	cGa/cAa																																																																														
BRIP1	0	MSKCC	GRCh37	17	59878807	59878807	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	34	283	0	ENST00000259008.2:c.947T>G	p.Val316Gly	p.V316G	ENST00000259008	NM_032043.2	316	gTt/gGt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71021790	71021790	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	62	294	0	ENST00000318789.4:c.1568T>A	p.Phe523Tyr	p.F523Y	ENST00000318789	NM_032682.5	523	tTt/tAt																																																																														
SHQ1	0	MSKCC	GRCh37	3	72866487	72866487	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	60	391	0	ENST00000325599.8:c.776A>C	p.Lys259Thr	p.K259T	ENST00000325599	NM_018130.2	259	aAa/aCa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916948	178916950	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	48	360	0	ENST00000263967.3:c.337_339delCTC	p.Leu113del	p.L113del	ENST00000263967	NM_006218.2	112	aTCCtc/atc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467954	66467954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	50	347	0	ENST00000273854.3:c.315G>T	p.Met105Ile	p.M105I	ENST00000273854	NM_004439.5	105	atG/atT																																																																														
FAT1	0	MSKCC	GRCh37	4	187539242	187539242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	47	286	0	ENST00000441802.2:c.8498C>T	p.Ala2833Val	p.A2833V	ENST00000441802	NM_005245.3	2833	gCa/gTa																																																																														
ROS1	0	MSKCC	GRCh37	6	117639384	117639384	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	63	527	0	ENST00000368508.3:c.5972A>C	p.Lys1991Thr	p.K1991T	ENST00000368508	NM_002944.2	1991	aAg/aCg																																																																														
LATS1	0	MSKCC	GRCh37	6	150001146	150001146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	49	464	0	ENST00000253339.5:c.2458C>A	p.His820Asn	p.H820N	ENST00000253339		820	Cat/Aat																																																																														
LATS1	0	MSKCC	GRCh37	6	150001305	150001305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	70	496	1	ENST00000253339.5:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000253339		767	Cgt/Tgt																																																																														
ABL1	0	MSKCC	GRCh37	9	133730455	133730455	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	38	302	0	ENST00000318560.5:c.521A>G	p.Tyr174Cys	p.Y174C	ENST00000318560	NM_005157.4	174	tAc/tGc																																																																														
STAG2	0	MSKCC	GRCh37	X	123197860	123197860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	82	423	0	ENST00000218089.9:c.1984G>A	p.Ala662Thr	p.A662T	ENST00000218089	NM_001042749.1	662	Gca/Aca																																																																														
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	30	378	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	77	484	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53243999	53243999	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	53	513	3	ENST00000375401.3:c.994C>T	p.Arg332Ter	p.R332*	ENST00000375401	NM_004187.3	332	Cga/Tga																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32164800	32164800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	52	422	0	ENST00000375023.3:c.5102G>A	p.Gly1701Glu	p.G1701E	ENST00000375023	NM_004557.3	1701	gGg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	368	489	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0016508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	792	494	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
HGF	0	MSKCC	GRCh37	7	81350155	81350155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	388	324	0	ENST00000222390.5:c.1177C>T	p.Arg393Cys	p.R393C	ENST00000222390	NM_000601.4	393	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175240	112175256	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGATCCTGTGAGCGA	GAAGATCCTGTGAGCGA	-			P-0016508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	311	250	0	ENST00000257430.4:c.3949_3965del	p.Glu1317SerfsTer9	p.E1317Sfs*9	ENST00000257430	NM_000038.5	1317	GAAGATCCTGTGAGCGAa/a																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	8	577	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99478082	99478082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	186	349	1	ENST00000268035.6:c.2986C>T	p.Arg996Trp	p.R996W	ENST00000268035	NM_000875.3	996	Cgg/Tgg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	96	229	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	198	496	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741707	145741707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	142	502	3	ENST00000428558.2:c.796G>A	p.Glu266Lys	p.E266K	ENST00000428558	NM_004260.3	266	Gag/Aag																																																																														
CSF1R	0	MSKCC	GRCh37	5	149460401	149460401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	239	421	0	ENST00000286301.3:c.236C>T	p.Thr79Met	p.T79M	ENST00000286301	NM_005211.3	79	aCg/aTg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	179	410	0	ENST00000274335.5:c.1727_1729delCGA	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	289	699	1	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
BAP1	0	MSKCC	GRCh37	3	52440912	52440912	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	51	488	0	ENST00000460680.1:c.592delG	p.Glu198ArgfsTer33	p.E198Rfs*33	ENST00000460680	NM_004656.3	198	Gag/ag																																																																														
TSC1	0	MSKCC	GRCh37	9	135779084	135779084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	81	390	3	ENST00000298552.3:c.2162G>A	p.Arg721His	p.R721H	ENST00000298552	NM_001162426.1	721	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	308	668	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	302	536	0	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	317	672	0	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
PTCH1	0	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	92	516	1	ENST00000331920.6:c.290delA	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910346	29910346	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	93	410	0	ENST00000376809.5:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000376809	NM_002116.7	6	Ccc/cc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	86	461	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
NUP93	0	MSKCC	GRCh37	16	56872937	56872937	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	73	355	2	ENST00000308159.5:c.2097delT	p.Phe699LeufsTer19	p.F699Lfs*19	ENST00000308159	NM_014669.4	698	Ttt/tt																																																																														
MGA	0	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	327	436	1	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																														
MST1	0	MSKCC	GRCh37	3	49722906	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	53	126	0	ENST00000449682.2:c.1421del	p.Pro474GlnfsTer52	p.P474Qfs*52	ENST00000449682	NM_020998.3	474	cCa/ca																																																																														
GNA11	0	MSKCC	GRCh37	19	3110155	3110155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	194	381	0	ENST00000078429.4:c.145G>A	p.Glu49Lys	p.E49K	ENST00000078429	NM_002067.2	49	Gag/Aag																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66526499	66526499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	64	387	1	ENST00000358598.2:c.1055G>A	p.Arg352Gln	p.R352Q	ENST00000358598	NM_212471.2	352	cGa/cAa																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138137	64138137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	282	554	0	ENST00000334205.4:c.2060C>T	p.Thr687Met	p.T687M	ENST00000334205	NM_003942.2	687	aCg/aTg																																																																														
PMS1	0	MSKCC	GRCh37	2	190682810	190682810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	135	569	2	ENST00000441310.2:c.492delA	p.Lys164AsnfsTer6	p.K164Nfs*6	ENST00000441310	NM_000534.4	162	gcA/gc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468269	50468269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	48	544	0	ENST00000331340.3:c.1504C>T	p.Arg502Trp	p.R502W	ENST00000331340	NM_006060.4	502	Cgg/Tgg																																																																														
MYCN	0	MSKCC	GRCh37	2	16085996	16085996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	102	500	0	ENST00000281043.3:c.1172G>A	p.Arg391His	p.R391H	ENST00000281043	NM_005378.4	391	cGc/cAc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46279831	46279836	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	29	364	0	ENST00000371998.3:c.3762_3767del	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1253	CAGCAA/-																																																																														
TAP1	0	MSKCC	GRCh37	6	32814943	32814943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	300	473	0	ENST00000354258.4:c.2122C>T	p.Arg708Ter	p.R708*	ENST00000354258	NM_000593.5	708	Cga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	391	756	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	307	582	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023909	27023909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	134	140	0	ENST00000324856.7:c.1015G>T	p.Ala339Ser	p.A339S	ENST00000324856	NM_006015.4	339	Gct/Tct																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099017	27099017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	347	556	1	ENST00000324856.7:c.3433C>T	p.Gln1145Ter	p.Q1145*	ENST00000324856	NM_006015.4	1145	Cag/Tag																																																																														
GATA3	0	MSKCC	GRCh37	10	8115975	8115975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	136	271	0	ENST00000346208.3:c.1321G>A	p.Ala441Thr	p.A441T	ENST00000346208		441	Gcc/Acc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94219171	94219171	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	337	639	0	ENST00000323929.3:c.233T>C	p.Leu78Ser	p.L78S	ENST00000323929	NM_005591.3	78	tTa/tCa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375464	118375464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	76	312	0	ENST00000534358.1:c.8857G>T	p.Ala2953Ser	p.A2953S	ENST00000534358	NM_005933.3	2953	Gct/Tct																																																																														
FLT1	0	MSKCC	GRCh37	13	28980033	28980033	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	96	336	0	ENST00000282397.4:c.1437-2del		p.X479_splice	ENST00000282397	NM_002019.4	479																																																																															
BLM	0	MSKCC	GRCh37	15	91304351	91304351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	325	593	0	ENST00000355112.3:c.1748C>T	p.Ala583Val	p.A583V	ENST00000355112	NM_000057.2	583	gCc/gTc																																																																														
EZH1	0	MSKCC	GRCh37	17	40879742	40879742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	109	545	0	ENST00000428826.2:c.157A>G	p.Thr53Ala	p.T53A	ENST00000428826		53	Acc/Gcc																																																																														
RNF43	0	MSKCC	GRCh37	17	56438238	56438238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	267	399	1	ENST00000407977.2:c.755G>A	p.Cys252Tyr	p.C252Y	ENST00000407977		252	tGc/tAc																																																																														
CD79B	0	MSKCC	GRCh37	17	62007739	62007739	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	102	210	0	ENST00000392795.3:c.128C>A	p.Ala43Asp	p.A43D	ENST00000392795	NM_001039933.1	43	gCt/gAt																																																																														
POLD1	0	MSKCC	GRCh37	19	50906370	50906370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	45	529	1	ENST00000440232.2:c.1036del	p.Glu346SerfsTer47	p.E346Sfs*47	ENST00000440232	NM_002691.3	344	tGg/tg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25536832	25536832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	198	421	0	ENST00000264709.3:c.22G>A	p.Gly8Ser	p.G8S	ENST00000264709	NM_175629.2	8	Ggc/Agc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266155	198266155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	38	463	0	ENST00000335508.6:c.2465G>T	p.Arg822Met	p.R822M	ENST00000335508	NM_012433.2	822	aGg/aTg																																																																														
INHA	0	MSKCC	GRCh37	2	220437353	220437353	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	150	542	0	ENST00000243786.2:c.257T>C	p.Phe86Ser	p.F86S	ENST00000243786	NM_002191.3	86	tTc/tCc																																																																														
IRS1	0	MSKCC	GRCh37	2	227662184	227662184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	291	638	2	ENST00000305123.5:c.1271G>A	p.Gly424Asp	p.G424D	ENST00000305123	NM_005544.2	424	gGt/gAt																																																																														
PDCD1	0	MSKCC	GRCh37	2	242795061	242795061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	296	649	4	ENST00000334409.5:c.148G>A	p.Ala50Thr	p.A50T	ENST00000334409	NM_005018.2	50	Gcc/Acc																																																																														
GNAS	0	MSKCC	GRCh37	20	57485766	57485766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	167	381	0	ENST00000371085.3:c.1067G>A	p.Arg356His	p.R356H	ENST00000371085	NM_000516.4	356	cGt/cAt																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24159112	24159112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	238	360	0	ENST00000263121.7:c.784G>A	p.Val262Ile	p.V262I	ENST00000263121	NM_003073.3	262	Gtc/Atc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178948079	178948079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	188	377	0	ENST00000263967.3:c.2851C>T	p.Arg951Cys	p.R951C	ENST00000263967	NM_006218.2	951	Cgt/Tgt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806690	1806690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	94	471	0	ENST00000260795.2:c.1406G>A	p.Arg469Gln	p.R469Q	ENST00000260795		469	cGg/cAg																																																																														
FAT1	0	MSKCC	GRCh37	4	187539653	187539653	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201751862		P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	211	411	0	ENST00000441802.2:c.8087C>T	p.Pro2696Leu	p.P2696L	ENST00000441802	NM_005245.3	2696	cCg/cTg																																																																														
TAP2	0	MSKCC	GRCh37	6	32790089	32790089	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	173	320	0	ENST00000374899.4:c.1939C>A	p.Leu647Ile	p.L647I	ENST00000374899	NM_018833.2	647	Ctt/Att																																																																														
TRAF2	0	MSKCC	GRCh37	9	139793332	139793332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	61	467	0	ENST00000247668.2:c.140C>T	p.Ala47Val	p.A47V	ENST00000247668	NM_021138.3	47	gCg/gTg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120471762	120471762	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	64	541	1	ENST00000256646.2:c.3729T>A	p.Asp1243Glu	p.D1243E	ENST00000256646	NM_024408.3	1243	gaT/gaA																																																																														
FGF19	0	MSKCC	GRCh37	11	69514107	69514107	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	143	554	0	ENST00000294312.3:c.574C>A	p.Leu192Met	p.L192M	ENST00000294312	NM_005117.2	192	Ctg/Atg																																																																														
BIRC3	0	MSKCC	GRCh37	11	102207745	102207745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	38	472	0	ENST00000263464.3:c.1727T>C	p.Val576Ala	p.V576A	ENST00000263464	NM_001165.4	576	gTa/gCa																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40678575	40678575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	121	560	1	ENST00000249776.8:c.317G>T	p.Arg106Leu	p.R106L	ENST00000249776	NM_033286.3	106	cGg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	101	502	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																														
STK11	0	MSKCC	GRCh37	19	1220599	1220617	+	frameshift_variant	Frame_Shift_Del	DEL	CGGACGACACCTGCCGGAC	CGGACGACACCTGCCGGAC	TGT			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	177	599	3	ENST00000326873.7:c.617_635delinsTGT	p.Ala206ValfsTer76	p.A206Vfs*76	ENST00000326873	NM_000455.4	206	gCGGACGACACCTGCCGGACc/gTGTc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171681	36171681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	63	308	0	ENST00000300305.3:c.884C>A	p.Ser295Tyr	p.S295Y	ENST00000300305		295	tCt/tAt																																																																														
TP63	0	MSKCC	GRCh37	3	189455552	189455552	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	155	555	0	ENST00000264731.3:c.86T>C	p.Phe29Ser	p.F29S	ENST00000264731	NM_003722.4	29	tTc/tCc																																																																														
MDC1	0	MSKCC	GRCh37	6	30671636	30671636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	51	438	0	ENST00000376406.3:c.5324C>T	p.Ser1775Phe	p.S1775F	ENST00000376406	NM_014641.2	1775	tCt/tTt																																																																														
HGF	0	MSKCC	GRCh37	7	81346634	81346634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	84	334	0	ENST00000222390.5:c.1319G>T	p.Cys440Phe	p.C440F	ENST00000222390	NM_000601.4	440	tGc/tTc																																																																														
BRAF	0	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	395	489	0	ENST00000288602.6:c.1790T>A	p.Leu597Gln	p.L597Q	ENST00000288602	NM_004333.4	597	cTa/cAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8501029	8501029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	77	310	0	ENST00000356435.5:c.1853G>T	p.Cys618Phe	p.C618F	ENST00000356435		618	tGc/tTc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87475992	87475992	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	133	868	0	ENST00000277120.3:c.1434A>T	p.Arg478Ser	p.R478S	ENST00000277120		478	agA/agT																																																																														
RBM10	0	MSKCC	GRCh37	X	47044557	47044557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	81	330	1	ENST00000329236.7:c.1820G>T	p.Arg607Leu	p.R607L	ENST00000329236	NM_001204466.1	607	cGg/cTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	105	365	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	105	365	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	129	570	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	105	365	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
STK11	0	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	126	464	0	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599969	10599969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	176	631	0	ENST00000171111.5:c.1607G>C	p.Arg536Pro	p.R536P	ENST00000171111	NM_203500.1	536	cGc/cCc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11151992	11151992	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	103	387	2	ENST00000344626.4:c.4180G>T	p.Glu1394Ter	p.E1394*	ENST00000344626	NM_003072.3	1394	Gag/Tag																																																																														
FAT1	0	MSKCC	GRCh37	4	187538329	187538329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	124	416	0	ENST00000441802.2:c.8905G>T	p.Val2969Phe	p.V2969F	ENST00000441802	NM_005245.3	2969	Gtt/Ttt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877899	151877899	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	82	318	0	ENST00000262189.6:c.7046T>A	p.Phe2349Tyr	p.F2349Y	ENST00000262189	NM_170606.2	2349	tTc/tAc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177635	56177635	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	244	355	0	ENST00000399503.3:c.2608C>T	p.Gln870Ter	p.Q870*	ENST00000399503	NM_005921.1	870	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	467	603	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																														
ATRX	0	MSKCC	GRCh37	X	76855019	76855019	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	304	271	1	ENST00000373344.5:c.5817del	p.Asp1940IlefsTer15	p.D1940Ifs*15	ENST00000373344	NM_000489.3	1939	aaA/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	463	574	0	ENST00000269305.4:c.814delG	p.Val272CysfsTer73	p.V272Cfs*73	ENST00000269305	NM_001126112.2	272	Gtg/tg																																																																														
STK11	0	MSKCC	GRCh37	19	1220507	1220507	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0016531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	250	497	0	ENST00000326873.7:c.597+3A>T		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																															
ATM	0	MSKCC	GRCh37	11	108115753	108115753	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	54	341	0	ENST00000278616.4:c.901G>T	p.Gly301Cys	p.G301C	ENST00000278616	NM_000051.3	301	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	155	471	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3820582	3820582	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1429	232	387	0	ENST00000262367.5:c.2869C>G	p.Pro957Ala	p.P957A	ENST00000262367	NM_004380.2	957	Cct/Gct																																																																														
PTEN	0	MSKCC	GRCh37	10	89711875	89711875	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	114	388	0	ENST00000371953.3:c.493G>A	p.Gly165Arg	p.G165R	ENST00000371953	NM_000314.4	165	Gga/Aga																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991703	72991703	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201821212		P-0016538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	146	263	0	ENST00000268489.5:c.2342C>T	p.Ala781Val	p.A781V	ENST00000268489	NM_006885.3	781	gCg/gTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3820660	3820660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1835	308	483	0	ENST00000262367.5:c.2791C>G	p.Gln931Glu	p.Q931E	ENST00000262367	NM_004380.2	931	Caa/Gaa																																																																														
RAD51C	0	MSKCC	GRCh37	17	56787292	56787292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1256	352	573	1	ENST00000337432.4:c.778C>T	p.Arg260Trp	p.R260W	ENST00000337432	NM_058216.2	260	Cgg/Tgg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980814	40980814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	127	532	0	ENST00000373198.4:c.1672C>A	p.Pro558Thr	p.P558T	ENST00000373198	NM_133170.3	558	Cca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	275	512	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PARP1	0	MSKCC	GRCh37	1	226552774	226552774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	331	447	0	ENST00000366794.5:c.2587G>T	p.Gly863Trp	p.G863W	ENST00000366794	NM_001618.3	863	Ggg/Tgg																																																																														
GLI1	0	MSKCC	GRCh37	12	57861856	57861856	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	154	450	0	ENST00000228682.2:c.1157T>A	p.Val386Glu	p.V386E	ENST00000228682	NM_005269.2	386	gTg/gAg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152082	11152082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	164	413	0	ENST00000344626.4:c.4270C>T	p.Pro1424Ser	p.P1424S	ENST00000344626	NM_003072.3	1424	Ccg/Tcg																																																																														
RBM10	0	MSKCC	GRCh37	X	47044839	47044839	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0016539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	158	457	0	ENST00000329236.7:c.1933-2A>G		p.X645_splice	ENST00000329236	NM_001204466.1	645																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	642	560	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PAK1	0	MSKCC	GRCh37	11	77047173	77047173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	489	437	0	ENST00000356341.3:c.1371G>A	p.Met457Ile	p.M457I	ENST00000356341	NM_002576.4	457	atG/atA																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061169	38061169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	162	204	0	ENST00000250448.2:c.820G>A	p.Ala274Thr	p.A274T	ENST00000250448	NM_004496.3	274	Gcc/Acc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30105630	30105631	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	454	657	1	ENST00000331968.5:c.1055_1056delinsAA	p.Arg352Lys	p.R352K	ENST00000331968	NM_002742.2	352	aGG/aAA																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	280	310	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																														
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	428	541	2	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	366	473	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CDK12	0	MSKCC	GRCh37	17	37618629	37618629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1279	433	533	0	ENST00000447079.4:c.305C>T	p.Ser102Leu	p.S102L	ENST00000447079	NM_015083.1	102	tCa/tTa																																																																														
CDK12	0	MSKCC	GRCh37	17	37618658	37618658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1430	445	579	1	ENST00000447079.4:c.334C>T	p.Arg112Cys	p.R112C	ENST00000447079	NM_015083.1	112	Cgt/Tgt																																																																														
CDK12	0	MSKCC	GRCh37	17	37619145	37619145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	397	461	0	ENST00000447079.4:c.821C>G	p.Ser274Trp	p.S274W	ENST00000447079	NM_015083.1	274	tCg/tGg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	963	563	2	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
STAT5B	0	MSKCC	GRCh37	17	40379633	40379633	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	375	515	0	ENST00000293328.3:c.199G>C	p.Glu67Gln	p.E67Q	ENST00000293328	NM_012448.3	67	Gag/Cag																																																																														
DNMT1	0	MSKCC	GRCh37	19	10264986	10264986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	241	300	0	ENST00000340748.4:c.1954C>T	p.Arg652Ter	p.R652*	ENST00000340748		652	Cga/Tga																																																																														
AKT2	0	MSKCC	GRCh37	19	40748577	40748577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1321	88	430	0	ENST00000392038.2:c.305C>A	p.Ala102Asp	p.A102D	ENST00000392038	NM_001626.4	102	gCc/gAc																																																																														
MLH1	0	MSKCC	GRCh37	3	37081709	37081709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	403	546	0	ENST00000231790.2:c.1591G>A	p.Val531Met	p.V531M	ENST00000231790	NM_000249.3	531	Gtg/Atg																																																																														
FAT1	0	MSKCC	GRCh37	4	187538311	187538311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	380	550	0	ENST00000441802.2:c.8923G>A	p.Glu2975Lys	p.E2975K	ENST00000441802	NM_005245.3	2975	Gaa/Aaa																																																																														
DROSHA	0	MSKCC	GRCh37	5	31410981	31410981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	434	528	0	ENST00000344624.3:c.3539C>G	p.Ser1180Cys	p.S1180C	ENST00000344624		1180	tCt/tGt																																																																														
TAP2	0	MSKCC	GRCh37	6	32803122	32803122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	371	380	3	ENST00000374899.4:c.754C>T	p.Arg252Trp	p.R252W	ENST00000374899	NM_018833.2	252	Cgg/Tgg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106522604	106522604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	274	390	0	ENST00000359195.3:c.2581G>A	p.Asp861Asn	p.D861N	ENST00000359195	NM_002649.2	861	Gat/Aat																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	89	277	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	89	277	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1389	188	515	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	89	277	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108235837	108235837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	203	312	0	ENST00000278616.4:c.8879G>T	p.Trp2960Leu	p.W2960L	ENST00000278616	NM_000051.3	2960	tGg/tTg																																																																														
SHOC2	0	MSKCC	GRCh37	10	112769514	112769514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1404	80	565	0	ENST00000369452.4:c.1466G>T	p.Gly489Val	p.G489V	ENST00000369452	NM_007373.3	489	gGc/gTc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18466960	18466960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	146	439	0	ENST00000266497.5:c.1099C>T	p.Gln367Ter	p.Q367*	ENST00000266497		367	Cag/Tag																																																																														
PRKD1	0	MSKCC	GRCh37	14	30093386	30093386	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1329	80	483	0	ENST00000331968.5:c.1877A>T	p.Gln626Leu	p.Q626L	ENST00000331968	NM_002742.2	626	cAg/cTg																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39584366	39584366	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	78	268	0	ENST00000262039.4:c.1031A>T	p.Glu344Val	p.E344V	ENST00000262039	NM_002647.2	344	gAg/gTg																																																																														
JAK3	0	MSKCC	GRCh37	19	17945794	17945794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	86	408	0	ENST00000458235.1:c.2066C>A	p.Pro689His	p.P689H	ENST00000458235	NM_000215.3	689	cCc/cAc																																																																														
KDR	0	MSKCC	GRCh37	4	55955857	55955857	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	125	402	0	ENST00000263923.4:c.3304+1G>T		p.X1102_splice	ENST00000263923	NM_002253.2	1102																																																																															
EZH2	0	MSKCC	GRCh37	7	148508754	148508754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	100	353	0	ENST00000320356.2:c.1910T>G	p.Val637Gly	p.V637G	ENST00000320356	NM_004456.4	637	gTg/gGg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44920609	44920609	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1348	181	425	0	ENST00000377967.4:c.1370A>T	p.His457Leu	p.H457L	ENST00000377967	NM_021140.2	457	cAt/cTt																																																																														
RBM10	0	MSKCC	GRCh37	X	47039817	47039817	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	170	575	0	ENST00000329236.7:c.927-1G>T		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																															
PNRC1	0	MSKCC	GRCh37	6	89791110	89791111	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0016544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	45	112	0	ENST00000336032.3:c.497_498delinsT	p.Pro166LeufsTer17	p.P166Lfs*17	ENST00000336032	NM_006813.2	166	cCG/cT																																																																														
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	338	530	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214891	36214891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201094135		P-0016545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	395	574	1	ENST00000222270.7:c.3317G>A	p.Arg1106Gln	p.R1106Q	ENST00000222270	NM_014727.1	1106	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	162	307	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591285	67591285	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	151	346	0	ENST00000274335.5:c.1784del	p.Asn595ThrfsTer67	p.N595Tfs*67	ENST00000274335		595	Aac/ac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	285	576	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	109	427	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	439	641	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
LATS2	0	MSKCC	GRCh37	13	21562729	21562729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	792	465	0	ENST00000382592.4:c.1190G>A	p.Arg397Gln	p.R397Q	ENST00000382592	NM_014572.2	397	cGg/cAg																																																																														
FLCN	0	MSKCC	GRCh37	17	17117112	17117112	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	179	557	0	ENST00000285071.4:c.1597C>T	p.Gln533Ter	p.Q533*	ENST00000285071	NM_144997.5	533	Cag/Tag																																																																														
FLT4	0	MSKCC	GRCh37	5	180043992	180043992	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	147	443	0	ENST00000261937.6:c.3004G>T	p.Glu1002Ter	p.E1002*	ENST00000261937	NM_182925.4	1002	Gag/Tag																																																																														
STAG2	0	MSKCC	GRCh37	X	123184140	123184140	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	103	363	0	ENST00000218089.9:c.998G>C	p.Gly333Ala	p.G333A	ENST00000218089	NM_001042749.1	333	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	704	333	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TSHR	0	MSKCC	GRCh37	14	81563032	81563032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	40	383	0	ENST00000298171.2:c.595G>C	p.Gly199Arg	p.G199R	ENST00000298171	NM_000369.2	199	Ggg/Cgg																																																																														
AXL	0	MSKCC	GRCh37	19	41726544	41726544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	154	494	1	ENST00000301178.4:c.89C>T	p.Thr30Met	p.T30M	ENST00000301178	NM_021913.4	30	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	136	529	1	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
EP300	0	MSKCC	GRCh37	22	41525969	41525970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	76	635	0	ENST00000263253.7:c.1249dup	p.Leu417ProfsTer6	p.L417Pfs*6	ENST00000263253	NM_001429.3	415	ctc/ctCc																																																																														
MED12	0	MSKCC	GRCh37	X	70349882	70349882	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0016554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	190	307	1	ENST00000374080.3:c.3868-3C>T		p.X1290_splice	ENST00000374080		1290																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	23	256	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0016556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	39	482	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
BCL6	604	MSKCC	GRCh37	3	187443345	187443345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	24	304	0	ENST00000232014.4:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000232014	NM_001130845.1	594	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0016556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	40	552	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
RASA1	0	MSKCC	GRCh37	5	86672842	86672842	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	22	232	0	ENST00000274376.6:c.2329G>T	p.Glu777Ter	p.E777*	ENST00000274376	NM_002890.2	777	Gaa/Taa																																																																														
FAT1	0	MSKCC	GRCh37	4	187542357	187542357	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	31	243	0	ENST00000441802.2:c.5383C>T	p.Arg1795Ter	p.R1795*	ENST00000441802	NM_005245.3	1795	Cga/Tga																																																																														
RRAS2	0	MSKCC	GRCh37	11	14303198	14303198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	76	487	1	ENST00000256196.4:c.477G>T	p.Lys159Asn	p.K159N	ENST00000256196		159	aaG/aaT																																																																														
MET	0	MSKCC	GRCh37	7	116398665	116398665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	30	403	0	ENST00000397752.3:c.2255C>A	p.Ser752Tyr	p.S752Y	ENST00000397752	NM_000245.2	752	tCt/tAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	208	421	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	228	403	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112173730	112173730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	138	338	0	ENST00000257430.4:c.2442del	p.Phe814LeufsTer6	p.F814Lfs*6	ENST00000257430	NM_000038.5	813	aaT/aa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435316	49435316	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	113	381	0	ENST00000301067.7:c.6237G>T	p.Gln2079His	p.Q2079H	ENST00000301067	NM_003482.3	2079	caG/caT																																																																														
B2M	0	MSKCC	GRCh37	15	45003805	45003805	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	140	261	0	ENST00000558401.1:c.61A>G	p.Ile21Val	p.I21V	ENST00000558401	NM_004048.2	21	Atc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	653	581	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	474	503	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																														
MAPK1	0	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	311	378	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
TERT	0	MSKCC	GRCh37	5	1294454	1294454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	327	470	0	ENST00000310581.5:c.547C>G	p.Gln183Glu	p.Q183E	ENST00000310581	NM_198253.2	183	Cag/Gag																																																																														
DDR2	0	MSKCC	GRCh37	1	162745588	162745588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	479	515	1	ENST00000367921.3:c.2003G>A	p.Arg668His	p.R668H	ENST00000367921	NM_006182.2	668	cGc/cAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106549	27106549	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	568	777	0	ENST00000324856.7:c.6160G>T	p.Glu2054Ter	p.E2054*	ENST00000324856	NM_006015.4	2054	Gag/Tag																																																																														
PMS1	0	MSKCC	GRCh37	2	190660675	190660675	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	275	266	0	ENST00000441310.2:c.313G>A	p.Glu105Lys	p.E105K	ENST00000441310	NM_000534.4	105	Gag/Aag																																																																														
ATR	0	MSKCC	GRCh37	3	142274890	142274890	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1328	528	556	0	ENST00000350721.4:c.2170C>G	p.Leu724Val	p.L724V	ENST00000350721	NM_001184.3	724	Ctg/Gtg																																																																														
HIST1H3A	0	MSKCC	GRCh37	6	26021044	26021045	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0016562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	173	299	0	ENST00000357647.3:c.327_328del	p.Leu110ValfsTer?	p.L110Vfs*?	ENST00000357647	NM_003529.2	109	aaCCtg/aatg																																																																														
TP53	0	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	184	562	0	ENST00000269305.4:c.657delC	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602767	10602767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	166	510	1	ENST00000171111.5:c.811G>T	p.Val271Leu	p.V271L	ENST00000171111	NM_203500.1	271	Gtg/Ttg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462122	120462122	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	72	419	0	ENST00000256646.2:c.5594A>G	p.Gln1865Arg	p.Q1865R	ENST00000256646	NM_024408.3	1865	cAg/cGg																																																																														
ATM	0	MSKCC	GRCh37	11	108188115	108188115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	58	315	0	ENST00000278616.4:c.6214G>C	p.Gly2072Arg	p.G2072R	ENST00000278616	NM_000051.3	2072	Gga/Cga																																																																														
ETV6	0	MSKCC	GRCh37	12	12022522	12022522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	73	447	1	ENST00000396373.4:c.628C>T	p.Arg210Cys	p.R210C	ENST00000396373	NM_001987.4	210	Cgc/Tgc																																																																														
MSI1	0	MSKCC	GRCh37	12	120791116	120791116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	171	441	0	ENST00000257552.2:c.719C>A	p.Thr240Asn	p.T240N	ENST00000257552	NM_002442.3	240	aCc/aAc																																																																														
FLCN	0	MSKCC	GRCh37	17	17127409	17127409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	148	456	0	ENST00000285071.4:c.445G>T	p.Gly149Cys	p.G149C	ENST00000285071	NM_144997.5	149	Ggc/Tgc																																																																														
FLCN	0	MSKCC	GRCh37	17	17131364	17131364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	139	401	0	ENST00000285071.4:c.88C>T	p.Pro30Ser	p.P30S	ENST00000285071	NM_144997.5	30	Cct/Tct																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221457	36221457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	198	503	0	ENST00000222270.7:c.5216C>G	p.Ser1739Cys	p.S1739C	ENST00000222270	NM_014727.1	1739	tCc/tGc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1955149	1955149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	63	545	0	ENST00000382891.5:c.2236A>C	p.Lys746Gln	p.K746Q	ENST00000382891	NM_133335.3	746	Aaa/Caa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1955215	1955215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	55	397	0	ENST00000382891.5:c.2302C>T	p.His768Tyr	p.H768Y	ENST00000382891	NM_133335.3	768	Cat/Tat																																																																														
TERT	0	MSKCC	GRCh37	5	1294553	1294553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	127	427	0	ENST00000310581.5:c.448G>T	p.Val150Phe	p.V150F	ENST00000310581	NM_198253.2	150	Gtt/Ttt																																																																														
STK19	0	MSKCC	GRCh37	6	31940502	31940502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	151	415	1	ENST00000375331.2:c.535G>T	p.Val179Leu	p.V179L	ENST00000375331	NM_004197.1	179	Gtg/Ttg																																																																														
CDK6	0	MSKCC	GRCh37	7	92354974	92354974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	111	219	0	ENST00000265734.4:c.503G>T	p.Arg168Leu	p.R168L	ENST00000265734	NM_001259.6	168	cGc/cTc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	315	499	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	179	384	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
AMER1	0	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	317	332	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
MGA	0	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	211	370	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																														
SPEN	0	MSKCC	GRCh37	1	16258311	16258311	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	199	476	0	ENST00000375759.3:c.5576G>T	p.Arg1859Leu	p.R1859L	ENST00000375759	NM_015001.2	1859	cGg/cTg																																																																														
FLT1	0	MSKCC	GRCh37	13	29041728	29041728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	122	369	0	ENST00000282397.4:c.91G>C	p.Asp31His	p.D31H	ENST00000282397	NM_002019.4	31	Gat/Cat																																																																														
SUZ12	0	MSKCC	GRCh37	17	30293216	30293216	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	111	353	0	ENST00000322652.5:c.505+1G>T		p.X169_splice	ENST00000322652	NM_015355.2	169																																																																															
APC	0	MSKCC	GRCh37	5	112173260	112173261	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0016565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	98	238	0	ENST00000257430.4:c.1974_1975del	p.Asn659GlnfsTer14	p.N659Qfs*14	ENST00000257430	NM_000038.5	657	AGa/a																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	70	440	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
KDM6A	7403	MSKCC	GRCh37	X	44918596	44918597	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0016568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	49	234	0	ENST00000377967.4:c.1083_1084del	p.Tyr362Ter	p.Y362*	ENST00000377967	NM_021140.2	360	aCT/a																																																																														
PMS1	0	MSKCC	GRCh37	2	190670480	190670480	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	72	329	0	ENST00000441310.2:c.418G>T	p.Gly140Cys	p.G140C	ENST00000441310	NM_000534.4	140	Ggt/Tgt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178152	56178152	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	234	392	0	ENST00000399503.3:c.3127del	p.Ser1043ProfsTer39	p.S1043Pfs*39	ENST00000399503	NM_005921.1	1042	cTt/ct																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612866	228612866	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138699472		P-0016570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	109	275	0	ENST00000366696.1:c.161G>A	p.Arg54His	p.R54H	ENST00000366696	NM_003493.2	54	cGc/cAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399783	139399783	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	150	388	0	ENST00000277541.6:c.4565A>C	p.Gln1522Pro	p.Q1522P	ENST00000277541	NM_017617.3	1522	cAg/cCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	480	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	215	361	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
ATM	0	MSKCC	GRCh37	11	108163500	108163500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	224	249	0	ENST00000278616.4:c.4591C>T	p.Gln1531Ter	p.Q1531*	ENST00000278616	NM_000051.3	1531	Cag/Tag																																																																														
NCOR1	0	MSKCC	GRCh37	17	16021243	16021243	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	100	167	0	ENST00000268712.3:c.2014C>T	p.Arg672Ter	p.R672*	ENST00000268712	NM_006311.3	672	Cga/Tga																																																																														
SOX9	0	MSKCC	GRCh37	17	70120124	70120124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	75	72	0	ENST00000245479.2:c.1126C>T	p.Gln376Ter	p.Q376*	ENST00000245479	NM_000346.3	376	Cag/Tag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153253844	153253844	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	158	230	0	ENST00000281708.4:c.889G>T	p.Glu297Ter	p.E297*	ENST00000281708	NM_033632.3	297	Gaa/Taa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485285	8485285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	95	383	0	ENST00000356435.5:c.3095C>T	p.Thr1032Ile	p.T1032I	ENST00000356435		1032	aCt/aTt																																																																														
APC	0	MSKCC	GRCh37	5	112175556	112175575	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTTCCAGATAGCCCTGGA	ATCTTCCAGATAGCCCTGGA	G			P-0016573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	78	229	0	ENST00000257430.4:c.4265_4284delinsG	p.Asp1422GlyfsTer45	p.D1422Gfs*45	ENST00000257430	NM_000038.5	1422	gATCTTCCAGATAGCCCTGGA/gG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	158	426	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	149	313	0	ENST00000342988.3:c.1609G>C	p.Asp537His	p.D537H	ENST00000342988	NM_005359.5	537	Gac/Cac																																																																														
SMYD3	0	MSKCC	GRCh37	1	246498718	246498718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	152	343	0	ENST00000388985.4:c.287G>T	p.Arg96Ile	p.R96I	ENST00000388985		96	aGa/aTa																																																																														
CTCF	0	MSKCC	GRCh37	16	67670685	67670685	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	138	430	0	ENST00000264010.4:c.1930del	p.Ala644ProfsTer42	p.A644Pfs*42	ENST00000264010	NM_006565.3	644	Gcc/cc																																																																														
STK11	0	MSKCC	GRCh37	19	1218419	1218439	+	inframe_deletion	In_Frame_Del	DEL	AATTCAACTACTGAGGAGGTT	AATTCAACTACTGAGGAGGTT	-			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	216	406	0	ENST00000326873.7:c.295_315del	p.Ile99_Leu105del	p.I99_L105del	ENST00000326873	NM_000455.4	98	gaAATTCAACTACTGAGGAGGTTa/gaa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210770	36210770	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	161	465	0	ENST00000222270.7:c.521C>G	p.Pro174Arg	p.P174R	ENST00000222270	NM_014727.1	174	cCa/cGa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71247453	71247453	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	133	308	0	ENST00000318789.4:c.80T>A	p.Leu27Gln	p.L27Q	ENST00000318789	NM_032682.5	27	cTa/cAa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162189	38162191	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	153	392	0	ENST00000317025.8:c.2525_2527del	p.Ser842del	p.S842del	ENST00000317025	NM_023034.1	842	tCCTac/tac																																																																														
SOX17	0	MSKCC	GRCh37	8	55370926	55370926	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	165	358	0	ENST00000297316.4:c.228G>C	p.Met76Ile	p.M76I	ENST00000297316	NM_022454.3	76	atG/atC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	366	496	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	352	405	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52723453	52723453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	52	336	0	ENST00000322088.6:c.1314C>A	p.Phe438Leu	p.F438L	ENST00000322088	NM_014225.5	438	ttC/ttA																																																																														
PTEN	0	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	331	319	0	ENST00000371953.3:c.801+1G>T		p.X267_splice	ENST00000371953	NM_000314.4	267																																																																															
TP53	0	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	38	386	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106497	27106498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	132	591	0	ENST00000324856.7:c.6109dup	p.Gln2037ProfsTer62	p.Q2037Pfs*62	ENST00000324856	NM_006015.4	2036	-/C																																																																														
ARID1A	0	MSKCC	GRCh37	1	27058081	27058082	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0016578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	109	353	0	ENST00000324856.7:c.1789_1790del	p.Phe597ProfsTer25	p.F597Pfs*25	ENST00000324856	NM_006015.4	597	TTc/c																																																																														
CCND1	0	MSKCC	GRCh37	11	69466022	69466022	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	80	514	0	ENST00000227507.2:c.860C>G	p.Pro287Arg	p.P287R	ENST00000227507	NM_053056.2	287	cCc/cGc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591107	67591108	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACC			P-0016578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	127	339	0	ENST00000274335.5:c.1702_1704dup	p.Pro568dup	p.P568dup	ENST00000274335		568	aaa/aaACCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	267	490	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0016579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	297	457	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12028632	12028632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	166	335	0	ENST00000353533.5:c.835G>A	p.Ala279Thr	p.A279T	ENST00000353533	NM_003010.3	279	Gca/Aca																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806657	1806657	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	134	439	0	ENST00000260795.2:c.1373A>T	p.Glu458Val	p.E458V	ENST00000260795		458	gAg/gTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974713	21974714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	193	257	0	ENST00000304494.5:c.113_114insG	p.Asn39GlnfsTer5	p.N39Qfs*5	ENST00000304494	NM_000077.4	38	ccc/ccGc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974713	21974714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	193	257	0	ENST00000304494.5:c.113_114insG	p.Asn39GlnfsTer5	p.N39Qfs*5	ENST00000304494	NM_000077.4	38	ccc/ccGc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964467	70964467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	120	399	0	ENST00000276594.2:c.1561T>C	p.Tyr521His	p.Y521H	ENST00000276594	NM_024504.3	521	Tac/Cac																																																																														
PTEN	0	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	162	396	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	261	500	1	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
CREBBP	0	MSKCC	GRCh37	16	3820744	3820744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	310	516	0	ENST00000262367.5:c.2707C>T	p.Pro903Ser	p.P903S	ENST00000262367	NM_004380.2	903	Cct/Tct																																																																														
TP53	0	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0016581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	397	384	0	ENST00000269305.4:c.993+2T>G		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67588972	67588985	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTTGGTACGAGA	TTTTTGGTACGAGA	AAAAAGC			P-0016581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	79	233	1	ENST00000274335.5:c.1063_1076delinsAAAAAGC	p.Phe355LysfsTer16	p.F355Kfs*16	ENST00000274335		355	TTTTTGGTACGAGAt/AAAAAGCt																																																																														
ESR1	0	MSKCC	GRCh37	6	152415703	152415703	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0016581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	176	316	0	ENST00000206249.3:c.1553G>C	p.Ser518Thr	p.S518T	ENST00000206249	NM_000125.3	518	aGt/aCt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	183	546	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	194	527	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RHOA	0	MSKCC	GRCh37	3	49405948	49405948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	217	681	0	ENST00000418115.1:c.190G>A	p.Glu64Lys	p.E64K	ENST00000418115	NM_001664.2	64	Gaa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105646	27105647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTC			P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	93	327	0	ENST00000324856.7:c.5259_5262dup	p.Ser1755ValfsTer2	p.S1755Vfs*2	ENST00000324856	NM_006015.4	1753	gtg/gTGTCtg																																																																														
PGR	0	MSKCC	GRCh37	11	100999574	100999574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1192	213	667	1	ENST00000325455.5:c.228C>A	p.Asp76Glu	p.D76E	ENST00000325455	NM_001202474.3	76	gaC/gaA																																																																														
FLCN	0	MSKCC	GRCh37	17	17131343	17131343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	193	525	0	ENST00000285071.4:c.109G>A	p.Asp37Asn	p.D37N	ENST00000285071	NM_144997.5	37	Gac/Aac																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469546	25469546	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	91	582	1	ENST00000264709.3:c.1222G>T	p.Glu408Ter	p.E408*	ENST00000264709	NM_175629.2	408	Gaa/Taa																																																																														
FLCN	0	MSKCC	GRCh37	17	17131350	17131358	+	missense_variant	Missense_Mutation	ONP	CCCATCCCC	CCCATCCCC	TCCATTCCT			P-0016583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	154	496	0	ENST00000285071.4:c.94_102delinsAGGAATGGA	p.Gly32_Asp33delinsArgAsn	p.G32_D33delinsRN	ENST00000285071	NM_144997.5	32	GGGGATGGG/AGGAATGGA																																																																														
MEN1	0	MSKCC	GRCh37	11	64577492	64577493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	353	473	0	ENST00000337652.1:c.89_90insC	p.Glu30AspfsTer87	p.E30Dfs*87	ENST00000337652	NM_130803.2	30	gag/gaCg																																																																														
POLE	0	MSKCC	GRCh37	12	133218351	133218351	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	463	513	0	ENST00000320574.5:c.5260A>G	p.Met1754Val	p.M1754V	ENST00000320574	NM_006231.2	1754	Atg/Gtg																																																																														
TSC2	0	MSKCC	GRCh37	16	2104350	2104350	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	562	634	0	ENST00000219476.3:c.390C>A	p.Tyr130Ter	p.Y130*	ENST00000219476	NM_000548.3	130	taC/taA																																																																														
DAXX	0	MSKCC	GRCh37	6	33287946	33287949	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0016585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	409	397	0	ENST00000374542.5:c.1304_1307del	p.Thr435MetfsTer92	p.T435Mfs*92	ENST00000374542	NM_001141970.1	435	aCAGAt/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0016593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	210	730	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922292	178922293	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	CTATGTTCGAACAGGTATCTACCATGG			P-0016593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	70	366	0	ENST00000263967.3:c.1062_1088dup	p.Tyr355_Gly363dup	p.Y355_G363dup	ENST00000263967	NM_006218.2	355	atc/atCTATGTTCGAACAGGTATCTACCATGGc																																																																														
TET2	0	MSKCC	GRCh37	4	106196544	106196544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	83	310	0	ENST00000380013.4:c.4877C>T	p.Thr1626Ile	p.T1626I	ENST00000380013	NM_001127208.2	1626	aCc/aTc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267369	198267369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	43	476	1	ENST00000335508.6:c.1988C>T	p.Thr663Ile	p.T663I	ENST00000335508	NM_012433.2	663	aCt/aTt																																																																														
TBX3	0	MSKCC	GRCh37	12	115120672	115120672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	84	678	1	ENST00000257566.3:c.334C>T	p.Leu112Phe	p.L112F	ENST00000257566	NM_016569.3	112	Ctt/Ttt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851591	134851591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	38	422	0	ENST00000398015.3:c.997G>A	p.Val333Ile	p.V333I	ENST00000398015	NM_004441.4	333	Gtc/Atc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	175	383	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	295	549	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CDK12	0	MSKCC	GRCh37	17	37673806	37673806	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201661022		P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	309	416	0	ENST00000447079.4:c.2960C>T	p.Ser987Phe	p.S987F	ENST00000447079	NM_015083.1	987	tCt/tTt																																																																														
ARID2	0	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	157	369	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435061	18435061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	245	464	0	ENST00000266497.5:c.46G>A	p.Glu16Lys	p.E16K	ENST00000266497		16	Gaa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8449788	8449788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	233	456	0	ENST00000356435.5:c.3925G>A	p.Glu1309Lys	p.E1309K	ENST00000356435		1309	Gag/Aag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18762514	18762514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	188	423	0	ENST00000266497.5:c.4010C>T	p.Ser1337Phe	p.S1337F	ENST00000266497		1337	tCc/tTc																																																																														
SPEN	0	MSKCC	GRCh37	1	16261697	16261697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	301	458	0	ENST00000375759.3:c.8962C>A	p.Pro2988Thr	p.P2988T	ENST00000375759	NM_015001.2	2988	Cct/Act																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724702	112724702	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	270	532	0	ENST00000369452.4:c.586A>G	p.Thr196Ala	p.T196A	ENST00000369452	NM_007373.3	196	Act/Gct																																																																														
MEN1	0	MSKCC	GRCh37	11	64573794	64573794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	250	342	0	ENST00000337652.1:c.974C>T	p.Pro325Leu	p.P325L	ENST00000337652	NM_130803.2	325	cCc/cTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46231108	46231108	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	174	360	0	ENST00000334344.6:c.1028T>G	p.Leu343Ter	p.L343*	ENST00000334344	NM_152641.2	343	tTa/tGa																																																																														
ARID2	0	MSKCC	GRCh37	12	46245366	46245366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	241	411	2	ENST00000334344.6:c.3460C>T	p.Pro1154Ser	p.P1154S	ENST00000334344	NM_152641.2	1154	Cca/Tca																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281939	49281940	+	missense_variant	Missense_Mutation	DNP	AG	AG	CA			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	302	537	1	ENST00000282018.3:c.986_987delinsCA	p.Lys329Thr	p.K329T	ENST00000282018	NM_020377.2	329	aAG/aCA																																																																														
TSHR	0	MSKCC	GRCh37	14	81528494	81528494	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	183	404	0	ENST00000298171.2:c.173A>C	p.Lys58Thr	p.K58T	ENST00000298171	NM_000369.2	58	aAg/aCg																																																																														
TSC2	0	MSKCC	GRCh37	16	2098633	2098633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	256	378	0	ENST00000219476.3:c.17G>A	p.Ser6Asn	p.S6N	ENST00000219476	NM_000548.3	6	aGc/aAc																																																																														
SLX4	0	MSKCC	GRCh37	16	3640980	3640980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	417	661	0	ENST00000294008.3:c.2659T>C	p.Ser887Pro	p.S887P	ENST00000294008	NM_032444.2	887	Tct/Cct																																																																														
PLCG2	0	MSKCC	GRCh37	16	81953189	81953189	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	139	273	0	ENST00000359376.3:c.2155T>G	p.Tyr719Asp	p.Y719D	ENST00000359376	NM_002661.3	719	Tac/Gac																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89357484	89357484	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	198	497	0	ENST00000301030.4:c.334T>G	p.Ser112Ala	p.S112A	ENST00000301030	NM_001256183.1	112	Tcc/Gcc																																																																														
STAT3	0	MSKCC	GRCh37	17	40500436	40500436	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	216	377	0	ENST00000264657.5:c.99T>A	p.Phe33Leu	p.F33L	ENST00000264657	NM_139276.2	33	ttT/ttA																																																																														
SF3B1	0	MSKCC	GRCh37	2	198262742	198262742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	221	398	0	ENST00000335508.6:c.3233T>C	p.Val1078Ala	p.V1078A	ENST00000335508	NM_012433.2	1078	gTc/gCc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101029	41101029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	176	337	0	ENST00000373198.4:c.1327A>G	p.Thr443Ala	p.T443A	ENST00000373198	NM_133170.3	443	Acc/Gcc																																																																														
SETD2	0	MSKCC	GRCh37	3	47205375	47205375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	271	417	0	ENST00000409792.3:c.40G>A	p.Asp14Asn	p.D14N	ENST00000409792	NM_014159.6	14	Gat/Aat																																																																														
KDR	0	MSKCC	GRCh37	4	55976826	55976826	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	267	438	0	ENST00000263923.4:c.1086A>G	p.Ile362Met	p.I362M	ENST00000263923	NM_002253.2	362	atA/atG																																																																														
TET2	0	MSKCC	GRCh37	4	106162526	106162526	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	226	335	0	ENST00000380013.4:c.3440T>A	p.Phe1147Tyr	p.F1147Y	ENST00000380013	NM_001127208.2	1147	tTt/tAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187540919	187540919	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	151	261	0	ENST00000441802.2:c.6821A>G	p.Asp2274Gly	p.D2274G	ENST00000441802	NM_005245.3	2274	gAc/gGc																																																																														
FAT1	0	MSKCC	GRCh37	4	187541237	187541237	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	196	303	0	ENST00000441802.2:c.6503T>C	p.Val2168Ala	p.V2168A	ENST00000441802	NM_005245.3	2168	gTt/gCt																																																																														
TERT	0	MSKCC	GRCh37	5	1294202	1294202	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	189	684	0	ENST00000310581.5:c.799G>C	p.Asp267His	p.D267H	ENST00000310581	NM_198253.2	267	Gac/Cac																																																																														
MSH3	0	MSKCC	GRCh37	5	80074585	80074585	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	259	492	0	ENST00000265081.6:c.2365T>G	p.Tyr789Asp	p.Y789D	ENST00000265081	NM_002439.4	789	Tac/Gac																																																																														
ARID1B	0	MSKCC	GRCh37	6	157454245	157454245	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	265	400	0	ENST00000346085.5:c.2455T>G	p.Ser819Ala	p.S819A	ENST00000346085	NM_020732.3	819	Tct/Gct																																																																														
KMT2C	0	MSKCC	GRCh37	7	151846133	151846134	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	150	318	1	ENST00000262189.6:c.12878_12879delinsTT	p.Pro4293Leu	p.P4293L	ENST00000262189	NM_170606.2	4293	cCC/cTT																																																																														
PREX2	0	MSKCC	GRCh37	8	68965427	68965427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	290	667	1	ENST00000288368.4:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000288368	NM_024870.2	347	Gaa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518360	8518360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	108	179	0	ENST00000356435.5:c.1031A>T	p.Asp344Val	p.D344V	ENST00000356435		344	gAc/gTc																																																																														
TEK	0	MSKCC	GRCh37	9	27157973	27157973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	302	489	0	ENST00000380036.4:c.197A>G	p.Asn66Ser	p.N66S	ENST00000380036	NM_000459.3	66	aAc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	595	521	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0016597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	139	322	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
RNF43	0	MSKCC	GRCh37	17	56437594	56437595	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0016597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	269	404	2	ENST00000407977.2:c.867_868delinsTA	p.Cys290Ser	p.C290S	ENST00000407977		289	tcCTgc/tcTAgc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591926	48591926	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	121	290	1	ENST00000342988.3:c.1089T>A	p.Cys363Ter	p.C363*	ENST00000342988	NM_005359.5	363	tgT/tgA																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971154	21971155	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0016597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	196	393	0	ENST00000304494.5:c.203_204delCG	p.Ala68GlyfsTer51	p.A68Gfs*51	ENST00000304494	NM_000077.4	68	gCG/g																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971154	21971155	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0016597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	196	393	0	ENST00000304494.5:c.203_204delCG	p.Ala68GlyfsTer51	p.A68Gfs*51	ENST00000304494	NM_000077.4	68	gCG/g																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971154	21971155	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0016597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	196	393	0	ENST00000304494.5:c.203_204delCG	p.Ala68GlyfsTer51	p.A68Gfs*51	ENST00000304494	NM_000077.4	68	gCG/g																																																																														
RBM10	0	MSKCC	GRCh37	X	47034426	47034427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0016597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	155	256	0	ENST00000329236.7:c.283_284dup	p.Phe96AlafsTer94	p.F96Afs*94	ENST00000329236	NM_001204466.1	94	cgg/cGGgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	87	518	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	106	582	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	74	373	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	71	418	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	209	572	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MTOR	0	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	33	352	1	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781321	3781321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200112956		P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	166	684	1	ENST00000262367.5:c.5044C>T	p.Arg1682Cys	p.R1682C	ENST00000262367	NM_004380.2	1682	Cgc/Tgc																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871800	12871800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	43	346	1	ENST00000228872.4:c.517A>G	p.Asn173Asp	p.N173D	ENST00000228872	NM_004064.3	173	Aat/Gat																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713750	30713750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	36	388	0	ENST00000359013.4:c.1150G>C	p.Ala384Pro	p.A384P	ENST00000359013	NM_001024847.2	384	Gct/Cct																																																																														
KMT2C	0	MSKCC	GRCh37	7	151836855	151836855	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	117	568	1	ENST00000262189.6:c.14365C>T	p.Arg4789Ter	p.R4789*	ENST00000262189	NM_170606.2	4789	Cga/Tga																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	65	498	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	16	469	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																																																														
LATS2	0	MSKCC	GRCh37	13	21563266	21563266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	86	629	2	ENST00000382592.4:c.653G>A	p.Gly218Glu	p.G218E	ENST00000382592	NM_014572.2	218	gGa/gAa																																																																														
STK19	0	MSKCC	GRCh37	6	31939941	31939941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	86	408	1	ENST00000375331.2:c.168G>T	p.Trp56Cys	p.W56C	ENST00000375331	NM_004197.1	56	tgG/tgT																																																																														
NTRK2	0	MSKCC	GRCh37	9	87563501	87563501	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	58	460	0	ENST00000277120.3:c.1889T>C	p.Ile630Thr	p.I630T	ENST00000277120		630	aTc/aCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0016605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	398	471	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	236	446	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603007	48603008	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GTCTT			P-0016605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	90	196	0	ENST00000342988.3:c.1309_1313dup	p.Phe438LeufsTer40	p.F438Lfs*40	ENST00000342988	NM_005359.5	436	-/GTCTT																																																																														
ABL1	0	MSKCC	GRCh37	9	133759968	133759968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	287	599	0	ENST00000318560.5:c.2291G>A	p.Arg764Gln	p.R764Q	ENST00000318560	NM_005157.4	764	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	387	505	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730916	40730916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1300	254	336	0	ENST00000373198.4:c.3619C>T	p.Arg1207Cys	p.R1207C	ENST00000373198	NM_133170.3	1207	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	58	294	0	ENST00000257430.4:c.2805C>G	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taG																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9778896	9778896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	207	376	1	ENST00000377346.4:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000377346	NM_005026.3	389	Cgt/Tgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431915	49431915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	208	556	0	ENST00000301067.7:c.9224C>T	p.Ser3075Leu	p.S3075L	ENST00000301067	NM_003482.3	3075	tCg/tTg																																																																														
MGA	0	MSKCC	GRCh37	15	42058858	42058858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	83	233	0	ENST00000219905.7:c.8578C>T	p.Arg2860Trp	p.R2860W	ENST00000219905	NM_001164273.1	2860	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112103015	112103015	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	156	340	0	ENST00000257430.4:c.350C>A	p.Ser117Ter	p.S117*	ENST00000257430	NM_000038.5	117	tCa/tAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	37	473	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0016607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1260	72	622	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
TGFBR2	0	MSKCC	GRCh37	3	30713694	30713695	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0016607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	42	276	0	ENST00000359013.4:c.1094_1095del	p.His365ArgfsTer24	p.H365Rfs*24	ENST00000359013	NM_001024847.2	365	cAT/c																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	252	638	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89624264	89624267	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0016608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	192	277	0	ENST00000371953.3:c.38_41del	p.Lys13ArgfsTer10	p.K13Rfs*10	ENST00000371953	NM_000314.4	13	aAAAGg/ag																																																																														
MET	0	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0016611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	316	603	0	ENST00000397752.3:c.3028+3A>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	739	434	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	168	610	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
FLT4	0	MSKCC	GRCh37	5	180030325	180030325	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115824945		P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	140	522	0	ENST00000261937.6:c.3959G>A	p.Arg1320Gln	p.R1320Q	ENST00000261937	NM_182925.4	1320	cGg/cAg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156838410	156838410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	105	482	0	ENST00000524377.1:c.688A>T	p.Thr230Ser	p.T230S	ENST00000524377	NM_002529.3	230	Aca/Tca																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741541	17741541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	134	391	0	ENST00000250003.3:c.212C>A	p.Pro71Gln	p.P71Q	ENST00000250003	NM_002478.4	71	cCg/cAg																																																																														
SOS1	0	MSKCC	GRCh37	2	39222294	39222294	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	121	452	0	ENST00000402219.2:c.3316G>C	p.Asp1106His	p.D1106H	ENST00000402219	NM_005633.3	1106	Gat/Cat																																																																														
PTPRT	0	MSKCC	GRCh37	20	40710652	40710652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	98	418	0	ENST00000373198.4:c.4199G>T	p.Gly1400Val	p.G1400V	ENST00000373198	NM_133170.3	1400	gGg/gTg																																																																														
MST1R	0	MSKCC	GRCh37	3	49932677	49932677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	98	621	0	ENST00000296474.3:c.3194C>T	p.Ala1065Val	p.A1065V	ENST00000296474	NM_002447.2	1065	gCg/gTg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873119	134873119	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	48	427	0	ENST00000398015.3:c.1422+1G>T		p.X474_splice	ENST00000398015	NM_004441.4	474																																																																															
CSF1R	0	MSKCC	GRCh37	5	149449459	149449459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	75	357	0	ENST00000286301.3:c.1487G>T	p.Trp496Leu	p.W496L	ENST00000286301	NM_005211.3	496	tGg/tTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55260504	55260504	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	849	454	0	ENST00000275493.2:c.2671T>G	p.Tyr891Asp	p.Y891D	ENST00000275493	NM_005228.3	891	Tat/Gat																																																																														
CDK6	0	MSKCC	GRCh37	7	92355007	92355007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	74	230	0	ENST00000265734.4:c.470G>T	p.Gly157Val	p.G157V	ENST00000265734	NM_001259.6	157	gGa/gTa																																																																														
BCOR	0	MSKCC	GRCh37	X	39933860	39933860	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	32	470	0	ENST00000378444.4:c.739del	p.Leu247CysfsTer19	p.L247Cfs*19	ENST00000378444	NM_001123385.1	247	Ctg/tg																																																																														
RBM10	0	MSKCC	GRCh37	X	47044472	47044472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	145	643	1	ENST00000329236.7:c.1735C>A	p.Arg579Ser	p.R579S	ENST00000329236	NM_001204466.1	579	Cgc/Agc																																																																														
ATRX	0	MSKCC	GRCh37	X	76764003	76764003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	111	546	2	ENST00000373344.5:c.7305C>A	p.His2435Gln	p.H2435Q	ENST00000373344	NM_000489.3	2435	caC/caA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	96	520	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
STK11	0	MSKCC	GRCh37	19	1220414	1220414	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	151	518	0	ENST00000326873.7:c.508del	p.Gln170ArgfsTer117	p.Q170Rfs*117	ENST00000326873	NM_000455.4	169	agC/ag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610511	10610511	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	115	371	0	ENST00000171111.5:c.199A>G	p.Met67Val	p.M67V	ENST00000171111	NM_203500.1	67	Atg/Gtg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132527	11132527	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	146	475	3	ENST00000344626.4:c.2743C>T	p.Gln915Ter	p.Q915*	ENST00000344626	NM_003072.3	915	Cag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141514	11141514	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	111	494	0	ENST00000344626.4:c.3491A>G	p.Asn1164Ser	p.N1164S	ENST00000344626	NM_003072.3	1164	aAc/aGc																																																																														
TGFBR1	7046	MSKCC	GRCh37	9	101911534	101911534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111426349		P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	108	411	1	ENST00000374994.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000374994	NM_004612.2	487	Cgg/Tgg																																																																														
RBM10	0	MSKCC	GRCh37	X	47028895	47028895	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	80	287	0	ENST00000329236.7:c.199G>T	p.Glu67Ter	p.E67*	ENST00000329236	NM_001204466.1	67	Gag/Tag																																																																														
RBM10	0	MSKCC	GRCh37	X	47030516	47030517	+	intron_variant	Intron	INS	-	-	CG			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	142	525	0	ENST00000329236.7:c.201+1620_201+1621dup		p.*67*	ENST00000329236	NM_001204466.1																																																																																
GATA1	0	MSKCC	GRCh37	X	48651652	48651652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	195	604	0	ENST00000376670.3:c.818C>A	p.Ala273Asp	p.A273D	ENST00000376670	NM_002049.3	273	gCc/gAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	13	335	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	145	260	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	97	305	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	158	299	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100171	157100172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	24	49	0	ENST00000346085.5:c.1114dupC	p.Arg372ProfsTer163	p.R372Pfs*163	ENST00000346085	NM_020732.3	370	tcc/tCcc																																																																														
DIS3	0	MSKCC	GRCh37	13	73346884	73346884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	56	255	2	ENST00000377767.4:c.1333del	p.Ser445HisfsTer20	p.S445Hfs*20	ENST00000377767	NM_014953.3	445	Tca/ca																																																																														
SETD2	0	MSKCC	GRCh37	3	47164856	47164856	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	58	186	1	ENST00000409792.3:c.1270C>T	p.Arg424Ter	p.R424*	ENST00000409792	NM_014159.6	424	Cga/Tga																																																																														
SMAD3	4088	MSKCC	GRCh37	15	67459125	67459125	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	139	559	1	ENST00000327367.4:c.545del	p.Pro182LeufsTer4	p.P182Lfs*4	ENST00000327367	NM_005902.3	181	Ccc/cc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15290180	15290180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	110	407	0	ENST00000263388.2:c.3455C>T	p.Thr1152Met	p.T1152M	ENST00000263388	NM_000435.2	1152	aCg/aTg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	234	280	5	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
RARA	0	MSKCC	GRCh37	17	38508182	38508184	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	101	356	2	ENST00000254066.5:c.499_501delAAG	p.Lys167del	p.K167del	ENST00000254066	NM_000964.3	164	AAG/-																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52714649	52714649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	106	371	0	ENST00000322088.6:c.407C>T	p.Ala136Val	p.A136V	ENST00000322088	NM_014225.5	136	gCg/gTg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138825	64138825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	155	436	0	ENST00000334205.4:c.2192G>A	p.Arg731Gln	p.R731Q	ENST00000334205	NM_003942.2	731	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	72	356	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100934	27100934	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	67	452	1	ENST00000324856.7:c.4220del	p.Pro1407GlnfsTer74	p.P1407Qfs*74	ENST00000324856	NM_006015.4	1406	Ccc/cc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	81	612	1	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67202148	67202148	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	84	394	2	ENST00000312629.5:c.1255del	p.Arg419GlyfsTer75	p.R419Gfs*75	ENST00000312629	NM_003952.2	417	agC/ag																																																																														
CASP8	0	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	218	370	1	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89692929	89692929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	104	493	0	ENST00000371953.3:c.413A>G	p.Tyr138Cys	p.Y138C	ENST00000371953	NM_000314.4	138	tAt/tGt																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900164	101900164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	48	206	0	ENST00000374994.4:c.598A>G	p.Thr200Ala	p.T200A	ENST00000374994	NM_004612.2	200	Aca/Gca																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45649954	45649954	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186459476		P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	75	411	2	ENST00000407780.3:c.881C>T	p.Pro294Leu	p.P294L	ENST00000407780	NM_001283052.1	294	cCg/cTg																																																																														
PREX2	0	MSKCC	GRCh37	8	68939478	68939478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139157434		P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	87	386	3	ENST00000288368.4:c.463C>T	p.Arg155Trp	p.R155W	ENST00000288368	NM_024870.2	155	Cgg/Tgg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	166	510	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
SMO	0	MSKCC	GRCh37	7	128845090	128845090	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	96	505	0	ENST00000249373.3:c.584T>C	p.Val195Ala	p.V195A	ENST00000249373	NM_005631.4	195	gTg/gCg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900268	101900270	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	64	262	0	ENST00000374994.4:c.705_707del	p.Ser236del	p.S236del	ENST00000374994	NM_004612.2	234	ttCTCc/ttc																																																																														
BCL2	0	MSKCC	GRCh37	18	60985875	60985875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	75	408	0	ENST00000333681.4:c.25T>C	p.Tyr9His	p.Y9H	ENST00000333681		9	Tac/Cac																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446040	49446040	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1064210		P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	144	759	1	ENST00000301067.7:c.1426G>A	p.Ala476Thr	p.A476T	ENST00000301067	NM_003482.3	476	Gca/Aca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106333	27106333	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201604768		P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	153	395	0	ENST00000324856.7:c.5944G>A	p.Val1982Ile	p.V1982I	ENST00000324856	NM_006015.4	1982	Gtc/Atc																																																																														
MYCL1	0	MSKCC	GRCh37	1	40363396	40363396	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	144	430	0	ENST00000397332.2:c.833A>C	p.Asp278Ala	p.D278A	ENST00000397332	NM_001033082.2	278	gAt/gCt																																																																														
MPL	0	MSKCC	GRCh37	1	43812550	43812550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	125	423	0	ENST00000372470.3:c.1253C>T	p.Ala418Val	p.A418V	ENST00000372470	NM_005373.2	418	gCc/gTc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156834205	156834205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	124	489	0	ENST00000524377.1:c.272G>A	p.Gly91Glu	p.G91E	ENST00000524377	NM_002529.3	91	gGg/gAg																																																																														
TET1	0	MSKCC	GRCh37	10	70446279	70446279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	98	470	0	ENST00000373644.4:c.5219G>A	p.Arg1740His	p.R1740H	ENST00000373644	NM_030625.2	1740	cGc/cAc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118392634	118392634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	66	246	1	ENST00000534358.1:c.11666G>A	p.Arg3889Gln	p.R3889Q	ENST00000534358	NM_005933.3	3889	cGa/cAa																																																																														
ARID2	0	MSKCC	GRCh37	12	46215214	46215214	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	19	253	1	ENST00000334344.6:c.652del	p.Ser218ProfsTer74	p.S218Pfs*74	ENST00000334344	NM_152641.2	217	Ttt/tt																																																																														
ARID2	0	MSKCC	GRCh37	12	46244967	46244967	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	104	474	0	ENST00000334344.6:c.3065delC	p.Pro1022HisfsTer38	p.P1022Hfs*38	ENST00000334344	NM_152641.2	1021	Ccc/cc																																																																														
ARID2	0	MSKCC	GRCh37	12	46285703	46285703	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	30	224	0	ENST00000334344.6:c.5061+2T>C		p.X1687_splice	ENST00000334344	NM_152641.2	1687																																																																															
KMT2D	0	MSKCC	GRCh37	12	49444236	49444238	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	129	644	0	ENST00000301067.7:c.3133_3135del	p.Pro1045del	p.P1045del	ENST00000301067	NM_003482.3	1045	CCT/-																																																																														
POLE	0	MSKCC	GRCh37	12	133219531	133219531	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138564205		P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	79	328	0	ENST00000320574.5:c.4603G>A	p.Gly1535Ser	p.G1535S	ENST00000320574	NM_006231.2	1535	Ggc/Agc																																																																														
DICER1	0	MSKCC	GRCh37	14	95569717	95569717	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	35	136	0	ENST00000343455.3:c.4016A>G	p.His1339Arg	p.H1339R	ENST00000343455	NM_177438.2	1339	cAt/cGt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473602	67473602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	73	392	3	ENST00000327367.4:c.682G>A	p.Glu228Lys	p.E228K	ENST00000327367	NM_005902.3	228	Gag/Aag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831092	72831092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	47	197	0	ENST00000268489.5:c.5489G>A	p.Gly1830Asp	p.G1830D	ENST00000268489	NM_006885.3	1830	gGc/gAc																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89350772	89350775	+	frameshift_variant	Frame_Shift_Del	DEL	TTTG	TTTG	-	rs886039734		P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	112	567	0	ENST00000301030.4:c.2175_2178del	p.Asn725LysfsTer23	p.N725Kfs*23	ENST00000301030	NM_001256183.1	725	aaCAAA/aa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41256182	41256182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	92	494	0	ENST00000357654.3:c.398G>A	p.Arg133His	p.R133H	ENST00000357654	NM_007294.3	133	cGt/cAt																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39618774	39618774	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	78	262	0	ENST00000262039.4:c.1998A>T	p.Lys666Asn	p.K666N	ENST00000262039	NM_002647.2	666	aaA/aaT																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604769	48604769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	113	373	2	ENST00000342988.3:c.1591C>T	p.Arg531Trp	p.R531W	ENST00000342988	NM_005359.5	531	Cgg/Tgg																																																																														
AXL	0	MSKCC	GRCh37	19	41765501	41765501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	110	449	0	ENST00000301178.4:c.2377C>T	p.Arg793Trp	p.R793W	ENST00000301178	NM_021913.4	793	Cgg/Tgg																																																																														
POLD1	0	MSKCC	GRCh37	19	50912095	50912095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	101	610	0	ENST00000440232.2:c.1829T>C	p.Ile610Thr	p.I610T	ENST00000440232	NM_002691.3	610	aTc/aCc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99181228	99181228	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	32	207	0	ENST00000074304.5:c.2167+2T>C		p.X723_splice	ENST00000074304	NM_001134224.1	723																																																																															
CUL3	0	MSKCC	GRCh37	2	225367761	225367761	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	72	266	0	ENST00000264414.4:c.1406A>G	p.Lys469Arg	p.K469R	ENST00000264414	NM_003590.4	469	aAa/aGa																																																																														
NF2	0	MSKCC	GRCh37	22	30069387	30069387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	73	361	0	ENST00000338641.4:c.1252C>T	p.Arg418Cys	p.R418C	ENST00000338641	NM_000268.3	418	Cgc/Tgc																																																																														
GATA2	0	MSKCC	GRCh37	3	128200113	128200113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	61	515	0	ENST00000341105.2:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000341105	NM_032638.4	398	Cgg/Tgg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807396	1807396	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	77	387	2	ENST00000260795.2:c.1645G>A	p.Gly549Arg	p.G549R	ENST00000260795		549	Ggg/Agg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66535375	66535375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	75	458	3	ENST00000273854.3:c.86C>T	p.Ala29Val	p.A29V	ENST00000273854	NM_004439.5	29	gCc/gTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187542581	187542581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	89	397	0	ENST00000441802.2:c.5159T>C	p.Ile1720Thr	p.I1720T	ENST00000441802	NM_005245.3	1720	aTc/aCc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67590478	67590478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	81	266	1	ENST00000274335.5:c.1540C>T	p.Arg514Cys	p.R514C	ENST00000274335		514	Cgt/Tgt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449492	149449492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	68	356	0	ENST00000286301.3:c.1454G>A	p.Cys485Tyr	p.C485Y	ENST00000286301	NM_005211.3	485	tGc/tAc																																																																														
IRF4	0	MSKCC	GRCh37	6	397186	397186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	45	330	0	ENST00000380956.4:c.571C>T	p.Pro191Ser	p.P191S	ENST00000380956	NM_001195286.1	191	Ccg/Tcg																																																																														
ROS1	0	MSKCC	GRCh37	6	117709122	117709122	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	83	399	0	ENST00000368508.3:c.1835T>C	p.Val612Ala	p.V612A	ENST00000368508	NM_002944.2	612	gTg/gCg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528735	157528735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	72	334	0	ENST00000346085.5:c.6460G>A	p.Gly2154Arg	p.G2154R	ENST00000346085	NM_020732.3	2154	Gga/Aga																																																																														
CARD11	0	MSKCC	GRCh37	7	2983910	2983910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	86	497	0	ENST00000396946.4:c.620G>A	p.Arg207His	p.R207H	ENST00000396946	NM_032415.4	207	cGc/cAc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162868	38162868	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201879366		P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	183	539	1	ENST00000317025.8:c.2338C>T	p.Arg780Cys	p.R780C	ENST00000317025	NM_023034.1	780	Cgc/Tgc																																																																														
RAD21	0	MSKCC	GRCh37	8	117862878	117862878	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	113	452	0	ENST00000297338.2:c.1599del	p.Glu534LysfsTer78	p.E534Kfs*78	ENST00000297338	NM_006265.2	533	aaA/aa																																																																														
TEK	0	MSKCC	GRCh37	9	27197438	27197439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	99	568	1	ENST00000380036.4:c.1756dup	p.Ser586LysfsTer2	p.S586Kfs*2	ENST00000380036	NM_000459.3	584	caa/cAaa																																																																														
PPP6C	0	MSKCC	GRCh37	9	127916227	127916227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	76	425	1	ENST00000373547.4:c.417G>A	p.Trp139Ter	p.W139*	ENST00000373547	NM_002721.4	139	tgG/tgA																																																																														
ABL1	0	MSKCC	GRCh37	9	133759890	133759890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	70	479	0	ENST00000318560.5:c.2213G>T	p.Arg738Leu	p.R738L	ENST00000318560	NM_005157.4	738	cGg/cTg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44937722	44937722	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	47	434	0	ENST00000377967.4:c.2910A>G	p.Ile970Met	p.I970M	ENST00000377967	NM_021140.2	970	atA/atG																																																																														
RBM10	0	MSKCC	GRCh37	X	47006864	47006864	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	147	473	0	ENST00000329236.7:c.-17G>A		p.*6*	ENST00000329236	NM_001204466.1																																																																																
AR	0	MSKCC	GRCh37	X	66765613	66765613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	112	608	2	ENST00000374690.3:c.625G>A	p.Gly209Arg	p.G209R	ENST00000374690	NM_000044.3	209	Ggg/Agg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860891	151860894	+	frameshift_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0016617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	151	279	0	ENST00000262189.6:c.9768_9771del	p.Lys3256AsnfsTer5	p.K3256Nfs*5	ENST00000262189	NM_170606.2	3256	aaAGAA/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1340	50	713	1	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0016620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	79	331	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	18	712	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0016622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	192	458	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0016622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	243	674	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0016622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	480	742	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	668	921	1	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	184	599	3	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916948	178916950	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0016622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	311	560	0	ENST00000263967.3:c.337_339delCTC	p.Leu113del	p.L113del	ENST00000263967	NM_006218.2	112	aTCCtc/atc																																																																														
PTEN	0	MSKCC	GRCh37	10	89653809	89653809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	286	421	0	ENST00000371953.3:c.107G>T	p.Gly36Val	p.G36V	ENST00000371953	NM_000314.4	36	gGa/gTa																																																																														
GLI1	0	MSKCC	GRCh37	12	57864432	57864432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	208	604	1	ENST00000228682.2:c.1909C>T	p.Arg637Trp	p.R637W	ENST00000228682	NM_005269.2	637	Cgg/Tgg																																																																														
CIC	0	MSKCC	GRCh37	19	42799116	42799116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1563	439	1188	0	ENST00000575354.2:c.4600C>T	p.Pro1534Ser	p.P1534S	ENST00000575354	NM_015125.3	1534	Cct/Tct																																																																														
RAD50	0	MSKCC	GRCh37	5	131976370	131976370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	146	482	0	ENST00000265335.6:c.3625G>A	p.Ala1209Thr	p.A1209T	ENST00000265335		1209	Gcc/Acc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692830	89692830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	58	227	0	ENST00000371953.3:c.314G>T	p.Cys105Phe	p.C105F	ENST00000371953	NM_000314.4	105	tGt/tTt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	93	353	1	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11096052	11096052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1239	115	925	1	ENST00000344626.4:c.326C>T	p.Pro109Leu	p.P109L	ENST00000344626	NM_003072.3	109	cCg/cTg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42861337	42861455	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCTCCAGAGGTCTCAATAGCCCAGAGAGCAGGGTCTGGCTCAGAGCACTGGGGACTGCAGGAGCACATGGTGGGATCGAGGCTCCCTGCACTTACTGAACTTCCAGAGTAGGCCAGC	GGCCTCCAGAGGTCTCAATAGCCCAGAGAGCAGGGTCTGGCTCAGAGCACTGGGGACTGCAGGAGCACATGGTGGGATCGAGGCTCCCTGCACTTACTGAACTTCCAGAGTAGGCCAGC	-			P-0016625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	12	72	0	ENST00000398585.3:c.415_436+97del		p.X139_splice	ENST00000398585	NM_001135099.1	139																																																																															
HIST1H3G	0	MSKCC	GRCh37	6	26271490	26271492	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	CGA			P-0016625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	40	227	0	ENST00000305910.3:c.121_123delinsTCG	p.Arg41Ser	p.R41S	ENST00000305910	NM_003534.2	41	CGC/TCG																																																																														
KIT	0	MSKCC	GRCh37	4	55593613	55593613	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	334	472	0	ENST00000288135.5:c.1679T>A	p.Val560Asp	p.V560D	ENST00000288135	NM_000222.2	560	gTt/gAt																																																																														
RAF1	0	MSKCC	GRCh37	3	12641753	12641753	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	300	495	0	ENST00000251849.4:c.888C>G	p.Ser296Arg	p.S296R	ENST00000251849	NM_002880.3	296	agC/agG																																																																														
FBXW7	0	MSKCC	GRCh37	4	153271263	153271263	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	16	356	0	ENST00000281708.4:c.515T>A	p.Leu172Ter	p.L172*	ENST00000281708	NM_033632.3	172	tTg/tAg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332538	153332539	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0016629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	54	367	0	ENST00000281708.4:c.417_418insTA	p.Thr140Ter	p.T140*	ENST00000281708	NM_033632.3	139	-/TA																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	232	475	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62321690	62321690	+	missense_variant,NMD_transcript_variant	Missense_Mutation	SNP	G	G	T			P-0016632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	118	479	1	ENST00000482936.1:c.2309G>T	p.Gly770Val	p.G770V	ENST00000482936		770	gGa/gTa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8449764	8449764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	258	420	0	ENST00000356435.5:c.3949G>T	p.Asp1317Tyr	p.D1317Y	ENST00000356435		1317	Gac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	183	402	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67198888	67198888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	181	442	0	ENST00000312629.5:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000312629	NM_003952.2	120	cGg/cAg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12043203	12043203	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0016636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	140	290	0	ENST00000353533.5:c.1086+2T>C		p.X362_splice	ENST00000353533	NM_003010.3	362																																																																															
NCOR1	0	MSKCC	GRCh37	17	16046917	16046917	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	A			P-0016636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	160	345	0	ENST00000268712.3:c.1173+3A>T		p.X391_splice	ENST00000268712	NM_006311.3	391																																																																															
ALK	0	MSKCC	GRCh37	2	29498333	29498333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	104	528	0	ENST00000389048.3:c.1847G>T	p.Gly616Val	p.G616V	ENST00000389048	NM_004304.4	616	gGa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579437	7579437	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	126	684	0	ENST00000269305.4:c.250del	p.Ala84ProfsTer39	p.A84Pfs*39	ENST00000269305	NM_001126112.2	84	Gcc/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	210	930	2	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	202	810	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18691093	18691093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	138	440	0	ENST00000266497.5:c.3204C>A	p.Asp1068Glu	p.D1068E	ENST00000266497		1068	gaC/gaA																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420273	49420273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	85	794	0	ENST00000301067.7:c.15476G>A	p.Arg5159Gln	p.R5159Q	ENST00000301067	NM_003482.3	5159	cGg/cAg																																																																														
SUZ12	0	MSKCC	GRCh37	17	30320958	30320958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1247	296	808	0	ENST00000322652.5:c.1368C>A	p.Asn456Lys	p.N456K	ENST00000322652	NM_015355.2	456	aaC/aaA																																																																														
CDK12	0	MSKCC	GRCh37	17	37687049	37687049	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs151051059		P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	64	582	0	ENST00000447079.4:c.3953A>G	p.His1318Arg	p.H1318R	ENST00000447079	NM_015083.1	1318	cAt/cGt																																																																														
SOX9	0	MSKCC	GRCh37	17	70120373	70120373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1648	259	1717	0	ENST00000245479.2:c.1375G>T	p.Gly459Cys	p.G459C	ENST00000245479	NM_000346.3	459	Ggc/Tgc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599929	10599931	+	inframe_deletion	In_Frame_Del	DEL	GGG	GGG	-			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	277	935	0	ENST00000171111.5:c.1645_1647del	p.Pro549del	p.P549del	ENST00000171111	NM_203500.1	549	CCC/-																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509361	106509361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	228	592	0	ENST00000359195.3:c.1355C>A	p.Ser452Tyr	p.S452Y	ENST00000359195	NM_002649.2	452	tCt/tAt																																																																														
AMER1	0	MSKCC	GRCh37	X	63411325	63411325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	183	788	0	ENST00000330258.3:c.1842C>A	p.His614Gln	p.H614Q	ENST00000330258	NM_152424.3	614	caC/caA																																																																														
ATRX	0	MSKCC	GRCh37	X	76937930	76937930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	215	692	0	ENST00000373344.5:c.2818G>T	p.Ala940Ser	p.A940S	ENST00000373344	NM_000489.3	940	Gct/Tct																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	364	348	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CBFB	0	MSKCC	GRCh37	16	67100585	67100585	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	289	200	0	ENST00000412916.2:c.283G>T	p.Val95Leu	p.V95L	ENST00000412916		95	Gta/Tta																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7980034	7980034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	440	412	0	ENST00000319144.4:c.1303G>A	p.Val435Ile	p.V435I	ENST00000319144	NM_001139.2	435	Gtc/Atc																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	394	364	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
SPEN	0	MSKCC	GRCh37	1	16256412	16256416	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	517	482	0	ENST00000375759.3:c.3682_3686del	p.Lys1228AspfsTer7	p.K1228Dfs*7	ENST00000375759	NM_015001.2	1226	aAAAAG/a																																																																														
SPEN	0	MSKCC	GRCh37	1	16261081	16261082	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	381	352	0	ENST00000375759.3:c.8347dup	p.Ser2783LysfsTer30	p.S2783Kfs*30	ENST00000375759	NM_015001.2	2782	-/A																																																																														
MPL	0	MSKCC	GRCh37	1	43804287	43804287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	431	377	0	ENST00000372470.3:c.287C>T	p.Pro96Leu	p.P96L	ENST00000372470	NM_005373.2	96	cCa/cTa																																																																														
CDK8	0	MSKCC	GRCh37	13	26959446	26959448	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0016638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	339	361	0	ENST00000381527.3:c.616_618del	p.Leu206del	p.L206del	ENST00000381527	NM_001260.1	205	CTT/-																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	301	572	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
IDH2	0	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	171	446	0	ENST00000330062.3:c.514A>T	p.Arg172Trp	p.R172W	ENST00000330062	NM_002168.2	172	Agg/Tgg																																																																														
ARID2	0	MSKCC	GRCh37	12	46246170	46246170	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	156	351	0	ENST00000334344.6:c.4264A>C	p.Thr1422Pro	p.T1422P	ENST00000334344	NM_152641.2	1422	Act/Cct																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210659	2210659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200547302		P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	308	746	0	ENST00000398665.3:c.1156G>A	p.Val386Met	p.V386M	ENST00000398665	NM_032482.2	386	Gtg/Atg																																																																														
APC	0	MSKCC	GRCh37	5	112175842	112175842	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	98	259	0	ENST00000257430.4:c.4551del	p.Asp1519MetfsTer4	p.D1519Mfs*4	ENST00000257430	NM_000038.5	1517	caG/ca																																																																														
APC	0	MSKCC	GRCh37	5	112175865	112175896	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCTCCAGTTCAGGAAAATGACAATGGGAAT	TGCCTCCAGTTCAGGAAAATGACAATGGGAAT	-			P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	84	284	0	ENST00000257430.4:c.4574_4605del	p.Met1525ArgfsTer8	p.M1525Rfs*8	ENST00000257430	NM_000038.5	1525	aTGCCTCCAGTTCAGGAAAATGACAATGGGAAT/a																																																																														
EGFR	0	MSKCC	GRCh37	7	55209982	55209982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	141	320	0	ENST00000275493.2:c.92G>A	p.Cys31Tyr	p.C31Y	ENST00000275493	NM_005228.3	31	tGc/tAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1417	426	500	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MST1	0	MSKCC	GRCh37	3	49722761	49722761	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs62262682		P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	16	22	0	ENST00000449682.2:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000449682	NM_020998.3	493	cGt/cTt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120471614	120471614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	145	260	0	ENST00000256646.2:c.3877C>T	p.Arg1293Cys	p.R1293C	ENST00000256646	NM_024408.3	1293	Cgt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108124621	108124621	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	278	422	0	ENST00000278616.4:c.1979T>C	p.Met660Thr	p.M660T	ENST00000278616	NM_000051.3	660	aTg/aCg																																																																														
ATM	0	MSKCC	GRCh37	11	108190718	108190718	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	283	532	0	ENST00000278616.4:c.6385T>A	p.Tyr2129Asn	p.Y2129N	ENST00000278616	NM_000051.3	2129	Tac/Aac																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554270	63554270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	541	437	0	ENST00000307078.5:c.469A>G	p.Ile157Val	p.I157V	ENST00000307078	NM_004655.3	157	Ata/Gta																																																																														
STK11	0	MSKCC	GRCh37	19	1221309	1221310	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	629	524	0	ENST00000326873.7:c.834_835delTG	p.Cys278TrpfsTer6	p.C278Wfs*6	ENST00000326873	NM_000455.4	278	TGt/t																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521667	89521667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	268	416	0	ENST00000336596.2:c.2744C>A	p.Thr915Lys	p.T915K	ENST00000336596	NM_005233.5	915	aCa/aAa																																																																														
AMER1	0	MSKCC	GRCh37	X	63409851	63409851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	136	240	0	ENST00000330258.3:c.3316A>G	p.Ser1106Gly	p.S1106G	ENST00000330258	NM_152424.3	1106	Agc/Ggc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546988	9546988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	187	169	0	ENST00000353224.5:c.1034C>T	p.Ser345Leu	p.S345L	ENST00000353224	NM_177990.2	345	tCa/tTa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097608	27097608	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	634	526	0	ENST00000324856.7:c.3199-2A>T		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																																																															
AKT3	0	MSKCC	GRCh37	1	243736274	243736274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	567	487	0	ENST00000263826.5:c.773C>A	p.Ala258Asp	p.A258D	ENST00000263826	NM_005465.4	258	gCc/gAc																																																																														
SUFU	0	MSKCC	GRCh37	10	104268976	104268976	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	657	515	0	ENST00000369902.3:c.233G>T	p.Gly78Val	p.G78V	ENST00000369902	NM_016169.3	78	gGg/gTg																																																																														
MGA	0	MSKCC	GRCh37	15	42041308	42041308	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	425	385	0	ENST00000219905.7:c.5504-1G>T		p.X1835_splice	ENST00000219905	NM_001164273.1	1835																																																																															
CREBBP	0	MSKCC	GRCh37	16	3778017	3778017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1407	871	926	0	ENST00000262367.5:c.7031G>T	p.Arg2344Leu	p.R2344L	ENST00000262367	NM_004380.2	2344	cGg/cTg																																																																														
CYLD	0	MSKCC	GRCh37	16	50810138	50810138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	551	526	0	ENST00000398568.2:c.962G>T	p.Arg321Ile	p.R321I	ENST00000398568	NM_001042412.1	321	aGa/aTa																																																																														
NF1	0	MSKCC	GRCh37	17	29528145	29528146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	710	640	0	ENST00000358273.4:c.1153_1154insT	p.Arg385LeufsTer11	p.R385Lfs*11	ENST00000358273	NM_001042492.2	385	cgt/cTgt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15311601	15311601	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	259	67	0	ENST00000263388.2:c.116C>T	p.Ala39Val	p.A39V	ENST00000263388	NM_000435.2	39	gCa/gTa																																																																														
GATA2	0	MSKCC	GRCh37	3	128199900	128199900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	270	180	0	ENST00000341105.2:c.1405C>A	p.His469Asn	p.H469N	ENST00000341105	NM_032638.4	469	Cac/Aac																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356195	66356195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	507	386	0	ENST00000273854.3:c.1302C>A	p.His434Gln	p.H434Q	ENST00000273854	NM_004439.5	434	caC/caA																																																																														
RASA1	0	MSKCC	GRCh37	5	86564739	86564739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	331	548	0	ENST00000274376.6:c.471C>G	p.Asp157Glu	p.D157E	ENST00000274376	NM_002890.2	157	gaC/gaG																																																																														
RASA1	0	MSKCC	GRCh37	5	86676400	86676400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	137	204	0	ENST00000274376.6:c.2678del	p.Thr893LysfsTer18	p.T893Kfs*18	ENST00000274376	NM_002890.2	893	aCa/aa																																																																														
MDC1	0	MSKCC	GRCh37	6	30671684	30671684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	476	361	1	ENST00000376406.3:c.5276G>A	p.Gly1759Glu	p.G1759E	ENST00000376406	NM_014641.2	1759	gGa/gAa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967854	93967854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	302	550	0	ENST00000369303.4:c.2073C>A	p.His691Gln	p.H691Q	ENST00000369303	NM_004440.3	691	caC/caA																																																																														
EGFR	0	MSKCC	GRCh37	7	55224349	55224349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	595	348	0	ENST00000275493.2:c.1130G>T	p.Arg377Met	p.R377M	ENST00000275493	NM_005228.3	377	aGg/aTg																																																																														
SOX17	0	MSKCC	GRCh37	8	55372332	55372332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2654	446	802	0	ENST00000297316.4:c.1022C>A	p.Pro341His	p.P341H	ENST00000297316	NM_022454.3	341	cCc/cAc																																																																														
NBN	0	MSKCC	GRCh37	8	90970980	90970980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	651	231	0	ENST00000265433.3:c.1097A>G	p.Asp366Gly	p.D366G	ENST00000265433	NM_002485.4	366	gAc/gGc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87635173	87635173	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	199	338	0	ENST00000277120.3:c.2225T>A	p.Met742Lys	p.M742K	ENST00000277120		742	aTg/aAg																																																																														
KLF4	0	MSKCC	GRCh37	9	110250422	110250422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	603	560	0	ENST00000374672.4:c.253G>T	p.Gly85Cys	p.G85C	ENST00000374672	NM_004235.4	85	Ggt/Tgt																																																																														
ATRX	0	MSKCC	GRCh37	X	76938566	76938566	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	206	420	0	ENST00000373344.5:c.2182A>T	p.Asn728Tyr	p.N728Y	ENST00000373344	NM_000489.3	728	Aat/Tat																																																																														
CENPA	0	MSKCC	GRCh37	2	27009101	27009102	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0016643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	286	258	0	ENST00000335756.4:c.37_38delinsT	p.Pro13Ter	p.P13*	ENST00000335756	NM_001809.3	13	CCg/Tg																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	25	476	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602757	10602757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	352	795	0	ENST00000171111.5:c.821A>G	p.His274Arg	p.H274R	ENST00000171111	NM_203500.1	274	cAc/cGc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937145	36937145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	92	604	0	ENST00000361632.4:c.1174G>C	p.Glu392Gln	p.E392Q	ENST00000361632		392	Gag/Cag																																																																														
CSF3R	0	MSKCC	GRCh37	1	36938243	36938243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	111	615	2	ENST00000361632.4:c.718G>A	p.Glu240Lys	p.E240K	ENST00000361632		240	Gaa/Aaa																																																																														
PGR	0	MSKCC	GRCh37	11	100999787	100999787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	231	603	0	ENST00000325455.5:c.15G>T	p.Lys5Asn	p.K5N	ENST00000325455	NM_001202474.3	5	aaG/aaT																																																																														
MGA	0	MSKCC	GRCh37	15	41989162	41989162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	133	605	0	ENST00000219905.7:c.1954G>A	p.Asp652Asn	p.D652N	ENST00000219905	NM_001164273.1	652	Gat/Aat																																																																														
TRAF7	0	MSKCC	GRCh37	16	2223403	2223403	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	60	543	0	ENST00000326181.6:c.1012+3G>C		p.X338_splice	ENST00000326181	NM_032271.2	338																																																																															
NF1	0	MSKCC	GRCh37	17	29586096	29586096	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	76	509	0	ENST00000358273.4:c.4379A>C	p.His1460Pro	p.H1460P	ENST00000358273	NM_001042492.2	1460	cAt/cCt																																																																														
STK11	0	MSKCC	GRCh37	19	1219349	1219349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	262	668	1	ENST00000326873.7:c.401del	p.Cys134LeufsTer27	p.C134Lfs*27	ENST00000326873	NM_000455.4	134	tGt/tt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52676029	52676029	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1527	94	728	0	ENST00000394830.3:c.1028C>G	p.Ser343Ter	p.S343*	ENST00000394830	NM_018313.4	343	tCa/tGa																																																																														
TERT	0	MSKCC	GRCh37	5	1293946	1293946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2054	593	1382	2	ENST00000310581.5:c.1055C>A	p.Pro352His	p.P352H	ENST00000310581	NM_198253.2	352	cCc/cAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	120	636	1	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
SOX17	0	MSKCC	GRCh37	8	55372238	55372238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	91	612	1	ENST00000297316.4:c.928G>A	p.Gly310Ser	p.G310S	ENST00000297316	NM_022454.3	310	Ggc/Agc																																																																														
LATS2	0	MSKCC	GRCh37	13	21563093	21563093	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	131	856	1	ENST00000382592.4:c.826C>T	p.Gln276Ter	p.Q276*	ENST00000382592	NM_014572.2	276	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	266	606	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	139	454	0				ENST00000310581	NM_198253.2																																																																																
GATA3	0	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0016655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	104	287	0	ENST00000346208.3:c.1299_1300dupCC	p.His434ProfsTer42	p.H434Pfs*42	ENST00000346208		433	cac/caCCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0016656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	68	252	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
CDH1	0	MSKCC	GRCh37	16	68772210	68772210	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	170	687	0	ENST00000261769.5:c.59G>A	p.Trp20Ter	p.W20*	ENST00000261769	NM_004360.3	20	tGg/tAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0016656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	10	57	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																																																														
TBX3	0	MSKCC	GRCh37	12	115118815	115118816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	126	346	1	ENST00000257566.3:c.525_526insT	p.Ala176CysfsTer51	p.A176Cfs*51	ENST00000257566	NM_016569.3	175	-/T																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	43	591	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	43	591	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	43	591	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
STK40	0	MSKCC	GRCh37	1	36824360	36824360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	77	465	2	ENST00000373129.3:c.176C>T	p.Thr59Met	p.T59M	ENST00000373129	NM_032017.1	59	aCg/aTg																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138202276	138202276	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	39	503	0	ENST00000237289.4:c.2193G>T	p.Glu731Asp	p.E731D	ENST00000237289	NM_001270507.1	731	gaG/gaT																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1245	143	904	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	272	557	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
AGO2	0	MSKCC	GRCh37	8	141561492	141561492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1620	141	443	0	ENST00000220592.5:c.1313G>A	p.Arg438Gln	p.R438Q	ENST00000220592	NM_012154.3	438	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	77	792	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0016685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	99	737	1	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
ATM	0	MSKCC	GRCh37	11	108155027	108155027	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	47	612	0	ENST00000278616.4:c.3820C>T	p.Gln1274Ter	p.Q1274*	ENST00000278616	NM_000051.3	1274	Cag/Tag																																																																														
FLT3	0	MSKCC	GRCh37	13	28597486	28597486	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	77	696	0	ENST00000241453.7:c.2418+1G>T		p.X806_splice	ENST00000241453	NM_004119.2	806																																																																															
EPHA5	2044	MSKCC	GRCh37	4	66356361	66356361	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772108237		P-0016685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	63	586	0	ENST00000273854.3:c.1136C>T	p.Pro379Leu	p.P379L	ENST00000273854	NM_004439.5	379	cCg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	177	552	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	258	853	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	167	1033	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458085	120458086	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0016686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	50	422	0	ENST00000256646.2:c.7259_7260delAG	p.Glu2420ValfsTer3	p.E2420Vfs*3	ENST00000256646	NM_024408.3	2420	gAG/g																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38060782	38060784	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0016686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	84	1188	1	ENST00000250448.2:c.1205_1207del	p.Ile402del	p.I402del	ENST00000250448	NM_004496.3	402	aTCAac/aac																																																																														
AXIN1	0	MSKCC	GRCh37	16	354375	354375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	104	728	1	ENST00000262320.3:c.1183C>T	p.Arg395Cys	p.R395C	ENST00000262320	NM_003502.3	395	Cgc/Tgc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779598	3779598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	148	934	0	ENST00000262367.5:c.5450C>T	p.Pro1817Leu	p.P1817L	ENST00000262367	NM_004380.2	1817	cCg/cTg																																																																														
ATR	0	MSKCC	GRCh37	3	142285047	142285047	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	46	650	0	ENST00000350721.4:c.208G>C	p.Asp70His	p.D70H	ENST00000350721	NM_001184.3	70	Gat/Cat																																																																														
PLK2	0	MSKCC	GRCh37	5	57751896	57751896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	54	611	0	ENST00000274289.3:c.1341G>A	p.Met447Ile	p.M447I	ENST00000274289	NM_006622.3	447	atG/atA																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540162	23540162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	23	490	0	ENST00000380871.4:c.241C>T	p.Arg81Cys	p.R81C	ENST00000380871	NM_006167.3	81	Cgc/Tgc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016689-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	18	476	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG																																																																														
PTEN	0	MSKCC	GRCh37	10	89692816	89692817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016689-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			193	377	509	0	ENST00000371953.3:c.301dup	p.Ile101AsnfsTer6	p.I101Nfs*6	ENST00000371953	NM_000314.4	100	-/A																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871244	35871244	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016689-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	246	703	0	ENST00000216797.5:c.929T>G	p.Phe310Cys	p.F310C	ENST00000216797	NM_020529.2	310	tTt/tGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68844099	68844099	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016689-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			192	172	618	0	ENST00000261769.5:c.688-1G>A		p.X230_splice	ENST00000261769	NM_004360.3	230																																																																															
NOTCH1	0	MSKCC	GRCh37	9	139402786	139402786	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016689-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	334	1061	1	ENST00000277541.6:c.3223T>A	p.Trp1075Arg	p.W1075R	ENST00000277541	NM_017617.3	1075	Tgg/Agg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	216	791	1	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
POLE	0	MSKCC	GRCh37	12	133209090	133209090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	98	341	0	ENST00000320574.5:c.6141G>C	p.Met2047Ile	p.M2047I	ENST00000320574	NM_006231.2	2047	atG/atC																																																																														
SMO	0	MSKCC	GRCh37	7	128845547	128845547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	165	700	0	ENST00000249373.3:c.844C>A	p.Leu282Met	p.L282M	ENST00000249373	NM_005631.4	282	Ctg/Atg																																																																														
MGA	0	MSKCC	GRCh37	15	42032374	42032374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	63	597	0	ENST00000219905.7:c.4558G>C	p.Ala1520Pro	p.A1520P	ENST00000219905	NM_001164273.1	1520	Gcg/Ccg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88671966	88671966	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	96	804	0	ENST00000360948.2:c.1205-1G>A		p.X402_splice	ENST00000360948	NM_001012338.2	402																																																																															
TP53	0	MSKCC	GRCh37	17	7577148	7577163	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATTACCACTACTCAG	GATTACCACTACTCAG	-			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	273	868	0	ENST00000269305.4:c.783-8_790del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NF1	0	MSKCC	GRCh37	17	29541477	29541478	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	103	363	0	ENST00000358273.4:c.1401_1402del	p.Phe468Ter	p.F468*	ENST00000358273	NM_001042492.2	467	acATtt/actt																																																																														
IRS1	0	MSKCC	GRCh37	2	227660678	227660678	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	271	743	0	ENST00000305123.5:c.2777A>G	p.Gln926Arg	p.Q926R	ENST00000305123	NM_005544.2	926	cAg/cGg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52610644	52610647	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	178	685	0	ENST00000394830.3:c.3526_3529del	p.Glu1176GlnfsTer16	p.E1176Qfs*16	ENST00000394830	NM_018313.4	1176	GAAAca/ca																																																																														
HGF	0	MSKCC	GRCh37	7	81335615	81335615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	168	641	1	ENST00000222390.5:c.1745T>A	p.Met582Lys	p.M582K	ENST00000222390	NM_000601.4	582	aTg/aAg																																																																														
RBM10	0	MSKCC	GRCh37	X	47038858	47038894	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAGGGCTCGGAGCCAAGCTCAGAGAACGCCAATGACA	CAGGGCTCGGAGCCAAGCTCAGAGAACGCCAATGACA	ATGATG			P-0016690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	56	495	0	ENST00000329236.7:c.634_670delinsATGATG	p.Gln212MetfsTer9	p.Q212Mfs*9	ENST00000329236	NM_001204466.1	212	CAGGGCTCGGAGCCAAGCTCAGAGAACGCCAATGACAcc/ATGATGcc																																																																														
NRAS	0	MSKCC	GRCh37	1	115258696	115258696	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	314	405	0	ENST00000369535.4:c.86T>C	p.Val29Ala	p.V29A	ENST00000369535	NM_002524.4	29	gTa/gCa																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850850	63850850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	464	615	1	ENST00000279873.7:c.1628C>T	p.Pro543Leu	p.P543L	ENST00000279873	NM_032199.2	543	cCa/cTa																																																																														
PGR	0	MSKCC	GRCh37	11	100998537	100998538	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	479	625	1	ENST00000325455.5:c.1264_1265delinsAA	p.Pro422Lys	p.P422K	ENST00000325455	NM_001202474.3	422	CCg/AAg																																																																														
CBL	0	MSKCC	GRCh37	11	119158586	119158586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	479	999	0	ENST00000264033.4:c.1967del	p.Gly656ValfsTer46	p.G656Vfs*46	ENST00000264033	NM_005188.3	656	Ggt/gt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112127	115112127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	1257	1053	0	ENST00000257566.3:c.1613G>C	p.Gly538Ala	p.G538A	ENST00000257566	NM_016569.3	538	gGc/gCc																																																																														
RB1	0	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	177	797	1	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031814	10031814	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	561	589	0	ENST00000330684.3:c.1007+2T>A		p.X336_splice	ENST00000330684	NM_001134407.1	336																																																																															
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	1031	1238	4	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600470	10600470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	1434	992	0	ENST00000171111.5:c.1385G>T	p.Gly462Val	p.G462V	ENST00000171111	NM_203500.1	462	gGg/gTg																																																																														
CD79A	0	MSKCC	GRCh37	19	42383074	42383074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	183	438	2	ENST00000221972.3:c.94G>T	p.Ala32Ser	p.A32S	ENST00000221972	NM_021601.3	32	Gcc/Tcc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026871	71026871	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	138	343	1	ENST00000318789.4:c.1351G>T	p.Asp451Tyr	p.D451Y	ENST00000318789	NM_032682.5	451	Gat/Tat																																																																														
FAT1	0	MSKCC	GRCh37	4	187549409	187549409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	559	721	2	ENST00000441802.2:c.4709G>T	p.Arg1570Leu	p.R1570L	ENST00000441802	NM_005245.3	1570	cGg/cTg																																																																														
ROS1	0	MSKCC	GRCh37	6	117746757	117746757	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	228	747	1	ENST00000368508.3:c.63G>C	p.Trp21Cys	p.W21C	ENST00000368508	NM_002944.2	21	tgG/tgC																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945004	151945004	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	11	81	0	ENST00000262189.6:c.2515A>T	p.Arg839Ter	p.R839*	ENST00000262189	NM_170606.2	839	Aga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	605	778	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0016693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	70	486	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
RB1	0	MSKCC	GRCh37	13	48942685	48942685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	141	569	1	ENST00000267163.4:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000267163	NM_000321.2	358	Cga/Tga																																																																														
FGFR2	0	MSKCC	GRCh37	10	123353315	123353315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	300	944	0	ENST00000358487.5:c.17G>A	p.Arg6His	p.R6H	ENST00000358487	NM_000141.4	6	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	565	1372	0	ENST00000269305.4:c.400T>A	p.Phe134Ile	p.F134I	ENST00000269305	NM_001126112.2	134	Ttt/Att																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56152567	56152581	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGGGCCTGTGGTAA	GAGGGCCTGTGGTAA	-			P-0016693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	63	327	0	ENST00000399503.3:c.624_633+5del		p.X208_splice	ENST00000399503	NM_005921.1	208																																																																															
IRF4	0	MSKCC	GRCh37	6	394867	394867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	228	462	1	ENST00000380956.4:c.263C>T	p.Pro88Leu	p.P88L	ENST00000380956	NM_001195286.1	88	cCg/cTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55220281	55220281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	261	862	8	ENST00000275493.2:c.671G>A	p.Arg224His	p.R224H	ENST00000275493	NM_005228.3	224	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	43	853	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	27	593	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879549	151879549	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	25	367	0	ENST00000262189.6:c.5396C>A	p.Ser1799Ter	p.S1799*	ENST00000262189	NM_170606.2	1799	tCa/tAa																																																																														
PAX5	0	MSKCC	GRCh37	9	37015010	37015010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	23	462	0	ENST00000358127.4:c.394G>T	p.Val132Phe	p.V132F	ENST00000358127	NM_001280556.1	132	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	928	488	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MDM4	0	MSKCC	GRCh37	1	204518340	204518340	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	109	378	0	ENST00000367182.3:c.1003T>A	p.Ser335Thr	p.S335T	ENST00000367182	NM_001278516.1	335	Tca/Aca																																																																														
MSI1	0	MSKCC	GRCh37	12	120784020	120784020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1509	430	804	0	ENST00000257552.2:c.965C>A	p.Ala322Glu	p.A322E	ENST00000257552	NM_002442.3	322	gCg/gAg																																																																														
APC	0	MSKCC	GRCh37	5	112175390	112175391	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0016696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	233	229	0	ENST00000257430.4:c.4101_4102dup	p.Thr1368ArgfsTer48	p.T1368Rfs*48	ENST00000257430	NM_000038.5	1367	cag/cAGag																																																																														
APC	0	MSKCC	GRCh37	5	112175476	112175477	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0016696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	161	273	0	ENST00000257430.4:c.4187_4188del	p.Phe1396Ter	p.F1396*	ENST00000257430	NM_000038.5	1395	agTTtt/agtt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139873	55139873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	173	213	1	ENST00000257290.5:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000257290	NM_006206.4	512	Cga/Tga																																																																														
MALT1	0	MSKCC	GRCh37	18	56339083	56339084	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	AG	AG	CC			P-0016698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	24	62	0	ENST00000348428.3:c.208_209delinsCC	p.Ser70Pro	p.S70P	ENST00000348428	NM_006785.3	70	AGt/CCt																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538940	23538940	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	59	327	0	ENST00000380871.4:c.499C>G	p.Gln167Glu	p.Q167E	ENST00000380871	NM_006167.3	167	Caa/Gaa																																																																														
ESR1	0	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	186	349	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104264077	104264077	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	321	644	0	ENST00000369902.3:c.168del	p.Ile57SerfsTer39	p.I57Sfs*39	ENST00000369902	NM_016169.3	56	gcT/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	199	452	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	99	288	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
GLI1	0	MSKCC	GRCh37	12	57864909	57864909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1281	143	520	0	ENST00000228682.2:c.2386C>A	p.Leu796Ile	p.L796I	ENST00000228682	NM_005269.2	796	Cta/Ata																																																																														
FLT1	0	MSKCC	GRCh37	13	28886222	28886222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	99	380	0	ENST00000282397.4:c.3400C>G	p.Leu1134Val	p.L1134V	ENST00000282397	NM_002019.4	1134	Ctg/Gtg																																																																														
SLX4	0	MSKCC	GRCh37	16	3633270	3633270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1740	184	822	0	ENST00000294008.3:c.4981A>G	p.Lys1661Glu	p.K1661E	ENST00000294008	NM_032444.2	1661	Aag/Gag																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24143198	24143198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1387	191	620	1	ENST00000263121.7:c.430G>T	p.Ala144Ser	p.A144S	ENST00000263121	NM_003073.3	144	Gcc/Tcc																																																																														
RAF1	0	MSKCC	GRCh37	3	12660111	12660111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	94	323	0	ENST00000251849.4:c.110G>A	p.Gly37Asp	p.G37D	ENST00000251849	NM_002880.3	37	gGc/gAc																																																																														
ESR1	0	MSKCC	GRCh37	6	152332823	152332823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	94	335	0	ENST00000206249.3:c.1129C>T	p.His377Tyr	p.H377Y	ENST00000206249	NM_000125.3	377	Cac/Tac																																																																														
PREX2	0	MSKCC	GRCh37	8	69021700	69021700	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	166	373	0	ENST00000288368.4:c.2989del	p.Ala997ProfsTer19	p.A997Pfs*19	ENST00000288368	NM_024870.2	996	gcG/gc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391403	139391403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	147	488	1	ENST00000277541.6:c.6788G>T	p.Arg2263Leu	p.R2263L	ENST00000277541	NM_017617.3	2263	cGg/cTg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0016702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	35	757	1	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
EZH2	0	MSKCC	GRCh37	7	148506444	148506444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	11	481	1	ENST00000320356.2:c.2068C>T	p.Arg690Cys	p.R690C	ENST00000320356	NM_004456.4	690	Cgt/Tgt																																																																														
IL10	0	MSKCC	GRCh37	1	206945761	206945763	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-			P-0016702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	103	318	0	ENST00000423557.1:c.18_20del	p.Leu7del	p.L7del	ENST00000423557	NM_000572.2	6	ctGCTc/ctc																																																																														
MSH6	0	MSKCC	GRCh37	2	48033376	48033376	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	100	591	0	ENST00000234420.5:c.3680T>C	p.Ile1227Thr	p.I1227T	ENST00000234420	NM_000179.2	1227	aTa/aCa																																																																														
VHL	0	MSKCC	GRCh37	3	10183692	10183693	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	132	777	0	ENST00000256474.2:c.161_162insA	p.Met54IlefsTer78	p.M54Ifs*78	ENST00000256474	NM_000551.3	54	atg/atAg																																																																														
FAT1	0	MSKCC	GRCh37	4	187542485	187542485	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	103	532	0	ENST00000441802.2:c.5255T>C	p.Leu1752Pro	p.L1752P	ENST00000441802	NM_005245.3	1752	cTa/cCa																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891199	101891199	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	22	392	0	ENST00000374994.4:c.160T>C	p.Cys54Arg	p.C54R	ENST00000374994	NM_004612.2	54	Tgc/Cgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	419	445	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	203	279	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
CARD11	0	MSKCC	GRCh37	7	2976745	2976745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	129	462	2	ENST00000396946.4:c.1267C>T	p.Arg423Trp	p.R423W	ENST00000396946	NM_032415.4	423	Cgg/Tgg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212457	5212457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	100	425	2	ENST00000357368.4:c.4660G>A	p.Ala1554Thr	p.A1554T	ENST00000357368	NM_002850.3	1554	Gcg/Acg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106862	27106862	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142069738		P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	91	255	0	ENST00000324856.7:c.6473G>A	p.Arg2158Gln	p.R2158Q	ENST00000324856	NM_006015.4	2158	cGa/cAa																																																																														
DDR2	0	MSKCC	GRCh37	1	162729744	162729744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	88	349	1	ENST00000367921.3:c.830G>T	p.Arg277Leu	p.R277L	ENST00000367921	NM_006182.2	277	cGc/cTc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120497807	120497807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	152	422	1	ENST00000256646.2:c.2075G>A	p.Arg692His	p.R692H	ENST00000256646	NM_024408.3	692	cGc/cAc																																																																														
FH	0	MSKCC	GRCh37	1	241665814	241665814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1365	120	333	0	ENST00000366560.3:c.1165G>T	p.Gly389Trp	p.G389W	ENST00000366560	NM_000143.3	389	Ggg/Tgg																																																																														
RET	0	MSKCC	GRCh37	10	43597802	43597802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	132	453	0	ENST00000355710.3:c.350C>A	p.Pro117His	p.P117H	ENST00000355710	NM_020975.4	117	cCc/cAc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851413	63851413	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	251	375	0	ENST00000279873.7:c.2191A>T	p.Ser731Cys	p.S731C	ENST00000279873	NM_032199.2	731	Agt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108121672	108121672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	124	383	2	ENST00000278616.4:c.1480G>T	p.Gly494Cys	p.G494C	ENST00000278616	NM_000051.3	494	Ggt/Tgt																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281957	49281957	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	146	508	0	ENST00000282018.3:c.1004C>A	p.Pro335His	p.P335H	ENST00000282018	NM_020377.2	335	cCt/cAt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858014	9858014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	122	356	0	ENST00000330684.3:c.3387C>A	p.His1129Gln	p.H1129Q	ENST00000330684	NM_001134407.1	1129	caC/caA																																																																														
FANCA	0	MSKCC	GRCh37	16	89806405	89806405	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	256	387	0	ENST00000389301.3:c.3931A>T	p.Ser1311Cys	p.S1311C	ENST00000389301	NM_000135.2	1311	Agt/Tgt																																																																														
CDK12	0	MSKCC	GRCh37	17	37618820	37618820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	276	415	0	ENST00000447079.4:c.496G>C	p.Val166Leu	p.V166L	ENST00000447079	NM_015083.1	166	Gta/Cta																																																																														
STAT5B	0	MSKCC	GRCh37	17	40353863	40353863	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	156	274	0	ENST00000293328.3:c.2257A>T	p.Thr753Ser	p.T753S	ENST00000293328	NM_012448.3	753	Acc/Tcc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78599550	78599552	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	105	248	0	ENST00000306801.3:c.222_224del	p.Asp74_Val75delinsGlu	p.D74_V75delinsE	ENST00000306801	NM_020761.2	74	gaTGTg/gag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5211650	5211650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	96	318	1	ENST00000357368.4:c.5185G>T	p.Gly1729Cys	p.G1729C	ENST00000357368	NM_002850.3	1729	Ggt/Tgt																																																																														
POLD1	0	MSKCC	GRCh37	19	50919755	50919755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	122	478	0	ENST00000440232.2:c.2923G>C	p.Gly975Arg	p.G975R	ENST00000440232	NM_002691.3	975	Ggc/Cgc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212426627	212426627	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	355	370	2	ENST00000342788.4:c.2487+1G>T		p.X829_splice	ENST00000342788	NM_005235.2	829																																																																															
DNMT3B	0	MSKCC	GRCh37	20	31374344	31374344	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	105	381	1	ENST00000328111.2:c.343G>T	p.Glu115Ter	p.E115*	ENST00000328111	NM_006892.3	115	Gag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40828012	40828012	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	76	226	0	ENST00000373198.4:c.2416C>G	p.Gln806Glu	p.Q806E	ENST00000373198	NM_133170.3	806	Cag/Gag																																																																														
AURKA	0	MSKCC	GRCh37	20	54958197	54958197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1621	175	546	0	ENST00000312783.6:c.410G>T	p.Arg137Leu	p.R137L	ENST00000312783	NM_198436.1	137	cGc/cTc																																																																														
NF2	0	MSKCC	GRCh37	22	30035138	30035138	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	282	449	0	ENST00000338641.4:c.300T>G	p.Phe100Leu	p.F100L	ENST00000338641	NM_000268.3	100	ttT/ttG																																																																														
ATR	0	MSKCC	GRCh37	3	142218475	142218475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	144	363	0	ENST00000350721.4:c.5374G>T	p.Ala1792Ser	p.A1792S	ENST00000350721	NM_001184.3	1792	Gca/Tca																																																																														
SOX2	0	MSKCC	GRCh37	3	181430866	181430866	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	404	748	0	ENST00000325404.1:c.718A>T	p.Met240Leu	p.M240L	ENST00000325404	NM_003106.3	240	Atg/Ttg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152116	55152116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	158	449	0	ENST00000257290.5:c.2548G>T	p.Val850Leu	p.V850L	ENST00000257290	NM_006206.4	850	Gtg/Ttg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161671	56161671	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	109	375	0	ENST00000399503.3:c.1168C>T	p.Gln390Ter	p.Q390*	ENST00000399503	NM_005921.1	390	Cag/Tag																																																																														
NSD1	0	MSKCC	GRCh37	5	176631153	176631153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	107	305	0	ENST00000439151.2:c.1096G>T	p.Val366Leu	p.V366L	ENST00000439151	NM_022455.4	366	Gtg/Ttg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151835952	151835952	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1188	149	338	0	ENST00000262189.6:c.14572G>T	p.Glu4858Ter	p.E4858*	ENST00000262189	NM_170606.2	4858	Gaa/Taa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8525030	8525030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	77	188	0	ENST00000356435.5:c.574C>A	p.Leu192Ile	p.L192I	ENST00000356435		192	Ctt/Att																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636759	8636759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	94	270	0	ENST00000356435.5:c.150C>A	p.Asp50Glu	p.D50E	ENST00000356435		50	gaC/gaA																																																																														
ATRX	0	MSKCC	GRCh37	X	76972661	76972661	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	152	380	0	ENST00000373344.5:c.80A>T	p.Glu27Val	p.E27V	ENST00000373344	NM_000489.3	27	gAa/gTa																																																																														
SMO	0	MSKCC	GRCh37	7	128846052	128846053	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0016703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1194	252	492	0	ENST00000249373.3:c.982_983delinsA	p.Gly328MetfsTer59	p.G328Mfs*59	ENST00000249373	NM_005631.4	328	GGt/At																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	363	410	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	42	305	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
IKZF1	0	MSKCC	GRCh37	7	50455075	50455075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	162	237	0	ENST00000331340.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000331340	NM_006060.4	208	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	186	341	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	653	735	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	121	384	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	343	234	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																																																														
PBRM1	0	MSKCC	GRCh37	3	52620541	52620541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141958485		P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	291	384	0	ENST00000394830.3:c.3212G>A	p.Arg1071His	p.R1071H	ENST00000394830	NM_018313.4	1071	cGc/cAc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741513	17741513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	149	541	1	ENST00000250003.3:c.184C>T	p.His62Tyr	p.H62Y	ENST00000250003	NM_002478.4	62	Cac/Tac																																																																														
IRS2	0	MSKCC	GRCh37	13	110436431	110436431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1532	133	657	0	ENST00000375856.3:c.1970C>T	p.Thr657Met	p.T657M	ENST00000375856	NM_003749.2	657	aCg/aTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821732	72821732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	31	249	0	ENST00000268489.5:c.10443G>C	p.Arg3481Ser	p.R3481S	ENST00000268489	NM_006885.3	3481	agG/agC																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368253	45368253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	259	328	0	ENST00000262160.6:c.1349A>G	p.Asp450Gly	p.D450G	ENST00000262160	NM_005901.5	450	gAc/gGc																																																																														
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	170	171	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																														
PREX2	0	MSKCC	GRCh37	8	69020378	69020379	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0016704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	54	443	0	ENST00000288368.4:c.2750_2751delinsA	p.Thr917AsnfsTer26	p.T917Nfs*26	ENST00000288368	NM_024870.2	917	aCT/aA																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	75	512	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	260	378	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0016707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	222	554	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	187	937	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138480	11138480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	140	999	1	ENST00000344626.4:c.3236C>T	p.Ser1079Leu	p.S1079L	ENST00000344626	NM_003072.3	1079	tCg/tTg																																																																														
PMS1	0	MSKCC	GRCh37	2	190670442	190670442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	73	747	0	ENST00000441310.2:c.380G>T	p.Gly127Val	p.G127V	ENST00000441310	NM_000534.4	127	gGc/gTc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793287	242793287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	205	1387	1	ENST00000334409.5:c.790C>A	p.Arg264Ser	p.R264S	ENST00000334409	NM_005018.2	264	Cgc/Agc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024578	31024578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	48	795	0	ENST00000375687.4:c.4063G>A	p.Asp1355Asn	p.D1355N	ENST00000375687	NM_015338.5	1355	Gac/Aac																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739119	40739119	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	42	635	0	ENST00000373198.4:c.3165C>A	p.Tyr1055Ter	p.Y1055*	ENST00000373198	NM_133170.3	1055	taC/taA																																																																														
WHSC1	0	MSKCC	GRCh37	4	1953902	1953902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	148	1315	1	ENST00000382891.5:c.2081G>T	p.Cys694Phe	p.C694F	ENST00000382891	NM_133335.3	694	tGc/tTc																																																																														
PTP4A1	0	MSKCC	GRCh37	6	64290041	64290041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	78	1027	0	ENST00000370651.3:c.484G>A	p.Asp162Asn	p.D162N	ENST00000370651	NM_003463.4	162	Gat/Aat																																																																														
PREX2	0	MSKCC	GRCh37	8	69021735	69021735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	72	936	3	ENST00000288368.4:c.3023G>A	p.Gly1008Asp	p.G1008D	ENST00000288368	NM_024870.2	1008	gGc/gAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	88	1420	2	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	88	1420	2	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	88	1420	2	ENST00000304494.5:c.457+1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
RBM10	0	MSKCC	GRCh37	X	47034417	47034418	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	108	904	3	ENST00000329236.7:c.272-1_272delinsTT		p.X91_splice	ENST00000329236	NM_001204466.1	91																																																																															
AMER1	0	MSKCC	GRCh37	X	63412830	63412831	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	120	1069	0	ENST00000330258.3:c.336_337delinsT	p.Glu112AspfsTer58	p.E112Dfs*58	ENST00000330258	NM_152424.3	112	gaAGga/gaTga																																																																														
STK11	0	MSKCC	GRCh37	19	1219351	1219352	+	frameshift_variant	Frame_Shift_Ins	INS	GG	GG	TTT			P-0016708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	112	1042	0	ENST00000326873.7:c.403_404delinsTTT	p.Gly135PhefsTer28	p.G135Ffs*28	ENST00000326873	NM_000455.4	135	GGc/TTTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0016710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	142	1291	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	143	980	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MST1R	0	MSKCC	GRCh37	3	49934174	49934174	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	70	1116	0	ENST00000296474.3:c.2333A>G	p.Asn778Ser	p.N778S	ENST00000296474	NM_002447.2	778	aAc/aGc																																																																														
RHEB	0	MSKCC	GRCh37	7	151167659	151167659	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0016710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	120	853	0	ENST00000262187.5:c.460C>T	p.Gln154Ter	p.Q154*	ENST00000262187	NM_005614.3	154	Cag/Tag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0016712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	72	461	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0016712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	72	461	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	165	964	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10267096	10267096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	115	619	0	ENST00000340748.4:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000340748		441	cCa/cTa																																																																														
PLK2	0	MSKCC	GRCh37	5	57753938	57753938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	37	507	0	ENST00000274289.3:c.686G>A	p.Arg229Lys	p.R229K	ENST00000274289	NM_006622.3	229	aGg/aAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	545	1492	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	173	730	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	173	730	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	173	730	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
RB1	0	MSKCC	GRCh37	13	48941658	48941658	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	67	465	0	ENST00000267163.4:c.968A>G	p.Glu323Gly	p.E323G	ENST00000267163	NM_000321.2	323	gAa/gGa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18650569	18650569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	121	662	1	ENST00000266497.5:c.2780G>A	p.Arg927His	p.R927H	ENST00000266497		927	cGt/cAt																																																																														
HNF1A	0	MSKCC	GRCh37	12	121432024	121432024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	333	1358	0	ENST00000257555.6:c.771C>A	p.Asn257Lys	p.N257K	ENST00000257555		257	aaC/aaA																																																																														
TSC2	0	MSKCC	GRCh37	16	2114373	2114373	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	361	1213	0	ENST00000219476.3:c.1544delT	p.Leu515ArgfsTer20	p.L515Rfs*20	ENST00000219476	NM_000548.3	515	cTg/cg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943729	9943729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	286	840	1	ENST00000330684.3:c.1212C>A	p.Asn404Lys	p.N404K	ENST00000330684	NM_001134407.1	404	aaC/aaA																																																																														
UPF1	0	MSKCC	GRCh37	19	18976400	18976400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	293	1518	0	ENST00000262803.5:c.3050G>C	p.Arg1017Pro	p.R1017P	ENST00000262803	NM_002911.3	1017	cGt/cCt																																																																														
IRS1	0	MSKCC	GRCh37	2	227661612	227661612	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	121	622	0	ENST00000305123.5:c.1843A>T	p.Met615Leu	p.M615L	ENST00000305123	NM_005544.2	615	Atg/Ttg																																																																														
SETD2	0	MSKCC	GRCh37	3	47158242	47158242	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	95	519	0	ENST00000409792.3:c.4457A>T	p.Lys1486Met	p.K1486M	ENST00000409792	NM_014159.6	1486	aAg/aTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187542429	187542429	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	178	570	0	ENST00000441802.2:c.5311A>G	p.Thr1771Ala	p.T1771A	ENST00000441802	NM_005245.3	1771	Aca/Gca																																																																														
EPHA7	0	MSKCC	GRCh37	6	94068039	94068039	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	164	623	0	ENST00000369303.4:c.923C>G	p.Ser308Cys	p.S308C	ENST00000369303	NM_004440.3	308	tCc/tGc																																																																														
HGF	0	MSKCC	GRCh37	7	81374390	81374390	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	109	697	0	ENST00000222390.5:c.672T>A	p.Asp224Glu	p.D224E	ENST00000222390	NM_000601.4	224	gaT/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	196	966	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	8	415	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	17	775	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	10	393	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
ALK	0	MSKCC	GRCh37	2	29451921	29451921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	143	1140	1	ENST00000389048.3:c.2644G>A	p.Gly882Ser	p.G882S	ENST00000389048	NM_004304.4	882	Ggc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112111332	112111332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	75	490	0	ENST00000257430.4:c.429G>T	p.Leu143Phe	p.L143F	ENST00000257430	NM_000038.5	143	ttG/ttT																																																																														
HGF	0	MSKCC	GRCh37	7	81374316	81374316	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	96	374	0	ENST00000222390.5:c.746G>T	p.Arg249Ile	p.R249I	ENST00000222390	NM_000601.4	249	aGa/aTa																																																																														
BCOR	0	MSKCC	GRCh37	X	39914672	39914672	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	175	968	0	ENST00000378444.4:c.4690A>T	p.Arg1564Ter	p.R1564*	ENST00000378444	NM_001123385.1	1564	Aga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	75	1112	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1548	80	1499	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100324	27100324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1612	95	1488	1	ENST00000324856.7:c.4036C>T	p.Gln1346Ter	p.Q1346*	ENST00000324856	NM_006015.4	1346	Caa/Taa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974787	21974799	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCGAAGGCTC	CAGCCGAAGGCTC	-			P-0016717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	15	309	0	ENST00000304494.5:c.28_40del	p.Glu10ThrfsTer12	p.E10Tfs*12	ENST00000304494	NM_000077.4	10	GAGCCTTCGGCTGac/ac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974787	21974799	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCGAAGGCTC	CAGCCGAAGGCTC	-			P-0016717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	15	309	0	ENST00000304494.5:c.28_40del	p.Glu10ThrfsTer12	p.E10Tfs*12	ENST00000304494	NM_000077.4	10	GAGCCTTCGGCTGac/ac																																																																														
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	402	998	2	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
SETD2	0	MSKCC	GRCh37	3	47084108	47084108	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	377	912	3	ENST00000409792.3:c.7181A>G	p.Asn2394Ser	p.N2394S	ENST00000409792	NM_014159.6	2394	aAc/aGc																																																																														
SETD2	0	MSKCC	GRCh37	3	47162687	47162687	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	269	667	3	ENST00000409792.3:c.3439C>T	p.Gln1147Ter	p.Q1147*	ENST00000409792	NM_014159.6	1147	Cag/Tag																																																																														
BAP1	0	MSKCC	GRCh37	3	52436652	52436654	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0016718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	322	854	0	ENST00000460680.1:c.2020_2022del	p.Phe674del	p.F674del	ENST00000460680	NM_004656.3	674	TTC/-																																																																														
TBX3	0	MSKCC	GRCh37	12	115112356	115112357	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0016719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	104	536	0	ENST00000257566.3:c.1382_1383dup	p.Thr462AlafsTer171	p.T462Afs*171	ENST00000257566	NM_016569.3	461	-/GC																																																																														
TBX3	0	MSKCC	GRCh37	12	115118894	115118894	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	152	621	0	ENST00000257566.3:c.447del	p.Tyr149Ter	p.Y149*	ENST00000257566	NM_016569.3	149	taC/ta																																																																														
CDH1	0	MSKCC	GRCh37	16	68772295	68772298	+	frameshift_variant	Frame_Shift_Del	DEL	AGGC	AGGC	-			P-0016719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	223	1042	0	ENST00000261769.5:c.144_147del	p.Arg48SerfsTer7	p.R48Sfs*7	ENST00000261769	NM_004360.3	48	agAGGC/ag																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470480	25470480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	142	661	2	ENST00000264709.3:c.994G>A	p.Gly332Arg	p.G332R	ENST00000264709	NM_175629.2	332	Gga/Aga																																																																														
PALB2	0	MSKCC	GRCh37	16	23614977	23614977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	36	316	0	ENST00000261584.4:c.3364G>A	p.Asp1122Asn	p.D1122N	ENST00000261584	NM_024675.3	1122	Gac/Aac																																																																														
PALB2	0	MSKCC	GRCh37	16	23614979	23614979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	37	302	0	ENST00000261584.4:c.3362G>T	p.Gly1121Val	p.G1121V	ENST00000261584	NM_024675.3	1121	gGt/gTt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10251477	10251477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	119	629	0	ENST00000340748.4:c.3455C>T	p.Ser1152Leu	p.S1152L	ENST00000340748		1152	tCg/tTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873344	151873344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	60	201	0	ENST00000262189.6:c.9194A>G	p.Glu3065Gly	p.E3065G	ENST00000262189	NM_170606.2	3065	gAa/gGa																																																																														
LYN	0	MSKCC	GRCh37	8	56879387	56879387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	57	556	1	ENST00000519728.1:c.904C>T	p.Leu302Phe	p.L302F	ENST00000519728	NM_002350.3	302	Ctc/Ttc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	69	615	2	ENST00000371953.3:c.395G>T	p.Gly132Val	p.G132V	ENST00000371953	NM_000314.4	132	gGt/gTt																																																																														
ESR1	0	MSKCC	GRCh37	6	152382214	152382214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	105	399	0	ENST00000206249.3:c.1324G>A	p.Gly442Arg	p.G442R	ENST00000206249	NM_000125.3	442	Gga/Aga																																																																														
MTOR	0	MSKCC	GRCh37	1	11303175	11303175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	128	397	0	ENST00000361445.4:c.1408C>T	p.His470Tyr	p.H470Y	ENST00000361445	NM_004958.3	470	Cat/Tat																																																																														
TP53	0	MSKCC	GRCh37	17	7579407	7579414	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGGGGC	ACAGGGGC	CCGGGGG			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	137	642	1	ENST00000269305.4:c.273_280delinsCCCCCGG	p.Trp91CysfsTer32	p.W91Cfs*32	ENST00000269305	NM_001126112.2	91	tgGCCCCTGTca/tgCCCCCGGca																																																																														
SDHA	0	MSKCC	GRCh37	5	236714	236714	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	47	203	0	ENST00000264932.6:c.1432G>T	p.Gly478Ter	p.G478*	ENST00000264932	NM_004168.2	478	Gga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175030	112175030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	23	220	0	ENST00000257430.4:c.3739G>T	p.Ala1247Ser	p.A1247S	ENST00000257430	NM_000038.5	1247	Gcc/Tcc																																																																														
PRDM1	0	MSKCC	GRCh37	6	106543490	106543490	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	66	302	0	ENST00000369096.4:c.292G>T	p.Val98Phe	p.V98F	ENST00000369096	NM_001198.3	98	Gtt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1597	146	587	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974765	21974765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	87	184	0	ENST00000304494.5:c.62C>A	p.Ala21Asp	p.A21D	ENST00000304494	NM_000077.4	21	gCc/gAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974765	21974765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	87	184	0	ENST00000304494.5:c.62C>A	p.Ala21Asp	p.A21D	ENST00000304494	NM_000077.4	21	gCc/gAc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71247442	71247442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	203	390	0	ENST00000318789.4:c.91G>T	p.Gly31Cys	p.G31C	ENST00000318789	NM_032682.5	31	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577088	7577088	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1413	300	600	0	ENST00000269305.4:c.850A>C	p.Thr284Pro	p.T284P	ENST00000269305	NM_001126112.2	284	Aca/Cca																																																																														
MPL	0	MSKCC	GRCh37	1	43803598	43803598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	99	353	0	ENST00000372470.3:c.79G>T	p.Asp27Tyr	p.D27Y	ENST00000372470	NM_005373.2	27	Gat/Tat																																																																														
RFWD2	0	MSKCC	GRCh37	1	175956229	175956229	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	150	323	0	ENST00000367669.3:c.1983T>A	p.Asn661Lys	p.N661K	ENST00000367669	NM_022457.5	661	aaT/aaA																																																																														
CCND1	0	MSKCC	GRCh37	11	69457796	69457796	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	41	244	0	ENST00000227507.2:c.199-3T>C		p.X67_splice	ENST00000227507	NM_053056.2	67																																																																															
CDH1	0	MSKCC	GRCh37	16	68844107	68844107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	96	340	0	ENST00000261769.5:c.695C>T	p.Ser232Phe	p.S232F	ENST00000261769	NM_004360.3	232	tCt/tTt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41249267	41249267	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1706	155	604	0	ENST00000357654.3:c.587A>C	p.Tyr196Ser	p.Y196S	ENST00000357654	NM_007294.3	196	tAt/tCt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610225	10610225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	242	508	0	ENST00000171111.5:c.485A>G	p.Tyr162Cys	p.Y162C	ENST00000171111	NM_203500.1	162	tAc/tGc																																																																														
RAF1	0	MSKCC	GRCh37	3	12626736	12626736	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149580968		P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	72	314	0	ENST00000251849.4:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000251849	NM_002880.3	518	cGa/cAa																																																																														
STK19	0	MSKCC	GRCh37	6	31948503	31948503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	162	415	0	ENST00000375331.2:c.974G>T	p.Arg325Leu	p.R325L	ENST00000375331	NM_004197.1	325	cGg/cTg																																																																														
ROS1	0	MSKCC	GRCh37	6	117679105	117679105	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs56192249		P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	258	393	0	ENST00000368508.3:c.3716A>T	p.Tyr1239Phe	p.Y1239F	ENST00000368508	NM_002944.2	1239	tAc/tTc																																																																														
HGF	0	MSKCC	GRCh37	7	81372684	81372684	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	45	202	0	ENST00000222390.5:c.850G>C	p.Ala284Pro	p.A284P	ENST00000222390	NM_000601.4	284	Gca/Cca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0016725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	63	332	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	52	391	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1285	361	800	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	395	586	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	191	397	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	124	458	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591269	67591345	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATGAAAACACTGAAGAGTAAGTAGTTACTAAAGATGGTGATAGCA	TCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATGAAAACACTGAAGAGTAAGTAGTTACTAAAGATGGTGATAGCA	-			P-0016729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	60	289	0	ENST00000274335.5:c.1767_1814+29del		p.X589_splice	ENST00000274335		589																																																																															
KMT2C	0	MSKCC	GRCh37	7	151877813	151877814	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0016729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	162	181	0	ENST00000262189.6:c.7131_7132del	p.Thr2378ArgfsTer11	p.T2378Rfs*11	ENST00000262189	NM_170606.2	2377	gaTAca/gaca																																																																														
RAD52	0	MSKCC	GRCh37	12	1040408	1040408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	185	1111	1	ENST00000358495.3:c.164G>A	p.Arg55His	p.R55H	ENST00000358495	NM_134424.2	55	cGc/cAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	218	998	4	ENST00000373198.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000373198	NM_133170.3	546	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	202	908	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430823	78430830	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTGAAC	TCTTGAAC	-			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	216	1294	0	ENST00000370768.2:c.559_566del	p.Val187AsnfsTer6	p.V187Nfs*6	ENST00000370768	NM_003902.3	187	GTTCAAGAa/a																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223947	36223955	+	inframe_deletion	In_Frame_Del	DEL	TCCCAGGGG	TCCCAGGGG	-			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	75	1838	0	ENST00000222270.7:c.6497_6505del	p.Leu2166_Ala2169delinsPro	p.L2166_A2169delinsP	ENST00000222270	NM_014727.1	2166	cTCCCAGGGGcc/ccc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31409211	31409211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	228	1210	0	ENST00000344624.3:c.3806G>C	p.Cys1269Ser	p.C1269S	ENST00000344624		1269	tGc/tCc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151947017	151947017	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	161	840	0	ENST00000262189.6:c.1757A>G	p.Glu586Gly	p.E586G	ENST00000262189	NM_170606.2	586	gAg/gGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	644	622	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	402	629	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0016732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	142	501	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
RAD51C	0	MSKCC	GRCh37	17	56811497	56811497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			659	294	663	0	ENST00000337432.4:c.1045A>G	p.Thr349Ala	p.T349A	ENST00000337432	NM_058216.2	349	Act/Gct																																																																														
RPTOR	0	MSKCC	GRCh37	17	78921143	78921143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	121	473	1	ENST00000306801.3:c.3257C>T	p.Thr1086Met	p.T1086M	ENST00000306801	NM_020761.2	1086	aCg/aTg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259167	36259167	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			303	329	680	1	ENST00000300305.3:c.324C>A	p.Cys108Ter	p.C108*	ENST00000300305		108	tgC/tgA																																																																														
TAP1	0	MSKCC	GRCh37	6	32813370	32813370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016732-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			873	167	828	1	ENST00000354258.4:c.2413G>T	p.Asp805Tyr	p.D805Y	ENST00000354258	NM_000593.5	805	Gat/Tat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993399	72993399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	57	1401	0	ENST00000268489.5:c.646C>T	p.Pro216Ser	p.P216S	ENST00000268489	NM_006885.3	216	Ccg/Tcg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63810652	63810652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	260	675	0	ENST00000279873.7:c.739A>G	p.Asn247Asp	p.N247D	ENST00000279873	NM_032199.2	247	Aat/Gat																																																																														
POLE	0	MSKCC	GRCh37	12	133220012	133220012	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	85	1035	0	ENST00000320574.5:c.4425G>C	p.Gln1475His	p.Q1475H	ENST00000320574	NM_006231.2	1475	caG/caC																																																																														
FLT3	0	MSKCC	GRCh37	13	28609721	28609721	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	83	1471	1	ENST00000241453.7:c.1508T>A	p.Met503Lys	p.M503K	ENST00000241453	NM_004119.2	503	aTg/aAg																																																																														
MALT1	0	MSKCC	GRCh37	18	56339014	56339014	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	23	158	1	ENST00000348428.3:c.139C>T	p.Gln47Ter	p.Q47*	ENST00000348428	NM_006785.3	47	Cag/Tag																																																																														
CHEK2	0	MSKCC	GRCh37	22	29099511	29099535	+	frameshift_variant	Frame_Shift_Del	DEL	TAATCTTCTGCATCAAAAAAGTTTT	TAATCTTCTGCATCAAAAAAGTTTT	-			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	93	1415	0	ENST00000328354.6:c.866_890del	p.Lys289IlefsTer7	p.K289Ifs*7	ENST00000328354	NM_007194.3	289	aAAAACTTTTTTGATGCAGAAGATTAt/at																																																																														
RYBP	0	MSKCC	GRCh37	3	72427700	72427700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	156	586	1	ENST00000477973.2:c.788G>A	p.Glu264Lys	p.E264K	ENST00000477973	NM_012234.5	264	Gaa/Aaa																																																																														
FAM175A	0	MSKCC	GRCh37	4	84406180	84406180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	208	1129	1	ENST00000321945.7:c.46G>A	p.Gly16Ser	p.G16S	ENST00000321945	NM_139076.2	16	Ggc/Agc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151960216	151960216	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0016733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	78	503	0	ENST00000262189.6:c.1185-1G>C		p.X395_splice	ENST00000262189	NM_170606.2	395																																																																															
MET	0	MSKCC	GRCh37	7	116339387	116339387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	115	660	0	ENST00000397752.3:c.249G>C	p.Glu83Asp	p.E83D	ENST00000397752	NM_000245.2	83	gaG/gaC																																																																														
MET	0	MSKCC	GRCh37	7	116411877	116411888	+	intron_variant	Intron	DEL	AGCTCTTTCTTT	AGCTCTTTCTTT	-			P-0016736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1668	314	2083	0	ENST00000397752.3:c.2888-26_2888-15delAGCTCTTTCTTT		p.*963*	ENST00000397752	NM_000245.2																																																																																
ANKRD11	0	MSKCC	GRCh37	16	89346903	89346903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	42	121	0	ENST00000301030.4:c.6047C>T	p.Pro2016Leu	p.P2016L	ENST00000301030	NM_001256183.1	2016	cCc/cTc																																																																														
INSR	0	MSKCC	GRCh37	19	7170701	7170701	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1344	180	674	0	ENST00000302850.5:c.1330C>G	p.His444Asp	p.H444D	ENST00000302850	NM_000208.2	444	Cac/Gac																																																																														
EPHB1	0	MSKCC	GRCh37	3	134960134	134960134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	154	427	0	ENST00000398015.3:c.2491C>A	p.Gln831Lys	p.Q831K	ENST00000398015	NM_004441.4	831	Caa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	83	278	0	ENST00000324856.7:c.413C>G	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	428	324	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	534	969	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																																																														
FAT1	0	MSKCC	GRCh37	4	187518911	187518911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	435	481	0	ENST00000441802.2:c.12293G>T	p.Cys4098Phe	p.C4098F	ENST00000441802	NM_005245.3	4098	tGt/tTt																																																																														
ARID2	0	MSKCC	GRCh37	12	46244700	46244700	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	988	559	0	ENST00000334344.6:c.2795del	p.Pro932GlnfsTer31	p.P932Qfs*31	ENST00000334344	NM_152641.2	932	Cca/ca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427507	49427507	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	864	386	0	ENST00000301067.7:c.10981G>C	p.Gly3661Arg	p.G3661R	ENST00000301067	NM_003482.3	3661	Ggt/Cgt																																																																														
RB1	0	MSKCC	GRCh37	13	48934162	48934162	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0016740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	456	287	0	ENST00000267163.4:c.617T>G	p.Leu206Ter	p.L206*	ENST00000267163	NM_000321.2	206	tTa/tGa																																																																														
MGA	0	MSKCC	GRCh37	15	42042217	42042217	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	895	473	0	ENST00000219905.7:c.6412A>T	p.Ser2138Cys	p.S2138C	ENST00000219905	NM_001164273.1	2138	Agt/Tgt																																																																														
TSC2	0	MSKCC	GRCh37	16	2136847	2136847	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	494	511	0	ENST00000219476.3:c.4964A>T	p.Glu1655Val	p.E1655V	ENST00000219476	NM_000548.3	1655	gAg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578475	7578480	+	inframe_deletion	In_Frame_Del	DEL	GGGGGT	GGGGGT	-			P-0016740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	2317	744	0	ENST00000269305.4:c.450_455del	p.Pro152_Pro153del	p.P152_P153del	ENST00000269305	NM_001126112.2	150	acACCCCCg/acg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41276049	41276049	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1308	403	475	1	ENST00000357654.3:c.65T>A	p.Leu22Ter	p.L22*	ENST00000357654	NM_007294.3	22	tTa/tAa																																																																														
IRS1	0	MSKCC	GRCh37	2	227659968	227659968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	484	597	0	ENST00000305123.5:c.3487C>A	p.Pro1163Thr	p.P1163T	ENST00000305123	NM_005544.2	1163	Cca/Aca																																																																														
INPP4B	0	MSKCC	GRCh37	4	143352342	143352342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	371	408	0	ENST00000262992.4:c.71C>T	p.Pro24Leu	p.P24L	ENST00000262992	NM_001101669.1	24	cCc/cTc																																																																														
FLT4	0	MSKCC	GRCh37	5	180053029	180053029	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	1383	611	0	ENST00000261937.6:c.1261C>T	p.Pro421Ser	p.P421S	ENST00000261937	NM_182925.4	421	Ccc/Tcc																																																																														
LYN	0	MSKCC	GRCh37	8	56863280	56863280	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	318	516	0	ENST00000519728.1:c.424C>T	p.Gln142Ter	p.Q142*	ENST00000519728	NM_002350.3	142	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	200	477	0				ENST00000310581	NM_198253.2																																																																																
HRAS	0	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	245	663	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0016742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	305	545	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	91	563	1	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																														
ETV6	0	MSKCC	GRCh37	12	11905397	11905397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	54	306	0	ENST00000396373.4:c.47C>T	p.Ser16Leu	p.S16L	ENST00000396373	NM_001987.4	16	tCa/tTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1380	64	905	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	28	597	0	ENST00000263967.3:c.1634A>C	p.Glu545Ala	p.E545A	ENST00000263967	NM_006218.2	545	gAg/gCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	95	417	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	284	568	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
ERBB4	2066	MSKCC	GRCh37	2	212251839	212251839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	32	239	0	ENST00000342788.4:c.3220G>A	p.Glu1074Lys	p.E1074K	ENST00000342788	NM_005235.2	1074	Gaa/Aaa																																																																														
ATM	0	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	201	534	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																														
IGF2	0	MSKCC	GRCh37	11	2156680	2156680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1236	91	591	1	ENST00000434045.2:c.242C>A	p.Ala81Asp	p.A81D	ENST00000434045	NM_001127598.1	81	gCt/gAt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81953214	81953214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	67	217	0	ENST00000359376.3:c.2180G>A	p.Arg727Gln	p.R727Q	ENST00000359376	NM_002661.3	727	cGa/cAa																																																																														
CDK12	0	MSKCC	GRCh37	17	37618499	37618499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	70	418	1	ENST00000447079.4:c.175G>A	p.Glu59Lys	p.E59K	ENST00000447079	NM_015083.1	59	Gaa/Aaa																																																																														
FLCN	0	MSKCC	GRCh37	17	17124884	17124890	+	stop_gained	Nonsense_Mutation	DEL	CGGTCGG	CGGTCGG	A			P-0016744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	163	535	1	ENST00000285071.4:c.832_838delinsT	p.Pro278_Glu280delinsTer	p.P278_E280delins*	ENST00000285071	NM_144997.5	278	CCGACCGag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	42	450	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	3804	664	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578292	7578292	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0016747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	190	437	0	ENST00000269305.4:c.560-3T>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
BRAF	0	MSKCC	GRCh37	7	140434494	140434494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	155	341	0	ENST00000288602.6:c.2204G>A	p.Arg735Gln	p.R735Q	ENST00000288602	NM_004333.4	735	cGg/cAg																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	CA			P-0016748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	143	425	1	ENST00000256078.4:c.182_183delAAinsTG	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTG																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	127	563	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	77	452	0				ENST00000310581	NM_198253.2																																																																																
HRAS	0	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	320	622	0	ENST00000311189.7:c.38G>T	p.Gly13Val	p.G13V	ENST00000311189		13	gGt/gTt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098801	178098801	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	231	716	0	ENST00000397062.3:c.244G>C	p.Glu82Gln	p.E82Q	ENST00000397062	NM_006164.4	82	Gaa/Caa																																																																														
DICER1	0	MSKCC	GRCh37	14	95569964	95569964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	195	513	0	ENST00000343455.3:c.3769G>A	p.Val1257Met	p.V1257M	ENST00000343455	NM_177438.2	1257	Gtg/Atg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858758	9858760	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0016761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	28	265	0	ENST00000330684.3:c.2641_2643del	p.Lys881del	p.K881del	ENST00000330684	NM_001134407.1	881	AAG/-																																																																														
FAT1	0	MSKCC	GRCh37	4	187541414	187541415	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0016761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	133	420	0	ENST00000441802.2:c.6325_6326del	p.Asp2109GlnfsTer16	p.D2109Qfs*16	ENST00000441802	NM_005245.3	2109	GAc/c																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	727	643	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087551	27087566	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCGCTCAGGACCAC	TCTCGCTCAGGACCAC	-			P-0016763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	271	672	0	ENST00000324856.7:c.2131_2146del	p.Ser711LeufsTer26	p.S711Lfs*26	ENST00000324856	NM_006015.4	709	TCTCGCTCAGGACCACtc/tc																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134561	41134561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	651	498	0	ENST00000379561.5:c.1067C>T	p.Ala356Val	p.A356V	ENST00000379561	NM_002015.3	356	gCc/gTc																																																																														
RB1	0	MSKCC	GRCh37	13	48919223	48919244	+	frameshift_variant	Frame_Shift_Del	DEL	AAATTCTTTAACTTACTAAAAG	AAATTCTTTAACTTACTAAAAG	-			P-0016763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	261	256	1	ENST00000267163.4:c.393_414del	p.Phe131LeufsTer15	p.F131Lfs*15	ENST00000267163	NM_000321.2	130	AAATTCTTTAACTTACTAAAAGaa/aa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71161707	71161707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	257	469	0	ENST00000318789.4:c.262G>T	p.Asp88Tyr	p.D88Y	ENST00000318789	NM_032682.5	88	Gac/Tac																																																																														
KMT2C	0	MSKCC	GRCh37	7	152008947	152008947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	403	712	0	ENST00000262189.6:c.675G>A	p.Trp225Ter	p.W225*	ENST00000262189	NM_170606.2	225	tgG/tgA																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	124	685	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	72	711	1	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																														
APC	0	MSKCC	GRCh37	5	112157682	112157682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	75	308	0	ENST00000257430.4:c.1402G>T	p.Glu468Ter	p.E468*	ENST00000257430	NM_000038.5	468	Gaa/Taa																																																																														
AMER1	0	MSKCC	GRCh37	X	63411777	63411777	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	97	814	0	ENST00000330258.3:c.1390del	p.Ala464ProfsTer77	p.A464Pfs*77	ENST00000330258	NM_152424.3	464	Gcc/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	271	564	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	443	610	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	80	338	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245447	153245447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	286	507	0	ENST00000281708.4:c.1744T>C	p.Ser582Pro	p.S582P	ENST00000281708	NM_033632.3	582	Tcg/Ccg																																																																														
MGA	0	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	201	411	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099089	27099089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	182	529	2	ENST00000324856.7:c.3505C>A	p.Pro1169Thr	p.P1169T	ENST00000324856	NM_006015.4	1169	Cca/Aca																																																																														
RFWD2	0	MSKCC	GRCh37	1	176176017	176176017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	145	457	0	ENST00000367669.3:c.98C>T	p.Ser33Phe	p.S33F	ENST00000367669	NM_022457.5	33	tCt/tTt																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88672029	88672029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	109	447	0	ENST00000372037.3:c.563G>A	p.Arg188His	p.R188H	ENST00000372037	NM_004329.2	188	cGt/cAt																																																																														
MYD88	0	MSKCC	GRCh37	3	38182001	38182001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	156	367	0	ENST00000396334.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000396334	NM_002468.4	209	Cgc/Tgc																																																																														
MST1	0	MSKCC	GRCh37	3	49721518	49721519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	179	481	0	ENST00000449682.2:c.2119_2120dup	p.Phe708SerfsTer16	p.F708Sfs*16	ENST00000449682	NM_020998.3	707	gtc/gtGTc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143043279	143043279	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	38	384	0	ENST00000262992.4:c.2135+2T>A		p.X712_splice	ENST00000262992	NM_001101669.1	712																																																																															
FBXW7	0	MSKCC	GRCh37	4	153245380	153245380	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	160	493	0	ENST00000281708.4:c.1811A>C	p.Lys604Thr	p.K604T	ENST00000281708	NM_033632.3	604	aAa/aCa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151875096	151875097	+	splice_acceptor_variant	Splice_Site	INS	-	-	TT			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	13	51	1	ENST00000262189.6:c.7443-3_7443-2dupAA		p.X2481_splice	ENST00000262189	NM_170606.2	2481																																																																															
TEK	0	MSKCC	GRCh37	9	27203118	27203118	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	168	468	2	ENST00000380036.4:c.2209+1G>T		p.X737_splice	ENST00000380036	NM_000459.3	737																																																																															
BTK	0	MSKCC	GRCh37	X	100611203	100611203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	353	410	1	ENST00000308731.7:c.1403G>A	p.Arg468His	p.R468H	ENST00000308731	NM_000061.2	468	cGc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	116	395	0	ENST00000371953.3:c.176C>G	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tGa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061212	38061235	+	inframe_deletion	In_Frame_Del	DEL	GTAGCAGCCGTTCTCGAACATGTT	GTAGCAGCCGTTCTCGAACATGTT	-			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	178	487	1	ENST00000250448.2:c.754_777del	p.Asn252_Tyr259del	p.N252_Y259del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGCTAC/-																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830184	72830184	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	32	289	0	ENST00000268489.5:c.6397C>T	p.Gln2133Ter	p.Q2133*	ENST00000268489	NM_006885.3	2133	Cag/Tag																																																																														
FANCA	0	MSKCC	GRCh37	16	89877127	89877127	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	49	604	0	ENST00000389301.3:c.510A>T	p.Leu170Phe	p.L170F	ENST00000389301	NM_000135.2	170	ttA/ttT																																																																														
PMAIP1	0	MSKCC	GRCh37	18	57567446	57567446	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	81	451	0	ENST00000316660.6:c.37A>T	p.Ser13Cys	p.S13C	ENST00000316660	NM_021127.2	13	Agc/Tgc																																																																														
ERCC3	0	MSKCC	GRCh37	2	128038130	128038130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	88	488	0	ENST00000285398.2:c.1420G>C	p.Asp474His	p.D474H	ENST00000285398	NM_000122.1	474	Gat/Cat																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670646	134670646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	104	733	0	ENST00000398015.3:c.557T>C	p.Leu186Pro	p.L186P	ENST00000398015	NM_004441.4	186	cTt/cCt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803755	1803755	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	138	531	1	ENST00000260795.2:c.930+3G>A		p.X310_splice	ENST00000260795		310																																																																															
NOTCH1	0	MSKCC	GRCh37	9	139393371	139393374	+	missense_variant	Missense_Mutation	ONP	TGTT	TGTT	CAGG			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	54	676	1	ENST00000277541.6:c.6157_6160delinsCCTG	p.Asn2053_Lys2054delinsProGlu	p.N2053_K2054delinsPE	ENST00000277541	NM_017617.3	2053	AACAaa/CCTGaa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139417454	139417454	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	150	836	0	ENST00000277541.6:c.590A>T	p.Asn197Ile	p.N197I	ENST00000277541	NM_017617.3	197	aAc/aTc																																																																														
GATA3	0	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	222	562	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	341	802	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	146	651	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
FUBP1	0	MSKCC	GRCh37	1	78444680	78444680	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	28	491	0	ENST00000370768.2:c.9C>G	p.Asp3Glu	p.D3E	ENST00000370768	NM_003902.3	3	gaC/gaG																																																																														
AMER1	0	MSKCC	GRCh37	X	63411983	63411983	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	37	755	1	ENST00000330258.3:c.1184A>T	p.Glu395Val	p.E395V	ENST00000330258	NM_152424.3	395	gAg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	678	740	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0016774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	77	734	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	188	419	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
CDC42	0	MSKCC	GRCh37	1	22405041	22405041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	168	265	0	ENST00000344548.3:c.70A>G	p.Thr24Ala	p.T24A	ENST00000344548	NM_001039802.1	24	Aca/Gca																																																																														
RB1	0	MSKCC	GRCh37	13	49027162	49027171	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGACCGAG	AAGGACCGAG	-			P-0016777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	227	720	0	ENST00000267163.4:c.1736_1745del	p.Arg579GlnfsTer29	p.R579Qfs*29	ENST00000267163	NM_000321.2	577	AAGGACCGAGaa/aa																																																																														
WWTR1	0	MSKCC	GRCh37	3	149290705	149290705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	355	625	0	ENST00000360632.3:c.514G>C	p.Val172Leu	p.V172L	ENST00000360632	NM_015472.4	172	Gtc/Ctc																																																																														
RASA1	0	MSKCC	GRCh37	5	86659257	86659257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	201	477	0	ENST00000274376.6:c.1546C>G	p.Pro516Ala	p.P516A	ENST00000274376	NM_002890.2	516	Cca/Gca																																																																														
MED12	0	MSKCC	GRCh37	X	70341273	70341273	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	218	443	0	ENST00000374080.3:c.833del	p.Pro278LeufsTer35	p.P278Lfs*35	ENST00000374080		278	Cct/ct																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	272	499	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	347	746	1	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																														
PAK7	0	MSKCC	GRCh37	20	9546985	9546985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	108	236	0	ENST00000353224.5:c.1037G>T	p.Gly346Val	p.G346V	ENST00000353224	NM_177990.2	346	gGg/gTg																																																																														
RB1	0	MSKCC	GRCh37	13	49027248	49027248	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	275	498	0	ENST00000267163.4:c.1814+1G>A		p.X605_splice	ENST00000267163	NM_000321.2	605																																																																															
RPS6KA4	0	MSKCC	GRCh37	11	64138172	64138172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	150	686	1	ENST00000334205.4:c.2095C>T	p.Arg699Cys	p.R699C	ENST00000334205	NM_003942.2	699	Cgc/Tgc																																																																														
NEGR1	0	MSKCC	GRCh37	1	72163700	72163700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	316	581	0	ENST00000357731.5:c.658G>A	p.Val220Ile	p.V220I	ENST00000357731	NM_173808.2	220	Gtt/Att																																																																														
FH	0	MSKCC	GRCh37	1	241665808	241665808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	387	550	0	ENST00000366560.3:c.1171C>T	p.His391Tyr	p.H391Y	ENST00000366560	NM_000143.3	391	Cat/Tat																																																																														
LATS2	0	MSKCC	GRCh37	13	21563057	21563057	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	347	761	0	ENST00000382592.4:c.862A>C	p.Ser288Arg	p.S288R	ENST00000382592	NM_014572.2	288	Agc/Cgc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30100041	30100041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	291	558	0	ENST00000331968.5:c.1579G>T	p.Asp527Tyr	p.D527Y	ENST00000331968	NM_002742.2	527	Gat/Tat																																																																														
STK11	0	MSKCC	GRCh37	19	1220370	1220371	+	splice_acceptor_variant	Splice_Site	DNP	AG	AG	TC			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	249	477	2	ENST00000326873.7:c.465-2_465-1delinsTC		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
KEAP1	0	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	291	524	0	ENST00000171111.5:c.997G>C	p.Gly333Arg	p.G333R	ENST00000171111	NM_203500.1	333	Ggc/Cgc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213313	36213313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	245	736	0	ENST00000222270.7:c.2510C>G	p.Ser837Cys	p.S837C	ENST00000222270	NM_014727.1	837	tCc/tGc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793440	242793440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	320	621	2	ENST00000334409.5:c.637C>A	p.Pro213Thr	p.P213T	ENST00000334409	NM_005018.2	213	Ccc/Acc																																																																														
GATA2	0	MSKCC	GRCh37	3	128199890	128199890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	87	236	0	ENST00000341105.2:c.1415C>A	p.Pro472Gln	p.P472Q	ENST00000341105	NM_032638.4	472	cCg/cAg																																																																														
BCL6	0	MSKCC	GRCh37	3	187447318	187447318	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	40	445	0	ENST00000232014.4:c.875C>G	p.Pro292Arg	p.P292R	ENST00000232014	NM_001130845.1	292	cCc/cGc																																																																														
FAT1	0	MSKCC	GRCh37	4	187542261	187542261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	130	357	0	ENST00000441802.2:c.5479G>T	p.Gly1827Cys	p.G1827C	ENST00000441802	NM_005245.3	1827	Ggt/Tgt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528630	157528630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	369	675	0	ENST00000346085.5:c.6355G>T	p.Val2119Phe	p.V2119F	ENST00000346085	NM_020732.3	2119	Gtt/Ttt																																																																														
INHBA	0	MSKCC	GRCh37	7	41729425	41729425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	99	425	0	ENST00000242208.4:c.1104C>A	p.Phe368Leu	p.F368L	ENST00000242208	NM_002192.2	368	ttC/ttA																																																																														
MET	0	MSKCC	GRCh37	7	116380109	116380109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	375	653	0	ENST00000397752.3:c.1498G>T	p.Gly500Cys	p.G500C	ENST00000397752	NM_000245.2	500	Ggc/Tgc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87285821	87285821	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	285	561	0	ENST00000277120.3:c.158T>A	p.Val53Glu	p.V53E	ENST00000277120		53	gTg/gAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76937815	76937815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	197	311	2	ENST00000373344.5:c.2933C>A	p.Ser978Tyr	p.S978Y	ENST00000373344	NM_000489.3	978	tCt/tAt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	110	772	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	49	777	0	ENST00000256078.4:c.38G>T	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGc/gTc																																																																														
MAX	0	MSKCC	GRCh37	14	65544682	65544682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	74	679	0	ENST00000358664.4:c.244C>T	p.Gln82Ter	p.Q82*	ENST00000358664	NM_002382.4	82	Cag/Tag																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430851	78430851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	76	689	0	ENST00000370768.2:c.538G>T	p.Gly180Cys	p.G180C	ENST00000370768	NM_003902.3	180	Ggc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7574023	7574043	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCCCACGGATCTGCAGCAAC	CGCCCACGGATCTGCAGCAAC	-			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	91	820	2	ENST00000269305.4:c.994-10_1004del		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
CALR	0	MSKCC	GRCh37	19	13054391	13054391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	106	699	0	ENST00000316448.5:c.1001A>G	p.Asn334Ser	p.N334S	ENST00000316448	NM_004343.3	334	aAc/aGc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42866394	42866394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	75	738	0	ENST00000398585.3:c.238C>T	p.Gln80Ter	p.Q80*	ENST00000398585	NM_001135099.1	80	Cag/Tag																																																																														
CSF1R	0	MSKCC	GRCh37	5	149435894	149435894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	74	673	0	ENST00000286301.3:c.2330G>A	p.Arg777Gln	p.R777Q	ENST00000286301	NM_005211.3	777	cGg/cAg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395132	139395132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	134	577	2	ENST00000277541.6:c.5806G>A	p.Ala1936Thr	p.A1936T	ENST00000277541	NM_017617.3	1936	Gcc/Acc																																																																														
RBM10	0	MSKCC	GRCh37	X	47038816	47038864	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTACCAGGCCCAGGGAGTCCTGGCCTCCCAAGCCCTGTCACAGGGCT	CCCTACCAGGCCCAGGGAGTCCTGGCCTCCCAAGCCCTGTCACAGGGCT	-			P-0016780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	122	779	0	ENST00000329236.7:c.593_641del	p.Pro198ArgfsTer17	p.P198Rfs*17	ENST00000329236	NM_001204466.1	198	CCCTACCAGGCCCAGGGAGTCCTGGCCTCCCAAGCCCTGTCACAGGGCTcg/cg																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	106	441	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	125	667	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247207	153247207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	65	599	0	ENST00000281708.4:c.1595C>T	p.Thr532Ile	p.T532I	ENST00000281708	NM_033632.3	532	aCc/aTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	88	723	2	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
PAK7	0	MSKCC	GRCh37	20	9523321	9523321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	58	541	1	ENST00000353224.5:c.1916G>T	p.Gly639Val	p.G639V	ENST00000353224	NM_177990.2	639	gGc/gTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291496	15291496	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	68	465	0	ENST00000263388.2:c.3138G>C	p.Gln1046His	p.Q1046H	ENST00000263388	NM_000435.2	1046	caG/caC																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602921	10602923	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1351	223	902	0	ENST00000171111.5:c.655_657del	p.Glu219del	p.E219del	ENST00000171111	NM_203500.1	219	GAG/-																																																																														
POLE	0	MSKCC	GRCh37	12	133225637	133225637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	74	550	2	ENST00000320574.5:c.4027G>A	p.Gly1343Ser	p.G1343S	ENST00000320574	NM_006231.2	1343	Ggc/Agc																																																																														
IRS2	0	MSKCC	GRCh37	13	110436717	110436717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1744	154	923	1	ENST00000375856.3:c.1684del	p.Asp562ThrfsTer17	p.D562Tfs*17	ENST00000375856	NM_003749.2	562	Gac/ac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779419	3779419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	91	533	0	ENST00000262367.5:c.5629G>A	p.Val1877Met	p.V1877M	ENST00000262367	NM_004380.2	1877	Gtg/Atg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827310	72827310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	103	674	1	ENST00000268489.5:c.9271C>A	p.Leu3091Ile	p.L3091I	ENST00000268489	NM_006885.3	3091	Ctt/Att																																																																														
CD79B	0	MSKCC	GRCh37	17	62007704	62007704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	36	324	0	ENST00000392795.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000392795	NM_001039933.1	55	Gcc/Acc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533802	63533802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	53	422	0	ENST00000307078.5:c.1352G>A	p.Gly451Asp	p.G451D	ENST00000307078	NM_004655.3	451	gGc/gAc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78727933	78727933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	86	498	0	ENST00000306801.3:c.778G>A	p.Ala260Thr	p.A260T	ENST00000306801	NM_020761.2	260	Gct/Act																																																																														
PMAIP1	0	MSKCC	GRCh37	18	57567428	57567428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1322	142	557	0	ENST00000316660.6:c.19C>G	p.Arg7Gly	p.R7G	ENST00000316660	NM_021127.2	7	Cgc/Ggc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138600	11138600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	96	557	1	ENST00000344626.4:c.3356G>A	p.Arg1119His	p.R1119H	ENST00000344626	NM_003072.3	1119	cGc/cAc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36209197	36209202	+	inframe_deletion	In_Frame_Del	DEL	CGGGGA	CGGGGA	-			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	32	138	0	ENST00000222270.7:c.282_287del	p.Arg99_Gly100del	p.R99_G100del	ENST00000222270	NM_014727.1	93	CGGGGA/-																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214738	36214738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	143	467	0	ENST00000222270.7:c.3164G>T	p.Arg1055Leu	p.R1055L	ENST00000222270	NM_014727.1	1055	cGg/cTg																																																																														
MSH2	0	MSKCC	GRCh37	2	47705652	47705652	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	107	375	0	ENST00000233146.2:c.2452A>T	p.Lys818Ter	p.K818*	ENST00000233146	NM_000251.2	818	Aag/Tag																																																																														
RICTOR	0	MSKCC	GRCh37	5	38946591	38946591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	40	438	0	ENST00000357387.3:c.4378G>A	p.Ala1460Thr	p.A1460T	ENST00000357387	NM_152756.3	1460	Gca/Aca																																																																														
RASA1	0	MSKCC	GRCh37	5	86648978	86648978	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	35	399	0	ENST00000274376.6:c.1261del	p.Asp421ThrfsTer3	p.D421Tfs*3	ENST00000274376	NM_002890.2	420	Ggg/gg																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225488	26225488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	44	192	1	ENST00000360408.1:c.106G>A	p.Val36Met	p.V36M	ENST00000360408	NM_003532.2	36	Gtg/Atg																																																																														
PIM1	0	MSKCC	GRCh37	6	37140886	37140886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	63	442	0	ENST00000373509.5:c.722C>A	p.Pro241His	p.P241H	ENST00000373509	NM_002648.3	241	cCt/cAt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151900060	151900060	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	64	620	1	ENST00000262189.6:c.4051delA	p.Arg1351GlyfsTer23	p.R1351Gfs*23	ENST00000262189	NM_170606.2	1351	Agg/gg																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128206856	128206856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	57	332	0	ENST00000265960.3:c.1367C>T	p.Thr456Met	p.T456M	ENST00000265960	NM_001006617.1	456	aCg/aTg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161731	56161756	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTTGTTTCACGCATGTCAAATTC	AAGTTTGTTTCACGCATGTCAAATTC	-			P-0016785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	161	696	0	ENST00000399503.3:c.1228_1253del	p.Lys410SerfsTer7	p.K410Sfs*7	ENST00000399503	NM_005921.1	410	AAGTTTGTTTCACGCATGTCAAATTCt/t																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56184142	56184142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	225	407	0	ENST00000399503.3:c.4347G>A	p.Trp1449Ter	p.W1449*	ENST00000399503	NM_005921.1	1449	tgG/tgA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	314	690	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0016786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	188	435	1	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																														
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	185	410	1	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																														
HNF1A	0	MSKCC	GRCh37	12	121431460	121431460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	218	456	0	ENST00000257555.6:c.664A>C	p.Lys222Gln	p.K222Q	ENST00000257555		222	Aag/Cag																																																																														
CDH1	0	MSKCC	GRCh37	16	68842405	68842409	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGT	TGGGT	-			P-0016786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	224	654	1	ENST00000261769.5:c.467_471del	p.Trp156TyrfsTer10	p.W156Yfs*10	ENST00000261769	NM_004360.3	156	TGGGTt/t																																																																														
SPEN	0	MSKCC	GRCh37	1	16237704	16237704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1965	315	657	0	ENST00000375759.3:c.1151G>A	p.Arg384Gln	p.R384Q	ENST00000375759	NM_015001.2	384	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	719	538	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PALB2	0	MSKCC	GRCh37	16	23649421	23649421	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	419	354	0	ENST00000261584.4:c.78G>T	p.Arg26Ser	p.R26S	ENST00000261584	NM_024675.3	26	agG/agT																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1537	737	802	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
CUL3	0	MSKCC	GRCh37	2	225376106	225376106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1519	267	698	0	ENST00000264414.4:c.848G>T	p.Gly283Val	p.G283V	ENST00000264414	NM_003590.4	283	gGg/gTg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185146836	185146836	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	210	381	0	ENST00000265026.3:c.467A>C	p.Gln156Pro	p.Q156P	ENST00000265026	NM_004721.4	156	cAg/cCg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143029344	143029344	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0016791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	192	290	0	ENST00000262992.4:c.2277-1G>T		p.X759_splice	ENST00000262992	NM_001101669.1	759																																																																															
PDGFRB	0	MSKCC	GRCh37	5	149501506	149501506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1222	535	700	0	ENST00000261799.4:c.2281G>T	p.Val761Phe	p.V761F	ENST00000261799	NM_002609.3	761	Gtc/Ttc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8517847	8517847	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	211	247	0	ENST00000356435.5:c.1543+1G>T		p.X515_splice	ENST00000356435		515																																																																															
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	154	311	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	195	399	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902838	1902838	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	293	575	0	ENST00000382891.5:c.457C>G	p.Gln153Glu	p.Q153E	ENST00000382891	NM_133335.3	153	Cag/Gag																																																																														
APC	0	MSKCC	GRCh37	5	112178655	112178655	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	75	388	0	ENST00000257430.4:c.7364A>C	p.Lys2455Thr	p.K2455T	ENST00000257430	NM_000038.5	2455	aAa/aCa																																																																														
EP300	0	MSKCC	GRCh37	22	41572413	41572413	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1410	185	494	0	ENST00000263253.7:c.4942C>T	p.Gln1648Ter	p.Q1648*	ENST00000263253	NM_001429.3	1648	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	288	433	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18271744	18271744	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1310	441	633	0	ENST00000222254.8:c.431C>G	p.Ser144Cys	p.S144C	ENST00000222254	NM_005027.3	144	tCt/tGt																																																																														
FGF3	0	MSKCC	GRCh37	11	69633583	69633583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	168	194	0	ENST00000334134.2:c.119G>T	p.Gly40Val	p.G40V	ENST00000334134	NM_005247.2	40	gGc/gTc																																																																														
H3F3A	0	MSKCC	GRCh37	1	226253493	226253493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	164	400	0	ENST00000366813.1:c.265G>A	p.Ala89Thr	p.A89T	ENST00000366813		89	Gct/Act																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925481	114925481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	192	537	0	ENST00000543371.1:c.1559C>T	p.Ser520Phe	p.S520F	ENST00000543371	NM_001198531.1	520	tCc/tTc																																																																														
PTPN11	0	MSKCC	GRCh37	12	112910815	112910817	+	frameshift_variant	Frame_Shift_Del	DEL	ACA	ACA	CC			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	262	609	1	ENST00000351677.2:c.824_826delinsCC	p.Asn275ThrfsTer64	p.N275Tfs*64	ENST00000351677	NM_002834.3	275	aACAaa/aCCaa																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281879	49281879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	135	504	0	ENST00000282018.3:c.926G>C	p.Gly309Ala	p.G309A	ENST00000282018	NM_020377.2	309	gGg/gCg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41256279	41256279	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	303	213	0	ENST00000357654.3:c.302-1G>A		p.X101_splice	ENST00000357654	NM_007294.3	101																																																																															
DNMT3B	0	MSKCC	GRCh37	20	31381390	31381390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	119	372	0	ENST00000328111.2:c.1115C>T	p.Ser372Leu	p.S372L	ENST00000328111	NM_006892.3	372	tCa/tTa																																																																														
PLK2	0	MSKCC	GRCh37	5	57751386	57751386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	170	228	0	ENST00000274289.3:c.1605G>C	p.Met535Ile	p.M535I	ENST00000274289	NM_006622.3	535	atG/atC																																																																														
MYC	0	MSKCC	GRCh37	8	128751101	128751101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1340	172	480	0	ENST00000377970.2:c.638C>G	p.Pro213Arg	p.P213R	ENST00000377970	NM_002467.4	213	cCt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	52	461	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0016797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1353	56	653	2	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	62	920	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0016800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	296	1585	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40979350	40979350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	71	729	1	ENST00000373198.4:c.1783G>A	p.Asp595Asn	p.D595N	ENST00000373198	NM_133170.3	595	Gac/Aac																																																																														
FLT1	0	MSKCC	GRCh37	13	28979972	28979972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	157	1486	0	ENST00000282397.4:c.1496G>A	p.Gly499Glu	p.G499E	ENST00000282397	NM_002019.4	499	gGa/gAa																																																																														
SOS1	0	MSKCC	GRCh37	2	39214610	39214614	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTACC	TTACC	-			P-0016800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	141	1038	0	ENST00000402219.2:c.3510_3510+4del		p.X1170_splice	ENST00000402219	NM_005633.3	1170																																																																															
PPP6C	0	MSKCC	GRCh37	9	127916000	127916000	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	138	1099	0	ENST00000373547.4:c.481del	p.Cys161ValfsTer70	p.C161Vfs*70	ENST00000373547	NM_002721.4	161	Tgt/gt																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20153932	20153932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	235	555	0	ENST00000379607.5:c.128G>A	p.Gly43Glu	p.G43E	ENST00000379607	NM_001412.3	43	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	142	532	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	68	314	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	207	330	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	128	497	1	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692893	89692893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	76	302	0	ENST00000371953.3:c.377C>A	p.Ala126Asp	p.A126D	ENST00000371953	NM_000314.4	126	gCt/gAt																																																																														
RYBP	0	MSKCC	GRCh37	3	72427754	72427754	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	59	178	0	ENST00000477973.2:c.734C>T	p.Gln246Ter	p.Q246*	ENST00000477973	NM_012234.5	246	Cag/Tag																																																																														
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	61	297	2	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																																																														
MYC	0	MSKCC	GRCh37	8	128750639	128750639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	79	318	1	ENST00000377970.2:c.176C>T	p.Ala59Val	p.A59V	ENST00000377970	NM_002467.4	59	gCg/gTg																																																																														
CIC	0	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	152	701	1	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																														
CCND1	0	MSKCC	GRCh37	11	69466026	69466028	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	144	502	0	ENST00000227507.2:c.866_868delACG	p.Asp289del	p.D289del	ENST00000227507	NM_053056.2	288	acCGAc/acc																																																																														
BLM	0	MSKCC	GRCh37	15	91295028	91295030	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	73	277	0	ENST00000355112.3:c.819_821del	p.Lys273del	p.K273del	ENST00000355112	NM_000057.2	271	AAG/-																																																																														
ATM	0	MSKCC	GRCh37	11	108213967	108213967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	84	234	3	ENST00000278616.4:c.8287C>T	p.Arg2763Ter	p.R2763*	ENST00000278616	NM_000051.3	2763	Cga/Tga																																																																														
PNRC1	10957	MSKCC	GRCh37	6	89793677	89793677	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	105	405	2	ENST00000336032.3:c.752del	p.Lys251SerfsTer14	p.K251Sfs*14	ENST00000336032	NM_006813.2	249	gAa/ga																																																																														
EZH2	0	MSKCC	GRCh37	7	148543606	148543606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	81	463	0	ENST00000320356.2:c.202G>A	p.Val68Met	p.V68M	ENST00000320356	NM_004456.4	68	Gtg/Atg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	65	226	0	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																														
MED12	0	MSKCC	GRCh37	X	70338671	70338671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	121	495	0	ENST00000374080.3:c.67G>T	p.Asp23Tyr	p.D23Y	ENST00000374080		23	Gat/Tat																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	93	443	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	174	550	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RXRA	0	MSKCC	GRCh37	9	137328347	137328347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	133	571	0	ENST00000481739.1:c.1276C>T	p.Arg426Cys	p.R426C	ENST00000481739	NM_002957.4	426	Cgc/Tgc																																																																														
SPEN	0	MSKCC	GRCh37	1	16247392	16247392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	67	199	0	ENST00000375759.3:c.1663G>A	p.Ala555Thr	p.A555T	ENST00000375759	NM_015001.2	555	Gcc/Acc																																																																														
STK40	0	MSKCC	GRCh37	1	36814324	36814324	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	55	339	0	ENST00000373129.3:c.716A>G	p.Tyr239Cys	p.Y239C	ENST00000373129	NM_032017.1	239	tAc/tGc																																																																														
CSDE1	0	MSKCC	GRCh37	1	115272881	115272882	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	95	386	0	ENST00000438362.2:c.1491_1492del	p.Lys498GlyfsTer3	p.K498Gfs*3	ENST00000438362	NM_001242891.1	497	gaGAag/gaag																																																																														
PTEN	0	MSKCC	GRCh37	10	89720672	89720677	+	inframe_deletion	In_Frame_Del	DEL	GTAAAT	GTAAAT	-			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	59	177	0	ENST00000371953.3:c.823_828del	p.Val275_Asn276del	p.V275_N276del	ENST00000371953	NM_000314.4	275	GTAAAT/-																																																																														
INPPL1	0	MSKCC	GRCh37	11	71936153	71936153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	24	248	0	ENST00000298229.2:c.125G>A	p.Gly42Asp	p.G42D	ENST00000298229	NM_001567.3	42	gGc/gAc																																																																														
KDM5A	0	MSKCC	GRCh37	12	493318	493318	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	118	345	0	ENST00000399788.2:c.245C>T	p.Ala82Val	p.A82V	ENST00000399788	NM_001042603.1	82	gCa/gTa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424178	49424178	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	66	257	0	ENST00000301067.7:c.13884delC	p.Thr4629ProfsTer11	p.T4629Pfs*11	ENST00000301067	NM_003482.3	4628	ccC/cc																																																																														
IRS2	0	MSKCC	GRCh37	13	110435009	110435009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	150	618	0	ENST00000375856.3:c.3392G>A	p.Arg1131His	p.R1131H	ENST00000375856	NM_003749.2	1131	cGc/cAc																																																																														
IRS2	0	MSKCC	GRCh37	13	110435727	110435727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	84	372	1	ENST00000375856.3:c.2674C>T	p.Arg892Cys	p.R892C	ENST00000375856	NM_003749.2	892	Cgc/Tgc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031919	10031919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	98	379	1	ENST00000330684.3:c.904G>A	p.Ala302Thr	p.A302T	ENST00000330684	NM_001134407.1	302	Gct/Act																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351057	89351057	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	136	537	0	ENST00000301030.4:c.1893delA	p.Lys631AsnfsTer22	p.K631Nfs*22	ENST00000301030	NM_001256183.1	631	aaA/aa																																																																														
STAT5B	0	MSKCC	GRCh37	17	40376852	40376852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	114	464	0	ENST00000293328.3:c.320G>A	p.Arg107His	p.R107H	ENST00000293328	NM_012448.3	107	cGc/cAc																																																																														
RNF43	0	MSKCC	GRCh37	17	56436049	56436049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	43	204	0	ENST00000407977.2:c.1088G>A	p.Arg363Gln	p.R363Q	ENST00000407977		363	cGg/cAg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211880	36211880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	186	726	0	ENST00000222270.7:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000222270	NM_014727.1	544	cGg/cAg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36222842	36222842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	147	640	1	ENST00000222270.7:c.5471C>T	p.Thr1824Ile	p.T1824I	ENST00000222270	NM_014727.1	1824	aCa/aTa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223274	36223274	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	234	794	0	ENST00000222270.7:c.5828del	p.Pro1943LeufsTer44	p.P1943Lfs*44	ENST00000222270	NM_014727.1	1942	Ccc/cc																																																																														
MSH6	0	MSKCC	GRCh37	2	48027175	48027175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	113	404	0	ENST00000234420.5:c.2053G>A	p.Gly685Ser	p.G685S	ENST00000234420	NM_000179.2	685	Ggt/Agt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212587240	212587240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	89	329	0	ENST00000342788.4:c.761A>G	p.Asp254Gly	p.D254G	ENST00000342788	NM_005235.2	254	gAc/gGc																																																																														
SETD2	0	MSKCC	GRCh37	3	47158134	47158134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	111	556	0	ENST00000409792.3:c.4565A>G	p.Asn1522Ser	p.N1522S	ENST00000409792	NM_014159.6	1522	aAt/aGt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134514526	134514526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	107	375	0	ENST00000398015.3:c.53T>C	p.Met18Thr	p.M18T	ENST00000398015	NM_004441.4	18	aTg/aCg																																																																														
MSH3	0	MSKCC	GRCh37	5	80088602	80088602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	147	530	0	ENST00000265081.6:c.2594C>A	p.Pro865His	p.P865H	ENST00000265081	NM_002439.4	865	cCt/cAt																																																																														
FLT4	0	MSKCC	GRCh37	5	180056328	180056328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	80	522	0	ENST00000261937.6:c.916G>A	p.Gly306Ser	p.G306S	ENST00000261937	NM_182925.4	306	Ggc/Agc																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553156	106553156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	69	317	0	ENST00000369096.4:c.1121A>G	p.Tyr374Cys	p.Y374C	ENST00000369096	NM_001198.3	374	tAc/tGc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133258	38133258	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	76	409	0	ENST00000317025.8:c.4215C>G	p.Cys1405Trp	p.C1405W	ENST00000317025	NM_023034.1	1405	tgC/tgG																																																																														
AR	0	MSKCC	GRCh37	X	66765719	66765719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1319	185	743	0	ENST00000374690.3:c.731C>T	p.Ser244Leu	p.S244L	ENST00000374690	NM_000044.3	244	tCg/tTg																																																																														
AR	0	MSKCC	GRCh37	X	66766594	66766594	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	136	596	0	ENST00000374690.3:c.1609del	p.Asp537ThrfsTer25	p.D537Tfs*25	ENST00000374690	NM_000044.3	536	Ggg/gg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591242	67591246	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTTCA	TTTCA	G			P-0016801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	80	269	0	ENST00000274335.5:c.1746-6_1746-2delinsG		p.X582_splice	ENST00000274335		582																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	17	192	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	34	314	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36206842	36206846	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCG	GCTCG	-			P-0016802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	30	200	0	ENST00000300305.3:c.666_670del	p.Glu223AlafsTer3	p.E223Afs*3	ENST00000300305		222	tcCGAGCgg/tcgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	550	390	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
GATA3	0	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	94	366	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	103	514	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
TET1	0	MSKCC	GRCh37	10	70332909	70332909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	132	713	0	ENST00000373644.4:c.814G>A	p.Glu272Lys	p.E272K	ENST00000373644	NM_030625.2	272	Gag/Aag																																																																														
ETV6	0	MSKCC	GRCh37	12	12038857	12038857	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0016807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	250	415	0	ENST00000396373.4:c.1153-3C>G		p.X385_splice	ENST00000396373	NM_001987.4	385																																																																															
MDM2	0	MSKCC	GRCh37	12	69214123	69214123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	62	434	0	ENST00000462284.1:c.327C>G	p.Ile109Met	p.I109M	ENST00000462284	NM_002392.5	109	atC/atG																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966313	25966313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	223	496	0	ENST00000435504.4:c.2893G>C	p.Glu965Gln	p.E965Q	ENST00000435504		965	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7579408	7579460	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	-			P-0016808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	775	501	0	ENST00000269305.4:c.227_279delCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTG	p.Ala76ValfsTer55	p.A76Vfs*55	ENST00000269305	NM_001126112.2	76	gCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTG/g																																																																														
SDHB	0	MSKCC	GRCh37	1	17359608	17359612	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAT	TTGAT	-			P-0016808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	145	512	0	ENST00000375499.3:c.229_233del	p.Ile77AspfsTer2	p.I77Dfs*2	ENST00000375499	NM_003000.2	77	ATCAAg/g																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426811	121426811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	402	446	0	ENST00000257555.6:c.502C>T	p.Arg168Cys	p.R168C	ENST00000257555		168	Cgc/Tgc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121432028	121432028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	149	683	0	ENST00000257555.6:c.775G>T	p.Val259Phe	p.V259F	ENST00000257555		259	Gtc/Ttc																																																																														
BAP1	0	MSKCC	GRCh37	3	52437266	52437266	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	365	424	0	ENST00000460680.1:c.1778del	p.Gln593ArgfsTer24	p.Q593Rfs*24	ENST00000460680	NM_004656.3	593	cAg/cg																																																																														
PREX2	0	MSKCC	GRCh37	8	68950487	68950487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	99	318	0	ENST00000288368.4:c.799C>A	p.Leu267Ile	p.L267I	ENST00000288368	NM_024870.2	267	Ctt/Att																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	275	561	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188317	32188317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144492578		P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	126	842	2	ENST00000375023.3:c.1024G>A	p.Val342Met	p.V342M	ENST00000375023	NM_004557.3	342	Gtg/Atg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	14	958	2	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																														
RHOA	0	MSKCC	GRCh37	3	49412958	49412958	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	136	1081	0	ENST00000418115.1:c.65T>G	p.Leu22Arg	p.L22R	ENST00000418115	NM_001664.2	22	cTc/cGc																																																																														
TBX3	0	MSKCC	GRCh37	12	115117410	115117411	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	92	453	1	ENST00000257566.3:c.763_764del	p.Val255LysfsTer4	p.V255Kfs*4	ENST00000257566	NM_016569.3	255	GTa/a																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061096	38061096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	10	158	0	ENST00000250448.2:c.893C>T	p.Ser298Phe	p.S298F	ENST00000250448	NM_004496.3	298	tCt/tTt																																																																														
CDH1	0	MSKCC	GRCh37	16	68846148	68846185	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATCTTCAATCCCACCACGGTAATTCTATAACTCCTTA	GATCTTCAATCCCACCACGGTAATTCTATAACTCCTTA	-			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	149	961	0	ENST00000261769.5:c.1121_1137+21del		p.X374_splice	ENST00000261769	NM_004360.3	374																																																																															
FOXL2	0	MSKCC	GRCh37	3	138664450	138664450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	130	495	0	ENST00000330315.3:c.1115C>T	p.Ser372Leu	p.S372L	ENST00000330315	NM_023067.3	372	tCg/tTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55241737	55241737	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0016810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	145	542	0	ENST00000275493.2:c.2184+1G>T		p.X728_splice	ENST00000275493	NM_005228.3	728																																																																															
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	253	610	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
CIC	0	MSKCC	GRCh37	19	42795016	42795016	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150818299		P-0016812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	355	847	1	ENST00000575354.2:c.2096C>T	p.Ala699Val	p.A699V	ENST00000575354	NM_015125.3	699	gCg/gTg																																																																														
RB1	0	MSKCC	GRCh37	13	48921970	48921971	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0016812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	259	524	0	ENST00000267163.4:c.511_512dup	p.Ile172LeufsTer4	p.I172Lfs*4	ENST00000267163	NM_000321.2	170	-/CT																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111921798	111921798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	193	396	0	ENST00000393256.3:c.587G>A	p.Arg196Lys	p.R196K	ENST00000393256	NM_006538.4	196	aGa/aAa																																																																														
TP53	0	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	25	678	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856313	111856313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	30	65	0	ENST00000341259.2:c.364G>A	p.Glu122Lys	p.E122K	ENST00000341259	NM_005475.2	122	Gag/Aag																																																																														
PLK2	0	MSKCC	GRCh37	5	57754323	57754501	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACCTTTCTTGCTTTCAAAATATGAGCCATTGACTAAGAAGAGGAGAAGGAAAAAAGAGAATCTGTCAAAACAGTTATCAAAATCACTGGTTTCCCTTTGCAGGATGAGCAATGAAAGTTAACTTTGCAGTGTAAGTGCTGCCACAGCTAAAATCCCAGATAAAATACTCTTTGAATAC	CACCTTTCTTGCTTTCAAAATATGAGCCATTGACTAAGAAGAGGAGAAGGAAAAAAGAGAATCTGTCAAAACAGTTATCAAAATCACTGGTTTCCCTTTGCAGGATGAGCAATGAAAGTTAACTTTGCAGTGTAAGTGCTGCCACAGCTAAAATCCCAGATAAAATACTCTTTGAATAC	-			P-0016813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	13	406	0	ENST00000274289.3:c.495+51_528del		p.X165_splice	ENST00000274289	NM_006622.3	165																																																																															
TAP1	0	MSKCC	GRCh37	6	32821125	32821125	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0016813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	370	882	0	ENST00000354258.4:c.469A>T	p.Lys157Ter	p.K157*	ENST00000354258	NM_000593.5	157	Aag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	245	475	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0016815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	278	1050	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061222	38061222	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	183	583	0	ENST00000250448.2:c.767A>T	p.Asn256Ile	p.N256I	ENST00000250448	NM_004496.3	256	aAc/aTc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45858935	45858935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	115	824	0	ENST00000391945.4:c.1531C>T	p.Arg511Trp	p.R511W	ENST00000391945	NM_000400.3	511	Cgg/Tgg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106526682	106526682	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	69	518	0	ENST00000359195.3:c.2975T>A	p.Leu992His	p.L992H	ENST00000359195	NM_002649.2	992	cTc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016816-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	243	461	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
JAK2	0	MSKCC	GRCh37	9	5126757	5126757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016816-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	114	443	2	ENST00000381652.3:c.3365G>A	p.Arg1122Gln	p.R1122Q	ENST00000381652	NM_004972.3	1122	cGa/cAa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32954019	32954019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016816-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	223	553	2	ENST00000380152.3:c.9086C>T	p.Ala3029Val	p.A3029V	ENST00000380152		3029	gCg/gTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993108	72993108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016816-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	284	662	1	ENST00000268489.5:c.937G>A	p.Glu313Lys	p.E313K	ENST00000268489	NM_006885.3	313	Gag/Aag																																																																														
SOS1	0	MSKCC	GRCh37	2	39224170	39224170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016816-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	129	385	0	ENST00000402219.2:c.2974G>A	p.Glu992Lys	p.E992K	ENST00000402219	NM_005633.3	992	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	80	641	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CARM1	0	MSKCC	GRCh37	19	11031171	11031171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	42	720	0	ENST00000327064.4:c.1256G>A	p.Arg419Gln	p.R419Q	ENST00000327064	NM_199141.1	419	cGg/cAg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457239	67457246	+	frameshift_variant	Frame_Shift_Del	DEL	GGATGGCC	GGATGGCC	-			P-0016817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	24	404	0	ENST00000327367.4:c.215_222del	p.Asp72ValfsTer36	p.D72Vfs*36	ENST00000327367	NM_005902.3	71	ctGGATGGCCgg/ctgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578523	7578542	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCAAAACATCTTGTTGAG	TGGCAAAACATCTTGTTGAG	-			P-0016817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	54	955	0	ENST00000269305.4:c.388_407del	p.Leu130ThrfsTer12	p.L130Tfs*12	ENST00000269305	NM_001126112.2	130	CTCAACAAGATGTTTTGCCAa/a																																																																														
PTCH1	0	MSKCC	GRCh37	9	98229433	98229433	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	22	259	0	ENST00000331920.6:c.2525A>T	p.Lys842Ile	p.K842I	ENST00000331920	NM_000264.3	842	aAa/aTa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	152	497	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177011	56177014	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0016818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	116	305	0	ENST00000399503.3:c.2286_2289delTAGA	p.Arg763CysfsTer35	p.R763Cfs*35	ENST00000399503	NM_005921.1	761	ATAGat/at																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161175	56161176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0016818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	107	321	0	ENST00000399503.3:c.1047_1048dup	p.Ala350ValfsTer13	p.A350Vfs*13	ENST00000399503	NM_005921.1	348	-/TG																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106545763	106545763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	185	453	0	ENST00000359195.3:c.3240G>T	p.Trp1080Cys	p.W1080C	ENST00000359195	NM_002649.2	1080	tgG/tgT																																																																														
CDH1	0	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	130	573	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																														
POLE	0	MSKCC	GRCh37	12	133248848	133248876	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGGGCGTGGCGCAAGGTCTTCTCAACC	CAAGGGCGTGGCGCAAGGTCTTCTCAACC	-			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	46	500	0	ENST00000320574.5:c.1719_1747del	p.Val574GlyfsTer14	p.V574Gfs*14	ENST00000320574	NM_006231.2	573	cgGGTTGAGAAGACCTTGCGCCACGCCCTTGag/cgag																																																																														
ERCC5	0	MSKCC	GRCh37	13	103518615	103518615	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	28	254	0	ENST00000355739.4:c.2203G>C	p.Glu735Gln	p.E735Q	ENST00000355739	NM_000123.3	735	Gag/Cag																																																																														
MAPK1	0	MSKCC	GRCh37	22	22153354	22153354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	71	427	0	ENST00000215832.6:c.556G>C	p.Glu186Gln	p.E186Q	ENST00000215832	NM_002745.4	186	Gaa/Caa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134825328	134825328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	70	225	0	ENST00000398015.3:c.844G>A	p.Glu282Lys	p.E282K	ENST00000398015	NM_004441.4	282	Gaa/Aaa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56184158	56184158	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	83	294	0	ENST00000399503.3:c.4363T>C	p.Ser1455Pro	p.S1455P	ENST00000399503	NM_005921.1	1455	Tcc/Ccc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589631	67589632	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATTATATGAAGA			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	165	326	0	ENST00000274335.5:c.1397_1408dupTATATGAAGAAT	p.Leu466_Glu469dup	p.L466_E469dup	ENST00000274335		466	aga/agATTATATGAAGAa																																																																														
ARAF	0	MSKCC	GRCh37	X	47426051	47426051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	124	619	0	ENST00000377045.4:c.571C>T	p.His191Tyr	p.H191Y	ENST00000377045	NM_001654.4	191	Cac/Tac																																																																														
STAG2	0	MSKCC	GRCh37	X	123191766	123191766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	90	381	0	ENST00000218089.9:c.1355G>T	p.Gly452Val	p.G452V	ENST00000218089	NM_001042749.1	452	gGa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0016820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	25	670	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	191	795	1	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	262	500	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	92	399	1				ENST00000310581	NM_198253.2																																																																																
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	180	509	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	20	402	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	195	372	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
JAK1	0	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	93	259	3	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
NF1	0	MSKCC	GRCh37	17	29562734	29562734	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	336	383	0	ENST00000358273.4:c.3814C>T	p.Gln1272Ter	p.Q1272*	ENST00000358273	NM_001042492.2	1272	Cag/Tag																																																																														
SPEN	0	MSKCC	GRCh37	1	16255096	16255096	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	209	728	1	ENST00000375759.3:c.2361A>T	p.Lys787Asn	p.K787N	ENST00000375759	NM_015001.2	787	aaA/aaT																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851361	156851361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	174	780	0	ENST00000524377.1:c.2318G>T	p.Ser773Ile	p.S773I	ENST00000524377	NM_002529.3	773	aGc/aTc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850948	63850948	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	229	756	0	ENST00000279873.7:c.1726G>T	p.Glu576Ter	p.E576*	ENST00000279873	NM_032199.2	576	Gaa/Taa																																																																														
PTEN	0	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	177	520	0	ENST00000371953.3:c.176C>A	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	213	737	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123239530	123239530	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	393	1143	0	ENST00000358487.5:c.2307C>A	p.Tyr769Ter	p.Y769*	ENST00000358487	NM_000141.4	769	taC/taA																																																																														
INPPL1	0	MSKCC	GRCh37	11	71941264	71941264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	229	828	1	ENST00000298229.2:c.1039C>T	p.Arg347Trp	p.R347W	ENST00000298229	NM_001567.3	347	Cgg/Tgg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942155	71942155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	572	1044	3	ENST00000298229.2:c.1419G>T	p.Glu473Asp	p.E473D	ENST00000298229	NM_001567.3	473	gaG/gaT																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195394	102195394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	141	432	0	ENST00000263464.3:c.154C>T	p.Arg52Cys	p.R52C	ENST00000263464	NM_001165.4	52	Cgt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108160347	108160347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	45	415	0	ENST00000278616.4:c.4255C>A	p.Leu1419Ile	p.L1419I	ENST00000278616	NM_000051.3	1419	Ctt/Att																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50488306	50488306	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	72	785	0	ENST00000394963.4:c.1220T>G	p.Phe407Cys	p.F407C	ENST00000394963	NM_003076.4	407	tTt/tGt																																																																														
POLE	0	MSKCC	GRCh37	12	133249857	133249857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	146	477	0	ENST00000320574.5:c.1366G>C	p.Ala456Pro	p.A456P	ENST00000320574	NM_006231.2	456	Gcc/Ccc																																																																														
FLT3	0	MSKCC	GRCh37	13	28611324	28611324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	53	698	0	ENST00000241453.7:c.1307G>T	p.Arg436Ile	p.R436I	ENST00000241453	NM_004119.2	436	aGa/aTa																																																																														
FLT3	0	MSKCC	GRCh37	13	28626787	28626787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	203	583	0	ENST00000241453.7:c.509G>T	p.Arg170Ile	p.R170I	ENST00000241453	NM_004119.2	170	aGa/aTa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914745	32914745	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	106	863	0	ENST00000380152.3:c.6253T>G	p.Leu2085Val	p.L2085V	ENST00000380152		2085	Tta/Gta																																																																														
NTRK3	0	MSKCC	GRCh37	15	88726669	88726669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	81	621	0	ENST00000360948.2:c.375G>T	p.Lys125Asn	p.K125N	ENST00000360948	NM_001012338.2	125	aaG/aaT																																																																														
BLM	0	MSKCC	GRCh37	15	91337480	91337480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	206	652	0	ENST00000355112.3:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000355112	NM_000057.2	1035	Gaa/Aaa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781331	3781331	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	310	968	0	ENST00000262367.5:c.5034C>A	p.Phe1678Leu	p.F1678L	ENST00000262367	NM_004380.2	1678	ttC/ttA																																																																														
CREBBP	0	MSKCC	GRCh37	16	3832852	3832852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	51	563	0	ENST00000262367.5:c.1406C>A	p.Ser469Tyr	p.S469Y	ENST00000262367	NM_004380.2	469	tCt/tAt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923366	9923366	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	91	694	0	ENST00000330684.3:c.1921T>G	p.Phe641Val	p.F641V	ENST00000330684	NM_001134407.1	641	Ttc/Gtc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032064	10032064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	59	665	3	ENST00000330684.3:c.759C>A	p.Phe253Leu	p.F253L	ENST00000330684	NM_001134407.1	253	ttC/ttA																																																																														
PALB2	0	MSKCC	GRCh37	16	23646762	23646762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	314	931	1	ENST00000261584.4:c.1105C>A	p.Leu369Ile	p.L369I	ENST00000261584	NM_024675.3	369	Ctt/Att																																																																														
PLCG2	0	MSKCC	GRCh37	16	81819546	81819546	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	77	202	0	ENST00000359376.3:c.-47-2A>C		p.X16_splice	ENST00000359376	NM_002661.3	16																																																																															
ANKRD11	0	MSKCC	GRCh37	16	89348354	89348354	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1191	99	1013	0	ENST00000301030.4:c.4596G>T	p.Glu1532Asp	p.E1532D	ENST00000301030	NM_001256183.1	1532	gaG/gaT																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7979656	7979656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	30	495	0	ENST00000319144.4:c.1369T>C	p.Ser457Pro	p.S457P	ENST00000319144	NM_001139.2	457	Tcc/Ccc																																																																														
SUZ12	0	MSKCC	GRCh37	17	30325762	30325762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	203	610	1	ENST00000322652.5:c.1960C>T	p.Arg654Ter	p.R654*	ENST00000322652	NM_015355.2	654	Cga/Tga																																																																														
SPOP	0	MSKCC	GRCh37	17	47696461	47696461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	194	617	0	ENST00000347630.2:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000347630	NM_001007230.1	121	cGg/cAg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696462	47696462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	205	610	1	ENST00000347630.2:c.361C>T	p.Arg121Trp	p.R121W	ENST00000347630	NM_001007230.1	121	Cgg/Tgg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212215	36212215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	245	875	0	ENST00000222270.7:c.1966G>A	p.Glu656Lys	p.E656K	ENST00000222270	NM_014727.1	656	Gaa/Aaa																																																																														
MSH6	0	MSKCC	GRCh37	2	48027541	48027541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	132	459	1	ENST00000234420.5:c.2419G>A	p.Glu807Lys	p.E807K	ENST00000234420	NM_000179.2	807	Gaa/Aaa																																																																														
CASP8	0	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1218	125	1025	0	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa																																																																														
ERG	0	MSKCC	GRCh37	21	39762950	39762950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	198	735	2	ENST00000288319.7:c.886C>A	p.Leu296Ile	p.L296I	ENST00000288319	NM_182918.3	296	Ctt/Att																																																																														
CHEK2	0	MSKCC	GRCh37	22	29092909	29092909	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	74	882	0	ENST00000328354.6:c.1075G>T	p.Glu359Ter	p.E359*	ENST00000328354	NM_007194.3	359	Gaa/Taa																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	211	605	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713129	30713129	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	52	419	0	ENST00000359013.4:c.530-1G>T		p.X177_splice	ENST00000359013	NM_001024847.2	177																																																																															
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	122	410	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47163797	47163797	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	189	592	0	ENST00000409792.3:c.2329G>T	p.Glu777Ter	p.E777*	ENST00000409792	NM_014159.6	777	Gaa/Taa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259477	89259477	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200567888		P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	192	561	0	ENST00000336596.2:c.621G>T	p.Lys207Asn	p.K207N	ENST00000336596	NM_005233.5	207	aaG/aaT																																																																														
TP63	0	MSKCC	GRCh37	3	189526268	189526268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	79	744	4	ENST00000264731.3:c.532G>A	p.Asp178Asn	p.D178N	ENST00000264731	NM_003722.4	178	Gac/Aac																																																																														
KIT	0	MSKCC	GRCh37	4	55573317	55573317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	286	809	1	ENST00000288135.5:c.979G>A	p.Asp327Asn	p.D327N	ENST00000288135	NM_000222.2	327	Gat/Aat																																																																														
KDR	0	MSKCC	GRCh37	4	55958799	55958799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	301	926	0	ENST00000263923.4:c.3054C>A	p.Phe1018Leu	p.F1018L	ENST00000263923	NM_002253.2	1018	ttC/ttA																																																																														
EPHA5	0	MSKCC	GRCh37	4	66189873	66189873	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	76	650	0	ENST00000273854.3:c.3073G>T	p.Glu1025Ter	p.E1025*	ENST00000273854	NM_004439.5	1025	Gaa/Taa																																																																														
FAT1	0	MSKCC	GRCh37	4	187538912	187538912	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201085583		P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	148	495	0	ENST00000441802.2:c.8828C>T	p.Thr2943Met	p.T2943M	ENST00000441802	NM_005245.3	2943	aCg/aTg																																																																														
RASA1	0	MSKCC	GRCh37	5	86672800	86672800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	154	416	0	ENST00000274376.6:c.2287G>A	p.Glu763Lys	p.E763K	ENST00000274376	NM_002890.2	763	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112154933	112154933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	116	786	1	ENST00000257430.4:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000257430	NM_000038.5	402	Cgt/Tgt																																																																														
NSD1	0	MSKCC	GRCh37	5	176722165	176722165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	162	585	0	ENST00000439151.2:c.7796C>A	p.Ser2599Tyr	p.S2599Y	ENST00000439151	NM_022455.4	2599	tCt/tAt																																																																														
PTP4A1	0	MSKCC	GRCh37	6	64286880	64286880	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	249	751	0	ENST00000370651.3:c.95A>C	p.Lys32Thr	p.K32T	ENST00000370651	NM_003463.4	32	aAa/aCa																																																																														
LATS1	0	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	254	845	0	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106522565	106522565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	153	432	0	ENST00000359195.3:c.2542C>A	p.Leu848Ile	p.L848I	ENST00000359195	NM_002649.2	848	Cta/Ata																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187329	38187329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	240	723	2	ENST00000317025.8:c.1148G>A	p.Arg383Gln	p.R383Q	ENST00000317025	NM_023034.1	383	cGa/cAa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87322770	87322770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	204	562	1	ENST00000277120.3:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000277120		124	cGa/cAa																																																																														
TSC1	0	MSKCC	GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	287	918	1	ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15827432	15827432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	239	777	0	ENST00000307771.7:c.548T>C	p.Phe183Ser	p.F183S	ENST00000307771	NM_005089.3	183	tTt/tCt																																																																														
MED12	0	MSKCC	GRCh37	X	70355017	70355017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	86	884	1	ENST00000374080.3:c.4939G>T	p.Asp1647Tyr	p.D1647Y	ENST00000374080		1647	Gat/Tat																																																																														
ATRX	0	MSKCC	GRCh37	X	76937401	76937401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	219	785	0	ENST00000373344.5:c.3347C>A	p.Ser1116Tyr	p.S1116Y	ENST00000373344	NM_000489.3	1116	tCc/tAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76938229	76938229	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs191682105		P-0016825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	295	872	2	ENST00000373344.5:c.2519G>T	p.Arg840Ile	p.R840I	ENST00000373344	NM_000489.3	840	aGa/aTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	102	403	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0016826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	2357	411	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TSC1	0	MSKCC	GRCh37	9	135779172	135779172	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	270	354	0	ENST00000298552.3:c.2074C>T	p.Arg692Ter	p.R692*	ENST00000298552	NM_001162426.1	692	Cga/Tga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32930727	32930727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	359	371	0	ENST00000380152.3:c.7598C>T	p.Ser2533Phe	p.S2533F	ENST00000380152		2533	tCt/tTt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44937643	44937643	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0016826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	573	248	0	ENST00000377967.4:c.2833-2A>G		p.X945_splice	ENST00000377967	NM_021140.2	945																																																																															
TP53	0	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	315	501	0	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA																																																																														
EPHA5	0	MSKCC	GRCh37	4	66286205	66286205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	197	324	0	ENST00000273854.3:c.1481G>A	p.Arg494His	p.R494H	ENST00000273854	NM_004439.5	494	cGt/cAt																																																																														
PRKD1	0	MSKCC	GRCh37	14	30107909	30107909	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	29	429	0	ENST00000331968.5:c.898C>T	p.Gln300Ter	p.Q300*	ENST00000331968	NM_002742.2	300	Cag/Tag																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091740	29091740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	277	265	0	ENST00000328354.6:c.1217G>T	p.Arg406Leu	p.R406L	ENST00000328354	NM_007194.3	406	cGt/cTt																																																																														
TP63	0	MSKCC	GRCh37	3	189612039	189612039	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2660	904	447	0	ENST00000264731.3:c.1791C>G	p.Ile597Met	p.I597M	ENST00000264731	NM_003722.4	597	atC/atG																																																																														
TP63	0	MSKCC	GRCh37	3	189612080	189612080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2855	1002	493	0	ENST00000264731.3:c.1832C>G	p.Ser611Cys	p.S611C	ENST00000264731	NM_003722.4	611	tCc/tGc																																																																														
FLT4	0	MSKCC	GRCh37	5	180057553	180057553	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0016827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	81	399	0	ENST00000261937.6:c.400+2T>C		p.X134_splice	ENST00000261937	NM_182925.4	134																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	438	869	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	540	726	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	309	696	2	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65339175	65339175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180823763		P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	212	420	0	ENST00000342505.4:c.361G>A	p.Asp121Asn	p.D121N	ENST00000342505	NM_002227.2	121	Gac/Aac																																																																														
PTPRS	0	MSKCC	GRCh37	19	5221084	5221084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	148	520	0	ENST00000357368.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000357368	NM_002850.3	1128	Gtc/Atc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435658	18435658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143896492		P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	110	354	0	ENST00000266497.5:c.643G>A	p.Gly215Arg	p.G215R	ENST00000266497		215	Gga/Aga																																																																														
APC	0	MSKCC	GRCh37	5	112174736	112174736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	201	394	0	ENST00000257430.4:c.3445G>T	p.Glu1149Ter	p.E1149*	ENST00000257430	NM_000038.5	1149	Gaa/Taa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444231	49444231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	171	892	0	ENST00000301067.7:c.3140T>C	p.Leu1047Pro	p.L1047P	ENST00000301067	NM_003482.3	1047	cTa/cCa																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965326	25965326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	57	531	0	ENST00000435504.4:c.3880C>T	p.Leu1294Phe	p.L1294F	ENST00000435504		1294	Ctt/Ttt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096526	178096526	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	36	292	1	ENST00000397062.3:c.805A>T	p.Asn269Tyr	p.N269Y	ENST00000397062	NM_006164.4	269	Aac/Tac																																																																														
MITF	0	MSKCC	GRCh37	3	69998247	69998247	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	269	741	0	ENST00000352241.4:c.808C>G	p.Leu270Val	p.L270V	ENST00000352241	NM_198159.2	270	Ctg/Gtg																																																																														
APC	0	MSKCC	GRCh37	5	112175575	112175575	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	152	528	0	ENST00000257430.4:c.4284del	p.Gln1429LysfsTer44	p.Q1429Kfs*44	ENST00000257430	NM_000038.5	1428	ggA/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	285	480	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	172	560	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
FANCA	0	MSKCC	GRCh37	16	89805287	89805287	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	G			P-0016831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	81	374	0	ENST00000389301.3:c.4260+3A>C		p.X1420_splice	ENST00000389301	NM_000135.2	1420																																																																															
KMT2C	0	MSKCC	GRCh37	7	151845721	151845721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	219	494	0	ENST00000262189.6:c.13291A>G	p.Asn4431Asp	p.N4431D	ENST00000262189	NM_170606.2	4431	Aac/Gac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0016835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	1552	398	1	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
NUP93	0	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	198	256	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729968	30729968	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	281	268	0	ENST00000359013.4:c.1564C>T	p.Arg522Ter	p.R522*	ENST00000359013	NM_001024847.2	522	Cga/Tga																																																																														
STAT3	0	MSKCC	GRCh37	17	40481581	40481581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	306	310	0	ENST00000264657.5:c.1224C>G	p.Phe408Leu	p.F408L	ENST00000264657	NM_139276.2	408	ttC/ttG																																																																														
PREX2	0	MSKCC	GRCh37	8	69058536	69058536	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61753703		P-0016835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	505	494	2	ENST00000288368.4:c.4180C>T	p.Arg1394Trp	p.R1394W	ENST00000288368	NM_024870.2	1394	Cgg/Tgg																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46527686	46527686	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	402	380	1	ENST00000262741.5:c.679G>T	p.Glu227Ter	p.E227*	ENST00000262741	NM_003629.3	227	Gaa/Taa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53224507	53224507	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	388	484	0	ENST00000375401.3:c.3206G>C	p.Arg1069Thr	p.R1069T	ENST00000375401	NM_004187.3	1069	aGa/aCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	322	599	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	74	423	0				ENST00000310581	NM_198253.2																																																																																
ATM	0	MSKCC	GRCh37	11	108122754	108122754	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	186	405	1	ENST00000278616.4:c.1798del	p.His600ThrfsTer14	p.H600Tfs*14	ENST00000278616	NM_000051.3	600	Cac/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	137	437	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	56	433	2	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
FLT1	0	MSKCC	GRCh37	13	29041165	29041165	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	77	542	0	ENST00000282397.4:c.263del	p.Phe88SerfsTer5	p.F88Sfs*5	ENST00000282397	NM_002019.4	88	tTc/tc																																																																														
CBFB	0	MSKCC	GRCh37	16	67070573	67070573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	96	284	0	ENST00000412916.2:c.197del	p.Leu66ProfsTer23	p.L66Pfs*23	ENST00000412916		66	cTc/cc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729858	41729858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	85	348	0	ENST00000242208.4:c.671C>A	p.Ser224Tyr	p.S224Y	ENST00000242208	NM_002192.2	224	tCc/tAc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878375	151878375	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	100	437	0	ENST00000262189.6:c.6570del	p.Phe2190LeufsTer5	p.F2190Lfs*5	ENST00000262189	NM_170606.2	2190	ttT/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0016841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	74	432	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
CDH1	0	MSKCC	GRCh37	16	68842603	68842603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	99	496	0	ENST00000261769.5:c.539C>T	p.Ser180Phe	p.S180F	ENST00000261769	NM_004360.3	180	tCc/tTc																																																																														
CDK12	0	MSKCC	GRCh37	17	37627742	37627742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	47	740	0	ENST00000447079.4:c.1657C>T	p.Pro553Ser	p.P553S	ENST00000447079	NM_015083.1	553	Cct/Tct																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212134	5212134	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	60	534	4	ENST00000357368.4:c.4897C>T	p.Gln1633Ter	p.Q1633*	ENST00000357368	NM_002850.3	1633	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	274	356	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857895	9857895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	118	334	1	ENST00000330684.3:c.3506G>A	p.Arg1169Gln	p.R1169Q	ENST00000330684	NM_001134407.1	1169	cGg/cAg																																																																														
TET2	0	MSKCC	GRCh37	4	106164085	106164086	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	50	212	0	ENST00000380013.4:c.3594+2dupT		p.X1198_splice	ENST00000380013	NM_001127208.2	1198																																																																															
ERRFI1	0	MSKCC	GRCh37	1	8075367	8075367	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	38	158	0	ENST00000377482.5:c.202+1G>T		p.X68_splice	ENST00000377482	NM_018948.3	68																																																																															
INPPL1	0	MSKCC	GRCh37	11	71943361	71943361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	75	350	0	ENST00000298229.2:c.1693G>A	p.Gly565Arg	p.G565R	ENST00000298229	NM_001567.3	565	Gga/Aga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779323	3779323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	97	275	0	ENST00000262367.5:c.5725C>T	p.Pro1909Ser	p.P1909S	ENST00000262367	NM_004380.2	1909	Ccc/Tcc																																																																														
STAT3	0	MSKCC	GRCh37	17	40469210	40469210	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	84	235	0	ENST00000264657.5:c.2134T>G	p.Cys712Gly	p.C712G	ENST00000264657	NM_139276.2	712	Tgt/Ggt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	103	756	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	75	625	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	111	634	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	64	568	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	119	752	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
MUTYH	0	MSKCC	GRCh37	1	45805907	45805907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	96	547	3	ENST00000372115.3:c.20G>A	p.Arg7His	p.R7H	ENST00000372115	NM_001048171.1	7	cGc/cAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5243984	5243984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	46	534	2	ENST00000357368.4:c.1498C>T	p.Arg500Trp	p.R500W	ENST00000357368	NM_002850.3	500	Cgg/Tgg																																																																														
MITF	0	MSKCC	GRCh37	3	69928292	69928292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	107	473	0	ENST00000352241.4:c.112G>A	p.Ala38Thr	p.A38T	ENST00000352241	NM_198159.2	38	Gcc/Acc																																																																														
HGF	0	MSKCC	GRCh37	7	81358979	81358979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	92	726	3	ENST00000222390.5:c.982C>T	p.Arg328Cys	p.R328C	ENST00000222390	NM_000601.4	328	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	107	638	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249037	55249038	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	328	526	2	ENST00000275493.2:c.2335_2336delinsTT	p.Gly779Phe	p.G779F	ENST00000275493	NM_005228.3	779	GGc/TTc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56189379	56189379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	110	581	0	ENST00000399503.3:c.4411C>A	p.Pro1471Thr	p.P1471T	ENST00000399503	NM_005921.1	1471	Cca/Aca																																																																														
BCL10	0	MSKCC	GRCh37	1	85733341	85733341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	170	631	1	ENST00000370580.1:c.671C>T	p.Pro224Leu	p.P224L	ENST00000370580	NM_003921.4	224	cCc/cTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9892140	9892140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	97	582	0	ENST00000330684.3:c.2350G>T	p.Gly784Cys	p.G784C	ENST00000330684	NM_001134407.1	784	Ggt/Tgt																																																																														
ALK	0	MSKCC	GRCh37	2	29754901	29754901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	33	347	0	ENST00000389048.3:c.1034G>A	p.Cys345Tyr	p.C345Y	ENST00000389048	NM_004304.4	345	tGc/tAc																																																																														
ALK	0	MSKCC	GRCh37	2	29917835	29917835	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	124	717	1	ENST00000389048.3:c.833del	p.Pro278LeufsTer57	p.P278Lfs*57	ENST00000389048	NM_004304.4	278	cCt/ct																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185161387	185161387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	96	577	1	ENST00000265026.3:c.814C>T	p.Leu272Phe	p.L272F	ENST00000265026	NM_004721.4	272	Ctc/Ttc																																																																														
HGF	0	MSKCC	GRCh37	7	81358956	81358956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	126	555	0	ENST00000222390.5:c.1005C>A	p.His335Gln	p.H335Q	ENST00000222390	NM_000601.4	335	caC/caA																																																																														
PREX2	0	MSKCC	GRCh37	8	69020347	69020347	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	170	465	0	ENST00000288368.4:c.2719T>A	p.Ser907Thr	p.S907T	ENST00000288368	NM_024870.2	907	Tct/Act																																																																														
RB1	0	MSKCC	GRCh37	13	49033823	49033823	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	78	372	2	ENST00000267163.4:c.1961-1G>T		p.X654_splice	ENST00000267163	NM_000321.2	654																																																																															
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0016854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	67	518	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
NUF2	0	MSKCC	GRCh37	1	163309249	163309250	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0016854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	41	516	0	ENST00000271452.3:c.588_589delinsCT	p.Gln196_Asp197delinsHisTyr	p.Q196_D197delinsHY	ENST00000271452	NM_145697.2	196	caGGat/caCTat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425365	49425365	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	78	626	0	ENST00000301067.7:c.13123G>T	p.Gly4375Ter	p.G4375*	ENST00000301067	NM_003482.3	4375	Gga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	48916758	48916759	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAC			P-0016854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	44	543	0	ENST00000267163.4:c.289_292dup	p.Leu98ArgfsTer13	p.L98Rfs*13	ENST00000267163	NM_000321.2	96	-/GAAC																																																																														
IRS2	0	MSKCC	GRCh37	13	110438208	110438208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	26	150	0	ENST00000375856.3:c.193G>A	p.Gly65Arg	p.G65R	ENST00000375856	NM_003749.2	65	Ggg/Agg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3795343	3795343	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	101	561	0	ENST00000262367.5:c.3849C>G	p.Cys1283Trp	p.C1283W	ENST00000262367	NM_004380.2	1283	tgC/tgG																																																																														
FANCA	0	MSKCC	GRCh37	16	89845391	89845391	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	50	702	0	ENST00000389301.3:c.1736A>C	p.Tyr579Ser	p.Y579S	ENST00000389301	NM_000135.2	579	tAc/tCc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5221122	5221122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	63	520	0	ENST00000357368.4:c.3344C>T	p.Ala1115Val	p.A1115V	ENST00000357368	NM_002850.3	1115	gCc/gTc																																																																														
MST1R	0	MSKCC	GRCh37	3	49935998	49935998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	95	749	0	ENST00000296474.3:c.1672T>A	p.Cys558Ser	p.C558S	ENST00000296474	NM_002447.2	558	Tgt/Agt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8331646	8331646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	72	526	0	ENST00000356435.5:c.5470A>G	p.Ile1824Val	p.I1824V	ENST00000356435		1824	Atc/Gtc																																																																														
XIAP	0	MSKCC	GRCh37	X	123019658	123019658	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	67	579	0	ENST00000355640.3:c.146G>C	p.Arg49Pro	p.R49P	ENST00000355640		49	cGa/cCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	53	220	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	153	495	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426688	49426689	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AG			P-0016855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	67	162	0	ENST00000301067.7:c.11799_11800delinsCT	p.Gln3933_Gln3934delinsHisTer	p.Q3933_Q3934delinsH*	ENST00000301067	NM_003482.3	3933	caGCag/caCTag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49447802	49447802	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	176	482	0	ENST00000301067.7:c.632del	p.Gln211ArgfsTer50	p.Q211Rfs*50	ENST00000301067	NM_003482.3	211	cAg/cg																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66679731	66679731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	85	532	0	ENST00000307102.5:c.46G>A	p.Asp16Asn	p.D16N	ENST00000307102	NM_002755.3	16	Gac/Aac																																																																														
CYLD	0	MSKCC	GRCh37	16	50818298	50818298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	124	590	0	ENST00000398568.2:c.1876G>A	p.Asp626Asn	p.D626N	ENST00000398568	NM_001042412.1	626	Gat/Aat																																																																														
MSH6	0	MSKCC	GRCh37	2	48026284	48026284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	80	296	0	ENST00000234420.5:c.1162C>T	p.His388Tyr	p.H388Y	ENST00000234420	NM_000179.2	388	Cac/Tac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3820724	3820725	+	frameshift_variant	Frame_Shift_Ins	INS	AG	AG	GCT			P-0016855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1284	238	760	0	ENST00000262367.5:c.2726_2727delinsAGC	p.Ala909GlufsTer61	p.A909Efs*61	ENST00000262367	NM_004380.2	909	gCT/gAGC																																																																														
TBX3	0	MSKCC	GRCh37	12	115114238	115114241	+	missense_variant	Missense_Mutation	ONP	CATC	CATC	TATT			P-0016855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	188	638	0	ENST00000257566.3:c.976_979delinsAATA	p.Asp326_Glu327delinsAsnLys	p.D326_E327delinsNK	ENST00000257566	NM_016569.3	326	GATGaa/AATAaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	69	547	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68862174	68862174	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	50	702	0	ENST00000261769.5:c.2262del	p.Tyr755MetfsTer15	p.Y755Mfs*15	ENST00000261769	NM_004360.3	754	taC/ta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	436	625	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343903	118343903	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	146	364	0	ENST00000534358.1:c.2029C>T	p.Arg677Ter	p.R677*	ENST00000534358	NM_005933.3	677	Cga/Tga																																																																														
PLCG2	0	MSKCC	GRCh37	16	81925143	81925143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	84	461	1	ENST00000359376.3:c.934C>A	p.Gln312Lys	p.Q312K	ENST00000359376	NM_002661.3	312	Cag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	276	520	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
CD79B	0	MSKCC	GRCh37	17	62007713	62007713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	116	251	0	ENST00000392795.3:c.154C>G	p.Arg52Gly	p.R52G	ENST00000392795	NM_001039933.1	52	Cgt/Ggt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222767	5222851	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCGCACTTGGAGGTCATAGGCCGTGTCGGGCTTCAGGCCCTGCAGCGTGAGCGCGTTCTCCGCGCCCGGCTCAGCCGCTGCC	GGCTCGCACTTGGAGGTCATAGGCCGTGTCGGGCTTCAGGCCCTGCAGCGTGAGCGCGTTCTCCGCGCCCGGCTCAGCCGCTGCC	-			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	61	522	1	ENST00000357368.4:c.2952_3036del	p.Ala985ThrfsTer30	p.A985Tfs*30	ENST00000357368	NM_002850.3	984	ccGGCAGCGGCTGAGCCGGGCGCGGAGAACGCGCTCACGCTGCAGGGCCTGAAGCCCGACACGGCCTATGACCTCCAAGTGCGAGCC/cc																																																																														
EP300	0	MSKCC	GRCh37	22	41566556	41566556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	64	319	2	ENST00000263253.7:c.4433G>A	p.Arg1478His	p.R1478H	ENST00000263253	NM_001429.3	1478	cGt/cAt																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056638	26056638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	26	152	0	ENST00000343677.2:c.19G>A	p.Ala7Thr	p.A7T	ENST00000343677	NM_005319.3	7	Gcc/Acc																																																																														
HGF	0	MSKCC	GRCh37	7	81359060	81359060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	95	419	0	ENST00000222390.5:c.901G>A	p.Glu301Lys	p.E301K	ENST00000222390	NM_000601.4	301	Gaa/Aaa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508083	106508083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	29	141	0	ENST00000359195.3:c.77G>A	p.Arg26His	p.R26H	ENST00000359195	NM_002649.2	26	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	170	636	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	57	517	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991910	72991910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	41	391	2	ENST00000268489.5:c.2135G>T	p.Arg712Leu	p.R712L	ENST00000268489	NM_006885.3	712	cGg/cTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100073	27100074	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CG	CG	TT			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	44	492	1	ENST00000324856.7:c.3869_3870delinsTT	p.Thr1290Ile	p.T1290I	ENST00000324856	NM_006015.4	1290	aCG/aTT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106724	27106724	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	52	490	0	ENST00000324856.7:c.6337del	p.Ser2113ProfsTer22	p.S2113Pfs*22	ENST00000324856	NM_006015.4	2112	cTt/ct																																																																														
MPL	0	MSKCC	GRCh37	1	43805047	43805047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	51	536	1	ENST00000372470.3:c.497G>A	p.Arg166Lys	p.R166K	ENST00000372470	NM_005373.2	166	aGg/aAg																																																																														
PGR	0	MSKCC	GRCh37	11	100999596	100999597	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	93	640	1	ENST00000325455.5:c.205_206delinsAA	p.Pro69Asn	p.P69N	ENST00000325455	NM_001202474.3	69	CCc/AAc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18641541	18641541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	53	409	0	ENST00000266497.5:c.2540C>A	p.Ser847Tyr	p.S847Y	ENST00000266497		847	tCt/tAt																																																																														
ARID2	0	MSKCC	GRCh37	12	46230371	46230371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	65	262	0	ENST00000334344.6:c.706-1G>A		p.X236_splice	ENST00000334344	NM_152641.2	236																																																																															
AXIN1	0	MSKCC	GRCh37	16	396242	396242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	70	470	4	ENST00000262320.3:c.784G>A	p.Ala262Thr	p.A262T	ENST00000262320	NM_003502.3	262	Gct/Act																																																																														
PLCG2	0	MSKCC	GRCh37	16	81954848	81954848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	65	548	0	ENST00000359376.3:c.2281G>C	p.Asp761His	p.D761H	ENST00000359376	NM_002661.3	761	Gat/Cat																																																																														
NCOA3	0	MSKCC	GRCh37	20	46281148	46281148	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	35	365	1	ENST00000371998.3:c.3947-2A>T		p.X1316_splice	ENST00000371998		1316																																																																															
EPHB1	0	MSKCC	GRCh37	3	134670687	134670687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	56	448	2	ENST00000398015.3:c.598G>T	p.Val200Leu	p.V200L	ENST00000398015	NM_004441.4	200	Gtg/Ttg																																																																														
TET2	0	MSKCC	GRCh37	4	106196606	106196606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	59	410	0	ENST00000380013.4:c.4939G>T	p.Gly1647Cys	p.G1647C	ENST00000380013	NM_001127208.2	1647	Ggt/Tgt																																																																														
NSD1	0	MSKCC	GRCh37	5	176639144	176639144	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	106	495	0	ENST00000439151.2:c.3744A>T	p.Glu1248Asp	p.E1248D	ENST00000439151	NM_022455.4	1248	gaA/gaT																																																																														
NF1	0	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0016868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	354	549	1	ENST00000358273.4:c.6852_6855delTTAC	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	196	541	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MTOR	0	MSKCC	GRCh37	1	11259353	11259353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	67	437	0	ENST00000361445.4:c.4215G>C	p.Gln1405His	p.Q1405H	ENST00000361445	NM_004958.3	1405	caG/caC																																																																														
TP53	0	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	162	577	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120468258	120468258	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	78	391	0	ENST00000256646.2:c.4181A>T	p.Gln1394Leu	p.Q1394L	ENST00000256646	NM_024408.3	1394	cAg/cTg																																																																														
SESN3	0	MSKCC	GRCh37	11	94906474	94906474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	67	442	0	ENST00000536441.1:c.1424G>C	p.Arg475Pro	p.R475P	ENST00000536441	NM_144665.3	475	cGa/cCa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88483937	88483937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	60	466	0	ENST00000360948.2:c.1633G>A	p.Gly545Ser	p.G545S	ENST00000360948	NM_001012338.2	545	Ggt/Agt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99451967	99451967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	97	407	0	ENST00000268035.6:c.1301G>T	p.Trp434Leu	p.W434L	ENST00000268035	NM_000875.3	434	tGg/tTg																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7978963	7978963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	75	502	0	ENST00000319144.4:c.1604C>G	p.Ser535Cys	p.S535C	ENST00000319144	NM_001139.2	535	tCt/tGt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243027	41243027	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	91	537	0	ENST00000357654.3:c.4119G>C	p.Glu1373Asp	p.E1373D	ENST00000357654	NM_007294.3	1373	gaG/gaC																																																																														
SOX9	0	MSKCC	GRCh37	17	70120284	70120284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	107	751	1	ENST00000245479.2:c.1286G>T	p.Ser429Ile	p.S429I	ENST00000245479	NM_000346.3	429	aGc/aTc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602698	10602698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	162	612	3	ENST00000171111.5:c.880G>T	p.Asp294Tyr	p.D294Y	ENST00000171111	NM_203500.1	294	Gac/Tac																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521695	89521695	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	86	450	0	ENST00000336596.2:c.2772G>T	p.Trp924Cys	p.W924C	ENST00000336596	NM_005233.5	924	tgG/tgT																																																																														
KDR	0	MSKCC	GRCh37	4	55946160	55946160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	47	292	0	ENST00000263923.4:c.4019C>A	p.Ala1340Asp	p.A1340D	ENST00000263923	NM_002253.2	1340	gCc/gAc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217211	66217211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	66	445	0	ENST00000273854.3:c.2404G>T	p.Ala802Ser	p.A802S	ENST00000273854	NM_004439.5	802	Gct/Tct																																																																														
TERT	0	MSKCC	GRCh37	5	1280292	1280292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	194	638	0	ENST00000310581.5:c.1931C>A	p.Thr644Lys	p.T644K	ENST00000310581	NM_198253.2	644	aCg/aAg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38959941	38959941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	51	314	0	ENST00000357387.3:c.1991G>T	p.Gly664Val	p.G664V	ENST00000357387	NM_152756.3	664	gGa/gTa																																																																														
E2F3	0	MSKCC	GRCh37	6	20490443	20490443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	239	446	0	ENST00000346618.3:c.1180A>G	p.Met394Val	p.M394V	ENST00000346618	NM_001949.4	394	Atg/Gtg																																																																														
SMO	0	MSKCC	GRCh37	7	128846097	128846097	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	196	623	0	ENST00000249373.3:c.1027T>G	p.Phe343Val	p.F343V	ENST00000249373	NM_005631.4	343	Ttc/Gtc																																																																														
BRAF	0	MSKCC	GRCh37	7	140501356	140501356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	44	352	0	ENST00000288602.6:c.716G>T	p.Arg239Leu	p.R239L	ENST00000288602	NM_004333.4	239	cGa/cTa																																																																														
ATRX	0	MSKCC	GRCh37	X	76937961	76937961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	140	237	0	ENST00000373344.5:c.2787G>C	p.Gln929His	p.Q929H	ENST00000373344	NM_000489.3	929	caG/caC																																																																														
ATRX	0	MSKCC	GRCh37	X	76938232	76938232	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	133	273	0	ENST00000373344.5:c.2516A>C	p.Lys839Thr	p.K839T	ENST00000373344	NM_000489.3	839	aAa/aCa																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	180	476	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0016872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	528	487	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0016872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	171	419	1	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa																																																																														
RBM10	0	MSKCC	GRCh37	X	47045006	47045006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	190	261	0	ENST00000329236.7:c.2098C>T	p.Gln700Ter	p.Q700*	ENST00000329236	NM_001204466.1	700	Cag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151851501	151851502	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	132	319	0	ENST00000262189.6:c.11989dup	p.Thr3997AsnfsTer3	p.T3997Nfs*3	ENST00000262189	NM_170606.2	3997	act/aAct																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486271	8486271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	109	288	0	ENST00000356435.5:c.2546C>A	p.Thr849Lys	p.T849K	ENST00000356435		849	aCa/aAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0016875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	50	479	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	73	529	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt																																																																														
CIC	0	MSKCC	GRCh37	19	42799156	42799156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	62	502	0	ENST00000575354.2:c.4640C>T	p.Pro1547Leu	p.P1547L	ENST00000575354	NM_015125.3	1547	cCt/cTt																																																																														
SPEN	0	MSKCC	GRCh37	1	16261381	16261382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0016875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	62	435	0	ENST00000375759.3:c.8647_8648dup	p.Ser2884IlefsTer6	p.S2884Ifs*6	ENST00000375759	NM_015001.2	2882	-/CA																																																																														
CARM1	0	MSKCC	GRCh37	19	11032332	11032332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	62	441	0	ENST00000327064.4:c.1726G>A	p.Ala576Thr	p.A576T	ENST00000327064	NM_199141.1	576	Gcc/Acc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93973618	93973618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	39	415	0	ENST00000369303.4:c.1758C>A	p.Ser586Arg	p.S586R	ENST00000369303	NM_004440.3	586	agC/agA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0016876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	114	425	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061185	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCACTTGAAGCGCTTCTG	GCACTTGAAGCGCTTCTG	-			P-0016876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	93	252	0	ENST00000250448.2:c.787_804del	p.Gln263_Cys268del	p.Q263_C268del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGC/-																																																																														
TP53	0	MSKCC	GRCh37	17	7577567	7577567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	320	379	0	ENST00000269305.4:c.714T>G	p.Cys238Trp	p.C238W	ENST00000269305	NM_001126112.2	238	tgT/tgG																																																																														
NUP93	0	MSKCC	GRCh37	16	56868157	56868157	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	81	366	0	ENST00000308159.5:c.1655A>G	p.Tyr552Cys	p.Y552C	ENST00000308159	NM_014669.4	552	tAt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	132	313	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	25	355	0	ENST00000288602.6:c.1790T>G	p.Leu597Arg	p.L597R	ENST00000288602	NM_004333.4	597	cTa/cGa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32900715	32900715	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	164	415	0	ENST00000380152.3:c.596C>G	p.Ala199Gly	p.A199G	ENST00000380152		199	gCt/gGt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8340426	8340426	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	299	406	0	ENST00000356435.5:c.5170A>T	p.Thr1724Ser	p.T1724S	ENST00000356435		1724	Acc/Tcc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969494	44969497	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTA	AGTA	-			P-0016883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	576	291	0	ENST00000377967.4:c.4176+3_4176+6del		p.X1392_splice	ENST00000377967	NM_021140.2	1392																																																																															
AR	0	MSKCC	GRCh37	X	66943553	66943553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	358	265	0	ENST00000374690.3:c.2633C>G	p.Thr878Ser	p.T878S	ENST00000374690	NM_000044.3	878	aCt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	340	550	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267481	198267481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	102	503	0	ENST00000335508.6:c.1876A>G	p.Asn626Asp	p.N626D	ENST00000335508	NM_012433.2	626	Aac/Gac																																																																														
MEN1	0	MSKCC	GRCh37	11	64577274	64577275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTCGGC			P-0016888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	157	560	0	ENST00000337652.1:c.307_308insGCCGACC	p.Leu103ArgfsTer16	p.L103Rfs*16	ENST00000337652	NM_130803.2	103	ctg/cGCCGACCtg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18274164	18274164	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	258	715	0	ENST00000222254.8:c.1382A>T	p.Asp461Val	p.D461V	ENST00000222254	NM_005027.3	461	gAc/gTc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38271226	38271226	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2203	154	540	0	ENST00000425967.3:c.2482T>G	p.Ser828Ala	p.S828A	ENST00000425967	NM_001174067.1	828	Tct/Gct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	293	604	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727077	40727077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	11	384	0	ENST00000373198.4:c.3887A>T	p.Glu1296Val	p.E1296V	ENST00000373198	NM_133170.3	1296	gAg/gTg																																																																														
ATM	0	MSKCC	GRCh37	11	108098600	108098600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	104	242	2	ENST00000278616.4:c.170G>T	p.Trp57Leu	p.W57L	ENST00000278616	NM_000051.3	57	tGg/tTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16257336	16257336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	65	589	1	ENST00000375759.3:c.4601C>T	p.Ser1534Leu	p.S1534L	ENST00000375759	NM_015001.2	1534	tCa/tTa																																																																														
GATA3	0	MSKCC	GRCh37	10	8115980	8115980	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	41	208	0	ENST00000346208.3:c.1326G>C	p.Met442Ile	p.M442I	ENST00000346208		442	atG/atC																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426895	49426895	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	31	262	0	ENST00000301067.7:c.11593C>T	p.Gln3865Ter	p.Q3865*	ENST00000301067	NM_003482.3	3865	Caa/Taa																																																																														
MGA	0	MSKCC	GRCh37	15	41961579	41961579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	42	414	0	ENST00000219905.7:c.487C>T	p.Pro163Ser	p.P163S	ENST00000219905	NM_001164273.1	163	Cct/Tct																																																																														
NTRK3	0	MSKCC	GRCh37	15	88669511	88669511	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	21	551	0	ENST00000360948.2:c.1387G>T	p.Gly463Ter	p.G463*	ENST00000360948	NM_001012338.2	463	Gga/Tga																																																																														
ASXL1	0	MSKCC	GRCh37	20	31019171	31019171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	101	616	0	ENST00000375687.4:c.766G>T	p.Gly256Trp	p.G256W	ENST00000375687	NM_015338.5	256	Ggg/Tgg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264746	46264746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	33	432	1	ENST00000371998.3:c.1616C>G	p.Ser539Cys	p.S539C	ENST00000371998		539	tCt/tGt																																																																														
SETD2	0	MSKCC	GRCh37	3	47098781	47098782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	98	558	0	ENST00000409792.3:c.6492dup	p.Ala2165CysfsTer19	p.A2165Cfs*19	ENST00000409792	NM_014159.6	2164	-/T																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41748320	41748320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	25	628	0	ENST00000226382.2:c.449G>A	p.Arg150His	p.R150H	ENST00000226382	NM_003924.3	150	cGc/cAc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143007374	143007374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	21	258	0	ENST00000262992.4:c.2410G>C	p.Ala804Pro	p.A804P	ENST00000262992	NM_001101669.1	804	Gca/Cca																																																																														
APC	0	MSKCC	GRCh37	5	112176806	112176806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	39	385	0	ENST00000257430.4:c.5515G>C	p.Ala1839Pro	p.A1839P	ENST00000257430	NM_000038.5	1839	Gct/Cct																																																																														
KDM5C	0	MSKCC	GRCh37	X	53247141	53247167	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCACAATCTGAAAAAACAAGTAGGAA	ACCACAATCTGAAAAAACAAGTAGGAA	-			P-0016891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	36	413	0	ENST00000375401.3:c.352-19_359del		p.X118_splice	ENST00000375401	NM_004187.3	118																																																																															
PTEN	0	MSKCC	GRCh37	10	89692991	89692993	+	missense_variant	Missense_Mutation	ONP	AGG	AGG	TGC			P-0016893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	184	390	0	ENST00000371953.3:c.475_477delinsTGC	p.Arg159Cys	p.R159C	ENST00000371953	NM_000314.4	159	AGG/TGC																																																																														
KIT	0	MSKCC	GRCh37	4	55599320	55599320	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28933969		P-0016894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	387	709	0	ENST00000288135.5:c.2446G>C	p.Asp816His	p.D816H	ENST00000288135	NM_000222.2	816	Gac/Cac																																																																														
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	312	550	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0016894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	240	526	0	ENST00000269305.4:c.559+1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
RB1	0	MSKCC	GRCh37	13	48916829	48916829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	391	618	1	ENST00000267163.4:c.359T>A	p.Leu120Gln	p.L120Q	ENST00000267163	NM_000321.2	120	cTa/cAa																																																																														
MAX	0	MSKCC	GRCh37	14	65544649	65544649	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	331	615	0	ENST00000358664.4:c.277G>C	p.Ala93Pro	p.A93P	ENST00000358664	NM_002382.4	93	Gct/Cct																																																																														
MGA	0	MSKCC	GRCh37	15	42019537	42019537	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	501	844	0	ENST00000219905.7:c.3590del	p.Thr1197MetfsTer2	p.T1197Mfs*2	ENST00000219905	NM_001164273.1	1197	aCt/at																																																																														
JAK1	0	MSKCC	GRCh37	1	65330467	65330468	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0016895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	38	388	0	ENST00000342505.4:c.1176+2dup		p.X392_splice	ENST00000342505	NM_002227.2	392																																																																															
PTEN	0	MSKCC	GRCh37	10	89717715	89717716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0016895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	104	490	1	ENST00000371953.3:c.741_742insAA	p.Pro248AsnfsTer9	p.P248Nfs*9	ENST00000371953	NM_000314.4	247	tta/ttAAa																																																																														
PRDM14	0	MSKCC	GRCh37	8	70971044	70971044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1458	88	834	0	ENST00000276594.2:c.1217G>A	p.Gly406Glu	p.G406E	ENST00000276594	NM_024504.3	406	gGg/gAg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120496232	120496232	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	572	594	1	ENST00000256646.2:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000256646	NM_024408.3	767	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89720699	89720699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	84	134	0	ENST00000371953.3:c.850G>T	p.Glu284Ter	p.E284*	ENST00000371953	NM_000314.4	284	Gag/Tag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247204	153247204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	467	478	1	ENST00000281708.4:c.1598G>T	p.Cys533Phe	p.C533F	ENST00000281708	NM_033632.3	533	tGt/tTt																																																																														
MTOR	0	MSKCC	GRCh37	1	11319430	11319430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	432	418	3	ENST00000361445.4:c.37G>T	p.Ala13Ser	p.A13S	ENST00000361445	NM_004958.3	13	Gcc/Tcc																																																																														
CDC73	0	MSKCC	GRCh37	1	193099303	193099303	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0016898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	235	271	0	ENST00000367435.3:c.238-1G>C		p.X80_splice	ENST00000367435	NM_024529.4	80																																																																															
ARID2	0	MSKCC	GRCh37	12	46254726	46254726	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs77129625		P-0016898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	247	317	0	ENST00000334344.6:c.4916G>T	p.Cys1639Phe	p.C1639F	ENST00000334344	NM_152641.2	1639	tGt/tTt																																																																														
RB1	0	MSKCC	GRCh37	13	48878148	48878148	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	172	138	1	ENST00000267163.4:c.100G>T	p.Glu34Ter	p.E34*	ENST00000267163	NM_000321.2	34	Gag/Tag																																																																														
ERCC4	0	MSKCC	GRCh37	16	14014128	14014128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	505	416	0	ENST00000311895.7:c.106G>T	p.Ala36Ser	p.A36S	ENST00000311895	NM_005236.2	36	Gcc/Tcc																																																																														
FAT1	0	MSKCC	GRCh37	4	187627783	187627783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	314	583	0	ENST00000441802.2:c.3199G>T	p.Gly1067Trp	p.G1067W	ENST00000441802	NM_005245.3	1067	Ggg/Tgg																																																																														
LYN	0	MSKCC	GRCh37	8	56866496	56866496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	592	523	0	ENST00000519728.1:c.743A>G	p.Lys248Arg	p.K248R	ENST00000519728	NM_002350.3	248	aAg/aGg																																																																														
PREX2	0	MSKCC	GRCh37	8	69129873	69129873	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	37	245	0	ENST00000288368.4:c.4627G>T	p.Glu1543Ter	p.E1543*	ENST00000288368	NM_024870.2	1543	Gag/Tag																																																																														
MED12	0	MSKCC	GRCh37	X	70352784	70352784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	644	320	0	ENST00000374080.3:c.4505C>T	p.Ser1502Phe	p.S1502F	ENST00000374080		1502	tCc/tTc																																																																														
TSC2	0	MSKCC	GRCh37	16	2138596	2138596	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	420	455	0	ENST00000219476.3:c.5409del	p.Phe1803LeufsTer23	p.F1803Lfs*23	ENST00000219476	NM_000548.3	1803	ttC/tt																																																																														
DAXX	0	MSKCC	GRCh37	6	33288789	33288789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	281	346	0	ENST00000374542.5:c.763C>T	p.Gln255Ter	p.Q255*	ENST00000374542	NM_001141970.1	255	Cag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945532	151945532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	23	452	1	ENST00000262189.6:c.1987C>T	p.Gln663Ter	p.Q663*	ENST00000262189	NM_170606.2	663	Cag/Tag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485287	8485287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	151	613	0	ENST00000356435.5:c.3093G>C	p.Lys1031Asn	p.K1031N	ENST00000356435		1031	aaG/aaC																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	74	263	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
TBX3	0	MSKCC	GRCh37	12	115118930	115118930	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	95	317	0	ENST00000257566.3:c.411A>T	p.Lys137Asn	p.K137N	ENST00000257566	NM_016569.3	137	aaA/aaT																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	199	364	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	53	209	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	85	349	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	347	590	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	49	394	0	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	218	417	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	261	615	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845583	72845583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	102	407	1	ENST00000268489.5:c.3757C>T	p.Arg1253Cys	p.R1253C	ENST00000268489	NM_006885.3	1253	Cgc/Tgc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165602	118165602	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	36	306	0	ENST00000369448.3:c.112C>T	p.Arg38Ter	p.R38*	ENST00000369448	NM_017709.3	38	Cga/Tga																																																																														
TSC1	7248	MSKCC	GRCh37	9	135785964	135785964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs118203506		P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	54	342	1	ENST00000298552.3:c.1257del	p.Arg420GlyfsTer20	p.R420Gfs*20	ENST00000298552	NM_001162426.1	419	ccC/cc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	46	99	1	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	43	299	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41076870	41076870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	55	368	0	ENST00000373198.4:c.1550C>T	p.Thr517Met	p.T517M	ENST00000373198	NM_133170.3	517	aCg/aTg																																																																														
POLE	0	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	108	456	2	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	75	390	0	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851685	134851685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	54	324	0	ENST00000398015.3:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000398015	NM_004441.4	364	cGg/cAg																																																																														
MGA	0	MSKCC	GRCh37	15	42021422	42021422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	159	414	0	ENST00000219905.7:c.3718C>T	p.Arg1240Ter	p.R1240*	ENST00000219905	NM_001164273.1	1240	Cga/Tga																																																																														
EP300	0	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	365	575	2	ENST00000263253.7:c.6970delC	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435777	56435777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1055597951		P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	52	308	0	ENST00000407977.2:c.1360C>T	p.Arg454Cys	p.R454C	ENST00000407977		454	Cgc/Tgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	126	477	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	269	533	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023070	27023088	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGCCCCGCCGTGGGGCC	AGGGCCCCGCCGTGGGGCC	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	30	68	0	ENST00000324856.7:c.176_194del	p.Glu59GlyfsTer36	p.E59Gfs*36	ENST00000324856	NM_006015.4	59	gAGGGCCCCGCCGTGGGGCCg/gg																																																																														
AKT3	0	MSKCC	GRCh37	1	243859002	243859003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	49	320	0	ENST00000263826.5:c.62dup	p.Asn21LysfsTer19	p.N21Kfs*19	ENST00000263826	NM_005465.4	21	aac/aaAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89653769	89653785	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTAAAGTACTCAGATAT	CTAAAGTACTCAGATAT	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	96	314	0	ENST00000371953.3:c.80-13_83del		p.X27_splice	ENST00000371953	NM_000314.4	27																																																																															
CBL	0	MSKCC	GRCh37	11	119144613	119144613	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	61	377	0	ENST00000264033.4:c.626T>C	p.Leu209Pro	p.L209P	ENST00000264033	NM_005188.3	209	cTa/cCa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434940	49434940	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	32	290	0	ENST00000301067.7:c.6613del	p.Ala2205ProfsTer59	p.A2205Pfs*59	ENST00000301067	NM_003482.3	2205	Gcc/cc																																																																														
POLE	0	MSKCC	GRCh37	12	133218429	133218430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	141	468	0	ENST00000320574.5:c.5180_5181dup	p.Glu1728TrpfsTer34	p.E1728Wfs*34	ENST00000320574	NM_006231.2	1727	-/TG																																																																														
DICER1	0	MSKCC	GRCh37	14	95570104	95570104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	49	296	0	ENST00000343455.3:c.3629C>A	p.Pro1210His	p.P1210H	ENST00000343455	NM_177438.2	1210	cCc/cAc																																																																														
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	59	456	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779317	3779317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	125	263	0	ENST00000262367.5:c.5731C>T	p.Pro1911Ser	p.P1911S	ENST00000262367	NM_004380.2	1911	Ccc/Tcc																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7982767	7982767	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	82	482	0	ENST00000319144.4:c.1018delC	p.Leu340SerfsTer12	p.L340Sfs*12	ENST00000319144	NM_001139.2	340	Ctc/tc																																																																														
AURKB	0	MSKCC	GRCh37	17	8110889	8110889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs146036524		P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	101	515	2	ENST00000585124.1:c.206C>T	p.Thr69Met	p.T69M	ENST00000585124	NM_004217.3	69	aCg/aTg																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39542545	39542545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	43	426	0	ENST00000262039.4:c.349G>A	p.Gly117Arg	p.G117R	ENST00000262039	NM_002647.2	117	Gga/Aga																																																																														
STK11	0	MSKCC	GRCh37	19	1219356	1219356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	229	538	0	ENST00000326873.7:c.408G>A	p.Met136Ile	p.M136I	ENST00000326873	NM_000455.4	136	atG/atA																																																																														
INSR	0	MSKCC	GRCh37	19	7184411	7184411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	175	460	0	ENST00000302850.5:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000302850	NM_000208.2	297	cGg/cAg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602334	10602334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	103	585	1	ENST00000171111.5:c.1244G>A	p.Arg415His	p.R415H	ENST00000171111	NM_203500.1	415	cGc/cAc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36218125	36218125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	51	308	0	ENST00000222270.7:c.4072G>A	p.Ala1358Thr	p.A1358T	ENST00000222270	NM_014727.1	1358	Gca/Aca																																																																														
ERF	0	MSKCC	GRCh37	19	42753752	42753757	+	inframe_deletion	In_Frame_Del	DEL	GAAGAT	GAAGAT	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	211	521	0	ENST00000222329.4:c.507_512del	p.Ser170_Ser171del	p.S170_S171del	ENST00000222329	NM_006494.2	169	tcATCTTCc/tcc																																																																														
INHA	0	MSKCC	GRCh37	2	220437223	220437223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	322	709	2	ENST00000243786.2:c.132del	p.Ala45ArgfsTer2	p.A45Rfs*2	ENST00000243786	NM_002191.3	43	Ccc/cc																																																																														
WWTR1	0	MSKCC	GRCh37	3	149238728	149238728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1181	101	636	3	ENST00000360632.3:c.1067G>A	p.Arg356His	p.R356H	ENST00000360632	NM_015472.4	356	cGt/cAt																																																																														
TET2	0	MSKCC	GRCh37	4	106155475	106155475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	47	363	0	ENST00000380013.4:c.376G>A	p.Gly126Arg	p.G126R	ENST00000380013	NM_001127208.2	126	Ggg/Agg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160585	56160585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	72	317	0	ENST00000399503.3:c.862del	p.Arg288GlufsTer24	p.R288Efs*24	ENST00000399503	NM_005921.1	287	Ccc/cc																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137524702	137524702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	62	579	1	ENST00000367739.4:c.667G>A	p.Val223Met	p.V223M	ENST00000367739	NM_000416.2	223	Gtg/Atg																																																																														
TSC1	0	MSKCC	GRCh37	9	135776158	135776158	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	53	500	0	ENST00000298552.3:c.2569G>C	p.Glu857Gln	p.E857Q	ENST00000298552	NM_001162426.1	857	Gag/Cag																																																																														
TSC1	0	MSKCC	GRCh37	9	135786024	135786025	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	68	443	0	ENST00000298552.3:c.1196dup	p.Leu400ThrfsTer6	p.L400Tfs*6	ENST00000298552	NM_001162426.1	399	cca/ccCa																																																																														
LATS2	0	MSKCC	GRCh37	13	21620085	21620086	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0016904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	143	452	0	ENST00000382592.4:c.80_81delinsGG	p.Lys27Arg	p.K27R	ENST00000382592	NM_014572.2	27	aAA/aGG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	96	404	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32953529	32953529	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs4987047		P-0016906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	103	523	0	ENST00000380152.3:c.8830A>T	p.Ile2944Phe	p.I2944F	ENST00000380152		2944	Atc/Ttc																																																																														
TBX3	0	MSKCC	GRCh37	12	115110073	115110073	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	165	651	0	ENST00000257566.3:c.1805del	p.Pro602LeufsTer30	p.P602Lfs*30	ENST00000257566	NM_016569.3	602	cCt/ct																																																																														
CDH1	0	MSKCC	GRCh37	16	68857396	68857397	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0016906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	178	565	0	ENST00000261769.5:c.2033_2034dup	p.Thr679Ter	p.T679*	ENST00000261769	NM_004360.3	677	-/GT																																																																														
RUNX1	0	MSKCC	GRCh37	21	36231824	36231830	+	frameshift_variant	Frame_Shift_Del	DEL	GCGACTT	GCGACTT	-			P-0016906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1276	119	555	0	ENST00000300305.3:c.554_560del	p.Gln185ProfsTer24	p.Q185Pfs*24	ENST00000300305		185	cAAGTCGCc/cc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56180512	56180512	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	101	314	0	ENST00000399503.3:c.3841del	p.Ser1281LeufsTer7	p.S1281Lfs*7	ENST00000399503	NM_005921.1	1281	Tct/ct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0016907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	33	311	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	72	307	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099023	27099023	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	91	436	0	ENST00000324856.7:c.3442del	p.Gln1148SerfsTer13	p.Q1148Sfs*13	ENST00000324856	NM_006015.4	1147	Ccc/cc																																																																														
PGR	0	MSKCC	GRCh37	11	100920785	100920785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	68	290	0	ENST00000325455.5:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000325455	NM_001202474.3	788	cGg/cAg																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	133	253	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89685310	89685310	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	176	281	0	ENST00000371953.3:c.206del	p.Asn69IlefsTer30	p.N69Ifs*30	ENST00000371953	NM_000314.4	69	Aat/at																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922328	178922328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	68	425	0	ENST00000263967.3:c.1097C>G	p.Pro366Arg	p.P366R	ENST00000263967	NM_006218.2	366	cCc/cGc																																																																														
ARAF	0	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	150	531	0	ENST00000377045.4:c.641C>G	p.Ser214Cys	p.S214C	ENST00000377045	NM_001654.4	214	tCc/tGc																																																																														
STAG2	0	MSKCC	GRCh37	X	123200039	123200040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	65	277	0	ENST00000218089.9:c.2114dup	p.Trp706ValfsTer7	p.W706Vfs*7	ENST00000218089	NM_001042749.1	704	tca/tcAa																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0016910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	782	629	1	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																														
KIT	0	MSKCC	GRCh37	4	55575694	55575694	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	213	381	0	ENST00000288135.5:c.1220T>C	p.Val407Ala	p.V407A	ENST00000288135	NM_000222.2	407	gTt/gCt																																																																														
MED12	0	MSKCC	GRCh37	X	70357757	70357757	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	444	666	0	ENST00000374080.3:c.6012del	p.Thr2005ProfsTer6	p.T2005Pfs*6	ENST00000374080		2003	gCc/gc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	378	487	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
TP53	0	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	53	353	0	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA																																																																														
KLF4	0	MSKCC	GRCh37	9	110251257	110251257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	48	378	0	ENST00000374672.4:c.80C>T	p.Pro27Leu	p.P27L	ENST00000374672	NM_004235.4	27	cCg/cTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89717695	89717695	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	140	420	1	ENST00000371953.3:c.720C>G	p.Tyr240Ter	p.Y240*	ENST00000371953	NM_000314.4	240	taC/taG																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64129189	64129189	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	147	443	0	ENST00000334205.4:c.727G>T	p.Glu243Ter	p.E243*	ENST00000334205	NM_003942.2	243	Gag/Tag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060711	38060711	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1343	80	629	0	ENST00000250448.2:c.1278C>G	p.Tyr426Ter	p.Y426*	ENST00000250448	NM_004496.3	426	taC/taG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0016915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	173	286	0				ENST00000310581	NM_198253.2																																																																																
ERBB3	0	MSKCC	GRCh37	12	56481857	56481857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	361	547	0	ENST00000267101.3:c.785C>A	p.Pro262His	p.P262H	ENST00000267101	NM_001982.3	262	cCt/cAt																																																																														
HRAS	0	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	302	446	1	ENST00000311189.7:c.34G>T	p.Gly12Cys	p.G12C	ENST00000311189		12	Ggc/Tgc																																																																														
RIT1	0	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	342	471	0	ENST00000368323.3:c.270G>C	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atC																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105693	27105694	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0016915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	156	201	0	ENST00000324856.7:c.5305_5306del	p.Leu1769ArgfsTer3	p.L1769Rfs*3	ENST00000324856	NM_006015.4	1768	ctTCta/ctta																																																																														
RIT1	0	MSKCC	GRCh37	1	155874221	155874221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	386	573	0	ENST00000368323.3:c.310G>A	p.Asp104Asn	p.D104N	ENST00000368323	NM_006912.5	104	Gat/Aat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427899	49427899	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	348	473	0	ENST00000301067.7:c.10691T>G	p.Leu3564Arg	p.L3564R	ENST00000301067	NM_003482.3	3564	cTc/cGc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432346	49432347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0016915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	294	513	0	ENST00000301067.7:c.8792dup	p.Gln2932ThrfsTer10	p.Q2932Tfs*10	ENST00000301067	NM_003482.3	2931	cca/ccCa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37882832	37882832	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	292	439	0	ENST00000269571.5:c.2890G>C	p.Glu964Gln	p.E964Q	ENST00000269571		964	Gaa/Caa																																																																														
HGF	0	MSKCC	GRCh37	7	81359093	81359093	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	187	292	0	ENST00000222390.5:c.868G>A	p.Asp290Asn	p.D290N	ENST00000222390	NM_000601.4	290	Gac/Aac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023664	27023664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	277	425	0	ENST00000324856.7:c.771del	p.Ser258ProfsTer105	p.S258Pfs*105	ENST00000324856	NM_006015.4	257	gCc/gc																																																																														
TP53	0	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0016919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	121	357	1	ENST00000269305.4:c.993+2T>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
ALK	0	MSKCC	GRCh37	2	30143090	30143090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	173	536	0	ENST00000389048.3:c.436G>A	p.Gly146Ser	p.G146S	ENST00000389048	NM_004304.4	146	Ggc/Agc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480492	89480492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	61	204	2	ENST00000336596.2:c.2329G>T	p.Ala777Ser	p.A777S	ENST00000336596	NM_005233.5	777	Gct/Tct																																																																														
ATM	0	MSKCC	GRCh37	11	108199837	108199837	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	239	382	0	ENST00000278616.4:c.7179T>G	p.Phe2393Leu	p.F2393L	ENST00000278616	NM_000051.3	2393	ttT/ttG																																																																														
ATM	0	MSKCC	GRCh37	11	108200960	108200960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	409	287	0	ENST00000278616.4:c.7327C>T	p.Arg2443Ter	p.R2443*	ENST00000278616	NM_000051.3	2443	Cga/Tga																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18716407	18716407	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	294	424	0	ENST00000266497.5:c.3754C>G	p.Gln1252Glu	p.Q1252E	ENST00000266497		1252	Cag/Gag																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23539021	23539021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	264	387	0	ENST00000380871.4:c.418G>A	p.Glu140Lys	p.E140K	ENST00000380871	NM_006167.3	140	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	177	483	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0016924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	165	609	2	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
AKT3	0	MSKCC	GRCh37	1	243777011	243777011	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	16	738	0	ENST00000263826.5:c.658C>G	p.Arg220Gly	p.R220G	ENST00000263826	NM_005465.4	220	Cgt/Ggt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	21	520	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PTCH1	0	MSKCC	GRCh37	9	98224273	98224273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	30	182	0	ENST00000331920.6:c.2568G>T	p.Gln856His	p.Q856H	ENST00000331920	NM_000264.3	856	caG/caT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			629	84	655	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			493	102	481	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg																																																																														
MET	0	MSKCC	GRCh37	7	116435984	116435984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	100	650	2	ENST00000397752.3:c.3979C>T	p.Arg1327Cys	p.R1327C	ENST00000397752	NM_000245.2	1327	Cgc/Tgc																																																																														
CTCF	0	MSKCC	GRCh37	16	67660469	67660469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	69	308	1	ENST00000264010.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000264010	NM_006565.3	457	Cga/Tga																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0016932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			653	93	559	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	59	309	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812292	212812292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	56	472	0	ENST00000342788.4:c.284G>A	p.Arg95His	p.R95H	ENST00000342788	NM_005235.2	95	cGt/cAt																																																																														
MTOR	0	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			514	105	421	1	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa																																																																														
MTOR	0	MSKCC	GRCh37	1	11174418	11174418	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			670	170	650	0	ENST00000361445.4:c.7257A>T	p.Glu2419Asp	p.E2419D	ENST00000361445	NM_004958.3	2419	gaA/gaT																																																																														
INSR	0	MSKCC	GRCh37	19	7267614	7267614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			790	123	577	3	ENST00000302850.5:c.394G>A	p.Gly132Ser	p.G132S	ENST00000302850	NM_000208.2	132	Ggc/Agc																																																																														
RRAS	0	MSKCC	GRCh37	19	50138876	50138876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016932-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			895	84	741	4	ENST00000246792.3:c.614C>A	p.Ala205Asp	p.A205D	ENST00000246792	NM_006270.3	205	gCc/gAc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266611	198266611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	109	443	0	ENST00000335508.6:c.2225G>A	p.Gly742Asp	p.G742D	ENST00000335508	NM_012433.2	742	gGt/gAt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2199938	2199938	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0016933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	98	543	0	ENST00000398665.3:c.707G>C	p.Ser236Thr	p.S236T	ENST00000398665	NM_032482.2	236	aGt/aCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	307	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	454	592	3	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107234	27107234	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	240	357	0	ENST00000324856.7:c.6845T>C	p.Ile2282Thr	p.I2282T	ENST00000324856	NM_006015.4	2282	aTt/aCt																																																																														
WWTR1	0	MSKCC	GRCh37	3	149374909	149374909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	280	552	0	ENST00000360632.3:c.185C>G	p.Ser62Trp	p.S62W	ENST00000360632	NM_015472.4	62	tCg/tGg																																																																														
NF1	0	MSKCC	GRCh37	17	29559090	29559090	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	35	65	0	ENST00000358273.4:c.3198-1G>C		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																															
CARD11	0	MSKCC	GRCh37	7	2976761	2976761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	786	685	0	ENST00000396946.4:c.1251G>A	p.Met417Ile	p.M417I	ENST00000396946	NM_032415.4	417	atG/atA																																																																														
ARID2	0	MSKCC	GRCh37	12	46287202	46287202	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	235	301	0	ENST00000334344.6:c.5148-1G>T		p.X1716_splice	ENST00000334344	NM_152641.2	1716																																																																															
KNSTRN	0	MSKCC	GRCh37	15	40675231	40675231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	165	519	0	ENST00000249776.8:c.195C>G	p.Asp65Glu	p.D65E	ENST00000249776	NM_033286.3	65	gaC/gaG																																																																														
PLCG2	0	MSKCC	GRCh37	16	81819632	81819632	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	118	477	0	ENST00000359376.3:c.38A>C	p.Tyr13Ser	p.Y13S	ENST00000359376	NM_002661.3	13	tAt/tCt																																																																														
PMS1	0	MSKCC	GRCh37	2	190728565	190728565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	182	756	0	ENST00000441310.2:c.1958del	p.Lys653ArgfsTer2	p.K653Rfs*2	ENST00000441310	NM_000534.4	651	agA/ag																																																																														
SRC	0	MSKCC	GRCh37	20	36022629	36022629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	248	732	0	ENST00000358208.4:c.502G>A	p.Ala168Thr	p.A168T	ENST00000358208		168	Gca/Aca																																																																														
TET2	0	MSKCC	GRCh37	4	106190798	106190798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	133	441	3	ENST00000380013.4:c.4076G>A	p.Arg1359His	p.R1359H	ENST00000380013	NM_001127208.2	1359	cGt/cAt																																																																														
ROS1	0	MSKCC	GRCh37	6	117609960	117609998	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTCACCTGTGAAAAAAATATGAATGTTATTCTAGCATG	CTTCACCTGTGAAAAAAATATGAATGTTATTCTAGCATG	TTATTTATTATT			P-0016934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	108	417	4	ENST00000368508.3:c.6734-33_6739delinsAATAATAAATAA		p.X2245_splice	ENST00000368508	NM_002944.2	2245																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	58	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68835761	68835762	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	56	537	0	ENST00000261769.5:c.353dup	p.Val119SerfsTer49	p.V119Sfs*49	ENST00000261769	NM_004360.3	118	aca/aCca																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	157	593	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	55	378	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
RICTOR	0	MSKCC	GRCh37	5	38968098	38968098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	54	848	1	ENST00000357387.3:c.1007G>A	p.Arg336His	p.R336H	ENST00000357387	NM_152756.3	336	cGt/cAt																																																																														
NF1	0	MSKCC	GRCh37	17	29553492	29553492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	162	866	0	ENST00000358273.4:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000358273	NM_001042492.2	681	Cga/Tga																																																																														
SPOP	0	MSKCC	GRCh37	17	47688746	47688746	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200866660		P-0016937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	172	590	0	ENST00000347630.2:c.554G>A	p.Arg185Gln	p.R185Q	ENST00000347630	NM_001007230.1	185	cGg/cAg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696656	47696656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	69	695	0	ENST00000347630.2:c.292G>C	p.Val98Leu	p.V98L	ENST00000347630	NM_001007230.1	98	Gtt/Ctt																																																																														
CARM1	0	MSKCC	GRCh37	19	11027109	11027109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	221	983	0	ENST00000327064.4:c.874G>A	p.Val292Ile	p.V292I	ENST00000327064	NM_199141.1	292	Gtc/Atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	144	823	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0016939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	76	481	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280031	66280031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	71	362	1	ENST00000273854.3:c.1658G>A	p.Arg553Gln	p.R553Q	ENST00000273854	NM_004439.5	553	cGa/cAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057789	27057795	+	frameshift_variant	Frame_Shift_Del	DEL	GTATCAG	GTATCAG	-			P-0016939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	157	1088	1	ENST00000324856.7:c.1497_1503del	p.Tyr500SerfsTer117	p.Y500Sfs*117	ENST00000324856	NM_006015.4	499	tcGTATCAG/tc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103518187	103518187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	66	327	0	ENST00000355739.4:c.2125G>A	p.Asp709Asn	p.D709N	ENST00000355739	NM_000123.3	709	Gac/Aac																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177792	56177792	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	107	447	0	ENST00000399503.3:c.2765C>G	p.Ala922Gly	p.A922G	ENST00000399503	NM_005921.1	922	gCc/gGc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178445	56178445	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	85	370	0	ENST00000399503.3:c.3418A>G	p.Met1140Val	p.M1140V	ENST00000399503	NM_005921.1	1140	Atg/Gtg																																																																														
BCOR	0	MSKCC	GRCh37	X	39931991	39931991	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	117	845	0	ENST00000378444.4:c.2608A>G	p.Thr870Ala	p.T870A	ENST00000378444	NM_001123385.1	870	Act/Gct																																																																														
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	112	897	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55143617	55143617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	37	358	1	ENST00000257290.5:c.1849C>T	p.Arg617Trp	p.R617W	ENST00000257290	NM_006206.4	617	Cgg/Tgg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42848519	42848519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	50	819	0	ENST00000398585.3:c.823del	p.Ser275LeufsTer5	p.S275Lfs*5	ENST00000398585	NM_001135099.1	275	Tct/ct																																																																														
TET1	0	MSKCC	GRCh37	10	70406492	70406492	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	76	825	1	ENST00000373644.4:c.4006A>T	p.Thr1336Ser	p.T1336S	ENST00000373644	NM_030625.2	1336	Aca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0016942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	690	785	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	446	479	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	364	578	1	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
CUL3	0	MSKCC	GRCh37	2	225379375	225379375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	147	937	0	ENST00000264414.4:c.493C>G	p.Leu165Val	p.L165V	ENST00000264414	NM_003590.4	165	Cta/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0016946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	165	679	2	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt																																																																														
TET1	0	MSKCC	GRCh37	10	70406167	70406167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	86	911	1	ENST00000373644.4:c.3681G>T	p.Arg1227Ser	p.R1227S	ENST00000373644	NM_030625.2	1227	agG/agT																																																																														
SETD8	0	MSKCC	GRCh37	12	123874057	123874057	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	17	29	0	ENST00000330479.4:c.88G>C	p.Glu30Gln	p.E30Q	ENST00000330479	NM_020382.3	30	Gag/Cag																																																																														
MGA	0	MSKCC	GRCh37	15	42058618	42058618	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	35	366	0	ENST00000219905.7:c.8338del	p.Met2780Ter	p.M2780*	ENST00000219905	NM_001164273.1	2780	Atg/tg																																																																														
PALB2	0	MSKCC	GRCh37	16	23646818	23646819	+	missense_variant	Missense_Mutation	DNP	TG	TG	AA			P-0016946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	65	754	1	ENST00000261584.4:c.1048_1049delinsTT	p.Gln350Leu	p.Q350L	ENST00000261584	NM_024675.3	350	CAa/TTa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32164807	32164807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	85	492	0	ENST00000375023.3:c.5095G>C	p.Glu1699Gln	p.E1699Q	ENST00000375023	NM_004557.3	1699	Gag/Cag																																																																														
LATS1	0	MSKCC	GRCh37	6	150005333	150005333	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	68	459	0	ENST00000253339.5:c.892G>C	p.Glu298Gln	p.E298Q	ENST00000253339		298	Gag/Cag																																																																														
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	130	785	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380350	14380350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	42	468	0	ENST00000256196.4:c.67G>A	p.Gly23Ser	p.G23S	ENST00000256196		23	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	65	754	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1173	41	732	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11998890	11998890	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0016950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	29	302	0	ENST00000353533.5:c.394-2A>G		p.X132_splice	ENST00000353533	NM_003010.3	132																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	96	866	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0016951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	89	664	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																														
NF1	0	MSKCC	GRCh37	17	29665110	29665110	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	61	875	2	ENST00000358273.4:c.6772C>T	p.Arg2258Ter	p.R2258*	ENST00000358273	NM_001042492.2	2258	Cga/Tga																																																																														
MYCN	0	MSKCC	GRCh37	2	16082341	16082341	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	87	1133	0	ENST00000281043.3:c.155A>C	p.Lys52Thr	p.K52T	ENST00000281043	NM_005378.4	52	aAg/aCg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252963	36252964	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ATCACAGT			P-0016951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	107	678	0	ENST00000300305.3:c.391_398dup	p.Met133IlefsTer3	p.M133Ifs*3	ENST00000300305		133	atg/atACTGTGATg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	224	514	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	28	465	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332882	153332882	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	70	521	0	ENST00000281708.4:c.74C>G	p.Ser25Ter	p.S25*	ENST00000281708	NM_033632.3	25	tCa/tGa																																																																														
BCL10	0	MSKCC	GRCh37	1	85733393	85733393	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	62	684	0	ENST00000370580.1:c.619C>G	p.Leu207Val	p.L207V	ENST00000370580	NM_003921.4	207	Cta/Gta																																																																														
DIS3	0	MSKCC	GRCh37	13	73355925	73355925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	433	852	0	ENST00000377767.4:c.46G>T	p.Val16Leu	p.V16L	ENST00000377767	NM_014953.3	16	Gtg/Ttg																																																																														
EP300	0	MSKCC	GRCh37	22	41565580	41565580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	50	651	0	ENST00000263253.7:c.4246G>T	p.Glu1416Ter	p.E1416*	ENST00000263253	NM_001429.3	1416	Gaa/Taa																																																																														
INHBA	0	MSKCC	GRCh37	7	41729410	41729410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	48	589	0	ENST00000242208.4:c.1119C>G	p.Ile373Met	p.I373M	ENST00000242208	NM_002192.2	373	atC/atG																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258970	153258970	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0016958-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	20	403	0	ENST00000281708.4:c.845C>G	p.Ser282Ter	p.S282*	ENST00000281708	NM_033632.3	282	tCa/tGa																																																																														
FANCA	0	MSKCC	GRCh37	16	89849317	89849317	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	253	867	0	ENST00000389301.3:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000389301	NM_000135.2	526	Gaa/Caa																																																																														
TP53	0	MSKCC	GRCh37	17	7572924	7572934	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	ATGTCAGTCTG	ATGTCAGTCTG	-			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	303	574	0	ENST00000269305.4:c.1175_*3delCAGACTGACAT		p.*392fs*	ENST00000269305	NM_001126112.2	392																																																																															
MAP2K4	0	MSKCC	GRCh37	17	12028636	12028636	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	379	541	0	ENST00000353533.5:c.839C>G	p.Ser280Ter	p.S280*	ENST00000353533	NM_003010.3	280	tCa/tGa																																																																														
STAT3	0	MSKCC	GRCh37	17	40476813	40476813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	128	819	3	ENST00000264657.5:c.1516G>A	p.Glu506Lys	p.E506K	ENST00000264657	NM_139276.2	506	Gag/Aag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2207633	2207633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	271	928	1	ENST00000398665.3:c.917C>T	p.Thr306Met	p.T306M	ENST00000398665	NM_032482.2	306	aCg/aTg																																																																														
MYC	0	MSKCC	GRCh37	8	128753109	128753109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	420	710	0	ENST00000377970.2:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000377970	NM_002467.4	424	Gag/Aag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974779	21974780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	70	218	0	ENST00000304494.5:c.47dup	p.Ala17GlyfsTer27	p.A17Gfs*27	ENST00000304494	NM_000077.4	16	ctg/ctTg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974779	21974780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0016960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	70	218	0	ENST00000304494.5:c.47dup	p.Ala17GlyfsTer27	p.A17Gfs*27	ENST00000304494	NM_000077.4	16	ctg/ctTg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0016962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	103	724	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7573996	7573996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	105	807	0	ENST00000269305.4:c.1031T>C	p.Leu344Pro	p.L344P	ENST00000269305	NM_001126112.2	344	cTg/cCg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	57	499	0	ENST00000342988.3:c.1052A>G	p.Asp351Gly	p.D351G	ENST00000342988	NM_005359.5	351	gAt/gGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	118	763	0	ENST00000269305.4:c.810T>A	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttA																																																																														
APC	0	MSKCC	GRCh37	5	112174262	112174262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0016962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	58	422	0	ENST00000257430.4:c.2971G>T	p.Glu991Ter	p.E991*	ENST00000257430	NM_000038.5	991	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0016962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	45	316	0	ENST00000257430.4:c.4063dup	p.Ser1355PhefsTer20	p.S1355Ffs*20	ENST00000257430	NM_000038.5	1353	-/T																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	195	848	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	179	603	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	184	772	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248427	212248427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	42	298	0	ENST00000342788.4:c.3840G>T	p.Glu1280Asp	p.E1280D	ENST00000342788	NM_005235.2	1280	gaG/gaT																																																																														
SOX9	0	MSKCC	GRCh37	17	70119777	70119778	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	209	841	2	ENST00000245479.2:c.782_783dup	p.Gly262ArgfsTer18	p.G262Rfs*18	ENST00000245479	NM_000346.3	260	cca/ccAGa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223649	36223649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	168	821	2	ENST00000222270.7:c.6199G>A	p.Gly2067Ser	p.G2067S	ENST00000222270	NM_014727.1	2067	Ggc/Agc																																																																														
TSC1	0	MSKCC	GRCh37	9	135779135	135779135	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	47	471	0	ENST00000298552.3:c.2111A>G	p.Tyr704Cys	p.Y704C	ENST00000298552	NM_001162426.1	704	tAt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	97	752	0	ENST00000269305.4:c.338T>C	p.Phe113Ser	p.F113S	ENST00000269305	NM_001126112.2	113	tTc/tCc																																																																														
STK11	0	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	95	818	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	294	604	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473780	67473780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	132	505	0	ENST00000327367.4:c.860G>A	p.Arg287Gln	p.R287Q	ENST00000327367	NM_005902.3	287	cGg/cAg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	266	490	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg																																																																														
CCND2	0	MSKCC	GRCh37	12	4385357	4385357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	62	348	1	ENST00000261254.3:c.382G>A	p.Asp128Asn	p.D128N	ENST00000261254	NM_001759.3	128	Gac/Aac																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18266948	18266948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	98	389	0	ENST00000222254.8:c.259G>T	p.Gly87Cys	p.G87C	ENST00000222254	NM_005027.3	87	Ggc/Tgc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247294	153247294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	344	659	1	ENST00000281708.4:c.1508C>T	p.Ala503Val	p.A503V	ENST00000281708	NM_033632.3	503	gCa/gTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	184	559	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	95	525	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	190	764	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	0	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	67	435	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																																																														
ARID2	0	MSKCC	GRCh37	12	46243936	46243936	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	159	747	0	ENST00000334344.6:c.2030del	p.Val677GlyfsTer24	p.V677Gfs*24	ENST00000334344	NM_152641.2	677	gTg/gg																																																																														
SOX9	0	MSKCC	GRCh37	17	70118931	70118932	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	152	950	1	ENST00000245479.2:c.505dup	p.His169ProfsTer83	p.H169Pfs*83	ENST00000245479	NM_000346.3	168	gac/gaCc																																																																														
TET2	0	MSKCC	GRCh37	4	106155535	106155535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	64	486	0	ENST00000380013.4:c.436G>A	p.Asp146Asn	p.D146N	ENST00000380013	NM_001127208.2	146	Gat/Aat																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945396	151945396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	43	748	0	ENST00000262189.6:c.2123C>T	p.Ser708Leu	p.S708L	ENST00000262189	NM_170606.2	708	tCa/tTa																																																																														
PGR	0	MSKCC	GRCh37	11	100920685	100920685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	181	751	2	ENST00000325455.5:c.2463G>T	p.Met821Ile	p.M821I	ENST00000325455	NM_001202474.3	821	atG/atT																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178948044	178948044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	165	402	0	ENST00000263967.3:c.2816A>G	p.Asp939Gly	p.D939G	ENST00000263967	NM_006218.2	939	gAt/gGt																																																																														
RXRA	0	MSKCC	GRCh37	9	137309016	137309016	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	309	739	0	ENST00000481739.1:c.623del	p.Glu208GlyfsTer49	p.E208Gfs*49	ENST00000481739	NM_002957.4	208	gAg/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7578503	7578503	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	430	1072	0	ENST00000269305.4:c.427del	p.Val143CysfsTer27	p.V143Cfs*27	ENST00000269305	NM_001126112.2	143	Gtg/tg																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	319	1101	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
IRS1	0	MSKCC	GRCh37	2	227661621	227661621	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	55	535	0	ENST00000305123.5:c.1834T>C	p.Tyr612His	p.Y612H	ENST00000305123	NM_005544.2	612	Tac/Cac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928071	178928098	+	protein_altering_variant	In_Frame_Del	DEL	ATGGATTAGAAGATTTGCTGAACCCTAT	ATGGATTAGAAGATTTGCTGAACCCTAT	G			P-0016969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	121	730	0	ENST00000263967.3:c.1349_1376delinsG	p.His450_Ile459delinsArg	p.H450_I459delinsR	ENST00000263967	NM_006218.2	450	cATGGATTAGAAGATTTGCTGAACCCTATt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0016970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	179	549	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0016970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	192	552	1	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361126	66361126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	269	499	0	ENST00000273854.3:c.1046C>T	p.Pro349Leu	p.P349L	ENST00000273854	NM_004439.5	349	cCa/cTa																																																																														
KIT	0	MSKCC	GRCh37	4	55593604	55593607	+	protein_altering_variant	In_Frame_Del	DEL	GGAA	GGAA	T			P-0016970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	236	547	0	ENST00000288135.5:c.1670_1673delinsT	p.Trp557_Lys558delinsLeu	p.W557_K558delinsL	ENST00000288135	NM_000222.2	557	tGGAAg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	389	793	17	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0016973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	117	474	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096252	178096252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	106	469	1	ENST00000397062.3:c.1079C>T	p.Ser360Leu	p.S360L	ENST00000397062	NM_006164.4	360	tCa/tTa																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713589	30713589	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	197	419	13	ENST00000359013.4:c.989T>G	p.Leu330Arg	p.L330R	ENST00000359013	NM_001024847.2	330	cTc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7579353	7579356	+	protein_altering_variant	In_Frame_Del	DEL	CCAG	CCAG	T			P-0016973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	228	854	5	ENST00000269305.4:c.331_334delinsA	p.Leu111_Gly112delinsSer	p.L111_G112delinsS	ENST00000269305	NM_001126112.2	111	CTGGgc/Agc																																																																														
DIS3	0	MSKCC	GRCh37	13	73335568	73335571	+	missense_variant	Missense_Mutation	ONP	CCAT	CCAT	ACAA			P-0016973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	244	692	6	ENST00000377767.4:c.2600_2603delinsTTGT	p.Tyr867_Gly868delinsPheVal	p.Y867_G868delinsFV	ENST00000377767	NM_014953.3	867	tATGGt/tTTGTt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	420	407	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	165	848	0	ENST00000269305.4:c.428T>G	p.Val143Gly	p.V143G	ENST00000269305	NM_001126112.2	143	gTg/gGg																																																																														
FANCA	0	MSKCC	GRCh37	16	89845378	89845378	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	114	642	0	ENST00000389301.3:c.1749C>G	p.Phe583Leu	p.F583L	ENST00000389301	NM_000135.2	583	ttC/ttG																																																																														
NF1	0	MSKCC	GRCh37	17	29576134	29576134	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0016974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	104	514	0	ENST00000358273.4:c.4107C>G	p.Tyr1369Ter	p.Y1369*	ENST00000358273	NM_001042492.2	1369	taC/taG																																																																														
INSR	0	MSKCC	GRCh37	19	7120763	7120763	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0016974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	127	665	0	ENST00000302850.5:c.3530-3C>T		p.X1177_splice	ENST00000302850	NM_000208.2	1177																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0016975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	102	767	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	285	685	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	255	550	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	129	356	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	110	323	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																														
ATM	0	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	271	678	1	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																														
MUTYH	0	MSKCC	GRCh37	1	45799143	45799143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	269	641	1	ENST00000372115.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000372115	NM_001048171.1	83	cGa/cAa																																																																														
SOX17	0	MSKCC	GRCh37	8	55372224	55372224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	40	544	1	ENST00000297316.4:c.914C>T	p.Ala305Val	p.A305V	ENST00000297316	NM_022454.3	305	gCg/gTg																																																																														
ABL1	0	MSKCC	GRCh37	9	133759665	133759665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	56	617	0	ENST00000318560.5:c.1988G>T	p.Ser663Ile	p.S663I	ENST00000318560	NM_005157.4	663	aGc/aTc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0016985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	228	295	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	230	485	3	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
RIT1	0	MSKCC	GRCh37	1	155874263	155874263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	1106	562	0	ENST00000368323.3:c.268A>G	p.Met90Val	p.M90V	ENST00000368323	NM_006912.5	90	Atg/Gtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0016987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	115	580	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MST1	0	MSKCC	GRCh37	3	49725021	49725021	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114429531		P-0016987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	165	514	0	ENST00000449682.2:c.323G>A	p.Arg108His	p.R108H	ENST00000449682	NM_020998.3	108	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577572	7577572	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	429	539	0	ENST00000269305.4:c.709A>G	p.Met237Val	p.M237V	ENST00000269305	NM_001126112.2	237	Atg/Gtg																																																																														
SLX4	0	MSKCC	GRCh37	16	3640152	3640152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0016987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	477	892	1	ENST00000294008.3:c.3487C>A	p.Leu1163Ile	p.L1163I	ENST00000294008	NM_032444.2	1163	Cta/Ata																																																																														
SESN2	0	MSKCC	GRCh37	1	28607300	28607300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0016990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	222	430	1	ENST00000253063.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000253063	NM_031459.4	477	cGc/cAc																																																																														
FLT1	0	MSKCC	GRCh37	13	28896984	28896984	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	247	568	0	ENST00000282397.4:c.2896T>A	p.Phe966Ile	p.F966I	ENST00000282397	NM_002019.4	966	Ttt/Att																																																																														
TP53	0	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1324	121	711	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																														
RB1	0	MSKCC	GRCh37	13	48934154	48934164	+	stop_gained,protein_altering_variant	Nonsense_Mutation	DEL	GGAAGTATTAC	GGAAGTATTAC	AAGATGAA			P-0016991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	147	430	2	ENST00000267163.4:c.609_619delinsAAGATGAA	p.Glu204_Gln207delinsArgTerLys	p.E204_Q207delinsR*K	ENST00000267163	NM_000321.2	203	ggGGAAGTATTACaa/ggAAGATGAAaa																																																																														
BLM	0	MSKCC	GRCh37	15	91308599	91308599	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0016991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1282	103	488	0	ENST00000355112.3:c.2148G>C	p.Leu716Phe	p.L716F	ENST00000355112	NM_000057.2	716	ttG/ttC																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857818	9857818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	45	348	0	ENST00000330684.3:c.3583G>C	p.Asp1195His	p.D1195H	ENST00000330684	NM_001134407.1	1195	Gac/Cac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0016992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	136	713	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	181	593	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
MGA	0	MSKCC	GRCh37	15	41988801	41988801	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0016992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	165	809	0	ENST00000219905.7:c.1596del	p.Lys532AsnfsTer15	p.K532Nfs*15	ENST00000219905	NM_001164273.1	531	agA/ag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604664	48604664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	114	422	0	ENST00000342988.3:c.1486del	p.Arg496ValfsTer8	p.R496Vfs*8	ENST00000342988	NM_005359.5	496	Cgt/gt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99251330	99251330	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	244	597	0	ENST00000268035.6:c.634C>T	p.Gln212Ter	p.Q212*	ENST00000268035	NM_000875.3	212	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	288	560	3	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	269	761	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	182	422	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187540380	187540380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202097333		P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	29	449	1	ENST00000441802.2:c.7360C>T	p.Arg2454Trp	p.R2454W	ENST00000441802	NM_005245.3	2454	Cgg/Tgg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120469178	120469178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	331	1052	0	ENST00000256646.2:c.3949G>A	p.Gly1317Arg	p.G1317R	ENST00000256646	NM_024408.3	1317	Ggg/Agg																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195752	102195752	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	470	413	0	ENST00000263464.3:c.512C>G	p.Ala171Gly	p.A171G	ENST00000263464	NM_001165.4	171	gCc/gGc																																																																														
RB1	0	MSKCC	GRCh37	13	48947599	48947599	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	299	687	0	ENST00000267163.4:c.1187del	p.Pro396LeufsTer5	p.P396Lfs*5	ENST00000267163	NM_000321.2	396	Cct/ct																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533093	63533093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	174	488	0	ENST00000307078.5:c.1801G>T	p.Gly601Cys	p.G601C	ENST00000307078	NM_004655.3	601	Ggc/Tgc																																																																														
MALT1	0	MSKCC	GRCh37	18	56400628	56400628	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	135	240	2	ENST00000348428.3:c.1223-1G>T		p.X408_splice	ENST00000348428	NM_006785.3	408																																																																															
PIK3R2	0	MSKCC	GRCh37	19	18266990	18266990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	112	267	0	ENST00000222254.8:c.301C>A	p.Arg101Ser	p.R101S	ENST00000222254	NM_005027.3	101	Cgt/Agt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198264842	198264842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	62	831	0	ENST00000335508.6:c.2950G>A	p.Glu984Lys	p.E984K	ENST00000335508	NM_012433.2	984	Gaa/Aaa																																																																														
CSF1R	0	MSKCC	GRCh37	5	149460450	149460450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	116	574	1	ENST00000286301.3:c.187G>A	p.Asp63Asn	p.D63N	ENST00000286301	NM_005211.3	63	Gat/Aat																																																																														
E2F3	0	MSKCC	GRCh37	6	20481617	20481617	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	165	439	0	ENST00000346618.3:c.686A>T	p.His229Leu	p.H229L	ENST00000346618	NM_001949.4	229	cAc/cTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	257	568	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276653	15276653	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	51	662	0	ENST00000263388.2:c.5612C>G	p.Ser1871Ter	p.S1871*	ENST00000263388	NM_000435.2	1871	tCa/tGa																																																																														
RBM10	0	MSKCC	GRCh37	X	47032566	47032566	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	210	559	0	ENST00000329236.7:c.241G>T	p.Glu81Ter	p.E81*	ENST00000329236	NM_001204466.1	81	Gag/Tag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911787	32911787	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	212	759	2	ENST00000380152.3:c.3295T>A	p.Ser1099Thr	p.S1099T	ENST00000380152		1099	Tca/Aca																																																																														
RYBP	0	MSKCC	GRCh37	3	72495704	72495705	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTC			P-0017001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	53	481	0	ENST00000477973.2:c.363_365dup	p.Arg122dup	p.R122dup	ENST00000477973	NM_012234.5	122	aac/aGAAac																																																																														
BRAF	0	MSKCC	GRCh37	7	140434558	140434558	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	38	254	0	ENST00000288602.6:c.2140A>G	p.Ile714Val	p.I714V	ENST00000288602	NM_004333.4	714	Att/Gtt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	289	590	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	121	387	0				ENST00000310581	NM_198253.2																																																																																
ROS1	0	MSKCC	GRCh37	6	117709162	117709162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	146	442	0	ENST00000368508.3:c.1795G>A	p.Glu599Lys	p.E599K	ENST00000368508	NM_002944.2	599	Gaa/Aaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561151	9561151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	135	331	0	ENST00000353224.5:c.631G>A	p.Glu211Lys	p.E211K	ENST00000353224	NM_177990.2	211	Gaa/Aaa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306677	41306677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	229	554	3	ENST00000373198.4:c.982C>T	p.Arg328Cys	p.R328C	ENST00000373198	NM_133170.3	328	Cgc/Tgc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	77	357	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	415	837	0	ENST00000269305.4:c.653T>G	p.Val218Gly	p.V218G	ENST00000269305	NM_001126112.2	218	gTg/gGg																																																																														
INHBA	0	MSKCC	GRCh37	7	41729713	41729713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	94	496	0	ENST00000242208.4:c.816G>T	p.Lys272Asn	p.K272N	ENST00000242208	NM_002192.2	272	aaG/aaT																																																																														
MTOR	0	MSKCC	GRCh37	1	11181418	11181418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	270	662	0	ENST00000361445.4:c.6818C>T	p.Pro2273Leu	p.P2273L	ENST00000361445	NM_004958.3	2273	cCg/cTg																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439869	51439869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	105	248	0	ENST00000262662.1:c.434G>A	p.Arg145Lys	p.R145K	ENST00000262662		145	aGg/aAg																																																																														
WT1	0	MSKCC	GRCh37	11	32414302	32414302	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	197	368	0	ENST00000332351.3:c.1250-1G>A		p.X417_splice	ENST00000332351	NM_024426.4	417																																																																															
INPPL1	0	MSKCC	GRCh37	11	71945648	71945648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	273	509	0	ENST00000298229.2:c.2404C>T	p.Gln802Ter	p.Q802*	ENST00000298229	NM_001567.3	802	Cag/Tag																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14629065	14629066	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	96	416	0	ENST00000254322.2:c.96_97delinsAT	p.His32_Pro33delinsGlnSer	p.H32_P33delinsQS	ENST00000254322	NM_006145.1	32	caCCcg/caATcg																																																																														
JAK3	0	MSKCC	GRCh37	19	17950309	17950309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	177	627	0	ENST00000458235.1:c.1418C>T	p.Ser473Phe	p.S473F	ENST00000458235	NM_000215.3	473	tCc/tTc																																																																														
TET2	0	MSKCC	GRCh37	4	106157053	106157053	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	83	666	0	ENST00000380013.4:c.1954C>T	p.Gln652Ter	p.Q652*	ENST00000380013	NM_001127208.2	652	Cag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860493	151860493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	311	482	1	ENST00000262189.6:c.10169C>T	p.Pro3390Leu	p.P3390L	ENST00000262189	NM_170606.2	3390	cCc/cTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105907	27105907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	423	457	0	ENST00000324856.7:c.5518G>A	p.Gly1840Ser	p.G1840S	ENST00000324856	NM_006015.4	1840	Ggc/Agc																																																																														
SUFU	0	MSKCC	GRCh37	10	104264079	104264081	+	inframe_deletion	In_Frame_Del	DEL	TCG	TCG	-			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	687	826	0	ENST00000369902.3:c.172_174del	p.Val58del	p.V58del	ENST00000369902	NM_016169.3	57	aTCGtc/atc																																																																														
WT1	0	MSKCC	GRCh37	11	32421528	32421528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	456	478	0	ENST00000332351.3:c.1064G>T	p.Arg355Ile	p.R355I	ENST00000332351	NM_024426.4	355	aGa/aTa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425668	49425668	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	403	526	0	ENST00000301067.7:c.12820C>G	p.Leu4274Val	p.L4274V	ENST00000301067	NM_003482.3	4274	Ctc/Gtc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112581	115112581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	671	929	2	ENST00000257566.3:c.1159C>T	p.Pro387Ser	p.P387S	ENST00000257566	NM_016569.3	387	Ccc/Tcc																																																																														
FLT3	0	MSKCC	GRCh37	13	28626689	28626689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	413	439	0	ENST00000241453.7:c.607G>A	p.Gly203Arg	p.G203R	ENST00000241453	NM_004119.2	203	Ggg/Agg																																																																														
RB1	0	MSKCC	GRCh37	13	48947536	48947537	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	CTAGGACTGTTATGAACACTATCCAA			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	408	754	0	ENST00000267163.4:c.1128-3_1150dup		p.X376_splice	ENST00000267163	NM_000321.2	376																																																																															
CREBBP	0	MSKCC	GRCh37	16	3781408	3781408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	447	566	0	ENST00000262367.5:c.4957G>T	p.Asp1653Tyr	p.D1653Y	ENST00000262367	NM_004380.2	1653	Gac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	689	739	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																														
ACVR1	0	MSKCC	GRCh37	2	158617530	158617530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	463	517	1	ENST00000263640.3:c.1126G>T	p.Val376Leu	p.V376L	ENST00000263640	NM_001105.4	376	Gtg/Ttg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	180	521	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133521	55133521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	600	761	0	ENST00000257290.5:c.825G>T	p.Leu275Phe	p.L275F	ENST00000257290	NM_006206.4	275	ttG/ttT																																																																														
IL7R	0	MSKCC	GRCh37	5	35860980	35860980	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	386	379	0	ENST00000303115.3:c.109G>C	p.Asp37His	p.D37H	ENST00000303115	NM_002185.3	37	Gac/Cac																																																																														
VEGFA	0	MSKCC	GRCh37	6	43749815	43749815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	359	468	0	ENST00000523873.1:c.668G>T	p.Arg223Leu	p.R223L	ENST00000523873		223	cGt/cTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151876985	151876985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	388	471	0	ENST00000262189.6:c.7376C>T	p.Pro2459Leu	p.P2459L	ENST00000262189	NM_170606.2	2459	cCa/cTa																																																																														
PREX2	0	MSKCC	GRCh37	8	69033191	69033191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	619	764	0	ENST00000288368.4:c.3631C>A	p.Pro1211Thr	p.P1211T	ENST00000288368	NM_024870.2	1211	Cca/Aca																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986497	36986498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	845	890	0	ENST00000354822.5:c.1191_1192insA	p.Gly398ArgfsTer41	p.G398Rfs*41	ENST00000354822	NM_001079668.2	397	-/A																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0017008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	44	733	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	153	485	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SPEN	0	MSKCC	GRCh37	1	16256235	16256236	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0017010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	337	647	0	ENST00000375759.3:c.3502_3503del	p.Ser1168LeufsTer10	p.S1168Lfs*10	ENST00000375759	NM_015001.2	1167	cAG/c																																																																														
ATM	0	MSKCC	GRCh37	11	108117731	108117732	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTATATGATCTGCTAGTGAATGAGATAAGTCATATAGGAAGTAGAGGAAAGTA			P-0017010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	29	373	0	ENST00000278616.4:c.945_997dup	p.Ser333TyrfsTer5	p.S333Yfs*5	ENST00000278616	NM_000051.3	314	-/TTATATGATCTGCTAGTGAATGAGATAAGTCATATAGGAAGTAGAGGAAAGTA																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445485	49445485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	146	704	2	ENST00000301067.7:c.1981C>T	p.Arg661Cys	p.R661C	ENST00000301067	NM_003482.3	661	Cgc/Tgc																																																																														
NF1	0	MSKCC	GRCh37	17	29559155	29559155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	36	444	0	ENST00000358273.4:c.3262G>A	p.Glu1088Lys	p.E1088K	ENST00000358273	NM_001042492.2	1088	Gaa/Aaa																																																																														
PREX2	0	MSKCC	GRCh37	8	69021835	69021835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	364	498	0	ENST00000288368.4:c.3123G>T	p.Glu1041Asp	p.E1041D	ENST00000288368	NM_024870.2	1041	gaG/gaT																																																																														
TP53	0	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	43	491	0	ENST00000269305.4:c.712T>A	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	Tgt/Agt																																																																														
PAK7	0	MSKCC	GRCh37	20	9520208	9520208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	36	491	0	ENST00000353224.5:c.2061G>C	p.Gln687His	p.Q687H	ENST00000353224	NM_177990.2	687	caG/caC																																																																														
UPF1	0	MSKCC	GRCh37	19	18961540	18961540	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	89	327	0	ENST00000262803.5:c.673G>C	p.Asp225His	p.D225H	ENST00000262803	NM_002911.3	225	Gac/Cac																																																																														
EPAS1	0	MSKCC	GRCh37	2	46607402	46607402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	294	583	0	ENST00000263734.3:c.1591C>T	p.Pro531Ser	p.P531S	ENST00000263734	NM_001430.4	531	Ccc/Tcc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	287	732	0	ENST00000269571.5:c.2332_2340dupGGCTCCCCA	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120794	94120794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	54	543	0	ENST00000369303.4:c.257G>A	p.Arg86Gln	p.R86Q	ENST00000369303	NM_004440.3	86	cGg/cAg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912291	32912291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	36	556	0	ENST00000380152.3:c.3799G>A	p.Asp1267Asn	p.D1267N	ENST00000380152		1267	Gat/Aat																																																																														
DICER1	0	MSKCC	GRCh37	14	95562606	95562606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	40	376	0	ENST00000343455.3:c.4651G>C	p.Glu1551Gln	p.E1551Q	ENST00000343455	NM_177438.2	1551	Gag/Cag																																																																														
RNF43	0	MSKCC	GRCh37	17	56448352	56448352	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	57	748	0	ENST00000407977.2:c.295C>G	p.Leu99Val	p.L99V	ENST00000407977		99	Ctg/Gtg																																																																														
AGO2	0	MSKCC	GRCh37	8	141559255	141559255	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	71	649	1	ENST00000220592.5:c.1546C>T	p.Gln516Ter	p.Q516*	ENST00000220592	NM_012154.3	516	Cag/Tag																																																																														
AR	0	MSKCC	GRCh37	X	66766208	66766208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	65	380	0	ENST00000374690.3:c.1220G>C	p.Arg407Pro	p.R407P	ENST00000374690	NM_000044.3	407	cGc/cCc																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	108	695	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	201	432	2	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	77	533	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	31	420	1	ENST00000375023.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000375023	NM_004557.3	1836	Gag/Aag																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31394052	31394052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	61	599	0	ENST00000328111.2:c.2339C>T	p.Ser780Leu	p.S780L	ENST00000328111	NM_006892.3	780	tCg/tTg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120466580	120466580	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	148	444	0	ENST00000256646.2:c.4539C>G	p.Phe1513Leu	p.F1513L	ENST00000256646	NM_024408.3	1513	ttC/ttG																																																																														
PTEN	0	MSKCC	GRCh37	10	89624275	89624275	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	64	523	0	ENST00000371953.3:c.49C>G	p.Gln17Glu	p.Q17E	ENST00000371953	NM_000314.4	17	Caa/Gaa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440534	49440534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1503	134	915	0	ENST00000301067.7:c.4276G>C	p.Glu1426Gln	p.E1426Q	ENST00000301067	NM_003482.3	1426	Gag/Cag																																																																														
MGA	0	MSKCC	GRCh37	15	42028438	42028438	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	52	421	1	ENST00000219905.7:c.3976C>T	p.Gln1326Ter	p.Q1326*	ENST00000219905	NM_001164273.1	1326	Cag/Tag																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472473	88472473	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	122	660	0	ENST00000360948.2:c.2082G>C	p.Lys694Asn	p.K694N	ENST00000360948	NM_001012338.2	694	aaG/aaC																																																																														
SOX9	0	MSKCC	GRCh37	17	70119881	70119881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	134	748	0	ENST00000245479.2:c.883G>C	p.Asp295His	p.D295H	ENST00000245479	NM_000346.3	295	Gac/Cac																																																																														
DOT1L	0	MSKCC	GRCh37	19	2207631	2207631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	105	748	0	ENST00000398665.3:c.915G>C	p.Trp305Cys	p.W305C	ENST00000398665	NM_032482.2	305	tgG/tgC																																																																														
CARM1	0	MSKCC	GRCh37	19	11030557	11030557	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	186	639	0	ENST00000327064.4:c.1111G>C	p.Glu371Gln	p.E371Q	ENST00000327064	NM_199141.1	371	Gaa/Caa																																																																														
CALR	0	MSKCC	GRCh37	19	13051192	13051192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	100	514	0	ENST00000316448.5:c.628G>A	p.Asp210Asn	p.D210N	ENST00000316448	NM_004343.3	210	Gat/Aat																																																																														
CUL3	0	MSKCC	GRCh37	2	225378291	225378291	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	103	631	0	ENST00000264414.4:c.604G>T	p.Glu202Ter	p.E202*	ENST00000264414	NM_003590.4	202	Gaa/Taa																																																																														
KDR	0	MSKCC	GRCh37	4	55981164	55981164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1256	113	608	1	ENST00000263923.4:c.535T>C	p.Trp179Arg	p.W179R	ENST00000263923	NM_002253.2	179	Tgg/Cgg																																																																														
MSH3	0	MSKCC	GRCh37	5	79968660	79968660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	91	597	0	ENST00000265081.6:c.1010C>G	p.Ser337Cys	p.S337C	ENST00000265081	NM_002439.4	337	tCt/tGt																																																																														
RAD50	0	MSKCC	GRCh37	5	131893068	131893068	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	101	400	0	ENST00000265335.6:c.52G>C	p.Glu18Gln	p.E18Q	ENST00000265335		18	Gag/Cag																																																																														
HIST1H3A	0	MSKCC	GRCh37	6	26020742	26020742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	26	191	0	ENST00000357647.3:c.25C>T	p.Arg9Trp	p.R9W	ENST00000357647	NM_003529.2	9	Cgg/Tgg																																																																														
ROS1	0	MSKCC	GRCh37	6	117709172	117709174	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	167	442	0	ENST00000368508.3:c.1783_1785del	p.Ile595del	p.I595del	ENST00000368508	NM_002944.2	595	ATT/-																																																																														
GATA1	0	MSKCC	GRCh37	X	48650575	48650575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	275	866	0	ENST00000376670.3:c.545C>T	p.Ser182Leu	p.S182L	ENST00000376670	NM_002049.3	182	tCa/tTa																																																																														
MED12	0	MSKCC	GRCh37	X	70360490	70360490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	146	913	1	ENST00000374080.3:c.6050C>T	p.Ser2017Leu	p.S2017L	ENST00000374080		2017	tCa/tTa																																																																														
STAG2	0	MSKCC	GRCh37	X	123182858	123182858	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	54	453	0	ENST00000218089.9:c.823C>G	p.Gln275Glu	p.Q275E	ENST00000218089	NM_001042749.1	275	Cag/Gag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	205	630	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ATM	0	MSKCC	GRCh37	11	108200946	108200946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	104	271	0	ENST00000278616.4:c.7313C>G	p.Thr2438Arg	p.T2438R	ENST00000278616	NM_000051.3	2438	aCa/aGa																																																																														
CCNE1	0	MSKCC	GRCh37	19	30308353	30308353	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	40	669	0	ENST00000262643.3:c.367A>C	p.Lys123Gln	p.K123Q	ENST00000262643	NM_001238.2	123	Aag/Cag																																																																														
CIC	0	MSKCC	GRCh37	19	42793186	42793186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	420	753	1	ENST00000575354.2:c.1078G>A	p.Val360Ile	p.V360I	ENST00000575354	NM_015125.3	360	Gta/Ata																																																																														
PARK2	0	MSKCC	GRCh37	6	162206909	162206909	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150562946		P-0017021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	35	381	0	ENST00000366898.1:c.766C>T	p.Arg256Cys	p.R256C	ENST00000366898	NM_004562.2	256	Cgc/Tgc																																																																														
XIAP	0	MSKCC	GRCh37	X	123026603	123026603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	144	719	0	ENST00000355640.3:c.1079C>A	p.Pro360Gln	p.P360Q	ENST00000355640		360	cCa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	437	895	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	197	543	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	192	539	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
EGFR	0	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	321	686	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt																																																																														
FLT4	0	MSKCC	GRCh37	5	180048788	180048788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	296	864	0	ENST00000261937.6:c.1774C>T	p.Arg592Cys	p.R592C	ENST00000261937	NM_182925.4	592	Cgc/Tgc																																																																														
RBM10	0	MSKCC	GRCh37	X	47044541	47044541	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	501	439	1	ENST00000329236.7:c.1804C>T	p.Arg602Ter	p.R602*	ENST00000329236	NM_001204466.1	602	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105733	27105827	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGAAAATGATGAGGAGATAGCCTTTTCAGGCAAGGACAAGCCAGCTTCAGAGAATAGTGAGGAGAAGCTGATCAGTAAGTTTGACAAGCTTCC	GTTGAAAATGATGAGGAGATAGCCTTTTCAGGCAAGGACAAGCCAGCTTCAGAGAATAGTGAGGAGAAGCTGATCAGTAAGTTTGACAAGCTTCC	-			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	135	335	0	ENST00000324856.7:c.5344_5438del	p.Val1782SerfsTer8	p.V1782Sfs*8	ENST00000324856	NM_006015.4	1782	GTTGAAAATGATGAGGAGATAGCCTTTTCAGGCAAGGACAAGCCAGCTTCAGAGAATAGTGAGGAGAAGCTGATCAGTAAGTTTGACAAGCTTCCa/a																																																																														
GATA3	0	MSKCC	GRCh37	10	8115763	8115763	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	158	890	0	ENST00000346208.3:c.1109G>C	p.Ser370Thr	p.S370T	ENST00000346208		370	aGc/aCc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710682	114710683	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	246	610	1	ENST00000543371.1:c.169_170del	p.Asn57GlnfsTer39	p.N57Qfs*39	ENST00000543371	NM_001198531.1	56	cAA/c																																																																														
NF1	0	MSKCC	GRCh37	17	29541588	29541588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	118	561	0	ENST00000358273.4:c.1514del	p.Lys505SerfsTer21	p.K505Sfs*21	ENST00000358273	NM_001042492.2	504	ccA/cc																																																																														
SOS1	0	MSKCC	GRCh37	2	39281892	39281892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	277	809	0	ENST00000402219.2:c.583A>G	p.Thr195Ala	p.T195A	ENST00000402219	NM_005633.3	195	Acc/Gcc																																																																														
SETD2	0	MSKCC	GRCh37	3	47161949	47161949	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	69	420	0	ENST00000409792.3:c.4177T>G	p.Leu1393Val	p.L1393V	ENST00000409792	NM_014159.6	1393	Tta/Gta																																																																														
SYK	0	MSKCC	GRCh37	9	93624558	93624558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	339	712	1	ENST00000375746.1:c.649C>T	p.Arg217Cys	p.R217C	ENST00000375746	NM_001174167.1	217	Cgc/Tgc																																																																														
ABL1	0	MSKCC	GRCh37	9	133760979	133760979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	237	856	0	ENST00000318560.5:c.3302C>T	p.Pro1101Leu	p.P1101L	ENST00000318560	NM_005157.4	1101	cCg/cTg																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	104	454	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1295	214	899	0	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																														
IGF1R	0	MSKCC	GRCh37	15	99192881	99192881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	57	409	0	ENST00000268035.6:c.71C>T	p.Ser24Leu	p.S24L	ENST00000268035	NM_000875.3	24	tCg/tTg																																																																														
JAK1	0	MSKCC	GRCh37	1	65304149	65304149	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	88	493	0	ENST00000342505.4:c.2966A>C	p.Lys989Thr	p.K989T	ENST00000342505	NM_002227.2	989	aAg/aCg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120510124	120510124	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	201	531	0	ENST00000256646.2:c.1385C>G	p.Ser462Ter	p.S462*	ENST00000256646	NM_024408.3	462	tCa/tGa																																																																														
GATA3	0	MSKCC	GRCh37	10	8111495	8111496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGA			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	242	623	0	ENST00000346208.3:c.982_985dup	p.Arg329MetfsTer24	p.R329Mfs*24	ENST00000346208		327	-/TGGA																																																																														
RET	0	MSKCC	GRCh37	10	43622120	43622120	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	103	566	2	ENST00000355710.3:c.3142delC	p.Leu1048SerfsTer61	p.L1048Sfs*61	ENST00000355710	NM_020975.4	1046	gCc/gc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434271	49434271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	305	917	2	ENST00000301067.7:c.7282C>T	p.Arg2428Trp	p.R2428W	ENST00000301067	NM_003482.3	2428	Cgg/Tgg																																																																														
JAK3	0	MSKCC	GRCh37	19	17945815	17945815	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	178	551	0	ENST00000458235.1:c.2048-3C>T		p.X683_splice	ENST00000458235	NM_000215.3	683																																																																															
PREX2	0	MSKCC	GRCh37	8	68965430	68965430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	77	719	0	ENST00000288368.4:c.1042G>A	p.Glu348Lys	p.E348K	ENST00000288368	NM_024870.2	348	Gag/Aag																																																																														
AGO2	0	MSKCC	GRCh37	8	141557591	141557591	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1598	240	709	0	ENST00000220592.5:c.1724A>T	p.Asn575Ile	p.N575I	ENST00000220592	NM_012154.3	575	aAc/aTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	31	585	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	169	513	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	143	332	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	143	332	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	143	332	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
NFE2L2	0	MSKCC	GRCh37	2	178098954	178098954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	31	325	0	ENST00000397062.3:c.91G>C	p.Gly31Arg	p.G31R	ENST00000397062	NM_006164.4	31	Gga/Cga																																																																														
POLE	0	MSKCC	GRCh37	12	133253974	133253974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	133	548	1	ENST00000320574.5:c.776G>T	p.Arg259Leu	p.R259L	ENST00000320574	NM_006231.2	259	cGc/cTc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4094498	4094498	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	172	735	0	ENST00000262948.5:c.1047-2A>C		p.X349_splice	ENST00000262948	NM_030662.3	349																																																																															
JAK3	0	MSKCC	GRCh37	19	17954651	17954651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	254	749	0	ENST00000458235.1:c.243G>C	p.Trp81Cys	p.W81C	ENST00000458235	NM_000215.3	81	tgG/tgC																																																																														
PRKCI	0	MSKCC	GRCh37	3	170009641	170009641	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1338	194	456	2	ENST00000295797.4:c.1204-1G>T		p.X402_splice	ENST00000295797	NM_002740.5	402																																																																															
FANCC	0	MSKCC	GRCh37	9	97876938	97876938	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	181	453	0	ENST00000289081.3:c.1127G>C	p.Arg376Thr	p.R376T	ENST00000289081	NM_000136.2	376	aGa/aCa																																																																														
MGA	0	MSKCC	GRCh37	15	42042806	42042806	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	48	256	0	ENST00000219905.7:c.7001T>G	p.Val2334Gly	p.V2334G	ENST00000219905	NM_001164273.1	2334	gTa/gGa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591146	67591156	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTGATGTAA	ACTTGATGTAA	G			P-0017031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	87	362	0	ENST00000274335.5:c.1739_1745+4delinsG		p.X580_splice	ENST00000274335		580																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	247	426	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	349	640	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59763254	59763254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			6777	6102	686	1	ENST00000259008.2:c.2848A>G	p.Lys950Glu	p.K950E	ENST00000259008	NM_032043.2	950	Aaa/Gaa																																																																														
BRIP1	0	MSKCC	GRCh37	17	59924539	59924539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1452	5450	455	0	ENST00000259008.2:c.550G>A	p.Asp184Asn	p.D184N	ENST00000259008	NM_032043.2	184	Gat/Aat																																																																														
BRIP1	0	MSKCC	GRCh37	17	59934430	59934430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	2789	311	0	ENST00000259008.2:c.368C>T	p.Ser123Leu	p.S123L	ENST00000259008	NM_032043.2	123	tCa/tTa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952152	178952162	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	AAAAGATAACT	AAAAGATAACT	-			P-0017034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	205	355	0	ENST00000263967.3:c.3207_*10delAAAAGATAACT		p.*1069fs*	ENST00000263967	NM_006218.2	1069																																																																															
RASA1	0	MSKCC	GRCh37	5	86675576	86675576	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	240	429	0	ENST00000274376.6:c.2512A>C	p.Asn838His	p.N838H	ENST00000274376	NM_002890.2	838	Aat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	240	463	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68856113	68856113	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	266	580	0	ENST00000261769.5:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000261769	NM_004360.3	641	Cag/Tag																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50480082	50480082	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	101	495	0	ENST00000394963.4:c.316C>T	p.Gln106Ter	p.Q106*	ENST00000394963	NM_003076.4	106	Cag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151880169	151880169	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	273	498	1	ENST00000262189.6:c.5155C>T	p.Gln1719Ter	p.Q1719*	ENST00000262189	NM_170606.2	1719	Cag/Tag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44879852	44879852	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0017036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	168	320	0	ENST00000377967.4:c.444-3C>T		p.X148_splice	ENST00000377967	NM_021140.2	148																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	269	581	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056132	26056132	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	68	419	0	ENST00000343677.2:c.525G>C	p.Lys175Asn	p.K175N	ENST00000343677	NM_005319.3	175	aaG/aaC																																																																														
FANCA	0	MSKCC	GRCh37	16	89857881	89857881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	101	632	3	ENST00000389301.3:c.1289C>T	p.Ala430Val	p.A430V	ENST00000389301	NM_000135.2	430	gCg/gTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858192	9858192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	67	498	0	ENST00000330684.3:c.3209G>A	p.Cys1070Tyr	p.C1070Y	ENST00000330684	NM_001134407.1	1070	tGc/tAc																																																																														
RARA	0	MSKCC	GRCh37	17	38487520	38487520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	65	491	1	ENST00000254066.5:c.50A>G	p.Asn17Ser	p.N17S	ENST00000254066	NM_000964.3	17	aAt/aGt																																																																														
SOX9	0	MSKCC	GRCh37	17	70119710	70119710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1341	97	782	1	ENST00000245479.2:c.712C>A	p.Pro238Thr	p.P238T	ENST00000245479	NM_000346.3	238	Ccc/Acc																																																																														
RBM10	0	MSKCC	GRCh37	X	47041007	47041008	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	289	316	0	ENST00000329236.7:c.1304dup	p.Ala436GlyfsTer4	p.A436Gfs*4	ENST00000329236	NM_001204466.1	435	gag/gAag																																																																														
ARAF	0	MSKCC	GRCh37	X	47428127	47428127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	104	311	0	ENST00000377045.4:c.1087C>G	p.His363Asp	p.H363D	ENST00000377045	NM_001654.4	363	Cat/Gat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	332	530	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	408	402	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175060	112175060	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	93	193	0	ENST00000257430.4:c.3769G>T	p.Glu1257Ter	p.E1257*	ENST00000257430	NM_000038.5	1257	Gaa/Taa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344383	118344383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	112	259	0	ENST00000534358.1:c.2509C>T	p.Pro837Ser	p.P837S	ENST00000534358	NM_005933.3	837	Cct/Tct																																																																														
AXIN1	0	MSKCC	GRCh37	16	343627	343627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	262	586	0	ENST00000262320.3:c.2047G>A	p.Val683Met	p.V683M	ENST00000262320	NM_003502.3	683	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	440	656	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	353	512	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
AXIN1	0	MSKCC	GRCh37	16	347864	347864	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	271	749	0	ENST00000262320.3:c.1642G>T	p.Glu548Ter	p.E548*	ENST00000262320	NM_003502.3	548	Gag/Tag																																																																														
RAD52	0	MSKCC	GRCh37	12	1039241	1039241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	461	588	0	ENST00000358495.3:c.256C>A	p.His86Asn	p.H86N	ENST00000358495	NM_134424.2	86	Cac/Aac																																																																														
RXRA	0	MSKCC	GRCh37	9	137300845	137300845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	164	679	0	ENST00000481739.1:c.490C>A	p.Arg164Ser	p.R164S	ENST00000481739	NM_002957.4	164	Cgc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	567	409	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SYK	0	MSKCC	GRCh37	9	93627351	93627351	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139520862		P-0017041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	188	446	0	ENST00000375746.1:c.818G>A	p.Arg273His	p.R273H	ENST00000375746	NM_001174167.1	273	cGt/cAt																																																																														
MEN1	0	MSKCC	GRCh37	11	64577379	64577379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	97	464	0	ENST00000337652.1:c.203C>T	p.Ala68Val	p.A68V	ENST00000337652	NM_130803.2	68	gCc/gTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426879	49426879	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	319	271	0	ENST00000301067.7:c.11609del	p.Met3870ArgfsTer11	p.M3870Rfs*11	ENST00000301067	NM_003482.3	3870	aTg/ag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602792	10602792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	272	597	0	ENST00000171111.5:c.786C>G	p.Phe262Leu	p.F262L	ENST00000171111	NM_203500.1	262	ttC/ttG																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670377	134670377	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	75	387	1	ENST00000398015.3:c.288C>A	p.Cys96Ter	p.C96*	ENST00000398015	NM_004441.4	96	tgC/tgA																																																																														
IL7R	0	MSKCC	GRCh37	5	35873700	35873700	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	250	434	0	ENST00000303115.3:c.656A>T	p.Glu219Val	p.E219V	ENST00000303115	NM_002185.3	219	gAa/gTa																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463307	25463307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	186	421	1	ENST00000264709.3:c.2186G>A	p.Arg729Gln	p.R729Q	ENST00000264709	NM_175629.2	729	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	376	482	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
TCEB1	0	MSKCC	GRCh37	8	74859029	74859029	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	141	391	0	ENST00000284811.8:c.175G>C	p.Glu59Gln	p.E59Q	ENST00000284811		59	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	549	845	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
AKT2	0	MSKCC	GRCh37	19	40748487	40748487	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143335817		P-0017044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2521	188	674	2	ENST00000392038.2:c.395C>T	p.Thr132Met	p.T132M	ENST00000392038	NM_001626.4	132	aCg/aTg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111855996	111855996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	156	479	0	ENST00000341259.2:c.47C>T	p.Ser16Leu	p.S16L	ENST00000341259	NM_005475.2	16	tCa/tTa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198257141	198257141	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	99	541	0	ENST00000335508.6:c.3801A>C	p.Lys1267Asn	p.K1267N	ENST00000335508	NM_012433.2	1267	aaA/aaC																																																																														
DROSHA	0	MSKCC	GRCh37	5	31401565	31401565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1394	660	594	0	ENST00000344624.3:c.4099G>A	p.Asp1367Asn	p.D1367N	ENST00000344624		1367	Gat/Aat																																																																														
KMT2C	0	MSKCC	GRCh37	7	151843801	151843802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	437	529	0	ENST00000262189.6:c.13913dup	p.Leu4638PhefsTer12	p.L4638Ffs*12	ENST00000262189	NM_170606.2	4638	ttg/ttTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	281	322	0				ENST00000310581	NM_198253.2																																																																																
RAD50	0	MSKCC	GRCh37	5	131911514	131911514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143802516		P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	234	370	0	ENST00000265335.6:c.259C>T	p.Arg87Cys	p.R87C	ENST00000265335		87	Cgt/Tgt																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367321	50367321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1259	198	319	1	ENST00000331340.3:c.128G>A	p.Gly43Glu	p.G43E	ENST00000331340	NM_006060.4	43	gGa/gAa																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467675	50467675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759124417		P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1406	663	625	0	ENST00000331340.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000331340	NM_006060.4	304	Gaa/Aaa																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	1545	511	2	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121416876	121416876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	435	720	3	ENST00000257555.6:c.305C>T	p.Ala102Val	p.A102V	ENST00000257555		102	gCc/gTc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5218804	5218804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	127	478	0	ENST00000357368.4:c.3929C>T	p.Pro1310Leu	p.P1310L	ENST00000357368	NM_002850.3	1310	cCc/cTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097629	11097629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	443	664	0	ENST00000344626.4:c.809C>T	p.Pro270Leu	p.P270L	ENST00000344626	NM_003072.3	270	cCc/cTc																																																																														
ROS1	0	MSKCC	GRCh37	6	117631271	117631271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	263	407	0	ENST00000368508.3:c.6407G>A	p.Gly2136Glu	p.G2136E	ENST00000368508	NM_002944.2	2136	gGa/gAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9560824	9560824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	209	316	0	ENST00000353224.5:c.958C>T	p.Arg320Cys	p.R320C	ENST00000353224	NM_177990.2	320	Cgc/Tgc																																																																														
INSR	0	MSKCC	GRCh37	19	7143093	7143093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	104	428	0	ENST00000302850.5:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000302850	NM_000208.2	759	cGg/cAg																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	365	696	0	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106020	27106021	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	208	402	0	ENST00000324856.7:c.5631_5632delCCinsTT	p.Pro1878Ser	p.P1878S	ENST00000324856	NM_006015.4	1877	gcCCct/gcTTct																																																																														
JUN	0	MSKCC	GRCh37	1	59248043	59248043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	146	285	0	ENST00000371222.2:c.700G>C	p.Glu234Gln	p.E234Q	ENST00000371222	NM_002228.3	234	Gag/Cag																																																																														
RET	0	MSKCC	GRCh37	10	43604514	43604514	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	286	550	0	ENST00000355710.3:c.1099A>C	p.Asn367His	p.N367H	ENST00000355710	NM_020975.4	367	Aac/Cac																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310950	123310950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	351	264	0	ENST00000358487.5:c.478G>A	p.Glu160Lys	p.E160K	ENST00000358487	NM_000141.4	160	Gaa/Aaa																																																																														
FGF3	0	MSKCC	GRCh37	11	69633564	69633685	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGCCGGGGCGCCCCGCCAAGGTGCTCGTAGACGCCGCCACGGCCGCCCGCATCGCGCCGCAACCGCGCCCCAGGGCCCGCTGCGGGCCAGCCGGGCTCCAGCAGGCTGAGCAGTAGCA	GCGGCGCCGGGGCGCCCCGCCAAGGTGCTCGTAGACGCCGCCACGGCCGCCCGCATCGCGCCGCAACCGCGCCCCAGGGCCCGCTGCGGGCCAGCCGGGCTCCAGCAGGCTGAGCAGTAGCA	-			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	22	216	0	ENST00000334134.2:c.17_138delTGCTACTGCTCAGCCTGCTGGAGCCCGGCTGGCCCGCAGCGGGCCCTGGGGCGCGGTTGCGGCGCGATGCGGGCGGCCGTGGCGGCGTCTACGAGCACCTTGGCGGGGCGCCCCGGCGCCGC	p.Leu6GlnfsTer81	p.L6Qfs*81	ENST00000334134	NM_005247.2	6	cTGCTACTGCTCAGCCTGCTGGAGCCCGGCTGGCCCGCAGCGGGCCCTGGGGCGCGGTTGCGGCGCGATGCGGGCGGCCGTGGCGGCGTCTACGAGCACCTTGGCGGGGCGCCCCGGCGCCGC/c																																																																														
POLE	0	MSKCC	GRCh37	12	133208960	133208961	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	248	442	1	ENST00000320574.5:c.6270_6271delCCinsTT	p.Pro2091Ser	p.P2091S	ENST00000320574	NM_006231.2	2090	ctCCcc/ctTTcc																																																																														
FLT3	0	MSKCC	GRCh37	13	28622451	28622451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	255	472	1	ENST00000241453.7:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000241453	NM_004119.2	389	tCa/tTa																																																																														
MGA	0	MSKCC	GRCh37	15	42054037	42054037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	188	385	0	ENST00000219905.7:c.7499C>T	p.Ser2500Leu	p.S2500L	ENST00000219905	NM_001164273.1	2500	tCg/tTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347750	89347750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	429	327	0	ENST00000301030.4:c.5200G>A	p.Asp1734Asn	p.D1734N	ENST00000301030	NM_001256183.1	1734	Gac/Aac																																																																														
NF1	0	MSKCC	GRCh37	17	29554565	29554565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	475	347	0	ENST00000358273.4:c.2350T>C	p.Trp784Arg	p.W784R	ENST00000358273	NM_001042492.2	784	Tgg/Cgg																																																																														
RAD51C	0	MSKCC	GRCh37	17	56801451	56801451	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	654	468	0	ENST00000337432.4:c.955C>T	p.Arg319Ter	p.R319*	ENST00000337432	NM_058216.2	319	Cga/Tga																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15296322	15296322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	311	440	1	ENST00000263388.2:c.2120G>A	p.Gly707Asp	p.G707D	ENST00000263388	NM_000435.2	707	gGc/gAc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223545	36223545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	441	691	0	ENST00000222270.7:c.6095C>T	p.Ser2032Phe	p.S2032F	ENST00000222270	NM_014727.1	2032	tCc/tTc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25973238	25973238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	165	240	0	ENST00000435504.4:c.1187C>T	p.Pro396Leu	p.P396L	ENST00000435504		396	cCc/cTc																																																																														
TOP1	0	MSKCC	GRCh37	20	39729993	39729993	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	246	470	0	ENST00000361337.2:c.1308G>C	p.Lys436Asn	p.K436N	ENST00000361337	NM_003286.2	436	aaG/aaC																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944387	40944387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	197	337	1	ENST00000373198.4:c.2115C>A	p.Phe705Leu	p.F705L	ENST00000373198	NM_133170.3	705	ttC/ttA																																																																														
BAP1	0	MSKCC	GRCh37	3	52438560	52438560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	327	402	0	ENST00000460680.1:c.1159C>T	p.Pro387Ser	p.P387S	ENST00000460680	NM_004656.3	387	Cca/Tca																																																																														
EPHB1	0	MSKCC	GRCh37	3	134898764	134898764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	156	312	0	ENST00000398015.3:c.1822C>G	p.Arg608Gly	p.R608G	ENST00000398015	NM_004441.4	608	Cgg/Ggg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55141066	55141066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	202	320	0	ENST00000257290.5:c.1712A>G	p.Glu571Gly	p.E571G	ENST00000257290	NM_006206.4	571	gAa/gGa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66270125	66270125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	785	493	0	ENST00000273854.3:c.1757T>C	p.Leu586Ser	p.L586S	ENST00000273854	NM_004439.5	586	tTg/tCg																																																																														
IL7R	0	MSKCC	GRCh37	5	35875634	35875634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	206	443	2	ENST00000303115.3:c.821C>T	p.Pro274Leu	p.P274L	ENST00000303115	NM_002185.3	274	cCc/cTc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178364	56178364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	148	266	0	ENST00000399503.3:c.3337T>C	p.Phe1113Leu	p.F1113L	ENST00000399503	NM_005921.1	1113	Ttc/Ctc																																																																														
NSD1	0	MSKCC	GRCh37	5	176715863	176715863	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	368	507	0	ENST00000439151.2:c.6195T>G	p.Asn2065Lys	p.N2065K	ENST00000439151	NM_022455.4	2065	aaT/aaG																																																																														
MDC1	0	MSKCC	GRCh37	6	30680869	30680869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1659	424	625	1	ENST00000376406.3:c.850C>T	p.Pro284Ser	p.P284S	ENST00000376406	NM_014641.2	284	Cca/Tca																																																																														
PRDM1	0	MSKCC	GRCh37	6	106554828	106554828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	75	364	1	ENST00000369096.4:c.1945C>T	p.His649Tyr	p.H649Y	ENST00000369096	NM_001198.3	649	Cac/Tac																																																																														
ROS1	0	MSKCC	GRCh37	6	117677936	117677936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	255	433	0	ENST00000368508.3:c.3997G>A	p.Glu1333Lys	p.E1333K	ENST00000368508	NM_002944.2	1333	Gaa/Aaa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099889	157099889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	353	560	3	ENST00000346085.5:c.826G>A	p.Ala276Thr	p.A276T	ENST00000346085	NM_020732.3	276	Gcc/Acc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099895	157099895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	375	561	0	ENST00000346085.5:c.832G>T	p.Gly278Cys	p.G278C	ENST00000346085	NM_020732.3	278	Ggc/Tgc																																																																														
HGF	0	MSKCC	GRCh37	7	81392143	81392143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	217	237	0	ENST00000222390.5:c.134C>T	p.Ser45Leu	p.S45L	ENST00000222390	NM_000601.4	45	tCa/tTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151884505	151884505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1403	166	322	0	ENST00000262189.6:c.4850C>T	p.Ser1617Leu	p.S1617L	ENST00000262189	NM_170606.2	1617	tCa/tTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151947944	151947944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1824	212	454	0	ENST00000262189.6:c.1729C>T	p.Pro577Ser	p.P577S	ENST00000262189	NM_170606.2	577	Cca/Tca																																																																														
LYN	0	MSKCC	GRCh37	8	56922532	56922532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	232	452	0	ENST00000519728.1:c.1402T>C	p.Cys468Arg	p.C468R	ENST00000519728	NM_002350.3	468	Tgc/Cgc																																																																														
PREX2	0	MSKCC	GRCh37	8	68864769	68864769	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	187	324	0	ENST00000288368.4:c.140C>T	p.Ser47Leu	p.S47L	ENST00000288368	NM_024870.2	47	tCg/tTg																																																																														
PREX2	0	MSKCC	GRCh37	8	69104642	69104642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	293	490	3	ENST00000288368.4:c.4486G>A	p.Ala1496Thr	p.A1496T	ENST00000288368	NM_024870.2	1496	Gct/Act																																																																														
PTPRD	0	MSKCC	GRCh37	9	8436684	8436684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	190	319	2	ENST00000356435.5:c.3994G>A	p.Ala1332Thr	p.A1332T	ENST00000356435		1332	Gct/Act																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98222022	98222022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	226	352	0	ENST00000331920.6:c.2747C>T	p.Pro916Leu	p.P916L	ENST00000331920	NM_000264.3	916	cCc/cTc																																																																														
ABL1	0	MSKCC	GRCh37	9	133760022	133760022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	517	718	1	ENST00000318560.5:c.2345C>T	p.Pro782Leu	p.P782L	ENST00000318560	NM_005157.4	782	cCt/cTt																																																																														
AR	0	MSKCC	GRCh37	X	66766497	66766497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	315	350	0	ENST00000374690.3:c.1509G>A	p.Trp503Ter	p.W503*	ENST00000374690	NM_000044.3	503	tgG/tgA																																																																														
MED12	0	MSKCC	GRCh37	X	70357157	70357157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	273	268	0	ENST00000374080.3:c.5672C>T	p.Ser1891Phe	p.S1891F	ENST00000374080		1891	tCc/tTc																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123480509	123480509	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	136	190	2	ENST00000371139.4:c.17T>C	p.Val6Ala	p.V6A	ENST00000371139	NM_001114937.2	6	gTg/gCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	98	344	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	0	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2062	5778	689	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	109	732	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
RARA	0	MSKCC	GRCh37	17	38512450	38512450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	126	755	1	ENST00000254066.5:c.1361G>A	p.Arg454Lys	p.R454K	ENST00000254066	NM_000964.3	454	aGa/aAa																																																																														
ATM	0	MSKCC	GRCh37	11	108186754	108186754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	89	607	0	ENST00000278616.4:c.6112C>T	p.His2038Tyr	p.H2038Y	ENST00000278616	NM_000051.3	2038	Cac/Tac																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730828	40730828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	105	700	0	ENST00000373198.4:c.3707G>A	p.Cys1236Tyr	p.C1236Y	ENST00000373198	NM_133170.3	1236	tGc/tAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47041190	47041190	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	217	874	1	ENST00000329236.7:c.1384C>T	p.Gln462Ter	p.Q462*	ENST00000329236	NM_001204466.1	462	Cag/Tag																																																																														
CSF3R	0	MSKCC	GRCh37	1	36933819	36933819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	57	446	0	ENST00000361632.4:c.1580C>A	p.Pro527His	p.P527H	ENST00000361632		527	cCc/cAc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118380661	118380661	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	35	379	0	ENST00000534358.1:c.10901-2A>G		p.X3634_splice	ENST00000534358	NM_005933.3	3634																																																																															
KDM5A	0	MSKCC	GRCh37	12	430221	430221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	82	445	0	ENST00000399788.2:c.2481G>T	p.Lys827Asn	p.K827N	ENST00000399788	NM_001042603.1	827	aaG/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	112	620	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032044	10032044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	61	509	0	ENST00000330684.3:c.779T>C	p.Leu260Ser	p.L260S	ENST00000330684	NM_001134407.1	260	tTg/tCg																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	79	530	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
MSI2	0	MSKCC	GRCh37	17	55478800	55478800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	53	507	0	ENST00000284073.2:c.373G>T	p.Asp125Tyr	p.D125Y	ENST00000284073	NM_138962.2	125	Gat/Tat																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	58	503	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc																																																																														
RAF1	0	MSKCC	GRCh37	3	12645711	12645711	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	22	225	0	ENST00000251849.4:c.758A>G	p.Gln253Arg	p.Q253R	ENST00000251849	NM_002880.3	253	cAg/cGg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390931	89390931	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	38	446	0	ENST00000336596.2:c.997A>G	p.Ile333Val	p.I333V	ENST00000336596	NM_005233.5	333	Atc/Gtc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38194902	38194902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	94	816	0	ENST00000317025.8:c.831G>T	p.Lys277Asn	p.K277N	ENST00000317025	NM_023034.1	277	aaG/aaT																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	138	218	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	292	500	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	394	741	0	ENST00000269305.4:c.843C>A	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaA																																																																														
PLK2	0	MSKCC	GRCh37	5	57752411	57752412	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0017050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	95	205	0	ENST00000274289.3:c.1161_1162delAG	p.Arg387SerfsTer3	p.R387Sfs*3	ENST00000274289	NM_006622.3	387	agAGtg/agtg																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	191	523	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49418670	49418670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	330	558	1	ENST00000301067.7:c.15844C>T	p.Arg5282Ter	p.R5282*	ENST00000301067	NM_003482.3	5282	Cga/Tga																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45655173	45655173	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	48	360	0	ENST00000407780.3:c.679A>G	p.Thr227Ala	p.T227A	ENST00000407780	NM_001283052.1	227	Act/Gct																																																																														
RICTOR	0	MSKCC	GRCh37	5	38959317	38959317	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	150	443	1	ENST00000357387.3:c.2158A>C	p.Ile720Leu	p.I720L	ENST00000357387	NM_152756.3	720	Att/Ctt																																																																														
RAD50	0	MSKCC	GRCh37	5	131926965	131926965	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	178	394	1	ENST00000265335.6:c.1502A>C	p.Lys501Thr	p.K501T	ENST00000265335		501	aAa/aCa																																																																														
NSD1	0	MSKCC	GRCh37	5	176562912	176562912	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	120	753	2	ENST00000439151.2:c.808C>T	p.Gln270Ter	p.Q270*	ENST00000439151	NM_022455.4	270	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	37	517	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	48	506	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
AGO2	0	MSKCC	GRCh37	8	141551301	141551301	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	58	684	0	ENST00000220592.5:c.1996T>A	p.Phe666Ile	p.F666I	ENST00000220592	NM_012154.3	666	Ttc/Atc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0017060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	101	352	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	258	410	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0017060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	219	349	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0017060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	204	618	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7577586	7577587	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0017060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	117	400	0	ENST00000269305.4:c.694_695del	p.Ile232ProfsTer7	p.I232Pfs*7	ENST00000269305	NM_001126112.2	232	ATc/c																																																																														
KMT2C	0	MSKCC	GRCh37	7	151871214	151871214	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0017065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	129	505	0	ENST00000262189.6:c.9374+2T>G		p.X3125_splice	ENST00000262189	NM_170606.2	3125																																																																															
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	20	421	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
AR	0	MSKCC	GRCh37	X	66937337	66937337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	25	173	0	ENST00000374690.3:c.2191G>A	p.Val731Met	p.V731M	ENST00000374690	NM_000044.3	731	Gtg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	174	159	1				ENST00000310581	NM_198253.2																																																																																
ERBB3	0	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1339	515	585	0	ENST00000267101.3:c.310G>C	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ctg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8733795	8733795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138127948		P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	297	382	1	ENST00000356435.5:c.49C>T	p.Arg17Cys	p.R17C	ENST00000356435		17	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1858	271	657	0	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22006075	22006075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	286	257	0	ENST00000276925.6:c.328G>A	p.Asp110Asn	p.D110N	ENST00000276925	NM_004936.3	110	Gat/Aat																																																																														
SPEN	0	MSKCC	GRCh37	1	16257569	16257569	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	391	559	0	ENST00000375759.3:c.4834G>C	p.Asp1612His	p.D1612H	ENST00000375759	NM_015001.2	1612	Gat/Cat																																																																														
AKT3	0	MSKCC	GRCh37	1	243809217	243809217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	252	427	0	ENST00000263826.5:c.407C>T	p.Ser136Phe	p.S136F	ENST00000263826	NM_005465.4	136	tCt/tTt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	432	502	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074183	8074183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	264	339	0	ENST00000377482.5:c.476C>T	p.Ser159Phe	p.S159F	ENST00000377482	NM_018948.3	159	tCt/tTt																																																																														
SPEN	0	MSKCC	GRCh37	1	16256888	16256888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1191	420	485	0	ENST00000375759.3:c.4153G>C	p.Asp1385His	p.D1385H	ENST00000375759	NM_015001.2	1385	Gat/Cat																																																																														
SPEN	0	MSKCC	GRCh37	1	16257995	16257995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	321	355	0	ENST00000375759.3:c.5260G>A	p.Asp1754Asn	p.D1754N	ENST00000375759	NM_015001.2	1754	Gac/Aac																																																																														
SPEN	0	MSKCC	GRCh37	1	16258394	16258394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1286	436	528	1	ENST00000375759.3:c.5659C>T	p.Leu1887Phe	p.L1887F	ENST00000375759	NM_015001.2	1887	Ctt/Ttt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435093	49435093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	278	275	0	ENST00000301067.7:c.6460G>C	p.Asp2154His	p.D2154H	ENST00000301067	NM_003482.3	2154	Gac/Cac																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434113	121434113	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	409	480	0	ENST00000257555.6:c.1004C>G	p.Ser335Ter	p.S335*	ENST00000257555		335	tCa/tGa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914056	32914056	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	273	502	0	ENST00000380152.3:c.5564C>G	p.Ser1855Ter	p.S1855*	ENST00000380152		1855	tCa/tGa																																																																														
RB1	0	MSKCC	GRCh37	13	48878148	48878148	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	37	60	0	ENST00000267163.4:c.100G>C	p.Glu34Gln	p.E34Q	ENST00000267163	NM_000321.2	34	Gag/Cag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748891	43748891	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1291	510	700	0	ENST00000382044.4:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000382044	NM_001141980.1	639	Cga/Tga																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727386	66727386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	110	235	0	ENST00000307102.5:c.102G>C	p.Gln34His	p.Q34H	ENST00000307102	NM_002755.3	34	caG/caC																																																																														
CBFB	0	MSKCC	GRCh37	16	67100616	67100616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	464	329	0	ENST00000412916.2:c.314G>A	p.Gly105Glu	p.G105E	ENST00000412916		105	gGa/gAa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81941350	81941350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1154	81	473	0	ENST00000359376.3:c.1528G>C	p.Glu510Gln	p.E510Q	ENST00000359376	NM_002661.3	510	Gaa/Caa																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	332	427	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
BRCA1	0	MSKCC	GRCh37	17	41244785	41244785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1439	459	551	0	ENST00000357654.3:c.2763G>C	p.Gln921His	p.Q921H	ENST00000357654	NM_007294.3	921	caG/caC																																																																														
KEAP1	0	MSKCC	GRCh37	19	10597486	10597486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1188	168	464	0	ENST00000171111.5:c.1717G>A	p.Asp573Asn	p.D573N	ENST00000171111	NM_203500.1	573	Gat/Aat																																																																														
JAK3	0	MSKCC	GRCh37	19	17945774	17945774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	374	472	0	ENST00000458235.1:c.2086C>T	p.Leu696Phe	p.L696F	ENST00000458235	NM_000215.3	696	Ctc/Ttc																																																																														
AXL	0	MSKCC	GRCh37	19	41765672	41765672	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1589	102	513	0	ENST00000301178.4:c.2548G>C	p.Asp850His	p.D850H	ENST00000301178	NM_021913.4	850	Gat/Cat																																																																														
CIC	0	MSKCC	GRCh37	19	42791509	42791509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1425	366	475	0	ENST00000575354.2:c.490C>G	p.Leu164Val	p.L164V	ENST00000575354	NM_015125.3	164	Cta/Gta																																																																														
EPAS1	0	MSKCC	GRCh37	2	46605127	46605127	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	122	404	0	ENST00000263734.3:c.1344G>C	p.Gln448His	p.Q448H	ENST00000263734	NM_001430.4	448	caG/caC																																																																														
CUL3	0	MSKCC	GRCh37	2	225367728	225367728	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	158	399	0	ENST00000264414.4:c.1439C>G	p.Ser480Ter	p.S480*	ENST00000264414	NM_003590.4	480	tCa/tGa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743936	40743936	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	265	366	0	ENST00000373198.4:c.3059G>C	p.Trp1020Ser	p.W1020S	ENST00000373198	NM_133170.3	1020	tGg/tCg																																																																														
EP300	0	MSKCC	GRCh37	22	41553304	41553304	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	398	483	0	ENST00000263253.7:c.3393T>A	p.Tyr1131Ter	p.Y1131*	ENST00000263253	NM_001429.3	1131	taT/taA																																																																														
FAT1	0	MSKCC	GRCh37	4	187539513	187539513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	222	290	0	ENST00000441802.2:c.8227C>G	p.Pro2743Ala	p.P2743A	ENST00000441802	NM_005245.3	2743	Cca/Gca																																																																														
FAT1	0	MSKCC	GRCh37	4	187540944	187540944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	241	246	0	ENST00000441802.2:c.6796G>A	p.Glu2266Lys	p.E2266K	ENST00000441802	NM_005245.3	2266	Gaa/Aaa																																																																														
RAD50	0	MSKCC	GRCh37	5	131973824	131973824	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	289	354	0	ENST00000265335.6:c.3527C>G	p.Ser1176Cys	p.S1176C	ENST00000265335		1176	tCt/tGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873299	151873299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	98	195	0	ENST00000262189.6:c.9239C>T	p.Ser3080Leu	p.S3080L	ENST00000262189	NM_170606.2	3080	tCa/tTa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737793	145737793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	151	414	0	ENST00000428558.2:c.3037G>A	p.Asp1013Asn	p.D1013N	ENST00000428558	NM_004260.3	1013	Gac/Aac																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738344	145738344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1418	208	530	0	ENST00000428558.2:c.2641G>C	p.Glu881Gln	p.E881Q	ENST00000428558	NM_004260.3	881	Gag/Cag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949128	44949128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	355	192	0	ENST00000377967.4:c.3689C>T	p.Ala1230Val	p.A1230V	ENST00000377967	NM_021140.2	1230	gCt/gTt																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22008907	22008910	+	missense_variant	Missense_Mutation	ONP	CATC	CATC	TATT			P-0017068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	257	393	0	ENST00000276925.6:c.43_46delinsAATA	p.Asp15_Glu16delinsAsnLys	p.D15_E16delinsNK	ENST00000276925	NM_004936.3	15	GATGag/AATAag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	36	122	0	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577093	7577094	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	328	543	0	ENST00000269305.4:c.844dup	p.Arg282ProfsTer24	p.R282Pfs*24	ENST00000269305	NM_001126112.2	282	cgg/cCgg																																																																														
ALK	0	MSKCC	GRCh37	2	29606627	29606627	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	130	442	0	ENST00000389048.3:c.1253A>G	p.Asp418Gly	p.D418G	ENST00000389048	NM_004304.4	418	gAc/gGc																																																																														
VHL	0	MSKCC	GRCh37	3	10183772	10183772	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	220	473	0	ENST00000256474.2:c.242del	p.Pro81ArgfsTer78	p.P81Rfs*78	ENST00000256474	NM_000551.3	81	Ccg/cg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52595952	52595953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	183	438	0	ENST00000394830.3:c.3962dup	p.Lys1322GlufsTer19	p.K1322Efs*19	ENST00000394830	NM_018313.4	1321	aag/aaAg																																																																														
E2F3	0	MSKCC	GRCh37	6	20402755	20402755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	130	247	0	ENST00000346618.3:c.292C>A	p.Leu98Ile	p.L98I	ENST00000346618	NM_001949.4	98	Ctc/Atc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0017071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	53	187	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	111	346	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0017071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	114	255	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ATM	0	MSKCC	GRCh37	11	108122614	108122614	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	51	381	0	ENST00000278616.4:c.1658G>T	p.Gly553Val	p.G553V	ENST00000278616	NM_000051.3	553	gGa/gTa																																																																														
ATM	0	MSKCC	GRCh37	11	108122637	108122637	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	65	385	0	ENST00000278616.4:c.1681C>T	p.Gln561Ter	p.Q561*	ENST00000278616	NM_000051.3	561	Caa/Taa																																																																														
SLX4	0	MSKCC	GRCh37	16	3647519	3647519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1397	139	511	2	ENST00000294008.3:c.1544G>C	p.Arg515Thr	p.R515T	ENST00000294008	NM_032444.2	515	aGa/aCa																																																																														
MSH2	0	MSKCC	GRCh37	2	47705622	47705622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	62	300	1	ENST00000233146.2:c.2422G>A	p.Glu808Lys	p.E808K	ENST00000233146	NM_000251.2	808	Gaa/Aaa																																																																														
ATRX	0	MSKCC	GRCh37	X	76778810	76778810	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	87	515	0	ENST00000373344.5:c.6769C>G	p.Leu2257Val	p.L2257V	ENST00000373344	NM_000489.3	2257	Ctt/Gtt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	190	491	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36231783	36231783	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	249	602	0	ENST00000300305.3:c.601del	p.Arg201GlufsTer10	p.R201Efs*10	ENST00000300305		201	Cga/ga																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161782	56161783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTACATCTAGTTCAGA			P-0017096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	144	440	0	ENST00000399503.3:c.1283_1284insATCTAGTTCAGACTAC	p.Glu432AspfsTer4	p.E432Dfs*4	ENST00000399503	NM_005921.1	427	tct/tCTACATCTAGTTCAGAct																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178382	56178382	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	128	272	1	ENST00000399503.3:c.3355A>T	p.Lys1119Ter	p.K1119*	ENST00000399503	NM_005921.1	1119	Aaa/Taa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2752	485	443	2	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	10	23	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	736	642	0	ENST00000269305.4:c.636delT	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453138	140453139	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	521	452	0	ENST00000288602.6:c.1794_1796dupTAC	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	aca/acTACa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692889	89692889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	1846	334	0	ENST00000371953.3:c.375delA	p.Ala126LeufsTer8	p.A126Lfs*8	ENST00000371953	NM_000314.4	125	Aaa/aa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67479763	67479763	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs140880290		P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	230	420	0	ENST00000327367.4:c.1070A>G	p.Asn357Ser	p.N357S	ENST00000327367	NM_005902.3	357	aAc/aGc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10246929	10246929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	247	427	2	ENST00000340748.4:c.4476C>G	p.Phe1492Leu	p.F1492L	ENST00000340748		1492	ttC/ttG																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	26	395	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0017098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	108	471	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	141	594	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																														
MGA	0	MSKCC	GRCh37	15	42005582	42005587	+	inframe_deletion	In_Frame_Del	DEL	AGATCC	AGATCC	-			P-0017098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	121	397	0	ENST00000219905.7:c.3320_3325del	p.Asp1107_Pro1108del	p.D1107_P1108del	ENST00000219905	NM_001164273.1	1106	cgAGATCCa/cga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	145	474	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68842326	68842326	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0017099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	133	487	1	ENST00000261769.5:c.388-1G>A		p.X130_splice	ENST00000261769	NM_004360.3	130																																																																															
NCOR1	0	MSKCC	GRCh37	17	15942871	15942890	+	frameshift_variant	Frame_Shift_Del	DEL	GTCATCAAAGCTTCCCATGA	GTCATCAAAGCTTCCCATGA	-			P-0017099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	68	575	2	ENST00000268712.3:c.6812_6831del	p.Leu2271GlnfsTer3	p.L2271Qfs*3	ENST00000268712	NM_006311.3	2271	cTCATGGGAAGCTTTGATGAC/c																																																																														
KMT2C	0	MSKCC	GRCh37	7	152055670	152055670	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0017099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	166	608	0	ENST00000262189.6:c.250+2T>C		p.X84_splice	ENST00000262189	NM_170606.2	84																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0017104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	69	516	1	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	57	489	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	577	629	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	149	388	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602413	10602413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	470	685	0	ENST00000171111.5:c.1165G>T	p.Asp389Tyr	p.D389Y	ENST00000171111	NM_203500.1	389	Gac/Tac																																																																														
ARID5B	0	MSKCC	GRCh37	10	63662105	63662105	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	204	414	0	ENST00000279873.7:c.209T>C	p.Leu70Ser	p.L70S	ENST00000279873	NM_032199.2	70	tTa/tCa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912153	114912153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	615	547	0	ENST00000543371.1:c.1223A>G	p.Gln408Arg	p.Q408R	ENST00000543371	NM_001198531.1	408	cAg/cGg																																																																														
ATM	0	MSKCC	GRCh37	11	108216611	108216612	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	149	286	1	ENST00000278616.4:c.8560_8561delinsTT	p.Arg2854Phe	p.R2854F	ENST00000278616	NM_000051.3	2854	CGc/TTc																																																																														
GLI1	0	MSKCC	GRCh37	12	57858938	57858939	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	522	642	1	ENST00000228682.2:c.434_435delinsAG	p.Pro145Gln	p.P145Q	ENST00000228682	NM_005269.2	145	cCC/cAG																																																																														
MSH6	0	MSKCC	GRCh37	2	48033466	48033466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	119	512	0	ENST00000234420.5:c.3770C>T	p.Ser1257Phe	p.S1257F	ENST00000234420	NM_000179.2	1257	tCt/tTt																																																																														
ETV1	0	MSKCC	GRCh37	7	13971127	13971127	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	111	154	0	ENST00000405192.2:c.802G>T	p.Gly268Cys	p.G268C	ENST00000405192	NM_001163147.1	268	Ggc/Tgc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513225	106513225	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	128	302	0	ENST00000359195.3:c.2129A>C	p.Gln710Pro	p.Q710P	ENST00000359195	NM_002649.2	710	cAg/cCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	80	600	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	131	294	1				ENST00000310581	NM_198253.2																																																																																
RBM10	0	MSKCC	GRCh37	X	47040629	47040629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	72	494	1	ENST00000329236.7:c.1030G>A	p.Glu344Lys	p.E344K	ENST00000329236	NM_001204466.1	344	Gag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112174086	112174086	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	64	389	0	ENST00000257430.4:c.2795C>G	p.Ser932Ter	p.S932*	ENST00000257430	NM_000038.5	932	tCa/tGa																																																																														
APC	0	MSKCC	GRCh37	5	112174764	112174764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	63	331	0	ENST00000257430.4:c.3473G>C	p.Arg1158Thr	p.R1158T	ENST00000257430	NM_000038.5	1158	aGa/aCa																																																																														
SHQ1	0	MSKCC	GRCh37	3	72890267	72890267	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	111	604	0	ENST00000325599.8:c.415G>C	p.Glu139Gln	p.E139Q	ENST00000325599	NM_018130.2	139	Gaa/Caa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164462	36164463	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	135	232	0	ENST00000300305.3:c.1412_1413del	p.Arg471ProfsTer128	p.R471Pfs*128	ENST00000300305		471	cGC/c																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045756	26045756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	35	167	0	ENST00000540144.1:c.118C>T	p.His40Tyr	p.H40Y	ENST00000540144	NM_003531.2	40	Cat/Tat																																																																														
PTEN	0	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	70	390	0	ENST00000371953.3:c.635-1G>C		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
ARID1A	0	MSKCC	GRCh37	1	27058045	27058045	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	86	457	1	ENST00000324856.7:c.1753C>T	p.Gln585Ter	p.Q585*	ENST00000324856	NM_006015.4	585	Cag/Tag																																																																														
NTRK1	0	MSKCC	GRCh37	1	156838389	156838389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1292	123	541	0	ENST00000524377.1:c.667G>C	p.Glu223Gln	p.E223Q	ENST00000524377	NM_002529.3	223	Gag/Cag																																																																														
RFWD2	0	MSKCC	GRCh37	1	176015393	176015393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	54	571	0	ENST00000367669.3:c.1345G>C	p.Glu449Gln	p.E449Q	ENST00000367669	NM_022457.5	449	Gaa/Caa																																																																														
IKBKE	0	MSKCC	GRCh37	1	206666440	206666440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	154	407	0	ENST00000367120.3:c.1920G>C	p.Glu640Asp	p.E640D	ENST00000367120	NM_014002.3	640	gaG/gaC																																																																														
AKT3	0	MSKCC	GRCh37	1	243809292	243809292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	53	510	0	ENST00000263826.5:c.332G>A	p.Arg111Lys	p.R111K	ENST00000263826	NM_005465.4	111	aGg/aAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89717681	89717681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	85	580	0	ENST00000371953.3:c.706G>C	p.Asp236His	p.D236H	ENST00000371953	NM_000314.4	236	Gac/Cac																																																																														
ATM	0	MSKCC	GRCh37	11	108121729	108121729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	100	551	0	ENST00000278616.4:c.1537C>T	p.Gln513Ter	p.Q513*	ENST00000278616	NM_000051.3	513	Cag/Tag																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50484278	50484278	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	121	602	0	ENST00000394963.4:c.1038C>G	p.Ile346Met	p.I346M	ENST00000394963	NM_003076.4	346	atC/atG																																																																														
FLT1	0	MSKCC	GRCh37	13	28896960	28896960	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	300	515	0	ENST00000282397.4:c.2920G>C	p.Asp974His	p.D974H	ENST00000282397	NM_002019.4	974	Gat/Cat																																																																														
IGF1R	0	MSKCC	GRCh37	15	99192836	99192836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	92	398	0	ENST00000268035.6:c.26C>T	p.Ser9Phe	p.S9F	ENST00000268035	NM_000875.3	9	tCc/tTc																																																																														
SLX4	0	MSKCC	GRCh37	16	3640901	3640901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1394	128	711	0	ENST00000294008.3:c.2738G>A	p.Arg913Lys	p.R913K	ENST00000294008	NM_032444.2	913	aGa/aAa																																																																														
NF1	0	MSKCC	GRCh37	17	29553503	29553503	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	238	502	0	ENST00000358273.4:c.2052G>C	p.Gln684His	p.Q684H	ENST00000358273	NM_001042492.2	684	caG/caC																																																																														
CDK12	0	MSKCC	GRCh37	17	37649026	37649026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	146	394	0	ENST00000447079.4:c.2131G>A	p.Glu711Lys	p.E711K	ENST00000447079	NM_015083.1	711	Gaa/Aaa																																																																														
CDK12	0	MSKCC	GRCh37	17	37649096	37649096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	212	547	0	ENST00000447079.4:c.2201G>C	p.Gly734Ala	p.G734A	ENST00000447079	NM_015083.1	734	gGa/gCa																																																																														
YES1	0	MSKCC	GRCh37	18	743014	743014	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	90	535	2	ENST00000314574.4:c.964C>T	p.Gln322Ter	p.Q322*	ENST00000314574	NM_005433.3	322	Cag/Tag																																																																														
MALT1	0	MSKCC	GRCh37	18	56415066	56415066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	75	333	0	ENST00000348428.3:c.2467G>A	p.Glu823Lys	p.E823K	ENST00000348428	NM_006785.3	823	Gaa/Aaa																																																																														
JAK3	0	MSKCC	GRCh37	19	17953247	17953247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	310	758	0	ENST00000458235.1:c.739C>T	p.Pro247Ser	p.P247S	ENST00000458235	NM_000215.3	247	Cca/Tca																																																																														
CIC	0	MSKCC	GRCh37	19	42794581	42794581	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1703	121	641	1	ENST00000575354.2:c.1661C>G	p.Ser554Ter	p.S554*	ENST00000575354	NM_015125.3	554	tCa/tGa																																																																														
IDH1	0	MSKCC	GRCh37	2	209116242	209116242	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	73	488	0	ENST00000345146.2:c.34G>C	p.Glu12Gln	p.E12Q	ENST00000345146	NM_005896.2	12	Gag/Cag																																																																														
TP63	0	MSKCC	GRCh37	3	189612290	189612290	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	58	303	0	ENST00000264731.3:c.2042G>C	p.Ter681SerextTer12	p.*681Sext*12	ENST00000264731	NM_003722.4	681	tGa/tCa																																																																														
PLK2	0	MSKCC	GRCh37	5	57751541	57751541	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	80	325	0	ENST00000274289.3:c.1450G>T	p.Glu484Ter	p.E484*	ENST00000274289	NM_006622.3	484	Gaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112175283	112175283	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	57	288	0	ENST00000257430.4:c.3992G>C	p.Arg1331Thr	p.R1331T	ENST00000257430	NM_000038.5	1331	aGa/aCa																																																																														
APC	0	MSKCC	GRCh37	5	112175471	112175471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	56	277	0	ENST00000257430.4:c.4180G>C	p.Asp1394His	p.D1394H	ENST00000257430	NM_000038.5	1394	Gat/Cat																																																																														
APC	0	MSKCC	GRCh37	5	112176351	112176351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	55	368	0	ENST00000257430.4:c.5060G>T	p.Arg1687Leu	p.R1687L	ENST00000257430	NM_000038.5	1687	cGa/cTa																																																																														
APC	0	MSKCC	GRCh37	5	112177589	112177589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	61	392	0	ENST00000257430.4:c.6298G>C	p.Asp2100His	p.D2100H	ENST00000257430	NM_000038.5	2100	Gat/Cat																																																																														
IRF4	0	MSKCC	GRCh37	6	394992	394992	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	86	434	0	ENST00000380956.4:c.388G>T	p.Glu130Ter	p.E130*	ENST00000380956	NM_001195286.1	130	Gag/Tag																																																																														
MDC1	0	MSKCC	GRCh37	6	30671882	30671882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	269	600	0	ENST00000376406.3:c.5078C>A	p.Pro1693Gln	p.P1693Q	ENST00000376406	NM_014641.2	1693	cCg/cAg																																																																														
CCND3	0	MSKCC	GRCh37	6	41903739	41903739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	72	412	1	ENST00000372991.4:c.818C>T	p.Ser273Phe	p.S273F	ENST00000372991	NM_001760.3	273	tCc/tTc																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553452	106553452	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	55	232	0	ENST00000369096.4:c.1417G>C	p.Asp473His	p.D473H	ENST00000369096	NM_001198.3	473	Gat/Cat																																																																														
XRCC2	0	MSKCC	GRCh37	7	152357809	152357809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	81	479	0	ENST00000359321.1:c.98C>A	p.Ala33Asp	p.A33D	ENST00000359321	NM_005431.1	33	gCt/gAt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44833924	44833924	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	146	414	0	ENST00000377967.4:c.348C>G	p.Tyr116Ter	p.Y116*	ENST00000377967	NM_021140.2	116	taC/taG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	136	847	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	76	752	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	268	1142	1	ENST00000269305.4:c.402T>A	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttA																																																																														
FH	0	MSKCC	GRCh37	1	241682991	241682991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	121	483	0	ENST00000366560.3:c.32C>G	p.Ser11Trp	p.S11W	ENST00000366560	NM_000143.3	11	tCg/tGg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8319899	8319899	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	117	570	1	ENST00000356435.5:c.5602G>T	p.Gly1868Ter	p.G1868*	ENST00000356435		1868	Gga/Tga																																																																														
ESR1	0	MSKCC	GRCh37	6	152163889	152163889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	98	577	0	ENST00000206249.3:c.610G>T	p.Gly204Cys	p.G204C	ENST00000206249	NM_000125.3	204	Ggc/Tgc																																																																														
SMYD3	0	MSKCC	GRCh37	1	246021942	246021942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	142	678	0	ENST00000388985.4:c.932C>T	p.Ala311Val	p.A311V	ENST00000388985		311	gCa/gTa																																																																														
MPL	0	MSKCC	GRCh37	1	43812574	43812574	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200454070		P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	74	768	0	ENST00000372470.3:c.1277G>A	p.Arg426Gln	p.R426Q	ENST00000372470	NM_005373.2	426	cGa/cAa																																																																														
NEGR1	0	MSKCC	GRCh37	1	72400977	72400977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	104	683	0	ENST00000357731.5:c.194G>A	p.Gly65Glu	p.G65E	ENST00000357731	NM_173808.2	65	gGa/gAa																																																																														
PARP1	0	MSKCC	GRCh37	1	226567311	226567312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	59	609	0	ENST00000366794.5:c.1574dup	p.Leu525PhefsTer4	p.L525Ffs*4	ENST00000366794	NM_001618.3	525	tta/ttTa																																																																														
RET	0	MSKCC	GRCh37	10	43609108	43609108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	128	893	0	ENST00000355710.3:c.1864C>A	p.Pro622Thr	p.P622T	ENST00000355710	NM_020975.4	622	Ccc/Acc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32945135	32945135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	168	669	1	ENST00000380152.3:c.8530G>A	p.Glu2844Lys	p.E2844K	ENST00000380152		2844	Gaa/Aaa																																																																														
RB1	0	MSKCC	GRCh37	13	49037949	49037950	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	118	621	0	ENST00000267163.4:c.2191_2192dup	p.Pro732PhefsTer13	p.P732Ffs*13	ENST00000267163	NM_000321.2	730	gat/gaTCt																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4117540	4117540	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	41	335	0	ENST00000262948.5:c.180G>C	p.Gln60His	p.Q60H	ENST00000262948	NM_030662.3	60	caG/caC																																																																														
DNMT1	0	MSKCC	GRCh37	19	10265318	10265318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	53	625	0	ENST00000340748.4:c.1728C>A	p.Phe576Leu	p.F576L	ENST00000340748		576	ttC/ttA																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276782	15276783	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	60	771	1	ENST00000263388.2:c.5482_5483delinsTT	p.Gly1828Leu	p.G1828L	ENST00000263388	NM_000435.2	1828	GGg/TTg																																																																														
JAK3	0	MSKCC	GRCh37	19	17955114	17955114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	181	857	0	ENST00000458235.1:c.113C>T	p.Pro38Leu	p.P38L	ENST00000458235	NM_000215.3	38	cCc/cTc																																																																														
CIC	0	MSKCC	GRCh37	19	42797304	42797304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	181	945	1	ENST00000575354.2:c.3666G>T	p.Glu1222Asp	p.E1222D	ENST00000575354	NM_015125.3	1222	gaG/gaT																																																																														
MSH2	0	MSKCC	GRCh37	2	47710004	47710004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	68	687	2	ENST00000233146.2:c.2721G>T	p.Lys907Asn	p.K907N	ENST00000233146	NM_000251.2	907	aaG/aaT																																																																														
FAM175A	0	MSKCC	GRCh37	4	84390263	84390263	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	67	728	1	ENST00000321945.7:c.518T>A	p.Met173Lys	p.M173K	ENST00000321945	NM_139076.2	173	aTg/aAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	115	597	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	82	869	0	ENST00000335508.6:c.1998G>C	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaC																																																																														
GATA3	0	MSKCC	GRCh37	10	8100469	8100469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	73	1032	2	ENST00000346208.3:c.443C>T	p.Pro148Leu	p.P148L	ENST00000346208		148	cCg/cTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023632	27023633	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCA			P-0017120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	37	594	1	ENST00000324856.7:c.741_742insAGCC	p.Gly248SerfsTer153	p.G248Sfs*153	ENST00000324856	NM_006015.4	246	-/GCCA																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446999	49446999	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	48	531	0	ENST00000301067.7:c.945del	p.Trp315Ter	p.W315*	ENST00000301067	NM_003482.3	315	tgG/tg																																																																														
JAK3	0	MSKCC	GRCh37	19	17951089	17951089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	69	891	1	ENST00000458235.1:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000458235	NM_000215.3	402	Cgc/Tgc																																																																														
RASA1	0	MSKCC	GRCh37	5	86686618	86686618	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0017120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	35	606	0	ENST00000274376.6:c.3062A>C	p.His1021Pro	p.H1021P	ENST00000274376	NM_002890.2	1021	cAc/cCc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			313	26	751	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			212	24	899	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	26	697	1	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	16	547	0	ENST00000361570.3:c.436C>T	p.Pro146Ser	p.P146S	ENST00000361570	NM_058195.3	146	Cct/Tct																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	16	547	0	ENST00000361570.3:c.436C>T	p.Pro146Ser	p.P146S	ENST00000361570	NM_058195.3	146	Cct/Tct																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971095	21971099	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCG	TCCCG	-			P-0017121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			203	13	532	0	ENST00000304494.5:c.259_263del	p.Arg87GlyfsTer31	p.R87Gfs*31	ENST00000304494	NM_000077.4	87	CGGGAg/g																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971095	21971099	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCG	TCCCG	-			P-0017121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			203	13	532	0	ENST00000304494.5:c.259_263del	p.Arg87GlyfsTer31	p.R87Gfs*31	ENST00000304494	NM_000077.4	87	CGGGAg/g																																																																														
CREBBP	0	MSKCC	GRCh37	16	3860693	3860693	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017121-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	25	763	1	ENST00000262367.5:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000262367	NM_004380.2	296	Cag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0017122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	37	306	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0017122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	113	568	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89692910	89692910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	227	637	0	ENST00000371953.3:c.394G>A	p.Gly132Ser	p.G132S	ENST00000371953	NM_000314.4	132	Ggt/Agt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0017122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	64	503	0	ENST00000274335.5:c.1392_1403delTAGATTATATGA	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56180627	56180661	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAATCTCTTCATTGAATGGATGGCAGGTATGTTA	ACAATCTCTTCATTGAATGGATGGCAGGTATGTTA	TAAAACATTAACAT			P-0017122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	36	492	3	ENST00000399503.3:c.3956_3982+8delinsTAAAACATTAACAT		p.X1319_splice	ENST00000399503	NM_005921.1	1319																																																																															
SH2B3	0	MSKCC	GRCh37	12	111885616	111885616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	648	1035	0	ENST00000341259.2:c.1393G>A	p.Val465Ile	p.V465I	ENST00000341259	NM_005475.2	465	Gtc/Atc																																																																														
HGF	0	MSKCC	GRCh37	7	81331973	81331973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	185	743	0	ENST00000222390.5:c.2111G>T	p.Gly704Val	p.G704V	ENST00000222390	NM_000601.4	704	gGt/gTt																																																																														
SMO	0	MSKCC	GRCh37	7	128829116	128829116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	66	41	0	ENST00000249373.3:c.124C>T	p.Arg42Trp	p.R42W	ENST00000249373	NM_005631.4	42	Cgg/Tgg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859384	151859397	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGACTCTGTGCT	GAGGACTCTGTGCT	-			P-0017123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	184	650	0	ENST00000262189.6:c.11265_11278del	p.Ala3756ProfsTer15	p.A3756Pfs*15	ENST00000262189	NM_170606.2	3755	tcAGCACAGAGTCCTCcc/tccc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	62	439	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0017124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	31	351	1	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444505	49444505	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	64	730	1	ENST00000301067.7:c.2866G>T	p.Glu956Ter	p.E956*	ENST00000301067	NM_003482.3	956	Gag/Tag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916920	178916925	+	inframe_deletion	In_Frame_Del	DEL	GAACCA	GAACCA	-			P-0017124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	44	874	0	ENST00000263967.3:c.308_313delAACCAG	p.Glu103_Pro104del	p.E103_P104del	ENST00000263967	NM_006218.2	103	GAACCA/-																																																																														
SOX17	0	MSKCC	GRCh37	8	55372526	55372527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	93	1214	0	ENST00000297316.4:c.1217dup	p.Tyr407IlefsTer7	p.Y407Ifs*7	ENST00000297316	NM_022454.3	406	gta/gTta																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	130	590	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	25	146	0				ENST00000310581	NM_198253.2																																																																																
KDM6A	0	MSKCC	GRCh37	X	44950066	44950066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	120	593	1	ENST00000377967.4:c.3835C>T	p.Arg1279Ter	p.R1279*	ENST00000377967	NM_021140.2	1279	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577152	7577154	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACC	ACC	-			P-0017154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	100	569	0	ENST00000269305.4:c.784_786delGGT	p.Gly262del	p.G262del	ENST00000269305	NM_001126112.2	262	GGT/-																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416459	49416459	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	61	508	0	ENST00000301067.7:c.16252G>C	p.Glu5418Gln	p.E5418Q	ENST00000301067	NM_003482.3	5418	Gaa/Caa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41246018	41246018	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	143	641	0	ENST00000357654.3:c.1530delA	p.Gly511AlafsTer21	p.G511Afs*21	ENST00000357654	NM_007294.3	510	tcA/tc																																																																														
TP63	0	MSKCC	GRCh37	3	189612002	189612002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	89	366	0	ENST00000264731.3:c.1754C>T	p.Ala585Val	p.A585V	ENST00000264731	NM_003722.4	585	gCa/gTa																																																																														
CCND3	0	MSKCC	GRCh37	6	41908296	41908296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	62	629	0	ENST00000372991.4:c.226G>C	p.Glu76Gln	p.E76Q	ENST00000372991	NM_001760.3	76	Gaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	83	616	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MAX	0	MSKCC	GRCh37	14	65560494	65560494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	62	441	0	ENST00000358664.4:c.103C>T	p.Arg35Cys	p.R35C	ENST00000358664	NM_002382.4	35	Cgt/Tgt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462923	120462923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	31	361	0	ENST00000256646.2:c.5408C>T	p.Pro1803Leu	p.P1803L	ENST00000256646	NM_024408.3	1803	cCa/cTa																																																																														
PALB2	0	MSKCC	GRCh37	16	23646588	23646588	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	69	442	0	ENST00000261584.4:c.1279del	p.Ala427LeufsTer25	p.A427Lfs*25	ENST00000261584	NM_024675.3	427	Gct/ct																																																																														
APC	0	MSKCC	GRCh37	5	112179128	112179128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	48	404	0	ENST00000257430.4:c.7837A>G	p.Arg2613Gly	p.R2613G	ENST00000257430	NM_000038.5	2613	Aga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	83	610	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881440	37881440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	88	550	0	ENST00000269571.5:c.2632C>T	p.His878Tyr	p.H878Y	ENST00000269571		878	Cat/Tat																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171607	36171607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	82	217	0	ENST00000300305.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000300305		320	Cga/Tga																																																																														
CDH1	0	MSKCC	GRCh37	16	68857530	68857531	+	splice_donor_variant	Splice_Site	DEL	GT	GT	-			P-0017156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	69	377	0	ENST00000261769.5:c.2164+1_2164+2del		p.X722_splice	ENST00000261769	NM_004360.3	722																																																																															
STAT3	0	MSKCC	GRCh37	17	40475137	40475137	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	90	492	0	ENST00000264657.5:c.1773G>C	p.Lys591Asn	p.K591N	ENST00000264657	NM_139276.2	591	aaG/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	108	702	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PMS1	0	MSKCC	GRCh37	2	190728701	190728701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	53	554	0	ENST00000441310.2:c.2089G>T	p.Val697Leu	p.V697L	ENST00000441310	NM_000534.4	697	Gta/Tta																																																																														
BAP1	0	MSKCC	GRCh37	3	52436662	52436662	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	61	688	0	ENST00000460680.1:c.2012A>G	p.Tyr671Cys	p.Y671C	ENST00000460680	NM_004656.3	671	tAc/tGc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44941820	44941820	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0017157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	58	240	2	ENST00000377967.4:c.3145-1G>T		p.X1049_splice	ENST00000377967	NM_021140.2	1049																																																																															
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	132	708	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	416	742	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	163	599	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602255	10602255	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	33	546	1	ENST00000171111.5:c.1323G>T	p.Glu441Asp	p.E441D	ENST00000171111	NM_203500.1	441	gaG/gaT																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468065	50468065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	140	378	0	ENST00000331340.3:c.1300G>A	p.Ala434Thr	p.A434T	ENST00000331340	NM_006060.4	434	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	364	1307	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101273	27101273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	302	926	0	ENST00000324856.7:c.4555C>T	p.Gln1519Ter	p.Q1519*	ENST00000324856	NM_006015.4	1519	Cag/Tag																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986899	36986899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	188	626	1	ENST00000354822.5:c.790G>A	p.Gly264Ser	p.G264S	ENST00000354822	NM_001079668.2	264	Ggc/Agc																																																																														
AXL	0	MSKCC	GRCh37	19	41736908	41736908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	211	1232	0	ENST00000301178.4:c.623A>G	p.His208Arg	p.H208R	ENST00000301178	NM_021913.4	208	cAt/cGt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31515615	31515615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	168	1006	0	ENST00000344624.3:c.1004G>A	p.Gly335Glu	p.G335E	ENST00000344624		335	gGg/gAg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956691	93956691	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	75	616	0	ENST00000369303.4:c.2545A>T	p.Ile849Leu	p.I849L	ENST00000369303	NM_004440.3	849	Ata/Tta																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120240	94120240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	72	453	0	ENST00000369303.4:c.811C>G	p.Gln271Glu	p.Q271E	ENST00000369303	NM_004440.3	271	Caa/Gaa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32937620	32937621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	253	819	0	ENST00000380152.3:c.8282dup	p.Pro2762SerfsTer2	p.P2762Sfs*2	ENST00000380152		2761	tct/tCct																																																																														
BRD4	0	MSKCC	GRCh37	19	15355347	15355347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	115	359	0	ENST00000263377.2:c.2276C>T	p.Pro759Leu	p.P759L	ENST00000263377	NM_058243.2	759	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0017170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	416	989	2	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15974800	15974800	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	255	665	0	ENST00000268712.3:c.4075A>C	p.Ile1359Leu	p.I1359L	ENST00000268712	NM_006311.3	1359	Att/Ctt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212264	36212264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	101	892	0	ENST00000222270.7:c.2015G>A	p.Gly672Glu	p.G672E	ENST00000222270	NM_014727.1	672	gGg/gAg																																																																														
APC	0	MSKCC	GRCh37	5	112175158	112175159	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	145	367	0	ENST00000257430.4:c.3869dup	p.Asn1290LysfsTer11	p.N1290Kfs*11	ENST00000257430	NM_000038.5	1289	-/A																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061178	38061195	+	inframe_deletion	In_Frame_Del	DEL	GCTTCTCGCACTTGAAGC	GCTTCTCGCACTTGAAGC	-			P-0017172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	44	343	1	ENST00000250448.2:c.794_811delGCTTCAAGTGCGAGAAGC	p.Arg265_Lys270del	p.R265_K270del	ENST00000250448	NM_004496.3	265	cGCTTCAAGTGCGAGAAGCag/cag																																																																														
CDH1	0	MSKCC	GRCh37	16	68835758	68835794	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AATACAGTGGGGCACCACCACCGCCCCCCGCCCCATC	AATACAGTGGGGCACCACCACCGCCCCCCGCCCCATC	-			P-0017172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	102	820	0	ENST00000261769.5:c.350_386del	p.Asn117ArgfsTer86	p.N117Rfs*86	ENST00000261769	NM_004360.3	117	AATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCag/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	500	955	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944946	31944946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	81	538	2	ENST00000340398.3:c.155G>A	p.Arg52His	p.R52H	ENST00000340398	NM_001013699.2	52	cGt/cAt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344471	118344471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	136	389	0	ENST00000534358.1:c.2597A>G	p.Lys866Arg	p.K866R	ENST00000534358	NM_005933.3	866	aAg/aGg																																																																														
MGA	0	MSKCC	GRCh37	15	42028674	42028674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	68	733	0	ENST00000219905.7:c.4212C>A	p.Asp1404Glu	p.D1404E	ENST00000219905	NM_001164273.1	1404	gaC/gaA																																																																														
BRCA1	0	MSKCC	GRCh37	17	41228554	41228554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	151	1080	1	ENST00000357654.3:c.4435G>A	p.Val1479Met	p.V1479M	ENST00000357654	NM_007294.3	1479	Gtg/Atg																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	340	1134	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	135	476	1				ENST00000310581	NM_198253.2																																																																																
BRAF	0	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	526	803	0	ENST00000288602.6:c.1790T>A	p.Leu597Gln	p.L597Q	ENST00000288602	NM_004333.4	597	cTa/cAa																																																																														
FAT1	0	MSKCC	GRCh37	4	187522449	187522449	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	170	660	0	ENST00000441802.2:c.11614C>T	p.Arg3872Ter	p.R3872*	ENST00000441802	NM_005245.3	3872	Cga/Tga																																																																														
RIT1	0	MSKCC	GRCh37	1	155874197	155874197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	257	845	0	ENST00000368323.3:c.334C>T	p.Arg112Cys	p.R112C	ENST00000368323	NM_006912.5	112	Cgt/Tgt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198273267	198273267	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	221	630	1	ENST00000335508.6:c.943C>T	p.Arg315Ter	p.R315*	ENST00000335508	NM_012433.2	315	Cga/Tga																																																																														
DDR2	0	MSKCC	GRCh37	1	162740225	162740225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	182	692	0	ENST00000367921.3:c.1427C>T	p.Pro476Leu	p.P476L	ENST00000367921	NM_006182.2	476	cCc/cTc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376107	118376107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	193	603	1	ENST00000534358.1:c.9500C>T	p.Ser3167Phe	p.S3167F	ENST00000534358	NM_005933.3	3167	tCc/tTc																																																																														
KDM5A	0	MSKCC	GRCh37	12	432248	432248	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	182	683	0	ENST00000399788.2:c.2275G>A	p.Asp759Asn	p.D759N	ENST00000399788	NM_001042603.1	759	Gat/Aat																																																																														
GLI1	0	MSKCC	GRCh37	12	57864099	57864099	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	893	464	0	ENST00000228682.2:c.1577-1G>A		p.X526_splice	ENST00000228682	NM_005269.2	526																																																																															
AXL	0	MSKCC	GRCh37	19	41727805	41727805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	212	933	0	ENST00000301178.4:c.430G>A	p.Glu144Lys	p.E144K	ENST00000301178	NM_021913.4	144	Gag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32190368	32190368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	197	781	0	ENST00000375023.3:c.371C>T	p.Pro124Leu	p.P124L	ENST00000375023	NM_004557.3	124	cCc/cTc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157505402	157505402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	174	662	0	ENST00000346085.5:c.3383A>G	p.Asn1128Ser	p.N1128S	ENST00000346085	NM_020732.3	1128	aAc/aGc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106524631	106524631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	283	360	1	ENST00000359195.3:c.2792C>T	p.Ser931Phe	p.S931F	ENST00000359195	NM_002649.2	931	tCc/tTc																																																																														
MET	0	MSKCC	GRCh37	7	116435988	116435988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	522	826	1	ENST00000397752.3:c.3983C>T	p.Pro1328Leu	p.P1328L	ENST00000397752	NM_000245.2	1328	cCa/cTa																																																																														
PREX2	0	MSKCC	GRCh37	8	68942842	68942842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	218	813	1	ENST00000288368.4:c.654G>A	p.Met218Ile	p.M218I	ENST00000288368	NM_024870.2	218	atG/atA																																																																														
PREX2	0	MSKCC	GRCh37	8	68968149	68968149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	250	987	0	ENST00000288368.4:c.1178G>A	p.Gly393Glu	p.G393E	ENST00000288368	NM_024870.2	393	gGa/gAa																																																																														
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	237	736	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	193	558	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0017184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	116	589	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
RBM10	0	MSKCC	GRCh37	X	47044719	47044719	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	131	699	0	ENST00000329236.7:c.1885C>T	p.Gln629Ter	p.Q629*	ENST00000329236	NM_001204466.1	629	Cag/Tag																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737780	145737780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	79	527	0	ENST00000428558.2:c.3050G>C	p.Arg1017Thr	p.R1017T	ENST00000428558	NM_004260.3	1017	aGg/aCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	419	553	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	383	483	0	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
INPPL1	0	MSKCC	GRCh37	11	71943329	71943329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	554	754	0	ENST00000298229.2:c.1661C>T	p.Ser554Leu	p.S554L	ENST00000298229	NM_001567.3	554	tCa/tTa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481842	56481842	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	263	737	0	ENST00000267101.3:c.770C>G	p.Pro257Arg	p.P257R	ENST00000267101	NM_001982.3	257	cCt/cGt																																																																														
POLE	0	MSKCC	GRCh37	12	133236077	133236077	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	308	522	0	ENST00000320574.5:c.3079T>G	p.Ser1027Ala	p.S1027A	ENST00000320574	NM_006231.2	1027	Tct/Gct																																																																														
CXCR4	0	MSKCC	GRCh37	2	136872909	136872909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	206	429	0	ENST00000241393.3:c.589G>T	p.Val197Phe	p.V197F	ENST00000241393	NM_003467.2	197	Gtt/Ttt																																																																														
VHL	0	MSKCC	GRCh37	3	10191506	10191506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	71	503	0	ENST00000256474.2:c.499C>G	p.Arg167Gly	p.R167G	ENST00000256474	NM_000551.3	167	Cgg/Ggg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	352	483	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	506	527	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176118142	176118143	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	134	401	1	ENST00000367669.3:c.830_831del	p.Glu277AlafsTer17	p.E277Afs*17	ENST00000367669	NM_022457.5	277	gAG/g																																																																														
PTEN	0	MSKCC	GRCh37	10	89653785	89653785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	251	416	2	ENST00000371953.3:c.83T>C	p.Ile28Thr	p.I28T	ENST00000371953	NM_000314.4	28	aTt/aCt																																																																														
NF1	0	MSKCC	GRCh37	17	29676271	29676271	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	165	541	0	ENST00000358273.4:c.7321+2T>C		p.X2441_splice	ENST00000358273	NM_001042492.2	2441																																																																															
FGFR4	0	MSKCC	GRCh37	5	176522635	176522636	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	387	692	0	ENST00000292408.4:c.1734dup	p.Ser579GlufsTer3	p.S579Efs*3	ENST00000292408	NM_213647.1	578	cgg/cGgg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967893	93967893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	569	728	1	ENST00000369303.4:c.2034C>A	p.Asp678Glu	p.D678E	ENST00000369303	NM_004440.3	678	gaC/gaA																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	143	652	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
RAD51D	0	MSKCC	GRCh37	17	33428249	33428249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	73	412	0	ENST00000335858.7:c.538A>G	p.Met180Val	p.M180V	ENST00000335858	NM_133629.2	180	Atg/Gtg																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121097	29121097	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	139	662	0	ENST00000328354.6:c.460A>G	p.Asn154Asp	p.N154D	ENST00000328354	NM_007194.3	154	Aac/Gac																																																																														
TERT	0	MSKCC	GRCh37	5	1293448	1293448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	125	611	0	ENST00000310581.5:c.1553C>T	p.Ala518Val	p.A518V	ENST00000310581	NM_198253.2	518	gCt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	122	755	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	131	670	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906754	32906754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	104	857	0	ENST00000380152.3:c.1139G>C	p.Ser380Thr	p.S380T	ENST00000380152		380	aGt/aCt																																																																														
RNF43	0	MSKCC	GRCh37	17	56440614	56440652	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTGGAGGTCTAGTGTGCTTACCCAGGCCGGGGGCTCCT	TCTGGAGGTCTAGTGTGCTTACCCAGGCCGGGGGCTCCT	-			P-0017189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	79	479	0	ENST00000407977.2:c.566_582+22del		p.X189_splice	ENST00000407977		189																																																																															
AXIN2	0	MSKCC	GRCh37	17	63533656	63533687	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGGGGGCAGGCGCCCGGCGAGGCGGCCGCG	GGAGGGGGCAGGCGCCCGGCGAGGCGGCCGCG	-			P-0017189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	100	457	0	ENST00000307078.5:c.1467_1498del	p.Ala490ArgfsTer127	p.A490Rfs*127	ENST00000307078	NM_004655.3	489	ccCGCGGCCGCCTCGCCGGGCGCCTGCCCCCTCCtc/cctc																																																																														
MED12	0	MSKCC	GRCh37	X	70355033	70355059	+	inframe_deletion	In_Frame_Del	DEL	AGCCACAGGGCTCCCTTATCGATACCA	AGCCACAGGGCTCCCTTATCGATACCA	-			P-0017189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	72	859	0	ENST00000374080.3:c.4957_4983del	p.Pro1653_Lys1661del	p.P1653_K1661del	ENST00000374080		1652	gAGCCACAGGGCTCCCTTATCGATACCAag/gag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	100	488	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	46	357	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ARID2	0	MSKCC	GRCh37	12	46245391	46245391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	73	370	0	ENST00000334344.6:c.3485C>A	p.Thr1162Asn	p.T1162N	ENST00000334344	NM_152641.2	1162	aCc/aAc																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643695	38643695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	52	433	1	ENST00000299084.4:c.1165G>A	p.Asp389Asn	p.D389N	ENST00000299084	NM_152594.2	389	Gat/Aat																																																																														
KIT	0	MSKCC	GRCh37	4	55561868	55561868	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	32	329	0	ENST00000288135.5:c.258G>C	p.Lys86Asn	p.K86N	ENST00000288135	NM_000222.2	86	aaG/aaC																																																																														
NSD1	0	MSKCC	GRCh37	5	176636924	176636924	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	68	480	2	ENST00000439151.2:c.1524G>T	p.Arg508Ser	p.R508S	ENST00000439151	NM_022455.4	508	agG/agT																																																																														
IKZF1	0	MSKCC	GRCh37	7	50444326	50444326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	28	241	0	ENST00000331340.3:c.256G>C	p.Asp86His	p.D86H	ENST00000331340	NM_006060.4	86	Gat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	243	938	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0017191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	30	201	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0017191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	30	201	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7578437	7578447	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTGTAGATG	GCTTGTAGATG	-			P-0017191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	134	930	0	ENST00000269305.4:c.483_493del	p.Ile162ValfsTer15	p.I162Vfs*15	ENST00000269305	NM_001126112.2	161	gcCATCTACAAGCag/gcag																																																																														
RARA	0	MSKCC	GRCh37	17	38506095	38506100	+	inframe_deletion	In_Frame_Del	DEL	CTGCAT	CTGCAT	-			P-0017191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	119	940	0	ENST00000254066.5:c.388_393del	p.Cys130_Ile131del	p.C130_I131del	ENST00000254066	NM_000964.3	129	aaCTGCATc/aac																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575107	48575107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	38	682	0	ENST00000342988.3:c.301T>C	p.Trp101Arg	p.W101R	ENST00000342988	NM_005359.5	101	Tgg/Cgg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306544	41306544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	93	733	0	ENST00000373198.4:c.1115C>T	p.Pro372Leu	p.P372L	ENST00000373198	NM_133170.3	372	cCg/cTg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12011138	12011138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	43	499	0	ENST00000353533.5:c.545C>G	p.Ser182Cys	p.S182C	ENST00000353533	NM_003010.3	182	tCt/tGt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188803	32188803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	121	651	0	ENST00000375023.3:c.751C>A	p.Leu251Met	p.L251M	ENST00000375023	NM_004557.3	251	Ctg/Atg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	216	791	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47045872	47045872	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0017196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	160	388	0	ENST00000329236.7:c.2434-1G>T		p.X812_splice	ENST00000329236	NM_001204466.1	812																																																																															
SMAD4	0	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	67	558	0	ENST00000342988.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000342988	NM_005359.5	352	gGa/gTa																																																																														
ALK	0	MSKCC	GRCh37	2	29448339	29448339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	154	1236	2	ENST00000389048.3:c.3160G>A	p.Gly1054Ser	p.G1054S	ENST00000389048	NM_004304.4	1054	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	263	706	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	287	802	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27058057	27058057	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	72	474	0	ENST00000324856.7:c.1765C>T	p.Gln589Ter	p.Q589*	ENST00000324856	NM_006015.4	589	Caa/Taa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445499	49445499	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	260	658	1	ENST00000301067.7:c.1967delT	p.Leu656ArgfsTer274	p.L656Rfs*274	ENST00000301067	NM_003482.3	656	cTg/cg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581273	48581273	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	302	721	0	ENST00000342988.3:c.577G>T	p.Glu193Ter	p.E193*	ENST00000342988	NM_005359.5	193	Gag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	818	815	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577526	7577526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	173	746	0	ENST00000269305.4:c.755T>C	p.Leu252Pro	p.L252P	ENST00000269305	NM_001126112.2	252	cTc/cCc																																																																														
RBM10	0	MSKCC	GRCh37	X	47044898	47044898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	123	1100	2	ENST00000329236.7:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000329236	NM_001204466.1	664	Cag/Tag																																																																														
MTOR	0	MSKCC	GRCh37	1	11186697	11186697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	88	633	0	ENST00000361445.4:c.6508del	p.Arg2170GlyfsTer3	p.R2170Gfs*3	ENST00000361445	NM_004958.3	2170	Cgg/gg																																																																														
TERT	0	MSKCC	GRCh37	5	1254582	1254582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	173	776	4	ENST00000310581.5:c.3196C>T	p.Pro1066Ser	p.P1066S	ENST00000310581	NM_198253.2	1066	Ccc/Tcc																																																																														
XIAP	0	MSKCC	GRCh37	X	123022474	123022474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	41	915	0	ENST00000355640.3:c.883G>T	p.Gly295Cys	p.G295C	ENST00000355640		295	Ggt/Tgt																																																																														
PARP1	0	MSKCC	GRCh37	1	226589590	226590017	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCTGTGTGGTGGGAGGGGGAGGGGGTACTGGAAACTCTTTGTTCTTTGCTTACTTTTGCCATGAACAAAAATAAAGTATATTAAAAACAAAACAACTTTAAAGGCTACATTCCAAGCACCTGGAAAAACAAAATACCAAATATCATGCAACAGATGATGCTGAGTCCAGGAGGTGTTGCTGAAATAACATGGGCACCATACGCTTGATCTGCACATGTGGGAGAGGGCAAGCTGGGGGAGGTTTGCTTTGCTCTCTGAGACGAGGCCCTCCTGGGAGCTTCAGGGTGGGGGCTGAATGCCCATGCTGCCCCAGTATGTACACACCTGTCACTCCTCCAGCTTCCGCTGTCTTCTTGACTTTCTGCTGGTCATCCCACCGAAGCTCAGAGAACCCATCCACCTCAACGTCAGGGTGCCGGATGGAGTG	GCCTGTGTGGTGGGAGGGGGAGGGGGTACTGGAAACTCTTTGTTCTTTGCTTACTTTTGCCATGAACAAAAATAAAGTATATTAAAAACAAAACAACTTTAAAGGCTACATTCCAAGCACCTGGAAAAACAAAATACCAAATATCATGCAACAGATGATGCTGAGTCCAGGAGGTGTTGCTGAAATAACATGGGCACCATACGCTTGATCTGCACATGTGGGAGAGGGCAAGCTGGGGGAGGTTTGCTTTGCTCTCTGAGACGAGGCCCTCCTGGGAGCTTCAGGGTGGGGGCTGAATGCCCATGCTGCCCCAGTATGTACACACCTGTCACTCCTCCAGCTTCCGCTGTCTTCTTGACTTTCTGCTGGTCATCCCACCGAAGCTCAGAGAACCCATCCACCTCAACGTCAGGGTGCCGGATGGAGTG	-			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	74	2	0	ENST00000366794.5:c.184_286+325del		p.X62_splice	ENST00000366794	NM_001618.3	62																																																																															
BIRC3	0	MSKCC	GRCh37	11	102206732	102206732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	158	635	0	ENST00000263464.3:c.1360C>A	p.Leu454Ile	p.L454I	ENST00000263464	NM_001165.4	454	Ctt/Att																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910617	32910617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	174	752	0	ENST00000380152.3:c.2125C>G	p.Leu709Val	p.L709V	ENST00000380152		709	Ctg/Gtg																																																																														
TSHR	0	MSKCC	GRCh37	14	81610393	81610393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	148	610	0	ENST00000298171.2:c.1991T>C	p.Val664Ala	p.V664A	ENST00000298171	NM_000369.2	664	gTa/gCa																																																																														
TSHR	0	MSKCC	GRCh37	14	81610402	81610402	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	146	605	0	ENST00000298171.2:c.2000A>C	p.Tyr667Ser	p.Y667S	ENST00000298171	NM_000369.2	667	tAt/tCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	277	597	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93955034	93955034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	167	361	0	ENST00000369303.4:c.2864T>A	p.Val955Glu	p.V955E	ENST00000369303	NM_004440.3	955	gTa/gAa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911801	32911803	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0017203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	227	864	0	ENST00000380152.3:c.3310_3312del	p.Thr1104del	p.T1104del	ENST00000380152		1103	ttAACa/tta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	138	304	0				ENST00000310581	NM_198253.2																																																																																
NF1	0	MSKCC	GRCh37	17	29509639	29509639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	531	433	0	ENST00000358273.4:c.844C>T	p.Gln282Ter	p.Q282*	ENST00000358273	NM_001042492.2	282	Cag/Tag																																																																														
RB1	0	MSKCC	GRCh37	13	48939108	48939108	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	143	213	0	ENST00000267163.4:c.939+1G>A		p.X313_splice	ENST00000267163	NM_000321.2	313																																																																															
NOTCH2	0	MSKCC	GRCh37	1	120458876	120458876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	396	479	0	ENST00000256646.2:c.6469C>T	p.Pro2157Ser	p.P2157S	ENST00000256646	NM_024408.3	2157	Cct/Tct																																																																														
ATM	0	MSKCC	GRCh37	11	108180961	108180961	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	380	294	0	ENST00000278616.4:c.5837A>C	p.Gln1946Pro	p.Q1946P	ENST00000278616	NM_000051.3	1946	cAg/cCg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934512	9934512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	639	655	0	ENST00000330684.3:c.1643C>T	p.Ala548Val	p.A548V	ENST00000330684	NM_001134407.1	548	gCt/gTt																																																																														
NUP93	0	MSKCC	GRCh37	16	56855458	56855458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	519	698	0	ENST00000308159.5:c.607C>T	p.Pro203Ser	p.P203S	ENST00000308159	NM_014669.4	203	Cct/Tct																																																																														
NCOR1	0	MSKCC	GRCh37	17	15971312	15971312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	176	414	0	ENST00000268712.3:c.4637C>T	p.Pro1546Leu	p.P1546L	ENST00000268712	NM_006311.3	1546	cCg/cTg																																																																														
FLCN	0	MSKCC	GRCh37	17	17127294	17127294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	163	432	0	ENST00000285071.4:c.560C>T	p.Pro187Leu	p.P187L	ENST00000285071	NM_144997.5	187	cCc/cTc																																																																														
NF1	0	MSKCC	GRCh37	17	29585486	29585486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	174	267	0	ENST00000358273.4:c.4298C>T	p.Pro1433Leu	p.P1433L	ENST00000358273	NM_001042492.2	1433	cCt/cTt																																																																														
NF1	0	MSKCC	GRCh37	17	29587499	29587499	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	414	460	0	ENST00000358273.4:c.4543C>T	p.Gln1515Ter	p.Q1515*	ENST00000358273	NM_001042492.2	1515	Cag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29653002	29653002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	589	638	0	ENST00000358273.4:c.5000C>T	p.Pro1667Leu	p.P1667L	ENST00000358273	NM_001042492.2	1667	cCt/cTt																																																																														
STAT5A	0	MSKCC	GRCh37	17	40459445	40459445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	1238	1227	0	ENST00000345506.4:c.1706C>T	p.Thr569Ile	p.T569I	ENST00000345506	NM_003152.3	569	aCc/aTc																																																																														
POLD1	0	MSKCC	GRCh37	19	50918195	50918195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	542	1175	0	ENST00000440232.2:c.2512C>T	p.Pro838Ser	p.P838S	ENST00000440232	NM_002691.3	838	Ccc/Tcc																																																																														
PAK7	0	MSKCC	GRCh37	20	9523232	9523232	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	447	561	0	ENST00000353224.5:c.2004+1G>A		p.X668_splice	ENST00000353224	NM_177990.2	668																																																																															
MAP3K13	0	MSKCC	GRCh37	3	185191278	185191278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	283	321	0	ENST00000265026.3:c.2159C>T	p.Pro720Leu	p.P720L	ENST00000265026	NM_004721.4	720	cCc/cTc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38982109	38982109	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	208	435	0	ENST00000357387.3:c.613C>T	p.Arg205Ter	p.R205*	ENST00000357387	NM_152756.3	205	Cga/Tga																																																																														
MDC1	0	MSKCC	GRCh37	6	30668285	30668285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1295	276	595	0	ENST00000376406.3:c.6227C>T	p.Pro2076Leu	p.P2076L	ENST00000376406	NM_014641.2	2076	cCa/cTa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32166472	32166472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	304	809	0	ENST00000375023.3:c.4571G>A	p.Gly1524Glu	p.G1524E	ENST00000375023	NM_004557.3	1524	gGa/gAa																																																																														
TSC1	0	MSKCC	GRCh37	9	135787845	135787845	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	148	331	0	ENST00000298552.3:c.738-1G>A		p.X246_splice	ENST00000298552	NM_001162426.1	246																																																																															
KDM6A	0	MSKCC	GRCh37	X	44732855	44732855	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			18	389	263	0	ENST00000377967.4:c.58G>A	p.Asp20Asn	p.D20N	ENST00000377967	NM_021140.2	20	Gat/Aat																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934654	9934654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	107	425	0	ENST00000330684.3:c.1501G>A	p.Val501Ile	p.V501I	ENST00000330684	NM_001134407.1	501	Gtc/Atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	640	686	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	426	740	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610208	10610208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	511	734	0	ENST00000171111.5:c.502G>T	p.Val168Phe	p.V168F	ENST00000171111	NM_203500.1	168	Gtc/Ttc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610123	10610123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	469	745	0	ENST00000171111.5:c.587G>T	p.Cys196Phe	p.C196F	ENST00000171111	NM_203500.1	196	tGt/tTt																																																																														
POLE	0	MSKCC	GRCh37	12	133237617	133237617	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	432	697	2	ENST00000320574.5:c.2998del	p.Glu1000LysfsTer7	p.E1000Kfs*7	ENST00000320574	NM_006231.2	1000	Gaa/aa																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134859	41134859	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	221	399	0	ENST00000379561.5:c.769A>G	p.Met257Val	p.M257V	ENST00000379561	NM_002015.3	257	Atg/Gtg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061725	38061726	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	126	344	0	ENST00000250448.2:c.263dup	p.Ser89LeufsTer138	p.S89Lfs*138	ENST00000250448	NM_004496.3	88	ggc/ggGc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59885992	59885992	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	269	584	0	ENST00000259008.2:c.754A>T	p.Thr252Ser	p.T252S	ENST00000259008	NM_032043.2	252	Aca/Tca																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022341	31022341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	196	321	0	ENST00000375687.4:c.1826C>T	p.Thr609Ile	p.T609I	ENST00000375687	NM_015338.5	609	aCt/aTt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356362	66356362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	303	556	1	ENST00000273854.3:c.1135C>A	p.Pro379Thr	p.P379T	ENST00000273854	NM_004439.5	379	Ccg/Acg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32180952	32180952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	312	452	0	ENST00000375023.3:c.2398C>T	p.Pro800Ser	p.P800S	ENST00000375023	NM_004557.3	800	Ccg/Tcg																																																																														
TCEB1	0	MSKCC	GRCh37	8	74858968	74858968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	59	517	0	ENST00000284811.8:c.236A>G	p.Tyr79Cys	p.Y79C	ENST00000284811		79	tAc/tGc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118347625	118347625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	150	685	0	ENST00000534358.1:c.3262G>T	p.Asp1088Tyr	p.D1088Y	ENST00000534358	NM_005933.3	1088	Gat/Tat																																																																														
NEGR1	0	MSKCC	GRCh37	1	72400866	72400866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	22	361	0	ENST00000357731.5:c.305G>T	p.Ser102Ile	p.S102I	ENST00000357731	NM_173808.2	102	aGc/aTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	262	561	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	173	404	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg																																																																														
EGFR	0	MSKCC	GRCh37	7	55224337	55224337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	170	539	0	ENST00000275493.2:c.1118C>T	p.Pro373Leu	p.P373L	ENST00000275493	NM_005228.3	373	cCg/cTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	200	656	0	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	191	549	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
BCL2L1	0	MSKCC	GRCh37	20	30309941	30309941	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	176	473	0	ENST00000307677.4:c.81T>A	p.Phe27Leu	p.F27L	ENST00000307677	NM_138578.1	27	ttT/ttA																																																																														
FLT4	0	MSKCC	GRCh37	5	180047299	180047299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	158	514	0	ENST00000261937.6:c.2416G>A	p.Ala806Thr	p.A806T	ENST00000261937	NM_182925.4	806	Gca/Aca																																																																														
IRF4	0	MSKCC	GRCh37	6	397128	397128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	126	364	1	ENST00000380956.4:c.513G>T	p.Met171Ile	p.M171I	ENST00000380956	NM_001195286.1	171	atG/atT																																																																														
SYK	0	MSKCC	GRCh37	9	93650797	93650797	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	33	227	0	ENST00000375746.1:c.1723G>A	p.Gly575Arg	p.G575R	ENST00000375746	NM_001174167.1	575	Ggg/Agg																																																																														
ATM	0	MSKCC	GRCh37	11	108218030	108218030	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	326	380	0	ENST00000278616.4:c.8609A>G	p.Asp2870Gly	p.D2870G	ENST00000278616	NM_000051.3	2870	gAt/gGt																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137085	64137085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	27	296	0	ENST00000334205.4:c.1596del	p.Lys532AsnfsTer16	p.K532Nfs*16	ENST00000334205	NM_003942.2	532	aaG/aa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46279910	46279910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	103	952	1	ENST00000371998.3:c.3836C>T	p.Ala1279Val	p.A1279V	ENST00000371998		1279	gCc/gTc																																																																														
VHL	0	MSKCC	GRCh37	3	10183797	10183797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	242	718	0	ENST00000256474.2:c.266T>A	p.Leu89His	p.L89H	ENST00000256474	NM_000551.3	89	cTc/cAc																																																																														
BLM	0	MSKCC	GRCh37	15	91341450	91341450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	35	426	1	ENST00000355112.3:c.3241G>T	p.Val1081Leu	p.V1081L	ENST00000355112	NM_000057.2	1081	Gtg/Ttg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266518	198266518	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	30	495	0	ENST00000335508.6:c.2318T>G	p.Leu773Arg	p.L773R	ENST00000335508	NM_012433.2	773	cTt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	379	893	1	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	205	669	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa																																																																														
STK11	0	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	192	636	0	ENST00000326873.7:c.709G>C	p.Asp237His	p.D237H	ENST00000326873	NM_000455.4	237	Gac/Cac																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600428	10600428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	268	852	1	ENST00000171111.5:c.1427G>T	p.Gly476Val	p.G476V	ENST00000171111	NM_203500.1	476	gGg/gTg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420213	88420213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	86	504	0	ENST00000360948.2:c.2473C>A	p.His825Asn	p.H825N	ENST00000360948	NM_001012338.2	825	Cat/Aat																																																																														
RAD51D	0	MSKCC	GRCh37	17	33430564	33430564	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	202	636	0	ENST00000335858.7:c.241-1G>C		p.X81_splice	ENST00000335858	NM_133629.2	81																																																																															
MSH2	0	MSKCC	GRCh37	2	47710071	47710071	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	116	419	0	ENST00000233146.2:c.2788A>C	p.Ile930Leu	p.I930L	ENST00000233146	NM_000251.2	930	Ata/Cta																																																																														
SDHA	0	MSKCC	GRCh37	5	235454	235454	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	105	789	0	ENST00000264932.6:c.1260G>C	p.Gln420His	p.Q420H	ENST00000264932	NM_004168.2	420	caG/caC																																																																														
RAD21	0	MSKCC	GRCh37	8	117868472	117868472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	280	562	0	ENST00000297338.2:c.870G>T	p.Met290Ile	p.M290I	ENST00000297338	NM_006265.2	290	atG/atT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	71	248	1				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	220	716	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																														
INPP4A	0	MSKCC	GRCh37	2	99169415	99169415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	96	342	0	ENST00000074304.5:c.1345G>T	p.Ala449Ser	p.A449S	ENST00000074304	NM_001134224.1	449	Gcc/Tcc																																																																														
ERCC3	0	MSKCC	GRCh37	2	128044281	128044281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	118	415	1	ENST00000285398.2:c.1340C>T	p.Pro447Leu	p.P447L	ENST00000285398	NM_000122.1	447	cCa/cTa																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31386301	31386301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	156	555	0	ENST00000328111.2:c.1526G>A	p.Gly509Asp	p.G509D	ENST00000328111	NM_006892.3	509	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	179	522	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	99	201	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	0	MSKCC	GRCh37	1	27023952	27023952	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	23	66	0	ENST00000324856.7:c.1060del	p.Gln354AsnfsTer9	p.Q354Nfs*9	ENST00000324856	NM_006015.4	353	gCc/gc																																																																														
RB1	0	MSKCC	GRCh37	13	49039501	49039501	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	120	546	0	ENST00000267163.4:c.2486C>A	p.Ser829Ter	p.S829*	ENST00000267163	NM_000321.2	829	tCa/tAa																																																																														
ALK	0	MSKCC	GRCh37	2	29448402	29448402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	172	904	3	ENST00000389048.3:c.3097C>A	p.Leu1033Ile	p.L1033I	ENST00000389048	NM_004304.4	1033	Ctc/Atc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252853	36252853	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0017241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	128	374	0	ENST00000300305.3:c.508+1del		p.X170_splice	ENST00000300305		170																																																																															
ATRX	0	MSKCC	GRCh37	X	76907621	76907621	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	250	552	0	ENST00000373344.5:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000373344	NM_000489.3	1514	Cga/Tga																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149503838	149503838	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	281	428	0	ENST00000261799.4:c.1998C>G	p.Asn666Lys	p.N666K	ENST00000261799	NM_002609.3	666	aaC/aaG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	119	809	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	367	586	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
POLE	0	MSKCC	GRCh37	12	133237689	133237689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	348	786	0	ENST00000320574.5:c.2926C>T	p.Arg976Cys	p.R976C	ENST00000320574	NM_006231.2	976	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0017243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	61	383	2	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245380	153245380	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	115	695	0	ENST00000281708.4:c.1811A>C	p.Lys604Thr	p.K604T	ENST00000281708	NM_033632.3	604	aAa/aCa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251918	153251919	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	94	603	0	ENST00000281708.4:c.1087dup	p.Thr363AsnfsTer2	p.T363Nfs*2	ENST00000281708	NM_033632.3	363	act/aAct																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56189458	56189458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	228	734	0	ENST00000399503.3:c.4490C>A	p.Pro1497His	p.P1497H	ENST00000399503	NM_005921.1	1497	cCt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112174369	112174369	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	28	437	0	ENST00000257430.4:c.3079del	p.Tyr1027IlefsTer10	p.Y1027Ifs*10	ENST00000257430	NM_000038.5	1026	aaT/aa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44910961	44910963	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0017243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	41	549	0	ENST00000377967.4:c.664_666del	p.His222del	p.H222del	ENST00000377967	NM_021140.2	221	tATCat/tat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	172	416	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	44	573	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
POLD1	0	MSKCC	GRCh37	19	50909491	50909491	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139557851		P-0017244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	313	717	0	ENST00000440232.2:c.1295G>A	p.Arg432Gln	p.R432Q	ENST00000440232	NM_002691.3	432	cGg/cAg																																																																														
RET	0	MSKCC	GRCh37	10	43601995	43601995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	268	628	0	ENST00000355710.3:c.1039G>A	p.Val347Met	p.V347M	ENST00000355710	NM_020975.4	347	Gtg/Atg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114910773	114910774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0017244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	233	470	0	ENST00000543371.1:c.893_894dup	p.Pro299SerfsTer17	p.P299Sfs*17	ENST00000543371	NM_001198531.1	298	gtc/gTCtc																																																																														
TP53	0	MSKCC	GRCh37	17	7577513	7577514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGA			P-0017244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	59	406	0	ENST00000269305.4:c.764_767dup	p.Leu257HisfsTer8	p.L257Hfs*8	ENST00000269305	NM_001126112.2	256	aca/acTCACa																																																																														
SETD2	0	MSKCC	GRCh37	3	47155416	47155417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	190	485	0	ENST00000409792.3:c.4664dup	p.Leu1556ThrfsTer32	p.L1556Tfs*32	ENST00000409792	NM_014159.6	1555	ata/atTa																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900372	101900372	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	105	207	0	ENST00000374994.4:c.805+1G>A		p.X269_splice	ENST00000374994	NM_004612.2	269																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	171	195	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	278	346	1	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	278	346	1	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88726656	88726656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	294	354	2	ENST00000360948.2:c.388C>T	p.Arg130Cys	p.R130C	ENST00000360948	NM_001012338.2	130	Cgt/Tgt																																																																														
TSC2	0	MSKCC	GRCh37	16	2129353	2129353	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	395	498	0	ENST00000219476.3:c.3208A>C	p.Thr1070Pro	p.T1070P	ENST00000219476	NM_000548.3	1070	Acg/Ccg																																																																														
BAP1	0	MSKCC	GRCh37	3	52436434	52436434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	218	270	0	ENST00000460680.1:c.2060T>C	p.Met687Thr	p.M687T	ENST00000460680	NM_004656.3	687	aTg/aCg																																																																														
ARAF	0	MSKCC	GRCh37	X	47428940	47428940	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0017246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	366	258	0	ENST00000377045.4:c.1303A>G	p.Ile435Val	p.I435V	ENST00000377045	NM_001654.4	435	Atc/Gtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	79	708	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	112	395	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	109	381	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	147	314	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	46	312	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670327	134670327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	26	263	1	ENST00000398015.3:c.238C>T	p.Arg80Trp	p.R80W	ENST00000398015	NM_004441.4	80	Cgg/Tgg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259173	89259173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	47	288	0	ENST00000336596.2:c.317G>T	p.Cys106Phe	p.C106F	ENST00000336596	NM_005233.5	106	tGc/tTc																																																																														
WWTR1	0	MSKCC	GRCh37	3	149238690	149238690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	73	456	0	ENST00000360632.3:c.1105G>A	p.Val369Ile	p.V369I	ENST00000360632	NM_015472.4	369	Gtt/Att																																																																														
APC	0	MSKCC	GRCh37	5	112175640	112175640	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	87	298	0	ENST00000257430.4:c.4349del	p.Arg1450GlnfsTer23	p.R1450Qfs*23	ENST00000257430	NM_000038.5	1450	cGa/ca																																																																														
MDC1	0	MSKCC	GRCh37	6	30682862	30682862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	167	411	0	ENST00000376406.3:c.91G>A	p.Val31Ile	p.V31I	ENST00000376406	NM_014641.2	31	Gta/Ata																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32172054	32172054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	52	390	0	ENST00000375023.3:c.2978C>T	p.Ala993Val	p.A993V	ENST00000375023	NM_004557.3	993	gCc/gTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066683	94066683	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	82	363	0	ENST00000369303.4:c.1076del	p.Gly359GlufsTer5	p.G359Efs*5	ENST00000369303	NM_004440.3	359	gGa/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	118	654	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																														
DIS3	0	MSKCC	GRCh37	13	73345284	73345284	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	39	435	0	ENST00000377767.4:c.1606-1G>A		p.X536_splice	ENST00000377767	NM_014953.3	536																																																																															
CDKN1A	0	MSKCC	GRCh37	6	36651967	36651967	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	70	363	0	ENST00000244741.5:c.89T>G	p.Leu30Arg	p.L30R	ENST00000244741	NM_000389.4	30	cTg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	226	607	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108206609	108206609	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	139	444	0	ENST00000278616.4:c.8189A>C	p.Gln2730Pro	p.Q2730P	ENST00000278616	NM_000051.3	2730	cAg/cCg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244155	46244155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	56	325	0	ENST00000334344.6:c.2249G>A	p.Gly750Glu	p.G750E	ENST00000334344	NM_152641.2	750	gGg/gAg																																																																														
ARID2	0	MSKCC	GRCh37	12	46245035	46245035	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	158	562	0	ENST00000334344.6:c.3129A>T	p.Gln1043His	p.Q1043H	ENST00000334344	NM_152641.2	1043	caA/caT																																																																														
POLE	0	MSKCC	GRCh37	12	133226349	133226349	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	93	748	0	ENST00000320574.5:c.3709G>T	p.Glu1237Ter	p.E1237*	ENST00000320574	NM_006231.2	1237	Gag/Tag																																																																														
MGA	0	MSKCC	GRCh37	15	42041983	42041983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	173	517	1	ENST00000219905.7:c.6178del	p.Gln2060LysfsTer42	p.Q2060Kfs*42	ENST00000219905	NM_001164273.1	2060	Caa/aa																																																																														
JAK3	0	MSKCC	GRCh37	19	17942532	17942532	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	73	591	0	ENST00000458235.1:c.2756C>A	p.Ala919Glu	p.A919E	ENST00000458235	NM_000215.3	919	gCg/gAg																																																																														
JAK3	0	MSKCC	GRCh37	19	17951146	17951146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	101	496	1	ENST00000458235.1:c.1147G>T	p.Asp383Tyr	p.D383Y	ENST00000458235	NM_000215.3	383	Gac/Tac																																																																														
BARD1	0	MSKCC	GRCh37	2	215595153	215595154	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	46	476	1	ENST00000260947.4:c.1982_1983delinsAT	p.Arg661Asn	p.R661N	ENST00000260947	NM_000465.2	661	aGG/aAT																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902560	1902560	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	91	662	5	ENST00000382891.5:c.179G>T	p.Gly60Val	p.G60V	ENST00000382891	NM_133335.3	60	gGg/gTg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55144597	55144597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	57	442	0	ENST00000257290.5:c.2071G>C	p.Asp691His	p.D691H	ENST00000257290	NM_006206.4	691	Gat/Cat																																																																														
FAT1	0	MSKCC	GRCh37	4	187525028	187525028	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	86	494	0	ENST00000441802.2:c.10652T>A	p.Phe3551Tyr	p.F3551Y	ENST00000441802	NM_005245.3	3551	tTc/tAc																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056173	26056173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	122	344	0	ENST00000343677.2:c.484G>T	p.Ala162Ser	p.A162S	ENST00000343677	NM_005319.3	162	Gcc/Tcc																																																																														
ROS1	0	MSKCC	GRCh37	6	117704560	117704560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	70	474	0	ENST00000368508.3:c.2416C>T	p.Leu806Phe	p.L806F	ENST00000368508	NM_002944.2	806	Ctc/Ttc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468033	50468033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	52	367	2	ENST00000331340.3:c.1268G>A	p.Arg423His	p.R423H	ENST00000331340	NM_006060.4	423	cGc/cAc																																																																														
BRAF	0	MSKCC	GRCh37	7	140494107	140494107	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	57	606	0	ENST00000288602.6:c.1140+1G>A		p.X380_splice	ENST00000288602	NM_004333.4	380																																																																															
KIT	0	MSKCC	GRCh37	4	55593582	55593598	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	AAACCCATGTATGAAGT	AAACCCATGTATGAAGT	CA			P-0017255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	230	412	2	ENST00000288135.5:c.1648_1664delinsCA	p.Lys550_Val555delinsGln	p.K550_V555delinsQ	ENST00000288135	NM_000222.2	550	AAACCCATGTATGAAGTa/CAa																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	371	479	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
MGA	0	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	226	525	1	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061163	38061175	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCGGCCCCCGG	CGCCGGCCCCCGG	-			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	105	144	0	ENST00000250448.2:c.814_826del	p.Pro272AlafsTer45	p.P272Afs*45	ENST00000250448	NM_004496.3	272	CCGGGGGCCGGCGgc/gc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778017	3778017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1393	302	1040	1	ENST00000262367.5:c.7031G>A	p.Arg2344Gln	p.R2344Q	ENST00000262367	NM_004380.2	2344	cGg/cAg																																																																														
CDH1	0	MSKCC	GRCh37	16	68844172	68844172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	564	847	0	ENST00000261769.5:c.760G>T	p.Asp254Tyr	p.D254Y	ENST00000261769	NM_004360.3	254	Gat/Tat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832529	72832529	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	306	422	0	ENST00000268489.5:c.4052del	p.Pro1351GlnfsTer4	p.P1351Qfs*4	ENST00000268489	NM_006885.3	1351	cCa/ca																																																																														
XIAP	0	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	213	790	0	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	26	735	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	274	571	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111475	8111476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	135	588	1	ENST00000346208.3:c.962dupA	p.Thr322AspfsTer30	p.T322Dfs*30	ENST00000346208		321	cag/cAag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151917611	151917611	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	156	682	0	ENST00000262189.6:c.3709C>T	p.Arg1237Ter	p.R1237*	ENST00000262189	NM_170606.2	1237	Cga/Tga																																																																														
DICER1	0	MSKCC	GRCh37	14	95569881	95569881	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	66	315	0	ENST00000343455.3:c.3852del	p.Tyr1285ThrfsTer17	p.Y1285Tfs*17	ENST00000343455	NM_177438.2	1284	ggG/gg																																																																														
ATM	0	MSKCC	GRCh37	11	108214042	108214042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	116	333	0	ENST00000278616.4:c.8362C>T	p.His2788Tyr	p.H2788Y	ENST00000278616	NM_000051.3	2788	Cat/Tat																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212558	36212558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	287	778	0	ENST00000222270.7:c.2309C>T	p.Pro770Leu	p.P770L	ENST00000222270	NM_014727.1	770	cCt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	171	695	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
IGF2	0	MSKCC	GRCh37	11	2154755	2154755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	106	724	3	ENST00000434045.2:c.466G>A	p.Val156Met	p.V156M	ENST00000434045	NM_001127598.1	156	Gtg/Atg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10244380	10244380	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0017263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	63	611	1	ENST00000340748.4:c.4817-3C>T		p.X1606_splice	ENST00000340748		1606																																																																															
APC	0	MSKCC	GRCh37	5	112173841	112173841	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	118	409	0	ENST00000257430.4:c.2551del	p.Ser851ValfsTer10	p.S851Vfs*10	ENST00000257430	NM_000038.5	850	agA/ag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	156	380	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	164	386	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	261	415	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0017264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	139	256	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
SPEN	0	MSKCC	GRCh37	1	16260317	16260317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	193	435	0	ENST00000375759.3:c.7582G>A	p.Asp2528Asn	p.D2528N	ENST00000375759	NM_015001.2	2528	Gac/Aac																																																																														
MDM4	0	MSKCC	GRCh37	1	204518802	204518802	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	93	214	0	ENST00000367182.3:c.1465A>G	p.Ile489Val	p.I489V	ENST00000367182	NM_001278516.1	489	Ata/Gta																																																																														
PTPRS	0	MSKCC	GRCh37	19	5219962	5219962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	210	544	0	ENST00000357368.4:c.3753G>C	p.Gln1251His	p.Q1251H	ENST00000357368	NM_002850.3	1251	caG/caC																																																																														
DNMT1	0	MSKCC	GRCh37	19	10270698	10270698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	193	454	0	ENST00000340748.4:c.1037C>G	p.Ser346Cys	p.S346C	ENST00000340748		346	tCc/tGc																																																																														
SOX2	0	MSKCC	GRCh37	3	181430160	181430160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	55	130	0	ENST00000325404.1:c.12G>T	p.Met4Ile	p.M4I	ENST00000325404	NM_003106.3	4	atG/atT																																																																														
BAP1	0	MSKCC	GRCh37	3	52437714	52437714	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	243	360	0	ENST00000460680.1:c.1447C>T	p.Gln483Ter	p.Q483*	ENST00000460680	NM_004656.3	483	Cag/Tag																																																																														
RB1	0	MSKCC	GRCh37	13	49037931	49037931	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	259	454	0	ENST00000267163.4:c.2172del	p.Ile724MetfsTer2	p.I724Mfs*2	ENST00000267163	NM_000321.2	724	aTt/at																																																																														
CARM1	0	MSKCC	GRCh37	19	11032119	11032119	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0017265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	114	436	0	ENST00000327064.4:c.1684G>C	p.Gly562Arg	p.G562R	ENST00000327064	NM_199141.1	562	Ggg/Cgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	378	542	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138433374	138433374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	484	576	2	ENST00000289153.2:c.1238C>T	p.Thr413Met	p.T413M	ENST00000289153	NM_006219.2	413	aCg/aTg																																																																														
KIT	0	MSKCC	GRCh37	4	55573397	55573397	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	123	513	0	ENST00000288135.5:c.1059A>T	p.Arg353Ser	p.R353S	ENST00000288135	NM_000222.2	353	agA/agT																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0017273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	20	388	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	67	501	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	44	397	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	211	361	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436416	49436416	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	113	357	0	ENST00000301067.7:c.5795T>A	p.Leu1932Ter	p.L1932*	ENST00000301067	NM_003482.3	1932	tTg/tAg																																																																														
FANCA	0	MSKCC	GRCh37	16	89836597	89836597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	87	435	0	ENST00000389301.3:c.2293C>T	p.Leu765Phe	p.L765F	ENST00000389301	NM_000135.2	765	Ctc/Ttc																																																																														
JAK3	0	MSKCC	GRCh37	19	17947999	17947999	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1380	92	455	0	ENST00000458235.1:c.1725G>C	p.Leu575Phe	p.L575F	ENST00000458235	NM_000215.3	575	ttG/ttC																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250676	26250676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	73	306	0	ENST00000446824.2:c.158G>A	p.Arg53His	p.R53H	ENST00000446824	NM_021018.2	53	cGc/cAc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223707	53223707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017276-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	61	268	1	ENST00000375401.3:c.3652C>T	p.Arg1218Cys	p.R1218C	ENST00000375401	NM_004187.3	1218	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017284-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			912	1225	372	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55221822	55221822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149840192		P-0017284-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1605	2176	750	1	ENST00000275493.2:c.866C>T	p.Ala289Val	p.A289V	ENST00000275493	NM_005228.3	289	gCc/gTc																																																																														
MTOR	0	MSKCC	GRCh37	1	11210251	11210251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017284-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			748	576	482	0	ENST00000361445.4:c.4502G>A	p.Trp1501Ter	p.W1501*	ENST00000361445	NM_004958.3	1501	tGg/tAg																																																																														
RB1	0	MSKCC	GRCh37	13	49030426	49030426	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017284-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			170	232	310	0	ENST00000267163.4:c.1901C>A	p.Ser634Ter	p.S634*	ENST00000267163	NM_000321.2	634	tCa/tAa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821207	72821227	+	inframe_deletion	In_Frame_Del	DEL	TGGCATCGAGGGCTGAACCCC	TGGCATCGAGGGCTGAACCCC	-			P-0017287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	282	438	1	ENST00000268489.5:c.10948_10968del	p.Gly3650_Pro3656del	p.G3650_P3656del	ENST00000268489	NM_006885.3	3650	GGGGTTCAGCCCTCGATGCCA/-																																																																														
TP53	0	MSKCC	GRCh37	17	7572954	7572954	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	280	426	0	ENST00000269305.4:c.1155del	p.Phe385LeufsTer37	p.F385Lfs*37	ENST00000269305	NM_001126112.2	385	ttC/tt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106482	27106482	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0017293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	340	614	0	ENST00000324856.7:c.6093T>A	p.Tyr2031Ter	p.Y2031*	ENST00000324856	NM_006015.4	2031	taT/taA																																																																														
RARA	0	MSKCC	GRCh37	17	38504591	38504591	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	261	583	0	ENST00000254066.5:c.202T>C	p.Ser68Pro	p.S68P	ENST00000254066	NM_000964.3	68	Tct/Cct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	891	532	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7574002	7574002	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	353	648	0	ENST00000269305.4:c.1025delG	p.Arg342GlnfsTer3	p.R342Qfs*3	ENST00000269305	NM_001126112.2	342	cGa/ca																																																																														
BCOR	0	MSKCC	GRCh37	X	39933574	39933574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	94	410	0	ENST00000378444.4:c.1025G>A	p.Arg342Gln	p.R342Q	ENST00000378444	NM_001123385.1	342	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	211	459	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
FLT1	0	MSKCC	GRCh37	13	29005423	29005423	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	105	361	0	ENST00000282397.4:c.838C>T	p.Arg280Ter	p.R280*	ENST00000282397	NM_002019.4	280	Cga/Tga																																																																														
INPP4B	0	MSKCC	GRCh37	4	142950049	142950049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	114	429	0	ENST00000262992.4:c.2661G>T	p.Glu887Asp	p.E887D	ENST00000262992	NM_001101669.1	887	gaG/gaT																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	242	319	0	ENST00000349496.5:c.98C>A	p.Ser33Tyr	p.S33Y	ENST00000349496	NM_001904.3	33	tCt/tAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	276	446	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	301	570	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CCND1	0	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	312	680	0	ENST00000227507.2:c.859C>T	p.Pro287Ser	p.P287S	ENST00000227507	NM_053056.2	287	Ccc/Tcc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	197	407	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	291	440	7	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72831357	72831358	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG	rs552138038		P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	86	243	3	ENST00000268489.5:c.5221_5223dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	-/CAA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720803	89720804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	74	256	0	ENST00000371953.3:c.955dup	p.Thr319AsnfsTer6	p.T319Nfs*6	ENST00000371953	NM_000314.4	318	-/A																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774681	73774682	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	44	99	0	ENST00000254810.4:c.405_406delAG	p.Arg135SerfsTer12	p.R135Sfs*12	ENST00000254810	NM_005324.3	135	agAGct/agct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952088	178952088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	363	550	0	ENST00000263967.3:c.3143A>G	p.His1048Arg	p.H1048R	ENST00000263967	NM_006218.2	1048	cAt/cGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088659	27088659	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	488	817	2	ENST00000324856.7:c.2272delC	p.Gln758ArgfsTer75	p.Q758Rfs*75	ENST00000324856	NM_006015.4	756	aaC/aa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107008	27107008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	254	453	0	ENST00000324856.7:c.6619C>T	p.Gln2207Ter	p.Q2207*	ENST00000324856	NM_006015.4	2207	Cag/Tag																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	208	404	1	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402421	139402421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	404	673	2	ENST00000277541.6:c.3496G>A	p.Gly1166Ser	p.G1166S	ENST00000277541	NM_017617.3	1166	Ggc/Agc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2213961	2213961	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	382	747	2	ENST00000326181.6:c.45delG	p.Ser17AlafsTer111	p.S17Afs*111	ENST00000326181	NM_032271.2	14	Ggg/gg																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798461	45798461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	454	705	1	ENST00000372115.3:c.508C>T	p.Arg170Trp	p.R170W	ENST00000372115	NM_001048171.1	170	Cgg/Tgg																																																																														
FUBP1	0	MSKCC	GRCh37	1	78435627	78435627	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	460	748	0	ENST00000370768.2:c.193del	p.Arg65AspfsTer3	p.R65Dfs*3	ENST00000370768	NM_003902.3	65	Aga/ga																																																																														
SMYD3	0	MSKCC	GRCh37	1	246518381	246518381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1202	362	544	0	ENST00000388985.4:c.180G>A	p.Met60Ile	p.M60I	ENST00000388985		60	atG/atA																																																																														
PTEN	0	MSKCC	GRCh37	10	89692927	89692953	+	inframe_deletion	In_Frame_Del	DEL	ATATTTATTACATCGGGGCAAATTTTT	ATATTTATTACATCGGGGCAAATTTTT	-			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	301	571	0	ENST00000371953.3:c.412_438del	p.Tyr138_Leu146del	p.Y138_L146del	ENST00000371953	NM_000314.4	137	gcATATTTATTACATCGGGGCAAATTTTTa/gca																																																																														
GLI1	0	MSKCC	GRCh37	12	57865076	57865076	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	500	907	3	ENST00000228682.2:c.2557del	p.Gln853SerfsTer93	p.Q853Sfs*93	ENST00000228682	NM_005269.2	851	taC/ta																																																																														
GLI1	0	MSKCC	GRCh37	12	57865760	57865761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	367	738	0	ENST00000228682.2:c.3243dupC	p.Asn1082GlnfsTer24	p.N1082Qfs*24	ENST00000228682	NM_005269.2	1079	-/C																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7976226	7976228	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	201	400	0	ENST00000319144.4:c.1967_1969del	p.Glu656del	p.E656del	ENST00000319144	NM_001139.2	656	gAGGcc/gcc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12044498	12044498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	280	496	0	ENST00000353533.5:c.1121C>T	p.Ala374Val	p.A374V	ENST00000353533	NM_003010.3	374	gCc/gTc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880240	37880240	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	467	780	0	ENST00000269571.5:c.2284A>C	p.Lys762Gln	p.K762Q	ENST00000269571		762	Aaa/Caa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288814	15288814	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	86	111	0	ENST00000263388.2:c.3925del	p.Arg1309AlafsTer111	p.R1309Afs*111	ENST00000263388	NM_000435.2	1309	Cgc/gc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214398	36214398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs868041281		P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	331	768	3	ENST00000222270.7:c.3057del	p.Gly1020AlafsTer4	p.G1020Afs*4	ENST00000222270	NM_014727.1	1018	Aaa/aa																																																																														
AKT2	0	MSKCC	GRCh37	19	40761117	40761117	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	346	630	1	ENST00000392038.2:c.235C>T	p.Gln79Ter	p.Q79*	ENST00000392038	NM_001626.4	79	Cag/Tag																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526285	31526285	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201151813		P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	454	808	2	ENST00000344624.3:c.755G>A	p.Arg252Gln	p.R252Q	ENST00000344624		252	cGa/cAa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591177	67591281	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAAGAAG	TACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCGGCAAAAGAAG	-			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	210	386	0	ENST00000274335.5:c.1745+26_1780del		p.X582_splice	ENST00000274335		582																																																																															
FLT4	0	MSKCC	GRCh37	5	180055948	180055948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	349	760	0	ENST00000261937.6:c.1037C>T	p.Thr346Met	p.T346M	ENST00000261937	NM_182925.4	346	aCg/aTg																																																																														
ESR1	0	MSKCC	GRCh37	6	152129501	152129501	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	33	121	0	ENST00000206249.3:c.452+2T>C		p.X151_splice	ENST00000206249	NM_000125.3	151																																																																															
ARID1B	0	MSKCC	GRCh37	6	157100396	157100397	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	41	111	0	ENST00000346085.5:c.1334dup	p.Pro446AlafsTer89	p.P446Afs*89	ENST00000346085	NM_020732.3	445	gcg/gCcg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	72	467	0	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0017302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1239	121	492	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	40	192	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	133	230	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67660553	67660553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1342	126	488	2	ENST00000264010.4:c.1453C>T	p.His485Tyr	p.H485Y	ENST00000264010	NM_006565.3	485	Cat/Tat																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101685	27101686	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0017302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1483	152	531	1	ENST00000324856.7:c.4969_4970dup	p.Arg1658GlyfsTer5	p.R1658Gfs*5	ENST00000324856	NM_006015.4	1656	agg/agGAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89717739	89717740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	114	379	0	ENST00000371953.3:c.765dup	p.Glu256ArgfsTer42	p.E256Rfs*42	ENST00000371953	NM_000314.4	255	gta/gtAa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71944764	71944775	+	inframe_deletion	In_Frame_Del	DEL	ACCTCCCAGTTC	ACCTCCCAGTTC	-			P-0017302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1476	93	584	0	ENST00000298229.2:c.2189_2200del	p.Thr730_Phe733del	p.T730_F733del	ENST00000298229	NM_001567.3	730	ACCTCCCAGTTC/-																																																																														
CCND2	0	MSKCC	GRCh37	12	4409060	4409060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	60	324	2	ENST00000261254.3:c.755C>T	p.Ala252Val	p.A252V	ENST00000261254	NM_001759.3	252	gCg/gTg																																																																														
DUSP4	0	MSKCC	GRCh37	8	29207537	29207537	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	69	344	0	ENST00000240100.2:c.259del	p.Leu87CysfsTer140	p.L87Cfs*140	ENST00000240100	NM_001394.6	87	Ctg/tg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	228	382	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1402	262	617	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	58	381	0	ENST00000342988.3:c.1609G>C	p.Asp537His	p.D537H	ENST00000342988	NM_005359.5	537	Gac/Cac																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880255	37880255	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	240	519	0	ENST00000269571.5:c.2299A>T	p.Ile767Phe	p.I767F	ENST00000269571		767	Atc/Ttc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911550	134911550	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	177	422	1	ENST00000398015.3:c.2015T>A	p.Met672Lys	p.M672K	ENST00000398015	NM_004441.4	672	aTg/aAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151864336	151864336	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	146	425	0	ENST00000262189.6:c.9645del	p.Lys3215AsnfsTer34	p.K3215Nfs*34	ENST00000262189	NM_170606.2	3215	aaA/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	297	457	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450300	50450300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	148	408	0	ENST00000331340.3:c.484C>T	p.Arg162Trp	p.R162W	ENST00000331340	NM_006060.4	162	Cgg/Tgg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9783245	9783245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	261	553	0	ENST00000377346.4:c.2489G>A	p.Arg830His	p.R830H	ENST00000377346	NM_005026.3	830	cGt/cAt																																																																														
TRAF7	0	MSKCC	GRCh37	16	2213950	2213950	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	92	528	0	ENST00000326181.6:c.29A>T	p.Asn10Ile	p.N10I	ENST00000326181	NM_032271.2	10	aAc/aTc																																																																														
NF1	0	MSKCC	GRCh37	17	29556250	29556250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	84	308	1	ENST00000358273.4:c.2617C>T	p.Arg873Cys	p.R873C	ENST00000358273	NM_001042492.2	873	Cgt/Tgt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156541	55156541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	193	460	1	ENST00000257290.5:c.2942G>A	p.Arg981His	p.R981H	ENST00000257290	NM_006206.4	981	cGt/cAt																																																																														
TERT	0	MSKCC	GRCh37	5	1295425	1295425	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	44	52	1				ENST00000310581	NM_198253.2																																																																																
APC	0	MSKCC	GRCh37	5	112137018	112137018	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	177	488	0	ENST00000257430.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000257430	NM_000038.5	258	Gag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112175581	112175582	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGCCACCAAGCAG			P-0017308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	115	469	0	ENST00000257430.4:c.4292_4305dup	p.Ser1436CysfsTer42	p.S1436Cfs*42	ENST00000257430	NM_000038.5	1430	-/ATGCCACCAAGCAG																																																																														
TP53	0	MSKCC	GRCh37	17	7573998	7573999	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0017311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	322	593	0	ENST00000269305.4:c.1028_1029delAG	p.Glu343AlafsTer3	p.E343Afs*3	ENST00000269305	NM_001126112.2	343	gAG/g																																																																														
BRCA1	0	MSKCC	GRCh37	17	41201213	41201213	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0017311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	483	541	1	ENST00000357654.3:c.5333-2A>G		p.X1778_splice	ENST00000357654	NM_007294.3	1778																																																																															
NOTCH2	0	MSKCC	GRCh37	1	120462032	120462032	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201996575		P-0017312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	143	321	1	ENST00000256646.2:c.5684G>A	p.Arg1895His	p.R1895H	ENST00000256646	NM_024408.3	1895	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	458	644	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45655272	45655272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	111	615	1	ENST00000407780.3:c.580C>T	p.Arg194Trp	p.R194W	ENST00000407780	NM_001283052.1	194	Cgg/Tgg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912478	32912478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	44	521	0	ENST00000380152.3:c.3986G>C	p.Arg1329Thr	p.R1329T	ENST00000380152		1329	aGa/aCa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740824	145740824	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	169	541	0	ENST00000428558.2:c.1276G>C	p.Asp426His	p.D426H	ENST00000428558	NM_004260.3	426	Gat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	182	506	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	287	525	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0017315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	119	421	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
INHBA	0	MSKCC	GRCh37	7	41739911	41739911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	379	334	0	ENST00000242208.4:c.62C>T	p.Ser21Phe	p.S21F	ENST00000242208	NM_002192.2	21	tCc/tTc																																																																														
FH	0	MSKCC	GRCh37	1	241665762	241665762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	221	409	0	ENST00000366560.3:c.1217A>G	p.Asn406Ser	p.N406S	ENST00000366560	NM_000143.3	406	aAt/aGt																																																																														
STAT3	0	MSKCC	GRCh37	17	40468891	40468891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	35	286	1	ENST00000264657.5:c.2173C>A	p.Pro725Thr	p.P725T	ENST00000264657	NM_139276.2	725	Ccg/Acg																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134744	41134744	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	278	282	0	ENST00000379561.5:c.884G>A	p.Trp295Ter	p.W295*	ENST00000379561	NM_002015.3	295	tGg/tAg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914168	32914404	+	inframe_deletion	In_Frame_Del	DEL	TTGTTACGAGGCATTGGATGATTCAGAGGATATTCTTCATAACTCTCTAGATAATGATGAATGTAGCACGCATTCACATAAGGTTTTTGCTGACATTCAGAGTGAAGAAATTTTACAACATAACCAAAATATGTCTGGATTGGAGAAAGTTTCTAAAATATCACCTTGTGATGTTAGTTTGGAAACTTCAGATATATGTAAATGTAGTATAGGGAAGCTTCATAAGTCAGTCTCATC	TTGTTACGAGGCATTGGATGATTCAGAGGATATTCTTCATAACTCTCTAGATAATGATGAATGTAGCACGCATTCACATAAGGTTTTTGCTGACATTCAGAGTGAAGAAATTTTACAACATAACCAAAATATGTCTGGATTGGAGAAAGTTTCTAAAATATCACCTTGTGATGTTAGTTTGGAAACTTCAGATATATGTAAATGTAGTATAGGGAAGCTTCATAAGTCAGTCTCATC	-			P-0017317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	449	512	0	ENST00000380152.3:c.5677_5913del	p.Cys1893_Ser1971del	p.C1893_S1971del	ENST00000380152		1892	ggTTGTTACGAGGCATTGGATGATTCAGAGGATATTCTTCATAACTCTCTAGATAATGATGAATGTAGCACGCATTCACATAAGGTTTTTGCTGACATTCAGAGTGAAGAAATTTTACAACATAACCAAAATATGTCTGGATTGGAGAAAGTTTCTAAAATATCACCTTGTGATGTTAGTTTGGAAACTTCAGATATATGTAAATGTAGTATAGGGAAGCTTCATAAGTCAGTCTCATCt/ggt																																																																														
CDH1	0	MSKCC	GRCh37	16	68849335	68849631	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCAACAGTTAAGGATTTAATTTTATTTTTACTAACACAAAATGTTTCGTTTTGTTTTTAACTTCATTGTTTCTGCTCTCTAGGGCTTGGATTTTGAGGCCAAGCAGCAGTACATTCTACACGTAGCAGTGACGAATGTGGTACCTTTTGAGGTCTCTCTCACCACCTCCACAGCCACCGTCACCGTGGATGTGCTGGATGTGAATGAAGCCCCCATCTTTGTGCCTCCTGAAAAGAGAGTGGAAGTGTCCGAGGACTTTGGCGTGGGCCAGGAAATCACATCCTACACTGCCCAGG	AGCAACAGTTAAGGATTTAATTTTATTTTTACTAACACAAAATGTTTCGTTTTGTTTTTAACTTCATTGTTTCTGCTCTCTAGGGCTTGGATTTTGAGGCCAAGCAGCAGTACATTCTACACGTAGCAGTGACGAATGTGGTACCTTTTGAGGTCTCTCTCACCACCTCCACAGCCACCGTCACCGTGGATGTGCTGGATGTGAATGAAGCCCCCATCTTTGTGCCTCCTGAAAAGAGAGTGGAAGTGTCCGAGGACTTTGGCGTGGGCCAGGAAATCACATCCTACACTGCCCAGG	-			P-0017317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	67	82	0	ENST00000261769.5:c.1321-80_1537del		p.X441_splice	ENST00000261769	NM_004360.3	441																																																																															
RICTOR	0	MSKCC	GRCh37	5	38960511	38960511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	279	261	0	ENST00000357387.3:c.1840G>C	p.Glu614Gln	p.E614Q	ENST00000357387	NM_152756.3	614	Gaa/Caa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106523519	106523519	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	369	336	0	ENST00000359195.3:c.2671A>T	p.Ile891Phe	p.I891F	ENST00000359195	NM_002649.2	891	Att/Ttt																																																																														
KMT2C	0	MSKCC	GRCh37	7	152027794	152027794	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	533	514	0	ENST00000262189.6:c.281C>G	p.Ala94Gly	p.A94G	ENST00000262189	NM_170606.2	94	gCt/gGt																																																																														
CBFB	0	MSKCC	GRCh37	16	67063636	67063641	+	frameshift_variant	Frame_Shift_Del	DEL	TACACG	TACACG	GGACC			P-0017320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	65	383	1	ENST00000412916.2:c.85_90delinsGGACC	p.Tyr29GlyfsTer60	p.Y29Gfs*60	ENST00000412916		29	TACACG/GGACC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	101	630	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7579368	7579368	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	131	659	0	ENST00000269305.4:c.319T>G	p.Tyr107Asp	p.Y107D	ENST00000269305	NM_001126112.2	107	Tac/Gac																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	238	451	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
SPEN	0	MSKCC	GRCh37	1	16235971	16235971	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	78	379	0	ENST00000375759.3:c.1037C>G	p.Ser346Cys	p.S346C	ENST00000375759	NM_015001.2	346	tCt/tGt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180538	94180538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	185	361	1	ENST00000323929.3:c.1630G>A	p.Asp544Asn	p.D544N	ENST00000323929	NM_005591.3	544	Gac/Aac																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	321	524	1	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																														
SESN2	0	MSKCC	GRCh37	1	28599120	28599120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	197	634	0	ENST00000253063.3:c.566G>T	p.Trp189Leu	p.W189L	ENST00000253063	NM_031459.4	189	tGg/tTg																																																																														
IGF1	0	MSKCC	GRCh37	12	102869514	102869514	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	133	435	0	ENST00000307046.8:c.127A>T	p.Thr43Ser	p.T43S	ENST00000307046	NM_001111285.1	43	Acc/Tcc																																																																														
SETD2	0	MSKCC	GRCh37	3	47144880	47144880	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	378	466	0	ENST00000409792.3:c.4873C>A	p.Arg1625Ser	p.R1625S	ENST00000409792	NM_014159.6	1625	Cgt/Agt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151856060	151856060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	83	475	0	ENST00000262189.6:c.11558G>T	p.Arg3853Leu	p.R3853L	ENST00000262189	NM_170606.2	3853	cGg/cTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465657	8465657	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	118	385	0	ENST00000356435.5:c.3523A>G	p.Arg1175Gly	p.R1175G	ENST00000356435		1175	Agg/Ggg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139418184	139418184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	225	524	0	ENST00000277541.6:c.388C>T	p.Pro130Ser	p.P130S	ENST00000277541	NM_017617.3	130	Ccg/Tcg																																																																														
MED12	0	MSKCC	GRCh37	X	70348172	70348172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	193	464	0	ENST00000374080.3:c.3236C>A	p.Ala1079Glu	p.A1079E	ENST00000374080		1079	gCa/gAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	613	490	1	ENST00000269305.4:c.746G>A	p.Arg249Lys	p.R249K	ENST00000269305	NM_001126112.2	249	aGg/aAg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495686	56495686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	416	435	0	ENST00000267101.3:c.3876G>A	p.Met1292Ile	p.M1292I	ENST00000267101	NM_001982.3	1292	atG/atA																																																																														
KDR	0	MSKCC	GRCh37	4	55970831	55970831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	248	458	0	ENST00000263923.4:c.1966G>T	p.Val656Phe	p.V656F	ENST00000263923	NM_002253.2	656	Gtc/Ttc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	83	269	0				ENST00000310581	NM_198253.2																																																																																
SPOP	0	MSKCC	GRCh37	17	47699369	47699369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	169	522	0	ENST00000347630.2:c.139G>A	p.Glu47Lys	p.E47K	ENST00000347630	NM_001007230.1	47	Gaa/Aaa																																																																														
EGFR	0	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0017328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	238	579	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																														
ATM	0	MSKCC	GRCh37	11	108199963	108199963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	41	353	0	ENST00000278616.4:c.7305C>A	p.Asn2435Lys	p.N2435K	ENST00000278616	NM_000051.3	2435	aaC/aaA																																																																														
SPOP	0	MSKCC	GRCh37	17	47685280	47685280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	164	587	0	ENST00000347630.2:c.670G>A	p.Val224Ile	p.V224I	ENST00000347630	NM_001007230.1	224	Gtt/Att																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	156	318	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	156	318	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1370	423	636	1	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602767	10602767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1389	296	571	1	ENST00000171111.5:c.811G>A	p.Val271Met	p.V271M	ENST00000171111	NM_203500.1	271	Gtg/Atg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1340	129	466	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	156	318	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
ARID2	0	MSKCC	GRCh37	12	46233120	46233120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	92	193	0	ENST00000334344.6:c.1339G>T	p.Val447Leu	p.V447L	ENST00000334344	NM_152641.2	447	Gtg/Ttg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432753	49432753	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	169	388	3	ENST00000301067.7:c.8386C>T	p.Gln2796Ter	p.Q2796*	ENST00000301067	NM_003482.3	2796	Caa/Taa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444978	49444978	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	117	256	0	ENST00000301067.7:c.2488G>T	p.Glu830Ter	p.E830*	ENST00000301067	NM_003482.3	830	Gaa/Taa																																																																														
MSI1	0	MSKCC	GRCh37	12	120785281	120785281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	189	408	0	ENST00000257552.2:c.827C>T	p.Ala276Val	p.A276V	ENST00000257552	NM_002442.3	276	gCa/gTa																																																																														
NF1	0	MSKCC	GRCh37	17	29422373	29422373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	400	462	1	ENST00000358273.4:c.46C>T	p.Arg16Cys	p.R16C	ENST00000358273	NM_001042492.2	16	Cgc/Tgc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288413	15288413	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	195	364	0	ENST00000263388.2:c.4326C>A	p.Cys1442Ter	p.C1442*	ENST00000263388	NM_000435.2	1442	tgC/tgA																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223748	36223748	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1729	246	589	0	ENST00000222270.7:c.6298G>C	p.Gly2100Arg	p.G2100R	ENST00000222270	NM_014727.1	2100	Ggg/Cgg																																																																														
ALK	0	MSKCC	GRCh37	2	29443618	29443618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1316	236	443	1	ENST00000389048.3:c.3599C>A	p.Ala1200Glu	p.A1200E	ENST00000389048	NM_004304.4	1200	gCg/gAg																																																																														
SETD2	0	MSKCC	GRCh37	3	47165861	47165861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	156	369	0	ENST00000409792.3:c.265C>G	p.Leu89Val	p.L89V	ENST00000409792	NM_014159.6	89	Ctc/Gtc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127387	55127387	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1401	96	530	0	ENST00000257290.5:c.175T>A	p.Tyr59Asn	p.Y59N	ENST00000257290	NM_006206.4	59	Tac/Aac																																																																														
RICTOR	0	MSKCC	GRCh37	5	38966750	38966750	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	131	343	0	ENST00000357387.3:c.1292T>C	p.Leu431Ser	p.L431S	ENST00000357387	NM_152756.3	431	tTa/tCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	332	603	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
JAK3	0	MSKCC	GRCh37	19	17955145	17955145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	299	577	0	ENST00000458235.1:c.82G>A	p.Val28Met	p.V28M	ENST00000458235	NM_000215.3	28	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	253	401	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SETD2	0	MSKCC	GRCh37	3	47158225	47158225	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	79	382	0	ENST00000409792.3:c.4474C>T	p.Arg1492Ter	p.R1492*	ENST00000409792	NM_014159.6	1492	Cga/Tga																																																																														
SESN2	0	MSKCC	GRCh37	1	28605739	28605739	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150802897		P-0017332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	161	478	4	ENST00000253063.3:c.1343G>A	p.Arg448His	p.R448H	ENST00000253063	NM_031459.4	448	cGc/cAc																																																																														
CBL	0	MSKCC	GRCh37	11	119170220	119170220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	47	236	0	ENST00000264033.4:c.2450C>T	p.Ser817Phe	p.S817F	ENST00000264033	NM_005188.3	817	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7579340	7579341	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	231	515	0	ENST00000269305.4:c.346dup	p.Ser116PhefsTer33	p.S116Ffs*33	ENST00000269305	NM_001126112.2	116	tct/tTct																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691926	30691926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	90	392	0	ENST00000359013.4:c.503G>A	p.Cys168Tyr	p.C168Y	ENST00000359013	NM_001024847.2	168	tGc/tAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413147	139413147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	438	599	2	ENST00000277541.6:c.995G>T	p.Cys332Phe	p.C332F	ENST00000277541	NM_017617.3	332	tGc/tTc																																																																														
BCOR	0	MSKCC	GRCh37	X	39933241	39933241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1394	74	685	1	ENST00000378444.4:c.1358C>T	p.Ser453Phe	p.S453F	ENST00000378444	NM_001123385.1	453	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	276	632	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ATM	0	MSKCC	GRCh37	11	108121594	108121595	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0017333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	271	578	0	ENST00000278616.4:c.1402_1403delAA	p.Lys468GlufsTer18	p.K468Efs*18	ENST00000278616	NM_000051.3	468	AAg/g																																																																														
CHEK1	0	MSKCC	GRCh37	11	125507402	125507403	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	280	631	1	ENST00000428830.2:c.783dup	p.Asp262ArgfsTer2	p.D262Rfs*2	ENST00000428830	NM_001114121.2	259	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7578181	7578192	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCTCATAG	GGCGGCTCATAG	-			P-0017333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	188	616	0	ENST00000269305.4:c.657_668del	p.Tyr220_Pro223del	p.Y220_P223del	ENST00000269305	NM_001126112.2	219	ccCTATGAGCCGCCt/cct																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974697	21974698	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0017333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	186	368	0	ENST00000304494.5:c.129_130del	p.Ser43ArgfsTer76	p.S43Rfs*76	ENST00000304494	NM_000077.4	43	agTTac/agac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974697	21974698	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0017333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	186	368	0	ENST00000304494.5:c.129_130del	p.Ser43ArgfsTer76	p.S43Rfs*76	ENST00000304494	NM_000077.4	43	agTTac/agac																																																																														
KDM6A	0	MSKCC	GRCh37	X	44911048	44911048	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0017333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	240	257	0	ENST00000377967.4:c.748+1G>C		p.X250_splice	ENST00000377967	NM_021140.2	250																																																																															
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	695	627	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786131	3786131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1696	738	681	0	ENST00000262367.5:c.4634G>T	p.Trp1545Leu	p.W1545L	ENST00000262367	NM_004380.2	1545	tGg/tTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89712001	89712001	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	161	278	0	ENST00000371953.3:c.619A>G	p.Ser207Gly	p.S207G	ENST00000371953	NM_000314.4	207	Agt/Ggt																																																																														
FLT3	0	MSKCC	GRCh37	13	28601305	28601305	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	476	593	1	ENST00000241453.7:c.2127A>T	p.Lys709Asn	p.K709N	ENST00000241453	NM_004119.2	709	aaA/aaT																																																																														
FLT3	0	MSKCC	GRCh37	13	28611427	28611427	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	304	335	0	ENST00000241453.7:c.1206-2A>T		p.X402_splice	ENST00000241453	NM_004119.2	402																																																																															
RB1	0	MSKCC	GRCh37	13	48953729	48953729	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	295	275	0	ENST00000267163.4:c.1333-1G>A		p.X445_splice	ENST00000267163	NM_000321.2	445																																																																															
RB1	0	MSKCC	GRCh37	13	49039246	49039246	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	398	559	0	ENST00000267163.4:c.2325+1del		p.R775fs	ENST00000267163	NM_000321.2	775	aGg/ag																																																																														
MGA	0	MSKCC	GRCh37	15	42050027	42050028	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	191	439	0	ENST00000219905.7:c.7181_7182delinsTT	p.Arg2394Ile	p.R2394I	ENST00000219905	NM_001164273.1	2394	aGG/aTT																																																																														
BLM	0	MSKCC	GRCh37	15	91290653	91290653	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	462	615	0	ENST00000355112.3:c.31G>T	p.Glu11Ter	p.E11*	ENST00000355112	NM_000057.2	11	Gag/Tag																																																																														
CDK12	0	MSKCC	GRCh37	17	37627294	37627294	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	533	575	0	ENST00000447079.4:c.1209G>C	p.Lys403Asn	p.K403N	ENST00000447079	NM_015083.1	403	aaG/aaC																																																																														
BRIP1	0	MSKCC	GRCh37	17	59861722	59861722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	474	629	0	ENST00000259008.2:c.1537G>T	p.Ala513Ser	p.A513S	ENST00000259008	NM_032043.2	513	Gca/Tca																																																																														
ERBB4	0	MSKCC	GRCh37	2	212989619	212989619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	324	330	0	ENST00000342788.4:c.92G>T	p.Gly31Val	p.G31V	ENST00000342788	NM_005235.2	31	gGa/gTa																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794889	242794889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	514	482	0	ENST00000334409.5:c.320A>G	p.His107Arg	p.H107R	ENST00000334409	NM_005018.2	107	cAc/cGc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42866466	42866466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	738	825	0	ENST00000398585.3:c.166G>A	p.Gly56Arg	p.G56R	ENST00000398585	NM_001135099.1	56	Gga/Aga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691920	30691920	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	374	456	0	ENST00000359013.4:c.497A>T	p.Asp166Val	p.D166V	ENST00000359013	NM_001024847.2	166	gAt/gTt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177519	56177519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	333	428	0	ENST00000399503.3:c.2492C>T	p.Pro831Leu	p.P831L	ENST00000399503	NM_005921.1	831	cCc/cTc																																																																														
MEN1	0	MSKCC	GRCh37	11	64572549	64572549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	429	558	0	ENST00000337652.1:c.1322G>T	p.Trp441Leu	p.W441L	ENST00000337652	NM_130803.2	441	tGg/tTg																																																																														
TSC2	0	MSKCC	GRCh37	16	2125942	2126472	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCTTGCGGCAGAAAGCCCCGGCAGCCTTTGTCCCCAAGGCCTGAGCGCCTCGGTTTTTTGCACTTCATGCCCTGGGGATGTTTCCCTGCTGCCAGGATGGAGTGCCAGCCCCCTTCTCATCTCAGGTTTAATCAGTACATCGTGTGTCTGGCCCATCACGTCATAGCCATGTGGTTCATCAGGTGCCGCCTGCCCTTCCGGAAGGATTTTGTCCCTTTCATCACTAAGGTGGGCTCAGGGCCGGTGAAGGCTGTGTCTCTCGGTAGGCCAGGGCTTGCTTTGCCCTTGGCTGTCCATGGTCGGGCAGAGTGACAGGCAGGTGGAGGGCAGTGGGAGGGTGTTTGGGGCTGTGCCTGTGGCGCTGGGGGCTCTGCTGGGCAGCCTGCAGGGCTTTGATGCGCGGCAGGCATTGAGGGGTGGGAGCTGGGTGCCGCCGCCTTGCCCCTAGCCTGCAGCTTGTCCCTGGCCAGGGGGCACCCGGCAGGCCTGGTGAGGGCCTCCAGCCCCCATTGCCACCCCTCACTGTCTG	GGCCTTGCGGCAGAAAGCCCCGGCAGCCTTTGTCCCCAAGGCCTGAGCGCCTCGGTTTTTTGCACTTCATGCCCTGGGGATGTTTCCCTGCTGCCAGGATGGAGTGCCAGCCCCCTTCTCATCTCAGGTTTAATCAGTACATCGTGTGTCTGGCCCATCACGTCATAGCCATGTGGTTCATCAGGTGCCGCCTGCCCTTCCGGAAGGATTTTGTCCCTTTCATCACTAAGGTGGGCTCAGGGCCGGTGAAGGCTGTGTCTCTCGGTAGGCCAGGGCTTGCTTTGCCCTTGGCTGTCCATGGTCGGGCAGAGTGACAGGCAGGTGGAGGGCAGTGGGAGGGTGTTTGGGGCTGTGCCTGTGGCGCTGGGGGCTCTGCTGGGCAGCCTGCAGGGCTTTGATGCGCGGCAGGCATTGAGGGGTGGGAGCTGGGTGCCGCCGCCTTGCCCCTAGCCTGCAGCTTGTCCCTGGCCAGGGGGCACCCGGCAGGCCTGGTGAGGGCCTCCAGCCCCCATTGCCACCCCTCACTGTCTG	-			P-0017348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	543	367	0	ENST00000219476.3:c.2639+51_2743-18del		p.X880_splice	ENST00000219476	NM_000548.3	880																																																																															
ATRX	0	MSKCC	GRCh37	X	76855029	76855029	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	166	526	1	ENST00000373344.5:c.5807del	p.Lys1936ArgfsTer19	p.K1936Rfs*19	ENST00000373344	NM_000489.3	1936	aAg/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	770	452	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	312	442	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	312	442	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	312	442	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
NF2	0	MSKCC	GRCh37	22	30032739	30032739	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	265	176	0	ENST00000338641.4:c.115-1G>C		p.X39_splice	ENST00000338641	NM_000268.3	39																																																																															
TP53	0	MSKCC	GRCh37	17	7577537	7577546	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGTTCATG	CCGGTTCATG	-			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	272	417	0	ENST00000269305.4:c.735_744del	p.Met246GlyfsTer96	p.M246Gfs*96	ENST00000269305	NM_001126112.2	245	ggCATGAACCGG/gg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575102	48575102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	233	332	0	ENST00000342988.3:c.296G>A	p.Trp99Ter	p.W99*	ENST00000342988	NM_005359.5	99	tGg/tAg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244107	5244107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	457	475	0	ENST00000357368.4:c.1375G>A	p.Gly459Ser	p.G459S	ENST00000357368	NM_002850.3	459	Ggc/Agc																																																																														
EP300	0	MSKCC	GRCh37	22	41574081	41574081	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	479	416	0	ENST00000263253.7:c.6370del	p.Val2124SerfsTer10	p.V2124Sfs*10	ENST00000263253	NM_001429.3	2122	caG/ca																																																																														
FAT1	0	MSKCC	GRCh37	4	187541964	187541964	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	205	330	0	ENST00000441802.2:c.5776A>T	p.Lys1926Ter	p.K1926*	ENST00000441802	NM_005245.3	1926	Aag/Tag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32172139	32172153	+	inframe_deletion	In_Frame_Del	DEL	AGTTCTGTCCATCGT	AGTTCTGTCCATCGT	-			P-0017349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	375	487	0	ENST00000375023.3:c.2879_2893del	p.Tyr960_Asn964del	p.Y960_N964del	ENST00000375023	NM_004557.3	960	tACGATGGACAGAACTgc/tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	464	385	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
BAP1	0	MSKCC	GRCh37	3	52439134	52439134	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	192	390	0	ENST00000460680.1:c.1108C>G	p.Pro370Ala	p.P370A	ENST00000460680	NM_004656.3	370	Ccc/Gcc																																																																														
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	19	279	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																																																														
MEN1	0	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	60	497	1	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115915	8115915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	290	424	0	ENST00000346208.3:c.1262del	p.Pro421ArgfsTer54	p.P421Rfs*54	ENST00000346208		421	Ccg/cg																																																																														
TP63	0	MSKCC	GRCh37	3	189608650	189608650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	68	537	0	ENST00000264731.3:c.1725G>T	p.Gln575His	p.Q575H	ENST00000264731	NM_003722.4	575	caG/caT																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	542	514	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	44	592	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GNAS	0	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	16	426	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	38	756	1	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																														
IRS2	0	MSKCC	GRCh37	13	110436621	110436621	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	42	748	0	ENST00000375856.3:c.1780T>G	p.Ser594Ala	p.S594A	ENST00000375856	NM_003749.2	594	Tcg/Gcg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	192	473	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0017359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	156	349	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
CBFB	0	MSKCC	GRCh37	16	67063656	67063673	+	inframe_deletion	In_Frame_Del	DEL	GCCCCACGAGGAACGCCA	GCCCCACGAGGAACGCCA	-			P-0017359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	169	501	0	ENST00000412916.2:c.106_123del	p.Pro36_Gln41del	p.P36_Q41del	ENST00000412916		35	cgGCCCCACGAGGAACGCCAg/cgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	293	472	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0017360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	174	415	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	70	398	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11143985	11143985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	195	322	3	ENST00000344626.4:c.3566G>A	p.Arg1189Gln	p.R1189Q	ENST00000344626	NM_003072.3	1189	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7576881	7576881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	247	418	0	ENST00000269305.4:c.965C>T	p.Pro322Leu	p.P322L	ENST00000269305	NM_001126112.2	322	cCa/cTa																																																																														
NF1	0	MSKCC	GRCh37	17	29653187	29653187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	65	354	1	ENST00000358273.4:c.5185G>T	p.Ala1729Ser	p.A1729S	ENST00000358273	NM_001042492.2	1729	Gcc/Tcc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5210730	5210730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	162	497	0	ENST00000357368.4:c.5321C>T	p.Thr1774Met	p.T1774M	ENST00000357368	NM_002850.3	1774	aCg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112170691	112170691	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	184	355	1	ENST00000257430.4:c.1787C>G	p.Ser596Ter	p.S596*	ENST00000257430	NM_000038.5	596	tCa/tGa																																																																														
AMER1	0	MSKCC	GRCh37	X	63410100	63410100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	127	425	0	ENST00000330258.3:c.3067C>G	p.Pro1023Ala	p.P1023A	ENST00000330258	NM_152424.3	1023	Ccc/Gcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	31	519	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	85	554	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
SYK	0	MSKCC	GRCh37	9	93636534	93636534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	27	495	1	ENST00000375746.1:c.964C>T	p.Pro322Ser	p.P322S	ENST00000375746	NM_001174167.1	322	Ccg/Tcg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670708	134670708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	56	480	0	ENST00000398015.3:c.619C>T	p.Pro207Ser	p.P207S	ENST00000398015	NM_004441.4	207	Cca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7578202	7578202	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	46	673	0	ENST00000269305.4:c.647T>G	p.Val216Gly	p.V216G	ENST00000269305	NM_001126112.2	216	gTg/gGg																																																																														
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	23	398	0	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486206	8486206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	16	352	1	ENST00000356435.5:c.2611C>T	p.Leu871Phe	p.L871F	ENST00000356435		871	Ctt/Ttt																																																																														
CBL	0	MSKCC	GRCh37	11	119149242	119149242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	62	460	0	ENST00000264033.4:c.1250C>T	p.Pro417Leu	p.P417L	ENST00000264033	NM_005188.3	417	cCt/cTt																																																																														
POLE	0	MSKCC	GRCh37	12	133209253	133209253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	46	545	0	ENST00000320574.5:c.6133C>T	p.Pro2045Ser	p.P2045S	ENST00000320574	NM_006231.2	2045	Ccc/Tcc																																																																														
POLE	0	MSKCC	GRCh37	12	133244226	133244226	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	25	384	0	ENST00000320574.5:c.2182C>G	p.Arg728Gly	p.R728G	ENST00000320574	NM_006231.2	728	Cgg/Ggg																																																																														
RB1	0	MSKCC	GRCh37	13	48881544	48881544	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	73	198	0	ENST00000267163.4:c.264+2T>C		p.X88_splice	ENST00000267163	NM_000321.2	88																																																																															
MGA	0	MSKCC	GRCh37	15	42000019	42000019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	40	656	1	ENST00000219905.7:c.2282C>T	p.Pro761Leu	p.P761L	ENST00000219905	NM_001164273.1	761	cCt/cTt																																																																														
TSC2	0	MSKCC	GRCh37	16	2134569	2134569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	47	638	0	ENST00000219476.3:c.4346C>T	p.Ser1449Phe	p.S1449F	ENST00000219476	NM_000548.3	1449	tCc/tTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271923	15271923	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	82	646	0	ENST00000263388.2:c.6516G>A	p.Trp2172Ter	p.W2172*	ENST00000263388	NM_000435.2	2172	tgG/tgA																																																																														
ALK	0	MSKCC	GRCh37	2	29420543	29420543	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	25	327	0	ENST00000389048.3:c.3939-1G>A		p.X1313_splice	ENST00000389048	NM_004304.4	1313																																																																															
SOS1	0	MSKCC	GRCh37	2	39250128	39250128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	31	588	1	ENST00000402219.2:c.1441C>T	p.Pro481Ser	p.P481S	ENST00000402219	NM_005633.3	481	Cct/Tct																																																																														
PPARG	0	MSKCC	GRCh37	3	12458428	12458428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	33	671	0	ENST00000287820.6:c.1045G>A	p.Gly349Arg	p.G349R	ENST00000287820	NM_015869.4	349	Gga/Aga																																																																														
MYD88	0	MSKCC	GRCh37	3	38180252	38180252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	37	456	0	ENST00000396334.3:c.100C>T	p.Pro34Ser	p.P34S	ENST00000396334	NM_002468.4	34	Ccc/Tcc																																																																														
ATR	0	MSKCC	GRCh37	3	142186901	142186901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	43	389	0	ENST00000350721.4:c.6562C>T	p.Pro2188Ser	p.P2188S	ENST00000350721	NM_001184.3	2188	Ccc/Tcc																																																																														
FLT4	0	MSKCC	GRCh37	5	180041073	180041073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	102	709	0	ENST00000261937.6:c.3326C>T	p.Ser1109Phe	p.S1109F	ENST00000261937	NM_182925.4	1109	tCt/tTt																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839699	27839699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	25	331	2	ENST00000328488.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000328488	NM_003533.2	132	cGa/cAa																																																																														
LYN	0	MSKCC	GRCh37	8	56866480	56866480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	41	560	2	ENST00000519728.1:c.727C>T	p.Pro243Ser	p.P243S	ENST00000519728	NM_002350.3	243	Ccc/Tcc																																																																														
PREX2	0	MSKCC	GRCh37	8	69104681	69104681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	49	406	0	ENST00000288368.4:c.4525G>A	p.Gly1509Arg	p.G1509R	ENST00000288368	NM_024870.2	1509	Gga/Aga																																																																														
GATA3	0	MSKCC	GRCh37	10	8115919	8115920	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	114	384	0	ENST00000346208.3:c.1266dup	p.His423AlafsTer84	p.H423Afs*84	ENST00000346208		422	atg/atGg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	77	625	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438203	49438203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	48	740	3	ENST00000301067.7:c.5066G>A	p.Arg1689His	p.R1689H	ENST00000301067	NM_003482.3	1689	cGt/cAt																																																																														
MET	0	MSKCC	GRCh37	7	116397581	116397647	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTCTCCTATGTGGTAAGGAAGATTCTATCCTATCATGTTTGATTTTTACTTAATCTATTTAAATTA	ATTCTCCTATGTGGTAAGGAAGATTCTATCCTATCATGTTTGATTTTTACTTAATCTATTTAAATTA	-			P-0017366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	71	735	0	ENST00000397752.3:c.1953_1966-45del		p.X651_splice	ENST00000397752	NM_000245.2	651																																																																															
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	43	689	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	904	823	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																														
NF1	0	MSKCC	GRCh37	17	29557286	29557286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	120	338	0	ENST00000358273.4:c.2999G>A	p.Arg1000His	p.R1000H	ENST00000358273	NM_001042492.2	1000	cGt/cAt																																																																														
CSDE1	0	MSKCC	GRCh37	1	115268918	115269150	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTCTTGGAGTTAGAATTACGACCTAAAAGTCGCACACAAGTTGCAACCTGCTGTCCAGGCCTCTGTTTGTCACTAATACTAAATTCAACCTGTGAAAATTAAGGATGCTCATTAACACCATATCACTTCCACACCAATCTCCTTAACTCAGAAAACAAGACCTATAACTCCCCCAGCGCATGCTTTTCATTCCAAATATCCTTTGTTATTACTTCAATGAAATTGATTTTCA	CCTCTTGGAGTTAGAATTACGACCTAAAAGTCGCACACAAGTTGCAACCTGCTGTCCAGGCCTCTGTTTGTCACTAATACTAAATTCAACCTGTGAAAATTAAGGATGCTCATTAACACCATATCACTTCCACACCAATCTCCTTAACTCAGAAAACAAGACCTATAACTCCCCCAGCGCATGCTTTTCATTCCAAATATCCTTTGTTATTACTTCAATGAAATTGATTTTCA	-			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	120	611	0	ENST00000438362.2:c.1603-143_1692del		p.X535_splice	ENST00000438362	NM_001242891.1	535																																																																															
ATM	0	MSKCC	GRCh37	11	108124644	108124644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	292	501	1	ENST00000278616.4:c.2002G>C	p.Glu668Gln	p.E668Q	ENST00000278616	NM_000051.3	668	Gaa/Caa																																																																														
RB1	0	MSKCC	GRCh37	13	49030345	49030345	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	321	341	0	ENST00000267163.4:c.1822del	p.Ser608LeufsTer3	p.S608Lfs*3	ENST00000267163	NM_000321.2	607	cTt/ct																																																																														
PLCG2	0	MSKCC	GRCh37	16	81965113	81965113	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	203	496	0	ENST00000359376.3:c.2593C>G	p.Gln865Glu	p.Q865E	ENST00000359376	NM_002661.3	865	Cag/Gag																																																																														
RUNX1	0	MSKCC	GRCh37	21	36253004	36253004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1286	245	475	1	ENST00000300305.3:c.358G>A	p.Ala120Thr	p.A120T	ENST00000300305		120	Gcc/Acc																																																																														
BAP1	0	MSKCC	GRCh37	3	52440861	52440861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	247	504	0	ENST00000460680.1:c.643G>A	p.Gly215Ser	p.G215S	ENST00000460680	NM_004656.3	215	Ggc/Agc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138413679	138414013	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGTTGAAATCCAGAAGCTCTAGGGCCTCCCGGGGGGGCAGTTTAGGCCAAATCTGAAGCAGCGCCTGAAGCTGTTTAAAAAATGAAACTGGTTCAGAAATAATGGGGGACAAAAGTAATCTAATTTTCCTTGACACACAGGAGCACCAAGATAGGTCAAAAGAAGGCAAAGCTCACTTTTAATTATTGATGCCTCAAAAATCCATTCCTGTTAATAGAGACTAATAAAGATTGTCTTTGTTGTTGAAACATTCTATAGATTAAGTCTGAAAAGCTATGAAGTACTTACCCCCAAATAAATTTTATGGGTGAGAGAGAAAAAAATGTTGAATTTG	TAGTTGAAATCCAGAAGCTCTAGGGCCTCCCGGGGGGGCAGTTTAGGCCAAATCTGAAGCAGCGCCTGAAGCTGTTTAAAAAATGAAACTGGTTCAGAAATAATGGGGGACAAAAGTAATCTAATTTTCCTTGACACACAGGAGCACCAAGATAGGTCAAAAGAAGGCAAAGCTCACTTTTAATTATTGATGCCTCAAAAATCCATTCCTGTTAATAGAGACTAATAAAGATTGTCTTTGTTGTTGAAACATTCTATAGATTAAGTCTGAAAAGCTATGAAGTACTTACCCCCAAATAAATTTTATGGGTGAGAGAGAAAAAAATGTTGAATTTG	-			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	141	436	0	ENST00000289153.2:c.1771-264_1841del		p.X591_splice	ENST00000289153	NM_006219.2	591																																																																															
BCL6	0	MSKCC	GRCh37	3	187449570	187449570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	168	347	0	ENST00000232014.4:c.310G>T	p.Ala104Ser	p.A104S	ENST00000232014	NM_001130845.1	104	Gct/Tct																																																																														
DROSHA	0	MSKCC	GRCh37	5	31449495	31449495	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	201	335	0	ENST00000344624.3:c.2714A>G	p.Asn905Ser	p.N905S	ENST00000344624		905	aAt/aGt																																																																														
BCOR	0	MSKCC	GRCh37	X	39911410	39911411	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0017368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	252	512	0	ENST00000378444.4:c.5219_5220del	p.Ser1740CysfsTer8	p.S1740Cfs*8	ENST00000378444	NM_001123385.1	1740	tCT/t																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	30	386	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	0	MSKCC	GRCh37	3	178947852	178947852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	99	361	0	ENST00000263967.3:c.2727C>G	p.Phe909Leu	p.F909L	ENST00000263967	NM_006218.2	909	ttC/ttG																																																																														
ARID2	0	MSKCC	GRCh37	12	46242729	46242729	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	42	487	0	ENST00000334344.6:c.1691del	p.Ser564Ter	p.S564*	ENST00000334344	NM_152641.2	564	tCa/ta																																																																														
TET1	0	MSKCC	GRCh37	10	70404926	70404926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	63	611	0	ENST00000373644.4:c.2440G>T	p.Asp814Tyr	p.D814Y	ENST00000373644	NM_030625.2	814	Gat/Tat																																																																														
KMT2A	0	MSKCC	GRCh37	11	118359363	118359363	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	36	354	1	ENST00000534358.1:c.4367A>T	p.His1456Leu	p.H1456L	ENST00000534358	NM_005933.3	1456	cAc/cTc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127446	55127446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	79	730	0	ENST00000257290.5:c.234C>A	p.Ser78Arg	p.S78R	ENST00000257290	NM_006206.4	78	agC/agA																																																																														
MDC1	0	MSKCC	GRCh37	6	30675447	30675447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	58	481	0	ENST00000376406.3:c.2909G>C	p.Gly970Ala	p.G970A	ENST00000376406	NM_014641.2	970	gGg/gCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0017375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	654	591	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943632	9943632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	296	482	0	ENST00000330684.3:c.1309C>T	p.Arg437Trp	p.R437W	ENST00000330684	NM_001134407.1	437	Cgg/Tgg																																																																														
NF1	0	MSKCC	GRCh37	17	29677279	29677279	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	505	470	0	ENST00000358273.4:c.7400del	p.Ser2467Ter	p.S2467*	ENST00000358273	NM_001042492.2	2467	tCa/ta																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302291	15302291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1381	180	710	0	ENST00000263388.2:c.980C>T	p.Ala327Val	p.A327V	ENST00000263388	NM_000435.2	327	gCc/gTc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	111	489	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578491	7578491	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	366	875	1	ENST00000269305.4:c.439delG	p.Val147LeufsTer23	p.V147Lfs*23	ENST00000269305	NM_001126112.2	147	Gtt/tt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032526	12032526	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	157	388	0	ENST00000353533.5:c.962T>G	p.Val321Gly	p.V321G	ENST00000353533	NM_003010.3	321	gTg/gGg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78865440	78865547	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTGACTCAAGTCTCACTGCTGCTCCACAATCATTTTCCAGCCCCAGTGACTGTTATTGTCCCTTCTCCCTCTCGGCAGGAGCTGGTGGTGGCTCTGAGTCATCTTG	TGGTGACTCAAGTCTCACTGCTGCTCCACAATCATTTTCCAGCCCCAGTGACTGTTATTGTCCCTTCTCCCTCTCGGCAGGAGCTGGTGGTGGCTCTGAGTCATCTTG	-			P-0017376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	24	131	0	ENST00000306801.3:c.1984-76_2015del		p.X662_splice	ENST00000306801	NM_020761.2	662																																																																															
RPTOR	0	MSKCC	GRCh37	17	78865567	78865567	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	215	687	0	ENST00000306801.3:c.2033del	p.Phe678SerfsTer9	p.F678Sfs*9	ENST00000306801	NM_020761.2	677	aaT/aa																																																																														
APC	0	MSKCC	GRCh37	5	112175918	112175918	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	160	378	0	ENST00000257430.4:c.4629del	p.Glu1544AsnfsTer21	p.E1544Nfs*21	ENST00000257430	NM_000038.5	1543	Aaa/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	168	572	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
AR	0	MSKCC	GRCh37	X	66766501	66766501	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	90	674	0	ENST00000374690.3:c.1513C>G	p.Pro505Ala	p.P505A	ENST00000374690	NM_000044.3	505	Cct/Gct																																																																														
NTRK1	0	MSKCC	GRCh37	1	156838403	156838403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	168	568	1	ENST00000524377.1:c.681G>T	p.Trp227Cys	p.W227C	ENST00000524377	NM_002529.3	227	tgG/tgT																																																																														
PGR	0	MSKCC	GRCh37	11	100999186	100999186	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	57	555	0	ENST00000325455.5:c.616T>A	p.Ser206Thr	p.S206T	ENST00000325455	NM_001202474.3	206	Tcc/Acc																																																																														
ATM	0	MSKCC	GRCh37	11	108163473	108163473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	57	534	0	ENST00000278616.4:c.4564G>C	p.Gly1522Arg	p.G1522R	ENST00000278616	NM_000051.3	1522	Ggt/Cgt																																																																														
ATM	0	MSKCC	GRCh37	11	108181043	108181043	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	28	232	0	ENST00000278616.4:c.5918+1G>T		p.X1973_splice	ENST00000278616	NM_000051.3	1973																																																																															
PIK3C2G	0	MSKCC	GRCh37	12	18435145	18435145	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201124495		P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	151	435	1	ENST00000266497.5:c.130G>A	p.Val44Ile	p.V44I	ENST00000266497		44	Gta/Ata																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444936	49444937	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	82	378	1	ENST00000301067.7:c.2529_2530delinsTT	p.Pro844Ser	p.P844S	ENST00000301067	NM_003482.3	843	tcCCcc/tcTTcc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99467228	99467228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	35	299	0	ENST00000268035.6:c.2609G>T	p.Gly870Val	p.G870V	ENST00000268035	NM_000875.3	870	gGa/gTa																																																																														
SLX4	0	MSKCC	GRCh37	16	3641037	3641037	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	56	902	0	ENST00000294008.3:c.2602G>C	p.Glu868Gln	p.E868Q	ENST00000294008	NM_032444.2	868	Gaa/Caa																																																																														
ALK	0	MSKCC	GRCh37	2	29519767	29519767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	105	514	0	ENST00000389048.3:c.1804G>T	p.Asp602Tyr	p.D602Y	ENST00000389048	NM_004304.4	602	Gat/Tat																																																																														
EP300	0	MSKCC	GRCh37	22	41573968	41573968	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	38	588	0	ENST00000263253.7:c.6253A>T	p.Ile2085Phe	p.I2085F	ENST00000263253	NM_001429.3	2085	Atc/Ttc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390171	89390171	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	55	298	1	ENST00000336596.2:c.920A>T	p.Glu307Val	p.E307V	ENST00000336596	NM_005233.5	307	gAg/gTg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670814	134670814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	26	310	0	ENST00000398015.3:c.725G>T	p.Gly242Val	p.G242V	ENST00000398015	NM_004441.4	242	gGg/gTg																																																																														
KDR	0	MSKCC	GRCh37	4	55984804	55984804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	79	588	0	ENST00000263923.4:c.325G>T	p.Asp109Tyr	p.D109Y	ENST00000263923	NM_002253.2	109	Gac/Tac																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213923	66213923	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	56	400	0	ENST00000273854.3:c.2509-2A>T		p.X837_splice	ENST00000273854	NM_004439.5	837																																																																															
INHBA	0	MSKCC	GRCh37	7	41729733	41729733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	56	457	0	ENST00000242208.4:c.796G>C	p.Glu266Gln	p.E266Q	ENST00000242208	NM_002192.2	266	Gag/Cag																																																																														
BCOR	0	MSKCC	GRCh37	X	39922045	39922045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	84	680	0	ENST00000378444.4:c.4127G>A	p.Gly1376Glu	p.G1376E	ENST00000378444	NM_001123385.1	1376	gGa/gAa																																																																														
BCOR	0	MSKCC	GRCh37	X	39933273	39933273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	80	702	0	ENST00000378444.4:c.1326del	p.Leu443CysfsTer8	p.L443Cfs*8	ENST00000378444	NM_001123385.1	442	gaC/ga																																																																														
RBM10	0	MSKCC	GRCh37	X	47040946	47040946	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	103	741	0	ENST00000329236.7:c.1242del	p.Met415CysfsTer211	p.M415Cfs*211	ENST00000329236	NM_001204466.1	414	tcG/tc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	5	479	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593615	+	inframe_deletion	In_Frame_Del	DEL	AGTGGAAGGTTGTTG	AGTGGAAGGTTGTTG	-			P-0017387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	311	376	0	ENST00000288135.5:c.1669_1683del	p.Trp557_Glu561del	p.W557_E561del	ENST00000288135	NM_000222.2	556	cAGTGGAAGGTTGTTGag/cag																																																																														
TP53	0	MSKCC	GRCh37	17	7577555	7577555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	302	480	0	ENST00000269305.4:c.726C>G	p.Cys242Trp	p.C242W	ENST00000269305	NM_001126112.2	242	tgC/tgG																																																																														
ATM	0	MSKCC	GRCh37	11	108127026	108127026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	238	427	0	ENST00000278616.4:c.2209G>A	p.Glu737Lys	p.E737K	ENST00000278616	NM_000051.3	737	Gaa/Aaa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	322	536	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
RIT1	0	MSKCC	GRCh37	1	155880464	155880464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	367	481	0	ENST00000368323.3:c.89G>T	p.Gly30Val	p.G30V	ENST00000368323	NM_006912.5	30	gGt/gTt																																																																														
FLT1	0	MSKCC	GRCh37	13	28980027	28980027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	173	361	0	ENST00000282397.4:c.1441G>T	p.Asp481Tyr	p.D481Y	ENST00000282397	NM_002019.4	481	Gac/Tac																																																																														
MGA	0	MSKCC	GRCh37	15	42003513	42003513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	144	494	0	ENST00000219905.7:c.3050C>T	p.Ala1017Val	p.A1017V	ENST00000219905	NM_001164273.1	1017	gCa/gTa																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041614	14041614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	195	365	0	ENST00000311895.7:c.2161G>T	p.Glu721Ter	p.E721*	ENST00000311895	NM_005236.2	721	Gaa/Taa																																																																														
RPTOR	0	MSKCC	GRCh37	17	78882665	78882665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	177	580	0	ENST00000306801.3:c.2456C>G	p.Ala819Gly	p.A819G	ENST00000306801	NM_020761.2	819	gCt/gGt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610085	10610085	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	414	644	0	ENST00000171111.5:c.625A>G	p.Met209Val	p.M209V	ENST00000171111	NM_203500.1	209	Atg/Gtg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098821	178099325	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTAACTGAGCGAAAAAGGCTTTCTCTTGCTCCTTTTGGAGTTGTTCTTGTCTTTCCTTTTCAAGTTTTTTCTGTTTTTCCAGCTCATACTCTTTCCGTCGCTGACTGAAGTCAAATACTTCTCGACTTACTCCAAGATCTATATCTTGCCTCCAAAGTATGTCAATCAAATCCATGTCCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAAATGACAGATACCACATAAATTAATTCACATTATGCCACTGTTGATGGTGGGAAGTGGGGAGATTACAAATACAATCTAAATGAGAACACAGATCCAATGTTCTAGAAGAGCACAGTTAATTCCATTCAATGAATCTATTCATTAAAGACAACAAACAACCTACAAACACATAGCCATCCATTCTAATCACTTGGATCATTAATGATAGGGTGATGGTAGAGGTCACTAAAGGGCAAAGTCACAAATGGTTTGAATGAGAAGAAATCCCACCCTTGTTTAA	TGTAACTGAGCGAAAAAGGCTTTCTCTTGCTCCTTTTGGAGTTGTTCTTGTCTTTCCTTTTCAAGTTTTTTCTGTTTTTCCAGCTCATACTCTTTCCGTCGCTGACTGAAGTCAAATACTTCTCGACTTACTCCAAGATCTATATCTTGCCTCCAAAGTATGTCAATCAAATCCATGTCCTATGTTTAAGACAAAAAAAGGAAGGAGAGAGCTCATGTTTTTTAAATGACAGATACCACATAAATTAATTCACATTATGCCACTGTTGATGGTGGGAAGTGGGGAGATTACAAATACAATCTAAATGAGAACACAGATCCAATGTTCTAGAAGAGCACAGTTAATTCCATTCAATGAATCTATTCATTAAAGACAACAAACAACCTACAAACACATAGCCATCCATTCTAATCACTTGGATCATTAATGATAGGGTGATGGTAGAGGTCACTAAAGGGCAAAGTCACAAATGGTTTGAATGAGAAGAAATCCCACCCTTGTTTAA	-			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	118	597	0	ENST00000397062.3:c.46-326_224del		p.X16_splice	ENST00000397062	NM_006164.4	16																																																																															
CHEK2	0	MSKCC	GRCh37	22	29121090	29121090	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	328	642	1	ENST00000328354.6:c.467A>T	p.Tyr156Phe	p.Y156F	ENST00000328354	NM_007194.3	156	tAc/tTc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217116	66217116	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	40	380	3	ENST00000273854.3:c.2499C>A	p.Tyr833Ter	p.Y833*	ENST00000273854	NM_004439.5	833	taC/taA																																																																														
INPP4B	0	MSKCC	GRCh37	4	143081671	143081671	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	28	329	0	ENST00000262992.4:c.1403G>C	p.Ser468Thr	p.S468T	ENST00000262992	NM_001101669.1	468	aGt/aCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	45	573	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987177	36987177	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	126	609	3	ENST00000354822.5:c.512del	p.Gly171AlafsTer9	p.G171Afs*9	ENST00000354822	NM_001079668.2	171	gGc/gc																																																																														
TP53	0	MSKCC	GRCh37	17	7578517	7578520	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-			P-0017389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	114	821	0	ENST00000269305.4:c.410_413del	p.Leu137ProfsTer32	p.L137Pfs*32	ENST00000269305	NM_001126112.2	137	cTGGCc/cc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0017390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	237	445	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
PTEN	0	MSKCC	GRCh37	10	89624299	89624299	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	146	465	0	ENST00000371953.3:c.73T>G	p.Leu25Val	p.L25V	ENST00000371953	NM_000314.4	25	Ttg/Gtg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	73	211	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0017412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	112	276	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0017412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	112	276	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11136107	11136107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	113	491	0	ENST00000344626.4:c.3091G>A	p.Gly1031Ser	p.G1031S	ENST00000344626	NM_003072.3	1031	Ggc/Agc																																																																														
TSC2	0	MSKCC	GRCh37	16	2136325	2136325	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	148	436	0	ENST00000219476.3:c.4794del	p.Asp1598GlufsTer27	p.D1598Efs*27	ENST00000219476	NM_000548.3	1598	gaC/ga																																																																														
TSC2	0	MSKCC	GRCh37	16	2137938	2137939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	133	390	0	ENST00000219476.3:c.5067dup	p.Asp1690ArgfsTer16	p.D1690Rfs*16	ENST00000219476	NM_000548.3	1688	-/A																																																																														
ALK	0	MSKCC	GRCh37	2	29416431	29416431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	89	496	0	ENST00000389048.3:c.4522G>A	p.Gly1508Ser	p.G1508S	ENST00000389048	NM_004304.4	1508	Ggc/Agc																																																																														
BRAF	0	MSKCC	GRCh37	7	140449179	140449179	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	52	340	0	ENST00000288602.6:c.1900A>G	p.Ser634Gly	p.S634G	ENST00000288602	NM_004333.4	634	Agc/Ggc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	84	368	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	110	418	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258035	123258035	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	141	466	0	ENST00000358487.5:c.1646A>C	p.Asn549Thr	p.N549T	ENST00000358487	NM_000141.4	549	aAt/aCt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023208	27023227	+	frameshift_variant	Frame_Shift_Del	DEL	GGAACGCGGGCCCTAGGCCC	GGAACGCGGGCCCTAGGCCC	-			P-0017413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	71	203	0	ENST00000324856.7:c.315_334del	p.Asn106ProfsTer4	p.N106Pfs*4	ENST00000324856	NM_006015.4	105	gGGAACGCGGGCCCTAGGCCC/g																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101650	27101669	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTGTTGAAGCCACACAGC	CTCTGTTGAAGCCACACAGC	-			P-0017413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	152	597	0	ENST00000324856.7:c.4934_4953del	p.Ser1645CysfsTer46	p.S1645Cfs*46	ENST00000324856	NM_006015.4	1644	ggCTCTGTTGAAGCCACACAGCct/ggct																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100546	157100547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	68	229	0	ENST00000346085.5:c.1486dup	p.Arg496LysfsTer39	p.R496Kfs*39	ENST00000346085	NM_020732.3	495	caa/cAaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	51	201	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	120	467	1	ENST00000269305.4:c.581T>A	p.Leu194His	p.L194H	ENST00000269305	NM_001126112.2	194	cTt/cAt																																																																														
EP300	0	MSKCC	GRCh37	22	41551083	41551083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	103	429	0	ENST00000263253.7:c.3227G>A	p.Arg1076His	p.R1076H	ENST00000263253	NM_001429.3	1076	cGt/cAt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99251236	99251236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	88	447	0	ENST00000268035.6:c.540C>A	p.Asp180Glu	p.D180E	ENST00000268035	NM_000875.3	180	gaC/gaA																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993648	72993648	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	67	373	0	ENST00000268489.5:c.397A>G	p.Ile133Val	p.I133V	ENST00000268489	NM_006885.3	133	Atc/Gtc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12013711	12013711	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	78	350	0	ENST00000353533.5:c.653A>C	p.His218Pro	p.H218P	ENST00000353533	NM_003010.3	218	cAc/cCc																																																																														
BRD4	0	MSKCC	GRCh37	19	15383813	15383813	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	68	406	0	ENST00000263377.2:c.98C>G	p.Ala33Gly	p.A33G	ENST00000263377	NM_058243.2	33	gCc/gGc																																																																														
CASP8	0	MSKCC	GRCh37	2	202149553	202149553	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	66	372	0	ENST00000358485.4:c.994A>C	p.Thr332Pro	p.T332P	ENST00000358485	NM_001080125.1	332	Acc/Ccc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643374	52643374	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	103	523	0	ENST00000394830.3:c.2522A>G	p.Gln841Arg	p.Q841R	ENST00000394830	NM_018313.4	841	cAa/cGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	300	452	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952141	178952142	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0017422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	231	415	2	ENST00000263967.3:c.3196_3197delinsTT	p.Ala1066Leu	p.A1066L	ENST00000263967	NM_006218.2	1066	GCa/TTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874092	151874092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	161	555	0	ENST00000262189.6:c.8446T>A	p.Ser2816Thr	p.S2816T	ENST00000262189	NM_170606.2	2816	Tcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0017424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	559	632	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	373	501	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0017424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	532	606	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16021200	16021200	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0017424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	232	248	0	ENST00000268712.3:c.2055+2T>G		p.X685_splice	ENST00000268712	NM_006311.3	685																																																																															
KMT2B	0	MSKCC	GRCh37	19	36220154	36220154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1460	338	499	1	ENST00000222270.7:c.4874C>T	p.Ser1625Phe	p.S1625F	ENST00000222270	NM_014727.1	1625	tCc/tTc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153259084	153259084	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	163	201	0	ENST00000281708.4:c.731G>A	p.Trp244Ter	p.W244*	ENST00000281708	NM_033632.3	244	tGg/tAg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	337	696	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	168	463	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64132833	64132833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1309	130	644	1	ENST00000334205.4:c.967C>T	p.Arg323Cys	p.R323C	ENST00000334205	NM_003942.2	323	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	218	601	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105635	27105635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	122	377	0	ENST00000324856.7:c.5246G>T	p.Arg1749Met	p.R1749M	ENST00000324856	NM_006015.4	1749	aGg/aTg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217206	66217207	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	135	526	1	ENST00000273854.3:c.2408_2409delinsAA	p.Ala803Glu	p.A803E	ENST00000273854	NM_004439.5	803	gCC/gAA																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213898	66213898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	104	522	0	ENST00000273854.3:c.2532G>T	p.Trp844Cys	p.W844C	ENST00000273854	NM_004439.5	844	tgG/tgT																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843473	156843473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	123	416	0	ENST00000524377.1:c.899G>T	p.Cys300Phe	p.C300F	ENST00000524377	NM_002529.3	300	tGc/tTc																																																																														
NUF2	0	MSKCC	GRCh37	1	163313579	163313579	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	266	550	0	ENST00000271452.3:c.730del	p.Ile244LeufsTer8	p.I244Lfs*8	ENST00000271452	NM_145697.2	242	acA/ac																																																																														
KDM5A	0	MSKCC	GRCh37	12	465599	465599	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	109	567	0	ENST00000399788.2:c.777A>T	p.Glu259Asp	p.E259D	ENST00000399788	NM_001042603.1	259	gaA/gaT																																																																														
GLI1	0	MSKCC	GRCh37	12	57858597	57858597	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1206	117	635	1	ENST00000228682.2:c.335C>A	p.Ser112Ter	p.S112*	ENST00000228682	NM_005269.2	112	tCg/tAg																																																																														
FLT1	0	MSKCC	GRCh37	13	28882990	28882990	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	109	700	0	ENST00000282397.4:c.3710C>A	p.Ser1237Tyr	p.S1237Y	ENST00000282397	NM_002019.4	1237	tCc/tAc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59858219	59858219	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	146	493	0	ENST00000259008.2:c.1776G>T	p.Trp592Cys	p.W592C	ENST00000259008	NM_032043.2	592	tgG/tgT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248538	212248539	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	151	440	1	ENST00000342788.4:c.3728_3729delinsTT	p.Trp1243Phe	p.W1243F	ENST00000342788	NM_005235.2	1243	tGG/tTT																																																																														
EPHA3	0	MSKCC	GRCh37	3	89462302	89462302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	154	535	0	ENST00000336596.2:c.1774G>T	p.Gly592Cys	p.G592C	ENST00000336596	NM_005233.5	592	Ggt/Tgt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873092	134873092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	213	610	0	ENST00000398015.3:c.1396G>T	p.Asp466Tyr	p.D466Y	ENST00000398015	NM_004441.4	466	Gac/Tac																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55143626	55143626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	68	391	1	ENST00000257290.5:c.1858C>A	p.Pro620Thr	p.P620T	ENST00000257290	NM_006206.4	620	Cct/Act																																																																														
NSD1	0	MSKCC	GRCh37	5	176639041	176639139	+	inframe_deletion	In_Frame_Del	DEL	TTGAGGAACCACTGACAGAGCAAAATCATGCTGACTGCTTAGATTCAGCTGGGCCACGGTTAAATGTTTGTGATAAATCCAGTGCCAGCATTGGTGACA	TTGAGGAACCACTGACAGAGCAAAATCATGCTGACTGCTTAGATTCAGCTGGGCCACGGTTAAATGTTTGTGATAAATCCAGTGCCAGCATTGGTGACA	-			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	129	566	0	ENST00000439151.2:c.3642_3740del	p.Glu1216_Glu1248del	p.E1216_E1248del	ENST00000439151	NM_022455.4	1214	cTTGAGGAACCACTGACAGAGCAAAATCATGCTGACTGCTTAGATTCAGCTGGGCCACGGTTAAATGTTTGTGATAAATCCAGTGCCAGCATTGGTGACAtg/ctg																																																																														
FLT4	0	MSKCC	GRCh37	5	180053182	180053182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	195	690	1	ENST00000261937.6:c.1187C>A	p.Thr396Asn	p.T396N	ENST00000261937	NM_182925.4	396	aCc/aAc																																																																														
HGF	0	MSKCC	GRCh37	7	81388038	81388038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	239	626	0	ENST00000222390.5:c.337G>C	p.Gly113Arg	p.G113R	ENST00000222390	NM_000601.4	113	Ggc/Cgc																																																																														
AMER1	0	MSKCC	GRCh37	X	63410394	63410394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1241	166	657	0	ENST00000330258.3:c.2773C>A	p.Gln925Lys	p.Q925K	ENST00000330258	NM_152424.3	925	Cag/Aag																																																																														
NCOR1	0	MSKCC	GRCh37	17	16042434	16042434	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	91	671	1	ENST00000268712.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000268712	NM_006311.3	414	Cga/Tga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0017428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	154	247	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
TP53	0	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	123	680	1	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252988	36252990	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0017428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	82	552	1	ENST00000300305.3:c.372_374del	p.Pro125del	p.P125del	ENST00000300305		124	gtTCCa/gta																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	102	546	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	84	711	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ATM	0	MSKCC	GRCh37	11	108202231	108202231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	207	599	0	ENST00000278616.4:c.7576A>G	p.Arg2526Gly	p.R2526G	ENST00000278616	NM_000051.3	2526	Aga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	1201	606	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	203	531	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
YES1	0	MSKCC	GRCh37	18	743392	743392	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	129	409	0	ENST00000314574.4:c.748A>C	p.Lys250Gln	p.K250Q	ENST00000314574	NM_005433.3	250	Aag/Cag																																																																														
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	209	643	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15292385	15292385	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	116	411	0	ENST00000263388.2:c.2792+2T>G		p.X931_splice	ENST00000263388	NM_000435.2	931																																																																															
HGF	0	MSKCC	GRCh37	7	81399215	81399215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	185	494	1	ENST00000222390.5:c.73G>T	p.Ala25Ser	p.A25S	ENST00000222390	NM_000601.4	25	Gcc/Tcc																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20159743	20159743	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	185	433	0	ENST00000379607.5:c.16G>A	p.Gly6Ser	p.G6S	ENST00000379607	NM_001412.3	6	Ggt/Agt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112347	115112347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	67	142	0	ENST00000257566.3:c.1393G>A	p.Ala465Thr	p.A465T	ENST00000257566	NM_016569.3	465	Gcc/Acc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0017437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	245	497	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	60	301	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
MGA	0	MSKCC	GRCh37	15	41962039	41962039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	161	505	0	ENST00000219905.7:c.947C>T	p.Thr316Ile	p.T316I	ENST00000219905	NM_001164273.1	316	aCa/aTa																																																																														
FAT1	0	MSKCC	GRCh37	4	187509786	187509786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142057401		P-0017441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	27	174	0	ENST00000441802.2:c.13727C>T	p.Thr4576Met	p.T4576M	ENST00000441802	NM_005245.3	4576	aCg/aTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212587117	212587117	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	37	225	0	ENST00000342788.4:c.883+1G>A		p.X295_splice	ENST00000342788	NM_005235.2	295																																																																															
CREBBP	0	MSKCC	GRCh37	16	3779620	3779620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	262	629	0	ENST00000262367.5:c.5428C>T	p.Arg1810Cys	p.R1810C	ENST00000262367	NM_004380.2	1810	Cgc/Tgc																																																																														
TET2	0	MSKCC	GRCh37	4	106157975	106157986	+	inframe_deletion	In_Frame_Del	DEL	AGCAAGAACAGC	AGCAAGAACAGC	-			P-0017442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	172	429	0	ENST00000380013.4:c.2881_2892del	p.Glu961_Gln964del	p.E961_Q964del	ENST00000380013	NM_001127208.2	959	aAGCAAGAACAGCag/aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89690812	89690816	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAC	AAGAC	-			P-0017443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	108	365	0	ENST00000371953.3:c.220_224del	p.Arg74LeufsTer2	p.R74Lfs*2	ENST00000371953	NM_000314.4	73	gaAAGACat/gaat																																																																														
MET	0	MSKCC	GRCh37	7	116411862	116411898	+	splice_region_variant,intron_variant	Splice_Region	DEL	TAGCCGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTT	TAGCCGTCTTTAACAAGCTCTTTCTTTCTCTCTGTTT	-			P-0017443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	388	702	0	ENST00000397752.3:c.2888-39_2888-3del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
TNFRSF14	0	MSKCC	GRCh37	1	2489803	2489803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	220	501	2	ENST00000355716.4:c.200G>T	p.Cys67Phe	p.C67F	ENST00000355716	NM_003820.2	67	tGc/tTc																																																																														
SESN2	0	MSKCC	GRCh37	1	28598357	28598357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	278	593	0	ENST00000253063.3:c.329C>G	p.Ser110Cys	p.S110C	ENST00000253063	NM_031459.4	110	tCc/tGc																																																																														
FGF4	0	MSKCC	GRCh37	11	69588791	69588791	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	35	543	0	ENST00000168712.1:c.444+1G>A		p.X148_splice	ENST00000168712	NM_002007.2	148																																																																															
RB1	0	MSKCC	GRCh37	13	48951156	48951156	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	276	434	1	ENST00000267163.4:c.1318G>T	p.Glu440Ter	p.E440*	ENST00000267163	NM_000321.2	440	Gaa/Taa																																																																														
RAD51D	0	MSKCC	GRCh37	17	33428220	33428220	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	137	348	0	ENST00000335858.7:c.567G>T	p.Gln189His	p.Q189H	ENST00000335858	NM_133629.2	189	caG/caT																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602840	10602840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	353	789	0	ENST00000171111.5:c.738C>G	p.Phe246Leu	p.F246L	ENST00000171111	NM_203500.1	246	ttC/ttG																																																																														
KDM6A	0	MSKCC	GRCh37	X	44732851	44732851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	226	256	0	ENST00000377967.4:c.54C>G	p.Phe18Leu	p.F18L	ENST00000377967	NM_021140.2	18	ttC/ttG																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426058	49426058	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	278	526	0	ENST00000301067.7:c.12430C>T	p.Gln4144Ter	p.Q4144*	ENST00000301067	NM_003482.3	4144	Cag/Tag																																																																														
BAP1	0	MSKCC	GRCh37	3	52437604	52437605	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0017445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	50	368	0	ENST00000460680.1:c.1556_1557del	p.Pro519LeufsTer17	p.P519Lfs*17	ENST00000460680	NM_004656.3	519	cCC/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0017446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	209	578	1	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
NF1	0	MSKCC	GRCh37	17	29685515	29685516	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	217	370	0	ENST00000358273.4:c.7989dup	p.Lys2664Ter	p.K2664*	ENST00000358273	NM_001042492.2	2663	tct/tcTt																																																																														
SOX9	0	MSKCC	GRCh37	17	70119840	70119853	+	frameshift_variant	Frame_Shift_Del	DEL	ACGTCATCTCCAAC	ACGTCATCTCCAAC	-			P-0017446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	301	573	0	ENST00000245479.2:c.843_856del	p.Val282ArgfsTer9	p.V282Rfs*9	ENST00000245479	NM_000346.3	281	gACGTCATCTCCAAC/g																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729908	30729908	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	33	386	0	ENST00000359013.4:c.1504A>T	p.Lys502Ter	p.K502*	ENST00000359013	NM_001024847.2	502	Aag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	183	501	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112389	115112389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	66	336	0	ENST00000257566.3:c.1351G>A	p.Ala451Thr	p.A451T	ENST00000257566	NM_016569.3	451	Gcg/Acg																																																																														
GNAS	0	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	1561	423	1	ENST00000371085.3:c.602G>T	p.Arg201Leu	p.R201L	ENST00000371085	NM_000516.4	201	cGt/cTt																																																																														
DDR2	0	MSKCC	GRCh37	1	162688924	162688924	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	220	413	0	ENST00000367921.3:c.71A>T	p.Gln24Leu	p.Q24L	ENST00000367921	NM_006182.2	24	cAg/cTg																																																																														
PALB2	0	MSKCC	GRCh37	16	23640525	23640525	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	193	474	1	ENST00000261584.4:c.2586G>T	p.Lys862Asn	p.K862N	ENST00000261584	NM_024675.3	862	aaG/aaT																																																																														
BRD4	0	MSKCC	GRCh37	19	15353737	15353737	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	197	552	0	ENST00000263377.2:c.3143A>C	p.His1048Pro	p.H1048P	ENST00000263377	NM_058243.2	1048	cAc/cCc																																																																														
ALK	0	MSKCC	GRCh37	2	29432674	29432674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	89	490	0	ENST00000389048.3:c.3814G>A	p.Gly1272Arg	p.G1272R	ENST00000389048	NM_004304.4	1272	Ggg/Agg																																																																														
BAP1	0	MSKCC	GRCh37	3	52436360	52436360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	120	392	0	ENST00000460680.1:c.2134C>T	p.Gln712Ter	p.Q712*	ENST00000460680	NM_004656.3	712	Cag/Tag																																																																														
KDR	0	MSKCC	GRCh37	4	55953788	55953788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	82	463	0	ENST00000263923.4:c.3648C>A	p.Asn1216Lys	p.N1216K	ENST00000263923	NM_002253.2	1216	aaC/aaA																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945094	151945096	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	70	615	0	ENST00000262189.6:c.2423_2425del	p.Ala808del	p.A808del	ENST00000262189	NM_170606.2	808	gCTGga/gga																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123480595	123480595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	166	342	0	ENST00000371139.4:c.103G>T	p.Glu35Ter	p.E35*	ENST00000371139	NM_001114937.2	35	Gag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	168	514	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	198	441	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																														
RET	0	MSKCC	GRCh37	10	43607568	43607568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	87	466	1	ENST00000355710.3:c.1544G>T	p.Cys515Phe	p.C515F	ENST00000355710	NM_020975.4	515	tGc/tTc																																																																														
RNF43	0	MSKCC	GRCh37	17	56492938	56492938	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	72	164	0	ENST00000407977.2:c.1A>T	p.Met1?	p.M1?	ENST00000407977		1	Atg/Ttg																																																																														
SDHA	0	MSKCC	GRCh37	5	223598	223598	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	35	211	0	ENST00000264932.6:c.65G>A	p.Trp22Ter	p.W22*	ENST00000264932	NM_004168.2	22	tGg/tAg																																																																														
SDHA	0	MSKCC	GRCh37	5	223618	223618	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	52	343	0	ENST00000264932.6:c.85G>T	p.Gly29Ter	p.G29*	ENST00000264932	NM_004168.2	29	Gga/Tga																																																																														
SDHA	0	MSKCC	GRCh37	5	223645	223645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	69	493	0	ENST00000264932.6:c.112G>A	p.Asp38Asn	p.D38N	ENST00000264932	NM_004168.2	38	Gat/Aat																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528133	157528133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	71	404	0	ENST00000346085.5:c.5858G>A	p.Arg1953His	p.R1953H	ENST00000346085	NM_020732.3	1953	cGt/cAt																																																																														
SOX17	0	MSKCC	GRCh37	8	55372203	55372203	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	59	283	0	ENST00000297316.4:c.893G>C	p.Gly298Ala	p.G298A	ENST00000297316	NM_022454.3	298	gGc/gCc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372514	55372514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	175	684	1	ENST00000297316.4:c.1204G>A	p.Ala402Thr	p.A402T	ENST00000297316	NM_022454.3	402	Gcc/Acc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	175	491	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981253	201981253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	122	496	1	ENST00000359651.3:c.332G>A	p.Arg111His	p.R111H	ENST00000359651		111	cGt/cAt																																																																														
ATM	0	MSKCC	GRCh37	11	108160452	108160452	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	195	455	0	ENST00000278616.4:c.4360A>T	p.Lys1454Ter	p.K1454*	ENST00000278616	NM_000051.3	1454	Aaa/Taa																																																																														
BRD4	0	MSKCC	GRCh37	19	15366173	15366173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	94	462	1	ENST00000263377.2:c.1982C>T	p.Pro661Leu	p.P661L	ENST00000263377	NM_058243.2	661	cCg/cTg																																																																														
PPARG	0	MSKCC	GRCh37	3	12421239	12421239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	111	484	1	ENST00000287820.6:c.119C>T	p.Pro40Leu	p.P40L	ENST00000287820	NM_015869.4	40	cCc/cTc																																																																														
PTP4A1	0	MSKCC	GRCh37	6	64288876	64288876	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1249	288	421	0	ENST00000370651.3:c.272A>G	p.Lys91Arg	p.K91R	ENST00000370651	NM_003463.4	91	aAg/aGg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106520111	106520111	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	86	229	0	ENST00000359195.3:c.2538+1G>A		p.X846_splice	ENST00000359195	NM_002649.2	846																																																																															
PTPRD	0	MSKCC	GRCh37	9	8528650	8528650	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	81	334	0	ENST00000356435.5:c.482A>T	p.Lys161Ile	p.K161I	ENST00000356435		161	aAa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	429	598	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	104	305	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	184	459	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	335	552	2	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																														
ALK	0	MSKCC	GRCh37	2	29498078	29498078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	43	449	0	ENST00000389048.3:c.1928A>G	p.Lys643Arg	p.K643R	ENST00000389048	NM_004304.4	643	aAg/aGg																																																																														
AMER1	0	MSKCC	GRCh37	X	63410609	63410609	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	31	283	0	ENST00000330258.3:c.2558A>C	p.Asn853Thr	p.N853T	ENST00000330258	NM_152424.3	853	aAc/aCc																																																																														
GATA3	0	MSKCC	GRCh37	10	8106034	8106034	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	59	438	0	ENST00000346208.3:c.854A>G	p.Asn285Ser	p.N285S	ENST00000346208		285	aAc/aGc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43762147	43762159	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGTGGACTCAG	ACAGTGGACTCAG	-			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	206	609	0	ENST00000382044.4:c.1286_1298del	p.Pro429HisfsTer58	p.P429Hfs*58	ENST00000382044	NM_001141980.1	429	cCTGAGTCCACTGTa/ca																																																																														
RAD51C	0	MSKCC	GRCh37	17	56801442	56801442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	247	617	0	ENST00000337432.4:c.946C>A	p.His316Asn	p.H316N	ENST00000337432	NM_058216.2	316	Cat/Aat																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573585	48573585	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	187	469	0	ENST00000342988.3:c.169T>G	p.Leu57Val	p.L57V	ENST00000342988	NM_005359.5	57	Tta/Gta																																																																														
ESR1	0	MSKCC	GRCh37	6	152129102	152129102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	67	596	0	ENST00000206249.3:c.55C>G	p.Gln19Glu	p.Q19E	ENST00000206249	NM_000125.3	19	Caa/Gaa																																																																														
AR	0	MSKCC	GRCh37	X	66766030	66766030	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	48	345	0	ENST00000374690.3:c.1042T>C	p.Tyr348His	p.Y348H	ENST00000374690	NM_000044.3	348	Tac/Cac																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1335	43	639	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1187	310	629	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																														
SESN3	0	MSKCC	GRCh37	11	94910994	94910994	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	498	560	0	ENST00000536441.1:c.1136T>C	p.Phe379Ser	p.F379S	ENST00000536441	NM_144665.3	379	tTt/tCt																																																																														
TSC2	0	MSKCC	GRCh37	16	2122849	2122849	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	28	424	0	ENST00000219476.3:c.2221-1G>A		p.X741_splice	ENST00000219476	NM_000548.3	741																																																																															
TSC2	0	MSKCC	GRCh37	16	2131595	2131595	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A	rs200739533		P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	48	463	0	ENST00000219476.3:c.3611-1G>A		p.X1204_splice	ENST00000219476	NM_000548.3	1204																																																																															
SMAD4	0	MSKCC	GRCh37	18	48581348	48581348	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	372	422	0	ENST00000342988.3:c.653del	p.Pro218LeufsTer23	p.P218Lfs*23	ENST00000342988	NM_005359.5	218	Cct/ct																																																																														
DAXX	0	MSKCC	GRCh37	6	33286552	33286552	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	406	385	0	ENST00000374542.5:c.2191G>T	p.Glu731Ter	p.E731*	ENST00000374542	NM_001141970.1	731	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	699	689	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TET2	0	MSKCC	GRCh37	4	106156981	106156981	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	237	528	2	ENST00000380013.4:c.1882G>T	p.Glu628Ter	p.E628*	ENST00000380013	NM_001127208.2	628	Gag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141497	11141498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	200	629	0	ENST00000344626.4:c.3480dup	p.Leu1161AlafsTer15	p.L1161Afs*15	ENST00000344626	NM_003072.3	1158	-/G																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21994138	21994138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	162	462	0	ENST00000361570.3:c.316G>A	p.Gly106Ser	p.G106S	ENST00000361570	NM_058195.3	106	Ggt/Agt																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21994138	21994138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	162	462	0	ENST00000361570.3:c.316G>A	p.Gly106Ser	p.G106S	ENST00000361570	NM_058195.3	106	Ggt/Agt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9781816	9781841	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGCTCCGAGATGCACGTGCCGTCGG	CAGCTCCGAGATGCACGTGCCGTCGG	-			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	96	514	0	ENST00000377346.4:c.1956-3_1978del		p.X652_splice	ENST00000377346	NM_005026.3	652																																																																															
ARID2	0	MSKCC	GRCh37	12	46231153	46231153	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	108	377	0	ENST00000334344.6:c.1073C>G	p.Thr358Ser	p.T358S	ENST00000334344	NM_152641.2	358	aCt/aGt																																																																														
FLT1	0	MSKCC	GRCh37	13	29008313	29008313	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	153	331	0	ENST00000282397.4:c.558G>T	p.Trp186Cys	p.W186C	ENST00000282397	NM_002019.4	186	tgG/tgT																																																																														
BRCA2	0	MSKCC	GRCh37	13	32899264	32899264	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	92	428	1	ENST00000380152.3:c.368A>T	p.Lys123Ile	p.K123I	ENST00000380152		123	aAa/aTa																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281744	49281744	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	251	675	0	ENST00000282018.3:c.791A>G	p.His264Arg	p.H264R	ENST00000282018	NM_020377.2	264	cAc/cGc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576129	88576129	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	89	536	1	ENST00000360948.2:c.1544A>T	p.Gln515Leu	p.Q515L	ENST00000360948	NM_001012338.2	515	cAg/cTg																																																																														
CDK12	0	MSKCC	GRCh37	17	37673767	37673767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1243	79	696	2	ENST00000447079.4:c.2921C>T	p.Pro974Leu	p.P974L	ENST00000447079	NM_015083.1	974	cCg/cTg																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740509	58740509	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	288	582	0	ENST00000305921.3:c.1414G>T	p.Glu472Ter	p.E472*	ENST00000305921	NM_003620.3	472	Gaa/Taa																																																																														
STK11	0	MSKCC	GRCh37	19	1220611	1220611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	243	557	0	ENST00000326873.7:c.629del	p.Cys210SerfsTer77	p.C210Sfs*77	ENST00000326873	NM_000455.4	210	tGc/tc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19261495	19261496	+	missense_variant	Missense_Mutation	DNP	CG	CG	GA			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	217	555	1	ENST00000162023.5:c.49_50delinsTC	p.Arg17Ser	p.R17S	ENST00000162023		17	CGg/TCg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133613	55133613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	178	472	0	ENST00000257290.5:c.917C>A	p.Thr306Asn	p.T306N	ENST00000257290	NM_006206.4	306	aCt/aAt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280161	66280162	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	94	217	1	ENST00000273854.3:c.1528-1_1528delinsTT		p.X510_splice	ENST00000273854	NM_004439.5	510																																																																															
PARK2	0	MSKCC	GRCh37	6	162683691	162683691	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	66	458	0	ENST00000366898.1:c.278del	p.Gly93GlufsTer10	p.G93Efs*10	ENST00000366898	NM_004562.2	93	gGa/ga																																																																														
RIT1	0	MSKCC	GRCh37	1	155874263	155874263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	156	527	0	ENST00000368323.3:c.268A>G	p.Met90Val	p.M90V	ENST00000368323	NM_006912.5	90	Atg/Gtg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602583	10602583	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	124	422	0	ENST00000171111.5:c.995G>T	p.Gly332Val	p.G332V	ENST00000171111	NM_203500.1	332	gGc/gTc																																																																														
STK11	0	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	107	417	0	ENST00000326873.7:c.924G>C	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgC																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11135023	11135047	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGCGACATGTCTGCGCTGCAGCG	AGTGCGACATGTCTGCGCTGCAGCG	-			P-0017469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	121	468	0	ENST00000344626.4:c.2995_3019del	p.Asp999SerfsTer12	p.D999Sfs*12	ENST00000344626	NM_003072.3	997	aAGTGCGACATGTCTGCGCTGCAGCGa/aa																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2494659	2494659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	105	558	0	ENST00000355716.4:c.799G>T	p.Val267Leu	p.V267L	ENST00000355716	NM_003820.2	267	Gtg/Ttg																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	584	403	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16062075	16062075	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0017470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	393	299	0	ENST00000268712.3:c.731G>C	p.Arg244Pro	p.R244P	ENST00000268712	NM_006311.3	244	cGg/cCg																																																																														
YES1	0	MSKCC	GRCh37	18	736808	736808	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	325	456	0	ENST00000314574.4:c.1291G>T	p.Gly431Cys	p.G431C	ENST00000314574	NM_005433.3	431	Ggt/Tgt																																																																														
CTLA4	0	MSKCC	GRCh37	2	204735653	204735653	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	123	249	0	ENST00000302823.3:c.454A>C	p.Ile152Leu	p.I152L	ENST00000302823	NM_005214.4	152	Att/Ctt																																																																														
CARD11	0	MSKCC	GRCh37	7	2959143	2959143	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	219	406	1	ENST00000396946.4:c.2373C>A	p.Cys791Ter	p.C791*	ENST00000396946	NM_032415.4	791	tgC/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	197	418	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	361	282	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	25	431	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	233	422	1	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916836	178916836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	103	596	0	ENST00000263967.3:c.223C>G	p.Gln75Glu	p.Q75E	ENST00000263967	NM_006218.2	75	Caa/Gaa																																																																														
RNF43	0	MSKCC	GRCh37	17	56434943	56434943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	215	448	0	ENST00000407977.2:c.2194C>T	p.Arg732Cys	p.R732C	ENST00000407977		732	Cgc/Tgc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952142	178952142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	153	332	0	ENST00000263967.3:c.3197C>T	p.Ala1066Val	p.A1066V	ENST00000263967	NM_006218.2	1066	gCa/gTa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178002	56178002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	186	437	0	ENST00000399503.3:c.2975C>G	p.Ser992Cys	p.S992C	ENST00000399503	NM_005921.1	992	tCt/tGt																																																																														
SH2B3	0	MSKCC	GRCh37	12	111855996	111855996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	180	378	0	ENST00000341259.2:c.47C>T	p.Ser16Leu	p.S16L	ENST00000341259	NM_005475.2	16	tCa/tTa																																																																														
TET1	0	MSKCC	GRCh37	10	70446420	70446420	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	118	561	0	ENST00000373644.4:c.5360C>G	p.Ser1787Ter	p.S1787*	ENST00000373644	NM_030625.2	1787	tCa/tGa																																																																														
FGF3	0	MSKCC	GRCh37	11	69625349	69625349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	249	447	0	ENST00000334134.2:c.444C>A	p.Ser148Arg	p.S148R	ENST00000334134	NM_005247.2	148	agC/agA																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376124	118376124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	96	482	0	ENST00000534358.1:c.9517C>G	p.Gln3173Glu	p.Q3173E	ENST00000534358	NM_005933.3	3173	Caa/Gaa																																																																														
RB1	0	MSKCC	GRCh37	13	49037873	49037874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	135	376	0	ENST00000267163.4:c.2117_2118dup	p.Ser707ValfsTer9	p.S707Vfs*9	ENST00000267163	NM_000321.2	705	atg/aTGtg																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792449	33792449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	311	546	0	ENST00000498907.2:c.872G>C	p.Arg291Pro	p.R291P	ENST00000498907	NM_004364.3	291	cGc/cCc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469490	25469490	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	105	444	0	ENST00000264709.3:c.1278A>C	p.Glu426Asp	p.E426D	ENST00000264709	NM_175629.2	426	gaA/gaC																																																																														
XPO1	0	MSKCC	GRCh37	2	61720152	61720152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	81	504	0	ENST00000401558.2:c.1282G>C	p.Glu428Gln	p.E428Q	ENST00000401558	NM_003400.3	428	Gag/Cag																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794506	242794506	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	118	447	0	ENST00000334409.5:c.437-1G>T		p.X146_splice	ENST00000334409	NM_005018.2	146																																																																															
EP300	0	MSKCC	GRCh37	22	41526001	41526001	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	172	434	0	ENST00000263253.7:c.1276C>G	p.Gln426Glu	p.Q426E	ENST00000263253	NM_001429.3	426	Caa/Gaa																																																																														
EP300	0	MSKCC	GRCh37	22	41531867	41531867	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	209	523	0	ENST00000263253.7:c.1579C>G	p.Leu527Val	p.L527V	ENST00000263253	NM_001429.3	527	Ctt/Gtt																																																																														
EP300	0	MSKCC	GRCh37	22	41556674	41556674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	122	441	0	ENST00000263253.7:c.3619G>A	p.Glu1207Lys	p.E1207K	ENST00000263253	NM_001429.3	1207	Gag/Aag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499444	89499444	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	134	429	0	ENST00000336596.2:c.2614G>C	p.Glu872Gln	p.E872Q	ENST00000336596	NM_005233.5	872	Gag/Cag																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67569835	67569835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	47	249	0	ENST00000274335.5:c.496G>A	p.Asp166Asn	p.D166N	ENST00000274335		166	Gat/Aat																																																																														
E2F3	0	MSKCC	GRCh37	6	20490581	20490581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	201	411	1	ENST00000346618.3:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000346618	NM_001949.4	440	Gag/Aag																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652324	36652324	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	156	281	0	ENST00000244741.5:c.445+1G>T		p.X149_splice	ENST00000244741	NM_000389.4	149																																																																															
TSC1	0	MSKCC	GRCh37	9	135804167	135804167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	155	356	0	ENST00000298552.3:c.93G>C	p.Glu31Asp	p.E31D	ENST00000298552	NM_001162426.1	31	gaG/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	34	419	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100999	41100999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	43	285	2	ENST00000373198.4:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000373198	NM_133170.3	453	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0017476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	45	344	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	17	442	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692922	89692922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	36	428	0	ENST00000371953.3:c.406T>C	p.Cys136Arg	p.C136R	ENST00000371953	NM_000314.4	136	Tgt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0017481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	155	417	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774973	73774973	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	23	190	0	ENST00000254810.4:c.200C>G	p.Pro67Arg	p.P67R	ENST00000254810	NM_005324.3	67	cCc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	83	395	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	79	357	2	ENST00000322088.6:c.767C>A	p.Ser256Tyr	p.S256Y	ENST00000322088	NM_014225.5	256	tCc/tAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	214	388	0	ENST00000263967.3:c.1625A>T	p.Glu542Val	p.E542V	ENST00000263967	NM_006218.2	542	gAa/gTa																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675208	40675208	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	60	420	0	ENST00000249776.8:c.172A>G	p.Ser58Gly	p.S58G	ENST00000249776	NM_033286.3	58	Agc/Ggc																																																																														
TP53	0	MSKCC	GRCh37	17	7576871	7576872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	55	473	0	ENST00000269305.4:c.974dup	p.Glu326ArgfsTer11	p.E326Rfs*11	ENST00000269305	NM_001126112.2	325	gga/ggGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	156	468	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	125	416	2	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099979	27099980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	188	567	0	ENST00000324856.7:c.3859dup	p.Arg1287LysfsTer11	p.R1287Kfs*11	ENST00000324856	NM_006015.4	1286	-/A																																																																														
DOT1L	0	MSKCC	GRCh37	19	2214573	2214573	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	160	497	0	ENST00000398665.3:c.1901A>T	p.Gln634Leu	p.Q634L	ENST00000398665	NM_032482.2	634	cAg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0017487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	205	602	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0017487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	753	857	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120461979	120461979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	32	337	0	ENST00000256646.2:c.5737C>A	p.Pro1913Thr	p.P1913T	ENST00000256646	NM_024408.3	1913	Cca/Aca																																																																														
TP53	0	MSKCC	GRCh37	17	7579717	7579717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	478	695	0	ENST00000269305.4:c.79C>T	p.Pro27Ser	p.P27S	ENST00000269305	NM_001126112.2	27	Cct/Tct																																																																														
NF1	0	MSKCC	GRCh37	17	29550464	29550464	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	77	249	0	ENST00000358273.4:c.1724C>T	p.Ser575Leu	p.S575L	ENST00000358273	NM_001042492.2	575	tCa/tTa																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22006021	22006021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	53	642	0	ENST00000276925.6:c.382G>A	p.Val128Ile	p.V128I	ENST00000276925	NM_004936.3	128	Gtt/Att																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	692	436	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
STK11	0	MSKCC	GRCh37	19	1207078	1207078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	837	561	1	ENST00000326873.7:c.166G>T	p.Gly56Trp	p.G56W	ENST00000326873	NM_000455.4	56	Ggg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	1405	563	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
CASP8	0	MSKCC	GRCh37	2	202131457	202131459	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	297	528	0	ENST00000358485.4:c.430_432del	p.Glu144del	p.E144del	ENST00000358485	NM_001080125.1	142	aAGGag/aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16257158	16257158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	133	557	1	ENST00000375759.3:c.4423C>T	p.Arg1475Ter	p.R1475*	ENST00000375759	NM_015001.2	1475	Cga/Tga																																																																														
SLX4	0	MSKCC	GRCh37	16	3640217	3640217	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1687	205	751	0	ENST00000294008.3:c.3422C>G	p.Ser1141Cys	p.S1141C	ENST00000294008	NM_032444.2	1141	tCt/tGt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10291061	10291061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	194	438	0	ENST00000340748.4:c.410C>A	p.Thr137Lys	p.T137K	ENST00000340748		137	aCg/aAg																																																																														
ERF	0	MSKCC	GRCh37	19	42753309	42753309	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	532	753	0	ENST00000222329.4:c.955C>G	p.Gln319Glu	p.Q319E	ENST00000222329	NM_006494.2	319	Caa/Gaa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99136602	99136602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	79	365	0	ENST00000074304.5:c.91G>C	p.Gly31Arg	p.G31R	ENST00000074304	NM_001134224.1	31	Ggc/Cgc																																																																														
CUL3	0	MSKCC	GRCh37	2	225376082	225376082	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	413	478	0	ENST00000264414.4:c.872del	p.Gly291GlufsTer20	p.G291Efs*20	ENST00000264414	NM_003590.4	291	gGa/ga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40828020	40828020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	80	262	0	ENST00000373198.4:c.2408C>G	p.Ala803Gly	p.A803G	ENST00000373198	NM_133170.3	803	gCc/gGc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42866466	42866466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1426	183	736	1	ENST00000398585.3:c.166G>T	p.Gly56Ter	p.G56*	ENST00000398585	NM_001135099.1	56	Gga/Tga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8340390	8340391	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0017493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	260	328	0	ENST00000356435.5:c.5205_5206del	p.His1735GlnfsTer13	p.H1735Qfs*13	ENST00000356435		1735	caCAat/caat																																																																														
SPOP	0	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	71	622	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938432	44938442	+	frameshift_variant	Frame_Shift_Del	DEL	AATGAACATAT	AATGAACATAT	-			P-0017494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	48	323	0	ENST00000377967.4:c.2980_2990del	p.Asn994GlyfsTer13	p.N994Gfs*13	ENST00000377967	NM_021140.2	994	AATGAACATATg/g																																																																														
PTEN	0	MSKCC	GRCh37	10	89692918	89692918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	57	671	0	ENST00000371953.3:c.402G>A	p.Met134Ile	p.M134I	ENST00000371953	NM_000314.4	134	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	148	518	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	102	582	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PLCG2	0	MSKCC	GRCh37	16	81925111	81925111	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	39	387	0	ENST00000359376.3:c.902T>C	p.Ile301Thr	p.I301T	ENST00000359376	NM_002661.3	301	aTc/aCc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5221050	5221050	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	30	315	0	ENST00000357368.4:c.3416T>A	p.Met1139Lys	p.M1139K	ENST00000357368	NM_002850.3	1139	aTg/aAg																																																																														
MST1	0	MSKCC	GRCh37	3	49725049	49725049	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	38	460	0	ENST00000449682.2:c.295C>T	p.Gln99Ter	p.Q99*	ENST00000449682	NM_020998.3	99	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	39	530	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	63	536	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499449	89499449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	46	397	2	ENST00000336596.2:c.2619G>T	p.Gln873His	p.Q873H	ENST00000336596	NM_005233.5	873	caG/caT																																																																														
RB1	0	MSKCC	GRCh37	13	49037972	49037972	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	35	333	0	ENST00000267163.4:c.2211+1G>A		p.X737_splice	ENST00000267163	NM_000321.2	737																																																																															
WT1	0	MSKCC	GRCh37	11	32439182	32439182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	32	463	1	ENST00000332351.3:c.891G>T	p.Met297Ile	p.M297I	ENST00000332351	NM_024426.4	297	atG/atT																																																																														
CDC73	0	MSKCC	GRCh37	1	193119474	193119474	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	55	386	0	ENST00000367435.3:c.869A>G	p.Tyr290Cys	p.Y290C	ENST00000367435	NM_024529.4	290	tAt/tGt																																																																														
RET	0	MSKCC	GRCh37	10	43604494	43604495	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	50	520	4	ENST00000355710.3:c.1079_1080delinsTT	p.Arg360Leu	p.R360L	ENST00000355710	NM_020975.4	360	cGG/cTT																																																																														
GLI1	0	MSKCC	GRCh37	12	57865260	57865260	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	43	524	0	ENST00000228682.2:c.2741del	p.Gly914AlafsTer32	p.G914Afs*32	ENST00000228682	NM_005269.2	913	Ggg/gg																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281716	49281716	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	66	639	0	ENST00000282018.3:c.763A>G	p.Ile255Val	p.I255V	ENST00000282018	NM_020377.2	255	Atc/Gtc																																																																														
ALK	0	MSKCC	GRCh37	2	30143422	30143422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	25	346	1	ENST00000389048.3:c.104G>T	p.Gly35Val	p.G35V	ENST00000389048	NM_004304.4	35	gGg/gTg																																																																														
GATA2	0	MSKCC	GRCh37	3	128200700	128200700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	50	513	0	ENST00000341105.2:c.1105G>T	p.Val369Phe	p.V369F	ENST00000341105	NM_032638.4	369	Gtc/Ttc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372220	55372220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	42	394	0	ENST00000297316.4:c.910G>T	p.Gly304Trp	p.G304W	ENST00000297316	NM_022454.3	304	Ggg/Tgg																																																																														
PREX2	0	MSKCC	GRCh37	8	69032449	69032449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	40	573	1	ENST00000288368.4:c.3523C>G	p.Leu1175Val	p.L1175V	ENST00000288368	NM_024870.2	1175	Ctc/Gtc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222954	53222954	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0017500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	74	653	0	ENST00000375401.3:c.4117+1G>T		p.X1373_splice	ENST00000375401	NM_004187.3	1373																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	160	350	0				ENST00000310581	NM_198253.2																																																																																
NF2	0	MSKCC	GRCh37	22	30032763	30032764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0017502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	124	317	0	ENST00000338641.4:c.140_141dup	p.Asp48LeufsTer76	p.D48Lfs*76	ENST00000338641	NM_000268.3	46	-/TT																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	89	320	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	5759	549	1	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	200	469	1	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	103	374	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821760	72821760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	107	384	0	ENST00000268489.5:c.10415C>T	p.Ala3472Val	p.A3472V	ENST00000268489	NM_006885.3	3472	gCg/gTg																																																																														
CIC	0	MSKCC	GRCh37	19	42794062	42794062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	62	472	1	ENST00000575354.2:c.1423G>A	p.Glu475Lys	p.E475K	ENST00000575354	NM_015125.3	475	Gag/Aag																																																																														
RNF43	0	MSKCC	GRCh37	17	56435396	56435400	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGC	GAGGC	AAGG			P-0017503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	191	442	1	ENST00000407977.2:c.1737_1741delinsCCTT	p.Arg579SerfsTer121	p.R579Sfs*121	ENST00000407977		579	agGCCTCct/agCCTTct																																																																														
DOT1L	0	MSKCC	GRCh37	19	2213965	2213965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	39	395	0	ENST00000398665.3:c.1777C>A	p.Arg593Ser	p.R593S	ENST00000398665	NM_032482.2	593	Cgc/Agc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144185	11144185	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	76	442	1	ENST00000344626.4:c.3766C>T	p.Gln1256Ter	p.Q1256*	ENST00000344626	NM_003072.3	1256	Cag/Tag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56183277	56183277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	90	380	0	ENST00000399503.3:c.4187C>T	p.Ala1396Val	p.A1396V	ENST00000399503	NM_005921.1	1396	gCa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	22	592	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937067	36937067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	202	409	3	ENST00000361632.4:c.1252C>T	p.Arg418Cys	p.R418C	ENST00000361632		418	Cgt/Tgt																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798438	45798445	+	frameshift_variant	Frame_Shift_Del	DEL	CCGAGCTC	CCGAGCTC	-			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	399	624	0	ENST00000372115.3:c.524_531delGAGCTCGG	p.Gly175GlufsTer61	p.G175Efs*61	ENST00000372115	NM_001048171.1	175	gGAGCTCGG/g																																																																														
CSDE1	0	MSKCC	GRCh37	1	115263314	115263314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	267	702	1	ENST00000438362.2:c.2036C>T	p.Pro679Leu	p.P679L	ENST00000438362	NM_001242891.1	679	cCa/cTa																																																																														
NUF2	0	MSKCC	GRCh37	1	163306558	163306558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	106	560	0	ENST00000271452.3:c.355C>T	p.Arg119Trp	p.R119W	ENST00000271452	NM_145697.2	119	Cgg/Tgg																																																																														
RET	0	MSKCC	GRCh37	10	43595944	43595944	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	519	678	0	ENST00000355710.3:c.111G>A	p.Trp37Ter	p.W37*	ENST00000355710	NM_020975.4	37	tgG/tgA																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852035	63852035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	198	496	0	ENST00000279873.7:c.2813C>T	p.Ser938Phe	p.S938F	ENST00000279873	NM_032199.2	938	tCc/tTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692910	89692910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	290	563	0	ENST00000371953.3:c.394G>T	p.Gly132Cys	p.G132C	ENST00000371953	NM_000314.4	132	Ggt/Tgt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375513	118375513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	223	329	0	ENST00000534358.1:c.8906C>T	p.Ser2969Phe	p.S2969F	ENST00000534358	NM_005933.3	2969	tCt/tTt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375723	118375723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	217	611	1	ENST00000534358.1:c.9116C>T	p.Ser3039Phe	p.S3039F	ENST00000534358	NM_005933.3	3039	tCc/tTc																																																																														
CBL	0	MSKCC	GRCh37	11	119148963	119148963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	176	529	0	ENST00000264033.4:c.1183C>T	p.Pro395Ser	p.P395S	ENST00000264033	NM_005188.3	395	Ccc/Tcc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18644479	18644479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	164	508	0	ENST00000266497.5:c.2657G>A	p.Gly886Glu	p.G886E	ENST00000266497		886	gGg/gAg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18719923	18719923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	156	650	0	ENST00000266497.5:c.3820C>T	p.His1274Tyr	p.H1274Y	ENST00000266497		1274	Cac/Tac																																																																														
PTPN11	0	MSKCC	GRCh37	12	112926257	112926257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	310	409	0	ENST00000351677.2:c.1390G>A	p.Gly464Ser	p.G464S	ENST00000351677	NM_002834.3	464	Ggc/Agc																																																																														
LATS2	0	MSKCC	GRCh37	13	21549248	21549248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	471	674	2	ENST00000382592.4:c.3028C>T	p.Pro1010Ser	p.P1010S	ENST00000382592	NM_014572.2	1010	Cct/Tct																																																																														
LATS2	0	MSKCC	GRCh37	13	21557682	21557683	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	376	661	5	ENST00000382592.4:c.2162_2163delCCinsTT	p.Ala721Val	p.A721V	ENST00000382592	NM_014572.2	721	gCC/gTT																																																																														
FLT3	0	MSKCC	GRCh37	13	28609752	28609752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	315	648	0	ENST00000241453.7:c.1477G>A	p.Gly493Arg	p.G493R	ENST00000241453	NM_004119.2	493	Gga/Aga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906633	32906633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	227	577	1	ENST00000380152.3:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000380152		340	Gaa/Aaa																																																																														
DIS3	0	MSKCC	GRCh37	13	73336095	73336095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	68	249	0	ENST00000377767.4:c.2308C>T	p.Pro770Ser	p.P770S	ENST00000377767	NM_014953.3	770	Cca/Tca																																																																														
RAD51	0	MSKCC	GRCh37	15	40993313	40993313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	276	487	0	ENST00000267868.3:c.139C>T	p.His47Tyr	p.H47Y	ENST00000267868	NM_002875.4	47	Cat/Tat																																																																														
MGA	0	MSKCC	GRCh37	15	42000313	42000313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	259	465	0	ENST00000219905.7:c.2332C>T	p.Pro778Ser	p.P778S	ENST00000219905	NM_001164273.1	778	Ccc/Tcc																																																																														
MGA	0	MSKCC	GRCh37	15	42019470	42019470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	303	701	1	ENST00000219905.7:c.3523C>T	p.Pro1175Ser	p.P1175S	ENST00000219905	NM_001164273.1	1175	Ccc/Tcc																																																																														
SLX4	0	MSKCC	GRCh37	16	3634861	3634861	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77021998		P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	319	535	2	ENST00000294008.3:c.4648C>T	p.Arg1550Trp	p.R1550W	ENST00000294008	NM_032444.2	1550	Cgg/Tgg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	230	420	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857529	9857529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	165	316	0	ENST00000330684.3:c.3872C>T	p.Ser1291Phe	p.S1291F	ENST00000330684	NM_001134407.1	1291	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577070	7577070	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	530	725	1	ENST00000269305.4:c.868delC	p.Arg290AlafsTer55	p.R290Afs*55	ENST00000269305	NM_001126112.2	290	Cgc/gc																																																																														
NF1	0	MSKCC	GRCh37	17	29528441	29528441	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	193	517	1	ENST00000358273.4:c.1198C>T	p.Gln400Ter	p.Q400*	ENST00000358273	NM_001042492.2	400	Cag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29654653	29654653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	140	376	2	ENST00000358273.4:c.5405C>T	p.Thr1802Ile	p.T1802I	ENST00000358273	NM_001042492.2	1802	aCc/aTc																																																																														
CDK12	0	MSKCC	GRCh37	17	37627263	37627263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	198	548	0	ENST00000447079.4:c.1178C>T	p.Ser393Phe	p.S393F	ENST00000447079	NM_015083.1	393	tCc/tTc																																																																														
CDK12	0	MSKCC	GRCh37	17	37681015	37681015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	416	586	0	ENST00000447079.4:c.3184C>T	p.Pro1062Ser	p.P1062S	ENST00000447079	NM_015083.1	1062	Cca/Tca																																																																														
RARA	0	MSKCC	GRCh37	17	38512438	38512438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	273	856	0	ENST00000254066.5:c.1349C>T	p.Pro450Leu	p.P450L	ENST00000254066	NM_000964.3	450	cCc/cTc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4117524	4117524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	208	243	0	ENST00000262948.5:c.196G>A	p.Glu66Lys	p.E66K	ENST00000262948	NM_030662.3	66	Gaa/Aaa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5243965	5243965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	314	416	1	ENST00000357368.4:c.1517C>T	p.Ser506Phe	p.S506F	ENST00000357368	NM_002850.3	506	tCc/tTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152077	11152077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	188	551	0	ENST00000344626.4:c.4265C>T	p.Ser1422Phe	p.S1422F	ENST00000344626	NM_003072.3	1422	tCc/tTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291830	15291830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	207	631	0	ENST00000263388.2:c.2936C>T	p.Ala979Val	p.A979V	ENST00000263388	NM_000435.2	979	gCc/gTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15297946	15297947	+	missense_variant	Missense_Mutation	DNP	AC	AC	GT			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	370	689	1	ENST00000263388.2:c.1809_1810invGT	p.Tyr604His	p.Y604H	ENST00000263388	NM_000435.2	603	aaGTac/aaACac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223357	36223358	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	463	970	1	ENST00000222270.7:c.5907_5908delCCinsTT	p.Pro1970Ser	p.P1970S	ENST00000222270	NM_014727.1	1969	ccCCct/ccTTct																																																																														
AXL	0	MSKCC	GRCh37	19	41763470	41763470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	344	544	2	ENST00000301178.4:c.2269G>A	p.Glu757Lys	p.E757K	ENST00000301178	NM_021913.4	757	Gag/Aag																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469167	25469167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	278	522	0	ENST00000264709.3:c.1291C>T	p.Pro431Ser	p.P431S	ENST00000264709	NM_175629.2	431	Ccc/Tcc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743956	40743956	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	239	353	0	ENST00000373198.4:c.3040-1G>A		p.X1014_splice	ENST00000373198	NM_133170.3	1014																																																																															
PTPRT	0	MSKCC	GRCh37	20	40790093	40790093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	118	453	0	ENST00000373198.4:c.2638C>T	p.Pro880Ser	p.P880S	ENST00000373198	NM_133170.3	880	Ccc/Tcc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306556	41306556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	287	556	1	ENST00000373198.4:c.1103G>A	p.Gly368Glu	p.G368E	ENST00000373198	NM_133170.3	368	gGg/gAg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306565	41306565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	310	572	0	ENST00000373198.4:c.1094C>T	p.Pro365Leu	p.P365L	ENST00000373198	NM_133170.3	365	cCa/cTa																																																																														
RHOA	0	MSKCC	GRCh37	3	49405884	49405884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	265	710	1	ENST00000418115.1:c.254C>T	p.Ser85Phe	p.S85F	ENST00000418115	NM_001664.2	85	tCc/tTc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89478288	89478288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	132	327	0	ENST00000336596.2:c.2107G>A	p.Glu703Lys	p.E703K	ENST00000336596	NM_005233.5	703	Gag/Aag																																																																														
GSK3B	0	MSKCC	GRCh37	3	119631640	119631640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	129	386	0	ENST00000316626.5:c.626G>C	p.Arg209Pro	p.R209P	ENST00000316626		209	cGa/cCa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936077	178936077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	158	481	0	ENST00000263967.3:c.1619T>G	p.Leu540Arg	p.L540R	ENST00000263967	NM_006218.2	540	cTc/cGc																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185198153	185198153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	368	589	1	ENST00000265026.3:c.2635G>A	p.Asp879Asn	p.D879N	ENST00000265026	NM_004721.4	879	Gac/Aac																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502391	186502391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	288	405	0	ENST00000323963.5:c.114G>A	p.Met38Ile	p.M38I	ENST00000323963		38	atG/atA																																																																														
TP63	0	MSKCC	GRCh37	3	189612176	189612176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	335	478	0	ENST00000264731.3:c.1928G>A	p.Arg643Gln	p.R643Q	ENST00000264731	NM_003722.4	643	cGa/cAa																																																																														
KDR	0	MSKCC	GRCh37	4	55953799	55953799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	297	610	0	ENST00000263923.4:c.3637C>T	p.His1213Tyr	p.H1213Y	ENST00000263923	NM_002253.2	1213	Cat/Tat																																																																														
TET2	0	MSKCC	GRCh37	4	106156345	106156345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	250	436	0	ENST00000380013.4:c.1246C>T	p.Pro416Ser	p.P416S	ENST00000380013	NM_001127208.2	416	Cct/Tct																																																																														
FAT1	0	MSKCC	GRCh37	4	187628202	187628202	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	657	662	0	ENST00000441802.2:c.2780T>A	p.Phe927Tyr	p.F927Y	ENST00000441802	NM_005245.3	927	tTt/tAt																																																																														
TERT	0	MSKCC	GRCh37	5	1260651	1260656	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTCC	TGTTCC	CGACG			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	330	638	2	ENST00000310581.5:c.2903_2908delGGAACAinsCGTCG	p.Arg968ThrfsTer13	p.R968Tfs*13	ENST00000310581	NM_198253.2	968	aGGAACAtg/aCGTCGtg																																																																														
TERT	0	MSKCC	GRCh37	5	1294208	1294208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	251	763	0	ENST00000310581.5:c.793C>T	p.Pro265Ser	p.P265S	ENST00000310581	NM_198253.2	265	Ccg/Tcg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	324	469	0				ENST00000310581	NM_198253.2																																																																																
MSH3	0	MSKCC	GRCh37	5	80021291	80021291	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	274	504	0	ENST00000265081.6:c.1360C>T	p.Arg454Ter	p.R454*	ENST00000265081	NM_002439.4	454	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112173762	112173762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	118	394	0	ENST00000257430.4:c.2471C>T	p.Pro824Leu	p.P824L	ENST00000257430	NM_000038.5	824	cCa/cTa																																																																														
APC	0	MSKCC	GRCh37	5	112173824	112173824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	124	385	1	ENST00000257430.4:c.2533C>T	p.Arg845Cys	p.R845C	ENST00000257430	NM_000038.5	845	Cgt/Tgt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523114	176523114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	408	732	3	ENST00000292408.4:c.1878G>A	p.Met626Ile	p.M626I	ENST00000292408	NM_213647.1	626	atG/atA																																																																														
E2F3	0	MSKCC	GRCh37	6	20481478	20481478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	320	368	1	ENST00000346618.3:c.547C>T	p.Leu183Phe	p.L183F	ENST00000346618	NM_001949.4	183	Ctt/Ttt																																																																														
STK19	0	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1828	322	865	1	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169902	32169902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	991	754	0	ENST00000375023.3:c.3706G>A	p.Glu1236Lys	p.E1236K	ENST00000375023	NM_004557.3	1236	Gaa/Aaa																																																																														
TAP2	0	MSKCC	GRCh37	6	32803450	32803450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1549	241	758	0	ENST00000374899.4:c.709G>A	p.Asp237Asn	p.D237N	ENST00000374899	NM_018833.2	237	Gac/Aac																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652125	36652125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs374965936		P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	180	466	1	ENST00000244741.5:c.247C>T	p.Arg83Trp	p.R83W	ENST00000244741	NM_000389.4	83	Cgg/Tgg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120336	94120336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	158	274	0	ENST00000369303.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000369303	NM_004440.3	239	Gag/Aag																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120360	94120360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	152	302	0	ENST00000369303.4:c.691C>T	p.Arg231Ter	p.R231*	ENST00000369303	NM_004440.3	231	Cga/Tga																																																																														
ROS1	0	MSKCC	GRCh37	6	117683852	117683852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	171	537	0	ENST00000368508.3:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000368508	NM_002944.2	1099	Gaa/Aaa																																																																														
ROS1	0	MSKCC	GRCh37	6	117717390	117717390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	290	525	0	ENST00000368508.3:c.817C>T	p.Pro273Ser	p.P273S	ENST00000368508	NM_002944.2	273	Cca/Tca																																																																														
EGFR	0	MSKCC	GRCh37	7	55270222	55270222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	379	662	0	ENST00000275493.2:c.3175C>T	p.Pro1059Ser	p.P1059S	ENST00000275493	NM_005228.3	1059	Ccc/Tcc																																																																														
HGF	0	MSKCC	GRCh37	7	81392170	81392170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	73	233	0	ENST00000222390.5:c.107G>A	p.Arg36Lys	p.R36K	ENST00000222390	NM_000601.4	36	aGa/aAa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508856	106508856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	134	385	1	ENST00000359195.3:c.850G>A	p.Glu284Lys	p.E284K	ENST00000359195	NM_002649.2	284	Gaa/Aaa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509236	106509236	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	344	636	0	ENST00000359195.3:c.1230G>A	p.Trp410Ter	p.W410*	ENST00000359195	NM_002649.2	410	tgG/tgA																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106523546	106523546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	257	473	0	ENST00000359195.3:c.2698G>A	p.Gly900Arg	p.G900R	ENST00000359195	NM_002649.2	900	Gga/Aga																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106545740	106545740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	223	593	1	ENST00000359195.3:c.3217G>A	p.Glu1073Lys	p.E1073K	ENST00000359195	NM_002649.2	1073	Gaa/Aaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151851484	151851484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	305	532	1	ENST00000262189.6:c.12007C>T	p.Pro4003Ser	p.P4003S	ENST00000262189	NM_170606.2	4003	Ccc/Tcc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70980485	70980485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	214	890	0	ENST00000276594.2:c.892G>A	p.Asp298Asn	p.D298N	ENST00000276594	NM_024504.3	298	Gac/Aac																																																																														
AGO2	0	MSKCC	GRCh37	8	141566014	141566014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	291	429	0	ENST00000220592.5:c.1250C>T	p.Ser417Phe	p.S417F	ENST00000220592	NM_012154.3	417	tCc/tTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521431	8521431	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	116	638	0	ENST00000356435.5:c.807G>A	p.Trp269Ter	p.W269*	ENST00000356435		269	tgG/tgA																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	305	442	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	305	442	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
SYK	0	MSKCC	GRCh37	9	93636980	93636980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	160	373	0	ENST00000375746.1:c.1030G>A	p.Asp344Asn	p.D344N	ENST00000375746	NM_001174167.1	344	Gac/Aac																																																																														
PPP6C	0	MSKCC	GRCh37	9	127912100	127912100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	255	374	0	ENST00000373547.4:c.770C>T	p.Ser257Phe	p.S257F	ENST00000373547	NM_002721.4	257	tCt/tTt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139417634	139417634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	495	781	0	ENST00000277541.6:c.410C>T	p.Ser137Leu	p.S137L	ENST00000277541	NM_017617.3	137	tCg/tTg																																																																														
BCOR	0	MSKCC	GRCh37	X	39932317	39932317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	541	408	0	ENST00000378444.4:c.2282G>A	p.Arg761Gln	p.R761Q	ENST00000378444	NM_001123385.1	761	cGg/cAg																																																																														
BCOR	0	MSKCC	GRCh37	X	39933820	39933820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	191	271	0	ENST00000378444.4:c.779C>T	p.Ser260Phe	p.S260F	ENST00000378444	NM_001123385.1	260	tCc/tTc																																																																														
AR	0	MSKCC	GRCh37	X	66941720	66941720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	398	306	0	ENST00000374690.3:c.2364G>A	p.Met788Ile	p.M788I	ENST00000374690	NM_000044.3	788	atG/atA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	77	272	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	655	551	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
CASP8	0	MSKCC	GRCh37	2	202151246	202151246	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	204	432	0	ENST00000358485.4:c.1550del	p.Asn517ThrfsTer13	p.N517Tfs*13	ENST00000358485	NM_001080125.1	516	Aaa/aa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120468073	120468073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	179	341	0	ENST00000256646.2:c.4366T>C	p.Ser1456Pro	p.S1456P	ENST00000256646	NM_024408.3	1456	Tct/Cct																																																																														
FAT1	0	MSKCC	GRCh37	4	187584549	187584549	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	137	334	0	ENST00000441802.2:c.3484G>T	p.Glu1162Ter	p.E1162*	ENST00000441802	NM_005245.3	1162	Gag/Tag																																																																														
FAT1	0	MSKCC	GRCh37	4	187584728	187584728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	138	330	0	ENST00000441802.2:c.3305C>A	p.Thr1102Asn	p.T1102N	ENST00000441802	NM_005245.3	1102	aCc/aAc																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	918	676	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																														
SESN2	0	MSKCC	GRCh37	1	28599221	28599221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	119	553	1	ENST00000253063.3:c.667G>T	p.Asp223Tyr	p.D223Y	ENST00000253063	NM_031459.4	223	Gat/Tat																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932224	36932224	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	133	413	0	ENST00000361632.4:c.2245C>T	p.Gln749Ter	p.Q749*	ENST00000361632		749	Cag/Tag																																																																														
PRKD1	0	MSKCC	GRCh37	14	30132933	30132933	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs201537930		P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	75	426	0	ENST00000331968.5:c.668C>A	p.Ser223Tyr	p.S223Y	ENST00000331968	NM_002742.2	223	tCt/tAt																																																																														
CDK12	0	MSKCC	GRCh37	17	37687148	37687172	+	frameshift_variant	Frame_Shift_Del	DEL	TTGACACTGATGAACGAAACTCTGG	TTGACACTGATGAACGAAACTCTGG	-			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	63	441	0	ENST00000447079.4:c.4053_4077del	p.Asp1352GlnfsTer3	p.D1352Qfs*3	ENST00000447079	NM_015083.1	1351	aTTGACACTGATGAACGAAACTCTGGt/at																																																																														
BRCA1	0	MSKCC	GRCh37	17	41226526	41226527	+	stop_gained	Nonsense_Mutation	DNP	AG	AG	TT			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	158	405	1	ENST00000357654.3:c.4496_4497delinsAA	p.Ser1499Ter	p.S1499*	ENST00000357654	NM_007294.3	1499	tCT/tAA																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257613	19257613	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	99	599	1	ENST00000162023.5:c.613G>T	p.Glu205Ter	p.E205*	ENST00000162023		205	Gaa/Taa																																																																														
GNAS	0	MSKCC	GRCh37	20	57478726	57478726	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	46	256	0	ENST00000371085.3:c.313-1G>C		p.X105_splice	ENST00000371085	NM_000516.4	105																																																																															
NTRK2	0	MSKCC	GRCh37	9	87636288	87636288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	126	515	2	ENST00000277120.3:c.2453G>T	p.Gly818Val	p.G818V	ENST00000277120		818	gGc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	192	483	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	354	342	1	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016603	12016603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	185	255	0	ENST00000353533.5:c.739G>T	p.Asp247Tyr	p.D247Y	ENST00000353533	NM_003010.3	247	Gac/Tac																																																																														
IDH2	0	MSKCC	GRCh37	15	90628326	90628326	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147578332		P-0017510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	79	472	0	ENST00000330062.3:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000330062	NM_002168.2	362	cGg/cAg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398287	25398288	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0017510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	279	503	0	ENST00000256078.4:c.29_31dup	p.Gly10dup	p.G10dup	ENST00000256078	NM_033360.2	10	gct/gGAGct																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265911	41266366	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTC	ACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTC	-			P-0017510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	41	31	0	ENST00000349496.5:c.14-101_242-74del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	63	273	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36217216	36217216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	227	601	0	ENST00000222270.7:c.3965A>G	p.Tyr1322Cys	p.Y1322C	ENST00000222270	NM_014727.1	1322	tAc/tGc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25972654	25972654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	10	245	0	ENST00000435504.4:c.1771C>T	p.Arg591Cys	p.R591C	ENST00000435504		591	Cgc/Tgc																																																																														
FLT3	0	MSKCC	GRCh37	13	28624250	28624250	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	68	513	0	ENST00000241453.7:c.724A>C	p.Thr242Pro	p.T242P	ENST00000241453	NM_004119.2	242	Acc/Ccc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43724553	43724553	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	494	805	0	ENST00000382044.4:c.3514G>T	p.Val1172Phe	p.V1172F	ENST00000382044	NM_001141980.1	1172	Gtt/Ttt																																																																														
TP53	0	MSKCC	GRCh37	17	7579478	7579478	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	419	525	0	ENST00000269305.4:c.209del	p.Ala70ValfsTer53	p.A70Vfs*53	ENST00000269305	NM_001126112.2	70	gCt/gt																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	208	448	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
MYCN	0	MSKCC	GRCh37	2	16085681	16085681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017519-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	68	602	0	ENST00000281043.3:c.857G>A	p.Arg286His	p.R286H	ENST00000281043	NM_005378.4	286	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	516	393	1				ENST00000310581	NM_198253.2																																																																																
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	234	268	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391511	139391511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	75	531	0	ENST00000277541.6:c.6680C>T	p.Pro2227Leu	p.P2227L	ENST00000277541	NM_017617.3	2227	cCg/cTg																																																																														
ATRX	0	MSKCC	GRCh37	X	76814258	76814258	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	360	598	0	ENST00000373344.5:c.6386C>A	p.Ala2129Asp	p.A2129D	ENST00000373344	NM_000489.3	2129	gCt/gAt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52584590	52584590	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	485	477	0	ENST00000394830.3:c.4423G>T	p.Gly1475Ter	p.G1475*	ENST00000394830	NM_018313.4	1475	Gga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7579409	7579409	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	527	553	0	ENST00000269305.4:c.278delT	p.Leu93ArgfsTer30	p.L93Rfs*30	ENST00000269305	NM_001126112.2	93	cTg/cg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0017522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	50	689	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63537617	63537617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	80	564	1	ENST00000307078.5:c.1015C>T	p.Arg339Cys	p.R339C	ENST00000307078	NM_004655.3	339	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087372	27087421	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCCATGGGGACAGAAGGAGCTCTGAGTCCTGGAGTGAGCACATCAGGG	TCCCCATGGGGACAGAAGGAGCTCTGAGTCCTGGAGTGAGCACATCAGGG	-			P-0017522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	54	494	0	ENST00000324856.7:c.1946_1995del	p.Leu649HisfsTer10	p.L649Hfs*10	ENST00000324856	NM_006015.4	649	cTCCCCATGGGGACAGAAGGAGCTCTGAGTCCTGGAGTGAGCACATCAGGG/c																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106942	27106943	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	40	287	0	ENST00000324856.7:c.6555dup	p.Ala2186CysfsTer39	p.A2186Cfs*39	ENST00000324856	NM_006015.4	2185	att/aTtt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49422969	49422969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	59	711	1	ENST00000301067.7:c.14126C>T	p.Ser4709Leu	p.S4709L	ENST00000301067	NM_003482.3	4709	tCa/tTa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36231782	36231782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	14	589	0	ENST00000300305.3:c.602G>A	p.Arg201Gln	p.R201Q	ENST00000300305		201	cGa/cAa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32910455	32910455	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	252	388	0	ENST00000380152.3:c.1964del	p.Pro655GlnfsTer5	p.P655Qfs*5	ENST00000380152		655	Cca/ca																																																																														
FUBP1	0	MSKCC	GRCh37	1	78426056	78426057	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0017524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	256	448	0	ENST00000370768.2:c.1468_1469del	p.Asn490SerfsTer34	p.N490Sfs*34	ENST00000370768	NM_003902.3	490	AAt/t																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375207	118375207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	209	308	0	ENST00000534358.1:c.8600G>A	p.Gly2867Asp	p.G2867D	ENST00000534358	NM_005933.3	2867	gGt/gAt																																																																														
MALT1	0	MSKCC	GRCh37	18	56390346	56390346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	158	343	0	ENST00000348428.3:c.1085C>G	p.Pro362Arg	p.P362R	ENST00000348428	NM_006785.3	362	cCt/cGt																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091842	29091842	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147877722		P-0017524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	147	236	0	ENST00000328354.6:c.1115C>T	p.Ser372Phe	p.S372F	ENST00000328354	NM_007194.3	372	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0017529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			17	451	474	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
MTOR	0	MSKCC	GRCh37	1	11300482	11300482	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	614	614	1	ENST00000361445.4:c.1664del	p.Pro555GlnfsTer45	p.P555Qfs*45	ENST00000361445	NM_004958.3	555	cCa/ca																																																																														
PTPN11	0	MSKCC	GRCh37	12	112884155	112884155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	221	391	0	ENST00000351677.2:c.90G>T	p.Leu30Phe	p.L30F	ENST00000351677	NM_002834.3	30	ttG/ttT																																																																														
RB1	0	MSKCC	GRCh37	13	48955480	48955480	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			10	267	360	0	ENST00000267163.4:c.1596del	p.Ile532MetfsTer11	p.I532Mfs*11	ENST00000267163	NM_000321.2	532	atC/at																																																																														
PMS1	0	MSKCC	GRCh37	2	190728617	190728617	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	482	637	0	ENST00000441310.2:c.2005A>G	p.Lys669Glu	p.K669E	ENST00000441310	NM_000534.4	669	Aaa/Gaa																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138478032	138478032	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	336	490	0	ENST00000289153.2:c.154A>G	p.Ile52Val	p.I52V	ENST00000289153	NM_006219.2	52	Att/Gtt																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191466	185191466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	365	414	0	ENST00000265026.3:c.2347G>T	p.Gly783Cys	p.G783C	ENST00000265026	NM_004721.4	783	Ggc/Tgc																																																																														
KDR	0	MSKCC	GRCh37	4	55972035	55972035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	400	538	0	ENST00000263923.4:c.1609G>C	p.Gly537Arg	p.G537R	ENST00000263923	NM_002253.2	537	Ggg/Cgg																																																																														
APC	0	MSKCC	GRCh37	5	112176228	112176228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	41	514	0	ENST00000257430.4:c.4937G>A	p.Gly1646Glu	p.G1646E	ENST00000257430	NM_000038.5	1646	gGg/gAg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267382	198267382	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	176	426	0	ENST00000335508.6:c.1975C>G	p.Gln659Glu	p.Q659E	ENST00000335508	NM_012433.2	659	Caa/Gaa																																																																														
KIT	3815	MSKCC	GRCh37	4	55593609	55593611	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-	rs121913685		P-0017531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	506	408	0	ENST00000288135.5:c.1679_1681del	p.Val560del	p.V560del	ENST00000288135	NM_000222.2	559	GTT/-																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	171	513	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
NUP93	0	MSKCC	GRCh37	16	56871637	56871637	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1253	112	665	2	ENST00000308159.5:c.2017C>T	p.Arg673Trp	p.R673W	ENST00000308159	NM_014669.4	673	Cgg/Tgg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138478069	138478125	+	inframe_deletion	In_Frame_Del	DEL	CCCAGTGGGCAAAAGGAAATCCACAGGTATGGAGCCATCAGATGCTATCTGTGAATC	CCCAGTGGGCAAAAGGAAATCCACAGGTATGGAGCCATCAGATGCTATCTGTGAATC	-			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	124	584	0	ENST00000289153.2:c.61_117del	p.Asp21_Gly39del	p.D21_G39del	ENST00000289153	NM_006219.2	21	GATTCACAGATAGCATCTGATGGCTCCATACCTGTGGATTTCCTTTTGCCCACTGGG/-																																																																														
AKT1	0	MSKCC	GRCh37	14	105239264	105239264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	86	566	0	ENST00000349310.3:c.1123G>A	p.Glu375Lys	p.E375K	ENST00000349310	NM_001014432.1	375	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7573999	7574008	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCGGAACA	TCTCGGAACA	-			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1561	240	988	1	ENST00000269305.4:c.1019_1028del	p.Met340SerfsTer2	p.M340Sfs*2	ENST00000269305	NM_001126112.2	340	aTGTTCCGAGAg/ag																																																																														
SUZ12	0	MSKCC	GRCh37	17	30322647	30322647	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	160	461	0	ENST00000322652.5:c.1660C>T	p.Gln554Ter	p.Q554*	ENST00000322652	NM_015355.2	554	Caa/Taa																																																																														
DNMT1	0	MSKCC	GRCh37	19	10260290	10260290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	92	432	0	ENST00000340748.4:c.2377C>T	p.His793Tyr	p.H793Y	ENST00000340748		793	Cac/Tac																																																																														
IDH1	0	MSKCC	GRCh37	2	209108191	209108191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	77	482	0	ENST00000345146.2:c.658G>A	p.Asp220Asn	p.D220N	ENST00000345146	NM_005896.2	220	Gat/Aat																																																																														
FGFR3	0	MSKCC	GRCh37	4	1805531	1805531	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1262	324	737	0	ENST00000260795.2:c.1043C>G	p.Ser348Cys	p.S348C	ENST00000260795		348	tCt/tGt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127486	55127486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	206	598	3	ENST00000257290.5:c.274G>A	p.Ala92Thr	p.A92T	ENST00000257290	NM_006206.4	92	Gcg/Acg																																																																														
RAD21	0	MSKCC	GRCh37	8	117868405	117868405	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1391	179	698	1	ENST00000297338.2:c.937G>A	p.Val313Ile	p.V313I	ENST00000297338	NM_006265.2	313	Gtt/Att																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	346	446	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	31	357	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	31	357	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
SETD2	0	MSKCC	GRCh37	3	47165548	47165548	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77310684		P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1194	119	548	1	ENST00000409792.3:c.578C>T	p.Pro193Leu	p.P193L	ENST00000409792	NM_014159.6	193	cCg/cTg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	31	357	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18699296	18699296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	133	341	0	ENST00000266497.5:c.3397G>C	p.Asp1133His	p.D1133H	ENST00000266497		1133	Gac/Cac																																																																														
PTEN	0	MSKCC	GRCh37	10	89653826	89653827	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	150	254	0	ENST00000371953.3:c.125_126dup	p.Glu43LeufsTer12	p.E43Lfs*12	ENST00000371953	NM_000314.4	42	ctt/cTTtt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18699259	18699259	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	115	279	0	ENST00000266497.5:c.3360G>A	p.Met1120Ile	p.M1120I	ENST00000266497		1120	atG/atA																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18699338	18699338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	115	355	0	ENST00000266497.5:c.3439G>A	p.Asp1147Asn	p.D1147N	ENST00000266497		1147	Gac/Aac																																																																														
DOT1L	0	MSKCC	GRCh37	19	2217801	2217801	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	73	786	2	ENST00000398665.3:c.2578del	p.Glu860SerfsTer208	p.E860Sfs*208	ENST00000398665	NM_032482.2	859	Ggg/gg																																																																														
RBM10	0	MSKCC	GRCh37	X	47039369	47039369	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1198	498	868	0	ENST00000329236.7:c.761T>A	p.Val254Glu	p.V254E	ENST00000329236	NM_001204466.1	254	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	265	822	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
GNA11	0	MSKCC	GRCh37	19	3119306	3119306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	118	758	0	ENST00000078429.4:c.838G>C	p.Glu280Gln	p.E280Q	ENST00000078429	NM_002067.2	280	Gag/Cag																																																																														
AKT1	0	MSKCC	GRCh37	14	105237098	105237098	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	84	602	0	ENST00000349310.3:c.1347C>G	p.Ile449Met	p.I449M	ENST00000349310	NM_001014432.1	449	atC/atG																																																																														
BRCA1	0	MSKCC	GRCh37	17	41256962	41256963	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0017542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	100	364	0	ENST00000357654.3:c.223_224del	p.Glu75LysfsTer5	p.E75Kfs*5	ENST00000357654	NM_007294.3	75	GAa/a																																																																														
SDHA	0	MSKCC	GRCh37	5	228364	228364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	77	380	0	ENST00000264932.6:c.686G>A	p.Gly229Glu	p.G229E	ENST00000264932	NM_004168.2	229	gGg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	232	552	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061205	38061205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	128	306	0	ENST00000250448.2:c.784C>T	p.Arg262Cys	p.R262C	ENST00000250448	NM_004496.3	262	Cgc/Tgc																																																																														
BRAF	0	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	1095	335	0	ENST00000288602.6:c.1803A>C	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaC																																																																														
PARP1	0	MSKCC	GRCh37	1	226564945	226564945	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	303	434	0	ENST00000366794.5:c.1805A>T	p.Glu602Val	p.E602V	ENST00000366794	NM_001618.3	602	gAa/gTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032158	10032158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	97	466	0	ENST00000330684.3:c.665T>C	p.Ile222Thr	p.I222T	ENST00000330684	NM_001134407.1	222	aTc/aCc																																																																														
TP53	0	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	226	489	0	ENST00000269305.4:c.314G>A	p.Gly105Asp	p.G105D	ENST00000269305	NM_001126112.2	105	gGc/gAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0017545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	307	367	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
RB1	0	MSKCC	GRCh37	13	48941669	48941669	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	88	256	0	ENST00000267163.4:c.983del	p.Asn328IlefsTer4	p.N328Ifs*4	ENST00000267163	NM_000321.2	327	Aaa/aa																																																																														
EZH2	0	MSKCC	GRCh37	7	148515025	148515025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	307	495	1	ENST00000320356.2:c.1184G>A	p.Gly395Glu	p.G395E	ENST00000320356	NM_004456.4	395	gGa/gAa																																																																														
GLI1	0	MSKCC	GRCh37	12	57865371	57865371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2321	235	1214	0	ENST00000228682.2:c.2848C>G	p.Pro950Ala	p.P950A	ENST00000228682	NM_005269.2	950	Cct/Gct																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991805	72991805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1668	383	920	0	ENST00000268489.5:c.2240C>T	p.Ser747Phe	p.S747F	ENST00000268489	NM_006885.3	747	tCt/tTt																																																																														
ALK	0	MSKCC	GRCh37	2	29498316	29498316	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	203	547	0	ENST00000389048.3:c.1864A>G	p.Ile622Val	p.I622V	ENST00000389048	NM_004304.4	622	Atc/Gtc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149498383	149498383	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	217	412	0	ENST00000261799.4:c.2831A>C	p.Lys944Thr	p.K944T	ENST00000261799	NM_002609.3	944	aAg/aCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	181	314	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108154953	108154953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	63	84	0	ENST00000278616.4:c.3747-1G>T		p.X1249_splice	ENST00000278616	NM_000051.3	1249																																																																															
LATS2	0	MSKCC	GRCh37	13	21562744	21562744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	39	137	0	ENST00000382592.4:c.1175C>T	p.Ala392Val	p.A392V	ENST00000382592	NM_014572.2	392	gCg/gTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827441	72827441	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1706	113	1064	1	ENST00000268489.5:c.9140A>T	p.Gln3047Leu	p.Q3047L	ENST00000268489	NM_006885.3	3047	cAg/cTg																																																																														
NF1	0	MSKCC	GRCh37	17	29654605	29654605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	73	417	0	ENST00000358273.4:c.5357C>T	p.Ser1786Leu	p.S1786L	ENST00000358273	NM_001042492.2	1786	tCg/tTg																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138198228	138198228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	38	177	0	ENST00000237289.4:c.821C>T	p.Pro274Leu	p.P274L	ENST00000237289	NM_001270507.1	274	cCa/cTa																																																																														
RBM10	0	MSKCC	GRCh37	X	47041234	47041234	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	391	760	0	ENST00000329236.7:c.1431del	p.Thr478LeufsTer148	p.T478Lfs*148	ENST00000329236	NM_001204466.1	476	agC/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	151	681	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NF1	0	MSKCC	GRCh37	17	29550488	29550488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	107	465	0	ENST00000358273.4:c.1748A>G	p.Lys583Arg	p.K583R	ENST00000358273	NM_001042492.2	583	aAg/aGg																																																																														
JAK1	0	MSKCC	GRCh37	1	65335079	65335079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			739	76	800	1	ENST00000342505.4:c.562G>A	p.Glu188Lys	p.E188K	ENST00000342505	NM_002227.2	188	Gag/Aag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11094832	11094832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			728	179	846	0	ENST00000344626.4:c.5C>A	p.Ser2Tyr	p.S2Y	ENST00000344626	NM_003072.3	2	tCc/tAc																																																																														
PPP6C	0	MSKCC	GRCh37	9	127933444	127933444	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017548-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			901	84	704	0	ENST00000373547.4:c.91G>C	p.Val31Leu	p.V31L	ENST00000373547	NM_002721.4	31	Gtt/Ctt																																																																														
KIT	0	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	1212	357	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
LATS2	0	MSKCC	GRCh37	13	21562808	21562808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	36	198	2	ENST00000382592.4:c.1111C>T	p.Pro371Ser	p.P371S	ENST00000382592	NM_014572.2	371	Ccg/Tcg																																																																														
NF1	0	MSKCC	GRCh37	17	29559721	29559721	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	170	305	0	ENST00000358273.4:c.3318C>G	p.Tyr1106Ter	p.Y1106*	ENST00000358273	NM_001042492.2	1106	taC/taG																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	131	305	0	ENST00000335508.6:c.1873C>A	p.Arg625Ser	p.R625S	ENST00000335508	NM_012433.2	625	Cgt/Agt																																																																														
IRF4	0	MSKCC	GRCh37	6	394978	394978	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	221	270	0	ENST00000380956.4:c.374A>G	p.Tyr125Cys	p.Y125C	ENST00000380956	NM_001195286.1	125	tAc/tGc																																																																														
RB1	0	MSKCC	GRCh37	13	48951052	48951052	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	61	169	0	ENST00000267163.4:c.1216-2A>G		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																															
MGA	0	MSKCC	GRCh37	15	42054046	42054046	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	106	393	0	ENST00000219905.7:c.7508C>A	p.Ser2503Ter	p.S2503*	ENST00000219905	NM_001164273.1	2503	tCa/tAa																																																																														
FANCA	0	MSKCC	GRCh37	16	89836414	89836414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	118	305	0	ENST00000389301.3:c.2335C>G	p.Pro779Ala	p.P779A	ENST00000389301	NM_000135.2	779	Cca/Gca																																																																														
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1409	335	743	0	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7983127	7983127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	126	561	0	ENST00000319144.4:c.887C>A	p.Pro296Gln	p.P296Q	ENST00000319144	NM_001139.2	296	cCg/cAg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602443	10602443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	133	592	0	ENST00000171111.5:c.1135G>A	p.Gly379Ser	p.G379S	ENST00000171111	NM_203500.1	379	Ggc/Agc																																																																														
MST1R	0	MSKCC	GRCh37	3	49927998	49927998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1847	111	895	1	ENST00000296474.3:c.3730C>T	p.His1244Tyr	p.H1244Y	ENST00000296474	NM_002447.2	1244	Cat/Tat																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920499	134920499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1242	214	535	1	ENST00000398015.3:c.2314G>A	p.Asp772Asn	p.D772N	ENST00000398015	NM_004441.4	772	Gac/Aac																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280067	66280067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	155	457	0	ENST00000273854.3:c.1622G>T	p.Arg541Leu	p.R541L	ENST00000273854	NM_004439.5	541	cGa/cTa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44919322	44919322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	40	302	0	ENST00000377967.4:c.1250C>A	p.Pro417His	p.P417H	ENST00000377967	NM_021140.2	417	cCt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	407	389	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	289	468	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974760	21974760	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	185	306	0	ENST00000304494.5:c.67G>C	p.Gly23Arg	p.G23R	ENST00000304494	NM_000077.4	23	Ggt/Cgt																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974760	21974760	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	185	306	0	ENST00000304494.5:c.67G>C	p.Gly23Arg	p.G23R	ENST00000304494	NM_000077.4	23	Ggt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	89	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	0	MSKCC	GRCh37	19	1220494	1220494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	189	658	0	ENST00000326873.7:c.587G>T	p.Gly196Val	p.G196V	ENST00000326873	NM_000455.4	196	gGc/gTc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18266730	18266730	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	136	366	0	ENST00000222254.8:c.41C>G	p.Pro14Arg	p.P14R	ENST00000222254	NM_005027.3	14	cCg/cGg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156607	55156607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	80	533	0	ENST00000257290.5:c.3008G>T	p.Trp1003Leu	p.W1003L	ENST00000257290	NM_006206.4	1003	tGg/tTg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217283	66217283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	59	356	0	ENST00000273854.3:c.2332G>T	p.Val778Phe	p.V778F	ENST00000273854	NM_004439.5	778	Gtt/Ttt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467598	66467598	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	105	437	0	ENST00000273854.3:c.671T>A	p.Val224Asp	p.V224D	ENST00000273854	NM_004439.5	224	gTt/gAt																																																																														
RAD50	0	MSKCC	GRCh37	5	131944829	131944829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	25	183	0	ENST00000265335.6:c.2850G>T	p.Lys950Asn	p.K950N	ENST00000265335		950	aaG/aaT																																																																														
NSD1	0	MSKCC	GRCh37	5	176562800	176562800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	90	521	0	ENST00000439151.2:c.696G>T	p.Gln232His	p.Q232H	ENST00000439151	NM_022455.4	232	caG/caT																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225414	26225414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1593	242	1325	0	ENST00000360408.1:c.32C>A	p.Ser11Tyr	p.S11Y	ENST00000360408	NM_003532.2	11	tCc/tAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486280	8486280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	66	315	0	ENST00000356435.5:c.2537C>T	p.Pro846Leu	p.P846L	ENST00000356435		846	cCg/cTg																																																																														
RBM10	0	MSKCC	GRCh37	X	47041022	47041022	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	128	692	1	ENST00000329236.7:c.1318C>T	p.Gln440Ter	p.Q440*	ENST00000329236	NM_001204466.1	440	Cag/Tag																																																																														
AR	0	MSKCC	GRCh37	X	66941763	66941763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	173	977	3	ENST00000374690.3:c.2407C>A	p.Gln803Lys	p.Q803K	ENST00000374690	NM_000044.3	803	Cag/Aag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32936726	32936728	+	stop_gained	Nonsense_Mutation	ONP	TAG	TAG	AAA			P-0017554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	67	373	1	ENST00000380152.3:c.7872_7874delinsAAA	p.Tyr2624_Arg2625delinsTer	p.Y2624_R2625delins*	ENST00000380152		2624	taTAGa/taAAAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023151	27023179	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	-			P-0017555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	123	93	0	ENST00000324856.7:c.267_295del	p.Ser90ProfsTer11	p.S90Pfs*11	ENST00000324856	NM_006015.4	86	gGCGGAGCCGGCAGCGGCGGCGGGCCCGGC/g																																																																														
MYOD1	0	MSKCC	GRCh37	11	17742485	17742485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	139	717	2	ENST00000250003.3:c.667C>T	p.Arg223Trp	p.R223W	ENST00000250003	NM_002478.4	223	Cgg/Tgg																																																																														
TSC1	0	MSKCC	GRCh37	9	135797309	135797309	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	71	296	0	ENST00000298552.3:c.560T>C	p.Leu187Pro	p.L187P	ENST00000298552	NM_001162426.1	187	cTc/cCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	113	366	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	103	205	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
GPS2	0	MSKCC	GRCh37	17	7217418	7217421	+	frameshift_variant	Frame_Shift_Del	DEL	AGTT	AGTT	-			P-0017557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	158	593	0	ENST00000380728.2:c.375_378del	p.Thr126IlefsTer218	p.T126Ifs*218	ENST00000380728		125	ggAACT/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0017557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	209	635	1	ENST00000269305.4:c.672+2T>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
FANCA	0	MSKCC	GRCh37	16	89813280	89813280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	109	396	2	ENST00000389301.3:c.3367G>A	p.Gly1123Arg	p.G1123R	ENST00000389301	NM_000135.2	1123	Gga/Aga																																																																														
FLT1	0	MSKCC	GRCh37	13	28877486	28877486	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	74	227	0	ENST00000282397.4:c.3835A>C	p.Ser1279Arg	p.S1279R	ENST00000282397	NM_002019.4	1279	Agt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	495	632	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
RB1	0	MSKCC	GRCh37	13	48954222	48954237	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TAAATTTTTTACTTTT	TAAATTTTTTACTTTT	AAA			P-0017564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	204	268	1	ENST00000267163.4:c.1421+2_1421+17delinsAAA		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
ARID1A	0	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	143	637	0	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	98	532	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	20	211	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	131	616	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RNF43	0	MSKCC	GRCh37	17	56448393	56448393	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	114	389	0	ENST00000407977.2:c.254C>T	p.Ser85Phe	p.S85F	ENST00000407977		85	tCc/tTc																																																																														
MGA	0	MSKCC	GRCh37	15	42059450	42059450	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1263	315	1081	0	ENST00000219905.7:c.9170G>C	p.Gly3057Ala	p.G3057A	ENST00000219905	NM_001164273.1	3057	gGg/gCg																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4110608	4110608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	148	501	0	ENST00000262948.5:c.349C>T	p.Arg117Cys	p.R117C	ENST00000262948	NM_030662.3	117	Cgc/Tgc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732958	30732958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	153	446	0	ENST00000359013.4:c.1646A>G	p.Asp549Gly	p.D549G	ENST00000359013	NM_001024847.2	549	gAc/gGc																																																																														
KLF4	0	MSKCC	GRCh37	9	110250401	110250401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	166	687	1	ENST00000374672.4:c.274C>A	p.Pro92Thr	p.P92T	ENST00000374672	NM_004235.4	92	Cct/Act																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	359	640	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
DDR2	0	MSKCC	GRCh37	1	162740263	162740263	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	63	507	0	ENST00000367921.3:c.1465C>T	p.Arg489Ter	p.R489*	ENST00000367921	NM_006182.2	489	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	306	708	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	101	255	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	30	142	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	86	444	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952086	178952086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	112	390	0	ENST00000263967.3:c.3141T>A	p.His1047Gln	p.H1047Q	ENST00000263967	NM_006218.2	1047	caT/caA																																																																														
APC	0	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	128	382	0	ENST00000257430.4:c.2544dupA	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																														
RAF1	0	MSKCC	GRCh37	3	12645694	12645694	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs3730271		P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	175	347	0	ENST00000251849.4:c.775T>C	p.Ser259Pro	p.S259P	ENST00000251849	NM_002880.3	259	Tcc/Ccc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188294	32188295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	268	731	3	ENST00000375023.3:c.1046dupG	p.Thr350HisfsTer4	p.T350Hfs*4	ENST00000375023	NM_004557.3	349	ggc/ggGc																																																																														
BARD1	0	MSKCC	GRCh37	2	215645974	215645975	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	112	542	0	ENST00000260947.4:c.623dup	p.Lys209GlufsTer5	p.K209Efs*5	ENST00000260947	NM_000465.2	208	aag/aaAg																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	205	634	3	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119780	70119781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	257	575	0	ENST00000245479.2:c.788dupG	p.Arg264GlnfsTer32	p.R264Qfs*32	ENST00000245479	NM_000346.3	261	gag/gaGg																																																																														
TET1	0	MSKCC	GRCh37	10	70406237	70406237	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	53	564	1	ENST00000373644.4:c.3751G>T	p.Ala1251Ser	p.A1251S	ENST00000373644	NM_030625.2	1251	Gca/Tca																																																																														
IGF2	0	MSKCC	GRCh37	11	2156696	2156696	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1206	276	863	0	ENST00000434045.2:c.226T>G	p.Ser76Ala	p.S76A	ENST00000434045	NM_001127598.1	76	Tcg/Gcg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137075	64137075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	186	347	1	ENST00000334205.4:c.1586G>A	p.Arg529His	p.R529H	ENST00000334205	NM_003942.2	529	cGc/cAc																																																																														
CHEK1	0	MSKCC	GRCh37	11	125505377	125505377	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	110	456	0	ENST00000428830.2:c.667G>T	p.Glu223Ter	p.E223*	ENST00000428830	NM_001114121.2	223	Gaa/Taa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103524621	103524621	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	208	529	0	ENST00000355739.4:c.2752T>A	p.Leu918Ile	p.L918I	ENST00000355739	NM_000123.3	918	Tta/Ata																																																																														
B2M	0	MSKCC	GRCh37	15	45007813	45007814	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	43	360	0	ENST00000558401.1:c.262_263delAC	p.Thr88Ter	p.T88*	ENST00000558401	NM_004048.2	87	tAC/t																																																																														
TSC2	0	MSKCC	GRCh37	16	2134686	2134686	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	138	362	0	ENST00000219476.3:c.4463A>G	p.Asn1488Ser	p.N1488S	ENST00000219476	NM_000548.3	1488	aAt/aGt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831560	72831560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1649	107	1070	2	ENST00000268489.5:c.5021C>T	p.Ala1674Val	p.A1674V	ENST00000268489	NM_006885.3	1674	gCt/gTt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350059	89350059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	406	1003	3	ENST00000301030.4:c.2891G>A	p.Gly964Asp	p.G964D	ENST00000301030	NM_001256183.1	964	gGc/gAc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11924261	11924262	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	11	72	0	ENST00000353533.5:c.63dup	p.Gly22ArgfsTer19	p.G22Rfs*19	ENST00000353533	NM_003010.3	20	acc/aCcc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032505	12032505	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	39	266	1	ENST00000353533.5:c.941T>C	p.Phe314Ser	p.F314S	ENST00000353533	NM_003010.3	314	tTt/tCt																																																																														
STAT5B	0	MSKCC	GRCh37	17	40375458	40375459	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1618	459	1084	0	ENST00000293328.3:c.491dup	p.Leu165AlafsTer54	p.L165Afs*54	ENST00000293328	NM_012448.3	164	aag/aaAg																																																																														
CD79B	0	MSKCC	GRCh37	17	62006635	62006635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	248	617	1	ENST00000392795.3:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000392795	NM_001039933.1	215	cGg/cAg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532556	63532556	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	224	382	0	ENST00000307078.5:c.2023delC	p.Arg675ValfsTer14	p.R675Vfs*14	ENST00000307078	NM_004655.3	675	Cgt/gt																																																																														
TCF3	0	MSKCC	GRCh37	19	1615784	1615784	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1771	97	1039	0	ENST00000344749.5:c.1487A>C	p.Glu496Ala	p.E496A	ENST00000344749	NM_001136139.2	496	gAg/gCg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212055	5212055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	197	538	2	ENST00000357368.4:c.4976G>A	p.Arg1659His	p.R1659H	ENST00000357368	NM_002850.3	1659	cGc/cAc																																																																														
BRD4	0	MSKCC	GRCh37	19	15366968	15366968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	67	645	1	ENST00000263377.2:c.1658G>T	p.Arg553Met	p.R553M	ENST00000263377	NM_058243.2	553	aGg/aTg																																																																														
INHA	0	MSKCC	GRCh37	2	220439836	220439836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	394	868	2	ENST00000243786.2:c.689C>T	p.Ala230Val	p.A230V	ENST00000243786	NM_002191.3	230	gCc/gTc																																																																														
GATA2	0	MSKCC	GRCh37	3	128204750	128204750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	335	835	1	ENST00000341105.2:c.691C>T	p.Pro231Ser	p.P231S	ENST00000341105	NM_032638.4	231	Cca/Tca																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670340	134670340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	282	543	1	ENST00000398015.3:c.251G>A	p.Arg84His	p.R84H	ENST00000398015	NM_004441.4	84	cGc/cAc																																																																														
KDR	0	MSKCC	GRCh37	4	55946218	55946218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	228	525	0	ENST00000263923.4:c.3961A>G	p.Ser1321Gly	p.S1321G	ENST00000263923	NM_002253.2	1321	Agt/Ggt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153250864	153250864	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	126	475	0	ENST00000281708.4:c.1196A>T	p.Asp399Val	p.D399V	ENST00000281708	NM_033632.3	399	gAt/gTt																																																																														
FAT1	0	MSKCC	GRCh37	4	187541699	187541700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	235	524	0	ENST00000441802.2:c.6040dup	p.Tyr2014LeufsTer11	p.Y2014Lfs*11	ENST00000441802	NM_005245.3	2014	tat/tTat																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520249	176520249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	186	436	0	ENST00000292408.4:c.1168T>C	p.Tyr390His	p.Y390H	ENST00000292408	NM_213647.1	390	Tat/Cat																																																																														
NSD1	0	MSKCC	GRCh37	5	176684101	176684101	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	276	592	0	ENST00000439151.2:c.4915A>G	p.Ile1639Val	p.I1639V	ENST00000439151	NM_022455.4	1639	Atc/Gtc																																																																														
PMS2	0	MSKCC	GRCh37	7	6042221	6042221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	322	671	1	ENST00000265849.7:c.400C>T	p.Arg134Ter	p.R134*	ENST00000265849	NM_000535.5	134	Cga/Tga																																																																														
BRAF	0	MSKCC	GRCh37	7	140476721	140476721	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	135	418	0	ENST00000288602.6:c.1685A>C	p.Gln562Pro	p.Q562P	ENST00000288602	NM_004333.4	562	cAg/cCg																																																																														
RAD21	0	MSKCC	GRCh37	8	117874134	117874134	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs77749836		P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	50	715	0	ENST00000297338.2:c.320C>T	p.Ala107Val	p.A107V	ENST00000297338	NM_006265.2	107	gCc/gTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139397748	139397748	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	197	373	0	ENST00000277541.6:c.5053T>C	p.Cys1685Arg	p.C1685R	ENST00000277541	NM_017617.3	1685	Tgt/Cgt																																																																														
CRLF2	0	MSKCC	GRCh37	X	1314915	1314917	+	downstream_gene_variant	3'Flank	DEL	AGA	AGA	-			P-0017583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	52	578	0				ENST00000381566																																																																																	
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	276	410	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8106094	8106094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	122	334	0	ENST00000346208.3:c.914G>A	p.Arg305Gln	p.R305Q	ENST00000346208		305	cGa/cAa																																																																														
KRAS	0	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	423	558	1	ENST00000256078.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	61	Caa/Aaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0017586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	435	551	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223299	5223299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	58	199	0	ENST00000357368.4:c.2504G>T	p.Arg835Leu	p.R835L	ENST00000357368	NM_002850.3	835	cGc/cTc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42845319	42845319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	192	606	0	ENST00000398585.3:c.943G>A	p.Val315Ile	p.V315I	ENST00000398585	NM_001135099.1	315	Gtc/Atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	14	547	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
FLT3	0	MSKCC	GRCh37	13	28578246	28578246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	26	664	1	ENST00000241453.7:c.2925C>A	p.Phe975Leu	p.F975L	ENST00000241453	NM_004119.2	975	ttC/ttA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0017588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	38	672	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	154	191	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8115737	8115737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	512	782	0	ENST00000346208.3:c.1083C>G	p.Ile361Met	p.I361M	ENST00000346208		361	atC/atG																																																																														
CBFB	0	MSKCC	GRCh37	16	67100631	67100631	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	450	501	1	ENST00000412916.2:c.329G>A	p.Trp110Ter	p.W110*	ENST00000412916		110	tGg/tAg																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27840030	27840030	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	645	1038	0	ENST00000328488.2:c.64G>C	p.Ala22Pro	p.A22P	ENST00000328488	NM_003533.2	22	Gcc/Ccc																																																																														
PAK1	0	MSKCC	GRCh37	11	77090298	77090298	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	294	623	0	ENST00000356341.3:c.427A>C	p.Met143Leu	p.M143L	ENST00000356341	NM_002576.4	143	Atg/Ctg																																																																														
RBM10	0	MSKCC	GRCh37	X	47034492	47034492	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	96	771	1	ENST00000329236.7:c.345+1G>A		p.X115_splice	ENST00000329236	NM_001204466.1	115																																																																															
EGFR	0	MSKCC	GRCh37	7	55242468	55242483	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAAGCAACA	ATTAAGAGAAGCAACA	G			P-0017594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	109	445	0	ENST00000275493.2:c.2238_2253delATTAAGAGAAGCAACAinsG	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACA/gaG																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950061	38950061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	151	309	0	ENST00000357387.3:c.3889C>T	p.Pro1297Ser	p.P1297S	ENST00000357387	NM_152756.3	1297	Cct/Tct																																																																														
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0017599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	478	345	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
ASXL1	0	MSKCC	GRCh37	20	31022291	31022291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	649	608	0	ENST00000375687.4:c.1776G>T	p.Gln592His	p.Q592H	ENST00000375687	NM_015338.5	592	caG/caT																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022736	31022736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	340	284	0	ENST00000375687.4:c.2221G>A	p.Asp741Asn	p.D741N	ENST00000375687	NM_015338.5	741	Gat/Aat																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023354	31023354	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	360	292	0	ENST00000375687.4:c.2839G>C	p.Glu947Gln	p.E947Q	ENST00000375687	NM_015338.5	947	Gag/Cag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942833	44942833	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	529	418	0	ENST00000377967.4:c.3414delT	p.Pro1139GlnfsTer19	p.P1139Qfs*19	ENST00000377967	NM_021140.2	1138	gTt/gt																																																																														
MEN1	0	MSKCC	GRCh37	11	64577329	64577330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0017601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	126	493	0	ENST00000337652.1:c.252_253insTT	p.Ile85LeufsTer35	p.I85Lfs*35	ENST00000337652	NM_130803.2	84	-/TT																																																																														
SPEN	0	MSKCC	GRCh37	1	16202741	16202741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	146	610	0	ENST00000375759.3:c.449G>A	p.Gly150Glu	p.G150E	ENST00000375759	NM_015001.2	150	gGa/gAa																																																																														
GATA3	0	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	128	621	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061636	38061644	+	inframe_deletion	In_Frame_Del	DEL	GCACCCATG	GCACCCATG	-			P-0017603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	41	179	0	ENST00000250448.2:c.345_353delCATGGGTGC	p.Met116_Ala118del	p.M116_A118del	ENST00000250448	NM_004496.3	115	gcCATGGGTGCg/gcg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	107	373	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MAX	0	MSKCC	GRCh37	14	65560477	65560477	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	196	445	0	ENST00000358664.4:c.120delA	p.Asp41ThrfsTer24	p.D41Tfs*24	ENST00000358664	NM_002382.4	40	aaA/aa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88726687	88726687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	75	393	0	ENST00000360948.2:c.357G>T	p.Gln119His	p.Q119H	ENST00000360948	NM_001012338.2	119	caG/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	81	270	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
CDC73	0	MSKCC	GRCh37	1	193111037	193111038	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	56	263	2	ENST00000367435.3:c.570_571delGGinsTT	p.MetAla190IleSer	p.MA190IS	ENST00000367435	NM_024529.4	190	atGGct/atTTct																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857624	9857624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	101	359	0	ENST00000330684.3:c.3777C>A	p.Asn1259Lys	p.N1259K	ENST00000330684	NM_001134407.1	1259	aaC/aaA																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032027	10032027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1439	215	653	0	ENST00000330684.3:c.796G>A	p.Glu266Lys	p.E266K	ENST00000330684	NM_001134407.1	266	Gag/Aag																																																																														
FANCA	0	MSKCC	GRCh37	16	89806495	89806495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	112	405	0	ENST00000389301.3:c.3841C>A	p.Leu1281Met	p.L1281M	ENST00000389301	NM_000135.2	1281	Ctg/Atg																																																																														
NF1	0	MSKCC	GRCh37	17	29652837	29652837	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	89	255	1	ENST00000358273.4:c.4836-1G>T		p.X1612_splice	ENST00000358273	NM_001042492.2	1612																																																																															
PPM1D	0	MSKCC	GRCh37	17	58740710	58740710	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1852	318	844	2	ENST00000305921.3:c.1615G>T	p.Glu539Ter	p.E539*	ENST00000305921	NM_003620.3	539	Gaa/Taa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528641	89528641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	98	245	0	ENST00000336596.2:c.2941G>T	p.Val981Phe	p.V981F	ENST00000336596	NM_005233.5	981	Gtt/Ttt																																																																														
TET2	0	MSKCC	GRCh37	4	106196937	106196937	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	143	401	0	ENST00000380013.4:c.5270A>T	p.His1757Leu	p.H1757L	ENST00000380013	NM_001127208.2	1757	cAt/cTt																																																																														
BCOR	0	MSKCC	GRCh37	X	39931762	39931762	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1370	221	686	0	ENST00000378444.4:c.2837A>T	p.Glu946Val	p.E946V	ENST00000378444	NM_001123385.1	946	gAg/gTg																																																																														
AR	0	MSKCC	GRCh37	X	66765707	66765707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1670	113	757	0	ENST00000374690.3:c.719G>C	p.Cys240Ser	p.C240S	ENST00000374690	NM_000044.3	240	tGt/tCt																																																																														
ATRX	0	MSKCC	GRCh37	X	76938671	76938671	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	78	494	0	ENST00000373344.5:c.2077G>T	p.Val693Phe	p.V693F	ENST00000373344	NM_000489.3	693	Gtt/Ttt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	86	308	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	125	469	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47059200	47059201	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCA			P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	69	327	0	ENST00000409792.3:c.7457_7460dup	p.Pro2488GlufsTer7	p.P2488Efs*7	ENST00000409792	NM_014159.6	2487	aac/aaTGAAc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45394763	45394779	+	frameshift_variant	Frame_Shift_Del	DEL	AGTCATCCAGAGGCGGA	AGTCATCCAGAGGCGGA	-			P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	38	218	0	ENST00000262160.6:c.570_586delTCCGCCTCTGGATGACT	p.Pro191TyrfsTer9	p.P191Yfs*9	ENST00000262160	NM_005901.5	190	ctTCCGCCTCTGGATGACTat/ctat																																																																														
SETD2	0	MSKCC	GRCh37	3	47127768	47127768	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	108	306	0	ENST00000409792.3:c.5314G>T	p.Glu1772Ter	p.E1772*	ENST00000409792	NM_014159.6	1772	Gaa/Taa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467706	50467706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	158	449	0	ENST00000331340.3:c.941C>G	p.Ala314Gly	p.A314G	ENST00000331340	NM_006060.4	314	gCc/gGc																																																																														
MYC	0	MSKCC	GRCh37	8	128750866	128750866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	283	591	0	ENST00000377970.2:c.403G>A	p.Asp135Asn	p.D135N	ENST00000377970	NM_002467.4	135	Gac/Aac																																																																														
PTEN	0	MSKCC	GRCh37	10	89711883	89711884	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0017612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	157	385	0	ENST00000371953.3:c.502_503delAT	p.Ile168SerfsTer11	p.I168Sfs*11	ENST00000371953	NM_000314.4	167	acTAtt/actt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457283	67457285	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0017612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	182	493	0	ENST00000327367.4:c.259_261delATC	p.Ile87del	p.I87del	ENST00000327367	NM_005902.3	86	gTCAtc/gtc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0017614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	175	254	1	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9892272	9892272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	316	427	0	ENST00000330684.3:c.2218G>T	p.Gly740Trp	p.G740W	ENST00000330684	NM_001134407.1	740	Ggg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	288	344	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
CDK12	0	MSKCC	GRCh37	17	37673771	37673772	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGC			P-0017615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	294	469	0	ENST00000447079.4:c.2928_2931dup	p.Tyr978AlafsTer19	p.Y978Afs*19	ENST00000447079	NM_015083.1	975	-/AAGC																																																																														
ESR1	0	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	203	454	1	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115956	8115956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	127	319	0	ENST00000346208.3:c.1305delC	p.Ser436ProfsTer39	p.S436Pfs*39	ENST00000346208		434	caC/ca																																																																														
MEN1	0	MSKCC	GRCh37	11	64577439	64577440	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0017616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	212	828	0	ENST00000337652.1:c.142_143delCT	p.Leu48GlyfsTer68	p.L48Gfs*68	ENST00000337652	NM_130803.2	48	CTg/g																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016562	12016562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	114	459	0	ENST00000353533.5:c.698C>T	p.Ser233Phe	p.S233F	ENST00000353533	NM_003010.3	233	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	1206	851	2	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat																																																																														
JAK1	0	MSKCC	GRCh37	1	65335115	65335115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	775	655	0	ENST00000342505.4:c.526C>A	p.Pro176Thr	p.P176T	ENST00000342505	NM_002227.2	176	Ccc/Acc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120548042	120548042	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	14	73	0	ENST00000256646.2:c.325T>A	p.Cys109Ser	p.C109S	ENST00000256646	NM_024408.3	109	Tgc/Agc																																																																														
RB1	0	MSKCC	GRCh37	13	49039400	49039401	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	521	803	2	ENST00000267163.4:c.2388dup	p.Arg798ThrfsTer17	p.R798Tfs*17	ENST00000267163	NM_000321.2	795	-/C																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15296169	15296169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	713	611	0	ENST00000263388.2:c.2195G>T	p.Ser732Ile	p.S732I	ENST00000263388	NM_000435.2	732	aGc/aTc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38946575	38946575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	153	340	0	ENST00000357387.3:c.4394C>T	p.Ala1465Val	p.A1465V	ENST00000357387	NM_152756.3	1465	gCa/gTa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56179456	56179456	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	223	474	0	ENST00000399503.3:c.3769T>C	p.Cys1257Arg	p.C1257R	ENST00000399503	NM_005921.1	1257	Tgt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	138	401	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	215	418	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41408891	41408891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	172	550	0	ENST00000373198.4:c.535G>T	p.Val179Leu	p.V179L	ENST00000373198	NM_133170.3	179	Gtg/Ttg																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67198946	67198946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	249	445	0	ENST00000312629.5:c.417G>T	p.Gln139His	p.Q139H	ENST00000312629	NM_003952.2	139	caG/caT																																																																														
ERBB3	0	MSKCC	GRCh37	12	56480324	56480324	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	128	410	0	ENST00000267101.3:c.431C>A	p.Ser144Ter	p.S144*	ENST00000267101	NM_001982.3	144	tCa/tAa																																																																														
TSHR	0	MSKCC	GRCh37	14	81422157	81422157	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	59	425	0	ENST00000298171.2:c.133C>G	p.Gln45Glu	p.Q45E	ENST00000298171	NM_000369.2	45	Caa/Gaa																																																																														
TSHR	0	MSKCC	GRCh37	14	81610476	81610476	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	180	618	0	ENST00000298171.2:c.2074C>A	p.Leu692Ile	p.L692I	ENST00000298171	NM_000369.2	692	Cta/Ata																																																																														
AKT1	0	MSKCC	GRCh37	14	105239420	105239420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	146	443	0	ENST00000349310.3:c.967G>C	p.Asp323His	p.D323H	ENST00000349310	NM_001014432.1	323	Gac/Cac																																																																														
TET2	0	MSKCC	GRCh37	4	106156095	106156095	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	214	525	0	ENST00000380013.4:c.998delC	p.Pro333HisfsTer14	p.P333Hfs*14	ENST00000380013	NM_001127208.2	332	tgC/tg																																																																														
MDC1	0	MSKCC	GRCh37	6	30675502	30675502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1162	68	653	0	ENST00000376406.3:c.2854G>A	p.Glu952Lys	p.E952K	ENST00000376406	NM_014641.2	952	Gag/Aag																																																																														
MDC1	0	MSKCC	GRCh37	6	30675513	30675513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	79	704	1	ENST00000376406.3:c.2843G>A	p.Arg948Lys	p.R948K	ENST00000376406	NM_014641.2	948	aGa/aAa																																																																														
MDC1	0	MSKCC	GRCh37	6	30675733	30675733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1550	94	740	1	ENST00000376406.3:c.2623G>A	p.Asp875Asn	p.D875N	ENST00000376406	NM_014641.2	875	Gac/Aac																																																																														
MDC1	0	MSKCC	GRCh37	6	30675739	30675739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1630	99	762	0	ENST00000376406.3:c.2617G>C	p.Glu873Gln	p.E873Q	ENST00000376406	NM_014641.2	873	Gaa/Caa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527763	157527764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	79	329	0	ENST00000346085.5:c.5490dup	p.Gln1831SerfsTer5	p.Q1831Sfs*5	ENST00000346085	NM_020732.3	1830	att/aTtt																																																																														
HGF	0	MSKCC	GRCh37	7	81372685	81372685	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	166	503	1	ENST00000222390.5:c.849T>A	p.Cys283Ter	p.C283*	ENST00000222390	NM_000601.4	283	tgT/tgA																																																																														
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	293	573	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	170	408	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0017621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	114	294	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112177094	112177095	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0017621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	69	513	0	ENST00000257430.4:c.5803_5804delCA	p.Gln1935ValfsTer13	p.Q1935Vfs*13	ENST00000257430	NM_000038.5	1935	CAg/g																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0017622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	397	501	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186501402	186501402	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0017622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			5895	748	1190	0	ENST00000323963.5:c.3G>A	p.Met1?	p.M1?	ENST00000323963		1	atG/atA																																																																														
FLT4	0	MSKCC	GRCh37	5	180056989	180056989	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	120	742	1	ENST00000261937.6:c.630G>A	p.Trp210Ter	p.W210*	ENST00000261937	NM_182925.4	210	tgG/tgA																																																																														
PARP1	0	MSKCC	GRCh37	1	226567827	226567827	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	306	438	0	ENST00000366794.5:c.1339A>C	p.Lys447Gln	p.K447Q	ENST00000366794	NM_001618.3	447	Aag/Cag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781348	3781349	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCT			P-0017622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	406	623	0	ENST00000262367.5:c.5014_5016dup	p.Arg1672dup	p.R1672dup	ENST00000262367	NM_004380.2	1672	-/AGA																																																																														
APC	0	MSKCC	GRCh37	5	112174187	112174187	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	108	513	0	ENST00000257430.4:c.2896A>C	p.Ser966Arg	p.S966R	ENST00000257430	NM_000038.5	966	Agt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	78	330	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	417	680	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
TBX3	0	MSKCC	GRCh37	12	115117311	115117311	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	412	550	0	ENST00000257566.3:c.863delA	p.Lys288ArgfsTer2	p.K288Rfs*2	ENST00000257566	NM_016569.3	288	aAg/ag																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16052795	16052795	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	40	333	0	ENST00000268712.3:c.879del	p.Phe293LeufsTer33	p.F293Lfs*33	ENST00000268712	NM_006311.3	293	ttT/tt																																																																														
GATA3	0	MSKCC	GRCh37	10	8100621	8100622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	172	730	0	ENST00000346208.3:c.598dup	p.His200ProfsTer103	p.H200Pfs*103	ENST00000346208		199	tcc/tCcc																																																																														
TBX3	0	MSKCC	GRCh37	12	115111990	115111990	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	55	307	0	ENST00000257566.3:c.1750C>T	p.Gln584Ter	p.Q584*	ENST00000257566	NM_016569.3	584	Cag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29587511	29587511	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	153	358	0	ENST00000358273.4:c.4557delG	p.Gln1520SerfsTer54	p.Q1520Sfs*54	ENST00000358273	NM_001042492.2	1519	Ggg/gg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252972	36252974	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	627	361	1	ENST00000300305.3:c.388_390delGTC	p.Val130del	p.V130del	ENST00000300305		130	GTC/-																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56174833	56174849	+	frameshift_variant	Frame_Shift_Del	DEL	TACTCCTTGCCACAGTT	TACTCCTTGCCACAGTT	-			P-0017623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	264	543	0	ENST00000399503.3:c.1994_2010delCTCCTTGCCACAGTTTA	p.Thr665SerfsTer26	p.T665Sfs*26	ENST00000399503	NM_005921.1	664	taTACTCCTTGCCACAGTTta/tata																																																																														
FANCA	0	MSKCC	GRCh37	16	89877429	89877429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	586	770	0	ENST00000389301.3:c.334C>T	p.Leu112Phe	p.L112F	ENST00000389301	NM_000135.2	112	Ctc/Ttc																																																																														
NF2	0	MSKCC	GRCh37	22	30051638	30051638	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	81	482	0	ENST00000338641.4:c.572G>A	p.Trp191Ter	p.W191*	ENST00000338641	NM_000268.3	191	tGg/tAg																																																																														
BAP1	0	MSKCC	GRCh37	3	52440359	52440366	+	protein_altering_variant	In_Frame_Del	DEL	CATCAGGT	CATCAGGT	TA			P-0017625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	378	549	2	ENST00000460680.1:c.686_693delACCTGATGinsTA	p.Asn229_Met231delinsIle	p.N229_M231delinsI	ENST00000460680	NM_004656.3	229	aACCTGATG/aTA																																																																														
BAP1	0	MSKCC	GRCh37	3	52441465	52441465	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	430	584	0	ENST00000460680.1:c.387T>A	p.Tyr129Ter	p.Y129*	ENST00000460680	NM_004656.3	129	taT/taA																																																																														
SMO	0	MSKCC	GRCh37	7	128845124	128845124	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1233	436	823	2	ENST00000249373.3:c.618G>A	p.Trp206Ter	p.W206*	ENST00000249373	NM_005631.4	206	tgG/tgA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	134	331	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	145	374	0	ENST00000269305.4:c.475del	p.Ala159ProfsTer11	p.A159Pfs*11	ENST00000269305	NM_001126112.2	159	Gcc/cc																																																																														
NSD1	0	MSKCC	GRCh37	5	176638185	176638185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	51	324	0	ENST00000439151.2:c.2785A>G	p.Thr929Ala	p.T929A	ENST00000439151	NM_022455.4	929	Act/Gct																																																																														
PARK2	0	MSKCC	GRCh37	6	162206938	162206938	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	21	203	0	ENST00000366898.1:c.737G>T	p.Ser246Ile	p.S246I	ENST00000366898	NM_004562.2	246	aGc/aTc																																																																														
SMO	0	MSKCC	GRCh37	7	128851600	128851600	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	78	410	0	ENST00000249373.3:c.1925T>G	p.Val642Gly	p.V642G	ENST00000249373	NM_005631.4	642	gTg/gGg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495796	56495796	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	100	296	0	ENST00000267101.3:c.3986G>A	p.Trp1329Ter	p.W1329*	ENST00000267101	NM_001982.3	1329	tGg/tAg																																																																														
FLT4	0	MSKCC	GRCh37	5	180048253	180048253	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	90	327	0	ENST00000261937.6:c.2021-1G>T		p.X674_splice	ENST00000261937	NM_182925.4	674																																																																															
EGFR	0	MSKCC	GRCh37	7	55242466	55242487	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCAACATCTC	GAATTAAGAGAAGCAACATCTC	CTCT			P-0017627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	155	330	1	ENST00000275493.2:c.2236_2257delGAATTAAGAGAAGCAACATCTCinsCTCT	p.Glu746_Pro753delinsLeuSer	p.E746_P753delinsLS	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCAACATCTCcg/CTCTcg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740325	145740328	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	-			P-0017627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	87	352	0	ENST00000428558.2:c.1612_1615delGATG	p.Asp538ThrfsTer19	p.D538Tfs*19	ENST00000428558	NM_004260.3	538	GATGac/ac																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	405	451	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	372	451	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
TSC2	0	MSKCC	GRCh37	16	2104298	2104298	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	337	370	0	ENST00000219476.3:c.338G>A	p.Gly113Asp	p.G113D	ENST00000219476	NM_000548.3	113	gGc/gAc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99172166	99172166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	420	654	0	ENST00000074304.5:c.1732A>G	p.Ser578Gly	p.S578G	ENST00000074304	NM_001134224.1	578	Agc/Ggc																																																																														
ATR	0	MSKCC	GRCh37	3	142180781	142180781	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	191	353	0	ENST00000350721.4:c.7192+1G>A		p.X2398_splice	ENST00000350721	NM_001184.3	2398																																																																															
TP63	0	MSKCC	GRCh37	3	189456558	189456558	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	311	324	0	ENST00000264731.3:c.319A>G	p.Met107Val	p.M107V	ENST00000264731	NM_003722.4	107	Atg/Gtg																																																																														
FAT1	0	MSKCC	GRCh37	4	187518254	187518254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	87	161	0	ENST00000441802.2:c.12440G>T	p.Gly4147Val	p.G4147V	ENST00000441802	NM_005245.3	4147	gGc/gTc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36231813	36231813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	184	579	0	ENST00000300305.3:c.571A>G	p.Arg191Gly	p.R191G	ENST00000300305		191	Aga/Gga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	124	470	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
ATM	0	MSKCC	GRCh37	11	108153485	108153485	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	75	355	0	ENST00000278616.4:c.3627del	p.Phe1209LeufsTer6	p.F1209Lfs*6	ENST00000278616	NM_000051.3	1209	Ttt/tt																																																																														
STK11	0	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	81	539	0	ENST00000326873.7:c.843delG	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862837	9862837	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	92	638	1	ENST00000330684.3:c.2466C>A	p.Tyr822Ter	p.Y822*	ENST00000330684	NM_001134407.1	822	taC/taA																																																																														
CDK12	0	MSKCC	GRCh37	17	37619360	37619360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	15	190	0	ENST00000447079.4:c.1036C>T	p.Pro346Ser	p.P346S	ENST00000447079	NM_015083.1	346	Cca/Tca																																																																														
DOT1L	0	MSKCC	GRCh37	19	2191141	2191141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1289	120	863	0	ENST00000398665.3:c.395C>G	p.Ser132Cys	p.S132C	ENST00000398665	NM_032482.2	132	tCc/tGc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610288	10610288	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	94	745	1	ENST00000171111.5:c.422A>T	p.Tyr141Phe	p.Y141F	ENST00000171111	NM_203500.1	141	tAc/tTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288486	15288486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	32	395	0	ENST00000263388.2:c.4253C>T	p.Ser1418Leu	p.S1418L	ENST00000263388	NM_000435.2	1418	tCg/tTg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910756	29910756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	101	523	0	ENST00000376809.5:c.296G>C	p.Arg99Pro	p.R99P	ENST00000376809	NM_002116.7	99	cGa/cCa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44948987	44948987	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	12	134	0	ENST00000377967.4:c.3549-1G>C		p.X1183_splice	ENST00000377967	NM_021140.2	1183																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0017652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	8	338	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
VHL	0	MSKCC	GRCh37	3	10188200	10188200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	67	418	0	ENST00000256474.2:c.343C>A	p.His115Asn	p.H115N	ENST00000256474	NM_000551.3	115	Cac/Aac																																																																														
NF1	0	MSKCC	GRCh37	17	29684347	29684358	+	inframe_deletion	In_Frame_Del	DEL	GCAGAGGCCAGT	GCAGAGGCCAGT	-			P-0017652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	41	521	0	ENST00000358273.4:c.7931_7942delCAGAGGCCAGTG	p.Ala2644_Ser2647del	p.A2644_S2647del	ENST00000358273	NM_001042492.2	2644	GCAGAGGCCAGT/-																																																																														
INSR	0	MSKCC	GRCh37	19	7152935	7152935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	78	298	0	ENST00000302850.5:c.2033T>C	p.Leu678Pro	p.L678P	ENST00000302850	NM_000208.2	678	cTg/cCg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52712525	52712525	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	106	423	0	ENST00000394830.3:c.227delC	p.Pro76GlnfsTer19	p.P76Qfs*19	ENST00000394830	NM_018313.4	76	cCa/ca																																																																														
RAD21	0	MSKCC	GRCh37	8	117878961	117878961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	95	526	0	ENST00000297338.2:c.8A>G	p.Tyr3Cys	p.Y3C	ENST00000297338	NM_006265.2	3	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	241	400	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	148	356	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
MED12	0	MSKCC	GRCh37	X	70351933	70351933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	216	646	1	ENST00000374080.3:c.4130C>T	p.Ser1377Phe	p.S1377F	ENST00000374080		1377	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017654-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			794	812	408	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78899272	78899272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017654-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			466	57	296	0	ENST00000306801.3:c.2911G>A	p.Val971Ile	p.V971I	ENST00000306801	NM_020761.2	971	Gtc/Atc																																																																														
SOX9	0	MSKCC	GRCh37	17	70118931	70118932	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017654-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	134	659	0	ENST00000245479.2:c.505dup	p.His169ProfsTer83	p.H169Pfs*83	ENST00000245479	NM_000346.3	168	gac/gaCc																																																																														
RAF1	0	MSKCC	GRCh37	3	12641197	12641197	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017654-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	143	672	0	ENST00000251849.4:c.1101delA	p.Lys367AsnfsTer8	p.K367Nfs*8	ENST00000251849	NM_002880.3	367	aaA/aa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971116	21971119	+	frameshift_variant	Frame_Shift_Del	DEL	GGTC	GGTC	-			P-0017654-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			384	49	224	0	ENST00000304494.5:c.239_242delGACC	p.Arg80ProfsTer65	p.R80Pfs*65	ENST00000304494	NM_000077.4	80	cGACCc/cc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971116	21971119	+	frameshift_variant	Frame_Shift_Del	DEL	GGTC	GGTC	-			P-0017654-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			384	49	224	0	ENST00000304494.5:c.239_242delGACC	p.Arg80ProfsTer65	p.R80Pfs*65	ENST00000304494	NM_000077.4	80	cGACCc/cc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971116	21971119	+	frameshift_variant	Frame_Shift_Del	DEL	GGTC	GGTC	-			P-0017654-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			384	49	224	0	ENST00000304494.5:c.239_242delGACC	p.Arg80ProfsTer65	p.R80Pfs*65	ENST00000304494	NM_000077.4	80	cGACCc/cc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	216	384	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	57	199	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	285	561	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	80	304	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	249	414	0	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																																																														
AMER1	0	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	261	463	1	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212104	5212104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	110	484	0	ENST00000357368.4:c.4927G>A	p.Glu1643Lys	p.E1643K	ENST00000357368	NM_002850.3	1643	Gag/Aag																																																																														
EPHA7	0	MSKCC	GRCh37	6	93953255	93953255	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	156	654	0	ENST00000369303.4:c.2886T>A	p.Asp962Glu	p.D962E	ENST00000369303	NM_004440.3	962	gaT/gaA																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929077	44929077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	204	350	1	ENST00000377967.4:c.2177C>T	p.Thr726Met	p.T726M	ENST00000377967	NM_021140.2	726	aCg/aTg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45375050	45375053	+	stop_gained	Nonsense_Mutation	ONP	GCTG	GCTG	ACTA			P-0017655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	57	231	0	ENST00000262160.6:c.790_793delCAGCinsTAGT	p.GlnPro264TerSer	p.QP264*S	ENST00000262160	NM_005901.5	264	CAGCca/TAGTca																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	118	357	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	25	432	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
GPS2	0	MSKCC	GRCh37	17	7217917	7217917	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0017656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	58	439	0	ENST00000380728.2:c.95-1G>C		p.X32_splice	ENST00000380728		32																																																																															
CDH1	0	MSKCC	GRCh37	16	68842406	68842409	+	protein_altering_variant	In_Frame_Del	DEL	GGGT	GGGT	A			P-0017656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	120	609	0	ENST00000261769.5:c.467_470delGGGTinsA	p.Trp156_Val157delinsTyr	p.W156_V157delinsY	ENST00000261769	NM_004360.3	156	tGGGTt/tAt																																																																														
PALB2	0	MSKCC	GRCh37	16	23641271	23641271	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199743500		P-0017659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	138	379	0	ENST00000261584.4:c.2204C>T	p.Pro735Leu	p.P735L	ENST00000261584	NM_024675.3	735	cCa/cTa																																																																														
SDHA	0	MSKCC	GRCh37	5	226104	226104	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139881415		P-0017659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	215	248	0	ENST00000264932.6:c.563G>A	p.Arg188Gln	p.R188Q	ENST00000264932	NM_004168.2	188	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	128	433	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	201	786	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023855	27023855	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	109	314	0	ENST00000324856.7:c.961C>T	p.Gln321Ter	p.Q321*	ENST00000324856	NM_006015.4	321	Cag/Tag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971104	21971105	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0017660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	61	263	0	ENST00000304494.5:c.253_254delGC	p.Ala85CysfsTer34	p.A85Cfs*34	ENST00000304494	NM_000077.4	85	GCt/t																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971104	21971105	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0017660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	61	263	0	ENST00000304494.5:c.253_254delGC	p.Ala85CysfsTer34	p.A85Cfs*34	ENST00000304494	NM_000077.4	85	GCt/t																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971104	21971105	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0017660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	61	263	0	ENST00000304494.5:c.253_254delGC	p.Ala85CysfsTer34	p.A85Cfs*34	ENST00000304494	NM_000077.4	85	GCt/t																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	196	478	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	188	291	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	103	413	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710663	114710666	+	frameshift_variant	Frame_Shift_Del	DEL	AATG	AATG	-			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	247	785	0	ENST00000543371.1:c.151_154delGAAT	p.Glu51GlnfsTer56	p.E51Qfs*56	ENST00000543371	NM_001198531.1	50	AATGaa/aa																																																																														
TBX3	0	MSKCC	GRCh37	12	115109750	115109750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	223	560	0	ENST00000257566.3:c.2128C>T	p.Leu710Phe	p.L710F	ENST00000257566	NM_016569.3	710	Ctc/Ttc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604740	48604740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	200	416	1	ENST00000342988.3:c.1562C>T	p.Thr521Ile	p.T521I	ENST00000342988	NM_005359.5	521	aCa/aTa																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792844	33792844	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	70	275	0	ENST00000498907.2:c.477delG	p.Ile160SerfsTer158	p.I160Sfs*158	ENST00000498907	NM_004364.3	159	gtG/gt																																																																														
ALK	0	MSKCC	GRCh37	2	29450500	29450500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	239	599	0	ENST00000389048.3:c.2854G>A	p.Gly952Arg	p.G952R	ENST00000389048	NM_004304.4	952	Ggg/Agg																																																																														
KDR	0	MSKCC	GRCh37	4	55955129	55955129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	75	403	0	ENST00000263923.4:c.3416T>C	p.Met1139Thr	p.M1139T	ENST00000263923	NM_002253.2	1139	aTg/aCg																																																																														
KDR	0	MSKCC	GRCh37	4	55971127	55971127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	127	305	0	ENST00000263923.4:c.1670C>A	p.Pro557His	p.P557H	ENST00000263923	NM_002253.2	557	cCt/cAt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	47	596	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
KDR	0	MSKCC	GRCh37	4	55964890	55964890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	23	534	0	ENST00000263923.4:c.2347G>T	p.Val783Phe	p.V783F	ENST00000263923	NM_002253.2	783	Gtc/Ttc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149433943	149433943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	44	624	0	ENST00000286301.3:c.2705C>T	p.Thr902Ile	p.T902I	ENST00000286301	NM_005211.3	902	aCc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	37	437	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	92	351	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0017672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	33	295	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0017672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	63	231	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391076	89391076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	95	575	0	ENST00000336596.2:c.1142G>A	p.Arg381His	p.R381H	ENST00000336596	NM_005233.5	381	cGc/cAc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1184	315	1179	1	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527977	157527978	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	53	219	0	ENST00000346085.5:c.5703dup	p.Lys1902Ter	p.K1902*	ENST00000346085	NM_020732.3	1901	agt/agTt																																																																														
RB1	0	MSKCC	GRCh37	13	49030465	49030466	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0017676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	39	223	0	ENST00000267163.4:c.1941_1942delTT	p.Ser648ThrfsTer4	p.S648Tfs*4	ENST00000267163	NM_000321.2	647	cTT/c																																																																														
TP53	0	MSKCC	GRCh37	17	7578197	7578197	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	93	1035	0	ENST00000269305.4:c.652delG	p.Val218CysfsTer29	p.V218Cfs*29	ENST00000269305	NM_001126112.2	218	Gtg/tg																																																																														
CASP8	0	MSKCC	GRCh37	2	202139632	202139632	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	21	520	0	ENST00000358485.4:c.793A>G	p.Met265Val	p.M265V	ENST00000358485	NM_001080125.1	265	Atg/Gtg																																																																														
RASA1	0	MSKCC	GRCh37	5	86627281	86627281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	52	453	0	ENST00000274376.6:c.656C>G	p.Ser219Ter	p.S219*	ENST00000274376	NM_002890.2	219	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	28	613	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	116	710	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0017678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	348	449	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0017678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	61	567	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																														
TP53	0	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	89	829	0	ENST00000269305.4:c.332T>A	p.Leu111Gln	p.L111Q	ENST00000269305	NM_001126112.2	111	cTg/cAg																																																																														
FAT1	0	MSKCC	GRCh37	4	187530425	187530425	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	74	469	0	ENST00000441802.2:c.10118C>G	p.Ser3373Ter	p.S3373*	ENST00000441802	NM_005245.3	3373	tCa/tGa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375704	118375704	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	86	566	0	ENST00000534358.1:c.9097G>C	p.Gly3033Arg	p.G3033R	ENST00000534358	NM_005933.3	3033	Ggc/Cgc																																																																														
TSHR	0	MSKCC	GRCh37	14	81610030	81610030	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	36	334	0	ENST00000298171.2:c.1628T>G	p.Val543Gly	p.V543G	ENST00000298171	NM_000369.2	543	gTt/gGt																																																																														
STAT3	0	MSKCC	GRCh37	17	40490827	40490827	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	87	461	0	ENST00000264657.5:c.472C>G	p.Leu158Val	p.L158V	ENST00000264657	NM_139276.2	158	Cta/Gta																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210377	36210377	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	59	685	0	ENST00000222270.7:c.370C>T	p.Gln124Ter	p.Q124*	ENST00000222270	NM_014727.1	124	Cag/Tag																																																																														
AXL	0	MSKCC	GRCh37	19	41736888	41736889	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0017678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	101	849	0	ENST00000301178.4:c.605_606delCT	p.Ser202PhefsTer7	p.S202Ffs*7	ENST00000301178	NM_021913.4	201	tcCTct/tcct																																																																														
RASA1	0	MSKCC	GRCh37	5	86645150	86645150	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	140	394	0	ENST00000274376.6:c.1222C>T	p.Gln408Ter	p.Q408*	ENST00000274376	NM_002890.2	408	Cag/Tag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412683	139412683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	290	751	0	ENST00000277541.6:c.1161C>G	p.Cys387Trp	p.C387W	ENST00000277541	NM_017617.3	387	tgC/tgG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	252	826	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	371	684	1	ENST00000269571.5:c.2263_2264delTTinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg																																																																														
FLCN	0	MSKCC	GRCh37	17	17131403	17131403	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	153	466	0	ENST00000285071.4:c.49delC	p.Arg17AlafsTer38	p.R17Afs*38	ENST00000285071	NM_144997.5	17	Cgc/gc																																																																														
CIC	0	MSKCC	GRCh37	19	42793165	42793165	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	404	668	1	ENST00000575354.2:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000575354	NM_015125.3	353	Cga/Tga																																																																														
MSH6	0	MSKCC	GRCh37	2	48027031	48027031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	129	347	0	ENST00000234420.5:c.1909C>T	p.Leu637Phe	p.L637F	ENST00000234420	NM_000179.2	637	Ctc/Ttc																																																																														
PAK7	0	MSKCC	GRCh37	20	9624801	9624801	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	293	396	2	ENST00000353224.5:c.176T>A	p.Ile59Asn	p.I59N	ENST00000353224	NM_177990.2	59	aTc/aAc																																																																														
AR	0	MSKCC	GRCh37	X	66765139	66765139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	52	340	0	ENST00000374690.3:c.151G>A	p.Gly51Ser	p.G51S	ENST00000374690	NM_000044.3	51	Ggc/Agc																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	62	458	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	55	433	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	65	530	2	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	66	441	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	120	528	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																														
CTCF	0	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	39	520	0	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	246	637	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	42	482	3	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
PAX5	0	MSKCC	GRCh37	9	37020754	37020754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	88	545	1	ENST00000358127.4:c.91C>T	p.Arg31Trp	p.R31W	ENST00000358127	NM_001280556.1	31	Cgg/Tgg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	57	323	0	ENST00000263967.3:c.1031T>C	p.Val344Ala	p.V344A	ENST00000263967	NM_006218.2	344	gTg/gCg																																																																														
CYLD	0	MSKCC	GRCh37	16	50826564	50826565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	97	346	0	ENST00000398568.2:c.2296dup	p.Ile766AsnfsTer14	p.I766Nfs*14	ENST00000398568	NM_001042412.1	763	-/A																																																																														
RRAS2	0	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	123	507	1	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
MTOR	0	MSKCC	GRCh37	1	11319430	11319430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	79	514	0	ENST00000361445.4:c.37G>A	p.Ala13Thr	p.A13T	ENST00000361445	NM_004958.3	13	Gcc/Acc																																																																														
RET	0	MSKCC	GRCh37	10	43595976	43595976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	96	672	0	ENST00000355710.3:c.143C>T	p.Thr48Met	p.T48M	ENST00000355710	NM_020975.4	48	aCg/aTg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112397	115112397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	78	466	0	ENST00000257566.3:c.1343G>A	p.Gly448Asp	p.G448D	ENST00000257566	NM_016569.3	448	gGc/gAc																																																																														
MGA	0	MSKCC	GRCh37	15	42034960	42034960	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	100	509	0	ENST00000219905.7:c.4805delC	p.Pro1602LeufsTer5	p.P1602Lfs*5	ENST00000219905	NM_001164273.1	1601	aCc/ac																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748363	43748363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	119	651	0	ENST00000382044.4:c.2443G>A	p.Val815Ile	p.V815I	ENST00000382044	NM_001141980.1	815	Gta/Ata																																																																														
RNF43	0	MSKCC	GRCh37	17	56435057	56435057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	125	520	2	ENST00000407977.2:c.2080C>A	p.Pro694Thr	p.P694T	ENST00000407977		694	Cca/Aca																																																																														
RPTOR	0	MSKCC	GRCh37	17	78820324	78820324	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	51	678	0	ENST00000306801.3:c.1264A>G	p.Met422Val	p.M422V	ENST00000306801	NM_020761.2	422	Atg/Gtg																																																																														
MSH6	0	MSKCC	GRCh37	2	48030647	48030649	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	50	474	0	ENST00000234420.5:c.3264_3266delCTT	p.Phe1088del	p.F1088del	ENST00000234420	NM_000179.2	1087	ccCTTc/ccc																																																																														
BAP1	0	MSKCC	GRCh37	3	52442570	52442570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	40	522	1	ENST00000460680.1:c.175C>T	p.Arg59Trp	p.R59W	ENST00000460680	NM_004656.3	59	Cgg/Tgg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026117	71026117	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	90	404	1	ENST00000318789.4:c.1505T>A	p.Phe502Tyr	p.F502Y	ENST00000318789	NM_032682.5	502	tTc/tAc																																																																														
ATR	0	MSKCC	GRCh37	3	142226913	142226913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	134	525	1	ENST00000350721.4:c.4891C>T	p.Arg1631Cys	p.R1631C	ENST00000350721	NM_001184.3	1631	Cgt/Tgt																																																																														
SOX2	0	MSKCC	GRCh37	3	181430906	181430907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	68	744	0	ENST00000325404.1:c.758_759insA	p.Val254CysfsTer56	p.V254Cfs*56	ENST00000325404	NM_003106.3	253	cct/ccAt																																																																														
NSD1	0	MSKCC	GRCh37	5	176720965	176720965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	53	391	0	ENST00000439151.2:c.6596G>A	p.Arg2199His	p.R2199H	ENST00000439151	NM_022455.4	2199	cGt/cAt																																																																														
EGFR	0	MSKCC	GRCh37	7	55259485	55259485	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148934350		P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	72	518	0	ENST00000275493.2:c.2543C>T	p.Pro848Leu	p.P848L	ENST00000275493	NM_005228.3	848	cCg/cTg																																																																														
KLF4	0	MSKCC	GRCh37	9	110248085	110248085	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	47	459	0	ENST00000374672.4:c.1387C>T	p.Arg463Ter	p.R463*	ENST00000374672	NM_004235.4	463	Cga/Tga																																																																														
BCOR	0	MSKCC	GRCh37	X	39933584	39933584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	71	471	0	ENST00000378444.4:c.1015C>T	p.Pro339Ser	p.P339S	ENST00000378444	NM_001123385.1	339	Ccg/Tcg																																																																														
AR	0	MSKCC	GRCh37	X	66766130	66766130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	74	468	0	ENST00000374690.3:c.1142C>A	p.Pro381His	p.P381H	ENST00000374690	NM_000044.3	381	cCc/cAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0017684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	142	370	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
CDKN1B	0	MSKCC	GRCh37	12	12870995	12870995	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	111	341	0	ENST00000228872.4:c.222C>G	p.Tyr74Ter	p.Y74*	ENST00000228872	NM_004064.3	74	taC/taG																																																																														
CBFB	0	MSKCC	GRCh37	16	67100702	67100702	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	164	489	0	ENST00000412916.2:c.399+1G>A		p.X133_splice	ENST00000412916		133																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	110	597	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	265	664	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881049	37881049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	263	629	1	ENST00000269571.5:c.2378C>T	p.Thr793Met	p.T793M	ENST00000269571		793	aCg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	360	650	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	185	344	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	185	344	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021721	31021721	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0017687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	153	484	0	ENST00000375687.4:c.1719+1G>T		p.X573_splice	ENST00000375687	NM_015338.5	573																																																																															
GATA3	0	MSKCC	GRCh37	10	8106006	8106006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	141	448	2	ENST00000346208.3:c.826C>T	p.Arg276Ter	p.R276*	ENST00000346208		276	Cga/Tga																																																																														
PRKD1	0	MSKCC	GRCh37	14	30396486	30396486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	288	533	0	ENST00000331968.5:c.233G>A	p.Arg78His	p.R78H	ENST00000331968	NM_002742.2	78	cGc/cAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187584747	187584751	+	frameshift_variant	Frame_Shift_Del	DEL	GATCT	GATCT	-			P-0017687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	100	357	0	ENST00000441802.2:c.3282_3286delAGATC	p.Asp1095ThrfsTer4	p.D1095Tfs*4	ENST00000441802	NM_005245.3	1094	tcAGATCga/tcga																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178662	56178662	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	59	266	0	ENST00000399503.3:c.3635A>G	p.Asn1212Ser	p.N1212S	ENST00000399503	NM_005921.1	1212	aAt/aGt																																																																														
NSD1	0	MSKCC	GRCh37	5	176637776	176637776	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	319	755	0	ENST00000439151.2:c.2376C>A	p.Cys792Ter	p.C792*	ENST00000439151	NM_022455.4	792	tgC/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7578372	7578372	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0017692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	54	421	0	ENST00000269305.4:c.558delT	p.Asp186GlufsTer61	p.D186Efs*61	ENST00000269305	NM_001126112.2	186	gaT/ga																																																																														
CDH1	0	MSKCC	GRCh37	16	68847225	68847225	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	63	455	0	ENST00000261769.5:c.1147C>T	p.Gln383Ter	p.Q383*	ENST00000261769	NM_004360.3	383	Cag/Tag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52621398	52621398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	77	451	0	ENST00000394830.3:c.3019C>G	p.Leu1007Val	p.L1007V	ENST00000394830	NM_018313.4	1007	Cta/Gta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101402	27101402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	102	497	2	ENST00000324856.7:c.4689del	p.Met1564Ter	p.M1564*	ENST00000324856	NM_006015.4	1562	Ccc/cc																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	95	446	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	100	480	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	131	616	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	159	721	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
JAK1	0	MSKCC	GRCh37	1	65325924	65325924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	99	520	0	ENST00000342505.4:c.1198G>A	p.Glu400Lys	p.E400K	ENST00000342505	NM_002227.2	400	Gag/Aag																																																																														
RAD52	0	MSKCC	GRCh37	12	1025982	1025982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	76	446	0	ENST00000358495.3:c.548C>A	p.Pro183His	p.P183H	ENST00000358495	NM_134424.2	183	cCt/cAt																																																																														
FLT4	0	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	86	833	1	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	75	648	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																																																														
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	124	699	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga																																																																														
CIC	0	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	101	842	1	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																														
SPEN	0	MSKCC	GRCh37	1	16260214	16260214	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	61	381	0	ENST00000375759.3:c.7484delC	p.Pro2495LeufsTer4	p.P2495Lfs*4	ENST00000375759	NM_015001.2	2493	agC/ag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	78	503	6	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
B2M	0	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	63	221	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
CASP8	0	MSKCC	GRCh37	2	202141632	202141632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	148	664	0	ENST00000358485.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000358485	NM_001080125.1	307	cGg/cAg																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257102	19257102	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	71	649	0	ENST00000162023.5:c.861delC	p.Ala288ProfsTer?	p.A288Pfs*?	ENST00000162023		287	ccC/cc																																																																														
FOXO1	0	MSKCC	GRCh37	13	41239933	41239933	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	13	92	1	ENST00000379561.5:c.417delC	p.Ala140ProfsTer193	p.A140Pfs*193	ENST00000379561	NM_002015.3	139	ccC/cc																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	89	666	1	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
FGF4	0	MSKCC	GRCh37	11	69588173	69588173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	93	682	0	ENST00000168712.1:c.525delC	p.Gly176AlafsTer6	p.G176Afs*6	ENST00000168712	NM_002007.2	175	ccC/cc																																																																														
JAK3	0	MSKCC	GRCh37	19	17954604	17954604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	108	870	0	ENST00000458235.1:c.290T>C	p.Val97Ala	p.V97A	ENST00000458235	NM_000215.3	97	gTc/gCc																																																																														
ATM	0	MSKCC	GRCh37	11	108206575	108206575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138526014		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	88	405	0	ENST00000278616.4:c.8155C>T	p.Arg2719Cys	p.R2719C	ENST00000278616	NM_000051.3	2719	Cgt/Tgt																																																																														
SOX9	0	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	82	658	2	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																																																														
YES1	0	MSKCC	GRCh37	18	745962	745963	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	109	627	0	ENST00000314574.4:c.559_560delAG	p.Ser187Ter	p.S187*	ENST00000314574	NM_005433.3	187	AGt/t																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991709	72991711	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	46	346	1	ENST00000268489.5:c.2334_2336delTGC	p.Ala784del	p.A784del	ENST00000268489	NM_006885.3	778	gcTGCg/gcg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885550	111885550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	87	682	3	ENST00000341259.2:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000341259	NM_005475.2	443	Cgc/Tgc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741406	17741406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	125	976	2	ENST00000250003.3:c.77C>T	p.Thr26Met	p.T26M	ENST00000250003	NM_002478.4	26	aCg/aTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	92	627	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	92	734	1	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	107	603	1	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091782	29091782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	113	739	1	ENST00000328354.6:c.1175C>T	p.Ala392Val	p.A392V	ENST00000328354	NM_007194.3	392	gCg/gTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3777990	3777990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	157	1092	0	ENST00000262367.5:c.7058G>A	p.Arg2353Gln	p.R2353Q	ENST00000262367	NM_004380.2	2353	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	126	905	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
SDHB	0	MSKCC	GRCh37	1	17349192	17349192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	78	536	0	ENST00000375499.3:c.676T>G	p.Phe226Val	p.F226V	ENST00000375499	NM_003000.2	226	Ttc/Gtc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101068	27101068	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	117	807	1	ENST00000324856.7:c.4354delC	p.Gln1452ArgfsTer29	p.Q1452Rfs*29	ENST00000324856	NM_006015.4	1450	ggC/gg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106459	27106459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	116	636	0	ENST00000324856.7:c.6070C>T	p.Arg2024Trp	p.R2024W	ENST00000324856	NM_006015.4	2024	Cgg/Tgg																																																																														
NRAS	0	MSKCC	GRCh37	1	115251276	115251276	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	54	400	0	ENST00000369535.4:c.451-1G>T		p.X151_splice	ENST00000369535	NM_002524.4	151																																																																															
FH	0	MSKCC	GRCh37	1	241669439	241669439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	97	426	0	ENST00000366560.3:c.768delA	p.Lys256AsnfsTer4	p.K256Nfs*4	ENST00000366560	NM_000143.3	256	aaA/aa																																																																														
GATA3	0	MSKCC	GRCh37	10	8097650	8097650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	30	318	0	ENST00000346208.3:c.32T>C	p.Val11Ala	p.V11A	ENST00000346208		11	gTg/gCg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71936099	71936099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	41	165	1	ENST00000298229.2:c.71G>A	p.Arg24His	p.R24H	ENST00000298229	NM_001567.3	24	cGc/cAc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	117	1010	3	ENST00000298229.2:c.2927dupC	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118307537	118307537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	131	798	1	ENST00000534358.1:c.310G>A	p.Ala104Thr	p.A104T	ENST00000534358	NM_005933.3	104	Gcc/Acc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118360525	118360525	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	119	567	0	ENST00000534358.1:c.4498A>G	p.Lys1500Glu	p.K1500E	ENST00000534358	NM_005933.3	1500	Aag/Gag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421586	49421586	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	99	505	0	ENST00000301067.7:c.14643G>T	p.Gln4881His	p.Q4881H	ENST00000301067	NM_003482.3	4881	caG/caT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49422910	49422910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	224	684	4	ENST00000301067.7:c.14185C>T	p.Arg4729Trp	p.R4729W	ENST00000301067	NM_003482.3	4729	Cgg/Tgg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	137	801	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
GLI1	0	MSKCC	GRCh37	12	57858943	57858943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	117	720	1	ENST00000228682.2:c.439C>T	p.Pro147Ser	p.P147S	ENST00000228682	NM_005269.2	147	Cct/Tct																																																																														
LATS2	0	MSKCC	GRCh37	13	21553853	21553853	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs181062581		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	122	707	0	ENST00000382592.4:c.2749A>G	p.Thr917Ala	p.T917A	ENST00000382592	NM_014572.2	917	Act/Gct																																																																														
FLT1	0	MSKCC	GRCh37	13	28959074	28959074	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	113	509	1	ENST00000282397.4:c.2064delC	p.Glu689SerfsTer21	p.E689Sfs*21	ENST00000282397	NM_002019.4	688	ccC/cc																																																																														
DICER1	0	MSKCC	GRCh37	14	95595947	95595947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	116	562	0	ENST00000343455.3:c.596G>A	p.Cys199Tyr	p.C199Y	ENST00000343455	NM_177438.2	199	tGt/tAt																																																																														
AXIN1	0	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	88	607	2	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																															
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	92	657	3	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																														
TRAF7	0	MSKCC	GRCh37	16	2225603	2225603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	93	680	0	ENST00000326181.6:c.1606G>T	p.Gly536Cys	p.G536C	ENST00000326181	NM_032271.2	536	Ggc/Tgc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15971381	15971381	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	154	663	0	ENST00000268712.3:c.4568delC	p.Pro1523LeufsTer20	p.P1523Lfs*20	ENST00000268712	NM_006311.3	1523	cCt/ct																																																																														
NF1	0	MSKCC	GRCh37	17	29550566	29550566	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	113	471	0	ENST00000358273.4:c.1826A>T	p.Lys609Ile	p.K609I	ENST00000358273	NM_001042492.2	609	aAa/aTa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868595	37868595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	75	554	0	ENST00000269571.5:c.1042G>C	p.Glu348Gln	p.E348Q	ENST00000269571		348	Gag/Cag																																																																														
STAT5B	0	MSKCC	GRCh37	17	40370173	40370173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	95	763	0	ENST00000293328.3:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000293328	NM_012448.3	389	Cgc/Tgc																																																																														
RNF43	0	MSKCC	GRCh37	17	56448271	56448271	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	247	594	0	ENST00000407977.2:c.375+1G>A		p.X125_splice	ENST00000407977		125																																																																															
DOT1L	0	MSKCC	GRCh37	19	2216482	2216482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	104	722	5	ENST00000398665.3:c.2126C>T	p.Pro709Leu	p.P709L	ENST00000398665	NM_032482.2	709	cCg/cTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212166	5212166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	88	777	0	ENST00000357368.4:c.4865C>T	p.Thr1622Met	p.T1622M	ENST00000357368	NM_002850.3	1622	aCg/aTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223120	5223120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	94	889	1	ENST00000357368.4:c.2683G>A	p.Val895Met	p.V895M	ENST00000357368	NM_002850.3	895	Gtg/Atg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5286135	5286135	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	72	687	1	ENST00000357368.4:c.17delG	p.Gly6AlafsTer59	p.G6Afs*59	ENST00000357368	NM_002850.3	6	gGc/gc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144491	11144491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	108	746	2	ENST00000344626.4:c.3823G>A	p.Ala1275Thr	p.A1275T	ENST00000344626	NM_003072.3	1275	Gcc/Acc																																																																														
BRD4	0	MSKCC	GRCh37	19	15350041	15350041	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	123	830	0	ENST00000263377.2:c.3611G>C	p.Ser1204Thr	p.S1204T	ENST00000263377	NM_058243.2	1204	aGc/aCc																																																																														
BRD4	0	MSKCC	GRCh37	19	15353959	15353959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	25	222	1	ENST00000263377.2:c.2921C>T	p.Pro974Leu	p.P974L	ENST00000263377	NM_058243.2	974	cCg/cTg																																																																														
UPF1	0	MSKCC	GRCh37	19	18964138	18964138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	112	610	0	ENST00000262803.5:c.1135C>A	p.His379Asn	p.H379N	ENST00000262803	NM_002911.3	379	Cac/Aac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36219934	36219934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	79	633	3	ENST00000222270.7:c.4736G>A	p.Arg1579His	p.R1579H	ENST00000222270	NM_014727.1	1579	cGt/cAt																																																																														
AXL	0	MSKCC	GRCh37	19	41745213	41745213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	85	554	2	ENST00000301178.4:c.1279C>T	p.Arg427Cys	p.R427C	ENST00000301178	NM_021913.4	427	Cgc/Tgc																																																																														
ERF	0	MSKCC	GRCh37	19	42754588	42754589	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	92	749	0	ENST00000222329.4:c.151dup	p.Asp51GlyfsTer11	p.D51Gfs*11	ENST00000222329	NM_006494.2	51	gac/gGac																																																																														
BBC3	0	MSKCC	GRCh37	19	47731468	47731468	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	29	177	0	ENST00000449228.1:c.324delG	p.Phe109SerfsTer120	p.F109Sfs*120	ENST00000449228	NM_001127240.2	108	ggG/gg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25967087	25967087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	80	468	0	ENST00000435504.4:c.2119G>T	p.Gly707Trp	p.G707W	ENST00000435504		707	Ggg/Tgg																																																																														
MSH2	0	MSKCC	GRCh37	2	47702211	47702211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	115	622	0	ENST00000233146.2:c.1807G>A	p.Asp603Asn	p.D603N	ENST00000233146	NM_000251.2	603	Gat/Aat																																																																														
ERCC3	0	MSKCC	GRCh37	2	128044449	128044449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201840181		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	107	621	1	ENST00000285398.2:c.1172G>A	p.Arg391Gln	p.R391Q	ENST00000285398	NM_000122.1	391	cGg/cAg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212426801	212426801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	106	527	0	ENST00000342788.4:c.2314A>G	p.Met772Val	p.M772V	ENST00000342788	NM_005235.2	772	Atg/Gtg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31386361	31386361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	79	570	1	ENST00000328111.2:c.1586C>T	p.Pro529Leu	p.P529L	ENST00000328111	NM_006892.3	529	cCg/cTg																																																																														
SRC	0	MSKCC	GRCh37	20	36026126	36026126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	54	800	1	ENST00000358208.4:c.728G>A	p.Arg243His	p.R243H	ENST00000358208		243	cGc/cAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790090	40790090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	78	593	0	ENST00000373198.4:c.2641delC	p.Arg881GlyfsTer20	p.R881Gfs*20	ENST00000373198	NM_133170.3	881	Cgg/gg																																																																														
ERG	0	MSKCC	GRCh37	21	39817486	39817486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	108	636	2	ENST00000288319.7:c.77C>A	p.Pro26Gln	p.P26Q	ENST00000288319	NM_182918.3	26	cCa/cAa																																																																														
RAC2	0	MSKCC	GRCh37	22	37628864	37628864	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151307781		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	98	738	0	ENST00000249071.6:c.202C>T	p.Arg68Trp	p.R68W	ENST00000249071	NM_002872.4	68	Cgg/Tgg																																																																														
MST1R	0	MSKCC	GRCh37	3	49936019	49936019	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	140	782	0	ENST00000296474.3:c.1651A>G	p.Met551Val	p.M551V	ENST00000296474	NM_002447.2	551	Atg/Gtg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807480	1807480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	33	664	0	ENST00000260795.2:c.1649C>A	p.Pro550His	p.P550H	ENST00000260795		550	cCc/cAc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957837	1957837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	122	691	0	ENST00000382891.5:c.2803C>T	p.Arg935Ter	p.R935*	ENST00000382891	NM_133335.3	935	Cga/Tga																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41749443	41749443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	72	491	0	ENST00000226382.2:c.352G>A	p.Ala118Thr	p.A118T	ENST00000226382	NM_003924.3	118	Gcg/Acg																																																																														
TERT	0	MSKCC	GRCh37	5	1293440	1293440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	91	572	0	ENST00000310581.5:c.1561C>T	p.Arg521Cys	p.R521C	ENST00000310581	NM_198253.2	521	Cgc/Tgc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31422913	31422913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	188	822	0	ENST00000344624.3:c.3400G>T	p.Gly1134Ter	p.G1134*	ENST00000344624		1134	Gga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112176794	112176794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	104	465	0	ENST00000257430.4:c.5503A>G	p.Arg1835Gly	p.R1835G	ENST00000257430	NM_000038.5	1835	Aga/Gga																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149500766	149500766	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	69	465	1	ENST00000261799.4:c.2463+1G>A		p.X821_splice	ENST00000261799	NM_002609.3	821																																																																															
FGFR4	0	MSKCC	GRCh37	5	176516607	176516607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	122	674	1	ENST00000292408.4:c.4C>T	p.Arg2Trp	p.R2W	ENST00000292408	NM_213647.1	2	Cgg/Tgg																																																																														
FYN	0	MSKCC	GRCh37	6	112017501	112017501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	95	470	0	ENST00000368678.4:c.1012G>A	p.Val338Ile	p.V338I	ENST00000368678		338	Gtc/Atc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157521848	157521848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	72	396	0	ENST00000346085.5:c.4120C>T	p.Arg1374Cys	p.R1374C	ENST00000346085	NM_020732.3	1374	Cgc/Tgc																																																																														
PMS2	0	MSKCC	GRCh37	7	6042213	6042213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	151	811	0	ENST00000265849.7:c.408G>A	p.Met136Ile	p.M136I	ENST00000265849	NM_000535.5	136	atG/atA																																																																														
RAC1	0	MSKCC	GRCh37	7	6441977	6441977	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	106	668	0	ENST00000356142.4:c.536T>C	p.Leu179Pro	p.L179P	ENST00000356142	NM_018890.3	179	cTc/cCc																																																																														
JAK2	0	MSKCC	GRCh37	9	5072515	5072515	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	89	465	0	ENST00000381652.3:c.1668delT	p.Phe556LeufsTer12	p.F556Lfs*12	ENST00000381652	NM_004972.3	555	acT/ac																																																																														
ABL1	0	MSKCC	GRCh37	9	133760012	133760012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	147	933	0	ENST00000318560.5:c.2335A>G	p.Thr779Ala	p.T779A	ENST00000318560	NM_005157.4	779	Aca/Gca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401237	139401237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	111	768	3	ENST00000277541.6:c.3832G>A	p.Ala1278Thr	p.A1278T	ENST00000277541	NM_017617.3	1278	Gcc/Acc																																																																														
EGFL7	0	MSKCC	GRCh37	9	139564768	139564768	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	116	748	0	ENST00000308874.7:c.561delC	p.Asn188ThrfsTer9	p.N188Tfs*9	ENST00000308874		186	gCc/gc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44918535	44918535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	93	525	0	ENST00000377967.4:c.1018G>A	p.Ala340Thr	p.A340T	ENST00000377967	NM_021140.2	340	Gcc/Acc																																																																														
RBM10	0	MSKCC	GRCh37	X	47041603	47041603	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	100	758	0	ENST00000329236.7:c.1597delG	p.Glu533ArgfsTer93	p.E533Rfs*93	ENST00000329236	NM_001204466.1	532	Ggg/gg																																																																														
ARAF	0	MSKCC	GRCh37	X	47424712	47424712	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	69	722	1	ENST00000377045.4:c.520C>A	p.Arg174Ser	p.R174S	ENST00000377045	NM_001654.4	174	Cgc/Agc																																																																														
GATA1	0	MSKCC	GRCh37	X	48649712	48649712	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149753411		P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	108	779	2	ENST00000376670.3:c.196G>A	p.Ala66Thr	p.A66T	ENST00000376670	NM_002049.3	66	Gct/Act																																																																														
KDM5C	0	MSKCC	GRCh37	X	53241076	53241076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	127	611	0	ENST00000375401.3:c.1135C>T	p.Pro379Ser	p.P379S	ENST00000375401	NM_004187.3	379	Ccc/Tcc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53243926	53243926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	100	913	0	ENST00000375401.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000375401	NM_004187.3	356	cCt/cTt																																																																														
MED12	0	MSKCC	GRCh37	X	70345240	70345240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	111	700	3	ENST00000374080.3:c.2266G>A	p.Val756Ile	p.V756I	ENST00000374080		756	Gta/Ata																																																																														
TSHR	0	MSKCC	GRCh37	14	81562999	81562999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	130	509	1	ENST00000298171.2:c.562G>A	p.Gly188Ser	p.G188S	ENST00000298171	NM_000369.2	188	Ggc/Agc																																																																														
CIC	0	MSKCC	GRCh37	19	42798827	42798836	+	frameshift_variant	Frame_Shift_Ins	INS	CTGGACCAGC	CTGGACCAGC	TGGTCATGCAG			P-0017697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	112	757	0	ENST00000575354.2:c.4399_4408delCTGGACCAGCinsTGGTCATGCAG	p.Leu1467TrpfsTer47	p.L1467Wfs*47	ENST00000575354	NM_015125.3	1467	CTGGACCAGCgc/TGGTCATGCAGgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0017701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	158	359	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160837	56161470	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTAAATTTAGATCAATTAATTCCCTATAGTAAACAAAGTTAAACTTAAAATGTATTTTAGGCTAATATTTTTCTTTAATGTATTTATGAGGTTTTACTATCTTAATATACCATAGAATAGAAATTTGATCTATTTAATAAATTCAGTGAAAATGAAAGATTAAATCATGGAAATAGCTGTAGATTTTTCTTATATACAAAGATAATGAAGAATATGAATTAATAGAAACTTTAGTATAAAAAGTTGGAAATATTGTAAAAGTGATAAATTTAGAAGTTCTTGTGAACCACAGATGTATTAACCTATAGGTTTTCTTTTTAACTCTTTAGAACTGCAGCTGTGCACGTGGAACATTCTGTATTCATCTGCTATTTGTGATGCTCCGGGTGTTTCAACTAGAACCTTCAGACCCAATGTTATGGAGAAAAACTTTAAAGAATTTTGAGGTAGTTTTTAATAAATGCTTAGAGTAAAATTGTTAGCATATTCTTAGGATATATTCTTAAAATTTATCCTTCACTAAATTTAGGCAGTGACCATTTTAAAGGTGTGAAGGTATGTAAGAATTAGTTGATGCTTATAAATAGTTCTCATGAGATATTTACTAAACTTTTTCTTCTAGCTTGAAAAAAA	CTTAAATTTAGATCAATTAATTCCCTATAGTAAACAAAGTTAAACTTAAAATGTATTTTAGGCTAATATTTTTCTTTAATGTATTTATGAGGTTTTACTATCTTAATATACCATAGAATAGAAATTTGATCTATTTAATAAATTCAGTGAAAATGAAAGATTAAATCATGGAAATAGCTGTAGATTTTTCTTATATACAAAGATAATGAAGAATATGAATTAATAGAAACTTTAGTATAAAAAGTTGGAAATATTGTAAAAGTGATAAATTTAGAAGTTCTTGTGAACCACAGATGTATTAACCTATAGGTTTTCTTTTTAACTCTTTAGAACTGCAGCTGTGCACGTGGAACATTCTGTATTCATCTGCTATTTGTGATGCTCCGGGTGTTTCAACTAGAACCTTCAGACCCAATGTTATGGAGAAAAACTTTAAAGAATTTTGAGGTAGTTTTTAATAAATGCTTAGAGTAAAATTGTTAGCATATTCTTAGGATATATTCTTAAAATTTATCCTTCACTAAATTTAGGCAGTGACCATTTTAAAGGTGTGAAGGTATGTAAGAATTAGTTGATGCTTATAAATAGTTCTCATGAGATATTTACTAAACTTTTTCTTCTAGCTTGAAAAAAA	-			P-0017701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	43	97	0	ENST00000399503.3:c.1153-185_1035+77delTTAAATTTAGATCAATTAATTCCCTATAGTAAACAAAGTTAAACTTAAAATGTATTTTAGGCTAATATTTTTCTTTAATGTATTTATGAGGTTTTACTATCTTAATATACCATAGAATAGAAATTTGATCTATTTAATAAATTCAGTGAAAATGAAAGATTAAATCATGGAAATAGCTGTAGATTTTTCTTATATACAAAGATAATGAAGAATATGAATTAATAGAAACTTTAGTATAAAAAGTTGGAAATATTGTAAAAGTGATAAATTTAGAAGTTCTTGTGAACCACAGATGTATTAACCTATAGGTTTTCTTTTTAACTCTTTAGAACTGCAGCTGTGCACGTGGAACATTCTGTATTCATCTGCTATTTGTGATGCTCCGGGTGTTTCAACTAGAACCTTCAGACCCAATGTTATGGAGAAAAACTTTAAAGAATTTTGAGGTAGTTTTTAATAAATGCTTAGAGTAAAATTGTTAGCATATTCTTAGGATATATTCTTAAAATTTATCCTTCACTAAATTTAGGCAGTGACCATTTTAAAGGTGTGAAGGTATGTAAGAATTAGTTGATGCTTATAAATAGTTCTCATGAGATATTTACTAAACTTTTTCTTCTAGCTTGAAAAAAAC		p.X385_splice	ENST00000399503	NM_005921.1	385																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	157	602	0				ENST00000310581	NM_198253.2																																																																																
HRAS	0	MSKCC	GRCh37	11	534285	534286	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	243	599	1	ENST00000311189.7:c.37_38delGGinsAA	p.Gly13Asn	p.G13N	ENST00000311189		13	GGt/AAt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351737	89351737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	186	839	0	ENST00000301030.4:c.1213C>T	p.Arg405Cys	p.R405C	ENST00000301030	NM_001256183.1	405	Cgt/Tgt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41400190	41400190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	134	553	0	ENST00000373198.4:c.569G>A	p.Arg190Lys	p.R190K	ENST00000373198	NM_133170.3	190	aGa/aAa																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20152085	20152085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	169	294	1	ENST00000379607.5:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000379607	NM_001412.3	82	cGa/cAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561430	9561430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	150	504	0	ENST00000353224.5:c.352G>A	p.Gly118Ser	p.G118S	ENST00000353224	NM_177990.2	118	Ggc/Agc																																																																														
NF1	0	MSKCC	GRCh37	17	29560043	29560043	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	101	323	0	ENST00000358273.4:c.3520C>T	p.Gln1174Ter	p.Q1174*	ENST00000358273	NM_001042492.2	1174	Cag/Tag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465542	8465542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	379	654	0	ENST00000356435.5:c.3638G>A	p.Gly1213Glu	p.G1213E	ENST00000356435		1213	gGa/gAa																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9776092	9776092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	159	647	1	ENST00000377346.4:c.556C>T	p.Pro186Ser	p.P186S	ENST00000377346	NM_005026.3	186	Ccg/Tcg																																																																														
SPEN	0	MSKCC	GRCh37	1	16257963	16257963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	120	482	0	ENST00000375759.3:c.5228C>T	p.Ser1743Phe	p.S1743F	ENST00000375759	NM_015001.2	1743	tCc/tTc																																																																														
JAK1	0	MSKCC	GRCh37	1	65301823	65301823	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	130	377	0	ENST00000342505.4:c.3216T>A	p.His1072Gln	p.H1072Q	ENST00000342505	NM_002227.2	1072	caT/caA																																																																														
MCL1	0	MSKCC	GRCh37	1	150551799	150551799	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	39	191	0	ENST00000369026.2:c.208A>G	p.Thr70Ala	p.T70A	ENST00000369026	NM_021960.4	70	Acg/Gcg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849018	156849018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	140	684	1	ENST00000524377.1:c.1910G>A	p.Gly637Glu	p.G637E	ENST00000524377	NM_002529.3	637	gGg/gAg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258008	123258008	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	125	551	0	ENST00000358487.5:c.1672+1G>A		p.X558_splice	ENST00000358487	NM_000141.4	558																																																																															
KDM5A	0	MSKCC	GRCh37	12	402269	402269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	191	661	0	ENST00000399788.2:c.4522C>T	p.Arg1508Trp	p.R1508W	ENST00000399788	NM_001042603.1	1508	Cgg/Tgg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56486769	56486769	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	179	591	0	ENST00000267101.3:c.1184-1G>A		p.X395_splice	ENST00000267101	NM_001982.3	395																																																																															
GLI1	0	MSKCC	GRCh37	12	57860110	57860110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	176	728	0	ENST00000228682.2:c.850G>A	p.Ala284Thr	p.A284T	ENST00000228682	NM_005269.2	284	Gcc/Acc																																																																														
MDM2	0	MSKCC	GRCh37	12	69218190	69218190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	142	457	0	ENST00000462284.1:c.406G>A	p.Glu136Lys	p.E136K	ENST00000462284	NM_002392.5	136	Gaa/Aaa																																																																														
TBX3	0	MSKCC	GRCh37	12	115109927	115109927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	173	680	1	ENST00000257566.3:c.1951G>A	p.Asp651Asn	p.D651N	ENST00000257566	NM_016569.3	651	Gac/Aac																																																																														
TBX3	0	MSKCC	GRCh37	12	115120798	115120798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	103	519	0	ENST00000257566.3:c.208G>A	p.Gly70Arg	p.G70R	ENST00000257566	NM_016569.3	70	Ggg/Agg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914931	32914931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	120	449	0	ENST00000380152.3:c.6439C>T	p.His2147Tyr	p.H2147Y	ENST00000380152		2147	Cac/Tac																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923476	9923476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	149	571	1	ENST00000330684.3:c.1811C>T	p.Ala604Val	p.A604V	ENST00000330684	NM_001134407.1	604	gCt/gTt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992616	72992616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	92	393	0	ENST00000268489.5:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000268489	NM_006885.3	477	Gaa/Aaa																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7976222	7976222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	89	489	0	ENST00000319144.4:c.1973C>T	p.Pro658Leu	p.P658L	ENST00000319144	NM_001139.2	658	cCg/cTg																																																																														
NF1	0	MSKCC	GRCh37	17	29664492	29664492	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	179	543	1	ENST00000358273.4:c.6535delC	p.Arg2179ValfsTer21	p.R2179Vfs*21	ENST00000358273	NM_001042492.2	2178	ttC/tt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604625	48604626	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	88	260	1	ENST00000342988.3:c.1448-1_1448delGGinsAA		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																															
NFE2L2	0	MSKCC	GRCh37	2	178095607	178095607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	115	415	0	ENST00000397062.3:c.1724C>T	p.Pro575Leu	p.P575L	ENST00000397062	NM_006164.4	575	cCt/cTt																																																																														
BARD1	0	MSKCC	GRCh37	2	215617252	215617252	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	118	415	0	ENST00000260947.4:c.1596T>A	p.Asp532Glu	p.D532E	ENST00000260947	NM_000465.2	532	gaT/gaA																																																																														
PTPRT	0	MSKCC	GRCh37	20	41408926	41408926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	122	482	0	ENST00000373198.4:c.500C>T	p.Ser167Phe	p.S167F	ENST00000373198	NM_133170.3	167	tCc/tTc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46275890	46275890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	169	627	0	ENST00000371998.3:c.3326G>A	p.Gly1109Glu	p.G1109E	ENST00000371998		1109	gGa/gAa																																																																														
MST1R	0	MSKCC	GRCh37	3	49940541	49940541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	140	717	0	ENST00000296474.3:c.502C>T	p.His168Tyr	p.H168Y	ENST00000296474	NM_002447.2	168	Cat/Tat																																																																														
GSK3B	0	MSKCC	GRCh37	3	119545690	119545690	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	118	399	0	ENST00000316626.5:c.1247G>C	p.Gly416Ala	p.G416A	ENST00000316626		416	gGa/gCa																																																																														
FAT1	0	MSKCC	GRCh37	4	187524141	187524141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	159	510	0	ENST00000441802.2:c.11398C>T	p.Pro3800Ser	p.P3800S	ENST00000441802	NM_005245.3	3800	Cct/Tct																																																																														
TERT	0	MSKCC	GRCh37	5	1272338	1272338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	280	754	0	ENST00000310581.5:c.2344G>A	p.Glu782Lys	p.E782K	ENST00000310581	NM_198253.2	782	Gag/Aag																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982036	93982036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	128	362	0	ENST00000369303.4:c.1429G>T	p.Glu477Ter	p.E477*	ENST00000369303	NM_004440.3	477	Gaa/Taa																																																																														
ROS1	0	MSKCC	GRCh37	6	117725525	117725525	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	122	579	1	ENST00000368508.3:c.356G>A	p.Trp119Ter	p.W119*	ENST00000368508	NM_002944.2	119	tGg/tAg																																																																														
CARD11	0	MSKCC	GRCh37	7	2963907	2963907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	161	760	0	ENST00000396946.4:c.1900G>A	p.Glu634Lys	p.E634K	ENST00000396946	NM_032415.4	634	Gag/Aag																																																																														
RAC1	0	MSKCC	GRCh37	7	6441649	6441649	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	182	876	0	ENST00000356142.4:c.496A>G	p.Lys166Glu	p.K166E	ENST00000356142	NM_018890.3	166	Aag/Gag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829887	72829887	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	79	638	0	ENST00000268489.5:c.6694G>T	p.Glu2232Ter	p.E2232*	ENST00000268489	NM_006885.3	2232	Gaa/Taa																																																																														
CDK12	0	MSKCC	GRCh37	17	37618837	37618837	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	197	659	1	ENST00000447079.4:c.513delC	p.Ser171ArgfsTer20	p.S171Rfs*20	ENST00000447079	NM_015083.1	171	agC/ag																																																																														
CDK12	0	MSKCC	GRCh37	17	37673701	37673701	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	149	539	0	ENST00000447079.4:c.2855G>C	p.Cys952Ser	p.C952S	ENST00000447079	NM_015083.1	952	tGt/tCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	155	643	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
POLD1	0	MSKCC	GRCh37	19	50910427	50910427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	105	694	0	ENST00000440232.2:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000440232	NM_002691.3	561	cGg/cAg																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741658	17741658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	140	534	1	ENST00000250003.3:c.329G>A	p.Arg110His	p.R110H	ENST00000250003	NM_002478.4	110	cGc/cAc																																																																														
STAT3	0	MSKCC	GRCh37	17	40476776	40476776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	115	751	2	ENST00000264657.5:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000264657	NM_139276.2	518	cGa/cAa																																																																														
GNA11	0	MSKCC	GRCh37	19	3118992	3118992	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	139	683	0	ENST00000078429.4:c.676A>C	p.Ile226Leu	p.I226L	ENST00000078429	NM_002067.2	226	Atc/Ctc																																																																														
APC	0	MSKCC	GRCh37	5	112175721	112175723	+	frameshift_variant	Frame_Shift_Del	DEL	AGA	AGA	G			P-0017705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	119	349	0	ENST00000257430.4:c.4430_4432delAGAinsG	p.Gln1477ArgfsTer9	p.Q1477Rfs*9	ENST00000257430	NM_000038.5	1477	cAGAgg/cGgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577086	7577087	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0017706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	513	657	0	ENST00000269305.4:c.851_852delCA	p.Thr284ArgfsTer21	p.T284Rfs*21	ENST00000269305	NM_001126112.2	284	aCA/a																																																																														
ARAF	0	MSKCC	GRCh37	X	47422716	47422716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	321	511	0	ENST00000377045.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000377045	NM_001654.4	63	cGa/cAa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399516	139399516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	500	650	2	ENST00000277541.6:c.4627G>A	p.Gly1543Arg	p.G1543R	ENST00000277541	NM_017617.3	1543	Ggg/Agg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8526626	8526626	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0017706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	34	473	0	ENST00000356435.5:c.568+1G>A		p.X190_splice	ENST00000356435		190																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	210	630	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	103	339	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432644	49432644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	245	749	1	ENST00000301067.7:c.8495C>T	p.Ala2832Val	p.A2832V	ENST00000301067	NM_003482.3	2832	gCc/gTc																																																																														
RB1	0	MSKCC	GRCh37	13	49039154	49039154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	28	366	2	ENST00000267163.4:c.2232delC	p.Glu746LysfsTer8	p.E746Kfs*8	ENST00000267163	NM_000321.2	744	atC/at																																																																														
GPS2	0	MSKCC	GRCh37	17	7216789	7216790	+	splice_acceptor_variant	Splice_Site	INS	-	-	TGAGAAAGGAAAAGACAGAGCCAT			P-0017708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	77	397	0	ENST00000380728.2:c.635-25_635-2dup		p.X212_splice	ENST00000380728		212																																																																															
FOXP1	0	MSKCC	GRCh37	3	71026840	71026909	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTTATAAAATTCTTGGTTCTGCGCAATATCTGCTGAATAAGAATCATTGTCCTATTAATTATCACTTT	TTCTTATAAAATTCTTGGTTCTGCGCAATATCTGCTGAATAAGAATCATTGTCCTATTAATTATCACTTT	-			P-0017708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	60	378	0	ENST00000318789.4:c.1349-36_1382delAAAGTGATAATTAATAGGACAATGATTCTTATTCAGCAGATATTGCGCAGAACCAAGAATTTTATAAGAA		p.X450_splice	ENST00000318789	NM_032682.5	450																																																																															
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	67	673	0	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																														
GLI1	0	MSKCC	GRCh37	12	57864183	57864183	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	41	413	0	ENST00000228682.2:c.1660A>C	p.Thr554Pro	p.T554P	ENST00000228682	NM_005269.2	554	Act/Cct																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138403501	138403501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	98	479	0	ENST00000289153.2:c.2281C>A	p.Pro761Thr	p.P761T	ENST00000289153	NM_006219.2	761	Ccc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0017712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	46	476	0				ENST00000310581	NM_198253.2																																																																																
ERBB3	0	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	215	444	1	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923342	9923342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	141	556	0	ENST00000330684.3:c.1945C>G	p.Leu649Val	p.L649V	ENST00000330684	NM_001134407.1	649	Ctg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	64	528	0	ENST00000269305.4:c.712T>A	p.Cys238Ser	p.C238S	ENST00000269305	NM_001126112.2	238	Tgt/Agt																																																																														
ELF3	1999	MSKCC	GRCh37	1	201982157	201982157	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	69	588	0	ENST00000359651.3:c.684del	p.Ser229AlafsTer25	p.S229Afs*25	ENST00000359651		227	ttC/tt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118342460	118342460	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	36	318	0	ENST00000534358.1:c.589delT	p.Ser197ProfsTer3	p.S197Pfs*3	ENST00000534358	NM_005933.3	196	Ttt/tt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118352473	118352476	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0017712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	67	560	0	ENST00000534358.1:c.3680_3683delACAG	p.Asp1227AlafsTer7	p.D1227Afs*7	ENST00000534358	NM_005933.3	1226	aaAGAC/aa																																																																														
IRS2	0	MSKCC	GRCh37	13	110436717	110436717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	64	811	0	ENST00000375856.3:c.1684G>T	p.Asp562Tyr	p.D562Y	ENST00000375856	NM_003749.2	562	Gac/Tac																																																																														
DICER1	0	MSKCC	GRCh37	14	95556982	95556988	+	frameshift_variant	Frame_Shift_Del	DEL	GTAAGTT	GTAAGTT	-			P-0017712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	36	463	0	ENST00000343455.3:c.5616_5622delAACTTAC	p.Tyr1874GlyfsTer9	p.Y1874Gfs*9	ENST00000343455	NM_177438.2	1872	agAACTTAC/ag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32168761	32168761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	80	671	0	ENST00000375023.3:c.4162G>A	p.Asp1388Asn	p.D1388N	ENST00000375023	NM_004557.3	1388	Gat/Aat																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	121	576	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	121	402	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	110	483	2	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	176	508	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781324	3781326	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1288	78	843	1	ENST00000262367.5:c.5039_5041delCCT	p.Ser1680del	p.S1680del	ENST00000262367	NM_004380.2	1680	tCCTtg/ttg																																																																														
IL7R	0	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	83	515	1	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																																																														
JAK1	0	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	85	403	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	101	468	0	ENST00000274335.5:c.1727_1729delCGA	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	169	608	7	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
CARD11	0	MSKCC	GRCh37	7	2983994	2983994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	128	739	0	ENST00000396946.4:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000396946	NM_032415.4	179	cGg/cAg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	141	623	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692980	89692980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	128	569	0	ENST00000371953.3:c.464A>G	p.Tyr155Cys	p.Y155C	ENST00000371953	NM_000314.4	155	tAt/tGt																																																																														
MYC	0	MSKCC	GRCh37	8	128750639	128750639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	116	485	0	ENST00000377970.2:c.176C>T	p.Ala59Val	p.A59V	ENST00000377970	NM_002467.4	59	gCg/gTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	64	475	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
H3F3C	0	MSKCC	GRCh37	12	31945033	31945033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	264	709	0	ENST00000340398.3:c.68C>T	p.Thr23Met	p.T23M	ENST00000340398	NM_001013699.2	23	aCg/aTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419897	41419897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	228	597	1	ENST00000373198.4:c.424G>A	p.Val142Ile	p.V142I	ENST00000373198	NM_133170.3	142	Gtc/Atc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280005	66280005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	51	233	1	ENST00000273854.3:c.1684G>A	p.Val562Met	p.V562M	ENST00000273854	NM_004439.5	562	Gtg/Atg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141487	11141487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	122	640	0	ENST00000344626.4:c.3464G>T	p.Ser1155Ile	p.S1155I	ENST00000344626	NM_003072.3	1155	aGc/aTc																																																																														
RARA	0	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	156	688	3	ENST00000254066.5:c.1319delC	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138431133	138431133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	43	382	0	ENST00000289153.2:c.1316C>T	p.Ala439Val	p.A439V	ENST00000289153	NM_006219.2	439	gCg/gTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	167	843	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031969	26031969	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	56	290	0	ENST00000244661.2:c.320A>G	p.Asp107Gly	p.D107G	ENST00000244661	NM_003537.3	107	gAc/gGc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	88	549	2	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073985	8073985	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	82	395	0	ENST00000377482.5:c.674T>C	p.Val225Ala	p.V225A	ENST00000377482	NM_018948.3	225	gTg/gCg																																																																														
NRAS	0	MSKCC	GRCh37	1	115252251	115252251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	149	479	1	ENST00000369535.4:c.389C>T	p.Ala130Val	p.A130V	ENST00000369535	NM_002524.4	130	gCc/gTc																																																																														
PAK1	0	MSKCC	GRCh37	11	77064630	77064630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	70	597	0	ENST00000356341.3:c.787G>A	p.Val263Met	p.V263M	ENST00000356341	NM_002576.4	263	Gtg/Atg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94203744	94203744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	23	381	3	ENST00000323929.3:c.910G>A	p.Val304Met	p.V304M	ENST00000323929	NM_005591.3	304	Gtg/Atg																																																																														
ETV6	0	MSKCC	GRCh37	12	12022418	12022418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	194	893	1	ENST00000396373.4:c.524C>T	p.Thr175Ile	p.T175I	ENST00000396373	NM_001987.4	175	aCc/aTc																																																																														
POLE	0	MSKCC	GRCh37	12	133257270	133257270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	86	499	0	ENST00000320574.5:c.208G>A	p.Glu70Lys	p.E70K	ENST00000320574	NM_006231.2	70	Gag/Aag																																																																														
LATS2	0	MSKCC	GRCh37	13	21562577	21562577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	26	189	0	ENST00000382592.4:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000382592	NM_014572.2	448	Cgt/Tgt																																																																														
IRS2	0	MSKCC	GRCh37	13	110435306	110435306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	157	370	1	ENST00000375856.3:c.3095C>A	p.Pro1032Gln	p.P1032Q	ENST00000375856	NM_003749.2	1032	cCg/cAg																																																																														
MGA	0	MSKCC	GRCh37	15	42040993	42040993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	122	640	3	ENST00000219905.7:c.5371C>T	p.Pro1791Ser	p.P1791S	ENST00000219905	NM_001164273.1	1791	Cct/Tct																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66774108	66774108	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	220	724	0	ENST00000307102.5:c.584A>G	p.Asn195Ser	p.N195S	ENST00000307102	NM_002755.3	195	aAc/aGc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482864	67482864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	95	373	0	ENST00000327367.4:c.1268G>A	p.Ser423Asn	p.S423N	ENST00000327367	NM_005902.3	423	aGt/aAt																																																																														
CTCF	0	MSKCC	GRCh37	16	67644947	67644978	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAGATGAAGACTGAAGTAATGGAGGGCACA	TTCAGATGAAGACTGAAGTAATGGAGGGCACA	-			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	176	550	0	ENST00000264010.4:c.212_243delTTCAGATGAAGACTGAAGTAATGGAGGGCACA	p.Leu71ArgfsTer58	p.L71Rfs*58	ENST00000264010	NM_006565.3	71	cTTCAGATGAAGACTGAAGTAATGGAGGGCACA/c																																																																														
CTCF	0	MSKCC	GRCh37	16	67654676	67654676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	86	596	0	ENST00000264010.4:c.1163G>A	p.Ser388Asn	p.S388N	ENST00000264010	NM_006565.3	388	aGc/aAc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351075	89351075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	88	630	1	ENST00000301030.4:c.1875G>T	p.Glu625Asp	p.E625D	ENST00000301030	NM_001256183.1	625	gaG/gaT																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11958212	11958212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	55	404	2	ENST00000353533.5:c.122G>A	p.Arg41His	p.R41H	ENST00000353533	NM_003010.3	41	cGc/cAc																																																																														
CDK12	0	MSKCC	GRCh37	17	37682183	37682183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	58	614	0	ENST00000447079.4:c.3374G>A	p.Ser1125Asn	p.S1125N	ENST00000447079	NM_015083.1	1125	aGc/aAc																																																																														
SRSF2	0	MSKCC	GRCh37	17	74733237	74733237	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	80	471	0	ENST00000359995.5:c.6C>A	p.Ser2Arg	p.S2R	ENST00000359995	NM_001195427.1	2	agC/agA																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223023	5223023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	151	669	3	ENST00000357368.4:c.2780C>T	p.Thr927Met	p.T927M	ENST00000357368	NM_002850.3	927	aCg/aTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098540	11098540	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	127	735	0	ENST00000344626.4:c.1062delC	p.Ile355SerfsTer56	p.I355Sfs*56	ENST00000344626	NM_003072.3	353	aCc/ac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141550	11141550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	73	657	0	ENST00000344626.4:c.3527G>A	p.Ser1176Asn	p.S1176N	ENST00000344626	NM_003072.3	1176	aGc/aAc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273304	18273304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	117	344	1	ENST00000222254.8:c.1097C>T	p.Thr366Met	p.T366M	ENST00000222254	NM_005027.3	366	aCg/aTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214106	36214107	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	380	953	0	ENST00000222270.7:c.2934_2935delTG	p.Cys978TrpfsTer16	p.C978Wfs*16	ENST00000222270	NM_014727.1	978	TGt/t																																																																														
XPO1	0	MSKCC	GRCh37	2	61725897	61725897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	58	583	0	ENST00000401558.2:c.670G>A	p.Ala224Thr	p.A224T	ENST00000401558	NM_003400.3	224	Gca/Aca																																																																														
IRS1	0	MSKCC	GRCh37	2	227660715	227660715	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	149	723	0	ENST00000305123.5:c.2740G>C	p.Ala914Pro	p.A914P	ENST00000305123	NM_005544.2	914	Gct/Cct																																																																														
PAK7	0	MSKCC	GRCh37	20	9624859	9624859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	83	494	0	ENST00000353224.5:c.118C>T	p.His40Tyr	p.H40Y	ENST00000353224	NM_177990.2	40	Cac/Tac																																																																														
SRC	0	MSKCC	GRCh37	20	36012709	36012709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	73	162	0	ENST00000358208.4:c.153C>A	p.Ser51Arg	p.S51R	ENST00000358208		51	agC/agA																																																																														
MLH1	0	MSKCC	GRCh37	3	37045933	37045934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACGAAAACAGCTGATGG			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	91	567	0	ENST00000231790.2:c.350_366dup	p.Lys123ArgfsTer19	p.K123Rfs*19	ENST00000231790	NM_000249.3	116	-/ACGAAAACAGCTGATGG																																																																														
MYD88	0	MSKCC	GRCh37	3	38182253	38182253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	129	422	0	ENST00000396334.3:c.689G>A	p.Arg230His	p.R230H	ENST00000396334	NM_002468.4	230	cGc/cAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47125850	47125850	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	29	232	0	ENST00000409792.3:c.5420T>A	p.Leu1807Ter	p.L1807*	ENST00000409792	NM_014159.6	1807	tTg/tAg																																																																														
MITF	0	MSKCC	GRCh37	3	70014143	70014143	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	91	634	0	ENST00000352241.4:c.1307T>C	p.Leu436Pro	p.L436P	ENST00000352241	NM_198159.2	436	cTa/cCa																																																																														
SOX2	0	MSKCC	GRCh37	3	181431088	181431088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	188	553	0	ENST00000325404.1:c.940C>T	p.Leu314Phe	p.L314F	ENST00000325404	NM_003106.3	314	Ctc/Ttc																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191178	185191178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	69	344	2	ENST00000265026.3:c.2059G>A	p.Ala687Thr	p.A687T	ENST00000265026	NM_004721.4	687	Gct/Act																																																																														
TET2	0	MSKCC	GRCh37	4	106193845	106193845	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	67	383	0	ENST00000380013.4:c.4307A>G	p.Glu1436Gly	p.E1436G	ENST00000380013	NM_001127208.2	1436	gAg/gGg																																																																														
FAT1	0	MSKCC	GRCh37	4	187554878	187554878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	80	462	1	ENST00000441802.2:c.4283C>T	p.Thr1428Ile	p.T1428I	ENST00000441802	NM_005245.3	1428	aCa/aTa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38996949	38996949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	118	750	0	ENST00000357387.3:c.428G>T	p.Arg143Met	p.R143M	ENST00000357387	NM_152756.3	143	aGg/aTg																																																																														
RAD50	0	MSKCC	GRCh37	5	131973889	131973889	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	45	381	0	ENST00000265335.6:c.3592C>T	p.Arg1198Ter	p.R1198*	ENST00000265335		1198	Cga/Tga																																																																														
CSF1R	0	MSKCC	GRCh37	5	149457718	149457718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	153	757	0	ENST00000286301.3:c.686T>C	p.Val229Ala	p.V229A	ENST00000286301	NM_005211.3	229	gTt/gCt																																																																														
HLA-A	0	MSKCC	GRCh37	6	29912367	29912367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	100	468	1	ENST00000376809.5:c.986C>T	p.Ala329Val	p.A329V	ENST00000376809	NM_002116.7	329	gCc/gTc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87636217	87636217	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	74	372	0	ENST00000277120.3:c.2386delC	p.Gln796ArgfsTer6	p.Q796Rfs*6	ENST00000277120		794	tgC/tg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942794	44942794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	104	754	1	ENST00000377967.4:c.3374C>T	p.Thr1125Ile	p.T1125I	ENST00000377967	NM_021140.2	1125	aCc/aTc																																																																														
GATA1	0	MSKCC	GRCh37	X	48650793	48650793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1207	84	767	0	ENST00000376670.3:c.662G>A	p.Gly221Asp	p.G221D	ENST00000376670	NM_002049.3	221	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	152	511	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900894	3900894	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	37	601	0	ENST00000262367.5:c.202A>T	p.Lys68Ter	p.K68*	ENST00000262367	NM_004380.2	68	Aaa/Taa																																																																														
FH	0	MSKCC	GRCh37	1	241682983	241682983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	18	479	0	ENST00000366560.3:c.40C>T	p.Leu14Phe	p.L14F	ENST00000366560	NM_000143.3	14	Ctc/Ttc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472466	88472466	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	27	632	0	ENST00000360948.2:c.2089delG	p.Asp697ThrfsTer62	p.D697Tfs*62	ENST00000360948	NM_001012338.2	697	Gac/ac																																																																														
ERBB4	0	MSKCC	GRCh37	2	212578341	212578341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	14	388	2	ENST00000342788.4:c.916C>A	p.Arg306Ser	p.R306S	ENST00000342788	NM_005235.2	306	Cgt/Agt																																																																														
APC	0	MSKCC	GRCh37	5	112175436	112175484	+	frameshift_variant	Frame_Shift_Del	DEL	TCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAG	TCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAG	-			P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	28	264	0	ENST00000257430.4:c.4147_4195delATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTC	p.Met1383ValfsTer16	p.M1383Vfs*16	ENST00000257430	NM_000038.5	1382	cTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGt/ct																																																																														
BTK	0	MSKCC	GRCh37	X	100617671	100617671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	25	302	0	ENST00000308731.7:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000308731	NM_000061.2	133	cGg/cAg																																																																														
WT1	0	MSKCC	GRCh37	11	32449563	32449563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	90	919	0	ENST00000332351.3:c.811C>A	p.His271Asn	p.H271N	ENST00000332351	NM_024426.4	271	Cac/Aac																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858190	9858190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	77	565	1	ENST00000330684.3:c.3211C>A	p.His1071Asn	p.H1071N	ENST00000330684	NM_001134407.1	1071	Cac/Aac																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271696	15271696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	130	1161	0	ENST00000263388.2:c.6743C>T	p.Ser2248Phe	p.S2248F	ENST00000263388	NM_000435.2	2248	tCc/tTc																																																																														
BRD4	0	MSKCC	GRCh37	19	15375541	15375541	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1294	86	1018	0	ENST00000263377.2:c.886A>C	p.Thr296Pro	p.T296P	ENST00000263377	NM_058243.2	296	Acc/Ccc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198274724	198274724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	45	326	0	ENST00000335508.6:c.674G>T	p.Gly225Val	p.G225V	ENST00000335508	NM_012433.2	225	gGg/gTg																																																																														
SYK	0	MSKCC	GRCh37	9	93657824	93657824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	119	465	0	ENST00000375746.1:c.1850C>A	p.Pro617His	p.P617H	ENST00000375746	NM_001174167.1	617	cCc/cAc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52588809	52588809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	202	610	1	ENST00000394830.3:c.4219C>T	p.His1407Tyr	p.H1407Y	ENST00000394830	NM_018313.4	1407	Cac/Tac																																																																														
ARAF	0	MSKCC	GRCh37	X	47429016	47429016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	202	285	0	ENST00000377045.4:c.1379C>T	p.Ala460Val	p.A460V	ENST00000377045	NM_001654.4	460	gCc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	18	515	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106520087	106520087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	90	295	0	ENST00000359195.3:c.2515C>T	p.Arg839Cys	p.R839C	ENST00000359195	NM_002649.2	839	Cgc/Tgc																																																																														
FANCA	0	MSKCC	GRCh37	16	89877455	89877455	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	74	1021	1	ENST00000389301.3:c.308C>G	p.Ser103Ter	p.S103*	ENST00000389301	NM_000135.2	103	tCa/tGa																																																																														
SUFU	0	MSKCC	GRCh37	10	104353808	104353808	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	49	880	0	ENST00000369902.3:c.742G>C	p.Asp248His	p.D248H	ENST00000369902	NM_016169.3	248	Gat/Cat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427975	49427975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	206	951	2	ENST00000301067.7:c.10615C>T	p.Arg3539Trp	p.R3539W	ENST00000301067	NM_003482.3	3539	Cgg/Tgg																																																																														
TBX3	0	MSKCC	GRCh37	12	115120842	115120842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	112	647	0	ENST00000257566.3:c.164C>T	p.Ser55Leu	p.S55L	ENST00000257566	NM_016569.3	55	tCg/tTg																																																																														
AXL	0	MSKCC	GRCh37	19	41727050	41727050	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0017720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	91	895	0	ENST00000301178.4:c.309-1G>A		p.X103_splice	ENST00000301178	NM_021913.4	103																																																																															
SOX17	0	MSKCC	GRCh37	8	55371818	55371818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	54	237	0	ENST00000297316.4:c.508G>A	p.Glu170Lys	p.E170K	ENST00000297316	NM_022454.3	170	Gag/Aag																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741578	145741578	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	514	1122	0	ENST00000428558.2:c.925C>T	p.Gln309Ter	p.Q309*	ENST00000428558	NM_004260.3	309	Cag/Tag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44910963	44910963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	93	688	0	ENST00000377967.4:c.664C>T	p.His222Tyr	p.H222Y	ENST00000377967	NM_021140.2	222	Cat/Tat																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	222	366	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11113836	11113836	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0017722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			333	320	392	1	ENST00000344626.4:c.1943+1G>T		p.X648_splice	ENST00000344626	NM_003072.3	648																																																																															
STK11	0	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0017722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			472	416	442	1	ENST00000326873.7:c.598-2A>T		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																															
KEAP1	0	MSKCC	GRCh37	19	10602340	10602341	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0017722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	422	616	0	ENST00000171111.5:c.1235_1237dup	p.Pro412dup	p.P412dup	ENST00000171111	NM_203500.1	412	cgt/cCCCgt																																																																														
MSH6	0	MSKCC	GRCh37	2	48032123	48032124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			393	228	261	0	ENST00000234420.5:c.3514dup	p.Arg1172LysfsTer5	p.R1172Kfs*5	ENST00000234420	NM_000179.2	1171	-/A																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259229	36259229	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	539	529	1	ENST00000300305.3:c.262G>T	p.Glu88Ter	p.E88*	ENST00000300305		88	Gag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151949758	151949758	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	45	401	0	ENST00000262189.6:c.1342C>T	p.Gln448Ter	p.Q448*	ENST00000262189	NM_170606.2	448	Cag/Tag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881353	37881353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	510	566	0	ENST00000269571.5:c.2545C>G	p.Arg849Gly	p.R849G	ENST00000269571		849	Cgg/Ggg																																																																														
APC	0	MSKCC	GRCh37	5	112173759	112173759	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	38	301	0	ENST00000257430.4:c.2468C>A	p.Ser823Ter	p.S823*	ENST00000257430	NM_000038.5	823	tCa/tAa																																																																														
NBN	0	MSKCC	GRCh37	8	90976656	90976656	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017722-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			222	224	372	1	ENST00000265433.3:c.976C>T	p.Gln326Ter	p.Q326*	ENST00000265433	NM_002485.4	326	Cag/Tag																																																																														
HRAS	0	MSKCC	GRCh37	11	533552	533552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	564	1426	0	ENST00000311189.7:c.351G>C	p.Lys117Asn	p.K117N	ENST00000311189		117	aaG/aaC																																																																														
PGR	0	MSKCC	GRCh37	11	100998385	100998385	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	108	315	0	ENST00000325455.5:c.1417G>T	p.Gly473Cys	p.G473C	ENST00000325455	NM_001202474.3	473	Ggc/Tgc																																																																														
RB1	0	MSKCC	GRCh37	13	48937095	48937095	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0017723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	212	498	1	ENST00000267163.4:c.861+2T>A		p.X287_splice	ENST00000267163	NM_000321.2	287																																																																															
TP53	0	MSKCC	GRCh37	17	7578197	7578197	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	603	1580	1	ENST00000269305.4:c.652delG	p.Val218CysfsTer29	p.V218Cfs*29	ENST00000269305	NM_001126112.2	218	Gtg/tg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212989517	212989517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	297	927	0	ENST00000342788.4:c.194T>C	p.Ile65Thr	p.I65T	ENST00000342788	NM_005235.2	65	aTa/aCa																																																																														
PREX2	0	MSKCC	GRCh37	8	68942730	68942730	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0017723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	300	861	0	ENST00000288368.4:c.544-2A>T		p.X182_splice	ENST00000288368	NM_024870.2	182																																																																															
FLT1	0	MSKCC	GRCh37	13	29008291	29008291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	110	490	0	ENST00000282397.4:c.580A>G	p.Ile194Val	p.I194V	ENST00000282397	NM_002019.4	194	Ata/Gta																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	325	743	2	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
ETV1	0	MSKCC	GRCh37	7	13946224	13946224	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	251	458	0	ENST00000405192.2:c.872G>A	p.Gly291Glu	p.G291E	ENST00000405192	NM_001163147.1	291	gGa/gAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	181	857	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0017725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	22	680	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	260	379	0	ENST00000244661.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000244661	NM_003537.3	74	Gaa/Aaa																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175942	176175942	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	13	104	0	ENST00000367669.3:c.173C>A	p.Ser58Ter	p.S58*	ENST00000367669	NM_022457.5	58	tCg/tAg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912759	32912759	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	36	662	0	ENST00000380152.3:c.4267A>G	p.Thr1423Ala	p.T1423A	ENST00000380152		1423	Act/Gct																																																																														
PPARG	0	MSKCC	GRCh37	3	12393128	12393128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	74	918	1	ENST00000287820.6:c.37G>C	p.Glu13Gln	p.E13Q	ENST00000287820	NM_015869.4	13	Gaa/Caa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808951	1808951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	98	774	2	ENST00000260795.2:c.2383C>A	p.Pro795Thr	p.P795T	ENST00000260795		795	Ccc/Acc																																																																														
ROS1	0	MSKCC	GRCh37	6	117714432	117714432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	44	766	1	ENST00000368508.3:c.1217C>T	p.Pro406Leu	p.P406L	ENST00000368508	NM_002944.2	406	cCc/cTc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949994	44949995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	125	381	0	ENST00000377967.4:c.3765dup	p.Tyr1256ValfsTer35	p.Y1256Vfs*35	ENST00000377967	NM_021140.2	1255	cgg/cGgg																																																																														
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0017729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	258	807	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881617	37881617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	105	849	3	ENST00000269571.5:c.2687G>A	p.Arg896His	p.R896H	ENST00000269571		896	cGc/cAc																																																																														
STAT3	0	MSKCC	GRCh37	17	40474404	40474404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	70	709	0	ENST00000264657.5:c.1997T>G	p.Leu666Arg	p.L666R	ENST00000264657	NM_139276.2	666	cTg/cGg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434968	49434969	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0017730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	40	635	0	ENST00000301067.7:c.6584_6585delCCinsG	p.Thr2195SerfsTer69	p.T2195Sfs*69	ENST00000301067	NM_003482.3	2195	aCC/aG																																																																														
MTOR	0	MSKCC	GRCh37	1	11297903	11297903	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	25	632	1	ENST00000361445.4:c.2205C>G	p.Ile735Met	p.I735M	ENST00000361445	NM_004958.3	735	atC/atG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0017732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	52	954	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89653835	89653835	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	43	772	0	ENST00000371953.3:c.133delG	p.Val45TyrfsTer9	p.V45Yfs*9	ENST00000371953	NM_000314.4	45	Gta/ta																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	30	608	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830704	72830705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	46	806	0	ENST00000268489.5:c.5876dup	p.Tyr1960ValfsTer2	p.Y1960Vfs*2	ENST00000268489	NM_006885.3	1959	cag/caAg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	194	830	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																														
APC	0	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	176	449	1	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																																																														
SPOP	0	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	163	772	0	ENST00000347630.2:c.392G>T	p.Trp131Leu	p.W131L	ENST00000347630	NM_001007230.1	131	tGg/tTg																																																																														
AXL	0	MSKCC	GRCh37	19	41748914	41748914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	50	425	2	ENST00000301178.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000301178	NM_021913.4	480	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	71	444	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
ROS1	0	MSKCC	GRCh37	6	117715804	117715804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	100	457	0	ENST00000368508.3:c.954G>T	p.Leu318Phe	p.L318F	ENST00000368508	NM_002944.2	318	ttG/ttT																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509420	106509420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	109	482	0	ENST00000359195.3:c.1414C>T	p.Arg472Cys	p.R472C	ENST00000359195	NM_002649.2	472	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	250	462	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
KMT2D	0	MSKCC	GRCh37	12	49416488	49416488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	231	497	0	ENST00000301067.7:c.16223G>T	p.Gly5408Val	p.G5408V	ENST00000301067	NM_003482.3	5408	gGc/gTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288708	15288708	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	18	44	0	ENST00000263388.2:c.4031G>C	p.Cys1344Ser	p.C1344S	ENST00000263388	NM_000435.2	1344	tGt/tCt																																																																														
CTLA4	0	MSKCC	GRCh37	2	204735585	204735585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	210	436	0	ENST00000302823.3:c.386G>A	p.Cys129Tyr	p.C129Y	ENST00000302823	NM_005214.4	129	tGc/tAc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957521	1957521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	211	690	0	ENST00000382891.5:c.2620G>T	p.Ala874Ser	p.A874S	ENST00000382891	NM_133335.3	874	Gct/Tct																																																																														
KIT	0	MSKCC	GRCh37	4	55594233	55594233	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1458	354	429	0	ENST00000288135.5:c.1936T>G	p.Tyr646Asp	p.Y646D	ENST00000288135	NM_000222.2	646	Tac/Gac																																																																														
KIT	0	MSKCC	GRCh37	4	55598105	55598105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1647	435	530	0	ENST00000288135.5:c.2302G>C	p.Asp768His	p.D768H	ENST00000288135	NM_000222.2	768	Gac/Cac																																																																														
KIT	0	MSKCC	GRCh37	4	55599237	55599237	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	286	320	0	ENST00000288135.5:c.2363G>T	p.Cys788Phe	p.C788F	ENST00000288135	NM_000222.2	788	tGt/tTt																																																																														
KDR	0	MSKCC	GRCh37	4	55979549	55979549	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	1172	577	0	ENST00000263923.4:c.898A>G	p.Ser300Gly	p.S300G	ENST00000263923	NM_002253.2	300	Agt/Ggt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247342	153247343	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	80	423	0	ENST00000281708.4:c.1459dup	p.Asp487GlyfsTer3	p.D487Gfs*3	ENST00000281708	NM_033632.3	487	gat/gGat																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138196926	138196926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	140	328	0	ENST00000237289.4:c.588A>G	p.Ile196Met	p.I196M	ENST00000237289	NM_001270507.1	196	atA/atG																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450363	50450363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	195	418	0	ENST00000331340.3:c.547C>A	p.Arg183Ser	p.R183S	ENST00000331340	NM_006060.4	183	Cgc/Agc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10267124	10267124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	8	538	0	ENST00000340748.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000340748		432	Gaa/Aaa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56480404	56480404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	232	594	0	ENST00000267101.3:c.511G>A	p.Asp171Asn	p.D171N	ENST00000267101	NM_001982.3	171	Gat/Aat																																																																														
RET	0	MSKCC	GRCh37	10	43608316	43608317	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0017740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	262	719	0	ENST00000355710.3:c.1666_1668dup	p.Ser556dup	p.S556dup	ENST00000355710	NM_020975.4	556	ttc/ttCTCc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	329	495	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0017742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	80	341	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
ARAF	0	MSKCC	GRCh37	X	47426801	47426806	+	inframe_deletion	In_Frame_Del	DEL	AGGCTT	AGGCTT	-			P-0017743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	53	235	0	ENST00000377045.4:c.1046_1051delAGGCTT	p.Gln349_Phe351delinsLeu	p.Q349_F351delinsL	ENST00000377045	NM_001654.4	349	cAGGCTTtc/ctc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	402	393	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	651	589	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PTEN	0	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	286	362	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	319	357	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	475	499	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858735	9858735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	224	294	0	ENST00000330684.3:c.2666G>A	p.Gly889Glu	p.G889E	ENST00000330684	NM_001134407.1	889	gGa/gAa																																																																														
MET	0	MSKCC	GRCh37	7	116340201	116340201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	324	365	0	ENST00000397752.3:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000397752	NM_000245.2	355	Gaa/Aaa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390905	89390905	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	245	335	0	ENST00000336596.2:c.971G>A	p.Arg324Gln	p.R324Q	ENST00000336596	NM_005233.5	324	cGa/cAa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468393	89468393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	200	291	0	ENST00000336596.2:c.1927C>T	p.Pro643Ser	p.P643S	ENST00000336596	NM_005233.5	643	Cct/Tct																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851604	134851604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	405	478	0	ENST00000398015.3:c.1010C>T	p.Ser337Phe	p.S337F	ENST00000398015	NM_004441.4	337	tCc/tTc																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186504949	186504949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	316	355	0	ENST00000323963.5:c.805G>A	p.Glu269Lys	p.E269K	ENST00000323963		269	Gag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187510233	187510233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	447	538	0	ENST00000441802.2:c.13280G>A	p.Gly4427Glu	p.G4427E	ENST00000441802	NM_005245.3	4427	gGa/gAa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527817	157527817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	393	435	1	ENST00000346085.5:c.5542C>A	p.Pro1848Thr	p.P1848T	ENST00000346085	NM_020732.3	1848	Ccc/Acc																																																																														
INHBA	0	MSKCC	GRCh37	7	41739726	41739726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	607	664	0	ENST00000242208.4:c.247C>T	p.Leu83Phe	p.L83F	ENST00000242208	NM_002192.2	83	Ctt/Ttt																																																																														
AMER1	0	MSKCC	GRCh37	X	63411680	63411680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	610	426	0	ENST00000330258.3:c.1487C>T	p.Pro496Leu	p.P496L	ENST00000330258	NM_152424.3	496	cCc/cTc																																																																														
MTOR	0	MSKCC	GRCh37	1	11182179	11182179	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	427	602	1	ENST00000361445.4:c.6667C>T	p.Gln2223Ter	p.Q2223*	ENST00000361445	NM_004958.3	2223	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0017745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	275	414	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	98	339	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
KDR	0	MSKCC	GRCh37	4	55955592	55955592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	143	421	1	ENST00000263923.4:c.3353G>A	p.Arg1118Gln	p.R1118Q	ENST00000263923	NM_002253.2	1118	cGa/cAa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420258	88420258	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	125	386	0	ENST00000360948.2:c.2428G>T	p.Glu810Ter	p.E810*	ENST00000360948	NM_001012338.2	810	Gaa/Taa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81965130	81965130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	53	453	2	ENST00000359376.3:c.2610G>T	p.Lys870Asn	p.K870N	ENST00000359376	NM_002661.3	870	aaG/aaT																																																																														
TP53	0	MSKCC	GRCh37	17	7578456	7578467	+	inframe_deletion	In_Frame_Del	DEL	GCGGACGCGGGT	GCGGACGCGGGT	-			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	139	627	0	ENST00000269305.4:c.463_474delACCCGCGTCCGC	p.Thr155_Arg158del	p.T155_R158del	ENST00000269305	NM_001126112.2	155	ACCCGCGTCCGC/-																																																																														
EPAS1	0	MSKCC	GRCh37	2	46588157	46588157	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	95	482	0	ENST00000263734.3:c.707A>C	p.Asp236Ala	p.D236A	ENST00000263734	NM_001430.4	236	gAc/gCc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46255776	46255776	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	124	363	1	ENST00000371998.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371998		130	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112174916	112174917	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	74	296	0	ENST00000257430.4:c.3627dup	p.His1210ThrfsTer7	p.H1210Tfs*7	ENST00000257430	NM_000038.5	1209	gaa/gAaa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176519704	176519704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143108014		P-0017746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	186	477	0	ENST00000292408.4:c.976G>A	p.Glu326Lys	p.E326K	ENST00000292408	NM_213647.1	326	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	56	282	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																														
TBX3	0	MSKCC	GRCh37	12	115112198	115112199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	187	487	0	ENST00000257566.3:c.1541dup	p.Asn514LysfsTer178	p.N514Kfs*178	ENST00000257566	NM_016569.3	514	aac/aaAc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30068325	30068325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	44	258	0	ENST00000331968.5:c.2074G>A	p.Val692Met	p.V692M	ENST00000331968	NM_002742.2	692	Gtg/Atg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266611	198266611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	168	336	0	ENST00000335508.6:c.2225G>A	p.Gly742Asp	p.G742D	ENST00000335508	NM_012433.2	742	gGt/gAt																																																																														
AXIN1	0	MSKCC	GRCh37	16	396284	396284	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0017748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	420	632	0	ENST00000262320.3:c.742A>T	p.Lys248Ter	p.K248*	ENST00000262320	NM_003502.3	248	Aag/Tag																																																																														
BRD4	0	MSKCC	GRCh37	19	15349607	15349607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	209	698	0	ENST00000263377.2:c.3967C>T	p.Gln1323Ter	p.Q1323*	ENST00000263377	NM_058243.2	1323	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	35	491	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149511596	149511596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	41	504	0	ENST00000261799.4:c.1189C>T	p.Arg397Trp	p.R397W	ENST00000261799	NM_002609.3	397	Cgg/Tgg																																																																														
RB1	0	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	56	444	0	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1220428	1220428	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	64	663	0	ENST00000326873.7:c.521A>C	p.His174Pro	p.H174P	ENST00000326873	NM_000455.4	174	cAc/cCc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138461	11138461	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	25	367	0	ENST00000344626.4:c.3217C>G	p.Leu1073Val	p.L1073V	ENST00000344626	NM_003072.3	1073	Ctg/Gtg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138564	11138564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	75	649	1	ENST00000344626.4:c.3320C>T	p.Ser1107Phe	p.S1107F	ENST00000344626	NM_003072.3	1107	tCc/tTc																																																																														
FLT4	0	MSKCC	GRCh37	5	180056294	180056294	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	60	598	0	ENST00000261937.6:c.950A>T	p.Gln317Leu	p.Q317L	ENST00000261937	NM_182925.4	317	cAg/cTg																																																																														
IRF4	0	MSKCC	GRCh37	6	398904	398904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	44	340	0	ENST00000380956.4:c.714C>A	p.Ser238Arg	p.S238R	ENST00000380956	NM_001195286.1	238	agC/agA																																																																														
LATS1	0	MSKCC	GRCh37	6	150001502	150001502	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	56	462	0	ENST00000253339.5:c.2102A>G	p.Asp701Gly	p.D701G	ENST00000253339		701	gAc/gGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	130	545	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845821	72845821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	196	451	0	ENST00000268489.5:c.3646G>A	p.Glu1216Lys	p.E1216K	ENST00000268489	NM_006885.3	1216	Gag/Aag																																																																														
BAP1	0	MSKCC	GRCh37	3	52437155	52437155	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0017750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	144	378	0	ENST00000460680.1:c.1889delA	p.Lys630ArgfsTer7	p.K630Rfs*7	ENST00000460680	NM_004656.3	630	aAg/ag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	766	429	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47041648	47041648	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	250	289	0	ENST00000329236.7:c.1639G>T	p.Gly547Ter	p.G547*	ENST00000329236	NM_001204466.1	547	Gga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	177	605	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66727402	66727443	+	inframe_deletion	In_Frame_Del	DEL	CTAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCTTT	CTAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCTTT	-			P-0017752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	108	329	0	ENST00000307102.5:c.120_161del	p.Glu41_Leu54del	p.E41_L54del	ENST00000307102	NM_002755.3	40	CTAGAGCTTGATGAGCAGCAGCGAAAGCGCCTTGAGGCCTTT/-																																																																														
RPTOR	0	MSKCC	GRCh37	17	78831583	78831583	+	splice_region_variant,intron_variant	Splice_Region	DEL	C	C	-			P-0017752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	91	285	0	ENST00000306801.3:c.1399-3delC		p.X467_splice	ENST00000306801	NM_020761.2	467																																																																															
IL7R	0	MSKCC	GRCh37	5	35876476	35876476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1242	182	469	0	ENST00000303115.3:c.1268C>T	p.Ser423Phe	p.S423F	ENST00000303115	NM_002185.3	423	tCt/tTt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100523	157100527	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCG	GCCCG	-			P-0017752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	82	285	0	ENST00000346085.5:c.1463_1467del	p.Pro488LeufsTer45	p.P488Lfs*45	ENST00000346085	NM_020732.3	487	aGCCCG/a																																																																														
STAG2	0	MSKCC	GRCh37	X	123171464	123171540	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTGTAAAGGTAAGATATATTTATTTTGAAATCAGCAGCTCTCAAATAGTCACTTCGTTGTTCCACCTAAAGAGAT	GGCTGTAAAGGTAAGATATATTTATTTTGAAATCAGCAGCTCTCAAATAGTCACTTCGTTGTTCCACCTAAAGAGAT	-			P-0017752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	113	246	0	ENST00000218089.9:c.377_385+68delGCTGTAAAGGTAAGATATATTTATTTTGAAATCAGCAGCTCTCAAATAGTCACTTCGTTGTTCCACCTAAAGAGATG		p.X126_splice	ENST00000218089	NM_001042749.1	126																																																																															
KIT	0	MSKCC	GRCh37	4	55593604	55593607	+	protein_altering_variant	In_Frame_Del	DEL	GGAA	GGAA	C			P-0017753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	192	374	0	ENST00000288135.5:c.1670_1673delGGAAinsC	p.Trp557_Lys558delinsSer	p.W557_K558delinsS	ENST00000288135	NM_000222.2	557	tGGAAg/tCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	785	461	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885211	111885211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	131	436	1	ENST00000341259.2:c.1099G>A	p.Gly367Ser	p.G367S	ENST00000341259	NM_005475.2	367	Ggc/Agc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	166	519	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	462	458	1				ENST00000310581	NM_198253.2																																																																																
BTK	0	MSKCC	GRCh37	X	100608976	100608976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0017757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	252	423	0	ENST00000308731.7:c.1632G>C	p.Arg544Ser	p.R544S	ENST00000308731	NM_000061.2	544	agG/agC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	32	683	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	52	564	2	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																																																														
NUF2	0	MSKCC	GRCh37	1	163315494	163315494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	38	666	0	ENST00000271452.3:c.834C>G	p.Ile278Met	p.I278M	ENST00000271452	NM_145697.2	278	atC/atG																																																																														
PGR	0	MSKCC	GRCh37	11	100998413	100998413	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	57	311	0	ENST00000325455.5:c.1389C>G	p.Tyr463Ter	p.Y463*	ENST00000325455	NM_001202474.3	463	taC/taG																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482820	67482820	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	260	565	0	ENST00000327367.4:c.1224C>G	p.Asp408Glu	p.D408E	ENST00000327367	NM_005902.3	408	gaC/gaG																																																																														
KDR	0	MSKCC	GRCh37	4	55991394	55991394	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	171	784	1	ENST00000263923.4:c.67G>T	p.Gly23Cys	p.G23C	ENST00000263923	NM_002253.2	23	Ggt/Tgt																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741257	145741257	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	141	687	0	ENST00000428558.2:c.1149G>A	p.Trp383Ter	p.W383*	ENST00000428558	NM_004260.3	383	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	301	1043	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	220	741	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593477	48593478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0017762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	102	553	1	ENST00000342988.3:c.1229_1230insAA	p.Ser411ArgfsTer5	p.S411Rfs*5	ENST00000342988	NM_005359.5	410	cag/cAAag																																																																														
AGO2	0	MSKCC	GRCh37	8	141551393	141551393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	165	861	1	ENST00000220592.5:c.1904G>A	p.Arg635Gln	p.R635Q	ENST00000220592	NM_012154.3	635	cGg/cAg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971130	21971130	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	164	561	0	ENST00000304494.5:c.228delC	p.Thr77LeufsTer69	p.T77Lfs*69	ENST00000304494	NM_000077.4	76	gcC/gc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971130	21971130	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	164	561	0	ENST00000304494.5:c.228delC	p.Thr77LeufsTer69	p.T77Lfs*69	ENST00000304494	NM_000077.4	76	gcC/gc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971130	21971130	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	164	561	0	ENST00000304494.5:c.228delC	p.Thr77LeufsTer69	p.T77Lfs*69	ENST00000304494	NM_000077.4	76	gcC/gc																																																																														
TP53	0	MSKCC	GRCh37	17	7579343	7579385	+	protein_altering_variant	In_Frame_Del	DEL	TGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTT	TGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTT	A			P-0017762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	90	875	0	ENST00000269305.4:c.302_344delAAACCTACCAGGGCAGCTACGGTTTCCGTCTGGGCTTCTTGCAinsT	p.Lys101_His115delinsIle	p.K101_H115delinsI	ENST00000269305	NM_001126112.2	101	aAAACCTACCAGGGCAGCTACGGTTTCCGTCTGGGCTTCTTGCAt/aTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	427	694	4	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
SMAD2	0	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	113	484	2	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0017765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	158	380	9	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
RET	0	MSKCC	GRCh37	10	43595979	43595979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	607	883	16	ENST00000355710.3:c.146C>T	p.Pro49Leu	p.P49L	ENST00000355710	NM_020975.4	49	cCc/cTc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920430	134920430	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	277	727	3	ENST00000398015.3:c.2245A>C	p.Asn749His	p.N749H	ENST00000398015	NM_004441.4	749	Aac/Cac																																																																														
KIT	0	MSKCC	GRCh37	4	55569990	55569990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	80	764	5	ENST00000288135.5:c.857G>C	p.Gly286Ala	p.G286A	ENST00000288135	NM_000222.2	286	gGa/gCa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56488324	56488324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143726790		P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	187	803	0	ENST00000267101.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000267101	NM_001982.3	615	Gag/Aag																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	177	914	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916836	178916836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	155	1034	0	ENST00000263967.3:c.223C>G	p.Gln75Glu	p.Q75E	ENST00000263967	NM_006218.2	75	Caa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	219	800	0	ENST00000269305.4:c.776A>T	p.Asp259Val	p.D259V	ENST00000269305	NM_001126112.2	259	gAc/gTc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029408	14029408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	150	572	0	ENST00000311895.7:c.1619C>T	p.Ser540Leu	p.S540L	ENST00000311895	NM_005236.2	540	tCg/tTg																																																																														
APC	0	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	68	360	0	ENST00000257430.4:c.3807_3808delAT	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281491	49281491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	206	764	0	ENST00000282018.3:c.538C>A	p.Gln180Lys	p.Q180K	ENST00000282018	NM_020377.2	180	Cag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112175366	112175367	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	69	389	0	ENST00000257430.4:c.4076_4077delAA	p.Lys1359IlefsTer15	p.K1359Ifs*15	ENST00000257430	NM_000038.5	1359	AAa/a																																																																														
FLT4	0	MSKCC	GRCh37	5	180048635	180048635	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150093355		P-0017766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	301	820	0	ENST00000261937.6:c.1927G>A	p.Val643Ile	p.V643I	ENST00000261937	NM_182925.4	643	Gtc/Atc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0017767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	83	570	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
CDH1	0	MSKCC	GRCh37	16	68842387	68842387	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	186	656	2	ENST00000261769.5:c.448A>T	p.Arg150Ter	p.R150*	ENST00000261769	NM_004360.3	150	Aga/Tga																																																																														
TBX3	0	MSKCC	GRCh37	12	115115439	115115439	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	107	681	1	ENST00000257566.3:c.887A>T	p.Asn296Ile	p.N296I	ENST00000257566	NM_016569.3	296	aAc/aTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	141	824	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	99	614	0				ENST00000310581	NM_198253.2																																																																																
STAT3	0	MSKCC	GRCh37	17	40490803	40490803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	558	579	0	ENST00000264657.5:c.496G>C	p.Glu166Gln	p.E166Q	ENST00000264657	NM_139276.2	166	Gag/Cag																																																																														
INSR	0	MSKCC	GRCh37	19	7122912	7122912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	163	850	1	ENST00000302850.5:c.3347G>A	p.Arg1116His	p.R1116H	ENST00000302850	NM_000208.2	1116	cGt/cAt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212302	36212302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	156	705	2	ENST00000222270.7:c.2053G>A	p.Asp685Asn	p.D685N	ENST00000222270	NM_014727.1	685	Gat/Aat																																																																														
NSD1	0	MSKCC	GRCh37	5	176709508	176709508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	122	606	0	ENST00000439151.2:c.5935G>C	p.Glu1979Gln	p.E1979Q	ENST00000439151	NM_022455.4	1979	Gaa/Caa																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910641	29910641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	66	961	0	ENST00000376809.5:c.181G>T	p.Asp61Tyr	p.D61Y	ENST00000376809	NM_002116.7	61	Gac/Tac																																																																														
PREX2	0	MSKCC	GRCh37	8	69011969	69011969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	170	878	0	ENST00000288368.4:c.2606G>T	p.Ser869Ile	p.S869I	ENST00000288368	NM_024870.2	869	aGc/aTc																																																																														
PREX2	0	MSKCC	GRCh37	8	69031672	69031672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	193	558	0	ENST00000288368.4:c.3427G>A	p.Glu1143Lys	p.E1143K	ENST00000288368	NM_024870.2	1143	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	124	629	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168803	56168804	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0017770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	117	527	0	ENST00000399503.3:c.1658dup	p.Tyr553Ter	p.Y553*	ENST00000399503	NM_005921.1	553	tac/tAac																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56174870	56174870	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	134	580	0	ENST00000399503.3:c.2029C>T	p.Gln677Ter	p.Q677*	ENST00000399503	NM_005921.1	677	Cag/Tag																																																																														
EZH2	0	MSKCC	GRCh37	7	148515002	148515003	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TTCTTCTTTATCATTG			P-0017770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	92	607	0	ENST00000320356.2:c.1191_1206dup	p.Glu403GlnfsTer2	p.E403Qfs*2	ENST00000320356	NM_004456.4	402	-/CAATGATAAAGAAGAA																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46521514	46521514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	37	854	0	ENST00000262741.5:c.894C>G	p.Ile298Met	p.I298M	ENST00000262741	NM_003629.3	298	atC/atG																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	104	977	1	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
PALB2	0	MSKCC	GRCh37	16	23647224	23647224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	31	1014	0	ENST00000261584.4:c.643G>C	p.Glu215Gln	p.E215Q	ENST00000261584	NM_024675.3	215	Gaa/Caa																																																																														
SMYD3	0	MSKCC	GRCh37	1	246490640	246490640	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	24	554	0	ENST00000388985.4:c.395-1G>C		p.X132_splice	ENST00000388985		132																																																																															
KMT2D	0	MSKCC	GRCh37	12	49418622	49418622	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	92	834	0	ENST00000301067.7:c.15892delG	p.Val5298CysfsTer7	p.V5298Cfs*7	ENST00000301067	NM_003482.3	5298	Gtg/tg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743844	40743844	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	27	645	0	ENST00000373198.4:c.3151C>T	p.Gln1051Ter	p.Q1051*	ENST00000373198	NM_133170.3	1051	Cag/Tag																																																																														
RICTOR	0	MSKCC	GRCh37	5	38978704	38978704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	24	762	0	ENST00000357387.3:c.802A>G	p.Thr268Ala	p.T268A	ENST00000357387	NM_152756.3	268	Aca/Gca																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120411	94120411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	42	515	0	ENST00000369303.4:c.640A>G	p.Ile214Val	p.I214V	ENST00000369303	NM_004440.3	214	Atc/Gtc																																																																														
ROS1	0	MSKCC	GRCh37	6	117708970	117708970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	68	747	1	ENST00000368508.3:c.1987C>T	p.Pro663Ser	p.P663S	ENST00000368508	NM_002944.2	663	Ccc/Tcc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509249	106509249	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	160	958	0	ENST00000359195.3:c.1243G>T	p.Glu415Ter	p.E415*	ENST00000359195	NM_002649.2	415	Gag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11121086	11121086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	97	620	0	ENST00000344626.4:c.2153A>G	p.Tyr718Cys	p.Y718C	ENST00000344626	NM_003072.3	718	tAt/tGt																																																																														
STK19	0	MSKCC	GRCh37	6	31939828	31939828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	82	847	0	ENST00000375331.2:c.55G>C	p.Ala19Pro	p.A19P	ENST00000375331	NM_004197.1	19	Gca/Cca																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257591	19257591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	116	462	0	ENST00000162023.5:c.635C>T	p.Pro212Leu	p.P212L	ENST00000162023		212	cCt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	17	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	26	652	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0017778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	64	357	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0017778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	75	390	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	55	218	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101260	27101260	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	87	448	0	ENST00000324856.7:c.4544delG	p.Gly1515AlafsTer12	p.G1515Afs*12	ENST00000324856	NM_006015.4	1514	acG/ac																																																																														
PGR	0	MSKCC	GRCh37	11	100998190	100998193	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	GT			P-0017778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	66	265	0	ENST00000325455.5:c.1609_1612delGTCTinsAC	p.Val537ThrfsTer36	p.V537Tfs*36	ENST00000325455	NM_001202474.3	537	GTCTac/ACac																																																																														
RAD21	0	MSKCC	GRCh37	8	117875375	117875375	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	92	443	0	ENST00000297338.2:c.268delC	p.Arg90GlyfsTer35	p.R90Gfs*35	ENST00000297338	NM_006265.2	90	Cgg/gg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720805	89720805	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AG			P-0017778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	34	207	0	ENST00000371953.3:c.956delinsAG	p.Thr319LysfsTer6	p.T319Kfs*6	ENST00000371953	NM_000314.4	319	aCt/aAGt																																																																														
YAP1	0	MSKCC	GRCh37	11	102076674	102076674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	53	347	0	ENST00000282441.5:c.853C>G	p.Leu285Val	p.L285V	ENST00000282441	NM_001130145.2	285	Ctg/Gtg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32165327	32165327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	89	668	0	ENST00000375023.3:c.4801C>A	p.Gln1601Lys	p.Q1601K	ENST00000375023	NM_004557.3	1601	Cag/Aag																																																																														
EGFR	0	MSKCC	GRCh37	7	55242470	55242489	+	protein_altering_variant	In_Frame_Del	DEL	TAAGAGAAGCAACATCTCCG	TAAGAGAAGCAACATCTCCG	CT			P-0017780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	81	514	2	ENST00000275493.2:c.2240_2259delTAAGAGAAGCAACATCTCCGinsCT	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCCG/tCT																																																																														
TP53	0	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	694	701	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18715777	18715777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	70	392	0	ENST00000266497.5:c.3608G>A	p.Arg1203Lys	p.R1203K	ENST00000266497		1203	aGg/aAg																																																																														
RB1	0	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	236	355	1	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																															
CREBBP	0	MSKCC	GRCh37	16	3789597	3789597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	463	513	0	ENST00000262367.5:c.4262G>T	p.Cys1421Phe	p.C1421F	ENST00000262367	NM_004380.2	1421	tGc/tTc																																																																														
ATR	0	MSKCC	GRCh37	3	142178072	142178072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	259	298	0	ENST00000350721.4:c.7346C>T	p.Ser2449Leu	p.S2449L	ENST00000350721	NM_001184.3	2449	tCa/tTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	112	530	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
RB1	0	MSKCC	GRCh37	13	48947596	48947596	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	125	403	0	ENST00000267163.4:c.1183delC	p.Gln395AsnfsTer6	p.Q395Nfs*6	ENST00000267163	NM_000321.2	395	Caa/aa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	111	422	0	ENST00000344626.4:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000344626	NM_003072.3	1192	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7573944	7573944	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	91	529	0	ENST00000269305.4:c.1083delG	p.Ser362AlafsTer8	p.S362Afs*8	ENST00000269305	NM_001126112.2	361	ggG/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	8	544	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	162	439	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	41	353	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	61	325	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	160	665	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	145	412	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	84	340	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	137	552	2	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
BRD4	0	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	54	574	2	ENST00000263377.2:c.3061delC	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40370236	40370236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764965457		P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	132	609	7	ENST00000293328.3:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000293328	NM_012448.3	368	Cag/ag																																																																														
TRAF7	0	MSKCC	GRCh37	16	2221594	2221594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	147	578	1	ENST00000326181.6:c.463G>A	p.Ala155Thr	p.A155T	ENST00000326181	NM_032271.2	155	Gcc/Acc																																																																														
POLD1	0	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	71	359	3	ENST00000440232.2:c.342delG	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974770	21974775	+	inframe_deletion	In_Frame_Del	DEL	GGCCGT	GGCCGT	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	29	104	0	ENST00000304494.5:c.52_57delACGGCC	p.Thr18_Ala19del	p.T18_A19del	ENST00000304494	NM_000077.4	18	ACGGCC/-																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974770	21974775	+	inframe_deletion	In_Frame_Del	DEL	GGCCGT	GGCCGT	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	29	104	0	ENST00000304494.5:c.52_57delACGGCC	p.Thr18_Ala19del	p.T18_A19del	ENST00000304494	NM_000077.4	18	ACGGCC/-																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41749491	41749491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	84	363	0	ENST00000226382.2:c.304C>T	p.Arg102Cys	p.R102C	ENST00000226382	NM_003924.3	102	Cgc/Tgc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405953	157405954	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	86	383	2	ENST00000346085.5:c.2201dup	p.Ser736IlefsTer27	p.S736Ifs*27	ENST00000346085	NM_020732.3	732	ccg/ccGg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137784	64137784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	131	795	2	ENST00000334205.4:c.1885C>T	p.Arg629Cys	p.R629C	ENST00000334205	NM_003942.2	629	Cgc/Tgc																																																																														
CTCF	0	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	96	468	0	ENST00000264010.4:c.950_951delCA	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	127	571	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	110	455	1	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																														
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	120	577	1	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	147	608	3	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15290896	15290896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	130	690	3	ENST00000263388.2:c.3314delG	p.Gly1105AlafsTer167	p.G1105Afs*167	ENST00000263388	NM_000435.2	1105	gGc/gc																																																																														
MYCL1	0	MSKCC	GRCh37	1	40363051	40363051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	46	270	0	ENST00000397332.2:c.1178G>A	p.Gly393Asp	p.G393D	ENST00000397332	NM_001033082.2	393	gGc/gAc																																																																														
SMYD3	0	MSKCC	GRCh37	1	245912894	245912894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	93	419	0	ENST00000388985.4:c.1258G>A	p.Glu420Lys	p.E420K	ENST00000388985		420	Gaa/Aaa																																																																														
WT1	0	MSKCC	GRCh37	11	32414212	32414212	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	75	355	2	ENST00000332351.3:c.1339G>A	p.Gly447Ser	p.G447S	ENST00000332351	NM_024426.4	447	Ggt/Agt																																																																														
IGF1	0	MSKCC	GRCh37	12	102869460	102869460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	102	415	0	ENST00000307046.8:c.181G>A	p.Ala61Thr	p.A61T	ENST00000307046	NM_001111285.1	61	Gct/Act																																																																														
POLE	0	MSKCC	GRCh37	12	133263901	133263901	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	59	209	0	ENST00000320574.5:c.1A>G	p.Met1?	p.M1?	ENST00000320574	NM_006231.2	1	Atg/Gtg																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986865	36986865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	58	126	0	ENST00000354822.5:c.824C>T	p.Pro275Leu	p.P275L	ENST00000354822	NM_001079668.2	275	cCg/cTg																																																																														
DICER1	0	MSKCC	GRCh37	14	95574032	95574032	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150510758		P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	62	309	0	ENST00000343455.3:c.2717G>A	p.Arg906His	p.R906H	ENST00000343455	NM_177438.2	906	cGc/cAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347093	347093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	138	682	2	ENST00000262320.3:c.1918del	p.Glu640LysfsTer65	p.E640Kfs*65	ENST00000262320	NM_003502.3	640	Gaa/aa																																																																														
TSC2	0	MSKCC	GRCh37	16	2110677	2110677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	117	509	1	ENST00000219476.3:c.982G>A	p.Ala328Thr	p.A328T	ENST00000219476	NM_000548.3	328	Gca/Aca																																																																														
SLX4	0	MSKCC	GRCh37	16	3658661	3658662	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	150	666	0	ENST00000294008.3:c.304dup	p.Thr102AsnfsTer18	p.T102Nfs*18	ENST00000294008	NM_032444.2	102	acc/aAcc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831608	72831608	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	97	442	0	ENST00000268489.5:c.4973G>C	p.Ser1658Thr	p.S1658T	ENST00000268489	NM_006885.3	1658	aGt/aCt																																																																														
STAT5B	0	MSKCC	GRCh37	17	40354436	40354436	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	138	596	2	ENST00000293328.3:c.2159delG	p.Gly720AlafsTer46	p.G720Afs*46	ENST00000293328	NM_012448.3	720	gGc/gc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59760731	59760731	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	19	576	0	ENST00000259008.2:c.3676delA	p.Thr1226LeufsTer4	p.T1226Lfs*4	ENST00000259008	NM_032043.2	1226	Act/ct																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11107195	11107195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	100	447	3	ENST00000344626.4:c.1787C>T	p.Thr596Met	p.T596M	ENST00000344626	NM_003072.3	596	aCg/aTg																																																																														
UPF1	0	MSKCC	GRCh37	19	18965779	18965779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	101	683	1	ENST00000262803.5:c.1357G>A	p.Val453Ile	p.V453I	ENST00000262803	NM_002911.3	453	Gta/Ata																																																																														
UPF1	0	MSKCC	GRCh37	19	18967059	18967059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	74	478	0	ENST00000262803.5:c.1774G>A	p.Glu592Lys	p.E592K	ENST00000262803	NM_002911.3	592	Gag/Aag																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214728	36214728	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	51	340	2	ENST00000222270.7:c.3159del	p.Arg1055GlyfsTer127	p.R1055Gfs*127	ENST00000222270	NM_014727.1	1052	Ggg/gg																																																																														
MSH2	0	MSKCC	GRCh37	2	47641555	47641555	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	35	117	0	ENST00000233146.2:c.940delC	p.Gln314ArgfsTer17	p.Q314Rfs*17	ENST00000233146	NM_000251.2	314	Cag/ag																																																																														
IRS1	0	MSKCC	GRCh37	2	227660130	227660130	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	86	367	0	ENST00000305123.5:c.3325A>C	p.Ser1109Arg	p.S1109R	ENST00000305123	NM_005544.2	1109	Agt/Cgt																																																																														
PAK7	0	MSKCC	GRCh37	20	9525016	9525016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	108	388	0	ENST00000353224.5:c.1869G>T	p.Glu623Asp	p.E623D	ENST00000353224	NM_177990.2	623	gaG/gaT																																																																														
NCOA3	0	MSKCC	GRCh37	20	46256371	46256371	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	103	535	0	ENST00000371998.3:c.599T>C	p.Leu200Ser	p.L200S	ENST00000371998		200	tTg/tCg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30686293	30686294	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	113	364	0	ENST00000359013.4:c.227_228delGT	p.Cys76Ter	p.C76*	ENST00000359013	NM_001024847.2	75	cTG/c																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67522693	67522693	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	51	257	0	ENST00000274335.5:c.193delG	p.Glu65LysfsTer10	p.E65Kfs*10	ENST00000274335		64	Ggg/gg																																																																														
IRF4	0	MSKCC	GRCh37	6	395001	395001	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	68	398	2	ENST00000380956.4:c.402delA	p.Gly135GlufsTer14	p.G135Efs*14	ENST00000380956	NM_001195286.1	133	Aaa/aa																																																																														
TAP2	0	MSKCC	GRCh37	6	32798105	32798105	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	113	530	0	ENST00000374899.4:c.1574delG	p.Gly525AspfsTer36	p.G525Dfs*36	ENST00000374899	NM_018833.2	525	gGa/ga																																																																														
FYN	0	MSKCC	GRCh37	6	112020752	112020754	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	146	484	0	ENST00000368678.4:c.817_819delAAG	p.Lys273del	p.K273del	ENST00000368678		273	AAG/-																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468098	50468098	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	63	282	1	ENST00000331340.3:c.1333T>C	p.Ser445Pro	p.S445P	ENST00000331340	NM_006060.4	445	Tcg/Ccg																																																																														
PREX2	0	MSKCC	GRCh37	8	69005861	69005861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	85	444	0	ENST00000288368.4:c.2272T>C	p.Tyr758His	p.Y758H	ENST00000288368	NM_024870.2	758	Tat/Cat																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	43	199	0	ENST00000304494.5:c.281T>C	p.Leu94Pro	p.L94P	ENST00000304494	NM_000077.4	94	cTg/cCg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399876	139399876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	112	664	2	ENST00000277541.6:c.4472C>T	p.Thr1491Met	p.T1491M	ENST00000277541	NM_017617.3	1491	aCg/aTg																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15836766	15836766	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	95	394	0	ENST00000307771.7:c.827+1G>A		p.X276_splice	ENST00000307771	NM_005089.3	276																																																																															
AR	0	MSKCC	GRCh37	X	66765743	66765743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	186	820	2	ENST00000374690.3:c.755A>G	p.Glu252Gly	p.E252G	ENST00000374690	NM_000044.3	252	gAg/gGg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63537616	63537616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	46	723	0	ENST00000307078.5:c.1016G>A	p.Arg339His	p.R339H	ENST00000307078	NM_004655.3	339	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	126	719	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416552	49416552	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	74	478	1	ENST00000301067.7:c.16159C>T	p.Gln5387Ter	p.Q5387*	ENST00000301067	NM_003482.3	5387	Cag/Tag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5265075	5265075	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	13	701	1	ENST00000357368.4:c.512A>T	p.Asp171Val	p.D171V	ENST00000357368	NM_002850.3	171	gAc/gTc																																																																														
MST1R	0	MSKCC	GRCh37	3	49932768	49932768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	31	877	0	ENST00000296474.3:c.3103G>T	p.Val1035Phe	p.V1035F	ENST00000296474	NM_002447.2	1035	Gtc/Ttc																																																																														
AMER1	0	MSKCC	GRCh37	X	63413042	63413042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	24	434	0	ENST00000330258.3:c.125C>T	p.Ser42Leu	p.S42L	ENST00000330258	NM_152424.3	42	tCa/tTa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	263	706	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PARP1	0	MSKCC	GRCh37	1	226564885	226564885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	201	553	2	ENST00000366794.5:c.1865C>T	p.Thr622Ile	p.T622I	ENST00000366794	NM_001618.3	622	aCc/aTc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942215	71942216	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	164	513	1	ENST00000298229.2:c.1479_1480delGGinsAT	p.Asp494Tyr	p.D494Y	ENST00000298229	NM_001567.3	493	acGGat/acATat																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18699323	18699323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199904184		P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	214	532	0	ENST00000266497.5:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000266497		1142	Cgt/Tgt																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944983	31944983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	219	722	0	ENST00000340398.3:c.118C>T	p.Arg40Cys	p.R40C	ENST00000340398	NM_001013699.2	40	Cgc/Tgc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112028	115112028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	191	718	0	ENST00000257566.3:c.1712C>T	p.Ser571Phe	p.S571F	ENST00000257566	NM_016569.3	571	tCc/tTc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112253	115112253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	73	152	0	ENST00000257566.3:c.1487G>A	p.Gly496Asp	p.G496D	ENST00000257566	NM_016569.3	496	gGc/gAc																																																																														
FLT3	0	MSKCC	GRCh37	13	28636196	28636196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	122	342	0	ENST00000241453.7:c.176C>T	p.Ser59Phe	p.S59F	ENST00000241453	NM_004119.2	59	tCc/tTc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103524567	103524567	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	127	367	0	ENST00000355739.4:c.2698C>T	p.Gln900Ter	p.Q900*	ENST00000355739	NM_000123.3	900	Caa/Taa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923318	9923318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	193	573	1	ENST00000330684.3:c.1969G>A	p.Glu657Lys	p.E657K	ENST00000330684	NM_001134407.1	657	Gaa/Aaa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923328	9923328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	111	572	0	ENST00000330684.3:c.1959G>A	p.Met653Ile	p.M653I	ENST00000330684	NM_001134407.1	653	atG/atA																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031885	10031885	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	175	533	0	ENST00000330684.3:c.938T>A	p.Ile313Asn	p.I313N	ENST00000330684	NM_001134407.1	313	aTc/aAc																																																																														
FANCA	0	MSKCC	GRCh37	16	89805596	89805596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	215	579	1	ENST00000389301.3:c.4112G>A	p.Gly1371Glu	p.G1371E	ENST00000389301	NM_000135.2	1371	gGg/gAg																																																																														
PPM1D	0	MSKCC	GRCh37	17	58734141	58734141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	285	772	1	ENST00000305921.3:c.1199C>T	p.Ser400Phe	p.S400F	ENST00000305921	NM_003620.3	400	tCc/tTc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59924491	59924491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	140	421	1	ENST00000259008.2:c.598G>A	p.Glu200Lys	p.E200K	ENST00000259008	NM_032043.2	200	Gaa/Aaa																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39600627	39600627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	131	417	1	ENST00000262039.4:c.1442C>T	p.Ser481Leu	p.S481L	ENST00000262039	NM_002647.2	481	tCg/tTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15300200	15300200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	195	615	0	ENST00000263388.2:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000263388	NM_000435.2	359	cCc/cTc																																																																														
BRD4	0	MSKCC	GRCh37	19	15355186	15355186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	260	806	0	ENST00000263377.2:c.2437C>T	p.Pro813Ser	p.P813S	ENST00000263377	NM_058243.2	813	Cca/Tca																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228130	36228130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	192	538	0	ENST00000222270.7:c.7516C>T	p.Pro2506Ser	p.P2506S	ENST00000222270	NM_014727.1	2506	Ccc/Tcc																																																																														
AXL	0	MSKCC	GRCh37	19	41765640	41765640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	239	630	0	ENST00000301178.4:c.2516G>A	p.Gly839Glu	p.G839E	ENST00000301178	NM_021913.4	839	gGa/gAa																																																																														
ERCC2	0	MSKCC	GRCh37	19	45860539	45860539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	175	567	0	ENST00000391945.4:c.1468C>T	p.Leu490Phe	p.L490F	ENST00000391945	NM_000400.3	490	Ctc/Ttc																																																																														
ALK	0	MSKCC	GRCh37	2	29551347	29551347	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	164	549	0	ENST00000389048.3:c.1283G>A	p.Gly428Glu	p.G428E	ENST00000389048	NM_004304.4	428	gGa/gAa																																																																														
ACVR1	0	MSKCC	GRCh37	2	158627027	158627027	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	130	390	0	ENST00000263640.3:c.644-1G>A		p.X215_splice	ENST00000263640	NM_001105.4	215																																																																															
PTPRT	0	MSKCC	GRCh37	20	40710658	40710658	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	158	454	1	ENST00000373198.4:c.4194-1G>A		p.X1398_splice	ENST00000373198	NM_133170.3	1398																																																																															
PTPRT	0	MSKCC	GRCh37	20	41400190	41400190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	193	555	0	ENST00000373198.4:c.569G>A	p.Arg190Lys	p.R190K	ENST00000373198	NM_133170.3	190	aGa/aAa																																																																														
AURKA	0	MSKCC	GRCh37	20	54945363	54945363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	237	591	0	ENST00000312783.6:c.1063G>A	p.Gly355Arg	p.G355R	ENST00000312783	NM_198436.1	355	Gga/Aga																																																																														
RAF1	0	MSKCC	GRCh37	3	12645729	12645729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	105	331	0	ENST00000251849.4:c.740C>T	p.Ser247Phe	p.S247F	ENST00000251849	NM_002880.3	247	tCt/tTt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	107	340	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41280793	41280793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	102	329	0	ENST00000349496.5:c.2306G>A	p.Gly769Asp	p.G769D	ENST00000349496	NM_001904.3	769	gGt/gAt																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186501428	186501428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	98	232	0	ENST00000323963.5:c.29G>A	p.Arg10Lys	p.R10K	ENST00000323963		10	aGa/aAa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920067	1920067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	227	690	0	ENST00000382891.5:c.1127C>T	p.Ser376Phe	p.S376F	ENST00000382891	NM_133335.3	376	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	144	446	0				ENST00000310581	NM_198253.2																																																																																
CARD11	0	MSKCC	GRCh37	7	2952994	2952995	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	168	572	4	ENST00000396946.4:c.2945_2946delCCinsTT	p.Thr982Ile	p.T982I	ENST00000396946	NM_032415.4	982	aCC/aTT																																																																														
HGF	0	MSKCC	GRCh37	7	81388032	81388032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	169	595	1	ENST00000222390.5:c.343G>A	p.Glu115Lys	p.E115K	ENST00000222390	NM_000601.4	115	Gaa/Aaa																																																																														
MET	0	MSKCC	GRCh37	7	116380023	116380023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	183	567	0	ENST00000397752.3:c.1412G>A	p.Gly471Glu	p.G471E	ENST00000397752	NM_000245.2	471	gGa/gAa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151891625	151891626	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	122	420	1	ENST00000262189.6:c.4406_4407delCCinsTT	p.Ser1469Phe	p.S1469F	ENST00000262189	NM_170606.2	1469	tCC/tTT																																																																														
FGFR1	0	MSKCC	GRCh37	8	38285908	38285908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	221	479	0	ENST00000425967.3:c.503C>T	p.Ser168Phe	p.S168F	ENST00000425967	NM_001174067.1	168	tCt/tTt																																																																														
PREX2	0	MSKCC	GRCh37	8	69011975	69011975	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	279	811	1	ENST00000288368.4:c.2612A>T	p.Asn871Ile	p.N871I	ENST00000288368	NM_024870.2	871	aAt/aTt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8404651	8404651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	99	320	0	ENST00000356435.5:c.4096C>T	p.Pro1366Ser	p.P1366S	ENST00000356435		1366	Cct/Tct																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	163	428	1	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	163	428	1	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																																																														
TEK	0	MSKCC	GRCh37	9	27203102	27203102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	221	597	0	ENST00000380036.4:c.2194C>T	p.Leu732Phe	p.L732F	ENST00000380036	NM_000459.3	732	Ctc/Ttc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0017799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	174	701	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589575	67589576	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	173	443	0	ENST00000274335.5:c.1344dupA	p.Leu449IlefsTer3	p.L449Ifs*3	ENST00000274335		446	-/A																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	230	626	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	130	366	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720712	89720712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	154	149	0	ENST00000371953.3:c.867del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	288	gAa/ga																																																																														
STK40	0	MSKCC	GRCh37	1	36826894	36826894	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1468	336	681	0	ENST00000373129.3:c.40T>C	p.Ser14Pro	p.S14P	ENST00000373129	NM_032017.1	14	Tcg/Ccg																																																																														
IGF1	0	MSKCC	GRCh37	12	102813396	102813396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	215	456	0	ENST00000307046.8:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000307046	NM_001111285.1	98	cGg/cAg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921536	178921537	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTGCAACCTACGTGAATGTAAATATGC			P-0017800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	131	505	0	ENST00000263967.3:c.1043_1044insGCGTGCAACCTACGTGAATGTAAATAT	p.Asn347_Ile348insMetArgAlaThrTyrValAsnValAsn	p.N347_I348insMRATYVNVN	ENST00000263967	NM_006218.2	340	tgt/tGTGCAACCTACGTGAATGTAAATATGCgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	32	681	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107125	27107125	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	47	426	0	ENST00000324856.7:c.6736G>T	p.Glu2246Ter	p.E2246*	ENST00000324856	NM_006015.4	2246	Gag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	126	725	1	ENST00000171111.5:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000171111	NM_203500.1	422	Gat/Aat																																																																														
FANCA	0	MSKCC	GRCh37	16	89816265	89816265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	37	514	0	ENST00000389301.3:c.3112C>G	p.Leu1038Val	p.L1038V	ENST00000389301	NM_000135.2	1038	Ctc/Gtc																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2489247	2489247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	35	583	2	ENST00000355716.4:c.152C>T	p.Ser51Phe	p.S51F	ENST00000355716	NM_003820.2	51	tCc/tTc																																																																														
JAK1	0	MSKCC	GRCh37	1	65311270	65311270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	58	503	0	ENST00000342505.4:c.2041C>T	p.Arg681Trp	p.R681W	ENST00000342505	NM_002227.2	681	Cgg/Tgg																																																																														
ARID2	0	MSKCC	GRCh37	12	46246195	46246195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	72	491	0	ENST00000334344.6:c.4289G>T	p.Ser1430Ile	p.S1430I	ENST00000334344	NM_152641.2	1430	aGt/aTt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112614	115112614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	115	895	0	ENST00000257566.3:c.1126G>T	p.Asp376Tyr	p.D376Y	ENST00000257566	NM_016569.3	376	Gac/Tac																																																																														
POLE	0	MSKCC	GRCh37	12	133226301	133226302	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	80	698	2	ENST00000320574.5:c.3756_3757delGGinsTT	p.GlnGlu1252HisTer	p.QE1252H*	ENST00000320574	NM_006231.2	1252	caGGaa/caTTaa																																																																														
FLT1	0	MSKCC	GRCh37	13	29041042	29041042	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	67	391	0	ENST00000282397.4:c.386G>C	p.Ser129Thr	p.S129T	ENST00000282397	NM_002019.4	129	aGt/aCt																																																																														
MGA	0	MSKCC	GRCh37	15	41988858	41988858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	72	583	1	ENST00000219905.7:c.1650G>T	p.Gln550His	p.Q550H	ENST00000219905	NM_001164273.1	550	caG/caT																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43712503	43712503	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	61	639	0	ENST00000382044.4:c.4681G>T	p.Gly1561Ter	p.G1561*	ENST00000382044	NM_001141980.1	1561	Gga/Tga																																																																														
IGF1R	0	MSKCC	GRCh37	15	99467815	99467815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	38	464	0	ENST00000268035.6:c.2684G>T	p.Arg895Leu	p.R895L	ENST00000268035	NM_000875.3	895	cGg/cTg																																																																														
FANCA	0	MSKCC	GRCh37	16	89851353	89851353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	41	553	0	ENST00000389301.3:c.1379G>C	p.Arg460Pro	p.R460P	ENST00000389301	NM_000135.2	460	cGa/cCa																																																																														
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	113	491	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
AURKB	0	MSKCC	GRCh37	17	8110638	8110638	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	172	706	0	ENST00000585124.1:c.254A>C	p.Lys85Thr	p.K85T	ENST00000585124	NM_004217.3	85	aAa/aCa																																																																														
RAD51D	0	MSKCC	GRCh37	17	33428017	33428017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	133	668	0	ENST00000335858.7:c.606G>T	p.Trp202Cys	p.W202C	ENST00000335858	NM_133629.2	202	tgG/tgT																																																																														
CDK12	0	MSKCC	GRCh37	17	37619355	37619355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	17	263	0	ENST00000447079.4:c.1031G>A	p.Arg344Gln	p.R344Q	ENST00000447079	NM_015083.1	344	cGg/cAg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37876086	37876086	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	54	525	0	ENST00000269571.5:c.1945A>T	p.Ser649Cys	p.S649C	ENST00000269571		649	Agc/Tgc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41223064	41223064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	65	675	0	ENST00000357654.3:c.4867G>A	p.Ala1623Thr	p.A1623T	ENST00000357654	NM_007294.3	1623	Gct/Act																																																																														
SOX9	0	MSKCC	GRCh37	17	70119951	70119951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	40	371	1	ENST00000245479.2:c.953G>A	p.Ser318Asn	p.S318N	ENST00000245479	NM_000346.3	318	aGc/aAc																																																																														
YES1	0	MSKCC	GRCh37	18	745968	745968	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	35	635	0	ENST00000314574.4:c.554G>C	p.Arg185Thr	p.R185T	ENST00000314574	NM_005433.3	185	aGa/aCa																																																																														
INSR	0	MSKCC	GRCh37	19	7267515	7267515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	89	613	0	ENST00000302850.5:c.493G>T	p.Asp165Tyr	p.D165Y	ENST00000302850	NM_000208.2	165	Gat/Tat																																																																														
XPO1	0	MSKCC	GRCh37	2	61709627	61709627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	70	272	1	ENST00000401558.2:c.2860G>A	p.Glu954Lys	p.E954K	ENST00000401558	NM_003400.3	954	Gaa/Aaa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212543816	212543816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	38	593	0	ENST00000342788.4:c.1583G>C	p.Arg528Thr	p.R528T	ENST00000342788	NM_005235.2	528	aGa/aCa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812225	212812225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	115	461	0	ENST00000342788.4:c.351G>T	p.Leu117Phe	p.L117F	ENST00000342788	NM_005235.2	117	ttG/ttT																																																																														
GATA2	0	MSKCC	GRCh37	3	128205808	128205808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	92	422	0	ENST00000341105.2:c.67G>A	p.Asp23Asn	p.D23N	ENST00000341105	NM_032638.4	23	Gac/Aac																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665443	138665443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	108	588	1	ENST00000330315.3:c.122G>A	p.Gly41Asp	p.G41D	ENST00000330315	NM_023067.3	41	gGc/gAc																																																																														
ATR	0	MSKCC	GRCh37	3	142275300	142275300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	112	718	0	ENST00000350721.4:c.2003G>T	p.Arg668Leu	p.R668L	ENST00000350721	NM_001184.3	668	cGg/cTg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55138597	55138597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	107	538	0	ENST00000257290.5:c.1274A>G	p.His425Arg	p.H425R	ENST00000257290	NM_006206.4	425	cAt/cGt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197721	66197721	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	61	582	1	ENST00000273854.3:c.2978C>A	p.Ser993Ter	p.S993*	ENST00000273854	NM_004439.5	993	tCa/tAa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66230786	66230786	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	64	491	0	ENST00000273854.3:c.2185G>T	p.Gly729Ter	p.G729*	ENST00000273854	NM_004439.5	729	Gga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187629148	187629148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	66	574	0	ENST00000441802.2:c.1834C>A	p.Leu612Met	p.L612M	ENST00000441802	NM_005245.3	612	Ctg/Atg																																																																														
TERT	0	MSKCC	GRCh37	5	1293662	1293662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	166	713	0	ENST00000310581.5:c.1339C>A	p.Arg447Ser	p.R447S	ENST00000310581	NM_198253.2	447	Cgc/Agc																																																																														
TERT	0	MSKCC	GRCh37	5	1294247	1294247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	75	666	0	ENST00000310581.5:c.754G>T	p.Gly252Trp	p.G252W	ENST00000310581	NM_198253.2	252	Ggg/Tgg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169276	32169276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	88	455	2	ENST00000375023.3:c.3757C>A	p.Pro1253Thr	p.P1253T	ENST00000375023	NM_004557.3	1253	Cca/Aca																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652073	36652073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	85	672	0	ENST00000244741.5:c.195G>T	p.Trp65Cys	p.W65C	ENST00000244741	NM_000389.4	65	tgG/tgT																																																																														
ARID1B	0	MSKCC	GRCh37	6	157406022	157406022	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	33	438	0	ENST00000346085.5:c.2264C>G	p.Ser755Cys	p.S755C	ENST00000346085	NM_020732.3	755	tCt/tGt																																																																														
CARD11	0	MSKCC	GRCh37	7	2978465	2978465	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	88	499	0	ENST00000396946.4:c.865G>T	p.Ala289Ser	p.A289S	ENST00000396946	NM_032415.4	289	Gcc/Tcc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38274884	38274884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	38	753	0	ENST00000425967.3:c.1696A>G	p.Met566Val	p.M566V	ENST00000425967	NM_001174067.1	566	Atg/Gtg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528774	8528774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	45	293	1	ENST00000356435.5:c.358C>A	p.Gln120Lys	p.Q120K	ENST00000356435		120	Caa/Aaa																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409494	80409494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	115	624	0	ENST00000286548.4:c.620G>T	p.Gly207Val	p.G207V	ENST00000286548	NM_002072.3	207	gGg/gTg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87570404	87570404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	110	695	1	ENST00000277120.3:c.2144G>A	p.Arg715Gln	p.R715Q	ENST00000277120		715	cGg/cAg																																																																														
KLF4	0	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	188	999	0	ENST00000374672.4:c.1225A>G	p.Lys409Glu	p.K409E	ENST00000374672	NM_004235.4	409	Aag/Gag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399240	139399240	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	97	599	0	ENST00000277541.6:c.4903G>T	p.Ala1635Ser	p.A1635S	ENST00000277541	NM_017617.3	1635	Gcc/Tcc																																																																														
CRLF2	0	MSKCC	GRCh37	X	1314991	1314991	+	downstream_gene_variant	3'Flank	SNP	G	G	C			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	63	629	0				ENST00000381566																																																																																	
RBM10	0	MSKCC	GRCh37	X	47044937	47044937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	124	437	0	ENST00000329236.7:c.2029G>T	p.Asp677Tyr	p.D677Y	ENST00000329236	NM_001204466.1	677	Gac/Tac																																																																														
BTK	0	MSKCC	GRCh37	X	100611800	100611800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	66	280	0	ENST00000308731.7:c.1321G>A	p.Glu441Lys	p.E441K	ENST00000308731	NM_000061.2	441	Gaa/Aaa																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871724	35871724	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1213	169	512	0	ENST00000216797.5:c.782C>G	p.Pro261Arg	p.P261R	ENST00000216797	NM_020529.2	261	cCa/cGa																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114674	73114674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	31	572	0	ENST00000356692.5:c.1055C>G	p.Ser352Cys	p.S352C	ENST00000356692		352	tCt/tGt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	105	478	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	46	360	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	53	296	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	103	602	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ATM	0	MSKCC	GRCh37	11	108200960	108200960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	62	365	1	ENST00000278616.4:c.7327C>T	p.Arg2443Ter	p.R2443*	ENST00000278616	NM_000051.3	2443	Cga/Tga																																																																														
JUN	0	MSKCC	GRCh37	1	59248312	59248313	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	18	73	0	ENST00000371222.2:c.430dup	p.Ala144GlyfsTer166	p.A144Gfs*166	ENST00000371222	NM_002228.3	144	gct/gGct																																																																														
ATM	0	MSKCC	GRCh37	11	108180886	108180886	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	20	240	0	ENST00000278616.4:c.5763-1G>C		p.X1921_splice	ENST00000278616	NM_000051.3	1921																																																																															
SOX9	0	MSKCC	GRCh37	17	70119786	70119787	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGA			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	186	584	0	ENST00000245479.2:c.792_795dup	p.Pro266ThrfsTer31	p.P266Tfs*31	ENST00000245479	NM_000346.3	263	ggc/ggCAGAc																																																																														
RAF1	0	MSKCC	GRCh37	3	12660111	12660111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	31	488	0	ENST00000251849.4:c.110G>C	p.Gly37Ala	p.G37A	ENST00000251849	NM_002880.3	37	gGc/gCc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016565	12016565	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	78	331	0	ENST00000353533.5:c.701A>T	p.Asn234Ile	p.N234I	ENST00000353533	NM_003010.3	234	aAt/aTt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	116	725	0	ENST00000347630.2:c.393G>T	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgT																																																																														
ERG	0	MSKCC	GRCh37	21	39755554	39755554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	140	478	0	ENST00000288319.7:c.1211C>T	p.Pro404Leu	p.P404L	ENST00000288319	NM_182918.3	404	cCg/cTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	123	482	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	110	423	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	435	513	0	ENST00000288135.5:c.1676T>C	p.Val559Ala	p.V559A	ENST00000288135	NM_000222.2	559	gTt/gCt																																																																														
RAD50	0	MSKCC	GRCh37	5	131944387	131944388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AATACAAGCAACAAAATAGCACAGGATAAAGTAAGATTTCATTTATATATTTACTTATC			P-0017811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	40	558	0	ENST00000265335.6:c.2802_2829+31dup		p.-933fs	ENST00000265335		933	-/AATACAAGCAACAAAATAGCACAGGATAAAGTAAGATTTCATTTATATATTTACTTATC																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851285	156851285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	210	520	0	ENST00000524377.1:c.2242C>T	p.Arg748Trp	p.R748W	ENST00000524377	NM_002529.3	748	Cgg/Tgg																																																																														
SYK	0	MSKCC	GRCh37	9	93606304	93606304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	221	603	0	ENST00000375746.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000375746	NM_001174167.1	42	Cgc/Tgc																																																																														
CDH1	0	MSKCC	GRCh37	16	68862107	68862107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	169	467	0	ENST00000261769.5:c.2195G>A	p.Arg732Gln	p.R732Q	ENST00000261769	NM_004360.3	732	cGg/cAg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061797	38061797	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	328	748	0	ENST00000250448.2:c.192C>G	p.Phe64Leu	p.F64L	ENST00000250448	NM_004496.3	64	ttC/ttG																																																																														
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	669	678	1	ENST00000269305.4:c.614A>C	p.Tyr205Ser	p.Y205S	ENST00000269305	NM_001126112.2	205	tAt/tCt																																																																														
CBL	0	MSKCC	GRCh37	11	119148883	119148883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	193	306	0	ENST00000264033.4:c.1103A>G	p.Tyr368Cys	p.Y368C	ENST00000264033	NM_005188.3	368	tAt/tGt																																																																														
NF1	0	MSKCC	GRCh37	17	29661986	29661990	+	frameshift_variant	Frame_Shift_Del	DEL	GACCA	GACCA	-			P-0017815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	552	487	1	ENST00000358273.4:c.5943_5947delGACCA	p.Met1981IlefsTer3	p.M1981Ifs*3	ENST00000358273	NM_001042492.2	1981	atGACCAtc/attc																																																																														
EGFR	0	MSKCC	GRCh37	7	55223633	55223633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	335	384	3	ENST00000275493.2:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000275493	NM_005228.3	334	Cgc/Tgc																																																																														
ATRX	0	MSKCC	GRCh37	X	76909668	76909668	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	437	407	1	ENST00000373344.5:c.4237G>T	p.Glu1413Ter	p.E1413*	ENST00000373344	NM_000489.3	1413	Gaa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0017817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1598	408	540	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32190321	32190321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	137	455	0	ENST00000375023.3:c.418C>T	p.Arg140Cys	p.R140C	ENST00000375023	NM_004557.3	140	Cgc/Tgc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798111	45798111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	234	605	1	ENST00000372115.3:c.698G>A	p.Arg233Gln	p.R233Q	ENST00000372115	NM_001048171.1	233	cGa/cAa																																																																														
RECQL	0	MSKCC	GRCh37	12	21624530	21624530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	175	618	0	ENST00000421138.2:c.1499T>C	p.Leu500Pro	p.L500P	ENST00000421138		500	cTg/cCg																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4110566	4110566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	359	553	1	ENST00000262948.5:c.391G>T	p.Val131Leu	p.V131L	ENST00000262948	NM_030662.3	131	Gtg/Ttg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	184	564	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	71	545	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952088	178952088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	84	433	0	ENST00000263967.3:c.3143A>G	p.His1048Arg	p.H1048R	ENST00000263967	NM_006218.2	1048	cAt/cGt																																																																														
MED12	0	MSKCC	GRCh37	X	70339629	70339629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	220	640	1	ENST00000374080.3:c.298G>A	p.Asp100Asn	p.D100N	ENST00000374080		100	Gat/Aat																																																																														
KIT	0	MSKCC	GRCh37	4	55593597	55593611	+	inframe_deletion	In_Frame_Del	DEL	GTACAGTGGAAGGTT	GTACAGTGGAAGGTT	-			P-0017819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	227	477	0	ENST00000288135.5:c.1665_1679delACAGTGGAAGGTTGT	p.Gln556_Val560del	p.Q556_V560del	ENST00000288135	NM_000222.2	555	GTACAGTGGAAGGTT/-																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	227	379	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	288	499	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																														
VHL	0	MSKCC	GRCh37	3	10188263	10188263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	213	717	0	ENST00000256474.2:c.408delT	p.Phe136LeufsTer23	p.F136Lfs*23	ENST00000256474	NM_000551.3	136	Ttt/tt																																																																														
RRAGC	0	MSKCC	GRCh37	1	39322637	39322637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	119	720	0	ENST00000373001.3:c.355G>C	p.Gly119Arg	p.G119R	ENST00000373001	NM_022157.3	119	Ggg/Cgg																																																																														
VTCN1	0	MSKCC	GRCh37	1	117695815	117695815	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	65	487	0	ENST00000369458.3:c.622A>G	p.Met208Val	p.M208V	ENST00000369458	NM_024626.3	208	Atg/Gtg																																																																														
CDH1	0	MSKCC	GRCh37	16	68845764	68845764	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0017824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	96	338	0	ENST00000261769.5:c.1008+2T>G		p.X336_splice	ENST00000261769	NM_004360.3	336																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	120	415	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TAP1	0	MSKCC	GRCh37	6	32821403	32821403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	169	681	0	ENST00000354258.4:c.191C>G	p.Ser64Cys	p.S64C	ENST00000354258	NM_000593.5	64	tCt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577567	7577568	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0017826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	515	549	0	ENST00000269305.4:c.713_714delGT	p.Cys238Ter	p.C238*	ENST00000269305	NM_001126112.2	238	tGT/t																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	267	540	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
ESR1	0	MSKCC	GRCh37	6	152332868	152332868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	378	408	0	ENST00000206249.3:c.1174G>A	p.Val392Ile	p.V392I	ENST00000206249	NM_000125.3	392	Gtc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	447	678	2	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	232	448	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
NF1	0	MSKCC	GRCh37	17	29553470	29553470	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	147	601	2	ENST00000358273.4:c.2019C>A	p.Cys673Ter	p.C673*	ENST00000358273	NM_001042492.2	673	tgC/tgA																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591977	48591977	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	187	290	0	ENST00000342988.3:c.1139+1G>T		p.X380_splice	ENST00000342988	NM_005359.5	380																																																																															
NOTCH3	0	MSKCC	GRCh37	19	15276650	15276650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	327	585	0	ENST00000263388.2:c.5615G>C	p.Gly1872Ala	p.G1872A	ENST00000263388	NM_000435.2	1872	gGc/gCc																																																																														
BRD4	0	MSKCC	GRCh37	19	15378304	15378305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	321	558	0	ENST00000263377.2:c.481dup	p.Ile161AsnfsTer3	p.I161Nfs*3	ENST00000263377	NM_058243.2	161	ata/aAta																																																																														
XPO1	0	MSKCC	GRCh37	2	61761029	61761029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	30	292	0	ENST00000401558.2:c.4C>T	p.Pro2Ser	p.P2S	ENST00000401558	NM_003400.3	2	Cca/Tca																																																																														
DROSHA	0	MSKCC	GRCh37	5	31409192	31409192	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	129	609	0	ENST00000344624.3:c.3825A>T	p.Glu1275Asp	p.E1275D	ENST00000344624		1275	gaA/gaT																																																																														
APC	0	MSKCC	GRCh37	5	112175455	112175456	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	87	324	2	ENST00000257430.4:c.4164_4165delTT	p.Ser1389CysfsTer5	p.S1389Cfs*5	ENST00000257430	NM_000038.5	1388	acTTct/acct																																																																														
BTK	0	MSKCC	GRCh37	X	100615635	100615635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	537	633	2	ENST00000308731.7:c.697C>A	p.Leu233Ile	p.L233I	ENST00000308731	NM_000061.2	233	Cta/Ata																																																																														
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	591	672	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	38	690	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	168	261	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
IL7R	0	MSKCC	GRCh37	5	35873661	35873661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	117	498	1	ENST00000303115.3:c.617G>A	p.Arg206Gln	p.R206Q	ENST00000303115	NM_002185.3	206	cGa/cAa																																																																														
RAB35	0	MSKCC	GRCh37	12	120536873	120536873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	324	721	4	ENST00000229340.5:c.313G>A	p.Glu105Lys	p.E105K	ENST00000229340	NM_006861.6	105	Gaa/Aaa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554161	63554161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	250	794	1	ENST00000307078.5:c.578C>A	p.Ser193Tyr	p.S193Y	ENST00000307078	NM_004655.3	193	tCt/tAt																																																																														
BRD4	0	MSKCC	GRCh37	19	15350614	15350614	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201646539		P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	844	812	0	ENST00000263377.2:c.3301G>A	p.Val1101Met	p.V1101M	ENST00000263377	NM_058243.2	1101	Gtg/Atg																																																																														
ALK	0	MSKCC	GRCh37	2	29917775	29917775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	558	650	1	ENST00000389048.3:c.893C>T	p.Ala298Val	p.A298V	ENST00000389048	NM_004304.4	298	gCc/gTc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849089	156849089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	199	843	0	ENST00000524377.1:c.1981G>A	p.Gly661Arg	p.G661R	ENST00000524377	NM_002529.3	661	Gga/Aga																																																																														
RET	0	MSKCC	GRCh37	10	43610162	43610162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	133	675	0	ENST00000355710.3:c.2114C>T	p.Ser705Phe	p.S705F	ENST00000355710	NM_020975.4	705	tCc/tTc																																																																														
FGF4	0	MSKCC	GRCh37	11	69588123	69588123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	150	579	0	ENST00000168712.1:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000168712	NM_002007.2	192	cGa/cAa																																																																														
PAK1	0	MSKCC	GRCh37	11	77090994	77090994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	178	650	0	ENST00000356341.3:c.236C>T	p.Ser79Leu	p.S79L	ENST00000356341	NM_002576.4	79	tCa/tTa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204881	94204881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	143	490	0	ENST00000323929.3:c.704A>G	p.Asp235Gly	p.D235G	ENST00000323929	NM_005591.3	235	gAt/gGt																																																																														
ATM	0	MSKCC	GRCh37	11	108199914	108199914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	134	457	0	ENST00000278616.4:c.7256G>A	p.Arg2419Lys	p.R2419K	ENST00000278616	NM_000051.3	2419	aGa/aAa																																																																														
SDHD	0	MSKCC	GRCh37	11	111959680	111959680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	84	330	2	ENST00000375549.3:c.259C>T	p.Pro87Ser	p.P87S	ENST00000375549	NM_003002.3	87	Cct/Tct																																																																														
CCND2	0	MSKCC	GRCh37	12	4409161	4409161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	98	479	0	ENST00000261254.3:c.856G>A	p.Asp286Asn	p.D286N	ENST00000261254	NM_001759.3	286	Gat/Aat																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18552600	18552600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	109	364	0	ENST00000266497.5:c.2011G>A	p.Glu671Lys	p.E671K	ENST00000266497		671	Gaa/Aaa																																																																														
MSI1	0	MSKCC	GRCh37	12	120795639	120795639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	144	576	0	ENST00000257552.2:c.514C>T	p.His172Tyr	p.H172Y	ENST00000257552	NM_002442.3	172	Cat/Tat																																																																														
HNF1A	0	MSKCC	GRCh37	12	121437154	121437154	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	180	1033	1	ENST00000257555.6:c.1585A>G	p.Asn529Asp	p.N529D	ENST00000257555		529	Aac/Gac																																																																														
PRKD1	0	MSKCC	GRCh37	14	30095720	30095720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	219	800	0	ENST00000331968.5:c.1768G>A	p.Gly590Ser	p.G590S	ENST00000331968	NM_002742.2	590	Ggt/Agt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680748	88680748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	178	670	1	ENST00000360948.2:c.509G>A	p.Trp170Ter	p.W170*	ENST00000360948	NM_001012338.2	170	tGg/tAg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807367	3807367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	116	456	0	ENST00000262367.5:c.3620C>T	p.Ser1207Phe	p.S1207F	ENST00000262367	NM_004380.2	1207	tCc/tTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858202	9858202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	96	450	1	ENST00000330684.3:c.3199C>T	p.Arg1067Trp	p.R1067W	ENST00000330684	NM_001134407.1	1067	Cgg/Tgg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858660	9858660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	93	408	0	ENST00000330684.3:c.2741G>A	p.Arg914Lys	p.R914K	ENST00000330684	NM_001134407.1	914	aGa/aAa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9892188	9892188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	149	698	0	ENST00000330684.3:c.2302G>A	p.Gly768Ser	p.G768S	ENST00000330684	NM_001134407.1	768	Ggc/Agc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81819620	81819620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	81	485	1	ENST00000359376.3:c.26C>T	p.Ser9Phe	p.S9F	ENST00000359376	NM_002661.3	9	tCc/tTc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346685	89346685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	57	369	0	ENST00000301030.4:c.6265G>A	p.Val2089Met	p.V2089M	ENST00000301030	NM_001256183.1	2089	Gtg/Atg																																																																														
NF1	0	MSKCC	GRCh37	17	29557285	29557286	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	109	421	0	ENST00000358273.4:c.2998_2999delCG	p.Arg1000CysfsTer20	p.R1000Cfs*20	ENST00000358273	NM_001042492.2	1000	CGt/t																																																																														
NF1	0	MSKCC	GRCh37	17	29662044	29662044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	123	501	0	ENST00000358273.4:c.6001G>T	p.Gly2001Trp	p.G2001W	ENST00000358273	NM_001042492.2	2001	Ggg/Tgg																																																																														
NF1	0	MSKCC	GRCh37	17	29679366	29679366	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	123	540	0	ENST00000358273.4:c.7549C>T	p.Arg2517Ter	p.R2517*	ENST00000358273	NM_001042492.2	2517	Cga/Tga																																																																														
ERBB2	0	MSKCC	GRCh37	17	37882083	37882083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	108	439	0	ENST00000269571.5:c.2849A>G	p.Asp950Gly	p.D950G	ENST00000269571		950	gAt/gGt																																																																														
STAT5B	0	MSKCC	GRCh37	17	40362470	40362470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	207	802	0	ENST00000293328.3:c.1726G>A	p.Gly576Ser	p.G576S	ENST00000293328	NM_012448.3	576	Ggt/Agt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41203094	41203094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	166	757	0	ENST00000357654.3:c.5318C>T	p.Thr1773Ile	p.T1773I	ENST00000357654	NM_007294.3	1773	aCc/aTc																																																																														
RNF43	0	MSKCC	GRCh37	17	56435092	56435092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	139	523	0	ENST00000407977.2:c.2045C>T	p.Pro682Leu	p.P682L	ENST00000407977		682	cCc/cTc																																																																														
H3F3B	0	MSKCC	GRCh37	17	73775165	73775165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	109	525	0	ENST00000254810.4:c.91C>T	p.Pro31Ser	p.P31S	ENST00000254810	NM_005324.3	31	Ccc/Tcc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78882691	78882691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	145	684	0	ENST00000306801.3:c.2482G>A	p.Asp828Asn	p.D828N	ENST00000306801	NM_020761.2	828	Gac/Aac																																																																														
DOT1L	0	MSKCC	GRCh37	19	2227028	2227028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	146	615	1	ENST00000398665.3:c.4508C>T	p.Ala1503Val	p.A1503V	ENST00000398665	NM_032482.2	1503	gCc/gTc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5245945	5245945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	168	785	0	ENST00000357368.4:c.830A>G	p.Lys277Arg	p.K277R	ENST00000357368	NM_002850.3	277	aAg/aGg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210694	36210694	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	162	689	0	ENST00000222270.7:c.448delC	p.Arg150GlufsTer17	p.R150Efs*17	ENST00000222270	NM_014727.1	149	Ccc/cc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211154	36211154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	229	1070	2	ENST00000222270.7:c.905C>T	p.Pro302Leu	p.P302L	ENST00000222270	NM_014727.1	302	cCc/cTc																																																																														
CIC	0	MSKCC	GRCh37	19	42791594	42791594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	130	546	2	ENST00000575354.2:c.575C>T	p.Pro192Leu	p.P192L	ENST00000575354	NM_015125.3	192	cCc/cTc																																																																														
CIC	0	MSKCC	GRCh37	19	42791782	42791782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	136	598	0	ENST00000575354.2:c.668C>T	p.Pro223Leu	p.P223L	ENST00000575354	NM_015125.3	223	cCc/cTc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46609648	46609648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	209	830	0	ENST00000263734.3:c.2372C>T	p.Pro791Leu	p.P791L	ENST00000263734	NM_001430.4	791	cCc/cTc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794364	242794364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	143	843	0	ENST00000334409.5:c.578C>T	p.Ser193Phe	p.S193F	ENST00000334409	NM_005018.2	193	tCc/tTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9520246	9520246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	155	542	0	ENST00000353224.5:c.2023G>A	p.Gly675Arg	p.G675R	ENST00000353224	NM_177990.2	675	Gga/Aga																																																																														
PAK7	0	MSKCC	GRCh37	20	9547022	9547022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	39	165	0	ENST00000353224.5:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000353224	NM_177990.2	334	Gat/Aat																																																																														
SRC	0	MSKCC	GRCh37	20	36031230	36031230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	157	636	0	ENST00000358208.4:c.1349C>T	p.Ser450Phe	p.S450F	ENST00000358208		450	tCc/tTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743928	40743928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	252	560	0	ENST00000373198.4:c.3067G>A	p.Asp1023Asn	p.D1023N	ENST00000373198	NM_133170.3	1023	Gac/Aac																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100912	41100912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	244	505	0	ENST00000373198.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000373198	NM_133170.3	482	Gaa/Aaa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41420092	41420092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	134	290	0	ENST00000373198.4:c.229G>A	p.Val77Met	p.V77M	ENST00000373198	NM_133170.3	77	Gtg/Atg																																																																														
GNAS	0	MSKCC	GRCh37	20	57478737	57478737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	81	337	0	ENST00000371085.3:c.323C>T	p.Ala108Val	p.A108V	ENST00000371085	NM_000516.4	108	gCc/gTc																																																																														
RAF1	0	MSKCC	GRCh37	3	12645683	12645683	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	57	178	0	ENST00000251849.4:c.786T>A	p.Asn262Lys	p.N262K	ENST00000251849	NM_002880.3	262	aaT/aaA																																																																														
SETD2	0	MSKCC	GRCh37	3	47059133	47059133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	117	553	0	ENST00000409792.3:c.7528C>T	p.Arg2510Cys	p.R2510C	ENST00000409792	NM_014159.6	2510	Cgc/Tgc																																																																														
SETD2	0	MSKCC	GRCh37	3	47164832	47164832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	82	348	0	ENST00000409792.3:c.1294C>T	p.Arg432Cys	p.R432C	ENST00000409792	NM_014159.6	432	Cgt/Tgt																																																																														
ATR	0	MSKCC	GRCh37	3	142215915	142215915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	110	482	0	ENST00000350721.4:c.5678C>T	p.Ser1893Phe	p.S1893F	ENST00000350721	NM_001184.3	1893	tCc/tTc																																																																														
TP63	0	MSKCC	GRCh37	3	189526109	189526109	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	163	682	3	ENST00000264731.3:c.373C>T	p.Gln125Ter	p.Q125*	ENST00000264731	NM_003722.4	125	Cag/Tag																																																																														
TP63	0	MSKCC	GRCh37	3	189612085	189612085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	137	522	0	ENST00000264731.3:c.1837C>T	p.Pro613Ser	p.P613S	ENST00000264731	NM_003722.4	613	Cct/Tct																																																																														
TET2	0	MSKCC	GRCh37	4	106156730	106156730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	103	438	0	ENST00000380013.4:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000380013	NM_001127208.2	544	cGa/cAa																																																																														
TET2	0	MSKCC	GRCh37	4	106164779	106164779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	85	364	0	ENST00000380013.4:c.3647G>A	p.Arg1216Gln	p.R1216Q	ENST00000380013	NM_001127208.2	1216	cGa/cAa																																																																														
FAT1	0	MSKCC	GRCh37	4	187538346	187538346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	143	488	0	ENST00000441802.2:c.8888C>T	p.Pro2963Leu	p.P2963L	ENST00000441802	NM_005245.3	2963	cCt/cTt																																																																														
FAT1	0	MSKCC	GRCh37	4	187542685	187542685	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	155	522	0	ENST00000441802.2:c.5055C>G	p.Phe1685Leu	p.F1685L	ENST00000441802	NM_005245.3	1685	ttC/ttG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	85	458	0				ENST00000310581	NM_198253.2																																																																																
CSF1R	0	MSKCC	GRCh37	5	149460362	149460362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	98	402	0	ENST00000286301.3:c.275G>A	p.Gly92Glu	p.G92E	ENST00000286301	NM_005211.3	92	gGa/gAa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520527	176520527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	152	692	2	ENST00000292408.4:c.1372C>T	p.Pro458Ser	p.P458S	ENST00000292408	NM_213647.1	458	Cca/Tca																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32185817	32185817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	122	673	0	ENST00000375023.3:c.1579G>A	p.Asp527Asn	p.D527N	ENST00000375023	NM_004557.3	527	Gat/Aat																																																																														
DAXX	0	MSKCC	GRCh37	6	33286847	33286847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	113	485	0	ENST00000374542.5:c.2090C>T	p.Ser697Phe	p.S697F	ENST00000374542	NM_001141970.1	697	tCc/tTc																																																																														
FYN	0	MSKCC	GRCh37	6	112015901	112015901	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	128	456	0	ENST00000368678.4:c.1040T>C	p.Leu347Ser	p.L347S	ENST00000368678		347	tTa/tCa																																																																														
CARD11	0	MSKCC	GRCh37	7	2946289	2946289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1871	299	702	1	ENST00000396946.4:c.3448G>A	p.Asp1150Asn	p.D1150N	ENST00000396946	NM_032415.4	1150	Gac/Aac																																																																														
CARD11	0	MSKCC	GRCh37	7	2963954	2963954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1466	289	560	0	ENST00000396946.4:c.1853C>T	p.Ser618Phe	p.S618F	ENST00000396946	NM_032415.4	618	tCc/tTc																																																																														
HGF	0	MSKCC	GRCh37	7	81332070	81332070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	108	365	0	ENST00000222390.5:c.2014G>A	p.Asp672Asn	p.D672N	ENST00000222390	NM_000601.4	672	Gat/Aat																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508561	106508561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	145	266	0	ENST00000359195.3:c.555G>A	p.Met185Ile	p.M185I	ENST00000359195	NM_002649.2	185	atG/atA																																																																														
SOX17	0	MSKCC	GRCh37	8	55371996	55371996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	133	658	0	ENST00000297316.4:c.686G>A	p.Gly229Asp	p.G229D	ENST00000297316	NM_022454.3	229	gGc/gAc																																																																														
PREX2	0	MSKCC	GRCh37	8	68972918	68972918	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	127	371	0	ENST00000288368.4:c.1243T>C	p.Phe415Leu	p.F415L	ENST00000288368	NM_024870.2	415	Ttt/Ctt																																																																														
PREX2	0	MSKCC	GRCh37	8	69020539	69020539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	165	594	2	ENST00000288368.4:c.2911G>A	p.Asp971Asn	p.D971N	ENST00000288368	NM_024870.2	971	Gat/Aat																																																																														
PREX2	80243	MSKCC	GRCh37	8	69050711	69050711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	146	537	0	ENST00000288368.4:c.4046C>T	p.Ser1349Phe	p.S1349F	ENST00000288368	NM_024870.2	1349	tCc/tTc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964374	70964374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	100	381	0	ENST00000276594.2:c.1654G>A	p.Gly552Arg	p.G552R	ENST00000276594	NM_024504.3	552	Ggg/Agg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8317926	8317926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	96	433	0	ENST00000356435.5:c.5687C>T	p.Ser1896Phe	p.S1896F	ENST00000356435		1896	tCc/tTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8331589	8331589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	123	478	0	ENST00000356435.5:c.5527C>T	p.His1843Tyr	p.H1843Y	ENST00000356435		1843	Cat/Tat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8460526	8460526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	165	591	0	ENST00000356435.5:c.3760G>A	p.Asp1254Asn	p.D1254N	ENST00000356435		1254	Gat/Aat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486082	8486082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	124	576	0	ENST00000356435.5:c.2735C>T	p.Ser912Phe	p.S912F	ENST00000356435		912	tCc/tTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521384	8521384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	157	694	1	ENST00000356435.5:c.854G>A	p.Gly285Glu	p.G285E	ENST00000356435		285	gGa/gAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521502	8521502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	112	563	0	ENST00000356435.5:c.736G>A	p.Glu246Lys	p.E246K	ENST00000356435		246	Gaa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528711	8528711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	133	372	1	ENST00000356435.5:c.421C>T	p.Arg141Cys	p.R141C	ENST00000356435		141	Cgc/Tgc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636812	8636812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	125	548	0	ENST00000356435.5:c.97C>T	p.Gln33Ter	p.Q33*	ENST00000356435		33	Cag/Tag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970918	21970918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	195	855	0	ENST00000304494.5:c.440C>T	p.Ala147Val	p.A147V	ENST00000304494	NM_000077.4	147	gCc/gTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970918	21970918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	195	855	0	ENST00000304494.5:c.440C>T	p.Ala147Val	p.A147V	ENST00000304494	NM_000077.4	147	gCc/gTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971149	21971149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	74	492	0	ENST00000304494.5:c.209C>T	p.Pro70Leu	p.P70L	ENST00000304494	NM_000077.4	70	cCc/cTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400128	139400128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	198	823	2	ENST00000277541.6:c.4220C>T	p.Ser1407Phe	p.S1407F	ENST00000277541	NM_017617.3	1407	tCc/tTc																																																																														
ARAF	0	MSKCC	GRCh37	X	47429022	47429022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	114	263	0	ENST00000377045.4:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000377045	NM_001654.4	462	cCc/cTc																																																																														
PPP6C	0	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	148	513	1	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023151	27023179	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	-			P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	110	75	1	ENST00000324856.7:c.267_295del	p.Ser90ProfsTer11	p.S90Pfs*11	ENST00000324856	NM_006015.4	86	gGCGGAGCCGGCAGCGGCGGCGGGCCCGGC/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7579432	7579433	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	361	584	0	ENST00000269305.4:c.254dup	p.Ala86CysfsTer63	p.A86Cfs*63	ENST00000269305	NM_001126112.2	85	cct/ccCt																																																																														
FGF3	0	MSKCC	GRCh37	11	69631176	69631176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	412	731	1	ENST00000334134.2:c.236C>T	p.Thr79Met	p.T79M	ENST00000334134	NM_005247.2	79	aCg/aTg																																																																														
YES1	0	MSKCC	GRCh37	18	756806	756806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	145	442	0	ENST00000314574.4:c.22G>A	p.Glu8Lys	p.E8K	ENST00000314574	NM_005433.3	8	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112175907	112175907	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	114	414	0	ENST00000257430.4:c.4616C>G	p.Ser1539Ter	p.S1539*	ENST00000257430	NM_000038.5	1539	tCa/tGa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965643	93965643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	141	522	1	ENST00000369303.4:c.2285G>A	p.Arg762His	p.R762H	ENST00000369303	NM_004440.3	762	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	39	660	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1346	37	821	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
VHL	0	MSKCC	GRCh37	3	10183755	10183757	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0017835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	239	420	0	ENST00000256474.2:c.227_229delTCT	p.Phe76del	p.F76del	ENST00000256474	NM_000551.3	75	aTCTtc/atc																																																																														
ATM	0	MSKCC	GRCh37	11	108121619	108121619	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	93	367	0	ENST00000278616.4:c.1430delA	p.Lys477SerfsTer5	p.K477Sfs*5	ENST00000278616	NM_000051.3	476	cAa/ca																																																																														
STAG2	0	MSKCC	GRCh37	X	123220396	123220396	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0017835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	56	122	0	ENST00000218089.9:c.3054delG		p.X1018_splice	ENST00000218089	NM_001042749.1	1018																																																																															
TP53	0	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	682	482	0	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
PTEN	0	MSKCC	GRCh37	10	89717644	89717644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	181	305	0	ENST00000371953.3:c.669G>C	p.Lys223Asn	p.K223N	ENST00000371953	NM_000314.4	223	aaG/aaC																																																																														
GLI1	0	MSKCC	GRCh37	12	57864696	57864696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	587	457	0	ENST00000228682.2:c.2173C>A	p.Pro725Thr	p.P725T	ENST00000228682	NM_005269.2	725	Cca/Aca																																																																														
FLT1	0	MSKCC	GRCh37	13	29007984	29007984	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	99	178	0	ENST00000282397.4:c.785T>A	p.Val262Asp	p.V262D	ENST00000282397	NM_002019.4	262	gTt/gAt																																																																														
FLT1	0	MSKCC	GRCh37	13	29008201	29008201	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	98	164	0	ENST00000282397.4:c.670delC	p.Arg224AspfsTer7	p.R224Dfs*7	ENST00000282397	NM_002019.4	224	Cga/ga																																																																														
PRKD1	0	MSKCC	GRCh37	14	30135314	30135314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	55	398	0	ENST00000331968.5:c.504G>T	p.Trp168Cys	p.W168C	ENST00000331968	NM_002742.2	168	tgG/tgT																																																																														
NTRK3	0	MSKCC	GRCh37	15	88476331	88476331	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	212	400	0	ENST00000360948.2:c.1801G>C	p.Val601Leu	p.V601L	ENST00000360948	NM_001012338.2	601	Gtc/Ctc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678534	88678534	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	63	219	0	ENST00000360948.2:c.1002C>A	p.His334Gln	p.H334Q	ENST00000360948	NM_001012338.2	334	caC/caA																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602745	10602745	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	464	386	0	ENST00000171111.5:c.833C>G	p.Pro278Arg	p.P278R	ENST00000171111	NM_203500.1	278	cCg/cGg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42861458	42861458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	337	251	0	ENST00000398585.3:c.412G>T	p.Ala138Ser	p.A138S	ENST00000398585	NM_001135099.1	138	Gcc/Tcc																																																																														
TAP1	0	MSKCC	GRCh37	6	32819904	32819904	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	40	398	0	ENST00000354258.4:c.1006T>A	p.Phe336Ile	p.F336I	ENST00000354258	NM_000593.5	336	Ttc/Atc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874212	151874212	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	176	259	0	ENST00000262189.6:c.8326G>T	p.Glu2776Ter	p.E2776*	ENST00000262189	NM_170606.2	2776	Gaa/Taa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484362	8484362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	161	282	0	ENST00000356435.5:c.3170G>T	p.Gly1057Val	p.G1057V	ENST00000356435		1057	gGg/gTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8633452	8633452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	94	236	0	ENST00000356435.5:c.217G>A	p.Glu73Lys	p.E73K	ENST00000356435		73	Gag/Aag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412309	139412309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	369	394	1	ENST00000277541.6:c.1336G>T	p.Gly446Cys	p.G446C	ENST00000277541	NM_017617.3	446	Ggc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	59	346	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	62	396	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	80	300	1	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	66	259	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	61	289	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	50	317	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	48	255	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
PTPRS	0	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	23	222	0	ENST00000357368.4:c.1821delC	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41277275	41277275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	49	217	1	ENST00000349496.5:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000349496	NM_001904.3	582	Cgg/Tgg																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538846	23538846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	27	184	0	ENST00000380871.4:c.593C>T	p.Pro198Leu	p.P198L	ENST00000380871	NM_006167.3	198	cCg/cTg																																																																														
ALK	0	MSKCC	GRCh37	2	30143341	30143341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	53	347	0	ENST00000389048.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000389048	NM_004304.4	62	tCg/tTg																																																																														
SETD2	0	MSKCC	GRCh37	3	47165282	47165283	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	37	243	0	ENST00000409792.3:c.843dupA	p.Glu282ArgfsTer9	p.E282Rfs*9	ENST00000409792	NM_014159.6	281	-/A																																																																														
CALR	0	MSKCC	GRCh37	19	13050364	13050364	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	55	365	0	ENST00000316448.5:c.320delG	p.Gly107AlafsTer4	p.G107Afs*4	ENST00000316448	NM_004343.3	106	Ggg/gg																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	69	345	1	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	206	410	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	33	339	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	56	327	1	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	54	490	0	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
TAP2	0	MSKCC	GRCh37	6	32800564	32800564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	88	422	0	ENST00000374899.4:c.983C>T	p.Ala328Val	p.A328V	ENST00000374899	NM_018833.2	328	gCg/gTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223023	5223023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	42	289	0	ENST00000357368.4:c.2780C>T	p.Thr927Met	p.T927M	ENST00000357368	NM_002850.3	927	aCg/aTg																																																																														
CCND1	0	MSKCC	GRCh37	11	69465973	69465973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	54	315	1	ENST00000227507.2:c.811G>A	p.Ala271Thr	p.A271T	ENST00000227507	NM_053056.2	271	Gcc/Acc																																																																														
EED	0	MSKCC	GRCh37	11	85966301	85966301	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183646722		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	48	182	0	ENST00000263360.6:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000263360	NM_003797.3	133	cGg/cAg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118391565	118391565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	37	242	0	ENST00000534358.1:c.11483delA	p.Lys3828ArgfsTer31	p.K3828Rfs*31	ENST00000534358	NM_005933.3	3826	ttA/tt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489540	56489540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200724560		P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	64	279	0	ENST00000267101.3:c.2005C>T	p.Arg669Cys	p.R669C	ENST00000267101	NM_001982.3	669	Cgc/Tgc																																																																														
POLE	0	MSKCC	GRCh37	12	133236065	133236065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	38	286	4	ENST00000320574.5:c.3091G>A	p.Glu1031Lys	p.E1031K	ENST00000320574	NM_006231.2	1031	Gag/Aag																																																																														
FLT3	0	MSKCC	GRCh37	13	28624343	28624343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	67	284	0	ENST00000241453.7:c.631C>T	p.Pro211Ser	p.P211S	ENST00000241453	NM_004119.2	211	Cca/Tca																																																																														
DICER1	0	MSKCC	GRCh37	14	95571486	95571486	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	36	230	0	ENST00000343455.3:c.3191T>G	p.Leu1064Arg	p.L1064R	ENST00000343455	NM_177438.2	1064	cTt/cGt																																																																														
MAP2K1	5604	MSKCC	GRCh37	15	66782074	66782075	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	36	252	0	ENST00000307102.5:c.1047_1048del	p.Arg349SerfsTer16	p.R349Sfs*16	ENST00000307102	NM_002755.3	347	gcAGag/gcag																																																																														
TSC2	0	MSKCC	GRCh37	16	2121553	2121553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	67	371	1	ENST00000219476.3:c.1882C>T	p.Arg628Cys	p.R628C	ENST00000219476	NM_000548.3	628	Cgc/Tgc																																																																														
TSC2	0	MSKCC	GRCh37	16	2124310	2124310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	76	484	0	ENST00000219476.3:c.2465C>T	p.Ala822Val	p.A822V	ENST00000219476	NM_000548.3	822	gCg/gTg																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041768	14041768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	49	299	0	ENST00000311895.7:c.2315G>A	p.Arg772Gln	p.R772Q	ENST00000311895	NM_005236.2	772	cGa/cAa																																																																														
FANCA	0	MSKCC	GRCh37	16	89851308	89851308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	39	383	0	ENST00000389301.3:c.1424C>T	p.Thr475Met	p.T475M	ENST00000389301	NM_000135.2	475	aCg/aTg																																																																														
AURKB	0	MSKCC	GRCh37	17	8108557	8108557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	66	378	0	ENST00000585124.1:c.838G>A	p.Glu280Lys	p.E280K	ENST00000585124	NM_004217.3	280	Gag/Aag																																																																														
NF1	0	MSKCC	GRCh37	17	29553610	29553610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	24	153	0	ENST00000358273.4:c.2159G>A	p.Arg720Gln	p.R720Q	ENST00000358273	NM_001042492.2	720	cGg/cAg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78727859	78727859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	52	386	0	ENST00000306801.3:c.704C>T	p.Pro235Leu	p.P235L	ENST00000306801	NM_020761.2	235	cCg/cTg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45372130	45372131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	95	381	1	ENST00000262160.6:c.1038dup	p.Ala347CysfsTer2	p.A347Cfs*2	ENST00000262160	NM_005901.5	346	-/T																																																																														
AXL	0	MSKCC	GRCh37	19	41745129	41745129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	51	381	0	ENST00000301178.4:c.1195G>A	p.Val399Met	p.V399M	ENST00000301178	NM_021913.4	399	Gtg/Atg																																																																														
EPCAM	0	MSKCC	GRCh37	2	47600710	47600710	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	38	278	1	ENST00000263735.4:c.184+1G>A		p.X62_splice	ENST00000263735	NM_002354.2	62																																																																															
MSH2	0	MSKCC	GRCh37	2	47698135	47698135	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	82	366	0	ENST00000233146.2:c.1697delA	p.Asn566IlefsTer24	p.N566Ifs*24	ENST00000233146	NM_000251.2	565	Aaa/aa																																																																														
MSH6	0	MSKCC	GRCh37	2	48025856	48025857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	21	210	0	ENST00000234420.5:c.741dupA	p.Arg248ThrfsTer8	p.R248Tfs*8	ENST00000234420	NM_000179.2	245	ata/atAa																																																																														
BCL2L1	0	MSKCC	GRCh37	20	30309583	30309583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	69	399	1	ENST00000307677.4:c.439G>A	p.Gly147Ser	p.G147S	ENST00000307677	NM_138578.1	147	Ggc/Agc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42840391	42840391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	32	285	0	ENST00000398585.3:c.1357T>C	p.Tyr453His	p.Y453H	ENST00000398585	NM_001135099.1	453	Tat/Cat																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266471	41266471	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	32	254	0	ENST00000349496.5:c.268C>T	p.Arg90Ter	p.R90*	ENST00000349496	NM_001904.3	90	Cga/Tga																																																																														
MST1R	0	MSKCC	GRCh37	3	49934764	49934767	+	frameshift_variant	Frame_Shift_Del	DEL	ACAG	ACAG	-			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	46	426	0	ENST00000296474.3:c.2129_2132delCTGT	p.Ser710Ter	p.S710*	ENST00000296474	NM_002447.2	710	tCTGTa/ta																																																																														
MST1R	0	MSKCC	GRCh37	3	49940163	49940163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	53	327	0	ENST00000296474.3:c.880C>T	p.Arg294Trp	p.R294W	ENST00000296474	NM_002447.2	294	Cgg/Tgg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1906063	1906063	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	90	508	0	ENST00000382891.5:c.718G>C	p.Val240Leu	p.V240L	ENST00000382891	NM_133335.3	240	Gtt/Ctt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1941428	1941428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	111	393	2	ENST00000382891.5:c.1804C>T	p.Arg602Trp	p.R602W	ENST00000382891	NM_133335.3	602	Cgg/Tgg																																																																														
RASA1	0	MSKCC	GRCh37	5	86564482	86564482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	39	197	0	ENST00000274376.6:c.214C>A	p.Leu72Ile	p.L72I	ENST00000274376	NM_002890.2	72	Cta/Ata																																																																														
CSF1R	0	MSKCC	GRCh37	5	149435889	149435889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	58	397	0	ENST00000286301.3:c.2335G>A	p.Val779Met	p.V779M	ENST00000286301	NM_005211.3	779	Gtg/Atg																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225731	26225731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	61	260	0	ENST00000360408.1:c.349C>T	p.Arg117Cys	p.R117C	ENST00000360408	NM_003532.2	117	Cgc/Tgc																																																																														
HGF	0	MSKCC	GRCh37	7	81346610	81346610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	29	227	0	ENST00000222390.5:c.1343A>G	p.His448Arg	p.H448R	ENST00000222390	NM_000601.4	448	cAt/cGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877989	151877989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	23	127	0	ENST00000262189.6:c.6956C>T	p.Ala2319Val	p.A2319V	ENST00000262189	NM_170606.2	2319	gCc/gTc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738404	145738404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	49	360	0	ENST00000428558.2:c.2581C>T	p.Pro861Ser	p.P861S	ENST00000428558	NM_004260.3	861	Ccc/Tcc																																																																														
TEK	0	MSKCC	GRCh37	9	27180310	27180310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	53	245	1	ENST00000380036.4:c.974G>A	p.Arg325His	p.R325H	ENST00000380036	NM_000459.3	325	cGc/cAc																																																																														
TSC1	0	MSKCC	GRCh37	9	135781415	135781415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	43	228	0	ENST00000298552.3:c.1550G>A	p.Arg517Gln	p.R517Q	ENST00000298552	NM_001162426.1	517	cGg/cAg																																																																														
RXRA	0	MSKCC	GRCh37	9	137328439	137328439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	43	493	0	ENST00000481739.1:c.1368G>T	p.Glu456Asp	p.E456D	ENST00000481739	NM_002957.4	456	gaG/gaT																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223371	53223371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	57	216	0	ENST00000375401.3:c.3988G>A	p.Ala1330Thr	p.A1330T	ENST00000375401	NM_004187.3	1330	Gcc/Acc																																																																														
MTOR	0	MSKCC	GRCh37	1	11317219	11317219	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	100	433	2	ENST00000361445.4:c.275G>T	p.Ser92Ile	p.S92I	ENST00000361445	NM_004958.3	92	aGc/aTc																																																																														
IKBKE	0	MSKCC	GRCh37	1	206664161	206664161	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	122	538	0	ENST00000367120.3:c.1703A>G	p.Tyr568Cys	p.Y568C	ENST00000367120	NM_014002.3	568	tAc/tGc																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	101	662	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
PRKD1	0	MSKCC	GRCh37	14	30103727	30103727	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			280	93	419	0	ENST00000331968.5:c.1211T>G	p.Ile404Ser	p.I404S	ENST00000331968	NM_002742.2	404	aTc/aGc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245453	41245453	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	141	795	0	ENST00000357654.3:c.2095G>T	p.Glu699Ter	p.E699*	ENST00000357654	NM_007294.3	699	Gag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141502	11141502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	254	609	0	ENST00000344626.4:c.3479G>T	p.Gly1160Val	p.G1160V	ENST00000344626	NM_003072.3	1160	gGg/gTg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111648	56111648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	74	345	0	ENST00000399503.3:c.248C>T	p.Ser83Leu	p.S83L	ENST00000399503	NM_005921.1	83	tCa/tTa																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324933	31324933	+	start_lost	Translation_Start_Site	SNP	C	C	G			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	93	427	0	ENST00000412585.2:c.3G>C	p.Met1?	p.M1?	ENST00000412585	NM_005514.6	1	atG/atC																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099991	157099991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	71	346	0	ENST00000346085.5:c.928G>T	p.Gly310Cys	p.G310C	ENST00000346085	NM_020732.3	310	Ggc/Tgc																																																																														
CARD11	0	MSKCC	GRCh37	7	2946448	2946448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	120	610	0	ENST00000396946.4:c.3289G>A	p.Glu1097Lys	p.E1097K	ENST00000396946	NM_032415.4	1097	Gag/Aag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8389266	8389266	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	128	628	0	ENST00000356435.5:c.4352T>C	p.Val1451Ala	p.V1451A	ENST00000356435		1451	gTt/gCt																																																																														
RBM10	0	MSKCC	GRCh37	X	47044710	47044710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	129	715	2	ENST00000329236.7:c.1876G>T	p.Ala626Ser	p.A626S	ENST00000329236	NM_001204466.1	626	Gcc/Tcc																																																																														
MED12	0	MSKCC	GRCh37	X	70344614	70344614	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	36	656	2	ENST00000374080.3:c.1975G>T	p.Asp659Tyr	p.D659Y	ENST00000374080		659	Gat/Tat																																																																														
STAG2	0	MSKCC	GRCh37	X	123182930	123182930	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0017842-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	20	456	0	ENST00000218089.9:c.893+2T>A		p.X298_splice	ENST00000218089	NM_001042749.1	298																																																																															
BAP1	0	MSKCC	GRCh37	3	52436624	52436624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	157	359	0	ENST00000460680.1:c.2050C>T	p.Gln684Ter	p.Q684*	ENST00000460680	NM_004656.3	684	Cag/Tag																																																																														
LATS2	0	MSKCC	GRCh37	13	21549149	21549149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	63	395	0	ENST00000382592.4:c.3127C>T	p.Arg1043Ter	p.R1043*	ENST00000382592	NM_014572.2	1043	Cga/Tga																																																																														
NF2	0	MSKCC	GRCh37	22	30038275	30038275	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0017843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	122	250	0	ENST00000338641.4:c.447+1G>T		p.X149_splice	ENST00000338641	NM_000268.3	149																																																																															
LATS1	0	MSKCC	GRCh37	6	150005017	150005017	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	46	247	0	ENST00000253339.5:c.1208delG	p.Gly403GlufsTer7	p.G403Efs*7	ENST00000253339		403	gGa/ga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106723	27106723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	34	363	0	ENST00000324856.7:c.6334C>G	p.Leu2112Val	p.L2112V	ENST00000324856	NM_006015.4	2112	Ctt/Gtt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484206	8484206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	27	368	0	ENST00000356435.5:c.3326G>A	p.Arg1109His	p.R1109H	ENST00000356435		1109	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	140	359	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	90	323	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39620705	39620705	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0017846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	30	212	0	ENST00000262039.4:c.2103G>C	p.Gln701His	p.Q701H	ENST00000262039	NM_002647.2	701	caG/caC																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	317	466	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
B2M	0	MSKCC	GRCh37	15	45007747	45007747	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	83	188	0	ENST00000558401.1:c.194G>C	p.Arg65Thr	p.R65T	ENST00000558401	NM_004048.2	65	aGa/aCa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786798	3786798	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	21	238	0	ENST00000262367.5:c.4413C>G	p.Ile1471Met	p.I1471M	ENST00000262367	NM_004380.2	1471	atC/atG																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399344	139399344	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	511	412	2	ENST00000277541.6:c.4799T>A	p.Leu1600Gln	p.L1600Q	ENST00000277541	NM_017617.3	1600	cTg/cAg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55141036	55141036	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	126	331	0	ENST00000257290.5:c.1682T>A	p.Val561Asp	p.V561D	ENST00000257290	NM_006206.4	561	gTc/gAc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64136030	64136030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	112	542	0	ENST00000334205.4:c.1291C>T	p.Arg431Cys	p.R431C	ENST00000334205	NM_003942.2	431	Cgc/Tgc																																																																														
TSC1	0	MSKCC	GRCh37	9	135776988	135776988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	22	380	0	ENST00000298552.3:c.2490G>C	p.Gln830His	p.Q830H	ENST00000298552	NM_001162426.1	830	caG/caC																																																																														
ATRX	0	MSKCC	GRCh37	X	76889133	76889137	+	frameshift_variant	Frame_Shift_Del	DEL	CAAAC	CAAAC	-			P-0017852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	76	387	0	ENST00000373344.5:c.4873_4877delGTTTG	p.Val1625SerfsTer3	p.V1625Sfs*3	ENST00000373344	NM_000489.3	1625	GTTTGt/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	24	505	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	212	703	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	2994	578	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272213	15272213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	46	440	0	ENST00000263388.2:c.6226G>T	p.Gly2076Trp	p.G2076W	ENST00000263388	NM_000435.2	2076	Ggg/Tgg																																																																														
MSH2	0	MSKCC	GRCh37	2	47693869	47693869	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	108	637	0	ENST00000233146.2:c.1583A>G	p.Lys528Arg	p.K528R	ENST00000233146	NM_000251.2	528	aAg/aGg																																																																														
TP63	0	MSKCC	GRCh37	3	189612032	189612032	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	145	510	0	ENST00000264731.3:c.1784A>T	p.His595Leu	p.H595L	ENST00000264731	NM_003722.4	595	cAt/cTt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149439336	149439336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	389	573	0	ENST00000286301.3:c.2059C>A	p.Leu687Met	p.L687M	ENST00000286301	NM_005211.3	687	Ctg/Atg																																																																														
NSD1	0	MSKCC	GRCh37	5	176707624	176707624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	55	558	1	ENST00000439151.2:c.5681G>A	p.Arg1894His	p.R1894H	ENST00000439151	NM_022455.4	1894	cGt/cAt																																																																														
ROS1	0	MSKCC	GRCh37	6	117665365	117665365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	16	343	0	ENST00000368508.3:c.4382A>G	p.Asn1461Ser	p.N1461S	ENST00000368508	NM_002944.2	1461	aAc/aGc																																																																														
BTK	0	MSKCC	GRCh37	X	100629544	100629544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	177	371	0	ENST00000308731.7:c.220C>A	p.Pro74Thr	p.P74T	ENST00000308731	NM_000061.2	74	Cct/Act																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593607	+	protein_altering_variant	In_Frame_Del	DEL	AGTGGAA	AGTGGAA	G			P-0017859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	228	446	0	ENST00000288135.5:c.1667_1673delAGTGGAAinsG	p.Gln556_Lys558delinsArg	p.Q556_K558delinsR	ENST00000288135	NM_000222.2	556	cAGTGGAAg/cGg																																																																														
IDH2	0	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	29	420	0	ENST00000330062.3:c.514A>T	p.Arg172Trp	p.R172W	ENST00000330062	NM_002168.2	172	Agg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0017860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	93	632	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271257	26271257	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	21	344	0	ENST00000305910.3:c.356C>G	p.Thr119Ser	p.T119S	ENST00000305910	NM_003534.2	119	aCt/aGt																																																																														
TSC1	0	MSKCC	GRCh37	9	135796781	135796781	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	32	334	0	ENST00000298552.3:c.706G>T	p.Gly236Ter	p.G236*	ENST00000298552	NM_001162426.1	236	Gga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	421	849	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341730	8341730	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41281783		P-0017882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	144	890	0	ENST00000356435.5:c.4910C>T	p.Thr1637Met	p.T1637M	ENST00000356435		1637	aCg/aTg																																																																														
CARD11	0	MSKCC	GRCh37	7	2953041	2953041	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149857605		P-0017882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	171	817	1	ENST00000396946.4:c.2899C>T	p.Arg967Cys	p.R967C	ENST00000396946	NM_032415.4	967	Cgc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	72	477	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2494690	2494690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	174	1110	2	ENST00000355716.4:c.830C>T	p.Thr277Met	p.T277M	ENST00000355716	NM_003820.2	277	aCg/aTg																																																																														
NF1	0	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	81	376	0	ENST00000358273.4:c.1882delT	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	24	336	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
ATM	0	MSKCC	GRCh37	11	108216545	108216545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	62	602	0	ENST00000278616.4:c.8494C>T	p.Arg2832Cys	p.R2832C	ENST00000278616	NM_000051.3	2832	Cgt/Tgt																																																																														
JAK1	0	MSKCC	GRCh37	1	65330611	65330611	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	88	680	0	ENST00000342505.4:c.1035delA	p.Lys345AsnfsTer32	p.K345Nfs*32	ENST00000342505	NM_002227.2	345	aaA/aa																																																																														
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	192	1355	3	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	171	689	7	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
FANCA	0	MSKCC	GRCh37	16	89836428	89836428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	79	573	0	ENST00000389301.3:c.2321C>T	p.Pro774Leu	p.P774L	ENST00000389301	NM_000135.2	774	cCg/cTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135785964	135785964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs118203506		P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	210	646	0	ENST00000298552.3:c.1257del	p.Arg420GlyfsTer20	p.R420Gfs*20	ENST00000298552	NM_001162426.1	419	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	104	679	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
MYCL1	0	MSKCC	GRCh37	1	40363489	40363489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	119	680	1	ENST00000397332.2:c.740G>A	p.Arg247His	p.R247H	ENST00000397332	NM_001033082.2	247	cGt/cAt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	97	669	7	ENST00000380152.3:c.1813delA	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856305	111856305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	10	52	0	ENST00000341259.2:c.356G>A	p.Arg119His	p.R119H	ENST00000341259	NM_005475.2	119	cGc/cAc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061304	38061304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	37	940	0	ENST00000250448.2:c.685G>A	p.Val229Ile	p.V229I	ENST00000250448	NM_004496.3	229	Gtc/Atc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	163	1026	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RXRA	0	MSKCC	GRCh37	9	137325969	137325969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	161	993	3	ENST00000481739.1:c.1157C>T	p.Pro386Leu	p.P386L	ENST00000481739	NM_002957.4	386	cCg/cTg																																																																														
MLH1	0	MSKCC	GRCh37	3	37091976	37091976	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	188	530	0	ENST00000231790.2:c.2104-1G>C		p.X702_splice	ENST00000231790	NM_000249.3	702																																																																															
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	181	890	2	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	160	897	11	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430835	78430835	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	155	917	0	ENST00000370768.2:c.554delA	p.Asn185MetfsTer7	p.N185Mfs*7	ENST00000370768	NM_003902.3	185	aAt/at																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165516	118165516	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	76	275	0	ENST00000369448.3:c.28delG	p.Asp10IlefsTer37	p.D10Ifs*37	ENST00000369448	NM_017709.3	9	aGg/ag																																																																														
SMYD3	0	MSKCC	GRCh37	1	246078896	246078896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	174	846	1	ENST00000388985.4:c.749G>A	p.Arg250Gln	p.R250Q	ENST00000388985		250	cGg/cAg																																																																														
RET	0	MSKCC	GRCh37	10	43608376	43608376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	263	1288	2	ENST00000355710.3:c.1724C>T	p.Thr575Ile	p.T575I	ENST00000355710	NM_020975.4	575	aCc/aTc																																																																														
TET1	0	MSKCC	GRCh37	10	70446149	70446149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	107	660	1	ENST00000373644.4:c.5089G>A	p.Gly1697Ser	p.G1697S	ENST00000373644	NM_030625.2	1697	Ggt/Agt																																																																														
MYOD1	0	MSKCC	GRCh37	11	17743024	17743024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	155	891	6	ENST00000250003.3:c.932C>T	p.Ala311Val	p.A311V	ENST00000250003	NM_002478.4	311	gCg/gTg																																																																														
CCND1	0	MSKCC	GRCh37	11	69466022	69466024	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	183	917	0	ENST00000227507.2:c.862_864delACC	p.Thr288del	p.T288del	ENST00000227507	NM_053056.2	287	cCCAcc/ccc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438018	49438018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	206	903	1	ENST00000301067.7:c.5153C>T	p.Ala1718Val	p.A1718V	ENST00000301067	NM_003482.3	1718	gCg/gTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992478	72992478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	268	1093	0	ENST00000268489.5:c.1567C>A	p.Leu523Ile	p.L523I	ENST00000268489	NM_006885.3	523	Ctt/Att																																																																														
NCOR1	0	MSKCC	GRCh37	17	16042481	16042481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	89	788	0	ENST00000268712.3:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000268712	NM_006311.3	398	cGg/cAg																																																																														
RAD51D	0	MSKCC	GRCh37	17	33428327	33428327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	161	733	2	ENST00000335858.7:c.460C>T	p.Arg154Cys	p.R154C	ENST00000335858	NM_133629.2	154	Cgc/Tgc																																																																														
RARA	0	MSKCC	GRCh37	17	38487540	38487540	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	167	789	2	ENST00000254066.5:c.70T>C	p.Tyr24His	p.Y24H	ENST00000254066	NM_000964.3	24	Tac/Cac																																																																														
RAD51C	0	MSKCC	GRCh37	17	56809850	56809850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	104	798	1	ENST00000337432.4:c.971C>T	p.Ala324Val	p.A324V	ENST00000337432	NM_058216.2	324	gCa/gTa																																																																														
CD79B	0	MSKCC	GRCh37	17	62007182	62007182	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147194821		P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	160	829	2	ENST00000392795.3:c.500C>T	p.Thr167Met	p.T167M	ENST00000392795	NM_001039933.1	167	aCg/aTg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78727832	78727832	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	225	1122	0	ENST00000306801.3:c.677A>G	p.His226Arg	p.H226R	ENST00000306801	NM_020761.2	226	cAc/cGc																																																																														
BCL2	0	MSKCC	GRCh37	18	60985448	60985450	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	200	1154	0	ENST00000333681.4:c.450_452delCTT	p.Phe151del	p.F151del	ENST00000333681		150	ttCTTt/ttt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600408	10600408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	272	1122	2	ENST00000171111.5:c.1447C>T	p.Arg483Cys	p.R483C	ENST00000171111	NM_203500.1	483	Cgc/Tgc																																																																														
CIC	0	MSKCC	GRCh37	19	42791008	42791009	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	132	727	0	ENST00000575354.2:c.153_154insA	p.Ser52IlefsTer25	p.S52Ifs*25	ENST00000575354	NM_015125.3	51	-/A																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25471037	25471039	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	211	901	0	ENST00000264709.3:c.722_724delAGG	p.Glu241del	p.E241del	ENST00000264709	NM_175629.2	241	gAGGcc/gcc																																																																														
IRS1	0	MSKCC	GRCh37	2	227661186	227661186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	119	808	0	ENST00000305123.5:c.2269delC	p.Gln757SerfsTer186	p.Q757Sfs*186	ENST00000305123	NM_005544.2	757	Cag/ag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52651473	52651474	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	119	922	1	ENST00000394830.3:c.1622_1623delGA	p.Arg541ThrfsTer3	p.R541Tfs*3	ENST00000394830	NM_018313.4	541	aGA/a																																																																														
ATR	0	MSKCC	GRCh37	3	142184046	142184048	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	76	652	0	ENST00000350721.4:c.6932_6934delAGA	p.Lys2311del	p.K2311del	ENST00000350721	NM_001184.3	2311	aAGAtt/att																																																																														
FAT1	0	MSKCC	GRCh37	4	187524581	187524581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	138	844	0	ENST00000441802.2:c.11099A>G	p.Lys3700Arg	p.K3700R	ENST00000441802	NM_005245.3	3700	aAa/aGa																																																																														
FAT1	0	MSKCC	GRCh37	4	187557891	187557891	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200242253		P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	150	494	1	ENST00000441802.2:c.3820G>A	p.Val1274Ile	p.V1274I	ENST00000441802	NM_005245.3	1274	Gtc/Atc																																																																														
TERT	0	MSKCC	GRCh37	5	1294255	1294255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	130	709	1	ENST00000310581.5:c.746C>T	p.Thr249Met	p.T249M	ENST00000310581	NM_198253.2	249	aCg/aTg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591079	67591102	+	inframe_deletion	In_Frame_Del	DEL	GAAATTGACAAACGTATGAACAGC	GAAATTGACAAACGTATGAACAGC	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	68	584	0	ENST00000274335.5:c.1672_1695delGAAATTGACAAACGTATGAACAGC	p.Glu558_Ser565del	p.E558_S565del	ENST00000274335		558	GAAATTGACAAACGTATGAACAGC/-																																																																														
RASA1	0	MSKCC	GRCh37	5	86627205	86627205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	65	344	1	ENST00000274376.6:c.580C>T	p.Arg194Cys	p.R194C	ENST00000274376	NM_002890.2	194	Cgc/Tgc																																																																														
APC	0	MSKCC	GRCh37	5	112178066	112178066	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	147	736	0	ENST00000257430.4:c.6778delA	p.Ser2260AlafsTer19	p.S2260Afs*19	ENST00000257430	NM_000038.5	2259	Aaa/aa																																																																														
CSF1R	0	MSKCC	GRCh37	5	149435874	149435874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	205	859	2	ENST00000286301.3:c.2350G>A	p.Val784Met	p.V784M	ENST00000286301	NM_005211.3	784	Gtg/Atg																																																																														
FLT4	0	MSKCC	GRCh37	5	180048196	180048196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	235	1090	4	ENST00000261937.6:c.2077G>A	p.Asp693Asn	p.D693N	ENST00000261937	NM_182925.4	693	Gac/Aac																																																																														
FLT4	0	MSKCC	GRCh37	5	180056426	180056426	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	65	519	1	ENST00000261937.6:c.818C>T	p.Ala273Val	p.A273V	ENST00000261937	NM_182925.4	273	gCa/gTa																																																																														
E2F3	0	MSKCC	GRCh37	6	20402512	20402512	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	142	840	0	ENST00000346618.3:c.53delG	p.Gly18ValfsTer22	p.G18Vfs*22	ENST00000346618	NM_001949.4	17	Ggg/gg																																																																														
JAK2	0	MSKCC	GRCh37	9	5080657	5080657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	84	707	1	ENST00000381652.3:c.2408G>A	p.Arg803Gln	p.R803Q	ENST00000381652	NM_004972.3	803	cGa/cAa																																																																														
PTCH1	0	MSKCC	GRCh37	9	98238333	98238333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	28	460	0	ENST00000331920.6:c.1711C>T	p.Arg571Trp	p.R571W	ENST00000331920	NM_000264.3	571	Cgg/Tgg																																																																														
ABL1	0	MSKCC	GRCh37	9	133753870	133753870	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	131	867	1	ENST00000318560.5:c.1339C>T	p.Gln447Ter	p.Q447*	ENST00000318560	NM_005157.4	447	Cag/Tag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139417373	139417373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	145	837	1	ENST00000277541.6:c.671C>A	p.Pro224His	p.P224H	ENST00000277541	NM_017617.3	224	cCc/cAc																																																																														
TRAF2	0	MSKCC	GRCh37	9	139793208	139793208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	228	870	2	ENST00000247668.2:c.16G>A	p.Val6Met	p.V6M	ENST00000247668	NM_021138.3	6	Gtg/Atg																																																																														
RBM10	0	MSKCC	GRCh37	X	47030582	47030582	+	intron_variant	Intron	SNP	G	G	T			P-0017883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	180	943	5	ENST00000329236.7:c.201+1685G>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0017886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	388	1063	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223979	36223979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	216	1115	0	ENST00000222270.7:c.6529C>T	p.Leu2177Phe	p.L2177F	ENST00000222270	NM_014727.1	2177	Ctt/Ttt																																																																														
MSH6	0	MSKCC	GRCh37	2	48028031	48028031	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	147	464	0	ENST00000234420.5:c.2913delG	p.Ile972LeufsTer25	p.I972Lfs*25	ENST00000234420	NM_000179.2	970	tGg/tg																																																																														
BARD1	0	MSKCC	GRCh37	2	215674235	215674235	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	223	716	0	ENST00000260947.4:c.59C>G	p.Pro20Arg	p.P20R	ENST00000260947	NM_000465.2	20	cCt/cGt																																																																														
ROS1	0	MSKCC	GRCh37	6	117647510	117647510	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	115	834	0	ENST00000368508.3:c.5434A>T	p.Ser1812Cys	p.S1812C	ENST00000368508	NM_002944.2	1812	Agt/Tgt																																																																														
TRAF2	0	MSKCC	GRCh37	9	139793310	139793310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	254	839	1	ENST00000247668.2:c.118G>A	p.Val40Ile	p.V40I	ENST00000247668	NM_021138.3	40	Gtc/Atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	142	856	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	235	1104	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
ATR	0	MSKCC	GRCh37	3	142284988	142284988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	54	793	0	ENST00000350721.4:c.267C>A	p.Ser89Arg	p.S89R	ENST00000350721	NM_001184.3	89	agC/agA																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	69	659	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	8	925	1	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																														
KMT2A	0	MSKCC	GRCh37	11	118391545	118391545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	13	562	0	ENST00000534358.1:c.11458C>T	p.Pro3820Ser	p.P3820S	ENST00000534358	NM_005933.3	3820	Ccc/Tcc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71090671	71090671	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	40	268	0	ENST00000318789.4:c.677delC	p.Thr226LysfsTer10	p.T226Kfs*10	ENST00000318789	NM_032682.5	226	aCa/aa																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	95	669	1	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	63	415	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7578278	7578286	+	inframe_deletion	In_Frame_Del	DEL	GAGGGGCCA	GAGGGGCCA	-			P-0017890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	87	737	0	ENST00000269305.4:c.563_571delTGGCCCCTC	p.Leu188_Pro190del	p.L188_P190del	ENST00000269305	NM_001126112.2	188	cTGGCCCCTCct/cct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	82	797	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	151	629	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
PTEN	0	MSKCC	GRCh37	10	89711887	89711887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	99	544	2	ENST00000371953.3:c.507delC	p.Ser170ValfsTer13	p.S170Vfs*13	ENST00000371953	NM_000314.4	169	Ccc/cc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	116	788	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
ATM	0	MSKCC	GRCh37	11	108159786	108159786	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	76	408	0	ENST00000278616.4:c.4192A>T	p.Lys1398Ter	p.K1398*	ENST00000278616	NM_000051.3	1398	Aaa/Taa																																																																														
LATS2	0	MSKCC	GRCh37	13	21555721	21555721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	169	926	0	ENST00000382592.4:c.2549G>T	p.Cys850Phe	p.C850F	ENST00000382592	NM_014572.2	850	tGt/tTt																																																																														
NF1	0	MSKCC	GRCh37	17	29585404	29585404	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	551	825	0	ENST00000358273.4:c.4216G>T	p.Gly1406Ter	p.G1406*	ENST00000358273	NM_001042492.2	1406	Gga/Tga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031919	10031919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	255	756	2	ENST00000330684.3:c.904G>A	p.Ala302Thr	p.A302T	ENST00000330684	NM_001134407.1	302	Gct/Act																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	162	615	1	ENST00000335508.6:c.1873C>A	p.Arg625Ser	p.R625S	ENST00000335508	NM_012433.2	625	Cgt/Agt																																																																														
INSR	0	MSKCC	GRCh37	19	7172373	7172373	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	298	755	0	ENST00000302850.5:c.1196G>C	p.Arg399Pro	p.R399P	ENST00000302850	NM_000208.2	399	cGa/cCa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1956924	1956924	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	403	903	0	ENST00000382891.5:c.2375A>G	p.Tyr792Cys	p.Y792C	ENST00000382891	NM_133335.3	792	tAt/tGt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115718	8115719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATA			P-0017898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	157	736	0	ENST00000346208.3:c.1064_1065insCATA	p.Met356IlefsTer16	p.M356Ifs*16	ENST00000346208		355	act/acCATAt																																																																														
CTCF	0	MSKCC	GRCh37	16	67644856	67644856	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	154	665	0	ENST00000264010.4:c.124delC	p.Gln42ArgfsTer20	p.Q42Rfs*20	ENST00000264010	NM_006565.3	41	Ccc/cc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89345543	89345543	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	25	223	0	ENST00000301030.4:c.7407C>A	p.Tyr2469Ter	p.Y2469*	ENST00000301030	NM_001256183.1	2469	taC/taA																																																																														
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	26	475	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	229	1179	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
CSDE1	0	MSKCC	GRCh37	1	115263191	115263191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	48	761	2	ENST00000438362.2:c.2159G>A	p.Arg720His	p.R720H	ENST00000438362	NM_001242891.1	720	cGc/cAc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67477131	67477131	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	158	745	0	ENST00000327367.4:c.938T>A	p.Ile313Asn	p.I313N	ENST00000327367	NM_005902.3	313	aTt/aAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	129	890	1	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509630	106509630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	116	859	2	ENST00000359195.3:c.1624C>T	p.Arg542Trp	p.R542W	ENST00000359195	NM_002649.2	542	Cgg/Tgg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937219	36937219	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140159756		P-0017902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	97	894	0	ENST00000361632.4:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000361632		367	cGg/cAg																																																																														
UPF1	0	MSKCC	GRCh37	19	18976209	18976209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	66	1054	1	ENST00000262803.5:c.2969C>A	p.Pro990Gln	p.P990Q	ENST00000262803	NM_002911.3	990	cCa/cAa																																																																														
PREX2	0	MSKCC	GRCh37	8	69129897	69129897	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	37	457	0	ENST00000288368.4:c.4651A>T	p.Ser1551Cys	p.S1551C	ENST00000288368	NM_024870.2	1551	Agc/Tgc																																																																														
ARAF	0	MSKCC	GRCh37	X	47430798	47430798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	81	1180	1	ENST00000377045.4:c.1763G>A	p.Arg588His	p.R588H	ENST00000377045	NM_001654.4	588	cGc/cAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55242480	55242504	+	protein_altering_variant	In_Frame_Del	DEL	AACATCTCCGAAAGCCAACAAGGAA	AACATCTCCGAAAGCCAACAAGGAA	G			P-0017904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	933	120	0	ENST00000275493.2:c.2250_2274delinsG	p.Thr751_Glu758del	p.T751_E758del	ENST00000275493	NM_005228.3	750	gcAACATCTCCGAAAGCCAACAAGGAA/gcG																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	141	435	0				ENST00000310581	NM_198253.2																																																																																
AXIN1	0	MSKCC	GRCh37	16	348252	348252	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	340	767	1	ENST00000262320.3:c.1255-1G>A		p.X419_splice	ENST00000262320	NM_003502.3	419																																																																															
TP53	0	MSKCC	GRCh37	17	7577498	7577499	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CC	CC	-			P-0017908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	241	473	0	ENST00000269305.4:c.782_782+1delGG		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
PAK7	0	MSKCC	GRCh37	20	9546841	9546841	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	122	259	0	ENST00000353224.5:c.1181A>G	p.Tyr394Cys	p.Y394C	ENST00000353224	NM_177990.2	394	tAc/tGc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0017909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	21	468	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	28	790	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	107	550	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	156	685	0	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag																																																																														
PARP1	0	MSKCC	GRCh37	1	226578210	226578210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	36	541	0	ENST00000366794.5:c.518G>T	p.Arg173Leu	p.R173L	ENST00000366794	NM_001618.3	173	cGg/cTg																																																																														
TET1	0	MSKCC	GRCh37	10	70332713	70332713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	58	568	0	ENST00000373644.4:c.618C>A	p.His206Gln	p.H206Q	ENST00000373644	NM_030625.2	206	caC/caA																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741445	17741445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	59	895	0	ENST00000250003.3:c.116A>T	p.Asp39Val	p.D39V	ENST00000250003	NM_002478.4	39	gAc/gTc																																																																														
ATM	0	MSKCC	GRCh37	11	108192148	108192148	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	111	403	0	ENST00000278616.4:c.6572+1G>A		p.X2191_splice	ENST00000278616	NM_000051.3	2191																																																																															
KMT2D	0	MSKCC	GRCh37	12	49421023	49421023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	56	339	0	ENST00000301067.7:c.14726C>T	p.Pro4909Leu	p.P4909L	ENST00000301067	NM_003482.3	4909	cCa/cTa																																																																														
POLE	0	MSKCC	GRCh37	12	133244183	133244183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	65	547	1	ENST00000320574.5:c.2225G>T	p.Arg742Leu	p.R742L	ENST00000320574	NM_006231.2	742	cGt/cTt																																																																														
TSHR	0	MSKCC	GRCh37	14	81422027	81422027	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	40	272	0	ENST00000298171.2:c.3G>A	p.Met1?	p.M1?	ENST00000298171	NM_000369.2	1	atG/atA																																																																														
PMS1	0	MSKCC	GRCh37	2	190719758	190719758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	37	389	0	ENST00000441310.2:c.1760C>G	p.Pro587Arg	p.P587R	ENST00000441310	NM_000534.4	587	cCt/cGt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198274548	198274548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	52	466	0	ENST00000335508.6:c.850G>C	p.Ala284Pro	p.A284P	ENST00000335508	NM_012433.2	284	Gca/Cca																																																																														
DROSHA	0	MSKCC	GRCh37	5	31504701	31504701	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	102	688	0	ENST00000344624.3:c.1629A>T	p.Arg543Ser	p.R543S	ENST00000344624		543	agA/agT																																																																														
NTRK2	0	MSKCC	GRCh37	9	87482254	87482254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	64	658	0	ENST00000277120.3:c.1541C>A	p.Pro514Gln	p.P514Q	ENST00000277120		514	cCa/cAa																																																																														
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	108	627	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
BAP1	0	MSKCC	GRCh37	3	52441231	52441231	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	102	377	0	ENST00000460680.1:c.539T>A	p.Leu180His	p.L180H	ENST00000460680	NM_004656.3	180	cTc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	30	902	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0017912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	38	537	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	480	731	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1249	501	834	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40979283	40979283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	315	452	0	ENST00000373198.4:c.1850G>T	p.Arg617Leu	p.R617L	ENST00000373198	NM_133170.3	617	cGg/cTg																																																																														
JAK1	0	MSKCC	GRCh37	1	65349093	65349093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	383	541	0	ENST00000342505.4:c.72delG	p.Thr25LeufsTer3	p.T25Lfs*3	ENST00000342505	NM_002227.2	24	aaG/aa																																																																														
EED	0	MSKCC	GRCh37	11	85989443	85989443	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	180	355	0	ENST00000263360.6:c.1202G>A	p.Cys401Tyr	p.C401Y	ENST00000263360	NM_003797.3	401	tGt/tAt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913140	32913140	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	31	644	0	ENST00000380152.3:c.4648G>C	p.Glu1550Gln	p.E1550Q	ENST00000380152		1550	Gag/Cag																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4110515	4110515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	316	456	0	ENST00000262948.5:c.442G>A	p.Glu148Lys	p.E148K	ENST00000262948	NM_030662.3	148	Gaa/Aaa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5210481	5210481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	297	453	0	ENST00000357368.4:c.5486G>T	p.Arg1829Leu	p.R1829L	ENST00000357368	NM_002850.3	1829	cGg/cTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9523282	9523282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	383	590	0	ENST00000353224.5:c.1955T>A	p.Met652Lys	p.M652K	ENST00000353224	NM_177990.2	652	aTg/aAg																																																																														
MYD88	0	MSKCC	GRCh37	3	38182256	38182256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	291	456	0	ENST00000396334.3:c.692G>T	p.Arg231Leu	p.R231L	ENST00000396334	NM_002468.4	231	cGg/cTg																																																																														
MITF	0	MSKCC	GRCh37	3	69928380	69928380	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	258	354	0	ENST00000352241.4:c.200A>C	p.Gln67Pro	p.Q67P	ENST00000352241	NM_198159.2	67	cAg/cCg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390206	89390206	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	160	348	0	ENST00000336596.2:c.955T>A	p.Ser319Thr	p.S319T	ENST00000336596	NM_005233.5	319	Tcc/Acc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38952316	38952316	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	119	212	0	ENST00000357387.3:c.3109A>T	p.Ser1037Cys	p.S1037C	ENST00000357387	NM_152756.3	1037	Agt/Tgt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178535	56178535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	146	273	0	ENST00000399503.3:c.3508G>C	p.Asp1170His	p.D1170H	ENST00000399503	NM_005921.1	1170	Gat/Cat																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149515421	149515421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	331	478	0	ENST00000261799.4:c.61C>T	p.Leu21Phe	p.L21F	ENST00000261799	NM_002609.3	21	Ctc/Ttc																																																																														
NSD1	0	MSKCC	GRCh37	5	176678794	176678794	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	570	440	0	ENST00000439151.2:c.4705G>T	p.Glu1569Ter	p.E1569*	ENST00000439151	NM_022455.4	1569	Gag/Tag																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271411	26271411	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	303	426	0	ENST00000305910.3:c.202T>C	p.Phe68Leu	p.F68L	ENST00000305910	NM_003534.2	68	Ttc/Ctc																																																																														
TAP1	0	MSKCC	GRCh37	6	32813545	32813545	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	227	290	0	ENST00000354258.4:c.2238C>G	p.Tyr746Ter	p.Y746*	ENST00000354258	NM_000593.5	746	taC/taG																																																																														
IKZF1	0	MSKCC	GRCh37	7	50455145	50455145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	168	328	0	ENST00000331340.3:c.692G>T	p.Gly231Val	p.G231V	ENST00000331340	NM_006060.4	231	gGc/gTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402552	139402552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	417	626	0	ENST00000277541.6:c.3365G>A	p.Cys1122Tyr	p.C1122Y	ENST00000277541	NM_017617.3	1122	tGt/tAt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53244007	53244007	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	445	322	0	ENST00000375401.3:c.986T>A	p.Met329Lys	p.M329K	ENST00000375401	NM_004187.3	329	aTg/aAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	157	421	0				ENST00000310581	NM_198253.2																																																																																
MDM2	0	MSKCC	GRCh37	12	69202994	69202994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	126	479	0	ENST00000462284.1:c.21G>C	p.Met7Ile	p.M7I	ENST00000462284	NM_002392.5	7	atG/atC																																																																														
RB1	0	MSKCC	GRCh37	13	48954339	48954339	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0017914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	125	461	0	ENST00000267163.4:c.1460T>A	p.Leu487Ter	p.L487*	ENST00000267163	NM_000321.2	487	tTg/tAg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88423653	88423653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	22	320	0	ENST00000360948.2:c.2182G>A	p.Gly728Arg	p.G728R	ENST00000360948	NM_001012338.2	728	Gga/Aga																																																																														
STK11	0	MSKCC	GRCh37	19	1221269	1221330	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGAACATCGGGAAGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCCGCTCTCTGACC	TGAGAACATCGGGAAGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCCGCTCTCTGACC	-			P-0017914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	27	745	0	ENST00000326873.7:c.794_855delAGAACATCGGGAAGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCCGCTCTCTGACCTG	p.Glu265AlafsTer6	p.E265Afs*6	ENST00000326873	NM_000455.4	264	ttTGAGAACATCGGGAAGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCCGCTCTCTGACCtg/tttg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211336	36211356	+	inframe_deletion	In_Frame_Del	DEL	GACGAGGAAGAAGAGAAGAAA	GACGAGGAAGAAGAGAAGAAA	-			P-0017914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	248	922	0	ENST00000222270.7:c.1089_1109delCGAGGAAGAAGAGAAGAAAGA	p.Asp363_Lys369del	p.D363_K369del	ENST00000222270	NM_014727.1	363	GACGAGGAAGAAGAGAAGAAA/-																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	281	623	0	ENST00000391945.4:c.713A>T	p.Asn238Ile	p.N238I	ENST00000391945	NM_000400.3	238	aAc/aTc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965499	25965499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	206	718	1	ENST00000435504.4:c.3707C>T	p.Pro1236Leu	p.P1236L	ENST00000435504		1236	cCa/cTa																																																																														
CUL3	0	MSKCC	GRCh37	2	225342822	225342959	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTGTAAAATTGTTTTTAAAATTAGTTGAATACAATAATTTTGTTAATAATGTTACTGTTTTTTCTATATTAGCCCAGTAGTGAAGAGTCCTCACCTCCGCTACTAGAACATTGTGCTGCATCTTCTTTCTAGATTTC	ATTGTAAAATTGTTTTTAAAATTAGTTGAATACAATAATTTTGTTAATAATGTTACTGTTTTTTCTATATTAGCCCAGTAGTGAAGAGTCCTCACCTCCGCTACTAGAACATTGTGCTGCATCTTCTTTCTAGATTTC	-			P-0017914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	12	76	0	ENST00000264414.4:c.2133_2175+95delGAAATCTAGAAAGAAGATGCAGCACAATGTTCTAGTAGCGGAGGTGAGGACTCTTCACTACTGGGCTAATATAGAAAAAACAGTAACATTATTAACAAAATTATTGTATTCAACTAATTTTAAAAACAATTTTACAAT		p.X711_splice	ENST00000264414	NM_003590.4	711																																																																															
CUL3	0	MSKCC	GRCh37	2	225371641	225371641	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	148	831	0	ENST00000264414.4:c.963G>C	p.Leu321Phe	p.L321F	ENST00000264414	NM_003590.4	321	ttG/ttC																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55155051	55155051	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	122	448	0	ENST00000257290.5:c.2760C>G	p.His920Gln	p.H920Q	ENST00000257290	NM_006206.4	920	caC/caG																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106522602	106522610	+	frameshift_variant	Frame_Shift_Del	DEL	TGGATCTAT	TGGATCTAT	GG			P-0017914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	28	524	1	ENST00000359195.3:c.2579_2587delTGGATCTATinsGG	p.Leu860TrpfsTer15	p.L860Wfs*15	ENST00000359195	NM_002649.2	860	tTGGATCTATgc/tGGgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	134	714	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916614	178916614	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	57	510	0	ENST00000263967.3:c.1A>G	p.Met1?	p.M1?	ENST00000263967	NM_006218.2	1	Atg/Gtg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350084	89350084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	58	694	0	ENST00000301030.4:c.2866G>C	p.Glu956Gln	p.E956Q	ENST00000301030	NM_001256183.1	956	Gag/Cag																																																																														
FGF19	0	MSKCC	GRCh37	11	69518580	69518580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	55	653	0	ENST00000294312.3:c.65G>T	p.Gly22Val	p.G22V	ENST00000294312	NM_005117.2	22	gGg/gTg																																																																														
DIS3	0	MSKCC	GRCh37	13	73349473	73349473	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	153	658	0	ENST00000377767.4:c.863A>C	p.His288Pro	p.H288P	ENST00000377767	NM_014953.3	288	cAc/cCc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348971	89348971	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	67	628	0	ENST00000301030.4:c.3979G>T	p.Glu1327Ter	p.E1327*	ENST00000301030	NM_001256183.1	1327	Gag/Tag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226598	2226598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	47	779	0	ENST00000398665.3:c.4078G>A	p.Glu1360Lys	p.E1360K	ENST00000398665	NM_032482.2	1360	Gag/Aag																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794788	242794788	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	47	285	0	ENST00000334409.5:c.421G>T	p.Glu141Ter	p.E141*	ENST00000334409	NM_005018.2	141	Gag/Tag																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121067	29121067	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	202	844	0	ENST00000328354.6:c.490A>T	p.Ser164Cys	p.S164C	ENST00000328354	NM_007194.3	164	Agt/Tgt																																																																														
FAT1	0	MSKCC	GRCh37	4	187540896	187540896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	43	438	0	ENST00000441802.2:c.6844G>T	p.Val2282Leu	p.V2282L	ENST00000441802	NM_005245.3	2282	Gtg/Ttg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520476	176520476	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	188	827	0	ENST00000292408.4:c.1321A>T	p.Ser441Cys	p.S441C	ENST00000292408	NM_213647.1	441	Agc/Tgc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157256615	157256615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	74	549	0	ENST00000346085.5:c.1942G>T	p.Gly648Cys	p.G648C	ENST00000346085	NM_020732.3	648	Ggc/Tgc																																																																														
SMO	0	MSKCC	GRCh37	7	128848687	128848687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	139	537	1	ENST00000249373.3:c.1352G>T	p.Arg451Leu	p.R451L	ENST00000249373	NM_005631.4	451	cGc/cTc																																																																														
RBM10	0	MSKCC	GRCh37	X	47044905	47044907	+	frameshift_variant	Frame_Shift_Del	DEL	GTG	GTG	TT			P-0017915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	128	841	2	ENST00000329236.7:c.1997_1999delGTGinsTT	p.Arg666LeufsTer58	p.R666Lfs*58	ENST00000329236	NM_001204466.1	666	cGTGgg/cTTgg																																																																														
FOXO1	0	MSKCC	GRCh37	13	41240213	41240213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	10	155	1	ENST00000379561.5:c.137G>A	p.Gly46Asp	p.G46D	ENST00000379561	NM_002015.3	46	gGc/gAc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251857	212251857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	114	289	0	ENST00000342788.4:c.3202G>T	p.Asp1068Tyr	p.D1068Y	ENST00000342788	NM_005235.2	1068	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0017919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	451	746	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0017919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	138	275	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	230	633	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PGR	0	MSKCC	GRCh37	11	100933232	100933232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	79	567	0	ENST00000325455.5:c.2158C>A	p.Gln720Lys	p.Q720K	ENST00000325455	NM_001202474.3	720	Caa/Aaa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31017816	31017816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	79	637	0	ENST00000375687.4:c.678C>A	p.Asp226Glu	p.D226E	ENST00000375687	NM_015338.5	226	gaC/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0017923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	408	676	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149433917	149433917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	132	717	0	ENST00000286301.3:c.2731C>T	p.Gln911Ter	p.Q911*	ENST00000286301	NM_005211.3	911	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7579579	7579580	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCAAGGG			P-0017923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	176	606	0	ENST00000269305.4:c.100_107dup	p.Ser37ProfsTer10	p.S37Pfs*10	ENST00000269305	NM_001126112.2	36	ccg/ccCCCTTGCCg																																																																														
BCOR	0	MSKCC	GRCh37	X	39922145	39922145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	149	311	0	ENST00000378444.4:c.4027G>C	p.Ala1343Pro	p.A1343P	ENST00000378444	NM_001123385.1	1343	Gct/Cct																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144111	11144111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	167	873	0	ENST00000344626.4:c.3692C>A	p.Ala1231Asp	p.A1231D	ENST00000344626	NM_003072.3	1231	gCc/gAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	76	500	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	130	535	4	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	15	155	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
BRCA2	0	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	53	537	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5210778	5210778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	73	570	2	ENST00000357368.4:c.5273C>T	p.Ala1758Val	p.A1758V	ENST00000357368	NM_002850.3	1758	gCg/gTg																																																																														
INSR	3643	MSKCC	GRCh37	19	7172331	7172331	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758151117		P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	88	749	0	ENST00000302850.5:c.1238G>A	p.Arg413His	p.R413H	ENST00000302850	NM_000208.2	413	cGt/cAt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	60	900	9	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																														
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	68	508	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46715685	46715685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	67	714	0	ENST00000371975.4:c.104G>A	p.Arg35Gln	p.R35Q	ENST00000371975	NM_003579.3	35	cGg/cAg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458467	120458467	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	69	552	1	ENST00000256646.2:c.6878A>G	p.His2293Arg	p.H2293R	ENST00000256646	NM_024408.3	2293	cAc/cGc																																																																														
ROS1	0	MSKCC	GRCh37	6	117658497	117658497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	56	675	0	ENST00000368508.3:c.5086T>C	p.Tyr1696His	p.Y1696H	ENST00000368508	NM_002944.2	1696	Tac/Cac																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467829	50467829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	45	390	0	ENST00000331340.3:c.1064C>T	p.Ala355Val	p.A355V	ENST00000331340	NM_006060.4	355	gCg/gTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499706	8499706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	71	662	1	ENST00000356435.5:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000356435		755	Gaa/Aaa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	199	832	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
TET2	54790	MSKCC	GRCh37	4	106193850	106193850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	51	339	0	ENST00000380013.4:c.4317del	p.Lys1439AsnfsTer9	p.K1439Nfs*9	ENST00000380013	NM_001127208.2	1438	Aaa/aa																																																																														
NTHL1	4913	MSKCC	GRCh37	16	2096132	2096133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs763525759		P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	80	675	2	ENST00000219066.1:c.374dup	p.Val127GlyfsTer43	p.V127Gfs*43	ENST00000219066	NM_002528.5	125	cca/ccCa																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347093	347093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1260	67	1036	0	ENST00000262320.3:c.1918del	p.Glu640LysfsTer65	p.E640Kfs*65	ENST00000262320	NM_003502.3	640	Gaa/aa																																																																														
MTOR	0	MSKCC	GRCh37	1	11174495	11174495	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	83	689	0	ENST00000361445.4:c.7180G>T	p.Gly2394Cys	p.G2394C	ENST00000361445	NM_004958.3	2394	Ggc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101168	27101168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	76	837	0	ENST00000324856.7:c.4450C>T	p.Pro1484Ser	p.P1484S	ENST00000324856	NM_006015.4	1484	Ccc/Tcc																																																																														
SESN2	0	MSKCC	GRCh37	1	28599251	28599251	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	122	886	0	ENST00000253063.3:c.701delC	p.Pro234LeufsTer13	p.P234Lfs*13	ENST00000253063	NM_031459.4	233	Ccc/cc																																																																														
CSDE1	0	MSKCC	GRCh37	1	115263195	115263195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	72	673	1	ENST00000438362.2:c.2155C>A	p.Leu719Met	p.L719M	ENST00000438362	NM_001242891.1	719	Ctg/Atg																																																																														
WT1	0	MSKCC	GRCh37	11	32456597	32456597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	22	142	0	ENST00000332351.3:c.295G>A	p.Ala99Thr	p.A99T	ENST00000332351	NM_024426.4	99	Gcg/Acg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94212838	94212838	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	58	530	0	ENST00000323929.3:c.402+2T>C		p.X134_splice	ENST00000323929	NM_005591.3	134																																																																															
PGR	0	MSKCC	GRCh37	11	100998621	100998621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	82	660	1	ENST00000325455.5:c.1181C>T	p.Ala394Val	p.A394V	ENST00000325455	NM_001202474.3	394	gCg/gTg																																																																														
ATM	0	MSKCC	GRCh37	11	108122569	108122569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	48	483	0	ENST00000278616.4:c.1613C>T	p.Ala538Val	p.A538V	ENST00000278616	NM_000051.3	538	gCa/gTa																																																																														
CHEK1	0	MSKCC	GRCh37	11	125505404	125505404	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	59	614	0	ENST00000428830.2:c.700delA	p.Ile234SerfsTer6	p.I234Sfs*6	ENST00000428830	NM_001114121.2	232	Aaa/aa																																																																														
CCND2	0	MSKCC	GRCh37	12	4387950	4387950	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	58	561	0	ENST00000261254.3:c.436A>G	p.Lys146Glu	p.K146E	ENST00000261254	NM_001759.3	146	Aag/Gag																																																																														
ARID2	0	MSKCC	GRCh37	12	46245519	46245519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	49	429	0	ENST00000334344.6:c.3613G>A	p.Gly1205Arg	p.G1205R	ENST00000334344	NM_152641.2	1205	Gga/Aga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426046	49426046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	84	756	0	ENST00000301067.7:c.12442A>G	p.Met4148Val	p.M4148V	ENST00000301067	NM_003482.3	4148	Atg/Gtg																																																																														
CDK4	0	MSKCC	GRCh37	12	58144530	58144530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	60	392	0	ENST00000257904.6:c.541C>T	p.Arg181Ter	p.R181*	ENST00000257904	NM_000075.3	181	Cga/Tga																																																																														
POLE	0	MSKCC	GRCh37	12	133245435	133245435	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	84	630	1	ENST00000320574.5:c.1885delG	p.Ala629ProfsTer8	p.A629Pfs*8	ENST00000320574	NM_006231.2	629	Gcc/cc																																																																														
FLT1	0	MSKCC	GRCh37	13	29004254	29004254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143093353		P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	61	495	0	ENST00000282397.4:c.1039G>A	p.Val347Ile	p.V347I	ENST00000282397	NM_002019.4	347	Gta/Ata																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914389	32914389	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	51	631	0	ENST00000380152.3:c.5897A>G	p.His1966Arg	p.H1966R	ENST00000380152		1966	cAt/cGt																																																																														
SPRED1	0	MSKCC	GRCh37	15	38616977	38616977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	50	548	0	ENST00000299084.4:c.395delA	p.Asn132MetfsTer20	p.N132Mfs*20	ENST00000299084	NM_152594.2	130	tcA/tc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88423656	88423656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	34	354	0	ENST00000360948.2:c.2179G>A	p.Gly727Arg	p.G727R	ENST00000360948	NM_001012338.2	727	Gga/Aga																																																																														
IDH2	0	MSKCC	GRCh37	15	90631683	90631683	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	71	699	0	ENST00000330062.3:c.586T>G	p.Phe196Val	p.F196V	ENST00000330062	NM_002168.2	196	Ttc/Gtc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993125	72993125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1327	106	937	0	ENST00000268489.5:c.920T>C	p.Met307Thr	p.M307T	ENST00000268489	NM_006885.3	307	aTg/aCg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349556	89349556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	105	794	0	ENST00000301030.4:c.3394G>T	p.Gly1132Trp	p.G1132W	ENST00000301030	NM_001256183.1	1132	Ggg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435079	56435079	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	36	566	0	ENST00000407977.2:c.2058del	p.Ser687ValfsTer13	p.S687Vfs*13	ENST00000407977		686	ccC/cc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78899254	78899254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	59	518	0	ENST00000306801.3:c.2893C>T	p.Arg965Cys	p.R965C	ENST00000306801	NM_020761.2	965	Cgc/Tgc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302417	15302417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	112	925	1	ENST00000263388.2:c.854G>A	p.Cys285Tyr	p.C285Y	ENST00000263388	NM_000435.2	285	tGc/tAc																																																																														
BRD4	0	MSKCC	GRCh37	19	15355059	15355059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	98	890	4	ENST00000263377.2:c.2564C>T	p.Ala855Val	p.A855V	ENST00000263377	NM_058243.2	855	gCa/gTa																																																																														
MYCN	0	MSKCC	GRCh37	2	16085659	16085659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	110	726	0	ENST00000281043.3:c.835G>A	p.Val279Met	p.V279M	ENST00000281043	NM_005378.4	279	Gtg/Atg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25967279	25967279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	30	392	0	ENST00000435504.4:c.1927C>A	p.Pro643Thr	p.P643T	ENST00000435504		643	Cca/Aca																																																																														
ASXL2	0	MSKCC	GRCh37	2	25991697	25991697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	50	405	0	ENST00000435504.4:c.545G>A	p.Cys182Tyr	p.C182Y	ENST00000435504		182	tGc/tAc																																																																														
SOS1	0	MSKCC	GRCh37	2	39294894	39294894	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	48	582	0	ENST00000402219.2:c.88G>A	p.Val30Ile	p.V30I	ENST00000402219	NM_005633.3	30	Gtc/Atc																																																																														
ERCC3	0	MSKCC	GRCh37	2	128038167	128038167	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	94	610	0	ENST00000285398.2:c.1383C>G	p.His461Gln	p.H461Q	ENST00000285398	NM_000122.1	461	caC/caG																																																																														
CASP8	0	MSKCC	GRCh37	2	202136244	202136244	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	67	518	0	ENST00000358485.4:c.488T>C	p.Met163Thr	p.M163T	ENST00000358485	NM_001080125.1	163	aTg/aCg																																																																														
IRS1	0	MSKCC	GRCh37	2	227661614	227661614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	49	524	0	ENST00000305123.5:c.1841C>T	p.Pro614Leu	p.P614L	ENST00000305123	NM_005544.2	614	cCc/cTc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024202	31024202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	91	742	1	ENST00000375687.4:c.3687G>A	p.Met1229Ile	p.M1229I	ENST00000375687	NM_015338.5	1229	atG/atA																																																																														
SRC	0	MSKCC	GRCh37	20	36026171	36026171	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	95	834	1	ENST00000358208.4:c.773T>C	p.Leu258Pro	p.L258P	ENST00000358208		258	cTg/cCg																																																																														
BAP1	0	MSKCC	GRCh37	3	52436341	52436341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	65	489	0	ENST00000460680.1:c.2153G>A	p.Arg718Gln	p.R718Q	ENST00000460680	NM_004656.3	718	cGg/cAg																																																																														
BAP1	0	MSKCC	GRCh37	3	52437157	52437157	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	56	576	0	ENST00000460680.1:c.1887delC	p.Lys630ArgfsTer7	p.K630Rfs*7	ENST00000460680	NM_004656.3	629	ccC/cc																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665410	138665410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	129	796	1	ENST00000330315.3:c.155C>T	p.Ala52Val	p.A52V	ENST00000330315	NM_023067.3	52	gCg/gTg																																																																														
SOX2	0	MSKCC	GRCh37	3	181430946	181430946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	84	759	2	ENST00000325404.1:c.798G>T	p.Gln266His	p.Q266H	ENST00000325404	NM_003106.3	266	caG/caT																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920189	1920189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	144	851	0	ENST00000382891.5:c.1249G>A	p.Asp417Asn	p.D417N	ENST00000382891	NM_133335.3	417	Gac/Aac																																																																														
FBXW7	0	MSKCC	GRCh37	4	153253872	153253872	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	50	423	0	ENST00000281708.4:c.862-1G>A		p.X288_splice	ENST00000281708	NM_033632.3	288																																																																															
FAT1	2195	MSKCC	GRCh37	4	187630604	187630605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	87	761	0	ENST00000441802.2:c.377dup	p.Asn126LysfsTer3	p.N126Kfs*3	ENST00000441802	NM_005245.3	126	aat/aaAt																																																																														
MSH3	0	MSKCC	GRCh37	5	80057459	80057459	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200337887		P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	37	547	0	ENST00000265081.6:c.1858G>A	p.Asp620Asn	p.D620N	ENST00000265081	NM_002439.4	620	Gac/Aac																																																																														
FLT4	0	MSKCC	GRCh37	5	180048698	180048698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	49	575	2	ENST00000261937.6:c.1864G>A	p.Ala622Thr	p.A622T	ENST00000261937	NM_182925.4	622	Gcc/Acc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32165125	32165125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	71	574	1	ENST00000375023.3:c.5003G>A	p.Arg1668His	p.R1668H	ENST00000375023	NM_004557.3	1668	cGc/cAc																																																																														
TAP1	0	MSKCC	GRCh37	6	32819964	32819964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1328	115	932	1	ENST00000354258.4:c.946G>A	p.Val316Met	p.V316M	ENST00000354258	NM_000593.5	316	Gtg/Atg																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540353	23540353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	58	516	0	ENST00000380871.4:c.50C>G	p.Ala17Gly	p.A17G	ENST00000380871	NM_006167.3	17	gCc/gGc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53239947	53239947	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	91	788	0	ENST00000375401.3:c.1494G>T	p.Lys498Asn	p.K498N	ENST00000375401	NM_004187.3	498	aaG/aaT																																																																														
AR	0	MSKCC	GRCh37	X	66766333	66766333	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	28	297	0	ENST00000374690.3:c.1346delC	p.Pro449ArgfsTer30	p.P449Rfs*30	ENST00000374690	NM_000044.3	449	Ccg/cg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	207	796	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	103	347	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52623083	52623084	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	ACCAGCTGAATCCTCCCACAGTCTTTCAATACAGACGATATGTGGTTGTAGG			P-0017928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	97	513	0	ENST00000394830.3:c.2916_2965+2dup		p.X972_splice	ENST00000394830	NM_018313.4	972																																																																															
ARID1A	0	MSKCC	GRCh37	1	27058033	27058033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	80	461	0	ENST00000324856.7:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000324856	NM_006015.4	581	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	121	484	1	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584787	48584787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	143	526	0	ENST00000342988.3:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000342988	NM_005359.5	289	Cag/Tag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	44	587	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
RHOA	0	MSKCC	GRCh37	3	49413009	49413009	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552758		P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	151	668	1	ENST00000418115.1:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000418115	NM_001664.2	5	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	26	159	0	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32953937	32953937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	104	499	0	ENST00000380152.3:c.9004G>A	p.Glu3002Lys	p.E3002K	ENST00000380152		3002	Gaa/Aaa																																																																														
SLX4	0	MSKCC	GRCh37	16	3632519	3632519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	92	672	0	ENST00000294008.3:c.5329G>C	p.Glu1777Gln	p.E1777Q	ENST00000294008	NM_032444.2	1777	Gag/Cag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857875	9857875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	60	472	0	ENST00000330684.3:c.3526G>C	p.Glu1176Gln	p.E1176Q	ENST00000330684	NM_001134407.1	1176	Gag/Cag																																																																														
CDH1	0	MSKCC	GRCh37	16	68844175	68844175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	138	660	0	ENST00000261769.5:c.763C>T	p.Gln255Ter	p.Q255*	ENST00000261769	NM_004360.3	255	Cag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47125873	47125873	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	45	154	0	ENST00000409792.3:c.5398-1G>C		p.X1800_splice	ENST00000409792	NM_014159.6	1800																																																																															
BCL6	0	MSKCC	GRCh37	3	187451474	187451474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145456310		P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	72	345	0	ENST00000232014.4:c.8C>T	p.Ser3Leu	p.S3L	ENST00000232014	NM_001130845.1	3	tCg/tTg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468319	50468319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	80	454	0	ENST00000331340.3:c.1554G>C	p.Met518Ile	p.M518I	ENST00000331340	NM_006060.4	518	atG/atC																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139397678	139397678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	85	513	0	ENST00000277541.6:c.5123C>T	p.Ser1708Leu	p.S1708L	ENST00000277541	NM_017617.3	1708	tCg/tTg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223811	53223811	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	162	838	0	ENST00000375401.3:c.3548C>G	p.Ser1183Cys	p.S1183C	ENST00000375401	NM_004187.3	1183	tCt/tGt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	228	621	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060711	38060711	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0017932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	181	935	0	ENST00000250448.2:c.1278C>G	p.Tyr426Ter	p.Y426*	ENST00000250448	NM_004496.3	426	taC/taG																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426268	49426268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	266	750	0	ENST00000301067.7:c.12220C>A	p.Gln4074Lys	p.Q4074K	ENST00000301067	NM_003482.3	4074	Caa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	38	639	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
PTEN	0	MSKCC	GRCh37	10	89711874	89711874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0017935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	28	403	0	ENST00000371953.3:c.493-1G>A		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																															
RB1	0	MSKCC	GRCh37	13	49047507	49047507	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	67	373	0	ENST00000267163.4:c.2501C>G	p.Ser834Ter	p.S834*	ENST00000267163	NM_000321.2	834	tCa/tGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	302	445	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	1030	690	1	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	1042	637	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
RB1	0	MSKCC	GRCh37	13	48951171	48951171	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	174	354	0	ENST00000267163.4:c.1332+1G>A		p.X444_splice	ENST00000267163	NM_000321.2	444																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11097172	11097172	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	428	579	0	ENST00000344626.4:c.663delT	p.Pro222HisfsTer81	p.P222Hfs*81	ENST00000344626	NM_003072.3	221	ccT/cc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729313	41729313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	578	372	0	ENST00000242208.4:c.1216G>C	p.Asp406His	p.D406H	ENST00000242208	NM_002192.2	406	Gat/Cat																																																																														
INHBA	0	MSKCC	GRCh37	7	41730069	41730069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	712	468	0	ENST00000242208.4:c.460G>C	p.Glu154Gln	p.E154Q	ENST00000242208	NM_002192.2	154	Gaa/Caa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	159	599	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974747	21974747	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	27	209	0	ENST00000304494.5:c.80A>G	p.Glu27Gly	p.E27G	ENST00000304494	NM_000077.4	27	gAg/gGg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974747	21974747	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	27	209	0	ENST00000304494.5:c.80A>G	p.Glu27Gly	p.E27G	ENST00000304494	NM_000077.4	27	gAg/gGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	113	734	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111526	8111526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	224	796	0	ENST00000346208.3:c.1012T>C	p.Cys338Arg	p.C338R	ENST00000346208		338	Tgc/Cgc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81965247	81965247	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	158	484	0	ENST00000359376.3:c.2727G>C	p.Lys909Asn	p.K909N	ENST00000359376	NM_002661.3	909	aaG/aaC																																																																														
BRAF	0	MSKCC	GRCh37	7	140534432	140534432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	66	406	0	ENST00000288602.6:c.481C>A	p.Leu161Met	p.L161M	ENST00000288602	NM_004333.4	161	Ctg/Atg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0017943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	26	271	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0017943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	153	886	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
FLT1	0	MSKCC	GRCh37	13	28893589	28893589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	64	683	0	ENST00000282397.4:c.3257G>A	p.Gly1086Glu	p.G1086E	ENST00000282397	NM_002019.4	1086	gGa/gAa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	67	451	0	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																														
SPEN	0	MSKCC	GRCh37	1	16247399	16247399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	44	425	0	ENST00000375759.3:c.1670T>C	p.Val557Ala	p.V557A	ENST00000375759	NM_015001.2	557	gTt/gCt																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850733	63850733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	159	678	0	ENST00000279873.7:c.1511C>T	p.Ser504Leu	p.S504L	ENST00000279873	NM_032199.2	504	tCa/tTa																																																																														
CALR	0	MSKCC	GRCh37	19	13051199	13051199	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	86	716	0	ENST00000316448.5:c.635A>G	p.Asp212Gly	p.D212G	ENST00000316448	NM_004343.3	212	gAt/gGt																																																																														
INPP4A	0	MSKCC	GRCh37	2	99162432	99162432	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0017943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	92	607	0	ENST00000074304.5:c.950G>A	p.Gly317Glu	p.G317E	ENST00000074304	NM_001134224.1	317	gGg/gAg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99182548	99182548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	206	657	1	ENST00000074304.5:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000074304	NM_001134224.1	784	cGg/cAg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248686	212248686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	58	443	0	ENST00000342788.4:c.3581G>A	p.Gly1194Asp	p.G1194D	ENST00000342788	NM_005235.2	1194	gGt/gAt																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128305352	128305352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	97	878	1	ENST00000265960.3:c.944C>T	p.Ser315Phe	p.S315F	ENST00000265960	NM_001006617.1	315	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0017944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	261	823	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0017944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	70	529	0	ENST00000269305.4:c.681_682insTT	p.Asp228LeufsTer20	p.D228Lfs*20	ENST00000269305	NM_001126112.2	227	-/TT																																																																														
BRCA1	0	MSKCC	GRCh37	17	41246068	41246427	+	inframe_deletion	In_Frame_Del	DEL	GTATTATCTGTGGCTCAGTAACAAATGCTCCTATAATTAGATTTTCAGTTACATGGCTTAAGTTGGGGAGGCTTGCCTTCTTCCGATAGGTTTTCCCAAATATTTTGTCTTCAATATTACTCTCTACTGATTTGGAGTGAACTCTTTCACTTTTACATATTAAAGCCTCATGAGGATCACTGGCCAGTAAGTCTATTTTCTCTGAAGAACCAGAATATTCATCTACCTCATTTAGAACGTCCAATACATCAGCTACTTTGGCATTTGATTCAGACTCCCCATCATGTGAGTCATCAGAACCTAACAGTTCATCACTTCTGGAAAACCACTCATTAACTTTCTGAATGCTGCTATTTAGTG	GTATTATCTGTGGCTCAGTAACAAATGCTCCTATAATTAGATTTTCAGTTACATGGCTTAAGTTGGGGAGGCTTGCCTTCTTCCGATAGGTTTTCCCAAATATTTTGTCTTCAATATTACTCTCTACTGATTTGGAGTGAACTCTTTCACTTTTACATATTAAAGCCTCATGAGGATCACTGGCCAGTAAGTCTATTTTCTCTGAAGAACCAGAATATTCATCTACCTCATTTAGAACGTCCAATACATCAGCTACTTTGGCATTTGATTCAGACTCCCCATCATGTGAGTCATCAGAACCTAACAGTTCATCACTTCTGGAAAACCACTCATTAACTTTCTGAATGCTGCTATTTAGTG	-			P-0017944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	196	606	0	ENST00000357654.3:c.1121_1480delCACTAAATAGCAGCATTCAGAAAGTTAATGAGTGGTTTTCCAGAAGTGATGAACTGTTAGGTTCTGATGACTCACATGATGGGGAGTCTGAATCAAATGCCAAAGTAGCTGATGTATTGGACGTTCTAAATGAGGTAGATGAATATTCTGGTTCTTCAGAGAAAATAGACTTACTGGCCAGTGATCCTCATGAGGCTTTAATATGTAAAAGTGAAAGAGTTCACTCCAAATCAGTAGAGAGTAATATTGAAGACAAAATATTTGGGAAAACCTATCGGAAGAAGGCAAGCCTCCCCAACTTAAGCCATGTAACTGAAAATCTAATTATAGGAGCATTTGTTACTGAGCCACAGATAATAC	p.Thr374_Gln494delinsLys	p.T374_Q494delinsK	ENST00000357654	NM_007294.3	374	aCACTAAATAGCAGCATTCAGAAAGTTAATGAGTGGTTTTCCAGAAGTGATGAACTGTTAGGTTCTGATGACTCACATGATGGGGAGTCTGAATCAAATGCCAAAGTAGCTGATGTATTGGACGTTCTAAATGAGGTAGATGAATATTCTGGTTCTTCAGAGAAAATAGACTTACTGGCCAGTGATCCTCATGAGGCTTTAATATGTAAAAGTGAAAGAGTTCACTCCAAATCAGTAGAGAGTAATATTGAAGACAAAATATTTGGGAAAACCTATCGGAAGAAGGCAAGCCTCCCCAACTTAAGCCATGTAACTGAAAATCTAATTATAGGAGCATTTGTTACTGAGCCACAGATAATACaa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	150	549	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	245	845	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
RYBP	0	MSKCC	GRCh37	3	72495749	72495749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	127	503	0	ENST00000477973.2:c.321C>T	p.Ala108Val	p.A108V	ENST00000477973	NM_012234.5	108	gCc/gTc																																																																														
RB1	0	MSKCC	GRCh37	13	48937094	48937094	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0017945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	86	253	0	ENST00000267163.4:c.861+1G>C		p.X287_splice	ENST00000267163	NM_000321.2	287																																																																															
PMS1	0	MSKCC	GRCh37	2	190732623	190732623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	160	611	0	ENST00000441310.2:c.2441C>T	p.Thr814Ile	p.T814I	ENST00000441310	NM_000534.4	814	aCa/aTa																																																																														
SPEN	0	MSKCC	GRCh37	1	16257113	16257113	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	168	495	1	ENST00000375759.3:c.4378G>T	p.Glu1460Ter	p.E1460*	ENST00000375759	NM_015001.2	1460	Gaa/Taa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49422703	49422703	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	139	477	1	ENST00000301067.7:c.14290G>T	p.Glu4764Ter	p.E4764*	ENST00000301067	NM_003482.3	4764	Gag/Tag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43701205	43701205	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	130	532	0	ENST00000382044.4:c.5490T>A	p.Cys1830Ter	p.C1830*	ENST00000382044	NM_001141980.1	1830	tgT/tgA																																																																														
BLM	0	MSKCC	GRCh37	15	91293268	91293268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	96	314	0	ENST00000355112.3:c.770C>G	p.Ser257Cys	p.S257C	ENST00000355112	NM_000057.2	257	tCt/tGt																																																																														
MALT1	0	MSKCC	GRCh37	18	56378179	56378179	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	138	353	0	ENST00000348428.3:c.952A>T	p.Thr318Ser	p.T318S	ENST00000348428	NM_006785.3	318	Act/Tct																																																																														
BRD4	0	MSKCC	GRCh37	19	15375218	15375218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	30	285	0	ENST00000263377.2:c.1209C>G	p.Ile403Met	p.I403M	ENST00000263377	NM_058243.2	403	atC/atG																																																																														
SF3B1	0	MSKCC	GRCh37	2	198260836	198260836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	84	494	0	ENST00000335508.6:c.3483G>T	p.Met1161Ile	p.M1161I	ENST00000335508	NM_012433.2	1161	atG/atT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248768	212248768	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	53	219	0	ENST00000342788.4:c.3499G>T	p.Glu1167Ter	p.E1167*	ENST00000342788	NM_005235.2	1167	Gag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47164411	47164411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	40	238	0	ENST00000409792.3:c.1715C>T	p.Ser572Phe	p.S572F	ENST00000409792	NM_014159.6	572	tCt/tTt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528544	89528544	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	A			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	38	205	0	ENST00000336596.2:c.2847-3C>A		p.X949_splice	ENST00000336596	NM_005233.5	949																																																																															
HIST1H1C	0	MSKCC	GRCh37	6	26056591	26056591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	23	153	0	ENST00000343677.2:c.66G>C	p.Lys22Asn	p.K22N	ENST00000343677	NM_005319.3	22	aaG/aaC																																																																														
CARD11	0	MSKCC	GRCh37	7	2984066	2984066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	85	356	0	ENST00000396946.4:c.464G>A	p.Arg155Lys	p.R155K	ENST00000396946	NM_032415.4	155	aGg/aAg																																																																														
SMO	0	MSKCC	GRCh37	7	128852044	128852044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	59	545	0	ENST00000249373.3:c.2116C>G	p.Gln706Glu	p.Q706E	ENST00000249373	NM_005631.4	706	Cag/Gag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874991	151874991	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	32	216	0	ENST00000262189.6:c.7547G>C	p.Arg2516Thr	p.R2516T	ENST00000262189	NM_170606.2	2516	aGa/aCa																																																																														
PREX2	0	MSKCC	GRCh37	8	68934334	68934334	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1366	84	671	0	ENST00000288368.4:c.400C>G	p.Leu134Val	p.L134V	ENST00000288368	NM_024870.2	134	Ctt/Gtt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591247	67591247	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0017957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	301	456	0	ENST00000274335.5:c.1746-1G>C		p.X582_splice	ENST00000274335		582																																																																															
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	30	469	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	165	620	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
VHL	0	MSKCC	GRCh37	3	10188280	10188281	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0017959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	159	621	0	ENST00000256474.2:c.424_425delGT	p.Val142Ter	p.V142*	ENST00000256474	NM_000551.3	141	aaTGtt/aatt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52610715	52610715	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	70	346	0	ENST00000394830.3:c.3459-1G>T		p.X1153_splice	ENST00000394830	NM_018313.4	1153																																																																															
TSC1	0	MSKCC	GRCh37	9	135782721	135782721	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0017959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	111	460	0	ENST00000298552.3:c.1300A>T	p.Arg434Ter	p.R434*	ENST00000298552	NM_001162426.1	434	Aga/Tga																																																																														
SPOP	0	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	89	552	0	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc																																																																														
MTOR	0	MSKCC	GRCh37	1	11182139	11182142	+	frameshift_variant	Frame_Shift_Del	DEL	AGGC	AGGC	GG			P-0017960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	194	509	1	ENST00000361445.4:c.6704_6707delGCCTinsCC	p.Gly2235AlafsTer9	p.G2235Afs*9	ENST00000361445	NM_004958.3	2235	gGCCTc/gCCc																																																																														
APC	0	MSKCC	GRCh37	5	112162875	112162875	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	100	476	0	ENST00000257430.4:c.1479C>G	p.Tyr493Ter	p.Y493*	ENST00000257430	NM_000038.5	493	taC/taG																																																																														
KMT2C	0	MSKCC	GRCh37	7	151836301	151836301	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	180	443	0	ENST00000262189.6:c.14504T>C	p.Ile4835Thr	p.I4835T	ENST00000262189	NM_170606.2	4835	aTt/aCt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921450	39921451	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	139	214	0	ENST00000378444.4:c.4369dup	p.Ile1457AsnfsTer4	p.I1457Nfs*4	ENST00000378444	NM_001123385.1	1457	att/aAtt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44928900	44928900	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	111	254	0	ENST00000377967.4:c.2000delA	p.Gln667ArgfsTer24	p.Q667Rfs*24	ENST00000377967	NM_021140.2	667	cAg/cg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	267	273	0				ENST00000310581	NM_198253.2																																																																																
PTEN	0	MSKCC	GRCh37	10	89692991	89692991	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	150	364	0	ENST00000371953.3:c.475A>G	p.Arg159Gly	p.R159G	ENST00000371953	NM_000314.4	159	Agg/Ggg																																																																														
ATM	0	MSKCC	GRCh37	11	108200963	108200971	+	inframe_deletion	In_Frame_Del	DEL	GAGCTGGAG	GAGCTGGAG	-			P-0017965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	35	311	0	ENST00000278616.4:c.7330_7338delGAGCTGGAG	p.Glu2444_Glu2446del	p.E2444_E2446del	ENST00000278616	NM_000051.3	2444	GAGCTGGAG/-																																																																														
CD79B	0	MSKCC	GRCh37	17	62007591	62007596	+	inframe_deletion	In_Frame_Del	DEL	CAGCTT	CAGCTT	-			P-0017965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1295	85	466	0	ENST00000392795.3:c.271_276delAAGCTG	p.Lys91_Leu92del	p.K91_L92del	ENST00000392795	NM_001039933.1	91	AAGCTG/-																																																																														
ASXL2	0	MSKCC	GRCh37	2	25973168	25973169	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0017965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	49	322	0	ENST00000435504.4:c.1256_1257delTT	p.Leu419HisfsTer13	p.L419Hfs*13	ENST00000435504		419	cTT/c																																																																														
PTPRT	0	MSKCC	GRCh37	20	40747075	40747075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199637632		P-0017965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	78	446	1	ENST00000373198.4:c.3007G>A	p.Val1003Ile	p.V1003I	ENST00000373198	NM_133170.3	1003	Gtc/Atc																																																																														
SETD2	0	MSKCC	GRCh37	3	47129729	47129732	+	frameshift_variant	Frame_Shift_Del	DEL	TCCA	TCCA	-			P-0017965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	131	346	0	ENST00000409792.3:c.5148_5151delTGGA	p.Asp1716GlufsTer3	p.D1716Efs*3	ENST00000409792	NM_014159.6	1716	gaTGGA/ga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	90	342	0				ENST00000310581	NM_198253.2																																																																																
PDGFRA	0	MSKCC	GRCh37	4	55133561	55133561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	129	523	0	ENST00000257290.5:c.865G>A	p.Glu289Lys	p.E289K	ENST00000257290	NM_006206.4	289	Gaa/Aaa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827732	72827732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	170	453	1	ENST00000268489.5:c.8849G>A	p.Arg2950His	p.R2950H	ENST00000268489	NM_006885.3	2950	cGc/cAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47164873	47164873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	87	336	0	ENST00000409792.3:c.1253C>T	p.Ser418Phe	p.S418F	ENST00000409792	NM_014159.6	418	tCc/tTc																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	200	554	2	ENST00000288602.6:c.1798_1799delGTinsAG	p.Val600Arg	p.V600R	ENST00000288602	NM_004333.4	600	GTg/AGg																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858461	27858461	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	103	253	0	ENST00000359303.2:c.110A>T	p.Lys37Met	p.K37M	ENST00000359303	NM_003535.2	37	aAg/aTg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111429	56111429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	92	288	0	ENST00000399503.3:c.29C>T	p.Ser10Leu	p.S10L	ENST00000399503	NM_005921.1	10	tCg/tTg																																																																														
GATA3	0	MSKCC	GRCh37	10	8100418	8100418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	152	738	0	ENST00000346208.3:c.392C>T	p.Ser131Phe	p.S131F	ENST00000346208		131	tCc/tTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89653829	89653831	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	35	495	0	ENST00000371953.3:c.128_130delAAG	p.Glu43del	p.E43del	ENST00000371953	NM_000314.4	43	GAA/-																																																																														
INSR	0	MSKCC	GRCh37	19	7125533	7125533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	127	472	0	ENST00000302850.5:c.3019C>T	p.Pro1007Ser	p.P1007S	ENST00000302850	NM_000208.2	1007	Cca/Tca																																																																														
PAK7	0	MSKCC	GRCh37	20	9546872	9546872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	107	314	0	ENST00000353224.5:c.1150C>T	p.His384Tyr	p.H384Y	ENST00000353224	NM_177990.2	384	Cat/Tat																																																																														
PAK7	0	MSKCC	GRCh37	20	9561211	9561211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	119	424	1	ENST00000353224.5:c.571G>A	p.Asp191Asn	p.D191N	ENST00000353224	NM_177990.2	191	Gat/Aat																																																																														
SRC	0	MSKCC	GRCh37	20	36031733	36031733	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	158	591	0	ENST00000358208.4:c.1562A>G	p.Asp521Gly	p.D521G	ENST00000358208		521	gAc/gGc																																																																														
ERG	0	MSKCC	GRCh37	21	39755558	39755558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	123	359	1	ENST00000288319.7:c.1207C>T	p.Pro403Ser	p.P403S	ENST00000288319	NM_182918.3	403	Ccc/Tcc																																																																														
TP63	0	MSKCC	GRCh37	3	189526161	189526161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	182	594	0	ENST00000264731.3:c.425G>A	p.Ser142Asn	p.S142N	ENST00000264731	NM_003722.4	142	aGc/aAc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156493	55156493	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	117	393	0	ENST00000257290.5:c.2894T>A	p.Ile965Asn	p.I965N	ENST00000257290	NM_006206.4	965	aTt/aAt																																																																														
PLK2	0	MSKCC	GRCh37	5	57750603	57750603	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	83	393	0	ENST00000274289.3:c.1867-2A>G		p.X623_splice	ENST00000274289	NM_006622.3	623																																																																															
E2F3	0	MSKCC	GRCh37	6	20402494	20402494	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	144	628	0	ENST00000346618.3:c.31C>T	p.Gln11Ter	p.Q11*	ENST00000346618	NM_001949.4	11	Cag/Tag																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553668	106553668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	152	466	0	ENST00000369096.4:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000369096	NM_001198.3	545	Gaa/Aaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878073	151878073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	154	354	0	ENST00000262189.6:c.6872C>T	p.Ser2291Phe	p.S2291F	ENST00000262189	NM_170606.2	2291	tCc/tTc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0017967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	355	583	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153259064	153259064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	168	261	0	ENST00000281708.4:c.751C>T	p.Leu251Phe	p.L251F	ENST00000281708	NM_033632.3	251	Ctt/Ttt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	240	452	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161148	56161190	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTTTTTAACTCTTTAGAACTGCAGCTGTGCACGTGGAACA	TTTCTTTTTAACTCTTTAGAACTGCAGCTGTGCACGTGGAACA	-			P-0017970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	163	224	0	ENST00000399503.3:c.1036-17_1061delTCTTTTTAACTCTTTAGAACTGCAGCTGTGCACGTGGAACATT		p.X346_splice	ENST00000399503	NM_005921.1	346																																																																															
MAP3K1	0	MSKCC	GRCh37	5	56170909	56170910	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0017970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	118	278	0	ENST00000399503.3:c.1743_1744delGA	p.Glu581AspfsTer9	p.E581Dfs*9	ENST00000399503	NM_005921.1	579	gtGAga/gtga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0017975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	43	842	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0017977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4251	234	929	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	213	944	0	ENST00000397062.3:c.229G>C	p.Asp77His	p.D77H	ENST00000397062	NM_006164.4	77	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577101	7577101	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	174	1091	3	ENST00000269305.4:c.837del	p.Arg280GlufsTer65	p.R280Efs*65	ENST00000269305	NM_001126112.2	279	ggG/gg																																																																														
DDR2	0	MSKCC	GRCh37	1	162749964	162749964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	175	969	0	ENST00000367921.3:c.2496G>C	p.Trp832Cys	p.W832C	ENST00000367921	NM_006182.2	832	tgG/tgC																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713543	30713543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	135	742	0	ENST00000359013.4:c.943G>A	p.Glu315Lys	p.E315K	ENST00000359013	NM_001024847.2	315	Gag/Aag																																																																														
KDM5C	0	MSKCC	GRCh37	X	53250047	53250047	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	170	971	0	ENST00000375401.3:c.202C>T	p.Arg68Ter	p.R68*	ENST00000375401	NM_004187.3	68	Cga/Tga																																																																														
FGF19	0	MSKCC	GRCh37	11	69514257	69514257	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	50	832	0	ENST00000294312.3:c.424C>G	p.Pro142Ala	p.P142A	ENST00000294312	NM_005117.2	142	Ccg/Gcg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221737	36221737	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	64	978	0	ENST00000222270.7:c.5406G>C	p.Gln1802His	p.Q1802H	ENST00000222270	NM_014727.1	1802	caG/caC																																																																														
PAK7	0	MSKCC	GRCh37	20	9561376	9561376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	38	594	2	ENST00000353224.5:c.406G>A	p.Asp136Asn	p.D136N	ENST00000353224	NM_177990.2	136	Gat/Aat																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	43	557	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	43	557	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	177	962	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	67	706	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	43	557	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5220000	5220000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	40	791	0	ENST00000357368.4:c.3715G>A	p.Gly1239Ser	p.G1239S	ENST00000357368	NM_002850.3	1239	Ggc/Agc																																																																														
POLE	0	MSKCC	GRCh37	12	133219240	133219240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	31	868	0	ENST00000320574.5:c.4804G>A	p.Val1602Ile	p.V1602I	ENST00000320574	NM_006231.2	1602	Gtc/Atc																																																																														
TSC2	0	MSKCC	GRCh37	16	2131775	2131777	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	42	751	0	ENST00000219476.3:c.3794_3796delCTC	p.Pro1265del	p.P1265del	ENST00000219476	NM_000548.3	1264	CCT/-																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101199	41101199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	31	707	2	ENST00000373198.4:c.1157C>T	p.Pro386Leu	p.P386L	ENST00000373198	NM_133170.3	386	cCg/cTg																																																																														
KIT	0	MSKCC	GRCh37	4	55599341	55599341	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	180	902	0	ENST00000288135.5:c.2467T>G	p.Tyr823Asp	p.Y823D	ENST00000288135	NM_000222.2	823	Tat/Gat																																																																														
KIT	0	MSKCC	GRCh37	4	55593587	55593604	+	inframe_deletion	In_Frame_Del	DEL	CATGTATGAAGTACAGTG	CATGTATGAAGTACAGTG	-			P-0017982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	177	697	0	ENST00000288135.5:c.1653_1670delCATGTATGAAGTACAGTG	p.Met552_Trp557del	p.M552_W557del	ENST00000288135	NM_000222.2	551	ccCATGTATGAAGTACAGTGg/ccg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9928080	9928080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	137	664	0	ENST00000330684.3:c.1659C>G	p.Phe553Leu	p.F553L	ENST00000330684	NM_001134407.1	553	ttC/ttG																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	109	643	1	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	104	602	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SOX9	0	MSKCC	GRCh37	17	70117888	70117888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	260	507	0	ENST00000245479.2:c.356C>A	p.Ala119Glu	p.A119E	ENST00000245479	NM_000346.3	119	gCg/gAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	117	566	1	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274704	123274704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	129	794	0	ENST00000358487.5:c.1214A>G	p.Lys405Arg	p.K405R	ENST00000358487	NM_000141.4	405	aAg/aGg																																																																														
AKT3	0	MSKCC	GRCh37	1	243809254	243809254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	91	769	1	ENST00000263826.5:c.370C>A	p.Gln124Lys	p.Q124K	ENST00000263826	NM_005465.4	124	Caa/Aaa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778355	3778355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	123	559	0	ENST00000262367.5:c.6693C>G	p.Phe2231Leu	p.F2231L	ENST00000262367	NM_004380.2	2231	ttC/ttG																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573623	48573624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0017983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	113	626	1	ENST00000342988.3:c.209_210dup	p.Cys71AsnfsTer24	p.C71Nfs*24	ENST00000342988	NM_005359.5	69	-/AA																																																																														
EGFR	0	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0017985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	462	646	0	ENST00000275493.2:c.2314_2319dupCCCCAC	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0017985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	244	707	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
MTOR	0	MSKCC	GRCh37	1	11174875	11174875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	305	871	0	ENST00000361445.4:c.7159A>G	p.Met2387Val	p.M2387V	ENST00000361445	NM_004958.3	2387	Atg/Gtg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37865627	37865627	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	151	961	0	ENST00000269571.5:c.496A>G	p.Thr166Ala	p.T166A	ENST00000269571		166	Acg/Gcg																																																																														
NSD1	0	MSKCC	GRCh37	5	176562990	176562990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	148	742	1	ENST00000439151.2:c.886C>T	p.Pro296Ser	p.P296S	ENST00000439151	NM_022455.4	296	Cct/Tct																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0017987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	23	376	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	52	753	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																														
MCL1	0	MSKCC	GRCh37	1	150549852	150549853	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	TA	TA	-			P-0017987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	387	639	0	ENST00000369026.2:c.1051_1052delTA	p.Ter351AlafsTer4	p.*351Afs*4	ENST00000369026	NM_021960.4	351	TAg/g																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434231	49434232	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	333	1236	0	ENST00000301067.7:c.7321dup	p.Thr2441AsnfsTer8	p.T2441Nfs*8	ENST00000301067	NM_003482.3	2441	acc/aAcc																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805694	46805694	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	218	978	0	ENST00000290295.7:c.262T>G	p.Tyr88Asp	p.Y88D	ENST00000290295	NM_006361.5	88	Tac/Gac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0017990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	121	685	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	96	958	2	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177011	56177014	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0017990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	140	578	0	ENST00000399503.3:c.2286_2289delTAGA	p.Arg763CysfsTer35	p.R763Cfs*35	ENST00000399503	NM_005921.1	761	ATAGat/at																																																																														
ARID1A	0	MSKCC	GRCh37	1	27059204	27059204	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0017990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	143	824	0	ENST00000324856.7:c.1841C>G	p.Ser614Ter	p.S614*	ENST00000324856	NM_006015.4	614	tCa/tGa																																																																														
CDC73	0	MSKCC	GRCh37	1	193218983	193218983	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	83	462	0	ENST00000367435.3:c.1541T>G	p.Phe514Cys	p.F514C	ENST00000367435	NM_024529.4	514	tTt/tGt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177827	56177828	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	127	547	0	ENST00000399503.3:c.2803dup	p.Ser935PhefsTer6	p.S935Ffs*6	ENST00000399503	NM_005921.1	934	att/aTtt																																																																														
ARID2	0	MSKCC	GRCh37	12	46123837	46123837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	50	396	0	ENST00000334344.6:c.109delA	p.Ile37SerfsTer21	p.I37Sfs*21	ENST00000334344	NM_152641.2	35	Aaa/aa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36231791	36231791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	72	959	0	ENST00000300305.3:c.593A>G	p.Asp198Gly	p.D198G	ENST00000300305		198	gAt/gGt																																																																														
WT1	0	MSKCC	GRCh37	11	32456321	32456321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	107	1129	2	ENST00000332351.3:c.571G>T	p.Gly191Cys	p.G191C	ENST00000332351	NM_024426.4	191	Ggc/Tgc																																																																														
LATS2	0	MSKCC	GRCh37	13	21562192	21562192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	152	1424	0	ENST00000382592.4:c.1727C>G	p.Ser576Cys	p.S576C	ENST00000382592	NM_014572.2	576	tCt/tGt																																																																														
STK11	0	MSKCC	GRCh37	19	1220634	1220635	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0017991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	101	812	0	ENST00000326873.7:c.652_653delGCinsT	p.Ala218PhefsTer69	p.A218Ffs*69	ENST00000326873	NM_000455.4	218	GCt/Tt																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	40	656	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	89	692	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	73	289	1	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
PGR	0	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	40	650	3	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga																																																																														
CSDE1	0	MSKCC	GRCh37	1	115263258	115263258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	43	905	0	ENST00000438362.2:c.2092G>C	p.Val698Leu	p.V698L	ENST00000438362	NM_001242891.1	698	Gtc/Ctc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30046663	30046663	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	47	619	0	ENST00000331968.5:c.2521-1G>T		p.X841_splice	ENST00000331968	NM_002742.2	841																																																																															
SMAD2	0	MSKCC	GRCh37	18	45371810	45371810	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	49	562	1	ENST00000262160.6:c.1181T>C	p.Leu394Pro	p.L394P	ENST00000262160	NM_005901.5	394	cTg/cCg																																																																														
EPCAM	0	MSKCC	GRCh37	2	47606006	47606147	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAATATTCTGATTCTCAATTAATGTTATTTTCAAATGATTTTGATTATATTAGTATTAATTTGTATTATTCAATTTTTTTCCCCAGTATGAGAATAATGTTATCACTATTGATCTGGTTCAAAATTCTTCTCAAAAAACTCA	GAATATTCTGATTCTCAATTAATGTTATTTTCAAATGATTTTGATTATATTAGTATTAATTTGTATTATTCAATTTTTTTCCCCAGTATGAGAATAATGTTATCACTATTGATCTGGTTCAAAATTCTTCTCAAAAAACTCA	-			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	16	99	0	ENST00000263735.4:c.556-82_615delATTCTGATTCTCAATTAATGTTATTTTCAAATGATTTTGATTATATTAGTATTAATTTGTATTATTCAATTTTTTTCCCCAGTATGAGAATAATGTTATCACTATTGATCTGGTTCAAAATTCTTCTCAAAAAACTCAGAAT		p.X186_splice	ENST00000263735	NM_002354.2	186																																																																															
EPCAM	0	MSKCC	GRCh37	2	47606183	47606183	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	22	479	0	ENST00000263735.4:c.647T>G	p.Phe216Cys	p.F216C	ENST00000263735	NM_002354.2	216	tTt/tGt																																																																														
ESR1	0	MSKCC	GRCh37	6	152265516	152265517	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	60	691	0	ENST00000206249.3:c.974dup	p.Ile326AspfsTer7	p.I326Dfs*7	ENST00000206249	NM_000125.3	323	-/C																																																																														
IGF1R	0	MSKCC	GRCh37	15	99456467	99456467	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56248469		P-0017993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	55	658	0	ENST00000268035.6:c.1784G>A	p.Arg595His	p.R595H	ENST00000268035	NM_000875.3	595	cGt/cAt																																																																														
MALT1	0	MSKCC	GRCh37	18	56363618	56363618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	36	520	1	ENST00000348428.3:c.397C>T	p.Pro133Ser	p.P133S	ENST00000348428	NM_006785.3	133	Cca/Tca																																																																														
ELF3	0	MSKCC	GRCh37	1	201984408	201984409	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	110	1094	1	ENST00000359651.3:c.1075dup	p.Ser359LysfsTer112	p.S359Kfs*112	ENST00000359651		358	tca/tcAa																																																																														
FLT1	0	MSKCC	GRCh37	13	29008324	29008324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	35	445	0	ENST00000282397.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000282397	NM_002019.4	183	Cgc/Tgc																																																																														
PALB2	0	MSKCC	GRCh37	16	23647248	23647248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	70	831	0	ENST00000261584.4:c.619C>T	p.Pro207Ser	p.P207S	ENST00000261584	NM_024675.3	207	Cca/Tca																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916930	178916935	+	inframe_deletion	In_Frame_Del	DEL	GCAACC	GCAACC	-			P-0017993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	58	823	0	ENST00000263967.3:c.318_323delCAACCG	p.Asn107_Arg108del	p.N107_R108del	ENST00000263967	NM_006218.2	106	gGCAACCgt/ggt																																																																														
FLT4	0	MSKCC	GRCh37	5	180046361	180046361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	64	638	0	ENST00000261937.6:c.2653G>A	p.Ala885Thr	p.A885T	ENST00000261937	NM_182925.4	885	Gcc/Acc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188365	32188365	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0017993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	67	859	0	ENST00000375023.3:c.976T>A	p.Cys326Ser	p.C326S	ENST00000375023	NM_004557.3	326	Tgc/Agc																																																																														
AGO2	0	MSKCC	GRCh37	8	141561417	141561417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	38	453	0	ENST00000220592.5:c.1388C>T	p.Thr463Met	p.T463M	ENST00000220592	NM_012154.3	463	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	164	789	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	61	645	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	88	503	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	93	887	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38978730	38978730	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	78	467	0	ENST00000357387.3:c.776A>G	p.Asp259Gly	p.D259G	ENST00000357387	NM_152756.3	259	gAt/gGt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103506176	103506176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	241	774	0	ENST00000355739.4:c.334A>G	p.Thr112Ala	p.T112A	ENST00000355739	NM_000123.3	112	Aca/Gca																																																																														
FANCA	0	MSKCC	GRCh37	16	89833645	89833645	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	106	512	1	ENST00000389301.3:c.2505A>T	p.Lys835Asn	p.K835N	ENST00000389301	NM_000135.2	835	aaA/aaT																																																																														
ALK	0	MSKCC	GRCh37	2	29754866	29754866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	63	412	1	ENST00000389048.3:c.1069C>T	p.Pro357Ser	p.P357S	ENST00000389048	NM_004304.4	357	Ccc/Tcc																																																																														
MSH3	0	MSKCC	GRCh37	5	80171592	80171592	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	92	766	0	ENST00000265081.6:c.3325A>G	p.Lys1109Glu	p.K1109E	ENST00000265081	NM_002439.4	1109	Aag/Gag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	302	878	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	130	705	2	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	124	706	1	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	192	951	1	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
CARD11	0	MSKCC	GRCh37	7	2962804	2962804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	495	884	2	ENST00000396946.4:c.2104G>A	p.Glu702Lys	p.E702K	ENST00000396946	NM_032415.4	702	Gag/Aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	166	671	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TET1	0	MSKCC	GRCh37	10	70441157	70441157	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	181	672	1	ENST00000373644.4:c.4832delA	p.Asn1611ThrfsTer13	p.N1611Tfs*13	ENST00000373644	NM_030625.2	1609	gAa/ga																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	121	689	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
JAK1	0	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	115	715	6	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	150	423	1	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	127	792	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	71	330	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	38	231	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																														
RNF43	0	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	236	846	1	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
BRD4	0	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	115	752	2	ENST00000263377.2:c.3061delC	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	211	683	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	308	1089	7	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	151	537	3	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	177	612	6	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
MITF	0	MSKCC	GRCh37	3	70008521	70008521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	199	839	1	ENST00000352241.4:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000352241	NM_198159.2	371	Cga/Tga																																																																														
INHA	0	MSKCC	GRCh37	2	220437230	220437230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	380	1295	1	ENST00000243786.2:c.134C>T	p.Ala45Val	p.A45V	ENST00000243786	NM_002191.3	45	gCg/gTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862850	9862850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	216	929	0	ENST00000330684.3:c.2453C>T	p.Ala818Val	p.A818V	ENST00000330684	NM_001134407.1	818	gCg/gTg																																																																														
SOX17	0	MSKCC	GRCh37	8	55372193	55372193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	97	264	0	ENST00000297316.4:c.883G>A	p.Val295Met	p.V295M	ENST00000297316	NM_022454.3	295	Gtg/Atg																																																																														
SUZ12	0	MSKCC	GRCh37	17	30264357	30264357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	38	191	0	ENST00000322652.5:c.92T>C	p.Val31Ala	p.V31A	ENST00000322652	NM_015355.2	31	gTg/gCg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	245	1000	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
MSH6	0	MSKCC	GRCh37	2	48026911	48026912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	133	534	0	ENST00000234420.5:c.1794dup	p.Gly599ArgfsTer8	p.G599Rfs*8	ENST00000234420	NM_000179.2	597	gaa/gAaa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424178	49424178	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	154	625	2	ENST00000301067.7:c.13884delC	p.Thr4629ProfsTer11	p.T4629Pfs*11	ENST00000301067	NM_003482.3	4628	ccC/cc																																																																														
FGF19	0	MSKCC	GRCh37	11	69518587	69518587	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114327249		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	220	479	2	ENST00000294312.3:c.58G>A	p.Val20Met	p.V20M	ENST00000294312	NM_005117.2	20	Gtg/Atg																																																																														
LATS2	0	MSKCC	GRCh37	13	21562577	21562577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	37	91	0	ENST00000382592.4:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000382592	NM_014572.2	448	Cgt/Tgt																																																																														
SPRED1	0	MSKCC	GRCh37	15	38616977	38616977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	164	644	0	ENST00000299084.4:c.395delA	p.Asn132MetfsTer20	p.N132Mfs*20	ENST00000299084	NM_152594.2	130	tcA/tc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780702	9780702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	46	673	0	ENST00000377346.4:c.1504C>T	p.His502Tyr	p.H502Y	ENST00000377346	NM_005026.3	502	Cat/Tat																																																																														
PARP1	0	MSKCC	GRCh37	1	226567718	226567719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	390	704	0	ENST00000366794.5:c.1447dup	p.Ala483GlyfsTer9	p.A483Gfs*9	ENST00000366794	NM_001618.3	483	gca/gGca																																																																														
RET	0	MSKCC	GRCh37	10	43623652	43623652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	125	930	0	ENST00000355710.3:c.3280A>G	p.Ser1094Gly	p.S1094G	ENST00000355710	NM_020975.4	1094	Agt/Ggt																																																																														
MEN1	0	MSKCC	GRCh37	11	64572272	64572272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	147	614	3	ENST00000337652.1:c.1382G>A	p.Arg461His	p.R461H	ENST00000337652	NM_130803.2	461	cGc/cAc																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67200086	67200086	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	180	628	0	ENST00000312629.5:c.473delC	p.Thr158SerfsTer53	p.T158Sfs*53	ENST00000312629	NM_003952.2	158	aCg/ag																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67200877	67200877	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	291	1157	3	ENST00000312629.5:c.870delC	p.Tyr291ThrfsTer14	p.Y291Tfs*14	ENST00000312629	NM_003952.2	289	Ccc/cc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514694	103514694	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs4150315		P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	148	488	2	ENST00000355739.4:c.1195G>A	p.Glu399Lys	p.E399K	ENST00000355739	NM_000123.3	399	Gaa/Aaa																																																																														
MGA	0	MSKCC	GRCh37	15	42003374	42003374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	181	690	5	ENST00000219905.7:c.2911C>T	p.Arg971Trp	p.R971W	ENST00000219905	NM_001164273.1	971	Cgg/Tgg																																																																														
CYLD	0	MSKCC	GRCh37	16	50811838	50811838	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	130	861	0	ENST00000398568.2:c.1115G>A	p.Trp372Ter	p.W372*	ENST00000398568	NM_001042412.1	372	tGg/tAg																																																																														
CDK12	0	MSKCC	GRCh37	17	37619315	37619315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	165	501	1	ENST00000447079.4:c.991C>T	p.Arg331Trp	p.R331W	ENST00000447079	NM_015083.1	331	Cgg/Tgg																																																																														
EZH1	0	MSKCC	GRCh37	17	40855817	40855817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	213	848	0	ENST00000428826.2:c.2039G>A	p.Arg680Gln	p.R680Q	ENST00000428826		680	cGg/cAg																																																																														
RNF43	0	MSKCC	GRCh37	17	56492739	56492739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	226	1071	0	ENST00000407977.2:c.200G>A	p.Gly67Asp	p.G67D	ENST00000407977		67	gGt/gAt																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740377	58740377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	157	795	0	ENST00000305921.3:c.1282C>T	p.Pro428Ser	p.P428S	ENST00000305921	NM_003620.3	428	Cca/Tca																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593548	48593549	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	64	262	0	ENST00000342988.3:c.1304_1305delTA	p.Ile435LysfsTer4	p.I435Kfs*4	ENST00000342988	NM_005359.5	433	gcATat/gcat																																																																														
TCF3	0	MSKCC	GRCh37	19	1622111	1622111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	252	872	2	ENST00000344749.5:c.764C>T	p.Pro255Leu	p.P255L	ENST00000344749	NM_001136139.2	255	cCg/cTg																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4123856	4123856	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	82	288	0	ENST00000262948.5:c.17A>C	p.Lys6Thr	p.K6T	ENST00000262948	NM_030662.3	6	aAg/aCg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610072	10610073	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	C			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	233	921	0	ENST00000171111.5:c.637dup	p.Glu213GlyfsTer137	p.E213Gfs*137	ENST00000171111	NM_203500.1	213	gag/gGag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223328	36223328	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	371	1393	5	ENST00000222270.7:c.5882delC	p.Pro1961LeufsTer26	p.P1961Lfs*26	ENST00000222270	NM_014727.1	1960	Ccc/cc																																																																														
ALK	0	MSKCC	GRCh37	2	29416374	29416374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	273	1008	2	ENST00000389048.3:c.4579C>T	p.Pro1527Ser	p.P1527S	ENST00000389048	NM_004304.4	1527	Cca/Tca																																																																														
SOS1	0	MSKCC	GRCh37	2	39262541	39262541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	76	780	0	ENST00000402219.2:c.965T>C	p.Leu322Pro	p.L322P	ENST00000402219	NM_005633.3	322	cTt/cCt																																																																														
TOP1	0	MSKCC	GRCh37	20	39721180	39721180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	198	816	0	ENST00000361337.2:c.686delC	p.Pro229HisfsTer19	p.P229Hfs*19	ENST00000361337	NM_003286.2	228	gCc/gc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026114	71026114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	175	600	0	ENST00000318789.4:c.1508G>T	p.Arg503Leu	p.R503L	ENST00000318789	NM_032682.5	503	cGa/cTa																																																																														
BCL6	0	MSKCC	GRCh37	3	187444543	187444543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	182	675	2	ENST00000232014.4:c.1684G>A	p.Ala562Thr	p.A562T	ENST00000232014	NM_001130845.1	562	Gcc/Acc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803419	1803419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	263	807	0	ENST00000260795.2:c.688G>A	p.Val230Met	p.V230M	ENST00000260795		230	Gtg/Atg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201760	66201760	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	41	869	0	ENST00000273854.3:c.2742C>A	p.Cys914Ter	p.C914*	ENST00000273854	NM_004439.5	914	tgC/tgA																																																																														
FAT1	0	MSKCC	GRCh37	4	187557846	187557848	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	149	621	0	ENST00000441802.2:c.3863_3865delCCT	p.Ser1288del	p.S1288del	ENST00000441802	NM_005245.3	1288	tCCTac/tac																																																																														
TERT	0	MSKCC	GRCh37	5	1294672	1294672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	66	246	4	ENST00000310581.5:c.329G>C	p.Gly110Ala	p.G110A	ENST00000310581	NM_198253.2	110	gGc/gCc																																																																														
MSH3	0	MSKCC	GRCh37	5	79974797	79974797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	106	837	1	ENST00000265081.6:c.1225G>A	p.Ala409Thr	p.A409T	ENST00000265081	NM_002439.4	409	Gct/Act																																																																														
RASA1	0	MSKCC	GRCh37	5	86564506	86564506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	124	419	0	ENST00000274376.6:c.238G>A	p.Ala80Thr	p.A80T	ENST00000274376	NM_002890.2	80	Gca/Aca																																																																														
RAD50	0	MSKCC	GRCh37	5	131911503	131911503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	110	677	0	ENST00000265335.6:c.248G>A	p.Arg83His	p.R83H	ENST00000265335		83	cGt/cAt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522424	176522424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	246	943	2	ENST00000292408.4:c.1613G>T	p.Gly538Val	p.G538V	ENST00000292408	NM_213647.1	538	gGt/gTt																																																																														
ABL1	0	MSKCC	GRCh37	9	133759377	133759377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	226	950	0	ENST00000318560.5:c.1700C>T	p.Ala567Val	p.A567V	ENST00000318560	NM_005157.4	567	gCc/gTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400074	139400074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	296	1147	0	ENST00000277541.6:c.4274G>A	p.Cys1425Tyr	p.C1425Y	ENST00000277541	NM_017617.3	1425	tGc/tAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139405141	139405141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	239	851	2	ENST00000277541.6:c.2704C>T	p.Arg902Cys	p.R902C	ENST00000277541	NM_017617.3	902	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0017998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	359	711	0	ENST00000269305.4:c.518T>G	p.Val173Gly	p.V173G	ENST00000269305	NM_001126112.2	173	gTg/gGg																																																																														
FUBP1	0	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	39	756	0	ENST00000370768.2:c.1288C>A	p.Arg430Ser	p.R430S	ENST00000370768	NM_003902.3	430	Cgt/Agt																																																																														
SMAD2	0	MSKCC	GRCh37	18	45372091	45372091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	40	1010	0	ENST00000262160.6:c.1078C>T	p.Pro360Ser	p.P360S	ENST00000262160	NM_005901.5	360	Ccc/Tcc																																																																														
KIT	0	MSKCC	GRCh37	4	55599333	55599333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	406	690	0	ENST00000288135.5:c.2459A>G	p.Asp820Gly	p.D820G	ENST00000288135	NM_000222.2	820	gAt/gGt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31016169	31016169	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	503	856	2	ENST00000375687.4:c.415delG	p.Glu139AsnfsTer29	p.E139Nfs*29	ENST00000375687	NM_015338.5	139	Gaa/aa																																																																														
KIT	0	MSKCC	GRCh37	4	55593607	55593610	+	protein_altering_variant	In_Frame_Del	DEL	AGGT	AGGT	G			P-0018001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	476	665	0	ENST00000288135.5:c.1673_1676delAGGTinsG	p.Lys558_Val559delinsSer	p.K558_V559delinsS	ENST00000288135	NM_000222.2	558	aAGGTt/aGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	175	729	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	94	457	2				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	339	1126	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	315	713	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	150	399	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740665	58740665	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	337	1102	0	ENST00000305921.3:c.1570C>T	p.Gln524Ter	p.Q524*	ENST00000305921	NM_003620.3	524	Caa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106393	27106393	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	192	822	0	ENST00000324856.7:c.6004delT	p.Ser2002ProfsTer13	p.S2002Pfs*13	ENST00000324856	NM_006015.4	2002	Tcc/cc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106988	27106992	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAC	AGGAC	-			P-0018003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	147	680	0	ENST00000324856.7:c.6601_6605delGACAG	p.Asp2201ProfsTer22	p.D2201Pfs*22	ENST00000324856	NM_006015.4	2200	gAGGAC/g																																																																														
TSC2	0	MSKCC	GRCh37	16	2129172	2129172	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	412	1176	0	ENST00000219476.3:c.3106T>C	p.Ser1036Pro	p.S1036P	ENST00000219476	NM_000548.3	1036	Tcc/Ccc																																																																														
SPEN	0	MSKCC	GRCh37	1	16259893	16259893	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	67	825	0	ENST00000375759.3:c.7158G>C	p.Gln2386His	p.Q2386H	ENST00000375759	NM_015001.2	2386	caG/caC																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097751	27097751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	55	820	3	ENST00000324856.7:c.3344del	p.Pro1115GlnfsTer46	p.P1115Qfs*46	ENST00000324856	NM_006015.4	1114	Ccc/cc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101198	27101198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	78	743	0	ENST00000324856.7:c.4480C>T	p.Gln1494Ter	p.Q1494*	ENST00000324856	NM_006015.4	1494	Caa/Taa																																																																														
CSDE1	0	MSKCC	GRCh37	1	115266569	115266569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	32	852	3	ENST00000438362.2:c.1946G>A	p.Arg649His	p.R649H	ENST00000438362	NM_001242891.1	649	cGc/cAc																																																																														
CSDE1	0	MSKCC	GRCh37	1	115275302	115275302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	62	881	0	ENST00000438362.2:c.1111C>T	p.Arg371Cys	p.R371C	ENST00000438362	NM_001242891.1	371	Cgt/Tgt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120459206	120459206	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	56	658	2	ENST00000256646.2:c.6139delC	p.Arg2047GlyfsTer21	p.R2047Gfs*21	ENST00000256646	NM_024408.3	2047	Cgg/gg																																																																														
DDR2	0	MSKCC	GRCh37	1	162724632	162724632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	35	486	0	ENST00000367921.3:c.404G>A	p.Arg135His	p.R135H	ENST00000367921	NM_006182.2	135	cGt/cAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89624251	89624251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	16	276	0	ENST00000371953.3:c.25G>C	p.Val9Leu	p.V9L	ENST00000371953	NM_000314.4	9	Gtt/Ctt																																																																														
PTEN	0	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	39	680	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741925	17741925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	112	332	1	ENST00000250003.3:c.596C>T	p.Ala199Val	p.A199V	ENST00000250003	NM_002478.4	199	gCg/gTg																																																																														
PGR	0	MSKCC	GRCh37	11	100996755	100996757	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	58	759	0	ENST00000325455.5:c.1770_1772delCTT	p.Phe591del	p.F591del	ENST00000325455	NM_001202474.3	590	ttCTTt/ttt																																																																														
PGR	0	MSKCC	GRCh37	11	100998838	100998838	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	86	927	0	ENST00000325455.5:c.964C>T	p.Gln322Ter	p.Q322*	ENST00000325455	NM_001202474.3	322	Cag/Tag																																																																														
RAD52	0	MSKCC	GRCh37	12	1025569	1025569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	139	845	0	ENST00000358495.3:c.806G>A	p.Arg269Gln	p.R269Q	ENST00000358495	NM_134424.2	269	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	65	891	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433883	49433883	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189888707		P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	78	1025	1	ENST00000301067.7:c.7670C>T	p.Pro2557Leu	p.P2557L	ENST00000301067	NM_003482.3	2557	cCg/cTg																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	61	867	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112398	115112398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	141	670	0	ENST00000257566.3:c.1342G>A	p.Gly448Ser	p.G448S	ENST00000257566	NM_016569.3	448	Ggc/Agc																																																																														
LATS2	0	MSKCC	GRCh37	13	21553861	21553861	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	94	836	2	ENST00000382592.4:c.2741delT	p.Leu914TrpfsTer10	p.L914Wfs*10	ENST00000382592	NM_014572.2	914	tTg/tg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972575	32972575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	38	815	0	ENST00000380152.3:c.9925G>A	p.Glu3309Lys	p.E3309K	ENST00000380152		3309	Gaa/Aaa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103506135	103506135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	30	668	1	ENST00000355739.4:c.293C>T	p.Ala98Val	p.A98V	ENST00000355739	NM_000123.3	98	gCg/gTg																																																																														
RAD51B	0	MSKCC	GRCh37	14	68934938	68934938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	27	645	1	ENST00000487270.1:c.1007C>T	p.Thr336Ile	p.T336I	ENST00000487270	NM_133509.3	336	aCc/aTc																																																																														
CTCF	0	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	42	805	1	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																														
CDH1	0	MSKCC	GRCh37	16	68863593	68863593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	106	871	0	ENST00000261769.5:c.2332G>A	p.Ala778Thr	p.A778T	ENST00000261769	NM_004360.3	778	Gct/Act																																																																														
TP53	0	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	60	691	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7579580	7579580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	45	696	1	ENST00000269305.4:c.107C>T	p.Pro36Leu	p.P36L	ENST00000269305	NM_001126112.2	36	cCg/cTg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16042434	16042434	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	72	899	1	ENST00000268712.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000268712	NM_006311.3	414	Cga/Tga																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39637978	39637978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	46	868	3	ENST00000262039.4:c.2395C>T	p.Arg799Cys	p.R799C	ENST00000262039	NM_002647.2	799	Cgt/Tgt																																																																														
TCF3	0	MSKCC	GRCh37	19	1622138	1622138	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	120	749	0	ENST00000344749.5:c.737delC	p.Pro246ArgfsTer38	p.P246Rfs*38	ENST00000344749	NM_001136139.2	246	cCg/cg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11094903	11094903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145867502		P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	75	743	1	ENST00000344626.4:c.76G>A	p.Ala26Thr	p.A26T	ENST00000344626	NM_003072.3	26	Gcc/Acc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273240	18273240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	54	736	4	ENST00000222254.8:c.1033C>T	p.Arg345Trp	p.R345W	ENST00000222254	NM_005027.3	345	Cgg/Tgg																																																																														
ERF	0	MSKCC	GRCh37	19	42753107	42753107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	109	653	0	ENST00000222329.4:c.1157G>A	p.Arg386His	p.R386H	ENST00000222329	NM_006494.2	386	cGc/cAc																																																																														
POLD1	0	MSKCC	GRCh37	19	50917081	50917081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	36	816	2	ENST00000440232.2:c.2333C>T	p.Ala778Val	p.A778V	ENST00000440232	NM_002691.3	778	gCc/gTc																																																																														
MSH6	0	MSKCC	GRCh37	2	48025913	48025913	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	30	559	0	ENST00000234420.5:c.792delA	p.Glu264AspfsTer15	p.E264Dfs*15	ENST00000234420	NM_000179.2	264	gAa/ga																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	43	712	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
CASP8	0	MSKCC	GRCh37	2	202150022	202150022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	61	677	0	ENST00000358485.4:c.1463T>C	p.Leu488Pro	p.L488P	ENST00000358485	NM_001080125.1	488	cTg/cCg																																																																														
IRS1	0	MSKCC	GRCh37	2	227661474	227661474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	32	594	0	ENST00000305123.5:c.1981G>A	p.Gly661Ser	p.G661S	ENST00000305123	NM_005544.2	661	Ggc/Agc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	37	456	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																														
SETD2	0	MSKCC	GRCh37	3	47125398	47125398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	13	553	0	ENST00000409792.3:c.5872G>A	p.Ala1958Thr	p.A1958T	ENST00000409792	NM_014159.6	1958	Gct/Act																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921339	178921339	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	24	608	0	ENST00000263967.3:c.821G>C	p.Arg274Thr	p.R274T	ENST00000263967	NM_006218.2	274	aGa/aCa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921373	178921373	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	37	792	0	ENST00000263967.3:c.855G>C	p.Leu285Phe	p.L285F	ENST00000263967	NM_006218.2	285	ttG/ttC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	42	648	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
BCL6	0	MSKCC	GRCh37	3	187446324	187446324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	75	529	1	ENST00000232014.4:c.1364C>T	p.Thr455Met	p.T455M	ENST00000232014	NM_001130845.1	455	aCg/aTg																																																																														
PDGFRA	5156	MSKCC	GRCh37	4	55155180	55155180	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs267600187		P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	52	630	0	ENST00000257290.5:c.2779G>A	p.Glu927Lys	p.E927K	ENST00000257290	NM_006206.4	927	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	28	672	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589619	67589620	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	55	634	0	ENST00000274335.5:c.1384_1385delGA	p.Glu462IlefsTer2	p.E462Ifs*2	ENST00000274335		461	cGA/c																																																																														
APC	324	MSKCC	GRCh37	5	112175166	112175166	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs371113837		P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	18	341	0	ENST00000257430.4:c.3875C>T	p.Thr1292Met	p.T1292M	ENST00000257430	NM_000038.5	1292	aCg/aTg																																																																														
FLT4	0	MSKCC	GRCh37	5	180038349	180038349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	79	577	2	ENST00000261937.6:c.3668G>A	p.Arg1223His	p.R1223H	ENST00000261937	NM_182925.4	1223	cGc/cAc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157502244	157502244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	71	713	1	ENST00000346085.5:c.3277G>A	p.Val1093Met	p.V1093M	ENST00000346085	NM_020732.3	1093	Gtg/Atg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738828	145738828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201883228		P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	118	926	1	ENST00000428558.2:c.2237C>T	p.Ala746Val	p.A746V	ENST00000428558	NM_004260.3	746	gCg/gTg																																																																														
SYK	0	MSKCC	GRCh37	9	93650071	93650071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	40	751	1	ENST00000375746.1:c.1622C>T	p.Pro541Leu	p.P541L	ENST00000375746	NM_001174167.1	541	cCg/cTg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98221945	98221945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	51	586	1	ENST00000331920.6:c.2824C>T	p.Arg942Trp	p.R942W	ENST00000331920	NM_000264.3	942	Cgg/Tgg																																																																														
TSC1	0	MSKCC	GRCh37	9	135771740	135771740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	52	946	1	ENST00000298552.3:c.3377G>A	p.Gly1126Asp	p.G1126D	ENST00000298552	NM_001162426.1	1126	gGt/gAt																																																																														
GATA1	0	MSKCC	GRCh37	X	48650778	48650778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	80	834	0	ENST00000376670.3:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000376670	NM_002049.3	216	cGg/cAg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53225997	53225997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	32	893	1	ENST00000375401.3:c.2852G>T	p.Arg951Leu	p.R951L	ENST00000375401	NM_004187.3	951	cGa/cTa																																																																														
AMER1	0	MSKCC	GRCh37	X	63410102	63410102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	51	722	1	ENST00000330258.3:c.3065G>A	p.Arg1022His	p.R1022H	ENST00000330258	NM_152424.3	1022	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	26	984	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	45	573	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	45	573	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	45	573	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	501	403	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	323	585	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
SDHAF2	0	MSKCC	GRCh37	11	61205157	61205157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144867876		P-0018008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	195	574	0	ENST00000301761.2:c.97C>T	p.Arg33Cys	p.R33C	ENST00000301761	NM_017841.2	33	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0018009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	97	477	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0018009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	74	366	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	66	224	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	29	181	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412638	63412638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	80	393	0	ENST00000330258.3:c.529C>T	p.Arg177Cys	p.R177C	ENST00000330258	NM_152424.3	177	Cgc/Tgc																																																																														
PTEN	0	MSKCC	GRCh37	10	89690802	89690802	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0018009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	137	307	0	ENST00000371953.3:c.210-1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
ARID1A	0	MSKCC	GRCh37	1	27100387	27100387	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0018009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	72	335	2	ENST00000324856.7:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000324856	NM_006015.4	1367	Cag/Tag																																																																														
RET	0	MSKCC	GRCh37	10	43609084	43609086	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0018009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	81	450	1	ENST00000355710.3:c.1846_1848delGAG	p.Glu616del	p.E616del	ENST00000355710	NM_020975.4	614	GAG/-																																																																														
PTEN	0	MSKCC	GRCh37	10	89653849	89653851	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-			P-0018009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	60	328	0	ENST00000371953.3:c.148_150delATT	p.Ile50del	p.I50del	ENST00000371953	NM_000314.4	49	aaTATt/aat																																																																														
SOX9	0	MSKCC	GRCh37	17	70118905	70118906	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	94	393	0	ENST00000245479.2:c.478dup	p.Arg160ProfsTer92	p.R160Pfs*92	ENST00000245479	NM_000346.3	159	-/C																																																																														
SOX9	0	MSKCC	GRCh37	17	70119928	70119929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	69	305	0	ENST00000245479.2:c.932dup	p.Gln312ProfsTer266	p.Q312Pfs*266	ENST00000245479	NM_000346.3	310	-/G																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	73	337	1				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	135	438	2	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
ABL1	0	MSKCC	GRCh37	9	133759686	133759686	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs61746126		P-0018010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	91	417	0	ENST00000318560.5:c.2009A>G	p.Asn670Ser	p.N670S	ENST00000318560	NM_005157.4	670	aAt/aGt																																																																														
FGFR1	0	MSKCC	GRCh37	8	38287238	38287238	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140382957		P-0018010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	186	577	3	ENST00000425967.3:c.419C>T	p.Ser140Leu	p.S140L	ENST00000425967	NM_001174067.1	140	tCg/tTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827689	72827689	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	78	402	1	ENST00000268489.5:c.8892C>A	p.Cys2964Ter	p.C2964*	ENST00000268489	NM_006885.3	2964	tgC/tgA																																																																														
SPOP	0	MSKCC	GRCh37	17	47696464	47696464	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	116	383	0	ENST00000347630.2:c.359A>T	p.Gln120Leu	p.Q120L	ENST00000347630	NM_001007230.1	120	cAa/cTa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89444989	89444989	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0018010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	119	454	0	ENST00000336596.2:c.1309C>G	p.Pro437Ala	p.P437A	ENST00000336596	NM_005233.5	437	Cca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	69	545	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0018012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	34	307	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0018012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	34	307	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	83	640	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0018012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	34	307	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	74	619	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	158	546	1	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																														
SLX4	0	MSKCC	GRCh37	16	3644591	3644591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	129	536	0	ENST00000294008.3:c.2023G>A	p.Gly675Arg	p.G675R	ENST00000294008	NM_032444.2	675	Ggg/Agg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781871	3781871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	150	580	0	ENST00000262367.5:c.4796G>A	p.Ser1599Asn	p.S1599N	ENST00000262367	NM_004380.2	1599	aGc/aAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974742	21974743	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	85	233	0	ENST00000304494.5:c.84dup	p.Arg29AlafsTer15	p.R29Afs*15	ENST00000304494	NM_000077.4	28	-/G																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974742	21974743	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	85	233	0	ENST00000304494.5:c.84dup	p.Arg29AlafsTer15	p.R29Afs*15	ENST00000304494	NM_000077.4	28	-/G																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101904887	101904888	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	69	414	0	ENST00000374994.4:c.878dup	p.Asn293LysfsTer40	p.N293Kfs*40	ENST00000374994	NM_004612.2	292	tta/ttAa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938552	44938553	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0018013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	108	317	0	ENST00000377967.4:c.3101_3102delAA	p.Lys1034IlefsTer18	p.K1034Ifs*18	ENST00000377967	NM_021140.2	1034	AAa/a																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	368	525	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	200	438	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																																																														
IGF2	0	MSKCC	GRCh37	11	2154363	2154363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	186	573	0	ENST00000434045.2:c.565C>G	p.Leu189Val	p.L189V	ENST00000434045	NM_001127598.1	189	Ctc/Gtc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15995347	15995347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	126	321	0	ENST00000268712.3:c.2846C>T	p.Pro949Leu	p.P949L	ENST00000268712	NM_006311.3	949	cCa/cTa																																																																														
STK11	0	MSKCC	GRCh37	19	1220448	1220448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	224	617	0	ENST00000326873.7:c.541A>T	p.Asn181Tyr	p.N181Y	ENST00000326873	NM_000455.4	181	Aac/Tac																																																																														
PBRM1	0	MSKCC	GRCh37	3	52597437	52597437	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	195	487	0	ENST00000394830.3:c.3873delT	p.Phe1291LeufsTer4	p.F1291Lfs*4	ENST00000394830	NM_018313.4	1291	ttT/tt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0018015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	136	482	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	380	672	1	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212392	36212392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	156	605	0	ENST00000222270.7:c.2143G>T	p.Val715Phe	p.V715F	ENST00000222270	NM_014727.1	715	Gtt/Ttt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266072	41266131	+	inframe_deletion	In_Frame_Del	DEL	TCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGC	TCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGC	-			P-0018015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	185	326	0	ENST00000349496.5:c.71_130delACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTC	p.His24_Ala43del	p.H24_A43del	ENST00000349496	NM_001904.3	23	agTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCt/agt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134884875	134884875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	110	429	0	ENST00000398015.3:c.1651G>A	p.Val551Met	p.V551M	ENST00000398015	NM_004441.4	551	Gtg/Atg																																																																														
STK40	0	MSKCC	GRCh37	1	36826863	36826863	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	174	619	0	ENST00000373129.3:c.71T>C	p.Ile24Thr	p.I24T	ENST00000373129	NM_032017.1	24	aTt/aCt																																																																														
IDH2	0	MSKCC	GRCh37	15	90631907	90631907	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	416	595	0	ENST00000330062.3:c.446G>C	p.Arg149Pro	p.R149P	ENST00000330062	NM_002168.2	149	cGg/cCg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873945	151873945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	474	450	0	ENST00000262189.6:c.8593G>A	p.Gly2865Arg	p.G2865R	ENST00000262189	NM_170606.2	2865	Gga/Aga																																																																														
MST1R	0	MSKCC	GRCh37	3	49924790	49924790	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	235	543	0	ENST00000296474.3:c.4153G>C	p.Gly1385Arg	p.G1385R	ENST00000296474	NM_002447.2	1385	Ggg/Cgg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971023	21971023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	107	296	0	ENST00000304494.5:c.335G>C	p.Arg112Pro	p.R112P	ENST00000304494	NM_000077.4	112	cGt/cCt																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971023	21971023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	107	296	0	ENST00000304494.5:c.335G>C	p.Arg112Pro	p.R112P	ENST00000304494	NM_000077.4	112	cGt/cCt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	87	265	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	187	561	0	ENST00000269305.4:c.377A>C	p.Tyr126Ser	p.Y126S	ENST00000269305	NM_001126112.2	126	tAc/tCc																																																																														
JAK1	0	MSKCC	GRCh37	1	65321308	65321308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	148	469	0	ENST00000342505.4:c.1532G>A	p.Gly511Asp	p.G511D	ENST00000342505	NM_002227.2	511	gGt/gAt																																																																														
NEGR1	0	MSKCC	GRCh37	1	72400776	72400776	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	68	231	0	ENST00000357731.5:c.395A>T	p.His132Leu	p.H132L	ENST00000357731	NM_173808.2	132	cAt/cTt																																																																														
DDR2	0	MSKCC	GRCh37	1	162724601	162724601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	128	377	0	ENST00000367921.3:c.373G>C	p.Asp125His	p.D125H	ENST00000367921	NM_006182.2	125	Gat/Cat																																																																														
BRCA2	0	MSKCC	GRCh37	13	32953643	32953643	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	60	391	1	ENST00000380152.3:c.8944A>T	p.Lys2982Ter	p.K2982*	ENST00000380152		2982	Aaa/Taa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346127	89346127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	31	100	0	ENST00000301030.4:c.6823G>T	p.Ala2275Ser	p.A2275S	ENST00000301030	NM_001256183.1	2275	Gcc/Tcc																																																																														
NF1	0	MSKCC	GRCh37	17	29654623	29654623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	52	335	0	ENST00000358273.4:c.5375G>C	p.Cys1792Ser	p.C1792S	ENST00000358273	NM_001042492.2	1792	tGc/tCc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39609343	39609343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	128	358	0	ENST00000262039.4:c.1645G>T	p.Val549Leu	p.V549L	ENST00000262039	NM_002647.2	549	Gta/Tta																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15299941	15299941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	140	416	0	ENST00000263388.2:c.1237G>T	p.Gly413Cys	p.G413C	ENST00000263388	NM_000435.2	413	Ggc/Tgc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25464457	25464457	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	124	389	0	ENST00000264709.3:c.2056delG	p.Asp686ThrfsTer19	p.D686Tfs*19	ENST00000264709	NM_175629.2	686	Gac/ac																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790003	40790003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	100	349	1	ENST00000373198.4:c.2728G>A	p.Glu910Lys	p.E910K	ENST00000373198	NM_133170.3	910	Gag/Aag																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664968	138664968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	86	323	2	ENST00000330315.3:c.597C>A	p.Phe199Leu	p.F199L	ENST00000330315	NM_023067.3	199	ttC/ttA																																																																														
ESR1	0	MSKCC	GRCh37	6	152332874	152332874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	77	336	0	ENST00000206249.3:c.1180C>G	p.Arg394Gly	p.R394G	ENST00000206249	NM_000125.3	394	Cgc/Ggc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509542	106509542	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	45	461	0	ENST00000359195.3:c.1536C>G	p.Asn512Lys	p.N512K	ENST00000359195	NM_002649.2	512	aaC/aaG																																																																														
KMT2C	0	MSKCC	GRCh37	7	151882675	151882675	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	122	325	0	ENST00000262189.6:c.5050A>T	p.Lys1684Ter	p.K1684*	ENST00000262189	NM_170606.2	1684	Aaa/Taa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8331692	8331692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	123	366	0	ENST00000356435.5:c.5424G>T	p.Trp1808Cys	p.W1808C	ENST00000356435		1808	tgG/tgT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	536	427	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138384011	138384011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	223	379	0	ENST00000289153.2:c.2539C>T	p.Arg847Cys	p.R847C	ENST00000289153	NM_006219.2	847	Cgc/Tgc																																																																														
SUFU	0	MSKCC	GRCh37	10	104377179	104377179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1239	127	554	0	ENST00000369902.3:c.1290G>C	p.Trp430Cys	p.W430C	ENST00000369902	NM_016169.3	430	tgG/tgC																																																																														
MGA	0	MSKCC	GRCh37	15	41989202	41989202	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	248	393	0	ENST00000219905.7:c.1994T>G	p.Phe665Cys	p.F665C	ENST00000219905	NM_001164273.1	665	tTt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7579894	7579894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	89	417	0	ENST00000269305.4:c.19G>A	p.Asp7Asn	p.D7N	ENST00000269305	NM_001126112.2	7	Gat/Aat																																																																														
SPOP	0	MSKCC	GRCh37	17	47688761	47688761	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1157	212	342	0	ENST00000347630.2:c.539A>C	p.Lys180Thr	p.K180T	ENST00000347630	NM_001007230.1	180	aAg/aCg																																																																														
APC	0	MSKCC	GRCh37	5	112175163	112175163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	81	215	0	ENST00000257430.4:c.3872A>G	p.Gln1291Arg	p.Q1291R	ENST00000257430	NM_000038.5	1291	cAg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	460	434	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910714	32910797	+	inframe_deletion	In_Frame_Del	DEL	TACAACATTCAAAAGTGGAATACAGTGATACTGACTTTCAATCCCAGAAAAGTCTTTTATATGATCATGAAAATGCCAGCACTC	TACAACATTCAAAAGTGGAATACAGTGATACTGACTTTCAATCCCAGAAAAGTCTTTTATATGATCATGAAAATGCCAGCACTC	-			P-0018024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	210	588	0	ENST00000380152.3:c.2223_2306delACAACATTCAAAAGTGGAATACAGTGATACTGACTTTCAATCCCAGAAAAGTCTTTTATATGATCATGAAAATGCCAGCACTCT	p.Gln742_Leu769del	p.Q742_L769del	ENST00000380152		741	gTACAACATTCAAAAGTGGAATACAGTGATACTGACTTTCAATCCCAGAAAAGTCTTTTATATGATCATGAAAATGCCAGCACTCtt/gtt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103510754	103510754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	196	526	0	ENST00000355739.4:c.658G>A	p.Glu220Lys	p.E220K	ENST00000355739	NM_000123.3	220	Gaa/Aaa																																																																														
MGA	0	MSKCC	GRCh37	15	42026786	42026786	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	435	423	0	ENST00000219905.7:c.3911delT	p.Leu1304TyrfsTer32	p.L1304Yfs*32	ENST00000219905	NM_001164273.1	1304	Tta/ta																																																																														
RPTOR	0	MSKCC	GRCh37	17	78727905	78727905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	619	503	1	ENST00000306801.3:c.750G>T	p.Glu250Asp	p.E250D	ENST00000306801	NM_020761.2	250	gaG/gaT																																																																														
GATA2	0	MSKCC	GRCh37	3	128205172	128205172	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	149	386	0	ENST00000341105.2:c.269T>G	p.Leu90Trp	p.L90W	ENST00000341105	NM_032638.4	90	tTg/tGg																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032251	26032251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	91	189	0	ENST00000244661.2:c.38G>T	p.Gly13Val	p.G13V	ENST00000244661	NM_003537.3	13	gGc/gTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878428	151878428	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	409	491	2	ENST00000262189.6:c.6517C>G	p.Pro2173Ala	p.P2173A	ENST00000262189	NM_170606.2	2173	Cca/Gca																																																																														
FGFR1	0	MSKCC	GRCh37	8	38287306	38287306	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	272	515	0	ENST00000425967.3:c.351G>C	p.Glu117Asp	p.E117D	ENST00000425967	NM_001174067.1	117	gaG/gaC																																																																														
RAD21	0	MSKCC	GRCh37	8	117866488	117866488	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1574	130	349	0	ENST00000297338.2:c.1157T>G	p.Leu386Arg	p.L386R	ENST00000297338	NM_006265.2	386	cTg/cGg																																																																														
TSC1	0	MSKCC	GRCh37	9	135776138	135776138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	223	447	0	ENST00000298552.3:c.2589G>T	p.Leu863Phe	p.L863F	ENST00000298552	NM_001162426.1	863	ttG/ttT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0018028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	180	330	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	205	394	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
MTOR	0	MSKCC	GRCh37	1	11199717	11199717	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0018028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	86	333	0	ENST00000361445.4:c.4873-2A>C		p.X1625_splice	ENST00000361445	NM_004958.3	1625																																																																															
ELF3	0	MSKCC	GRCh37	1	201981170	201981170	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	287	550	0	ENST00000359651.3:c.249delC	p.Asn83LysfsTer72	p.N83Kfs*72	ENST00000359651		83	aaC/aa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426520	49426520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	245	521	0	ENST00000301067.7:c.11968C>T	p.Gln3990Ter	p.Q3990*	ENST00000301067	NM_003482.3	3990	Caa/Taa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433834	49433837	+	frameshift_variant	Frame_Shift_Del	DEL	GCCC	GCCC	-			P-0018028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	252	590	0	ENST00000301067.7:c.7716_7719delGGGC	p.Gly2573SerfsTer9	p.G2573Sfs*9	ENST00000301067	NM_003482.3	2572	ttGGGC/tt																																																																														
TRAF7	0	MSKCC	GRCh37	16	2221310	2221310	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	250	503	0	ENST00000326181.6:c.394C>G	p.Gln132Glu	p.Q132E	ENST00000326181	NM_032271.2	132	Cag/Gag																																																																														
UPF1	0	MSKCC	GRCh37	19	18976487	18976487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	284	561	0	ENST00000262803.5:c.3137C>T	p.Ser1046Leu	p.S1046L	ENST00000262803	NM_002911.3	1046	tCa/tTa																																																																														
UPF1	0	MSKCC	GRCh37	19	18976499	18976499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	287	551	0	ENST00000262803.5:c.3149C>T	p.Ser1050Phe	p.S1050F	ENST00000262803	NM_002911.3	1050	tCt/tTt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480460	89480460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	85	228	0	ENST00000336596.2:c.2297G>A	p.Gly766Glu	p.G766E	ENST00000336596	NM_005233.5	766	gGa/gAa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0018029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	197	395	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925711	114925711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	35	348	0	ENST00000543371.1:c.1789G>A	p.Val597Ile	p.V597I	ENST00000543371	NM_001198531.1	597	Gtc/Atc																																																																														
SDHAF2	0	MSKCC	GRCh37	11	61205316	61205321	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CTTAGG	CTTAGG	-			P-0018029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	66	343	0	ENST00000301761.2:c.256_260+1delCTTAGG		p.X86_splice	ENST00000301761	NM_017841.2	86																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	610	444	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	437	291	1	ENST00000275493.2:c.2500G>T	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ttg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176176022	176176023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	81	398	0	ENST00000367669.3:c.92dupT	p.Leu31PhefsTer47	p.L31Ffs*47	ENST00000367669	NM_022457.5	31	tta/ttTa																																																																														
ATM	0	MSKCC	GRCh37	11	108121466	108121466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	47	207	0	ENST00000278616.4:c.1274C>T	p.Ala425Val	p.A425V	ENST00000278616	NM_000051.3	425	gCa/gTa																																																																														
GPS2	0	MSKCC	GRCh37	17	7217443	7217450	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTGGTA	TGCTGGTA	-			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	117	320	0	ENST00000380728.2:c.346_353delTACCAGCA	p.Tyr116GlufsTer30	p.Y116Efs*30	ENST00000380728		116	TACCAGCAg/g																																																																														
TP53	0	MSKCC	GRCh37	17	7576849	7576872	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTACCTGAAGGGTGAAATATTCTC	GTACCTGAAGGGTGAAATATTCTC	TT			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	78	394	3	ENST00000269305.4:c.974_993+4delGAGAATATTTCACCCTTCAGGTACinsAA		p.X325_splice	ENST00000269305	NM_001126112.2	325																																																																															
NF1	0	MSKCC	GRCh37	17	29556347	29556347	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	271	383	0	ENST00000358273.4:c.2714A>C	p.Asn905Thr	p.N905T	ENST00000358273	NM_001042492.2	905	aAc/aCc																																																																														
NF1	0	MSKCC	GRCh37	17	29664430	29664430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	130	368	0	ENST00000358273.4:c.6472T>A	p.Leu2158Ile	p.L2158I	ENST00000358273	NM_001042492.2	2158	Tta/Ata																																																																														
ERCC3	0	MSKCC	GRCh37	2	128050254	128050254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	81	363	1	ENST00000285398.2:c.403G>A	p.Asp135Asn	p.D135N	ENST00000285398	NM_000122.1	135	Gac/Aac																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259262	89259262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	58	274	0	ENST00000336596.2:c.406C>G	p.Arg136Gly	p.R136G	ENST00000336596	NM_005233.5	136	Cga/Gga																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138417849	138417849	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	251	497	0	ENST00000289153.2:c.1670T>C	p.Leu557Pro	p.L557P	ENST00000289153	NM_006219.2	557	cTt/cCt																																																																														
MDC1	0	MSKCC	GRCh37	6	30673530	30673530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	94	497	0	ENST00000376406.3:c.3430C>T	p.Gln1144Ter	p.Q1144*	ENST00000376406	NM_014641.2	1144	Cag/Tag																																																																														
LATS1	0	MSKCC	GRCh37	6	150023257	150023257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	184	293	0	ENST00000253339.5:c.6G>C	p.Lys2Asn	p.K2N	ENST00000253339		2	aaG/aaC																																																																														
PTPRD	0	MSKCC	GRCh37	9	8338979	8338979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	385	423	0	ENST00000356435.5:c.5322G>T	p.Met1774Ile	p.M1774I	ENST00000356435		1774	atG/atT																																																																														
TP53	0	MSKCC	GRCh37	17	7577084	7577084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	538	619	1	ENST00000269305.4:c.854A>T	p.Glu285Val	p.E285V	ENST00000269305	NM_001126112.2	285	gAg/gTg																																																																														
EIF4E	0	MSKCC	GRCh37	4	99823108	99823108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	90	301	0	ENST00000280892.6:c.104C>T	p.Pro35Leu	p.P35L	ENST00000280892	NM_001130678.1	35	cCg/cTg																																																																														
TP63	0	MSKCC	GRCh37	3	189582169	189582169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	148	392	1	ENST00000264731.3:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000264731	NM_003722.4	243	cGg/cAg																																																																														
RB1	0	MSKCC	GRCh37	13	48923137	48923137	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	94	356	0	ENST00000267163.4:c.585G>C	p.Trp195Cys	p.W195C	ENST00000267163	NM_000321.2	195	tgG/tgC																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029375	14029375	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	125	328	0	ENST00000311895.7:c.1586T>A	p.Ile529Asn	p.I529N	ENST00000311895	NM_005236.2	529	aTt/aAt																																																																														
NF1	0	MSKCC	GRCh37	17	29657409	29657409	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	394	583	1	ENST00000358273.4:c.5706delC	p.Asn1903ThrfsTer22	p.N1903Tfs*22	ENST00000358273	NM_001042492.2	1902	gCc/gc																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805780	46805780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	163	405	0	ENST00000290295.7:c.176C>G	p.Pro59Arg	p.P59R	ENST00000290295	NM_006361.5	59	cCg/cGg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222016	2222016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	191	511	0	ENST00000398665.3:c.2848G>C	p.Ala950Pro	p.A950P	ENST00000398665	NM_032482.2	950	Gcg/Ccg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152061	11152061	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	205	441	1	ENST00000344626.4:c.4249A>T	p.Ser1417Cys	p.S1417C	ENST00000344626	NM_003072.3	1417	Agc/Tgc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467132	25467132	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	165	470	0	ENST00000264709.3:c.1743G>A	p.Trp581Ter	p.W581*	ENST00000264709	NM_175629.2	581	tgG/tgA																																																																														
INPP4B	0	MSKCC	GRCh37	4	143003334	143003334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	470	455	0	ENST00000262992.4:c.2492G>T	p.Cys831Phe	p.C831F	ENST00000262992	NM_001101669.1	831	tGc/tTc																																																																														
IL7R	0	MSKCC	GRCh37	5	35871231	35871231	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	233	401	0	ENST00000303115.3:c.453T>A	p.Asn151Lys	p.N151K	ENST00000303115	NM_002185.3	151	aaT/aaA																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250820	26250821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCGTGCGTGCC			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	61	135	0	ENST00000446824.2:c.3_13dupGGCACGCACGA	p.Lys5ArgfsTer36	p.K5Rfs*36	ENST00000446824	NM_021018.2	5	aag/aGGCACGCACGAag																																																																														
INHBA	0	MSKCC	GRCh37	7	41729756	41729756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	201	274	1	ENST00000242208.4:c.773G>T	p.Gly258Val	p.G258V	ENST00000242208	NM_002192.2	258	gGc/gTc																																																																														
SMO	0	MSKCC	GRCh37	7	128846021	128846021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	371	454	0	ENST00000249373.3:c.951C>G	p.Ile317Met	p.I317M	ENST00000249373	NM_005631.4	317	atC/atG																																																																														
KMT2C	0	MSKCC	GRCh37	7	151848043	151848043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	133	375	0	ENST00000262189.6:c.12716G>A	p.Ser4239Asn	p.S4239N	ENST00000262189	NM_170606.2	4239	aGt/aAt																																																																														
RBM10	0	MSKCC	GRCh37	X	47038760	47038760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	181	265	0	ENST00000329236.7:c.536delA	p.Gln179ArgfsTer10	p.Q179Rfs*10	ENST00000329236	NM_001204466.1	179	cAg/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	60	880	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	31	521	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																														
AR	0	MSKCC	GRCh37	X	66766357	66766395	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	21	183	0	ENST00000374690.3:c.1382_1420delGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG	p.Gly461_Gly473del	p.G461_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																														
PRKCI	0	MSKCC	GRCh37	3	170013719	170013719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	40	735	1	ENST00000295797.4:c.1438C>T	p.Arg480Cys	p.R480C	ENST00000295797	NM_002740.5	480	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27024010	27024016	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCTC	GCCGCTC	-			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	10	156	0	ENST00000324856.7:c.1119_1125delGCTCGCC	p.Leu374GlyfsTer15	p.L374Gfs*15	ENST00000324856	NM_006015.4	372	caGCCGCTC/ca																																																																														
ETV6	0	MSKCC	GRCh37	12	12022859	12022959	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCCCCGCCTGAAGAGCACGCCATGCCCATTGGGAGAATAGCAGGTGAGTGAGTTCCCCTCTCGCCGCTCCAGCATCATGGGGACCTGACAAAGTCCCAC	TCTCCCCGCCTGAAGAGCACGCCATGCCCATTGGGAGAATAGCAGGTGAGTGAGTTCCCCTCTCGCCGCTCCAGCATCATGGGGACCTGACAAAGTCCCAC	-			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	44	777	1	ENST00000396373.4:c.972_1009+63delGCCTGAAGAGCACGCCATGCCCATTGGGAGAATAGCAGGTGAGTGAGTTCCCCTCTCGCCGCTCCAGCATCATGGGGACCTGACAAAGTCCCACTCTCCCC		p.X324_splice	ENST00000396373	NM_001987.4	324																																																																															
NCOR1	0	MSKCC	GRCh37	17	15950385	15950386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	36	820	0	ENST00000268712.3:c.6557_6558dup	p.Ser2187GlyfsTer3	p.S2187Gfs*3	ENST00000268712	NM_006311.3	2186	-/GG																																																																														
SRC	0	MSKCC	GRCh37	20	36031215	36031215	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	27	755	0	ENST00000358208.4:c.1334A>T	p.Lys445Met	p.K445M	ENST00000358208		445	aAg/aTg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729874	30729874	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	27	428	0	ENST00000359013.4:c.1472-2A>C		p.X491_splice	ENST00000359013	NM_001024847.2	491																																																																															
RBM10	0	MSKCC	GRCh37	X	47045136	47045136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	30	812	0	ENST00000329236.7:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000329236	NM_001204466.1	715	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67645977	67645977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	53	933	0	ENST00000264010.4:c.905C>T	p.Ala302Val	p.A302V	ENST00000264010	NM_006565.3	302	gCa/gTa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584602	48584602	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	126	816	0	ENST00000342988.3:c.775A>T	p.Thr259Ser	p.T259S	ENST00000342988	NM_005359.5	259	Act/Tct																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	166	699	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
XPO1	0	MSKCC	GRCh37	2	61712974	61712974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	195	926	1	ENST00000401558.2:c.2437G>A	p.Gly813Arg	p.G813R	ENST00000401558	NM_003400.3	813	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	76	550	0				ENST00000310581	NM_198253.2																																																																																
HRAS	0	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	201	673	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt																																																																														
RNF43	0	MSKCC	GRCh37	17	56436127	56436127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138844366		P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	123	822	0	ENST00000407977.2:c.1010G>A	p.Arg337Gln	p.R337Q	ENST00000407977		337	cGa/cAa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812340	212812340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	80	496	1	ENST00000342788.4:c.236C>T	p.Ser79Phe	p.S79F	ENST00000342788	NM_005235.2	79	tCt/tTt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123247617	123247617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	130	709	0	ENST00000358487.5:c.1874G>A	p.Arg625Gln	p.R625Q	ENST00000358487	NM_000141.4	625	cGa/cAa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830184	72830184	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	74	437	0	ENST00000268489.5:c.6397C>T	p.Gln2133Ter	p.Q2133*	ENST00000268489	NM_006885.3	2133	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89717711	89717712	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	115	751	1	ENST00000371953.3:c.736_737delCCinsTT	p.Pro246Leu	p.P246L	ENST00000371953	NM_000314.4	246	CCg/TTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71939869	71939869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	178	929	0	ENST00000298229.2:c.496C>T	p.Pro166Ser	p.P166S	ENST00000298229	NM_001567.3	166	Ccc/Tcc																																																																														
ATM	0	MSKCC	GRCh37	11	108175561	108175561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	132	726	0	ENST00000278616.4:c.5656C>T	p.Pro1886Ser	p.P1886S	ENST00000278616	NM_000051.3	1886	Cct/Tct																																																																														
LATS2	0	MSKCC	GRCh37	13	21562501	21562501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	14	62	0	ENST00000382592.4:c.1418C>T	p.Pro473Leu	p.P473L	ENST00000382592	NM_014572.2	473	cCc/cTc																																																																														
TSHR	0	MSKCC	GRCh37	14	81609954	81609954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	61	438	0	ENST00000298171.2:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000298171	NM_000369.2	518	Gag/Aag																																																																														
NTRK3	0	MSKCC	GRCh37	15	88423623	88423623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	103	628	0	ENST00000360948.2:c.2212C>T	p.Pro738Ser	p.P738S	ENST00000360948	NM_001012338.2	738	Cct/Tct																																																																														
STAT5B	0	MSKCC	GRCh37	17	40379600	40379600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	182	936	0	ENST00000293328.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000293328	NM_012448.3	78	Gaa/Aaa																																																																														
CIC	0	MSKCC	GRCh37	19	42796256	42796256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	122	772	1	ENST00000575354.2:c.2905G>A	p.Val969Met	p.V969M	ENST00000575354	NM_015125.3	969	Gtg/Atg																																																																														
ALK	0	MSKCC	GRCh37	2	29754971	29754971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	101	629	0	ENST00000389048.3:c.964C>T	p.Leu322Phe	p.L322F	ENST00000389048	NM_004304.4	322	Ctt/Ttt																																																																														
CXCR4	0	MSKCC	GRCh37	2	136872594	136872594	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	93	605	0	ENST00000241393.3:c.904T>C	p.Tyr302His	p.Y302H	ENST00000241393	NM_003467.2	302	Tat/Cat																																																																														
INHA	0	MSKCC	GRCh37	2	220439905	220439905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	126	984	2	ENST00000243786.2:c.758C>T	p.Pro253Leu	p.P253L	ENST00000243786	NM_002191.3	253	cCg/cTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9547028	9547028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	34	267	0	ENST00000353224.5:c.994G>A	p.Asp332Asn	p.D332N	ENST00000353224	NM_177990.2	332	Gat/Aat																																																																														
PTPRT	0	MSKCC	GRCh37	20	41076903	41076903	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	140	759	1	ENST00000373198.4:c.1517G>A	p.Trp506Ter	p.W506*	ENST00000373198	NM_133170.3	506	tGg/tAg																																																																														
MST1R	0	MSKCC	GRCh37	3	49928673	49928673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	148	890	1	ENST00000296474.3:c.3601G>A	p.Glu1201Lys	p.E1201K	ENST00000296474	NM_002447.2	1201	Gag/Aag																																																																														
RASA1	0	MSKCC	GRCh37	5	86564311	86564311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	48	437	0	ENST00000274376.6:c.43A>T	p.Thr15Ser	p.T15S	ENST00000274376	NM_002890.2	15	Aca/Tca																																																																														
APC	0	MSKCC	GRCh37	5	112176095	112176095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	158	852	1	ENST00000257430.4:c.4804C>T	p.Pro1602Ser	p.P1602S	ENST00000257430	NM_000038.5	1602	Cct/Tct																																																																														
FLT4	0	MSKCC	GRCh37	5	180039534	180039534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	155	977	0	ENST00000261937.6:c.3509G>A	p.Gly1170Glu	p.G1170E	ENST00000261937	NM_182925.4	1170	gGg/gAg																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271395	26271395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	82	565	1	ENST00000305910.3:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000305910	NM_003534.2	73	cGa/cAa																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839775	27839775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	111	677	0	ENST00000328488.2:c.319G>A	p.Asp107Asn	p.D107N	ENST00000328488	NM_003533.2	107	Gat/Aat																																																																														
MDC1	0	MSKCC	GRCh37	6	30671558	30671558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	136	913	0	ENST00000376406.3:c.5402C>T	p.Pro1801Leu	p.P1801L	ENST00000376406	NM_014641.2	1801	cCg/cTg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188886	32188887	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	104	756	2	ENST00000375023.3:c.667_668delCCinsTT	p.Pro223Phe	p.P223F	ENST00000375023	NM_004557.3	223	CCt/TTt																																																																														
EPHA7	0	MSKCC	GRCh37	6	93964483	93964483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	107	718	1	ENST00000369303.4:c.2414C>T	p.Pro805Leu	p.P805L	ENST00000369303	NM_004440.3	805	cCc/cTc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50444260	50444260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	69	431	0	ENST00000331340.3:c.190G>A	p.Asp64Asn	p.D64N	ENST00000331340	NM_006060.4	64	Gat/Aat																																																																														
EGFR	0	MSKCC	GRCh37	7	55211148	55211148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	147	777	0	ENST00000275493.2:c.391G>A	p.Gly131Arg	p.G131R	ENST00000275493	NM_005228.3	131	Gga/Aga																																																																														
BRAF	0	MSKCC	GRCh37	7	140477853	140477853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	136	787	0	ENST00000288602.6:c.1455G>T	p.Leu485Phe	p.L485F	ENST00000288602	NM_004333.4	485	ttG/ttT																																																																														
PREX2	0	MSKCC	GRCh37	8	69031678	69031678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	110	728	1	ENST00000288368.4:c.3433C>T	p.Pro1145Ser	p.P1145S	ENST00000288368	NM_024870.2	1145	Ccc/Tcc																																																																														
RXRA	0	MSKCC	GRCh37	9	137293511	137293511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	156	1007	1	ENST00000481739.1:c.62C>T	p.Ser21Phe	p.S21F	ENST00000481739	NM_002957.4	21	tCc/tTc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53246444	53246444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	132	772	0	ENST00000375401.3:c.538C>A	p.Pro180Thr	p.P180T	ENST00000375401	NM_004187.3	180	Cca/Aca																																																																														
MTOR	0	MSKCC	GRCh37	1	11188932	11188932	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	160	940	0	ENST00000361445.4:c.5791C>T	p.Gln1931Ter	p.Q1931*	ENST00000361445	NM_004958.3	1931	Cag/Tag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72984723	72984723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	171	782	0	ENST00000268489.5:c.2861C>T	p.Thr954Met	p.T954M	ENST00000268489	NM_006885.3	954	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577523	7577523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	204	730	0	ENST00000269305.4:c.758C>T	p.Thr253Ile	p.T253I	ENST00000269305	NM_001126112.2	253	aCc/aTc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530091	212530091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	152	592	4	ENST00000342788.4:c.1828C>A	p.Pro610Thr	p.P610T	ENST00000342788	NM_005235.2	610	Cca/Aca																																																																														
FAT1	0	MSKCC	GRCh37	4	187549384	187549409	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAACGGCTGCCGATTCATAAACCC	GCCAACGGCTGCCGATTCATAAACCC	-			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	139	955	0	ENST00000441802.2:c.4709_4734delGGGTTTATGAATCGGCAGCCGTTGGC	p.Arg1570LeufsTer18	p.R1570Lfs*18	ENST00000441802	NM_005245.3	1570	cGGGTTTATGAATCGGCAGCCGTTGGC/c																																																																														
IL7R	0	MSKCC	GRCh37	5	35873595	35873595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	85	506	0	ENST00000303115.3:c.551C>A	p.Ser184Tyr	p.S184Y	ENST00000303115	NM_002185.3	184	tCc/tAc																																																																														
PREX2	0	MSKCC	GRCh37	8	69046172	69046440	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTTTCACATGCGTGAGTTTAGTGAAAAGATGAAATGCTAGTGAATGTAGATGCTGAACGCATTGGTTTTCACCATCTGCAACATTTTTCGAAGCATTCTCTATGTTCTCTTTGATCACAGATAGTGAGACACAGCTCCGTAGAGACATGGTTTTCTGCCAGACTCTTGTGGCCACTGTCTGTGCCTTCTCTGAGCAGCTCATGGCGGCCTTGAACCAGATGTTTGACAACAGCAAGGAAAATGAGATGGAAACTTGGGAAGCCAGCA	ATTTTTCACATGCGTGAGTTTAGTGAAAAGATGAAATGCTAGTGAATGTAGATGCTGAACGCATTGGTTTTCACCATCTGCAACATTTTTCGAAGCATTCTCTATGTTCTCTTTGATCACAGATAGTGAGACACAGCTCCGTAGAGACATGGTTTTCTGCCAGACTCTTGTGGCCACTGTCTGTGCCTTCTCTGAGCAGCTCATGGCGGCCTTGAACCAGATGTTTGACAACAGCAAGGAAAATGAGATGGAAACTTGGGAAGCCAGCA	-			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	47	55	0	ENST00000288368.4:c.3767-122_3913delATTTTTCACATGCGTGAGTTTAGTGAAAAGATGAAATGCTAGTGAATGTAGATGCTGAACGCATTGGTTTTCACCATCTGCAACATTTTTCGAAGCATTCTCTATGTTCTCTTTGATCACAGATAGTGAGACACAGCTCCGTAGAGACATGGTTTTCTGCCAGACTCTTGTGGCCACTGTCTGTGCCTTCTCTGAGCAGCTCATGGCGGCCTTGAACCAGATGTTTGACAACAGCAAGGAAAATGAGATGGAAACTTGGGAAGCCAGCA		p.X1256_splice	ENST00000288368	NM_024870.2	1256																																																																															
CDKN2A	0	MSKCC	GRCh37	9	21974679	21974679	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	135	690	1	ENST00000304494.5:c.148C>A	p.Gln50Lys	p.Q50K	ENST00000304494	NM_000077.4	50	Cag/Aag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974679	21974679	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	135	690	1	ENST00000304494.5:c.148C>A	p.Gln50Lys	p.Q50K	ENST00000304494	NM_000077.4	50	Cag/Aag																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21994285	21994285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	151	786	1	ENST00000361570.3:c.169G>T	p.Gly57Cys	p.G57C	ENST00000361570	NM_058195.3	57	Ggc/Tgc																																																																														
CENPA	0	MSKCC	GRCh37	2	27015052	27015052	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	37	713	1	ENST00000335756.4:c.154C>T	p.Arg52Ter	p.R52*	ENST00000335756	NM_001809.3	52	Cga/Tga																																																																														
STK11	0	MSKCC	GRCh37	19	1220493	1220493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	74	794	1	ENST00000326873.7:c.586G>T	p.Gly196Cys	p.G196C	ENST00000326873	NM_000455.4	196	Ggc/Tgc																																																																														
TBX3	0	MSKCC	GRCh37	12	115117448	115117448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	47	587	1	ENST00000257566.3:c.726G>T	p.Leu242Phe	p.L242F	ENST00000257566	NM_016569.3	242	ttG/ttT																																																																														
FLT1	0	MSKCC	GRCh37	13	28891720	28891720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	67	662	1	ENST00000282397.4:c.3301C>A	p.Pro1101Thr	p.P1101T	ENST00000282397	NM_002019.4	1101	Cca/Aca																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348143	89348143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	35	845	1	ENST00000301030.4:c.4807G>A	p.Glu1603Lys	p.E1603K	ENST00000301030	NM_001256183.1	1603	Gag/Aag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356356	66356356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	62	711	0	ENST00000273854.3:c.1141G>T	p.Ala381Ser	p.A381S	ENST00000273854	NM_004439.5	381	Gct/Tct																																																																														
CARD11	0	MSKCC	GRCh37	7	2951832	2951832	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	234	822	0	ENST00000396946.4:c.3118G>T	p.Ala1040Ser	p.A1040S	ENST00000396946	NM_032415.4	1040	Gcc/Tcc																																																																														
BCOR	0	MSKCC	GRCh37	X	39933376	39933376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	41	776	2	ENST00000378444.4:c.1223G>T	p.Gly408Val	p.G408V	ENST00000378444	NM_001123385.1	408	gGg/gTg																																																																														
AR	0	MSKCC	GRCh37	X	66766410	66766410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	11	231	0	ENST00000374690.3:c.1422G>T	p.Glu474Asp	p.E474D	ENST00000374690	NM_000044.3	474	gaG/gaT																																																																														
BRAF	0	MSKCC	GRCh37	7	140624467	140624467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	14	246	1	ENST00000288602.6:c.37G>A	p.Glu13Lys	p.E13K	ENST00000288602	NM_004333.4	13	Gag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	257	295	0	ENST00000375023.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000375023	NM_004557.3	1836	Gag/Aag																																																																														
RIT1	0	MSKCC	GRCh37	1	155874287	155874287	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	181	387	0	ENST00000368323.3:c.244T>A	p.Phe82Ile	p.F82I	ENST00000368323	NM_006912.5	82	Ttt/Att																																																																														
RB1	0	MSKCC	GRCh37	13	49027149	49027150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0018049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	330	420	0	ENST00000267163.4:c.1716_1717insTA	p.Ile573Ter	p.I573*	ENST00000267163	NM_000321.2	572	-/TA																																																																														
CREBBP	0	MSKCC	GRCh37	16	3819225	3819225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	170	410	0	ENST00000262367.5:c.3010G>C	p.Glu1004Gln	p.E1004Q	ENST00000262367	NM_004380.2	1004	Gag/Cag																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259192	36259192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	418	527	0	ENST00000300305.3:c.299C>G	p.Ser100Cys	p.S100C	ENST00000300305		100	tCc/tGc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	147	417	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	131	355	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	265	345	1	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																														
MGA	0	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	132	349	1	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																																																														
POLD1	0	MSKCC	GRCh37	19	50906330	50906330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	39	321	0	ENST00000440232.2:c.991C>T	p.Arg331Trp	p.R331W	ENST00000440232	NM_002691.3	331	Cgg/Tgg																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	49	712	0	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	127	475	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458718	120458766	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCTGCATTTCATGAAGGTTAGAAAAAGATAGTGCATGCTGGGCATGG	AGGCTGCATTTCATGAAGGTTAGAAAAAGATAGTGCATGCTGGGCATGG	-			P-0018053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	104	333	0	ENST00000256646.2:c.6579_6627delCCATGCCCAGCATGCACTATCTTTTTCTAACCTTCATGAAATGCAGCCT	p.His2194TrpfsTer12	p.H2194Wfs*12	ENST00000256646	NM_024408.3	2193	gtCCATGCCCAGCATGCACTATCTTTTTCTAACCTTCATGAAATGCAGCCT/gt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778218	3778231	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGCCCCATCTG	GGCTGCCCCATCTG	-			P-0018053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	103	459	0	ENST00000262367.5:c.6817_6830delCAGATGGGGCAGCC	p.Gln2273GlyfsTer63	p.Q2273Gfs*63	ENST00000262367	NM_004380.2	2273	CAGATGGGGCAGCCg/g																																																																														
CHEK2	0	MSKCC	GRCh37	22	29130469	29130469	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	255	481	0	ENST00000328354.6:c.241G>T	p.Glu81Ter	p.E81*	ENST00000328354	NM_007194.3	81	Gag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151927360	151927360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	11	76	0	ENST00000262189.6:c.2816C>G	p.Ser939Cys	p.S939C	ENST00000262189	NM_170606.2	939	tCt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	551	471	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
RAD52	0	MSKCC	GRCh37	12	1039264	1039264	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1262	94	553	0	ENST00000358495.3:c.233T>A	p.Met78Lys	p.M78K	ENST00000358495	NM_134424.2	78	aTg/aAg																																																																														
RB1	0	MSKCC	GRCh37	13	48955417	48955418	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0018058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	563	340	0	ENST00000267163.4:c.1534_1535delTT	p.Leu512ValfsTer10	p.L512Vfs*10	ENST00000267163	NM_000321.2	511	gaTTtg/gatg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12028639	12028639	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	374	346	0	ENST00000353533.5:c.842delG	p.Arg281HisfsTer37	p.R281Hfs*37	ENST00000353533	NM_003010.3	281	cGa/ca																																																																														
DNMT1	0	MSKCC	GRCh37	19	10260271	10260271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	504	482	2	ENST00000340748.4:c.2396C>T	p.Ala799Val	p.A799V	ENST00000340748		799	gCt/gTt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198281476	198281476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	324	335	0	ENST00000335508.6:c.655G>A	p.Asp219Asn	p.D219N	ENST00000335508	NM_012433.2	219	Gat/Aat																																																																														
NF2	0	MSKCC	GRCh37	22	30038203	30038203	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	71	411	0	ENST00000338641.4:c.376A>C	p.Ile126Leu	p.I126L	ENST00000338641	NM_000268.3	126	Att/Ctt																																																																														
PIM1	0	MSKCC	GRCh37	6	37139265	37139265	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0018058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	187	231	0	ENST00000373509.5:c.605A>G	p.Asp202Gly	p.D202G	ENST00000373509	NM_002648.3	202	gAt/gGt																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538892	23538892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	287	363	0	ENST00000380871.4:c.547C>A	p.Gln183Lys	p.Q183K	ENST00000380871	NM_006167.3	183	Cag/Aag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8339000	8339000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	400	480	1	ENST00000356435.5:c.5301G>T	p.Gln1767His	p.Q1767H	ENST00000356435		1767	caG/caT																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426720	121426721	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	C			P-0018058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	691	687	0	ENST00000257555.6:c.411_412delTGinsC	p.Gly138AlafsTer17	p.G138Afs*17	ENST00000257555		137	acTGgc/acCgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	271	324	0				ENST00000310581	NM_198253.2																																																																																
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	267	550	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	19	78	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																														
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	141	316	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
ROS1	0	MSKCC	GRCh37	6	117662582	117662582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	125	337	0	ENST00000368508.3:c.4883G>A	p.Gly1628Glu	p.G1628E	ENST00000368508	NM_002944.2	1628	gGa/gAa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50444318	50444318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	96	253	2	ENST00000331340.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000331340	NM_006060.4	83	cGa/cAa																																																																														
PREX2	0	MSKCC	GRCh37	8	69046410	69046410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	306	437	0	ENST00000288368.4:c.3883G>A	p.Glu1295Lys	p.E1295K	ENST00000288368	NM_024870.2	1295	Gaa/Aaa																																																																														
PREX2	0	MSKCC	GRCh37	8	68968149	68968149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	316	556	0	ENST00000288368.4:c.1178G>A	p.Gly393Glu	p.G393E	ENST00000288368	NM_024870.2	393	gGa/gAa																																																																														
RIT1	0	MSKCC	GRCh37	1	155874140	155874140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	248	488	0	ENST00000368323.3:c.391C>T	p.Leu131Phe	p.L131F	ENST00000368323	NM_006912.5	131	Ctt/Ttt																																																																														
DDR2	0	MSKCC	GRCh37	1	162724997	162724997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	296	385	1	ENST00000367921.3:c.469C>T	p.Pro157Ser	p.P157S	ENST00000367921	NM_006182.2	157	Ccg/Tcg																																																																														
RET	0	MSKCC	GRCh37	10	43595970	43595970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	150	568	1	ENST00000355710.3:c.137C>T	p.Ala46Val	p.A46V	ENST00000355710	NM_020975.4	46	gCc/gTc																																																																														
MEN1	0	MSKCC	GRCh37	11	64572246	64572247	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	315	405	1	ENST00000337652.1:c.1407_1408delGGinsAA	p.Ala470Thr	p.A470T	ENST00000337652	NM_130803.2	469	gcGGcc/gcAAcc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18716310	18716310	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	208	288	0	ENST00000266497.5:c.3658-1G>A		p.X1220_splice	ENST00000266497		1220																																																																															
MAP2K1	0	MSKCC	GRCh37	15	66735663	66735664	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	263	387	1	ENST00000307102.5:c.484_485delCCinsTT	p.Pro162Phe	p.P162F	ENST00000307102	NM_002755.3	162	CCt/TTt																																																																														
PALB2	0	MSKCC	GRCh37	16	23635411	23635411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	374	480	2	ENST00000261584.4:c.2753C>T	p.Pro918Leu	p.P918L	ENST00000261584	NM_024675.3	918	cCa/cTa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81941312	81941312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	382	553	0	ENST00000359376.3:c.1490C>T	p.Ala497Val	p.A497V	ENST00000359376	NM_002661.3	497	gCc/gTc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59761073	59761073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	288	431	0	ENST00000259008.2:c.3334G>A	p.Asp1112Asn	p.D1112N	ENST00000259008	NM_032043.2	1112	Gat/Aat																																																																														
BRIP1	0	MSKCC	GRCh37	17	59761496	59761496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	103	252	0	ENST00000259008.2:c.2911C>T	p.Pro971Ser	p.P971S	ENST00000259008	NM_032043.2	971	Cca/Tca																																																																														
DNMT1	0	MSKCC	GRCh37	19	10265139	10265139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	104	345	2	ENST00000340748.4:c.1801C>T	p.Arg601Trp	p.R601W	ENST00000340748		601	Cgg/Tgg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272132	15272132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	284	543	0	ENST00000263388.2:c.6307G>A	p.Asp2103Asn	p.D2103N	ENST00000263388	NM_000435.2	2103	Gac/Aac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211784	36211784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	389	652	1	ENST00000222270.7:c.1535C>T	p.Thr512Ile	p.T512I	ENST00000222270	NM_014727.1	512	aCc/aTc																																																																														
CIC	0	MSKCC	GRCh37	19	42794699	42794700	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	319	589	1	ENST00000575354.2:c.1779_1780delGGinsAA	p.MetAsp593IleAsn	p.MD593IN	ENST00000575354	NM_015125.3	593	atGGat/atAAat																																																																														
ERCC3	0	MSKCC	GRCh37	2	128051207	128051207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	323	517	1	ENST00000285398.2:c.116C>T	p.Pro39Leu	p.P39L	ENST00000285398	NM_000122.1	39	cCc/cTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790031	40790031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	217	392	0	ENST00000373198.4:c.2700G>A	p.Met900Ile	p.M900I	ENST00000373198	NM_133170.3	900	atG/atA																																																																														
RTEL1	0	MSKCC	GRCh37	20	62326812	62326812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	303	597	0	ENST00000508582.2:c.3703G>A	p.Gly1235Arg	p.G1235R	ENST00000508582		1235	Ggg/Agg																																																																														
RHOA	0	MSKCC	GRCh37	3	49405915	49405915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	209	623	0	ENST00000418115.1:c.223C>T	p.Pro75Ser	p.P75S	ENST00000418115	NM_001664.2	75	Cca/Tca																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247350	153247350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	178	418	3	ENST00000281708.4:c.1452G>T	p.Arg484Ser	p.R484S	ENST00000281708	NM_033632.3	484	agG/agT																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177414	56177414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	322	296	0	ENST00000399503.3:c.2387C>T	p.Ser796Phe	p.S796F	ENST00000399503	NM_005921.1	796	tCc/tTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965718	93965718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	254	336	0	ENST00000369303.4:c.2210G>A	p.Gly737Glu	p.G737E	ENST00000369303	NM_004440.3	737	gGa/gAa																																																																														
INHBA	0	MSKCC	GRCh37	7	41729889	41729889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	298	457	0	ENST00000242208.4:c.640C>T	p.Arg214Trp	p.R214W	ENST00000242208	NM_002192.2	214	Cgg/Tgg																																																																														
HGF	0	MSKCC	GRCh37	7	81386517	81386517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	241	293	0	ENST00000222390.5:c.470C>T	p.Pro157Leu	p.P157L	ENST00000222390	NM_000601.4	157	cCa/cTa																																																																														
MET	0	MSKCC	GRCh37	7	116403213	116403213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	413	530	1	ENST00000397752.3:c.2474G>A	p.Gly825Glu	p.G825E	ENST00000397752	NM_000245.2	825	gGg/gAg																																																																														
PREX2	0	MSKCC	GRCh37	8	68995569	68995569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	306	527	0	ENST00000288368.4:c.1973C>T	p.Ser658Leu	p.S658L	ENST00000288368	NM_024870.2	658	tCg/tTg																																																																														
AGO2	0	MSKCC	GRCh37	8	141582931	141582931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	378	546	0	ENST00000220592.5:c.316C>T	p.Leu106Phe	p.L106F	ENST00000220592	NM_012154.3	106	Ctt/Ttt																																																																														
PPP6C	0	MSKCC	GRCh37	9	127916227	127916228	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	311	423	1	ENST00000373547.4:c.416_417delGGinsAA	p.Trp139Ter	p.W139*	ENST00000373547	NM_002721.4	139	tGG/tAA																																																																														
KMT2B	0	MSKCC	GRCh37	19	36218658	36218664	+	protein_altering_variant	In_Frame_Del	DEL	GCGCTTC	GCGCTTC	A			P-0018059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	273	473	0	ENST00000222270.7:c.4362_4368delGCGCTTCinsA	p.Arg1455_Phe1456del	p.R1455_F1456del	ENST00000222270	NM_014727.1	1454	caGCGCTTC/caA																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	162	569	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	83	292	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	73	127	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	84	258	0	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																														
PTEN	0	MSKCC	GRCh37	10	89690821	89690821	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	78	379	0	ENST00000371953.3:c.228T>G	p.Tyr76Ter	p.Y76*	ENST00000371953	NM_000314.4	76	taT/taG																																																																														
RAD54L	0	MSKCC	GRCh37	1	46743758	46743760	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	93	515	0	ENST00000371975.4:c.2050_2052delTGT	p.Cys684del	p.C684del	ENST00000371975	NM_003579.3	683	cGTTgt/cgt																																																																														
PTEN	0	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	167	490	0	ENST00000371953.3:c.70G>T	p.Asp24Tyr	p.D24Y	ENST00000371953	NM_000314.4	24	Gac/Tac																																																																														
MYCN	0	MSKCC	GRCh37	2	16082361	16082361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	293	670	1	ENST00000281043.3:c.175C>A	p.Pro59Thr	p.P59T	ENST00000281043	NM_005378.4	59	Ccc/Acc																																																																														
MSH6	0	MSKCC	GRCh37	2	48018245	48018245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	149	359	0	ENST00000234420.5:c.440T>C	p.Leu147Pro	p.L147P	ENST00000234420	NM_000179.2	147	cTt/cCt																																																																														
BARD1	0	MSKCC	GRCh37	2	215610468	215610468	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	70	431	0	ENST00000260947.4:c.1788delA	p.Lys596AsnfsTer9	p.K596Nfs*9	ENST00000260947	NM_000465.2	596	aaA/aa																																																																														
ATR	0	MSKCC	GRCh37	3	142188386	142188386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	72	346	0	ENST00000350721.4:c.6345G>A	p.Met2115Ile	p.M2115I	ENST00000350721	NM_001184.3	2115	atG/atA																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185161349	185161349	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	110	493	0	ENST00000265026.3:c.776G>A	p.Trp259Ter	p.W259*	ENST00000265026	NM_004721.4	259	tGg/tAg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67576424	67576424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	119	357	0	ENST00000274335.5:c.703C>T	p.Gln235Ter	p.Q235*	ENST00000274335		235	Cag/Tag																																																																														
PREX2	0	MSKCC	GRCh37	8	69020413	69020413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	188	537	0	ENST00000288368.4:c.2785C>T	p.His929Tyr	p.H929Y	ENST00000288368	NM_024870.2	929	Cac/Tac																																																																														
JAK2	0	MSKCC	GRCh37	9	5080630	5080630	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	118	425	0	ENST00000381652.3:c.2381T>C	p.Phe794Ser	p.F794S	ENST00000381652	NM_004972.3	794	tTc/tCc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	201	685	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																														
TP53	0	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	563	808	0	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264271	46264271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	118	412	0	ENST00000371998.3:c.1318G>T	p.Ala440Ser	p.A440S	ENST00000371998		440	Gct/Tct																																																																														
AMER1	0	MSKCC	GRCh37	X	63411774	63411774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	197	459	0	ENST00000330258.3:c.1393C>T	p.Pro465Ser	p.P465S	ENST00000330258	NM_152424.3	465	Ccc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7579491	7579491	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	157	928	1	ENST00000269305.4:c.196delA	p.Met66CysfsTer57	p.M66Cfs*57	ENST00000269305	NM_001126112.2	66	Atg/tg																																																																														
REL	0	MSKCC	GRCh37	2	61128191	61128191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	116	557	0	ENST00000295025.8:c.367A>G	p.Ile123Val	p.I123V	ENST00000295025	NM_002908.2	123	Ata/Gta																																																																														
SETD2	0	MSKCC	GRCh37	3	47147552	47147552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	104	732	1	ENST00000409792.3:c.4774C>G	p.Arg1592Gly	p.R1592G	ENST00000409792	NM_014159.6	1592	Cga/Gga																																																																														
ETV1	0	MSKCC	GRCh37	7	13971307	13971307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	92	557	1	ENST00000405192.2:c.622C>T	p.Arg208Cys	p.R208C	ENST00000405192	NM_001163147.1	208	Cgt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	76	519	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984744	11984745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0018073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	56	387	0	ENST00000353533.5:c.292_293dupAC	p.Ala99LeufsTer5	p.A99Lfs*5	ENST00000353533	NM_003010.3	97	ttc/ttCAc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983743	15983743	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	82	487	1	ENST00000268712.3:c.3379C>T	p.Gln1127Ter	p.Q1127*	ENST00000268712	NM_006311.3	1127	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	431	850	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
XPO1	0	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	224	640	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	514	908	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																														
APC	0	MSKCC	GRCh37	5	112175438	112175439	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	165	371	0	ENST00000257430.4:c.4147_4148delAT	p.Met1383ValfsTer2	p.M1383Vfs*2	ENST00000257430	NM_000038.5	1383	ATg/g																																																																														
SPEN	0	MSKCC	GRCh37	1	16259406	16259406	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	149	488	0	ENST00000375759.3:c.6671A>G	p.Asn2224Ser	p.N2224S	ENST00000375759	NM_015001.2	2224	aAt/aGt																																																																														
FGF3	0	MSKCC	GRCh37	11	69625105	69625105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	161	549	0	ENST00000334134.2:c.688C>G	p.Leu230Val	p.L230V	ENST00000334134	NM_005247.2	230	Ctg/Gtg																																																																														
FLT1	0	MSKCC	GRCh37	13	29001964	29001964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	217	646	1	ENST00000282397.4:c.1201G>T	p.Gly401Trp	p.G401W	ENST00000282397	NM_002019.4	401	Ggg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0018076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	154	756	1	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
MTOR	0	MSKCC	GRCh37	1	11259460	11259460	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	133	531	0	ENST00000361445.4:c.4108G>T	p.Gly1370Cys	p.G1370C	ENST00000361445	NM_004958.3	1370	Ggc/Tgc																																																																														
SPEN	0	MSKCC	GRCh37	1	16247389	16247389	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	83	378	1	ENST00000375759.3:c.1660A>G	p.Met554Val	p.M554V	ENST00000375759	NM_015001.2	554	Atg/Gtg																																																																														
GATA3	0	MSKCC	GRCh37	10	8100790	8100790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	142	671	0	ENST00000346208.3:c.764C>T	p.Ala255Val	p.A255V	ENST00000346208		255	gCc/gTc																																																																														
PGR	0	MSKCC	GRCh37	11	100999099	100999099	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	144	830	0	ENST00000325455.5:c.703C>G	p.Pro235Ala	p.P235A	ENST00000325455	NM_001202474.3	235	Ccg/Gcg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15961904	15961904	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	80	399	0	ENST00000268712.3:c.5891A>G	p.His1964Arg	p.H1964R	ENST00000268712	NM_006311.3	1964	cAc/cGc																																																																														
JAK3	0	MSKCC	GRCh37	19	17953903	17953903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	175	857	1	ENST00000458235.1:c.499G>A	p.Val167Met	p.V167M	ENST00000458235	NM_000215.3	167	Gtg/Atg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99172252	99172252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	144	738	0	ENST00000074304.5:c.1818C>G	p.Cys606Trp	p.C606W	ENST00000074304	NM_001134224.1	606	tgC/tgG																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249512	153249518	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTGTA	ACCTGTA	-			P-0018076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	136	649	0	ENST00000281708.4:c.1260_1266delTACAGGT	p.His420GlnfsTer8	p.H420Qfs*8	ENST00000281708	NM_033632.3	420	caTACAGGT/ca																																																																														
FAT1	0	MSKCC	GRCh37	4	187524960	187524960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	137	689	0	ENST00000441802.2:c.10720G>T	p.Val3574Leu	p.V3574L	ENST00000441802	NM_005245.3	3574	Gtg/Ttg																																																																														
ROS1	0	MSKCC	GRCh37	6	117642491	117642491	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	222	799	0	ENST00000368508.3:c.5708A>G	p.Asp1903Gly	p.D1903G	ENST00000368508	NM_002944.2	1903	gAc/gGc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209421	98209421	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	81	548	3	ENST00000331920.6:c.4117G>C	p.Ala1373Pro	p.A1373P	ENST00000331920	NM_000264.3	1373	Gct/Cct																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	202	1080	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	66	393	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720726	89720726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs878853944		P-0018077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	57	222	1	ENST00000371953.3:c.877G>T	p.Gly293Ter	p.G293*	ENST00000371953	NM_000314.4	293	Gga/Tga																																																																														
AURKB	0	MSKCC	GRCh37	17	8111119	8111119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	70	707	0	ENST00000585124.1:c.88C>T	p.Arg30Trp	p.R30W	ENST00000585124	NM_004217.3	30	Cgg/Tgg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743913	40743913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	147	756	1	ENST00000373198.4:c.3082G>A	p.Gly1028Arg	p.G1028R	ENST00000373198	NM_133170.3	1028	Gga/Aga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591147	67591148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0018077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	92	514	0	ENST00000274335.5:c.1741_1742dupTT	p.Leu581PhefsTer2	p.L581Ffs*2	ENST00000274335		580	-/TT																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399398	139399398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	100	907	2	ENST00000277541.6:c.4745C>T	p.Pro1582Leu	p.P1582L	ENST00000277541	NM_017617.3	1582	cCg/cTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100923	27100946	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAGCAGTTGCCCCCAGCCCAGC	AGCAGCAGTTGCCCCCAGCCCAGC	CCAGT			P-0018077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	139	682	0	ENST00000324856.7:c.4205_4228delAGCAGCAGTTGCCCCCAGCCCAGCinsCCAGT	p.Gln1402ProfsTer73	p.Q1402Pfs*73	ENST00000324856	NM_006015.4	1402	cAGCAGCAGTTGCCCCCAGCCCAGCcc/cCCAGTcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	246	743	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	97	368	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	182	497	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266182	41266182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	102	452	0	ENST00000349496.5:c.179C>T	p.Ser60Phe	p.S60F	ENST00000349496	NM_001904.3	60	tCc/tTc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114910798	114910798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	217	652	0	ENST00000543371.1:c.917C>G	p.Thr306Arg	p.T306R	ENST00000543371	NM_001198531.1	306	aCg/aGg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94192630	94192630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	282	854	0	ENST00000323929.3:c.1444C>T	p.Gln482Ter	p.Q482*	ENST00000323929	NM_005591.3	482	Cag/Tag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43749329	43749329	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	266	801	0	ENST00000382044.4:c.1477G>T	p.Glu493Ter	p.E493*	ENST00000382044	NM_001141980.1	493	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	476	793	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0018081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	99	667	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0018081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	132	695	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
SPEN	0	MSKCC	GRCh37	1	16258593	16258593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	47	548	1	ENST00000375759.3:c.5858C>A	p.Pro1953His	p.P1953H	ENST00000375759	NM_015001.2	1953	cCt/cAt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103528071	103528071	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	45	569	0	ENST00000355739.4:c.3379T>G	p.Ser1127Ala	p.S1127A	ENST00000355739	NM_000123.3	1127	Tca/Gca																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467208	25467208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	187	526	0	ENST00000264709.3:c.1668-1G>T		p.X556_splice	ENST00000264709	NM_175629.2	556																																																																															
SETD2	0	MSKCC	GRCh37	3	47058714	47058714	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	33	641	1	ENST00000409792.3:c.7564A>T	p.Lys2522Ter	p.K2522*	ENST00000409792	NM_014159.6	2522	Aag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	81	565	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																														
ATM	0	MSKCC	GRCh37	11	108160489	108160489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	56	389	0	ENST00000278616.4:c.4397G>A	p.Arg1466Gln	p.R1466Q	ENST00000278616	NM_000051.3	1466	cGa/cAa																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	35	389	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214591	5214591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	54	532	1	ENST00000357368.4:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000357368	NM_002850.3	1492	cGg/cAg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198285221	198285221	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	40	503	0	ENST00000335508.6:c.346delG	p.Glu116LysfsTer11	p.E116Kfs*11	ENST00000335508	NM_012433.2	116	Gaa/aa																																																																														
WWTR1	0	MSKCC	GRCh37	3	149238642	149238642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	31	444	0	ENST00000360632.3:c.1153G>A	p.Asp385Asn	p.D385N	ENST00000360632	NM_015472.4	385	Gat/Aat																																																																														
ESR1	0	MSKCC	GRCh37	6	152129096	152129096	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	56	632	0	ENST00000206249.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000206249	NM_000125.3	17	Cag/Tag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061212	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTAGCAGCCGTTCTCGAACAT	GTAGCAGCCGTTCTCGAACAT	-			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	203	348	0	ENST00000250448.2:c.757_777delATGTTCGAGAACGGCTGCTAC	p.Met253_Tyr259del	p.M253_Y259del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAACGGCTGCTAC/-																																																																														
BRD4	0	MSKCC	GRCh37	19	15376215	15376215	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	99	311	0	ENST00000263377.2:c.799C>G	p.Pro267Ala	p.P267A	ENST00000263377	NM_058243.2	267	Ccc/Gcc																																																																														
EPCAM	0	MSKCC	GRCh37	2	47613741	47613741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	250	428	0	ENST00000263735.4:c.934C>T	p.Leu312Phe	p.L312F	ENST00000263735	NM_002354.2	312	Ctc/Ttc																																																																														
KDR	0	MSKCC	GRCh37	4	55972859	55972859	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	115	430	0	ENST00000263923.4:c.1531A>T	p.Asn511Tyr	p.N511Y	ENST00000263923	NM_002253.2	511	Aac/Tac																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163668	32163668	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	63	244	0	ENST00000375023.3:c.5558A>C	p.His1853Pro	p.H1853P	ENST00000375023	NM_004557.3	1853	cAt/cCt																																																																														
CDK6	0	MSKCC	GRCh37	7	92247415	92247415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	193	317	0	ENST00000265734.4:c.805A>G	p.Ile269Val	p.I269V	ENST00000265734	NM_001259.6	269	Atc/Gtc																																																																														
SPEN	0	MSKCC	GRCh37	1	16257731	16257732	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	TTTGTTTCTG			P-0018086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	204	450	0	ENST00000375759.3:c.4996_4997delCCinsTTTGTTTCTG	p.Pro1666PhefsTer6	p.P1666Ffs*6	ENST00000375759	NM_015001.2	1666	CCt/TTTGTTTCTGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	67	375	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	307	381	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ABL1	0	MSKCC	GRCh37	9	133750394	133750394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	231	517	1	ENST00000318560.5:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000318560	NM_005157.4	409	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057947	27057947	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	216	524	0	ENST00000324856.7:c.1655C>G	p.Ser552Ter	p.S552*	ENST00000324856	NM_006015.4	552	tCa/tGa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88476272	88476272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	488	600	3	ENST00000360948.2:c.1860G>A	p.Met620Ile	p.M620I	ENST00000360948	NM_001012338.2	620	atG/atA																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851710	63851710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	557	680	2	ENST00000279873.7:c.2488G>A	p.Asp830Asn	p.D830N	ENST00000279873	NM_032199.2	830	Gac/Aac																																																																														
MGA	0	MSKCC	GRCh37	15	42046707	42046707	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	550	562	4	ENST00000219905.7:c.7081G>T	p.Glu2361Ter	p.E2361*	ENST00000219905	NM_001164273.1	2361	Gaa/Taa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3823848	3823854	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGGGC	AGCGGGC	-			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	410	442	0	ENST00000262367.5:c.2361_2367delGCCCGCT	p.Pro788ArgfsTer17	p.P788Rfs*17	ENST00000262367	NM_004380.2	787	gcGCCCGCT/gc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828186	72828186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	221	544	0	ENST00000268489.5:c.8395C>T	p.Leu2799Phe	p.L2799F	ENST00000268489	NM_006885.3	2799	Ctt/Ttt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63526209	63526209	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	217	499	0	ENST00000307078.5:c.2417A>G	p.Lys806Arg	p.K806R	ENST00000307078	NM_004655.3	806	aAa/aGa																																																																														
INHA	0	MSKCC	GRCh37	2	220439480	220439480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	177	439	0	ENST00000243786.2:c.333C>A	p.Phe111Leu	p.F111L	ENST00000243786	NM_002191.3	111	ttC/ttA																																																																														
SRC	0	MSKCC	GRCh37	20	36024667	36024667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	504	592	0	ENST00000358208.4:c.656C>T	p.Ser219Phe	p.S219F	ENST00000358208		219	tCc/tTc																																																																														
EIF4E	0	MSKCC	GRCh37	4	99808261	99808261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	393	383	0	ENST00000280892.6:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000280892	NM_001130678.1	143	cGa/cAa																																																																														
TET2	0	MSKCC	GRCh37	4	106180915	106180915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	117	310	2	ENST00000380013.4:c.3943G>A	p.Asp1315Asn	p.D1315N	ENST00000380013	NM_001127208.2	1315	Gac/Aac																																																																														
EZH2	0	MSKCC	GRCh37	7	148525910	148525910	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	242	608	0	ENST00000320356.2:c.547G>C	p.Asp183His	p.D183H	ENST00000320356	NM_004456.4	183	Gat/Cat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828176	72828176	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	197	433	0	ENST00000268489.5:c.8405delC	p.Pro2802LeufsTer22	p.P2802Lfs*22	ENST00000268489	NM_006885.3	2802	cCt/ct																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	26	315	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	14	334	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0018091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	22	281	2	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	609	499	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
TP53	0	MSKCC	GRCh37	17	7579408	7579460	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTG	-			P-0018092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	1012	475	0	ENST00000269305.4:c.227_279delCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTG	p.Ala76ValfsTer55	p.A76Vfs*55	ENST00000269305	NM_001126112.2	76	gCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTG/g																																																																														
EPHA5	0	MSKCC	GRCh37	4	66509084	66509085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	99	381	0	ENST00000273854.3:c.242dupA	p.Asn81LysfsTer8	p.N81Kfs*8	ENST00000273854	NM_004439.5	81	aat/aaAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023381	27023381	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	291	247	2	ENST00000324856.7:c.487delG	p.Ala163ProfsTer69	p.A163Pfs*69	ENST00000324856	NM_006015.4	163	Gcc/cc																																																																														
GLI1	0	MSKCC	GRCh37	12	57861825	57861825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	549	483	1	ENST00000228682.2:c.1126C>A	p.Pro376Thr	p.P376T	ENST00000228682	NM_005269.2	376	Cct/Act																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158476	26158476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	63	471	1	ENST00000289316.2:c.79G>T	p.Gly27Trp	p.G27W	ENST00000289316	NM_138720.2	27	Ggg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	33	358	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	501	598	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	109	361	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	200	310	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																														
TSC2	0	MSKCC	GRCh37	16	2135247	2135247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	172	564	1	ENST00000219476.3:c.4586G>A	p.Arg1529Gln	p.R1529Q	ENST00000219476	NM_000548.3	1529	cGg/cAg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274794	123274794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	322	647	0	ENST00000358487.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000358487	NM_000141.4	375	tAc/tGc																																																																														
PTEN	0	MSKCC	GRCh37	10	89712011	89712012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0018098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	62	242	0	ENST00000371953.3:c.630_631dup	p.Cys211PhefsTer11	p.C211Ffs*11	ENST00000371953	NM_000314.4	210	act/acTTt																																																																														
POLE	0	MSKCC	GRCh37	12	133253983	133253983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	215	751	0	ENST00000320574.5:c.767A>G	p.Glu256Gly	p.E256G	ENST00000320574	NM_006231.2	256	gAa/gGa																																																																														
APC	0	MSKCC	GRCh37	5	112175687	112175687	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	236	426	2	ENST00000257430.4:c.4396G>T	p.Gly1466Ter	p.G1466*	ENST00000257430	NM_000038.5	1466	Gga/Tga																																																																														
STK11	0	MSKCC	GRCh37	19	1220476	1220476	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	582	719	0	ENST00000326873.7:c.569T>C	p.Leu190Pro	p.L190P	ENST00000326873	NM_000455.4	190	cTc/cCc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118361952	118361952	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	163	253	0	ENST00000534358.1:c.4738G>C	p.Asp1580His	p.D1580H	ENST00000534358	NM_005933.3	1580	Gac/Cac																																																																														
CDK12	0	MSKCC	GRCh37	17	37686994	37686994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	443	483	0	ENST00000447079.4:c.3898G>A	p.Ala1300Thr	p.A1300T	ENST00000447079	NM_015083.1	1300	Gcc/Acc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2211104	2211104	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	193	772	1	ENST00000398665.3:c.1358A>T	p.Tyr453Phe	p.Y453F	ENST00000398665	NM_032482.2	453	tAc/tTc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46587815	46587815	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	262	481	0	ENST00000263734.3:c.493G>C	p.Glu165Gln	p.E165Q	ENST00000263734	NM_001430.4	165	Gag/Cag																																																																														
PAK7	0	MSKCC	GRCh37	20	9520112	9520112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	79	254	0	ENST00000353224.5:c.2157C>G	p.His719Gln	p.H719Q	ENST00000353224	NM_177990.2	719	caC/caG																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42866314	42866328	+	inframe_deletion	In_Frame_Del	DEL	GGGCTGCGTGCAGAC	GGGCTGCGTGCAGAC	-			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	114	510	0	ENST00000398585.3:c.304_318delGTCTGCACGCAGCCC	p.Val102_Pro106del	p.V102_P106del	ENST00000398585	NM_001135099.1	102	GTCTGCACGCAGCCC/-																																																																														
APC	0	MSKCC	GRCh37	5	112175139	112175139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	137	232	0	ENST00000257430.4:c.3848C>T	p.Ala1283Val	p.A1283V	ENST00000257430	NM_000038.5	1283	gCt/gTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	152012257	152012257	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	119	412	0	ENST00000262189.6:c.556A>C	p.Asn186His	p.N186H	ENST00000262189	NM_170606.2	186	Aac/Cac																																																																														
BCOR	0	MSKCC	GRCh37	X	39932240	39932240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	192	885	1	ENST00000378444.4:c.2359C>T	p.Pro787Ser	p.P787S	ENST00000378444	NM_001123385.1	787	Ccg/Tcg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	195	466	0	ENST00000344626.4:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000344626	NM_003072.3	1192	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	289	491	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	152	702	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0018101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	103	464	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	143	412	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920404	114920404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	134	480	0	ENST00000543371.1:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000543371	NM_001198531.1	449	Gca/Aca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	608	541	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0018102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	134	378	0				ENST00000310581	NM_198253.2																																																																																
MET	0	MSKCC	GRCh37	7	116339500	116339500	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	308	254	0	ENST00000397752.3:c.362T>G	p.Val121Gly	p.V121G	ENST00000397752	NM_000245.2	121	gTt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0018103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	119	469	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
KLF4	0	MSKCC	GRCh37	9	110249983	110249983	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	55	286	0	ENST00000374672.4:c.692T>A	p.Leu231Gln	p.L231Q	ENST00000374672	NM_004235.4	231	cTg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	132	438	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	57	450	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	58	447	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	87	618	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925334	114925334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	96	623	0	ENST00000543371.1:c.1412G>A	p.Arg471His	p.R471H	ENST00000543371	NM_001198531.1	471	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112174751	112174753	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	28	371	0	ENST00000257430.4:c.3468_3470delAGA	p.Glu1157del	p.E1157del	ENST00000257430	NM_000038.5	1154	GAA/-																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114903750	114903750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	103	620	0	ENST00000543371.1:c.754C>T	p.Gln252Ter	p.Q252*	ENST00000543371	NM_001198531.1	252	Caa/Taa																																																																														
WT1	0	MSKCC	GRCh37	11	32417953	32417953	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	67	419	0	ENST00000332351.3:c.1099G>T	p.Asp367Tyr	p.D367Y	ENST00000332351	NM_024426.4	367	Gat/Tat																																																																														
ARID2	0	MSKCC	GRCh37	12	46123832	46123832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	60	309	0	ENST00000334344.6:c.98C>G	p.Pro33Arg	p.P33R	ENST00000334344	NM_152641.2	33	cCt/cGt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212625	36212625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	122	804	0	ENST00000222270.7:c.2376G>T	p.Met792Ile	p.M792I	ENST00000222270	NM_014727.1	792	atG/atT																																																																														
APC	0	MSKCC	GRCh37	5	112173563	112173563	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	43	357	0	ENST00000257430.4:c.2272A>T	p.Lys758Ter	p.K758*	ENST00000257430	NM_000038.5	758	Aaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	259	989	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	201	844	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	84	636	1	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																														
NSD1	0	MSKCC	GRCh37	5	176696802	176696802	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	86	387	0	ENST00000439151.2:c.5508delA	p.Ala1837LeufsTer12	p.A1837Lfs*12	ENST00000439151	NM_022455.4	1835	Aaa/aa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	206	608	1	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	333	1267	5	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830902	72830903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	123	595	0	ENST00000268489.5:c.5677_5678dup	p.Asp1894GlyfsTer21	p.D1894Gfs*21	ENST00000268489	NM_006885.3	1893	agg/agAGg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	278	876	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
EP300	0	MSKCC	GRCh37	22	41572404	41572404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	252	867	0	ENST00000263253.7:c.4933C>T	p.Arg1645Ter	p.R1645*	ENST00000263253	NM_001429.3	1645	Cga/Tga																																																																														
EP300	0	MSKCC	GRCh37	22	41566524	41566525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	208	738	1	ENST00000263253.7:c.4408dup	p.Met1470AsnfsTer3	p.M1470Nfs*3	ENST00000263253	NM_001429.3	1467	-/A																																																																														
SLX4	0	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	156	1237	8	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780921	9780921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	154	785	1	ENST00000377346.4:c.1643G>A	p.Arg548Gln	p.R548Q	ENST00000377346	NM_005026.3	548	cGg/cAg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63845638	63845638	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	182	539	0	ENST00000279873.7:c.1379delA	p.Lys460SerfsTer19	p.K460Sfs*19	ENST00000279873	NM_032199.2	459	ccA/cc																																																																														
WT1	0	MSKCC	GRCh37	11	32456497	32456497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	60	199	0	ENST00000332351.3:c.395C>T	p.Pro132Leu	p.P132L	ENST00000332351	NM_024426.4	132	cCg/cTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49418618	49418618	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	250	833	0	ENST00000301067.7:c.15896A>G	p.His5299Arg	p.H5299R	ENST00000301067	NM_003482.3	5299	cAt/cGt																																																																														
CTCF	0	MSKCC	GRCh37	16	67644826	67644826	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	184	738	0	ENST00000264010.4:c.95delG	p.Gly32AlafsTer30	p.G32Afs*30	ENST00000264010	NM_006565.3	31	Ggg/gg																																																																														
INSR	0	MSKCC	GRCh37	19	7117379	7117379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	62	835	0	ENST00000302850.5:c.3837G>A	p.Met1279Ile	p.M1279I	ENST00000302850	NM_000208.2	1279	atG/atA																																																																														
CIC	0	MSKCC	GRCh37	19	42798155	42798155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	69	881	0	ENST00000575354.2:c.4109T>C	p.Val1370Ala	p.V1370A	ENST00000575354	NM_015125.3	1370	gTg/gCg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31389195	31389195	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	178	742	0	ENST00000328111.2:c.2108A>T	p.Lys703Met	p.K703M	ENST00000328111	NM_006892.3	703	aAg/aTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	244	1074	0	ENST00000263967.3:c.1635G>C	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaC																																																																														
TP63	0	MSKCC	GRCh37	3	189590693	189590693	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	311	926	0	ENST00000264731.3:c.1258T>C	p.Ser420Pro	p.S420P	ENST00000264731	NM_003722.4	420	Tcc/Ccc																																																																														
FAT1	0	MSKCC	GRCh37	4	187538961	187538961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	109	685	1	ENST00000441802.2:c.8779G>A	p.Val2927Met	p.V2927M	ENST00000441802	NM_005245.3	2927	Gtg/Atg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38966741	38966741	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	142	527	0	ENST00000357387.3:c.1299+2T>C		p.X433_splice	ENST00000357387	NM_152756.3	433																																																																															
DAXX	0	MSKCC	GRCh37	6	33286921	33286921	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	228	981	0	ENST00000374542.5:c.2016delC	p.Leu673TrpfsTer22	p.L673Wfs*22	ENST00000374542	NM_001141970.1	672	ccC/cc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401854	139401854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	290	987	2	ENST00000277541.6:c.3546G>T	p.Glu1182Asp	p.E1182D	ENST00000277541	NM_017617.3	1182	gaG/gaT																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223787	53223788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	306	1254	0	ENST00000375401.3:c.3570_3571dup	p.Gly1191ValfsTer74	p.G1191Vfs*74	ENST00000375401	NM_004187.3	1191	ggg/gTGgg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53227036	53227036	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	73	811	1	ENST00000375401.3:c.2539C>T	p.Gln847Ter	p.Q847*	ENST00000375401	NM_004187.3	847	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1901	329	1046	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			356	297	1303	1	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																														
KIT	0	MSKCC	GRCh37	4	55573290	55573290	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs143388949		P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	105	787	0	ENST00000288135.5:c.952A>G	p.Met318Val	p.M318V	ENST00000288135	NM_000222.2	318	Atg/Gtg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111855750	111856076	+	splice_acceptor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	GCCCCTTACAGAATGCCACTTGGTAGGGGAGTGCATGTTTCCCTGCATCTTCACCAGCACTGGGTGTTATGGTCGCGTTGGATTTCTGCTGTGGTGCCCGGTGTGTAATGGGGCCTACACCTGCTTGCCCACCTGCTTACTCCTTGTCGCCCCCCCACCCACGTGTCTTTCAGCCCGGCCGCACCACCTGGGTCTCCGCCATGAACGGGCCTGCCCTGCAGCCCTCCTCGCCCTCTTCCGCGCCCTCAGCCTCCCCGGCGGCGGCCCCGCGGGGCTGGAGCGAGTTCTGTGAGTTGCACGCCGTAGCGGCGGCCCGGGAGCTGGCCC	GCCCCTTACAGAATGCCACTTGGTAGGGGAGTGCATGTTTCCCTGCATCTTCACCAGCACTGGGTGTTATGGTCGCGTTGGATTTCTGCTGTGGTGCCCGGTGTGTAATGGGGCCTACACCTGCTTGCCCACCTGCTTACTCCTTGTCGCCCCCCCACCCACGTGTCTTTCAGCCCGGCCGCACCACCTGGGTCTCCGCCATGAACGGGCCTGCCCTGCAGCCCTCCTCGCCCTCTTCCGCGCCCTCAGCCTCCCCGGCGGCGGCCCCGCGGGGCTGGAGCGAGTTCTGTGAGTTGCACGCCGTAGCGGCGGCCCGGGAGCTGGCCC	-			P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2	107	35	2	ENST00000341259.2:c.-27-170_130delCCTTACAGAATGCCACTTGGTAGGGGAGTGCATGTTTCCCTGCATCTTCACCAGCACTGGGTGTTATGGTCGCGTTGGATTTCTGCTGTGGTGCCCGGTGTGTAATGGGGCCTACACCTGCTTGCCCACCTGCTTACTCCTTGTCGCCCCCCCACCCACGTGTCTTTCAGCCCGGCCGCACCACCTGGGTCTCCGCCATGAACGGGCCTGCCCTGCAGCCCTCCTCGCCCTCTTCCGCGCCCTCAGCCTCCCCGGCGGCGGCCCCGCGGGGCTGGAGCGAGTTCTGTGAGTTGCACGCCGTAGCGGCGGCCCGGGAGCTGGCCCGCC		p.X9_splice	ENST00000341259	NM_005475.2	9																																																																															
CYLD	0	MSKCC	GRCh37	16	50813907	50813907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	31	967	0	ENST00000398568.2:c.1461G>T	p.Trp487Cys	p.W487C	ENST00000398568	NM_001042412.1	487	tgG/tgT																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830244	72830244	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			70	29	320	0	ENST00000268489.5:c.6337C>T	p.Gln2113Ter	p.Q2113*	ENST00000268489	NM_006885.3	2113	Cag/Tag																																																																														
FANCA	0	MSKCC	GRCh37	16	89816216	89816216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			404	48	946	0	ENST00000389301.3:c.3161G>A	p.Arg1054Lys	p.R1054K	ENST00000389301	NM_000135.2	1054	aGa/aAa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5231417	5231417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	185	1075	1	ENST00000357368.4:c.2059G>A	p.Glu687Lys	p.E687K	ENST00000357368	NM_002850.3	687	Gag/Aag																																																																														
CALR	0	MSKCC	GRCh37	19	13050882	13050882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	136	867	0	ENST00000316448.5:c.413G>A	p.Gly138Asp	p.G138D	ENST00000316448	NM_004343.3	138	gGc/gAc																																																																														
ALK	0	MSKCC	GRCh37	2	29754796	29754796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			247	90	554	0	ENST00000389048.3:c.1139C>T	p.Thr380Ile	p.T380I	ENST00000389048	NM_004304.4	380	aCt/aTt																																																																														
PRKCI	0	MSKCC	GRCh37	3	169988339	169988339	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1695	133	526	0	ENST00000295797.4:c.581C>G	p.Ser194Cys	p.S194C	ENST00000295797	NM_002740.5	194	tCt/tGt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139862	55139862	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	93	586	0	ENST00000257290.5:c.1523G>C	p.Gly508Ala	p.G508A	ENST00000257290	NM_006206.4	508	gGa/gCa																																																																														
TERT	0	MSKCC	GRCh37	5	1294993	1294993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			79	39	91	0	ENST00000310581.5:c.112C>A	p.Leu38Met	p.L38M	ENST00000310581	NM_198253.2	38	Ctg/Atg																																																																														
INHBA	0	MSKCC	GRCh37	7	41729697	41729697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			430	186	900	0	ENST00000242208.4:c.832G>T	p.Gly278Trp	p.G278W	ENST00000242208	NM_002192.2	278	Ggg/Tgg																																																																														
INHBA	0	MSKCC	GRCh37	7	41739894	41739894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	166	705	0	ENST00000242208.4:c.79G>A	p.Glu27Lys	p.E27K	ENST00000242208	NM_002192.2	27	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	119	894	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	69	553	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	216	916	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
FLT3	0	MSKCC	GRCh37	13	28636100	28636100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	145	874	0	ENST00000241453.7:c.272T>A	p.Leu91Gln	p.L91Q	ENST00000241453	NM_004119.2	91	cTg/cAg																																																																														
PALB2	0	MSKCC	GRCh37	16	23641487	23641487	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	174	956	28	ENST00000261584.4:c.1988G>C	p.Arg663Pro	p.R663P	ENST00000261584	NM_024675.3	663	cGc/cCc																																																																														
CALR	0	MSKCC	GRCh37	19	13050343	13050343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	172	751	0	ENST00000316448.5:c.295C>G	p.His99Asp	p.H99D	ENST00000316448	NM_004343.3	99	Cat/Gat																																																																														
GATA2	0	MSKCC	GRCh37	3	128200121	128200121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	201	929	1	ENST00000341105.2:c.1184C>T	p.Thr395Ile	p.T395I	ENST00000341105	NM_032638.4	395	aCt/aTt																																																																														
FGFR1	0	MSKCC	GRCh37	8	38274908	38274954	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGACAAGTCTTTCTCTGTTGCGTCCGCTTTAAAGAACACGTTGAGA	CTGACAAGTCTTTCTCTGTTGCGTCCGCTTTAAAGAACACGTTGAGA	-			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	58	1081	0	ENST00000425967.3:c.1646-20_1672delTCTCAACGTGTTCTTTAAAGCGGACGCAACAGAGAAAGACTTGTCAG		p.X549_splice	ENST00000425967	NM_001174067.1	549																																																																															
RECQL4	0	MSKCC	GRCh37	8	145737698	145737698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	155	842	0	ENST00000428558.2:c.3065G>A	p.Arg1022His	p.R1022H	ENST00000428558	NM_004260.3	1022	cGt/cAt																																																																														
TSC1	0	MSKCC	GRCh37	9	135777017	135777017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	175	769	0	ENST00000298552.3:c.2461G>T	p.Val821Leu	p.V821L	ENST00000298552	NM_001162426.1	821	Gtg/Ttg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279556	123279594	+	inframe_deletion	In_Frame_Del	DEL	CTTGATCCACTGGATGTGGGGCTGGGCATCACTGTAAAC	CTTGATCCACTGGATGTGGGGCTGGGCATCACTGTAAAC	-			P-0018110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	218	815	0	ENST00000358487.5:c.838_876delGTTTACAGTGATGCCCAGCCCCACATCCAGTGGATCAAG	p.Val280_Lys292del	p.V280_K292del	ENST00000358487	NM_000141.4	280	GTTTACAGTGATGCCCAGCCCCACATCCAGTGGATCAAG/-																																																																														
AR	0	MSKCC	GRCh37	X	66766298	66766298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	34	218	0	ENST00000374690.3:c.1310C>T	p.Thr437Ile	p.T437I	ENST00000374690	NM_000044.3	437	aCt/aTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0018111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	255	489	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	104	480	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0018111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1285	36	1208	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101044	41101044	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143164081		P-0018111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	126	749	1	ENST00000373198.4:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000373198	NM_133170.3	438	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100135	27100139	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTC	CCTTC	-			P-0018111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	150	990	0	ENST00000324856.7:c.3932_3936delCTTCC	p.Pro1311GlnfsTer10	p.P1311Qfs*10	ENST00000324856	NM_006015.4	1311	CCTTCc/c																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106533	27106533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	248	1259	2	ENST00000324856.7:c.6144G>A	p.Trp2048Ter	p.W2048*	ENST00000324856	NM_006015.4	2048	tgG/tgA																																																																														
CCND1	0	MSKCC	GRCh37	11	69465988	69465988	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	36	1109	2	ENST00000227507.2:c.826G>T	p.Glu276Ter	p.E276*	ENST00000227507	NM_053056.2	276	Gag/Tag																																																																														
TSC2	0	MSKCC	GRCh37	16	2106201	2106201	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	120	880	0	ENST00000219476.3:c.604A>G	p.Ile202Val	p.I202V	ENST00000219476	NM_000548.3	202	Atc/Gtc																																																																														
SOX9	0	MSKCC	GRCh37	17	70117623	70117624	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0018111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	155	926	3	ENST00000245479.2:c.91_92delGCinsTT	p.Ala31Leu	p.A31L	ENST00000245479	NM_000346.3	31	GCg/TTg																																																																														
NSD1	0	MSKCC	GRCh37	5	176562685	176562685	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	254	1093	0	ENST00000439151.2:c.581A>G	p.Asn194Ser	p.N194S	ENST00000439151	NM_022455.4	194	aAt/aGt																																																																														
BCOR	0	MSKCC	GRCh37	X	39932687	39932687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	250	1335	0	ENST00000378444.4:c.1912A>G	p.Ile638Val	p.I638V	ENST00000378444	NM_001123385.1	638	Ata/Gta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	202	1001	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	167	925	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67200305	67200305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	83	738	1	ENST00000312629.5:c.613C>A	p.Gln205Lys	p.Q205K	ENST00000312629	NM_003952.2	205	Cag/Aag																																																																														
ATM	0	MSKCC	GRCh37	11	108236109	108236109	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	66	855	0	ENST00000278616.4:c.9045G>C	p.Glu3015Asp	p.E3015D	ENST00000278616	NM_000051.3	3015	gaG/gaC																																																																														
KRAS	0	MSKCC	GRCh37	12	25380320	25380320	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	127	734	0	ENST00000256078.4:c.138T>G	p.Ile46Met	p.I46M	ENST00000256078	NM_033360.2	46	atT/atG																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	303	688	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
MGA	0	MSKCC	GRCh37	15	42032371	42032371	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	59	821	0	ENST00000219905.7:c.4555A>C	p.Lys1519Gln	p.K1519Q	ENST00000219905	NM_001164273.1	1519	Aag/Cag																																																																														
NF1	0	MSKCC	GRCh37	17	29654570	29654571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAAT			P-0018113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	405	475	1	ENST00000358273.4:c.5325_5328dupATCA	p.Val1777IlefsTer6	p.V1777Ifs*6	ENST00000358273	NM_001042492.2	1774	-/CAAT																																																																														
CDK12	0	MSKCC	GRCh37	17	37682552	37682553	+	missense_variant	Missense_Mutation	DNP	CA	CA	AC			P-0018113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1484	94	505	0	ENST00000447079.4:c.3743_3744delCAinsAC	p.Pro1248His	p.P1248H	ENST00000447079	NM_015083.1	1248	cCA/cAC																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114255	73114266	+	inframe_deletion	In_Frame_Del	DEL	AGAAGAGGATGA	AGAAGAGGATGA	-			P-0018113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	31	463	0	ENST00000356692.5:c.906_917delAGAGGATGAAGA	p.Asp304_Glu307del	p.D304_E307del	ENST00000356692		297	acAGAAGAGGATGAa/aca																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	66	210	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	229	882	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
AR	0	MSKCC	GRCh37	X	66765159	66765188	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	82	184	0	ENST00000374690.3:c.210_239delGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	p.Gln71_Gln80del	p.Q71_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																														
TET2	0	MSKCC	GRCh37	4	106197413	106197413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	196	531	0	ENST00000380013.4:c.5746C>T	p.Leu1916Phe	p.L1916F	ENST00000380013	NM_001127208.2	1916	Ctt/Ttt																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467747	50467747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	250	762	0	ENST00000331340.3:c.982C>T	p.Arg328Cys	p.R328C	ENST00000331340	NM_006060.4	328	Cgc/Tgc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251725	212251725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144311212		P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	159	419	0	ENST00000342788.4:c.3334C>T	p.Arg1112Cys	p.R1112C	ENST00000342788	NM_005235.2	1112	Cgc/Tgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49441780	49441781	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	360	695	0	ENST00000301067.7:c.4203_4204delTC	p.Gln1402ValfsTer29	p.Q1402Vfs*29	ENST00000301067	NM_003482.3	1401	tcTCag/tcag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061142	38061161	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTTCCGCTCCCGCCCCCG	CGCTTCCGCTCCCGCCCCCG	-			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	95	169	0	ENST00000250448.2:c.828_847delCGGGGGCGGGAGCGGAAGCG	p.Gly278GlnfsTer8	p.G278Qfs*8	ENST00000250448	NM_004496.3	276	ggCGGGGGCGGGAGCGGAAGCGgg/gggg																																																																														
TP53	0	MSKCC	GRCh37	17	7576838	7576866	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAAGACTTAGTACCTGAAGGGTGAAAT	CCCAAGACTTAGTACCTGAAGGGTGAAAT	GATAAGATGG			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	176	812	2	ENST00000269305.4:c.980_993+15delATTTCACCCTTCAGGTACTAAGTCTTGGGinsCCATCTTATC		p.X327_splice	ENST00000269305	NM_001126112.2	327																																																																															
SOS1	0	MSKCC	GRCh37	2	39281838	39281838	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	374	965	0	ENST00000402219.2:c.637delC	p.Arg213AspfsTer4	p.R213Dfs*4	ENST00000402219	NM_005633.3	213	Cga/ga																																																																														
PBRM1	0	MSKCC	GRCh37	3	52598148	52598148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	327	881	2	ENST00000394830.3:c.3718G>A	p.Asp1240Asn	p.D1240N	ENST00000394830	NM_018313.4	1240	Gac/Aac																																																																														
AR	0	MSKCC	GRCh37	X	66765188	66765188	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	10	137	0	ENST00000374690.3:c.200A>T	p.Gln67Leu	p.Q67L	ENST00000374690	NM_000044.3	67	cAg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	34	549	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
GATA3	0	MSKCC	GRCh37	10	8111517	8111518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	43	811	0	ENST00000346208.3:c.1004dupA	p.Asp335GlufsTer17	p.D335Efs*17	ENST00000346208		335	gac/gAac																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023123	31023123	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	115	655	0	ENST00000375687.4:c.2609delG	p.Gly870AlafsTer6	p.G870Afs*6	ENST00000375687	NM_015338.5	870	Ggc/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	219	876	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	367	1081	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	27	345	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag																																																																														
IGF1R	0	MSKCC	GRCh37	15	99459972	99459972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	236	698	3	ENST00000268035.6:c.2068G>A	p.Glu690Lys	p.E690K	ENST00000268035	NM_000875.3	690	Gag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187532552	187532552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	169	438	0	ENST00000441802.2:c.9841G>T	p.Asp3281Tyr	p.D3281Y	ENST00000441802	NM_005245.3	3281	Gat/Tat																																																																														
MGA	0	MSKCC	GRCh37	15	42040955	42040955	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	307	825	0	ENST00000219905.7:c.5333C>G	p.Ser1778Ter	p.S1778*	ENST00000219905	NM_001164273.1	1778	tCa/tGa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302673	15302673	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	351	1148	0	ENST00000263388.2:c.685G>C	p.Glu229Gln	p.E229Q	ENST00000263388	NM_000435.2	229	Gag/Cag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120460379	120460379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	111	626	0	ENST00000256646.2:c.5936C>G	p.Ser1979Cys	p.S1979C	ENST00000256646	NM_024408.3	1979	tCt/tGt																																																																														
BLM	0	MSKCC	GRCh37	15	91298159	91298159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	172	569	1	ENST00000355112.3:c.1078G>A	p.Asp360Asn	p.D360N	ENST00000355112	NM_000057.2	360	Gac/Aac																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274223	10274223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	90	449	0	ENST00000330684.3:c.46C>G	p.Leu16Val	p.L16V	ENST00000330684	NM_001134407.1	16	Ctg/Gtg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81969908	81969908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	315	896	1	ENST00000359376.3:c.2977G>A	p.Asp993Asn	p.D993N	ENST00000359376	NM_002661.3	993	Gac/Aac																																																																														
NCOR1	0	MSKCC	GRCh37	17	16068409	16068409	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	30	83	0	ENST00000268712.3:c.502G>C	p.Asp168His	p.D168H	ENST00000268712	NM_006311.3	168	Gat/Cat																																																																														
CDK12	0	MSKCC	GRCh37	17	37650804	37650804	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	317	960	0	ENST00000447079.4:c.2276G>C	p.Arg759Thr	p.R759T	ENST00000447079	NM_015083.1	759	aGa/aCa																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395716	45395716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	233	601	0	ENST00000262160.6:c.418C>T	p.His140Tyr	p.H140Y	ENST00000262160	NM_005901.5	140	Cat/Tat																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302865	15302865	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	340	976	0	ENST00000263388.2:c.585G>C	p.Glu195Asp	p.E195D	ENST00000263388	NM_000435.2	195	gaG/gaC																																																																														
INPP4A	0	MSKCC	GRCh37	2	99182606	99182606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	157	389	0	ENST00000074304.5:c.2409C>G	p.Ile803Met	p.I803M	ENST00000074304	NM_001134224.1	803	atC/atG																																																																														
EPHB1	0	MSKCC	GRCh37	3	134884831	134884831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	155	456	2	ENST00000398015.3:c.1607G>A	p.Arg536Lys	p.R536K	ENST00000398015	NM_004441.4	536	aGg/aAg																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665360	138665360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	74	1066	1	ENST00000330315.3:c.205G>C	p.Glu69Gln	p.E69Q	ENST00000330315	NM_023067.3	69	Gag/Cag																																																																														
APC	0	MSKCC	GRCh37	5	112116502	112116502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	150	471	0	ENST00000257430.4:c.547G>A	p.Asp183Asn	p.D183N	ENST00000257430	NM_000038.5	183	Gat/Aat																																																																														
PRDM1	0	MSKCC	GRCh37	6	106555344	106555344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	31	686	0	ENST00000369096.4:c.2461G>C	p.Glu821Gln	p.E821Q	ENST00000369096	NM_001198.3	821	Gaa/Caa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157470056	157470081	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGGCTGCTGCGAACTCAGCACAAA	GCAGGCTGCTGCGAACTCAGCACAAA	-			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	70	369	0	ENST00000346085.5:c.2855_2879+1delCTGCTGCGAACTCAGCACAAAGCAGG		p.MQAAANSAQS950fs	ENST00000346085	NM_020732.3	950	atGCAGGCTGCTGCGAACTCAGCACAAAgc/atgc																																																																														
PREX2	0	MSKCC	GRCh37	8	69058452	69058452	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	88	644	0	ENST00000288368.4:c.4096C>G	p.Leu1366Val	p.L1366V	ENST00000288368	NM_024870.2	1366	Ctt/Gtt																																																																														
JAK2	0	MSKCC	GRCh37	9	5054737	5054999	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCCTTCTACACAGAGAAATTTGAAGTAAAAGAACCTGGAAGTGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAAGAAAGTGAGACACTGACAGAACAGGTAATCCTTAATGATATGTTCTTGTTCTTTGTTATTTTAAGTACAATGGAAATAAAAACAAAGTAATTTTAATCATTTGCAACATGGTATTGCACTTCTCCCATTTGATAGAAGT	TGCCTTCTACACAGAGAAATTTGAAGTAAAAGAACCTGGAAGTGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAAGAAAGTGAGACACTGACAGAACAGGTAATCCTTAATGATATGTTCTTGTTCTTTGTTATTTTAAGTACAATGGAAATAAAAACAAAGTAATTTTAATCATTTGCAACATGGTATTGCACTTCTCCCATTTGATAGAAGT	-			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	46	637	0	ENST00000381652.3:c.789_936+115delTGCCTTCTACACAGAGAAATTTGAAGTAAAAGAACCTGGAAGTGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAAGAAAGTGAGACACTGACAGAACAGGTAATCCTTAATGATATGTTCTTGTTCTTTGTTATTTTAAGTACAATGGAAATAAAAACAAAGTAATTTTAATCATTTGCAACATGGTATTGCACTTCTCCCATTTGATAGAAGT		p.X263_splice	ENST00000381652	NM_004972.3	263																																																																															
TSC1	0	MSKCC	GRCh37	9	135771774	135771774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	360	1155	0	ENST00000298552.3:c.3343G>C	p.Glu1115Gln	p.E1115Q	ENST00000298552	NM_001162426.1	1115	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	208	573	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	519	637	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983806	15983810	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TGATG	TGATG	-			P-0018122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	391	626	1	ENST00000268712.3:c.3312_3316delCATCA	p.Tyr1104Ter	p.Y1104*	ENST00000268712	NM_006311.3	1104	taCATCAag/taag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177011	56177015	+	frameshift_variant	Frame_Shift_Del	DEL	ATAGA	ATAGA	TATC			P-0018122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	172	444	1	ENST00000399503.3:c.2281_2285delATAGAinsTATC	p.Ile761TyrfsTer38	p.I761Yfs*38	ENST00000399503	NM_005921.1	761	ATAGAt/TATCt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56180541	56180558	+	inframe_deletion	In_Frame_Del	DEL	ACTAAGAGAAGAGATAAG	ACTAAGAGAAGAGATAAG	-			P-0018122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	146	503	0	ENST00000399503.3:c.3871_3888delCTAAGAGAAGAGATAAGA	p.Leu1291_Arg1296del	p.L1291_R1296del	ENST00000399503	NM_005921.1	1290	gcACTAAGAGAAGAGATAAGa/gca																																																																														
CARD11	0	MSKCC	GRCh37	7	2963948	2963948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	275	653	0	ENST00000396946.4:c.1859C>A	p.Ser620Tyr	p.S620Y	ENST00000396946	NM_032415.4	620	tCc/tAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0018125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	80	461	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
CDH1	0	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	124	811	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	431	924	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425329	49425329	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	376	855	1	ENST00000301067.7:c.13159C>T	p.Gln4387Ter	p.Q4387*	ENST00000301067	NM_003482.3	4387	Cag/Tag																																																																														
FLT3	0	MSKCC	GRCh37	13	28599027	28599027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	410	787	0	ENST00000241453.7:c.2261G>T	p.Gly754Val	p.G754V	ENST00000241453	NM_004119.2	754	gGg/gTg																																																																														
RB1	0	MSKCC	GRCh37	13	49047494	49047494	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0018126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	229	471	1	ENST00000267163.4:c.2490-2A>T		p.X830_splice	ENST00000267163	NM_000321.2	830																																																																															
SUZ12	0	MSKCC	GRCh37	17	30321616	30321616	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	349	603	0	ENST00000322652.5:c.1471A>G	p.Ile491Val	p.I491V	ENST00000322652	NM_015355.2	491	Atc/Gtc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589012	67589012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	152	348	0	ENST00000274335.5:c.1103A>G	p.Tyr368Cys	p.Y368C	ENST00000274335		368	tAt/tGt																																																																														
EGFR	0	MSKCC	GRCh37	7	55210024	55210024	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	281	598	0	ENST00000275493.2:c.134A>G	p.Glu45Gly	p.E45G	ENST00000275493	NM_005228.3	45	gAa/gGa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395021	139395021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	178	423	0	ENST00000277541.6:c.5917G>T	p.Ala1973Ser	p.A1973S	ENST00000277541	NM_017617.3	1973	Gca/Tca																																																																														
BAP1	0	MSKCC	GRCh37	3	52442575	52442575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	73	599	2	ENST00000460680.1:c.170G>A	p.Arg57Gln	p.R57Q	ENST00000460680	NM_004656.3	57	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	123	1001	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	50	613	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	93	805	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793340	242793340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201540918		P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	62	1070	1	ENST00000334409.5:c.737C>T	p.Thr246Met	p.T246M	ENST00000334409	NM_005018.2	246	aCg/aTg																																																																														
ATM	0	MSKCC	GRCh37	11	108199948	108199948	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	55	466	0	ENST00000278616.4:c.7290T>G	p.His2430Gln	p.H2430Q	ENST00000278616	NM_000051.3	2430	caT/caG																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435279	49435279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181521514		P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	49	787	1	ENST00000301067.7:c.6274G>A	p.Asp2092Asn	p.D2092N	ENST00000301067	NM_003482.3	2092	Gac/Aac																																																																														
APC	0	MSKCC	GRCh37	5	112173473	112173473	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	35	476	1	ENST00000257430.4:c.2182A>G	p.Asn728Asp	p.N728D	ENST00000257430	NM_000038.5	728	Aat/Gat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	74	350	0				ENST00000310581	NM_198253.2																																																																																
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	254	728	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	213	584	1	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0018131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	280	523	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
PLK2	0	MSKCC	GRCh37	5	57750568	57750568	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	51	523	0	ENST00000274289.3:c.1900A>G	p.Ile634Val	p.I634V	ENST00000274289	NM_006622.3	634	Atc/Gtc																																																																														
TAP1	0	MSKCC	GRCh37	6	32821343	32821343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	259	849	0	ENST00000354258.4:c.251G>T	p.Gly84Val	p.G84V	ENST00000354258	NM_000593.5	84	gGg/gTg																																																																														
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0018132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	119	298	2				ENST00000310581	NM_198253.2																																																																																
PARK2	0	MSKCC	GRCh37	6	162622218	162622218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	124	524	0	ENST00000366898.1:c.479G>A	p.Gly160Glu	p.G160E	ENST00000366898	NM_004562.2	160	gGa/gAa																																																																														
MTOR	0	MSKCC	GRCh37	1	11317148	11317148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	246	797	0	ENST00000361445.4:c.346C>T	p.Pro116Ser	p.P116S	ENST00000361445	NM_004958.3	116	Ccc/Tcc																																																																														
NRAS	0	MSKCC	GRCh37	1	115256528	115256529	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0018132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	235	848	1	ENST00000369535.4:c.182_183invAA	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAA/cTT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425896	49425896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1496	216	718	0	ENST00000301067.7:c.12592C>T	p.Arg4198Ter	p.R4198*	ENST00000301067	NM_003482.3	4198	Cga/Tga																																																																														
MDM2	0	MSKCC	GRCh37	12	69218146	69218146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	2168	444	0	ENST00000462284.1:c.362C>T	p.Ser121Leu	p.S121L	ENST00000462284	NM_002392.5	121	tCa/tTa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247224	153247224	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	224	682	0	ENST00000281708.4:c.1578G>A	p.Trp526Ter	p.W526*	ENST00000281708	NM_033632.3	526	tgG/tgA																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32180359	32180359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	177	742	1	ENST00000375023.3:c.2572C>T	p.His858Tyr	p.H858Y	ENST00000375023	NM_004557.3	858	Cac/Tac																																																																														
PREX2	0	MSKCC	GRCh37	8	69104760	69104760	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0018132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	205	465	0	ENST00000288368.4:c.4604G>A	p.Arg1535Gln	p.R1535Q	ENST00000288368	NM_024870.2	1535	cGg/cAg																																																																														
EGFR	0	MSKCC	GRCh37	7	55210044	55210044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	172	632	1	ENST00000275493.2:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000275493	NM_005228.3	52	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	143	683	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
DIS3	0	MSKCC	GRCh37	13	73336073	73336073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	46	313	0	ENST00000377767.4:c.2330C>T	p.Ser777Leu	p.S777L	ENST00000377767	NM_014953.3	777	tCa/tTa																																																																														
RB1	0	MSKCC	GRCh37	13	49033833	49033833	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	91	502	0	ENST00000267163.4:c.1970T>C	p.Leu657Pro	p.L657P	ENST00000267163	NM_000321.2	657	cTa/cCa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061024	38061024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	44	181	0	ENST00000250448.2:c.965G>T	p.Gly322Val	p.G322V	ENST00000250448	NM_004496.3	322	gGc/gTc																																																																														
GPS2	0	MSKCC	GRCh37	17	7217677	7217700	+	inframe_deletion	In_Frame_Del	DEL	GCTTCTCTTCCTGTAGAGCCAAAA	GCTTCTCTTCCTGTAGAGCCAAAA	-			P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	88	473	0	ENST00000380728.2:c.227_250delTTTTGGCTCTACAGGAAGAGAAGC	p.Leu76_Lys83del	p.L76_K83del	ENST00000380728		76	cTTTTGGCTCTACAGGAAGAGAAGCac/cac																																																																														
STK19	0	MSKCC	GRCh37	6	31939981	31939981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	92	337	0	ENST00000375331.2:c.208G>A	p.Gly70Arg	p.G70R	ENST00000375331	NM_004197.1	70	Gga/Aga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3819187	3819188	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	G			P-0018134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	82	448	0	ENST00000262367.5:c.3047_3048delAGinsC	p.Glu1016AlafsTer6	p.E1016Afs*6	ENST00000262367	NM_004380.2	1016	gAG/gC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	71	913	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578525	7578525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	134	1200	6	ENST00000269305.4:c.405C>A	p.Cys135Ter	p.C135*	ENST00000269305	NM_001126112.2	135	tgC/tgA																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971069	21971069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	46	336	0	ENST00000304494.5:c.289C>G	p.Leu97Val	p.L97V	ENST00000304494	NM_000077.4	97	Ctg/Gtg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971069	21971069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	46	336	0	ENST00000304494.5:c.289C>G	p.Leu97Val	p.L97V	ENST00000304494	NM_000077.4	97	Ctg/Gtg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971069	21971069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	46	336	0	ENST00000304494.5:c.289C>G	p.Leu97Val	p.L97V	ENST00000304494	NM_000077.4	97	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0018136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	152	836	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36219685	36219685	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	63	888	0	ENST00000222270.7:c.4582C>G	p.Pro1528Ala	p.P1528A	ENST00000222270	NM_014727.1	1528	Ccc/Gcc																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	258	963	1	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591931	48591931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	31	426	0	ENST00000342988.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000342988	NM_005359.5	365	gGt/gAt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209465	98209465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	85	453	0	ENST00000331920.6:c.4073G>T	p.Gly1358Val	p.G1358V	ENST00000331920	NM_000264.3	1358	gGc/gTc																																																																														
MTOR	0	MSKCC	GRCh37	1	11184601	11184601	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	140	714	0	ENST00000361445.4:c.6616A>G	p.Asn2206Asp	p.N2206D	ENST00000361445	NM_004958.3	2206	Aac/Gac																																																																														
RB1	5925	MSKCC	GRCh37	13	49027156	49027159	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	11	581	0	ENST00000267163.4:c.1726_1729del	p.Ser576ArgfsTer34	p.S576Rfs*34	ENST00000267163	NM_000321.2	575	CAATca/ca																																																																														
NF1	0	MSKCC	GRCh37	17	29533290	29533291	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	66	354	0	ENST00000358273.4:c.1296_1297delGT	p.Tyr433LeufsTer5	p.Y433Lfs*5	ENST00000358273	NM_001042492.2	431	gcTGtg/gctg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5231530	5231530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	103	698	1	ENST00000357368.4:c.1946G>T	p.Gly649Val	p.G649V	ENST00000357368	NM_002850.3	649	gGg/gTg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198281592	198281592	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	80	543	1	ENST00000335508.6:c.539A>T	p.Glu180Val	p.E180V	ENST00000335508	NM_012433.2	180	gAa/gTa																																																																														
EP300	0	MSKCC	GRCh37	22	41546039	41546039	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	66	1024	0	ENST00000263253.7:c.2654C>G	p.Thr885Arg	p.T885R	ENST00000263253	NM_001429.3	885	aCa/aGa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391034	89391034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	78	737	2	ENST00000336596.2:c.1100G>T	p.Gly367Val	p.G367V	ENST00000336596	NM_005233.5	367	gGg/gTg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920240	1920240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	149	766	0	ENST00000382891.5:c.1300G>C	p.Gly434Arg	p.G434R	ENST00000382891	NM_133335.3	434	Gga/Cga																																																																														
KDR	0	MSKCC	GRCh37	4	55980328	55980328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	81	725	0	ENST00000263923.4:c.763G>C	p.Gly255Arg	p.G255R	ENST00000263923	NM_002253.2	255	Ggg/Cgg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143081638	143081638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	79	427	0	ENST00000262992.4:c.1436G>A	p.Gly479Glu	p.G479E	ENST00000262992	NM_001101669.1	479	gGa/gAa																																																																														
MED12	0	MSKCC	GRCh37	X	70345232	70345232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	106	329	2	ENST00000374080.3:c.2258G>T	p.Arg753Leu	p.R753L	ENST00000374080		753	cGg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	139	843	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	207	703	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591115	67591116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	56	442	0	ENST00000274335.5:c.1710dupT	p.Ile571TyrfsTer31	p.I571Yfs*31	ENST00000274335		570	ctt/cTtt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0018139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	239	948	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																														
CCND1	0	MSKCC	GRCh37	11	69466040	69466040	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	88	683	0	ENST00000227507.2:c.878T>G	p.Val293Gly	p.V293G	ENST00000227507	NM_053056.2	293	gTg/gGg																																																																														
SPEN	0	MSKCC	GRCh37	1	16257510	16257510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	68	487	0	ENST00000375759.3:c.4775G>A	p.Arg1592Gln	p.R1592Q	ENST00000375759	NM_015001.2	1592	cGg/cAg																																																																														
ATM	0	MSKCC	GRCh37	11	108178689	108178689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	30	349	0	ENST00000278616.4:c.5740G>A	p.Asp1914Asn	p.D1914N	ENST00000278616	NM_000051.3	1914	Gac/Aac																																																																														
SOX9	0	MSKCC	GRCh37	17	70120405	70120406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	191	1149	2	ENST00000245479.2:c.1409dupA	p.Asn470LysfsTer108	p.N470Kfs*108	ENST00000245479	NM_000346.3	469	-/A																																																																														
PTPRT	0	MSKCC	GRCh37	20	41076937	41076937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	62	695	0	ENST00000373198.4:c.1483G>A	p.Gly495Arg	p.G495R	ENST00000373198	NM_133170.3	495	Ggg/Agg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67588965	67588966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	27	366	0	ENST00000274335.5:c.1059dupG	p.Thr354AspfsTer10	p.T354Dfs*10	ENST00000274335		352	-/G																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	151	736	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0018141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	32	395	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0018141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	32	395	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	52	403	2	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729939	30729940	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0018141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	30	432	0	ENST00000359013.4:c.1535_1536delTG	p.Met512LysfsTer28	p.M512Kfs*28	ENST00000359013	NM_001024847.2	512	aTG/a																																																																														
PAX5	0	MSKCC	GRCh37	9	37015019	37015019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	64	506	1	ENST00000358127.4:c.385G>A	p.Val129Met	p.V129M	ENST00000358127	NM_001280556.1	129	Gtg/Atg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	131	529	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
ATM	0	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	93	353	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32168695	32168695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143103753		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	105	617	0	ENST00000375023.3:c.4228C>T	p.Arg1410Cys	p.R1410C	ENST00000375023	NM_004557.3	1410	Cgc/Tgc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	54	307	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																														
MYCN	0	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	155	765	7	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39647380	39647380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	108	333	1	ENST00000262039.4:c.2552C>T	p.Ser851Leu	p.S851L	ENST00000262039	NM_002647.2	851	tCg/tTg																																																																														
SUFU	0	MSKCC	GRCh37	10	104375092	104375092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	125	523	0	ENST00000369902.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000369902	NM_016169.3	364	Cgg/Tgg																																																																														
REL	0	MSKCC	GRCh37	2	61118821	61118821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146326268		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	45	164	0	ENST00000295025.8:c.14C>T	p.Ala5Val	p.A5V	ENST00000295025	NM_002908.2	5	gCg/gTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399976	139399976	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200495793		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	87	648	1	ENST00000277541.6:c.4372G>A	p.Ala1458Thr	p.A1458T	ENST00000277541	NM_017617.3	1458	Gcg/Acg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401080	139401080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	48	528	0	ENST00000277541.6:c.3913G>A	p.Glu1305Lys	p.E1305K	ENST00000277541	NM_017617.3	1305	Gag/Aag																																																																														
TET2	0	MSKCC	GRCh37	4	106197518	106197518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	63	351	1	ENST00000380013.4:c.5851C>T	p.Arg1951Trp	p.R1951W	ENST00000380013	NM_001127208.2	1951	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087408	27087408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	60	630	0	ENST00000324856.7:c.1982T>C	p.Val661Ala	p.V661A	ENST00000324856	NM_006015.4	661	gTg/gCg																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439772	51439772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	74	210	0	ENST00000262662.1:c.337G>C	p.Glu113Gln	p.E113Q	ENST00000262662		113	Gaa/Caa																																																																														
RET	0	MSKCC	GRCh37	10	43615108	43615108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149891333		P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	58	627	1	ENST00000355710.3:c.2522C>T	p.Pro841Leu	p.P841L	ENST00000355710	NM_020975.4	841	cCg/cTg																																																																														
TET1	0	MSKCC	GRCh37	10	70451416	70451439	+	inframe_deletion	In_Frame_Del	DEL	CAGGCAGCTAATGAAGGTCCAGAA	CAGGCAGCTAATGAAGGTCCAGAA	-			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	102	600	0	ENST00000373644.4:c.6259_6282del	p.Ala2087_Gln2094del	p.A2087_Q2094del	ENST00000373644	NM_030625.2	2086	CAGGCAGCTAATGAAGGTCCAGAA/-																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373313	118373313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	144	487	0	ENST00000534358.1:c.6706G>A	p.Ala2236Thr	p.A2236T	ENST00000534358	NM_005933.3	2236	Gct/Act																																																																														
ARID2	0	MSKCC	GRCh37	12	46245709	46245709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	84	472	0	ENST00000334344.6:c.3803A>G	p.Asn1268Ser	p.N1268S	ENST00000334344	NM_152641.2	1268	aAc/aGc																																																																														
LATS2	0	MSKCC	GRCh37	13	21557762	21557762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	95	580	3	ENST00000382592.4:c.2083G>A	p.Ala695Thr	p.A695T	ENST00000382592	NM_014572.2	695	Gcc/Acc																																																																														
FLT1	0	MSKCC	GRCh37	13	28896484	28896484	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	66	556	0	ENST00000282397.4:c.2966del	p.Phe989SerfsTer11	p.F989Sfs*11	ENST00000282397	NM_002019.4	989	tTc/tc																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643524	38643524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	42	588	2	ENST00000299084.4:c.994C>T	p.Arg332Cys	p.R332C	ENST00000299084	NM_152594.2	332	Cgt/Tgt																																																																														
CTCF	0	MSKCC	GRCh37	16	67650720	67650720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	116	563	2	ENST00000264010.4:c.1025G>A	p.Arg342His	p.R342H	ENST00000264010	NM_006565.3	342	cGt/cAt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37866342	37866342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	76	303	0	ENST00000269571.5:c.647C>T	p.Thr216Met	p.T216M	ENST00000269571		216	aCg/aTg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63534428	63534428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	114	638	0	ENST00000307078.5:c.1093G>A	p.Val365Met	p.V365M	ENST00000307078	NM_004655.3	365	Gtg/Atg																																																																														
INSR	0	MSKCC	GRCh37	19	7125341	7125341	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	126	574	0	ENST00000302850.5:c.3211T>C	p.Phe1071Leu	p.F1071L	ENST00000302850	NM_000208.2	1071	Ttc/Ctc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610156	10610156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	109	632	0	ENST00000171111.5:c.554T>C	p.Ile185Thr	p.I185T	ENST00000171111	NM_203500.1	185	aTc/aCc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144509	11144509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	76	594	1	ENST00000344626.4:c.3841G>A	p.Val1281Ile	p.V1281I	ENST00000344626	NM_003072.3	1281	Gtc/Atc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281482	15281482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	96	352	0	ENST00000263388.2:c.4891G>T	p.Gly1631Trp	p.G1631W	ENST00000263388	NM_000435.2	1631	Ggg/Tgg																																																																														
JAK3	0	MSKCC	GRCh37	19	17945810	17945810	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	36	525	0	ENST00000458235.1:c.2050C>T	p.Leu684Phe	p.L684F	ENST00000458235	NM_000215.3	684	Ctc/Ttc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213980	36213980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	172	667	0	ENST00000222270.7:c.2806T>C	p.Ser936Pro	p.S936P	ENST00000222270	NM_014727.1	936	Tca/Cca																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52714640	52714640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	50	503	0	ENST00000322088.6:c.398A>G	p.Lys133Arg	p.K133R	ENST00000322088	NM_014225.5	133	aAg/aGg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251724	212251724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	58	274	0	ENST00000342788.4:c.3335G>A	p.Arg1112His	p.R1112H	ENST00000342788	NM_005235.2	1112	cGc/cAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47058590	47058590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	40	506	0	ENST00000409792.3:c.7688T>C	p.Leu2563Ser	p.L2563S	ENST00000409792	NM_014159.6	2563	tTa/tCa																																																																														
FAM175A	0	MSKCC	GRCh37	4	84383988	84383988	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	88	539	3	ENST00000321945.7:c.864del	p.Pro289GlnfsTer13	p.P289Qfs*13	ENST00000321945	NM_139076.2	288	ttT/tt																																																																														
FAT1	0	MSKCC	GRCh37	4	187540904	187540904	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	20	313	0	ENST00000441802.2:c.6836A>G	p.Asn2279Ser	p.N2279S	ENST00000441802	NM_005245.3	2279	aAc/aGc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149499653	149499653	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	89	502	0	ENST00000261799.4:c.2620A>C	p.Ser874Arg	p.S874R	ENST00000261799	NM_002609.3	874	Agc/Cgc																																																																														
CCND3	0	MSKCC	GRCh37	6	41908131	41908131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	71	499	2	ENST00000372991.4:c.391G>A	p.Ala131Thr	p.A131T	ENST00000372991	NM_001760.3	131	Gct/Act																																																																														
KMT2C	0	MSKCC	GRCh37	7	151864310	151864310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	63	408	1	ENST00000262189.6:c.9671G>A	p.Arg3224His	p.R3224H	ENST00000262189	NM_170606.2	3224	cGt/cAt																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538751	23538751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	23	249	0	ENST00000380871.4:c.688A>G	p.Ser230Gly	p.S230G	ENST00000380871	NM_006167.3	230	Agc/Ggc																																																																														
AGO2	0	MSKCC	GRCh37	8	141572580	141572580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	111	442	2	ENST00000220592.5:c.490G>A	p.Val164Met	p.V164M	ENST00000220592	NM_012154.3	164	Gtg/Atg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87359969	87359969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	63	350	0	ENST00000277120.3:c.1277C>A	p.Thr426Asn	p.T426N	ENST00000277120		426	aCc/aAc																																																																														
RXRA	0	MSKCC	GRCh37	9	137309037	137309037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	169	699	0	ENST00000481739.1:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000481739	NM_002957.4	215	cGg/cAg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53254069	53254069	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0018147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	40	199	0	ENST00000375401.3:c.3G>A	p.Met1?	p.M1?	ENST00000375401	NM_004187.3	1	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	380	479	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
MDC1	0	MSKCC	GRCh37	6	30680968	30680968	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2517560		P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	300	463	0	ENST00000376406.3:c.751G>A	p.Glu251Lys	p.E251K	ENST00000376406	NM_014641.2	251	Gaa/Aaa																																																																														
EP300	0	MSKCC	GRCh37	22	41566488	41566488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	17	368	0	ENST00000263253.7:c.4365G>C	p.Gln1455His	p.Q1455H	ENST00000263253	NM_001429.3	1455	caG/caC																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602496	10602496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	352	372	0	ENST00000171111.5:c.1082C>T	p.Pro361Leu	p.P361L	ENST00000171111	NM_203500.1	361	cCg/cTg																																																																														
NSD1	0	MSKCC	GRCh37	5	176637673	176637673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	429	657	1	ENST00000439151.2:c.2273C>T	p.Ser758Leu	p.S758L	ENST00000439151	NM_022455.4	758	tCa/tTa																																																																														
ATRX	0	MSKCC	GRCh37	X	76912075	76912075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	169	471	0	ENST00000373344.5:c.4189G>A	p.Glu1397Lys	p.E1397K	ENST00000373344	NM_000489.3	1397	Gaa/Aaa																																																																														
RIT1	0	MSKCC	GRCh37	1	155874529	155874529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	298	518	0	ENST00000368323.3:c.230C>G	p.Ala77Gly	p.A77G	ENST00000368323	NM_006912.5	77	gCt/gGt																																																																														
RB1	0	MSKCC	GRCh37	13	48937091	48937091	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	150	215	0	ENST00000267163.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000267163	NM_000321.2	287	Gag/Tag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2191012	2191012	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	189	217	0	ENST00000398665.3:c.266G>A	p.Trp89Ter	p.W89*	ENST00000398665	NM_032482.2	89	tGg/tAg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31388028	31388028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	191	283	0	ENST00000328111.2:c.1829C>A	p.Ser610Tyr	p.S610Y	ENST00000328111	NM_006892.3	610	tCc/tAc																																																																														
WWTR1	0	MSKCC	GRCh37	3	149374880	149374880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	264	348	0	ENST00000360632.3:c.214G>A	p.Gly72Ser	p.G72S	ENST00000360632	NM_015472.4	72	Ggc/Agc																																																																														
FAT1	0	MSKCC	GRCh37	4	187549372	187549372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	349	565	0	ENST00000441802.2:c.4746G>T	p.Leu1582Phe	p.L1582F	ENST00000441802	NM_005245.3	1582	ttG/ttT																																																																														
KDM5C	0	MSKCC	GRCh37	X	53227679	53227679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	151	391	0	ENST00000375401.3:c.2509G>A	p.Glu837Lys	p.E837K	ENST00000375401	NM_004187.3	837	Gaa/Aaa																																																																														
AMER1	0	MSKCC	GRCh37	X	63411961	63411961	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	22	595	0	ENST00000330258.3:c.1206A>C	p.Glu402Asp	p.E402D	ENST00000330258	NM_152424.3	402	gaA/gaC																																																																														
MED12	0	MSKCC	GRCh37	X	70346942	70346942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	120	413	0	ENST00000374080.3:c.2809C>T	p.Leu937Phe	p.L937F	ENST00000374080		937	Ctc/Ttc																																																																														
FGF3	0	MSKCC	GRCh37	11	69631102	69631102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	41	588	1	ENST00000334134.2:c.310C>T	p.Arg104Ter	p.R104*	ENST00000334134	NM_005247.2	104	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	12	716	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	190	597	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	135	511	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0018153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	104	267	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223230	5223230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	130	651	1	ENST00000357368.4:c.2573C>G	p.Thr858Ser	p.T858S	ENST00000357368	NM_002850.3	858	aCc/aGc																																																																														
TEK	0	MSKCC	GRCh37	9	27206737	27206737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	85	402	0	ENST00000380036.4:c.2522C>T	p.Ala841Val	p.A841V	ENST00000380036	NM_000459.3	841	gCg/gTg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	108	257	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
PGR	0	MSKCC	GRCh37	11	100996418	100996792	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAGTACTATTAGAACAAAGCTGTTTCCTCAAAGCTAAGCAGTTAAGGAACAATAGTAGCACTGTCCTCAAGATTTTTATGACTTATGTCTAATACTGAAAGTGTTAGTCAAAGAGTATGCAATTATAGTACCCAACCACATTCCATTTTGAGTATCATAAATAAAAACATATTGTTAAAATGTCATCATATATTTTAAATTATATGGAAATATCACCATTTCTTATAAGAAACAAGGAATAATTGAAATCTATACAATATTAGATGGTCTCCATTTACAATTAAACCAATAATAAAGGATCAGGGGAAAGGAGCCTACCTTCCATTGCCCTCTTAAAGAAGACCTTACAGCTCCCACAGGTAAGGACACCATA	AAAAGTACTATTAGAACAAAGCTGTTTCCTCAAAGCTAAGCAGTTAAGGAACAATAGTAGCACTGTCCTCAAGATTTTTATGACTTATGTCTAATACTGAAAGTGTTAGTCAAAGAGTATGCAATTATAGTACCCAACCACATTCCATTTTGAGTATCATAAATAAAAACATATTGTTAAAATGTCATCATATATTTTAAATTATATGGAAATATCACCATTTCTTATAAGAAACAAGGAATAATTGAAATCTATACAATATTAGATGGTCTCCATTTACAATTAAACCAATAATAAAGGATCAGGGGAAAGGAGCCTACCTTCCATTGCCCTCTTAAAGAAGACCTTACAGCTCCCACAGGTAAGGACACCATA	-			P-0018154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3	72	2	0	ENST00000325455.5:c.1735_1789+320delTATGGTGTCCTTACCTGTGGGAGCTGTAAGGTCTTCTTTAAGAGGGCAATGGAAGGTAGGCTCCTTTCCCCTGATCCTTTATTATTGGTTTAATTGTAAATGGAGACCATCTAATATTGTATAGATTTCAATTATTCCTTGTTTCTTATAAGAAATGGTGATATTTCCATATAATTTAAAATATATGATGACATTTTAACAATATGTTTTTATTTATGATACTCAAAATGGAATGTGGTTGGGTACTATAATTGCATACTCTTTGACTAACACTTTCAGTATTAGACATAAGTCATAAAAATCTTGAGGACAGTGCTACTATTGTTCCTTAACTGCTTAGCTTTGAGGAAACAGCTTTGTTCTAATAGTACTTTT		p.X579_splice	ENST00000325455	NM_001202474.3	579																																																																															
ATM	0	MSKCC	GRCh37	11	108199818	108199841	+	inframe_deletion	In_Frame_Del	DEL	TTCTCTCATTAGCCCGGTTTTCAG	TTCTCTCATTAGCCCGGTTTTCAG	-			P-0018154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	104	379	0	ENST00000278616.4:c.7160_7183delTTCTCTCATTAGCCCGGTTTTCAG	p.Phe2387_Asp2395delinsTyr	p.F2387_D2395delinsY	ENST00000278616	NM_000051.3	2387	tTTCTCTCATTAGCCCGGTTTTCAGat/tat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440145	49440145	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	565	603	1	ENST00000301067.7:c.4481delG	p.Ser1494IlefsTer12	p.S1494Ifs*12	ENST00000301067	NM_003482.3	1494	aGt/at																																																																														
FAT1	0	MSKCC	GRCh37	4	187510064	187510064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	91	419	0	ENST00000441802.2:c.13449G>T	p.Arg4483Ser	p.R4483S	ENST00000441802	NM_005245.3	4483	agG/agT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	56	538	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	34	294	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	34	294	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	34	294	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
GATA3	0	MSKCC	GRCh37	10	8097731	8097731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	73	420	3	ENST00000346208.3:c.113C>T	p.Ala38Val	p.A38V	ENST00000346208		38	gCg/gTg																																																																														
KDM5A	0	MSKCC	GRCh37	12	463369	463369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	35	478	0	ENST00000399788.2:c.902G>A	p.Arg301Gln	p.R301Q	ENST00000399788	NM_001042603.1	301	cGg/cAg																																																																														
CDK4	0	MSKCC	GRCh37	12	58145121	58145121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	35	351	0	ENST00000257904.6:c.223A>T	p.Met75Leu	p.M75L	ENST00000257904	NM_000075.3	75	Atg/Ttg																																																																														
TP53	0	MSKCC	GRCh37	17	7577118	7577124	+	frameshift_variant	Frame_Shift_Del	DEL	CACGCAC	CACGCAC	-			P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	76	673	0	ENST00000269305.4:c.814_820delGTGCGTG	p.Val272PhefsTer71	p.V272Ffs*71	ENST00000269305	NM_001126112.2	272	GTGCGTGtt/tt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252965	36252966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	63	444	0	ENST00000300305.3:c.395_396dupTG	p.Met133Ter	p.M133*	ENST00000300305		132	-/TG																																																																														
PNRC1	0	MSKCC	GRCh37	6	89793614	89793614	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	75	396	0	ENST00000336032.3:c.683C>G	p.Ala228Gly	p.A228G	ENST00000336032	NM_006813.2	228	gCa/gGa																																																																														
MET	0	MSKCC	GRCh37	7	116412023	116412023	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	137	886	0	ENST00000397752.3:c.3008A>T	p.Tyr1003Phe	p.Y1003F	ENST00000397752	NM_000245.2	1003	tAc/tTc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50459437	50459437	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	39	421	0	ENST00000331340.3:c.726A>T	p.Glu242Asp	p.E242D	ENST00000331340	NM_006060.4	242	gaA/gaT																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513218	106513218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	49	416	0	ENST00000359195.3:c.2122C>A	p.His708Asn	p.H708N	ENST00000359195	NM_002649.2	708	Cac/Aac																																																																														
MET	0	MSKCC	GRCh37	7	116417464	116417464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	76	531	0	ENST00000397752.3:c.3281A>G	p.His1094Arg	p.H1094R	ENST00000397752	NM_000245.2	1094	cAt/cGt																																																																														
GATA1	0	MSKCC	GRCh37	X	48650815	48650815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	47	909	2	ENST00000376670.3:c.684C>A	p.Cys228Ter	p.C228*	ENST00000376670	NM_002049.3	228	tgC/tgA																																																																														
PTEN	0	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0018174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	39	321	1	ENST00000371953.3:c.1027delG		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
FOXA1	0	MSKCC	GRCh37	14	38061220	38061243	+	inframe_deletion	In_Frame_Del	DEL	CGTTCTCGAACATGTTGCCGGAGT	CGTTCTCGAACATGTTGCCGGAGT	-			P-0018174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	82	577	0	ENST00000250448.2:c.746_769delACTCCGGCAACATGTTCGAGAACG	p.Asp249_Asn256del	p.D249_N256del	ENST00000250448	NM_004496.3	249	gACTCCGGCAACATGTTCGAGAACGgc/ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	351	608	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SOX9	0	MSKCC	GRCh37	17	70119050	70119050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	150	490	0	ENST00000245479.2:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000245479	NM_000346.3	208	Cag/Tag																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056425	26056427	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs774779034		P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	69	301	0	ENST00000343677.2:c.230_232del	p.Asn77del	p.N77del	ENST00000343677	NM_005319.3	77	aACAgc/agc																																																																														
CBL	0	MSKCC	GRCh37	11	119170283	119170283	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs144191570		P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	123	416	0	ENST00000264033.4:c.2513G>T	p.Gly838Val	p.G838V	ENST00000264033	NM_005188.3	838	gGc/gTc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729775	41729775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	181	317	1	ENST00000242208.4:c.754G>A	p.Ala252Thr	p.A252T	ENST00000242208	NM_002192.2	252	Gcc/Acc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212130	5212130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	208	847	1	ENST00000357368.4:c.4901C>T	p.Thr1634Met	p.T1634M	ENST00000357368	NM_002850.3	1634	aCg/aTg																																																																														
NEGR1	0	MSKCC	GRCh37	1	72163734	72163734	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	200	853	0	ENST00000357731.5:c.624T>A	p.Asp208Glu	p.D208E	ENST00000357731	NM_173808.2	208	gaT/gaA																																																																														
ARID2	0	MSKCC	GRCh37	12	46246537	46246537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	78	305	0	ENST00000334344.6:c.4631C>T	p.Pro1544Leu	p.P1544L	ENST00000334344	NM_152641.2	1544	cCc/cTc																																																																														
GPS2	0	MSKCC	GRCh37	17	7217804	7217805	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	440	849	0	ENST00000380728.2:c.204+2dupT		p.X68_splice	ENST00000380728		68																																																																															
PRKAR1A	0	MSKCC	GRCh37	17	66526426	66526426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	108	429	0	ENST00000358598.2:c.982G>A	p.Ala328Thr	p.A328T	ENST00000358598	NM_212471.2	328	Gca/Aca																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566857	212566857	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	29	307	0	ENST00000342788.4:c.1324A>T	p.Ile442Phe	p.I442F	ENST00000342788	NM_005235.2	442	Atc/Ttc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266046	41266046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	92	294	0	ENST00000349496.5:c.43G>A	p.Glu15Lys	p.E15K	ENST00000349496	NM_001904.3	15	Gaa/Aaa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467625	66467625	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	123	562	0	ENST00000273854.3:c.644A>C	p.Gln215Pro	p.Q215P	ENST00000273854	NM_004439.5	215	cAa/cCa																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225504	26225504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	90	247	0	ENST00000360408.1:c.122G>A	p.Arg41His	p.R41H	ENST00000360408	NM_003532.2	41	cGc/cAc																																																																														
ROS1	0	MSKCC	GRCh37	6	117674209	117674209	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	228	748	0	ENST00000368508.3:c.4265A>G	p.Lys1422Arg	p.K1422R	ENST00000368508	NM_002944.2	1422	aAg/aGg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692819	89692823	+	frameshift_variant	Frame_Shift_Del	DEL	CAAAC	CAAAC	-			P-0018178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	52	483	0	ENST00000371953.3:c.304_308delAAACC	p.Lys102LeufsTer3	p.K102Lfs*3	ENST00000371953	NM_000314.4	101	atCAAACcc/atcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	50	463	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	91	681	0	ENST00000269305.4:c.747G>C	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agC																																																																														
TBX3	0	MSKCC	GRCh37	12	115118846	115118846	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	64	693	0	ENST00000257566.3:c.495T>G	p.Phe165Leu	p.F165L	ENST00000257566	NM_016569.3	165	ttT/ttG																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351388	89351388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	177	665	0	ENST00000301030.4:c.1562C>T	p.Ser521Phe	p.S521F	ENST00000301030	NM_001256183.1	521	tCc/tTc																																																																														
MLH1	0	MSKCC	GRCh37	3	37048498	37048498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	73	570	0	ENST00000231790.2:c.397G>A	p.Gly133Arg	p.G133R	ENST00000231790	NM_000249.3	133	Gga/Aga																																																																														
NBN	0	MSKCC	GRCh37	8	90965857	90965857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	107	401	0	ENST00000265433.3:c.1460G>T	p.Cys487Phe	p.C487F	ENST00000265433	NM_002485.4	487	tGt/tTt																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737419	145737419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	35	676	1	ENST00000428558.2:c.3268G>A	p.Glu1090Lys	p.E1090K	ENST00000428558	NM_004260.3	1090	Gag/Aag																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029493	14029493	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	155	659	0	ENST00000311895.7:c.1704G>C	p.Arg568Ser	p.R568S	ENST00000311895	NM_005236.2	568	agG/agC																																																																														
TP53	0	MSKCC	GRCh37	17	7578522	7578522	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	312	1116	1	ENST00000269305.4:c.408A>T	p.Gln136His	p.Q136H	ENST00000269305	NM_001126112.2	136	caA/caT																																																																														
B2M	0	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0018184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	19	364	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7576858	7576858	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	199	642	0	ENST00000269305.4:c.988del	p.Leu330PhefsTer15	p.L330Ffs*15	ENST00000269305	NM_001126112.2	330	Ctt/tt																																																																														
RB1	0	MSKCC	GRCh37	13	49039405	49039421	+	frameshift_variant	Frame_Shift_Del	DEL	TACGGATTCCTGGAGGG	TACGGATTCCTGGAGGG	-			P-0018184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	62	840	1	ENST00000267163.4:c.2390_2406delTACGGATTCCTGGAGGG	p.Leu797Ter	p.L797*	ENST00000267163	NM_000321.2	797	tTACGGATTCCTGGAGGG/t																																																																														
SLX4	0	MSKCC	GRCh37	16	3641122	3641122	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	154	1081	0	ENST00000294008.3:c.2517C>G	p.His839Gln	p.H839Q	ENST00000294008	NM_032444.2	839	caC/caG																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502246	186502246	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	30	351	0	ENST00000323963.5:c.55G>C	p.Asp19His	p.D19H	ENST00000323963		19	Gac/Cac																																																																														
INPP4B	0	MSKCC	GRCh37	4	143043396	143043396	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	102	552	0	ENST00000262992.4:c.2020G>T	p.Asp674Tyr	p.D674Y	ENST00000262992	NM_001101669.1	674	Gat/Tat																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910582	29910597	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	-			P-0018184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	199	371	0	ENST00000376809.5:c.122_137delGCGGGGAGCCCCGCTT	p.Arg41ProfsTer31	p.R41Pfs*31	ENST00000376809	NM_002116.7	41	cGCGGGGAGCCCCGCTTc/cc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509141	106509141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	517	699	0	ENST00000359195.3:c.1135C>A	p.Leu379Ile	p.L379I	ENST00000359195	NM_002649.2	379	Ctc/Atc																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128230361	128230361	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	87	754	0	ENST00000265960.3:c.1235A>G	p.Asp412Gly	p.D412G	ENST00000265960	NM_001006617.1	412	gAc/gGc																																																																														
B2M	0	MSKCC	GRCh37	15	45003778	45003790	+	stop_gained,protein_altering_variant	Nonsense_Mutation	INS	CTACTCTCTCTTT	CTACTCTCTCTTT	TGGCCTTAGCTTAGCTTAG			P-0018184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	26	427	0	ENST00000558401.1:c.34_46delCTACTCTCTCTTTinsTGGCCTTAGCTTAGCTTAG	p.Leu12_Ser16delinsTrpProTerLeuSerLeuAla	p.L12_S16delinsWP*LSLA	ENST00000558401	NM_004048.2	12	CTACTCTCTCTTTct/TGGCCTTAGCTTAGCTTAGct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	131	625	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	163	887	1	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579346	7579348	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs764486868		P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	507	980	0	ENST00000269305.4:c.339_341del	p.Phe113del	p.F113del	ENST00000269305	NM_001126112.2	113	ttCTTg/ttg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105745	27105745	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	64	434	0	ENST00000324856.7:c.5356G>C	p.Glu1786Gln	p.E1786Q	ENST00000324856	NM_006015.4	1786	Gag/Cag																																																																														
TET2	0	MSKCC	GRCh37	4	106157624	106157624	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	120	644	0	ENST00000380013.4:c.2525C>G	p.Ser842Ter	p.S842*	ENST00000380013	NM_001127208.2	842	tCa/tGa																																																																														
FGFR1	0	MSKCC	GRCh37	8	38287398	38287398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	138	629	0	ENST00000425967.3:c.259C>T	p.Arg87Cys	p.R87C	ENST00000425967	NM_001174067.1	87	Cgc/Tgc																																																																														
SPEN	0	MSKCC	GRCh37	1	16262280	16262280	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	56	247	0	ENST00000375759.3:c.9545C>G	p.Ser3182Cys	p.S3182C	ENST00000375759	NM_015001.2	3182	tCt/tGt																																																																														
JAK1	0	MSKCC	GRCh37	1	65332680	65332680	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	143	772	0	ENST00000342505.4:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000342505	NM_002227.2	287	Gag/Cag																																																																														
NRAS	0	MSKCC	GRCh37	1	115252327	115252327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	183	599	0	ENST00000369535.4:c.313G>C	p.Asp105His	p.D105H	ENST00000369535	NM_002524.4	105	Gac/Cac																																																																														
DICER1	0	MSKCC	GRCh37	14	95598909	95598909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	109	818	1	ENST00000343455.3:c.250C>G	p.Gln84Glu	p.Q84E	ENST00000343455	NM_177438.2	84	Cag/Gag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817799	3817799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	225	1044	0	ENST00000262367.5:c.3172G>C	p.Glu1058Gln	p.E1058Q	ENST00000262367	NM_004380.2	1058	Gaa/Caa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817871	3817871	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	173	933	0	ENST00000262367.5:c.3100G>T	p.Glu1034Ter	p.E1034*	ENST00000262367	NM_004380.2	1034	Gaa/Taa																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041572	14041572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	162	674	0	ENST00000311895.7:c.2119G>C	p.Glu707Gln	p.E707Q	ENST00000311895	NM_005236.2	707	Gaa/Caa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346511	89346511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	124	713	2	ENST00000301030.4:c.6439G>T	p.Asp2147Tyr	p.D2147Y	ENST00000301030	NM_001256183.1	2147	Gat/Tat																																																																														
ERBB2	0	MSKCC	GRCh37	17	37865697	37865697	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	180	795	0	ENST00000269571.5:c.566C>G	p.Ser189Cys	p.S189C	ENST00000269571		189	tCt/tGt																																																																														
STAT5B	0	MSKCC	GRCh37	17	40375565	40375565	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	84	532	0	ENST00000293328.3:c.385C>G	p.Pro129Ala	p.P129A	ENST00000293328	NM_012448.3	129	Cca/Gca																																																																														
BRCA1	0	MSKCC	GRCh37	17	41242986	41242986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	162	867	0	ENST00000357654.3:c.4160C>T	p.Ser1387Phe	p.S1387F	ENST00000357654	NM_007294.3	1387	tCt/tTt																																																																														
PPM1D	0	MSKCC	GRCh37	17	58677936	58677936	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	109	440	0	ENST00000305921.3:c.161C>A	p.Ser54Ter	p.S54*	ENST00000305921	NM_003620.3	54	tCg/tAg																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774737	73774737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	57	237	0	ENST00000254810.4:c.350G>C	p.Arg117Thr	p.R117T	ENST00000254810	NM_005324.3	117	aGa/aCa																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39620667	39620667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	97	598	0	ENST00000262039.4:c.2065C>G	p.Pro689Ala	p.P689A	ENST00000262039	NM_002647.2	689	Cct/Gct																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11130320	11130320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	366	917	0	ENST00000344626.4:c.2559C>G	p.Phe853Leu	p.F853L	ENST00000344626	NM_003072.3	853	ttC/ttG																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223994	36223994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	165	1086	0	ENST00000222270.7:c.6544G>C	p.Glu2182Gln	p.E2182Q	ENST00000222270	NM_014727.1	2182	Gag/Cag																																																																														
MSH2	0	MSKCC	GRCh37	2	47637445	47637445	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	444	721	0	ENST00000233146.2:c.579G>C	p.Gln193His	p.Q193H	ENST00000233146	NM_000251.2	193	caG/caC																																																																														
CTLA4	0	MSKCC	GRCh37	2	204736181	204736181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	114	536	0	ENST00000302823.3:c.538C>G	p.Leu180Val	p.L180V	ENST00000302823	NM_005214.4	180	Ctc/Gtc																																																																														
CUL3	0	MSKCC	GRCh37	2	225360637	225360637	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	130	611	0	ENST00000264414.4:c.1754C>G	p.Ser585Cys	p.S585C	ENST00000264414	NM_003590.4	585	tCt/tGt																																																																														
U2AF1	0	MSKCC	GRCh37	21	44515836	44515836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	159	1007	0	ENST00000291552.4:c.217G>C	p.Glu73Gln	p.E73Q	ENST00000291552	NM_006758.2	73	Gag/Cag																																																																														
EP300	0	MSKCC	GRCh37	22	41556686	41556686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	132	692	0	ENST00000263253.7:c.3631G>A	p.Glu1211Lys	p.E1211K	ENST00000263253	NM_001429.3	1211	Gag/Aag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52621413	52621413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	345	932	0	ENST00000394830.3:c.3004C>T	p.Pro1002Ser	p.P1002S	ENST00000394830	NM_018313.4	1002	Cca/Tca																																																																														
SHQ1	0	MSKCC	GRCh37	3	72897378	72897378	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	145	711	0	ENST00000325599.8:c.114C>G	p.Phe38Leu	p.F38L	ENST00000325599	NM_018130.2	38	ttC/ttG																																																																														
WWTR1	0	MSKCC	GRCh37	3	149260177	149260177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	106	643	0	ENST00000360632.3:c.716G>C	p.Arg239Thr	p.R239T	ENST00000360632	NM_015472.4	239	aGa/aCa																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182679095	182679095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	130	931	0	ENST00000292782.4:c.439G>C	p.Glu147Gln	p.E147Q	ENST00000292782	NM_020640.2	147	Gaa/Caa																																																																														
DROSHA	0	MSKCC	GRCh37	5	31483667	31483667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	105	626	0	ENST00000344624.3:c.2065C>T	p.Leu689Phe	p.L689F	ENST00000344624		689	Ctt/Ttt																																																																														
RICTOR	0	MSKCC	GRCh37	5	38958917	38958917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	108	475	1	ENST00000357387.3:c.2195C>T	p.Ala732Val	p.A732V	ENST00000357387	NM_152756.3	732	gCa/gTa																																																																														
APC	0	MSKCC	GRCh37	5	112174893	112174893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	137	615	0	ENST00000257430.4:c.3602C>T	p.Ser1201Leu	p.S1201L	ENST00000257430	NM_000038.5	1201	tCa/tTa																																																																														
APC	0	MSKCC	GRCh37	5	112175390	112175390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	105	449	0	ENST00000257430.4:c.4099C>G	p.Gln1367Glu	p.Q1367E	ENST00000257430	NM_000038.5	1367	Cag/Gag																																																																														
APC	0	MSKCC	GRCh37	5	112176641	112176641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	133	734	1	ENST00000257430.4:c.5350G>A	p.Glu1784Lys	p.E1784K	ENST00000257430	NM_000038.5	1784	Gaa/Aaa																																																																														
RAD50	0	MSKCC	GRCh37	5	131973778	131973778	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	68	450	0	ENST00000265335.6:c.3481G>C	p.Glu1161Gln	p.E1161Q	ENST00000265335		1161	Gaa/Caa																																																																														
IRF4	0	MSKCC	GRCh37	6	407554	407554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	186	1041	0	ENST00000380956.4:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000380956	NM_001195286.1	438	Gaa/Aaa																																																																														
MDC1	0	MSKCC	GRCh37	6	30675735	30675735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	261	1199	0	ENST00000376406.3:c.2621C>G	p.Ser874Cys	p.S874C	ENST00000376406	NM_014641.2	874	tCt/tGt																																																																														
PMS2	0	MSKCC	GRCh37	7	6026915	6026915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	32	119	0	ENST00000265849.7:c.1481C>T	p.Ser494Leu	p.S494L	ENST00000265849	NM_000535.5	494	tCg/tTg																																																																														
CDK6	0	MSKCC	GRCh37	7	92247469	92247469	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	129	600	0	ENST00000265734.4:c.751A>T	p.Arg251Trp	p.R251W	ENST00000265734	NM_001259.6	251	Agg/Tgg																																																																														
AGO2	0	MSKCC	GRCh37	8	141566280	141566280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	99	540	0	ENST00000220592.5:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000220592	NM_012154.3	378	Gag/Aag																																																																														
JAK2	0	MSKCC	GRCh37	9	5050746	5050746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	133	756	0	ENST00000381652.3:c.529G>A	p.Glu177Lys	p.E177K	ENST00000381652	NM_004972.3	177	Gaa/Aaa																																																																														
TEK	0	MSKCC	GRCh37	9	27220139	27220139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	146	683	0	ENST00000380036.4:c.3196G>A	p.Glu1066Lys	p.E1066K	ENST00000380036	NM_000459.3	1066	Gag/Aag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399318	139399318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	218	1039	0	ENST00000277541.6:c.4825G>A	p.Asp1609Asn	p.D1609N	ENST00000277541	NM_017617.3	1609	Gac/Aac																																																																														
AMER1	0	MSKCC	GRCh37	X	63412711	63412711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	123	402	0	ENST00000330258.3:c.456G>C	p.Glu152Asp	p.E152D	ENST00000330258	NM_152424.3	152	gaG/gaC																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39637885	39637885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200000040		P-0018188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	56	746	0	ENST00000262039.4:c.2302C>T	p.Arg768Trp	p.R768W	ENST00000262039	NM_002647.2	768	Cgg/Tgg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0018188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	184	210	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0018188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	184	210	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
BAP1	0	MSKCC	GRCh37	3	52436414	52436414	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	200	520	0	ENST00000460680.1:c.2080C>T	p.Gln694Ter	p.Q694*	ENST00000460680	NM_004656.3	694	Cag/Tag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	82	462	0	ENST00000397062.3:c.72G>C	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgC																																																																														
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0018188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	490	646	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
NF2	0	MSKCC	GRCh37	22	30050658	30050658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	110	604	1	ENST00000338641.4:c.460G>A	p.Asp154Asn	p.D154N	ENST00000338641	NM_000268.3	154	Gac/Aac																																																																														
TAP2	0	MSKCC	GRCh37	6	32798123	32798123	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	341	773	2	ENST00000374899.4:c.1556T>A	p.Leu519Gln	p.L519Q	ENST00000374899	NM_018833.2	519	cTg/cAg																																																																														
FYN	0	MSKCC	GRCh37	6	111983007	111983007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	289	843	2	ENST00000368678.4:c.1540C>A	p.Gln514Lys	p.Q514K	ENST00000368678		514	Cag/Aag																																																																														
ALK	0	MSKCC	GRCh37	2	29519869	29519869	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	41	1025	2	ENST00000389048.3:c.1702C>A	p.Leu568Ile	p.L568I	ENST00000389048	NM_004304.4	568	Cta/Ata																																																																														
RNF43	0	MSKCC	GRCh37	17	56435837	56435837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	165	405	0	ENST00000407977.2:c.1300C>T	p.Pro434Ser	p.P434S	ENST00000407977		434	Ccc/Tcc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31019275	31019275	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	224	626	0	ENST00000375687.4:c.870A>T	p.Glu290Asp	p.E290D	ENST00000375687	NM_015338.5	290	gaA/gaT																																																																														
KRAS	0	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	125	1005	0	ENST00000256078.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000256078	NM_033360.2	13	Ggc/Cgc																																																																														
TP53	0	MSKCC	GRCh37	17	7576885	7576885	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	84	827	0	ENST00000269305.4:c.961A>T	p.Lys321Ter	p.K321*	ENST00000269305	NM_001126112.2	321	Aaa/Taa																																																																														
PGR	0	MSKCC	GRCh37	11	100999147	100999147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	60	1144	0	ENST00000325455.5:c.655G>A	p.Val219Met	p.V219M	ENST00000325455	NM_001202474.3	219	Gtg/Atg																																																																														
ARID2	0	MSKCC	GRCh37	12	46287300	46287300	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	50	807	0	ENST00000334344.6:c.5245A>T	p.Arg1749Ter	p.R1749*	ENST00000334344	NM_152641.2	1749	Aga/Tga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3820626	3820626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	45	866	0	ENST00000262367.5:c.2825C>T	p.Pro942Leu	p.P942L	ENST00000262367	NM_004380.2	942	cCt/cTt																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774729	73774729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	29	163	0	ENST00000254810.4:c.358A>G	p.Ile120Val	p.I120V	ENST00000254810	NM_005324.3	120	Atc/Gtc																																																																														
ALK	0	MSKCC	GRCh37	2	29419642	29419642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	122	846	1	ENST00000389048.3:c.4158C>A	p.Cys1386Ter	p.C1386*	ENST00000389048	NM_004304.4	1386	tgC/tgA																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467965	66467965	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	52	637	0	ENST00000273854.3:c.304T>A	p.Cys102Ser	p.C102S	ENST00000273854	NM_004439.5	102	Tgc/Agc																																																																														
FAT1	0	MSKCC	GRCh37	4	187524644	187524644	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	100	1039	0	ENST00000441802.2:c.11036A>T	p.Gln3679Leu	p.Q3679L	ENST00000441802	NM_005245.3	3679	cAg/cTg																																																																														
RAD50	0	MSKCC	GRCh37	5	131972893	131972893	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	47	632	0	ENST00000265335.6:c.3475+1G>T		p.X1159_splice	ENST00000265335		1159																																																																															
PDGFRB	0	MSKCC	GRCh37	5	149504352	149504352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	72	877	2	ENST00000261799.4:c.1850C>T	p.Ala617Val	p.A617V	ENST00000261799	NM_002609.3	617	gCc/gTc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508196	106508196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	42	352	0	ENST00000359195.3:c.190C>A	p.His64Asn	p.H64N	ENST00000359195	NM_002649.2	64	Cac/Aac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8389360	8389360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	28	792	0	ENST00000356435.5:c.4258A>T	p.Arg1420Trp	p.R1420W	ENST00000356435		1420	Agg/Tgg																																																																														
RB1	0	MSKCC	GRCh37	13	48934152	48934152	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	250	422	0	ENST00000267163.4:c.608-1G>A		p.X203_splice	ENST00000267163	NM_000321.2	203																																																																															
TP53	0	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	135	756	0	ENST00000269305.4:c.757A>G	p.Thr253Ala	p.T253A	ENST00000269305	NM_001126112.2	253	Acc/Gcc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098966	178098966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	123	509	0	ENST00000397062.3:c.79G>T	p.Asp27Tyr	p.D27Y	ENST00000397062	NM_006164.4	27	Gat/Tat																																																																														
FH	0	MSKCC	GRCh37	1	241672063	241672063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	77	497	0	ENST00000366560.3:c.578C>A	p.Thr193Lys	p.T193K	ENST00000366560	NM_000143.3	193	aCa/aAa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288470	15288470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	67	305	0	ENST00000263388.2:c.4269C>A	p.Asp1423Glu	p.D1423E	ENST00000263388	NM_000435.2	1423	gaC/gaA																																																																														
PAK7	0	MSKCC	GRCh37	20	9560875	9560875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	136	542	0	ENST00000353224.5:c.907G>A	p.Ala303Thr	p.A303T	ENST00000353224	NM_177990.2	303	Gca/Aca																																																																														
STK19	0	MSKCC	GRCh37	6	31948511	31948511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	63	380	0	ENST00000375331.2:c.982C>G	p.Pro328Ala	p.P328A	ENST00000375331	NM_004197.1	328	Cct/Gct																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106523536	106523536	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	53	507	0	ENST00000359195.3:c.2690delG	p.Gly897AlafsTer11	p.G897Afs*11	ENST00000359195	NM_002649.2	896	gtG/gt																																																																														
NTRK2	0	MSKCC	GRCh37	9	87317149	87317262	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGTACTCAGGACCAGGGCACATTATCTCAGAGAATTTTCCTGTTGTCTGCTCTGGTCAGGCAGGCATTCACTGGTTCGTTCTAATGTGCATGAAATTATGTGTTTTCACAG	GTGAGTACTCAGGACCAGGGCACATTATCTCAGAGAATTTTCCTGTTGTCTGCTCTGGTCAGGCAGGCATTCACTGGTTCGTTCTAATGTGCATGAAATTATGTGTTTTCACAG	-			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	87	607	0	ENST00000277120.3:c.288_287+2delTGAGTACTCAGGACCAGGGCACATTATCTCAGAGAATTTTCCTGTTGTCTGCTCTGGTCAGGCAGGCATTCACTGGTTCGTTCTAATGTGCATGAAATTATGTGTTTTCACAGG		p.X96_splice	ENST00000277120		96																																																																															
NTRK2	0	MSKCC	GRCh37	9	87338624	87339137	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAAGGCTTGTGTTTGGCTGTGTCTTAATAGAGAGACAAGAGTGTTTCAGAATGCGAGAATGTATTAAACCTAGTGATGATCATTTGATATTTTATAAGGCTACATATAGAAATTTACAAAGAGTTTTTGATGTACATTCACTTTCTACTTATTCTTAATTAATAAAGACTAATGCAGGCTTGCATTTTAGTTATGCATACCTAAGAGAGCGAGGAGTCTCTATATCCCTAGTGAGCTCTTTGTATCATCCTGAACAAAGCGAGTGACTTTCCCTGTGGTCTTCTCCCTTGGAGGGAATTCAGGGATCAAGTCAACCTCATGCACTTAGCAATTGAAACCTAGAGAAATAGAATAACTTCTGATTTACTTCTTCGCCTGAGCCCAGTTCAGGCAGAGAAGCTTTTCTAATGCTATATATACATATTTTCTCTAGTTAGGGGAAGAAACCCCAAATCTTGTCACTTTGGGATCAATCCTAATCAAGGTTATTTTTGTCTGTTAATTCATTTGTA	GGTAAGGCTTGTGTTTGGCTGTGTCTTAATAGAGAGACAAGAGTGTTTCAGAATGCGAGAATGTATTAAACCTAGTGATGATCATTTGATATTTTATAAGGCTACATATAGAAATTTACAAAGAGTTTTTGATGTACATTCACTTTCTACTTATTCTTAATTAATAAAGACTAATGCAGGCTTGCATTTTAGTTATGCATACCTAAGAGAGCGAGGAGTCTCTATATCCCTAGTGAGCTCTTTGTATCATCCTGAACAAAGCGAGTGACTTTCCCTGTGGTCTTCTCCCTTGGAGGGAATTCAGGGATCAAGTCAACCTCATGCACTTAGCAATTGAAACCTAGAGAAATAGAATAACTTCTGATTTACTTCTTCGCCTGAGCCCAGTTCAGGCAGAGAAGCTTTTCTAATGCTATATATACATATTTTCTCTAGTTAGGGGAAGAAACCCCAAATCTTGTCACTTTGGGATCAATCCTAATCAAGGTTATTTTTGTCTGTTAATTCATTTGTA	-			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	139	589	0	ENST00000277120.3:c.721-1_720+1delGTAAGGCTTGTGTTTGGCTGTGTCTTAATAGAGAGACAAGAGTGTTTCAGAATGCGAGAATGTATTAAACCTAGTGATGATCATTTGATATTTTATAAGGCTACATATAGAAATTTACAAAGAGTTTTTGATGTACATTCACTTTCTACTTATTCTTAATTAATAAAGACTAATGCAGGCTTGCATTTTAGTTATGCATACCTAAGAGAGCGAGGAGTCTCTATATCCCTAGTGAGCTCTTTGTATCATCCTGAACAAAGCGAGTGACTTTCCCTGTGGTCTTCTCCCTTGGAGGGAATTCAGGGATCAAGTCAACCTCATGCACTTAGCAATTGAAACCTAGAGAAATAGAATAACTTCTGATTTACTTCTTCGCCTGAGCCCAGTTCAGGCAGAGAAGCTTTTCTAATGCTATATATACATATTTTCTCTAGTTAGGGGAAGAAACCCCAAATCTTGTCACTTTGGGATCAATCCTAATCAAGGTTATTTTTGTCTGTTAATTCATTTGTAG		p.X241_splice	ENST00000277120		241																																																																															
NTRK2	0	MSKCC	GRCh37	9	87366899	87366899	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	67	728	0	ENST00000277120.3:c.1297-2A>C		p.X433_splice	ENST00000277120		433																																																																															
ABL1	0	MSKCC	GRCh37	9	133729537	133729537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	75	792	1	ENST00000318560.5:c.166G>T	p.Ala56Ser	p.A56S	ENST00000318560	NM_005157.4	56	Gct/Tct																																																																														
TSC1	0	MSKCC	GRCh37	9	135798853	135798872	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGAGGACAACGACGTCAG	TGTGAGGACAACGACGTCAG	-			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	83	308	0	ENST00000298552.3:c.371_390delCTGACGTCGTTGTCCTCACA	p.Thr124AsnfsTer23	p.T124Nfs*23	ENST00000298552	NM_001162426.1	124	aCTGACGTCGTTGTCCTCACA/a																																																																														
KDM6A	0	MSKCC	GRCh37	X	44941947	44941960	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCTTTTTTAAGT	TCTCTTTTTTAAGT	-			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	47	378	0	ENST00000377967.4:c.3210-10_3213delCTTTTTTAAGTTCT		p.X1070_splice	ENST00000377967	NM_021140.2	1070																																																																															
KDM6A	0	MSKCC	GRCh37	X	44942845	44942845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	53	362	0	ENST00000377967.4:c.3425G>T	p.Arg1142Ile	p.R1142I	ENST00000377967	NM_021140.2	1142	aGa/aTa																																																																														
GATA1	0	MSKCC	GRCh37	X	48650332	48650332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	169	371	1	ENST00000376670.3:c.302C>A	p.Thr101Lys	p.T101K	ENST00000376670	NM_002049.3	101	aCg/aAg																																																																														
AMER1	0	MSKCC	GRCh37	X	63410354	63410354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	124	478	0	ENST00000330258.3:c.2813G>C	p.Gly938Ala	p.G938A	ENST00000330258	NM_152424.3	938	gGa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0018196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	508	816	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0018196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	473	749	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056406	26056406	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	56	363	0	ENST00000343677.2:c.251T>C	p.Leu84Pro	p.L84P	ENST00000343677	NM_005319.3	84	cTc/cCc																																																																														
CYLD	0	MSKCC	GRCh37	16	50811826	50811826	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	146	750	0	ENST00000398568.2:c.1103C>A	p.Ser368Ter	p.S368*	ENST00000398568	NM_001042412.1	368	tCa/tAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47144879	47144879	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	105	628	0	ENST00000409792.3:c.4874G>C	p.Arg1625Pro	p.R1625P	ENST00000409792	NM_014159.6	1625	cGt/cCt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151864391	151864392	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	113	590	0	ENST00000262189.6:c.9589dupT	p.Tyr3197LeufsTer3	p.Y3197Lfs*3	ENST00000262189	NM_170606.2	3197	tat/tTat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	249	668	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	49	582	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																														
RBM10	0	MSKCC	GRCh37	X	47044550	47044550	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	82	846	1	ENST00000329236.7:c.1813G>T	p.Glu605Ter	p.E605*	ENST00000329236	NM_001204466.1	605	Gag/Tag																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439798	51439798	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	40	313	0	ENST00000262662.1:c.364delC	p.Leu122TrpfsTer2	p.L122Wfs*2	ENST00000262662		121	ttC/tt																																																																														
RASA1	0	MSKCC	GRCh37	5	86685312	86685312	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	30	196	0	ENST00000274376.6:c.3028C>T	p.Arg1010Ter	p.R1010*	ENST00000274376	NM_002890.2	1010	Cga/Tga																																																																														
DDR2	0	MSKCC	GRCh37	1	162741901	162741901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	51	454	0	ENST00000367921.3:c.1592G>T	p.Gly531Val	p.G531V	ENST00000367921	NM_006182.2	531	gGa/gTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578380	7578380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs72661117		P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	44	531	0	ENST00000269305.4:c.550G>A	p.Asp184Asn	p.D184N	ENST00000269305	NM_001126112.2	184	Gat/Aat																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467933	66467934	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	51	534	0	ENST00000273854.3:c.335_336delGGinsTT	p.Trp112Phe	p.W112F	ENST00000273854	NM_004439.5	112	tGG/tTT																																																																														
RASA1	0	MSKCC	GRCh37	5	86685339	86685339	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	27	145	0	ENST00000274376.6:c.3055C>T	p.Gln1019Ter	p.Q1019*	ENST00000274376	NM_002890.2	1019	Cag/Tag																																																																														
SESN1	0	MSKCC	GRCh37	6	109314097	109314097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	92	628	0	ENST00000436639.2:c.1126G>A	p.Glu376Lys	p.E376K	ENST00000436639	NM_014454.2	376	Gaa/Aaa																																																																														
RXRA	0	MSKCC	GRCh37	9	137309018	137309018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	107	769	0	ENST00000481739.1:c.625C>G	p.Arg209Gly	p.R209G	ENST00000481739	NM_002957.4	209	Cgg/Ggg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	211	432	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
CIC	0	MSKCC	GRCh37	19	42799299	42799300	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	53	404	0	ENST00000575354.2:c.4790dupC	p.Pro1598ThrfsTer16	p.P1598Tfs*16	ENST00000575354	NM_015125.3	1595	tcc/tCcc																																																																														
BCOR	54880	MSKCC	GRCh37	X	39913252	39913253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs797044647		P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	101	668	0	ENST00000378444.4:c.4862dup	p.Gly1622ArgfsTer7	p.G1622Rfs*7	ENST00000378444	NM_001123385.1	1621	cca/ccCa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	108	553	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532653	63532654	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	145	658	0	ENST00000307078.5:c.1925dupA	p.Ala643GlyfsTer64	p.A643Gfs*64	ENST00000307078	NM_004655.3	642	aag/aaAg																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	10274172	10274173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	108	475	0	ENST00000330684.3:c.96dup	p.Ala33ArgfsTer105	p.A33Rfs*105	ENST00000330684	NM_001134407.1	32	-/C																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	59	651	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	117	624	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157528825	157528825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	102	540	0	ENST00000346085.5:c.6554del	p.Pro2185ArgfsTer8	p.P2185Rfs*8	ENST00000346085	NM_020732.3	2184	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023769	27023769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	120	538	0	ENST00000324856.7:c.879del	p.Thr294ProfsTer69	p.T294Pfs*69	ENST00000324856	NM_006015.4	292	aCc/ac																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23539105	23539105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	221	587	0	ENST00000380871.4:c.334G>A	p.Ala112Thr	p.A112T	ENST00000380871	NM_006167.3	112	Gcc/Acc																																																																														
TCF3	0	MSKCC	GRCh37	19	1627375	1627375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	156	755	1	ENST00000344749.5:c.349G>A	p.Val117Met	p.V117M	ENST00000344749	NM_001136139.2	117	Gtg/Atg																																																																														
POLD1	0	MSKCC	GRCh37	19	50918759	50918759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	181	794	0	ENST00000440232.2:c.2629G>A	p.Asp877Asn	p.D877N	ENST00000440232	NM_002691.3	877	Gat/Aat																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31376726	31376726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	29	377	2	ENST00000328111.2:c.721G>A	p.Ala241Thr	p.A241T	ENST00000328111	NM_006892.3	241	Gcc/Acc																																																																														
FLT4	0	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	91	705	0	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88659789	88659789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	50	576	0	ENST00000372037.3:c.441delT	p.Phe147LeufsTer18	p.F147Lfs*18	ENST00000372037	NM_004329.2	146	Ttt/tt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088659	27088659	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	169	828	0	ENST00000324856.7:c.2272delC	p.Gln758ArgfsTer75	p.Q758Rfs*75	ENST00000324856	NM_006015.4	756	aaC/aa																																																																														
ATM	0	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	100	528	1	ENST00000278616.4:c.6908dupA	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24134056	24134057	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	164	806	0	ENST00000263121.7:c.214dupA	p.Thr72AsnfsTer4	p.T72Nfs*4	ENST00000263121	NM_003073.3	69	-/A																																																																														
HNF1A	0	MSKCC	GRCh37	12	121432071	121432073	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	150	762	0	ENST00000257555.6:c.824_826delAAG	p.Glu275del	p.E275del	ENST00000257555		273	aAAGaa/aaa																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	208	852	4	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																														
TET2	0	MSKCC	GRCh37	4	106193974	106193974	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	34	464	0	ENST00000380013.4:c.4436T>C	p.Leu1479Pro	p.L1479P	ENST00000380013	NM_001127208.2	1479	cTt/cCt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9786991	9786993	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	133	603	0	ENST00000377346.4:c.3029_3031delAGG	p.Glu1010del	p.E1010del	ENST00000377346	NM_005026.3	1008	GAG/-																																																																														
SPEN	0	MSKCC	GRCh37	1	16259564	16259564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	38	646	0	ENST00000375759.3:c.6829G>A	p.Ala2277Thr	p.A2277T	ENST00000375759	NM_015001.2	2277	Gct/Act																																																																														
SPEN	0	MSKCC	GRCh37	1	16261707	16261707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	140	679	2	ENST00000375759.3:c.8972C>T	p.Pro2991Leu	p.P2991L	ENST00000375759	NM_015001.2	2991	cCc/cTc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120480045	120480045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	119	619	0	ENST00000256646.2:c.3382A>G	p.Asn1128Asp	p.N1128D	ENST00000256646	NM_024408.3	1128	Aat/Gat																																																																														
DDR2	0	MSKCC	GRCh37	1	162741879	162741879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	99	466	0	ENST00000367921.3:c.1570G>A	p.Ala524Thr	p.A524T	ENST00000367921	NM_006182.2	524	Gct/Act																																																																														
PTEN	0	MSKCC	GRCh37	10	89720866	89720866	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	190	459	0	ENST00000371953.3:c.1019delA	p.Asn340IlefsTer4	p.N340Ifs*4	ENST00000371953	NM_000314.4	339	ccA/cc																																																																														
ATM	0	MSKCC	GRCh37	11	108199944	108199944	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	79	448	0	ENST00000278616.4:c.7286A>G	p.Glu2429Gly	p.E2429G	ENST00000278616	NM_000051.3	2429	gAa/gGa																																																																														
ETV6	0	MSKCC	GRCh37	12	12006403	12006403	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	112	636	0	ENST00000396373.4:c.371G>T	p.Arg124Met	p.R124M	ENST00000396373	NM_001987.4	124	aGg/aTg																																																																														
RECQL	0	MSKCC	GRCh37	12	21630786	21630786	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	143	721	0	ENST00000421138.2:c.818delA	p.Lys273SerfsTer33	p.K273Sfs*33	ENST00000421138		273	aAg/ag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445040	49445041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	80	546	0	ENST00000301067.7:c.2425dupC	p.Gln809ProfsTer3	p.Q809Pfs*3	ENST00000301067	NM_003482.3	809	cag/cCag																																																																														
RB1	0	MSKCC	GRCh37	13	49039504	49039504	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	101	551	0	ENST00000267163.4:c.2489G>T	p.Arg830Ile	p.R830I	ENST00000267163	NM_000321.2	830	aGa/aTa																																																																														
IRS2	0	MSKCC	GRCh37	13	110436003	110436003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	81	813	1	ENST00000375856.3:c.2398G>T	p.Gly800Cys	p.G800C	ENST00000375856	NM_003749.2	800	Ggc/Tgc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30100133	30100133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	90	786	0	ENST00000331968.5:c.1487C>T	p.Thr496Met	p.T496M	ENST00000331968	NM_002742.2	496	aCg/aTg																																																																														
MGA	0	MSKCC	GRCh37	15	42032268	42032268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	146	741	1	ENST00000219905.7:c.4452G>T	p.Lys1484Asn	p.K1484N	ENST00000219905	NM_001164273.1	1484	aaG/aaT																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457611	67457611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	119	653	0	ENST00000327367.4:c.421C>G	p.Pro141Ala	p.P141A	ENST00000327367	NM_005902.3	141	Cca/Gca																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817889	3817889	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	143	638	1	ENST00000262367.5:c.3082G>T	p.Gly1028Ter	p.G1028*	ENST00000262367	NM_004380.2	1028	Gga/Tga																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7976521	7976521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	101	567	0	ENST00000319144.4:c.1871C>T	p.Thr624Ile	p.T624I	ENST00000319144	NM_001139.2	624	aCc/aTc																																																																														
EZH1	0	MSKCC	GRCh37	17	40879741	40879742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	54	748	0	ENST00000428826.2:c.157dupA	p.Thr53AsnfsTer6	p.T53Nfs*6	ENST00000428826		53	acc/aAcc																																																																														
RAD51C	0	MSKCC	GRCh37	17	56811478	56811478	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	89	461	0	ENST00000337432.4:c.1027-1G>A		p.X343_splice	ENST00000337432	NM_058216.2	343																																																																															
BRIP1	0	MSKCC	GRCh37	17	59853840	59853840	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	43	696	0	ENST00000259008.2:c.2019A>T	p.Gln673His	p.Q673H	ENST00000259008	NM_032043.2	673	caA/caT																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573625	48573625	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	68	537	0	ENST00000342988.3:c.209A>C	p.Lys70Thr	p.K70T	ENST00000342988	NM_005359.5	70	aAa/aCa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226625	2226625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	153	677	0	ENST00000398665.3:c.4105A>G	p.Ser1369Gly	p.S1369G	ENST00000398665	NM_032482.2	1369	Agc/Ggc																																																																														
CARM1	0	MSKCC	GRCh37	19	11032060	11032060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	145	644	4	ENST00000327064.4:c.1625G>T	p.Gly542Val	p.G542V	ENST00000327064	NM_199141.1	542	gGg/gTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098561	11098561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	208	736	2	ENST00000344626.4:c.1079G>A	p.Gly360Asp	p.G360D	ENST00000344626	NM_003072.3	360	gGc/gAc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213270	36213270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	129	650	0	ENST00000222270.7:c.2467G>A	p.Gly823Arg	p.G823R	ENST00000222270	NM_014727.1	823	Gga/Aga																																																																														
KMT2B	0	MSKCC	GRCh37	19	36217254	36217254	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	105	656	0	ENST00000222270.7:c.4003G>A	p.Gly1335Arg	p.G1335R	ENST00000222270	NM_014727.1	1335	Gga/Aga																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919865	50919866	+	splice_acceptor_variant	Splice_Site	INS	-	-	G	rs756872503		P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	115	633	2	ENST00000440232.2:c.2959dup		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
ASXL2	0	MSKCC	GRCh37	2	25994392	25994392	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	86	414	0	ENST00000435504.4:c.421C>T	p.Gln141Ter	p.Q141*	ENST00000435504		141	Cag/Tag																																																																														
SOS1	0	MSKCC	GRCh37	2	39241056	39241056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	122	685	1	ENST00000402219.2:c.2015C>T	p.Ala672Val	p.A672V	ENST00000402219	NM_005633.3	672	gCa/gTa																																																																														
MSH2	0	MSKCC	GRCh37	2	47630490	47630490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	147	729	0	ENST00000233146.2:c.160G>A	p.Ala54Thr	p.A54T	ENST00000233146	NM_000251.2	54	Gcc/Acc																																																																														
MSH6	0	MSKCC	GRCh37	2	48033402	48033402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	78	656	2	ENST00000234420.5:c.3706G>A	p.Ala1236Thr	p.A1236T	ENST00000234420	NM_000179.2	1236	Gct/Act																																																																														
REL	0	MSKCC	GRCh37	2	61128157	61128158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	96	551	0	ENST00000295025.8:c.339dupA	p.Glu114ArgfsTer21	p.E114Rfs*21	ENST00000295025	NM_002908.2	111	-/A																																																																														
INPP4A	0	MSKCC	GRCh37	2	99163099	99163099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	65	716	0	ENST00000074304.5:c.1105G>A	p.Gly369Ser	p.G369S	ENST00000074304	NM_001134224.1	369	Ggt/Agt																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111921712	111921713	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	78	379	0	ENST00000393256.3:c.506dupT	p.Leu169PhefsTer3	p.L169Ffs*3	ENST00000393256	NM_006538.4	167	-/T																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266175	198266175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	134	595	2	ENST00000335508.6:c.2445delT	p.Phe815LeufsTer19	p.F815Lfs*19	ENST00000335508	NM_012433.2	815	ttT/tt																																																																														
CASP8	0	MSKCC	GRCh37	2	202131490	202131490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	115	593	1	ENST00000358485.4:c.458G>A	p.Gly153Asp	p.G153D	ENST00000358485	NM_001080125.1	153	gGc/gAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40979269	40979269	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	70	466	0	ENST00000373198.4:c.1864A>G	p.Ser622Gly	p.S622G	ENST00000373198	NM_133170.3	622	Agt/Ggt																																																																														
MYD88	0	MSKCC	GRCh37	3	38182626	38182626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	58	305	0	ENST00000396334.3:c.779C>T	p.Ala260Val	p.A260V	ENST00000396334	NM_002468.4	260	gCc/gTc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390218	89390218	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	81	418	0	ENST00000336596.2:c.967A>G	p.Thr323Ala	p.T323A	ENST00000336596	NM_005233.5	323	Acc/Gcc																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41747835	41747835	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	127	430	0	ENST00000226382.2:c.934A>G	p.Ser312Gly	p.S312G	ENST00000226382	NM_003924.3	312	Agt/Ggt																																																																														
IL7R	0	MSKCC	GRCh37	5	35867409	35867409	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	27	485	0	ENST00000303115.3:c.226delG	p.Ala76ProfsTer5	p.A76Pfs*5	ENST00000303115	NM_002185.3	75	Ggg/gg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589576	67589593	+	inframe_deletion	In_Frame_Del	DEL	AAAAAATTACATGAATAT	AAAAAATTACATGAATAT	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	60	471	0	ENST00000274335.5:c.1341_1358delAAAATTACATGAATATAA	p.Lys447_Tyr452del	p.K447_Y452del	ENST00000274335		447	AAAAAATTACATGAATAT/-																																																																														
RASA1	0	MSKCC	GRCh37	5	86667958	86667959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	84	468	0	ENST00000274376.6:c.1726dupT	p.Cys576LeufsTer7	p.C576Lfs*7	ENST00000274376	NM_002890.2	574	-/T																																																																														
E2F3	0	MSKCC	GRCh37	6	20402586	20402586	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	83	391	0	ENST00000346618.3:c.126delC	p.Gly43AlafsTer37	p.G43Afs*37	ENST00000346618	NM_001949.4	41	agC/ag																																																																														
BRAF	0	MSKCC	GRCh37	7	140500161	140500161	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	69	872	1	ENST00000288602.6:c.980+1delG		p.X327_splice	ENST00000288602	NM_004333.4	327																																																																															
KMT2C	0	MSKCC	GRCh37	7	151853352	151853352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	103	532	0	ENST00000262189.6:c.11750C>T	p.Ala3917Val	p.A3917V	ENST00000262189	NM_170606.2	3917	gCc/gTc																																																																														
DUSP4	0	MSKCC	GRCh37	8	29207603	29207603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	62	653	1	ENST00000240100.2:c.193G>A	p.Val65Ile	p.V65I	ENST00000240100	NM_001394.6	65	Gtc/Atc																																																																														
TSC1	0	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	63	551	0	ENST00000298552.3:c.2671_2672dupAA	p.Asn891LysfsTer41	p.N891Kfs*41	ENST00000298552	NM_001162426.1	891	aac/aaAAc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929539	44929539	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	53	639	0	ENST00000377967.4:c.2639A>G	p.Gln880Arg	p.Q880R	ENST00000377967	NM_021140.2	880	cAg/cGg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949995	44949995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	27	586	0	ENST00000377967.4:c.3764G>T	p.Arg1255Leu	p.R1255L	ENST00000377967	NM_021140.2	1255	cGg/cTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	32	673	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0018205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	840	714	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986625	36986629	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGC	CCTGC	-			P-0018205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	96	260	0	ENST00000354822.5:c.1060_1064delGCAGG	p.Ala354ProfsTer83	p.A354Pfs*83	ENST00000354822	NM_001079668.2	354	GCAGGc/c																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127442	55127442	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	147	775	0	ENST00000257290.5:c.230A>G	p.Asn77Ser	p.N77S	ENST00000257290	NM_006206.4	77	aAc/aGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	434	835	2	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																														
RB1	0	MSKCC	GRCh37	13	48916768	48916768	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	68	646	4	ENST00000267163.4:c.298G>T	p.Gly100Ter	p.G100*	ENST00000267163	NM_000321.2	100	Gga/Tga																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15289955	15289955	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	249	771	2	ENST00000263388.2:c.3599T>A	p.Leu1200Ter	p.L1200*	ENST00000263388	NM_000435.2	1200	tTg/tAg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508444	106508444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	10	215	0	ENST00000359195.3:c.438G>T	p.Glu146Asp	p.E146D	ENST00000359195	NM_002649.2	146	gaG/gaT																																																																														
PREX2	0	MSKCC	GRCh37	8	69104006	69104006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	74	814	1	ENST00000288368.4:c.4396G>A	p.Ala1466Thr	p.A1466T	ENST00000288368	NM_024870.2	1466	Gct/Act																																																																														
AMER1	0	MSKCC	GRCh37	X	63412683	63412683	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	140	648	0	ENST00000330258.3:c.484A>T	p.Met162Leu	p.M162L	ENST00000330258	NM_152424.3	162	Atg/Ttg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	165	757	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	90	605	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
BRD4	0	MSKCC	GRCh37	19	15350291	15350291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	97	631	1	ENST00000263377.2:c.3488G>A	p.Arg1163Gln	p.R1163Q	ENST00000263377	NM_058243.2	1163	cGg/cAg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52685769	52685769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	80	707	0	ENST00000394830.3:c.703delC	p.Gln235ArgfsTer18	p.Q235Rfs*18	ENST00000394830	NM_018313.4	235	Cag/ag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094373	27094374	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGGC			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	78	537	0	ENST00000324856.7:c.3084_3088dupGGCCT	p.Phe1030TrpfsTer11	p.F1030Wfs*11	ENST00000324856	NM_006015.4	1027	-/CTGGC																																																																														
RET	0	MSKCC	GRCh37	10	43612095	43612095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	76	607	1	ENST00000355710.3:c.2200G>A	p.Glu734Lys	p.E734K	ENST00000355710	NM_020975.4	734	Gaa/Aaa																																																																														
MGA	0	MSKCC	GRCh37	15	42041696	42041696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	40	600	0	ENST00000219905.7:c.5891C>A	p.Ala1964Asp	p.A1964D	ENST00000219905	NM_001164273.1	1964	gCt/gAt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678584	88678584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	32	330	0	ENST00000360948.2:c.952G>A	p.Glu318Lys	p.E318K	ENST00000360948	NM_001012338.2	318	Gag/Aag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970917	21970917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	85	818	0	ENST00000304494.5:c.441delC	p.Ala148ArgfsTer45	p.A148Rfs*45	ENST00000304494	NM_000077.4	147	gcC/gc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970917	21970917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018210-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	85	818	0	ENST00000304494.5:c.441delC	p.Ala148ArgfsTer45	p.A148Rfs*45	ENST00000304494	NM_000077.4	147	gcC/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	39	594	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	43	576	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967255	134967255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	39	666	1	ENST00000398015.3:c.2594G>A	p.Arg865Gln	p.R865Q	ENST00000398015	NM_004441.4	865	cGg/cAg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56174871	56174872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	67	653	0	ENST00000399503.3:c.2031dupG	p.Arg678GlufsTer19	p.R678Efs*19	ENST00000399503	NM_005921.1	677	cag/caGg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945451	151945451	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	71	942	0	ENST00000262189.6:c.2068G>T	p.Glu690Ter	p.E690*	ENST00000262189	NM_170606.2	690	Gaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	39	382	1	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66523994	66523994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	31	315	0	ENST00000358598.2:c.722G>A	p.Arg241Lys	p.R241K	ENST00000358598	NM_212471.2	241	aGa/aAa																																																																														
SPEN	0	MSKCC	GRCh37	1	16235910	16235910	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	85	758	0	ENST00000375759.3:c.976C>G	p.Leu326Val	p.L326V	ENST00000375759	NM_015001.2	326	Ctg/Gtg																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195575	102195575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	95	795	0	ENST00000263464.3:c.335C>G	p.Thr112Ser	p.T112S	ENST00000263464	NM_001165.4	112	aCt/aGt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112342	115112342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	27	334	0	ENST00000257566.3:c.1398G>T	p.Lys466Asn	p.K466N	ENST00000257566	NM_016569.3	466	aaG/aaT																																																																														
IRS2	0	MSKCC	GRCh37	13	110435424	110435424	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	86	749	1	ENST00000375856.3:c.2977G>T	p.Ala993Ser	p.A993S	ENST00000375856	NM_003749.2	993	Gcc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7579698	7579698	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0018214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	155	718	0	ENST00000269305.4:c.96+2T>G		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
APC	0	MSKCC	GRCh37	5	112157672	112157673	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0018214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	87	525	0	ENST00000257430.4:c.1393_1394insAG	p.Ala465GlufsTer3	p.A465Efs*3	ENST00000257430	NM_000038.5	464	-/GA																																																																														
XRCC2	0	MSKCC	GRCh37	7	152357831	152357831	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	62	735	1	ENST00000359321.1:c.76G>T	p.Glu26Ter	p.E26*	ENST00000359321	NM_005431.1	26	Gaa/Taa																																																																														
MED12	0	MSKCC	GRCh37	X	70349189	70349189	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	61	643	0	ENST00000374080.3:c.3601T>G	p.Ser1201Ala	p.S1201A	ENST00000374080		1201	Tcc/Gcc																																																																														
ATRX	0	MSKCC	GRCh37	X	76888817	76888817	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	88	816	0	ENST00000373344.5:c.5012G>C	p.Arg1671Thr	p.R1671T	ENST00000373344	NM_000489.3	1671	aGg/aCg																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073739	8073739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	64	346	0	ENST00000377482.5:c.920C>T	p.Ser307Leu	p.S307L	ENST00000377482	NM_018948.3	307	tCg/tTg																																																																														
ELF3	0	MSKCC	GRCh37	1	201982163	201982164	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0018216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	42	634	0	ENST00000359651.3:c.688+1dupG		p.-229fs	ENST00000359651		229	-/G																																																																														
GATA3	0	MSKCC	GRCh37	10	8100297	8100297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	61	705	1	ENST00000346208.3:c.271C>T	p.His91Tyr	p.H91Y	ENST00000346208		91	Cat/Tat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445179	49445179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	74	798	0	ENST00000301067.7:c.2287C>T	p.Pro763Ser	p.P763S	ENST00000301067	NM_003482.3	763	Ccg/Tcg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445959	49445959	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	108	987	0	ENST00000301067.7:c.1507C>G	p.Leu503Val	p.L503V	ENST00000301067	NM_003482.3	503	Ctg/Gtg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15935668	15935668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	70	401	0	ENST00000268712.3:c.7265G>A	p.Arg2422Gln	p.R2422Q	ENST00000268712	NM_006311.3	2422	cGa/cAa																																																																														
MLH1	0	MSKCC	GRCh37	3	37067138	37067138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	71	330	0	ENST00000231790.2:c.1049C>T	p.Pro350Leu	p.P350L	ENST00000231790	NM_000249.3	350	cCa/cTa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71096153	71096153	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	48	396	3	ENST00000318789.4:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000318789	NM_032682.5	202	Caa/Taa																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651963	36651963	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	104	588	2	ENST00000244741.5:c.85C>T	p.Gln29Ter	p.Q29*	ENST00000244741	NM_000389.4	29	Cag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151902215	151902215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	45	651	0	ENST00000262189.6:c.3937G>A	p.Glu1313Lys	p.E1313K	ENST00000262189	NM_170606.2	1313	Gag/Aag																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	43	571	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727454	66727454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	9	490	0	ENST00000307102.5:c.170A>C	p.Lys57Thr	p.K57T	ENST00000307102	NM_002755.3	57	aAg/aCg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72984375	72984375	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	123	415	0	ENST00000268489.5:c.3209T>A	p.Leu1070Ter	p.L1070*	ENST00000268489	NM_006885.3	1070	tTg/tAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	312	891	4	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	336	914	3	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247243	153247243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	341	827	0	ENST00000281708.4:c.1559A>G	p.Asp520Gly	p.D520G	ENST00000281708	NM_033632.3	520	gAt/gGt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	337	1011	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	173	538	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101179	41101179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	153	878	1	ENST00000373198.4:c.1177G>A	p.Val393Met	p.V393M	ENST00000373198	NM_133170.3	393	Gtg/Atg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249507	153249507	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	171	921	0	ENST00000281708.4:c.1271delT	p.Val424AspfsTer6	p.V424Dfs*6	ENST00000281708	NM_033632.3	424	gTa/ga																																																																														
APC	0	MSKCC	GRCh37	5	112170747	112170747	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	301	830	0	ENST00000257430.4:c.1847delT	p.Leu616TrpfsTer14	p.L616Wfs*14	ENST00000257430	NM_000038.5	615	Ttt/tt																																																																														
PREX2	0	MSKCC	GRCh37	8	68956723	68956723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	457	773	0	ENST00000288368.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000288368	NM_024870.2	281	Cgg/Tgg																																																																														
PREX2	0	MSKCC	GRCh37	8	69031730	69031730	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	185	946	0	ENST00000288368.4:c.3485T>G	p.Leu1162Arg	p.L1162R	ENST00000288368	NM_024870.2	1162	cTt/cGt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830864	72830864	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	225	706	0	ENST00000268489.5:c.5717delA	p.Lys1906ArgfsTer8	p.K1906Rfs*8	ENST00000268489	NM_006885.3	1906	aAg/ag																																																																														
MYC	0	MSKCC	GRCh37	8	128752679	128752681	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0018221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	119	430	0	ENST00000377970.2:c.841_843delTCT	p.Ser281del	p.S281del	ENST00000377970	NM_002467.4	280	gtTTCt/gtt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099977	157099977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	140	376	0	ENST00000346085.5:c.914G>A	p.Gly305Asp	p.G305D	ENST00000346085	NM_020732.3	305	gGc/gAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	234	594	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	31	479	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	209	573	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	262	634	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716212	52716212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	197	520	0	ENST00000322088.6:c.656C>T	p.Ser219Leu	p.S219L	ENST00000322088	NM_014225.5	219	tCg/tTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	145	622	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	173	465	2	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591259	67591259	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	27	605	0	ENST00000274335.5:c.1761delA	p.Gly588ValfsTer7	p.G588Vfs*7	ENST00000274335		586	cAa/ca																																																																														
RB1	5925	MSKCC	GRCh37	13	48881488	48881489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	279	425	0	ENST00000267163.4:c.219_220dup	p.Ala74GlufsTer4	p.A74Efs*4	ENST00000267163	NM_000321.2	70	-/AG																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	164	782	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100299	27100302	+	frameshift_variant	Frame_Shift_Del	DEL	TTCC	TTCC	-			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	284	833	0	ENST00000324856.7:c.4012_4015delTCCT	p.Ser1338MetfsTer142	p.S1338Mfs*142	ENST00000324856	NM_006015.4	1337	gaTTCC/ga																																																																														
CSDE1	0	MSKCC	GRCh37	1	115272956	115272956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	255	823	0	ENST00000438362.2:c.1417C>T	p.Arg473Cys	p.R473C	ENST00000438362	NM_001242891.1	473	Cgt/Tgt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156846288	156846288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	284	762	1	ENST00000524377.1:c.1729G>A	p.Gly577Ser	p.G577S	ENST00000524377	NM_002529.3	577	Ggc/Agc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711950	89711950	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	366	558	0	ENST00000371953.3:c.569delC	p.Pro190GlnfsTer9	p.P190Qfs*9	ENST00000371953	NM_000314.4	190	Cca/ca																																																																														
ETV6	0	MSKCC	GRCh37	12	12006377	12006377	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	176	516	0	ENST00000396373.4:c.345A>T	p.Glu115Asp	p.E115D	ENST00000396373	NM_001987.4	115	gaA/gaT																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43773164	43773164	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	238	835	0	ENST00000382044.4:c.428A>G	p.Glu143Gly	p.E143G	ENST00000382044	NM_001141980.1	143	gAg/gGg																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729175	66729175	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	253	707	0	ENST00000307102.5:c.383G>C	p.Gly128Ala	p.G128A	ENST00000307102	NM_002755.3	128	gGc/gCc																																																																														
CDH1	0	MSKCC	GRCh37	16	68857476	68857476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	124	684	0	ENST00000261769.5:c.2111G>T	p.Gly704Val	p.G704V	ENST00000261769	NM_004360.3	704	gGa/gTa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36229011	36229011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	297	711	2	ENST00000222270.7:c.7795delG	p.Glu2599ArgfsTer15	p.E2599Rfs*15	ENST00000222270	NM_014727.1	2597	gcG/gc																																																																														
CIC	0	MSKCC	GRCh37	19	42794617	42794617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	247	781	2	ENST00000575354.2:c.1697G>A	p.Ser566Asn	p.S566N	ENST00000575354	NM_015125.3	566	aGc/aAc																																																																														
RRAS	0	MSKCC	GRCh37	19	50138997	50138998	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	389	888	0	ENST00000246792.3:c.565dupG	p.Ala189GlyfsTer120	p.A189Gfs*120	ENST00000246792	NM_006270.3	189	gct/gGct																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713713	30713713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	170	481	0	ENST00000359013.4:c.1113C>A	p.Asp371Glu	p.D371E	ENST00000359013	NM_001024847.2	371	gaC/gaA																																																																														
TET2	0	MSKCC	GRCh37	4	106157804	106157804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	142	412	1	ENST00000380013.4:c.2705G>T	p.Arg902Ile	p.R902I	ENST00000380013	NM_001127208.2	902	aGa/aTa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56183297	56183297	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	191	655	2	ENST00000399503.3:c.4207G>T	p.Gly1403Ter	p.G1403*	ENST00000399503	NM_005921.1	1403	Gga/Tga																																																																														
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0018225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	246	795	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395108	139395108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	12	675	1	ENST00000277541.6:c.5830G>A	p.Ala1944Thr	p.A1944T	ENST00000277541	NM_017617.3	1944	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	94	844	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	106	895	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
FLT3	0	MSKCC	GRCh37	13	28602333	28602333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	27	637	0	ENST00000241453.7:c.2035G>T	p.Gly679Trp	p.G679W	ENST00000241453	NM_004119.2	679	Ggg/Tgg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603147	48603147	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	68	619	0	ENST00000342988.3:c.1447+1G>T		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	60	832	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	24	786	3	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0018230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	40	900	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	31	643	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922363	178922363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	23	625	0	ENST00000263967.3:c.1132T>C	p.Cys378Arg	p.C378R	ENST00000263967	NM_006218.2	378	Tgt/Cgt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41276092	41276092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	45	782	0	ENST00000357654.3:c.22G>A	p.Val8Ile	p.V8I	ENST00000357654	NM_007294.3	8	Gtt/Att																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520171	176520171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	51	928	0	ENST00000292408.4:c.1090G>A	p.Glu364Lys	p.E364K	ENST00000292408	NM_213647.1	364	Gag/Aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89692780	89692780	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	34	705	0	ENST00000371953.3:c.264T>G	p.Tyr88Ter	p.Y88*	ENST00000371953	NM_000314.4	88	taT/taG																																																																														
SUFU	0	MSKCC	GRCh37	10	104375135	104375135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	107	816	1	ENST00000369902.3:c.1133G>A	p.Gly378Glu	p.G378E	ENST00000369902	NM_016169.3	378	gGa/gAa																																																																														
PGR	0	MSKCC	GRCh37	11	100999331	100999366	+	inframe_deletion	In_Frame_Del	DEL	GGTGGCGGGGGCAGCCGGTGGATCTTCGGGAAGTTC	GGTGGCGGGGGCAGCCGGTGGATCTTCGGGAAGTTC	-			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	165	1082	0	ENST00000325455.5:c.436_471delGAACTTCCCGAAGATCCACCGGCTGCCCCCGCCACC	p.Glu146_Thr157del	p.E146_T157del	ENST00000325455	NM_001202474.3	146	GAACTTCCCGAAGATCCACCGGCTGCCCCCGCCACC/-																																																																														
MGA	0	MSKCC	GRCh37	15	42042496	42042496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	81	867	1	ENST00000219905.7:c.6691A>G	p.Thr2231Ala	p.T2231A	ENST00000219905	NM_001164273.1	2231	Act/Gct																																																																														
TRAF7	0	MSKCC	GRCh37	16	2226278	2226278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	75	899	0	ENST00000326181.6:c.1891G>A	p.Asp631Asn	p.D631N	ENST00000326181	NM_032271.2	631	Gac/Aac																																																																														
SLX4	0	MSKCC	GRCh37	16	3647379	3647379	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	56	517	0	ENST00000294008.3:c.1683+1G>A		p.X561_splice	ENST00000294008	NM_032444.2	561																																																																															
ZFHX3	0	MSKCC	GRCh37	16	72822225	72822225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	119	970	1	ENST00000268489.5:c.9950C>T	p.Pro3317Leu	p.P3317L	ENST00000268489	NM_006885.3	3317	cCt/cTt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983805	15983805	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	141	775	0	ENST00000268712.3:c.3317A>G	p.Lys1106Arg	p.K1106R	ENST00000268712	NM_006311.3	1106	aAg/aGg																																																																														
RNF43	0	MSKCC	GRCh37	17	56448312	56448312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	122	868	0	ENST00000407977.2:c.335C>T	p.Pro112Leu	p.P112L	ENST00000407977		112	cCt/cTt																																																																														
JAK3	0	MSKCC	GRCh37	19	17945794	17945794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	105	804	0	ENST00000458235.1:c.2066C>T	p.Pro689Leu	p.P689L	ENST00000458235	NM_000215.3	689	cCc/cTc																																																																														
SETD2	0	MSKCC	GRCh37	3	47058698	47058698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	106	881	1	ENST00000409792.3:c.7580C>T	p.Pro2527Leu	p.P2527L	ENST00000409792	NM_014159.6	2527	cCt/cTt																																																																														
FLT4	0	MSKCC	GRCh37	5	180045922	180045922	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	65	506	0	ENST00000261937.6:c.2851-2A>G		p.X951_splice	ENST00000261937	NM_182925.4	951																																																																															
DAXX	0	MSKCC	GRCh37	6	33287542	33287542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	137	887	0	ENST00000374542.5:c.1555G>A	p.Gly519Arg	p.G519R	ENST00000374542	NM_001141970.1	519	Ggg/Agg																																																																														
DAXX	0	MSKCC	GRCh37	6	33288630	33288630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	215	537	0	ENST00000374542.5:c.922C>T	p.Gln308Ter	p.Q308*	ENST00000374542	NM_001141970.1	308	Cag/Tag																																																																														
LATS1	0	MSKCC	GRCh37	6	150004754	150004754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	96	655	0	ENST00000253339.5:c.1471C>T	p.Pro491Ser	p.P491S	ENST00000253339		491	Cca/Tca																																																																														
MEN1	0	MSKCC	GRCh37	11	64574483	64574498	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	CTTGTGGTAGAGGGTG	CTTGTGGTAGAGGGTG	A			P-0018232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	319	782	0	ENST00000337652.1:c.912_927delCACCCTCTACCACAAGinsT	p.Thr305_Lys309del	p.T305_K309del	ENST00000337652	NM_130803.2	304	ctCACCCTCTACCACAAG/ctT																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0018233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	656	738	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	166	678	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18716344	18716344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	169	678	3	ENST00000266497.5:c.3691G>A	p.Glu1231Lys	p.E1231K	ENST00000266497		1231	Gaa/Aaa																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166268	118166268	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	67	486	0	ENST00000369448.3:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000369448	NM_017709.3	260	Cag/Tag																																																																														
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0018233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	187	511	4				ENST00000310581	NM_198253.2																																																																																
CSDE1	0	MSKCC	GRCh37	1	115276442	115276442	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	88	664	2	ENST00000438362.2:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000438362	NM_001242891.1	296	Caa/Taa																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39584482	39584482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	61	392	0	ENST00000262039.4:c.1147C>G	p.Arg383Gly	p.R383G	ENST00000262039	NM_002647.2	383	Cgg/Ggg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178097983	178097983	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	211	581	0	ENST00000397062.3:c.397A>T	p.Asn133Tyr	p.N133Y	ENST00000397062	NM_006164.4	133	Aat/Tat																																																																														
PMS1	0	MSKCC	GRCh37	2	190719245	190719245	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	137	476	0	ENST00000441310.2:c.1247T>G	p.Phe416Cys	p.F416C	ENST00000441310	NM_000534.4	416	tTt/tGt																																																																														
TET2	0	MSKCC	GRCh37	4	106157380	106157380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	114	613	1	ENST00000380013.4:c.2281C>T	p.Pro761Ser	p.P761S	ENST00000380013	NM_001127208.2	761	Cct/Tct																																																																														
AGO2	0	MSKCC	GRCh37	8	141570521	141570521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	237	884	0	ENST00000220592.5:c.607C>T	p.His203Tyr	p.H203Y	ENST00000220592	NM_012154.3	203	Cat/Tat																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223006	53223006	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	206	364	0	ENST00000375401.3:c.4066A>T	p.Ser1356Cys	p.S1356C	ENST00000375401	NM_004187.3	1356	Agt/Tgt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	108	605	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	144	629	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa																																																																														
MTOR	0	MSKCC	GRCh37	1	11182146	11182146	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	150	788	0	ENST00000361445.4:c.6700T>C	p.Ser2234Pro	p.S2234P	ENST00000361445	NM_004958.3	2234	Tcg/Ccg																																																																														
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	494	701	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841306	15841306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	161	778	2	ENST00000307771.7:c.1390C>T	p.Arg464Cys	p.R464C	ENST00000307771	NM_005089.3	464	Cgt/Tgt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462090	120462090	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2644	148	643	0	ENST00000256646.2:c.5626A>G	p.Thr1876Ala	p.T1876A	ENST00000256646	NM_024408.3	1876	Act/Gct																																																																														
SRC	0	MSKCC	GRCh37	20	36014528	36014529	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0018236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	163	793	0	ENST00000358208.4:c.302_303delCA	p.Thr101ArgfsTer48	p.T101Rfs*48	ENST00000358208		101	ACa/a																																																																														
BCOR	0	MSKCC	GRCh37	X	39932696	39932696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	184	1090	0	ENST00000378444.4:c.1903C>T	p.Pro635Ser	p.P635S	ENST00000378444	NM_001123385.1	635	Cca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	215	813	1	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112170851	112170851	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	69	756	0	ENST00000257430.4:c.1947delT	p.Asn649LysfsTer8	p.N649Kfs*8	ENST00000257430	NM_000038.5	649	aaT/aa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15971354	15971354	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	171	625	0	ENST00000268712.3:c.4595A>T	p.Lys1532Met	p.K1532M	ENST00000268712	NM_006311.3	1532	aAg/aTg																																																																														
VHL	0	MSKCC	GRCh37	3	10191487	10191496	+	frameshift_variant	Frame_Shift_Del	DEL	GCGATGCCTC	GCGATGCCTC	-			P-0018239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	90	464	0	ENST00000256474.2:c.480_489delGCGATGCCTC	p.Glu160AspfsTer7	p.E160Dfs*7	ENST00000256474	NM_000551.3	160	gaGCGATGCCTC/ga																																																																														
SETD2	0	MSKCC	GRCh37	3	47098310	47098310	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0018239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	65	407	0	ENST00000409792.3:c.6963+1G>C		p.X2321_splice	ENST00000409792	NM_014159.6	2321																																																																															
PBRM1	0	MSKCC	GRCh37	3	52623240	52623247	+	frameshift_variant	Frame_Shift_Del	DEL	AGCACCAG	AGCACCAG	-			P-0018239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	54	413	0	ENST00000394830.3:c.2804_2811delCTGGTGCT	p.Ser935CysfsTer15	p.S935Cfs*15	ENST00000394830	NM_018313.4	935	tCTGGTGCT/t																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15818021	15818021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	98	324	0	ENST00000307771.7:c.148G>C	p.Asp50His	p.D50H	ENST00000307771	NM_005089.3	50	Gac/Cac																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	156	588	2	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	141	702	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435202	18435203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	37	465	0	ENST00000266497.5:c.187_188insC	p.Phe63SerfsTer18	p.F63Sfs*18	ENST00000266497		63	ttt/tCtt																																																																														
INPP4A	0	MSKCC	GRCh37	2	99182509	99182509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	55	544	0	ENST00000074304.5:c.2312G>A	p.Arg771Gln	p.R771Q	ENST00000074304	NM_001134224.1	771	cGg/cAg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191299	185191299	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	28	462	0	ENST00000265026.3:c.2180A>C	p.Asp727Ala	p.D727A	ENST00000265026	NM_004721.4	727	gAc/gCc																																																																														
TEK	7010	MSKCC	GRCh37	9	27213507	27213507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	43	547	0	ENST00000380036.4:c.2903G>C	p.Arg968Thr	p.R968T	ENST00000380036	NM_000459.3	968	aGa/aCa																																																																														
TP53	0	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	238	586	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																														
ALK	0	MSKCC	GRCh37	2	29443613	29443613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	307	696	0	ENST00000389048.3:c.3604G>A	p.Gly1202Arg	p.G1202R	ENST00000389048	NM_004304.4	1202	Gga/Aga																																																																														
IRS1	0	MSKCC	GRCh37	2	227662428	227662428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	207	459	0	ENST00000305123.5:c.1027G>A	p.Asp343Asn	p.D343N	ENST00000305123	NM_005544.2	343	Gac/Aac																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509111	106509111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	207	605	0	ENST00000359195.3:c.1105G>A	p.Asp369Asn	p.D369N	ENST00000359195	NM_002649.2	369	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	67	759	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	234	808	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	150	843	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	52	566	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928225	178928225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	70	525	0	ENST00000263967.3:c.1411C>G	p.Pro471Ala	p.P471A	ENST00000263967	NM_006218.2	471	Cca/Gca																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740365	58740365	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	87	597	2	ENST00000305921.3:c.1270G>T	p.Glu424Ter	p.E424*	ENST00000305921	NM_003620.3	424	Gag/Tag																																																																														
RB1	0	MSKCC	GRCh37	13	48951171	48951171	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	317	548	0	ENST00000267163.4:c.1332+1G>A		p.X444_splice	ENST00000267163	NM_000321.2	444																																																																															
IKZF1	0	MSKCC	GRCh37	7	50468309	50468309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	80	681	2	ENST00000331340.3:c.1544G>A	p.Arg515His	p.R515H	ENST00000331340	NM_006060.4	515	cGc/cAc																																																																														
SDHB	0	MSKCC	GRCh37	1	17371347	17371347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	88	658	1	ENST00000375499.3:c.109C>T	p.Pro37Ser	p.P37S	ENST00000375499	NM_003000.2	37	Ccc/Tcc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166638	118166638	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	96	429	0	ENST00000369448.3:c.1148C>G	p.Pro383Arg	p.P383R	ENST00000369448	NM_017709.3	383	cCt/cGt																																																																														
IKBKE	0	MSKCC	GRCh37	1	206666432	206666432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	38	609	0	ENST00000367120.3:c.1912G>T	p.Val638Phe	p.V638F	ENST00000367120	NM_014002.3	638	Gtc/Ttc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885238	111885238	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	64	648	0	ENST00000341259.2:c.1126C>G	p.Gln376Glu	p.Q376E	ENST00000341259	NM_005475.2	376	Cag/Gag																																																																														
AXIN2	0	MSKCC	GRCh37	17	63526171	63526171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	62	934	0	ENST00000307078.5:c.2455G>C	p.Glu819Gln	p.E819Q	ENST00000307078	NM_004655.3	819	Gag/Cag																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257844	19257844	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	158	755	0	ENST00000162023.5:c.541+1G>A		p.X181_splice	ENST00000162023		181																																																																															
KMT2B	0	MSKCC	GRCh37	19	36211246	36211246	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1557	143	1119	0	ENST00000222270.7:c.997G>C	p.Glu333Gln	p.E333Q	ENST00000222270	NM_014727.1	333	Gag/Cag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211363	36211363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	132	802	0	ENST00000222270.7:c.1114G>C	p.Glu372Gln	p.E372Q	ENST00000222270	NM_014727.1	372	Gaa/Caa																																																																														
MSH6	0	MSKCC	GRCh37	2	48033714	48033720	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGAGG	CCAGAGG	-			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	78	697	0	ENST00000234420.5:c.3925_3931delCCAGAGG	p.Pro1309LysfsTer16	p.P1309Kfs*16	ENST00000234420	NM_000179.2	1309	CCAGAGGaa/aa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790168	40790168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	109	556	0	ENST00000373198.4:c.2563G>T	p.Gly855Trp	p.G855W	ENST00000373198	NM_133170.3	855	Ggg/Tgg																																																																														
U2AF1	0	MSKCC	GRCh37	21	44513282	44513293	+	inframe_deletion	In_Frame_Del	DEL	CCACCGCCACCG	CCACCGCCACCG	-			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	81	856	0	ENST00000291552.4:c.642_653delCGGTGGCGGTGG	p.Gly220_Gly223del	p.G220_G223del	ENST00000291552	NM_006758.2	214	ggCGGTGGCGGTGGt/ggt																																																																														
BAP1	0	MSKCC	GRCh37	3	52439855	52439855	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	111	625	0	ENST00000460680.1:c.857A>T	p.Lys286Met	p.K286M	ENST00000460680	NM_004656.3	286	aAg/aTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187531098	187531098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	105	592	0	ENST00000441802.2:c.9925G>A	p.Asp3309Asn	p.D3309N	ENST00000441802	NM_005245.3	3309	Gat/Aat																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225734	26225734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	238	615	0	ENST00000360408.1:c.352G>T	p.Val118Leu	p.V118L	ENST00000360408	NM_003532.2	118	Gtg/Ttg																																																																														
RBM10	0	MSKCC	GRCh37	X	47039349	47039349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	96	880	0	ENST00000329236.7:c.742delG	p.Val248CysfsTer10	p.V248Cfs*10	ENST00000329236	NM_001204466.1	247	gcG/gc																																																																														
MED12	0	MSKCC	GRCh37	X	70342440	70342440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	43	646	0	ENST00000374080.3:c.1331G>A	p.Cys444Tyr	p.C444Y	ENST00000374080		444	tGc/tAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76814203	76814203	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	83	728	0	ENST00000373344.5:c.6441T>A	p.Ser2147Arg	p.S2147R	ENST00000373344	NM_000489.3	2147	agT/agA																																																																														
STAG2	0	MSKCC	GRCh37	X	123184087	123184087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	115	555	0	ENST00000218089.9:c.945G>T	p.Trp315Cys	p.W315C	ENST00000218089	NM_001042749.1	315	tgG/tgT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018246-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	111	783	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RBM10	0	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018246-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			590	207	969	0	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018246-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	62	523	0	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																																																														
RNF43	0	MSKCC	GRCh37	17	56440700	56440726	+	inframe_deletion	In_Frame_Del	DEL	ATCAGCTTCTCAGCGTCATTACCCCAG	ATCAGCTTCTCAGCGTCATTACCCCAG	-			P-0018246-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	164	809	0	ENST00000407977.2:c.492_518del	p.Ile164_Leu172del	p.I164_L172del	ENST00000407977		164	atCTGGGGTAATGACGCTGAGAAGCTGATg/atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	268	795	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	168	441	2	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	122	420	0	ENST00000349496.5:c.97T>G	p.Ser33Ala	p.S33A	ENST00000349496	NM_001904.3	33	Tct/Gct																																																																														
BCOR	0	MSKCC	GRCh37	X	39914723	39914723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	167	638	0	ENST00000378444.4:c.4639C>T	p.Arg1547Ter	p.R1547*	ENST00000378444	NM_001123385.1	1547	Cga/Tga																																																																														
IKBKE	0	MSKCC	GRCh37	1	206661272	206661272	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	186	687	0	ENST00000367120.3:c.1638T>A	p.Cys546Ter	p.C546*	ENST00000367120	NM_014002.3	546	tgT/tgA																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870966	12870966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	133	425	0	ENST00000228872.4:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000228872	NM_004064.3	65	Cag/Tag																																																																														
TSHR	0	MSKCC	GRCh37	14	81554335	81554335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	226	816	3	ENST00000298171.2:c.355C>T	p.Pro119Ser	p.P119S	ENST00000298171	NM_000369.2	119	Cct/Tct																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351899	89351899	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	316	967	1	ENST00000301030.4:c.1051G>T	p.Glu351Ter	p.E351*	ENST00000301030	NM_001256183.1	351	Gag/Tag																																																																														
PARK2	0	MSKCC	GRCh37	6	161781129	161781129	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	137	628	0	ENST00000366898.1:c.1276delG	p.Glu426LysfsTer9	p.E426Kfs*9	ENST00000366898	NM_004562.2	426	Gaa/aa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945034	151945034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	29	299	0	ENST00000262189.6:c.2485G>T	p.Ala829Ser	p.A829S	ENST00000262189	NM_170606.2	829	Gct/Tct																																																																														
PTPRD	0	MSKCC	GRCh37	9	8507419	8507419	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	46	377	0	ENST00000356435.5:c.1559T>C	p.Leu520Pro	p.L520P	ENST00000356435		520	cTa/cCa																																																																														
ATRX	0	MSKCC	GRCh37	X	76855019	76855022	+	frameshift_variant	Frame_Shift_Del	DEL	TTTT	TTTT	-			P-0018247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	61	657	0	ENST00000373344.5:c.5814_5817delAAAA	p.Lys1939IlefsTer15	p.K1939Ifs*15	ENST00000373344	NM_000489.3	1938	aaAAAA/aa																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	412	573	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	180	822	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	224	761	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	158	333	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa																																																																														
ATM	0	MSKCC	GRCh37	11	108204643	108204643	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	183	550	0	ENST00000278616.4:c.7958T>G	p.Ile2653Ser	p.I2653S	ENST00000278616	NM_000051.3	2653	aTt/aGt																																																																														
FANCA	0	MSKCC	GRCh37	16	89816217	89816217	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	583	777	1	ENST00000389301.3:c.3160A>T	p.Arg1054Ter	p.R1054*	ENST00000389301	NM_000135.2	1054	Aga/Tga																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554689	63554689	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	191	459	0	ENST00000307078.5:c.50T>G	p.Phe17Cys	p.F17C	ENST00000307078	NM_004655.3	17	tTc/tGc																																																																														
CALR	0	MSKCC	GRCh37	19	13050902	13050902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	289	674	0	ENST00000316448.5:c.433C>T	p.His145Tyr	p.H145Y	ENST00000316448	NM_004343.3	145	Cat/Tat																																																																														
MITF	0	MSKCC	GRCh37	3	69987147	69987147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	250	565	2	ENST00000352241.4:c.529G>A	p.Ala177Thr	p.A177T	ENST00000352241	NM_198159.2	177	Gca/Aca																																																																														
TP53	0	MSKCC	GRCh37	17	7573999	7573999	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	638	558	1	ENST00000269305.4:c.1028delA	p.Glu343GlyfsTer2	p.E343Gfs*2	ENST00000269305	NM_001126112.2	343	gAg/gg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716327	52716327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	334	381	0	ENST00000322088.6:c.771G>T	p.Trp257Cys	p.W257C	ENST00000322088	NM_014225.5	257	tgG/tgT																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	275	630	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578523	7578523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	241	756	0	ENST00000269305.4:c.407A>C	p.Gln136Pro	p.Q136P	ENST00000269305	NM_001126112.2	136	cAa/cCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0018267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	261	536	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	349	398	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097751	27097751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	397	485	1	ENST00000324856.7:c.3344del	p.Pro1115GlnfsTer46	p.P1115Qfs*46	ENST00000324856	NM_006015.4	1114	Ccc/cc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	232	559	1	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
FGFR2	0	MSKCC	GRCh37	10	123247515	123247515	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	196	441	0	ENST00000358487.5:c.1976A>T	p.Lys659Met	p.K659M	ENST00000358487	NM_000141.4	659	aAg/aTg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12870985	12870986	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0018269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	464	272	0	ENST00000228872.4:c.214_215dup	p.Lys73AlafsTer47	p.K73Afs*47	ENST00000228872	NM_004064.3	71	gag/gaGGg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101911501	101911501	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	152	361	0	ENST00000374994.4:c.1426T>A	p.Tyr476Asn	p.Y476N	ENST00000374994	NM_004612.2	476	Tat/Aat																																																																														
ELF3	0	MSKCC	GRCh37	1	201983060	201983060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	85	820	1	ENST00000359651.3:c.909C>A	p.Phe303Leu	p.F303L	ENST00000359651		303	ttC/ttA																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739392	145739392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	52	568	0	ENST00000428558.2:c.1978G>A	p.Glu660Lys	p.E660K	ENST00000428558	NM_004260.3	660	Gaa/Aaa																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	234	539	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	391	674	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603148	48603148	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	371	346	0	ENST00000342988.3:c.1447+2T>C		p.X483_splice	ENST00000342988	NM_005359.5	483																																																																															
TSC2	0	MSKCC	GRCh37	16	2130234	2130234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1393	262	649	0	ENST00000219476.3:c.3466C>T	p.Pro1156Ser	p.P1156S	ENST00000219476	NM_000548.3	1156	Cca/Tca																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778645	3778645	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	175	447	0	ENST00000262367.5:c.6403C>T	p.Gln2135Ter	p.Q2135*	ENST00000262367	NM_004380.2	2135	Cag/Tag																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944247	81944247	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	608	632	0	ENST00000359376.3:c.1856A>T	p.Glu619Val	p.E619V	ENST00000359376	NM_002661.3	619	gAg/gTg																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24145607	24145608	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TGGT			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	423	373	0	ENST00000263121.7:c.627_628+2dupTGGT		p.N209fs	ENST00000263121	NM_003073.3	209	aat/aaTGGTt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52678722	52678722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	212	584	0	ENST00000394830.3:c.897G>C	p.Met299Ile	p.M299I	ENST00000394830	NM_018313.4	299	atG/atC																																																																														
EGFR	0	MSKCC	GRCh37	7	55249091	55249091	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	253	574	0	ENST00000275493.2:c.2389T>A	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	Tgc/Agc																																																																														
RBM10	0	MSKCC	GRCh37	X	47045476	47045476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	516	329	0	ENST00000329236.7:c.2209C>T	p.Arg737Trp	p.R737W	ENST00000329236	NM_001204466.1	737	Cgg/Tgg																																																																														
TAP1	0	MSKCC	GRCh37	6	32821278	32821278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	190	806	0	ENST00000354258.4:c.316C>G	p.Leu106Val	p.L106V	ENST00000354258	NM_000593.5	106	Ctg/Gtg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589631	67589632	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATTATATGAAGA			P-0018273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	229	373	0	ENST00000274335.5:c.1397_1408dupTATATGAAGAAT	p.Leu466_Glu469dup	p.L466_E469dup	ENST00000274335		466	aga/agATTATATGAAGAa																																																																														
JAK3	0	MSKCC	GRCh37	19	17942593	17942593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	200	418	2	ENST00000458235.1:c.2695C>T	p.Arg899Trp	p.R899W	ENST00000458235	NM_000215.3	899	Cgg/Tgg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160671	56160679	+	inframe_deletion	In_Frame_Del	DEL	ACTGTACTT	ACTGTACTT	-			P-0018273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	362	435	0	ENST00000399503.3:c.949_957delTACTTACTG	p.Tyr317_Leu319del	p.Y317_L319del	ENST00000399503	NM_005921.1	315	agACTGTACTTa/aga																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178663	56178664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAGAAG			P-0018273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	104	219	0	ENST00000399503.3:c.3637_3643dupGGAGAAG	p.Asp1215GlyfsTer26	p.D1215Gfs*26	ENST00000399503	NM_005921.1	1212	-/GGAGAAG																																																																														
RB1	0	MSKCC	GRCh37	13	48916850	48916850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0018274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	237	321	0	ENST00000267163.4:c.380G>A	p.Ser127Asn	p.S127N	ENST00000267163	NM_000321.2	127	aGt/aAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023056	27023059	+	frameshift_variant	Frame_Shift_Del	DEL	CGGG	CGGG	-			P-0018274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	60	55	0	ENST00000324856.7:c.163_166delGGGC	p.Gly55ArgfsTer45	p.G55Rfs*45	ENST00000324856	NM_006015.4	54	gcCGGG/gc																																																																														
HRAS	0	MSKCC	GRCh37	11	533048	533458	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCCGTGTCCCCAGTAGCCCCACTAAGACTCAGAACCAACAGGTGCCCGTGGGACACTCTGGGGACAAGAGGGGCCGGGCCCCAGGGTCACCGCTCCGGCCTGGCTCAGGGCAGCTCTCCCCAAGGACCTCCGCCTTCCCCGGAGCTGTGTCGGCCCAGGACTGCAGGGCGTGAGCCCAGACCCCGGCCCTCGCCTCCCTCACTGCCCTGCCGTCCCGGGAGACTTACAGCGCGAGGGGCCGCTGGGTCACATGGGTCCCGGGGGGTCCCAGAGGGTCCCGGAGCTGGAGCTAGAGCCAGAGCGGCTGCCCTGTGTCAAGGGAGAGGGTCAGTGAGTGCTGCTCCCTGGCTGGGGCGGGGCGGGGCGGGTCCCTGGCTAGCTGTGGGGTGGAGAGCTGCCTCACCTGCCG	GGCCCGTGTCCCCAGTAGCCCCACTAAGACTCAGAACCAACAGGTGCCCGTGGGACACTCTGGGGACAAGAGGGGCCGGGCCCCAGGGTCACCGCTCCGGCCTGGCTCAGGGCAGCTCTCCCCAAGGACCTCCGCCTTCCCCGGAGCTGTGTCGGCCCAGGACTGCAGGGCGTGAGCCCAGACCCCGGCCCTCGCCTCCCTCACTGCCCTGCCGTCCCGGGAGACTTACAGCGCGAGGGGCCGCTGGGTCACATGGGTCCCGGGGGGTCCCAGAGGGTCCCGGAGCTGGAGCTAGAGCCAGAGCGGCTGCCCTGTGTCAAGGGAGAGGGTCAGTGAGTGCTGCTCCCTGGCTGGGGCGGGGCGGGGCGGGTCCCTGGCTAGCTGTGGGGTGGAGAGCTGCCTCACCTGCCG	-			P-0018274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	396	10	0	ENST00000311189.7:c.451-293_445delCGGCAGGTGAGGCAGCTCTCCACCCCACAGCTAGCCAGGGACCCGCCCCGCCCCGCCCCAGCCAGGGAGCAGCACTCACTGACCCTCTCCCTTGACACAGGGCAGCCGCTCTGGCTCTAGCTCCAGCTCCGGGACCCTCTGGGACCCCCCGGGACCCATGTGACCCAGCGGCCCCTCGCGCTGTAAGTCTCCCGGGACGGCAGGGCAGTGAGGGAGGCGAGGGCCGGGGTCTGGGCTCACGCCCTGCAGTCCTGGGCCGACACAGCTCCGGGGAAGGCGGAGGTCCTTGGGGAGAGCTGCCCTGAGCCAGGCCGGAGCGGTGACCCTGGGGCCCGGCCCCTCTTGTCCCCAGAGTGTCCCACGGGCACCTGTTGGTTCTGAGTCTTAGTGGGGCTACTGGGGACACGGGCC		p.X151_splice	ENST00000311189		151																																																																															
CREBBP	0	MSKCC	GRCh37	16	3823921	3823921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	282	480	0	ENST00000262367.5:c.2294C>T	p.Ser765Phe	p.S765F	ENST00000262367	NM_004380.2	765	tCt/tTt																																																																														
RB1	0	MSKCC	GRCh37	13	49027160	49027160	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	90	334	0	ENST00000267163.4:c.1727C>G	p.Ser576Ter	p.S576*	ENST00000267163	NM_000321.2	576	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0018275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1276	221	1008	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45858956	45858956	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	174	883	0	ENST00000391945.4:c.1510A>G	p.Ile504Val	p.I504V	ENST00000391945	NM_000400.3	504	Atc/Gtc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133883	55133883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	113	353	0	ENST00000257290.5:c.1096G>A	p.Asp366Asn	p.D366N	ENST00000257290	NM_006206.4	366	Gat/Aat																																																																														
TET2	0	MSKCC	GRCh37	4	106156087	106156087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	39	427	1	ENST00000380013.4:c.988G>A	p.Glu330Lys	p.E330K	ENST00000380013	NM_001127208.2	330	Gag/Aag																																																																														
EGFR	0	MSKCC	GRCh37	7	55242469	55242481	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAGCAA	TTAAGAGAAGCAA	CCAG			P-0018275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	100	602	3	ENST00000275493.2:c.2239_2251delTTAAGAGAAGCAAinsCCAG	p.Leu747_Thr751delinsProAla	p.L747_T751delinsPA	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAAca/CCAGca																																																																														
MED12	0	MSKCC	GRCh37	X	70339589	70339630	+	inframe_deletion	In_Frame_Del	DEL	TCCTGACACTGGTCGCAGGAAGCCCCAAGTGAACCAGAAGGA	TCCTGACACTGGTCGCAGGAAGCCCCAAGTGAACCAGAAGGA	-			P-0018275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	147	588	0	ENST00000374080.3:c.259_300delCCTGACACTGGTCGCAGGAAGCCCCAAGTGAACCAGAAGGAT	p.Pro87_Asp100del	p.P87_D100del	ENST00000374080		86	ctTCCTGACACTGGTCGCAGGAAGCCCCAAGTGAACCAGAAGGAt/ctt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	98	294	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	94	267	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			657	195	289	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0018277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			812	120	380	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			794	104	351	0	ENST00000342988.3:c.1611C>G	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaG																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	269	338	1	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
AMER1	0	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			554	402	351	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
RAF1	0	MSKCC	GRCh37	3	12627250	12627250	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			902	156	395	0	ENST00000251849.4:c.1466T>C	p.Leu489Ser	p.L489S	ENST00000251849	NM_002880.3	489	tTg/tCg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153271193	153271193	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	137	208	0	ENST00000281708.4:c.584+1G>A		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																															
KMT2C	0	MSKCC	GRCh37	7	151879673	151879673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018277-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			373	52	109	0	ENST00000262189.6:c.5272C>T	p.Arg1758Cys	p.R1758C	ENST00000262189	NM_170606.2	1758	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	502	662	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	337	552	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457272	67457289	+	inframe_deletion	In_Frame_Del	DEL	GCTCCCTCATGTCATCTA	GCTCCCTCATGTCATCTA	-			P-0018279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	323	401	0	ENST00000327367.4:c.246_263delGCTCCCTCATGTCATCTA	p.Leu83_Tyr88del	p.L83_Y88del	ENST00000327367	NM_005902.3	82	ggGCTCCCTCATGTCATCTAc/ggc																																																																														
PALB2	0	MSKCC	GRCh37	16	23634429	23634429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	293	464	0	ENST00000261584.4:c.2857G>A	p.Asp953Asn	p.D953N	ENST00000261584	NM_024675.3	953	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	60	616	0	ENST00000269305.4:c.824G>C	p.Cys275Ser	p.C275S	ENST00000269305	NM_001126112.2	275	tGt/tCt																																																																														
CTCF	0	MSKCC	GRCh37	16	67644835	67644835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	33	378	0	ENST00000264010.4:c.100G>A	p.Glu34Lys	p.E34K	ENST00000264010	NM_006565.3	34	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0018281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	58	483	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	42	455	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	145	507	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CTCF	0	MSKCC	GRCh37	16	67660469	67660469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	88	289	4	ENST00000264010.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000264010	NM_006565.3	457	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89717731	89717732	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	114	399	0	ENST00000371953.3:c.757dupA	p.Ile253AsnfsTer45	p.I253Nfs*45	ENST00000371953	NM_000314.4	252	-/A																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023727	27023728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	93	574	0	ENST00000324856.7:c.837dupC	p.Ser280LeufsTer120	p.S280Lfs*120	ENST00000324856	NM_006015.4	278	ggc/ggCc																																																																														
PTEN	0	MSKCC	GRCh37	10	89624230	89624231	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0018283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	28	95	0	ENST00000371953.3:c.5_6delCA	p.Thr2SerfsTer8	p.T2Sfs*8	ENST00000371953	NM_000314.4	2	ACa/a																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589579	67589580	+	inframe_insertion	In_Frame_Ins	INS	-	-	AATTACATG			P-0018283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	93	325	0	ENST00000274335.5:c.1346_1354dupTACATGAAT	p.Leu449_Glu451dup	p.L449_E451dup	ENST00000274335		449	aaa/aAATTACATGaa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591109	67591109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	102	311	0	ENST00000274335.5:c.1702C>G	p.Pro568Ala	p.P568A	ENST00000274335		568	Cca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	106	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	88	378	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88679243	88679243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	80	425	0	ENST00000360948.2:c.794C>A	p.Ala265Asp	p.A265D	ENST00000360948	NM_001012338.2	265	gCc/gAc																																																																														
GATA2	0	MSKCC	GRCh37	3	128204578	128204578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	55	286	0	ENST00000341105.2:c.863C>A	p.Ser288Tyr	p.S288Y	ENST00000341105	NM_032638.4	288	tCc/tAc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523672	176523672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1337	115	449	1	ENST00000292408.4:c.2083G>A	p.Val695Met	p.V695M	ENST00000292408	NM_213647.1	695	Gtg/Atg																																																																														
PREX2	0	MSKCC	GRCh37	8	68956799	68956799	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	74	333	0	ENST00000288368.4:c.917A>T	p.Glu306Val	p.E306V	ENST00000288368	NM_024870.2	306	gAa/gTa																																																																														
AMER1	0	MSKCC	GRCh37	X	63411402	63411402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	59	377	0	ENST00000330258.3:c.1765C>A	p.His589Asn	p.H589N	ENST00000330258	NM_152424.3	589	Cat/Aat																																																																														
NRAS	0	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	205	549	1	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584787	48584787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	224	451	0	ENST00000342988.3:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000342988	NM_005359.5	289	Cag/Tag																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	181	332	0	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																														
APC	0	MSKCC	GRCh37	5	112175378	112175378	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	174	239	0	ENST00000257430.4:c.4087A>T	p.Lys1363Ter	p.K1363*	ENST00000257430	NM_000038.5	1363	Aaa/Taa																																																																														
RIT1	0	MSKCC	GRCh37	1	155874521	155874521	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	47	466	0	ENST00000368323.3:c.237+1G>T		p.X79_splice	ENST00000368323	NM_006912.5	79																																																																															
KMT2A	0	MSKCC	GRCh37	11	118363790	118363790	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	66	385	0	ENST00000534358.1:c.5023T>G	p.Leu1675Val	p.L1675V	ENST00000534358	NM_005933.3	1675	Tta/Gta																																																																														
CD276	0	MSKCC	GRCh37	15	73994896	73994896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	11	23	0	ENST00000318443.5:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000318443	NM_001024736.1	127	cGg/cAg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900611	3900611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	187	336	3	ENST00000262367.5:c.485C>T	p.Ala162Val	p.A162V	ENST00000262367	NM_004380.2	162	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579362	7579367	+	inframe_deletion	In_Frame_Del	DEL	AACCGT	AACCGT	-			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	225	546	0	ENST00000269305.4:c.320_325delACGGTT	p.Tyr107_Gly108del	p.Y107_G108del	ENST00000269305	NM_001126112.2	107	tACGGTTtc/ttc																																																																														
MDC1	0	MSKCC	GRCh37	6	30681669	30681669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	42	344	1	ENST00000376406.3:c.428G>A	p.Gly143Asp	p.G143D	ENST00000376406	NM_014641.2	143	gGc/gAc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	129	453	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43705534	43705534	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0018289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	182	413	0	ENST00000382044.4:c.5090-2A>T		p.X1697_splice	ENST00000382044	NM_001141980.1	1697																																																																															
RARA	0	MSKCC	GRCh37	17	38511598	38511598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	118	442	2	ENST00000254066.5:c.1096C>T	p.Arg366Trp	p.R366W	ENST00000254066	NM_000964.3	366	Cgg/Tgg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	114	271	0	ENST00000342988.3:c.1088G>A	p.Cys363Tyr	p.C363Y	ENST00000342988	NM_005359.5	363	tGt/tAt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467357	66467357	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0018289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	45	108	0	ENST00000273854.3:c.910+2T>C		p.X304_splice	ENST00000273854	NM_004439.5	304																																																																															
BTK	0	MSKCC	GRCh37	X	100611791	100611791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	176	355	0	ENST00000308731.7:c.1330G>A	p.Glu444Lys	p.E444K	ENST00000308731	NM_000061.2	444	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	724	693	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MDM4	0	MSKCC	GRCh37	1	204518425	204518425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	300	431	0	ENST00000367182.3:c.1088G>A	p.Arg363Gln	p.R363Q	ENST00000367182	NM_001278516.1	363	cGa/cAa																																																																														
SMYD3	0	MSKCC	GRCh37	1	246670355	246670355	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	155	376	0	ENST00000388985.4:c.164+1G>A		p.X55_splice	ENST00000388985		55																																																																															
NFKBIA	0	MSKCC	GRCh37	14	35871637	35871648	+	inframe_deletion	In_Frame_Del	DEL	TCATAGCTCTCC	TCATAGCTCTCC	-			P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	93	230	0	ENST00000216797.5:c.858_869delGGAGAGCTATGA	p.Glu286_Tyr289del	p.E286_Y289del	ENST00000216797	NM_020529.2	286	gaGGAGAGCTATGAc/gac																																																																														
APC	324	MSKCC	GRCh37	5	112174920	112174921	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	288	289	0	ENST00000257430.4:c.3631_3632del	p.Met1211ValfsTer5	p.M1211Vfs*5	ENST00000257430	NM_000038.5	1210	cAT/c																																																																														
PREX2	0	MSKCC	GRCh37	8	68992699	68992699	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	131	615	1	ENST00000288368.4:c.1664A>T	p.Lys555Ile	p.K555I	ENST00000288368	NM_024870.2	555	aAa/aTa																																																																														
BCOR	0	MSKCC	GRCh37	X	39933361	39933361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	801	221	1	ENST00000378444.4:c.1238C>T	p.Thr413Ile	p.T413I	ENST00000378444	NM_001123385.1	413	aCa/aTa																																																																														
BTK	0	MSKCC	GRCh37	X	100630173	100630173	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141488935		P-0018294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	419	206	0	ENST00000308731.7:c.100G>A	p.Val34Met	p.V34M	ENST00000308731	NM_000061.2	34	Gtg/Atg																																																																														
MEN1	0	MSKCC	GRCh37	11	64572005	64572005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	154	633	0	ENST00000337652.1:c.1649C>T	p.Pro550Leu	p.P550L	ENST00000337652	NM_130803.2	550	cCg/cTg																																																																														
FLT1	0	MSKCC	GRCh37	13	28895692	28895692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	127	602	0	ENST00000282397.4:c.3082A>G	p.Ile1028Val	p.I1028V	ENST00000282397	NM_002019.4	1028	Att/Gtt																																																																														
ARID2	0	MSKCC	GRCh37	12	46211464	46211464	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	43	208	0	ENST00000334344.6:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000334344	NM_152641.2	144	Caa/Taa																																																																														
RAF1	0	MSKCC	GRCh37	3	12660181	12660181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	218	526	1	ENST00000251849.4:c.40G>A	p.Gly14Ser	p.G14S	ENST00000251849	NM_002880.3	14	Ggt/Agt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41268793	41268793	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	153	489	0	ENST00000349496.5:c.1031T>A	p.Leu344Gln	p.L344Q	ENST00000349496	NM_001904.3	344	cTg/cAg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061217	38061235	+	protein_altering_variant	In_Frame_Del	DEL	AGCCGTTCTCGAACATGTT	AGCCGTTCTCGAACATGTT	C			P-0018302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	117	471	0	ENST00000250448.2:c.754_772delAACATGTTCGAGAACGGCTinsG	p.Asn252_Cys258delinsGly	p.N252_C258delinsG	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTgc/Ggc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0018304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	219	422	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0018304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	291	507	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20153932	20153932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	215	400	0	ENST00000379607.5:c.128G>A	p.Gly43Glu	p.G43E	ENST00000379607	NM_001412.3	43	gGa/gAa																																																																														
ARID2	0	MSKCC	GRCh37	12	46244626	46244626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	383	506	0	ENST00000334344.6:c.2720C>T	p.Ser907Leu	p.S907L	ENST00000334344	NM_152641.2	907	tCa/tTa																																																																														
LATS2	0	MSKCC	GRCh37	13	21557767	21557768	+	missense_variant	Missense_Mutation	DNP	AG	AG	GT			P-0018304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	335	524	0	ENST00000382592.4:c.2077_2078delCTinsAC	p.Leu693Thr	p.L693T	ENST00000382592	NM_014572.2	693	CTg/ACg																																																																														
CDK12	0	MSKCC	GRCh37	17	37627404	37627404	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	370	608	0	ENST00000447079.4:c.1319C>G	p.Ser440Ter	p.S440*	ENST00000447079	NM_015083.1	440	tCa/tGa																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	202	477	0	ENST00000286548.4:c.626A>G	p.Gln209Arg	p.Q209R	ENST00000286548	NM_002072.3	209	cAa/cGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0018305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	49	355	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107041	27107042	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCAGAACCCACCCTTTGAGCCAACTAGTGTGGACATGATGCGGCGGGC			P-0018305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	52	352	0	ENST00000324856.7:c.6656_6704dupAGAACCCACCCTTTGAGCCAACTAGTGTGGACATGATGCGGCGGGCTGC	p.Arg2236GlufsTer5	p.R2236Efs*5	ENST00000324856	NM_006015.4	2218	atg/aTGCAGAACCCACCCTTTGAGCCAACTAGTGTGGACATGATGCGGCGGGCtg																																																																														
RAD51C	0	MSKCC	GRCh37	17	56770103	56770103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	71	408	0	ENST00000337432.4:c.99G>T	p.Gln33His	p.Q33H	ENST00000337432	NM_058216.2	33	caG/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0018306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	318	509	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PREX2	0	MSKCC	GRCh37	8	69104006	69104006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	161	501	1	ENST00000288368.4:c.4396G>A	p.Ala1466Thr	p.A1466T	ENST00000288368	NM_024870.2	1466	Gct/Act																																																																														
RET	0	MSKCC	GRCh37	10	43572708	43572708	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0018306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	11	61	0	ENST00000355710.3:c.2T>C	p.Met1?	p.M1?	ENST00000355710	NM_020975.4	1	aTg/aCg																																																																														
PTPN11	0	MSKCC	GRCh37	12	112884118	112884118	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	144	304	0	ENST00000351677.2:c.53A>C	p.Asn18Thr	p.N18T	ENST00000351677	NM_002834.3	18	aAc/aCc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817829	3817829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	56	482	0	ENST00000262367.5:c.3142G>C	p.Val1048Leu	p.V1048L	ENST00000262367	NM_004380.2	1048	Gtg/Ctg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222263	53222263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	128	315	0	ENST00000375401.3:c.4569G>T	p.Gln1523His	p.Q1523H	ENST00000375401	NM_004187.3	1523	caG/caT																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	144	420	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0018307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	474	1204	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
BAP1	0	MSKCC	GRCh37	3	52437801	52437802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	256	783	0	ENST00000460680.1:c.1359dup	p.Glu454ArgfsTer15	p.E454Rfs*15	ENST00000460680	NM_004656.3	453	-/A																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589609	67589617	+	inframe_deletion	In_Frame_Del	DEL	GAAAAAAGT	GAAAAAAGT	-			P-0018307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	196	670	0	ENST00000274335.5:c.1372_1380del	p.Glu458_Ser460del	p.E458_S460del	ENST00000274335		458	GAAAAAAGT/-																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	232	527	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	154	654	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31016218	31016218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	92	451	0	ENST00000375687.4:c.464C>T	p.Ser155Phe	p.S155F	ENST00000375687	NM_015338.5	155	tCc/tTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860346	151860346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	142	698	0	ENST00000262189.6:c.10316C>G	p.Ser3439Cys	p.S3439C	ENST00000262189	NM_170606.2	3439	tCt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577555	7577574	+	protein_altering_variant	In_Frame_Del	DEL	GCAGGAACTGTTACACATGT	GCAGGAACTGTTACACATGT	ACAGG			P-0018311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	200	641	3	ENST00000269305.4:c.707_726delinsCCTGT	p.Tyr236_Ser240del	p.Y236_S240del	ENST00000269305	NM_001126112.2	236	tACATGTGTAACAGTTCCTGC/tCCTGT																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967984	93967984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	67	540	1	ENST00000369303.4:c.1943G>T	p.Cys648Phe	p.C648F	ENST00000369303	NM_004440.3	648	tGc/tTc																																																																														
HRAS	0	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	383	761	2	ENST00000311189.7:c.38G>T	p.Gly13Val	p.G13V	ENST00000311189		13	gGt/gTt																																																																														
CDC73	0	MSKCC	GRCh37	1	193091459	193091459	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	98	462	1	ENST00000367435.3:c.129G>T	p.Trp43Cys	p.W43C	ENST00000367435	NM_024529.4	43	tgG/tgT																																																																														
PPARG	0	MSKCC	GRCh37	3	12475451	12475451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	171	885	2	ENST00000287820.6:c.1325T>C	p.Leu442Pro	p.L442P	ENST00000287820	NM_015869.4	442	cTa/cCa																																																																														
LYN	0	MSKCC	GRCh37	8	56922646	56922646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1200	282	876	0	ENST00000519728.1:c.1516G>A	p.Gly506Arg	p.G506R	ENST00000519728	NM_002350.3	506	Ggg/Agg																																																																														
NF1	0	MSKCC	GRCh37	17	29553496	29553499	+	missense_variant	Missense_Mutation	ONP	AAGC	AAGC	GAGA			P-0018314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	173	843	0	ENST00000358273.4:c.2045_2048delinsGAGA	p.Gln682_Ala683delinsArgAsp	p.Q682_A683delinsRD	ENST00000358273	NM_001042492.2	682	cAAGCc/cGAGAc																																																																														
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	133	328	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	125	312	3	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274090	10274090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	121	598	2	ENST00000330684.3:c.179C>T	p.Ala60Val	p.A60V	ENST00000330684	NM_001134407.1	60	gCg/gTg																																																																														
STAT3	0	MSKCC	GRCh37	17	40468851	40468851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	248	568	0	ENST00000264657.5:c.2213G>C	p.Gly738Ala	p.G738A	ENST00000264657	NM_139276.2	738	gGa/gCa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	84	478	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	84	478	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	326	1197	1	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	84	478	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106526608	106526608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	118	635	0	ENST00000359195.3:c.2901C>A	p.His967Gln	p.H967Q	ENST00000359195	NM_002649.2	967	caC/caA																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46546390	46546390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	40	717	0	ENST00000262741.5:c.139T>C	p.Ser47Pro	p.S47P	ENST00000262741	NM_003629.3	47	Tca/Cca																																																																														
JAK1	0	MSKCC	GRCh37	1	65313285	65313285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	44	777	0	ENST00000342505.4:c.1829G>A	p.Gly610Glu	p.G610E	ENST00000342505	NM_002227.2	610	gGa/gAa																																																																														
CCND2	0	MSKCC	GRCh37	12	4409043	4409043	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	97	464	0	ENST00000261254.3:c.738C>A	p.Cys246Ter	p.C246*	ENST00000261254	NM_001759.3	246	tgC/tgA																																																																														
KMT2D	0	MSKCC	GRCh37	12	49428394	49428394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	328	913	1	ENST00000301067.7:c.10411C>T	p.Gln3471Ter	p.Q3471*	ENST00000301067	NM_003482.3	3471	Cag/Tag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879854	37879854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	1903	831	0	ENST00000269571.5:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000269571		717	Gag/Aag																																																																														
AXL	0	MSKCC	GRCh37	19	41744021	41744021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	48	936	0	ENST00000301178.4:c.956C>T	p.Ser319Phe	p.S319F	ENST00000301178	NM_021913.4	319	tCc/tTc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45858925	45858925	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	78	965	0	ENST00000391945.4:c.1541T>C	p.Ile514Thr	p.I514T	ENST00000391945	NM_000400.3	514	aTt/aCt																																																																														
ESR1	0	MSKCC	GRCh37	6	152163814	152163814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	93	579	2	ENST00000206249.3:c.535G>A	p.Ala179Thr	p.A179T	ENST00000206249	NM_000125.3	179	Gcc/Acc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468081	50468081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	22	405	0	ENST00000331340.3:c.1316G>T	p.Arg439Leu	p.R439L	ENST00000331340	NM_006060.4	439	cGc/cTc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738406	145738406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	62	776	0	ENST00000428558.2:c.2579C>A	p.Pro860Gln	p.P860Q	ENST00000428558	NM_004260.3	860	cCg/cAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76952128	76952128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	128	413	0	ENST00000373344.5:c.307G>T	p.Val103Leu	p.V103L	ENST00000373344	NM_000489.3	103	Gta/Tta																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	80	546	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	59	738	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508536	106508536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	22	211	0	ENST00000359195.3:c.530G>T	p.Arg177Leu	p.R177L	ENST00000359195	NM_002649.2	177	cGc/cTc																																																																														
RAD21	0	MSKCC	GRCh37	8	117866581	117866581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	47	567	0	ENST00000297338.2:c.1064C>T	p.Pro355Leu	p.P355L	ENST00000297338	NM_006265.2	355	cCg/cTg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463532	25463532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	38	464	0	ENST00000264709.3:c.2150A>G	p.Asn717Ser	p.N717S	ENST00000264709	NM_175629.2	717	aAc/aGc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81957189	81957189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	37	426	1	ENST00000359376.3:c.2407C>A	p.Pro803Thr	p.P803T	ENST00000359376	NM_002661.3	803	Ccc/Acc																																																																														
RARA	0	MSKCC	GRCh37	17	38508624	38508650	+	inframe_deletion	In_Frame_Del	DEL	CTGGGACAAGTTCAGTGAACTCTCCAC	CTGGGACAAGTTCAGTGAACTCTCCAC	-			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	82	732	0	ENST00000254066.5:c.673_699delTGGGACAAGTTCAGTGAACTCTCCACC	p.Trp225_Thr233del	p.W225_T233del	ENST00000254066	NM_000964.3	224	ctCTGGGACAAGTTCAGTGAACTCTCCACc/ctc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123707	11123707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	41	596	0	ENST00000344626.4:c.2357C>A	p.Thr786Asn	p.T786N	ENST00000344626	NM_003072.3	786	aCc/aAc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25464450	25464450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	25	382	0	ENST00000264709.3:c.2063G>T	p.Arg688Leu	p.R688L	ENST00000264709	NM_175629.2	688	cGc/cTc																																																																														
EPCAM	0	MSKCC	GRCh37	2	47604161	47604161	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	28	477	1	ENST00000263735.4:c.500A>T	p.Gln167Leu	p.Q167L	ENST00000263735	NM_002354.2	167	cAg/cTg																																																																														
EP300	0	MSKCC	GRCh37	22	41573264	41573264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	56	808	0	ENST00000263253.7:c.5549C>T	p.Pro1850Leu	p.P1850L	ENST00000263253	NM_001429.3	1850	cCc/cTc																																																																														
MST1R	0	MSKCC	GRCh37	3	49936542	49936542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	33	622	0	ENST00000296474.3:c.1385C>T	p.Ala462Val	p.A462V	ENST00000296474	NM_002447.2	462	gCa/gTa																																																																														
BCL6	0	MSKCC	GRCh37	3	187446989	187446989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	40	537	0	ENST00000232014.4:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000232014	NM_001130845.1	402	Cgc/Tgc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106545755	106545758	+	stop_gained	Nonsense_Mutation	ONP	AAAG	AAAG	CAAT			P-0018327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	68	643	0	ENST00000359195.3:c.3232_3235delAAAGinsCAAT	p.LysGly1078GlnTer	p.KG1078Q*	ENST00000359195	NM_002649.2	1078	AAAGga/CAATga																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	141	643	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	19	352	2	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	265	640	8	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	186	492	4	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578525	7578525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	928	898	4	ENST00000269305.4:c.405C>G	p.Cys135Trp	p.C135W	ENST00000269305	NM_001126112.2	135	tgC/tgG																																																																														
TET1	0	MSKCC	GRCh37	10	70450763	70450763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	51	542	0	ENST00000373644.4:c.5603C>T	p.Ala1868Val	p.A1868V	ENST00000373644	NM_030625.2	1868	gCc/gTc																																																																														
RB1	0	MSKCC	GRCh37	13	48878186	48878186	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	98	114	0	ENST00000267163.4:c.137+1G>A		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32163485	32163485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	289	573	2	ENST00000375023.3:c.5741G>A	p.Arg1914His	p.R1914H	ENST00000375023	NM_004557.3	1914	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	306	972	1	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804360	46804360	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	471	413	0	ENST00000290295.7:c.647G>T	p.Gly216Val	p.G216V	ENST00000290295	NM_006361.5	216	gGc/gTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101649	27101649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	274	803	0	ENST00000324856.7:c.4931G>T	p.Gly1644Val	p.G1644V	ENST00000324856	NM_006015.4	1644	gGc/gTc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32937626	32937626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	102	555	0	ENST00000380152.3:c.8287G>T	p.Asp2763Tyr	p.D2763Y	ENST00000380152		2763	Gat/Tat																																																																														
RB1	0	MSKCC	GRCh37	13	48941645	48941645	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	138	286	1	ENST00000267163.4:c.955A>T	p.Lys319Ter	p.K319*	ENST00000267163	NM_000321.2	319	Aaa/Taa																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988417	36988417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	115	264	0	ENST00000354822.5:c.236C>T	p.Pro79Leu	p.P79L	ENST00000354822	NM_001079668.2	79	cCa/cTa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222290	2222290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	263	846	0	ENST00000398665.3:c.3122C>G	p.Ala1041Gly	p.A1041G	ENST00000398665	NM_032482.2	1041	gCc/gGc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211150	36211150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	609	1007	1	ENST00000222270.7:c.901C>A	p.Leu301Ile	p.L301I	ENST00000222270	NM_014727.1	301	Ctc/Atc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31527010	31527010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	131	555	0	ENST00000344624.3:c.30G>T	p.Met10Ile	p.M10I	ENST00000344624		10	atG/atT																																																																														
BRAF	0	MSKCC	GRCh37	7	140476743	140476743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	84	393	0	ENST00000288602.6:c.1663G>C	p.Asp555His	p.D555H	ENST00000288602	NM_004333.4	555	Gat/Cat																																																																														
STK40	0	MSKCC	GRCh37	1	36809500	36809500	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	ACGGGCGA			P-0018331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	188	668	0	ENST00000373129.3:c.965delinsTCGCCCGT	p.Ala322ValfsTer31	p.A322Vfs*31	ENST00000373129	NM_032017.1	322	gCc/gTCGCCCGTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	42	559	1	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740488	58740488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	104	803	1	ENST00000305921.3:c.1393G>A	p.Val465Ile	p.V465I	ENST00000305921	NM_003620.3	465	Gtc/Atc																																																																														
RASA1	0	MSKCC	GRCh37	5	86645091	86645091	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	33	436	0	ENST00000274376.6:c.1163T>G	p.Leu388Arg	p.L388R	ENST00000274376	NM_002890.2	388	cTt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	172	607	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	211	492	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
ARID1A	0	MSKCC	GRCh37	1	27058033	27058033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	208	467	0	ENST00000324856.7:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000324856	NM_006015.4	581	Cag/Tag																																																																														
ROS1	0	MSKCC	GRCh37	6	117683924	117683924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	22	539	0	ENST00000368508.3:c.3223G>A	p.Glu1075Lys	p.E1075K	ENST00000368508	NM_002944.2	1075	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	230	532	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912482	32912482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	139	501	0	ENST00000380152.3:c.3990T>A	p.Asn1330Lys	p.N1330K	ENST00000380152		1330	aaT/aaA																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983373	15983373	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200574326		P-0018338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	19	393	0	ENST00000268712.3:c.3406G>A	p.Ala1136Thr	p.A1136T	ENST00000268712	NM_006311.3	1136	Gca/Aca																																																																														
TAP1	0	MSKCC	GRCh37	6	32813537	32813537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	32	339	0	ENST00000354258.4:c.2246C>T	p.Pro749Leu	p.P749L	ENST00000354258	NM_000593.5	749	cCt/cTt																																																																														
RB1	0	MSKCC	GRCh37	13	48919330	48919355	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAAAGGTAAAGTAAACATTTTATTA	GGAAAGGTAAAGTAAACATTTTATTA	-			P-0018338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	61	245	0	ENST00000267163.4:c.497_500+22delAAAGGTAAAGTAAACATTTTATTAGG		p.X166_splice	ENST00000267163	NM_000321.2	166																																																																															
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	158	548	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117888	70117888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	116	388	0	ENST00000245479.2:c.356C>T	p.Ala119Val	p.A119V	ENST00000245479	NM_000346.3	119	gCg/gTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11272526	11272526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	158	468	0	ENST00000361445.4:c.3404C>T	p.Ala1135Val	p.A1135V	ENST00000361445	NM_004958.3	1135	gCg/gTg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533869	63533869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	74	414	0	ENST00000307078.5:c.1285G>A	p.Gly429Ser	p.G429S	ENST00000307078	NM_004655.3	429	Ggc/Agc																																																																														
ERG	0	MSKCC	GRCh37	21	39755545	39755545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	60	311	0	ENST00000288319.7:c.1220C>A	p.Ser407Tyr	p.S407Y	ENST00000288319	NM_182918.3	407	tCt/tAt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789646	3789646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	67	947	2	ENST00000262367.5:c.4213G>T	p.Val1405Leu	p.V1405L	ENST00000262367	NM_004380.2	1405	Gtg/Ttg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168785	56168785	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	66	687	1	ENST00000399503.3:c.1639C>T	p.Gln547Ter	p.Q547*	ENST00000399503	NM_005921.1	547	Cag/Tag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177054	56177055	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0018342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	41	384	0	ENST00000399503.3:c.2326_2327delAT	p.Ile776CysfsTer4	p.I776Cfs*4	ENST00000399503	NM_005921.1	775	cAT/c																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	44	460	1	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	44	460	1	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	80	941	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	44	460	1	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45656878	45656878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	58	804	1	ENST00000407780.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000407780	NM_001283052.1	93	cGg/cAg																																																																														
RAD50	0	MSKCC	GRCh37	5	131973835	131973835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	51	606	0	ENST00000265335.6:c.3538C>T	p.Arg1180Trp	p.R1180W	ENST00000265335		1180	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	33	903	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0018352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	25	418	2	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577579	7577579	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	69	725	0	ENST00000269305.4:c.702C>A	p.Tyr234Ter	p.Y234*	ENST00000269305	NM_001126112.2	234	taC/taA																																																																														
APC	324	MSKCC	GRCh37	5	112175351	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	25	400	0	ENST00000257430.4:c.4063del	p.Ser1355LeufsTer60	p.S1355Lfs*60	ENST00000257430	NM_000038.5	1354	Ttt/tt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	79	770	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	210	582	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	75	657	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	38	398	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
IL7R	0	MSKCC	GRCh37	5	35867443	35867443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	27	615	1	ENST00000303115.3:c.257G>A	p.Arg86Lys	p.R86K	ENST00000303115	NM_002185.3	86	aGg/aAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	98	579	4	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589149	67589151	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	36	403	0	ENST00000274335.5:c.1138_1140delTTA	p.Leu380del	p.L380del	ENST00000274335		379	aaATTa/aaa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863319	57863319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	199	801	0	ENST00000228682.2:c.1418del	p.Gly473AlafsTer40	p.G473Afs*40	ENST00000228682	NM_005269.2	472	Ggg/gg																																																																														
KDM5A	0	MSKCC	GRCh37	12	459909	459909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	161	1060	3	ENST00000399788.2:c.1186C>T	p.Arg396Trp	p.R396W	ENST00000399788	NM_001042603.1	396	Cgg/Tgg																																																																														
RAD51D	0	MSKCC	GRCh37	17	33433425	33433425	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	157	920	2	ENST00000335858.7:c.220C>T	p.Arg74Ter	p.R74*	ENST00000335858	NM_133629.2	74	Cga/Tga																																																																														
MCL1	0	MSKCC	GRCh37	1	150551952	150551952	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	141	560	0	ENST00000369026.2:c.55delG	p.Ala19ProfsTer30	p.A19Pfs*30	ENST00000369026	NM_021960.4	19	Gcc/cc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021232	31021232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148964601		P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	59	685	2	ENST00000375687.4:c.1231C>T	p.Arg411Cys	p.R411C	ENST00000375687	NM_015338.5	411	Cgc/Tgc																																																																														
SOX17	0	MSKCC	GRCh37	8	55371810	55371831	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCCCCGAGGGCGGCCGCGT	TGGGCCCCGAGGGCGGCCGCGT	-			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	12	54	0	ENST00000297316.4:c.500_521del	p.Leu167ArgfsTer213	p.L167Rfs*213	ENST00000297316	NM_022454.3	167	cTGGGCCCCGAGGGCGGCCGCGTg/cg																																																																														
RARA	5914	MSKCC	GRCh37	17	38512370	38512370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	29	684	3	ENST00000254066.5:c.1286del	p.Gly429ValfsTer214	p.G429Vfs*214	ENST00000254066	NM_000964.3	427	ccG/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	155	943	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	64	1199	8	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	100	710	5	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
RECQL	0	MSKCC	GRCh37	12	21624530	21624530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	51	922	0	ENST00000421138.2:c.1499T>C	p.Leu500Pro	p.L500P	ENST00000421138		500	cTg/cCg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023852	27023852	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	26	231	1	ENST00000324856.7:c.961del	p.Gln321ArgfsTer42	p.Q321Rfs*42	ENST00000324856	NM_006015.4	320	Ccc/cc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843676	156843676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	121	1137	0	ENST00000524377.1:c.1102G>A	p.Gly368Ser	p.G368S	ENST00000524377	NM_002529.3	368	Ggc/Agc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925523	114925523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	79	818	3	ENST00000543371.1:c.1601C>T	p.Pro534Leu	p.P534L	ENST00000543371	NM_001198531.1	534	cCg/cTg																																																																														
LATS2	0	MSKCC	GRCh37	13	21562756	21562756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs12867400		P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	63	257	1	ENST00000382592.4:c.1163C>T	p.Ala388Val	p.A388V	ENST00000382592	NM_014572.2	388	gCg/gTg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972651	32972651	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	34	730	0	ENST00000380152.3:c.10001T>A	p.Leu3334Ter	p.L3334*	ENST00000380152		3334	tTg/tAg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435202	110435202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	54	871	1	ENST00000375856.3:c.3199G>T	p.Gly1067Trp	p.G1067W	ENST00000375856	NM_003749.2	1067	Ggg/Tgg																																																																														
IRS2	0	MSKCC	GRCh37	13	110436833	110436833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	80	896	0	ENST00000375856.3:c.1568C>A	p.Ser523Tyr	p.S523Y	ENST00000375856	NM_003749.2	523	tCc/tAc																																																																														
MALT1	0	MSKCC	GRCh37	18	56414976	56414976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	81	686	0	ENST00000348428.3:c.2377C>T	p.His793Tyr	p.H793Y	ENST00000348428	NM_006785.3	793	Cat/Tat																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228997	36228997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	93	718	1	ENST00000222270.7:c.7777C>T	p.Arg2593Cys	p.R2593C	ENST00000222270	NM_014727.1	2593	Cgc/Tgc																																																																														
CIC	0	MSKCC	GRCh37	19	42794917	42794917	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199751904		P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	47	685	1	ENST00000575354.2:c.1997G>A	p.Arg666His	p.R666H	ENST00000575354	NM_015125.3	666	cGt/cAt																																																																														
IRS1	0	MSKCC	GRCh37	2	227662527	227662527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	36	386	1	ENST00000305123.5:c.928G>A	p.Ala310Thr	p.A310T	ENST00000305123	NM_005544.2	310	Gcc/Acc																																																																														
U2AF1	0	MSKCC	GRCh37	21	44513304	44513304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	125	1066	4	ENST00000291552.4:c.631C>T	p.Arg211Cys	p.R211C	ENST00000291552	NM_006758.2	211	Cgt/Tgt																																																																														
CHEK2	0	MSKCC	GRCh37	22	29092944	29092944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	143	873	0	ENST00000328354.6:c.1040A>G	p.Asp347Gly	p.D347G	ENST00000328354	NM_007194.3	347	gAc/gGc																																																																														
TET2	0	MSKCC	GRCh37	4	106164038	106164038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	88	496	0	ENST00000380013.4:c.3548C>T	p.Thr1183Ile	p.T1183I	ENST00000380013	NM_001127208.2	1183	aCt/aTt																																																																														
TET2	0	MSKCC	GRCh37	4	106197096	106197096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	41	415	2	ENST00000380013.4:c.5429C>T	p.Ala1810Val	p.A1810V	ENST00000380013	NM_001127208.2	1810	gCt/gTt																																																																														
NPM1	0	MSKCC	GRCh37	5	170832387	170832387	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	21	202	0	ENST00000296930.5:c.751A>G	p.Met251Val	p.M251V	ENST00000296930	NM_002520.6	251	Atg/Gtg																																																																														
E2F3	0	MSKCC	GRCh37	6	20483062	20483062	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	88	563	0	ENST00000346618.3:c.795G>T	p.Glu265Asp	p.E265D	ENST00000346618	NM_001949.4	265	gaG/gaT																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858526	27858527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	49	293	0	ENST00000359303.2:c.44dup	p.Ala16GlyfsTer36	p.A16Gfs*36	ENST00000359303	NM_003535.2	15	aag/aaAg																																																																														
FANCC	0	MSKCC	GRCh37	9	97934381	97934381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	142	831	1	ENST00000289081.3:c.394G>T	p.Ala132Ser	p.A132S	ENST00000289081	NM_000136.2	132	Gct/Tct																																																																														
BTK	0	MSKCC	GRCh37	X	100630250	100630250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	73	478	1	ENST00000308731.7:c.23G>A	p.Ser8Asn	p.S8N	ENST00000308731	NM_000061.2	8	aGc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	218	918	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	36	642	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40899079	40899079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	286	691	2	ENST00000373198.4:c.2191G>A	p.Ala731Thr	p.A731T	ENST00000373198	NM_133170.3	731	Gcc/Acc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518250	8518250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	144	377	0	ENST00000356435.5:c.1141G>A	p.Ala381Thr	p.A381T	ENST00000356435		381	Gct/Act																																																																														
ELF3	0	MSKCC	GRCh37	1	201981773	201981774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	881	902	0	ENST00000359651.3:c.485_486dup	p.Ser163AlafsTer92	p.S163Afs*92	ENST00000359651		162	ggc/gGCgc																																																																														
ETV6	0	MSKCC	GRCh37	12	12038932	12038932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	279	794	0	ENST00000396373.4:c.1225A>G	p.Lys409Glu	p.K409E	ENST00000396373	NM_001987.4	409	Aag/Gag																																																																														
TP53	0	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0018354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	286	697	0	ENST00000269305.4:c.375+2T>C		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	26	710	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0018368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	19	609	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
FOXP1	0	MSKCC	GRCh37	3	71096126	71096126	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	21	363	0	ENST00000318789.4:c.631C>T	p.Gln211Ter	p.Q211*	ENST00000318789	NM_032682.5	211	Cag/Tag																																																																														
XRCC2	0	MSKCC	GRCh37	7	152346154	152346154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	74	817	0	ENST00000359321.1:c.416G>T	p.Ser139Ile	p.S139I	ENST00000359321	NM_005431.1	139	aGt/aTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	8	982	0	ENST00000269305.4:c.328C>T	p.Arg110Cys	p.R110C	ENST00000269305	NM_001126112.2	110	Cgt/Tgt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115918	8115919	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	67	686	0	ENST00000346208.3:c.1265dupT	p.Met422IlefsTer85	p.M422Ifs*85	ENST00000346208		422	atg/aTtg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348818	89348818	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	22	1270	2	ENST00000301030.4:c.4132delG	p.Glu1378LysfsTer31	p.E1378Kfs*31	ENST00000301030	NM_001256183.1	1378	Gaa/aa																																																																														
CDC73	0	MSKCC	GRCh37	1	193121549	193121549	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	342	511	0	ENST00000367435.3:c.947A>T	p.His316Leu	p.H316L	ENST00000367435	NM_024529.4	316	cAt/cTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445716	49445716	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	544	1681	0	ENST00000301067.7:c.1750C>G	p.Pro584Ala	p.P584A	ENST00000301067	NM_003482.3	584	Cca/Gca																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138382783	138382783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	276	775	2	ENST00000289153.2:c.2761C>T	p.His921Tyr	p.H921Y	ENST00000289153	NM_006219.2	921	Cat/Tat																																																																														
MTOR	0	MSKCC	GRCh37	1	11175503	11175503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	179	632	0	ENST00000361445.4:c.7039G>A	p.Asp2347Asn	p.D2347N	ENST00000361445	NM_004958.3	2347	Gac/Aac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	139	504	0	ENST00000324856.7:c.5547_5548dupGG	p.Asp1850GlyfsTer34	p.D1850Gfs*34	ENST00000324856	NM_006015.4	1847	-/GG																																																																														
JUN	0	MSKCC	GRCh37	1	59248391	59248391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	103	246	0	ENST00000371222.2:c.352C>A	p.Leu118Met	p.L118M	ENST00000371222	NM_002228.3	118	Ctg/Atg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851324	156851324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	249	776	0	ENST00000524377.1:c.2281C>T	p.Arg761Trp	p.R761W	ENST00000524377	NM_002529.3	761	Cgg/Tgg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720666	89720666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	100	419	0	ENST00000371953.3:c.820delT	p.Trp274GlyfsTer2	p.W274Gfs*2	ENST00000371953	NM_000314.4	273	Ttt/tt																																																																														
IGF2	0	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	215	735	3	ENST00000434045.2:c.686delC	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	211	645	3	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
PGR	0	MSKCC	GRCh37	11	100999713	100999713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	287	957	0	ENST00000325455.5:c.89G>A	p.Arg30His	p.R30H	ENST00000325455	NM_001202474.3	30	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	275	843	7	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	280	859	0	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	331	1014	2	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	267	749	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32971082	32971082	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	39	719	0	ENST00000380152.3:c.9549A>G	p.Ile3183Met	p.I3183M	ENST00000380152		3183	atA/atG																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43730569	43730569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	61	775	0	ENST00000382044.4:c.3144G>T	p.Arg1048Ser	p.R1048S	ENST00000382044	NM_001141980.1	1048	agG/agT																																																																														
IGF1R	0	MSKCC	GRCh37	15	99452055	99452055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	188	556	0	ENST00000268035.6:c.1389G>T	p.Glu463Asp	p.E463D	ENST00000268035	NM_000875.3	463	gaG/gaT																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	278	878	2	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																														
AXIN1	0	MSKCC	GRCh37	16	396590	396590	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	254	664	1	ENST00000262320.3:c.436C>T	p.Arg146Ter	p.R146*	ENST00000262320	NM_003502.3	146	Cga/Tga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274214	10274214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	115	360	1	ENST00000330684.3:c.55C>T	p.Arg19Cys	p.R19C	ENST00000330684	NM_001134407.1	19	Cgc/Tgc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	318	614	0	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	143	536	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7979022	7979022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	286	695	2	ENST00000319144.4:c.1545G>T	p.Glu515Asp	p.E515D	ENST00000319144	NM_001139.2	515	gaG/gaT																																																																														
NCOR1	0	MSKCC	GRCh37	17	15989613	15989613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	89	282	0	ENST00000268712.3:c.3160G>A	p.Gly1054Arg	p.G1054R	ENST00000268712	NM_006311.3	1054	Gga/Aga																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	137	471	14	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
NF1	0	MSKCC	GRCh37	17	29663368	29663370	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	160	521	0	ENST00000358273.4:c.6027_6029delTGT	p.Val2010del	p.V2010del	ENST00000358273	NM_001042492.2	2008	gaTGTt/gat																																																																														
RAD51D	0	MSKCC	GRCh37	17	33430316	33430316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28363283		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	293	804	1	ENST00000335858.7:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000335858	NM_133629.2	120	cGa/cAa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37873699	37873699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	301	796	1	ENST00000269571.5:c.1864G>A	p.Ala622Thr	p.A622T	ENST00000269571		622	Gca/Aca																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244787	41244787	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	262	892	2	ENST00000357654.3:c.2761C>T	p.Gln921Ter	p.Q921*	ENST00000357654	NM_007294.3	921	Cag/Tag																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	233	794	2	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805588	46805588	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201428095		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	325	1002	0	ENST00000290295.7:c.368G>A	p.Arg123His	p.R123H	ENST00000290295	NM_006361.5	123	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	362	555	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39609380	39609380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	136	526	0	ENST00000262039.4:c.1682G>A	p.Arg561His	p.R561H	ENST00000262039	NM_002647.2	561	cGc/cAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5245976	5245976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	249	732	0	ENST00000357368.4:c.799G>A	p.Val267Met	p.V267M	ENST00000357368	NM_002850.3	267	Gtg/Atg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123790	11123790	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	233	596	0	ENST00000344626.4:c.2438+2T>C		p.X813_splice	ENST00000344626	NM_003072.3	813																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11132635	11132635	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	286	851	2	ENST00000344626.4:c.2854delG	p.Glu952LysfsTer5	p.E952Kfs*5	ENST00000344626	NM_003072.3	951	Ggg/gg																																																																														
CALR	0	MSKCC	GRCh37	19	13049552	13049552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	248	628	0	ENST00000316448.5:c.59C>T	p.Ala20Val	p.A20V	ENST00000316448	NM_004343.3	20	gCc/gTc																																																																														
AXL	0	MSKCC	GRCh37	19	41737136	41737136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	89	996	6	ENST00000301178.4:c.716C>T	p.Thr239Met	p.T239M	ENST00000301178	NM_021913.4	239	aCg/aTg																																																																														
SOS1	0	MSKCC	GRCh37	2	39214651	39214651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	176	663	0	ENST00000402219.2:c.3473G>A	p.Arg1158Gln	p.R1158Q	ENST00000402219	NM_005633.3	1158	cGa/cAa																																																																														
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	197	694	1	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24129373	24129373	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	200	409	0	ENST00000263121.7:c.17T>C	p.Leu6Pro	p.L6P	ENST00000263121	NM_003073.3	6	cTg/cCg																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091740	29091740	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200649225		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	139	347	0	ENST00000328354.6:c.1217G>A	p.Arg406His	p.R406H	ENST00000328354	NM_007194.3	406	cGt/cAt																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665096	138665096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	24	414	0	ENST00000330315.3:c.469C>T	p.Pro157Ser	p.P157S	ENST00000330315	NM_023067.3	157	Ccc/Tcc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803121	1803121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	291	889	1	ENST00000260795.2:c.473G>A	p.Arg158Gln	p.R158Q	ENST00000260795		158	cGg/cAg																																																																														
KIT	0	MSKCC	GRCh37	4	55597561	55597561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	137	588	1	ENST00000288135.5:c.2209G>A	p.Asp737Asn	p.D737N	ENST00000288135	NM_000222.2	737	Gac/Aac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	231	630	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TERT	0	MSKCC	GRCh37	5	1294664	1294665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	57	331	2	ENST00000310581.5:c.336dupC	p.Glu113ArgfsTer79	p.E113Rfs*79	ENST00000310581	NM_198253.2	112	-/C																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	100	542	1	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	270	865	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
NPM1	0	MSKCC	GRCh37	5	170814986	170814986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	128	363	0	ENST00000296930.5:c.34C>A	p.Leu12Met	p.L12M	ENST00000296930	NM_002520.6	12	Ctg/Atg																																																																														
FLT4	0	MSKCC	GRCh37	5	180047941	180047941	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184409663		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	303	926	0	ENST00000261937.6:c.2234G>A	p.Arg745His	p.R745H	ENST00000261937	NM_182925.4	745	cGc/cAc																																																																														
FLT4	0	MSKCC	GRCh37	5	180057641	180057641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	291	934	0	ENST00000261937.6:c.314A>G	p.Asp105Gly	p.D105G	ENST00000261937	NM_182925.4	105	gAc/gGc																																																																														
FYN	0	MSKCC	GRCh37	6	112015839	112015839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	236	667	0	ENST00000368678.4:c.1102G>A	p.Ala368Thr	p.A368T	ENST00000368678		368	Gca/Aca																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	228	716	6	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	152	741	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
AGO2	0	MSKCC	GRCh37	8	141559284	141559284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	256	728	1	ENST00000220592.5:c.1517G>A	p.Arg506Gln	p.R506Q	ENST00000220592	NM_012154.3	506	cGg/cAg																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139396277	139396277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs878855028		P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	79	915	3	ENST00000277541.6:c.5561G>A	p.Arg1854His	p.R1854H	ENST00000277541	NM_017617.3	1854	cGc/cAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399278	139399278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	70	852	3	ENST00000277541.6:c.4865G>A	p.Arg1622His	p.R1622H	ENST00000277541	NM_017617.3	1622	cGc/cAc																																																																														
TRAF2	0	MSKCC	GRCh37	9	139818403	139818403	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	63	732	0	ENST00000247668.2:c.1238T>C	p.Val413Ala	p.V413A	ENST00000247668	NM_021138.3	413	gTg/gCg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63410472	63410472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	229	610	3	ENST00000330258.3:c.2695G>A	p.Ala899Thr	p.A899T	ENST00000330258	NM_152424.3	899	Gca/Aca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720648	89720649	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TA	TA	-			P-0018374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	46	463	0	ENST00000371953.3:c.802-3_802-2del		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	69	701	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	90	498	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	90	498	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																																																														
NEGR1	0	MSKCC	GRCh37	1	72400932	72400932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	47	665	0	ENST00000357731.5:c.239C>T	p.Ala80Val	p.A80V	ENST00000357731	NM_173808.2	80	gCg/gTg																																																																														
JUN	0	MSKCC	GRCh37	1	59248525	59248525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	49	598	0	ENST00000371222.2:c.218C>A	p.Ser73Ter	p.S73*	ENST00000371222	NM_002228.3	73	tCg/tAg																																																																														
TP53	0	MSKCC	GRCh37	17	7576926	7576927	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GC	GC	AA			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	80	573	1	ENST00000269305.4:c.920-1_920delGCinsTT		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
MEF2B	0	MSKCC	GRCh37	19	19256677	19256677	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	72	702	0	ENST00000162023.5:c.1036T>G	p.Ser346Ala	p.S346A	ENST00000162023		346	Tcc/Gcc																																																																														
TERT	0	MSKCC	GRCh37	5	1293800	1293800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	102	953	4	ENST00000310581.5:c.1201G>A	p.Ala401Thr	p.A401T	ENST00000310581	NM_198253.2	401	Gcg/Acg																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	352	777	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	116	407	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134825358	134825358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	125	508	0	ENST00000398015.3:c.874C>G	p.Arg292Gly	p.R292G	ENST00000398015	NM_004441.4	292	Cgc/Ggc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373700	118373700	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	54	604	0	ENST00000534358.1:c.7093A>G	p.Lys2365Glu	p.K2365E	ENST00000534358	NM_005933.3	2365	Aaa/Gaa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56488222	56488222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	243	576	0	ENST00000267101.3:c.1741G>C	p.Asp581His	p.D581H	ENST00000267101	NM_001982.3	581	Gat/Cat																																																																														
ERBB3	0	MSKCC	GRCh37	12	56493482	56493482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	256	583	0	ENST00000267101.3:c.2890G>C	p.Glu964Gln	p.E964Q	ENST00000267101	NM_001982.3	964	Gag/Cag																																																																														
ASXL2	0	MSKCC	GRCh37	2	25982365	25982365	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	94	261	0	ENST00000435504.4:c.925G>C	p.Glu309Gln	p.E309Q	ENST00000435504		309	Gag/Cag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198273282	198273282	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	74	628	0	ENST00000335508.6:c.928T>C	p.Trp310Arg	p.W310R	ENST00000335508	NM_012433.2	310	Tgg/Cgg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163671	32163671	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	123	378	0	ENST00000375023.3:c.5555delC	p.Pro1852ArgfsTer33	p.P1852Rfs*33	ENST00000375023	NM_004557.3	1852	cCg/cg																																																																														
PIM1	0	MSKCC	GRCh37	6	37141760	37141760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	70	731	0	ENST00000373509.5:c.835C>A	p.Pro279Thr	p.P279T	ENST00000373509	NM_002648.3	279	Cca/Aca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877127	151877127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	123	393	0	ENST00000262189.6:c.7234C>T	p.Pro2412Ser	p.P2412S	ENST00000262189	NM_170606.2	2412	Ccc/Tcc																																																																														
AMER1	0	MSKCC	GRCh37	X	63410079	63410079	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	134	593	0	ENST00000330258.3:c.3088A>T	p.Met1030Leu	p.M1030L	ENST00000330258	NM_152424.3	1030	Atg/Ttg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	126	744	2	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	67	750	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	82	723	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981888	201981888	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	105	960	0	ENST00000359651.3:c.598+1G>A		p.X200_splice	ENST00000359651		200																																																																															
INPPL1	0	MSKCC	GRCh37	11	71940516	71940516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	43	618	0	ENST00000298229.2:c.667G>A	p.Asp223Asn	p.D223N	ENST00000298229	NM_001567.3	223	Gac/Aac																																																																														
MGA	0	MSKCC	GRCh37	15	41961187	41961187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	34	538	1	ENST00000219905.7:c.95G>T	p.Gly32Val	p.G32V	ENST00000219905	NM_001164273.1	32	gGa/gTa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88799242	88799242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	46	812	0	ENST00000360948.2:c.143C>T	p.Pro48Leu	p.P48L	ENST00000360948	NM_001012338.2	48	cCg/cTg																																																																														
SUZ12	0	MSKCC	GRCh37	17	30302682	30302682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	24	806	0	ENST00000322652.5:c.773G>T	p.Gly258Val	p.G258V	ENST00000322652	NM_015355.2	258	gGa/gTa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41223081	41223081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	52	785	0	ENST00000357654.3:c.4850C>G	p.Ala1617Gly	p.A1617G	ENST00000357654	NM_007294.3	1617	gCt/gGt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223270	5223270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	44	743	1	ENST00000357368.4:c.2533G>A	p.Glu845Lys	p.E845K	ENST00000357368	NM_002850.3	845	Gag/Aag																																																																														
ERCC2	0	MSKCC	GRCh37	19	45858976	45858976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	66	775	0	ENST00000391945.4:c.1490G>A	p.Arg497His	p.R497H	ENST00000391945	NM_000400.3	497	cGt/cAt																																																																														
TOP1	0	MSKCC	GRCh37	20	39751920	39751920	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	23	601	0	ENST00000361337.2:c.2281G>T	p.Glu761Ter	p.E761*	ENST00000361337	NM_003286.2	761	Gaa/Taa																																																																														
CRKL	0	MSKCC	GRCh37	22	21288119	21288119	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148491827		P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	29	681	0	ENST00000354336.3:c.364G>A	p.Glu122Lys	p.E122K	ENST00000354336	NM_005207.3	122	Gaa/Aaa																																																																														
BCL6	0	MSKCC	GRCh37	3	187447785	187447785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	47	448	0	ENST00000232014.4:c.408C>G	p.Ile136Met	p.I136M	ENST00000232014	NM_001130845.1	136	atC/atG																																																																														
FAT1	0	MSKCC	GRCh37	4	187538900	187538901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	48	422	0	ENST00000441802.2:c.8839dupT	p.Ser2947PhefsTer2	p.S2947Ffs*2	ENST00000441802	NM_005245.3	2947	tct/tTct																																																																														
BCOR	0	MSKCC	GRCh37	X	39913212	39913212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	39	730	1	ENST00000378444.4:c.4903G>A	p.Asp1635Asn	p.D1635N	ENST00000378444	NM_001123385.1	1635	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	17	739	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	103	570	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	15	779	2	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	117	594	0	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																														
FGFR2	0	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	104	722	0	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088800	27088800	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0018385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	106	512	0	ENST00000324856.7:c.2409T>G	p.Tyr803Ter	p.Y803*	ENST00000324856	NM_006015.4	803	taT/taG																																																																														
PTEN	0	MSKCC	GRCh37	10	89692818	89692820	+	frameshift_variant	Frame_Shift_Del	DEL	TCA	TCA	CC			P-0018385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	135	382	2	ENST00000371953.3:c.302_304delTCAinsCC	p.Ile101ThrfsTer12	p.I101Tfs*12	ENST00000371953	NM_000314.4	101	aTCAaa/aCCaa																																																																														
SOCS1	0	MSKCC	GRCh37	16	11349179	11349179	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	21	150	0	ENST00000332029.2:c.157A>T	p.Thr53Ser	p.T53S	ENST00000332029	NM_003745.1	53	Acg/Tcg																																																																														
SOS1	0	MSKCC	GRCh37	2	39250162	39250162	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	155	912	0	ENST00000402219.2:c.1407T>G	p.Ile469Met	p.I469M	ENST00000402219	NM_005633.3	469	atT/atG																																																																														
SOS1	0	MSKCC	GRCh37	2	39278407	39278407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	102	818	0	ENST00000402219.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000402219	NM_005633.3	248	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0018386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	216	894	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55259554	55259554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	206	802	0	ENST00000275493.2:c.2612C>G	p.Ala871Gly	p.A871G	ENST00000275493	NM_005228.3	871	gCa/gGa																																																																														
TP53	0	MSKCC	GRCh37	17	7578234	7578234	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0018386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	99	965	0	ENST00000269305.4:c.615T>G	p.Tyr205Ter	p.Y205*	ENST00000269305	NM_001126112.2	205	taT/taG																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	191	618	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99459340	99459340	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	46	370	0	ENST00000268035.6:c.1976G>C	p.Arg659Pro	p.R659P	ENST00000268035	NM_000875.3	659	cGg/cCg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	192	377	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0018392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	101	283	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	372	466	0	ENST00000269305.4:c.810T>G	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttG																																																																														
NF1	0	MSKCC	GRCh37	17	29557891	29557892	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	46	80	0	ENST00000358273.4:c.3147dup	p.Met1050TyrfsTer10	p.M1050Yfs*10	ENST00000358273	NM_001042492.2	1049	gtt/gTtt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101151	27101151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	198	558	0	ENST00000324856.7:c.4433C>T	p.Pro1478Leu	p.P1478L	ENST00000324856	NM_006015.4	1478	cCa/cTa																																																																														
IL10	0	MSKCC	GRCh37	1	206941993	206941993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	36	220	0	ENST00000423557.1:c.525G>T	p.Lys175Asn	p.K175N	ENST00000423557	NM_000572.2	175	aaG/aaT																																																																														
PTEN	0	MSKCC	GRCh37	10	89711907	89711908	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	169	473	0	ENST00000371953.3:c.526dup	p.Tyr176LeufsTer4	p.Y176Lfs*4	ENST00000371953	NM_000314.4	175	-/T																																																																														
TBX3	0	MSKCC	GRCh37	12	115114249	115114250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	109	414	0	ENST00000257566.3:c.967dup	p.Arg323LysfsTer4	p.R323Kfs*4	ENST00000257566	NM_016569.3	323	agg/aAgg																																																																														
STAT3	0	MSKCC	GRCh37	17	40474476	40474476	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	36	350	0	ENST00000264657.5:c.1925A>C	p.Lys642Thr	p.K642T	ENST00000264657	NM_139276.2	642	aAg/aCg																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39609379	39609379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	168	354	0	ENST00000262039.4:c.1681C>T	p.Arg561Cys	p.R561C	ENST00000262039	NM_002647.2	561	Cgc/Tgc																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643296	38643296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	67	409	0	ENST00000299084.4:c.766C>T	p.Arg256Cys	p.R256C	ENST00000299084	NM_152594.2	256	Cgt/Tgt																																																																														
NF1	0	MSKCC	GRCh37	17	29556908	29556908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	22	183	0	ENST00000358273.4:c.2906A>G	p.Lys969Arg	p.K969R	ENST00000358273	NM_001042492.2	969	aAg/aGg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243753	41243753	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	73	402	0	ENST00000357654.3:c.3795T>G	p.Asn1265Lys	p.N1265K	ENST00000357654	NM_007294.3	1265	aaT/aaG																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	329	404	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	96	318	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	246	339	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
KIT	0	MSKCC	GRCh37	4	55599332	55599332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	15	305	0	ENST00000288135.5:c.2458G>T	p.Asp820Tyr	p.D820Y	ENST00000288135	NM_000222.2	820	Gat/Tat																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023156	27023172	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGGCAGCGGCGGCGG	GCCGGCAGCGGCGGCGG	-			P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	102	63	0	ENST00000324856.7:c.265_281del	p.Gly89ArgfsTer16	p.G89Rfs*16	ENST00000324856	NM_006015.4	88	GCCGGCAGCGGCGGCGGg/g																																																																														
MGA	0	MSKCC	GRCh37	15	42041743	42041743	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	117	265	2	ENST00000219905.7:c.5938del	p.Glu1980LysfsTer5	p.E1980Kfs*5	ENST00000219905	NM_001164273.1	1980	Gaa/aa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584593	48584593	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	139	347	0	ENST00000342988.3:c.766del	p.Gln256SerfsTer80	p.Q256Sfs*80	ENST00000342988	NM_005359.5	256	Cag/ag																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67201869	67201869	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	106	395	0	ENST00000312629.5:c.1069C>G	p.Gln357Glu	p.Q357E	ENST00000312629	NM_003952.2	357	Cag/Gag																																																																														
TP53	0	MSKCC	GRCh37	17	7579401	7579401	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	129	468	0	ENST00000269305.4:c.286del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	Tct/ct																																																																														
MED12	0	MSKCC	GRCh37	X	70342124	70342131	+	frameshift_variant	Frame_Shift_Del	DEL	ACCACTTG	ACCACTTG	-			P-0018401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	115	427	0	ENST00000374080.3:c.1184_1191del	p.Asp395AlafsTer13	p.D395Afs*13	ENST00000374080		392	tcACCACTTGac/tcac																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	245	433	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	219	502	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
AMER1	0	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	359	324	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591148	67591149	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGA			P-0018402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	128	280	0	ENST00000274335.5:c.1744_1745+1dup		p.L582_M583dup	ENST00000274335		582	ttg/tTGAtg																																																																														
APC	0	MSKCC	GRCh37	5	112175108	112175108	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	118	227	0	ENST00000257430.4:c.3817A>T	p.Arg1273Ter	p.R1273*	ENST00000257430	NM_000038.5	1273	Aga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	85	528	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	182	584	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0018412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	324	410	1	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
POLD1	0	MSKCC	GRCh37	19	50906446	50906446	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	141	609	0	ENST00000440232.2:c.1107G>T	p.Gln369His	p.Q369H	ENST00000440232	NM_002691.3	369	caG/caT																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32182003	32182003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	122	646	0	ENST00000375023.3:c.2051C>T	p.Thr684Met	p.T684M	ENST00000375023	NM_004557.3	684	aCg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	142	428	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0018414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	248	633	2	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
EED	0	MSKCC	GRCh37	11	85979599	85979599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	135	343	0	ENST00000263360.6:c.962C>T	p.Ser321Phe	p.S321F	ENST00000263360	NM_003797.3	321	tCt/tTt																																																																														
CDH1	0	MSKCC	GRCh37	16	68856129	68856129	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	135	525	0	ENST00000261769.5:c.1936+1G>T		p.X646_splice	ENST00000261769	NM_004360.3	646																																																																															
BCOR	0	MSKCC	GRCh37	X	39913220	39913221	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0018414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	147	528	2	ENST00000378444.4:c.4894_4895delinsTT	p.Ala1632Phe	p.A1632F	ENST00000378444	NM_001123385.1	1632	GCc/TTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	494	750	0	ENST00000269305.4:c.815T>A	p.Val272Glu	p.V272E	ENST00000269305	NM_001126112.2	272	gTg/gAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420976	49421030	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAAGGTGCCAAGGGGGAAGGGGGCGGGGAGGGTTCTTCAGGAGGTGGGGCCGA	GAGAAGGTGCCAAGGGGGAAGGGGGCGGGGAGGGTTCTTCAGGAGGTGGGGCCGA	-			P-0018416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	145	364	0	ENST00000301067.7:c.14719_14773del	p.Ser4907LeufsTer70	p.S4907Lfs*70	ENST00000301067	NM_003482.3	4907	TCGGCCCCACCTCCTGAAGAACCCTCCCCGCCCCCTTCCCCCTTGGCACCTTCTCct/ct																																																																														
STK11	0	MSKCC	GRCh37	19	1219404	1219430	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCCACGGGTGCGTGCGCGGGGCAGG	GGCCCACGGGTGCGTGCGCGGGGCAGG	-			P-0018416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	143	472	1	ENST00000326873.7:c.460_464+22del		p.X154_splice	ENST00000326873	NM_000455.4	154																																																																															
STK11	0	MSKCC	GRCh37	19	1220598	1220598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	210	524	2	ENST00000326873.7:c.616G>T	p.Ala206Ser	p.A206S	ENST00000326873	NM_000455.4	206	Gcg/Tcg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157520000	157520003	+	frameshift_variant	Frame_Shift_Ins	INS	CCGT	CCGT	AGGGCACC			P-0018416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	128	522	0	ENST00000346085.5:c.4069_4072delinsAGGGCACC	p.Pro1357ArgfsTer103	p.P1357Rfs*103	ENST00000346085	NM_020732.3	1357	CCGTat/AGGGCACCat																																																																														
INPPL1	0	MSKCC	GRCh37	11	71939786	71939797	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCCCCGCTGC	AGCCCCCGCTGC	G			P-0018416-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	208	735	0	ENST00000298229.2:c.413_424delinsG	p.Lys138SerfsTer23	p.K138Sfs*23	ENST00000298229	NM_001567.3	138	aAGCCCCCGCTGCcc/aGcc																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	40	488	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	139	535	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	140	302	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	164	201	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
ERBB4	0	MSKCC	GRCh37	2	212285327	212285327	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143134749		P-0018419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	100	267	2	ENST00000342788.4:c.2974C>T	p.Arg992Cys	p.R992C	ENST00000342788	NM_005235.2	992	Cgt/Tgt																																																																														
FAT1	0	MSKCC	GRCh37	4	187522573	187522581	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TGAACTCCC	TGAACTCCC	-			P-0018419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	54	186	0	ENST00000441802.2:c.11483-1_11490del		p.X3828_splice	ENST00000441802	NM_005245.3	3828																																																																															
KMT2D	0	MSKCC	GRCh37	12	49426058	49426058	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	180	282	0	ENST00000301067.7:c.12430C>T	p.Gln4144Ter	p.Q4144*	ENST00000301067	NM_003482.3	4144	Cag/Tag																																																																														
BABAM1	0	MSKCC	GRCh37	19	17379674	17379674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	169	194	0	ENST00000359435.4:c.59C>T	p.Ser20Leu	p.S20L	ENST00000359435	NM_001033549.1	20	tCg/tTg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153250846	153250846	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	155	301	0	ENST00000281708.4:c.1214T>A	p.Val405Asp	p.V405D	ENST00000281708	NM_033632.3	405	gTt/gAt																																																																														
TEK	0	MSKCC	GRCh37	9	27217701	27217701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	148	285	0	ENST00000380036.4:c.3007C>T	p.Arg1003Cys	p.R1003C	ENST00000380036	NM_000459.3	1003	Cgc/Tgc																																																																														
KIT	0	MSKCC	GRCh37	4	55599332	55599332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	3779	537	0	ENST00000288135.5:c.2458G>T	p.Asp820Tyr	p.D820Y	ENST00000288135	NM_000222.2	820	Gat/Tat																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	271	530	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
LATS1	0	MSKCC	GRCh37	6	150004451	150004451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	59	322	0	ENST00000253339.5:c.1774G>A	p.Glu592Lys	p.E592K	ENST00000253339		592	Gag/Aag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251860	212251860	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	27	253	0	ENST00000342788.4:c.3199C>T	p.Arg1067Ter	p.R1067*	ENST00000342788	NM_005235.2	1067	Cga/Tga																																																																														
ETV6	0	MSKCC	GRCh37	12	11992206	11992206	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	286	379	1	ENST00000396373.4:c.296A>T	p.Lys99Ile	p.K99I	ENST00000396373	NM_001987.4	99	aAa/aTa																																																																														
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	385	416	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
BAP1	0	MSKCC	GRCh37	3	52437846	52437846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	436	433	1	ENST00000460680.1:c.1315G>A	p.Val439Met	p.V439M	ENST00000460680	NM_004656.3	439	Gtg/Atg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52675969	52675978	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCAGCTAAAG	CCAGCTAAAG	-			P-0018435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	30	375	0	ENST00000394830.3:c.1079_1087+1del		p.X360_splice	ENST00000394830	NM_018313.4	360																																																																															
RAD21	0	MSKCC	GRCh37	8	117874084	117874087	+	frameshift_variant	Frame_Shift_Del	DEL	AGTC	AGTC	-			P-0018435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	109	239	0	ENST00000297338.2:c.367_370del	p.Asp123Ter	p.D123*	ENST00000297338	NM_006265.2	123	GACTta/ta																																																																														
RBM10	0	MSKCC	GRCh37	X	47045754	47045754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	60	248	1	ENST00000329236.7:c.2401C>T	p.Arg801Cys	p.R801C	ENST00000329236	NM_001204466.1	801	Cgc/Tgc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	62	400	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	116	272	2	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	231	312	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	57	282	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
CASP8	0	MSKCC	GRCh37	2	202149728	202149728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	101	395	0	ENST00000358485.4:c.1173del	p.Ile392SerfsTer4	p.I392Sfs*4	ENST00000358485	NM_001080125.1	390	gCc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	146	370	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	119	300	2	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	55	319	2	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																																																														
STAT3	0	MSKCC	GRCh37	17	40486032	40486032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	138	387	0	ENST00000264657.5:c.833G>A	p.Arg278His	p.R278H	ENST00000264657	NM_139276.2	278	cGt/cAt																																																																														
SYK	0	MSKCC	GRCh37	9	93606304	93606304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	151	402	0	ENST00000375746.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000375746	NM_001174167.1	42	Cgc/Tgc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	148	328	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434959	49434959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	179	252	0	ENST00000301067.7:c.6594del	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2198	ccC/cc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427611	49427611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	147	204	0	ENST00000301067.7:c.10877G>A	p.Arg3626Gln	p.R3626Q	ENST00000301067	NM_003482.3	3626	cGg/cAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432420	49432420	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	197	438	0	ENST00000301067.7:c.8719del	p.Tyr2907ThrfsTer3	p.Y2907Tfs*3	ENST00000301067	NM_003482.3	2907	Tac/ac																																																																														
ERCC5	0	MSKCC	GRCh37	13	103513899	103513899	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	58	329	0	ENST00000355739.4:c.719del	p.Lys240ArgfsTer4	p.K240Rfs*4	ENST00000355739	NM_000123.3	239	Aaa/aa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349024	89349024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	184	481	2	ENST00000301030.4:c.3926C>T	p.Thr1309Met	p.T1309M	ENST00000301030	NM_001256183.1	1309	aCg/aTg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16005005	16005005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	155	419	1	ENST00000268712.3:c.2249C>T	p.Ala750Val	p.A750V	ENST00000268712	NM_006311.3	750	gCg/gTg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78914339	78914339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147686617		P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	166	418	0	ENST00000306801.3:c.2963G>A	p.Arg988Gln	p.R988Q	ENST00000306801	NM_020761.2	988	cGg/cAg																																																																														
PMS1	0	MSKCC	GRCh37	2	190719437	190719437	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	38	257	0	ENST00000441310.2:c.1442del	p.Asn481MetfsTer35	p.N481Mfs*35	ENST00000441310	NM_000534.4	480	gAa/ga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30733031	30733031	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	116	318	0	ENST00000359013.4:c.1722del	p.Arg575GlyfsTer14	p.R575Gfs*14	ENST00000359013	NM_001024847.2	573	tcG/tc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499477	89499477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	89	313	1	ENST00000336596.2:c.2647C>T	p.Arg883Trp	p.R883W	ENST00000336596	NM_005233.5	883	Cgg/Tgg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807536	1807536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	133	382	0	ENST00000260795.2:c.1705G>A	p.Ala569Thr	p.A569T	ENST00000260795		569	Gcg/Acg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1918615	1918615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	109	338	0	ENST00000382891.5:c.778C>T	p.Arg260Cys	p.R260C	ENST00000382891	NM_133335.3	260	Cgc/Tgc																																																																														
FAM175A	0	MSKCC	GRCh37	4	84391358	84391358	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	44	308	0	ENST00000321945.7:c.474del	p.Gly159AspfsTer8	p.G159Dfs*8	ENST00000321945	NM_139076.2	158	aaA/aa																																																																														
FLT4	0	MSKCC	GRCh37	5	180048145	180048145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	325	428	1	ENST00000261937.6:c.2128G>A	p.Val710Met	p.V710M	ENST00000261937	NM_182925.4	710	Gtg/Atg																																																																														
TAP1	0	MSKCC	GRCh37	6	32818266	32818266	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	164	365	0	ENST00000354258.4:c.1259T>C	p.Leu420Pro	p.L420P	ENST00000354258	NM_000593.5	420	cTg/cCg																																																																														
TAP1	0	MSKCC	GRCh37	6	32820202	32820202	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	134	403	0	ENST00000354258.4:c.856C>T	p.Arg286Ter	p.R286*	ENST00000354258	NM_000593.5	286	Cga/Tga																																																																														
TAP1	0	MSKCC	GRCh37	6	32821277	32821278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	165	474	0	ENST00000354258.4:c.316dup	p.Leu106ProfsTer82	p.L106Pfs*82	ENST00000354258	NM_000593.5	106	ctg/cCtg																																																																														
DAXX	0	MSKCC	GRCh37	6	33288636	33288636	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	89	191	0	ENST00000374542.5:c.916C>T	p.Arg306Ter	p.R306*	ENST00000374542	NM_001141970.1	306	Cga/Tga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341970	8341970	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	40	238	0	ENST00000356435.5:c.4670T>A	p.Val1557Asp	p.V1557D	ENST00000356435		1557	gTt/gAt																																																																														
FANCC	0	MSKCC	GRCh37	9	97888841	97888841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	86	422	1	ENST00000289081.3:c.866C>T	p.Ala289Val	p.A289V	ENST00000289081	NM_000136.2	289	gCc/gTc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	54	183	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	20	148	1	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	23	53	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	83	280	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	106	229	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
MYOD1	0	MSKCC	GRCh37	11	17742463	17742463	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	75	317	0	ENST00000250003.3:c.650delC	p.Pro217ArgfsTer33	p.P217Rfs*33	ENST00000250003	NM_002478.4	215	ggC/gg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	85	334	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	94	334	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	38	196	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	23	267	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	95	337	0	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
AXL	0	MSKCC	GRCh37	19	41744385	41744385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	74	302	0	ENST00000301178.4:c.1010delC	p.Pro337LeufsTer29	p.P337Lfs*29	ENST00000301178	NM_021913.4	335	ggC/gg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	85	359	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
RASA1	0	MSKCC	GRCh37	5	86564530	86564530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	46	207	0	ENST00000274376.6:c.266del	p.Gly89GlufsTer7	p.G89Efs*7	ENST00000274376	NM_002890.2	88	Ggg/gg																																																																														
CIC	0	MSKCC	GRCh37	19	42795269	42795269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	82	267	2	ENST00000575354.2:c.2353delG	p.Ala785ProfsTer139	p.A785Pfs*139	ENST00000575354	NM_015125.3	783	caG/ca																																																																														
CTCF	0	MSKCC	GRCh37	16	67645893	67645893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	86	313	1	ENST00000264010.4:c.821C>T	p.Thr274Met	p.T274M	ENST00000264010	NM_006565.3	274	aCg/aTg																																																																														
SETD2	0	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	41	222	0	ENST00000409792.3:c.843delA	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737579	145737579	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199658221		P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	86	386	2	ENST00000428558.2:c.3184C>T	p.Arg1062Trp	p.R1062W	ENST00000428558	NM_004260.3	1062	Cgg/Tgg																																																																														
CTCF	0	MSKCC	GRCh37	16	67646013	67646014	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	57	330	0	ENST00000264010.4:c.950_951delCA	p.Thr317ArgfsTer91	p.T317Rfs*91	ENST00000264010	NM_006565.3	314	aAC/a																																																																														
FLCN	0	MSKCC	GRCh37	17	17125941	17125941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	81	343	0	ENST00000285071.4:c.653G>A	p.Arg218His	p.R218H	ENST00000285071	NM_144997.5	218	cGt/cAt																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	91	361	0	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																														
FYN	0	MSKCC	GRCh37	6	112020818	112020819	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	50	270	0	ENST00000368678.4:c.752dupC	p.Gln252ThrfsTer7	p.Q252Tfs*7	ENST00000368678		251	cca/ccCa																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46546324	46546324	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	48	223	0	ENST00000262741.5:c.205del	p.Asp69IlefsTer7	p.D69Ifs*7	ENST00000262741	NM_003629.3	69	Gat/at																																																																														
SPEN	0	MSKCC	GRCh37	1	16256321	16256321	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	58	391	0	ENST00000375759.3:c.3591del	p.Asp1198MetfsTer2	p.D1198Mfs*2	ENST00000375759	NM_015001.2	1196	Aaa/aa																																																																														
MTOR	0	MSKCC	GRCh37	1	11270924	11270924	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	69	292	2	ENST00000361445.4:c.3601C>T	p.Arg1201Ter	p.R1201*	ENST00000361445	NM_004958.3	1201	Cga/Tga																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228997	36228997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	99	313	1	ENST00000222270.7:c.7777C>T	p.Arg2593Cys	p.R2593C	ENST00000222270	NM_014727.1	2593	Cgc/Tgc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120506416	120506416	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	80	291	0	ENST00000256646.2:c.1696T>A	p.Leu566Met	p.L566M	ENST00000256646	NM_024408.3	566	Ttg/Atg																																																																														
DDR2	0	MSKCC	GRCh37	1	162746113	162746113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	86	172	0	ENST00000367921.3:c.2236C>T	p.Arg746Trp	p.R746W	ENST00000367921	NM_006182.2	746	Cgg/Tgg																																																																														
MEN1	0	MSKCC	GRCh37	11	64572519	64572519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	94	341	2	ENST00000337652.1:c.1352G>A	p.Arg451His	p.R451H	ENST00000337652	NM_130803.2	451	cGt/cAt																																																																														
ATM	0	MSKCC	GRCh37	11	108126987	108126987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	78	336	0	ENST00000278616.4:c.2170G>T	p.Gly724Cys	p.G724C	ENST00000278616	NM_000051.3	724	Ggt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108151890	108151890	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	36	189	0	ENST00000278616.4:c.3575del	p.Lys1192ArgfsTer3	p.K1192Rfs*3	ENST00000278616	NM_000051.3	1191	Aaa/aa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344954	118344955	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	43	205	0	ENST00000534358.1:c.3086dup	p.Ala1030GlyfsTer9	p.A1030Gfs*9	ENST00000534358	NM_005933.3	1027	cta/ctAa																																																																														
CBL	0	MSKCC	GRCh37	11	119169151	119169151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	45	297	0	ENST00000264033.4:c.2335C>T	p.Pro779Ser	p.P779S	ENST00000264033	NM_005188.3	779	Cca/Tca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435048	49435048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	50	247	0	ENST00000301067.7:c.6505G>A	p.Ala2169Thr	p.A2169T	ENST00000301067	NM_003482.3	2169	Gcc/Acc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906576	32906576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	68	277	1	ENST00000380152.3:c.961C>A	p.Gln321Lys	p.Q321K	ENST00000380152		321	Caa/Aaa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914509	32914509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	37	345	0	ENST00000380152.3:c.6017G>A	p.Ser2006Asn	p.S2006N	ENST00000380152		2006	aGt/aAt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88679181	88679182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	91	312	0	ENST00000360948.2:c.855dup	p.Ala286CysfsTer29	p.A286Cfs*29	ENST00000360948	NM_001012338.2	285	-/T																																																																														
CDH1	0	MSKCC	GRCh37	16	68835765	68835766	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	111	324	0	ENST00000261769.5:c.360dup	p.His121AlafsTer47	p.H121Afs*47	ENST00000261769	NM_004360.3	119	gtg/gtGg																																																																														
FANCA	0	MSKCC	GRCh37	16	89805059	89805059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	66	317	0	ENST00000389301.3:c.4318C>T	p.Gln1440Ter	p.Q1440*	ENST00000389301	NM_000135.2	1440	Cag/Tag																																																																														
DNMT1	0	MSKCC	GRCh37	19	10249172	10249172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	84	400	1	ENST00000340748.4:c.4010G>T	p.Arg1337Leu	p.R1337L	ENST00000340748		1337	cGg/cTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15290288	15290288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	89	403	0	ENST00000263388.2:c.3347G>A	p.Gly1116Asp	p.G1116D	ENST00000263388	NM_000435.2	1116	gGt/gAt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279956	18279956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	123	403	0	ENST00000222254.8:c.2039C>T	p.Ala680Val	p.A680V	ENST00000222254	NM_005027.3	680	gCg/gTg																																																																														
POLD1	0	MSKCC	GRCh37	19	50916690	50916690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	88	315	0	ENST00000440232.2:c.2162C>T	p.Thr721Met	p.T721M	ENST00000440232	NM_002691.3	721	aCg/aTg																																																																														
EPAS1	0	MSKCC	GRCh37	2	46583861	46583861	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	74	315	0	ENST00000263734.3:c.370-2A>G		p.X124_splice	ENST00000263734	NM_001430.4	124																																																																															
ERBB4	0	MSKCC	GRCh37	2	212587225	212587225	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	77	249	0	ENST00000342788.4:c.776T>C	p.Val259Ala	p.V259A	ENST00000342788	NM_005235.2	259	gTt/gCt																																																																														
IRS1	0	MSKCC	GRCh37	2	227662623	227662623	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	66	256	0	ENST00000305123.5:c.832A>G	p.Asn278Asp	p.N278D	ENST00000305123	NM_005544.2	278	Aac/Gac																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306715	41306715	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	60	304	0	ENST00000373198.4:c.944T>C	p.Ile315Thr	p.I315T	ENST00000373198	NM_133170.3	315	aTc/aCc																																																																														
PPARG	0	MSKCC	GRCh37	3	12458344	12458344	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	93	352	0	ENST00000287820.6:c.961del	p.Val321CysfsTer15	p.V321Cfs*15	ENST00000287820	NM_015869.4	321	Gtg/tg																																																																														
BAP1	0	MSKCC	GRCh37	3	52436387	52436387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	81	298	0	ENST00000460680.1:c.2107G>T	p.Gly703Trp	p.G703W	ENST00000460680	NM_004656.3	703	Ggg/Tgg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528554	89528554	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	45	154	0	ENST00000336596.2:c.2858del	p.Lys953ArgfsTer20	p.K953Rfs*20	ENST00000336596	NM_005233.5	952	Aaa/aa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1978338	1978338	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	93	322	0	ENST00000382891.5:c.3758T>G	p.Leu1253Arg	p.L1253R	ENST00000382891	NM_133335.3	1253	cTg/cGg																																																																														
PLK2	0	MSKCC	GRCh37	5	57753127	57753127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	40	201	0	ENST00000274289.3:c.889T>C	p.Tyr297His	p.Y297H	ENST00000274289	NM_006622.3	297	Tat/Cat																																																																														
MSH3	0	MSKCC	GRCh37	5	80064780	80064780	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	52	325	0	ENST00000265081.6:c.2216del	p.Asn739IlefsTer7	p.N739Ifs*7	ENST00000265081	NM_002439.4	737	ctA/ct																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839873	27839874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	40	262	0	ENST00000328488.2:c.220dup	p.Glu74GlyfsTer7	p.E74Gfs*7	ENST00000328488	NM_003533.2	74	gag/gGag																																																																														
MDC1	0	MSKCC	GRCh37	6	30671194	30671194	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	77	335	0	ENST00000376406.3:c.5682+1del		p.X1894_splice	ENST00000376406	NM_014641.2	1894																																																																															
HLA-B	0	MSKCC	GRCh37	6	31323352	31323352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	62	236	0	ENST00000412585.2:c.637G>A	p.Val213Met	p.V213M	ENST00000412585	NM_005514.6	213	Gtg/Atg																																																																														
PRDM1	0	MSKCC	GRCh37	6	106552930	106552930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	69	394	0	ENST00000369096.4:c.895T>C	p.Tyr299His	p.Y299H	ENST00000369096	NM_001198.3	299	Tac/Cac																																																																														
HGF	0	MSKCC	GRCh37	7	81388044	81388045	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	47	346	0	ENST00000222390.5:c.330dup	p.Glu111ArgfsTer5	p.E111Rfs*5	ENST00000222390	NM_000601.4	110	-/A																																																																														
TEK	0	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	98	434	0	ENST00000380036.4:c.1250delC	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																														
STAG2	0	MSKCC	GRCh37	X	123202471	123202471	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	56	149	0	ENST00000218089.9:c.2323T>C	p.Tyr775His	p.Y775H	ENST00000218089	NM_001042749.1	775	Tac/Cac																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	134	308	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	118	401	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	202	289	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120226	70120226	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	262	518	1	ENST00000245479.2:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000245479	NM_000346.3	410	Cag/Tag																																																																														
FLT3	0	MSKCC	GRCh37	13	28602329	28602329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	60	302	2	ENST00000241453.7:c.2039C>T	p.Ala680Val	p.A680V	ENST00000241453	NM_004119.2	680	gCg/gTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	317	491	5	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
SYK	0	MSKCC	GRCh37	9	93606334	93606334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	215	369	1	ENST00000375746.1:c.154G>A	p.Ala52Thr	p.A52T	ENST00000375746	NM_001174167.1	52	Gcc/Acc																																																																														
PGR	0	MSKCC	GRCh37	11	100999304	100999304	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	246	449	0	ENST00000325455.5:c.498C>G	p.Ser166Arg	p.S166R	ENST00000325455	NM_001202474.3	166	agC/agG																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482828	67482828	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	389	336	0	ENST00000327367.4:c.1232T>A	p.Leu411His	p.L411H	ENST00000327367	NM_005902.3	411	cTc/cAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830778	72830778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	174	332	2	ENST00000268489.5:c.5803C>T	p.Arg1935Cys	p.R1935C	ENST00000268489	NM_006885.3	1935	Cgc/Tgc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72923762	72923762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	177	325	0	ENST00000268489.5:c.3316C>T	p.His1106Tyr	p.H1106Y	ENST00000268489	NM_006885.3	1106	Cat/Tat																																																																														
APC	0	MSKCC	GRCh37	5	112170679	112170679	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	190	226	0	ENST00000257430.4:c.1775T>G	p.Leu592Ter	p.L592*	ENST00000257430	NM_000038.5	592	tTa/tGa																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519466	137519466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	104	195	0	ENST00000367739.4:c.1172G>A	p.Ser391Asn	p.S391N	ENST00000367739	NM_000416.2	391	aGc/aAc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851285	156851285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	49	419	2	ENST00000524377.1:c.2242C>T	p.Arg748Trp	p.R748W	ENST00000524377	NM_002529.3	748	Cgg/Tgg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877330	40877330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	101	252	0	ENST00000373198.4:c.2366G>A	p.Arg789Lys	p.R789K	ENST00000373198	NM_133170.3	789	aGg/aAg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120509018	120509018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	50	445	1	ENST00000256646.2:c.1548C>A	p.Phe516Leu	p.F516L	ENST00000256646	NM_024408.3	516	ttC/ttA																																																																														
SMAD3	0	MSKCC	GRCh37	15	67479828	67479828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	216	361	0	ENST00000327367.4:c.1135G>A	p.Gly379Ser	p.G379S	ENST00000327367	NM_005902.3	379	Ggc/Agc																																																																														
BLM	0	MSKCC	GRCh37	15	91298016	91298049	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTTAACATTTTTTTTATTTGCAGTACGTTAAA	GGCTTAACATTTTTTTTATTTGCAGTACGTTAAA	-			P-0018439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	38	182	0	ENST00000355112.3:c.960-23_970del		p.X320_splice	ENST00000355112	NM_000057.2	320																																																																															
EZH1	0	MSKCC	GRCh37	17	40869996	40869996	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	173	371	1	ENST00000428826.2:c.1021C>A	p.Leu341Met	p.L341M	ENST00000428826		341	Ctg/Atg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63526171	63526171	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	59	520	0	ENST00000307078.5:c.2455G>T	p.Glu819Ter	p.E819*	ENST00000307078	NM_004655.3	819	Gag/Tag																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273627	18273816	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGGTGGAGGTTGCAGTGAGCCGAAATCGCACCACTGCACTGCAGCCTGGACAACAGAGCAGCAAGACTCTGTCTCAAAAAAAAAGGGGACAGGGATTGAGGGTCAGGTGCGGGGTCCCACTGGGTGCCGACACCCCTCTCCTCCCCCAGGAAAGGCGGGAACAATAAGCTGATCAAGGTCTTCCACCGA	GAGGTGGAGGTTGCAGTGAGCCGAAATCGCACCACTGCACTGCAGCCTGGACAACAGAGCAGCAAGACTCTGTCTCAAAAAAAAAGGGGACAGGGATTGAGGGTCAGGTGCGGGGTCCCACTGGGTGCCGACACCCCTCTCCTCCCCCAGGAAAGGCGGGAACAATAAGCTGATCAAGGTCTTCCACCGA	-			P-0018439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	24	26	0	ENST00000222254.8:c.1110-148_1151del		p.X370_splice	ENST00000222254	NM_005027.3	370																																																																															
TET2	0	MSKCC	GRCh37	4	106156004	106156004	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	234	319	0	ENST00000380013.4:c.905A>G	p.Asp302Gly	p.D302G	ENST00000380013	NM_001127208.2	302	gAt/gGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151853298	151853298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	82	278	0	ENST00000262189.6:c.11804G>T	p.Ser3935Ile	p.S3935I	ENST00000262189	NM_170606.2	3935	aGc/aTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	44	285	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	82	296	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	116	496	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636794	8636794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	100	421	1	ENST00000356435.5:c.115G>A	p.Gly39Arg	p.G39R	ENST00000356435		39	Gga/Aga																																																																														
ARID2	0	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	80	303	1	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
PPP6C	0	MSKCC	GRCh37	9	127920559	127920559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	123	523	0	ENST00000373547.4:c.340C>T	p.His114Tyr	p.H114Y	ENST00000373547	NM_002721.4	114	Cat/Tat																																																																														
JAK1	0	MSKCC	GRCh37	1	65307158	65307158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	71	298	0	ENST00000342505.4:c.2530G>A	p.Asp844Asn	p.D844N	ENST00000342505	NM_002227.2	844	Gac/Aac																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281926	49281926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	108	479	0	ENST00000282018.3:c.973C>T	p.Pro325Ser	p.P325S	ENST00000282018	NM_020377.2	325	Cca/Tca																																																																														
NTRK3	0	MSKCC	GRCh37	15	88799233	88799233	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141393833		P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	221	515	0	ENST00000360948.2:c.152G>A	p.Gly51Glu	p.G51E	ENST00000360948	NM_001012338.2	51	gGg/gAg																																																																														
SLX4	0	MSKCC	GRCh37	16	3639204	3639204	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	95	527	0	ENST00000294008.3:c.4435C>T	p.Arg1479Ter	p.R1479*	ENST00000294008	NM_032444.2	1479	Cga/Tga																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346117	89346117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	17	104	0	ENST00000301030.4:c.6833C>T	p.Thr2278Ile	p.T2278I	ENST00000301030	NM_001256183.1	2278	aCt/aTt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245271	41245271	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	106	583	0	ENST00000357654.3:c.2277A>C	p.Gln759His	p.Q759H	ENST00000357654	NM_007294.3	759	caA/caC																																																																														
CIC	0	MSKCC	GRCh37	19	42794872	42794872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	87	399	1	ENST00000575354.2:c.1952C>T	p.Pro651Leu	p.P651L	ENST00000575354	NM_015125.3	651	cCc/cTc																																																																														
ALK	0	MSKCC	GRCh37	2	29498082	29498082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	95	426	0	ENST00000389048.3:c.1924G>A	p.Asp642Asn	p.D642N	ENST00000389048	NM_004304.4	642	Gac/Aac																																																																														
EPAS1	0	MSKCC	GRCh37	2	46583308	46583308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	81	371	0	ENST00000263734.3:c.236C>T	p.Ser79Phe	p.S79F	ENST00000263734	NM_001430.4	79	tCc/tTc																																																																														
MSH6	0	MSKCC	GRCh37	2	48033968	48033968	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	97	346	2	ENST00000234420.5:c.4052A>T	p.His1351Leu	p.H1351L	ENST00000234420	NM_000179.2	1351	cAt/cTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9523313	9523313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	129	452	2	ENST00000353224.5:c.1924C>T	p.Pro642Ser	p.P642S	ENST00000353224	NM_177990.2	642	Ccc/Tcc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713329	40713329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	114	487	0	ENST00000373198.4:c.4186C>T	p.His1396Tyr	p.H1396Y	ENST00000373198	NM_133170.3	1396	Cac/Tac																																																																														
MDC1	0	MSKCC	GRCh37	6	30680659	30680659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	98	376	0	ENST00000376406.3:c.1060C>T	p.His354Tyr	p.H354Y	ENST00000376406	NM_014641.2	354	Cat/Tat																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741653	145741653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	123	476	0	ENST00000428558.2:c.850C>T	p.Pro284Ser	p.P284S	ENST00000428558	NM_004260.3	284	Ccc/Tcc																																																																														
ATRX	0	MSKCC	GRCh37	X	76939730	76939730	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	126	519	0	ENST00000373344.5:c.1018A>G	p.Thr340Ala	p.T340A	ENST00000373344	NM_000489.3	340	Acc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0018446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	160	386	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30099969	30099969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	59	322	0	ENST00000331968.5:c.1651G>A	p.Gly551Ser	p.G551S	ENST00000331968	NM_002742.2	551	Ggt/Agt																																																																														
SLX4	0	MSKCC	GRCh37	16	3632648	3632648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	165	490	0	ENST00000294008.3:c.5200G>A	p.Glu1734Lys	p.E1734K	ENST00000294008	NM_032444.2	1734	Gag/Aag																																																																														
EP300	0	MSKCC	GRCh37	22	41573157	41573161	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGC	GCAGC	-			P-0018446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	70	374	1	ENST00000263253.7:c.5442_5446del	p.Gln1815ThrfsTer66	p.Q1815Tfs*66	ENST00000263253	NM_001429.3	1814	cgGCAGCaa/cgaa																																																																														
EGFR	0	MSKCC	GRCh37	7	55211008	55211008	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	194	306	1	ENST00000275493.2:c.251A>T	p.Glu84Val	p.E84V	ENST00000275493	NM_005228.3	84	gAg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579559	7579559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	122	523	0	ENST00000269305.4:c.128delT	p.Leu43Ter	p.L43*	ENST00000269305	NM_001126112.2	43	tTg/tg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9776636	9776643	+	frameshift_variant	Frame_Shift_Del	DEL	CATGAGTA	CATGAGTA	-			P-0018447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	41	517	0	ENST00000377346.4:c.740_747delATGAGTAC	p.His247ProfsTer39	p.H247Pfs*39	ENST00000377346	NM_005026.3	247	CATGAGTAc/c																																																																														
ATR	0	MSKCC	GRCh37	3	142281226	142281226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	93	472	1	ENST00000350721.4:c.1018G>A	p.Asp340Asn	p.D340N	ENST00000350721	NM_001184.3	340	Gat/Aat																																																																														
LATS1	0	MSKCC	GRCh37	6	149983031	149983031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	86	561	0	ENST00000253339.5:c.3227A>G	p.Tyr1076Cys	p.Y1076C	ENST00000253339		1076	tAt/tGt																																																																														
ALK	0	MSKCC	GRCh37	2	30142985	30143000	+	protein_altering_variant	In_Frame_Del	DEL	CTTGGCGAATCCACCA	CTTGGCGAATCCACCA	G			P-0018447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	58	756	0	ENST00000389048.3:c.526_541delTGGTGGATTCGCCAAGinsC	p.Trp176_Gly181delinsArg	p.W176_G181delinsR	ENST00000389048	NM_004304.4	176	TGGTGGATTCGCCAAGgc/Cgc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274772	123274772	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	253	586	1	ENST00000358487.5:c.1146C>A	p.Cys382Ter	p.C382*	ENST00000358487	NM_000141.4	382	tgC/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	860	677	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
POLE	0	MSKCC	GRCh37	12	133245229	133245229	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	579	627	1	ENST00000320574.5:c.2018G>T	p.Gly673Val	p.G673V	ENST00000320574	NM_006231.2	673	gGc/gTc																																																																														
MGA	0	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	254	512	2	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	333	744	1	ENST00000269305.4:c.379T>A	p.Ser127Thr	p.S127T	ENST00000269305	NM_001126112.2	127	Tcc/Acc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604773	48604773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	453	476	0	ENST00000342988.3:c.1595C>A	p.Ala532Asp	p.A532D	ENST00000342988	NM_005359.5	532	gCc/gAc																																																																														
CASP8	0	MSKCC	GRCh37	2	202131415	202131415	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	360	562	0	ENST00000358485.4:c.383T>G	p.Ile128Ser	p.I128S	ENST00000358485	NM_001080125.1	128	aTt/aGt																																																																														
BARD1	0	MSKCC	GRCh37	2	215646177	215646177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	251	540	0	ENST00000260947.4:c.421A>G	p.Asn141Asp	p.N141D	ENST00000260947	NM_000465.2	141	Aat/Gat																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264292	46264292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	160	392	0	ENST00000371998.3:c.1339G>A	p.Gly447Ser	p.G447S	ENST00000371998		447	Ggc/Agc																																																																														
BAP1	0	MSKCC	GRCh37	3	52436674	52436674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	221	595	0	ENST00000460680.1:c.2000G>C	p.Arg667Thr	p.R667T	ENST00000460680	NM_004656.3	667	aGg/aCg																																																																														
BAP1	0	MSKCC	GRCh37	3	52437647	52437647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	239	489	0	ENST00000460680.1:c.1514C>T	p.Ser505Leu	p.S505L	ENST00000460680	NM_004656.3	505	tCg/tTg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873105	134873105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	232	551	0	ENST00000398015.3:c.1409G>A	p.Arg470Gln	p.R470Q	ENST00000398015	NM_004441.4	470	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112176008	112176008	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	183	452	0	ENST00000257430.4:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000257430	NM_000038.5	1573	Gaa/Taa																																																																														
RAD50	0	MSKCC	GRCh37	5	131923614	131923614	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	156	386	0	ENST00000265335.6:c.886-2A>T		p.X296_splice	ENST00000265335		296																																																																															
KDM5C	0	MSKCC	GRCh37	X	53225129	53225129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	199	591	5	ENST00000375401.3:c.3089G>A	p.Arg1030Gln	p.R1030Q	ENST00000375401	NM_004187.3	1030	cGg/cAg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412209	63412210	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0018448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	934	810	0	ENST00000330258.3:c.956_957dupTG	p.Lys320Ter	p.K320*	ENST00000330258	NM_152424.3	319	-/TG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	579	641	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0018451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	461	455	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	528	523	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
WT1	0	MSKCC	GRCh37	11	32456725	32456725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	247	518	0	ENST00000332351.3:c.167G>A	p.Arg56Gln	p.R56Q	ENST00000332351	NM_024426.4	56	cGg/cAg																																																																														
RB1	0	MSKCC	GRCh37	13	48919281	48919281	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	333	352	0	ENST00000267163.4:c.446delC	p.Ser149Ter	p.S149*	ENST00000267163	NM_000321.2	149	tCa/ta																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449562	149449562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	593	611	0	ENST00000286301.3:c.1384C>A	p.Pro462Thr	p.P462T	ENST00000286301	NM_005211.3	462	Ccc/Acc																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553485	106553485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	120	310	0	ENST00000369096.4:c.1450C>T	p.Pro484Ser	p.P484S	ENST00000369096	NM_001198.3	484	Ccc/Tcc																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200329	138200329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	215	406	2	ENST00000237289.4:c.1747G>C	p.Gly583Arg	p.G583R	ENST00000237289	NM_001270507.1	583	Gga/Cga																																																																														
GLI1	0	MSKCC	GRCh37	12	57861870	57861870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	158	577	0	ENST00000228682.2:c.1171G>C	p.Ala391Pro	p.A391P	ENST00000228682	NM_005269.2	391	Gcc/Ccc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514905	103514905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	65	370	0	ENST00000355739.4:c.1406A>G	p.Asp469Gly	p.D469G	ENST00000355739	NM_000123.3	469	gAc/gGc																																																																														
NTHL1	0	MSKCC	GRCh37	16	2089939	2089939	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	73	402	0	ENST00000219066.1:c.925G>T	p.Ala309Ser	p.A309S	ENST00000219066	NM_002528.5	309	Gcc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577539	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	236	582	0	ENST00000269305.4:c.742_743delCGinsTT	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	CGg/TTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10248598	10248598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	88	579	1	ENST00000340748.4:c.4155G>T	p.Glu1385Asp	p.E1385D	ENST00000340748		1385	gaG/gaT																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18266934	18266934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	62	464	1	ENST00000222254.8:c.245C>T	p.Ala82Val	p.A82V	ENST00000222254	NM_005027.3	82	gCc/gTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40747127	40747127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	267	494	1	ENST00000373198.4:c.2955G>T	p.Glu985Asp	p.E985D	ENST00000373198	NM_133170.3	985	gaG/gaT																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670648	134670648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	367	624	0	ENST00000398015.3:c.559C>G	p.Leu187Val	p.L187V	ENST00000398015	NM_004441.4	187	Ctt/Gtt																																																																														
PRKCI	0	MSKCC	GRCh37	3	169981211	169981211	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	79	566	0	ENST00000295797.4:c.358G>C	p.Glu120Gln	p.E120Q	ENST00000295797	NM_002740.5	120	Gaa/Caa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	309	425	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250464	26250464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	62	517	0	ENST00000446824.2:c.370G>A	p.Asp124Asn	p.D124N	ENST00000446824	NM_021018.2	124	Gac/Aac																																																																														
ROS1	0	MSKCC	GRCh37	6	117687241	117687241	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	48	308	0	ENST00000368508.3:c.2810C>T	p.Pro937Leu	p.P937L	ENST00000368508	NM_002944.2	937	cCa/cTa																																																																														
EGFR	0	MSKCC	GRCh37	7	55227991	55227991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	419	504	0	ENST00000275493.2:c.1458G>C	p.Gln486His	p.Q486H	ENST00000275493	NM_005228.3	486	caG/caC																																																																														
KMT2C	0	MSKCC	GRCh37	7	151896363	151896363	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	152	362	0	ENST00000262189.6:c.4273+1G>T		p.X1425_splice	ENST00000262189	NM_170606.2	1425																																																																															
MED12	0	MSKCC	GRCh37	X	70343538	70343538	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	61	660	2	ENST00000374080.3:c.1712T>A	p.Leu571Gln	p.L571Q	ENST00000374080		571	cTg/cAg																																																																														
STAG2	0	MSKCC	GRCh37	X	123191804	123191804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	46	446	0	ENST00000218089.9:c.1393G>T	p.Val465Phe	p.V465F	ENST00000218089	NM_001042749.1	465	Gtt/Ttt																																																																														
DDR2	0	MSKCC	GRCh37	1	162735807	162735807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	132	731	0	ENST00000367921.3:c.1116C>G	p.Asn372Lys	p.N372K	ENST00000367921	NM_006182.2	372	aaC/aaG																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138627	11138627	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	86	499	0	ENST00000344626.4:c.3382+1G>A		p.X1128_splice	ENST00000344626	NM_003072.3	1128																																																																															
PDGFRB	0	MSKCC	GRCh37	5	149497323	149497323	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	216	578	0	ENST00000261799.4:c.2995C>T	p.Arg999Ter	p.R999*	ENST00000261799	NM_002609.3	999	Cga/Tga																																																																														
EGFR	0	MSKCC	GRCh37	7	55242468	55242486	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAAGCAACATCT	ATTAAGAGAAGCAACATCT	GCAA			P-0018453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	268	703	2	ENST00000275493.2:c.2238_2256delATTAAGAGAAGCAACATCTinsGCAA	p.Leu747_Ser752delinsGln	p.L747_S752delinsQ	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACATCT/gaGCAA																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	207	619	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	147	554	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	167	576	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9786966	9786966	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0018454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	86	423	0	ENST00000377346.4:c.2998-1G>T		p.X1000_splice	ENST00000377346	NM_005026.3	1000																																																																															
REL	0	MSKCC	GRCh37	2	61145424	61145424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	75	314	0	ENST00000295025.8:c.634C>T	p.Gln212Ter	p.Q212*	ENST00000295025	NM_002908.2	212	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	384	630	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	220	553	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
RBM10	0	MSKCC	GRCh37	X	47039372	47039372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	372	660	0	ENST00000329236.7:c.764G>A	p.Arg255His	p.R255H	ENST00000329236	NM_001204466.1	255	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	223	661	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																														
STK11	0	MSKCC	GRCh37	19	1222986	1222986	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	181	498	0	ENST00000326873.7:c.923G>T	p.Trp308Leu	p.W308L	ENST00000326873	NM_000455.4	308	tGg/tTg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748739	43748739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	241	725	0	ENST00000382044.4:c.2067G>A	p.Met689Ile	p.M689I	ENST00000382044	NM_001141980.1	689	atG/atA																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748795	43748795	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	217	750	0	ENST00000382044.4:c.2011G>T	p.Glu671Ter	p.E671*	ENST00000382044	NM_001141980.1	671	Gaa/Taa																																																																														
RPTOR	0	MSKCC	GRCh37	17	78796945	78796945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	207	512	0	ENST00000306801.3:c.1058C>A	p.Ala353Glu	p.A353E	ENST00000306801	NM_020761.2	353	gCg/gAg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42866394	42866394	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	191	599	1	ENST00000398585.3:c.238C>G	p.Gln80Glu	p.Q80E	ENST00000398585	NM_001135099.1	80	Cag/Gag																																																																														
TSC2	0	MSKCC	GRCh37	16	2111996	2111996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	36	386	0	ENST00000219476.3:c.1244C>T	p.Ala415Val	p.A415V	ENST00000219476	NM_000548.3	415	gCg/gTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213590	36213590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	131	614	0	ENST00000222270.7:c.2692C>T	p.Leu898Phe	p.L898F	ENST00000222270	NM_014727.1	898	Ctc/Ttc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0018459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	28	430	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	16	220	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PTEN	0	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	64	396	0	ENST00000371953.3:c.253+1G>A		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	76	413	4	ENST00000371953.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000371953	NM_000314.4	130	cGa/cTa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057947	27057948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	83	647	0	ENST00000324856.7:c.1656dupA	p.Gln553ThrfsTer70	p.Q553Tfs*70	ENST00000324856	NM_006015.4	552	tca/tcAa																																																																														
MED12	0	MSKCC	GRCh37	X	70339328	70339328	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	97	378	1	ENST00000374080.3:c.204+1G>T		p.X68_splice	ENST00000374080		68																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11138473	11138473	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	78	530	0	ENST00000344626.4:c.3229C>T	p.Arg1077Ter	p.R1077*	ENST00000344626	NM_003072.3	1077	Cga/Tga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916913	178916915	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0018459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	60	531	0	ENST00000263967.3:c.301_303delGTA	p.Val101del	p.V101del	ENST00000263967	NM_006218.2	100	aaAGTa/aaa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468052	50468052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	45	356	0	ENST00000331340.3:c.1287G>C	p.Lys429Asn	p.K429N	ENST00000331340	NM_006060.4	429	aaG/aaC																																																																														
AR	0	MSKCC	GRCh37	X	66765325	66765325	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	72	612	1	ENST00000374690.3:c.337G>T	p.Glu113Ter	p.E113*	ENST00000374690	NM_000044.3	113	Gaa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0018460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	42	554	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
SLX4	0	MSKCC	GRCh37	16	3640924	3640924	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	170	735	0	ENST00000294008.3:c.2715G>C	p.Glu905Asp	p.E905D	ENST00000294008	NM_032444.2	905	gaG/gaC																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18271877	18271877	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	80	575	0	ENST00000222254.8:c.480C>G	p.Ser160Arg	p.S160R	ENST00000222254	NM_005027.3	160	agC/agG																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15289895	15289895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	156	756	0	ENST00000263388.2:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000263388	NM_000435.2	1220	cGg/cAg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	136	480	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
ATR	0	MSKCC	GRCh37	3	142188397	142188397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	24	432	2	ENST00000350721.4:c.6334C>T	p.Arg2112Cys	p.R2112C	ENST00000350721	NM_001184.3	2112	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	289	647	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
AXIN1	0	MSKCC	GRCh37	16	354314	354314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	124	534	1	ENST00000262320.3:c.1244G>A	p.Arg415His	p.R415H	ENST00000262320	NM_003502.3	415	cGc/cAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858738	9858738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149698593		P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	118	244	0	ENST00000330684.3:c.2663C>T	p.Thr888Met	p.T888M	ENST00000330684	NM_001134407.1	888	aCg/aTg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023957	31023957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139435094		P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	133	638	1	ENST00000375687.4:c.3442C>T	p.Arg1148Cys	p.R1148C	ENST00000375687	NM_015338.5	1148	Cgc/Tgc																																																																														
ACVR1	0	MSKCC	GRCh37	2	158626924	158626924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	289	609	1	ENST00000263640.3:c.746C>T	p.Thr249Met	p.T249M	ENST00000263640	NM_001105.4	249	aCg/aTg																																																																														
NRAS	0	MSKCC	GRCh37	1	115252203	115252203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	158	360	0	ENST00000369535.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000369535	NM_002524.4	146	gCc/gTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391716	139391716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	293	563	0	ENST00000277541.6:c.6475C>T	p.Arg2159Cys	p.R2159C	ENST00000277541	NM_017617.3	2159	Cgc/Tgc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980581	1980581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	271	567	0	ENST00000382891.5:c.4043C>T	p.Pro1348Leu	p.P1348L	ENST00000382891	NM_133335.3	1348	cCg/cTg																																																																														
CDC42	0	MSKCC	GRCh37	1	22412956	22412956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	34	177	1	ENST00000344548.3:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000344548	NM_001039802.1	68	cGa/cAa																																																																														
SUFU	0	MSKCC	GRCh37	10	104269023	104269023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	341	581	2	ENST00000369902.3:c.280G>A	p.Gly94Ser	p.G94S	ENST00000369902	NM_016169.3	94	Ggc/Agc																																																																														
IRS2	0	MSKCC	GRCh37	13	110436467	110436467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	445	940	2	ENST00000375856.3:c.1934G>A	p.Ser645Asn	p.S645N	ENST00000375856	NM_003749.2	645	aGc/aAc																																																																														
MAX	0	MSKCC	GRCh37	14	65543265	65543265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	20	308	0	ENST00000358664.4:c.412T>G	p.Ser138Ala	p.S138A	ENST00000358664	NM_002382.4	138	Tcg/Gcg																																																																														
DICER1	0	MSKCC	GRCh37	14	95557618	95557618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	76	696	0	ENST00000343455.3:c.5449G>A	p.Gly1817Ser	p.G1817S	ENST00000343455	NM_177438.2	1817	Ggt/Agt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350438	89350438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	466	805	2	ENST00000301030.4:c.2512C>T	p.Arg838Ter	p.R838*	ENST00000301030	NM_001256183.1	838	Cga/Tga																																																																														
ERCC3	0	MSKCC	GRCh37	2	128015267	128015267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	231	497	0	ENST00000285398.2:c.2254G>A	p.Gly752Arg	p.G752R	ENST00000285398	NM_000122.1	752	Ggg/Agg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62294212	62294212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	385	729	1	ENST00000508582.2:c.580C>T	p.Arg194Cys	p.R194C	ENST00000508582		194	Cgc/Tgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187518921	187518921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	157	605	1	ENST00000441802.2:c.12283G>T	p.Asp4095Tyr	p.D4095Y	ENST00000441802	NM_005245.3	4095	Gat/Tat																																																																														
NSD1	0	MSKCC	GRCh37	5	176562721	176562721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	353	676	0	ENST00000439151.2:c.617C>T	p.Ala206Val	p.A206V	ENST00000439151	NM_022455.4	206	gCc/gTc																																																																														
MTOR	0	MSKCC	GRCh37	1	11174441	11174441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	97	698	1	ENST00000361445.4:c.7234G>A	p.Asp2412Asn	p.D2412N	ENST00000361445	NM_004958.3	2412	Gac/Aac																																																																														
PTEN	0	MSKCC	GRCh37	10	89692836	89692836	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	87	206	0	ENST00000371953.3:c.320A>T	p.Asp107Val	p.D107V	ENST00000371953	NM_000314.4	107	gAt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	496	670	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444938	49444938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	82	464	1	ENST00000301067.7:c.2528C>T	p.Ser843Phe	p.S843F	ENST00000301067	NM_003482.3	843	tCc/tTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445318	49445318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	91	788	0	ENST00000301067.7:c.2148G>T	p.Met716Ile	p.M716I	ENST00000301067	NM_003482.3	716	atG/atT																																																																														
INSR	0	MSKCC	GRCh37	19	7122934	7122934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	76	692	3	ENST00000302850.5:c.3325G>A	p.Gly1109Arg	p.G1109R	ENST00000302850	NM_000208.2	1109	Gga/Aga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213784	66213784	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	61	667	0	ENST00000273854.3:c.2646G>C	p.Met882Ile	p.M882I	ENST00000273854	NM_004439.5	882	atG/atC																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467388	66467388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	20	256	0	ENST00000273854.3:c.881G>T	p.Gly294Val	p.G294V	ENST00000273854	NM_004439.5	294	gGa/gTa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509282	106509282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	108	529	0	ENST00000359195.3:c.1276G>T	p.Gly426Trp	p.G426W	ENST00000359195	NM_002649.2	426	Ggg/Tgg																																																																														
EGFL7	0	MSKCC	GRCh37	9	139563068	139563068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	65	728	0	ENST00000308874.7:c.140G>T	p.Arg47Leu	p.R47L	ENST00000308874		47	cGt/cTt																																																																														
RBM10	0	MSKCC	GRCh37	X	47041648	47041648	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	83	338	0	ENST00000329236.7:c.1639G>T	p.Gly547Ter	p.G547*	ENST00000329236	NM_001204466.1	547	Gga/Tga																																																																														
ATRX	0	MSKCC	GRCh37	X	76829818	76829818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	146	332	0	ENST00000373344.5:c.6223G>T	p.Gly2075Trp	p.G2075W	ENST00000373344	NM_000489.3	2075	Ggg/Tgg																																																																														
PGR	0	MSKCC	GRCh37	11	100962588	100962588	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	101	443	0	ENST00000325455.5:c.1809T>A	p.Cys603Ter	p.C603*	ENST00000325455	NM_001202474.3	603	tgT/tgA																																																																														
POLE	0	MSKCC	GRCh37	12	133263856	133263856	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	49	280	0	ENST00000320574.5:c.46G>T	p.Asp16Tyr	p.D16Y	ENST00000320574	NM_006231.2	16	Gat/Tat																																																																														
ERCC5	0	MSKCC	GRCh37	13	103513931	103513931	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	94	539	0	ENST00000355739.4:c.747T>A	p.His249Gln	p.H249Q	ENST00000355739	NM_000123.3	249	caT/caA																																																																														
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	216	510	0	ENST00000269305.4:c.772del	p.Glu258LysfsTer87	p.E258Kfs*87	ENST00000269305	NM_001126112.2	258	Gaa/aa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251845	212251845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	150	353	0	ENST00000342788.4:c.3214G>T	p.Ala1072Ser	p.A1072S	ENST00000342788	NM_005235.2	1072	Gct/Tct																																																																														
ERBB4	0	MSKCC	GRCh37	2	212426735	212426735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	99	503	0	ENST00000342788.4:c.2380C>G	p.Leu794Val	p.L794V	ENST00000342788	NM_005235.2	794	Ctg/Gtg																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149505037	149505037	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	62	409	0	ENST00000261799.4:c.1778G>A	p.Trp593Ter	p.W593*	ENST00000261799	NM_002609.3	593	tGg/tAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	127	326	1				ENST00000310581	NM_198253.2																																																																																
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	231	511	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170021	32170021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	321	593	0	ENST00000375023.3:c.3587G>A	p.Gly1196Glu	p.G1196E	ENST00000375023	NM_004557.3	1196	gGa/gAa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55154995	55154995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	192	451	0	ENST00000257290.5:c.2704G>A	p.Asp902Asn	p.D902N	ENST00000257290	NM_006206.4	902	Gat/Aat																																																																														
ATM	0	MSKCC	GRCh37	11	108155016	108155016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	152	428	0	ENST00000278616.4:c.3809C>T	p.Ser1270Phe	p.S1270F	ENST00000278616	NM_000051.3	1270	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7576647	7576980	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGGTCTGGTCCTTTAAAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACC	CTGGTCTGGTCCTTTAAAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACC	-			P-0018466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	246	426	0	ENST00000269305.4:c.919+39_993+206del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
ERBB4	0	MSKCC	GRCh37	2	212483928	212483928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	172	485	0	ENST00000342788.4:c.2275C>T	p.Pro759Ser	p.P759S	ENST00000342788	NM_005235.2	759	Ccc/Tcc																																																																														
PPARG	0	MSKCC	GRCh37	3	12422845	12422845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	221	441	2	ENST00000287820.6:c.335C>T	p.Ser112Phe	p.S112F	ENST00000287820	NM_015869.4	112	tCt/tTt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55141119	55141119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	130	284	0	ENST00000257290.5:c.1765C>T	p.Pro589Ser	p.P589S	ENST00000257290	NM_006206.4	589	Cca/Tca																																																																														
ARID1B	0	MSKCC	GRCh37	6	157510811	157510811	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	224	455	0	ENST00000346085.5:c.3586C>T	p.Gln1196Ter	p.Q1196*	ENST00000346085	NM_020732.3	1196	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	203	508	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	303	562	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0018468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	225	293	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0018468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	225	293	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691801	30691801	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	233	558	0	ENST00000359013.4:c.378C>A	p.Cys126Ter	p.C126*	ENST00000359013	NM_001024847.2	126	tgC/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	20	554	1	ENST00000269305.4:c.476C>A	p.Ala159Asp	p.A159D	ENST00000269305	NM_001126112.2	159	gCc/gAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1413	135	551	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	442	581	1	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944380	40944380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	107	431	0	ENST00000373198.4:c.2122C>T	p.Leu708Phe	p.L708F	ENST00000373198	NM_133170.3	708	Ctc/Ttc																																																																														
MTOR	0	MSKCC	GRCh37	1	11272386	11272386	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	173	480	0	ENST00000361445.4:c.3544T>C	p.Phe1182Leu	p.F1182L	ENST00000361445	NM_004958.3	1182	Ttt/Ctt																																																																														
CDK12	0	MSKCC	GRCh37	17	37619319	37619319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	126	385	0	ENST00000447079.4:c.995C>T	p.Ser332Phe	p.S332F	ENST00000447079	NM_015083.1	332	tCc/tTc																																																																														
CDK12	0	MSKCC	GRCh37	17	37627724	37627724	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	322	906	0	ENST00000447079.4:c.1639C>T	p.Gln547Ter	p.Q547*	ENST00000447079	NM_015083.1	547	Cag/Tag																																																																														
SRC	0	MSKCC	GRCh37	20	36014523	36014523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	196	579	2	ENST00000358208.4:c.296C>T	p.Thr99Met	p.T99M	ENST00000358208		99	aCg/aTg																																																																														
CSF1R	0	MSKCC	GRCh37	5	149440497	149440497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	145	609	0	ENST00000286301.3:c.1897G>A	p.Glu633Lys	p.E633K	ENST00000286301	NM_005211.3	633	Gag/Aag																																																																														
FLT4	0	MSKCC	GRCh37	5	180048737	180048737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	211	591	0	ENST00000261937.6:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000261937	NM_182925.4	609	Gac/Aac																																																																														
YAP1	0	MSKCC	GRCh37	11	102056845	102056845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	41	614	0	ENST00000282441.5:c.785G>A	p.Arg262Lys	p.R262K	ENST00000282441	NM_001130145.2	262	aGg/aAg																																																																														
ETV6	0	MSKCC	GRCh37	12	12022642	12022642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	125	477	0	ENST00000396373.4:c.748G>A	p.Glu250Lys	p.E250K	ENST00000396373	NM_001987.4	250	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	113	495	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
AKT2	0	MSKCC	GRCh37	19	40741861	40741861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	91	471	2	ENST00000392038.2:c.1111C>T	p.Arg371Cys	p.R371C	ENST00000392038	NM_001626.4	371	Cgc/Tgc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62305351	62305351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	58	626	1	ENST00000508582.2:c.896G>T	p.Gly299Val	p.G299V	ENST00000508582		299	gGa/gTa																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259335	89259335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750779844		P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	78	438	0	ENST00000336596.2:c.479G>A	p.Arg160His	p.R160H	ENST00000336596	NM_005233.5	160	cGt/cAt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89448472	89448472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	20	343	0	ENST00000336596.2:c.1436A>G	p.Glu479Gly	p.E479G	ENST00000336596	NM_005233.5	479	gAa/gGa																																																																														
APC	0	MSKCC	GRCh37	5	112179229	112179229	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	64	420	2	ENST00000257430.4:c.7938A>T	p.Gln2646His	p.Q2646H	ENST00000257430	NM_000038.5	2646	caA/caT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	77	606	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139404404	139404404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	55	554	0	ENST00000277541.6:c.2750A>G	p.His917Arg	p.H917R	ENST00000277541	NM_017617.3	917	cAc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	648	710	3	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
JUN	0	MSKCC	GRCh37	1	59248499	59248499	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	615	408	4	ENST00000371222.2:c.244C>T	p.Gln82Ter	p.Q82*	ENST00000371222	NM_002228.3	82	Cag/Tag																																																																														
MCL1	0	MSKCC	GRCh37	1	150551690	150551690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	141	267	4	ENST00000369026.2:c.317C>T	p.Ala106Val	p.A106V	ENST00000369026	NM_021960.4	106	gCg/gTg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981176	201981176	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	376	647	2	ENST00000359651.3:c.255C>A	p.Tyr85Ter	p.Y85*	ENST00000359651		85	taC/taA																																																																														
ELF3	0	MSKCC	GRCh37	1	201982334	201982343	+	frameshift_variant	Frame_Shift_Del	DEL	GGGATCCCAA	GGGATCCCAA	ACT			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	518	691	5	ENST00000359651.3:c.713_722delinsACT	p.Gly238AspfsTer14	p.G238Dfs*14	ENST00000359651		238	gGGGATCCCAAg/gACTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858492	9858492	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148669437		P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	161	401	0	ENST00000330684.3:c.2909G>A	p.Arg970Gln	p.R970Q	ENST00000330684	NM_001134407.1	970	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112173848	112173848	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	171	345	3	ENST00000257430.4:c.2557G>T	p.Glu853Ter	p.E853*	ENST00000257430	NM_000038.5	853	Gag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112175178	112175179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	106	225	0	ENST00000257430.4:c.3888dup	p.Asp1297ArgfsTer4	p.D1297Rfs*4	ENST00000257430	NM_000038.5	1296	gca/gcAa																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553770	106553770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	54	424	1	ENST00000369096.4:c.1735G>A	p.Val579Ile	p.V579I	ENST00000369096	NM_001198.3	579	Gtt/Att																																																																														
PTEN	0	MSKCC	GRCh37	10	89711927	89711928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	62	464	1	ENST00000371953.3:c.548dup	p.Asn184GlufsTer6	p.N184Efs*6	ENST00000371953	NM_000314.4	182	tta/ttAa																																																																														
ARID2	0	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	80	391	1	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
ARID2	0	MSKCC	GRCh37	12	46205238	46205238	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	107	446	0	ENST00000334344.6:c.322G>T	p.Glu108Ter	p.E108*	ENST00000334344	NM_152641.2	108	Gag/Tag																																																																														
RBM10	0	MSKCC	GRCh37	X	47045430	47045607	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCCCAACATTCACATACACATACAAACTTTCAGCAAATGAAGTACCGGGACCGTGCAGCTGAACGCAGAGAAAAGTATGGCATCCCCGAGCCGCCAGAGCCCAAGAGGAGGAAGTACGGCGGCATATCCACAGCCTCTGTGTGAGTGGCTGGGCCAGGTGAGGGGGTCTGGAGCCCG	TCCCCAACATTCACATACACATACAAACTTTCAGCAAATGAAGTACCGGGACCGTGCAGCTGAACGCAGAGAAAAGTATGGCATCCCCGAGCCGCCAGAGCCCAAGAGGAGGAAGTACGGCGGCATATCCACAGCCTCTGTGTGAGTGGCTGGGCCAGGTGAGGGGGTCTGGAGCCCG	-			P-0018487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	43	323	0	ENST00000329236.7:c.2197-34_2303+37del		p.X733_splice	ENST00000329236	NM_001204466.1	733																																																																															
AR	0	MSKCC	GRCh37	X	66931504	66931504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	70	312	0	ENST00000374690.3:c.2146G>A	p.Val716Met	p.V716M	ENST00000374690	NM_000044.3	716	Gtg/Atg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36933217	36933217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	111	639	1	ENST00000361632.4:c.1900G>A	p.Gly634Ser	p.G634S	ENST00000361632		634	Ggc/Agc																																																																														
JUN	0	MSKCC	GRCh37	1	59248619	59248619	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	95	749	0	ENST00000371222.2:c.124C>G	p.Leu42Val	p.L42V	ENST00000371222	NM_002228.3	42	Ctg/Gtg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64136237	64136237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	194	790	0	ENST00000334205.4:c.1396G>A	p.Val466Met	p.V466M	ENST00000334205	NM_003942.2	466	Gtg/Atg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2229783	2229783	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0018489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	99	693	0	ENST00000398665.3:c.4607-1G>A		p.X1536_splice	ENST00000398665	NM_032482.2	1536																																																																															
PDGFRB	0	MSKCC	GRCh37	5	149500852	149500852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	154	624	0	ENST00000261799.4:c.2378A>G	p.Asn793Ser	p.N793S	ENST00000261799	NM_002609.3	793	aAc/aGc																																																																														
MED12	0	MSKCC	GRCh37	X	70352259	70352259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	83	313	0	ENST00000374080.3:c.4286C>A	p.Ala1429Asp	p.A1429D	ENST00000374080		1429	gCc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	263	599	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	31	579	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	85	339	0				ENST00000310581	NM_198253.2																																																																																
TET2	0	MSKCC	GRCh37	4	106158296	106158296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	74	375	0	ENST00000380013.4:c.3197C>G	p.Thr1066Ser	p.T1066S	ENST00000380013	NM_001127208.2	1066	aCt/aGt																																																																														
CARD11	0	MSKCC	GRCh37	7	2963985	2963985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	122	434	0	ENST00000396946.4:c.1822C>T	p.Arg608Cys	p.R608C	ENST00000396946	NM_032415.4	608	Cgc/Tgc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	373	601	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591891	48591891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936394		P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	153	368	0	ENST00000342988.3:c.1054G>A	p.Gly352Arg	p.G352R	ENST00000342988	NM_005359.5	352	Gga/Aga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714462	40714462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	252	427	0	ENST00000373198.4:c.3935C>T	p.Ser1312Phe	p.S1312F	ENST00000373198	NM_133170.3	1312	tCc/tTc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	264	582	0	ENST00000267101.3:c.850G>C	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Cga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56486841	56486842	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	430	482	1	ENST00000267101.3:c.1255_1256delinsAT	p.Gly419Ile	p.G419I	ENST00000267101	NM_001982.3	419	GGa/ATa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88799380	88799380	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	79	407	0	ENST00000360948.2:c.5A>T	p.Asp2Val	p.D2V	ENST00000360948	NM_001012338.2	2	gAt/gTt																																																																														
AXIN1	0	MSKCC	GRCh37	16	364542	364542	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	333	519	0	ENST00000262320.3:c.1019+1G>T		p.X340_splice	ENST00000262320	NM_003502.3	340																																																																															
TP53	0	MSKCC	GRCh37	17	7577098	7577106	+	inframe_deletion	In_Frame_Del	DEL	TCTCCCAGG	TCTCCCAGG	-			P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	423	736	0	ENST00000269305.4:c.832_840del	p.Pro278_Arg280del	p.P278_R280del	ENST00000269305	NM_001126112.2	278	CCTGGGAGA/-																																																																														
SPOP	0	MSKCC	GRCh37	17	47699430	47699430	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	56	290	0	ENST00000347630.2:c.79-1G>T		p.X27_splice	ENST00000347630	NM_001007230.1	27																																																																															
KEAP1	0	MSKCC	GRCh37	19	10602518	10602518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	128	430	1	ENST00000171111.5:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000171111	NM_203500.1	354	Cgg/Tgg																																																																														
ERF	0	MSKCC	GRCh37	19	42753186	42753186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	301	524	1	ENST00000222329.4:c.1078G>T	p.Val360Phe	p.V360F	ENST00000222329	NM_006494.2	360	Gtc/Ttc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024767	31024767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	113	465	0	ENST00000375687.4:c.4252G>A	p.Gly1418Arg	p.G1418R	ENST00000375687	NM_015338.5	1418	Ggg/Agg																																																																														
SETD2	0	MSKCC	GRCh37	3	47059200	47059200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	237	380	1	ENST00000409792.3:c.7461C>A	p.Asn2487Lys	p.N2487K	ENST00000409792	NM_014159.6	2487	aaC/aaA																																																																														
RAD50	0	MSKCC	GRCh37	5	131924471	131924471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	89	424	0	ENST00000265335.6:c.1144G>A	p.Gly382Ser	p.G382S	ENST00000265335		382	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	95	475	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																														
CEBPA	1050	MSKCC	GRCh37	19	33793008	33793010	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	10	78	0	ENST00000498907.2:c.311_313del	p.Gly104del	p.G104del	ENST00000498907	NM_004364.3	104	gGCGac/gac																																																																														
LATS2	0	MSKCC	GRCh37	13	21562298	21562298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	62	519	0	ENST00000382592.4:c.1621G>T	p.Glu541Ter	p.E541*	ENST00000382592	NM_014572.2	541	Gag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11113810	11113810	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	74	459	0	ENST00000344626.4:c.1918G>C	p.Glu640Gln	p.E640Q	ENST00000344626	NM_003072.3	640	Gag/Cag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40899094	40899094	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	41	354	0	ENST00000373198.4:c.2177-1G>T		p.X726_splice	ENST00000373198	NM_133170.3	726																																																																															
WHSC1L1	0	MSKCC	GRCh37	8	38153399	38153399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1358	225	500	0	ENST00000317025.8:c.2830G>C	p.Glu944Gln	p.E944Q	ENST00000317025	NM_023034.1	944	Gaa/Caa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38153464	38153464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	214	411	0	ENST00000317025.8:c.2765G>C	p.Arg922Thr	p.R922T	ENST00000317025	NM_023034.1	922	aGa/aCa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44945109	44945109	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0018495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	14	104	0	ENST00000377967.4:c.3434-1G>A		p.X1145_splice	ENST00000377967	NM_021140.2	1145																																																																															
RARA	0	MSKCC	GRCh37	17	38508318	38508385	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTACGGTATGGCTTTCCCCCGGCCTGCAGGGTGGGATTTGCCCAGGGCCACAGGGCCAGGATGGGCCC	CTACGGTATGGCTTTCCCCCGGCCTGCAGGGTGGGATTTGCCCAGGGCCACAGGGCCAGGATGGGCCC	-			P-0018497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	45	475	0	ENST00000254066.5:c.628_630+65del		p.X210_splice	ENST00000254066	NM_000964.3	210																																																																															
PIK3R2	0	MSKCC	GRCh37	19	18266745	18266745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	26	586	1	ENST00000222254.8:c.56G>A	p.Arg19Gln	p.R19Q	ENST00000222254	NM_005027.3	19	cGg/cAg																																																																														
RHEB	0	MSKCC	GRCh37	7	151188050	151188050	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	29	372	0	ENST00000262187.5:c.103T>C	p.Tyr35His	p.Y35H	ENST00000262187	NM_005614.3	35	Tac/Cac																																																																														
RHEB	0	MSKCC	GRCh37	7	151188048	151188053	+	missense_variant	Missense_Mutation	ONP	GTAGGA	GTAGGA	TTGGGG			P-0018497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	31	357	1	ENST00000262187.5:c.100_105delinsCCCCAA	p.Ser34_Tyr35delinsProGln	p.S34_Y35delinsPQ	ENST00000262187	NM_005614.3	34	TCCTAC/CCCCAA																																																																														
CASP8	0	MSKCC	GRCh37	2	202131228	202131228	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	197	308	0	ENST00000358485.4:c.196C>G	p.Leu66Val	p.L66V	ENST00000358485	NM_001080125.1	66	Ctt/Gtt																																																																														
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	382	365	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
FOXL2	0	MSKCC	GRCh37	3	138665015	138665015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	103	167	0	ENST00000330315.3:c.550G>A	p.Asp184Asn	p.D184N	ENST00000330315	NM_023067.3	184	Gac/Aac																																																																														
SDHB	0	MSKCC	GRCh37	1	17371368	17371369	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0018498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	72	277	0	ENST00000375499.3:c.87_88delinsTA	p.Gln30Lys	p.Q30K	ENST00000375499	NM_003000.2	29	gcCCag/gcTAag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49441807	49441807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	246	478	0	ENST00000301067.7:c.4177C>A	p.His1393Asn	p.H1393N	ENST00000301067	NM_003482.3	1393	Cac/Aac																																																																														
RNF43	0	MSKCC	GRCh37	17	56436095	56436095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	175	317	0	ENST00000407977.2:c.1042C>A	p.His348Asn	p.H348N	ENST00000407977		348	Cat/Aat																																																																														
RAD51C	0	MSKCC	GRCh37	17	56809874	56809874	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	47	427	0	ENST00000337432.4:c.995A>C	p.Gln332Pro	p.Q332P	ENST00000337432	NM_058216.2	332	cAg/cCg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185183633	185183633	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	53	255	0	ENST00000265026.3:c.1489del	p.Glu497ArgfsTer37	p.E497Rfs*37	ENST00000265026	NM_004721.4	496	cGg/cg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143067106	143067106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	148	404	0	ENST00000262992.4:c.1607T>C	p.Ile536Thr	p.I536T	ENST00000262992	NM_001101669.1	536	aTt/aCt																																																																														
TERT	0	MSKCC	GRCh37	5	1253949	1253949	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	T			P-0018498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	132	322	0	ENST00000310581.5:c.3296-3C>A		p.X1099_splice	ENST00000310581	NM_198253.2	1099																																																																															
DROSHA	0	MSKCC	GRCh37	5	31423041	31423041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	154	404	1	ENST00000344624.3:c.3272C>A	p.Pro1091Gln	p.P1091Q	ENST00000344624		1091	cCa/cAa																																																																														
ROS1	0	MSKCC	GRCh37	6	117647546	117647546	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	108	456	0	ENST00000368508.3:c.5398A>C	p.Asn1800His	p.N1800H	ENST00000368508	NM_002944.2	1800	Aat/Cat																																																																														
FOXP1	0	MSKCC	GRCh37	3	71101699	71101699	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	20	168	0	ENST00000318789.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000318789	NM_032682.5	167	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	86	511	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	113	503	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	464	433	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	529	359	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	242	428	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
NEGR1	0	MSKCC	GRCh37	1	72400777	72400777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	57	181	0	ENST00000357731.5:c.394C>A	p.His132Asn	p.H132N	ENST00000357731	NM_173808.2	132	Cat/Aat																																																																														
RB1	0	MSKCC	GRCh37	13	49050852	49050852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	131	282	0	ENST00000267163.4:c.2536C>T	p.Gln846Ter	p.Q846*	ENST00000267163	NM_000321.2	846	Cag/Tag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66535418	66535418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	329	426	0	ENST00000273854.3:c.43C>T	p.Pro15Ser	p.P15S	ENST00000273854	NM_004439.5	15	Cca/Tca																																																																														
FAT1	0	MSKCC	GRCh37	4	187510282	187510282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	296	302	0	ENST00000441802.2:c.13231C>T	p.Pro4411Ser	p.P4411S	ENST00000441802	NM_005245.3	4411	Ccc/Tcc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56170884	56170884	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	74	148	2	ENST00000399503.3:c.1712G>T	p.Cys571Phe	p.C571F	ENST00000399503	NM_005921.1	571	tGc/tTc																																																																														
MET	0	MSKCC	GRCh37	7	116423407	116423407	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	88	223	0	ENST00000397752.3:c.3682G>C	p.Asp1228His	p.D1228H	ENST00000397752	NM_000245.2	1228	Gac/Cac																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974693	21974693	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	489	313	0	ENST00000304494.5:c.134delG	p.Gly45ValfsTer8	p.G45Vfs*8	ENST00000304494	NM_000077.4	45	gGt/gt																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974693	21974693	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	489	313	0	ENST00000304494.5:c.134delG	p.Gly45ValfsTer8	p.G45Vfs*8	ENST00000304494	NM_000077.4	45	gGt/gt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	140	515	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	113	269	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	107	480	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982096	93982096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	73	387	0	ENST00000369303.4:c.1369C>T	p.Arg457Trp	p.R457W	ENST00000369303	NM_004440.3	457	Cgg/Tgg																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88676897	88676897	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	224	530	0	ENST00000372037.3:c.682C>T	p.Arg228Ter	p.R228*	ENST00000372037	NM_004329.2	228	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577506	7577506	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	213	437	0	ENST00000269305.4:c.775del	p.Asp259ThrfsTer86	p.D259Tfs*86	ENST00000269305	NM_001126112.2	259	Gac/ac																																																																														
SETD2	0	MSKCC	GRCh37	3	47098948	47098948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	73	459	2	ENST00000409792.3:c.6326G>T	p.Arg2109Leu	p.R2109L	ENST00000409792	NM_014159.6	2109	cGa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	164	473	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	208	635	1	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa																																																																														
FGF19	0	MSKCC	GRCh37	11	69518614	69518614	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	174	642	0	ENST00000294312.3:c.31T>C	p.Trp11Arg	p.W11R	ENST00000294312	NM_005117.2	11	Tgg/Cgg																																																																														
RECQL	0	MSKCC	GRCh37	12	21636427	21636427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	145	507	0	ENST00000421138.2:c.583G>A	p.Ala195Thr	p.A195T	ENST00000421138		195	Gca/Aca																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11100121	11100121	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	127	386	0	ENST00000344626.4:c.1245+2T>C		p.X415_splice	ENST00000344626	NM_003072.3	415																																																																															
SETD2	0	MSKCC	GRCh37	3	47162770	47162771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTCA			P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	107	330	0	ENST00000409792.3:c.3351_3355dup	p.Ser1119MetfsTer4	p.S1119Mfs*4	ENST00000409792	NM_014159.6	1119	agt/aTGAAAgt																																																																														
FAT1	0	MSKCC	GRCh37	4	187557984	187557987	+	frameshift_variant	Frame_Shift_Del	DEL	GTTT	GTTT	-			P-0018517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	32	210	0	ENST00000441802.2:c.3724_3727del	p.Lys1242LeufsTer33	p.K1242Lfs*33	ENST00000441802	NM_005245.3	1242	AAACct/ct																																																																														
TSC2	0	MSKCC	GRCh37	16	2129039	2129039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	67	383	0	ENST00000219476.3:c.2973A>G	p.Ile991Met	p.I991M	ENST00000219476	NM_000548.3	991	atA/atG																																																																														
CDK12	0	MSKCC	GRCh37	17	37619281	37619281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	112	329	0	ENST00000447079.4:c.957C>G	p.Tyr319Ter	p.Y319*	ENST00000447079	NM_015083.1	319	taC/taG																																																																														
CDK12	0	MSKCC	GRCh37	17	37667781	37667781	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0018518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	86	393	1	ENST00000447079.4:c.2667-1G>T		p.X889_splice	ENST00000447079	NM_015083.1	889																																																																															
JAK2	0	MSKCC	GRCh37	9	5050781	5050781	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	98	589	0	ENST00000381652.3:c.564A>C	p.Arg188Ser	p.R188S	ENST00000381652	NM_004972.3	188	agA/agC																																																																														
CD274	0	MSKCC	GRCh37	9	5457414	5457414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	34	103	0	ENST00000381577.3:c.388G>A	p.Val130Ile	p.V130I	ENST00000381577	NM_014143.3	130	Gtc/Atc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267383	198267383	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	294	391	0	ENST00000335508.6:c.1974G>C	p.Trp658Cys	p.W658C	ENST00000335508	NM_012433.2	658	tgG/tgC																																																																														
IRS1	0	MSKCC	GRCh37	2	227659981	227659982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	236	450	0	ENST00000305123.5:c.3473dup	p.Ala1159SerfsTer20	p.A1159Sfs*20	ENST00000305123	NM_005544.2	1158	gga/ggGa																																																																														
FAT1	0	MSKCC	GRCh37	4	187535426	187535426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	265	348	0	ENST00000441802.2:c.9148G>A	p.Ala3050Thr	p.A3050T	ENST00000441802	NM_005245.3	3050	Gca/Aca																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	89	332	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0018521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	15	387	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																														
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0018521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	111	236	0	ENST00000412916.2:c.165+1G>C		p.X55_splice	ENST00000412916		55																																																																															
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0018521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	207	393	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0018522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	16	223	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
CDH1	0	MSKCC	GRCh37	16	68772228	68772262	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCCTGCCACCCTGGCTTTGACGCCGAGAGCTAC	AGCCCTGCCACCCTGGCTTTGACGCCGAGAGCTAC	-			P-0018522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	217	610	0	ENST00000261769.5:c.78_112del	p.Glu26AspfsTer21	p.E26Dfs*21	ENST00000261769	NM_004360.3	26	gAGCCCTGCCACCCTGGCTTTGACGCCGAGAGCTAC/g																																																																														
POLD1	0	MSKCC	GRCh37	19	50906321	50906321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	78	435	0	ENST00000440232.2:c.982G>A	p.Glu328Lys	p.E328K	ENST00000440232	NM_002691.3	328	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	332	474	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7579559	7579559	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	152	533	1	ENST00000269305.4:c.128T>A	p.Leu43Ter	p.L43*	ENST00000269305	NM_001126112.2	43	tTg/tAg																																																																														
STK11	0	MSKCC	GRCh37	19	1207201	1207201	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	137	382	0	ENST00000326873.7:c.289A>T	p.Lys97Ter	p.K97*	ENST00000326873	NM_000455.4	97	Aag/Tag																																																																														
CYLD	0	MSKCC	GRCh37	16	50825530	50825530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	58	405	0	ENST00000398568.2:c.2161A>G	p.Lys721Glu	p.K721E	ENST00000398568	NM_001042412.1	721	Aaa/Gaa																																																																														
BRIP1	0	MSKCC	GRCh37	17	59878836	59878836	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	64	222	0	ENST00000259008.2:c.919-1G>T		p.X307_splice	ENST00000259008	NM_032043.2	307																																																																															
KEAP1	0	MSKCC	GRCh37	19	10602293	10602293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	154	478	0	ENST00000171111.5:c.1285G>T	p.Gly429Cys	p.G429C	ENST00000171111	NM_203500.1	429	Ggc/Tgc																																																																														
TERT	0	MSKCC	GRCh37	5	1279425	1279425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	72	470	0	ENST00000310581.5:c.2111C>T	p.Pro704Leu	p.P704L	ENST00000310581	NM_198253.2	704	cCt/cTt																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149509451	149509451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	84	555	0	ENST00000261799.4:c.1448G>T	p.Trp483Leu	p.W483L	ENST00000261799	NM_002609.3	483	tGg/tTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110434862	110434862	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	253	563	0	ENST00000375856.3:c.3539T>A	p.Val1180Asp	p.V1180D	ENST00000375856	NM_003749.2	1180	gTc/gAc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023994	31023994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	52	379	0	ENST00000375687.4:c.3479G>A	p.Gly1160Asp	p.G1160D	ENST00000375687	NM_015338.5	1160	gGc/gAc																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699376	117699376	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	281	485	0	ENST00000369458.3:c.265G>T	p.Glu89Ter	p.E89*	ENST00000369458	NM_024626.3	89	Gag/Tag																																																																														
SHOC2	0	MSKCC	GRCh37	10	112745520	112745520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	126	403	0	ENST00000369452.4:c.838A>G	p.Ile280Val	p.I280V	ENST00000369452	NM_007373.3	280	Ata/Gta																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137713	64137713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	340	612	0	ENST00000334205.4:c.1814G>C	p.Gly605Ala	p.G605A	ENST00000334205	NM_003942.2	605	gGg/gCg																																																																														
ATM	0	MSKCC	GRCh37	11	108202205	108202205	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	139	444	0	ENST00000278616.4:c.7550T>G	p.Leu2517Trp	p.L2517W	ENST00000278616	NM_000051.3	2517	tTg/tGg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420223	49420223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	255	541	1	ENST00000301067.7:c.15526C>T	p.His5176Tyr	p.H5176Y	ENST00000301067	NM_003482.3	5176	Cac/Tac																																																																														
LATS2	0	MSKCC	GRCh37	13	21549482	21549482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	99	355	0	ENST00000382592.4:c.2794C>T	p.Leu932Phe	p.L932F	ENST00000382592	NM_014572.2	932	Ctc/Ttc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678589	88678589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	128	223	0	ENST00000360948.2:c.947G>T	p.Arg316Leu	p.R316L	ENST00000360948	NM_001012338.2	316	cGc/cTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934629	9934629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	149	418	0	ENST00000330684.3:c.1526T>C	p.Val509Ala	p.V509A	ENST00000330684	NM_001134407.1	509	gTt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	345	575	0	ENST00000269305.4:c.796G>C	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Cga																																																																														
RPTOR	0	MSKCC	GRCh37	17	78921093	78921093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	305	504	1	ENST00000306801.3:c.3207G>T	p.Arg1069Ser	p.R1069S	ENST00000306801	NM_020761.2	1069	agG/agT																																																																														
STK11	0	MSKCC	GRCh37	19	1221339	1221339	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	201	382	0	ENST00000326873.7:c.862G>T	p.Gly288Trp	p.G288W	ENST00000326873	NM_000455.4	288	Ggg/Tgg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610316	10610316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	301	682	1	ENST00000171111.5:c.394G>T	p.Val132Phe	p.V132F	ENST00000171111	NM_203500.1	132	Gtc/Ttc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138550	11138550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	59	671	1	ENST00000344626.4:c.3306C>A	p.Phe1102Leu	p.F1102L	ENST00000344626	NM_003072.3	1102	ttC/ttA																																																																														
INHA	0	MSKCC	GRCh37	2	220440066	220440066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	237	684	0	ENST00000243786.2:c.919G>T	p.Val307Phe	p.V307F	ENST00000243786	NM_002191.3	307	Gtc/Ttc																																																																														
CUL3	0	MSKCC	GRCh37	2	225367693	225367693	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	43	325	0	ENST00000264414.4:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000264414	NM_003590.4	492	Cag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730882	40730882	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	569	504	0	ENST00000373198.4:c.3653T>C	p.Leu1218Pro	p.L1218P	ENST00000373198	NM_133170.3	1218	cTg/cCg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499422	89499422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	195	381	0	ENST00000336596.2:c.2592C>A	p.Asp864Glu	p.D864E	ENST00000336596	NM_005233.5	864	gaC/gaA																																																																														
KDR	0	MSKCC	GRCh37	4	55979632	55979632	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	322	388	0	ENST00000263923.4:c.815T>A	p.Leu272His	p.L272H	ENST00000263923	NM_002253.2	272	cTt/cAt																																																																														
TERT	0	MSKCC	GRCh37	5	1253872	1253872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	209	411	1	ENST00000310581.5:c.3370C>T	p.Pro1124Ser	p.P1124S	ENST00000310581	NM_198253.2	1124	Ccc/Tcc																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197135	26197135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	265	304	0	ENST00000356476.2:c.344C>A	p.Ala115Asp	p.A115D	ENST00000356476		115	gCc/gAc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522485	157522485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	181	709	0	ENST00000346085.5:c.4757C>T	p.Thr1586Met	p.T1586M	ENST00000346085	NM_020732.3	1586	aCg/aTg																																																																														
HGF	0	MSKCC	GRCh37	7	81372744	81372744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	194	324	0	ENST00000222390.5:c.790G>A	p.Asp264Asn	p.D264N	ENST00000222390	NM_000601.4	264	Gat/Aat																																																																														
PREX2	0	MSKCC	GRCh37	8	68930152	68930152	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	161	386	2	ENST00000288368.4:c.213G>T	p.Lys71Asn	p.K71N	ENST00000288368	NM_024870.2	71	aaG/aaT																																																																														
PREX2	0	MSKCC	GRCh37	8	69000034	69000035	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	463	462	2	ENST00000288368.4:c.2103_2104delinsAT	p.Val702Leu	p.V702L	ENST00000288368	NM_024870.2	701	gcTGta/gcATta																																																																														
STAG2	0	MSKCC	GRCh37	X	123220430	123220430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	90	462	0	ENST00000218089.9:c.3087G>T	p.Gln1029His	p.Q1029H	ENST00000218089	NM_001042749.1	1029	caG/caT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	221	428	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0018531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	377	642	3	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	44	233	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac																																																																														
EGFR	0	MSKCC	GRCh37	7	55242483	55242506	+	inframe_deletion	In_Frame_Del	DEL	ATCTCCGAAAGCCAACAAGGAAAT	ATCTCCGAAAGCCAACAAGGAAAT	-			P-0018531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	158	516	0	ENST00000275493.2:c.2253_2276del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	751	acATCTCCGAAAGCCAACAAGGAAATc/acc																																																																														
FANCA	0	MSKCC	GRCh37	16	89813004	89813004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	116	523	0	ENST00000389301.3:c.3501G>T	p.Leu1167Phe	p.L1167F	ENST00000389301	NM_000135.2	1167	ttG/ttT																																																																														
KDM5A	0	MSKCC	GRCh37	12	441056	441056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	102	427	0	ENST00000399788.2:c.1702C>T	p.Arg568Cys	p.R568C	ENST00000399788	NM_001042603.1	568	Cgt/Tgt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832547	72832547	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	33	281	1	ENST00000268489.5:c.4034A>T	p.Lys1345Ile	p.K1345I	ENST00000268489	NM_006885.3	1345	aAa/aTa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8339010	8339010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	137	334	2	ENST00000356435.5:c.5291C>A	p.Ala1764Glu	p.A1764E	ENST00000356435		1764	gCa/gAa																																																																														
TP53	0	MSKCC	GRCh37	17	7579409	7579409	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	366	454	0	ENST00000269305.4:c.278delT	p.Leu93ArgfsTer30	p.L93Rfs*30	ENST00000269305	NM_001126112.2	93	cTg/cg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	106	366	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1432	186	652	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
RB1	0	MSKCC	GRCh37	13	49037969	49037969	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	231	413	0	ENST00000267163.4:c.2209G>T	p.Glu737Ter	p.E737*	ENST00000267163	NM_000321.2	737	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1682	141	817	1	ENST00000269305.4:c.422G>T	p.Cys141Phe	p.C141F	ENST00000269305	NM_001126112.2	141	tGc/tTc																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792426	33792426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1471	116	715	0	ENST00000498907.2:c.895A>G	p.Ser299Gly	p.S299G	ENST00000498907	NM_004364.3	299	Agc/Ggc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71949116	71949116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	67	357	0	ENST00000298229.2:c.3583G>C	p.Gly1195Arg	p.G1195R	ENST00000298229	NM_001567.3	1195	Ggg/Cgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431385	49431385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	149	435	1	ENST00000301067.7:c.9754C>A	p.Leu3252Met	p.L3252M	ENST00000301067	NM_003482.3	3252	Ctg/Atg																																																																														
GREM1	0	MSKCC	GRCh37	15	33022994	33022994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	140	461	0	ENST00000300177.4:c.103C>A	p.Pro35Thr	p.P35T	ENST00000300177	NM_001191322.1	35	Ccg/Acg																																																																														
NUP93	0	MSKCC	GRCh37	16	56878460	56878460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	130	439	0	ENST00000308159.5:c.2399C>T	p.Pro800Leu	p.P800L	ENST00000308159	NM_014669.4	800	cCa/cTa																																																																														
STAT5B	0	MSKCC	GRCh37	17	40359681	40359681	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148568485		P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	113	649	1	ENST00000293328.3:c.1972G>A	p.Asp658Asn	p.D658N	ENST00000293328	NM_012448.3	658	Gac/Aac																																																																														
RAD51C	0	MSKCC	GRCh37	17	56774215	56774215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	54	276	0	ENST00000337432.4:c.566G>T	p.Gly189Val	p.G189V	ENST00000337432	NM_058216.2	189	gGa/gTa																																																																														
INSR	0	MSKCC	GRCh37	19	7152938	7152938	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	116	342	0	ENST00000302850.5:c.2030G>T	p.Gly677Val	p.G677V	ENST00000302850	NM_000208.2	677	gGg/gTg																																																																														
MYCN	0	MSKCC	GRCh37	2	16085842	16085842	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	201	463	0	ENST00000281043.3:c.1018G>T	p.Glu340Ter	p.E340*	ENST00000281043	NM_005378.4	340	Gag/Tag																																																																														
CUL3	0	MSKCC	GRCh37	2	225339036	225339037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	169	542	0	ENST00000264414.4:c.2232dup	p.Ile745TyrfsTer2	p.I745Yfs*2	ENST00000264414	NM_003590.4	744	-/T																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665549	138665549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	66	363	0	ENST00000330315.3:c.16C>T	p.Pro6Ser	p.P6S	ENST00000330315	NM_023067.3	6	Ccc/Tcc																																																																														
TP63	0	MSKCC	GRCh37	3	189526312	189526312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	107	337	2	ENST00000264731.3:c.576G>T	p.Trp192Cys	p.W192C	ENST00000264731	NM_003722.4	192	tgG/tgT																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27777855	27777855	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	18	111	0	ENST00000369163.2:c.4G>C	p.Ala2Pro	p.A2P	ENST00000369163	NM_003536.2	2	Gcg/Ccg																																																																														
AGO2	0	MSKCC	GRCh37	8	141566298	141566298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	64	320	0	ENST00000220592.5:c.1114G>C	p.Ala372Pro	p.A372P	ENST00000220592	NM_012154.3	372	Gcg/Ccg																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409422	80409422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	56	395	1	ENST00000286548.4:c.692C>T	p.Ala231Val	p.A231V	ENST00000286548	NM_002072.3	231	gCg/gTg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879810	37879810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	264	277	0	ENST00000269571.5:c.2105C>T	p.Pro702Leu	p.P702L	ENST00000269571		702	cCt/cTt																																																																														
TBX3	0	MSKCC	GRCh37	12	115118930	115118930	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	256	252	0	ENST00000257566.3:c.411del	p.Val138Ter	p.V138*	ENST00000257566	NM_016569.3	137	aaA/aa																																																																														
MGA	0	MSKCC	GRCh37	15	42050032	42050032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	213	285	0	ENST00000219905.7:c.7186C>T	p.Arg2396Ter	p.R2396*	ENST00000219905	NM_001164273.1	2396	Cga/Tga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591116	67591151	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TTATCCAGCTGAGAAAGACGAGAGACCAATACTTGA	TTATCCAGCTGAGAAAGACGAGAGACCAATACTTGA	-			P-0018536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	143	255	0	ENST00000274335.5:c.1710_1745del	p.Ile571_Met582del	p.I571_M582del	ENST00000274335		570	cTTATCCAGCTGAGAAAGACGAGAGACCAATACTTGAtg/ctg																																																																														
CTCF	0	MSKCC	GRCh37	16	67645923	67645923	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	430	505	0	ENST00000264010.4:c.851A>T	p.His284Leu	p.H284L	ENST00000264010	NM_006565.3	284	cAc/cTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36215583	36215583	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	306	668	0	ENST00000222270.7:c.3380C>G	p.Pro1127Arg	p.P1127R	ENST00000222270	NM_014727.1	1127	cCt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1222	146	612	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	133	710	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	226	520	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	121	431	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	379	315	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1285	981	732	1	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
RB1	0	MSKCC	GRCh37	13	48878061	48878062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	57	228	0	ENST00000267163.4:c.19dup	p.Arg7ProfsTer24	p.R7Pfs*24	ENST00000267163	NM_000321.2	5	acc/aCcc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857925	9857925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	181	441	0	ENST00000330684.3:c.3476G>A	p.Arg1159His	p.R1159H	ENST00000330684	NM_001134407.1	1159	cGc/cAc																																																																														
EP300	0	MSKCC	GRCh37	22	41523588	41523588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	125	501	0	ENST00000263253.7:c.1004G>A	p.Arg335His	p.R335H	ENST00000263253	NM_001429.3	335	cGc/cAc																																																																														
PAK1	0	MSKCC	GRCh37	11	77047305	77047305	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	63	413	0	ENST00000356341.3:c.1239G>C	p.Gln413His	p.Q413H	ENST00000356341	NM_002576.4	413	caG/caC																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879855	37879855	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	876	530	0	ENST00000269571.5:c.2150A>T	p.Glu717Val	p.E717V	ENST00000269571		717	gAg/gTg																																																																														
SETD2	0	MSKCC	GRCh37	3	47168147	47168147	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	117	566	0	ENST00000409792.3:c.78A>T	p.Glu26Asp	p.E26D	ENST00000409792	NM_014159.6	26	gaA/gaT																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197077	26197077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	56	215	0	ENST00000356476.2:c.402G>C	p.Glu134Asp	p.E134D	ENST00000356476		134	gaG/gaC																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652056	36652056	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1328	357	620	0	ENST00000244741.5:c.178G>T	p.Glu60Ter	p.E60*	ENST00000244741	NM_000389.4	60	Gag/Tag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0018545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	347	519	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ATRX	0	MSKCC	GRCh37	X	76888736	76888736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	43	290	1	ENST00000373344.5:c.5093G>A	p.Arg1698Gln	p.R1698Q	ENST00000373344	NM_000489.3	1698	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	170	637	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023366	27023366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	97	433	0	ENST00000324856.7:c.472C>A	p.Pro158Thr	p.P158T	ENST00000324856	NM_006015.4	158	Ccg/Acg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243480	41243483	+	frameshift_variant	Frame_Shift_Del	DEL	TTGA	TTGA	-			P-0018550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	210	680	1	ENST00000357654.3:c.4065_4068del	p.Asn1355LysfsTer10	p.N1355Kfs*10	ENST00000357654	NM_007294.3	1355	aaTCAA/aa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52595795	52595795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	112	455	0	ENST00000394830.3:c.4120G>A	p.Ala1374Thr	p.A1374T	ENST00000394830	NM_018313.4	1374	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	459	494	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	185	555	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	287	576	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0018553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			792	140	594	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431036	49431036	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			625	119	443	0	ENST00000301067.7:c.10103del	p.Val3368AspfsTer24	p.V3368Dfs*24	ENST00000301067	NM_003482.3	3368	gTa/ga																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740376	58740376	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	162	494	0	ENST00000305921.3:c.1281G>A	p.Trp427Ter	p.W427*	ENST00000305921	NM_003620.3	427	tgG/tgA																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25459811	25459811	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018553-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	269	488	0	ENST00000264709.3:c.2472del	p.Ile824MetfsTer7	p.I824Mfs*7	ENST00000264709	NM_175629.2	824	atA/at																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	548	563	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	68	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	174	187	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																														
APC	0	MSKCC	GRCh37	5	112174268	112174268	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	63	271	0	ENST00000257430.4:c.2977A>T	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	993	Aag/Tag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435347	18435347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	68	386	0	ENST00000266497.5:c.332C>A	p.Pro111His	p.P111H	ENST00000266497		111	cCt/cAt																																																																														
POLE	0	MSKCC	GRCh37	12	133254230	133254230	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	104	426	0	ENST00000320574.5:c.654T>G	p.Ile218Met	p.I218M	ENST00000320574	NM_006231.2	218	atT/atG																																																																														
MSH6	0	MSKCC	GRCh37	2	48026008	48026022	+	inframe_deletion	In_Frame_Del	DEL	GTTGCTCGAAAGCGG	GTTGCTCGAAAGCGG	-			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	64	234	0	ENST00000234420.5:c.886_900del	p.Val296_Arg300del	p.V296_R300del	ENST00000234420	NM_000179.2	296	GTTGCTCGAAAGCGG/-																																																																														
NF2	0	MSKCC	GRCh37	22	30064395	30064395	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	100	353	0	ENST00000338641.4:c.959A>T	p.Gln320Leu	p.Q320L	ENST00000338641	NM_000268.3	320	cAg/cTg																																																																														
RAD50	0	MSKCC	GRCh37	5	131923640	131923640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	62	333	0	ENST00000265335.6:c.910C>G	p.Leu304Val	p.L304V	ENST00000265335		304	Cta/Gta																																																																														
FGFR1	0	MSKCC	GRCh37	8	38273432	38273432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	127	563	0	ENST00000425967.3:c.1903G>A	p.Ala635Thr	p.A635T	ENST00000425967	NM_001174067.1	635	Gcc/Acc																																																																														
RBM10	0	MSKCC	GRCh37	X	47006855	47006855	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0018554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	91	445	0	ENST00000329236.7:c.-26G>A		p.*9*	ENST00000329236	NM_001204466.1																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	67	287	0				ENST00000310581	NM_198253.2																																																																																
TCEB1	0	MSKCC	GRCh37	8	74858968	74858968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	99	345	0	ENST00000284811.8:c.236A>G	p.Tyr79Cys	p.Y79C	ENST00000284811		79	tAc/tGc																																																																														
NF1	0	MSKCC	GRCh37	17	29676171	29676171	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	53	436	0	ENST00000358273.4:c.7223G>C	p.Arg2408Thr	p.R2408T	ENST00000358273	NM_001042492.2	2408	aGa/aCa																																																																														
PMS2	0	MSKCC	GRCh37	7	6035185	6035185	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	121	382	0	ENST00000265849.7:c.883C>G	p.Arg295Gly	p.R295G	ENST00000265849	NM_000535.5	295	Cgg/Ggg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967264	134967264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	92	463	1	ENST00000398015.3:c.2603G>A	p.Arg868Gln	p.R868Q	ENST00000398015	NM_004441.4	868	cGg/cAg																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186501406	186501406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	42	192	1	ENST00000323963.5:c.7G>A	p.Gly3Ser	p.G3S	ENST00000323963		3	Ggt/Agt																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056424	26056424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	41	197	0	ENST00000343677.2:c.233G>A	p.Ser78Asn	p.S78N	ENST00000343677	NM_005319.3	78	aGc/aAc																																																																														
TSC1	0	MSKCC	GRCh37	9	135797310	135797313	+	frameshift_variant	Frame_Shift_Del	DEL	GTGC	GTGC	AT			P-0018556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	125	291	2	ENST00000298552.3:c.556_559delinsAT	p.Ala186IlefsTer31	p.A186Ifs*31	ENST00000298552	NM_001162426.1	186	GCACtc/ATtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	354	586	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	277	381	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112176150	112176150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	96	513	0	ENST00000257430.4:c.4859C>T	p.Ser1620Leu	p.S1620L	ENST00000257430	NM_000038.5	1620	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579433	7579433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1064793279		P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	262	548	0	ENST00000269305.4:c.254del	p.Pro85LeufsTer38	p.P85Lfs*38	ENST00000269305	NM_001126112.2	85	cCt/ct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49423199	49423199	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	89	559	0	ENST00000301067.7:c.14060A>G	p.Gln4687Arg	p.Q4687R	ENST00000301067	NM_003482.3	4687	cAg/cGg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349415	89349415	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	149	668	0	ENST00000301030.4:c.3535A>C	p.Lys1179Gln	p.K1179Q	ENST00000301030	NM_001256183.1	1179	Aag/Cag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5265117	5265117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	213	635	2	ENST00000357368.4:c.470C>T	p.Ala157Val	p.A157V	ENST00000357368	NM_002850.3	157	gCa/gTa																																																																														
BARD1	0	MSKCC	GRCh37	2	215610572	215610579	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TGTTCATC	TGTTCATC	-			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	47	468	0	ENST00000260947.4:c.1678-1_1684del		p.X560_splice	ENST00000260947	NM_000465.2	560																																																																															
ATRX	0	MSKCC	GRCh37	X	76855249	76855249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	89	616	1	ENST00000373344.5:c.5738C>T	p.Ser1913Leu	p.S1913L	ENST00000373344	NM_000489.3	1913	tCa/tTa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508988	106508988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	110	309	2	ENST00000359195.3:c.982G>T	p.Asp328Tyr	p.D328Y	ENST00000359195	NM_002649.2	328	Gac/Tac																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1311	115	593	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	104	536	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
PTPRT	0	MSKCC	GRCh37	20	41076911	41076911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1348	83	505	0	ENST00000373198.4:c.1509C>A	p.Tyr503Ter	p.Y503*	ENST00000373198	NM_133170.3	503	taC/taA																																																																														
SMYD3	0	MSKCC	GRCh37	1	246498755	246498755	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	62	438	0	ENST00000388985.4:c.250A>G	p.Lys84Glu	p.K84E	ENST00000388985		84	Aag/Gag																																																																														
JAK3	0	MSKCC	GRCh37	19	17953149	17953149	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1182	116	561	0	ENST00000458235.1:c.837C>G	p.Ile279Met	p.I279M	ENST00000458235	NM_000215.3	279	atC/atG																																																																														
SRC	0	MSKCC	GRCh37	20	36031278	36031278	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	71	345	0	ENST00000358208.4:c.1397A>G	p.Tyr466Cys	p.Y466C	ENST00000358208		466	tAc/tGc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41420030	41420030	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	79	348	0	ENST00000373198.4:c.291G>T	p.Glu97Asp	p.E97D	ENST00000373198	NM_133170.3	97	gaG/gaT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8331713	8331713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	68	385	0	ENST00000356435.5:c.5403G>T	p.Arg1801Ser	p.R1801S	ENST00000356435		1801	agG/agT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	208	537	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	456	528	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																																																														
ATM	0	MSKCC	GRCh37	11	108183190	108183191	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	269	401	0	ENST00000278616.4:c.5977dupA	p.Ser1993LysfsTer2	p.S1993Kfs*2	ENST00000278616	NM_000051.3	1991	gaa/gAaa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576110	88576110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	251	516	0	ENST00000360948.2:c.1563C>A	p.His521Gln	p.H521Q	ENST00000360948	NM_001012338.2	521	caC/caA																																																																														
DOT1L	0	MSKCC	GRCh37	19	2217784	2217785	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	92	549	1	ENST00000398665.3:c.2558_2559delinsCT	p.Arg853Pro	p.R853P	ENST00000398665	NM_032482.2	853	cGC/cCT																																																																														
PPARG	0	MSKCC	GRCh37	3	12458359	12458359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	120	570	0	ENST00000287820.6:c.976G>C	p.Glu326Gln	p.E326Q	ENST00000287820	NM_015869.4	326	Gag/Cag																																																																														
SDHA	0	MSKCC	GRCh37	5	233693	233693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	39	310	0	ENST00000264932.6:c.997G>T	p.Val333Phe	p.V333F	ENST00000264932	NM_004168.2	333	Gtc/Ttc																																																																														
RASA1	0	MSKCC	GRCh37	5	86672787	86672787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	163	277	2	ENST00000274376.6:c.2274G>T	p.Arg758Ser	p.R758S	ENST00000274376	NM_002890.2	758	agG/agT																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509421	106509421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	162	502	0	ENST00000359195.3:c.1415G>T	p.Arg472Leu	p.R472L	ENST00000359195	NM_002649.2	472	cGt/cTt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40911143	40911143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	195	387	1	ENST00000373198.4:c.2162G>A	p.Arg721His	p.R721H	ENST00000373198	NM_133170.3	721	cGt/cAt																																																																														
AXIN1	0	MSKCC	GRCh37	16	347183	347183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	256	445	0	ENST00000262320.3:c.1828G>A	p.Glu610Lys	p.E610K	ENST00000262320	NM_003502.3	610	Gag/Aag																																																																														
POLD1	0	MSKCC	GRCh37	19	50917056	50917056	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	270	447	0	ENST00000440232.2:c.2308G>C	p.Glu770Gln	p.E770Q	ENST00000440232	NM_002691.3	770	Gag/Cag																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31368160	31368160	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	238	442	0	ENST00000328111.2:c.31G>C	p.Glu11Gln	p.E11Q	ENST00000328111	NM_006892.3	11	Gag/Cag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1940200	1940200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	81	146	0	ENST00000382891.5:c.1697C>T	p.Thr566Met	p.T566M	ENST00000382891	NM_133335.3	566	aCg/aTg																																																																														
RAD21	0	MSKCC	GRCh37	8	117874084	117874084	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	138	308	0	ENST00000297338.2:c.370T>G	p.Leu124Val	p.L124V	ENST00000297338	NM_006265.2	124	Tta/Gta																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	215	269	3	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779647	3779663	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCTTCATCTTCTGG	CCCGCTTCATCTTCTGG	-			P-0018573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	424	383	0	ENST00000262367.5:c.5385_5401del	p.Gln1796GlyfsTer164	p.Q1796Gfs*164	ENST00000262367	NM_004380.2	1795	tgCCAGAAGATGAAGCGGGtg/tgtg																																																																														
CCND1	0	MSKCC	GRCh37	11	69457866	69457866	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1328	77	496	0	ENST00000227507.2:c.266T>A	p.Leu89Gln	p.L89Q	ENST00000227507	NM_053056.2	89	cTg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578268	7578269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCC			P-0018574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1404	96	468	0	ENST00000269305.4:c.580_581insGGAT	p.Leu194ArgfsTer16	p.L194Rfs*16	ENST00000269305	NM_001126112.2	194	ctt/cGGATtt																																																																														
PAK7	0	MSKCC	GRCh37	20	9543608	9543608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	281	552	2	ENST00000353224.5:c.1546G>A	p.Gly516Ser	p.G516S	ENST00000353224	NM_177990.2	516	Ggc/Agc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443487	49443487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	193	298	0	ENST00000301067.7:c.3884C>T	p.Pro1295Leu	p.P1295L	ENST00000301067	NM_003482.3	1295	cCa/cTa																																																																														
LYN	0	MSKCC	GRCh37	8	56864666	56864666	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1404	312	560	0	ENST00000519728.1:c.629A>T	p.His210Leu	p.H210L	ENST00000519728	NM_002350.3	210	cAt/cTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	131	381	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577072	7577090	+	frameshift_variant	Frame_Shift_Del	DEL	AGATTCTCTTCCTCTGTGC	AGATTCTCTTCCTCTGTGC	-			P-0018576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	162	607	2	ENST00000269305.4:c.848_866del	p.Arg283ProfsTer56	p.R283Pfs*56	ENST00000269305	NM_001126112.2	283	cGCACAGAGGAAGAGAATCTc/cc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5238941	5238941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	43	246	0	ENST00000357368.4:c.1838C>T	p.Thr613Met	p.T613M	ENST00000357368	NM_002850.3	613	aCg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112174484	112174484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	23	307	0	ENST00000257430.4:c.3193C>T	p.Gln1065Ter	p.Q1065*	ENST00000257430	NM_000038.5	1065	Caa/Taa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123239457	123239457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	46	415	0	ENST00000358487.5:c.2380G>A	p.Asp794Asn	p.D794N	ENST00000358487	NM_000141.4	794	Gat/Aat																																																																														
RHOA	0	MSKCC	GRCh37	3	49405962	49405962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	99	504	1	ENST00000418115.1:c.176A>G	p.Asp59Gly	p.D59G	ENST00000418115	NM_001664.2	59	gAc/gGc																																																																														
APC	0	MSKCC	GRCh37	5	112175532	112175532	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	40	277	0	ENST00000257430.4:c.4241del	p.Val1414GlufsTer5	p.V1414Efs*5	ENST00000257430	NM_000038.5	1414	gTa/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7577155	7577163	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTACTCAG	ACTACTCAG	-			P-0018580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	375	533	2	ENST00000269305.4:c.783-8_783del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
PTPRS	0	MSKCC	GRCh37	19	5210817	5210817	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0018580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	71	348	0	ENST00000357368.4:c.5235-1G>A		p.X1745_splice	ENST00000357368	NM_002850.3	1745																																																																															
CTNNB1	0	MSKCC	GRCh37	3	41265569	41265569	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	141	418	0	ENST00000349496.5:c.10C>T	p.Gln4Ter	p.Q4*	ENST00000349496	NM_001904.3	4	Caa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112170670	112170670	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0018580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	85	333	0	ENST00000257430.4:c.1766T>A	p.Leu589Ter	p.L589*	ENST00000257430	NM_000038.5	589	tTg/tAg																																																																														
APC	0	MSKCC	GRCh37	5	112175482	112175486	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTC	GAGTC	-			P-0018580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	135	285	0	ENST00000257430.4:c.4192_4196del	p.Ser1398PhefsTer9	p.S1398Ffs*9	ENST00000257430	NM_000038.5	1397	gaGAGTCgt/gagt																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0018581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	317	409	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	197	295	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470920	25470920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	276	421	1	ENST00000264709.3:c.841G>A	p.Glu281Lys	p.E281K	ENST00000264709	NM_175629.2	281	Gag/Aag																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012397	176012397	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	378	439	0	ENST00000367669.3:c.1537G>T	p.Glu513Ter	p.E513*	ENST00000367669	NM_022457.5	513	Gag/Tag																																																																														
HRAS	0	MSKCC	GRCh37	11	533919	533919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	461	493	0	ENST00000311189.7:c.137T>C	p.Ile46Thr	p.I46T	ENST00000311189		46	aTt/aCt																																																																														
PGR	0	MSKCC	GRCh37	11	100909864	100909864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	180	235	0	ENST00000325455.5:c.2785C>T	p.Leu929Phe	p.L929F	ENST00000325455	NM_001202474.3	929	Ctc/Ttc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18552781	18552781	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	273	303	0	ENST00000266497.5:c.2192G>T	p.Ser731Ile	p.S731I	ENST00000266497		731	aGt/aTt																																																																														
FLT1	0	MSKCC	GRCh37	13	28931751	28931751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	369	299	1	ENST00000282397.4:c.2188C>T	p.His730Tyr	p.H730Y	ENST00000282397	NM_002019.4	730	Cac/Tac																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873733	35873733	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	1057	460	0	ENST00000216797.5:c.118G>T	p.Glu40Ter	p.E40*	ENST00000216797	NM_020529.2	40	Gag/Tag																																																																														
AURKB	0	MSKCC	GRCh37	17	8108555	8108555	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	451	471	0	ENST00000585124.1:c.840G>C	p.Glu280Asp	p.E280D	ENST00000585124	NM_004217.3	280	gaG/gaC																																																																														
NF1	0	MSKCC	GRCh37	17	29667577	29667577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	480	503	0	ENST00000358273.4:c.6976G>A	p.Asp2326Asn	p.D2326N	ENST00000358273	NM_001042492.2	2326	Gat/Aat																																																																														
BCL2	0	MSKCC	GRCh37	18	60985718	60985718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	135	83	0	ENST00000333681.4:c.182C>T	p.Ala61Val	p.A61V	ENST00000333681		61	gCa/gTa																																																																														
MSH6	0	MSKCC	GRCh37	2	48033438	48033438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	366	438	0	ENST00000234420.5:c.3742C>G	p.His1248Asp	p.H1248D	ENST00000234420	NM_000179.2	1248	Cac/Gac																																																																														
ACVR1	0	MSKCC	GRCh37	2	158622669	158622669	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	165	323	0	ENST00000263640.3:c.830C>G	p.Thr277Ser	p.T277S	ENST00000263640	NM_001105.4	277	aCc/aGc																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0018582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	342	401	0	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
ATR	0	MSKCC	GRCh37	3	142254038	142254038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	244	302	0	ENST00000350721.4:c.3829G>C	p.Glu1277Gln	p.E1277Q	ENST00000350721	NM_001184.3	1277	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	52	435	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP63	0	MSKCC	GRCh37	3	189526287	189526287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	95	334	0	ENST00000264731.3:c.551C>T	p.Ser184Leu	p.S184L	ENST00000264731	NM_003722.4	184	tCg/tTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0018589-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	105	436	3	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	31	522	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	33	462	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163746	32163746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	43	351	0	ENST00000375023.3:c.5480C>T	p.Ala1827Val	p.A1827V	ENST00000375023	NM_004557.3	1827	gCc/gTc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	402	402	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178169	56178169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	270	479	1	ENST00000399503.3:c.3142C>T	p.Gln1048Ter	p.Q1048*	ENST00000399503	NM_005921.1	1048	Cag/Tag																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522040	157522040	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	225	390	1	ENST00000346085.5:c.4312A>T	p.Ile1438Phe	p.I1438F	ENST00000346085	NM_020732.3	1438	Atc/Ttc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859843	151859847	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTT	TTCTT	-			P-0018592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	231	221	0	ENST00000262189.6:c.10815_10819del	p.Lys3605AsnfsTer8	p.K3605Nfs*8	ENST00000262189	NM_170606.2	3605	aaAAGAAca/aaca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	204	395	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	108	393	0	ENST00000256078.4:c.351A>C	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaC																																																																														
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	160	370	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct																																																																														
KDR	0	MSKCC	GRCh37	4	55968633	55968633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200338299		P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	140	462	0	ENST00000263923.4:c.2030C>T	p.Thr677Met	p.T677M	ENST00000263923	NM_002253.2	677	aCg/aTg																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225408	26225408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	56	124	0	ENST00000360408.1:c.26G>A	p.Arg9His	p.R9H	ENST00000360408	NM_003532.2	9	cGt/cAt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944325	81944325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	179	383	0	ENST00000359376.3:c.1934C>T	p.Pro645Leu	p.P645L	ENST00000359376	NM_002661.3	645	cCg/cTg																																																																														
EP300	0	MSKCC	GRCh37	22	41548348	41548349	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	142	358	0	ENST00000263253.7:c.3139_3140del	p.Lys1047AspfsTer41	p.K1047Dfs*41	ENST00000263253	NM_001429.3	1046	AAa/a																																																																														
FAT1	0	MSKCC	GRCh37	4	187521478	187521478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	131	400	0	ENST00000441802.2:c.11677G>C	p.Gly3893Arg	p.G3893R	ENST00000441802	NM_005245.3	3893	Gga/Cga																																																																														
CARD11	0	MSKCC	GRCh37	7	2959240	2959240	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354898		P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	132	436	0	ENST00000396946.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000396946	NM_032415.4	759	cGg/cAg																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540123	23540123	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	52	113	0	ENST00000380871.4:c.280G>T	p.Glu94Ter	p.E94*	ENST00000380871	NM_006167.3	94	Gag/Tag																																																																														
PREX2	0	MSKCC	GRCh37	8	68982088	68982088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	166	519	1	ENST00000288368.4:c.1462C>T	p.Arg488Cys	p.R488C	ENST00000288368	NM_024870.2	488	Cgt/Tgt																																																																														
VHL	0	MSKCC	GRCh37	3	10183742	10183742	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	177	475	0	ENST00000256474.2:c.213del	p.Ser72ProfsTer87	p.S72Pfs*87	ENST00000256474	NM_000551.3	71	Ccc/cc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324674	31324674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11546719		P-0018595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	19	68	2	ENST00000412585.2:c.134G>A	p.Arg45His	p.R45H	ENST00000412585	NM_005514.6	45	cGc/cAc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52713606	52713607	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0018595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	156	418	0	ENST00000394830.3:c.121_122del	p.Leu41SerfsTer11	p.L41Sfs*11	ENST00000394830	NM_018313.4	41	CTt/t																																																																														
PRDM14	0	MSKCC	GRCh37	8	70980496	70980496	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	289	758	0	ENST00000276594.2:c.881A>G	p.Lys294Arg	p.K294R	ENST00000276594	NM_024504.3	294	aAg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0018596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	400	619	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ARID2	0	MSKCC	GRCh37	12	46125067	46125067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	51	201	0	ENST00000334344.6:c.254C>T	p.Ala85Val	p.A85V	ENST00000334344	NM_152641.2	85	gCt/gTt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214422	5214422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	216	489	0	ENST00000357368.4:c.4564G>A	p.Asp1522Asn	p.D1522N	ENST00000357368	NM_002850.3	1522	Gat/Aat																																																																														
ALK	0	MSKCC	GRCh37	2	29455286	29455286	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	61	444	0	ENST00000389048.3:c.2516T>C	p.Ile839Thr	p.I839T	ENST00000389048	NM_004304.4	839	aTc/aCc																																																																														
SOS1	0	MSKCC	GRCh37	2	39239394	39239394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	75	503	0	ENST00000402219.2:c.2263C>T	p.Gln755Ter	p.Q755*	ENST00000402219	NM_005633.3	755	Cag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47163139	47163139	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0018596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	125	303	0	ENST00000409792.3:c.2987C>G	p.Ser996Ter	p.S996*	ENST00000409792	NM_014159.6	996	tCa/tGa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	85	690	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0018598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	25	358	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																														
ATM	0	MSKCC	GRCh37	11	108141874	108141874	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	43	358	1	ENST00000278616.4:c.2921+1G>A		p.X974_splice	ENST00000278616	NM_000051.3	974																																																																															
YAP1	0	MSKCC	GRCh37	11	102056769	102056769	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	37	511	1	ENST00000282441.5:c.709G>T	p.Glu237Ter	p.E237*	ENST00000282441	NM_001130145.2	237	Gaa/Taa																																																																														
STK11	0	MSKCC	GRCh37	19	1223056	1223057	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	139	589	1	ENST00000326873.7:c.994dup	p.Trp332LeufsTer28	p.W332Lfs*28	ENST00000326873	NM_000455.4	331	-/T																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730771	40730771	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			816	97	483	0	ENST00000373198.4:c.3764T>C	p.Leu1255Pro	p.L1255P	ENST00000373198	NM_133170.3	1255	cTg/cCg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100974	41100974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			863	100	506	0	ENST00000373198.4:c.1382G>T	p.Arg461Leu	p.R461L	ENST00000373198	NM_133170.3	461	cGa/cTa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156687	55156687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			744	93	334	0	ENST00000257290.5:c.3088G>C	p.Glu1030Gln	p.E1030Q	ENST00000257290	NM_006206.4	1030	Gag/Cag																																																																														
INPP4B	0	MSKCC	GRCh37	4	143129578	143129578	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0018598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			341	44	351	0	ENST00000262992.4:c.1072G>C	p.Asp358His	p.D358H	ENST00000262992	NM_001101669.1	358	Gat/Cat																																																																														
FAT1	0	MSKCC	GRCh37	4	187524351	187524351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			802	60	393	0	ENST00000441802.2:c.11329del	p.Ala3777GlnfsTer56	p.A3777Qfs*56	ENST00000441802	NM_005245.3	3777	Gca/ca																																																																														
RAD50	0	MSKCC	GRCh37	5	131972870	131972870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	34	484	0	ENST00000265335.6:c.3453G>T	p.Trp1151Cys	p.W1151C	ENST00000265335		1151	tgG/tgT																																																																														
PNRC1	0	MSKCC	GRCh37	6	89790704	89790704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1248	131	746	3	ENST00000336032.3:c.91G>T	p.Ala31Ser	p.A31S	ENST00000336032	NM_006813.2	31	Gcc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	82	179	0				ENST00000310581	NM_198253.2																																																																																
PMS2	0	MSKCC	GRCh37	7	6026708	6026708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	188	644	0	ENST00000265849.7:c.1688G>A	p.Arg563Gln	p.R563Q	ENST00000265849	NM_000535.5	563	cGa/cAa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18552630	18552630	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200787716		P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	235	499	0	ENST00000266497.5:c.2041C>T	p.Arg681Cys	p.R681C	ENST00000266497		681	Cgc/Tgc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306689	41306689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	190	520	0	ENST00000373198.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000373198	NM_133170.3	324	Gaa/Aaa																																																																														
CHEK2	0	MSKCC	GRCh37	22	29092959	29092959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	257	523	0	ENST00000328354.6:c.1025G>A	p.Gly342Asp	p.G342D	ENST00000328354	NM_007194.3	342	gGt/gAt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	170	577	0	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg																																																																														
FLT1	0	MSKCC	GRCh37	13	29004278	29004278	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	181	356	0	ENST00000282397.4:c.1015C>T	p.Arg339Ter	p.R339*	ENST00000282397	NM_002019.4	339	Cga/Tga																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120845	94120845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	310	522	0	ENST00000369303.4:c.206G>A	p.Arg69Gln	p.R69Q	ENST00000369303	NM_004440.3	69	cGa/cAa																																																																														
NF1	0	MSKCC	GRCh37	17	29557285	29557285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	154	318	1	ENST00000358273.4:c.2998C>T	p.Arg1000Cys	p.R1000C	ENST00000358273	NM_001042492.2	1000	Cgt/Tgt																																																																														
HGF	0	MSKCC	GRCh37	7	81381466	81381466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	178	309	0	ENST00000222390.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000222390	NM_000601.4	199	Gaa/Aaa																																																																														
HGF	0	MSKCC	GRCh37	7	81388032	81388032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	654	521	0	ENST00000222390.5:c.343G>A	p.Glu115Lys	p.E115K	ENST00000222390	NM_000601.4	115	Gaa/Aaa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435658	18435658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143896492		P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	179	296	0	ENST00000266497.5:c.643G>A	p.Gly215Arg	p.G215R	ENST00000266497		215	Gga/Aga																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120729	94120729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	253	395	0	ENST00000369303.4:c.322G>A	p.Asp108Asn	p.D108N	ENST00000369303	NM_004440.3	108	Gat/Aat																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944581	40944581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	196	413	0	ENST00000373198.4:c.1921G>A	p.Asp641Asn	p.D641N	ENST00000373198	NM_133170.3	641	Gac/Aac																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099518	157099518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	100	211	0	ENST00000346085.5:c.455C>T	p.Pro152Leu	p.P152L	ENST00000346085	NM_020732.3	152	cCc/cTc																																																																														
CBL	0	MSKCC	GRCh37	11	119149242	119149242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	264	479	0	ENST00000264033.4:c.1250C>T	p.Pro417Leu	p.P417L	ENST00000264033	NM_005188.3	417	cCt/cTt																																																																														
JAK3	0	MSKCC	GRCh37	19	17945669	17945669	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201236217		P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	162	572	0	ENST00000458235.1:c.2191C>T	p.Pro731Ser	p.P731S	ENST00000458235	NM_000215.3	731	Cct/Tct																																																																														
ASXL2	0	MSKCC	GRCh37	2	25991682	25991682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	204	334	0	ENST00000435504.4:c.560C>T	p.Ser187Phe	p.S187F	ENST00000435504		187	tCc/tTc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32185011	32185011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	204	546	0	ENST00000375023.3:c.1657G>A	p.Asp553Asn	p.D553N	ENST00000375023	NM_004557.3	553	Gat/Aat																																																																														
JAK3	0	MSKCC	GRCh37	19	17950309	17950309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	199	596	0	ENST00000458235.1:c.1418C>T	p.Ser473Phe	p.S473F	ENST00000458235	NM_000215.3	473	tCc/tTc																																																																														
MCL1	0	MSKCC	GRCh37	1	150551730	150551730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	52	125	0	ENST00000369026.2:c.277C>T	p.Pro93Ser	p.P93S	ENST00000369026	NM_021960.4	93	Ccc/Tcc																																																																														
IKBKE	0	MSKCC	GRCh37	1	206647698	206647698	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	110	433	1	ENST00000367120.3:c.112A>T	p.Lys38Ter	p.K38*	ENST00000367120	NM_014002.3	38	Aag/Tag																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612719	228612719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	177	558	1	ENST00000366696.1:c.308G>A	p.Gly103Glu	p.G103E	ENST00000366696	NM_003493.2	103	gGg/gAg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850834	63850834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	622	475	0	ENST00000279873.7:c.1612C>T	p.Pro538Ser	p.P538S	ENST00000279873	NM_032199.2	538	Ccc/Tcc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942225	71942225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	144	376	0	ENST00000298229.2:c.1489T>C	p.Tyr497His	p.Y497H	ENST00000298229	NM_001567.3	497	Tac/Cac																																																																														
PAK1	0	MSKCC	GRCh37	11	77054919	77054919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	242	471	0	ENST00000356341.3:c.943G>A	p.Glu315Lys	p.E315K	ENST00000356341	NM_002576.4	315	Gag/Aag																																																																														
MRE11A	0	MSKCC	GRCh37	11	94219124	94219124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	348	552	0	ENST00000323929.3:c.280C>T	p.Leu94Phe	p.L94F	ENST00000323929	NM_005591.3	94	Ctc/Ttc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18699346	18699346	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	231	490	0	ENST00000266497.5:c.3447A>C	p.Glu1149Asp	p.E1149D	ENST00000266497		1149	gaA/gaC																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18699356	18699356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	213	479	0	ENST00000266497.5:c.3457C>A	p.His1153Asn	p.H1153N	ENST00000266497		1153	Cat/Aat																																																																														
FLT3	0	MSKCC	GRCh37	13	28608048	28608048	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	198	546	0	ENST00000241453.7:c.1918C>T	p.Gln640Ter	p.Q640*	ENST00000241453	NM_004119.2	640	Cag/Tag																																																																														
IGF1R	0	MSKCC	GRCh37	15	99482535	99482535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	209	541	0	ENST00000268035.6:c.3403G>A	p.Asp1135Asn	p.D1135N	ENST00000268035	NM_000875.3	1135	Gac/Aac																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857890	9857890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	144	465	0	ENST00000330684.3:c.3511C>T	p.Pro1171Ser	p.P1171S	ENST00000330684	NM_001134407.1	1171	Ccc/Tcc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858804	9858804	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	47	114	0	ENST00000330684.3:c.2597G>A	p.Gly866Asp	p.G866D	ENST00000330684	NM_001134407.1	866	gGc/gAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9916163	9916163	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	221	479	2	ENST00000330684.3:c.2126A>T	p.Asn709Ile	p.N709I	ENST00000330684	NM_001134407.1	709	aAt/aTt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15938124	15938124	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	151	279	0	ENST00000268712.3:c.7090A>T	p.Arg2364Trp	p.R2364W	ENST00000268712	NM_006311.3	2364	Agg/Tgg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15973617	15973617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	172	340	0	ENST00000268712.3:c.4375C>T	p.Leu1459Phe	p.L1459F	ENST00000268712	NM_006311.3	1459	Ctt/Ttt																																																																														
NF1	0	MSKCC	GRCh37	17	29533389	29533390	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	129	248	1	ENST00000358273.4:c.1392_1392+1delinsAA		p.X464_splice	ENST00000358273	NM_001042492.2	464																																																																															
NF1	0	MSKCC	GRCh37	17	29654858	29654858	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	114	203	0	ENST00000358273.4:c.5609+1G>A		p.X1870_splice	ENST00000358273	NM_001042492.2	1870																																																																															
CDK12	0	MSKCC	GRCh37	17	37627626	37627626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	242	682	0	ENST00000447079.4:c.1541C>G	p.Thr514Ser	p.T514S	ENST00000447079	NM_015083.1	514	aCt/aGt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63530033	63530033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	146	425	0	ENST00000307078.5:c.2402A>G	p.Tyr801Cys	p.Y801C	ENST00000307078	NM_004655.3	801	tAt/tGt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152053	11152055	+	stop_gained	Nonsense_Mutation	ONP	AGC	AGC	CAT			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	125	473	3	ENST00000344626.4:c.4241_4243delinsCAT	p.Lys1414_Arg1415delinsThrTer	p.K1414_R1415delinsT*	ENST00000344626	NM_003072.3	1414	aAGCga/aCATga																																																																														
BRD4	0	MSKCC	GRCh37	19	15355251	15355252	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	122	351	1	ENST00000263377.2:c.2371_2372delinsTT	p.Pro791Leu	p.P791L	ENST00000263377	NM_058243.2	791	CCg/TTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36215909	36215909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	196	653	0	ENST00000222270.7:c.3449C>T	p.Pro1150Leu	p.P1150L	ENST00000222270	NM_014727.1	1150	cCc/cTc																																																																														
POLD1	0	MSKCC	GRCh37	19	50912133	50912133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	220	648	0	ENST00000440232.2:c.1867C>T	p.Arg623Trp	p.R623W	ENST00000440232	NM_002691.3	623	Cgg/Tgg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25967018	25967018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	279	619	1	ENST00000435504.4:c.2188G>A	p.Glu730Lys	p.E730K	ENST00000435504		730	Gaa/Aaa																																																																														
SOS1	0	MSKCC	GRCh37	2	39239427	39239427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	396	589	0	ENST00000402219.2:c.2230A>G	p.Arg744Gly	p.R744G	ENST00000402219	NM_005633.3	744	Aga/Gga																																																																														
EPCAM	0	MSKCC	GRCh37	2	47602375	47602375	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	245	461	1	ENST00000263735.4:c.428G>A	p.Trp143Ter	p.W143*	ENST00000263735	NM_002354.2	143	tGg/tAg																																																																														
XPO1	0	MSKCC	GRCh37	2	61708384	61708384	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	237	460	0	ENST00000401558.2:c.3005T>C	p.Phe1002Ser	p.F1002S	ENST00000401558	NM_003400.3	1002	tTc/tCc																																																																														
XPO1	0	MSKCC	GRCh37	2	61715385	61715385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	245	463	0	ENST00000401558.2:c.2228C>T	p.Pro743Leu	p.P743L	ENST00000401558	NM_003400.3	743	cCa/cTa																																																																														
IDH1	0	MSKCC	GRCh37	2	209106839	209106839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	260	561	0	ENST00000345146.2:c.729G>T	p.Lys243Asn	p.K243N	ENST00000345146	NM_005896.2	243	aaG/aaT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248717	212248717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	216	344	0	ENST00000342788.4:c.3550G>A	p.Asp1184Asn	p.D1184N	ENST00000342788	NM_005235.2	1184	Gat/Aat																																																																														
PAK7	0	MSKCC	GRCh37	20	9520138	9520138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	165	322	0	ENST00000353224.5:c.2131C>T	p.Pro711Ser	p.P711S	ENST00000353224	NM_177990.2	711	Ccc/Tcc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46256388	46256388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	266	579	0	ENST00000371998.3:c.616G>A	p.Asp206Asn	p.D206N	ENST00000371998		206	Gat/Aat																																																																														
ERG	0	MSKCC	GRCh37	21	39755621	39755621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	183	418	2	ENST00000288319.7:c.1144C>A	p.His382Asn	p.H382N	ENST00000288319	NM_182918.3	382	Cat/Aat																																																																														
ERG	0	MSKCC	GRCh37	21	39762946	39762946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	241	520	0	ENST00000288319.7:c.890G>A	p.Gly297Glu	p.G297E	ENST00000288319	NM_182918.3	297	gGa/gAa																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42842601	42842601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	201	608	1	ENST00000398585.3:c.1256C>T	p.Ser419Phe	p.S419F	ENST00000398585	NM_001135099.1	419	tCc/tTc																																																																														
PPARG	0	MSKCC	GRCh37	3	12458273	12458273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	250	525	0	ENST00000287820.6:c.890C>T	p.Pro297Leu	p.P297L	ENST00000287820	NM_015869.4	297	cCc/cTc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713544	30713544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	241	364	1	ENST00000359013.4:c.944A>T	p.Glu315Val	p.E315V	ENST00000359013	NM_001024847.2	315	gAg/gTg																																																																														
MST1R	0	MSKCC	GRCh37	3	49939812	49939812	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	223	560	0	ENST00000296474.3:c.1230+1G>C		p.X410_splice	ENST00000296474	NM_002447.2	410																																																																															
GSK3B	0	MSKCC	GRCh37	3	119634982	119634982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	194	335	0	ENST00000316626.5:c.517C>T	p.His173Tyr	p.H173Y	ENST00000316626		173	Cat/Tat																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185155399	185155399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	174	390	1	ENST00000265026.3:c.640C>T	p.Pro214Ser	p.P214S	ENST00000265026	NM_004721.4	214	Cct/Tct																																																																														
KIT	0	MSKCC	GRCh37	4	55573320	55573320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	300	507	0	ENST00000288135.5:c.982G>A	p.Gly328Arg	p.G328R	ENST00000288135	NM_000222.2	328	Gga/Aga																																																																														
TET2	0	MSKCC	GRCh37	4	106156334	106156334	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	217	396	0	ENST00000380013.4:c.1235T>A	p.Leu412His	p.L412H	ENST00000380013	NM_001127208.2	412	cTt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112174002	112174002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	199	405	0	ENST00000257430.4:c.2711G>A	p.Arg904Lys	p.R904K	ENST00000257430	NM_000038.5	904	aGa/aAa																																																																														
APC	0	MSKCC	GRCh37	5	112175780	112175781	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	146	301	0	ENST00000257430.4:c.4489_4490delinsTT	p.Pro1497Leu	p.P1497L	ENST00000257430	NM_000038.5	1497	CCa/TTa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149499658	149499658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	203	458	1	ENST00000261799.4:c.2615C>T	p.Pro872Leu	p.P872L	ENST00000261799	NM_002609.3	872	cCg/cTg																																																																														
NSD1	0	MSKCC	GRCh37	5	176637685	176637685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	367	673	1	ENST00000439151.2:c.2285C>T	p.Ser762Phe	p.S762F	ENST00000439151	NM_022455.4	762	tCc/tTc																																																																														
TAP1	0	MSKCC	GRCh37	6	32816538	32816538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	273	651	0	ENST00000354258.4:c.1637C>T	p.Pro546Leu	p.P546L	ENST00000354258	NM_000593.5	546	cCt/cTt																																																																														
EPHA7	0	MSKCC	GRCh37	6	93968002	93968002	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	253	410	0	ENST00000369303.4:c.1925G>A	p.Gly642Glu	p.G642E	ENST00000369303	NM_004440.3	642	gGa/gAa																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553476	106553476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	120	269	0	ENST00000369096.4:c.1441C>T	p.Pro481Ser	p.P481S	ENST00000369096	NM_001198.3	481	Ccg/Tcg																																																																														
ROS1	0	MSKCC	GRCh37	6	117715410	117715410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	292	539	0	ENST00000368508.3:c.1079G>A	p.Arg360Lys	p.R360K	ENST00000368508	NM_002944.2	360	aGa/aAa																																																																														
CARD11	0	MSKCC	GRCh37	7	2978414	2978414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	206	511	0	ENST00000396946.4:c.916G>A	p.Glu306Lys	p.E306K	ENST00000396946	NM_032415.4	306	Gaa/Aaa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450319	50450320	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	187	497	1	ENST00000331340.3:c.503_504delinsTT	p.Ser168Phe	p.S168F	ENST00000331340	NM_006060.4	168	tCC/tTT																																																																														
HGF	0	MSKCC	GRCh37	7	81381519	81381519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	205	367	0	ENST00000222390.5:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000222390	NM_000601.4	181	cGa/cAa																																																																														
MET	0	MSKCC	GRCh37	7	116339295	116339295	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	269	447	0	ENST00000397752.3:c.157C>T	p.Gln53Ter	p.Q53*	ENST00000397752	NM_000245.2	53	Cag/Tag																																																																														
LYN	0	MSKCC	GRCh37	8	56866486	56866486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	241	521	1	ENST00000519728.1:c.733G>A	p.Glu245Lys	p.E245K	ENST00000519728	NM_002350.3	245	Gag/Aag																																																																														
AGO2	0	MSKCC	GRCh37	8	141542588	141542588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	161	468	0	ENST00000220592.5:c.2398C>T	p.Pro800Ser	p.P800S	ENST00000220592	NM_012154.3	800	Cca/Tca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8504362	8504362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	278	448	0	ENST00000356435.5:c.1721G>A	p.Gly574Glu	p.G574E	ENST00000356435		574	gGa/gAa																																																																														
GNAQ	0	MSKCC	GRCh37	9	80537205	80537205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	155	346	0	ENST00000286548.4:c.193T>C	p.Ser65Pro	p.S65P	ENST00000286548	NM_002072.3	65	Tca/Cca																																																																														
SYK	0	MSKCC	GRCh37	9	93641221	93641221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	176	347	2	ENST00000375746.1:c.1567G>A	p.Glu523Lys	p.E523K	ENST00000375746	NM_001174167.1	523	Gaa/Aaa																																																																														
MED12	0	MSKCC	GRCh37	X	70351431	70351431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	239	335	0	ENST00000374080.3:c.4079C>T	p.Ser1360Phe	p.S1360F	ENST00000374080		1360	tCc/tTc																																																																														
RAD51C	0	MSKCC	GRCh37	17	56801449	56801451	+	stop_gained	Nonsense_Mutation	ONP	ACC	ACC	CCT			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	209	538	0	ENST00000337432.4:c.953_955delinsCCT	p.Asp318_Arg319delinsAlaTer	p.D318_R319delinsA*	ENST00000337432	NM_058216.2	318	gACCga/gCCTga																																																																														
CDK12	0	MSKCC	GRCh37	17	37627623	37627626	+	missense_variant	Missense_Mutation	ONP	TTAC	TTAC	GTAG			P-0018600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	241	673	0	ENST00000447079.4:c.1538_1541delinsGTAG	p.Val513_Thr514delinsGlySer	p.V513_T514delinsGS	ENST00000447079	NM_015083.1	513	gTTACt/gGTAGt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	1885	593	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca																																																																														
NUF2	0	MSKCC	GRCh37	1	163310156	163310156	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0018602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	63	551	0	ENST00000271452.3:c.609A>G	p.Ile203Met	p.I203M	ENST00000271452	NM_145697.2	203	atA/atG																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612638	228612638	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146830002		P-0018602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	38	442	1	ENST00000366696.1:c.389G>A	p.Arg130His	p.R130H	ENST00000366696	NM_003493.2	130	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577027	7577028	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0018602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	178	558	0	ENST00000269305.4:c.910_911del	p.Thr304Ter	p.T304*	ENST00000269305	NM_001126112.2	304	ACt/t																																																																														
KDM5C	0	MSKCC	GRCh37	X	53228225	53228225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	132	503	0	ENST00000375401.3:c.2177A>G	p.Asp726Gly	p.D726G	ENST00000375401	NM_004187.3	726	gAc/gGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	436	565	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578206	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	518	671	0	ENST00000269305.4:c.642_643del	p.His214GlnfsTer7	p.H214Qfs*7	ENST00000269305	NM_001126112.2	214	caTAgt/cagt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11096967	11096967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	535	636	1	ENST00000344626.4:c.458C>T	p.Pro153Leu	p.P153L	ENST00000344626	NM_003072.3	153	cCg/cTg																																																																														
YAP1	0	MSKCC	GRCh37	11	101981586	101981586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	142	159	2	ENST00000282441.5:c.7C>T	p.Pro3Ser	p.P3S	ENST00000282441	NM_001130145.2	3	Ccc/Tcc																																																																														
CCND2	0	MSKCC	GRCh37	12	4409102	4409102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	155	431	0	ENST00000261254.3:c.797G>A	p.Arg266His	p.R266H	ENST00000261254	NM_001759.3	266	cGt/cAt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106523532	106523532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	294	407	0	ENST00000359195.3:c.2684C>A	p.Thr895Lys	p.T895K	ENST00000359195	NM_002649.2	895	aCa/aAa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974798	21974798	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	48	75	0	ENST00000304494.5:c.29del	p.Glu10GlyfsTer16	p.E10Gfs*16	ENST00000304494	NM_000077.4	10	gAg/gg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974798	21974798	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	48	75	0	ENST00000304494.5:c.29del	p.Glu10GlyfsTer16	p.E10Gfs*16	ENST00000304494	NM_000077.4	10	gAg/gg																																																																														
PAX5	0	MSKCC	GRCh37	9	37002716	37002716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	663	458	1	ENST00000358127.4:c.533C>T	p.Ser178Leu	p.S178L	ENST00000358127	NM_001280556.1	178	tCg/tTg																																																																														
AR	0	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	386	211	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425518	49425519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	375	478	0	ENST00000301067.7:c.12969dup	p.Pro4324ThrfsTer10	p.P4324Tfs*10	ENST00000301067	NM_003482.3	4323	-/A																																																																														
ERBB4	0	MSKCC	GRCh37	2	212537960	212537961	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	360	466	0	ENST00000342788.4:c.1644dup	p.Gly549TrpfsTer8	p.G549Wfs*8	ENST00000342788	NM_005235.2	548	-/T																																																																														
MYD88	0	MSKCC	GRCh37	3	38182032	38182032	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	98	368	0	ENST00000396334.3:c.656C>G	p.Ser219Cys	p.S219C	ENST00000396334	NM_002468.4	219	tCt/tGt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436928	49436934	+	frameshift_variant	Frame_Shift_Del	DEL	CACTGGG	CACTGGG	-			P-0018608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	425	573	0	ENST00000301067.7:c.5569_5575del	p.Pro1857ThrfsTer17	p.P1857Tfs*17	ENST00000301067	NM_003482.3	1857	CCCAGTGac/ac																																																																														
TOP1	0	MSKCC	GRCh37	20	39742653	39742653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	76	298	1	ENST00000361337.2:c.1496C>T	p.Ala499Val	p.A499V	ENST00000361337	NM_003286.2	499	gCg/gTg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591106	67591233	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAACCAGACCTTATCCAGCTGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCA	AAACCAGACCTTATCCAGCTGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCA	-			P-0018608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	53	381	0	ENST00000274335.5:c.1703_1746-11del		p.X568_splice	ENST00000274335		568																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	98	464	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PDPK1	0	MSKCC	GRCh37	16	2647662	2647662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	290	551	0	ENST00000342085.4:c.1565C>A	p.Thr522Lys	p.T522K	ENST00000342085	NM_002613.4	522	aCg/aAg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41249264	41249264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1288	150	648	1	ENST00000357654.3:c.590G>A	p.Cys197Tyr	p.C197Y	ENST00000357654	NM_007294.3	197	tGc/tAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0018612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	276	396	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
FYN	0	MSKCC	GRCh37	6	112024223	112024223	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	152	286	0	ENST00000368678.4:c.562T>G	p.Ser188Ala	p.S188A	ENST00000368678		188	Tct/Gct																																																																														
PTPRD	0	MSKCC	GRCh37	9	8497255	8497255	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	54	530	0	ENST00000356435.5:c.2336A>G	p.Asp779Gly	p.D779G	ENST00000356435		779	gAt/gGt																																																																														
NTRK2	0	MSKCC	GRCh37	9	87339182	87339182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	68	537	0	ENST00000277120.3:c.766del	p.Ser256HisfsTer17	p.S256Hfs*17	ENST00000277120		255	aTt/at																																																																														
PTEN	0	MSKCC	GRCh37	10	89692844	89692845	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0018626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	151	172	0	ENST00000371953.3:c.328_329del	p.Gln110MetfsTer4	p.Q110Mfs*4	ENST00000371953	NM_000314.4	110	CAa/a																																																																														
CCND3	0	MSKCC	GRCh37	6	41905096	41905096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	320	367	0	ENST00000372991.4:c.451G>C	p.Asp151His	p.D151H	ENST00000372991	NM_001760.3	151	Gac/Cac																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	237	728	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
HRAS	0	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	276	705	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060780	38060797	+	inframe_deletion	In_Frame_Del	DEL	GTTGATGGAGAACGGGTG	GTTGATGGAGAACGGGTG	-			P-0018627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	189	999	1	ENST00000250448.2:c.1192_1209del	p.His398_Asn403del	p.H398_N403del	ENST00000250448	NM_004496.3	398	CACCCGTTCTCCATCAAC/-																																																																														
SETD8	0	MSKCC	GRCh37	12	123875243	123875243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	25	143	1	ENST00000330479.4:c.199C>T	p.Arg67Cys	p.R67C	ENST00000330479	NM_020382.3	67	Cgt/Tgt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71015171	71015179	+	frameshift_variant	Frame_Shift_Del	DEL	TAGTGTATA	TAGTGTATA	AT			P-0018627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	45	296	1	ENST00000318789.4:c.1751_1759delinsAT	p.Leu584HisfsTer13	p.L584Hfs*13	ENST00000318789	NM_032682.5	584	cTATACACTAcc/cATcc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67588956	67588967	+	inframe_deletion	In_Frame_Del	DEL	TACAGCAGACGG	TACAGCAGACGG	-			P-0018627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	58	308	0	ENST00000274335.5:c.1047_1058del	p.Asp349_Gly353delinsGlu	p.D349_G353delinsE	ENST00000274335		349	gaTACAGCAGACGGg/gag																																																																														
SETD2	0	MSKCC	GRCh37	3	47142966	47142966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	238	639	0	ENST00000409792.3:c.4997A>G	p.Tyr1666Cys	p.Y1666C	ENST00000409792	NM_014159.6	1666	tAt/tGt																																																																														
VHL	0	MSKCC	GRCh37	3	10191506	10191506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	224	481	0	ENST00000256474.2:c.499C>G	p.Arg167Gly	p.R167G	ENST00000256474	NM_000551.3	167	Cgg/Ggg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81888166	81888166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	142	507	0	ENST00000359376.3:c.311T>C	p.Phe104Ser	p.F104S	ENST00000359376	NM_002661.3	104	tTc/tCc																																																																														
BBC3	0	MSKCC	GRCh37	19	47731527	47731527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	11	27	0	ENST00000449228.1:c.265G>T	p.Ala89Ser	p.A89S	ENST00000449228	NM_001127240.2	89	Gcc/Tcc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52620618	52620618	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	253	537	0	ENST00000394830.3:c.3135del	p.Phe1045LeufsTer89	p.F1045Lfs*89	ENST00000394830	NM_018313.4	1045	ttT/tt																																																																														
FAT1	0	MSKCC	GRCh37	4	187549832	187549832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	59	421	0	ENST00000441802.2:c.4409C>T	p.Ala1470Val	p.A1470V	ENST00000441802	NM_005245.3	1470	gCg/gTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444177	49444177	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0018629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	401	718	0	ENST00000301067.7:c.3194C>G	p.Ser1065Ter	p.S1065*	ENST00000301067	NM_003482.3	1065	tCa/tGa																																																																														
STK11	0	MSKCC	GRCh37	19	1222001	1222001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	251	449	0	ENST00000326873.7:c.916C>T	p.His306Tyr	p.H306Y	ENST00000326873	NM_000455.4	306	Cac/Tac																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3123	118	495	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	508	567	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
EP300	0	MSKCC	GRCh37	22	41545897	41545897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	511	841	2	ENST00000263253.7:c.2512C>T	p.Arg838Cys	p.R838C	ENST00000263253	NM_001429.3	838	Cgt/Tgt																																																																														
VTCN1	0	MSKCC	GRCh37	1	117695885	117695885	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	227	610	0	ENST00000369458.3:c.552A>C	p.Gln184His	p.Q184H	ENST00000369458	NM_024626.3	184	caA/caC																																																																														
NF1	0	MSKCC	GRCh37	17	29554615	29554616	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATG			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	784	503	0	ENST00000358273.4:c.2402_2405dup	p.Gln803TrpfsTer5	p.Q803Wfs*5	ENST00000358273	NM_001042492.2	800	-/GATG																																																																														
KMT2B	0	MSKCC	GRCh37	19	36209117	36209117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	21	34	0	ENST00000222270.7:c.197C>G	p.Ala66Gly	p.A66G	ENST00000222270	NM_014727.1	66	gCc/gGc																																																																														
GATA2	0	MSKCC	GRCh37	3	128200060	128200060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	100	744	1	ENST00000341105.2:c.1245G>T	p.Glu415Asp	p.E415D	ENST00000341105	NM_032638.4	415	gaG/gaT																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957826	1957826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1182	226	583	0	ENST00000382891.5:c.2792C>T	p.Thr931Met	p.T931M	ENST00000382891	NM_133335.3	931	aCg/aTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8460411	8460411	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	165	332	0	ENST00000356435.5:c.3875G>T	p.Arg1292Met	p.R1292M	ENST00000356435		1292	aGg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	148	530	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091797	29091797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	62	586	0	ENST00000328354.6:c.1160C>T	p.Thr387Ile	p.T387I	ENST00000328354	NM_007194.3	387	aCc/aTc																																																																														
ATRX	0	MSKCC	GRCh37	X	76855010	76855010	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	35	297	0	ENST00000373344.5:c.5826C>G	p.Ser1942Arg	p.S1942R	ENST00000373344	NM_000489.3	1942	agC/agG																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	508	583	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	246	627	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
BAP1	0	MSKCC	GRCh37	3	52438542	52438542	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	490	562	0	ENST00000460680.1:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000460680	NM_004656.3	393	Cag/Tag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	44	551	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	61	441	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	82	235	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11958295	11958295	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	32	370	0	ENST00000353533.5:c.205C>T	p.Gln69Ter	p.Q69*	ENST00000353533	NM_003010.3	69	Caa/Taa																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986743	36986743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	11	70	0	ENST00000354822.5:c.946G>A	p.Ala316Thr	p.A316T	ENST00000354822	NM_001079668.2	316	Gcg/Acg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	81	365	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15311619	15311621	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-	rs772632118		P-0018639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	10	64	0	ENST00000263388.2:c.96_98del	p.Leu33del	p.L33del	ENST00000263388	NM_000435.2	32	ctGCTa/cta																																																																														
BRAF	0	MSKCC	GRCh37	7	140453138	140453139	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0018639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	81	410	0	ENST00000288602.6:c.1794_1796dupTAC	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	aca/acTACa																																																																														
ELF3	0	MSKCC	GRCh37	1	201983126	201983127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	94	458	0	ENST00000359651.3:c.976dup	p.Tyr326LeufsTer145	p.Y326Lfs*145	ENST00000359651		325	-/T																																																																														
NBN	0	MSKCC	GRCh37	8	90992961	90992961	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	87	296	0	ENST00000265433.3:c.480+1G>A		p.X160_splice	ENST00000265433	NM_002485.4	160																																																																															
GATA3	0	MSKCC	GRCh37	10	8100402	8100403	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	211	587	1	ENST00000346208.3:c.380dup	p.Pro129AlafsTer174	p.P129Afs*174	ENST00000346208		126	tcc/tCcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	19	474	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168741	56168744	+	frameshift_variant	Frame_Shift_Del	DEL	GAAG	GAAG	-			P-0018640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	166	363	0	ENST00000399503.3:c.1598_1601del	p.Arg533IlefsTer23	p.R533Ifs*23	ENST00000399503	NM_005921.1	532	cGAAGg/cg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155733	56155734	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0018640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	117	282	0	ENST00000399503.3:c.825_826delinsA	p.Pro276GlnfsTer36	p.P276Qfs*36	ENST00000399503	NM_005921.1	275	tcCCca/tcAca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	483	534	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610243	10610243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	286	665	0	ENST00000171111.5:c.467T>C	p.Met156Thr	p.M156T	ENST00000171111	NM_203500.1	156	aTg/aCg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	176	278	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	176	278	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	176	278	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	122	386	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	437	434	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
PTPRS	0	MSKCC	GRCh37	19	5210575	5210575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	183	479	1	ENST00000357368.4:c.5392C>T	p.Arg1798Cys	p.R1798C	ENST00000357368	NM_002850.3	1798	Cgc/Tgc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121311	29121311	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	286	623	0	ENST00000328354.6:c.364G>C	p.Glu122Gln	p.E122Q	ENST00000328354	NM_007194.3	122	Gaa/Caa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982138	93982138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0018643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	130	292	0	ENST00000369303.4:c.1327C>G	p.Pro443Ala	p.P443A	ENST00000369303	NM_004440.3	443	Ccc/Gcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	186	564	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	250	632	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584763	48584763	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	102	565	0	ENST00000342988.3:c.842del	p.Pro281LeufsTer55	p.P281Lfs*55	ENST00000342988	NM_005359.5	281	Cct/ct																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31368203	31368203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	191	561	0	ENST00000328111.2:c.74G>A	p.Gly25Glu	p.G25E	ENST00000328111	NM_006892.3	25	gGg/gAg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71101693	71101693	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	35	208	0	ENST00000318789.4:c.505A>G	p.Lys169Glu	p.K169E	ENST00000318789	NM_032682.5	169	Aaa/Gaa																																																																														
RBM10	0	MSKCC	GRCh37	X	47032564	47032564	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	222	554	0	ENST00000329236.7:c.241del	p.Glu81ArgfsTer4	p.E81Rfs*4	ENST00000329236	NM_001204466.1	80	cGg/cg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0018645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	149	758	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
RET	0	MSKCC	GRCh37	10	43619232	43619232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	151	560	0	ENST00000355710.3:c.2915G>A	p.Arg972Lys	p.R972K	ENST00000355710	NM_020975.4	972	aGg/aAg																																																																														
TET1	0	MSKCC	GRCh37	10	70446287	70446291	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0018645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	119	744	0	ENST00000373644.4:c.5229_5233del	p.Lys1743AsnfsTer25	p.K1743Nfs*25	ENST00000373644	NM_030625.2	1743	AAAAGa/a																																																																														
ARAF	0	MSKCC	GRCh37	X	47426832	47426833	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0018645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	49	266	0	ENST00000377045.4:c.1076+2dup		p.X359_splice	ENST00000377045	NM_001654.4	359																																																																															
SHOC2	0	MSKCC	GRCh37	10	112767362	112767362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	117	413	0	ENST00000369452.4:c.1235A>G	p.Asn412Ser	p.N412S	ENST00000369452	NM_007373.3	412	aAt/aGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911168	32911168	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	255	418	0	ENST00000380152.3:c.2677del	p.Gln893LysfsTer2	p.Q893Kfs*2	ENST00000380152		892	ttC/tt																																																																														
RB1	5925	MSKCC	GRCh37	13	48916840	48916841	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0018647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	200	306	0	ENST00000267163.4:c.371_372del	p.Ile124ArgfsTer6	p.I124Rfs*6	ENST00000267163	NM_000321.2	124	ATa/a																																																																														
CARM1	0	MSKCC	GRCh37	19	11031361	11031361	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	714	589	0	ENST00000327064.4:c.1363del	p.Gln455ArgfsTer15	p.Q455Rfs*15	ENST00000327064	NM_199141.1	454	gCc/gc																																																																														
PAK7	0	MSKCC	GRCh37	20	9538322	9538332	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTAGGAGAG	AGGTAGGAGAG	-			P-0018647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	229	353	0	ENST00000353224.5:c.1666_1676del	p.Leu556SerfsTer2	p.L556Sfs*2	ENST00000353224	NM_177990.2	556	CTCTCCTACCTt/t																																																																														
EPHB1	0	MSKCC	GRCh37	3	134960107	134960107	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	380	438	0	ENST00000398015.3:c.2464G>C	p.Glu822Gln	p.E822Q	ENST00000398015	NM_004441.4	822	Gag/Cag																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138403480	138403480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	131	319	0	ENST00000289153.2:c.2302C>G	p.Leu768Val	p.L768V	ENST00000289153	NM_006219.2	768	Ctc/Gtc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589620	67589640	+	inframe_deletion	In_Frame_Del	DEL	AGAATATGATAGATTATATGA	AGAATATGATAGATTATATGA	-			P-0018647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	72	342	0	ENST00000274335.5:c.1390_1410del	p.Asp464_Tyr470del	p.D464_Y470del	ENST00000274335		461	cgAGAATATGATAGATTATATGAa/cga																																																																														
ROS1	0	MSKCC	GRCh37	6	117645532	117645538	+	frameshift_variant	Frame_Shift_Del	DEL	AACTATA	AACTATA	-			P-0018647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	233	419	0	ENST00000368508.3:c.5598_5604del	p.Ile1866MetfsTer11	p.I1866Mfs*11	ENST00000368508	NM_002944.2	1866	atTATAGTT/at																																																																														
STAG2	0	MSKCC	GRCh37	X	123211880	123211880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	144	470	0	ENST00000218089.9:c.2747C>G	p.Ala916Gly	p.A916G	ENST00000218089	NM_001042749.1	916	gCt/gGt																																																																														
TP53	0	MSKCC	GRCh37	17	7579473	7579477	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGA	GGGGA	AGG			P-0018647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	502	503	0	ENST00000269305.4:c.210_214delinsCCT	p.Pro71LeufsTer77	p.P71Lfs*77	ENST00000269305	NM_001126112.2	70	gcTCCCCcc/gcCCTcc																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870966	12870966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	80	416	0	ENST00000228872.4:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000228872	NM_004064.3	65	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	325	723	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	311	728	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	357	705	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
MSI1	0	MSKCC	GRCh37	12	120800850	120800850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	526	1028	0	ENST00000257552.2:c.398G>T	p.Gly133Val	p.G133V	ENST00000257552	NM_002442.3	133	gGg/gTg																																																																														
RNF43	0	MSKCC	GRCh37	17	56438267	56438268	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0018651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	301	602	0	ENST00000407977.2:c.725_726del	p.Gln242ProfsTer16	p.Q242Pfs*16	ENST00000407977		242	cAG/c																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	10	103	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																																																														
TP53	0	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	155	676	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc																																																																														
IGF2	0	MSKCC	GRCh37	11	2154836	2154836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	166	656	0	ENST00000434045.2:c.385C>A	p.Arg129Ser	p.R129S	ENST00000434045	NM_001127598.1	129	Cgc/Agc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18491385	18491385	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	79	460	0	ENST00000266497.5:c.1298A>C	p.Glu433Ala	p.E433A	ENST00000266497		433	gAa/gCa																																																																														
MGA	0	MSKCC	GRCh37	15	41989108	41989108	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	112	601	0	ENST00000219905.7:c.1900A>T	p.Lys634Ter	p.K634*	ENST00000219905	NM_001164273.1	634	Aag/Tag																																																																														
B2M	0	MSKCC	GRCh37	15	45007496	45007646	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATGGAATTGGGAGAAATCGATGACCAAATGTAAACACTTGGTGCCTGATATAGCTTGACACCAAGTTAGCCCCAAGTGAAATACCCTGGCAATATTAATGTGTCTTTTCCCGATATTCCTCAGGTACTCCAAAGATTCAGGTTTACTCA	AAATGGAATTGGGAGAAATCGATGACCAAATGTAAACACTTGGTGCCTGATATAGCTTGACACCAAGTTAGCCCCAAGTGAAATACCCTGGCAATATTAATGTGTCTTTTCCCGATATTCCTCAGGTACTCCAAAGATTCAGGTTTACTCA	-			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			26	10	24	0	ENST00000558401.1:c.68-125_93del		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
NTRK3	0	MSKCC	GRCh37	15	88670457	88670457	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	83	375	0	ENST00000360948.2:c.1229T>A	p.Phe410Tyr	p.F410Y	ENST00000360948	NM_001012338.2	410	tTt/tAt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934504	9934504	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	100	484	0	ENST00000330684.3:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000330684	NM_001134407.1	551	Gaa/Taa																																																																														
MAPK3	0	MSKCC	GRCh37	16	30128306	30128306	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			633	106	604	2	ENST00000263025.4:c.926G>C	p.Arg309Pro	p.R309P	ENST00000263025	NM_002746.2	309	cGg/cCg																																																																														
CD79B	0	MSKCC	GRCh37	17	62007659	62007659	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	141	514	0	ENST00000392795.3:c.208A>T	p.Ser70Cys	p.S70C	ENST00000392795	NM_001039933.1	70	Agc/Tgc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133787	55133787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			534	141	544	0	ENST00000257290.5:c.1000C>A	p.His334Asn	p.H334N	ENST00000257290	NM_006206.4	334	Cat/Aat																																																																														
FAT1	0	MSKCC	GRCh37	4	187542692	187542692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	123	472	3	ENST00000441802.2:c.5048G>A	p.Gly1683Glu	p.G1683E	ENST00000441802	NM_005245.3	1683	gGg/gAg																																																																														
FAT1	0	MSKCC	GRCh37	4	187629874	187629874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			917	190	690	0	ENST00000441802.2:c.1108G>T	p.Asp370Tyr	p.D370Y	ENST00000441802	NM_005245.3	370	Gat/Tat																																																																														
MDC1	0	MSKCC	GRCh37	6	30668376	30668376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			792	123	579	0	ENST00000376406.3:c.6136T>A	p.Phe2046Ile	p.F2046I	ENST00000376406	NM_014641.2	2046	Ttc/Atc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066636	94066636	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	353	572	1	ENST00000369303.4:c.1123G>T	p.Glu375Ter	p.E375*	ENST00000369303	NM_004440.3	375	Gag/Tag																																																																														
HGF	0	MSKCC	GRCh37	7	81346560	81346560	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			617	171	462	1	ENST00000222390.5:c.1393C>A	p.Pro465Thr	p.P465T	ENST00000222390	NM_000601.4	465	Cct/Act																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38172948	38172948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			791	54	559	1	ENST00000317025.8:c.2101G>T	p.Asp701Tyr	p.D701Y	ENST00000317025	NM_023034.1	701	Gac/Tac																																																																														
TEK	0	MSKCC	GRCh37	9	27192514	27192514	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			826	56	541	0	ENST00000380036.4:c.1517A>C	p.Tyr506Ser	p.Y506S	ENST00000380036	NM_000459.3	506	tAt/tCt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98229656	98229656	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	74	364	0	ENST00000331920.6:c.2302A>G	p.Thr768Ala	p.T768A	ENST00000331920	NM_000264.3	768	Acc/Gcc																																																																														
BTK	0	MSKCC	GRCh37	X	100626618	100626618	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	A			P-0018654-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	140	215	0	ENST00000308731.7:c.309+3G>T		p.X103_splice	ENST00000308731	NM_000061.2	103																																																																															
GATA3	0	MSKCC	GRCh37	10	8115717	8115718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTATG			P-0018655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	370	635	0	ENST00000346208.3:c.1064_1068dup	p.Lys357LeufsTer2	p.K357Lfs*2	ENST00000346208		355	act/aCTATGct																																																																														
CBFB	0	MSKCC	GRCh37	16	67070611	67070612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	286	333	0	ENST00000412916.2:c.238dup	p.Thr80AsnfsTer3	p.T80Nfs*3	ENST00000412916		79	caa/cAaa																																																																														
SDHB	0	MSKCC	GRCh37	1	17380450	17380450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	225	668	2	ENST00000375499.3:c.65G>A	p.Cys22Tyr	p.C22Y	ENST00000375499	NM_003000.2	22	tGc/tAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828359	72828359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	151	527	0	ENST00000268489.5:c.8222C>G	p.Ala2741Gly	p.A2741G	ENST00000268489	NM_006885.3	2741	gCt/gGt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349146	89349146	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			832	349	1055	1	ENST00000301030.4:c.3804del	p.Lys1269SerfsTer49	p.K1269Sfs*49	ENST00000301030	NM_001256183.1	1268	agG/ag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226238	2226243	+	inframe_deletion	In_Frame_Del	DEL	AAGTGG	AAGTGG	-			P-0018659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	319	890	0	ENST00000398665.3:c.3722_3727del	p.Trp1241_Lys1242del	p.W1241_K1242del	ENST00000398665	NM_032482.2	1240	AAGTGG/-																																																																														
ROS1	0	MSKCC	GRCh37	6	117677840	117677840	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			265	135	343	0	ENST00000368508.3:c.4093C>A	p.Leu1365Met	p.L1365M	ENST00000368508	NM_002944.2	1365	Ctg/Atg																																																																														
BRAF	0	MSKCC	GRCh37	7	140624399	140624422	+	inframe_deletion	In_Frame_Del	DEL	GGCCGCGGCGCCGGCGCCGGCGCC	GGCCGCGGCGCCGGCGCCGGCGCC	-			P-0018659-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			213	403	258	0	ENST00000288602.6:c.82_105del	p.Gly28_Ala35del	p.G28_A35del	ENST00000288602	NM_004333.4	28	GGCGCCGGCGCCGGCGCCGCGGCC/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	517	752	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	128	435	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	101	333	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	209	575	0	ENST00000171111.5:c.959G>T	p.Arg320Leu	p.R320L	ENST00000171111	NM_203500.1	320	cGg/cTg																																																																														
PARP1	0	MSKCC	GRCh37	1	226578181	226578181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	94	534	0	ENST00000366794.5:c.547G>A	p.Gly183Ser	p.G183S	ENST00000366794	NM_001618.3	183	Ggc/Agc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114711350	114711350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	81	373	0	ENST00000543371.1:c.365C>T	p.Ser122Leu	p.S122L	ENST00000543371	NM_001198531.1	122	tCg/tTg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942761	44942761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	155	389	0	ENST00000377967.4:c.3341C>T	p.Ser1114Leu	p.S1114L	ENST00000377967	NM_021140.2	1114	tCa/tTa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361152	66361152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	126	381	1	ENST00000273854.3:c.1020G>T	p.Lys340Asn	p.K340N	ENST00000273854	NM_004439.5	340	aaG/aaT																																																																														
FH	0	MSKCC	GRCh37	1	241682982	241682982	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	210	345	0	ENST00000366560.3:c.41T>C	p.Leu14Pro	p.L14P	ENST00000366560	NM_000143.3	14	cTc/cCc																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50484313	50484313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	323	737	0	ENST00000394963.4:c.1073C>G	p.Pro358Arg	p.P358R	ENST00000394963	NM_003076.4	358	cCt/cGt																																																																														
TSHR	0	MSKCC	GRCh37	14	81554344	81554344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	281	756	0	ENST00000298171.2:c.364C>A	p.Leu122Ile	p.L122I	ENST00000298171	NM_000369.2	122	Ctc/Atc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3843423	3843423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	119	436	0	ENST00000262367.5:c.1180C>T	p.His394Tyr	p.H394Y	ENST00000262367	NM_004380.2	394	Cac/Tac																																																																														
ERCC4	0	MSKCC	GRCh37	16	14014188	14014220	+	inframe_deletion	In_Frame_Del	DEL	GCCTGCCTGGTGCTGGTGCTCAACACGCAGCCG	GCCTGCCTGGTGCTGGTGCTCAACACGCAGCCG	-			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	70	336	0	ENST00000311895.7:c.169_201del	p.Cys57_Ala67del	p.C57_A67del	ENST00000311895	NM_005236.2	56	GCCTGCCTGGTGCTGGTGCTCAACACGCAGCCG/-																																																																														
BRIP1	0	MSKCC	GRCh37	17	59853836	59853836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	163	731	0	ENST00000259008.2:c.2023G>A	p.Glu675Lys	p.E675K	ENST00000259008	NM_032043.2	675	Gaa/Aaa																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39573270	39573270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	130	576	0	ENST00000262039.4:c.751G>A	p.Glu251Lys	p.E251K	ENST00000262039	NM_002647.2	251	Gaa/Aaa																																																																														
STK11	0	MSKCC	GRCh37	19	1207059	1207059	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	256	760	1	ENST00000326873.7:c.147C>G	p.Tyr49Ter	p.Y49*	ENST00000326873	NM_000455.4	49	taC/taG																																																																														
CCNE1	0	MSKCC	GRCh37	19	30308346	30308346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	170	762	0	ENST00000262643.3:c.360G>C	p.Met120Ile	p.M120I	ENST00000262643	NM_001238.2	120	atG/atC																																																																														
MSH2	0	MSKCC	GRCh37	2	47705659	47705659	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	129	393	0	ENST00000233146.2:c.2458+1G>A		p.X820_splice	ENST00000233146	NM_000251.2	820																																																																															
SF3B1	0	MSKCC	GRCh37	2	198269824	198269824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	300	685	0	ENST00000335508.6:c.1515G>T	p.Lys505Asn	p.K505N	ENST00000335508	NM_012433.2	505	aaG/aaT																																																																														
CASP8	0	MSKCC	GRCh37	2	202149940	202149940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	184	666	0	ENST00000358485.4:c.1381G>A	p.Gly461Arg	p.G461R	ENST00000358485	NM_001080125.1	461	Ggg/Agg																																																																														
INHA	0	MSKCC	GRCh37	2	220440096	220440096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	193	881	0	ENST00000243786.2:c.949C>T	p.Pro317Ser	p.P317S	ENST00000243786	NM_002191.3	317	Ccc/Tcc																																																																														
EP300	0	MSKCC	GRCh37	22	41556650	41556650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	66	552	0	ENST00000263253.7:c.3595C>G	p.His1199Asp	p.H1199D	ENST00000263253	NM_001429.3	1199	Cat/Gat																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502828	186502828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	170	602	0	ENST00000323963.5:c.286G>C	p.Glu96Gln	p.E96Q	ENST00000323963		96	Gag/Cag																																																																														
IL7R	0	MSKCC	GRCh37	5	35876479	35876479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	163	625	0	ENST00000303115.3:c.1271G>T	p.Gly424Val	p.G424V	ENST00000303115	NM_002185.3	424	gGa/gTa																																																																														
PIM1	0	MSKCC	GRCh37	6	37141754	37141754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	156	667	0	ENST00000373509.5:c.829G>A	p.Asp277Asn	p.D277N	ENST00000373509	NM_002648.3	277	Gat/Aat																																																																														
ROS1	0	MSKCC	GRCh37	6	117642434	117642434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	235	726	0	ENST00000368508.3:c.5765G>T	p.Cys1922Phe	p.C1922F	ENST00000368508	NM_002944.2	1922	tGc/tTc																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519619	137519619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	99	390	0	ENST00000367739.4:c.1019C>T	p.Pro340Leu	p.P340L	ENST00000367739	NM_000416.2	340	cCa/cTa																																																																														
JAK2	0	MSKCC	GRCh37	9	5069158	5069158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	83	663	0	ENST00000381652.3:c.1463C>T	p.Ser488Leu	p.S488L	ENST00000381652	NM_004972.3	488	tCa/tTa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223484	53223485	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0018660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	220	243	0	ENST00000375401.3:c.3874_3875del	p.Ala1292GlnfsTer7	p.A1292Qfs*7	ENST00000375401	NM_004187.3	1292	GCc/c																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0018661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	15452	591	1	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228980	36228980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	147	570	0	ENST00000222270.7:c.7760G>A	p.Arg2587Gln	p.R2587Q	ENST00000222270	NM_014727.1	2587	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578551	7578558	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTACTGT	AGTACTGT	-			P-0018661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	443	877	0	ENST00000269305.4:c.376-4_379delACAGTACT		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
CARM1	0	MSKCC	GRCh37	19	11031530	11031530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2145	253	885	0	ENST00000327064.4:c.1445C>T	p.Ser482Leu	p.S482L	ENST00000327064	NM_199141.1	482	tCa/tTa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928073	178928074	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0018661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	14996	606	3	ENST00000263967.3:c.1351_1352delinsAA	p.Gly451Lys	p.G451K	ENST00000263967	NM_006218.2	451	GGa/AAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486087	8486087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1205	137	609	0	ENST00000356435.5:c.2730G>T	p.Glu910Asp	p.E910D	ENST00000356435		910	gaG/gaT																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018662-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1127	120	682	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	250	472	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	42	481	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
ALK	0	MSKCC	GRCh37	2	29551332	29551332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1275	115	523	1	ENST00000389048.3:c.1298C>T	p.Ser433Phe	p.S433F	ENST00000389048	NM_004304.4	433	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0018667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	254	452	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	67	124	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																														
RAD21	0	MSKCC	GRCh37	8	117878859	117878859	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	271	443	2	ENST00000297338.2:c.110T>C	p.Leu37Ser	p.L37S	ENST00000297338	NM_006265.2	37	tTa/tCa																																																																														
TP53	0	MSKCC	GRCh37	17	7578497	7578499	+	frameshift_variant	Frame_Shift_Del	DEL	GCT	GCT	C			P-0018667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	708	844	0	ENST00000269305.4:c.431_433delinsG	p.Gln144ArgfsTer4	p.Q144Rfs*4	ENST00000269305	NM_001126112.2	144	cAGCtg/cGtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	134	643	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523292	176523292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	187	607	0	ENST00000292408.4:c.1949G>A	p.Arg650His	p.R650H	ENST00000292408	NM_213647.1	650	cGc/cAc																																																																														
CDK12	0	MSKCC	GRCh37	17	37618666	37618666	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	366	734	0	ENST00000447079.4:c.343del	p.Gln115SerfsTer9	p.Q115Sfs*9	ENST00000447079	NM_015083.1	114	caC/ca																																																																														
APC	0	MSKCC	GRCh37	5	112102099	112102099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	61	309	0	ENST00000257430.4:c.212G>A	p.Arg71His	p.R71H	ENST00000257430	NM_000038.5	71	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	37	432	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	109	481	0	ENST00000269305.4:c.706T>G	p.Tyr236Asp	p.Y236D	ENST00000269305	NM_001126112.2	236	Tac/Gac																																																																														
SHOC2	0	MSKCC	GRCh37	10	112767384	112767384	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	95	396	0	ENST00000369452.4:c.1258del	p.Asp420MetfsTer18	p.D420Mfs*18	ENST00000369452	NM_007373.3	419	gaG/ga																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732482	74732482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	184	136	0	ENST00000359995.5:c.427C>T	p.Arg143Cys	p.R143C	ENST00000359995	NM_001195427.1	143	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	21	675	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	57	337	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	21	566	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	124	629	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	29	514	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	53	589	2	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
SMO	0	MSKCC	GRCh37	7	128845623	128845623	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201012381		P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	40	251	0	ENST00000249373.3:c.920C>T	p.Thr307Ile	p.T307I	ENST00000249373	NM_005631.4	307	aCc/aTc																																																																														
SPEN	0	MSKCC	GRCh37	1	16255882	16255883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	48	453	2	ENST00000375759.3:c.3154dup	p.Ile1052AsnfsTer7	p.I1052Nfs*7	ENST00000375759	NM_015001.2	1049	-/A																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	53	702	1	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
SPEN	0	MSKCC	GRCh37	1	16257254	16257254	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	139	647	2	ENST00000375759.3:c.4522del	p.Met1508TrpfsTer39	p.M1508Wfs*39	ENST00000375759	NM_015001.2	1507	Aaa/aa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12013737	12013738	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	27	415	0	ENST00000353533.5:c.681_682del	p.His227GlnfsTer17	p.H227Qfs*17	ENST00000353533	NM_003010.3	227	CAc/c																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248737	212248737	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	20	305	0	ENST00000342788.4:c.3530delA	p.Asn1177MetfsTer27	p.N1177Mfs*27	ENST00000342788	NM_005235.2	1177	aAt/at																																																																														
SRC	0	MSKCC	GRCh37	20	36024634	36024634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	181	816	1	ENST00000358208.4:c.623G>A	p.Arg208His	p.R208H	ENST00000358208		208	cGc/cAc																																																																														
MLH1	0	MSKCC	GRCh37	3	37042545	37042545	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	49	417	1	ENST00000231790.2:c.306+1G>A		p.X102_splice	ENST00000231790	NM_000249.3	102																																																																															
KMT2C	0	MSKCC	GRCh37	7	151849901	151849901	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	72	385	1	ENST00000262189.6:c.12415C>T	p.Arg4139Ter	p.R4139*	ENST00000262189	NM_170606.2	4139	Cga/Tga																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101895016	101895016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	20	241	0	ENST00000374994.4:c.569G>A	p.Gly190Asp	p.G190D	ENST00000374994	NM_004612.2	190	gGc/gAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399216	139399216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	59	621	0	ENST00000277541.6:c.4927G>A	p.Ala1643Thr	p.A1643T	ENST00000277541	NM_017617.3	1643	Gcc/Acc																																																																														
SDHA	0	MSKCC	GRCh37	5	236616	236616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	198	329	0	ENST00000264932.6:c.1334C>T	p.Ser445Leu	p.S445L	ENST00000264932	NM_004168.2	445	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	116	459	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PGR	0	MSKCC	GRCh37	11	100999009	100999009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	81	423	0	ENST00000325455.5:c.793G>A	p.Val265Ile	p.V265I	ENST00000325455	NM_001202474.3	265	Gtc/Atc																																																																														
TSC2	0	MSKCC	GRCh37	16	2136193	2136193	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0018683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	60	269	1	ENST00000219476.3:c.4663-1G>A		p.X1555_splice	ENST00000219476	NM_000548.3	1555																																																																															
TP53	0	MSKCC	GRCh37	17	7578284	7578284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	175	434	0	ENST00000269305.4:c.565G>C	p.Ala189Pro	p.A189P	ENST00000269305	NM_001126112.2	189	Gcc/Ccc																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24129412	24129412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	105	332	0	ENST00000263121.7:c.56T>C	p.Leu19Pro	p.L19P	ENST00000263121	NM_003073.3	19	cTg/cCg																																																																														
APC	0	MSKCC	GRCh37	5	112179446	112179446	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	43	312	0	ENST00000257430.4:c.8155G>T	p.Glu2719Ter	p.E2719*	ENST00000257430	NM_000038.5	2719	Gaa/Taa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50459562	50459562	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	48	242	1	ENST00000331340.3:c.850+1G>A		p.X284_splice	ENST00000331340	NM_006060.4	284																																																																															
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	75	517	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
KDR	0	MSKCC	GRCh37	4	55980345	55980345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	61	482	0	ENST00000263923.4:c.746G>T	p.Arg249Ile	p.R249I	ENST00000263923	NM_002253.2	249	aGa/aTa																																																																														
RHOA	0	MSKCC	GRCh37	3	49405902	49405909	+	frameshift_variant	Frame_Shift_Del	DEL	ACATCGGT	ACATCGGT	-			P-0018684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	50	521	0	ENST00000418115.1:c.229_236del	p.Thr77TyrfsTer11	p.T77Yfs*11	ENST00000418115	NM_001664.2	77	ACCGATGTt/t																																																																														
IRS2	0	MSKCC	GRCh37	13	110434682	110434682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	269	676	4	ENST00000375856.3:c.3719G>A	p.Arg1240His	p.R1240H	ENST00000375856	NM_003749.2	1240	cGc/cAc																																																																														
MEN1	0	MSKCC	GRCh37	11	64575484	64575484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	275	544	0	ENST00000337652.1:c.548C>G	p.Ser183Cys	p.S183C	ENST00000337652	NM_130803.2	183	tCt/tGt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115853	8115854	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0018685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	252	573	0	ENST00000346208.3:c.1200_1201del	p.Met400IlefsTer106	p.M400Ifs*106	ENST00000346208		400	aTG/a																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0018686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	270	611	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0018686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	68	282	0	ENST00000257430.4:c.1409-1G>A		p.X470_splice	ENST00000257430	NM_000038.5	470																																																																															
APC	0	MSKCC	GRCh37	5	112151291	112151291	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	95	226	0	ENST00000257430.4:c.933+1G>A		p.X311_splice	ENST00000257430	NM_000038.5	311																																																																															
CDKN2A	0	MSKCC	GRCh37	9	21971020	21971021	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0018686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	177	388	0	ENST00000304494.5:c.337_338del	p.Leu113AlafsTer6	p.L113Afs*6	ENST00000304494	NM_000077.4	113	CTg/g																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971020	21971021	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0018686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	177	388	0	ENST00000304494.5:c.337_338del	p.Leu113AlafsTer6	p.L113Afs*6	ENST00000304494	NM_000077.4	113	CTg/g																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971020	21971021	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0018686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	177	388	0	ENST00000304494.5:c.337_338del	p.Leu113AlafsTer6	p.L113Afs*6	ENST00000304494	NM_000077.4	113	CTg/g																																																																														
SPEN	0	MSKCC	GRCh37	1	16258943	16258944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1322	182	853	0	ENST00000375759.3:c.6215dup	p.Asn2072LysfsTer51	p.N2072Kfs*51	ENST00000375759	NM_015001.2	2070	gaa/gAaa																																																																														
NUF2	0	MSKCC	GRCh37	1	163325188	163325188	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	70	504	0	ENST00000271452.3:c.1324G>T	p.Glu442Ter	p.E442*	ENST00000271452	NM_145697.2	442	Gag/Tag																																																																														
TET1	0	MSKCC	GRCh37	10	70332801	70332801	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	151	615	0	ENST00000373644.4:c.706A>G	p.Thr236Ala	p.T236A	ENST00000373644	NM_030625.2	236	Acc/Gcc																																																																														
RB1	0	MSKCC	GRCh37	13	49047519	49047519	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	76	305	0	ENST00000267163.4:c.2513C>G	p.Ser838Ter	p.S838*	ENST00000267163	NM_000321.2	838	tCa/tGa																																																																														
DIS3	0	MSKCC	GRCh37	13	73355766	73355766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	115	460	0	ENST00000377767.4:c.205G>T	p.Asp69Tyr	p.D69Y	ENST00000377767	NM_014953.3	69	Gac/Tac																																																																														
TSHR	0	MSKCC	GRCh37	14	81609522	81609522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	86	426	0	ENST00000298171.2:c.1120C>A	p.Gln374Lys	p.Q374K	ENST00000298171	NM_000369.2	374	Cag/Aag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3832871	3832871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	190	405	1	ENST00000262367.5:c.1387G>A	p.Gly463Arg	p.G463R	ENST00000262367	NM_004380.2	463	Ggg/Agg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993922	72993922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	86	508	0	ENST00000268489.5:c.123G>T	p.Gln41His	p.Q41H	ENST00000268489	NM_006885.3	41	caG/caT																																																																														
NF1	0	MSKCC	GRCh37	17	29550507	29550516	+	frameshift_variant	Frame_Shift_Del	DEL	AATGCTTAGT	AATGCTTAGT	-			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	165	412	0	ENST00000358273.4:c.1768_1777del	p.Met590AlafsTer12	p.M590Afs*12	ENST00000358273	NM_001042492.2	589	caAATGCTTAGT/ca																																																																														
MALT1	0	MSKCC	GRCh37	18	56414677	56414677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	72	325	0	ENST00000348428.3:c.2078C>T	p.Ser693Leu	p.S693L	ENST00000348428	NM_006785.3	693	tCa/tTa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214056	36214056	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	193	705	0	ENST00000222270.7:c.2882T>C	p.Met961Thr	p.M961T	ENST00000222270	NM_014727.1	961	aTg/aCg																																																																														
AXL	0	MSKCC	GRCh37	19	41749586	41749586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	117	669	1	ENST00000301178.4:c.1511A>G	p.Tyr504Cys	p.Y504C	ENST00000301178	NM_021913.4	504	tAc/tGc																																																																														
BCL6	0	MSKCC	GRCh37	3	187447165	187447165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	91	472	0	ENST00000232014.4:c.1028C>T	p.Ser343Leu	p.S343L	ENST00000232014	NM_001130845.1	343	tCg/tTg																																																																														
EIF4E	0	MSKCC	GRCh37	4	99809059	99809059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	86	440	0	ENST00000280892.6:c.326G>C	p.Cys109Ser	p.C109S	ENST00000280892	NM_001130678.1	109	tGt/tCt																																																																														
NSD1	0	MSKCC	GRCh37	5	176638344	176638344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	153	699	3	ENST00000439151.2:c.2944G>T	p.Gly982Trp	p.G982W	ENST00000439151	NM_022455.4	982	Ggg/Tgg																																																																														
JAK2	0	MSKCC	GRCh37	9	5069121	5069121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	86	529	0	ENST00000381652.3:c.1426G>T	p.Asp476Tyr	p.D476Y	ENST00000381652	NM_004972.3	476	Gat/Tat																																																																														
CRLF2	0	MSKCC	GRCh37	X	1331451	1331451	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	100	665	1	ENST00000381566.1:c.77C>A	p.Ala26Glu	p.A26E	ENST00000381566		26	gCa/gAa																																																																														
ARAF	0	MSKCC	GRCh37	X	47424658	47424658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	104	579	0	ENST00000377045.4:c.466C>A	p.His156Asn	p.H156N	ENST00000377045	NM_001654.4	156	Cac/Aac																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123480539	123480539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	55	424	0	ENST00000371139.4:c.47G>T	p.Gly16Val	p.G16V	ENST00000371139	NM_001114937.2	16	gGc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	305	390	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	146	636	6	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	206	414	3	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
TSC2	0	MSKCC	GRCh37	16	2131772	2131772	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	100	625	1	ENST00000219476.3:c.3787C>G	p.Pro1263Ala	p.P1263A	ENST00000219476	NM_000548.3	1263	Ccc/Gcc																																																																														
ASXL2	0	MSKCC	GRCh37	2	26022347	26022347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	86	535	0	ENST00000435504.4:c.310G>A	p.Gly104Ser	p.G104S	ENST00000435504		104	Ggt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	263	568	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087936	27087936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	122	591	2	ENST00000324856.7:c.2223G>T	p.Met741Ile	p.M741I	ENST00000324856	NM_006015.4	741	atG/atT																																																																														
FH	0	MSKCC	GRCh37	1	241667504	241667504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	80	294	0	ENST00000366560.3:c.946G>A	p.Ala316Thr	p.A316T	ENST00000366560	NM_000143.3	316	Gct/Act																																																																														
ATM	0	MSKCC	GRCh37	11	108141839	108141839	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	97	459	0	ENST00000278616.4:c.2887A>G	p.Met963Val	p.M963V	ENST00000278616	NM_000051.3	963	Atg/Gtg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351048	89351054	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTTTA	TGTTTTA	-			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	74	577	0	ENST00000301030.4:c.1896_1902del	p.His632GlnfsTer19	p.H632Qfs*19	ENST00000301030	NM_001256183.1	632	caTAAAACA/ca																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7989414	7989414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	62	597	1	ENST00000319144.4:c.272C>A	p.Ala91Asp	p.A91D	ENST00000319144	NM_001139.2	91	gCc/gAc																																																																														
DAXX	0	MSKCC	GRCh37	6	33287239	33287239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	66	455	0	ENST00000374542.5:c.1858C>T	p.His620Tyr	p.H620Y	ENST00000374542	NM_001141970.1	620	Cac/Tac																																																																														
RBM10	0	MSKCC	GRCh37	X	47034479	47034479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	45	582	0	ENST00000329236.7:c.333G>C	p.Met111Ile	p.M111I	ENST00000329236	NM_001204466.1	111	atG/atC																																																																														
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	154	663	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
DDR2	0	MSKCC	GRCh37	1	162724560	162724560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	29	411	0	ENST00000367921.3:c.332G>A	p.Gly111Asp	p.G111D	ENST00000367921	NM_006182.2	111	gGc/gAc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095680	178095680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	39	348	0	ENST00000397062.3:c.1651C>T	p.His551Tyr	p.H551Y	ENST00000397062	NM_006164.4	551	Cac/Tac																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851815	134851815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	51	631	0	ENST00000398015.3:c.1221G>T	p.Gln407His	p.Q407H	ENST00000398015	NM_004441.4	407	caG/caT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106097	27106097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	23	436	2	ENST00000324856.7:c.5708C>T	p.Pro1903Leu	p.P1903L	ENST00000324856	NM_006015.4	1903	cCa/cTa																																																																														
CSF3R	0	MSKCC	GRCh37	1	36941167	36941167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	20	453	1	ENST00000361632.4:c.172G>A	p.Glu58Lys	p.E58K	ENST00000361632		58	Gag/Aag																																																																														
NEGR1	0	MSKCC	GRCh37	1	72400918	72400918	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	33	465	1	ENST00000357731.5:c.253T>A	p.Trp85Arg	p.W85R	ENST00000357731	NM_173808.2	85	Tgg/Agg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156844801	156844801	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	22	441	0	ENST00000524377.1:c.1354+1G>T		p.X452_splice	ENST00000524377	NM_002529.3	452																																																																															
SMYD3	0	MSKCC	GRCh37	1	246490507	246490507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	25	430	0	ENST00000388985.4:c.527C>T	p.Ala176Val	p.A176V	ENST00000388985		176	gCa/gTa																																																																														
TET1	0	MSKCC	GRCh37	10	70406258	70406258	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	52	653	1	ENST00000373644.4:c.3772G>T	p.Glu1258Ter	p.E1258*	ENST00000373644	NM_030625.2	1258	Gaa/Taa																																																																														
PTEN	0	MSKCC	GRCh37	10	89624290	89624290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	175	470	2	ENST00000371953.3:c.64G>T	p.Asp22Tyr	p.D22Y	ENST00000371953	NM_000314.4	22	Gac/Tac																																																																														
FGFR2	0	MSKCC	GRCh37	10	123324988	123324988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	40	466	0	ENST00000358487.5:c.340G>T	p.Asp114Tyr	p.D114Y	ENST00000358487	NM_000141.4	114	Gac/Tac																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64132784	64132784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	194	470	0	ENST00000334205.4:c.918G>T	p.Trp306Cys	p.W306C	ENST00000334205	NM_003942.2	306	tgG/tgT																																																																														
FGF19	0	MSKCC	GRCh37	11	69514085	69514085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	288	566	0	ENST00000294312.3:c.596C>A	p.Pro199Gln	p.P199Q	ENST00000294312	NM_005117.2	199	cCa/cAa																																																																														
ATM	0	MSKCC	GRCh37	11	108170456	108170456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	98	351	0	ENST00000278616.4:c.5021G>T	p.Cys1674Phe	p.C1674F	ENST00000278616	NM_000051.3	1674	tGc/tTc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374117	118374117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	213	430	0	ENST00000534358.1:c.7510C>G	p.Pro2504Ala	p.P2504A	ENST00000534358	NM_005933.3	2504	Cca/Gca																																																																														
CBL	0	MSKCC	GRCh37	11	119142480	119142480	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	175	587	0	ENST00000264033.4:c.479A>T	p.His160Leu	p.H160L	ENST00000264033	NM_005188.3	160	cAc/cTc																																																																														
ETV6	0	MSKCC	GRCh37	12	12022368	12022368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	297	659	3	ENST00000396373.4:c.475del	p.Gln159ArgfsTer50	p.Q159Rfs*50	ENST00000396373	NM_001987.4	158	gtC/gt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18524114	18524114	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	11	239	1	ENST00000266497.5:c.1626G>T	p.Arg542Ser	p.R542S	ENST00000266497		542	agG/agT																																																																														
RECQL	0	MSKCC	GRCh37	12	21644567	21644567	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	80	487	0	ENST00000421138.2:c.100G>T	p.Glu34Ter	p.E34*	ENST00000421138		34	Gag/Tag																																																																														
MSI1	0	MSKCC	GRCh37	12	120785255	120785255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	87	472	0	ENST00000257552.2:c.853G>T	p.Gly285Trp	p.G285W	ENST00000257552	NM_002442.3	285	Ggg/Tgg																																																																														
LATS2	0	MSKCC	GRCh37	13	21619822	21619822	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	34	230	0	ENST00000382592.4:c.342+2T>A		p.X114_splice	ENST00000382592	NM_014572.2	114																																																																															
FLT1	0	MSKCC	GRCh37	13	29008359	29008359	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	11	179	0	ENST00000282397.4:c.514-2A>T		p.X172_splice	ENST00000282397	NM_002019.4	172																																																																															
BRCA2	0	MSKCC	GRCh37	13	32929017	32929017	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	16	580	4	ENST00000380152.3:c.7027G>T	p.Glu2343Ter	p.E2343*	ENST00000380152		2343	Gag/Tag																																																																														
PRKD1	0	MSKCC	GRCh37	14	30068985	30068985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	26	668	0	ENST00000331968.5:c.1944G>T	p.Met648Ile	p.M648I	ENST00000331968	NM_002742.2	648	atG/atT																																																																														
PRKD1	0	MSKCC	GRCh37	14	30135354	30135354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	53	526	0	ENST00000331968.5:c.464G>C	p.Arg155Thr	p.R155T	ENST00000331968	NM_002742.2	155	aGa/aCa																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988498	36988498	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	105	705	0	ENST00000354822.5:c.155A>C	p.Glu52Ala	p.E52A	ENST00000354822	NM_001079668.2	52	gAa/gCa																																																																														
DICER1	0	MSKCC	GRCh37	14	95590564	95590564	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	31	415	0	ENST00000343455.3:c.1345G>T	p.Glu449Ter	p.E449*	ENST00000343455	NM_177438.2	449	Gaa/Taa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678594	88678594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	26	301	0	ENST00000360948.2:c.942G>T	p.Glu314Asp	p.E314D	ENST00000360948	NM_001012338.2	314	gaG/gaT																																																																														
NTRK3	0	MSKCC	GRCh37	15	88679770	88679770	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	21	471	2	ENST00000360948.2:c.693C>A	p.Cys231Ter	p.C231*	ENST00000360948	NM_001012338.2	231	tgC/tgA																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680764	88680764	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	53	586	0	ENST00000360948.2:c.493A>T	p.Ser165Cys	p.S165C	ENST00000360948	NM_001012338.2	165	Agc/Tgc																																																																														
BLM	0	MSKCC	GRCh37	15	91292788	91292788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	38	563	1	ENST00000355112.3:c.290A>T	p.Gln97Leu	p.Q97L	ENST00000355112	NM_000057.2	97	cAg/cTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3828059	3828059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	72	530	0	ENST00000262367.5:c.2066G>T	p.Gly689Val	p.G689V	ENST00000262367	NM_004380.2	689	gGg/gTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858433	9858433	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	22	361	0	ENST00000330684.3:c.2968G>T	p.Glu990Ter	p.E990*	ENST00000330684	NM_001134407.1	990	Gag/Tag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993588	72993588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	80	441	0	ENST00000268489.5:c.457G>T	p.Gly153Cys	p.G153C	ENST00000268489	NM_006885.3	153	Ggc/Tgc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59770869	59770869	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199831248		P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	21	469	0	ENST00000259008.2:c.2497A>G	p.Ile833Val	p.I833V	ENST00000259008	NM_032043.2	833	Att/Gtt																																																																														
H3F3B	0	MSKCC	GRCh37	17	73775034	73775034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	50	334	0	ENST00000254810.4:c.139G>T	p.Val47Leu	p.V47L	ENST00000254810	NM_005324.3	47	Gtg/Ttg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78914380	78914380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	53	482	1	ENST00000306801.3:c.3004G>T	p.Ala1002Ser	p.A1002S	ENST00000306801	NM_020761.2	1002	Gcc/Tcc																																																																														
YES1	0	MSKCC	GRCh37	18	756587	756587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	80	539	0	ENST00000314574.4:c.241G>T	p.Val81Leu	p.V81L	ENST00000314574	NM_005433.3	81	Gtg/Ttg																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39629506	39629506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	31	461	1	ENST00000262039.4:c.2200G>T	p.Val734Leu	p.V734L	ENST00000262039	NM_002647.2	734	Gtg/Ttg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291956	15291956	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	72	647	0	ENST00000263388.2:c.2810G>T	p.Gly937Val	p.G937V	ENST00000263388	NM_000435.2	937	gGg/gTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213348	36213348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	38	654	1	ENST00000222270.7:c.2545G>T	p.Val849Leu	p.V849L	ENST00000222270	NM_014727.1	849	Gtg/Ttg																																																																														
POLD1	0	MSKCC	GRCh37	19	50918141	50918141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	46	675	1	ENST00000440232.2:c.2458G>T	p.Ala820Ser	p.A820S	ENST00000440232	NM_002691.3	820	Gcc/Tcc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470534	25470534	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	72	653	0	ENST00000264709.3:c.940T>G	p.Trp314Gly	p.W314G	ENST00000264709	NM_175629.2	314	Tgg/Ggg																																																																														
ALK	0	MSKCC	GRCh37	2	29497991	29497991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	15	422	0	ENST00000389048.3:c.2015G>T	p.Arg672Ile	p.R672I	ENST00000389048	NM_004304.4	672	aGa/aTa																																																																														
SOS1	0	MSKCC	GRCh37	2	39213383	39213383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	35	539	0	ENST00000402219.2:c.3584G>T	p.Arg1195Leu	p.R1195L	ENST00000402219	NM_005633.3	1195	cGa/cTa																																																																														
MSH2	0	MSKCC	GRCh37	2	47630442	47630442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	45	533	0	ENST00000233146.2:c.112G>C	p.Asp38His	p.D38H	ENST00000233146	NM_000251.2	38	Gac/Cac																																																																														
IDH1	0	MSKCC	GRCh37	2	209116253	209116253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	32	449	0	ENST00000345146.2:c.23G>T	p.Gly8Val	p.G8V	ENST00000345146	NM_005896.2	8	gGt/gTt																																																																														
BARD1	0	MSKCC	GRCh37	2	215593633	215593633	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	14	326	0	ENST00000260947.4:c.2101C>T	p.Gln701Ter	p.Q701*	ENST00000260947	NM_000465.2	701	Cag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790012	40790012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	55	369	1	ENST00000373198.4:c.2719G>T	p.Gly907Trp	p.G907W	ENST00000373198	NM_133170.3	907	Ggg/Tgg																																																																														
NF2	0	MSKCC	GRCh37	22	30000075	30000075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	142	519	2	ENST00000338641.4:c.88G>A	p.Asp30Asn	p.D30N	ENST00000338641	NM_000268.3	30	Gac/Aac																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138413743	138413743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	29	372	0	ENST00000289153.2:c.1777G>A	p.Ala593Thr	p.A593T	ENST00000289153	NM_006219.2	593	Gcg/Acg																																																																														
TP63	0	MSKCC	GRCh37	3	189584506	189584506	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	49	412	0	ENST00000264731.3:c.802G>T	p.Glu268Ter	p.E268*	ENST00000264731	NM_003722.4	268	Gag/Tag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902396	1902396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	21	502	0	ENST00000382891.5:c.15C>G	p.Ile5Met	p.I5M	ENST00000382891	NM_133335.3	5	atC/atG																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133459	55133459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	19	473	0	ENST00000257290.5:c.763G>C	p.Gly255Arg	p.G255R	ENST00000257290	NM_006206.4	255	Ggc/Cgc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55161422	55161422	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	28	429	0	ENST00000257290.5:c.3253G>T	p.Glu1085Ter	p.E1085*	ENST00000257290	NM_006206.4	1085	Gaa/Taa																																																																														
KIT	0	MSKCC	GRCh37	4	55561894	55561894	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	24	284	0	ENST00000288135.5:c.284A>G	p.Tyr95Cys	p.Y95C	ENST00000288135	NM_000222.2	95	tAc/tGc																																																																														
FAT1	0	MSKCC	GRCh37	4	187521440	187521440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	48	393	0	ENST00000441802.2:c.11715G>T	p.Gln3905His	p.Q3905H	ENST00000441802	NM_005245.3	3905	caG/caT																																																																														
SDHA	0	MSKCC	GRCh37	5	235339	235339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	52	585	2	ENST00000264932.6:c.1145G>T	p.Gly382Val	p.G382V	ENST00000264932	NM_004168.2	382	gGc/gTc																																																																														
PLK2	0	MSKCC	GRCh37	5	57754277	57754277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	22	436	1	ENST00000274289.3:c.574G>A	p.Gly192Arg	p.G192R	ENST00000274289	NM_006622.3	192	Gga/Aga																																																																														
NPM1	0	MSKCC	GRCh37	5	170834711	170834711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	53	370	0	ENST00000296930.5:c.779C>G	p.Ser260Cys	p.S260C	ENST00000296930	NM_002520.6	260	tCt/tGt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176518737	176518737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	241	581	0	ENST00000292408.4:c.655C>A	p.Arg219Ser	p.R219S	ENST00000292408	NM_213647.1	219	Cgc/Agc																																																																														
FLT4	0	MSKCC	GRCh37	5	180039516	180039516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	185	699	0	ENST00000261937.6:c.3527G>C	p.Arg1176Thr	p.R1176T	ENST00000261937	NM_182925.4	1176	aGg/aCg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528372	157528373	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	74	494	2	ENST00000346085.5:c.6097_6098delinsTT	p.Gly2033Leu	p.G2033L	ENST00000346085	NM_020732.3	2033	GGg/TTg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50444338	50444338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	91	251	0	ENST00000331340.3:c.268G>A	p.Glu90Lys	p.E90K	ENST00000331340	NM_006060.4	90	Gag/Aag																																																																														
IKZF1	0	MSKCC	GRCh37	7	50459468	50459468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	62	343	0	ENST00000331340.3:c.757C>A	p.Leu253Met	p.L253M	ENST00000331340	NM_006060.4	253	Ctg/Atg																																																																														
XRCC2	0	MSKCC	GRCh37	7	152346277	152346277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	17	498	0	ENST00000359321.1:c.293A>G	p.His98Arg	p.H98R	ENST00000359321	NM_005431.1	98	cAc/cGc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372233	55372233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	56	366	0	ENST00000297316.4:c.923G>C	p.Gly308Ala	p.G308A	ENST00000297316	NM_022454.3	308	gGg/gCg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8376672	8376672	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	23	514	0	ENST00000356435.5:c.4441C>T	p.Gln1481Ter	p.Q1481*	ENST00000356435		1481	Caa/Taa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	37	386	0	ENST00000304494.5:c.248A>T	p.His83Leu	p.H83L	ENST00000304494	NM_000077.4	83	cAc/cTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	37	386	0	ENST00000304494.5:c.248A>T	p.His83Leu	p.H83L	ENST00000304494	NM_000077.4	83	cAc/cTc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98238339	98238339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	19	282	0	ENST00000331920.6:c.1705G>T	p.Ala569Ser	p.A569S	ENST00000331920	NM_000264.3	569	Gct/Tct																																																																														
RBM10	0	MSKCC	GRCh37	X	47045696	47045697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	81	313	0	ENST00000329236.7:c.2344_2345dup	p.Asn782LysfsTer27	p.N782Kfs*27	ENST00000329236	NM_001204466.1	781	-/AA																																																																														
BTK	0	MSKCC	GRCh37	X	100614281	100614281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	64	231	0	ENST00000308731.7:c.894G>C	p.Glu298Asp	p.E298D	ENST00000308731	NM_000061.2	298	gaG/gaC																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123499609	123499609	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0018693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	29	248	0	ENST00000371139.4:c.138-2A>T		p.X46_splice	ENST00000371139	NM_001114937.2	46																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	26	240	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	15	114	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	101	488	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604653	48604653	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	21	230	0	ENST00000342988.3:c.1475T>G	p.Val492Gly	p.V492G	ENST00000342988	NM_005359.5	492	gTt/gGt																																																																														
TP53	0	MSKCC	GRCh37	17	7579557	7579557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	79	477	0	ENST00000269305.4:c.130del	p.Met44CysfsTer79	p.M44Cfs*79	ENST00000269305	NM_001126112.2	44	Atg/tg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	49	571	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577555	7577555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	29	434	0	ENST00000269305.4:c.726C>G	p.Cys242Trp	p.C242W	ENST00000269305	NM_001126112.2	242	tgC/tgG																																																																														
CDH1	0	MSKCC	GRCh37	16	68845655	68845655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	75	624	1	ENST00000261769.5:c.901G>A	p.Ala301Thr	p.A301T	ENST00000261769	NM_004360.3	301	Gct/Act																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971153	21971157	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCG	CCGCG	-			P-0018700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	38	303	0	ENST00000304494.5:c.201_205del	p.Glu69GlnfsTer49	p.E69Qfs*49	ENST00000304494	NM_000077.4	67	ggCGCGGag/ggag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971153	21971157	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCG	CCGCG	-			P-0018700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	38	303	0	ENST00000304494.5:c.201_205del	p.Glu69GlnfsTer49	p.E69Qfs*49	ENST00000304494	NM_000077.4	67	ggCGCGGag/ggag																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971153	21971157	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCG	CCGCG	-			P-0018700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	38	303	0	ENST00000304494.5:c.201_205del	p.Glu69GlnfsTer49	p.E69Qfs*49	ENST00000304494	NM_000077.4	67	ggCGCGGag/ggag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	79	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0018701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	73	234	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
AMER1	0	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	84	290	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0018701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	64	242	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
BRAF	0	MSKCC	GRCh37	7	140501260	140501260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	120	338	0	ENST00000288602.6:c.812G>A	p.Arg271His	p.R271H	ENST00000288602	NM_004333.4	271	cGt/cAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692920	89692921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	91	363	0	ENST00000371953.3:c.405dupA	p.Cys136MetfsTer44	p.C136Mfs*44	ENST00000371953	NM_000314.4	135	ata/atAa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573485	48573485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	37	210	0	ENST00000342988.3:c.69G>T	p.Leu23Phe	p.L23F	ENST00000342988	NM_005359.5	23	ttG/ttT																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	241	463	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0018705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	156	630	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0018705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	68	357	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
RET	0	MSKCC	GRCh37	10	43597883	43597883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	89	622	1	ENST00000355710.3:c.431G>A	p.Arg144His	p.R144H	ENST00000355710	NM_020975.4	144	cGc/cAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76776910	76776910	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	100	575	0	ENST00000373344.5:c.7042C>T	p.Gln2348Ter	p.Q2348*	ENST00000373344	NM_000489.3	2348	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	205	570	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	204	431	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877349	40877349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	139	358	0	ENST00000373198.4:c.2347G>A	p.Val783Met	p.V783M	ENST00000373198	NM_133170.3	783	Gtg/Atg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643348	52643348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	203	541	1	ENST00000394830.3:c.2548C>T	p.Arg850Ter	p.R850*	ENST00000394830	NM_018313.4	850	Cga/Tga																																																																														
LATS1	0	MSKCC	GRCh37	6	150001317	150001317	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	185	641	0	ENST00000253339.5:c.2287G>T	p.Glu763Ter	p.E763*	ENST00000253339		763	Gaa/Taa																																																																														
JAK2	0	MSKCC	GRCh37	9	5090491	5090491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	80	478	0	ENST00000381652.3:c.2807G>A	p.Ser936Asn	p.S936N	ENST00000381652	NM_004972.3	936	aGt/aAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	19	546	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	19	379	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272302	15272302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	22	584	1	ENST00000263388.2:c.6137C>T	p.Pro2046Leu	p.P2046L	ENST00000263388	NM_000435.2	2046	cCa/cTa																																																																														
RASA1	0	MSKCC	GRCh37	5	86672758	86672758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	87	298	0	ENST00000274376.6:c.2245C>T	p.Arg749Ter	p.R749*	ENST00000274376	NM_002890.2	749	Cga/Tga																																																																														
PLCG2	0	MSKCC	GRCh37	16	81990399	81990399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199530350		P-0018710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	198	603	0	ENST00000359376.3:c.3670C>T	p.Arg1224Cys	p.R1224C	ENST00000359376	NM_002661.3	1224	Cgc/Tgc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56180653	56180653	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0018710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	95	261	0	ENST00000399503.3:c.3982G>A	p.Gly1328Arg	p.G1328R	ENST00000399503	NM_005921.1	1328	Ggg/Agg																																																																														
BAP1	0	MSKCC	GRCh37	3	52437912	52437912	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0018713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	182	767	0	ENST00000460680.1:c.1251-2A>T		p.X417_splice	ENST00000460680	NM_004656.3	417																																																																															
MITF	0	MSKCC	GRCh37	3	69986985	69986985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	244	652	0	ENST00000352241.4:c.367C>T	p.Leu123Phe	p.L123F	ENST00000352241	NM_198159.2	123	Ctc/Ttc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	212	304	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	90	192	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246472	105246472	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	179	408	0	ENST00000349310.3:c.128A>G	p.Gln43Arg	p.Q43R	ENST00000349310	NM_001014432.1	43	cAg/cGg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210432	36210432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	158	368	2	ENST00000222270.7:c.425G>A	p.Arg142Gln	p.R142Q	ENST00000222270	NM_014727.1	142	cGa/cAa																																																																														
POLE	0	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	34	548	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692818	89692818	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	9	221	0	ENST00000371953.3:c.302T>G	p.Ile101Ser	p.I101S	ENST00000371953	NM_000314.4	101	aTc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	194	453	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	100	460	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	95	401	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
CTCF	0	MSKCC	GRCh37	16	67654718	67654718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	96	389	0	ENST00000264010.4:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000264010	NM_006565.3	402	tCa/tTa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177010	56177011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	96	293	0	ENST00000399503.3:c.2281dup	p.Ile761AsnfsTer3	p.I761Nfs*3	ENST00000399503	NM_005921.1	760	-/A																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177907	56177908	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0018726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	143	414	0	ENST00000399503.3:c.2882_2883dup	p.Pro962AspfsTer7	p.P962Dfs*7	ENST00000399503	NM_005921.1	960	-/AG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0018727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	158	402	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89624269	89624269	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	274	274	1	ENST00000371953.3:c.43A>T	p.Arg15Ter	p.R15*	ENST00000371953	NM_000314.4	15	Aga/Tga																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554175	63554175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	183	442	0	ENST00000307078.5:c.564G>T	p.Gln188His	p.Q188H	ENST00000307078	NM_004655.3	188	caG/caT																																																																														
TP53	0	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	199	468	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	204	410	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
ATM	0	MSKCC	GRCh37	11	108115727	108115727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	82	354	0	ENST00000278616.4:c.875C>T	p.Pro292Leu	p.P292L	ENST00000278616	NM_000051.3	292	cCg/cTg																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699363	117699363	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	166	486	0	ENST00000369458.3:c.278A>T	p.Gln93Leu	p.Q93L	ENST00000369458	NM_024626.3	93	cAg/cTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	145	347	0	ENST00000245479.2:c.340G>A	p.Val114Met	p.V114M	ENST00000245479	NM_000346.3	114	Gtg/Atg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198265495	198265495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	124	622	1	ENST00000335508.6:c.2662C>T	p.Leu888Phe	p.L888F	ENST00000335508	NM_012433.2	888	Ctt/Ttt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52584581	52584581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	128	499	0	ENST00000394830.3:c.4432G>T	p.Val1478Phe	p.V1478F	ENST00000394830	NM_018313.4	1478	Gtc/Ttc																																																																														
ROS1	0	MSKCC	GRCh37	6	117638326	117638326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	89	486	2	ENST00000368508.3:c.6115C>T	p.Arg2039Cys	p.R2039C	ENST00000368508	NM_002944.2	2039	Cgt/Tgt																																																																														
MYC	0	MSKCC	GRCh37	8	128752729	128752729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	178	289	0	ENST00000377970.2:c.890C>T	p.Pro297Leu	p.P297L	ENST00000377970	NM_002467.4	297	cCt/cTt																																																																														
IRS2	0	MSKCC	GRCh37	13	110435357	110435357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	95	442	1	ENST00000375856.3:c.3044C>T	p.Pro1015Leu	p.P1015L	ENST00000375856	NM_003749.2	1015	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577026	7577026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	679	588	2	ENST00000269305.4:c.912del	p.Lys305SerfsTer40	p.K305Sfs*40	ENST00000269305	NM_001126112.2	304	acT/ac																																																																														
BCL2L1	0	MSKCC	GRCh37	20	30253798	30253798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1435	199	578	1	ENST00000307677.4:c.656C>A	p.Thr219Asn	p.T219N	ENST00000307677	NM_138578.1	219	aCt/aAt																																																																														
CDK12	0	MSKCC	GRCh37	17	37619057	37619057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	93	643	0	ENST00000447079.4:c.733G>A	p.Asp245Asn	p.D245N	ENST00000447079	NM_015083.1	245	Gat/Aat																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602748	10602748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	894	655	0	ENST00000171111.5:c.830C>T	p.Thr277Met	p.T277M	ENST00000171111	NM_203500.1	277	aCg/aTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16261910	16261910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	185	493	0	ENST00000375759.3:c.9175G>A	p.Ala3059Thr	p.A3059T	ENST00000375759	NM_015001.2	3059	Gct/Act																																																																														
ELF3	0	MSKCC	GRCh37	1	201982336	201982336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2294	299	696	1	ENST00000359651.3:c.715G>T	p.Asp239Tyr	p.D239Y	ENST00000359651		239	Gat/Tat																																																																														
NTRK3	0	MSKCC	GRCh37	15	88423505	88423505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	64	539	0	ENST00000360948.2:c.2330C>T	p.Thr777Met	p.T777M	ENST00000360948	NM_001012338.2	777	aCg/aTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3808896	3808896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	188	541	1	ENST00000262367.5:c.3328C>A	p.Pro1110Thr	p.P1110T	ENST00000262367	NM_004380.2	1110	Cct/Act																																																																														
TP53	0	MSKCC	GRCh37	17	7572996	7572996	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	109	331	0	ENST00000269305.4:c.1113del	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	371	tcC/tc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11924223	11924225	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	10	9	0	ENST00000353533.5:c.31_33del	p.Gly11del	p.G11del	ENST00000353533	NM_003010.3	7	aGCGgc/agc																																																																														
NF1	0	MSKCC	GRCh37	17	29667556	29667556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	189	550	3	ENST00000358273.4:c.6955G>T	p.Ala2319Ser	p.A2319S	ENST00000358273	NM_001042492.2	2319	Gct/Tct																																																																														
STK11	0	MSKCC	GRCh37	19	1207153	1207153	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	641	759	1	ENST00000326873.7:c.241A>T	p.Lys81Ter	p.K81*	ENST00000326873	NM_000455.4	81	Aag/Tag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251629	212251629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	118	398	1	ENST00000342788.4:c.3430G>A	p.Glu1144Lys	p.E1144K	ENST00000342788	NM_005235.2	1144	Gag/Aag																																																																														
RAC2	0	MSKCC	GRCh37	22	37622802	37622802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1764	392	693	0	ENST00000249071.6:c.490G>T	p.Gly164Cys	p.G164C	ENST00000249071	NM_002872.4	164	Ggc/Tgc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806194	1806194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2046	421	735	0	ENST00000260795.2:c.1213G>C	p.Gly405Arg	p.G405R	ENST00000260795		405	Ggc/Cgc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143094936	143094936	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	33	434	0	ENST00000262992.4:c.1208C>A	p.Ser403Ter	p.S403*	ENST00000262992	NM_001101669.1	403	tCa/tAa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157521851	157521851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	163	422	0	ENST00000346085.5:c.4123C>T	p.His1375Tyr	p.H1375Y	ENST00000346085	NM_020732.3	1375	Cat/Tat																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945627	151945627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	20	518	0	ENST00000262189.6:c.1892C>T	p.Ser631Phe	p.S631F	ENST00000262189	NM_170606.2	631	tCt/tTt																																																																														
ATRX	0	MSKCC	GRCh37	X	76907816	76907816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	13	190	0	ENST00000373344.5:c.4345A>G	p.Lys1449Glu	p.K1449E	ENST00000373344	NM_000489.3	1449	Aaa/Gaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89711877	89711892	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AGTAACTATTCCCAGT	AGTAACTATTCCCAGT	-			P-0018757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	84	398	0	ENST00000371953.3:c.495_510del	p.Val166ArgfsTer12	p.V166Rfs*12	ENST00000371953	NM_000314.4	165	ggAGTAACTATTCCCAGT/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0018757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	109	460	0	ENST00000269305.4:c.375+2T>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
CASP8	0	MSKCC	GRCh37	2	202137644	202137644	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	73	446	0	ENST00000358485.4:c.751A>T	p.Ser251Cys	p.S251C	ENST00000358485	NM_001080125.1	251	Agt/Tgt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	883	618	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0018759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	177	311	1				ENST00000310581	NM_198253.2																																																																																
AR	0	MSKCC	GRCh37	X	66931477	66931477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	659	327	0	ENST00000374690.3:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000374690	NM_000044.3	707	Gaa/Aaa																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074228	8074228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	256	498	0	ENST00000377482.5:c.431C>T	p.Pro144Leu	p.P144L	ENST00000377482	NM_018948.3	144	cCt/cTt																																																																														
POLE	0	MSKCC	GRCh37	12	133201519	133201519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	753	705	0	ENST00000320574.5:c.6719G>A	p.Gly2240Glu	p.G2240E	ENST00000320574	NM_006231.2	2240	gGa/gAa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911010	32911010	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	588	667	0	ENST00000380152.3:c.2518A>G	p.Met840Val	p.M840V	ENST00000380152		840	Atg/Gtg																																																																														
ERCC5	0	MSKCC	GRCh37	13	103527676	103527676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	381	391	0	ENST00000355739.4:c.2984C>T	p.Ser995Phe	p.S995F	ENST00000355739	NM_000123.3	995	tCc/tTc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43738713	43738713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	644	581	1	ENST00000382044.4:c.2912C>T	p.Pro971Leu	p.P971L	ENST00000382044	NM_001141980.1	971	cCc/cTc																																																																														
NF1	0	MSKCC	GRCh37	17	29490346	29490346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	673	588	0	ENST00000358273.4:c.431C>T	p.Ser144Phe	p.S144F	ENST00000358273	NM_001042492.2	144	tCt/tTt																																																																														
ASXL2	0	MSKCC	GRCh37	2	25972854	25972854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	260	412	0	ENST00000435504.4:c.1571C>T	p.Ser524Leu	p.S524L	ENST00000435504		524	tCg/tTg																																																																														
HGF	0	MSKCC	GRCh37	7	81350130	81350130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	281	580	0	ENST00000222390.5:c.1202G>A	p.Gly401Asp	p.G401D	ENST00000222390	NM_000601.4	401	gGc/gAc																																																																														
PREX2	0	MSKCC	GRCh37	8	68993041	68993041	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	301	551	0	ENST00000288368.4:c.1846A>T	p.Ile616Leu	p.I616L	ENST00000288368	NM_024870.2	616	Ata/Tta																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	213	566	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18446899	18446899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	166	426	1	ENST00000266497.5:c.987del	p.Asp331IlefsTer4	p.D331Ifs*4	ENST00000266497		328	ctC/ct																																																																														
ARID2	0	MSKCC	GRCh37	12	46246158	46246158	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	160	382	0	ENST00000334344.6:c.4252G>T	p.Gly1418Ter	p.G1418*	ENST00000334344	NM_152641.2	1418	Gga/Tga																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279975	18279975	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	244	505	0	ENST00000222254.8:c.2058C>G	p.Tyr686Ter	p.Y686*	ENST00000222254	NM_005027.3	686	taC/taG																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944586	40944586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	169	409	0	ENST00000373198.4:c.1916C>A	p.Ala639Glu	p.A639E	ENST00000373198	NM_133170.3	639	gCa/gAa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803610	1803610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	199	489	0	ENST00000260795.2:c.788A>G	p.Gln263Arg	p.Q263R	ENST00000260795		263	cAg/cGg																																																																														
IL7R	0	MSKCC	GRCh37	5	35876229	35876229	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	153	449	0	ENST00000303115.3:c.1021G>T	p.Gly341Ter	p.G341*	ENST00000303115	NM_002185.3	341	Gga/Tga																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271290	26271290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	158	409	0	ENST00000305910.3:c.323C>A	p.Thr108Asn	p.T108N	ENST00000305910	NM_003534.2	108	aCc/aAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47034491	47034491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	266	569	0	ENST00000329236.7:c.345G>T	p.Gln115His	p.Q115H	ENST00000329236	NM_001204466.1	115	caG/caT																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	386	941	1	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0018777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	45	452	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	60	699	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
MST1R	0	MSKCC	GRCh37	3	49928651	49928651	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	73	753	0	ENST00000296474.3:c.3623A>G	p.Asp1208Gly	p.D1208G	ENST00000296474	NM_002447.2	1208	gAc/gGc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670397	134670397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	101	510	0	ENST00000398015.3:c.308C>T	p.Pro103Leu	p.P103L	ENST00000398015	NM_004441.4	103	cCa/cTa																																																																														
APC	0	MSKCC	GRCh37	5	112128216	112128216	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	100	533	0	ENST00000257430.4:c.719del	p.Thr240LysfsTer53	p.T240Kfs*53	ENST00000257430	NM_000038.5	240	aCa/aa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32180931	32180931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	96	513	0	ENST00000375023.3:c.2419C>T	p.Arg807Cys	p.R807C	ENST00000375023	NM_004557.3	807	Cgc/Tgc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	29	419	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	19	550	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0018778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	56	661	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	63	719	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0018778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	54	580	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	28	482	0	ENST00000263967.3:c.344G>C	p.Arg115Pro	p.R115P	ENST00000263967	NM_006218.2	115	cGa/cCa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692883	89692883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	29	428	0	ENST00000371953.3:c.367C>T	p.His123Tyr	p.H123Y	ENST00000371953	NM_000314.4	123	Cac/Tac																																																																														
CCND1	0	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	117	786	0	ENST00000227507.2:c.857C>A	p.Thr286Lys	p.T286K	ENST00000227507	NM_053056.2	286	aCa/aAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099449	27099450	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAAG			P-0018778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	35	487	0	ENST00000324856.7:c.3687_3690dup	p.Asp1231Ter	p.D1231*	ENST00000324856	NM_006015.4	1229	aat/aaTAAGt																																																																														
CTCF	0	MSKCC	GRCh37	16	67650711	67650711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	77	704	0	ENST00000264010.4:c.1016G>A	p.Arg339Gln	p.R339Q	ENST00000264010	NM_006565.3	339	cGg/cAg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56181765	56181765	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	36	344	0	ENST00000399503.3:c.3989del	p.Ser1330TrpfsTer6	p.S1330Wfs*6	ENST00000399503	NM_005921.1	1330	tCg/tg																																																																														
RAC1	0	MSKCC	GRCh37	7	6431623	6431623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	33	449	0	ENST00000356142.4:c.176C>G	p.Ala59Gly	p.A59G	ENST00000356142	NM_018890.3	59	gCt/gGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151871316	151871316	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	32	543	0	ENST00000262189.6:c.9274A>G	p.Ile3092Val	p.I3092V	ENST00000262189	NM_170606.2	3092	Att/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	124	571	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251635	212251635	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	26	371	1	ENST00000342788.4:c.3424C>T	p.Arg1142Ter	p.R1142*	ENST00000342788	NM_005235.2	1142	Cga/Tga																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	380	788	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
BAP1	0	MSKCC	GRCh37	3	52437625	52437626	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0018784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	254	627	0	ENST00000460680.1:c.1535_1536del	p.Arg512LeufsTer24	p.R512Lfs*24	ENST00000460680	NM_004656.3	512	cGC/c																																																																														
TET1	0	MSKCC	GRCh37	10	70446412	70446412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	324	672	0	ENST00000373644.4:c.5352G>C	p.Lys1784Asn	p.K1784N	ENST00000373644	NM_030625.2	1784	aaG/aaC																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	94	317	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
PLCG2	0	MSKCC	GRCh37	16	81902829	81902829	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	116	569	0	ENST00000359376.3:c.490C>T	p.Arg164Ter	p.R164*	ENST00000359376	NM_002661.3	164	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	145	550	1	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
NF1	0	MSKCC	GRCh37	17	29663735	29663745	+	frameshift_variant	Frame_Shift_Del	DEL	ATATTGCTATT	ATATTGCTATT	-			P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	267	608	0	ENST00000358273.4:c.6230_6240del	p.Asp2077ValfsTer15	p.D2077Vfs*15	ENST00000358273	NM_001042492.2	2077	gATATTGCTATT/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	279	679	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	198	437	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	198	437	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139417370	139417370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	168	731	1	ENST00000277541.6:c.674C>T	p.Ser225Leu	p.S225L	ENST00000277541	NM_017617.3	225	tCg/tTg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	294	610	2	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
ESR1	0	MSKCC	GRCh37	6	152201885	152201885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	48	449	2	ENST00000206249.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000206249	NM_000125.3	247	Gaa/Aaa																																																																														
ATM	0	MSKCC	GRCh37	11	108186589	108186589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	30	297	0	ENST00000278616.4:c.6046G>C	p.Asp2016His	p.D2016H	ENST00000278616	NM_000051.3	2016	Gat/Cat																																																																														
DICER1	0	MSKCC	GRCh37	14	95570058	95570058	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0018786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	44	346	0	ENST00000343455.3:c.3675C>G	p.Tyr1225Ter	p.Y1225*	ENST00000343455	NM_177438.2	1225	taC/taG																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789623	3789623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	83	685	0	ENST00000262367.5:c.4236G>T	p.Met1412Ile	p.M1412I	ENST00000262367	NM_004380.2	1412	atG/atT																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573642	48573642	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	40	399	0	ENST00000342988.3:c.226A>G	p.Arg76Gly	p.R76G	ENST00000342988	NM_005359.5	76	Aga/Gga																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793286	242793286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	64	842	0	ENST00000334409.5:c.791G>A	p.Arg264His	p.R264H	ENST00000334409	NM_005018.2	264	cGc/cAc																																																																														
SPEN	0	MSKCC	GRCh37	1	16258028	16258028	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	24	401	0	ENST00000375759.3:c.5293A>T	p.Lys1765Ter	p.K1765*	ENST00000375759	NM_015001.2	1765	Aag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057661	27057661	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	63	703	2	ENST00000324856.7:c.1369C>T	p.Gln457Ter	p.Q457*	ENST00000324856	NM_006015.4	457	Caa/Taa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32915280	32915280	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	64	764	0	ENST00000380152.3:c.6788T>G	p.Val2263Gly	p.V2263G	ENST00000380152		2263	gTt/gGt																																																																														
TSHR	0	MSKCC	GRCh37	14	81609481	81609481	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	60	507	0	ENST00000298171.2:c.1079A>C	p.Glu360Ala	p.E360A	ENST00000298171	NM_000369.2	360	gAg/gCg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271795	15271795	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	245	791	0	ENST00000263388.2:c.6644C>G	p.Pro2215Arg	p.P2215R	ENST00000263388	NM_000435.2	2215	cCa/cGa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266095	41266095	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	82	334	0	ENST00000349496.5:c.92T>G	p.Leu31Arg	p.L31R	ENST00000349496	NM_001904.3	31	cTg/cGg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	88	329	0	ENST00000349496.5:c.109T>G	p.Ser37Ala	p.S37A	ENST00000349496	NM_001904.3	37	Tct/Gct																																																																														
SETD2	0	MSKCC	GRCh37	3	47168140	47168140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	49	625	0	ENST00000409792.3:c.85G>A	p.Glu29Lys	p.E29K	ENST00000409792	NM_014159.6	29	Gag/Aag																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41748233	41748233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	267	904	1	ENST00000226382.2:c.536C>T	p.Ser179Phe	p.S179F	ENST00000226382	NM_003924.3	179	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	116	260	0				ENST00000310581	NM_198253.2																																																																																
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	89	679	6	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	67	433	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	68	503	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	48	577	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	85	729	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																														
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	34	495	0	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720877	89720877	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	31	350	0	ENST00000371953.3:c.1026+2T>G		p.X342_splice	ENST00000371953	NM_000314.4	342																																																																															
SH2B3	0	MSKCC	GRCh37	12	111885145	111885145	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	63	518	0	ENST00000341259.2:c.1038delG	p.Leu347CysfsTer26	p.L347Cfs*26	ENST00000341259	NM_005475.2	345	Ggg/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	49	576	0	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692900	89692900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	89	478	2	ENST00000371953.3:c.384G>T	p.Lys128Asn	p.K128N	ENST00000371953	NM_000314.4	128	aaG/aaT																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741931	17741931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	33	207	0	ENST00000250003.3:c.602G>A	p.Ser201Asn	p.S201N	ENST00000250003	NM_002478.4	201	aGc/aAc																																																																														
BIRC3	0	MSKCC	GRCh37	11	102199668	102199668	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	45	586	0	ENST00000263464.3:c.1073A>G	p.Glu358Gly	p.E358G	ENST00000263464	NM_001165.4	358	gAg/gGg																																																																														
ETV6	0	MSKCC	GRCh37	12	12022433	12022433	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	111	1000	0	ENST00000396373.4:c.539A>G	p.His180Arg	p.H180R	ENST00000396373	NM_001987.4	180	cAc/cGc																																																																														
IRS2	0	MSKCC	GRCh37	13	110436386	110436386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	56	577	1	ENST00000375856.3:c.2015G>A	p.Ser672Asn	p.S672N	ENST00000375856	NM_003749.2	672	aGc/aAc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78923347	78923347	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	27	382	1	ENST00000306801.3:c.3370G>T	p.Gly1124Ter	p.G1124*	ENST00000306801	NM_020761.2	1124	Gga/Tga																																																																														
TERT	0	MSKCC	GRCh37	5	1293751	1293751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	67	791	2	ENST00000310581.5:c.1250C>T	p.Ala417Val	p.A417V	ENST00000310581	NM_198253.2	417	gCt/gTt																																																																														
RAD50	0	MSKCC	GRCh37	5	131931483	131931483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	22	332	0	ENST00000265335.6:c.2188C>A	p.Leu730Met	p.L730M	ENST00000265335		730	Ctg/Atg																																																																														
CCND3	0	MSKCC	GRCh37	6	41909246	41909246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	154	729	0	ENST00000372991.4:c.142G>A	p.Val48Met	p.V48M	ENST00000372991	NM_001760.3	48	Gtg/Atg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157405958	157405958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	49	563	0	ENST00000346085.5:c.2200G>A	p.Gly734Ser	p.G734S	ENST00000346085	NM_020732.3	734	Ggc/Agc																																																																														
INHBA	0	MSKCC	GRCh37	7	41739878	41739878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	64	469	0	ENST00000242208.4:c.95C>T	p.Ala32Val	p.A32V	ENST00000242208	NM_002192.2	32	gCc/gTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341267	8341267	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201344661		P-0018790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	16	219	0	ENST00000356435.5:c.4949G>A	p.Arg1650His	p.R1650H	ENST00000356435		1650	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	655	876	0	ENST00000269305.4:c.646G>C	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ctg																																																																														
MAX	0	MSKCC	GRCh37	14	65560514	65560514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	424	367	0	ENST00000358664.4:c.83A>G	p.His28Arg	p.H28R	ENST00000358664	NM_002382.4	28	cAt/cGt																																																																														
RB1	0	MSKCC	GRCh37	13	48941645	48941645	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	120	315	0	ENST00000267163.4:c.955A>T	p.Lys319Ter	p.K319*	ENST00000267163	NM_000321.2	319	Aaa/Taa																																																																														
GATA2	0	MSKCC	GRCh37	3	128200029	128200029	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	373	695	0	ENST00000341105.2:c.1276T>G	p.Ser426Ala	p.S426A	ENST00000341105	NM_032638.4	426	Tcc/Gcc																																																																														
KDR	0	MSKCC	GRCh37	4	55979482	55979482	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	167	462	0	ENST00000263923.4:c.965T>G	p.Val322Gly	p.V322G	ENST00000263923	NM_002253.2	322	gTc/gGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578497	7578498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	416	924	0	ENST00000269305.4:c.432dup	p.Leu145AlafsTer4	p.L145Afs*4	ENST00000269305	NM_001126112.2	144	-/G																																																																														
EPHA7	0	MSKCC	GRCh37	6	94068006	94068006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	82	378	3	ENST00000369303.4:c.956C>A	p.Ala319Asp	p.A319D	ENST00000369303	NM_004440.3	319	gCt/gAt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63526126	63526126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	198	745	1	ENST00000307078.5:c.2500C>T	p.Arg834Trp	p.R834W	ENST00000307078	NM_004655.3	834	Cgg/Tgg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096157	178096157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	77	355	0	ENST00000397062.3:c.1174G>A	p.Gly392Ser	p.G392S	ENST00000397062	NM_006164.4	392	Ggt/Agt																																																																														
BAP1	0	MSKCC	GRCh37	3	52436853	52436853	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	182	744	0	ENST00000460680.1:c.1925del	p.Glu642GlyfsTer13	p.E642Gfs*13	ENST00000460680	NM_004656.3	642	gAg/gg																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41750398	41750398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	54	296	0	ENST00000226382.2:c.230C>T	p.Pro77Leu	p.P77L	ENST00000226382	NM_003924.3	77	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578451	7578451	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	187	703	2	ENST00000269305.4:c.479T>A	p.Met160Lys	p.M160K	ENST00000269305	NM_001126112.2	160	aTg/aAg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949985	44949985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	63	226	0	ENST00000377967.4:c.3754G>A	p.Ala1252Thr	p.A1252T	ENST00000377967	NM_021140.2	1252	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	27	392	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0018800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	162	708	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0018800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	40	295	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88635834	88635834	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	42	403	0	ENST00000372037.3:c.59G>C	p.Arg20Pro	p.R20P	ENST00000372037	NM_004329.2	20	cGt/cCt																																																																														
SESN3	0	MSKCC	GRCh37	11	94923061	94923061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	104	670	0	ENST00000536441.1:c.407G>C	p.Gly136Ala	p.G136A	ENST00000536441	NM_144665.3	136	gGa/gCa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435477	18435478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	12	251	0	ENST00000266497.5:c.464dup	p.Asn155LysfsTer9	p.N155Kfs*9	ENST00000266497		154	-/A																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972578	32972578	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	90	558	0	ENST00000380152.3:c.9928A>G	p.Thr3310Ala	p.T3310A	ENST00000380152		3310	Aca/Gca																																																																														
PLCG2	0	MSKCC	GRCh37	16	81819671	81819671	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189301790		P-0018800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	144	477	3	ENST00000359376.3:c.77C>T	p.Thr26Met	p.T26M	ENST00000359376	NM_002661.3	26	aCg/aTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346763	89346763	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	26	319	0	ENST00000301030.4:c.6187G>C	p.Glu2063Gln	p.E2063Q	ENST00000301030	NM_001256183.1	2063	Gag/Cag																																																																														
PPARG	0	MSKCC	GRCh37	3	12447464	12447464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	29	491	0	ENST00000287820.6:c.703G>A	p.Glu235Lys	p.E235K	ENST00000287820	NM_015869.4	235	Gag/Aag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061185	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCACTTGAAGCGCTTCTG	GCACTTGAAGCGCTTCTG	-			P-0018812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	97	386	0	ENST00000250448.2:c.787_804del	p.Gln263_Cys268del	p.Q263_C268del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGC/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578429	7578429	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	235	755	0	ENST00000269305.4:c.501delG	p.Gln167HisfsTer3	p.Q167Hfs*3	ENST00000269305	NM_001126112.2	167	caG/ca																																																																														
MSH3	0	MSKCC	GRCh37	5	80021269	80021269	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0018812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	76	518	0	ENST00000265081.6:c.1341-3C>T		p.X447_splice	ENST00000265081	NM_002439.4	447																																																																															
KMT2C	0	MSKCC	GRCh37	7	151836815	151836815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	468	797	0	ENST00000262189.6:c.14405G>A	p.Gly4802Glu	p.G4802E	ENST00000262189	NM_170606.2	4802	gGg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	661	779	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	49033906	49033906	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	300	694	0	ENST00000267163.4:c.2043G>A	p.Trp681Ter	p.W681*	ENST00000267163	NM_000321.2	681	tgG/tgA																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89337281	89337281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150393722		P-0018816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	52	556	2	ENST00000301030.4:c.7750G>A	p.Ala2584Thr	p.A2584T	ENST00000301030	NM_001256183.1	2584	Gcc/Acc																																																																														
JAK3	0	MSKCC	GRCh37	19	17951086	17951086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	321	736	1	ENST00000458235.1:c.1207C>T	p.Arg403Cys	p.R403C	ENST00000458235	NM_000215.3	403	Cgc/Tgc																																																																														
SOS1	0	MSKCC	GRCh37	2	39262593	39262593	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	251	721	0	ENST00000402219.2:c.913C>G	p.Pro305Ala	p.P305A	ENST00000402219	NM_005633.3	305	Cct/Gct																																																																														
EP300	0	MSKCC	GRCh37	22	41553348	41553348	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	538	697	0	ENST00000263253.7:c.3437C>G	p.Ser1146Cys	p.S1146C	ENST00000263253	NM_001429.3	1146	tCt/tGt																																																																														
DAXX	0	MSKCC	GRCh37	6	33289492	33289494	+	splice_donor_variant,intron_variant	Splice_Site	ONP	TCA	TCA	AAC			P-0018816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	488	848	0	ENST00000374542.5:c.207+2_207+4delinsGTT		p.X69_splice	ENST00000374542	NM_001141970.1	69																																																																															
AR	0	MSKCC	GRCh37	X	66863162	66863162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	67	642	0	ENST00000374690.3:c.1681C>G	p.Leu561Val	p.L561V	ENST00000374690	NM_000044.3	561	Ctg/Gtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	62	518	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276755	15276755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138265894		P-0018817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	92	619	2	ENST00000263388.2:c.5510G>A	p.Arg1837His	p.R1837H	ENST00000263388	NM_000435.2	1837	cGt/cAt																																																																														
EED	0	MSKCC	GRCh37	11	85975225	85975225	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	38	188	0	ENST00000263360.6:c.646C>T	p.Arg216Ter	p.R216*	ENST00000263360	NM_003797.3	216	Cga/Tga																																																																														
TSC2	0	MSKCC	GRCh37	16	2135025	2135025	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0018817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	61	576	0	ENST00000219476.3:c.4567G>A	p.Glu1523Lys	p.E1523K	ENST00000219476	NM_000548.3	1523	Gag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187628401	187628401	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199600336		P-0018817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1227	103	656	0	ENST00000441802.2:c.2581A>G	p.Ile861Val	p.I861V	ENST00000441802	NM_005245.3	861	Att/Gtt																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031903	26031903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	28	211	0	ENST00000244661.2:c.386G>A	p.Arg129His	p.R129H	ENST00000244661	NM_003537.3	129	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	157	641	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	84	440	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	121	399	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	121	399	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	121	399	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	180	703	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
SMAD4	0	MSKCC	GRCh37	18	48581286	48581286	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	167	669	0	ENST00000342988.3:c.593del	p.Pro198GlnfsTer4	p.P198Qfs*4	ENST00000342988	NM_005359.5	197	aCc/ac																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264200	46264200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	74	286	0	ENST00000371998.3:c.1247C>T	p.Ala416Val	p.A416V	ENST00000371998		416	gCc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0018819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	561	430	0				ENST00000310581	NM_198253.2																																																																																
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	222	347	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0018819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	513	730	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521487	8521487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	400	640	2	ENST00000356435.5:c.751G>A	p.Gly251Arg	p.G251R	ENST00000356435		251	Gga/Aga																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435247	18435247	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	302	466	0	ENST00000266497.5:c.232T>A	p.Leu78Ile	p.L78I	ENST00000266497		78	Tta/Ata																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435040	18435040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	374	605	0	ENST00000266497.5:c.25C>T	p.Pro9Ser	p.P9S	ENST00000266497		9	Cca/Tca																																																																														
TBX3	0	MSKCC	GRCh37	12	115112034	115112034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	463	717	0	ENST00000257566.3:c.1706G>A	p.Gly569Glu	p.G569E	ENST00000257566	NM_016569.3	569	gGa/gAa																																																																														
PTCH1	0	MSKCC	GRCh37	9	98232165	98232165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	474	762	0	ENST00000331920.6:c.1777C>T	p.Pro593Ser	p.P593S	ENST00000331920	NM_000264.3	593	Cct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	432	796	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	302	635	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
CSDE1	0	MSKCC	GRCh37	1	115276409	115276409	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	327	665	0	ENST00000438362.2:c.919G>T	p.Glu307Ter	p.E307*	ENST00000438362	NM_001242891.1	307	Gaa/Taa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18656246	18656247	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	341	660	1	ENST00000266497.5:c.2925_2926delinsAG	p.Leu976Val	p.L976V	ENST00000266497		975	acCCta/acAGta																																																																														
ARID2	0	MSKCC	GRCh37	12	46244889	46244889	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	237	839	1	ENST00000334344.6:c.2983C>T	p.Gln995Ter	p.Q995*	ENST00000334344	NM_152641.2	995	Caa/Taa																																																																														
POLE	0	MSKCC	GRCh37	12	133210904	133210904	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	389	904	1	ENST00000320574.5:c.5872G>T	p.Glu1958Ter	p.E1958*	ENST00000320574	NM_006231.2	1958	Gaa/Taa																																																																														
IRS2	0	MSKCC	GRCh37	13	110434717	110434717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	369	811	0	ENST00000375856.3:c.3684G>T	p.Leu1228Phe	p.L1228F	ENST00000375856	NM_003749.2	1228	ttG/ttT																																																																														
NF1	0	MSKCC	GRCh37	17	29667637	29667637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	337	692	0	ENST00000358273.4:c.7036G>T	p.Asp2346Tyr	p.D2346Y	ENST00000358273	NM_001042492.2	2346	Gat/Tat																																																																														
EP300	0	MSKCC	GRCh37	22	41562627	41562627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	384	656	0	ENST00000263253.7:c.3831G>T	p.Lys1277Asn	p.K1277N	ENST00000263253	NM_001429.3	1277	aaG/aaT																																																																														
PPARG	0	MSKCC	GRCh37	3	12422897	12422897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	205	807	0	ENST00000287820.6:c.387G>T	p.Glu129Asp	p.E129D	ENST00000287820	NM_015869.4	129	gaG/gaT																																																																														
EPHA5	0	MSKCC	GRCh37	4	66270108	66270108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	302	682	1	ENST00000273854.3:c.1774G>T	p.Val592Phe	p.V592F	ENST00000273854	NM_004439.5	592	Gtc/Ttc																																																																														
APC	0	MSKCC	GRCh37	5	112162862	112162862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	319	651	0	ENST00000257430.4:c.1466C>T	p.Thr489Ile	p.T489I	ENST00000257430	NM_000038.5	489	aCt/aTt																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5557645	5557645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	165	718	0	ENST00000397747.3:c.659C>T	p.Thr220Ile	p.T220I	ENST00000397747	NM_025239.3	220	aCt/aTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0018821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	1828	691	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380347	14380347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	608	446	0	ENST00000256196.4:c.70G>T	p.Gly24Cys	p.G24C	ENST00000256196		24	Ggc/Tgc																																																																														
FANCA	0	MSKCC	GRCh37	16	89865632	89865632	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	138	578	0	ENST00000389301.3:c.835G>C	p.Asp279His	p.D279H	ENST00000389301	NM_000135.2	279	Gac/Cac																																																																														
TP53	0	MSKCC	GRCh37	17	7574026	7574027	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0018821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	692	732	0	ENST00000269305.4:c.1000_1001delinsTT	p.Gly334Leu	p.G334L	ENST00000269305	NM_001126112.2	334	GGg/TTg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59761336	59761336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	1035	659	2	ENST00000259008.2:c.3071G>T	p.Gly1024Val	p.G1024V	ENST00000259008	NM_032043.2	1024	gGg/gTg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89457246	89457246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	337	490	0	ENST00000336596.2:c.1727C>A	p.Ala576Glu	p.A576E	ENST00000336596	NM_005233.5	576	gCa/gAa																																																																														
APC	0	MSKCC	GRCh37	5	112178928	112178928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	298	553	0	ENST00000257430.4:c.7637C>T	p.Thr2546Ile	p.T2546I	ENST00000257430	NM_000038.5	2546	aCc/aTc																																																																														
SOX17	0	MSKCC	GRCh37	8	55371818	55371818	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	119	131	0	ENST00000297316.4:c.508G>T	p.Glu170Ter	p.E170*	ENST00000297316	NM_022454.3	170	Gag/Tag																																																																														
PREX2	0	MSKCC	GRCh37	8	68982089	68982089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	196	757	0	ENST00000288368.4:c.1463G>C	p.Arg488Pro	p.R488P	ENST00000288368	NM_024870.2	488	cGt/cCt																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	CA			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	139	641	1	ENST00000256078.4:c.182_183delAAinsTG	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTG																																																																														
CTCF	0	MSKCC	GRCh37	16	67645138	67645138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	169	607	1	ENST00000264010.4:c.403C>T	p.Gln135Ter	p.Q135*	ENST00000264010	NM_006565.3	135	Cag/Tag																																																																														
SPEN	0	MSKCC	GRCh37	1	16256783	16256783	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	132	515	0	ENST00000375759.3:c.4048A>G	p.Arg1350Gly	p.R1350G	ENST00000375759	NM_015001.2	1350	Aga/Gga																																																																														
ATM	0	MSKCC	GRCh37	11	108225566	108225566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	89	495	0	ENST00000278616.4:c.8815A>G	p.Arg2939Gly	p.R2939G	ENST00000278616	NM_000051.3	2939	Aga/Gga																																																																														
STK11	0	MSKCC	GRCh37	19	1219341	1219341	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	270	626	0	ENST00000326873.7:c.393C>G	p.Tyr131Ter	p.Y131*	ENST00000326873	NM_000455.4	131	taC/taG																																																																														
BCL6	0	MSKCC	GRCh37	3	187447006	187447006	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	112	513	0	ENST00000232014.4:c.1187A>C	p.Glu396Ala	p.E396A	ENST00000232014	NM_001130845.1	396	gAg/gCg																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128434631	128434631	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	138	587	0	ENST00000265960.3:c.223A>G	p.Ser75Gly	p.S75G	ENST00000265960	NM_001006617.1	75	Agt/Ggt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395053	139395053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	79	446	1	ENST00000277541.6:c.5885G>A	p.Arg1962His	p.R1962H	ENST00000277541	NM_017617.3	1962	cGc/cAc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922860	44922872	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGCCATGTTCC	CAGGCCATGTTCC	-			P-0018822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	98	206	0	ENST00000377967.4:c.1722_1734del	p.Gly575ValfsTer14	p.G575Vfs*14	ENST00000377967	NM_021140.2	574	gCAGGCCATGTTCCc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	961	771	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0018823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	145	374	0	ENST00000274335.5:c.1746-2A>T		p.X582_splice	ENST00000274335		582																																																																															
CDH1	0	MSKCC	GRCh37	16	68772246	68772246	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	49	758	0	ENST00000261769.5:c.95T>G	p.Phe32Cys	p.F32C	ENST00000261769	NM_004360.3	32	tTt/tGt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881136	37881136	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	290	662	0	ENST00000269571.5:c.2465T>G	p.Leu822Arg	p.L822R	ENST00000269571		822	cTg/cGg																																																																														
VEGFA	0	MSKCC	GRCh37	6	43749811	43749811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1540	178	426	1	ENST00000523873.1:c.664G>A	p.Glu222Lys	p.E222K	ENST00000523873		222	Gaa/Aaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860284	151860288	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGT	AAGGT	-			P-0018823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	202	487	0	ENST00000262189.6:c.10374_10378del	p.Pro3459Ter	p.P3459*	ENST00000262189	NM_170606.2	3458	ttACCTTgt/ttgt																																																																														
MEN1	0	MSKCC	GRCh37	11	64573174	64573174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	329	519	0	ENST00000337652.1:c.1133C>G	p.Pro378Arg	p.P378R	ENST00000337652	NM_130803.2	378	cCc/cGc																																																																														
ATRX	0	MSKCC	GRCh37	X	76814238	76814238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	244	452	0	ENST00000373344.5:c.6406G>T	p.Asp2136Tyr	p.D2136Y	ENST00000373344	NM_000489.3	2136	Gac/Tac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023568	27023568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	398	792	0	ENST00000324856.7:c.674C>T	p.Pro225Leu	p.P225L	ENST00000324856	NM_006015.4	225	cCc/cTc																																																																														
WT1	0	MSKCC	GRCh37	11	32456738	32456738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	294	604	0	ENST00000332351.3:c.154C>T	p.Arg52Cys	p.R52C	ENST00000332351	NM_024426.4	52	Cgt/Tgt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	172	636	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	417	866	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	2826	670	1	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
ATR	0	MSKCC	GRCh37	3	142280136	142280136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	66	482	1	ENST00000350721.4:c.1298G>A	p.Arg433His	p.R433H	ENST00000350721	NM_001184.3	433	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	68	433	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175521	112175521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	132	331	0	ENST00000257430.4:c.4230C>A	p.Cys1410Ter	p.C1410*	ENST00000257430	NM_000038.5	1410	tgC/tgA																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	207	419	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	207	419	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971099	21971099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	207	419	0	ENST00000304494.5:c.259C>T	p.Arg87Trp	p.R87W	ENST00000304494	NM_000077.4	87	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	529	695	3	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	356	562	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	267	446	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	187	567	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
AMER1	0	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	528	372	6	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112154991	112154991	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	67	537	3	ENST00000257430.4:c.1262G>A	p.Trp421Ter	p.W421*	ENST00000257430	NM_000038.5	421	tGg/tAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591852	48591852	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	118	345	2	ENST00000342988.3:c.1017del	p.Phe339LeufsTer45	p.F339Lfs*45	ENST00000342988	NM_005359.5	339	Ttt/tt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593494	48593494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	53	246	0	ENST00000342988.3:c.1245C>G	p.Asp415Glu	p.D415E	ENST00000342988	NM_005359.5	415	gaC/gaG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	111	495	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	261	322	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	265	225	0	ENST00000257430.4:c.4199del	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114903727	114903727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	467	683	0	ENST00000543371.1:c.731C>T	p.Pro244Leu	p.P244L	ENST00000543371	NM_001198531.1	244	cCa/cTa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473758	67473758	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	290	413	1	ENST00000327367.4:c.838A>T	p.Asn280Tyr	p.N280Y	ENST00000327367	NM_005902.3	280	Aat/Tat																																																																														
SOX9	0	MSKCC	GRCh37	17	70117912	70117913	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0018837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	208	346	0	ENST00000245479.2:c.380_381del	p.Tyr127SerfsTer124	p.Y127Sfs*124	ENST00000245479	NM_000346.3	127	tAC/t																																																																														
TSC1	0	MSKCC	GRCh37	9	135781466	135781466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	225	255	0	ENST00000298552.3:c.1499G>A	p.Arg500Gln	p.R500Q	ENST00000298552	NM_001162426.1	500	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	195	585	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8115745	8115745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	236	569	0	ENST00000346208.3:c.1091G>T	p.Arg364Ile	p.R364I	ENST00000346208		364	aGa/aTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845590	151845591	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0018840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	133	504	2	ENST00000262189.6:c.13421_13422delinsTT	p.Cys4474Phe	p.C4474F	ENST00000262189	NM_170606.2	4474	tGC/tTT																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	189	416	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	96	277	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	63	341	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	67	244	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1460	91	377	0	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779218	3779218	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	72	161	0	ENST00000262367.5:c.5830G>C	p.Ala1944Pro	p.A1944P	ENST00000262367	NM_004380.2	1944	Gcc/Ccc																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	84	330	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	177	227	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
AXL	0	MSKCC	GRCh37	19	41748914	41748914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1311	229	404	0	ENST00000301178.4:c.1439G>A	p.Arg480His	p.R480H	ENST00000301178	NM_021913.4	480	cGt/cAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692851	89692851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	21	129	0	ENST00000371953.3:c.335T>C	p.Leu112Pro	p.L112P	ENST00000371953	NM_000314.4	112	cTa/cCa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	92	596	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435128	110435129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs772322568		P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2257	379	675	3	ENST00000375856.3:c.3272dup	p.Lys1092GlufsTer233	p.K1092Efs*233	ENST00000375856	NM_003749.2	1091	ccg/ccCg																																																																														
AXL	0	MSKCC	GRCh37	19	41743896	41743896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2391	451	702	1	ENST00000301178.4:c.836delC	p.Pro279GlnfsTer18	p.P279Qfs*18	ENST00000301178	NM_021913.4	277	gaC/ga																																																																														
MDM2	0	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	54	312	0	ENST00000462284.1:c.961delC	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																																																														
APC	0	MSKCC	GRCh37	5	112177864	112177864	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	72	340	1	ENST00000257430.4:c.6579del	p.Val2194PhefsTer5	p.V2194Ffs*5	ENST00000257430	NM_000038.5	2191	ggA/gg																																																																														
CDH1	0	MSKCC	GRCh37	16	68845622	68845622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1576	90	563	0	ENST00000261769.5:c.868G>A	p.Asp290Asn	p.D290N	ENST00000261769	NM_004360.3	290	Gac/Aac																																																																														
SYK	0	MSKCC	GRCh37	9	93606313	93606313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1410	270	502	0	ENST00000375746.1:c.133C>T	p.Arg45Cys	p.R45C	ENST00000375746	NM_001174167.1	45	Cgc/Tgc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	29	377	0	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																														
RXRA	0	MSKCC	GRCh37	9	137309036	137309036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2115	404	642	3	ENST00000481739.1:c.643C>T	p.Arg215Trp	p.R215W	ENST00000481739	NM_002957.4	215	Cgg/Tgg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223175	36223175	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3053	593	852	0	ENST00000222270.7:c.5730del	p.Arg1911AspfsTer23	p.R1911Dfs*23	ENST00000222270	NM_014727.1	1909	Ccc/cc																																																																														
JAK1	0	MSKCC	GRCh37	1	65330468	65330468	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	50	320	0	ENST00000342505.4:c.1176+2T>C		p.X392_splice	ENST00000342505	NM_002227.2	392																																																																															
CDC73	0	MSKCC	GRCh37	1	193119483	193119483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	32	386	1	ENST00000367435.3:c.878A>G	p.Tyr293Cys	p.Y293C	ENST00000367435	NM_024529.4	293	tAc/tGc																																																																														
GATA3	0	MSKCC	GRCh37	10	8100354	8100355	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2285	529	676	0	ENST00000346208.3:c.333dup	p.Trp112LeufsTer191	p.W112Lfs*191	ENST00000346208		110	tcc/tCcc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948483	71948484	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2500	536	785	0	ENST00000298229.2:c.3201dup	p.Ser1068GlnfsTer17	p.S1068Qfs*17	ENST00000298229	NM_001567.3	1065	-/C																																																																														
KMT2D	0	MSKCC	GRCh37	12	49418641	49418641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1500	303	532	0	ENST00000301067.7:c.15873G>T	p.Glu5291Asp	p.E5291D	ENST00000301067	NM_003482.3	5291	gaG/gaT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438184	49438184	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1723	358	624	1	ENST00000301067.7:c.5083+2T>C		p.X1695_splice	ENST00000301067	NM_003482.3	1695																																																																															
KMT2D	0	MSKCC	GRCh37	12	49445094	49445095	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1407	239	466	0	ENST00000301067.7:c.2371dup	p.Gln791ProfsTer3	p.Q791Pfs*3	ENST00000301067	NM_003482.3	791	cag/cCag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857691	9857691	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	47	233	0	ENST00000330684.3:c.3710A>G	p.Asp1237Gly	p.D1237G	ENST00000330684	NM_001134407.1	1237	gAt/gGt																																																																														
NUP93	0	MSKCC	GRCh37	16	56878487	56878487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	162	417	2	ENST00000308159.5:c.2426C>T	p.Ala809Val	p.A809V	ENST00000308159	NM_014669.4	809	gCg/gTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89341589	89341589	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	333	309	2	ENST00000301030.4:c.7481del	p.Pro2494LeufsTer8	p.P2494Lfs*8	ENST00000301030	NM_001256183.1	2494	cCt/ct																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89357063	89357063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1344	298	334	0	ENST00000301030.4:c.571G>A	p.Gly191Arg	p.G191R	ENST00000301030	NM_001256183.1	191	Ggg/Agg																																																																														
FANCA	0	MSKCC	GRCh37	16	89845228	89845228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	233	495	2	ENST00000389301.3:c.1807T>C	p.Phe603Leu	p.F603L	ENST00000389301	NM_000135.2	603	Ttt/Ctt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029445	16029445	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	82	511	0	ENST00000268712.3:c.1585del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	529	Gaa/aa																																																																														
NF1	0	MSKCC	GRCh37	17	29667665	29667665	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	74	306	0	ENST00000358273.4:c.7062+2T>C		p.X2354_splice	ENST00000358273	NM_001042492.2	2354																																																																															
AXIN2	0	MSKCC	GRCh37	17	63533643	63533643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1683	107	492	1	ENST00000307078.5:c.1511G>A	p.Gly504Asp	p.G504D	ENST00000307078	NM_004655.3	504	gGc/gAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212170	5212170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1524	372	589	2	ENST00000357368.4:c.4861G>A	p.Val1621Met	p.V1621M	ENST00000357368	NM_002850.3	1621	Gtg/Atg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10265265	10265265	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	106	225	0	ENST00000340748.4:c.1781A>C	p.Gln594Pro	p.Q594P	ENST00000340748		594	cAg/cCg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15285020	15285020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1399	285	474	0	ENST00000263388.2:c.4595T>C	p.Leu1532Pro	p.L1532P	ENST00000263388	NM_000435.2	1532	cTg/cCg																																																																														
POLD1	0	MSKCC	GRCh37	19	50905543	50905543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2127	277	624	6	ENST00000440232.2:c.671G>A	p.Arg224His	p.R224H	ENST00000440232	NM_002691.3	224	cGc/cAc																																																																														
POLD1	0	MSKCC	GRCh37	19	50905579	50905579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2035	454	719	0	ENST00000440232.2:c.707T>C	p.Leu236Pro	p.L236P	ENST00000440232	NM_002691.3	236	cTg/cCg																																																																														
POLD1	0	MSKCC	GRCh37	19	50910274	50910274	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1893	131	502	0	ENST00000440232.2:c.1529T>C	p.Val510Ala	p.V510A	ENST00000440232	NM_002691.3	510	gTg/gCg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52728991	52728991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1246	230	491	0	ENST00000322088.6:c.1683G>T	p.Lys561Asn	p.K561N	ENST00000322088	NM_014225.5	561	aaG/aaT																																																																														
MSH6	0	MSKCC	GRCh37	2	48033604	48033604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	34	392	0	ENST00000234420.5:c.3815A>G	p.Glu1272Gly	p.E1272G	ENST00000234420	NM_000179.2	1272	gAa/gGa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198268473	198268473	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	45	393	0	ENST00000335508.6:c.1555A>T	p.Ile519Phe	p.I519F	ENST00000335508	NM_012433.2	519	Att/Ttt																																																																														
CASP8	0	MSKCC	GRCh37	2	202136316	202136316	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	96	447	0	ENST00000358485.4:c.560T>C	p.Ile187Thr	p.I187T	ENST00000358485	NM_001080125.1	187	aTc/aCc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248366	212248366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	49	185	0	ENST00000342788.4:c.3901T>C	p.Tyr1301His	p.Y1301H	ENST00000342788	NM_005235.2	1301	Tac/Cac																																																																														
RAC2	0	MSKCC	GRCh37	22	37627977	37627977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1881	355	587	4	ENST00000249071.6:c.283G>A	p.Ala95Thr	p.A95T	ENST00000249071	NM_002872.4	95	Gcc/Acc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71096195	71096195	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	129	246	0	ENST00000318789.4:c.562A>G	p.Met188Val	p.M188V	ENST00000318789	NM_032682.5	188	Atg/Gtg																																																																														
GATA2	0	MSKCC	GRCh37	3	128202794	128202794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1726	198	465	0	ENST00000341105.2:c.926A>G	p.Asp309Gly	p.D309G	ENST00000341105	NM_032638.4	309	gAc/gGc																																																																														
GATA2	0	MSKCC	GRCh37	3	128204987	128204987	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	136	329	0	ENST00000341105.2:c.454A>G	p.Ser152Gly	p.S152G	ENST00000341105	NM_032638.4	152	Agc/Ggc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138456589	138456589	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	43	546	0	ENST00000289153.2:c.761T>C	p.Val254Ala	p.V254A	ENST00000289153	NM_006219.2	254	gTa/gCa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807799	1807800	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1459	354	473	0	ENST00000260795.2:c.1861dup	p.Arg621ProfsTer44	p.R621Pfs*44	ENST00000260795		620	gcc/gCcc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957488	1957488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1261	100	396	1	ENST00000382891.5:c.2587C>T	p.Pro863Ser	p.P863S	ENST00000382891	NM_133335.3	863	Cct/Tct																																																																														
FAT1	0	MSKCC	GRCh37	4	187540043	187540043	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	50	357	0	ENST00000441802.2:c.7697T>C	p.Val2566Ala	p.V2566A	ENST00000441802	NM_005245.3	2566	gTc/gCc																																																																														
FAT1	0	MSKCC	GRCh37	4	187628740	187628740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	106	531	0	ENST00000441802.2:c.2242T>C	p.Phe748Leu	p.F748L	ENST00000441802	NM_005245.3	748	Ttc/Ctc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589609	67589610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	50	374	0	ENST00000274335.5:c.1378dupA	p.Ser460LysfsTer5	p.S460Kfs*5	ENST00000274335		458	gaa/gAaa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67590371	67590371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	28	163	0	ENST00000274335.5:c.1433A>G	p.Gln478Arg	p.Q478R	ENST00000274335		478	cAa/cGa																																																																														
RASA1	0	MSKCC	GRCh37	5	86627275	86627275	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	33	275	0	ENST00000274376.6:c.650T>C	p.Val217Ala	p.V217A	ENST00000274376	NM_002890.2	217	gTa/gCa																																																																														
NPM1	0	MSKCC	GRCh37	5	170819753	170819753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	10	142	0	ENST00000296930.5:c.392A>G	p.Glu131Gly	p.E131G	ENST00000296930	NM_002520.6	131	gAg/gGg																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158537	26158537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	211	438	0	ENST00000289316.2:c.140A>G	p.Lys47Arg	p.K47R	ENST00000289316	NM_138720.2	47	aAg/aGg																																																																														
PNRC1	0	MSKCC	GRCh37	6	89790796	89790796	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1970	413	676	0	ENST00000336032.3:c.183del	p.Gly63GlufsTer6	p.G63Efs*6	ENST00000336032	NM_006813.2	61	ctA/ct																																																																														
ESR1	0	MSKCC	GRCh37	6	152265478	152265478	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	237	427	0	ENST00000206249.3:c.931A>G	p.Thr311Ala	p.T311A	ENST00000206249	NM_000125.3	311	Acg/Gcg																																																																														
MET	0	MSKCC	GRCh37	7	116409770	116409770	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	27	268	0	ENST00000397752.3:c.2655A>G	p.Ile885Met	p.I885M	ENST00000397752	NM_000245.2	885	atA/atG																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38147995	38147995	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	104	505	0	ENST00000317025.8:c.3116del	p.Lys1039ArgfsTer13	p.K1039Rfs*13	ENST00000317025	NM_023034.1	1039	aAg/ag																																																																														
FGFR1	0	MSKCC	GRCh37	8	38282124	38282124	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1375	367	554	0	ENST00000425967.3:c.932A>G	p.Tyr311Cys	p.Y311C	ENST00000425967	NM_001174067.1	311	tAc/tGc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971012	21971012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1430	353	428	0	ENST00000304494.5:c.346G>A	p.Asp116Asn	p.D116N	ENST00000304494	NM_000077.4	116	Gac/Aac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971012	21971012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1430	353	428	0	ENST00000304494.5:c.346G>A	p.Asp116Asn	p.D116N	ENST00000304494	NM_000077.4	116	Gac/Aac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971012	21971012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1430	353	428	0	ENST00000304494.5:c.346G>A	p.Asp116Asn	p.D116N	ENST00000304494	NM_000077.4	116	Gac/Aac																																																																														
TRAF2	0	MSKCC	GRCh37	9	139814741	139814741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	267	343	2	ENST00000247668.2:c.734C>T	p.Ala245Val	p.A245V	ENST00000247668	NM_021138.3	245	gCc/gTc																																																																														
RBM10	0	MSKCC	GRCh37	X	47041005	47041005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	58	242	1	ENST00000329236.7:c.1301C>T	p.Ala434Val	p.A434V	ENST00000329236	NM_001204466.1	434	gCc/gTc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780226	9780226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	521	700	0	ENST00000377346.4:c.1396G>A	p.Asp466Asn	p.D466N	ENST00000377346	NM_005026.3	466	Gat/Aat																																																																														
CSF3R	0	MSKCC	GRCh37	1	36941127	36941127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	310	498	3	ENST00000361632.4:c.212C>T	p.Pro71Leu	p.P71L	ENST00000361632		71	cCc/cTc																																																																														
JAK1	0	MSKCC	GRCh37	1	65344760	65344760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	247	338	0	ENST00000342505.4:c.277C>T	p.Arg93Cys	p.R93C	ENST00000342505	NM_002227.2	93	Cgc/Tgc																																																																														
NRAS	0	MSKCC	GRCh37	1	115251269	115251269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	302	413	0	ENST00000369535.4:c.457G>A	p.Glu153Lys	p.E153K	ENST00000369535	NM_002524.4	153	Gaa/Aaa																																																																														
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	377	492	0	ENST00000369535.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000369535	NM_002524.4	12	Ggt/Cgt																																																																														
RET	0	MSKCC	GRCh37	10	43622074	43622074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200989078		P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	322	418	0	ENST00000355710.3:c.3091G>A	p.Asp1031Asn	p.D1031N	ENST00000355710	NM_020975.4	1031	Gac/Aac																																																																														
PRKD1	0	MSKCC	GRCh37	14	30068942	30068942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	531	791	0	ENST00000331968.5:c.1987C>T	p.His663Tyr	p.H663Y	ENST00000331968	NM_002742.2	663	Cat/Tat																																																																														
IDH2	0	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	280	434	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858732	9858732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	178	323	1	ENST00000330684.3:c.2669C>T	p.Ser890Phe	p.S890F	ENST00000330684	NM_001134407.1	890	tCc/tTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9984848	9984848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	480	577	1	ENST00000330684.3:c.1117G>A	p.Glu373Lys	p.E373K	ENST00000330684	NM_001134407.1	373	Gaa/Aaa																																																																														
NF1	0	MSKCC	GRCh37	17	29585405	29585405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	441	611	1	ENST00000358273.4:c.4217G>A	p.Gly1406Glu	p.G1406E	ENST00000358273	NM_001042492.2	1406	gGa/gAa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41223160	41223160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	352	468	0	ENST00000357654.3:c.4771G>A	p.Gly1591Ser	p.G1591S	ENST00000357654	NM_007294.3	1591	Ggc/Agc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226242	2226242	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	585	778	0	ENST00000398665.3:c.3722G>A	p.Trp1241Ter	p.W1241*	ENST00000398665	NM_032482.2	1241	tGg/tAg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144026	11144026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	459	630	1	ENST00000344626.4:c.3607C>T	p.Arg1203Cys	p.R1203C	ENST00000344626	NM_003072.3	1203	Cgc/Tgc																																																																														
AKT2	0	MSKCC	GRCh37	19	40743950	40743950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	541	628	2	ENST00000392038.2:c.757C>T	p.Arg253Trp	p.R253W	ENST00000392038	NM_001626.4	253	Cgg/Tgg																																																																														
ERCC3	0	MSKCC	GRCh37	2	128044362	128044362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	405	544	0	ENST00000285398.2:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000285398	NM_000122.1	420	tCc/tTc																																																																														
CASP8	0	MSKCC	GRCh37	2	202131228	202131228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	335	436	0	ENST00000358485.4:c.196C>T	p.Leu66Phe	p.L66F	ENST00000358485	NM_001080125.1	66	Ctt/Ttt																																																																														
EP300	0	MSKCC	GRCh37	22	41531825	41531825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	433	553	1	ENST00000263253.7:c.1537C>T	p.Pro513Ser	p.P513S	ENST00000263253	NM_001429.3	513	Cct/Tct																																																																														
RYBP	0	MSKCC	GRCh37	3	72427585	72427585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	148	229	0	ENST00000477973.2:c.903C>T	p.Ser302Phe	p.S302F	ENST00000477973	NM_012234.5	302	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	258	343	1				ENST00000310581	NM_198253.2																																																																																
MSH3	0	MSKCC	GRCh37	5	79966117	79966117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	261	450	2	ENST00000265081.6:c.781G>A	p.Glu261Lys	p.E261K	ENST00000265081	NM_002439.4	261	Gaa/Aaa																																																																														
MDC1	0	MSKCC	GRCh37	6	30680014	30680014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	777	509	0	ENST00000376406.3:c.1705G>A	p.Glu569Lys	p.E569K	ENST00000376406	NM_014641.2	569	Gaa/Aaa																																																																														
ROS1	0	MSKCC	GRCh37	6	117663602	117663602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	422	628	2	ENST00000368508.3:c.4630C>T	p.Pro1544Ser	p.P1544S	ENST00000368508	NM_002944.2	1544	Cca/Tca																																																																														
CARD11	0	MSKCC	GRCh37	7	2959121	2959121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	434	635	1	ENST00000396946.4:c.2395G>A	p.Asp799Asn	p.D799N	ENST00000396946	NM_032415.4	799	Gat/Aat																																																																														
PRDM14	0	MSKCC	GRCh37	8	70970979	70970979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	582	805	0	ENST00000276594.2:c.1282G>A	p.Gly428Ser	p.G428S	ENST00000276594	NM_024504.3	428	Ggc/Agc																																																																														
PPP6C	0	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	316	412	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115923	8115923	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	84	590	0	ENST00000346208.3:c.1271del	p.Pro424ArgfsTer51	p.P424Rfs*51	ENST00000346208		423	caC/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1370	189	801	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
BRAF	0	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	193	515	0	ENST00000288602.6:c.1391G>T	p.Gly464Val	p.G464V	ENST00000288602	NM_004333.4	464	gGa/gTa																																																																														
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	103	286	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	212	653	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993828	72993828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	128	336	0	ENST00000268489.5:c.217G>A	p.Glu73Lys	p.E73K	ENST00000268489	NM_006885.3	73	Gag/Aag																																																																														
SOX9	0	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	118	479	0	ENST00000245479.2:c.340G>C	p.Val114Leu	p.V114L	ENST00000245479	NM_000346.3	114	Gtg/Ctg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670729	134670729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	72	512	0	ENST00000398015.3:c.640G>T	p.Glu214Ter	p.E214*	ENST00000398015	NM_004441.4	214	Gag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112175559	112175560	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	206	456	0	ENST00000257430.4:c.4268_4269del	p.Leu1423ProfsTer3	p.L1423Pfs*3	ENST00000257430	NM_000038.5	1423	cTT/c																																																																														
HGF	0	MSKCC	GRCh37	7	81392165	81392165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	28	274	0	ENST00000222390.5:c.112A>G	p.Thr38Ala	p.T38A	ENST00000222390	NM_000601.4	38	Aca/Gca																																																																														
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	44	676	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																														
EGFR	0	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0018847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	77	586	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47034420	47034420	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0018847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	43	377	0	ENST00000329236.7:c.274C>T	p.Gln92Ter	p.Q92*	ENST00000329236	NM_001204466.1	92	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	188	807	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	73	744	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	330	619	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	1123	757	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472569	88472569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	244	598	0	ENST00000360948.2:c.1986G>T	p.Gln662His	p.Q662H	ENST00000360948	NM_001012338.2	662	caG/caT																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	269	406	1	ENST00000397062.3:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000397062	NM_006164.4	29	Gat/Tat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445040	49445041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	301	521	0	ENST00000301067.7:c.2425dupC	p.Gln809ProfsTer3	p.Q809Pfs*3	ENST00000301067	NM_003482.3	809	cag/cCag																																																																														
NEGR1	0	MSKCC	GRCh37	1	72241923	72241923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	118	471	0	ENST00000357731.5:c.467T>C	p.Val156Ala	p.V156A	ENST00000357731	NM_173808.2	156	gTc/gCc																																																																														
SUFU	0	MSKCC	GRCh37	10	104357035	104357035	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	446	579	0	ENST00000369902.3:c.895C>T	p.Arg299Ter	p.R299*	ENST00000369902	NM_016169.3	299	Cga/Tga																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281275	49281275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	234	800	0	ENST00000282018.3:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000282018	NM_020377.2	108	Gac/Tac																																																																														
NF1	0	MSKCC	GRCh37	17	29654848	29654848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	82	301	2	ENST00000358273.4:c.5600C>A	p.Pro1867Gln	p.P1867Q	ENST00000358273	NM_001042492.2	1867	cCg/cAg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566814	212566814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	153	341	0	ENST00000342788.4:c.1367G>C	p.Gly456Ala	p.G456A	ENST00000342788	NM_005235.2	456	gGa/gCa																																																																														
EP300	0	MSKCC	GRCh37	22	41573941	41573941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	554	819	0	ENST00000263253.7:c.6226G>T	p.Ala2076Ser	p.A2076S	ENST00000263253	NM_001429.3	2076	Gcc/Tcc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134884884	134884884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	341	597	1	ENST00000398015.3:c.1660G>A	p.Val554Met	p.V554M	ENST00000398015	NM_004441.4	554	Gtg/Atg																																																																														
RASA1	0	MSKCC	GRCh37	5	86676363	86676363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	203	400	0	ENST00000274376.6:c.2641G>C	p.Val881Leu	p.V881L	ENST00000274376	NM_002890.2	881	Gtt/Ctt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449780	149449780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	536	657	1	ENST00000286301.3:c.1284C>G	p.Asn428Lys	p.N428K	ENST00000286301	NM_005211.3	428	aaC/aaG																																																																														
ATRX	0	MSKCC	GRCh37	X	76829820	76829820	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018852-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	242	425	0	ENST00000373344.5:c.6221A>T	p.Glu2074Val	p.E2074V	ENST00000373344	NM_000489.3	2074	gAg/gTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0018854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	405	474	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	85	261	0				ENST00000310581	NM_198253.2																																																																																
CARD11	0	MSKCC	GRCh37	7	2962804	2962804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	152	426	1	ENST00000396946.4:c.2104G>A	p.Glu702Lys	p.E702K	ENST00000396946	NM_032415.4	702	Gag/Aag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266134	41266136	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0018854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	82	240	0	ENST00000349496.5:c.133_135delTCT	p.Ser45del	p.S45del	ENST00000349496	NM_001904.3	44	cCTTct/cct																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0018854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	79	263	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827988	40827988	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	105	337	0	ENST00000373198.4:c.2440C>T	p.Gln814Ter	p.Q814*	ENST00000373198	NM_133170.3	814	Cag/Tag																																																																														
EPHA7	2045	MSKCC	GRCh37	6	93965706	93965706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	122	345	0	ENST00000369303.4:c.2222G>A	p.Gly741Glu	p.G741E	ENST00000369303	NM_004440.3	741	gGa/gAa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118342931	118342931	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	63	391	0	ENST00000534358.1:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000534358	NM_005933.3	353	Cga/Tga																																																																														
POLE	0	MSKCC	GRCh37	12	133238161	133238161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	146	422	0	ENST00000320574.5:c.2816C>T	p.Ala939Val	p.A939V	ENST00000320574	NM_006231.2	939	gCc/gTc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3777972	3777972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	193	625	0	ENST00000262367.5:c.7076C>T	p.Pro2359Leu	p.P2359L	ENST00000262367	NM_004380.2	2359	cCa/cTa																																																																														
MAPK3	0	MSKCC	GRCh37	16	30129707	30129707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	122	343	2	ENST00000263025.4:c.506C>T	p.Pro169Leu	p.P169L	ENST00000263025	NM_002746.2	169	cCc/cTc																																																																														
ERG	0	MSKCC	GRCh37	21	39755561	39755561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	111	258	0	ENST00000288319.7:c.1204C>T	p.His402Tyr	p.H402Y	ENST00000288319	NM_182918.3	402	Cac/Tac																																																																														
NF2	0	MSKCC	GRCh37	22	30051646	30051646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	114	269	0	ENST00000338641.4:c.580G>A	p.Glu194Lys	p.E194K	ENST00000338641	NM_000268.3	194	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	332	572	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0018855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	96	441	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175136	112175136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	45	221	0	ENST00000257430.4:c.3845C>A	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/tAa																																																																														
ELF3	0	MSKCC	GRCh37	1	201982980	201982985	+	inframe_deletion	In_Frame_Del	DEL	GAGTTC	GAGTTC	-			P-0018855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	232	663	1	ENST00000359651.3:c.829_834del	p.Glu277_Phe278del	p.E277_F278del	ENST00000359651		277	GAGTTC/-																																																																														
ROS1	0	MSKCC	GRCh37	6	117710932	117710932	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	193	374	0	ENST00000368508.3:c.1340T>A	p.Val447Glu	p.V447E	ENST00000368508	NM_002944.2	447	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	94	634	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	91	677	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	46	301	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	90	345	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	90	345	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	90	345	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
AXIN1	0	MSKCC	GRCh37	16	364679	364679	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	70	600	1	ENST00000262320.3:c.883G>T	p.Gly295Ter	p.G295*	ENST00000262320	NM_003502.3	295	Gga/Tga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591108	67591108	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	15	404	0	ENST00000274335.5:c.1701A>C	p.Lys567Asn	p.K567N	ENST00000274335		567	aaA/aaC																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	210	341	3	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	387	595	3	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851754	134851754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56396912		P-0018857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	227	625	2	ENST00000398015.3:c.1160C>T	p.Thr387Met	p.T387M	ENST00000398015	NM_004441.4	387	aCg/aTg																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741637	17741637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	98	371	0	ENST00000250003.3:c.308G>A	p.Arg103His	p.R103H	ENST00000250003	NM_002478.4	103	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	130	603	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871245	12871245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	28	209	0	ENST00000228872.4:c.472G>A	p.Asp158Asn	p.D158N	ENST00000228872	NM_004064.3	158	Gac/Aac																																																																														
BRCA2	0	MSKCC	GRCh37	13	32929053	32929053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	67	895	0	ENST00000380152.3:c.7063G>A	p.Glu2355Lys	p.E2355K	ENST00000380152		2355	Gaa/Aaa																																																																														
CDH1	0	MSKCC	GRCh37	16	68772279	68772279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	247	816	0	ENST00000261769.5:c.128G>T	p.Arg43Leu	p.R43L	ENST00000261769	NM_004360.3	43	cGg/cTg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2191155	2191155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	109	978	0	ENST00000398665.3:c.409G>A	p.Gly137Arg	p.G137R	ENST00000398665	NM_032482.2	137	Ggg/Agg																																																																														
KDR	0	MSKCC	GRCh37	4	55961787	55961787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	183	657	1	ENST00000263923.4:c.2774C>A	p.Ser925Tyr	p.S925Y	ENST00000263923	NM_002253.2	925	tCc/tAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TCT			P-0018858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2188	207	615	0	ENST00000275493.2:c.2303_2305delinsTCT	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTCTtg																																																																														
LATS2	0	MSKCC	GRCh37	13	21555761	21555761	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	137	748	2	ENST00000382592.4:c.2509G>T	p.Glu837Ter	p.E837*	ENST00000382592	NM_014572.2	837	Gag/Tag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244290	153244290	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	67	297	0	ENST00000281708.4:c.1867del	p.His623IlefsTer5	p.H623Ifs*5	ENST00000281708	NM_033632.3	623	Cat/at																																																																														
TP53	0	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	337	461	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																														
APC	0	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	243	260	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936046	178936046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	42	184	0	ENST00000263967.3:c.1588C>A	p.Gln530Lys	p.Q530K	ENST00000263967	NM_006218.2	530	Cag/Aag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89156920	89156933	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCTCCTTCTCAG	CTCCTCCTTCTCAG	-			P-0018862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	104	670	0	ENST00000336596.2:c.24_37del	p.Leu10CysfsTer15	p.L10Cfs*15	ENST00000336596	NM_005233.5	8	CTCCTCCTTCTCAGc/c																																																																														
CSF1R	0	MSKCC	GRCh37	5	149453003	149453003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	83	471	0	ENST00000286301.3:c.943G>A	p.Val315Met	p.V315M	ENST00000286301	NM_005211.3	315	Gtg/Atg																																																																														
JAK2	0	MSKCC	GRCh37	9	5081841	5081841	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	196	290	0	ENST00000381652.3:c.2553del	p.Leu852TyrfsTer30	p.L852Yfs*30	ENST00000381652	NM_004972.3	851	Ttt/tt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	80	683	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	49	365	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
PTEN	0	MSKCC	GRCh37	10	89692869	89692869	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	41	372	0	ENST00000371953.3:c.353A>T	p.His118Leu	p.H118L	ENST00000371953	NM_000314.4	118	cAt/cTt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0018864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	100	843	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105917	27105917	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0018864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	221	502	0	ENST00000324856.7:c.5528del	p.His1843ProfsTer40	p.H1843Pfs*40	ENST00000324856	NM_006015.4	1843	cAc/cc																																																																														
SLX4	0	MSKCC	GRCh37	16	3633465	3633465	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	283	964	0	ENST00000294008.3:c.4786A>C	p.Lys1596Gln	p.K1596Q	ENST00000294008	NM_032444.2	1596	Aag/Cag																																																																														
ATRX	0	MSKCC	GRCh37	X	76939554	76939554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	271	689	0	ENST00000373344.5:c.1194del	p.Leu399TrpfsTer15	p.L399Wfs*15	ENST00000373344	NM_000489.3	398	gtG/gt																																																																														
GLI1	0	MSKCC	GRCh37	12	57864328	57864328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201538749		P-0018870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	353	796	0	ENST00000228682.2:c.1805C>T	p.Ser602Leu	p.S602L	ENST00000228682	NM_005269.2	602	tCg/tTg																																																																														
IRS1	0	MSKCC	GRCh37	2	227662633	227662633	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	106	597	0	ENST00000305123.5:c.822del	p.Asn275ThrfsTer25	p.N275Tfs*25	ENST00000305123	NM_005544.2	274	tcC/tc																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0018880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	19	850	2	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
CDK12	0	MSKCC	GRCh37	17	37676267	37676267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	380	1000	3	ENST00000447079.4:c.3022C>T	p.Arg1008Trp	p.R1008W	ENST00000447079	NM_015083.1	1008	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	216	837	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	151	615	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa																																																																														
RB1	0	MSKCC	GRCh37	13	48939031	48939031	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	84	430	0	ENST00000267163.4:c.863T>A	p.Val288Glu	p.V288E	ENST00000267163	NM_000321.2	288	gTg/gAg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30194876	30194876	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	141	629	0	ENST00000331968.5:c.269C>G	p.Pro90Arg	p.P90R	ENST00000331968	NM_002742.2	90	cCt/cGt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11134277	11134277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	208	784	0	ENST00000344626.4:c.2943G>C	p.Lys981Asn	p.K981N	ENST00000344626	NM_003072.3	981	aaG/aaC																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098988	178098988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	89	397	0	ENST00000397062.3:c.57G>C	p.Leu19Phe	p.L19F	ENST00000397062	NM_006164.4	19	ttG/ttC																																																																														
STAG2	0	MSKCC	GRCh37	X	123197020	123197020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	93	797	0	ENST00000218089.9:c.1786G>C	p.Asp596His	p.D596H	ENST00000218089	NM_001042749.1	596	Gat/Cat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0018882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	259	613	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0018882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	209	608	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
CDH1	0	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	277	724	0	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																														
AMER1	0	MSKCC	GRCh37	X	63409944	63409944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	164	442	0	ENST00000330258.3:c.3223G>C	p.Ala1075Pro	p.A1075P	ENST00000330258	NM_152424.3	1075	Gcc/Ccc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15974722	15974722	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0018882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	204	467	0	ENST00000268712.3:c.4152+1del		p.X1384_splice	ENST00000268712	NM_006311.3	1384																																																																															
RUNX1	0	MSKCC	GRCh37	21	36206728	36206728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	255	655	0	ENST00000300305.3:c.784C>T	p.Gln262Ter	p.Q262*	ENST00000300305		262	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	41	1252	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	54	1059	0	ENST00000171111.5:c.1264G>T	p.Asp422Tyr	p.D422Y	ENST00000171111	NM_203500.1	422	Gat/Tat																																																																														
TET1	0	MSKCC	GRCh37	10	70332805	70332805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	55	1048	0	ENST00000373644.4:c.710G>C	p.Ser237Thr	p.S237T	ENST00000373644	NM_030625.2	237	aGt/aCt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445043	49445043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	55	758	1	ENST00000301067.7:c.2423C>T	p.Pro808Leu	p.P808L	ENST00000301067	NM_003482.3	808	cCc/cTc																																																																														
MGA	23269	MSKCC	GRCh37	15	42053955	42053955	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	42	743	1	ENST00000219905.7:c.7417G>T	p.Gly2473Ter	p.G2473*	ENST00000219905	NM_001164273.1	2473	Gga/Tga																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610198	10610198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	113	1000	0	ENST00000171111.5:c.512G>A	p.Cys171Tyr	p.C171Y	ENST00000171111	NM_203500.1	171	tGc/tAc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149502704	149502704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	72	683	0	ENST00000261799.4:c.2084G>T	p.Arg695Leu	p.R695L	ENST00000261799	NM_002609.3	695	cGc/cTc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149513451	149513452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	81	794	1	ENST00000261799.4:c.751dup	p.Arg251ProfsTer13	p.R251Pfs*13	ENST00000261799	NM_002609.3	251	cgc/cCgc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965605	93965605	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	68	887	0	ENST00000369303.4:c.2323T>A	p.Ser775Thr	p.S775T	ENST00000369303	NM_004440.3	775	Tca/Aca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8507405	8507405	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	31	527	0	ENST00000356435.5:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000356435		525	Gaa/Taa																																																																														
RAC1	0	MSKCC	GRCh37	7	6426893	6426893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	286	618	0	ENST00000356142.4:c.86C>T	p.Pro29Leu	p.P29L	ENST00000356142	NM_018890.3	29	cCt/cTt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	247	646	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
CD79B	0	MSKCC	GRCh37	17	62007475	62007475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	210	616	0	ENST00000392795.3:c.392C>T	p.Ser131Leu	p.S131L	ENST00000392795	NM_001039933.1	131	tCg/tTg																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056533	26056533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	110	300	0	ENST00000343677.2:c.124G>C	p.Glu42Gln	p.E42Q	ENST00000343677	NM_005319.3	42	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0018885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	402	1049	1	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
KMT2D	0	MSKCC	GRCh37	12	49427588	49427588	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	137	448	0	ENST00000301067.7:c.10900C>T	p.Gln3634Ter	p.Q3634*	ENST00000301067	NM_003482.3	3634	Cag/Tag																																																																														
FAT1	0	MSKCC	GRCh37	4	187584479	187584479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	188	451	0	ENST00000441802.2:c.3554G>A	p.Gly1185Glu	p.G1185E	ENST00000441802	NM_005245.3	1185	gGa/gAa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589550	67589552	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0018885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	131	390	0	ENST00000274335.5:c.1317_1319delAGA	p.Glu439del	p.E439del	ENST00000274335		438	aAAGaa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	285	616	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94201025	94201025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	41	487	1	ENST00000323929.3:c.1052G>A	p.Arg351His	p.R351H	ENST00000323929	NM_005591.3	351	cGt/cAt																																																																														
ALK	0	MSKCC	GRCh37	2	29450538	29450538	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0018888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	63	607	0	ENST00000389048.3:c.2816G>C	p.Gly939Ala	p.G939A	ENST00000389048	NM_004304.4	939	gGc/gCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	230	511	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	224	797	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																																																														
GATA3	0	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	223	634	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	149	457	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137033	64137033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	268	816	0	ENST00000334205.4:c.1544C>T	p.Ser515Leu	p.S515L	ENST00000334205	NM_003942.2	515	tCg/tTg																																																																														
RECQL	0	MSKCC	GRCh37	12	21644597	21644597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	236	655	0	ENST00000421138.2:c.70C>G	p.Gln24Glu	p.Q24E	ENST00000421138		24	Caa/Gaa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916932	178916932	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	235	694	0	ENST00000263967.3:c.319A>T	p.Asn107Tyr	p.N107Y	ENST00000263967	NM_006218.2	107	Aac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1349	119	1278	0	ENST00000269305.4:c.394A>C	p.Lys132Gln	p.K132Q	ENST00000269305	NM_001126112.2	132	Aag/Cag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	40	684	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	40	684	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	57	917	0	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																														
MED12	0	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	89	534	0	ENST00000374080.3:c.131G>T	p.Gly44Val	p.G44V	ENST00000374080		44	gGt/gTt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413085	139413085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	51	875	0	ENST00000277541.6:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000277541	NM_017617.3	353	Cgt/Tgt																																																																														
NF1	0	MSKCC	GRCh37	17	29670106	29670106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	61	916	0	ENST00000358273.4:c.7142A>G	p.Asn2381Ser	p.N2381S	ENST00000358273	NM_001042492.2	2381	aAt/aGt																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971051	21971065	+	inframe_deletion	In_Frame_Del	DEL	GCGCCCCGGCCCGGT	GCGCCCCGGCCCGGT	-			P-0018892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	103	647	0	ENST00000304494.5:c.293_307del	p.His98_Ala102del	p.H98_A102del	ENST00000304494	NM_000077.4	98	cACCGGGCCGGGGCGCgg/cgg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971051	21971065	+	inframe_deletion	In_Frame_Del	DEL	GCGCCCCGGCCCGGT	GCGCCCCGGCCCGGT	-			P-0018892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	103	647	0	ENST00000304494.5:c.293_307del	p.His98_Ala102del	p.H98_A102del	ENST00000304494	NM_000077.4	98	cACCGGGCCGGGGCGCgg/cgg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139440177	139440177	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	23	200	1	ENST00000277541.6:c.61+1G>A		p.X21_splice	ENST00000277541	NM_017617.3	21																																																																															
AR	0	MSKCC	GRCh37	X	66942669	66942669	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0018892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	37	391	0	ENST00000374690.3:c.2450T>C	p.Ile817Thr	p.I817T	ENST00000374690	NM_000044.3	817	aTt/aCt																																																																														
KDR	3791	MSKCC	GRCh37	4	55953837	55953837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	52	548	1	ENST00000263923.4:c.3599C>T	p.Ser1200Phe	p.S1200F	ENST00000263923	NM_002253.2	1200	tCc/tTc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12011144	12011144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	108	423	0	ENST00000353533.5:c.551C>T	p.Ser184Leu	p.S184L	ENST00000353533	NM_003010.3	184	tCg/tTg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591135	67591137	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0018893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	108	351	0	ENST00000274335.5:c.1728_1730delGAG	p.Arg577del	p.R577del	ENST00000274335		576	acGAGa/aca																																																																														
PTEN	0	MSKCC	GRCh37	10	89653835	89653841	+	frameshift_variant	Frame_Shift_Del	DEL	GTATACA	GTATACA	-			P-0018893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	106	460	0	ENST00000371953.3:c.134_140del	p.Val45GlyfsTer7	p.V45Gfs*7	ENST00000371953	NM_000314.4	45	GTATACAgg/gg																																																																														
CDK4	0	MSKCC	GRCh37	12	58145064	58145064	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	185	562	0	ENST00000257904.6:c.280G>C	p.Glu94Gln	p.E94Q	ENST00000257904	NM_000075.3	94	Gag/Cag																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457707	67457707	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	186	602	0	ENST00000327367.4:c.517C>G	p.Gln173Glu	p.Q173E	ENST00000327367	NM_005902.3	173	Cag/Gag																																																																														
IGF1R	0	MSKCC	GRCh37	15	99465381	99465381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	132	471	0	ENST00000268035.6:c.2206G>A	p.Glu736Lys	p.E736K	ENST00000268035	NM_000875.3	736	Gaa/Aaa																																																																														
CDH1	0	MSKCC	GRCh37	16	68856130	68856130	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0018893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	155	530	0	ENST00000261769.5:c.1936+2T>A		p.X646_splice	ENST00000261769	NM_004360.3	646																																																																															
CARM1	0	MSKCC	GRCh37	19	11030588	11030588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	207	659	0	ENST00000327064.4:c.1142C>T	p.Ser381Leu	p.S381L	ENST00000327064	NM_199141.1	381	tCa/tTa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36218500	36218500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	101	459	0	ENST00000222270.7:c.4279G>A	p.Gly1427Ser	p.G1427S	ENST00000222270	NM_014727.1	1427	Ggc/Agc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36253005	36253006	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	141	517	1	ENST00000300305.3:c.356dup	p.Ala120GlyfsTer18	p.A120Gfs*18	ENST00000300305		119	gtg/gtTg																																																																														
MST1R	0	MSKCC	GRCh37	3	49940022	49940022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	211	734	3	ENST00000296474.3:c.1021G>A	p.Glu341Lys	p.E341K	ENST00000296474	NM_002447.2	341	Gag/Aag																																																																														
KLF4	0	MSKCC	GRCh37	9	110250442	110250442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	116	552	0	ENST00000374672.4:c.233G>C	p.Gly78Ala	p.G78A	ENST00000374672	NM_004235.4	78	gGa/gCa																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0018894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	162	515	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
CBFB	0	MSKCC	GRCh37	16	67063321	67063322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	135	401	0	ENST00000412916.2:c.11_12insA	p.Val5ArgfsTer15	p.V5Rfs*15	ENST00000412916		4	gtc/gtAc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	61	582	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0018895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	87	779	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
TP53	0	MSKCC	GRCh37	17	7576862	7576862	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	188	710	1	ENST00000269305.4:c.984del	p.Phe328LeufsTer17	p.F328Lfs*17	ENST00000269305	NM_001126112.2	328	ttC/tt																																																																														
AURKA	0	MSKCC	GRCh37	20	54961459	54961459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	53	333	0	ENST00000312783.6:c.173C>G	p.Pro58Arg	p.P58R	ENST00000312783	NM_198436.1	58	cCt/cGt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164829	36164829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	103	904	0	ENST00000300305.3:c.1046A>G	p.Tyr349Cys	p.Y349C	ENST00000300305		349	tAt/tGt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55161421	55161421	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	95	556	0	ENST00000257290.5:c.3253del	p.Glu1085LysfsTer40	p.E1085Kfs*40	ENST00000257290	NM_006206.4	1084	gtG/gt																																																																														
IRS1	0	MSKCC	GRCh37	2	227662481	227662481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	68	446	2	ENST00000305123.5:c.974G>A	p.Arg325His	p.R325H	ENST00000305123	NM_005544.2	325	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	162	755	0	ENST00000269305.4:c.747G>C	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agC																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88651985	88651988	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAGT	AAGT	-			P-0018897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	44	507	0	ENST00000372037.3:c.333+2_333+5del		p.X111_splice	ENST00000372037	NM_004329.2	111																																																																															
MDC1	0	MSKCC	GRCh37	6	30672764	30672764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	66	760	0	ENST00000376406.3:c.4196C>T	p.Ser1399Phe	p.S1399F	ENST00000376406	NM_014641.2	1399	tCc/tTc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157510861	157510862	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	115	876	0	ENST00000346085.5:c.3638dup	p.Thr1214TyrfsTer32	p.T1214Yfs*32	ENST00000346085	NM_020732.3	1212	-/C																																																																														
EGFR	0	MSKCC	GRCh37	7	55242470	55242494	+	protein_altering_variant	In_Frame_Del	DEL	TAAGAGAAGCAACATCTCCGAAAGC	TAAGAGAAGCAACATCTCCGAAAGC	CGAAAGA			P-0018897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	148	889	0	ENST00000275493.2:c.2240_2264delinsCGAAAGA	p.Leu747_Ala755delinsSerLysAsp	p.L747_A755delinsSKD	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCCGAAAGCc/tCGAAAGAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0018898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	107	529	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TSC1	0	MSKCC	GRCh37	9	135797301	135797301	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	77	394	0	ENST00000298552.3:c.568del	p.Arg190AlafsTer20	p.R190Afs*20	ENST00000298552	NM_001162426.1	190	Cgc/gc																																																																														
NF1	0	MSKCC	GRCh37	17	29664868	29664868	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	307	518	1	ENST00000358273.4:c.6674G>A	p.Trp2225Ter	p.W2225*	ENST00000358273	NM_001042492.2	2225	tGg/tAg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981797	201981797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	303	960	1	ENST00000359651.3:c.508C>A	p.Leu170Met	p.L170M	ENST00000359651		170	Ctg/Atg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88679247	88679247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	74	921	0	ENST00000360948.2:c.790C>T	p.His264Tyr	p.H264Y	ENST00000360948	NM_001012338.2	264	Cat/Tat																																																																														
TP53	0	MSKCC	GRCh37	17	7573995	7573996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	470	1051	3	ENST00000269305.4:c.1031dup	p.Asn345GlufsTer2	p.N345Efs*2	ENST00000269305	NM_001126112.2	344	ctg/ctTg																																																																														
LATS2	0	MSKCC	GRCh37	13	21562114	21562157	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGCGTATGGCGAGTAGCTCTTGATGCGTGACTCTCTCTTCTC	AAGGCGTATGGCGAGTAGCTCTTGATGCGTGACTCTCTCTTCTC	GAG			P-0018903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1664	336	1288	6	ENST00000382592.4:c.1762_1805delinsCTC	p.Glu588LeufsTer2	p.E588Lfs*2	ENST00000382592	NM_014572.2	588	GAGAAGAGAGAGTCACGCATCAAGAGCTACTCGCCATACGCCTTt/CTCt																																																																														
STK11	0	MSKCC	GRCh37	19	1219412	1219412	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0018903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	105	443	0	ENST00000326873.7:c.464G>A	p.Gly155Glu	p.G155E	ENST00000326873	NM_000455.4	155	gGg/gAg																																																																														
NF2	0	MSKCC	GRCh37	22	30057270	30057270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	376	690	0	ENST00000338641.4:c.756delC	p.Lys253ArgfsTer43	p.K253Rfs*43	ENST00000338641	NM_000268.3	251	aCc/ac																																																																														
TP53	0	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	336	358	0	ENST00000269305.4:c.559G>A	p.Gly187Ser	p.G187S	ENST00000269305	NM_001126112.2	187	Ggt/Agt																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430635	78430635	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	531	517	0	ENST00000370768.2:c.655del	p.Met219TrpfsTer3	p.M219Wfs*3	ENST00000370768	NM_003902.3	219	Atg/tg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	60	476	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	95	547	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	63	643	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	114	792	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PTPRS	0	MSKCC	GRCh37	19	5240233	5240233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	74	708	1	ENST00000357368.4:c.1681C>T	p.Arg561Trp	p.R561W	ENST00000357368	NM_002850.3	561	Cgg/Tgg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852659	63852659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	91	489	1	ENST00000279873.7:c.3437C>T	p.Ala1146Val	p.A1146V	ENST00000279873	NM_032199.2	1146	gCg/gTg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12011192	12011192	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	76	342	0	ENST00000353533.5:c.600del	p.Pro201GlnfsTer5	p.P201Qfs*5	ENST00000353533	NM_003010.3	200	aTt/at																																																																														
PTPRS	0	MSKCC	GRCh37	19	5219432	5219432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1087	59	584	2	ENST00000357368.4:c.3812C>T	p.Pro1271Leu	p.P1271L	ENST00000357368	NM_002850.3	1271	cCg/cTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224024	36224024	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1537	167	825	0	ENST00000222270.7:c.6574A>G	p.Ile2192Val	p.I2192V	ENST00000222270	NM_014727.1	2192	Ata/Gta																																																																														
MDM2	0	MSKCC	GRCh37	12	69230468	69230468	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	39	417	0	ENST00000462284.1:c.857T>C	p.Val286Ala	p.V286A	ENST00000462284	NM_002392.5	286	gTg/gCg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133923	38133923	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1296	117	857	0	ENST00000317025.8:c.3963A>C	p.Glu1321Asp	p.E1321D	ENST00000317025	NM_023034.1	1321	gaA/gaC																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	444	543	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
SOX17	0	MSKCC	GRCh37	8	55371633	55371633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	207	492	0	ENST00000297316.4:c.323C>T	p.Ala108Val	p.A108V	ENST00000297316	NM_022454.3	108	gCg/gTg																																																																														
MDC1	0	MSKCC	GRCh37	6	30675463	30675463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	190	519	0	ENST00000376406.3:c.2893C>T	p.Pro965Ser	p.P965S	ENST00000376406	NM_014641.2	965	Cca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	87	676	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438204	49438204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	150	644	2	ENST00000301067.7:c.5065C>T	p.Arg1689Cys	p.R1689C	ENST00000301067	NM_003482.3	1689	Cgt/Tgt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986603	36986652	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCGCCAGGTCCGGAGACTGGCCTGCGCTGCCTGGCTGGTGGCCCGGGT	GTGCGCCAGGTCCGGAGACTGGCCTGCGCTGCCTGGCTGGTGGCCCGGGT	-			P-0018923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	45	356	1	ENST00000354822.5:c.1037_1086del	p.His346ProfsTer76	p.H346Pfs*76	ENST00000354822	NM_001079668.2	346	cACCCGGGCCACCAGCCAGGCAGCGCAGGCCAGTCTCCGGACCTGGCGCAC/c																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986805	36986808	+	frameshift_variant	Frame_Shift_Del	DEL	TTCA	TTCA	-			P-0018923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	55	288	0	ENST00000354822.5:c.881_884del	p.Val294GlufsTer86	p.V294Efs*86	ENST00000354822	NM_001079668.2	294	gTGAAa/ga																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39609305	39609305	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	56	365	0	ENST00000262039.4:c.1607G>C	p.Arg536Thr	p.R536T	ENST00000262039	NM_002647.2	536	aGa/aCa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141498	11141498	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	163	822	5	ENST00000344626.4:c.3480delG	p.Leu1161SerfsTer3	p.L1161Sfs*3	ENST00000344626	NM_003072.3	1159	Ggg/gg																																																																														
NSD1	0	MSKCC	GRCh37	5	176638491	176638491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	74	841	0	ENST00000439151.2:c.3091C>T	p.Arg1031Ter	p.R1031*	ENST00000439151	NM_022455.4	1031	Cga/Tga																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	70	782	0	ENST00000344626.4:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000344626	NM_003072.3	882	Gaa/Aaa																																																																														
POLE	0	MSKCC	GRCh37	12	133214706	133214706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	45	521	0	ENST00000320574.5:c.5572C>T	p.Arg1858Cys	p.R1858C	ENST00000320574	NM_006231.2	1858	Cgc/Tgc																																																																														
MLH1	0	MSKCC	GRCh37	3	37035147	37035147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	67	438	0	ENST00000231790.2:c.109G>C	p.Glu37Gln	p.E37Q	ENST00000231790	NM_000249.3	37	Gag/Cag																																																																														
RARA	0	MSKCC	GRCh37	17	38508273	38508273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	79	770	2	ENST00000254066.5:c.581C>T	p.Ala194Val	p.A194V	ENST00000254066	NM_000964.3	194	gCg/gTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421039	49421039	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	104	448	0	ENST00000301067.7:c.14710C>T	p.Arg4904Ter	p.R4904*	ENST00000301067	NM_003482.3	4904	Cga/Tga																																																																														
CSDE1	0	MSKCC	GRCh37	1	115280669	115280671	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	52	774	1	ENST00000438362.2:c.360_362del	p.Ser121del	p.S121del	ENST00000438362	NM_001242891.1	120	tcATCg/tcg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118354911	118354911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	51	746	0	ENST00000534358.1:c.4100C>T	p.Pro1367Leu	p.P1367L	ENST00000534358	NM_005933.3	1367	cCg/cTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376683	118376683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149340870		P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	67	757	1	ENST00000534358.1:c.10076C>T	p.Ala3359Val	p.A3359V	ENST00000534358	NM_005933.3	3359	gCg/gTg																																																																														
TBX3	0	MSKCC	GRCh37	12	115109968	115109968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	64	813	0	ENST00000257566.3:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000257566	NM_016569.3	637	cGg/cAg																																																																														
TSC2	0	MSKCC	GRCh37	16	2129400	2129400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	44	634	1	ENST00000219476.3:c.3259del	p.Glu1087SerfsTer16	p.E1087Sfs*16	ENST00000219476	NM_000548.3	1085	tcG/tc																																																																														
MALT1	0	MSKCC	GRCh37	18	56390435	56390435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	47	451	1	ENST00000348428.3:c.1174C>T	p.Arg392Cys	p.R392C	ENST00000348428	NM_006785.3	392	Cgt/Tgt																																																																														
UPF1	0	MSKCC	GRCh37	19	18966816	18966816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	106	872	2	ENST00000262803.5:c.1627C>T	p.Arg543Cys	p.R543C	ENST00000262803	NM_002911.3	543	Cgc/Tgc																																																																														
KIT	0	MSKCC	GRCh37	4	55593489	55593489	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	71	478	0	ENST00000288135.5:c.1646A>G	p.Gln549Arg	p.Q549R	ENST00000288135	NM_000222.2	549	cAg/cGg																																																																														
ROS1	0	MSKCC	GRCh37	6	117687407	117687407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	78	555	0	ENST00000368508.3:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000368508	NM_002944.2	882	Gaa/Aaa																																																																														
CARD11	0	MSKCC	GRCh37	7	2962391	2962391	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	50	632	0	ENST00000396946.4:c.2146G>T	p.Glu716Ter	p.E716*	ENST00000396946	NM_032415.4	716	Gaa/Taa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151947949	151947949	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	49	654	0	ENST00000262189.6:c.1724T>A	p.Ile575Asn	p.I575N	ENST00000262189	NM_170606.2	575	aTt/aAt																																																																														
AGO2	0	MSKCC	GRCh37	8	141572610	141572610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	67	691	0	ENST00000220592.5:c.460G>A	p.Val154Ile	p.V154I	ENST00000220592	NM_012154.3	154	Gtc/Atc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223862	53223862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	89	527	1	ENST00000375401.3:c.3497G>A	p.Arg1166His	p.R1166H	ENST00000375401	NM_004187.3	1166	cGc/cAc																																																																														
VHL	0	MSKCC	GRCh37	3	10188197	10188197	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0018929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	199	598	0	ENST00000256474.2:c.341-1G>T		p.X114_splice	ENST00000256474	NM_000551.3	114																																																																															
PBRM1	0	MSKCC	GRCh37	3	52610665	52610666	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	C			P-0018929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	152	596	0	ENST00000394830.3:c.3507_3508delinsG	p.Ile1170SerfsTer23	p.I1170Sfs*23	ENST00000394830	NM_018313.4	1169	ccCAtc/ccGtc																																																																														
NF2	0	MSKCC	GRCh37	22	30054241	30054241	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	90	498	0	ENST00000338641.4:c.663C>G	p.Tyr221Ter	p.Y221*	ENST00000338641	NM_000268.3	221	taC/taG																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391192	89391192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	113	489	0	ENST00000336596.2:c.1258T>C	p.Ser420Pro	p.S420P	ENST00000336596	NM_005233.5	420	Tcc/Ccc																																																																														
LATS1	0	MSKCC	GRCh37	6	150005417	150005417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	81	461	1	ENST00000253339.5:c.808C>A	p.Pro270Thr	p.P270T	ENST00000253339		270	Cca/Aca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	519	755	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508176	106508176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	104	207	0	ENST00000359195.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000359195	NM_002649.2	57	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	263	738	1	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18277104	18277104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	141	465	0	ENST00000222254.8:c.1551G>C	p.Glu517Asp	p.E517D	ENST00000222254	NM_005027.3	517	gaG/gaC																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279579	18279579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	666	752	2	ENST00000222254.8:c.1852G>A	p.Glu618Lys	p.E618K	ENST00000222254	NM_005027.3	618	Gag/Aag																																																																														
ALK	0	MSKCC	GRCh37	2	29606727	29606727	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	92	516	0	ENST00000389048.3:c.1155-2A>T		p.X385_splice	ENST00000389048	NM_004304.4	385																																																																															
ACVR1	0	MSKCC	GRCh37	2	158634645	158634645	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	112	323	0	ENST00000263640.3:c.541G>T	p.Ala181Ser	p.A181S	ENST00000263640	NM_001105.4	181	Gca/Tca																																																																														
MITF	0	MSKCC	GRCh37	3	69990439	69990439	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	83	551	1	ENST00000352241.4:c.719A>T	p.Glu240Val	p.E240V	ENST00000352241	NM_198159.2	240	gAa/gTa																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056646	26056646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	13	242	1	ENST00000343677.2:c.11C>T	p.Thr4Ile	p.T4I	ENST00000343677	NM_005319.3	4	aCt/aTt																																																																														
ATRX	0	MSKCC	GRCh37	X	76777824	76777824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	265	811	0	ENST00000373344.5:c.6892C>T	p.Pro2298Ser	p.P2298S	ENST00000373344	NM_000489.3	2298	Ccc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	61	497	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	131	801	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	57	548	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
BRCA1	0	MSKCC	GRCh37	17	41276047	41276047	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	41	611	0	ENST00000357654.3:c.67G>C	p.Glu23Gln	p.E23Q	ENST00000357654	NM_007294.3	23	Gag/Cag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877391	40877391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	129	616	0	ENST00000373198.4:c.2305G>A	p.Val769Met	p.V769M	ENST00000373198	NM_133170.3	769	Gtg/Atg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099442	27099442	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	102	530	0	ENST00000324856.7:c.3679G>T	p.Glu1227Ter	p.E1227*	ENST00000324856	NM_006015.4	1227	Gag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108186556	108186556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	16	285	0	ENST00000278616.4:c.6013C>G	p.Leu2005Val	p.L2005V	ENST00000278616	NM_000051.3	2005	Ctc/Gtc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435626	18435626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	19	517	0	ENST00000266497.5:c.611C>G	p.Ser204Cys	p.S204C	ENST00000266497		204	tCt/tGt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436007	49436007	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	43	507	0	ENST00000301067.7:c.5974G>T	p.Glu1992Ter	p.E1992*	ENST00000301067	NM_003482.3	1992	Gag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445035	49445035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	36	530	0	ENST00000301067.7:c.2431G>C	p.Glu811Gln	p.E811Q	ENST00000301067	NM_003482.3	811	Gag/Cag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445891	49445891	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	107	912	0	ENST00000301067.7:c.1575G>C	p.Glu525Asp	p.E525D	ENST00000301067	NM_003482.3	525	gaG/gaC																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446133	49446133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	68	778	0	ENST00000301067.7:c.1333G>A	p.Glu445Lys	p.E445K	ENST00000301067	NM_003482.3	445	Gag/Aag																																																																														
DICER1	0	MSKCC	GRCh37	14	95584069	95584069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	37	536	0	ENST00000343455.3:c.1399C>G	p.Gln467Glu	p.Q467E	ENST00000343455	NM_177438.2	467	Caa/Gaa																																																																														
MGA	0	MSKCC	GRCh37	15	42000395	42000395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	49	432	0	ENST00000219905.7:c.2414C>G	p.Ser805Cys	p.S805C	ENST00000219905	NM_001164273.1	805	tCt/tGt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43712637	43712637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	87	798	1	ENST00000382044.4:c.4547G>A	p.Gly1516Glu	p.G1516E	ENST00000382044	NM_001141980.1	1516	gGa/gAa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144089	11144089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	68	741	2	ENST00000344626.4:c.3670G>A	p.Val1224Met	p.V1224M	ENST00000344626	NM_003072.3	1224	Gtg/Atg																																																																														
BABAM1	0	MSKCC	GRCh37	19	17387689	17387689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	61	620	0	ENST00000359435.4:c.757G>A	p.Glu253Lys	p.E253K	ENST00000359435	NM_001033549.1	253	Gag/Aag																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182683491	182683491	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	32	697	0	ENST00000292782.4:c.54C>G	p.Phe18Leu	p.F18L	ENST00000292782	NM_020640.2	18	ttC/ttG																																																																														
FBXW7	0	MSKCC	GRCh37	4	153271242	153271242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	26	492	0	ENST00000281708.4:c.536G>T	p.Arg179Leu	p.R179L	ENST00000281708	NM_033632.3	179	cGc/cTc																																																																														
IL7R	0	MSKCC	GRCh37	5	35876479	35876479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	78	667	0	ENST00000303115.3:c.1271G>A	p.Gly424Glu	p.G424E	ENST00000303115	NM_002185.3	424	gGa/gAa																																																																														
IRF4	0	MSKCC	GRCh37	6	393194	393194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	39	509	0	ENST00000380956.4:c.42G>C	p.Met14Ile	p.M14I	ENST00000380956	NM_001195286.1	14	atG/atC																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874781	151874781	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	94	352	0	ENST00000262189.6:c.7757C>G	p.Ser2586Cys	p.S2586C	ENST00000262189	NM_170606.2	2586	tCt/tGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151876936	151876936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	33	456	0	ENST00000262189.6:c.7425G>A	p.Met2475Ile	p.M2475I	ENST00000262189	NM_170606.2	2475	atG/atA																																																																														
GNAQ	0	MSKCC	GRCh37	9	80343433	80343433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	30	357	0	ENST00000286548.4:c.886G>C	p.Asp296His	p.D296H	ENST00000286548	NM_002072.3	296	Gat/Cat																																																																														
AR	0	MSKCC	GRCh37	X	66765746	66765746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	45	446	0	ENST00000374690.3:c.758C>G	p.Ala253Gly	p.A253G	ENST00000374690	NM_000044.3	253	gCg/gGg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	239	501	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187549458	187549458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	258	535	0	ENST00000441802.2:c.4660G>C	p.Asp1554His	p.D1554H	ENST00000441802	NM_005245.3	1554	Gac/Cac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	338	654	0	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420460	49420460	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	286	570	1	ENST00000301067.7:c.15289C>T	p.Arg5097Ter	p.R5097*	ENST00000301067	NM_003482.3	5097	Cga/Tga																																																																														
WT1	0	MSKCC	GRCh37	11	32456342	32456342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	335	751	0	ENST00000332351.3:c.550C>G	p.Pro184Ala	p.P184A	ENST00000332351	NM_024426.4	184	Ccg/Gcg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49422906	49422906	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	322	665	1	ENST00000301067.7:c.14189G>A	p.Trp4730Ter	p.W4730*	ENST00000301067	NM_003482.3	4730	tGg/tAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859199	151859200	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0018941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	163	384	0	ENST00000262189.6:c.11460+2dup		p.X3820_splice	ENST00000262189	NM_170606.2	3820																																																																															
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	591	719	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32968886	32968886	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	697	536	1	ENST00000380152.3:c.9317G>A	p.Trp3106Ter	p.W3106*	ENST00000380152		3106	tGg/tAg																																																																														
RARA	0	MSKCC	GRCh37	17	38487646	38487646	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0018944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	164	634	0	ENST00000254066.5:c.176C>A	p.Ala59Asp	p.A59D	ENST00000254066	NM_000964.3	59	gCc/gAc																																																																														
MSI2	0	MSKCC	GRCh37	17	55339452	55339574	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCATATATTTTTTCCTTAAAGTACTTTATTGACTCCTGCTTTTCTATTTTTTTTCCCAGATTGACCCCAAAGTTGCATTTCCTCGTCGAGCGCAACCCAAGGTAAGTAGGAGAATAAACAGT	ATCATATATTTTTTCCTTAAAGTACTTTATTGACTCCTGCTTTTCTATTTTTTTTCCCAGATTGACCCCAAAGTTGCATTTCCTCGTCGAGCGCAACCCAAGGTAAGTAGGAGAATAAACAGT	-			P-0018944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	45	318	0	ENST00000284073.2:c.271-59_312+22del		p.X91_splice	ENST00000284073	NM_138962.2	91																																																																															
RRAS	0	MSKCC	GRCh37	19	50143208	50143208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	236	764	0	ENST00000246792.3:c.148A>G	p.Ile50Val	p.I50V	ENST00000246792	NM_006270.3	50	Atc/Gtc																																																																														
KMT2C	0	MSKCC	GRCh37	7	152012305	152012326	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTAGAAGGTTGGTTTCTCCA	TGTTAGAAGGTTGGTTTCTCCA	-			P-0018944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	436	616	0	ENST00000262189.6:c.487_508del	p.Trp163ArgfsTer36	p.W163Rfs*36	ENST00000262189	NM_170606.2	163	TGGAGAAACCAACCTTCTAACAag/ag																																																																														
KMT2C	0	MSKCC	GRCh37	7	152012348	152012348	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	479	643	1	ENST00000262189.6:c.465A>G	p.Ile155Met	p.I155M	ENST00000262189	NM_170606.2	155	atA/atG																																																																														
BRCA2	0	MSKCC	GRCh37	13	32968887	32968888	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	AC			P-0018944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	539	273	1	ENST00000380152.3:c.9318_9319delinsAC	p.Trp3106_Ile3107delinsTer	p.W3106_I3107delins*	ENST00000380152		3106	tgGAta/tgACta																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	437	761	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	242	438	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101138	27101138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	254	881	1	ENST00000324856.7:c.4420C>T	p.Gln1474Ter	p.Q1474*	ENST00000324856	NM_006015.4	1474	Caa/Taa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	156	527	1	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																															
ATM	0	MSKCC	GRCh37	11	108186554	108186554	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	83	354	0	ENST00000278616.4:c.6011T>G	p.Leu2004Arg	p.L2004R	ENST00000278616	NM_000051.3	2004	cTt/cGt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43701204	43701204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	230	778	0	ENST00000382044.4:c.5491G>T	p.Val1831Leu	p.V1831L	ENST00000382044	NM_001141980.1	1831	Gtg/Ttg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99459975	99459975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	143	656	0	ENST00000268035.6:c.2071G>C	p.Val691Leu	p.V691L	ENST00000268035	NM_000875.3	691	Gtg/Ctg																																																																														
STK11	0	MSKCC	GRCh37	19	1223103	1223103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	234	787	0	ENST00000326873.7:c.1040C>T	p.Ala347Val	p.A347V	ENST00000326873	NM_000455.4	347	gCg/gTg																																																																														
ROS1	0	MSKCC	GRCh37	6	117658490	117658490	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	197	753	0	ENST00000368508.3:c.5093A>G	p.Glu1698Gly	p.E1698G	ENST00000368508	NM_002944.2	1698	gAg/gGg																																																																														
PARK2	0	MSKCC	GRCh37	6	162683741	162683741	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	198	681	0	ENST00000366898.1:c.228del	p.Gly77ValfsTer4	p.G77Vfs*4	ENST00000366898	NM_004562.2	76	aaA/aa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509250	106509250	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	223	737	0	ENST00000359195.3:c.1244A>C	p.Glu415Ala	p.E415A	ENST00000359195	NM_002649.2	415	gAg/gCg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145736935	145736936	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1373	196	714	0	ENST00000428558.2:c.3505dup	p.Ser1169LysfsTer58	p.S1169Kfs*58	ENST00000428558	NM_004260.3	1169	agc/aAgc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518393	8518393	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	69	304	0	ENST00000356435.5:c.998A>T	p.Glu333Val	p.E333V	ENST00000356435		333	gAg/gTg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87570385	87570385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	231	835	1	ENST00000277120.3:c.2125G>A	p.Gly709Arg	p.G709R	ENST00000277120		709	Ggg/Agg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	174	831	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	348	683	1	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	91	400	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	182	793	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	215	734	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249453	153249453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	166	814	1	ENST00000281708.4:c.1325C>T	p.Thr442Ile	p.T442I	ENST00000281708	NM_033632.3	442	aCa/aTa																																																																														
ATM	0	MSKCC	GRCh37	11	108141874	108141874	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	116	524	1	ENST00000278616.4:c.2921+1G>A		p.X974_splice	ENST00000278616	NM_000051.3	974																																																																															
TCF7L2	0	MSKCC	GRCh37	10	114903733	114903733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	201	848	2	ENST00000543371.1:c.737C>T	p.Ser246Leu	p.S246L	ENST00000543371	NM_001198531.1	246	tCg/tTg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	121	510	2	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																															
SMAD4	0	MSKCC	GRCh37	18	48604790	48605164	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	GAAGTACTTCATACCATGCCGATTGCAGACCCACAACCTTTAGACTGAGGTCTTTTACCGTTGGGGCCCTTAACCTTATCAGGATGGTGGACTACAAAATACAATCCTGTTTATAATCTGAAGATATATTTCACTTTTGTTCTGCTTTATCTTTTCATAAAGGGTTGAAAATGTGTTTGCTGCCTTGCTCCTAGCAGACAGAAACTGGATTAAAACAATTTTTTTTTTCCTCTTCAGAACTTGTCAGGCATGGCTCAGAGCTTGAAGATTAGGAGAAACACATTCTTATTAATTCTTCACCTGTTATGTATGAAGGAATCATTCCAGTGCTAGAAAATTTAGCCCTTTAAAACGTCTTAGAGCCTTTTATCTGCA	GAAGTACTTCATACCATGCCGATTGCAGACCCACAACCTTTAGACTGAGGTCTTTTACCGTTGGGGCCCTTAACCTTATCAGGATGGTGGACTACAAAATACAATCCTGTTTATAATCTGAAGATATATTTCACTTTTGTTCTGCTTTATCTTTTCATAAAGGGTTGAAAATGTGTTTGCTGCCTTGCTCCTAGCAGACAGAAACTGGATTAAAACAATTTTTTTTTTCCTCTTCAGAACTTGTCAGGCATGGCTCAGAGCTTGAAGATTAGGAGAAACACATTCTTATTAATTCTTCACCTGTTATGTATGAAGGAATCATTCCAGTGCTAGAAAATTTAGCCCTTTAAAACGTCTTAGAGCCTTTTATCTGCA	-			P-0018949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	113	639	0	ENST00000342988.3:c.1615_*330delGTACTTCATACCATGCCGATTGCAGACCCACAACCTTTAGACTGAGGTCTTTTACCGTTGGGGCCCTTAACCTTATCAGGATGGTGGACTACAAAATACAATCCTGTTTATAATCTGAAGATATATTTCACTTTTGTTCTGCTTTATCTTTTCATAAAGGGTTGAAAATGTGTTTGCTGCCTTGCTCCTAGCAGACAGAAACTGGATTAAAACAATTTTTTTTTTCCTCTTCAGAACTTGTCAGGCATGGCTCAGAGCTTGAAGATTAGGAGAAACACATTCTTATTAATTCTTCACCTGTTATGTATGAAGGAATCATTCCAGTGCTAGAAAATTTAGCCCTTTAAAACGTCTTAGAGCCTTTTATCTGCAGAA		p.*539*	ENST00000342988	NM_005359.5	538																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0018950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	111	745	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	78	684	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	230	684	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	337	801	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG																																																																														
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	247	588	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	238	623	0	ENST00000263967.3:c.333G>C	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaC																																																																														
CREBBP	0	MSKCC	GRCh37	16	3832751	3832751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	180	555	0	ENST00000262367.5:c.1507C>T	p.Gln503Ter	p.Q503*	ENST00000262367	NM_004380.2	503	Cag/Tag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508682	106508682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	368	759	0	ENST00000359195.3:c.676C>T	p.Arg226Cys	p.R226C	ENST00000359195	NM_002649.2	226	Cgc/Tgc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38944636	38944636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	186	585	2	ENST00000357387.3:c.4825C>T	p.Arg1609Cys	p.R1609C	ENST00000357387	NM_152756.3	1609	Cgt/Tgt																																																																														
FAT1	0	MSKCC	GRCh37	4	187519220	187519220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	322	866	0	ENST00000441802.2:c.12163C>T	p.Pro4055Ser	p.P4055S	ENST00000441802	NM_005245.3	4055	Ccg/Tcg																																																																														
NEGR1	0	MSKCC	GRCh37	1	72076826	72076826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	167	454	0	ENST00000357731.5:c.671C>A	p.Ala224Asp	p.A224D	ENST00000357731	NM_173808.2	224	gCt/gAt																																																																														
NUF2	0	MSKCC	GRCh37	1	163306609	163306609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	202	587	1	ENST00000271452.3:c.406G>A	p.Glu136Lys	p.E136K	ENST00000271452	NM_145697.2	136	Gaa/Aaa																																																																														
H3F3C	0	MSKCC	GRCh37	12	31945006	31945006	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	234	821	0	ENST00000340398.3:c.95C>G	p.Ser32Cys	p.S32C	ENST00000340398	NM_001013699.2	32	tCt/tGt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425503	49425503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	210	736	1	ENST00000301067.7:c.12985C>T	p.Gln4329Ter	p.Q4329*	ENST00000301067	NM_003482.3	4329	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427647	49427647	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	310	475	0	ENST00000301067.7:c.10841C>G	p.Ser3614Ter	p.S3614*	ENST00000301067	NM_003482.3	3614	tCa/tGa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440512	49440512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1236	86	942	2	ENST00000301067.7:c.4298G>A	p.Cys1433Tyr	p.C1433Y	ENST00000301067	NM_003482.3	1433	tGt/tAt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906424	32906424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	1432	616	1	ENST00000380152.3:c.809C>T	p.Ser270Leu	p.S270L	ENST00000380152		270	tCa/tTa																																																																														
DICER1	0	MSKCC	GRCh37	14	95562303	95562303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	227	603	0	ENST00000343455.3:c.4954C>T	p.His1652Tyr	p.H1652Y	ENST00000343455	NM_177438.2	1652	Cat/Tat																																																																														
DICER1	0	MSKCC	GRCh37	14	95562918	95562918	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	181	585	0	ENST00000343455.3:c.4339C>T	p.Gln1447Ter	p.Q1447*	ENST00000343455	NM_177438.2	1447	Cag/Tag																																																																														
BLM	0	MSKCC	GRCh37	15	91326125	91326125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	235	645	0	ENST00000355112.3:c.2629G>A	p.Asp877Asn	p.D877N	ENST00000355112	NM_000057.2	877	Gat/Aat																																																																														
ERBB2	0	MSKCC	GRCh37	17	37883621	37883621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	368	871	0	ENST00000269571.5:c.3233C>A	p.Ser1078Tyr	p.S1078Y	ENST00000269571		1078	tCc/tAc																																																																														
CRKL	0	MSKCC	GRCh37	22	21288096	21288096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	212	588	1	ENST00000354336.3:c.341C>T	p.Ser114Leu	p.S114L	ENST00000354336	NM_005207.3	114	tCa/tTa																																																																														
RAD50	0	MSKCC	GRCh37	5	131923761	131923761	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	183	658	0	ENST00000265335.6:c.1031C>G	p.Ser344Ter	p.S344*	ENST00000265335		344	tCa/tGa																																																																														
RAD50	0	MSKCC	GRCh37	5	131924441	131924441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	178	659	3	ENST00000265335.6:c.1114C>A	p.Gln372Lys	p.Q372K	ENST00000265335		372	Cag/Aag																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522590	176522590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	363	836	2	ENST00000292408.4:c.1687C>T	p.Arg563Trp	p.R563W	ENST00000292408	NM_213647.1	563	Cgg/Tgg																																																																														
POLE	0	MSKCC	GRCh37	12	133254192	133254192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	110	695	1	ENST00000320574.5:c.692G>A	p.Arg231His	p.R231H	ENST00000320574	NM_006231.2	231	cGc/cAc																																																																														
STAT3	0	MSKCC	GRCh37	17	40476776	40476776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	166	896	0	ENST00000264657.5:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000264657	NM_139276.2	518	cGa/cAa																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851406	156851406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	135	961	0	ENST00000524377.1:c.2363C>T	p.Pro788Leu	p.P788L	ENST00000524377	NM_002529.3	788	cCt/cTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89653808	89653808	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	56	634	1	ENST00000371953.3:c.106G>T	p.Gly36Ter	p.G36*	ENST00000371953	NM_000314.4	36	Gga/Tga																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42870093	42870093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0018955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	145	901	0	ENST00000398585.3:c.79del	p.Leu27TyrfsTer14	p.L27Yfs*14	ENST00000398585	NM_001135099.1	27	Cta/ta																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778100	27778100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	50	699	1	ENST00000369163.2:c.249G>T	p.Leu83Phe	p.L83F	ENST00000369163	NM_003536.2	83	ttG/ttT																																																																														
TP53	0	MSKCC	GRCh37	17	7576868	7576868	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	166	695	0	ENST00000269305.4:c.978del	p.Glu326AspfsTer19	p.E326Dfs*19	ENST00000269305	NM_001126112.2	326	gaA/ga																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073667	8073667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	49	439	1	ENST00000377482.5:c.992G>T	p.Arg331Leu	p.R331L	ENST00000377482	NM_018948.3	331	cGc/cTc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828208	72828220	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTTTACTCACA	GGTTTTACTCACA	-			P-0018956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	160	881	1	ENST00000268489.5:c.8361_8373del	p.Val2788TrpfsTer9	p.V2788Wfs*9	ENST00000268489	NM_006885.3	2787	ccTGTGAGTAAAACC/cc																																																																														
XPO1	0	MSKCC	GRCh37	2	61715335	61715335	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	117	979	0	ENST00000401558.2:c.2278T>C	p.Ser760Pro	p.S760P	ENST00000401558	NM_003400.3	760	Tct/Cct																																																																														
IRF4	0	MSKCC	GRCh37	6	393220	393220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	182	655	0	ENST00000380956.4:c.68A>T	p.Lys23Met	p.K23M	ENST00000380956	NM_001195286.1	23	aAg/aTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8376719	8376719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	73	618	0	ENST00000356435.5:c.4394G>T	p.Cys1465Phe	p.C1465F	ENST00000356435		1465	tGt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	288	745	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
SOX9	0	MSKCC	GRCh37	17	70120173	70120173	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	193	464	1	ENST00000245479.2:c.1177del	p.Gln393SerfsTer10	p.Q393Sfs*10	ENST00000245479	NM_000346.3	392	tCc/tc																																																																														
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	62	376	1	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
SESN3	0	MSKCC	GRCh37	11	94918553	94918553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	132	691	1	ENST00000536441.1:c.629G>A	p.Ser210Asn	p.S210N	ENST00000536441	NM_144665.3	210	aGt/aAt																																																																														
APC	0	MSKCC	GRCh37	5	112174266	112174267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	89	493	0	ENST00000257430.4:c.2976dupT	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	992	agt/agTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	101	539	0				ENST00000310581	NM_198253.2																																																																																
RB1	0	MSKCC	GRCh37	13	48916759	48916759	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	105	674	1	ENST00000267163.4:c.289G>T	p.Glu97Ter	p.E97*	ENST00000267163	NM_000321.2	97	Gaa/Taa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	288	858	1	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0018961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	243	1048	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
RASA1	0	MSKCC	GRCh37	5	86564739	86564740	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0018961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	178	773	0	ENST00000274376.6:c.475_476del	p.Leu159GlyfsTer20	p.L159Gfs*20	ENST00000274376	NM_002890.2	157	gaCTct/gact																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056469	26056469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	90	318	0	ENST00000343677.2:c.188A>G	p.Lys63Arg	p.K63R	ENST00000343677	NM_005319.3	63	aAa/aGa																																																																														
MDC1	0	MSKCC	GRCh37	6	30673220	30673220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	63	377	0	ENST00000376406.3:c.3740C>T	p.Ala1247Val	p.A1247V	ENST00000376406	NM_014641.2	1247	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0018962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	218	812	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	232	793	0	ENST00000269305.4:c.332T>G	p.Leu111Arg	p.L111R	ENST00000269305	NM_001126112.2	111	cTg/cGg																																																																														
MSH6	0	MSKCC	GRCh37	2	48027074	48027086	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGGGTGATGTT	TTGGGGTGATGTT	-			P-0018962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	81	536	0	ENST00000234420.5:c.1952_1964del	p.Ile651AsnfsTer8	p.I651Nfs*8	ENST00000234420	NM_000179.2	651	aTTGGGGTGATGTTa/aa																																																																														
IL7R	0	MSKCC	GRCh37	5	35867457	35867457	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	90	612	0	ENST00000303115.3:c.271A>G	p.Ile91Val	p.I91V	ENST00000303115	NM_002185.3	91	Ata/Gta																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	80	650	1	ENST00000304494.5:c.150+1G>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974676	21974676	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0018962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	80	650	1	ENST00000304494.5:c.150+1G>A		p.X50_splice	ENST00000304494	NM_000077.4	50																																																																															
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	161	638	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060983	38060983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	32	867	0	ENST00000250448.2:c.1006G>T	p.Asp336Tyr	p.D336Y	ENST00000250448	NM_004496.3	336	Gac/Tac																																																																														
INPP4B	0	MSKCC	GRCh37	4	143130180	143130180	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0018969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	30	557	0	ENST00000262992.4:c.837-1G>C		p.X279_splice	ENST00000262992	NM_001101669.1	279																																																																															
EGFL7	0	MSKCC	GRCh37	9	139563068	139563068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	33	1876	3	ENST00000308874.7:c.140G>A	p.Arg47His	p.R47H	ENST00000308874		47	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	477	607	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			939	306	1068	2	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																														
SPEN	0	MSKCC	GRCh37	1	16257557	16257557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			579	121	671	0	ENST00000375759.3:c.4822G>A	p.Glu1608Lys	p.E1608K	ENST00000375759	NM_015001.2	1608	Gag/Aag																																																																														
RAD54L	0	MSKCC	GRCh37	1	46740253	46740253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	61	467	2	ENST00000371975.4:c.1733G>T	p.Cys578Phe	p.C578F	ENST00000371975	NM_003579.3	578	tGt/tTt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458521	120458521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	81	534	0	ENST00000256646.2:c.6824C>T	p.Ala2275Val	p.A2275V	ENST00000256646	NM_024408.3	2275	gCt/gTt																																																																														
PARP1	0	MSKCC	GRCh37	1	226564942	226564942	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	104	605	0	ENST00000366794.5:c.1808A>G	p.Gln603Arg	p.Q603R	ENST00000366794	NM_001618.3	603	cAg/cGg																																																																														
RB1	0	MSKCC	GRCh37	13	49050894	49050895	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	119	686	0	ENST00000267163.4:c.2580_2581del	p.Arg861LysfsTer3	p.R861Kfs*3	ENST00000267163	NM_000321.2	860	AAa/a																																																																														
STAT3	0	MSKCC	GRCh37	17	40490749	40490749	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			629	84	425	1	ENST00000264657.5:c.550G>A	p.Asp184Asn	p.D184N	ENST00000264657	NM_139276.2	184	Gac/Aac																																																																														
DNMT1	0	MSKCC	GRCh37	19	10251556	10251556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			624	98	558	0	ENST00000340748.4:c.3376G>A	p.Glu1126Lys	p.E1126K	ENST00000340748		1126	Gag/Aag																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273877	18273877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			789	130	773	0	ENST00000222254.8:c.1210C>T	p.His404Tyr	p.H404Y	ENST00000222254	NM_005027.3	404	Cac/Tac																																																																														
ERF	0	MSKCC	GRCh37	19	42753501	42753501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			872	92	765	0	ENST00000222329.4:c.763G>A	p.Gly255Ser	p.G255S	ENST00000222329	NM_006494.2	255	Ggt/Agt																																																																														
EP300	0	MSKCC	GRCh37	22	41574307	41574307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	118	801	0	ENST00000263253.7:c.6592G>A	p.Gly2198Arg	p.G2198R	ENST00000263253	NM_001429.3	2198	Ggg/Agg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217163	66217163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	104	637	0	ENST00000273854.3:c.2452G>A	p.Asp818Asn	p.D818N	ENST00000273854	NM_004439.5	818	Gac/Aac																																																																														
SDHA	0	MSKCC	GRCh37	5	235278	235278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			866	101	395	0	ENST00000264932.6:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000264932	NM_004168.2	362	Gat/Aat																																																																														
NSD1	0	MSKCC	GRCh37	5	176562555	176562555	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			644	276	645	0	ENST00000439151.2:c.451C>G	p.Leu151Val	p.L151V	ENST00000439151	NM_022455.4	151	Ctg/Gtg																																																																														
MDC1	0	MSKCC	GRCh37	6	30675175	30675175	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	122	644	0	ENST00000376406.3:c.3070G>T	p.Glu1024Ter	p.E1024*	ENST00000376406	NM_014641.2	1024	Gag/Tag																																																																														
STK19	0	MSKCC	GRCh37	6	31939817	31939817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	179	987	0	ENST00000375331.2:c.44G>A	p.Arg15Gln	p.R15Q	ENST00000375331	NM_004197.1	15	cGa/cAa																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652031	36652031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			814	134	857	0	ENST00000244741.5:c.153C>A	p.Phe51Leu	p.F51L	ENST00000244741	NM_000389.4	51	ttC/ttA																																																																														
RAD21	0	MSKCC	GRCh37	8	117864237	117864237	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	65	441	2	ENST00000297338.2:c.1420C>T	p.Gln474Ter	p.Q474*	ENST00000297338	NM_006265.2	474	Cag/Tag																																																																														
JAK2	0	MSKCC	GRCh37	9	5044473	5044473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			793	82	630	0	ENST00000381652.3:c.421G>A	p.Glu141Lys	p.E141K	ENST00000381652	NM_004972.3	141	Gaa/Aaa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139409801	139409801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			821	82	860	1	ENST00000277541.6:c.1955C>T	p.Ser652Leu	p.S652L	ENST00000277541	NM_017617.3	652	tCg/tTg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44879874	44879874	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	68	273	0	ENST00000377967.4:c.463G>T	p.Glu155Ter	p.E155*	ENST00000377967	NM_021140.2	155	Gag/Tag																																																																														
STAG2	0	MSKCC	GRCh37	X	123179194	123179194	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	162	239	0	ENST00000218089.9:c.643T>A	p.Phe215Ile	p.F215I	ENST00000218089	NM_001042749.1	215	Ttt/Att																																																																														
ATM	0	MSKCC	GRCh37	11	108173667	108173667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	52	549	1	ENST00000278616.4:c.5407G>A	p.Asp1803Asn	p.D1803N	ENST00000278616	NM_000051.3	1803	Gac/Aac																																																																														
EPHB1	0	MSKCC	GRCh37	3	134898803	134898803	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018970-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	34	405	0	ENST00000398015.3:c.1861A>C	p.Ile621Leu	p.I621L	ENST00000398015	NM_004441.4	621	Att/Ctt																																																																														
TP53	0	MSKCC	GRCh37	17	7576865	7576865	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	191	546	2	ENST00000269305.4:c.981T>G	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taT/taG																																																																														
ALK	0	MSKCC	GRCh37	2	29455222	29455222	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	90	758	0	ENST00000389048.3:c.2580A>C	p.Arg860Ser	p.R860S	ENST00000389048	NM_004304.4	860	agA/agC																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178947162	178947162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	96	446	0	ENST00000263967.3:c.2598G>T	p.Leu866Phe	p.L866F	ENST00000263967	NM_006218.2	866	ttG/ttT																																																																														
APC	0	MSKCC	GRCh37	5	112157646	112157647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	174	468	0	ENST00000257430.4:c.1369dup	p.Ser457PhefsTer3	p.S457Ffs*3	ENST00000257430	NM_000038.5	456	ctt/cTtt																																																																														
SYK	0	MSKCC	GRCh37	9	93637110	93637110	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	89	841	2	ENST00000375746.1:c.1160A>G	p.Lys387Arg	p.K387R	ENST00000375746	NM_001174167.1	387	aAg/aGg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209370	98209370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	106	796	0	ENST00000331920.6:c.4168G>T	p.Gly1390Trp	p.G1390W	ENST00000331920	NM_000264.3	1390	Ggg/Tgg																																																																														
AMER1	0	MSKCC	GRCh37	X	63411221	63411222	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0018971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	322	930	0	ENST00000330258.3:c.1945_1946del	p.Lys649AlafsTer57	p.K649Afs*57	ENST00000330258	NM_152424.3	649	AAg/g																																																																														
KIT	0	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	269	867	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	247	802	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
FLT3	0	MSKCC	GRCh37	13	28592681	28592681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	327	956	0	ENST00000241453.7:c.2464G>C	p.Gly822Arg	p.G822R	ENST00000241453	NM_004119.2	822	Ggg/Cgg																																																																														
MGA	0	MSKCC	GRCh37	15	42041690	42041691	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0018977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	252	765	0	ENST00000219905.7:c.5885_5886del	p.His1962ArgfsTer18	p.H1962Rfs*18	ENST00000219905	NM_001164273.1	1962	cAT/c																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11101910	11101910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	402	927	3	ENST00000344626.4:c.1330C>T	p.Arg444Cys	p.R444C	ENST00000344626	NM_003072.3	444	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	451	1035	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
TSC1	0	MSKCC	GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	106	926	0	ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt																																																																														
MUTYH	0	MSKCC	GRCh37	1	45797867	45797867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	190	784	0	ENST00000372115.3:c.862G>T	p.Val288Leu	p.V288L	ENST00000372115	NM_001048171.1	288	Gtg/Ttg																																																																														
ARID2	0	MSKCC	GRCh37	12	46211462	46211462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	84	357	0	ENST00000334344.6:c.428G>C	p.Arg143Pro	p.R143P	ENST00000334344	NM_152641.2	143	cGt/cCt																																																																														
RB1	0	MSKCC	GRCh37	13	48941661	48941661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	304	400	2	ENST00000267163.4:c.973del	p.Tyr325IlefsTer7	p.Y325Ifs*7	ENST00000267163	NM_000321.2	324	aTt/at																																																																														
IRS2	0	MSKCC	GRCh37	13	110434967	110434967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	1095	1034	4	ENST00000375856.3:c.3434G>A	p.Arg1145His	p.R1145H	ENST00000375856	NM_003749.2	1145	cGc/cAc																																																																														
CTCF	0	MSKCC	GRCh37	16	67655372	67655372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	87	833	0	ENST00000264010.4:c.1235G>T	p.Cys412Phe	p.C412F	ENST00000264010	NM_006565.3	412	tGt/tTt																																																																														
NSD1	0	MSKCC	GRCh37	5	176678804	176678804	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0018978-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	84	658	0	ENST00000439151.2:c.4715G>C	p.Gly1572Ala	p.G1572A	ENST00000439151	NM_022455.4	1572	gGa/gCa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0018980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	56	846	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	42	772	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0018981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	18	665	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31017784	31017784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	33	654	0	ENST00000375687.4:c.646G>A	p.Ala216Thr	p.A216T	ENST00000375687	NM_015338.5	216	Gct/Act																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105923	27105923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0018985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	238	618	3	ENST00000324856.7:c.5534G>T	p.Arg1845Leu	p.R1845L	ENST00000324856	NM_006015.4	1845	cGg/cTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89717776	89717776	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0018985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	70	437	0	ENST00000371953.3:c.801G>T	p.Lys267Asn	p.K267N	ENST00000371953	NM_000314.4	267	aaG/aaT																																																																														
KMT2A	0	MSKCC	GRCh37	11	118365075	118365075	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0018985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	250	759	0	ENST00000534358.1:c.5251A>T	p.Lys1751Ter	p.K1751*	ENST00000534358	NM_005933.3	1751	Aaa/Taa																																																																														
RB1	0	MSKCC	GRCh37	13	48934174	48934189	+	frameshift_variant	Frame_Shift_Del	DEL	ATGATCTGGTGATTTC	ATGATCTGGTGATTTC	-			P-0018985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	119	487	0	ENST00000267163.4:c.631_646del	p.Asp211PhefsTer3	p.D211Ffs*3	ENST00000267163	NM_000321.2	210	gATGATCTGGTGATTTCa/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCA			P-0018985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	129	901	0	ENST00000269305.4:c.626_627insTGCCCCTCCTCAGCATCTTATCCGAGTGGAAGGAAATTTGCGTGTGGAGTATTTGGATGACAG	p.Asp208_Arg209insSerAlaProProGlnHisLeuIleArgValGluGlyAsnLeuArgValGluTyrLeuAspAsp	p.D208_R209insSAPPQHLIRVEGNLRVEYLDD	ENST00000269305	NM_001126112.2	209	aga/agTGCCCCTCCTCAGCATCTTATCCGAGTGGAAGGAAATTTGCGTGTGGAGTATTTGGATGACAGa																																																																														
PMS1	0	MSKCC	GRCh37	2	190708753	190708753	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0018985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	227	716	0	ENST00000441310.2:c.646A>T	p.Thr216Ser	p.T216S	ENST00000441310	NM_000534.4	216	Act/Tct																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201737	66201737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	294	669	0	ENST00000273854.3:c.2765G>T	p.Arg922Met	p.R922M	ENST00000273854	NM_004439.5	922	aGg/aTg																																																																														
RASA1	0	MSKCC	GRCh37	5	86659197	86659238	+	inframe_deletion	In_Frame_Del	DEL	ATCTTAGAGGGTAGTGATGCCCAACTTATTTATTTTGAAAGC	ATCTTAGAGGGTAGTGATGCCCAACTTATTTATTTTGAAAGC	-			P-0018985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	68	416	0	ENST00000274376.6:c.1486_1527del	p.Ile496_Ser509del	p.I496_S509del	ENST00000274376	NM_002890.2	496	ATCTTAGAGGGTAGTGATGCCCAACTTATTTATTTTGAAAGC/-																																																																														
STK40	0	MSKCC	GRCh37	1	36807477	36807477	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139437228		P-0018987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	245	692	3	ENST00000373129.3:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000373129	NM_032017.1	396	cGg/cAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89653825	89653826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0018987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	176	456	0	ENST00000371953.3:c.124dup	p.Leu42ProfsTer2	p.L42Pfs*2	ENST00000371953	NM_000314.4	41	-/C																																																																														
TP53	0	MSKCC	GRCh37	17	7578411	7578416	+	frameshift_variant	Frame_Shift_Del	DEL	CACAAC	CACAAC	AACAA			P-0018987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	214	685	3	ENST00000269305.4:c.514_519delinsTTGTT	p.Val172LeufsTer75	p.V172Lfs*75	ENST00000269305	NM_001126112.2	172	GTTGTG/TTGTT																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0018988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	238	884	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0018988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	506	942	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
GLI1	0	MSKCC	GRCh37	12	57860064	57860064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	236	1025	1	ENST00000228682.2:c.804C>A	p.Phe268Leu	p.F268L	ENST00000228682	NM_005269.2	268	ttC/ttA																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602328	10602329	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0018988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	238	901	2	ENST00000171111.5:c.1249_1250delinsTT	p.Gly417Leu	p.G417L	ENST00000171111	NM_203500.1	417	GGg/TTg																																																																														
RAC1	0	MSKCC	GRCh37	7	6439806	6439806	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0018988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	140	524	0	ENST00000356142.4:c.332A>C	p.Asn111Thr	p.N111T	ENST00000356142	NM_018890.3	111	aAt/aCt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	78	628	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
CCND1	0	MSKCC	GRCh37	11	69466022	69466022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	108	849	2	ENST00000227507.2:c.860C>A	p.Pro287His	p.P287H	ENST00000227507	NM_053056.2	287	cCc/cAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023644	27023645	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGCCTCCCTCCTCCAGCGCCT			P-0018991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	55	707	0	ENST00000324856.7:c.759_780dup	p.Ser261LeufsTer146	p.S261Lfs*146	ENST00000324856	NM_006015.4	250	-/CCGCCTCCCTCCTCCAGCGCCT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105581	27105582	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	92	662	1	ENST00000324856.7:c.5195dupA	p.Glu1733GlyfsTer3	p.E1733Gfs*3	ENST00000324856	NM_006015.4	1731	tta/ttAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717687	89717688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	93	720	0	ENST00000371953.3:c.712_713insA	p.Phe238TyrfsTer5	p.F238Yfs*5	ENST00000371953	NM_000314.4	238	ttc/tAtc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487153	56487153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	107	653	0	ENST00000267101.3:c.1299G>A	p.Met433Ile	p.M433I	ENST00000267101	NM_001982.3	433	atG/atA																																																																														
CTCF	0	MSKCC	GRCh37	16	67646020	67646021	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0018991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	83	581	0	ENST00000264010.4:c.949dup	p.Thr317AsnfsTer92	p.T317Nfs*92	ENST00000264010	NM_006565.3	316	-/A																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589563	67589619	+	inframe_deletion	In_Frame_Del	DEL	TGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAAAAAGTCG	TGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAAAAAGTCG	-			P-0018991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	32	517	0	ENST00000274335.5:c.1326_1382del	p.Ala444_Glu462del	p.A444_E462del	ENST00000274335		442	atTGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAAAAAGTCGa/ata																																																																														
KLF4	0	MSKCC	GRCh37	9	110248148	110248148	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	85	662	0	ENST00000374672.4:c.1324G>C	p.Glu442Gln	p.E442Q	ENST00000374672	NM_004235.4	442	Gaa/Caa																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434208	121434208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	124	781	0	ENST00000257555.6:c.1099G>A	p.Ala367Thr	p.A367T	ENST00000257555		367	Gcc/Acc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906651	32906651	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	185	721	0	ENST00000380152.3:c.1036A>G	p.Asn346Asp	p.N346D	ENST00000380152		346	Aac/Gac																																																																														
BRCA2	0	MSKCC	GRCh37	13	32954246	32954246	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	189	740	0	ENST00000380152.3:c.9220C>G	p.Leu3074Val	p.L3074V	ENST00000380152		3074	Cta/Gta																																																																														
TEK	0	MSKCC	GRCh37	9	27212745	27212745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	108	1005	1	ENST00000380036.4:c.2727C>A	p.Asn909Lys	p.N909K	ENST00000380036	NM_000459.3	909	aaC/aaA																																																																														
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	66	853	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32929253	32929254	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0018997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	39	774	0	ENST00000380152.3:c.7267_7268del	p.Val2423Ter	p.V2423*	ENST00000380152		2421	caGTgt/cagt																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185146555	185146555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0018997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	45	661	1	ENST00000265026.3:c.186C>A	p.Ser62Arg	p.S62R	ENST00000265026	NM_004721.4	62	agC/agA																																																																														
TP63	0	MSKCC	GRCh37	3	189607270	189607270	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0018997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	58	741	0	ENST00000264731.3:c.1649T>G	p.Val550Gly	p.V550G	ENST00000264731	NM_003722.4	550	gTc/gGc																																																																														
NSD1	0	MSKCC	GRCh37	5	176637027	176637027	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	40	830	0	ENST00000439151.2:c.1627T>C	p.Ser543Pro	p.S543P	ENST00000439151	NM_022455.4	543	Tct/Cct																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7976564	7976581	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGCCCCTTAGTCTGAA	TCAGCCCCTTAGTCTGAA	ACCT			P-0018997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	16	670	0	ENST00000319144.4:c.1811_1828delinsAGGT	p.Ile604LysfsTer32	p.I604Kfs*32	ENST00000319144	NM_001139.2	604	aTTCAGACTAAGGGGCTGAcc/aAGGTcc																																																																														
TP53	0	MSKCC	GRCh37	17	7578376	7578379	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0018998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	13	550	0	ENST00000269305.4:c.551_554delATAG	p.Asp184AlafsTer62	p.D184Afs*62	ENST00000269305	NM_001126112.2	184	gATAGc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	428	973	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0019000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	66	702	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
SOX9	0	MSKCC	GRCh37	17	70117888	70117888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	253	593	0	ENST00000245479.2:c.356C>A	p.Ala119Glu	p.A119E	ENST00000245479	NM_000346.3	119	gCg/gAg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152115	11152115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	235	807	1	ENST00000344626.4:c.4303G>A	p.Asp1435Asn	p.D1435N	ENST00000344626	NM_003072.3	1435	Gac/Aac																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911607	134911607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	107	707	1	ENST00000398015.3:c.2072G>A	p.Arg691Gln	p.R691Q	ENST00000398015	NM_004441.4	691	cGg/cAg																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41749527	41749527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	187	654	1	ENST00000226382.2:c.268G>A	p.Gly90Ser	p.G90S	ENST00000226382	NM_003924.3	90	Ggc/Agc																																																																														
KIT	0	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	669	832	1	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
KIT	0	MSKCC	GRCh37	4	55595519	55595519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	148	610	0	ENST00000288135.5:c.2009C>T	p.Thr670Ile	p.T670I	ENST00000288135	NM_000222.2	670	aCa/aTa																																																																														
SETD2	0	MSKCC	GRCh37	3	47161938	47161939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	93	240	0	ENST00000409792.3:c.4187dup	p.Asn1396LysfsTer2	p.N1396Kfs*2	ENST00000409792	NM_014159.6	1396	aat/aaAt																																																																														
KIT	0	MSKCC	GRCh37	4	55593609	55593629	+	inframe_deletion	In_Frame_Del	DEL	GTTGTTGAGGAGATAAATGGA	GTTGTTGAGGAGATAAATGGA	-			P-0019006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	114	251	0	ENST00000288135.5:c.1675_1695del	p.Val559_Gly565del	p.V559_G565del	ENST00000288135	NM_000222.2	559	GTTGTTGAGGAGATAAATGGA/-																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5534743	5534743	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0019006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	15	220	0	ENST00000397747.3:c.56-2A>T		p.X19_splice	ENST00000397747	NM_025239.3	19																																																																															
ATRX	0	MSKCC	GRCh37	X	76938283	76938283	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	80	322	0	ENST00000373344.5:c.2465A>G	p.Glu822Gly	p.E822G	ENST00000373344	NM_000489.3	822	gAa/gGa																																																																														
FAM58A	0	MSKCC	GRCh37	X	152861577	152861577	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	461	1045	0	ENST00000406277.2:c.175G>T	p.Glu59Ter	p.E59*	ENST00000406277	NM_152274.4	59	Gag/Tag																																																																														
FGF3	0	MSKCC	GRCh37	11	69633560	69633560	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	234	625	0	ENST00000334134.2:c.142C>G	p.Leu48Val	p.L48V	ENST00000334134	NM_005247.2	48	Ctc/Gtc																																																																														
TSC2	0	MSKCC	GRCh37	16	2136340	2136340	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	634	1177	0	ENST00000219476.3:c.4809C>G	p.Asp1603Glu	p.D1603E	ENST00000219476	NM_000548.3	1603	gaC/gaG																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578294	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTAAG	CTAAG	-			P-0019008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	359	717	0	ENST00000269305.4:c.560-5_560-1del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
RB1	0	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	109	304	0	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	496	1158	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120512221	120512221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	421	749	0	ENST00000256646.2:c.1021G>C	p.Asp341His	p.D341H	ENST00000256646	NM_024408.3	341	Gat/Cat																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871044	12871044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	304	577	0	ENST00000228872.4:c.271C>T	p.Pro91Ser	p.P91S	ENST00000228872	NM_004064.3	91	Ccc/Tcc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49439959	49439959	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	380	884	0	ENST00000301067.7:c.4584-2A>T		p.X1528_splice	ENST00000301067	NM_003482.3	1528																																																																															
ACVR1	0	MSKCC	GRCh37	2	158594077	158594077	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	49	258	0	ENST00000263640.3:c.1496A>G	p.Asp499Gly	p.D499G	ENST00000263640	NM_001105.4	499	gAt/gGt																																																																														
IRS1	0	MSKCC	GRCh37	2	227660910	227660910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	348	936	0	ENST00000305123.5:c.2545G>A	p.Ala849Thr	p.A849T	ENST00000305123	NM_005544.2	849	Gct/Act																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499520	89499520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	210	412	0	ENST00000336596.2:c.2690G>A	p.Arg897Lys	p.R897K	ENST00000336596	NM_005233.5	897	aGg/aAg																																																																														
GATA2	0	MSKCC	GRCh37	3	128205658	128205658	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	191	779	1	ENST00000341105.2:c.217A>T	p.Ser73Cys	p.S73C	ENST00000341105	NM_032638.4	73	Agc/Tgc																																																																														
PRKCI	0	MSKCC	GRCh37	3	169991071	169991071	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C			P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	167	479	0	ENST00000295797.4:c.592-3T>C		p.X198_splice	ENST00000295797	NM_002740.5	198																																																																															
EPHA5	0	MSKCC	GRCh37	4	66356432	66356433	+	splice_acceptor_variant,intron_variant	Splice_Site	DNP	TG	TG	GT			P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	24	269	2	ENST00000273854.3:c.1067-3_1067-2delinsAC		p.X356_splice	ENST00000273854	NM_004439.5	356																																																																															
EPHA5	0	MSKCC	GRCh37	4	66361213	66361213	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	117	314	0	ENST00000273854.3:c.959G>C	p.Gly320Ala	p.G320A	ENST00000273854	NM_004439.5	320	gGc/gCc																																																																														
PARK2	0	MSKCC	GRCh37	6	162622239	162622239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	213	526	0	ENST00000366898.1:c.458C>A	p.Pro153His	p.P153H	ENST00000366898	NM_004562.2	153	cCc/cAc																																																																														
HGF	0	MSKCC	GRCh37	7	81386592	81386592	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	172	386	0	ENST00000222390.5:c.395A>G	p.Lys132Arg	p.K132R	ENST00000222390	NM_000601.4	132	aAa/aGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0019010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	32	836	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
SDHA	0	MSKCC	GRCh37	5	251554	251554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	65	1009	2	ENST00000264932.6:c.1765C>T	p.Arg589Trp	p.R589W	ENST00000264932	NM_004168.2	589	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1654	79	1512	0	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	20	745	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426035	49426035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019022-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	122	813	0	ENST00000301067.7:c.12453C>A	p.Asn4151Lys	p.N4151K	ENST00000301067	NM_003482.3	4151	aaC/aaA																																																																														
TP53	0	MSKCC	GRCh37	17	7578506	7578507	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCAGGTCTTGGCCAGTTGGCAAAACATCTT			P-0019022-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			598	428	1013	0	ENST00000269305.4:c.394_423dup	p.Lys132_Cys141dup	p.K132_C141dup	ENST00000269305	NM_001126112.2	132	-/AAGATGTTTTGCCAACTGGCCAAGACCTGC																																																																														
TMEM127	0	MSKCC	GRCh37	2	96919736	96919736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019022-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	140	704	0	ENST00000258439.3:c.527G>T	p.Ser176Ile	p.S176I	ENST00000258439	NM_001193304.2	176	aGc/aTc																																																																														
INHA	0	MSKCC	GRCh37	2	220439537	220439537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019022-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			254	353	753	0	ENST00000243786.2:c.390G>C	p.Gln130His	p.Q130H	ENST00000243786	NM_002191.3	130	caG/caC																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	297	590	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	358	829	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																																																														
PARP1	0	MSKCC	GRCh37	1	226552831	226552838	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCTTCA	CGCCTTCA	-			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	541	604	0	ENST00000366794.5:c.2523_2530del	p.Glu842MetfsTer8	p.E842Mfs*8	ENST00000366794	NM_001618.3	841	cgTGAAGGCGaa/cgaa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944121	71944123	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GAG	GAG	-			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	344	700	2	ENST00000298229.2:c.1960_1962del	p.Glu654del	p.E654del	ENST00000298229	NM_001567.3	652	GAG/-																																																																														
RB1	0	MSKCC	GRCh37	13	49039430	49039430	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	362	699	0	ENST00000267163.4:c.2415T>G	p.Tyr805Ter	p.Y805*	ENST00000267163	NM_000321.2	805	taT/taG																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779590	3779590	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	454	870	0	ENST00000262367.5:c.5458A>T	p.Lys1820Ter	p.K1820*	ENST00000262367	NM_004380.2	1820	Aag/Tag																																																																														
CIC	0	MSKCC	GRCh37	19	42795109	42795109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	457	850	1	ENST00000575354.2:c.2189C>T	p.Ser730Leu	p.S730L	ENST00000575354	NM_015125.3	730	tCg/tTg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0019026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	756	897	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
MAPK1	0	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	8	459	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112176278	112176278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	10	504	3	ENST00000257430.4:c.4987G>A	p.Glu1663Lys	p.E1663K	ENST00000257430	NM_000038.5	1663	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7579542	7579542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	11	736	2	ENST00000269305.4:c.145G>A	p.Asp49Asn	p.D49N	ENST00000269305	NM_001126112.2	49	Gat/Aat																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	21	464	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	91	434	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0019031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	124	362	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89685305	89685305	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	89	441	0	ENST00000371953.3:c.200T>C	p.Ile67Thr	p.I67T	ENST00000371953	NM_000314.4	67	aTa/aCa																																																																														
TSC1	0	MSKCC	GRCh37	9	135779129	135779129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	180	474	1	ENST00000298552.3:c.2117G>A	p.Arg706His	p.R706H	ENST00000298552	NM_001162426.1	706	cGt/cAt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591135	67591149	+	inframe_deletion	In_Frame_Del	DEL	GAGAGACCAATACTT	GAGAGACCAATACTT	-			P-0019031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	53	369	0	ENST00000274335.5:c.1730_1744del	p.Arg577_Leu581del	p.R577_L581del	ENST00000274335		576	acGAGAGACCAATACTTg/acg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720732	89720733	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	10	100	0	ENST00000371953.3:c.884dup	p.Cys296MetfsTer2	p.C296Mfs*2	ENST00000371953	NM_000314.4	295	cta/cTta																																																																														
ATM	0	MSKCC	GRCh37	11	108117852	108117852	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0019031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	53	399	0	ENST00000278616.4:c.1063C>T	p.Gln355Ter	p.Q355*	ENST00000278616	NM_000051.3	355	Cag/Tag																																																																														
PDPK1	0	MSKCC	GRCh37	16	2647129	2647129	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	23	485	0	ENST00000342085.4:c.1407A>T	p.Leu469Phe	p.L469F	ENST00000342085	NM_002613.4	469	ttA/ttT																																																																														
MSI2	0	MSKCC	GRCh37	17	55752401	55752401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	282	903	1	ENST00000284073.2:c.859G>A	p.Gly287Ser	p.G287S	ENST00000284073	NM_138962.2	287	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0019033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	278	1140	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591555	48591945	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAAAAAAAAAAATTAGTGTTTTAAGAACAGTGCTAAGTACTGAGCTAGAAAATAGAAGACATGGAAATTCCTACCTTTTAATGCATTATGTTATTTTAATCCAGTTGTTTTGGGTGCATTACATTTCCATCTCCCCTCCCTTTACCCTTTCTTTTAGGAAAAACTGTGTTGTGGAGTGCAAGTGAAAGCCTTATATCTTTCTCATGGGAGGATGTTCTTTCCCATTTATTTCCTATAGCTCCTGAGTATTGGTGTTCCATTGCTTACTTTGAAATGGATGTTCAGGTAGGAGAGACATTTAAGGTTCCTTCAAGCTGCCCTATTGTTACTGTTGATGGATACGTGGACCCTTCTGGAGGAGATCGCTTTTGTTTGGGTCAACTCTCCAATG	TAAAAAAAAAAATTAGTGTTTTAAGAACAGTGCTAAGTACTGAGCTAGAAAATAGAAGACATGGAAATTCCTACCTTTTAATGCATTATGTTATTTTAATCCAGTTGTTTTGGGTGCATTACATTTCCATCTCCCCTCCCTTTACCCTTTCTTTTAGGAAAAACTGTGTTGTGGAGTGCAAGTGAAAGCCTTATATCTTTCTCATGGGAGGATGTTCTTTCCCATTTATTTCCTATAGCTCCTGAGTATTGGTGTTCCATTGCTTACTTTGAAATGGATGTTCAGGTAGGAGAGACATTTAAGGTTCCTTCAAGCTGCCCTATTGTTACTGTTGATGGATACGTGGACCCTTCTGGAGGAGATCGCTTTTGTTTGGGTCAACTCTCCAATG	-			P-0019033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	27	4	0	ENST00000342988.3:c.956-237_1109del		p.X319_splice	ENST00000342988	NM_005359.5	319																																																																															
APC	0	MSKCC	GRCh37	5	112174658	112174658	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	94	493	0	ENST00000257430.4:c.3367C>T	p.Gln1123Ter	p.Q1123*	ENST00000257430	NM_000038.5	1123	Caa/Taa																																																																														
TBX3	0	MSKCC	GRCh37	12	115120620	115120620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	183	1009	0	ENST00000257566.3:c.386G>T	p.Gly129Val	p.G129V	ENST00000257566	NM_016569.3	129	gGa/gTa																																																																														
MSI1	0	MSKCC	GRCh37	12	120794801	120794801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	91	1037	2	ENST00000257552.2:c.556C>A	p.Pro186Thr	p.P186T	ENST00000257552	NM_002442.3	186	Cca/Aca																																																																														
LATS2	0	MSKCC	GRCh37	13	21557692	21557692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	193	768	0	ENST00000382592.4:c.2153del	p.Asp718AlafsTer27	p.D718Afs*27	ENST00000382592	NM_014572.2	718	gAc/gc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610427	10610427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	162	709	0	ENST00000171111.5:c.283G>T	p.Ala95Ser	p.A95S	ENST00000171111	NM_203500.1	95	Gcc/Tcc																																																																														
AXL	0	MSKCC	GRCh37	19	41762511	41762511	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200253980		P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	57	363	0	ENST00000301178.4:c.2191G>A	p.Asp731Asn	p.D731N	ENST00000301178	NM_021913.4	731	Gat/Aat																																																																														
CIC	0	MSKCC	GRCh37	19	42793442	42793442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	125	565	0	ENST00000575354.2:c.1245del	p.Pro417ArgfsTer18	p.P417Rfs*18	ENST00000575354	NM_015125.3	415	cGg/cg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133854	55133854	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	119	560	0	ENST00000257290.5:c.1067T>A	p.Leu356Gln	p.L356Q	ENST00000257290	NM_006206.4	356	cTg/cAg																																																																														
PLK2	0	MSKCC	GRCh37	5	57751864	57751864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	95	496	1	ENST00000274289.3:c.1373G>T	p.Ser458Ile	p.S458I	ENST00000274289	NM_006622.3	458	aGc/aTc																																																																														
FYN	0	MSKCC	GRCh37	6	111983028	111983028	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	83	878	0	ENST00000368678.4:c.1519C>A	p.Arg507Ser	p.R507S	ENST00000368678		507	Cgc/Agc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513299	106513299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	113	526	1	ENST00000359195.3:c.2203C>A	p.Gln735Lys	p.Q735K	ENST00000359195	NM_002649.2	735	Caa/Aaa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53239616	53239616	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	133	344	0	ENST00000375401.3:c.1726del	p.Leu576SerfsTer83	p.L576Sfs*83	ENST00000375401	NM_004187.3	576	Ctc/tc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	136	360	0				ENST00000310581	NM_198253.2																																																																																
TSC1	0	MSKCC	GRCh37	9	135797314	135797314	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	113	474	0	ENST00000298552.3:c.555C>A	p.Tyr185Ter	p.Y185*	ENST00000298552	NM_001162426.1	185	taC/taA																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871143	12871143	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	106	344	0	ENST00000228872.4:c.371del	p.Asn124ThrfsTer21	p.N124Tfs*21	ENST00000228872	NM_004064.3	124	Aac/ac																																																																														
LATS2	0	MSKCC	GRCh37	13	21555716	21555716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	246	1013	1	ENST00000382592.4:c.2554G>A	p.Asp852Asn	p.D852N	ENST00000382592	NM_014572.2	852	Gac/Aac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144124	11144124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	257	947	0	ENST00000344626.4:c.3705C>A	p.Asp1235Glu	p.D1235E	ENST00000344626	NM_003072.3	1235	gaC/gaA																																																																														
MITF	0	MSKCC	GRCh37	3	69988248	69988248	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0019036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	122	447	0	ENST00000352241.4:c.583-1G>A		p.X195_splice	ENST00000352241	NM_198159.2	195																																																																															
RBM10	0	MSKCC	GRCh37	X	47035972	47035985	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GGCTGTGCAATAAG	GGCTGTGCAATAAG	-			P-0019036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	233	515	0	ENST00000329236.7:c.420_432+1del		p.WLCNK140fs	ENST00000329236	NM_001204466.1	140	tGGCTGTGCAATAAG/t																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0019037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	217	824	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0019037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	76	426	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	124	828	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101300	27101300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	176	810	1	ENST00000324856.7:c.4582C>T	p.Arg1528Ter	p.R1528*	ENST00000324856	NM_006015.4	1528	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0019041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	186	1104	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
TGFBR2	0	MSKCC	GRCh37	3	30713430	30713450	+	inframe_deletion	In_Frame_Del	DEL	AAGGTCGCTTTGCTGAGGTCT	AAGGTCGCTTTGCTGAGGTCT	-			P-0019041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	139	603	0	ENST00000359013.4:c.831_851del	p.Lys277_Tyr284delinsAsn	p.K277_Y284delinsN	ENST00000359013	NM_001024847.2	277	aAAGGTCGCTTTGCTGAGGTCTat/aat																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156521	55156521	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	110	599	1	ENST00000257290.5:c.2922T>A	p.His974Gln	p.H974Q	ENST00000257290	NM_006206.4	974	caT/caA																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0019043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	58	645	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425869	49425869	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	37	678	0	ENST00000301067.7:c.12619A>T	p.Lys4207Ter	p.K4207*	ENST00000301067	NM_003482.3	4207	Aaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	94	1075	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0019044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	20	599	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	92	1087	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
POLD1	0	MSKCC	GRCh37	19	50918992	50918992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	50	902	0	ENST00000440232.2:c.2729G>A	p.Arg910Gln	p.R910Q	ENST00000440232	NM_002691.3	910	cGg/cAg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948520	71948520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	37	1267	1	ENST00000298229.2:c.3232C>T	p.Arg1078Trp	p.R1078W	ENST00000298229	NM_001567.3	1078	Cgg/Tgg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922954	44922954	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	46	1114	0	ENST00000377967.4:c.1817del	p.Asn606ThrfsTer19	p.N606Tfs*19	ENST00000377967	NM_021140.2	605	ggA/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	15	696	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097721	27097721	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	194	912	1	ENST00000324856.7:c.3310G>T	p.Glu1104Ter	p.E1104*	ENST00000324856	NM_006015.4	1104	Gaa/Taa																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856448	111856448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	47	505	1	ENST00000341259.2:c.499G>A	p.Gly167Arg	p.G167R	ENST00000341259	NM_005475.2	167	Gga/Aga																																																																														
RNF43	0	MSKCC	GRCh37	17	56440957	56440957	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	47	671	0	ENST00000407977.2:c.380G>C	p.Arg127Pro	p.R127P	ENST00000407977		127	cGg/cCg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900180	101900180	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	46	412	1	ENST00000374994.4:c.614T>A	p.Ile205Asn	p.I205N	ENST00000374994	NM_004612.2	205	aTt/aAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	79	784	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	108	887	1	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga																																																																														
CBFB	0	MSKCC	GRCh37	16	67100663	67100663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	66	603	0	ENST00000412916.2:c.361G>A	p.Gly121Ser	p.G121S	ENST00000412916		121	Ggt/Agt																																																																														
NF1	0	MSKCC	GRCh37	17	29679396	29679396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	49	699	1	ENST00000358273.4:c.7579G>A	p.Gly2527Arg	p.G2527R	ENST00000358273	NM_001042492.2	2527	Ggg/Agg																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323231	31323232	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGTGTCCTGAGTTTGGTCCTCGCCATC			P-0019055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	130	596	0	ENST00000412585.2:c.757_758insGATGGCGAGGACCAAACTCAGGACACCG	p.Glu253GlyfsTer20	p.E253Gfs*20	ENST00000412585	NM_005514.6	253	gag/gGATGGCGAGGACCAAACTCAGGACACCGag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992354	72992354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	259	1071	3	ENST00000268489.5:c.1691C>T	p.Ala564Val	p.A564V	ENST00000268489	NM_006885.3	564	gCg/gTg																																																																														
NF2	0	MSKCC	GRCh37	22	30034825	30035147	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCCTTAATCCTAGCTCTGCTCACTTCTTGGGGCTATTGATTAATTTGTTTCAGAAACACCATAGGAAGTGAATATTACCTCTTGCTATAGGTGACTTTGTGAATACTTCAAACTGTAAAATCACAACTTTCAGGAAATGTGATAAATTTAGTGGGAAAAAAATTTAATGCACGCCTTGCAAAGGCTTCTTTGAGGGTAGCACAGGAGGAAGTGCCAATATAGTGTGTTTGTCTTTTGCTCTGCAATTCTGCAGGTACTGGATCATGATGTTTCAAAGGAAGAACCAGTCACCTTTCACTTCTTGGCCAAATTTTATCCTGAG	TGCCTTAATCCTAGCTCTGCTCACTTCTTGGGGCTATTGATTAATTTGTTTCAGAAACACCATAGGAAGTGAATATTACCTCTTGCTATAGGTGACTTTGTGAATACTTCAAACTGTAAAATCACAACTTTCAGGAAATGTGATAAATTTAGTGGGAAAAAAATTTAATGCACGCCTTGCAAAGGCTTCTTTGAGGGTAGCACAGGAGGAAGTGCCAATATAGTGTGTTTGTCTTTTGCTCTGCAATTCTGCAGGTACTGGATCATGATGTTTCAAAGGAAGAACCAGTCACCTTTCACTTCTTGGCCAAATTTTATCCTGAG	-			P-0019057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	37	3	0	ENST00000338641.4:c.241-254_309del		p.X81_splice	ENST00000338641	NM_000268.3	81																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	278	647	0				ENST00000310581	NM_198253.2																																																																																
CDKN2C	0	MSKCC	GRCh37	1	51439634	51439634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	233	520	0	ENST00000262662.1:c.199G>C	p.Asp67His	p.D67H	ENST00000262662		67	Gac/Cac																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433904	49433904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	510	1062	1	ENST00000301067.7:c.7649del	p.Pro2550LeufsTer33	p.P2550Lfs*33	ENST00000301067	NM_003482.3	2550	cCt/ct																																																																														
CDK12	0	MSKCC	GRCh37	17	37618892	37618892	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	422	1086	0	ENST00000447079.4:c.568C>G	p.Leu190Val	p.L190V	ENST00000447079	NM_015083.1	190	Ctg/Gtg																																																																														
APC	0	MSKCC	GRCh37	5	112178229	112178229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	296	745	0	ENST00000257430.4:c.6938C>T	p.Ala2313Val	p.A2313V	ENST00000257430	NM_000038.5	2313	gCc/gTc																																																																														
BCOR	0	MSKCC	GRCh37	X	39933238	39933238	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	591	575	0	ENST00000378444.4:c.1361A>C	p.Lys454Thr	p.K454T	ENST00000378444	NM_001123385.1	454	aAa/aCa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061196	38061196	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	133	599	0	ENST00000250448.2:c.793del	p.Arg265AlafsTer56	p.R265Afs*56	ENST00000250448	NM_004496.3	265	Cgc/gc																																																																														
CDK12	0	MSKCC	GRCh37	17	37667816	37667816	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	120	771	0	ENST00000447079.4:c.2701T>G	p.Tyr901Asp	p.Y901D	ENST00000447079	NM_015083.1	901	Tac/Gac																																																																														
CDK12	0	MSKCC	GRCh37	17	37672015	37672015	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	119	860	0	ENST00000447079.4:c.2801del	p.Pro934LeufsTer12	p.P934Lfs*12	ENST00000447079	NM_015083.1	934	Cct/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	18	868	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603023	48603023	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	14	370	0	ENST00000342988.3:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000342988	NM_005359.5	442	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	DEL	A	A	-			P-0019060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	18	582	1	ENST00000269305.4:c.559+2del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	98	643	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0019062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	440	1016	1	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0019062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	107	527	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3794901	3794901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	128	611	0	ENST00000262367.5:c.3976G>A	p.Ala1326Thr	p.A1326T	ENST00000262367	NM_004380.2	1326	Gct/Act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	158	917	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	129	820	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																														
TSC2	0	MSKCC	GRCh37	16	2111996	2111996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	55	632	1	ENST00000219476.3:c.1244C>T	p.Ala415Val	p.A415V	ENST00000219476	NM_000548.3	415	gCg/gTg																																																																														
LATS2	0	MSKCC	GRCh37	13	21562982	21562982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	67	678	2	ENST00000382592.4:c.937G>A	p.Val313Met	p.V313M	ENST00000382592	NM_014572.2	313	Gtg/Atg																																																																														
CTCF	0	MSKCC	GRCh37	16	67663307	67663307	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	40	518	0	ENST00000264010.4:c.1708A>G	p.Met570Val	p.M570V	ENST00000264010	NM_006565.3	570	Atg/Gtg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	180	815	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	67	459	1	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	81	385	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
MTOR	0	MSKCC	GRCh37	1	11189847	11189847	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	107	631	0	ENST00000361445.4:c.5662T>A	p.Phe1888Ile	p.F1888I	ENST00000361445	NM_004958.3	1888	Ttc/Atc																																																																														
TET1	0	MSKCC	GRCh37	10	70333889	70333889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	98	544	2	ENST00000373644.4:c.1794G>T	p.Gln598His	p.Q598H	ENST00000373644	NM_030625.2	598	caG/caT																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12028672	12028672	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	80	526	0	ENST00000353533.5:c.875G>C	p.Ser292Thr	p.S292T	ENST00000353533	NM_003010.3	292	aGt/aCt																																																																														
STAT5A	0	MSKCC	GRCh37	17	40453387	40453387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	164	920	0	ENST00000345506.4:c.1084G>A	p.Val362Met	p.V362M	ENST00000345506	NM_003152.3	362	Gtg/Atg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119969	70119969	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	59	324	0	ENST00000245479.2:c.972del	p.Ala325ArgfsTer58	p.A325Rfs*58	ENST00000245479	NM_000346.3	324	aCc/ac																																																																														
SOX9	0	MSKCC	GRCh37	17	70120000	70120001	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGA			P-0019065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	43	142	0	ENST00000245479.2:c.1005_1008dup	p.Ser337AspfsTer242	p.S337Dfs*242	ENST00000245479	NM_000346.3	334	-/TGGA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	225	639	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
GATA3	0	MSKCC	GRCh37	10	8111472	8111473	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0019068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	82	924	0	ENST00000346208.3:c.959_960del	p.Cys320SerfsTer31	p.C320Sfs*31	ENST00000346208		320	TGt/t																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434553	49434553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	70	760	1	ENST00000301067.7:c.7000C>T	p.Arg2334Trp	p.R2334W	ENST00000301067	NM_003482.3	2334	Cgg/Tgg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845579	72845579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	146	591	1	ENST00000268489.5:c.3761G>T	p.Cys1254Phe	p.C1254F	ENST00000268489	NM_006885.3	1254	tGc/tTc																																																																														
SPEN	0	MSKCC	GRCh37	1	16261803	16261803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	103	814	0	ENST00000375759.3:c.9068C>G	p.Ala3023Gly	p.A3023G	ENST00000375759	NM_015001.2	3023	gCt/gGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105715	27105717	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	24	383	0	ENST00000324856.7:c.5334_5336del	p.Glu1780del	p.E1780del	ENST00000324856	NM_006015.4	1776	GAA/-																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	70	584	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	66	527	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	0	MSKCC	GRCh37	10	89653859	89653861	+	inframe_deletion	In_Frame_Del	DEL	GTA	GTA	-			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	84	671	0	ENST00000371953.3:c.160_162delGTA	p.Val54del	p.V54del	ENST00000371953	NM_000314.4	53	GTA/-																																																																														
PTEN	0	MSKCC	GRCh37	10	89712013	89712014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	23	331	0	ENST00000371953.3:c.632dup	p.Cys211TrpfsTer32	p.C211Wfs*32	ENST00000371953	NM_000314.4	211	tgc/tGgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	208	863	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ETV6	0	MSKCC	GRCh37	12	12022747	12022747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	50	601	1	ENST00000396373.4:c.853G>A	p.Val285Met	p.V285M	ENST00000396373	NM_001987.4	285	Gtg/Atg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	186	942	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433089	49433089	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	123	887	0	ENST00000301067.7:c.8282T>C	p.Leu2761Pro	p.L2761P	ENST00000301067	NM_003482.3	2761	cTg/cCg																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	106	916	7	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	211	858	13	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
FLT3	0	MSKCC	GRCh37	13	28636037	28636037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	116	852	0	ENST00000241453.7:c.335T>C	p.Leu112Pro	p.L112P	ENST00000241453	NM_004119.2	112	cTg/cCg																																																																														
MGA	0	MSKCC	GRCh37	15	42046674	42046674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	92	795	1	ENST00000219905.7:c.7048G>A	p.Val2350Met	p.V2350M	ENST00000219905	NM_001164273.1	2350	Gtg/Atg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	87	728	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	39	374	3	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993137	72993137	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	142	1159	0	ENST00000268489.5:c.908A>C	p.His303Pro	p.H303P	ENST00000268489	NM_006885.3	303	cAt/cCt																																																																														
RNF43	0	MSKCC	GRCh37	17	56435672	56435672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	77	649	1	ENST00000407977.2:c.1465G>T	p.Gly489Trp	p.G489W	ENST00000407977		489	Ggg/Tgg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288789	15288789	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	17	108	0	ENST00000263388.2:c.3950del	p.Pro1317GlnfsTer103	p.P1317Qfs*103	ENST00000263388	NM_000435.2	1317	cCa/ca																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15298032	15298032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	126	1048	6	ENST00000263388.2:c.1724C>T	p.Thr575Met	p.T575M	ENST00000263388	NM_000435.2	575	aCg/aTg																																																																														
BRD4	0	MSKCC	GRCh37	19	15383774	15383774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	89	755	1	ENST00000263377.2:c.137C>T	p.Pro46Leu	p.P46L	ENST00000263377	NM_058243.2	46	cCg/cTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221481	36221481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	119	998	1	ENST00000222270.7:c.5240C>T	p.Ser1747Leu	p.S1747L	ENST00000222270	NM_014727.1	1747	tCg/tTg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99163079	99163079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	77	806	2	ENST00000074304.5:c.1085C>T	p.Ala362Val	p.A362V	ENST00000074304	NM_001134224.1	362	gCg/gTg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46265048	46265049	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	108	834	0	ENST00000371998.3:c.1924dup	p.Leu642ProfsTer6	p.L642Pfs*6	ENST00000371998		640	tcc/tCcc																																																																														
EP300	0	MSKCC	GRCh37	22	41513520	41513520	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	86	793	2	ENST00000263253.7:c.424G>T	p.Gly142Ter	p.G142*	ENST00000263253	NM_001429.3	142	Gga/Tga																																																																														
PBRM1	0	MSKCC	GRCh37	3	52582248	52582248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	28	239	0	ENST00000394830.3:c.4580G>A	p.Arg1527Gln	p.R1527Q	ENST00000394830	NM_018313.4	1527	cGa/cAa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980601	1980601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201148179		P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	81	643	2	ENST00000382891.5:c.4063C>T	p.Arg1355Trp	p.R1355W	ENST00000382891	NM_133335.3	1355	Cgg/Tgg																																																																														
SDHA	0	MSKCC	GRCh37	5	228442	228442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	69	402	1	ENST00000264932.6:c.764C>T	p.Ala255Val	p.A255V	ENST00000264932	NM_004168.2	255	gCc/gTc																																																																														
APC	0	MSKCC	GRCh37	5	112170720	112170720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	80	692	1	ENST00000257430.4:c.1816A>G	p.Ile606Val	p.I606V	ENST00000257430	NM_000038.5	606	Ata/Gta																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778245	27778245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	42	578	0	ENST00000369163.2:c.394C>A	p.Arg132Ser	p.R132S	ENST00000369163	NM_003536.2	132	Cgc/Agc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120732	94120732	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	90	637	0	ENST00000369303.4:c.319A>T	p.Arg107Trp	p.R107W	ENST00000369303	NM_004440.3	107	Agg/Tgg																																																																														
PARK2	0	MSKCC	GRCh37	6	161969894	161969894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	98	631	0	ENST00000366898.1:c.1075G>T	p.Gly359Cys	p.G359C	ENST00000366898	NM_004562.2	359	Ggc/Tgc																																																																														
PMS2	0	MSKCC	GRCh37	7	6042177	6042177	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	94	873	2	ENST00000265849.7:c.444del	p.Tyr149ThrfsTer52	p.Y149Tfs*52	ENST00000265849	NM_000535.5	148	ccC/cc																																																																														
BRAF	0	MSKCC	GRCh37	7	140481397	140481397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	88	698	0	ENST00000288602.6:c.1411G>A	p.Val471Ile	p.V471I	ENST00000288602	NM_004333.4	471	Gtc/Atc																																																																														
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	131	1009	1	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																														
NBN	0	MSKCC	GRCh37	8	90958469	90958469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	62	703	0	ENST00000265433.3:c.1969A>G	p.Thr657Ala	p.T657A	ENST00000265433	NM_002485.4	657	Act/Gct																																																																														
PTCH1	0	MSKCC	GRCh37	9	98211533	98211533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	72	527	1	ENST00000331920.6:c.3622G>A	p.Ala1208Thr	p.A1208T	ENST00000331920	NM_000264.3	1208	Gcc/Acc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	120	955	2	ENST00000331920.6:c.290delA	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	84	605	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
ATRX	0	MSKCC	GRCh37	X	76937602	76937603	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	74	536	0	ENST00000373344.5:c.3145dupA	p.Ile1049AsnfsTer4	p.I1049Nfs*4	ENST00000373344	NM_000489.3	1049	ata/aAta																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402776	139402776	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	635	1070	1	ENST00000277541.6:c.3233del	p.His1078ProfsTer101	p.H1078Pfs*101	ENST00000277541	NM_017617.3	1078	cAc/cc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52663015	52663015	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	95	522	0	ENST00000394830.3:c.1338T>A	p.Asp446Glu	p.D446E	ENST00000394830	NM_018313.4	446	gaT/gaA																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	105	919	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	57	921	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412683	139412683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	59	988	10	ENST00000277541.6:c.1161C>G	p.Cys387Trp	p.C387W	ENST00000277541	NM_017617.3	387	tgC/tgG																																																																														
SDHC	0	MSKCC	GRCh37	1	161326560	161326572	+	frameshift_variant	Frame_Shift_Del	DEL	TGATCCACACAGC	TGATCCACACAGC	AGA			P-0019084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	85	419	1	ENST00000367975.2:c.335_347delinsAGA	p.Leu112GlnfsTer21	p.L112Qfs*21	ENST00000367975	NM_003001.3	112	cTGATCCACACAGCt/cAGAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	352	959	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	503	1155	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0019085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	19	199	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0019085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	19	199	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323162	31323165	+	frameshift_variant	Frame_Shift_Del	DEL	CCAG	CCAG	-			P-0019085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	142	764	0	ENST00000412585.2:c.824_827del	p.Ser275Ter	p.S275*	ENST00000412585	NM_005514.6	275	tCTGGa/ta																																																																														
ATRX	0	MSKCC	GRCh37	X	76938259	76938259	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	160	463	0	ENST00000373344.5:c.2489A>T	p.Lys830Ile	p.K830I	ENST00000373344	NM_000489.3	830	aAa/aTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	271	1014	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	198	1046	1	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg																																																																														
RB1	0	MSKCC	GRCh37	13	48942685	48942685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	310	707	0	ENST00000267163.4:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000267163	NM_000321.2	358	Cga/Tga																																																																														
CSF3R	0	MSKCC	GRCh37	1	36933718	36933718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	238	980	3	ENST00000361632.4:c.1681C>A	p.His561Asn	p.H561N	ENST00000361632		561	Cac/Aac																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120506386	120506386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	227	873	1	ENST00000256646.2:c.1726C>T	p.Pro576Ser	p.P576S	ENST00000256646	NM_024408.3	576	Ccc/Tcc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857593	9857593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	116	541	0	ENST00000330684.3:c.3808G>T	p.Asp1270Tyr	p.D1270Y	ENST00000330684	NM_001134407.1	1270	Gac/Tac																																																																														
CYLD	0	MSKCC	GRCh37	16	50783709	50783709	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	199	1109	0	ENST00000398568.2:c.100C>T	p.Gln34Ter	p.Q34*	ENST00000398568	NM_001042412.1	34	Caa/Taa																																																																														
JAK3	0	MSKCC	GRCh37	19	17948824	17948824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	248	1094	0	ENST00000458235.1:c.1618C>T	p.Arg540Cys	p.R540C	ENST00000458235	NM_000215.3	540	Cgc/Tgc																																																																														
JAK3	0	MSKCC	GRCh37	19	17954670	17954670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	265	1134	5	ENST00000458235.1:c.224C>A	p.Thr75Lys	p.T75K	ENST00000458235	NM_000215.3	75	aCg/aAg																																																																														
GSK3B	0	MSKCC	GRCh37	3	119582379	119582379	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	126	454	0	ENST00000316626.5:c.1022G>C	p.Arg341Pro	p.R341P	ENST00000316626		341	cGa/cCa																																																																														
ROS1	0	MSKCC	GRCh37	6	117638351	117638351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	133	747	0	ENST00000368508.3:c.6090G>T	p.Glu2030Asp	p.E2030D	ENST00000368508	NM_002944.2	2030	gaG/gaT																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877199	151877200	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	123	481	0	ENST00000262189.6:c.7161dup	p.Arg2388ThrfsTer2	p.R2388Tfs*2	ENST00000262189	NM_170606.2	2387	-/A																																																																														
AR	0	MSKCC	GRCh37	X	66943676	66943676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	207	1048	0	ENST00000374690.3:c.2756C>A	p.Thr919Asn	p.T919N	ENST00000374690	NM_000044.3	919	aCc/aAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	520	973	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7579871	7579872	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	103	1001	0	ENST00000269305.4:c.41dup	p.Ser15GlufsTer14	p.S15Efs*14	ENST00000269305	NM_001126112.2	14	ctg/ctTg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950760	38950760	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	60	520	0	ENST00000357387.3:c.3190A>G	p.Ile1064Val	p.I1064V	ENST00000357387	NM_152756.3	1064	Atc/Gtc																																																																														
NF2	0	MSKCC	GRCh37	22	30069281	30069281	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	114	1114	0	ENST00000338641.4:c.1147del	p.Leu383CysfsTer43	p.L383Cfs*43	ENST00000338641	NM_000268.3	382	gaC/ga																																																																														
BAP1	0	MSKCC	GRCh37	3	52436797	52436798	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0019088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	111	1292	0	ENST00000460680.1:c.1980_1981del	p.Phe660LeufsTer3	p.F660Lfs*3	ENST00000460680	NM_004656.3	660	ttCAag/ttag																																																																														
BAP1	0	MSKCC	GRCh37	3	52443568	52443568	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0019088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	94	854	0	ENST00000460680.1:c.122+2T>C		p.X41_splice	ENST00000460680	NM_004656.3	41																																																																															
EPHB1	0	MSKCC	GRCh37	3	134960133	134960133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	131	1069	0	ENST00000398015.3:c.2490C>G	p.Asn830Lys	p.N830K	ENST00000398015	NM_004441.4	830	aaC/aaG																																																																														
FBXW7	0	MSKCC	GRCh37	4	153271218	153271240	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTTCTTTCCCAAAGAAAAAGA	GGTTTCTTTCCCAAAGAAAAAGA	-			P-0019088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	54	707	0	ENST00000281708.4:c.538_560del	p.Ser180MetfsTer68	p.S180Mfs*68	ENST00000281708	NM_033632.3	180	TCTTTTTCTTTGGGAAAGAAACCa/a																																																																														
TP53	0	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	303	966	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912177	114912177	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	210	643	1	ENST00000543371.1:c.1247G>T	p.Gly416Val	p.G416V	ENST00000543371	NM_001198531.1	416	gGc/gTc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59876545	59876545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	179	680	0	ENST00000259008.2:c.1256G>T	p.Arg419Leu	p.R419L	ENST00000259008	NM_032043.2	419	cGg/cTg																																																																														
CUL3	0	MSKCC	GRCh37	2	225342998	225343000	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0019090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	217	883	0	ENST00000264414.4:c.2092_2094del	p.Asp698del	p.D698del	ENST00000264414	NM_003590.4	698	GAC/-																																																																														
KMT2C	0	MSKCC	GRCh37	7	151871304	151871304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	189	615	0	ENST00000262189.6:c.9286A>G	p.Ile3096Val	p.I3096V	ENST00000262189	NM_170606.2	3096	Ata/Gta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	200	797	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	254	640	5	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	666	861	4	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	256	698	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	142	412	2	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100195	27100195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	233	597	0	ENST00000324856.7:c.3991C>T	p.Gln1331Ter	p.Q1331*	ENST00000324856	NM_006015.4	1331	Cag/Tag																																																																														
CCND1	0	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	366	1013	0	ENST00000227507.2:c.859C>T	p.Pro287Ser	p.P287S	ENST00000227507	NM_053056.2	287	Ccc/Tcc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468308	50468308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	318	808	2	ENST00000331340.3:c.1543C>T	p.Arg515Cys	p.R515C	ENST00000331340	NM_006060.4	515	Cgc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717715	89717716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1393832338		P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	584	738	0	ENST00000371953.3:c.741dup	p.Pro248ThrfsTer5	p.P248Tfs*5	ENST00000371953	NM_000314.4	247	tta/ttAa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589147	67589147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	179	489	0	ENST00000274335.5:c.1135A>G	p.Lys379Glu	p.K379E	ENST00000274335		379	Aaa/Gaa																																																																														
PARK2	0	MSKCC	GRCh37	6	162394349	162394349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	439	497	0	ENST00000366898.1:c.719C>T	p.Thr240Met	p.T240M	ENST00000366898	NM_004562.2	240	aCg/aTg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	153	466	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
MED12	0	MSKCC	GRCh37	X	70351421	70351421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	359	949	4	ENST00000374080.3:c.4069C>T	p.Arg1357Cys	p.R1357C	ENST00000374080		1357	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	428	1014	0	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																														
PALB2	0	MSKCC	GRCh37	16	23641058	23641058	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45464991		P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	317	841	0	ENST00000261584.4:c.2417C>T	p.Pro806Leu	p.P806L	ENST00000261584	NM_024675.3	806	cCg/cTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	425	1185	8	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
RBM10	0	MSKCC	GRCh37	X	47045476	47045476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	390	872	2	ENST00000329236.7:c.2209C>T	p.Arg737Trp	p.R737W	ENST00000329236	NM_001204466.1	737	Cgg/Tgg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9784026	9784026	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	278	836	0	ENST00000377346.4:c.2595-1G>T		p.X865_splice	ENST00000377346	NM_005026.3	865																																																																															
GATA3	0	MSKCC	GRCh37	10	8111482	8111482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	368	970	0	ENST00000346208.3:c.968C>T	p.Thr323Ile	p.T323I	ENST00000346208		323	aCc/aTc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850740	63850741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	283	845	0	ENST00000279873.7:c.1522dup	p.Leu508ProfsTer20	p.L508Pfs*20	ENST00000279873	NM_032199.2	506	-/C																																																																														
TET1	0	MSKCC	GRCh37	10	70411693	70411693	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	282	730	5	ENST00000373644.4:c.4367G>T	p.Arg1456Met	p.R1456M	ENST00000373644	NM_030625.2	1456	aGg/aTg																																																																														
PGR	0	MSKCC	GRCh37	11	100999467	100999467	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	360	1164	0	ENST00000325455.5:c.335A>G	p.Asp112Gly	p.D112G	ENST00000325455	NM_001202474.3	112	gAc/gGc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420376	49420376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	298	851	2	ENST00000301067.7:c.15373T>A	p.Phe5125Ile	p.F5125I	ENST00000301067	NM_003482.3	5125	Ttc/Atc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434759	49434759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	139	1005	3	ENST00000301067.7:c.6794delG	p.Gly2265GlufsTer21	p.G2265Efs*21	ENST00000301067	NM_003482.3	2265	gGa/ga																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222835	5222835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	201	519	2	ENST00000357368.4:c.2968G>T	p.Gly990Cys	p.G990C	ENST00000357368	NM_002850.3	990	Ggc/Tgc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10291169	10291169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	402	978	2	ENST00000340748.4:c.302G>A	p.Arg101Gln	p.R101Q	ENST00000340748		101	cGg/cAg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211906	36211906	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	543	1326	2	ENST00000222270.7:c.1659del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	553	Aaa/aa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221027	36221027	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	275	739	1	ENST00000222270.7:c.5076+1G>A		p.X1692_splice	ENST00000222270	NM_014727.1	1692																																																																															
ALK	0	MSKCC	GRCh37	2	29416485	29416485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	332	936	0	ENST00000389048.3:c.4468C>T	p.His1490Tyr	p.H1490Y	ENST00000389048	NM_004304.4	1490	Cac/Tac																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31376717	31376717	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	146	475	0	ENST00000328111.2:c.712T>A	p.Trp238Arg	p.W238R	ENST00000328111	NM_006892.3	238	Tgg/Agg																																																																														
VHL	0	MSKCC	GRCh37	3	10188231	10188231	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	352	983	1	ENST00000256474.2:c.374A>C	p.His125Pro	p.H125P	ENST00000256474	NM_000551.3	125	cAc/cCc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851874	134851874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	335	962	1	ENST00000398015.3:c.1280T>C	p.Ile427Thr	p.I427T	ENST00000398015	NM_004441.4	427	aTc/aCc																																																																														
ATR	0	MSKCC	GRCh37	3	142274893	142274893	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	316	881	2	ENST00000350721.4:c.2167del	p.Tyr723IlefsTer2	p.Y723Ifs*2	ENST00000350721	NM_001184.3	723	Tat/at																																																																														
APC	0	MSKCC	GRCh37	5	112176057	112176057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	314	704	0	ENST00000257430.4:c.4766G>A	p.Arg1589His	p.R1589H	ENST00000257430	NM_000038.5	1589	cGt/cAt																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157099427	157099432	+	inframe_deletion	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs1234257273		P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	93	539	1	ENST00000346085.5:c.381_386del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	122	CAGCAG/-																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527817	157527817	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	235	694	0	ENST00000346085.5:c.5547delC	p.Leu1850Ter	p.L1850*	ENST00000346085	NM_020732.3	1848	Ccc/cc																																																																														
AGO2	0	MSKCC	GRCh37	8	141549448	141549448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	171	432	0	ENST00000220592.5:c.2140C>T	p.Arg714Trp	p.R714W	ENST00000220592	NM_012154.3	714	Cgg/Tgg																																																																														
AMER1	0	MSKCC	GRCh37	X	63409891	63409892	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	141	444	0	ENST00000330258.3:c.3275dup	p.Glu1093Ter	p.E1093*	ENST00000330258	NM_152424.3	1092	cct/ccCt																																																																														
MED12	0	MSKCC	GRCh37	X	70349701	70349701	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	179	530	0	ENST00000374080.3:c.3863A>G	p.Gln1288Arg	p.Q1288R	ENST00000374080		1288	cAa/cGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	156	1017	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45860581	45860581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	132	1305	1	ENST00000391945.4:c.1426G>A	p.Val476Ile	p.V476I	ENST00000391945	NM_000400.3	476	Gtc/Atc																																																																														
ATM	0	MSKCC	GRCh37	11	108153607	108153607	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	40	326	0	ENST00000278616.4:c.3746+1G>C		p.X1249_splice	ENST00000278616	NM_000051.3	1249																																																																															
APC	0	MSKCC	GRCh37	5	112174823	112174823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	66	586	0	ENST00000257430.4:c.3532G>A	p.Asp1178Asn	p.D1178N	ENST00000257430	NM_000038.5	1178	Gat/Aat																																																																														
CDK6	0	MSKCC	GRCh37	7	92404120	92404120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	89	766	0	ENST00000265734.4:c.259C>T	p.Arg87Ter	p.R87*	ENST00000265734	NM_001259.6	87	Cga/Tga																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738240	145738240	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	75	1063	0	ENST00000428558.2:c.2745G>C	p.Met915Ile	p.M915I	ENST00000428558	NM_004260.3	915	atG/atC																																																																														
TEK	0	MSKCC	GRCh37	9	27203097	27203097	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1353	112	1022	0	ENST00000380036.4:c.2189T>C	p.Val730Ala	p.V730A	ENST00000380036	NM_000459.3	730	gTg/gCg																																																																														
MED12	0	MSKCC	GRCh37	X	70357646	70357646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1192	369	1278	0	ENST00000374080.3:c.5897C>A	p.Pro1966His	p.P1966H	ENST00000374080		1966	cCc/cAc																																																																														
FH	0	MSKCC	GRCh37	1	241680538	241680538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	516	869	0	ENST00000366560.3:c.211C>G	p.Gln71Glu	p.Q71E	ENST00000366560	NM_000143.3	71	Cag/Gag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32936755	32936755	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	274	748	0	ENST00000380152.3:c.7901T>C	p.Met2634Thr	p.M2634T	ENST00000380152		2634	aTg/aCg																																																																														
RB1	0	MSKCC	GRCh37	13	48954218	48954239	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGGTAAATTTTTTACTTTTAG	TAGGTAAATTTTTTACTTTTAG	-			P-0019095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	111	515	0	ENST00000267163.4:c.1421_1421+21del		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
ZFHX3	0	MSKCC	GRCh37	16	72992465	72992465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	730	1104	1	ENST00000268489.5:c.1580del	p.Asn527ThrfsTer9	p.N527Tfs*9	ENST00000268489	NM_006885.3	527	aAc/ac																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533578	63533578	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	478	948	3	ENST00000307078.5:c.1576A>C	p.Lys526Gln	p.K526Q	ENST00000307078	NM_004655.3	526	Aag/Cag																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469973	25469973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	557	841	1	ENST00000264709.3:c.1069G>T	p.Ala357Ser	p.A357S	ENST00000264709	NM_175629.2	357	Gcc/Tcc																																																																														
EGFR	0	MSKCC	GRCh37	7	55224286	55224286	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	521	945	0	ENST00000275493.2:c.1067T>G	p.Ile356Ser	p.I356S	ENST00000275493	NM_005228.3	356	aTt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	137	708	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	182	521	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873756	35873756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	165	558	1	ENST00000216797.5:c.95G>A	p.Ser32Asn	p.S32N	ENST00000216797	NM_020529.2	32	aGc/aAc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157521986	157521986	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	196	502	0	ENST00000346085.5:c.4258C>T	p.Gln1420Ter	p.Q1420*	ENST00000346085	NM_020732.3	1420	Cag/Tag																																																																														
PLCG2	0	MSKCC	GRCh37	16	81942153	81942153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	222	630	0	ENST00000359376.3:c.1690C>T	p.Arg564Trp	p.R564W	ENST00000359376	NM_002661.3	564	Cgg/Tgg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18280073	18280073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	61	137	0	ENST00000222254.8:c.2156C>T	p.Pro719Leu	p.P719L	ENST00000222254	NM_005027.3	719	cCg/cTg																																																																														
POLD1	0	MSKCC	GRCh37	19	50912786	50912786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61751955		P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	97	675	0	ENST00000440232.2:c.2017G>A	p.Glu673Lys	p.E673K	ENST00000440232	NM_002691.3	673	Gag/Aag																																																																														
KDR	0	MSKCC	GRCh37	4	55962423	55962423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	71	602	1	ENST00000263923.4:c.2701C>T	p.Leu901Phe	p.L901F	ENST00000263923	NM_002253.2	901	Ctt/Ttt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56171021	56171021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	40	244	0	ENST00000399503.3:c.1849G>C	p.Gly617Arg	p.G617R	ENST00000399503	NM_005921.1	617	Gga/Cga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	126	764	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	198	868	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032478	12032478	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	117	539	0	ENST00000353533.5:c.914T>G	p.Phe305Cys	p.F305C	ENST00000353533	NM_003010.3	305	tTt/tGt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11094972	11094972	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	167	972	0	ENST00000344626.4:c.146del	p.Pro49ArgfsTer45	p.P49Rfs*45	ENST00000344626	NM_003072.3	49	Ccg/cg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528596	8528596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	110	596	0	ENST00000356435.5:c.536G>T	p.Arg179Leu	p.R179L	ENST00000356435		179	cGa/cTa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099480	27099480	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0019099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	235	374	0	ENST00000324856.7:c.3715+2T>C		p.X1239_splice	ENST00000324856	NM_006015.4	1239																																																																															
SDHAF2	0	MSKCC	GRCh37	11	61205178	61205178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	66	762	0	ENST00000301761.2:c.118C>G	p.Pro40Ala	p.P40A	ENST00000301761	NM_017841.2	40	Cca/Gca																																																																														
EPHA7	0	MSKCC	GRCh37	6	93979242	93979242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	211	547	0	ENST00000369303.4:c.1586G>A	p.Arg529Lys	p.R529K	ENST00000369303	NM_004440.3	529	aGa/aAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518187	8518187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	176	497	0	ENST00000356435.5:c.1204G>A	p.Gly402Arg	p.G402R	ENST00000356435		402	Ggg/Agg																																																																														
ATRX	0	MSKCC	GRCh37	X	76849215	76849215	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	275	760	0	ENST00000373344.5:c.6061del	p.Val2021TyrfsTer29	p.V2021Yfs*29	ENST00000373344	NM_000489.3	2021	Gta/ta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	325	715	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	308	883	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
FLT4	0	MSKCC	GRCh37	5	180047995	180047995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	269	684	3	ENST00000261937.6:c.2180C>T	p.Ala727Val	p.A727V	ENST00000261937	NM_182925.4	727	gCg/gTg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	202	445	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	265	894	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274801	123274801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	39	657	2	ENST00000358487.5:c.1117C>A	p.Pro373Thr	p.P373T	ENST00000358487	NM_000141.4	373	Cca/Aca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485827	8485827	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	123	372	0	ENST00000356435.5:c.2990A>G	p.His997Arg	p.H997R	ENST00000356435		997	cAt/cGt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921543	39921543	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	269	743	0	ENST00000378444.4:c.4277T>C	p.Leu1426Pro	p.L1426P	ENST00000378444	NM_001123385.1	1426	cTa/cCa																																																																														
APC	0	MSKCC	GRCh37	5	112175191	112175192	+	synonymous_variant	Silent	DNP	TA	TA	CA			P-0019100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	179	349	0	ENST00000257430.4:c.3900delTinsC	p.AsnThr1300=	p.NT1300=	ENST00000257430	NM_000038.5	1300	aaTAcc/aaCAcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	175	402	0				ENST00000310581	NM_198253.2																																																																																
HRAS	0	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	134	710	0	ENST00000311189.7:c.38G>T	p.Gly13Val	p.G13V	ENST00000311189		13	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578536	7578536	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	464	976	1	ENST00000269305.4:c.394A>T	p.Lys132Ter	p.K132*	ENST00000269305	NM_001126112.2	132	Aag/Tag																																																																														
MED12	0	MSKCC	GRCh37	X	70356170	70356170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	578	975	0	ENST00000374080.3:c.5065G>A	p.Asp1689Asn	p.D1689N	ENST00000374080		1689	Gat/Aat																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	107	905	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446380	49446380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	307	799	1	ENST00000301067.7:c.1225C>T	p.Pro409Ser	p.P409S	ENST00000301067	NM_003482.3	409	Cca/Tca																																																																														
DIS3	0	MSKCC	GRCh37	13	73336199	73336199	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	49	466	0	ENST00000377767.4:c.2204A>T	p.Tyr735Phe	p.Y735F	ENST00000377767	NM_014953.3	735	tAt/tTt																																																																														
PRKD1	0	MSKCC	GRCh37	14	30194826	30194826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	291	969	0	ENST00000331968.5:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000331968	NM_002742.2	107	Gac/Tac																																																																														
MGA	0	MSKCC	GRCh37	15	42042509	42042509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	133	698	1	ENST00000219905.7:c.6704G>A	p.Arg2235Lys	p.R2235K	ENST00000219905	NM_001164273.1	2235	aGa/aAa																																																																														
SLX4	0	MSKCC	GRCh37	16	3632599	3632599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	87	860	2	ENST00000294008.3:c.5249C>T	p.Ala1750Val	p.A1750V	ENST00000294008	NM_032444.2	1750	gCg/gTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11143993	11143993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	206	663	0	ENST00000344626.4:c.3574C>G	p.Arg1192Gly	p.R1192G	ENST00000344626	NM_003072.3	1192	Cgc/Ggc																																																																														
CALR	0	MSKCC	GRCh37	19	13049951	13049951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	280	681	2	ENST00000316448.5:c.95G>T	p.Gly32Val	p.G32V	ENST00000316448	NM_004343.3	32	gGg/gTg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25464568	25464568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	538	792	0	ENST00000264709.3:c.1945G>A	p.Val649Met	p.V649M	ENST00000264709	NM_175629.2	649	Gtg/Atg																																																																														
PLK2	0	MSKCC	GRCh37	5	57754909	57754909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	145	459	0	ENST00000274289.3:c.281C>T	p.Ala94Val	p.A94V	ENST00000274289	NM_006622.3	94	gCa/gTa																																																																														
MDC1	0	MSKCC	GRCh37	6	30681013	30681013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	260	733	1	ENST00000376406.3:c.706G>A	p.Ala236Thr	p.A236T	ENST00000376406	NM_014641.2	236	Gct/Act																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508129	106508129	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	63	287	0	ENST00000359195.3:c.123G>C	p.Glu41Asp	p.E41D	ENST00000359195	NM_002649.2	41	gaG/gaC																																																																														
TSC1	0	MSKCC	GRCh37	9	135786501	135786501	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	319	671	0	ENST00000298552.3:c.1030-1G>A		p.X344_splice	ENST00000298552	NM_001162426.1	344																																																																															
KDM5C	0	MSKCC	GRCh37	X	53227763	53227763	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	475	821	0	ENST00000375401.3:c.2425A>T	p.Ser809Cys	p.S809C	ENST00000375401	NM_004187.3	809	Agt/Tgt																																																																														
ATRX	0	MSKCC	GRCh37	X	76920209	76920209	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	67	810	0	ENST00000373344.5:c.3868G>T	p.Gly1290Ter	p.G1290*	ENST00000373344	NM_000489.3	1290	Gga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	268	752	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	85	608	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
STK11	0	MSKCC	GRCh37	19	1221987	1221987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	136	810	4	ENST00000326873.7:c.902G>A	p.Arg301Gln	p.R301Q	ENST00000326873	NM_000455.4	301	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	108	447	1	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911548	114911548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	205	776	0	ENST00000543371.1:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000543371	NM_001198531.1	356	Gca/Aca																																																																														
GLI1	0	MSKCC	GRCh37	12	57859609	57859610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	160	646	0	ENST00000228682.2:c.671_672dup	p.Glu225ArgfsTer56	p.E225Rfs*56	ENST00000228682	NM_005269.2	221	-/GA																																																																														
CDK12	0	MSKCC	GRCh37	17	37680994	37680994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	290	817	1	ENST00000447079.4:c.3163G>A	p.Val1055Ile	p.V1055I	ENST00000447079	NM_015083.1	1055	Gtt/Att																																																																														
PTPRT	0	MSKCC	GRCh37	20	40864884	40864884	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	108	837	1	ENST00000373198.4:c.2384C>A	p.Ser795Tyr	p.S795Y	ENST00000373198	NM_133170.3	795	tCc/tAc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120768	94120768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	38	718	1	ENST00000369303.4:c.283G>A	p.Ala95Thr	p.A95T	ENST00000369303	NM_004440.3	95	Gca/Aca																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450345	50450345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	120	797	0	ENST00000331340.3:c.529C>G	p.Leu177Val	p.L177V	ENST00000331340	NM_006060.4	177	Ctc/Gtc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	92	600	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
MED12	0	MSKCC	GRCh37	X	70338671	70338671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	85	825	1	ENST00000374080.3:c.67G>T	p.Asp23Tyr	p.D23Y	ENST00000374080		23	Gat/Tat																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916948	178916950	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0019104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	45	693	0	ENST00000263967.3:c.337_339delCTC	p.Leu113del	p.L113del	ENST00000263967	NM_006218.2	112	aTCCtc/atc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	144	672	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932114	36932114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	42	532	0	ENST00000361632.4:c.2355G>T	p.Lys785Asn	p.K785N	ENST00000361632		785	aaG/aaT																																																																														
BARD1	0	MSKCC	GRCh37	2	215645784	215645792	+	inframe_deletion	In_Frame_Del	DEL	AACATTCAG	AACATTCAG	-			P-0019105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	129	672	0	ENST00000260947.4:c.806_814del	p.Ser269_Cys271del	p.S269_C271del	ENST00000260947	NM_000465.2	269	tCTGAATGTTtt/ttt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112515	115112516	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0019106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	179	828	0	ENST00000257566.3:c.1223_1224dup	p.Ser409AlafsTer224	p.S409Afs*224	ENST00000257566	NM_016569.3	408	-/GC																																																																														
TBX3	0	MSKCC	GRCh37	12	115115443	115115443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	174	766	0	ENST00000257566.3:c.883G>A	p.Asp295Asn	p.D295N	ENST00000257566	NM_016569.3	295	Gac/Aac																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098853	178098853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	186	897	0	ENST00000397062.3:c.192G>T	p.Lys64Asn	p.K64N	ENST00000397062	NM_006164.4	64	aaG/aaT																																																																														
TEK	0	MSKCC	GRCh37	9	27212867	27212867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	107	862	0	ENST00000380036.4:c.2849G>A	p.Arg950Gln	p.R950Q	ENST00000380036	NM_000459.3	950	cGg/cAg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	133	468	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	23	642	0	ENST00000263967.3:c.333G>C	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaC																																																																														
ERG	0	MSKCC	GRCh37	21	39795352	39795352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	175	640	0	ENST00000288319.7:c.368G>A	p.Arg123His	p.R123H	ENST00000288319	NM_182918.3	123	cGc/cAc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56488249	56488249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	671	715	0	ENST00000267101.3:c.1768C>T	p.Pro590Ser	p.P590S	ENST00000267101	NM_001982.3	590	Ccc/Tcc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060645	38060645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	277	914	0	ENST00000250448.2:c.1344C>A	p.Ser448Arg	p.S448R	ENST00000250448	NM_004496.3	448	agC/agA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0019108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	487	755	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
DDR2	0	MSKCC	GRCh37	1	162748428	162748429	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AG			P-0019108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	206	549	2	ENST00000367921.3:c.2342_2343delinsAG	p.Phe781Ter	p.F781*	ENST00000367921	NM_006182.2	781	tTC/tAG																																																																														
TP53	0	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	160	1081	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	140	629	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0019110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	69	610	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	112	684	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	76	427	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
ALK	0	MSKCC	GRCh37	2	29606697	29606697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	69	669	0	ENST00000389048.3:c.1183C>T	p.Arg395Cys	p.R395C	ENST00000389048	NM_004304.4	395	Cgt/Tgt																																																																														
RRAGC	0	MSKCC	GRCh37	1	39305278	39305278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	222	770	1	ENST00000373001.3:c.1147G>T	p.Ala383Ser	p.A383S	ENST00000373001	NM_022157.3	383	Gcc/Tcc																																																																														
DDR2	0	MSKCC	GRCh37	1	162731083	162731083	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	76	621	1	ENST00000367921.3:c.940del	p.Glu314AsnfsTer44	p.E314Nfs*44	ENST00000367921	NM_006182.2	313	tGg/tg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445649	49445649	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	591	1042	0	ENST00000301067.7:c.1817C>G	p.Ser606Cys	p.S606C	ENST00000301067	NM_003482.3	606	tCt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578419	7578420	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	192	673	0	ENST00000269305.4:c.510_511delinsTT	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	170	acGGag/acTTag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881620	37881620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	117	696	2	ENST00000269571.5:c.2690G>A	p.Arg897Gln	p.R897Q	ENST00000269571		897	cGg/cAg																																																																														
STK11	0	MSKCC	GRCh37	19	1221282	1221282	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	194	815	0	ENST00000326873.7:c.806del	p.Lys269ArgfsTer18	p.K269Rfs*18	ENST00000326873	NM_000455.4	269	Aag/ag																																																																														
DNMT1	0	MSKCC	GRCh37	19	10254614	10254614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	143	584	0	ENST00000340748.4:c.2896G>A	p.Glu966Lys	p.E966K	ENST00000340748		966	Gag/Aag																																																																														
CD79A	0	MSKCC	GRCh37	19	42383070	42383070	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	164	377	0	ENST00000221972.3:c.91del	p.Gln31ArgfsTer12	p.Q31Rfs*12	ENST00000221972	NM_021601.3	30	tgC/tg																																																																														
CXCR4	0	MSKCC	GRCh37	2	136873092	136873092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	85	406	1	ENST00000241393.3:c.406C>A	p.Leu136Met	p.L136M	ENST00000241393	NM_003467.2	136	Ctg/Atg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419902	41419902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	99	736	3	ENST00000373198.4:c.419G>T	p.Gly140Val	p.G140V	ENST00000373198	NM_133170.3	140	gGg/gTg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38963070	38963070	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	255	478	0	ENST00000357387.3:c.1474C>G	p.Leu492Val	p.L492V	ENST00000357387	NM_152756.3	492	Ctt/Gtt																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149504328	149504328	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	177	747	0	ENST00000261799.4:c.1874C>G	p.Ser625Cys	p.S625C	ENST00000261799	NM_002609.3	625	tCt/tGt																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045729	26045729	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	52	238	0	ENST00000540144.1:c.91C>G	p.Pro31Ala	p.P31A	ENST00000540144	NM_003531.2	31	Ccg/Gcg																																																																														
TEK	0	MSKCC	GRCh37	9	27168542	27168542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	113	883	1	ENST00000380036.4:c.414C>A	p.Asn138Lys	p.N138K	ENST00000380036	NM_000459.3	138	aaC/aaA																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323234	31323234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	199	560	0	ENST00000412585.2:c.755del	p.Thr252MetfsTer45	p.T252Mfs*45	ENST00000412585	NM_005514.6	252	aCt/at																																																																														
MEN1	0	MSKCC	GRCh37	11	64572627	64572627	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	287	794	1	ENST00000337652.1:c.1244del	p.Phe415SerfsTer35	p.F415Sfs*35	ENST00000337652	NM_130803.2	415	tTc/tc																																																																														
ATM	0	MSKCC	GRCh37	11	108117824	108117824	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	133	608	1	ENST00000278616.4:c.1035del	p.Ile346LeufsTer3	p.I346Lfs*3	ENST00000278616	NM_000051.3	345	ttG/tt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440074	49440074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	589	828	1	ENST00000301067.7:c.4552G>C	p.Asp1518His	p.D1518H	ENST00000301067	NM_003482.3	1518	Gac/Cac																																																																														
GLI1	0	MSKCC	GRCh37	12	57864145	57864145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	190	671	2	ENST00000228682.2:c.1622G>A	p.Arg541His	p.R541H	ENST00000228682	NM_005269.2	541	cGc/cAc																																																																														
PARK2	0	MSKCC	GRCh37	6	162394333	162394333	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0019114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	128	454	0	ENST00000366898.1:c.734+1G>C		p.X245_splice	ENST00000366898	NM_004562.2	245																																																																															
SOX17	0	MSKCC	GRCh37	8	55372376	55372376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1428	275	901	1	ENST00000297316.4:c.1066G>A	p.Gly356Arg	p.G356R	ENST00000297316	NM_022454.3	356	Ggg/Agg																																																																														
CDH1	0	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	337	621	2	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916932	178916932	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	203	655	0	ENST00000263967.3:c.319A>T	p.Asn107Tyr	p.N107Y	ENST00000263967	NM_006218.2	107	Aac/Tac																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120484280	120484280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	621	620	0	ENST00000256646.2:c.2850G>A	p.Met950Ile	p.M950I	ENST00000256646	NM_024408.3	950	atG/atA																																																																														
MYD88	0	MSKCC	GRCh37	3	38180199	38180199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	198	525	2	ENST00000396334.3:c.47C>T	p.Ala16Val	p.A16V	ENST00000396334	NM_002468.4	16	gCa/gTa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0019117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	57	877	2	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981240	201981241	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	62	814	0	ENST00000359651.3:c.321dup	p.Glu108Ter	p.E108*	ENST00000359651		107	ctt/cTtt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112269	115112269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	71	103	1	ENST00000257566.3:c.1471G>A	p.Ala491Thr	p.A491T	ENST00000257566	NM_016569.3	491	Gcg/Acg																																																																														
BCOR	0	MSKCC	GRCh37	X	39932255	39932255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	349	499	1	ENST00000378444.4:c.2344G>A	p.Asp782Asn	p.D782N	ENST00000378444	NM_001123385.1	782	Gac/Aac																																																																														
ATM	0	MSKCC	GRCh37	11	108172485	108172485	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	89	596	0	ENST00000278616.4:c.5288A>C	p.Tyr1763Ser	p.Y1763S	ENST00000278616	NM_000051.3	1763	tAt/tCt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3790400	3790400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	192	420	0	ENST00000262367.5:c.4133G>C	p.Arg1378Pro	p.R1378P	ENST00000262367	NM_004380.2	1378	cGg/cCg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10273944	10273944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	322	873	0	ENST00000330684.3:c.325G>T	p.Val109Leu	p.V109L	ENST00000330684	NM_001134407.1	109	Gta/Tta																																																																														
KDR	0	MSKCC	GRCh37	4	55955541	55955541	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	155	783	0	ENST00000263923.4:c.3404T>G	p.Met1135Arg	p.M1135R	ENST00000263923	NM_002253.2	1135	aTg/aGg																																																																														
MSH3	0	MSKCC	GRCh37	5	80160730	80160730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	162	657	0	ENST00000265081.6:c.3099G>T	p.Leu1033Phe	p.L1033F	ENST00000265081	NM_002439.4	1033	ttG/ttT																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965566	93965566	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	163	626	1	ENST00000369303.4:c.2362G>T	p.Glu788Ter	p.E788*	ENST00000369303	NM_004440.3	788	Gaa/Taa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87570408	87570408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	259	777	0	ENST00000277120.3:c.2148C>A	p.Asp716Glu	p.D716E	ENST00000277120		716	gaC/gaA																																																																														
BCL2L1	0	MSKCC	GRCh37	20	30309894	30309894	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145910874		P-0019122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	84	579	2	ENST00000307677.4:c.128C>T	p.Ser43Leu	p.S43L	ENST00000307677	NM_138578.1	43	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	161	562	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	152	484	2	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578396	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	170	525	0	ENST00000269305.4:c.534_536del	p.His179del	p.H179del	ENST00000269305	NM_001126112.2	178	caCCAt/cat																																																																														
AXIN1	0	MSKCC	GRCh37	16	396635	396635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	81	514	0	ENST00000262320.3:c.391G>T	p.Asp131Tyr	p.D131Y	ENST00000262320	NM_003502.3	131	Gac/Tac																																																																														
AXL	0	MSKCC	GRCh37	19	41745082	41745082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	119	474	0	ENST00000301178.4:c.1148T>C	p.Ile383Thr	p.I383T	ENST00000301178	NM_021913.4	383	aTa/aCa																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713226	30713226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	178	409	0	ENST00000359013.4:c.626T>A	p.Ile209Asn	p.I209N	ENST00000359013	NM_001024847.2	209	aTc/aAc																																																																														
STAG2	0	MSKCC	GRCh37	X	123220539	123220539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	137	572	3	ENST00000218089.9:c.3196C>T	p.Arg1066Trp	p.R1066W	ENST00000218089	NM_001042749.1	1066	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	143	603	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ETV6	0	MSKCC	GRCh37	12	11905411	11905411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	100	529	0	ENST00000396373.4:c.61G>A	p.Glu21Lys	p.E21K	ENST00000396373	NM_001987.4	21	Gag/Aag																																																																														
PRKD1	0	MSKCC	GRCh37	14	30135384	30135384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	126	615	1	ENST00000331968.5:c.434G>A	p.Arg145His	p.R145H	ENST00000331968	NM_002742.2	145	cGt/cAt																																																																														
CDH1	0	MSKCC	GRCh37	16	68842369	68842373	+	frameshift_variant	Frame_Shift_Del	DEL	AACTC	AACTC	GAG			P-0019124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	192	806	2	ENST00000261769.5:c.430_434delinsGAG	p.Asn144GlufsTer23	p.N144Efs*23	ENST00000261769	NM_004360.3	144	AACTCc/GAGc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36231817	36231817	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	209	960	1	ENST00000300305.3:c.567C>A	p.Tyr189Ter	p.Y189*	ENST00000300305		189	taC/taA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	218	740	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0019126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	195	583	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
APC	0	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	243	656	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	681	993	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	267	832	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249501	153249501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1316840275		P-0019126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	332	870	0	ENST00000281708.4:c.1277C>T	p.Ser426Leu	p.S426L	ENST00000281708	NM_033632.3	426	tCa/tTa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12028610	12028610	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0019126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	254	465	1	ENST00000353533.5:c.814-1G>T		p.X272_splice	ENST00000353533	NM_003010.3	272																																																																															
GRIN2A	0	MSKCC	GRCh37	16	9943623	9943623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	680	721	1	ENST00000330684.3:c.1318G>A	p.Val440Ile	p.V440I	ENST00000330684	NM_001134407.1	440	Gtc/Atc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30046638	30046638	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	243	803	2	ENST00000331968.5:c.2545C>T	p.Arg849Ter	p.R849*	ENST00000331968	NM_002742.2	849	Cga/Tga																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554408	63554408	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	643	906	1	ENST00000307078.5:c.331T>C	p.Trp111Arg	p.W111R	ENST00000307078	NM_004655.3	111	Tgg/Cgg																																																																														
APC	0	MSKCC	GRCh37	5	112176015	112176015	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	204	565	0	ENST00000257430.4:c.4724del	p.Leu1575GlnfsTer75	p.L1575Qfs*75	ENST00000257430	NM_000038.5	1575	cTa/ca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0019128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			772	87	605	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	62	1077	0	ENST00000269305.4:c.421T>C	p.Cys141Arg	p.C141R	ENST00000269305	NM_001126112.2	141	Tgc/Cgc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151835952	151835952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019128-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			701	52	546	1	ENST00000262189.6:c.14572G>A	p.Glu4858Lys	p.E4858K	ENST00000262189	NM_170606.2	4858	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	232	496	1	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	350	739	1	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112173590	112173590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	151	611	0	ENST00000257430.4:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000257430	NM_000038.5	767	Cag/Tag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223120	5223120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	490	863	2	ENST00000357368.4:c.2683G>A	p.Val895Met	p.V895M	ENST00000357368	NM_002850.3	895	Gtg/Atg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593557	48593557	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0019129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	137	251	2	ENST00000342988.3:c.1308G>C	p.Lys436Asn	p.K436N	ENST00000342988	NM_005359.5	436	aaG/aaC																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	499	784	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249022	55249022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	426	704	1	ENST00000275493.2:c.2320G>A	p.Val774Met	p.V774M	ENST00000275493	NM_005228.3	774	Gtg/Atg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	388	690	1	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
NEGR1	0	MSKCC	GRCh37	1	72241873	72241873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	53	484	1	ENST00000357731.5:c.517C>T	p.Arg173Ter	p.R173*	ENST00000357731	NM_173808.2	173	Cga/Tga																																																																														
IL10	0	MSKCC	GRCh37	1	206944275	206944275	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	400	580	0	ENST00000423557.1:c.355C>G	p.Leu119Val	p.L119V	ENST00000423557	NM_000572.2	119	Ctc/Gtc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78599594	78599594	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0019130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	260	315	1	ENST00000306801.3:c.265+1G>T		p.X89_splice	ENST00000306801	NM_020761.2	89																																																																															
FAM58A	0	MSKCC	GRCh37	X	152861646	152861646	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	111	749	0	ENST00000406277.2:c.107-1G>A		p.X36_splice	ENST00000406277	NM_152274.4	36																																																																															
EZH1	0	MSKCC	GRCh37	17	40865324	40865327	+	frameshift_variant	Frame_Shift_Del	DEL	ACTG	ACTG	-			P-0019131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	35	771	0	ENST00000428826.2:c.1104_1107del	p.Ser369LeufsTer55	p.S369Lfs*55	ENST00000428826		368	gtCAGT/gt																																																																														
MSH2	0	MSKCC	GRCh37	2	47702167	47702182	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTAGAACCAATGCA	ATGTAGAACCAATGCA	-			P-0019131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	65	481	0	ENST00000233146.2:c.1763_1778del	p.Tyr588Ter	p.Y588*	ENST00000233146	NM_000251.2	588	tATGTAGAACCAATGCAg/tg																																																																														
EGFR	0	MSKCC	GRCh37	7	55242467	55242483	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACA	AATTAAGAGAAGCAACA	CT			P-0019131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	172	923	4	ENST00000275493.2:c.2237_2253delinsCT	p.Glu746_Thr751delinsAla	p.E746_T751delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACA/gCT																																																																														
RBM10	0	MSKCC	GRCh37	X	47039418	47039421	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	-			P-0019131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	108	813	0	ENST00000329236.7:c.812_815del	p.Ile271SerfsTer135	p.I271Sfs*135	ENST00000329236	NM_001204466.1	270	ttCATC/tt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0019132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	16	706	0	ENST00000256078.4:c.34_35delinsAT	p.Gly12Ile	p.G12I	ENST00000256078	NM_033360.2	12	GGt/ATt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	357	282	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	237	198	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9776006	9776006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	82	415	0	ENST00000377346.4:c.470T>C	p.Leu157Pro	p.L157P	ENST00000377346	NM_005026.3	157	cTg/cCg																																																																														
YAP1	0	MSKCC	GRCh37	11	101981836	101981836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	659	504	0	ENST00000282441.5:c.257T>C	p.Met86Thr	p.M86T	ENST00000282441	NM_001130145.2	86	aTg/aCg																																																																														
TSHR	0	MSKCC	GRCh37	14	81422052	81422052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	223	152	0	ENST00000298171.2:c.28G>C	p.Val10Leu	p.V10L	ENST00000298171	NM_000369.2	10	Gtg/Ctg																																																																														
MGA	0	MSKCC	GRCh37	15	42054492	42054492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	193	304	1	ENST00000219905.7:c.7676G>T	p.Gly2559Val	p.G2559V	ENST00000219905	NM_001164273.1	2559	gGa/gTa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88428927	88428927	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0019133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	87	239	0	ENST00000360948.2:c.2173G>C	p.Glu725Gln	p.E725Q	ENST00000360948	NM_001012338.2	725	Gag/Cag																																																																														
TSC2	0	MSKCC	GRCh37	16	2111957	2111957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	305	611	0	ENST00000219476.3:c.1205G>T	p.Gly402Val	p.G402V	ENST00000219476	NM_000548.3	402	gGg/gTg																																																																														
TSC2	0	MSKCC	GRCh37	16	2126120	2126120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	353	681	1	ENST00000219476.3:c.2691C>A	p.Phe897Leu	p.F897L	ENST00000219476	NM_000548.3	897	ttC/ttA																																																																														
BRD4	0	MSKCC	GRCh37	19	15355054	15355054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	191	785	0	ENST00000263377.2:c.2569G>C	p.Val857Leu	p.V857L	ENST00000263377	NM_058243.2	857	Gtc/Ctc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149456889	149456889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	72	511	0	ENST00000286301.3:c.839C>G	p.Ala280Gly	p.A280G	ENST00000286301	NM_005211.3	280	gCc/gGc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149511645	149511645	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	288	184	0	ENST00000261799.4:c.1140G>C	p.Glu380Asp	p.E380D	ENST00000261799	NM_002609.3	380	gaG/gaC																																																																														
MYC	0	MSKCC	GRCh37	8	128750910	128751932	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGGAGCGGCTTCTCGGCCGCCGCCAAGCTCGTCTCAGAGAAGCTGGCCTCCTACCAGGCTGCGCGCAAAGACAGCGGCAGCCCGAACCCCGCCCGCGGCCACAGCGTCTGCTCCACCTCCAGCTTGTACCTGCAGGATCTGAGCGCCGCCGCCTCAGAGTGCATCGACCCCTCGGTGGTCTTCCCCTACCCTCTCAACGACAGCAGCTCGCCCAAGTCCTGCGCCTCGCAAGACTCCAGCGCCTTCTCTCCGTCCTCGGATTCTCTGCTCTCCTCGACGGAGTCCTCCCCGCAGGGCAGCCCCGAGCCCCTGGTGCTCCATGAGGAGACACCGCCCACCACCAGCAGCGACTCTGGTAAGCGAAGCCCGCCCAGGCCTGTCAAAAGTGGGCGGCTGGATACCTTTCCCATTTTCATTGGCAGCTTATTTAACGGGCCACTCTTATTAGGAAGGAGAGATAGCAGATCTGGAGAGATTTGGGAGCTCATCACCTCTGAAACCTTGGGCTTTAGCGTTTCCTCCCATCCCTTCCCCTTAGACTGCCCATGTTTGCAGCCCCCCTCCCCGTTTGTCTCCCACCCCTCAGGAATTTCATTTAGGTTTTTAAACCTTCTGGCTTATCTTACAACTCAATCCACTTCTTCTTACCTCCCGTTAACATTTTAATTGCCCTGGGGCGGGGTGGCAGGGAGTGTATGAATGAGGATAAGAGAGGATTGATCTCTGAGAGTGAATGAATTGCTTCCCTCTTAACTTCCGAGAAGTGGTGGGATTTAATGAACTATCTACAAAAATGAGGGGCTGTGTTTAGAGGCTAGGCAGGGCCTGCCTGAGTGCGGGAGCCAGTGAACTGCCTCAAGAGTGGGTGGGCTGAGGAGCTGGGATCTTCTCAGCCTATTTTGAACACTGAAAAGCAAATCCTTGCCAAAGTTGGACTTTTTTTTTTCTTTTATTCCTTCCCCCGCCCTCTTGGACTTTTGGCAAAACTGCAATTTTTTTTTTTTTATTTTTCATTTCCAGTA	GTGGAGCGGCTTCTCGGCCGCCGCCAAGCTCGTCTCAGAGAAGCTGGCCTCCTACCAGGCTGCGCGCAAAGACAGCGGCAGCCCGAACCCCGCCCGCGGCCACAGCGTCTGCTCCACCTCCAGCTTGTACCTGCAGGATCTGAGCGCCGCCGCCTCAGAGTGCATCGACCCCTCGGTGGTCTTCCCCTACCCTCTCAACGACAGCAGCTCGCCCAAGTCCTGCGCCTCGCAAGACTCCAGCGCCTTCTCTCCGTCCTCGGATTCTCTGCTCTCCTCGACGGAGTCCTCCCCGCAGGGCAGCCCCGAGCCCCTGGTGCTCCATGAGGAGACACCGCCCACCACCAGCAGCGACTCTGGTAAGCGAAGCCCGCCCAGGCCTGTCAAAAGTGGGCGGCTGGATACCTTTCCCATTTTCATTGGCAGCTTATTTAACGGGCCACTCTTATTAGGAAGGAGAGATAGCAGATCTGGAGAGATTTGGGAGCTCATCACCTCTGAAACCTTGGGCTTTAGCGTTTCCTCCCATCCCTTCCCCTTAGACTGCCCATGTTTGCAGCCCCCCTCCCCGTTTGTCTCCCACCCCTCAGGAATTTCATTTAGGTTTTTAAACCTTCTGGCTTATCTTACAACTCAATCCACTTCTTCTTACCTCCCGTTAACATTTTAATTGCCCTGGGGCGGGGTGGCAGGGAGTGTATGAATGAGGATAAGAGAGGATTGATCTCTGAGAGTGAATGAATTGCTTCCCTCTTAACTTCCGAGAAGTGGTGGGATTTAATGAACTATCTACAAAAATGAGGGGCTGTGTTTAGAGGCTAGGCAGGGCCTGCCTGAGTGCGGGAGCCAGTGAACTGCCTCAAGAGTGGGTGGGCTGAGGAGCTGGGATCTTCTCAGCCTATTTTGAACACTGAAAAGCAAATCCTTGCCAAAGTTGGACTTTTTTTTTTCTTTTATTCCTTCCCCCGCCCTCTTGGACTTTTGGCAAAACTGCAATTTTTTTTTTTTTATTTTTCATTTCCAGTA	-			P-0019133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	75	306	0	ENST00000377970.2:c.447_802+667del		p.X149_splice	ENST00000377970	NM_002467.4	149																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	52	759	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID2	0	MSKCC	GRCh37	12	46230604	46230604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	31	562	0	ENST00000334344.6:c.853C>T	p.Arg285Trp	p.R285W	ENST00000334344	NM_152641.2	285	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	54	719	0	ENST00000269305.4:c.503A>C	p.His168Pro	p.H168P	ENST00000269305	NM_001126112.2	168	cAc/cCc																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250677	26250677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	38	507	1	ENST00000446824.2:c.157C>T	p.Arg53Cys	p.R53C	ENST00000446824	NM_021018.2	53	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	247	1015	3	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																														
NTRK3	0	MSKCC	GRCh37	15	88669547	88669547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56394626		P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	143	1024	0	ENST00000360948.2:c.1351G>A	p.Val451Ile	p.V451I	ENST00000360948	NM_001012338.2	451	Gtc/Atc																																																																														
GLI1	0	MSKCC	GRCh37	12	57865684	57865684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	181	1088	0	ENST00000228682.2:c.3161A>G	p.Asp1054Gly	p.D1054G	ENST00000228682	NM_005269.2	1054	gAt/gGt																																																																														
TSC2	0	MSKCC	GRCh37	16	2112497	2112497	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	196	985	0	ENST00000219476.3:c.1258-1G>A		p.X420_splice	ENST00000219476	NM_000548.3	420																																																																															
PLCG2	0	MSKCC	GRCh37	16	81973570	81973571	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	143	895	3	ENST00000359376.3:c.3387_3388delinsAA	p.Ala1130Thr	p.A1130T	ENST00000359376	NM_002661.3	1129	ctGGca/ctAAca																																																																														
ACVR1	0	MSKCC	GRCh37	2	158595067	158595067	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	72	614	0	ENST00000263640.3:c.1280A>G	p.Tyr427Cys	p.Y427C	ENST00000263640	NM_001105.4	427	tAc/tGc																																																																														
IRS1	0	MSKCC	GRCh37	2	227661648	227661648	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	67	649	0	ENST00000305123.5:c.1807A>T	p.Ser603Cys	p.S603C	ENST00000305123	NM_005544.2	603	Agc/Tgc																																																																														
TOP1	0	MSKCC	GRCh37	20	39708821	39709804	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGTATTTTCTTAAAACTTTGACTTTTGAAAACAAAAAGGAGGAGTTTAAAGAATAAATGTGATGTGTTTCTTTATAATACATATAGAAACTGCATTAATTGGCTTTTACTCATTTGGAATTTGTGATTAATGGACTGATTTCTCTGAACTATGAGAAGTAGAGTTTGCTAAACAAGTAGTATACCCAAGGCTTACATGAAGATTATATAAATTTTTATTACTGAAAAGGCAATAGATATTTATTGTAGAAATTTCAAATAATACAGAATTCATGAAGAATAAATTATTTAAGTTACTTAAAATTTCTTATTGCCTACCACAGATAACTTAAAGCAGTTTCTCTTAGACCTATTCCTGTCAGACATTCTAAGTGAAGTTTCAGTGTGTAAAAATAATAAAACTGCTCATAAAACGGTCGAGGCTTACATGTATCTCTTTCCCCAGATTCAATGAGATTAAATTATATTCATTATTTTCACTCTTATATAGCTTACTATGCTATTGTTATAGTAGAAATTGGATGGAAAGGGAGAAGGGAAATACTTAGTGAACTCATTTGTATTCATTCAATATAGAATTTCTTTCCTCCACATTCCAGTGAGTTACTGCTATGTGGTAGCTAGTGTGCTGTGTGTTTGGTTCCCAAACTTTCATCTTTTATTTTTATTTATTTTATTTTATTTTTTTTCCCAGACTTTCATCTGATAATGATATTTATTTCTGCATATATCCCCCCACCCTATTTTGCTTCCAGGCCGGTGTAAGTGGTTTGTTTTGTTCTATATAGGGCTATAACTATTACTCTTTGGTCTGACCTTCATTATTTTCTCTATTTCTGTTAGTCTTGACCGTAGAATGCCCAGCCAAGAATAACAGTGATTACTCTTGCCATGGAGGCATCCAAGAGTTTGTAGGTCTCCTATGAGTGAGAACTCCTGAATCATAATTATGTTAACTGTGTATTCATGTTCCCCTTTCTAG	GTGAGTATTTTCTTAAAACTTTGACTTTTGAAAACAAAAAGGAGGAGTTTAAAGAATAAATGTGATGTGTTTCTTTATAATACATATAGAAACTGCATTAATTGGCTTTTACTCATTTGGAATTTGTGATTAATGGACTGATTTCTCTGAACTATGAGAAGTAGAGTTTGCTAAACAAGTAGTATACCCAAGGCTTACATGAAGATTATATAAATTTTTATTACTGAAAAGGCAATAGATATTTATTGTAGAAATTTCAAATAATACAGAATTCATGAAGAATAAATTATTTAAGTTACTTAAAATTTCTTATTGCCTACCACAGATAACTTAAAGCAGTTTCTCTTAGACCTATTCCTGTCAGACATTCTAAGTGAAGTTTCAGTGTGTAAAAATAATAAAACTGCTCATAAAACGGTCGAGGCTTACATGTATCTCTTTCCCCAGATTCAATGAGATTAAATTATATTCATTATTTTCACTCTTATATAGCTTACTATGCTATTGTTATAGTAGAAATTGGATGGAAAGGGAGAAGGGAAATACTTAGTGAACTCATTTGTATTCATTCAATATAGAATTTCTTTCCTCCACATTCCAGTGAGTTACTGCTATGTGGTAGCTAGTGTGCTGTGTGTTTGGTTCCCAAACTTTCATCTTTTATTTTTATTTATTTTATTTTATTTTTTTTCCCAGACTTTCATCTGATAATGATATTTATTTCTGCATATATCCCCCCACCCTATTTTGCTTCCAGGCCGGTGTAAGTGGTTTGTTTTGTTCTATATAGGGCTATAACTATTACTCTTTGGTCTGACCTTCATTATTTTCTCTATTTCTGTTAGTCTTGACCGTAGAATGCCCAGCCAAGAATAACAGTGATTACTCTTGCCATGGAGGCATCCAAGAGTTTGTAGGTCTCCTATGAGTGAGAACTCCTGAATCATAATTATGTTAACTGTGTATTCATGTTCCCCTTTCTAG	-			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	19	466	0	ENST00000361337.2:c.431+1_432-1del		p.X144_splice	ENST00000361337	NM_003286.2	144																																																																															
TOP1	0	MSKCC	GRCh37	20	39725980	39726852	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTACTGTAGCCCATGTGTTAATATCCTAGTACCTTGCAAAACAATCAAGTACTAAGTAATAAATTATCATTTTGCAAAACATTTCCTGATGTAAAATTTGAGTTGTATGGATTTTGTTGTATTTAAACTTGCGTATTTTTTGTCTTCATTTACTATATTATGTAGGGTTTCTGTCCAACAAGAGTACTTGTATATCTTTGCTATTGGCTCTCATGTGATGGCAGGTAGGTGGGGGTTATCAGATTAGGCCAAACAGAAAACCTCAACTCCAGTTGCGCACAGGAAAGTTTGTCGCTGCAGGACTGCCCCGTGTCTGCTGTTGCAAAGAGAAATGTTAATCTGATGTCCCTCTCGCTGTTAATTCTTGCTCATTTATTTTAGGTACTTTCTACTCTTGAAACCACATATACTATATTTGCCTAGGTGATTTTTTAAAATCTCATTATTCTCAATTTGGATAATGTGGACAGAGGCAGCAGTAAAGTTTACTTCCTGAACTAGCTCAGAAAAAGCAGACTTAATAAATGAATAGAATAGGGGTAATGTTTCCAAGAGAGAATCAGTATGGGATTTCAAACTTGTATTCATAATGCCTGGGGGCTGTGTGCCACGGAGTCTAAGAAACCACATAAGAATTCATTTTTTTCCATGATAAGTCATTTTAAAACATTTTAATATTAGTAAGTACATATTTTATAATAAAGTAATACAACTGTATTTTTTTGTTTTTTCAAAATTCATTAATTGAGATTGGCTACTTCCAGAAACCTTTGACTGAAAAAATGGTGCTTGGGTGTATTTGCAAAGAAACCCAAGGACTTATTAGTGTATTTTCGTTGTTTTTCTTTCATCTCCCCATTTTCTTTTGACT	AGGTACTGTAGCCCATGTGTTAATATCCTAGTACCTTGCAAAACAATCAAGTACTAAGTAATAAATTATCATTTTGCAAAACATTTCCTGATGTAAAATTTGAGTTGTATGGATTTTGTTGTATTTAAACTTGCGTATTTTTTGTCTTCATTTACTATATTATGTAGGGTTTCTGTCCAACAAGAGTACTTGTATATCTTTGCTATTGGCTCTCATGTGATGGCAGGTAGGTGGGGGTTATCAGATTAGGCCAAACAGAAAACCTCAACTCCAGTTGCGCACAGGAAAGTTTGTCGCTGCAGGACTGCCCCGTGTCTGCTGTTGCAAAGAGAAATGTTAATCTGATGTCCCTCTCGCTGTTAATTCTTGCTCATTTATTTTAGGTACTTTCTACTCTTGAAACCACATATACTATATTTGCCTAGGTGATTTTTTAAAATCTCATTATTCTCAATTTGGATAATGTGGACAGAGGCAGCAGTAAAGTTTACTTCCTGAACTAGCTCAGAAAAAGCAGACTTAATAAATGAATAGAATAGGGGTAATGTTTCCAAGAGAGAATCAGTATGGGATTTCAAACTTGTATTCATAATGCCTGGGGGCTGTGTGCCACGGAGTCTAAGAAACCACATAAGAATTCATTTTTTTCCATGATAAGTCATTTTAAAACATTTTAATATTAGTAAGTACATATTTTATAATAAAGTAATACAACTGTATTTTTTTGTTTTTTCAAAATTCATTAATTGAGATTGGCTACTTCCAGAAACCTTTGACTGAAAAAATGGTGCTTGGGTGTATTTGCAAAGAAACCCAAGGACTTATTAGTGTATTTTCGTTGTTTTTCTTTCATCTCCCCATTTTCTTTTGACT	-			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	32	558	0	ENST00000361337.2:c.852+2_853del		p.X284_splice	ENST00000361337	NM_003286.2	284																																																																															
TOP1	0	MSKCC	GRCh37	20	39741564	39742586	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGAGAGCATCTTCCCATCGGCATTGTCTAGTGTTGAGCTTAACAAAGGGAGTTTCTGCTCTGCCCCAGGCCCTGTGCCACATACTGTATATCACAACTCAACATACATATATTTGTATGTAAAACTGAATCAAAAGTTGCACAAAACAATGCTTAGCCTTACTGTGAGCAGTAGATTCTGATCTTTTTTTAACTCTATTTCATTCCTTTAGAAAGTTGGTTATAACTTATAAAATTGTTTAAATAAACCATGCAGGTATCACCATTATATAGTTTTAAAGACCACGCTCTAGAGGAGATCAATTTCTTGGTACTCACGAGAAGAAAAAAAAGTTCATGTTTTTCCCCCAGTCTTGTATTTTAACATAAGTTCTGAATTGTCTCAAAATTCACACTAGCTTTTTGAGTTTGATTGCCCAGAGTAGCAGCACTCCCTCATTTGCTGCCTTATTTAATTTTTTTTTTCCTTTTCTCCATCCCTATTTCAGAGGACAGAATAGAAAGAAAAGGAGCATGAATATTTAACATCCCTATAGATTTCATAGTGAGTGGGGGAGGAAGTAACACTGCAGAATCCAGAGTTCCCAGGCCATGCTGACTGATGCTGTGGCTTCAAACAGAATTGGGAGGCTTCTGTTTTGGATGCCTAGAAATTGCATAAGGGTCAAAAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGAACACGAGGTCAAGAGACCATCCTGGCCAATGTGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAAAAATAAAAATTGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTCGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGACGGAGCTTGCAGTGAGCCAAAATTGCGCCATTGCACTCTAGCCTGGCGACAGAGCGAGACTGTCTCAAAAAAAAAAAAAAAAAAAACACAGAACGAAATTGTGTAAGGATCATGTCTCTTCCATTCATGCTCA	AGGTGAGAGCATCTTCCCATCGGCATTGTCTAGTGTTGAGCTTAACAAAGGGAGTTTCTGCTCTGCCCCAGGCCCTGTGCCACATACTGTATATCACAACTCAACATACATATATTTGTATGTAAAACTGAATCAAAAGTTGCACAAAACAATGCTTAGCCTTACTGTGAGCAGTAGATTCTGATCTTTTTTTAACTCTATTTCATTCCTTTAGAAAGTTGGTTATAACTTATAAAATTGTTTAAATAAACCATGCAGGTATCACCATTATATAGTTTTAAAGACCACGCTCTAGAGGAGATCAATTTCTTGGTACTCACGAGAAGAAAAAAAAGTTCATGTTTTTCCCCCAGTCTTGTATTTTAACATAAGTTCTGAATTGTCTCAAAATTCACACTAGCTTTTTGAGTTTGATTGCCCAGAGTAGCAGCACTCCCTCATTTGCTGCCTTATTTAATTTTTTTTTTCCTTTTCTCCATCCCTATTTCAGAGGACAGAATAGAAAGAAAAGGAGCATGAATATTTAACATCCCTATAGATTTCATAGTGAGTGGGGGAGGAAGTAACACTGCAGAATCCAGAGTTCCCAGGCCATGCTGACTGATGCTGTGGCTTCAAACAGAATTGGGAGGCTTCTGTTTTGGATGCCTAGAAATTGCATAAGGGTCAAAAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGAACACGAGGTCAAGAGACCATCCTGGCCAATGTGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAAAAATAAAAATTGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTCGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGACGGAGCTTGCAGTGAGCCAAAATTGCGCCATTGCACTCTAGCCTGGCGACAGAGCGAGACTGTCTCAAAAAAAAAAAAAAAAAAAACACAGAACGAAATTGTGTAAGGATCATGTCTCTTCCATTCATGCTCA	-			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	32	535	1	ENST00000361337.2:c.1451_1453-24del		p.X484_splice	ENST00000361337	NM_003286.2	484																																																																															
KDR	0	MSKCC	GRCh37	4	55979629	55979629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	128	752	0	ENST00000263923.4:c.818T>C	p.Val273Ala	p.V273A	ENST00000263923	NM_002253.2	273	gTa/gCa																																																																														
DROSHA	0	MSKCC	GRCh37	5	31437388	31437388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	102	1138	1	ENST00000344624.3:c.2900G>T	p.Arg967Leu	p.R967L	ENST00000344624		967	cGg/cTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878466	151878466	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	162	856	0	ENST00000262189.6:c.6479C>G	p.Ser2160Cys	p.S2160C	ENST00000262189	NM_170606.2	2160	tCt/tGt																																																																														
CDK4	0	MSKCC	GRCh37	12	58143285	58143285	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	80	478	0	ENST00000257904.6:c.635C>T	p.Pro212Leu	p.P212L	ENST00000257904	NM_000075.3	212	cCt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	483	851	0	ENST00000269305.4:c.826G>C	p.Ala276Pro	p.A276P	ENST00000269305	NM_001126112.2	276	Gcc/Ccc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149453055	149453055	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	57	426	1	ENST00000286301.3:c.891G>T	p.Glu297Asp	p.E297D	ENST00000286301	NM_005211.3	297	gaG/gaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0019138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	49	1022	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212488657	212488657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	63	756	0	ENST00000342788.4:c.2192C>T	p.Thr731Met	p.T731M	ENST00000342788	NM_005235.2	731	aCg/aTg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30135409	30135409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	39	650	0	ENST00000331968.5:c.409G>A	p.Ala137Thr	p.A137T	ENST00000331968	NM_002742.2	137	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	43	902	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	23	456	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	23	456	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	23	456	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	120	874	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0019142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	78	697	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	141	933	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
APC	0	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0019142-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	57	398	0	ENST00000257430.4:c.3807_3808delAT	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a																																																																														
TBX3	0	MSKCC	GRCh37	12	115118946	115118946	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	47	398	0	ENST00000257566.3:c.395T>A	p.Met132Lys	p.M132K	ENST00000257566	NM_016569.3	132	aTg/aAg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99478106	99478106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	74	464	1	ENST00000268035.6:c.3010G>A	p.Glu1004Lys	p.E1004K	ENST00000268035	NM_000875.3	1004	Gaa/Aaa																																																																														
KEAP1	9817	MSKCC	GRCh37	19	10600336	10600336	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs751088754		P-0019143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	78	733	0	ENST00000171111.5:c.1519C>T	p.Arg507Ter	p.R507*	ENST00000171111	NM_203500.1	507	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577571	7577571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	105	642	1	ENST00000269305.4:c.710T>A	p.Met237Lys	p.M237K	ENST00000269305	NM_001126112.2	237	aTg/aAg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118350932	118350932	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	56	708	0	ENST00000534358.1:c.3613T>C	p.Tyr1205His	p.Y1205H	ENST00000534358	NM_005933.3	1205	Tac/Cac																																																																														
SLX4	0	MSKCC	GRCh37	16	3658869	3658869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	140	704	1	ENST00000294008.3:c.97G>A	p.Asp33Asn	p.D33N	ENST00000294008	NM_032444.2	33	Gac/Aac																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266827	198266827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	70	837	2	ENST00000335508.6:c.2105G>A	p.Arg702Gln	p.R702Q	ENST00000335508	NM_012433.2	702	cGg/cAg																																																																														
BARD1	0	MSKCC	GRCh37	2	215661822	215661822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	54	668	0	ENST00000260947.4:c.178C>T	p.Pro60Ser	p.P60S	ENST00000260947	NM_000465.2	60	Cct/Tct																																																																														
EGFR	0	MSKCC	GRCh37	7	55221738	55221738	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	126	714	0	ENST00000275493.2:c.782A>G	p.Lys261Arg	p.K261R	ENST00000275493	NM_005228.3	261	aAg/aGg																																																																														
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	222	463	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	247	804	1	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420825	49420825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	69	550	0	ENST00000301067.7:c.14924G>A	p.Arg4975His	p.R4975H	ENST00000301067	NM_003482.3	4975	cGt/cAt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56488199	56488199	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	80	507	0	ENST00000267101.3:c.1718G>C	p.Cys573Ser	p.C573S	ENST00000267101	NM_001982.3	573	tGt/tCt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602427	10602427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	549	666	0	ENST00000171111.5:c.1151C>T	p.Pro384Leu	p.P384L	ENST00000171111	NM_203500.1	384	cCc/cTc																																																																														
SRC	0	MSKCC	GRCh37	20	36012632	36012632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019146-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	83	323	0	ENST00000358208.4:c.76G>A	p.Gly26Ser	p.G26S	ENST00000358208		26	Ggc/Agc																																																																														
RB1	0	MSKCC	GRCh37	13	49033970	49033970	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	1002	649	0	ENST00000267163.4:c.2106+1G>A		p.X702_splice	ENST00000267163	NM_000321.2	702																																																																															
ATRX	0	MSKCC	GRCh37	X	76939458	76939467	+	frameshift_variant	Frame_Shift_Del	DEL	TTTGGTATTT	TTTGGTATTT	-			P-0019148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	403	364	0	ENST00000373344.5:c.1281_1290del	p.Asn428SerfsTer5	p.N428Sfs*5	ENST00000373344	NM_000489.3	427	aaAAATACCAAA/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	129	533	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212293194	212293194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	112	588	2	ENST00000342788.4:c.2658G>T	p.Trp886Cys	p.W886C	ENST00000342788	NM_005235.2	886	tgG/tgT																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	138	714	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	79	478	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
YAP1	0	MSKCC	GRCh37	11	102098261	102098261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	197	698	0	ENST00000282441.5:c.1225G>A	p.Val409Ile	p.V409I	ENST00000282441	NM_001130145.2	409	Gtc/Atc																																																																														
NUP93	0	MSKCC	GRCh37	16	56873446	56873469	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	TGAAGCTGGTGCCCCTGAATCAGG	TGAAGCTGGTGCCCCTGAATCAGG	-			P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	257	704	2	ENST00000308159.5:c.2150_2173del	p.Leu717_Glu725delinsTer	p.L717_E725delins*	ENST00000308159	NM_014669.4	717	tTGAAGCTGGTGCCCCTGAATCAGGaa/taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	1113	913	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
NF1	0	MSKCC	GRCh37	17	29701109	29701109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	208	659	2	ENST00000358273.4:c.8456G>A	p.Ser2819Asn	p.S2819N	ENST00000358273	NM_001042492.2	2819	aGc/aAc																																																																														
STAT3	0	MSKCC	GRCh37	17	40481554	40481576	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGCTCCTCCCACATACCAAGT	GGAGCTCCTCCCACATACCAAGT	-			P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	413	672	0	ENST00000264657.5:c.1229_1233+18del		p.X410_splice	ENST00000264657	NM_139276.2	410																																																																															
BRCA1	0	MSKCC	GRCh37	17	41219635	41219637	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	428	733	1	ENST00000357654.3:c.5062_5064del	p.Val1688del	p.V1688del	ENST00000357654	NM_007294.3	1688	GTT/-																																																																														
PREX2	0	MSKCC	GRCh37	8	68968085	68968085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	560	725	0	ENST00000288368.4:c.1114C>A	p.Gln372Lys	p.Q372K	ENST00000288368	NM_024870.2	372	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	265	943	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	144	725	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	321	808	2	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	243	736	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa																																																																														
CDK6	0	MSKCC	GRCh37	7	92355102	92355102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	81	274	0	ENST00000265734.4:c.375G>C	p.Met125Ile	p.M125I	ENST00000265734	NM_001259.6	125	atG/atC																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094488	27094488	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	150	369	0	ENST00000324856.7:c.3196C>T	p.Gln1066Ter	p.Q1066*	ENST00000324856	NM_006015.4	1066	Cag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108173586	108173586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	49	486	0	ENST00000278616.4:c.5326G>A	p.Glu1776Lys	p.E1776K	ENST00000278616	NM_000051.3	1776	Gaa/Aaa																																																																														
MSH2	0	MSKCC	GRCh37	2	47705646	47705646	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	58	495	0	ENST00000233146.2:c.2446C>G	p.Gln816Glu	p.Q816E	ENST00000233146	NM_000251.2	816	Cag/Gag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098959	178098959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	199	468	0	ENST00000397062.3:c.86A>G	p.Asp29Gly	p.D29G	ENST00000397062	NM_006164.4	29	gAt/gGt																																																																														
VHL	0	MSKCC	GRCh37	3	10183703	10183703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	274	779	3	ENST00000256474.2:c.172C>T	p.Arg58Trp	p.R58W	ENST00000256474	NM_000551.3	58	Cgg/Tgg																																																																														
TET2	0	MSKCC	GRCh37	4	106158148	106158148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	158	476	0	ENST00000380013.4:c.3049G>A	p.Asp1017Asn	p.D1017N	ENST00000380013	NM_001127208.2	1017	Gat/Aat																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367345	50367346	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	133	431	2	ENST00000331340.3:c.152_153delinsAT	p.Arg51Asn	p.R51N	ENST00000331340	NM_006060.4	51	aGA/aAT																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509379	106509379	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	243	659	3	ENST00000359195.3:c.1373T>C	p.Val458Ala	p.V458A	ENST00000359195	NM_002649.2	458	gTt/gCt																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841218	15841218	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	221	297	0	ENST00000307771.7:c.1302C>G	p.Ser434Arg	p.S434R	ENST00000307771	NM_005089.3	434	agC/agG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	142	773	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	132	583	2	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	132	583	2	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	203	1045	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	132	583	2	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
PTPRS	0	MSKCC	GRCh37	19	5229534	5229534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019163-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	44	250	1	ENST00000357368.4:c.2317C>T	p.Arg773Cys	p.R773C	ENST00000357368	NM_002850.3	773	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	139	785	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	36	907	3	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984782	11984782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	24	783	3	ENST00000353533.5:c.328C>T	p.Arg110Ter	p.R110*	ENST00000353533	NM_003010.3	110	Cga/Tga																																																																														
TBX3	0	MSKCC	GRCh37	12	115112399	115112400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	172	801	0	ENST00000257566.3:c.1340dup	p.Gly448ArgfsTer244	p.G448Rfs*244	ENST00000257566	NM_016569.3	447	cgc/cgGc																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0019165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	93	692	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
CBFB	0	MSKCC	GRCh37	16	67070659	67070659	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0019165-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	63	339	0	ENST00000412916.2:c.282+1G>T		p.X94_splice	ENST00000412916		94																																																																															
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	367	745	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	231	564	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	259	557	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367275	50367275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	183	404	0	ENST00000331340.3:c.82G>A	p.Asp28Asn	p.D28N	ENST00000331340	NM_006060.4	28	Gat/Aat																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	423	864	2	ENST00000171111.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000171111	NM_203500.1	470	Cgt/Tgt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146112	38146112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5189	296	750	1	ENST00000317025.8:c.3394G>A	p.Asp1132Asn	p.D1132N	ENST00000317025	NM_023034.1	1132	Gat/Aat																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146952	38146952	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5351	321	974	0	ENST00000317025.8:c.3190G>C	p.Glu1064Gln	p.E1064Q	ENST00000317025	NM_023034.1	1064	Gaa/Caa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	83	625	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68863559	68863560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	122	792	0	ENST00000261769.5:c.2301dup	p.Asp768Ter	p.D768*	ENST00000261769	NM_004360.3	766	-/T																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155737	56155738	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	82	478	0	ENST00000399503.3:c.830dup	p.Pro278AlafsTer23	p.P278Afs*23	ENST00000399503	NM_005921.1	277	gtg/gTtg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56180518	56180518	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	44	509	0	ENST00000399503.3:c.3847del	p.Glu1283SerfsTer5	p.E1283Sfs*5	ENST00000399503	NM_005921.1	1283	Gag/ag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845415	151845415	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	107	822	1	ENST00000262189.6:c.13597C>T	p.Arg4533Ter	p.R4533*	ENST00000262189	NM_170606.2	4533	Cga/Tga																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89352506	89352506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019177-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			604	273	781	3	ENST00000301030.4:c.833C>T	p.Thr278Met	p.T278M	ENST00000301030	NM_001256183.1	278	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	318	776	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CBFB	0	MSKCC	GRCh37	16	67063628	67063628	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0019180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	219	665	0	ENST00000412916.2:c.79-2A>G		p.X27_splice	ENST00000412916		27																																																																															
EPHA5	0	MSKCC	GRCh37	4	66218788	66218788	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019180-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	80	698	0	ENST00000273854.3:c.2270A>T	p.Glu757Val	p.E757V	ENST00000273854	NM_004439.5	757	gAg/gTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	115	637	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391024	89391024	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	54	628	0	ENST00000336596.2:c.1095delA	p.Lys365AsnfsTer6	p.K365Nfs*6	ENST00000336596	NM_005233.5	364	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	40	406	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
FLT4	0	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	60	726	2	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																														
APC	0	MSKCC	GRCh37	5	112177091	112177091	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	55	737	0	ENST00000257430.4:c.5803del	p.Gln1935SerfsTer35	p.Q1935Sfs*35	ENST00000257430	NM_000038.5	1934	Ccc/cc																																																																														
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	32	287	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827927	40827927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	60	550	2	ENST00000373198.4:c.2501G>A	p.Arg834His	p.R834H	ENST00000373198	NM_133170.3	834	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	71	670	6	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692958	89692958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	50	559	0	ENST00000371953.3:c.442G>A	p.Ala148Thr	p.A148T	ENST00000371953	NM_000314.4	148	Gca/Aca																																																																														
ATM	0	MSKCC	GRCh37	11	108199950	108199950	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	50	368	0	ENST00000278616.4:c.7292A>C	p.Lys2431Thr	p.K2431T	ENST00000278616	NM_000051.3	2431	aAa/aCa																																																																														
RB1	0	MSKCC	GRCh37	13	48923144	48923144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	37	425	0	ENST00000267163.4:c.596delT	p.Leu199TyrfsTer2	p.L199Yfs*2	ENST00000267163	NM_000321.2	198	Ttt/tt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88679814	88679814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	37	370	0	ENST00000360948.2:c.649G>A	p.Val217Ile	p.V217I	ENST00000360948	NM_001012338.2	217	Gtc/Atc																																																																														
TSC2	0	MSKCC	GRCh37	16	2103415	2103415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	73	628	1	ENST00000219476.3:c.298G>A	p.Ala100Thr	p.A100T	ENST00000219476	NM_000548.3	100	Gcg/Acg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45372138	45372138	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	78	706	0	ENST00000262160.6:c.1031A>C	p.Glu344Ala	p.E344A	ENST00000262160	NM_005901.5	344	gAa/gCa																																																																														
DNMT1	0	MSKCC	GRCh37	19	10291084	10291084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	97	647	0	ENST00000340748.4:c.387del	p.Lys130AsnfsTer129	p.K130Nfs*129	ENST00000340748		129	ccC/cc																																																																														
JAK3	0	MSKCC	GRCh37	19	17945737	17945737	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	91	726	0	ENST00000458235.1:c.2123A>C	p.Lys708Thr	p.K708T	ENST00000458235	NM_000215.3	708	aAg/aCg																																																																														
MSH2	0	MSKCC	GRCh37	2	47635601	47635603	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	62	578	0	ENST00000233146.2:c.279_281del	p.Leu94del	p.L94del	ENST00000233146	NM_000251.2	91	gaTCTt/gat																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170146	32170147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	53	659	0	ENST00000375023.3:c.3461dup	p.Gly1156ArgfsTer24	p.G1156Rfs*24	ENST00000375023	NM_004557.3	1154	ggc/ggGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100390	27100390	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	319	673	0	ENST00000324856.7:c.4101+1G>A		p.X1367_splice	ENST00000324856	NM_006015.4	1367																																																																															
GATA3	0	MSKCC	GRCh37	10	8111488	8111488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	184	908	0	ENST00000346208.3:c.974C>G	p.Thr325Ser	p.T325S	ENST00000346208		325	aCc/aGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	178	627	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
EED	0	MSKCC	GRCh37	11	85966294	85966294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	44	387	0	ENST00000263360.6:c.391G>A	p.Glu131Lys	p.E131K	ENST00000263360	NM_003797.3	131	Gaa/Aaa																																																																														
TBX3	0	MSKCC	GRCh37	12	115115435	115115437	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0019188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	174	723	0	ENST00000257566.3:c.889_891del	p.Asn297del	p.N297del	ENST00000257566	NM_016569.3	297	AAC/-																																																																														
CDH1	0	MSKCC	GRCh37	16	68844139	68844139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	219	697	1	ENST00000261769.5:c.727G>A	p.Glu243Lys	p.E243K	ENST00000261769	NM_004360.3	243	Gag/Aag																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	106	530	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25457242	25457242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147001633		P-0019190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	15	741	1	ENST00000264709.3:c.2645G>A	p.Arg882His	p.R882H	ENST00000264709	NM_175629.2	882	cGc/cAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0019190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	218	529	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
ERCC5	0	MSKCC	GRCh37	13	103518999	103518999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	105	478	0	ENST00000355739.4:c.2337C>A	p.Phe779Leu	p.F779L	ENST00000355739	NM_000123.3	779	ttC/ttA																																																																														
CBFB	0	MSKCC	GRCh37	16	67116114	67116114	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0019190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	123	400	0	ENST00000412916.2:c.400-2A>G		p.X134_splice	ENST00000412916		134																																																																															
ESR1	0	MSKCC	GRCh37	6	152265456	152265456	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	184	613	0	ENST00000206249.3:c.909G>C	p.Lys303Asn	p.K303N	ENST00000206249	NM_000125.3	303	aaG/aaC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	57	571	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	21	723	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CBFB	0	MSKCC	GRCh37	16	67100603	67100603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	51	466	0	ENST00000412916.2:c.301A>G	p.Met101Val	p.M101V	ENST00000412916		101	Atg/Gtg																																																																														
MTOR	0	MSKCC	GRCh37	1	11177124	11177124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	94	816	0	ENST00000361445.4:c.6953C>G	p.Thr2318Ser	p.T2318S	ENST00000361445	NM_004958.3	2318	aCc/aGc																																																																														
SETD2	0	MSKCC	GRCh37	3	47163301	47163301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019191-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	46	638	0	ENST00000409792.3:c.2825G>A	p.Gly942Glu	p.G942E	ENST00000409792	NM_014159.6	942	gGa/gAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	74	949	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	42	762	1				ENST00000310581	NM_198253.2																																																																																
ARID2	0	MSKCC	GRCh37	12	46244652	46244652	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	88	1161	0	ENST00000334344.6:c.2746C>T	p.Gln916Ter	p.Q916*	ENST00000334344	NM_152641.2	916	Caa/Taa																																																																														
ARID2	0	MSKCC	GRCh37	12	46215240	46215240	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	27	477	0	ENST00000334344.6:c.675G>A	p.Trp225Ter	p.W225*	ENST00000334344	NM_152641.2	225	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0019195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	612	1189	11	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
MGA	0	MSKCC	GRCh37	15	41961169	41961169	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	271	658	1	ENST00000219905.7:c.77T>G	p.Val26Gly	p.V26G	ENST00000219905	NM_001164273.1	26	gTc/gGc																																																																														
FLT4	0	MSKCC	GRCh37	5	180048608	180048608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	462	1099	1	ENST00000261937.6:c.1954G>T	p.Val652Leu	p.V652L	ENST00000261937	NM_182925.4	652	Gtg/Ttg																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	202	812	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
ERF	0	MSKCC	GRCh37	19	42752920	42752920	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1319	283	1772	0	ENST00000222329.4:c.1344G>C	p.Glu448Asp	p.E448D	ENST00000222329	NM_006494.2	448	gaG/gaC																																																																														
RHOA	0	MSKCC	GRCh37	3	49405954	49405954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	143	1320	0	ENST00000418115.1:c.184G>T	p.Gly62Trp	p.G62W	ENST00000418115	NM_001664.2	62	Ggg/Tgg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52620674	52620674	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	29	607	0	ENST00000394830.3:c.3079C>T	p.Arg1027Ter	p.R1027*	ENST00000394830	NM_018313.4	1027	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0019202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	29	964	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	18	1022	0	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20159750	20159750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	11	413	0	ENST00000379607.5:c.9G>C	p.Lys3Asn	p.K3N	ENST00000379607	NM_001412.3	3	aaG/aaC																																																																														
RB1	0	MSKCC	GRCh37	13	48955457	48955457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	18	617	0	ENST00000267163.4:c.1573G>A	p.Ala525Thr	p.A525T	ENST00000267163	NM_000321.2	525	Gcc/Acc																																																																														
ATM	0	MSKCC	GRCh37	11	108172396	108172396	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	149	517	0	ENST00000278616.4:c.5199del	p.Val1734LeufsTer4	p.V1734Lfs*4	ENST00000278616	NM_000051.3	1733	gcT/gc																																																																														
STK11	0	MSKCC	GRCh37	19	1219343	1219372	+	inframe_deletion	In_Frame_Del	DEL	GCGTGTGTGGCATGCAGGAAATGCTGGACA	GCGTGTGTGGCATGCAGGAAATGCTGGACA	-			P-0019203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	141	827	0	ENST00000326873.7:c.400_429del	p.Cys134_Val143del	p.C134_V143del	ENST00000326873	NM_000455.4	132	tGCGTGTGTGGCATGCAGGAAATGCTGGACAgc/tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			147	241	758	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	94	459	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																														
STK11	0	MSKCC	GRCh37	19	1207146	1207146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	629	1292	0	ENST00000326873.7:c.234G>T	p.Lys78Asn	p.K78N	ENST00000326873	NM_000455.4	78	aaG/aaT																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074115	8074115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	93	419	0	ENST00000377482.5:c.544C>A	p.Leu182Ile	p.L182I	ENST00000377482	NM_018948.3	182	Ctt/Att																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137339	64137339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			542	471	819	2	ENST00000334205.4:c.1771G>T	p.Asp591Tyr	p.D591Y	ENST00000334205	NM_003942.2	591	Gac/Tac																																																																														
MRE11A	0	MSKCC	GRCh37	11	94204739	94204739	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	60	432	0	ENST00000323929.3:c.845+1G>T		p.X282_splice	ENST00000323929	NM_005591.3	282																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11134241	11134241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	449	810	0	ENST00000344626.4:c.2907C>A	p.His969Gln	p.H969Q	ENST00000344626	NM_003072.3	969	caC/caA																																																																														
PLK2	0	MSKCC	GRCh37	5	57753199	57753199	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			138	124	348	0	ENST00000274289.3:c.817A>T	p.Met273Leu	p.M273L	ENST00000274289	NM_006622.3	273	Atg/Ttg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50444428	50444428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019206-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	239	521	0	ENST00000331340.3:c.358G>T	p.Asp120Tyr	p.D120Y	ENST00000331340	NM_006060.4	120	Gat/Tat																																																																														
BAP1	0	MSKCC	GRCh37	3	52443757	52443757	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	58	741	0	ENST00000460680.1:c.40C>T	p.Leu14Phe	p.L14F	ENST00000460680	NM_004656.3	14	Ctc/Ttc																																																																														
FLT3	0	MSKCC	GRCh37	13	28601363	28601369	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAAGT	ATCAAGT	-			P-0019213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	38	691	0	ENST00000241453.7:c.2063_2069del	p.Tyr688PhefsTer14	p.Y688Ffs*14	ENST00000241453	NM_004119.2	688	tACTTGATt/tt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52682407	52682408	+	missense_variant	Missense_Mutation	DNP	CG	CG	GA			P-0019213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	91	626	4	ENST00000394830.3:c.765_766delinsTC	p.Ala256Pro	p.A256P	ENST00000394830	NM_018313.4	255	ctCGca/ctTCca																																																																														
TSC1	0	MSKCC	GRCh37	9	135772727	135772741	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTCCTCTGAAAGAT	TGTCCTCTGAAAGAT	GAAAGG			P-0019213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	94	600	2	ENST00000298552.3:c.2814-9_2819delinsCCTTTC		p.X938_splice	ENST00000298552	NM_001162426.1	938																																																																															
LATS1	0	MSKCC	GRCh37	6	150001524	150001524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	277	683	0	ENST00000253339.5:c.2080C>T	p.Arg694Cys	p.R694C	ENST00000253339		694	Cgt/Tgt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984774	11984774	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	291	643	0	ENST00000353533.5:c.322del	p.Ile108LeufsTer20	p.I108Lfs*20	ENST00000353533	NM_003010.3	107	gAa/ga																																																																														
EGFR	0	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0019215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	312	733	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																														
ETV1	0	MSKCC	GRCh37	7	13935595	13935595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	83	420	0	ENST00000405192.2:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000405192	NM_001163147.1	421	Gag/Aag																																																																														
STK11	0	MSKCC	GRCh37	19	1220546	1220578	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GGCACTCCCTGAGGGCTGCACGGCACCGCCACA	GGCACTCCCTGAGGGCTGCACGGCACCGCCACA	-			P-0019215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	153	555	0	ENST00000326873.7:c.598-28_602del		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																															
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0019217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	87	581	0	ENST00000269305.4:c.782+1G>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
SF3B1	0	MSKCC	GRCh37	2	198262738	198262738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	109	725	2	ENST00000335508.6:c.3237C>A	p.Asn1079Lys	p.N1079K	ENST00000335508	NM_012433.2	1079	aaC/aaA																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713421	40713421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199947379		P-0019217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	28	770	0	ENST00000373198.4:c.4094C>T	p.Thr1365Met	p.T1365M	ENST00000373198	NM_133170.3	1365	aCg/aTg																																																																														
SETD2	0	MSKCC	GRCh37	3	47061251	47061265	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TCTTTTCTGAATACT	TCTTTTCTGAATACT	-			P-0019217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	119	586	0	ENST00000409792.3:c.7416_7430del	p.Val2473_Glu2477del	p.V2473_E2477del	ENST00000409792	NM_014159.6	2472	gaAGTATTCAGAAAAGAg/gag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52623232	52623232	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	131	447	0	ENST00000394830.3:c.2819del	p.Leu940ProfsTer68	p.L940Pfs*68	ENST00000394830	NM_018313.4	940	cTc/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	49	936	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	214	843	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	25	646	2	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367257	50367257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	34	471	0	ENST00000331340.3:c.64G>A	p.Asp22Asn	p.D22N	ENST00000331340	NM_006060.4	22	Gat/Aat																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073616	8073616	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	35	398	1	ENST00000377482.5:c.1043del	p.Pro348ArgfsTer104	p.P348Rfs*104	ENST00000377482	NM_018948.3	348	cCg/cg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98211539	98211539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	108	532	1	ENST00000331920.6:c.3616C>T	p.Arg1206Cys	p.R1206C	ENST00000331920	NM_000264.3	1206	Cgc/Tgc																																																																														
PARP1	0	MSKCC	GRCh37	1	226578235	226578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	58	727	0	ENST00000366794.5:c.493A>G	p.Lys165Glu	p.K165E	ENST00000366794	NM_001618.3	165	Aag/Gag																																																																														
FGFR1	0	MSKCC	GRCh37	8	38279386	38279386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	80	1058	0	ENST00000425967.3:c.1103G>C	p.Gly368Ala	p.G368A	ENST00000425967	NM_001174067.1	368	gGg/gCg																																																																														
ATRX	0	MSKCC	GRCh37	X	76872129	76872129	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	93	744	0	ENST00000373344.5:c.5518A>T	p.Thr1840Ser	p.T1840S	ENST00000373344	NM_000489.3	1840	Act/Tct																																																																														
TP53	0	MSKCC	GRCh37	17	7577587	7577587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	31	677	0	ENST00000269305.4:c.694A>T	p.Ile232Phe	p.I232F	ENST00000269305	NM_001126112.2	232	Atc/Ttc																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	39	725	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942792	44942793	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	59	956	0	ENST00000377967.4:c.3372_3373insC	p.Thr1125HisfsTer26	p.T1125Hfs*26	ENST00000377967	NM_021140.2	1124	-/C																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0019226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	303	537	0				ENST00000310581	NM_198253.2																																																																																
IRF4	0	MSKCC	GRCh37	6	405045	405045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	171	547	1	ENST00000380956.4:c.1127G>A	p.Arg376His	p.R376H	ENST00000380956	NM_001195286.1	376	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	73	677	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
ARAF	0	MSKCC	GRCh37	X	47424714	47424714	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	263	434	0	ENST00000377045.4:c.526del	p.Leu176Ter	p.L176*	ENST00000377045	NM_001654.4	174	cgC/cg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412575	63412575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	179	272	0	ENST00000330258.3:c.592G>A	p.Glu198Lys	p.E198K	ENST00000330258	NM_152424.3	198	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			926	60	836	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720709	89720709	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	21	165	0	ENST00000371953.3:c.860C>G	p.Ser287Ter	p.S287*	ENST00000371953	NM_000314.4	287	tCa/tGa																																																																														
SETD2	0	MSKCC	GRCh37	3	47164711	47164711	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201984344		P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			334	19	299	1	ENST00000409792.3:c.1415G>A	p.Arg472His	p.R472H	ENST00000409792	NM_014159.6	472	cGt/cAt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098534	11098534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			783	57	739	0	ENST00000344626.4:c.1052G>A	p.Arg351His	p.R351H	ENST00000344626	NM_003072.3	351	cGc/cAc																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			399	29	466	2	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10273974	10273974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			876	52	881	2	ENST00000330684.3:c.295G>A	p.Val99Met	p.V99M	ENST00000330684	NM_001134407.1	99	Gtg/Atg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692895	89692895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	42	494	0	ENST00000371953.3:c.379G>A	p.Gly127Arg	p.G127R	ENST00000371953	NM_000314.4	127	Gga/Aga																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291062	15291062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	62	961	4	ENST00000263388.2:c.3148C>T	p.Arg1050Trp	p.R1050W	ENST00000263388	NM_000435.2	1050	Cgg/Tgg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060912	38060912	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	24	390	0	ENST00000250448.2:c.1077delC	p.Ile360Ter	p.I360*	ENST00000250448	NM_004496.3	359	ccC/cc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			910	74	938	0	ENST00000298229.2:c.1322delA	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			633	37	694	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057887	27057896	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCATACCC	CTCCATACCC	-			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			878	53	856	0	ENST00000324856.7:c.1599_1608del	p.Tyr534SerfsTer82	p.Y534Sfs*82	ENST00000324856	NM_006015.4	532	gCTCCATACCCc/gc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27059207	27059207	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			626	51	608	0	ENST00000324856.7:c.1848delC	p.Ser617GlnfsTer2	p.S617Qfs*2	ENST00000324856	NM_006015.4	615	gCc/gc																																																																														
TET1	0	MSKCC	GRCh37	10	70406573	70406573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			815	77	820	0	ENST00000373644.4:c.4087G>T	p.Gly1363Ter	p.G1363*	ENST00000373644	NM_030625.2	1363	Gga/Tga																																																																														
FGF4	0	MSKCC	GRCh37	11	69589675	69589675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	10	171	0	ENST00000168712.1:c.178G>A	p.Val60Met	p.V60M	ENST00000168712	NM_002007.2	60	Gtg/Atg																																																																														
TSC2	0	MSKCC	GRCh37	16	2134476	2134476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			752	51	838	0	ENST00000219476.3:c.4253C>T	p.Ser1418Leu	p.S1418L	ENST00000219476	NM_000548.3	1418	tCa/tTa																																																																														
MAPK3	0	MSKCC	GRCh37	16	30134473	30134473	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	44	581	0	ENST00000263025.4:c.58del	p.Val20SerfsTer12	p.V20Sfs*12	ENST00000263025	NM_002746.2	20	Gtc/tc																																																																														
CTCF	0	MSKCC	GRCh37	16	67650767	67650767	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	45	569	0	ENST00000264010.4:c.1072T>G	p.Tyr358Asp	p.Y358D	ENST00000264010	NM_006565.3	358	Tac/Gac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993168	72993168	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			917	51	889	0	ENST00000268489.5:c.877T>C	p.Tyr293His	p.Y293H	ENST00000268489	NM_006885.3	293	Tac/Cac																																																																														
CEBPA	0	MSKCC	GRCh37	19	33793054	33793056	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	33	469	2	ENST00000498907.2:c.265_267del	p.Glu89del	p.E89del	ENST00000498907	NM_004364.3	89	GAG/-																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	74	1095	6	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																														
SOS1	0	MSKCC	GRCh37	2	39262581	39262581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			712	65	852	0	ENST00000402219.2:c.925G>T	p.Asp309Tyr	p.D309Y	ENST00000402219	NM_005633.3	309	Gat/Tat																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45649972	45649972	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	33	556	0	ENST00000407780.3:c.863G>A	p.Gly288Asp	p.G288D	ENST00000407780	NM_001283052.1	288	gGt/gAt																																																																														
MST1R	0	MSKCC	GRCh37	3	49928630	49928630	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	34	542	0	ENST00000296474.3:c.3644T>C	p.Met1215Thr	p.M1215T	ENST00000296474	NM_002447.2	1215	aTg/aCg																																																																														
PLK2	0	MSKCC	GRCh37	5	57753328	57753328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	46	522	1	ENST00000274289.3:c.796C>A	p.Leu266Met	p.L266M	ENST00000274289	NM_006622.3	266	Ctg/Atg																																																																														
AMER1	0	MSKCC	GRCh37	X	63410444	63410444	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019231-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	39	638	0	ENST00000330258.3:c.2723A>T	p.Asn908Ile	p.N908I	ENST00000330258	NM_152424.3	908	aAt/aTt																																																																														
MITF	0	MSKCC	GRCh37	3	70001022	70001022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	66	577	0	ENST00000352241.4:c.922G>A	p.Asp308Asn	p.D308N	ENST00000352241	NM_198159.2	308	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	107	1036	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
HGF	0	MSKCC	GRCh37	7	81374361	81374361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	80	703	1	ENST00000222390.5:c.701G>A	p.Arg234His	p.R234H	ENST00000222390	NM_000601.4	234	cGc/cAc																																																																														
NF1	0	MSKCC	GRCh37	17	29546122	29546122	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	64	582	0	ENST00000358273.4:c.1627C>T	p.Gln543Ter	p.Q543*	ENST00000358273	NM_001042492.2	543	Cag/Tag																																																																														
CIC	0	MSKCC	GRCh37	19	42796784	42796784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	97	1099	3	ENST00000575354.2:c.3242C>T	p.Pro1081Leu	p.P1081L	ENST00000575354	NM_015125.3	1081	cCg/cTg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62324164	62324164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	38	764	0	ENST00000508582.2:c.2731C>A	p.Pro911Thr	p.P911T	ENST00000508582		911	Ccc/Acc																																																																														
NBN	0	MSKCC	GRCh37	8	90983434	90983434	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	57	627	0	ENST00000265433.3:c.669del	p.Thr226HisfsTer5	p.T226Hfs*5	ENST00000265433	NM_002485.4	223	aaA/aa																																																																														
PREX2	0	MSKCC	GRCh37	8	68995575	68995575	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	132	579	0	ENST00000288368.4:c.1979T>A	p.Leu660Ter	p.L660*	ENST00000288368	NM_024870.2	660	tTa/tAa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0019238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	201	925	6	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0019238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	90	447	1	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098803	178098803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	176	891	0	ENST00000397062.3:c.242G>A	p.Gly81Asp	p.G81D	ENST00000397062	NM_006164.4	81	gGt/gAt																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88672106	88672106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	125	602	0	ENST00000372037.3:c.640C>A	p.Gln214Lys	p.Q214K	ENST00000372037	NM_004329.2	214	Caa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692971	89692971	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	163	784	0	ENST00000371953.3:c.455T>C	p.Leu152Pro	p.L152P	ENST00000371953	NM_000314.4	152	cTa/cCa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717693	89717714	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTGAGTTCCCTCAGCCGT	TACTTTGAGTTCCCTCAGCCGT	-			P-0019238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	113	771	0	ENST00000371953.3:c.721_742del	p.Phe241LeufsTer8	p.F241Lfs*8	ENST00000371953	NM_000314.4	240	TACTTTGAGTTCCCTCAGCCGTta/ta																																																																														
KDM5A	0	MSKCC	GRCh37	12	498230	498230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	58	303	2	ENST00000399788.2:c.28G>T	p.Ala10Ser	p.A10S	ENST00000399788	NM_001042603.1	10	Gcg/Tcg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45872210	45872210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	170	913	0	ENST00000391945.4:c.224G>A	p.Arg75Lys	p.R75K	ENST00000391945	NM_000400.3	75	aGa/aAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561414	9561414	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	117	608	0	ENST00000353224.5:c.368del	p.Asn123MetfsTer50	p.N123Mfs*50	ENST00000353224	NM_177990.2	123	aAt/at																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	112	941	0	ENST00000263967.3:c.278G>C	p.Arg93Pro	p.R93P	ENST00000263967	NM_006218.2	93	cGg/cCg																																																																														
DUSP4	0	MSKCC	GRCh37	8	29207389	29207389	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	73	375	0	ENST00000240100.2:c.407A>G	p.Glu136Gly	p.E136G	ENST00000240100	NM_001394.6	136	gAg/gGg																																																																														
ABL1	0	MSKCC	GRCh37	9	133760183	133760183	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	117	651	0	ENST00000318560.5:c.2506G>C	p.Ala836Pro	p.A836P	ENST00000318560	NM_005157.4	836	Gct/Cct																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0019239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	43	734	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032279	10032279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	41	593	0	ENST00000330684.3:c.544G>A	p.Glu182Lys	p.E182K	ENST00000330684	NM_001134407.1	182	Gaa/Aaa																																																																														
TERT	0	MSKCC	GRCh37	5	1294264	1294264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	28	641	1	ENST00000310581.5:c.737C>T	p.Pro246Leu	p.P246L	ENST00000310581	NM_198253.2	246	cCg/cTg																																																																														
JAK3	0	MSKCC	GRCh37	19	17946828	17946828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	39	750	0	ENST00000458235.1:c.1819G>A	p.Ala607Thr	p.A607T	ENST00000458235	NM_000215.3	607	Gcc/Acc																																																																														
PAK7	0	MSKCC	GRCh37	20	9560989	9560989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	24	443	0	ENST00000353224.5:c.793G>A	p.Asp265Asn	p.D265N	ENST00000353224	NM_177990.2	265	Gac/Aac																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169953	32169953	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202197092		P-0019239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	49	876	0	ENST00000375023.3:c.3655C>T	p.Arg1219Trp	p.R1219W	ENST00000375023	NM_004557.3	1219	Cgg/Tgg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8436605	8436605	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201031030		P-0019239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	40	766	0	ENST00000356435.5:c.4073C>T	p.Ser1358Phe	p.S1358F	ENST00000356435		1358	tCc/tTc																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20159743	20159743	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	30	301	0	ENST00000379607.5:c.16G>A	p.Gly6Ser	p.G6S	ENST00000379607	NM_001412.3	6	Ggt/Agt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0019240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	353	451	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577546	7577547	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0019240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	484	623	2	ENST00000269305.4:c.734_735delinsTT	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGC/gTT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	325	333	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	809	754	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942817	44942817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	438	782	1	ENST00000377967.4:c.3397C>T	p.Gln1133Ter	p.Q1133*	ENST00000377967	NM_021140.2	1133	Caa/Taa																																																																														
MTOR	0	MSKCC	GRCh37	1	11316995	11316995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	117	364	0	ENST00000361445.4:c.499G>T	p.Ala167Ser	p.A167S	ENST00000361445	NM_004958.3	167	Gca/Tca																																																																														
B2M	0	MSKCC	GRCh37	15	45003751	45003751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	91	390	1	ENST00000558401.1:c.7C>T	p.Arg3Cys	p.R3C	ENST00000558401	NM_004048.2	3	Cgc/Tgc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420186	88420186	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	279	560	0	ENST00000360948.2:c.2500T>C	p.Tyr834His	p.Y834H	ENST00000360948	NM_001012338.2	834	Tac/Cac																																																																														
ASXL1	0	MSKCC	GRCh37	20	30956900	30956901	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0019242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	148	593	1	ENST00000375687.4:c.226_227delinsTT	p.Gly76Phe	p.G76F	ENST00000375687	NM_015338.5	76	GGc/TTc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715698	30715699	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0019242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	72	309	2	ENST00000359013.4:c.1431_1432delinsAT	p.Val478Leu	p.V478L	ENST00000359013	NM_001024847.2	477	ctGGtg/ctATtg																																																																														
MST1R	0	MSKCC	GRCh37	3	49928959	49928959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	200	771	1	ENST00000296474.3:c.3407G>T	p.Arg1136Leu	p.R1136L	ENST00000296474	NM_002447.2	1136	cGt/cTt																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149497350	149497350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	314	596	2	ENST00000261799.4:c.2968G>A	p.Ala990Thr	p.A990T	ENST00000261799	NM_002609.3	990	Gcc/Acc																																																																														
NBN	0	MSKCC	GRCh37	8	90967761	90967761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	39	181	0	ENST00000265433.3:c.1147G>C	p.Glu383Gln	p.E383Q	ENST00000265433	NM_002485.4	383	Gaa/Caa																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	165	609	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458037	120458040	+	frameshift_variant	Frame_Shift_Del	DEL	CCAG	CCAG	-			P-0019243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	100	505	0	ENST00000256646.2:c.7305_7308del	p.Trp2436GlnfsTer3	p.W2436Qfs*3	ENST00000256646	NM_024408.3	2435	gaCTGG/ga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	112	739	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	102	609	3	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	123	549	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	72	480	1	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717733	89717733	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	239	615	0	ENST00000371953.3:c.758T>A	p.Ile253Asn	p.I253N	ENST00000371953	NM_000314.4	253	aTc/aAc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213899	66213899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	97	534	0	ENST00000273854.3:c.2531G>T	p.Trp844Leu	p.W844L	ENST00000273854	NM_004439.5	844	tGg/tTg																																																																														
APC	0	MSKCC	GRCh37	5	112136997	112136997	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	120	531	0	ENST00000257430.4:c.751G>T	p.Glu251Ter	p.E251*	ENST00000257430	NM_000038.5	251	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	533	887	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	233	661	2	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
PALB2	0	MSKCC	GRCh37	16	23619279	23619279	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	324	883	4	ENST00000261584.4:c.3256C>T	p.Arg1086Ter	p.R1086*	ENST00000261584	NM_024675.3	1086	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	101	588	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0019251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	222	948	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
FGF3	0	MSKCC	GRCh37	11	69625348	69625348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	87	595	2	ENST00000334134.2:c.445G>A	p.Ala149Thr	p.A149T	ENST00000334134	NM_005247.2	149	Gcc/Acc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573484	48573484	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	51	290	0	ENST00000342988.3:c.68T>C	p.Leu23Ser	p.L23S	ENST00000342988	NM_005359.5	23	tTg/tCg																																																																														
BTK	0	MSKCC	GRCh37	X	100626680	100626680	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	120	447	1	ENST00000308731.7:c.250G>T	p.Glu84Ter	p.E84*	ENST00000308731	NM_000061.2	84	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	363	1056	1	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	341	600	0	ENST00000304494.5:c.281T>A	p.Leu94Gln	p.L94Q	ENST00000304494	NM_000077.4	94	cTg/cAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	341	600	0	ENST00000304494.5:c.281T>A	p.Leu94Gln	p.L94Q	ENST00000304494	NM_000077.4	94	cTg/cAg																																																																														
RB1	0	MSKCC	GRCh37	13	48937091	48937091	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0019253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	65	347	0	ENST00000267163.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000267163	NM_000321.2	287	Gag/Tag																																																																														
TET1	0	MSKCC	GRCh37	10	70406186	70406186	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	282	954	0	ENST00000373644.4:c.3700A>G	p.Thr1234Ala	p.T1234A	ENST00000373644	NM_030625.2	1234	Aca/Gca																																																																														
CHEK1	0	MSKCC	GRCh37	11	125497560	125497560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	112	379	0	ENST00000428830.2:c.124A>G	p.Met42Val	p.M42V	ENST00000428830	NM_001114121.2	42	Atg/Gtg																																																																														
MAPK3	0	MSKCC	GRCh37	16	30134500	30134500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	134	418	0	ENST00000263025.4:c.31G>T	p.Gly11Cys	p.G11C	ENST00000263025	NM_002746.2	11	Ggc/Tgc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228152	36228152	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	440	704	0	ENST00000222270.7:c.7538A>T	p.Glu2513Val	p.E2513V	ENST00000222270	NM_014727.1	2513	gAg/gTg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99169319	99169319	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	227	742	0	ENST00000074304.5:c.1249C>T	p.Gln417Ter	p.Q417*	ENST00000074304	NM_001134224.1	417	Cag/Tag																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851636	134851636	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	397	599	0	ENST00000398015.3:c.1042A>G	p.Thr348Ala	p.T348A	ENST00000398015	NM_004441.4	348	Aca/Gca																																																																														
HGF	0	MSKCC	GRCh37	7	81374411	81374411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	191	609	0	ENST00000222390.5:c.651G>C	p.Glu217Asp	p.E217D	ENST00000222390	NM_000601.4	217	gaG/gaC																																																																														
HGF	0	MSKCC	GRCh37	7	81374422	81374422	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	184	604	0	ENST00000222390.5:c.640T>G	p.Cys214Gly	p.C214G	ENST00000222390	NM_000601.4	214	Tgc/Ggc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	65	793	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	208	907	16	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
MCL1	0	MSKCC	GRCh37	1	150551831	150551831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	21	298	2	ENST00000369026.2:c.176G>A	p.Gly59Glu	p.G59E	ENST00000369026	NM_021960.4	59	gGa/gAa																																																																														
PGR	0	MSKCC	GRCh37	11	100998306	100998306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	10	127	0	ENST00000325455.5:c.1496C>T	p.Ser499Phe	p.S499F	ENST00000325455	NM_001202474.3	499	tCc/tTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427906	49427906	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	72	835	0	ENST00000301067.7:c.10684G>T	p.Glu3562Ter	p.E3562*	ENST00000301067	NM_003482.3	3562	Gag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435967	49435967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	123	945	0	ENST00000301067.7:c.6014G>A	p.Arg2005His	p.R2005H	ENST00000301067	NM_003482.3	2005	cGc/cAc																																																																														
TBX3	0	MSKCC	GRCh37	12	115114115	115114116	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	AC			P-0019255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	113	494	0	ENST00000257566.3:c.1099+1_1099+2dup		p.X367_splice	ENST00000257566	NM_016569.3	367																																																																															
STAT3	0	MSKCC	GRCh37	17	40475322	40475322	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	39	871	0	ENST00000264657.5:c.1704C>G	p.Ile568Met	p.I568M	ENST00000264657	NM_139276.2	568	atC/atG																																																																														
GNAS	0	MSKCC	GRCh37	20	57466878	57466878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1342	83	709	0	ENST00000371085.3:c.97G>C	p.Asp33His	p.D33H	ENST00000371085	NM_000516.4	33	Gac/Cac																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114203	73114203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	78	749	0	ENST00000356692.5:c.839C>G	p.Ser280Cys	p.S280C	ENST00000356692		280	tCt/tGt																																																																														
KDR	0	MSKCC	GRCh37	4	55976648	55976648	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	84	924	0	ENST00000263923.4:c.1177A>G	p.Thr393Ala	p.T393A	ENST00000263923	NM_002253.2	393	Aca/Gca																																																																														
HIST1H3E	8353	MSKCC	GRCh37	6	26225722	26225722	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1426924061		P-0019255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	80	727	3	ENST00000360408.1:c.340C>T	p.His114Tyr	p.H114Y	ENST00000360408	NM_003532.2	114	Cat/Tat																																																																														
ROS1	0	MSKCC	GRCh37	6	117739636	117739636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	66	629	0	ENST00000368508.3:c.157C>G	p.Leu53Val	p.L53V	ENST00000368508	NM_002944.2	53	Ctg/Gtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	220	668	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0019257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	297	767	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	291	909	6	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	533	681	0	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																														
STAG2	0	MSKCC	GRCh37	X	123176495	123176495	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0019257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	108	436	0	ENST00000218089.9:c.462G>C	p.Glu154Asp	p.E154D	ENST00000218089	NM_001042749.1	154	gaG/gaC																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098816	178098816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	269	772	1	ENST00000397062.3:c.229G>C	p.Asp77His	p.D77H	ENST00000397062	NM_006164.4	77	Gat/Cat																																																																														
NUP93	0	MSKCC	GRCh37	16	56782202	56782202	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	148	488	0	ENST00000308159.5:c.43C>G	p.Gln15Glu	p.Q15E	ENST00000308159	NM_014669.4	15	Cag/Gag																																																																														
FGF4	0	MSKCC	GRCh37	11	69588819	69588819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	329	1027	0	ENST00000168712.1:c.417G>C	p.Met139Ile	p.M139I	ENST00000168712	NM_002007.2	139	atG/atC																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482550	56482550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	246	616	1	ENST00000267101.3:c.1007C>T	p.Ser336Phe	p.S336F	ENST00000267101	NM_001982.3	336	tCt/tTt																																																																														
BLM	0	MSKCC	GRCh37	15	91341433	91341433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	197	501	0	ENST00000355112.3:c.3224G>C	p.Arg1075Thr	p.R1075T	ENST00000355112	NM_000057.2	1075	aGa/aCa																																																																														
SOS1	0	MSKCC	GRCh37	2	39249962	39249962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	229	788	0	ENST00000402219.2:c.1607A>G	p.Asn536Ser	p.N536S	ENST00000402219	NM_005633.3	536	aAt/aGt																																																																														
TERT	0	MSKCC	GRCh37	5	1280389	1280389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	254	765	0	ENST00000310581.5:c.1834G>A	p.Ala612Thr	p.A612T	ENST00000310581	NM_198253.2	612	Gcc/Acc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8376036	8376036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	146	429	0	ENST00000356435.5:c.4561G>A	p.Asp1521Asn	p.D1521N	ENST00000356435		1521	Gat/Aat																																																																														
DDR2	0	MSKCC	GRCh37	1	162722894	162722894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	245	583	1	ENST00000367921.3:c.92G>T	p.Arg31Leu	p.R31L	ENST00000367921	NM_006182.2	31	cGc/cTc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46740279	46740279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150315374		P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	154	558	1	ENST00000371975.4:c.1759C>T	p.Arg587Trp	p.R587W	ENST00000371975	NM_003579.3	587	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	317	798	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	259	693	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670219	134670219	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	60	656	2	ENST00000398015.3:c.130G>T	p.Glu44Ter	p.E44*	ENST00000398015	NM_004441.4	44	Gaa/Taa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120460341	120460341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	312	794	0	ENST00000256646.2:c.5974G>C	p.Ala1992Pro	p.A1992P	ENST00000256646	NM_024408.3	1992	Gca/Cca																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120471649	120471649	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	170	472	0	ENST00000256646.2:c.3842G>C	p.Cys1281Ser	p.C1281S	ENST00000256646	NM_024408.3	1281	tGt/tCt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120512341	120512341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	118	511	1	ENST00000256646.2:c.901G>A	p.Glu301Lys	p.E301K	ENST00000256646	NM_024408.3	301	Gaa/Aaa																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741537	17741537	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	257	526	0	ENST00000250003.3:c.208C>G	p.His70Asp	p.H70D	ENST00000250003	NM_002478.4	70	Cac/Gac																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741742	17741742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	84	734	0	ENST00000250003.3:c.413G>C	p.Ser138Thr	p.S138T	ENST00000250003	NM_002478.4	138	aGc/aCc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17742477	17742477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	30	678	0	ENST00000250003.3:c.659C>G	p.Ala220Gly	p.A220G	ENST00000250003	NM_002478.4	220	gCc/gGc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138852	64138852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	93	799	0	ENST00000334205.4:c.2219C>T	p.Ala740Val	p.A740V	ENST00000334205	NM_003942.2	740	gCc/gTc																																																																														
FGF3	0	MSKCC	GRCh37	11	69625132	69625132	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	50	741	2	ENST00000334134.2:c.661G>T	p.Glu221Ter	p.E221*	ENST00000334134	NM_005247.2	221	Gag/Tag																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180568	94180568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	49	593	1	ENST00000323929.3:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000323929	NM_005591.3	534	Gag/Aag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489538	56489538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	288	535	0	ENST00000267101.3:c.2003G>T	p.Gly668Val	p.G668V	ENST00000267101	NM_001982.3	668	gGg/gTg																																																																														
PTPN11	0	MSKCC	GRCh37	12	112910793	112910793	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	341	735	3	ENST00000351677.2:c.802G>T	p.Gly268Cys	p.G268C	ENST00000351677	NM_002834.3	268	Ggt/Tgt																																																																														
LATS2	0	MSKCC	GRCh37	13	21563091	21563091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	321	868	3	ENST00000382592.4:c.828G>T	p.Gln276His	p.Q276H	ENST00000382592	NM_014572.2	276	caG/caT																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986631	36986731	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCTGGCTGGTGGCCCGGGTGTGCGCCAAGGCCGGCGCCACCGCTGCCCACGGAGATGGCCGCTGCCGCCGCCTGCGCGGCCTGCGCCTGGTGCTGCGC	CTGCCTGGCTGGTGGCCCGGGTGTGCGCCAAGGCCGGCGCCACCGCTGCCCACGGAGATGGCCGCTGCCGCCGCCTGCGCGGCCTGCGCCTGGTGCTGCGC	-			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2756	1122	213	0	ENST00000354822.5:c.958_1058del	p.Ala320ArgfsTer85	p.A320Rfs*85	ENST00000354822	NM_001079668.2	320	GCGCAGCACCAGGCGCAGGCCGCGCAGGCGGCGGCAGCGGCCATCTCCGTGGGCAGCGGTGGCGCCGGCCTTGGCGCACACCCGGGCCACCAGCCAGGCAGc/c																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992733	72992733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	257	695	2	ENST00000268489.5:c.1312G>T	p.Ala438Ser	p.A438S	ENST00000268489	NM_006885.3	438	Gcg/Tcg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41246290	41246290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	105	770	0	ENST00000357654.3:c.1258G>C	p.Asp420His	p.D420H	ENST00000357654	NM_007294.3	420	Gat/Cat																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805568	46805568	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	185	892	0	ENST00000290295.7:c.388T>G	p.Tyr130Asp	p.Y130D	ENST00000290295	NM_006361.5	130	Tat/Gat																																																																														
SOX9	0	MSKCC	GRCh37	17	70117864	70117864	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	41	448	0	ENST00000245479.2:c.332C>G	p.Ala111Gly	p.A111G	ENST00000245479	NM_000346.3	111	gCc/gGc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600429	10600429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	346	1033	2	ENST00000171111.5:c.1426G>T	p.Gly476Trp	p.G476W	ENST00000171111	NM_203500.1	476	Ggg/Tgg																																																																														
UPF1	0	MSKCC	GRCh37	19	18966881	18966881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	227	913	0	ENST00000262803.5:c.1692G>C	p.Gln564His	p.Q564H	ENST00000262803	NM_002911.3	564	caG/caC																																																																														
ERF	0	MSKCC	GRCh37	19	42753170	42753170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	178	624	1	ENST00000222329.4:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000222329	NM_006494.2	365	tCg/tTg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467177	25467177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	530	591	0	ENST00000264709.3:c.1698G>C	p.Leu566Phe	p.L566F	ENST00000264709	NM_175629.2	566	ttG/ttC																																																																														
IDH1	0	MSKCC	GRCh37	2	209108244	209108244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	219	694	0	ENST00000345146.2:c.605C>G	p.Ser202Cys	p.S202C	ENST00000345146	NM_005896.2	202	tCt/tGt																																																																														
GATA2	0	MSKCC	GRCh37	3	128205786	128205786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	275	700	0	ENST00000341105.2:c.89C>A	p.Ala30Glu	p.A30E	ENST00000341105	NM_032638.4	30	gCg/gAg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55155059	55155059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	51	441	1	ENST00000257290.5:c.2768G>A	p.Ser923Asn	p.S923N	ENST00000257290	NM_006206.4	923	aGt/aAt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280028	66280028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	34	323	0	ENST00000273854.3:c.1661G>T	p.Arg554Ile	p.R554I	ENST00000273854	NM_004439.5	554	aGa/aTa																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138201315	138201315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	186	580	0	ENST00000237289.4:c.2014G>C	p.Gly672Arg	p.G672R	ENST00000237289	NM_001270507.1	672	Gga/Cga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157505469	157505469	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	275	522	1	ENST00000346085.5:c.3450T>A	p.Phe1150Leu	p.F1150L	ENST00000346085	NM_020732.3	1150	ttT/ttA																																																																														
PREX2	0	MSKCC	GRCh37	8	69136798	69136798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	401	609	0	ENST00000288368.4:c.4712C>T	p.Ala1571Val	p.A1571V	ENST00000288368	NM_024870.2	1571	gCa/gTa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8317888	8317888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	122	647	1	ENST00000356435.5:c.5725C>A	p.His1909Asn	p.H1909N	ENST00000356435		1909	Cac/Aac																																																																														
MED12	0	MSKCC	GRCh37	X	70356384	70356384	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	296	837	0	ENST00000374080.3:c.5279A>T	p.Glu1760Val	p.E1760V	ENST00000374080		1760	gAg/gTg																																																																														
GATA2	0	MSKCC	GRCh37	3	128205861	128205861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	108	301	0	ENST00000341105.2:c.14C>A	p.Pro5His	p.P5H	ENST00000341105	NM_032638.4	5	cCc/cAc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610463	10610463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	241	729	0	ENST00000171111.5:c.247G>T	p.Val83Phe	p.V83F	ENST00000171111	NM_203500.1	83	Gtc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	346	563	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
KMT2A	0	MSKCC	GRCh37	11	118375476	118375476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	42	466	0	ENST00000534358.1:c.8869G>C	p.Asp2957His	p.D2957H	ENST00000534358	NM_005933.3	2957	Gac/Cac																																																																														
FLT3	0	MSKCC	GRCh37	13	28597537	28597537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	139	1078	0	ENST00000241453.7:c.2368T>C	p.Cys790Arg	p.C790R	ENST00000241453	NM_004119.2	790	Tgc/Cgc																																																																														
STAT3	0	MSKCC	GRCh37	17	40475028	40475028	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	31	736	0	ENST00000264657.5:c.1882A>T	p.Ile628Phe	p.I628F	ENST00000264657	NM_139276.2	628	Atc/Ttc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793298	242793298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	420	1104	0	ENST00000334409.5:c.779C>T	p.Ser260Leu	p.S260L	ENST00000334409	NM_005018.2	260	tCa/tTa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546695	9546695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	52	331	0	ENST00000353224.5:c.1327G>A	p.Gly443Arg	p.G443R	ENST00000353224	NM_177990.2	443	Gga/Aga																																																																														
SRC	0	MSKCC	GRCh37	20	36031768	36031768	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	223	808	0	ENST00000358208.4:c.1600del	p.Glu534ArgfsTer110	p.E534Rfs*110	ENST00000358208		533	Ggg/gg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980927	40980927	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	21	464	0	ENST00000373198.4:c.1561-2A>T		p.X521_splice	ENST00000373198	NM_133170.3	521																																																																															
PHOX2B	0	MSKCC	GRCh37	4	41749551	41749551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	106	611	1	ENST00000226382.2:c.244C>A	p.Pro82Thr	p.P82T	ENST00000226382	NM_003924.3	82	Cct/Act																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056648	26056648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	84	232	0	ENST00000343677.2:c.9G>T	p.Glu3Asp	p.E3D	ENST00000343677	NM_005319.3	3	gaG/gaT																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197388	26197388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	127	339	0	ENST00000356476.2:c.91C>G	p.Pro31Ala	p.P31A	ENST00000356476		31	Cca/Gca																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509826	106509826	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	40	847	0	ENST00000359195.3:c.1820C>G	p.Thr607Arg	p.T607R	ENST00000359195	NM_002649.2	607	aCa/aGa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139409809	139409809	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	500	1051	0	ENST00000277541.6:c.1947del	p.Cys650AlafsTer122	p.C650Afs*122	ENST00000277541	NM_017617.3	649	ccC/cc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412125	63412125	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	149	1271	0	ENST00000330258.3:c.1042G>T	p.Gly348Cys	p.G348C	ENST00000330258	NM_152424.3	348	Ggc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0019268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	109	817	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195643	102195643	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200590873		P-0019268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	107	765	1	ENST00000263464.3:c.403C>T	p.Arg135Cys	p.R135C	ENST00000263464	NM_001165.4	135	Cgt/Tgt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32945095	32945095	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0019268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	27	470	0	ENST00000380152.3:c.8490G>A	p.Trp2830Ter	p.W2830*	ENST00000380152		2830	tgG/tgA																																																																														
XPO1	0	MSKCC	GRCh37	2	61717804	61717804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	49	869	0	ENST00000401558.2:c.1995G>T	p.Trp665Cys	p.W665C	ENST00000401558	NM_003400.3	665	tgG/tgT																																																																														
EPHA7	0	MSKCC	GRCh37	6	93964397	93964397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	46	877	1	ENST00000369303.4:c.2500G>A	p.Glu834Lys	p.E834K	ENST00000369303	NM_004440.3	834	Gaa/Aaa																																																																														
STK11	0	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	81	736	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	29	931	2	ENST00000269305.4:c.472C>A	p.Arg158Ser	p.R158S	ENST00000269305	NM_001126112.2	158	Cgc/Agc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274284	10274284	+	splice_region_variant,5_prime_UTR_variant	Splice_Region	SNP	T	T	G			P-0019271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	24	317	0	ENST00000330684.3:c.-16A>C		p.X6_splice	ENST00000330684	NM_001134407.1	6																																																																															
TP53	0	MSKCC	GRCh37	17	7578461	7578462	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCGGGT			P-0019271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	186	947	0	ENST00000269305.4:c.463_468dup	p.Thr155_Arg156dup	p.T155_R156dup	ENST00000269305	NM_001126112.2	155	-/ACCCGC																																																																														
PNRC1	0	MSKCC	GRCh37	6	89793883	89793883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	92	649	0	ENST00000336032.3:c.952C>A	p.His318Asn	p.H318N	ENST00000336032	NM_006813.2	318	Cac/Aac																																																																														
FGFR1	0	MSKCC	GRCh37	8	38271496	38271496	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	86	883	0	ENST00000425967.3:c.2325A>C	p.Arg775Ser	p.R775S	ENST00000425967	NM_001174067.1	775	agA/agC																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737371	145737371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	207	900	0	ENST00000428558.2:c.3316C>T	p.Arg1106Cys	p.R1106C	ENST00000428558	NM_004260.3	1106	Cgc/Tgc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8471039	8471039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	52	779	0	ENST00000356435.5:c.3460T>C	p.Phe1154Leu	p.F1154L	ENST00000356435		1154	Ttt/Ctt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	329	733	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	328	660	0	ENST00000344626.4:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000344626	NM_003072.3	882	Gaa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486121	8486121	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	91	560	0	ENST00000356435.5:c.2696A>C	p.Asn899Thr	p.N899T	ENST00000356435		899	aAc/aCc																																																																														
NF1	0	MSKCC	GRCh37	17	29559882	29559882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	70	291	0	ENST00000358273.4:c.3479G>C	p.Gly1160Ala	p.G1160A	ENST00000358273	NM_001042492.2	1160	gGt/gCt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59861775	59861775	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	108	456	0	ENST00000259008.2:c.1484C>A	p.Ser495Tyr	p.S495Y	ENST00000259008	NM_032043.2	495	tCt/tAt																																																																														
RTEL1	0	MSKCC	GRCh37	20	62323159	62323159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	99	472	0	ENST00000508582.2:c.2693G>T	p.Gly898Val	p.G898V	ENST00000508582		898	gGg/gTg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62326695	62326695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140411308		P-0019272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	1055	817	0	ENST00000508582.2:c.3586G>A	p.Glu1196Lys	p.E1196K	ENST00000508582		1196	Gag/Aag																																																																														
AR	0	MSKCC	GRCh37	X	66943593	66943593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	279	601	0	ENST00000374690.3:c.2673C>A	p.Asp891Glu	p.D891E	ENST00000374690	NM_000044.3	891	gaC/gaA																																																																														
STAG2	0	MSKCC	GRCh37	X	123202456	123202457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	167	768	0	ENST00000218089.9:c.2309dup	p.Ile771AspfsTer14	p.I771Dfs*14	ENST00000218089	NM_001042749.1	770	cag/cAag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061232	38061234	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0019273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	246	765	0	ENST00000250448.2:c.755_757del	p.Asn252del	p.N252del	ENST00000250448	NM_004496.3	252	aACAtg/atg																																																																														
MEN1	0	MSKCC	GRCh37	11	64577136	64577136	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	225	747	0	ENST00000337652.1:c.446del	p.Gly149ValfsTer5	p.G149Vfs*5	ENST00000337652	NM_130803.2	149	gGt/gt																																																																														
TSC2	0	MSKCC	GRCh37	16	2111865	2111871	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	ACTGCAG	ACTGCAG	-			P-0019275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	162	420	0	ENST00000219476.3:c.1120-5_1121del		p.X374_splice	ENST00000219476	NM_000548.3	374																																																																															
DAXX	0	MSKCC	GRCh37	6	33286993	33286994	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TAGC			P-0019275-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	177	525	0	ENST00000374542.5:c.1941-1_1943dup	p.Tyr648Ter	p.Y648*	ENST00000374542	NM_001141970.1	648	tat/taGCTAt																																																																														
JAK3	0	MSKCC	GRCh37	19	17949096	17949096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	35	721	1	ENST00000458235.1:c.1545G>T	p.Lys515Asn	p.K515N	ENST00000458235	NM_000215.3	515	aaG/aaT																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25457179	25457179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	46	592	0	ENST00000264709.3:c.2708C>G	p.Ala903Gly	p.A903G	ENST00000264709	NM_175629.2	903	gCt/gGt																																																																														
INHBA	0	MSKCC	GRCh37	7	41729767	41729767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	44	321	0	ENST00000242208.4:c.762G>T	p.Leu254Phe	p.L254F	ENST00000242208	NM_002192.2	254	ttG/ttT																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	176	608	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	180	738	0	ENST00000286548.4:c.626A>G	p.Gln209Arg	p.Q209R	ENST00000286548	NM_002072.3	209	cAa/cGa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	57	237	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	299	697	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																														
MEN1	0	MSKCC	GRCh37	11	64577222	64577224	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	263	655	1	ENST00000337652.1:c.358_360del	p.Lys120del	p.K120del	ENST00000337652	NM_130803.2	120	AAG/-																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740898	58740901	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	136	545	0	ENST00000305921.3:c.1806_1809del	p.Cys603PhefsTer21	p.C603Ffs*21	ENST00000305921	NM_003620.3	601	acTGTT/ac																																																																														
BCOR	0	MSKCC	GRCh37	X	39923680	39923681	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	217	541	0	ENST00000378444.4:c.3410_3411del	p.Lys1137SerfsTer4	p.K1137Sfs*4	ENST00000378444	NM_001123385.1	1137	aAA/a																																																																														
TSC2	0	MSKCC	GRCh37	16	2104325	2104327	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	255	544	0	ENST00000219476.3:c.369_371del	p.Phe124del	p.F124del	ENST00000219476	NM_000548.3	122	cTCTtc/ctc																																																																														
RAF1	0	MSKCC	GRCh37	3	12633289	12633291	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTC	CTC	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	201	510	0	ENST00000251849.4:c.1109_1111del	p.Gly370del	p.G370del	ENST00000251849	NM_002880.3	370	gGAGat/gat																																																																														
DAXX	0	MSKCC	GRCh37	6	33286872	33286873	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0019281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	245	575	0	ENST00000374542.5:c.2064_2065del	p.Pro689GlnfsTer51	p.P689Qfs*51	ENST00000374542	NM_001141970.1	688	tcTCcc/tccc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	47	601	0				ENST00000310581	NM_198253.2																																																																																
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	87	633	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0019285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	155	716	1	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
RECQL	0	MSKCC	GRCh37	12	21643178	21643178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	169	845	0	ENST00000421138.2:c.349G>A	p.Gly117Ser	p.G117S	ENST00000421138		117	Ggt/Agt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56474118	56474118	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	161	817	0	ENST00000267101.3:c.34T>A	p.Leu12Met	p.L12M	ENST00000267101	NM_001982.3	12	Ttg/Atg																																																																														
MGA	0	MSKCC	GRCh37	15	42028511	42028511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	97	642	0	ENST00000219905.7:c.4049A>C	p.Lys1350Thr	p.K1350T	ENST00000219905	NM_001164273.1	1350	aAg/aCg																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39629549	39629549	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	94	581	0	ENST00000262039.4:c.2243A>G	p.Asn748Ser	p.N748S	ENST00000262039	NM_002647.2	748	aAc/aGc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156496	55156496	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs200042995		P-0019285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	25	548	0	ENST00000257290.5:c.2897A>G	p.His966Arg	p.H966R	ENST00000257290	NM_006206.4	966	cAc/cGc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845678	151845678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	44	644	0	ENST00000262189.6:c.13334G>C	p.Gly4445Ala	p.G4445A	ENST00000262189	NM_170606.2	4445	gGt/gCt																																																																														
TSC1	0	MSKCC	GRCh37	9	135797330	135797330	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	99	395	0	ENST00000298552.3:c.539T>C	p.Leu180Pro	p.L180P	ENST00000298552	NM_001162426.1	180	cTc/cCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	78	469	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
CDH1	0	MSKCC	GRCh37	16	68771319	68771319	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	40	216	0	ENST00000261769.5:c.1A>G	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	Atg/Gtg																																																																														
FGF19	0	MSKCC	GRCh37	11	69514203	69514203	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	73	822	0	ENST00000294312.3:c.478C>G	p.Leu160Val	p.L160V	ENST00000294312	NM_005117.2	160	Ctt/Gtt																																																																														
FGF19	0	MSKCC	GRCh37	11	69514274	69514274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	80	810	0	ENST00000294312.3:c.407C>T	p.Ser136Phe	p.S136F	ENST00000294312	NM_005117.2	136	tCc/tTc																																																																														
CBFB	0	MSKCC	GRCh37	16	67132595	67132621	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGATTTTGTCATTGCAGGCAAGAAGA	ATGATTTTGTCATTGCAGGCAAGAAGA	-			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	91	571	0	ENST00000412916.2:c.496-18_504del		p.X166_splice	ENST00000412916		166																																																																															
CTCF	0	MSKCC	GRCh37	16	67645892	67645894	+	inframe_deletion	In_Frame_Del	DEL	ACG	ACG	-			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	176	711	0	ENST00000264010.4:c.820_822del	p.Thr274del	p.T274del	ENST00000264010	NM_006565.3	274	ACG/-																																																																														
STAT5B	0	MSKCC	GRCh37	17	40359617	40359617	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	56	771	0	ENST00000293328.3:c.2036A>G	p.Tyr679Cys	p.Y679C	ENST00000293328	NM_012448.3	679	tAc/tGc																																																																														
EZH2	0	MSKCC	GRCh37	7	148529838	148529838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	28	525	2	ENST00000320356.2:c.251C>T	p.Ser84Leu	p.S84L	ENST00000320356	NM_004456.4	84	tCg/tTg																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	150	708	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0019300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	8	388	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	51	426	1				ENST00000310581	NM_198253.2																																																																																
CDK12	0	MSKCC	GRCh37	17	37665992	37665992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	41	648	5	ENST00000447079.4:c.2644C>T	p.Arg882Trp	p.R882W	ENST00000447079	NM_015083.1	882	Cgg/Tgg																																																																														
NSD1	0	MSKCC	GRCh37	5	176665247	176665247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	22	445	1	ENST00000439151.2:c.3931C>T	p.Arg1311Cys	p.R1311C	ENST00000439151	NM_022455.4	1311	Cgc/Tgc																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675107	40675107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	110	1133	1	ENST00000249776.8:c.71C>T	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCc/tTc																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987076	36987076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	36	986	0	ENST00000354822.5:c.613G>A	p.Glu205Lys	p.E205K	ENST00000354822	NM_001079668.2	205	Gag/Aag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779057	3779058	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	49	733	2	ENST00000262367.5:c.5990_5991delinsTT	p.Pro1997Leu	p.P1997L	ENST00000262367	NM_004380.2	1997	cCC/cTT																																																																														
NCOA3	0	MSKCC	GRCh37	20	46265285	46265285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	28	545	1	ENST00000371998.3:c.2155G>A	p.Gly719Arg	p.G719R	ENST00000371998		719	Gga/Aga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974744	21974744	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	19	327	0	ENST00000304494.5:c.83T>G	p.Val28Gly	p.V28G	ENST00000304494	NM_000077.4	28	gTg/gGg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974744	21974744	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	19	327	0	ENST00000304494.5:c.83T>G	p.Val28Gly	p.V28G	ENST00000304494	NM_000077.4	28	gTg/gGg																																																																														
RXRA	0	MSKCC	GRCh37	9	137328332	137328332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	52	817	4	ENST00000481739.1:c.1261C>T	p.Arg421Cys	p.R421C	ENST00000481739	NM_002957.4	421	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	175	850	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0019304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	113	674	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074242	8074246	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGG	AAGGG	-			P-0019304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	142	742	0	ENST00000377482.5:c.413_417del	p.Ser138PhefsTer8	p.S138Ffs*8	ENST00000377482	NM_018948.3	138	tCCCTT/t																																																																														
PLCG2	0	MSKCC	GRCh37	16	81929479	81929479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	119	676	0	ENST00000359376.3:c.1140C>G	p.Ile380Met	p.I380M	ENST00000359376	NM_002661.3	380	atC/atG																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952019	178952019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	84	572	0	ENST00000263967.3:c.3074C>A	p.Thr1025Asn	p.T1025N	ENST00000263967	NM_006218.2	1025	aCc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	272	731	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	170	812	1	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
PDPK1	0	MSKCC	GRCh37	16	2588121	2588121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	16	38	0	ENST00000342085.4:c.8G>A	p.Arg3Lys	p.R3K	ENST00000342085	NM_002613.4	3	aGg/aAg																																																																														
ESR1	0	MSKCC	GRCh37	6	152163770	152163770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	59	619	0	ENST00000206249.3:c.491G>C	p.Arg164Thr	p.R164T	ENST00000206249	NM_000125.3	164	aGa/aCa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0019316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	159	674	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	365	823	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	34	134	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	34	134	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																																																														
SOS1	0	MSKCC	GRCh37	2	39250272	39250272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	223	1112	3	ENST00000402219.2:c.1297G>A	p.Glu433Lys	p.E433K	ENST00000402219	NM_005633.3	433	Gag/Aag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433004	49433005	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AG			P-0019316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	362	689	1	ENST00000301067.7:c.8366_8366+1delinsCT		p.X2789_splice	ENST00000301067	NM_003482.3	2789																																																																															
PRKD1	0	MSKCC	GRCh37	14	30135360	30135360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	223	749	0	ENST00000331968.5:c.458C>T	p.Ser153Leu	p.S153L	ENST00000331968	NM_002742.2	153	tCa/tTa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88690618	88690619	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0019316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	125	562	2	ENST00000360948.2:c.411_412delinsAA	p.Asn137Lys	p.N137K	ENST00000360948	NM_001012338.2	137	aaCCgg/aaAAgg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873019	134873019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	49	740	0	ENST00000398015.3:c.1323C>A	p.His441Gln	p.H441Q	ENST00000398015	NM_004441.4	441	caC/caA																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163600	32163600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	102	627	0	ENST00000375023.3:c.5626T>C	p.Cys1876Arg	p.C1876R	ENST00000375023	NM_004557.3	1876	Tgt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	192	666	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
AKT3	0	MSKCC	GRCh37	1	243859016	243859016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	13	359	0	ENST00000263826.5:c.49G>A	p.Glu17Lys	p.E17K	ENST00000263826	NM_005465.4	17	Gaa/Aaa																																																																														
VTCN1	0	MSKCC	GRCh37	1	117753456	117753456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	69	689	0	ENST00000369458.3:c.22C>T	p.Leu8Phe	p.L8F	ENST00000369458	NM_024626.3	8	Ctc/Ttc																																																																														
NEGR1	0	MSKCC	GRCh37	1	72748117	72748117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	85	587	0	ENST00000357731.5:c.61C>T	p.Leu21Phe	p.L21F	ENST00000357731	NM_173808.2	21	Ctc/Ttc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176055007	176055007	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	72	660	1	ENST00000367669.3:c.1046A>T	p.Tyr349Phe	p.Y349F	ENST00000367669	NM_022457.5	349	tAt/tTt																																																																														
TET1	0	MSKCC	GRCh37	10	70333608	70333608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	32	496	0	ENST00000373644.4:c.1513A>G	p.Ile505Val	p.I505V	ENST00000373644	NM_030625.2	505	Ata/Gta																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435415	18435415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	22	407	0	ENST00000266497.5:c.400C>A	p.His134Asn	p.H134N	ENST00000266497		134	Cat/Aat																																																																														
TSHR	0	MSKCC	GRCh37	14	81422091	81422091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	75	641	0	ENST00000298171.2:c.67G>A	p.Gly23Arg	p.G23R	ENST00000298171	NM_000369.2	23	Ggg/Agg																																																																														
IDH1	0	MSKCC	GRCh37	2	209110120	209110120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	57	586	0	ENST00000345146.2:c.443G>T	p.Gly148Val	p.G148V	ENST00000345146	NM_005896.2	148	gGg/gTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212570089	212570089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	91	568	0	ENST00000342788.4:c.1152A>G	p.Ile384Met	p.I384M	ENST00000342788	NM_005235.2	384	atA/atG																																																																														
BCL6	0	MSKCC	GRCh37	3	187442845	187442845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	59	555	1	ENST00000232014.4:c.1861G>T	p.Val621Leu	p.V621L	ENST00000232014	NM_001130845.1	621	Gtg/Ttg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55146500	55146500	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	22	325	0	ENST00000257290.5:c.2174T>C	p.Phe725Ser	p.F725S	ENST00000257290	NM_006206.4	725	tTt/tCt																																																																														
DAXX	0	MSKCC	GRCh37	6	33289079	33289079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	145	774	0	ENST00000374542.5:c.473A>G	p.Asn158Ser	p.N158S	ENST00000374542	NM_001141970.1	158	aAt/aGt																																																																														
LATS1	0	MSKCC	GRCh37	6	149997807	149997807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	45	741	2	ENST00000253339.5:c.2660G>A	p.Cys887Tyr	p.C887Y	ENST00000253339		887	tGt/tAt																																																																														
KLF4	0	MSKCC	GRCh37	9	110249797	110249797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	182	868	0	ENST00000374672.4:c.878C>T	p.Pro293Leu	p.P293L	ENST00000374672	NM_004235.4	293	cCt/cTt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44732884	44732884	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	176	711	1	ENST00000377967.4:c.87A>T	p.Lys29Asn	p.K29N	ENST00000377967	NM_021140.2	29	aaA/aaT																																																																														
ATRX	0	MSKCC	GRCh37	X	76829782	76829782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	49	735	0	ENST00000373344.5:c.6259G>A	p.Asp2087Asn	p.D2087N	ENST00000373344	NM_000489.3	2087	Gat/Aat																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858135	152858135	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	565	1118	0	ENST00000406277.2:c.480G>C	p.Gln160His	p.Q160H	ENST00000406277	NM_152274.4	160	caG/caC																																																																														
RB1	0	MSKCC	GRCh37	13	48878111	48878111	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TT			P-0019317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	238	126	0	ENST00000267163.4:c.63delinsTT	p.Ala22CysfsTer9	p.A22Cfs*9	ENST00000267163	NM_000321.2	21	ccG/ccTT																																																																														
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	120	937	1	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
GATA3	0	MSKCC	GRCh37	10	8100285	8100285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	50	811	0	ENST00000346208.3:c.259C>A	p.Pro87Thr	p.P87T	ENST00000346208		87	Ccg/Acg																																																																														
CDK12	0	MSKCC	GRCh37	17	37682455	37682455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	76	639	0	ENST00000447079.4:c.3646C>T	p.Gln1216Ter	p.Q1216*	ENST00000447079	NM_015083.1	1216	Cag/Tag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213869	66213869	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	46	712	0	ENST00000273854.3:c.2561A>G	p.Lys854Arg	p.K854R	ENST00000273854	NM_004439.5	854	aAg/aGg																																																																														
IL10	0	MSKCC	GRCh37	1	206944326	206944326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	52	764	0	ENST00000423557.1:c.304G>A	p.Asp102Asn	p.D102N	ENST00000423557	NM_000572.2	102	Gac/Aac																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163848	32163848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	41	672	0	ENST00000375023.3:c.5378G>A	p.Arg1793Gln	p.R1793Q	ENST00000375023	NM_004557.3	1793	cGa/cAa																																																																														
PREX2	0	MSKCC	GRCh37	8	68950455	68950455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	45	764	0	ENST00000288368.4:c.767C>T	p.Ser256Phe	p.S256F	ENST00000288368	NM_024870.2	256	tCt/tTt																																																																														
SDHB	0	MSKCC	GRCh37	1	17350530	17350530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	58	766	0	ENST00000375499.3:c.580A>T	p.Thr194Ser	p.T194S	ENST00000375499	NM_003000.2	194	Acc/Tcc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120478123	120478123	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	66	725	0	ENST00000256646.2:c.3627C>G	p.Phe1209Leu	p.F1209L	ENST00000256646	NM_024408.3	1209	ttC/ttG																																																																														
RET	0	MSKCC	GRCh37	10	43596035	43596035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	31	856	0	ENST00000355710.3:c.202C>A	p.Leu68Met	p.L68M	ENST00000355710	NM_020975.4	68	Ctg/Atg																																																																														
WT1	0	MSKCC	GRCh37	11	32414250	32414250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	44	699	0	ENST00000332351.3:c.1301G>T	p.Arg434Leu	p.R434L	ENST00000332351	NM_024426.4	434	cGt/cTt																																																																														
WT1	0	MSKCC	GRCh37	11	32421493	32421493	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	55	491	0	ENST00000332351.3:c.1098+1G>T		p.X366_splice	ENST00000332351	NM_024426.4	366																																																																															
CHEK1	0	MSKCC	GRCh37	11	125499192	125499192	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	89	727	0	ENST00000428830.2:c.354+1G>T		p.X118_splice	ENST00000428830	NM_001114121.2	118																																																																															
KMT2D	0	MSKCC	GRCh37	12	49448529	49448529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	33	598	0	ENST00000301067.7:c.182del	p.Gly61ValfsTer69	p.G61Vfs*69	ENST00000301067	NM_003482.3	61	gGt/gt																																																																														
POLE	0	MSKCC	GRCh37	12	133249841	133249841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	33	767	0	ENST00000320574.5:c.1382C>T	p.Ser461Leu	p.S461L	ENST00000320574	NM_006231.2	461	tCa/tTa																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675145	40675145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	85	954	0	ENST00000249776.8:c.109G>C	p.Glu37Gln	p.E37Q	ENST00000249776	NM_033286.3	37	Gaa/Caa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88423636	88423637	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	20	571	2	ENST00000360948.2:c.2198_2199delinsAA	p.Pro733Gln	p.P733Q	ENST00000360948	NM_001012338.2	733	cCC/cAA																																																																														
SLX4	0	MSKCC	GRCh37	16	3640124	3640124	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	68	1208	0	ENST00000294008.3:c.3515C>G	p.Ser1172Cys	p.S1172C	ENST00000294008	NM_032444.2	1172	tCt/tGt																																																																														
SOCS1	0	MSKCC	GRCh37	16	11349314	11349314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	130	870	2	ENST00000332029.2:c.22G>A	p.Ala8Thr	p.A8T	ENST00000332029	NM_003745.1	8	Gca/Aca																																																																														
CDK12	0	MSKCC	GRCh37	17	37627398	37627398	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	98	1082	0	ENST00000447079.4:c.1313A>T	p.Lys438Met	p.K438M	ENST00000447079	NM_015083.1	438	aAg/aTg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41247864	41247864	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	74	716	0	ENST00000357654.3:c.669G>T	p.Lys223Asn	p.K223N	ENST00000357654	NM_007294.3	223	aaG/aaT																																																																														
AXIN2	0	MSKCC	GRCh37	17	63531788	63531788	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	90	832	0	ENST00000307078.5:c.2193G>C	p.Gln731His	p.Q731H	ENST00000307078	NM_004655.3	731	caG/caC																																																																														
KEAP1	0	MSKCC	GRCh37	19	10597486	10597486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	130	878	1	ENST00000171111.5:c.1717G>T	p.Asp573Tyr	p.D573Y	ENST00000171111	NM_203500.1	573	Gat/Tat																																																																														
JAK3	0	MSKCC	GRCh37	19	17953357	17953357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	28	975	0	ENST00000458235.1:c.629G>T	p.Arg210Leu	p.R210L	ENST00000458235	NM_000215.3	210	cGg/cTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36227674	36227674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	37	935	0	ENST00000222270.7:c.7243C>T	p.Arg2415Cys	p.R2415C	ENST00000222270	NM_014727.1	2415	Cgc/Tgc																																																																														
POLD1	0	MSKCC	GRCh37	19	50920466	50920466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	83	717	0	ENST00000440232.2:c.3158G>T	p.Arg1053Leu	p.R1053L	ENST00000440232	NM_002691.3	1053	cGc/cTc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25497809	25497809	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	69	658	0	ENST00000264709.3:c.639+1G>T		p.X213_splice	ENST00000264709	NM_175629.2	213																																																																															
SF3B1	0	MSKCC	GRCh37	2	198288640	198288640	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	51	953	1	ENST00000335508.6:c.87A>T	p.Gln29His	p.Q29H	ENST00000335508	NM_012433.2	29	caA/caT																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42845304	42845304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	75	973	1	ENST00000398585.3:c.958G>T	p.Gly320Cys	p.G320C	ENST00000398585	NM_001135099.1	320	Ggc/Tgc																																																																														
NF2	0	MSKCC	GRCh37	22	30077545	30077545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	56	903	2	ENST00000338641.4:c.1692G>T	p.Glu564Asp	p.E564D	ENST00000338641	NM_000268.3	564	gaG/gaT																																																																														
MITF	0	MSKCC	GRCh37	3	69988247	69988247	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	53	571	0	ENST00000352241.4:c.583-2A>T		p.X195_splice	ENST00000352241	NM_198159.2	195																																																																															
EPHA3	0	MSKCC	GRCh37	3	89391011	89391011	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	67	862	1	ENST00000336596.2:c.1077C>G	p.Phe359Leu	p.F359L	ENST00000336596	NM_005233.5	359	ttC/ttG																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185146752	185146752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	122	1023	2	ENST00000265026.3:c.383G>T	p.Gly128Val	p.G128V	ENST00000265026	NM_004721.4	128	gGt/gTt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66286182	66286182	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	14	561	0	ENST00000273854.3:c.1504T>A	p.Tyr502Asn	p.Y502N	ENST00000273854	NM_004439.5	502	Tat/Aat																																																																														
FAT1	0	MSKCC	GRCh37	4	187554927	187554927	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	56	612	0	ENST00000441802.2:c.4234A>T	p.Ile1412Phe	p.I1412F	ENST00000441802	NM_005245.3	1412	Att/Ttt																																																																														
IL7R	0	MSKCC	GRCh37	5	35873616	35873616	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	23	425	0	ENST00000303115.3:c.572T>G	p.Leu191Arg	p.L191R	ENST00000303115	NM_002185.3	191	cTg/cGg																																																																														
MSH3	0	MSKCC	GRCh37	5	80071558	80071558	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	39	662	0	ENST00000265081.6:c.2299G>C	p.Asp767His	p.D767H	ENST00000265081	NM_002439.4	767	Gat/Cat																																																																														
APC	0	MSKCC	GRCh37	5	112174134	112174134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	68	643	0	ENST00000257430.4:c.2843C>G	p.Ser948Cys	p.S948C	ENST00000257430	NM_000038.5	948	tCt/tGt																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120708	94120708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	45	573	0	ENST00000369303.4:c.343G>T	p.Val115Leu	p.V115L	ENST00000369303	NM_004440.3	115	Gta/Tta																																																																														
HGF	0	MSKCC	GRCh37	7	81331964	81331964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	72	534	0	ENST00000222390.5:c.2120T>C	p.Val707Ala	p.V707A	ENST00000222390	NM_000601.4	707	gTc/gCc																																																																														
HGF	0	MSKCC	GRCh37	7	81372707	81372707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	44	536	0	ENST00000222390.5:c.827C>G	p.Pro276Arg	p.P276R	ENST00000222390	NM_000601.4	276	cCt/cGt																																																																														
EZH2	0	MSKCC	GRCh37	7	148525858	148525858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	52	670	0	ENST00000320356.2:c.599A>G	p.Gln200Arg	p.Q200R	ENST00000320356	NM_004456.4	200	cAg/cGg																																																																														
PREX2	0	MSKCC	GRCh37	8	68965431	68965431	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	99	1277	0	ENST00000288368.4:c.1043A>G	p.Glu348Gly	p.E348G	ENST00000288368	NM_024870.2	348	gAg/gGg																																																																														
PREX2	0	MSKCC	GRCh37	8	68972915	68972915	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	113	643	0	ENST00000288368.4:c.1240G>T	p.Glu414Ter	p.E414*	ENST00000288368	NM_024870.2	414	Gaa/Taa																																																																														
PRDM14	0	MSKCC	GRCh37	8	70971020	70971020	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	75	1128	0	ENST00000276594.2:c.1241A>G	p.Tyr414Cys	p.Y414C	ENST00000276594	NM_024504.3	414	tAc/tGc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738058	145738058	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	32	1015	0	ENST00000428558.2:c.2852G>C	p.Gly951Ala	p.G951A	ENST00000428558	NM_004260.3	951	gGg/gCg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145742988	145742988	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	48	182	0	ENST00000428558.2:c.116G>T	p.Arg39Leu	p.R39L	ENST00000428558	NM_004260.3	39	cGc/cTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8633334	8633334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	53	709	0	ENST00000356435.5:c.335G>T	p.Arg112Ile	p.R112I	ENST00000356435		112	aGa/aTa																																																																														
AMER1	0	MSKCC	GRCh37	X	63410680	63410680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	40	929	2	ENST00000330258.3:c.2487C>A	p.His829Gln	p.H829Q	ENST00000330258	NM_152424.3	829	caC/caA																																																																														
AMER1	0	MSKCC	GRCh37	X	63412260	63412260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	38	1106	0	ENST00000330258.3:c.907G>T	p.Gly303Cys	p.G303C	ENST00000330258	NM_152424.3	303	Ggc/Tgc																																																																														
AR	0	MSKCC	GRCh37	X	66931358	66931358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	42	811	0	ENST00000374690.3:c.2000G>A	p.Gly667Asp	p.G667D	ENST00000374690	NM_000044.3	667	gGc/gAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76776914	76776914	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	53	1017	1	ENST00000373344.5:c.7038G>T	p.Arg2346Ser	p.R2346S	ENST00000373344	NM_000489.3	2346	agG/agT																																																																														
ATRX	0	MSKCC	GRCh37	X	76937183	76937183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	44	876	0	ENST00000373344.5:c.3565C>A	p.Leu1189Ile	p.L1189I	ENST00000373344	NM_000489.3	1189	Cta/Ata																																																																														
ATRX	0	MSKCC	GRCh37	X	76938655	76938655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	38	900	0	ENST00000373344.5:c.2093A>G	p.Lys698Arg	p.K698R	ENST00000373344	NM_000489.3	698	aAg/aGg																																																																														
XIAP	0	MSKCC	GRCh37	X	123019576	123019576	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019320-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	43	823	1	ENST00000355640.3:c.64G>T	p.Glu22Ter	p.E22*	ENST00000355640		22	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	129	707	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	117	808	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101552	27101552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	144	924	0	ENST00000324856.7:c.4834A>C	p.Lys1612Gln	p.K1612Q	ENST00000324856	NM_006015.4	1612	Aaa/Caa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101559	27101569	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGGCAGGT	AGAAGGCAGGT	-			P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	139	908	0	ENST00000324856.7:c.4841_4851del	p.Gln1614ProfsTer30	p.Q1614Pfs*30	ENST00000324856	NM_006015.4	1614	cAGAAGGCAGGT/c																																																																														
IGF1R	0	MSKCC	GRCh37	15	99459268	99459268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	104	833	0	ENST00000268035.6:c.1904C>G	p.Ser635Cys	p.S635C	ENST00000268035	NM_000875.3	635	tCt/tGt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44733217	44733218	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	69	276	0	ENST00000377967.4:c.209_210del	p.Lys70SerfsTer11	p.K70Sfs*11	ENST00000377967	NM_021140.2	70	aAG/a																																																																														
RBM10	0	MSKCC	GRCh37	X	47035956	47035956	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CT			P-0019322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	144	506	0	ENST00000329236.7:c.403delinsCT	p.Lys135LeufsTer4	p.K135Lfs*4	ENST00000329236	NM_001204466.1	135	Aag/CTag																																																																														
TP53	0	MSKCC	GRCh37	17	7578439	7578439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	147	1162	1	ENST00000269305.4:c.491delA	p.Lys164SerfsTer6	p.K164Sfs*6	ENST00000269305	NM_001126112.2	164	aAg/ag																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	87	705	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553591	106553591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	20	553	4	ENST00000369096.4:c.1556C>T	p.Ala519Val	p.A519V	ENST00000369096	NM_001198.3	519	gCg/gTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812317	212812317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	52	536	0	ENST00000342788.4:c.259G>A	p.Val87Met	p.V87M	ENST00000342788	NM_005235.2	87	Gtg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	114	767	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
EPHA5	0	MSKCC	GRCh37	4	66280161	66280161	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	29	368	1	ENST00000273854.3:c.1528G>T	p.Asp510Tyr	p.D510Y	ENST00000273854	NM_004439.5	510	Gac/Tac																																																																														
MUTYH	0	MSKCC	GRCh37	1	45797759	45797759	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	198	896	0	ENST00000372115.3:c.892-1G>T		p.X298_splice	ENST00000372115	NM_001048171.1	298																																																																															
YAP1	0	MSKCC	GRCh37	11	101981641	101981641	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	32	258	1	ENST00000282441.5:c.62C>A	p.Ser21Ter	p.S21*	ENST00000282441	NM_001130145.2	21	tCg/tAg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118352582	118352582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	80	1002	2	ENST00000534358.1:c.3787C>A	p.Pro1263Thr	p.P1263T	ENST00000534358	NM_005933.3	1263	Cca/Aca																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729133	66729133	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	163	958	1	ENST00000307102.5:c.341A>T	p.Glu114Val	p.E114V	ENST00000307102	NM_002755.3	114	gAg/gTg																																																																														
NF1	0	MSKCC	GRCh37	17	29654802	29654802	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	108	549	0	ENST00000358273.4:c.5556del	p.Thr1853HisfsTer10	p.T1853Hfs*10	ENST00000358273	NM_001042492.2	1852	Ggg/gg																																																																														
NF1	0	MSKCC	GRCh37	17	29663933	29663933	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	71	430	0	ENST00000358273.4:c.6427+1G>A		p.X2143_splice	ENST00000358273	NM_001042492.2	2143																																																																															
DNMT3A	0	MSKCC	GRCh37	2	25463594	25463594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	153	811	1	ENST00000264709.3:c.2088G>T	p.Gln696His	p.Q696H	ENST00000264709	NM_175629.2	696	caG/caT																																																																														
ALK	0	MSKCC	GRCh37	2	29451930	29451930	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	102	1028	1	ENST00000389048.3:c.2635G>T	p.Gly879Cys	p.G879C	ENST00000389048	NM_004304.4	879	Ggt/Tgt																																																																														
EPCAM	0	MSKCC	GRCh37	2	47606988	47606988	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	147	887	1	ENST00000263735.4:c.738A>T	p.Gln246His	p.Q246H	ENST00000263735	NM_002354.2	246	caA/caT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212295820	212295820	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	106	780	3	ENST00000342788.4:c.2493G>T	p.Met831Ile	p.M831I	ENST00000342788	NM_005235.2	831	atG/atT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812257	212812257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	70	631	0	ENST00000342788.4:c.319G>T	p.Gly107Trp	p.G107W	ENST00000342788	NM_005235.2	107	Ggg/Tgg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46281224	46281224	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	105	778	1	ENST00000371998.3:c.4021G>T	p.Gly1341Cys	p.G1341C	ENST00000371998		1341	Ggt/Tgt																																																																														
EP300	0	MSKCC	GRCh37	22	41537209	41537209	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	134	950	0	ENST00000263253.7:c.2036A>T	p.Gln679Leu	p.Q679L	ENST00000263253	NM_001429.3	679	cAa/cTa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967261	134967261	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	88	973	0	ENST00000398015.3:c.2600G>C	p.Ser867Thr	p.S867T	ENST00000398015	NM_004441.4	867	aGc/aCc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1955056	1955056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	31	962	0	ENST00000382891.5:c.2143C>T	p.His715Tyr	p.H715Y	ENST00000382891	NM_133335.3	715	Cac/Tac																																																																														
FAT1	0	MSKCC	GRCh37	4	187541616	187541616	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	46	559	0	ENST00000441802.2:c.6124G>T	p.Glu2042Ter	p.E2042*	ENST00000441802	NM_005245.3	2042	Gag/Tag																																																																														
E2F3	0	MSKCC	GRCh37	6	20487034	20487034	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	154	718	0	ENST00000346618.3:c.999G>C	p.Glu333Asp	p.E333D	ENST00000346618	NM_001949.4	333	gaG/gaC																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528337	157528338	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGATAACAC			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	149	1131	0	ENST00000346085.5:c.6064_6072dup	p.Asp2022_Thr2024dup	p.D2022_T2024dup	ENST00000346085	NM_020732.3	2022	agg/agGGATAACACg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50358676	50358676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	104	526	0	ENST00000331340.3:c.19C>G	p.Gln7Glu	p.Q7E	ENST00000331340	NM_006060.4	7	Caa/Gaa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467693	50467693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	249	1075	0	ENST00000331340.3:c.928G>T	p.Val310Leu	p.V310L	ENST00000331340	NM_006060.4	310	Gtg/Ttg																																																																														
PREX2	0	MSKCC	GRCh37	8	68972970	68972970	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	291	891	0	ENST00000288368.4:c.1295T>A	p.Val432Glu	p.V432E	ENST00000288368	NM_024870.2	432	gTg/gAg																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465632	8465632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	159	834	0	ENST00000356435.5:c.3548G>A	p.Gly1183Glu	p.G1183E	ENST00000356435		1183	gGg/gAg																																																																														
KLF4	0	MSKCC	GRCh37	9	110249393	110249393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	498	1531	0	ENST00000374672.4:c.1180G>T	p.Ala394Ser	p.A394S	ENST00000374672	NM_004235.4	394	Gcc/Tcc																																																																														
ATR	0	MSKCC	GRCh37	3	142224136	142224138	+	missense_variant	Missense_Mutation	ONP	CAT	CAT	TAC			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	51	412	0	ENST00000350721.4:c.5039_5041delinsGTA	p.Tyr1680_Ala1681delinsCysThr	p.Y1680_A1681delinsCT	ENST00000350721	NM_001184.3	1680	tATGct/tGTAct																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435372	18435374	+	missense_variant	Missense_Mutation	ONP	TAC	TAC	AAA			P-0019323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	35	647	0	ENST00000266497.5:c.357_359delinsAAA	p.Asn119_Thr120delinsLysLys	p.N119_T120delinsKK	ENST00000266497		119	aaTACg/aaAAAg																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	82	529	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
EP300	0	MSKCC	GRCh37	22	41572925	41572925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	97	793	2	ENST00000263253.7:c.5210G>A	p.Arg1737His	p.R1737H	ENST00000263253	NM_001429.3	1737	cGc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0019329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	93	898	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
RB1	0	MSKCC	GRCh37	13	49037966	49037966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	208	532	2	ENST00000267163.4:c.2206C>T	p.Gln736Ter	p.Q736*	ENST00000267163	NM_000321.2	736	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0019331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	280	814	2	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
CDK12	0	MSKCC	GRCh37	17	37672015	37672015	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	431	592	0	ENST00000447079.4:c.2801del	p.Pro934LeufsTer12	p.P934Lfs*12	ENST00000447079	NM_015083.1	934	Cct/ct																																																																														
TSC1	0	MSKCC	GRCh37	9	135781193	135781193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	119	804	0	ENST00000298552.3:c.1772C>T	p.Pro591Leu	p.P591L	ENST00000298552	NM_001162426.1	591	cCg/cTg																																																																														
MEN1	0	MSKCC	GRCh37	11	64574650	64574650	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	145	825	0	ENST00000337652.1:c.839+1G>T		p.X280_splice	ENST00000337652	NM_130803.2	280																																																																															
MTOR	0	MSKCC	GRCh37	1	11174386	11174386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	147	754	0	ENST00000361445.4:c.7289G>T	p.Arg2430Met	p.R2430M	ENST00000361445	NM_004958.3	2430	aGg/aTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16255934	16255934	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	320	726	1	ENST00000375759.3:c.3199C>T	p.Gln1067Ter	p.Q1067*	ENST00000375759	NM_015001.2	1067	Cag/Tag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	25	550	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7576891	7576891	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	538	738	1	ENST00000269305.4:c.955A>T	p.Lys319Ter	p.K319*	ENST00000269305	NM_001126112.2	319	Aag/Tag																																																																														
RB1	0	MSKCC	GRCh37	13	48954215	48954248	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTAGGTAAATTTTTTACTTTTAGTAAAAAATT	TTTTAGGTAAATTTTTTACTTTTAGTAAAAAATT	-			P-0019337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	52	438	0	ENST00000267163.4:c.1420_1421+32del		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	477	879	1	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023366	27023366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	160	569	0	ENST00000324856.7:c.472C>A	p.Pro158Thr	p.P158T	ENST00000324856	NM_006015.4	158	Ccg/Acg																																																																														
MGA	0	MSKCC	GRCh37	15	42028466	42028469	+	frameshift_variant	Frame_Shift_Del	DEL	TGAT	TGAT	-			P-0019338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	102	599	0	ENST00000219905.7:c.4007_4010del	p.Ile1336ArgfsTer16	p.I1336Rfs*16	ENST00000219905	NM_001164273.1	1335	cTGATt/ct																																																																														
RB1	0	MSKCC	GRCh37	13	49039195	49039195	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	153	654	0	ENST00000267163.4:c.2273C>A	p.Ser758Ter	p.S758*	ENST00000267163	NM_000321.2	758	tCg/tAg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	68	485	2	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139873	55139873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	75	480	0	ENST00000257290.5:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000257290	NM_006206.4	512	Cga/Tga																																																																														
FGF19	0	MSKCC	GRCh37	11	69518542	69518542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	136	842	4	ENST00000294312.3:c.103C>T	p.His35Tyr	p.H35Y	ENST00000294312	NM_005117.2	35	Cac/Tac																																																																														
RAD52	0	MSKCC	GRCh37	12	1025542	1025542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	108	822	1	ENST00000358495.3:c.833G>A	p.Arg278Gln	p.R278Q	ENST00000358495	NM_134424.2	278	cGa/cAa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444135	49444135	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	109	976	0	ENST00000301067.7:c.3236C>G	p.Ser1079Ter	p.S1079*	ENST00000301067	NM_003482.3	1079	tCa/tGa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098965	178098965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	236	412	0	ENST00000397062.3:c.80A>G	p.Asp27Gly	p.D27G	ENST00000397062	NM_006164.4	27	gAt/gGt																																																																														
STK19	0	MSKCC	GRCh37	6	31940481	31940481	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	106	804	0	ENST00000375331.2:c.514A>T	p.Arg172Trp	p.R172W	ENST00000375331	NM_004197.1	172	Agg/Tgg																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540256	23540256	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	56	632	0	ENST00000380871.4:c.147G>C	p.Gln49His	p.Q49H	ENST00000380871	NM_006167.3	49	caG/caC																																																																														
GATA1	0	MSKCC	GRCh37	X	48649601	48649601	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	156	1096	0	ENST00000376670.3:c.85G>C	p.Glu29Gln	p.E29Q	ENST00000376670	NM_002049.3	29	Gaa/Caa																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	66	483	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	206	889	3	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99465606	99465606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	95	512	2	ENST00000268035.6:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000268035	NM_000875.3	811	Gag/Aag																																																																														
CSDE1	0	MSKCC	GRCh37	1	115276683	115276683	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	87	690	0	ENST00000438362.2:c.776A>G	p.Tyr259Cys	p.Y259C	ENST00000438362	NM_001242891.1	259	tAt/tGt																																																																														
KDR	0	MSKCC	GRCh37	4	55953811	55953811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	80	571	0	ENST00000263923.4:c.3625G>A	p.Asp1209Asn	p.D1209N	ENST00000263923	NM_002253.2	1209	Gac/Aac																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137527294	137527294	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	58	724	0	ENST00000367739.4:c.352G>T	p.Glu118Ter	p.E118*	ENST00000367739	NM_000416.2	118	Gaa/Taa																																																																														
PREX2	0	MSKCC	GRCh37	8	68992750	68992750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019340-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	28	779	0	ENST00000288368.4:c.1715C>T	p.Ser572Leu	p.S572L	ENST00000288368	NM_024870.2	572	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	26	748	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	64	534	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CBFB	0	MSKCC	GRCh37	16	67063640	67063640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	77	676	1	ENST00000412916.2:c.89C>A	p.Thr30Lys	p.T30K	ENST00000412916		30	aCg/aAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	56	665	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TBX3	0	MSKCC	GRCh37	12	115117383	115117383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	43	734	0	ENST00000257566.3:c.791del	p.Pro264LeufsTer18	p.P264Lfs*18	ENST00000257566	NM_016569.3	264	cCt/ct																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566848	212566848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	45	387	0	ENST00000342788.4:c.1333C>G	p.Leu445Val	p.L445V	ENST00000342788	NM_005235.2	445	Cta/Gta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	246	507	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDK12	0	MSKCC	GRCh37	17	37673738	37673738	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	155	762	0	ENST00000447079.4:c.2892C>G	p.Ile964Met	p.I964M	ENST00000447079	NM_015083.1	964	atC/atG																																																																														
PALB2	0	MSKCC	GRCh37	16	23646254	23646256	+	missense_variant	Missense_Mutation	ONP	ATC	ATC	TTG			P-0019349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	128	785	0	ENST00000261584.4:c.1611_1613delinsCAA	p.Ile538Asn	p.I538N	ENST00000261584	NM_024675.3	537	tcGATt/tcCAAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	179	629	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	482	850	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RIT1	0	MSKCC	GRCh37	1	155870231	155870231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1405	138	787	0	ENST00000368323.3:c.608T>C	p.Val203Ala	p.V203A	ENST00000368323	NM_006912.5	203	gTa/gCa																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380338	14380339	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCCCACGCC			P-0019350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	506	513	0	ENST00000256196.4:c.70_78dup	p.Gly24_Gly26dup	p.G24_G26dup	ENST00000256196		24	-/GGCGTGGGC																																																																														
TP53	0	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	470	758	1	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
BRCA1	0	MSKCC	GRCh37	17	41246062	41246062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	271	627	2	ENST00000357654.3:c.1486C>T	p.Arg496Cys	p.R496C	ENST00000357654	NM_007294.3	496	Cgt/Tgt																																																																														
TET1	0	MSKCC	GRCh37	10	70333290	70333290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	147	692	1	ENST00000373644.4:c.1195C>T	p.Pro399Ser	p.P399S	ENST00000373644	NM_030625.2	399	Cct/Tct																																																																														
GLI1	0	MSKCC	GRCh37	12	57864702	57864702	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	407	854	0	ENST00000228682.2:c.2179A>G	p.Thr727Ala	p.T727A	ENST00000228682	NM_005269.2	727	Act/Gct																																																																														
POLE	0	MSKCC	GRCh37	12	133220025	133220025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	279	648	0	ENST00000320574.5:c.4412G>T	p.Arg1471Leu	p.R1471L	ENST00000320574	NM_006231.2	1471	cGc/cTc																																																																														
RB1	0	MSKCC	GRCh37	13	48953739	48953747	+	inframe_deletion	In_Frame_Del	DEL	CTTGGAGTT	CTTGGAGTT	-			P-0019362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	211	313	0	ENST00000267163.4:c.1343_1351del	p.Leu448_Val450del	p.L448_V450del	ENST00000267163	NM_000321.2	448	CTTGGAGTT/-																																																																														
IDH2	0	MSKCC	GRCh37	15	90633771	90633771	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	171	605	0	ENST00000330062.3:c.313C>T	p.Gln105Ter	p.Q105*	ENST00000330062	NM_002168.2	105	Cag/Tag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356382	66356382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	193	500	2	ENST00000273854.3:c.1115G>T	p.Ser372Ile	p.S372I	ENST00000273854	NM_004439.5	372	aGt/aTt																																																																														
CRLF2	0	MSKCC	GRCh37	X	1325478	1325478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	132	469	0	ENST00000381566.1:c.197A>G	p.Glu66Gly	p.E66G	ENST00000381566		66	gAg/gGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	317	713	3	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11998901	11998902	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	116	278	0	ENST00000353533.5:c.404dup	p.Thr136AsnfsTer4	p.T136Nfs*4	ENST00000353533	NM_003010.3	135	tca/tCca																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	230	758	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252962	36252962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	114	455	0	ENST00000300305.3:c.400G>C	p.Ala134Pro	p.A134P	ENST00000300305		134	Gct/Cct																																																																														
SPEN	0	MSKCC	GRCh37	1	16257998	16257999	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	19	443	0	ENST00000375759.3:c.5263_5264del	p.Ser1755TyrfsTer12	p.S1755Yfs*12	ENST00000375759	NM_015001.2	1755	AGt/t																																																																														
SPEN	0	MSKCC	GRCh37	1	16259374	16259375	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	59	326	0	ENST00000375759.3:c.6641_6642del	p.Glu2214AlafsTer11	p.E2214Afs*11	ENST00000375759	NM_015001.2	2213	acAGag/acag																																																																														
SPEN	0	MSKCC	GRCh37	1	16259744	16259744	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	59	648	0	ENST00000375759.3:c.7009C>T	p.Arg2337Ter	p.R2337*	ENST00000375759	NM_015001.2	2337	Cga/Tga																																																																														
GATA3	0	MSKCC	GRCh37	10	8115710	8115711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	317	478	0	ENST00000346208.3:c.1060dupC	p.Leu354ProfsTer17	p.L354Pfs*17	ENST00000346208		352	-/C																																																																														
DOT1L	0	MSKCC	GRCh37	19	2206746	2206746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	194	707	0	ENST00000398665.3:c.806C>G	p.Ser269Trp	p.S269W	ENST00000398665	NM_032482.2	269	tCg/tGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	480	763	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
AXIN1	0	MSKCC	GRCh37	16	343545	343545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	62	766	3	ENST00000262320.3:c.2129C>T	p.Ala710Val	p.A710V	ENST00000262320	NM_003502.3	710	gCg/gTg																																																																														
RARA	0	MSKCC	GRCh37	17	38510626	38510626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	422	765	1	ENST00000254066.5:c.880C>T	p.Arg294Trp	p.R294W	ENST00000254066	NM_000964.3	294	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112128170	112128170	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	111	493	1	ENST00000257430.4:c.673G>T	p.Glu225Ter	p.E225*	ENST00000257430	NM_000038.5	225	Gaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112174266	112174267	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0019369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	94	418	0	ENST00000257430.4:c.2975_2976del	p.Ser992LysfsTer15	p.S992Kfs*15	ENST00000257430	NM_000038.5	992	aGT/a																																																																														
ESR1	0	MSKCC	GRCh37	6	152163843	152163843	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	185	484	0	ENST00000206249.3:c.564C>A	p.Cys188Ter	p.C188*	ENST00000206249	NM_000125.3	188	tgC/tgA																																																																														
BRAF	0	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	204	302	1	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4110558	4110558	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	149	697	0	ENST00000262948.5:c.399C>G	p.Phe133Leu	p.F133L	ENST00000262948	NM_030662.3	133	ttC/ttG																																																																														
HGF	0	MSKCC	GRCh37	7	81381466	81381466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	100	353	0	ENST00000222390.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000222390	NM_000601.4	199	Gaa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106364	27106364	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	297	507	1	ENST00000324856.7:c.5975C>G	p.Ser1992Ter	p.S1992*	ENST00000324856	NM_006015.4	1992	tCa/tGa																																																																														
RB1	0	MSKCC	GRCh37	13	48955407	48955407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	87	411	1	ENST00000267163.4:c.1523C>T	p.Ser508Phe	p.S508F	ENST00000267163	NM_000321.2	508	tCt/tTt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246538	105246538	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	157	583	2	ENST00000349310.3:c.62C>A	p.Thr21Asn	p.T21N	ENST00000349310	NM_001014432.1	21	aCc/aAc																																																																														
MGA	0	MSKCC	GRCh37	15	42042175	42042175	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	194	753	0	ENST00000219905.7:c.6370G>C	p.Glu2124Gln	p.E2124Q	ENST00000219905	NM_001164273.1	2124	Gaa/Caa																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66782075	66782075	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	105	425	0	ENST00000307102.5:c.1042G>C	p.Glu348Gln	p.E348Q	ENST00000307102	NM_002755.3	348	Gag/Cag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3843589	3843590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	114	543	0	ENST00000262367.5:c.1012_1013dup	p.Gln338HisfsTer17	p.Q338Hfs*17	ENST00000262367	NM_004380.2	338	caa/caCAa																																																																														
EZH1	0	MSKCC	GRCh37	17	40870080	40870080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	255	480	0	ENST00000428826.2:c.937C>T	p.His313Tyr	p.H313Y	ENST00000428826		313	Cat/Tat																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602939	10602939	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	446	856	0	ENST00000171111.5:c.640-1G>C		p.X214_splice	ENST00000171111	NM_203500.1	214																																																																															
APC	0	MSKCC	GRCh37	5	112174754	112174754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	119	360	2	ENST00000257430.4:c.3463G>A	p.Glu1155Lys	p.E1155K	ENST00000257430	NM_000038.5	1155	Gaa/Aaa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956563	93956563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	96	362	0	ENST00000369303.4:c.2673C>A	p.Asp891Glu	p.D891E	ENST00000369303	NM_004440.3	891	gaC/gaA																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509729	106509729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	134	600	2	ENST00000359195.3:c.1723C>T	p.Leu575Phe	p.L575F	ENST00000359195	NM_002649.2	575	Ctc/Ttc																																																																														
GATA1	0	MSKCC	GRCh37	X	48649634	48649634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	208	493	0	ENST00000376670.3:c.118G>C	p.Gly40Arg	p.G40R	ENST00000376670	NM_002049.3	40	Ggc/Cgc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223349	53223349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	184	353	1	ENST00000375401.3:c.4010G>A	p.Arg1337Lys	p.R1337K	ENST00000375401	NM_004187.3	1337	aGa/aAa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53225868	53225868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	180	392	2	ENST00000375401.3:c.2981G>A	p.Arg994Lys	p.R994K	ENST00000375401	NM_004187.3	994	aGg/aAg																																																																														
BTK	0	MSKCC	GRCh37	X	100626662	100626662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	156	317	0	ENST00000308731.7:c.268G>C	p.Glu90Gln	p.E90Q	ENST00000308731	NM_000061.2	90	Gag/Cag																																																																														
RIT1	0	MSKCC	GRCh37	1	155874286	155874286	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	110	409	0	ENST00000368323.3:c.245T>G	p.Phe82Cys	p.F82C	ENST00000368323	NM_006912.5	82	tTt/tGt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717634	89717647	+	frameshift_variant	Frame_Shift_Del	DEL	TAAAGGTGAAGATA	TAAAGGTGAAGATA	-			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	108	495	0	ENST00000371953.3:c.661_674del	p.Lys221PhefsTer17	p.K221Ffs*17	ENST00000371953	NM_000314.4	220	cTAAAGGTGAAGATA/c																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134121	41134121	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	105	343	0	ENST00000379561.5:c.1507del	p.Val503SerfsTer14	p.V503Sfs*14	ENST00000379561	NM_002015.3	503	Gtc/tc																																																																														
TP53	0	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	136	720	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
NFE2L2	0	MSKCC	GRCh37	2	178098950	178098950	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	48	317	0	ENST00000397062.3:c.95T>G	p.Val32Gly	p.V32G	ENST00000397062	NM_006164.4	32	gTa/gGa																																																																														
CHEK2	0	MSKCC	GRCh37	22	29092922	29092922	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	132	500	0	ENST00000328354.6:c.1062A>C	p.Leu354Phe	p.L354F	ENST00000328354	NM_007194.3	354	ttA/ttC																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138461563	138461563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	97	456	0	ENST00000289153.2:c.458G>T	p.Arg153Leu	p.R153L	ENST00000289153	NM_006219.2	153	cGc/cTc																																																																														
ATR	0	MSKCC	GRCh37	3	142281370	142281370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	72	513	0	ENST00000350721.4:c.874G>A	p.Glu292Lys	p.E292K	ENST00000350721	NM_001184.3	292	Gaa/Aaa																																																																														
TET2	0	MSKCC	GRCh37	4	106193743	106193743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	67	248	0	ENST00000380013.4:c.4205A>G	p.Asp1402Gly	p.D1402G	ENST00000380013	NM_001127208.2	1402	gAc/gGc																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538822	23538822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	102	353	1	ENST00000380871.4:c.617C>T	p.Ser206Phe	p.S206F	ENST00000380871	NM_006167.3	206	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	60	814	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	35	493	2	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	87	752	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	33	513	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	86	609	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372098	55372098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62642516		P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	66	521	1	ENST00000297316.4:c.788C>T	p.Pro263Leu	p.P263L	ENST00000297316	NM_022454.3	263	cCg/cTg																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740809	58740809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	89	643	0	ENST00000305921.3:c.1714C>T	p.Arg572Ter	p.R572*	ENST00000305921	NM_003620.3	572	Cga/Tga																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841231	15841242	+	inframe_deletion	In_Frame_Del	DEL	AGCCGGAGCCGG	AGCCGGAGCCGG	-			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	30	115	0	ENST00000307771.7:c.1332_1343delGAGCCGGAGCCG	p.Ser445_Arg448del	p.S445_R448del	ENST00000307771	NM_005089.3	439	AGCCGGAGCCGG/-																																																																														
APC	0	MSKCC	GRCh37	5	112175825	112175825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	20	254	1	ENST00000257430.4:c.4534G>A	p.Asp1512Asn	p.D1512N	ENST00000257430	NM_000038.5	1512	Gat/Aat																																																																														
ELF3	0	MSKCC	GRCh37	1	201981273	201981329	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGGACCAACTCCATGCCCAGCTGCGAGACCTCAGTGAGTCCAGGCCCCTGGAGGCT	GGGGACCAACTCCATGCCCAGCTGCGAGACCTCAGTGAGTCCAGGCCCCTGGAGGCT	-			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	35	718	0	ENST00000359651.3:c.357_385+28del		p.X119_splice	ENST00000359651		119																																																																															
TGFBR2	0	MSKCC	GRCh37	3	30713727	30713727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	82	410	0	ENST00000359013.4:c.1127G>A	p.Gly376Asp	p.G376D	ENST00000359013	NM_001024847.2	376	gGc/gAc																																																																														
ATR	0	MSKCC	GRCh37	3	142218559	142218559	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	22	365	0	ENST00000350721.4:c.5290T>C	p.Ser1764Pro	p.S1764P	ENST00000350721	NM_001184.3	1764	Tcc/Ccc																																																																														
APC	0	MSKCC	GRCh37	5	112175954	112175954	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	24	323	0	ENST00000257430.4:c.4663A>T	p.Lys1555Ter	p.K1555*	ENST00000257430	NM_000038.5	1555	Aaa/Taa																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519666	137519666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	25	314	0	ENST00000367739.4:c.972G>T	p.Glu324Asp	p.E324D	ENST00000367739	NM_000416.2	324	gaG/gaT																																																																														
KMT2C	0	MSKCC	GRCh37	7	151843748	151843748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	36	463	1	ENST00000262189.6:c.13967C>T	p.Ala4656Val	p.A4656V	ENST00000262189	NM_170606.2	4656	gCg/gTg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	49	580	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
BRIP1	0	MSKCC	GRCh37	17	59878797	59878797	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	58	382	0	ENST00000259008.2:c.957del	p.Ser320ValfsTer18	p.S320Vfs*18	ENST00000259008	NM_032043.2	319	atT/at																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922648	44922729	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTTTGTTTTTTTGACAGATGAGACCAACAGGAGTTGCACAGGTACGATCTACTGGAATTCCTAATGGGCCAACAGCTGAC	TCCTTTGTTTTTTTGACAGATGAGACCAACAGGAGTTGCACAGGTACGATCTACTGGAATTCCTAATGGGCCAACAGCTGAC	-			P-0019373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	23	245	0	ENST00000377967.4:c.1528-17_1592del		p.X510_splice	ENST00000377967	NM_021140.2	510																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	16	623	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1220488	1220488	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	42	855	0	ENST00000326873.7:c.581A>C	p.Asp194Ala	p.D194A	ENST00000326873	NM_000455.4	194	gAc/gCc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	202	747	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0019376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	140	659	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31376726	31376726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	42	528	4	ENST00000328111.2:c.721G>A	p.Ala241Thr	p.A241T	ENST00000328111	NM_006892.3	241	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	349	1510	2	ENST00000269305.4:c.389T>A	p.Leu130His	p.L130H	ENST00000269305	NM_001126112.2	130	cTc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	370	904	4	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	167	605	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
ATM	0	MSKCC	GRCh37	11	108141874	108141874	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	182	459	4	ENST00000278616.4:c.2921+1G>A		p.X974_splice	ENST00000278616	NM_000051.3	974																																																																															
ARAF	0	MSKCC	GRCh37	X	47426737	47426737	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200106543		P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	115	775	0	ENST00000377045.4:c.982C>T	p.Arg328Trp	p.R328W	ENST00000377045	NM_001654.4	328	Cgg/Tgg																																																																														
MTOR	0	MSKCC	GRCh37	1	11319346	11319346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	251	580	8	ENST00000361445.4:c.121G>A	p.Ala41Thr	p.A41T	ENST00000361445	NM_004958.3	41	Gcc/Acc																																																																														
SESN3	0	MSKCC	GRCh37	11	94924728	94924728	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	356	892	0	ENST00000536441.1:c.182T>A	p.Phe61Tyr	p.F61Y	ENST00000536441	NM_144665.3	61	tTt/tAt																																																																														
ATM	0	MSKCC	GRCh37	11	108236083	108236083	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	248	645	7	ENST00000278616.4:c.9019G>T	p.Glu3007Ter	p.E3007*	ENST00000278616	NM_000051.3	3007	Gaa/Taa																																																																														
SOX9	0	MSKCC	GRCh37	17	70120490	70120491	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	557	1311	1	ENST00000245479.2:c.1495dup	p.Glu499GlyfsTer79	p.E499Gfs*79	ENST00000245479	NM_000346.3	498	tgg/tGgg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573661	48573711	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCAGGTTAGTCTTATAAGAGTTTTTCTATACCCTCTATGGTGGCAGATTT	TTCAGGTTAGTCTTATAAGAGTTTTTCTATACCCTCTATGGTGGCAGATTT	-			P-0019377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	34	408	2	ENST00000342988.3:c.245_249+46del		p.X82_splice	ENST00000342988	NM_005359.5	82																																																																															
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	154	763	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	252	643	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SOX17	0	MSKCC	GRCh37	8	55371799	55371820	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCGCGCTGGGCCCCGAG	GGCGGCCGCGCTGGGCCCCGAG	-			P-0019378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	67	138	0	ENST00000297316.4:c.499_520del	p.Leu167TrpfsTer213	p.L167Wfs*213	ENST00000297316	NM_022454.3	163	caGGCGGCCGCGCTGGGCCCCGAG/ca																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138402532	138402532	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	227	508	0	ENST00000289153.2:c.2413A>T	p.Lys805Ter	p.K805*	ENST00000289153	NM_006219.2	805	Aaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	166	383	0				ENST00000310581	NM_198253.2																																																																																
PAK7	0	MSKCC	GRCh37	20	9561547	9561547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	171	428	0	ENST00000353224.5:c.235G>A	p.Glu79Lys	p.E79K	ENST00000353224	NM_177990.2	79	Gaa/Aaa																																																																														
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	157	370	0	ENST00000369535.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000369535	NM_002524.4	12	Ggt/Agt																																																																														
FLCN	0	MSKCC	GRCh37	17	17124889	17124889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	245	637	0	ENST00000285071.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000285071	NM_144997.5	278	cCg/cTg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31387101	31387101	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	274	680	0	ENST00000328111.2:c.1726C>T	p.Arg576Ter	p.R576*	ENST00000328111	NM_006892.3	576	Cga/Tga																																																																														
NRAS	0	MSKCC	GRCh37	1	115256562	115256562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	243	551	0	ENST00000369535.4:c.149C>T	p.Thr50Ile	p.T50I	ENST00000369535	NM_002524.4	50	aCc/aTc																																																																														
PARK2	0	MSKCC	GRCh37	6	162683747	162683747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	194	507	0	ENST00000366898.1:c.222G>A	p.Trp74Ter	p.W74*	ENST00000366898	NM_004562.2	74	tgG/tgA																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857334	9857334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	141	401	0	ENST00000330684.3:c.4067C>T	p.Ser1356Phe	p.S1356F	ENST00000330684	NM_001134407.1	1356	tCt/tTt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857061	9857061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	99	280	0	ENST00000330684.3:c.4340C>T	p.Ser1447Phe	p.S1447F	ENST00000330684	NM_001134407.1	1447	tCc/tTc																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2492117	2492117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	398	832	0	ENST00000355716.4:c.515C>T	p.Pro172Leu	p.P172L	ENST00000355716	NM_003820.2	172	cCc/cTc																																																																														
ELF3	0	MSKCC	GRCh37	1	201980370	201980370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	333	851	1	ENST00000359651.3:c.106G>A	p.Gly36Arg	p.G36R	ENST00000359651		36	Ggg/Agg																																																																														
H3F3C	0	MSKCC	GRCh37	12	31945090	31945090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	212	672	2	ENST00000340398.3:c.11C>T	p.Thr4Ile	p.T4I	ENST00000340398	NM_001013699.2	4	aCc/aTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434961	49434961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	259	522	0	ENST00000301067.7:c.6592C>T	p.Pro2198Ser	p.P2198S	ENST00000301067	NM_003482.3	2198	Ccc/Tcc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9916199	9916199	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	193	483	0	ENST00000330684.3:c.2090A>C	p.Asn697Thr	p.N697T	ENST00000330684	NM_001134407.1	697	aAc/aCc																																																																														
NF1	0	MSKCC	GRCh37	17	29684326	29684326	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	32	440	0	ENST00000358273.4:c.7909del	p.Arg2637GlufsTer7	p.R2637Efs*7	ENST00000358273	NM_001042492.2	2637	Cga/ga																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740535	58740535	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	278	609	0	ENST00000305921.3:c.1440A>C	p.Lys480Asn	p.K480N	ENST00000305921	NM_003620.3	480	aaA/aaC																																																																														
NCOA3	0	MSKCC	GRCh37	20	46265315	46265315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	127	331	0	ENST00000371998.3:c.2185C>T	p.Pro729Ser	p.P729S	ENST00000371998		729	Cct/Tct																																																																														
AURKA	0	MSKCC	GRCh37	20	54948572	54948572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	174	395	0	ENST00000312783.6:c.746C>T	p.Ser249Leu	p.S249L	ENST00000312783	NM_198436.1	249	tCg/tTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928072	178928101	+	inframe_deletion	In_Frame_Del	DEL	TGGATTAGAAGATTTGCTGAACCCTATTGG	TGGATTAGAAGATTTGCTGAACCCTATTGG	-			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	73	622	0	ENST00000263967.3:c.1352_1381del	p.Gly451_Gly460del	p.G451_G460del	ENST00000263967	NM_006218.2	450	caTGGATTAGAAGATTTGCTGAACCCTATTGGt/cat																																																																														
MDC1	0	MSKCC	GRCh37	6	30680458	30680458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	161	427	0	ENST00000376406.3:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000376406	NM_014641.2	421	Gag/Aag																																																																														
MET	0	MSKCC	GRCh37	7	116395472	116395472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	256	513	0	ENST00000397752.3:c.1765G>A	p.Gly589Arg	p.G589R	ENST00000397752	NM_000245.2	589	Gga/Aga																																																																														
ABL1	0	MSKCC	GRCh37	9	133759803	133759803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	177	516	0	ENST00000318560.5:c.2126C>T	p.Ser709Phe	p.S709F	ENST00000318560	NM_005157.4	709	tCc/tTc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932044	36932047	+	missense_variant	Missense_Mutation	ONP	CCTC	CCTC	TCTC			P-0019379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	254	624	0	ENST00000361632.4:c.2425delGinsA	p.Asp809Asn	p.D809N	ENST00000361632		809	GAGGac/GAGAac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	381	764	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	70	737	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																														
CDH1	0	MSKCC	GRCh37	16	68772248	68772248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	107	1024	2	ENST00000261769.5:c.97G>A	p.Asp33Asn	p.D33N	ENST00000261769	NM_004360.3	33	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	72	573	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49422700	49422700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	85	634	0	ENST00000301067.7:c.14293G>T	p.Val4765Phe	p.V4765F	ENST00000301067	NM_003482.3	4765	Gtc/Ttc																																																																														
RAD51B	0	MSKCC	GRCh37	14	68292215	68292219	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTG	AGGTG	GTTA			P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	43	404	0	ENST00000487270.1:c.119_123delinsGTTA	p.Lys40SerfsTer2	p.K40Sfs*2	ENST00000487270	NM_133509.3	40	aAGGTG/aGTTA																																																																														
SOX9	0	MSKCC	GRCh37	17	70120341	70120341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1636	177	1320	0	ENST00000245479.2:c.1343C>A	p.Ser448Tyr	p.S448Y	ENST00000245479	NM_000346.3	448	tCc/tAc																																																																														
BABAM1	0	MSKCC	GRCh37	19	17389754	17389754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	128	914	3	ENST00000359435.4:c.887C>T	p.Ala296Val	p.A296V	ENST00000359435	NM_001033549.1	296	gCg/gTg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981858	70981858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	104	848	2	ENST00000276594.2:c.238C>T	p.Pro80Ser	p.P80S	ENST00000276594	NM_024504.3	80	Ccg/Tcg																																																																														
RBM10	0	MSKCC	GRCh37	X	47044278	47044778	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGAAAGGTGGTCAGGAGCCGTAGCCCAGAGGCCAGATGAAGCCTTCTGCAGTGGTTCGGACTAGGGATAGTGGCTGGCCCGTGTTTGAGGATGCAGGGCAGTGGGTCAGCAGATAGAGTTAGTAGCCCCAGGGTCATGAGGGTTCTGGGAACCTCACCTCCACCCTCACCCCCAGATTGCCAAGGACATGGAACGCTGGGCCCGCAGTCTCAACAAACAAAAAGAAAACTTCAAAAATAGCTTCCAGCCTATCAGCTCCCTGCGAGATGACGAGAGGCGGGAGTCAGCCACTGCAGATGCTGGCTATGCCATCCTCGAGAAGAAGGTGTGTTGGGGCCACCCCCCTGCACCCTGCCCCACAATCTTGTCCTTCCTTTGGGCCCTCTGTGGAGTCCCTGAATTTCTGTGTCCCTCCACCCCAGGGAGCACTAGCCGAGAGACAGCACACCAGCATGGATCTCCCGAAATTGGCCAGTGACGACCGCCCAGTGAGTGCCCAA	GGGAAAGGTGGTCAGGAGCCGTAGCCCAGAGGCCAGATGAAGCCTTCTGCAGTGGTTCGGACTAGGGATAGTGGCTGGCCCGTGTTTGAGGATGCAGGGCAGTGGGTCAGCAGATAGAGTTAGTAGCCCCAGGGTCATGAGGGTTCTGGGAACCTCACCTCCACCCTCACCCCCAGATTGCCAAGGACATGGAACGCTGGGCCCGCAGTCTCAACAAACAAAAAGAAAACTTCAAAAATAGCTTCCAGCCTATCAGCTCCCTGCGAGATGACGAGAGGCGGGAGTCAGCCACTGCAGATGCTGGCTATGCCATCCTCGAGAAGAAGGTGTGTTGGGGCCACCCCCCTGCACCCTGCCCCACAATCTTGTCCTTCCTTTGGGCCCTCTGTGGAGTCCCTGAATTTCTGTGTCCCTCCACCCCAGGGAGCACTAGCCGAGAGACAGCACACCAGCATGGATCTCCCGAAATTGGCCAGTGACGACCGCCCAGTGAGTGCCCAA	-			P-0019384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	37	63	0	ENST00000329236.7:c.1717-174_1932+14del		p.X573_splice	ENST00000329236	NM_001204466.1	573																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	117	421	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0019385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	444	518	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PTEN	0	MSKCC	GRCh37	10	89725041	89725046	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGGTG	TAGGTG	-			P-0019385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	99	269	0	ENST00000371953.3:c.1027-3_1029del		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
MAP3K1	0	MSKCC	GRCh37	5	56177707	56177708	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	162	327	0	ENST00000399503.3:c.2681dup	p.Glu895GlyfsTer9	p.E895Gfs*9	ENST00000399503	NM_005921.1	894	ctg/cTtg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929090	44929090	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	199	589	0	ENST00000377967.4:c.2191del	p.Ser731AlafsTer24	p.S731Afs*24	ENST00000377967	NM_021140.2	730	acA/ac																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	277	764	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	202	632	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739064	40739064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	138	773	1	ENST00000373198.4:c.3220G>A	p.Val1074Ile	p.V1074I	ENST00000373198	NM_133170.3	1074	Gtt/Att																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	56	436	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	201	526	0	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
AMER1	0	MSKCC	GRCh37	X	63411489	63411489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200798538		P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	183	1084	1	ENST00000330258.3:c.1678C>T	p.Arg560Trp	p.R560W	ENST00000330258	NM_152424.3	560	Cgg/Tgg																																																																														
AMER1	0	MSKCC	GRCh37	X	63411717	63411717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	269	1080	0	ENST00000330258.3:c.1450G>T	p.Gly484Cys	p.G484C	ENST00000330258	NM_152424.3	484	Ggt/Tgt																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45655413	45655413	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1194	77	1037	1	ENST00000407780.3:c.439del	p.His147ThrfsTer15	p.H147Tfs*15	ENST00000407780	NM_001283052.1	147	Cac/ac																																																																														
EP300	0	MSKCC	GRCh37	22	41513352	41513352	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	46	772	1	ENST00000263253.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000263253	NM_001429.3	86	Cga/Tga																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	406	996	5	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459759	149459759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	176	865	3	ENST00000286301.3:c.448C>T	p.Arg150Cys	p.R150C	ENST00000286301	NM_005211.3	150	Cgc/Tgc																																																																														
CASP8	0	MSKCC	GRCh37	2	202131411	202131411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	67	663	0	ENST00000358485.4:c.379C>T	p.Arg127Ter	p.R127*	ENST00000358485	NM_001080125.1	127	Cga/Tga																																																																														
CARD11	0	MSKCC	GRCh37	7	2959106	2959106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	243	819	0	ENST00000396946.4:c.2410C>T	p.Arg804Cys	p.R804C	ENST00000396946	NM_032415.4	804	Cgt/Tgt																																																																														
RET	0	MSKCC	GRCh37	10	43609084	43609086	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	121	1156	4	ENST00000355710.3:c.1846_1848delGAG	p.Glu616del	p.E616del	ENST00000355710	NM_020975.4	614	GAG/-																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100877	27100877	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	176	726	0	ENST00000324856.7:c.4159G>T	p.Glu1387Ter	p.E1387*	ENST00000324856	NM_006015.4	1387	Gag/Tag																																																																														
IGF2	0	MSKCC	GRCh37	11	2154294	2154294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	120	1233	1	ENST00000434045.2:c.634C>T	p.Arg212Cys	p.R212C	ENST00000434045	NM_001127598.1	212	Cgt/Tgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425890	49425890	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	151	865	0	ENST00000301067.7:c.12598C>T	p.Gln4200Ter	p.Q4200*	ENST00000301067	NM_003482.3	4200	Cag/Tag																																																																														
RB1	0	MSKCC	GRCh37	13	49039436	49039437	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	95	838	0	ENST00000267163.4:c.2425dup	p.Leu809ProfsTer6	p.L809Pfs*6	ENST00000267163	NM_000321.2	807	-/C																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872956	35872956	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	122	567	0	ENST00000216797.5:c.276A>T	p.Glu92Asp	p.E92D	ENST00000216797	NM_020529.2	92	gaA/gaT																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43762148	43762148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	165	1008	0	ENST00000382044.4:c.1297G>A	p.Val433Ile	p.V433I	ENST00000382044	NM_001141980.1	433	Gta/Ata																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9916137	9916137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	93	524	0	ENST00000330684.3:c.2152G>A	p.Val718Ile	p.V718I	ENST00000330684	NM_001134407.1	718	Gtc/Atc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81942031	81942031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	119	590	0	ENST00000359376.3:c.1568C>A	p.Pro523His	p.P523H	ENST00000359376	NM_002661.3	523	cCt/cAt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15952178	15952178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	139	617	1	ENST00000268712.3:c.6517G>A	p.Ala2173Thr	p.A2173T	ENST00000268712	NM_006311.3	2173	Gca/Aca																																																																														
NF1	0	MSKCC	GRCh37	17	29663907	29663907	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	72	460	1	ENST00000358273.4:c.6402T>A	p.Cys2134Ter	p.C2134*	ENST00000358273	NM_001042492.2	2134	tgT/tgA																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18274187	18274187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	168	918	0	ENST00000222254.8:c.1405C>T	p.Arg469Trp	p.R469W	ENST00000222254	NM_005027.3	469	Cgg/Tgg																																																																														
CCNE1	0	MSKCC	GRCh37	19	30308412	30308412	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	48	826	2	ENST00000262643.3:c.430del	p.Met144CysfsTer9	p.M144Cfs*9	ENST00000262643	NM_001238.2	142	ccA/cc																																																																														
POLD1	0	MSKCC	GRCh37	19	50921185	50921185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	128	1126	1	ENST00000440232.2:c.3305C>A	p.Pro1102His	p.P1102H	ENST00000440232	NM_002691.3	1102	cCt/cAt																																																																														
XPO1	0	MSKCC	GRCh37	2	61722664	61722664	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	70	653	0	ENST00000401558.2:c.973T>C	p.Phe325Leu	p.F325L	ENST00000401558	NM_003400.3	325	Ttt/Ctt																																																																														
FAT1	0	MSKCC	GRCh37	4	187628503	187628503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	242	962	1	ENST00000441802.2:c.2479T>C	p.Tyr827His	p.Y827H	ENST00000441802	NM_005245.3	827	Tat/Cat																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591259	67591260	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	68	598	0	ENST00000274335.5:c.1760_1761del	p.Lys587ArgfsTer14	p.K587Rfs*14	ENST00000274335		586	cAA/c																																																																														
DAXX	0	MSKCC	GRCh37	6	33288965	33288965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	94	434	0	ENST00000374542.5:c.587C>T	p.Ala196Val	p.A196V	ENST00000374542	NM_001141970.1	196	gCg/gTg																																																																														
FYN	0	MSKCC	GRCh37	6	112024114	112024114	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	95	692	0	ENST00000368678.4:c.671T>G	p.Leu224Arg	p.L224R	ENST00000368678		224	cTt/cGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151835940	151835940	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	162	634	0	ENST00000262189.6:c.14584T>G	p.Phe4862Val	p.F4862V	ENST00000262189	NM_170606.2	4862	Ttt/Gtt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98248079	98248079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	42	706	0	ENST00000331920.6:c.472A>G	p.Met158Val	p.M158V	ENST00000331920	NM_000264.3	158	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	47	742	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	71	1020	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81972458	81972458	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	44	603	0	ENST00000359376.3:c.3251T>C	p.Phe1084Ser	p.F1084S	ENST00000359376	NM_002661.3	1084	tTt/tCt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600369	10600369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	668	1306	0	ENST00000171111.5:c.1486G>T	p.Glu496Ter	p.E496*	ENST00000171111	NM_203500.1	496	Gag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097703	27097703	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	477	939	0	ENST00000324856.7:c.3292C>T	p.Gln1098Ter	p.Q1098*	ENST00000324856	NM_006015.4	1098	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	748	1008	4	ENST00000269305.4:c.592del	p.Glu198LysfsTer49	p.E198Kfs*49	ENST00000269305	NM_001126112.2	198	Gaa/aa																																																																														
ARID2	0	MSKCC	GRCh37	12	46246344	46246344	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	230	445	0	ENST00000334344.6:c.4438G>T	p.Gly1480Ter	p.G1480*	ENST00000334344	NM_152641.2	1480	Gga/Tga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727138	40727138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	228	799	2	ENST00000373198.4:c.3826G>A	p.Val1276Met	p.V1276M	ENST00000373198	NM_133170.3	1276	Gtg/Atg																																																																														
MUTYH	0	MSKCC	GRCh37	1	45797731	45797731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	536	1036	0	ENST00000372115.3:c.919G>T	p.Gly307Trp	p.G307W	ENST00000372115	NM_001048171.1	307	Ggg/Tgg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120465304	120465304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	169	620	0	ENST00000256646.2:c.4957C>T	p.His1653Tyr	p.H1653Y	ENST00000256646	NM_024408.3	1653	Cac/Tac																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120466420	120466420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	163	782	0	ENST00000256646.2:c.4699C>T	p.Arg1567Trp	p.R1567W	ENST00000256646	NM_024408.3	1567	Cgg/Tgg																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612644	228612644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	394	965	0	ENST00000366696.1:c.383C>A	p.Ala128Glu	p.A128E	ENST00000366696	NM_003493.2	128	gCa/gAa																																																																														
MYOD1	0	MSKCC	GRCh37	11	17743028	17743028	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	572	1208	0	ENST00000250003.3:c.939del	p.Asn314ThrfsTer22	p.N314Tfs*22	ENST00000250003	NM_002478.4	312	aaC/aa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71943789	71943789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	257	913	1	ENST00000298229.2:c.1832G>T	p.Arg611Leu	p.R611L	ENST00000298229	NM_001567.3	611	cGc/cTc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118307567	118307567	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	428	858	0	ENST00000534358.1:c.340G>C	p.Ala114Pro	p.A114P	ENST00000534358	NM_005933.3	114	Gcg/Ccg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244897	46244898	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	194	787	1	ENST00000334344.6:c.2991_2992delinsTT	p.Gln997_Gly998delinsHisTer	p.Q997_G998delinsH*	ENST00000334344	NM_152641.2	997	caGGga/caTTga																																																																														
LATS2	0	MSKCC	GRCh37	13	21557489	21557489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	594	731	0	ENST00000382592.4:c.2356G>T	p.Gly786Cys	p.G786C	ENST00000382592	NM_014572.2	786	Ggc/Tgc																																																																														
IRS2	0	MSKCC	GRCh37	13	110434920	110434920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	451	1735	1	ENST00000375856.3:c.3481G>T	p.Val1161Leu	p.V1161L	ENST00000375856	NM_003749.2	1161	Gtg/Ttg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30068922	30068922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1445	538	1158	2	ENST00000331968.5:c.2007G>A	p.Met669Ile	p.M669I	ENST00000331968	NM_002742.2	669	atG/atA																																																																														
PRKD1	0	MSKCC	GRCh37	14	30102103	30102103	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	422	855	0	ENST00000331968.5:c.1364A>T	p.Gln455Leu	p.Q455L	ENST00000331968	NM_002742.2	455	cAg/cTg																																																																														
DICER1	0	MSKCC	GRCh37	14	95557417	95557417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	3709	604	1	ENST00000343455.3:c.5557C>T	p.Pro1853Ser	p.P1853S	ENST00000343455	NM_177438.2	1853	Cct/Tct																																																																														
SPRED1	0	MSKCC	GRCh37	15	38591732	38591732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	250	603	0	ENST00000299084.4:c.191G>T	p.Arg64Leu	p.R64L	ENST00000299084	NM_152594.2	64	cGa/cTa																																																																														
MGA	0	MSKCC	GRCh37	15	42053936	42053936	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	335	450	0	ENST00000219905.7:c.7399-1G>T		p.X2467_splice	ENST00000219905	NM_001164273.1	2467																																																																															
GRIN2A	0	MSKCC	GRCh37	16	10273887	10273887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	542	1191	2	ENST00000330684.3:c.382C>A	p.His128Asn	p.H128N	ENST00000330684	NM_001134407.1	128	Cat/Aat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993917	72993917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	180	726	1	ENST00000268489.5:c.128C>T	p.Thr43Ile	p.T43I	ENST00000268489	NM_006885.3	43	aCa/aTa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16001772	16001772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	225	884	0	ENST00000268712.3:c.2729C>G	p.Pro910Arg	p.P910R	ENST00000268712	NM_006311.3	910	cCc/cGc																																																																														
NF1	0	MSKCC	GRCh37	17	29509524	29509524	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	147	629	2	ENST00000358273.4:c.731-2A>T		p.X244_splice	ENST00000358273	NM_001042492.2	244																																																																															
NF1	0	MSKCC	GRCh37	17	29550561	29550561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	147	663	1	ENST00000358273.4:c.1821G>T	p.Arg607Ser	p.R607S	ENST00000358273	NM_001042492.2	607	agG/agT																																																																														
NF1	0	MSKCC	GRCh37	17	29663795	29663795	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	452	721	0	ENST00000358273.4:c.6290del	p.Ala2097GlufsTer14	p.A2097Efs*14	ENST00000358273	NM_001042492.2	2097	gCa/ga																																																																														
NF1	0	MSKCC	GRCh37	17	29676236	29676236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	319	675	0	ENST00000358273.4:c.7288G>A	p.Glu2430Lys	p.E2430K	ENST00000358273	NM_001042492.2	2430	Gaa/Aaa																																																																														
STAT5B	0	MSKCC	GRCh37	17	40354384	40354384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	405	1638	1	ENST00000293328.3:c.2211G>T	p.Gln737His	p.Q737H	ENST00000293328	NM_012448.3	737	caG/caT																																																																														
INSR	0	MSKCC	GRCh37	19	7117083	7117083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	311	890	0	ENST00000302850.5:c.4133G>C	p.Arg1378Pro	p.R1378P	ENST00000302850	NM_000208.2	1378	cGg/cCg																																																																														
CIC	0	MSKCC	GRCh37	19	42795456	42795456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	161	684	0	ENST00000575354.2:c.2536C>T	p.Pro846Ser	p.P846S	ENST00000575354	NM_015125.3	846	Cct/Tct																																																																														
ASXL2	0	MSKCC	GRCh37	2	25990466	25990466	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	323	624	0	ENST00000435504.4:c.761A>T	p.Glu254Val	p.E254V	ENST00000435504		254	gAg/gTg																																																																														
ALK	0	MSKCC	GRCh37	2	30142907	30142907	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1249	549	1424	0	ENST00000389048.3:c.619del	p.Ala207GlnfsTer42	p.A207Qfs*42	ENST00000389048	NM_004304.4	207	Gca/ca																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251632	212251632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	105	518	0	ENST00000342788.4:c.3427G>A	p.Gly1143Arg	p.G1143R	ENST00000342788	NM_005235.2	1143	Gga/Aga																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530141	212530141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	230	553	0	ENST00000342788.4:c.1778G>A	p.Cys593Tyr	p.C593Y	ENST00000342788	NM_005235.2	593	tGt/tAt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212652850	212652850	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	139	600	0	ENST00000342788.4:c.456C>G	p.Asn152Lys	p.N152K	ENST00000342788	NM_005235.2	152	aaC/aaG																																																																														
PAK7	0	MSKCC	GRCh37	20	9546689	9546689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	109	418	0	ENST00000353224.5:c.1333C>A	p.Pro445Thr	p.P445T	ENST00000353224	NM_177990.2	445	Ccc/Acc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739028	40739029	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	186	840	1	ENST00000373198.4:c.3255_3256delinsAA	p.Arg1086Ser	p.R1086S	ENST00000373198	NM_133170.3	1085	gtCCgc/gtAAgc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743933	40743933	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	174	678	0	ENST00000373198.4:c.3062C>G	p.Pro1021Arg	p.P1021R	ENST00000373198	NM_133170.3	1021	cCa/cGa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41408909	41408909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	163	714	0	ENST00000373198.4:c.517C>A	p.His173Asn	p.H173N	ENST00000373198	NM_133170.3	173	Cat/Aat																																																																														
RTEL1	0	MSKCC	GRCh37	20	62294240	62294240	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	235	988	0	ENST00000508582.2:c.608A>G	p.Glu203Gly	p.E203G	ENST00000508582		203	gAa/gGa																																																																														
PPARG	0	MSKCC	GRCh37	3	12475489	12475489	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	515	994	3	ENST00000287820.6:c.1363G>T	p.Glu455Ter	p.E455*	ENST00000287820	NM_015869.4	455	Gag/Tag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480460	89480460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	130	479	0	ENST00000336596.2:c.2297G>T	p.Gly766Val	p.G766V	ENST00000336596	NM_005233.5	766	gGa/gTa																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665062	138665062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	89	262	0	ENST00000330315.3:c.503G>A	p.Gly168Glu	p.G168E	ENST00000330315	NM_023067.3	168	gGg/gAg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957525	1957525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	331	1022	0	ENST00000382891.5:c.2624G>T	p.Gly875Val	p.G875V	ENST00000382891	NM_133335.3	875	gGg/gTg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127312	55127312	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	404	795	2	ENST00000257290.5:c.100G>T	p.Glu34Ter	p.E34*	ENST00000257290	NM_006206.4	34	Gaa/Taa																																																																														
DROSHA	0	MSKCC	GRCh37	5	31472187	31472187	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	557	1119	0	ENST00000344624.3:c.2224G>C	p.Val742Leu	p.V742L	ENST00000344624		742	Gtt/Ctt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67590996	67590996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	78	269	0	ENST00000274335.5:c.1589A>G	p.Lys530Arg	p.K530R	ENST00000274335		530	aAg/aGg																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225758	26225758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	242	578	1	ENST00000360408.1:c.376C>A	p.Gln126Lys	p.Q126K	ENST00000360408	NM_003532.2	126	Cag/Aag																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778236	27778236	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	142	637	0	ENST00000369163.2:c.385C>G	p.Arg129Gly	p.R129G	ENST00000369163	NM_003536.2	129	Cgt/Ggt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32180948	32180948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	213	794	0	ENST00000375023.3:c.2402G>T	p.Arg801Leu	p.R801L	ENST00000375023	NM_004557.3	801	cGc/cTc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32180997	32180997	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	283	1043	0	ENST00000375023.3:c.2353A>T	p.Arg785Trp	p.R785W	ENST00000375023	NM_004557.3	785	Agg/Tgg																																																																														
FYN	0	MSKCC	GRCh37	6	111995804	111995804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	309	621	1	ENST00000368678.4:c.1294C>T	p.Pro432Ser	p.P432S	ENST00000368678		432	Ccc/Tcc																																																																														
PARK2	0	MSKCC	GRCh37	6	162622209	162622209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	149	512	0	ENST00000366898.1:c.488G>T	p.Arg163Met	p.R163M	ENST00000366898	NM_004562.2	163	aGg/aTg																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540357	23540357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	165	607	1	ENST00000380871.4:c.46G>T	p.Gly16Trp	p.G16W	ENST00000380871	NM_006167.3	16	Ggg/Tgg																																																																														
AGO2	0	MSKCC	GRCh37	8	141572599	141572599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	259	932	1	ENST00000220592.5:c.471G>T	p.Glu157Asp	p.E157D	ENST00000220592	NM_012154.3	157	gaG/gaT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484199	8484199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	330	697	0	ENST00000356435.5:c.3333G>T	p.Lys1111Asn	p.K1111N	ENST00000356435		1111	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057520008		P-0019391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	395	892	0	ENST00000269305.4:c.613T>G	p.Tyr205Asp	p.Y205D	ENST00000269305	NM_001126112.2	205	Tat/Gat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72984797	72984797	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	108	730	0	ENST00000268489.5:c.2787C>G	p.Asn929Lys	p.N929K	ENST00000268489	NM_006885.3	929	aaC/aaG																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244110	41244110	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	553	703	0	ENST00000357654.3:c.3438T>A	p.Cys1146Ter	p.C1146*	ENST00000357654	NM_007294.3	1146	tgT/tgA																																																																														
ERBB4	0	MSKCC	GRCh37	2	212285333	212285333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	439	471	0	ENST00000342788.4:c.2968G>A	p.Asp990Asn	p.D990N	ENST00000342788	NM_005235.2	990	Gat/Aat																																																																														
MDC1	0	MSKCC	GRCh37	6	30671637	30671637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	91	715	0	ENST00000376406.3:c.5323T>C	p.Ser1775Pro	p.S1775P	ENST00000376406	NM_014641.2	1775	Tct/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	221	796	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	337	564	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
E2F3	0	MSKCC	GRCh37	6	20402586	20402586	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	669	666	0	ENST00000346618.3:c.126delC	p.Gly43AlafsTer37	p.G43Afs*37	ENST00000346618	NM_001949.4	41	agC/ag																																																																														
ROS1	0	MSKCC	GRCh37	6	117665383	117665383	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	180	391	0	ENST00000368508.3:c.4364C>G	p.Thr1455Ser	p.T1455S	ENST00000368508	NM_002944.2	1455	aCt/aGt																																																																														
KDM5A	0	MSKCC	GRCh37	12	402013	402013	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1620	227	443	0	ENST00000399788.2:c.4778C>G	p.Ser1593Ter	p.S1593*	ENST00000399788	NM_001042603.1	1593	tCa/tGa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913357	32913357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	168	557	2	ENST00000380152.3:c.4865G>A	p.Arg1622Lys	p.R1622K	ENST00000380152		1622	aGa/aAa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060976	38060977	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	28	402	1	ENST00000250448.2:c.1012_1013delinsTT	p.Ser338Phe	p.S338F	ENST00000250448	NM_004496.3	338	AGt/TTt																																																																														
MALT1	0	MSKCC	GRCh37	18	56376637	56376637	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs149988025		P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	53	568	0	ENST00000348428.3:c.677A>G	p.Lys226Arg	p.K226R	ENST00000348428	NM_006785.3	226	aAg/aGg																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111921758	111921758	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	164	541	0	ENST00000393256.3:c.547A>G	p.Ile183Val	p.I183V	ENST00000393256	NM_006538.4	183	Atc/Gtc																																																																														
APC	0	MSKCC	GRCh37	5	112177545	112177545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	76	413	0	ENST00000257430.4:c.6254G>A	p.Arg2085Lys	p.R2085K	ENST00000257430	NM_000038.5	2085	aGa/aAa																																																																														
HGF	0	MSKCC	GRCh37	7	81372711	81372711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	168	448	0	ENST00000222390.5:c.823G>A	p.Asp275Asn	p.D275N	ENST00000222390	NM_000601.4	275	Gac/Aac																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860842	151860843	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	84	444	0	ENST00000262189.6:c.9819_9820del	p.Ala3274AsnfsTer51	p.A3274Nfs*51	ENST00000262189	NM_170606.2	3273	tgTGca/tgca																																																																														
AGO2	0	MSKCC	GRCh37	8	141567313	141567313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	47	561	0	ENST00000220592.5:c.901G>A	p.Gly301Arg	p.G301R	ENST00000220592	NM_012154.3	301	Ggg/Agg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739635	145739635	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	246	851	0	ENST00000428558.2:c.1816G>T	p.Glu606Ter	p.E606*	ENST00000428558	NM_004260.3	606	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7579317	7579317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	177	610	1	ENST00000269305.4:c.370T>C	p.Cys124Arg	p.C124R	ENST00000269305	NM_001126112.2	124	Tgc/Cgc																																																																														
PAK1	0	MSKCC	GRCh37	11	77085411	77085411	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	180	617	0	ENST00000356341.3:c.440-1G>C		p.X147_splice	ENST00000356341	NM_002576.4	147																																																																															
PIK3C2G	0	MSKCC	GRCh37	12	18716359	18716359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	42	594	0	ENST00000266497.5:c.3706G>C	p.Glu1236Gln	p.E1236Q	ENST00000266497		1236	Gaa/Caa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906804	32906804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	55	851	2	ENST00000380152.3:c.1189C>T	p.Gln397Ter	p.Q397*	ENST00000380152		397	Caa/Taa																																																																														
NUP93	0	MSKCC	GRCh37	16	56862956	56862956	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	136	569	0	ENST00000308159.5:c.862G>C	p.Gly288Arg	p.G288R	ENST00000308159	NM_014669.4	288	Ggg/Cgg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71050209	71050209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	95	382	0	ENST00000318789.4:c.976C>A	p.His326Asn	p.H326N	ENST00000318789	NM_032682.5	326	Cat/Aat																																																																														
SDHA	0	MSKCC	GRCh37	5	251526	251526	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	123	400	0	ENST00000264932.6:c.1737C>G	p.Ile579Met	p.I579M	ENST00000264932	NM_004168.2	579	atC/atG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	137	592	8	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	39	592	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	39	592	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	39	592	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	104	563	1	ENST00000349496.5:c.1161T>A	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaA																																																																														
TP53	0	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0019413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	98	607	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
ALK	0	MSKCC	GRCh37	2	30143345	30143345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	26	884	1	ENST00000389048.3:c.181C>T	p.Pro61Ser	p.P61S	ENST00000389048	NM_004304.4	61	Ccc/Tcc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212488711	212488711	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	48	674	0	ENST00000342788.4:c.2138T>C	p.Leu713Ser	p.L713S	ENST00000342788	NM_005235.2	713	tTg/tCg																																																																														
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	232	323	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	271	745	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	166	524	1				ENST00000310581	NM_198253.2																																																																																
ERCC2	0	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	116	770	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914851	32914851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	30	551	0	ENST00000380152.3:c.6359C>T	p.Ser2120Leu	p.S2120L	ENST00000380152		2120	tCa/tTa																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137524722	137524722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	88	649	0	ENST00000367739.4:c.647C>T	p.Ser216Leu	p.S216L	ENST00000367739	NM_000416.2	216	tCa/tTa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094409	27094409	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	84	593	0	ENST00000324856.7:c.3119del	p.Asn1040IlefsTer19	p.N1040Ifs*19	ENST00000324856	NM_006015.4	1039	acA/ac																																																																														
PGR	0	MSKCC	GRCh37	11	100909918	100909918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	39	553	0	ENST00000325455.5:c.2731G>A	p.Glu911Lys	p.E911K	ENST00000325455	NM_001202474.3	911	Gaa/Aaa																																																																														
MAPK3	0	MSKCC	GRCh37	16	30128222	30128222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	66	634	1	ENST00000263025.4:c.1010C>T	p.Thr337Met	p.T337M	ENST00000263025	NM_002746.2	337	aCg/aTg																																																																														
NF1	0	MSKCC	GRCh37	17	29576114	29576114	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	33	533	0	ENST00000358273.4:c.4087A>C	p.Ser1363Arg	p.S1363R	ENST00000358273	NM_001042492.2	1363	Agt/Cgt																																																																														
NF1	0	MSKCC	GRCh37	17	29684061	29684061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	94	659	0	ENST00000358273.4:c.7822G>A	p.Glu2608Lys	p.E2608K	ENST00000358273	NM_001042492.2	2608	Gaa/Aaa																																																																														
CDK12	0	MSKCC	GRCh37	17	37682206	37682206	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	91	661	0	ENST00000447079.4:c.3397C>T	p.Gln1133Ter	p.Q1133*	ENST00000447079	NM_015083.1	1133	Caa/Taa																																																																														
BARD1	0	MSKCC	GRCh37	2	215674142	215674142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	85	565	0	ENST00000260947.4:c.152C>T	p.Ser51Leu	p.S51L	ENST00000260947	NM_000465.2	51	tCg/tTg																																																																														
IRS1	0	MSKCC	GRCh37	2	227662930	227662930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	138	804	0	ENST00000305123.5:c.525G>T	p.Gln175His	p.Q175H	ENST00000305123	NM_005544.2	175	caG/caT																																																																														
TMPRSS2	7113	MSKCC	GRCh37	21	42870081	42870081	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	42	817	0	ENST00000398585.3:c.91G>C	p.Asp31His	p.D31H	ENST00000398585	NM_001135099.1	31	Gat/Cat																																																																														
TAP1	0	MSKCC	GRCh37	6	32815326	32815326	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	161	967	0	ENST00000354258.4:c.2047A>G	p.Ser683Gly	p.S683G	ENST00000354258	NM_000593.5	683	Agt/Ggt																																																																														
BRAF	0	MSKCC	GRCh37	7	140439629	140439629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	70	601	1	ENST00000288602.6:c.2110A>G	p.Arg704Gly	p.R704G	ENST00000288602	NM_004333.4	704	Aga/Gga																																																																														
RHEB	0	MSKCC	GRCh37	7	151168508	151168508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	90	615	0	ENST00000262187.5:c.352G>A	p.Gly118Arg	p.G118R	ENST00000262187	NM_005614.3	118	Ggg/Agg																																																																														
ABL1	0	MSKCC	GRCh37	9	133759583	133759583	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	123	876	1	ENST00000318560.5:c.1906G>T	p.Glu636Ter	p.E636*	ENST00000318560	NM_005157.4	636	Gaa/Taa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139403482	139403482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	71	1059	0	ENST00000277541.6:c.3011C>G	p.Ser1004Trp	p.S1004W	ENST00000277541	NM_017617.3	1004	tCg/tGg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44919370	44919371	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0019417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	42	257	3	ENST00000377967.4:c.1298_1299delinsTT	p.Ser433Phe	p.S433F	ENST00000377967	NM_021140.2	433	tCC/tTT																																																																														
NTRK1	0	MSKCC	GRCh37	1	156838320	156838320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	91	1150	0	ENST00000524377.1:c.598G>T	p.Val200Leu	p.V200L	ENST00000524377	NM_002529.3	200	Gtg/Ttg																																																																														
IDH2	0	MSKCC	GRCh37	15	90631881	90631881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	71	1096	0	ENST00000330062.3:c.472C>T	p.Pro158Ser	p.P158S	ENST00000330062	NM_002168.2	158	Cca/Tca																																																																														
NF1	0	MSKCC	GRCh37	17	29576103	29576104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	46	834	0	ENST00000358273.4:c.4077dup	p.Gln1360SerfsTer20	p.Q1360Sfs*20	ENST00000358273	NM_001042492.2	1359	cct/ccTt																																																																														
NF1	0	MSKCC	GRCh37	17	29654566	29654566	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	48	458	0	ENST00000358273.4:c.5318del	p.Leu1773GlnfsTer7	p.L1773Qfs*7	ENST00000358273	NM_001042492.2	1773	cTa/ca																																																																														
JAK3	0	MSKCC	GRCh37	19	17945786	17945786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	73	992	0	ENST00000458235.1:c.2074G>T	p.Ala692Ser	p.A692S	ENST00000458235	NM_000215.3	692	Gcc/Tcc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87325629	87325629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	48	689	1	ENST00000277120.3:c.506C>T	p.Pro169Leu	p.P169L	ENST00000277120		169	cCa/cTa																																																																														
RBM10	0	MSKCC	GRCh37	X	47044469	47044469	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	76	1046	1	ENST00000329236.7:c.1732G>T	p.Glu578Ter	p.E578*	ENST00000329236	NM_001204466.1	578	Gaa/Taa																																																																														
NF1	0	MSKCC	GRCh37	17	29528097	29528097	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	86	492	0	ENST00000358273.4:c.1105C>T	p.Gln369Ter	p.Q369*	ENST00000358273	NM_001042492.2	369	Cag/Tag																																																																														
SUZ12	23512	MSKCC	GRCh37	17	30326004	30326005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769517721		P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	91	537	0	ENST00000322652.5:c.2208dup	p.Gln737ThrfsTer20	p.Q737Tfs*20	ENST00000322652	NM_015355.2	734	-/A																																																																														
CDK12	0	MSKCC	GRCh37	17	37627487	37627487	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	126	800	0	ENST00000447079.4:c.1402C>G	p.Leu468Val	p.L468V	ENST00000447079	NM_015083.1	468	Cta/Gta																																																																														
POLD1	0	MSKCC	GRCh37	19	50921197	50921197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	114	793	0	ENST00000440232.2:c.3317C>A	p.Ala1106Asp	p.A1106D	ENST00000440232	NM_002691.3	1106	gCc/gAc																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778050	27778050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	51	367	0	ENST00000369163.2:c.199C>T	p.Pro67Ser	p.P67S	ENST00000369163	NM_003536.2	67	Cct/Tct																																																																														
EGFR	0	MSKCC	GRCh37	7	55268993	55268993	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1273	251	851	0	ENST00000275493.2:c.3059A>G	p.Gln1020Arg	p.Q1020R	ENST00000275493	NM_005228.3	1020	cAg/cGg																																																																														
RAD21	0	MSKCC	GRCh37	8	117874171	117874171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	203	526	0	ENST00000297338.2:c.283G>C	p.Asp95His	p.D95H	ENST00000297338	NM_006265.2	95	Gac/Cac																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964356	70964357	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0019420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	211	450	0	ENST00000276594.2:c.1671_1672del	p.Asp557GlufsTer12	p.D557Efs*12	ENST00000276594	NM_024504.3	557	gaTCaa/gaaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8460516	8460516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	354	789	0	ENST00000356435.5:c.3770C>T	p.Pro1257Leu	p.P1257L	ENST00000356435		1257	cCg/cTg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	119	527	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	382	838	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
RAF1	0	MSKCC	GRCh37	3	12633229	12633229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	113	720	0	ENST00000251849.4:c.1171A>T	p.Arg391Trp	p.R391W	ENST00000251849	NM_002880.3	391	Agg/Tgg																																																																														
SESN2	0	MSKCC	GRCh37	1	28595728	28595728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1325	71	990	1	ENST00000253063.3:c.125G>A	p.Arg42Gln	p.R42Q	ENST00000253063	NM_031459.4	42	cGa/cAa																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073980	8073980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	40	476	0	ENST00000377482.5:c.679G>A	p.Asp227Asn	p.D227N	ENST00000377482	NM_018948.3	227	Gac/Aac																																																																														
SDHB	0	MSKCC	GRCh37	1	17359555	17359555	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	218	690	0	ENST00000375499.3:c.286G>T	p.Gly96Cys	p.G96C	ENST00000375499	NM_003000.2	96	Ggc/Tgc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741665	17741665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	59	746	1	ENST00000250003.3:c.336G>T	p.Lys112Asn	p.K112N	ENST00000250003	NM_002478.4	112	aaG/aaT																																																																														
INPPL1	0	MSKCC	GRCh37	11	71943938	71943938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	521	985	2	ENST00000298229.2:c.1871G>T	p.Ser624Ile	p.S624I	ENST00000298229	NM_001567.3	624	aGc/aTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46230669	46230669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	69	553	0	ENST00000334344.6:c.918G>T	p.Leu306Phe	p.L306F	ENST00000334344	NM_152641.2	306	ttG/ttT																																																																														
ARID2	0	MSKCC	GRCh37	12	46246012	46246012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	97	514	1	ENST00000334344.6:c.4106G>T	p.Gly1369Val	p.G1369V	ENST00000334344	NM_152641.2	1369	gGt/gTt																																																																														
PTPN11	0	MSKCC	GRCh37	12	112893865	112893865	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	50	768	0	ENST00000351677.2:c.754G>A	p.Glu252Lys	p.E252K	ENST00000351677	NM_002834.3	252	Gag/Aag																																																																														
LATS2	0	MSKCC	GRCh37	13	21549410	21549410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	196	494	0	ENST00000382592.4:c.2866G>T	p.Asp956Tyr	p.D956Y	ENST00000382592	NM_014572.2	956	Gac/Tac																																																																														
NTRK3	0	MSKCC	GRCh37	15	88483882	88483882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	101	925	1	ENST00000360948.2:c.1688C>A	p.Thr563Asn	p.T563N	ENST00000360948	NM_001012338.2	563	aCc/aAc																																																																														
PALB2	0	MSKCC	GRCh37	16	23641320	23641320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	114	901	0	ENST00000261584.4:c.2155C>T	p.Pro719Ser	p.P719S	ENST00000261584	NM_024675.3	719	Cct/Tct																																																																														
CTCF	0	MSKCC	GRCh37	16	67671683	67671683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	87	806	0	ENST00000264010.4:c.2092G>A	p.Glu698Lys	p.E698K	ENST00000264010	NM_006565.3	698	Gag/Aag																																																																														
FLCN	0	MSKCC	GRCh37	17	17117121	17117121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	69	755	1	ENST00000285071.4:c.1588G>A	p.Glu530Lys	p.E530K	ENST00000285071	NM_144997.5	530	Gag/Aag																																																																														
CDK12	0	MSKCC	GRCh37	17	37687037	37687037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	79	746	2	ENST00000447079.4:c.3941G>T	p.Gly1314Val	p.G1314V	ENST00000447079	NM_015083.1	1314	gGc/gTc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39609292	39609292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	45	419	0	ENST00000262039.4:c.1594G>C	p.Asp532His	p.D532H	ENST00000262039	NM_002647.2	532	Gat/Cat																																																																														
BABAM1	0	MSKCC	GRCh37	19	17379676	17379676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	193	707	1	ENST00000359435.4:c.61G>A	p.Ala21Thr	p.A21T	ENST00000359435	NM_001033549.1	21	Gca/Aca																																																																														
ERCC2	0	MSKCC	GRCh37	19	45856065	45856065	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	150	879	0	ENST00000391945.4:c.1841A>C	p.Tyr614Ser	p.Y614S	ENST00000391945	NM_000400.3	614	tAc/tCc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212578280	212578280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	114	819	0	ENST00000342788.4:c.977G>T	p.Cys326Phe	p.C326F	ENST00000342788	NM_005235.2	326	tGc/tTc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31372576	31372576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	71	741	0	ENST00000328111.2:c.217G>A	p.Asp73Asn	p.D73N	ENST00000328111	NM_006892.3	73	Gat/Aat																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42861469	42861469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	75	729	2	ENST00000398585.3:c.401G>A	p.Gly134Glu	p.G134E	ENST00000398585	NM_001135099.1	134	gGa/gAa																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41748119	41748119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	65	222	0	ENST00000226382.2:c.650G>T	p.Gly217Val	p.G217V	ENST00000226382	NM_003924.3	217	gGg/gTg																																																																														
KIT	0	MSKCC	GRCh37	4	55599347	55599347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	106	598	0	ENST00000288135.5:c.2473G>T	p.Val825Phe	p.V825F	ENST00000288135	NM_000222.2	825	Gtt/Ttt																																																																														
KDR	0	MSKCC	GRCh37	4	55961058	55961058	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199904772		P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	142	1033	3	ENST00000263923.4:c.2882G>A	p.Arg961Gln	p.R961Q	ENST00000263923	NM_002253.2	961	cGg/cAg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67576465	67576465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	146	637	1	ENST00000274335.5:c.744C>A	p.Phe248Leu	p.F248L	ENST00000274335		248	ttC/ttA																																																																														
FLT4	0	MSKCC	GRCh37	5	180048237	180048237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	403	1217	3	ENST00000261937.6:c.2036G>A	p.Arg679Gln	p.R679Q	ENST00000261937	NM_182925.4	679	cGg/cAg																																																																														
VEGFA	0	MSKCC	GRCh37	6	43742102	43742102	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	143	985	0	ENST00000523873.1:c.91G>C	p.Glu31Gln	p.E31Q	ENST00000523873		31	Gaa/Caa																																																																														
INHBA	0	MSKCC	GRCh37	7	41729399	41729399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	189	747	0	ENST00000242208.4:c.1130G>C	p.Arg377Pro	p.R377P	ENST00000242208	NM_002192.2	377	cGc/cCc																																																																														
HGF	0	MSKCC	GRCh37	7	81358967	81358967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	122	699	0	ENST00000222390.5:c.994C>A	p.Gln332Lys	p.Q332K	ENST00000222390	NM_000601.4	332	Cag/Aag																																																																														
LYN	0	MSKCC	GRCh37	8	56863249	56863249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	71	842	0	ENST00000519728.1:c.393C>G	p.Phe131Leu	p.F131L	ENST00000519728	NM_002350.3	131	ttC/ttG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	68	823	5	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	86	716	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699447	117699454	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAGTTT	GAAAGTTT	-			P-0019427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	48	570	0	ENST00000369458.3:c.187_194del	p.Lys63Ter	p.K63*	ENST00000369458	NM_024626.3	63	AAACTTTCt/t																																																																														
CHEK1	0	MSKCC	GRCh37	11	125497572	125497572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	51	493	0	ENST00000428830.2:c.136G>A	p.Val46Ile	p.V46I	ENST00000428830	NM_001114121.2	46	Gta/Ata																																																																														
MYC	0	MSKCC	GRCh37	8	128750560	128750560	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	92	768	1	ENST00000377970.2:c.97T>A	p.Ser33Thr	p.S33T	ENST00000377970	NM_002467.4	33	Tcg/Acg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	132	695	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	92	676	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	85	681	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	186	839	1	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
SETD2	0	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	44	586	4	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																														
JAK1	0	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	35	418	0	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	42	1014	2	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																														
NF1	0	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	186	922	7	ENST00000358273.4:c.2033delC	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																																																														
RPTOR	0	MSKCC	GRCh37	17	78919545	78919545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	38	533	0	ENST00000306801.3:c.3104C>T	p.Thr1035Met	p.T1035M	ENST00000306801	NM_020761.2	1035	aCg/aTg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	167	736	6	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	194	618	24	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
FLT4	0	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	159	809	8	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	45	729	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
CTLA4	0	MSKCC	GRCh37	2	204736165	204736166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	104	543	0	ENST00000302823.3:c.529dupT	p.Tyr177LeufsTer2	p.Y177Lfs*2	ENST00000302823	NM_005214.4	174	-/T																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169934	32169934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	329	862	0	ENST00000375023.3:c.3674G>A	p.Arg1225Gln	p.R1225Q	ENST00000375023	NM_004557.3	1225	cGg/cAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106917	27106917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	63	501	0	ENST00000324856.7:c.6532del	p.Asp2178ThrfsTer22	p.D2178Tfs*22	ENST00000324856	NM_006015.4	2176	caG/ca																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911172	29911172	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	197	446	0	ENST00000376809.5:c.471G>A	p.Trp157Ter	p.W157*	ENST00000376809	NM_002116.7	157	tgG/tgA																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225657	26225657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202067024		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	261	508	0	ENST00000360408.1:c.275C>T	p.Ala92Val	p.A92V	ENST00000360408	NM_003532.2	92	gCg/gTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	59	538	0	ENST00000262367.5:c.3250dupA	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38275420	38275420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	231	984	1	ENST00000425967.3:c.1613G>A	p.Arg538His	p.R538H	ENST00000425967	NM_001174067.1	538	cGt/cAt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	121	934	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
FUBP1	0	MSKCC	GRCh37	1	78444685	78444685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	148	496	2	ENST00000370768.2:c.4G>A	p.Ala2Thr	p.A2T	ENST00000370768	NM_003902.3	2	Gca/Aca																																																																														
SDHC	0	MSKCC	GRCh37	1	161326623	161326623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	147	869	0	ENST00000367975.2:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000367975	NM_003001.3	133	cGa/cAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692803	89692803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	82	488	0	ENST00000371953.3:c.287C>A	p.Pro96Gln	p.P96Q	ENST00000371953	NM_000314.4	96	cCa/cAa																																																																														
SUFU	0	MSKCC	GRCh37	10	104353757	104353757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	124	637	0	ENST00000369902.3:c.691G>A	p.Gly231Ser	p.G231S	ENST00000369902	NM_016169.3	231	Ggc/Agc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118365112	118365112	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	108	611	1	ENST00000534358.1:c.5288G>A	p.Arg1763Gln	p.R1763Q	ENST00000534358	NM_005933.3	1763	cGg/cAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425784	49425784	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	135	555	0	ENST00000301067.7:c.12704A>G	p.Gln4235Arg	p.Q4235R	ENST00000301067	NM_003482.3	4235	cAg/cGg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446166	49446166	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	88	798	0	ENST00000301067.7:c.1300del	p.Leu434Ter	p.L434*	ENST00000301067	NM_003482.3	434	Cta/ta																																																																														
FLT3	0	MSKCC	GRCh37	13	28599048	28599048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	56	713	0	ENST00000241453.7:c.2240C>T	p.Pro747Leu	p.P747L	ENST00000241453	NM_004119.2	747	cCg/cTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110436792	110436792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	52	1093	2	ENST00000375856.3:c.1609G>A	p.Gly537Ser	p.G537S	ENST00000375856	NM_003749.2	537	Ggt/Agt																																																																														
SLX4	0	MSKCC	GRCh37	16	3639156	3639156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	48	885	3	ENST00000294008.3:c.4483G>A	p.Ala1495Thr	p.A1495T	ENST00000294008	NM_032444.2	1495	Gcg/Acg																																																																														
SLX4	0	MSKCC	GRCh37	16	3639540	3639540	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17136464		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	88	920	2	ENST00000294008.3:c.4099G>A	p.Ala1367Thr	p.A1367T	ENST00000294008	NM_032444.2	1367	Gcc/Acc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16004813	16004813	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	182	737	2	ENST00000268712.3:c.2441del	p.Pro814HisfsTer13	p.P814Hfs*13	ENST00000268712	NM_006311.3	814	cCa/ca																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245848	41245848	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	84	756	0	ENST00000357654.3:c.1700del	p.Asn567IlefsTer5	p.N567Ifs*5	ENST00000357654	NM_007294.3	567	aAt/at																																																																														
CARM1	0	MSKCC	GRCh37	19	10982557	10982557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	27	285	0	ENST00000327064.4:c.179T>C	p.Val60Ala	p.V60A	ENST00000327064	NM_199141.1	60	gTg/gCg																																																																														
CIC	0	MSKCC	GRCh37	19	42794440	42794440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	124	1085	3	ENST00000575354.2:c.1520G>A	p.Arg507His	p.R507H	ENST00000575354	NM_015125.3	507	cGc/cAc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46609156	46609156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	159	922	4	ENST00000263734.3:c.2215C>T	p.Arg739Trp	p.R739W	ENST00000263734	NM_001430.4	739	Cgg/Tgg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212587222	212587222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	108	647	0	ENST00000342788.4:c.779C>T	p.Thr260Ile	p.T260I	ENST00000342788	NM_005235.2	260	aCt/aTt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212652834	212652834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	81	636	0	ENST00000342788.4:c.472G>A	p.Ala158Thr	p.A158T	ENST00000342788	NM_005235.2	158	Gca/Aca																																																																														
PDCD1	0	MSKCC	GRCh37	2	242800938	242800938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	116	873	2	ENST00000334409.5:c.53G>A	p.Gly18Asp	p.G18D	ENST00000334409	NM_005018.2	18	gGc/gAc																																																																														
EP300	0	MSKCC	GRCh37	22	41546066	41546066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	97	799	0	ENST00000263253.7:c.2681C>T	p.Pro894Leu	p.P894L	ENST00000263253	NM_001429.3	894	cCc/cTc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38946623	38946623	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	31	568	0	ENST00000357387.3:c.4346del	p.Asn1449ThrfsTer28	p.N1449Tfs*28	ENST00000357387	NM_152756.3	1449	aAc/ac																																																																														
MSH3	0	MSKCC	GRCh37	5	80083386	80083386	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G	rs150446804		P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	56	703	0	ENST00000265081.6:c.2438A>G	p.Lys813Arg	p.K813R	ENST00000265081	NM_002439.4	813	aAa/aGa																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27840020	27840020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	27	346	0	ENST00000328488.2:c.74C>T	p.Ala25Val	p.A25V	ENST00000328488	NM_003533.2	25	gCg/gTg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509177	106509177	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	75	642	2	ENST00000359195.3:c.1171C>T	p.Gln391Ter	p.Q391*	ENST00000359195	NM_002649.2	391	Caa/Taa																																																																														
SMO	0	MSKCC	GRCh37	7	128845240	128845240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	83	488	0	ENST00000249373.3:c.734C>T	p.Thr245Met	p.T245M	ENST00000249373	NM_005631.4	245	aCg/aTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21994329	21994329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	118	546	1	ENST00000361570.3:c.125T>C	p.Met42Thr	p.M42T	ENST00000361570	NM_058195.3	42	aTg/aCg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21994329	21994329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	118	546	1	ENST00000361570.3:c.125T>C	p.Met42Thr	p.M42T	ENST00000361570	NM_058195.3	42	aTg/aCg																																																																														
ABL1	0	MSKCC	GRCh37	9	133760288	133760288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	99	566	0	ENST00000318560.5:c.2611G>A	p.Glu871Lys	p.E871K	ENST00000318560	NM_005157.4	871	Gag/Aag																																																																														
KDM5C	0	MSKCC	GRCh37	X	53225198	53225198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	72	884	1	ENST00000375401.3:c.3020G>A	p.Arg1007His	p.R1007H	ENST00000375401	NM_004187.3	1007	cGt/cAt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53244010	53244010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	169	784	1	ENST00000375401.3:c.983G>A	p.Arg328Gln	p.R328Q	ENST00000375401	NM_004187.3	328	cGg/cAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76937992	76937992	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	50	613	0	ENST00000373344.5:c.2756A>C	p.Asp919Ala	p.D919A	ENST00000373344	NM_000489.3	919	gAt/gCt																																																																														
ATRX	0	MSKCC	GRCh37	X	76938233	76938233	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	150	754	0	ENST00000373344.5:c.2515A>G	p.Lys839Glu	p.K839E	ENST00000373344	NM_000489.3	839	Aaa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	70	583	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
BRCA2	0	MSKCC	GRCh37	13	32945219	32945219	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	47	673	0	ENST00000380152.3:c.8614G>T	p.Glu2872Ter	p.E2872*	ENST00000380152		2872	Gaa/Taa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914039	32914040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	59	639	0	ENST00000380152.3:c.5551dup	p.Ile1851AsnfsTer7	p.I1851Nfs*7	ENST00000380152		1849	-/A																																																																														
PRKD1	0	MSKCC	GRCh37	14	30108079	30108079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	55	682	0	ENST00000331968.5:c.728G>T	p.Arg243Leu	p.R243L	ENST00000331968	NM_002742.2	243	cGa/cTa																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43771511	43771602	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTAAAAATGTTTTCATCTGGTAAAATGACATTAGTATAACCCTACAGCAAAACTCGTAAATCCTTTTTAGAAAGTTCGGCTTACCTTGCAGG	CTAAAAATGTTTTCATCTGGTAAAATGACATTAGTATAACCCTACAGCAAAACTCGTAAATCCTTTTTAGAAAGTTCGGCTTACCTTGCAGG	TTAATTTTAAAA			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	32	586	3	ENST00000382044.4:c.781_788+84delinsTTTTAAAATTAA		p.X261_splice	ENST00000382044	NM_001141980.1	261																																																																															
SMAD4	0	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	21	461	0	ENST00000342988.3:c.1487G>C	p.Arg496Pro	p.R496P	ENST00000342988	NM_005359.5	496	cGt/cCt																																																																														
ACVR1	0	MSKCC	GRCh37	2	158634668	158634668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	34	387	0	ENST00000263640.3:c.518C>T	p.Thr173Ile	p.T173I	ENST00000263640	NM_001105.4	173	aCc/aTc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44918347	44918348	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	28	270	0	ENST00000377967.4:c.974+1dup		p.-324fs	ENST00000377967	NM_021140.2	324	-/G																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223529	53223604	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCGCCCTCGGGCAGCCGCACAGGCAGTCTCTGCAGGGCTACCAGCAGTGCCAGGATGGTCTCCAGGCGCGGGC	GCCTCGCCCTCGGGCAGCCGCACAGGCAGTCTCTGCAGGGCTACCAGCAGTGCCAGGATGGTCTCCAGGCGCGGGC	-			P-0019429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	39	235	0	ENST00000375401.3:c.3755_3830del	p.Arg1252ProfsTer25	p.R1252Pfs*25	ENST00000375401	NM_004187.3	1252	cGCCCGCGCCTGGAGACCATCCTGGCACTGCTGGTAGCCCTGCAGAGACTGCCTGTGCGGCTGCCCGAGGGCGAGGCc/cc																																																																														
BAP1	0	MSKCC	GRCh37	3	52436624	52436624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	323	856	0	ENST00000460680.1:c.2050C>T	p.Gln684Ter	p.Q684*	ENST00000460680	NM_004656.3	684	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578471	7578471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	423	938	0	ENST00000269305.4:c.459delC	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	153	ccC/cc																																																																														
RB1	0	MSKCC	GRCh37	13	49027172	49027178	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGACC	AAGGACC	-			P-0019430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	218	776	0	ENST00000267163.4:c.1741_1747del	p.Gly581LeufsTer28	p.G581Lfs*28	ENST00000267163	NM_000321.2	580	gAAGGACCa/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	50	753	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0019433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	43	608	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
IGF2	0	MSKCC	GRCh37	11	2154449	2154449	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	19	776	0	ENST00000434045.2:c.479A>G	p.Asn160Ser	p.N160S	ENST00000434045	NM_001127598.1	160	aAc/aGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578536	7578537	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTTGAGGGCAA			P-0019433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	31	1216	0	ENST00000269305.4:c.393_394insTTGCCCTCAAC	p.Lys132LeufsTer42	p.K132Lfs*42	ENST00000269305	NM_001126112.2	131	-/TTGCCCTCAAC																																																																														
DOT1L	0	MSKCC	GRCh37	19	2213618	2213619	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	66	965	0	ENST00000398665.3:c.1641dup	p.Gln548SerfsTer6	p.Q548Sfs*6	ENST00000398665	NM_032482.2	546	-/T																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	61	634	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
EZH2	0	MSKCC	GRCh37	7	148506428	148506428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	77	667	1	ENST00000320356.2:c.2084C>T	p.Ser695Leu	p.S695L	ENST00000320356	NM_004456.4	695	tCg/tTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16203049	16203049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	69	665	0	ENST00000375759.3:c.757C>T	p.Gln253Ter	p.Q253*	ENST00000375759	NM_015001.2	253	Cag/Tag																																																																														
FLT1	0	MSKCC	GRCh37	13	28919638	28919638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	69	1034	1	ENST00000282397.4:c.2299G>T	p.Val767Leu	p.V767L	ENST00000282397	NM_002019.4	767	Gtg/Ttg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943794	9943794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	39	565	0	ENST00000330684.3:c.1147C>A	p.Leu383Met	p.L383M	ENST00000330684	NM_001134407.1	383	Ctg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7577098	7577098	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	73	1033	0	ENST00000269305.4:c.840A>C	p.Arg280Ser	p.R280S	ENST00000269305	NM_001126112.2	280	agA/agC																																																																														
NF1	0	MSKCC	GRCh37	17	29553668	29553669	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0019436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	47	830	1	ENST00000358273.4:c.2217_2218delinsTT	p.Met739_Glu740delinsIleTer	p.M739_E740delinsI*	ENST00000358273	NM_001042492.2	739	atGGag/atTTag																																																																														
NF1	0	MSKCC	GRCh37	17	29556281	29556281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	30	718	0	ENST00000358273.4:c.2648C>A	p.Ser883Ter	p.S883*	ENST00000358273	NM_001042492.2	883	tCa/tAa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67569823	67569823	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	22	455	0	ENST00000274335.5:c.484C>T	p.Arg162Ter	p.R162*	ENST00000274335		162	Cga/Tga																																																																														
CRLF2	0	MSKCC	GRCh37	X	1314907	1314907	+	downstream_gene_variant	3'Flank	SNP	A	A	G			P-0019436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	35	737	0				ENST00000381566																																																																																	
KDM5C	0	MSKCC	GRCh37	X	53239733	53239733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	55	837	0	ENST00000375401.3:c.1609G>T	p.Val537Leu	p.V537L	ENST00000375401	NM_004187.3	537	Gtg/Ttg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	412	766	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	65	715	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31369182	31369182	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	117	632	0	ENST00000328111.2:c.166T>C	p.Ser56Pro	p.S56P	ENST00000328111	NM_006892.3	56	Tcc/Ccc																																																																														
NPM1	0	MSKCC	GRCh37	5	170817107	170817107	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	17	572	0	ENST00000296930.5:c.111A>T	p.Glu37Asp	p.E37D	ENST00000296930	NM_002520.6	37	gaA/gaT																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981515	70981515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	63	1198	0	ENST00000276594.2:c.581G>A	p.Arg194Gln	p.R194Q	ENST00000276594	NM_024504.3	194	cGg/cAg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0019441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	458	795	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	128	549	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RNF43	0	MSKCC	GRCh37	17	56435155	56435155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	320	654	1	ENST00000407977.2:c.1982C>T	p.Ser661Phe	p.S661F	ENST00000407977		661	tCc/tTc																																																																														
PPP6C	0	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	114	409	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	182	298	1				ENST00000310581	NM_198253.2																																																																																
KDR	0	MSKCC	GRCh37	4	55964947	55964947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	163	478	2	ENST00000263923.4:c.2290G>A	p.Glu764Lys	p.E764K	ENST00000263923	NM_002253.2	764	Gaa/Aaa																																																																														
STAT3	0	MSKCC	GRCh37	17	40477072	40477072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	163	501	0	ENST00000264657.5:c.1373C>T	p.Ser458Phe	p.S458F	ENST00000264657	NM_139276.2	458	tCc/tTc																																																																														
PALB2	0	MSKCC	GRCh37	16	23649173	23649173	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	36	477	0	ENST00000261584.4:c.209C>T	p.Ser70Leu	p.S70L	ENST00000261584	NM_024675.3	70	tCa/tTa																																																																														
RARA	0	MSKCC	GRCh37	17	38511593	38511594	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	242	764	4	ENST00000254066.5:c.1091_1092delinsAA	p.Arg364Gln	p.R364Q	ENST00000254066	NM_000964.3	364	cGG/cAA																																																																														
CARM1	0	MSKCC	GRCh37	19	11024625	11024625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	278	640	1	ENST00000327064.4:c.742C>T	p.Pro248Ser	p.P248S	ENST00000327064	NM_199141.1	248	Ccc/Tcc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42852443	42852443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139092674		P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	261	626	0	ENST00000398585.3:c.643G>A	p.Glu215Lys	p.E215K	ENST00000398585	NM_001135099.1	215	Gag/Aag																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713361	30713361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	115	431	0	ENST00000359013.4:c.761C>T	p.Ser254Phe	p.S254F	ENST00000359013	NM_001024847.2	254	tCc/tTc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38944636	38944636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	59	498	0	ENST00000357387.3:c.4825C>G	p.Arg1609Gly	p.R1609G	ENST00000357387	NM_152756.3	1609	Cgt/Ggt																																																																														
APC	0	MSKCC	GRCh37	5	112177341	112177341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	95	360	0	ENST00000257430.4:c.6050C>T	p.Thr2017Ile	p.T2017I	ENST00000257430	NM_000038.5	2017	aCc/aTc																																																																														
MGA	0	MSKCC	GRCh37	15	42042511	42042512	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	A			P-0019443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	115	524	0	ENST00000219905.7:c.6706_6707delinsA	p.Val2236IlefsTer2	p.V2236Ifs*2	ENST00000219905	NM_001164273.1	2236	GTt/At																																																																														
MTOR	0	MSKCC	GRCh37	1	11298106	11298106	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	47	529	0	ENST00000361445.4:c.2003-1G>C		p.X668_splice	ENST00000361445	NM_004958.3	668																																																																															
NOTCH2	0	MSKCC	GRCh37	1	120458258	120458258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	49	749	0	ENST00000256646.2:c.7087G>T	p.Gly2363Trp	p.G2363W	ENST00000256646	NM_024408.3	2363	Ggg/Tgg																																																																														
FH	0	MSKCC	GRCh37	1	241680489	241680489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	85	560	0	ENST00000366560.3:c.260G>T	p.Arg87Leu	p.R87L	ENST00000366560	NM_000143.3	87	cGc/cTc																																																																														
GATA3	0	MSKCC	GRCh37	10	8097641	8097641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	19	243	0	ENST00000346208.3:c.23C>A	p.Pro8Gln	p.P8Q	ENST00000346208		8	cCg/cAg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18716309	18716309	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	23	429	0	ENST00000266497.5:c.3658-2A>T		p.X1220_splice	ENST00000266497		1220																																																																															
KRAS	0	MSKCC	GRCh37	12	25380229	25380229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	57	634	0	ENST00000256078.4:c.229G>A	p.Gly77Ser	p.G77S	ENST00000256078	NM_033360.2	77	Ggc/Agc																																																																														
ARID2	0	MSKCC	GRCh37	12	46231176	46231176	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	30	488	0	ENST00000334344.6:c.1096A>T	p.Arg366Trp	p.R366W	ENST00000334344	NM_152641.2	366	Agg/Tgg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244661	46244661	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	152	731	0	ENST00000334344.6:c.2755C>T	p.Gln919Ter	p.Q919*	ENST00000334344	NM_152641.2	919	Cag/Tag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481938	56481938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	89	809	1	ENST00000267101.3:c.866G>A	p.Ser289Asn	p.S289N	ENST00000267101	NM_001982.3	289	aGc/aAc																																																																														
RB1	0	MSKCC	GRCh37	13	49039365	49039365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	39	969	1	ENST00000267163.4:c.2350C>T	p.His784Tyr	p.H784Y	ENST00000267163	NM_000321.2	784	Cac/Tac																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281476	49281476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	96	670	1	ENST00000282018.3:c.523G>T	p.Asp175Tyr	p.D175Y	ENST00000282018	NM_020377.2	175	Gac/Tac																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281735	49281735	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	53	959	0	ENST00000282018.3:c.782T>A	p.Leu261Gln	p.L261Q	ENST00000282018	NM_020377.2	261	cTg/cAg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99434677	99434677	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	133	853	1	ENST00000268035.6:c.764A>T	p.Tyr255Phe	p.Y255F	ENST00000268035	NM_000875.3	255	tAc/tTc																																																																														
TSC2	0	MSKCC	GRCh37	16	2134476	2134476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	104	1082	0	ENST00000219476.3:c.4253C>T	p.Ser1418Leu	p.S1418L	ENST00000219476	NM_000548.3	1418	tCa/tTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9892140	9892140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	52	650	0	ENST00000330684.3:c.2350G>T	p.Gly784Cys	p.G784C	ENST00000330684	NM_001134407.1	784	Ggt/Tgt																																																																														
CDH1	0	MSKCC	GRCh37	16	68862127	68862127	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	110	698	0	ENST00000261769.5:c.2215G>C	p.Glu739Gln	p.E739Q	ENST00000261769	NM_004360.3	739	Gag/Cag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992271	72992271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1280	89	1040	3	ENST00000268489.5:c.1774G>T	p.Asp592Tyr	p.D592Y	ENST00000268489	NM_006885.3	592	Gac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	193	898	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15938084	15938084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	27	233	0	ENST00000268712.3:c.7130C>T	p.Ser2377Leu	p.S2377L	ENST00000268712	NM_006311.3	2377	tCa/tTa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15964961	15964961	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	38	725	2	ENST00000268712.3:c.5635C>T	p.Gln1879Ter	p.Q1879*	ENST00000268712	NM_006311.3	1879	Cag/Tag																																																																														
SOX9	0	MSKCC	GRCh37	17	70117581	70117581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	69	819	1	ENST00000245479.2:c.49G>T	p.Gly17Cys	p.G17C	ENST00000245479	NM_000346.3	17	Ggc/Tgc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602864	10602864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	508	1169	3	ENST00000171111.5:c.714C>A	p.Asn238Lys	p.N238K	ENST00000171111	NM_203500.1	238	aaC/aaA																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276741	15276741	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	77	877	0	ENST00000263388.2:c.5524G>C	p.Ala1842Pro	p.A1842P	ENST00000263388	NM_000435.2	1842	Gct/Cct																																																																														
XPO1	0	MSKCC	GRCh37	2	61717879	61717879	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	34	841	0	ENST00000401558.2:c.1920G>C	p.Met640Ile	p.M640I	ENST00000401558	NM_003400.3	640	atG/atC																																																																														
SF3B1	0	MSKCC	GRCh37	2	198288654	198288654	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	49	797	0	ENST00000335508.6:c.73C>G	p.Leu25Val	p.L25V	ENST00000335508	NM_012433.2	25	Ctt/Gtt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251707	212251707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	63	433	0	ENST00000342788.4:c.3352C>T	p.His1118Tyr	p.H1118Y	ENST00000342788	NM_005235.2	1118	Cat/Tat																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743914	40743914	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	107	667	0	ENST00000373198.4:c.3081C>G	p.Tyr1027Ter	p.Y1027*	ENST00000373198	NM_133170.3	1027	taC/taG																																																																														
TP63	0	MSKCC	GRCh37	3	189608630	189608630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	49	718	0	ENST00000264731.3:c.1705G>A	p.Gly569Arg	p.G569R	ENST00000264731	NM_003722.4	569	Ggg/Agg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807310	1807310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	55	819	2	ENST00000260795.2:c.1559C>T	p.Ser520Leu	p.S520L	ENST00000260795		520	tCg/tTg																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41750485	41750485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	104	629	1	ENST00000226382.2:c.143G>A	p.Arg48Lys	p.R48K	ENST00000226382	NM_003924.3	48	aGg/aAg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55144632	55144632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	93	618	2	ENST00000257290.5:c.2106G>T	p.Lys702Asn	p.K702N	ENST00000257290	NM_006206.4	702	aaG/aaT																																																																														
RICTOR	0	MSKCC	GRCh37	5	38972022	38972022	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	24	532	0	ENST00000357387.3:c.929A>T	p.Gln310Leu	p.Q310L	ENST00000357387	NM_152756.3	310	cAg/cTg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591054	67591054	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	55	519	0	ENST00000274335.5:c.1647del	p.Lys550ArgfsTer14	p.K550Rfs*14	ENST00000274335		549	ttG/tt																																																																														
NSD1	0	MSKCC	GRCh37	5	176562657	176562657	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	61	780	0	ENST00000439151.2:c.553G>C	p.Glu185Gln	p.E185Q	ENST00000439151	NM_022455.4	185	Gag/Cag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151947968	151947968	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	83	734	0	ENST00000262189.6:c.1705C>T	p.Gln569Ter	p.Q569*	ENST00000262189	NM_170606.2	569	Cag/Tag																																																																														
FGFR1	0	MSKCC	GRCh37	8	38279365	38279365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	95	1013	1	ENST00000425967.3:c.1124G>T	p.Gly375Val	p.G375V	ENST00000425967	NM_001174067.1	375	gGt/gTt																																																																														
LYN	0	MSKCC	GRCh37	8	56860200	56860200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	98	730	0	ENST00000519728.1:c.202G>A	p.Val68Met	p.V68M	ENST00000519728	NM_002350.3	68	Gtg/Atg																																																																														
AGO2	0	MSKCC	GRCh37	8	141568583	141568583	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	111	656	1	ENST00000220592.5:c.878+1G>A		p.X293_splice	ENST00000220592	NM_012154.3	293																																																																															
PTPRD	0	MSKCC	GRCh37	9	8389308	8389308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	100	830	0	ENST00000356435.5:c.4310G>T	p.Gly1437Val	p.G1437V	ENST00000356435		1437	gGg/gTg																																																																														
KLF4	0	MSKCC	GRCh37	9	110250337	110250337	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	218	958	1	ENST00000374672.4:c.338T>A	p.Leu113Gln	p.L113Q	ENST00000374672	NM_004235.4	113	cTg/cAg																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15822269	15822269	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	46	365	0	ENST00000307771.7:c.348G>C	p.Arg116Ser	p.R116S	ENST00000307771	NM_005089.3	116	agG/agC																																																																														
AR	0	MSKCC	GRCh37	X	66942750	66942750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	120	449	0	ENST00000374690.3:c.2531C>A	p.Ala844Glu	p.A844E	ENST00000374690	NM_000044.3	844	gCa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	49	295	0				ENST00000310581	NM_198253.2																																																																																
ETV6	0	MSKCC	GRCh37	12	11992224	11992224	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	65	444	1	ENST00000396373.4:c.314G>C	p.Arg105Pro	p.R105P	ENST00000396373	NM_001987.4	105	cGa/cCa																																																																														
RFWD2	0	MSKCC	GRCh37	1	176015357	176015357	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	55	638	0	ENST00000367669.3:c.1381C>G	p.His461Asp	p.H461D	ENST00000367669	NM_022457.5	461	Cat/Gat																																																																														
FANCA	0	MSKCC	GRCh37	16	89858399	89858399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	124	924	0	ENST00000389301.3:c.1161G>C	p.Gln387His	p.Q387H	ENST00000389301	NM_000135.2	387	caG/caC																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740526	58740526	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747990992		P-0019445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	99	849	0	ENST00000305921.3:c.1432del	p.Cys478AlafsTer5	p.C478Afs*5	ENST00000305921	NM_003620.3	477	aaT/aa																																																																														
PMS1	0	MSKCC	GRCh37	2	190728512	190728512	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	101	734	0	ENST00000441310.2:c.1900C>G	p.Gln634Glu	p.Q634E	ENST00000441310	NM_000534.4	634	Caa/Gaa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62324579	62324579	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144034326		P-0019445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	141	958	2	ENST00000508582.2:c.3007C>T	p.Arg1003Trp	p.R1003W	ENST00000508582		1003	Cgg/Tgg																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839874	27839874	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	88	574	0	ENST00000328488.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000328488	NM_003533.2	74	Gag/Cag																																																																														
TSC1	0	MSKCC	GRCh37	9	135779055	135779055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	68	494	0	ENST00000298552.3:c.2191G>C	p.Glu731Gln	p.E731Q	ENST00000298552	NM_001162426.1	731	Gaa/Caa																																																																														
MED12	0	MSKCC	GRCh37	X	70344925	70344925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	104	898	0	ENST00000374080.3:c.2155G>A	p.Glu719Lys	p.E719K	ENST00000374080		719	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	14	598	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	62	598	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	29	387	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	29	387	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	51	617	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	29	387	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30686374	30686374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	64	404	2	ENST00000359013.4:c.305G>T	p.Cys102Phe	p.C102F	ENST00000359013	NM_001024847.2	102	tGt/tTt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139410082	139410082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019446-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	116	893	0	ENST00000277541.6:c.1756A>G	p.Thr586Ala	p.T586A	ENST00000277541	NM_017617.3	586	Acc/Gcc																																																																														
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	249	397	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																																																														
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	209	733	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
TP53BP1	7158	MSKCC	GRCh37	15	43748660	43748661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	164	1156	1	ENST00000382044.4:c.2145dup	p.Glu716ArgfsTer9	p.E716Rfs*9	ENST00000382044	NM_001141980.1	715	-/A																																																																														
TET1	0	MSKCC	GRCh37	10	70332102	70332102	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	68	270	0	ENST00000373644.4:c.7C>T	p.Arg3Ter	p.R3*	ENST00000373644	NM_030625.2	3	Cga/Tga																																																																														
CBL	0	MSKCC	GRCh37	11	119146766	119146766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	217	738	2	ENST00000264033.4:c.929C>T	p.Ala310Val	p.A310V	ENST00000264033	NM_005188.3	310	gCt/gTt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806170	1806170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	409	1278	1	ENST00000260795.2:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000260795		397	Cgc/Tgc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244214	153244214	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	191	663	0	ENST00000281708.4:c.1943T>G	p.Leu648Arg	p.L648R	ENST00000281708	NM_033632.3	648	cTa/cGa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153252005	153252005	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	180	673	1	ENST00000281708.4:c.1001T>A	p.Leu334Ter	p.L334*	ENST00000281708	NM_033632.3	334	tTg/tAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	102	913	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0019450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	19	816	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0019450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	2344	614	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032057	26032057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	29	322	0	ENST00000244661.2:c.232G>C	p.Asp78His	p.D78H	ENST00000244661	NM_003537.3	78	Gac/Cac																																																																														
CARD11	0	MSKCC	GRCh37	7	2987257	2987257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	51	587	0	ENST00000396946.4:c.172G>C	p.Asp58His	p.D58H	ENST00000396946	NM_032415.4	58	Gat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	157	629	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266713	198266713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776846119		P-0019451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	49	543	0	ENST00000335508.6:c.2219G>A	p.Gly740Glu	p.G740E	ENST00000335508	NM_012433.2	740	gGa/gAa																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843502	156843502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	61	532	0	ENST00000524377.1:c.928G>A	p.Ala310Thr	p.A310T	ENST00000524377	NM_002529.3	310	Gca/Aca																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012956	176012956	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0019451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	41	414	3	ENST00000367669.3:c.1422-2A>T		p.X474_splice	ENST00000367669	NM_022457.5	474																																																																															
IKBKE	0	MSKCC	GRCh37	1	206651135	206651135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	169	864	0	ENST00000367120.3:c.745G>T	p.Ala249Ser	p.A249S	ENST00000367120	NM_014002.3	249	Gcc/Tcc																																																																														
DICER1	0	MSKCC	GRCh37	14	95578572	95578572	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	56	461	0	ENST00000343455.3:c.2053A>G	p.Ser685Gly	p.S685G	ENST00000343455	NM_177438.2	685	Agc/Ggc																																																																														
TP53	0	MSKCC	GRCh37	17	7578452	7578839	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAG	TGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAG	-			P-0019451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	59	749	0	ENST00000269305.4:c.376-285_478del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
MSH2	0	MSKCC	GRCh37	2	47672706	47672706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	73	517	2	ENST00000233146.2:c.1296G>T	p.Leu432Phe	p.L432F	ENST00000233146	NM_000251.2	432	ttG/ttT																																																																														
CSF1R	0	MSKCC	GRCh37	5	149434821	149434822	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0019451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	61	606	0	ENST00000286301.3:c.2632_2633delinsAA	p.Pro878Asn	p.P878N	ENST00000286301	NM_005211.3	878	CCt/AAt																																																																														
TAP2	0	MSKCC	GRCh37	6	32798557	32798557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	110	704	0	ENST00000374899.4:c.1299G>T	p.Met433Ile	p.M433I	ENST00000374899	NM_018833.2	433	atG/atT																																																																														
BCOR	0	MSKCC	GRCh37	X	39937145	39937145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	62	822	0	ENST00000378444.4:c.38G>C	p.Ser13Thr	p.S13T	ENST00000378444	NM_001123385.1	13	aGc/aCc																																																																														
TBX3	0	MSKCC	GRCh37	12	115118705	115118715	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGTTGGTGA	GTTGTTGGTGA	-			P-0019452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	269	805	0	ENST00000257566.3:c.626_636del	p.Leu209HisfsTer14	p.L209Hfs*14	ENST00000257566	NM_016569.3	209	cTCACCAACAAC/c																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267361	198267361	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	352	841	0	ENST00000335508.6:c.1996A>G	p.Lys666Glu	p.K666E	ENST00000335508	NM_012433.2	666	Aag/Gag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	60	817	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0019455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	14	625	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0019455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	17	623	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	426	679	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																														
MEN1	0	MSKCC	GRCh37	11	64571850	64571850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	199	980	2	ENST00000337652.1:c.1804G>A	p.Asp602Asn	p.D602N	ENST00000337652	NM_130803.2	602	Gac/Aac																																																																														
ARID2	0	MSKCC	GRCh37	12	46245322	46245322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	93	543	2	ENST00000334344.6:c.3416G>A	p.Gly1139Glu	p.G1139E	ENST00000334344	NM_152641.2	1139	gGa/gAa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420061	49420061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	60	656	0	ENST00000301067.7:c.15688T>C	p.Cys5230Arg	p.C5230R	ENST00000301067	NM_003482.3	5230	Tgt/Cgt																																																																														
FLT3	0	MSKCC	GRCh37	13	28589396	28589396	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	201	543	0	ENST00000241453.7:c.2654-3C>G		p.X885_splice	ENST00000241453	NM_004119.2	885																																																																															
MGA	0	MSKCC	GRCh37	15	42005660	42005660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	56	404	0	ENST00000219905.7:c.3396G>C	p.Leu1132Phe	p.L1132F	ENST00000219905	NM_001164273.1	1132	ttG/ttC																																																																														
NF1	0	MSKCC	GRCh37	17	29661909	29661909	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	107	637	0	ENST00000358273.4:c.5866C>G	p.Leu1956Val	p.L1956V	ENST00000358273	NM_001042492.2	1956	Cta/Gta																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243523	41243523	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	155	797	0	ENST00000357654.3:c.4025C>A	p.Ser1342Ter	p.S1342*	ENST00000357654	NM_007294.3	1342	tCa/tAa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36218419	36218419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	133	722	1	ENST00000222270.7:c.4198C>T	p.Arg1400Cys	p.R1400C	ENST00000222270	NM_014727.1	1400	Cgc/Tgc																																																																														
POLD1	0	MSKCC	GRCh37	19	50906843	50906843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	89	620	0	ENST00000440232.2:c.1231C>T	p.Gln411Ter	p.Q411*	ENST00000440232	NM_002691.3	411	Cag/Tag																																																																														
ASXL2	0	MSKCC	GRCh37	2	25991682	25991682	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	98	540	0	ENST00000435504.4:c.560C>G	p.Ser187Cys	p.S187C	ENST00000435504		187	tCc/tGc																																																																														
CUL3	0	MSKCC	GRCh37	2	225422464	225422464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	188	713	0	ENST00000264414.4:c.176G>C	p.Arg59Thr	p.R59T	ENST00000264414	NM_003590.4	59	aGa/aCa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62298822	62298822	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	295	793	1	ENST00000508582.2:c.687G>T	p.Arg229Ser	p.R229S	ENST00000508582		229	agG/agT																																																																														
RTEL1	0	MSKCC	GRCh37	20	62320966	62320966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	121	701	0	ENST00000508582.2:c.2062G>T	p.Asp688Tyr	p.D688Y	ENST00000508582		688	Gat/Tat																																																																														
EP300	0	MSKCC	GRCh37	22	41553371	41553371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	201	725	0	ENST00000263253.7:c.3460G>C	p.Asp1154His	p.D1154H	ENST00000263253	NM_001429.3	1154	Gac/Cac																																																																														
PBRM1	0	MSKCC	GRCh37	3	52621383	52621383	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	135	712	0	ENST00000394830.3:c.3034G>C	p.Val1012Leu	p.V1012L	ENST00000394830	NM_018313.4	1012	Gtc/Ctc																																																																														
SHQ1	0	MSKCC	GRCh37	3	72866509	72866509	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	58	526	0	ENST00000325599.8:c.754C>G	p.Gln252Glu	p.Q252E	ENST00000325599	NM_018130.2	252	Cag/Gag																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138409969	138409969	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	78	627	0	ENST00000289153.2:c.1909C>G	p.Gln637Glu	p.Q637E	ENST00000289153	NM_006219.2	637	Caa/Gaa																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185190777	185190777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1400	116	611	0	ENST00000265026.3:c.1658G>C	p.Arg553Thr	p.R553T	ENST00000265026	NM_004721.4	553	aGa/aCa																																																																														
LATS1	0	MSKCC	GRCh37	6	150001085	150001085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	308	637	0	ENST00000253339.5:c.2519G>T	p.Gly840Val	p.G840V	ENST00000253339		840	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0019460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	155	1005	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
STK19	0	MSKCC	GRCh37	6	31948503	31948503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	84	589	0	ENST00000375331.2:c.974G>T	p.Arg325Leu	p.R325L	ENST00000375331	NM_004197.1	325	cGg/cTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436075	49436075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	40	506	0	ENST00000301067.7:c.5906C>A	p.Pro1969His	p.P1969H	ENST00000301067	NM_003482.3	1969	cCc/cAc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31431786	31431786	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	39	638	0	ENST00000344624.3:c.3043-1G>C		p.X1015_splice	ENST00000344624		1015																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	161	594	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0019461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	113	762	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TRAF7	0	MSKCC	GRCh37	16	2225896	2225896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1424	78	749	0	ENST00000326181.6:c.1688A>G	p.Tyr563Cys	p.Y563C	ENST00000326181	NM_032271.2	563	tAc/tGc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858351	9858351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	118	538	0	ENST00000330684.3:c.3050C>A	p.Ser1017Tyr	p.S1017Y	ENST00000330684	NM_001134407.1	1017	tCc/tAc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78765275	78765276	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTG			P-0019462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	117	595	0	ENST00000306801.3:c.857_858insTGT	p.Val287dup	p.V287dup	ENST00000306801	NM_020761.2	287	ctg/cTTGtg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18280088	18280088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	87	236	0	ENST00000222254.8:c.2171C>T	p.Pro724Leu	p.P724L	ENST00000222254	NM_005027.3	724	cCg/cTg																																																																														
EP300	0	MSKCC	GRCh37	22	41573003	41573003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	263	1027	1	ENST00000263253.7:c.5288G>A	p.Arg1763Gln	p.R1763Q	ENST00000263253	NM_001429.3	1763	cGg/cAg																																																																														
NPM1	0	MSKCC	GRCh37	5	170816861	170817121	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTATAGTCTTTTATGGGTGTCTGTAGAGGTTTCTGTTCAAGAAATCTAGGAATTGATCATTCTGCTTTGCCCTCTGGTAGCTAAAATAGTGAAAAACTAGTTCAAAAGTTAGACCTGACCTTTTTGGTTACCCACACTTAAGTTTCAGTGTTATTTTTCTCCTTGTTAGAGTTGCTTTTTTCTTCATTTACAGGTTGTGAACTAAAGGCCGACAAAGATTATCACTTTAAGGTGGATAATGATGAAAATGAGCACCAGTT	ATTATAGTCTTTTATGGGTGTCTGTAGAGGTTTCTGTTCAAGAAATCTAGGAATTGATCATTCTGCTTTGCCCTCTGGTAGCTAAAATAGTGAAAAACTAGTTCAAAAGTTAGACCTGACCTTTTTGGTTACCCACACTTAAGTTTCAGTGTTATTTTTCTCCTTGTTAGAGTTGCTTTTTTCTTCATTTACAGGTTGTGAACTAAAGGCCGACAAAGATTATCACTTTAAGGTGGATAATGATGAAAATGAGCACCAGTT	-			P-0019462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	66	34	0	ENST00000296930.5:c.59-192_127del		p.X20_splice	ENST00000296930	NM_002520.6	20																																																																															
HIST1H3C	0	MSKCC	GRCh37	6	26045712	26045712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	100	260	0	ENST00000540144.1:c.74C>T	p.Ala25Val	p.A25V	ENST00000540144	NM_003531.2	25	gCa/gTa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412639	139412639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	45	874	3	ENST00000277541.6:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000277541	NM_017617.3	402	tCg/tTg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114711344	114711344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	68	560	0	ENST00000543371.1:c.359C>T	p.Ser120Leu	p.S120L	ENST00000543371	NM_001198531.1	120	tCg/tTg																																																																														
JUN	0	MSKCC	GRCh37	1	59248297	59248297	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	16	140	0	ENST00000371222.2:c.446C>A	p.Ser149Ter	p.S149*	ENST00000371222	NM_002228.3	149	tCg/tAg																																																																														
IKBKE	0	MSKCC	GRCh37	1	206666608	206666608	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	110	703	0	ENST00000367120.3:c.1942G>C	p.Glu648Gln	p.E648Q	ENST00000367120	NM_014002.3	648	Gag/Cag																																																																														
KDM5A	0	MSKCC	GRCh37	12	495071	495071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	74	704	1	ENST00000399788.2:c.235G>A	p.Glu79Lys	p.E79K	ENST00000399788	NM_001042603.1	79	Gaa/Aaa																																																																														
TBX3	0	MSKCC	GRCh37	12	115114246	115114247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCT			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	181	890	0	ENST00000257566.3:c.967_970dup	p.Val324GlufsTer4	p.V324Efs*4	ENST00000257566	NM_016569.3	324	gtg/gAGGGtg																																																																														
CDH1	0	MSKCC	GRCh37	16	68844098	68844099	+	splice_acceptor_variant	Splice_Site	DNP	AG	AG	CC			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	111	610	0	ENST00000261769.5:c.688-2_688-1delinsCC		p.X230_splice	ENST00000261769	NM_004360.3	230																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11114044	11114044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	31	985	0	ENST00000344626.4:c.1972G>A	p.Glu658Lys	p.E658K	ENST00000344626	NM_003072.3	658	Gaa/Aaa																																																																														
AXL	0	MSKCC	GRCh37	19	41748805	41748805	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	103	1067	0	ENST00000301178.4:c.1330C>G	p.Pro444Ala	p.P444A	ENST00000301178	NM_021913.4	444	Cct/Gct																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023157	31023157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	79	922	0	ENST00000375687.4:c.2642G>A	p.Arg881Lys	p.R881K	ENST00000375687	NM_015338.5	881	aGa/aAa																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191497	185191497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	98	935	0	ENST00000265026.3:c.2378C>G	p.Ser793Cys	p.S793C	ENST00000265026	NM_004721.4	793	tCt/tGt																																																																														
KDR	0	MSKCC	GRCh37	4	55970907	55970907	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	100	848	0	ENST00000263923.4:c.1890G>C	p.Lys630Asn	p.K630N	ENST00000263923	NM_002253.2	630	aaG/aaC																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032057	26032057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	110	499	0	ENST00000244661.2:c.232G>A	p.Asp78Asn	p.D78N	ENST00000244661	NM_003537.3	78	Gac/Aac																																																																														
CARD11	0	MSKCC	GRCh37	7	2962914	2962914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147823569		P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	152	1070	2	ENST00000396946.4:c.1994C>T	p.Ser665Leu	p.S665L	ENST00000396946	NM_032415.4	665	tCg/tTg																																																																														
CARD11	0	MSKCC	GRCh37	7	2984044	2984044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	46	734	0	ENST00000396946.4:c.486G>C	p.Glu162Asp	p.E162D	ENST00000396946	NM_032415.4	162	gaG/gaC																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860485	151860485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	84	840	0	ENST00000262189.6:c.10177G>A	p.Glu3393Lys	p.E3393K	ENST00000262189	NM_170606.2	3393	Gaa/Aaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860512	151860512	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	88	799	0	ENST00000262189.6:c.10150G>T	p.Glu3384Ter	p.E3384*	ENST00000262189	NM_170606.2	3384	Gaa/Taa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151946966	151946967	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	57	646	0	ENST00000262189.6:c.1807_1808del	p.Ile603CysfsTer11	p.I603Cfs*11	ENST00000262189	NM_170606.2	603	ATt/t																																																																														
NTRK2	0	MSKCC	GRCh37	9	87342625	87342625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	89	756	0	ENST00000277120.3:c.910C>G	p.Pro304Ala	p.P304A	ENST00000277120		304	Cca/Gca																																																																														
MTOR	0	MSKCC	GRCh37	1	11188071	11188071	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	19	440	0	ENST00000361445.4:c.6023A>G	p.Gln2008Arg	p.Q2008R	ENST00000361445	NM_004958.3	2008	cAg/cGg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	71	757	4	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46509485	46509485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	117	564	2	ENST00000262741.5:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000262741	NM_003629.3	416	Gca/Aca																																																																														
JUN	3725	MSKCC	GRCh37	1	59248285	59248285	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	12	93	1	ENST00000371222.2:c.458del	p.Gly153AlafsTer29	p.G153Afs*29	ENST00000371222	NM_002228.3	153	gGc/gc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175973	176175973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	29	277	1	ENST00000367669.3:c.142G>A	p.Val48Met	p.V48M	ENST00000367669	NM_022457.5	48	Gtg/Atg																																																																														
IKBKE	0	MSKCC	GRCh37	1	206669462	206669462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	74	713	2	ENST00000367120.3:c.2135C>T	p.Ala712Val	p.A712V	ENST00000367120	NM_014002.3	712	gCa/gTa																																																																														
RET	0	MSKCC	GRCh37	10	43615077	43615077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	49	758	1	ENST00000355710.3:c.2491G>T	p.Gly831Cys	p.G831C	ENST00000355710	NM_020975.4	831	Ggc/Tgc																																																																														
SUFU	0	MSKCC	GRCh37	10	104353420	104353420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	75	883	1	ENST00000369902.3:c.625C>T	p.His209Tyr	p.H209Y	ENST00000369902	NM_016169.3	209	Cac/Tac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	302	566	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FGF19	0	MSKCC	GRCh37	11	69518458	69518458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	149	430	0	ENST00000294312.3:c.187C>T	p.Arg63Cys	p.R63C	ENST00000294312	NM_005117.2	63	Cgt/Tgt																																																																														
FGF4	0	MSKCC	GRCh37	11	69589692	69589692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	10	184	0	ENST00000168712.1:c.161C>T	p.Ser54Leu	p.S54L	ENST00000168712	NM_002007.2	54	tCg/tTg																																																																														
FGF3	0	MSKCC	GRCh37	11	69633547	69633547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	163	513	4	ENST00000334134.2:c.155C>T	p.Thr52Met	p.T52M	ENST00000334134	NM_005247.2	52	aCg/aTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71936141	71936141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	23	376	0	ENST00000298229.2:c.113C>T	p.Ala38Val	p.A38V	ENST00000298229	NM_001567.3	38	gCg/gTg																																																																														
PGR	0	MSKCC	GRCh37	11	100998220	100998220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	179	594	1	ENST00000325455.5:c.1582G>A	p.Ala528Thr	p.A528T	ENST00000325455	NM_001202474.3	528	Gcc/Acc																																																																														
PGR	0	MSKCC	GRCh37	11	100998289	100998289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	63	210	2	ENST00000325455.5:c.1513G>A	p.Ala505Thr	p.A505T	ENST00000325455	NM_001202474.3	505	Gcc/Acc																																																																														
ATM	0	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	14	279	0	ENST00000278616.4:c.8432dupA	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																																																														
ATM	0	MSKCC	GRCh37	11	108216609	108216609	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141534716		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	20	365	0	ENST00000278616.4:c.8558C>T	p.Thr2853Met	p.T2853M	ENST00000278616	NM_000051.3	2853	aCg/aTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343356	118343356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	103	387	0	ENST00000534358.1:c.1482G>T	p.Glu494Asp	p.E494D	ENST00000534358	NM_005933.3	494	gaG/gaT																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344146	118344146	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	190	607	0	ENST00000534358.1:c.2272A>G	p.Arg758Gly	p.R758G	ENST00000534358	NM_005933.3	758	Aga/Gga																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	49	678	4	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376016	118376016	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	43	591	0	ENST00000534358.1:c.9409G>T	p.Gly3137Ter	p.G3137*	ENST00000534358	NM_005933.3	3137	Gga/Tga																																																																														
KMT2A	0	MSKCC	GRCh37	11	118390420	118390420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	79	724	0	ENST00000534358.1:c.11234A>G	p.Asn3745Ser	p.N3745S	ENST00000534358	NM_005933.3	3745	aAt/aGt																																																																														
KDM5A	0	MSKCC	GRCh37	12	416219	416219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	183	609	2	ENST00000399788.2:c.3967C>T	p.Arg1323Trp	p.R1323W	ENST00000399788	NM_001042603.1	1323	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435198	49435198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	26	506	4	ENST00000301067.7:c.6355G>A	p.Ala2119Thr	p.A2119T	ENST00000301067	NM_003482.3	2119	Gct/Act																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445614	49445614	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	383	1178	0	ENST00000301067.7:c.1852del	p.Ser618ProfsTer312	p.S618Pfs*312	ENST00000301067	NM_003482.3	618	Tcc/cc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56480424	56480424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	47	712	0	ENST00000267101.3:c.531G>T	p.Lys177Asn	p.K177N	ENST00000267101	NM_001982.3	177	aaG/aaT																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495715	56495715	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	71	560	0	ENST00000267101.3:c.3910delC	p.His1304MetfsTer7	p.H1304Mfs*7	ENST00000267101	NM_001982.3	1302	gCc/gc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112190	115112190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	246	635	0	ENST00000257566.3:c.1550C>T	p.Pro517Leu	p.P517L	ENST00000257566	NM_016569.3	517	cCg/cTg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112505	115112505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	60	856	0	ENST00000257566.3:c.1235T>C	p.Val412Ala	p.V412A	ENST00000257566	NM_016569.3	412	gTc/gCc																																																																														
TBX3	0	MSKCC	GRCh37	12	115120797	115120797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	55	527	0	ENST00000257566.3:c.209G>A	p.Gly70Glu	p.G70E	ENST00000257566	NM_016569.3	70	gGg/gAg																																																																														
POLE	0	MSKCC	GRCh37	12	133219487	133219487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	147	868	4	ENST00000320574.5:c.4647del	p.Lys1550AsnfsTer12	p.K1550Nfs*12	ENST00000320574	NM_006231.2	1549	ccC/cc																																																																														
POLE	0	MSKCC	GRCh37	12	133245441	133245441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	64	762	0	ENST00000320574.5:c.1879G>A	p.Val627Met	p.V627M	ENST00000320574	NM_006231.2	627	Gtg/Atg																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	54	804	2	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
FOXO1	0	MSKCC	GRCh37	13	41240333	41240333	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	108	532	0	ENST00000379561.5:c.17A>G	p.Gln6Arg	p.Q6R	ENST00000379561	NM_002015.3	6	cAg/cGg																																																																														
IRS2	0	MSKCC	GRCh37	13	110438211	110438211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	16	230	1	ENST00000375856.3:c.190G>A	p.Gly64Arg	p.G64R	ENST00000375856	NM_003749.2	64	Ggg/Agg																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988327	36988327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	60	627	1	ENST00000354822.5:c.326C>T	p.Ser109Leu	p.S109L	ENST00000354822	NM_001079668.2	109	tCg/tTg																																																																														
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	57	547	2	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40679406	40679406	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	88	693	1	ENST00000249776.8:c.484G>A	p.Gly162Ser	p.G162S	ENST00000249776	NM_033286.3	162	Ggc/Agc																																																																														
MGA	0	MSKCC	GRCh37	15	42041422	42041424	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	174	666	0	ENST00000219905.7:c.5622_5624del	p.Ser1875del	p.S1875del	ENST00000219905	NM_001164273.1	1873	TCT/-																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	63	674	4	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																														
TSC2	0	MSKCC	GRCh37	16	2134575	2134575	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142848358		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	40	816	3	ENST00000219476.3:c.4352G>A	p.Arg1451His	p.R1451H	ENST00000219476	NM_000548.3	1451	cGc/cAc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2225955	2225955	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	31	665	2	ENST00000326181.6:c.1746+1G>A		p.X582_splice	ENST00000326181	NM_032271.2	582																																																																															
GRIN2A	0	MSKCC	GRCh37	16	9858517	9858517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	49	623	0	ENST00000330684.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000330684	NM_001134407.1	962	Gaa/Aaa																																																																														
MAPK3	0	MSKCC	GRCh37	16	30133281	30133283	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	207	748	0	ENST00000263025.4:c.215_217del	p.Lys72del	p.K72del	ENST00000263025	NM_002746.2	72	aAGAtc/atc																																																																														
CBFB	0	MSKCC	GRCh37	16	67116167	67116167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	176	634	0	ENST00000412916.2:c.451C>T	p.Arg151Cys	p.R151C	ENST00000412916		151	Cgc/Tgc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	34	598	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81953228	81953228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	90	348	0	ENST00000359376.3:c.2194C>T	p.Arg732Cys	p.R732C	ENST00000359376	NM_002661.3	732	Cgc/Tgc																																																																														
FANCA	0	MSKCC	GRCh37	16	89836659	89836659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	232	889	0	ENST00000389301.3:c.2231C>T	p.Pro744Leu	p.P744L	ENST00000389301	NM_000135.2	744	cCc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7574030	7574030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	46	646	0	ENST00000269305.4:c.997C>T	p.Arg333Cys	p.R333C	ENST00000269305	NM_001126112.2	333	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	72	828	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	79	734	1	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032541	12032541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	159	539	0	ENST00000353533.5:c.977C>T	p.Pro326Leu	p.P326L	ENST00000353533	NM_003010.3	326	cCg/cTg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15942857	15942857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	33	664	1	ENST00000268712.3:c.6845A>G	p.His2282Arg	p.H2282R	ENST00000268712	NM_006311.3	2282	cAt/cGt																																																																														
NF1	4763	MSKCC	GRCh37	17	29486049	29486050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	112	575	0	ENST00000358273.4:c.233dup	p.Asn78LysfsTer29	p.N78Kfs*29	ENST00000358273	NM_001042492.2	76	gaa/gAaa																																																																														
NF1	0	MSKCC	GRCh37	17	29579995	29579996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	33	619	0	ENST00000358273.4:c.4157dupA	p.Glu1387GlyfsTer8	p.E1387Gfs*8	ENST00000358273	NM_001042492.2	1384	gaa/gAaa																																																																														
SUZ12	0	MSKCC	GRCh37	17	30325864	30325864	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	33	666	0	ENST00000322652.5:c.2062T>A	p.Leu688Ile	p.L688I	ENST00000322652	NM_015355.2	688	Tta/Ata																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	259	658	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	141	710	3	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
RPTOR	0	MSKCC	GRCh37	17	78829286	78829286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	62	665	0	ENST00000306801.3:c.1337G>A	p.Arg446Gln	p.R446Q	ENST00000306801	NM_020761.2	446	cGg/cAg																																																																														
TCF3	0	MSKCC	GRCh37	19	1619799	1619799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	50	862	1	ENST00000344749.5:c.1147G>A	p.Asp383Asn	p.D383N	ENST00000344749	NM_001136139.2	383	Gac/Aac																																																																														
DOT1L	0	MSKCC	GRCh37	19	2229782	2229782	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	141	754	0	ENST00000398665.3:c.4607-2A>G		p.X1536_splice	ENST00000398665	NM_032482.2	1536																																																																															
PTPRS	0	MSKCC	GRCh37	19	5210512	5210512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	63	686	0	ENST00000357368.4:c.5455A>G	p.Ile1819Val	p.I1819V	ENST00000357368	NM_002850.3	1819	Atc/Gtc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5229545	5229545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	91	251	0	ENST00000357368.4:c.2306G>A	p.Arg769His	p.R769H	ENST00000357368	NM_002850.3	769	cGc/cAc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272201	15272201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	51	614	2	ENST00000263388.2:c.6238C>T	p.Arg2080Trp	p.R2080W	ENST00000263388	NM_000435.2	2080	Cgg/Tgg																																																																														
BRD4	0	MSKCC	GRCh37	19	15353974	15353974	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	51	235	0	ENST00000263377.2:c.2906A>T	p.Gln969Leu	p.Q969L	ENST00000263377	NM_058243.2	969	cAg/cTg																																																																														
BABAM1	0	MSKCC	GRCh37	19	17379880	17379880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	58	1080	0	ENST00000359435.4:c.265G>A	p.Val89Ile	p.V89I	ENST00000359435	NM_001033549.1	89	Gtc/Atc																																																																														
JAK3	0	MSKCC	GRCh37	19	17955187	17955187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	112	908	0	ENST00000458235.1:c.40C>T	p.Arg14Cys	p.R14C	ENST00000458235	NM_000215.3	14	Cgt/Tgt																																																																														
UPF1	0	MSKCC	GRCh37	19	18966829	18966829	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	265	851	0	ENST00000262803.5:c.1640A>G	p.Lys547Arg	p.K547R	ENST00000262803	NM_002911.3	547	aAg/aGg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212225	36212225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	395	799	0	ENST00000222270.7:c.1976T>C	p.Leu659Pro	p.L659P	ENST00000222270	NM_014727.1	659	cTg/cCg																																																																														
POLD1	0	MSKCC	GRCh37	19	50919935	50919935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	139	795	0	ENST00000440232.2:c.3022C>T	p.Arg1008Cys	p.R1008C	ENST00000440232	NM_002691.3	1008	Cgc/Tgc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25458619	25458619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	162	605	0	ENST00000264709.3:c.2554A>G	p.Met852Val	p.M852V	ENST00000264709	NM_175629.2	852	Atg/Gtg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467482	25467484	+	inframe_deletion	In_Frame_Del	DEL	CGT	CGT	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	70	684	2	ENST00000264709.3:c.1592_1594del	p.Asp531del	p.D531del	ENST00000264709	NM_175629.2	531	gACGgc/ggc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46607815	46607816	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	80	918	0	ENST00000263734.3:c.2009dup	p.Val671CysfsTer45	p.V671Cfs*45	ENST00000263734	NM_001430.4	668	-/C																																																																														
REL	0	MSKCC	GRCh37	2	61147565	61147565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	13	45	0	ENST00000295025.8:c.970A>G	p.Thr324Ala	p.T324A	ENST00000295025	NM_002908.2	324	Aca/Gca																																																																														
IRS1	0	MSKCC	GRCh37	2	227660251	227660252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	167	618	2	ENST00000305123.5:c.3203dup	p.Met1069HisfsTer12	p.M1069Hfs*12	ENST00000305123	NM_005544.2	1068	ggc/ggGc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	71	882	4	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	55	195	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
SRC	0	MSKCC	GRCh37	20	36012647	36012647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	172	319	0	ENST00000358208.4:c.91G>A	p.Ala31Thr	p.A31T	ENST00000358208		31	Gct/Act																																																																														
TOP1	0	MSKCC	GRCh37	20	39728761	39728762	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	267	635	0	ENST00000361337.2:c.1045_1046del	p.Arg349AspfsTer3	p.R349Dfs*3	ENST00000361337	NM_003286.2	347	aaAGag/aaag																																																																														
GNAS	0	MSKCC	GRCh37	20	57478633	57478633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	58	656	1	ENST00000371085.3:c.305C>T	p.Ala102Val	p.A102V	ENST00000371085	NM_000516.4	102	gCg/gTg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	53	493	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
EP300	0	MSKCC	GRCh37	22	41564828	41564828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	74	770	1	ENST00000263253.7:c.4129C>T	p.His1377Tyr	p.H1377Y	ENST00000263253	NM_001429.3	1377	Cat/Tat																																																																														
RAF1	0	MSKCC	GRCh37	3	12632347	12632347	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	53	667	0	ENST00000251849.4:c.1320del	p.Gln441ArgfsTer5	p.Q441Rfs*5	ENST00000251849	NM_002880.3	440	ttT/tt																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	185	798	2	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																														
BAP1	0	MSKCC	GRCh37	3	52438516	52438518	+	missense_variant	Missense_Mutation	ONP	ATA	ATA	CTC			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	155	833	0	ENST00000460680.1:c.1201_1203delinsGAG	p.Tyr401Glu	p.Y401E	ENST00000460680	NM_004656.3	401	TAT/GAG																																																																														
EPHB1	0	MSKCC	GRCh37	3	134872997	134872997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	86	562	0	ENST00000398015.3:c.1301C>A	p.Pro434His	p.P434H	ENST00000398015	NM_004441.4	434	cCc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	14	473	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	28	540	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
BCL6	0	MSKCC	GRCh37	3	187447436	187447436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	148	652	0	ENST00000232014.4:c.757G>A	p.Val253Met	p.V253M	ENST00000232014	NM_001130845.1	253	Gtg/Atg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1801053	1801053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	95	987	2	ENST00000260795.2:c.182G>A	p.Cys61Tyr	p.C61Y	ENST00000260795		61	tGt/tAt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280032	66280032	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	20	364	0	ENST00000273854.3:c.1657C>T	p.Arg553Ter	p.R553*	ENST00000273854	NM_004439.5	553	Cga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187532624	187532624	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200112487		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	150	545	0	ENST00000441802.2:c.9769C>T	p.Arg3257Trp	p.R3257W	ENST00000441802	NM_005245.3	3257	Cgg/Tgg																																																																														
FAT1	0	MSKCC	GRCh37	4	187628340	187628340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	112	667	1	ENST00000441802.2:c.2642G>A	p.Arg881His	p.R881H	ENST00000441802	NM_005245.3	881	cGc/cAc																																																																														
TERT	0	MSKCC	GRCh37	5	1293871	1293871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	227	1069	1	ENST00000310581.5:c.1130G>A	p.Arg377His	p.R377H	ENST00000310581	NM_198253.2	377	cGc/cAc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31409418	31409418	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	64	693	0	ENST00000344624.3:c.3689T>C	p.Ile1230Thr	p.I1230T	ENST00000344624		1230	aTt/aCt																																																																														
IL7R	0	MSKCC	GRCh37	5	35876095	35876095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	130	431	0	ENST00000303115.3:c.887T>C	p.Val296Ala	p.V296A	ENST00000303115	NM_002185.3	296	gTg/gCg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	306	937	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
NSD1	0	MSKCC	GRCh37	5	176673711	176673711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	97	623	0	ENST00000439151.2:c.4411C>T	p.Arg1471Ter	p.R1471*	ENST00000439151	NM_022455.4	1471	Cga/Tga																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056541	26056541	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	66	280	0	ENST00000343677.2:c.116del	p.Pro39ArgfsTer24	p.P39Rfs*24	ENST00000343677	NM_005319.3	39	cCg/cg																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324567	31324567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	53	591	0	ENST00000412585.2:c.241C>T	p.Pro81Ser	p.P81S	ENST00000412585	NM_005514.6	81	Ccg/Tcg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163846	32163846	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	144	538	1	ENST00000375023.3:c.5380G>T	p.Glu1794Ter	p.E1794*	ENST00000375023	NM_004557.3	1794	Gag/Tag																																																																														
EPHA7	0	MSKCC	GRCh37	6	93964420	93964420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	35	690	0	ENST00000369303.4:c.2477T>C	p.Met826Thr	p.M826T	ENST00000369303	NM_004440.3	826	aTg/aCg																																																																														
ESR1	0	MSKCC	GRCh37	6	152265394	152265394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	113	560	4	ENST00000206249.3:c.847G>T	p.Ala283Ser	p.A283S	ENST00000206249	NM_000125.3	283	Gct/Tct																																																																														
ETV1	0	MSKCC	GRCh37	7	13940395	13940395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	163	560	0	ENST00000405192.2:c.1111C>T	p.Arg371Cys	p.R371C	ENST00000405192	NM_001163147.1	371	Cgc/Tgc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729844	41729844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	90	362	0	ENST00000242208.4:c.685C>T	p.Arg229Trp	p.R229W	ENST00000242208	NM_002192.2	229	Cgg/Tgg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509806	106509806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	54	780	1	ENST00000359195.3:c.1800G>T	p.Gln600His	p.Q600H	ENST00000359195	NM_002649.2	600	caG/caT																																																																														
MET	0	MSKCC	GRCh37	7	116339370	116339370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	26	478	0	ENST00000397752.3:c.232C>A	p.Leu78Ile	p.L78I	ENST00000397752	NM_000245.2	78	Ctt/Att																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	193	614	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RHEB	0	MSKCC	GRCh37	7	151216593	151216593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	76	206	1	ENST00000262187.5:c.5C>T	p.Pro2Leu	p.P2L	ENST00000262187	NM_005614.3	2	cCg/cTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151866289	151866289	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	90	709	0	ENST00000262189.6:c.9499T>G	p.Phe3167Val	p.F3167V	ENST00000262189	NM_170606.2	3167	Ttt/Gtt																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	370	630	24	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38173513	38173513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	92	610	2	ENST00000317025.8:c.1903C>T	p.Arg635Cys	p.R635C	ENST00000317025	NM_023034.1	635	Cgc/Tgc																																																																														
SOX17	0	MSKCC	GRCh37	8	55371995	55371995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	38	673	2	ENST00000297316.4:c.685G>A	p.Gly229Ser	p.G229S	ENST00000297316	NM_022454.3	229	Ggc/Agc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8340351	8340351	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	31	461	0	ENST00000356435.5:c.5245del	p.Met1749TrpfsTer23	p.M1749Wfs*23	ENST00000356435		1749	Atg/tg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499763	8499763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	151	655	3	ENST00000356435.5:c.2206G>A	p.Val736Met	p.V736M	ENST00000356435		736	Gtg/Atg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	208	536	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	208	536	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	208	536	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
ABL1	0	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	272	941	0	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																														
RXRA	0	MSKCC	GRCh37	9	137293628	137293628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	196	962	0	ENST00000481739.1:c.179G>A	p.Gly60Asp	p.G60D	ENST00000481739	NM_002957.4	60	gGc/gAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47028845	47028845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	42	800	2	ENST00000329236.7:c.149G>A	p.Ser50Asn	p.S50N	ENST00000329236	NM_001204466.1	50	aGc/aAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47040987	47040987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	162	753	1	ENST00000329236.7:c.1283G>A	p.Gly428Asp	p.G428D	ENST00000329236	NM_001204466.1	428	gGc/gAc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	119	680	2	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
GATA1	0	MSKCC	GRCh37	X	48650481	48650481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	249	1030	0	ENST00000376670.3:c.451G>A	p.Ala151Thr	p.A151T	ENST00000376670	NM_002049.3	151	Gca/Aca																																																																														
AMER1	0	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	218	889	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
MED12	0	MSKCC	GRCh37	X	70344155	70344155	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	149	652	3	ENST00000374080.3:c.1894del	p.Arg632GlyfsTer79	p.R632Gfs*79	ENST00000374080		631	Ccc/cc																																																																														
MED12	0	MSKCC	GRCh37	X	70357196	70357196	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200663107		P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	41	682	1	ENST00000374080.3:c.5711C>T	p.Ala1904Val	p.A1904V	ENST00000374080		1904	gCg/gTg																																																																														
BTK	0	MSKCC	GRCh37	X	100608214	100608214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	169	674	0	ENST00000308731.7:c.1876G>T	p.Val626Leu	p.V626L	ENST00000308731	NM_000061.2	626	Gta/Tta																																																																														
PBRM1	0	MSKCC	GRCh37	3	52676062	52676062	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	132	348	1	ENST00000394830.3:c.996-1G>C		p.X332_splice	ENST00000394830	NM_018313.4	332																																																																															
IKBKE	0	MSKCC	GRCh37	1	206651537	206651537	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	134	678	1	ENST00000367120.3:c.847A>T	p.Asn283Tyr	p.N283Y	ENST00000367120	NM_014002.3	283	Aac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	76	864	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	119	1157	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
STK11	0	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	165	1079	2	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11113723	11113723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	150	969	0	ENST00000344626.4:c.1831C>T	p.Gln611Ter	p.Q611*	ENST00000344626	NM_003072.3	611	Cag/Tag																																																																														
PREX2	0	MSKCC	GRCh37	8	68950446	68950446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	61	796	0	ENST00000288368.4:c.758T>A	p.Leu253Gln	p.L253Q	ENST00000288368	NM_024870.2	253	cTg/cAg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412571	63412571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	79	435	0	ENST00000330258.3:c.596G>T	p.Arg199Met	p.R199M	ENST00000330258	NM_152424.3	199	aGg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	49	769	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108218020	108218020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	66	523	0	ENST00000278616.4:c.8599G>A	p.Gly2867Arg	p.G2867R	ENST00000278616	NM_000051.3	2867	Gga/Aga																																																																														
IGF1	0	MSKCC	GRCh37	12	102813301	102813301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	36	590	1	ENST00000307046.8:c.388C>A	p.Pro130Thr	p.P130T	ENST00000307046	NM_001111285.1	130	Ccc/Acc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992287	72992287	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	70	1152	1	ENST00000268489.5:c.1758G>T	p.Arg586Ser	p.R586S	ENST00000268489	NM_006885.3	586	agG/agT																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790122	40790122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	37	740	0	ENST00000373198.4:c.2609G>T	p.Arg870Leu	p.R870L	ENST00000373198	NM_133170.3	870	cGc/cTc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356258	66356258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	47	755	0	ENST00000273854.3:c.1239G>C	p.Arg413Ser	p.R413S	ENST00000273854	NM_004439.5	413	agG/agC																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0019471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	174	462	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	34	257	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0019471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	97	342	2	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	133	432	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																																																														
TP53	0	MSKCC	GRCh37	17	7579317	7579317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	164	477	1	ENST00000269305.4:c.370delT	p.Cys124AlafsTer46	p.C124Afs*46	ENST00000269305	NM_001126112.2	124	Tgc/gc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610306	10610306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	121	756	1	ENST00000171111.5:c.404G>A	p.Arg135His	p.R135H	ENST00000171111	NM_203500.1	135	cGc/cAc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715995	52715995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	186	524	0	ENST00000322088.6:c.560C>T	p.Ser187Phe	p.S187F	ENST00000322088	NM_014225.5	187	tCc/tTc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249083	55249083	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	59	497	0	ENST00000275493.2:c.2381C>G	p.Pro794Arg	p.P794R	ENST00000275493	NM_005228.3	794	cCc/cGc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0019472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	390	822	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7579323	7579324	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	80	813	0	ENST00000269305.4:c.363dup	p.Val122CysfsTer27	p.V122Cfs*27	ENST00000269305	NM_001126112.2	121	-/T																																																																														
MTOR	0	MSKCC	GRCh37	1	11199471	11199471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	59	723	0	ENST00000361445.4:c.5020G>T	p.Val1674Leu	p.V1674L	ENST00000361445	NM_004958.3	1674	Gtg/Ttg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822201	72822201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	45	843	0	ENST00000268489.5:c.9974G>T	p.Gly3325Val	p.G3325V	ENST00000268489	NM_006885.3	3325	gGc/gTc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59870975	59870975	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	89	656	0	ENST00000259008.2:c.1456A>G	p.Thr486Ala	p.T486A	ENST00000259008	NM_032043.2	486	Act/Gct																																																																														
CALR	0	MSKCC	GRCh37	19	13051166	13051166	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	72	756	0	ENST00000316448.5:c.602A>C	p.Asp201Ala	p.D201A	ENST00000316448	NM_004343.3	201	gAc/gCc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15296409	15296409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	50	1237	0	ENST00000263388.2:c.2033G>T	p.Gly678Val	p.G678V	ENST00000263388	NM_000435.2	678	gGc/gTc																																																																														
CD79A	0	MSKCC	GRCh37	19	42383136	42383136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	54	871	0	ENST00000221972.3:c.156C>A	p.Phe52Leu	p.F52L	ENST00000221972	NM_021601.3	52	ttC/ttA																																																																														
AURKA	0	MSKCC	GRCh37	20	54961465	54961465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	46	399	0	ENST00000312783.6:c.167G>T	p.Arg56Leu	p.R56L	ENST00000312783	NM_198436.1	56	cGc/cTc																																																																														
PARK2	0	MSKCC	GRCh37	6	163148696	163148696	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	60	684	0	ENST00000366898.1:c.5T>G	p.Ile2Arg	p.I2R	ENST00000366898	NM_004562.2	2	aTa/aGa																																																																														
CARD11	0	MSKCC	GRCh37	7	2962906	2962906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	81	1002	4	ENST00000396946.4:c.2002C>A	p.His668Asn	p.H668N	ENST00000396946	NM_032415.4	668	Cac/Aac																																																																														
HGF	0	MSKCC	GRCh37	7	81372755	81372755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	58	633	0	ENST00000222390.5:c.779G>T	p.Cys260Phe	p.C260F	ENST00000222390	NM_000601.4	260	tGc/tTc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513284	106513284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	28	432	0	ENST00000359195.3:c.2188C>T	p.His730Tyr	p.H730Y	ENST00000359195	NM_002649.2	730	Cac/Tac																																																																														
CRLF2	0	MSKCC	GRCh37	X	1317454	1317454	+	downstream_gene_variant	3'Flank	SNP	G	G	C			P-0019473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	26	887	0				ENST00000381566																																																																																	
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	131	692	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0019474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	195	1150	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
EGFR	0	MSKCC	GRCh37	7	55242444	55242445	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAATTCCCGTCGCTATC			P-0019474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	591	683	0	ENST00000275493.2:c.2217_2234dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	-/AAAATTCCCGTCGCTATC																																																																														
PRKD1	0	MSKCC	GRCh37	14	30093455	30093455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	47	490	0	ENST00000331968.5:c.1808G>A	p.Arg603His	p.R603H	ENST00000331968	NM_002742.2	603	cGt/cAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092809	27092809	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	68	749	0	ENST00000324856.7:c.2830C>G	p.Gln944Glu	p.Q944E	ENST00000324856	NM_006015.4	944	Cag/Gag																																																																														
BLM	0	MSKCC	GRCh37	15	91328192	91328192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	110	541	0	ENST00000355112.3:c.2704G>C	p.Asp902His	p.D902H	ENST00000355112	NM_000057.2	902	Gac/Cac																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	244	448	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	209	954	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NCOR1	0	MSKCC	GRCh37	17	16024505	16024505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	164	699	2	ENST00000268712.3:c.1713delG	p.Arg572GlufsTer18	p.R572Efs*18	ENST00000268712	NM_006311.3	571	ggG/gg																																																																														
BLM	0	MSKCC	GRCh37	15	91306241	91306241	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs12720097		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	171	803	0	ENST00000355112.3:c.1928G>A	p.Arg643His	p.R643H	ENST00000355112	NM_000057.2	643	cGt/cAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	388	863	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	138	485	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	108	526	1	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																														
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	75	325	1	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32180367	32180367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	228	980	2	ENST00000375023.3:c.2564G>A	p.Arg855His	p.R855H	ENST00000375023	NM_004557.3	855	cGc/cAc																																																																														
MYCN	0	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	245	1336	14	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
APC	0	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	143	598	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	362	720	14	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127447	55127447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	281	974	0	ENST00000257290.5:c.235G>A	p.Gly79Ser	p.G79S	ENST00000257290	NM_006206.4	79	Ggc/Agc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	11	158	2	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14629033	14629035	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	210	817	0	ENST00000254322.2:c.127_129del	p.Glu43del	p.E43del	ENST00000254322	NM_006145.1	43	GAG/-																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213912	66213912	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	126	600	1	ENST00000273854.3:c.2518del	p.Ile840PhefsTer11	p.I840Ffs*11	ENST00000273854	NM_004439.5	840	Att/tt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	204	951	4	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	387	668	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
REL	0	MSKCC	GRCh37	2	61149655	61149656	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	41	232	0	ENST00000295025.8:c.1851dup	p.Gln618SerfsTer8	p.Q618Sfs*8	ENST00000295025	NM_002908.2	615	-/T																																																																														
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	95	710	0	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																																																														
SYK	0	MSKCC	GRCh37	9	93606273	93606273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	251	1013	6	ENST00000375746.1:c.98delG	p.Gly33AlafsTer2	p.G33Afs*2	ENST00000375746	NM_001174167.1	31	caG/ca																																																																														
MGA	0	MSKCC	GRCh37	15	42042300	42042301	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	53	879	0	ENST00000219905.7:c.6499_6500del	p.Leu2167GlyfsTer27	p.L2167Gfs*27	ENST00000219905	NM_001164273.1	2165	gaCTct/gact																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	260	1081	1	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																														
EP300	0	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	615	1149	2	ENST00000263253.7:c.6970delC	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																														
ESR1	0	MSKCC	GRCh37	6	152201885	152201885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	161	686	1	ENST00000206249.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000206249	NM_000125.3	247	Gaa/Aaa																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870961	12870962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	139	550	0	ENST00000228872.4:c.192dup	p.Gln65SerfsTer60	p.Q65Sfs*60	ENST00000228872	NM_004064.3	63	gat/gaTt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563349	21563349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	750	1471	1	ENST00000382592.4:c.570del	p.Tyr191ThrfsTer49	p.Y191Tfs*49	ENST00000382592	NM_014572.2	190	ccC/cc																																																																														
TET2	0	MSKCC	GRCh37	4	106190900	106190900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	105	436	0	ENST00000380013.4:c.4178C>T	p.Thr1393Ile	p.T1393I	ENST00000380013	NM_001127208.2	1393	aCa/aTa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533939	63533942	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	128	561	0	ENST00000307078.5:c.1212_1215del	p.Glu405AlafsTer52	p.E405Afs*52	ENST00000307078	NM_004655.3	404	agAGAG/ag																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5212230	5212230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367918810		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	188	767	0	ENST00000357368.4:c.4801G>A	p.Val1601Ile	p.V1601I	ENST00000357368	NM_002850.3	1601	Gtc/Atc																																																																														
MLH1	0	MSKCC	GRCh37	3	37070324	37070324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	161	685	2	ENST00000231790.2:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000231790	NM_000249.3	487	Cga/Tga																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	186	730	9	ENST00000289153.2:c.1810delC	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186507012	186507012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	116	385	0	ENST00000323963.5:c.1178A>G	p.Asn393Ser	p.N393S	ENST00000323963		393	aAt/aGt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	436	1056	11	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	217	897	11	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
EPAS1	0	MSKCC	GRCh37	2	46609673	46609673	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	546	1223	3	ENST00000263734.3:c.2402delC	p.Pro801HisfsTer39	p.P801Hfs*39	ENST00000263734	NM_001430.4	799	ttC/tt																																																																														
PPARG	5468	MSKCC	GRCh37	3	12458270	12458270	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	204	856	0	ENST00000287820.6:c.892del	p.Leu298CysfsTer38	p.L298Cfs*38	ENST00000287820	NM_015869.4	296	aCc/ac																																																																														
CYLD	0	MSKCC	GRCh37	16	50825539	50825539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	148	792	2	ENST00000398568.2:c.2170G>A	p.Val724Ile	p.V724I	ENST00000398568	NM_001042412.1	724	Gtt/Att																																																																														
INPP4B	0	MSKCC	GRCh37	4	143007331	143007332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	150	586	1	ENST00000262992.4:c.2452dupA	p.Arg818LysfsTer26	p.R818Kfs*26	ENST00000262992	NM_001101669.1	818	aga/aAga																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31526755	31526755	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	231	972	0	ENST00000344624.3:c.285del	p.Cys96AlafsTer12	p.C96Afs*12	ENST00000344624		95	ccC/cc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9782409	9782409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	297	1172	1	ENST00000377346.4:c.2342G>A	p.Gly781Glu	p.G781E	ENST00000377346	NM_005026.3	781	gGg/gAg																																																																														
MTOR	0	MSKCC	GRCh37	1	11169741	11169741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	224	819	0	ENST00000361445.4:c.7412C>T	p.Thr2471Met	p.T2471M	ENST00000361445	NM_004958.3	2471	aCg/aTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11297986	11297986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	277	977	2	ENST00000361445.4:c.2122C>T	p.Arg708Trp	p.R708W	ENST00000361445	NM_004958.3	708	Cgg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16258750	16258750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	205	856	0	ENST00000375759.3:c.6015G>T	p.Lys2005Asn	p.K2005N	ENST00000375759	NM_015001.2	2005	aaG/aaT																																																																														
CSF3R	0	MSKCC	GRCh37	1	36933744	36933744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	332	1200	0	ENST00000361632.4:c.1655C>T	p.Pro552Leu	p.P552L	ENST00000361632		552	cCt/cTt																																																																														
PARP1	0	MSKCC	GRCh37	1	226568823	226568823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	76	1100	1	ENST00000366794.5:c.1246G>A	p.Gly416Arg	p.G416R	ENST00000366794	NM_001618.3	416	Ggg/Agg																																																																														
RET	0	MSKCC	GRCh37	10	43596095	43596095	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs141679950		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	209	983	0	ENST00000355710.3:c.262A>G	p.Ile88Val	p.I88V	ENST00000355710	NM_020975.4	88	Atc/Gtc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852117	63852118	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	173	846	0	ENST00000279873.7:c.2901dup	p.Tyr968IlefsTer3	p.Y968Ifs*3	ENST00000279873	NM_032199.2	965	-/A																																																																														
FGFR2	0	MSKCC	GRCh37	10	123276974	123276974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	122	452	0	ENST00000358487.5:c.943G>A	p.Ala315Thr	p.A315T	ENST00000358487	NM_000141.4	315	Gcc/Acc																																																																														
IGF2	0	MSKCC	GRCh37	11	2154792	2154792	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	191	1400	0	ENST00000434045.2:c.429delC	p.Ala144ProfsTer71	p.A144Pfs*71	ENST00000434045	NM_001127598.1	143	ccC/cc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64132906	64132907	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	262	947	0	ENST00000334205.4:c.1046dup	p.Pro350ThrfsTer20	p.P350Tfs*20	ENST00000334205	NM_003942.2	347	agc/agCc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118377024	118377024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	151	644	0	ENST00000534358.1:c.10417C>T	p.Arg3473Cys	p.R3473C	ENST00000534358	NM_005933.3	3473	Cgt/Tgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436042	49436042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	43	678	0	ENST00000301067.7:c.5939C>T	p.Thr1980Met	p.T1980M	ENST00000301067	NM_003482.3	1980	aCg/aTg																																																																														
GLI1	0	MSKCC	GRCh37	12	57858581	57858581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	267	1001	1	ENST00000228682.2:c.319G>A	p.Val107Ile	p.V107I	ENST00000228682	NM_005269.2	107	Gta/Ata																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856545	111856545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	91	452	0	ENST00000341259.2:c.596C>T	p.Ala199Val	p.A199V	ENST00000341259	NM_005475.2	199	gCg/gTg																																																																														
POLE	0	MSKCC	GRCh37	12	133225594	133225594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	251	946	2	ENST00000320574.5:c.4070G>A	p.Cys1357Tyr	p.C1357Y	ENST00000320574	NM_006231.2	1357	tGc/tAc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32953905	32953905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	101	625	0	ENST00000380152.3:c.8972G>A	p.Arg2991His	p.R2991H	ENST00000380152		2991	cGt/cAt																																																																														
RB1	0	MSKCC	GRCh37	13	48937023	48937023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	70	726	0	ENST00000267163.4:c.791C>T	p.Ala264Val	p.A264V	ENST00000267163	NM_000321.2	264	gCa/gTa																																																																														
DIS3	0	MSKCC	GRCh37	13	73335526	73335526	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	53	559	0	ENST00000377767.4:c.2645A>C	p.Asn882Thr	p.N882T	ENST00000377767	NM_014953.3	882	aAc/aCc																																																																														
DICER1	0	MSKCC	GRCh37	14	95590812	95590812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	125	584	0	ENST00000343455.3:c.1097C>T	p.Ala366Val	p.A366V	ENST00000343455	NM_177438.2	366	gCc/gTc																																																																														
DICER1	0	MSKCC	GRCh37	14	95593021	95593021	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	209	915	0	ENST00000343455.3:c.799T>C	p.Tyr267His	p.Y267H	ENST00000343455	NM_177438.2	267	Tat/Cat																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43772200	43772200	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	239	968	0	ENST00000382044.4:c.515A>G	p.Gln172Arg	p.Q172R	ENST00000382044	NM_001141980.1	172	cAg/cGg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457615	67457615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	223	909	0	ENST00000327367.4:c.425G>A	p.Arg142His	p.R142H	ENST00000327367	NM_005902.3	142	cGc/cAc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99250823	99250823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	209	649	0	ENST00000268035.6:c.127T>C	p.Tyr43His	p.Y43H	ENST00000268035	NM_000875.3	43	Tat/Cat																																																																														
TSC2	0	MSKCC	GRCh37	16	2111956	2111956	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	249	982	1	ENST00000219476.3:c.1204G>T	p.Gly402Trp	p.G402W	ENST00000219476	NM_000548.3	402	Ggg/Tgg																																																																														
TRAF7	0	MSKCC	GRCh37	16	2213997	2213997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	51	1010	0	ENST00000326181.6:c.76A>G	p.Thr26Ala	p.T26A	ENST00000326181	NM_032271.2	26	Aca/Gca																																																																														
SOCS1	0	MSKCC	GRCh37	16	11348740	11348740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	305	1087	2	ENST00000332029.2:c.596T>C	p.Val199Ala	p.V199A	ENST00000332029	NM_003745.1	199	gTc/gCc																																																																														
MAPK3	0	MSKCC	GRCh37	16	30134505	30134505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	67	379	0	ENST00000263025.4:c.26del	p.Gly9AlafsTer23	p.G9Afs*23	ENST00000263025	NM_002746.2	9	gGc/gc																																																																														
NUP93	0	MSKCC	GRCh37	16	56865798	56865798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	131	471	0	ENST00000308159.5:c.1130G>T	p.Arg377Met	p.R377M	ENST00000308159	NM_014669.4	377	aGg/aTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827231	72827231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	166	780	1	ENST00000268489.5:c.9350C>T	p.Ala3117Val	p.A3117V	ENST00000268489	NM_006885.3	3117	gCg/gTg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944133	81944133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	176	729	1	ENST00000359376.3:c.1742G>A	p.Gly581Asp	p.G581D	ENST00000359376	NM_002661.3	581	gGc/gAc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15965104	15965104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	124	551	1	ENST00000268712.3:c.5492C>T	p.Ala1831Val	p.A1831V	ENST00000268712	NM_006311.3	1831	gCa/gTa																																																																														
NF1	0	MSKCC	GRCh37	17	29548875	29548875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	146	987	1	ENST00000358273.4:c.1649T>C	p.Leu550Pro	p.L550P	ENST00000358273	NM_001042492.2	550	cTg/cCg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602901	10602901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	391	1264	0	ENST00000171111.5:c.677G>A	p.Cys226Tyr	p.C226Y	ENST00000171111	NM_203500.1	226	tGc/tAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11169552	11169552	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	148	930	0	ENST00000344626.4:c.4622T>C	p.Leu1541Pro	p.L1541P	ENST00000344626	NM_003072.3	1541	cTg/cCg																																																																														
CALR	0	MSKCC	GRCh37	19	13049513	13049513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	59	970	0	ENST00000316448.5:c.20T>C	p.Leu7Pro	p.L7P	ENST00000316448	NM_004343.3	7	cTg/cCg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	59	1039	2	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																														
POLD1	0	MSKCC	GRCh37	19	50906476	50906476	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	253	1128	1	ENST00000440232.2:c.1137G>T	p.Gln379His	p.Q379H	ENST00000440232	NM_002691.3	379	caG/caT																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	240	912	7	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
MYCN	0	MSKCC	GRCh37	2	16085794	16085794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	89	801	0	ENST00000281043.3:c.970C>A	p.Leu324Ile	p.L324I	ENST00000281043	NM_005378.4	324	Ctt/Att																																																																														
ALK	0	MSKCC	GRCh37	2	29430040	29430040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	199	908	0	ENST00000389048.3:c.3935C>T	p.Thr1312Ile	p.T1312I	ENST00000389048	NM_004304.4	1312	aCa/aTa																																																																														
EPCAM	0	MSKCC	GRCh37	2	47606137	47606138	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	65	827	0	ENST00000263735.4:c.607dup	p.Thr203AsnfsTer4	p.T203Nfs*4	ENST00000263735	NM_002354.2	201	caa/cAaa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198264800	198264800	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	184	794	0	ENST00000335508.6:c.2992A>C	p.Lys998Gln	p.K998Q	ENST00000335508	NM_012433.2	998	Aag/Cag																																																																														
CASP8	0	MSKCC	GRCh37	2	202149674	202149674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	200	776	0	ENST00000358485.4:c.1115G>A	p.Cys372Tyr	p.C372Y	ENST00000358485	NM_001080125.1	372	tGt/tAt																																																																														
CTLA4	0	MSKCC	GRCh37	2	204735507	204735507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	105	656	0	ENST00000302823.3:c.308G>A	p.Cys103Tyr	p.C103Y	ENST00000302823	NM_005214.4	103	tGc/tAc																																																																														
TOP1	0	MSKCC	GRCh37	20	39741473	39741473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	187	727	1	ENST00000361337.2:c.1360G>A	p.Val454Met	p.V454M	ENST00000361337	NM_003286.2	454	Gtg/Atg																																																																														
U2AF1	0	MSKCC	GRCh37	21	44514602	44514602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	206	713	0	ENST00000291552.4:c.554T>C	p.Leu185Pro	p.L185P	ENST00000291552	NM_006758.2	185	cTg/cCg																																																																														
NF2	0	MSKCC	GRCh37	22	30050676	30050676	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150667239		P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	182	618	1	ENST00000338641.4:c.478C>T	p.Arg160Trp	p.R160W	ENST00000338641	NM_000268.3	160	Cgg/Tgg																																																																														
RAF1	0	MSKCC	GRCh37	3	12626694	12626694	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	233	850	0	ENST00000251849.4:c.1595A>G	p.Tyr532Cys	p.Y532C	ENST00000251849	NM_002880.3	532	tAc/tGc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732913	30732913	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	41	307	0	ENST00000359013.4:c.1601G>A	p.Gly534Asp	p.G534D	ENST00000359013	NM_001024847.2	534	gGc/gAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47161834	47161834	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	184	603	0	ENST00000409792.3:c.4292T>C	p.Val1431Ala	p.V1431A	ENST00000409792	NM_014159.6	1431	gTa/gCa																																																																														
GSK3B	0	MSKCC	GRCh37	3	119721054	119721054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	240	735	0	ENST00000316626.5:c.121G>A	p.Val41Met	p.V41M	ENST00000316626		41	Gtg/Atg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201768	66201768	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	184	804	0	ENST00000273854.3:c.2734C>G	p.Leu912Val	p.L912V	ENST00000273854	NM_004439.5	912	Ctg/Gtg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31421438	31421438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	167	894	0	ENST00000344624.3:c.3466C>A	p.Leu1156Met	p.L1156M	ENST00000344624		1156	Ctg/Atg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111485	56111485	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	33	239	0	ENST00000399503.3:c.85G>T	p.Gly29Ter	p.G29*	ENST00000399503	NM_005921.1	29	Gga/Tga																																																																														
TAP1	0	MSKCC	GRCh37	6	32815757	32815757	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	295	1172	2	ENST00000354258.4:c.1859del	p.Gly620AspfsTer44	p.G620Dfs*44	ENST00000354258	NM_000593.5	620	gGa/ga																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967242	93967242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	104	480	0	ENST00000369303.4:c.2111-1G>A		p.X704_splice	ENST00000369303	NM_004440.3	704																																																																															
CARD11	0	MSKCC	GRCh37	7	2963981	2963981	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	208	838	0	ENST00000396946.4:c.1826A>G	p.Tyr609Cys	p.Y609C	ENST00000396946	NM_032415.4	609	tAc/tGc																																																																														
ETV1	0	MSKCC	GRCh37	7	13971277	13971277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	40	701	0	ENST00000405192.2:c.652C>T	p.Pro218Ser	p.P218S	ENST00000405192	NM_001163147.1	218	Cca/Tca																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509670	106509670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	197	748	0	ENST00000359195.3:c.1664T>C	p.Leu555Ser	p.L555S	ENST00000359195	NM_002649.2	555	tTg/tCg																																																																														
PREX2	0	MSKCC	GRCh37	8	69046312	69046312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	123	554	0	ENST00000288368.4:c.3785G>A	p.Arg1262His	p.R1262H	ENST00000288368	NM_024870.2	1262	cGt/cAt																																																																														
JAK2	0	MSKCC	GRCh37	9	5090509	5090509	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	145	760	0	ENST00000381652.3:c.2829del	p.Lys943AsnfsTer6	p.K943Nfs*6	ENST00000381652	NM_004972.3	942	cAa/ca																																																																														
JAK2	0	MSKCC	GRCh37	9	5090859	5090859	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	87	425	0	ENST00000381652.3:c.3007C>T	p.Gln1003Ter	p.Q1003*	ENST00000381652	NM_004972.3	1003	Caa/Taa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402784	139402784	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	338	1196	0	ENST00000277541.6:c.3225G>A	p.Trp1075Ter	p.W1075*	ENST00000277541	NM_017617.3	1075	tgG/tgA																																																																														
RBM10	0	MSKCC	GRCh37	X	47040933	47040933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	301	636	0	ENST00000329236.7:c.1229C>T	p.Ala410Val	p.A410V	ENST00000329236	NM_001204466.1	410	gCc/gTc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412657	63412657	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	179	419	0	ENST00000330258.3:c.510del	p.Gly171AlafsTer38	p.G171Afs*38	ENST00000330258	NM_152424.3	170	aaA/aa																																																																														
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	283	819	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
ATRX	0	MSKCC	GRCh37	X	76889108	76889108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	59	879	2	ENST00000373344.5:c.4902G>T	p.Trp1634Cys	p.W1634C	ENST00000373344	NM_000489.3	1634	tgG/tgT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433273	49433273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	83	966	1	ENST00000301067.7:c.8174G>T	p.Ser2725Ile	p.S2725I	ENST00000301067	NM_003482.3	2725	aGc/aTc																																																																														
FLT1	0	MSKCC	GRCh37	13	28897032	28897032	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	44	676	0	ENST00000282397.4:c.2848G>T	p.Glu950Ter	p.E950*	ENST00000282397	NM_002019.4	950	Gaa/Taa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911251	32911251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	189	1020	1	ENST00000380152.3:c.2759C>T	p.Pro920Leu	p.P920L	ENST00000380152		920	cCc/cTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276327	15276327	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	180	925	0	ENST00000263388.2:c.5668-1G>T		p.X1890_splice	ENST00000263388	NM_000435.2	1890																																																																															
ASXL1	0	MSKCC	GRCh37	20	31019286	31019286	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	52	509	0	ENST00000375687.4:c.881A>T	p.Gln294Leu	p.Q294L	ENST00000375687	NM_015338.5	294	cAg/cTg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589014	67589014	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	35	438	0	ENST00000274335.5:c.1105A>T	p.Thr369Ser	p.T369S	ENST00000274335		369	Act/Tct																																																																														
ATRX	0	MSKCC	GRCh37	X	76953089	76953089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	90	973	0	ENST00000373344.5:c.224G>T	p.Gly75Val	p.G75V	ENST00000373344	NM_000489.3	75	gGa/gTa																																																																														
XIAP	0	MSKCC	GRCh37	X	123020030	123020030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	107	974	1	ENST00000355640.3:c.518G>T	p.Trp173Leu	p.W173L	ENST00000355640		173	tGg/tTg																																																																														
MDC1	0	MSKCC	GRCh37	6	30671930	30671934	+	missense_variant	Missense_Mutation	ONP	TGAGC	TGAGC	AGAGC			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	39	1003	1	ENST00000376406.3:c.5030delAinsT	p.Gln1677Leu	p.Q1677L	ENST00000376406	NM_014641.2	1677	GCTCAg/GCTCTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692962	89692964	+	stop_gained	Nonsense_Mutation	ONP	AAG	AAG	CAT			P-0019485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	56	868	1	ENST00000371953.3:c.446_448delinsCAT	p.Gln149_Glu150delinsProTer	p.Q149_E150delinsP*	ENST00000371953	NM_000314.4	149	cAAGag/cCATag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	162	915	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	228	887	1	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	148	483	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
AXL	0	MSKCC	GRCh37	19	41743948	41743948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	403	1244	0	ENST00000301178.4:c.883C>T	p.Arg295Trp	p.R295W	ENST00000301178	NM_021913.4	295	Cgg/Tgg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981777	201981777	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	55	870	0	ENST00000359651.3:c.488del	p.Ser163ThrfsTer91	p.S163Tfs*91	ENST00000359651		163	aGc/ac																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710600	114710601	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	271	764	2	ENST00000543371.1:c.86dup	p.Lys30GlufsTer14	p.K30Efs*14	ENST00000543371	NM_001198531.1	29	gag/gAag																																																																														
UPF1	0	MSKCC	GRCh37	19	18962981	18962981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	411	1351	2	ENST00000262803.5:c.848C>T	p.Pro283Leu	p.P283L	ENST00000262803	NM_002911.3	283	cCg/cTg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022400	31022422	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCACCACTGCCATAGAGAGGC	GGTCACCACTGCCATAGAGAGGC	-			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	157	296	0	ENST00000375687.4:c.1887_1909del	p.Glu635ArgfsTer15	p.E635Rfs*15	ENST00000375687	NM_015338.5	629	GGTCACCACTGCCATAGAGAGGCg/g																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265614	41266221	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTC	CTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTC	-			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	218	478	0	ENST00000349496.5:c.13+46_222del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
PPP4R2	0	MSKCC	GRCh37	3	73114222	73114222	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	195	521	0	ENST00000356692.5:c.858C>G	p.Asp286Glu	p.D286E	ENST00000356692		286	gaC/gaG																																																																														
HGF	0	MSKCC	GRCh37	7	81340836	81340836	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	60	394	0	ENST00000222390.5:c.1406-1G>A		p.X469_splice	ENST00000222390	NM_000601.4	469																																																																															
KDM5C	0	MSKCC	GRCh37	X	53246429	53246429	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	300	434	0	ENST00000375401.3:c.553G>T	p.Glu185Ter	p.E185*	ENST00000375401	NM_004187.3	185	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	107	806	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CDK12	0	MSKCC	GRCh37	17	37672059	37672059	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0019489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	58	587	0	ENST00000447079.4:c.2844C>G	p.Ile948Met	p.I948M	ENST00000447079	NM_015083.1	948	atC/atG																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	211	865	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	177	704	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945351	151945352	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0019491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	34	271	0	ENST00000262189.6:c.2167_2168del	p.Glu723LysfsTer8	p.E723Kfs*8	ENST00000262189	NM_170606.2	723	GAa/a																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945396	151945403	+	frameshift_variant	Frame_Shift_Del	DEL	GAAATACT	GAAATACT	CAAAACC			P-0019491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	98	905	0	ENST00000262189.6:c.2116_2123delinsGGTTTTG	p.Ser706GlyfsTer12	p.S706Gfs*12	ENST00000262189	NM_170606.2	706	AGTATTTCa/GGTTTTGa																																																																														
PTEN	0	MSKCC	GRCh37	10	89720676	89720676	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	41	381	0	ENST00000371953.3:c.827A>C	p.Asn276Thr	p.N276T	ENST00000371953	NM_000314.4	276	aAt/aCt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115982	8115983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	29	313	0	ENST00000346208.3:c.1330dupT	p.Ter444LeufsTer63	p.*444Lfs*63	ENST00000346208		443	ggt/ggTt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	121	884	1	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
MCL1	0	MSKCC	GRCh37	1	150551708	150551708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	40	371	1	ENST00000369026.2:c.299C>T	p.Ala100Val	p.A100V	ENST00000369026	NM_021960.4	100	gCg/gTg																																																																														
CDH1	0	MSKCC	GRCh37	16	68844120	68844142	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCAACGGGAATGCAGTTGAGG	ATCCAACGGGAATGCAGTTGAGG	-			P-0019493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	103	656	0	ENST00000261769.5:c.714_736del	p.Asn240AspfsTer10	p.N240Dfs*10	ENST00000261769	NM_004360.3	236	tcATCCAACGGGAATGCAGTTGAGGat/tcat																																																																														
BRCA1	0	MSKCC	GRCh37	17	41219665	41219665	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	111	643	0	ENST00000357654.3:c.5034T>G	p.Asn1678Lys	p.N1678K	ENST00000357654	NM_007294.3	1678	aaT/aaG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	25	759	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	95	689	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
RAD51	0	MSKCC	GRCh37	15	41021774	41021774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	34	575	0	ENST00000267868.3:c.716C>T	p.Ser239Leu	p.S239L	ENST00000267868	NM_002875.4	239	tCa/tTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	69	741	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
FGFR2	0	MSKCC	GRCh37	10	123325189	123325189	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	58	620	0	ENST00000358487.5:c.139C>G	p.Pro47Ala	p.P47A	ENST00000358487	NM_000141.4	47	Cca/Gca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420906	49420906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	46	733	0	ENST00000301067.7:c.14843C>T	p.Ser4948Leu	p.S4948L	ENST00000301067	NM_003482.3	4948	tCa/tTa																																																																														
AKT1	0	MSKCC	GRCh37	14	105243108	105243108	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	66	746	0	ENST00000349310.3:c.176-1G>A		p.X59_splice	ENST00000349310	NM_001014432.1	59																																																																															
KEAP1	0	MSKCC	GRCh37	19	10610225	10610225	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	57	936	0	ENST00000171111.5:c.485A>T	p.Tyr162Phe	p.Y162F	ENST00000171111	NM_203500.1	162	tAc/tTc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212293191	212293191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	29	564	1	ENST00000342788.4:c.2661G>T	p.Met887Ile	p.M887I	ENST00000342788	NM_005235.2	887	atG/atT																																																																														
INPP4B	0	MSKCC	GRCh37	4	143067099	143067099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	34	613	0	ENST00000262992.4:c.1614G>T	p.Met538Ile	p.M538I	ENST00000262992	NM_001101669.1	538	atG/atT																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527796	157527796	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	27	534	0	ENST00000346085.5:c.5522del	p.Pro1841LeufsTer10	p.P1841Lfs*10	ENST00000346085	NM_020732.3	1841	Cct/ct																																																																														
CARD11	0	MSKCC	GRCh37	7	2979529	2979529	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	56	663	0	ENST00000396946.4:c.718G>T	p.Glu240Ter	p.E240*	ENST00000396946	NM_032415.4	240	Gag/Tag																																																																														
PAX5	0	MSKCC	GRCh37	9	37006472	37006472	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	27	410	0	ENST00000358127.4:c.473T>C	p.Ile158Thr	p.I158T	ENST00000358127	NM_001280556.1	158	aTa/aCa																																																																														
BCOR	0	MSKCC	GRCh37	X	39914675	39914675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	37	859	0	ENST00000378444.4:c.4687G>T	p.Gly1563Cys	p.G1563C	ENST00000378444	NM_001123385.1	1563	Ggt/Tgt																																																																														
AMER1	0	MSKCC	GRCh37	X	63409824	63409824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	42	570	0	ENST00000330258.3:c.3343G>A	p.Glu1115Lys	p.E1115K	ENST00000330258	NM_152424.3	1115	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	243	516	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
BAP1	0	MSKCC	GRCh37	3	52440379	52440379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	174	446	0	ENST00000460680.1:c.673G>A	p.Asp225Asn	p.D225N	ENST00000460680	NM_004656.3	225	Gac/Aac																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	220	769	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa																																																																														
CCND2	0	MSKCC	GRCh37	12	4387983	4387983	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	169	652	0	ENST00000261254.3:c.469C>G	p.His157Asp	p.H157D	ENST00000261254	NM_001759.3	157	Cat/Gat																																																																														
REL	0	MSKCC	GRCh37	2	61148994	61148994	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	83	478	0	ENST00000295025.8:c.1184C>G	p.Ser395Ter	p.S395*	ENST00000295025	NM_002908.2	395	tCa/tGa																																																																														
REL	0	MSKCC	GRCh37	2	61149237	61149237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	50	382	1	ENST00000295025.8:c.1427C>T	p.Ser476Phe	p.S476F	ENST00000295025	NM_002908.2	476	tCc/tTc																																																																														
REL	0	MSKCC	GRCh37	2	61149285	61149285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	46	373	0	ENST00000295025.8:c.1475C>G	p.Ser492Cys	p.S492C	ENST00000295025	NM_002908.2	492	tCt/tGt																																																																														
REL	0	MSKCC	GRCh37	2	61149387	61149387	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019496-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	91	499	1	ENST00000295025.8:c.1577C>A	p.Ser526Ter	p.S526*	ENST00000295025	NM_002908.2	526	tCa/tAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	124	786	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
RHOA	0	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	106	845	0	ENST00000418115.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000418115	NM_001664.2	42	tAt/tGt																																																																														
CCND2	0	MSKCC	GRCh37	12	4409117	4409117	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	72	518	1	ENST00000261254.3:c.812C>A	p.Ser271Ter	p.S271*	ENST00000261254	NM_001759.3	271	tCg/tAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420700	49420703	+	frameshift_variant	Frame_Shift_Del	DEL	CAAG	CAAG	AAT			P-0019499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	87	675	2	ENST00000301067.7:c.15046_15049delinsATT	p.Leu5016IlefsTer35	p.L5016Ifs*35	ENST00000301067	NM_003482.3	5016	CTTGgc/ATTgc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15938117	15938117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	23	302	1	ENST00000268712.3:c.7097C>T	p.Thr2366Met	p.T2366M	ENST00000268712	NM_006311.3	2366	aCg/aTg																																																																														
NF1	0	MSKCC	GRCh37	17	29685568	29685568	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019499-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	36	711	0	ENST00000358273.4:c.8041A>T	p.Ile2681Phe	p.I2681F	ENST00000358273	NM_001042492.2	2681	Atc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	390	598	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435153	110435153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3877	268	823	1	ENST00000375856.3:c.3248C>T	p.Pro1083Leu	p.P1083L	ENST00000375856	NM_003749.2	1083	cCg/cTg																																																																														
TSC1	7248	MSKCC	GRCh37	9	135771987	135771988	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs118203743		P-0019500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	58	301	0	ENST00000298552.3:c.3127_3129dup	p.Ser1043dup	p.S1043dup	ENST00000298552	NM_001162426.1	1043	-/AGC																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138110	64138110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	211	653	0	ENST00000334205.4:c.2033G>A	p.Ser678Asn	p.S678N	ENST00000334205	NM_003942.2	678	aGc/aAc																																																																														
IRS1	0	MSKCC	GRCh37	2	227662662	227662662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	154	543	1	ENST00000305123.5:c.793C>T	p.Arg265Cys	p.R265C	ENST00000305123	NM_005544.2	265	Cgc/Tgc																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858566	27858566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	41	185	0	ENST00000359303.2:c.5C>T	p.Ala2Val	p.A2V	ENST00000359303	NM_003535.2	2	gCc/gTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	510	1106	2	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944983	31944983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	282	863	1	ENST00000340398.3:c.118C>T	p.Arg40Cys	p.R40C	ENST00000340398	NM_001013699.2	40	Cgc/Tgc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9778897	9778897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	150	844	3	ENST00000377346.4:c.1166G>A	p.Arg389His	p.R389H	ENST00000377346	NM_005026.3	389	cGt/cAt																																																																														
RAD51C	0	MSKCC	GRCh37	17	56787349	56787349	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0019501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	31	442	0	ENST00000337432.4:c.835G>C	p.Ala279Pro	p.A279P	ENST00000337432	NM_058216.2	279	Gct/Cct																																																																														
TET2	0	MSKCC	GRCh37	4	106156298	106156303	+	inframe_deletion	In_Frame_Del	DEL	CACCAT	CACCAT	-			P-0019501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	37	411	0	ENST00000380013.4:c.1202_1207del	p.Pro401_Ser402del	p.P401_S402del	ENST00000380013	NM_001127208.2	400	cCACCATca/cca																																																																														
TAP1	0	MSKCC	GRCh37	6	32815827	32815827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	168	771	1	ENST00000354258.4:c.1789G>T	p.Val597Leu	p.V597L	ENST00000354258	NM_000593.5	597	Gtg/Ttg																																																																														
INHBA	0	MSKCC	GRCh37	7	41739594	41739594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	149	543	0	ENST00000242208.4:c.379G>T	p.Ala127Ser	p.A127S	ENST00000242208	NM_002192.2	127	Gcc/Tcc																																																																														
MEN1	0	MSKCC	GRCh37	11	64574675	64574675	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	247	667	0	ENST00000337652.1:c.815T>G	p.Leu272Arg	p.L272R	ENST00000337652	NM_130803.2	272	cTc/cGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	41	541	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727454	66727454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	24	445	0	ENST00000307102.5:c.170A>C	p.Lys57Thr	p.K57T	ENST00000307102	NM_002755.3	57	aAg/aCg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453148	140453148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	39	462	0	ENST00000288602.6:c.1787G>T	p.Gly596Val	p.G596V	ENST00000288602	NM_004333.4	596	gGt/gTt																																																																														
POLE	0	MSKCC	GRCh37	12	133219164	133219164	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	67	759	0	ENST00000320574.5:c.4880A>G	p.His1627Arg	p.H1627R	ENST00000320574	NM_006231.2	1627	cAt/cGt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991332	72991332	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	47	463	0	ENST00000268489.5:c.2713G>C	p.Ala905Pro	p.A905P	ENST00000268489	NM_006885.3	905	Gct/Cct																																																																														
DOT1L	0	MSKCC	GRCh37	19	2207642	2207642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	89	760	0	ENST00000398665.3:c.926C>A	p.Pro309Gln	p.P309Q	ENST00000398665	NM_032482.2	309	cCa/cAa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152118	11152118	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	58	599	0	ENST00000344626.4:c.4306G>T	p.Glu1436Ter	p.E1436*	ENST00000344626	NM_003072.3	1436	Gag/Tag																																																																														
SOX17	0	MSKCC	GRCh37	8	55372482	55372500	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACGGGGCCATTTCCTC	GCCACGGGGCCATTTCCTC	-			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	120	1227	0	ENST00000297316.4:c.1173_1191del	p.Ser391ArgfsTer57	p.S391Rfs*57	ENST00000297316	NM_022454.3	391	aGCCACGGGGCCATTTCCTCg/ag																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964431	70964431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	44	490	0	ENST00000276594.2:c.1597G>T	p.Asp533Tyr	p.D533Y	ENST00000276594	NM_024504.3	533	Gac/Tac																																																																														
AMER1	0	MSKCC	GRCh37	X	63411175	63411175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	77	499	0	ENST00000330258.3:c.1992G>T	p.Met664Ile	p.M664I	ENST00000330258	NM_152424.3	664	atG/atT																																																																														
STAG2	0	MSKCC	GRCh37	X	123229279	123229279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	32	348	0	ENST00000218089.9:c.3763G>A	p.Ala1255Thr	p.A1255T	ENST00000218089	NM_001042749.1	1255	Gct/Act																																																																														
RICTOR	0	MSKCC	GRCh37	5	38947395	38947395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	984	407	0	ENST00000357387.3:c.4285C>T	p.Leu1429Phe	p.L1429F	ENST00000357387	NM_152756.3	1429	Ctc/Ttc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38947491	38947491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	1091	426	1	ENST00000357387.3:c.4189C>T	p.Pro1397Ser	p.P1397S	ENST00000357387	NM_152756.3	1397	Cct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	79	567	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	54	338	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
FGF4	0	MSKCC	GRCh37	11	69588869	69588869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	31	586	2	ENST00000168712.1:c.367C>T	p.Arg123Trp	p.R123W	ENST00000168712	NM_002007.2	123	Cgg/Tgg																																																																														
FAM58A	0	MSKCC	GRCh37	X	152864420	152864420	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	21	271	0	ENST00000406277.2:c.106G>A	p.Gly36Ser	p.G36S	ENST00000406277	NM_152274.4	36	Ggt/Agt																																																																														
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0019513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	331	906	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
TP53	0	MSKCC	GRCh37	17	7572988	7572988	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	159	565	0	ENST00000269305.4:c.1121del	p.Gly374ValfsTer48	p.G374Vfs*48	ENST00000269305	NM_001126112.2	374	gGt/gt																																																																														
ALK	0	MSKCC	GRCh37	2	29443631	29443631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	281	824	0	ENST00000389048.3:c.3586C>A	p.Leu1196Met	p.L1196M	ENST00000389048	NM_004304.4	1196	Ctg/Atg																																																																														
ERG	0	MSKCC	GRCh37	21	39763610	39763610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	160	560	0	ENST00000288319.7:c.842C>G	p.Pro281Arg	p.P281R	ENST00000288319	NM_182918.3	281	cCc/cGc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509031	106509031	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	476	583	0	ENST00000359195.3:c.1025A>C	p.His342Pro	p.H342P	ENST00000359195	NM_002649.2	342	cAc/cCc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391214	89391214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	30	382	0	ENST00000336596.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000336596	NM_005233.5	427	gCg/gTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385222	41385222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	50	661	1	ENST00000373198.4:c.739C>T	p.Arg247Cys	p.R247C	ENST00000373198	NM_133170.3	247	Cgc/Tgc																																																																														
MSH3	0	MSKCC	GRCh37	5	79970914	79970915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	227	1080	7	ENST00000265081.6:c.1148dupA	p.Asn385GlnfsTer19	p.N385Qfs*19	ENST00000265081	NM_002439.4	380	-/A																																																																														
RAD54L	0	MSKCC	GRCh37	1	46733212	46733212	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	146	779	0	ENST00000371975.4:c.973G>T	p.Gly325Ter	p.G325*	ENST00000371975	NM_003579.3	325	Gga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25380246	25380246	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	88	742	0	ENST00000256078.4:c.212A>G	p.Tyr71Cys	p.Y71C	ENST00000256078	NM_033360.2	71	tAc/tGc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30107994	30107994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	62	801	1	ENST00000331968.5:c.813C>A	p.His271Gln	p.H271Q	ENST00000331968	NM_002742.2	271	caC/caA																																																																														
TP53	0	MSKCC	GRCh37	17	7579348	7579349	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGA			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	263	845	0	ENST00000269305.4:c.338_339insTCTT	p.His115LeufsTer35	p.H115Lfs*35	ENST00000269305	NM_001126112.2	113	ttc/ttTCTTc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867148	45867148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	49	846	2	ENST00000391945.4:c.971G>A	p.Arg324His	p.R324H	ENST00000391945	NM_000400.3	324	cGc/cAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47163575	47163575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	22	365	0	ENST00000409792.3:c.2551G>T	p.Glu851Ter	p.E851*	ENST00000409792	NM_014159.6	851	Gaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112162882	112162883	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0019514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	128	701	0	ENST00000257430.4:c.1488_1489del	p.Leu497LysfsTer39	p.L497Kfs*39	ENST00000257430	NM_000038.5	496	ACa/a																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	26	700	1				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	130	715	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
ATM	0	MSKCC	GRCh37	11	108151839	108151839	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	137	589	0	ENST00000278616.4:c.3520T>C	p.Phe1174Leu	p.F1174L	ENST00000278616	NM_000051.3	1174	Ttt/Ctt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49422663	49422663	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	212	765	0	ENST00000301067.7:c.14330del	p.Gly4777AlafsTer20	p.G4777Afs*20	ENST00000301067	NM_003482.3	4777	gGc/gc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427950	49427950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	104	689	1	ENST00000301067.7:c.10640G>A	p.Arg3547His	p.R3547H	ENST00000301067	NM_003482.3	3547	cGc/cAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923365	9923365	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	39	631	0	ENST00000330684.3:c.1922T>C	p.Phe641Ser	p.F641S	ENST00000330684	NM_001134407.1	641	tTc/tCc																																																																														
TP53	0	MSKCC	GRCh37	17	7577576	7577576	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	124	647	0	ENST00000269305.4:c.705C>G	p.Asn235Lys	p.N235K	ENST00000269305	NM_001126112.2	235	aaC/aaG																																																																														
SOS1	0	MSKCC	GRCh37	2	39249890	39249890	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	180	656	0	ENST00000402219.2:c.1679A>C	p.Gln560Pro	p.Q560P	ENST00000402219	NM_005633.3	560	cAg/cCg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171760	36171760	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	134	274	0	ENST00000300305.3:c.806-1G>C		p.X269_splice	ENST00000300305		269																																																																															
PBRM1	0	MSKCC	GRCh37	3	52610715	52610715	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	70	431	0	ENST00000394830.3:c.3459-1G>A		p.X1153_splice	ENST00000394830	NM_018313.4	1153																																																																															
KMT2C	0	MSKCC	GRCh37	7	151945071	151945071	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	108	831	1	ENST00000262189.6:c.2448C>A	p.Tyr816Ter	p.Y816*	ENST00000262189	NM_170606.2	816	taC/taA																																																																														
GATA3	0	MSKCC	GRCh37	10	8115961	8115964	+	frameshift_variant	Frame_Shift_Del	DEL	CCAG	CCAG	-			P-0019518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	114	338	0	ENST00000346208.3:c.1308_1311del	p.Ser437TrpfsTer37	p.S437Wfs*37	ENST00000346208		436	tCCAGc/tc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350973	89350976	+	frameshift_variant	Frame_Shift_Del	DEL	GTAA	GTAA	-			P-0019518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	404	1228	0	ENST00000301030.4:c.1974_1977del	p.Tyr659AsnfsTer15	p.Y659Nfs*15	ENST00000301030	NM_001256183.1	658	acTTAC/ac																																																																														
EPHB1	0	MSKCC	GRCh37	3	134968233	134968233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	328	798	1	ENST00000398015.3:c.2746G>A	p.Val916Met	p.V916M	ENST00000398015	NM_004441.4	916	Gtg/Atg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	110	691	5	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
MDC1	0	MSKCC	GRCh37	6	30673792	30673792	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	81	703	4	ENST00000376406.3:c.3168G>C	p.Gln1056His	p.Q1056H	ENST00000376406	NM_014641.2	1056	caG/caC																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	319	752	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TSC2	0	MSKCC	GRCh37	16	2126129	2126129	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	373	1005	0	ENST00000219476.3:c.2700C>A	p.Cys900Ter	p.C900*	ENST00000219476	NM_000548.3	900	tgC/tgA																																																																														
XPO1	0	MSKCC	GRCh37	2	61706083	61706083	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	274	731	1	ENST00000401558.2:c.3088A>T	p.Thr1030Ser	p.T1030S	ENST00000401558	NM_003400.3	1030	Act/Tct																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42845361	42845361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	51	832	0	ENST00000398585.3:c.901C>T	p.Pro301Ser	p.P301S	ENST00000398585	NM_001135099.1	301	Ccg/Tcg																																																																														
APC	0	MSKCC	GRCh37	5	112175456	112175457	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	232	318	0	ENST00000257430.4:c.4166_4167del	p.Ser1389CysfsTer5	p.S1389Cfs*5	ENST00000257430	NM_000038.5	1389	TCt/t																																																																														
ESR1	0	MSKCC	GRCh37	6	152265454	152265454	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	110	526	0	ENST00000206249.3:c.907A>G	p.Lys303Glu	p.K303E	ENST00000206249	NM_000125.3	303	Aag/Gag																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5522596	5522596	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	116	617	0	ENST00000397747.3:c.50T>C	p.Ile17Thr	p.I17T	ENST00000397747	NM_025239.3	17	aTa/aCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	93	437	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984846	11984846	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	114	513	0	ENST00000353533.5:c.392A>G	p.Lys131Arg	p.K131R	ENST00000353533	NM_003010.3	131	aAa/aGa																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25458627	25458627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	232	741	0	ENST00000264709.3:c.2546C>A	p.Pro849His	p.P849H	ENST00000264709	NM_175629.2	849	cCt/cAt																																																																														
ASXL2	0	MSKCC	GRCh37	2	25982403	25982403	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	208	464	0	ENST00000435504.4:c.887del	p.Pro296LeufsTer15	p.P296Lfs*15	ENST00000435504		296	cCt/ct																																																																														
MAPK1	0	MSKCC	GRCh37	22	22143071	22143071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019535-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	41	628	0	ENST00000215832.6:c.636G>T	p.Trp212Cys	p.W212C	ENST00000215832	NM_002745.4	212	tgG/tgT																																																																														
EPHA3	0	MSKCC	GRCh37	3	89156906	89156906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019535-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			463	74	744	1	ENST00000336596.2:c.8G>T	p.Cys3Phe	p.C3F	ENST00000336596	NM_005233.5	3	tGt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	64	775	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	58	726	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974813	21974813	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	13	157	0	ENST00000304494.5:c.14del	p.Ala5GlyfsTer21	p.A5Gfs*21	ENST00000304494	NM_000077.4	5	gCg/gg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974813	21974813	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	13	157	0	ENST00000304494.5:c.14del	p.Ala5GlyfsTer21	p.A5Gfs*21	ENST00000304494	NM_000077.4	5	gCg/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	279	657	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	206	648	0				ENST00000310581	NM_198253.2																																																																																
TET1	0	MSKCC	GRCh37	10	70333551	70333551	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	105	593	0	ENST00000373644.4:c.1456A>C	p.Asn486His	p.N486H	ENST00000373644	NM_030625.2	486	Aat/Cat																																																																														
PLCG2	0	MSKCC	GRCh37	16	81916879	81916879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	135	701	0	ENST00000359376.3:c.698C>T	p.Thr233Ile	p.T233I	ENST00000359376	NM_002661.3	233	aCt/aTt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530198	212530198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	64	360	0	ENST00000342788.4:c.1721C>A	p.Pro574His	p.P574H	ENST00000342788	NM_005235.2	574	cCt/cAt																																																																														
TET2	0	MSKCC	GRCh37	4	106157573	106157573	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	167	398	0	ENST00000380013.4:c.2474C>G	p.Ser825Ter	p.S825*	ENST00000380013	NM_001127208.2	825	tCa/tGa																																																																														
RASA1	0	MSKCC	GRCh37	5	86665655	86665655	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	191	458	0	ENST00000274376.6:c.1636C>T	p.Gln546Ter	p.Q546*	ENST00000274376	NM_002890.2	546	Cag/Tag																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911064	29911064	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GATGT			P-0019540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	288	818	0	ENST00000376809.5:c.363delinsGATGT	p.Ile121MetfsTer57	p.I121Mfs*57	ENST00000376809	NM_002116.7	121	atA/atGATGT																																																																														
FLT1	0	MSKCC	GRCh37	13	29005391	29005391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	17	587	0	ENST00000282397.4:c.870C>A	p.Asn290Lys	p.N290K	ENST00000282397	NM_002019.4	290	aaC/aaA																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591247	67591249	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGT	GGT	-			P-0019542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	92	406	0	ENST00000274335.5:c.1748_1750delGGT		p.X583_splice	ENST00000274335		583																																																																															
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	164	568	1	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	103	323	3	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0019542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	80	411	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106983	27106983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	118	334	0	ENST00000324856.7:c.6595delC	p.Leu2199Ter	p.L2199*	ENST00000324856	NM_006015.4	2198	ttC/tt																																																																														
PTEN	0	MSKCC	GRCh37	10	89624263	89624263	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	269	403	0	ENST00000371953.3:c.37A>G	p.Lys13Glu	p.K13E	ENST00000371953	NM_000314.4	13	Aaa/Gaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	105	667	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	151	853	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CARD11	0	MSKCC	GRCh37	7	2962304	2962304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	133	707	0	ENST00000396946.4:c.2233G>A	p.Gly745Ser	p.G745S	ENST00000396946	NM_032415.4	745	Ggc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112175300	112175301	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	92	239	0	ENST00000257430.4:c.4010dup	p.Gln1338AlafsTer4	p.Q1338Afs*4	ENST00000257430	NM_000038.5	1337	ctg/cTtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	104	772	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0019548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	56	428	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																															
GATA3	0	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	47	618	1	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25505430	25505430	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	29	461	1	ENST00000264709.3:c.328C>T	p.Gln110Ter	p.Q110*	ENST00000264709	NM_175629.2	110	Cag/Tag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778781	3778786	+	inframe_deletion	In_Frame_Del	DEL	AATGTT	AATGTT	-			P-0019550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	241	1171	0	ENST00000262367.5:c.6262_6267del	p.Asn2088_Ile2089del	p.N2088_I2089del	ENST00000262367	NM_004380.2	2088	AACATT/-																																																																														
ERCC3	0	MSKCC	GRCh37	2	128047022	128047022	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	45	704	0	ENST00000285398.2:c.713C>G	p.Pro238Arg	p.P238R	ENST00000285398	NM_000122.1	238	cCa/cGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	485	993	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0019552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	85	679	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
ATR	0	MSKCC	GRCh37	3	142269009	142269009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	113	706	1	ENST00000350721.4:c.2941G>A	p.Val981Ile	p.V981I	ENST00000350721	NM_001184.3	981	Gtt/Att																																																																														
AXL	0	MSKCC	GRCh37	19	41726619	41726619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	85	911	1	ENST00000301178.4:c.164G>A	p.Arg55Gln	p.R55Q	ENST00000301178	NM_021913.4	55	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0019553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	62	854	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
MET	0	MSKCC	GRCh37	7	116411902	116411902	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0019553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	230	1091	0	ENST00000397752.3:c.2888-1G>A		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
INSR	0	MSKCC	GRCh37	19	7128926	7128926	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	52	824	0	ENST00000302850.5:c.2882C>G	p.Pro961Arg	p.P961R	ENST00000302850	NM_000208.2	961	cCc/cGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	206	716	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	511	571	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310896	123310896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	177	416	1	ENST00000358487.5:c.532C>T	p.Arg178Cys	p.R178C	ENST00000358487	NM_000141.4	178	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057967	27057967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	411	524	0	ENST00000324856.7:c.1675C>T	p.Pro559Ser	p.P559S	ENST00000324856	NM_006015.4	559	Cct/Tct																																																																														
CBL	0	MSKCC	GRCh37	11	119144627	119144627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	148	391	1	ENST00000264033.4:c.640C>T	p.Pro214Ser	p.P214S	ENST00000264033	NM_005188.3	214	Ccc/Tcc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445469	49445469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	372	993	1	ENST00000301067.7:c.1997C>T	p.Pro666Leu	p.P666L	ENST00000301067	NM_003482.3	666	cCt/cTt																																																																														
GLI1	0	MSKCC	GRCh37	12	57863226	57863226	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	136	428	0	ENST00000228682.2:c.1321A>G	p.Ser441Gly	p.S441G	ENST00000228682	NM_005269.2	441	Agc/Ggc																																																																														
DICER1	0	MSKCC	GRCh37	14	95557653	95557653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	233	564	0	ENST00000343455.3:c.5414C>T	p.Pro1805Leu	p.P1805L	ENST00000343455	NM_177438.2	1805	cCa/cTa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678602	88678602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	69	271	0	ENST00000360948.2:c.934G>A	p.Glu312Lys	p.E312K	ENST00000360948	NM_001012338.2	312	Gag/Aag																																																																														
BLM	0	MSKCC	GRCh37	15	91303994	91303994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	264	613	1	ENST00000355112.3:c.1391C>T	p.Ser464Phe	p.S464F	ENST00000355112	NM_000057.2	464	tCt/tTt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829866	72829866	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	258	612	0	ENST00000268489.5:c.6715T>A	p.Trp2239Arg	p.W2239R	ENST00000268489	NM_006885.3	2239	Tgg/Agg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59760818	59760818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	224	558	0	ENST00000259008.2:c.3589G>A	p.Gly1197Arg	p.G1197R	ENST00000259008	NM_032043.2	1197	Gga/Aga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575119	48575119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	155	338	1	ENST00000342988.3:c.313C>T	p.His105Tyr	p.H105Y	ENST00000342988	NM_005359.5	105	Cac/Tac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141516	11141516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	242	707	1	ENST00000344626.4:c.3493C>T	p.Leu1165Phe	p.L1165F	ENST00000344626	NM_003072.3	1165	Ctc/Ttc																																																																														
ALK	0	MSKCC	GRCh37	2	29606675	29606675	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	211	575	0	ENST00000389048.3:c.1205T>G	p.Val402Gly	p.V402G	ENST00000389048	NM_004304.4	402	gTg/gGg																																																																														
INHA	0	MSKCC	GRCh37	2	220437162	220437163	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	310	894	1	ENST00000243786.2:c.66_67delinsAA	p.Glu23Lys	p.E23K	ENST00000243786	NM_002191.3	22	ctGGag/ctAAag																																																																														
ROS1	0	MSKCC	GRCh37	6	117631391	117631391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	151	365	1	ENST00000368508.3:c.6287G>A	p.Arg2096Gln	p.R2096Q	ENST00000368508	NM_002944.2	2096	cGg/cAg																																																																														
ERCC5	0	MSKCC	GRCh37	13	103527931	103527931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs4150388		P-0019557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	172	390	0	ENST00000355739.4:c.3239G>A	p.Gly1080Glu	p.G1080E	ENST00000355739	NM_000123.3	1080	gGa/gAa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	62	783	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
DIS3	0	MSKCC	GRCh37	13	73342987	73342987	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	57	603	0	ENST00000377767.4:c.1819A>T	p.Thr607Ser	p.T607S	ENST00000377767	NM_014953.3	607	Acc/Tcc																																																																														
HGF	0	MSKCC	GRCh37	7	81374385	81374385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	72	613	0	ENST00000222390.5:c.677C>A	p.Thr226Lys	p.T226K	ENST00000222390	NM_000601.4	226	aCa/aAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	593	398	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	345	582	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
RAD51	0	MSKCC	GRCh37	15	41011093	41011093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	102	525	0	ENST00000267868.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000267868	NM_002875.4	176	Gag/Aag																																																																														
CSF1R	0	MSKCC	GRCh37	5	149460389	149460389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	92	558	1	ENST00000286301.3:c.248G>A	p.Arg83His	p.R83H	ENST00000286301	NM_005211.3	83	cGc/cAc																																																																														
RARA	0	MSKCC	GRCh37	17	38512309	38512309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	441	977	0	ENST00000254066.5:c.1220C>T	p.Pro407Leu	p.P407L	ENST00000254066	NM_000964.3	407	cCg/cTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89653841	89653850	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAACAATA	AGGAACAATA	-			P-0019561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	187	631	0	ENST00000371953.3:c.139_148del	p.Arg47LeufsTer4	p.R47Lfs*4	ENST00000371953	NM_000314.4	47	AGGAACAATAtt/tt																																																																														
PTEN	0	MSKCC	GRCh37	10	89711953	89711959	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGCAC	GTGGCAC	-			P-0019561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	242	633	0	ENST00000371953.3:c.571_577del	p.Val191CysfsTer6	p.V191Cfs*6	ENST00000371953	NM_000314.4	191	GTGGCACtg/tg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71944143	71944143	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	329	787	0	ENST00000298229.2:c.1976C>G	p.Pro659Arg	p.P659R	ENST00000298229	NM_001567.3	659	cCc/cGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0019562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	199	849	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	0	MSKCC	GRCh37	17	7579591	7579592	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0019562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	618	718	0	ENST00000269305.4:c.97-2_97-1insC		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
HLA-B	0	MSKCC	GRCh37	6	31322931	31322933	+	inframe_deletion	In_Frame_Del	DEL	ACC	ACC	-			P-0019562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1765	381	1044	0	ENST00000412585.2:c.963_965del	p.Val322del	p.V322del	ENST00000412585	NM_005514.6	321	gtGGTc/gtc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70980750	70980750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	280	858	0	ENST00000276594.2:c.718C>G	p.Gln240Glu	p.Q240E	ENST00000276594	NM_024504.3	240	Caa/Gaa																																																																														
NBN	0	MSKCC	GRCh37	8	90965780	90965780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	121	379	0	ENST00000265433.3:c.1537C>G	p.Pro513Ala	p.P513A	ENST00000265433	NM_002485.4	513	Cct/Gct																																																																														
MET	0	MSKCC	GRCh37	7	116422038	116422064	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCAGAATCCAACTGTAAAAGATCTTAT	GCAGAATCCAACTGTAAAAGATCTTAT	AG			P-0019562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	124	423	0	ENST00000397752.3:c.3523-4_3545delinsAG		p.X1175_splice	ENST00000397752	NM_000245.2	1175																																																																															
MET	0	MSKCC	GRCh37	7	116411882	116411938	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAGTTCGCTACGATGCAAGAG	TTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAGTTCGCTACGATGCAAGAG	-			P-0019564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	138	1182	0	ENST00000397752.3:c.2888-20_2924del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
ATM	0	MSKCC	GRCh37	11	108201096	108201096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	93	600	0	ENST00000278616.4:c.7463G>T	p.Cys2488Phe	p.C2488F	ENST00000278616	NM_000051.3	2488	tGt/tTt																																																																														
JAK3	0	MSKCC	GRCh37	19	17941391	17941391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	323	1165	3	ENST00000458235.1:c.3017G>A	p.Arg1006His	p.R1006H	ENST00000458235	NM_000215.3	1006	cGc/cAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115696	8115701	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GTTTAG	GTTTAG	AC			P-0019566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	60	551	0	ENST00000346208.3:c.1048-6_1048-1delinsAC		p.X350_splice	ENST00000346208		350																																																																															
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	96	795	2				ENST00000310581	NM_198253.2																																																																																
ASXL2	0	MSKCC	GRCh37	2	26029126	26029126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	139	567	0	ENST00000435504.4:c.224C>T	p.Pro75Leu	p.P75L	ENST00000435504		75	cCa/cTa																																																																														
FLT4	0	MSKCC	GRCh37	5	180057627	180057627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	127	1037	0	ENST00000261937.6:c.328G>A	p.Val110Ile	p.V110I	ENST00000261937	NM_182925.4	110	Gtc/Atc																																																																														
TP63	0	MSKCC	GRCh37	3	189455576	189455576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	119	745	1	ENST00000264731.3:c.110G>A	p.Arg37Gln	p.R37Q	ENST00000264731	NM_003722.4	37	cGa/cAa																																																																														
BRAF	0	MSKCC	GRCh37	7	140453135	140453136	+	missense_variant	Missense_Mutation	DNP	CA	CA	TT			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	112	642	0	ENST00000288602.6:c.1799_1800delTGinsAA	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTG/gAA																																																																														
STK19	0	MSKCC	GRCh37	6	31948523	31948523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	17	350	1	ENST00000375331.2:c.994C>T	p.Arg332Trp	p.R332W	ENST00000375331	NM_004197.1	332	Cgg/Tgg																																																																														
CYLD	1540	MSKCC	GRCh37	16	50826577	50826577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	97	506	1	ENST00000398568.2:c.2302C>T	p.Pro768Ser	p.P768S	ENST00000398568	NM_001042412.1	768	Cct/Tct																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100298	27100301	+	frameshift_variant	Frame_Shift_Del	DEL	ATTC	ATTC	TTT			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	106	851	1	ENST00000324856.7:c.4010_4013delinsTTT	p.Asp1337ValfsTer144	p.D1337Vfs*144	ENST00000324856	NM_006015.4	1337	gATTCc/gTTTc																																																																														
AKT3	0	MSKCC	GRCh37	1	243777028	243777028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	125	608	1	ENST00000263826.5:c.641C>T	p.Ser214Phe	p.S214F	ENST00000263826	NM_005465.4	214	tCc/tTc																																																																														
FLT3	0	MSKCC	GRCh37	13	28588617	28588617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	126	576	0	ENST00000241453.7:c.2831G>A	p.Gly944Glu	p.G944E	ENST00000241453	NM_004119.2	944	gGa/gAa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16062159	16062159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	171	701	0	ENST00000268712.3:c.647C>T	p.Pro216Leu	p.P216L	ENST00000268712	NM_006311.3	216	cCt/cTt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868605	37868605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	75	643	0	ENST00000269571.5:c.1052G>A	p.Arg351Gln	p.R351Q	ENST00000269571		351	cGa/cAa																																																																														
INSR	0	MSKCC	GRCh37	19	7132319	7132319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	111	446	0	ENST00000302850.5:c.2692C>T	p.Leu898Phe	p.L898F	ENST00000302850	NM_000208.2	898	Ctc/Ttc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272073	15272074	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	207	908	1	ENST00000263388.2:c.6365_6366delinsTT	p.Pro2122Leu	p.P2122L	ENST00000263388	NM_000435.2	2122	cCC/cTT																																																																														
APC	0	MSKCC	GRCh37	5	112179462	112179462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	119	549	0	ENST00000257430.4:c.8171C>T	p.Ser2724Phe	p.S2724F	ENST00000257430	NM_000038.5	2724	tCc/tTc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149509409	149509409	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	68	795	0	ENST00000261799.4:c.1490T>G	p.Leu497Arg	p.L497R	ENST00000261799	NM_002609.3	497	cTg/cGg																																																																														
MDC1	0	MSKCC	GRCh37	6	30679654	30679654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	113	747	0	ENST00000376406.3:c.2065G>T	p.Gly689Cys	p.G689C	ENST00000376406	NM_014641.2	689	Ggt/Tgt																																																																														
ROS1	0	MSKCC	GRCh37	6	117658482	117658482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	67	698	0	ENST00000368508.3:c.5101C>T	p.His1701Tyr	p.H1701Y	ENST00000368508	NM_002944.2	1701	Cat/Tat																																																																														
MET	0	MSKCC	GRCh37	7	116340297	116340297	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	93	477	0	ENST00000397752.3:c.1159C>T	p.Gln387Ter	p.Q387*	ENST00000397752	NM_000245.2	387	Cag/Tag																																																																														
FGFR1	0	MSKCC	GRCh37	8	38275778	38275779	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	139	753	3	ENST00000425967.3:c.1490_1491delinsTT	p.Pro497Leu	p.P497L	ENST00000425967	NM_001174067.1	497	cCC/cTT																																																																														
AGO2	0	MSKCC	GRCh37	8	141561434	141561435	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	61	524	2	ENST00000220592.5:c.1370_1371delinsTT	p.Ala457Val	p.A457V	ENST00000220592	NM_012154.3	457	gCC/gTT																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391529	139391529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	357	1190	0	ENST00000277541.6:c.6662C>T	p.Ser2221Phe	p.S2221F	ENST00000277541	NM_017617.3	2221	tCc/tTc																																																																														
BCOR	0	MSKCC	GRCh37	X	39932584	39932584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	113	600	0	ENST00000378444.4:c.2015C>A	p.Ser672Tyr	p.S672Y	ENST00000378444	NM_001123385.1	672	tCc/tAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	264	854	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778764	3778764	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	28	981	0	ENST00000262367.5:c.6284A>C	p.Gln2095Pro	p.Q2095P	ENST00000262367	NM_004380.2	2095	cAg/cCg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56490331	56490332	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0019581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	89	505	0	ENST00000267101.3:c.2100_2101del	p.Leu700PhefsTer13	p.L700Ffs*13	ENST00000267101	NM_001982.3	700	ttGGcc/ttcc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426491	49426506	+	protein_altering_variant	In_Frame_Del	DEL	AGGGCCAAGTGCCACT	AGGGCCAAGTGCCACT	G			P-0019581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	52	1030	0	ENST00000301067.7:c.11982_11997delinsC	p.Gln3994_Pro3999delinsHis	p.Q3994_P3999delinsH	ENST00000301067	NM_003482.3	3994	caAGTGGCACTTGGCCCT/caC																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	394	738	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274195	10274195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	130	480	1	ENST00000330684.3:c.74C>T	p.Ala25Val	p.A25V	ENST00000330684	NM_001134407.1	25	gCg/gTg																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871199	12871199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	212	319	1	ENST00000228872.4:c.429del	p.Leu144Ter	p.L144*	ENST00000228872	NM_004064.3	142	acG/ac																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431298	49431298	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	116	437	0	ENST00000301067.7:c.9841C>T	p.Gln3281Ter	p.Q3281*	ENST00000301067	NM_003482.3	3281	Cag/Tag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060551	38060571	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	AACCCCCCAGTCCCGGGAGCT	AACCCCCCAGTCCCGGGAGCT	-			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	513	841	0	ENST00000250448.2:c.1418_*19delAGCTCCCGGGACTGGGGGGTT		p.*473*	ENST00000250448	NM_004496.3	473																																																																															
PLCG2	0	MSKCC	GRCh37	16	81944238	81944238	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	487	791	0	ENST00000359376.3:c.1847A>C	p.His616Pro	p.H616P	ENST00000359376	NM_002661.3	616	cAc/cCc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224535	36224535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	320	1252	2	ENST00000222270.7:c.6997G>A	p.Gly2333Arg	p.G2333R	ENST00000222270	NM_014727.1	2333	Ggg/Agg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45873458	45873458	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	379	784	0	ENST00000391945.4:c.38del	p.Pro13ArgfsTer43	p.P13Rfs*43	ENST00000391945	NM_000400.3	13	cCg/cg																																																																														
U2AF1	0	MSKCC	GRCh37	21	44527574	44527574	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	169	710	1	ENST00000291552.4:c.31A>T	p.Thr11Ser	p.T11S	ENST00000291552	NM_006758.2	11	Acc/Tcc																																																																														
EP300	0	MSKCC	GRCh37	22	41553353	41553353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	57	801	0	ENST00000263253.7:c.3442G>A	p.Val1148Ile	p.V1148I	ENST00000263253	NM_001429.3	1148	Gtc/Atc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138474649	138474649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	187	795	1	ENST00000289153.2:c.344G>A	p.Ser115Asn	p.S115N	ENST00000289153	NM_006219.2	115	aGt/aAt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67576482	67576482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	233	601	0	ENST00000274335.5:c.761C>A	p.Ser254Tyr	p.S254Y	ENST00000274335		254	tCc/tAc																																																																														
ABL1	0	MSKCC	GRCh37	9	133759951	133759968	+	inframe_deletion	In_Frame_Del	DEL	GAAGCCGGCTCTGCCTCG	GAAGCCGGCTCTGCCTCG	-			P-0019582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	502	1067	0	ENST00000318560.5:c.2278_2295del	p.Pro760_Lys765del	p.P760_K765del	ENST00000318560	NM_005157.4	758	gaGAAGCCGGCTCTGCCTCGg/gag																																																																														
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	437	941	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	150	507	0	ENST00000435504.4:c.2333dupC	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061247	38061247	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	714	860	0	ENST00000250448.2:c.742C>G	p.Pro248Ala	p.P248A	ENST00000250448	NM_004496.3	248	Ccg/Gcg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879622	151879622	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	35	345	0	ENST00000262189.6:c.5323C>T	p.Gln1775Ter	p.Q1775*	ENST00000262189	NM_170606.2	1775	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	250	695	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	107	669	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	43	472	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	40	492	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	92	384	0	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																														
MGA	0	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	145	631	0	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578429	7578429	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	135	790	0	ENST00000269305.4:c.501delG	p.Gln167HisfsTer3	p.Q167Hfs*3	ENST00000269305	NM_001126112.2	167	caG/ca																																																																														
SESN2	0	MSKCC	GRCh37	1	28598336	28598336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	138	829	0	ENST00000253063.3:c.308C>T	p.Thr103Met	p.T103M	ENST00000253063	NM_031459.4	103	aCg/aTg																																																																														
DDR2	0	MSKCC	GRCh37	1	162725042	162725042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	94	432	0	ENST00000367921.3:c.514C>T	p.His172Tyr	p.H172Y	ENST00000367921	NM_006182.2	172	Cac/Tac																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741681	17741681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	59	579	0	ENST00000250003.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000250003	NM_002478.4	118	Gag/Aag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32905065	32905065	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	67	361	0	ENST00000380152.3:c.691A>C	p.Ser231Arg	p.S231R	ENST00000380152		231	Agc/Cgc																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45655248	45655248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	107	707	1	ENST00000407780.3:c.604G>A	p.Val202Met	p.V202M	ENST00000407780	NM_001283052.1	202	Gtg/Atg																																																																														
FAT1	0	MSKCC	GRCh37	4	187540252	187540252	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	22	537	1	ENST00000441802.2:c.7488A>T	p.Glu2496Asp	p.E2496D	ENST00000441802	NM_005245.3	2496	gaA/gaT																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111558	56111559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGG			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	10	84	0	ENST00000399503.3:c.163_166dup	p.Asp56GlyfsTer21	p.D56Gfs*21	ENST00000399503	NM_005921.1	53	gag/gaGCGGg																																																																														
APC	0	MSKCC	GRCh37	5	112164574	112164574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	50	377	0	ENST00000257430.4:c.1648A>G	p.Asn550Asp	p.N550D	ENST00000257430	NM_000038.5	550	Aat/Gat																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874641	151874649	+	inframe_deletion	In_Frame_Del	DEL	GTTGAGATG	GTTGAGATG	-			P-0019585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	36	463	0	ENST00000262189.6:c.7889_7897del	p.Pro2630_Gln2632del	p.P2630_Q2632del	ENST00000262189	NM_170606.2	2630	cCATCTCAACaa/caa																																																																														
MET	0	MSKCC	GRCh37	7	116411868	116411883	+	intron_variant	Intron	DEL	TCTTTAACAAGCTCTT	TCTTTAACAAGCTCTT	-			P-0019588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	241	1058	0	ENST00000397752.3:c.2888-30_2888-15del		p.*963*	ENST00000397752	NM_000245.2																																																																																
PBRM1	0	MSKCC	GRCh37	3	52610715	52610715	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0019592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	39	321	0	ENST00000394830.3:c.3459-1G>T		p.X1153_splice	ENST00000394830	NM_018313.4	1153																																																																															
ARID1A	0	MSKCC	GRCh37	1	27093058	27093058	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	28	384	0	ENST00000324856.7:c.2988+1G>A		p.X996_splice	ENST00000324856	NM_006015.4	996																																																																															
PTEN	0	MSKCC	GRCh37	10	89692917	89692917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	29	657	0	ENST00000371953.3:c.401T>C	p.Met134Thr	p.M134T	ENST00000371953	NM_000314.4	134	aTg/aCg																																																																														
MYCN	0	MSKCC	GRCh37	2	16086009	16086009	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	69	674	0	ENST00000281043.3:c.1185C>G	p.Asn395Lys	p.N395K	ENST00000281043	NM_005378.4	395	aaC/aaG																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965485	25965485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	86	724	0	ENST00000435504.4:c.3721A>G	p.Thr1241Ala	p.T1241A	ENST00000435504		1241	Acc/Gcc																																																																														
VHL	0	MSKCC	GRCh37	3	10183757	10183757	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	84	798	1	ENST00000256474.2:c.227del	p.Phe76SerfsTer83	p.F76Sfs*83	ENST00000256474	NM_000551.3	76	Ttc/tc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	43	566	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	65	608	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	108	590	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	288	642	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	62	362	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																																																														
TERT	0	MSKCC	GRCh37	5	1295226	1295226	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	93	438	0				ENST00000310581	NM_198253.2																																																																																
TBX3	0	MSKCC	GRCh37	12	115114193	115114193	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	209	738	0	ENST00000257566.3:c.1024G>T	p.Glu342Ter	p.E342*	ENST00000257566	NM_016569.3	342	Gaa/Taa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213503	36213503	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	217	1144	0	ENST00000222270.7:c.2605A>C	p.Lys869Gln	p.K869Q	ENST00000222270	NM_014727.1	869	Aaa/Caa																																																																														
PMS1	0	MSKCC	GRCh37	2	190656573	190656573	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	38	254	0	ENST00000441310.2:c.38C>G	p.Ser13Ter	p.S13*	ENST00000441310	NM_000534.4	13	tCa/tGa																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665248	138665248	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019593-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	220	1065	0	ENST00000330315.3:c.317T>A	p.Leu106His	p.L106H	ENST00000330315	NM_023067.3	106	cTc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0019597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	77	689	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
MTOR	0	MSKCC	GRCh37	1	11186841	11186841	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	103	451	0	ENST00000361445.4:c.6364G>T	p.Glu2122Ter	p.E2122*	ENST00000361445	NM_004958.3	2122	Gag/Tag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	183	684	1	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	182	801	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
RRAGC	0	MSKCC	GRCh37	1	39305242	39305242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	154	632	0	ENST00000373001.3:c.1183C>T	p.Pro395Ser	p.P395S	ENST00000373001	NM_022157.3	395	Cca/Tca																																																																														
SMYD3	0	MSKCC	GRCh37	1	245927443	245927443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1171	183	717	2	ENST00000388985.4:c.1085delT	p.Phe362SerfsTer12	p.F362Sfs*12	ENST00000388985		362	tTc/tc																																																																														
PTEN	0	MSKCC	GRCh37	10	89653830	89653836	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGCGT	AAGGCGT	-			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	89	648	0	ENST00000371953.3:c.129_135del	p.Glu43AspfsTer9	p.E43Dfs*9	ENST00000371953	NM_000314.4	43	gAAGGCGTa/ga																																																																														
PTEN	0	MSKCC	GRCh37	10	89720733	89720734	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	14	212	0	ENST00000371953.3:c.885_886del	p.Cys296Ter	p.C296*	ENST00000371953	NM_000314.4	295	cTA/c																																																																														
INPPL1	0	MSKCC	GRCh37	11	71941052	71941052	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	211	1071	0	ENST00000298229.2:c.928C>T	p.Gln310Ter	p.Q310*	ENST00000298229	NM_001567.3	310	Cag/Tag																																																																														
INPPL1	0	MSKCC	GRCh37	11	71943379	71943379	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	165	651	0	ENST00000298229.2:c.1711C>T	p.Arg571Trp	p.R571W	ENST00000298229	NM_001567.3	571	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	148	759	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
IRS2	0	MSKCC	GRCh37	13	110435262	110435263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	32	437	0	ENST00000375856.3:c.3138dup	p.Ala1047ArgfsTer25	p.A1047Rfs*25	ENST00000375856	NM_003749.2	1046	-/C																																																																														
DICER1	0	MSKCC	GRCh37	14	95569756	95569756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	73	359	0	ENST00000343455.3:c.3977C>A	p.Ala1326Asp	p.A1326D	ENST00000343455	NM_177438.2	1326	gCc/gAc																																																																														
CTCF	0	MSKCC	GRCh37	16	67645012	67645012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	161	868	0	ENST00000264010.4:c.277A>G	p.Thr93Ala	p.T93A	ENST00000264010	NM_006565.3	93	Acc/Gcc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831201	72831201	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	143	634	0	ENST00000268489.5:c.5380C>T	p.Gln1794Ter	p.Q1794*	ENST00000268489	NM_006885.3	1794	Cag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	82	440	3	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
RARA	0	MSKCC	GRCh37	17	38504656	38504659	+	frameshift_variant	Frame_Shift_Del	DEL	TGTC	TGTC	-			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	192	911	1	ENST00000254066.5:c.271_274del	p.Cys91ArgfsTer44	p.C91Rfs*44	ENST00000254066	NM_000964.3	89	ttTGTC/tt																																																																														
RARA	0	MSKCC	GRCh37	17	38510573	38510573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	152	713	0	ENST00000254066.5:c.827G>A	p.Arg276Gln	p.R276Q	ENST00000254066	NM_000964.3	276	cGg/cAg																																																																														
CARM1	0	MSKCC	GRCh37	19	11019824	11019824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	204	894	0	ENST00000327064.4:c.499G>A	p.Val167Met	p.V167M	ENST00000327064	NM_199141.1	167	Gtg/Atg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273797	18273797	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	199	947	0	ENST00000222254.8:c.1130T>G	p.Leu377Arg	p.L377R	ENST00000222254	NM_005027.3	377	cTg/cGg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	135	646	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	134	579	2	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
BCL6	0	MSKCC	GRCh37	3	187451444	187451444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	93	621	0	ENST00000232014.4:c.38G>A	p.Arg13His	p.R13H	ENST00000232014	NM_001130845.1	13	cGc/cAc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	189	971	7	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467646	66467646	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	128	436	0	ENST00000273854.3:c.623del	p.Lys208ArgfsTer60	p.K208Rfs*60	ENST00000273854	NM_004439.5	208	aAg/ag																																																																														
FAT1	0	MSKCC	GRCh37	4	187629765	187629765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	54	801	0	ENST00000441802.2:c.1217C>A	p.Pro406His	p.P406H	ENST00000441802	NM_005245.3	406	cCt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112176921	112176921	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	33	602	0	ENST00000257430.4:c.5633del	p.Lys1878ArgfsTer4	p.K1878Rfs*4	ENST00000257430	NM_000038.5	1877	gAa/ga																																																																														
DAXX	0	MSKCC	GRCh37	6	33287927	33287929	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	121	613	0	ENST00000374542.5:c.1324_1326del	p.Glu442del	p.E442del	ENST00000374542	NM_001141970.1	442	GAG/-																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467916	50467916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	117	558	1	ENST00000331340.3:c.1151C>T	p.Ser384Leu	p.S384L	ENST00000331340	NM_006060.4	384	tCg/tTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55240798	55240798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	228	1077	2	ENST00000275493.2:c.2042G>T	p.Arg681Met	p.R681M	ENST00000275493	NM_005228.3	681	aGg/aTg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	165	831	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38139044	38139044	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	127	858	1	ENST00000317025.8:c.3559C>T	p.Arg1187Ter	p.R1187*	ENST00000317025	NM_023034.1	1187	Cga/Tga																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	153	692	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
XIAP	0	MSKCC	GRCh37	X	123020120	123020122	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	178	1153	0	ENST00000355640.3:c.612_614del	p.Gly205del	p.G205del	ENST00000355640		203	tGTGgt/tgt																																																																														
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0019598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	46	420	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	241	832	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	218	648	0				ENST00000310581	NM_198253.2																																																																																
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	537	866	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	286	891	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																														
MCL1	0	MSKCC	GRCh37	1	150551682	150551682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	175	478	0	ENST00000369026.2:c.325G>A	p.Glu109Lys	p.E109K	ENST00000369026	NM_021960.4	109	Gag/Aag																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	154	538	5	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
MAPK1	0	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	183	556	2	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879604	37879604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	569	1056	2	ENST00000269571.5:c.1979G>A	p.Gly660Asp	p.G660D	ENST00000269571		660	gGc/gAc																																																																														
RASA1	0	MSKCC	GRCh37	5	86685313	86685313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	74	250	0	ENST00000274376.6:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000274376	NM_002890.2	1010	cGa/cAa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021182	31021182	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201899433		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	292	831	1	ENST00000375687.4:c.1181G>A	p.Arg394His	p.R394H	ENST00000375687	NM_015338.5	394	cGt/cAt																																																																														
RBM10	0	MSKCC	GRCh37	X	47041373	47041373	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	315	560	1	ENST00000329236.7:c.1483C>T	p.Gln495Ter	p.Q495*	ENST00000329236	NM_001204466.1	495	Cag/Tag																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52724361	52724361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	199	593	2	ENST00000322088.6:c.1493G>A	p.Arg498His	p.R498H	ENST00000322088	NM_014225.5	498	cGc/cAc																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134160	41134160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	19	457	0	ENST00000379561.5:c.1468C>T	p.Arg490Trp	p.R490W	ENST00000379561	NM_002015.3	490	Cgg/Tgg																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	221	785	1	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	299	949	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1586	373	1422	3	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																														
TERT	0	MSKCC	GRCh37	5	1294124	1294124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2155	353	1312	4	ENST00000310581.5:c.877C>T	p.Arg293Cys	p.R293C	ENST00000310581	NM_198253.2	293	Cgc/Tgc																																																																														
JUN	0	MSKCC	GRCh37	1	59248106	59248106	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	63	233	0	ENST00000371222.2:c.637del	p.Gln213SerfsTer13	p.Q213Sfs*13	ENST00000371222	NM_002228.3	213	Cag/ag																																																																														
NEGR1	0	MSKCC	GRCh37	1	72241963	72241963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	99	399	0	ENST00000357731.5:c.427G>A	p.Asp143Asn	p.D143N	ENST00000357731	NM_173808.2	143	Gac/Aac																																																																														
TET1	0	MSKCC	GRCh37	10	70333971	70333971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	385	625	0	ENST00000373644.4:c.1876G>A	p.Glu626Lys	p.E626K	ENST00000373644	NM_030625.2	626	Gag/Aag																																																																														
TET1	0	MSKCC	GRCh37	10	70406108	70406108	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	243	777	0	ENST00000373644.4:c.3622A>G	p.Thr1208Ala	p.T1208A	ENST00000373644	NM_030625.2	1208	Act/Gct																																																																														
BIRC3	0	MSKCC	GRCh37	11	102201939	102201942	+	frameshift_variant	Frame_Shift_Del	DEL	GAGA	GAGA	-			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	122	404	0	ENST00000263464.3:c.1295_1298del	p.Arg432LysfsTer14	p.R432Kfs*14	ENST00000263464	NM_001165.4	431	GAGAga/ga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416112	49416112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	197	597	0	ENST00000301067.7:c.16363A>C	p.Ile5455Leu	p.I5455L	ENST00000301067	NM_003482.3	5455	Ata/Cta																																																																														
FLT3	0	MSKCC	GRCh37	13	28599069	28599069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	182	651	2	ENST00000241453.7:c.2219C>T	p.Ser740Leu	p.S740L	ENST00000241453	NM_004119.2	740	tCa/tTa																																																																														
RB1	0	MSKCC	GRCh37	13	48947622	48947622	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	125	470	0	ENST00000267163.4:c.1209T>G	p.Tyr403Ter	p.Y403*	ENST00000267163	NM_000321.2	403	taT/taG																																																																														
ERCC5	0	MSKCC	GRCh37	13	103519037	103519037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	223	554	0	ENST00000355739.4:c.2375C>T	p.Ala792Val	p.A792V	ENST00000355739	NM_000123.3	792	gCg/gTg																																																																														
CYLD	0	MSKCC	GRCh37	16	50826565	50826565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	153	512	0	ENST00000398568.2:c.2296del	p.Ile766PhefsTer7	p.I766Ffs*7	ENST00000398568	NM_001042412.1	764	Aaa/aa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830616	72830616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149779567		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	238	885	0	ENST00000268489.5:c.5965G>A	p.Gly1989Ser	p.G1989S	ENST00000268489	NM_006885.3	1989	Ggc/Agc																																																																														
CDK12	0	MSKCC	GRCh37	17	37657587	37657587	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	257	810	1	ENST00000447079.4:c.2504A>G	p.His835Arg	p.H835R	ENST00000447079	NM_015083.1	835	cAt/cGt																																																																														
STAT5A	0	MSKCC	GRCh37	17	40444050	40444050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	230	798	0	ENST00000345506.4:c.346G>C	p.Glu116Gln	p.E116Q	ENST00000345506	NM_003152.3	116	Gaa/Caa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41197783	41197783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	290	904	1	ENST00000357654.3:c.5504G>A	p.Arg1835Gln	p.R1835Q	ENST00000357654	NM_007294.3	1835	cGa/cAa																																																																														
INSR	0	MSKCC	GRCh37	19	7132295	7132295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	199	705	0	ENST00000302850.5:c.2716G>A	p.Ala906Thr	p.A906T	ENST00000302850	NM_000208.2	906	Gct/Act																																																																														
BRD4	0	MSKCC	GRCh37	19	15350204	15350204	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	311	967	4	ENST00000263377.2:c.3575del	p.Lys1192ArgfsTer3	p.K1192Rfs*3	ENST00000263377	NM_058243.2	1192	aAg/ag																																																																														
AXL	0	MSKCC	GRCh37	19	41749571	41749571	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200850031		P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	304	1075	2	ENST00000301178.4:c.1496G>A	p.Arg499His	p.R499H	ENST00000301178	NM_021913.4	499	cGc/cAc																																																																														
SOS1	0	MSKCC	GRCh37	2	39216450	39216450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	172	747	0	ENST00000402219.2:c.3352G>C	p.Asp1118His	p.D1118H	ENST00000402219	NM_005633.3	1118	Gat/Cat																																																																														
MSH6	0	MSKCC	GRCh37	2	48027883	48027883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	150	449	0	ENST00000234420.5:c.2761G>A	p.Ala921Thr	p.A921T	ENST00000234420	NM_000179.2	921	Gct/Act																																																																														
ERBB4	0	MSKCC	GRCh37	2	212288901	212288901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	85	330	0	ENST00000342788.4:c.2845G>A	p.Val949Ile	p.V949I	ENST00000342788	NM_005235.2	949	Gtt/Att																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793363	242793363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	336	1211	0	ENST00000334409.5:c.714del	p.Val239CysfsTer39	p.V239Cfs*39	ENST00000334409	NM_005018.2	238	ccC/cc																																																																														
EP300	0	MSKCC	GRCh37	22	41553359	41553359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	221	784	0	ENST00000263253.7:c.3448G>C	p.Glu1150Gln	p.E1150Q	ENST00000263253	NM_001429.3	1150	Gaa/Caa																																																																														
MLH1	0	MSKCC	GRCh37	3	37070411	37070412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGG			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	191	372	0	ENST00000231790.2:c.1546_1547insCGGG	p.Gln516ProfsTer5	p.Q516Pfs*5	ENST00000231790	NM_000249.3	516	cag/cCGGGag																																																																														
SDHA	0	MSKCC	GRCh37	5	233748	233748	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	1053	879	0	ENST00000264932.6:c.1052T>A	p.Ile351Asn	p.I351N	ENST00000264932	NM_004168.2	351	aTc/aAc																																																																														
PARK2	0	MSKCC	GRCh37	6	162864422	162864422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	218	799	0	ENST00000366898.1:c.91G>A	p.Ala31Thr	p.A31T	ENST00000366898	NM_004562.2	31	Gct/Act																																																																														
PMS2	0	MSKCC	GRCh37	7	6026972	6026972	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	109	421	0	ENST00000265849.7:c.1424T>C	p.Val475Ala	p.V475A	ENST00000265849	NM_000535.5	475	gTg/gCg																																																																														
INHBA	0	MSKCC	GRCh37	7	41729610	41729610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	183	652	1	ENST00000242208.4:c.919C>T	p.Arg307Trp	p.R307W	ENST00000242208	NM_002192.2	307	Cgg/Tgg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738644	145738644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	271	819	1	ENST00000428558.2:c.2420G>A	p.Arg807His	p.R807H	ENST00000428558	NM_004260.3	807	cGt/cAt																																																																														
AMER1	0	MSKCC	GRCh37	X	63413109	63413109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	231	504	0	ENST00000330258.3:c.58A>G	p.Thr20Ala	p.T20A	ENST00000330258	NM_152424.3	20	Acc/Gcc																																																																														
MLH1	0	MSKCC	GRCh37	3	37070413	37070413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	195	367	0	ENST00000231790.2:c.1548G>C	p.Gln516His	p.Q516H	ENST00000231790	NM_000249.3	516	caG/caC																																																																														
MLH1	0	MSKCC	GRCh37	3	37070412	37070412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	25	372	0	ENST00000231790.2:c.1547A>C	p.Gln516Pro	p.Q516P	ENST00000231790	NM_000249.3	516	cAg/cCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	36	630	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	632	642	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	107	779	1	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
YES1	0	MSKCC	GRCh37	18	756577	756577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	65	580	0	ENST00000314574.4:c.251C>T	p.Ser84Leu	p.S84L	ENST00000314574	NM_005433.3	84	tCa/tTa																																																																														
CCND2	0	MSKCC	GRCh37	12	4409104	4409104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	46	539	0	ENST00000261254.3:c.799G>A	p.Asp267Asn	p.D267N	ENST00000261254	NM_001759.3	267	Gac/Aac																																																																														
ARID2	0	MSKCC	GRCh37	12	46246324	46246324	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	49	435	0	ENST00000334344.6:c.4418C>G	p.Ser1473Cys	p.S1473C	ENST00000334344	NM_152641.2	1473	tCt/tGt																																																																														
EPAS1	0	MSKCC	GRCh37	2	46603687	46603687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	67	593	0	ENST00000263734.3:c.1044G>C	p.Glu348Asp	p.E348D	ENST00000263734	NM_001430.4	348	gaG/gaC																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252892	36252893	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	135	438	0	ENST00000300305.3:c.469dup	p.Arg157LysfsTer3	p.R157Kfs*3	ENST00000300305		157	aga/aAga																																																																														
NF2	0	MSKCC	GRCh37	22	30069309	30069309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	58	777	2	ENST00000338641.4:c.1174G>A	p.Glu392Lys	p.E392K	ENST00000338641	NM_000268.3	392	Gag/Aag																																																																														
MLH1	0	MSKCC	GRCh37	3	37061805	37061805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	42	600	0	ENST00000231790.2:c.889G>C	p.Glu297Gln	p.E297Q	ENST00000231790	NM_000249.3	297	Gaa/Caa																																																																														
RHOA	0	MSKCC	GRCh37	3	49399938	49399938	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	64	602	0	ENST00000418115.1:c.399G>C	p.Lys133Asn	p.K133N	ENST00000418115	NM_001664.2	133	aaG/aaC																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324609	31324609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	31	385	0	ENST00000412585.2:c.199C>T	p.Pro67Ser	p.P67S	ENST00000412585	NM_005514.6	67	Ccg/Tcg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98242349	98242349	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	47	576	0	ENST00000331920.6:c.969G>C	p.Leu323Phe	p.L323F	ENST00000331920	NM_000264.3	323	ttG/ttC																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101907155	101907155	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	43	506	0	ENST00000374994.4:c.1115G>C	p.Arg372Thr	p.R372T	ENST00000374994	NM_004612.2	372	aGa/aCa																																																																														
RBM10	0	MSKCC	GRCh37	X	47041164	47041164	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	89	851	0	ENST00000329236.7:c.1358C>G	p.Ser453Ter	p.S453*	ENST00000329236	NM_001204466.1	453	tCa/tGa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	88	445	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463248	25463248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			456	121	845	4	ENST00000264709.3:c.2245C>T	p.Arg749Cys	p.R749C	ENST00000264709	NM_175629.2	749	Cgc/Tgc																																																																														
AXIN1	0	MSKCC	GRCh37	16	396315	396315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	169	1139	3	ENST00000262320.3:c.711C>A	p.Tyr237Ter	p.Y237*	ENST00000262320	NM_003502.3	237	taC/taA																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25468888	25468888	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0019612-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			521	202	1086	0	ENST00000264709.3:c.1474+1G>A		p.X492_splice	ENST00000264709	NM_175629.2	492																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	128	436	0				ENST00000310581	NM_198253.2																																																																																
NF1	0	MSKCC	GRCh37	17	29652927	29652927	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	20	538	0	ENST00000358273.4:c.4925T>C	p.Val1642Ala	p.V1642A	ENST00000358273	NM_001042492.2	1642	gTa/gCa																																																																														
LATS1	0	MSKCC	GRCh37	6	150004361	150004362	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0019613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	15	656	0	ENST00000253339.5:c.1863_1864del	p.Lys622ArgfsTer2	p.K622Rfs*2	ENST00000253339		621	aaGAaa/aaaa																																																																														
AGO2	0	MSKCC	GRCh37	8	141561516	141561516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	76	575	1	ENST00000220592.5:c.1289C>T	p.Pro430Leu	p.P430L	ENST00000220592	NM_012154.3	430	cCt/cTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	55	502	0				ENST00000310581	NM_198253.2																																																																																
IGF1R	0	MSKCC	GRCh37	15	99250820	99250820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	64	550	0	ENST00000268035.6:c.124G>A	p.Asp42Asn	p.D42N	ENST00000268035	NM_000875.3	42	Gac/Aac																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604683	48604683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	149	641	0	ENST00000342988.3:c.1505G>C	p.Arg502Thr	p.R502T	ENST00000342988	NM_005359.5	502	aGg/aCg																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14629121	14629121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	103	538	0	ENST00000254322.2:c.41G>T	p.Gly14Val	p.G14V	ENST00000254322	NM_006145.1	14	gGc/gTc																																																																														
MSH6	0	MSKCC	GRCh37	2	48033712	48033712	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	150	648	0	ENST00000234420.5:c.3923T>G	p.Leu1308Arg	p.L1308R	ENST00000234420	NM_000179.2	1308	cTc/cGc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266605	198266605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	116	555	1	ENST00000335508.6:c.2231C>A	p.Ala744Asp	p.A744D	ENST00000335508	NM_012433.2	744	gCt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	155	568	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	162	460	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425277	49425277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	315	984	0	ENST00000301067.7:c.13211G>A	p.Gly4404Glu	p.G4404E	ENST00000301067	NM_003482.3	4404	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	75	615	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	153	831	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18552630	18552630	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200787716		P-0019617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	25	602	3	ENST00000266497.5:c.2041C>T	p.Arg681Cys	p.R681C	ENST00000266497		681	Cgc/Tgc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891287	101891287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	61	683	0	ENST00000374994.4:c.248C>T	p.Pro83Leu	p.P83L	ENST00000374994	NM_004612.2	83	cCg/cTg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99456332	99456332	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	33	492	0	ENST00000268035.6:c.1649A>G	p.Asn550Ser	p.N550S	ENST00000268035	NM_000875.3	550	aAc/aGc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18277082	18277082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	90	658	1	ENST00000222254.8:c.1529G>A	p.Arg510Gln	p.R510Q	ENST00000222254	NM_005027.3	510	cGg/cAg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198285804	198285805	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	48	708	0	ENST00000335508.6:c.248dup	p.Tyr84IlefsTer9	p.Y84Ifs*9	ENST00000335508	NM_012433.2	83	gga/ggGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0019618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	182	796	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
ELF3	0	MSKCC	GRCh37	1	201981505	201981505	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	156	939	0	ENST00000359651.3:c.419T>C	p.Ile140Thr	p.I140T	ENST00000359651		140	aTt/aCt																																																																														
PGR	0	MSKCC	GRCh37	11	100909944	100909944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	176	777	0	ENST00000325455.5:c.2705G>A	p.Ser902Asn	p.S902N	ENST00000325455	NM_001202474.3	902	aGt/aAt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914531	32914562	+	frameshift_variant	Frame_Shift_Del	DEL	AGTATTGTTTAAAAGTAACGAACATTCAGACC	AGTATTGTTTAAAAGTAACGAACATTCAGACC	-			P-0019618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	180	932	0	ENST00000380152.3:c.6041_6072del	p.Val2014AlafsTer24	p.V2014Afs*24	ENST00000380152		2013	aaAGTATTGTTTAAAAGTAACGAACATTCAGACCag/aaag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575206	48575206	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	112	419	0	ENST00000342988.3:c.400G>T	p.Glu134Ter	p.E134*	ENST00000342988	NM_005359.5	134	Gaa/Taa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395024	139395024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	166	633	0	ENST00000277541.6:c.5914G>A	p.Asp1972Asn	p.D1972N	ENST00000277541	NM_017617.3	1972	Gac/Aac																																																																														
EGFR	0	MSKCC	GRCh37	7	55242467	55242484	+	inframe_deletion	In_Frame_Del	DEL	AATTAAGAGAAGCAACAT	AATTAAGAGAAGCAACAT	-			P-0019619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	31	881	0	ENST00000275493.2:c.2237_2254del	p.Glu746_Ser752delinsAla	p.E746_S752delinsA	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATct/gct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	83	705	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0019620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	84	1061	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
TOP1	0	MSKCC	GRCh37	20	39744078	39744078	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	32	556	0	ENST00000361337.2:c.1706A>G	p.Asn569Ser	p.N569S	ENST00000361337	NM_003286.2	569	aAt/aGt																																																																														
SOX17	0	MSKCC	GRCh37	8	55371661	55371662	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0019620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	47	789	0	ENST00000297316.4:c.353_354dup	p.Glu119TrpfsTer28	p.E119Wfs*28	ENST00000297316	NM_022454.3	117	-/GT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	60	739	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FLT4	0	MSKCC	GRCh37	5	180047888	180047888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	27	1048	0	ENST00000261937.6:c.2287G>A	p.Val763Met	p.V763M	ENST00000261937	NM_182925.4	763	Gtg/Atg																																																																														
SOS1	0	MSKCC	GRCh37	2	39213242	39213243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	40	998	3	ENST00000402219.2:c.3724dup	p.Ser1242LysfsTer2	p.S1242Kfs*2	ENST00000402219	NM_005633.3	1242	agt/aAgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577529	7577543	+	inframe_deletion	In_Frame_Del	DEL	ATGGGCCTCCGGTTC	ATGGGCCTCCGGTTC	-			P-0019622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	235	862	0	ENST00000269305.4:c.738_752del	p.Met246_Pro250del	p.M246_P250del	ENST00000269305	NM_001126112.2	246	atGAACCGGAGGCCCATc/atc																																																																														
SETD2	0	MSKCC	GRCh37	3	47162293	47162293	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	104	494	0	ENST00000409792.3:c.3833A>G	p.Tyr1278Cys	p.Y1278C	ENST00000409792	NM_014159.6	1278	tAt/tGt																																																																														
TET2	0	MSKCC	GRCh37	4	106197086	106197086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	75	413	0	ENST00000380013.4:c.5419G>A	p.Asp1807Asn	p.D1807N	ENST00000380013	NM_001127208.2	1807	Gat/Aat																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	165	416	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0019624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	292	705	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																														
NSD1	0	MSKCC	GRCh37	5	176722327	176722328	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAGCAC			P-0019624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	60	550	0	ENST00000439151.2:c.7959_7964dup	p.Ser2654_Thr2655dup	p.S2654_T2655dup	ENST00000439151	NM_022455.4	2654	ggg/ggGAGCACg																																																																														
ROS1	0	MSKCC	GRCh37	6	117658346	117658356	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCTTTCTGG	AAGCTTTCTGG	-			P-0019624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	193	1064	0	ENST00000368508.3:c.5227_5237del	p.Pro1743Ter	p.P1743*	ENST00000368508	NM_002944.2	1743	CCAGAAAGCTTt/t																																																																														
BRCA2	0	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	61	642	2	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7579358	7579359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0019625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	681	848	0	ENST00000269305.4:c.327_328dup	p.Arg110ProfsTer14	p.R110Pfs*14	ENST00000269305	NM_001126112.2	110	cgt/cCCgt																																																																														
STK11	0	MSKCC	GRCh37	19	1220394	1220394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	173	844	1	ENST00000326873.7:c.487G>A	p.Gly163Ser	p.G163S	ENST00000326873	NM_000455.4	163	Ggc/Agc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373486	118373486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	66	444	1	ENST00000534358.1:c.6879G>T	p.Gln2293His	p.Q2293H	ENST00000534358	NM_005933.3	2293	caG/caT																																																																														
ARID2	0	MSKCC	GRCh37	12	46285793	46285793	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0019625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	146	638	0	ENST00000334344.6:c.5062-1G>C		p.X1688_splice	ENST00000334344	NM_152641.2	1688																																																																															
MSH2	0	MSKCC	GRCh37	2	47637254	47637254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	118	611	0	ENST00000233146.2:c.388C>G	p.Gln130Glu	p.Q130E	ENST00000233146	NM_000251.2	130	Cag/Gag																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197129	26197129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	59	488	0	ENST00000356476.2:c.350G>C	p.Arg117Pro	p.R117P	ENST00000356476		117	cGa/cCa																																																																														
PTP4A1	0	MSKCC	GRCh37	6	64288396	64288396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	65	611	0	ENST00000370651.3:c.160G>A	p.Asp54Asn	p.D54N	ENST00000370651	NM_003463.4	54	Gac/Aac																																																																														
GATA1	0	MSKCC	GRCh37	X	48650296	48650296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	83	841	4	ENST00000376670.3:c.266G>T	p.Gly89Val	p.G89V	ENST00000376670	NM_002049.3	89	gGg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	143	916	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	189	903	1	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741886	17741886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	51	184	0	ENST00000250003.3:c.557C>A	p.Pro186Gln	p.P186Q	ENST00000250003	NM_002478.4	186	cCg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	216	546	5	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
AXL	0	MSKCC	GRCh37	19	41765474	41765474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	137	891	0	ENST00000301178.4:c.2350C>T	p.Arg784Trp	p.R784W	ENST00000301178	NM_021913.4	784	Cgg/Tgg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	394	724	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																														
KDM5A	0	MSKCC	GRCh37	12	402217	402217	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	217	1013	1	ENST00000399788.2:c.4574A>C	p.Lys1525Thr	p.K1525T	ENST00000399788	NM_001042603.1	1525	aAg/aCg																																																																														
CD276	0	MSKCC	GRCh37	15	73994910	73994910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	17	150	0	ENST00000318443.5:c.394G>A	p.Ala132Thr	p.A132T	ENST00000318443	NM_001024736.1	132	Gct/Act																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390162	89390162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	131	524	4	ENST00000336596.2:c.911G>T	p.Cys304Phe	p.C304F	ENST00000336596	NM_005233.5	304	tGc/tTc																																																																														
BCOR	0	MSKCC	GRCh37	X	39934364	39934364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	366	745	5	ENST00000378444.4:c.235C>T	p.Arg79Trp	p.R79W	ENST00000378444	NM_001123385.1	79	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	80	670	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	78	442	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573628	48573628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	39	504	1	ENST00000342988.3:c.212G>T	p.Cys71Phe	p.C71F	ENST00000342988	NM_005359.5	71	tGt/tTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971186	21971192	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGCT	GGGCGCT	-			P-0019628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	62	475	0	ENST00000304494.5:c.166_172del	p.Ser56GlufsTer88	p.S56Efs*88	ENST00000304494	NM_000077.4	56	AGCGCCCga/ga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971186	21971192	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGCT	GGGCGCT	-			P-0019628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	62	475	0	ENST00000304494.5:c.166_172del	p.Ser56GlufsTer88	p.S56Efs*88	ENST00000304494	NM_000077.4	56	AGCGCCCga/ga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971186	21971192	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGCT	GGGCGCT	-			P-0019628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	62	475	0	ENST00000304494.5:c.166_172del	p.Ser56GlufsTer88	p.S56Efs*88	ENST00000304494	NM_000077.4	56	AGCGCCCga/ga																																																																														
ATM	0	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	14	676	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	23	587	0				ENST00000310581	NM_198253.2																																																																																
RPS6KB2	0	MSKCC	GRCh37	11	67201506	67201506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	39	1007	1	ENST00000312629.5:c.947C>T	p.Pro316Leu	p.P316L	ENST00000312629	NM_003952.2	316	cCa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578187	7578187	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs878854071		P-0019630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	142	1124	0	ENST00000269305.4:c.662del	p.Glu221GlyfsTer26	p.E221Gfs*26	ENST00000269305	NM_001126112.2	221	gAg/gg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15295181	15295181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	87	1282	1	ENST00000263388.2:c.2491G>T	p.Gly831Trp	p.G831W	ENST00000263388	NM_000435.2	831	Ggg/Tgg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	408	826	0	ENST00000245479.2:c.791G>A	p.Arg264Lys	p.R264K	ENST00000245479	NM_000346.3	264	aGa/aAa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3808901	3808901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	330	743	0	ENST00000262367.5:c.3323C>T	p.Ser1108Leu	p.S1108L	ENST00000262367	NM_004380.2	1108	tCa/tTa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983361	15983361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	222	453	2	ENST00000268712.3:c.3418C>T	p.Gln1140Ter	p.Q1140*	ENST00000268712	NM_006311.3	1140	Caa/Taa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600407	10600407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	113	1073	1	ENST00000171111.5:c.1448G>T	p.Arg483Leu	p.R483L	ENST00000171111	NM_203500.1	483	cGc/cTc																																																																														
MST1R	0	MSKCC	GRCh37	3	49935090	49935090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	104	794	1	ENST00000296474.3:c.1909G>C	p.Glu637Gln	p.E637Q	ENST00000296474	NM_002447.2	637	Gag/Cag																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157100093	157100120	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCGGCGGCGGCAGCAGCAGGAGGCG	GCGGCGGCGGCGGCAGCAGCAGGAGGCG	-			P-0019631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	57	47	0	ENST00000346085.5:c.1044_1071del	p.Ala349MetfsTer11	p.A349Mfs*11	ENST00000346085	NM_020732.3	344	GCGGCGGCGGCGGCAGCAGCAGGAGGCGgc/gc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	33	538	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	41	830	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087395	27087395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	57	816	0	ENST00000324856.7:c.1969C>G	p.Leu657Val	p.L657V	ENST00000324856	NM_006015.4	657	Ctg/Gtg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151856053	151856054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	44	589	0	ENST00000262189.6:c.11564dup	p.Arg3856GlufsTer4	p.R3856Efs*4	ENST00000262189	NM_170606.2	3855	cag/caAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859891	151859891	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	29	425	0	ENST00000262189.6:c.10771C>T	p.Gln3591Ter	p.Q3591*	ENST00000262189	NM_170606.2	3591	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	197	558	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
CDH1	0	MSKCC	GRCh37	16	68835629	68835629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	283	720	1	ENST00000261769.5:c.220C>T	p.Arg74Ter	p.R74*	ENST00000261769	NM_004360.3	74	Cga/Tga																																																																														
MEN1	0	MSKCC	GRCh37	11	64577152	64577152	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	375	965	0	ENST00000337652.1:c.430T>A	p.Phe144Ile	p.F144I	ENST00000337652	NM_130803.2	144	Ttc/Atc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18274100	18274100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	63	790	0	ENST00000222254.8:c.1318G>C	p.Glu440Gln	p.E440Q	ENST00000222254	NM_005027.3	440	Gag/Cag																																																																														
ROS1	0	MSKCC	GRCh37	6	117662564	117662564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	15	426	0	ENST00000368508.3:c.4901A>C	p.Lys1634Thr	p.K1634T	ENST00000368508	NM_002944.2	1634	aAg/aCg																																																																														
ROS1	0	MSKCC	GRCh37	6	117662588	117662588	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	23	508	0	ENST00000368508.3:c.4877C>G	p.Ser1626Cys	p.S1626C	ENST00000368508	NM_002944.2	1626	tCt/tGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877802	151877802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	22	286	0	ENST00000262189.6:c.7143G>C	p.Leu2381Phe	p.L2381F	ENST00000262189	NM_170606.2	2381	ttG/ttC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	218	990	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	387	1109	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	143	382	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	172	519	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427027	49427027	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	205	678	0	ENST00000301067.7:c.11461del	p.Gln3821ArgfsTer9	p.Q3821Rfs*9	ENST00000301067	NM_003482.3	3821	Cag/ag																																																																														
NTRK3	0	MSKCC	GRCh37	15	88727516	88727516	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	232	775	0	ENST00000360948.2:c.263G>A	p.Trp88Ter	p.W88*	ENST00000360948	NM_001012338.2	88	tGg/tAg																																																																														
EPAS1	0	MSKCC	GRCh37	2	46602869	46602869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	348	1055	2	ENST00000263734.3:c.927G>A	p.Met309Ile	p.M309I	ENST00000263734	NM_001430.4	309	atG/atA																																																																														
APC	324	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0019637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	124	611	0	ENST00000257430.4:c.1412del		p.X471_splice	ENST00000257430	NM_000038.5	471																																																																															
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	133	687	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101138	27101138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	75	832	1	ENST00000324856.7:c.4420C>T	p.Gln1474Ter	p.Q1474*	ENST00000324856	NM_006015.4	1474	Caa/Taa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100213	157100253	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCTC	GGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCTC	-			P-0019639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	61	47	0	ENST00000346085.5:c.1160_1200del	p.Ala387GlyfsTer134	p.A387Gfs*134	ENST00000346085	NM_020732.3	384	GGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCTCg/g																																																																														
XPO1	0	MSKCC	GRCh37	2	61760990	61760990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	52	509	0	ENST00000401558.2:c.43C>G	p.Gln15Glu	p.Q15E	ENST00000401558	NM_003400.3	15	Cag/Gag																																																																														
FAT1	0	MSKCC	GRCh37	4	187521129	187521129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	56	549	3	ENST00000441802.2:c.12026G>A	p.Cys4009Tyr	p.C4009Y	ENST00000441802	NM_005245.3	4009	tGc/tAc																																																																														
TAP2	0	MSKCC	GRCh37	6	32797206	32797208	+	inframe_deletion	In_Frame_Del	DEL	TAG	TAG	-			P-0019639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	135	797	0	ENST00000374899.4:c.1901_1903del	p.Thr634del	p.T634del	ENST00000374899	NM_018833.2	634	aCTAgt/agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	62	675	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	80	862	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	406	526	0	ENST00000342988.3:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000342988	NM_005359.5	352	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0019646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	203	507	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
MEN1	0	MSKCC	GRCh37	11	64577296	64577296	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	588	828	0	ENST00000337652.1:c.286del	p.Gln96ArgfsTer23	p.Q96Rfs*23	ENST00000337652	NM_130803.2	96	Cag/ag																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	118	711	1	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																																																														
NF1	0	MSKCC	GRCh37	17	29576091	29576091	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	124	739	0	ENST00000358273.4:c.4064C>G	p.Ser1355Ter	p.S1355*	ENST00000358273	NM_001042492.2	1355	tCa/tGa																																																																														
FLCN	0	MSKCC	GRCh37	17	17125934	17125934	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	51	767	0	ENST00000285071.4:c.660G>C	p.Gln220His	p.Q220H	ENST00000285071	NM_144997.5	220	caG/caC																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32181898	32181898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	126	796	0	ENST00000375023.3:c.2156C>G	p.Thr719Arg	p.T719R	ENST00000375023	NM_004557.3	719	aCa/aGa																																																																														
NBN	0	MSKCC	GRCh37	8	90976716	90976716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	116	589	0	ENST00000265433.3:c.916C>T	p.Pro306Ser	p.P306S	ENST00000265433	NM_002485.4	306	Cct/Tct																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073692	8073692	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	61	475	0	ENST00000377482.5:c.967G>T	p.Glu323Ter	p.E323*	ENST00000377482	NM_018948.3	323	Gaa/Taa																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074357	8074369	+	frameshift_variant	Frame_Shift_Del	DEL	TCACTTGGGGGAA	TCACTTGGGGGAA	-			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	46	445	0	ENST00000377482.5:c.290_302del	p.Ile97LysfsTer20	p.I97Kfs*20	ENST00000377482	NM_018948.3	97	aTTCCCCCAAGTGAa/aa																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9782057	9782057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	50	865	1	ENST00000377346.4:c.2080G>A	p.Ala694Thr	p.A694T	ENST00000377346	NM_005026.3	694	Gcc/Acc																																																																														
SPEN	0	MSKCC	GRCh37	1	16257581	16257581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	53	682	0	ENST00000375759.3:c.4846C>A	p.His1616Asn	p.H1616N	ENST00000375759	NM_015001.2	1616	Cat/Aat																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105786	27105786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	46	553	1	ENST00000324856.7:c.5397G>T	p.Glu1799Asp	p.E1799D	ENST00000324856	NM_006015.4	1799	gaG/gaT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	115	635	1	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																														
MPL	0	MSKCC	GRCh37	1	43804367	43804367	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	53	514	0	ENST00000372470.3:c.367C>T	p.Arg123Ter	p.R123*	ENST00000372470	NM_005373.2	123	Cga/Tga																																																																														
JAK1	0	MSKCC	GRCh37	1	65321211	65321211	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	28	451	0	ENST00000342505.4:c.1629C>A	p.Cys543Ter	p.C543*	ENST00000342505	NM_002227.2	543	tgC/tgA																																																																														
JAK1	0	MSKCC	GRCh37	1	65332884	65332884	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	20	234	0	ENST00000342505.4:c.655C>T	p.Arg219Ter	p.R219*	ENST00000342505	NM_002227.2	219	Cga/Tga																																																																														
FUBP1	0	MSKCC	GRCh37	1	78429360	78429360	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	56	556	0	ENST00000370768.2:c.1082G>T	p.Arg361Ile	p.R361I	ENST00000370768	NM_003902.3	361	aGa/aTa																																																																														
CSDE1	0	MSKCC	GRCh37	1	115263192	115263192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	64	687	0	ENST00000438362.2:c.2158C>T	p.Arg720Cys	p.R720C	ENST00000438362	NM_001242891.1	720	Cgc/Tgc																																																																														
CSDE1	0	MSKCC	GRCh37	1	115273000	115273000	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	78	675	0	ENST00000438362.2:c.1373A>C	p.Lys458Thr	p.K458T	ENST00000438362	NM_001242891.1	458	aAa/aCa																																																																														
CSDE1	0	MSKCC	GRCh37	1	115276614	115276614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	54	622	1	ENST00000438362.2:c.845G>A	p.Arg282Lys	p.R282K	ENST00000438362	NM_001242891.1	282	aGa/aAa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462008	120462008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	40	534	0	ENST00000256646.2:c.5708C>T	p.Ala1903Val	p.A1903V	ENST00000256646	NM_024408.3	1903	gCc/gTc																																																																														
DDR2	0	MSKCC	GRCh37	1	162743290	162743290	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	68	391	0	ENST00000367921.3:c.1760A>C	p.Lys587Thr	p.K587T	ENST00000367921	NM_006182.2	587	aAa/aCa																																																																														
DDR2	0	MSKCC	GRCh37	1	162746018	162746018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	57	464	2	ENST00000367921.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000367921	NM_006182.2	714	cGa/cAa																																																																														
RFWD2	0	MSKCC	GRCh37	1	175956236	175956236	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	52	353	0	ENST00000367669.3:c.1976G>C	p.Ser659Thr	p.S659T	ENST00000367669	NM_022457.5	659	aGt/aCt																																																																														
IKBKE	0	MSKCC	GRCh37	1	206649698	206649698	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	47	572	0	ENST00000367120.3:c.533A>C	p.Glu178Ala	p.E178A	ENST00000367120	NM_014002.3	178	gAg/gCg																																																																														
IL10	0	MSKCC	GRCh37	1	206941988	206941988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	36	321	0	ENST00000423557.1:c.530G>A	p.Arg177Gln	p.R177Q	ENST00000423557	NM_000572.2	177	cGa/cAa																																																																														
FH	0	MSKCC	GRCh37	1	241669344	241669344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	56	684	1	ENST00000366560.3:c.863G>A	p.Gly288Asp	p.G288D	ENST00000366560	NM_000143.3	288	gGc/gAc																																																																														
FH	0	MSKCC	GRCh37	1	241669404	241669404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	50	551	0	ENST00000366560.3:c.803G>T	p.Arg268Ile	p.R268I	ENST00000366560	NM_000143.3	268	aGa/aTa																																																																														
AKT3	0	MSKCC	GRCh37	1	243668588	243668588	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	85	572	0	ENST00000263826.5:c.1403T>C	p.Phe468Ser	p.F468S	ENST00000263826	NM_005465.4	468	tTc/tCc																																																																														
TET1	0	MSKCC	GRCh37	10	70333864	70333864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	37	489	0	ENST00000373644.4:c.1769G>A	p.Arg590Gln	p.R590Q	ENST00000373644	NM_030625.2	590	cGa/cAa																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88681426	88681426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	68	725	0	ENST00000372037.3:c.1316A>G	p.Glu439Gly	p.E439G	ENST00000372037	NM_004329.2	439	gAg/gGg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	162	617	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724723	112724723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	65	603	1	ENST00000369452.4:c.607C>T	p.Arg203Cys	p.R203C	ENST00000369452	NM_007373.3	203	Cgt/Tgt																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741688	17741688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	68	536	0	ENST00000250003.3:c.359G>A	p.Arg120His	p.R120H	ENST00000250003	NM_002478.4	120	cGc/cAc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180441	94180441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139461096		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	77	663	0	ENST00000323929.3:c.1727G>A	p.Arg576Gln	p.R576Q	ENST00000323929	NM_005591.3	576	cGa/cAa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94201042	94201042	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	72	424	0	ENST00000323929.3:c.1035A>C	p.Glu345Asp	p.E345D	ENST00000323929	NM_005591.3	345	gaA/gaC																																																																														
MRE11A	0	MSKCC	GRCh37	11	94212851	94212851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	31	545	2	ENST00000323929.3:c.391G>A	p.Asp131Asn	p.D131N	ENST00000323929	NM_005591.3	131	Gat/Aat																																																																														
PGR	0	MSKCC	GRCh37	11	100933469	100933469	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	29	236	0	ENST00000325455.5:c.1921A>C	p.Lys641Gln	p.K641Q	ENST00000325455	NM_001202474.3	641	Aag/Cag																																																																														
YAP1	0	MSKCC	GRCh37	11	102076740	102076740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	62	609	3	ENST00000282441.5:c.919C>T	p.Arg307Ter	p.R307*	ENST00000282441	NM_001130145.2	307	Cga/Tga																																																																														
ATM	0	MSKCC	GRCh37	11	108106403	108106403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	19	225	1	ENST00000278616.4:c.338C>T	p.Pro113Leu	p.P113L	ENST00000278616	NM_000051.3	113	cCt/cTt																																																																														
ATM	0	MSKCC	GRCh37	11	108106517	108106517	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	49	474	0	ENST00000278616.4:c.452C>A	p.Ser151Tyr	p.S151Y	ENST00000278616	NM_000051.3	151	tCt/tAt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374486	118374486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	47	486	0	ENST00000534358.1:c.7879C>T	p.Arg2627Cys	p.R2627C	ENST00000534358	NM_005933.3	2627	Cgt/Tgt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375245	118375245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	38	418	0	ENST00000534358.1:c.8638C>T	p.Leu2880Phe	p.L2880F	ENST00000534358	NM_005933.3	2880	Ctt/Ttt																																																																														
CBL	0	MSKCC	GRCh37	11	119169179	119169179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150811339		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	91	489	0	ENST00000264033.4:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000264033	NM_005188.3	788	cGa/cAa																																																																														
KDM5A	0	MSKCC	GRCh37	12	402275	402275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	80	702	1	ENST00000399788.2:c.4516C>T	p.Arg1506Trp	p.R1506W	ENST00000399788	NM_001042603.1	1506	Cgg/Tgg																																																																														
KDM5A	0	MSKCC	GRCh37	12	406231	406231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	49	486	0	ENST00000399788.2:c.4210T>C	p.Ser1404Pro	p.S1404P	ENST00000399788	NM_001042603.1	1404	Tct/Cct																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18544156	18544156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	58	541	0	ENST00000266497.5:c.1973C>T	p.Ala658Val	p.A658V	ENST00000266497		658	gCc/gTc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18800901	18800901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	36	566	0	ENST00000266497.5:c.4277G>A	p.Arg1426Gln	p.R1426Q	ENST00000266497		1426	cGa/cAa																																																																														
ARID2	0	MSKCC	GRCh37	12	46244092	46244092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	54	514	0	ENST00000334344.6:c.2186C>T	p.Pro729Leu	p.P729L	ENST00000334344	NM_152641.2	729	cCt/cTt																																																																														
ARID2	0	MSKCC	GRCh37	12	46244925	46244925	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	52	614	0	ENST00000334344.6:c.3019T>G	p.Leu1007Val	p.L1007V	ENST00000334344	NM_152641.2	1007	Tta/Gta																																																																														
ARID2	0	MSKCC	GRCh37	12	46254704	46254704	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	43	483	0	ENST00000334344.6:c.4894T>G	p.Phe1632Val	p.F1632V	ENST00000334344	NM_152641.2	1632	Ttc/Gtc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427951	49427951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	104	701	1	ENST00000301067.7:c.10639C>T	p.Arg3547Cys	p.R3547C	ENST00000301067	NM_003482.3	3547	Cgc/Tgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433722	49433722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	65	954	2	ENST00000301067.7:c.7831C>T	p.Arg2611Cys	p.R2611C	ENST00000301067	NM_003482.3	2611	Cgc/Tgc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	59	584	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																																																														
GLI1	0	MSKCC	GRCh37	12	57864505	57864505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	38	664	0	ENST00000228682.2:c.1982G>A	p.Gly661Asp	p.G661D	ENST00000228682	NM_005269.2	661	gGc/gAc																																																																														
TBX3	0	MSKCC	GRCh37	12	115115397	115115397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	75	630	0	ENST00000257566.3:c.929G>A	p.Arg310Gln	p.R310Q	ENST00000257566	NM_016569.3	310	cGa/cAa																																																																														
TBX3	0	MSKCC	GRCh37	12	115120675	115120675	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	114	922	1	ENST00000257566.3:c.331G>T	p.Glu111Ter	p.E111*	ENST00000257566	NM_016569.3	111	Gaa/Taa																																																																														
TBX3	0	MSKCC	GRCh37	12	115120717	115120717	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	54	790	0	ENST00000257566.3:c.289G>T	p.Glu97Ter	p.E97*	ENST00000257566	NM_016569.3	97	Gaa/Taa																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426689	121426689	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	70	722	0	ENST00000257555.6:c.380A>G	p.Asn127Ser	p.N127S	ENST00000257555		127	aAc/aGc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121431482	121431482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	65	620	0	ENST00000257555.6:c.686G>A	p.Arg229Gln	p.R229Q	ENST00000257555		229	cGa/cAa																																																																														
HNF1A	0	MSKCC	GRCh37	12	121437163	121437163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	94	1020	1	ENST00000257555.6:c.1594G>A	p.Ala532Thr	p.A532T	ENST00000257555		532	Gcc/Acc																																																																														
POLE	0	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	66	492	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																																																														
LATS2	0	MSKCC	GRCh37	13	21619894	21619894	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55842804		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	71	478	0	ENST00000382592.4:c.272C>T	p.Ser91Leu	p.S91L	ENST00000382592	NM_014572.2	91	tCg/tTg																																																																														
FLT3	0	MSKCC	GRCh37	13	28597512	28597512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	99	640	0	ENST00000241453.7:c.2393G>T	p.Gly798Val	p.G798V	ENST00000241453	NM_004119.2	798	gGa/gTa																																																																														
FLT3	0	MSKCC	GRCh37	13	28636162	28636162	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	78	589	0	ENST00000241453.7:c.210G>T	p.Gln70His	p.Q70H	ENST00000241453	NM_004119.2	70	caG/caT																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912588	32912588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	59	639	0	ENST00000380152.3:c.4096C>A	p.Leu1366Ile	p.L1366I	ENST00000380152		1366	Ctt/Att																																																																														
BRCA2	0	MSKCC	GRCh37	13	32915238	32915238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	63	715	1	ENST00000380152.3:c.6746C>T	p.Ala2249Val	p.A2249V	ENST00000380152		2249	gCc/gTc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32920972	32920972	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	62	551	0	ENST00000380152.3:c.6946A>C	p.Lys2316Gln	p.K2316Q	ENST00000380152		2316	Aaa/Caa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972616	32972616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	79	520	0	ENST00000380152.3:c.9966G>T	p.Met3322Ile	p.M3322I	ENST00000380152		3322	atG/atT																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134288	41134288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	43	434	0	ENST00000379561.5:c.1340C>T	p.Ser447Leu	p.S447L	ENST00000379561	NM_002015.3	447	tCg/tTg																																																																														
RB1	0	MSKCC	GRCh37	13	48916735	48916735	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	25	389	1	ENST00000267163.4:c.265G>T	p.Gly89Ter	p.G89*	ENST00000267163	NM_000321.2	89	Gga/Tga																																																																														
DIS3	0	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	15	337	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																														
DIS3	0	MSKCC	GRCh37	13	73350083	73350083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	31	439	1	ENST00000377767.4:c.802G>A	p.Asp268Asn	p.D268N	ENST00000377767	NM_014953.3	268	Gac/Aac																																																																														
ERCC5	0	MSKCC	GRCh37	13	103518233	103518233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	45	338	0	ENST00000355739.4:c.2171C>T	p.Ser724Leu	p.S724L	ENST00000355739	NM_000123.3	724	tCg/tTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435406	110435406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35927012		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	71	740	5	ENST00000375856.3:c.2995G>A	p.Val999Met	p.V999M	ENST00000375856	NM_003749.2	999	Gtg/Atg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435726	110435726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	46	330	1	ENST00000375856.3:c.2675G>A	p.Arg892His	p.R892H	ENST00000375856	NM_003749.2	892	cGc/cAc																																																																														
TSHR	0	MSKCC	GRCh37	14	81574754	81574754	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	45	534	0	ENST00000298171.2:c.650A>G	p.Asp217Gly	p.D217G	ENST00000298171	NM_000369.2	217	gAc/gGc																																																																														
DICER1	0	MSKCC	GRCh37	14	95571504	95571504	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	45	517	0	ENST00000343455.3:c.3173T>G	p.Leu1058Arg	p.L1058R	ENST00000343455	NM_177438.2	1058	cTt/cGt																																																																														
MGA	0	MSKCC	GRCh37	15	41988691	41988691	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	38	552	0	ENST00000219905.7:c.1483C>T	p.Arg495Ter	p.R495*	ENST00000219905	NM_001164273.1	495	Cga/Tga																																																																														
MGA	0	MSKCC	GRCh37	15	42058845	42058845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	40	330	1	ENST00000219905.7:c.8565C>A	p.Phe2855Leu	p.F2855L	ENST00000219905	NM_001164273.1	2855	ttC/ttA																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43700270	43700270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	76	736	0	ENST00000382044.4:c.5617C>T	p.Pro1873Ser	p.P1873S	ENST00000382044	NM_001141980.1	1873	Cct/Tct																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748182	43748182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	66	714	0	ENST00000382044.4:c.2624C>A	p.Ala875Asp	p.A875D	ENST00000382044	NM_001141980.1	875	gCt/gAt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43749089	43749089	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	66	819	0	ENST00000382044.4:c.1717C>A	p.Leu573Met	p.L573M	ENST00000382044	NM_001141980.1	573	Ctg/Atg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43749386	43749386	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	54	561	0	ENST00000382044.4:c.1420G>T	p.Glu474Ter	p.E474*	ENST00000382044	NM_001141980.1	474	Gaa/Taa																																																																														
B2M	0	MSKCC	GRCh37	15	45007702	45007702	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	26	383	0	ENST00000558401.1:c.149T>G	p.Phe50Cys	p.F50C	ENST00000558401	NM_004048.2	50	tTt/tGt																																																																														
CD276	0	MSKCC	GRCh37	15	73994847	73994847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	15	173	0	ENST00000318443.5:c.331C>T	p.Arg111Cys	p.R111C	ENST00000318443	NM_001024736.1	111	Cgc/Tgc																																																																														
TSC2	0	MSKCC	GRCh37	16	2103398	2103398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200045926		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	77	823	0	ENST00000219476.3:c.281C>T	p.Pro94Leu	p.P94L	ENST00000219476	NM_000548.3	94	cCg/cTg																																																																														
SLX4	0	MSKCC	GRCh37	16	3641150	3641150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	107	1210	0	ENST00000294008.3:c.2489C>T	p.Ala830Val	p.A830V	ENST00000294008	NM_032444.2	830	gCg/gTg																																																																														
SLX4	0	MSKCC	GRCh37	16	3644567	3644567	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115866745		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	91	785	0	ENST00000294008.3:c.2047G>A	p.Ala683Thr	p.A683T	ENST00000294008	NM_032444.2	683	Gcc/Acc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778398	3778398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	41	572	0	ENST00000262367.5:c.6650G>A	p.Gly2217Glu	p.G2217E	ENST00000262367	NM_004380.2	2217	gGg/gAg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3828177	3828177	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	28	307	0	ENST00000262367.5:c.1948T>C	p.Tyr650His	p.Y650H	ENST00000262367	NM_004380.2	650	Tat/Cat																																																																														
CREBBP	0	MSKCC	GRCh37	16	3842041	3842041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	52	525	3	ENST00000262367.5:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000262367	NM_004380.2	424	cGa/cAa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858227	9858227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	30	462	1	ENST00000330684.3:c.3174C>A	p.His1058Gln	p.H1058Q	ENST00000330684	NM_001134407.1	1058	caC/caA																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943680	9943680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	63	649	0	ENST00000330684.3:c.1261G>T	p.Asp421Tyr	p.D421Y	ENST00000330684	NM_001134407.1	421	Gac/Tac																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041557	14041557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	41	480	0	ENST00000311895.7:c.2104C>T	p.Arg702Trp	p.R702W	ENST00000311895	NM_005236.2	702	Cgg/Tgg																																																																														
NUP93	0	MSKCC	GRCh37	16	56862895	56862895	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	19	337	0	ENST00000308159.5:c.801G>T	p.Lys267Asn	p.K267N	ENST00000308159	NM_014669.4	267	aaG/aaT																																																																														
CDH1	0	MSKCC	GRCh37	16	68845625	68845625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	66	695	0	ENST00000261769.5:c.871G>A	p.Asp291Asn	p.D291N	ENST00000261769	NM_004360.3	291	Gat/Aat																																																																														
CDH1	0	MSKCC	GRCh37	16	68867391	68867391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34507583		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	55	379	0	ENST00000261769.5:c.2638G>A	p.Glu880Lys	p.E880K	ENST00000261769	NM_004360.3	880	Gag/Aag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821926	72821926	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	22	284	1	ENST00000268489.5:c.10249G>T	p.Glu3417Ter	p.E3417*	ENST00000268489	NM_006885.3	3417	Gaa/Taa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831566	72831566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	68	673	0	ENST00000268489.5:c.5015G>T	p.Gly1672Val	p.G1672V	ENST00000268489	NM_006885.3	1672	gGc/gTc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81929495	81929495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	58	592	0	ENST00000359376.3:c.1156G>A	p.Val386Met	p.V386M	ENST00000359376	NM_002661.3	386	Gtg/Atg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347959	89347959	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201160642		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	60	854	1	ENST00000301030.4:c.4991C>T	p.Ala1664Val	p.A1664V	ENST00000301030	NM_001256183.1	1664	gCg/gTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348857	89348857	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	81	972	1	ENST00000301030.4:c.4093C>T	p.Arg1365Ter	p.R1365*	ENST00000301030	NM_001256183.1	1365	Cga/Tga																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350281	89350281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200971432		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	91	820	1	ENST00000301030.4:c.2669G>A	p.Arg890Gln	p.R890Q	ENST00000301030	NM_001256183.1	890	cGg/cAg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350635	89350635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1280	71	1149	2	ENST00000301030.4:c.2315G>A	p.Arg772Gln	p.R772Q	ENST00000301030	NM_001256183.1	772	cGg/cAg																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7976482	7976482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	44	462	3	ENST00000319144.4:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000319144	NM_001139.2	637	cGa/cAa																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7982784	7982784	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	57	871	0	ENST00000319144.4:c.1001A>G	p.Gln334Arg	p.Q334R	ENST00000319144	NM_001139.2	334	cAg/cGg																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7984090	7984090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	37	473	0	ENST00000319144.4:c.536G>A	p.Gly179Asp	p.G179D	ENST00000319144	NM_001139.2	179	gGc/gAc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11998959	11998959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	30	419	0	ENST00000353533.5:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000353533	NM_003010.3	154	cGg/cAg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15960849	15960849	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	24	242	0	ENST00000268712.3:c.6371T>G	p.Leu2124Arg	p.L2124R	ENST00000268712	NM_006311.3	2124	cTt/cGt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15995309	15995309	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	50	507	0	ENST00000268712.3:c.2884C>T	p.Arg962Ter	p.R962*	ENST00000268712	NM_006311.3	962	Cga/Tga																																																																														
NF1	0	MSKCC	GRCh37	17	29556989	29556989	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	12	153	0	ENST00000358273.4:c.2987T>G	p.Val996Gly	p.V996G	ENST00000358273	NM_001042492.2	996	gTc/gGc																																																																														
NF1	0	MSKCC	GRCh37	17	29559807	29559807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	48	336	0	ENST00000358273.4:c.3404C>A	p.Ser1135Tyr	p.S1135Y	ENST00000358273	NM_001042492.2	1135	tCt/tAt																																																																														
NF1	0	MSKCC	GRCh37	17	29665144	29665144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	49	641	1	ENST00000358273.4:c.6806G>A	p.Arg2269His	p.R2269H	ENST00000358273	NM_001042492.2	2269	cGt/cAt																																																																														
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	31	414	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																																																														
CDK12	0	MSKCC	GRCh37	17	37619098	37619098	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	48	638	0	ENST00000447079.4:c.774T>G	p.Asn258Lys	p.N258K	ENST00000447079	NM_015083.1	258	aaT/aaG																																																																														
STAT5B	0	MSKCC	GRCh37	17	40369467	40369467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	45	602	2	ENST00000293328.3:c.1185G>T	p.Glu395Asp	p.E395D	ENST00000293328	NM_012448.3	395	gaG/gaT																																																																														
STAT3	0	MSKCC	GRCh37	17	40474351	40474351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	48	641	1	ENST00000264657.5:c.2050G>A	p.Gly684Arg	p.G684R	ENST00000264657	NM_139276.2	684	Gga/Aga																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244824	41244824	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	85	602	0	ENST00000357654.3:c.2724A>C	p.Glu908Asp	p.E908D	ENST00000357654	NM_007294.3	908	gaA/gaC																																																																														
AXIN2	0	MSKCC	GRCh37	17	63526198	63526198	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140344858		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	84	667	0	ENST00000307078.5:c.2428G>A	p.Asp810Asn	p.D810N	ENST00000307078	NM_004655.3	810	Gat/Aat																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532456	63532456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	48	764	0	ENST00000307078.5:c.2123C>T	p.Ser708Leu	p.S708L	ENST00000307078	NM_004655.3	708	tCg/tTg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532616	63532616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	87	814	3	ENST00000307078.5:c.1963G>A	p.Glu655Lys	p.E655K	ENST00000307078	NM_004655.3	655	Gaa/Aaa																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66519878	66519878	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	42	570	0	ENST00000358598.2:c.361G>T	p.Asp121Tyr	p.D121Y	ENST00000358598	NM_212471.2	121	Gat/Tat																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66522024	66522024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	47	358	0	ENST00000358598.2:c.679G>A	p.Asp227Asn	p.D227N	ENST00000358598	NM_212471.2	227	Gac/Aac																																																																														
RPTOR	0	MSKCC	GRCh37	17	78829330	78829330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	51	536	0	ENST00000306801.3:c.1381C>T	p.Pro461Ser	p.P461S	ENST00000306801	NM_020761.2	461	Ccc/Tcc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78938071	78938071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	64	775	0	ENST00000306801.3:c.3949G>A	p.Ala1317Thr	p.A1317T	ENST00000306801	NM_020761.2	1317	Gcc/Acc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39575891	39575891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	36	618	1	ENST00000262039.4:c.824G>A	p.Arg275Gln	p.R275Q	ENST00000262039	NM_002647.2	275	cGg/cAg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45396936	45396936	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	46	372	0	ENST00000262160.6:c.237-1G>A		p.X79_splice	ENST00000262160	NM_005901.5	79																																																																															
MALT1	0	MSKCC	GRCh37	18	56348554	56348554	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	31	342	0	ENST00000348428.3:c.362T>G	p.Leu121Arg	p.L121R	ENST00000348428	NM_006785.3	121	cTt/cGt																																																																														
MALT1	0	MSKCC	GRCh37	18	56414988	56414988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	77	620	0	ENST00000348428.3:c.2389C>A	p.His797Asn	p.H797N	ENST00000348428	NM_006785.3	797	Cat/Aat																																																																														
DOT1L	0	MSKCC	GRCh37	19	2227079	2227079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	64	676	0	ENST00000398665.3:c.4559C>T	p.Ser1520Leu	p.S1520L	ENST00000398665	NM_032482.2	1520	tCg/tTg																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4097279	4097279	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	55	729	0	ENST00000262948.5:c.982G>A	p.Glu328Lys	p.E328K	ENST00000262948	NM_030662.3	328	Gag/Aag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244274	5244274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	87	799	1	ENST00000357368.4:c.1208C>T	p.Ser403Leu	p.S403L	ENST00000357368	NM_002850.3	403	tCg/tTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	63	716	2	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																														
CALR	0	MSKCC	GRCh37	19	13054435	13054435	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144233437		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	39	589	0	ENST00000316448.5:c.1045G>A	p.Val349Ile	p.V349I	ENST00000316448	NM_004343.3	349	Gta/Ata																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18271304	18271304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	76	820	0	ENST00000222254.8:c.346G>A	p.Glu116Lys	p.E116K	ENST00000222254	NM_005027.3	116	Gag/Aag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221667	36221667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	76	993	1	ENST00000222270.7:c.5336G>A	p.Arg1779Gln	p.R1779Q	ENST00000222270	NM_014727.1	1779	cGa/cAa																																																																														
CIC	0	MSKCC	GRCh37	19	42795382	42795382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	29	551	0	ENST00000575354.2:c.2462G>A	p.Gly821Glu	p.G821E	ENST00000575354	NM_015125.3	821	gGa/gAa																																																																														
CIC	0	MSKCC	GRCh37	19	42799258	42799258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	62	649	1	ENST00000575354.2:c.4742C>T	p.Ser1581Leu	p.S1581L	ENST00000575354	NM_015125.3	1581	tCg/tTg																																																																														
POLD1	0	MSKCC	GRCh37	19	50905896	50905896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	83	928	0	ENST00000440232.2:c.868G>A	p.Val290Met	p.V290M	ENST00000440232	NM_002691.3	290	Gtg/Atg																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25964903	25964903	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs561088610		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	37	333	0	ENST00000435504.4:c.4303C>T	p.Arg1435Trp	p.R1435W	ENST00000435504		1435	Cgg/Tgg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965136	25965136	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	36	533	0	ENST00000435504.4:c.4070T>C	p.Val1357Ala	p.V1357A	ENST00000435504		1357	gTc/gCc																																																																														
SOS1	0	MSKCC	GRCh37	2	39262387	39262387	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	55	918	0	ENST00000402219.2:c.1040T>C	p.Val347Ala	p.V347A	ENST00000402219	NM_005633.3	347	gTt/gCt																																																																														
MSH6	0	MSKCC	GRCh37	2	48025814	48025814	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	25	415	0	ENST00000234420.5:c.692T>C	p.Val231Ala	p.V231A	ENST00000234420	NM_000179.2	231	gTa/gCa																																																																														
MSH6	0	MSKCC	GRCh37	2	48026606	48026606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	77	432	0	ENST00000234420.5:c.1484G>A	p.Arg495Gln	p.R495Q	ENST00000234420	NM_000179.2	495	cGa/cAa																																																																														
MSH6	0	MSKCC	GRCh37	2	48033753	48033753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	45	455	0	ENST00000234420.5:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000234420	NM_000179.2	1322	Gaa/Taa																																																																														
MSH6	0	MSKCC	GRCh37	2	48033781	48033781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	42	429	0	ENST00000234420.5:c.3992G>A	p.Arg1331Gln	p.R1331Q	ENST00000234420	NM_000179.2	1331	cGa/cAa																																																																														
REL	0	MSKCC	GRCh37	2	61147184	61147184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	45	472	0	ENST00000295025.8:c.862G>A	p.Gly288Ser	p.G288S	ENST00000295025	NM_002908.2	288	Ggc/Agc																																																																														
XPO1	0	MSKCC	GRCh37	2	61726963	61726963	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	64	575	0	ENST00000401558.2:c.475A>G	p.Thr159Ala	p.T159A	ENST00000401558	NM_003400.3	159	Acc/Gcc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99152628	99152628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	73	610	0	ENST00000074304.5:c.424G>A	p.Asp142Asn	p.D142N	ENST00000074304	NM_001134224.1	142	Gat/Aat																																																																														
INPP4A	0	MSKCC	GRCh37	2	99155420	99155420	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	63	573	0	ENST00000074304.5:c.646C>T	p.Arg216Ter	p.R216*	ENST00000074304	NM_001134224.1	216	Cga/Tga																																																																														
INPP4A	0	MSKCC	GRCh37	2	99189323	99189323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	93	628	0	ENST00000074304.5:c.2579G>A	p.Arg860Gln	p.R860Q	ENST00000074304	NM_001134224.1	860	cGg/cAg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99189373	99189373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	60	730	1	ENST00000074304.5:c.2629C>A	p.Leu877Ile	p.L877I	ENST00000074304	NM_001134224.1	877	Ctc/Atc																																																																														
PMS1	0	MSKCC	GRCh37	2	190656563	190656563	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	23	233	0	ENST00000441310.2:c.28C>T	p.Arg10Ter	p.R10*	ENST00000441310	NM_000534.4	10	Cga/Tga																																																																														
PMS1	0	MSKCC	GRCh37	2	190728891	190728891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	61	526	0	ENST00000441310.2:c.2279G>T	p.Arg760Ile	p.R760I	ENST00000441310	NM_000534.4	760	aGa/aTa																																																																														
PMS1	0	MSKCC	GRCh37	2	190732553	190732553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	35	546	0	ENST00000441310.2:c.2371G>A	p.Val791Ile	p.V791I	ENST00000441310	NM_000534.4	791	Gtt/Att																																																																														
SF3B1	0	MSKCC	GRCh37	2	198268455	198268455	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	54	602	0	ENST00000335508.6:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000335508	NM_012433.2	525	Gaa/Taa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212989562	212989562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	40	370	0	ENST00000342788.4:c.149G>A	p.Arg50His	p.R50H	ENST00000342788	NM_005235.2	50	cGc/cAc																																																																														
IRS1	0	MSKCC	GRCh37	2	227662211	227662211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	71	909	1	ENST00000305123.5:c.1244C>T	p.Ser415Leu	p.S415L	ENST00000305123	NM_005544.2	415	tCg/tTg																																																																														
TOP1	0	MSKCC	GRCh37	20	39721144	39721144	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	49	677	0	ENST00000361337.2:c.647A>C	p.Lys216Thr	p.K216T	ENST00000361337	NM_003286.2	216	aAg/aCg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46251038	46251038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	38	501	3	ENST00000371998.3:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000371998		16	cGa/cAa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36421192	36421192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	56	477	1	ENST00000300305.3:c.5C>T	p.Ala2Val	p.A2V	ENST00000300305		2	gCt/gTt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	50	416	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
MAPK1	0	MSKCC	GRCh37	22	22162044	22162044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	46	577	0	ENST00000215832.6:c.211G>A	p.Glu71Lys	p.E71K	ENST00000215832	NM_002745.4	71	Gag/Aag																																																																														
EP300	0	MSKCC	GRCh37	22	41513220	41513220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	59	623	1	ENST00000263253.7:c.124G>A	p.Asp42Asn	p.D42N	ENST00000263253	NM_001429.3	42	Gac/Aac																																																																														
EP300	0	MSKCC	GRCh37	22	41565530	41565530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	69	490	0	ENST00000263253.7:c.4196A>G	p.Asp1399Gly	p.D1399G	ENST00000263253	NM_001429.3	1399	gAt/gGt																																																																														
SETD2	0	MSKCC	GRCh37	3	47058735	47058735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	38	368	0	ENST00000409792.3:c.7543G>A	p.Gly2515Ser	p.G2515S	ENST00000409792	NM_014159.6	2515	Ggt/Agt																																																																														
SETD2	0	MSKCC	GRCh37	3	47108598	47108598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	33	527	0	ENST00000409792.3:c.6071G>A	p.Arg2024Gln	p.R2024Q	ENST00000409792	NM_014159.6	2024	cGa/cAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47165456	47165456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	42	453	0	ENST00000409792.3:c.670G>A	p.Ala224Thr	p.A224T	ENST00000409792	NM_014159.6	224	Gca/Aca																																																																														
RHOA	0	MSKCC	GRCh37	3	49397700	49397700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	86	627	0	ENST00000418115.1:c.524C>T	p.Thr175Met	p.T175M	ENST00000418115	NM_001664.2	175	aCg/aTg																																																																														
MST1R	0	MSKCC	GRCh37	3	49940079	49940079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	46	699	2	ENST00000296474.3:c.964C>T	p.Arg322Trp	p.R322W	ENST00000296474	NM_002447.2	322	Cgg/Tgg																																																																														
MST1R	0	MSKCC	GRCh37	3	49940529	49940529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	94	839	0	ENST00000296474.3:c.514G>A	p.Asp172Asn	p.D172N	ENST00000296474	NM_002447.2	172	Gat/Aat																																																																														
MITF	0	MSKCC	GRCh37	3	70005639	70005639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	50	634	0	ENST00000352241.4:c.971G>A	p.Arg324His	p.R324H	ENST00000352241	NM_198159.2	324	cGc/cAc																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73096477	73096477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	26	324	0	ENST00000356692.5:c.257G>T	p.Arg86Ile	p.R86I	ENST00000356692		86	aGa/aTa																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665131	138665131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	46	582	4	ENST00000330315.3:c.434G>A	p.Arg145His	p.R145H	ENST00000330315	NM_023067.3	145	cGc/cAc																																																																														
WWTR1	0	MSKCC	GRCh37	3	149290746	149290746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	72	604	0	ENST00000360632.3:c.473C>T	p.Ala158Val	p.A158V	ENST00000360632	NM_015472.4	158	gCg/gTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	24	427	1	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																																																														
MAP3K13	9175	MSKCC	GRCh37	3	185183551	185183551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	37	454	0	ENST00000265026.3:c.1405C>T	p.Arg469Cys	p.R469C	ENST00000265026	NM_004721.4	469	Cgt/Tgt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808635	1808635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	79	849	1	ENST00000260795.2:c.2248C>T	p.Arg750Cys	p.R750C	ENST00000260795		750	Cgt/Tgt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55129884	55129884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	51	648	2	ENST00000257290.5:c.418G>A	p.Val140Met	p.V140M	ENST00000257290	NM_006206.4	140	Gtg/Atg																																																																														
KIT	0	MSKCC	GRCh37	4	55565858	55565858	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	74	725	0	ENST00000288135.5:c.682G>T	p.Glu228Ter	p.E228*	ENST00000288135	NM_000222.2	228	Gaa/Taa																																																																														
KDR	0	MSKCC	GRCh37	4	55958788	55958788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	77	686	0	ENST00000263923.4:c.3065G>A	p.Arg1022Gln	p.R1022Q	ENST00000263923	NM_002253.2	1022	cGa/cAa																																																																														
KDR	0	MSKCC	GRCh37	4	55962438	55962438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	50	621	0	ENST00000263923.4:c.2686C>T	p.Leu896Phe	p.L896F	ENST00000263923	NM_002253.2	896	Ctc/Ttc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217270	66217270	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	30	437	0	ENST00000273854.3:c.2345G>T	p.Arg782Ile	p.R782I	ENST00000273854	NM_004439.5	782	aGa/aTa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217310	66217310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	30	278	0	ENST00000273854.3:c.2305G>A	p.Asp769Asn	p.D769N	ENST00000273854	NM_004439.5	769	Gat/Aat																																																																														
TET2	0	MSKCC	GRCh37	4	106164772	106164772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	35	420	1	ENST00000380013.4:c.3640C>T	p.Arg1214Trp	p.R1214W	ENST00000380013	NM_001127208.2	1214	Cgg/Tgg																																																																														
INPP4B	0	MSKCC	GRCh37	4	142950019	142950019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	53	527	0	ENST00000262992.4:c.2691G>T	p.Lys897Asn	p.K897N	ENST00000262992	NM_001101669.1	897	aaG/aaT																																																																														
INPP4B	0	MSKCC	GRCh37	4	143235873	143235873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	34	394	0	ENST00000262992.4:c.415G>A	p.Glu139Lys	p.E139K	ENST00000262992	NM_001101669.1	139	Gaa/Aaa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153253789	153253789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	31	465	0	ENST00000281708.4:c.944C>A	p.Ala315Asp	p.A315D	ENST00000281708	NM_033632.3	315	gCt/gAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187628125	187628125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	53	761	0	ENST00000441802.2:c.2857G>A	p.Asp953Asn	p.D953N	ENST00000441802	NM_005245.3	953	Gat/Aat																																																																														
SDHA	0	MSKCC	GRCh37	5	228414	228414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	42	511	0	ENST00000264932.6:c.736C>T	p.Arg246Cys	p.R246C	ENST00000264932	NM_004168.2	246	Cgc/Tgc																																																																														
SDHA	0	MSKCC	GRCh37	5	233687	233687	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200526913		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	39	378	0	ENST00000264932.6:c.991G>A	p.Ala331Thr	p.A331T	ENST00000264932	NM_004168.2	331	Gcc/Acc																																																																														
TERT	0	MSKCC	GRCh37	5	1294024	1294024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	68	1123	1	ENST00000310581.5:c.977C>T	p.Ala326Val	p.A326V	ENST00000310581	NM_198253.2	326	gCc/gTc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31431691	31431691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	41	477	0	ENST00000344624.3:c.3137C>T	p.Ala1046Val	p.A1046V	ENST00000344624		1046	gCg/gTg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31486610	31486610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	43	521	0	ENST00000344624.3:c.1902G>T	p.Glu634Asp	p.E634D	ENST00000344624		634	gaG/gaT																																																																														
IL7R	0	MSKCC	GRCh37	5	35876188	35876188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	48	664	2	ENST00000303115.3:c.980C>T	p.Thr327Met	p.T327M	ENST00000303115	NM_002185.3	327	aCg/aTg																																																																														
RICTOR	0	MSKCC	GRCh37	5	39003721	39003721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	29	491	0	ENST00000357387.3:c.199C>A	p.Leu67Ile	p.L67I	ENST00000357387	NM_152756.3	67	Ctt/Att																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178095	56178095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	29	359	0	ENST00000399503.3:c.3068G>A	p.Arg1023His	p.R1023H	ENST00000399503	NM_005921.1	1023	cGc/cAc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67576819	67576819	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	61	543	1	ENST00000274335.5:c.901C>T	p.Arg301Ter	p.R301*	ENST00000274335		301	Cga/Tga																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	52	342	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	46	461	0	ENST00000274335.5:c.1727_1729delCGA	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																														
MSH3	0	MSKCC	GRCh37	5	79966007	79966007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	78	748	1	ENST00000265081.6:c.671G>A	p.Arg224Gln	p.R224Q	ENST00000265081	NM_002439.4	224	cGg/cAg																																																																														
MSH3	0	MSKCC	GRCh37	5	80057372	80057372	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	44	392	0	ENST00000265081.6:c.1771A>C	p.Asn591His	p.N591H	ENST00000265081	NM_002439.4	591	Aat/Cat																																																																														
APC	0	MSKCC	GRCh37	5	112174554	112174554	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	34	487	0	ENST00000257430.4:c.3263A>C	p.Lys1088Thr	p.K1088T	ENST00000257430	NM_000038.5	1088	aAg/aCg																																																																														
APC	0	MSKCC	GRCh37	5	112175793	112175793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	32	270	0	ENST00000257430.4:c.4502C>A	p.Ser1501Tyr	p.S1501Y	ENST00000257430	NM_000038.5	1501	tCt/tAt																																																																														
RAD50	0	MSKCC	GRCh37	5	131977919	131977919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	38	571	0	ENST00000265335.6:c.3802A>G	p.Thr1268Ala	p.T1268A	ENST00000265335		1268	Act/Gct																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149501544	149501544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	75	633	1	ENST00000261799.4:c.2243C>T	p.Ser748Leu	p.S748L	ENST00000261799	NM_002609.3	748	tCg/tTg																																																																														
NSD1	0	MSKCC	GRCh37	5	176673711	176673711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	51	504	0	ENST00000439151.2:c.4411C>T	p.Arg1471Ter	p.R1471*	ENST00000439151	NM_022455.4	1471	Cga/Tga																																																																														
NSD1	0	MSKCC	GRCh37	5	176678813	176678813	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	56	473	0	ENST00000439151.2:c.4724A>C	p.Glu1575Ala	p.E1575A	ENST00000439151	NM_022455.4	1575	gAg/gCg																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045919	26045919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	66	455	0	ENST00000540144.1:c.281A>G	p.Gln94Arg	p.Q94R	ENST00000540144	NM_003531.2	94	cAg/cGg																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858492	27858492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	23	286	0	ENST00000359303.2:c.79C>T	p.Arg27Cys	p.R27C	ENST00000359303	NM_003535.2	27	Cgc/Tgc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324066	31324066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	25	424	0	ENST00000412585.2:c.497T>C	p.Ile166Thr	p.I166T	ENST00000412585	NM_005514.6	166	aTc/aCc																																																																														
TAP1	0	MSKCC	GRCh37	6	32821103	32821103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	82	992	0	ENST00000354258.4:c.491G>A	p.Gly164Asp	p.G164D	ENST00000354258	NM_000593.5	164	gGc/gAc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956553	93956553	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	44	328	0	ENST00000369303.4:c.2683C>T	p.Arg895Ter	p.R895*	ENST00000369303	NM_004440.3	895	Cga/Tga																																																																														
SESN1	0	MSKCC	GRCh37	6	109313997	109313997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	33	464	2	ENST00000436639.2:c.1226G>A	p.Arg409His	p.R409H	ENST00000436639	NM_014454.2	409	cGt/cAt																																																																														
ROS1	0	MSKCC	GRCh37	6	117609954	117609954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	48	432	0	ENST00000368508.3:c.6745G>A	p.Asp2249Asn	p.D2249N	ENST00000368508	NM_002944.2	2249	Gat/Aat																																																																														
ROS1	0	MSKCC	GRCh37	6	117686764	117686764	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	65	637	0	ENST00000368508.3:c.2953G>T	p.Glu985Ter	p.E985*	ENST00000368508	NM_002944.2	985	Gaa/Taa																																																																														
ROS1	0	MSKCC	GRCh37	6	117715885	117715885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	27	485	0	ENST00000368508.3:c.873G>T	p.Gln291His	p.Q291H	ENST00000368508	NM_002944.2	291	caG/caT																																																																														
LATS1	0	MSKCC	GRCh37	6	150005375	150005375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	55	681	0	ENST00000253339.5:c.850G>A	p.Val284Ile	p.V284I	ENST00000253339		284	Gta/Ata																																																																														
PARK2	0	MSKCC	GRCh37	6	162206827	162206827	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs56154308		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	40	629	0	ENST00000366898.1:c.848T>C	p.Leu283Pro	p.L283P	ENST00000366898	NM_004562.2	283	cTt/cCt																																																																														
CARD11	0	MSKCC	GRCh37	7	2951847	2951847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	82	739	1	ENST00000396946.4:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000396946	NM_032415.4	1035	Gaa/Aaa																																																																														
CARD11	0	MSKCC	GRCh37	7	2962888	2962888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	78	764	0	ENST00000396946.4:c.2020G>A	p.Asp674Asn	p.D674N	ENST00000396946	NM_032415.4	674	Gac/Aac																																																																														
PMS2	0	MSKCC	GRCh37	7	6035253	6035253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	34	405	0	ENST00000265849.7:c.815T>G	p.Phe272Cys	p.F272C	ENST00000265849	NM_000535.5	272	tTc/tGc																																																																														
ETV1	0	MSKCC	GRCh37	7	14027746	14027746	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	50	467	0	ENST00000405192.2:c.98A>C	p.Lys33Thr	p.K33T	ENST00000405192	NM_001163147.1	33	aAa/aCa																																																																														
EGFR	0	MSKCC	GRCh37	7	55229228	55229228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	32	378	0	ENST00000275493.2:c.1535C>A	p.Pro512His	p.P512H	ENST00000275493	NM_005228.3	512	cCc/cAc																																																																														
MET	0	MSKCC	GRCh37	7	116380982	116380982	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	52	669	0	ENST00000397752.3:c.1604T>G	p.Phe535Cys	p.F535C	ENST00000397752	NM_000245.2	535	tTt/tGt																																																																														
MET	0	MSKCC	GRCh37	7	116397538	116397538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	62	614	0	ENST00000397752.3:c.1910C>T	p.Ser637Phe	p.S637F	ENST00000397752	NM_000245.2	637	tCc/tTc																																																																														
SMO	0	MSKCC	GRCh37	7	128848674	128848674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	80	744	1	ENST00000249373.3:c.1339G>A	p.Glu447Lys	p.E447K	ENST00000249373	NM_005631.4	447	Gag/Aag																																																																														
BRAF	0	MSKCC	GRCh37	7	140534596	140534596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	67	533	2	ENST00000288602.6:c.317G>T	p.Gly106Val	p.G106V	ENST00000288602	NM_004333.4	106	gGa/gTa																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274849	38274849	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs779707422		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	66	506	0	ENST00000425967.3:c.1731C>A	p.Asn577Lys	p.N577K	ENST00000425967	NM_001174067.1	577	aaC/aaA																																																																														
FGFR1	0	MSKCC	GRCh37	8	38285450	38285450	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	78	670	0	ENST00000425967.3:c.703G>T	p.Gly235Ter	p.G235*	ENST00000425967	NM_001174067.1	235	Gga/Tga																																																																														
LYN	0	MSKCC	GRCh37	8	56859017	56859017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	51	579	0	ENST00000519728.1:c.143C>A	p.Ser48Tyr	p.S48Y	ENST00000519728	NM_002350.3	48	tCt/tAt																																																																														
PREX2	0	MSKCC	GRCh37	8	68931826	68931826	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	148	687	3	ENST00000288368.4:c.256G>T	p.Glu86Ter	p.E86*	ENST00000288368	NM_024870.2	86	Gaa/Taa																																																																														
PREX2	0	MSKCC	GRCh37	8	69020474	69020474	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	86	746	0	ENST00000288368.4:c.2846A>C	p.Lys949Thr	p.K949T	ENST00000288368	NM_024870.2	949	aAa/aCa																																																																														
JAK2	0	MSKCC	GRCh37	9	5080532	5080532	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	29	264	0	ENST00000381652.3:c.2284-1G>A		p.X762_splice	ENST00000381652	NM_004972.3	762																																																																															
PTPRD	0	MSKCC	GRCh37	9	8319841	8319841	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	32	382	0	ENST00000356435.5:c.5660T>C	p.Val1887Ala	p.V1887A	ENST00000356435		1887	gTa/gCa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8340450	8340450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200354236		P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	25	410	0	ENST00000356435.5:c.5146G>A	p.Ala1716Thr	p.A1716T	ENST00000356435		1716	Gct/Act																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518231	8518231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	31	356	1	ENST00000356435.5:c.1160C>T	p.Ser387Leu	p.S387L	ENST00000356435		387	tCg/tTg																																																																														
TEK	0	MSKCC	GRCh37	9	27169576	27169576	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	75	739	0	ENST00000380036.4:c.577T>C	p.Tyr193His	p.Y193H	ENST00000380036	NM_000459.3	193	Tat/Cat																																																																														
TEK	0	MSKCC	GRCh37	9	27206773	27206773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	78	601	0	ENST00000380036.4:c.2558C>T	p.Ala853Val	p.A853V	ENST00000380036	NM_000459.3	853	gCc/gTc																																																																														
TEK	0	MSKCC	GRCh37	9	27220064	27220064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	48	598	0	ENST00000380036.4:c.3121G>A	p.Gly1041Arg	p.G1041R	ENST00000380036	NM_000459.3	1041	Ggg/Agg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87325632	87325632	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	48	570	0	ENST00000277120.3:c.509A>G	p.Asp170Gly	p.D170G	ENST00000277120		170	gAc/gGc																																																																														
FANCC	0	MSKCC	GRCh37	9	98003012	98003012	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	63	351	0	ENST00000289081.3:c.264A>C	p.Lys88Asn	p.K88N	ENST00000289081	NM_000136.2	88	aaA/aaC																																																																														
PTCH1	0	MSKCC	GRCh37	9	98212188	98212188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	81	495	0	ENST00000331920.6:c.3484C>A	p.Leu1162Ile	p.L1162I	ENST00000331920	NM_000264.3	1162	Ctc/Atc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98242365	98242365	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	58	502	1	ENST00000331920.6:c.953A>C	p.Asp318Ala	p.D318A	ENST00000331920	NM_000264.3	318	gAt/gCt																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128201272	128201272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	86	632	2	ENST00000265960.3:c.1463C>T	p.Ser488Leu	p.S488L	ENST00000265960	NM_001006617.1	488	tCg/tTg																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128432172	128432172	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	44	550	2	ENST00000265960.3:c.274C>T	p.Arg92Ter	p.R92*	ENST00000265960	NM_001006617.1	92	Cga/Tga																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391476	139391476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	51	909	0	ENST00000277541.6:c.6715G>A	p.Asp2239Asn	p.D2239N	ENST00000277541	NM_017617.3	2239	Gac/Aac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139410037	139410037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	81	968	1	ENST00000277541.6:c.1801G>A	p.Glu601Lys	p.E601K	ENST00000277541	NM_017617.3	601	Gag/Aag																																																																														
TRAF2	0	MSKCC	GRCh37	9	139814713	139814713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	39	531	0	ENST00000247668.2:c.706G>A	p.Glu236Lys	p.E236K	ENST00000247668	NM_021138.3	236	Gag/Aag																																																																														
BCOR	0	MSKCC	GRCh37	X	39911436	39911436	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	69	642	0	ENST00000378444.4:c.5194G>T	p.Glu1732Ter	p.E1732*	ENST00000378444	NM_001123385.1	1732	Gaa/Taa																																																																														
BCOR	0	MSKCC	GRCh37	X	39913224	39913224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	86	650	1	ENST00000378444.4:c.4891G>A	p.Asp1631Asn	p.D1631N	ENST00000378444	NM_001123385.1	1631	Gat/Aat																																																																														
BCOR	0	MSKCC	GRCh37	X	39921447	39921447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	78	636	0	ENST00000378444.4:c.4373T>C	p.Val1458Ala	p.V1458A	ENST00000378444	NM_001123385.1	1458	gTc/gCc																																																																														
BCOR	0	MSKCC	GRCh37	X	39922070	39922070	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	61	878	0	ENST00000378444.4:c.4102T>G	p.Leu1368Val	p.L1368V	ENST00000378444	NM_001123385.1	1368	Ttg/Gtg																																																																														
RBM10	0	MSKCC	GRCh37	X	47039665	47039665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	86	856	0	ENST00000329236.7:c.883G>A	p.Asp295Asn	p.D295N	ENST00000329236	NM_001204466.1	295	Gac/Aac																																																																														
GATA1	0	MSKCC	GRCh37	X	48652261	48652261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	125	934	0	ENST00000376670.3:c.932G>A	p.Gly311Glu	p.G311E	ENST00000376670	NM_002049.3	311	gGa/gAa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53225199	53225199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	91	768	2	ENST00000375401.3:c.3019C>T	p.Arg1007Cys	p.R1007C	ENST00000375401	NM_004187.3	1007	Cgt/Tgt																																																																														
AMER1	0	MSKCC	GRCh37	X	63412029	63412029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	49	695	0	ENST00000330258.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000330258	NM_152424.3	380	Gag/Aag																																																																														
AMER1	0	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	56	986	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																														
AMER1	0	MSKCC	GRCh37	X	63412637	63412637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	38	611	1	ENST00000330258.3:c.530G>A	p.Arg177His	p.R177H	ENST00000330258	NM_152424.3	177	cGc/cAc																																																																														
AR	0	MSKCC	GRCh37	X	66765023	66765023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	90	962	0	ENST00000374690.3:c.35C>A	p.Pro12His	p.P12H	ENST00000374690	NM_000044.3	12	cCt/cAt																																																																														
MED12	0	MSKCC	GRCh37	X	70351421	70351421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	75	726	2	ENST00000374080.3:c.4069C>T	p.Arg1357Cys	p.R1357C	ENST00000374080		1357	Cgc/Tgc																																																																														
ATRX	0	MSKCC	GRCh37	X	76812950	76812950	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	39	602	0	ENST00000373344.5:c.6671A>C	p.Lys2224Thr	p.K2224T	ENST00000373344	NM_000489.3	2224	aAg/aCg																																																																														
ATRX	0	MSKCC	GRCh37	X	76849266	76849266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	67	688	0	ENST00000373344.5:c.6010G>T	p.Asp2004Tyr	p.D2004Y	ENST00000373344	NM_000489.3	2004	Gat/Tat																																																																														
ATRX	0	MSKCC	GRCh37	X	76937744	76937744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	57	516	0	ENST00000373344.5:c.3004G>T	p.Val1002Leu	p.V1002L	ENST00000373344	NM_000489.3	1002	Gta/Tta																																																																														
XIAP	0	MSKCC	GRCh37	X	123025163	123025163	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	35	517	0	ENST00000355640.3:c.1053T>G	p.Cys351Trp	p.C351W	ENST00000355640		351	tgT/tgG																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860058	152860058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	97	749	0	ENST00000406277.2:c.370C>T	p.Leu124Phe	p.L124F	ENST00000406277	NM_152274.4	124	Ctt/Ttt																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	163	798	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	82	505	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																														
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	56	238	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	119	655	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	134	970	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175836	24175837	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	107	679	0	ENST00000263121.7:c.1066_1067del	p.Leu356AspfsTer4	p.L356Dfs*4	ENST00000263121	NM_003073.3	355	aCT/a																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310914	123310914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	125	479	0	ENST00000358487.5:c.514G>A	p.Ala172Thr	p.A172T	ENST00000358487	NM_000141.4	172	Gcc/Acc																																																																														
TSC1	7248	MSKCC	GRCh37	9	135785964	135785964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs118203506		P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	122	640	2	ENST00000298552.3:c.1257del	p.Arg420GlyfsTer20	p.R420Gfs*20	ENST00000298552	NM_001162426.1	419	ccC/cc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523313	176523313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	161	744	2	ENST00000292408.4:c.1970C>T	p.Ala657Val	p.A657V	ENST00000292408	NM_213647.1	657	gCg/gTg																																																																														
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	66	349	0	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																																																														
SOX2	0	MSKCC	GRCh37	3	181430600	181430600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	109	362	0	ENST00000325404.1:c.452C>T	p.Ala151Val	p.A151V	ENST00000325404	NM_003106.3	151	gCg/gTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	57	729	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	174	872	0	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																														
ALK	0	MSKCC	GRCh37	2	29497965	29497965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	90	421	0	ENST00000389048.3:c.2041G>T	p.Val681Phe	p.V681F	ENST00000389048	NM_004304.4	681	Gtt/Ttt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106128	27106144	+	frameshift_variant	Frame_Shift_Del	DEL	CATGTTGTCTACTCGGT	CATGTTGTCTACTCGGT	-			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	122	579	0	ENST00000324856.7:c.5740_5756del	p.Met1914Ter	p.M1914*	ENST00000324856	NM_006015.4	1913	gaCATGTTGTCTACTCGGTct/gact																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106696	27106696	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	102	596	1	ENST00000324856.7:c.6307T>C	p.Phe2103Leu	p.F2103L	ENST00000324856	NM_006015.4	2103	Ttt/Ctt																																																																														
SESN2	83667	MSKCC	GRCh37	1	28599271	28599271	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1457528646		P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	162	882	0	ENST00000253063.3:c.722del	p.Pro241GlnfsTer6	p.P241Qfs*6	ENST00000253063	NM_031459.4	239	agC/ag																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798971	45798971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	127	772	0	ENST00000372115.3:c.332G>T	p.Arg111Met	p.R111M	ENST00000372115	NM_001048171.1	111	aGg/aTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89624271	89624272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	203	458	0	ENST00000371953.3:c.46dupT	p.Tyr16LeufsTer28	p.Y16Lfs*28	ENST00000371953	NM_000314.4	15	-/T																																																																														
ATM	0	MSKCC	GRCh37	11	108173755	108173755	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	72	362	0	ENST00000278616.4:c.5495A>G	p.Glu1832Gly	p.E1832G	ENST00000278616	NM_000051.3	1832	gAa/gGa																																																																														
KDM5A	0	MSKCC	GRCh37	12	464364	464364	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	147	665	0	ENST00000399788.2:c.830T>C	p.Met277Thr	p.M277T	ENST00000399788	NM_001042603.1	277	aTg/aCg																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871130	12871131	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	54	267	1	ENST00000228872.4:c.361dup	p.Ala121GlyfsTer4	p.A121Gfs*4	ENST00000228872	NM_004064.3	119	-/G																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495721	56495721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	80	480	0	ENST00000267101.3:c.3911A>G	p.His1304Arg	p.H1304R	ENST00000267101	NM_001982.3	1304	cAt/cGt																																																																														
RAD51B	0	MSKCC	GRCh37	14	68292199	68292199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	65	353	0	ENST00000487270.1:c.103C>A	p.Pro35Thr	p.P35T	ENST00000487270	NM_133509.3	35	Cca/Aca																																																																														
CBFB	0	MSKCC	GRCh37	16	67132659	67132659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	109	695	0	ENST00000412916.2:c.542G>A	p.Gly181Asp	p.G181D	ENST00000412916		181	gGt/gAt																																																																														
CTCF	0	MSKCC	GRCh37	16	67660554	67660554	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	150	803	0	ENST00000264010.4:c.1454del	p.His485LeufsTer26	p.H485Lfs*26	ENST00000264010	NM_006565.3	485	cAt/ct																																																																														
FANCA	0	MSKCC	GRCh37	16	89839686	89839686	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	116	549	0	ENST00000389301.3:c.2007G>T	p.Gln669His	p.Q669H	ENST00000389301	NM_000135.2	669	caG/caT																																																																														
BRD4	0	MSKCC	GRCh37	19	15353965	15353965	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	28	253	0	ENST00000263377.2:c.2915A>T	p.Gln972Leu	p.Q972L	ENST00000263377	NM_058243.2	972	cAg/cTg																																																																														
BRD4	0	MSKCC	GRCh37	19	15354052	15354052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	78	587	0	ENST00000263377.2:c.2828C>T	p.Pro943Leu	p.P943L	ENST00000263377	NM_058243.2	943	cCg/cTg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273104	18273105	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	132	792	0	ENST00000222254.8:c.1000dup	p.Asp334GlyfsTer26	p.D334Gfs*26	ENST00000222254	NM_005027.3	332	tgg/tGgg																																																																														
MSH6	0	MSKCC	GRCh37	2	48026525	48026525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	72	534	1	ENST00000234420.5:c.1403G>A	p.Arg468His	p.R468H	ENST00000234420	NM_000179.2	468	cGt/cAt																																																																														
MYD88	0	MSKCC	GRCh37	3	38180427	38180427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	75	546	0	ENST00000396334.3:c.275A>G	p.Gln92Arg	p.Q92R	ENST00000396334	NM_002468.4	92	cAg/cGg																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664900	138664900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	70	254	1	ENST00000330315.3:c.665C>T	p.Ala222Val	p.A222V	ENST00000330315	NM_023067.3	222	gCa/gTa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67590421	67590421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	49	373	0	ENST00000274335.5:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000274335		495	Gaa/Aaa																																																																														
PARK2	0	MSKCC	GRCh37	6	161771165	161771165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	143	702	2	ENST00000366898.1:c.1364G>A	p.Arg455His	p.R455H	ENST00000366898	NM_004562.2	455	cGc/cAc																																																																														
RAD21	0	MSKCC	GRCh37	8	117878937	117878938	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	90	424	0	ENST00000297338.2:c.31dup	p.Arg11LysfsTer15	p.R11Kfs*15	ENST00000297338	NM_006265.2	11	aga/aAga																																																																														
AGO2	0	MSKCC	GRCh37	8	141557684	141557684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	137	786	0	ENST00000220592.5:c.1631C>T	p.Thr544Met	p.T544M	ENST00000220592	NM_012154.3	544	aCg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	837	745	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	297	556	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7576883	7576883	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	559	684	0	ENST00000269305.4:c.963del	p.Lys321AsnfsTer24	p.K321Nfs*24	ENST00000269305	NM_001126112.2	321	aaA/aa																																																																														
STAG2	0	MSKCC	GRCh37	X	123185169	123185169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	194	524	0	ENST00000218089.9:c.1121G>A	p.Arg374Lys	p.R374K	ENST00000218089	NM_001042749.1	374	aGa/aAa																																																																														
AXL	0	MSKCC	GRCh37	19	41763453	41763453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	509	777	3	ENST00000301178.4:c.2252C>T	p.Pro751Leu	p.P751L	ENST00000301178	NM_021913.4	751	cCg/cTg																																																																														
AR	0	MSKCC	GRCh37	X	66765992	66765992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	95	913	1	ENST00000374690.3:c.1004G>A	p.Ser335Asn	p.S335N	ENST00000374690	NM_000044.3	335	aGc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0019656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	125	895	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578505	7578505	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	601	1213	0	ENST00000269305.4:c.425delC	p.Pro142LeufsTer28	p.P142Lfs*28	ENST00000269305	NM_001126112.2	142	cCt/ct																																																																														
SMAD3	0	MSKCC	GRCh37	15	67479720	67479720	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	164	628	0	ENST00000327367.4:c.1027T>C	p.Phe343Leu	p.F343L	ENST00000327367	NM_005902.3	343	Ttc/Ctc																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	299	1015	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	273	551	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	273	551	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																																																														
XPO1	0	MSKCC	GRCh37	2	61724071	61724071	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	144	905	0	ENST00000401558.2:c.831C>A	p.Ser277Arg	p.S277R	ENST00000401558	NM_003400.3	277	agC/agA																																																																														
XRCC2	0	MSKCC	GRCh37	7	152346058	152346058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	105	843	0	ENST00000359321.1:c.512C>T	p.Ser171Phe	p.S171F	ENST00000359321	NM_005431.1	171	tCt/tTt																																																																														
PREX2	0	MSKCC	GRCh37	8	69005863	69005863	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0019657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	80	783	0	ENST00000288368.4:c.2274T>G	p.Tyr758Ter	p.Y758*	ENST00000288368	NM_024870.2	758	taT/taG																																																																														
XPO1	0	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	88	663	2	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	121	748	4	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	72	682	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	117	656	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CBL	0	MSKCC	GRCh37	11	119149251	119149251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	99	715	0	ENST00000264033.4:c.1259G>A	p.Arg420Gln	p.R420Q	ENST00000264033	NM_005188.3	420	cGa/cAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9547022	9547022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	23	263	0	ENST00000353224.5:c.1000G>A	p.Asp334Asn	p.D334N	ENST00000353224	NM_177990.2	334	Gat/Aat																																																																														
SDHD	0	MSKCC	GRCh37	11	111958593	111958593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	89	669	2	ENST00000375549.3:c.65G>A	p.Arg22Gln	p.R22Q	ENST00000375549	NM_003002.3	22	cGa/cAa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171607	36171607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	51	337	0	ENST00000300305.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000300305		320	Cga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	59	527	0	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	111	926	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692919	89692919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	82	747	0	ENST00000371953.3:c.403A>G	p.Ile135Val	p.I135V	ENST00000371953	NM_000314.4	135	Ata/Gta																																																																														
FANCA	0	MSKCC	GRCh37	16	89815155	89815155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	140	798	2	ENST00000389301.3:c.3260C>T	p.Ser1087Leu	p.S1087L	ENST00000389301	NM_000135.2	1087	tCg/tTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	53	609	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101894916	101894916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	65	475	0	ENST00000374994.4:c.469C>T	p.Arg157Ter	p.R157*	ENST00000374994	NM_004612.2	157	Cga/Tga																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915943	127915943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	99	742	2	ENST00000373547.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000373547	NM_002721.4	180	Gaa/Aaa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41246754	41246754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	85	664	0	ENST00000357654.3:c.794C>A	p.Ser265Tyr	p.S265Y	ENST00000357654	NM_007294.3	265	tCt/tAt																																																																														
CDC73	0	MSKCC	GRCh37	1	193111048	193111048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	48	430	0	ENST00000367435.3:c.581G>T	p.Arg194Ile	p.R194I	ENST00000367435	NM_024529.4	194	aGa/aTa																																																																														
BRAF	0	MSKCC	GRCh37	7	140494187	140494187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	117	1012	1	ENST00000288602.6:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000288602	NM_004333.4	354	cGa/cAa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	55	400	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
XPO1	0	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	84	723	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																																																														
PALB2	0	MSKCC	GRCh37	16	23646884	23646884	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	102	808	1	ENST00000261584.4:c.983C>A	p.Ser328Tyr	p.S328Y	ENST00000261584	NM_024675.3	328	tCt/tAt																																																																														
ATM	0	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	86	678	1	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259357	89259357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	81	590	1	ENST00000336596.2:c.501G>T	p.Glu167Asp	p.E167D	ENST00000336596	NM_005233.5	167	gaG/gaT																																																																														
NF1	0	MSKCC	GRCh37	17	29576111	29576111	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	93	708	1	ENST00000358273.4:c.4084C>T	p.Arg1362Ter	p.R1362*	ENST00000358273	NM_001042492.2	1362	Cga/Tga																																																																														
INHBA	0	MSKCC	GRCh37	7	41729551	41729551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	91	794	0	ENST00000242208.4:c.978C>A	p.Phe326Leu	p.F326L	ENST00000242208	NM_002192.2	326	ttC/ttA																																																																														
NF1	0	MSKCC	GRCh37	17	29592269	29592269	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	44	273	2	ENST00000358273.4:c.4747G>T	p.Glu1583Ter	p.E1583*	ENST00000358273	NM_001042492.2	1583	Gaa/Taa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	81	749	1	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																																																														
POLE	0	MSKCC	GRCh37	12	133249857	133249857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	74	535	0	ENST00000320574.5:c.1366G>C	p.Ala456Pro	p.A456P	ENST00000320574	NM_006231.2	456	Gcc/Ccc																																																																														
ABL1	0	MSKCC	GRCh37	9	133729585	133729585	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	77	781	0	ENST00000318560.5:c.214T>G	p.Phe72Val	p.F72V	ENST00000318560	NM_005157.4	72	Ttt/Gtt																																																																														
RTEL1	0	MSKCC	GRCh37	20	62309650	62309650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	79	620	0	ENST00000508582.2:c.1060G>A	p.Asp354Asn	p.D354N	ENST00000508582		354	Gat/Aat																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138199821	138199821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	81	723	0	ENST00000237289.4:c.1239G>T	p.Lys413Asn	p.K413N	ENST00000237289	NM_001270507.1	413	aaG/aaT																																																																														
XIAP	0	MSKCC	GRCh37	X	123020225	123020225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	79	779	2	ENST00000355640.3:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000355640		238	cGa/cAa																																																																														
RB1	0	MSKCC	GRCh37	13	49039158	49039158	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	37	470	0	ENST00000267163.4:c.2236G>T	p.Glu746Ter	p.E746*	ENST00000267163	NM_000321.2	746	Gaa/Taa																																																																														
GNAS	0	MSKCC	GRCh37	20	57480484	57480484	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11554274		P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	39	421	1	ENST00000371085.3:c.479G>A	p.Arg160His	p.R160H	ENST00000371085	NM_000516.4	160	cGt/cAt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11107047	11107047	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	60	461	0	ENST00000344626.4:c.1752G>T	p.Lys584Asn	p.K584N	ENST00000344626	NM_003072.3	584	aaG/aaT																																																																														
MPL	0	MSKCC	GRCh37	1	43818219	43818219	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	86	674	2	ENST00000372470.3:c.1684G>T	p.Glu562Ter	p.E562*	ENST00000372470	NM_005373.2	562	Gaa/Taa																																																																														
DDR2	0	MSKCC	GRCh37	1	162741930	162741930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	82	531	1	ENST00000367921.3:c.1621C>T	p.Pro541Ser	p.P541S	ENST00000367921	NM_006182.2	541	Cct/Tct																																																																														
FH	0	MSKCC	GRCh37	1	241663891	241663891	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	80	501	0	ENST00000366560.3:c.1237-1G>T		p.X413_splice	ENST00000366560	NM_000143.3	413																																																																															
AKT3	0	MSKCC	GRCh37	1	243716178	243716178	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	64	1021	0	ENST00000263826.5:c.1016T>G	p.Met339Arg	p.M339R	ENST00000263826	NM_005465.4	339	aTg/aGg																																																																														
AKT3	0	MSKCC	GRCh37	1	243800939	243800939	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	63	661	1	ENST00000263826.5:c.535C>A	p.Leu179Met	p.L179M	ENST00000263826	NM_005465.4	179	Ctg/Atg																																																																														
SMYD3	0	MSKCC	GRCh37	1	246091297	246091297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	66	685	1	ENST00000388985.4:c.638C>T	p.Ser213Leu	p.S213L	ENST00000388985		213	tCg/tTg																																																																														
TET1	0	MSKCC	GRCh37	10	70333555	70333555	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	86	639	0	ENST00000373644.4:c.1460C>A	p.Ser487Ter	p.S487*	ENST00000373644	NM_030625.2	487	tCa/tAa																																																																														
ATM	0	MSKCC	GRCh37	11	108119731	108119731	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	46	408	0	ENST00000278616.4:c.1137T>G	p.Asp379Glu	p.D379E	ENST00000278616	NM_000051.3	379	gaT/gaG																																																																														
ATM	0	MSKCC	GRCh37	11	108123597	108123597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	63	632	0	ENST00000278616.4:c.1856A>G	p.Asn619Ser	p.N619S	ENST00000278616	NM_000051.3	619	aAc/aGc																																																																														
CBL	0	MSKCC	GRCh37	11	119170259	119170259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	54	426	1	ENST00000264033.4:c.2489G>T	p.Arg830Ile	p.R830I	ENST00000264033	NM_005188.3	830	aGa/aTa																																																																														
ARID2	0	MSKCC	GRCh37	12	46254700	46254700	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	66	600	2	ENST00000334344.6:c.4890G>T	p.Gln1630His	p.Q1630H	ENST00000334344	NM_152641.2	1630	caG/caT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49428653	49428653	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	77	893	0	ENST00000301067.7:c.10297A>C	p.Lys3433Gln	p.K3433Q	ENST00000301067	NM_003482.3	3433	Aaa/Caa																																																																														
CDK4	0	MSKCC	GRCh37	12	58144796	58144796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	80	696	1	ENST00000257904.6:c.432G>T	p.Glu144Asp	p.E144D	ENST00000257904	NM_000075.3	144	gaG/gaT																																																																														
POLE	0	MSKCC	GRCh37	12	133220022	133220022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	56	691	0	ENST00000320574.5:c.4415C>T	p.Ser1472Phe	p.S1472F	ENST00000320574	NM_006231.2	1472	tCt/tTt																																																																														
POLE	0	MSKCC	GRCh37	12	133245254	133245254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	129	949	3	ENST00000320574.5:c.1993C>T	p.Arg665Trp	p.R665W	ENST00000320574	NM_006231.2	665	Cgg/Tgg																																																																														
CDK8	0	MSKCC	GRCh37	13	26971331	26971331	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	74	598	0	ENST00000381527.3:c.902A>G	p.Lys301Arg	p.K301R	ENST00000381527	NM_001260.1	301	aAa/aGa																																																																														
FLT3	0	MSKCC	GRCh37	13	28622482	28622482	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	73	878	0	ENST00000241453.7:c.1135A>C	p.Ile379Leu	p.I379L	ENST00000241453	NM_004119.2	379	Atc/Ctc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913037	32913037	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	101	911	2	ENST00000380152.3:c.4545G>T	p.Lys1515Asn	p.K1515N	ENST00000380152		1515	aaG/aaT																																																																														
DICER1	0	MSKCC	GRCh37	14	95593018	95593018	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	76	770	1	ENST00000343455.3:c.802G>T	p.Glu268Ter	p.E268*	ENST00000343455	NM_177438.2	268	Gaa/Taa																																																																														
DICER1	0	MSKCC	GRCh37	14	95598897	95598897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	74	651	2	ENST00000343455.3:c.262G>A	p.Asp88Asn	p.D88N	ENST00000343455	NM_177438.2	88	Gac/Aac																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857930	9857930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	102	746	1	ENST00000330684.3:c.3471C>A	p.Asn1157Lys	p.N1157K	ENST00000330684	NM_001134407.1	1157	aaC/aaA																																																																														
ERCC4	0	MSKCC	GRCh37	16	14024666	14024666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	88	605	0	ENST00000311895.7:c.892C>T	p.Leu298Phe	p.L298F	ENST00000311895	NM_005236.2	298	Ctc/Ttc																																																																														
FLCN	0	MSKCC	GRCh37	17	17117004	17117004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	99	676	0	ENST00000285071.4:c.1705G>T	p.Val569Phe	p.V569F	ENST00000285071	NM_144997.5	569	Gtc/Ttc																																																																														
CDK12	0	MSKCC	GRCh37	17	37671991	37671991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	72	685	0	ENST00000447079.4:c.2776C>A	p.Leu926Ile	p.L926I	ENST00000447079	NM_015083.1	926	Ctt/Att																																																																														
KMT2B	0	MSKCC	GRCh37	19	36220895	36220895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	37	254	0	ENST00000222270.7:c.4945G>A	p.Ala1649Thr	p.A1649T	ENST00000222270	NM_014727.1	1649	Gcc/Acc																																																																														
MSH2	0	MSKCC	GRCh37	2	47639587	47639587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	86	626	1	ENST00000233146.2:c.680G>T	p.Arg227Ile	p.R227I	ENST00000233146	NM_000251.2	227	aGa/aTa																																																																														
CASP8	0	MSKCC	GRCh37	2	202149666	202149666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	89	651	0	ENST00000358485.4:c.1107C>A	p.Phe369Leu	p.F369L	ENST00000358485	NM_001080125.1	369	ttC/ttA																																																																														
IDH1	0	MSKCC	GRCh37	2	209106765	209106765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	120	707	0	ENST00000345146.2:c.803C>T	p.Ala268Val	p.A268V	ENST00000345146	NM_005896.2	268	gCc/gTc																																																																														
BARD1	0	MSKCC	GRCh37	2	215657050	215657050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	88	648	1	ENST00000260947.4:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000260947	NM_000465.2	112	cGa/cAa																																																																														
IRS1	0	MSKCC	GRCh37	2	227662932	227662932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	111	943	3	ENST00000305123.5:c.523C>A	p.Gln175Lys	p.Q175K	ENST00000305123	NM_005544.2	175	Cag/Aag																																																																														
U2AF1	0	MSKCC	GRCh37	21	44524475	44524475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	49	459	2	ENST00000291552.4:c.82C>T	p.Arg28Cys	p.R28C	ENST00000291552	NM_006758.2	28	Cgt/Tgt																																																																														
PPARG	0	MSKCC	GRCh37	3	12434118	12434118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	41	539	0	ENST00000287820.6:c.486C>A	p.Phe162Leu	p.F162L	ENST00000287820	NM_015869.4	162	ttC/ttA																																																																														
GSK3B	0	MSKCC	GRCh37	3	119595322	119595322	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	25	470	1	ENST00000316626.5:c.847G>T	p.Glu283Ter	p.E283*	ENST00000316626		283	Gaa/Taa																																																																														
ATR	0	MSKCC	GRCh37	3	142261510	142261510	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	76	562	0	ENST00000350721.4:c.3447A>C	p.Lys1149Asn	p.K1149N	ENST00000350721	NM_001184.3	1149	aaA/aaC																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139882	55139882	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	42	388	0	ENST00000257290.5:c.1543A>G	p.Lys515Glu	p.K515E	ENST00000257290	NM_006206.4	515	Aag/Gag																																																																														
KDR	0	MSKCC	GRCh37	4	55956149	55956149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	79	641	1	ENST00000263923.4:c.3166G>T	p.Asp1056Tyr	p.D1056Y	ENST00000263923	NM_002253.2	1056	Gat/Tat																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361242	66361242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	51	428	0	ENST00000273854.3:c.930C>A	p.Phe310Leu	p.F310L	ENST00000273854	NM_004439.5	310	ttC/ttA																																																																														
FAT1	0	MSKCC	GRCh37	4	187540120	187540120	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	76	586	0	ENST00000441802.2:c.7620T>G	p.Phe2540Leu	p.F2540L	ENST00000441802	NM_005245.3	2540	ttT/ttG																																																																														
FAT1	0	MSKCC	GRCh37	4	187542915	187542915	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	70	377	0	ENST00000441802.2:c.4825T>G	p.Ser1609Ala	p.S1609A	ENST00000441802	NM_005245.3	1609	Tct/Gct																																																																														
FLT4	0	MSKCC	GRCh37	5	180043944	180043944	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	64	857	0	ENST00000261937.6:c.3052A>C	p.Ser1018Arg	p.S1018R	ENST00000261937	NM_182925.4	1018	Agc/Cgc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93969191	93969191	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	39	491	0	ENST00000369303.4:c.1805T>G	p.Phe602Cys	p.F602C	ENST00000369303	NM_004440.3	602	tTt/tGt																																																																														
ROS1	0	MSKCC	GRCh37	6	117609898	117609898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	104	826	0	ENST00000368508.3:c.6801G>T	p.Lys2267Asn	p.K2267N	ENST00000368508	NM_002944.2	2267	aaG/aaT																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137527318	137527318	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	103	809	0	ENST00000367739.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000367739	NM_000416.2	110	Gaa/Taa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508759	106508759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	89	669	0	ENST00000359195.3:c.753G>T	p.Lys251Asn	p.K251N	ENST00000359195	NM_002649.2	251	aaG/aaT																																																																														
MET	0	MSKCC	GRCh37	7	116339324	116339324	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	78	562	0	ENST00000397752.3:c.186T>G	p.Ile62Met	p.I62M	ENST00000397752	NM_000245.2	62	atT/atG																																																																														
NBN	0	MSKCC	GRCh37	8	90960111	90960111	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	49	330	0	ENST00000265433.3:c.1855G>T	p.Glu619Ter	p.E619*	ENST00000265433	NM_002485.4	619	Gaa/Taa																																																																														
NBN	0	MSKCC	GRCh37	8	90965561	90965561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	61	608	0	ENST00000265433.3:c.1756G>A	p.Asp586Asn	p.D586N	ENST00000265433	NM_002485.4	586	Gat/Aat																																																																														
BCOR	0	MSKCC	GRCh37	X	39932000	39932000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	162	827	1	ENST00000378444.4:c.2599G>A	p.Glu867Lys	p.E867K	ENST00000378444	NM_001123385.1	867	Gaa/Aaa																																																																														
AMER1	0	MSKCC	GRCh37	X	63413077	63413077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	152	1054	0	ENST00000330258.3:c.90G>T	p.Lys30Asn	p.K30N	ENST00000330258	NM_152424.3	30	aaG/aaT																																																																														
MED12	0	MSKCC	GRCh37	X	70350059	70350059	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	61	538	1	ENST00000374080.3:c.4042C>A	p.Leu1348Ile	p.L1348I	ENST00000374080		1348	Ctc/Atc																																																																														
MED12	0	MSKCC	GRCh37	X	70352241	70352241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	78	704	0	ENST00000374080.3:c.4268C>A	p.Ser1423Tyr	p.S1423Y	ENST00000374080		1423	tCt/tAt																																																																														
ATRX	0	MSKCC	GRCh37	X	76890120	76890120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	28	784	0	ENST00000373344.5:c.4774C>A	p.Leu1592Ile	p.L1592I	ENST00000373344	NM_000489.3	1592	Ctt/Att																																																																														
ATRX	0	MSKCC	GRCh37	X	76938341	76938341	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	76	756	0	ENST00000373344.5:c.2407A>G	p.Ile803Val	p.I803V	ENST00000373344	NM_000489.3	803	Att/Gtt																																																																														
ATRX	0	MSKCC	GRCh37	X	76938460	76938460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	74	650	1	ENST00000373344.5:c.2288C>T	p.Thr763Ile	p.T763I	ENST00000373344	NM_000489.3	763	aCt/aTt																																																																														
CDC42	0	MSKCC	GRCh37	1	22405002	22405002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019658-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	10	70	0	ENST00000344548.3:c.31G>A	p.Asp11Asn	p.D11N	ENST00000344548	NM_001039802.1	11	Gat/Aat																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	169	892	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0019659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	384	933	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0019659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	892	1113	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916935	178916935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	648	819	0	ENST00000263967.3:c.322C>A	p.Arg108Ser	p.R108S	ENST00000263967	NM_006218.2	108	Cgt/Agt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31468149	31468149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019659-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	63	1024	0	ENST00000344624.3:c.2263G>A	p.Asp755Asn	p.D755N	ENST00000344624		755	Gat/Aat																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	17	343	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	24	663	0	ENST00000371953.3:c.389G>C	p.Arg130Pro	p.R130P	ENST00000371953	NM_000314.4	130	cGa/cCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0019660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	21	845	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0019661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	128	800	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469551	25469551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	36	810	0	ENST00000264709.3:c.1217T>C	p.Met406Thr	p.M406T	ENST00000264709	NM_175629.2	406	aTg/aCg																																																																														
ROS1	0	MSKCC	GRCh37	6	117622216	117622216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	21	683	0	ENST00000368508.3:c.6654C>G	p.Phe2218Leu	p.F2218L	ENST00000368508	NM_002944.2	2218	ttC/ttG																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	22	683	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	602	1041	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CSDE1	0	MSKCC	GRCh37	1	115266570	115266570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	110	967	0	ENST00000438362.2:c.1945C>T	p.Arg649Cys	p.R649C	ENST00000438362	NM_001242891.1	649	Cgc/Tgc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66535421	66535494	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	GCCGCCGGCGTCCCGCACCCCGGGGCCCCGAGCCCCGCATCTTCTCCGAGCCTCCTCCGGTGCCGCTGTCCCGA	GCCGCCGGCGTCCCGCACCCCGGGGCCCCGAGCCCCGCATCTTCTCCGAGCCTCCTCCGGTGCCGCTGTCCCGA	-			P-0019668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	118	399	0	ENST00000273854.3:c.-34_40delTCGGGACAGCGGCACCGGAGGAGGCTCGGAGAAGATGCGGGGCTCGGGGCCCCGGGGTGCGGGACGCCGGCGGC		p.*12fs*	ENST00000273854	NM_004439.5	12																																																																															
EGFR	0	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0019676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	139	429	0	ENST00000275493.2:c.2314_2319dupCCCCAC	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																																																														
YAP1	0	MSKCC	GRCh37	11	101981607	101981607	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	66	302	0	ENST00000282441.5:c.28C>T	p.Gln10Ter	p.Q10*	ENST00000282441	NM_001130145.2	10	Caa/Taa																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	137	780	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100829	27100829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	234	570	1	ENST00000324856.7:c.4111C>T	p.Arg1371Trp	p.R1371W	ENST00000324856	NM_006015.4	1371	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	58	739	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	217	558	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932020	36932020	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	71	754	0	ENST00000361632.4:c.2449C>G	p.Leu817Val	p.L817V	ENST00000361632		817	Ctc/Gtc																																																																														
PALB2	0	MSKCC	GRCh37	16	23641768	23641768	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	91	571	1	ENST00000261584.4:c.1707del	p.Glu570ArgfsTer29	p.E570Rfs*29	ENST00000261584	NM_024675.3	569	aaA/aa																																																																														
FAT1	0	MSKCC	GRCh37	4	187627932	187627932	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs187106653		P-0019678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	169	807	0	ENST00000441802.2:c.3050A>G	p.Tyr1017Cys	p.Y1017C	ENST00000441802	NM_005245.3	1017	tAt/tGt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144049	11144051	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0019680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	381	1062	2	ENST00000344626.4:c.3634_3636del	p.Glu1212del	p.E1212del	ENST00000344626	NM_003072.3	1210	gtGGAg/gtg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094440	27094440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	233	662	1	ENST00000324856.7:c.3148G>A	p.Asp1050Asn	p.D1050N	ENST00000324856	NM_006015.4	1050	Gac/Aac																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482870	67482870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	151	459	0	ENST00000327367.4:c.1274C>G	p.Ser425Cys	p.S425C	ENST00000327367	NM_005902.3	425	tCt/tGt																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39607435	39607435	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	198	543	0	ENST00000262039.4:c.1513G>C	p.Asp505His	p.D505H	ENST00000262039	NM_002647.2	505	Gat/Cat																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332708	153332708	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138203389		P-0019680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	81	539	0	ENST00000281708.4:c.248G>A	p.Arg83Lys	p.R83K	ENST00000281708	NM_033632.3	83	aGa/aAa																																																																														
PAX5	0	MSKCC	GRCh37	9	37015177	37015177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	414	680	0	ENST00000358127.4:c.227G>A	p.Gly76Glu	p.G76E	ENST00000358127	NM_001280556.1	76	gGa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	99	680	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	27	512	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	38	499	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	127	680	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	127	680	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	127	680	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac																																																																														
RBM10	0	MSKCC	GRCh37	X	47045514	47045514	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	58	407	1	ENST00000329236.7:c.2250del	p.Glu751SerfsTer18	p.E751Sfs*18	ENST00000329236	NM_001204466.1	749	atC/at																																																																														
RNF43	0	MSKCC	GRCh37	17	56492882	56492908	+	inframe_deletion	In_Frame_Del	DEL	AGCCATCAGCAGCCAGGGCCAGAGGGC	AGCCATCAGCAGCCAGGGCCAGAGGGC	-			P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	52	359	0	ENST00000407977.2:c.31_57del	p.Ala11_Ala19del	p.A11_A19del	ENST00000407977		11	GCCCTCTGGCCCTGGCTGCTGATGGCT/-																																																																														
ATR	0	MSKCC	GRCh37	3	142268400	142268400	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	42	696	1	ENST00000350721.4:c.3092A>G	p.Asn1031Ser	p.N1031S	ENST00000350721	NM_001184.3	1031	aAc/aGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0019684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	87	726	2	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
STK11	0	MSKCC	GRCh37	19	1220698	1220698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	120	875	0	ENST00000326873.7:c.716G>C	p.Trp239Ser	p.W239S	ENST00000326873	NM_000455.4	239	tGg/tCg																																																																														
TET1	0	MSKCC	GRCh37	10	70405382	70405382	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	105	954	0	ENST00000373644.4:c.2896A>T	p.Asn966Tyr	p.N966Y	ENST00000373644	NM_030625.2	966	Aac/Tac																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43749219	43749219	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	65	1017	0	ENST00000382044.4:c.1587G>T	p.Gln529His	p.Q529H	ENST00000382044	NM_001141980.1	529	caG/caT																																																																														
PTPRS	0	MSKCC	GRCh37	19	5245808	5245808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	110	955	1	ENST00000357368.4:c.967G>A	p.Val323Ile	p.V323I	ENST00000357368	NM_002850.3	323	Gtt/Att																																																																														
GSK3B	0	MSKCC	GRCh37	3	119642254	119642254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	39	732	1	ENST00000316626.5:c.443G>T	p.Arg148Leu	p.R148L	ENST00000316626		148	cGa/cTa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134959989	134959989	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0019684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	40	427	0	ENST00000398015.3:c.2347-1G>A		p.X783_splice	ENST00000398015	NM_004441.4	783																																																																															
FAT1	0	MSKCC	GRCh37	4	187534397	187534397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	60	637	0	ENST00000441802.2:c.9329G>T	p.Ser3110Ile	p.S3110I	ENST00000441802	NM_005245.3	3110	aGt/aTt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508622	106508622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	41	499	0	ENST00000359195.3:c.616C>A	p.Pro206Thr	p.P206T	ENST00000359195	NM_002649.2	206	Ccc/Acc																																																																														
SMO	0	MSKCC	GRCh37	7	128829161	128829161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	38	196	0	ENST00000249373.3:c.169C>A	p.Pro57Thr	p.P57T	ENST00000249373	NM_005631.4	57	Cct/Act																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986871	36986883	+	protein_altering_variant	In_Frame_Del	DEL	CCGGTGCCCCCGC	CCGGTGCCCCCGC	G			P-0019684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	212	457	0	ENST00000354822.5:c.806_818delinsC	p.Gly269_Gly273delinsAla	p.G269_G273delinsA	ENST00000354822	NM_001079668.2	269	gGCGGGGGCACCGGg/gCg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	194	705	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175182	112175182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	166	292	0	ENST00000257430.4:c.3892del	p.Ser1298LeufsTer7	p.S1298Lfs*7	ENST00000257430	NM_000038.5	1297	gaT/ga																																																																														
ALK	0	MSKCC	GRCh37	2	30142901	30142901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	202	989	0	ENST00000389048.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000389048	NM_004304.4	209	Cgc/Tgc																																																																														
CARD11	0	MSKCC	GRCh37	7	2946453	2946453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	162	720	2	ENST00000396946.4:c.3284C>T	p.Thr1095Met	p.T1095M	ENST00000396946	NM_032415.4	1095	aCg/aTg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508398	106508398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	48	212	1	ENST00000359195.3:c.392G>T	p.Ser131Ile	p.S131I	ENST00000359195	NM_002649.2	131	aGc/aTc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398278	25398282	+	missense_variant	Missense_Mutation	ONP	ACGCC	ACGCC	CCGCA			P-0019685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	183	718	0	ENST00000256078.4:c.37_41delinsTGCGG	p.Gly13_Val14delinsCysGly	p.G13_V14delinsCG	ENST00000256078	NM_033360.2	13	GGCGTa/TGCGGa																																																																														
SESN2	0	MSKCC	GRCh37	1	28599122	28599122	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	99	1066	0	ENST00000253063.3:c.568T>C	p.Ser190Pro	p.S190P	ENST00000253063	NM_031459.4	190	Tcc/Ccc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	245	760	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031919	26031919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	65	409	0	ENST00000244661.2:c.370G>C	p.Asp124His	p.D124H	ENST00000244661	NM_003537.3	124	Gac/Cac																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	49	1189	2	ENST00000250448.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000250448	NM_004496.3	219	Cgc/Tgc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37872045	37872045	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200497646		P-0019695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	55	1259	0	ENST00000269571.5:c.1366C>T	p.Arg456Cys	p.R456C	ENST00000269571		456	Cgc/Tgc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	244	697	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	408	781	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0019696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	542	681	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
STK40	0	MSKCC	GRCh37	1	36820012	36820013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	134	723	0	ENST00000373129.3:c.575dup	p.Asn192LysfsTer65	p.N192Kfs*65	ENST00000373129	NM_032017.1	192	aat/aaAt																																																																														
MSI1	0	MSKCC	GRCh37	12	120791129	120791129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	173	952	0	ENST00000257552.2:c.706G>A	p.Ala236Thr	p.A236T	ENST00000257552	NM_002442.3	236	Gcc/Acc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	692	723	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	139	776	0				ENST00000310581	NM_198253.2																																																																																
IL7R	0	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	114	460	1	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
NF1	0	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	379	440	1	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
PIM1	0	MSKCC	GRCh37	6	37138362	37138362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	493	1014	3	ENST00000373509.5:c.11C>T	p.Ser4Phe	p.S4F	ENST00000373509	NM_002648.3	4	tCc/tTc																																																																														
FGF3	0	MSKCC	GRCh37	11	69625110	69625110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	398	926	0	ENST00000334134.2:c.683C>T	p.Ser228Leu	p.S228L	ENST00000334134	NM_005247.2	228	tCg/tTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118355576	118355576	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	123	609	0	ENST00000534358.1:c.4219-1G>A		p.X1407_splice	ENST00000534358	NM_005933.3	1407																																																																															
PIK3C2G	0	MSKCC	GRCh37	12	18762516	18762516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	258	755	0	ENST00000266497.5:c.4012T>C	p.Tyr1338His	p.Y1338H	ENST00000266497		1338	Tac/Cac																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857851	9857851	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	188	669	0	ENST00000330684.3:c.3550T>C	p.Tyr1184His	p.Y1184H	ENST00000330684	NM_001134407.1	1184	Tat/Cat																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11101847	11101847	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	258	1049	1	ENST00000344626.4:c.1267T>G	p.Cys423Gly	p.C423G	ENST00000344626	NM_003072.3	423	Tgc/Ggc																																																																														
SOS1	0	MSKCC	GRCh37	2	39214627	39214627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	366	788	0	ENST00000402219.2:c.3497C>A	p.Ser1166Tyr	p.S1166Y	ENST00000402219	NM_005633.3	1166	tCt/tAt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1807646	1807646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	467	1124	1	ENST00000260795.2:c.1815G>A	p.Met605Ile	p.M605I	ENST00000260795		605	atG/atA																																																																														
NSD1	0	MSKCC	GRCh37	5	176636916	176636916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	224	769	0	ENST00000439151.2:c.1516C>T	p.Pro506Ser	p.P506S	ENST00000439151	NM_022455.4	506	Cca/Tca																																																																														
ROS1	0	MSKCC	GRCh37	6	117710789	117710789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	151	478	0	ENST00000368508.3:c.1483C>T	p.Pro495Ser	p.P495S	ENST00000368508	NM_002944.2	495	Ccc/Tcc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50459478	50459478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	125	538	0	ENST00000331340.3:c.767T>C	p.Ile256Thr	p.I256T	ENST00000331340	NM_006060.4	256	aTa/aCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	168	810	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	19	1015	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88483916	88483916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	66	920	1	ENST00000360948.2:c.1654G>T	p.Val552Phe	p.V552F	ENST00000360948	NM_001012338.2	552	Gtc/Ttc																																																																														
PGR	0	MSKCC	GRCh37	11	100998684	100998685	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	121	1339	1	ENST00000325455.5:c.1117_1118delinsAA	p.Ala373Lys	p.A373K	ENST00000325455	NM_001202474.3	373	GCg/AAg																																																																														
ATM	0	MSKCC	GRCh37	11	108186743	108186743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	66	697	0	ENST00000278616.4:c.6101G>C	p.Arg2034Pro	p.R2034P	ENST00000278616	NM_000051.3	2034	cGa/cCa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32900750	32900750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	90	601	0	ENST00000380152.3:c.631G>T	p.Val211Phe	p.V211F	ENST00000380152		211	Gtc/Ttc																																																																														
MGA	0	MSKCC	GRCh37	15	41988957	41988957	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	116	878	0	ENST00000219905.7:c.1751del	p.Gly584AlafsTer16	p.G584Afs*16	ENST00000219905	NM_001164273.1	583	ttG/tt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554705	63554705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	83	527	0	ENST00000307078.5:c.34G>T	p.Asp12Tyr	p.D12Y	ENST00000307078	NM_004655.3	12	Gac/Tac																																																																														
POLD1	0	MSKCC	GRCh37	19	50905055	50905055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	56	729	2	ENST00000440232.2:c.337G>T	p.Gly113Trp	p.G113W	ENST00000440232	NM_002691.3	113	Ggg/Tgg																																																																														
IRS1	0	MSKCC	GRCh37	2	227662617	227662617	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	35	628	0	ENST00000305123.5:c.838A>G	p.Ile280Val	p.I280V	ENST00000305123	NM_005544.2	280	Atc/Gtc																																																																														
SRC	0	MSKCC	GRCh37	20	36012603	36012603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	30	762	0	ENST00000358208.4:c.47G>T	p.Arg16Leu	p.R16L	ENST00000358208		16	cGc/cTc																																																																														
KIT	0	MSKCC	GRCh37	4	55589831	55589831	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	88	608	0	ENST00000288135.5:c.1313T>G	p.Ile438Arg	p.I438R	ENST00000288135	NM_000222.2	438	aTa/aGa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361262	66361262	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	27	346	0	ENST00000273854.3:c.911-1G>A		p.X304_splice	ENST00000273854	NM_004439.5	304																																																																															
INPP4B	0	MSKCC	GRCh37	4	143181675	143181675	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	104	860	0	ENST00000262992.4:c.658G>C	p.Gly220Arg	p.G220R	ENST00000262992	NM_001101669.1	220	Gga/Cga																																																																														
FAT1	0	MSKCC	GRCh37	4	187629556	187629556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	116	826	0	ENST00000441802.2:c.1426G>T	p.Val476Leu	p.V476L	ENST00000441802	NM_005245.3	476	Gtg/Ttg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98218640	98218640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	93	661	0	ENST00000331920.6:c.3224G>T	p.Gly1075Val	p.G1075V	ENST00000331920	NM_000264.3	1075	gGa/gTa																																																																														
ATRX	0	MSKCC	GRCh37	X	76855028	76855028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	63	744	1	ENST00000373344.5:c.5808G>T	p.Lys1936Asn	p.K1936N	ENST00000373344	NM_000489.3	1936	aaG/aaT																																																																														
ATRX	0	MSKCC	GRCh37	X	76938796	76938796	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	89	887	0	ENST00000373344.5:c.1952C>G	p.Ser651Cys	p.S651C	ENST00000373344	NM_000489.3	651	tCt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	24	761	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	28	405	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	0	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	27	562	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	24	534	1	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
B2M	0	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	T			P-0019710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	18	469	0	ENST00000558401.1:c.1A>T	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Ttg																																																																														
U2AF1	0	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	33	485	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																														
CARD11	0	MSKCC	GRCh37	7	2977584	2977584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	76	785	2	ENST00000396946.4:c.1100C>T	p.Thr367Met	p.T367M	ENST00000396946	NM_032415.4	367	aCg/aTg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52696293	52696293	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	50	490	0	ENST00000394830.3:c.385-1G>A		p.X129_splice	ENST00000394830	NM_018313.4	129																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	128	662	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	144	534	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487153	56487153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	182	592	0	ENST00000267101.3:c.1299G>A	p.Met433Ile	p.M433I	ENST00000267101	NM_001982.3	433	atG/atA																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851304	156851304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	326	840	2	ENST00000524377.1:c.2261C>T	p.Pro754Leu	p.P754L	ENST00000524377	NM_002529.3	754	cCa/cTa																																																																														
ATM	0	MSKCC	GRCh37	11	108160450	108160451	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	209	644	0	ENST00000278616.4:c.4363dup	p.Ser1455LysfsTer36	p.S1455Kfs*36	ENST00000278616	NM_000051.3	1453	ata/atAa																																																																														
KDM5A	0	MSKCC	GRCh37	12	472218	472218	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	68	538	0	ENST00000399788.2:c.583G>C	p.Glu195Gln	p.E195Q	ENST00000399788	NM_001042603.1	195	Gag/Cag																																																																														
EPHB1	0	MSKCC	GRCh37	3	134880937	134880937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	272	659	0	ENST00000398015.3:c.1500G>A	p.Met500Ile	p.M500I	ENST00000398015	NM_004441.4	500	atG/atA																																																																														
NTRK2	0	MSKCC	GRCh37	9	87570426	87570426	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019712-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	321	904	0	ENST00000277120.3:c.2166C>A	p.Tyr722Ter	p.Y722*	ENST00000277120		722	taC/taA																																																																														
DOT1L	0	MSKCC	GRCh37	19	2202742	2202742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	585	840	0	ENST00000398665.3:c.751C>T	p.His251Tyr	p.H251Y	ENST00000398665	NM_032482.2	251	Cac/Tac																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127446	55127446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	89	893	0	ENST00000257290.5:c.234C>A	p.Ser78Arg	p.S78R	ENST00000257290	NM_006206.4	78	agC/agA																																																																														
RRAGC	0	MSKCC	GRCh37	1	39325172	39325173	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCTGCC			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1871	429	1095	1	ENST00000373001.3:c.141_146dup	p.Ala48_Gly49dup	p.A48_G49dup	ENST00000373001	NM_022157.3	48	ggc/ggGGCAGGc																																																																														
FGF19	0	MSKCC	GRCh37	11	69514178	69514178	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	168	819	0	ENST00000294312.3:c.503T>A	p.Met168Lys	p.M168K	ENST00000294312	NM_005117.2	168	aTg/aAg																																																																														
DIS3	0	MSKCC	GRCh37	13	73355083	73355083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	132	684	0	ENST00000377767.4:c.287A>G	p.Gln96Arg	p.Q96R	ENST00000377767	NM_014953.3	96	cAa/cGa																																																																														
AKT2	0	MSKCC	GRCh37	19	40742005	40742005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	261	905	0	ENST00000392038.2:c.967G>C	p.Glu323Gln	p.E323Q	ENST00000392038	NM_001626.4	323	Gag/Cag																																																																														
SOS1	0	MSKCC	GRCh37	2	39281889	39281889	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	96	693	0	ENST00000402219.2:c.586T>A	p.Ser196Thr	p.S196T	ENST00000402219	NM_005633.3	196	Tca/Aca																																																																														
EP300	0	MSKCC	GRCh37	22	41547924	41547924	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	86	763	0	ENST00000263253.7:c.2905G>T	p.Glu969Ter	p.E969*	ENST00000263253	NM_001429.3	969	Gag/Tag																																																																														
EP300	0	MSKCC	GRCh37	22	41547954	41547954	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	94	823	0	ENST00000263253.7:c.2935G>C	p.Glu979Gln	p.E979Q	ENST00000263253	NM_001429.3	979	Gag/Cag																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185169125	185169125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	123	674	0	ENST00000265026.3:c.1220T>C	p.Leu407Ser	p.L407S	ENST00000265026	NM_004721.4	407	tTa/tCa																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526719	31526719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2274	192	1197	0	ENST00000344624.3:c.321G>A	p.Met107Ile	p.M107I	ENST00000344624		107	atG/atA																																																																														
RXRA	0	MSKCC	GRCh37	9	137313613	137313613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	570	1051	0	ENST00000481739.1:c.872A>G	p.Glu291Gly	p.E291G	ENST00000481739	NM_002957.4	291	gAg/gGg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53239595	53239595	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	113	288	0	ENST00000375401.3:c.1746+1G>T		p.X582_splice	ENST00000375401	NM_004187.3	582																																																																															
FAM58A	92002	MSKCC	GRCh37	X	152864444	152864759	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	CTCGGAAGTGCACCCTGGCTTCGGGCGCCGGCTGCCCTCCGGGCCCCGCGCTGCAGGCCCCCCTCCGCCGCCTCCGGGGCTTCCATGAGGCGCCGCGGCACCGGCGGAAGGAGAGGCGGCCCCGGCGCGCAGAAGCCGGCAGAACTGGAGGTGCTCGCGGCGGGCGTGCCGCCCCACCCGGCCGCGTCCGGCCCCGCCCCGCCCCGCCCCTCGCCGCCCCGCCCCGCCCCTCGCCGCCCCGCCCCGCCCCTCGCCGCCCCGCCGCTCCTCCGCCCCGCCCCGCCCCTCAGGGCCCTCGCCCAAGGGTGAGCGCGCG	CTCGGAAGTGCACCCTGGCTTCGGGCGCCGGCTGCCCTCCGGGCCCCGCGCTGCAGGCCCCCCTCCGCCGCCTCCGGGGCTTCCATGAGGCGCCGCGGCACCGGCGGAAGGAGAGGCGGCCCCGGCGCGCAGAAGCCGGCAGAACTGGAGGTGCTCGCGGCGGGCGTGCCGCCCCACCCGGCCGCGTCCGGCCCCGCCCCGCCCCGCCCCTCGCCGCCCCGCCCCGCCCCTCGCCGCCCCGCCCCGCCCCTCGCCGCCCCGCCGCTCCTCCGCCCCGCCCCGCCCCTCAGGGCCCTCGCCCAAGGGTGAGCGCGCG	-			P-0019713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	100	68	0				ENST00000406277	NM_152274.4			1-3/7																																																																													
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	151	756	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151849798	151849888	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGGAGGAAATGGTACATTAGGCTGCTTCAGCCGGTAAGAGCTCACTAATCTGGGAGGGTTTGCAGATCCTGGCGGAGGCCCACGGAGAA	GTTGGAGGAAATGGTACATTAGGCTGCTTCAGCCGGTAAGAGCTCACTAATCTGGGAGGGTTTGCAGATCCTGGCGGAGGCCCACGGAGAA	-			P-0019716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	26	315	0	ENST00000262189.6:c.12428_12518del	p.Leu4143GlnfsTer45	p.L4143Qfs*45	ENST00000262189	NM_170606.2	4143	cTTCTCCGTGGGCCTCCGCCAGGATCTGCAAACCCTCCCAGATTAGTGAGCTCTTACCGGCTGAAGCAGCCTAATGTACCATTTCCTCCAACa/ca																																																																														
NF1	0	MSKCC	GRCh37	17	29528489	29528489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	230	692	0	ENST00000358273.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000358273	NM_001042492.2	416	Cga/Tga																																																																														
BRAF	0	MSKCC	GRCh37	7	140477807	140477807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	240	652	1	ENST00000288602.6:c.1501G>A	p.Glu501Lys	p.E501K	ENST00000288602	NM_004333.4	501	Gaa/Aaa																																																																														
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	187	634	1				ENST00000310581	NM_198253.2																																																																																
STAT5B	0	MSKCC	GRCh37	17	40369273	40369273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	282	655	0	ENST00000293328.3:c.1285C>T	p.Arg429Cys	p.R429C	ENST00000293328	NM_012448.3	429	Cgt/Tgt																																																																														
AMER1	0	MSKCC	GRCh37	X	63411267	63411267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	302	397	2	ENST00000330258.3:c.1900C>T	p.Arg634Cys	p.R634C	ENST00000330258	NM_152424.3	634	Cgt/Tgt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81969779	81969779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	198	506	0	ENST00000359376.3:c.2848C>T	p.Pro950Ser	p.P950S	ENST00000359376	NM_002661.3	950	Cct/Tct																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740479	58740479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	251	705	3	ENST00000305921.3:c.1384C>T	p.Gln462Ter	p.Q462*	ENST00000305921	NM_003620.3	462	Caa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105682	27105682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	128	356	0	ENST00000324856.7:c.5293G>A	p.Glu1765Lys	p.E1765K	ENST00000324856	NM_006015.4	1765	Gaa/Aaa																																																																														
STK40	0	MSKCC	GRCh37	1	36820866	36820866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	229	651	1	ENST00000373129.3:c.511G>A	p.Glu171Lys	p.E171K	ENST00000373129	NM_032017.1	171	Gag/Aag																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612807	228612807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	200	597	1	ENST00000366696.1:c.220G>A	p.Glu74Lys	p.E74K	ENST00000366696	NM_003493.2	74	Gag/Aag																																																																														
RET	0	MSKCC	GRCh37	10	43609119	43609120	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	303	1027	2	ENST00000355710.3:c.1875_1876delinsTT	p.Gln626Ter	p.Q626*	ENST00000355710	NM_020975.4	625	atCCag/atTTag																																																																														
ATM	0	MSKCC	GRCh37	11	108181018	108181018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	176	431	0	ENST00000278616.4:c.5894A>G	p.Lys1965Arg	p.K1965R	ENST00000278616	NM_000051.3	1965	aAa/aGa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344368	118344368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	118	252	0	ENST00000534358.1:c.2494C>T	p.Pro832Ser	p.P832S	ENST00000534358	NM_005933.3	832	Cct/Tct																																																																														
ARID2	0	MSKCC	GRCh37	12	46243915	46243915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	229	446	1	ENST00000334344.6:c.2009C>T	p.Pro670Leu	p.P670L	ENST00000334344	NM_152641.2	670	cCt/cTt																																																																														
CDK8	0	MSKCC	GRCh37	13	26828872	26828872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	184	553	0	ENST00000381527.3:c.94T>C	p.Tyr32His	p.Y32H	ENST00000381527	NM_001260.1	32	Tat/Cat																																																																														
FLT3	0	MSKCC	GRCh37	13	28578233	28578233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	266	704	0	ENST00000241453.7:c.2938G>A	p.Asp980Asn	p.D980N	ENST00000241453	NM_004119.2	980	Gat/Aat																																																																														
TRAF7	0	MSKCC	GRCh37	16	2225848	2225848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	288	710	1	ENST00000326181.6:c.1640G>T	p.Arg547Leu	p.R547L	ENST00000326181	NM_032271.2	547	cGa/cTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862815	9862815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	239	726	0	ENST00000330684.3:c.2488C>T	p.Leu830Phe	p.L830F	ENST00000330684	NM_001134407.1	830	Ctt/Ttt																																																																														
PALB2	0	MSKCC	GRCh37	16	23641356	23641356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	280	937	1	ENST00000261584.4:c.2119C>T	p.Pro707Ser	p.P707S	ENST00000261584	NM_024675.3	707	Cct/Tct																																																																														
NF1	0	MSKCC	GRCh37	17	29490300	29490300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	247	546	1	ENST00000358273.4:c.385C>T	p.Gln129Ter	p.Q129*	ENST00000358273	NM_001042492.2	129	Cag/Tag																																																																														
SUZ12	0	MSKCC	GRCh37	17	30321614	30321614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	196	619	0	ENST00000322652.5:c.1469C>T	p.Ser490Phe	p.S490F	ENST00000322652	NM_015355.2	490	tCt/tTt																																																																														
EZH1	0	MSKCC	GRCh37	17	40858042	40858042	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	258	707	0	ENST00000428826.2:c.1822C>T	p.Gln608Ter	p.Q608*	ENST00000428826		608	Cag/Tag																																																																														
BRIP1	0	MSKCC	GRCh37	17	59934445	59934446	+	missense_variant	Missense_Mutation	DNP	CT	CT	TC			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	195	497	1	ENST00000259008.2:c.352_353delinsGA	p.Arg118Glu	p.R118E	ENST00000259008	NM_032043.2	118	AGa/GAa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15295785	15295785	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	416	1140	0	ENST00000263388.2:c.2342A>C	p.Glu781Ala	p.E781A	ENST00000263388	NM_000435.2	781	gAg/gCg																																																																														
CD79A	0	MSKCC	GRCh37	19	42383620	42383620	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201206281		P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	201	540	1	ENST00000221972.3:c.395C>T	p.Pro132Leu	p.P132L	ENST00000221972	NM_021601.3	132	cCc/cTc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52719111	52719111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	254	640	1	ENST00000322088.6:c.887C>T	p.Ala296Val	p.A296V	ENST00000322088	NM_014225.5	296	gCc/gTc																																																																														
EPCAM	0	MSKCC	GRCh37	2	47606158	47606158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	219	557	0	ENST00000263735.4:c.622G>A	p.Asp208Asn	p.D208N	ENST00000263735	NM_002354.2	208	Gac/Aac																																																																														
PAK7	0	MSKCC	GRCh37	20	9561016	9561016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	152	387	0	ENST00000353224.5:c.766G>A	p.Glu256Lys	p.E256K	ENST00000353224	NM_177990.2	256	Gaa/Aaa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266131	41266157	+	inframe_deletion	In_Frame_Del	DEL	CTCCTTCTCTGAGTGGTAAAGGCAATC	CTCCTTCTCTGAGTGGTAAAGGCAATC	-			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	267	311	0	ENST00000349496.5:c.130_156del	p.Pro44_Pro52del	p.P44_P52del	ENST00000349496	NM_001904.3	43	gCTCCTTCTCTGAGTGGTAAAGGCAATCct/gct																																																																														
SETD2	0	MSKCC	GRCh37	3	47127776	47127776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	206	441	0	ENST00000409792.3:c.5306C>T	p.Ser1769Phe	p.S1769F	ENST00000409792	NM_014159.6	1769	tCc/tTc																																																																														
SETD2	0	MSKCC	GRCh37	3	47164174	47164177	+	frameshift_variant	Frame_Shift_Del	DEL	TCCT	TCCT	CCC			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	184	399	1	ENST00000409792.3:c.1949_1952delinsGGG	p.Lys650ArgfsTer3	p.K650Rfs*3	ENST00000409792	NM_014159.6	650	aAGGAa/aGGGa																																																																														
GATA2	0	MSKCC	GRCh37	3	128204863	128204863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	358	1015	1	ENST00000341105.2:c.578C>T	p.Pro193Leu	p.P193L	ENST00000341105	NM_032638.4	193	cCa/cTa																																																																														
FAT1	0	MSKCC	GRCh37	4	187628425	187628425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	355	805	1	ENST00000441802.2:c.2557C>T	p.Pro853Ser	p.P853S	ENST00000441802	NM_005245.3	853	Ccc/Tcc																																																																														
APC	0	MSKCC	GRCh37	5	112173366	112173366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	143	424	0	ENST00000257430.4:c.2075C>T	p.Pro692Leu	p.P692L	ENST00000257430	NM_000038.5	692	cCt/cTt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522621	176522621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	292	923	1	ENST00000292408.4:c.1718G>A	p.Ser573Asn	p.S573N	ENST00000292408	NM_213647.1	573	aGc/aAc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93955149	93955149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	204	641	0	ENST00000369303.4:c.2749C>T	p.Gln917Ter	p.Q917*	ENST00000369303	NM_004440.3	917	Caa/Taa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509446	106509446	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	206	630	0	ENST00000359195.3:c.1440C>G	p.Tyr480Ter	p.Y480*	ENST00000359195	NM_002649.2	480	taC/taG																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509642	106509642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	239	570	2	ENST00000359195.3:c.1636G>A	p.Glu546Lys	p.E546K	ENST00000359195	NM_002649.2	546	Gaa/Aaa																																																																														
PREX2	0	MSKCC	GRCh37	8	68939497	68939497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	195	647	1	ENST00000288368.4:c.482C>T	p.Pro161Leu	p.P161L	ENST00000288368	NM_024870.2	161	cCc/cTc																																																																														
PREX2	0	MSKCC	GRCh37	8	68993027	68993027	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	456	632	0	ENST00000288368.4:c.1832A>T	p.Asn611Ile	p.N611I	ENST00000288368	NM_024870.2	611	aAt/aTt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409399	80409399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	246	625	0	ENST00000286548.4:c.715C>T	p.Leu239Phe	p.L239F	ENST00000286548	NM_002072.3	239	Ctc/Ttc																																																																														
RAC1	0	MSKCC	GRCh37	7	6442036	6442040	+	missense_variant	Missense_Mutation	ONP	CCTCC	CCTCC	GCTCT			P-0019720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	41	52	0	ENST00000356142.4:c.595_599delinsGCTCT	p.Pro199_Pro200delinsAlaLeu	p.P199_P200delinsAL	ENST00000356142	NM_018890.3	199	CCTCCc/GCTCTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	117	612	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9984844	9984844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0019724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	59	453	0	ENST00000330684.3:c.1121A>T	p.Lys374Met	p.K374M	ENST00000330684	NM_001134407.1	374	aAg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0019724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	74	451	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
ARID2	0	MSKCC	GRCh37	12	46244255	46244255	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	57	345	0	ENST00000334344.6:c.2351del	p.Pro784LeufsTer8	p.P784Lfs*8	ENST00000334344	NM_152641.2	783	atC/at																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424512	49424512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	115	755	3	ENST00000301067.7:c.13711G>A	p.Ala4571Thr	p.A4571T	ENST00000301067	NM_003482.3	4571	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	247	800	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0019726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	116	453	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0019726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	116	453	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0019726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	113	503	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845465	151845465	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0019726-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	169	682	0	ENST00000262189.6:c.13547T>G	p.Leu4516Ter	p.L4516*	ENST00000262189	NM_170606.2	4516	tTa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	583	1097	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956565	93956565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	118	445	0	ENST00000369303.4:c.2671G>C	p.Asp891His	p.D891H	ENST00000369303	NM_004440.3	891	Gac/Cac																																																																														
FH	0	MSKCC	GRCh37	1	241676991	241676991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	152	685	0	ENST00000366560.3:c.290G>T	p.Gly97Val	p.G97V	ENST00000366560	NM_000143.3	97	gGc/gTc																																																																														
IRS2	0	MSKCC	GRCh37	13	110436369	110436369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	674	896	1	ENST00000375856.3:c.2032A>G	p.Met678Val	p.M678V	ENST00000375856	NM_003749.2	678	Atg/Gtg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88799175	88799175	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	665	1120	0	ENST00000360948.2:c.210T>A	p.Ser70Arg	p.S70R	ENST00000360948	NM_001012338.2	70	agT/agA																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934623	9934623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	422	549	0	ENST00000330684.3:c.1532C>G	p.Ser511Trp	p.S511W	ENST00000330684	NM_001134407.1	511	tCg/tGg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348135	89348135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	239	868	0	ENST00000301030.4:c.4815G>A	p.Met1605Ile	p.M1605I	ENST00000301030	NM_001256183.1	1605	atG/atA																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350087	89350087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	225	803	0	ENST00000301030.4:c.2863C>G	p.Leu955Val	p.L955V	ENST00000301030	NM_001256183.1	955	Ctg/Gtg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980733	40980747	+	inframe_deletion	In_Frame_Del	DEL	TGGTGGCAATCCGAG	TGGTGGCAATCCGAG	-			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	116	496	0	ENST00000373198.4:c.1739_1753del	p.Thr580_Thr584del	p.T580_T584del	ENST00000373198	NM_133170.3	580	aCTCGGATTGCCACCAaa/aaa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980813	40980813	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	207	779	0	ENST00000373198.4:c.1673del	p.Pro558GlnfsTer43	p.P558Qfs*43	ENST00000373198	NM_133170.3	558	cCa/ca																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164866	36164866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	606	1092	1	ENST00000300305.3:c.1009C>T	p.Pro337Ser	p.P337S	ENST00000300305		337	Ccc/Tcc																																																																														
IRF4	0	MSKCC	GRCh37	6	405093	405093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	363	736	0	ENST00000380956.4:c.1175C>A	p.Pro392Gln	p.P392Q	ENST00000380956	NM_001195286.1	392	cCa/cAa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450283	50450283	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	294	637	0	ENST00000331340.3:c.467A>C	p.Gln156Pro	p.Q156P	ENST00000331340	NM_006060.4	156	cAg/cCg																																																																														
XRCC2	0	MSKCC	GRCh37	7	152346138	152346138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	351	831	0	ENST00000359321.1:c.432C>G	p.Cys144Trp	p.C144W	ENST00000359321	NM_005431.1	144	tgC/tgG																																																																														
PREX2	0	MSKCC	GRCh37	8	69046404	69046404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	408	847	1	ENST00000288368.4:c.3877A>T	p.Ser1293Cys	p.S1293C	ENST00000288368	NM_024870.2	1293	Agc/Tgc																																																																														
DDR2	0	MSKCC	GRCh37	1	162745581	162745581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	95	523	0	ENST00000367921.3:c.1996C>A	p.Leu666Ile	p.L666I	ENST00000367921	NM_006182.2	666	Ctt/Att																																																																														
TP53	0	MSKCC	GRCh37	17	7576900	7576901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	316	736	0	ENST00000269305.4:c.945dup	p.Pro316SerfsTer21	p.P316Sfs*21	ENST00000269305	NM_001126112.2	315	-/T																																																																														
BRCA1	0	MSKCC	GRCh37	17	41246559	41246560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATTA			P-0019731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	347	801	0	ENST00000357654.3:c.984_988dup	p.Asp330ValfsTer13	p.D330Vfs*13	ENST00000357654	NM_007294.3	330	gat/gTAATGat																																																																														
BCOR	0	MSKCC	GRCh37	X	39923760	39923938	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTGCCTCTCCACAAAGTACTTCTCCACAGGAAGATCTTTGTCCTCTGGGGCTTCAAAGGGATCACGGTGCTTGTTTCCAACACTATACTCGCCTGGGGGAGGGGAGACAAGAGGGCATTAATGAAGCCCGAAGGTCGCCATGAGAAGGCAGGATCTGGGGAGTGCGTGGGACCACCAT	GCTGCCTCTCCACAAAGTACTTCTCCACAGGAAGATCTTTGTCCTCTGGGGCTTCAAAGGGATCACGGTGCTTGTTTCCAACACTATACTCGCCTGGGGGAGGGGAGACAAGAGGGCATTAATGAAGCCCGAAGGTCGCCATGAGAAGGCAGGATCTGGGGAGTGCGTGGGACCACCAT	-			P-0019731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	104	853	0	ENST00000378444.4:c.3239-86_3331del		p.X1080_splice	ENST00000378444	NM_001123385.1	1080																																																																															
BCOR	0	MSKCC	GRCh37	X	39932231	39932231	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1117	288	1147	0	ENST00000378444.4:c.2368A>T	p.Asn790Tyr	p.N790Y	ENST00000378444	NM_001123385.1	790	Aac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	43	690	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0019735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	59	645	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0019735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	59	645	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0019735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	59	645	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	58	641	0	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																																																														
SMAD3	0	MSKCC	GRCh37	15	67358698	67358698	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	26	484	0	ENST00000327367.4:c.206G>T	p.Arg69Met	p.R69M	ENST00000327367	NM_005902.3	69	aGg/aTg																																																																														
AR	0	MSKCC	GRCh37	X	66766603	66766603	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	67	468	0	ENST00000374690.3:c.1615C>T	p.Arg539Cys	p.R539C	ENST00000374690	NM_000044.3	539	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0019737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	101	756	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	178	609	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	63	493	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391761	139391761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	64	765	0	ENST00000277541.6:c.6430G>A	p.Gly2144Ser	p.G2144S	ENST00000277541	NM_017617.3	2144	Ggc/Agc																																																																														
SOX9	0	MSKCC	GRCh37	17	70118888	70118888	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	322	801	0	ENST00000245479.2:c.460T>G	p.Phe154Val	p.F154V	ENST00000245479	NM_000346.3	154	Ttc/Gtc																																																																														
EGFR	0	MSKCC	GRCh37	7	55224469	55224471	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0019737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	94	700	0	ENST00000275493.2:c.1157_1159del	p.Pro386del	p.P386del	ENST00000275493	NM_005228.3	384	aCTCct/act																																																																														
MGA	0	MSKCC	GRCh37	15	42042728	42042728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	40	562	0	ENST00000219905.7:c.6923A>G	p.Asp2308Gly	p.D2308G	ENST00000219905	NM_001164273.1	2308	gAt/gGt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5221206	5221206	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200191658		P-0019740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	315	880	2	ENST00000357368.4:c.3260C>T	p.Thr1087Met	p.T1087M	ENST00000357368	NM_002850.3	1087	aCg/aTg																																																																														
RAD51B	0	MSKCC	GRCh37	14	68352619	68352619	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	129	593	0	ENST00000487270.1:c.486A>C	p.Arg162Ser	p.R162S	ENST00000487270	NM_133509.3	162	agA/agC																																																																														
AMER1	0	MSKCC	GRCh37	X	63413115	63413115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	261	911	0	ENST00000330258.3:c.52G>T	p.Gly18Trp	p.G18W	ENST00000330258	NM_152424.3	18	Ggg/Tgg																																																																														
MED12	0	MSKCC	GRCh37	X	70339299	70339299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019740-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	84	630	0	ENST00000374080.3:c.176C>T	p.Ala59Val	p.A59V	ENST00000374080		59	gCc/gTc																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	61	856	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	27	716	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	17	269	0	ENST00000371953.3:c.802-2A>T		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	17	609	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
IRS2	0	MSKCC	GRCh37	13	110436867	110436867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	69	984	2	ENST00000375856.3:c.1534G>A	p.Ala512Thr	p.A512T	ENST00000375856	NM_003749.2	512	Gcc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	45	942	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	35	541	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
SPEN	0	MSKCC	GRCh37	1	16264491	16264491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	48	649	1	ENST00000375759.3:c.10694G>A	p.Arg3565Gln	p.R3565Q	ENST00000375759	NM_015001.2	3565	cGa/cAa																																																																														
EGFR	0	MSKCC	GRCh37	7	55240789	55240789	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138193597		P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	48	997	1	ENST00000275493.2:c.2033C>T	p.Thr678Met	p.T678M	ENST00000275493	NM_005228.3	678	aCg/aTg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099080	157099080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	21	309	0	ENST00000346085.5:c.17G>C	p.Gly6Ala	p.G6A	ENST00000346085	NM_020732.3	6	gGc/gCc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781375	3781375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	65	905	2	ENST00000262367.5:c.4990C>T	p.Arg1664Cys	p.R1664C	ENST00000262367	NM_004380.2	1664	Cgc/Tgc																																																																														
CARD11	0	MSKCC	GRCh37	7	2962930	2962930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	73	1026	3	ENST00000396946.4:c.1978C>T	p.Arg660Trp	p.R660W	ENST00000396946	NM_032415.4	660	Cgg/Tgg																																																																														
CTCF	0	MSKCC	GRCh37	16	67663356	67663356	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	44	788	3	ENST00000264010.4:c.1760del	p.Asn587MetfsTer44	p.N587Mfs*44	ENST00000264010	NM_006565.3	586	gAa/ga																																																																														
IRS2	0	MSKCC	GRCh37	13	110436057	110436057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1337	87	1184	3	ENST00000375856.3:c.2344G>A	p.Asp782Asn	p.D782N	ENST00000375856	NM_003749.2	782	Gac/Aac																																																																														
MTOR	0	MSKCC	GRCh37	1	11188182	11188182	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	39	486	0	ENST00000361445.4:c.5912C>T	p.Ala1971Val	p.A1971V	ENST00000361445	NM_004958.3	1971	gCc/gTc																																																																														
SOCS1	0	MSKCC	GRCh37	16	11348722	11348722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	95	1090	1	ENST00000332029.2:c.614G>A	p.Ser205Asn	p.S205N	ENST00000332029	NM_003745.1	205	aGc/aAc																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	48	631	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	73	1194	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
GATA3	0	MSKCC	GRCh37	10	8100507	8100507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	48	925	2	ENST00000346208.3:c.481G>A	p.Val161Ile	p.V161I	ENST00000346208		161	Gtc/Atc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27059166	27059166	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	30	458	0	ENST00000324856.7:c.1804-1G>T		p.X602_splice	ENST00000324856	NM_006015.4	602																																																																															
ARID1A	0	MSKCC	GRCh37	1	27100964	27100964	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	45	708	1	ENST00000324856.7:c.4246C>T	p.Gln1416Ter	p.Q1416*	ENST00000324856	NM_006015.4	1416	Caa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101713	27101713	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	65	903	0	ENST00000324856.7:c.4993+2T>C		p.X1665_splice	ENST00000324856	NM_006015.4	1665																																																																															
ELF3	0	MSKCC	GRCh37	1	201982372	201982372	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	97	1132	1	ENST00000359651.3:c.751C>T	p.Arg251Ter	p.R251*	ENST00000359651		251	Cga/Tga																																																																														
ARID2	0	MSKCC	GRCh37	12	46211607	46211607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	23	495	0	ENST00000334344.6:c.573G>A	p.Met191Ile	p.M191I	ENST00000334344	NM_152641.2	191	atG/atA																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445624	49445624	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1331	92	1442	0	ENST00000301067.7:c.1842G>C	p.Glu614Asp	p.E614D	ENST00000301067	NM_003482.3	614	gaG/gaC																																																																														
CD276	0	MSKCC	GRCh37	15	73994848	73994848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	11	160	1	ENST00000318443.5:c.332G>A	p.Arg111His	p.R111H	ENST00000318443	NM_001024736.1	111	cGc/cAc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778569	3778569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	46	791	3	ENST00000262367.5:c.6479C>T	p.Ala2160Val	p.A2160V	ENST00000262367	NM_004380.2	2160	gCg/gTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89341523	89341523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	64	687	0	ENST00000301030.4:c.7547G>A	p.Arg2516His	p.R2516H	ENST00000301030	NM_001256183.1	2516	cGt/cAt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7983655	7983655	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	27	443	0	ENST00000319144.4:c.652G>A	p.Ala218Thr	p.A218T	ENST00000319144	NM_001139.2	218	Gca/Aca																																																																														
RNF43	0	MSKCC	GRCh37	17	56435401	56435401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	54	786	1	ENST00000407977.2:c.1736G>T	p.Arg579Met	p.R579M	ENST00000407977		579	aGg/aTg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31017737	31017737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	38	558	1	ENST00000375687.4:c.599G>A	p.Gly200Asp	p.G200D	ENST00000375687	NM_015338.5	200	gGc/gAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790089	40790089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	36	595	0	ENST00000373198.4:c.2642G>A	p.Arg881Gln	p.R881Q	ENST00000373198	NM_133170.3	881	cGg/cAg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980527	1980527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	54	980	2	ENST00000382891.5:c.3989C>T	p.Ala1330Val	p.A1330V	ENST00000382891	NM_133335.3	1330	gCg/gTg																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200083	138200083	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141614391		P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	40	411	1	ENST00000237289.4:c.1501G>A	p.Ala501Thr	p.A501T	ENST00000237289	NM_001270507.1	501	Gcc/Acc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467736	50467736	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	44	796	0	ENST00000331340.3:c.971C>G	p.Ala324Gly	p.A324G	ENST00000331340	NM_006060.4	324	gCc/gGc																																																																														
BRAF	0	MSKCC	GRCh37	7	140487353	140487353	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	52	984	0	ENST00000288602.6:c.1172A>G	p.Asp391Gly	p.D391G	ENST00000288602	NM_004333.4	391	gAt/gGt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226043	53226043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	47	939	0	ENST00000375401.3:c.2806C>T	p.Arg936Cys	p.R936C	ENST00000375401	NM_004187.3	936	Cgc/Tgc																																																																														
MED12	0	MSKCC	GRCh37	X	70356270	70356270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	61	727	1	ENST00000374080.3:c.5165G>A	p.Arg1722Gln	p.R1722Q	ENST00000374080		1722	cGg/cAg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98238356	98238358	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	ACA			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	37	523	0	ENST00000331920.6:c.1686_1688delinsTGT	p.Ala563Val	p.A563V	ENST00000331920	NM_000264.3	562	gcCGCg/gcTGTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271771	15271775	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGG	GCCGG	ACCA			P-0019741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	1095	63	0	ENST00000263388.2:c.6664_6668delinsTGGT	p.Pro2222TrpfsTer24	p.P2222Wfs*24	ENST00000263388	NM_000435.2	2222	CCGGCg/TGGTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	199	810	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0019742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	163	807	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	213	640	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
BAP1	0	MSKCC	GRCh37	3	52442542	52442542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	188	697	0	ENST00000460680.1:c.203A>G	p.Asp68Gly	p.D68G	ENST00000460680	NM_004656.3	68	gAt/gGt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3843386	3843386	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0019743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	115	263	0	ENST00000262367.5:c.1216+1G>A		p.X406_splice	ENST00000262367	NM_004380.2	406																																																																															
SETD2	0	MSKCC	GRCh37	3	47158246	47158246	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0019743-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	113	315	0	ENST00000409792.3:c.4455-2A>C		p.X1485_splice	ENST00000409792	NM_014159.6	1485																																																																															
RRAS2	0	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	56	654	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																														
JAK3	0	MSKCC	GRCh37	19	17941354	17941354	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	54	988	1	ENST00000458235.1:c.3054C>G	p.Tyr1018Ter	p.Y1018*	ENST00000458235	NM_000215.3	1018	taC/taG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0019748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	182	588	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
ATR	0	MSKCC	GRCh37	3	142272804	142272804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	62	422	0	ENST00000350721.4:c.2395G>A	p.Glu799Lys	p.E799K	ENST00000350721	NM_001184.3	799	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	40	685	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	58	441	0	ENST00000263967.3:c.1625A>C	p.Glu542Ala	p.E542A	ENST00000263967	NM_006218.2	542	gAa/gCa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088646	27088647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	381	552	0	ENST00000324856.7:c.2256dup	p.Met753TyrfsTer64	p.M753Yfs*64	ENST00000324856	NM_006015.4	752	tat/taTt																																																																														
SDHAF2	0	MSKCC	GRCh37	11	61213517	61213517	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	122	385	0	ENST00000301761.2:c.475G>C	p.Glu159Gln	p.E159Q	ENST00000301761	NM_017841.2	159	Gag/Cag																																																																														
TSC2	0	MSKCC	GRCh37	16	2098638	2098638	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	118	465	0	ENST00000219476.3:c.22G>C	p.Asp8His	p.D8H	ENST00000219476	NM_000548.3	8	Gat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	304	760	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	199	647	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
STAG2	0	MSKCC	GRCh37	X	123227896	123227896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	56	538	0	ENST00000218089.9:c.3607G>A	p.Asp1203Asn	p.D1203N	ENST00000218089	NM_001042749.1	1203	Gat/Aat																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222406	2222406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	171	617	0	ENST00000398665.3:c.3238G>A	p.Gly1080Arg	p.G1080R	ENST00000398665	NM_032482.2	1080	Ggg/Agg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9787046	9787046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	132	697	0	ENST00000377346.4:c.3077G>A	p.Ser1026Asn	p.S1026N	ENST00000377346	NM_005026.3	1026	aGc/aAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89624301	89624301	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	266	800	0	ENST00000371953.3:c.75del	p.Thr26ProfsTer28	p.T26Pfs*28	ENST00000371953	NM_000314.4	25	ttG/tt																																																																														
TBX3	0	MSKCC	GRCh37	12	115115385	115115386	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0019749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	97	655	0	ENST00000257566.3:c.940dup	p.Arg314LysfsTer13	p.R314Kfs*13	ENST00000257566	NM_016569.3	314	aga/aAga																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186506975	186506977	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0019749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	66	334	0	ENST00000323963.5:c.1141_1143del	p.Asp381del	p.D381del	ENST00000323963		381	GAC/-																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859639	151859639	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	153	394	0	ENST00000262189.6:c.11023C>T	p.Gln3675Ter	p.Q3675*	ENST00000262189	NM_170606.2	3675	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	341	877	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99185071	99185072	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0019752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	64	535	0	ENST00000074304.5:c.2476_2477del	p.Ser826PhefsTer9	p.S826Ffs*9	ENST00000074304	NM_001134224.1	825	GAg/g																																																																														
EGFR	0	MSKCC	GRCh37	7	55231463	55231463	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	251	652	0	ENST00000275493.2:c.1669C>T	p.Gln557Ter	p.Q557*	ENST00000275493	NM_005228.3	557	Cag/Tag																																																																														
SMO	0	MSKCC	GRCh37	7	128850823	128850823	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	252	816	0	ENST00000249373.3:c.1670A>C	p.Asp557Ala	p.D557A	ENST00000249373	NM_005631.4	557	gAc/gCc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223685	53223685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	277	1017	0	ENST00000375401.3:c.3674C>A	p.Pro1225His	p.P1225H	ENST00000375401	NM_004187.3	1225	cCc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	146	416	2	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
MEN1	0	MSKCC	GRCh37	11	64575550	64575550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	228	688	0	ENST00000337652.1:c.482G>T	p.Gly161Val	p.G161V	ENST00000337652	NM_130803.2	161	gGt/gTt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67569832	67569832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	118	418	0	ENST00000274335.5:c.493C>T	p.Leu165Phe	p.L165F	ENST00000274335		165	Ctt/Ttt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	270	717	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	124	582	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	124	582	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0019754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	124	582	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
RNF43	0	MSKCC	GRCh37	17	56439981	56439981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	222	1005	1	ENST00000407977.2:c.611C>G	p.Thr204Arg	p.T204R	ENST00000407977		204	aCa/aGa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790042	40790042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	132	638	0	ENST00000373198.4:c.2689A>G	p.Ile897Val	p.I897V	ENST00000373198	NM_133170.3	897	Atc/Gtc																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	73	949	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	120	807	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	123	780	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
CDH1	0	MSKCC	GRCh37	16	68849591	68849592	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	108	663	0	ENST00000261769.5:c.1497dup	p.Gly500TrpfsTer37	p.G500Wfs*37	ENST00000261769	NM_004360.3	498	-/T																																																																														
PTPN11	0	MSKCC	GRCh37	12	112892398	112892398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143433437		P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	110	656	1	ENST00000351677.2:c.556C>T	p.Arg186Trp	p.R186W	ENST00000351677	NM_002834.3	186	Cgg/Tgg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71161782	71161782	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	30	217	0	ENST00000318789.4:c.187C>T	p.Gln63Ter	p.Q63*	ENST00000318789	NM_032682.5	63	Cag/Tag																																																																														
TET2	0	MSKCC	GRCh37	4	106157663	106157663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	62	374	0	ENST00000380013.4:c.2564C>T	p.Ala855Val	p.A855V	ENST00000380013	NM_001127208.2	855	gCa/gTa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44937744	44937744	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	103	590	0	ENST00000377967.4:c.2932A>T	p.Lys978Ter	p.K978*	ENST00000377967	NM_021140.2	978	Aag/Tag																																																																														
AR	0	MSKCC	GRCh37	X	66905889	66905889	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	71	501	0	ENST00000374690.3:c.1806C>A	p.Cys602Ter	p.C602*	ENST00000374690	NM_000044.3	602	tgC/tgA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	164	432	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347581	89347581	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	28	604	0	ENST00000301030.4:c.5369C>A	p.Ser1790Ter	p.S1790*	ENST00000301030	NM_001256183.1	1790	tCg/tAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593558	48593558	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0019759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	17	185	1	ENST00000342988.3:c.1308+1G>T		p.X436_splice	ENST00000342988	NM_005359.5	436																																																																															
KMT2A	0	MSKCC	GRCh37	11	118370564	118370564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	18	464	1	ENST00000534358.1:c.6094G>A	p.Asp2032Asn	p.D2032N	ENST00000534358	NM_005933.3	2032	Gac/Aac																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138202322	138202322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	11	576	0	ENST00000237289.4:c.2239G>A	p.Ala747Thr	p.A747T	ENST00000237289	NM_001270507.1	747	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	41	598	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0019762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	41	425	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
AKT1	0	MSKCC	GRCh37	14	105239420	105239420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	60	611	0	ENST00000349310.3:c.967G>A	p.Asp323Asn	p.D323N	ENST00000349310	NM_001014432.1	323	Gac/Aac																																																																														
INPPL1	0	MSKCC	GRCh37	11	71946495	71946495	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	47	509	1	ENST00000298229.2:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000298229	NM_001567.3	887	Gag/Aag																																																																														
ARID2	0	MSKCC	GRCh37	12	46246143	46246143	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	54	431	2	ENST00000334344.6:c.4237G>T	p.Glu1413Ter	p.E1413*	ENST00000334344	NM_152641.2	1413	Gaa/Taa																																																																														
HLA-A	0	MSKCC	GRCh37	6	29912167	29912183	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGATGGGGTAAGGAGG	GAGATGGGGTAAGGAGG	-			P-0019762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	14	162	0	ENST00000376809.5:c.895+2_895+18del		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																															
KLF4	0	MSKCC	GRCh37	9	110248151	110248151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	54	446	0	ENST00000374672.4:c.1321G>C	p.Asp441His	p.D441H	ENST00000374672	NM_004235.4	441	Gat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	215	764	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																														
SPEN	0	MSKCC	GRCh37	1	16257950	16257950	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	165	507	0	ENST00000375759.3:c.5218del	p.Ala1740ProfsTer10	p.A1740Pfs*10	ENST00000375759	NM_015001.2	1739	Ggg/gg																																																																														
ATM	0	MSKCC	GRCh37	11	108225590	108225590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	120	686	0	ENST00000278616.4:c.8839A>G	p.Thr2947Ala	p.T2947A	ENST00000278616	NM_000051.3	2947	Acc/Gcc																																																																														
BCOR	0	MSKCC	GRCh37	X	39934105	39934105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	115	856	1	ENST00000378444.4:c.494C>T	p.Ala165Val	p.A165V	ENST00000378444	NM_001123385.1	165	gCg/gTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	409	928	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0019772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	196	749	1	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
ARID2	0	MSKCC	GRCh37	12	46243969	46243969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	63	749	0	ENST00000334344.6:c.2063C>G	p.Pro688Arg	p.P688R	ENST00000334344	NM_152641.2	688	cCt/cGt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99442738	99442738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	51	911	0	ENST00000268035.6:c.1135G>A	p.Gly379Arg	p.G379R	ENST00000268035	NM_000875.3	379	Ggg/Agg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46252756	46252756	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	65	749	0	ENST00000371998.3:c.185T>C	p.Phe62Ser	p.F62S	ENST00000371998		62	tTc/tCc																																																																														
FAT1	0	MSKCC	GRCh37	4	187557316	187557330	+	inframe_deletion	In_Frame_Del	DEL	GGCTTGGAGATCCAT	GGCTTGGAGATCCAT	-			P-0019772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	34	751	0	ENST00000441802.2:c.4032_4046del	p.Glu1344_Pro1349delinsAsp	p.E1344_P1349delinsD	ENST00000441802	NM_005245.3	1344	gaATGGATCTCCAAGCCc/gac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	147	408	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	144	646	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
POLD1	0	MSKCC	GRCh37	19	50918843	50918843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	74	791	0	ENST00000440232.2:c.2713G>A	p.Glu905Lys	p.E905K	ENST00000440232	NM_002691.3	905	Gag/Aag																																																																														
MED12	0	MSKCC	GRCh37	X	70346960	70346960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	81	449	0	ENST00000374080.3:c.2827C>A	p.Gln943Lys	p.Q943K	ENST00000374080		943	Cag/Aag																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111907691	111907693	+	missense_variant	Missense_Mutation	ONP	TGG	TGG	CGA			P-0019773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	66	499	0	ENST00000393256.3:c.465_467delinsCGA	p.Gly156Glu	p.G156E	ENST00000393256	NM_006538.4	155	atTGGa/atCGAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577523	7577524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	227	641	0	ENST00000269305.4:c.757dup	p.Thr253AsnfsTer11	p.T253Nfs*11	ENST00000269305	NM_001126112.2	253	acc/aAcc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164875	36164876	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	388	871	0	ENST00000300305.3:c.999dup	p.Arg334AlafsTer266	p.R334Afs*266	ENST00000300305		333	-/G																																																																														
NSD1	0	MSKCC	GRCh37	5	176665332	176665332	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	58	474	1	ENST00000439151.2:c.4016A>T	p.Lys1339Ile	p.K1339I	ENST00000439151	NM_022455.4	1339	aAa/aTa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508336	106508336	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	89	348	0	ENST00000359195.3:c.330C>A	p.Tyr110Ter	p.Y110*	ENST00000359195	NM_002649.2	110	taC/taA																																																																														
RXRA	0	MSKCC	GRCh37	9	137323830	137323830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	91	790	0	ENST00000481739.1:c.1123C>T	p.Leu375Phe	p.L375F	ENST00000481739	NM_002957.4	375	Ctc/Ttc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	171	710	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																														
APC	0	MSKCC	GRCh37	5	112175940	112175943	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0019777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	19	449	0	ENST00000257430.4:c.4652_4655del	p.Lys1551ArgfsTer13	p.K1551Rfs*13	ENST00000257430	NM_000038.5	1550	gAGAAa/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	146	1229	4	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
ALK	0	MSKCC	GRCh37	2	29416431	29416431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	99	1082	0	ENST00000389048.3:c.4522G>A	p.Gly1508Ser	p.G1508S	ENST00000389048	NM_004304.4	1508	Ggc/Agc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431667	49431667	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	63	1081	2	ENST00000301067.7:c.9472C>T	p.Gln3158Ter	p.Q3158*	ENST00000301067	NM_003482.3	3158	Cag/Tag																																																																														
IL7R	0	MSKCC	GRCh37	5	35876226	35876226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	86	876	0	ENST00000303115.3:c.1018C>G	p.Leu340Val	p.L340V	ENST00000303115	NM_002185.3	340	Ctt/Gtt																																																																														
SPEN	0	MSKCC	GRCh37	1	16261077	16261077	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	96	776	0	ENST00000375759.3:c.8345del	p.Asn2782ThrfsTer11	p.N2782Tfs*11	ENST00000375759	NM_015001.2	2781	gAa/ga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32929426	32929426	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	170	772	0	ENST00000380152.3:c.7435+1G>A		p.X2479_splice	ENST00000380152		2479																																																																															
TP53	0	MSKCC	GRCh37	17	7578497	7578497	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	232	1345	0	ENST00000269305.4:c.433del	p.Leu145CysfsTer25	p.L145Cfs*25	ENST00000269305	NM_001126112.2	145	Ctg/tg																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7983243	7983243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	39	738	0	ENST00000319144.4:c.771C>G	p.His257Gln	p.H257Q	ENST00000319144	NM_001139.2	257	caC/caG																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805940	46805940	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	64	496	0	ENST00000290295.7:c.16T>C	p.Tyr6His	p.Y6H	ENST00000290295	NM_006361.5	6	Tat/Cat																																																																														
BABAM1	0	MSKCC	GRCh37	19	17389808	17389808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	80	1312	0	ENST00000359435.4:c.941G>A	p.Ser314Asn	p.S314N	ENST00000359435	NM_001033549.1	314	aGc/aAc																																																																														
AKT2	0	MSKCC	GRCh37	19	40744822	40744822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	85	976	0	ENST00000392038.2:c.698A>G	p.Asn233Ser	p.N233S	ENST00000392038	NM_001626.4	233	aAc/aGc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518270	8518270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	20	410	2	ENST00000356435.5:c.1121C>T	p.Ala374Val	p.A374V	ENST00000356435		374	gCg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	132	599	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MTOR	0	MSKCC	GRCh37	1	11169377	11169377	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	79	772	0	ENST00000361445.4:c.7498A>T	p.Ile2500Phe	p.I2500F	ENST00000361445	NM_004958.3	2500	Att/Ttt																																																																														
TBX3	0	MSKCC	GRCh37	12	115115433	115115433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	164	788	0	ENST00000257566.3:c.893C>T	p.Pro298Leu	p.P298L	ENST00000257566	NM_016569.3	298	cCt/cTt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061184	38061184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	79	574	0	ENST00000250448.2:c.805G>A	p.Glu269Lys	p.E269K	ENST00000250448	NM_004496.3	269	Gag/Aag																																																																														
DROSHA	0	MSKCC	GRCh37	5	31515117	31515117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	93	940	1	ENST00000344624.3:c.1268C>G	p.Ser423Cys	p.S423C	ENST00000344624		423	tCc/tGc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177488	56177488	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	97	449	0	ENST00000399503.3:c.2462del	p.Leu821Ter	p.L821*	ENST00000399503	NM_005921.1	821	Ttg/tg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56183331	56183331	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	144	644	0	ENST00000399503.3:c.4241delC	p.Ala1414AspfsTer8	p.A1414Dfs*8	ENST00000399503	NM_005921.1	1414	gCa/ga																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877878	151877878	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0019784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	108	431	0	ENST00000262189.6:c.7067delinsTT	p.Pro2356LeufsTer11	p.P2356Lfs*11	ENST00000262189	NM_170606.2	2356	cCt/cTTt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	72	327	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0019785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	176	530	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	223	810	3	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
DICER1	0	MSKCC	GRCh37	14	95598926	95598926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	155	649	2	ENST00000343455.3:c.233C>A	p.Thr78Asn	p.T78N	ENST00000343455	NM_177438.2	78	aCt/aAt																																																																														
APC	0	MSKCC	GRCh37	5	112173552	112173552	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	141	477	0	ENST00000257430.4:c.2262del	p.Arg755GlyfsTer6	p.R755Gfs*6	ENST00000257430	NM_000038.5	754	gTt/gt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449858	149449859	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	246	1068	0	ENST00000286301.3:c.1205dup	p.Glu403ArgfsTer37	p.E403Rfs*37	ENST00000286301	NM_005211.3	402	cca/ccCa																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	295	691	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TBX3	0	MSKCC	GRCh37	12	115118831	115118831	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	179	586	0	ENST00000257566.3:c.510G>A	p.Trp170Ter	p.W170*	ENST00000257566	NM_016569.3	170	tgG/tgA																																																																														
CTCF	0	MSKCC	GRCh37	16	67645412	67645412	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	83	649	0	ENST00000264010.4:c.677A>T	p.Tyr226Phe	p.Y226F	ENST00000264010	NM_006565.3	226	tAc/tTc																																																																														
CTCF	0	MSKCC	GRCh37	16	67660557	67660557	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	369	876	0	ENST00000264010.4:c.1457A>C	p.Gln486Pro	p.Q486P	ENST00000264010	NM_006565.3	486	cAg/cCg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11958307	11958308	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0019787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	124	612	0	ENST00000353533.5:c.217_218del	p.Ile73ArgfsTer9	p.I73Rfs*9	ENST00000353533	NM_003010.3	73	ATa/a																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578396	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0019788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	39	640	0	ENST00000269305.4:c.534_536del	p.His179del	p.H179del	ENST00000269305	NM_001126112.2	178	caCCAt/cat																																																																														
MSH2	0	MSKCC	GRCh37	2	47635621	47635621	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	78	730	0	ENST00000233146.2:c.293A>C	p.Tyr98Ser	p.Y98S	ENST00000233146	NM_000251.2	98	tAt/tCt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412336	139412336	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	48	798	0	ENST00000277541.6:c.1309G>T	p.Glu437Ter	p.E437*	ENST00000277541	NM_017617.3	437	Gag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89720805	89720808	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0019790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	33	444	0	ENST00000371953.3:c.956_959delCTTT	p.Thr319LysfsTer24	p.T319Kfs*24	ENST00000371953	NM_000314.4	319	aCTTTa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0019790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	20	405	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
CTCF	0	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	293	514	0	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	158	364	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0019791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	167	397	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
ARID1A	0	MSKCC	GRCh37	1	27023612	27023613	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTCCGGCGC			P-0019791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	44	474	0	ENST00000324856.7:c.720_729dup	p.Ala244LeufsTer159	p.A244Lfs*159	ENST00000324856	NM_006015.4	240	ggc/gGCTCCGGCGCgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	589	697	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50488314	50488314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	177	676	0	ENST00000394963.4:c.1228T>C	p.Ser410Pro	p.S410P	ENST00000394963	NM_003076.4	410	Tcc/Ccc																																																																														
TP53	0	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	83	861	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	119	645	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																														
PTEN	0	MSKCC	GRCh37	10	89717615	89717666	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGAC	CAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGAC	-			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	117	629	1	ENST00000371953.3:c.641_692del	p.Gln214ProfsTer25	p.Q214Pfs*25	ENST00000371953	NM_000314.4	214	CAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACcc/cc																																																																														
FGF3	0	MSKCC	GRCh37	11	69631165	69631165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	80	1004	1	ENST00000334134.2:c.247G>T	p.Val83Leu	p.V83L	ENST00000334134	NM_005247.2	83	Gtg/Ttg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032538	12032539	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAAA			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	71	615	0	ENST00000353533.5:c.975_976insAAAT	p.Pro326LysfsTer6	p.P326Kfs*6	ENST00000353533	NM_003010.3	325	cct/ccTAAAt																																																																														
IRS1	0	MSKCC	GRCh37	2	227663069	227663069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	62	614	2	ENST00000305123.5:c.386C>T	p.Ala129Val	p.A129V	ENST00000305123	NM_005544.2	129	gCg/gTg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66218787	66218787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	25	623	0	ENST00000273854.3:c.2271G>T	p.Glu757Asp	p.E757D	ENST00000273854	NM_004439.5	757	gaG/gaT																																																																														
CARD11	0	MSKCC	GRCh37	7	2987346	2987346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	43	1007	0	ENST00000396946.4:c.83G>C	p.Cys28Ser	p.C28S	ENST00000396946	NM_032415.4	28	tGt/tCt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391383	139391383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019794-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	95	1136	3	ENST00000277541.6:c.6808C>T	p.Pro2270Ser	p.P2270S	ENST00000277541	NM_017617.3	2270	Cca/Tca																																																																														
ELF3	0	MSKCC	GRCh37	1	201981878	201981879	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	110	1250	0	ENST00000359651.3:c.591dup	p.Thr198HisfsTer19	p.T198Hfs*19	ENST00000359651		197	tcc/tCcc																																																																														
AXIN1	0	MSKCC	GRCh37	16	347106	347106	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1255	122	1321	2	ENST00000262320.3:c.1905G>A	p.Trp635Ter	p.W635*	ENST00000262320	NM_003502.3	635	tgG/tgA																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	170	614	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68855921	68855921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	281	427	0	ENST00000261769.5:c.1729G>T	p.Gly577Ter	p.G577*	ENST00000261769	NM_004360.3	577	Gga/Tga																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	192	629	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0019802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	89	804	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49447394	49447394	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	93	911	0	ENST00000301067.7:c.704C>G	p.Pro235Arg	p.P235R	ENST00000301067	NM_003482.3	235	cCa/cGa																																																																														
U2AF1	0	MSKCC	GRCh37	21	44514892	44514892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	102	540	1	ENST00000291552.4:c.355C>T	p.Arg119Cys	p.R119C	ENST00000291552	NM_006758.2	119	Cgt/Tgt																																																																														
ARID2	0	MSKCC	GRCh37	12	46244610	46244613	+	frameshift_variant	Frame_Shift_Del	DEL	CCTT	CCTT	-			P-0019803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	60	641	0	ENST00000334344.6:c.2705_2708del	p.Pro902LeufsTer24	p.P902Lfs*24	ENST00000334344	NM_152641.2	902	CCTTct/ct																																																																														
VHL	0	MSKCC	GRCh37	3	10188222	10188222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	60	654	0	ENST00000256474.2:c.365C>T	p.Ala122Val	p.A122V	ENST00000256474	NM_000551.3	122	gCa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	112	763	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CEBPA	0	MSKCC	GRCh37	19	33793131	33793131	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	145	713	0	ENST00000498907.2:c.190A>G	p.Ile64Val	p.I64V	ENST00000498907	NM_004364.3	64	Atc/Gtc																																																																														
IRS2	0	MSKCC	GRCh37	13	110435918	110435918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	166	812	0	ENST00000375856.3:c.2483C>T	p.Ser828Phe	p.S828F	ENST00000375856	NM_003749.2	828	tCc/tTc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2226308	2226308	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	161	898	0	ENST00000326181.6:c.1921C>G	p.Arg641Gly	p.R641G	ENST00000326181	NM_032271.2	641	Cgt/Ggt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259079	89259079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	57	418	3	ENST00000336596.2:c.223G>T	p.Asp75Tyr	p.D75Y	ENST00000336596	NM_005233.5	75	Gac/Tac																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670870	134670870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	70	403	0	ENST00000398015.3:c.781C>G	p.Pro261Ala	p.P261A	ENST00000398015	NM_004441.4	261	Cct/Gct																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250607	26250607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	88	487	3	ENST00000446824.2:c.227C>A	p.Ala76Glu	p.A76E	ENST00000446824	NM_021018.2	76	gCg/gAg																																																																														
STK19	0	MSKCC	GRCh37	6	31940102	31940102	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	173	948	0	ENST00000375331.2:c.244C>G	p.Arg82Gly	p.R82G	ENST00000375331	NM_004197.1	82	Cgt/Ggt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	170	873	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	153	840	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
EGFR	0	MSKCC	GRCh37	7	55242494	55242494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	151	733	0	ENST00000275493.2:c.2264C>G	p.Ala755Gly	p.A755G	ENST00000275493	NM_005228.3	755	gCc/gGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	268	695	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
CDK8	0	MSKCC	GRCh37	13	26974650	26974650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	320	879	1	ENST00000381527.3:c.994G>A	p.Asp332Asn	p.D332N	ENST00000381527	NM_001260.1	332	Gac/Aac																																																																														
RAD51B	0	MSKCC	GRCh37	14	68292188	68292188	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	105	477	0	ENST00000487270.1:c.92T>C	p.Leu31Ser	p.L31S	ENST00000487270	NM_133509.3	31	tTa/tCa																																																																														
HGF	0	MSKCC	GRCh37	7	81336639	81336639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	391	722	0	ENST00000222390.5:c.1583G>A	p.Trp528Ter	p.W528*	ENST00000222390	NM_000601.4	528	tGg/tAg																																																																														
APC	0	MSKCC	GRCh37	5	112174783	112174783	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	81	455	0	ENST00000257430.4:c.3495del	p.Lys1165AsnfsTer17	p.K1165Nfs*17	ENST00000257430	NM_000038.5	1164	atA/at																																																																														
TP53	0	MSKCC	GRCh37	17	7579484	7579484	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	140	830	0	ENST00000269305.4:c.203del	p.Glu68GlyfsTer55	p.E68Gfs*55	ENST00000269305	NM_001126112.2	68	gAg/gg																																																																														
STAT3	0	MSKCC	GRCh37	17	40500453	40500453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	64	632	0	ENST00000264657.5:c.82A>G	p.Met28Val	p.M28V	ENST00000264657	NM_139276.2	28	Atg/Gtg																																																																														
RNF43	0	MSKCC	GRCh37	17	56440934	56440934	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	63	912	0	ENST00000407977.2:c.403A>T	p.Ser135Cys	p.S135C	ENST00000407977		135	Agt/Tgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575117	48575117	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	95	500	0	ENST00000342988.3:c.311T>G	p.Leu104Arg	p.L104R	ENST00000342988	NM_005359.5	104	cTt/cGt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251888	153251888	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	26	542	0	ENST00000281708.4:c.1118del	p.Pro373LeufsTer4	p.P373Lfs*4	ENST00000281708	NM_033632.3	373	cCt/ct																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739097	145739097	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	105	576	0	ENST00000428558.2:c.2059-1G>A		p.X687_splice	ENST00000428558	NM_004260.3	687																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	203	589	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	239	639	2	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	249	513	0	ENST00000399503.3:c.819_820delAG	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	8	629	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178622	56178622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	434	388	0	ENST00000399503.3:c.3595C>T	p.Gln1199Ter	p.Q1199*	ENST00000399503	NM_005921.1	1199	Cag/Tag																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867502	45867502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	261	918	0	ENST00000391945.4:c.806C>T	p.Thr269Met	p.T269M	ENST00000391945	NM_000400.3	269	aCg/aTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832320	72832320	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	162	608	1	ENST00000268489.5:c.4261C>T	p.Gln1421Ter	p.Q1421*	ENST00000268489	NM_006885.3	1421	Cag/Tag																																																																														
RPTOR	0	MSKCC	GRCh37	17	78921038	78921038	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	139	807	0	ENST00000306801.3:c.3152G>A	p.Trp1051Ter	p.W1051*	ENST00000306801	NM_020761.2	1051	tGg/tAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	163	741	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	27	756	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
POLD1	0	MSKCC	GRCh37	19	50902181	50902181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	155	878	0	ENST00000440232.2:c.73G>A	p.Asp25Asn	p.D25N	ENST00000440232	NM_002691.3	25	Gat/Aat																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9781914	9781920	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AGCAGGT	AGCAGGT	-			P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	57	667	0	ENST00000377346.4:c.2051_2055+2del		p.X684_splice	ENST00000377346	NM_005026.3	684																																																																															
PRKD1	0	MSKCC	GRCh37	14	30135349	30135349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	71	717	0	ENST00000331968.5:c.469C>T	p.Pro157Ser	p.P157S	ENST00000331968	NM_002742.2	157	Cca/Tca																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984834	11984835	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	138	641	0	ENST00000353533.5:c.382dup	p.Met128AsnfsTer4	p.M128Nfs*4	ENST00000353533	NM_003010.3	127	ata/atAa																																																																														
NF1	0	MSKCC	GRCh37	17	29586148	29586148	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0019810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	97	538	0	ENST00000358273.4:c.4430+1G>C		p.X1477_splice	ENST00000358273	NM_001042492.2	1477																																																																															
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	378	695	0	ENST00000269305.4:c.536A>C	p.His179Pro	p.H179P	ENST00000269305	NM_001126112.2	179	cAt/cCt																																																																														
NF1	0	MSKCC	GRCh37	17	29586046	29586059	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTAGATACTTCAGA	GTAGATACTTCAGA	-			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	221	402	1	ENST00000358273.4:c.4333-1_4345del		p.X1445_splice	ENST00000358273	NM_001042492.2	1445																																																																															
IDH1	0	MSKCC	GRCh37	2	209113377	209113377	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	85	301	0	ENST00000345146.2:c.130T>G	p.Leu44Val	p.L44V	ENST00000345146	NM_005896.2	44	Tta/Gta																																																																														
FAT1	0	MSKCC	GRCh37	4	187542337	187542338	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	185	357	0	ENST00000441802.2:c.5402_5403del	p.Lys1801ArgfsTer12	p.K1801Rfs*12	ENST00000441802	NM_005245.3	1801	aAA/a																																																																														
MSH3	0	MSKCC	GRCh37	5	80064770	80064771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	488	763	0	ENST00000265081.6:c.2206dup	p.Ile736AsnfsTer32	p.I736Nfs*32	ENST00000265081	NM_002439.4	734	cga/cgAa																																																																														
RASA1	0	MSKCC	GRCh37	5	86659287	86659290	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	245	445	0	ENST00000274376.6:c.1579_1582del	p.Val527MetfsTer16	p.V527Mfs*16	ENST00000274376	NM_002890.2	526	TCTGtc/tc																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045946	26045946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	105	509	0	ENST00000540144.1:c.308G>C	p.Gly103Ala	p.G103A	ENST00000540144	NM_003531.2	103	gGa/gCa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395048	139395053	+	inframe_deletion	In_Frame_Del	DEL	GGGTGC	GGGTGC	-			P-0019813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	480	666	0	ENST00000277541.6:c.5885_5890del	p.Arg1962_Thr1963del	p.R1962_T1963del	ENST00000277541	NM_017617.3	1962	cGCACCCcg/ccg																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	336	818	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
TP63	0	MSKCC	GRCh37	3	189455592	189455592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	149	947	0	ENST00000264731.3:c.126G>C	p.Gln42His	p.Q42H	ENST00000264731	NM_003722.4	42	caG/caC																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	121	861	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	245	774	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	91	695	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	210	732	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	100	513	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101152	41101152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	134	778	0	ENST00000373198.4:c.1204C>A	p.Gln402Lys	p.Q402K	ENST00000373198	NM_133170.3	402	Cag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	91	357	0	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																														
AMER1	0	MSKCC	GRCh37	X	63412925	63412925	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	510	472	0	ENST00000330258.3:c.242del	p.Ser81LeufsTer19	p.S81Lfs*19	ENST00000330258	NM_152424.3	81	tCt/tt																																																																														
ETV6	0	MSKCC	GRCh37	12	12038879	12038879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	270	645	0	ENST00000396373.4:c.1172A>G	p.Tyr391Cys	p.Y391C	ENST00000396373	NM_001987.4	391	tAt/tGt																																																																														
SOS1	0	MSKCC	GRCh37	2	39283886	39283886	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	161	812	0	ENST00000402219.2:c.467A>G	p.Glu156Gly	p.E156G	ENST00000402219	NM_005633.3	156	gAa/gGa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730909	40730909	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201064715		P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	64	652	0	ENST00000373198.4:c.3626G>A	p.Arg1209Gln	p.R1209Q	ENST00000373198	NM_133170.3	1209	cGg/cAg																																																																														
KIT	0	MSKCC	GRCh37	4	55561756	55561756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	43	429	1	ENST00000288135.5:c.146G>A	p.Arg49His	p.R49H	ENST00000288135	NM_000222.2	49	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	157	751	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482752	67482752	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0019820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	23	571	0	ENST00000327367.4:c.1156A>T	p.Arg386Ter	p.R386*	ENST00000327367	NM_005902.3	386	Aga/Tga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589570	67589570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	104	542	0	ENST00000274335.5:c.1333G>A	p.Val445Ile	p.V445I	ENST00000274335		445	Gta/Ata																																																																														
NSD1	0	MSKCC	GRCh37	5	176639170	176639170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	44	626	0	ENST00000439151.2:c.3770C>A	p.Thr1257Lys	p.T1257K	ENST00000439151	NM_022455.4	1257	aCa/aAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0019823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	85	860	1	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0019823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	79	632	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
MET	0	MSKCC	GRCh37	7	116340309	116340309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	37	418	1	ENST00000397752.3:c.1171G>A	p.Gly391Arg	p.G391R	ENST00000397752	NM_000245.2	391	Gga/Aga																																																																														
CSDE1	0	MSKCC	GRCh37	1	115273198	115273198	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	269	721	0	ENST00000438362.2:c.1260C>G	p.Phe420Leu	p.F420L	ENST00000438362	NM_001242891.1	420	ttC/ttG																																																																														
APC	0	MSKCC	GRCh37	5	112175958	112175958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	78	416	0	ENST00000257430.4:c.4667C>G	p.Thr1556Ser	p.T1556S	ENST00000257430	NM_000038.5	1556	aCt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	410	680	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	191	685	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	197	772	1	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12044524	12044525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0019834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	196	669	0	ENST00000353533.5:c.1148_1149insCA	p.Lys383AsnfsTer31	p.K383Nfs*31	ENST00000353533	NM_003010.3	383	aaa/aACaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	48	704	0	ENST00000269305.4:c.497C>A	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tAa																																																																														
ATM	0	MSKCC	GRCh37	11	108139264	108139279	+	frameshift_variant	Frame_Shift_Del	DEL	TATTCGGAGGAAATTG	TATTCGGAGGAAATTG	-			P-0019836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	48	787	0	ENST00000278616.4:c.2767_2782del	p.Ile923Ter	p.I923*	ENST00000278616	NM_000051.3	922	gaTATTCGGAGGAAATTG/ga																																																																														
PTEN	0	MSKCC	GRCh37	10	89692830	89692853	+	inframe_deletion	In_Frame_Del	DEL	GTGAAGATCTTGACCAATGGCTAA	GTGAAGATCTTGACCAATGGCTAA	-			P-0019839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	45	247	0	ENST00000371953.3:c.322_345del	p.Leu108_Asp115del	p.L108_D115del	ENST00000371953	NM_000314.4	105	tGTGAAGATCTTGACCAATGGCTAAgt/tgt																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950156	38950156	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	39	616	0	ENST00000357387.3:c.3794A>C	p.Lys1265Thr	p.K1265T	ENST00000357387	NM_152756.3	1265	aAg/aCg																																																																														
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	235	560	2	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
RB1	0	MSKCC	GRCh37	13	49039193	49039193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	223	672	0	ENST00000267163.4:c.2271C>G	p.Asn757Lys	p.N757K	ENST00000267163	NM_000321.2	757	aaC/aaG																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943673	9943673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	329	700	0	ENST00000330684.3:c.1268A>G	p.Asp423Gly	p.D423G	ENST00000330684	NM_001134407.1	423	gAc/gGc																																																																														
MST1R	0	MSKCC	GRCh37	3	49934746	49934746	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	435	804	1	ENST00000296474.3:c.2150T>C	p.Val717Ala	p.V717A	ENST00000296474	NM_002447.2	717	gTg/gCg																																																																														
KIT	0	MSKCC	GRCh37	4	55561741	55561741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	188	429	0	ENST00000288135.5:c.131C>T	p.Ser44Leu	p.S44L	ENST00000288135	NM_000222.2	44	tCa/tTa																																																																														
MET	0	MSKCC	GRCh37	7	116435719	116435719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	197	403	0	ENST00000397752.3:c.3809G>A	p.Gly1270Asp	p.G1270D	ENST00000397752	NM_000245.2	1270	gGc/gAc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738431	145738431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1565	241	738	0	ENST00000428558.2:c.2554G>A	p.Ala852Thr	p.A852T	ENST00000428558	NM_004260.3	852	Gcc/Acc																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871870	12871888	+	stop_lost,splice_region_variant,3_prime_UTR_variant	Nonstop_Mutation	DEL	GTCAAACGTAAACAGCTCG	GTCAAACGTAAACAGCTCG	-			P-0019842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	68	365	0	ENST00000228872.4:c.589_*8+2del		p.*197*	ENST00000228872	NM_004064.3	196																																																																															
KMT2D	0	MSKCC	GRCh37	12	49426778	49426778	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	16	234	0	ENST00000301067.7:c.11710C>T	p.Gln3904Ter	p.Q3904*	ENST00000301067	NM_003482.3	3904	Cag/Tag																																																																														
CDK12	51755	MSKCC	GRCh37	17	37665993	37665993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	23	592	0	ENST00000447079.4:c.2645G>A	p.Arg882Gln	p.R882Q	ENST00000447079	NM_015083.1	882	cGg/cAg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56180557	56180557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	72	694	0	ENST00000399503.3:c.3886A>G	p.Arg1296Gly	p.R1296G	ENST00000399503	NM_005921.1	1296	Aga/Gga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	11	553	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	145	509	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MGA	0	MSKCC	GRCh37	15	41962066	41962066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	48	496	0	ENST00000219905.7:c.974C>T	p.Ser325Phe	p.S325F	ENST00000219905	NM_001164273.1	325	tCc/tTc																																																																														
SETD2	0	MSKCC	GRCh37	3	47143031	47143031	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	105	600	0	ENST00000409792.3:c.4932del	p.Gln1645AsnfsTer2	p.Q1645Nfs*2	ENST00000409792	NM_014159.6	1644	ggA/gg																																																																														
SETD2	0	MSKCC	GRCh37	3	47164103	47164103	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	76	387	0	ENST00000409792.3:c.2023G>T	p.Gly675Ter	p.G675*	ENST00000409792	NM_014159.6	675	Gga/Tga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	73	640	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	113	683	12	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	15	555	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	96	562	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	50	593	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	107	749	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	121	890	1	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	66	700	0	ENST00000269305.4:c.757A>G	p.Thr253Ala	p.T253A	ENST00000269305	NM_001126112.2	253	Acc/Gcc																																																																														
TSC1	0	MSKCC	GRCh37	9	135781141	135781141	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	91	673	0	ENST00000298552.3:c.1824del	p.Phe608LeufsTer21	p.F608Lfs*21	ENST00000298552	NM_001162426.1	608	ttT/tt																																																																														
ABL1	0	MSKCC	GRCh37	9	133759443	133759443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	39	791	1	ENST00000318560.5:c.1766G>A	p.Arg589His	p.R589H	ENST00000318560	NM_005157.4	589	cGc/cAc																																																																														
POLE	0	MSKCC	GRCh37	12	133226412	133226412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200114024		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	112	712	0	ENST00000320574.5:c.3646G>A	p.Gly1216Ser	p.G1216S	ENST00000320574	NM_006231.2	1216	Ggc/Agc																																																																														
TSC1	0	MSKCC	GRCh37	9	135800999	135800999	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	76	619	0	ENST00000298552.3:c.338del	p.Leu113CysfsTer5	p.L113Cfs*5	ENST00000298552	NM_001162426.1	113	tTg/tg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	127	894	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
SPEN	0	MSKCC	GRCh37	1	16258943	16258944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	52	1125	0	ENST00000375759.3:c.6215dup	p.Asn2072LysfsTer51	p.N2072Kfs*51	ENST00000375759	NM_015001.2	2070	gaa/gAaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097792	27097792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	29	558	0	ENST00000324856.7:c.3381G>T	p.Gln1127His	p.Q1127H	ENST00000324856	NM_006015.4	1127	caG/caT																																																																														
MPL	0	MSKCC	GRCh37	1	43803799	43803799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	41	820	0	ENST00000372470.3:c.112del	p.Leu38Ter	p.L38*	ENST00000372470	NM_005373.2	37	Ccc/cc																																																																														
NEGR1	0	MSKCC	GRCh37	1	72076724	72076724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	79	640	1	ENST00000357731.5:c.773A>G	p.Tyr258Cys	p.Y258C	ENST00000357731	NM_173808.2	258	tAc/tGc																																																																														
HIST2H3D	0	MSKCC	GRCh37	1	149784842	149784842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	32	258	0	ENST00000331491.1:c.395G>A	p.Arg132His	p.R132H	ENST00000331491	NM_001123375.2	132	cGc/cAc																																																																														
ATM	0	MSKCC	GRCh37	11	108205836	108205836	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	64	511	0	ENST00000278616.4:c.8151G>T	p.Lys2717Asn	p.K2717N	ENST00000278616	NM_000051.3	2717	aaG/aaT																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50492779	50492779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	191	715	0	ENST00000394963.4:c.1544C>T	p.Thr515Ile	p.T515I	ENST00000394963	NM_003076.4	515	aCa/aTa																																																																														
PTPN11	0	MSKCC	GRCh37	12	112924295	112924295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	231	852	0	ENST00000351677.2:c.1241C>T	p.Thr414Met	p.T414M	ENST00000351677	NM_002834.3	414	aCg/aTg																																																																														
TBX3	0	MSKCC	GRCh37	12	115120918	115120918	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	144	449	0	ENST00000257566.3:c.88A>G	p.Met30Val	p.M30V	ENST00000257566	NM_016569.3	30	Atg/Gtg																																																																														
IRS2	0	MSKCC	GRCh37	13	110436761	110436761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	68	857	0	ENST00000375856.3:c.1640G>T	p.Arg547Met	p.R547M	ENST00000375856	NM_003749.2	547	aGg/aTg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30132924	30132924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	25	670	0	ENST00000331968.5:c.677C>T	p.Ala226Val	p.A226V	ENST00000331968	NM_002742.2	226	gCc/gTc																																																																														
AXIN1	0	MSKCC	GRCh37	16	396146	396146	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	30	496	0	ENST00000262320.3:c.878+2T>C		p.X293_splice	ENST00000262320	NM_003502.3	293																																																																															
ERCC4	0	MSKCC	GRCh37	16	14015916	14015916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	18	414	0	ENST00000311895.7:c.236A>G	p.Glu79Gly	p.E79G	ENST00000311895	NM_005236.2	79	gAa/gGa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822385	72822385	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	144	1015	0	ENST00000268489.5:c.9790G>C	p.Ala3264Pro	p.A3264P	ENST00000268489	NM_006885.3	3264	Gcc/Ccc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348443	89348443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	124	865	0	ENST00000301030.4:c.4507G>A	p.Ala1503Thr	p.A1503T	ENST00000301030	NM_001256183.1	1503	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7578279	7578280	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	116	699	0	ENST00000269305.4:c.569_570insA	p.Pro191SerfsTer18	p.P191Sfs*18	ENST00000269305	NM_001126112.2	190	cct/ccAt																																																																														
RNF43	0	MSKCC	GRCh37	17	56492890	56492906	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCCAGGGCCAGAGG	GCAGCCAGGGCCAGAGG	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	47	373	0	ENST00000407977.2:c.33_49del	p.Leu12AspfsTer22	p.L12Dfs*22	ENST00000407977		11	gcCCTCTGGCCCTGGCTGCtg/gctg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63534372	63534377	+	inframe_deletion	In_Frame_Del	DEL	CAGCTT	CAGCTT	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	129	881	0	ENST00000307078.5:c.1144_1149del	p.Lys382_Leu383del	p.K382_L383del	ENST00000307078	NM_004655.3	382	AAGCTG/-																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627583	14627583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	101	518	1	ENST00000254322.2:c.487C>A	p.Pro163Thr	p.P163T	ENST00000254322	NM_006145.1	163	Cca/Aca																																																																														
BRD4	0	MSKCC	GRCh37	19	15349561	15349561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	158	939	3	ENST00000263377.2:c.4013G>A	p.Arg1338Gln	p.R1338Q	ENST00000263377	NM_058243.2	1338	cGg/cAg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45871986	45871986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	120	736	0	ENST00000391945.4:c.262C>T	p.Arg88Ter	p.R88*	ENST00000391945	NM_000400.3	88	Cga/Tga																																																																														
CASP8	0	MSKCC	GRCh37	2	202149727	202149727	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	46	699	0	ENST00000358485.4:c.1168G>C	p.Ala390Pro	p.A390P	ENST00000358485	NM_001080125.1	390	Gcc/Ccc																																																																														
IRS1	0	MSKCC	GRCh37	2	227659763	227659763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	33	532	0	ENST00000305123.5:c.3692G>A	p.Ser1231Asn	p.S1231N	ENST00000305123	NM_005544.2	1231	aGc/aAc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242795003	242795003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	167	1020	4	ENST00000334409.5:c.206G>A	p.Arg69His	p.R69H	ENST00000334409	NM_005018.2	69	cGc/cAc																																																																														
EP300	0	MSKCC	GRCh37	22	41564491	41564491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	38	502	0	ENST00000263253.7:c.3913C>T	p.Arg1305Cys	p.R1305C	ENST00000263253	NM_001429.3	1305	Cgt/Tgt																																																																														
PRKCI	0	MSKCC	GRCh37	3	169985715	169985715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	96	558	0	ENST00000295797.4:c.377G>A	p.Arg126His	p.R126H	ENST00000295797	NM_002740.5	126	cGt/cAt																																																																														
SOX2	0	MSKCC	GRCh37	3	181430993	181430993	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	116	821	1	ENST00000325404.1:c.845A>G	p.Glu282Gly	p.E282G	ENST00000325404	NM_003106.3	282	gAg/gGg																																																																														
FAT1	0	MSKCC	GRCh37	4	187541018	187541018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	67	426	0	ENST00000441802.2:c.6722C>A	p.Pro2241His	p.P2241H	ENST00000441802	NM_005245.3	2241	cCt/cAt																																																																														
RASA1	0	MSKCC	GRCh37	5	86649045	86649046	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	51	499	0	ENST00000274376.6:c.1327dup	p.Met443AsnfsTer10	p.M443Nfs*10	ENST00000274376	NM_002890.2	442	cca/ccAa																																																																														
FLT4	0	MSKCC	GRCh37	5	180043364	180043365	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	79	603	0	ENST00000261937.6:c.3219+2_3219+3del		p.X1073_splice	ENST00000261937	NM_182925.4	1073																																																																															
HIST1H3J	0	MSKCC	GRCh37	6	27858216	27858216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	119	613	0	ENST00000359303.2:c.355A>G	p.Thr119Ala	p.T119A	ENST00000359303	NM_003535.2	119	Act/Gct																																																																														
MDC1	0	MSKCC	GRCh37	6	30675718	30675718	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	142	1048	0	ENST00000376406.3:c.2638del	p.Ser880ValfsTer11	p.S880Vfs*11	ENST00000376406	NM_014641.2	880	Agt/gt																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324192	31324192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	120	371	0	ENST00000412585.2:c.371G>A	p.Gly124Asp	p.G124D	ENST00000412585	NM_005514.6	124	gGc/gAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391260	139391260	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	70	975	0	ENST00000277541.6:c.6931C>A	p.Leu2311Met	p.L2311M	ENST00000277541	NM_017617.3	2311	Ctg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	120	600	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151917611	151917611	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	149	728	0	ENST00000262189.6:c.3709C>T	p.Arg1237Ter	p.R1237*	ENST00000262189	NM_170606.2	1237	Cga/Tga																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223482	53223492	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCGCGGCCT	TGGCGCGGCCT	-			P-0019848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	109	666	0	ENST00000375401.3:c.3867_3877del	p.Gly1290AlafsTer6	p.G1290Afs*6	ENST00000375401	NM_004187.3	1289	caAGGCCGCGCCAgg/cagg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0019850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	163	295	0				ENST00000310581	NM_198253.2																																																																																
RB1	0	MSKCC	GRCh37	13	49039133	49039133	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0019850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	74	292	0	ENST00000267163.4:c.2212-1G>C		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																															
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	639	716	0	ENST00000269305.4:c.527G>C	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	tGc/tCc																																																																														
RB1	0	MSKCC	GRCh37	13	49039164	49039164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	142	492	0	ENST00000267163.4:c.2242G>C	p.Glu748Gln	p.E748Q	ENST00000267163	NM_000321.2	748	Gag/Cag																																																																														
SETD2	0	MSKCC	GRCh37	3	47129629	47129629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	175	665	0	ENST00000409792.3:c.5251A>G	p.Lys1751Glu	p.K1751E	ENST00000409792	NM_014159.6	1751	Aaa/Gaa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87342574	87342574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	78	490	0	ENST00000277120.3:c.859C>A	p.Pro287Thr	p.P287T	ENST00000277120		287	Cca/Aca																																																																														
ARID2	0	MSKCC	GRCh37	12	46244642	46244642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	125	817	0	ENST00000334344.6:c.2736G>T	p.Gln912His	p.Q912H	ENST00000334344	NM_152641.2	912	caG/caT																																																																														
TP53	0	MSKCC	GRCh37	17	7578285	7578288	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAGA	CAGA	AC			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	276	722	2	ENST00000269305.4:c.561_564delinsGT	p.Leu188CysfsTer20	p.L188Cfs*20	ENST00000269305	NM_001126112.2	187	ggTCTG/ggGT																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15296221	15296221	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	96	953	0	ENST00000263388.2:c.2145-2A>G		p.X715_splice	ENST00000263388	NM_000435.2	715																																																																															
EPHB1	0	MSKCC	GRCh37	3	134880975	134880975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	71	628	1	ENST00000398015.3:c.1538G>T	p.Gly513Val	p.G513V	ENST00000398015	NM_004441.4	513	gGc/gTc																																																																														
BCL6	0	MSKCC	GRCh37	3	187444545	187444545	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	74	747	2	ENST00000232014.4:c.1682T>A	p.Leu561His	p.L561H	ENST00000232014	NM_001130845.1	561	cTc/cAc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652153	36652153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	113	736	0	ENST00000244741.5:c.275G>T	p.Gly92Val	p.G92V	ENST00000244741	NM_000389.4	92	gGc/gTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8404599	8404599	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	46	436	0	ENST00000356435.5:c.4148A>C	p.Lys1383Thr	p.K1383T	ENST00000356435		1383	aAg/aCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0019855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	223	477	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424437	49424438	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AG			P-0019855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	322	706	4	ENST00000301067.7:c.13785_13786delinsCT	p.Gly4596Ter	p.G4596*	ENST00000301067	NM_003482.3	4595	ttTGga/ttCTga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427251	49427268	+	inframe_deletion	In_Frame_Del	DEL	TGCTGCTGCTGCTGTTGC	TGCTGCTGCTGCTGTTGC	-			P-0019855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	35	532	0	ENST00000301067.7:c.11220_11237del	p.Gln3740_Gln3745del	p.Q3740_Q3745del	ENST00000301067	NM_003482.3	3740	caGCAACAGCAGCAGCAGCAc/cac																																																																														
TP53	0	MSKCC	GRCh37	17	7579368	7579368	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	369	890	0	ENST00000269305.4:c.319del	p.Tyr107ThrfsTer16	p.Y107Tfs*16	ENST00000269305	NM_001126112.2	107	Tac/ac																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984843	11984843	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs77267737		P-0019855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	186	524	0	ENST00000353533.5:c.389T>G	p.Val130Gly	p.V130G	ENST00000353533	NM_003010.3	130	gTt/gGt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021529	31021529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	241	609	0	ENST00000375687.4:c.1528C>A	p.Leu510Met	p.L510M	ENST00000375687	NM_015338.5	510	Ctg/Atg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0019857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	242	775	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PAK7	0	MSKCC	GRCh37	20	9560982	9560982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	24	468	1	ENST00000353224.5:c.800G>T	p.Arg267Met	p.R267M	ENST00000353224	NM_177990.2	267	aGg/aTg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143067131	143067131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	127	574	0	ENST00000262992.4:c.1582G>A	p.Val528Met	p.V528M	ENST00000262992	NM_001101669.1	528	Gtg/Atg																																																																														
ELF3	0	MSKCC	GRCh37	1	201983039	201983040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	358	891	0	ENST00000359651.3:c.890dup	p.Asn297LysfsTer4	p.N297Kfs*4	ENST00000359651		296	-/A																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	78	689	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0019861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	116	678	1				ENST00000310581	NM_198253.2																																																																																
PIK3CB	0	MSKCC	GRCh37	3	138374244	138374244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	38	626	0	ENST00000289153.2:c.3200A>T	p.Asp1067Val	p.D1067V	ENST00000289153	NM_006219.2	1067	gAc/gTc																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123499615	123499615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	52	821	1	ENST00000371139.4:c.142C>T	p.His48Tyr	p.H48Y	ENST00000371139	NM_001114937.2	48	Cac/Tac																																																																														
STAT3	0	MSKCC	GRCh37	17	40476813	40476813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	52	799	2	ENST00000264657.5:c.1516G>A	p.Glu506Lys	p.E506K	ENST00000264657	NM_139276.2	506	Gag/Aag																																																																														
ARID2	0	MSKCC	GRCh37	12	46287264	46287264	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	42	669	2	ENST00000334344.6:c.5209C>A	p.Pro1737Thr	p.P1737T	ENST00000334344	NM_152641.2	1737	Ccc/Acc																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675119	40675119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	72	966	3	ENST00000249776.8:c.83C>T	p.Pro28Leu	p.P28L	ENST00000249776	NM_033286.3	28	cCg/cTg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902604	1902604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	73	884	0	ENST00000382891.5:c.223C>T	p.Pro75Ser	p.P75S	ENST00000382891	NM_133335.3	75	Cca/Tca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874091	151874091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	92	779	0	ENST00000262189.6:c.8447C>T	p.Ser2816Phe	p.S2816F	ENST00000262189	NM_170606.2	2816	tCc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0019863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	402	745	2	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717713	89717713	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	353	625	0	ENST00000371953.3:c.738del	p.Leu247TyrfsTer9	p.L247Yfs*9	ENST00000371953	NM_000314.4	246	ccG/cc																																																																														
CSDE1	0	MSKCC	GRCh37	1	115262325	115262325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	117	681	0	ENST00000438362.2:c.2229G>T	p.Lys743Asn	p.K743N	ENST00000438362	NM_001242891.1	743	aaG/aaT																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120465304	120465304	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	48	541	0	ENST00000256646.2:c.4957C>G	p.His1653Asp	p.H1653D	ENST00000256646	NM_024408.3	1653	Cac/Gac																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469123	25469134	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCTCAGGTTC	TGCCTCAGGTTC	GTAGG			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	120	780	3	ENST00000264709.3:c.1324_1335delinsCCTAC	p.Glu442ProfsTer207	p.E442Pfs*207	ENST00000264709	NM_175629.2	442	GAACCTGAGGCA/CCTAC																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469174	25469174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	38	590	0	ENST00000264709.3:c.1284G>C	p.Glu428Asp	p.E428D	ENST00000264709	NM_175629.2	428	gaG/gaC																																																																														
SF3B1	0	MSKCC	GRCh37	2	198270051	198270051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	77	643	0	ENST00000335508.6:c.1385G>T	p.Gly462Val	p.G462V	ENST00000335508	NM_012433.2	462	gGa/gTa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40748578	40748578	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	48	521	0	ENST00000373198.4:c.2938C>G	p.Gln980Glu	p.Q980E	ENST00000373198	NM_133170.3	980	Caa/Gaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873943	151873948	+	frameshift_variant	Frame_Shift_Del	DEL	TCCATC	TCCATC	CCATT			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	120	658	4	ENST00000262189.6:c.8590_8595delinsAATGG	p.Asp2864AsnfsTer42	p.D2864Nfs*42	ENST00000262189	NM_170606.2	2864	GATGGA/AATGG																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964486	70964486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	121	777	0	ENST00000276594.2:c.1542G>T	p.Glu514Asp	p.E514D	ENST00000276594	NM_024504.3	514	gaG/gaT																																																																														
RECQL4	0	MSKCC	GRCh37	8	145742462	145742462	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	264	824	0	ENST00000428558.2:c.326T>A	p.Leu109His	p.L109H	ENST00000428558	NM_004260.3	109	cTc/cAc																																																																														
JAK2	0	MSKCC	GRCh37	9	5022183	5022183	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	59	709	0	ENST00000381652.3:c.196G>C	p.Glu66Gln	p.E66Q	ENST00000381652	NM_004972.3	66	Gaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	52	682	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	22	689	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0019867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	15	218	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0019867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	15	218	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	217	709	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
RB1	0	MSKCC	GRCh37	13	48921980	48921980	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019868-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	88	553	0	ENST00000267163.4:c.520T>G	p.Leu174Val	p.L174V	ENST00000267163	NM_000321.2	174	Ttg/Gtg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	191	681	0	ENST00000342988.3:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000342988	NM_005359.5	352	gGa/gAa																																																																														
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	38	397	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	248	624	4	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
FGFR2	0	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	152	731	2	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag																																																																														
FGFR2	0	MSKCC	GRCh37	10	123247527	123247527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	168	789	1	ENST00000358487.5:c.1964A>G	p.Asp655Gly	p.D655G	ENST00000358487	NM_000141.4	655	gAc/gGc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120373	70120374	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	791	1297	3	ENST00000245479.2:c.1376_1377dupGC	p.Thr460AlafsTer11	p.T460Afs*11	ENST00000245479	NM_000346.3	459	ggc/gGCgc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098411	11098411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	255	875	1	ENST00000344626.4:c.929G>T	p.Arg310Leu	p.R310L	ENST00000344626	NM_003072.3	310	cGc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7579515	7579515	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	CC			P-0019869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	457	918	6	ENST00000269305.4:c.172delinsGG	p.Pro58GlyfsTer5	p.P58Gfs*5	ENST00000269305	NM_001126112.2	58	Cca/GGca																																																																														
FOXP1	0	MSKCC	GRCh37	3	71096196	71096196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	101	467	0	ENST00000318789.4:c.561G>T	p.Gln187His	p.Q187H	ENST00000318789	NM_032682.5	187	caG/caT																																																																														
E2F3	0	MSKCC	GRCh37	6	20402719	20402719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	137	583	0	ENST00000346618.3:c.256C>T	p.Pro86Ser	p.P86S	ENST00000346618	NM_001949.4	86	Ccc/Tcc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066571	94066571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	116	683	0	ENST00000369303.4:c.1188G>T	p.Glu396Asp	p.E396D	ENST00000369303	NM_004440.3	396	gaG/gaT																																																																														
ATRX	0	MSKCC	GRCh37	X	76920223	76920224	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	149	727	0	ENST00000373344.5:c.3853dup	p.Ser1285PhefsTer3	p.S1285Ffs*3	ENST00000373344	NM_000489.3	1285	tcc/tTcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	26	698	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	73	1046	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
ETV1	0	MSKCC	GRCh37	7	13946174	13946174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	50	866	3	ENST00000405192.2:c.922C>T	p.Arg308Trp	p.R308W	ENST00000405192	NM_001163147.1	308	Cgg/Tgg																																																																														
TCF3	0	MSKCC	GRCh37	19	1612221	1612221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	33	543	0	ENST00000344749.5:c.1798G>C	p.Glu600Gln	p.E600Q	ENST00000344749	NM_001136139.2	600	Gag/Cag																																																																														
TCF3	0	MSKCC	GRCh37	19	1612227	1612227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	35	566	0	ENST00000344749.5:c.1792G>A	p.Gly598Arg	p.G598R	ENST00000344749	NM_001136139.2	598	Ggg/Agg																																																																														
TCF3	0	MSKCC	GRCh37	19	1612297	1612297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	76	1001	0	ENST00000344749.5:c.1722G>C	p.Gln574His	p.Q574H	ENST00000344749	NM_001136139.2	574	caG/caC																																																																														
TCF3	0	MSKCC	GRCh37	19	1612356	1612356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	81	990	0	ENST00000344749.5:c.1663G>C	p.Glu555Gln	p.E555Q	ENST00000344749	NM_001136139.2	555	Gag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0019876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	220	350	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0019876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	37	567	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0019876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	165	852	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
DIS3	0	MSKCC	GRCh37	13	73346016	73346016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	55	593	1	ENST00000377767.4:c.1522G>T	p.Asp508Tyr	p.D508Y	ENST00000377767	NM_014953.3	508	Gat/Tat																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39570518	39570518	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0019876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	24	365	0	ENST00000262039.4:c.714+1del		p.K238fs	ENST00000262039	NM_002647.2	238	aaG/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0019878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	71	530	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942171	71942171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	138	1025	2	ENST00000298229.2:c.1435C>T	p.Arg479Cys	p.R479C	ENST00000298229	NM_001567.3	479	Cgc/Tgc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16075163	16075163	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	137	507	0	ENST00000268712.3:c.389T>A	p.Val130Glu	p.V130E	ENST00000268712	NM_006311.3	130	gTg/gAg																																																																														
ESR1	0	MSKCC	GRCh37	6	152419871	152419897	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGGCATGGAGCATCTGTACAGCATG	AAAGGCATGGAGCATCTGTACAGCATG	CATGCTGTAC			P-0019878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	111	781	4	ENST00000206249.3:c.1558_1584delinsCATGCTGTAC	p.Lys520HisfsTer13	p.K520Hfs*13	ENST00000206249	NM_000125.3	520	AAAGGCATGGAGCATCTGTACAGCATG/CATGCTGTAC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	26	623	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	24	745	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	14	551	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	14	705	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	41	895	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	62	704	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741598	17741598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	10	173	1	ENST00000250003.3:c.269C>T	p.Ala90Val	p.A90V	ENST00000250003	NM_002478.4	90	gCg/gTg																																																																														
RB1	0	MSKCC	GRCh37	13	48937085	48937085	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	36	477	0	ENST00000267163.4:c.853A>G	p.Ile285Val	p.I285V	ENST00000267163	NM_000321.2	285	Ata/Gta																																																																														
PTPRS	0	MSKCC	GRCh37	19	5211779	5211779	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	39	751	2	ENST00000357368.4:c.5056C>T	p.Arg1686Trp	p.R1686W	ENST00000357368	NM_002850.3	1686	Cgg/Tgg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15295792	15295792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	33	1310	1	ENST00000263388.2:c.2335C>T	p.Pro779Ser	p.P779S	ENST00000263388	NM_000435.2	779	Ccc/Tcc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324545	31324545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	49	824	1	ENST00000412585.2:c.263C>T	p.Thr88Ile	p.T88I	ENST00000412585	NM_005514.6	88	aCa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	426	925	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696461	47696461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	172	644	0	ENST00000347630.2:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000347630	NM_001007230.1	121	cGg/cAg																																																																														
RAD54L	0	MSKCC	GRCh37	1	46740262	46740262	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	263	624	0	ENST00000371975.4:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000371975	NM_003579.3	581	aAt/aGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	152007110	152007110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	121	875	0	ENST00000262189.6:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000262189	NM_170606.2	264	Cag/Tag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111451	8111452	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	66	742	0	ENST00000346208.3:c.938dup	p.Gly314ArgfsTer38	p.G314Rfs*38	ENST00000346208		313	gca/gCca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0019897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	51	812	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
RBM10	0	MSKCC	GRCh37	X	47041582	47041582	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	80	836	2	ENST00000329236.7:c.1573C>T	p.Gln525Ter	p.Q525*	ENST00000329236	NM_001204466.1	525	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	58	741	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	103	624	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	32	358	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
SOS1	0	MSKCC	GRCh37	2	39216452	39216452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	48	675	0	ENST00000402219.2:c.3350A>G	p.Asn1117Ser	p.N1117S	ENST00000402219	NM_005633.3	1117	aAt/aGt																																																																														
ROS1	0	MSKCC	GRCh37	6	117631362	117631362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150262256		P-0019898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	39	529	4	ENST00000368508.3:c.6316G>A	p.Ala2106Thr	p.A2106T	ENST00000368508	NM_002944.2	2106	Gcc/Acc																																																																														
PAK1	0	MSKCC	GRCh37	11	77060330	77060331	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CACTGAA			P-0019900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	52	273	0	ENST00000356341.3:c.837-5_838dup	p.Ala280ValfsTer22	p.A280Vfs*22	ENST00000356341	NM_002576.4	280	gct/gTTCAGTGct																																																																														
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	335	745	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589610	67589612	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0019900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	199	473	0	ENST00000274335.5:c.1376_1378delAAA	p.Lys459del	p.K459del	ENST00000274335		458	gAAAaa/gaa																																																																														
APC	0	MSKCC	GRCh37	5	112174182	112174182	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0019900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	220	470	0	ENST00000257430.4:c.2891T>G	p.Leu964Ter	p.L964*	ENST00000257430	NM_000038.5	964	tTa/tGa																																																																														
APC	0	MSKCC	GRCh37	5	112175754	112175760	+	frameshift_variant	Frame_Shift_Del	DEL	TATTACA	TATTACA	-			P-0019900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	59	345	0	ENST00000257430.4:c.4464_4470del	p.Leu1488PhefsTer17	p.L1488Ffs*17	ENST00000257430	NM_000038.5	1488	tTATTACAt/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	63	597	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CBFB	0	MSKCC	GRCh37	16	67070644	67070645	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0019903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	21	259	0	ENST00000412916.2:c.268_269insCT	p.Arg90ThrfsTer9	p.R90Tfs*9	ENST00000412916		90	aga/aCTga																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55140767	55140767	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	69	646	0	ENST00000257290.5:c.1628T>A	p.Ile543Asn	p.I543N	ENST00000257290	NM_006206.4	543	aTt/aAt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177385	56177403	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTCTTTCAGGTATAAG	TTTTTCTTTCAGGTATAAG	-			P-0019903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	18	280	0	ENST00000399503.3:c.2370-12_2376del		p.X790_splice	ENST00000399503	NM_005921.1	790																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	262	537	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	170	733	1	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112138	115112138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	261	833	0	ENST00000257566.3:c.1602G>T	p.Met534Ile	p.M534I	ENST00000257566	NM_016569.3	534	atG/atT																																																																														
DIS3	0	MSKCC	GRCh37	13	73345042	73345042	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	148	548	0	ENST00000377767.4:c.1755G>T	p.Lys585Asn	p.K585N	ENST00000377767	NM_014953.3	585	aaG/aaT																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12013742	12013742	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	105	489	0	ENST00000353533.5:c.684A>T	p.Arg228Ser	p.R228S	ENST00000353533	NM_003010.3	228	agA/agT																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306761	41306761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	187	458	0	ENST00000373198.4:c.898G>T	p.Val300Leu	p.V300L	ENST00000373198	NM_133170.3	300	Gtg/Ttg																																																																														
FLT1	0	MSKCC	GRCh37	13	29005391	29005391	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	133	465	0	ENST00000282397.4:c.870C>A	p.Asn290Lys	p.N290K	ENST00000282397	NM_002019.4	290	aaC/aaA																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937847	36937847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	172	912	1	ENST00000361632.4:c.989C>A	p.Thr330Asn	p.T330N	ENST00000361632		330	aCc/aAc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462209	120462209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	110	455	2	ENST00000256646.2:c.5507C>A	p.Ser1836Tyr	p.S1836Y	ENST00000256646	NM_024408.3	1836	tCt/tAt																																																																														
RET	0	MSKCC	GRCh37	10	43610170	43610170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	211	769	0	ENST00000355710.3:c.2122G>T	p.Ala708Ser	p.A708S	ENST00000355710	NM_020975.4	708	Gcc/Tcc																																																																														
TET1	0	MSKCC	GRCh37	10	70405593	70405593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	223	690	0	ENST00000373644.4:c.3107A>G	p.His1036Arg	p.H1036R	ENST00000373644	NM_030625.2	1036	cAt/cGt																																																																														
LATS2	0	MSKCC	GRCh37	13	21562433	21562433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	132	505	0	ENST00000382592.4:c.1486G>C	p.Gly496Arg	p.G496R	ENST00000382592	NM_014572.2	496	Ggc/Cgc																																																																														
FLT3	0	MSKCC	GRCh37	13	28588675	28588675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	108	487	0	ENST00000241453.7:c.2773T>C	p.Cys925Arg	p.C925R	ENST00000241453	NM_004119.2	925	Tgc/Cgc																																																																														
FLT1	0	MSKCC	GRCh37	13	28893589	28893590	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	142	579	3	ENST00000282397.4:c.3256_3257delinsTT	p.Gly1086Leu	p.G1086L	ENST00000282397	NM_002019.4	1086	GGa/TTa																																																																														
RB1	0	MSKCC	GRCh37	13	48919214	48919214	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	84	199	0	ENST00000267163.4:c.381-2A>T		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																															
DICER1	0	MSKCC	GRCh37	14	95599663	95599663	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	58	389	0	ENST00000343455.3:c.133A>T	p.Arg45Ter	p.R45*	ENST00000343455	NM_177438.2	45	Aga/Tga																																																																														
AXIN1	0	MSKCC	GRCh37	16	339451	339451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	196	694	1	ENST00000262320.3:c.2451G>T	p.Lys817Asn	p.K817N	ENST00000262320	NM_003502.3	817	aaG/aaT																																																																														
CYLD	0	MSKCC	GRCh37	16	50813941	50813941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	163	587	0	ENST00000398568.2:c.1495G>T	p.Ala499Ser	p.A499S	ENST00000398568	NM_001042412.1	499	Gct/Tct																																																																														
NUP93	0	MSKCC	GRCh37	16	56867193	56867193	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	76	606	0	ENST00000308159.5:c.1412A>C	p.Gln471Pro	p.Q471P	ENST00000308159	NM_014669.4	471	cAg/cCg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991404	72991404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	75	773	1	ENST00000268489.5:c.2641G>T	p.Ala881Ser	p.A881S	ENST00000268489	NM_006885.3	881	Gcc/Tcc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991952	72991952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	166	579	0	ENST00000268489.5:c.2093G>T	p.Gly698Val	p.G698V	ENST00000268489	NM_006885.3	698	gGg/gTg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41251843	41251843	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	162	713	1	ENST00000357654.3:c.496A>T	p.Arg166Trp	p.R166W	ENST00000357654	NM_007294.3	166	Agg/Tgg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5215326	5215326	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064298		P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	62	512	0	ENST00000357368.4:c.4292C>T	p.Ser1431Phe	p.S1431F	ENST00000357368	NM_002850.3	1431	tCc/tTc																																																																														
JAK3	0	MSKCC	GRCh37	19	17950390	17950390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	212	801	0	ENST00000458235.1:c.1337C>A	p.Pro446His	p.P446H	ENST00000458235	NM_000215.3	446	cCc/cAc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46268766	46268766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	59	596	1	ENST00000371998.3:c.3051G>A	p.Met1017Ile	p.M1017I	ENST00000371998		1017	atG/atA																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42839745	42839745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	59	671	0	ENST00000398585.3:c.1494G>T	p.Trp498Cys	p.W498C	ENST00000398585	NM_001135099.1	498	tgG/tgT																																																																														
PPARG	0	MSKCC	GRCh37	3	12434112	12434112	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	55	356	0	ENST00000287820.6:c.481-1G>T		p.X161_splice	ENST00000287820	NM_015869.4	161																																																																															
EPHB1	0	MSKCC	GRCh37	3	134670881	134670881	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	81	300	0	ENST00000398015.3:c.792C>G	p.Ser264Arg	p.S264R	ENST00000398015	NM_004441.4	264	agC/agG																																																																														
EPHB1	0	MSKCC	GRCh37	3	134825295	134825295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	51	341	0	ENST00000398015.3:c.811C>A	p.Pro271Thr	p.P271T	ENST00000398015	NM_004441.4	271	Cct/Act																																																																														
ATR	0	MSKCC	GRCh37	3	142281604	142281604	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	186	652	0	ENST00000350721.4:c.640A>G	p.Thr214Ala	p.T214A	ENST00000350721	NM_001184.3	214	Act/Gct																																																																														
PRKCI	0	MSKCC	GRCh37	3	170011257	170011257	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	79	710	0	ENST00000295797.4:c.1378G>C	p.Asp460His	p.D460H	ENST00000295797	NM_002740.5	460	Gat/Cat																																																																														
WHSC1	0	MSKCC	GRCh37	4	1957012	1957012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	166	604	0	ENST00000382891.5:c.2463G>T	p.Lys821Asn	p.K821N	ENST00000382891	NM_133335.3	821	aaG/aaT																																																																														
FAT1	0	MSKCC	GRCh37	4	187558046	187558046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	38	286	0	ENST00000441802.2:c.3665G>T	p.Ser1222Ile	p.S1222I	ENST00000441802	NM_005245.3	1222	aGt/aTt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31521267	31521267	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	175	649	0	ENST00000344624.3:c.910G>T	p.Glu304Ter	p.E304*	ENST00000344624		304	Gaa/Taa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67576527	67576527	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	122	468	0	ENST00000274335.5:c.806G>T	p.Ser269Ile	p.S269I	ENST00000274335		269	aGc/aTc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449444	149449444	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	125	411	1	ENST00000286301.3:c.1502T>A	p.Ile501Asn	p.I501N	ENST00000286301	NM_005211.3	501	aTc/aAc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169917	32169917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	243	818	3	ENST00000375023.3:c.3691C>A	p.Pro1231Thr	p.P1231T	ENST00000375023	NM_004557.3	1231	Cca/Aca																																																																														
INHBA	0	MSKCC	GRCh37	7	41729832	41729832	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	82	362	1	ENST00000242208.4:c.697C>A	p.Gln233Lys	p.Q233K	ENST00000242208	NM_002192.2	233	Cag/Aag																																																																														
HGF	0	MSKCC	GRCh37	7	81350081	81350081	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	176	446	0	ENST00000222390.5:c.1251G>T	p.Lys417Asn	p.K417N	ENST00000222390	NM_000601.4	417	aaG/aaT																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106524643	106524643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	111	370	0	ENST00000359195.3:c.2804A>G	p.Tyr935Cys	p.Y935C	ENST00000359195	NM_002649.2	935	tAc/tGc																																																																														
MET	0	MSKCC	GRCh37	7	116339673	116339673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	138	386	1	ENST00000397752.3:c.535G>T	p.Ala179Ser	p.A179S	ENST00000397752	NM_000245.2	179	Gcc/Tcc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879121	151879121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	249	560	0	ENST00000262189.6:c.5824A>T	p.Thr1942Ser	p.T1942S	ENST00000262189	NM_170606.2	1942	Aca/Tca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8507318	8507318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	39	402	0	ENST00000356435.5:c.1660G>T	p.Gly554Trp	p.G554W	ENST00000356435		554	Ggg/Tgg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636727	8636727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	26	384	0	ENST00000356435.5:c.182G>T	p.Gly61Val	p.G61V	ENST00000356435		61	gGa/gTa																																																																														
PTCH1	0	MSKCC	GRCh37	9	98240450	98240450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	58	410	0	ENST00000331920.6:c.1234G>T	p.Ala412Ser	p.A412S	ENST00000331920	NM_000264.3	412	Gca/Tca																																																																														
AR	0	MSKCC	GRCh37	X	66765380	66765380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	98	676	1	ENST00000374690.3:c.392G>T	p.Cys131Phe	p.C131F	ENST00000374690	NM_000044.3	131	tGc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	16	667	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	27	841	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDH1	0	MSKCC	GRCh37	16	68855966	68855967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	114	504	0	ENST00000261769.5:c.1779dupC	p.Ile594HisfsTer11	p.I594Hfs*11	ENST00000261769	NM_004360.3	592	gcc/gCcc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272204	15272219	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGGGCCCCTGCGG	CCCGGGGCCCCTGCGG	-			P-0019907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	95	461	0	ENST00000263388.2:c.6220_6235del	p.Pro2074GlyfsTer6	p.P2074Gfs*6	ENST00000263388	NM_000435.2	2074	CCGCAGGGGCCCCGGGgg/gg																																																																														
CARD11	0	MSKCC	GRCh37	7	2952980	2952980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	92	498	3	ENST00000396946.4:c.2960C>T	p.Thr987Met	p.T987M	ENST00000396946	NM_032415.4	987	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019914-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	328	1082	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27059194	27059194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019914-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	208	843	1	ENST00000324856.7:c.1831C>T	p.Gln611Ter	p.Q611*	ENST00000324856	NM_006015.4	611	Cag/Tag																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839850	27839850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019914-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			802	255	918	0	ENST00000328488.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000328488	NM_003533.2	82	Gat/Aat																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691929	30691929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019914-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	173	645	1	ENST00000359013.4:c.506A>G	p.Asn169Ser	p.N169S	ENST00000359013	NM_001024847.2	169	aAt/aGt																																																																														
SHQ1	0	MSKCC	GRCh37	3	72866509	72866509	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019914-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	201	501	0	ENST00000325599.8:c.754C>G	p.Gln252Glu	p.Q252E	ENST00000325599	NM_018130.2	252	Cag/Gag																																																																														
MPL	0	MSKCC	GRCh37	1	43805200	43805200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019914-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			971	297	1110	0	ENST00000372470.3:c.650C>A	p.Pro217His	p.P217H	ENST00000372470	NM_005373.2	217	cCc/cAc																																																																														
IRS2	0	MSKCC	GRCh37	13	110408656	110408656	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0019914-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			515	135	438	0	ENST00000375856.3:c.4013-1G>C		p.X1338_splice	ENST00000375856	NM_003749.2	1338																																																																															
NCOR1	0	MSKCC	GRCh37	17	16089999	16089999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0019914-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	91	429	0	ENST00000268712.3:c.111G>C	p.Glu37Asp	p.E37D	ENST00000268712	NM_006311.3	37	gaG/gaC																																																																														
NF1	0	MSKCC	GRCh37	17	29546098	29546098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019914-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			739	207	737	0	ENST00000358273.4:c.1603C>T	p.Gln535Ter	p.Q535*	ENST00000358273	NM_001042492.2	535	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	108	589	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
RHOA	0	MSKCC	GRCh37	3	49405969	49405969	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	97	619	0	ENST00000418115.1:c.169T>G	p.Leu57Val	p.L57V	ENST00000418115	NM_001664.2	57	Ttg/Gtg																																																																														
PAK1	0	MSKCC	GRCh37	11	77047151	77047151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	984	548	0	ENST00000356341.3:c.1393C>T	p.Leu465Phe	p.L465F	ENST00000356341	NM_002576.4	465	Ctc/Ttc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400035	139400035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61751541		P-0019916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	237	643	0	ENST00000277541.6:c.4313G>A	p.Arg1438His	p.R1438H	ENST00000277541	NM_017617.3	1438	cGc/cAc																																																																														
ATM	0	MSKCC	GRCh37	11	108205774	108205774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	17	510	0	ENST00000278616.4:c.8089A>G	p.Asn2697Asp	p.N2697D	ENST00000278616	NM_000051.3	2697	Aat/Gat																																																																														
PRKCI	0	MSKCC	GRCh37	3	169993015	169993015	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0019918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	12	314	0	ENST00000295797.4:c.647-2A>G		p.X216_splice	ENST00000295797	NM_002740.5	216																																																																															
AGO2	0	MSKCC	GRCh37	8	141568614	141568614	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	55	596	0	ENST00000220592.5:c.848A>G	p.Asn283Ser	p.N283S	ENST00000220592	NM_012154.3	283	aAt/aGt																																																																														
ATM	0	MSKCC	GRCh37	11	108173632	108173634	+	frameshift_variant	Frame_Shift_Del	DEL	ATA	ATA	G			P-0019918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	29	473	0	ENST00000278616.4:c.5372_5374delinsG	p.Asp1791GlyfsTer9	p.D1791Gfs*9	ENST00000278616	NM_000051.3	1791	gATAta/gGta																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	244	700	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
INPPL1	0	MSKCC	GRCh37	11	71940241	71940241	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113909227		P-0019919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	199	667	3	ENST00000298229.2:c.626G>A	p.Arg209His	p.R209H	ENST00000298229	NM_001567.3	209	cGt/cAt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212652882	212652882	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0019919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	52	279	0	ENST00000342788.4:c.424A>G	p.Ile142Val	p.I142V	ENST00000342788	NM_005235.2	142	Atc/Gtc																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250755	26250755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	49	291	0	ENST00000446824.2:c.79C>T	p.Arg27Cys	p.R27C	ENST00000446824	NM_021018.2	27	Cgc/Tgc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974785	21974792	+	frameshift_variant	Frame_Shift_Del	DEL	GTCAGCCG	GTCAGCCG	-			P-0019919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	43	208	0	ENST00000304494.5:c.35_42del	p.Ser12LeufsTer29	p.S12Lfs*29	ENST00000304494	NM_000077.4	12	tCGGCTGAC/t																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974785	21974792	+	frameshift_variant	Frame_Shift_Del	DEL	GTCAGCCG	GTCAGCCG	-			P-0019919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	43	208	0	ENST00000304494.5:c.35_42del	p.Ser12LeufsTer29	p.S12Lfs*29	ENST00000304494	NM_000077.4	12	tCGGCTGAC/t																																																																														
RFWD2	0	MSKCC	GRCh37	1	176050393	176050393	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	33	411	0	ENST00000367669.3:c.1172A>T	p.Glu391Val	p.E391V	ENST00000367669	NM_022457.5	391	gAa/gTa																																																																														
KIT	0	MSKCC	GRCh37	4	55593654	55593655	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACAACTTCCTTATGATCACAAATGGGAGTTTC			P-0019921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	46	543	0	ENST00000288135.5:c.1722_1754dup	p.Gln575_Pro585dup	p.Q575_P585dup	ENST00000288135	NM_000222.2	575	aca/aCACAACTTCCTTATGATCACAAATGGGAGTTTCca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	121	471	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7576873	7576873	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	201	601	0	ENST00000269305.4:c.973G>T	p.Gly325Ter	p.G325*	ENST00000269305	NM_001126112.2	325	Gga/Tga																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022883	31022883	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	248	498	3	ENST00000375687.4:c.2368G>T	p.Glu790Ter	p.E790*	ENST00000375687	NM_015338.5	790	Gag/Tag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52598065	52598065	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0019923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	129	382	0	ENST00000394830.3:c.3800+1G>A		p.X1267_splice	ENST00000394830	NM_018313.4	1267																																																																															
APC	0	MSKCC	GRCh37	5	112175891	112175892	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0019923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	35	302	0	ENST00000257430.4:c.4601_4602del	p.Gly1534GlufsTer2	p.G1534Efs*2	ENST00000257430	NM_000038.5	1534	GGg/g																																																																														
AMER1	0	MSKCC	GRCh37	X	63411333	63411333	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	194	626	0	ENST00000330258.3:c.1834G>T	p.Glu612Ter	p.E612*	ENST00000330258	NM_152424.3	612	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	100	556	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0019924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	125	603	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
INPPL1	0	MSKCC	GRCh37	11	71941265	71941265	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144485030		P-0019924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	115	783	0	ENST00000298229.2:c.1040G>A	p.Arg347Gln	p.R347Q	ENST00000298229	NM_001567.3	347	cGg/cAg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	333	831	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
CD276	0	MSKCC	GRCh37	15	73996765	73996765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	84	352	1	ENST00000318443.5:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000318443	NM_001024736.1	441	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7576928	7576938	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TAGGAAAGAGG	TAGGAAAGAGG	-			P-0019927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	334	817	0	ENST00000269305.4:c.920-12_920-2del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
DNMT3A	0	MSKCC	GRCh37	2	25464480	25464481	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	179	814	0	ENST00000264709.3:c.2032_2033insT	p.Gln678LeufsTer35	p.Q678Lfs*35	ENST00000264709	NM_175629.2	678	cag/cTag																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225770	26225770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	111	687	0	ENST00000360408.1:c.388C>T	p.Arg130Cys	p.R130C	ENST00000360408	NM_003532.2	130	Cgc/Tgc																																																																														
FLT3	0	MSKCC	GRCh37	13	28624268	28624268	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	79	878	0	ENST00000241453.7:c.706G>C	p.Glu236Gln	p.E236Q	ENST00000241453	NM_004119.2	236	Gaa/Caa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178679	56178679	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	101	335	0	ENST00000399503.3:c.3652A>T	p.Ile1218Phe	p.I1218F	ENST00000399503	NM_005921.1	1218	Att/Ttt																																																																														
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	264	398	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156845890	156845890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	128	957	0	ENST00000524377.1:c.1520G>A	p.Arg507His	p.R507H	ENST00000524377	NM_002529.3	507	cGc/cAc																																																																														
AR	0	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	38	390	0	ENST00000374690.3:c.2226G>C	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgC																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373322	118373322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	87	680	0	ENST00000534358.1:c.6715C>G	p.Leu2239Val	p.L2239V	ENST00000534358	NM_005933.3	2239	Ctt/Gtt																																																																														
MSH6	0	MSKCC	GRCh37	2	48025771	48025771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	44	345	0	ENST00000234420.5:c.649G>C	p.Asp217His	p.D217H	ENST00000234420	NM_000179.2	217	Gat/Cat																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022311	31022311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	229	582	0	ENST00000375687.4:c.1796C>A	p.Pro599His	p.P599H	ENST00000375687	NM_015338.5	599	cCc/cAc																																																																														
HGF	0	MSKCC	GRCh37	7	81346583	81346602	+	frameshift_variant	Frame_Shift_Del	DEL	GGATTTCCCGTGTAGCACCA	GGATTTCCCGTGTAGCACCA	-			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	172	576	0	ENST00000222390.5:c.1351_1370del	p.Trp451ThrfsTer13	p.W451Tfs*13	ENST00000222390	NM_000601.4	451	TGGTGCTACACGGGAAATCCa/a																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509555	106509555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	171	816	2	ENST00000359195.3:c.1549T>A	p.Ser517Thr	p.S517T	ENST00000359195	NM_002649.2	517	Tcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0019934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	733	1151	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120459167	120459167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	88	772	0	ENST00000256646.2:c.6178C>T	p.Arg2060Cys	p.R2060C	ENST00000256646	NM_024408.3	2060	Cgc/Tgc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17742930	17742930	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	33	792	0	ENST00000250003.3:c.839del	p.Pro280ArgfsTer56	p.P280Rfs*56	ENST00000250003	NM_002478.4	280	Ccg/cg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561258	9561258	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	106	628	0	ENST00000353224.5:c.524T>C	p.Met175Thr	p.M175T	ENST00000353224	NM_177990.2	175	aTg/aCg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739576	145739576	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	42	933	0	ENST00000428558.2:c.1875C>G	p.Cys625Trp	p.C625W	ENST00000428558	NM_004260.3	625	tgC/tgG																																																																														
PPP6C	0	MSKCC	GRCh37	9	127912113	127912113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	102	553	1	ENST00000373547.4:c.757G>T	p.Val253Leu	p.V253L	ENST00000373547	NM_002721.4	253	Gtg/Ttg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	42	756	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	106	851	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc																																																																														
RBM10	0	MSKCC	GRCh37	X	47044839	47044839	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	74	815	0	ENST00000329236.7:c.1933-2A>G		p.X645_splice	ENST00000329236	NM_001204466.1	645																																																																															
FLT4	0	MSKCC	GRCh37	5	180039519	180039519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	46	848	0	ENST00000261937.6:c.3524G>T	p.Gly1175Val	p.G1175V	ENST00000261937	NM_182925.4	1175	gGc/gTc																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612736	228612736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	106	749	1	ENST00000366696.1:c.291C>A	p.Cys97Ter	p.C97*	ENST00000366696	NM_003493.2	97	tgC/tgA																																																																														
MRE11A	0	MSKCC	GRCh37	11	94194173	94194173	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	34	663	0	ENST00000323929.3:c.1255A>G	p.Thr419Ala	p.T419A	ENST00000323929	NM_005591.3	419	Aca/Gca																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934644	9934644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	42	426	0	ENST00000330684.3:c.1511G>A	p.Arg504Gln	p.R504Q	ENST00000330684	NM_001134407.1	504	cGg/cAg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31515587	31515588	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	34	552	1	ENST00000344624.3:c.1031_1032delinsTT	p.Trp344Phe	p.W344F	ENST00000344624		344	tGG/tTT																																																																														
ATRX	0	MSKCC	GRCh37	X	76763855	76763855	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	57	779	2	ENST00000373344.5:c.7453G>T	p.Gly2485Ter	p.G2485*	ENST00000373344	NM_000489.3	2485	Gga/Tga																																																																														
ATRX	0	MSKCC	GRCh37	X	76907777	76907777	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	67	451	1	ENST00000373344.5:c.4384G>T	p.Glu1462Ter	p.E1462*	ENST00000373344	NM_000489.3	1462	Gag/Tag																																																																														
SPEN	0	MSKCC	GRCh37	1	16247407	16247407	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	49	489	0	ENST00000375759.3:c.1678A>G	p.Asn560Asp	p.N560D	ENST00000375759	NM_015001.2	560	Aat/Gat																																																																														
SPEN	0	MSKCC	GRCh37	1	16258803	16258803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	275	765	0	ENST00000375759.3:c.6068T>C	p.Val2023Ala	p.V2023A	ENST00000375759	NM_015001.2	2023	gTg/gCg																																																																														
SPEN	0	MSKCC	GRCh37	1	16259043	16259043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	258	725	0	ENST00000375759.3:c.6313delG	p.Ala2105LeufsTer33	p.A2105Lfs*33	ENST00000375759	NM_015001.2	2103	aGg/ag																																																																														
STK40	0	MSKCC	GRCh37	1	36824388	36824388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	263	717	0	ENST00000373129.3:c.148G>A	p.Val50Met	p.V50M	ENST00000373129	NM_032017.1	50	Gtg/Atg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	193	431	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	197	482	2	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165717	118165718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	166	390	1	ENST00000369448.3:c.228dup	p.Gly77TrpfsTer33	p.G77Wfs*33	ENST00000369448	NM_017709.3	76	gct/gcTt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120483219	120483219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	102	558	2	ENST00000256646.2:c.3142C>T	p.Arg1048Cys	p.R1048C	ENST00000256646	NM_024408.3	1048	Cgc/Tgc																																																																														
DDR2	0	MSKCC	GRCh37	1	162741813	162741813	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	183	391	1	ENST00000367921.3:c.1505-1G>T		p.X502_splice	ENST00000367921	NM_006182.2	502																																																																															
AKT3	0	MSKCC	GRCh37	1	243828126	243828126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	300	671	3	ENST00000263826.5:c.232C>A	p.Gln78Lys	p.Q78K	ENST00000263826	NM_005465.4	78	Cag/Aag																																																																														
RET	0	MSKCC	GRCh37	10	43596120	43596120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	262	796	0	ENST00000355710.3:c.287A>G	p.Tyr96Cys	p.Y96C	ENST00000355710	NM_020975.4	96	tAc/tGc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114710595	114710597	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs754968616		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	206	718	0	ENST00000543371.1:c.85_87del	p.Glu29del	p.E29del	ENST00000543371	NM_001198531.1	27	cAGGag/cag																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	186	482	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343660	118343660	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	44	543	0	ENST00000534358.1:c.1790delT	p.Leu597CysfsTer26	p.L597Cfs*26	ENST00000534358	NM_005933.3	596	Ttt/tt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373430	118373430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	183	539	0	ENST00000534358.1:c.6823A>G	p.Thr2275Ala	p.T2275A	ENST00000534358	NM_005933.3	2275	Act/Gct																																																																														
CHEK1	0	MSKCC	GRCh37	11	125523663	125523663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	121	619	0	ENST00000428830.2:c.1256G>T	p.Arg419Met	p.R419M	ENST00000428830	NM_001114121.2	419	aGg/aTg																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	209	473	7	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	211	739	11	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420208	49420208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	314	854	0	ENST00000301067.7:c.15541G>T	p.Gly5181Trp	p.G5181W	ENST00000301067	NM_003482.3	5181	Ggg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432243	49432243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	355	891	3	ENST00000301067.7:c.8896C>T	p.Arg2966Trp	p.R2966W	ENST00000301067	NM_003482.3	2966	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443482	49443482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	216	525	0	ENST00000301067.7:c.3889C>T	p.Arg1297Cys	p.R1297C	ENST00000301067	NM_003482.3	1297	Cgt/Tgt																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	344	876	4	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426790	121426790	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201095611		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	283	807	2	ENST00000257555.6:c.481G>A	p.Ala161Thr	p.A161T	ENST00000257555		161	Gcc/Acc																																																																														
POLE	0	MSKCC	GRCh37	12	133202290	133202290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	321	839	0	ENST00000320574.5:c.6598G>A	p.Glu2200Lys	p.E2200K	ENST00000320574	NM_006231.2	2200	Gag/Aag																																																																														
IRS2	0	MSKCC	GRCh37	13	110434967	110434967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	343	1007	4	ENST00000375856.3:c.3434G>A	p.Arg1145His	p.R1145H	ENST00000375856	NM_003749.2	1145	cGc/cAc																																																																														
IRS2	0	MSKCC	GRCh37	13	110435136	110435136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	150	834	0	ENST00000375856.3:c.3265G>C	p.Ala1089Pro	p.A1089P	ENST00000375856	NM_003749.2	1089	Gcc/Ccc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30098266	30098266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	148	760	2	ENST00000331968.5:c.1706G>A	p.Cys569Tyr	p.C569Y	ENST00000331968	NM_002742.2	569	tGc/tAc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	283	801	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc																																																																														
RAD51B	0	MSKCC	GRCh37	14	68353890	68353890	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	282	637	0	ENST00000487270.1:c.725T>C	p.Leu242Ser	p.L242S	ENST00000487270	NM_133509.3	242	tTg/tCg																																																																														
TSHR	0	MSKCC	GRCh37	14	81609807	81609807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	157	406	1	ENST00000298171.2:c.1405C>A	p.Leu469Ile	p.L469I	ENST00000298171	NM_000369.2	469	Ctc/Atc																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643578	38643578	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	270	719	2	ENST00000299084.4:c.1048G>T	p.Gly350Ter	p.G350*	ENST00000299084	NM_152594.2	350	Gga/Tga																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	316	1005	5	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
TSC2	0	MSKCC	GRCh37	16	2122886	2122886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	150	845	0	ENST00000219476.3:c.2257G>A	p.Ala753Thr	p.A753T	ENST00000219476	NM_000548.3	753	Gcc/Acc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2223214	2223214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	312	823	0	ENST00000326181.6:c.826G>A	p.Glu276Lys	p.E276K	ENST00000326181	NM_032271.2	276	Gag/Aag																																																																														
SLX4	0	MSKCC	GRCh37	16	3634851	3634853	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	292	797	0	ENST00000294008.3:c.4656_4658del	p.Lys1552del	p.K1552del	ENST00000294008	NM_032444.2	1552	aaGAAc/aac																																																																														
SLX4	0	MSKCC	GRCh37	16	3639726	3639726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	401	1095	3	ENST00000294008.3:c.3913G>A	p.Ala1305Thr	p.A1305T	ENST00000294008	NM_032444.2	1305	Gca/Aca																																																																														
CREBBP	0	MSKCC	GRCh37	16	3828768	3828768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	309	752	1	ENST00000262367.5:c.1874G>A	p.Arg625His	p.R625H	ENST00000262367	NM_004380.2	625	cGc/cAc																																																																														
CTCF	0	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	233	716	1	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821938	72821938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	60	326	2	ENST00000268489.5:c.10237G>A	p.Asp3413Asn	p.D3413N	ENST00000268489	NM_006885.3	3413	Gac/Aac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827702	72827702	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	317	581	1	ENST00000268489.5:c.8879T>A	p.Val2960Asp	p.V2960D	ENST00000268489	NM_006885.3	2960	gTc/gAc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	175	482	4	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346157	89346158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	25	275	0	ENST00000301030.4:c.6792dup	p.Ala2265ArgfsTer8	p.A2265Rfs*8	ENST00000301030	NM_001256183.1	2264	-/C																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347752	89347752	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148243995		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	55	678	0	ENST00000301030.4:c.5198C>T	p.Ala1733Val	p.A1733V	ENST00000301030	NM_001256183.1	1733	gCg/gTg																																																																														
GPS2	0	MSKCC	GRCh37	17	7216380	7216380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	262	725	1	ENST00000380728.2:c.868delC	p.Gln290SerfsTer55	p.Q290Sfs*55	ENST00000380728		290	Cag/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	304	763	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	250	609	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
CDK12	0	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	128	623	2	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244070	41244070	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	47	686	0	ENST00000357654.3:c.3478A>G	p.Lys1160Glu	p.K1160E	ENST00000357654	NM_007294.3	1160	Aag/Gag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	246	687	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RNF43	0	MSKCC	GRCh37	17	56435233	56435234	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	263	753	0	ENST00000407977.2:c.1903dup	p.Ser635LysfsTer112	p.S635Kfs*112	ENST00000407977		635	agt/aAgt																																																																														
RNF43	0	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	211	533	0	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																																																														
CD79B	0	MSKCC	GRCh37	17	62009590	62009590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	179	859	0	ENST00000392795.3:c.32G>A	p.Ser11Asn	p.S11N	ENST00000392795	NM_001039933.1	11	aGc/aAc																																																																														
SOX9	0	MSKCC	GRCh37	17	70119010	70119010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	309	914	0	ENST00000245479.2:c.582G>T	p.Glu194Asp	p.E194D	ENST00000245479	NM_000346.3	194	gaG/gaT																																																																														
RPTOR	0	MSKCC	GRCh37	17	78931487	78931487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	275	851	1	ENST00000306801.3:c.3434G>A	p.Arg1145Gln	p.R1145Q	ENST00000306801	NM_020761.2	1145	cGg/cAg																																																																														
TCF3	0	MSKCC	GRCh37	19	1619821	1619821	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	319	939	0	ENST00000344749.5:c.1125delC	p.Gly376ValfsTer18	p.G376Vfs*18	ENST00000344749	NM_001136139.2	375	ccC/cc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226589	2226589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	159	891	4	ENST00000398665.3:c.4069C>T	p.Arg1357Cys	p.R1357C	ENST00000398665	NM_032482.2	1357	Cgc/Tgc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5210704	5210704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	265	754	0	ENST00000357368.4:c.5347C>T	p.Arg1783Trp	p.R1783W	ENST00000357368	NM_002850.3	1783	Cgg/Tgg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5274304	5274304	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	305	775	6	ENST00000357368.4:c.143del	p.Gly48ValfsTer17	p.G48Vfs*17	ENST00000357368	NM_002850.3	48	gGt/gt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599970	10599970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	346	865	1	ENST00000171111.5:c.1606C>T	p.Arg536Cys	p.R536C	ENST00000171111	NM_203500.1	536	Cgc/Tgc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11107001	11107001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	146	686	4	ENST00000344626.4:c.1706G>A	p.Arg569Gln	p.R569Q	ENST00000344626	NM_003072.3	569	cGg/cAg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15295828	15295828	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	329	964	1	ENST00000263388.2:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000263388	NM_000435.2	767	Cgt/Tgt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15303200	15303200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	311	989	1	ENST00000263388.2:c.328C>T	p.Arg110Cys	p.R110C	ENST00000263388	NM_000435.2	110	Cgt/Tgt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	125	760	2	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
AKT2	0	MSKCC	GRCh37	19	40745977	40745977	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	294	797	0	ENST00000392038.2:c.614A>G	p.Gln205Arg	p.Q205R	ENST00000392038	NM_001626.4	205	cAg/cGg																																																																														
ERF	0	MSKCC	GRCh37	19	42752788	42752789	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	282	960	0	ENST00000222329.4:c.1475_1476del	p.Cys492SerfsTer13	p.C492Sfs*13	ENST00000222329	NM_006494.2	492	tGT/t																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	303	1043	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
ERF	2077	MSKCC	GRCh37	19	42753887	42753887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	293	920	0	ENST00000222329.4:c.377del	p.Gly126ValfsTer145	p.G126Vfs*145	ENST00000222329	NM_006494.2	126	gGt/gt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716250	52716250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	235	691	1	ENST00000322088.6:c.694G>A	p.Ala232Thr	p.A232T	ENST00000322088	NM_014225.5	232	Gcc/Acc																																																																														
MYCN	0	MSKCC	GRCh37	2	16086094	16086094	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	115	830	3	ENST00000281043.3:c.1274del	p.Lys425ArgfsTer31	p.K425Rfs*31	ENST00000281043	NM_005378.4	424	Aaa/aa																																																																														
ALK	0	MSKCC	GRCh37	2	29416200	29416200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	128	656	0	ENST00000389048.3:c.4753G>A	p.Gly1585Ser	p.G1585S	ENST00000389048	NM_004304.4	1585	Ggc/Agc																																																																														
TMEM127	0	MSKCC	GRCh37	2	96919691	96919691	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200327514		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	99	554	0	ENST00000258439.3:c.572C>T	p.Thr191Met	p.T191M	ENST00000258439	NM_001193304.2	191	aCg/aTg																																																																														
CTLA4	0	MSKCC	GRCh37	2	204737495	204737495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	126	698	3	ENST00000302823.3:c.632G>A	p.Cys211Tyr	p.C211Y	ENST00000302823	NM_005214.4	211	tGt/tAt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251644	212251644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	285	494	0	ENST00000342788.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000342788	NM_005235.2	1139	Cgg/Tgg																																																																														
TOP1	0	MSKCC	GRCh37	20	39745000	39745000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	144	740	0	ENST00000361337.2:c.1790C>T	p.Thr597Met	p.T597M	ENST00000361337	NM_003286.2	597	aCg/aTg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46265178	46265178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	205	448	1	ENST00000371998.3:c.2048G>A	p.Arg683Gln	p.R683Q	ENST00000371998		683	cGg/cAg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42852493	42852493	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	301	879	0	ENST00000398585.3:c.593A>G	p.Tyr198Cys	p.Y198C	ENST00000398585	NM_001135099.1	198	tAc/tGc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41274897	41274897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	106	628	0	ENST00000349496.5:c.1147T>C	p.Trp383Arg	p.W383R	ENST00000349496	NM_001904.3	383	Tgg/Cgg																																																																														
SETD2	0	MSKCC	GRCh37	3	47058596	47058596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	253	668	0	ENST00000409792.3:c.7682C>T	p.Thr2561Ile	p.T2561I	ENST00000409792	NM_014159.6	2561	aCt/aTt																																																																														
BAP1	0	MSKCC	GRCh37	3	52440912	52440912	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	284	686	0	ENST00000460680.1:c.592delG	p.Glu198ArgfsTer33	p.E198Rfs*33	ENST00000460680	NM_004656.3	198	Gag/ag																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	217	626	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																														
RYBP	0	MSKCC	GRCh37	3	72427721	72427721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	161	425	0	ENST00000477973.2:c.767G>A	p.Val257Ile	p.V257I	ENST00000477973	NM_012234.5	257	Gtc/Atc																																																																														
GATA2	0	MSKCC	GRCh37	3	128200004	128200004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	146	786	0	ENST00000341105.2:c.1301C>T	p.Ala434Val	p.A434V	ENST00000341105	NM_032638.4	434	gCt/gTt																																																																														
BCL6	0	MSKCC	GRCh37	3	187440320	187440320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	132	599	0	ENST00000232014.4:c.2047G>A	p.Ala683Thr	p.A683T	ENST00000232014	NM_001130845.1	683	Gcc/Acc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1795713	1795713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	139	314	0	ENST00000260795.2:c.52G>C	p.Ala18Pro	p.A18P	ENST00000260795		18	Gcc/Ccc																																																																														
FAM175A	0	MSKCC	GRCh37	4	84383944	84383944	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	120	701	1	ENST00000321945.7:c.908del	p.Asn303IlefsTer17	p.N303Ifs*17	ENST00000321945	NM_139076.2	303	aAt/at																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	163	523	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																														
APC	0	MSKCC	GRCh37	5	112157674	112157674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	93	521	0	ENST00000257430.4:c.1394C>T	p.Ala465Val	p.A465V	ENST00000257430	NM_000038.5	465	gCa/gTa																																																																														
CSF1R	0	MSKCC	GRCh37	5	149433707	149433707	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	269	702	1	ENST00000286301.3:c.2844T>A	p.Ser948Arg	p.S948R	ENST00000286301	NM_005211.3	948	agT/agA																																																																														
NSD1	0	MSKCC	GRCh37	5	176638357	176638357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	88	776	3	ENST00000439151.2:c.2957C>T	p.Ala986Val	p.A986V	ENST00000439151	NM_022455.4	986	gCa/gTa																																																																														
NSD1	0	MSKCC	GRCh37	5	176675287	176675287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	97	482	2	ENST00000439151.2:c.4603C>T	p.Arg1535Cys	p.R1535C	ENST00000439151	NM_022455.4	1535	Cgc/Tgc																																																																														
IRF4	0	MSKCC	GRCh37	6	393366	393366	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	43	419	0	ENST00000380956.4:c.214A>G	p.Lys72Glu	p.K72E	ENST00000380956	NM_001195286.1	72	Aag/Gag																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27840030	27840030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	164	493	1	ENST00000328488.2:c.64G>A	p.Ala22Thr	p.A22T	ENST00000328488	NM_003533.2	22	Gcc/Acc																																																																														
TAP1	0	MSKCC	GRCh37	6	32821580	32821582	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	290	863	0	ENST00000354258.4:c.12_14del	p.Leu5del	p.L5del	ENST00000354258	NM_000593.5	4	ctTCTc/ctc																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	105	729	0	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527705	157527705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	232	672	1	ENST00000346085.5:c.5430G>T	p.Gln1810His	p.Q1810H	ENST00000346085	NM_020732.3	1810	caG/caT																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527931	157527931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	243	738	0	ENST00000346085.5:c.5659del	p.Ala1887HisfsTer87	p.A1887Hfs*87	ENST00000346085	NM_020732.3	1886	Ggg/gg																																																																														
PARK2	0	MSKCC	GRCh37	6	162683680	162683680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	225	605	1	ENST00000366898.1:c.289C>T	p.Arg97Trp	p.R97W	ENST00000366898	NM_004562.2	97	Cgg/Tgg																																																																														
PMS2	0	MSKCC	GRCh37	7	6026652	6026653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1345	214	1138	0	ENST00000265849.7:c.1743dup	p.Glu582ArgfsTer8	p.E582Rfs*8	ENST00000265849	NM_000535.5	581	-/A																																																																														
ETV1	0	MSKCC	GRCh37	7	13949307	13949307	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	75	407	0	ENST00000405192.2:c.821del	p.Gly274AlafsTer46	p.G274Afs*46	ENST00000405192	NM_001163147.1	274	gGc/gc																																																																														
SMO	0	MSKCC	GRCh37	7	128852282	128852282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	121	735	1	ENST00000249373.3:c.2354C>T	p.Ser785Leu	p.S785L	ENST00000249373	NM_005631.4	785	tCg/tTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151891109	151891109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	172	425	2	ENST00000262189.6:c.4645C>T	p.Pro1549Ser	p.P1549S	ENST00000262189	NM_170606.2	1549	Cca/Tca																																																																														
TCEB1	0	MSKCC	GRCh37	8	74868172	74868172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	51	156	0	ENST00000284811.8:c.122C>T	p.Thr41Met	p.T41M	ENST00000284811		41	aCg/aTg																																																																														
AGO2	0	MSKCC	GRCh37	8	141542687	141542687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	318	788	1	ENST00000220592.5:c.2299G>A	p.Val767Ile	p.V767I	ENST00000220592	NM_012154.3	767	Gtc/Atc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737551	145737551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	328	746	1	ENST00000428558.2:c.3212G>A	p.Arg1071His	p.R1071H	ENST00000428558	NM_004260.3	1071	cGc/cAc																																																																														
SYK	0	MSKCC	GRCh37	9	93639911	93639911	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	79	421	0	ENST00000375746.1:c.1240A>G	p.Lys414Glu	p.K414E	ENST00000375746	NM_001174167.1	414	Aaa/Gaa																																																																														
BCOR	0	MSKCC	GRCh37	X	39937164	39937164	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	174	444	1	ENST00000378444.4:c.19del	p.Leu7CysfsTer9	p.L7Cfs*9	ENST00000378444	NM_001123385.1	7	Ctg/tg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949134	44949134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	40	342	0	ENST00000377967.4:c.3695G>A	p.Gly1232Asp	p.G1232D	ENST00000377967	NM_021140.2	1232	gGc/gAc																																																																														
RAC1	0	MSKCC	GRCh37	7	6441499	6441499	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0019937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	41	290	0	ENST00000356142.4:c.346T>C	p.Trp116Arg	p.W116R	ENST00000356142	NM_018890.3	116	Tgg/Cgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	11	626	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1217	40	1191	0	ENST00000269305.4:c.394A>C	p.Lys132Gln	p.K132Q	ENST00000269305	NM_001126112.2	132	Aag/Cag																																																																														
NF1	0	MSKCC	GRCh37	17	29541542	29541542	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	21	735	0	ENST00000358273.4:c.1466A>G	p.Tyr489Cys	p.Y489C	ENST00000358273	NM_001042492.2	489	tAt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0019940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	371	534	0	ENST00000269305.4:c.375+2T>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
MEF2B	0	MSKCC	GRCh37	19	19257881	19257881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	335	850	0	ENST00000162023.5:c.505C>T	p.Pro169Ser	p.P169S	ENST00000162023		169	Ccc/Tcc																																																																														
RAF1	0	MSKCC	GRCh37	3	12650334	12650334	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	382	676	0	ENST00000251849.4:c.512A>G	p.Lys171Arg	p.K171R	ENST00000251849	NM_002880.3	171	aAa/aGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	178	618	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0019945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	210	575	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
GLI1	0	MSKCC	GRCh37	12	57865726	57865726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144893788		P-0019945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	190	907	0	ENST00000228682.2:c.3203G>A	p.Arg1068Gln	p.R1068Q	ENST00000228682	NM_005269.2	1068	cGg/cAg																																																																														
MYD88	0	MSKCC	GRCh37	3	38182028	38182028	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	185	635	0	ENST00000396334.3:c.652T>G	p.Trp218Gly	p.W218G	ENST00000396334	NM_002468.4	218	Tgg/Ggg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	56	602	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	66	872	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																																																														
MSH6	0	MSKCC	GRCh37	2	48026297	48026297	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	30	460	0	ENST00000234420.5:c.1175A>T	p.Asp392Val	p.D392V	ENST00000234420	NM_000179.2	392	gAt/gTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974751	21974752	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0019946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	51	401	0	ENST00000304494.5:c.75_76delinsT	p.Glu26ArgfsTer27	p.E26Rfs*27	ENST00000304494	NM_000077.4	25	gtAGag/gtTag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974751	21974752	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0019946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	51	401	0	ENST00000304494.5:c.75_76delinsT	p.Glu26ArgfsTer27	p.E26Rfs*27	ENST00000304494	NM_000077.4	25	gtAGag/gtTag																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0019948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	297	693	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
MGA	0	MSKCC	GRCh37	15	42052601	42052601	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0019948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	461	623	0	ENST00000219905.7:c.7272T>G	p.Tyr2424Ter	p.Y2424*	ENST00000219905	NM_001164273.1	2424	taT/taG																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	145	652	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	120	632	10	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
RAD54L	0	MSKCC	GRCh37	1	46740279	46740279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150315374		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	104	610	0	ENST00000371975.4:c.1759C>T	p.Arg587Trp	p.R587W	ENST00000371975	NM_003579.3	587	Cgg/Tgg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	112	683	3	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	121	695	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	118	542	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	109	688	3	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	132	789	1	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																																																														
NF1	0	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	127	750	2	ENST00000358273.4:c.2033delC	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																																																														
FAT1	2195	MSKCC	GRCh37	4	187521114	187521114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760053140		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	115	571	1	ENST00000441802.2:c.12041C>T	p.Thr4014Met	p.T4014M	ENST00000441802	NM_005245.3	4014	aCg/aTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	38	156	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	114	627	0	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																														
SOX9	6662	MSKCC	GRCh37	17	70120031	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	21	113	0	ENST00000245479.2:c.1037del	p.Pro346ArgfsTer37	p.P346Rfs*37	ENST00000245479	NM_000346.3	345	Ccc/cc																																																																														
INHBA	0	MSKCC	GRCh37	7	41730075	41730075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	95	696	0	ENST00000242208.4:c.454C>T	p.Arg152Cys	p.R152C	ENST00000242208	NM_002192.2	152	Cgt/Tgt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399387	139399387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	160	810	2	ENST00000277541.6:c.4756C>T	p.Arg1586Cys	p.R1586C	ENST00000277541	NM_017617.3	1586	Cgc/Tgc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	203	896	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	119	562	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	129	888	2	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	124	749	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	148	922	1	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
MSH3	0	MSKCC	GRCh37	5	80064780	80064780	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	125	734	0	ENST00000265081.6:c.2216del	p.Asn739IlefsTer7	p.N739Ifs*7	ENST00000265081	NM_002439.4	737	ctA/ct																																																																														
KMT2B	0	MSKCC	GRCh37	19	36229256	36229256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	140	825	2	ENST00000222270.7:c.7946G>A	p.Arg2649His	p.R2649H	ENST00000222270	NM_014727.1	2649	cGc/cAc																																																																														
DIS3	0	MSKCC	GRCh37	13	73355047	73355047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	101	684	1	ENST00000377767.4:c.323G>A	p.Arg108His	p.R108H	ENST00000377767	NM_014953.3	108	cGc/cAc																																																																														
FLCN	0	MSKCC	GRCh37	17	17116976	17116976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	100	596	2	ENST00000285071.4:c.1733G>A	p.Arg578Gln	p.R578Q	ENST00000285071	NM_144997.5	578	cGg/cAg																																																																														
NF1	0	MSKCC	GRCh37	17	29654765	29654765	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	87	623	4	ENST00000358273.4:c.5521del	p.Gln1841AsnfsTer22	p.Q1841Nfs*22	ENST00000358273	NM_001042492.2	1839	atC/at																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244440	41244440	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	138	761	1	ENST00000357654.3:c.3108del	p.Phe1036LeufsTer12	p.F1036Lfs*12	ENST00000357654	NM_007294.3	1036	ttT/tt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59760703	59760703	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	56	828	0	ENST00000259008.2:c.3704A>C	p.Lys1235Thr	p.K1235T	ENST00000259008	NM_032043.2	1235	aAa/aCa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602781	10602781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	151	832	1	ENST00000171111.5:c.797C>T	p.Ala266Val	p.A266V	ENST00000171111	NM_203500.1	266	gCg/gTg																																																																														
JAK3	0	MSKCC	GRCh37	19	17955122	17955122	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	114	911	0	ENST00000458235.1:c.105del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	35	ccC/cc																																																																														
EPCAM	0	MSKCC	GRCh37	2	47600946	47600946	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	45	643	0	ENST00000263735.4:c.185-1G>C		p.X62_splice	ENST00000263735	NM_002354.2	62																																																																															
REL	0	MSKCC	GRCh37	2	61145736	61145736	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	90	493	0	ENST00000295025.8:c.852del	p.Asp285IlefsTer24	p.D285Ifs*24	ENST00000295025	NM_002908.2	283	gAa/ga																																																																														
ERCC3	0	MSKCC	GRCh37	2	128046961	128046961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	137	775	0	ENST00000285398.2:c.774T>A	p.Asp258Glu	p.D258E	ENST00000285398	NM_000122.1	258	gaT/gaA																																																																														
ERBB4	0	MSKCC	GRCh37	2	212589875	212589875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	126	791	1	ENST00000342788.4:c.667G>A	p.Gly223Arg	p.G223R	ENST00000342788	NM_005235.2	223	Gga/Aga																																																																														
NCOA3	0	MSKCC	GRCh37	20	46262906	46262906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	138	720	2	ENST00000371998.3:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000371998		360	cGa/cAa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62321719	62321719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	122	789	0	ENST00000508582.2:c.2410C>A	p.Pro804Thr	p.P804T	ENST00000508582		804	Cct/Act																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980497	1980497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	173	891	1	ENST00000382891.5:c.3959G>A	p.Arg1320Gln	p.R1320Q	ENST00000382891	NM_133335.3	1320	cGg/cAg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201750	66201750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	96	729	0	ENST00000273854.3:c.2752G>A	p.Glu918Lys	p.E918K	ENST00000273854	NM_004439.5	918	Gag/Aag																																																																														
E2F3	0	MSKCC	GRCh37	6	20481637	20481637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	84	521	0	ENST00000346618.3:c.710del	p.Asn237ThrfsTer27	p.N237Tfs*27	ENST00000346618	NM_001949.4	236	Aaa/aa																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553432	106553432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	73	441	0	ENST00000369096.4:c.1397T>C	p.Leu466Pro	p.L466P	ENST00000369096	NM_001198.3	466	cTc/cCc																																																																														
ESR1	0	MSKCC	GRCh37	6	152201882	152201882	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	84	722	0	ENST00000206249.3:c.736T>C	p.Tyr246His	p.Y246H	ENST00000206249	NM_000125.3	246	Tac/Cac																																																																														
MET	0	MSKCC	GRCh37	7	116395478	116395478	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45602940		P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	130	685	0	ENST00000397752.3:c.1771C>T	p.Arg591Trp	p.R591W	ENST00000397752	NM_000245.2	591	Cgg/Tgg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87342764	87342764	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	82	711	0	ENST00000277120.3:c.1049A>C	p.Asn350Thr	p.N350T	ENST00000277120		350	aAt/aCt																																																																														
BCOR	0	MSKCC	GRCh37	X	39932356	39932356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	188	463	0	ENST00000378444.4:c.2243G>A	p.Arg748Gln	p.R748Q	ENST00000378444	NM_001123385.1	748	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	98	637	0				ENST00000310581	NM_198253.2																																																																																
FGFR4	0	MSKCC	GRCh37	5	176520456	176520456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	192	756	1	ENST00000292408.4:c.1301G>T	p.Arg434Leu	p.R434L	ENST00000292408	NM_213647.1	434	cGa/cTa																																																																														
RBM10	0	MSKCC	GRCh37	X	47041636	47041636	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	202	910	1	ENST00000329236.7:c.1627C>T	p.Gln543Ter	p.Q543*	ENST00000329236	NM_001204466.1	543	Cag/Tag																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4117439	4117439	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202220799		P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	105	655	1	ENST00000262948.5:c.281C>T	p.Ser94Leu	p.S94L	ENST00000262948	NM_030662.3	94	tCg/tTg																																																																														
STK11	0	MSKCC	GRCh37	19	1221228	1221228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	225	786	0	ENST00000326873.7:c.751G>T	p.Gly251Cys	p.G251C	ENST00000326873	NM_000455.4	251	Ggt/Tgt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780921	9780921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	186	807	1	ENST00000377346.4:c.1643G>A	p.Arg548Gln	p.R548Q	ENST00000377346	NM_005026.3	548	cGg/cAg																																																																														
MDM4	0	MSKCC	GRCh37	1	204518334	204518334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	175	639	0	ENST00000367182.3:c.997G>T	p.Asp333Tyr	p.D333Y	ENST00000367182	NM_001278516.1	333	Gat/Tat																																																																														
CTCF	0	MSKCC	GRCh37	16	67671614	67671614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	104	640	0	ENST00000264010.4:c.2023G>A	p.Asp675Asn	p.D675N	ENST00000264010	NM_006565.3	675	Gac/Aac																																																																														
SDHA	0	MSKCC	GRCh37	5	233702	233702	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	179	602	2	ENST00000264932.6:c.1006G>T	p.Asp336Tyr	p.D336Y	ENST00000264932	NM_004168.2	336	Gac/Tac																																																																														
TERT	0	MSKCC	GRCh37	5	1279436	1279436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	200	841	0	ENST00000310581.5:c.2100G>T	p.Gln700His	p.Q700H	ENST00000310581	NM_198253.2	700	caG/caT																																																																														
BRAF	0	MSKCC	GRCh37	7	140453134	140453135	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	215	766	1	ENST00000288602.6:c.1800_1801delinsTG	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	600	gtGAaa/gtTGaa																																																																														
SOX17	0	MSKCC	GRCh37	8	55370795	55370795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	56	636	1	ENST00000297316.4:c.97G>T	p.Ala33Ser	p.A33S	ENST00000297316	NM_022454.3	33	Gcc/Tcc																																																																														
ATRX	0	MSKCC	GRCh37	X	76813050	76813050	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	244	725	0	ENST00000373344.5:c.6571G>C	p.Asp2191His	p.D2191H	ENST00000373344	NM_000489.3	2191	Gat/Cat																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0019952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	129	624	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252856	36252857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	106	541	0	ENST00000300305.3:c.505dupA	p.Arg169LysfsTer44	p.R169Kfs*44	ENST00000300305		169	aga/aAga																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061261	38061264	+	missense_variant	Missense_Mutation	ONP	TAGG	TAGG	GAGC			P-0019952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	141	815	0	ENST00000250448.2:c.725_728delinsGCTC	p.Ser242_Tyr243delinsCysSer	p.S242_Y243delinsCS	ENST00000250448	NM_004496.3	242	tCCTAc/tGCTCc																																																																														
NF1	0	MSKCC	GRCh37	17	29486102	29486102	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	124	660	0	ENST00000358273.4:c.279T>A	p.Cys93Ter	p.C93*	ENST00000358273	NM_001042492.2	93	tgT/tgA																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457335	67457337	+	missense_variant	Missense_Mutation	ONP	ACG	ACG	GCT			P-0019952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	145	693	2	ENST00000327367.4:c.309_311delinsGCT	p.Arg104Leu	p.R104L	ENST00000327367	NM_005902.3	103	ctACGg/ctGCTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	795	763	0	ENST00000269305.4:c.725G>C	p.Cys242Ser	p.C242S	ENST00000269305	NM_001126112.2	242	tGc/tCc																																																																														
ROS1	0	MSKCC	GRCh37	6	117718186	117718186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	191	706	0	ENST00000368508.3:c.671C>A	p.Pro224His	p.P224H	ENST00000368508	NM_002944.2	224	cCt/cAt																																																																														
CDH1	0	MSKCC	GRCh37	16	68845744	68845771	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACTGGGCTGGACCGAGAGGTCAGGGGT	CACTGGGCTGGACCGAGAGGTCAGGGGT	-			P-0019953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	155	573	0	ENST00000261769.5:c.992_1008+11del		p.X331_splice	ENST00000261769	NM_004360.3	331																																																																															
MAP2K4	0	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	245	729	1	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																														
FGFR1	0	MSKCC	GRCh37	8	38277157	38277157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	6668	925	3	ENST00000425967.3:c.1271C>T	p.Ser424Leu	p.S424L	ENST00000425967	NM_001174067.1	424	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0019956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	45	763	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	110	825	1	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0019957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	447	874	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118363809	118363809	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	177	728	1	ENST00000534358.1:c.5042A>T	p.Glu1681Val	p.E1681V	ENST00000534358	NM_005933.3	1681	gAg/gTg																																																																														
FLT3	0	MSKCC	GRCh37	13	28589732	28589732	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	219	708	0	ENST00000241453.7:c.2648C>G	p.Ser883Ter	p.S883*	ENST00000241453	NM_004119.2	883	tCa/tGa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845842	72845842	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	192	815	1	ENST00000268489.5:c.3625A>G	p.Lys1209Glu	p.K1209E	ENST00000268489	NM_006885.3	1209	Aag/Gag																																																																														
PLK2	0	MSKCC	GRCh37	5	57750437	57750438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0019957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	172	728	0	ENST00000274289.3:c.2030dup	p.Asn678GlufsTer8	p.N678Efs*8	ENST00000274289	NM_006622.3	677	ctg/ctTg																																																																														
TAP1	0	MSKCC	GRCh37	6	32821545	32821545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	224	885	0	ENST00000354258.4:c.49C>G	p.Pro17Ala	p.P17A	ENST00000354258	NM_000593.5	17	Ccg/Gcg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0019959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	12	764	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	9	693	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0019960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	105	922	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096688	178096688	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	42	590	0	ENST00000397062.3:c.643A>C	p.Ser215Arg	p.S215R	ENST00000397062	NM_006164.4	215	Agt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	268	646	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	0	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	232	815	0	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																														
AKT1	0	MSKCC	GRCh37	14	105239812	105239812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	42	792	1	ENST00000349310.3:c.808G>A	p.Val270Met	p.V270M	ENST00000349310	NM_001014432.1	270	Gtg/Atg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52582249	52582249	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	40	263	0	ENST00000394830.3:c.4579C>T	p.Arg1527Ter	p.R1527*	ENST00000394830	NM_018313.4	1527	Cga/Tga																																																																														
PBRM1	0	MSKCC	GRCh37	3	52623218	52623218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	55	571	1	ENST00000394830.3:c.2833C>T	p.Arg945Cys	p.R945C	ENST00000394830	NM_018313.4	945	Cgc/Tgc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52623229	52623229	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	41	513	0	ENST00000394830.3:c.2822C>G	p.Ser941Ter	p.S941*	ENST00000394830	NM_018313.4	941	tCa/tGa																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15809088	15809088	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	141	637	0	ENST00000307771.7:c.73G>T	p.Glu25Ter	p.E25*	ENST00000307771	NM_005089.3	25	Gag/Tag																																																																														
ARAF	0	MSKCC	GRCh37	X	47428185	47428185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	39	820	0	ENST00000377045.4:c.1145C>T	p.Thr382Ile	p.T382I	ENST00000377045	NM_001654.4	382	aCa/aTa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	177	578	3	ENST00000344626.4:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000344626	NM_003072.3	1192	cGc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	134	596	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	179	576	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	426	630	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
NF1	0	MSKCC	GRCh37	17	29553486	29553486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0019964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	158	637	0	ENST00000358273.4:c.2035A>G	p.Ile679Val	p.I679V	ENST00000358273	NM_001042492.2	679	Att/Gtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0019965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	409	790	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	578	571	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373574	118373574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	270	503	0	ENST00000534358.1:c.6967G>T	p.Ala2323Ser	p.A2323S	ENST00000534358	NM_005933.3	2323	Gca/Tca																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	23	616	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	242	751	2	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	37	615	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
DDR2	0	MSKCC	GRCh37	1	162724988	162724988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	137	566	0	ENST00000367921.3:c.460G>C	p.Asp154His	p.D154H	ENST00000367921	NM_006182.2	154	Gac/Cac																																																																														
KDM5A	0	MSKCC	GRCh37	12	443562	443562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	105	731	0	ENST00000399788.2:c.1335G>C	p.Leu445Phe	p.L445F	ENST00000399788	NM_001042603.1	445	ttG/ttC																																																																														
KDM5A	0	MSKCC	GRCh37	12	493320	493320	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	87	489	1	ENST00000399788.2:c.244-1G>A		p.X82_splice	ENST00000399788	NM_001042603.1	82																																																																															
IRS2	0	MSKCC	GRCh37	13	110434745	110434745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	149	640	0	ENST00000375856.3:c.3656C>A	p.Pro1219Gln	p.P1219Q	ENST00000375856	NM_003749.2	1219	cCg/cAg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781857	3781857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	188	959	0	ENST00000262367.5:c.4810A>G	p.Asn1604Asp	p.N1604D	ENST00000262367	NM_004380.2	1604	Aac/Gac																																																																														
SMAD2	0	MSKCC	GRCh37	18	45423027	45423027	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	82	426	0	ENST00000262160.6:c.101A>G	p.Asn34Ser	p.N34S	ENST00000262160	NM_005901.5	34	aAt/aGt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449496	149449496	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	135	740	1	ENST00000286301.3:c.1450G>C	p.Glu484Gln	p.E484Q	ENST00000286301	NM_005211.3	484	Gag/Cag																																																																														
LATS1	0	MSKCC	GRCh37	6	150005035	150005035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	77	576	0	ENST00000253339.5:c.1190C>T	p.Pro397Leu	p.P397L	ENST00000253339		397	cCt/cTt																																																																														
BRAF	0	MSKCC	GRCh37	7	140476740	140476740	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	142	509	0	ENST00000288602.6:c.1666A>T	p.Ile556Phe	p.I556F	ENST00000288602	NM_004333.4	556	Att/Ttt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	50	566	0	ENST00000304494.5:c.151-2A>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	50	566	0	ENST00000304494.5:c.151-2A>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971209	21971209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0019966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	50	566	0	ENST00000304494.5:c.151-2A>C		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0019969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	882	545	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	128	689	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0019974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	79	728	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
IRS1	0	MSKCC	GRCh37	2	227661129	227661131	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0019976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	137	901	0	ENST00000305123.5:c.2324_2326del	p.Gln775del	p.Q775del	ENST00000305123	NM_005544.2	775	cAGCgc/cgc																																																																														
ATRX	0	MSKCC	GRCh37	X	76937477	76937478	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0019976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	178	365	0	ENST00000373344.5:c.3270_3271del	p.Lys1091GlufsTer20	p.K1091Efs*20	ENST00000373344	NM_000489.3	1090	gaGAag/gaag																																																																														
INPPL1	0	MSKCC	GRCh37	11	71941023	71941023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	128	1031	0	ENST00000298229.2:c.899C>T	p.Ser300Phe	p.S300F	ENST00000298229	NM_001567.3	300	tCc/tTc																																																																														
ATM	0	MSKCC	GRCh37	11	108164127	108164127	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	85	615	0	ENST00000278616.4:c.4699G>C	p.Asp1567His	p.D1567H	ENST00000278616	NM_000051.3	1567	Gac/Cac																																																																														
KMT2A	0	MSKCC	GRCh37	11	118380765	118380765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	97	721	0	ENST00000534358.1:c.11003C>T	p.Pro3668Leu	p.P3668L	ENST00000534358	NM_005933.3	3668	cCc/cTc																																																																														
GLI1	0	MSKCC	GRCh37	12	57864417	57864417	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	528	861	0	ENST00000228682.2:c.1895del	p.Asn632MetfsTer87	p.N632Mfs*87	ENST00000228682	NM_005269.2	632	Aat/at																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872054	35872054	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	476	650	0	ENST00000216797.5:c.559C>G	p.Leu187Val	p.L187V	ENST00000216797	NM_020529.2	187	Cta/Gta																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43705453	43705453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	140	856	0	ENST00000382044.4:c.5169G>C	p.Gln1723His	p.Q1723H	ENST00000382044	NM_001141980.1	1723	caG/caC																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778575	3778575	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	289	762	0	ENST00000262367.5:c.6473A>T	p.Gln2158Leu	p.Q2158L	ENST00000262367	NM_004380.2	2158	cAg/cTg																																																																														
PALB2	0	MSKCC	GRCh37	16	23632768	23632768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	93	761	0	ENST00000261584.4:c.3028G>A	p.Glu1010Lys	p.E1010K	ENST00000261584	NM_024675.3	1010	Gag/Aag																																																																														
PALB2	0	MSKCC	GRCh37	16	23646626	23646626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	105	646	1	ENST00000261584.4:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000261584	NM_024675.3	414	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	547	750	1	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59761481	59761481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	63	541	0	ENST00000259008.2:c.2926G>A	p.Glu976Lys	p.E976K	ENST00000259008	NM_032043.2	976	Gaa/Aaa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266796	198266796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	487	805	0	ENST00000335508.6:c.2136G>T	p.Leu712Phe	p.L712F	ENST00000335508	NM_012433.2	712	ttG/ttT																																																																														
SETD2	0	MSKCC	GRCh37	3	47155457	47155457	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	240	654	0	ENST00000409792.3:c.4624A>T	p.Arg1542Ter	p.R1542*	ENST00000409792	NM_014159.6	1542	Aga/Tga																																																																														
MITF	0	MSKCC	GRCh37	3	70014360	70014360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	388	753	0	ENST00000352241.4:c.1524G>C	p.Arg508Ser	p.R508S	ENST00000352241	NM_198159.2	508	agG/agC																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967290	134967290	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	221	826	1	ENST00000398015.3:c.2629A>T	p.Thr877Ser	p.T877S	ENST00000398015	NM_004441.4	877	Acc/Tcc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149498409	149498409	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	181	757	0	ENST00000261799.4:c.2805G>C	p.Glu935Asp	p.E935D	ENST00000261799	NM_002609.3	935	gaG/gaC																																																																														
IKZF1	0	MSKCC	GRCh37	7	50459484	50459484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	267	570	0	ENST00000331340.3:c.773C>T	p.Ser258Leu	p.S258L	ENST00000331340	NM_006060.4	258	tCa/tTa																																																																														
JAK2	0	MSKCC	GRCh37	9	5054762	5054762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	88	571	0	ENST00000381652.3:c.814G>A	p.Val272Ile	p.V272I	ENST00000381652	NM_004972.3	272	Gta/Ata																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	437	641	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	437	641	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc																																																																														
TRAF2	0	MSKCC	GRCh37	9	139814758	139814758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	204	913	0	ENST00000247668.2:c.751G>T	p.Val251Leu	p.V251L	ENST00000247668	NM_021138.3	251	Gtg/Ttg																																																																														
MED12	0	MSKCC	GRCh37	X	70352710	70352710	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	158	659	0	ENST00000374080.3:c.4431C>G	p.Ser1477Arg	p.S1477R	ENST00000374080		1477	agC/agG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0019980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	85	824	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	173	769	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0019980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	135	730	4	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589581	67589583	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0019980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	85	670	0	ENST00000274335.5:c.1345_1347del	p.Leu449del	p.L449del	ENST00000274335		448	aaATTa/aaa																																																																														
SOX17	0	MSKCC	GRCh37	8	55372036	55372037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	37	766	0	ENST00000297316.4:c.730dup	p.Asp244GlyfsTer121	p.D244Gfs*121	ENST00000297316	NM_022454.3	242	-/G																																																																														
EGFR	0	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0019981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	994	785	2	ENST00000275493.2:c.2314_2319dupCCCCAC	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0019981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	225	563	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
FLT1	0	MSKCC	GRCh37	13	29012462	29012462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	277	740	0	ENST00000282397.4:c.409G>A	p.Glu137Lys	p.E137K	ENST00000282397	NM_002019.4	137	Gag/Aag																																																																														
FLCN	0	MSKCC	GRCh37	17	17118350	17118350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1703	188	1064	1	ENST00000285071.4:c.1487C>T	p.Ser496Phe	p.S496F	ENST00000285071	NM_144997.5	496	tCt/tTt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	59	734	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt																																																																														
SESN2	0	MSKCC	GRCh37	1	28599303	28599303	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	58	868	0	ENST00000253063.3:c.749G>A	p.Gly250Glu	p.G250E	ENST00000253063	NM_031459.4	250	gGg/gAg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120479951	120479951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	74	796	0	ENST00000256646.2:c.3476A>G	p.Gln1159Arg	p.Q1159R	ENST00000256646	NM_024408.3	1159	cAg/cGg																																																																														
IKBKE	0	MSKCC	GRCh37	1	206658577	206658577	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	61	652	0	ENST00000367120.3:c.1550A>T	p.Gln517Leu	p.Q517L	ENST00000367120	NM_014002.3	517	cAg/cTg																																																																														
ATM	0	MSKCC	GRCh37	11	108236085	108236085	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	61	757	0	ENST00000278616.4:c.9021A>T	p.Glu3007Asp	p.E3007D	ENST00000278616	NM_000051.3	3007	gaA/gaT																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18544075	18544075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	35	507	0	ENST00000266497.5:c.1892G>T	p.Gly631Val	p.G631V	ENST00000266497		631	gGg/gTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110437356	110437356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	29	163	0	ENST00000375856.3:c.1045G>C	p.Ala349Pro	p.A349P	ENST00000375856	NM_003749.2	349	Gcc/Ccc																																																																														
CD276	0	MSKCC	GRCh37	15	73996248	73996248	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	16	198	0	ENST00000318443.5:c.982C>T	p.Gln328Ter	p.Q328*	ENST00000318443	NM_001024736.1	328	Cag/Tag																																																																														
SMAD2	0	MSKCC	GRCh37	18	45394747	45394747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	80	700	1	ENST00000262160.6:c.602del	p.Pro201GlnfsTer37	p.P201Qfs*37	ENST00000262160	NM_005901.5	201	cCa/ca																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185165599	185165599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	38	620	0	ENST00000265026.3:c.874G>A	p.Ala292Thr	p.A292T	ENST00000265026	NM_004721.4	292	Gcg/Acg																																																																														
AGO2	0	MSKCC	GRCh37	8	141554338	141554338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	79	977	0	ENST00000220592.5:c.1813del	p.Asp605MetfsTer90	p.D605Mfs*90	ENST00000220592	NM_012154.3	605	Gat/at																																																																														
PTPRD	0	MSKCC	GRCh37	9	8504275	8504275	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	47	675	0	ENST00000356435.5:c.1808G>C	p.Arg603Thr	p.R603T	ENST00000356435		603	aGa/aCa																																																																														
RBM10	0	MSKCC	GRCh37	X	47045030	47045030	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0019982-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	92	960	1	ENST00000329236.7:c.2121+1G>T		p.X707_splice	ENST00000329236	NM_001204466.1	707																																																																															
TP53	0	MSKCC	GRCh37	17	7576888	7576888	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0019987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	145	897	1	ENST00000269305.4:c.958A>T	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	320	Aag/Tag																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0019987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	86	552	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
KMT2A	0	MSKCC	GRCh37	11	118368660	118368660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	135	519	0	ENST00000534358.1:c.5674C>T	p.Arg1892Cys	p.R1892C	ENST00000534358	NM_005933.3	1892	Cgt/Tgt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060903	38060904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0019987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	106	554	0	ENST00000250448.2:c.1084_1085dup	p.Gly363ProfsTer27	p.G363Pfs*27	ENST00000250448	NM_004496.3	362	tcc/tcTCc																																																																														
CASP8	0	MSKCC	GRCh37	2	202131462	202131462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	58	758	0	ENST00000358485.4:c.430G>A	p.Glu144Lys	p.E144K	ENST00000358485	NM_001080125.1	144	Gag/Aag																																																																														
EPHB1	0	MSKCC	GRCh37	3	134960080	134960080	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1042786		P-0019988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	47	997	2	ENST00000398015.3:c.2437G>A	p.Val813Ile	p.V813I	ENST00000398015	NM_004441.4	813	Gtc/Atc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123239530	123239530	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	57	1153	2	ENST00000358487.5:c.2307C>A	p.Tyr769Ter	p.Y769*	ENST00000358487	NM_000141.4	769	taC/taA																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	60	999	0	ENST00000267101.3:c.850G>C	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Cga																																																																														
FGFR2	0	MSKCC	GRCh37	10	123243224	123243225	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0019988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	47	1093	0	ENST00000358487.5:c.2288_2289del	p.Leu763HisfsTer4	p.L763Hfs*4	ENST00000358487	NM_000141.4	763	cTC/c																																																																														
PGR	0	MSKCC	GRCh37	11	100999024	100999024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	38	783	0	ENST00000325455.5:c.778G>A	p.Ala260Thr	p.A260T	ENST00000325455	NM_001202474.3	260	Gcg/Acg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900206	101900206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	35	665	0	ENST00000374994.4:c.640G>A	p.Gly214Ser	p.G214S	ENST00000374994	NM_004612.2	214	Ggt/Agt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929273	44929274	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0019988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	52	602	0	ENST00000377967.4:c.2375_2376del	p.Val792GlyfsTer6	p.V792Gfs*6	ENST00000377967	NM_021140.2	791	aaTGtg/aatg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	206	568	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	268	706	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
CARD11	0	MSKCC	GRCh37	7	2976706	2976706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	222	521	0	ENST00000396946.4:c.1306C>T	p.Arg436Trp	p.R436W	ENST00000396946	NM_032415.4	436	Cgg/Tgg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468071	50468071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	36	460	0	ENST00000331340.3:c.1306G>A	p.Asp436Asn	p.D436N	ENST00000331340	NM_006060.4	436	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7579401	7579401	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	241	758	0	ENST00000269305.4:c.286del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	Tct/ct																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612974	228612974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	153	461	0	ENST00000366696.1:c.53G>A	p.Arg18His	p.R18H	ENST00000366696	NM_003493.2	18	cGc/cAc																																																																														
TSC2	0	MSKCC	GRCh37	16	2121936	2121936	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	138	678	1	ENST00000219476.3:c.2097+1G>T		p.X699_splice	ENST00000219476	NM_000548.3	699																																																																															
APC	0	MSKCC	GRCh37	5	112175511	112175512	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	212	504	0	ENST00000257430.4:c.4221_4222del	p.Ser1407ArgfsTer15	p.S1407Rfs*15	ENST00000257430	NM_000038.5	1407	aGT/a																																																																														
ROS1	0	MSKCC	GRCh37	6	117725526	117725526	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	38	622	0	ENST00000368508.3:c.355T>G	p.Trp119Gly	p.W119G	ENST00000368508	NM_002944.2	119	Tgg/Ggg																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128268639	128268639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	277	757	1	ENST00000265960.3:c.1016G>A	p.Ser339Asn	p.S339N	ENST00000265960	NM_001006617.1	339	aGc/aAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	491	895	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
MTOR	0	MSKCC	GRCh37	1	11187799	11187799	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	187	801	0	ENST00000361445.4:c.6098A>G	p.Glu2033Gly	p.E2033G	ENST00000361445	NM_004958.3	2033	gAg/gGg																																																																														
RRAGC	0	MSKCC	GRCh37	1	39325149	39325149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1841	201	804	1	ENST00000373001.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000373001	NM_022157.3	57	gCt/gTt																																																																														
BRD4	0	MSKCC	GRCh37	19	15349967	15349967	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1272	192	770	0	ENST00000263377.2:c.3685C>G	p.Arg1229Gly	p.R1229G	ENST00000263377	NM_058243.2	1229	Cgc/Ggc																																																																														
PRKCI	0	MSKCC	GRCh37	3	170020843	170020844	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0019991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	172	440	0	ENST00000295797.4:c.1719_1720delinsTT	p.Lys573_Ile574delinsAsnPhe	p.K573_I574delinsNF	ENST00000295797	NM_002740.5	573	aaGAtt/aaTTtt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0019993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	384	665	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89720819	89720819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	189	279	0	ENST00000371953.3:c.970G>A	p.Asp324Asn	p.D324N	ENST00000371953	NM_000314.4	324	Gat/Aat																																																																														
PTEN	0	MSKCC	GRCh37	10	89720840	89720840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	175	322	0	ENST00000371953.3:c.991G>A	p.Asp331Asn	p.D331N	ENST00000371953	NM_000314.4	331	Gac/Aac																																																																														
RB1	0	MSKCC	GRCh37	13	48941630	48941630	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0019993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	308	370	0	ENST00000267163.4:c.940G>T	p.Val314Phe	p.V314F	ENST00000267163	NM_000321.2	314	Gtt/Ttt																																																																														
KIT	0	MSKCC	GRCh37	4	55593597	55593602	+	inframe_deletion	In_Frame_Del	DEL	GTACAG	GTACAG	-			P-0019993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	646	635	0	ENST00000288135.5:c.1663_1668del	p.Val555_Gln556del	p.V555_Q556del	ENST00000288135	NM_000222.2	555	GTACAG/-																																																																														
AMER1	0	MSKCC	GRCh37	X	63410313	63410313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	402	419	1	ENST00000330258.3:c.2854C>A	p.Pro952Thr	p.P952T	ENST00000330258	NM_152424.3	952	Ccc/Acc																																																																														
PTEN	0	MSKCC	GRCh37	10	89725042	89725042	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0019994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	30	309	0	ENST00000371953.3:c.1027-2A>G		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0019994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	65	403	1	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591140	67591141	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0019994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	56	501	0	ENST00000274335.5:c.1735dup	p.Gln579ProfsTer23	p.Q579Pfs*23	ENST00000274335		578	gac/gaCc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105634	27105635	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0019994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	95	581	0	ENST00000324856.7:c.5246_5247dup	p.Phe1750GlyfsTer21	p.F1750Gfs*21	ENST00000324856	NM_006015.4	1749	agg/aGGgg																																																																														
PTEN	0	MSKCC	GRCh37	10	89624283	89624284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0019994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	105	568	0	ENST00000371953.3:c.59dup	p.Phe21IlefsTer23	p.F21Ifs*23	ENST00000371953	NM_000314.4	19	-/G																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259259	89259259	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	31	521	0	ENST00000336596.2:c.403T>C	p.Phe135Leu	p.F135L	ENST00000336596	NM_005233.5	135	Ttt/Ctt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157469820	157469820	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	104	725	0	ENST00000346085.5:c.2616del	p.Gly873ValfsTer41	p.G873Vfs*41	ENST00000346085	NM_020732.3	872	Ccc/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	192	536	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	161	478	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	35	343	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	67	463	6	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	59	350	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	174	708	3	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101911535	101911535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	109	472	1	ENST00000374994.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000374994	NM_004612.2	487	cGg/cAg																																																																														
CIC	0	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	166	722	1	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502466	186502468	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	58	314	0	ENST00000323963.5:c.193_195del	p.Ile65del	p.I65del	ENST00000323963		63	gcTATt/gct																																																																														
ACVR1	0	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	80	384	0	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088659	27088659	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	171	747	1	ENST00000324856.7:c.2272delC	p.Gln758ArgfsTer75	p.Q758Rfs*75	ENST00000324856	NM_006015.4	756	aaC/aa																																																																														
ATM	0	MSKCC	GRCh37	11	108196879	108196880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	74	462	0	ENST00000278616.4:c.6908dupA	p.Glu2304GlyfsTer69	p.E2304Gfs*69	ENST00000278616	NM_000051.3	2301	gca/gcAa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348560	89348561	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	155	770	0	ENST00000301030.4:c.4389_4390del	p.Lys1464ThrfsTer89	p.K1464Tfs*89	ENST00000301030	NM_001256183.1	1463	gaGAaa/gaaa																																																																														
AXIN1	0	MSKCC	GRCh37	16	354393	354393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	47	601	0	ENST00000262320.3:c.1165G>A	p.Ala389Thr	p.A389T	ENST00000262320	NM_003502.3	389	Gcg/Acg																																																																														
FLCN	0	MSKCC	GRCh37	17	17131403	17131403	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	135	556	0	ENST00000285071.4:c.49delC	p.Arg17AlafsTer38	p.R17Afs*38	ENST00000285071	NM_144997.5	17	Cgc/gc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212989591	212989592	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	20	333	0	ENST00000342788.4:c.119_120delCT	p.Ser40Ter	p.S40*	ENST00000342788	NM_005235.2	40	tCT/t																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9776072	9776072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	108	604	1	ENST00000377346.4:c.536G>T	p.Gly179Val	p.G179V	ENST00000377346	NM_005026.3	179	gGg/gTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105551	27105551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	112	427	0	ENST00000324856.7:c.5162G>C	p.Arg1721Pro	p.R1721P	ENST00000324856	NM_006015.4	1721	cGa/cCa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692796	89692797	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACC			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	113	372	0	ENST00000371953.3:c.281_283dup	p.Asn94_Pro95insHis	p.N94_P95insH	ENST00000371953	NM_000314.4	94	aac/aACCac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49424970	49424970	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783691		P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	144	503	0	ENST00000301067.7:c.13518del	p.Ser4507AlafsTer12	p.S4507Afs*12	ENST00000301067	NM_003482.3	4506	ccC/cc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103504478	103504478	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	57	304	0	ENST00000355739.4:c.99T>G	p.Ile33Met	p.I33M	ENST00000355739	NM_000123.3	33	atT/atG																																																																														
CTCF	0	MSKCC	GRCh37	16	67663351	67663351	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	92	512	0	ENST00000264010.4:c.1756del	p.Glu586LysfsTer45	p.E586Kfs*45	ENST00000264010	NM_006565.3	584	gaG/ga																																																																														
FANCA	0	MSKCC	GRCh37	16	89805669	89805669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	51	494	1	ENST00000389301.3:c.4039G>A	p.Ala1347Thr	p.A1347T	ENST00000389301	NM_000135.2	1347	Gcc/Acc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868196	37868196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	123	570	1	ENST00000269571.5:c.917C>T	p.Thr306Met	p.T306M	ENST00000269571		306	aCg/aTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10246955	10246955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	143	461	0	ENST00000340748.4:c.4450G>A	p.Ala1484Thr	p.A1484T	ENST00000340748		1484	Gcc/Acc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18266865	18266865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	79	637	2	ENST00000222254.8:c.176G>A	p.Gly59Asp	p.G59D	ENST00000222254	NM_005027.3	59	gGc/gAc																																																																														
IDH1	0	MSKCC	GRCh37	2	209104629	209104629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	123	465	0	ENST00000345146.2:c.949C>T	p.Arg317Cys	p.R317C	ENST00000345146	NM_005896.2	317	Cgc/Tgc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021205	31021205	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	84	544	0	ENST00000375687.4:c.1204C>T	p.Arg402Ter	p.R402*	ENST00000375687	NM_015338.5	402	Cga/Tga																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185146583	185146583	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142468620		P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	127	496	1	ENST00000265026.3:c.214G>A	p.Val72Ile	p.V72I	ENST00000265026	NM_004721.4	72	Gta/Ata																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589573	67589592	+	protein_altering_variant	In_Frame_Del	DEL	GGGAAAAAATTACATGAATA	GGGAAAAAATTACATGAATA	AATAT			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	38	404	2	ENST00000274335.5:c.1336_1355delinsAATAT	p.Gly446_Tyr452delinsAsnIle	p.G446_Y452delinsNI	ENST00000274335		446	GGGAAAAAATTACATGAATAt/AATATt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67593287	67593287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	95	347	0	ENST00000274335.5:c.2033G>T	p.Gly678Val	p.G678V	ENST00000274335		678	gGc/gTc																																																																														
TAP2	0	MSKCC	GRCh37	6	32800475	32800475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	265	801	0	ENST00000374899.4:c.1072G>A	p.Ala358Thr	p.A358T	ENST00000374899	NM_018833.2	358	Gcc/Acc																																																																														
AGO2	0	MSKCC	GRCh37	8	141549487	141549487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	102	376	1	ENST00000220592.5:c.2101G>A	p.Gly701Arg	p.G701R	ENST00000220592	NM_012154.3	701	Ggg/Agg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528665	8528665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	101	378	0	ENST00000356435.5:c.467A>G	p.Glu156Gly	p.E156G	ENST00000356435		156	gAa/gGa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226001	53226001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	193	765	1	ENST00000375401.3:c.2848A>G	p.Met950Val	p.M950V	ENST00000375401	NM_004187.3	950	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	113	584	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	132	802	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	229	533	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
NF1	0	MSKCC	GRCh37	17	29559089	29559089	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	39	83	0	ENST00000358273.4:c.3198-2A>G		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																															
RBM10	0	MSKCC	GRCh37	X	47045190	47045190	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	150	337	2	ENST00000329236.7:c.2196+1G>T		p.X732_splice	ENST00000329236	NM_001204466.1	732																																																																															
GRIN2A	0	MSKCC	GRCh37	16	9857344	9857344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	205	447	0	ENST00000330684.3:c.4057A>G	p.Arg1353Gly	p.R1353G	ENST00000330684	NM_001134407.1	1353	Agg/Ggg																																																																														
XPO1	0	MSKCC	GRCh37	2	61721109	61721109	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	463	703	0	ENST00000401558.2:c.1165T>G	p.Ser389Ala	p.S389A	ENST00000401558	NM_003400.3	389	Tct/Gct																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091121	29091121	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	346	722	0	ENST00000328354.6:c.1369G>T	p.Glu457Ter	p.E457*	ENST00000328354	NM_007194.3	457	Gag/Tag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66509100	66509100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	77	541	1	ENST00000273854.3:c.227T>A	p.Ile76Asn	p.I76N	ENST00000273854	NM_004439.5	76	aTt/aAt																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910333	29910384	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	GGCCGTCATGGCGCCCCGAACCCTCCTCCTGCTACTCTCGGGGGCCCTGGCC	GGCCGTCATGGCGCCCCGAACCCTCCTCCTGCTACTCTCGGGGGCCCTGGCC	-			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	217	752	0	ENST00000376809.5:c.3_54del	p.Met1_?18	p.M1_?18	ENST00000376809	NM_002116.7	1	atGGCCGTCATGGCGCCCCGAACCCTCCTCCTGCTACTCTCGGGGGCCCTGGCC/at																																																																														
TEK	0	MSKCC	GRCh37	9	27180315	27180315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	131	542	1	ENST00000380036.4:c.979C>T	p.Gln327Ter	p.Q327*	ENST00000380036	NM_000459.3	327	Caa/Taa																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	229	540	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696462	47696462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	346	448	0	ENST00000347630.2:c.361C>G	p.Arg121Gly	p.R121G	ENST00000347630	NM_001007230.1	121	Cgg/Ggg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	20	433	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
FUBP1	0	MSKCC	GRCh37	1	78433848	78433848	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	40	362	0	ENST00000370768.2:c.250+1del		p.X84_splice	ENST00000370768	NM_003902.3	84																																																																															
ATM	0	MSKCC	GRCh37	11	108236153	108236153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	45	605	2	ENST00000278616.4:c.9089G>T	p.Gly3030Val	p.G3030V	ENST00000278616	NM_000051.3	3030	gGa/gTa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972589	32972590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	43	464	0	ENST00000380152.3:c.9945dup	p.Glu3316ArgfsTer11	p.E3316Rfs*11	ENST00000380152		3313	-/A																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774943	73774943	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	29	364	0	ENST00000254810.4:c.230A>C	p.Gln77Pro	p.Q77P	ENST00000254810	NM_005324.3	77	cAg/cCg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600330	10600330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	42	509	0	ENST00000171111.5:c.1525G>C	p.Gly509Arg	p.G509R	ENST00000171111	NM_203500.1	509	Ggg/Cgg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31384598	31384598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	46	552	1	ENST00000328111.2:c.1300G>T	p.Gly434Cys	p.G434C	ENST00000328111	NM_006892.3	434	Ggc/Tgc																																																																														
KDR	0	MSKCC	GRCh37	4	55964318	55964318	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	34	379	0	ENST00000263923.4:c.2495A>G	p.Asp832Gly	p.D832G	ENST00000263923	NM_002253.2	832	gAc/gGc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874355	151874355	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	33	406	0	ENST00000262189.6:c.8183A>T	p.Lys2728Met	p.K2728M	ENST00000262189	NM_170606.2	2728	aAg/aTg																																																																														
SOX17	0	MSKCC	GRCh37	8	55372385	55372385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	49	747	3	ENST00000297316.4:c.1075G>T	p.Asp359Tyr	p.D359Y	ENST00000297316	NM_022454.3	359	Gac/Tac																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581351	48581351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	130	461	2	ENST00000342988.3:c.655G>A	p.Val219Met	p.V219M	ENST00000342988	NM_005359.5	219	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	179	744	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0020017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	113	614	0				ENST00000310581	NM_198253.2																																																																																
NOTCH1	0	MSKCC	GRCh37	9	139412282	139412282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	416	944	0	ENST00000277541.6:c.1363G>A	p.Glu455Lys	p.E455K	ENST00000277541	NM_017617.3	455	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	95	526	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	138	598	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	59	516	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936393		P-0020019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	43	333	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088795	27088795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	58	567	0	ENST00000324856.7:c.2404C>T	p.Gln802Ter	p.Q802*	ENST00000324856	NM_006015.4	802	Cag/Tag																																																																														
ERF	0	MSKCC	GRCh37	19	42754670	42754670	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	45	426	0	ENST00000222329.4:c.70T>A	p.Ser24Thr	p.S24T	ENST00000222329	NM_006494.2	24	Tca/Aca																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936103	178936103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	212	684	0	ENST00000263967.3:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000263967	NM_006218.2	549	Gat/Aat																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952152	178952159	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	AAAAGATA	AAAAGATA	-			P-0020020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	79	305	0	ENST00000263967.3:c.*1_*8delAAAGATAA		p.*1fs*	ENST00000263967	NM_006218.2	1069																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	119	437	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ERCC2	0	MSKCC	GRCh37	19	45872214	45872214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	66	563	0	ENST00000391945.4:c.220T>C	p.Ser74Pro	p.S74P	ENST00000391945	NM_000400.3	74	Tca/Cca																																																																														
PTEN	0	MSKCC	GRCh37	10	89717695	89717696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	67	488	0	ENST00000371953.3:c.723dupT	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	240	-/T																																																																														
RAD21	0	MSKCC	GRCh37	8	117859924	117859924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139935751		P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	131	251	0	ENST00000297338.2:c.1711C>T	p.Leu571Phe	p.L571F	ENST00000297338	NM_006265.2	571	Ctt/Ttt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72863714	72863716	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	144	561	0	ENST00000268489.5:c.3491_3493del	p.Ala1164del	p.A1164del	ENST00000268489	NM_006885.3	1164	gCTGat/gat																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351644	89351644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	87	666	0	ENST00000301030.4:c.1306G>A	p.Gly436Ser	p.G436S	ENST00000301030	NM_001256183.1	436	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7577088	7577104	+	protein_altering_variant	In_Frame_Del	DEL	TGCGCCGGTCTCTCCCA	TGCGCCGGTCTCTCCCA	GG			P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	161	653	4	ENST00000269305.4:c.834_850delinsCC	p.Gly279_Thr284delinsPro	p.G279_T284delinsP	ENST00000269305	NM_001126112.2	278	ccTGGGAGAGACCGGCGCAca/ccCCca																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981911	70981911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	73	636	1	ENST00000276594.2:c.185C>A	p.Ala62Asp	p.A62D	ENST00000276594	NM_024504.3	62	gCt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	97	349	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
TP53	0	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	232	841	1	ENST00000269305.4:c.395A>T	p.Lys132Met	p.K132M	ENST00000269305	NM_001126112.2	132	aAg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	259	528	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0020028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	59	651	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	40	499	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KLF4	0	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	43	886	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106497	27106498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	42	714	0	ENST00000324856.7:c.6109dup	p.Gln2037ProfsTer62	p.Q2037Pfs*62	ENST00000324856	NM_006015.4	2036	-/C																																																																														
RBM10	0	MSKCC	GRCh37	X	47041704	47041705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	59	391	0	ENST00000329236.7:c.1697dup	p.Thr567AspfsTer28	p.T567Dfs*28	ENST00000329236	NM_001204466.1	565	-/A																																																																														
CDH1	0	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	123	447	2	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	171	550	1	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099412	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAA	CAGCAGCAGCAGCAA	-			P-0020030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	44	368	0	ENST00000346085.5:c.363_377del	p.Gln127_Gln131del	p.Q127_Q131del	ENST00000346085	NM_020732.3	117	CAGCAGCAGCAGCAA/-																																																																														
CBFB	0	MSKCC	GRCh37	16	67070599	67070599	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	97	249	0	ENST00000412916.2:c.223G>T	p.Gly75Ter	p.G75*	ENST00000412916		75	Gga/Tga																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149500570	149500570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	147	413	0	ENST00000261799.4:c.2467G>A	p.Val823Ile	p.V823I	ENST00000261799	NM_002609.3	823	Gtc/Atc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874908	151874908	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	85	283	1	ENST00000262189.6:c.7630C>T	p.Gln2544Ter	p.Q2544*	ENST00000262189	NM_170606.2	2544	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	334	676	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0020036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	79	721	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420591	49420591	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	78	706	0	ENST00000301067.7:c.15158A>T	p.Asp5053Val	p.D5053V	ENST00000301067	NM_003482.3	5053	gAc/gTc																																																																														
MAPK3	0	MSKCC	GRCh37	16	30133238	30133238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	84	688	2	ENST00000263025.4:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000263025	NM_002746.2	87	cGg/cAg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346085	89346085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	15	91	0	ENST00000301030.4:c.6865G>A	p.Gly2289Ser	p.G2289S	ENST00000301030	NM_001256183.1	2289	Ggc/Agc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15968937	15968937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	46	545	0	ENST00000268712.3:c.4813G>T	p.Ala1605Ser	p.A1605S	ENST00000268712	NM_006311.3	1605	Gca/Tca																																																																														
INSR	0	MSKCC	GRCh37	19	7120639	7120641	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0020036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	57	699	0	ENST00000302850.5:c.3649_3651del	p.Ser1217del	p.S1217del	ENST00000302850	NM_000208.2	1217	TCT/-																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031999	26031999	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	35	438	0	ENST00000244661.2:c.290G>C	p.Cys97Ser	p.C97S	ENST00000244661	NM_003537.3	97	tGt/tCt																																																																														
PNRC1	0	MSKCC	GRCh37	6	89793546	89793546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	182	500	0	ENST00000336032.3:c.615G>C	p.Leu205Phe	p.L205F	ENST00000336032	NM_006813.2	205	ttG/ttC																																																																														
ROS1	0	MSKCC	GRCh37	6	117709129	117709129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	206	535	0	ENST00000368508.3:c.1828T>C	p.Tyr610His	p.Y610H	ENST00000368508	NM_002944.2	610	Tat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	37	436	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871116	12871116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	28	259	0	ENST00000228872.4:c.343G>T	p.Ala115Ser	p.A115S	ENST00000228872	NM_004064.3	115	Gcg/Tcg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18478007	18478007	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	54	635	0	ENST00000266497.5:c.1247A>T	p.His416Leu	p.H416L	ENST00000266497		416	cAc/cTc																																																																														
STK11	0	MSKCC	GRCh37	19	1207062	1207091	+	inframe_deletion	In_Frame_Del	DEL	GATGGGGGACCTGCTGGGGGAAGGCTCTTA	GATGGGGGACCTGCTGGGGGAAGGCTCTTA	-			P-0020037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	74	663	2	ENST00000326873.7:c.150_179del	p.Met51_Tyr60del	p.M51_Y60del	ENST00000326873	NM_000455.4	50	ctGATGGGGGACCTGCTGGGGGAAGGCTCTTAc/ctc																																																																														
JAK3	0	MSKCC	GRCh37	19	17941343	17941343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	52	609	1	ENST00000458235.1:c.3065C>A	p.Thr1022Asn	p.T1022N	ENST00000458235	NM_000215.3	1022	aCc/aAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47041349	47041349	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	54	627	1	ENST00000329236.7:c.1460-1G>T		p.X487_splice	ENST00000329236	NM_001204466.1	487																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	54	1026	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	38	999	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	38	999	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	38	999	1	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	122	1061	1	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																																																														
CCND2	0	MSKCC	GRCh37	12	4387995	4387995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	113	950	2	ENST00000261254.3:c.481G>A	p.Glu161Lys	p.E161K	ENST00000261254	NM_001759.3	161	Gag/Aag																																																																														
NF1	0	MSKCC	GRCh37	17	29509579	29509579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	42	1296	1	ENST00000358273.4:c.784C>T	p.Arg262Cys	p.R262C	ENST00000358273	NM_001042492.2	262	Cgt/Tgt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522336	176522336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	33	1059	0	ENST00000292408.4:c.1525G>A	p.Ala509Thr	p.A509T	ENST00000292408	NM_213647.1	509	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0020040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	293	987	2	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	222	930	0	ENST00000269305.4:c.518T>C	p.Val173Ala	p.V173A	ENST00000269305	NM_001126112.2	173	gTg/gCg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	87	1116	1	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444219	49444222	+	frameshift_variant	Frame_Shift_Del	DEL	ACGG	ACGG	-			P-0020040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	309	1227	0	ENST00000301067.7:c.3149_3152del	p.Ser1050PhefsTer5	p.S1050Ffs*5	ENST00000301067	NM_003482.3	1050	tCCGTt/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0020041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	193	486	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
FANCC	0	MSKCC	GRCh37	9	97887392	97887392	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	392	619	1	ENST00000289081.3:c.972A>C	p.Glu324Asp	p.E324D	ENST00000289081	NM_000136.2	324	gaA/gaC																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178938931	178938931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	69	469	0	ENST00000263967.3:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000263967	NM_006218.2	725	Gat/Aat																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266711	198266711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0020043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	75	557	0	ENST00000335508.6:c.2221A>G	p.Lys741Glu	p.K741E	ENST00000335508	NM_012433.2	741	Aag/Gag																																																																														
GATA3	0	MSKCC	GRCh37	10	8115637	8115791	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGATTAACAGACCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCAT	GAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGATTAACAGACCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCAT	-			P-0020043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	58	106	0	ENST00000346208.3:c.1048-63_1139del		p.X350_splice	ENST00000346208		350																																																																															
WT1	0	MSKCC	GRCh37	11	32413566	32413566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	9	483	0	ENST00000332351.3:c.1384C>T	p.Arg462Trp	p.R462W	ENST00000332351	NM_024426.4	462	Cgg/Tgg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928067	178928093	+	inframe_deletion	In_Frame_Del	DEL	CCTCATGGATTAGAAGATTTGCTGAAC	CCTCATGGATTAGAAGATTTGCTGAAC	-			P-0020043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	20	660	0	ENST00000263967.3:c.1348_1374del	p.His450_Pro458del	p.H450_P458del	ENST00000263967	NM_006218.2	449	CCTCATGGATTAGAAGATTTGCTGAAC/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	274	504	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	187	815	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112221	115112221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	170	491	0	ENST00000257566.3:c.1519C>A	p.Leu507Met	p.L507M	ENST00000257566	NM_016569.3	507	Ctg/Atg																																																																														
SOS1	0	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	137	450	1	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
PLCG2	0	MSKCC	GRCh37	16	81969797	81969797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	114	605	0	ENST00000359376.3:c.2866C>T	p.Arg956Cys	p.R956C	ENST00000359376	NM_002661.3	956	Cgc/Tgc																																																																														
IDH2	0	MSKCC	GRCh37	15	90645522	90645522	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	18	130	0	ENST00000330062.3:c.101A>T	p.Gln34Leu	p.Q34L	ENST00000330062	NM_002168.2	34	cAg/cTg																																																																														
CBL	0	MSKCC	GRCh37	11	119170321	119170321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	105	358	0	ENST00000264033.4:c.2551G>A	p.Ala851Thr	p.A851T	ENST00000264033	NM_005188.3	851	Gcc/Acc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72923632	72923632	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	39	511	0	ENST00000268489.5:c.3446C>A	p.Pro1149Gln	p.P1149Q	ENST00000268489	NM_006885.3	1149	cCa/cAa																																																																														
STAT3	0	MSKCC	GRCh37	17	40489457	40489467	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCTAGCCGA	TTTCTAGCCGA	-			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	98	463	1	ENST00000264657.5:c.783_793del	p.Asp261GlufsTer18	p.D261Efs*18	ENST00000264657	NM_139276.2	261	gaTCGGCTAGAAAac/gaac																																																																														
SETD2	0	MSKCC	GRCh37	3	47144875	47144875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	178	621	1	ENST00000409792.3:c.4878C>A	p.Phe1626Leu	p.F1626L	ENST00000409792	NM_014159.6	1626	ttC/ttA																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526605	31526605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	139	554	1	ENST00000344624.3:c.435G>A	p.Met145Ile	p.M145I	ENST00000344624		145	atG/atA																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967841	93967841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	108	610	3	ENST00000369303.4:c.2086C>A	p.His696Asn	p.H696N	ENST00000369303	NM_004440.3	696	Cat/Aat																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450282	50450282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	137	619	0	ENST00000331340.3:c.466C>A	p.Gln156Lys	p.Q156K	ENST00000331340	NM_006060.4	156	Cag/Aag																																																																														
DUSP4	0	MSKCC	GRCh37	8	29194611	29194611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	54	839	0	ENST00000240100.2:c.1117G>A	p.Gly373Ser	p.G373S	ENST00000240100	NM_001394.6	373	Ggc/Agc																																																																														
RBM10	0	MSKCC	GRCh37	X	47038562	47038562	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	123	391	0	ENST00000329236.7:c.493G>C	p.Glu165Gln	p.E165Q	ENST00000329236	NM_001204466.1	165	Gag/Cag																																																																														
FLT3	0	MSKCC	GRCh37	13	28622419	28622419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	27	668	1	ENST00000241453.7:c.1198G>A	p.Gly400Arg	p.G400R	ENST00000241453	NM_004119.2	400	Gga/Aga																																																																														
TP53	0	MSKCC	GRCh37	17	7579547	7579557	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGACAGCAT	GGGGACAGCAT	-			P-0020045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	104	1017	0	ENST00000269305.4:c.130_140del	p.Met44GlyfsTer4	p.M44Gfs*4	ENST00000269305	NM_001126112.2	44	ATGCTGTCCCCg/g																																																																														
TERT	0	MSKCC	GRCh37	5	1293589	1293589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	162	1096	2	ENST00000310581.5:c.1412G>A	p.Arg471Gln	p.R471Q	ENST00000310581	NM_198253.2	471	cGg/cAg																																																																														
ETV1	0	MSKCC	GRCh37	7	13949264	13949264	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	28	515	0	ENST00000405192.2:c.864del	p.Lys288AsnfsTer32	p.K288Nfs*32	ENST00000405192	NM_001163147.1	288	aaA/aa																																																																														
GNAQ	0	MSKCC	GRCh37	9	80412470	80412470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28764015		P-0020045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	42	592	0	ENST00000286548.4:c.571G>A	p.Glu191Lys	p.E191K	ENST00000286548	NM_002072.3	191	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	216	555	1				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	320	594	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
GPS2	0	MSKCC	GRCh37	17	7217236	7217236	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	305	597	0	ENST00000380728.2:c.469delC	p.Gln157LysfsTer188	p.Q157Kfs*188	ENST00000380728		157	Caa/aa																																																																														
CUL3	0	MSKCC	GRCh37	2	225371717	225371717	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	181	565	0	ENST00000264414.4:c.887T>G	p.Leu296Arg	p.L296R	ENST00000264414	NM_003590.4	296	cTt/cGt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55131146	55131146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	67	597	0	ENST00000257290.5:c.689C>T	p.Thr230Met	p.T230M	ENST00000257290	NM_006206.4	230	aCg/aTg																																																																														
TAP2	0	MSKCC	GRCh37	6	32800593	32800607	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGCACTTCCTGGAA	AAGCACTTCCTGGAA	-			P-0020047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	53	637	0	ENST00000374899.4:c.946-6_954del		p.X316_splice	ENST00000374899	NM_018833.2	316																																																																															
HGF	0	MSKCC	GRCh37	7	81358920	81358920	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0020047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	154	439	0	ENST00000222390.5:c.1040+1G>C		p.X347_splice	ENST00000222390	NM_000601.4	347																																																																															
KDM6A	0	MSKCC	GRCh37	X	44928929	44928929	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	256	475	0	ENST00000377967.4:c.2029C>G	p.Gln677Glu	p.Q677E	ENST00000377967	NM_021140.2	677	Cag/Gag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929161	44929182	+	frameshift_variant	Frame_Shift_Del	DEL	TGACGGCAGATGCTGTTTGCAG	TGACGGCAGATGCTGTTTGCAG	-			P-0020047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	291	552	0	ENST00000377967.4:c.2262_2283del	p.Met754IlefsTer13	p.M754Ifs*13	ENST00000377967	NM_021140.2	754	aTGACGGCAGATGCTGTTTGCAGt/at																																																																														
KDM6A	0	MSKCC	GRCh37	X	44945142	44945157	+	frameshift_variant	Frame_Shift_Del	DEL	AACATAAATATTGGCC	AACATAAATATTGGCC	GTTATTCA			P-0020047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	158	615	3	ENST00000377967.4:c.3466_3481delinsGTTATTCA	p.Asn1156ValfsTer5	p.N1156Vfs*5	ENST00000377967	NM_021140.2	1156	AACATAAATATTGGCCca/GTTATTCAca																																																																														
AR	0	MSKCC	GRCh37	X	66766544	66766544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	338	796	1	ENST00000374690.3:c.1556G>T	p.Cys519Phe	p.C519F	ENST00000374690	NM_000044.3	519	tGt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	73	707	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	27	485	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TBX3	0	MSKCC	GRCh37	12	115117321	115117321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	119	474	0	ENST00000257566.3:c.853C>T	p.Gln285Ter	p.Q285*	ENST00000257566	NM_016569.3	285	Cag/Tag																																																																														
CDH1	0	MSKCC	GRCh37	16	68844171	68844172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	185	798	1	ENST00000261769.5:c.759_760insA	p.Asp254ArgfsTer4	p.D254Rfs*4	ENST00000261769	NM_004360.3	253	-/A																																																																														
KMT2C	0	MSKCC	GRCh37	7	151884933	151884933	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	24	368	0	ENST00000262189.6:c.4661-1G>A		p.X1554_splice	ENST00000262189	NM_170606.2	1554																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0020050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	185	899	6	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021128	31021128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	183	745	0	ENST00000375687.4:c.1127G>A	p.Gly376Asp	p.G376D	ENST00000375687	NM_015338.5	376	gGc/gAc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265696	41266154	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCA	ATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCA	-			P-0020052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	32	113	0	ENST00000349496.5:c.13+126_153del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32188760	32188760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	101	777	0	ENST00000375023.3:c.794C>T	p.Pro265Leu	p.P265L	ENST00000375023	NM_004557.3	265	cCc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577128	7577128	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	418	817	0	ENST00000269305.4:c.810T>G	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	ttT/ttG																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469527	25469527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	295	888	0	ENST00000264709.3:c.1241T>C	p.Phe414Ser	p.F414S	ENST00000264709	NM_175629.2	414	tTc/tCc																																																																														
HGF	0	MSKCC	GRCh37	7	81336664	81336664	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	152	583	0	ENST00000222390.5:c.1558G>T	p.Gly520Ter	p.G520*	ENST00000222390	NM_000601.4	520	Gga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	197	792	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0020059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	192	643	2	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
CTCF	0	MSKCC	GRCh37	16	67645875	67645875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	211	745	2	ENST00000264010.4:c.803G>T	p.Cys268Phe	p.C268F	ENST00000264010	NM_006565.3	268	tGt/tTt																																																																														
BAP1	0	MSKCC	GRCh37	3	52443595	52443595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	162	661	1	ENST00000460680.1:c.97T>C	p.Tyr33His	p.Y33H	ENST00000460680	NM_004656.3	33	Tac/Cac																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032136	26032136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	138	535	0	ENST00000244661.2:c.153G>C	p.Glu51Asp	p.E51D	ENST00000244661	NM_003537.3	51	gaG/gaC																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158407	26158407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	265	1189	5	ENST00000289316.2:c.10C>T	p.Pro4Ser	p.P4S	ENST00000289316	NM_138720.2	4	Cct/Tct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	765	728	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	310	800	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097629	27097631	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0020060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	179	872	2	ENST00000324856.7:c.3220_3222del	p.Arg1074del	p.R1074del	ENST00000324856	NM_006015.4	1073	tGGCgg/tgg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15984036	15984048	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTTCCCTAAGAA	TGTTCCCTAAGAA	-			P-0020060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	122	338	0	ENST00000268712.3:c.3178-7_3183del		p.X1060_splice	ENST00000268712	NM_006311.3	1060																																																																															
EPAS1	0	MSKCC	GRCh37	2	46525053	46525053	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0020060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	323	894	2	ENST00000263734.3:c.3G>A	p.Met1?	p.M1?	ENST00000263734	NM_001430.4	1	atG/atA																																																																														
MED12	0	MSKCC	GRCh37	X	70361221	70361221	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0020060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	41	943	0	ENST00000374080.3:c.6408+1G>A		p.X2136_splice	ENST00000374080		2136																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	238	673	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	0	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	180	332	0	ENST00000324856.7:c.413C>G	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	525	1017	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	42	760	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
JAK2	0	MSKCC	GRCh37	9	5126343	5126343	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41316003		P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	251	512	0	ENST00000381652.3:c.3188G>A	p.Arg1063His	p.R1063H	ENST00000381652	NM_004972.3	1063	cGt/cAt																																																																														
RB1	0	MSKCC	GRCh37	13	48937001	48937001	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	406	677	0	ENST00000267163.4:c.769C>T	p.Gln257Ter	p.Q257*	ENST00000267163	NM_000321.2	257	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577079	7577079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	657	1026	0	ENST00000269305.4:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000269305	NM_001126112.2	287	Gag/Cag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969322	44969322	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	254	255	0	ENST00000377967.4:c.4006-2A>T		p.X1336_splice	ENST00000377967	NM_021140.2	1336																																																																															
LATS1	0	MSKCC	GRCh37	6	150001124	150001124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	427	830	0	ENST00000253339.5:c.2480G>C	p.Arg827Thr	p.R827T	ENST00000253339		827	aGa/aCa																																																																														
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	507	841	0	ENST00000269305.4:c.730G>C	p.Gly244Arg	p.G244R	ENST00000269305	NM_001126112.2	244	Ggc/Cgc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252859	36252859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	318	548	0	ENST00000300305.3:c.503G>A	p.Gly168Glu	p.G168E	ENST00000300305		168	gGa/gAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057908	27057908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	487	937	1	ENST00000324856.7:c.1616C>T	p.Ser539Leu	p.S539L	ENST00000324856	NM_006015.4	539	tCg/tTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49442953	49442953	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	416	929	1	ENST00000301067.7:c.3955del	p.His1319MetfsTer11	p.H1319Mfs*11	ENST00000301067	NM_003482.3	1319	Cat/at																																																																														
SETD8	0	MSKCC	GRCh37	12	123873984	123873984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	69	85	1	ENST00000330479.4:c.15G>T	p.Arg5Ser	p.R5S	ENST00000330479	NM_020382.3	5	agG/agT																																																																														
PMS1	0	MSKCC	GRCh37	2	190708762	190708762	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	504	891	0	ENST00000441310.2:c.655A>T	p.Met219Leu	p.M219L	ENST00000441310	NM_000534.4	219	Atg/Ttg																																																																														
MDC1	0	MSKCC	GRCh37	6	30681458	30681458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	63	685	0	ENST00000376406.3:c.554G>T	p.Arg185Met	p.R185M	ENST00000376406	NM_014641.2	185	aGg/aTg																																																																														
LATS1	0	MSKCC	GRCh37	6	150001436	150001436	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	521	995	0	ENST00000253339.5:c.2168G>C	p.Arg723Thr	p.R723T	ENST00000253339		723	aGa/aCa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157525053	157525053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	359	585	0	ENST00000346085.5:c.4948G>A	p.Glu1650Lys	p.E1650K	ENST00000346085	NM_020732.3	1650	Gag/Aag																																																																														
SOX17	0	MSKCC	GRCh37	8	55371708	55371709	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	317	866	3	ENST00000297316.4:c.398_399delinsAA	p.Pro133Gln	p.P133Q	ENST00000297316	NM_022454.3	133	cCC/cAA																																																																														
NTRK2	0	MSKCC	GRCh37	9	87339154	87339154	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	108	593	0	ENST00000277120.3:c.736A>G	p.Thr246Ala	p.T246A	ENST00000277120		246	Aca/Gca																																																																														
MED12	0	MSKCC	GRCh37	X	70349949	70349949	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	469	539	0	ENST00000374080.3:c.3932T>G	p.Val1311Gly	p.V1311G	ENST00000374080		1311	gTg/gGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	162	1014	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	111	990	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	213	649	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974746	21974746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	37	282	0	ENST00000304494.5:c.81G>C	p.Glu27Asp	p.E27D	ENST00000304494	NM_000077.4	27	gaG/gaC																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974746	21974746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	37	282	0	ENST00000304494.5:c.81G>C	p.Glu27Asp	p.E27D	ENST00000304494	NM_000077.4	27	gaG/gaC																																																																														
RAD54L	0	MSKCC	GRCh37	1	46738436	46738436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1144	97	714	0	ENST00000371975.4:c.1337C>A	p.Ser446Tyr	p.S446Y	ENST00000371975	NM_003579.3	446	tCc/tAc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118348787	118348787	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	120	414	0	ENST00000534358.1:c.3440A>T	p.Lys1147Met	p.K1147M	ENST00000534358	NM_005933.3	1147	aAg/aTg																																																																														
LATS2	0	MSKCC	GRCh37	13	21562600	21562600	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	40	324	1	ENST00000382592.4:c.1319T>A	p.Ile440Asn	p.I440N	ENST00000382592	NM_014572.2	440	aTc/aAc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061312	38061313	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	85	763	4	ENST00000250448.2:c.676_677delinsTT	p.Asp226Phe	p.D226F	ENST00000250448	NM_004496.3	226	GAc/TTc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347374	89347374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	118	772	0	ENST00000301030.4:c.5576C>T	p.Ser1859Leu	p.S1859L	ENST00000301030	NM_001256183.1	1859	tCg/tTg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984731	11984731	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	10	262	0	ENST00000353533.5:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000353533	NM_003010.3	93	Caa/Taa																																																																														
AXL	0	MSKCC	GRCh37	19	41748805	41748805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	253	856	0	ENST00000301178.4:c.1330C>T	p.Pro444Ser	p.P444S	ENST00000301178	NM_021913.4	444	Cct/Tct																																																																														
ALK	0	MSKCC	GRCh37	2	29456502	29456502	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	224	682	0	ENST00000389048.3:c.2416C>G	p.Arg806Gly	p.R806G	ENST00000389048	NM_004304.4	806	Cgt/Ggt																																																																														
NCOA3	0	MSKCC	GRCh37	20	46266457	46266457	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	45	741	0	ENST00000371998.3:c.2442T>G	p.Asn814Lys	p.N814K	ENST00000371998		814	aaT/aaG																																																																														
PBRM1	0	MSKCC	GRCh37	3	52595862	52595862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	113	630	2	ENST00000394830.3:c.4053C>A	p.Asp1351Glu	p.D1351E	ENST00000394830	NM_018313.4	1351	gaC/gaA																																																																														
TERT	0	MSKCC	GRCh37	5	1295384	1295384	+	upstream_gene_variant	5'Flank	SNP	C	C	G			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	43	302	0				ENST00000310581	NM_198253.2																																																																																
TAP1	0	MSKCC	GRCh37	6	32815311	32815328	+	inframe_deletion	In_Frame_Del	DEL	GTCCAGAGATGAAACTAT	GTCCAGAGATGAAACTAT	-			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	99	914	0	ENST00000354258.4:c.2045_2062del	p.His682_Gly687del	p.H682_G687del	ENST00000354258	NM_000593.5	682	cATAGTTTCATCTCTGGACtc/ctc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8389276	8389276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	53	764	0	ENST00000356435.5:c.4342A>G	p.Ser1448Gly	p.S1448G	ENST00000356435		1448	Agt/Ggt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164860	36164872	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCGGGGAACTG	GCGCGGGGAACTG	-			P-0020070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	195	1023	0	ENST00000300305.3:c.1003_1015del	p.Gln335CysfsTer255	p.Q335Cfs*255	ENST00000300305		335	CAGTTCCCCGCGCtg/tg																																																																														
TP53	0	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	276	1091	1	ENST00000269305.4:c.440T>A	p.Val147Asp	p.V147D	ENST00000269305	NM_001126112.2	147	gTt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591846	48591846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	75	683	0	ENST00000342988.3:c.1009G>A	p.Glu337Lys	p.E337K	ENST00000342988	NM_005359.5	337	Gag/Aag																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164898	36164899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGGTGCCGCTGCAGGG			P-0020070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	129	841	0	ENST00000300305.3:c.968-8_976dup	p.Asp326AlafsTer8	p.D326Afs*8	ENST00000300305		326	gac/gCCCTGCAGCGGCACCCGac																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259490	89259490	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	98	657	0	ENST00000336596.2:c.634T>A	p.Phe212Ile	p.F212I	ENST00000336596	NM_005233.5	212	Ttt/Att																																																																														
KDM6A	0	MSKCC	GRCh37	X	44919396	44919396	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	145	221	0	ENST00000377967.4:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000377967	NM_021140.2	442	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	450	727	2	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	173	544	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RAC1	0	MSKCC	GRCh37	7	6439807	6439807	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	95	588	0	ENST00000356142.4:c.333T>A	p.Asn111Lys	p.N111K	ENST00000356142	NM_018890.3	111	aaT/aaA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	121	747	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	175	878	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	138	833	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	111	512	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																																																														
APC	0	MSKCC	GRCh37	5	112175749	112175753	+	frameshift_variant	Frame_Shift_Del	DEL	TACTT	TACTT	-			P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	164	420	0	ENST00000257430.4:c.4460_4464del	p.Thr1487IlefsTer25	p.T1487Ifs*25	ENST00000257430	NM_000038.5	1486	gaTACTTta/gata																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212450	5212450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	65	879	0	ENST00000357368.4:c.4667C>T	p.Pro1556Leu	p.P1556L	ENST00000357368	NM_002850.3	1556	cCg/cTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720678	89720678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	67	311	0	ENST00000371953.3:c.829A>G	p.Thr277Ala	p.T277A	ENST00000371953	NM_000314.4	277	Aca/Gca																																																																														
MRE11A	0	MSKCC	GRCh37	11	94200987	94200987	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	119	546	0	ENST00000323929.3:c.1090C>T	p.Arg364Ter	p.R364*	ENST00000323929	NM_005591.3	364	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	99	536	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974809	21974809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	23	118	0	ENST00000304494.5:c.18del	p.Ser7AlafsTer19	p.S7Afs*19	ENST00000304494	NM_000077.4	6	ggG/gg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974809	21974809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	23	118	0	ENST00000304494.5:c.18del	p.Ser7AlafsTer19	p.S7Afs*19	ENST00000304494	NM_000077.4	6	ggG/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7578181	7578181	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	178	855	0	ENST00000269305.4:c.668delC	p.Pro223LeufsTer24	p.P223Lfs*24	ENST00000269305	NM_001126112.2	223	cCt/ct																																																																														
SOX2	0	MSKCC	GRCh37	3	181430258	181430258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	52	494	0	ENST00000325404.1:c.110G>A	p.Ser37Asn	p.S37N	ENST00000325404	NM_003106.3	37	aGc/aAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	249	624	0	ENST00000269305.4:c.734G>C	p.Gly245Ala	p.G245A	ENST00000269305	NM_001126112.2	245	gGc/gCc																																																																														
FGF4	0	MSKCC	GRCh37	11	69589698	69589698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	61	85	1	ENST00000168712.1:c.155C>T	p.Ala52Val	p.A52V	ENST00000168712	NM_002007.2	52	gCg/gTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0020078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	221	437	0	ENST00000371953.3:c.48T>G	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taG																																																																														
TBX3	0	MSKCC	GRCh37	12	115114131	115114132	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0020078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	199	520	0	ENST00000257566.3:c.1085_1086insCC	p.Ser363HisfsTer270	p.S363Hfs*270	ENST00000257566	NM_016569.3	362	aca/acCCa																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872018	35872018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	93	535	0	ENST00000216797.5:c.595G>C	p.Val199Leu	p.V199L	ENST00000216797	NM_020529.2	199	Gtg/Ctg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209457	98209457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	231	554	0	ENST00000331920.6:c.4081G>A	p.Val1361Met	p.V1361M	ENST00000331920	NM_000264.3	1361	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	152	623	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390873	139390873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	244	884	2	ENST00000277541.6:c.7318C>T	p.Gln2440Ter	p.Q2440*	ENST00000277541	NM_017617.3	2440	Cag/Tag																																																																														
AKT3	0	MSKCC	GRCh37	1	243708856	243708856	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	214	742	0	ENST00000263826.5:c.1207A>G	p.Ser403Gly	p.S403G	ENST00000263826	NM_005465.4	403	Agt/Ggt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40733227	40733227	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	64	720	0	ENST00000373198.4:c.3579A>T	p.Gln1193His	p.Q1193H	ENST00000373198	NM_133170.3	1193	caA/caT																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265861	41266231	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAA	GAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAA	-			P-0020081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	27	13	0	ENST00000349496.5:c.14-154_230del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
TGFBR1	0	MSKCC	GRCh37	9	101904892	101904893	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0020081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	105	497	0	ENST00000374994.4:c.881_882del	p.Arg294IlefsTer38	p.R294Ifs*38	ENST00000374994	NM_004612.2	294	AGa/a																																																																														
SPEN	0	MSKCC	GRCh37	1	16264489	16264490	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	154	779	0	ENST00000375759.3:c.10692_10693delinsTT	p.Arg3565Ter	p.R3565*	ENST00000375759	NM_015001.2	3564	gcCCga/gcTTga																																																																														
MPL	0	MSKCC	GRCh37	1	43805194	43805194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	225	864	0	ENST00000372470.3:c.644C>A	p.Thr215Lys	p.T215K	ENST00000372470	NM_005373.2	215	aCa/aAa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458221	120458221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	334	781	0	ENST00000256646.2:c.7124C>T	p.Pro2375Leu	p.P2375L	ENST00000256646	NM_024408.3	2375	cCt/cTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717705	89717705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	171	601	0	ENST00000371953.3:c.730C>T	p.Pro244Ser	p.P244S	ENST00000371953	NM_000314.4	244	Cct/Tct																																																																														
FGFR2	0	MSKCC	GRCh37	10	123245041	123245041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	140	620	1	ENST00000358487.5:c.2063C>T	p.Ser688Phe	p.S688F	ENST00000358487	NM_000141.4	688	tCc/tTc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123247618	123247618	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	137	580	1	ENST00000358487.5:c.1873C>T	p.Arg625Ter	p.R625*	ENST00000358487	NM_000141.4	625	Cga/Tga																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380349	14380349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	111	467	0	ENST00000256196.4:c.68del	p.Gly23AlafsTer18	p.G23Afs*18	ENST00000256196		23	gGc/gc																																																																														
EED	0	MSKCC	GRCh37	11	85977242	85977242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	33	480	0	ENST00000263360.6:c.844C>T	p.Pro282Ser	p.P282S	ENST00000263360	NM_003797.3	282	Cca/Tca																																																																														
ATM	0	MSKCC	GRCh37	11	108143500	108143500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	40	651	0	ENST00000278616.4:c.3205C>T	p.Pro1069Ser	p.P1069S	ENST00000278616	NM_000051.3	1069	Cct/Tct																																																																														
CHEK1	0	MSKCC	GRCh37	11	125525198	125525198	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	126	554	0	ENST00000428830.2:c.1414T>G	p.Trp472Gly	p.W472G	ENST00000428830	NM_001114121.2	472	Tgg/Ggg																																																																														
KRAS	0	MSKCC	GRCh37	12	25380309	25380309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	261	640	0	ENST00000256078.4:c.149C>T	p.Thr50Ile	p.T50I	ENST00000256078	NM_033360.2	50	aCc/aTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49428010	49428010	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	548	753	0	ENST00000301067.7:c.10580T>G	p.Val3527Gly	p.V3527G	ENST00000301067	NM_003482.3	3527	gTg/gGg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112244	115112244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	258	270	2	ENST00000257566.3:c.1496C>T	p.Pro499Leu	p.P499L	ENST00000257566	NM_016569.3	499	cCt/cTt																																																																														
FLT3	0	MSKCC	GRCh37	13	28599037	28599037	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	129	705	0	ENST00000241453.7:c.2251C>T	p.Gln751Ter	p.Q751*	ENST00000241453	NM_004119.2	751	Caa/Taa																																																																														
FLT1	0	MSKCC	GRCh37	13	28883029	28883029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	141	666	0	ENST00000282397.4:c.3671G>A	p.Arg1224Lys	p.R1224K	ENST00000282397	NM_002019.4	1224	aGa/aAa																																																																														
FLT1	0	MSKCC	GRCh37	13	29001354	29001354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	110	506	0	ENST00000282397.4:c.1378C>T	p.Pro460Ser	p.P460S	ENST00000282397	NM_002019.4	460	Cct/Tct																																																																														
FLT1	0	MSKCC	GRCh37	13	29004206	29004206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	103	520	0	ENST00000282397.4:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000282397	NM_002019.4	363	Ccc/Tcc																																																																														
TSHR	0	MSKCC	GRCh37	14	81606081	81606081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	160	783	0	ENST00000298171.2:c.751G>A	p.Glu251Lys	p.E251K	ENST00000298171	NM_000369.2	251	Gaa/Aaa																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727471	66727471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	180	620	0	ENST00000307102.5:c.187C>A	p.Leu63Met	p.L63M	ENST00000307102	NM_002755.3	63	Ctg/Atg																																																																														
IDH2	0	MSKCC	GRCh37	15	90630480	90630481	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	318	729	0	ENST00000330062.3:c.830_831del	p.Asp277ValfsTer5	p.D277Vfs*5	ENST00000330062	NM_002168.2	277	gAC/g																																																																														
BLM	0	MSKCC	GRCh37	15	91304363	91304363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	175	684	0	ENST00000355112.3:c.1760T>C	p.Ile587Thr	p.I587T	ENST00000355112	NM_000057.2	587	aTc/aCc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857127	9857127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	60	416	0	ENST00000330684.3:c.4274C>T	p.Ser1425Leu	p.S1425L	ENST00000330684	NM_001134407.1	1425	tCg/tTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923318	9923318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	261	650	0	ENST00000330684.3:c.1969G>A	p.Glu657Lys	p.E657K	ENST00000330684	NM_001134407.1	657	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578540	7578563	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGGGCAGGGGAGTACTGTAGGAA	GAGGGCAGGGGAGTACTGTAGGAA	-			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	755	1095	1	ENST00000269305.4:c.376-9_390del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
NCOR1	0	MSKCC	GRCh37	17	15971403	15971403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	710	743	0	ENST00000268712.3:c.4546G>A	p.Glu1516Lys	p.E1516K	ENST00000268712	NM_006311.3	1516	Gaa/Aaa																																																																														
NF1	0	MSKCC	GRCh37	17	29557909	29557909	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	42	121	1	ENST00000358273.4:c.3163C>T	p.Gln1055Ter	p.Q1055*	ENST00000358273	NM_001042492.2	1055	Caa/Taa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244375	5244376	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	426	878	1	ENST00000357368.4:c.1106_1107delinsTT	p.Ser369Phe	p.S369F	ENST00000357368	NM_002850.3	369	tCC/tTT																																																																														
INSR	0	MSKCC	GRCh37	19	7166335	7166335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	362	894	0	ENST00000302850.5:c.1691C>T	p.Pro564Leu	p.P564L	ENST00000302850	NM_000208.2	564	cCc/cTc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10273392	10273392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	428	702	2	ENST00000340748.4:c.911C>T	p.Pro304Leu	p.P304L	ENST00000340748		304	cCt/cTt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276815	15276815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	378	890	0	ENST00000263388.2:c.5450C>T	p.Ser1817Leu	p.S1817L	ENST00000263388	NM_000435.2	1817	tCa/tTa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15292436	15292436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	469	842	3	ENST00000263388.2:c.2743G>A	p.Gly915Ser	p.G915S	ENST00000263388	NM_000435.2	915	Ggc/Agc																																																																														
CCNE1	0	MSKCC	GRCh37	19	30311630	30311630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	173	501	0	ENST00000262643.3:c.484C>T	p.His162Tyr	p.H162Y	ENST00000262643	NM_001238.2	162	Cac/Tac																																																																														
EPCAM	0	MSKCC	GRCh37	2	47606962	47606962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	132	650	0	ENST00000263735.4:c.712G>A	p.Glu238Lys	p.E238K	ENST00000263735	NM_002354.2	238	Gaa/Aaa																																																																														
CUL3	0	MSKCC	GRCh37	2	225370816	225370816	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	276	633	0	ENST00000264414.4:c.1063T>C	p.Phe355Leu	p.F355L	ENST00000264414	NM_003590.4	355	Ttc/Ctc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40709539	40709539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	312	804	0	ENST00000373198.4:c.4363G>A	p.Glu1455Lys	p.E1455K	ENST00000373198	NM_133170.3	1455	Gaa/Aaa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40710534	40710534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	281	726	0	ENST00000373198.4:c.4317G>A	p.Met1439Ile	p.M1439I	ENST00000373198	NM_133170.3	1439	atG/atA																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713349	40713349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	350	849	0	ENST00000373198.4:c.4166G>A	p.Arg1389Lys	p.R1389K	ENST00000373198	NM_133170.3	1389	aGg/aAg																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41076955	41076955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs724159838		P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	236	645	1	ENST00000373198.4:c.1465C>T	p.Pro489Ser	p.P489S	ENST00000373198	NM_133170.3	489	Cct/Tct																																																																														
PTPRT	0	MSKCC	GRCh37	20	41420093	41420093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	164	341	0	ENST00000373198.4:c.228G>A	p.Met76Ile	p.M76I	ENST00000373198	NM_133170.3	76	atG/atA																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264449	46264449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	217	441	0	ENST00000371998.3:c.1496C>T	p.Pro499Leu	p.P499L	ENST00000371998		499	cCt/cTt																																																																														
ERG	0	MSKCC	GRCh37	21	39762919	39762919	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	149	684	0	ENST00000288319.7:c.917C>T	p.Pro306Leu	p.P306L	ENST00000288319	NM_182918.3	306	cCa/cTa																																																																														
EP300	0	MSKCC	GRCh37	22	41536181	41536181	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	676	762	0	ENST00000263253.7:c.1798T>A	p.Leu600Ile	p.L600I	ENST00000263253	NM_001429.3	600	Tta/Ata																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259301	89259301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	337	495	2	ENST00000336596.2:c.445G>A	p.Asp149Asn	p.D149N	ENST00000336596	NM_005233.5	149	Gat/Aat																																																																														
GSK3B	0	MSKCC	GRCh37	3	119595289	119595289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	145	469	0	ENST00000316626.5:c.880C>T	p.Pro294Ser	p.P294S	ENST00000316626		294	Cct/Tct																																																																														
TP63	0	MSKCC	GRCh37	3	189526145	189526145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	347	833	2	ENST00000264731.3:c.409G>A	p.Asp137Asn	p.D137N	ENST00000264731	NM_003722.4	137	Gac/Aac																																																																														
TP63	0	MSKCC	GRCh37	3	189585621	189585621	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	247	543	0	ENST00000264731.3:c.883-1G>A		p.X295_splice	ENST00000264731	NM_003722.4	295																																																																															
FAT1	0	MSKCC	GRCh37	4	187510187	187510187	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	122	650	1	ENST00000441802.2:c.13326C>A	p.Phe4442Leu	p.F4442L	ENST00000441802	NM_005245.3	4442	ttC/ttA																																																																														
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	189	488	3				ENST00000310581	NM_198253.2																																																																																
IL7R	0	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	196	530	1	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
IL7R	0	MSKCC	GRCh37	5	35874636	35874636	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	224	459	0	ENST00000303115.3:c.792G>A	p.Trp264Ter	p.W264*	ENST00000303115	NM_002185.3	264	tgG/tgA																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459714	149459714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	357	870	1	ENST00000286301.3:c.493C>T	p.His165Tyr	p.H165Y	ENST00000286301	NM_005211.3	165	Cac/Tac																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149515237	149515237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	394	815	1	ENST00000261799.4:c.245C>T	p.Ser82Phe	p.S82F	ENST00000261799	NM_002609.3	82	tCc/tTc																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858353	27858353	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138060838		P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	159	643	0	ENST00000359303.2:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000359303	NM_003535.2	73	cGa/cAa																																																																														
DAXX	0	MSKCC	GRCh37	6	33287475	33287475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	323	651	1	ENST00000374542.5:c.1622C>T	p.Ser541Phe	p.S541F	ENST00000374542	NM_001141970.1	541	tCc/tTc																																																																														
ROS1	0	MSKCC	GRCh37	6	117709028	117709028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	331	736	0	ENST00000368508.3:c.1929G>A	p.Met643Ile	p.M643I	ENST00000368508	NM_002944.2	643	atG/atA																																																																														
ROS1	0	MSKCC	GRCh37	6	117718190	117718190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	286	693	0	ENST00000368508.3:c.667G>A	p.Gly223Arg	p.G223R	ENST00000368508	NM_002944.2	223	Gga/Aga																																																																														
BRAF	0	MSKCC	GRCh37	7	140481408	140481408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	236	552	0	ENST00000288602.6:c.1400C>T	p.Ser467Leu	p.S467L	ENST00000288602	NM_004333.4	467	tCa/tTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878458	151878458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	350	786	0	ENST00000262189.6:c.6487C>T	p.Pro2163Ser	p.P2163S	ENST00000262189	NM_170606.2	2163	Cct/Tct																																																																														
PREX2	0	MSKCC	GRCh37	8	69028124	69028124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	543	990	0	ENST00000288368.4:c.3283G>A	p.Glu1095Lys	p.E1095K	ENST00000288368	NM_024870.2	1095	Gaa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8436635	8436635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	125	815	2	ENST00000356435.5:c.4043G>A	p.Arg1348Lys	p.R1348K	ENST00000356435		1348	aGa/aAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499707	8499707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	117	711	0	ENST00000356435.5:c.2262G>A	p.Met754Ile	p.M754I	ENST00000356435		754	atG/atA																																																																														
TEK	0	MSKCC	GRCh37	9	27185596	27185596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	372	818	1	ENST00000380036.4:c.1296G>A	p.Met432Ile	p.M432I	ENST00000380036	NM_000459.3	432	atG/atA																																																																														
TSC1	0	MSKCC	GRCh37	9	135801081	135801081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	236	611	2	ENST00000298552.3:c.256C>T	p.Arg86Cys	p.R86C	ENST00000298552	NM_001162426.1	86	Cgt/Tgt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7978975	7978975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	178	606	0	ENST00000319144.4:c.1592C>T	p.Pro531Leu	p.P531L	ENST00000319144	NM_001139.2	531	cCg/cTg																																																																														
LMO1	0	MSKCC	GRCh37	11	8248579	8248579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	177	763	1	ENST00000335790.3:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000335790	NM_002315.2	103	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	868	666	0	ENST00000269305.4:c.770T>G	p.Leu257Arg	p.L257R	ENST00000269305	NM_001126112.2	257	cTg/cGg																																																																														
NF1	0	MSKCC	GRCh37	17	29560231	29560231	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0020084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	164	224	0	ENST00000358273.4:c.3708G>A	p.Trp1236Ter	p.W1236*	ENST00000358273	NM_001042492.2	1236	tgG/tgA																																																																														
DOT1L	0	MSKCC	GRCh37	19	2223350	2223350	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	572	818	0	ENST00000398665.3:c.3461C>G	p.Pro1154Arg	p.P1154R	ENST00000398665	NM_032482.2	1154	cCt/cGt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10291527	10291528	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0020084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	343	620	3	ENST00000340748.4:c.151_152delinsAT	p.Glu51Ile	p.E51I	ENST00000340748		51	GAa/ATa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176517503	176517503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	524	795	1	ENST00000292408.4:c.204G>T	p.Lys68Asn	p.K68N	ENST00000292408	NM_213647.1	68	aaG/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	64	560	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575199	48575199	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0020085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	48	299	0	ENST00000342988.3:c.393T>G	p.Tyr131Ter	p.Y131*	ENST00000342988	NM_005359.5	131	taT/taG																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21968236	21968239	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GGAT	GGAT	-			P-0020085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	55	482	0	ENST00000304494.5:c.460_463del	p.Ile154ProfsTer38	p.I154Pfs*38	ENST00000304494	NM_000077.4	154	ATCCcc/cc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21968236	21968239	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GGAT	GGAT	-			P-0020085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	55	482	0	ENST00000304494.5:c.460_463del	p.Ile154ProfsTer38	p.I154Pfs*38	ENST00000304494	NM_000077.4	154	ATCCcc/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	114	302	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	0	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	253	508	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																																																														
CDKN1A	1026	MSKCC	GRCh37	6	36652198	36652199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	220	537	0	ENST00000244741.5:c.322dup	p.Glu108GlyfsTer21	p.E108Gfs*21	ENST00000244741	NM_000389.4	107	gag/gaGg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481620	56481620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	112	519	0	ENST00000267101.3:c.655T>C	p.Phe219Leu	p.F219L	ENST00000267101	NM_001982.3	219	Ttt/Ctt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106882	27106882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	93	439	0	ENST00000324856.7:c.6493G>A	p.Glu2165Lys	p.E2165K	ENST00000324856	NM_006015.4	2165	Gag/Aag																																																																														
CSF3R	0	MSKCC	GRCh37	1	36938228	36938228	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	130	639	0	ENST00000361632.4:c.733C>G	p.Gln245Glu	p.Q245E	ENST00000361632		245	Cag/Gag																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165510	118165510	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	41	204	0	ENST00000369448.3:c.20G>C	p.Cys7Ser	p.C7S	ENST00000369448	NM_017709.3	7	tGt/tCt																																																																														
ARID2	0	MSKCC	GRCh37	12	46205208	46205208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	71	332	0	ENST00000334344.6:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000334344	NM_152641.2	98	Gaa/Caa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906448	32906475	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGCAAAGACCACATTGGAAAGTCAAT	GCTGCAAAGACCACATTGGAAAGTCAAT	-			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	79	494	0	ENST00000380152.3:c.835_862del	p.Cys279GlnfsTer4	p.C279Qfs*4	ENST00000380152		278	aGCTGCAAAGACCACATTGGAAAGTCAATg/ag																																																																														
MGA	0	MSKCC	GRCh37	15	41988523	41988523	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	169	668	2	ENST00000219905.7:c.1315G>C	p.Asp439His	p.D439H	ENST00000219905	NM_001164273.1	439	Gac/Cac																																																																														
TRAF7	0	MSKCC	GRCh37	16	2225341	2225341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	127	602	0	ENST00000326181.6:c.1426C>T	p.Arg476Trp	p.R476W	ENST00000326181	NM_032271.2	476	Cgg/Tgg																																																																														
CDK12	0	MSKCC	GRCh37	17	37650883	37650885	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	303	681	0	ENST00000447079.4:c.2359_2361del	p.Val787del	p.V787del	ENST00000447079	NM_015083.1	785	agTGTt/agt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533854	63533854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	109	398	0	ENST00000307078.5:c.1300G>A	p.Asp434Asn	p.D434N	ENST00000307078	NM_004655.3	434	Gac/Aac																																																																														
CALR	0	MSKCC	GRCh37	19	13049555	13049577	+	protein_altering_variant	In_Frame_Del	DEL	TCTACTTCAAGGAGCAGTTTCTG	TCTACTTCAAGGAGCAGTTTCTG	GC			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	34	569	2	ENST00000316448.5:c.62_84delinsGC	p.Val21_Leu28delinsGly	p.V21_L28delinsG	ENST00000316448	NM_004343.3	21	gTCTACTTCAAGGAGCAGTTTCTG/gGC																																																																														
APC	0	MSKCC	GRCh37	5	112173221	112173268	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATTTTGTGATCTCTTGATTTTATTTCAGGCAAATCCTAAGAGAGAAC	AATTTTGTGATCTCTTGATTTTATTTCAGGCAAATCCTAAGAGAGAAC	-			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	23	121	0	ENST00000257430.4:c.1959-27_1979del		p.X653_splice	ENST00000257430	NM_000038.5	653																																																																															
NSD1	0	MSKCC	GRCh37	5	176631232	176631232	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	114	472	0	ENST00000439151.2:c.1175T>A	p.Phe392Tyr	p.F392Y	ENST00000439151	NM_022455.4	392	tTc/tAc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652031	36652031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	154	699	0	ENST00000244741.5:c.153C>G	p.Phe51Leu	p.F51L	ENST00000244741	NM_000389.4	51	ttC/ttG																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120217	94120217	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	55	201	0	ENST00000369303.4:c.832+2T>G		p.X278_splice	ENST00000369303	NM_004440.3	278																																																																															
GNAQ	0	MSKCC	GRCh37	9	80336385	80336385	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	67	432	0	ENST00000286548.4:c.934A>G	p.Met312Val	p.M312V	ENST00000286548	NM_002072.3	312	Atg/Gtg																																																																														
GNAQ	0	MSKCC	GRCh37	9	80336417	80336417	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	51	333	0	ENST00000286548.4:c.902A>C	p.Asp301Ala	p.D301A	ENST00000286548	NM_002072.3	301	gAt/gCt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	195	561	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	97	374	1				ENST00000310581	NM_198253.2																																																																																
NF1	0	MSKCC	GRCh37	17	29665042	29665042	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	120	428	0	ENST00000358273.4:c.6705-1G>T		p.X2235_splice	ENST00000358273	NM_001042492.2	2235																																																																															
DNMT3A	0	MSKCC	GRCh37	2	25470018	25470018	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	91	435	0	ENST00000264709.3:c.1024G>T	p.Glu342Ter	p.E342*	ENST00000264709	NM_175629.2	342	Gag/Tag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399545	139399545	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	154	551	0	ENST00000277541.6:c.4598A>T	p.Asp1533Val	p.D1533V	ENST00000277541	NM_017617.3	1533	gAc/gTc																																																																														
CDH1	0	MSKCC	GRCh37	16	68857322	68857322	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	66	488	0	ENST00000261769.5:c.1957A>T	p.Lys653Ter	p.K653*	ENST00000261769	NM_004360.3	653	Aag/Tag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15971420	15971420	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	86	598	0	ENST00000268712.3:c.4529del	p.Asn1510ThrfsTer12	p.N1510Tfs*12	ENST00000268712	NM_006311.3	1510	aAc/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	157	804	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	108	992	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
TERT	0	MSKCC	GRCh37	5	1268645	1268645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	115	1049	1	ENST00000310581.5:c.2572C>T	p.Arg858Trp	p.R858W	ENST00000310581	NM_198253.2	858	Cgg/Tgg																																																																														
ARID2	196528	MSKCC	GRCh37	12	46211656	46211656	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	101	471	0	ENST00000334344.6:c.625del	p.Val209CysfsTer6	p.V209Cfs*6	ENST00000334344	NM_152641.2	208	Ggg/gg																																																																														
ARID2	0	MSKCC	GRCh37	12	46215255	46215271	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TAGAGACTTCGTTAAGG	TAGAGACTTCGTTAAGG	-			P-0020103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	123	636	0	ENST00000334344.6:c.692_705+3del		p.X231_splice	ENST00000334344	NM_152641.2	231																																																																															
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0020107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	884	961	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
KIT	0	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			433	802	713	0	ENST00000288135.5:c.2466T>G	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaG																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032401	10032401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	258	360	0	ENST00000330684.3:c.422C>A	p.Thr141Lys	p.T141K	ENST00000330684	NM_001134407.1	141	aCg/aAg																																																																														
MGA	0	MSKCC	GRCh37	15	42035031	42035031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020108-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	462	847	0	ENST00000219905.7:c.4873G>A	p.Glu1625Lys	p.E1625K	ENST00000219905	NM_001164273.1	1625	Gaa/Aaa																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664873	138664902	+	inframe_deletion	In_Frame_Del	DEL	GCCGCAGCTGCTGCAGCCGCTGCGGCTGCC	GCCGCAGCTGCTGCAGCCGCTGCGGCTGCC	-			P-0020111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	37	149	0	ENST00000330315.3:c.663_692del	p.Ala225_Ala234del	p.A225_A234del	ENST00000330315	NM_023067.3	221	gcGGCAGCCGCAGCGGCTGCAGCAGCTGCGGCt/gct																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906958	32906958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	87	530	0	ENST00000380152.3:c.1343G>A	p.Arg448His	p.R448H	ENST00000380152		448	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0020112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	501	679	2	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43712647	43712647	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	135	927	2	ENST00000382044.4:c.4537C>T	p.Arg1513Ter	p.R1513*	ENST00000382044	NM_001141980.1	1513	Cga/Tga																																																																														
EZH2	0	MSKCC	GRCh37	7	148543635	148543635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	111	642	0	ENST00000320356.2:c.173A>G	p.Gln58Arg	p.Q58R	ENST00000320356	NM_004456.4	58	cAa/cGa																																																																														
EP300	0	MSKCC	GRCh37	22	41566522	41566522	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs200897987		P-0020113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	198	622	0	ENST00000263253.7:c.4399T>A	p.Tyr1467Asn	p.Y1467N	ENST00000263253	NM_001429.3	1467	Tac/Aac																																																																														
PTEN	0	MSKCC	GRCh37	10	89692979	89692979	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	128	675	0	ENST00000371953.3:c.463T>A	p.Tyr155Asn	p.Y155N	ENST00000371953	NM_000314.4	155	Tat/Aat																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111881717	111881717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	60	612	0	ENST00000393256.3:c.394+1G>T		p.X132_splice	ENST00000393256	NM_006538.4	132																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	265	780	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
XPO1	0	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	116	667	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	65	396	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																														
TP63	0	MSKCC	GRCh37	3	189526071	189526071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	106	657	3	ENST00000264731.3:c.335C>T	p.Thr112Met	p.T112M	ENST00000264731	NM_003722.4	112	aCg/aTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445566	49445566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	181	1103	1	ENST00000301067.7:c.1900C>T	p.Pro634Ser	p.P634S	ENST00000301067	NM_003482.3	634	Cct/Tct																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727439	66727439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	79	581	0	ENST00000307102.5:c.155C>T	p.Ala52Val	p.A52V	ENST00000307102	NM_002755.3	52	gCc/gTc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778141	3778141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	140	1121	2	ENST00000262367.5:c.6907C>A	p.Gln2303Lys	p.Q2303K	ENST00000262367	NM_004380.2	2303	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0020115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	564	893	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MST1	0	MSKCC	GRCh37	3	49725207	49725207	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs71193817		P-0020116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	22	222	0	ENST00000449682.2:c.218G>A	p.Arg73His	p.R73H	ENST00000449682	NM_020998.3	73	cGc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0020119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	160	760	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	34	820	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																																																														
RB1	0	MSKCC	GRCh37	13	48916831	48916831	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	17	669	1	ENST00000267163.4:c.361C>T	p.Gln121Ter	p.Q121*	ENST00000267163	NM_000321.2	121	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	921	1112	1	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	651	1133	1	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
KDR	0	MSKCC	GRCh37	4	55953894	55953894	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	194	895	1	ENST00000263923.4:c.3542C>A	p.Ser1181Ter	p.S1181*	ENST00000263923	NM_002253.2	1181	tCa/tAa																																																																														
RB1	0	MSKCC	GRCh37	13	48919214	48919214	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	178	381	0	ENST00000267163.4:c.381-2A>G		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																															
FGF4	0	MSKCC	GRCh37	11	69588172	69588172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	555	1105	1	ENST00000168712.1:c.526G>T	p.Gly176Cys	p.G176C	ENST00000168712	NM_002007.2	176	Ggc/Tgc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156844417	156844417	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	300	1324	0	ENST00000524377.1:c.1250G>T	p.Gly417Val	p.G417V	ENST00000524377	NM_002529.3	417	gGg/gTg																																																																														
AKT3	0	MSKCC	GRCh37	1	243727117	243727117	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	203	924	0	ENST00000263826.5:c.853A>G	p.Ile285Val	p.I285V	ENST00000263826	NM_005465.4	285	Ata/Gta																																																																														
RRAS2	0	MSKCC	GRCh37	11	14317361	14317361	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	47	945	0	ENST00000256196.4:c.149C>G	p.Ser50Cys	p.S50C	ENST00000256196		50	tCt/tGt																																																																														
PGR	0	MSKCC	GRCh37	11	100922173	100922173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	164	869	1	ENST00000325455.5:c.2339C>A	p.Pro780His	p.P780H	ENST00000325455	NM_001202474.3	780	cCt/cAt																																																																														
KDM5A	0	MSKCC	GRCh37	12	493280	493280	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	218	1023	0	ENST00000399788.2:c.283G>C	p.Ala95Pro	p.A95P	ENST00000399788	NM_001042603.1	95	Gca/Cca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420793	49420793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	482	913	1	ENST00000301067.7:c.14956C>T	p.Arg4986Cys	p.R4986C	ENST00000301067	NM_003482.3	4986	Cgc/Tgc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56490607	56490607	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	191	893	2	ENST00000267101.3:c.2251C>T	p.Gln751Ter	p.Q751*	ENST00000267101	NM_001982.3	751	Cag/Tag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060990	38060990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	112	591	0	ENST00000250448.2:c.999G>T	p.Gln333His	p.Q333H	ENST00000250448	NM_004496.3	333	caG/caT																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748681	43748681	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	311	1318	1	ENST00000382044.4:c.2125C>T	p.Gln709Ter	p.Q709*	ENST00000382044	NM_001141980.1	709	Caa/Taa																																																																														
AURKB	0	MSKCC	GRCh37	17	8108236	8108236	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	584	1167	1	ENST00000585124.1:c.988A>T	p.Asn330Tyr	p.N330Y	ENST00000585124	NM_004217.3	330	Aac/Tac																																																																														
CD79A	0	MSKCC	GRCh37	19	42383634	42383634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	216	868	0	ENST00000221972.3:c.409G>T	p.Gly137Trp	p.G137W	ENST00000221972	NM_021601.3	137	Ggg/Tgg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46252698	46252698	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	191	806	0	ENST00000371998.3:c.127A>G	p.Lys43Glu	p.K43E	ENST00000371998		43	Aaa/Gaa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164860	36164872	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCGGGGAACTG	GCGCGGGGAACTG	-			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	893	1226	0	ENST00000300305.3:c.1003_1015del	p.Gln335CysfsTer255	p.Q335Cfs*255	ENST00000300305		335	CAGTTCCCCGCGCtg/tg																																																																														
IL7R	0	MSKCC	GRCh37	5	35875643	35875643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	318	949	3	ENST00000303115.3:c.830C>A	p.Pro277His	p.P277H	ENST00000303115	NM_002185.3	277	cCc/cAc																																																																														
CCND3	0	MSKCC	GRCh37	6	41909223	41909223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	566	1153	0	ENST00000372991.4:c.165C>A	p.His55Gln	p.H55Q	ENST00000372991	NM_001760.3	55	caC/caA																																																																														
CCND3	0	MSKCC	GRCh37	6	41909242	41909242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	540	1114	0	ENST00000372991.4:c.146A>G	p.Gln49Arg	p.Q49R	ENST00000372991	NM_001760.3	49	cAg/cGg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099969	157099969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	79	515	2	ENST00000346085.5:c.906C>A	p.Ser302Arg	p.S302R	ENST00000346085	NM_020732.3	302	agC/agA																																																																														
CARD11	0	MSKCC	GRCh37	7	2983932	2983932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	567	1336	2	ENST00000396946.4:c.598G>T	p.Asp200Tyr	p.D200Y	ENST00000396946	NM_032415.4	200	Gac/Tac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412727	139412727	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	150	1022	0	ENST00000277541.6:c.1117A>C	p.Asn373His	p.N373H	ENST00000277541	NM_017617.3	373	Aac/Cac																																																																														
AMER1	0	MSKCC	GRCh37	X	63410442	63410442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	149	560	0	ENST00000330258.3:c.2725del	p.Ser909ProfsTer67	p.S909Pfs*67	ENST00000330258	NM_152424.3	909	Tcc/cc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	85	661	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	139	867	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	88	684	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	116	1017	1	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023471	27023471	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	326	747	0	ENST00000324856.7:c.577G>T	p.Glu193Ter	p.E193*	ENST00000324856	NM_006015.4	193	Gag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108198371	108198371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	130	619	0	ENST00000278616.4:c.6976-1G>A		p.X2326_splice	ENST00000278616	NM_000051.3	2326																																																																															
ARID2	0	MSKCC	GRCh37	12	46243882	46243882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	153	638	0	ENST00000334344.6:c.1976C>G	p.Ser659Cys	p.S659C	ENST00000334344	NM_152641.2	659	tCt/tGt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49441822	49441822	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	57	910	0	ENST00000301067.7:c.4162del	p.Arg1388GlyfsTer29	p.R1388Gfs*29	ENST00000301067	NM_003482.3	1388	Cgg/gg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444360	49444360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	204	986	0	ENST00000301067.7:c.3011C>G	p.Ser1004Cys	p.S1004C	ENST00000301067	NM_003482.3	1004	tCt/tGt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444482	49444482	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	231	991	1	ENST00000301067.7:c.2889del	p.Asp966ThrfsTer34	p.D966Tfs*34	ENST00000301067	NM_003482.3	963	gcC/gc																																																																														
FANCA	0	MSKCC	GRCh37	16	89845403	89845403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	209	848	0	ENST00000389301.3:c.1724G>A	p.Arg575Lys	p.R575K	ENST00000389301	NM_000135.2	575	aGg/aAg																																																																														
TP53	0	MSKCC	GRCh37	17	7579906	7579906	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	111	852	1	ENST00000269305.4:c.7G>T	p.Glu3Ter	p.E3*	ENST00000269305	NM_001126112.2	3	Gag/Tag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15950320	15950320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	101	992	0	ENST00000268712.3:c.6624G>C	p.Lys2208Asn	p.K2208N	ENST00000268712	NM_006311.3	2208	aaG/aaC																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395803	45395803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	127	488	0	ENST00000262160.6:c.331C>G	p.Leu111Val	p.L111V	ENST00000262160	NM_005901.5	111	Ctt/Gtt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213502	36213502	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	154	1288	0	ENST00000222270.7:c.2604C>G	p.Ile868Met	p.I868M	ENST00000222270	NM_014727.1	868	atC/atG																																																																														
SOS1	0	MSKCC	GRCh37	2	39234174	39234174	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	54	894	0	ENST00000402219.2:c.2671G>A	p.Glu891Lys	p.E891K	ENST00000402219	NM_005633.3	891	Gag/Aag																																																																														
WWTR1	0	MSKCC	GRCh37	3	149374864	149374864	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	118	534	0	ENST00000360632.3:c.230G>C	p.Arg77Pro	p.R77P	ENST00000360632	NM_015472.4	77	cGa/cCa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808924	1808924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	137	932	1	ENST00000260795.2:c.2356G>A	p.Asp786Asn	p.D786N	ENST00000260795		786	Gac/Aac																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526322	31526322	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020121-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	56	1197	1	ENST00000344624.3:c.718C>T	p.Arg240Ter	p.R240*	ENST00000344624		240	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	312	635	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	35	741	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5231551	5231551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	171	729	1	ENST00000357368.4:c.1925C>T	p.Pro642Leu	p.P642L	ENST00000357368	NM_002850.3	642	cCg/cTg																																																																														
CCNE1	898	MSKCC	GRCh37	19	30313222	30313222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	225	934	1	ENST00000262643.3:c.916C>T	p.His306Tyr	p.H306Y	ENST00000262643	NM_001238.2	306	Cat/Tat																																																																														
TP53	0	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	550	1022	2	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg																																																																														
RHOA	0	MSKCC	GRCh37	3	49412967	49412967	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1663	241	1146	0	ENST00000418115.1:c.56C>G	p.Thr19Arg	p.T19R	ENST00000418115	NM_001664.2	19	aCa/aGa																																																																														
TET1	0	MSKCC	GRCh37	10	70332348	70332348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	189	827	0	ENST00000373644.4:c.253G>A	p.Asp85Asn	p.D85N	ENST00000373644	NM_030625.2	85	Gat/Aat																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367296	50367296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	156	783	0	ENST00000331340.3:c.103G>A	p.Glu35Lys	p.E35K	ENST00000331340	NM_006060.4	35	Gag/Aag																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185181426	185181426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	244	920	1	ENST00000265026.3:c.1367G>A	p.Arg456Gln	p.R456Q	ENST00000265026	NM_004721.4	456	cGa/cAa																																																																														
SRSF2	0	MSKCC	GRCh37	17	74733044	74733044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	173	821	1	ENST00000359995.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000359995	NM_001195427.1	67	Gac/Aac																																																																														
MTOR	0	MSKCC	GRCh37	1	11273581	11273581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	162	801	2	ENST00000361445.4:c.3160C>A	p.Leu1054Ile	p.L1054I	ENST00000361445	NM_004958.3	1054	Ctt/Att																																																																														
SPEN	0	MSKCC	GRCh37	1	16259580	16259580	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	193	913	0	ENST00000375759.3:c.6845C>G	p.Ser2282Cys	p.S2282C	ENST00000375759	NM_015001.2	2282	tCt/tGt																																																																														
TET1	0	MSKCC	GRCh37	10	70405106	70405106	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	239	1099	1	ENST00000373644.4:c.2620C>T	p.Gln874Ter	p.Q874*	ENST00000373644	NM_030625.2	874	Caa/Taa																																																																														
ATM	0	MSKCC	GRCh37	11	108173652	108173652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	94	924	0	ENST00000278616.4:c.5392C>G	p.Leu1798Val	p.L1798V	ENST00000278616	NM_000051.3	1798	Cta/Gta																																																																														
ETV6	0	MSKCC	GRCh37	12	11803068	11803068	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	60	667	0	ENST00000396373.4:c.7G>C	p.Glu3Gln	p.E3Q	ENST00000396373	NM_001987.4	3	Gag/Cag																																																																														
NTRK3	0	MSKCC	GRCh37	15	88726698	88726698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	208	810	2	ENST00000360948.2:c.346C>T	p.Arg116Trp	p.R116W	ENST00000360948	NM_001012338.2	116	Cgg/Tgg																																																																														
SOS1	0	MSKCC	GRCh37	2	39250104	39250104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	205	1027	0	ENST00000402219.2:c.1465C>T	p.Arg489Cys	p.R489C	ENST00000402219	NM_005633.3	489	Cgt/Tgt																																																																														
CHEK2	0	MSKCC	GRCh37	22	29115441	29115441	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	183	803	0	ENST00000328354.6:c.625C>T	p.Gln209Ter	p.Q209*	ENST00000328354	NM_007194.3	209	Cag/Tag																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67588158	67588158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	157	835	0	ENST00000274335.5:c.988G>C	p.Asp330His	p.D330H	ENST00000274335		330	Gat/Cat																																																																														
APC	0	MSKCC	GRCh37	5	112103077	112103077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	124	519	0	ENST00000257430.4:c.412G>A	p.Glu138Lys	p.E138K	ENST00000257430	NM_000038.5	138	Gag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112157607	112157607	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	181	852	0	ENST00000257430.4:c.1327G>C	p.Glu443Gln	p.E443Q	ENST00000257430	NM_000038.5	443	Gaa/Caa																																																																														
DAXX	0	MSKCC	GRCh37	6	33287839	33287839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	279	1132	0	ENST00000374542.5:c.1414G>A	p.Glu472Lys	p.E472K	ENST00000374542	NM_001141970.1	472	Gag/Aag																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553715	106553715	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	238	848	1	ENST00000369096.4:c.1680G>T	p.Lys560Asn	p.K560N	ENST00000369096	NM_001198.3	560	aaG/aaT																																																																														
PRDM1	0	MSKCC	GRCh37	6	106554851	106554851	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	197	773	0	ENST00000369096.4:c.1968G>C	p.Glu656Asp	p.E656D	ENST00000369096	NM_001198.3	656	gaG/gaC																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367269	50367269	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	143	708	1	ENST00000331340.3:c.76G>T	p.Glu26Ter	p.E26*	ENST00000331340	NM_006060.4	26	Gag/Tag																																																																														
TRAF2	0	MSKCC	GRCh37	9	139802521	139802521	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	197	866	4	ENST00000247668.2:c.367-1G>T		p.X123_splice	ENST00000247668	NM_021138.3	123																																																																															
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	501	967	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
RB1	0	MSKCC	GRCh37	13	49033916	49033916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	364	832	0	ENST00000267163.4:c.2053C>T	p.Gln685Ter	p.Q685*	ENST00000267163	NM_000321.2	685	Cag/Tag																																																																														
IGF1R	0	MSKCC	GRCh37	15	99460060	99460060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	248	687	2	ENST00000268035.6:c.2156G>A	p.Arg719His	p.R719H	ENST00000268035	NM_000875.3	719	cGc/cAc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	402	971	0	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																														
APC	0	MSKCC	GRCh37	5	112137018	112137018	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	397	817	0	ENST00000257430.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000257430	NM_000038.5	258	Gag/Tag																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434959	49434959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	402	758	0	ENST00000301067.7:c.6594del	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2198	ccC/cc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149457704	149457704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	544	843	0	ENST00000286301.3:c.700G>T	p.Asp234Tyr	p.D234Y	ENST00000286301	NM_005211.3	234	Gat/Tat																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652159	36652160	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0020123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	396	788	1	ENST00000244741.5:c.281_282delinsTT	p.Arg94Leu	p.R94L	ENST00000244741	NM_000389.4	94	cGG/cTT																																																																														
BRAF	0	MSKCC	GRCh37	7	140534459	140534459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	347	612	0	ENST00000288602.6:c.454C>T	p.Pro152Ser	p.P152S	ENST00000288602	NM_004333.4	152	Cca/Tca																																																																														
PREX2	0	MSKCC	GRCh37	8	69002813	69002813	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020123-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	62	364	0	ENST00000288368.4:c.2114-1G>A		p.X705_splice	ENST00000288368	NM_024870.2	705																																																																															
IRS2	0	MSKCC	GRCh37	13	110437121	110437121	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	28	133	0	ENST00000375856.3:c.1280A>G	p.His427Arg	p.H427R	ENST00000375856	NM_003749.2	427	cAc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578464	7578464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	673	1033	0	ENST00000269305.4:c.466C>G	p.Arg156Gly	p.R156G	ENST00000269305	NM_001126112.2	156	Cgc/Ggc																																																																														
DICER1	0	MSKCC	GRCh37	14	95562273	95562273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	111	668	0	ENST00000343455.3:c.4984C>G	p.Leu1662Val	p.L1662V	ENST00000343455	NM_177438.2	1662	Ctt/Gtt																																																																														
FANCC	0	MSKCC	GRCh37	9	97912204	97912204	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	209	766	0	ENST00000289081.3:c.686+1G>T		p.X229_splice	ENST00000289081	NM_000136.2	229																																																																															
GATA1	0	MSKCC	GRCh37	X	48650371	48650371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	266	977	0	ENST00000376670.3:c.341A>G	p.Glu114Gly	p.E114G	ENST00000376670	NM_002049.3	114	gAg/gGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	367	562	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	500	820	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	569	905	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
BRAF	0	MSKCC	GRCh37	7	140453179	140453179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	382	666	0	ENST00000288602.6:c.1756G>A	p.Glu586Lys	p.E586K	ENST00000288602	NM_004333.4	586	Gaa/Aaa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120480549	120480549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	111	780	0	ENST00000256646.2:c.3268C>T	p.Pro1090Ser	p.P1090S	ENST00000256646	NM_024408.3	1090	Cca/Tca																																																																														
FANCA	0	MSKCC	GRCh37	16	89858388	89858388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	421	954	2	ENST00000389301.3:c.1172C>T	p.Ser391Phe	p.S391F	ENST00000389301	NM_000135.2	391	tCc/tTc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843574	156843574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	128	963	0	ENST00000524377.1:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000524377	NM_002529.3	334	Gag/Aag																																																																														
RFWD2	0	MSKCC	GRCh37	1	176145049	176145049	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	83	759	0	ENST00000367669.3:c.562T>A	p.Leu188Met	p.L188M	ENST00000367669	NM_022457.5	188	Ttg/Atg																																																																														
IGF1	0	MSKCC	GRCh37	12	102813380	102813380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	429	770	0	ENST00000307046.8:c.309G>T	p.Arg103Ser	p.R103S	ENST00000307046	NM_001111285.1	103	agG/agT																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49280956	49280956	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	140	714	0	ENST00000282018.3:c.3G>A	p.Met1?	p.M1?	ENST00000282018	NM_020377.2	1	atG/atA																																																																														
AXIN1	0	MSKCC	GRCh37	16	348214	348214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	425	945	1	ENST00000262320.3:c.1292C>T	p.Pro431Leu	p.P431L	ENST00000262320	NM_003502.3	431	cCc/cTc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781392	3781392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	350	852	1	ENST00000262367.5:c.4973G>T	p.Cys1658Phe	p.C1658F	ENST00000262367	NM_004380.2	1658	tGt/tTt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934567	9934567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	288	857	1	ENST00000330684.3:c.1588G>A	p.Glu530Lys	p.E530K	ENST00000330684	NM_001134407.1	530	Gaa/Aaa																																																																														
CARM1	0	MSKCC	GRCh37	19	11031545	11031545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	612	1027	1	ENST00000327064.4:c.1460C>T	p.Ser487Phe	p.S487F	ENST00000327064	NM_199141.1	487	tCc/tTc																																																																														
RAF1	0	MSKCC	GRCh37	3	12650313	12650313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	506	844	2	ENST00000251849.4:c.533C>T	p.Thr178Ile	p.T178I	ENST00000251849	NM_002880.3	178	aCc/aTc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169191	32169191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	605	900	0	ENST00000375023.3:c.3842G>A	p.Gly1281Glu	p.G1281E	ENST00000375023	NM_004557.3	1281	gGa/gAa																																																																														
ROS1	0	MSKCC	GRCh37	6	117678985	117678985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	194	762	0	ENST00000368508.3:c.3836C>T	p.Ser1279Phe	p.S1279F	ENST00000368508	NM_002944.2	1279	tCt/tTt																																																																														
CARD11	0	MSKCC	GRCh37	7	2959090	2959090	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	370	894	0	ENST00000396946.4:c.2426A>C	p.Gln809Pro	p.Q809P	ENST00000396946	NM_032415.4	809	cAg/cCg																																																																														
SOX17	0	MSKCC	GRCh37	8	55372292	55372292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	109	764	1	ENST00000297316.4:c.982C>T	p.Pro328Ser	p.P328S	ENST00000297316	NM_022454.3	328	Ccg/Tcg																																																																														
CRLF2	0	MSKCC	GRCh37	X	1321405	1321405	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	294	527	0	ENST00000381566.1:c.350T>G	p.Leu117Arg	p.L117R	ENST00000381566		117	cTg/cGg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36215897	36215898	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	A			P-0020127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	381	952	0	ENST00000222270.7:c.3437_3438delinsA	p.Leu1146Ter	p.L1146*	ENST00000222270	NM_014727.1	1146	tTG/tA																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060863	38060863	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	156	885	0	ENST00000250448.2:c.1126del	p.Ala376HisfsTer13	p.A376Hfs*13	ENST00000250448	NM_004496.3	376	Gca/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7579530	7579530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	179	1167	0	ENST00000269305.4:c.157del	p.Trp53GlyfsTer70	p.W53Gfs*70	ENST00000269305	NM_001126112.2	53	Tgg/gg																																																																														
DICER1	0	MSKCC	GRCh37	14	95557630	95557630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	352	981	0	ENST00000343455.3:c.5437G>C	p.Glu1813Gln	p.E1813Q	ENST00000343455	NM_177438.2	1813	Gag/Cag																																																																														
B2M	0	MSKCC	GRCh37	15	45003799	45003799	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	330	783	0	ENST00000558401.1:c.55G>T	p.Glu19Ter	p.E19*	ENST00000558401	NM_004048.2	19	Gag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47165678	47165678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	301	888	1	ENST00000409792.3:c.448C>T	p.His150Tyr	p.H150Y	ENST00000409792	NM_014159.6	150	Cat/Tat																																																																														
RBM10	0	MSKCC	GRCh37	X	47039625	47039626	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTGCAGATC			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	175	865	0	ENST00000329236.7:c.850_858dup	p.Ile284_Gln286dup	p.I284_Q286dup	ENST00000329236	NM_001204466.1	284	-/CTGCAGATC																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528553	89528553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	195	520	0	ENST00000336596.2:c.2853G>A	p.Met951Ile	p.M951I	ENST00000336596	NM_005233.5	951	atG/atA																																																																														
RPTOR	0	MSKCC	GRCh37	17	78897336	78897336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	285	1003	0	ENST00000306801.3:c.2671G>T	p.Asp891Tyr	p.D891Y	ENST00000306801	NM_020761.2	891	Gat/Tat																																																																														
MGA	0	MSKCC	GRCh37	15	42028539	42028539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	413	1001	0	ENST00000219905.7:c.4077C>G	p.Ile1359Met	p.I1359M	ENST00000219905	NM_001164273.1	1359	atC/atG																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288502	15288502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	141	316	0	ENST00000263388.2:c.4237G>A	p.Asp1413Asn	p.D1413N	ENST00000263388	NM_000435.2	1413	Gac/Aac																																																																														
RAF1	0	MSKCC	GRCh37	3	12645687	12645687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	206	548	0	ENST00000251849.4:c.782C>T	p.Pro261Leu	p.P261L	ENST00000251849	NM_002880.3	261	cCt/cTt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600470	10600470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	323	946	2	ENST00000171111.5:c.1385G>T	p.Gly462Val	p.G462V	ENST00000171111	NM_203500.1	462	gGg/gTg																																																																														
DICER1	0	MSKCC	GRCh37	14	95562606	95562606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	218	652	0	ENST00000343455.3:c.4651G>C	p.Glu1551Gln	p.E1551Q	ENST00000343455	NM_177438.2	1551	Gag/Cag																																																																														
MGA	0	MSKCC	GRCh37	15	42028481	42028481	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	292	797	0	ENST00000219905.7:c.4019C>G	p.Ser1340Ter	p.S1340*	ENST00000219905	NM_001164273.1	1340	tCa/tGa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911971	32911971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	293	898	0	ENST00000380152.3:c.3479G>C	p.Arg1160Thr	p.R1160T	ENST00000380152		1160	aGa/aCa																																																																														
SPEN	0	MSKCC	GRCh37	1	16256441	16256441	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	321	976	0	ENST00000375759.3:c.3706G>C	p.Asp1236His	p.D1236H	ENST00000375759	NM_015001.2	1236	Gat/Cat																																																																														
SPEN	0	MSKCC	GRCh37	1	16256988	16256988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	392	1017	1	ENST00000375759.3:c.4253G>A	p.Arg1418Gln	p.R1418Q	ENST00000375759	NM_015001.2	1418	cGa/cAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023006	27023006	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	29	88	0	ENST00000324856.7:c.112G>C	p.Glu38Gln	p.E38Q	ENST00000324856	NM_006015.4	38	Gag/Cag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023610	27023610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	274	618	0	ENST00000324856.7:c.716C>T	p.Pro239Leu	p.P239L	ENST00000324856	NM_006015.4	239	cCg/cTg																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439599	51439599	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	209	740	0	ENST00000262662.1:c.164G>C	p.Arg55Thr	p.R55T	ENST00000262662		55	aGa/aCa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120457999	120457999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	313	873	0	ENST00000256646.2:c.7346G>A	p.Gly2449Glu	p.G2449E	ENST00000256646	NM_024408.3	2449	gGa/gAa																																																																														
TET1	0	MSKCC	GRCh37	10	70450591	70450591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	363	919	0	ENST00000373644.4:c.5431G>A	p.Glu1811Lys	p.E1811K	ENST00000373644	NM_030625.2	1811	Gaa/Aaa																																																																														
ATM	0	MSKCC	GRCh37	11	108160368	108160368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	225	686	0	ENST00000278616.4:c.4276G>A	p.Ala1426Thr	p.A1426T	ENST00000278616	NM_000051.3	1426	Gca/Aca																																																																														
KMT2A	0	MSKCC	GRCh37	11	118307593	118307593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	291	866	0	ENST00000534358.1:c.366C>G	p.Ile122Met	p.I122M	ENST00000534358	NM_005933.3	122	atC/atG																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426469	49426469	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	416	1158	0	ENST00000301067.7:c.12019C>T	p.Gln4007Ter	p.Q4007*	ENST00000301067	NM_003482.3	4007	Caa/Taa																																																																														
PTPN11	0	MSKCC	GRCh37	12	112924315	112924315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	350	1020	0	ENST00000351677.2:c.1261C>T	p.Arg421Trp	p.R421W	ENST00000351677	NM_002834.3	421	Cgg/Tgg																																																																														
RAB35	0	MSKCC	GRCh37	12	120535159	120535159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	243	826	0	ENST00000229340.5:c.496G>A	p.Glu166Lys	p.E166K	ENST00000229340	NM_006861.6	166	Gag/Aag																																																																														
FLT3	0	MSKCC	GRCh37	13	28608067	28608067	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	343	1080	0	ENST00000241453.7:c.1899C>G	p.Ser633Arg	p.S633R	ENST00000241453	NM_004119.2	633	agC/agG																																																																														
FLT1	0	MSKCC	GRCh37	13	28931812	28931812	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	246	706	2	ENST00000282397.4:c.2127A>T	p.Leu709Phe	p.L709F	ENST00000282397	NM_002019.4	709	ttA/ttT																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911387	32911387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	244	891	0	ENST00000380152.3:c.2895G>A	p.Met965Ile	p.M965I	ENST00000380152		965	atG/atA																																																																														
RB1	0	MSKCC	GRCh37	13	49039134	49039134	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	174	460	0	ENST00000267163.4:c.2212A>G	p.Thr738Ala	p.T738A	ENST00000267163	NM_000321.2	738	Aca/Gca																																																																														
IRS2	0	MSKCC	GRCh37	13	110436695	110436695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	369	1033	2	ENST00000375856.3:c.1706G>A	p.Arg569Gln	p.R569Q	ENST00000375856	NM_003749.2	569	cGa/cAa																																																																														
TSHR	0	MSKCC	GRCh37	14	81609582	81609582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	286	815	0	ENST00000298171.2:c.1180G>A	p.Glu394Lys	p.E394K	ENST00000298171	NM_000369.2	394	Gaa/Aaa																																																																														
TSHR	0	MSKCC	GRCh37	14	81610140	81610140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	261	661	0	ENST00000298171.2:c.1738C>G	p.Leu580Val	p.L580V	ENST00000298171	NM_000369.2	580	Ctg/Gtg																																																																														
DICER1	0	MSKCC	GRCh37	14	95563014	95563014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	206	692	0	ENST00000343455.3:c.4243G>A	p.Glu1415Lys	p.E1415K	ENST00000343455	NM_177438.2	1415	Gag/Aag																																																																														
DICER1	0	MSKCC	GRCh37	14	95572056	95572056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	394	1108	0	ENST00000343455.3:c.3052G>A	p.Glu1018Lys	p.E1018K	ENST00000343455	NM_177438.2	1018	Gag/Aag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350663	89350663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	458	1511	0	ENST00000301030.4:c.2287G>C	p.Glu763Gln	p.E763Q	ENST00000301030	NM_001256183.1	763	Gag/Cag																																																																														
NF1	0	MSKCC	GRCh37	17	29684037	29684037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	288	1073	3	ENST00000358273.4:c.7798G>A	p.Glu2600Lys	p.E2600K	ENST00000358273	NM_001042492.2	2600	Gaa/Aaa																																																																														
RAD51D	0	MSKCC	GRCh37	17	33428030	33428030	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	350	1023	0	ENST00000335858.7:c.593A>T	p.Asp198Val	p.D198V	ENST00000335858	NM_133629.2	198	gAc/gTc																																																																														
CDK12	0	MSKCC	GRCh37	17	37618746	37618746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	295	836	0	ENST00000447079.4:c.422G>A	p.Gly141Glu	p.G141E	ENST00000447079	NM_015083.1	141	gGa/gAa																																																																														
SMAD2	0	MSKCC	GRCh37	18	45372095	45372095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	362	1105	0	ENST00000262160.6:c.1074G>C	p.Gln358His	p.Q358H	ENST00000262160	NM_005901.5	358	caG/caC																																																																														
SMAD2	0	MSKCC	GRCh37	18	45377654	45377654	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	200	669	0	ENST00000262160.6:c.775C>G	p.His259Asp	p.H259D	ENST00000262160	NM_005901.5	259	Cat/Gat																																																																														
MALT1	0	MSKCC	GRCh37	18	56390357	56390357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	204	832	0	ENST00000348428.3:c.1096G>A	p.Val366Met	p.V366M	ENST00000348428	NM_006785.3	366	Gtg/Atg																																																																														
STK11	0	MSKCC	GRCh37	19	1218492	1218492	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	348	868	1	ENST00000326873.7:c.367del	p.Gln123ArgfsTer6	p.Q123Rfs*6	ENST00000326873	NM_000455.4	123	Cag/ag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2180744	2180749	+	inframe_deletion	In_Frame_Del	DEL	CGAGAC	CGAGAC	-			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	350	1078	0	ENST00000398665.3:c.115_120del	p.Glu39_Thr40del	p.E39_T40del	ENST00000398665	NM_032482.2	38	atCGAGACc/atc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11107030	11107030	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	207	673	1	ENST00000344626.4:c.1735G>T	p.Glu579Ter	p.E579*	ENST00000344626	NM_003072.3	579	Gag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170438	11170438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	314	976	0	ENST00000344626.4:c.4645G>C	p.Asp1549His	p.D1549H	ENST00000344626	NM_003072.3	1549	Gac/Cac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170531	11170531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	310	993	0	ENST00000344626.4:c.4738G>C	p.Glu1580Gln	p.E1580Q	ENST00000344626	NM_003072.3	1580	Gag/Cag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288582	15288582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	23	32	0	ENST00000263388.2:c.4157G>A	p.Arg1386Gln	p.R1386Q	ENST00000263388	NM_000435.2	1386	cGg/cAg																																																																														
CIC	0	MSKCC	GRCh37	19	42791217	42791217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	368	1048	0	ENST00000575354.2:c.277G>A	p.Asp93Asn	p.D93N	ENST00000575354	NM_015125.3	93	Gac/Aac																																																																														
CIC	0	MSKCC	GRCh37	19	42793231	42793231	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	342	952	0	ENST00000575354.2:c.1123G>T	p.Glu375Ter	p.E375*	ENST00000575354	NM_015125.3	375	Gaa/Taa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096291	178096291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	323	864	1	ENST00000397062.3:c.1040C>T	p.Ser347Leu	p.S347L	ENST00000397062	NM_006164.4	347	tCa/tTa																																																																														
PMS1	0	MSKCC	GRCh37	2	190708774	190708774	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	327	1040	0	ENST00000441310.2:c.667G>C	p.Glu223Gln	p.E223Q	ENST00000441310	NM_000534.4	223	Gaa/Caa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266792	198266792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	366	891	0	ENST00000335508.6:c.2140G>A	p.Glu714Lys	p.E714K	ENST00000335508	NM_012433.2	714	Gaa/Aaa																																																																														
MLH1	0	MSKCC	GRCh37	3	37056016	37056016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	262	845	0	ENST00000231790.2:c.771C>G	p.Ile257Met	p.I257M	ENST00000231790	NM_000249.3	257	atC/atG																																																																														
SETD2	0	MSKCC	GRCh37	3	47162312	47162312	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs115542291		P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	244	695	0	ENST00000409792.3:c.3814C>T	p.Gln1272Ter	p.Q1272*	ENST00000409792	NM_014159.6	1272	Cag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47165587	47165587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	272	919	1	ENST00000409792.3:c.539C>T	p.Ser180Leu	p.S180L	ENST00000409792	NM_014159.6	180	tCa/tTa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52620479	52620479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	420	963	3	ENST00000394830.3:c.3274G>A	p.Glu1092Lys	p.E1092K	ENST00000394830	NM_018313.4	1092	Gag/Aag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52668829	52668829	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	203	601	1	ENST00000394830.3:c.1090G>A	p.Ala364Thr	p.A364T	ENST00000394830	NM_018313.4	364	Gca/Aca																																																																														
ATR	0	MSKCC	GRCh37	3	142217479	142217479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	319	937	0	ENST00000350721.4:c.5518G>C	p.Glu1840Gln	p.E1840Q	ENST00000350721	NM_001184.3	1840	Gaa/Caa																																																																														
INPP4B	0	MSKCC	GRCh37	4	143081560	143081560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	305	968	0	ENST00000262992.4:c.1514G>C	p.Arg505Thr	p.R505T	ENST00000262992	NM_001101669.1	505	aGa/aCa																																																																														
FAT1	0	MSKCC	GRCh37	4	187584674	187584674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	341	1083	1	ENST00000441802.2:c.3359C>T	p.Ser1120Leu	p.S1120L	ENST00000441802	NM_005245.3	1120	tCa/tTa																																																																														
INHBA	0	MSKCC	GRCh37	7	41730104	41730104	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	239	728	0	ENST00000242208.4:c.425A>T	p.Lys142Met	p.K142M	ENST00000242208	NM_002192.2	142	aAg/aTg																																																																														
SMO	0	MSKCC	GRCh37	7	128851972	128851972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	325	1052	1	ENST00000249373.3:c.2044G>T	p.Val682Leu	p.V682L	ENST00000249373	NM_005631.4	682	Gtg/Ttg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151892994	151892994	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	206	647	0	ENST00000262189.6:c.4376C>G	p.Ser1459Ter	p.S1459*	ENST00000262189	NM_170606.2	1459	tCa/tGa																																																																														
DUSP4	0	MSKCC	GRCh37	8	29207636	29207636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	245	842	0	ENST00000240100.2:c.160C>G	p.Leu54Val	p.L54V	ENST00000240100	NM_001394.6	54	Ctg/Gtg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741860	145741860	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	363	1078	0	ENST00000428558.2:c.643G>C	p.Glu215Gln	p.E215Q	ENST00000428558	NM_004260.3	215	Gag/Cag																																																																														
TRAF2	0	MSKCC	GRCh37	9	139815559	139815559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	413	1145	0	ENST00000247668.2:c.1030G>C	p.Glu344Gln	p.E344Q	ENST00000247668	NM_021138.3	344	Gag/Cag																																																																														
STAG2	0	MSKCC	GRCh37	X	123184073	123184073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	271	919	0	ENST00000218089.9:c.931G>A	p.Glu311Lys	p.E311K	ENST00000218089	NM_001042749.1	311	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	13	847	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	34	773	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578428	+	frameshift_variant	Frame_Shift_Del	DEL	CAACCTCCGTCATGTG	CAACCTCCGTCATGTG	-			P-0020134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	131	852	25	ENST00000269305.4:c.502_517del	p.His168Ter	p.H168*	ENST00000269305	NM_001126112.2	168	CACATGACGGAGGTTGtg/tg																																																																														
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0020135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	72	655	2	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0020135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	136	843	2	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32188188	32188188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	307	759	0	ENST00000375023.3:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000375023	NM_004557.3	385	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0020139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	550	1082	1	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
DROSHA	0	MSKCC	GRCh37	5	31526347	31526347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1452	545	1358	0	ENST00000344624.3:c.693C>G	p.His231Gln	p.H231Q	ENST00000344624		231	caC/caG																																																																														
TP53	0	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	364	1046	1	ENST00000269305.4:c.568C>T	p.Pro190Ser	p.P190S	ENST00000269305	NM_001126112.2	190	Cct/Tct																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	86	875	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	64	778	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	83	751	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	29	453	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TBX3	0	MSKCC	GRCh37	12	115109924	115109924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	36	890	2	ENST00000257566.3:c.1954G>A	p.Gly652Ser	p.G652S	ENST00000257566	NM_016569.3	652	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	59	891	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	56	844	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	71	837	2	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149497245	149497245	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	94	1044	3	ENST00000261799.4:c.3073delC	p.Leu1025CysfsTer20	p.L1025Cfs*20	ENST00000261799	NM_002609.3	1025	Ctg/tg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	41	574	1	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	33	872	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
SMO	0	MSKCC	GRCh37	7	128843374	128843374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	110	937	4	ENST00000249373.3:c.481C>T	p.Arg161Trp	p.R161W	ENST00000249373	NM_005631.4	161	Cgg/Tgg																																																																														
CD79B	0	MSKCC	GRCh37	17	62007731	62007731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	25	510	0	ENST00000392795.3:c.136C>T	p.Arg46Trp	p.R46W	ENST00000392795	NM_001039933.1	46	Cgg/Tgg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	78	705	0	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																														
LATS1	0	MSKCC	GRCh37	6	150001374	150001374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	56	1107	2	ENST00000253339.5:c.2230C>T	p.Arg744Ter	p.R744*	ENST00000253339		744	Cga/Tga																																																																														
PTPRS	0	MSKCC	GRCh37	19	5243960	5243960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	57	771	1	ENST00000357368.4:c.1522G>A	p.Gly508Ser	p.G508S	ENST00000357368	NM_002850.3	508	Ggc/Agc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	30	855	8	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	77	518	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713345	30713345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	34	732	0	ENST00000359013.4:c.745C>T	p.Arg249Cys	p.R249C	ENST00000359013	NM_001024847.2	249	Cgc/Tgc																																																																														
GNAS	0	MSKCC	GRCh37	20	57485403	57485403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	46	627	0	ENST00000371085.3:c.985G>A	p.Gly329Arg	p.G329R	ENST00000371085	NM_000516.4	329	Gga/Aga																																																																														
ERBB4	0	MSKCC	GRCh37	2	212288969	212288969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148791072		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	58	1012	2	ENST00000342788.4:c.2777C>T	p.Thr926Met	p.T926M	ENST00000342788	NM_005235.2	926	aCg/aTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119909	70119910	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	77	765	2	ENST00000245479.2:c.916dup	p.Val306GlyfsTer272	p.V306Gfs*272	ENST00000245479	NM_000346.3	304	ccg/ccGg																																																																														
TCF3	0	MSKCC	GRCh37	19	1612344	1612344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	104	1071	2	ENST00000344749.5:c.1675G>A	p.Val559Met	p.V559M	ENST00000344749	NM_001136139.2	559	Gtg/Atg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780289	9780289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201282174		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	45	685	5	ENST00000377346.4:c.1459G>A	p.Ala487Thr	p.A487T	ENST00000377346	NM_005026.3	487	Gcc/Acc																																																																														
TERT	0	MSKCC	GRCh37	5	1279530	1279530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	101	1134	1	ENST00000310581.5:c.2006G>A	p.Arg669Gln	p.R669Q	ENST00000310581	NM_198253.2	669	cGg/cAg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	105	1075	2	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224124	36224124	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	43	903	0	ENST00000222270.7:c.6678delC	p.Thr2227ArgfsTer34	p.T2227Rfs*34	ENST00000222270	NM_014727.1	2225	tCc/tc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862845	9862845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	91	968	1	ENST00000330684.3:c.2458G>A	p.Val820Ile	p.V820I	ENST00000330684	NM_001134407.1	820	Gta/Ata																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097688	27097688	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	98	1022	0	ENST00000324856.7:c.3281del	p.Lys1094SerfsTer67	p.K1094Sfs*67	ENST00000324856	NM_006015.4	1093	Aaa/aa																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798454	45798454	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	122	1004	0	ENST00000372115.3:c.515T>A	p.Leu172Gln	p.L172Q	ENST00000372115	NM_001048171.1	172	cTg/cAg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123298104	123298104	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	50	806	0	ENST00000358487.5:c.748+2T>G		p.X250_splice	ENST00000358487	NM_000141.4	250																																																																															
RPS6KB2	0	MSKCC	GRCh37	11	67198960	67198960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	56	780	0	ENST00000312629.5:c.431T>C	p.Leu144Pro	p.L144P	ENST00000312629	NM_003952.2	144	cTc/cCc																																																																														
PGR	0	MSKCC	GRCh37	11	100999337	100999337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	96	1094	1	ENST00000325455.5:c.465del	p.Ala156ProfsTer10	p.A156Pfs*10	ENST00000325455	NM_001202474.3	155	ccC/cc																																																																														
KDM5A	0	MSKCC	GRCh37	12	394723	394723	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	54	977	0	ENST00000399788.2:c.4972T>G	p.Cys1658Gly	p.C1658G	ENST00000399788	NM_001042603.1	1658	Tgt/Ggt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432497	49432497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	74	783	0	ENST00000301067.7:c.8642G>A	p.Arg2881Gln	p.R2881Q	ENST00000301067	NM_003482.3	2881	cGg/cAg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112404	115112404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	76	750	0	ENST00000257566.3:c.1336A>G	p.Thr446Ala	p.T446A	ENST00000257566	NM_016569.3	446	Act/Gct																																																																														
LATS2	0	MSKCC	GRCh37	13	21563152	21563152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	85	963	1	ENST00000382592.4:c.767C>T	p.Pro256Leu	p.P256L	ENST00000382592	NM_014572.2	256	cCg/cTg																																																																														
DICER1	0	MSKCC	GRCh37	14	95560418	95560418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	98	861	2	ENST00000343455.3:c.5171C>T	p.Pro1724Leu	p.P1724L	ENST00000343455	NM_177438.2	1724	cCg/cTg																																																																														
BLM	0	MSKCC	GRCh37	15	91293027	91293027	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	35	963	0	ENST00000355112.3:c.531del	p.Phe177LeufsTer2	p.F177Lfs*2	ENST00000355112	NM_000057.2	177	Ttt/tt																																																																														
CTCF	0	MSKCC	GRCh37	16	67662322	67662322	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs112271126		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	80	802	0	ENST00000264010.4:c.1568A>G	p.Tyr523Cys	p.Y523C	ENST00000264010	NM_006565.3	523	tAc/tGc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37872075	37872075	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	51	1033	0	ENST00000269571.5:c.1396G>C	p.Ala466Pro	p.A466P	ENST00000269571		466	Gcc/Ccc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245584	41245584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	59	1109	0	ENST00000357654.3:c.1964A>G	p.Tyr655Cys	p.Y655C	ENST00000357654	NM_007294.3	655	tAc/tGc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59761361	59761361	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	92	861	2	ENST00000259008.2:c.3046del	p.Ile1016TyrfsTer43	p.I1016Yfs*43	ENST00000259008	NM_032043.2	1016	Ata/ta																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097039	11097039	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	93	1044	0	ENST00000344626.4:c.530T>C	p.Leu177Pro	p.L177P	ENST00000344626	NM_003072.3	177	cTg/cCg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272054	15272054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	104	854	0	ENST00000263388.2:c.6385G>A	p.Ala2129Thr	p.A2129T	ENST00000263388	NM_000435.2	2129	Gct/Act																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18278019	18278019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	46	847	1	ENST00000222254.8:c.1639C>T	p.Arg547Trp	p.R547W	ENST00000222254	NM_005027.3	547	Cgg/Tgg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25471099	25471099	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	102	1008	0	ENST00000264709.3:c.662T>G	p.Ile221Ser	p.I221S	ENST00000264709	NM_175629.2	221	aTt/aGt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248446	212248446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	26	615	0	ENST00000342788.4:c.3821T>C	p.Ile1274Thr	p.I1274T	ENST00000342788	NM_005235.2	1274	aTc/aCc																																																																														
IRS1	0	MSKCC	GRCh37	2	227660553	227660553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	48	756	1	ENST00000305123.5:c.2902G>A	p.Ala968Thr	p.A968T	ENST00000305123	NM_005544.2	968	Gca/Aca																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023284	31023284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	35	926	0	ENST00000375687.4:c.2769G>T	p.Glu923Asp	p.E923D	ENST00000375687	NM_015338.5	923	gaG/gaT																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31375142	31375142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	91	1030	2	ENST00000328111.2:c.539C>T	p.Thr180Met	p.T180M	ENST00000328111	NM_006892.3	180	aCg/aTg																																																																														
EP300	0	MSKCC	GRCh37	22	41551047	41551047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	86	953	3	ENST00000263253.7:c.3191C>T	p.Ala1064Val	p.A1064V	ENST00000263253	NM_001429.3	1064	gCa/gTa																																																																														
MLH1	0	MSKCC	GRCh37	3	37035155	37035155	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	48	534	0	ENST00000231790.2:c.116+1G>T		p.X39_splice	ENST00000231790	NM_000249.3	39																																																																															
MLH1	0	MSKCC	GRCh37	3	37067140	37067140	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	36	521	1	ENST00000231790.2:c.1051G>T	p.Gly351Ter	p.G351*	ENST00000231790	NM_000249.3	351	Gga/Tga																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911480	134911480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	69	942	0	ENST00000398015.3:c.1945G>A	p.Ala649Thr	p.A649T	ENST00000398015	NM_004441.4	649	Gcc/Acc																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41750489	41750490	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	40	777	2	ENST00000226382.2:c.138_139delinsTT	p.Ile47Leu	p.I47L	ENST00000226382	NM_003924.3	46	ccGAta/ccTTta																																																																														
TET2	0	MSKCC	GRCh37	4	106197299	106197299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	54	586	0	ENST00000380013.4:c.5632C>A	p.Arg1878Ser	p.R1878S	ENST00000380013	NM_001127208.2	1878	Cgt/Agt																																																																														
FAT1	0	MSKCC	GRCh37	4	187540992	187540992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	60	678	0	ENST00000441802.2:c.6748T>C	p.Tyr2250His	p.Y2250H	ENST00000441802	NM_005245.3	2250	Tat/Cat																																																																														
NSD1	0	MSKCC	GRCh37	5	176639097	176639097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	66	920	0	ENST00000439151.2:c.3697C>T	p.Arg1233Trp	p.R1233W	ENST00000439151	NM_022455.4	1233	Cgg/Tgg																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056458	26056458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	23	486	0	ENST00000343677.2:c.199G>C	p.Ala67Pro	p.A67P	ENST00000343677	NM_005319.3	67	Gct/Cct																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845973	151845973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	96	858	3	ENST00000262189.6:c.13039C>T	p.Pro4347Ser	p.P4347S	ENST00000262189	NM_170606.2	4347	Ccg/Tcg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151849897	151849897	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	45	655	0	ENST00000262189.6:c.12419A>C	p.Gln4140Pro	p.Q4140P	ENST00000262189	NM_170606.2	4140	cAg/cCg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500893	8500893	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	56	969	0	ENST00000356435.5:c.1989G>C	p.Leu663Phe	p.L663F	ENST00000356435		663	ttG/ttC																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209367	98209367	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45535032		P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	76	767	2	ENST00000331920.6:c.4171C>T	p.Arg1391Trp	p.R1391W	ENST00000331920	NM_000264.3	1391	Cgg/Tgg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44937723	44937723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	62	450	0	ENST00000377967.4:c.2911C>T	p.Arg971Cys	p.R971C	ENST00000377967	NM_021140.2	971	Cgt/Tgt																																																																														
ARAF	0	MSKCC	GRCh37	X	47422464	47422464	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	41	468	0	ENST00000377045.4:c.96+2T>C		p.X32_splice	ENST00000377045	NM_001654.4	32																																																																															
KDM5C	0	MSKCC	GRCh37	X	53253924	53253924	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	66	352	1	ENST00000375401.3:c.148G>A	p.Ala50Thr	p.A50T	ENST00000375401	NM_004187.3	50	Gcg/Acg																																																																														
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0020145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	336	943	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
PNRC1	0	MSKCC	GRCh37	6	89793686	89793686	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	92	608	0	ENST00000336032.3:c.755C>A	p.Pro252His	p.P252H	ENST00000336032	NM_006813.2	252	cCt/cAt																																																																														
MTOR	0	MSKCC	GRCh37	1	11317004	11317004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	95	601	1	ENST00000361445.4:c.490C>T	p.Arg164Trp	p.R164W	ENST00000361445	NM_004958.3	164	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087560	27087560	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	137	940	0	ENST00000324856.7:c.2134G>C	p.Gly712Arg	p.G712R	ENST00000324856	NM_006015.4	712	Gga/Cga																																																																														
TP53	0	MSKCC	GRCh37	17	7578389	7578390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0020145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	153	765	0	ENST00000269305.4:c.539_540dup	p.Arg181SerfsTer67	p.R181Sfs*67	ENST00000269305	NM_001126112.2	180	-/AG																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214838	36214888	+	inframe_deletion	In_Frame_Del	DEL	CTTCGAGGATTCGGATGACTCGGAGCCCGGGGGCCCCCCTGCTCCTCGGCG	CTTCGAGGATTCGGATGACTCGGAGCCCGGGGGCCCCCCTGCTCCTCGGCG	-			P-0020145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	677	1066	0	ENST00000222270.7:c.3264_3314del	p.Phe1089_Arg1105del	p.F1089_R1105del	ENST00000222270	NM_014727.1	1088	atCTTCGAGGATTCGGATGACTCGGAGCCCGGGGGCCCCCCTGCTCCTCGGCGt/att																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	76	551	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa																																																																														
NUF2	0	MSKCC	GRCh37	1	163295915	163295915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	109	1141	1	ENST00000271452.3:c.74G>T	p.Gly25Val	p.G25V	ENST00000271452	NM_145697.2	25	gGa/gTa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827316	72827316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	119	1020	1	ENST00000268489.5:c.9265G>A	p.Glu3089Lys	p.E3089K	ENST00000268489	NM_006885.3	3089	Gag/Aag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111404	56111405	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0020147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	137	545	0	ENST00000399503.3:c.4_5delinsAT	p.Ala2Met	p.A2M	ENST00000399503	NM_005921.1	2	GCg/ATg																																																																														
FLT4	0	MSKCC	GRCh37	5	180043438	180043438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	137	1143	2	ENST00000261937.6:c.3148G>A	p.Val1050Met	p.V1050M	ENST00000261937	NM_182925.4	1050	Gtg/Atg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396248	139396248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	384	1138	0	ENST00000277541.6:c.5590del	p.Gln1864ArgfsTer23	p.Q1864Rfs*23	ENST00000277541	NM_017617.3	1864	Cag/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0020148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	465	1157	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0020148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	85	864	1	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
AMER1	0	MSKCC	GRCh37	X	63412610	63412610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	146	552	1	ENST00000330258.3:c.557G>T	p.Gly186Val	p.G186V	ENST00000330258	NM_152424.3	186	gGg/gTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118365075	118365075	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	137	1199	1	ENST00000534358.1:c.5251A>T	p.Lys1751Ter	p.K1751*	ENST00000534358	NM_005933.3	1751	Aaa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092851	27092855	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCTGC	TCTGC	GCT			P-0020148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	55	1170	3	ENST00000324856.7:c.2872_2876delinsGCT	p.Ser958AlafsTer48	p.S958Afs*48	ENST00000324856	NM_006015.4	958	TCTGCa/GCTa																																																																														
SESN3	0	MSKCC	GRCh37	11	94918520	94918520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	24	1138	0	ENST00000536441.1:c.662C>T	p.Ser221Phe	p.S221F	ENST00000536441	NM_144665.3	221	tCc/tTc																																																																														
IRS2	0	MSKCC	GRCh37	13	110437546	110437546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	287	1261	0	ENST00000375856.3:c.855G>T	p.Glu285Asp	p.E285D	ENST00000375856	NM_003749.2	285	gaG/gaT																																																																														
SOX2	0	MSKCC	GRCh37	3	181430799	181430799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1368	268	1362	0	ENST00000325404.1:c.651G>C	p.Met217Ile	p.M217I	ENST00000325404	NM_003106.3	217	atG/atC																																																																														
TP63	0	MSKCC	GRCh37	3	189455611	189455628	+	inframe_deletion	In_Frame_Del	DEL	TTCCTCAGTCCAGAGGTT	TTCCTCAGTCCAGAGGTT	-			P-0020148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	95	1175	0	ENST00000264731.3:c.149_166del	p.Leu50_Phe55del	p.L50_F55del	ENST00000264731	NM_003722.4	49	TTCCTCAGTCCAGAGGTT/-																																																																														
PREX2	0	MSKCC	GRCh37	8	68999996	68999996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	159	1172	2	ENST00000288368.4:c.2065T>C	p.Phe689Leu	p.F689L	ENST00000288368	NM_024870.2	689	Ttc/Ctc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8449746	8449746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	113	1084	1	ENST00000356435.5:c.3967C>A	p.Arg1323Ser	p.R1323S	ENST00000356435		1323	Cgc/Agc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66231707	66231707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	51	737	1	ENST00000273854.3:c.1993G>A	p.Glu665Lys	p.E665K	ENST00000273854	NM_004439.5	665	Gaa/Aaa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390539	139390539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	54	964	1	ENST00000277541.6:c.7652C>T	p.Pro2551Leu	p.P2551L	ENST00000277541	NM_017617.3	2551	cCg/cTg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520724	176520724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	55	831	0	ENST00000292408.4:c.1467G>A	p.Met489Ile	p.M489I	ENST00000292408	NM_213647.1	489	atG/atA																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574004	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	79	970	3	ENST00000269305.4:c.1023_1024delCCinsTT	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	341	ttCCga/ttTTga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521384	8521384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	34	837	0	ENST00000356435.5:c.854G>A	p.Gly285Glu	p.G285E	ENST00000356435		285	gGa/gAa																																																																														
MGA	0	MSKCC	GRCh37	15	41961408	41961408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	63	678	0	ENST00000219905.7:c.316C>T	p.Pro106Ser	p.P106S	ENST00000219905	NM_001164273.1	106	Cct/Tct																																																																														
MYCL1	0	MSKCC	GRCh37	1	40366928	40366928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	51	729	0	ENST00000397332.2:c.269C>T	p.Pro90Leu	p.P90L	ENST00000397332	NM_001033082.2	90	cCc/cTc																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045954	26045954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	48	594	1	ENST00000540144.1:c.316G>A	p.Glu106Lys	p.E106K	ENST00000540144	NM_003531.2	106	Gaa/Aaa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857097	9857097	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	23	502	0	ENST00000330684.3:c.4304A>G	p.Lys1435Arg	p.K1435R	ENST00000330684	NM_001134407.1	1435	aAg/aGg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81962179	81962179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	73	881	1	ENST00000359376.3:c.2531C>T	p.Pro844Leu	p.P844L	ENST00000359376	NM_002661.3	844	cCc/cTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431588	49431588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	42	838	1	ENST00000301067.7:c.9551C>T	p.Ser3184Phe	p.S3184F	ENST00000301067	NM_003482.3	3184	tCc/tTc																																																																														
RET	0	MSKCC	GRCh37	10	43609087	43609087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	49	1003	0	ENST00000355710.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000355710	NM_020975.4	615	Gag/Aag																																																																														
CBL	0	MSKCC	GRCh37	11	119169212	119169212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	44	650	0	ENST00000264033.4:c.2396C>T	p.Ser799Phe	p.S799F	ENST00000264033	NM_005188.3	799	tCc/tTc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780275	9780275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	62	722	0	ENST00000377346.4:c.1445C>T	p.Pro482Leu	p.P482L	ENST00000377346	NM_005026.3	482	cCc/cTc																																																																														
SPEN	0	MSKCC	GRCh37	1	16257170	16257170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	74	879	0	ENST00000375759.3:c.4435G>A	p.Asp1479Asn	p.D1479N	ENST00000375759	NM_015001.2	1479	Gat/Aat																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101406	27101406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	73	605	0	ENST00000324856.7:c.4688C>T	p.Pro1563Leu	p.P1563L	ENST00000324856	NM_006015.4	1563	cCc/cTc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932082	36932082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	48	710	0	ENST00000361632.4:c.2387C>T	p.Pro796Leu	p.P796L	ENST00000361632		796	cCc/cTc																																																																														
CHEK1	0	MSKCC	GRCh37	11	125499337	125499337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	65	728	0	ENST00000428830.2:c.406C>T	p.Leu136Phe	p.L136F	ENST00000428830	NM_001114121.2	136	Ctt/Ttt																																																																														
ARID2	0	MSKCC	GRCh37	12	46230543	46230543	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	55	569	0	ENST00000334344.6:c.792G>A	p.Trp264Ter	p.W264*	ENST00000334344	NM_152641.2	264	tgG/tgA																																																																														
ARID2	0	MSKCC	GRCh37	12	46233249	46233249	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	62	573	1	ENST00000334344.6:c.1468C>T	p.Gln490Ter	p.Q490*	ENST00000334344	NM_152641.2	490	Caa/Taa																																																																														
ARID2	0	MSKCC	GRCh37	12	46285873	46285873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	98	768	0	ENST00000334344.6:c.5141C>T	p.Ser1714Phe	p.S1714F	ENST00000334344	NM_152641.2	1714	tCt/tTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416133	49416133	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	37	472	2	ENST00000301067.7:c.16342C>T	p.Arg5448Ter	p.R5448*	ENST00000301067	NM_003482.3	5448	Cga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425785	49425785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	54	729	0	ENST00000301067.7:c.12703C>T	p.Gln4235Ter	p.Q4235*	ENST00000301067	NM_003482.3	4235	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427180	49427180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	109	942	2	ENST00000301067.7:c.11308G>A	p.Gly3770Ser	p.G3770S	ENST00000301067	NM_003482.3	3770	Ggt/Agt																																																																														
MDM2	0	MSKCC	GRCh37	12	69233178	69233178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	38	530	0	ENST00000462284.1:c.1043C>T	p.Ser348Phe	p.S348F	ENST00000462284	NM_002392.5	348	tCt/tTt																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134219	41134219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	49	544	0	ENST00000379561.5:c.1409C>T	p.Ser470Phe	p.S470F	ENST00000379561	NM_002015.3	470	tCt/tTt																																																																														
TSHR	0	MSKCC	GRCh37	14	81606103	81606103	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	63	887	1	ENST00000298171.2:c.773G>A	p.Trp258Ter	p.W258*	ENST00000298171	NM_000369.2	258	tGg/tAg																																																																														
MGA	0	MSKCC	GRCh37	15	42034879	42034879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	48	731	0	ENST00000219905.7:c.4721C>T	p.Pro1574Leu	p.P1574L	ENST00000219905	NM_001164273.1	1574	cCa/cTa																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748906	43748906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	67	1053	0	ENST00000382044.4:c.1900C>T	p.Pro634Ser	p.P634S	ENST00000382044	NM_001141980.1	634	Ccg/Tcg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678335	88678335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	36	739	0	ENST00000360948.2:c.1201C>T	p.Pro401Ser	p.P401S	ENST00000360948	NM_001012338.2	401	Cca/Tca																																																																														
IGF1R	0	MSKCC	GRCh37	15	99482452	99482452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	46	690	0	ENST00000268035.6:c.3320C>T	p.Pro1107Leu	p.P1107L	ENST00000268035	NM_000875.3	1107	cCa/cTa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779599	3779599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	82	1115	1	ENST00000262367.5:c.5449C>T	p.Pro1817Ser	p.P1817S	ENST00000262367	NM_004380.2	1817	Ccg/Tcg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858332	9858332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	34	450	0	ENST00000330684.3:c.3069G>T	p.Gln1023His	p.Q1023H	ENST00000330684	NM_001134407.1	1023	caG/caT																																																																														
ERCC4	0	MSKCC	GRCh37	16	14020564	14020564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	65	814	0	ENST00000311895.7:c.535G>A	p.Glu179Lys	p.E179K	ENST00000311895	NM_005236.2	179	Gaa/Aaa																																																																														
NUP93	0	MSKCC	GRCh37	16	56868680	56868680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	48	744	0	ENST00000308159.5:c.1772G>A	p.Gly591Glu	p.G591E	ENST00000308159	NM_014669.4	591	gGa/gAa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350753	89350753	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	70	995	4	ENST00000301030.4:c.2197C>T	p.Arg733Ter	p.R733*	ENST00000301030	NM_001256183.1	733	Cga/Tga																																																																														
FANCA	0	MSKCC	GRCh37	16	89825076	89825076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	83	844	0	ENST00000389301.3:c.2890C>T	p.Leu964Phe	p.L964F	ENST00000389301	NM_000135.2	964	Ctc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577540	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	50	877	1	ENST00000269305.4:c.741_742delinsTT	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	247	aaCCgg/aaTTgg																																																																														
TCF3	0	MSKCC	GRCh37	19	1621185	1621185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	46	804	2	ENST00000344749.5:c.961C>T	p.Arg321Ter	p.R321*	ENST00000344749	NM_001136139.2	321	Cga/Tga																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210686	2210686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	86	959	1	ENST00000398665.3:c.1183C>T	p.Arg395Cys	p.R395C	ENST00000398665	NM_032482.2	395	Cgc/Tgc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224189	36224190	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	56	714	2	ENST00000222270.7:c.6739_6740delinsAA	p.Gly2247Lys	p.G2247K	ENST00000222270	NM_014727.1	2247	GGa/AAa																																																																														
AXL	0	MSKCC	GRCh37	19	41743976	41743976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	63	1031	0	ENST00000301178.4:c.911C>T	p.Pro304Leu	p.P304L	ENST00000301178	NM_021913.4	304	cCt/cTt																																																																														
POLD1	0	MSKCC	GRCh37	19	50918786	50918786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	73	1018	1	ENST00000440232.2:c.2656G>A	p.Glu886Lys	p.E886K	ENST00000440232	NM_002691.3	886	Gag/Aag																																																																														
ASXL2	0	MSKCC	GRCh37	2	25994308	25994308	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	51	475	1	ENST00000435504.4:c.504+1G>A		p.X168_splice	ENST00000435504		168																																																																															
ERBB4	0	MSKCC	GRCh37	2	212576775	212576775	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	25	644	0	ENST00000342788.4:c.1124G>A	p.Gly375Glu	p.G375E	ENST00000342788	NM_005235.2	375	gGg/gAg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022454	31022455	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TA			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	14	303	0	ENST00000375687.4:c.1939_1940delinsTA	p.Pro647Ter	p.P647*	ENST00000375687	NM_015338.5	647	CCg/TAg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41275253	41275254	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	33	534	2	ENST00000349496.5:c.1419_1420delinsTT	p.Arg474Ter	p.R474*	ENST00000349496	NM_001904.3	473	agCCga/agTTga																																																																														
SETD2	0	MSKCC	GRCh37	3	47164489	47164489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	57	615	0	ENST00000409792.3:c.1637C>T	p.Ser546Phe	p.S546F	ENST00000409792	NM_014159.6	546	tCt/tTt																																																																														
MITF	0	MSKCC	GRCh37	3	70014293	70014293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	41	899	0	ENST00000352241.4:c.1457C>T	p.Pro486Leu	p.P486L	ENST00000352241	NM_198159.2	486	cCc/cTc																																																																														
TP63	0	MSKCC	GRCh37	3	189582175	189582176	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	79	789	2	ENST00000264731.3:c.734_735delinsTT	p.Pro245Leu	p.P245L	ENST00000264731	NM_003722.4	245	cCC/cTT																																																																														
KDR	0	MSKCC	GRCh37	4	55976857	55976857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	51	841	0	ENST00000263923.4:c.1055C>G	p.Ala352Gly	p.A352G	ENST00000263923	NM_002253.2	352	gCg/gGg																																																																														
MSH3	0	MSKCC	GRCh37	5	79961043	79961043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	71	823	0	ENST00000265081.6:c.440C>T	p.Pro147Leu	p.P147L	ENST00000265081	NM_002439.4	147	cCt/cTt																																																																														
MSH3	0	MSKCC	GRCh37	5	80024709	80024709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	80	872	2	ENST00000265081.6:c.1493C>T	p.Pro498Leu	p.P498L	ENST00000265081	NM_002439.4	498	cCt/cTt																																																																														
APC	0	MSKCC	GRCh37	5	112173365	112173365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	40	592	1	ENST00000257430.4:c.2074C>T	p.Pro692Ser	p.P692S	ENST00000257430	NM_000038.5	692	Cct/Tct																																																																														
MDC1	0	MSKCC	GRCh37	6	30672410	30672410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	41	749	0	ENST00000376406.3:c.4550G>A	p.Gly1517Glu	p.G1517E	ENST00000376406	NM_014641.2	1517	gGa/gAa																																																																														
STK19	0	MSKCC	GRCh37	6	31940079	31940079	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	44	857	1	ENST00000375331.2:c.221G>A	p.Gly74Glu	p.G74E	ENST00000375331	NM_004197.1	74	gGa/gAa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93953241	93953241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	48	814	1	ENST00000369303.4:c.2900G>A	p.Gly967Glu	p.G967E	ENST00000369303	NM_004440.3	967	gGg/gAg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967867	93967867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	45	855	1	ENST00000369303.4:c.2060G>A	p.Gly687Glu	p.G687E	ENST00000369303	NM_004440.3	687	gGg/gAg																																																																														
FYN	0	MSKCC	GRCh37	6	112035550	112035550	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	52	511	0	ENST00000368678.4:c.344C>T	p.Ser115Leu	p.S115L	ENST00000368678		115	tCg/tTg																																																																														
ROS1	0	MSKCC	GRCh37	6	117708091	117708091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	47	774	0	ENST00000368508.3:c.2086C>T	p.Pro696Ser	p.P696S	ENST00000368508	NM_002944.2	696	Cca/Tca																																																																														
ROS1	0	MSKCC	GRCh37	6	117710701	117710701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	26	560	1	ENST00000368508.3:c.1571C>T	p.Ser524Phe	p.S524F	ENST00000368508	NM_002944.2	524	tCt/tTt																																																																														
ESR1	0	MSKCC	GRCh37	6	152419979	152419979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	52	841	0	ENST00000206249.3:c.1666G>A	p.Gly556Arg	p.G556R	ENST00000206249	NM_000125.3	556	Gga/Aga																																																																														
CARD11	0	MSKCC	GRCh37	7	2954927	2954927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	54	884	0	ENST00000396946.4:c.2783G>A	p.Gly928Glu	p.G928E	ENST00000396946	NM_032415.4	928	gGg/gAg																																																																														
CARD11	0	MSKCC	GRCh37	7	2979529	2979529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	54	736	0	ENST00000396946.4:c.718G>A	p.Glu240Lys	p.E240K	ENST00000396946	NM_032415.4	240	Gag/Aag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508962	106508962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	44	676	0	ENST00000359195.3:c.956G>A	p.Arg319Lys	p.R319K	ENST00000359195	NM_002649.2	319	aGg/aAg																																																																														
MET	0	MSKCC	GRCh37	7	116339822	116339822	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	60	707	1	ENST00000397752.3:c.684T>A	p.Phe228Leu	p.F228L	ENST00000397752	NM_000245.2	228	ttT/ttA																																																																														
MET	0	MSKCC	GRCh37	7	116380073	116380073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	77	866	0	ENST00000397752.3:c.1462C>T	p.Pro488Ser	p.P488S	ENST00000397752	NM_000245.2	488	Cca/Tca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878051	151878052	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	33	545	1	ENST00000262189.6:c.6893_6894delinsTT	p.Pro2298Leu	p.P2298L	ENST00000262189	NM_170606.2	2298	cCC/cTT																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23539044	23539044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	40	726	0	ENST00000380871.4:c.395C>T	p.Ser132Phe	p.S132F	ENST00000380871	NM_006167.3	132	tCc/tTc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981825	70981825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	41	1039	1	ENST00000276594.2:c.271G>A	p.Asp91Asn	p.D91N	ENST00000276594	NM_024504.3	91	Gat/Aat																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209681	98209681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	52	835	0	ENST00000331920.6:c.3857C>T	p.Pro1286Leu	p.P1286L	ENST00000331920	NM_000264.3	1286	cCc/cTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400999	139400999	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	37	757	0	ENST00000277541.6:c.3994T>C	p.Phe1332Leu	p.F1332L	ENST00000277541	NM_017617.3	1332	Ttc/Ctc																																																																														
GATA1	0	MSKCC	GRCh37	X	48650524	48650524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	62	447	0	ENST00000376670.3:c.494G>A	p.Gly165Asp	p.G165D	ENST00000376670	NM_002049.3	165	gGc/gAc																																																																														
AMER1	0	MSKCC	GRCh37	X	63411537	63411537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	41	476	1	ENST00000330258.3:c.1630C>T	p.Pro544Ser	p.P544S	ENST00000330258	NM_152424.3	544	Ccc/Tcc																																																																														
STAG2	0	MSKCC	GRCh37	X	123224520	123224520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	76	493	0	ENST00000218089.9:c.3373A>G	p.Ile1125Val	p.I1125V	ENST00000218089	NM_001042749.1	1125	Att/Gtt																																																																														
TOP1	0	MSKCC	GRCh37	20	39750723	39750723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	31	622	0	ENST00000361337.2:c.2123G>A	p.Arg708Gln	p.R708Q	ENST00000361337	NM_003286.2	708	cGa/cAa																																																																														
E2F3	0	MSKCC	GRCh37	6	20402834	20402836	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0020152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	10	51	1	ENST00000346618.3:c.385_387del	p.Gly129del	p.G129del	ENST00000346618	NM_001949.4	124	aGCGgc/agc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0020153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	10	497	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	16	1040	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																																																														
WT1	0	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	23	895	2	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	143	895	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0020154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	206	680	0				ENST00000310581	NM_198253.2																																																																																
ERCC2	0	MSKCC	GRCh37	19	45860613	45860614	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAG			P-0020157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	142	921	0	ENST00000391945.4:c.1390_1393dup	p.Asp465AlafsTer37	p.D465Afs*37	ENST00000391945	NM_000400.3	465	gac/gCTGGac																																																																														
ROS1	0	MSKCC	GRCh37	6	117663651	117663651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	59	596	0	ENST00000368508.3:c.4581G>A	p.Met1527Ile	p.M1527I	ENST00000368508	NM_002944.2	1527	atG/atA																																																																														
PTPRD	0	MSKCC	GRCh37	9	8524992	8524992	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	75	466	0	ENST00000356435.5:c.612A>C	p.Lys204Asn	p.K204N	ENST00000356435		204	aaA/aaC																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TGT			P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	112	808	0	ENST00000269571.5:c.2326_2327insTGT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTGTgt																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	155	817	3	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10249155	10249155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	68	789	0	ENST00000340748.4:c.4027G>A	p.Val1343Met	p.V1343M	ENST00000340748		1343	Gtg/Atg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980846	40980846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	129	691	0	ENST00000373198.4:c.1640A>G	p.Asn547Ser	p.N547S	ENST00000373198	NM_133170.3	547	aAt/aGt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1955162	1955162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	114	752	1	ENST00000382891.5:c.2249C>T	p.Thr750Ile	p.T750I	ENST00000382891	NM_133335.3	750	aCt/aTt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32190317	32190317	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	71	519	0	ENST00000375023.3:c.422del	p.Pro141HisfsTer111	p.P141Hfs*111	ENST00000375023	NM_004557.3	141	cCa/ca																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066693	94066693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	97	655	0	ENST00000369303.4:c.1066G>T	p.Asp356Tyr	p.D356Y	ENST00000369303	NM_004440.3	356	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	12	759	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	0	MSKCC	GRCh37	19	1220594	1220595	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0020160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	80	831	0	ENST00000326873.7:c.614_615del	p.Ala205GlyfsTer60	p.A205Gfs*60	ENST00000326873	NM_000455.4	204	ttCGcg/ttcg																																																																														
SOS1	0	MSKCC	GRCh37	2	39237746	39237746	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	17	621	0	ENST00000402219.2:c.2489A>G	p.Asn830Ser	p.N830S	ENST00000402219	NM_005633.3	830	aAc/aGc																																																																														
MYD88	0	MSKCC	GRCh37	3	38181472	38181472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	31	799	1	ENST00000396334.3:c.485C>T	p.Thr162Ile	p.T162I	ENST00000396334	NM_002468.4	162	aCa/aTa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247385	153247385	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0020160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	12	477	0	ENST00000281708.4:c.1419-2A>G		p.X473_splice	ENST00000281708	NM_033632.3	473																																																																															
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	281	742	0	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	321	614	1	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87636326	87636326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	266	838	1	ENST00000277120.3:c.2491C>A	p.Pro831Thr	p.P831T	ENST00000277120		831	Ccg/Acg																																																																														
MED12	0	MSKCC	GRCh37	X	70342373	70342373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	261	599	5	ENST00000374080.3:c.1264C>T	p.Arg422Trp	p.R422W	ENST00000374080		422	Cgg/Tgg																																																																														
KIT	0	MSKCC	GRCh37	4	55593606	55593614	+	inframe_deletion	In_Frame_Del	DEL	AAGGTTGTT	AAGGTTGTT	-			P-0020162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	209	636	0	ENST00000288135.5:c.1672_1680del	p.Lys558_Val560del	p.K558_V560del	ENST00000288135	NM_000222.2	558	AAGGTTGTT/-																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226826	2226826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	57	400	4	ENST00000398665.3:c.4306G>A	p.Gly1436Arg	p.G1436R	ENST00000398665	NM_032482.2	1436	Gga/Aga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427051	49427064	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGCTGCAACACA	GCTGCTGCAACACA	-			P-0020167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	196	449	0	ENST00000301067.7:c.11424_11437del	p.Val3809AlafsTer198	p.V3809Afs*198	ENST00000301067	NM_003482.3	3808	gcTGTGTTGCAGCAGCag/gcag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440064	49440065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	316	672	0	ENST00000301067.7:c.4561dup	p.Ile1521AsnfsTer7	p.I1521Nfs*7	ENST00000301067	NM_003482.3	1521	atc/aAtc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52597379	52597380	+	stop_gained,frameshift_variant,splice_region_variant	Nonsense_Mutation	INS	-	-	CTCA			P-0020167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	303	625	0	ENST00000394830.3:c.3927_3930dup	p.Ser1311Ter	p.S1311*	ENST00000394830	NM_018313.4	1310	-/TGAG																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902676	1902676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	354	732	5	ENST00000382891.5:c.295C>T	p.Arg99Cys	p.R99C	ENST00000382891	NM_133335.3	99	Cgt/Tgt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132522	11132522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	68	890	0	ENST00000344626.4:c.2738C>T	p.Pro913Leu	p.P913L	ENST00000344626	NM_003072.3	913	cCg/cTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214619	5214619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	58	890	3	ENST00000357368.4:c.4447C>T	p.Arg1483Trp	p.R1483W	ENST00000357368	NM_002850.3	1483	Cgg/Tgg																																																																														
SOX17	0	MSKCC	GRCh37	8	55371942	55371942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	69	664	0	ENST00000297316.4:c.632C>T	p.Ala211Val	p.A211V	ENST00000297316	NM_022454.3	211	gCg/gTg																																																																														
ATM	0	MSKCC	GRCh37	11	108143278	108143278	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	34	564	1	ENST00000278616.4:c.3097A>T	p.Lys1033Ter	p.K1033*	ENST00000278616	NM_000051.3	1033	Aaa/Taa																																																																														
FLT1	0	MSKCC	GRCh37	13	28959029	28959031	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0020169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	18	448	0	ENST00000282397.4:c.2107_2109del	p.Gln703del	p.Q703del	ENST00000282397	NM_002019.4	703	CAA/-																																																																														
ALK	0	MSKCC	GRCh37	2	29474003	29474003	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	32	787	2	ENST00000389048.3:c.2172G>T	p.Gln724His	p.Q724H	ENST00000389048	NM_004304.4	724	caG/caT																																																																														
KDR	0	MSKCC	GRCh37	4	55972082	55972082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	18	587	2	ENST00000263923.4:c.1562C>T	p.Ala521Val	p.A521V	ENST00000263923	NM_002253.2	521	gCg/gTg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244997	46244997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	387	647	0	ENST00000334344.6:c.3091C>T	p.Gln1031Ter	p.Q1031*	ENST00000334344	NM_152641.2	1031	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089778	27089778	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	127	543	1	ENST00000324856.7:c.2732+2T>A		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																															
CSDE1	0	MSKCC	GRCh37	1	115282450	115282450	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	120	649	0	ENST00000438362.2:c.200C>A	p.Ser67Ter	p.S67*	ENST00000438362	NM_001242891.1	67	tCa/tAa																																																																														
RET	0	MSKCC	GRCh37	10	43601870	43601870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	120	666	0	ENST00000355710.3:c.914C>T	p.Pro305Leu	p.P305L	ENST00000355710	NM_020975.4	305	cCt/cTt																																																																														
CBL	0	MSKCC	GRCh37	11	119156109	119156109	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	110	686	0	ENST00000264033.4:c.1777del	p.Arg593GlyfsTer22	p.R593Gfs*22	ENST00000264033	NM_005188.3	592	Ccc/cc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67477192	67477192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	96	465	0	ENST00000327367.4:c.999G>C	p.Lys333Asn	p.K333N	ENST00000327367	NM_005902.3	333	aaG/aaC																																																																														
TP53	0	MSKCC	GRCh37	17	7577599	7577608	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAGAGCCAAC	CAGAGCCAAC	-			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	230	651	0	ENST00000269305.4:c.673_682del	p.Val225ThrfsTer19	p.V225Tfs*19	ENST00000269305	NM_001126112.2	225	GTTGGCTCTGac/ac																																																																														
NF1	0	MSKCC	GRCh37	17	29556484	29556484	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	229	349	0	ENST00000358273.4:c.2850+1G>T		p.X950_splice	ENST00000358273	NM_001042492.2	950																																																																															
NCOA3	0	MSKCC	GRCh37	20	46268381	46268381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	232	588	0	ENST00000371998.3:c.2768C>T	p.Pro923Leu	p.P923L	ENST00000371998		923	cCa/cTa																																																																														
FAT1	0	MSKCC	GRCh37	4	187527226	187527226	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	101	526	0	ENST00000441802.2:c.10348C>G	p.Gln3450Glu	p.Q3450E	ENST00000441802	NM_005245.3	3450	Cag/Gag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499772	8499772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020171-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	104	611	0	ENST00000356435.5:c.2197C>G	p.Arg733Gly	p.R733G	ENST00000356435		733	Cgc/Ggc																																																																														
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	215	881	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	104	834	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
DIS3	0	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	80	704	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																														
PTPRT	0	MSKCC	GRCh37	20	40770588	40770588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	133	722	1	ENST00000373198.4:c.2794C>T	p.Arg932Cys	p.R932C	ENST00000373198	NM_133170.3	932	Cgc/Tgc																																																																														
MYCL1	0	MSKCC	GRCh37	1	40366871	40366871	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	120	913	0	ENST00000397332.2:c.326C>G	p.Ser109Trp	p.S109W	ENST00000397332	NM_001033082.2	109	tCg/tGg																																																																														
IL10	0	MSKCC	GRCh37	1	206944257	206944257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	170	539	0	ENST00000423557.1:c.373C>T	p.Arg125Cys	p.R125C	ENST00000423557	NM_000572.2	125	Cgc/Tgc																																																																														
FH	0	MSKCC	GRCh37	1	241669468	241669468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	34	447	0	ENST00000366560.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000366560	NM_000143.3	247	Gaa/Aaa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445224	49445224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	105	998	0	ENST00000301067.7:c.2242G>C	p.Glu748Gln	p.E748Q	ENST00000301067	NM_003482.3	748	Gag/Cag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911151	32911151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	41	851	1	ENST00000380152.3:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000380152		887	Gag/Aag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934806	9934806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	139	841	0	ENST00000330684.3:c.1484G>A	p.Gly495Glu	p.G495E	ENST00000330684	NM_001134407.1	495	gGa/gAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577527	7577534	+	frameshift_variant	Frame_Shift_Del	DEL	GGATGGGC	GGATGGGC	-			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	190	871	0	ENST00000269305.4:c.747_754del	p.Arg249SerfsTer12	p.R249Sfs*12	ENST00000269305	NM_001126112.2	249	agGCCCATCCtc/agtc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12044551	12044551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	163	850	0	ENST00000353533.5:c.1174C>A	p.Pro392Thr	p.P392T	ENST00000353533	NM_003010.3	392	Ccc/Acc																																																																														
NF1	0	MSKCC	GRCh37	17	29556262	29556262	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	192	778	0	ENST00000358273.4:c.2629A>T	p.Met877Leu	p.M877L	ENST00000358273	NM_001042492.2	877	Atg/Ttg																																																																														
NF1	0	MSKCC	GRCh37	17	29560068	29560068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	117	571	0	ENST00000358273.4:c.3545T>G	p.Val1182Gly	p.V1182G	ENST00000358273	NM_001042492.2	1182	gTt/gGt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243610	41243610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	146	936	0	ENST00000357654.3:c.3938A>T	p.Gln1313Leu	p.Q1313L	ENST00000357654	NM_007294.3	1313	cAg/cTg																																																																														
IRS1	0	MSKCC	GRCh37	2	227663165	227663166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	169	764	0	ENST00000305123.5:c.289dup	p.Ala97GlyfsTer22	p.A97Gfs*22	ENST00000305123	NM_005544.2	97	gcg/gGcg																																																																														
IL7R	0	MSKCC	GRCh37	5	35873601	35873601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	44	428	0	ENST00000303115.3:c.557C>A	p.Thr186Lys	p.T186K	ENST00000303115	NM_002185.3	186	aCa/aAa																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045853	26045853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	310	789	0	ENST00000540144.1:c.215T>A	p.Val72Glu	p.V72E	ENST00000540144	NM_003531.2	72	gTg/gAg																																																																														
MDC1	0	MSKCC	GRCh37	6	30672870	30672870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	209	987	0	ENST00000376406.3:c.4090G>A	p.Glu1364Lys	p.E1364K	ENST00000376406	NM_014641.2	1364	Gaa/Aaa																																																																														
ROS1	0	MSKCC	GRCh37	6	117687355	117687355	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	140	611	0	ENST00000368508.3:c.2696A>G	p.Asn899Ser	p.N899S	ENST00000368508	NM_002944.2	899	aAt/aGt																																																																														
HGF	0	MSKCC	GRCh37	7	81350112	81350113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	115	728	0	ENST00000222390.5:c.1219dup	p.Arg407LysfsTer28	p.R407Kfs*28	ENST00000222390	NM_000601.4	407	aga/aAga																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859588	151859588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	147	622	0	ENST00000262189.6:c.11074G>A	p.Ala3692Thr	p.A3692T	ENST00000262189	NM_170606.2	3692	Gca/Aca																																																																														
MED12	0	MSKCC	GRCh37	X	70342696	70342696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	87	798	0	ENST00000374080.3:c.1457G>C	p.Gly486Ala	p.G486A	ENST00000374080		486	gGa/gCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	127	792	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	39	944	0	ENST00000269305.4:c.736A>C	p.Met246Leu	p.M246L	ENST00000269305	NM_001126112.2	246	Atg/Ctg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106782	27106782	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	115	889	0	ENST00000324856.7:c.6393del	p.Asn2131LysfsTer4	p.N2131Kfs*4	ENST00000324856	NM_006015.4	2131	aaT/aa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120480501	120480501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	89	592	0	ENST00000256646.2:c.3316G>A	p.Asp1106Asn	p.D1106N	ENST00000256646	NM_024408.3	1106	Gac/Aac																																																																														
APC	0	MSKCC	GRCh37	5	112176740	112176740	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	70	524	0	ENST00000257430.4:c.5449A>C	p.Lys1817Gln	p.K1817Q	ENST00000257430	NM_000038.5	1817	Aaa/Caa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	455	655	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	283	667	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																														
MSH3	0	MSKCC	GRCh37	5	79970865	79970865	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	54	707	0	ENST00000265081.6:c.1091C>G	p.Ser364Cys	p.S364C	ENST00000265081	NM_002439.4	364	tCt/tGt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0020178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	105	600	0	ENST00000399503.3:c.819_820delAG	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56180584	56180584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	145	691	0	ENST00000399503.3:c.3913A>G	p.Asn1305Asp	p.N1305D	ENST00000399503	NM_005921.1	1305	Aac/Gac																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			975	393	876	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			971	452	912	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521711	89521711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			722	272	781	1	ENST00000336596.2:c.2788G>A	p.Glu930Lys	p.E930K	ENST00000336596	NM_005233.5	930	Gaa/Aaa																																																																														
JAK1	0	MSKCC	GRCh37	1	65330546	65330546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			649	698	801	0	ENST00000342505.4:c.1100C>T	p.Ser367Phe	p.S367F	ENST00000342505	NM_002227.2	367	tCt/tTt																																																																														
POLE	0	MSKCC	GRCh37	12	133202301	133202301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			921	347	878	0	ENST00000320574.5:c.6587C>T	p.Ser2196Phe	p.S2196F	ENST00000320574	NM_006231.2	2196	tCc/tTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101468	27101468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	1167	788	1	ENST00000324856.7:c.4750C>T	p.Gln1584Ter	p.Q1584*	ENST00000324856	NM_006015.4	1584	Cag/Tag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636820	8636820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	300	720	3	ENST00000356435.5:c.89C>T	p.Pro30Leu	p.P30L	ENST00000356435		30	cCc/cTc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4102441	4102441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			907	347	802	0	ENST00000262948.5:c.461C>T	p.Ser154Phe	p.S154F	ENST00000262948	NM_030662.3	154	tCc/tTc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212295705	212295705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			582	180	753	0	ENST00000342788.4:c.2608G>A	p.Gly870Arg	p.G870R	ENST00000342788	NM_005235.2	870	Gga/Aga																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576148	88576148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			784	395	927	0	ENST00000360948.2:c.1525C>T	p.Pro509Ser	p.P509S	ENST00000360948	NM_001012338.2	509	Cct/Tct																																																																														
NCOA3	0	MSKCC	GRCh37	20	46275850	46275850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			877	286	872	1	ENST00000371998.3:c.3286C>T	p.Gln1096Ter	p.Q1096*	ENST00000371998		1096	Caa/Taa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66270180	66270180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	201	480	0	ENST00000273854.3:c.1702G>A	p.Asp568Asn	p.D568N	ENST00000273854	NM_004439.5	568	Gat/Aat																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45651315	45651315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			787	343	746	1	ENST00000407780.3:c.710G>A	p.Gly237Glu	p.G237E	ENST00000407780	NM_001283052.1	237	gGa/gAa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520241	176520241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			871	342	932	0	ENST00000292408.4:c.1160C>T	p.Ala387Val	p.A387V	ENST00000292408	NM_213647.1	387	gCc/gTc																																																																														
FLT1	0	MSKCC	GRCh37	13	28891642	28891642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			837	309	822	0	ENST00000282397.4:c.3379C>T	p.Pro1127Ser	p.P1127S	ENST00000282397	NM_002019.4	1127	Cct/Tct																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993833	72993833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	229	580	0	ENST00000268489.5:c.212C>T	p.Pro71Leu	p.P71L	ENST00000268489	NM_006885.3	71	cCc/cTc																																																																														
PAK1	0	MSKCC	GRCh37	11	77047151	77047151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			745	303	756	0	ENST00000356341.3:c.1393C>T	p.Leu465Phe	p.L465F	ENST00000356341	NM_002576.4	465	Ctc/Ttc																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66520180	66520180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			679	243	706	4	ENST00000358598.2:c.464C>T	p.Ser155Leu	p.S155L	ENST00000358598	NM_212471.2	155	tCg/tTg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98238322	98238323	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	202	559	0	ENST00000331920.6:c.1721_1722delinsTT	p.Ser574Phe	p.S574F	ENST00000331920	NM_000264.3	574	tCC/tTT																																																																														
RET	0	MSKCC	GRCh37	10	43609942	43609942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			955	393	1026	0	ENST00000355710.3:c.1894G>A	p.Glu632Lys	p.E632K	ENST00000355710	NM_020975.4	632	Gag/Aag																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850663	63850663	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			598	224	615	0	ENST00000279873.7:c.1441C>T	p.Gln481Ter	p.Q481*	ENST00000279873	NM_032199.2	481	Cag/Tag																																																																														
CBL	0	MSKCC	GRCh37	11	119077177	119077177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			741	341	742	1	ENST00000264033.4:c.50C>A	p.Ser17Tyr	p.S17Y	ENST00000264033	NM_005188.3	17	tCc/tAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434130	49434130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			749	359	727	0	ENST00000301067.7:c.7423C>T	p.Pro2475Ser	p.P2475S	ENST00000301067	NM_003482.3	2475	Cct/Tct																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856608	111856608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			364	218	321	0	ENST00000341259.2:c.659G>A	p.Gly220Glu	p.G220E	ENST00000341259	NM_005475.2	220	gGg/gAg																																																																														
RB1	0	MSKCC	GRCh37	13	49030468	49030468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	189	736	0	ENST00000267163.4:c.1943C>T	p.Ser648Leu	p.S648L	ENST00000267163	NM_000321.2	648	tCa/tTa																																																																														
RAD51B	0	MSKCC	GRCh37	14	68352674	68352674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199981178		P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	144	641	0	ENST00000487270.1:c.541C>T	p.Arg181Trp	p.R181W	ENST00000487270	NM_133509.3	181	Cgg/Tgg																																																																														
MGA	0	MSKCC	GRCh37	15	42028729	42028729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	272	779	0	ENST00000219905.7:c.4267C>T	p.Pro1423Ser	p.P1423S	ENST00000219905	NM_001164273.1	1423	Cct/Tct																																																																														
MGA	0	MSKCC	GRCh37	15	42059314	42059314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	226	529	1	ENST00000219905.7:c.9034C>T	p.Pro3012Ser	p.P3012S	ENST00000219905	NM_001164273.1	3012	Cct/Tct																																																																														
CD276	0	MSKCC	GRCh37	15	73995358	73995358	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	203	426	0	ENST00000318443.5:c.664G>T	p.Val222Leu	p.V222L	ENST00000318443	NM_001024736.1	222	Gtg/Ttg																																																																														
TSC2	0	MSKCC	GRCh37	16	2122360	2122360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			758	317	708	0	ENST00000219476.3:c.2216C>T	p.Ser739Phe	p.S739F	ENST00000219476	NM_000548.3	739	tCc/tTc																																																																														
CYLD	0	MSKCC	GRCh37	16	50813746	50813746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			887	399	945	1	ENST00000398568.2:c.1300C>T	p.Pro434Ser	p.P434S	ENST00000398568	NM_001042412.1	434	Cca/Tca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829653	72829653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			824	377	891	2	ENST00000268489.5:c.6928G>A	p.Gly2310Arg	p.G2310R	ENST00000268489	NM_006885.3	2310	Gga/Aga																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832610	72832610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	118	360	0	ENST00000268489.5:c.3971C>T	p.Thr1324Ile	p.T1324I	ENST00000268489	NM_006885.3	1324	aCc/aTc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347244	89347245	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			713	269	719	2	ENST00000301030.4:c.5705_5706delinsTT	p.Ser1902Phe	p.S1902F	ENST00000301030	NM_001256183.1	1902	tCC/tTT																																																																														
TP53	0	MSKCC	GRCh37	17	7577541	7577541	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			989	394	871	0	ENST00000269305.4:c.740A>C	p.Asn247Thr	p.N247T	ENST00000269305	NM_001126112.2	247	aAc/aCc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10260151	10260151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			925	336	763	0	ENST00000340748.4:c.2516C>T	p.Pro839Leu	p.P839L	ENST00000340748		839	cCc/cTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228800	36228800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	422	905	0	ENST00000222270.7:c.7699C>T	p.Arg2567Cys	p.R2567C	ENST00000222270	NM_014727.1	2567	Cgt/Tgt																																																																														
POLD1	0	MSKCC	GRCh37	19	50917021	50917021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			741	263	728	0	ENST00000440232.2:c.2273C>T	p.Ser758Phe	p.S758F	ENST00000440232	NM_002691.3	758	tCc/tTc																																																																														
POLD1	0	MSKCC	GRCh37	19	50919774	50919774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			723	302	718	0	ENST00000440232.2:c.2942C>T	p.Ala981Val	p.A981V	ENST00000440232	NM_002691.3	981	gCt/gTt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021550	31021550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			802	301	751	0	ENST00000375687.4:c.1549C>T	p.Gln517Ter	p.Q517*	ENST00000375687	NM_015338.5	517	Cag/Tag																																																																														
EP300	0	MSKCC	GRCh37	22	41545097	41545097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			874	380	885	1	ENST00000263253.7:c.2297C>T	p.Pro766Leu	p.P766L	ENST00000263253	NM_001429.3	766	cCt/cTt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468364	89468364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			276	104	329	0	ENST00000336596.2:c.1898G>A	p.Gly633Glu	p.G633E	ENST00000336596	NM_005233.5	633	gGa/gAa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521619	89521619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	229	613	1	ENST00000336596.2:c.2696C>T	p.Ser899Leu	p.S899L	ENST00000336596	NM_005233.5	899	tCa/tTa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851769	134851769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			760	341	805	1	ENST00000398015.3:c.1175C>T	p.Ser392Phe	p.S392F	ENST00000398015	NM_004441.4	392	tCc/tTc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911655	134911655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	221	503	0	ENST00000398015.3:c.2120C>T	p.Ser707Phe	p.S707F	ENST00000398015	NM_004441.4	707	tCt/tTt																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665252	138665252	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	426	966	0	ENST00000330315.3:c.313A>T	p.Asn105Tyr	p.N105Y	ENST00000330315	NM_023067.3	105	Aac/Tac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178938933	178938933	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			527	221	548	0	ENST00000263967.3:c.2175T>A	p.Asp725Glu	p.D725E	ENST00000263967	NM_006218.2	725	gaT/gaA																																																																														
PLK2	0	MSKCC	GRCh37	5	57751230	57751230	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	225	563	1	ENST00000274289.3:c.1637A>T	p.Tyr546Phe	p.Y546F	ENST00000274289	NM_006622.3	546	tAt/tTt																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149501595	149501595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	197	479	0	ENST00000261799.4:c.2192C>T	p.Ser731Phe	p.S731F	ENST00000261799	NM_002609.3	731	tCc/tTc																																																																														
NSD1	0	MSKCC	GRCh37	5	176562495	176562495	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			961	386	971	0	ENST00000439151.2:c.391T>C	p.Ser131Pro	p.S131P	ENST00000439151	NM_022455.4	131	Tct/Cct																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200308	138200308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			594	264	556	1	ENST00000237289.4:c.1726C>T	p.Pro576Ser	p.P576S	ENST00000237289	NM_001270507.1	576	Ccg/Tcg																																																																														
CARD11	0	MSKCC	GRCh37	7	2984094	2984094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			655	230	543	1	ENST00000396946.4:c.436G>A	p.Asp146Asn	p.D146N	ENST00000396946	NM_032415.4	146	Gac/Aac																																																																														
JAK2	0	MSKCC	GRCh37	9	5080342	5080342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			575	118	583	2	ENST00000381652.3:c.2245G>A	p.Gly749Arg	p.G749R	ENST00000381652	NM_004972.3	749	Gga/Aga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518284	8518284	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	185	431	0	ENST00000356435.5:c.1107A>C	p.Glu369Asp	p.E369D	ENST00000356435		369	gaA/gaC																																																																														
PTCH1	0	MSKCC	GRCh37	9	98221991	98221992	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	289	625	2	ENST00000331920.6:c.2777_2778delinsAA	p.Trp926Ter	p.W926*	ENST00000331920	NM_000264.3	926	tGG/tAA																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164455	36164455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020180-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			396	146	380	0	ENST00000300305.3:c.1420G>A	p.Glu474Lys	p.E474K	ENST00000300305		474	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	565	987	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971026	21971026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	187	731	0	ENST00000304494.5:c.332G>T	p.Gly111Val	p.G111V	ENST00000304494	NM_000077.4	111	gGc/gTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971026	21971026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	187	731	0	ENST00000304494.5:c.332G>T	p.Gly111Val	p.G111V	ENST00000304494	NM_000077.4	111	gGc/gTc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30068919	30068919	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	55	1038	0	ENST00000331968.5:c.2010C>G	p.Ile670Met	p.I670M	ENST00000331968	NM_002742.2	670	atC/atG																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986630	36986631	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGC			P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	31	274	0	ENST00000354822.5:c.1055_1058dup	p.Ser353ArgfsTer87	p.S353Rfs*87	ENST00000354822	NM_001079668.2	353	agc/agGCAGc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349904	89349904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141871215		P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	292	1193	0	ENST00000301030.4:c.3046G>A	p.Asp1016Asn	p.D1016N	ENST00000301030	NM_001256183.1	1016	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7579355	7579363	+	inframe_deletion	In_Frame_Del	DEL	AGACGGAAA	AGACGGAAA	-			P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	201	961	0	ENST00000269305.4:c.324_332del	p.Phe109_Leu111del	p.F109_L111del	ENST00000269305	NM_001126112.2	108	ggTTTCCGTCTg/ggg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554635	63554635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	94	776	0	ENST00000307078.5:c.104C>T	p.Pro35Leu	p.P35L	ENST00000307078	NM_004655.3	35	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	32	1036	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988221	36988221	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	27	681	0	ENST00000354822.5:c.432C>G	p.Tyr144Ter	p.Y144*	ENST00000354822	NM_001079668.2	144	taC/taG																																																																														
TBX3	0	MSKCC	GRCh37	12	115120810	115120810	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	23	619	0	ENST00000257566.3:c.196delG	p.Asp66IlefsTer22	p.D66Ifs*22	ENST00000257566	NM_016569.3	66	Gat/at																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	43	1334	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
CARD11	0	MSKCC	GRCh37	7	2984085	2984085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	27	606	1	ENST00000396946.4:c.445C>T	p.Arg149Cys	p.R149C	ENST00000396946	NM_032415.4	149	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	9	755	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0020188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	15	545	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0020189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	244	924	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152055	11152055	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	337	825	2	ENST00000344626.4:c.4243C>T	p.Arg1415Ter	p.R1415*	ENST00000344626	NM_003072.3	1415	Cga/Tga																																																																														
ARID2	0	MSKCC	GRCh37	12	46244853	46244853	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	410	1189	0	ENST00000334344.6:c.2947C>T	p.Gln983Ter	p.Q983*	ENST00000334344	NM_152641.2	983	Caa/Taa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	216	720	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46603791	46603791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	150	1073	0	ENST00000263734.3:c.1148C>T	p.Ser383Phe	p.S383F	ENST00000263734	NM_001430.4	383	tCt/tTt																																																																														
HGF	0	MSKCC	GRCh37	7	81358955	81358955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	250	963	3	ENST00000222390.5:c.1006G>A	p.Glu336Lys	p.E336K	ENST00000222390	NM_000601.4	336	Gag/Aag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945675	151945677	+	frameshift_variant	Frame_Shift_Del	DEL	AAT	AAT	C			P-0020190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	46	1226	0	ENST00000262189.6:c.1842_1844delinsG	p.Leu615GlyfsTer6	p.L615Gfs*6	ENST00000262189	NM_170606.2	614	gaATTg/gaGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	225	773	1	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	24	733	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	25	834	0	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																														
HGF	0	MSKCC	GRCh37	7	81334738	81334738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	89	867	1	ENST00000222390.5:c.1978G>T	p.Gly660Trp	p.G660W	ENST00000222390	NM_000601.4	660	Ggg/Tgg																																																																														
PMS1	0	MSKCC	GRCh37	2	190719140	190719140	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	19	541	0	ENST00000441310.2:c.1142C>G	p.Ser381Ter	p.S381*	ENST00000441310	NM_000534.4	381	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7579581	7579581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	24	786	0	ENST00000269305.4:c.106C>G	p.Pro36Ala	p.P36A	ENST00000269305	NM_001126112.2	36	Ccg/Gcg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41246277	41246277	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	29	921	1	ENST00000357654.3:c.1271del	p.Gly424ValfsTer6	p.G424Vfs*6	ENST00000357654	NM_007294.3	424	gGt/gt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944516	40944516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	42	744	0	ENST00000373198.4:c.1986C>A	p.His662Gln	p.H662Q	ENST00000373198	NM_133170.3	662	caC/caA																																																																														
EPHA7	0	MSKCC	GRCh37	6	93953249	93953249	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	21	825	1	ENST00000369303.4:c.2892G>T	p.Met964Ile	p.M964I	ENST00000369303	NM_004440.3	964	atG/atT																																																																														
TEK	0	MSKCC	GRCh37	9	27157952	27157952	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	77	808	0	ENST00000380036.4:c.176G>C	p.Arg59Thr	p.R59T	ENST00000380036	NM_000459.3	59	aGg/aCg																																																																														
RBM10	0	MSKCC	GRCh37	X	47045858	47045883	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCTCCCTCACACAGGCCCAAACACG	GCCTCCCTCACACAGGCCCAAACACG	A			P-0020192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	36	597	0	ENST00000329236.7:c.2434-15_2444delinsA		p.X812_splice	ENST00000329236	NM_001204466.1	812																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	304	839	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	351	932	0	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399158	139399158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	154	856	0	ENST00000277541.6:c.4985G>A	p.Arg1662Gln	p.R1662Q	ENST00000277541	NM_017617.3	1662	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0020215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	45	426	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89653784	89653785	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0020215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	33	457	0	ENST00000371953.3:c.82_83insCT	p.Ile28ThrfsTer27	p.I28Tfs*27	ENST00000371953	NM_000314.4	28	att/aCTtt																																																																														
ETV6	0	MSKCC	GRCh37	12	11905489	11905489	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	54	378	0	ENST00000396373.4:c.139T>G	p.Ser47Ala	p.S47A	ENST00000396373	NM_001987.4	47	Tcg/Gcg																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0020217-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	33	513	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	750	511	1	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0020218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	15	43	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
IRF4	0	MSKCC	GRCh37	6	394946	394946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	263	537	0	ENST00000380956.4:c.342C>A	p.Ser114Arg	p.S114R	ENST00000380956	NM_001195286.1	114	agC/agA																																																																														
BRIP1	0	MSKCC	GRCh37	17	59853790	59853790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	279	609	2	ENST00000259008.2:c.2069G>A	p.Gly690Glu	p.G690E	ENST00000259008	NM_032043.2	690	gGa/gAa																																																																														
AURKA	0	MSKCC	GRCh37	20	54956557	54956557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	50	679	1	ENST00000312783.6:c.637G>T	p.Ala213Ser	p.A213S	ENST00000312783	NM_198436.1	213	Gca/Tca																																																																														
BRAF	0	MSKCC	GRCh37	7	140439713	140439713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	278	508	0	ENST00000288602.6:c.2026C>G	p.Pro676Ala	p.P676A	ENST00000288602	NM_004333.4	676	Cca/Gca																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061141	38061141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	76	254	0	ENST00000250448.2:c.848G>A	p.Gly283Glu	p.G283E	ENST00000250448	NM_004496.3	283	gGg/gAg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061154	38061154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	91	292	0	ENST00000250448.2:c.835G>A	p.Gly279Arg	p.G279R	ENST00000250448	NM_004496.3	279	Ggg/Agg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38064160	38064160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	249	656	1	ENST00000250448.2:c.18G>T	p.Lys6Asn	p.K6N	ENST00000250448	NM_004496.3	6	aaG/aaT																																																																														
CDH1	0	MSKCC	GRCh37	16	68857509	68857516	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGAATT	GAGGAATT	-			P-0020220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	202	631	0	ENST00000261769.5:c.2144_2151del	p.Gly715AlafsTer30	p.G715Afs*30	ENST00000261769	NM_004360.3	715	gGAGGAATT/g																																																																														
MSH6	0	MSKCC	GRCh37	2	48026323	48026323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	158	499	0	ENST00000234420.5:c.1201G>A	p.Asp401Asn	p.D401N	ENST00000234420	NM_000179.2	401	Gat/Aat																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730828	40730835	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCGGTC	CAGCGGTC	-			P-0020220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	54	879	0	ENST00000373198.4:c.3700_3707del	p.Asp1234ProfsTer22	p.D1234Pfs*22	ENST00000373198	NM_133170.3	1234	GACCGCTGc/c																																																																														
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	363	971	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	366	828	3	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533676	63533676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1278	81	648	0	ENST00000307078.5:c.1478C>T	p.Ser493Leu	p.S493L	ENST00000307078	NM_004655.3	493	tCg/tTg																																																																														
RB1	0	MSKCC	GRCh37	13	48942670	48942671	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	34	488	0	ENST00000267163.4:c.1060_1061del	p.Gln354GlufsTer7	p.Q354Efs*7	ENST00000267163	NM_000321.2	353	ACa/a																																																																														
NCOR1	0	MSKCC	GRCh37	17	16041455	16041488	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCAAACCATGTCTTACCTTCCTCTCCAAGTATG	TGCAAACCATGTCTTACCTTCCTCTCCAAGTATG	-			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	89	445	0	ENST00000268712.3:c.1391_1407+17del		p.X464_splice	ENST00000268712	NM_006311.3	464																																																																															
RARA	0	MSKCC	GRCh37	17	38506052	38506052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	47	703	2	ENST00000254066.5:c.344G>T	p.Ser115Ile	p.S115I	ENST00000254066	NM_000964.3	115	aGc/aTc																																																																														
TP63	0	MSKCC	GRCh37	3	189607161	189607161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	111	977	1	ENST00000264731.3:c.1540G>A	p.Gly514Arg	p.G514R	ENST00000264731	NM_003722.4	514	Gga/Aga																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41748273	41748273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	403	915	0	ENST00000226382.2:c.496G>A	p.Ala166Thr	p.A166T	ENST00000226382	NM_003924.3	166	Gcg/Acg																																																																														
PREX2	0	MSKCC	GRCh37	8	69031684	69031684	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020223-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	68	719	1	ENST00000288368.4:c.3439A>T	p.Ser1147Cys	p.S1147C	ENST00000288368	NM_024870.2	1147	Agt/Tgt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18641388	18641389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	49	323	0	ENST00000266497.5:c.2393dup	p.Asn798LysfsTer5	p.N798Kfs*5	ENST00000266497		796	cta/ctAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27102192	27102193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	138	574	0	ENST00000324856.7:c.5119dup	p.Ser1707LysfsTer20	p.S1707Kfs*20	ENST00000324856	NM_006015.4	1706	-/A																																																																														
ESR1	0	MSKCC	GRCh37	6	152265643	152265644	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GT			P-0020225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	82	449	0	ENST00000206249.3:c.1096+1_1096+2dup		p.G366fs	ENST00000206249	NM_000125.3	366	ggc/gGTgc																																																																														
TP53	0	MSKCC	GRCh37	17	7579416	7579416	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	224	920	0	ENST00000269305.4:c.271del	p.Trp91GlyfsTer32	p.W91Gfs*32	ENST00000269305	NM_001126112.2	91	Tgg/gg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	244	709	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	171	723	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	231	592	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	86	417	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	51	545	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
TSC1	0	MSKCC	GRCh37	9	135772901	135772902	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	96	928	0	ENST00000298552.3:c.2721dup	p.Arg908ThrfsTer42	p.R908Tfs*42	ENST00000298552	NM_001162426.1	907	-/A																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	195	972	8	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178937410	178937410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	16	198	0	ENST00000263967.3:c.1798G>A	p.Glu600Lys	p.E600K	ENST00000263967	NM_006218.2	600	Gaa/Aaa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993237	72993237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1150	85	1163	1	ENST00000268489.5:c.808G>A	p.Asp270Asn	p.D270N	ENST00000268489	NM_006885.3	270	Gat/Aat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	161	677	1	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	180	630	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	191	772	4	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	30	555	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	171	880	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714462	40714462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	105	677	1	ENST00000373198.4:c.3935C>T	p.Ser1312Phe	p.S1312F	ENST00000373198	NM_133170.3	1312	tCc/tTc																																																																														
TSC1	0	MSKCC	GRCh37	9	135787845	135787845	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	90	541	0	ENST00000298552.3:c.738-1G>A		p.X246_splice	ENST00000298552	NM_001162426.1	246																																																																															
GRIN2A	0	MSKCC	GRCh37	16	9858195	9858195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	44	762	0	ENST00000330684.3:c.3206C>T	p.Thr1069Met	p.T1069M	ENST00000330684	NM_001134407.1	1069	aCg/aTg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214866	36214866	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	88	1197	9	ENST00000222270.7:c.3296del	p.Gly1099AlafsTer83	p.G1099Afs*83	ENST00000222270	NM_014727.1	1098	Ggg/gg																																																																														
JAK1	0	MSKCC	GRCh37	1	65335134	65335134	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	45	689	1	ENST00000342505.4:c.507C>A	p.Cys169Ter	p.C169*	ENST00000342505	NM_002227.2	169	tgC/tgA																																																																														
FUBP1	0	MSKCC	GRCh37	1	78429280	78429280	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	44	816	0	ENST00000370768.2:c.1162del	p.Thr388LeufsTer3	p.T388Lfs*3	ENST00000370768	NM_003902.3	388	Act/ct																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120464911	120464911	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115013051		P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	43	673	1	ENST00000256646.2:c.5161G>A	p.Ala1721Thr	p.A1721T	ENST00000256646	NM_024408.3	1721	Gca/Aca																																																																														
CCND1	0	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	248	1055	0	ENST00000227507.2:c.859C>A	p.Pro287Thr	p.P287T	ENST00000227507	NM_053056.2	287	Ccc/Acc																																																																														
SESN3	0	MSKCC	GRCh37	11	94908662	94908662	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	115	869	0	ENST00000536441.1:c.1392del	p.Val465PhefsTer7	p.V465Ffs*7	ENST00000536441	NM_144665.3	464	aaA/aa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343475	118343475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	43	596	0	ENST00000534358.1:c.1601C>T	p.Ser534Leu	p.S534L	ENST00000534358	NM_005933.3	534	tCg/tTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343508	118343508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	42	604	0	ENST00000534358.1:c.1634A>G	p.Lys545Arg	p.K545R	ENST00000534358	NM_005933.3	545	aAa/aGa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49415639	49415639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	74	516	0	ENST00000301067.7:c.16538A>G	p.Gln5513Arg	p.Q5513R	ENST00000301067	NM_003482.3	5513	cAg/cGg																																																																														
TBX3	0	MSKCC	GRCh37	12	115117348	115117348	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	147	637	2	ENST00000257566.3:c.826A>G	p.Thr276Ala	p.T276A	ENST00000257566	NM_016569.3	276	Act/Gct																																																																														
LATS2	0	MSKCC	GRCh37	13	21562925	21562925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	68	922	0	ENST00000382592.4:c.994G>T	p.Gly332Cys	p.G332C	ENST00000382592	NM_014572.2	332	Ggc/Tgc																																																																														
LATS2	0	MSKCC	GRCh37	13	21619905	21619905	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	174	814	0	ENST00000382592.4:c.261del	p.Phe87LeufsTer13	p.F87Lfs*13	ENST00000382592	NM_014572.2	87	ttT/tt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67477067	67477067	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	152	628	0	ENST00000327367.4:c.874A>G	p.Arg292Gly	p.R292G	ENST00000327367	NM_005902.3	292	Aga/Gga																																																																														
SLX4	0	MSKCC	GRCh37	16	3658595	3658595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	282	1093	0	ENST00000294008.3:c.371G>T	p.Arg124Met	p.R124M	ENST00000294008	NM_032444.2	124	aGg/aTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778275	3778275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	49	781	2	ENST00000262367.5:c.6773G>A	p.Gly2258Asp	p.G2258D	ENST00000262367	NM_004380.2	2258	gGc/gAc																																																																														
NUP93	0	MSKCC	GRCh37	16	56852589	56852589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	108	876	0	ENST00000308159.5:c.503G>A	p.Ser168Asn	p.S168N	ENST00000308159	NM_014669.4	168	aGt/aAt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350533	89350533	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	99	1028	0	ENST00000301030.4:c.2417del	p.Lys806ArgfsTer57	p.K806Rfs*57	ENST00000301030	NM_001256183.1	806	aAg/ag																																																																														
SOX9	0	MSKCC	GRCh37	17	70119769	70119769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	48	907	0	ENST00000245479.2:c.774del	p.Leu259CysfsTer20	p.L259Cfs*20	ENST00000245479	NM_000346.3	257	cgC/cg																																																																														
YES1	0	MSKCC	GRCh37	18	724543	724543	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	45	282	1	ENST00000314574.4:c.1513A>T	p.Met505Leu	p.M505L	ENST00000314574	NM_005433.3	505	Atg/Ttg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223134	5223134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	72	1113	1	ENST00000357368.4:c.2669A>G	p.Tyr890Cys	p.Y890C	ENST00000357368	NM_002850.3	890	tAc/tGc																																																																														
FLT4	0	MSKCC	GRCh37	5	180052918	180052918	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	256	1153	0	ENST00000261937.6:c.1372T>A	p.Trp458Arg	p.W458R	ENST00000261937	NM_182925.4	458	Tgg/Agg																																																																														
AGO2	0	MSKCC	GRCh37	8	141566035	141566035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	72	729	0	ENST00000220592.5:c.1229G>T	p.Gly410Val	p.G410V	ENST00000220592	NM_012154.3	410	gGg/gTg																																																																														
AGO2	0	MSKCC	GRCh37	8	141567244	141567244	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	187	975	1	ENST00000220592.5:c.970del	p.His324ThrfsTer33	p.H324Tfs*33	ENST00000220592	NM_012154.3	324	Cac/ac																																																																														
TSC1	7248	MSKCC	GRCh37	9	135785984	135785984	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	76	814	1	ENST00000298552.3:c.1237del	p.Gln413ArgfsTer27	p.Q413Rfs*27	ENST00000298552	NM_001162426.1	413	Cag/ag																																																																														
ATRX	0	MSKCC	GRCh37	X	76937492	76937492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	76	861	1	ENST00000373344.5:c.3256G>T	p.Ala1086Ser	p.A1086S	ENST00000373344	NM_000489.3	1086	Gca/Tca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0020229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	674	1221	1	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
ATRX	0	MSKCC	GRCh37	X	76845391	76845391	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	190	653	0	ENST00000373344.5:c.6130C>G	p.Leu2044Val	p.L2044V	ENST00000373344	NM_000489.3	2044	Ctc/Gtc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	78	493	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
ARID2	0	MSKCC	GRCh37	12	46245332	46245333	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	181	737	0	ENST00000334344.6:c.3428_3429delTG	p.Val1143AlafsTer16	p.V1143Afs*16	ENST00000334344	NM_152641.2	1142	acTGtg/actg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81990368	81990368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	154	923	0	ENST00000359376.3:c.3639G>T	p.Gln1213His	p.Q1213H	ENST00000359376	NM_002661.3	1213	caG/caT																																																																														
BRIP1	0	MSKCC	GRCh37	17	59876545	59876545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	131	805	6	ENST00000259008.2:c.1256G>A	p.Arg419Gln	p.R419Q	ENST00000259008	NM_032043.2	419	cGg/cAg																																																																														
STK11	0	MSKCC	GRCh37	19	1207068	1207070	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	278	1084	0	ENST00000326873.7:c.156_158del	p.Asp53del	p.D53del	ENST00000326873	NM_000455.4	52	ggGGAc/ggc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271648	15271648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	86	1488	0	ENST00000263388.2:c.6791C>T	p.Ser2264Leu	p.S2264L	ENST00000263388	NM_000435.2	2264	tCa/tTa																																																																														
SOS1	0	MSKCC	GRCh37	2	39250268	39250268	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	275	1390	0	ENST00000402219.2:c.1301G>T	p.Gly434Val	p.G434V	ENST00000402219	NM_005633.3	434	gGa/gTa																																																																														
GNAS	0	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	14	645	0	ENST00000371085.3:c.601C>G	p.Arg201Gly	p.R201G	ENST00000371085	NM_000516.4	201	Cgt/Ggt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521428	8521428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	202	929	0	ENST00000356435.5:c.810G>T	p.Met270Ile	p.M270I	ENST00000356435		270	atG/atT																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	125	1048	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	35	931	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	28	728	1	ENST00000342988.3:c.1088G>A	p.Cys363Tyr	p.C363Y	ENST00000342988	NM_005359.5	363	tGt/tAt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88423505	88423505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	78	868	1	ENST00000360948.2:c.2330C>T	p.Thr777Met	p.T777M	ENST00000360948	NM_001012338.2	777	aCg/aTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89711945	89711945	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	68	774	0	ENST00000371953.3:c.563A>G	p.Tyr188Cys	p.Y188C	ENST00000371953	NM_000314.4	188	tAt/tGt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911605	114911606	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGAAAGCGCGGCCATC			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	83	828	0	ENST00000543371.1:c.1126_1142dup	p.Asn381LysfsTer116	p.N381Kfs*116	ENST00000543371	NM_001198531.1	375	aaa/aAAGAAAGCGCGGCCATCaa																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867058	45867058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	78	741	2	ENST00000391945.4:c.1061C>T	p.Pro354Leu	p.P354L	ENST00000391945	NM_000400.3	354	cCg/cTg																																																																														
APC	0	MSKCC	GRCh37	5	112173325	112173325	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	23	483	0	ENST00000257430.4:c.2034delT	p.Ser678ArgfsTer40	p.S678Rfs*40	ENST00000257430	NM_000038.5	678	agT/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7574024	7574024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	146	1106	3	ENST00000269305.4:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000269305	NM_001126112.2	335	Cgt/Tgt																																																																														
PARP1	0	MSKCC	GRCh37	1	226566899	226566900	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0020233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	191	957	0	ENST00000366794.5:c.1688_1689del	p.Val563GlufsTer35	p.V563Efs*35	ENST00000366794	NM_001618.3	563	gTT/g																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	78	778	2	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	67	986	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	93	723	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	105	978	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	53	1294	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266063	41266577	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	GGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTT	GGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTT	-			P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	49	550	0	ENST00000349496.5:c.65_379del		p.X22_splice	ENST00000349496	NM_001904.3	22	gcGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTg/gcg																																																																														
KDR	0	MSKCC	GRCh37	4	55980304	55980304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	66	877	2	ENST00000263923.4:c.787C>A	p.Pro263Thr	p.P263T	ENST00000263923	NM_002253.2	263	Cct/Act																																																																														
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0020235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	520	712	1	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
AURKB	0	MSKCC	GRCh37	17	8113519	8113519	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	732	1071	0	ENST00000585124.1:c.24C>A	p.Tyr8Ter	p.Y8*	ENST00000585124	NM_004217.3	8	taC/taA																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	79	956	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
ARID2	0	MSKCC	GRCh37	12	46123837	46123837	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	33	447	0	ENST00000334344.6:c.103A>T	p.Lys35Ter	p.K35*	ENST00000334344	NM_152641.2	35	Aaa/Taa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481806	56481806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	142	941	0	ENST00000267101.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000267101	NM_001982.3	245	gCc/gTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0020238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	52	1296	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
BAP1	0	MSKCC	GRCh37	3	52443599	52443601	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0020238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	166	864	0	ENST00000460680.1:c.91_93del	p.Glu31del	p.E31del	ENST00000460680	NM_004656.3	31	GAG/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	216	464	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	492	742	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
STAG2	0	MSKCC	GRCh37	X	123182858	123182858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	222	395	0	ENST00000218089.9:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000218089	NM_001042749.1	275	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107180	27107180	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	343	600	0	ENST00000324856.7:c.6791C>G	p.Ser2264Ter	p.S2264*	ENST00000324856	NM_006015.4	2264	tCa/tGa																																																																														
ATR	0	MSKCC	GRCh37	3	142242872	142242872	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	332	629	0	ENST00000350721.4:c.4115C>G	p.Ser1372Ter	p.S1372*	ENST00000350721	NM_001184.3	1372	tCa/tGa																																																																														
JAK1	0	MSKCC	GRCh37	1	65332658	65332658	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	196	430	1	ENST00000342505.4:c.881C>A	p.Ser294Ter	p.S294*	ENST00000342505	NM_002227.2	294	tCa/tAa																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64136069	64136069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	133	655	0	ENST00000334205.4:c.1330C>A	p.Arg444Ser	p.R444S	ENST00000334205	NM_003942.2	444	Cgc/Agc																																																																														
SETD8	0	MSKCC	GRCh37	12	123880929	123880929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	79	429	0	ENST00000330479.4:c.547G>A	p.Asp183Asn	p.D183N	ENST00000330479	NM_020382.3	183	Gat/Aat																																																																														
GPS2	0	MSKCC	GRCh37	17	7216566	7216566	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	282	512	0	ENST00000380728.2:c.769del	p.Glu257AsnfsTer88	p.E257Nfs*88	ENST00000380728		257	Gaa/aa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532583	63532596	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCCCCCCACAGA	TGCCCCCCCACAGA	-			P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	148	735	2	ENST00000307078.5:c.1983_1996del	p.His661GlnfsTer41	p.H661Qfs*41	ENST00000307078	NM_004655.3	661	caTCTGTGGGGGGGCAac/caac																																																																														
MLH1	0	MSKCC	GRCh37	3	37053343	37053343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	212	499	0	ENST00000231790.2:c.578C>T	p.Ser193Leu	p.S193L	ENST00000231790	NM_000249.3	193	tCa/tTa																																																																														
ATR	0	MSKCC	GRCh37	3	142222289	142222289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	254	392	0	ENST00000350721.4:c.5203C>G	p.His1735Asp	p.H1735D	ENST00000350721	NM_001184.3	1735	Cat/Gat																																																																														
ATR	0	MSKCC	GRCh37	3	142281398	142281415	+	inframe_deletion	In_Frame_Del	DEL	TTCTACAAGGTGTTTTAA	TTCTACAAGGTGTTTTAA	-			P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1280	161	667	0	ENST00000350721.4:c.829_846del	p.Leu277_Glu282del	p.L277_E282del	ENST00000350721	NM_001184.3	277	TTAAAACACCTTGTAGAA/-																																																																														
KDM6A	0	MSKCC	GRCh37	X	44945173	44945227	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTTTGTTGTTCCTGAAGGTTACTGGGGTGTTCTGAATGACTTCTGTGAAAAGTA	GGTTTGTTGTTCCTGAAGGTTACTGGGGTGTTCTGAATGACTTCTGTGAAAAGTA	-			P-0020240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	130	691	0	ENST00000377967.4:c.3502_3548+8del		p.X1168_splice	ENST00000377967	NM_021140.2	1168																																																																															
MAP3K1	0	MSKCC	GRCh37	5	56179385	56179386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	73	359	0	ENST00000399503.3:c.3702dup	p.Gln1235ThrfsTer4	p.Q1235Tfs*4	ENST00000399503	NM_005921.1	1233	gca/gcAa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56179459	56179460	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0020241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	103	503	0	ENST00000399503.3:c.3773dup	p.Tyr1258Ter	p.Y1258*	ENST00000399503	NM_005921.1	1258	tat/tAat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	336	564	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	1028	1074	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
DICER1	0	MSKCC	GRCh37	14	95557630	95557630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	533	718	0	ENST00000343455.3:c.5437G>A	p.Glu1813Lys	p.E1813K	ENST00000343455	NM_177438.2	1813	Gag/Aag																																																																														
RHOA	0	MSKCC	GRCh37	3	49413009	49413009	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552758		P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	657	832	0	ENST00000418115.1:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000418115	NM_001664.2	5	cGg/cAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434181	49434181	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	803	1116	0	ENST00000301067.7:c.7372C>T	p.Gln2458Ter	p.Q2458*	ENST00000301067	NM_003482.3	2458	Cag/Tag																																																																														
FOXO1	0	MSKCC	GRCh37	13	41240208	41240208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	21	153	1	ENST00000379561.5:c.142G>A	p.Ala48Thr	p.A48T	ENST00000379561	NM_002015.3	48	Gcg/Acg																																																																														
RB1	0	MSKCC	GRCh37	13	48881523	48881523	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	309	415	0	ENST00000267163.4:c.245C>A	p.Ser82Ter	p.S82*	ENST00000267163	NM_000321.2	82	tCa/tAa																																																																														
RB1	0	MSKCC	GRCh37	13	48934220	48934220	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	363	718	0	ENST00000267163.4:c.678del	p.Phe226LeufsTer38	p.F226Lfs*38	ENST00000267163	NM_000321.2	225	taT/ta																																																																														
MAPK3	0	MSKCC	GRCh37	16	30128594	30128594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	392	532	2	ENST00000263025.4:c.788C>T	p.Ser263Phe	p.S263F	ENST00000263025	NM_002746.2	263	tCc/tTc																																																																														
CDH1	0	MSKCC	GRCh37	16	68856099	68856099	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	592	833	0	ENST00000261769.5:c.1908del	p.Asn637ThrfsTer16	p.N637Tfs*16	ENST00000261769	NM_004360.3	636	gCc/gc																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774737	73774737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	251	269	1	ENST00000254810.4:c.350G>A	p.Arg117Lys	p.R117K	ENST00000254810	NM_005324.3	117	aGa/aAa																																																																														
JAK3	0	MSKCC	GRCh37	19	17942086	17942086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	297	1001	0	ENST00000458235.1:c.2929G>C	p.Asp977His	p.D977H	ENST00000458235	NM_000215.3	977	Gac/Cac																																																																														
ERBB4	0	MSKCC	GRCh37	2	212483985	212483985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	178	594	0	ENST00000342788.4:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000342788	NM_005235.2	740	Gaa/Aaa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52623143	52623143	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	326	802	0	ENST00000394830.3:c.2908G>C	p.Glu970Gln	p.E970Q	ENST00000394830	NM_018313.4	970	Gag/Cag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916699	178916699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	261	499	1	ENST00000263967.3:c.86G>A	p.Gly29Glu	p.G29E	ENST00000263967	NM_006218.2	29	gGa/gAa																																																																														
FAT1	0	MSKCC	GRCh37	4	187524621	187524621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	298	824	1	ENST00000441802.2:c.11059G>A	p.Glu3687Lys	p.E3687K	ENST00000441802	NM_005245.3	3687	Gaa/Aaa																																																																														
FAT1	0	MSKCC	GRCh37	4	187540784	187540784	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	290	458	0	ENST00000441802.2:c.6956C>G	p.Ser2319Ter	p.S2319*	ENST00000441802	NM_005245.3	2319	tCa/tGa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38959337	38959337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	215	708	1	ENST00000357387.3:c.2138C>T	p.Ala713Val	p.A713V	ENST00000357387	NM_152756.3	713	gCt/gTt																																																																														
MDC1	0	MSKCC	GRCh37	6	30679702	30679702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	269	903	1	ENST00000376406.3:c.2017G>A	p.Glu673Lys	p.E673K	ENST00000376406	NM_014641.2	673	Gag/Aag																																																																														
DAXX	0	MSKCC	GRCh37	6	33287851	33287851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	330	980	0	ENST00000374542.5:c.1402G>A	p.Glu468Lys	p.E468K	ENST00000374542	NM_001141970.1	468	Gaa/Aaa																																																																														
TEK	0	MSKCC	GRCh37	9	27206744	27206744	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	230	701	1	ENST00000380036.4:c.2529C>G	p.Ile843Met	p.I843M	ENST00000380036	NM_000459.3	843	atC/atG																																																																														
RRAS2	0	MSKCC	GRCh37	11	14316390	14316390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	51	655	1	ENST00000256196.4:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000256196		72	cAa/cTa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952141	178952142	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0020244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	16	292	0	ENST00000263967.3:c.3196_3197delinsTT	p.Ala1066Leu	p.A1066L	ENST00000263967	NM_006218.2	1066	GCa/TTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	381	949	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	253	894	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486247	8486247	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139171396		P-0020245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	77	470	0	ENST00000356435.5:c.2570G>A	p.Arg857His	p.R857H	ENST00000356435		857	cGt/cAt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520761	176520761	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141530067		P-0020245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	118	645	3	ENST00000292408.4:c.1504G>A	p.Val502Ile	p.V502I	ENST00000292408	NM_213647.1	502	Gtc/Atc																																																																														
MSH6	0	MSKCC	GRCh37	2	48026606	48026606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	26	525	1	ENST00000234420.5:c.1484G>A	p.Arg495Gln	p.R495Q	ENST00000234420	NM_000179.2	495	cGa/cAa																																																																														
APC	0	MSKCC	GRCh37	5	112175608	112175608	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	182	450	0	ENST00000257430.4:c.4317del	p.Pro1440HisfsTer33	p.P1440Hfs*33	ENST00000257430	NM_000038.5	1439	ccT/cc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0020249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	297	759	5	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118342518	118342518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	19	290	0	ENST00000534358.1:c.644C>T	p.Ser215Phe	p.S215F	ENST00000534358	NM_005933.3	215	tCt/tTt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81971387	81971387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	64	551	0	ENST00000359376.3:c.3077C>A	p.Ala1026Glu	p.A1026E	ENST00000359376	NM_002661.3	1026	gCa/gAa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881046	37881046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23137	1959	888	0	ENST00000269571.5:c.2375C>T	p.Ser792Phe	p.S792F	ENST00000269571		792	tCc/tTc																																																																														
PMS1	0	MSKCC	GRCh37	2	190670429	190670430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGA			P-0020249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	90	629	0	ENST00000441310.2:c.369_372dup	p.Gly125ArgfsTer27	p.G125Rfs*27	ENST00000441310	NM_000534.4	123	tta/tTAGAta																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259608	89259608	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	48	426	0	ENST00000336596.2:c.752T>C	p.Leu251Pro	p.L251P	ENST00000336596	NM_005233.5	251	cTt/cCt																																																																														
INHBA	0	MSKCC	GRCh37	7	41739592	41739592	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	43	504	0	ENST00000242208.4:c.381del	p.Glu128SerfsTer32	p.E128Sfs*32	ENST00000242208	NM_002192.2	127	gcC/gc																																																																														
HGF	0	MSKCC	GRCh37	7	81381559	81381559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	103	352	0	ENST00000222390.5:c.502C>T	p.Arg168Trp	p.R168W	ENST00000222390	NM_000601.4	168	Cgg/Tgg																																																																														
PREX2	0	MSKCC	GRCh37	8	68939553	68939553	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	109	438	0	ENST00000288368.4:c.538T>G	p.Leu180Val	p.L180V	ENST00000288368	NM_024870.2	180	Ttg/Gtg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741394	145741394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1398	181	1094	0	ENST00000428558.2:c.1109G>A	p.Arg370His	p.R370H	ENST00000428558	NM_004260.3	370	cGt/cAt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8340393	8340393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	62	597	0	ENST00000356435.5:c.5203C>A	p.His1735Asn	p.H1735N	ENST00000356435		1735	Cac/Aac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636771	8636771	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	44	679	0	ENST00000356435.5:c.138A>T	p.Gln46His	p.Q46H	ENST00000356435		46	caA/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0020251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	384	1015	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0020251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	248	592	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	290	899	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584709	48584709	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	204	529	0	ENST00000342988.3:c.788-1G>C		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178947190	178947190	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	119	353	0	ENST00000263967.3:c.2626A>C	p.Thr876Pro	p.T876P	ENST00000263967	NM_006218.2	876	Aca/Cca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	409	959	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0020259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	13	589	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056575	26056575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75040909		P-0020259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	23	379	0	ENST00000343677.2:c.82G>A	p.Ala28Thr	p.A28T	ENST00000343677	NM_005319.3	28	Gct/Act																																																																														
IRS2	0	MSKCC	GRCh37	13	110434974	110434974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	71	825	0	ENST00000375856.3:c.3427G>A	p.Gly1143Ser	p.G1143S	ENST00000375856	NM_003749.2	1143	Ggc/Agc																																																																														
RBM10	0	MSKCC	GRCh37	X	47041205	47041205	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	99	1437	0	ENST00000329236.7:c.1400del	p.Pro467LeufsTer159	p.P467Lfs*159	ENST00000329236	NM_001204466.1	467	Cct/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	14	607	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0020261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	119	763	2	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0020261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	26	571	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	41	542	1	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
PTEN	0	MSKCC	GRCh37	10	89653842	89653842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	50	717	0	ENST00000371953.3:c.140G>A	p.Arg47Lys	p.R47K	ENST00000371953	NM_000314.4	47	aGg/aAg																																																																														
BCL2L1	0	MSKCC	GRCh37	20	30310017	30310017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	60	676	1	ENST00000307677.4:c.5C>A	p.Ser2Tyr	p.S2Y	ENST00000307677	NM_138578.1	2	tCt/tAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	535	952	17	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106481	27106482	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	356	814	13	ENST00000324856.7:c.6093dup	p.Glu2032Ter	p.E2032*	ENST00000324856	NM_006015.4	2031	tat/taTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421027	49421027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	230	632	4	ENST00000301067.7:c.14722G>A	p.Ala4908Thr	p.A4908T	ENST00000301067	NM_003482.3	4908	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	60	1031	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0020264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	36	635	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	66	1056	1	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056425	26056427	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs774779034		P-0020265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	39	476	0	ENST00000343677.2:c.230_232del	p.Asn77del	p.N77del	ENST00000343677	NM_005319.3	77	aACAgc/agc																																																																														
GATA1	0	MSKCC	GRCh37	X	48651642	48651642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	238	1044	0	ENST00000376670.3:c.808C>T	p.Arg270Trp	p.R270W	ENST00000376670	NM_002049.3	270	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099955	27099970	+	frameshift_variant	Frame_Shift_Del	DEL	CTATCCCTATGGAGGT	CTATCCCTATGGAGGT	-			P-0020265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	168	899	0	ENST00000324856.7:c.3835_3850del	p.Tyr1279LeufsTer5	p.Y1279Lfs*5	ENST00000324856	NM_006015.4	1278	caCTATCCCTATGGAGGT/ca																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18266703	18266703	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	165	876	0	ENST00000222254.8:c.14A>T	p.Glu5Val	p.E5V	ENST00000222254	NM_005027.3	5	gAg/gTg																																																																														
REL	0	MSKCC	GRCh37	2	61118817	61118818	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0020265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	52	302	1	ENST00000295025.8:c.11-1_11delinsTT		p.X4_splice	ENST00000295025	NM_002908.2	4																																																																															
RTEL1	0	MSKCC	GRCh37	20	62292678	62292678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1589	193	874	0	ENST00000508582.2:c.130A>G	p.Thr44Ala	p.T44A	ENST00000508582		44	Acg/Gcg																																																																														
MET	0	MSKCC	GRCh37	7	116380973	116380973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	142	924	1	ENST00000397752.3:c.1595C>T	p.Ala532Val	p.A532V	ENST00000397752	NM_000245.2	532	gCc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0020266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	18	350	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0020266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	40	489	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
CBFB	0	MSKCC	GRCh37	16	67063320	67063320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	17	353	0	ENST00000412916.2:c.10G>T	p.Val4Phe	p.V4F	ENST00000412916		4	Gtc/Ttc																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0020266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	51	602	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
PPARG	0	MSKCC	GRCh37	3	12447410	12447410	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	43	789	0	ENST00000287820.6:c.649G>C	p.Glu217Gln	p.E217Q	ENST00000287820	NM_015869.4	217	Gag/Cag																																																																														
GATA3	0	MSKCC	GRCh37	10	8115971	8115972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	165	522	1	ENST00000346208.3:c.1318dup	p.Thr440AsnfsTer67	p.T440Nfs*67	ENST00000346208		439	-/A																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10273879	10273880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	152	1202	0	ENST00000330684.3:c.389dup	p.Ala131ArgfsTer7	p.A131Rfs*7	ENST00000330684	NM_001134407.1	130	ggc/ggGc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48586265	48586265	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	127	946	0	ENST00000342988.3:c.934C>A	p.Pro312Thr	p.P312T	ENST00000342988	NM_005359.5	312	Cct/Act																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984835	11984835	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	99	722	0	ENST00000353533.5:c.382del	p.Met128TrpfsTer24	p.M128Wfs*24	ENST00000353533	NM_003010.3	127	atA/at																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029404	16029408	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTT	TTCTT	-			P-0020269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	92	1112	0	ENST00000268712.3:c.1622_1626del	p.Lys541ArgfsTer20	p.K541Rfs*20	ENST00000268712	NM_006311.3	541	aAAGAA/a																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020273-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			710	68	991	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7984460	7984460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020273-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	36	860	0	ENST00000319144.4:c.398G>C	p.Arg133Thr	p.R133T	ENST00000319144	NM_001139.2	133	aGa/aCa																																																																														
SETD2	0	MSKCC	GRCh37	3	47158113	47158113	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0020273-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	31	818	0	ENST00000409792.3:c.4586G>T	p.Cys1529Phe	p.C1529F	ENST00000409792	NM_014159.6	1529	tGt/tTt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099977	157099977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	96	310	1	ENST00000346085.5:c.914G>A	p.Gly305Asp	p.G305D	ENST00000346085	NM_020732.3	305	gGc/gAc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244179	153244179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	122	758	1	ENST00000281708.4:c.1978C>G	p.Leu660Val	p.L660V	ENST00000281708	NM_033632.3	660	Cta/Gta																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105512	27105512	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0020294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	176	517	0	ENST00000324856.7:c.5125-2A>C		p.X1709_splice	ENST00000324856	NM_006015.4	1709																																																																															
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	146	443	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	346	893	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
AMER1	0	MSKCC	GRCh37	X	63411366	63411366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	259	418	1	ENST00000330258.3:c.1801C>T	p.Arg601Ter	p.R601*	ENST00000330258	NM_152424.3	601	Cga/Tga																																																																														
SOX9	0	MSKCC	GRCh37	17	70120351	70120351	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	399	1032	0	ENST00000245479.2:c.1353C>G	p.Tyr451Ter	p.Y451*	ENST00000245479	NM_000346.3	451	taC/taG																																																																														
TAP1	0	MSKCC	GRCh37	6	32815757	32815757	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	256	763	0	ENST00000354258.4:c.1859del	p.Gly620AspfsTer44	p.G620Dfs*44	ENST00000354258	NM_000593.5	620	gGa/ga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482606	56482606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	342	823	0	ENST00000267101.3:c.1063A>G	p.Thr355Ala	p.T355A	ENST00000267101	NM_001982.3	355	Acc/Gcc																																																																														
TP53	0	MSKCC	GRCh37	17	7572962	7572962	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	281	718	2	ENST00000269305.4:c.1147del	p.Leu383SerfsTer39	p.L383Sfs*39	ENST00000269305	NM_001126112.2	383	Ctc/tc																																																																														
CD79A	0	MSKCC	GRCh37	19	42383691	42383691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	260	794	2	ENST00000221972.3:c.466G>A	p.Ala156Thr	p.A156T	ENST00000221972	NM_021601.3	156	Gcg/Acg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198257185	198257694	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTAAAATAATTGAACGGTTACATTATTTCAATTTTTAAGAACATACATAACCTTAACAAAATTAAGAAAACATAAAGATATGATTCAAAATTATTTCCCTTGGGGAGTTGGGGGGGGGGGAACCTACTAATTACACTGCTCTTAAGCTGCAATGGAAGAGACAAAACTCACTCCCCTGTCACCACACAATTGTTCTACCATATGGCACAATATACCCTAATGATAATCAGGAAAAGTAACTTAATTCAATACACTACTTTTCTTGCTAAGTAATCTTTTAAAAATCTTTAACTTACAGGCAGTGGGGGGAAAGGGGAGGGAGAGCATTAGGACAAATACCTAATGCATGCAGGGCTTAAAACCTAGATGACAGGTTGATAGGTGCAGCAAACCACCATGGCACATATATACCTATGTAACAAACCTGCACGTTCAGCACAAGTATCCCAGAACTTAAAGTATTATTTAAAAAAAAAAAATCACCGATTAAAAAAAAAATCTTTAACTTA	CCTAAAATAATTGAACGGTTACATTATTTCAATTTTTAAGAACATACATAACCTTAACAAAATTAAGAAAACATAAAGATATGATTCAAAATTATTTCCCTTGGGGAGTTGGGGGGGGGGGAACCTACTAATTACACTGCTCTTAAGCTGCAATGGAAGAGACAAAACTCACTCCCCTGTCACCACACAATTGTTCTACCATATGGCACAATATACCCTAATGATAATCAGGAAAAGTAACTTAATTCAATACACTACTTTTCTTGCTAAGTAATCTTTTAAAAATCTTTAACTTACAGGCAGTGGGGGGAAAGGGGAGGGAGAGCATTAGGACAAATACCTAATGCATGCAGGGCTTAAAACCTAGATGACAGGTTGATAGGTGCAGCAAACCACCATGGCACATATATACCTATGTAACAAACCTGCACGTTCAGCACAAGTATCCCAGAACTTAAAGTATTATTTAAAAAAAAAAAATCACCGATTAAAAAAAAAATCTTTAACTTA	-			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	226	573	0	ENST00000335508.6:c.3756+2_3757del		p.X1252_splice	ENST00000335508	NM_012433.2	1252																																																																															
SF3B1	0	MSKCC	GRCh37	2	198262840	198263183	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTAATTTAAAAAATACACATATTAATTATTGTGACATTAAGAAAAGTTTTAAGGATAAATTTGCAAATTCAGTTCTAAAAACATGATTAACTCATTTTAAGCATTAAATAAAACTTACTACTCTTCAGAAAGGCTGAAGAGTTAGTCTTACAGGTTTAGTCCTAAAATTACATTGCCACCCCCATTACCATCCAAATTGAAATTTGACTGAAAATATTAATACTGGATAGCCTAATCTTTTACACTTATATTAGTGACATTAAGGAAATTTTGCTAATTGAATACAAAGTGGCCAAATTTGAAAATTGATACTGCTTATAAAAATGTGTGGGTAATCTGCTTA	CCTAATTTAAAAAATACACATATTAATTATTGTGACATTAAGAAAAGTTTTAAGGATAAATTTGCAAATTCAGTTCTAAAAACATGATTAACTCATTTTAAGCATTAAATAAAACTTACTACTCTTCAGAAAGGCTGAAGAGTTAGTCTTACAGGTTTAGTCCTAAAATTACATTGCCACCCCCATTACCATCCAAATTGAAATTTGACTGAAAATATTAATACTGGATAGCCTAATCTTTTACACTTATATTAGTGACATTAAGGAAATTTTGCTAATTGAATACAAAGTGGCCAAATTTGAAAATTGATACTGCTTATAAAAATGTGTGGGTAATCTGCTTA	-			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	240	393	0	ENST00000335508.6:c.3134+2_3135del		p.X1045_splice	ENST00000335508	NM_012433.2	1045																																																																															
SF3B1	0	MSKCC	GRCh37	2	198264890	198264974	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTATAATAAAACAAATAATGTTAAAATGTTACTATTTACATTAAACTATTTGGGGAAGAAGTAAGAATTTGATGCAAAAGTTTA	CCTATAATAAAACAAATAATGTTAAAATGTTACTATTTACATTAAACTATTTGGGGAAGAAGTAAGAATTTGATGCAAAAGTTTA	-			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	222	661	0	ENST00000335508.6:c.2901+2_2902del		p.X967_splice	ENST00000335508	NM_012433.2	967																																																																															
SF3B1	0	MSKCC	GRCh37	2	198265158	198265437	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTAAAAAATAAATTTAAAAAAAAGACATATTCATTTGGTTTATGACTGCACAGTTGAAATACACTAAGAGTCAACCTTTTCTAACCACCCAAACATCTGTTGCTGTTTTTTTACATCAAATCTTAAAACTTGAGGTAGAATAATATCGTTTGGTAACCCCCTGAGCATTTTAAAAATTACTTCAAATTCAATTGCATTCTAGAAAAATTTGCTTGACAACTAATATGCTTTTCTACAAATATTAAAGTTAGTAGCAATGTGCCATAATAGTTTTCATTA	CCTAAAAAATAAATTTAAAAAAAAGACATATTCATTTGGTTTATGACTGCACAGTTGAAATACACTAAGAGTCAACCTTTTCTAACCACCCAAACATCTGTTGCTGTTTTTTTACATCAAATCTTAAAACTTGAGGTAGAATAATATCGTTTGGTAACCCCCTGAGCATTTTAAAAATTACTTCAAATTCAATTGCATTCTAGAAAAATTTGCTTGACAACTAATATGCTTTTCTACAAATATTAAAGTTAGTAGCAATGTGCCATAATAGTTTTCATTA	-			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	273	405	0	ENST00000335508.6:c.2718+2_2719del		p.X906_splice	ENST00000335508	NM_012433.2	906																																																																															
SF3B1	0	MSKCC	GRCh37	2	198266248	198266463	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTAAAAGGTTAAGAAATAGTAATAATAAATCAACTGACCTGAAATGAAGAGAATACTCATTGCTGATTACGTGATTTTAAAAAATAAAATTTAAAAACAAATCAAACAGTATTCGTGTAACATACAGTTTTTTTTGTTGATTTTTAAAAACACTTTAAAATTCTGTTAGAACCATGAAACATATCCAGTTTACATTAACAAATCTGGAATAATT	ACCTAAAAGGTTAAGAAATAGTAATAATAAATCAACTGACCTGAAATGAAGAGAATACTCATTGCTGATTACGTGATTTTAAAAAATAAAATTTAAAAACAAATCAAACAGTATTCGTGTAACATACAGTTTTTTTTGTTGATTTTTAAAAACACTTTAAAATTCTGTTAGAACCATGAAACATATCCAGTTTACATTAACAAATCTGGAATAATT	-			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	280	457	0	ENST00000335508.6:c.2370+3_2372del		p.X790_splice	ENST00000335508	NM_012433.2	790																																																																															
SF3B1	0	MSKCC	GRCh37	2	198266612	198266707	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTATTTTTAAATAAAAAATATATGTACTTTAGTAATTTAGATTTATGTCGCCTTAACTTTAATGAAGATAAATCAAAAGGTAATTGGTGGATTTA	CCTATTTTTAAATAAAAAATATATGTACTTTAGTAATTTAGATTTATGTCGCCTTAACTTTAATGAAGATAAATCAAAAGGTAATTGGTGGATTTA	-			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	287	572	0	ENST00000335508.6:c.2223+2_2224del		p.X741_splice	ENST00000335508	NM_012433.2	741																																																																															
SF3B1	0	MSKCC	GRCh37	2	198266824	198266825	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	124	677	0	ENST00000335508.6:c.2107_2108del	p.Thr703HisfsTer11	p.T703Hfs*11	ENST00000335508	NM_012433.2	703	ACc/c																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245409	153245411	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	301	753	0	ENST00000281708.4:c.1780_1782del	p.Leu594del	p.L594del	ENST00000281708	NM_033632.3	594	CTT/-																																																																														
APC	0	MSKCC	GRCh37	5	112175294	112175295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCAGACTG			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	132	382	0	ENST00000257430.4:c.4004_4011dup	p.Gln1338AlafsTer80	p.Q1338Afs*80	ENST00000257430	NM_000038.5	1335	agc/aGCAGACTGgc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879522	151879522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	223	548	0	ENST00000262189.6:c.5423G>A	p.Ser1808Asn	p.S1808N	ENST00000262189	NM_170606.2	1808	aGt/aAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	403	794	1	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
STAG2	0	MSKCC	GRCh37	X	123217380	123217380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	352	755	0	ENST00000218089.9:c.3034C>T	p.Arg1012Ter	p.R1012*	ENST00000218089	NM_001042749.1	1012	Cga/Tga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927979	178927984	+	inframe_deletion	In_Frame_Del	DEL	CTGTCC	CTGTCC	-			P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	207	416	0	ENST00000263967.3:c.1257_1262del	p.His419_Pro421delinsGln	p.H419_P421delinsQ	ENST00000263967	NM_006218.2	419	caCTGTCCa/caa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11998891	11998891	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	184	459	0	ENST00000353533.5:c.394-1G>C		p.X132_splice	ENST00000353533	NM_003010.3	132																																																																															
EP300	0	MSKCC	GRCh37	22	41574348	41574348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	357	781	0	ENST00000263253.7:c.6633C>A	p.Phe2211Leu	p.F2211L	ENST00000263253	NM_001429.3	2211	ttC/ttA																																																																														
MET	0	MSKCC	GRCh37	7	116398565	116398565	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	354	805	0	ENST00000397752.3:c.2155G>C	p.Glu719Gln	p.E719Q	ENST00000397752	NM_000245.2	719	Gag/Cag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845551	151845551	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	386	764	2	ENST00000262189.6:c.13461C>A	p.Cys4487Ter	p.C4487*	ENST00000262189	NM_170606.2	4487	tgC/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	280	689	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0020302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	168	466	2	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
CYLD	0	MSKCC	GRCh37	16	50783886	50783886	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	259	813	0	ENST00000398568.2:c.277A>G	p.Asn93Asp	p.N93D	ENST00000398568	NM_001042412.1	93	Aat/Gat																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468517	89468517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	105	416	0	ENST00000336596.2:c.2051G>A	p.Arg684Gln	p.R684Q	ENST00000336596	NM_005233.5	684	cGa/cAa																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841241	15841241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	79	325	0	ENST00000307771.7:c.1325G>A	p.Arg442Gln	p.R442Q	ENST00000307771	NM_005089.3	442	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	200	432	2				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	352	834	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
JAK1	0	MSKCC	GRCh37	1	65305399	65305399	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	400	801	0	ENST00000342505.4:c.2729T>C	p.Leu910Pro	p.L910P	ENST00000342505	NM_002227.2	910	cTg/cCg																																																																														
GLI1	0	MSKCC	GRCh37	12	57861844	57861844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	361	756	2	ENST00000228682.2:c.1145A>G	p.His382Arg	p.H382R	ENST00000228682	NM_005269.2	382	cAt/cGt																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66774189	66774189	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	572	1294	0	ENST00000307102.5:c.665C>G	p.Ser222Cys	p.S222C	ENST00000307102	NM_002755.3	222	tCc/tGc																																																																														
STK11	0	MSKCC	GRCh37	19	1218460	1218461	+	missense_variant	Missense_Mutation	DNP	AG	AG	CC			P-0020304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	399	902	2	ENST00000326873.7:c.335_336delinsCC	p.Gln112Pro	p.Q112P	ENST00000326873	NM_000455.4	112	cAG/cCC																																																																														
PRKCI	0	MSKCC	GRCh37	3	170011253	170011253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	390	976	0	ENST00000295797.4:c.1374C>A	p.Ser458Arg	p.S458R	ENST00000295797	NM_002740.5	458	agC/agA																																																																														
ROS1	0	MSKCC	GRCh37	6	117709014	117709014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	142	809	4	ENST00000368508.3:c.1943C>A	p.Ser648Tyr	p.S648Y	ENST00000368508	NM_002944.2	648	tCt/tAt																																																																														
TSC1	0	MSKCC	GRCh37	9	135801045	135801045	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	315	672	1	ENST00000298552.3:c.292A>T	p.Arg98Ter	p.R98*	ENST00000298552	NM_001162426.1	98	Aga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	123	753	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029218	14029218	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41557814		P-0020306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	109	455	0	ENST00000311895.7:c.1429C>T	p.Arg477Trp	p.R477W	ENST00000311895	NM_005236.2	477	Cgg/Tgg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573651	48573651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	87	715	0	ENST00000342988.3:c.235G>T	p.Asp79Tyr	p.D79Y	ENST00000342988	NM_005359.5	79	Gat/Tat																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266093	41266258	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATT	CCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATT	-			P-0020306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	82	487	0	ENST00000349496.5:c.90_241+14del		p.X30_splice	ENST00000349496	NM_001904.3	30																																																																															
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	270	757	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	212	488	0	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	59	811	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	154	465	0				ENST00000310581	NM_198253.2																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	190	716	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	74	138	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	313	887	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727111	40727111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	282	779	2	ENST00000373198.4:c.3853G>A	p.Asp1285Asn	p.D1285N	ENST00000373198	NM_133170.3	1285	Gat/Aat																																																																														
ALK	0	MSKCC	GRCh37	2	29606652	29606652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	276	759	0	ENST00000389048.3:c.1228G>A	p.Gly410Arg	p.G410R	ENST00000389048	NM_004304.4	410	Gga/Aga																																																																														
MYCL1	0	MSKCC	GRCh37	1	40363463	40363463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	271	784	0	ENST00000397332.2:c.766G>A	p.Glu256Lys	p.E256K	ENST00000397332	NM_001033082.2	256	Gaa/Aaa																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	200	736	3	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	235	688	1	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
CTLA4	0	MSKCC	GRCh37	2	204735422	204735422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	235	433	0	ENST00000302823.3:c.223C>T	p.Arg75Trp	p.R75W	ENST00000302823	NM_005214.4	75	Cgg/Tgg																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134988	41134988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	126	385	0	ENST00000379561.5:c.640C>T	p.Arg214Cys	p.R214C	ENST00000379561	NM_002015.3	214	Cgt/Tgt																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915952	127915952	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	217	778	5	ENST00000373547.4:c.529C>T	p.Arg177Ter	p.R177*	ENST00000373547	NM_002721.4	177	Cga/Tga																																																																														
ERBB4	0	MSKCC	GRCh37	2	212288993	212288993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	174	859	0	ENST00000342788.4:c.2753G>A	p.Gly918Glu	p.G918E	ENST00000342788	NM_005235.2	918	gGa/gAa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198265591	198265591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	212	881	1	ENST00000335508.6:c.2566G>A	p.Asp856Asn	p.D856N	ENST00000335508	NM_012433.2	856	Gat/Aat																																																																														
ETV1	0	MSKCC	GRCh37	7	13971178	13971178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	203	483	0	ENST00000405192.2:c.751C>T	p.Pro251Ser	p.P251S	ENST00000405192	NM_001163147.1	251	Ccc/Tcc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9984919	9984919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	266	800	0	ENST00000330684.3:c.1046C>T	p.Ser349Phe	p.S349F	ENST00000330684	NM_001134407.1	349	tCc/tTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93979242	93979242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	152	627	3	ENST00000369303.4:c.1586G>A	p.Arg529Lys	p.R529K	ENST00000369303	NM_004440.3	529	aGa/aAa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217310	66217310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	114	316	0	ENST00000273854.3:c.2305G>A	p.Asp769Asn	p.D769N	ENST00000273854	NM_004439.5	769	Gat/Aat																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699196	117699196	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	144	534	0	ENST00000369458.3:c.445G>A	p.Ala149Thr	p.A149T	ENST00000369458	NM_024626.3	149	Gcc/Acc																																																																														
RIT1	0	MSKCC	GRCh37	1	155874163	155874163	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	333	902	0	ENST00000368323.3:c.368G>C	p.Arg123Pro	p.R123P	ENST00000368323	NM_006912.5	123	cGt/cCt																																																																														
AKT3	0	MSKCC	GRCh37	1	243858979	243858979	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	145	812	1	ENST00000263826.5:c.86T>C	p.Leu29Ser	p.L29S	ENST00000263826	NM_005465.4	29	tTg/tCg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720864	89720864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	139	436	0	ENST00000371953.3:c.1015C>T	p.Pro339Ser	p.P339S	ENST00000371953	NM_000314.4	339	Cca/Tca																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195348	102195348	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	221	627	0	ENST00000263464.3:c.108T>A	p.Tyr36Ter	p.Y36*	ENST00000263464	NM_001165.4	36	taT/taA																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343421	118343421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	157	595	0	ENST00000534358.1:c.1547C>T	p.Ser516Phe	p.S516F	ENST00000534358	NM_005933.3	516	tCc/tTc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118390431	118390431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	302	787	2	ENST00000534358.1:c.11245C>T	p.Arg3749Cys	p.R3749C	ENST00000534358	NM_005933.3	3749	Cgt/Tgt																																																																														
CBL	0	MSKCC	GRCh37	11	119156073	119156073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	285	831	0	ENST00000264033.4:c.1738C>T	p.Pro580Ser	p.P580S	ENST00000264033	NM_005188.3	580	Cct/Tct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431274	49431274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	270	501	2	ENST00000301067.7:c.9865C>T	p.Pro3289Ser	p.P3289S	ENST00000301067	NM_003482.3	3289	Cca/Tca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49442950	49442950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	346	779	2	ENST00000301067.7:c.3958G>A	p.Gly1320Arg	p.G1320R	ENST00000301067	NM_003482.3	1320	Gga/Aga																																																																														
CDK8	0	MSKCC	GRCh37	13	26970466	26970466	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	111	514	0	ENST00000381527.3:c.835T>A	p.Leu279Ile	p.L279I	ENST00000381527	NM_001260.1	279	Tta/Ata																																																																														
IRS2	0	MSKCC	GRCh37	13	110434895	110434896	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	327	1044	2	ENST00000375856.3:c.3505_3506delinsTT	p.Pro1169Phe	p.P1169F	ENST00000375856	NM_003749.2	1169	CCc/TTc																																																																														
TSHR	0	MSKCC	GRCh37	14	81422133	81422133	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	334	727	2	ENST00000298171.2:c.109T>C	p.Phe37Leu	p.F37L	ENST00000298171	NM_000369.2	37	Ttc/Ctc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67358509	67358509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	157	316	1	ENST00000327367.4:c.17C>T	p.Pro6Leu	p.P6L	ENST00000327367	NM_005902.3	6	cCt/cTt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934917	9934917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	228	720	1	ENST00000330684.3:c.1373G>A	p.Gly458Glu	p.G458E	ENST00000330684	NM_001134407.1	458	gGg/gAg																																																																														
CYLD	0	MSKCC	GRCh37	16	50820792	50820792	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	203	728	0	ENST00000398568.2:c.1967T>A	p.Ile656Asn	p.I656N	ENST00000398568	NM_001042412.1	656	aTt/aAt																																																																														
CYLD	0	MSKCC	GRCh37	16	50830258	50830258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	211	594	3	ENST00000398568.2:c.2701C>T	p.Pro901Ser	p.P901S	ENST00000398568	NM_001042412.1	901	Cct/Tct																																																																														
TP53	0	MSKCC	GRCh37	17	7579563	7579563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	317	845	1	ENST00000269305.4:c.124G>A	p.Asp42Asn	p.D42N	ENST00000269305	NM_001126112.2	42	Gat/Aat																																																																														
NF1	0	MSKCC	GRCh37	17	29552227	29552227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	203	810	2	ENST00000358273.4:c.1960C>T	p.Pro654Ser	p.P654S	ENST00000358273	NM_001042492.2	654	Cct/Tct																																																																														
CDK12	0	MSKCC	GRCh37	17	37687246	37687246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	292	740	1	ENST00000447079.4:c.4150G>A	p.Gly1384Arg	p.G1384R	ENST00000447079	NM_015083.1	1384	Ggg/Agg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37872120	37872120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	370	881	2	ENST00000269571.5:c.1441C>T	p.Pro481Ser	p.P481S	ENST00000269571		481	Ccc/Tcc																																																																														
YES1	0	MSKCC	GRCh37	18	743082	743082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	248	889	0	ENST00000314574.4:c.896C>T	p.Thr299Ile	p.T299I	ENST00000314574	NM_005433.3	299	aCc/aTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213470	36213471	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	345	994	3	ENST00000222270.7:c.2572_2573delinsAA	p.Gly858Asn	p.G858N	ENST00000222270	NM_014727.1	858	GGt/AAt																																																																														
ERCC2	0	MSKCC	GRCh37	19	45855574	45855574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	359	757	0	ENST00000391945.4:c.2083C>G	p.Arg695Gly	p.R695G	ENST00000391945	NM_000400.3	695	Cgc/Ggc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867691	45867691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	391	797	1	ENST00000391945.4:c.709C>A	p.His237Asn	p.H237N	ENST00000391945	NM_000400.3	237	Cac/Aac																																																																														
BBC3	0	MSKCC	GRCh37	19	47725053	47725053	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	383	918	3	ENST00000449228.1:c.691T>C	p.Cys231Arg	p.C231R	ENST00000449228	NM_001127240.2	231	Tgc/Cgc																																																																														
EP300	0	MSKCC	GRCh37	22	41545096	41545096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	332	891	1	ENST00000263253.7:c.2296C>T	p.Pro766Ser	p.P766S	ENST00000263253	NM_001429.3	766	Cct/Tct																																																																														
MLH1	0	MSKCC	GRCh37	3	37070326	37070327	+	missense_variant	Missense_Mutation	DNP	AA	AA	GC			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	192	658	0	ENST00000231790.2:c.1461_1462delinsGC	p.Lys488Gln	p.K488Q	ENST00000231790	NM_000249.3	487	cgAAag/cgGCag																																																																														
SETD2	0	MSKCC	GRCh37	3	47125841	47125841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	175	472	0	ENST00000409792.3:c.5429C>T	p.Pro1810Leu	p.P1810L	ENST00000409792	NM_014159.6	1810	cCt/cTt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643329	52643330	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	GAT			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	196	644	0	ENST00000394830.3:c.2564_2566dup	p.Asn855_Arg856insHis	p.N855_R856insH	ENST00000394830	NM_018313.4	856	cgg/cATCgg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52677358	52677358	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	257	634	0	ENST00000394830.3:c.901A>G	p.Thr301Ala	p.T301A	ENST00000394830	NM_018313.4	301	Act/Gct																																																																														
SOX2	0	MSKCC	GRCh37	3	181430845	181430845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	331	946	3	ENST00000325404.1:c.697C>T	p.Pro233Ser	p.P233S	ENST00000325404	NM_003106.3	233	Cct/Tct																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185184669	185184669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202042288		P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	207	638	1	ENST00000265026.3:c.1561C>T	p.Arg521Cys	p.R521C	ENST00000265026	NM_004721.4	521	Cgt/Tgt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526751	31526751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	198	663	0	ENST00000344624.3:c.289C>T	p.Pro97Ser	p.P97S	ENST00000344624		97	Cca/Tca																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177590	56177590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	214	538	2	ENST00000399503.3:c.2563C>T	p.Arg855Cys	p.R855C	ENST00000399503	NM_005921.1	855	Cgt/Tgt																																																																														
RASA1	0	MSKCC	GRCh37	5	86633791	86633791	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	113	417	0	ENST00000274376.6:c.900T>A	p.Ser300Arg	p.S300R	ENST00000274376	NM_002890.2	300	agT/agA																																																																														
RAD50	0	MSKCC	GRCh37	5	131915149	131915149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	274	931	0	ENST00000265335.6:c.506G>A	p.Gly169Glu	p.G169E	ENST00000265335		169	gGa/gAa																																																																														
CSF1R	0	MSKCC	GRCh37	5	149460463	149460463	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	333	782	4	ENST00000286301.3:c.174G>A	p.Trp58Ter	p.W58*	ENST00000286301	NM_005211.3	58	tgG/tgA																																																																														
NSD1	0	MSKCC	GRCh37	5	176662909	176662909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	187	677	0	ENST00000439151.2:c.3884A>G	p.Lys1295Arg	p.K1295R	ENST00000439151	NM_022455.4	1295	aAg/aGg																																																																														
MDC1	0	MSKCC	GRCh37	6	30670413	30670413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	301	746	3	ENST00000376406.3:c.6019G>A	p.Val2007Ile	p.V2007I	ENST00000376406	NM_014641.2	2007	Gtc/Atc																																																																														
MDC1	0	MSKCC	GRCh37	6	30671828	30671828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	382	888	0	ENST00000376406.3:c.5132C>T	p.Ser1711Phe	p.S1711F	ENST00000376406	NM_014641.2	1711	tCc/tTc																																																																														
TAP1	0	MSKCC	GRCh37	6	32818172	32818173	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	306	980	2	ENST00000354258.4:c.1352_1353delinsAA	p.Arg451Lys	p.R451K	ENST00000354258	NM_000593.5	451	aGG/aAA																																																																														
EPHA7	0	MSKCC	GRCh37	6	93964502	93964502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	190	633	1	ENST00000369303.4:c.2395C>T	p.Pro799Ser	p.P799S	ENST00000369303	NM_004440.3	799	Cca/Tca																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965694	93965694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	169	696	1	ENST00000369303.4:c.2234G>A	p.Gly745Glu	p.G745E	ENST00000369303	NM_004440.3	745	gGa/gAa																																																																														
PMS2	0	MSKCC	GRCh37	7	6027053	6027053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	254	616	3	ENST00000265849.7:c.1343G>A	p.Gly448Glu	p.G448E	ENST00000265849	NM_000535.5	448	gGa/gAa																																																																														
DUSP4	0	MSKCC	GRCh37	8	29195996	29195996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	351	808	1	ENST00000240100.2:c.602C>T	p.Pro201Leu	p.P201L	ENST00000240100	NM_001394.6	201	cCc/cTc																																																																														
PREX2	0	MSKCC	GRCh37	8	68939506	68939506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	168	793	0	ENST00000288368.4:c.491G>A	p.Gly164Glu	p.G164E	ENST00000288368	NM_024870.2	164	gGa/gAa																																																																														
PAX5	0	MSKCC	GRCh37	9	36923405	36923405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	322	928	2	ENST00000358127.4:c.857C>T	p.Pro286Leu	p.P286L	ENST00000358127	NM_001280556.1	286	cCt/cTt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98229623	98229623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	226	650	2	ENST00000331920.6:c.2335G>A	p.Asp779Asn	p.D779N	ENST00000331920	NM_000264.3	779	Gac/Aac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395288	139395288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	322	695	0	ENST00000277541.6:c.5650C>T	p.Pro1884Ser	p.P1884S	ENST00000277541	NM_017617.3	1884	Ccg/Tcg																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15826386	15826386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	250	384	2	ENST00000307771.7:c.430G>A	p.Glu144Lys	p.E144K	ENST00000307771	NM_005089.3	144	Gaa/Aaa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44913167	44913167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	239	414	0	ENST00000377967.4:c.842C>T	p.Pro281Leu	p.P281L	ENST00000377967	NM_021140.2	281	cCt/cTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	13	536	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	31	793	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
NF1	0	MSKCC	GRCh37	17	29556852	29556852	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	26	516	0	ENST00000358273.4:c.2851-1G>A		p.X951_splice	ENST00000358273	NM_001042492.2	951																																																																															
TERT	0	MSKCC	GRCh37	5	1264586	1264586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	372	773	2	ENST00000310581.5:c.2776G>A	p.Gly926Ser	p.G926S	ENST00000310581	NM_198253.2	926	Ggc/Agc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243507	41243510	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0020313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	416	922	0	ENST00000357654.3:c.4038_4041del	p.Arg1347GlufsTer18	p.R1347Efs*18	ENST00000357654	NM_007294.3	1346	gaAAGA/ga																																																																														
ROS1	0	MSKCC	GRCh37	6	117662353	117662353	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	187	706	0	ENST00000368508.3:c.5024A>C	p.Asn1675Thr	p.N1675T	ENST00000368508	NM_002944.2	1675	aAt/aCt																																																																														
LATS1	0	MSKCC	GRCh37	6	150001454	150001454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	680	946	0	ENST00000253339.5:c.2150G>T	p.Gly717Val	p.G717V	ENST00000253339		717	gGt/gTt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374347	118374348	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	100	815	0	ENST00000534358.1:c.7741dup	p.Thr2581AsnfsTer9	p.T2581Nfs*9	ENST00000534358	NM_005933.3	2580	-/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	40	547	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178511	56178511	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	35	437	0	ENST00000399503.3:c.3484G>T	p.Glu1162Ter	p.E1162*	ENST00000399503	NM_005921.1	1162	Gaa/Taa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177812	56177813	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0020317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	27	538	0	ENST00000399503.3:c.2789_2790del	p.Arg930ThrfsTer10	p.R930Tfs*10	ENST00000399503	NM_005921.1	929	GAg/g																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845504	151845504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	58	865	1	ENST00000262189.6:c.13508G>T	p.Cys4503Phe	p.C4503F	ENST00000262189	NM_170606.2	4503	tGc/tTc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938464	44938464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	77	821	2	ENST00000377967.4:c.3012G>T	p.Leu1004Phe	p.L1004F	ENST00000377967	NM_021140.2	1004	ttG/ttT																																																																														
MYC	0	MSKCC	GRCh37	8	128750639	128750639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	52	680	1	ENST00000377970.2:c.176C>T	p.Ala59Val	p.A59V	ENST00000377970	NM_002467.4	59	gCg/gTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8331643	8331643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	52	747	0	ENST00000356435.5:c.5473G>C	p.Gly1825Arg	p.G1825R	ENST00000356435		1825	Ggc/Cgc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36220873	36220873	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	18	272	0	ENST00000222270.7:c.4923C>A	p.Cys1641Ter	p.C1641*	ENST00000222270	NM_014727.1	1641	tgC/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	65	558	0				ENST00000310581	NM_198253.2																																																																																
PIK3R2	0	MSKCC	GRCh37	19	18266845	18266845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	67	812	0	ENST00000222254.8:c.156G>C	p.Gln52His	p.Q52H	ENST00000222254	NM_005027.3	52	caG/caC																																																																														
MDM2	0	MSKCC	GRCh37	12	69229702	69229702	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	39	505	0	ENST00000462284.1:c.778C>G	p.Leu260Val	p.L260V	ENST00000462284	NM_002392.5	260	Ctc/Gtc																																																																														
TERT	0	MSKCC	GRCh37	5	1268701	1268701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	37	855	1	ENST00000310581.5:c.2516C>T	p.Thr839Met	p.T839M	ENST00000310581	NM_198253.2	839	aCg/aTg																																																																														
CARD11	0	MSKCC	GRCh37	7	2985525	2985525	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	56	744	0	ENST00000396946.4:c.286G>C	p.Glu96Gln	p.E96Q	ENST00000396946	NM_032415.4	96	Gaa/Caa																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841276	15841276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	14	341	2	ENST00000307771.7:c.1360C>T	p.Arg454Trp	p.R454W	ENST00000307771	NM_005089.3	454	Cgg/Tgg																																																																														
HGF	0	MSKCC	GRCh37	7	81381559	81381559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	10	382	1	ENST00000222390.5:c.502C>T	p.Arg168Trp	p.R168W	ENST00000222390	NM_000601.4	168	Cgg/Tgg																																																																														
ID3	0	MSKCC	GRCh37	1	23885731	23885731	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	87	793	2	ENST00000374561.5:c.187C>T	p.Gln63Ter	p.Q63*	ENST00000374561	NM_002167.4	63	Cag/Tag																																																																														
MUTYH	0	MSKCC	GRCh37	1	45797180	45797180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	74	852	3	ENST00000372115.3:c.1193C>A	p.Ser398Ter	p.S398*	ENST00000372115	NM_001048171.1	398	tCa/tAa																																																																														
PARP1	0	MSKCC	GRCh37	1	226552856	226552856	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	37	556	0	ENST00000366794.5:c.2506-1G>C		p.X836_splice	ENST00000366794	NM_001618.3	836																																																																															
ARID5B	0	MSKCC	GRCh37	10	63810739	63810739	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201704836		P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	57	614	0	ENST00000279873.7:c.826G>A	p.Asp276Asn	p.D276N	ENST00000279873	NM_032199.2	276	Gat/Aat																																																																														
ARID5B	0	MSKCC	GRCh37	10	63810754	63810754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	44	593	0	ENST00000279873.7:c.841G>A	p.Ala281Thr	p.A281T	ENST00000279873	NM_032199.2	281	Gcc/Acc																																																																														
KDM5A	0	MSKCC	GRCh37	12	401975	401975	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	39	536	0	ENST00000399788.2:c.4816G>C	p.Glu1606Gln	p.E1606Q	ENST00000399788	NM_001042603.1	1606	Gag/Cag																																																																														
KDM5A	0	MSKCC	GRCh37	12	438048	438048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	34	598	0	ENST00000399788.2:c.1921C>T	p.Leu641Phe	p.L641F	ENST00000399788	NM_001042603.1	641	Ctc/Ttc																																																																														
ETV6	0	MSKCC	GRCh37	12	11992172	11992172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	75	645	0	ENST00000396373.4:c.262G>C	p.Glu88Gln	p.E88Q	ENST00000396373	NM_001987.4	88	Gaa/Caa																																																																														
CDK4	0	MSKCC	GRCh37	12	58144796	58144796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	45	657	0	ENST00000257904.6:c.432G>C	p.Glu144Asp	p.E144D	ENST00000257904	NM_000075.3	144	gaG/gaC																																																																														
CDK4	0	MSKCC	GRCh37	12	58145470	58145470	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	34	532	0	ENST00000257904.6:c.31G>T	p.Glu11Ter	p.E11*	ENST00000257904	NM_000075.3	11	Gaa/Taa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906744	32906744	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	32	740	0	ENST00000380152.3:c.1129G>C	p.Glu377Gln	p.E377Q	ENST00000380152		377	Gag/Cag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907300	32907300	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	27	631	0	ENST00000380152.3:c.1685G>C	p.Ser562Thr	p.S562T	ENST00000380152		562	aGc/aCc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81925165	81925165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	44	689	0	ENST00000359376.3:c.956C>G	p.Ser319Cys	p.S319C	ENST00000359376	NM_002661.3	319	tCt/tGt																																																																														
GPS2	0	MSKCC	GRCh37	17	7217458	7217458	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	65	641	2	ENST00000380728.2:c.338C>A	p.Ser113Ter	p.S113*	ENST00000380728		113	tCa/tAa																																																																														
CDK12	0	MSKCC	GRCh37	17	37687129	37687129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	22	649	1	ENST00000447079.4:c.4033G>A	p.Glu1345Lys	p.E1345K	ENST00000447079	NM_015083.1	1345	Gaa/Aaa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5221069	5221069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	36	745	0	ENST00000357368.4:c.3397G>C	p.Asp1133His	p.D1133H	ENST00000357368	NM_002850.3	1133	Gat/Cat																																																																														
JAK3	0	MSKCC	GRCh37	19	17942190	17942190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	31	617	2	ENST00000458235.1:c.2825C>A	p.Ser942Tyr	p.S942Y	ENST00000458235	NM_000215.3	942	tCc/tAc																																																																														
CIC	0	MSKCC	GRCh37	19	42791367	42791367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	102	866	0	ENST00000575354.2:c.427G>C	p.Glu143Gln	p.E143Q	ENST00000575354	NM_015125.3	143	Gag/Cag																																																																														
CIC	0	MSKCC	GRCh37	19	42794690	42794690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	67	773	1	ENST00000575354.2:c.1770C>A	p.Phe590Leu	p.F590L	ENST00000575354	NM_015125.3	590	ttC/ttA																																																																														
EPAS1	0	MSKCC	GRCh37	2	46609216	46609216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	166	658	0	ENST00000263734.3:c.2275A>G	p.Asn759Asp	p.N759D	ENST00000263734	NM_001430.4	759	Aat/Gat																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45657035	45657035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	23	607	0	ENST00000407780.3:c.121G>A	p.Glu41Lys	p.E41K	ENST00000407780	NM_001283052.1	41	Gaa/Aaa																																																																														
RYBP	0	MSKCC	GRCh37	3	72428497	72428497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	20	661	0	ENST00000477973.2:c.505G>C	p.Lys169Asn	p.K169N	ENST00000477973	NM_012234.5	169	aaG/aaC																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589169	67589169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	30	383	0	ENST00000274335.5:c.1157G>A	p.Arg386Gln	p.R386Q	ENST00000274335		386	cGa/cAa																																																																														
MSH3	0	MSKCC	GRCh37	5	80109449	80109449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	27	626	0	ENST00000265081.6:c.2702G>A	p.Gly901Glu	p.G901E	ENST00000265081	NM_002439.4	901	gGa/gAa																																																																														
FLT4	0	MSKCC	GRCh37	5	180056296	180056296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	60	866	0	ENST00000261937.6:c.948C>G	p.Ile316Met	p.I316M	ENST00000261937	NM_182925.4	316	atC/atG																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099925	157099925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	51	737	1	ENST00000346085.5:c.862G>A	p.Glu288Lys	p.E288K	ENST00000346085	NM_020732.3	288	Gaa/Aaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151855967	151855967	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140246095		P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	27	594	0	ENST00000262189.6:c.11651C>T	p.Thr3884Met	p.T3884M	ENST00000262189	NM_170606.2	3884	aCg/aTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151891528	151891528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	32	491	0	ENST00000262189.6:c.4504G>A	p.Asp1502Asn	p.D1502N	ENST00000262189	NM_170606.2	1502	Gat/Aat																																																																														
XRCC2	0	MSKCC	GRCh37	7	152346080	152346080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	33	668	0	ENST00000359321.1:c.490G>C	p.Glu164Gln	p.E164Q	ENST00000359321	NM_005431.1	164	Gaa/Caa																																																																														
PREX2	0	MSKCC	GRCh37	8	68968159	68968159	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	20	697	0	ENST00000288368.4:c.1188C>G	p.Ile396Met	p.I396M	ENST00000288368	NM_024870.2	396	atC/atG																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741730	145741730	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	103	839	0	ENST00000428558.2:c.773G>C	p.Gly258Ala	p.G258A	ENST00000428558	NM_004260.3	258	gGa/gCa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87342605	87342605	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	99	610	0	ENST00000277120.3:c.890C>G	p.Ser297Ter	p.S297*	ENST00000277120		297	tCa/tGa																																																																														
ATRX	0	MSKCC	GRCh37	X	76931791	76931791	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	17	322	0	ENST00000373344.5:c.3739G>C	p.Asp1247His	p.D1247H	ENST00000373344	NM_000489.3	1247	Gat/Cat																																																																														
ATRX	0	MSKCC	GRCh37	X	76938292	76938292	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	14	343	0	ENST00000373344.5:c.2456C>G	p.Ser819Ter	p.S819*	ENST00000373344	NM_000489.3	819	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	425	869	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
IRS2	0	MSKCC	GRCh37	13	110434682	110434682	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	162	1076	0	ENST00000375856.3:c.3719G>C	p.Arg1240Pro	p.R1240P	ENST00000375856	NM_003749.2	1240	cGc/cCc																																																																														
CDK12	0	MSKCC	GRCh37	17	37618547	37618547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	104	819	0	ENST00000447079.4:c.223G>A	p.Asp75Asn	p.D75N	ENST00000447079	NM_015083.1	75	Gat/Aat																																																																														
RNF43	0	MSKCC	GRCh37	17	56440919	56440919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	656	958	0	ENST00000407977.2:c.418G>C	p.Asp140His	p.D140H	ENST00000407977		140	Gac/Cac																																																																														
YES1	0	MSKCC	GRCh37	18	742923	742923	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	48	624	0	ENST00000314574.4:c.1055C>G	p.Ser352Ter	p.S352*	ENST00000314574	NM_005433.3	352	tCa/tGa																																																																														
BAP1	0	MSKCC	GRCh37	3	52436369	52436369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	184	960	1	ENST00000460680.1:c.2125C>A	p.Leu709Ile	p.L709I	ENST00000460680	NM_004656.3	709	Ctc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7579357	7579363	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGAAA	ACGGAAA	TTT			P-0020327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	236	769	5	ENST00000269305.4:c.324_330delinsAAA	p.Phe109AsnfsTer13	p.F109Nfs*13	ENST00000269305	NM_001126112.2	108	ggTTTCCGT/ggAAA																																																																														
LATS2	0	MSKCC	GRCh37	13	21555775	21555776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	86	837	0	ENST00000382592.4:c.2494dup	p.Arg832LysfsTer13	p.R832Kfs*13	ENST00000382592	NM_014572.2	832	aga/aAga																																																																														
SETD2	0	MSKCC	GRCh37	3	47125859	47125859	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	59	335	0	ENST00000409792.3:c.5411T>C	p.Leu1804Ser	p.L1804S	ENST00000409792	NM_014159.6	1804	tTg/tCg																																																																														
BAP1	0	MSKCC	GRCh37	3	52436823	52436824	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	90	929	0	ENST00000460680.1:c.1954dup	p.Glu652GlyfsTer12	p.E652Gfs*12	ENST00000460680	NM_004656.3	652	gag/gGag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	179	743	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	83	321	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
RYBP	0	MSKCC	GRCh37	3	72427721	72427721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	222	604	0	ENST00000477973.2:c.767G>A	p.Val257Ile	p.V257I	ENST00000477973	NM_012234.5	257	Gtc/Atc																																																																														
APC	0	MSKCC	GRCh37	5	112177787	112177787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	105	486	0	ENST00000257430.4:c.6496C>T	p.Arg2166Ter	p.R2166*	ENST00000257430	NM_000038.5	2166	Cga/Tga																																																																														
TET1	0	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	250	696	2	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	286	788	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	88	787	1	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	335	734	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	219	673	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023327	27023327	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	66	367	0	ENST00000324856.7:c.437del	p.Pro146GlnfsTer86	p.P146Qfs*86	ENST00000324856	NM_006015.4	145	Ccc/cc																																																																														
EP300	0	MSKCC	GRCh37	22	41572252	41572254	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TCT	TCT	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	89	709	0	ENST00000263253.7:c.4785_4787delCTT	p.Phe1596del	p.F1596del	ENST00000263253	NM_001429.3	1594	gTCTtc/gtc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	103	623	1	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	82	626	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
HRAS	0	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	149	712	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc																																																																														
FLT1	0	MSKCC	GRCh37	13	28913322	28913322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	116	910	3	ENST00000282397.4:c.2471G>A	p.Arg824Gln	p.R824Q	ENST00000282397	NM_002019.4	824	cGg/cAg																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	179	283	9	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	88	506	0	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	129	769	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	174	960	9	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	187	832	0	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281250	15281250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	328	925	4	ENST00000263388.2:c.5006G>A	p.Arg1669His	p.R1669H	ENST00000263388	NM_000435.2	1669	cGc/cAc																																																																														
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	185	851	4	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																																																														
BCOR	0	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	155	792	1	ENST00000378444.4:c.3621delA	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1218	221	980	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																														
BRAF	0	MSKCC	GRCh37	7	140501260	140501260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	190	764	0	ENST00000288602.6:c.812G>A	p.Arg271His	p.R271H	ENST00000288602	NM_004333.4	271	cGt/cAt																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375194	31375194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	124	826	2	ENST00000328111.2:c.596del	p.Gly199AlafsTer27	p.G199Afs*27	ENST00000328111	NM_006892.3	197	caG/ca																																																																														
NCOR1	0	MSKCC	GRCh37	17	15961011	15961011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142717545		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	199	576	0	ENST00000268712.3:c.6209C>T	p.Ser2070Leu	p.S2070L	ENST00000268712	NM_006311.3	2070	tCg/tTg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527648	157527648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	130	799	3	ENST00000346085.5:c.5373A>G	p.Ile1791Met	p.I1791M	ENST00000346085	NM_020732.3	1791	atA/atG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1020	196	879	1	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	240	645	1	ENST00000435504.4:c.2333dupC	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500845	8500845	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	209	749	1	ENST00000356435.5:c.2037del	p.Lys679AsnfsTer9	p.K679Nfs*9	ENST00000356435		679	aaA/aa																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954022	32954023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1305653361		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	158	710	8	ENST00000380152.3:c.9097dup	p.Thr3033AsnfsTer11	p.T3033Nfs*11	ENST00000380152		3030	aca/acAa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021211	31021211	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	283	774	1	ENST00000375687.4:c.1210C>T	p.Arg404Ter	p.R404*	ENST00000375687	NM_015338.5	404	Cga/Tga																																																																														
MST1R	0	MSKCC	GRCh37	3	49940112	49940112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	260	766	3	ENST00000296474.3:c.931del	p.Ala311ProfsTer27	p.A311Pfs*27	ENST00000296474	NM_002447.2	311	Gcc/cc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16012207	16012207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	254	679	0	ENST00000268712.3:c.2075A>T	p.Glu692Val	p.E692V	ENST00000268712	NM_006311.3	692	gAa/gTa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	82	624	3	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	323	926	7	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546835	9546835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	169	594	1	ENST00000353224.5:c.1187C>T	p.Ser396Phe	p.S396F	ENST00000353224	NM_177990.2	396	tCc/tTc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1918681	1918681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	193	773	1	ENST00000382891.5:c.844G>A	p.Val282Ile	p.V282I	ENST00000382891	NM_133335.3	282	Gta/Ata																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432420	49432420	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	182	823	0	ENST00000301067.7:c.8719del	p.Tyr2907ThrfsTer3	p.Y2907Tfs*3	ENST00000301067	NM_003482.3	2907	Tac/ac																																																																														
MALT1	0	MSKCC	GRCh37	18	56390435	56390435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	227	625	2	ENST00000348428.3:c.1174C>T	p.Arg392Cys	p.R392C	ENST00000348428	NM_006785.3	392	Cgt/Tgt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9778839	9778839	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	135	897	0	ENST00000377346.4:c.1108del	p.Val370CysfsTer28	p.V370Cfs*28	ENST00000377346	NM_005026.3	370	Gtg/tg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023010	27023010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	32	86	0	ENST00000324856.7:c.116C>A	p.Ala39Glu	p.A39E	ENST00000324856	NM_006015.4	39	gCg/gAg																																																																														
SESN2	0	MSKCC	GRCh37	1	28598294	28598294	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	350	979	0	ENST00000253063.3:c.266A>G	p.Tyr89Cys	p.Y89C	ENST00000253063	NM_031459.4	89	tAc/tGc																																																																														
CSDE1	0	MSKCC	GRCh37	1	115280601	115280601	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	292	851	0	ENST00000438362.2:c.430G>T	p.Glu144Ter	p.E144*	ENST00000438362	NM_001242891.1	144	Gaa/Taa																																																																														
CDC73	0	MSKCC	GRCh37	1	193111138	193111138	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	94	596	0	ENST00000367435.3:c.671T>C	p.Ile224Thr	p.I224T	ENST00000367435	NM_024529.4	224	aTt/aCt																																																																														
FH	0	MSKCC	GRCh37	1	241675272	241675272	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	61	719	0	ENST00000366560.3:c.550del	p.Ser184AlafsTer18	p.S184Afs*18	ENST00000366560	NM_000143.3	184	Agc/gc																																																																														
SMYD3	0	MSKCC	GRCh37	1	246021902	246021902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	340	900	0	ENST00000388985.4:c.972C>A	p.Asn324Lys	p.N324K	ENST00000388985		324	aaC/aaA																																																																														
PTEN	0	MSKCC	GRCh37	10	89720852	89720853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATACTT			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	106	457	0	ENST00000371953.3:c.1004_1010dup	p.Phe337LeufsTer8	p.F337Lfs*8	ENST00000371953	NM_000314.4	335	cga/cGATACTTga																																																																														
SUFU	0	MSKCC	GRCh37	10	104268945	104268945	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	180	793	0	ENST00000369902.3:c.202T>A	p.Leu68Met	p.L68M	ENST00000369902	NM_016169.3	68	Ttg/Atg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274711	123274711	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	190	835	0	ENST00000358487.5:c.1207A>T	p.Thr403Ser	p.T403S	ENST00000358487	NM_000141.4	403	Acg/Tcg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274833	123274833	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	198	592	0	ENST00000358487.5:c.1085C>T	p.Ala362Val	p.A362V	ENST00000358487	NM_000141.4	362	gCg/gTg																																																																														
CCND1	0	MSKCC	GRCh37	11	69457949	69457949	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	233	777	0	ENST00000227507.2:c.349A>G	p.Ile117Val	p.I117V	ENST00000227507	NM_053056.2	117	Atc/Gtc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374039	118374039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	228	613	1	ENST00000534358.1:c.7432G>T	p.Gly2478Cys	p.G2478C	ENST00000534358	NM_005933.3	2478	Ggc/Tgc																																																																														
ARID2	0	MSKCC	GRCh37	12	46298717	46298717	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	182	580	0	ENST00000334344.6:c.5364A>T	p.Arg1788Ser	p.R1788S	ENST00000334344	NM_152641.2	1788	agA/agT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431797	49431798	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	95	742	0	ENST00000301067.7:c.9341_9342del	p.Val3114AlafsTer3	p.V3114Afs*3	ENST00000301067	NM_003482.3	3114	gTG/g																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434562	49434562	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	160	844	4	ENST00000301067.7:c.6991delC	p.Leu2331Ter	p.L2331*	ENST00000301067	NM_003482.3	2331	Ctg/tg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434839	49434839	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1191	170	968	0	ENST00000301067.7:c.6714del	p.Ser2239ProfsTer25	p.S2239Pfs*25	ENST00000301067	NM_003482.3	2238	ccC/cc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495104	56495104	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	105	854	0	ENST00000267101.3:c.3461A>C	p.Glu1154Ala	p.E1154A	ENST00000267101	NM_001982.3	1154	gAg/gCg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856113	111856122	+	frameshift_variant	Frame_Shift_Del	DEL	ACGCGCCGCT	ACGCGCCGCT	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	97	686	0	ENST00000341259.2:c.164_173del	p.His55ArgfsTer139	p.H55Rfs*139	ENST00000341259	NM_005475.2	55	cACGCGCCGCTg/cg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434524	121434524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	200	830	0	ENST00000257555.6:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000257555		430	Ggt/Tgt																																																																														
POLE	0	MSKCC	GRCh37	12	133215778	133215778	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	334	831	0	ENST00000320574.5:c.5485T>C	p.Ser1829Pro	p.S1829P	ENST00000320574	NM_006231.2	1829	Tcc/Ccc																																																																														
POLE	0	MSKCC	GRCh37	12	133219459	133219459	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	100	943	0	ENST00000320574.5:c.4675A>G	p.Thr1559Ala	p.T1559A	ENST00000320574	NM_006231.2	1559	Act/Gct																																																																														
POLE	0	MSKCC	GRCh37	12	133253132	133253132	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	209	714	0	ENST00000320574.5:c.909G>T	p.Gln303His	p.Q303H	ENST00000320574	NM_006231.2	303	caG/caT																																																																														
FLT3	0	MSKCC	GRCh37	13	28623783	28623783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	134	810	0	ENST00000241453.7:c.871G>T	p.Ala291Ser	p.A291S	ENST00000241453	NM_004119.2	291	Gca/Tca																																																																														
FLT1	0	MSKCC	GRCh37	13	28893605	28893605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	107	645	0	ENST00000282397.4:c.3241G>A	p.Asp1081Asn	p.D1081N	ENST00000282397	NM_002019.4	1081	Gac/Aac																																																																														
ERCC5	0	MSKCC	GRCh37	13	103524568	103524568	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	213	422	4	ENST00000355739.4:c.2705del	p.Asn902IlefsTer4	p.N902Ifs*4	ENST00000355739	NM_000123.3	900	cAa/ca																																																																														
GREM1	0	MSKCC	GRCh37	15	33022973	33022973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	100	544	2	ENST00000300177.4:c.82G>T	p.Gly28Trp	p.G28W	ENST00000300177	NM_001191322.1	28	Ggg/Tgg																																																																														
GREM1	0	MSKCC	GRCh37	15	33022989	33022990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	74	566	0	ENST00000300177.4:c.104dup	p.Pro36AlafsTer8	p.P36Afs*8	ENST00000300177	NM_001191322.1	33	atc/atCc																																																																														
SPRED1	0	MSKCC	GRCh37	15	38631981	38631981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	150	966	5	ENST00000299084.4:c.471delT	p.Gln158SerfsTer16	p.Q158Sfs*16	ENST00000299084	NM_152594.2	156	cTt/ct																																																																														
MGA	0	MSKCC	GRCh37	15	41991104	41991104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	223	683	1	ENST00000219905.7:c.2057C>T	p.Ser686Phe	p.S686F	ENST00000219905	NM_001164273.1	686	tCt/tTt																																																																														
MGA	0	MSKCC	GRCh37	15	42041419	42041419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	254	807	1	ENST00000219905.7:c.5614G>A	p.Gly1872Arg	p.G1872R	ENST00000219905	NM_001164273.1	1872	Ggg/Agg																																																																														
B2M	0	MSKCC	GRCh37	15	45007690	45007690	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	128	636	0	ENST00000558401.1:c.137A>G	p.Tyr46Cys	p.Y46C	ENST00000558401	NM_004048.2	46	tAt/tGt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678547	88678547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	144	523	2	ENST00000360948.2:c.989delC	p.Pro330HisfsTer84	p.P330Hfs*84	ENST00000360948	NM_001012338.2	330	cCa/ca																																																																														
IGF1R	0	MSKCC	GRCh37	15	99452077	99452077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	63	601	0	ENST00000268035.6:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000268035	NM_000875.3	471	Cgc/Tgc																																																																														
TSC2	0	MSKCC	GRCh37	16	2131634	2131634	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	145	870	0	ENST00000219476.3:c.3649A>G	p.Ser1217Gly	p.S1217G	ENST00000219476	NM_000548.3	1217	Agc/Ggc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2215907	2215907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	77	799	0	ENST00000326181.6:c.109G>A	p.Ala37Thr	p.A37T	ENST00000326181	NM_032271.2	37	Gcc/Acc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778713	3778713	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	181	855	0	ENST00000262367.5:c.6335A>G	p.Gln2112Arg	p.Q2112R	ENST00000262367	NM_004380.2	2112	cAg/cGg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781802	3781802	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	108	743	0	ENST00000262367.5:c.4865A>T	p.Tyr1622Phe	p.Y1622F	ENST00000262367	NM_004380.2	1622	tAt/tTt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3788558	3788558	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	67	556	0	ENST00000262367.5:c.4394+2T>G		p.X1465_splice	ENST00000262367	NM_004380.2	1465																																																																															
CREBBP	0	MSKCC	GRCh37	16	3808944	3808944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	193	863	0	ENST00000262367.5:c.3280C>T	p.Leu1094Phe	p.L1094F	ENST00000262367	NM_004380.2	1094	Ctc/Ttc																																																																														
PALB2	0	MSKCC	GRCh37	16	23641509	23641510	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	208	971	0	ENST00000261584.4:c.1965dup	p.Pro656SerfsTer7	p.P656Sfs*7	ENST00000261584	NM_024675.3	655	-/T																																																																														
CTCF	0	MSKCC	GRCh37	16	67645887	67645887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	172	870	1	ENST00000264010.4:c.815G>A	p.Ser272Asn	p.S272N	ENST00000264010	NM_006565.3	272	aGt/aAt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993930	72993930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	144	889	0	ENST00000268489.5:c.115A>G	p.Met39Val	p.M39V	ENST00000268489	NM_006885.3	39	Atg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	284	906	0	ENST00000269305.4:c.818del	p.Arg273LeufsTer72	p.R273Lfs*72	ENST00000269305	NM_001126112.2	273	cGt/ct																																																																														
SUZ12	0	MSKCC	GRCh37	17	30293209	30293209	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	209	664	0	ENST00000322652.5:c.503del	p.Asn168MetfsTer22	p.N168Mfs*22	ENST00000322652	NM_015355.2	167	Aaa/aa																																																																														
RNF43	0	MSKCC	GRCh37	17	56435926	56435926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	210	577	0	ENST00000407977.2:c.1211G>A	p.Arg404His	p.R404H	ENST00000407977		404	cGc/cAc																																																																														
RNF43	0	MSKCC	GRCh37	17	56492791	56492792	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	313	873	0	ENST00000407977.2:c.147_148del	p.Arg49SerfsTer25	p.R49Sfs*25	ENST00000407977		49	agAGtg/agtg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59934572	59934572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	190	511	0	ENST00000259008.2:c.226G>A	p.Val76Ile	p.V76I	ENST00000259008	NM_032043.2	76	Gta/Ata																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603011	48603011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	88	450	0	ENST00000342988.3:c.1312T>C	p.Phe438Leu	p.F438L	ENST00000342988	NM_005359.5	438	Ttt/Ctt																																																																														
CARM1	0	MSKCC	GRCh37	19	11015752	11015752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	217	528	3	ENST00000327064.4:c.346G>A	p.Asp116Asn	p.D116N	ENST00000327064	NM_199141.1	116	Gat/Aat																																																																														
CARM1	0	MSKCC	GRCh37	19	11031523	11031523	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	146	1022	0	ENST00000327064.4:c.1438A>G	p.Thr480Ala	p.T480A	ENST00000327064	NM_199141.1	480	Acg/Gcg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132435	11132435	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	114	872	0	ENST00000344626.4:c.2651A>T	p.His884Leu	p.H884L	ENST00000344626	NM_003072.3	884	cAc/cTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281520	15281520	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	120	853	0	ENST00000263388.2:c.4853A>C	p.Glu1618Ala	p.E1618A	ENST00000263388	NM_000435.2	1618	gAg/gCg																																																																														
BABAM1	0	MSKCC	GRCh37	19	17389766	17389766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	169	969	1	ENST00000359435.4:c.899C>T	p.Ala300Val	p.A300V	ENST00000359435	NM_001033549.1	300	gCc/gTc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18271341	18271341	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	331	792	0	ENST00000222254.8:c.383T>C	p.Leu128Pro	p.L128P	ENST00000222254	NM_005027.3	128	cTg/cCg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212612	36212612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	179	989	0	ENST00000222270.7:c.2363T>C	p.Val788Ala	p.V788A	ENST00000222270	NM_014727.1	788	gTa/gCa																																																																														
BBC3	0	MSKCC	GRCh37	19	47725151	47725151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	365	915	2	ENST00000449228.1:c.593C>T	p.Pro198Leu	p.P198L	ENST00000449228	NM_001127240.2	198	cCg/cTg																																																																														
POLD1	0	MSKCC	GRCh37	19	50905999	50905999	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	237	744	0	ENST00000440232.2:c.970+1G>A		p.X324_splice	ENST00000440232	NM_002691.3	324																																																																															
POLD1	0	MSKCC	GRCh37	19	50918151	50918151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	327	863	2	ENST00000440232.2:c.2468G>A	p.Arg823His	p.R823H	ENST00000440232	NM_002691.3	823	cGc/cAc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467428	25467428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	283	772	2	ENST00000264709.3:c.1648G>A	p.Gly550Arg	p.G550R	ENST00000264709	NM_175629.2	550	Gga/Aga																																																																														
MSH2	0	MSKCC	GRCh37	2	47630430	47630430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	314	799	0	ENST00000233146.2:c.100G>A	p.Val34Met	p.V34M	ENST00000233146	NM_000251.2	34	Gtg/Atg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023271	31023271	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	326	822	0	ENST00000375687.4:c.2756T>C	p.Ile919Thr	p.I919T	ENST00000375687	NM_015338.5	919	aTa/aCa																																																																														
EP300	0	MSKCC	GRCh37	22	41565533	41565533	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	142	756	1	ENST00000263253.7:c.4199G>T	p.Ser1400Ile	p.S1400I	ENST00000263253	NM_001429.3	1400	aGt/aTt																																																																														
MST1R	0	MSKCC	GRCh37	3	49927952	49927952	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	159	873	0	ENST00000296474.3:c.3776T>C	p.Leu1259Pro	p.L1259P	ENST00000296474	NM_002447.2	1259	cTg/cCg																																																																														
MST1R	0	MSKCC	GRCh37	3	49934053	49934053	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	132	801	1	ENST00000296474.3:c.2359A>T	p.Thr787Ser	p.T787S	ENST00000296474	NM_002447.2	787	Acc/Tcc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52668777	52668777	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	115	724	0	ENST00000394830.3:c.1142A>C	p.Asp381Ala	p.D381A	ENST00000394830	NM_018313.4	381	gAt/gCt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670324	134670324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	118	620	0	ENST00000398015.3:c.235C>T	p.Arg79Trp	p.R79W	ENST00000398015	NM_004441.4	79	Cgg/Tgg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1952803	1952803	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144714547		P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	193	606	3	ENST00000382891.5:c.1886C>T	p.Ser629Leu	p.S629L	ENST00000382891	NM_133335.3	629	tCg/tTg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217148	66217148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	215	817	0	ENST00000273854.3:c.2467del	p.Arg823GlyfsTer28	p.R823Gfs*28	ENST00000273854	NM_004439.5	823	Cgg/gg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38958816	38958816	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	107	627	0	ENST00000357387.3:c.2296A>T	p.Ile766Phe	p.I766F	ENST00000357387	NM_152756.3	766	Att/Ttt																																																																														
RICTOR	0	MSKCC	GRCh37	5	38963040	38963040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	62	651	0	ENST00000357387.3:c.1504A>G	p.Ile502Val	p.I502V	ENST00000357387	NM_152756.3	502	Att/Gtt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56189395	56189395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	124	867	0	ENST00000399503.3:c.4427A>G	p.His1476Arg	p.H1476R	ENST00000399503	NM_005921.1	1476	cAt/cGt																																																																														
MSH3	0	MSKCC	GRCh37	5	79960995	79960995	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	129	727	0	ENST00000265081.6:c.392C>A	p.Ser131Ter	p.S131*	ENST00000265081	NM_002439.4	131	tCa/tAa																																																																														
APC	0	MSKCC	GRCh37	5	112164671	112164671	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	49	412	0	ENST00000257430.4:c.1743+2T>C		p.X581_splice	ENST00000257430	NM_000038.5	581																																																																															
NSD1	0	MSKCC	GRCh37	5	176719097	176719097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	95	437	0	ENST00000439151.2:c.6401A>G	p.Lys2134Arg	p.K2134R	ENST00000439151	NM_022455.4	2134	aAg/aGg																																																																														
IRF4	0	MSKCC	GRCh37	6	401624	401624	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	101	639	0	ENST00000380956.4:c.946G>C	p.Val316Leu	p.V316L	ENST00000380956	NM_001195286.1	316	Gtc/Ctc																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910782	29910782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	132	798	0	ENST00000376809.5:c.322T>C	p.Tyr108His	p.Y108H	ENST00000376809	NM_002116.7	108	Tac/Cac																																																																														
TAP1	0	MSKCC	GRCh37	6	32816544	32816544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	371	966	4	ENST00000354258.4:c.1631G>A	p.Arg544His	p.R544H	ENST00000354258	NM_000593.5	544	cGc/cAc																																																																														
PMS2	0	MSKCC	GRCh37	7	6035163	6035163	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	160	576	0	ENST00000265849.7:c.903+2T>C		p.X301_splice	ENST00000265849	NM_000535.5	301																																																																															
EGFR	0	MSKCC	GRCh37	7	55221773	55221773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	134	769	1	ENST00000275493.2:c.817A>G	p.Thr273Ala	p.T273A	ENST00000275493	NM_005228.3	273	Acc/Gcc																																																																														
EGFR	0	MSKCC	GRCh37	7	55270246	55270246	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	331	807	0	ENST00000275493.2:c.3199C>T	p.Gln1067Ter	p.Q1067*	ENST00000275493	NM_005228.3	1067	Cag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151848622	151848622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	68	626	0	ENST00000262189.6:c.12571G>A	p.Ala4191Thr	p.A4191T	ENST00000262189	NM_170606.2	4191	Gca/Aca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151900017	151900017	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	63	742	0	ENST00000262189.6:c.4092+2T>C		p.X1364_splice	ENST00000262189	NM_170606.2	1364																																																																															
PREX2	0	MSKCC	GRCh37	8	68864700	68864700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	263	595	0	ENST00000288368.4:c.71G>A	p.Arg24His	p.R24H	ENST00000288368	NM_024870.2	24	cGc/cAc																																																																														
AGO2	0	MSKCC	GRCh37	8	141583011	141583011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	299	873	1	ENST00000220592.5:c.236T>C	p.Val79Ala	p.V79A	ENST00000220592	NM_012154.3	79	gTc/gCc																																																																														
KLF4	0	MSKCC	GRCh37	9	110249447	110249447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	194	951	0	ENST00000374672.4:c.1126C>T	p.Pro376Ser	p.P376S	ENST00000374672	NM_004235.4	376	Cca/Tca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396353	139396353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	128	821	3	ENST00000277541.6:c.5485G>A	p.Val1829Met	p.V1829M	ENST00000277541	NM_017617.3	1829	Gtg/Atg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399519	139399519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	142	760	2	ENST00000277541.6:c.4624G>A	p.Asp1542Asn	p.D1542N	ENST00000277541	NM_017617.3	1542	Gac/Aac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139407952	139407952	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	202	923	3	ENST00000277541.6:c.2245A>T	p.Asn749Tyr	p.N749Y	ENST00000277541	NM_017617.3	749	Aac/Tac																																																																														
TRAF2	0	MSKCC	GRCh37	9	139802604	139802604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	325	852	2	ENST00000247668.2:c.449G>A	p.Arg150His	p.R150H	ENST00000247668	NM_021138.3	150	cGc/cAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39916525	39916525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	155	925	2	ENST00000378444.4:c.4478G>A	p.Arg1493Gln	p.R1493Q	ENST00000378444	NM_001123385.1	1493	cGg/cAg																																																																														
BCOR	0	MSKCC	GRCh37	X	39933523	39933523	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	191	860	0	ENST00000378444.4:c.1076A>G	p.Lys359Arg	p.K359R	ENST00000378444	NM_001123385.1	359	aAg/aGg																																																																														
BCOR	0	MSKCC	GRCh37	X	39934231	39934231	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	136	903	0	ENST00000378444.4:c.368A>G	p.Gln123Arg	p.Q123R	ENST00000378444	NM_001123385.1	123	cAg/cGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47030482	47030482	+	intron_variant	Intron	SNP	A	A	G			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	116	864	0	ENST00000329236.7:c.201+1585A>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																
STAG2	0	MSKCC	GRCh37	X	123215268	123215268	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	85	731	0	ENST00000218089.9:c.2814T>A	p.Phe938Leu	p.F938L	ENST00000218089	NM_001042749.1	938	ttT/ttA																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	82	726	1	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	116	685	5	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	82	697	3	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	58	272	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	80	617	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	88	752	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
APC	0	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	44	458	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	84	721	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
SETD2	0	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	91	720	1	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																														
ATRX	0	MSKCC	GRCh37	X	76909629	76909629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	81	841	2	ENST00000373344.5:c.4276C>T	p.Arg1426Ter	p.R1426*	ENST00000373344	NM_000489.3	1426	Cga/Tga																																																																														
DIS3	0	MSKCC	GRCh37	13	73346884	73346884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	20	493	3	ENST00000377767.4:c.1333del	p.Ser445HisfsTer20	p.S445Hfs*20	ENST00000377767	NM_014953.3	445	Tca/ca																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	50	485	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98231290	98231290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	90	804	1	ENST00000331920.6:c.1993C>T	p.Arg665Cys	p.R665C	ENST00000331920	NM_000264.3	665	Cgc/Tgc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	63	814	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	122	511	1	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																														
DDR2	0	MSKCC	GRCh37	1	162724626	162724626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	81	575	1	ENST00000367921.3:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000367921	NM_006182.2	133	cGg/cAg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522601	176522601	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	34	777	1	ENST00000292408.4:c.1703delC	p.Pro568GlnfsTer53	p.P568Qfs*53	ENST00000292408	NM_213647.1	566	cgC/cg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	95	821	5	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	28	759	4	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	79	801	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	98	864	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	26	606	3	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	24	547	2	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	120	889	3	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	73	748	1	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	69	747	2	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																														
CDK12	0	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	66	588	0	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																																																														
MDM2	0	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	52	541	1	ENST00000462284.1:c.961delC	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	65	562	2	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																																																														
RYBP	0	MSKCC	GRCh37	3	72427568	72427568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	59	352	1	ENST00000477973.2:c.920G>A	p.Asp308Asn	p.D308N	ENST00000477973	NM_012234.5	308	Gac/Aac																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	107	723	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
TET1	0	MSKCC	GRCh37	10	70450582	70450582	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150708897		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	59	643	1	ENST00000373644.4:c.5422G>A	p.Val1808Met	p.V1808M	ENST00000373644	NM_030625.2	1808	Gtg/Atg																																																																														
MDC1	0	MSKCC	GRCh37	6	30681463	30681463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	80	643	2	ENST00000376406.3:c.549del	p.Lys183AsnfsTer9	p.K183Nfs*9	ENST00000376406	NM_014641.2	183	aaA/aa																																																																														
CDK4	0	MSKCC	GRCh37	12	58144708	58144708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	67	594	1	ENST00000257904.6:c.520G>A	p.Val174Met	p.V174M	ENST00000257904	NM_000075.3	174	Gtg/Atg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508133	106508133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	27	300	0	ENST00000359195.3:c.127G>A	p.Val43Met	p.V43M	ENST00000359195	NM_002649.2	43	Gtg/Atg																																																																														
ERBB4	0	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	T	T	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	40	644	1	ENST00000342788.4:c.1delA	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																																																														
EP300	0	MSKCC	GRCh37	22	41562635	41562635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	121	706	0	ENST00000263253.7:c.3839C>T	p.Ala1280Val	p.A1280V	ENST00000263253	NM_001429.3	1280	gCa/gTa																																																																														
PMS1	0	MSKCC	GRCh37	2	190682810	190682810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	66	625	3	ENST00000441310.2:c.492delA	p.Lys164AsnfsTer6	p.K164Nfs*6	ENST00000441310	NM_000534.4	162	gcA/gc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164745	36164745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	38	778	0	ENST00000300305.3:c.1130A>G	p.Tyr377Cys	p.Y377C	ENST00000300305		377	tAc/tGc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	85	817	8	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	219	910	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	101	828	3	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	137	813	7	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																														
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	86	802	0	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391932	139391932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	91	846	2	ENST00000277541.6:c.6259C>T	p.Arg2087Trp	p.R2087W	ENST00000277541	NM_017617.3	2087	Cgg/Tgg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15942857	15942857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	67	661	2	ENST00000268712.3:c.6845A>G	p.His2282Arg	p.H2282R	ENST00000268712	NM_006311.3	2282	cAt/cGt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9776086	9776086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	46	685	2	ENST00000377346.4:c.550C>T	p.Arg184Trp	p.R184W	ENST00000377346	NM_005026.3	184	Cgg/Tgg																																																																														
MTOR	0	MSKCC	GRCh37	1	11294235	11294235	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	88	708	3	ENST00000361445.4:c.2296C>T	p.Arg766Ter	p.R766*	ENST00000361445	NM_004958.3	766	Cga/Tga																																																																														
MTOR	0	MSKCC	GRCh37	1	11297916	11297916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	26	601	0	ENST00000361445.4:c.2192G>A	p.Arg731His	p.R731H	ENST00000361445	NM_004958.3	731	cGc/cAc																																																																														
MTOR	0	MSKCC	GRCh37	1	11300569	11300569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	91	772	1	ENST00000361445.4:c.1577G>A	p.Arg526His	p.R526H	ENST00000361445	NM_004958.3	526	cGt/cAt																																																																														
MTOR	0	MSKCC	GRCh37	1	11317100	11317100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	81	760	1	ENST00000361445.4:c.394C>T	p.Arg132Cys	p.R132C	ENST00000361445	NM_004958.3	132	Cgt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27102110	27102110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	83	792	2	ENST00000324856.7:c.5036G>A	p.Gly1679Asp	p.G1679D	ENST00000324856	NM_006015.4	1679	gGt/gAt																																																																														
NUF2	0	MSKCC	GRCh37	1	163315514	163315514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	80	752	0	ENST00000271452.3:c.854G>A	p.Cys285Tyr	p.C285Y	ENST00000271452	NM_145697.2	285	tGc/tAc																																																																														
RFWD2	0	MSKCC	GRCh37	1	175958497	175958497	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	69	577	2	ENST00000367669.3:c.1847+1G>A		p.X616_splice	ENST00000367669	NM_022457.5	616																																																																															
H3F3A	0	MSKCC	GRCh37	1	226253362	226253362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	61	442	0	ENST00000366813.1:c.134G>A	p.Gly45Asp	p.G45D	ENST00000366813		45	gGt/gAt																																																																														
RET	0	MSKCC	GRCh37	10	43601845	43601845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	64	618	3	ENST00000355710.3:c.889C>T	p.Arg297Cys	p.R297C	ENST00000355710	NM_020975.4	297	Cgt/Tgt																																																																														
HRAS	0	MSKCC	GRCh37	11	533503	533503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	118	842	4	ENST00000311189.7:c.400G>A	p.Ala134Thr	p.A134T	ENST00000311189		134	Gcc/Acc																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380391	14380391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	49	366	0	ENST00000256196.4:c.26G>A	p.Gly9Asp	p.G9D	ENST00000256196		9	gGc/gAc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71941274	71941274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	73	799	2	ENST00000298229.2:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000298229	NM_001567.3	350	cGg/cAg																																																																														
ATM	0	MSKCC	GRCh37	11	108200990	108200990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	68	651	2	ENST00000278616.4:c.7357C>T	p.Arg2453Cys	p.R2453C	ENST00000278616	NM_000051.3	2453	Cgt/Tgt																																																																														
CBL	0	MSKCC	GRCh37	11	119148465	119148465	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	34	535	0	ENST00000264033.4:c.1008-2A>T		p.X336_splice	ENST00000264033	NM_005188.3	336																																																																															
CHEK1	0	MSKCC	GRCh37	11	125499325	125499325	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	101	739	1	ENST00000428830.2:c.394A>T	p.Lys132Ter	p.K132*	ENST00000428830	NM_001114121.2	132	Aaa/Taa																																																																														
CHEK1	0	MSKCC	GRCh37	11	125514476	125514477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	53	604	0	ENST00000428830.2:c.1173dup	p.Cys392MetfsTer7	p.C392Mfs*7	ENST00000428830	NM_001114121.2	391	caa/cAaa																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856268	111856268	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	12	112	0	ENST00000341259.2:c.320del	p.Gly107AlafsTer90	p.G107Afs*90	ENST00000341259	NM_005475.2	107	Ggc/gc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121432208	121432208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	57	580	2	ENST00000257555.6:c.955G>A	p.Gly319Ser	p.G319S	ENST00000257555		319	Ggt/Agt																																																																														
SETD8	0	MSKCC	GRCh37	12	123889488	123889488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	27	207	0	ENST00000330479.4:c.715G>A	p.Gly239Ser	p.G239S	ENST00000330479	NM_020382.3	239	Ggt/Agt																																																																														
POLE	0	MSKCC	GRCh37	12	133226262	133226262	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	81	777	0	ENST00000320574.5:c.3795+1G>C		p.X1265_splice	ENST00000320574	NM_006231.2	1265																																																																															
FLT3	0	MSKCC	GRCh37	13	28592704	28592704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	76	738	1	ENST00000241453.7:c.2441C>T	p.Ala814Val	p.A814V	ENST00000241453	NM_004119.2	814	gCc/gTc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911178	32911178	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	162	688	0	ENST00000380152.3:c.2686A>G	p.Asn896Asp	p.N896D	ENST00000380152		896	Aat/Gat																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972625	32972626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	55	580	0	ENST00000380152.3:c.9981dup	p.Phe3328IlefsTer3	p.F3328Ifs*3	ENST00000380152		3325	-/A																																																																														
PRKD1	0	MSKCC	GRCh37	14	30102152	30102152	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	86	646	8	ENST00000331968.5:c.1315C>T	p.Arg439Trp	p.R439W	ENST00000331968	NM_002742.2	439	Cgg/Tgg																																																																														
GREM1	0	MSKCC	GRCh37	15	33023085	33023085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	40	464	1	ENST00000300177.4:c.194G>A	p.Gly65Asp	p.G65D	ENST00000300177	NM_001191322.1	65	gGc/gAc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43714237	43714237	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	75	862	2	ENST00000382044.4:c.3916del	p.Asp1306IlefsTer61	p.D1306Ifs*61	ENST00000382044	NM_001141980.1	1306	Gat/at																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43724684	43724684	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	74	777	0	ENST00000382044.4:c.3383A>T	p.Asp1128Val	p.D1128V	ENST00000382044	NM_001141980.1	1128	gAt/gTt																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66779571	66779571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	89	626	2	ENST00000307102.5:c.901G>A	p.Gly301Arg	p.G301R	ENST00000307102	NM_002755.3	301	Gga/Aga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778228	3778228	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	44	732	0	ENST00000262367.5:c.6820A>G	p.Met2274Val	p.M2274V	ENST00000262367	NM_004380.2	2274	Atg/Gtg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778549	3778549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	79	841	1	ENST00000262367.5:c.6499del	p.Gln2167ArgfsTer5	p.Q2167Rfs*5	ENST00000262367	NM_004380.2	2167	Cag/ag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3832823	3832823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	44	724	0	ENST00000262367.5:c.1435A>G	p.Ser479Gly	p.S479G	ENST00000262367	NM_004380.2	479	Agc/Ggc																																																																														
PALB2	0	MSKCC	GRCh37	16	23647310	23647310	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	109	827	1	ENST00000261584.4:c.557del	p.Asn186IlefsTer7	p.N186Ifs*7	ENST00000261584	NM_024675.3	186	aAt/at																																																																														
ANKRD11	29123	MSKCC	GRCh37	16	89346437	89346437	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	82	775	0	ENST00000301030.4:c.6513del	p.Val2173SerfsTer2	p.V2173Sfs*2	ENST00000301030	NM_001256183.1	2171	ccC/cc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347194	89347194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	51	604	3	ENST00000301030.4:c.5756C>T	p.Ala1919Val	p.A1919V	ENST00000301030	NM_001256183.1	1919	gCg/gTg																																																																														
FANCA	0	MSKCC	GRCh37	16	89839684	89839684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	66	596	1	ENST00000389301.3:c.2009G>A	p.Arg670His	p.R670H	ENST00000389301	NM_000135.2	670	cGt/cAt																																																																														
NF1	0	MSKCC	GRCh37	17	29664386	29664386	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	30	418	0	ENST00000358273.4:c.6428A>C	p.Glu2143Ala	p.E2143A	ENST00000358273	NM_001042492.2	2143	gAa/gCa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533883	63533884	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	73	653	0	ENST00000307078.5:c.1270_1271del	p.Ser424ProfsTer37	p.S424Pfs*37	ENST00000307078	NM_004655.3	424	TCc/c																																																																														
BCL2	0	MSKCC	GRCh37	18	60985628	60985628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	21	211	0	ENST00000333681.4:c.272C>A	p.Pro91His	p.P91H	ENST00000333681		91	cCt/cAt																																																																														
TCF3	0	MSKCC	GRCh37	19	1615719	1615719	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	65	965	0	ENST00000344749.5:c.1552A>G	p.Lys518Glu	p.K518E	ENST00000344749	NM_001136139.2	518	Aag/Gag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222478	2222478	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	87	695	0	ENST00000398665.3:c.3310T>A	p.Ser1104Thr	p.S1104T	ENST00000398665	NM_032482.2	1104	Tcc/Acc																																																																														
GNA11	0	MSKCC	GRCh37	19	3115009	3115009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	136	1073	0	ENST00000078429.4:c.544G>A	p.Val182Ile	p.V182I	ENST00000078429	NM_002067.2	182	Gtc/Atc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4110566	4110566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	83	788	1	ENST00000262948.5:c.391G>A	p.Val131Met	p.V131M	ENST00000262948	NM_030662.3	131	Gtg/Atg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244325	5244325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	96	898	0	ENST00000357368.4:c.1157G>A	p.Arg386His	p.R386H	ENST00000357368	NM_002850.3	386	cGt/cAt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10246485	10246485	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	81	776	1	ENST00000340748.4:c.4652G>T	p.Arg1551Leu	p.R1551L	ENST00000340748		1551	cGg/cTg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279666	18279666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	68	659	0	ENST00000222254.8:c.1939C>T	p.Arg647Cys	p.R647C	ENST00000222254	NM_005027.3	647	Cgc/Tgc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224111	36224111	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	61	673	2	ENST00000222270.7:c.6666del	p.Thr2223ProfsTer38	p.T2223Pfs*38	ENST00000222270	NM_014727.1	2221	Ccc/cc																																																																														
CIC	0	MSKCC	GRCh37	19	42795043	42795043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	29	888	3	ENST00000575354.2:c.2123G>T	p.Arg708Met	p.R708M	ENST00000575354	NM_015125.3	708	aGg/aTg																																																																														
POLD1	0	MSKCC	GRCh37	19	50905962	50905962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	89	851	0	ENST00000440232.2:c.934G>A	p.Val312Met	p.V312M	ENST00000440232	NM_002691.3	312	Gtg/Atg																																																																														
SOS1	0	MSKCC	GRCh37	2	39241108	39241108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	63	716	1	ENST00000402219.2:c.1963C>T	p.Pro655Ser	p.P655S	ENST00000402219	NM_005633.3	655	Cca/Tca																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419833	41419833	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	57	504	0	ENST00000373198.4:c.486+2T>C		p.X162_splice	ENST00000373198	NM_133170.3	162																																																																															
RTEL1	0	MSKCC	GRCh37	20	62319711	62319711	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	71	753	0	ENST00000508582.2:c.1766T>C	p.Val589Ala	p.V589A	ENST00000508582		589	gTc/gCc																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45655350	45655350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	129	963	0	ENST00000407780.3:c.502A>G	p.Asn168Asp	p.N168D	ENST00000407780	NM_001283052.1	168	Aac/Gac																																																																														
NF2	0	MSKCC	GRCh37	22	30038267	30038267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	91	593	0	ENST00000338641.4:c.440A>G	p.Gln147Arg	p.Q147R	ENST00000338641	NM_000268.3	147	cAg/cGg																																																																														
EP300	0	MSKCC	GRCh37	22	41527551	41527551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	80	665	1	ENST00000263253.7:c.1442C>T	p.Pro481Leu	p.P481L	ENST00000263253	NM_001429.3	481	cCg/cTg																																																																														
MLH1	0	MSKCC	GRCh37	3	37038201	37038201	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	38	324	0	ENST00000231790.2:c.207+1G>T		p.X69_splice	ENST00000231790	NM_000249.3	69																																																																															
MLH1	0	MSKCC	GRCh37	3	37070382	37070382	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	42	514	0	ENST00000231790.2:c.1520del	p.Leu507Ter	p.L507*	ENST00000231790	NM_000249.3	506	gTt/gt																																																																														
MLH1	0	MSKCC	GRCh37	3	37070413	37070413	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	40	430	0	ENST00000231790.2:c.1550del	p.Gly517AspfsTer18	p.G517Dfs*18	ENST00000231790	NM_000249.3	516	caG/ca																																																																														
RHOA	0	MSKCC	GRCh37	3	49397785	49397785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	99	819	0	ENST00000418115.1:c.439A>G	p.Met147Val	p.M147V	ENST00000418115	NM_001664.2	147	Atg/Gtg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52595860	52595860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	98	743	0	ENST00000394830.3:c.4055A>G	p.Tyr1352Cys	p.Y1352C	ENST00000394830	NM_018313.4	1352	tAc/tGc																																																																														
FAT1	0	MSKCC	GRCh37	4	187541907	187541907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	49	757	1	ENST00000441802.2:c.5833A>G	p.Arg1945Gly	p.R1945G	ENST00000441802	NM_005245.3	1945	Aga/Gga																																																																														
FAT1	0	MSKCC	GRCh37	4	187557989	187557989	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	47	559	0	ENST00000441802.2:c.3722A>G	p.Asn1241Ser	p.N1241S	ENST00000441802	NM_005245.3	1241	aAc/aGc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155687	56155687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	73	519	1	ENST00000399503.3:c.779G>A	p.Arg260His	p.R260H	ENST00000399503	NM_005921.1	260	cGc/cAc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67590975	67590975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	21	214	0	ENST00000274335.5:c.1569-1G>T		p.X523_splice	ENST00000274335		523																																																																															
MSH3	0	MSKCC	GRCh37	5	80057448	80057448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	73	657	0	ENST00000265081.6:c.1847G>A	p.Arg616His	p.R616H	ENST00000265081	NM_002439.4	616	cGt/cAt																																																																														
RAD50	0	MSKCC	GRCh37	5	131924462	131924462	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	40	625	0	ENST00000265335.6:c.1135G>T	p.Glu379Ter	p.E379*	ENST00000265335		379	Gaa/Taa																																																																														
RAD50	0	MSKCC	GRCh37	5	131977893	131977893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	42	560	0	ENST00000265335.6:c.3776A>G	p.Gln1259Arg	p.Q1259R	ENST00000265335		1259	cAg/cGg																																																																														
CSF1R	0	MSKCC	GRCh37	5	149452996	149452996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	37	661	0	ENST00000286301.3:c.950A>G	p.Glu317Gly	p.E317G	ENST00000286301	NM_005211.3	317	gAg/gGg																																																																														
FLT4	0	MSKCC	GRCh37	5	180056977	180056977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	60	942	0	ENST00000261937.6:c.642C>A	p.Asp214Glu	p.D214E	ENST00000261937	NM_182925.4	214	gaC/gaA																																																																														
IRF4	0	MSKCC	GRCh37	6	394872	394872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	40	621	0	ENST00000380956.4:c.268C>A	p.Pro90Thr	p.P90T	ENST00000380956	NM_001195286.1	90	Cct/Act																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910540	29910540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	24	696	0	ENST00000376809.5:c.80A>G	p.His27Arg	p.H27R	ENST00000376809	NM_002116.7	27	cAc/cGc																																																																														
HLA-A	0	MSKCC	GRCh37	6	29912306	29912308	+	frameshift_variant	Frame_Shift_Del	DEL	GTG	GTG	TT			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	68	757	1	ENST00000376809.5:c.925_927delinsTT	p.Val309LeufsTer13	p.V309Lfs*13	ENST00000376809	NM_002116.7	309	GTG/TT																																																																														
TAP1	0	MSKCC	GRCh37	6	32813523	32813523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	80	565	0	ENST00000354258.4:c.2260C>A	p.Arg754Ser	p.R754S	ENST00000354258	NM_000593.5	754	Cgc/Agc																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200101	138200101	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	36	539	0	ENST00000237289.4:c.1519A>G	p.Ser507Gly	p.S507G	ENST00000237289	NM_001270507.1	507	Agc/Ggc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522287	157522287	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	61	895	0	ENST00000346085.5:c.4559A>G	p.Gln1520Arg	p.Q1520R	ENST00000346085	NM_020732.3	1520	cAg/cGg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508352	106508352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	41	453	0	ENST00000359195.3:c.346G>A	p.Val116Met	p.V116M	ENST00000359195	NM_002649.2	116	Gtg/Atg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874148	151874148	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	55	769	1	ENST00000262189.6:c.8390A>G	p.Lys2797Arg	p.K2797R	ENST00000262189	NM_170606.2	2797	aAg/aGg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209583	98209583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	58	666	1	ENST00000331920.6:c.3955C>T	p.Arg1319Cys	p.R1319C	ENST00000331920	NM_000264.3	1319	Cgc/Tgc																																																																														
ABL1	0	MSKCC	GRCh37	9	133759592	133759592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	83	785	1	ENST00000318560.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000318560	NM_005157.4	639	Cga/Tga																																																																														
ABL1	0	MSKCC	GRCh37	9	133760343	133760344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	43	684	0	ENST00000318560.5:c.2670dup	p.Lys891GlufsTer49	p.K891Efs*49	ENST00000318560	NM_005157.4	889	aag/aaGg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391778	139391778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	68	689	1	ENST00000277541.6:c.6413C>T	p.Pro2138Leu	p.P2138L	ENST00000277541	NM_017617.3	2138	cCg/cTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401242	139401242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	118	800	0	ENST00000277541.6:c.3827G>A	p.Cys1276Tyr	p.C1276Y	ENST00000277541	NM_017617.3	1276	tGc/tAc																																																																														
AMER1	0	MSKCC	GRCh37	X	63411584	63411584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	27	868	0	ENST00000330258.3:c.1583T>C	p.Leu528Pro	p.L528P	ENST00000330258	NM_152424.3	528	cTc/cCc																																																																														
MED12	0	MSKCC	GRCh37	X	70339954	70339954	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	78	683	0	ENST00000374080.3:c.487A>G	p.Thr163Ala	p.T163A	ENST00000374080		163	Acc/Gcc																																																																														
MED12	0	MSKCC	GRCh37	X	70341551	70341551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	116	860	0	ENST00000374080.3:c.986C>A	p.Pro329His	p.P329H	ENST00000374080		329	cCc/cAc																																																																														
MED12	0	MSKCC	GRCh37	X	70361086	70361091	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	26	392	0	ENST00000374080.3:c.6285_6290del	p.Gln2114_Gln2115del	p.Q2114_Q2115del	ENST00000374080		2092	CAGCAA/-																																																																														
MED12	0	MSKCC	GRCh37	X	70361174	70361174	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	84	723	0	ENST00000374080.3:c.6362A>G	p.Gln2121Arg	p.Q2121R	ENST00000374080		2121	cAg/cGg																																																																														
BTK	0	MSKCC	GRCh37	X	100629549	100629549	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	81	865	0	ENST00000308731.7:c.215del	p.Asn72IlefsTer49	p.N72Ifs*49	ENST00000308731	NM_000061.2	72	aAt/at																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860039	152860041	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0020331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	48	612	0	ENST00000406277.2:c.387_389del	p.Leu130del	p.L130del	ENST00000406277	NM_152274.4	129	gtTCTg/gtg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097691	27097691	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	229	575	0	ENST00000324856.7:c.3280A>T	p.Lys1094Ter	p.K1094*	ENST00000324856	NM_006015.4	1094	Aag/Tag																																																																														
KDM5A	0	MSKCC	GRCh37	12	438158	438158	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	227	439	0	ENST00000399788.2:c.1811G>C	p.Arg604Pro	p.R604P	ENST00000399788	NM_001042603.1	604	cGc/cCc																																																																														
MGA	0	MSKCC	GRCh37	15	42042647	42042648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	194	497	0	ENST00000219905.7:c.6843dup	p.Gln2282ThrfsTer14	p.Q2282Tfs*14	ENST00000219905	NM_001164273.1	2281	ata/atAa																																																																														
ERCC4	0	MSKCC	GRCh37	16	14015940	14015940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	151	376	0	ENST00000311895.7:c.260G>A	p.Arg87His	p.R87H	ENST00000311895	NM_005236.2	87	cGt/cAt																																																																														
ERF	0	MSKCC	GRCh37	19	42752759	42752759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	240	609	1	ENST00000222329.4:c.1505G>T	p.Gly502Val	p.G502V	ENST00000222329	NM_006494.2	502	gGg/gTg																																																																														
IL7R	0	MSKCC	GRCh37	5	35876353	35876353	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	217	488	0	ENST00000303115.3:c.1145T>A	p.Leu382His	p.L382H	ENST00000303115	NM_002185.3	382	cTc/cAc																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271309	26271309	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	243	511	0	ENST00000305910.3:c.304G>C	p.Val102Leu	p.V102L	ENST00000305910	NM_003534.2	102	Gtg/Ctg																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	162	704	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	175	801	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	136	538	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88423511	88423511	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	99	709	0	ENST00000360948.2:c.2324C>G	p.Ser775Ter	p.S775*	ENST00000360948	NM_001012338.2	775	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0020335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	149	687	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584497	48584497	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0020335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	77	460	2	ENST00000342988.3:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000342988	NM_005359.5	224	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0020337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	125	567	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
RB1	0	MSKCC	GRCh37	13	48942685	48942685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	126	563	1	ENST00000267163.4:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000267163	NM_000321.2	358	Cga/Tga																																																																														
SRC	0	MSKCC	GRCh37	20	36012660	36012660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	15	261	0	ENST00000358208.4:c.104C>T	p.Ser35Leu	p.S35L	ENST00000358208		35	tCg/tTg																																																																														
CD276	0	MSKCC	GRCh37	15	73996161	73996161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	266	882	5	ENST00000318443.5:c.895G>A	p.Glu299Lys	p.E299K	ENST00000318443	NM_001024736.1	299	Gaa/Aaa																																																																														
UPF1	0	MSKCC	GRCh37	19	18976544	18976544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	222	933	0	ENST00000262803.5:c.3194C>T	p.Ser1065Phe	p.S1065F	ENST00000262803	NM_002911.3	1065	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	207	713	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	272	752	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911141	32911141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	32	424	0	ENST00000380152.3:c.2649C>A	p.Phe883Leu	p.F883L	ENST00000380152		883	ttC/ttA																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	192	573	0	ENST00000342988.3:c.1052A>G	p.Asp351Gly	p.D351G	ENST00000342988	NM_005359.5	351	gAt/gGt																																																																														
TET2	0	MSKCC	GRCh37	4	106197126	106197126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	20	416	0	ENST00000380013.4:c.5459G>A	p.Ser1820Asn	p.S1820N	ENST00000380013	NM_001127208.2	1820	aGt/aAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974800	21974801	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0020339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	82	265	0	ENST00000304494.5:c.25_26dup	p.Met9IlefsTer18	p.M9Ifs*18	ENST00000304494	NM_000077.4	9	atg/atATg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974800	21974801	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0020339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	82	265	0	ENST00000304494.5:c.25_26dup	p.Met9IlefsTer18	p.M9Ifs*18	ENST00000304494	NM_000077.4	9	atg/atATg																																																																														
TP53	0	MSKCC	GRCh37	17	7578259	7578259	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	217	923	0	ENST00000269305.4:c.590T>G	p.Val197Gly	p.V197G	ENST00000269305	NM_001126112.2	197	gTg/gGg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	29	375	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																																																														
CDH1	0	MSKCC	GRCh37	16	68855991	68855992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATTCTTCTGTGAGAGGA			P-0020344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	126	875	0	ENST00000261769.5:c.1802_1818dup	p.Pro607SerfsTer12	p.P607Sfs*12	ENST00000261769	NM_004360.3	600	ata/atATTCTTCTGTGAGAGGAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	244	1054	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
RASA1	0	MSKCC	GRCh37	5	86648999	86648999	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	85	564	0	ENST00000274376.6:c.1279C>T	p.Arg427Ter	p.R427*	ENST00000274376	NM_002890.2	427	Cga/Tga																																																																														
BAP1	0	MSKCC	GRCh37	3	52438541	52438541	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	202	920	0	ENST00000460680.1:c.1178del	p.Gln393ArgfsTer37	p.Q393Rfs*37	ENST00000460680	NM_004656.3	393	cAg/cg																																																																														
TSC1	0	MSKCC	GRCh37	9	135797244	135797248	+	frameshift_variant	Frame_Shift_Del	DEL	TACTG	TACTG	-			P-0020345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	51	418	0	ENST00000298552.3:c.621_625del	p.Ser208GlufsTer8	p.S208Efs*8	ENST00000298552	NM_001162426.1	207	taCAGTAtg/tatg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	131	703	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	119	809	7	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71247411	71247411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	140	694	1	ENST00000318789.4:c.122C>T	p.Thr41Met	p.T41M	ENST00000318789	NM_032682.5	41	aCg/aTg																																																																														
STK11	0	MSKCC	GRCh37	19	1220505	1220505	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	100	783	0	ENST00000326873.7:c.597+1G>T		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																															
TP53	0	MSKCC	GRCh37	17	7578523	7578523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	320	1192	0	ENST00000269305.4:c.407A>C	p.Gln136Pro	p.Q136P	ENST00000269305	NM_001126112.2	136	cAa/cCa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	32	404	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	93	531	0	ENST00000371953.3:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000371953	NM_000314.4	92	Gac/Tac																																																																														
INPPL1	0	MSKCC	GRCh37	11	71945628	71945643	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTGCAGTGGTCTTC	AAGTGCAGTGGTCTTC	-			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	128	854	0	ENST00000298229.2:c.2385_2400del	p.Lys795AsnfsTer45	p.K795Nfs*45	ENST00000298229	NM_001567.3	795	aAAGTGCAGTGGTCTTCa/aa																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871640	35871640	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	62	575	0	ENST00000216797.5:c.866A>G	p.Tyr289Cys	p.Y289C	ENST00000216797	NM_020529.2	289	tAt/tGt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554509	63554509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	49	768	1	ENST00000307078.5:c.230G>A	p.Arg77Gln	p.R77Q	ENST00000307078	NM_004655.3	77	cGg/cAg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228622	36228622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	116	1081	3	ENST00000222270.7:c.7636G>A	p.Glu2546Lys	p.E2546K	ENST00000222270	NM_014727.1	2546	Gag/Aag																																																																														
SDHA	0	MSKCC	GRCh37	5	228310	228310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	71	296	0	ENST00000264932.6:c.632A>G	p.Tyr211Cys	p.Y211C	ENST00000264932	NM_004168.2	211	tAt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0020349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	171	794	0				ENST00000310581	NM_198253.2																																																																																
KMT2D	0	MSKCC	GRCh37	12	49426181	49426181	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	189	806	1	ENST00000301067.7:c.12307C>T	p.Gln4103Ter	p.Q4103*	ENST00000301067	NM_003482.3	4103	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	221	519	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	0	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	48	589	0	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101054	27101054	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	255	670	0	ENST00000324856.7:c.4336C>T	p.Arg1446Ter	p.R1446*	ENST00000324856	NM_006015.4	1446	Cga/Tga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32972596	32972596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	124	386	0	ENST00000380152.3:c.9946G>C	p.Glu3316Gln	p.E3316Q	ENST00000380152		3316	Gaa/Caa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	209	592	1	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																																																														
TSC1	0	MSKCC	GRCh37	9	135796754	135796754	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	105	357	0	ENST00000298552.3:c.733C>T	p.Arg245Ter	p.R245*	ENST00000298552	NM_001162426.1	245	Cga/Tga																																																																														
NCOR1	0	MSKCC	GRCh37	17	15976770	15976770	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	84	785	0	ENST00000268712.3:c.3784G>T	p.Glu1262Ter	p.E1262*	ENST00000268712	NM_006311.3	1262	Gag/Tag																																																																														
DICER1	0	MSKCC	GRCh37	14	95584000	95584000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	74	524	0	ENST00000343455.3:c.1468C>T	p.Arg490Cys	p.R490C	ENST00000343455	NM_177438.2	490	Cgc/Tgc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652242	36652242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	135	642	1	ENST00000244741.5:c.364C>T	p.Arg122Cys	p.R122C	ENST00000244741	NM_000389.4	122	Cgc/Tgc																																																																														
TBX3	0	MSKCC	GRCh37	12	115117319	115117319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	142	397	0	ENST00000257566.3:c.855G>C	p.Gln285His	p.Q285H	ENST00000257566	NM_016569.3	285	caG/caC																																																																														
ATM	0	MSKCC	GRCh37	11	108143332	108143332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	105	430	0	ENST00000278616.4:c.3151G>C	p.Glu1051Gln	p.E1051Q	ENST00000278616	NM_000051.3	1051	Gag/Cag																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727494	66727494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	58	452	0	ENST00000307102.5:c.210G>C	p.Lys70Asn	p.K70N	ENST00000307102	NM_002755.3	70	aaG/aaC																																																																														
STAT5B	0	MSKCC	GRCh37	17	40379580	40379580	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	124	777	0	ENST00000293328.3:c.252G>C	p.Lys84Asn	p.K84N	ENST00000293328	NM_012448.3	84	aaG/aaC																																																																														
NCOA3	0	MSKCC	GRCh37	20	46251035	46251035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	44	481	0	ENST00000371998.3:c.44C>T	p.Ser15Leu	p.S15L	ENST00000371998		15	tCa/tTa																																																																														
ATR	0	MSKCC	GRCh37	3	142177823	142177823	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	95	360	0	ENST00000350721.4:c.7480G>C	p.Asp2494His	p.D2494H	ENST00000350721	NM_001184.3	2494	Gat/Cat																																																																														
ATM	0	MSKCC	GRCh37	11	108114749	108114749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	231	829	0	ENST00000278616.4:c.566G>C	p.Arg189Thr	p.R189T	ENST00000278616	NM_000051.3	189	aGa/aCa																																																																														
ARAF	0	MSKCC	GRCh37	X	47428238	47428238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	230	1011	0	ENST00000377045.4:c.1198C>A	p.Arg400Ser	p.R400S	ENST00000377045	NM_001654.4	400	Cgc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7578505	7578506	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0020354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	340	1294	0	ENST00000269305.4:c.424_425del	p.Pro142CysfsTer6	p.P142Cfs*6	ENST00000269305	NM_001126112.2	142	CCt/t																																																																														
MTOR	0	MSKCC	GRCh37	1	11294228	11294228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	42	875	0	ENST00000361445.4:c.2303T>C	p.Ile768Thr	p.I768T	ENST00000361445	NM_004958.3	768	aTc/aCc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843461	156843471	+	frameshift_variant	Frame_Shift_Del	DEL	TGCACCACTGG	TGCACCACTGG	-			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	74	782	0	ENST00000524377.1:c.891_901del	p.His298ProfsTer23	p.H298Pfs*23	ENST00000524377	NM_002529.3	296	aTGCACCACTGG/a																																																																														
TP53	0	MSKCC	GRCh37	17	7576960	7577127	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTC	AATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTC	-			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	55	743	0	ENST00000269305.4:c.811_920-34del		p.X271_splice	ENST00000269305	NM_001126112.2	271																																																																															
MST1R	0	MSKCC	GRCh37	3	49939856	49939856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	47	964	3	ENST00000296474.3:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000296474	NM_002447.2	396	cGa/cAa																																																																														
WWTR1	0	MSKCC	GRCh37	3	149374959	149374960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	162	1127	0	ENST00000360632.3:c.134dup	p.Lys46GlufsTer9	p.K46Efs*9	ENST00000360632	NM_015472.4	45	aag/aaAg																																																																														
FAT1	0	MSKCC	GRCh37	4	187530954	187530954	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	32	581	0	ENST00000441802.2:c.10068+1G>A		p.X3356_splice	ENST00000441802	NM_005245.3	3356																																																																															
TERT	0	MSKCC	GRCh37	5	1294709	1294709	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	38	784	0	ENST00000310581.5:c.292G>C	p.Ala98Pro	p.A98P	ENST00000310581	NM_198253.2	98	Gcc/Ccc																																																																														
APC	0	MSKCC	GRCh37	5	112173513	112173513	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	15	488	0	ENST00000257430.4:c.2222A>C	p.Asn741Thr	p.N741T	ENST00000257430	NM_000038.5	741	aAt/aCt																																																																														
MDC1	0	MSKCC	GRCh37	6	30671444	30671444	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	58	940	0	ENST00000376406.3:c.5516T>C	p.Ile1839Thr	p.I1839T	ENST00000376406	NM_014641.2	1839	aTc/aCc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32171953	32171953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	80	631	2	ENST00000375023.3:c.3079G>A	p.Ala1027Thr	p.A1027T	ENST00000375023	NM_004557.3	1027	Gcc/Acc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390845	139390845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	101	1101	2	ENST00000277541.6:c.7346G>T	p.Ser2449Ile	p.S2449I	ENST00000277541	NM_017617.3	2449	aGc/aTc																																																																														
AR	0	MSKCC	GRCh37	X	66766539	66766540	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	40	551	0	ENST00000374690.3:c.1552_1553del	p.Thr518LeufsTer12	p.T518Lfs*12	ENST00000374690	NM_000044.3	517	ccCAct/ccct																																																																														
MED12	0	MSKCC	GRCh37	X	70348200	70348216	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTGCAGAATGGCTAG	GAGTGCAGAATGGCTAG	-			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	35	470	0	ENST00000374080.3:c.3270_3286del	p.Glu1091Ter	p.E1091*	ENST00000374080		1088	ctGAGTGCAGAATGGCTAGga/ctga																																																																														
MED12	0	MSKCC	GRCh37	X	70357190	70357190	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	27	385	0	ENST00000374080.3:c.5705A>G	p.Gln1902Arg	p.Q1902R	ENST00000374080		1902	cAa/cGa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153250869	153250874	+	frameshift_variant	Frame_Shift_Del	DEL	ACCACT	ACCACT	C			P-0020355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	32	655	0	ENST00000281708.4:c.1186_1191delinsG	p.Ser396ValfsTer2	p.S396Vfs*2	ENST00000281708	NM_033632.3	396	AGTGGT/G																																																																														
PTEN	0	MSKCC	GRCh37	10	89692929	89692929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	80	783	0	ENST00000371953.3:c.413A>G	p.Tyr138Cys	p.Y138C	ENST00000371953	NM_000314.4	138	tAt/tGt																																																																														
ARID2	0	MSKCC	GRCh37	12	46125088	46125088	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	35	333	0	ENST00000334344.6:c.275A>G	p.Tyr92Cys	p.Y92C	ENST00000334344	NM_152641.2	92	tAt/tGt																																																																														
MGA	0	MSKCC	GRCh37	15	42028443	42028443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	45	547	0	ENST00000219905.7:c.3981G>T	p.Arg1327Ser	p.R1327S	ENST00000219905	NM_001164273.1	1327	agG/agT																																																																														
VHL	0	MSKCC	GRCh37	3	10191560	10191560	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	140	678	0	ENST00000256474.2:c.553del	p.Tyr185ThrfsTer17	p.Y185Tfs*17	ENST00000256474	NM_000551.3	185	Tac/ac																																																																														
SETD2	0	MSKCC	GRCh37	3	47163607	47163607	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	31	538	0	ENST00000409792.3:c.2519del	p.Asn840IlefsTer2	p.N840Ifs*2	ENST00000409792	NM_014159.6	840	aAt/at																																																																														
BAP1	0	MSKCC	GRCh37	3	52436409	52436412	+	frameshift_variant	Frame_Shift_Del	DEL	GTTC	GTTC	-			P-0020357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	145	845	0	ENST00000460680.1:c.2082_2085del	p.Asn695SerfsTer40	p.N695Sfs*40	ENST00000460680	NM_004656.3	694	caGAAC/ca																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185198031	185198031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	38	504	0	ENST00000265026.3:c.2513G>A	p.Cys838Tyr	p.C838Y	ENST00000265026	NM_004721.4	838	tGt/tAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	767	922	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	216	663	3				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0020359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	352	980	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MDM2	0	MSKCC	GRCh37	12	69202261	69202261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	245	636	0	ENST00000462284.1:c.4G>T	p.Val2Leu	p.V2L	ENST00000462284	NM_002392.5	2	Gtg/Ttg																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15809122	15809142	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACTGAGAGACTCAGGTGATG	GACTGAGAGACTCAGGTGATG	-			P-0020359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	89	338	0	ENST00000307771.7:c.111_121+10del		p.X37_splice	ENST00000307771	NM_005089.3	37																																																																															
VHL	0	MSKCC	GRCh37	3	10183817	10183817	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	219	887	0	ENST00000256474.2:c.286C>T	p.Gln96Ter	p.Q96*	ENST00000256474	NM_000551.3	96	Cag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47127800	47127800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	92	536	0	ENST00000409792.3:c.5282C>G	p.Thr1761Arg	p.T1761R	ENST00000409792	NM_014159.6	1761	aCa/aGa																																																																														
BAP1	0	MSKCC	GRCh37	3	52439853	52439861	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTGGACT	ACTTGGACT	G			P-0020362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	98	814	0	ENST00000460680.1:c.851_859delinsC	p.Glu284AlafsTer20	p.E284Afs*20	ENST00000460680	NM_004656.3	284	gAGTCCAAGTca/gCca																																																																														
TP53	0	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	506	870	0	ENST00000269305.4:c.518T>G	p.Val173Gly	p.V173G	ENST00000269305	NM_001126112.2	173	gTg/gGg																																																																														
TMEM127	0	MSKCC	GRCh37	2	96920691	96920691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	71	644	0	ENST00000258439.3:c.289G>A	p.Ala97Thr	p.A97T	ENST00000258439	NM_001193304.2	97	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	392	925	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	104	623	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TSC2	0	MSKCC	GRCh37	16	2130180	2130180	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1048	209	884	1	ENST00000219476.3:c.3412C>T	p.Arg1138Ter	p.R1138*	ENST00000219476	NM_000548.3	1138	Cga/Tga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	300	785	1	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49441800	49441802	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	175	854	0	ENST00000301067.7:c.4182_4184del	p.Leu1395del	p.L1395del	ENST00000301067	NM_003482.3	1394	ctCCTt/ctt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913482	32913482	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	249	771	0	ENST00000380152.3:c.4990A>T	p.Ile1664Phe	p.I1664F	ENST00000380152		1664	Att/Ttt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103510585	103510624	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GAAATGTAAATTTCATGGTGCTGTGATTTTATCTTTACAG	GAAATGTAAATTTCATGGTGCTGTGATTTTATCTTTACAG	-			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	41	272	0	ENST00000355739.4:c.529-37_531del		p.X177_splice	ENST00000355739	NM_000123.3	177																																																																															
APC	0	MSKCC	GRCh37	5	112175417	112175417	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	77	435	0	ENST00000257430.4:c.4126del	p.Tyr1376MetfsTer39	p.Y1376Mfs*39	ENST00000257430	NM_000038.5	1376	Tat/at																																																																														
ATRX	0	MSKCC	GRCh37	X	76907680	76907680	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	155	910	0	ENST00000373344.5:c.4481A>C	p.Gln1494Pro	p.Q1494P	ENST00000373344	NM_000489.3	1494	cAa/cCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	47	827	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577497	7577497	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0020377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	120	766	0	ENST00000269305.4:c.782+2T>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	355	740	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	119	621	2	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	152	796	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	32	455	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	21	484	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	12	482	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	114	669	8	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
MTOR	0	MSKCC	GRCh37	1	11217234	11217234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	178	839	0	ENST00000361445.4:c.4444C>T	p.Arg1482Cys	p.R1482C	ENST00000361445	NM_004958.3	1482	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	139	907	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
SESN2	0	MSKCC	GRCh37	1	28598940	28598940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	239	892	1	ENST00000253063.3:c.500C>T	p.Ala167Val	p.A167V	ENST00000253063	NM_031459.4	167	gCg/gTg																																																																														
ID3	0	MSKCC	GRCh37	1	23885746	23885746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	209	896	1	ENST00000374561.5:c.172G>A	p.Val58Ile	p.V58I	ENST00000374561	NM_002167.4	58	Gtc/Atc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101611	27101612	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	251	1085	0	ENST00000324856.7:c.4899dupC	p.Met1634HisfsTer14	p.M1634Hfs*14	ENST00000324856	NM_006015.4	1631	-/C																																																																														
BLM	0	MSKCC	GRCh37	15	91346871	91346871	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	29	707	0	ENST00000355112.3:c.3479A>G	p.Tyr1160Cys	p.Y1160C	ENST00000355112	NM_000057.2	1160	tAt/tGt																																																																														
SLX4	0	MSKCC	GRCh37	16	3645616	3645616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	85	919	0	ENST00000294008.3:c.2003G>A	p.Gly668Asp	p.G668D	ENST00000294008	NM_032444.2	668	gGc/gAc																																																																														
CTCF	0	MSKCC	GRCh37	16	67660472	67660472	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	32	598	0	ENST00000264010.4:c.1372A>T	p.Lys458Ter	p.K458*	ENST00000264010	NM_006565.3	458	Aag/Tag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211357	36211358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	208	936	1	ENST00000222270.7:c.1110dup	p.Glu371ArgfsTer18	p.E371Rfs*18	ENST00000222270	NM_014727.1	370	gaa/gAaa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56152518	56152518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	83	390	0	ENST00000399503.3:c.574A>G	p.Thr192Ala	p.T192A	ENST00000399503	NM_005921.1	192	Acc/Gcc																																																																														
RASA1	0	MSKCC	GRCh37	5	86686625	86686626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	83	444	0	ENST00000274376.6:c.3074dup	p.Leu1026AlafsTer20	p.L1026Afs*20	ENST00000274376	NM_002890.2	1023	-/A																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874012	151874013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	186	714	0	ENST00000262189.6:c.8525dup	p.Asn2842LysfsTer2	p.N2842Kfs*2	ENST00000262189	NM_170606.2	2842	aat/aaAt																																																																														
PREX2	0	MSKCC	GRCh37	8	69028034	69028034	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	176	882	0	ENST00000288368.4:c.3193del	p.Ser1065GlnfsTer4	p.S1065Qfs*4	ENST00000288368	NM_024870.2	1065	Tca/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	105	980	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	87	978	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
AXL	0	MSKCC	GRCh37	19	41737136	41737136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	139	1279	1	ENST00000301178.4:c.716C>T	p.Thr239Met	p.T239M	ENST00000301178	NM_021913.4	239	aCg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112137036	112137036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	57	698	0	ENST00000257430.4:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000257430	NM_000038.5	264	Caa/Taa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8331723	8331723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	95	575	1	ENST00000356435.5:c.5393G>A	p.Arg1798Gln	p.R1798Q	ENST00000356435		1798	cGa/cAa																																																																														
TBX3	0	MSKCC	GRCh37	12	115112253	115112253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	96	454	0	ENST00000257566.3:c.1487G>A	p.Gly496Asp	p.G496D	ENST00000257566	NM_016569.3	496	gGc/gAc																																																																														
PTPN11	0	MSKCC	GRCh37	12	112924295	112924295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	70	1069	2	ENST00000351677.2:c.1241C>T	p.Thr414Met	p.T414M	ENST00000351677	NM_002834.3	414	aCg/aTg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981538	201981538	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	158	1338	1	ENST00000359651.3:c.452A>G	p.Gln151Arg	p.Q151R	ENST00000359651		151	cAg/cGg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112248	115112248	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	95	509	1	ENST00000257566.3:c.1492del	p.Leu498CysfsTer134	p.L498Cfs*134	ENST00000257566	NM_016569.3	498	Ctg/tg																																																																														
AMER1	0	MSKCC	GRCh37	X	63410598	63410598	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	110	1152	0	ENST00000330258.3:c.2569C>T	p.Arg857Ter	p.R857*	ENST00000330258	NM_152424.3	857	Cga/Tga																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0020385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	41	707	7	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
SMAD3	0	MSKCC	GRCh37	15	67358677	67358677	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	82	678	8	ENST00000327367.4:c.185C>G	p.Thr62Ser	p.T62S	ENST00000327367	NM_005902.3	62	aCc/aGc																																																																														
TSC2	0	MSKCC	GRCh37	16	2121933	2121933	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0020385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	118	1076	5	ENST00000219476.3:c.2095C>A	p.Gln699Lys	p.Q699K	ENST00000219476	NM_000548.3	699	Cag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577523	7577524	+	missense_variant	Missense_Mutation	DNP	GT	GT	TC			P-0020385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	205	1009	17	ENST00000269305.4:c.757_758delinsGA	p.Thr253Asp	p.T253D	ENST00000269305	NM_001126112.2	253	ACc/GAc																																																																														
CDK12	0	MSKCC	GRCh37	17	37650879	37650880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	55	868	16	ENST00000447079.4:c.2353dup	p.Ser785LysfsTer4	p.S785Kfs*4	ENST00000447079	NM_015083.1	784	cga/cgAa																																																																														
STAT5A	0	MSKCC	GRCh37	17	40461482	40461484	+	inframe_deletion	In_Frame_Del	DEL	CTA	CTA	-			P-0020385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	85	1163	6	ENST00000345506.4:c.2202_2204del	p.Tyr735del	p.Y735del	ENST00000345506	NM_003152.3	734	ccCTAt/cct																																																																														
RASA1	0	MSKCC	GRCh37	5	86564270	86564270	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0020385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	27	327	4	ENST00000274376.6:c.2T>G	p.Met1?	p.M1?	ENST00000274376	NM_002890.2	1	aTg/aGg																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158404	26158404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	87	1259	3	ENST00000289316.2:c.7G>C	p.Glu3Gln	p.E3Q	ENST00000289316	NM_138720.2	3	Gaa/Caa																																																																														
KIT	0	MSKCC	GRCh37	4	55593584	55593598	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACCCATGTATGAAGT	ACCCATGTATGAAGT	-			P-0020389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	344	434	0	ENST00000288135.5:c.1652_1666del	p.Pro551_Val555del	p.P551_V555del	ENST00000288135	NM_000222.2	550	aaACCCATGTATGAAGTa/aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	324	593	0				ENST00000310581	NM_198253.2																																																																																
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	387	645	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
RIT1	0	MSKCC	GRCh37	1	155874101	155874101	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	176	534	0	ENST00000368323.3:c.429+1G>T		p.X143_splice	ENST00000368323	NM_006912.5	143																																																																															
NTRK1	0	MSKCC	GRCh37	1	156851258	156851258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	229	695	0	ENST00000524377.1:c.2215T>C	p.Cys739Arg	p.C739R	ENST00000524377	NM_002529.3	739	Tgc/Cgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416440	49416441	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0020394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	410	657	0	ENST00000301067.7:c.16270_16271del	p.Ile5424ArgfsTer34	p.I5424Rfs*34	ENST00000301067	NM_003482.3	5424	ATc/c																																																																														
TP53	0	MSKCC	GRCh37	17	7578502	7578511	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGGGCAGG	ACAGGGCAGG	-			P-0020394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	659	1039	0	ENST00000269305.4:c.419_428del	p.Thr140SerfsTer27	p.T140Sfs*27	ENST00000269305	NM_001126112.2	140	aCCTGCCCTGTg/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	223	1066	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0020395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	226	1363	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839952	27839952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	68	1006	0	ENST00000328488.2:c.142G>A	p.Ala48Thr	p.A48T	ENST00000328488	NM_003533.2	48	Gcc/Acc																																																																														
RECQL	0	MSKCC	GRCh37	12	21627858	21627858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	143	1255	0	ENST00000421138.2:c.1272C>G	p.Phe424Leu	p.F424L	ENST00000421138		424	ttC/ttG																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715625	30715625	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	64	466	0	ENST00000359013.4:c.1358A>T	p.Glu453Val	p.E453V	ENST00000359013	NM_001024847.2	453	gAa/gTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	716	649	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81972434	81972434	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	564	449	1	ENST00000359376.3:c.3227T>A	p.Leu1076His	p.L1076H	ENST00000359376	NM_002661.3	1076	cTt/cAt																																																																														
SYK	0	MSKCC	GRCh37	9	93624493	93624493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	62	340	0	ENST00000375746.1:c.584G>A	p.Arg195Gln	p.R195Q	ENST00000375746	NM_001174167.1	195	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	146	463	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	16	765	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0020402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	307	1191	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
PTEN	0	MSKCC	GRCh37	10	89720833	89720836	+	frameshift_variant	Frame_Shift_Del	DEL	AAAT	AAAT	-			P-0020403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	264	498	0	ENST00000371953.3:c.987_990delTAAA	p.Asn329LysfsTer14	p.N329Kfs*14	ENST00000371953	NM_000314.4	328	gcAAAT/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	260	701	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	212	442	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89624227	89624234	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	ATGACAGC	ATGACAGC	CTGA			P-0020403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	106	209	1	ENST00000371953.3:c.1_8delinsCTGA	p.Met1_?3	p.M1_?3	ENST00000371953	NM_000314.4	1	ATGACAGCc/CTGAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433689	49433689	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	554	1030	2	ENST00000301067.7:c.7864del	p.Asp2622ThrfsTer69	p.D2622Tfs*69	ENST00000301067	NM_003482.3	2622	Gac/ac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828953	72828954	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAAATGA			P-0020403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	334	751	2	ENST00000268489.5:c.7621_7627dup	p.Glu2543ValfsTer3	p.E2543Vfs*3	ENST00000268489	NM_006885.3	2543	gag/gTCATTTGag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581189	48581189	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	266	592	0	ENST00000342988.3:c.493G>C	p.Asp165His	p.D165H	ENST00000342988	NM_005359.5	165	Gac/Cac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465600	8465600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	337	725	5	ENST00000356435.5:c.3580G>A	p.Ala1194Thr	p.A1194T	ENST00000356435		1194	Gct/Act																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	62	300	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	79	470	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	1711	497	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120459021	120459022	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	1037	731	4	ENST00000256646.2:c.6323_6324delinsTT	p.Ala2108Val	p.A2108V	ENST00000256646	NM_024408.3	2108	gCC/gTT																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741733	17741733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	451	755	2	ENST00000250003.3:c.404G>T	p.Cys135Phe	p.C135F	ENST00000250003	NM_002478.4	135	tGc/tTc																																																																														
TSHR	0	MSKCC	GRCh37	14	81609622	81609622	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	241	625	2	ENST00000298171.2:c.1220C>A	p.Pro407Gln	p.P407Q	ENST00000298171	NM_000369.2	407	cCg/cAg																																																																														
IDH2	0	MSKCC	GRCh37	15	90634877	90634877	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	311	551	1	ENST00000330062.3:c.116-1G>A		p.X39_splice	ENST00000330062	NM_002168.2	39																																																																															
MAP2K4	0	MSKCC	GRCh37	17	11924238	11924238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	75	71	0	ENST00000353533.5:c.35C>T	p.Ser12Phe	p.S12F	ENST00000353533	NM_003010.3	12	tCc/tTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144161	11144161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	472	758	0	ENST00000344626.4:c.3742C>T	p.Gln1248Ter	p.Q1248*	ENST00000344626	NM_003072.3	1248	Cag/Tag																																																																														
IRS1	0	MSKCC	GRCh37	2	227659994	227659995	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0020406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	229	646	1	ENST00000305123.5:c.3460_3461delinsT	p.Gly1154TrpfsTer27	p.G1154Wfs*27	ENST00000305123	NM_005544.2	1154	GGg/Tg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	58	839	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032604	12032604	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	40	680	0	ENST00000353533.5:c.1040G>A	p.Cys347Tyr	p.C347Y	ENST00000353533	NM_003010.3	347	tGc/tAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591928	48591928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	45	564	0	ENST00000342988.3:c.1091T>C	p.Leu364Ser	p.L364S	ENST00000342988	NM_005359.5	364	tTg/tCg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807872	1807872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1244	87	1035	0	ENST00000260795.2:c.1931A>G	p.Asn644Ser	p.N644S	ENST00000260795		644	aAc/aGc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716208	52716208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	74	758	0	ENST00000322088.6:c.652G>A	p.Asp218Asn	p.D218N	ENST00000322088	NM_014225.5	218	Gac/Aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	55	662	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SETD2	0	MSKCC	GRCh37	3	47079266	47079266	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0020413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	54	544	1	ENST00000409792.3:c.7240C>T	p.Gln2414Ter	p.Q2414*	ENST00000409792	NM_014159.6	2414	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	98	734	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	93	616	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604770	48604770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	83	477	0	ENST00000342988.3:c.1594delG	p.Ala532ProfsTer5	p.A532Pfs*5	ENST00000342988	NM_005359.5	531	cGg/cg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228164	36228164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	141	827	2	ENST00000222270.7:c.7550G>A	p.Arg2517Gln	p.R2517Q	ENST00000222270	NM_014727.1	2517	cGg/cAg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480306	89480306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	49	247	0	ENST00000336596.2:c.2143G>A	p.Asp715Asn	p.D715N	ENST00000336596	NM_005233.5	715	Gat/Aat																																																																														
APC	0	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	56	403	1	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	41	259	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
ATM	0	MSKCC	GRCh37	11	108236173	108236173	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	245	732	0	ENST00000278616.4:c.9109C>T	p.Gln3037Ter	p.Q3037*	ENST00000278616	NM_000051.3	3037	Cag/Tag																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31387093	31387093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	158	784	0	ENST00000328111.2:c.1718G>T	p.Arg573Leu	p.R573L	ENST00000328111	NM_006892.3	573	cGg/cTg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31508783	31508783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	322	781	1	ENST00000344624.3:c.1532A>G	p.Lys511Arg	p.K511R	ENST00000344624		511	aAa/aGa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589012	67589116	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATACTCTTACACTAAGGTAAGCCAGGGAATATAGCTGAAATTAGGGTTTTGGGCTGATATTAAAACATATTTCCTTATTCCAAAATGTTAATACCTTTATTTTTA	ATACTCTTACACTAAGGTAAGCCAGGGAATATAGCTGAAATTAGGGTTTTGGGCTGATATTAAAACATATTTCCTTATTCCAAAATGTTAATACCTTTATTTTTA	-			P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	55	331	2	ENST00000274335.5:c.1103_1119-15del		p.X368_splice	ENST00000274335		368																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67589171	67589171	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	20	375	0	ENST00000274335.5:c.1159G>C	p.Asp387His	p.D387H	ENST00000274335		387	Gat/Cat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	369	845	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118307529	118307529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	269	1095	1	ENST00000534358.1:c.302C>T	p.Ser101Leu	p.S101L	ENST00000534358	NM_005933.3	101	tCa/tTa																																																																														
RB1	0	MSKCC	GRCh37	13	48916645	48916762	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGAAAAAATCAGTTATAATACAGTTTTAACATAGTATCCAGTGTGTGAATTATTTAATGAAATATTTGATCTTTATTTTTTGTTCCCAGGGAGGTTATATTCAAAAGAAAAAGGAAC	AAGAAAAAATCAGTTATAATACAGTTTTAACATAGTATCCAGTGTGTGAATTATTTAATGAAATATTTGATCTTTATTTTTTGTTCCCAGGGAGGTTATATTCAAAAGAAAAAGGAAC	-			P-0020424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	133	89	1	ENST00000267163.4:c.265-90_292del		p.X89_splice	ENST00000267163	NM_000321.2	89																																																																															
KMT2B	0	MSKCC	GRCh37	19	36223646	36223646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	461	1112	4	ENST00000222270.7:c.6196G>T	p.Asp2066Tyr	p.D2066Y	ENST00000222270	NM_014727.1	2066	Gac/Tac																																																																														
ATRX	0	MSKCC	GRCh37	X	76953104	76953977	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCTGAAGAGCTAGTTCCCTAGATGTGAGACATAAATATAAAAGTGAATAAAATTCTCGAAACGGCATCCCTACAATTAGCTATTTCCCTATAGCAACTTCAATACAGTGATATAATGAGATGCTATTTATGTGCCTAGAATATTTTTCTAAAAGGAACTTCAAAAACTAATTCTCTACCACATAAGGAACACAGATGCAAAAAAATAAAAATTAAAACTAATTCTCATTTACTGCCAGGTTTCCTTGGCTGAAGATTAAATTTCTCGTTTTTTACATGGTTGCTGTGGCATGCTGCGGGGAATACACTGCTGCAAAATGATCATGGCCCCAGTCAACAAAGACAAAACAAAGATGCAGAAGTAATCAGATCTCAAGAGAAGTAGGGAGTTTCAAGGATCTAAATATGTTTCATTCTTCTCTAAGCTAACATATGGCATGAAGTAACTTCTACAACTTGCTTTGAGATACTAAACTTACCCTCATTTTGCCAGTATAATCAATATATTTTACTGGATTCAGTTTTTTTTTACAGTAGGTCAAAAAATTCCCAAAACCACAGTTGTGGACCTGTGTATCAGGCAAAGGACCTTGTTATGAGTTGCTATAATAATGCTTAGCAGACTCTAGATACCAAGTTTTGAGAGATTTCACAACCATGGAGTTCATGCCCTTAACATCCACCTCAAACACCTTTGGGGCAATATAAAGACAGTTTAATATCTATCTGTTGGAAGTCTTCAGTTGTCTGACTTTAGGTAAACCACTGAAGTGAACCACAACAATAACAGAAACAATGAACACCTGTTCTCAAACTGGAAAACAACGAAACTGAAGTATAATGACAACTGGGTATCAGTAGCCTTCGACACA	TTTTCTGAAGAGCTAGTTCCCTAGATGTGAGACATAAATATAAAAGTGAATAAAATTCTCGAAACGGCATCCCTACAATTAGCTATTTCCCTATAGCAACTTCAATACAGTGATATAATGAGATGCTATTTATGTGCCTAGAATATTTTTCTAAAAGGAACTTCAAAAACTAATTCTCTACCACATAAGGAACACAGATGCAAAAAAATAAAAATTAAAACTAATTCTCATTTACTGCCAGGTTTCCTTGGCTGAAGATTAAATTTCTCGTTTTTTACATGGTTGCTGTGGCATGCTGCGGGGAATACACTGCTGCAAAATGATCATGGCCCCAGTCAACAAAGACAAAACAAAGATGCAGAAGTAATCAGATCTCAAGAGAAGTAGGGAGTTTCAAGGATCTAAATATGTTTCATTCTTCTCTAAGCTAACATATGGCATGAAGTAACTTCTACAACTTGCTTTGAGATACTAAACTTACCCTCATTTTGCCAGTATAATCAATATATTTTACTGGATTCAGTTTTTTTTTACAGTAGGTCAAAAAATTCCCAAAACCACAGTTGTGGACCTGTGTATCAGGCAAAGGACCTTGTTATGAGTTGCTATAATAATGCTTAGCAGACTCTAGATACCAAGTTTTGAGAGATTTCACAACCATGGAGTTCATGCCCTTAACATCCACCTCAAACACCTTTGGGGCAATATAAAGACAGTTTAATATCTATCTGTTGGAAGTCTTCAGTTGTCTGACTTTAGGTAAACCACTGAAGTGAACCACAACAATAACAGAAACAATGAACACCTGTTCTCAAACTGGAAAACAACGAAACTGAAGTATAATGACAACTGGGTATCAGTAGCCTTCGACACA	-			P-0020424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	95	390	0	ENST00000373344.5:c.189+85_209del		p.X63_splice	ENST00000373344	NM_000489.3	63																																																																															
PMS1	0	MSKCC	GRCh37	2	190708750	190708750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	90	703	0	ENST00000441310.2:c.643G>C	p.Gly215Arg	p.G215R	ENST00000441310	NM_000534.4	215	Ggg/Cgg																																																																														
SETD2	0	MSKCC	GRCh37	3	47139506	47139507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	118	730	0	ENST00000409792.3:c.5080dup	p.Arg1694LysfsTer18	p.R1694Kfs*18	ENST00000409792	NM_014159.6	1694	aga/aAga																																																																														
BAP1	0	MSKCC	GRCh37	3	52436835	52436835	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	81	756	0	ENST00000460680.1:c.1943del	p.Ala648GlyfsTer7	p.A648Gfs*7	ENST00000460680	NM_004656.3	648	gCg/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	43	633	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	26	367	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	79	694	2	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																																																														
FLT4	0	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	32	661	0	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097084	11097084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	57	709	0	ENST00000344626.4:c.579del	p.Gln194SerfsTer109	p.Q194Sfs*109	ENST00000344626	NM_003072.3	192	aGg/ag																																																																														
CDK12	0	MSKCC	GRCh37	17	37619289	37619289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	39	424	0	ENST00000447079.4:c.965G>A	p.Arg322Gln	p.R322Q	ENST00000447079	NM_015083.1	322	cGa/cAa																																																																														
TSC2	0	MSKCC	GRCh37	16	2121873	2121873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	64	698	1	ENST00000219476.3:c.2035G>A	p.Val679Met	p.V679M	ENST00000219476	NM_000548.3	679	Gtg/Atg																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149497347	149497347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140261309		P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	40	514	2	ENST00000261799.4:c.2971C>T	p.Arg991Cys	p.R991C	ENST00000261799	NM_002609.3	991	Cgc/Tgc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372389	55372389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	70	841	4	ENST00000297316.4:c.1079G>A	p.Arg360His	p.R360H	ENST00000297316	NM_022454.3	360	cGc/cAc																																																																														
B2M	0	MSKCC	GRCh37	15	45007901	45007901	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	32	326	0	ENST00000558401.1:c.346+2T>C		p.X116_splice	ENST00000558401	NM_004048.2	116																																																																															
TCF3	0	MSKCC	GRCh37	19	1615698	1615698	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	46	741	1	ENST00000344749.5:c.1573delC	p.Arg525GlyfsTer18	p.R525Gfs*18	ENST00000344749	NM_001136139.2	525	Cgg/gg																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24176329	24176329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	40	648	6	ENST00000263121.7:c.1120C>T	p.Arg374Trp	p.R374W	ENST00000263121	NM_003073.3	374	Cgg/Tgg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274207	10274207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	21	304	0	ENST00000330684.3:c.62C>T	p.Pro21Leu	p.P21L	ENST00000330684	NM_001134407.1	21	cCg/cTg																																																																														
ATM	0	MSKCC	GRCh37	11	108163374	108163374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	26	522	1	ENST00000278616.4:c.4465C>T	p.Arg1489Cys	p.R1489C	ENST00000278616	NM_000051.3	1489	Cgt/Tgt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	56	656	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	80	734	0	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
POLE	0	MSKCC	GRCh37	12	133240613	133240613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201115064		P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	41	479	0	ENST00000320574.5:c.2683G>A	p.Ala895Thr	p.A895T	ENST00000320574	NM_006231.2	895	Gcc/Acc																																																																														
CYLD	0	MSKCC	GRCh37	16	50825539	50825539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	33	523	0	ENST00000398568.2:c.2170G>A	p.Val724Ile	p.V724I	ENST00000398568	NM_001042412.1	724	Gtt/Att																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248737	212248737	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	44	321	0	ENST00000342788.4:c.3530delA	p.Asn1177MetfsTer27	p.N1177Mfs*27	ENST00000342788	NM_005235.2	1177	aAt/at																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18280036	18280036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	40	366	2	ENST00000222254.8:c.2119G>A	p.Ala707Thr	p.A707T	ENST00000222254	NM_005027.3	707	Gcg/Acg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9776616	9776616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	63	606	1	ENST00000377346.4:c.719C>T	p.Thr240Met	p.T240M	ENST00000377346	NM_005026.3	240	aCg/aTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087378	27087378	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	49	605	0	ENST00000324856.7:c.1952T>C	p.Met651Thr	p.M651T	ENST00000324856	NM_006015.4	651	aTg/aCg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088712	27088712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	74	742	1	ENST00000324856.7:c.2321G>A	p.Arg774His	p.R774H	ENST00000324856	NM_006015.4	774	cGt/cAt																																																																														
ELF3	0	MSKCC	GRCh37	1	201981273	201981273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	119	670	1	ENST00000359651.3:c.352G>A	p.Gly118Arg	p.G118R	ENST00000359651		118	Ggg/Agg																																																																														
SMYD3	0	MSKCC	GRCh37	1	246027125	246027125	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	70	721	1	ENST00000388985.4:c.877del	p.Ile293LeufsTer4	p.I293Lfs*4	ENST00000388985		293	Att/tt																																																																														
ARID2	0	MSKCC	GRCh37	12	46246368	46246368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	27	307	0	ENST00000334344.6:c.4462G>A	p.Asp1488Asn	p.D1488N	ENST00000334344	NM_152641.2	1488	Gac/Aac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991671	72991671	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	46	425	0	ENST00000268489.5:c.2374G>C	p.Ala792Pro	p.A792P	ENST00000268489	NM_006885.3	792	Gcc/Ccc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15971393	15971393	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	48	570	0	ENST00000268712.3:c.4556C>A	p.Ser1519Ter	p.S1519*	ENST00000268712	NM_006311.3	1519	tCg/tAg																																																																														
CIC	0	MSKCC	GRCh37	19	42794637	42794637	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	52	655	0	ENST00000575354.2:c.1721del	p.Pro574HisfsTer154	p.P574Hfs*154	ENST00000575354	NM_015125.3	573	Ccc/cc																																																																														
NF2	0	MSKCC	GRCh37	22	30069435	30069435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	60	513	0	ENST00000338641.4:c.1300G>A	p.Glu434Lys	p.E434K	ENST00000338641	NM_000268.3	434	Gag/Aag																																																																														
MST1R	0	MSKCC	GRCh37	3	49933996	49933996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	72	670	0	ENST00000296474.3:c.2416G>A	p.Gly806Arg	p.G806R	ENST00000296474	NM_002447.2	806	Ggg/Agg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911609	134911609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	51	496	0	ENST00000398015.3:c.2074C>T	p.Pro692Ser	p.P692S	ENST00000398015	NM_004441.4	692	Cct/Tct																																																																														
BCL6	0	MSKCC	GRCh37	3	187444528	187444528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	52	536	1	ENST00000232014.4:c.1699G>A	p.Val567Ile	p.V567I	ENST00000232014	NM_001130845.1	567	Gtc/Atc																																																																														
RAD21	0	MSKCC	GRCh37	8	117868967	117868969	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	44	458	0	ENST00000297338.2:c.730_732del	p.Asp244del	p.D244del	ENST00000297338	NM_006265.2	244	GAT/-																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738058	145738058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	123	790	1	ENST00000428558.2:c.2852G>T	p.Gly951Val	p.G951V	ENST00000428558	NM_004260.3	951	gGg/gTg																																																																														
KLF4	0	MSKCC	GRCh37	9	110250403	110250404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	72	611	1	ENST00000374672.4:c.271_272insA	p.Leu91HisfsTer166	p.L91Hfs*166	ENST00000374672	NM_004235.4	91	cta/cAta																																																																														
TET1	0	MSKCC	GRCh37	10	70451077	70451077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	68	684	1	ENST00000373644.4:c.5917G>A	p.Glu1973Lys	p.E1973K	ENST00000373644	NM_030625.2	1973	Gaa/Aaa																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9784894	9784894	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	86	810	0	ENST00000377346.4:c.2897T>A	p.Ile966Asn	p.I966N	ENST00000377346	NM_005026.3	966	aTc/aAc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420329	88420329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	34	475	1	ENST00000360948.2:c.2357G>A	p.Gly786Asp	p.G786D	ENST00000360948	NM_001012338.2	786	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579442	7579442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	276	802	0	ENST00000269305.4:c.245del	p.Pro82ArgfsTer41	p.P82Rfs*41	ENST00000269305	NM_001126112.2	82	cCg/cg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9776671	9776672	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0020432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	27	784	0	ENST00000377346.4:c.774_775del	p.Gln258HisfsTer30	p.Q258Hfs*30	ENST00000377346	NM_005026.3	258	caGTtc/catc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0020436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	1369	1057	1	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
ATRX	0	MSKCC	GRCh37	X	76939037	76939037	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	264	875	0	ENST00000373344.5:c.1711A>T	p.Arg571Ter	p.R571*	ENST00000373344	NM_000489.3	571	Aga/Tga																																																																														
MDM4	0	MSKCC	GRCh37	1	204495487	204495487	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	252	493	1	ENST00000367182.3:c.79-1G>T		p.X27_splice	ENST00000367182	NM_001278516.1	27																																																																															
PIK3C3	0	MSKCC	GRCh37	18	39637979	39637979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	449	765	1	ENST00000262039.4:c.2396G>T	p.Arg799Leu	p.R799L	ENST00000262039	NM_002647.2	799	cGt/cTt																																																																														
STK11	0	MSKCC	GRCh37	19	1219357	1219357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	466	1005	0	ENST00000326873.7:c.409C>T	p.Gln137Ter	p.Q137*	ENST00000326873	NM_000455.4	137	Cag/Tag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098806	178098806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	736	862	2	ENST00000397062.3:c.239C>A	p.Thr80Lys	p.T80K	ENST00000397062	NM_006164.4	80	aCa/aAa																																																																														
TAP2	0	MSKCC	GRCh37	6	32800541	32800541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	481	979	2	ENST00000374899.4:c.1006G>A	p.Val336Ile	p.V336I	ENST00000374899	NM_018833.2	336	Gtt/Att																																																																														
XIAP	0	MSKCC	GRCh37	X	123020336	123020337	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0020438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	206	645	2	ENST00000355640.3:c.824_825delinsTT	p.Trp275Phe	p.W275F	ENST00000355640		275	tGG/tTT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	255	553	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ALK	0	MSKCC	GRCh37	2	29416493	29416493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	255	635	0	ENST00000389048.3:c.4460C>T	p.Ser1487Leu	p.S1487L	ENST00000389048	NM_004304.4	1487	tCg/tTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187534356	187534356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	200	599	0	ENST00000441802.2:c.9370G>A	p.Glu3124Lys	p.E3124K	ENST00000441802	NM_005245.3	3124	Gaa/Aaa																																																																														
RNF43	0	MSKCC	GRCh37	17	56436140	56436140	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	452	630	0	ENST00000407977.2:c.997del	p.Gln333LysfsTer86	p.Q333Kfs*86	ENST00000407977		333	Caa/aa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274090	10274090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	403	593	1	ENST00000330684.3:c.179C>T	p.Ala60Val	p.A60V	ENST00000330684	NM_001134407.1	60	gCg/gTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11189840	11189840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	202	563	0	ENST00000361445.4:c.5669G>A	p.Arg1890His	p.R1890H	ENST00000361445	NM_004958.3	1890	cGt/cAt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710688	114710688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	175	503	0	ENST00000543371.1:c.173G>A	p.Ser58Asn	p.S58N	ENST00000543371	NM_001198531.1	58	aGc/aAc																																																																														
ATM	0	MSKCC	GRCh37	11	108205711	108205711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	183	386	1	ENST00000278616.4:c.8026G>A	p.Glu2676Lys	p.E2676K	ENST00000278616	NM_000051.3	2676	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AACTGTTACAC			P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	394	580	1	ENST00000269305.4:c.711_721dup	p.Ser241CysfsTer10	p.S241Cfs*10	ENST00000269305	NM_001126112.2	241	tcc/tGTGTAACAGTTcc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212286769	212286769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	288	496	0	ENST00000342788.4:c.2927G>C	p.Arg976Thr	p.R976T	ENST00000342788	NM_005235.2	976	aGg/aCg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212989568	212989568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	236	378	0	ENST00000342788.4:c.143C>A	p.Ala48Asp	p.A48D	ENST00000342788	NM_005235.2	48	gCc/gAc																																																																														
ESR1	0	MSKCC	GRCh37	6	152415704	152415704	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	285	456	1	ENST00000206249.3:c.1553+1G>A		p.X518_splice	ENST00000206249	NM_000125.3	518																																																																															
PIK3CG	0	MSKCC	GRCh37	7	106509567	106509567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	218	558	0	ENST00000359195.3:c.1561G>T	p.Asp521Tyr	p.D521Y	ENST00000359195	NM_002649.2	521	Gac/Tac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341908	8341908	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	152	532	0	ENST00000356435.5:c.4732del	p.Thr1578LeufsTer2	p.T1578Lfs*2	ENST00000356435		1578	Act/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	113	480	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CBL	0	MSKCC	GRCh37	11	119146825	119146825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	63	449	0	ENST00000264033.4:c.988G>T	p.Asp330Tyr	p.D330Y	ENST00000264033	NM_005188.3	330	Gat/Tat																																																																														
STK11	0	MSKCC	GRCh37	19	1207203	1207204	+	splice_donor_variant	Splice_Site	DEL	GT	GT	-			P-0025976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	95	688	0	ENST00000326873.7:c.290+1_290+2del		p.X97_splice	ENST00000326873	NM_000455.4	97																																																																															
APC	0	MSKCC	GRCh37	5	112151270	112151270	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	48	361	0	ENST00000257430.4:c.913del	p.Thr305GlnfsTer31	p.T305Qfs*31	ENST00000257430	NM_000038.5	305	Aca/ca																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	183	446	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0025977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	188	603	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ATM	0	MSKCC	GRCh37	11	108196860	108196860	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	133	420	1	ENST00000278616.4:c.6883G>T	p.Glu2295Ter	p.E2295*	ENST00000278616	NM_000051.3	2295	Gaa/Taa																																																																														
RAD21	0	MSKCC	GRCh37	8	117874129	117874129	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	105	539	0	ENST00000297338.2:c.325A>G	p.Thr109Ala	p.T109A	ENST00000297338	NM_006265.2	109	Act/Gct																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20148726	20148727	+	splice_acceptor_variant	Splice_Site	DEL	CT	CT	-			P-0025977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	69	248	0	ENST00000379607.5:c.338-2_338-1del		p.X113_splice	ENST00000379607	NM_001412.3	113																																																																															
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	134	575	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																														
AR	0	MSKCC	GRCh37	X	66765173	66765173	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	12	163	1	ENST00000374690.3:c.185A>T	p.Gln62Leu	p.Q62L	ENST00000374690	NM_000044.3	62	cAg/cTg																																																																														
AR	0	MSKCC	GRCh37	X	66863125	66863125	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs139524801		P-0025980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	55	534	1	ENST00000374690.3:c.1644G>T	p.Leu548Phe	p.L548F	ENST00000374690	NM_000044.3	548	ttG/ttT																																																																														
CREBBP	0	MSKCC	GRCh37	16	3801794	3801794	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	64	547	1	ENST00000262367.5:c.3712G>T	p.Glu1238Ter	p.E1238*	ENST00000262367	NM_004380.2	1238	Gag/Tag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858470	9858470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	56	515	0	ENST00000330684.3:c.2931C>A	p.Asn977Lys	p.N977K	ENST00000330684	NM_001134407.1	977	aaC/aaA																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	144	659	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
RICTOR	0	MSKCC	GRCh37	5	38953162	38953162	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200255149		P-0025981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	40	299	0	ENST00000357387.3:c.2822A>G	p.Asn941Ser	p.N941S	ENST00000357387	NM_152756.3	941	aAt/aGt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0025981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	48	458	0	ENST00000304494.5:c.149A>C	p.Gln50Pro	p.Q50P	ENST00000304494	NM_000077.4	50	cAg/cCg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0025981-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	48	458	0	ENST00000304494.5:c.149A>C	p.Gln50Pro	p.Q50P	ENST00000304494	NM_000077.4	50	cAg/cCg																																																																														
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	119	768	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
EGFR	0	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	107	720	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420202	88420202	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	45	660	1	ENST00000360948.2:c.2484del	p.Lys829ArgfsTer18	p.K829Rfs*18	ENST00000360948	NM_001012338.2	828	ggG/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	167	1138	2	ENST00000269305.4:c.400T>A	p.Phe134Ile	p.F134I	ENST00000269305	NM_001126112.2	134	Ttt/Att																																																																														
PAK7	0	MSKCC	GRCh37	20	9561532	9561532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	92	592	0	ENST00000353224.5:c.250G>T	p.Gly84Cys	p.G84C	ENST00000353224	NM_177990.2	84	Ggc/Tgc																																																																														
IGF1	0	MSKCC	GRCh37	12	102813385	102813385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	141	559	0	ENST00000307046.8:c.304C>G	p.Leu102Val	p.L102V	ENST00000307046	NM_001111285.1	102	Cta/Gta																																																																														
AXIN2	0	MSKCC	GRCh37	17	63545660	63545661	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	92	591	0	ENST00000307078.5:c.933_934delinsAT	p.Met312Leu	p.M312L	ENST00000307078	NM_004655.3	311	tcCAtg/tcATtg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267538	198267538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	44	466	0	ENST00000335508.6:c.1819G>T	p.Ala607Ser	p.A607S	ENST00000335508	NM_012433.2	607	Gct/Tct																																																																														
ERBB4	0	MSKCC	GRCh37	2	212615426	212615426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	105	682	0	ENST00000342788.4:c.560G>T	p.Gly187Val	p.G187V	ENST00000342788	NM_005235.2	187	gGa/gTa																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138375069	138375069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	131	814	1	ENST00000289153.2:c.2990G>T	p.Gly997Val	p.G997V	ENST00000289153	NM_006219.2	997	gGg/gTg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143191848	143191848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	101	573	0	ENST00000262992.4:c.583G>T	p.Asp195Tyr	p.D195Y	ENST00000262992	NM_001101669.1	195	Gac/Tac																																																																														
MSH3	0	MSKCC	GRCh37	5	79952317	79952317	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	113	772	0	ENST00000265081.6:c.325G>T	p.Gly109Ter	p.G109*	ENST00000265081	NM_002439.4	109	Gga/Tga																																																																														
RASA1	0	MSKCC	GRCh37	5	86564302	86564302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	97	416	0	ENST00000274376.6:c.34G>T	p.Gly12Cys	p.G12C	ENST00000274376	NM_002890.2	12	Ggc/Tgc																																																																														
LATS1	0	MSKCC	GRCh37	6	150004482	150004482	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	127	721	0	ENST00000253339.5:c.1743A>C	p.Lys581Asn	p.K581N	ENST00000253339		581	aaA/aaC																																																																														
RBM10	0	MSKCC	GRCh37	X	47039309	47039309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1119	180	1025	0	ENST00000329236.7:c.701G>T	p.Ser234Ile	p.S234I	ENST00000329236	NM_001204466.1	234	aGc/aTc																																																																														
MED12	0	MSKCC	GRCh37	X	70345512	70345512	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0025984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	101	718	1	ENST00000374080.3:c.2372-1G>T		p.X791_splice	ENST00000374080		791																																																																															
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	378	668	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	107	677	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	299	477	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	189	399	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032541	12032541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	261	428	0	ENST00000353533.5:c.977C>T	p.Pro326Leu	p.P326L	ENST00000353533	NM_003010.3	326	cCg/cTg																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149497272	149497272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201061735		P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	409	677	0	ENST00000261799.4:c.3046G>A	p.Glu1016Lys	p.E1016K	ENST00000261799	NM_002609.3	1016	Gag/Aag																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128432131	128432132	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	101	588	0	ENST00000265960.3:c.314dup	p.Asn105LysfsTer10	p.N105Kfs*10	ENST00000265960	NM_001006617.1	105	aat/aaAt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	136	529	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
JAK2	0	MSKCC	GRCh37	9	5090890	5090890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	14	231	0	ENST00000381652.3:c.3038C>G	p.Pro1013Arg	p.P1013R	ENST00000381652	NM_004972.3	1013	cCt/cGt																																																																														
ARID2	0	MSKCC	GRCh37	12	46244997	46244997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	461	674	0	ENST00000334344.6:c.3091C>T	p.Gln1031Ter	p.Q1031*	ENST00000334344	NM_152641.2	1031	Cag/Tag																																																																														
SOX2	0	MSKCC	GRCh37	3	181430441	181430441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	470	922	2	ENST00000325404.1:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000325404	NM_003106.3	98	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	559	779	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18439825	18439825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	132	579	0	ENST00000266497.5:c.723C>A	p.Ser241Arg	p.S241R	ENST00000266497		241	agC/agA																																																																														
TBX3	0	MSKCC	GRCh37	12	115112292	115112292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	46	175	0	ENST00000257566.3:c.1448C>T	p.Thr483Met	p.T483M	ENST00000257566	NM_016569.3	483	aCg/aTg																																																																														
MET	0	MSKCC	GRCh37	7	116417463	116417463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	260	395	0	ENST00000397752.3:c.3280C>T	p.His1094Tyr	p.H1094Y	ENST00000397752	NM_000245.2	1094	Cat/Tat																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390964	89390964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	83	499	0	ENST00000336596.2:c.1030G>A	p.Asp344Asn	p.D344N	ENST00000336596	NM_005233.5	344	Gac/Aac																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463578	25463578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	98	692	2	ENST00000264709.3:c.2104G>A	p.Asp702Asn	p.D702N	ENST00000264709	NM_175629.2	702	Gat/Aat																																																																														
NCOR1	0	MSKCC	GRCh37	17	16075157	16075157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	75	391	0	ENST00000268712.3:c.395C>G	p.Pro132Arg	p.P132R	ENST00000268712	NM_006311.3	132	cCg/cGg																																																																														
FH	0	MSKCC	GRCh37	1	241663871	241663871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	101	571	0	ENST00000366560.3:c.1256C>T	p.Ser419Leu	p.S419L	ENST00000366560	NM_000143.3	419	tCa/tTa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873005	134873005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	454	580	0	ENST00000398015.3:c.1309G>T	p.Val437Phe	p.V437F	ENST00000398015	NM_004441.4	437	Gtt/Ttt																																																																														
SPEN	0	MSKCC	GRCh37	1	16259757	16259757	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	206	616	0	ENST00000375759.3:c.7022A>T	p.Lys2341Met	p.K2341M	ENST00000375759	NM_015001.2	2341	aAg/aTg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462852	120462852	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	59	232	0	ENST00000256646.2:c.5479G>C	p.Asp1827His	p.D1827H	ENST00000256646	NM_024408.3	1827	Gat/Cat																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843669	156843669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	286	1070	0	ENST00000524377.1:c.1095C>A	p.Asn365Lys	p.N365K	ENST00000524377	NM_002529.3	365	aaC/aaA																																																																														
SMYD3	0	MSKCC	GRCh37	1	246493815	246493815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	80	508	0	ENST00000388985.4:c.361G>C	p.Glu121Gln	p.E121Q	ENST00000388985		121	Gag/Cag																																																																														
TET1	0	MSKCC	GRCh37	10	70405082	70405082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	43	738	0	ENST00000373644.4:c.2596G>C	p.Glu866Gln	p.E866Q	ENST00000373644	NM_030625.2	866	Gaa/Caa																																																																														
CCND1	0	MSKCC	GRCh37	11	69458693	69458693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	206	673	1	ENST00000227507.2:c.508G>A	p.Glu170Lys	p.E170K	ENST00000227507	NM_053056.2	170	Gag/Aag																																																																														
ATM	0	MSKCC	GRCh37	11	108121627	108121627	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	201	589	0	ENST00000278616.4:c.1435G>C	p.Asp479His	p.D479H	ENST00000278616	NM_000051.3	479	Gat/Cat																																																																														
PTPN11	0	MSKCC	GRCh37	12	112919996	112919996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	174	1107	1	ENST00000351677.2:c.1211C>T	p.Ser404Leu	p.S404L	ENST00000351677	NM_002834.3	404	tCa/tTa																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281550	49281550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	111	784	2	ENST00000282018.3:c.597G>T	p.Gln199His	p.Q199H	ENST00000282018	NM_020377.2	199	caG/caT																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987024	36987024	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	414	644	1	ENST00000354822.5:c.665A>T	p.Glu222Val	p.E222V	ENST00000354822	NM_001079668.2	222	gAg/gTg																																																																														
MGA	0	MSKCC	GRCh37	15	41991354	41991354	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	61	571	0	ENST00000219905.7:c.2185G>C	p.Glu729Gln	p.E729Q	ENST00000219905	NM_001164273.1	729	Gaa/Caa																																																																														
MGA	0	MSKCC	GRCh37	15	42042295	42042295	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	206	681	1	ENST00000219905.7:c.6490G>T	p.Gly2164Ter	p.G2164*	ENST00000219905	NM_001164273.1	2164	Gga/Tga																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680771	88680771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	123	731	0	ENST00000360948.2:c.486C>G	p.Phe162Leu	p.F162L	ENST00000360948	NM_001012338.2	162	ttC/ttG																																																																														
CYLD	0	MSKCC	GRCh37	16	50783894	50783894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	104	880	1	ENST00000398568.2:c.285G>T	p.Lys95Asn	p.K95N	ENST00000398568	NM_001042412.1	95	aaG/aaT																																																																														
CDK12	0	MSKCC	GRCh37	17	37627691	37627691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	624	866	1	ENST00000447079.4:c.1606C>T	p.Pro536Ser	p.P536S	ENST00000447079	NM_015083.1	536	Cca/Tca																																																																														
EZH1	0	MSKCC	GRCh37	17	40870589	40870589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1285	121	789	0	ENST00000428826.2:c.814C>G	p.Gln272Glu	p.Q272E	ENST00000428826		272	Cag/Gag																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554272	63554272	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	134	669	1	ENST00000307078.5:c.467A>G	p.Tyr156Cys	p.Y156C	ENST00000307078	NM_004655.3	156	tAc/tGc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212159	5212159	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	163	979	0	ENST00000357368.4:c.4872G>C	p.Met1624Ile	p.M1624I	ENST00000357368	NM_002850.3	1624	atG/atC																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276694	15276711	+	inframe_deletion	In_Frame_Del	DEL	CCGCTTGGCTGCATCAGC	CCGCTTGGCTGCATCAGC	-			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	655	854	1	ENST00000263388.2:c.5554_5571del	p.Ala1852_Arg1857del	p.A1852_R1857del	ENST00000263388	NM_000435.2	1852	GCTGATGCAGCCAAGCGG/-																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18272088	18272088	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	27	76	0	ENST00000222254.8:c.599-1G>A		p.X200_splice	ENST00000222254	NM_005027.3	200																																																																															
CCNE1	0	MSKCC	GRCh37	19	30313196	30313196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	454	709	0	ENST00000262643.3:c.890G>A	p.Gly297Asp	p.G297D	ENST00000262643	NM_001238.2	297	gGt/gAt																																																																														
EPCAM	0	MSKCC	GRCh37	2	47606986	47606986	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	86	608	0	ENST00000263735.4:c.736C>G	p.Gln246Glu	p.Q246E	ENST00000263735	NM_002354.2	246	Caa/Gaa																																																																														
TMEM127	0	MSKCC	GRCh37	2	96919823	96919823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	94	494	1	ENST00000258439.3:c.440C>T	p.Ser147Phe	p.S147F	ENST00000258439	NM_001193304.2	147	tCt/tTt																																																																														
CUL3	0	MSKCC	GRCh37	2	225378288	225378288	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	150	428	0	ENST00000264414.4:c.607G>T	p.Glu203Ter	p.E203*	ENST00000264414	NM_003590.4	203	Gaa/Taa																																																																														
CUL3	0	MSKCC	GRCh37	2	225449679	225449679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	67	423	0	ENST00000264414.4:c.48G>T	p.Met16Ile	p.M16I	ENST00000264414	NM_003590.4	16	atG/atT																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023144	31023144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	143	787	0	ENST00000375687.4:c.2629G>A	p.Glu877Lys	p.E877K	ENST00000375687	NM_015338.5	877	Gaa/Aaa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	152	750	0	ENST00000373198.4:c.3659G>T	p.Arg1220Leu	p.R1220L	ENST00000373198	NM_133170.3	1220	cGg/cTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790171	40790171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	170	434	1	ENST00000373198.4:c.2560C>A	p.Arg854Ser	p.R854S	ENST00000373198	NM_133170.3	854	Cgc/Agc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40828007	40828007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	31	343	0	ENST00000373198.4:c.2421G>T	p.Lys807Asn	p.K807N	ENST00000373198	NM_133170.3	807	aaG/aaT																																																																														
RTEL1	0	MSKCC	GRCh37	20	62316925	62316925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	280	630	0	ENST00000508582.2:c.1313G>T	p.Gly438Val	p.G438V	ENST00000508582		438	gGg/gTg																																																																														
ERG	0	MSKCC	GRCh37	21	39762958	39762958	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	76	595	0	ENST00000288319.7:c.878A>T	p.Tyr293Phe	p.Y293F	ENST00000288319	NM_182918.3	293	tAt/tTt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71021740	71021740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	165	486	0	ENST00000318789.4:c.1618G>A	p.Glu540Lys	p.E540K	ENST00000318789	NM_032682.5	540	Gaa/Aaa																																																																														
KDR	0	MSKCC	GRCh37	4	55946227	55946228	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	69	372	3	ENST00000263923.4:c.3951_3952delinsAA	p.Val1318Met	p.V1318M	ENST00000263923	NM_002253.2	1317	acCGtg/acAAtg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31421402	31421402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	322	579	0	ENST00000344624.3:c.3502G>T	p.Asp1168Tyr	p.D1168Y	ENST00000344624		1168	Gat/Tat																																																																														
FGFR4	0	MSKCC	GRCh37	5	176519478	176519478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1288	366	1086	1	ENST00000292408.4:c.884G>T	p.Gly295Val	p.G295V	ENST00000292408	NM_213647.1	295	gGa/gTa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523718	176523718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	255	775	0	ENST00000292408.4:c.2129G>T	p.Arg710Leu	p.R710L	ENST00000292408	NM_213647.1	710	cGa/cTa																																																																														
FLT4	0	MSKCC	GRCh37	5	180048756	180048756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	502	878	0	ENST00000261937.6:c.1806C>A	p.His602Gln	p.H602Q	ENST00000261937	NM_182925.4	602	caC/caA																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031889	26031889	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	40	270	0	ENST00000244661.2:c.400G>T	p.Glu134Ter	p.E134*	ENST00000244661	NM_003537.3	134	Gaa/Taa																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032015	26032015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	63	417	0	ENST00000244661.2:c.274G>T	p.Ala92Ser	p.A92S	ENST00000244661	NM_003537.3	92	Gcg/Tcg																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324214	31324214	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	97	652	0	ENST00000412585.2:c.349C>G	p.His117Asp	p.H117D	ENST00000412585	NM_005514.6	117	Cac/Gac																																																																														
EPHA7	0	MSKCC	GRCh37	6	94068121	94068121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	102	330	0	ENST00000369303.4:c.841C>G	p.Arg281Gly	p.R281G	ENST00000369303	NM_004440.3	281	Cgt/Ggt																																																																														
PARK2	0	MSKCC	GRCh37	6	162622234	162622234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	147	516	0	ENST00000366898.1:c.463C>G	p.Gln155Glu	p.Q155E	ENST00000366898	NM_004562.2	155	Caa/Gaa																																																																														
EGFR	0	MSKCC	GRCh37	7	55272995	55272995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	224	711	0	ENST00000275493.2:c.3318G>T	p.Gln1106His	p.Q1106H	ENST00000275493	NM_005228.3	1106	caG/caT																																																																														
CDK6	0	MSKCC	GRCh37	7	92404147	92404147	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	161	354	0	ENST00000265734.4:c.234-2del		p.X78_splice	ENST00000265734	NM_001259.6	78																																																																															
MET	0	MSKCC	GRCh37	7	116340196	116340196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	50	327	0	ENST00000397752.3:c.1058C>T	p.Ser353Phe	p.S353F	ENST00000397752	NM_000245.2	353	tCt/tTt																																																																														
AGO2	0	MSKCC	GRCh37	8	141549478	141549478	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	64	437	0	ENST00000220592.5:c.2110T>G	p.Phe704Val	p.F704V	ENST00000220592	NM_012154.3	704	Ttc/Gtc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949138	44949138	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	99	600	0	ENST00000377967.4:c.3699G>T	p.Trp1233Cys	p.W1233C	ENST00000377967	NM_021140.2	1233	tgG/tgT																																																																														
AMER1	0	MSKCC	GRCh37	X	63412464	63412464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	170	965	0	ENST00000330258.3:c.703C>A	p.Pro235Thr	p.P235T	ENST00000330258	NM_152424.3	235	Cct/Act																																																																														
AMER1	0	MSKCC	GRCh37	X	63413055	63413055	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	295	1015	0	ENST00000330258.3:c.112G>T	p.Glu38Ter	p.E38*	ENST00000330258	NM_152424.3	38	Gaa/Taa																																																																														
ATRX	0	MSKCC	GRCh37	X	76938572	76938572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	113	589	0	ENST00000373344.5:c.2176G>T	p.Asp726Tyr	p.D726Y	ENST00000373344	NM_000489.3	726	Gat/Tat																																																																														
BTK	0	MSKCC	GRCh37	X	100615634	100615634	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	151	707	0	ENST00000308731.7:c.698T>A	p.Leu233Gln	p.L233Q	ENST00000308731	NM_000061.2	233	cTa/cAa																																																																														
XIAP	0	MSKCC	GRCh37	X	123025112	123025112	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TT			P-0026043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	82	805	0	ENST00000355640.3:c.1002delinsTT	p.Lys334AsnfsTer16	p.K334Nfs*16	ENST00000355640		334	aaG/aaTT																																																																														
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	472	939	36	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932365	36932365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	715	673	80	ENST00000361632.4:c.2104G>A	p.Asp702Asn	p.D702N	ENST00000361632		702	Gat/Aat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426885	49426885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	227	450	12	ENST00000301067.7:c.11603G>T	p.Gly3868Val	p.G3868V	ENST00000301067	NM_003482.3	3868	gGg/gTg																																																																														
RB1	0	MSKCC	GRCh37	13	48937023	48937024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0026047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	602	513	47	ENST00000267163.4:c.795dup	p.Gln266ThrfsTer5	p.Q266Tfs*5	ENST00000267163	NM_000321.2	264	gca/gcAa																																																																														
POLD1	0	MSKCC	GRCh37	19	50918759	50918759	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	398	823	29	ENST00000440232.2:c.2629G>T	p.Asp877Tyr	p.D877Y	ENST00000440232	NM_002691.3	877	Gat/Tat																																																																														
TMEM127	0	MSKCC	GRCh37	2	96919855	96919855	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0026047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	145	340	21	ENST00000258439.3:c.410-2A>G		p.X137_splice	ENST00000258439	NM_001193304.2	137																																																																															
PPP4R2	0	MSKCC	GRCh37	3	73108204	73108204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	50	63	3	ENST00000356692.5:c.304C>T	p.Gln102Ter	p.Q102*	ENST00000356692		102	Cag/Tag																																																																														
ATR	0	MSKCC	GRCh37	3	142222296	142222296	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0026047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	219	413	18	ENST00000350721.4:c.5197-1G>C		p.X1733_splice	ENST00000350721	NM_001184.3	1733																																																																															
PDGFRA	0	MSKCC	GRCh37	4	55139849	55139849	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0026047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	221	406	27	ENST00000257290.5:c.1510A>T	p.Lys504Ter	p.K504*	ENST00000257290	NM_006206.4	504	Aag/Tag																																																																														
ATRX	0	MSKCC	GRCh37	X	76829791	76829791	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	100	377	0	ENST00000373344.5:c.6250T>G	p.Tyr2084Asp	p.Y2084D	ENST00000373344	NM_000489.3	2084	Tac/Gac																																																																														
KIT	0	MSKCC	GRCh37	4	55594201	55594203	+	missense_variant	Missense_Mutation	ONP	AAG	AAG	GAT			P-0026047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	250	370	14	ENST00000288135.5:c.1904_1906delinsGAT	p.Glu635_Ala636delinsGlySer	p.E635_A636delinsGS	ENST00000288135	NM_000222.2	635	gAAGcc/gGATcc																																																																														
TSC1	0	MSKCC	GRCh37	9	135772964	135772964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	196	412	25	ENST00000298552.3:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000298552	NM_001162426.1	887	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	230	539	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TSC2	0	MSKCC	GRCh37	16	2121856	2121856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	599	681	4	ENST00000219476.3:c.2018C>T	p.Ala673Val	p.A673V	ENST00000219476	NM_000548.3	673	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577128	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAGCTGTT			P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	379	785	0	ENST00000269305.4:c.802_810dup	p.Asn268_Phe270dup	p.N268_F270dup	ENST00000269305	NM_001126112.2	268	-/AACAGCTTT																																																																														
ALK	0	MSKCC	GRCh37	2	30143333	30143333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	370	906	0	ENST00000389048.3:c.193C>T	p.Arg65Cys	p.R65C	ENST00000389048	NM_004304.4	65	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	180	473	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	232	403	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101907098	101907098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	245	473	2	ENST00000374994.4:c.1058G>T	p.Gly353Val	p.G353V	ENST00000374994	NM_004612.2	353	gGa/gTa																																																																														
AMER1	0	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	551	920	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0018048-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	123	319	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0019623-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	134	651	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019623-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	140	595	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
BLM	0	MSKCC	GRCh37	15	91293158	91293158	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019623-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			369	114	531	0	ENST00000355112.3:c.660G>T	p.Leu220Phe	p.L220F	ENST00000355112	NM_000057.2	220	ttG/ttT																																																																														
PTEN	0	MSKCC	GRCh37	10	89720817	89720818	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	G			P-0019623-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	36	333	1	ENST00000371953.3:c.968_969delinsG	p.Asn323ArgfsTer21	p.N323Rfs*21	ENST00000371953	NM_000314.4	323	aAT/aG																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			647	222	645	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PPARG	0	MSKCC	GRCh37	3	12475550	12475550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020573-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			762	179	568	0	ENST00000287820.6:c.1424C>T	p.Thr475Met	p.T475M	ENST00000287820	NM_015869.4	475	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579182	7579319	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAG	AAACTATAAAAAAACACTGACAGGAAGCCAAAGGGTGAAGAGGAATCCCAAAGTTCCAAACAAAAGAAATGCAGGGGGATACGGCCAGGCATTGAAGTCTCATGGAAGCCAGCCCCTCAGGGCAACTGACCGTGCAAG	-			P-0025851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			7	185	68	0	ENST00000269305.4:c.368_375+130del		p.X123_splice	ENST00000269305	NM_001126112.2	123																																																																															
EED	0	MSKCC	GRCh37	11	85975282	85975282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	148	373	1	ENST00000263360.6:c.703C>T	p.His235Tyr	p.H235Y	ENST00000263360	NM_003797.3	235	Cac/Tac																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133300	38133300	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025851-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	186	507	0	ENST00000317025.8:c.4173G>C	p.Lys1391Asn	p.K1391N	ENST00000317025	NM_023034.1	1391	aaG/aaC																																																																														
RXRA	0	MSKCC	GRCh37	9	137309018	137309018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	448	840	2	ENST00000481739.1:c.625C>T	p.Arg209Trp	p.R209W	ENST00000481739	NM_002957.4	209	Cgg/Tgg																																																																														
SLX4	0	MSKCC	GRCh37	16	3639441	3639441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	233	787	1	ENST00000294008.3:c.4198G>A	p.Asp1400Asn	p.D1400N	ENST00000294008	NM_032444.2	1400	Gat/Aat																																																																														
CDK12	0	MSKCC	GRCh37	17	37618876	37618877	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0025988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	245	752	0	ENST00000447079.4:c.552_553del	p.Arg185GlufsTer14	p.R185Efs*14	ENST00000447079	NM_015083.1	184	acCAgg/acgg																																																																														
CDK12	0	MSKCC	GRCh37	17	37672049	37672049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	191	625	0	ENST00000447079.4:c.2834T>C	p.Leu945Pro	p.L945P	ENST00000447079	NM_015083.1	945	cTa/cCa																																																																														
BCL6	0	MSKCC	GRCh37	3	187447439	187447439	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	283	697	2	ENST00000232014.4:c.754A>G	p.Asn252Asp	p.N252D	ENST00000232014	NM_001130845.1	252	Aat/Gat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577148	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1060501194		P-0025993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	451	538	0	ENST00000269305.4:c.790del	p.Leu264TyrfsTer81	p.L264Yfs*81	ENST00000269305	NM_001126112.2	264	Cta/ta																																																																														
LATS1	0	MSKCC	GRCh37	6	150004741	150004741	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	109	427	0	ENST00000253339.5:c.1484A>C	p.Gln495Pro	p.Q495P	ENST00000253339		495	cAa/cCa																																																																														
JAK2	0	MSKCC	GRCh37	9	5123018	5123050	+	inframe_deletion	In_Frame_Del	DEL	CACTGACAGAGAGCAAGTTTTCTGTGGCCTCAG	CACTGACAGAGAGCAAGTTTTCTGTGGCCTCAG	-			P-0025993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	59	335	0	ENST00000381652.3:c.3074_3106del	p.Ser1025_Asp1036delinsTyr	p.S1025_D1036delinsY	ENST00000381652	NM_004972.3	1025	tCACTGACAGAGAGCAAGTTTTCTGTGGCCTCAGat/tat																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	439	592	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177450	56177450	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	128	401	0	ENST00000399503.3:c.2425del	p.His809ThrfsTer13	p.H809Tfs*13	ENST00000399503	NM_005921.1	808	tCc/tc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879794	37879794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	247	419	0	ENST00000269571.5:c.2089G>T	p.Val697Leu	p.V697L	ENST00000269571		697	Gtg/Ttg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171704	36171704	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	134	459	0	ENST00000300305.3:c.861C>A	p.Tyr287Ter	p.Y287*	ENST00000300305		287	taC/taA																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177555	56177555	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	136	361	0	ENST00000399503.3:c.2530del	p.Ser844ProfsTer13	p.S844Pfs*13	ENST00000399503	NM_005921.1	843	gTt/gt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	224	526	1	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	224	526	1	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	522	712	0	ENST00000269305.4:c.641del	p.His214LeufsTer33	p.H214Lfs*33	ENST00000269305	NM_001126112.2	214	cAt/ct																																																																														
PTPRS	0	MSKCC	GRCh37	19	5210541	5210541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	82	653	1	ENST00000357368.4:c.5426C>T	p.Pro1809Leu	p.P1809L	ENST00000357368	NM_002850.3	1809	cCg/cTg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	224	526	1	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
NTRK1	0	MSKCC	GRCh37	1	156837911	156837911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	373	895	1	ENST00000524377.1:c.444C>A	p.Asn148Lys	p.N148K	ENST00000524377	NM_002529.3	148	aaC/aaA																																																																														
RRAS2	0	MSKCC	GRCh37	11	14303211	14303212	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0026004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	153	687	1	ENST00000256196.4:c.463_464delinsTG	p.Glu155Trp	p.E155W	ENST00000256196		155	GAg/TGg																																																																														
ARID2	0	MSKCC	GRCh37	12	46123898	46123898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	87	411	0	ENST00000334344.6:c.164del	p.Thr55IlefsTer3	p.T55Ifs*3	ENST00000334344	NM_152641.2	55	aCt/at																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554596	63554596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	46	488	0	ENST00000307078.5:c.143C>A	p.Pro48His	p.P48H	ENST00000307078	NM_004655.3	48	cCc/cAc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31374348	31374348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	226	670	0	ENST00000328111.2:c.347G>A	p.Arg116Lys	p.R116K	ENST00000328111	NM_006892.3	116	aGg/aAg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467956	50467957	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACGGA			P-0026004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	137	543	0	ENST00000331340.3:c.1192_1196dup	p.Asp399GlufsTer18	p.D399Efs*18	ENST00000331340	NM_006060.4	397	-/ACGGA																																																																														
BRAF	0	MSKCC	GRCh37	7	140453125	140453138	+	protein_altering_variant	In_Frame_Del	DEL	ATCGAGATTTCACT	ATCGAGATTTCACT	CATCA			P-0026004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	87	533	2	ENST00000288602.6:c.1797_1810delinsTGATG	p.Val600_Trp604delinsAspGly	p.V600_W604delinsDG	ENST00000288602	NM_004333.4	599	acAGTGAAATCTCGATgg/acTGATGgg																																																																														
MEN1	0	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0026006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	335	581	3	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600022	10600023	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0026006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	494	741	2	ENST00000171111.5:c.1553_1554del	p.Cys518TyrfsTer8	p.C518Yfs*8	ENST00000171111	NM_203500.1	518	tGT/t																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	67	422	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	228	604	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
ARID2	0	MSKCC	GRCh37	12	46205268	46205268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0026007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	113	521	0	ENST00000334344.6:c.353del	p.Pro118GlnfsTer97	p.P118Qfs*97	ENST00000334344	NM_152641.2	118	Cca/ca																																																																														
FOXO1	0	MSKCC	GRCh37	13	41240288	41240288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	51	390	0	ENST00000379561.5:c.62G>T	p.Arg21Leu	p.R21L	ENST00000379561	NM_002015.3	21	cGc/cTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214148	36214148	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	525	764	0	ENST00000222270.7:c.2974G>T	p.Gly992Cys	p.G992C	ENST00000222270	NM_014727.1	992	Ggc/Tgc																																																																														
POLD1	0	MSKCC	GRCh37	19	50905968	50905968	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0026007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	68	692	0	ENST00000440232.2:c.940A>T	p.Ser314Cys	p.S314C	ENST00000440232	NM_002691.3	314	Agc/Tgc																																																																														
XPO1	0	MSKCC	GRCh37	2	61715770	61715770	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	42	368	0	ENST00000401558.2:c.2159T>C	p.Val720Ala	p.V720A	ENST00000401558	NM_003400.3	720	gTa/gCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	193	418	0				ENST00000310581	NM_198253.2																																																																																
PAK7	0	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	168	367	0	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554008	63554008	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199798353		P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	217	394	0	ENST00000307078.5:c.731C>T	p.Ser244Leu	p.S244L	ENST00000307078	NM_004655.3	244	tCg/tTg																																																																														
MET	0	MSKCC	GRCh37	7	116409831	116409831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	142	332	0	ENST00000397752.3:c.2716G>A	p.Glu906Lys	p.E906K	ENST00000397752	NM_000245.2	906	Gag/Aag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566827	212566827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	141	290	0	ENST00000342788.4:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000342788	NM_005235.2	452	Gaa/Aaa																																																																														
NF1	0	MSKCC	GRCh37	17	29556367	29556367	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	246	421	2	ENST00000358273.4:c.2734C>T	p.Gln912Ter	p.Q912*	ENST00000358273	NM_001042492.2	912	Caa/Taa																																																																														
JAK3	0	MSKCC	GRCh37	19	17945795	17945795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	294	608	0	ENST00000458235.1:c.2065C>T	p.Pro689Ser	p.P689S	ENST00000458235	NM_000215.3	689	Ccc/Tcc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367278	50367278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	180	390	0	ENST00000331340.3:c.85G>A	p.Glu29Lys	p.E29K	ENST00000331340	NM_006060.4	29	Gag/Aag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944527	40944527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	207	547	3	ENST00000373198.4:c.1975G>A	p.Asp659Asn	p.D659N	ENST00000373198	NM_133170.3	659	Gat/Aat																																																																														
RBM10	0	MSKCC	GRCh37	X	47044542	47044542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	71	671	0	ENST00000329236.7:c.1805G>A	p.Arg602Gln	p.R602Q	ENST00000329236	NM_001204466.1	602	cGa/cAa																																																																														
TP63	0	MSKCC	GRCh37	3	189586422	189586422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	155	447	0	ENST00000264731.3:c.1046G>A	p.Gly349Glu	p.G349E	ENST00000264731	NM_003722.4	349	gGa/gAa																																																																														
IL7R	0	MSKCC	GRCh37	5	35873748	35873748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	140	331	0	ENST00000303115.3:c.704C>T	p.Ser235Leu	p.S235L	ENST00000303115	NM_002185.3	235	tCa/tTa																																																																														
SOX17	0	MSKCC	GRCh37	8	55372152	55372152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	247	463	0	ENST00000297316.4:c.842C>T	p.Pro281Leu	p.P281L	ENST00000297316	NM_022454.3	281	cCc/cTc																																																																														
PREX2	0	MSKCC	GRCh37	8	68995569	68995569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	262	599	1	ENST00000288368.4:c.1973C>T	p.Ser658Leu	p.S658L	ENST00000288368	NM_024870.2	658	tCg/tTg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42852443	42852443	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139092674		P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	263	541	0	ENST00000398585.3:c.643G>A	p.Glu215Lys	p.E215K	ENST00000398585	NM_001135099.1	215	Gag/Aag																																																																														
ATRX	0	MSKCC	GRCh37	X	76813089	76813089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	243	576	0	ENST00000373344.5:c.6532C>T	p.Arg2178Trp	p.R2178W	ENST00000373344	NM_000489.3	2178	Cgg/Tgg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118359404	118359404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	212	439	0	ENST00000534358.1:c.4408C>T	p.Gln1470Ter	p.Q1470*	ENST00000534358	NM_005933.3	1470	Cag/Tag																																																																														
AKT3	0	MSKCC	GRCh37	1	243716070	243716070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	204	531	1	ENST00000263826.5:c.1124C>T	p.Ser375Leu	p.S375L	ENST00000263826	NM_005465.4	375	tCa/tTa																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166436	118166436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	150	321	0	ENST00000369448.3:c.946G>A	p.Glu316Lys	p.E316K	ENST00000369448	NM_017709.3	316	Gag/Aag																																																																														
PRDM14	0	MSKCC	GRCh37	8	70970945	70970945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	295	703	2	ENST00000276594.2:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000276594	NM_024504.3	439	cGa/cAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056226	27056226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	295	556	0	ENST00000324856.7:c.1222C>T	p.Pro408Ser	p.P408S	ENST00000324856	NM_006015.4	408	Ccg/Tcg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100857	27100857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	236	436	0	ENST00000324856.7:c.4139C>T	p.Pro1380Leu	p.P1380L	ENST00000324856	NM_006015.4	1380	cCt/cTt																																																																														
MYCL1	0	MSKCC	GRCh37	1	40363400	40363400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	280	636	0	ENST00000397332.2:c.829G>A	p.Glu277Lys	p.E277K	ENST00000397332	NM_001033082.2	277	Gaa/Aaa																																																																														
MPL	0	MSKCC	GRCh37	1	43814658	43814658	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	210	418	0	ENST00000372470.3:c.1453A>C	p.Thr485Pro	p.T485P	ENST00000372470	NM_005373.2	485	Acc/Ccc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45797121	45797122	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	340	705	0	ENST00000372115.3:c.1251_1252delinsTT	p.Pro418Ser	p.P418S	ENST00000372115	NM_001048171.1	417	ctCCca/ctTTca																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120506378	120506379	+	missense_variant	Missense_Mutation	DNP	AG	AG	CA			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	261	558	1	ENST00000256646.2:c.1733_1734delinsTG	p.Pro578Leu	p.P578L	ENST00000256646	NM_024408.3	578	cCT/cTG																																																																														
RFWD2	0	MSKCC	GRCh37	1	176015432	176015432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	115	410	0	ENST00000367669.3:c.1306T>G	p.Phe436Val	p.F436V	ENST00000367669	NM_022457.5	436	Ttt/Gtt																																																																														
CDC73	0	MSKCC	GRCh37	1	193119441	193119441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	181	431	0	ENST00000367435.3:c.836C>T	p.Thr279Ile	p.T279I	ENST00000367435	NM_024529.4	279	aCt/aTt																																																																														
RET	0	MSKCC	GRCh37	10	43604641	43604641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	247	551	0	ENST00000355710.3:c.1226C>T	p.Ser409Phe	p.S409F	ENST00000355710	NM_020975.4	409	tCc/tTc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114724348	114724348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	231	513	0	ENST00000543371.1:c.415G>T	p.Ala139Ser	p.A139S	ENST00000543371	NM_001198531.1	139	Gcg/Tcg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123239535	123239535	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	399	832	1	ENST00000358487.5:c.2302G>A	p.Glu768Lys	p.E768K	ENST00000358487	NM_000141.4	768	Gaa/Aaa																																																																														
RRAS2	0	MSKCC	GRCh37	11	14316076	14316076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	159	289	0	ENST00000256196.4:c.349C>T	p.Arg117Cys	p.R117C	ENST00000256196		117	Cgt/Tgt																																																																														
SESN3	0	MSKCC	GRCh37	11	94911911	94911911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	265	631	0	ENST00000536441.1:c.1019G>A	p.Arg340Lys	p.R340K	ENST00000536441	NM_144665.3	340	aGa/aAa																																																																														
ATM	0	MSKCC	GRCh37	11	108163465	108163466	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	258	534	0	ENST00000278616.4:c.4556_4557del	p.Val1519AspfsTer11	p.V1519Dfs*11	ENST00000278616	NM_000051.3	1519	gTT/g																																																																														
KMT2A	0	MSKCC	GRCh37	11	118369169	118369169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	213	442	1	ENST00000534358.1:c.5887C>T	p.Arg1963Ter	p.R1963*	ENST00000534358	NM_005933.3	1963	Cga/Tga																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374532	118374532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	151	344	0	ENST00000534358.1:c.7925C>T	p.Ser2642Phe	p.S2642F	ENST00000534358	NM_005933.3	2642	tCc/tTc																																																																														
RAD52	0	MSKCC	GRCh37	12	1039291	1039291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	260	607	0	ENST00000358495.3:c.206A>G	p.His69Arg	p.H69R	ENST00000358495	NM_134424.2	69	cAt/cGt																																																																														
ARID2	0	MSKCC	GRCh37	12	46287504	46287505	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	201	402	1	ENST00000334344.6:c.5363_5363+1delinsAA		p.X1788_splice	ENST00000334344	NM_152641.2	1788																																																																															
PTPN11	0	MSKCC	GRCh37	12	112926851	112926852	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	315	713	2	ENST00000351677.2:c.1471_1472delinsTT	p.Pro491Phe	p.P491F	ENST00000351677	NM_002834.3	491	CCc/TTc																																																																														
CDK8	0	MSKCC	GRCh37	13	26911748	26911748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	135	398	0	ENST00000381527.3:c.173G>A	p.Gly58Glu	p.G58E	ENST00000381527	NM_001260.1	58	gGg/gAg																																																																														
RB1	0	MSKCC	GRCh37	13	48953773	48953773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	93	260	0	ENST00000267163.4:c.1376C>T	p.Ser459Phe	p.S459F	ENST00000267163	NM_000321.2	459	tCc/tTc																																																																														
IRS2	0	MSKCC	GRCh37	13	110436407	110436407	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	170	615	0	ENST00000375856.3:c.1994G>C	p.Ser665Thr	p.S665T	ENST00000375856	NM_003749.2	665	aGt/aCt																																																																														
MGA	0	MSKCC	GRCh37	15	42057125	42057125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	165	568	0	ENST00000219905.7:c.7786C>T	p.Leu2596Phe	p.L2596F	ENST00000219905	NM_001164273.1	2596	Ctt/Ttt																																																																														
BLM	0	MSKCC	GRCh37	15	91333954	91333954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	250	548	0	ENST00000355112.3:c.2899C>T	p.Pro967Ser	p.P967S	ENST00000355112	NM_000057.2	967	Cct/Tct																																																																														
TSC2	0	MSKCC	GRCh37	16	2100431	2100431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	285	509	1	ENST00000219476.3:c.169C>T	p.Arg57Cys	p.R57C	ENST00000219476	NM_000548.3	57	Cgc/Tgc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822283	72822284	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	294	691	1	ENST00000268489.5:c.9891_9892delinsAA	p.Asp3298Asn	p.D3298N	ENST00000268489	NM_006885.3	3297	tcGGac/tcAAac																																																																														
TP53	0	MSKCC	GRCh37	17	7579478	7579480	+	frameshift_variant	Frame_Shift_Del	DEL	GCA	GCA	AC			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	284	661	2	ENST00000269305.4:c.207_209delinsGT	p.Ala70PhefsTer53	p.A70Ffs*53	ENST00000269305	NM_001126112.2	69	gcTGCt/gcGTt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78867528	78867528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	277	561	0	ENST00000306801.3:c.2264C>T	p.Ser755Phe	p.S755F	ENST00000306801	NM_020761.2	755	tCc/tTc																																																																														
MALT1	0	MSKCC	GRCh37	18	56402487	56402487	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	175	349	0	ENST00000348428.3:c.1529T>G	p.Ile510Ser	p.I510S	ENST00000348428	NM_006785.3	510	aTc/aGc																																																																														
STK11	0	MSKCC	GRCh37	19	1206946	1206946	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	242	563	0	ENST00000326873.7:c.34T>C	p.Phe12Leu	p.F12L	ENST00000326873	NM_000455.4	12	Ttc/Ctc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11094885	11094885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	527	670	0	ENST00000344626.4:c.58C>T	p.Pro20Ser	p.P20S	ENST00000344626	NM_003072.3	20	Cct/Tct																																																																														
BRD4	0	MSKCC	GRCh37	19	15375438	15375438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	302	594	0	ENST00000263377.2:c.989C>T	p.Pro330Leu	p.P330L	ENST00000263377	NM_058243.2	330	cCt/cTt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210921	36210922	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	282	749	2	ENST00000222270.7:c.672_673delinsTA	p.Gly225Arg	p.G225R	ENST00000222270	NM_014727.1	224	ccAGga/ccTAga																																																																														
AXL	0	MSKCC	GRCh37	19	41744044	41744044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	288	632	1	ENST00000301178.4:c.979G>A	p.Glu327Lys	p.E327K	ENST00000301178	NM_021913.4	327	Gag/Aag																																																																														
AXL	0	MSKCC	GRCh37	19	41758775	41758775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	295	668	0	ENST00000301178.4:c.1829G>A	p.Arg610Gln	p.R610Q	ENST00000301178	NM_021913.4	610	cGa/cAa																																																																														
CIC	0	MSKCC	GRCh37	19	42793469	42793469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	269	653	1	ENST00000575354.2:c.1271C>T	p.Ser424Phe	p.S424F	ENST00000575354	NM_015125.3	424	tCt/tTt																																																																														
POLD1	0	MSKCC	GRCh37	19	50902140	50902140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	219	563	1	ENST00000440232.2:c.32C>T	p.Pro11Leu	p.P11L	ENST00000440232	NM_002691.3	11	cCc/cTc																																																																														
PMS1	0	MSKCC	GRCh37	2	190718777	190718777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	211	290	0	ENST00000441310.2:c.935C>T	p.Pro312Leu	p.P312L	ENST00000441310	NM_000534.4	312	cCa/cTa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248768	212248768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	114	249	0	ENST00000342788.4:c.3499G>A	p.Glu1167Lys	p.E1167K	ENST00000342788	NM_005235.2	1167	Gag/Aag																																																																														
INHA	0	MSKCC	GRCh37	2	220440012	220440012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	406	798	0	ENST00000243786.2:c.865C>T	p.His289Tyr	p.H289Y	ENST00000243786	NM_002191.3	289	Cac/Tac																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713398	40713398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	255	584	0	ENST00000373198.4:c.4117C>T	p.Leu1373Phe	p.L1373F	ENST00000373198	NM_133170.3	1373	Ctc/Ttc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62305312	62305312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	327	760	1	ENST00000508582.2:c.857C>T	p.Ser286Leu	p.S286L	ENST00000508582		286	tCg/tTg																																																																														
PPARG	0	MSKCC	GRCh37	3	12458329	12458329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	240	591	0	ENST00000287820.6:c.946C>T	p.Arg316Cys	p.R316C	ENST00000287820	NM_015869.4	316	Cgc/Tgc																																																																														
SETD2	0	MSKCC	GRCh37	3	47162889	47162890	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	166	399	1	ENST00000409792.3:c.3236_3237delinsTT	p.Pro1079Leu	p.P1079L	ENST00000409792	NM_014159.6	1079	cCC/cTT																																																																														
MST1R	0	MSKCC	GRCh37	3	49932976	49932976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	259	632	1	ENST00000296474.3:c.2968C>T	p.Pro990Ser	p.P990S	ENST00000296474	NM_002447.2	990	Cct/Tct																																																																														
MST1R	0	MSKCC	GRCh37	3	49936329	49936329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	236	542	1	ENST00000296474.3:c.1519G>A	p.Asp507Asn	p.D507N	ENST00000296474	NM_002447.2	507	Gac/Aac																																																																														
GSK3B	0	MSKCC	GRCh37	3	119595288	119595288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	126	339	0	ENST00000316626.5:c.881C>T	p.Pro294Leu	p.P294L	ENST00000316626		294	cCt/cTt																																																																														
KDR	0	MSKCC	GRCh37	4	55961822	55961822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	247	423	0	ENST00000263923.4:c.2739G>A	p.Met913Ile	p.M913I	ENST00000263923	NM_002253.2	913	atG/atA																																																																														
TERT	0	MSKCC	GRCh37	5	1264619	1264619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	311	646	0	ENST00000310581.5:c.2743G>A	p.Gly915Ser	p.G915S	ENST00000310581	NM_198253.2	915	Ggt/Agt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526597	31526597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	247	448	1	ENST00000344624.3:c.443C>T	p.Pro148Leu	p.P148L	ENST00000344624		148	cCt/cTt																																																																														
APC	0	MSKCC	GRCh37	5	112176362	112176362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	141	278	0	ENST00000257430.4:c.5071C>T	p.Pro1691Ser	p.P1691S	ENST00000257430	NM_000038.5	1691	Cct/Tct																																																																														
APC	0	MSKCC	GRCh37	5	112176861	112176861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	161	314	0	ENST00000257430.4:c.5570C>T	p.Ser1857Leu	p.S1857L	ENST00000257430	NM_000038.5	1857	tCa/tTa																																																																														
FLT4	0	MSKCC	GRCh37	5	180057250	180057250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	285	671	0	ENST00000261937.6:c.488C>T	p.Pro163Leu	p.P163L	ENST00000261937	NM_182925.4	163	cCc/cTc																																																																														
ROS1	0	MSKCC	GRCh37	6	117710821	117710821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	211	377	0	ENST00000368508.3:c.1451G>A	p.Gly484Asp	p.G484D	ENST00000368508	NM_002944.2	484	gGc/gAc																																																																														
INHBA	0	MSKCC	GRCh37	7	41730086	41730086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	204	450	0	ENST00000242208.4:c.443C>T	p.Ser148Leu	p.S148L	ENST00000242208	NM_002192.2	148	tCa/tTa																																																																														
BRAF	0	MSKCC	GRCh37	7	140481412	140481412	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	176	451	0	ENST00000288602.6:c.1396G>C	p.Gly466Arg	p.G466R	ENST00000288602	NM_004333.4	466	Gga/Cga																																																																														
PREX2	0	MSKCC	GRCh37	8	69031669	69031669	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	190	349	0	ENST00000288368.4:c.3424G>A	p.Asp1142Asn	p.D1142N	ENST00000288368	NM_024870.2	1142	Gat/Aat																																																																														
JAK2	0	MSKCC	GRCh37	9	5054612	5054612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	133	344	0	ENST00000381652.3:c.664C>T	p.His222Tyr	p.H222Y	ENST00000381652	NM_004972.3	222	Cat/Tat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8449764	8449764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	257	497	0	ENST00000356435.5:c.3949G>A	p.Asp1317Asn	p.D1317N	ENST00000356435		1317	Gac/Aac																																																																														
NTRK2	0	MSKCC	GRCh37	9	87366934	87366934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	323	647	0	ENST00000277120.3:c.1330G>A	p.Gly444Arg	p.G444R	ENST00000277120		444	Gga/Aga																																																																														
ARAF	0	MSKCC	GRCh37	X	47430809	47430809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	78	633	0	ENST00000377045.4:c.1774G>A	p.Asp592Asn	p.D592N	ENST00000377045	NM_001654.4	592	Gat/Aat																																																																														
AMER1	0	MSKCC	GRCh37	X	63410077	63410077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	94	625	0	ENST00000330258.3:c.3090G>A	p.Met1030Ile	p.M1030I	ENST00000330258	NM_152424.3	1030	atG/atA																																																																														
ATRX	0	MSKCC	GRCh37	X	76938788	76938788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	60	574	0	ENST00000373344.5:c.1960C>G	p.Arg654Gly	p.R654G	ENST00000373344	NM_000489.3	654	Cga/Gga																																																																														
STAG2	0	MSKCC	GRCh37	X	123195705	123195705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	68	599	0	ENST00000218089.9:c.1619G>A	p.Gly540Glu	p.G540E	ENST00000218089	NM_001042749.1	540	gGa/gAa																																																																														
PRDM1	0	MSKCC	GRCh37	6	106552891	106552891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	125	819	0	ENST00000369096.4:c.856C>T	p.Arg286Cys	p.R286C	ENST00000369096	NM_001198.3	286	Cgt/Tgt																																																																														
JAK1	0	MSKCC	GRCh37	1	65303621	65303621	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	43	516	0	ENST00000342505.4:c.3134T>G	p.Val1045Gly	p.V1045G	ENST00000342505	NM_002227.2	1045	gTg/gGg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40709551	40709551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	57	537	0	ENST00000373198.4:c.4351G>A	p.Glu1451Lys	p.E1451K	ENST00000373198	NM_133170.3	1451	Gag/Aag																																																																														
ELF3	0	MSKCC	GRCh37	1	201983136	201983136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	44	612	0	ENST00000359651.3:c.985C>G	p.Leu329Val	p.L329V	ENST00000359651		329	Ctg/Gtg																																																																														
RECQL	0	MSKCC	GRCh37	12	21636352	21636352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	65	665	0	ENST00000421138.2:c.658G>A	p.Glu220Lys	p.E220K	ENST00000421138		220	Gaa/Aaa																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4099298	4099298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	104	716	0	ENST00000262948.5:c.820G>C	p.Glu274Gln	p.E274Q	ENST00000262948	NM_030662.3	274	Gag/Cag																																																																														
MST1R	0	MSKCC	GRCh37	3	49927382	49927382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	112	674	0	ENST00000296474.3:c.3922C>A	p.Gln1308Lys	p.Q1308K	ENST00000296474	NM_002447.2	1308	Cag/Aag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89448529	89448529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	40	460	0	ENST00000336596.2:c.1493G>A	p.Ser498Asn	p.S498N	ENST00000336596	NM_005233.5	498	aGc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	260	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	156	365	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	412	742	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	267	533	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	107	554	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151843748	151843748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	127	456	0	ENST00000262189.6:c.13967C>T	p.Ala4656Val	p.A4656V	ENST00000262189	NM_170606.2	4656	gCg/gTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16260375	16260375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	241	504	0	ENST00000375759.3:c.7640C>T	p.Thr2547Ile	p.T2547I	ENST00000375759	NM_015001.2	2547	aCa/aTa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114799801	114799801	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	171	480	0	ENST00000543371.1:c.468G>A	p.Trp156Ter	p.W156*	ENST00000543371	NM_001198531.1	156	tgG/tgA																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857958	9857958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140536516		P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	277	618	2	ENST00000330684.3:c.3443C>T	p.Pro1148Leu	p.P1148L	ENST00000330684	NM_001134407.1	1148	cCg/cTg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967216	93967216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026011-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	89	516	0	ENST00000369303.4:c.2136G>T	p.Glu712Asp	p.E712D	ENST00000369303	NM_004440.3	712	gaG/gaT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0026012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	41	584	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0026012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	42	408	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
CDH1	0	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0026012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	80	447	0	ENST00000261769.5:c.1565+1G>T		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																															
TP53	0	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	502	583	1	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																														
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0026013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	76	400	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0026013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	226	264	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821541	72821541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	201	324	0	ENST00000268489.5:c.10634G>C	p.Ser3545Thr	p.S3545T	ENST00000268489	NM_006885.3	3545	aGt/aCt																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395654	45395667	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTCATCCTTTT	TACTTCATCCTTTT	-			P-0026013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	220	392	1	ENST00000262160.6:c.467_480del	p.Lys156MetfsTer11	p.K156Mfs*11	ENST00000262160	NM_005901.5	156	aAAAAGGATGAAGTA/a																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18266939	18266980	+	inframe_deletion	In_Frame_Del	DEL	GCCCGGCCCGGCCCTCGCCCACGGGGCCCCCGCCCACTGCCC	GCCCGGCCCGGCCCTCGCCCACGGGGCCCCCGCCCACTGCCC	-			P-0026013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	225	242	0	ENST00000222254.8:c.253_294del	p.Gly87_Pro100del	p.G87_P100del	ENST00000222254	NM_005027.3	84	GCCCGGCCCGGCCCTCGCCCACGGGGCCCCCGCCCACTGCCC/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	140	525	0				ENST00000310581	NM_198253.2																																																																																
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	839	560	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858517	9858517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	154	473	0	ENST00000330684.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000330684	NM_001134407.1	962	Gaa/Aaa																																																																														
MYCN	0	MSKCC	GRCh37	2	16086157	16086157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	117	550	0	ENST00000281043.3:c.1333G>A	p.Glu445Lys	p.E445K	ENST00000281043	NM_005378.4	445	Gaa/Aaa																																																																														
FLT4	0	MSKCC	GRCh37	5	180056291	180056291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199942873		P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	268	738	0	ENST00000261937.6:c.953G>A	p.Arg318Gln	p.R318Q	ENST00000261937	NM_182925.4	318	cGa/cAa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873008	134873008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201012406		P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	99	521	0	ENST00000398015.3:c.1312C>T	p.Pro438Ser	p.P438S	ENST00000398015	NM_004441.4	438	Ccc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578473	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGGGTGCCGGG	CGCGGGTGCCGGG	-			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	383	739	0	ENST00000269305.4:c.457_469del	p.Pro153SerfsTer13	p.P153Sfs*13	ENST00000269305	NM_001126112.2	153	CCCGGCACCCGCGtc/tc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78429758	78429758	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	121	305	0	ENST00000370768.2:c.1030C>T	p.Arg344Ter	p.R344*	ENST00000370768	NM_003902.3	344	Cga/Tga																																																																														
TET1	0	MSKCC	GRCh37	10	70405491	70405491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	213	532	1	ENST00000373644.4:c.3005C>T	p.Ser1002Leu	p.S1002L	ENST00000373644	NM_030625.2	1002	tCa/tTa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485939	8485939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	148	405	0	ENST00000356435.5:c.2878G>A	p.Asp960Asn	p.D960N	ENST00000356435		960	Gat/Aat																																																																														
MPL	0	MSKCC	GRCh37	1	43805683	43805683	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	163	513	0	ENST00000372470.3:c.739C>T	p.Gln247Ter	p.Q247*	ENST00000372470	NM_005373.2	247	Cag/Tag																																																																														
CDC42	0	MSKCC	GRCh37	1	22413289	22413289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	47	99	0	ENST00000344548.3:c.416C>T	p.Pro139Leu	p.P139L	ENST00000344548	NM_001039802.1	139	cCa/cTa																																																																														
ATM	0	MSKCC	GRCh37	11	108122668	108122668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	163	582	0	ENST00000278616.4:c.1712C>T	p.Ser571Phe	p.S571F	ENST00000278616	NM_000051.3	571	tCt/tTt																																																																														
CCND2	0	MSKCC	GRCh37	12	4385315	4385315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	188	372	0	ENST00000261254.3:c.340G>A	p.Glu114Lys	p.E114K	ENST00000261254	NM_001759.3	114	Gag/Aag																																																																														
TBX3	0	MSKCC	GRCh37	12	115118845	115118845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	86	412	0	ENST00000257566.3:c.496C>T	p.His166Tyr	p.H166Y	ENST00000257566	NM_016569.3	166	Cac/Tac																																																																														
IRS2	0	MSKCC	GRCh37	13	110435842	110435843	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	150	481	0	ENST00000375856.3:c.2558_2559delinsTT	p.Ala853Val	p.A853V	ENST00000375856	NM_003749.2	853	gCC/gTT																																																																														
MGA	0	MSKCC	GRCh37	15	42005440	42005440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	320	680	0	ENST00000219905.7:c.3176C>T	p.Ser1059Phe	p.S1059F	ENST00000219905	NM_001164273.1	1059	tCc/tTc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748645	43748645	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs149567425		P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	248	788	0	ENST00000382044.4:c.2161A>G	p.Met721Val	p.M721V	ENST00000382044	NM_001141980.1	721	Atg/Gtg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88428931	88428931	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	103	535	0	ENST00000360948.2:c.2169G>A	p.Trp723Ter	p.W723*	ENST00000360948	NM_001012338.2	723	tgG/tgA																																																																														
PLCG2	0	MSKCC	GRCh37	16	81953235	81953235	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199516791		P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	32	327	0	ENST00000359376.3:c.2201C>T	p.Pro734Leu	p.P734L	ENST00000359376	NM_002661.3	734	cCc/cTc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350409	89350409	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	98	756	0	ENST00000301030.4:c.2541T>G	p.Asp847Glu	p.D847E	ENST00000301030	NM_001256183.1	847	gaT/gaG																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15280923	15280923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	270	680	0	ENST00000263388.2:c.5173G>A	p.Glu1725Lys	p.E1725K	ENST00000263388	NM_000435.2	1725	Gag/Aag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096471	178096471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	127	360	0	ENST00000397062.3:c.860C>T	p.Ser287Phe	p.S287F	ENST00000397062	NM_006164.4	287	tCt/tTt																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186505643	186505644	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	110	397	1	ENST00000323963.5:c.1051_1052delinsTT	p.Pro351Phe	p.P351F	ENST00000323963		351	CCt/TTt																																																																														
NSD1	0	MSKCC	GRCh37	5	176637953	176637955	+	frameshift_variant	Frame_Shift_Del	DEL	CAT	CAT	TA			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	205	718	0	ENST00000439151.2:c.2553_2555delinsTA	p.Ile852LysfsTer6	p.I852Kfs*6	ENST00000439151	NM_022455.4	851	gaCATa/gaTAa																																																																														
HIST1H3A	0	MSKCC	GRCh37	6	26020815	26020816	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	77	255	2	ENST00000357647.3:c.98_99delinsTT	p.Thr33Ile	p.T33I	ENST00000357647	NM_003529.2	33	aCC/aTT																																																																														
CARD11	0	MSKCC	GRCh37	7	2962956	2962956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	136	699	0	ENST00000396946.4:c.1952C>T	p.Pro651Leu	p.P651L	ENST00000396946	NM_032415.4	651	cCt/cTt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518415	8518415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	42	217	0	ENST00000356435.5:c.976C>T	p.Pro326Ser	p.P326S	ENST00000356435		326	Cca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7578376	7578379	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0007343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			62	525	523	0	ENST00000269305.4:c.551_554delATAG	p.Asp184AlafsTer62	p.D184Afs*62	ENST00000269305	NM_001126112.2	184	gATAGc/gc																																																																														
JAK1	0	MSKCC	GRCh37	1	65303679	65303679	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			70	715	579	1	ENST00000342505.4:c.3076A>T	p.Lys1026Ter	p.K1026*	ENST00000342505	NM_002227.2	1026	Aaa/Taa																																																																														
PTEN	0	MSKCC	GRCh37	10	89720857	89721263	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTTTCTCCAAATTTTAAGGTCAGTTAAATTAAACATTTTGTGGGGGTTGTTGACTTGTATGTATGTGATGTGTGTTTAATTCTAGGAGTACAGCTGATGAAGAACTTGCTTGACAAGTTTTTAACTTATGTATTATTTCGAAGCAGTGTTTACGTAGCAGTAACATGAAAGTTTCTAATAAAATACCCAATGTACACAGCGTCAAAAAAGCTGCATTTTTCCTTTTCCTAATTCTTCGTTGTTTGCTGAAATCTGGGGCAAAGGTGCGGGAGGGGGCTAAATGACTGGGATATGAAGTAGGAATGGGAGAGGAAAGAAATAGATGGGAACTCAGTCATTTGGGAATGATTCATATGGAATGTTTTTACTGCTTCCACTCCTGTCTGCCTTCCAATTTATTCTCAAT	CTTTTCTCCAAATTTTAAGGTCAGTTAAATTAAACATTTTGTGGGGGTTGTTGACTTGTATGTATGTGATGTGTGTTTAATTCTAGGAGTACAGCTGATGAAGAACTTGCTTGACAAGTTTTTAACTTATGTATTATTTCGAAGCAGTGTTTACGTAGCAGTAACATGAAAGTTTCTAATAAAATACCCAATGTACACAGCGTCAAAAAAGCTGCATTTTTCCTTTTCCTAATTCTTCGTTGTTTGCTGAAATCTGGGGCAAAGGTGCGGGAGGGGGCTAAATGACTGGGATATGAAGTAGGAATGGGAGAGGAAAGAAATAGATGGGAACTCAGTCATTTGGGAATGATTCATATGGAATGTTTTTACTGCTTCCACTCCTGTCTGCCTTCCAATTTATTCTCAAT	-			P-0007343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			24	221	341	0	ENST00000371953.3:c.1009_1026+389del		p.X337_splice	ENST00000371953	NM_000314.4	337																																																																															
RB1	0	MSKCC	GRCh37	13	48951062	48951091	+	inframe_deletion	In_Frame_Del	DEL	AGTGAATCCAAAAGAAAGTATACTGAAAAG	AGTGAATCCAAAAGAAAGTATACTGAAAAG	-			P-0007343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			31	281	299	0	ENST00000267163.4:c.1230_1259del	p.Asn410_Val419del	p.N410_V419del	ENST00000267163	NM_000321.2	408	acAGTGAATCCAAAAGAAAGTATACTGAAAAGa/aca																																																																														
ARAF	0	MSKCC	GRCh37	X	47430729	47430729	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007343-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			30	661	342	0	ENST00000377045.4:c.1694C>G	p.Ala565Gly	p.A565G	ENST00000377045	NM_001654.4	565	gCc/gGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	228	786	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	208	555	1	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	104	616	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			380	138	495	2	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																																																														
SOX9	0	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	68	742	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280031	66280031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	105	245	0	ENST00000273854.3:c.1658G>A	p.Arg553Gln	p.R553Q	ENST00000273854	NM_004439.5	553	cGa/cAa																																																																														
TBX3	0	MSKCC	GRCh37	12	115114205	115114205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			421	149	633	0	ENST00000257566.3:c.1012G>A	p.Glu338Lys	p.E338K	ENST00000257566	NM_016569.3	338	Gag/Aag																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11958295	11958295	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	125	398	0	ENST00000353533.5:c.205C>T	p.Gln69Ter	p.Q69*	ENST00000353533	NM_003010.3	69	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	40	749	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
PDCD1LG2	0	MSKCC	GRCh37	9	5549403	5549403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	39	701	0	ENST00000397747.3:c.430C>A	p.Gln144Lys	p.Q144K	ENST00000397747	NM_025239.3	144	Cag/Aag																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740603	58740603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	98	557	0	ENST00000305921.3:c.1508C>T	p.Ser503Leu	p.S503L	ENST00000305921	NM_003620.3	503	tCa/tTa																																																																														
SPEN	0	MSKCC	GRCh37	1	16255058	16255058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			137	256	325	0	ENST00000375759.3:c.2323G>A	p.Glu775Lys	p.E775K	ENST00000375759	NM_015001.2	775	Gag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16255592	16255592	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	284	466	1	ENST00000375759.3:c.2857G>T	p.Glu953Ter	p.E953*	ENST00000375759	NM_015001.2	953	Gag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023501	27023501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	31	634	0	ENST00000324856.7:c.607C>A	p.His203Asn	p.H203N	ENST00000324856	NM_006015.4	203	Cac/Aac																																																																														
MUTYH	0	MSKCC	GRCh37	1	45797114	45797114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	111	769	1	ENST00000372115.3:c.1259C>T	p.Thr420Met	p.T420M	ENST00000372115	NM_001048171.1	420	aCg/aTg																																																																														
GATA3	0	MSKCC	GRCh37	10	8100667	8100667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	83	680	0	ENST00000346208.3:c.641C>G	p.Ser214Trp	p.S214W	ENST00000346208		214	tCg/tGg																																																																														
KDM5A	0	MSKCC	GRCh37	12	475242	475242	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	198	647	0	ENST00000399788.2:c.395del	p.Met132ArgfsTer27	p.M132Rfs*27	ENST00000399788	NM_001042603.1	132	aTg/ag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061239	38061240	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	144	692	1	ENST00000250448.2:c.749_750delinsTT	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCC/tTT																																																																														
MGA	0	MSKCC	GRCh37	15	42019496	42019496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			493	112	599	0	ENST00000219905.7:c.3549G>A	p.Met1183Ile	p.M1183I	ENST00000219905	NM_001164273.1	1183	atG/atA																																																																														
PLCG2	0	MSKCC	GRCh37	16	81902885	81902885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	109	496	0	ENST00000359376.3:c.546C>A	p.Phe182Leu	p.F182L	ENST00000359376	NM_002661.3	182	ttC/ttA																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89341349	89341349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			227	22	633	0	ENST00000301030.4:c.7586C>A	p.Ser2529Tyr	p.S2529Y	ENST00000301030	NM_001256183.1	2529	tCc/tAc																																																																														
NF1	0	MSKCC	GRCh37	17	29664426	29664426	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	38	456	0	ENST00000358273.4:c.6468C>G	p.Phe2156Leu	p.F2156L	ENST00000358273	NM_001042492.2	2156	ttC/ttG																																																																														
RAD51C	0	MSKCC	GRCh37	17	56809902	56809902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	124	570	0	ENST00000337432.4:c.1023C>G	p.Ile341Met	p.I341M	ENST00000337432	NM_058216.2	341	atC/atG																																																																														
MSH2	0	MSKCC	GRCh37	2	47702397	47702397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	42	248	0	ENST00000233146.2:c.1993C>T	p.His665Tyr	p.H665Y	ENST00000233146	NM_000251.2	665	Cac/Tac																																																																														
SF3B1	0	MSKCC	GRCh37	2	198265002	198265002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	54	338	1	ENST00000335508.6:c.2875G>A	p.Ala959Thr	p.A959T	ENST00000335508	NM_012433.2	959	Gct/Act																																																																														
IRS1	0	MSKCC	GRCh37	2	227662301	227662301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	41	600	0	ENST00000305123.5:c.1154C>T	p.Ser385Leu	p.S385L	ENST00000305123	NM_005544.2	385	tCg/tTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845478	151845478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	81	610	0	ENST00000262189.6:c.13534C>T	p.His4512Tyr	p.H4512Y	ENST00000262189	NM_170606.2	4512	Cat/Tat																																																																														
XRCC2	0	MSKCC	GRCh37	7	152345800	152345800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	101	456	0	ENST00000359321.1:c.770C>T	p.Ser257Leu	p.S257L	ENST00000359321	NM_005431.1	257	tCa/tTa																																																																														
BCOR	0	MSKCC	GRCh37	X	39932609	39932609	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			531	85	951	0	ENST00000378444.4:c.1990G>T	p.Glu664Ter	p.E664*	ENST00000378444	NM_001123385.1	664	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020845-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	253	532	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245449	153245449	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020845-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	435	649	0	ENST00000281708.4:c.1742A>C	p.Gln581Pro	p.Q581P	ENST00000281708	NM_033632.3	581	cAg/cCg																																																																														
AMER1	0	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020845-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	336	442	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482607	56482607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020845-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			870	406	747	1	ENST00000267101.3:c.1064C>A	p.Thr355Asn	p.T355N	ENST00000267101	NM_001982.3	355	aCc/aAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578493	7578502	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGCTGCA	CACAGCTGCA	-			P-0020845-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			784	829	1148	0	ENST00000269305.4:c.428_437del	p.Val143GlyfsTer24	p.V143Gfs*24	ENST00000269305	NM_001126112.2	143	gTGCAGCTGTGg/gg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45374941	45374944	+	frameshift_variant	Frame_Shift_Del	DEL	CCAT	CCAT	-			P-0020845-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	485	581	0	ENST00000262160.6:c.899_902del	p.Asp300AlafsTer13	p.D300Afs*13	ENST00000262160	NM_005901.5	300	gATGGc/gc																																																																														
EGFR	0	MSKCC	GRCh37	7	55241726	55241726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	36	540	0	ENST00000275493.2:c.2174C>T	p.Thr725Met	p.T725M	ENST00000275493	NM_005228.3	725	aCg/aTg																																																																														
INHBA	0	MSKCC	GRCh37	7	41729604	41729604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	33	470	0	ENST00000242208.4:c.925C>T	p.Arg309Trp	p.R309W	ENST00000242208	NM_002192.2	309	Cgg/Tgg																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165896	118165896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	27	380	0	ENST00000369448.3:c.406G>A	p.Glu136Lys	p.E136K	ENST00000369448	NM_017709.3	136	Gag/Aag																																																																														
NCOR1	0	MSKCC	GRCh37	17	16046928	16046928	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	28	401	0	ENST00000268712.3:c.1165G>C	p.Glu389Gln	p.E389Q	ENST00000268712	NM_006311.3	389	Gag/Cag																																																																														
STAT3	0	MSKCC	GRCh37	17	40469211	40469211	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	41	416	0	ENST00000264657.5:c.2133C>G	p.Ile711Met	p.I711M	ENST00000264657	NM_139276.2	711	atC/atG																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	253	860	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
ETV6	0	MSKCC	GRCh37	12	11992223	11992223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	179	341	0	ENST00000396373.4:c.313C>G	p.Arg105Gly	p.R105G	ENST00000396373	NM_001987.4	105	Cga/Gga																																																																														
RB1	0	MSKCC	GRCh37	13	49030426	49030426	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	244	519	0	ENST00000267163.4:c.1901C>G	p.Ser634Ter	p.S634*	ENST00000267163	NM_000321.2	634	tCa/tGa																																																																														
RB1	0	MSKCC	GRCh37	13	49039374	49039374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	357	723	1	ENST00000267163.4:c.2359C>T	p.Arg787Ter	p.R787*	ENST00000267163	NM_000321.2	787	Cga/Tga																																																																														
IRS2	0	MSKCC	GRCh37	13	110436080	110436080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	356	783	2	ENST00000375856.3:c.2321C>T	p.Ala774Val	p.A774V	ENST00000375856	NM_003749.2	774	gCg/gTg																																																																														
CYLD	0	MSKCC	GRCh37	16	50811745	50811745	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	194	518	0	ENST00000398568.2:c.1022C>G	p.Ser341Ter	p.S341*	ENST00000398568	NM_001042412.1	341	tCa/tGa																																																																														
EP300	0	MSKCC	GRCh37	22	41558779	41558779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	271	578	0	ENST00000263253.7:c.3724G>A	p.Glu1242Lys	p.E1242K	ENST00000263253	NM_001429.3	1242	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0025891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	171	401	0				ENST00000310581	NM_198253.2																																																																																
RICTOR	0	MSKCC	GRCh37	5	38963016	38963016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	150	329	0	ENST00000357387.3:c.1528C>A	p.Gln510Lys	p.Q510K	ENST00000357387	NM_152756.3	510	Cag/Aag																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910797	29910797	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	674	625	0	ENST00000376809.5:c.337G>T	p.Glu113Ter	p.E113*	ENST00000376809	NM_002116.7	113	Gag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151927370	151927370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	34	76	0	ENST00000262189.6:c.2806G>A	p.Glu936Lys	p.E936K	ENST00000262189	NM_170606.2	936	Gaa/Aaa																																																																														
GNAS	0	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	42	535	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																														
SOX2	0	MSKCC	GRCh37	3	181430786	181430786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	43	1278	1	ENST00000325404.1:c.638C>T	p.Ser213Leu	p.S213L	ENST00000325404	NM_003106.3	213	tCg/tTg																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872913	35872913	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025893-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	39	587	0	ENST00000216797.5:c.319C>T	p.Gln107Ter	p.Q107*	ENST00000216797	NM_020529.2	107	Cag/Tag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120461061	120461061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	241	542	1	ENST00000256646.2:c.5897G>A	p.Cys1966Tyr	p.C1966Y	ENST00000256646	NM_024408.3	1966	tGc/tAc																																																																														
RB1	0	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			15	157	287	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578491	7578491	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	986	1468	0	ENST00000269305.4:c.439delG	p.Val147LeufsTer23	p.V147Lfs*23	ENST00000269305	NM_001126112.2	147	Gtt/tt																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937934	36937934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	792	1412	0	ENST00000361632.4:c.902C>A	p.Thr301Lys	p.T301K	ENST00000361632		301	aCg/aAg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391938	139391938	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	949	1529	0	ENST00000277541.6:c.6253G>T	p.Ala2085Ser	p.A2085S	ENST00000277541	NM_017617.3	2085	Gcc/Tcc																																																																														
BCOR	0	MSKCC	GRCh37	X	39933701	39933701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	447	638	0	ENST00000378444.4:c.898G>C	p.Asp300His	p.D300H	ENST00000378444	NM_001123385.1	300	Gat/Cat																																																																														
ATRX	0	MSKCC	GRCh37	X	76920178	76920202	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCCTTCTTCTGGCTCATCATCTG	TTCCCTTCTTCTGGCTCATCATCTG	-			P-0025897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	312	573	0	ENST00000373344.5:c.3875_3899del	p.Ser1292Ter	p.S1292*	ENST00000373344	NM_000489.3	1292	tCAGATGATGAGCCAGAAGAAGGGAAa/ta																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250670	26250670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	43	545	0	ENST00000446824.2:c.164A>G	p.Tyr55Cys	p.Y55C	ENST00000446824	NM_021018.2	55	tAt/tGt																																																																														
MED12	0	MSKCC	GRCh37	X	70349261	70349261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	37	372	0	ENST00000374080.3:c.3673A>C	p.Lys1225Gln	p.K1225Q	ENST00000374080		1225	Aag/Cag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	110	504	0				ENST00000310581	NM_198253.2																																																																																
SPEN	0	MSKCC	GRCh37	1	16254962	16254962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	116	456	0	ENST00000375759.3:c.2227C>G	p.Gln743Glu	p.Q743E	ENST00000375759	NM_015001.2	743	Cag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	218	773	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139410452	139410453	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	179	836	0	ENST00000277541.6:c.1649dupA	p.Tyr550Ter	p.Y550*	ENST00000277541	NM_017617.3	550	tac/taAc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44879904	44879904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	123	698	0	ENST00000377967.4:c.493C>T	p.Arg165Ter	p.R165*	ENST00000377967	NM_021140.2	165	Cga/Tga																																																																														
ASXL1	0	MSKCC	GRCh37	20	31015952	31015952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	77	457	1	ENST00000375687.4:c.274C>T	p.Arg92Cys	p.R92C	ENST00000375687	NM_015338.5	92	Cgc/Tgc																																																																														
SPEN	0	MSKCC	GRCh37	1	16254711	16254711	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	228	683	0	ENST00000375759.3:c.1976C>G	p.Ser659Ter	p.S659*	ENST00000375759	NM_015001.2	659	tCa/tGa																																																																														
SPEN	0	MSKCC	GRCh37	1	16255220	16255220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	188	583	0	ENST00000375759.3:c.2485C>T	p.His829Tyr	p.H829Y	ENST00000375759	NM_015001.2	829	Cac/Tac																																																																														
SPEN	0	MSKCC	GRCh37	1	16255868	16255868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	180	567	0	ENST00000375759.3:c.3133C>A	p.Leu1045Ile	p.L1045I	ENST00000375759	NM_015001.2	1045	Ctt/Att																																																																														
SPEN	0	MSKCC	GRCh37	1	16257128	16257128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	187	716	1	ENST00000375759.3:c.4393C>A	p.Leu1465Ile	p.L1465I	ENST00000375759	NM_015001.2	1465	Ctt/Att																																																																														
SPEN	0	MSKCC	GRCh37	1	16257581	16257581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	160	679	0	ENST00000375759.3:c.4846C>T	p.His1616Tyr	p.H1616Y	ENST00000375759	NM_015001.2	1616	Cat/Tat																																																																														
FANCA	0	MSKCC	GRCh37	16	89831471	89831471	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	121	642	1	ENST00000389301.3:c.2605C>T	p.Gln869Ter	p.Q869*	ENST00000389301	NM_000135.2	869	Cag/Tag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259652	89259653	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	100	350	0	ENST00000336596.2:c.798_799del	p.Gly267PhefsTer17	p.G267Ffs*17	ENST00000336596	NM_005233.5	266	AGa/a																																																																														
PMS2	0	MSKCC	GRCh37	7	6045555	6045557	+	missense_variant	Missense_Mutation	ONP	TCT	TCT	AAA			P-0025902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	36	374	1	ENST00000265849.7:c.129_131delinsTTT	p.Glu44Leu	p.E44L	ENST00000265849	NM_000535.5	43	gtAGAa/gtTTTa																																																																														
LATS2	0	MSKCC	GRCh37	13	21557673	21557673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	95	474	0	ENST00000382592.4:c.2172C>A	p.Asp724Glu	p.D724E	ENST00000382592	NM_014572.2	724	gaC/gaA																																																																														
MPL	0	MSKCC	GRCh37	1	43805052	43805052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs6088		P-0025904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	56	429	0	ENST00000372470.3:c.502G>A	p.Glu168Lys	p.E168K	ENST00000372470	NM_005373.2	168	Gaa/Aaa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15974962	15974962	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	18	286	0	ENST00000268712.3:c.3913A>T	p.Thr1305Ser	p.T1305S	ENST00000268712	NM_006311.3	1305	Act/Tct																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210770	2210770	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	22	413	0	ENST00000398665.3:c.1267G>T	p.Glu423Ter	p.E423*	ENST00000398665	NM_032482.2	423	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0026015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	131	463	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0026015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	472	573	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TET1	0	MSKCC	GRCh37	10	70406427	70406427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	196	544	0	ENST00000373644.4:c.3941C>T	p.Ala1314Val	p.A1314V	ENST00000373644	NM_030625.2	1314	gCa/gTa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93964515	93964515	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0026015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	121	329	0	ENST00000369303.4:c.2383-1G>A		p.X795_splice	ENST00000369303	NM_004440.3	795																																																																															
STAG2	0	MSKCC	GRCh37	X	123182889	123182889	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0026015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	174	201	0	ENST00000218089.9:c.854T>G	p.Met285Arg	p.M285R	ENST00000218089	NM_001042749.1	285	aTg/aGg																																																																														
VHL	0	MSKCC	GRCh37	3	10183797	10183797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0026017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	248	623	0	ENST00000256474.2:c.266T>A	p.Leu89His	p.L89H	ENST00000256474	NM_000551.3	89	cTc/cAc																																																																														
ELF3	0	MSKCC	GRCh37	1	201983127	201983127	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	286	587	0	ENST00000359651.3:c.976T>C	p.Tyr326His	p.Y326H	ENST00000359651		326	Tac/Cac																																																																														
MSI2	0	MSKCC	GRCh37	17	55704644	55704644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	316	569	0	ENST00000284073.2:c.707G>A	p.Ser236Asn	p.S236N	ENST00000284073	NM_138962.2	236	aGc/aAc																																																																														
BAP1	0	MSKCC	GRCh37	3	52436408	52436408	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0026017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	204	462	0	ENST00000460680.1:c.2086del	p.Ile696SerfsTer40	p.I696Sfs*40	ENST00000460680	NM_004656.3	696	Atc/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0026018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	153	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0026018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	236	604	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0026018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	110	364	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
SOX9	0	MSKCC	GRCh37	17	70119050	70119050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	167	441	0	ENST00000245479.2:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000245479	NM_000346.3	208	Cag/Tag																																																																														
RECQL	0	MSKCC	GRCh37	12	21623946	21623946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	22	145	1	ENST00000421138.2:c.1754C>T	p.Ala585Val	p.A585V	ENST00000421138		585	gCt/gTt																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66774126	66774131	+	inframe_deletion	In_Frame_Del	DEL	GTGGGG	GTGGGG	-			P-0026018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	255	878	1	ENST00000307102.5:c.602_607del	p.Arg201_Glu203delinsGln	p.R201_E203delinsQ	ENST00000307102	NM_002755.3	201	cGTGGGGag/cag																																																																														
MYOD1	0	MSKCC	GRCh37	11	17742959	17742959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	69	527	0	ENST00000250003.3:c.867C>A	p.Ser289Arg	p.S289R	ENST00000250003	NM_002478.4	289	agC/agA																																																																														
GLI1	0	MSKCC	GRCh37	12	57861939	57861939	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	58	516	1	ENST00000228682.2:c.1240C>A	p.Pro414Thr	p.P414T	ENST00000228682	NM_005269.2	414	Ccc/Acc																																																																														
FLT1	0	MSKCC	GRCh37	13	28897069	28897069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	40	398	0	ENST00000282397.4:c.2811C>A	p.His937Gln	p.H937Q	ENST00000282397	NM_002019.4	937	caC/caA																																																																														
FLT1	0	MSKCC	GRCh37	13	28959028	28959028	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	45	355	0	ENST00000282397.4:c.2110G>T	p.Glu704Ter	p.E704*	ENST00000282397	NM_002019.4	704	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	74	622	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
BARD1	0	MSKCC	GRCh37	2	215632376	215632376	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	62	284	0	ENST00000260947.4:c.1398T>G	p.His466Gln	p.H466Q	ENST00000260947	NM_000465.2	466	caT/caG																																																																														
MET	0	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0026019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	523	707	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	113	478	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	106	425	0	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88683357	88683357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	192	686	0	ENST00000372037.3:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000372037	NM_004329.2	494	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27022914	27022945	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG	CCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG	-			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	20	95	0	ENST00000324856.7:c.31_62del	p.Ser11LeufsTer89	p.S11Lfs*89	ENST00000324856	NM_006015.4	7	cCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCG/c																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88659620	88659620	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	139	521	1	ENST00000372037.3:c.403C>T	p.Gln135Ter	p.Q135*	ENST00000372037	NM_004329.2	135	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7579471	7579472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	164	665	0	ENST00000269305.4:c.215_216insG	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	ccc/ccGc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59853788	59853788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	250	511	0	ENST00000259008.2:c.2071A>G	p.Ile691Val	p.I691V	ENST00000259008	NM_032043.2	691	Att/Gtt																																																																														
PARK2	0	MSKCC	GRCh37	6	162864434	162864434	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0026020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	136	582	1	ENST00000366898.1:c.79A>T	p.Lys27Ter	p.K27*	ENST00000366898	NM_004562.2	27	Aag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	364	508	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RBM10	0	MSKCC	GRCh37	X	47045157	47045157	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	63	372	0	ENST00000329236.7:c.2164G>T	p.Glu722Ter	p.E722*	ENST00000329236	NM_001204466.1	722	Gag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106528	27106528	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	47	712	1	ENST00000324856.7:c.6139G>T	p.Glu2047Ter	p.E2047*	ENST00000324856	NM_006015.4	2047	Gag/Tag																																																																														
DDR2	0	MSKCC	GRCh37	1	162745539	162745539	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	65	491	1	ENST00000367921.3:c.1954A>G	p.Met652Val	p.M652V	ENST00000367921	NM_006182.2	652	Atg/Gtg																																																																														
ATM	0	MSKCC	GRCh37	11	108199901	108199901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	25	270	0	ENST00000278616.4:c.7243G>C	p.Ala2415Pro	p.A2415P	ENST00000278616	NM_000051.3	2415	Gct/Cct																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344074	118344074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	51	321	0	ENST00000534358.1:c.2200A>G	p.Arg734Gly	p.R734G	ENST00000534358	NM_005933.3	734	Aga/Gga																																																																														
HNF1A	0	MSKCC	GRCh37	12	121416706	121416706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	55	651	0	ENST00000257555.6:c.135C>A	p.Asp45Glu	p.D45E	ENST00000257555		45	gaC/gaA																																																																														
LATS2	0	MSKCC	GRCh37	13	21562891	21562891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	65	686	0	ENST00000382592.4:c.1028C>T	p.Pro343Leu	p.P343L	ENST00000382592	NM_014572.2	343	cCc/cTc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30066913	30066913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	39	490	2	ENST00000331968.5:c.2218C>T	p.Arg740Trp	p.R740W	ENST00000331968	NM_002742.2	740	Cgg/Tgg																																																																														
FANCA	0	MSKCC	GRCh37	16	89869669	89869669	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	58	563	0	ENST00000389301.3:c.790C>A	p.Gln264Lys	p.Q264K	ENST00000389301	NM_000135.2	264	Cag/Aag																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18278074	18278074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	83	673	0	ENST00000222254.8:c.1694C>G	p.Pro565Arg	p.P565R	ENST00000222254	NM_005027.3	565	cCg/cGg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867028	45867028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	51	472	1	ENST00000391945.4:c.1091G>T	p.Arg364Leu	p.R364L	ENST00000391945	NM_000400.3	364	cGc/cTc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024236	31024236	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	54	472	0	ENST00000375687.4:c.3721G>T	p.Glu1241Ter	p.E1241*	ENST00000375687	NM_015338.5	1241	Gaa/Taa																																																																														
PTP4A1	0	MSKCC	GRCh37	6	64288920	64288920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	52	509	0	ENST00000370651.3:c.316G>T	p.Ala106Ser	p.A106S	ENST00000370651	NM_003463.4	106	Gca/Tca																																																																														
ARID1B	0	MSKCC	GRCh37	6	157521935	157521935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	38	497	0	ENST00000346085.5:c.4207A>G	p.Met1403Val	p.M1403V	ENST00000346085	NM_020732.3	1403	Atg/Gtg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522200	157522201	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0026029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	64	471	0	ENST00000346085.5:c.4472_4473insT	p.Gly1492ArgfsTer18	p.G1492Rfs*18	ENST00000346085	NM_020732.3	1491	cca/ccTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0025601-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			609	699	532	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025601-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			102	487	537	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910387	29910392	+	inframe_deletion	In_Frame_Del	DEL	GACCCA	GACCCA	-			P-0025601-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1480	237	771	0	ENST00000376809.5:c.61_66del	p.Gln21_Thr22del	p.Q21_T22del	ENST00000376809	NM_002116.7	19	ctGACCCAg/ctg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778894	3778894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025601-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			888	93	372	3	ENST00000262367.5:c.6154C>T	p.Arg2052Trp	p.R2052W	ENST00000262367	NM_004380.2	2052	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106607	27106607	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	CCAACTGCCCC			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	132	417	0	ENST00000324856.7:c.6218delinsCCAACTGCCCC	p.Leu2073ProfsTer29	p.L2073Pfs*29	ENST00000324856	NM_006015.4	2073	cTa/cCCAACTGCCCCa																																																																														
ATM	0	MSKCC	GRCh37	11	108141986	108141986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	190	389	1	ENST00000278616.4:c.2930G>A	p.Cys977Tyr	p.C977Y	ENST00000278616	NM_000051.3	977	tGt/tAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	447	520	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RB1	0	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	170	318	0	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																															
SOX9	0	MSKCC	GRCh37	17	70117858	70117858	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	146	322	1	ENST00000245479.2:c.326T>C	p.Met109Thr	p.M109T	ENST00000245479	NM_000346.3	109	aTg/aCg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119717	70119717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	280	495	0	ENST00000245479.2:c.723del	p.Thr243ProfsTer10	p.T243Pfs*10	ENST00000245479	NM_000346.3	240	aCc/ac																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	165	310	1	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																														
CARM1	0	MSKCC	GRCh37	19	11027413	11027413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	278	507	4	ENST00000327064.4:c.980G>A	p.Arg327Gln	p.R327Q	ENST00000327064	NM_199141.1	327	cGa/cAa																																																																														
APC	0	MSKCC	GRCh37	5	112173393	112173394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	156	313	2	ENST00000257430.4:c.2107dup	p.Ala703GlyfsTer3	p.A703Gfs*3	ENST00000257430	NM_000038.5	701	atg/atGg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	82	265	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
PRDM1	0	MSKCC	GRCh37	6	106552891	106552891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	296	694	2	ENST00000369096.4:c.856C>T	p.Arg286Cys	p.R286C	ENST00000369096	NM_001198.3	286	Cgt/Tgt																																																																														
CARD11	0	MSKCC	GRCh37	7	2962849	2962849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	249	511	1	ENST00000396946.4:c.2059G>A	p.Ala687Thr	p.A687T	ENST00000396946	NM_032415.4	687	Gcg/Acg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0025833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	80	655	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266513	198266513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	44	462	0	ENST00000335508.6:c.2323C>G	p.Arg775Gly	p.R775G	ENST00000335508	NM_012433.2	775	Cga/Gga																																																																														
UPF1	0	MSKCC	GRCh37	19	18972906	18972906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	132	741	0	ENST00000262803.5:c.2545G>T	p.Gly849Cys	p.G849C	ENST00000262803	NM_002911.3	849	Ggc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0025835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	30	249	0				ENST00000310581	NM_198253.2																																																																																
BAP1	0	MSKCC	GRCh37	3	52441261	52441261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	82	590	0	ENST00000460680.1:c.509T>G	p.Phe170Cys	p.F170C	ENST00000460680	NM_004656.3	170	tTt/tGt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52685809	52685809	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0025835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	102	537	0	ENST00000394830.3:c.663T>A	p.Tyr221Ter	p.Y221*	ENST00000394830	NM_018313.4	221	taT/taA																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	423	748	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974744	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0025836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	95	214	0	ENST00000304494.5:c.52_83del	p.Thr18AlafsTer15	p.T18Afs*15	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTg/g																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974744	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0025836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	95	214	0	ENST00000304494.5:c.52_83del	p.Thr18AlafsTer15	p.T18Afs*15	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTg/g																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0025838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	417	731	1	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9892194	9892194	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	238	580	0	ENST00000330684.3:c.2296C>T	p.Gln766Ter	p.Q766*	ENST00000330684	NM_001134407.1	766	Cag/Tag																																																																														
ERCC3	0	MSKCC	GRCh37	2	128044521	128044521	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	30	443	0	ENST00000285398.2:c.1100C>G	p.Ser367Ter	p.S367*	ENST00000285398	NM_000122.1	367	tCa/tGa																																																																														
TAP2	0	MSKCC	GRCh37	6	32805728	32805728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	260	521	0	ENST00000374899.4:c.283G>T	p.Ala95Ser	p.A95S	ENST00000374899	NM_018833.2	95	Gct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	191	514	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BCOR	0	MSKCC	GRCh37	X	39923059	39923059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	141	517	0	ENST00000378444.4:c.3649C>T	p.Arg1217Ter	p.R1217*	ENST00000378444	NM_001123385.1	1217	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0025840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	235	475	1	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
CDKN2A	0	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0025840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	101	350	0	ENST00000304494.5:c.149A>C	p.Gln50Pro	p.Q50P	ENST00000304494	NM_000077.4	50	cAg/cCg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0025840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	101	350	0	ENST00000304494.5:c.149A>C	p.Gln50Pro	p.Q50P	ENST00000304494	NM_000077.4	50	cAg/cCg																																																																														
PAX5	0	MSKCC	GRCh37	9	37002760	37002761	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0025840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	72	331	1	ENST00000358127.4:c.488_489delinsTT	p.Ser163Phe	p.S163F	ENST00000358127	NM_001280556.1	163	tCC/tTT																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	162	540	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	190	589	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678456	88678456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	159	575	0	ENST00000360948.2:c.1080G>T	p.Glu360Asp	p.E360D	ENST00000360948	NM_001012338.2	360	gaG/gaT																																																																														
FANCA	0	MSKCC	GRCh37	16	89849315	89849315	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	165	534	0	ENST00000389301.3:c.1578A>T	p.Glu526Asp	p.E526D	ENST00000389301	NM_000135.2	526	gaA/gaT																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520328	176520328	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200070761		P-0025864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1202	205	540	0	ENST00000292408.4:c.1247G>A	p.Arg416Gln	p.R416Q	ENST00000292408	NM_213647.1	416	cGa/cAa																																																																														
SPEN	0	MSKCC	GRCh37	1	16264306	16264306	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0025864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	472	389	0	ENST00000375759.3:c.10510-1G>T		p.X3504_splice	ENST00000375759	NM_015001.2	3504																																																																															
FANCA	0	MSKCC	GRCh37	16	89858884	89858884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	192	608	1	ENST00000389301.3:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000389301	NM_000135.2	360	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	133	542	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	84	301	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																																																														
AR	0	MSKCC	GRCh37	X	66766357	66766392	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-			P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	75	38	0	ENST00000374690.3:c.1385_1420del	p.Gly462_Gly473del	p.G462_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																														
TP53	0	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	208	590	0	ENST00000269305.4:c.994-2A>G		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
ELF3	0	MSKCC	GRCh37	1	201983140	201983141	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	104	654	0	ENST00000359651.3:c.990_991dup	p.Arg331ProfsTer4	p.R331Pfs*4	ENST00000359651		330	agc/agCCc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212989544	212989544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	61	367	0	ENST00000342788.4:c.167G>T	p.Cys56Phe	p.C56F	ENST00000342788	NM_005235.2	56	tGt/tTt																																																																														
APC	0	MSKCC	GRCh37	5	112137078	112137078	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0025869-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	62	449	0	ENST00000257430.4:c.832C>T	p.Gln278Ter	p.Q278*	ENST00000257430	NM_000038.5	278	Cag/Tag																																																																														
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	77	461	0	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa																																																																														
STAT5B	0	MSKCC	GRCh37	17	40353821	40353821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	108	547	1	ENST00000293328.3:c.2299C>T	p.Arg767Trp	p.R767W	ENST00000293328	NM_012448.3	767	Cgg/Tgg																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056210	26056210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	33	389	0	ENST00000343677.2:c.447G>C	p.Lys149Asn	p.K149N	ENST00000343677	NM_005319.3	149	aaG/aaC																																																																														
ATR	0	MSKCC	GRCh37	3	142184073	142184073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	76	350	0	ENST00000350721.4:c.6907C>T	p.Leu2303Phe	p.L2303F	ENST00000350721	NM_001184.3	2303	Ctt/Ttt																																																																														
STK11	0	MSKCC	GRCh37	19	1220428	1220428	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	131	717	0	ENST00000326873.7:c.521A>C	p.His174Pro	p.H174P	ENST00000326873	NM_000455.4	174	cAc/cCc																																																																														
FH	0	MSKCC	GRCh37	1	241665755	241665755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	63	510	0	ENST00000366560.3:c.1224C>G	p.Phe408Leu	p.F408L	ENST00000366560	NM_000143.3	408	ttC/ttG																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942174	71942174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	182	726	0	ENST00000298229.2:c.1438G>C	p.Glu480Gln	p.E480Q	ENST00000298229	NM_001567.3	480	Gag/Cag																																																																														
TBX3	0	MSKCC	GRCh37	12	115118716	115118716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	134	602	0	ENST00000257566.3:c.625C>T	p.Leu209Phe	p.L209F	ENST00000257566	NM_016569.3	209	Ctc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7572934	7572934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	126	522	0	ENST00000269305.4:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000269305	NM_001126112.2	392	tCa/tTa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602934	10602934	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	141	714	0	ENST00000171111.5:c.644C>G	p.Ala215Gly	p.A215G	ENST00000171111	NM_203500.1	215	gCc/gGc																																																																														
IRS1	0	MSKCC	GRCh37	2	227662146	227662149	+	missense_variant	Missense_Mutation	ONP	CGCA	CGCA	GCAT			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	141	671	2	ENST00000305123.5:c.1306_1309delinsATGC	p.Cys436_Asp437delinsMetHis	p.C436_D437delinsMH	ENST00000305123	NM_005544.2	436	TGCGat/ATGCat																																																																														
BRAF	0	MSKCC	GRCh37	7	140481448	140481448	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	96	592	0	ENST00000288602.6:c.1360G>C	p.Asp454His	p.D454H	ENST00000288602	NM_004333.4	454	Gat/Cat																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974763	21974763	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	47	152	0	ENST00000304494.5:c.64del	p.Arg22GlyfsTer4	p.R22Gfs*4	ENST00000304494	NM_000077.4	22	Cgg/gg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974763	21974763	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	47	152	0	ENST00000304494.5:c.64del	p.Arg22GlyfsTer4	p.R22Gfs*4	ENST00000304494	NM_000077.4	22	Cgg/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	20	424	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579362	7579362	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	52	671	0	ENST00000269305.4:c.325T>G	p.Phe109Val	p.F109V	ENST00000269305	NM_001126112.2	109	Ttc/Gtc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	98	759	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0025927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	95	674	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	53	355	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59821817	59821817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	119	576	2	ENST00000259008.2:c.2233G>A	p.Ala745Thr	p.A745T	ENST00000259008	NM_032043.2	745	Gca/Aca																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266792	198266792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	109	651	0	ENST00000335508.6:c.2140G>A	p.Glu714Lys	p.E714K	ENST00000335508	NM_012433.2	714	Gaa/Aaa																																																																														
DIS3	0	MSKCC	GRCh37	13	73346025	73346025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	138	371	0	ENST00000377767.4:c.1513C>T	p.His505Tyr	p.H505Y	ENST00000377767	NM_014953.3	505	Cat/Tat																																																																														
DNMT1	0	MSKCC	GRCh37	19	10248572	10248572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	199	654	0	ENST00000340748.4:c.4181C>G	p.Ser1394Cys	p.S1394C	ENST00000340748		1394	tCc/tGc																																																																														
SETD2	0	MSKCC	GRCh37	3	47161850	47161850	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	208	373	0	ENST00000409792.3:c.4276A>T	p.Lys1426Ter	p.K1426*	ENST00000409792	NM_014159.6	1426	Aaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	22	511	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	37	687	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
RBM10	0	MSKCC	GRCh37	X	47044595	47044595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	47	810	0	ENST00000329236.7:c.1858G>T	p.Glu620Ter	p.E620*	ENST00000329236	NM_001204466.1	620	Gag/Tag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	54	370	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	54	370	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971096	21971096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	54	370	0	ENST00000304494.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	88	Gag/Aag																																																																														
NF1	0	MSKCC	GRCh37	17	29683597	29683599	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATG	ATG	TT			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	50	386	1	ENST00000358273.4:c.7735_7737delinsTT	p.Met2579LeufsTer45	p.M2579Lfs*45	ENST00000358273	NM_001042492.2	2579	ATG/TT																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739113	40739113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	24	418	1	ENST00000373198.4:c.3171G>T	p.Glu1057Asp	p.E1057D	ENST00000373198	NM_133170.3	1057	gaG/gaT																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980802	40980802	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	42	496	0	ENST00000373198.4:c.1684T>A	p.Tyr562Asn	p.Y562N	ENST00000373198	NM_133170.3	562	Tat/Aat																																																																														
PRKCI	0	MSKCC	GRCh37	3	170015170	170015170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	43	660	0	ENST00000295797.4:c.1576G>A	p.Asp526Asn	p.D526N	ENST00000295797	NM_002740.5	526	Gat/Aat																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41748270	41748270	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	39	741	0	ENST00000226382.2:c.499G>T	p.Ala167Ser	p.A167S	ENST00000226382	NM_003924.3	167	Gcc/Tcc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361226	66361226	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	27	314	0	ENST00000273854.3:c.946A>C	p.Ile316Leu	p.I316L	ENST00000273854	NM_004439.5	316	Atc/Ctc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485854	8485855	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	28	354	0	ENST00000356435.5:c.2962_2963insG	p.Thr988SerfsTer19	p.T988Sfs*19	ENST00000356435		988	acc/aGcc																																																																														
AMER1	0	MSKCC	GRCh37	X	63411648	63411648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	37	757	0	ENST00000330258.3:c.1519G>C	p.Glu507Gln	p.E507Q	ENST00000330258	NM_152424.3	507	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	471	579	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15838385	15838385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	198	471	0	ENST00000307771.7:c.883C>T	p.Arg295Ter	p.R295*	ENST00000307771	NM_005089.3	295	Cga/Tga																																																																														
RET	0	MSKCC	GRCh37	10	43622048	43622048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	104	324	0	ENST00000355710.3:c.3065C>A	p.Thr1022Asn	p.T1022N	ENST00000355710	NM_020975.4	1022	aCt/aAt																																																																														
ABL1	0	MSKCC	GRCh37	9	133760715	133760715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	40	848	0	ENST00000318560.5:c.3038G>A	p.Arg1013Gln	p.R1013Q	ENST00000318560	NM_005157.4	1013	cGg/cAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76909691	76909691	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0025932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	147	329	1	ENST00000373344.5:c.4215-1G>C		p.X1405_splice	ENST00000373344	NM_000489.3	1405																																																																															
KIT	0	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	935	475	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa																																																																														
KIT	0	MSKCC	GRCh37	4	55564479	55564479	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025934-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	337	487	0	ENST00000288135.5:c.367T>A	p.Ser123Thr	p.S123T	ENST00000288135	NM_000222.2	123	Tcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	436	639	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	60	863	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	287	341	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433722	49433722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	632	1111	4	ENST00000301067.7:c.7831C>T	p.Arg2611Cys	p.R2611C	ENST00000301067	NM_003482.3	2611	Cgc/Tgc																																																																														
BCL10	0	MSKCC	GRCh37	1	85736555	85736555	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	98	278	0	ENST00000370580.1:c.92A>G	p.Lys31Arg	p.K31R	ENST00000370580	NM_003921.4	31	aAa/aGa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114711026	114711026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	44	347	1	ENST00000543371.1:c.250G>A	p.Glu84Lys	p.E84K	ENST00000543371	NM_001198531.1	84	Gaa/Aaa																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871108	12871109	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	67	294	0	ENST00000228872.4:c.337dup	p.Arg113ProfsTer12	p.R113Pfs*12	ENST00000228872	NM_004064.3	112	agc/agCc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81888106	81888106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	172	619	0	ENST00000359376.3:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000359376	NM_002661.3	84	cGa/cAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9523329	9523329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	317	492	0	ENST00000353224.5:c.1908G>T	p.Met636Ile	p.M636I	ENST00000353224	NM_177990.2	636	atG/atT																																																																														
NF2	0	MSKCC	GRCh37	22	30032752	30032752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	144	392	0	ENST00000338641.4:c.127G>T	p.Gly43Trp	p.G43W	ENST00000338641	NM_000268.3	43	Ggg/Tgg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965602	93965602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	297	642	0	ENST00000369303.4:c.2326G>T	p.Asp776Tyr	p.D776Y	ENST00000369303	NM_004440.3	776	Gat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	185	531	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KDM5A	0	MSKCC	GRCh37	12	472220	472220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	126	444	1	ENST00000399788.2:c.581C>A	p.Pro194His	p.P194H	ENST00000399788	NM_001042603.1	194	cCt/cAt																																																																														
GLI1	0	MSKCC	GRCh37	12	57865474	57865474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	183	803	0	ENST00000228682.2:c.2951G>A	p.Arg984Lys	p.R984K	ENST00000228682	NM_005269.2	984	aGg/aAg																																																																														
FLT3	0	MSKCC	GRCh37	13	28601265	28601265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	151	524	0	ENST00000241453.7:c.2167T>G	p.Phe723Val	p.F723V	ENST00000241453	NM_004119.2	723	Ttc/Gtc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514574	103514574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	79	309	0	ENST00000355739.4:c.1075G>C	p.Glu359Gln	p.E359Q	ENST00000355739	NM_000123.3	359	Gag/Cag																																																																														
DICER1	0	MSKCC	GRCh37	14	95573946	95573946	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	97	299	0	ENST00000343455.3:c.2803A>T	p.Arg935Ter	p.R935*	ENST00000343455	NM_177438.2	935	Aga/Tga																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675100	40675100	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	191	896	0	ENST00000249776.8:c.64T>G	p.Cys22Gly	p.C22G	ENST00000249776	NM_033286.3	22	Tgc/Ggc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72863696	72863696	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	194	694	0	ENST00000268489.5:c.3511A>G	p.Lys1171Glu	p.K1171E	ENST00000268489	NM_006885.3	1171	Aag/Gag																																																																														
ESR1	0	MSKCC	GRCh37	6	152332923	152332923	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	106	323	0	ENST00000206249.3:c.1229T>A	p.Leu410Ter	p.L410*	ENST00000206249	NM_000125.3	410	tTg/tAg																																																																														
MED12	0	MSKCC	GRCh37	X	70352797	70352797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	205	774	0	ENST00000374080.3:c.4518G>T	p.Gln1506His	p.Q1506H	ENST00000374080		1506	caG/caT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	32	579	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	59	671	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463583	25463583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	84	674	0	ENST00000264709.3:c.2099C>T	p.Pro700Leu	p.P700L	ENST00000264709	NM_175629.2	700	cCa/cTa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603029	48603059	+	frameshift_variant	Frame_Shift_Del	DEL	CATCGACAGATGCAGCAGCAGGCGGCTACTG	CATCGACAGATGCAGCAGCAGGCGGCTACTG	-			P-0025808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	35	377	0	ENST00000342988.3:c.1332_1362del	p.Arg445LysfsTer21	p.R445Kfs*21	ENST00000342988	NM_005359.5	444	CATCGACAGATGCAGCAGCAGGCGGCTACTGca/ca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151900050	151900050	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	37	633	0	ENST00000262189.6:c.4061del	p.Lys1354SerfsTer20	p.K1354Sfs*20	ENST00000262189	NM_170606.2	1354	aAg/ag																																																																														
AR	0	MSKCC	GRCh37	X	66765487	66765487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	44	761	0	ENST00000374690.3:c.499C>A	p.Leu167Met	p.L167M	ENST00000374690	NM_000044.3	167	Ctg/Atg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	87	312	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	113	601	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	107	340	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0025812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	332	489	1	ENST00000275493.2:c.2314_2319dupCCCCAC	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	298	460	1	ENST00000371953.3:c.389G>C	p.Arg130Pro	p.R130P	ENST00000371953	NM_000314.4	130	cGa/cCa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0025812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	73	281	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
PTEN	0	MSKCC	GRCh37	10	89711906	89711906	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	165	475	0	ENST00000371953.3:c.524T>A	p.Val175Glu	p.V175E	ENST00000371953	NM_000314.4	175	gTg/gAg																																																																														
STAT3	0	MSKCC	GRCh37	17	40485984	40485984	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	156	581	0	ENST00000264657.5:c.881A>T	p.Lys294Ile	p.K294I	ENST00000264657	NM_139276.2	294	aAa/aTa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0004403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			340	358	783	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0004403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			61	120	480	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0004403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			132	397	860	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
PTEN	0	MSKCC	GRCh37	10	89685309	89685309	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			51	136	477	0	ENST00000371953.3:c.204C>G	p.Tyr68Ter	p.Y68*	ENST00000371953	NM_000314.4	68	taC/taG																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575096	48575096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			56	201	519	0	ENST00000342988.3:c.290G>A	p.Arg97His	p.R97H	ENST00000342988	NM_005359.5	97	cGt/cAt																																																																														
AMER1	0	MSKCC	GRCh37	X	63411164	63411164	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	294	683	0	ENST00000330258.3:c.2003del	p.Ala668GlufsTer51	p.A668Efs*51	ENST00000330258	NM_152424.3	668	gCa/ga																																																																														
MTOR	0	MSKCC	GRCh37	1	11300566	11300566	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	356	853	0	ENST00000361445.4:c.1580A>C	p.Gln527Pro	p.Q527P	ENST00000361445	NM_004958.3	527	cAg/cCg																																																																														
POLE	0	MSKCC	GRCh37	12	133219287	133219287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	161	711	0	ENST00000320574.5:c.4757C>A	p.Ala1586Asp	p.A1586D	ENST00000320574	NM_006231.2	1586	gCt/gAt																																																																														
FANCA	0	MSKCC	GRCh37	16	89869681	89869681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	61	855	0	ENST00000389301.3:c.778G>C	p.Glu260Gln	p.E260Q	ENST00000389301	NM_000135.2	260	Gaa/Caa																																																																														
NF1	0	MSKCC	GRCh37	17	29556353	29556353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	147	661	0	ENST00000358273.4:c.2720A>G	p.Glu907Gly	p.E907G	ENST00000358273	NM_001042492.2	907	gAg/gGg																																																																														
PIK3CG	5294	MSKCC	GRCh37	7	106509562	106509562	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004403-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	46	718	0	ENST00000359195.3:c.1556T>C	p.Leu519Pro	p.L519P	ENST00000359195	NM_002649.2	519	cTt/cCt																																																																														
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	347	552	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061213	38061213	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	264	478	0	ENST00000250448.2:c.776A>C	p.Tyr259Ser	p.Y259S	ENST00000250448	NM_004496.3	259	tAc/tCc																																																																														
IRS2	0	MSKCC	GRCh37	13	110434946	110434947	+	missense_variant	Missense_Mutation	DNP	AA	AA	GT			P-0007874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	234	840	2	ENST00000375856.3:c.3454_3455delinsAC	p.Phe1152Thr	p.F1152T	ENST00000375856	NM_003749.2	1152	TTc/ACc																																																																														
RAD21	0	MSKCC	GRCh37	8	117874161	117874169	+	inframe_deletion	In_Frame_Del	DEL	TCAGGCAGG	TCAGGCAGG	-			P-0007874-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			664	201	355	0	ENST00000297338.2:c.285_293del	p.Asp95_Pro97del	p.D95_P97del	ENST00000297338	NM_006265.2	95	gaCCTGCCTGAg/gag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0014434-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	137	466	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TRAF2	0	MSKCC	GRCh37	9	139793208	139793208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014434-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			289	150	580	1	ENST00000247668.2:c.16G>A	p.Val6Met	p.V6M	ENST00000247668	NM_021138.3	6	Gtg/Atg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916937	178916948	+	inframe_deletion	In_Frame_Del	DEL	TGAAGAAAAGAT	TGAAGAAAAGAT	-			P-0014434-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	44	490	0	ENST00000263967.3:c.324_335del	p.Glu109_Ile112del	p.E109_I112del	ENST00000263967	NM_006218.2	108	cgTGAAGAAAAGATc/cgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	221	520	0	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041974	14041974	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022310-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	190	386	0	ENST00000311895.7:c.2521T>G	p.Ser841Ala	p.S841A	ENST00000311895	NM_005236.2	841	Tca/Gca																																																																														
TP53	0	MSKCC	GRCh37	17	7574005	7574005	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	422	578	0	ENST00000269305.4:c.1022del	p.Phe341SerfsTer4	p.F341Sfs*4	ENST00000269305	NM_001126112.2	341	tTc/tc																																																																														
AURKB	0	MSKCC	GRCh37	17	8108239	8108239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	118	659	2	ENST00000585124.1:c.985G>A	p.Ala329Thr	p.A329T	ENST00000585124	NM_004217.3	329	Gcc/Acc																																																																														
NF1	0	MSKCC	GRCh37	17	29528428	29528428	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	83	342	0	ENST00000358273.4:c.1186-1G>A		p.X396_splice	ENST00000358273	NM_001042492.2	396																																																																															
UPF1	0	MSKCC	GRCh37	19	18976166	18976166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	145	648	2	ENST00000262803.5:c.2926G>A	p.Val976Met	p.V976M	ENST00000262803	NM_002911.3	976	Gtg/Atg																																																																														
ATRX	0	MSKCC	GRCh37	X	76763976	76763976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	265	605	0	ENST00000373344.5:c.7332G>T	p.Leu2444Phe	p.L2444F	ENST00000373344	NM_000489.3	2444	ttG/ttT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056320	27056320	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	64	373	0	ENST00000324856.7:c.1316del	p.Gln439ArgfsTer180	p.Q439Rfs*180	ENST00000324856	NM_006015.4	439	cAg/cg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	55	365	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
PTEN	0	MSKCC	GRCh37	10	89685289	89685289	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	25	293	0	ENST00000371953.3:c.188delA	p.Asn63ThrfsTer36	p.N63Tfs*36	ENST00000371953	NM_000314.4	62	Aaa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	34	487	2	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	33	288	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67198870	67198871	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	31	377	0	ENST00000312629.5:c.348_349del	p.Arg117GlyfsTer2	p.R117Gfs*2	ENST00000312629	NM_003952.2	114	gCA/g																																																																														
BIRC3	0	MSKCC	GRCh37	11	102206729	102206729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	50	395	0	ENST00000263464.3:c.1357G>A	p.Ala453Thr	p.A453T	ENST00000263464	NM_001165.4	453	Gca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	98	553	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427743	49427743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	54	466	0	ENST00000301067.7:c.10745G>A	p.Arg3582Gln	p.R3582Q	ENST00000301067	NM_003482.3	3582	cGg/cAg																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	36	558	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
POLE	0	MSKCC	GRCh37	12	133256123	133256123	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	56	485	1	ENST00000320574.5:c.538C>T	p.Gln180Ter	p.Q180*	ENST00000320574	NM_006231.2	180	Cag/Tag																																																																														
NUP93	0	MSKCC	GRCh37	16	56865818	56865818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	39	297	0	ENST00000308159.5:c.1150G>T	p.Asp384Tyr	p.D384Y	ENST00000308159	NM_014669.4	384	Gat/Tat																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532475	63532475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	117	479	0	ENST00000307078.5:c.2104C>T	p.Arg702Cys	p.R702C	ENST00000307078	NM_004655.3	702	Cgc/Tgc																																																																														
INSR	0	MSKCC	GRCh37	19	7122771	7122771	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202160383		P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	35	388	0	ENST00000302850.5:c.3383G>A	p.Arg1128His	p.R1128H	ENST00000302850	NM_000208.2	1128	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	60	520	3	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211899	36211899	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	36	546	2	ENST00000222270.7:c.1656del	p.Lys553AsnfsTer52	p.K553Nfs*52	ENST00000222270	NM_014727.1	550	gaC/ga																																																																														
AXL	0	MSKCC	GRCh37	19	41749573	41749573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144824336		P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	51	431	0	ENST00000301178.4:c.1498G>A	p.Val500Met	p.V500M	ENST00000301178	NM_021913.4	500	Gtg/Atg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99172022	99172023	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	84	424	0	ENST00000074304.5:c.1591_1592del	p.Trp531AlafsTer29	p.W531Afs*29	ENST00000074304	NM_001134224.1	530	GTg/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	63	606	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
KIT	0	MSKCC	GRCh37	4	55602719	55602719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	28	425	1	ENST00000288135.5:c.2540C>T	p.Thr847Met	p.T847M	ENST00000288135	NM_000222.2	847	aCg/aTg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31508787	31508787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	79	499	0	ENST00000344624.3:c.1528C>T	p.Arg510Cys	p.R510C	ENST00000344624		510	Cgc/Tgc																																																																														
IL7R	0	MSKCC	GRCh37	5	35875632	35875632	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	42	409	0	ENST00000303115.3:c.819G>A	p.Trp273Ter	p.W273*	ENST00000303115	NM_002185.3	273	tgG/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	22	288	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523068	176523068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	22	415	0	ENST00000292408.4:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000292408	NM_213647.1	611	cGg/cAg																																																																														
CCND3	0	MSKCC	GRCh37	6	41903705	41903706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAGTGCTGGTCTGGCTGGGCCC			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	44	485	0	ENST00000372991.4:c.829_851dup	p.Thr285GlyfsTer27	p.T285Gfs*27	ENST00000372991	NM_001760.3	284	cct/ccGGGCCCAGCCAGACCAGCACTCCt																																																																														
AR	0	MSKCC	GRCh37	X	66905873	66905873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	45	379	0	ENST00000374690.3:c.1790C>T	p.Ala597Val	p.A597V	ENST00000374690	NM_000044.3	597	gCc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	114	499	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
POLE	0	MSKCC	GRCh37	12	133238247	133238247	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	109	458	1	ENST00000320574.5:c.2730C>G	p.Tyr910Ter	p.Y910*	ENST00000320574	NM_006231.2	910	taC/taG																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56179387	56179387	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0025729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	88	319	0	ENST00000399503.3:c.3700A>T	p.Lys1234Ter	p.K1234*	ENST00000399503	NM_005921.1	1234	Aaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	218	1016	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																														
BCOR	0	MSKCC	GRCh37	X	39934178	39934179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	104	389	0	ENST00000378444.4:c.420dup	p.Pro141ThrfsTer45	p.P141Tfs*45	ENST00000378444	NM_001123385.1	140	-/A																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	64	122	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0025733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	313	603	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	190	310	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	185	401	1	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857944	9857944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	272	513	0	ENST00000330684.3:c.3457G>A	p.Asp1153Asn	p.D1153N	ENST00000330684	NM_001134407.1	1153	Gat/Aat																																																																														
FGFR4	0	MSKCC	GRCh37	5	176517948	176517948	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	171	493	0	ENST00000292408.4:c.446G>A	p.Trp149Ter	p.W149*	ENST00000292408	NM_213647.1	149	tGg/tAg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18466994	18466994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	218	368	0	ENST00000266497.5:c.1133G>A	p.Arg378Gln	p.R378Q	ENST00000266497		378	cGa/cAa																																																																														
TET2	0	MSKCC	GRCh37	4	106157053	106157053	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	247	454	0	ENST00000380013.4:c.1954C>T	p.Gln652Ter	p.Q652*	ENST00000380013	NM_001127208.2	652	Cag/Tag																																																																														
UPF1	0	MSKCC	GRCh37	19	18966792	18966792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	210	579	0	ENST00000262803.5:c.1603C>T	p.His535Tyr	p.H535Y	ENST00000262803	NM_002911.3	535	Cac/Tac																																																																														
HLA-A	0	MSKCC	GRCh37	6	29912292	29912292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	273	1111	0	ENST00000376809.5:c.911C>T	p.Pro304Leu	p.P304L	ENST00000376809	NM_002116.7	304	cCc/cTc																																																																														
ROS1	0	MSKCC	GRCh37	6	117647535	117647535	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	202	537	0	ENST00000368508.3:c.5409G>A	p.Trp1803Ter	p.W1803*	ENST00000368508	NM_002944.2	1803	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	159	687	1	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
EGFR	0	MSKCC	GRCh37	7	55249010	55249011	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GTT			P-0025741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	492	560	0	ENST00000275493.2:c.2308_2309insGTT	p.Asp770delinsGlyTyr	p.D770delinsGY	ENST00000275493	NM_005228.3	770	gac/gGTTac																																																																														
CDH1	0	MSKCC	GRCh37	16	68842606	68842606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	127	651	2	ENST00000261769.5:c.542A>G	p.Asn181Ser	p.N181S	ENST00000261769	NM_004360.3	181	aAc/aGc																																																																														
PMS1	0	MSKCC	GRCh37	2	190719415	190719415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	42	420	0	ENST00000441310.2:c.1417G>T	p.Asp473Tyr	p.D473Y	ENST00000441310	NM_000534.4	473	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	36	536	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	101	570	2	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198281635	198281635	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0025770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	113	330	1	ENST00000335508.6:c.496C>T	p.Arg166Ter	p.R166*	ENST00000335508	NM_012433.2	166	Cga/Tga																																																																														
INHBA	0	MSKCC	GRCh37	7	41730068	41730068	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	278	424	1	ENST00000242208.4:c.461A>T	p.Glu154Val	p.E154V	ENST00000242208	NM_002192.2	154	gAa/gTa																																																																														
PREX2	0	MSKCC	GRCh37	8	68984736	68984736	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	36	345	0	ENST00000288368.4:c.1500A>T	p.Lys500Asn	p.K500N	ENST00000288368	NM_024870.2	500	aaA/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	20	476	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	114	285	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	104	485	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	80	187	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	172	472	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	107	372	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89720709	89720709	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	66	104	0	ENST00000371953.3:c.860C>G	p.Ser287Ter	p.S287*	ENST00000371953	NM_000314.4	287	tCa/tGa																																																																														
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	84	314	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga																																																																														
JAK3	0	MSKCC	GRCh37	19	17951086	17951086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	226	588	0	ENST00000458235.1:c.1207C>T	p.Arg403Cys	p.R403C	ENST00000458235	NM_000215.3	403	Cgc/Tgc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81979857	81979857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	42	376	0	ENST00000359376.3:c.3559C>T	p.Arg1187Trp	p.R1187W	ENST00000359376	NM_002661.3	1187	Cgg/Tgg																																																																														
IRS1	0	MSKCC	GRCh37	2	227663358	227663358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	106	336	0	ENST00000305123.5:c.97C>T	p.Arg33Cys	p.R33C	ENST00000305123	NM_005544.2	33	Cgc/Tgc																																																																														
CDH1	0	MSKCC	GRCh37	16	68844172	68844172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	160	520	0	ENST00000261769.5:c.760G>T	p.Asp254Tyr	p.D254Y	ENST00000261769	NM_004360.3	254	Gat/Tat																																																																														
GATA3	0	MSKCC	GRCh37	10	8111434	8111434	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0025775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	128	322	0	ENST00000346208.3:c.922-2A>G		p.X308_splice	ENST00000346208		308																																																																															
NF1	0	MSKCC	GRCh37	17	29657480	29657480	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	107	403	0	ENST00000358273.4:c.5780del	p.Leu1927TrpfsTer15	p.L1927Wfs*15	ENST00000358273	NM_001042492.2	1926	Ttt/tt																																																																														
ARAF	0	MSKCC	GRCh37	X	47426444	47426444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025775-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	185	449	0	ENST00000377045.4:c.787G>A	p.Val263Met	p.V263M	ENST00000377045	NM_001654.4	263	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	199	531	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602714	10602714	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	336	544	0	ENST00000171111.5:c.864C>A	p.Cys288Ter	p.C288*	ENST00000171111	NM_203500.1	288	tgC/tgA																																																																														
STK11	0	MSKCC	GRCh37	19	1220644	1220645	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0025777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	266	456	0	ENST00000326873.7:c.662_663delinsT	p.Pro221LeufsTer66	p.P221Lfs*66	ENST00000326873	NM_000455.4	221	cCG/cT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	393	452	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0025779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	70	343	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577505	7577506	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTC			P-0025779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	189	435	0	ENST00000269305.4:c.772_775dup	p.Asp259GlyfsTer6	p.D259Gfs*6	ENST00000269305	NM_001126112.2	259	gac/gGAAGac																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	297	482	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	270	523	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
IRS1	0	MSKCC	GRCh37	2	227662872	227662872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	210	515	2	ENST00000305123.5:c.583G>A	p.Val195Met	p.V195M	ENST00000305123	NM_005544.2	195	Gtg/Atg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185155280	185155300	+	inframe_deletion	In_Frame_Del	DEL	TGGGTAGTGGAGCCCAAGGAG	TGGGTAGTGGAGCCCAAGGAG	-			P-0025781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	215	484	0	ENST00000265026.3:c.521_541del	p.Leu174_Ala181delinsPro	p.L174_A181delinsP	ENST00000265026	NM_004721.4	174	cTGGGTAGTGGAGCCCAAGGAGcg/ccg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878643	151878643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	199	425	0	ENST00000262189.6:c.6302del	p.Pro2101HisfsTer5	p.P2101Hfs*5	ENST00000262189	NM_170606.2	2101	cCa/ca																																																																														
PREX2	0	MSKCC	GRCh37	8	69000026	69000026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	260	547	0	ENST00000288368.4:c.2095G>T	p.Val699Leu	p.V699L	ENST00000288368	NM_024870.2	699	Gtg/Ttg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	212	261	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	212	261	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	212	261	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
BCOR	0	MSKCC	GRCh37	X	39931765	39931765	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	171	555	0	ENST00000378444.4:c.2834A>G	p.Asp945Gly	p.D945G	ENST00000378444	NM_001123385.1	945	gAt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	145	515	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	187	404	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	198	306	0	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc																																																																														
CYLD	0	MSKCC	GRCh37	16	50813599	50813599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	113	417	0	ENST00000398568.2:c.1153C>G	p.Leu385Val	p.L385V	ENST00000398568	NM_001042412.1	385	Ctt/Gtt																																																																														
CIC	0	MSKCC	GRCh37	19	42794787	42794787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	106	454	0	ENST00000575354.2:c.1867G>A	p.Gly623Arg	p.G623R	ENST00000575354	NM_015125.3	623	Gga/Aga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936073	178936074	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTCTCT			P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	111	352	0	ENST00000263967.3:c.1618_1623dup	p.Leu540_Ser541dup	p.L540_S541dup	ENST00000263967	NM_006218.2	540	cct/cCTCTCTct																																																																														
MED12	0	MSKCC	GRCh37	X	70347223	70347223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	259	263	0	ENST00000374080.3:c.2887G>A	p.Asp963Asn	p.D963N	ENST00000374080		963	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	130	587	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	323	726	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	196	290	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																														
ELF3	0	MSKCC	GRCh37	1	201981551	201981552	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	273	863	0	ENST00000359651.3:c.465_466insTA	p.Pro156TyrfsTer99	p.P156Yfs*99	ENST00000359651		155	-/TA																																																																														
PGR	0	MSKCC	GRCh37	11	100998706	100998706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	182	841	1	ENST00000325455.5:c.1096G>T	p.Asp366Tyr	p.D366Y	ENST00000325455	NM_001202474.3	366	Gac/Tac																																																																														
PTPRS	0	MSKCC	GRCh37	19	5240268	5240268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	299	855	0	ENST00000357368.4:c.1646G>A	p.Arg549Gln	p.R549Q	ENST00000357368	NM_002850.3	549	cGg/cAg																																																																														
FLT4	0	MSKCC	GRCh37	5	180055990	180055990	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	235	763	0	ENST00000261937.6:c.995T>C	p.Phe332Ser	p.F332S	ENST00000261937	NM_182925.4	332	tTc/tCc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509025	106509025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	203	527	0	ENST00000359195.3:c.1019C>T	p.Thr340Ile	p.T340I	ENST00000359195	NM_002649.2	340	aCc/aTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057947	27057947	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	64	376	0	ENST00000324856.7:c.1655C>G	p.Ser552Ter	p.S552*	ENST00000324856	NM_006015.4	552	tCa/tGa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12011144	12011144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	237	324	0	ENST00000353533.5:c.551C>T	p.Ser184Leu	p.S184L	ENST00000353533	NM_003010.3	184	tCg/tTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	57	509	2	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																														
PMS1	0	MSKCC	GRCh37	2	190719140	190719140	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	36	250	0	ENST00000441310.2:c.1142C>G	p.Ser381Ter	p.S381*	ENST00000441310	NM_000534.4	381	tCa/tGa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980872	40980872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	37	322	0	ENST00000373198.4:c.1614G>C	p.Gln538His	p.Q538H	ENST00000373198	NM_133170.3	538	caG/caC																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111881363	111881363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	49	360	1	ENST00000393256.3:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000393256	NM_006538.4	14	cGa/cAa																																																																														
CHEK2	0	MSKCC	GRCh37	22	29120995	29120995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	51	476	0	ENST00000328354.6:c.562G>A	p.Glu188Lys	p.E188K	ENST00000328354	NM_007194.3	188	Gaa/Aaa																																																																														
DAXX	0	MSKCC	GRCh37	6	33287404	33287404	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	44	362	0	ENST00000374542.5:c.1693C>T	p.Gln565Ter	p.Q565*	ENST00000374542	NM_001141970.1	565	Cag/Tag																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024332	31024332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	66	374	1	ENST00000375687.4:c.3817C>T	p.Arg1273Cys	p.R1273C	ENST00000375687	NM_015338.5	1273	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	184	356	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
BRCA1	0	MSKCC	GRCh37	17	41243911	41243911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	37	400	0	ENST00000357654.3:c.3637G>A	p.Glu1213Lys	p.E1213K	ENST00000357654	NM_007294.3	1213	Gaa/Aaa																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665346	138665346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	47	524	0	ENST00000330315.3:c.219G>C	p.Lys73Asn	p.K73N	ENST00000330315	NM_023067.3	73	aaG/aaC																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780869	9780869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	43	453	0	ENST00000377346.4:c.1591G>A	p.Val531Met	p.V531M	ENST00000377346	NM_005026.3	531	Gtg/Atg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9782306	9782306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	32	361	0	ENST00000377346.4:c.2239G>C	p.Glu747Gln	p.E747Q	ENST00000377346	NM_005026.3	747	Gag/Cag																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9784475	9784475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	22	320	0	ENST00000377346.4:c.2860G>C	p.Glu954Gln	p.E954Q	ENST00000377346	NM_005026.3	954	Gaa/Caa																																																																														
MTOR	0	MSKCC	GRCh37	1	11300369	11300369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	47	346	0	ENST00000361445.4:c.1777G>C	p.Glu593Gln	p.E593Q	ENST00000361445	NM_004958.3	593	Gaa/Caa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123325136	123325136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	45	441	0	ENST00000358487.5:c.192G>C	p.Leu64Phe	p.L64F	ENST00000358487	NM_000141.4	64	ttG/ttC																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195253	102195253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	41	232	0	ENST00000263464.3:c.13G>C	p.Glu5Gln	p.E5Q	ENST00000263464	NM_001165.4	5	Gaa/Caa																																																																														
GLI1	0	MSKCC	GRCh37	12	57858524	57858524	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	66	467	0	ENST00000228682.2:c.262C>G	p.Leu88Val	p.L88V	ENST00000228682	NM_005269.2	88	Ctg/Gtg																																																																														
GLI1	0	MSKCC	GRCh37	12	57858629	57858629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	46	302	0	ENST00000228682.2:c.367C>T	p.His123Tyr	p.H123Y	ENST00000228682	NM_005269.2	123	Cat/Tat																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060728	38060728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	42	602	0	ENST00000250448.2:c.1261G>C	p.Glu421Gln	p.E421Q	ENST00000250448	NM_004496.3	421	Gaa/Caa																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43749170	43749170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	82	523	1	ENST00000382044.4:c.1636G>A	p.Glu546Lys	p.E546K	ENST00000382044	NM_001141980.1	546	Gaa/Aaa																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729222	66729222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	116	369	0	ENST00000307102.5:c.430G>C	p.Glu144Gln	p.E144Q	ENST00000307102	NM_002755.3	144	Gag/Cag																																																																														
TSC2	0	MSKCC	GRCh37	16	2136368	2136368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	153	360	2	ENST00000219476.3:c.4837G>A	p.Asp1613Asn	p.D1613N	ENST00000219476	NM_000548.3	1613	Gac/Aac																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029392	14029392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	52	245	0	ENST00000311895.7:c.1603G>A	p.Asp535Asn	p.D535N	ENST00000311895	NM_005236.2	535	Gat/Aat																																																																														
CDH1	0	MSKCC	GRCh37	16	68862207	68862207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	216	411	0	ENST00000261769.5:c.2295G>C	p.Gln765His	p.Q765H	ENST00000261769	NM_004360.3	765	caG/caC																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349612	89349612	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	389	611	1	ENST00000301030.4:c.3338G>A	p.Trp1113Ter	p.W1113*	ENST00000301030	NM_001256183.1	1113	tGg/tAg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41223183	41223183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	61	393	0	ENST00000357654.3:c.4748G>C	p.Arg1583Thr	p.R1583T	ENST00000357654	NM_007294.3	1583	aGa/aCa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244274	41244274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	71	577	0	ENST00000357654.3:c.3274G>A	p.Glu1092Lys	p.E1092K	ENST00000357654	NM_007294.3	1092	Gag/Aag																																																																														
BRCA1	0	MSKCC	GRCh37	17	41276089	41276089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	74	408	0	ENST00000357654.3:c.25G>A	p.Glu9Lys	p.E9K	ENST00000357654	NM_007294.3	9	Gaa/Aaa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63545744	63545744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	39	392	1	ENST00000307078.5:c.850C>T	p.His284Tyr	p.H284Y	ENST00000307078	NM_004655.3	284	Cac/Tac																																																																														
DOT1L	0	MSKCC	GRCh37	19	2223466	2223466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	35	274	1	ENST00000398665.3:c.3577G>A	p.Asp1193Asn	p.D1193N	ENST00000398665	NM_032482.2	1193	Gac/Aac																																																																														
PTPRS	0	MSKCC	GRCh37	19	5231618	5231618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	11	76	0	ENST00000357368.4:c.1858G>A	p.Ala620Thr	p.A620T	ENST00000357368	NM_002850.3	620	Gcc/Acc																																																																														
CALR	0	MSKCC	GRCh37	19	13054400	13054400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	68	507	1	ENST00000316448.5:c.1010C>T	p.Ala337Val	p.A337V	ENST00000316448	NM_004343.3	337	gCa/gTa																																																																														
BRD4	0	MSKCC	GRCh37	19	15353760	15353760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	55	504	0	ENST00000263377.2:c.3120C>G	p.Ile1040Met	p.I1040M	ENST00000263377	NM_058243.2	1040	atC/atG																																																																														
KMT2B	0	MSKCC	GRCh37	19	36220908	36220908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	98	199	0	ENST00000222270.7:c.4958G>A	p.Cys1653Tyr	p.C1653Y	ENST00000222270	NM_014727.1	1653	tGc/tAc																																																																														
RRAS	0	MSKCC	GRCh37	19	50139048	50139048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	76	513	1	ENST00000246792.3:c.515C>T	p.Ser172Leu	p.S172L	ENST00000246792	NM_006270.3	172	tCg/tTg																																																																														
MSH2	0	MSKCC	GRCh37	2	47703608	47703608	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	46	396	0	ENST00000233146.2:c.2108C>G	p.Ser703Cys	p.S703C	ENST00000233146	NM_000251.2	703	tCc/tGc																																																																														
IRS1	0	MSKCC	GRCh37	2	227661158	227661158	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	35	477	0	ENST00000305123.5:c.2297C>G	p.Ser766Ter	p.S766*	ENST00000305123	NM_005544.2	766	tCa/tGa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62290843	62290843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	131	273	0	ENST00000508582.2:c.88G>A	p.Glu30Lys	p.E30K	ENST00000508582		30	Gaa/Aaa																																																																														
U2AF1	0	MSKCC	GRCh37	21	44515634	44515634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	54	472	0	ENST00000291552.4:c.262G>C	p.Glu88Gln	p.E88Q	ENST00000291552	NM_006758.2	88	Gaa/Caa																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182683383	182683383	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	55	396	0	ENST00000292782.4:c.162G>C	p.Glu54Asp	p.E54D	ENST00000292782	NM_020640.2	54	gaG/gaC																																																																														
RAD50	0	MSKCC	GRCh37	5	131893142	131893142	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	39	216	0	ENST00000265335.6:c.126G>C	p.Lys42Asn	p.K42N	ENST00000265335		42	aaG/aaC																																																																														
NSD1	0	MSKCC	GRCh37	5	176696616	176696616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	46	158	0	ENST00000439151.2:c.5317G>A	p.Glu1773Lys	p.E1773K	ENST00000439151	NM_022455.4	1773	Gag/Aag																																																																														
NSD1	0	MSKCC	GRCh37	5	176696731	176696731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	108	359	0	ENST00000439151.2:c.5432G>A	p.Arg1811Gln	p.R1811Q	ENST00000439151	NM_022455.4	1811	cGa/cAa																																																																														
HGF	0	MSKCC	GRCh37	7	81350074	81350074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	46	303	0	ENST00000222390.5:c.1258G>A	p.Glu420Lys	p.E420K	ENST00000222390	NM_000601.4	420	Gaa/Aaa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509042	106509042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	41	338	0	ENST00000359195.3:c.1036C>A	p.His346Asn	p.H346N	ENST00000359195	NM_002649.2	346	Cac/Aac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528593	8528593	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	49	255	0	ENST00000356435.5:c.539C>T	p.Ser180Leu	p.S180L	ENST00000356435		180	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	391	534	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0025806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	141	383	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7576899	7576900	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0025806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	388	611	0	ENST00000269305.4:c.945_946dup	p.Pro316LeufsTer30	p.P316Lfs*30	ENST00000269305	NM_001126112.2	316	ccc/cTCcc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121416615	121416615	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	203	551	0	ENST00000257555.6:c.46del	p.Leu16CysfsTer6	p.L16Cfs*6	ENST00000257555		15	gCc/gc																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123480496	123480496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	136	409	0	ENST00000371139.4:c.4G>C	p.Asp2His	p.D2H	ENST00000371139	NM_001114937.2	2	Gac/Cac																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432533	49432533	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	135	558	0	ENST00000301067.7:c.8606C>G	p.Pro2869Arg	p.P2869R	ENST00000301067	NM_003482.3	2869	cCt/cGt																																																																														
BAP1	0	MSKCC	GRCh37	3	52437896	52437896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	144	626	0	ENST00000460680.1:c.1265del	p.Gly422GlufsTer8	p.G422Efs*8	ENST00000460680	NM_004656.3	422	gGa/ga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153253800	153253800	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	138	411	0	ENST00000281708.4:c.933G>A	p.Trp311Ter	p.W311*	ENST00000281708	NM_033632.3	311	tgG/tgA																																																																														
ATRX	0	MSKCC	GRCh37	X	76776348	76776348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	163	564	0	ENST00000373344.5:c.7118C>T	p.Ala2373Val	p.A2373V	ENST00000373344	NM_000489.3	2373	gCa/gTa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	97	452	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	97	452	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	97	452	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																														
ATRX	0	MSKCC	GRCh37	X	76889163	76889163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	153	477	0	ENST00000373344.5:c.4847A>G	p.Lys1616Arg	p.K1616R	ENST00000373344	NM_000489.3	1616	aAa/aGa																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957537	175957540	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0025811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	36	408	0	ENST00000367669.3:c.1856_1859del	p.Asp619ValfsTer3	p.D619Vfs*3	ENST00000367669	NM_022457.5	619	gACAGt/gt																																																																														
YAP1	0	MSKCC	GRCh37	11	102056841	102056841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	175	501	0	ENST00000282441.5:c.781C>T	p.Pro261Ser	p.P261S	ENST00000282441	NM_001130145.2	261	Cca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7579430	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	495	647	1	ENST00000269305.4:c.257del	p.Ala86AspfsTer37	p.A86Dfs*37	ENST00000269305	NM_001126112.2	86	gCa/ga																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15289720	15289720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1386	185	708	0	ENST00000263388.2:c.3751G>A	p.Glu1251Lys	p.E1251K	ENST00000263388	NM_000435.2	1251	Gag/Aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89690802	89690802	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	193	298	0	ENST00000371953.3:c.210-1G>C		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
BRCA2	0	MSKCC	GRCh37	13	32911713	32911713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	315	531	0	ENST00000380152.3:c.3221G>A	p.Ser1074Asn	p.S1074N	ENST00000380152		1074	aGt/aAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1273	210	965	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
IL7R	0	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	77	637	0	ENST00000303115.3:c.1241C>A	p.Thr414Lys	p.T414K	ENST00000303115	NM_002185.3	414	aCg/aAg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32937465	32937465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	96	692	1	ENST00000380152.3:c.8126G>T	p.Ser2709Ile	p.S2709I	ENST00000380152		2709	aGt/aTt																																																																														
BARD1	0	MSKCC	GRCh37	2	215632303	215632303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	128	554	1	ENST00000260947.4:c.1471G>T	p.Gly491Trp	p.G491W	ENST00000260947	NM_000465.2	491	Ggg/Tgg																																																																														
NSD1	0	MSKCC	GRCh37	5	176707797	176707797	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	49	431	0	ENST00000439151.2:c.5854C>G	p.Arg1952Gly	p.R1952G	ENST00000439151	NM_022455.4	1952	Cgg/Ggg																																																																														
ROS1	0	MSKCC	GRCh37	6	117647387	117647387	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	152	754	0	ENST00000368508.3:c.5557G>T	p.Asp1853Tyr	p.D1853Y	ENST00000368508	NM_002944.2	1853	Gat/Tat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528723	8528723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	44	408	0	ENST00000356435.5:c.409G>T	p.Val137Phe	p.V137F	ENST00000356435		137	Gtt/Ttt																																																																														
ATRX	0	MSKCC	GRCh37	X	76938857	76938857	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	58	626	0	ENST00000373344.5:c.1891C>T	p.Gln631Ter	p.Q631*	ENST00000373344	NM_000489.3	631	Cag/Tag																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344075	118344076	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	145	362	0	ENST00000534358.1:c.2206dupA	p.Arg736LysfsTer7	p.R736Kfs*7	ENST00000534358	NM_005933.3	734	aga/agAa																																																																														
FLCN	0	MSKCC	GRCh37	17	17122373	17122373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	82	528	0	ENST00000285071.4:c.1022G>A	p.Arg341Gln	p.R341Q	ENST00000285071	NM_144997.5	341	cGg/cAg																																																																														
GATA3	0	MSKCC	GRCh37	10	8100271	8100272	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0025826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	97	562	0	ENST00000346208.3:c.245_246del	p.Ser82ThrfsTer220	p.S82Tfs*220	ENST00000346208		82	aGC/a																																																																														
CARD11	0	MSKCC	GRCh37	7	2983972	2983972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	73	693	1	ENST00000396946.4:c.558G>T	p.Glu186Asp	p.E186D	ENST00000396946	NM_032415.4	186	gaG/gaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	178	670	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	652	1012	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
STK11	0	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	323	1333	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652097	36652098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	221	1075	0	ENST00000244741.5:c.222dup	p.Lys75GlnfsTer14	p.K75Qfs*14	ENST00000244741	NM_000389.4	73	-/C																																																																														
CDH1	0	MSKCC	GRCh37	16	68857403	68857415	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTTAGAGGTCA	ACCTTAGAGGTCA	-			P-0025827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	242	772	0	ENST00000261769.5:c.2038_2050del	p.Thr680AlafsTer38	p.T680Afs*38	ENST00000261769	NM_004360.3	680	ACCTTAGAGGTCAgc/gc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59858308	59858308	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	161	627	1	ENST00000259008.2:c.1687G>C	p.Asp563His	p.D563H	ENST00000259008	NM_032043.2	563	Gat/Cat																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873020	134873020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	241	797	0	ENST00000398015.3:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000398015	NM_004441.4	442	Caa/Taa																																																																														
BCL6	0	MSKCC	GRCh37	3	187447681	187447681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	250	798	0	ENST00000232014.4:c.512G>A	p.Ser171Asn	p.S171N	ENST00000232014	NM_001130845.1	171	aGc/aAc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36653535	36653535	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	264	637	0	ENST00000244741.5:c.454del	p.His152ThrfsTer6	p.H152Tfs*6	ENST00000244741	NM_000389.4	151	taC/ta																																																																														
SOX17	0	MSKCC	GRCh37	8	55372385	55372385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1310	253	1421	1	ENST00000297316.4:c.1075G>A	p.Asp359Asn	p.D359N	ENST00000297316	NM_022454.3	359	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0025876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	215	422	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	189	396	0	ENST00000288602.6:c.1406G>A	p.Gly469Glu	p.G469E	ENST00000288602	NM_004333.4	469	gGa/gAa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	156	380	0	ENST00000342988.3:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000342988	NM_005359.5	537	Gac/Tac																																																																														
PGR	0	MSKCC	GRCh37	11	100912748	100912748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	151	493	0	ENST00000325455.5:c.2574G>C	p.Leu858Phe	p.L858F	ENST00000325455	NM_001202474.3	858	ttG/ttC																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467177	25467177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	188	364	0	ENST00000264709.3:c.1698G>T	p.Leu566Phe	p.L566F	ENST00000264709	NM_175629.2	566	ttG/ttT																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	184	811	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71037144	71037144	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0025877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	80	394	2	ENST00000318789.4:c.1146+1G>A		p.X382_splice	ENST00000318789	NM_032682.5	382																																																																															
EPHB1	0	MSKCC	GRCh37	3	134670324	134670324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	96	498	1	ENST00000398015.3:c.235C>T	p.Arg79Trp	p.R79W	ENST00000398015	NM_004441.4	79	Cgg/Tgg																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158614	26158614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	51	368	0	ENST00000289316.2:c.217C>T	p.Arg73Cys	p.R73C	ENST00000289316	NM_138720.2	73	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0025878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	251	524	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0025878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	709	657	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857436	9857437	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	123	436	0	ENST00000330684.3:c.3964_3965delinsAA	p.Gly1322Lys	p.G1322K	ENST00000330684	NM_001134407.1	1322	GGa/AAa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2191165	2191165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	241	871	0	ENST00000398665.3:c.419C>T	p.Ser140Phe	p.S140F	ENST00000398665	NM_032482.2	140	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	162	387	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68849517	68849517	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	232	567	0	ENST00000261769.5:c.1420del	p.Thr474ProfsTer7	p.T474Pfs*7	ENST00000261769	NM_004360.3	474	Acc/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	82	581	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0025880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	54	449	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
ATM	0	MSKCC	GRCh37	11	108121433	108121435	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0025880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	13	239	0	ENST00000278616.4:c.1241_1243del	p.Gln414_Ile415delinsLeu	p.Q414_I415delinsL	ENST00000278616	NM_000051.3	414	cAGAtt/ctt																																																																														
ASXL2	0	MSKCC	GRCh37	2	25982382	25982382	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	35	353	0	ENST00000435504.4:c.908T>A	p.Leu303Gln	p.L303Q	ENST00000435504		303	cTg/cAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	152012413	152012413	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	32	301	0	ENST00000262189.6:c.400T>A	p.Cys134Ser	p.C134S	ENST00000262189	NM_170606.2	134	Tgc/Agc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	85	381	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
SOX17	0	MSKCC	GRCh37	8	55372206	55372206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	70	392	0	ENST00000297316.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000297316	NM_022454.3	299	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	121	347	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
MDC1	0	MSKCC	GRCh37	6	30679733	30679733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	119	452	0	ENST00000376406.3:c.1986G>C	p.Gln662His	p.Q662H	ENST00000376406	NM_014641.2	662	caG/caC																																																																														
PTPN11	0	MSKCC	GRCh37	12	112888210	112888210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	63	513	0	ENST00000351677.2:c.226G>C	p.Glu76Gln	p.E76Q	ENST00000351677	NM_002834.3	76	Gag/Cag																																																																														
ATR	0	MSKCC	GRCh37	3	142261554	142261555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	116	539	0	ENST00000350721.4:c.3402dupT	p.Asn1135Ter	p.N1135*	ENST00000350721	NM_001184.3	1134	-/T																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	134	345	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
CDC73	0	MSKCC	GRCh37	1	193117054	193117054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	74	448	0	ENST00000367435.3:c.787C>T	p.Arg263Cys	p.R263C	ENST00000367435	NM_024529.4	263	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	81	356	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	103	557	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
MED12	0	MSKCC	GRCh37	X	70361148	70361149	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	23	196	2	ENST00000374080.3:c.6338_6339insCCA	p.Gln2112_Gln2113insHis	p.Q2112_Q2113insH	ENST00000374080		2112	-/CAC																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	72	333	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
TSHR	0	MSKCC	GRCh37	14	81554355	81554355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	88	404	0	ENST00000298171.2:c.379del	p.Leu127SerfsTer2	p.L127Sfs*2	ENST00000298171	NM_000369.2	125	ctC/ct																																																																														
PTCH1	0	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	13	210	0	ENST00000331920.6:c.114delG	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157505462	157505462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	98	380	0	ENST00000346085.5:c.3443A>G	p.Tyr1148Cys	p.Y1148C	ENST00000346085	NM_020732.3	1148	tAc/tGc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367288	50367288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	72	354	0	ENST00000331340.3:c.95C>T	p.Pro32Leu	p.P32L	ENST00000331340	NM_006060.4	32	cCg/cTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346158	89346158	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	25	154	0	ENST00000301030.4:c.6792del	p.Ala2265ProfsTer72	p.A2265Pfs*72	ENST00000301030	NM_001256183.1	2264	ccC/cc																																																																														
TCF3	0	MSKCC	GRCh37	19	1620992	1620992	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	161	685	0	ENST00000344749.5:c.1068del	p.Val357TrpfsTer37	p.V357Wfs*37	ENST00000344749	NM_001136139.2	356	ccC/cc																																																																														
ARID2	0	MSKCC	GRCh37	12	46123837	46123837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	57	265	0	ENST00000334344.6:c.109delA	p.Ile37SerfsTer21	p.I37Sfs*21	ENST00000334344	NM_152641.2	35	Aaa/aa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106562	27106562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	141	518	0	ENST00000324856.7:c.6176del	p.Asn2059ThrfsTer76	p.N2059Tfs*76	ENST00000324856	NM_006015.4	2058	gAa/ga																																																																														
GLI1	2735	MSKCC	GRCh37	12	57863319	57863319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	114	494	0	ENST00000228682.2:c.1418del	p.Gly473AlafsTer40	p.G473Afs*40	ENST00000228682	NM_005269.2	472	Ggg/gg																																																																														
EZH2	0	MSKCC	GRCh37	7	148504761	148504761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	120	459	0	ENST00000320356.2:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000320356	NM_004456.4	745	Gaa/Aaa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	105	394	1	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																														
ATR	0	MSKCC	GRCh37	3	142186895	142186895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	58	320	1	ENST00000350721.4:c.6568C>T	p.Arg2190Cys	p.R2190C	ENST00000350721	NM_001184.3	2190	Cgt/Tgt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401004	139401004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	115	473	0	ENST00000277541.6:c.3989G>A	p.Arg1330His	p.R1330H	ENST00000277541	NM_017617.3	1330	cGc/cAc																																																																														
ALK	0	MSKCC	GRCh37	2	29462643	29462643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	123	570	0	ENST00000389048.3:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000389048	NM_004304.4	753	cGg/cAg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	65	314	1	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																																																														
MSH6	2956	MSKCC	GRCh37	2	48025857	48025857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1472949451		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	69	345	0	ENST00000234420.5:c.741del	p.Lys247AsnfsTer32	p.K247Nfs*32	ENST00000234420	NM_000179.2	245	atA/at																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821959	72821959	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	42	197	0	ENST00000268489.5:c.10216G>C	p.Gly3406Arg	p.G3406R	ENST00000268489	NM_006885.3	3406	Ggg/Cgg																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2492097	2492097	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	139	639	2	ENST00000355716.4:c.500delC	p.Pro167ArgfsTer23	p.P167Rfs*23	ENST00000355716	NM_003820.2	165	tgC/tg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37873597	37873597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	112	537	0	ENST00000269571.5:c.1762G>A	p.Ala588Thr	p.A588T	ENST00000269571		588	Gcc/Acc																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	119	480	1	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	129	494	3	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12043203	12043203	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	61	349	0	ENST00000353533.5:c.1086+2T>C		p.X362_splice	ENST00000353533	NM_003010.3	362																																																																															
PTPRT	0	MSKCC	GRCh37	20	41306544	41306544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	89	422	0	ENST00000373198.4:c.1115C>T	p.Pro372Leu	p.P372L	ENST00000373198	NM_133170.3	372	cCg/cTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36229011	36229011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	79	586	0	ENST00000222270.7:c.7795delG	p.Glu2599ArgfsTer15	p.E2599Rfs*15	ENST00000222270	NM_014727.1	2597	gcG/gc																																																																														
MED12	0	MSKCC	GRCh37	X	70356269	70356269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	78	187	0	ENST00000374080.3:c.5164C>T	p.Arg1722Trp	p.R1722W	ENST00000374080		1722	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435199	49435199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	73	317	0	ENST00000301067.7:c.6354delC	p.Ala2119LeufsTer25	p.A2119Lfs*25	ENST00000301067	NM_003482.3	2118	ccC/cc																																																																														
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	39	471	2	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																														
CD276	0	MSKCC	GRCh37	15	73994848	73994848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	25	83	0	ENST00000318443.5:c.332G>A	p.Arg111His	p.R111H	ENST00000318443	NM_001024736.1	111	cGc/cAc																																																																														
RB1	0	MSKCC	GRCh37	13	49039143	49039143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	70	239	0	ENST00000267163.4:c.2221C>T	p.Arg741Cys	p.R741C	ENST00000267163	NM_000321.2	741	Cgt/Tgt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993738	72993738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	90	295	0	ENST00000268489.5:c.307C>T	p.Arg103Cys	p.R103C	ENST00000268489	NM_006885.3	103	Cgc/Tgc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856434	111856434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	72	282	0	ENST00000341259.2:c.489delC	p.Thr165ProfsTer32	p.T165Pfs*32	ENST00000341259	NM_005475.2	162	gCc/gc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141595382	141595382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	112	551	1	ENST00000220592.5:c.51del	p.Ile18SerfsTer121	p.I18Sfs*121	ENST00000220592	NM_012154.3	17	ccC/cc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942232	71942232	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	68	282	0	ENST00000298229.2:c.1496C>T	p.Pro499Leu	p.P499L	ENST00000298229	NM_001567.3	499	cCg/cTg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780280	9780280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	68	421	0	ENST00000377346.4:c.1450T>C	p.Tyr484His	p.Y484H	ENST00000377346	NM_005026.3	484	Tac/Cac																																																																														
SPEN	0	MSKCC	GRCh37	1	16263923	16263923	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	127	600	0	ENST00000375759.3:c.10292T>A	p.Phe3431Tyr	p.F3431Y	ENST00000375759	NM_015001.2	3431	tTc/tAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105916	27105916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	97	348	2	ENST00000324856.7:c.5527C>T	p.His1843Tyr	p.H1843Y	ENST00000324856	NM_006015.4	1843	Cac/Tac																																																																														
MUTYH	0	MSKCC	GRCh37	1	45797951	45797951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	88	492	0	ENST00000372115.3:c.778C>T	p.Arg260Trp	p.R260W	ENST00000372115	NM_001048171.1	260	Cgg/Tgg																																																																														
CSDE1	0	MSKCC	GRCh37	1	115261337	115261337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	78	342	0	ENST00000438362.2:c.2384G>A	p.Arg795Gln	p.R795Q	ENST00000438362	NM_001242891.1	795	cGa/cAa																																																																														
GATA3	0	MSKCC	GRCh37	10	8100532	8100532	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	113	475	1	ENST00000346208.3:c.509del	p.Pro170GlnfsTer25	p.P170Qfs*25	ENST00000346208		169	aCc/ac																																																																														
RET	0	MSKCC	GRCh37	10	43601998	43601998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	113	531	2	ENST00000355710.3:c.1042C>T	p.Arg348Trp	p.R348W	ENST00000355710	NM_020975.4	348	Cgg/Tgg																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67202516	67202516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	103	459	2	ENST00000312629.5:c.1325C>A	p.Pro442His	p.P442H	ENST00000312629	NM_003952.2	442	cCc/cAc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118307639	118307639	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	112	503	0	ENST00000534358.1:c.416del	p.Gly139GlufsTer11	p.G139Efs*11	ENST00000534358	NM_005933.3	138	Ggg/gg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427545	49427545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	92	383	1	ENST00000301067.7:c.10943C>T	p.Pro3648Leu	p.P3648L	ENST00000301067	NM_003482.3	3648	cCg/cTg																																																																														
LATS2	0	MSKCC	GRCh37	13	21563282	21563282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	88	537	1	ENST00000382592.4:c.637G>A	p.Asp213Asn	p.D213N	ENST00000382592	NM_014572.2	213	Gac/Aac																																																																														
CDK8	0	MSKCC	GRCh37	13	26975674	26975675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	105	442	0	ENST00000381527.3:c.1189_1190dup	p.Gln397HisfsTer6	p.Q397Hfs*6	ENST00000381527	NM_001260.1	394	-/CA																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871732	35871732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	95	411	0	ENST00000216797.5:c.774G>T	p.Trp258Cys	p.W258C	ENST00000216797	NM_020529.2	258	tgG/tgT																																																																														
AXIN1	0	MSKCC	GRCh37	16	396895	396895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	147	589	0	ENST00000262320.3:c.131T>C	p.Phe44Ser	p.F44S	ENST00000262320	NM_003502.3	44	tTc/tCc																																																																														
SLX4	0	MSKCC	GRCh37	16	3634797	3634797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	152	575	4	ENST00000294008.3:c.4712C>T	p.Thr1571Met	p.T1571M	ENST00000294008	NM_032444.2	1571	aCg/aTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3842002	3842002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	92	341	0	ENST00000262367.5:c.1310G>A	p.Ser437Asn	p.S437N	ENST00000262367	NM_004380.2	437	aGt/aAt																																																																														
PALB2	0	MSKCC	GRCh37	16	23619314	23619314	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	53	439	0	ENST00000261584.4:c.3221T>C	p.Leu1074Pro	p.L1074P	ENST00000261584	NM_024675.3	1074	cTg/cCg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832058	72832058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	87	440	0	ENST00000268489.5:c.4523G>A	p.Ser1508Asn	p.S1508N	ENST00000268489	NM_006885.3	1508	aGt/aAt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72984466	72984466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	71	464	0	ENST00000268489.5:c.3118C>A	p.Leu1040Ile	p.L1040I	ENST00000268489	NM_006885.3	1040	Ctc/Atc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347173	89347173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	60	370	1	ENST00000301030.4:c.5777del	p.Pro1926ArgfsTer37	p.P1926Rfs*37	ENST00000301030	NM_001256183.1	1926	cCg/cg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351124	89351124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	111	439	0	ENST00000301030.4:c.1826G>A	p.Ser609Asn	p.S609N	ENST00000301030	NM_001256183.1	609	aGc/aAc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879673	37879673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	91	500	0	ENST00000269571.5:c.2048G>A	p.Arg683Gln	p.R683Q	ENST00000269571		683	cGg/cAg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117738	70117739	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	100	541	0	ENST00000245479.2:c.210dup	p.Val71ArgfsTer181	p.V71Rfs*181	ENST00000245479	NM_000346.3	69	ttc/ttCc																																																																														
PIK3R2	5296	MSKCC	GRCh37	19	18279932	18279932	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1423694208		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	155	544	2	ENST00000222254.8:c.2015G>A	p.Arg672His	p.R672H	ENST00000222254	NM_005027.3	672	cGc/cAc																																																																														
UPF1	0	MSKCC	GRCh37	19	18965724	18965724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	152	640	1	ENST00000262803.5:c.1302G>T	p.Glu434Asp	p.E434D	ENST00000262803	NM_002911.3	434	gaG/gaT																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216188	36216188	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	131	445	0	ENST00000222270.7:c.3596G>C	p.Gly1199Ala	p.G1199A	ENST00000222270	NM_014727.1	1199	gGc/gCc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36229184	36229184	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	26	364	2	ENST00000222270.7:c.7874G>A	p.Gly2625Asp	p.G2625D	ENST00000222270	NM_014727.1	2625	gGc/gAc																																																																														
RRAS	0	MSKCC	GRCh37	19	50140130	50140130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	87	491	2	ENST00000246792.3:c.295C>T	p.Arg99Cys	p.R99C	ENST00000246792	NM_006270.3	99	Cgt/Tgt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469629	25469629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	125	484	1	ENST00000264709.3:c.1139C>T	p.Ala380Val	p.A380V	ENST00000264709	NM_175629.2	380	gCg/gTg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25964965	25964965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	102	366	2	ENST00000435504.4:c.4241G>A	p.Gly1414Asp	p.G1414D	ENST00000435504		1414	gGc/gAc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46607487	46607487	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	130	556	2	ENST00000263734.3:c.1681delC	p.Gln561SerfsTer7	p.Q561Sfs*7	ENST00000263734	NM_001430.4	559	aCc/ac																																																																														
REL	0	MSKCC	GRCh37	2	61144018	61144018	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	45	292	0	ENST00000295025.8:c.405del	p.Lys135AsnfsTer3	p.K135Nfs*3	ENST00000295025	NM_002908.2	134	gAa/ga																																																																														
NCOA3	0	MSKCC	GRCh37	20	46279815	46279820	+	inframe_deletion	In_Frame_Del	DEL	GCAGCA	GCAGCA	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	22	332	1	ENST00000371998.3:c.3756_3761del	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1247	atGCAGCAg/atg																																																																														
AURKA	0	MSKCC	GRCh37	20	54945542	54945542	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs200181472		P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	142	678	1	ENST00000312783.6:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000312783	NM_198436.1	343	cGg/cAg																																																																														
RHOA	0	MSKCC	GRCh37	3	49397752	49397752	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	134	499	0	ENST00000418115.1:c.472G>T	p.Glu158Ter	p.E158*	ENST00000418115	NM_001664.2	158	Gag/Tag																																																																														
MST1R	0	MSKCC	GRCh37	3	49940111	49940111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	101	428	0	ENST00000296474.3:c.932C>G	p.Ala311Gly	p.A311G	ENST00000296474	NM_002447.2	311	gCc/gGc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134825389	134825389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	99	437	0	ENST00000398015.3:c.905C>A	p.Thr302Asn	p.T302N	ENST00000398015	NM_004441.4	302	aCc/aAc																																																																														
BCL6	0	MSKCC	GRCh37	3	187442853	187442853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	79	289	1	ENST00000232014.4:c.1853G>A	p.Arg618His	p.R618H	ENST00000232014	NM_001130845.1	618	cGt/cAt																																																																														
TET2	0	MSKCC	GRCh37	4	106196928	106196928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	20	263	1	ENST00000380013.4:c.5261G>A	p.Gly1754Asp	p.G1754D	ENST00000380013	NM_001127208.2	1754	gGt/gAt																																																																														
NSD1	0	MSKCC	GRCh37	5	176662870	176662870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	86	454	0	ENST00000439151.2:c.3845T>C	p.Leu1282Ser	p.L1282S	ENST00000439151	NM_022455.4	1282	tTg/tCg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93964472	93964472	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	96	525	0	ENST00000369303.4:c.2425C>T	p.Gln809Ter	p.Q809*	ENST00000369303	NM_004440.3	809	Cag/Tag																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200183	138200183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	69	351	0	ENST00000237289.4:c.1601G>A	p.Gly534Glu	p.G534E	ENST00000237289	NM_001270507.1	534	gGg/gAg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100434	157100445	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGG	GGCGGCGGCGGG	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	13	20	1	ENST00000346085.5:c.1383_1394del	p.Ala462_Gly465del	p.A462_G465del	ENST00000346085	NM_020732.3	457	gcGGCGGCGGCGGGg/gcg																																																																														
SOX17	0	MSKCC	GRCh37	8	55371882	55371882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	58	211	0	ENST00000297316.4:c.572G>A	p.Gly191Asp	p.G191D	ENST00000297316	NM_022454.3	191	gGc/gAc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87325566	87325566	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	23	350	0	ENST00000277120.3:c.443A>G	p.Asn148Ser	p.N148S	ENST00000277120		148	aAt/aGt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98242751	98242751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	99	381	0	ENST00000331920.6:c.866A>G	p.His289Arg	p.H289R	ENST00000331920	NM_000264.3	289	cAt/cGt																																																																														
TSC1	0	MSKCC	GRCh37	9	135778112	135778112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	83	468	0	ENST00000298552.3:c.2271A>C	p.Glu757Asp	p.E757D	ENST00000298552	NM_001162426.1	757	gaA/gaC																																																																														
TSC1	0	MSKCC	GRCh37	9	135800991	135800993	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	45	370	0	ENST00000298552.3:c.344_346del	p.Ser115del	p.S115del	ENST00000298552	NM_001162426.1	115	tCTTta/tta																																																																														
RXRA	0	MSKCC	GRCh37	9	137218489	137218489	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	20	128	0	ENST00000481739.1:c.12A>T	p.Lys4Asn	p.K4N	ENST00000481739	NM_002957.4	4	aaA/aaT																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15838418	15838418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	165	198	0	ENST00000307771.7:c.916C>T	p.Arg306Trp	p.R306W	ENST00000307771	NM_005089.3	306	Cgg/Tgg																																																																														
AR	0	MSKCC	GRCh37	X	66766195	66766195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	45	139	0	ENST00000374690.3:c.1207G>A	p.Ala403Thr	p.A403T	ENST00000374690	NM_000044.3	403	Gcg/Acg																																																																														
MED12	0	MSKCC	GRCh37	X	70347951	70347951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	23	270	0	ENST00000374080.3:c.3190G>T	p.Gly1064Trp	p.G1064W	ENST00000374080		1064	Ggg/Tgg																																																																														
MLH1	0	MSKCC	GRCh37	3	37050384	37050387	+	frameshift_variant	Frame_Shift_Ins	INS	AAGT	AAGT	GGAAGC			P-0025883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	64	424	0	ENST00000231790.2:c.533_536delinsGGAAGC	p.Glu178GlyfsTer25	p.E178Gfs*25	ENST00000231790	NM_000249.3	178	gAAGTt/gGGAAGCt																																																																														
TP63	0	MSKCC	GRCh37	3	189586470	189586470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	128	431	0	ENST00000264731.3:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000264731	NM_003722.4	365	tCg/tTg																																																																														
CBL	0	MSKCC	GRCh37	11	119156088	119156088	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187952822		P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	46	509	0	ENST00000264033.4:c.1753C>T	p.Arg585Cys	p.R585C	ENST00000264033	NM_005188.3	585	Cgc/Tgc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	134	297	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	118	406	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	74	391	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	51	456	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
STK11	6794	MSKCC	GRCh37	19	1207153	1207155	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1414068445		P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	69	617	0	ENST00000326873.7:c.250_252del	p.Lys84del	p.K84del	ENST00000326873	NM_000455.4	81	AAG/-																																																																														
NF1	0	MSKCC	GRCh37	17	29527568	29527569	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	34	523	0	ENST00000358273.4:c.1019_1020delCT	p.Ser340CysfsTer12	p.S340Cfs*12	ENST00000358273	NM_001042492.2	339	aaCTct/aact																																																																														
JAK1	0	MSKCC	GRCh37	1	65323452	65323452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	28	351	1	ENST00000342505.4:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000342505	NM_002227.2	449	Gcc/Acc																																																																														
CIC	0	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	95	504	2	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																														
MSH2	0	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	196	485	0	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																																																														
XPO1	0	MSKCC	GRCh37	2	61711074	61711074	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	95	383	0	ENST00000401558.2:c.2675C>T	p.Thr892Met	p.T892M	ENST00000401558	NM_003400.3	892	aCg/aTg																																																																														
CTCF	0	MSKCC	GRCh37	16	67662384	67662384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112926498		P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	49	536	2	ENST00000264010.4:c.1630C>T	p.Arg544Cys	p.R544C	ENST00000264010	NM_006565.3	544	Cgc/Tgc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	60	555	0	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																														
NF1	0	MSKCC	GRCh37	17	29497003	29497003	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	57	268	1	ENST00000358273.4:c.574C>T	p.Arg192Ter	p.R192*	ENST00000358273	NM_001042492.2	192	Cga/Tga																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380350	14380350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	63	254	0	ENST00000256196.4:c.67G>A	p.Gly23Ser	p.G23S	ENST00000256196		23	Ggc/Agc																																																																														
NTHL1	0	MSKCC	GRCh37	16	2096133	2096133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	47	435	0	ENST00000219066.1:c.374delC	p.Pro125GlnfsTer12	p.P125Qfs*12	ENST00000219066	NM_002528.5	125	cCa/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7579705	7579705	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201753350		P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	72	549	0	ENST00000269305.4:c.91G>A	p.Val31Ile	p.V31I	ENST00000269305	NM_001126112.2	31	Gtt/Att																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	50	599	3	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610306	10610306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	99	610	1	ENST00000171111.5:c.404G>A	p.Arg135His	p.R135H	ENST00000171111	NM_203500.1	135	cGc/cAc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118365112	118365112	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	53	415	0	ENST00000534358.1:c.5288G>A	p.Arg1763Gln	p.R1763Q	ENST00000534358	NM_005933.3	1763	cGg/cAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101165	27101165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	97	537	0	ENST00000324856.7:c.4447G>A	p.Gly1483Ser	p.G1483S	ENST00000324856	NM_006015.4	1483	Ggc/Agc																																																																														
PGR	0	MSKCC	GRCh37	11	100998997	100998997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	30	362	0	ENST00000325455.5:c.805C>A	p.Pro269Thr	p.P269T	ENST00000325455	NM_001202474.3	269	Ccc/Acc																																																																														
ARID2	0	MSKCC	GRCh37	12	46246471	46246471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	33	297	0	ENST00000334344.6:c.4565C>T	p.Thr1522Ile	p.T1522I	ENST00000334344	NM_152641.2	1522	aCt/aTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434945	49434945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	53	416	0	ENST00000301067.7:c.6608C>T	p.Thr2203Met	p.T2203M	ENST00000301067	NM_003482.3	2203	aCg/aTg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912973	32912973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	137	549	0	ENST00000380152.3:c.4481G>A	p.Ser1494Asn	p.S1494N	ENST00000380152		1494	aGt/aAt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43701142	43701144	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	99	446	0	ENST00000382044.4:c.5551_5553del	p.Tyr1851del	p.Y1851del	ENST00000382044	NM_001141980.1	1851	TAT/-																																																																														
BLM	0	MSKCC	GRCh37	15	91293158	91293158	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	41	403	0	ENST00000355112.3:c.660G>T	p.Leu220Phe	p.L220F	ENST00000355112	NM_000057.2	220	ttG/ttT																																																																														
IGF1R	0	MSKCC	GRCh37	15	99456394	99456394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	99	440	0	ENST00000268035.6:c.1711C>A	p.Leu571Met	p.L571M	ENST00000268035	NM_000875.3	571	Ctg/Atg																																																																														
GPS2	0	MSKCC	GRCh37	17	7216736	7216737	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTGT			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	25	358	0	ENST00000380728.2:c.681_686dup	p.Gln228_Pro229dup	p.Q228_P229dup	ENST00000380728		228	ccc/ccACAGCCc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15938174	15938174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	35	458	0	ENST00000268712.3:c.7040C>T	p.Thr2347Met	p.T2347M	ENST00000268712	NM_006311.3	2347	aCg/aTg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600335	10600335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	52	476	2	ENST00000171111.5:c.1520G>A	p.Arg507Gln	p.R507Q	ENST00000171111	NM_203500.1	507	cGa/cAa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602684	10602684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	64	563	0	ENST00000171111.5:c.894G>T	p.Lys298Asn	p.K298N	ENST00000171111	NM_203500.1	298	aaG/aaT																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213971	36213971	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	47	553	0	ENST00000222270.7:c.2801del	p.Gly934GlufsTer52	p.G934Efs*52	ENST00000222270	NM_014727.1	933	Ggg/gg																																																																														
POLD1	0	MSKCC	GRCh37	19	50921124	50921124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	83	514	1	ENST00000440232.2:c.3244C>T	p.Arg1082Cys	p.R1082C	ENST00000440232	NM_002691.3	1082	Cgc/Tgc																																																																														
ALK	0	MSKCC	GRCh37	2	30143421	30143421	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	54	322	0	ENST00000389048.3:c.105del	p.Pro36ArgfsTer45	p.P36Rfs*45	ENST00000389048	NM_004304.4	35	ggG/gg																																																																														
ERCC3	0	MSKCC	GRCh37	2	128015218	128015218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	49	413	2	ENST00000285398.2:c.2303C>T	p.Ala768Val	p.A768V	ENST00000285398	NM_000122.1	768	gCg/gTg																																																																														
BCL6	0	MSKCC	GRCh37	3	187451363	187451363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	56	367	0	ENST00000232014.4:c.119G>A	p.Arg40His	p.R40H	ENST00000232014	NM_001130845.1	40	cGt/cAt																																																																														
NPM1	0	MSKCC	GRCh37	5	170819803	170819803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	41	553	2	ENST00000296930.5:c.442G>T	p.Gly148Cys	p.G148C	ENST00000296930	NM_002520.6	148	Ggt/Tgt																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5549387	5549387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	58	505	0	ENST00000397747.3:c.414G>T	p.Glu138Asp	p.E138D	ENST00000397747	NM_025239.3	138	gaG/gaT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341872	8341872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	38	521	0	ENST00000356435.5:c.4768G>A	p.Ala1590Thr	p.A1590T	ENST00000356435		1590	Gcc/Acc																																																																														
AR	0	MSKCC	GRCh37	X	66765233	66765233	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	38	269	0	ENST00000374690.3:c.245C>G	p.Thr82Ser	p.T82S	ENST00000374690	NM_000044.3	82	aCt/aGt																																																																														
STAG2	0	MSKCC	GRCh37	X	123196792	123196792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	47	477	2	ENST00000218089.9:c.1679G>T	p.Arg560Met	p.R560M	ENST00000218089	NM_001042749.1	560	aGg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	48	481	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																														
JAK1	0	MSKCC	GRCh37	1	65307276	65307277	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0025886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	33	321	0	ENST00000342505.4:c.2411_2412del	p.Arg804IlefsTer3	p.R804Ifs*3	ENST00000342505	NM_002227.2	804	aGA/a																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457630	67457630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	62	483	1	ENST00000327367.4:c.440C>T	p.Pro147Leu	p.P147L	ENST00000327367	NM_005902.3	147	cCg/cTg																																																																														
CDH1	0	MSKCC	GRCh37	16	68844112	68844112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	91	422	1	ENST00000261769.5:c.700G>T	p.Ala234Ser	p.A234S	ENST00000261769	NM_004360.3	234	Gct/Tct																																																																														
APC	0	MSKCC	GRCh37	5	112175422	112175435	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGGAGACCCCAC	TCAGGAGACCCCAC	-			P-0025886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	24	225	0	ENST00000257430.4:c.4134_4147del	p.Gln1378HisfsTer3	p.Q1378Hfs*3	ENST00000257430	NM_000038.5	1377	gtTCAGGAGACCCCACtc/gttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	84	566	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0025913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	210	396	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0025913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	210	396	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	102	689	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0025913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	210	396	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	213	465	1	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
WT1	0	MSKCC	GRCh37	11	32456804	32456804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	107	469	0	ENST00000332351.3:c.88C>A	p.Gln30Lys	p.Q30K	ENST00000332351	NM_024426.4	30	Cag/Aag																																																																														
RET	0	MSKCC	GRCh37	10	43615153	43615153	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	93	537	0	ENST00000355710.3:c.2568del	p.Trp856CysfsTer13	p.W856Cfs*13	ENST00000355710	NM_020975.4	856	tGg/tg																																																																														
SUFU	0	MSKCC	GRCh37	10	104356906	104356906	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	171	421	0	ENST00000369902.3:c.766G>T	p.Asp256Tyr	p.D256Y	ENST00000369902	NM_016169.3	256	Gac/Tac																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425098	49425098	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	212	605	1	ENST00000301067.7:c.13390C>T	p.Gln4464Ter	p.Q4464*	ENST00000301067	NM_003482.3	4464	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440398	49440398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	100	610	1	ENST00000301067.7:c.4412G>A	p.Cys1471Tyr	p.C1471Y	ENST00000301067	NM_003482.3	1471	tGc/tAc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481361	56481361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	306	630	0	ENST00000267101.3:c.548G>T	p.Cys183Phe	p.C183F	ENST00000267101	NM_001982.3	183	tGt/tTt																																																																														
IRS2	0	MSKCC	GRCh37	13	110435151	110435151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	57	441	0	ENST00000375856.3:c.3250C>T	p.Pro1084Ser	p.P1084S	ENST00000375856	NM_003749.2	1084	Ccg/Tcg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31375211	31375211	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147945634		P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	117	676	1	ENST00000328111.2:c.608C>T	p.Pro203Leu	p.P203L	ENST00000328111	NM_006892.3	203	cCg/cTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187560902	187560902	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	181	498	0	ENST00000441802.2:c.3616G>T	p.Glu1206Ter	p.E1206*	ENST00000441802	NM_005245.3	1206	Gaa/Taa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56171132	56171132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	99	263	0	ENST00000399503.3:c.1960G>T	p.Ala654Ser	p.A654S	ENST00000399503	NM_005921.1	654	Gct/Tct																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32185798	32185798	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	164	526	0	ENST00000375023.3:c.1598A>G	p.Asn533Ser	p.N533S	ENST00000375023	NM_004557.3	533	aAc/aGc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527537	157527537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	225	498	0	ENST00000346085.5:c.5262G>T	p.Lys1754Asn	p.K1754N	ENST00000346085	NM_020732.3	1754	aaG/aaT																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139405685	139405685	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	197	710	0	ENST00000277541.6:c.2506del	p.Ser836AlafsTer40	p.S836Afs*40	ENST00000277541	NM_017617.3	836	Agc/gc																																																																														
RBM10	0	MSKCC	GRCh37	X	47039821	47039821	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	274	602	0	ENST00000329236.7:c.930C>G	p.Asp310Glu	p.D310E	ENST00000329236	NM_001204466.1	310	gaC/gaG																																																																														
ATRX	0	MSKCC	GRCh37	X	76814178	76814178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	194	390	0	ENST00000373344.5:c.6466C>A	p.Gln2156Lys	p.Q2156K	ENST00000373344	NM_000489.3	2156	Caa/Aaa																																																																														
EGFR	0	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	330	583	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																														
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	300	613	0	ENST00000275493.2:c.2582T>G	p.Leu861Arg	p.L861R	ENST00000275493	NM_005228.3	861	cTg/cGg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	138	365	1	ENST00000342988.3:c.1609G>A	p.Asp537Asn	p.D537N	ENST00000342988	NM_005359.5	537	Gac/Aac																																																																														
PBRM1	0	MSKCC	GRCh37	3	52702546	52702546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	183	539	0	ENST00000394830.3:c.352C>T	p.Leu118Phe	p.L118F	ENST00000394830	NM_018313.4	118	Ctt/Ttt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	60	539	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0025920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	50	428	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9770571	9770571	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143116020		P-0025920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	50	621	1	ENST00000377346.4:c.58G>A	p.Val20Ile	p.V20I	ENST00000377346	NM_005026.3	20	Gtt/Att																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0025920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	24	393	4	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434510	121434510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	94	639	0	ENST00000257555.6:c.1274C>T	p.Thr425Met	p.T425M	ENST00000257555		425	aCg/aTg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981535	201981536	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	65	946	0	ENST00000359651.3:c.451dup	p.Gln151ProfsTer10	p.Q151Pfs*10	ENST00000359651		150	ttc/ttCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	41	620	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0025921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	47	880	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
GATA1	0	MSKCC	GRCh37	X	48650325	48650325	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184815507		P-0025921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	48	418	0	ENST00000376670.3:c.295G>A	p.Gly99Ser	p.G99S	ENST00000376670	NM_002049.3	99	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	85	563	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ATM	0	MSKCC	GRCh37	11	108121578	108121641	+	frameshift_variant	Frame_Shift_Del	DEL	TGCATTGTGTCAAGACAAGAGGTCAAACCTAGAAAGCTCACAAAAGTCAGATTTATTAAAACTC	TGCATTGTGTCAAGACAAGAGGTCAAACCTAGAAAGCTCACAAAAGTCAGATTTATTAAAACTC	CGCAT			P-0025922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	73	591	2	ENST00000278616.4:c.1386_1449delinsCGCAT	p.Cys465GlufsTer2	p.C465Efs*2	ENST00000278616	NM_000051.3	462	gtTGCATTGTGTCAAGACAAGAGGTCAAACCTAGAAAGCTCACAAAAGTCAGATTTATTAAAACTC/gtCGCAT																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178937044	178937044	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	51	445	0	ENST00000263967.3:c.1725T>G	p.Asn575Lys	p.N575K	ENST00000263967	NM_006218.2	575	aaT/aaG																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67592031	67592031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	58	293	0	ENST00000274335.5:c.1847T>C	p.Leu616Ser	p.L616S	ENST00000274335		616	tTg/tCg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115920	8115921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACCCGCCATCCAGCCTGT			P-0025924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	86	507	0	ENST00000346208.3:c.1268_1286dup	p.Phe430ProfsTer83	p.F430Pfs*83	ENST00000346208		422	-/CACCCGCCATCCAGCCTGT																																																																														
ERCC3	0	MSKCC	GRCh37	2	128028995	128028995	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	190	686	0	ENST00000285398.2:c.1862A>T	p.Asn621Ile	p.N621I	ENST00000285398	NM_000122.1	621	aAt/aTt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513263	106513263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	229	444	0	ENST00000359195.3:c.2167G>A	p.Gly723Ser	p.G723S	ENST00000359195	NM_002649.2	723	Ggc/Agc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877140	151877140	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	307	552	0	ENST00000262189.6:c.7221del	p.Ser2408HisfsTer44	p.S2408Hfs*44	ENST00000262189	NM_170606.2	2407	ggG/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0025925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	167	654	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0025925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	106	324	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	156	583	2	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																														
MUTYH	0	MSKCC	GRCh37	1	45799185	45799187	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0025925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	123	591	2	ENST00000372115.3:c.204_206del	p.Ser69del	p.S69del	ENST00000372115	NM_001048171.1	68	tcCTCa/tca																																																																														
RPTOR	0	MSKCC	GRCh37	17	78896539	78896539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	142	760	2	ENST00000306801.3:c.2536C>T	p.Arg846Trp	p.R846W	ENST00000306801	NM_020761.2	846	Cgg/Tgg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715629	30715629	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	72	368	0	ENST00000359013.4:c.1363del	p.Leu455Ter	p.L455*	ENST00000359013	NM_001024847.2	454	gtC/gt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921524	178921525	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAAAAATTCTTTGTGCAACCTACG			P-0025925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	29	594	0	ENST00000263967.3:c.1008_1031dup	p.Lys337_Val344dup	p.K337_V344dup	ENST00000263967	NM_006218.2	337	ata/aTAAAAATTCTTTGTGCAACCTACGta																																																																														
FBXW7	0	MSKCC	GRCh37	4	153268083	153268083	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0025925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	84	260	0	ENST00000281708.4:c.725A>C	p.Gln242Pro	p.Q242P	ENST00000281708	NM_033632.3	242	cAg/cCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	299	539	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	105	468	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112174091	112174094	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	154	324	0	ENST00000257430.4:c.2802_2805delTTAC	p.Tyr935IlefsTer19	p.Y935Ifs*19	ENST00000257430	NM_000038.5	934	ACTTac/ac																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439717	51439719	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	68	331	0	ENST00000262662.1:c.284_286del	p.Asp95del	p.D95del	ENST00000262662		94	gcTGAt/gct																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175516	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAGTGAAC	CAGAGTGAAC	-			P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	147	320	1	ENST00000257430.4:c.4218_4227del	p.Gln1406HisfsTer6	p.Q1406Hfs*6	ENST00000257430	NM_000038.5	1406	CAGAGTGAACca/ca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859693	151859693	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146298908		P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	53	294	0	ENST00000262189.6:c.10969G>A	p.Asp3657Asn	p.D3657N	ENST00000262189	NM_170606.2	3657	Gac/Aac																																																																														
SOX17	0	MSKCC	GRCh37	8	55372202	55372202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	59	192	1	ENST00000297316.4:c.892G>A	p.Gly298Ser	p.G298S	ENST00000297316	NM_022454.3	298	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017605-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			374	459	749	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911387	32911387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0017605-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	287	528	0	ENST00000380152.3:c.2895G>T	p.Met965Ile	p.M965I	ENST00000380152		965	atG/atT																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061284	38061285	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGAGCGT			P-0017605-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			750	173	687	0	ENST00000250448.2:c.696_704dup	p.Arg233_Pro235dup	p.R233_P235dup	ENST00000250448	NM_004496.3	233	ccg/ccACGCTCCCCg																																																																														
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	525	747	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	285	546	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385177	41385177	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201332786		P-0025711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	451	669	1	ENST00000373198.4:c.784G>A	p.Val262Ile	p.V262I	ENST00000373198	NM_133170.3	262	Gtc/Atc																																																																														
PTEN	0	MSKCC	GRCh37	10	89717727	89717727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	505	490	0	ENST00000371953.3:c.752G>T	p.Gly251Val	p.G251V	ENST00000371953	NM_000314.4	251	gGt/gTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0025713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	67	783	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	44	495	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MDM2	0	MSKCC	GRCh37	12	69233079	69233180	+	inframe_deletion	In_Frame_Del	DEL	ATGAAATGAATCCCCCCCTTCCATCACATTGCAACAGATGTTGGGCCCTTCGTGAGAATTGGCTTCCTGAAGATAAAGGGAAAGATAAAGGGGAAATCTCTG	ATGAAATGAATCCCCCCCTTCCATCACATTGCAACAGATGTTGGGCCCTTCGTGAGAATTGGCTTCCTGAAGATAAAGGGAAAGATAAAGGGGAAATCTCTG	-			P-0025713-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	66	448	0	ENST00000462284.1:c.945_1046del	p.Asn315_Glu349delinsLys	p.N315_E349delinsK	ENST00000462284	NM_002392.5	315	aATGAAATGAATCCCCCCCTTCCATCACATTGCAACAGATGTTGGGCCCTTCGTGAGAATTGGCTTCCTGAAGATAAAGGGAAAGATAAAGGGGAAATCTCTGag/aag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178947865	178947865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	84	424	3	ENST00000263967.3:c.2740G>A	p.Gly914Arg	p.G914R	ENST00000263967	NM_006218.2	914	Gga/Aga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	161	380	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	180	478	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112154	115112154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	37	393	2	ENST00000257566.3:c.1586del	p.Gly529AlafsTer103	p.G529Afs*103	ENST00000257566	NM_016569.3	529	gGc/gc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	189	465	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738411	145738416	+	inframe_deletion	In_Frame_Del	DEL	GGTGCA	GGTGCA	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	35	484	0	ENST00000428558.2:c.2569_2574delTGCACC	p.Cys857_Thr858del	p.C857_T858del	ENST00000428558	NM_004260.3	857	TGCACC/-																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	32	455	2	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	126	344	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	46	356	0	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	26	202	2	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																														
MYCN	0	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	105	611	9	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																																																														
CASP8	0	MSKCC	GRCh37	2	202149728	202149728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	190	527	0	ENST00000358485.4:c.1173del	p.Ile392SerfsTer4	p.I392Sfs*4	ENST00000358485	NM_001080125.1	390	gCc/gc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	142	487	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	61	317	0	ENST00000374080.3:c.130G>T	p.Gly44Cys	p.G44C	ENST00000374080		44	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	104	576	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156845901	156845901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	214	626	1	ENST00000524377.1:c.1531G>A	p.Val511Met	p.V511M	ENST00000524377	NM_002529.3	511	Gtg/Atg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244454	46244454	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	43	437	0	ENST00000334344.6:c.2552del	p.Pro851HisfsTer4	p.P851Hfs*4	ENST00000334344	NM_152641.2	850	Ccc/cc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	139	375	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696410	47696410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	58	604	1	ENST00000347630.2:c.413G>A	p.Arg138His	p.R138H	ENST00000347630	NM_001007230.1	138	cGt/cAt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	63	457	2	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
KLF4	0	MSKCC	GRCh37	9	110249887	110249887	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	28	324	1	ENST00000374672.4:c.788T>C	p.Val263Ala	p.V263A	ENST00000374672	NM_004235.4	263	gTg/gCg																																																																														
CBL	0	MSKCC	GRCh37	11	119142446	119142446	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	117	425	1	ENST00000264033.4:c.445C>T	p.Arg149Ter	p.R149*	ENST00000264033	NM_005188.3	149	Cga/Tga																																																																														
LATS1	0	MSKCC	GRCh37	6	150004238	150004239	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	139	405	0	ENST00000253339.5:c.1986dup	p.Gln663ThrfsTer5	p.Q663Tfs*5	ENST00000253339		662	-/A																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	219	575	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306553	41306553	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	44	449	1	ENST00000373198.4:c.1106del	p.Gly369ValfsTer28	p.G369Vfs*28	ENST00000373198	NM_133170.3	369	gGt/gt																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911132	29911132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	35	477	2	ENST00000376809.5:c.431G>A	p.Gly144Asp	p.G144D	ENST00000376809	NM_002116.7	144	gGc/gAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	271	701	6	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123263369	123263369	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	49	356	0	ENST00000358487.5:c.1374del	p.Met459CysfsTer23	p.M459Cfs*23	ENST00000358487	NM_000141.4	458	ccC/cc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	120	629	5	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	49	523	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
MEN1	0	MSKCC	GRCh37	11	64572272	64572272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	140	340	1	ENST00000337652.1:c.1382G>A	p.Arg461His	p.R461H	ENST00000337652	NM_130803.2	461	cGc/cAc																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910804	29910804	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	43	414	0	ENST00000376809.5:c.343+1G>A		p.X115_splice	ENST00000376809	NM_002116.7	115																																																																															
PTPRS	0	MSKCC	GRCh37	19	5212248	5212248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	113	395	2	ENST00000357368.4:c.4783C>T	p.Arg1595Cys	p.R1595C	ENST00000357368	NM_002850.3	1595	Cgc/Tgc																																																																														
SESN2	0	MSKCC	GRCh37	1	28599271	28599272	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	64	694	0	ENST00000253063.3:c.721_722del	p.Pro241LysfsTer12	p.P241Kfs*12	ENST00000253063	NM_031459.4	239	agCCcc/agcc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138911	64138911	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	99	302	0	ENST00000334205.4:c.2281del	p.Ala761ProfsTer23	p.A761Pfs*23	ENST00000334205	NM_003942.2	760	Ggg/gg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420063	49420063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201628357		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	197	474	1	ENST00000301067.7:c.15686G>A	p.Arg5229His	p.R5229H	ENST00000301067	NM_003482.3	5229	cGc/cAc																																																																														
TBX3	0	MSKCC	GRCh37	12	115109941	115109941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	54	402	0	ENST00000257566.3:c.1937C>A	p.Pro646Gln	p.P646Q	ENST00000257566	NM_016569.3	646	cCg/cAg																																																																														
YES1	0	MSKCC	GRCh37	18	724485	724485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	126	444	0	ENST00000314574.4:c.1571C>A	p.Ser524Tyr	p.S524Y	ENST00000314574	NM_005433.3	524	tCc/tAc																																																																														
BRD4	0	MSKCC	GRCh37	19	15366255	15366255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	156	476	1	ENST00000263377.2:c.1900G>A	p.Val634Met	p.V634M	ENST00000263377	NM_058243.2	634	Gtg/Atg																																																																														
BABAM1	0	MSKCC	GRCh37	19	17389832	17389832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	228	665	3	ENST00000359435.4:c.965C>T	p.Ala322Val	p.A322V	ENST00000359435	NM_001033549.1	322	gCc/gTc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803721	1803721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	194	503	0	ENST00000260795.2:c.899C>T	p.Pro300Leu	p.P300L	ENST00000260795		300	cCg/cTg																																																																														
KDR	0	MSKCC	GRCh37	4	55976689	55976689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	166	478	0	ENST00000263923.4:c.1136C>T	p.Ala379Val	p.A379V	ENST00000263923	NM_002253.2	379	gCg/gTg																																																																														
PNRC1	0	MSKCC	GRCh37	6	89790905	89790905	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	161	372	0	ENST00000336032.3:c.292C>T	p.Arg98Ter	p.R98*	ENST00000336032	NM_006813.2	98	Cga/Tga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522202	157522202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	222	483	1	ENST00000346085.5:c.4474G>T	p.Gly1492Cys	p.G1492C	ENST00000346085	NM_020732.3	1492	Ggc/Tgc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739431	145739431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	111	400	0	ENST00000428558.2:c.1939C>T	p.Arg647Cys	p.R647C	ENST00000428558	NM_004260.3	647	Cgc/Tgc																																																																														
JUN	0	MSKCC	GRCh37	1	59248100	59248100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	29	125	0	ENST00000371222.2:c.643A>G	p.Met215Val	p.M215V	ENST00000371222	NM_002228.3	215	Atg/Gtg																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67198878	67198878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	81	483	1	ENST00000312629.5:c.349C>T	p.Arg117Trp	p.R117W	ENST00000312629	NM_003952.2	117	Cgg/Tgg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244292	46244292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	51	388	1	ENST00000334344.6:c.2386G>A	p.Val796Ile	p.V796I	ENST00000334344	NM_152641.2	796	Gtc/Atc																																																																														
POLE	0	MSKCC	GRCh37	12	133257810	133257810	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	70	504	0	ENST00000320574.5:c.118T>A	p.Trp40Arg	p.W40R	ENST00000320574	NM_006231.2	40	Tgg/Agg																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041478	14041478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	107	321	0	ENST00000311895.7:c.2025G>T	p.Gln675His	p.Q675H	ENST00000311895	NM_005236.2	675	caG/caT																																																																														
NF1	0	MSKCC	GRCh37	17	29563005	29563005	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	79	517	0	ENST00000358273.4:c.3940T>G	p.Trp1314Gly	p.W1314G	ENST00000358273	NM_001042492.2	1314	Tgg/Ggg																																																																														
RARA	0	MSKCC	GRCh37	17	38487619	38487619	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	50	552	0	ENST00000254066.5:c.149T>A	p.Val50Asp	p.V50D	ENST00000254066	NM_000964.3	50	gTt/gAt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2211110	2211110	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	60	570	0	ENST00000398665.3:c.1367del	p.Pro456LeufsTer33	p.P456Lfs*33	ENST00000398665	NM_032482.2	455	tCc/tc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244163	5244163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	43	443	1	ENST00000357368.4:c.1319C>T	p.Ala440Val	p.A440V	ENST00000357368	NM_002850.3	440	gCg/gTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10250352	10250352	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	23	266	0	ENST00000340748.4:c.3900G>T	p.Gln1300His	p.Q1300H	ENST00000340748		1300	caG/caT																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214870	36214870	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200663900		P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	77	644	2	ENST00000222270.7:c.3296G>C	p.Gly1099Ala	p.G1099A	ENST00000222270	NM_014727.1	1099	gGc/gCc																																																																														
CIC	0	MSKCC	GRCh37	19	42794869	42794869	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	108	371	0	ENST00000575354.2:c.1953delC	p.Ala652ProfsTer76	p.A652Pfs*76	ENST00000575354	NM_015125.3	650	gCc/gc																																																																														
CIC	0	MSKCC	GRCh37	19	42798172	42798172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	62	551	0	ENST00000575354.2:c.4126C>A	p.Leu1376Met	p.L1376M	ENST00000575354	NM_015125.3	1376	Ctg/Atg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212522479	212522479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	73	401	0	ENST00000342788.4:c.1946G>T	p.Arg649Ile	p.R649I	ENST00000342788	NM_005235.2	649	aGa/aTa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52610572	52610573	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	96	460	0	ENST00000394830.3:c.3600dup	p.Met1201HisfsTer23	p.M1201Hfs*23	ENST00000394830	NM_018313.4	1200	-/C																																																																														
PBRM1	0	MSKCC	GRCh37	3	52677263	52677263	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	73	486	2	ENST00000394830.3:c.995+1G>A		p.X332_splice	ENST00000394830	NM_018313.4	332																																																																															
BCL6	0	MSKCC	GRCh37	3	187444666	187444666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	169	295	0	ENST00000232014.4:c.1561A>G	p.Asn521Asp	p.N521D	ENST00000232014	NM_001130845.1	521	Aat/Gat																																																																														
PLK2	0	MSKCC	GRCh37	5	57753180	57753180	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	87	261	0	ENST00000274289.3:c.836del	p.Pro279HisfsTer14	p.P279Hfs*14	ENST00000274289	NM_006622.3	279	cCa/ca																																																																														
MSH3	0	MSKCC	GRCh37	5	80074634	80074634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	59	432	0	ENST00000265081.6:c.2414C>A	p.Ala805Asp	p.A805D	ENST00000265081	NM_002439.4	805	gCt/gAt																																																																														
HLA-A	0	MSKCC	GRCh37	6	29912176	29912176	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	15	135	0	ENST00000376809.5:c.895+2T>C		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																															
RECQL4	0	MSKCC	GRCh37	8	145741415	145741415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	81	633	0	ENST00000428558.2:c.1088A>G	p.Tyr363Cys	p.Y363C	ENST00000428558	NM_004260.3	363	tAc/tGc																																																																														
TSC1	0	MSKCC	GRCh37	9	135798769	135798769	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	72	382	2	ENST00000298552.3:c.474del	p.Phe158LeufsTer9	p.F158Lfs*9	ENST00000298552	NM_001162426.1	158	ttT/tt																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	161	775	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	110	668	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CARD11	0	MSKCC	GRCh37	7	2968259	2968259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1049	204	716	2	ENST00000396946.4:c.1727G>A	p.Arg576His	p.R576H	ENST00000396946	NM_032415.4	576	cGc/cAc																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20152120	20152120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	87	678	0	ENST00000379607.5:c.210G>T	p.Trp70Cys	p.W70C	ENST00000379607	NM_001412.3	70	tgG/tgT																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149505026	149505026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	53	442	0	ENST00000261799.4:c.1789C>T	p.Arg597Trp	p.R597W	ENST00000261799	NM_002609.3	597	Cgg/Tgg																																																																														
BRD4	0	MSKCC	GRCh37	19	15366149	15366149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35824241		P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	65	625	0	ENST00000263377.2:c.2006G>A	p.Arg669His	p.R669H	ENST00000263377	NM_058243.2	669	cGc/cAc																																																																														
NF1	0	MSKCC	GRCh37	17	29483016	29483016	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	57	588	0	ENST00000358273.4:c.76G>T	p.Gly26Ter	p.G26*	ENST00000358273	NM_001042492.2	26	Gga/Tga																																																																														
POLE	0	MSKCC	GRCh37	12	133209302	133209302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	129	792	0	ENST00000320574.5:c.6084G>T	p.Arg2028Ser	p.R2028S	ENST00000320574	NM_006231.2	2028	agG/agT																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740683	58740683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	237	738	0	ENST00000305921.3:c.1588C>T	p.Pro530Ser	p.P530S	ENST00000305921	NM_003620.3	530	Cct/Tct																																																																														
EPHA3	0	MSKCC	GRCh37	3	89456461	89456461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	105	507	0	ENST00000336596.2:c.1637C>A	p.Ala546Asp	p.A546D	ENST00000336596	NM_005233.5	546	gCc/gAc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729438	41729438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	131	588	0	ENST00000242208.4:c.1091C>A	p.Ser364Tyr	p.S364Y	ENST00000242208	NM_002192.2	364	tCc/tAc																																																																														
PGR	0	MSKCC	GRCh37	11	100998186	100998186	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	63	431	0	ENST00000325455.5:c.1616C>A	p.Pro539Gln	p.P539Q	ENST00000325455	NM_001202474.3	539	cCg/cAg																																																																														
YAP1	0	MSKCC	GRCh37	11	102100563	102100563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	104	652	0	ENST00000282441.5:c.1407G>T	p.Glu469Asp	p.E469D	ENST00000282441	NM_001130145.2	469	gaG/gaT																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482591	56482591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	119	803	0	ENST00000267101.3:c.1048G>A	p.Gly350Arg	p.G350R	ENST00000267101	NM_001982.3	350	Gga/Aga																																																																														
TBX3	0	MSKCC	GRCh37	12	115120782	115120782	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	56	525	0	ENST00000257566.3:c.224G>T	p.Gly75Val	p.G75V	ENST00000257566	NM_016569.3	75	gGc/gTc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103518630	103518630	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	93	368	0	ENST00000355739.4:c.2218G>C	p.Glu740Gln	p.E740Q	ENST00000355739	NM_000123.3	740	Gag/Cag																																																																														
AXIN1	0	MSKCC	GRCh37	16	347734	347734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	66	630	0	ENST00000262320.3:c.1772G>T	p.Gly591Val	p.G591V	ENST00000262320	NM_003502.3	591	gGc/gTc																																																																														
RARA	0	MSKCC	GRCh37	17	38512334	38512334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	113	589	0	ENST00000254066.5:c.1245G>T	p.Glu415Asp	p.E415D	ENST00000254066	NM_000964.3	415	gaG/gaT																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182665410	182665410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	59	481	0	ENST00000292782.4:c.531G>T	p.Met177Ile	p.M177I	ENST00000292782	NM_020640.2	177	atG/atT																																																																														
PARK2	0	MSKCC	GRCh37	6	162622278	162622278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	82	457	2	ENST00000366898.1:c.419G>T	p.Arg140Ile	p.R140I	ENST00000366898	NM_004562.2	140	aGa/aTa																																																																														
HGF	0	MSKCC	GRCh37	7	81346600	81346600	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	78	487	2	ENST00000222390.5:c.1353G>T	p.Trp451Cys	p.W451C	ENST00000222390	NM_000601.4	451	tgG/tgT																																																																														
PTCH1	0	MSKCC	GRCh37	9	98242251	98242251	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0025716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	99	577	0	ENST00000331920.6:c.1067G>C	p.Ser356Thr	p.S356T	ENST00000331920	NM_000264.3	356	aGc/aCc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	241	381	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
HNF1A	0	MSKCC	GRCh37	12	121432067	121432067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	333	536	0	ENST00000257555.6:c.814C>T	p.Arg272Cys	p.R272C	ENST00000257555		272	Cgc/Tgc																																																																														
TET2	0	MSKCC	GRCh37	4	106157797	106157797	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	183	324	0	ENST00000380013.4:c.2702del	p.Asn901IlefsTer20	p.N901Ifs*20	ENST00000380013	NM_001127208.2	900	Aaa/aa																																																																														
FLT4	0	MSKCC	GRCh37	5	180057326	180057326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	352	505	0	ENST00000261937.6:c.412C>T	p.Pro138Ser	p.P138S	ENST00000261937	NM_182925.4	138	Cca/Tca																																																																														
EPAS1	0	MSKCC	GRCh37	2	46602879	46602879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	77	539	2	ENST00000263734.3:c.937C>A	p.His313Asn	p.H313N	ENST00000263734	NM_001430.4	313	Cat/Aat																																																																														
SLX4	0	MSKCC	GRCh37	16	3639513	3639513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	66	564	1	ENST00000294008.3:c.4126C>T	p.His1376Tyr	p.H1376Y	ENST00000294008	NM_032444.2	1376	Cac/Tac																																																																														
STK11	0	MSKCC	GRCh37	19	1223076	1223077	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCGTACTTGGAGGACCTGCACGGC			P-0025720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	237	542	0	ENST00000326873.7:c.1016_1040dup	p.Asp348ValfsTer20	p.D348Vfs*20	ENST00000326873	NM_000455.4	338	gtg/gtGCCGTACTTGGAGGACCTGCACGGCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	322	564	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743881	40743881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	166	709	0	ENST00000373198.4:c.3114G>T	p.Glu1038Asp	p.E1038D	ENST00000373198	NM_133170.3	1038	gaG/gaT																																																																														
TP53	0	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	180	667	3	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
DOT1L	0	MSKCC	GRCh37	19	2191101	2191101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	273	728	1	ENST00000398665.3:c.355G>T	p.Val119Leu	p.V119L	ENST00000398665	NM_032482.2	119	Gtg/Ttg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71037162	71037162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	150	462	0	ENST00000318789.4:c.1129A>G	p.Lys377Glu	p.K377E	ENST00000318789	NM_032682.5	377	Aaa/Gaa																																																																														
FLT3	0	MSKCC	GRCh37	13	28636003	28636004	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	84	657	1	ENST00000241453.7:c.368_368+1delinsTT		p.X123_splice	ENST00000241453	NM_004119.2	123																																																																															
B2M	0	MSKCC	GRCh37	15	45003794	45003794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	60	496	0	ENST00000558401.1:c.50G>T	p.Gly17Val	p.G17V	ENST00000558401	NM_004048.2	17	gGc/gTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561324	9561324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	58	435	1	ENST00000353224.5:c.458G>T	p.Gly153Val	p.G153V	ENST00000353224	NM_177990.2	153	gGa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	135	675	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CCND2	0	MSKCC	GRCh37	12	4409152	4409152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	60	615	0	ENST00000261254.3:c.847G>T	p.Asp283Tyr	p.D283Y	ENST00000261254	NM_001759.3	283	Gac/Tac																																																																														
RBM10	0	MSKCC	GRCh37	X	47045172	47045172	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	91	796	0	ENST00000329236.7:c.2179G>T	p.Glu727Ter	p.E727*	ENST00000329236	NM_001204466.1	727	Gag/Tag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89456470	89456470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	55	535	2	ENST00000336596.2:c.1646C>A	p.Ala549Glu	p.A549E	ENST00000336596	NM_005233.5	549	gCg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	63	571	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	115	482	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CARM1	0	MSKCC	GRCh37	19	11019828	11019828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	91	449	1	ENST00000327064.4:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000327064	NM_199141.1	168	cGg/cAg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	88	590	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024102	31024102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	66	569	0	ENST00000375687.4:c.3587C>T	p.Ala1196Val	p.A1196V	ENST00000375687	NM_015338.5	1196	gCt/gTt																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165806	118165806	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	96	486	0	ENST00000369448.3:c.316C>T	p.Gln106Ter	p.Q106*	ENST00000369448	NM_017709.3	106	Cag/Tag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831980	72831980	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	148	547	0	ENST00000268489.5:c.4601C>G	p.Thr1534Ser	p.T1534S	ENST00000268489	NM_006885.3	1534	aCt/aGt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845890	72845890	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			949	263	540	1	ENST00000268489.5:c.3577T>A	p.Ser1193Thr	p.S1193T	ENST00000268489	NM_006885.3	1193	Tcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	404	592	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7579437	7579437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	146	577	1	ENST00000269305.4:c.250G>A	p.Ala84Thr	p.A84T	ENST00000269305	NM_001126112.2	84	Gcc/Acc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16042450	16042450	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	139	554	0	ENST00000268712.3:c.1224T>A	p.Phe408Leu	p.F408L	ENST00000268712	NM_006311.3	408	ttT/ttA																																																																														
POLD1	0	MSKCC	GRCh37	19	50918795	50918795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1326	151	565	1	ENST00000440232.2:c.2665C>T	p.Arg889Cys	p.R889C	ENST00000440232	NM_002691.3	889	Cgc/Tgc																																																																														
MST1R	0	MSKCC	GRCh37	3	49936030	49936030	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	157	586	0	ENST00000296474.3:c.1640G>C	p.Trp547Ser	p.W547S	ENST00000296474	NM_002447.2	547	tGg/tCg																																																																														
MST1R	0	MSKCC	GRCh37	3	49936367	49936367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	162	588	1	ENST00000296474.3:c.1481G>T	p.Ser494Ile	p.S494I	ENST00000296474	NM_002447.2	494	aGt/aTt																																																																														
MST1R	0	MSKCC	GRCh37	3	49940933	49940933	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	166	532	0	ENST00000296474.3:c.110C>G	p.Ser37Cys	p.S37C	ENST00000296474	NM_002447.2	37	tCt/tGt																																																																														
KDR	0	MSKCC	GRCh37	4	55981132	55981132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	132	551	0	ENST00000263923.4:c.567C>A	p.Ser189Arg	p.S189R	ENST00000263923	NM_002253.2	189	agC/agA																																																																														
DROSHA	0	MSKCC	GRCh37	5	31449513	31449513	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	92	313	0	ENST00000344624.3:c.2696A>C	p.His899Pro	p.H899P	ENST00000344624		899	cAt/cCt																																																																														
APC	0	MSKCC	GRCh37	5	112137040	112137040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	142	574	0	ENST00000257430.4:c.794G>C	p.Gly265Ala	p.G265A	ENST00000257430	NM_000038.5	265	gGa/gCa																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	159	576	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874689	151874689	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	209	438	0	ENST00000262189.6:c.7849A>G	p.Asn2617Asp	p.N2617D	ENST00000262189	NM_170606.2	2617	Aat/Gat																																																																														
PRDM14	0	MSKCC	GRCh37	8	70980483	70980483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1484	158	636	1	ENST00000276594.2:c.894C>A	p.Asp298Glu	p.D298E	ENST00000276594	NM_024504.3	298	gaC/gaA																																																																														
AGO2	0	MSKCC	GRCh37	8	141551357	141551357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1552	150	629	1	ENST00000220592.5:c.1940G>A	p.Arg647His	p.R647H	ENST00000220592	NM_012154.3	647	cGc/cAc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891228	101891228	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	125	440	0	ENST00000374994.4:c.189C>G	p.Asp63Glu	p.D63E	ENST00000374994	NM_004612.2	63	gaC/gaG																																																																														
SETD2	0	MSKCC	GRCh37	3	47163671	47163680	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTCATAAC	TCTTCATAAC	-			P-0025787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	66	399	0	ENST00000409792.3:c.2446_2455del	p.Val816PhefsTer7	p.V816Ffs*7	ENST00000409792	NM_014159.6	816	GTTATGAAGAtt/tt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52651307	52651307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	50	481	0	ENST00000394830.3:c.1789G>T	p.Ala597Ser	p.A597S	ENST00000394830	NM_018313.4	597	Gcc/Tcc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	152	396	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	115	144	1	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55																																																																															
SMARCA4	6597	MSKCC	GRCh37	19	11144152	11144152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	232	493	0	ENST00000344626.4:c.3733G>A	p.Ala1245Thr	p.A1245T	ENST00000344626	NM_003072.3	1245	Gcc/Acc																																																																														
EP300	0	MSKCC	GRCh37	22	41562652	41562653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0025793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	255	328	1	ENST00000263253.7:c.3858_3859dup	p.Lys1287IlefsTer17	p.K1287Ifs*17	ENST00000263253	NM_001429.3	1286	aat/aATat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0021405-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			460	128	507	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431855	49431855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021405-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	136	553	2	ENST00000301067.7:c.9284G>A	p.Gly3095Asp	p.G3095D	ENST00000301067	NM_003482.3	3095	gGc/gAc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66535316	66535316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021405-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			252	82	477	0	ENST00000273854.3:c.145G>A	p.Ala49Thr	p.A49T	ENST00000273854	NM_004439.5	49	Gca/Aca																																																																														
PTP4A1	0	MSKCC	GRCh37	6	64288369	64288369	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021405-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	102	475	0	ENST00000370651.3:c.133A>G	p.Ile45Val	p.I45V	ENST00000370651	NM_003463.4	45	Ata/Gta																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	187	364	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
DDR2	0	MSKCC	GRCh37	1	162731235	162731235	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	96	242	0	ENST00000367921.3:c.1090T>A	p.Phe364Ile	p.F364I	ENST00000367921	NM_006182.2	364	Ttc/Atc																																																																														
STAT3	0	MSKCC	GRCh37	17	40475342	40475344	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0025753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	297	402	0	ENST00000264657.5:c.1682_1684del	p.Phe561del	p.F561del	ENST00000264657	NM_139276.2	561	tTCTgg/tgg																																																																														
IRF4	0	MSKCC	GRCh37	6	401552	401552	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	109	397	0	ENST00000380956.4:c.874T>C	p.Phe292Leu	p.F292L	ENST00000380956	NM_001195286.1	292	Ttc/Ctc																																																																														
MED12	0	MSKCC	GRCh37	X	70355092	70355092	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	267	451	0	ENST00000374080.3:c.5014T>G	p.Phe1672Val	p.F1672V	ENST00000374080		1672	Ttc/Gtc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	150	444	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	199	633	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0025761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	454	587	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	39	580	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MAX	0	MSKCC	GRCh37	14	65544642	65544642	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	40	486	0	ENST00000358664.4:c.284T>C	p.Leu95Pro	p.L95P	ENST00000358664	NM_002382.4	95	cTg/cCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	194	388	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020938-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	85	602	1	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																														
DAXX	0	MSKCC	GRCh37	6	33288975	33288975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			113	313	348	0	ENST00000374542.5:c.577C>T	p.Gln193Ter	p.Q193*	ENST00000374542	NM_001141970.1	193	Cag/Tag																																																																														
MEN1	0	MSKCC	GRCh37	11	64575021	64575035	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACCTGCTGCAGCTG	CACCTGCTGCAGCTG	-			P-0004307-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			93	282	310	0	ENST00000337652.1:c.787_798+3del		p.X263_splice	ENST00000337652	NM_130803.2	263																																																																															
MTOR	0	MSKCC	GRCh37	1	11272421	11272421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			315	94	182	0	ENST00000361445.4:c.3509G>A	p.Arg1170His	p.R1170H	ENST00000361445	NM_004958.3	1170	cGc/cAc																																																																														
SPEN	0	MSKCC	GRCh37	1	16245516	16245517	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			365	59	217	0	ENST00000375759.3:c.1495dup	p.Glu499GlyfsTer6	p.E499Gfs*6	ENST00000375759	NM_015001.2	497	-/G																																																																														
SPEN	0	MSKCC	GRCh37	1	16248844	16248844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			290	72	156	0	ENST00000375759.3:c.1850G>A	p.Arg617Lys	p.R617K	ENST00000375759	NM_015001.2	617	aGa/aAa																																																																														
SPEN	0	MSKCC	GRCh37	1	16264466	16264466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			304	93	155	2	ENST00000375759.3:c.10669G>A	p.Ala3557Thr	p.A3557T	ENST00000375759	NM_015001.2	3557	Gca/Aca																																																																														
NTRK1	0	MSKCC	GRCh37	1	156846331	156846331	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			236	78	120	0	ENST00000524377.1:c.1772A>T	p.Tyr591Phe	p.Y591F	ENST00000524377	NM_002529.3	591	tAt/tTt																																																																														
DDR2	0	MSKCC	GRCh37	1	162746063	162746063	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			283	66	178	0	ENST00000367921.3:c.2186T>G	p.Phe729Cys	p.F729C	ENST00000367921	NM_006182.2	729	tTt/tGt																																																																														
CDC73	0	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			304	72	176	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																														
AKT3	0	MSKCC	GRCh37	1	243801041	243801041	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			287	69	189	0	ENST00000263826.5:c.433A>G	p.Met145Val	p.M145V	ENST00000263826	NM_005465.4	145	Atg/Gtg																																																																														
FGF19	0	MSKCC	GRCh37	11	69518493	69518493	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			89	31	45	0	ENST00000294312.3:c.152G>C	p.Gly51Ala	p.G51A	ENST00000294312	NM_005117.2	51	gGc/gCc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942232	71942232	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			213	52	121	0	ENST00000298229.2:c.1496C>T	p.Pro499Leu	p.P499L	ENST00000298229	NM_001567.3	499	cCg/cTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71943705	71943705	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			365	101	198	0	ENST00000298229.2:c.1748T>G	p.Leu583Arg	p.L583R	ENST00000298229	NM_001567.3	583	cTc/cGc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18719951	18719951	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	77	261	0	ENST00000266497.5:c.3848A>G	p.Tyr1283Cys	p.Y1283C	ENST00000266497		1283	tAc/tGc																																																																														
RECQL	0	MSKCC	GRCh37	12	21644545	21644545	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			359	75	244	0	ENST00000421138.2:c.122T>C	p.Val41Ala	p.V41A	ENST00000421138		41	gTc/gCc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421097	49421097	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			171	57	75	0	ENST00000301067.7:c.14652del	p.Ala4885ProfsTer110	p.A4885Pfs*110	ENST00000301067	NM_003482.3	4884	ccC/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			247	97	139	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436396	49436396	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			285	78	162	0	ENST00000301067.7:c.5815A>G	p.Ser1939Gly	p.S1939G	ENST00000301067	NM_003482.3	1939	Agc/Ggc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49441773	49441773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			272	70	143	0	ENST00000301067.7:c.4211A>G	p.Tyr1404Cys	p.Y1404C	ENST00000301067	NM_003482.3	1404	tAt/tGt																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563349	21563349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			321	85	187	0	ENST00000382592.4:c.570del	p.Tyr191ThrfsTer49	p.Y191Tfs*49	ENST00000382592	NM_014572.2	190	ccC/cc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906501	32906501	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			280	75	174	0	ENST00000380152.3:c.886T>C	p.Tyr296His	p.Y296H	ENST00000380152		296	Tat/Cat																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			341	98	205	1	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988426	36988426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			78	42	41	0	ENST00000354822.5:c.227C>T	p.Ala76Val	p.A76V	ENST00000354822	NM_001079668.2	76	gCg/gTg																																																																														
TSC2	0	MSKCC	GRCh37	16	2103385	2103385	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			292	87	140	0	ENST00000219476.3:c.268C>T	p.Gln90Ter	p.Q90*	ENST00000219476	NM_000548.3	90	Cag/Tag																																																																														
SLX4	0	MSKCC	GRCh37	16	3639636	3639636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			394	51	166	0	ENST00000294008.3:c.4003G>A	p.Gly1335Ser	p.G1335S	ENST00000294008	NM_032444.2	1335	Ggc/Agc																																																																														
SLX4	0	MSKCC	GRCh37	16	3656513	3656513	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			449	117	249	0	ENST00000294008.3:c.722T>A	p.Val241Asp	p.V241D	ENST00000294008	NM_032444.2	241	gTc/gAc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778277	3778277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			271	25	144	0	ENST00000262367.5:c.6771G>T	p.Gln2257His	p.Q2257H	ENST00000262367	NM_004380.2	2257	caG/caT																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830806	72830807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			321	74	174	0	ENST00000268489.5:c.5774dupG	p.Gly1926TrpfsTer3	p.G1926Wfs*3	ENST00000268489	NM_006885.3	1925	ggt/ggGt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944250	81944250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147396004		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			295	74	159	0	ENST00000359376.3:c.1859C>T	p.Thr620Met	p.T620M	ENST00000359376	NM_002661.3	620	aCg/aTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			517	99	233	1	ENST00000301030.4:c.4382_4384delAGA	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56439919	56439919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			349	98	195	0	ENST00000407977.2:c.673del	p.Arg225AlafsTer194	p.R225Afs*194	ENST00000407977		225	Cgc/gc																																																																														
RNF43	0	MSKCC	GRCh37	17	56448325	56448325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			300	90	182	0	ENST00000407977.2:c.322A>G	p.Lys108Glu	p.K108E	ENST00000407977		108	Aag/Gag																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732986	74732986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			118	38	47	0	ENST00000359995.5:c.257G>T	p.Arg86Leu	p.R86L	ENST00000359995	NM_001195427.1	86	cGg/cTg																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4090613	4090613	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			214	63	110	0	ENST00000262948.5:c.1186A>G	p.Thr396Ala	p.T396A	ENST00000262948	NM_030662.3	396	Acg/Gcg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602918	10602918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			337	81	156	0	ENST00000171111.5:c.660C>A	p.Phe220Leu	p.F220L	ENST00000171111	NM_203500.1	220	ttC/ttA																																																																														
CARM1	0	MSKCC	GRCh37	19	11030586	11030586	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			308	83	183	0	ENST00000327064.4:c.1140T>A	p.His380Gln	p.H380Q	ENST00000327064	NM_199141.1	380	caT/caA																																																																														
CARM1	0	MSKCC	GRCh37	19	11030613	11030613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			290	71	158	0	ENST00000327064.4:c.1167C>A	p.Phe389Leu	p.F389L	ENST00000327064	NM_199141.1	389	ttC/ttA																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11096048	11096048	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			250	82	147	2	ENST00000344626.4:c.326del	p.Pro109ArgfsTer194	p.P109Rfs*194	ENST00000344626	NM_003072.3	108	Ccc/cc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097083	11097084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			258	71	128	0	ENST00000344626.4:c.579dup	p.Gln194AlafsTer93	p.Q194Afs*93	ENST00000344626	NM_003072.3	192	agg/aGgg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15285059	15285059	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			237	43	115	0	ENST00000263388.2:c.4556T>C	p.Leu1519Pro	p.L1519P	ENST00000263388	NM_000435.2	1519	cTg/cCg																																																																														
BRD4	0	MSKCC	GRCh37	19	15354260	15354260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			255	76	140	0	ENST00000263377.2:c.2620A>G	p.Ser874Gly	p.S874G	ENST00000263377	NM_058243.2	874	Agc/Ggc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216153	36216153	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			303	88	137	0	ENST00000222270.7:c.3566del	p.Gly1189AlafsTer2	p.G1189Afs*2	ENST00000222270	NM_014727.1	1187	atG/at																																																																														
AKT2	0	MSKCC	GRCh37	19	40741201	40741201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			263	33	155	0	ENST00000392038.2:c.1232G>A	p.Ser411Asn	p.S411N	ENST00000392038	NM_001626.4	411	aGc/aAc																																																																														
ERF	0	MSKCC	GRCh37	19	42752768	42752768	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			292	61	120	0	ENST00000222329.4:c.1496delG	p.Gly499AlafsTer32	p.G499Afs*32	ENST00000222329	NM_006494.2	499	gGc/gc																																																																														
CIC	0	MSKCC	GRCh37	19	42791190	42791190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			258	57	124	0	ENST00000575354.2:c.250C>T	p.Arg84Trp	p.R84W	ENST00000575354	NM_015125.3	84	Cgg/Tgg																																																																														
POLD1	0	MSKCC	GRCh37	19	50916729	50916729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			301	74	136	0	ENST00000440232.2:c.2201T>C	p.Leu734Pro	p.L734P	ENST00000440232	NM_002691.3	734	cTg/cCg																																																																														
POLD1	0	MSKCC	GRCh37	19	50919036	50919036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			291	96	108	1	ENST00000440232.2:c.2773G>A	p.Val925Met	p.V925M	ENST00000440232	NM_002691.3	925	Gtg/Atg																																																																														
CASP8	0	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			304	70	173	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022470	31022470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			140	10	64	0	ENST00000375687.4:c.1955G>A	p.Gly652Asp	p.G652D	ENST00000375687	NM_015338.5	652	gGc/gAc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46279885	46279887	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			306	30	149	0	ENST00000371998.3:c.3816_3818del	p.Gln1276del	p.Q1276del	ENST00000371998		1271	CAG/-																																																																														
EP300	0	MSKCC	GRCh37	22	41574890	41574890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			405	113	230	0	ENST00000263253.7:c.7175A>G	p.Asp2392Gly	p.D2392G	ENST00000263253	NM_001429.3	2392	gAc/gGc																																																																														
MST1	0	MSKCC	GRCh37	3	49723623	49723623	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			76	12	40	0	ENST00000449682.2:c.1019A>G	p.Asp340Gly	p.D340G	ENST00000449682	NM_020998.3	340	gAc/gGc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52588830	52588830	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			236	52	140	0	ENST00000394830.3:c.4198A>G	p.Met1400Val	p.M1400V	ENST00000394830	NM_018313.4	1400	Atg/Gtg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480481	89480481	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			251	41	182	0	ENST00000336596.2:c.2318A>G	p.Asp773Gly	p.D773G	ENST00000336596	NM_005233.5	773	gAt/gGt																																																																														
ATR	0	MSKCC	GRCh37	3	142281404	142281404	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			323	97	232	0	ENST00000350721.4:c.840del	p.Val281Ter	p.V281*	ENST00000350721	NM_001184.3	280	ctT/ct																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186504339	186504339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			224	31	122	0	ENST00000323963.5:c.681del	p.Lys227AsnfsTer3	p.K227Nfs*3	ENST00000323963		226	Aaa/aa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808898	1808898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			244	61	110	0	ENST00000260795.2:c.2334delC	p.Ser779AlafsTer41	p.S779Afs*41	ENST00000260795		777	aCc/ac																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808915	1808915	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			247	74	111	0	ENST00000260795.2:c.2347T>G	p.Ser783Ala	p.S783A	ENST00000260795		783	Tca/Gca																																																																														
WHSC1	0	MSKCC	GRCh37	4	1955175	1955175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			308	101	212	0	ENST00000382891.5:c.2262C>A	p.Ser754Arg	p.S754R	ENST00000382891	NM_133335.3	754	agC/agA																																																																														
KIT	0	MSKCC	GRCh37	4	55604695	55604695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			293	80	166	0	ENST00000288135.5:c.2903A>G	p.Gln968Arg	p.Q968R	ENST00000288135	NM_000222.2	968	cAg/cGg																																																																														
TET2	0	MSKCC	GRCh37	4	106156238	106156238	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			236	70	136	0	ENST00000380013.4:c.1139A>G	p.Tyr380Cys	p.Y380C	ENST00000380013	NM_001127208.2	380	tAc/tGc																																																																														
FAT1	0	MSKCC	GRCh37	4	187517795	187517795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			187	60	95	0	ENST00000441802.2:c.12899C>T	p.Ala4300Val	p.A4300V	ENST00000441802	NM_005245.3	4300	gCg/gTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187521225	187521225	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			344	89	161	0	ENST00000441802.2:c.11930T>C	p.Met3977Thr	p.M3977T	ENST00000441802	NM_005245.3	3977	aTg/aCg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31472274	31472274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			380	124	265	0	ENST00000344624.3:c.2137C>A	p.Leu713Met	p.L713M	ENST00000344624		713	Ctg/Atg																																																																														
IL7R	0	MSKCC	GRCh37	5	35873603	35873603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			170	49	133	0	ENST00000303115.3:c.559A>G	p.Lys187Glu	p.K187E	ENST00000303115	NM_002185.3	187	Aag/Gag																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			350	194	245	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	0	MSKCC	GRCh37	5	112178774	112178774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			364	31	168	0	ENST00000257430.4:c.7483A>G	p.Thr2495Ala	p.T2495A	ENST00000257430	NM_000038.5	2495	Aca/Gca																																																																														
IRF4	0	MSKCC	GRCh37	6	394942	394942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			264	84	182	0	ENST00000380956.4:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000380956	NM_001195286.1	113	cGg/cAg																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031928	26031928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			203	55	143	0	ENST00000244661.2:c.361A>G	p.Met121Val	p.M121V	ENST00000244661	NM_003537.3	121	Atg/Gtg																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			174	37	75	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324735	31324735	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			77	15	36	0	ENST00000412585.2:c.74-1G>T		p.X25_splice	ENST00000412585	NM_005514.6	25																																																																															
STK19	0	MSKCC	GRCh37	6	31947216	31947216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			275	95	147	0	ENST00000375331.2:c.689C>T	p.Pro230Leu	p.P230L	ENST00000375331	NM_004197.1	230	cCg/cTg																																																																														
ESR1	0	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			149	44	71	0	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																														
ARID1B	0	MSKCC	GRCh37	6	157469764	157469764	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			379	92	209	0	ENST00000346085.5:c.2558A>G	p.Tyr853Cys	p.Y853C	ENST00000346085	NM_020732.3	853	tAc/tGc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467635	50467635	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			218	41	97	0	ENST00000331340.3:c.870C>G	p.Asp290Glu	p.D290E	ENST00000331340	NM_006060.4	290	gaC/gaG																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878556	151878556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			334	87	176	0	ENST00000262189.6:c.6389C>T	p.Pro2130Leu	p.P2130L	ENST00000262189	NM_170606.2	2130	cCa/cTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151882679	151882679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			241	59	165	0	ENST00000262189.6:c.5046G>T	p.Trp1682Cys	p.W1682C	ENST00000262189	NM_170606.2	1682	tgG/tgT																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945664	151945664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			424	107	288	0	ENST00000262189.6:c.1855A>G	p.Ile619Val	p.I619V	ENST00000262189	NM_170606.2	619	Att/Gtt																																																																														
PREX2	0	MSKCC	GRCh37	8	69021665	69021665	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			312	75	167	0	ENST00000288368.4:c.2953A>G	p.Met985Val	p.M985V	ENST00000288368	NM_024870.2	985	Atg/Gtg																																																																														
NBN	0	MSKCC	GRCh37	8	90993674	90993674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			313	71	184	0	ENST00000265433.3:c.249G>A	p.Met83Ile	p.M83I	ENST00000265433	NM_002485.4	83	atG/atA																																																																														
TEK	0	MSKCC	GRCh37	9	27206633	27206633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			345	62	127	1	ENST00000380036.4:c.2418G>T	p.Lys806Asn	p.K806N	ENST00000380036	NM_000459.3	806	aaG/aaT																																																																														
NTRK2	0	MSKCC	GRCh37	9	87338509	87338509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			287	67	169	0	ENST00000277120.3:c.605C>A	p.Ala202Asp	p.A202D	ENST00000277120		202	gCc/gAc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98220567	98220567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			222	57	137	0	ENST00000331920.6:c.2896G>A	p.Ala966Thr	p.A966T	ENST00000331920	NM_000264.3	966	Gca/Aca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401035	139401035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			308	114	148	0	ENST00000277541.6:c.3958G>A	p.Gly1320Ser	p.G1320S	ENST00000277541	NM_017617.3	1320	Ggc/Agc																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15833883	15833883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			36	14	34	0	ENST00000307771.7:c.641G>A	p.Cys214Tyr	p.C214Y	ENST00000307771	NM_005089.3	214	tGc/tAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39933233	39933233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			200	47	127	0	ENST00000378444.4:c.1366G>A	p.Asp456Asn	p.D456N	ENST00000378444	NM_001123385.1	456	Gac/Aac																																																																														
KDM5C	0	MSKCC	GRCh37	X	53239687	53239687	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			98	82	100	0	ENST00000375401.3:c.1655T>C	p.Leu552Pro	p.L552P	ENST00000375401	NM_004187.3	552	cTg/cCg																																																																														
AR	0	MSKCC	GRCh37	X	66766562	66766562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			107	26	65	0	ENST00000374690.3:c.1574G>C	p.Gly525Ala	p.G525A	ENST00000374690	NM_000044.3	525	gGc/gCc																																																																														
MED12	0	MSKCC	GRCh37	X	70357657	70357657	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			123	89	107	0	ENST00000374080.3:c.5908A>T	p.Ser1970Cys	p.S1970C	ENST00000374080		1970	Agc/Tgc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324886	31324887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008504-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			77	32	36	0	ENST00000412585.2:c.49_50insG	p.Leu17ArgfsTer82	p.L17Rfs*82	ENST00000412585	NM_005514.6	17	ctg/cGtg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	37	550	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0013618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	120	579	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578499	7578529	+	frameshift_variant	Frame_Shift_Del	DEL	TGCACAGGGCAGGTCTTGGCCAGTTGGCAAA	TGCACAGGGCAGGTCTTGGCCAGTTGGCAAA	-			P-0013618-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1453	186	813	1	ENST00000269305.4:c.401_431del	p.Phe134CysfsTer26	p.F134Cfs*26	ENST00000269305	NM_001126112.2	134	tTTTGCCAACTGGCCAAGACCTGCCCTGTGCAg/tg																																																																														
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	323	777	0	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831354	72831354	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025077-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			260	190	328	0	ENST00000268489.5:c.5227C>T	p.Gln1743Ter	p.Q1743*	ENST00000268489	NM_006885.3	1743	Caa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	279	364	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	52	639	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
TP53	0	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	362	752	2	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123353331	123353331	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0025462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	148	697	1	ENST00000358487.5:c.1A>G	p.Met1?	p.M1?	ENST00000358487	NM_000141.4	1	Atg/Gtg																																																																														
MEN1	0	MSKCC	GRCh37	11	64577329	64577329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	374	581	1	ENST00000337652.1:c.253A>G	p.Ile85Val	p.I85V	ENST00000337652	NM_130803.2	85	Atc/Gtc																																																																														
PDPK1	0	MSKCC	GRCh37	16	2647148	2647148	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	214	436	1	ENST00000342085.4:c.1426C>G	p.Leu476Val	p.L476V	ENST00000342085	NM_002613.4	476	Ctg/Gtg																																																																														
FAT1	0	MSKCC	GRCh37	4	187538173	187538173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	42	590	1	ENST00000441802.2:c.9061C>T	p.Pro3021Ser	p.P3021S	ENST00000441802	NM_005245.3	3021	Cca/Tca																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106526667	106526667	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	185	502	0	ENST00000359195.3:c.2960T>G	p.Leu987Arg	p.L987R	ENST00000359195	NM_002649.2	987	cTa/cGa																																																																														
SESN3	0	MSKCC	GRCh37	11	94963988	94963988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	61	444	0	ENST00000536441.1:c.37A>G	p.Asn13Asp	p.N13D	ENST00000536441	NM_144665.3	13	Aac/Gac																																																																														
SESN3	0	MSKCC	GRCh37	11	94963988	94964002	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCGGCGGCCGACG	TGGCGGCGGCCGACG	C			P-0025462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	158	444	0	ENST00000536441.1:c.23_37delinsG	p.Pro8ArgfsTer16	p.P8Rfs*16	ENST00000536441	NM_144665.3	8	cCGTCGGCCGCCGCCAac/cGac																																																																														
AXIN1	0	MSKCC	GRCh37	16	348214	348214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	52	708	0	ENST00000262320.3:c.1292C>T	p.Pro431Leu	p.P431L	ENST00000262320	NM_003502.3	431	cCc/cTc																																																																														
FGF4	0	MSKCC	GRCh37	11	69589519	69589519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	17	165	0	ENST00000168712.1:c.334C>G	p.Arg112Gly	p.R112G	ENST00000168712	NM_002007.2	112	Cgc/Ggc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450300	50450300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	380	554	3	ENST00000331340.3:c.484C>T	p.Arg162Trp	p.R162W	ENST00000331340	NM_006060.4	162	Cgg/Tgg																																																																														
CTCF	0	MSKCC	GRCh37	16	67655425	67655426	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0025527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	180	740	0	ENST00000264010.4:c.1292_1293del	p.Thr431ArgfsTer12	p.T431Rfs*12	ENST00000264010	NM_006565.3	430	CAc/c																																																																														
SHQ1	0	MSKCC	GRCh37	3	72861900	72861901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTTCTT			P-0025527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	438	649	2	ENST00000325599.8:c.975_981dup	p.Val328LysfsTer30	p.V328Kfs*30	ENST00000325599	NM_018130.2	327	-/AAGAAGG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	363	485	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	348	638	0	ENST00000263967.3:c.1638G>C	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caC																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	120	451	0	ENST00000250448.2:c.781C>A	p.Arg261Ser	p.R261S	ENST00000250448	NM_004496.3	261	Cgc/Agc																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49280981	49280981	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201474852		P-0025528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	192	655	0	ENST00000282018.3:c.28C>A	p.Pro10Thr	p.P10T	ENST00000282018	NM_020377.2	10	Cca/Aca																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267383	198267383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	145	610	3	ENST00000335508.6:c.1974G>T	p.Trp658Cys	p.W658C	ENST00000335508	NM_012433.2	658	tgG/tgT																																																																														
PMS2	0	MSKCC	GRCh37	7	6038902	6038902	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	131	472	0	ENST00000265849.7:c.542A>T	p.Tyr181Phe	p.Y181F	ENST00000265849	NM_000535.5	181	tAt/tTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	19	402	1	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482606	56482606	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	41	453	0	ENST00000267101.3:c.1063A>C	p.Thr355Pro	p.T355P	ENST00000267101	NM_001982.3	355	Acc/Ccc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	67	252	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	225	694	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
RB1	0	MSKCC	GRCh37	13	48954211	48954242	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAATTTTAGGTAAATTTTTTACTTTTAGTAA	AAAATTTTAGGTAAATTTTTTACTTTTAGTAA	-			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	75	428	0	ENST00000267163.4:c.1420_1421+30del		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
SPEN	0	MSKCC	GRCh37	1	16261727	16261727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	203	546	0	ENST00000375759.3:c.8992G>A	p.Val2998Ile	p.V2998I	ENST00000375759	NM_015001.2	2998	Gtc/Atc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123325161	123325161	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	229	505	0	ENST00000358487.5:c.167A>T	p.Glu56Val	p.E56V	ENST00000358487	NM_000141.4	56	gAg/gTg																																																																														
POLE	0	MSKCC	GRCh37	12	133235929	133235930	+	missense_variant	Missense_Mutation	DNP	CA	CA	AC			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	181	525	2	ENST00000320574.5:c.3226_3227delinsGT	p.Cys1076Val	p.C1076V	ENST00000320574	NM_006231.2	1076	TGc/GTc																																																																														
DICER1	0	MSKCC	GRCh37	14	95574406	95574407	+	missense_variant	Missense_Mutation	DNP	GT	GT	AG			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	79	293	1	ENST00000343455.3:c.2460_2461delinsCT	p.Arg821Cys	p.R821C	ENST00000343455	NM_177438.2	820	acACgc/acCTgc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245756	41245756	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	192	685	0	ENST00000357654.3:c.1792T>A	p.Leu598Ile	p.L598I	ENST00000357654	NM_007294.3	598	Tta/Ata																																																																														
STK11	0	MSKCC	GRCh37	19	1221210	1221210	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	203	646	0	ENST00000326873.7:c.735-2A>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																																																															
PPP2R1A	0	MSKCC	GRCh37	19	52716009	52716009	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	444	541	0	ENST00000322088.6:c.574T>C	p.Phe192Leu	p.F192L	ENST00000322088	NM_014225.5	192	Ttt/Ctt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727072	40727072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	157	501	0	ENST00000373198.4:c.3892G>A	p.Asp1298Asn	p.D1298N	ENST00000373198	NM_133170.3	1298	Gac/Aac																																																																														
FLT4	0	MSKCC	GRCh37	5	180036017	180036017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	249	641	0	ENST00000261937.6:c.3844G>A	p.Glu1282Lys	p.E1282K	ENST00000261937	NM_182925.4	1282	Gag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32187533	32187533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	255	571	1	ENST00000375023.3:c.1346G>A	p.Gly449Asp	p.G449D	ENST00000375023	NM_004557.3	449	gGc/gAc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146928	38146928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	184	752	0	ENST00000317025.8:c.3214C>T	p.Pro1072Ser	p.P1072S	ENST00000317025	NM_023034.1	1072	Ccc/Tcc																																																																														
STAG2	0	MSKCC	GRCh37	X	123199774	123199775	+	missense_variant	Missense_Mutation	DNP	AA	AA	GG			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	91	535	0	ENST00000218089.9:c.2074_2075delinsGG	p.Lys692Gly	p.K692G	ENST00000218089	NM_001042749.1	692	AAg/GGg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092831	27092833	+	frameshift_variant	Frame_Shift_Del	DEL	GTG	GTG	T			P-0025530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	236	626	0	ENST00000324856.7:c.2852_2854delinsT	p.Gly951ValfsTer55	p.G951Vfs*55	ENST00000324856	NM_006015.4	951	gGTGga/gTga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0025534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	122	417	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0025534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	126	496	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581272	48581273	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	327	525	0	ENST00000342988.3:c.579_580del	p.Glu193AspfsTer12	p.E193Dfs*12	ENST00000342988	NM_005359.5	192	acAGag/acag																																																																														
IRS2	0	MSKCC	GRCh37	13	110438298	110438298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	52	159	0	ENST00000375856.3:c.103G>A	p.Gly35Ser	p.G35S	ENST00000375856	NM_003749.2	35	Ggc/Agc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	110	603	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	27	294	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025536-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	85	494	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	421	516	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
MYCN	0	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	531	735	0	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99193507	99193507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	454	645	1	ENST00000074304.5:c.2702G>A	p.Arg901His	p.R901H	ENST00000074304	NM_001134224.1	901	cGt/cAt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	228	425	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa																																																																														
SOX17	0	MSKCC	GRCh37	8	55370985	55370985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	427	597	1	ENST00000297316.4:c.287C>G	p.Ala96Gly	p.A96G	ENST00000297316	NM_022454.3	96	gCc/gGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0025537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	151	427	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420825	49420825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1182	355	574	0	ENST00000301067.7:c.14924G>A	p.Arg4975His	p.R4975H	ENST00000301067	NM_003482.3	4975	cGt/cAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105690	27105693	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0025537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	190	375	0	ENST00000324856.7:c.5301_5304del	p.Glu1767AspfsTer2	p.E1767Dfs*2	ENST00000324856	NM_006015.4	1767	gaACTT/ga																																																																														
PTEN	0	MSKCC	GRCh37	10	89690842	89690842	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	98	412	0	ENST00000371953.3:c.249C>A	p.Cys83Ter	p.C83*	ENST00000371953	NM_000314.4	83	tgC/tgA																																																																														
INPP4A	0	MSKCC	GRCh37	2	99149905	99149906	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCACCCCT			P-0025537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	337	617	0	ENST00000074304.5:c.220_227dup	p.Gln77ProfsTer25	p.Q77Pfs*25	ENST00000074304	NM_001134224.1	73	acc/aCCACCCCTcc																																																																														
NSD1	0	MSKCC	GRCh37	5	176687148	176687155	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTGCTT	TGGTGCTT	-			P-0025537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	221	537	0	ENST00000439151.2:c.5127_5134del	p.Trp1709CysfsTer12	p.W1709Cfs*12	ENST00000439151	NM_022455.4	1709	TGGTGCTTt/t																																																																														
NSD1	0	MSKCC	GRCh37	5	176720852	176720852	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	248	562	0	ENST00000439151.2:c.6483G>A	p.Trp2161Ter	p.W2161*	ENST00000439151	NM_022455.4	2161	tgG/tgA																																																																														
SPEN	0	MSKCC	GRCh37	1	16261814	16261814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	187	485	2	ENST00000375759.3:c.9079C>T	p.Arg3027Ter	p.R3027*	ENST00000375759	NM_015001.2	3027	Cga/Tga																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462996	120462996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	130	461	0	ENST00000256646.2:c.5335G>A	p.Glu1779Lys	p.E1779K	ENST00000256646	NM_024408.3	1779	Gaa/Aaa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310863	123310872	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTTGGCAT	TGGTTGGCAT	-			P-0025590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42554	4593	437	1	ENST00000358487.5:c.556_565del	p.Met186CysfsTer4	p.M186Cfs*4	ENST00000358487	NM_000141.4	186	ATGCCAACCAtg/tg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	396	393	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																														
NSD1	0	MSKCC	GRCh37	5	176718999	176718999	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	123	309	0	ENST00000439151.2:c.6303G>C	p.Lys2101Asn	p.K2101N	ENST00000439151	NM_022455.4	2101	aaG/aaC																																																																														
ROS1	0	MSKCC	GRCh37	6	117746771	117746771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	187	466	0	ENST00000368508.3:c.49C>G	p.Leu17Val	p.L17V	ENST00000368508	NM_002944.2	17	Ctt/Gtt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508323	106508323	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	85	260	0	ENST00000359195.3:c.317G>A	p.Trp106Ter	p.W106*	ENST00000359195	NM_002649.2	106	tGg/tAg																																																																														
PAX5	0	MSKCC	GRCh37	9	36882021	36882021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	163	567	2	ENST00000358127.4:c.992C>T	p.Thr331Met	p.T331M	ENST00000358127	NM_001280556.1	331	aCg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0025632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	16	427	2	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0025632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	35	612	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	31	414	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101434	27101434	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	25	408	0	ENST00000324856.7:c.4716C>G	p.Tyr1572Ter	p.Y1572*	ENST00000324856	NM_006015.4	1572	taC/taG																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602620	10602620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	235	412	0	ENST00000171111.5:c.958C>T	p.Arg320Trp	p.R320W	ENST00000171111	NM_203500.1	320	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112173600	112173600	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	171	229	0	ENST00000257430.4:c.2309C>G	p.Ser770Ter	p.S770*	ENST00000257430	NM_000038.5	770	tCa/tGa																																																																														
POLE	0	MSKCC	GRCh37	12	133226046	133226046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	272	432	0	ENST00000320574.5:c.3851G>T	p.Arg1284Leu	p.R1284L	ENST00000320574	NM_006231.2	1284	cGg/cTg																																																																														
TSHR	0	MSKCC	GRCh37	14	81562982	81562982	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	209	346	0	ENST00000298171.2:c.546-1G>A		p.X182_splice	ENST00000298171	NM_000369.2	182																																																																															
STK11	0	MSKCC	GRCh37	19	1220612	1220612	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	185	374	2	ENST00000326873.7:c.630C>A	p.Cys210Ter	p.C210*	ENST00000326873	NM_000455.4	210	tgC/tgA																																																																														
LATS1	0	MSKCC	GRCh37	6	149982926	149982926	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	245	399	1	ENST00000253339.5:c.3332C>A	p.Ser1111Ter	p.S1111*	ENST00000253339		1111	tCg/tAg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099805	157099805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	166	205	1	ENST00000346085.5:c.742G>T	p.Ala248Ser	p.A248S	ENST00000346085	NM_020732.3	248	Gct/Tct																																																																														
RBM10	0	MSKCC	GRCh37	X	47039904	47039904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0025637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	251	235	0	ENST00000329236.7:c.1013A>G	p.Gln338Arg	p.Q338R	ENST00000329236	NM_001204466.1	338	cAg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	59	411	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	195	463	0	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	116	482	0	ENST00000171111.5:c.556G>T	p.Gly186Cys	p.G186C	ENST00000171111	NM_203500.1	186	Ggc/Tgc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59770854	59770854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	54	329	0	ENST00000259008.2:c.2512G>C	p.Asp838His	p.D838H	ENST00000259008	NM_032043.2	838	Gat/Cat																																																																														
PPM1D	0	MSKCC	GRCh37	17	58725410	58725410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	101	438	0	ENST00000305921.3:c.984G>A	p.Met328Ile	p.M328I	ENST00000305921	NM_003620.3	328	atG/atA																																																																														
PTEN	0	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	51	262	0	ENST00000371953.3:c.635-1G>C		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
CD79A	0	MSKCC	GRCh37	19	42383185	42383185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	89	436	2	ENST00000221972.3:c.205G>A	p.Val69Ile	p.V69I	ENST00000221972	NM_021601.3	69	Gtc/Atc																																																																														
UPF1	0	MSKCC	GRCh37	19	18974258	18974258	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	58	335	0	ENST00000262803.5:c.2612T>A	p.Ile871Asn	p.I871N	ENST00000262803	NM_002911.3	871	aTc/aAc																																																																														
CCNE1	0	MSKCC	GRCh37	19	30308378	30308378	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	75	460	0	ENST00000262643.3:c.392A>G	p.Gln131Arg	p.Q131R	ENST00000262643	NM_001238.2	131	cAg/cGg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212578259	212578259	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	58	351	0	ENST00000342788.4:c.997+1G>T		p.X333_splice	ENST00000342788	NM_005235.2	333																																																																															
ASXL1	0	MSKCC	GRCh37	20	31019156	31019156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	81	367	0	ENST00000375687.4:c.751G>A	p.Asp251Asn	p.D251N	ENST00000375687	NM_015338.5	251	Gat/Aat																																																																														
FGFR1	0	MSKCC	GRCh37	8	38285908	38285908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	62	371	0	ENST00000425967.3:c.503C>G	p.Ser168Cys	p.S168C	ENST00000425967	NM_001174067.1	168	tCt/tGt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391869	139391869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	62	392	0	ENST00000277541.6:c.6322G>T	p.Asp2108Tyr	p.D2108Y	ENST00000277541	NM_017617.3	2108	Gac/Tac																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508977	106508977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	79	243	0	ENST00000359195.3:c.971C>A	p.Pro324Gln	p.P324Q	ENST00000359195	NM_002649.2	324	cCa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	222	643	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244139	46244139	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	30	395	1	ENST00000334344.6:c.2233C>T	p.Gln745Ter	p.Q745*	ENST00000334344	NM_152641.2	745	Cag/Tag																																																																														
PRKD1	0	MSKCC	GRCh37	14	30396541	30396541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	17	471	0	ENST00000331968.5:c.178G>A	p.Glu60Lys	p.E60K	ENST00000331968	NM_002742.2	60	Gag/Aag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857727	9857727	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	31	404	0	ENST00000330684.3:c.3674C>G	p.Ser1225Ter	p.S1225*	ENST00000330684	NM_001134407.1	1225	tCa/tGa																																																																														
STAT5A	0	MSKCC	GRCh37	17	40462677	40462677	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	26	435	0	ENST00000345506.4:c.2375C>A	p.Ser792Tyr	p.S792Y	ENST00000345506	NM_003152.3	792	tCc/tAc																																																																														
POLD1	0	MSKCC	GRCh37	19	50906777	50906777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	50	729	0	ENST00000440232.2:c.1165G>T	p.Asp389Tyr	p.D389Y	ENST00000440232	NM_002691.3	389	Gac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	500	603	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0025641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	169	234	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
WWTR1	0	MSKCC	GRCh37	3	149290773	149290774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	112	398	0	ENST00000360632.3:c.445dup	p.Ile149AsnfsTer8	p.I149Nfs*8	ENST00000360632	NM_015472.4	149	atc/aAtc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38285537	38285537	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	79	539	0	ENST00000425967.3:c.616A>C	p.Lys206Gln	p.K206Q	ENST00000425967	NM_001174067.1	206	Aag/Cag																																																																														
MYC	0	MSKCC	GRCh37	8	128750768	128750768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1383	236	439	0	ENST00000377970.2:c.305A>G	p.Asp102Gly	p.D102G	ENST00000377970	NM_002467.4	102	gAc/gGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	30	593	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0025642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	287	760	1	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																														
RB1	0	MSKCC	GRCh37	13	49033934	49033934	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	32	515	1	ENST00000267163.4:c.2071G>T	p.Glu691Ter	p.E691*	ENST00000267163	NM_000321.2	691	Gag/Tag																																																																														
RAD50	0	MSKCC	GRCh37	5	131944863	131944863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	35	332	0	ENST00000265335.6:c.2884G>C	p.Glu962Gln	p.E962Q	ENST00000265335		962	Gag/Cag																																																																														
RTEL1	0	MSKCC	GRCh37	20	62293900	62293900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	48	823	0	ENST00000508582.2:c.469C>T	p.Pro157Ser	p.P157S	ENST00000508582		157	Cct/Tct																																																																														
RBM10	0	MSKCC	GRCh37	X	47045464	47045464	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0025642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	31	506	0	ENST00000329236.7:c.2197C>T	p.Gln733Ter	p.Q733*	ENST00000329236	NM_001204466.1	733	Caa/Taa																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	115	489	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	61	421	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
MTOR	0	MSKCC	GRCh37	1	11186681	11186681	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0025644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	63	513	0	ENST00000361445.4:c.6524T>C	p.Met2175Thr	p.M2175T	ENST00000361445	NM_004958.3	2175	aTg/aCg																																																																														
TBX3	0	MSKCC	GRCh37	12	115120920	115120921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGAA			P-0025644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	43	460	0	ENST00000257566.3:c.82_85dup	p.Ala29ValfsTer83	p.A29Vfs*83	ENST00000257566	NM_016569.3	29	gcc/gTTCGcc																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	228	556	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427506	49427506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	43	477	0	ENST00000301067.7:c.10982G>T	p.Gly3661Val	p.G3661V	ENST00000301067	NM_003482.3	3661	gGt/gTt																																																																														
RB1	0	MSKCC	GRCh37	13	48947607	48947638	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATCTGATTTCCTATTTTAACGTAAGCCATA	AAATCTGATTTCCTATTTTAACGTAAGCCATA	TCAT			P-0025645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	31	493	1	ENST00000267163.4:c.1194_1215+10delinsTCAT		p.X398_splice	ENST00000267163	NM_000321.2	398																																																																															
CYSLTR2	0	MSKCC	GRCh37	13	49281668	49281668	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201815757		P-0025645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	16	699	2	ENST00000282018.3:c.715C>T	p.Arg239Trp	p.R239W	ENST00000282018	NM_020377.2	239	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	25	647	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827958	40827958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	43	515	0	ENST00000373198.4:c.2470G>T	p.Asp824Tyr	p.D824Y	ENST00000373198	NM_133170.3	824	Gac/Tac																																																																														
RRAS	0	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	63	581	0	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	54	573	1	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
PLCG2	0	MSKCC	GRCh37	16	81953115	81953115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	27	280	0	ENST00000359376.3:c.2081G>A	p.Arg694His	p.R694H	ENST00000359376	NM_002661.3	694	cGc/cAc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18650671	18650671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	26	432	0	ENST00000266497.5:c.2882G>T	p.Gly961Val	p.G961V	ENST00000266497		961	gGa/gTa																																																																														
AKT3	0	MSKCC	GRCh37	1	243716199	243716199	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	43	638	0	ENST00000263826.5:c.995T>C	p.Leu332Pro	p.L332P	ENST00000263826	NM_005465.4	332	cTa/cCa																																																																														
TBX3	0	MSKCC	GRCh37	12	115112575	115112575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	67	694	0	ENST00000257566.3:c.1165G>T	p.Ala389Ser	p.A389S	ENST00000257566	NM_016569.3	389	Gcc/Tcc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81953262	81953262	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	28	294	1	ENST00000359376.3:c.2228A>T	p.Tyr743Phe	p.Y743F	ENST00000359376	NM_002661.3	743	tAc/tTc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716302	52716302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	66	578	0	ENST00000322088.6:c.746G>C	p.Arg249Pro	p.R249P	ENST00000322088	NM_014225.5	249	cGc/cCc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714388	40714388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	44	586	0	ENST00000373198.4:c.4009C>A	p.Arg1337Ser	p.R1337S	ENST00000373198	NM_133170.3	1337	Cgc/Agc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62294205	62294205	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	43	659	0	ENST00000508582.2:c.574del	p.Ala192GlnfsTer11	p.A192Qfs*11	ENST00000508582		191	gtG/gt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133836	55133836	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	34	415	0	ENST00000257290.5:c.1049T>A	p.Leu350Gln	p.L350Q	ENST00000257290	NM_006206.4	350	cTg/cAg																																																																														
RASA1	0	MSKCC	GRCh37	5	86681116	86681116	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	30	311	0	ENST00000274376.6:c.2759-2A>G		p.X920_splice	ENST00000274376	NM_002890.2	920																																																																															
PIK3CG	0	MSKCC	GRCh37	7	106522603	106522603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	40	552	0	ENST00000359195.3:c.2580G>T	p.Leu860Phe	p.L860F	ENST00000359195	NM_002649.2	860	ttG/ttT																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974760	21974760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	30	228	0	ENST00000304494.5:c.67G>T	p.Gly23Cys	p.G23C	ENST00000304494	NM_000077.4	23	Ggt/Tgt																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974760	21974760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	30	228	0	ENST00000304494.5:c.67G>T	p.Gly23Cys	p.G23C	ENST00000304494	NM_000077.4	23	Ggt/Tgt																																																																														
TEK	0	MSKCC	GRCh37	9	27218804	27218804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	40	577	0	ENST00000380036.4:c.3092T>C	p.Ile1031Thr	p.I1031T	ENST00000380036	NM_000459.3	1031	aTt/aCt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390997	139390997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	58	803	1	ENST00000277541.6:c.7194G>T	p.Gln2398His	p.Q2398H	ENST00000277541	NM_017617.3	2398	caG/caT																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9782183	9782183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	91	478	1	ENST00000377346.4:c.2206G>A	p.Asp736Asn	p.D736N	ENST00000377346	NM_005026.3	736	Gac/Aac																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9783342	9783342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	126	510	0	ENST00000377346.4:c.2586G>T	p.Lys862Asn	p.K862N	ENST00000377346	NM_005026.3	862	aaG/aaT																																																																														
MTOR	0	MSKCC	GRCh37	1	11188578	11188578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	137	493	0	ENST00000361445.4:c.5843C>T	p.Thr1948Met	p.T1948M	ENST00000361445	NM_004958.3	1948	aCg/aTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11273622	11273622	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	69	316	0	ENST00000361445.4:c.3119A>C	p.Glu1040Ala	p.E1040A	ENST00000361445	NM_004958.3	1040	gAa/gCa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094441	27094441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	104	575	0	ENST00000324856.7:c.3149A>G	p.Asp1050Gly	p.D1050G	ENST00000324856	NM_006015.4	1050	gAc/gGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	131	530	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120491163	120491163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	116	524	1	ENST00000256646.2:c.2626G>A	p.Glu876Lys	p.E876K	ENST00000256646	NM_024408.3	876	Gag/Aag																																																																														
MCL1	0	MSKCC	GRCh37	1	150550886	150550886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	133	518	1	ENST00000369026.2:c.770G>A	p.Gly257Asp	p.G257D	ENST00000369026	NM_021960.4	257	gGc/gAc																																																																														
DDR2	0	MSKCC	GRCh37	1	162745466	162745466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	90	477	0	ENST00000367921.3:c.1881G>T	p.Lys627Asn	p.K627N	ENST00000367921	NM_006182.2	627	aaG/aaT																																																																														
IL10	0	MSKCC	GRCh37	1	206945656	206945656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	115	531	0	ENST00000423557.1:c.125G>A	p.Arg42Gln	p.R42Q	ENST00000423557	NM_000572.2	42	cGa/cAa																																																																														
AKT3	0	MSKCC	GRCh37	1	243809234	243809234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	81	638	0	ENST00000263826.5:c.390G>T	p.Glu130Asp	p.E130D	ENST00000263826	NM_005465.4	130	gaG/gaT																																																																														
TET1	0	MSKCC	GRCh37	10	70405334	70405334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	131	684	1	ENST00000373644.4:c.2848C>T	p.Pro950Ser	p.P950S	ENST00000373644	NM_030625.2	950	Cca/Tca																																																																														
TET1	0	MSKCC	GRCh37	10	70406078	70406078	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	116	623	0	ENST00000373644.4:c.3592T>G	p.Phe1198Val	p.F1198V	ENST00000373644	NM_030625.2	1198	Ttt/Gtt																																																																														
PTEN	0	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	70	192	1	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89720744	89720744	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	11	193	0	ENST00000371953.3:c.895G>T	p.Glu299Ter	p.E299*	ENST00000371953	NM_000314.4	299	Gaa/Taa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197297	94197297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	28	527	1	ENST00000323929.3:c.1207G>A	p.Glu403Lys	p.E403K	ENST00000323929	NM_005591.3	403	Gaa/Aaa																																																																														
PGR	0	MSKCC	GRCh37	11	100922251	100922251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	112	504	1	ENST00000325455.5:c.2261C>A	p.Ser754Tyr	p.S754Y	ENST00000325455	NM_001202474.3	754	tCt/tAt																																																																														
YAP1	0	MSKCC	GRCh37	11	102033294	102033294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	165	646	0	ENST00000282441.5:c.680C>T	p.Ser227Leu	p.S227L	ENST00000282441	NM_001130145.2	227	tCg/tTg																																																																														
ATM	0	MSKCC	GRCh37	11	108099946	108099946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	84	330	0	ENST00000278616.4:c.227G>T	p.Arg76Ile	p.R76I	ENST00000278616	NM_000051.3	76	aGa/aTa																																																																														
ATM	0	MSKCC	GRCh37	11	108196825	108196825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	98	469	0	ENST00000278616.4:c.6848C>A	p.Ser2283Ter	p.S2283*	ENST00000278616	NM_000051.3	2283	tCa/tAa																																																																														
ATM	0	MSKCC	GRCh37	11	108216568	108216568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	84	561	0	ENST00000278616.4:c.8517C>A	p.Phe2839Leu	p.F2839L	ENST00000278616	NM_000051.3	2839	ttC/ttA																																																																														
KMT2A	0	MSKCC	GRCh37	11	118371854	118371854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	106	500	0	ENST00000534358.1:c.6311C>A	p.Ser2104Tyr	p.S2104Y	ENST00000534358	NM_005933.3	2104	tCt/tAt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118392038	118392038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	140	612	0	ENST00000534358.1:c.11549G>T	p.Arg3850Ile	p.R3850I	ENST00000534358	NM_005933.3	3850	aGa/aTa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18656292	18656292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	118	583	0	ENST00000266497.5:c.2971G>A	p.Glu991Lys	p.E991K	ENST00000266497		991	Gaa/Aaa																																																																														
KRAS	0	MSKCC	GRCh37	12	25380289	25380289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	101	687	0	ENST00000256078.4:c.169G>A	p.Asp57Asn	p.D57N	ENST00000256078	NM_033360.2	57	Gac/Aac																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	169	743	1	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	126	534	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																																																														
GLI1	0	MSKCC	GRCh37	12	57864398	57864398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	107	631	0	ENST00000228682.2:c.1875G>T	p.Glu625Asp	p.E625D	ENST00000228682	NM_005269.2	625	gaG/gaT																																																																														
GLI1	0	MSKCC	GRCh37	12	57865732	57865732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	156	662	0	ENST00000228682.2:c.3209G>A	p.Ser1070Asn	p.S1070N	ENST00000228682	NM_005269.2	1070	aGc/aAc																																																																														
POLE	0	MSKCC	GRCh37	12	133244944	133244944	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs61734163		P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	155	753	0	ENST00000320574.5:c.2171C>T	p.Ala724Val	p.A724V	ENST00000320574	NM_006231.2	724	gCg/gTg																																																																														
POLE	0	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	128	644	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																																																														
FLT3	0	MSKCC	GRCh37	13	28601268	28601268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	143	625	0	ENST00000241453.7:c.2164A>G	p.Asn722Asp	p.N722D	ENST00000241453	NM_004119.2	722	Aat/Gat																																																																														
FLT1	0	MSKCC	GRCh37	13	28883013	28883013	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	129	644	0	ENST00000282397.4:c.3687A>C	p.Glu1229Asp	p.E1229D	ENST00000282397	NM_002019.4	1229	gaA/gaC																																																																														
FLT1	0	MSKCC	GRCh37	13	28931789	28931789	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	102	445	0	ENST00000282397.4:c.2150T>G	p.Phe717Cys	p.F717C	ENST00000282397	NM_002019.4	717	tTt/tGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912321	32912321	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	110	521	0	ENST00000380152.3:c.3829A>C	p.Asn1277His	p.N1277H	ENST00000380152		1277	Aat/Cat																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912414	32912414	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	84	455	0	ENST00000380152.3:c.3922G>T	p.Glu1308Ter	p.E1308*	ENST00000380152		1308	Gaa/Taa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914175	32914175	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146351301		P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	87	654	0	ENST00000380152.3:c.5683G>A	p.Glu1895Lys	p.E1895K	ENST00000380152		1895	Gag/Aag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32915129	32915129	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	118	582	0	ENST00000380152.3:c.6637T>G	p.Ser2213Ala	p.S2213A	ENST00000380152		2213	Tct/Gct																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134988	41134988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	48	297	1	ENST00000379561.5:c.640C>T	p.Arg214Cys	p.R214C	ENST00000379561	NM_002015.3	214	Cgt/Tgt																																																																														
RB1	0	MSKCC	GRCh37	13	49030340	49030340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	85	340	0	ENST00000267163.4:c.1815G>A	p.Met605Ile	p.M605I	ENST00000267163	NM_000321.2	605	atG/atA																																																																														
DIS3	0	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	80	380	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103504585	103504585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	127	509	1	ENST00000355739.4:c.206G>A	p.Arg69Gln	p.R69Q	ENST00000355739	NM_000123.3	69	cGa/cAa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103520557	103520557	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	74	398	0	ENST00000355739.4:c.2628A>C	p.Glu876Asp	p.E876D	ENST00000355739	NM_000123.3	876	gaA/gaC																																																																														
TSHR	0	MSKCC	GRCh37	14	81609899	81609899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	68	314	0	ENST00000298171.2:c.1497C>A	p.Phe499Leu	p.F499L	ENST00000298171	NM_000369.2	499	ttC/ttA																																																																														
SLX4	0	MSKCC	GRCh37	16	3639407	3639407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	100	641	1	ENST00000294008.3:c.4232G>T	p.Arg1411Ile	p.R1411I	ENST00000294008	NM_032444.2	1411	aGa/aTa																																																																														
SLX4	0	MSKCC	GRCh37	16	3658919	3658919	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	133	633	1	ENST00000294008.3:c.47C>A	p.Ser16Ter	p.S16*	ENST00000294008	NM_032444.2	16	tCa/tAa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3788637	3788637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	38	527	1	ENST00000262367.5:c.4317C>A	p.Phe1439Leu	p.F1439L	ENST00000262367	NM_004380.2	1439	ttC/ttA																																																																														
CDH1	0	MSKCC	GRCh37	16	68862106	68862106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	141	506	1	ENST00000261769.5:c.2194C>T	p.Arg732Trp	p.R732W	ENST00000261769	NM_004360.3	732	Cgg/Tgg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81990354	81990354	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	128	569	0	ENST00000359376.3:c.3625G>T	p.Glu1209Ter	p.E1209*	ENST00000359376	NM_002661.3	1209	Gaa/Taa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350734	89350734	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146294483		P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	134	984	1	ENST00000301030.4:c.2216C>T	p.Ser739Leu	p.S739L	ENST00000301030	NM_001256183.1	739	tCg/tTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350854	89350854	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	202	923	0	ENST00000301030.4:c.2096A>C	p.Lys699Thr	p.K699T	ENST00000301030	NM_001256183.1	699	aAa/aCa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350856	89350856	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	216	919	1	ENST00000301030.4:c.2094G>T	p.Glu698Asp	p.E698D	ENST00000301030	NM_001256183.1	698	gaG/gaT																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7980361	7980361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	139	622	1	ENST00000319144.4:c.1222G>A	p.Ala408Thr	p.A408T	ENST00000319144	NM_001139.2	408	Gcc/Acc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16012103	16012103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	96	500	0	ENST00000268712.3:c.2179G>A	p.Glu727Lys	p.E727K	ENST00000268712	NM_006311.3	727	Gaa/Aaa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16049801	16049801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	108	537	0	ENST00000268712.3:c.971G>T	p.Arg324Ile	p.R324I	ENST00000268712	NM_006311.3	324	aGa/aTa																																																																														
STAT5A	0	MSKCC	GRCh37	17	40460234	40460234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	126	586	0	ENST00000345506.4:c.1945C>T	p.Arg649Trp	p.R649W	ENST00000345506	NM_003152.3	649	Cgg/Tgg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41234548	41234548	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	106	585	0	ENST00000357654.3:c.4230A>C	p.Glu1410Asp	p.E1410D	ENST00000357654	NM_007294.3	1410	gaA/gaC																																																																														
RAD51C	0	MSKCC	GRCh37	17	56801452	56801452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	114	553	1	ENST00000337432.4:c.956G>A	p.Arg319Gln	p.R319Q	ENST00000337432	NM_058216.2	319	cGa/cAa																																																																														
PPM1D	0	MSKCC	GRCh37	17	58734155	58734155	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	130	739	0	ENST00000305921.3:c.1213G>T	p.Glu405Ter	p.E405*	ENST00000305921	NM_003620.3	405	Gaa/Taa																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39575956	39575956	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	87	393	0	ENST00000262039.4:c.889A>C	p.Asn297His	p.N297H	ENST00000262039	NM_002647.2	297	Aat/Cat																																																																														
MALT1	0	MSKCC	GRCh37	18	56415044	56415044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	96	468	1	ENST00000348428.3:c.2445C>A	p.Phe815Leu	p.F815L	ENST00000348428	NM_006785.3	815	ttC/ttA																																																																														
INSR	0	MSKCC	GRCh37	19	7125473	7125473	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	173	669	0	ENST00000302850.5:c.3079C>T	p.Arg1027Ter	p.R1027*	ENST00000302850	NM_000208.2	1027	Cga/Tga																																																																														
INSR	0	MSKCC	GRCh37	19	7152773	7152773	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	152	719	0	ENST00000302850.5:c.2195T>G	p.Phe732Cys	p.F732C	ENST00000302850	NM_000208.2	732	tTt/tGt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10259612	10259612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	147	629	4	ENST00000340748.4:c.2620G>A	p.Ala874Thr	p.A874T	ENST00000340748		874	Gcg/Acg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10279024	10279024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	165	646	1	ENST00000340748.4:c.737G>A	p.Arg246Gln	p.R246Q	ENST00000340748		246	cGa/cAa																																																																														
JAK3	0	MSKCC	GRCh37	19	17955132	17955132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	122	670	0	ENST00000458235.1:c.95C>A	p.Ala32Asp	p.A32D	ENST00000458235	NM_000215.3	32	gCt/gAt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18277005	18277005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	112	549	0	ENST00000222254.8:c.1452C>A	p.Phe484Leu	p.F484L	ENST00000222254	NM_005027.3	484	ttC/ttA																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257194	19257194	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	87	574	0	ENST00000162023.5:c.770-1G>T		p.X257_splice	ENST00000162023		257																																																																															
KMT2B	0	MSKCC	GRCh37	19	36228800	36228800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	150	731	0	ENST00000222270.7:c.7699C>T	p.Arg2567Cys	p.R2567C	ENST00000222270	NM_014727.1	2567	Cgt/Tgt																																																																														
AXL	0	MSKCC	GRCh37	19	41726557	41726557	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	124	564	0	ENST00000301178.4:c.102A>C	p.Glu34Asp	p.E34D	ENST00000301178	NM_021913.4	34	gaA/gaC																																																																														
INPP4A	0	MSKCC	GRCh37	2	99185041	99185041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	125	418	0	ENST00000074304.5:c.2443G>A	p.Asp815Asn	p.D815N	ENST00000074304	NM_001134224.1	815	Gat/Aat																																																																														
ERCC3	0	MSKCC	GRCh37	2	128036895	128036895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	176	660	1	ENST00000285398.2:c.1584G>T	p.Lys528Asn	p.K528N	ENST00000285398	NM_000122.1	528	aaG/aaT																																																																														
ACVR1	0	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	80	350	0	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095920	178095920	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	118	469	0	ENST00000397062.3:c.1411G>T	p.Glu471Ter	p.E471*	ENST00000397062	NM_006164.4	471	Gaa/Taa																																																																														
CASP8	0	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	121	550	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																														
CASP8	0	MSKCC	GRCh37	2	202136279	202136279	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	148	703	0	ENST00000358485.4:c.523G>T	p.Glu175Ter	p.E175*	ENST00000358485	NM_001080125.1	175	Gaa/Taa																																																																														
CUL3	0	MSKCC	GRCh37	2	225342999	225342999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	201	765	0	ENST00000264414.4:c.2093A>G	p.Asp698Gly	p.D698G	ENST00000264414	NM_003590.4	698	gAc/gGc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31394052	31394052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	122	474	0	ENST00000328111.2:c.2339C>T	p.Ser780Leu	p.S780L	ENST00000328111	NM_006892.3	780	tCg/tTg																																																																														
TOP1	0	MSKCC	GRCh37	20	39741497	39741497	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	117	413	1	ENST00000361337.2:c.1384C>T	p.Arg462Ter	p.R462*	ENST00000361337	NM_003286.2	462	Cga/Tga																																																																														
RTEL1	0	MSKCC	GRCh37	20	62294236	62294236	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184051277		P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	156	594	1	ENST00000508582.2:c.604G>A	p.Val202Ile	p.V202I	ENST00000508582		202	Gta/Ata																																																																														
ERG	0	MSKCC	GRCh37	21	39755477	39755477	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	121	435	0	ENST00000288319.7:c.1288T>G	p.Phe430Val	p.F430V	ENST00000288319	NM_182918.3	430	Ttt/Gtt																																																																														
MAPK1	0	MSKCC	GRCh37	22	22143009	22143009	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	126	546	0	ENST00000215832.6:c.698A>C	p.Tyr233Ser	p.Y233S	ENST00000215832	NM_002745.4	233	tAt/tCt																																																																														
EP300	0	MSKCC	GRCh37	22	41545781	41545781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	138	608	0	ENST00000263253.7:c.2396C>A	p.Ser799Tyr	p.S799Y	ENST00000263253	NM_001429.3	799	tCt/tAt																																																																														
EP300	0	MSKCC	GRCh37	22	41547910	41547910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	139	554	1	ENST00000263253.7:c.2891C>A	p.Ser964Tyr	p.S964Y	ENST00000263253	NM_001429.3	964	tCt/tAt																																																																														
RAF1	0	MSKCC	GRCh37	3	12653459	12653459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	118	455	0	ENST00000251849.4:c.310G>A	p.Glu104Lys	p.E104K	ENST00000251849	NM_002880.3	104	Gaa/Aaa																																																																														
SETD2	0	MSKCC	GRCh37	3	47108593	47108593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	122	577	1	ENST00000409792.3:c.6076C>T	p.Pro2026Ser	p.P2026S	ENST00000409792	NM_014159.6	2026	Cca/Tca																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73096457	73096458	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	48	275	0	ENST00000356692.5:c.240dup	p.Asp81Ter	p.D81*	ENST00000356692		79	-/T																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259409	89259409	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	113	587	0	ENST00000336596.2:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000336596	NM_005233.5	185	Gat/Tat																																																																														
GSK3B	0	MSKCC	GRCh37	3	119721018	119721018	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	174	627	0	ENST00000316626.5:c.157G>T	p.Glu53Ter	p.E53*	ENST00000316626		53	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	119	733	3	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	103	524	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																																																														
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	116	491	1	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41749491	41749491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	141	468	0	ENST00000226382.2:c.304C>A	p.Arg102Ser	p.R102S	ENST00000226382	NM_003924.3	102	Cgc/Agc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55151648	55151648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	183	605	0	ENST00000257290.5:c.2434A>G	p.Lys812Glu	p.K812E	ENST00000257290	NM_006206.4	812	Aaa/Gaa																																																																														
KIT	0	MSKCC	GRCh37	4	55565858	55565858	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	136	585	0	ENST00000288135.5:c.682G>T	p.Glu228Ter	p.E228*	ENST00000288135	NM_000222.2	228	Gaa/Taa																																																																														
KIT	0	MSKCC	GRCh37	4	55569934	55569934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	81	441	0	ENST00000288135.5:c.801C>A	p.Phe267Leu	p.F267L	ENST00000288135	NM_000222.2	267	ttC/ttA																																																																														
KDR	0	MSKCC	GRCh37	4	55980349	55980349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	104	584	1	ENST00000263923.4:c.742G>A	p.Ala248Thr	p.A248T	ENST00000263923	NM_002253.2	248	Gca/Aca																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197841	66197841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	63	321	0	ENST00000273854.3:c.2858C>A	p.Ser953Tyr	p.S953Y	ENST00000273854	NM_004439.5	953	tCt/tAt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213872	66213872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	128	593	0	ENST00000273854.3:c.2558G>A	p.Arg853Gln	p.R853Q	ENST00000273854	NM_004439.5	853	cGa/cAa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280068	66280068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	73	368	0	ENST00000273854.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000273854	NM_004439.5	541	Cga/Tga																																																																														
FAM175A	0	MSKCC	GRCh37	4	84383932	84383932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	139	645	1	ENST00000321945.7:c.920C>A	p.Ser307Tyr	p.S307Y	ENST00000321945	NM_139076.2	307	tCt/tAt																																																																														
TET2	0	MSKCC	GRCh37	4	106193889	106193889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	109	348	0	ENST00000380013.4:c.4351C>T	p.Arg1451Trp	p.R1451W	ENST00000380013	NM_001127208.2	1451	Cgg/Tgg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143159099	143159099	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1332432216		P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	160	602	0	ENST00000262992.4:c.754C>T	p.Arg252Ter	p.R252*	ENST00000262992	NM_001101669.1	252	Cga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187522574	187522574	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	90	430	0	ENST00000441802.2:c.11489C>A	p.Ser3830Ter	p.S3830*	ENST00000441802	NM_005245.3	3830	tCa/tAa																																																																														
FAT1	0	MSKCC	GRCh37	4	187539630	187539630	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	80	489	0	ENST00000441802.2:c.8110T>G	p.Ser2704Ala	p.S2704A	ENST00000441802	NM_005245.3	2704	Tca/Gca																																																																														
FAT1	0	MSKCC	GRCh37	4	187540418	187540418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	101	453	0	ENST00000441802.2:c.7322A>G	p.Asp2441Gly	p.D2441G	ENST00000441802	NM_005245.3	2441	gAc/gGc																																																																														
FAT1	0	MSKCC	GRCh37	4	187540974	187540974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	113	368	2	ENST00000441802.2:c.6766G>A	p.Ala2256Thr	p.A2256T	ENST00000441802	NM_005245.3	2256	Gca/Aca																																																																														
FAT1	0	MSKCC	GRCh37	4	187629775	187629776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	152	757	0	ENST00000441802.2:c.1206dup	p.Lys403Ter	p.K403*	ENST00000441802	NM_005245.3	402	-/T																																																																														
TERT	0	MSKCC	GRCh37	5	1282603	1282603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	151	663	2	ENST00000310581.5:c.1710G>T	p.Lys570Asn	p.K570N	ENST00000310581	NM_198253.2	570	aaG/aaT																																																																														
TERT	0	MSKCC	GRCh37	5	1282650	1282650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	144	686	1	ENST00000310581.5:c.1663G>A	p.Glu555Lys	p.E555K	ENST00000310581	NM_198253.2	555	Gag/Aag																																																																														
DROSHA	0	MSKCC	GRCh37	5	31435876	31435876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	28	445	0	ENST00000344624.3:c.3038C>T	p.Ala1013Val	p.A1013V	ENST00000344624		1013	gCa/gTa																																																																														
DROSHA	29102	MSKCC	GRCh37	5	31515591	31515591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	94	440	0	ENST00000344624.3:c.1028C>A	p.Ser343Tyr	p.S343Y	ENST00000344624		343	tCt/tAt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35860991	35860991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	82	412	0	ENST00000303115.3:c.120C>A	p.Phe40Leu	p.F40L	ENST00000303115	NM_002185.3	40	ttC/ttA																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38944612	38944612	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs777123686		P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	118	610	1	ENST00000357387.3:c.4849C>A	p.Leu1617Ile	p.L1617I	ENST00000357387	NM_152756.3	1617	Cta/Ata																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56183255	56183255	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	132	563	1	ENST00000399503.3:c.4165T>A	p.Phe1389Ile	p.F1389I	ENST00000399503	NM_005921.1	1389	Ttt/Att																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	115	451	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																																																														
RASA1	0	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	81	462	1	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa																																																																														
RASA1	0	MSKCC	GRCh37	5	86658429	86658429	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181630831		P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	66	360	0	ENST00000274376.6:c.1394G>A	p.Arg465His	p.R465H	ENST00000274376	NM_002890.2	465	cGt/cAt																																																																														
RASA1	0	MSKCC	GRCh37	5	86667972	86667972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	70	427	1	ENST00000274376.6:c.1736G>A	p.Arg579Gln	p.R579Q	ENST00000274376	NM_002890.2	579	cGg/cAg																																																																														
RASA1	0	MSKCC	GRCh37	5	86682712	86682712	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	37	306	0	ENST00000274376.6:c.2917G>T	p.Glu973Ter	p.E973*	ENST00000274376	NM_002890.2	973	Gaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112151262	112151262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	118	485	0	ENST00000257430.4:c.905G>A	p.Arg302Gln	p.R302Q	ENST00000257430	NM_000038.5	302	cGa/cAa																																																																														
APC	0	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	101	452	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112178211	112178211	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	89	369	2	ENST00000257430.4:c.6920C>A	p.Ser2307Ter	p.S2307*	ENST00000257430	NM_000038.5	2307	tCg/tAg																																																																														
APC	0	MSKCC	GRCh37	5	112179582	112179582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	74	396	1	ENST00000257430.4:c.8291C>A	p.Ser2764Tyr	p.S2764Y	ENST00000257430	NM_000038.5	2764	tCt/tAt																																																																														
NSD1	0	MSKCC	GRCh37	5	176665452	176665452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	106	452	0	ENST00000439151.2:c.4136C>T	p.Pro1379Leu	p.P1379L	ENST00000439151	NM_022455.4	1379	cCg/cTg																																																																														
NSD1	0	MSKCC	GRCh37	5	176715908	176715908	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	53	610	1	ENST00000439151.2:c.6240C>A	p.Phe2080Leu	p.F2080L	ENST00000439151	NM_022455.4	2080	ttC/ttA																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170084	32170084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	42	717	1	ENST00000375023.3:c.3524C>T	p.Ala1175Val	p.A1175V	ENST00000375023	NM_004557.3	1175	gCc/gTc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32185028	32185028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	147	584	0	ENST00000375023.3:c.1640G>A	p.Arg547Gln	p.R547Q	ENST00000375023	NM_004557.3	547	cGa/cAa																																																																														
VEGFA	0	MSKCC	GRCh37	6	43748479	43748479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs45533131		P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	134	329	1	ENST00000523873.1:c.433C>T	p.Arg145Ter	p.R145*	ENST00000523873		145	Cga/Tga																																																																														
SESN1	0	MSKCC	GRCh37	6	109312010	109312010	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	41	690	1	ENST00000436639.2:c.1262C>A	p.Ser421Tyr	p.S421Y	ENST00000436639	NM_014454.2	421	tCt/tAt																																																																														
FYN	0	MSKCC	GRCh37	6	112020771	112020771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	137	442	0	ENST00000368678.4:c.800C>T	p.Ser267Leu	p.S267L	ENST00000368678		267	tCg/tTg																																																																														
ROS1	0	MSKCC	GRCh37	6	117639408	117639408	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	107	601	0	ENST00000368508.3:c.5948A>C	p.Lys1983Thr	p.K1983T	ENST00000368508	NM_002944.2	1983	aAg/aCg																																																																														
ROS1	0	MSKCC	GRCh37	6	117662700	117662700	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	100	543	1	ENST00000368508.3:c.4765G>T	p.Glu1589Ter	p.E1589*	ENST00000368508	NM_002944.2	1589	Gaa/Taa																																																																														
ROS1	0	MSKCC	GRCh37	6	117700267	117700267	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	119	612	0	ENST00000368508.3:c.2552A>C	p.Asp851Ala	p.D851A	ENST00000368508	NM_002944.2	851	gAc/gCc																																																																														
ROS1	0	MSKCC	GRCh37	6	117715865	117715865	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	123	531	0	ENST00000368508.3:c.893A>C	p.Lys298Thr	p.K298T	ENST00000368508	NM_002944.2	298	aAa/aCa																																																																														
HGF	0	MSKCC	GRCh37	7	81374327	81374327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	40	346	0	ENST00000222390.5:c.735C>A	p.Phe245Leu	p.F245L	ENST00000222390	NM_000601.4	245	ttC/ttA																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509723	106509723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	112	504	0	ENST00000359195.3:c.1717G>T	p.Glu573Ter	p.E573*	ENST00000359195	NM_002649.2	573	Gaa/Taa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151864383	151864383	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	136	556	1	ENST00000262189.6:c.9598G>T	p.Glu3200Ter	p.E3200*	ENST00000262189	NM_170606.2	3200	Gaa/Taa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205107	38205107	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	152	698	0	ENST00000317025.8:c.583G>T	p.Glu195Ter	p.E195*	ENST00000317025	NM_023034.1	195	Gaa/Taa																																																																														
PRDM14	0	MSKCC	GRCh37	8	70980488	70980488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	181	764	3	ENST00000276594.2:c.889G>A	p.Gly297Arg	p.G297R	ENST00000276594	NM_024504.3	297	Gga/Aga																																																																														
AGO2	0	MSKCC	GRCh37	8	141566057	141566057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	167	682	1	ENST00000220592.5:c.1207G>T	p.Asp403Tyr	p.D403Y	ENST00000220592	NM_012154.3	403	Gat/Tat																																																																														
JAK2	0	MSKCC	GRCh37	9	5054631	5054631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	95	394	0	ENST00000381652.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000381652	NM_004972.3	228	cGa/cAa																																																																														
JAK2	0	MSKCC	GRCh37	9	5054768	5054768	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	67	472	1	ENST00000381652.3:c.820G>T	p.Glu274Ter	p.E274*	ENST00000381652	NM_004972.3	274	Gaa/Taa																																																																														
JAK2	0	MSKCC	GRCh37	9	5066740	5066740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	98	536	1	ENST00000381652.3:c.1277G>A	p.Arg426Gln	p.R426Q	ENST00000381652	NM_004972.3	426	cGa/cAa																																																																														
JAK2	0	MSKCC	GRCh37	9	5090886	5090886	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	42	217	0	ENST00000381652.3:c.3034G>T	p.Glu1012Ter	p.E1012*	ENST00000381652	NM_004972.3	1012	Gaa/Taa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87322770	87322770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	119	583	0	ENST00000277120.3:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000277120		124	cGa/cAa																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891367	101891367	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	84	561	0	ENST00000374994.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000374994	NM_004612.2	110	Gaa/Taa																																																																														
BCOR	0	MSKCC	GRCh37	X	39916526	39916526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	178	741	7	ENST00000378444.4:c.4477C>T	p.Arg1493Trp	p.R1493W	ENST00000378444	NM_001123385.1	1493	Cgg/Tgg																																																																														
BCOR	0	MSKCC	GRCh37	X	39931741	39931741	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	130	682	0	ENST00000378444.4:c.2858A>C	p.Lys953Thr	p.K953T	ENST00000378444	NM_001123385.1	953	aAa/aCa																																																																														
ARAF	0	MSKCC	GRCh37	X	47430353	47430353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	128	719	3	ENST00000377045.4:c.1628G>A	p.Arg543Gln	p.R543Q	ENST00000377045	NM_001654.4	543	cGg/cAg																																																																														
AR	0	MSKCC	GRCh37	X	66765883	66765883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	125	787	0	ENST00000374690.3:c.895G>A	p.Ala299Thr	p.A299T	ENST00000374690	NM_000044.3	299	Gca/Aca																																																																														
AR	0	MSKCC	GRCh37	X	66766507	66766507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	126	600	0	ENST00000374690.3:c.1519G>A	p.Gly507Ser	p.G507S	ENST00000374690	NM_000044.3	507	Ggc/Agc																																																																														
ATRX	0	MSKCC	GRCh37	X	76888736	76888736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	116	669	2	ENST00000373344.5:c.5093G>A	p.Arg1698Gln	p.R1698Q	ENST00000373344	NM_000489.3	1698	cGg/cAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76891508	76891508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	120	663	0	ENST00000373344.5:c.4597A>G	p.Ile1533Val	p.I1533V	ENST00000373344	NM_000489.3	1533	Ata/Gta																																																																														
ATRX	0	MSKCC	GRCh37	X	76937587	76937587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	73	515	0	ENST00000373344.5:c.3161C>A	p.Ser1054Tyr	p.S1054Y	ENST00000373344	NM_000489.3	1054	tCt/tAt																																																																														
ATRX	0	MSKCC	GRCh37	X	76939051	76939051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	115	636	1	ENST00000373344.5:c.1697C>A	p.Ser566Tyr	p.S566Y	ENST00000373344	NM_000489.3	566	tCt/tAt																																																																														
ATRX	0	MSKCC	GRCh37	X	76949379	76949379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	117	667	2	ENST00000373344.5:c.418G>T	p.Asp140Tyr	p.D140Y	ENST00000373344	NM_000489.3	140	Gat/Tat																																																																														
XIAP	0	MSKCC	GRCh37	X	123020155	123020155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	211	719	0	ENST00000355640.3:c.643C>T	p.Arg215Cys	p.R215C	ENST00000355640		215	Cgt/Tgt																																																																														
STAG2	0	MSKCC	GRCh37	X	123234427	123234427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	96	609	0	ENST00000218089.9:c.3787C>A	p.Leu1263Ile	p.L1263I	ENST00000218089	NM_001042749.1	1263	Ctt/Att																																																																														
FAM58A	0	MSKCC	GRCh37	X	152861587	152861587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	199	712	0	ENST00000406277.2:c.165G>T	p.Lys55Asn	p.K55N	ENST00000406277	NM_152274.4	55	aaG/aaT																																																																														
RB1	0	MSKCC	GRCh37	13	49047507	49047507	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	335	495	0	ENST00000267163.4:c.2501C>A	p.Ser834Ter	p.S834*	ENST00000267163	NM_000321.2	834	tCa/tAa																																																																														
MAX	0	MSKCC	GRCh37	14	65560468	65560468	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	413	543	0	ENST00000358664.4:c.129del	p.His44ThrfsTer21	p.H44Tfs*21	ENST00000358664	NM_002382.4	43	ttT/tt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341195	8341195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	341	539	1	ENST00000356435.5:c.5021G>A	p.Arg1674His	p.R1674H	ENST00000356435		1674	cGc/cAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8100784	8100784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	105	595	0	ENST00000346208.3:c.758C>A	p.Pro253His	p.P253H	ENST00000346208		253	cCc/cAc																																																																														
TBX3	0	MSKCC	GRCh37	12	115118836	115118836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	50	480	1	ENST00000257566.3:c.505C>T	p.Arg169Trp	p.R169W	ENST00000257566	NM_016569.3	169	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	116	639	0	ENST00000269305.4:c.313G>C	p.Gly105Arg	p.G105R	ENST00000269305	NM_001126112.2	105	Ggc/Cgc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1952899	1952899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	118	501	0	ENST00000382891.5:c.1982G>T	p.Gly661Val	p.G661V	ENST00000382891	NM_133335.3	661	gGa/gTa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38148195	38148195	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	79	409	0	ENST00000317025.8:c.2916A>T	p.Arg972Ser	p.R972S	ENST00000317025	NM_023034.1	972	agA/agT																																																																														
PREX2	0	MSKCC	GRCh37	8	68995601	68995601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	142	583	0	ENST00000288368.4:c.2005C>T	p.Leu669Phe	p.L669F	ENST00000288368	NM_024870.2	669	Ctt/Ttt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970966	21970967	+	missense_variant	Missense_Mutation	DNP	CG	CG	AT			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	128	466	2	ENST00000304494.5:c.391_392delinsAT	p.Arg131Ile	p.R131I	ENST00000304494	NM_000077.4	131	CGc/ATc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970966	21970967	+	missense_variant	Missense_Mutation	DNP	CG	CG	AT			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	128	466	2	ENST00000304494.5:c.391_392delinsAT	p.Arg131Ile	p.R131I	ENST00000304494	NM_000077.4	131	CGc/ATc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971026	21971026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	107	316	0	ENST00000304494.5:c.332G>T	p.Gly111Val	p.G111V	ENST00000304494	NM_000077.4	111	gGc/gTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0025652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	146	591	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	79	686	2	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185165701	185165701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	56	471	1	ENST00000265026.3:c.976C>T	p.Arg326Trp	p.R326W	ENST00000265026	NM_004721.4	326	Cgg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16256326	16256326	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	108	645	0	ENST00000375759.3:c.3591A>T	p.Lys1197Asn	p.K1197N	ENST00000375759	NM_015001.2	1197	aaA/aaT																																																																														
SETD2	0	MSKCC	GRCh37	3	47125462	47125462	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	30	484	0	ENST00000409792.3:c.5808C>A	p.Cys1936Ter	p.C1936*	ENST00000409792	NM_014159.6	1936	tgC/tgA																																																																														
ETV1	0	MSKCC	GRCh37	7	14028634	14028634	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0025652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	127	564	0	ENST00000405192.2:c.44A>G	p.Asn15Ser	p.N15S	ENST00000405192	NM_001163147.1	15	aAt/aGt																																																																														
KIT	0	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	233	440	0	ENST00000288135.5:c.1669T>C	p.Trp557Arg	p.W557R	ENST00000288135	NM_000222.2	557	Tgg/Cgg																																																																														
BIRC3	0	MSKCC	GRCh37	11	102196062	102196062	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	37	302	0	ENST00000263464.3:c.822G>T	p.Glu274Asp	p.E274D	ENST00000263464	NM_001165.4	274	gaG/gaT																																																																														
PALB2	0	MSKCC	GRCh37	16	23646921	23646921	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	65	687	0	ENST00000261584.4:c.946C>A	p.Pro316Thr	p.P316T	ENST00000261584	NM_024675.3	316	Ccc/Acc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832563	72832563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	21	430	0	ENST00000268489.5:c.4018C>A	p.Gln1340Lys	p.Q1340K	ENST00000268489	NM_006885.3	1340	Caa/Aaa																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182662958	182662958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	40	467	0	ENST00000292782.4:c.704C>A	p.Ala235Glu	p.A235E	ENST00000292782	NM_020640.2	235	gCa/gAa																																																																														
MED12	0	MSKCC	GRCh37	X	70339940	70339940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	23	273	0	ENST00000374080.3:c.473G>T	p.Trp158Leu	p.W158L	ENST00000374080		158	tGg/tTg																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074279	8074279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	43	533	0	ENST00000377482.5:c.380C>A	p.Thr127Asn	p.T127N	ENST00000377482	NM_018948.3	127	aCc/aAc																																																																														
LATS2	0	MSKCC	GRCh37	13	21562792	21562792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	26	460	0	ENST00000382592.4:c.1127C>A	p.Ala376Asp	p.A376D	ENST00000382592	NM_014572.2	376	gCc/gAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49418607	49418607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	120	580	0	ENST00000301067.7:c.15907C>T	p.Arg5303Cys	p.R5303C	ENST00000301067	NM_003482.3	5303	Cgc/Tgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433129	49433129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	27	689	0	ENST00000301067.7:c.8242C>A	p.Leu2748Ile	p.L2748I	ENST00000301067	NM_003482.3	2748	Ctt/Att																																																																														
DICER1	0	MSKCC	GRCh37	14	95590990	95590990	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	11	243	0	ENST00000343455.3:c.919C>A	p.Arg307Ser	p.R307S	ENST00000343455	NM_177438.2	307	Cgt/Agt																																																																														
NTHL1	0	MSKCC	GRCh37	16	2097742	2097742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	36	668	0	ENST00000219066.1:c.107C>A	p.Pro36His	p.P36H	ENST00000219066	NM_002528.5	36	cCc/cAc																																																																														
CYLD	0	MSKCC	GRCh37	16	50826550	50826560	+	frameshift_variant	Frame_Shift_Del	DEL	GACTTTAAACT	GACTTTAAACT	TCG			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	91	510	1	ENST00000398568.2:c.2275_2285delinsTCG	p.Asp759SerfsTer3	p.D759Sfs*3	ENST00000398568	NM_001042412.1	759	GACTTTAAACTa/TCGa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016664	12016664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	21	416	0	ENST00000353533.5:c.800G>T	p.Arg267Met	p.R267M	ENST00000353533	NM_003010.3	267	aGg/aTg																																																																														
CALR	0	MSKCC	GRCh37	19	13049531	13049531	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	33	739	1	ENST00000316448.5:c.38G>T	p.Gly13Val	p.G13V	ENST00000316448	NM_004343.3	13	gGc/gTc																																																																														
IRS1	0	MSKCC	GRCh37	2	227661096	227661096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	35	626	0	ENST00000305123.5:c.2359C>A	p.Gln787Lys	p.Q787K	ENST00000305123	NM_005544.2	787	Cag/Aag																																																																														
NCOA3	0	MSKCC	GRCh37	20	46268368	46268368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	23	428	0	ENST00000371998.3:c.2755G>T	p.Asp919Tyr	p.D919Y	ENST00000371998		919	Gac/Tac																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665530	138665530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	21	439	0	ENST00000330315.3:c.35C>A	p.Ala12Glu	p.A12E	ENST00000330315	NM_023067.3	12	gCg/gAg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247190	153247190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	82	352	1	ENST00000281708.4:c.1612C>T	p.Gln538Ter	p.Q538*	ENST00000281708	NM_033632.3	538	Cag/Tag																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324627	31324635	+	inframe_deletion	In_Frame_Del	DEL	CGAACCTCA	CGAACCTCA	-			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	85	368	0	ENST00000412585.2:c.173_181del	p.Val58_Phe60del	p.V58_F60del	ENST00000412585	NM_005514.6	58	gTGAGGTTCGac/gac																																																																														
RBM10	0	MSKCC	GRCh37	X	47044544	47044544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	18	373	0	ENST00000329236.7:c.1807G>T	p.Asp603Tyr	p.D603Y	ENST00000329236	NM_001204466.1	603	Gat/Tat																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	24	525	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
EGFR	0	MSKCC	GRCh37	7	55242466	55242474	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGA	GAATTAAGA	-			P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	134	598	0	ENST00000275493.2:c.2239_2247delTTAAGAGAA	p.Leu747_Glu749del	p.L747_E749del	ENST00000275493	NM_005228.3	746	GAATTAAGA/-																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175843	176175843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	109	151	0	ENST00000367669.3:c.272G>A	p.Cys91Tyr	p.C91Y	ENST00000367669	NM_022457.5	91	tGc/tAc																																																																														
ATM	0	MSKCC	GRCh37	11	108196131	108196143	+	frameshift_variant	Frame_Shift_Del	DEL	ATCATGGCTCTAC	ATCATGGCTCTAC	-			P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	81	606	0	ENST00000278616.4:c.6667_6679del	p.Ile2223AlafsTer8	p.I2223Afs*8	ENST00000278616	NM_000051.3	2223	ATCATGGCTCTACgc/gc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029494	14029494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	42	443	0	ENST00000311895.7:c.1705G>T	p.Val569Leu	p.V569L	ENST00000311895	NM_005236.2	569	Gta/Tta																																																																														
SETD2	0	MSKCC	GRCh37	3	47079255	47079255	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	68	554	0	ENST00000409792.3:c.7251G>A	p.Trp2417Ter	p.W2417*	ENST00000409792	NM_014159.6	2417	tgG/tgA																																																																														
SETD2	0	MSKCC	GRCh37	3	47205375	47205375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	17	330	0	ENST00000409792.3:c.40G>T	p.Asp14Tyr	p.D14Y	ENST00000409792	NM_014159.6	14	Gat/Tat																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138196170	138196170	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	82	219	0	ENST00000237289.4:c.484C>T	p.Arg162Trp	p.R162W	ENST00000237289	NM_001270507.1	162	Cgg/Tgg																																																																														
ATM	0	MSKCC	GRCh37	11	108122563	108122563	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	302	272	0	ENST00000278616.4:c.1608-1G>C		p.X536_splice	ENST00000278616	NM_000051.3	536																																																																															
RPTOR	0	MSKCC	GRCh37	17	78896549	78896549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	177	426	0	ENST00000306801.3:c.2546G>A	p.Arg849His	p.R849H	ENST00000306801	NM_020761.2	849	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	21	425	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat																																																																														
DAXX	0	MSKCC	GRCh37	6	33288600	33288600	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	120	346	0	ENST00000374542.5:c.952C>T	p.Arg318Ter	p.R318*	ENST00000374542	NM_001141970.1	318	Cga/Tga																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439634	51439634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	144	384	0	ENST00000262662.1:c.199G>C	p.Asp67His	p.D67H	ENST00000262662		67	Gac/Cac																																																																														
MEN1	0	MSKCC	GRCh37	11	64577204	64577204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	216	557	1	ENST00000337652.1:c.378del	p.Trp126Ter	p.W126*	ENST00000337652	NM_130803.2	126	tgG/tg																																																																														
TSC2	0	MSKCC	GRCh37	16	2124308	2124317	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCTGCCT	GGCGCTGCCT	-			P-0025679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	212	639	0	ENST00000219476.3:c.2464_2473del	p.Ala822PhefsTer4	p.A822Ffs*4	ENST00000219476	NM_000548.3	821	aaGGCGCTGCCT/aa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821176	72821176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	37	697	0	ENST00000268489.5:c.10999G>A	p.Asp3667Asn	p.D3667N	ENST00000268489	NM_006885.3	3667	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	362	565	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	42	229	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
FGF3	0	MSKCC	GRCh37	11	69631101	69631101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	128	476	1	ENST00000334134.2:c.311G>A	p.Arg104Gln	p.R104Q	ENST00000334134	NM_005247.2	104	cGa/cAa																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67200305	67200305	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	118	433	0	ENST00000312629.5:c.613C>T	p.Gln205Ter	p.Q205*	ENST00000312629	NM_003952.2	205	Cag/Tag																																																																														
XPO1	0	MSKCC	GRCh37	2	61711103	61711103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	70	455	0	ENST00000401558.2:c.2646C>G	p.Phe882Leu	p.F882L	ENST00000401558	NM_003400.3	882	ttC/ttG																																																																														
TP63	0	MSKCC	GRCh37	3	189585706	189585706	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	92	448	0	ENST00000264731.3:c.967A>C	p.Ile323Leu	p.I323L	ENST00000264731	NM_003722.4	323	Atc/Ctc																																																																														
APC	0	MSKCC	GRCh37	5	112173780	112173780	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	112	328	0	ENST00000257430.4:c.2489delT	p.Val830GlyfsTer12	p.V830Gfs*12	ENST00000257430	NM_000038.5	830	gTg/gg																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858443	27858443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	146	343	0	ENST00000359303.2:c.128G>A	p.Arg43Lys	p.R43K	ENST00000359303	NM_003535.2	43	aGg/aAg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508508	106508508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	99	171	0	ENST00000359195.3:c.502G>A	p.Val168Met	p.V168M	ENST00000359195	NM_002649.2	168	Gtg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	457	522	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
NF1	0	MSKCC	GRCh37	17	29588751	29588751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	41	362	1	ENST00000358273.4:c.4600C>T	p.Arg1534Ter	p.R1534*	ENST00000358273	NM_001042492.2	1534	Cga/Tga																																																																														
RAD52	0	MSKCC	GRCh37	12	1023154	1023154	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	77	560	0	ENST00000358495.3:c.1101G>C	p.Gln367His	p.Q367H	ENST00000358495	NM_134424.2	367	caG/caC																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433005	49433005	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	34	497	2	ENST00000301067.7:c.8366G>A	p.Arg2789Gln	p.R2789Q	ENST00000301067	NM_003482.3	2789	cGg/cAg																																																																														
MSH2	0	MSKCC	GRCh37	2	47698153	47698154	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	69	533	3	ENST00000233146.2:c.1711_1712delinsAT	p.Glu571Ile	p.E571I	ENST00000233146	NM_000251.2	571	GAa/ATa																																																																														
TOP1	0	MSKCC	GRCh37	20	39726902	39726902	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	39	372	0	ENST00000361337.2:c.900T>A	p.Cys300Ter	p.C300*	ENST00000361337	NM_003286.2	300	tgT/tgA																																																																														
MDC1	0	MSKCC	GRCh37	6	30670337	30670337	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	97	462	0	ENST00000376406.3:c.6095C>G	p.Ser2032Cys	p.S2032C	ENST00000376406	NM_014641.2	2032	tCc/tGc																																																																														
MDC1	0	MSKCC	GRCh37	6	30673400	30673400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	358	615	1	ENST00000376406.3:c.3560C>G	p.Thr1187Ser	p.T1187S	ENST00000376406	NM_014641.2	1187	aCt/aGt																																																																														
ARAF	0	MSKCC	GRCh37	X	47429397	47429397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	27	561	0	ENST00000377045.4:c.1525T>C	p.Tyr509His	p.Y509H	ENST00000377045	NM_001654.4	509	Tac/Cac																																																																														
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	154	340	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	438	795	1	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971193	21971193	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	221	372	0	ENST00000304494.5:c.165del	p.Ser56AlafsTer90	p.S56Afs*90	ENST00000304494	NM_000077.4	55	ggC/gg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971193	21971193	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	221	372	0	ENST00000304494.5:c.165del	p.Ser56AlafsTer90	p.S56Afs*90	ENST00000304494	NM_000077.4	55	ggC/gg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971193	21971193	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	221	372	0	ENST00000304494.5:c.165del	p.Ser56AlafsTer90	p.S56Afs*90	ENST00000304494	NM_000077.4	55	ggC/gg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	83	374	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	90	374	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	64	275	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	88	412	4	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	74	269	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916648	178916648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	69	311	0	ENST00000263967.3:c.35G>A	p.Gly12Asp	p.G12D	ENST00000263967	NM_006218.2	12	gGc/gAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	98	458	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
IRF4	0	MSKCC	GRCh37	6	395910	395910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	53	328	0	ENST00000380956.4:c.467C>T	p.Thr156Met	p.T156M	ENST00000380956	NM_001195286.1	156	aCg/aTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	70	283	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
IKBKE	0	MSKCC	GRCh37	1	206648328	206648328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	75	389	1	ENST00000367120.3:c.349C>T	p.Arg117Cys	p.R117C	ENST00000367120	NM_014002.3	117	Cgc/Tgc																																																																														
KDR	0	MSKCC	GRCh37	4	55984813	55984813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200544155		P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	102	399	0	ENST00000263923.4:c.316C>T	p.Arg106Trp	p.R106W	ENST00000263923	NM_002253.2	106	Cgg/Tgg																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67202585	67202585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	86	396	0	ENST00000312629.5:c.1394G>A	p.Arg465His	p.R465H	ENST00000312629	NM_003952.2	465	cGt/cAt																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	48	226	0	ENST00000237289.4:c.1368delG	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832025	72832025	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	65	365	0	ENST00000268489.5:c.4556C>G	p.Ser1519Ter	p.S1519*	ENST00000268489	NM_006885.3	1519	tCa/tGa																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	39	108	0	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	82	527	0	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	72	439	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
SMO	0	MSKCC	GRCh37	7	128852216	128852216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	105	510	1	ENST00000249373.3:c.2288G>A	p.Arg763Gln	p.R763Q	ENST00000249373	NM_005631.4	763	cGa/cAa																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459795	149459795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	78	374	1	ENST00000286301.3:c.412G>A	p.Val138Ile	p.V138I	ENST00000286301	NM_005211.3	138	Gtc/Atc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376290	118376290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	87	382	0	ENST00000534358.1:c.9683G>A	p.Arg3228His	p.R3228H	ENST00000534358	NM_005933.3	3228	cGt/cAt																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	29	215	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67593346	67593346	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	82	253	0	ENST00000274335.5:c.2092T>A	p.Tyr698Asn	p.Y698N	ENST00000274335		698	Tac/Aac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023326	27023327	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	21	35	0	ENST00000324856.7:c.437dup	p.Ala147SerfsTer253	p.A147Sfs*253	ENST00000324856	NM_006015.4	144	-/C																																																																														
CSDE1	0	MSKCC	GRCh37	1	115275418	115275418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	94	319	0	ENST00000438362.2:c.995G>A	p.Arg332His	p.R332H	ENST00000438362	NM_001242891.1	332	cGc/cAc																																																																														
RIT1	0	MSKCC	GRCh37	1	155874257	155874257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	92	419	0	ENST00000368323.3:c.274G>A	p.Ala92Thr	p.A92T	ENST00000368323	NM_006912.5	92	Gca/Aca																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851963	63851963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	76	336	0	ENST00000279873.7:c.2741C>T	p.Pro914Leu	p.P914L	ENST00000279873	NM_032199.2	914	cCg/cTg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63530117	63530118	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	37	433	0	ENST00000307078.5:c.2317dup	p.Glu773GlyfsTer20	p.E773Gfs*20	ENST00000307078	NM_004655.3	773	gaa/gGaa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5231545	5231545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	59	288	1	ENST00000357368.4:c.1931C>T	p.Pro644Leu	p.P644L	ENST00000357368	NM_002850.3	644	cCg/cTg																																																																														
INSR	0	MSKCC	GRCh37	19	7184642	7184642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	31	140	2	ENST00000302850.5:c.659C>T	p.Pro220Leu	p.P220L	ENST00000302850	NM_000208.2	220	cCg/cTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10270571	10270571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	71	411	1	ENST00000340748.4:c.1069G>A	p.Gly357Arg	p.G357R	ENST00000340748		357	Ggg/Agg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10291170	10291170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	110	449	1	ENST00000340748.4:c.301C>T	p.Arg101Trp	p.R101W	ENST00000340748		101	Cgg/Tgg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99193506	99193506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	51	376	0	ENST00000074304.5:c.2701C>T	p.Arg901Cys	p.R901C	ENST00000074304	NM_001134224.1	901	Cgt/Tgt																																																																														
U2AF1	0	MSKCC	GRCh37	21	44515645	44515645	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	34	473	0	ENST00000291552.4:c.251A>G	p.Glu84Gly	p.E84G	ENST00000291552	NM_006758.2	84	gAg/gGg																																																																														
TET2	0	MSKCC	GRCh37	4	106196281	106196282	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAG			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	41	167	0	ENST00000380013.4:c.4624_4626dup	p.Gln1542dup	p.Q1542dup	ENST00000380013	NM_001127208.2	1542	-/CAG																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247184	153247185	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	82	249	0	ENST00000281708.4:c.1617dup	p.His540AlafsTer3	p.H540Afs*3	ENST00000281708	NM_033632.3	539	-/G																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67592115	67592115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	64	220	0	ENST00000274335.5:c.1931G>T	p.Gly644Val	p.G644V	ENST00000274335		644	gGc/gTc																																																																														
NSD1	0	MSKCC	GRCh37	5	176638209	176638209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	113	503	0	ENST00000439151.2:c.2809C>T	p.Arg937Trp	p.R937W	ENST00000439151	NM_022455.4	937	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	238	329	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	284	589	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	191	440	1	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	293	449	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
ATRX	0	MSKCC	GRCh37	X	76909655	76909655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	145	287	0	ENST00000373344.5:c.4250G>A	p.Arg1417Gln	p.R1417Q	ENST00000373344	NM_000489.3	1417	cGg/cAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604797	48604797	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	254	406	0	ENST00000342988.3:c.1619T>G	p.Leu540Arg	p.L540R	ENST00000342988	NM_005359.5	540	cTt/cGt																																																																														
AMER1	0	MSKCC	GRCh37	X	63412002	63412002	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	232	323	1	ENST00000330258.3:c.1165G>T	p.Glu389Ter	p.E389*	ENST00000330258	NM_152424.3	389	Gaa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	40	124	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	133	476	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27058033	27058033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	44	371	0	ENST00000324856.7:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000324856	NM_006015.4	581	Cag/Tag																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	71	317	0	ENST00000244661.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000244661	NM_003537.3	74	Gaa/Aaa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489544	56489544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	200	433	0	ENST00000267101.3:c.2009G>A	p.Arg670Gln	p.R670Q	ENST00000267101	NM_001982.3	670	cGg/cAg																																																																														
ELF3	0	MSKCC	GRCh37	1	201983120	201983121	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	111	448	1	ENST00000359651.3:c.970dup	p.Met324AsnfsTer147	p.M324Nfs*147	ENST00000359651		323	-/A																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444684	49444684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	115	642	1	ENST00000301067.7:c.2782C>T	p.Gln928Ter	p.Q928*	ENST00000301067	NM_003482.3	928	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444695	49444695	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	119	665	0	ENST00000301067.7:c.2771C>G	p.Ser924Cys	p.S924C	ENST00000301067	NM_003482.3	924	tCc/tGc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444956	49444956	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	84	383	0	ENST00000301067.7:c.2510C>G	p.Ser837Cys	p.S837C	ENST00000301067	NM_003482.3	837	tCt/tGt																																																																														
DIS3	0	MSKCC	GRCh37	13	73347854	73347854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	32	300	0	ENST00000377767.4:c.1207G>C	p.Asp403His	p.D403H	ENST00000377767	NM_014953.3	403	Gat/Cat																																																																														
DIS3	0	MSKCC	GRCh37	13	73347898	73347898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	42	354	0	ENST00000377767.4:c.1163G>C	p.Arg388Thr	p.R388T	ENST00000377767	NM_014953.3	388	aGa/aCa																																																																														
DIS3	0	MSKCC	GRCh37	13	73347927	73347927	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	37	275	0	ENST00000377767.4:c.1134G>C	p.Lys378Asn	p.K378N	ENST00000377767	NM_014953.3	378	aaG/aaC																																																																														
AXIN1	0	MSKCC	GRCh37	16	396863	396863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	77	500	0	ENST00000262320.3:c.163G>C	p.Glu55Gln	p.E55Q	ENST00000262320	NM_003502.3	55	Gag/Cag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15296095	15296095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	79	513	3	ENST00000263388.2:c.2269C>T	p.His757Tyr	p.H757Y	ENST00000263388	NM_000435.2	757	Cac/Tac																																																																														
ROS1	0	MSKCC	GRCh37	6	117631253	117631253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	47	377	0	ENST00000368508.3:c.6425C>T	p.Ser2142Phe	p.S2142F	ENST00000368508	NM_002944.2	2142	tCt/tTt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528052	157528052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	36	326	1	ENST00000346085.5:c.5777G>A	p.Arg1926Gln	p.R1926Q	ENST00000346085	NM_020732.3	1926	cGa/cAa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528852	157528852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	43	410	0	ENST00000346085.5:c.6577G>C	p.Asp2193His	p.D2193H	ENST00000346085	NM_020732.3	2193	Gac/Cac																																																																														
PRDM14	0	MSKCC	GRCh37	8	70978720	70978720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	96	440	0	ENST00000276594.2:c.933G>C	p.Leu311Phe	p.L311F	ENST00000276594	NM_024504.3	311	ttG/ttC																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922973	44922973	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	113	214	0	ENST00000377967.4:c.1834del	p.Arg612GlufsTer13	p.R612Efs*13	ENST00000377967	NM_021140.2	612	Cga/ga																																																																														
DIS3	0	MSKCC	GRCh37	13	73346398	73346400	+	stop_gained	Nonsense_Mutation	ONP	CTC	CTC	ATT			P-0025703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	59	338	0	ENST00000377767.4:c.1400_1402delinsAAT	p.Arg467_Glu468delinsGlnTer	p.R467_E468delinsQ*	ENST00000377767	NM_014953.3	467	cGAGaa/cAATaa																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871182	12871182	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	310	236	0	ENST00000228872.4:c.410delC	p.Pro137ArgfsTer8	p.P137Rfs*8	ENST00000228872	NM_004064.3	137	Ccg/cg																																																																														
IRS1	0	MSKCC	GRCh37	2	227660832	227660832	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	95	497	0	ENST00000305123.5:c.2623C>G	p.Arg875Gly	p.R875G	ENST00000305123	NM_005544.2	875	Cga/Gga																																																																														
KNSTRN	90417	MSKCC	GRCh37	15	40674826	40675230	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	CCCTAACAATCCCAAACTAAATAAAGAGGATTGTGACATGGACCCTAAATGTCGCCACGTTTGCGTCTCCATCCCGGAATATGACGCTGGTAGCTCATTAGCTCCATTCAAGCCTACAAATTGCATCACCCTCCTCCTCTGCCCAGACCTGGGGGCTCCAACACCTTTCGCTAGGTCTGGCTCTGGCCTCTGAGCGAACCTTCCGTACAGTATGGCGGCTCCCGAAGCCCCGCCCCTGGACAGAGTTTTCCGTACAACATGGCTGTCTACAGAGTGCGATTCCCACCCACTTCCGCCTAGCTACCGGAAGTTTCTATTTGAAACCCAGGCGGCCGACTTAGCCGGTGGCACGACAGTTGCTGCAGGGAATCTTTTAAACGAGAGCGAGAAGGACTGCGGGCAGGA	CCCTAACAATCCCAAACTAAATAAAGAGGATTGTGACATGGACCCTAAATGTCGCCACGTTTGCGTCTCCATCCCGGAATATGACGCTGGTAGCTCATTAGCTCCATTCAAGCCTACAAATTGCATCACCCTCCTCCTCTGCCCAGACCTGGGGGCTCCAACACCTTTCGCTAGGTCTGGCTCTGGCCTCTGAGCGAACCTTCCGTACAGTATGGCGGCTCCCGAAGCCCCGCCCCTGGACAGAGTTTTCCGTACAACATGGCTGTCTACAGAGTGCGATTCCCACCCACTTCCGCCTAGCTACCGGAAGTTTCTATTTGAAACCCAGGCGGCCGACTTAGCCGGTGGCACGACAGTTGCTGCAGGGAATCTTTTAAACGAGAGCGAGAAGGACTGCGGGCAGGA	-			P-0025704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	11	14	0				ENST00000249776	NM_033286.3			1/9																																																																													
PMS1	0	MSKCC	GRCh37	2	190682863	190682863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	64	596	0	ENST00000441310.2:c.539G>A	p.Gly180Asp	p.G180D	ENST00000441310	NM_000534.4	180	gGt/gAt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873075	134873075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	154	670	0	ENST00000398015.3:c.1379C>A	p.Pro460His	p.P460H	ENST00000398015	NM_004441.4	460	cCc/cAc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170147	32170147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	21	759	0	ENST00000375023.3:c.3461G>T	p.Gly1154Val	p.G1154V	ENST00000375023	NM_004557.3	1154	gGc/gTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878020	151878020	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	12	269	0	ENST00000262189.6:c.6925C>T	p.Gln2309Ter	p.Q2309*	ENST00000262189	NM_170606.2	2309	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0025708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	168	538	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ETV6	0	MSKCC	GRCh37	12	12006449	12006450	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0025708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	148	556	0	ENST00000396373.4:c.419_420delTA	p.Ile140ThrfsTer13	p.I140Tfs*13	ENST00000396373	NM_001987.4	139	tcTAta/tcta																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0025708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	316	544	11	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49448532	49448532	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	79	347	0	ENST00000301067.7:c.179G>T	p.Gly60Val	p.G60V	ENST00000301067	NM_003482.3	60	gGg/gTg																																																																														
BLM	0	MSKCC	GRCh37	15	91304429	91304429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	41	354	0	ENST00000355112.3:c.1826C>T	p.Pro609Leu	p.P609L	ENST00000355112	NM_000057.2	609	cCa/cTa																																																																														
SOX9	0	MSKCC	GRCh37	17	70118902	70118903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGC			P-0025708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	114	458	0	ENST00000245479.2:c.476_479dup	p.Leu161AlafsTer92	p.L161Afs*92	ENST00000245479	NM_000346.3	158	-/GAGC																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266041	41266373	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTA	CCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTA	-			P-0025708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	29	231	0	ENST00000349496.5:c.42_242-68del		p.X14_splice	ENST00000349496	NM_001904.3	14																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178943755	178943755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200671228		P-0025708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	78	322	0	ENST00000263967.3:c.2422C>T	p.Arg808Trp	p.R808W	ENST00000263967	NM_006218.2	808	Cgg/Tgg																																																																														
LATS1	0	MSKCC	GRCh37	6	150001284	150001284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	56	496	0	ENST00000253339.5:c.2320G>A	p.Asp774Asn	p.D774N	ENST00000253339		774	Gat/Aat																																																																														
HRAS	0	MSKCC	GRCh37	11	533552	533552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	16	782	0	ENST00000311189.7:c.351G>C	p.Lys117Asn	p.K117N	ENST00000311189		117	aaG/aaC																																																																														
KDM6A	0	MSKCC	GRCh37	X	44945148	44945148	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	130	285	0	ENST00000377967.4:c.3472A>T	p.Asn1158Tyr	p.N1158Y	ENST00000377967	NM_021140.2	1158	Aat/Tat																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	57	313	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	72	473	0	ENST00000269305.4:c.814G>C	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ctg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157256628	157256628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	86	264	0	ENST00000346085.5:c.1955G>C	p.Arg652Thr	p.R652T	ENST00000346085	NM_020732.3	652	aGa/aCa																																																																														
WT1	0	MSKCC	GRCh37	11	32413556	32413556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	282	342	0	ENST00000332351.3:c.1394A>G	p.His465Arg	p.H465R	ENST00000332351	NM_024426.4	465	cAc/cGc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446072	49446073	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0025664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	298	645	3	ENST00000301067.7:c.1392_1393dup	p.Ser465TyrfsTer466	p.S465Yfs*466	ENST00000301067	NM_003482.3	465	tca/tATca																																																																														
STK11	0	MSKCC	GRCh37	19	1221984	1221984	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	209	391	0	ENST00000326873.7:c.899T>A	p.Ile300Asn	p.I300N	ENST00000326873	NM_000455.4	300	aTc/aAc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602669	10602669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	145	487	1	ENST00000171111.5:c.909G>C	p.Lys303Asn	p.K303N	ENST00000171111	NM_203500.1	303	aaG/aaC																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714491	40714491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0025664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	141	238	1	ENST00000373198.4:c.3906C>G	p.Phe1302Leu	p.F1302L	ENST00000373198	NM_133170.3	1302	ttC/ttG																																																																														
BCL6	604	MSKCC	GRCh37	3	187447775	187447775	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs779270221		P-0025664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	96	285	0	ENST00000232014.4:c.418C>T	p.Arg140Cys	p.R140C	ENST00000232014	NM_001130845.1	140	Cgt/Tgt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244148	153244148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	123	381	1	ENST00000281708.4:c.2009G>A	p.Gly670Glu	p.G670E	ENST00000281708	NM_033632.3	670	gGa/gAa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	24	372	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	219	565	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
STK11	0	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	162	380	0	ENST00000326873.7:c.921-1G>C		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
JAK1	0	MSKCC	GRCh37	1	65311224	65311224	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	73	358	0	ENST00000342505.4:c.2087A>G	p.Lys696Arg	p.K696R	ENST00000342505	NM_002227.2	696	aAa/aGa																																																																														
RET	0	MSKCC	GRCh37	10	43608300	43608300	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	108	610	0	ENST00000355710.3:c.1649-1G>C		p.X550_splice	ENST00000355710	NM_020975.4	550																																																																															
WT1	0	MSKCC	GRCh37	11	32456271	32456271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	154	517	0	ENST00000332351.3:c.621G>T	p.Glu207Asp	p.E207D	ENST00000332351	NM_024426.4	207	gaG/gaT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427026	49427026	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	141	398	0	ENST00000301067.7:c.11462A>T	p.Gln3821Leu	p.Q3821L	ENST00000301067	NM_003482.3	3821	cAg/cTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427395	49427395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	205	575	2	ENST00000301067.7:c.11093G>A	p.Gly3698Asp	p.G3698D	ENST00000301067	NM_003482.3	3698	gGc/gAc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906702	32906702	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	119	428	0	ENST00000380152.3:c.1087A>G	p.Thr363Ala	p.T363A	ENST00000380152		363	Act/Gct																																																																														
IGF1R	0	MSKCC	GRCh37	15	99500637	99500637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	115	320	0	ENST00000268035.6:c.4070G>T	p.Arg1357Leu	p.R1357L	ENST00000268035	NM_000875.3	1357	cGg/cTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212257	5212257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	163	415	0	ENST00000357368.4:c.4774G>T	p.Gly1592Cys	p.G1592C	ENST00000357368	NM_002850.3	1592	Ggt/Tgt																																																																														
EPCAM	0	MSKCC	GRCh37	2	47606972	47606972	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	188	404	0	ENST00000263735.4:c.722A>G	p.Asp241Gly	p.D241G	ENST00000263735	NM_002354.2	241	gAt/gGt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873005	134873005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	177	536	1	ENST00000398015.3:c.1309G>T	p.Val437Phe	p.V437F	ENST00000398015	NM_004441.4	437	Gtt/Ttt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197772	66197772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	132	476	0	ENST00000273854.3:c.2927C>A	p.Ala976Glu	p.A976E	ENST00000273854	NM_004439.5	976	gCa/gAa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38953613	38953613	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	148	356	0	ENST00000357387.3:c.2740T>G	p.Leu914Val	p.L914V	ENST00000357387	NM_152756.3	914	Ttg/Gtg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67569238	67569238	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	143	418	0	ENST00000274335.5:c.355G>C	p.Ala119Pro	p.A119P	ENST00000274335		119	Gca/Cca																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449496	149449496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	165	513	0	ENST00000286301.3:c.1450G>A	p.Glu484Lys	p.E484K	ENST00000286301	NM_005211.3	484	Gag/Aag																																																																														
ESR1	0	MSKCC	GRCh37	6	152265377	152265377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	101	359	1	ENST00000206249.3:c.830G>A	p.Arg277Lys	p.R277K	ENST00000206249	NM_000125.3	277	aGg/aAg																																																																														
PARK2	0	MSKCC	GRCh37	6	162622219	162622219	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	93	411	1	ENST00000366898.1:c.478G>T	p.Gly160Ter	p.G160*	ENST00000366898	NM_004562.2	160	Gga/Tga																																																																														
HGF	0	MSKCC	GRCh37	7	81388100	81388100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	149	402	0	ENST00000222390.5:c.275C>A	p.Ala92Glu	p.A92E	ENST00000222390	NM_000601.4	92	gCa/gAa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509716	106509716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	97	432	1	ENST00000359195.3:c.1710G>T	p.Glu570Asp	p.E570D	ENST00000359195	NM_002649.2	570	gaG/gaT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8376642	8376642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	177	471	1	ENST00000356435.5:c.4471G>T	p.Ala1491Ser	p.A1491S	ENST00000356435		1491	Gcc/Tcc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391700	139391700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	292	582	0	ENST00000277541.6:c.6491A>G	p.Lys2164Arg	p.K2164R	ENST00000277541	NM_017617.3	2164	aAa/aGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007358-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			267	223	274	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182665029	182665029	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007358-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1420	131	579	0	ENST00000292782.4:c.697G>T	p.Glu233Ter	p.E233*	ENST00000292782	NM_020640.2	233	Gaa/Taa																																																																														
MLL2	0	MSKCC	GRCh37	12	49446734	49446734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007358-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			618	244	314	0	ENST00000301067.7:c.1076G>A	p.Arg359His	p.R359H	ENST00000301067	NM_003482.3	359	cGc/cAc																																																																														
STAT3	0	MSKCC	GRCh37	17	40481442	40481442	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007358-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			603	518	653	1	ENST00000264657.5:c.1267C>T	p.Arg423Ter	p.R423*	ENST00000264657	NM_139276.2	423	Cga/Tga																																																																														
IKBKE	0	MSKCC	GRCh37	1	206653453	206653464	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCATGTGAGTAA	TCATGTGAGTAA	-			P-0007358-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			339	58	172	0	ENST00000367120.3:c.1340+2_1340+13delTGAGTAATCATG		p.X447_splice	ENST00000367120	NM_014002.3	447																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32170054	32170054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			925	340	823	0	ENST00000375023.3:c.3554G>T	p.Gly1185Val	p.G1185V	ENST00000375023	NM_004557.3	1185	gGg/gTg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061192	38061192	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	565	431	0	ENST00000250448.2:c.797T>G	p.Phe266Cys	p.F266C	ENST00000250448	NM_004496.3	266	tTc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			225	595	673	1	ENST00000269305.4:c.823T>G	p.Cys275Gly	p.C275G	ENST00000269305	NM_001126112.2	275	Tgt/Ggt																																																																														
STAT5A	0	MSKCC	GRCh37	17	40460234	40460234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	260	604	0	ENST00000345506.4:c.1945C>T	p.Arg649Trp	p.R649W	ENST00000345506	NM_003152.3	649	Cgg/Tgg																																																																														
ATRX	0	MSKCC	GRCh37	X	76812945	76812947	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0010823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	216	292	3	ENST00000373344.5:c.6674_6676del	p.Lys2225del	p.K2225del	ENST00000373344	NM_000489.3	2225	aAGAgg/agg																																																																														
GATA3	0	MSKCC	GRCh37	10	8106002	8106002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	217	428	0	ENST00000346208.3:c.822G>T	p.Trp274Cys	p.W274C	ENST00000346208		274	tgG/tgT																																																																														
PBRM1	0	MSKCC	GRCh37	3	52682445	52682445	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			593	181	423	0	ENST00000394830.3:c.728A>G	p.Lys243Arg	p.K243R	ENST00000394830	NM_018313.4	243	aAa/aGa																																																																														
FAT1	0	MSKCC	GRCh37	4	187539789	187539789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			777	188	434	0	ENST00000441802.2:c.7951C>A	p.Leu2651Met	p.L2651M	ENST00000441802	NM_005245.3	2651	Ctg/Atg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964366	70964366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			3413	373	432	0	ENST00000276594.2:c.1662C>G	p.Ile554Met	p.I554M	ENST00000276594	NM_024504.3	554	atC/atG																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	241	563	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
APC	0	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0012419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			221	190	403	1	ENST00000257430.4:c.1312+1G>A		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																															
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	10	297	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
ALK	0	MSKCC	GRCh37	2	29432674	29432674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			483	106	536	1	ENST00000389048.3:c.3814G>A	p.Gly1272Arg	p.G1272R	ENST00000389048	NM_004304.4	1272	Ggg/Agg																																																																														
SESN3	0	MSKCC	GRCh37	11	94917631	94917634	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0012419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	113	617	0	ENST00000536441.1:c.887_890del	p.Glu296ValfsTer22	p.E296Vfs*22	ENST00000536441	NM_144665.3	296	gAAAGt/gt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591130	67591135	+	inframe_deletion	In_Frame_Del	DEL	AAGACG	AAGACG	-			P-0012419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	22	306	0	ENST00000274335.5:c.1724_1729del	p.Lys575_Thr576del	p.K575_T576del	ENST00000274335		575	AAGACG/-																																																																														
FYN	0	MSKCC	GRCh37	6	112020792	112020792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	113	445	1	ENST00000368678.4:c.779C>A	p.Ala260Asp	p.A260D	ENST00000368678		260	gCt/gAt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118348798	118348798	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	418	549	0	ENST00000534358.1:c.3451C>T	p.Arg1151Ter	p.R1151*	ENST00000534358	NM_005933.3	1151	Cga/Tga																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39617710	39617710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	92	645	0	ENST00000262039.4:c.1894C>T	p.Pro632Ser	p.P632S	ENST00000262039	NM_002647.2	632	Cca/Tca																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15300172	15300173	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0024911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	165	898	1	ENST00000263388.2:c.1103_1104del	p.Thr368LysfsTer21	p.T368Kfs*21	ENST00000263388	NM_000435.2	368	aCA/a																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	129	332	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	133	601	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412204	139412204	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	156	508	1	ENST00000277541.6:c.1441G>A	p.Gly481Ser	p.G481S	ENST00000277541	NM_017617.3	481	Ggc/Agc																																																																														
ETV6	0	MSKCC	GRCh37	12	12038902	12038902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	102	450	0	ENST00000396373.4:c.1195C>T	p.Arg399Cys	p.R399C	ENST00000396373	NM_001987.4	399	Cgc/Tgc																																																																														
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	82	406	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	204	445	1	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
FLT1	0	MSKCC	GRCh37	13	29005419	29005419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55687105		P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	55	398	0	ENST00000282397.4:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000282397	NM_002019.4	281	cGa/cAa																																																																														
SPEN	0	MSKCC	GRCh37	1	16263824	16263824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	63	428	0	ENST00000375759.3:c.10193G>A	p.Gly3398Glu	p.G3398E	ENST00000375759	NM_015001.2	3398	gGa/gAa																																																																														
DDR2	0	MSKCC	GRCh37	1	162745964	162745964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	77	301	0	ENST00000367921.3:c.2087C>T	p.Ser696Phe	p.S696F	ENST00000367921	NM_006182.2	696	tCt/tTt																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66679759	66679759	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	101	338	0	ENST00000307102.5:c.74C>G	p.Ser25Cys	p.S25C	ENST00000307102	NM_002755.3	25	tCt/tGt																																																																														
CDK12	0	MSKCC	GRCh37	17	37650924	37650924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	55	514	1	ENST00000447079.4:c.2396C>A	p.Ala799Glu	p.A799E	ENST00000447079	NM_015083.1	799	gCa/gAa																																																																														
APC	0	MSKCC	GRCh37	5	112176962	112176962	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	44	392	0	ENST00000257430.4:c.5671G>C	p.Glu1891Gln	p.E1891Q	ENST00000257430	NM_000038.5	1891	Gag/Cag																																																																														
KLF4	0	MSKCC	GRCh37	9	110249346	110249346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	224	632	0	ENST00000374672.4:c.1227G>C	p.Lys409Asn	p.K409N	ENST00000374672	NM_004235.4	409	aaG/aaC																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391889	139391890	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0025373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	131	534	0	ENST00000277541.6:c.6301_6302del	p.Ala2101ThrfsTer166	p.A2101Tfs*166	ENST00000277541	NM_017617.3	2101	GCa/a																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675073	40675073	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	53	680	0	ENST00000249776.8:c.37T>G	p.Phe13Val	p.F13V	ENST00000249776	NM_033286.3	13	Ttc/Gtc																																																																														
SETD2	0	MSKCC	GRCh37	3	47165024	47165024	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	48	451	1	ENST00000409792.3:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000409792	NM_014159.6	368	Cga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66766450	66766450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	15	134	0	ENST00000374690.3:c.1462C>G	p.Gln488Glu	p.Q488E	ENST00000374690	NM_000044.3	488	Cag/Gag																																																																														
GATA3	0	MSKCC	GRCh37	10	8097754	8097754	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	256	524	1	ENST00000346208.3:c.136G>T	p.Glu46Ter	p.E46*	ENST00000346208		46	Gag/Tag																																																																														
TET1	0	MSKCC	GRCh37	10	70411648	70411648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	163	535	2	ENST00000373644.4:c.4322G>T	p.Gly1441Val	p.G1441V	ENST00000373644	NM_030625.2	1441	gGg/gTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375351	118375351	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	104	376	0	ENST00000534358.1:c.8744C>G	p.Ser2915Cys	p.S2915C	ENST00000534358	NM_005933.3	2915	tCt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	143	568	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CDK8	0	MSKCC	GRCh37	13	26927985	26927985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	121	461	0	ENST00000381527.3:c.424C>G	p.Leu142Val	p.L142V	ENST00000381527	NM_001260.1	142	Ctg/Gtg																																																																														
MGA	0	MSKCC	GRCh37	15	42059422	42059422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	183	424	0	ENST00000219905.7:c.9142C>G	p.Pro3048Ala	p.P3048A	ENST00000219905	NM_001164273.1	3048	Cct/Gct																																																																														
PLCG2	0	MSKCC	GRCh37	16	81946227	81946228	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	161	479	2	ENST00000359376.3:c.1960_1961delinsTT	p.Gly654Leu	p.G654L	ENST00000359376	NM_002661.3	654	GGa/TTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	257	549	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55140707	55140707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1358	210	552	1	ENST00000257290.5:c.1568C>A	p.Ser523Tyr	p.S523Y	ENST00000257290	NM_006206.4	523	tCt/tAt																																																																														
KDR	0	MSKCC	GRCh37	4	55991444	55991444	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1326	223	584	0	ENST00000263923.4:c.17T>C	p.Leu6Pro	p.L6P	ENST00000263923	NM_002253.2	6	cTg/cCg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361258	66361258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	121	330	0	ENST00000273854.3:c.914G>T	p.Cys305Phe	p.C305F	ENST00000273854	NM_004439.5	305	tGc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1234	226	321	0				ENST00000310581	NM_198253.2																																																																																
CSF1R	0	MSKCC	GRCh37	5	149439329	149439329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	289	570	0	ENST00000286301.3:c.2066C>A	p.Pro689His	p.P689H	ENST00000286301	NM_005211.3	689	cCc/cAc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163807	32163807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	229	406	0	ENST00000375023.3:c.5419G>A	p.Ala1807Thr	p.A1807T	ENST00000375023	NM_004557.3	1807	Gct/Act																																																																														
EPHA7	0	MSKCC	GRCh37	6	93974412	93974412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	124	441	0	ENST00000369303.4:c.1642G>T	p.Val548Phe	p.V548F	ENST00000369303	NM_004440.3	548	Gtc/Ttc																																																																														
BCOR	0	MSKCC	GRCh37	X	39932732	39932732	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1579	285	652	0	ENST00000378444.4:c.1867G>T	p.Glu623Ter	p.E623*	ENST00000378444	NM_001123385.1	623	Gaa/Taa																																																																														
AMER1	0	MSKCC	GRCh37	X	63410327	63410327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1420	288	604	1	ENST00000330258.3:c.2840C>T	p.Ser947Phe	p.S947F	ENST00000330258	NM_152424.3	947	tCc/tTc																																																																														
AMER1	0	MSKCC	GRCh37	X	63411993	63411993	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025377-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	233	569	1	ENST00000330258.3:c.1174G>T	p.Glu392Ter	p.E392*	ENST00000330258	NM_152424.3	392	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	81	252	0				ENST00000310581	NM_198253.2																																																																																
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0025379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	96	454	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0025379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	121	608	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156844420	156844420	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0025379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	542	644	1	ENST00000524377.1:c.1251+2T>A		p.X417_splice	ENST00000524377	NM_002529.3	417																																																																															
SETD8	0	MSKCC	GRCh37	12	123889489	123889489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	60	168	0	ENST00000330479.4:c.716G>A	p.Gly239Asp	p.G239D	ENST00000330479	NM_020382.3	239	gGt/gAt																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134748	41134748	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	153	315	0	ENST00000379561.5:c.880A>G	p.Lys294Glu	p.K294E	ENST00000379561	NM_002015.3	294	Aaa/Gaa																																																																														
IGF1R	0	MSKCC	GRCh37	15	99250790	99250790	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	64	335	0	ENST00000268035.6:c.95-1G>A		p.X32_splice	ENST00000268035	NM_000875.3	32																																																																															
PTPRT	0	MSKCC	GRCh37	20	41400131	41400131	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	203	555	0	ENST00000373198.4:c.628A>T	p.Thr210Ser	p.T210S	ENST00000373198	NM_133170.3	210	Aca/Tca																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	75	484	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0025381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	70	514	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
ARID2	0	MSKCC	GRCh37	12	46211473	46211473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	41	329	0	ENST00000334344.6:c.439G>A	p.Gly147Arg	p.G147R	ENST00000334344	NM_152641.2	147	Ggg/Agg																																																																														
TBX3	0	MSKCC	GRCh37	12	115109949	115109949	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	50	690	0	ENST00000257566.3:c.1929C>G	p.Tyr643Ter	p.Y643*	ENST00000257566	NM_016569.3	643	taC/taG																																																																														
MGA	0	MSKCC	GRCh37	15	42019575	42019575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	46	555	0	ENST00000219905.7:c.3628C>T	p.Arg1210Trp	p.R1210W	ENST00000219905	NM_001164273.1	1210	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	10	658	0	ENST00000269305.4:c.475G>A	p.Ala159Thr	p.A159T	ENST00000269305	NM_001126112.2	159	Gcc/Acc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849053	156849053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	212	530	1	ENST00000524377.1:c.1945C>T	p.Arg649Trp	p.R649W	ENST00000524377	NM_002529.3	649	Cgg/Tgg																																																																														
GLI1	0	MSKCC	GRCh37	12	57857547	57857547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	402	406	0	ENST00000228682.2:c.73C>A	p.Gln25Lys	p.Q25K	ENST00000228682	NM_005269.2	25	Cag/Aag																																																																														
POLE	0	MSKCC	GRCh37	12	133252384	133252384	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	262	408	0	ENST00000320574.5:c.1043T>G	p.Phe348Cys	p.F348C	ENST00000320574	NM_006231.2	348	tTt/tGt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862845	9862845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	364	537	0	ENST00000330684.3:c.2458G>T	p.Val820Leu	p.V820L	ENST00000330684	NM_001134407.1	820	Gta/Tta																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	534	470	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
STK11	0	MSKCC	GRCh37	19	1207168	1207168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	473	532	0	ENST00000326873.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000326873	NM_000455.4	86	Cga/Tga																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600470	10600470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	468	494	0	ENST00000171111.5:c.1385G>A	p.Gly462Glu	p.G462E	ENST00000171111	NM_203500.1	462	gGg/gAg																																																																														
ERG	0	MSKCC	GRCh37	21	39775433	39775433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	313	359	0	ENST00000288319.7:c.587G>T	p.Arg196Ile	p.R196I	ENST00000288319	NM_182918.3	196	aGa/aTa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52676020	52676021	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	433	582	0	ENST00000394830.3:c.1036dup	p.Thr346AsnfsTer11	p.T346Nfs*11	ENST00000394830	NM_018313.4	346	aca/aAca																																																																														
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	452	414	1	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250530	26250530	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	361	502	0	ENST00000446824.2:c.304G>C	p.Val102Leu	p.V102L	ENST00000446824	NM_021018.2	102	Gtg/Ctg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509032	106509032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	277	468	0	ENST00000359195.3:c.1026C>A	p.His342Gln	p.H342Q	ENST00000359195	NM_002649.2	342	caC/caA																																																																														
BRAF	0	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	372	343	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																														
CRLF2	0	MSKCC	GRCh37	X	1317512	1317513	+	downstream_gene_variant	3'Flank	DNP	CC	CC	AA			P-0025382-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	434	584	1				ENST00000381566																																																																																	
NF2	0	MSKCC	GRCh37	22	30051667	30051667	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0025383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	40	324	0	ENST00000338641.4:c.599+2T>A		p.X200_splice	ENST00000338641	NM_000268.3	200																																																																															
NOTCH1	0	MSKCC	GRCh37	9	139410076	139410076	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	105	640	0	ENST00000277541.6:c.1762A>T	p.Thr588Ser	p.T588S	ENST00000277541	NM_017617.3	588	Acc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	74	577	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0025385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	90	438	1	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	64	394	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105570	27105571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	141	511	0	ENST00000324856.7:c.5184dupT	p.Gly1729TrpfsTer7	p.G1729Wfs*7	ENST00000324856	NM_006015.4	1727	-/T																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	56	391	0	ENST00000371953.3:c.388del	p.Arg130GlufsTer4	p.R130Efs*4	ENST00000371953	NM_000314.4	130	Cga/ga																																																																														
PTEN	0	MSKCC	GRCh37	10	89725059	89725059	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	23	212	0	ENST00000371953.3:c.1042A>C	p.Thr348Pro	p.T348P	ENST00000371953	NM_000314.4	348	Aca/Cca																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	83	519	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7579553	7579606	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAA	AGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAA	-			P-0025405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	69	559	0	ENST00000269305.4:c.97-16_134del		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
CDK12	0	MSKCC	GRCh37	17	37618743	37618743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1423	75	535	2	ENST00000447079.4:c.419C>T	p.Ser140Leu	p.S140L	ENST00000447079	NM_015083.1	140	tCg/tTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40757438	40757438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	98	581	0	ENST00000373198.4:c.2860G>C	p.Asp954His	p.D954H	ENST00000373198	NM_133170.3	954	Gat/Cat																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778244	27778244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	108	437	0	ENST00000369163.2:c.393C>G	p.Ile131Met	p.I131M	ENST00000369163	NM_003536.2	131	atC/atG																																																																														
PPP6C	0	MSKCC	GRCh37	9	127912148	127912148	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	36	388	0	ENST00000373547.4:c.722A>G	p.His241Arg	p.H241R	ENST00000373547	NM_002721.4	241	cAc/cGc																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88683357	88683357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	86	690	0	ENST00000372037.3:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000372037	NM_004329.2	494	Cga/Tga																																																																														
FGF19	0	MSKCC	GRCh37	11	69518108	69518108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	115	516	0	ENST00000294312.3:c.257C>T	p.Ala86Val	p.A86V	ENST00000294312	NM_005117.2	86	gCt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	115	619	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
RNF43	0	MSKCC	GRCh37	17	56435897	56435897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	67	363	0	ENST00000407977.2:c.1240C>T	p.Gln414Ter	p.Q414*	ENST00000407977		414	Caa/Taa																																																																														
RNF43	0	MSKCC	GRCh37	17	56437612	56437612	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	71	337	0	ENST00000407977.2:c.850G>T	p.Glu284Ter	p.E284*	ENST00000407977		284	Gag/Tag																																																																														
AURKA	0	MSKCC	GRCh37	20	54961393	54961393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	43	288	0	ENST00000312783.6:c.239A>G	p.Gln80Arg	p.Q80R	ENST00000312783	NM_198436.1	80	cAg/cGg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	52	351	0	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0025451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	325	367	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	414	519	2	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
SPEN	0	MSKCC	GRCh37	1	16258893	16258893	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs74842071		P-0025451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	77	582	1	ENST00000375759.3:c.6158A>C	p.Asn2053Thr	p.N2053T	ENST00000375759	NM_015001.2	2053	aAc/aCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	76	467	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	78	497	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44918491	44918491	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	30	143	0	ENST00000377967.4:c.975-1G>A		p.X325_splice	ENST00000377967	NM_021140.2	325																																																																															
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	288	537	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19260064	19260064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	376	684	0	ENST00000162023.5:c.229G>A	p.Glu77Lys	p.E77K	ENST00000162023		77	Gag/Aag																																																																														
H3F3A	0	MSKCC	GRCh37	1	226252084	226252084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	78	132	0	ENST00000366813.1:c.32C>T	p.Ser11Leu	p.S11L	ENST00000366813		11	tCg/tTg																																																																														
POLE	0	MSKCC	GRCh37	12	133248830	133248830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	151	528	0	ENST00000320574.5:c.1765C>G	p.Pro589Ala	p.P589A	ENST00000320574	NM_006231.2	589	Cct/Gct																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911905	32911905	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	290	468	0	ENST00000380152.3:c.3413del	p.Gln1138ArgfsTer12	p.Q1138Rfs*12	ENST00000380152		1138	cAg/cg																																																																														
IDH2	0	MSKCC	GRCh37	15	90645529	90645529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	14	72	0	ENST00000330062.3:c.94C>G	p.Gln32Glu	p.Q32E	ENST00000330062	NM_002168.2	32	Caa/Gaa																																																																														
TSC2	0	MSKCC	GRCh37	16	2129665	2129665	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	114	617	0	ENST00000219476.3:c.3392T>G	p.Met1131Arg	p.M1131R	ENST00000219476	NM_000548.3	1131	aTg/aGg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2207665	2207665	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	261	529	0	ENST00000398665.3:c.949A>G	p.Ile317Val	p.I317V	ENST00000398665	NM_032482.2	317	Atc/Gtc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143159126	143159150	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGAAATCTATATAATTTACATAC	TGGGAAATCTATATAATTTACATAC	-			P-0025454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	105	366	0	ENST00000262992.4:c.703_727del	p.Val235HisfsTer26	p.V235Hfs*26	ENST00000262992	NM_001101669.1	235	GTATGTAAATTATATAGATTTCCCAca/ca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465532	8465532	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	187	571	0	ENST00000356435.5:c.3648C>A	p.Asn1216Lys	p.N1216K	ENST00000356435		1216	aaC/aaA																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934519	9934519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	87	361	0	ENST00000330684.3:c.1636C>T	p.Pro546Ser	p.P546S	ENST00000330684	NM_001134407.1	546	Cct/Tct																																																																														
CDH1	0	MSKCC	GRCh37	16	68857361	68857361	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	163	506	0	ENST00000261769.5:c.1996A>T	p.Asn666Tyr	p.N666Y	ENST00000261769	NM_004360.3	666	Aat/Tat																																																																														
RNF43	0	MSKCC	GRCh37	17	56437567	56437567	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	101	491	0	ENST00000407977.2:c.895del	p.Val299TrpfsTer120	p.V299Wfs*120	ENST00000407977		299	Gtg/tg																																																																														
KLF4	0	MSKCC	GRCh37	9	110248157	110248157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	163	437	0	ENST00000374672.4:c.1315C>G	p.Arg439Gly	p.R439G	ENST00000374672	NM_004235.4	439	Cgc/Ggc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99162496	99162496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	86	334	0	ENST00000074304.5:c.1014G>C	p.Leu338Phe	p.L338F	ENST00000074304	NM_001134224.1	338	ttG/ttC																																																																														
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0025458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	108	496	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	77	337	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
DICER1	0	MSKCC	GRCh37	14	95560401	95560401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	170	417	0	ENST00000343455.3:c.5188G>A	p.Gly1730Arg	p.G1730R	ENST00000343455	NM_177438.2	1730	Ggg/Agg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0025460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	71	510	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0025460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	132	562	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952117	178952117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	44	335	0	ENST00000263967.3:c.3172A>C	p.Ile1058Leu	p.I1058L	ENST00000263967	NM_006218.2	1058	Atc/Ctc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14021910	14021910	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	51	511	0	ENST00000311895.7:c.610T>G	p.Leu204Val	p.L204V	ENST00000311895	NM_005236.2	204	Tta/Gta																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66518915	66518915	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	29	361	0	ENST00000358598.2:c.196C>G	p.Gln66Glu	p.Q66E	ENST00000358598	NM_212471.2	66	Cag/Gag																																																																														
EPAS1	0	MSKCC	GRCh37	2	46611718	46611719	+	stop_gained	Nonsense_Mutation	DNP	TG	TG	AT			P-0025467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	38	640	0	ENST00000263734.3:c.2532_2533delinsAT	p.Cys844_Glu845delinsTer	p.C844_E845delins*	ENST00000263734	NM_001430.4	844	tgTGag/tgATag																																																																														
IKZF1	0	MSKCC	GRCh37	7	50455091	50455091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	110	371	0	ENST00000331340.3:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000331340	NM_006060.4	213	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	200	735	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112175756	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	42	349	0	ENST00000257430.4:c.4466del	p.Leu1489TyrfsTer18	p.L1489Yfs*18	ENST00000257430	NM_000038.5	1489	Tta/ta																																																																														
KMT2A	0	MSKCC	GRCh37	11	118379850	118379850	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	58	236	0	ENST00000534358.1:c.10836-1G>C		p.X3612_splice	ENST00000534358	NM_005933.3	3612																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	152	704	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	84	446	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	162	543	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																														
APC	0	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	36	264	1	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																																																														
ROS1	0	MSKCC	GRCh37	6	117730805	117730805	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	182	480	0	ENST00000368508.3:c.229C>T	p.Arg77Trp	p.R77W	ENST00000368508	NM_002944.2	77	Cgg/Tgg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214133	36214134	+	missense_variant	Missense_Mutation	DNP	AA	AA	GG			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	67	744	1	ENST00000222270.7:c.2959_2960delinsGG	p.Lys987Gly	p.K987G	ENST00000222270	NM_014727.1	987	AAg/GGg																																																																														
EP300	0	MSKCC	GRCh37	22	41572351	41572351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	311	622	1	ENST00000263253.7:c.4880G>A	p.Arg1627Gln	p.R1627Q	ENST00000263253	NM_001429.3	1627	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112175350	112175350	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	56	260	0	ENST00000257430.4:c.4059A>T	p.Glu1353Asp	p.E1353D	ENST00000257430	NM_000038.5	1353	gaA/gaT																																																																														
EPHA7	0	MSKCC	GRCh37	6	93974336	93974336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	121	526	0	ENST00000369303.4:c.1718T>C	p.Val573Ala	p.V573A	ENST00000369303	NM_004440.3	573	gTc/gCc																																																																														
SMO	0	MSKCC	GRCh37	7	128843413	128843413	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	49	378	0	ENST00000249373.3:c.520T>G	p.Phe174Val	p.F174V	ENST00000249373	NM_005631.4	174	Ttc/Gtc																																																																														
AGO2	0	MSKCC	GRCh37	8	141551318	141551318	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	105	768	0	ENST00000220592.5:c.1979A>T	p.Lys660Met	p.K660M	ENST00000220592	NM_012154.3	660	aAg/aTg																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20148663	20148663	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	170	618	0	ENST00000379607.5:c.400A>G	p.Ile134Val	p.I134V	ENST00000379607	NM_001412.3	134	Att/Gtt																																																																														
BCOR	0	MSKCC	GRCh37	X	39914651	39914651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	187	552	0	ENST00000378444.4:c.4711del	p.His1571ThrfsTer9	p.H1571Tfs*9	ENST00000378444	NM_001123385.1	1571	Cac/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0025471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	196	542	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52724361	52724361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	97	390	1	ENST00000322088.6:c.1493G>A	p.Arg498His	p.R498H	ENST00000322088	NM_014225.5	498	cGc/cAc																																																																														
SUFU	0	MSKCC	GRCh37	10	104264013	104264013	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	117	405	0	ENST00000369902.3:c.104A>G	p.His35Arg	p.H35R	ENST00000369902	NM_016169.3	35	cAc/cGc																																																																														
POLD1	0	MSKCC	GRCh37	19	50920487	50920487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	308	484	1	ENST00000440232.2:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000440232	NM_002691.3	1060	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	102	522	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	107	442	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	124	389	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0025472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	32	248	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0025472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	66	284	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PTCH1	0	MSKCC	GRCh37	9	98224163	98224163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138154222		P-0025472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	44	223	0	ENST00000331920.6:c.2678G>A	p.Arg893His	p.R893H	ENST00000331920	NM_000264.3	893	cGc/cAc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920450	114920450	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	86	345	0	ENST00000543371.1:c.1391G>A	p.Arg464Lys	p.R464K	ENST00000543371	NM_001198531.1	464	aGg/aAg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88679258	88679258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	55	534	0	ENST00000360948.2:c.779G>T	p.Trp260Leu	p.W260L	ENST00000360948	NM_001012338.2	260	tGg/tTg																																																																														
MED12	0	MSKCC	GRCh37	X	70339245	70339245	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	205	212	0	ENST00000374080.3:c.122T>A	p.Val41Glu	p.V41E	ENST00000374080		41	gTa/gAa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	56	458	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																														
DNMT1	0	MSKCC	GRCh37	19	10291041	10291041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	100	413	0	ENST00000340748.4:c.430G>A	p.Asp144Asn	p.D144N	ENST00000340748		144	Gat/Aat																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508733	106508733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	148	487	0	ENST00000359195.3:c.727G>A	p.Ala243Thr	p.A243T	ENST00000359195	NM_002649.2	243	Gcc/Acc																																																																														
GPS2	0	MSKCC	GRCh37	17	7216439	7216439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	34	531	0	ENST00000380728.2:c.809C>G	p.Ser270Cys	p.S270C	ENST00000380728		270	tCt/tGt																																																																														
CSDE1	0	MSKCC	GRCh37	1	115280663	115280663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	113	628	0	ENST00000438362.2:c.368G>A	p.Arg123Gln	p.R123Q	ENST00000438362	NM_001242891.1	123	cGa/cAa																																																																														
SUFU	0	MSKCC	GRCh37	10	104309863	104309863	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	131	279	0	ENST00000369902.3:c.454G>A	p.Glu152Lys	p.E152K	ENST00000369902	NM_016169.3	152	Gag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187557161	187557183	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGAGGGGGAATGCTTACCAGTG	ATGAGGGGGAATGCTTACCAGTG	-			P-0025484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	66	287	0	ENST00000441802.2:c.4179_4183+18del		p.X1393_splice	ENST00000441802	NM_005245.3	1393																																																																															
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	50	573	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	47	663	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0025487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	46	606	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098803	178098803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	104	796	1	ENST00000397062.3:c.242G>A	p.Gly81Asp	p.G81D	ENST00000397062	NM_006164.4	81	gGt/gAt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589599	67589601	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0025487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	35	395	0	ENST00000274335.5:c.1362_1364del	p.Gln455del	p.Q455del	ENST00000274335		454	acTCAg/acg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092710	27092710	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0025487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	25	369	0	ENST00000324856.7:c.2733-2A>G		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																															
ARID1A	0	MSKCC	GRCh37	1	27106289	27106290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	57	688	0	ENST00000324856.7:c.5901dup	p.Cys1968ValfsTer31	p.C1968Vfs*31	ENST00000324856	NM_006015.4	1967	ctg/ctGg																																																																														
CTCF	0	MSKCC	GRCh37	16	67660532	67660532	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	47	608	0	ENST00000264010.4:c.1432G>T	p.Glu478Ter	p.E478*	ENST00000264010	NM_006565.3	478	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	27	554	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49430837	49431424	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCCTCAGTGCCCATTTAGGGATAACAATAATCACCCTGAGTAACTTGGCTATGTTACCAGCTGAGGTTACCTGTATCTGGGAAGAAGCTGTTTGCCAGCTGCTGCTGCATTGCCAATTGCTGCGGCTTCATGCACATGGAAGGTGGCATGGTGCCCATGGGCTTCTGTGATAGCACTGGCTGTGAGCTCTGCTGGGGTACCAAGCCTGCCTGCCCTCCATGCTGCCCACTTAGCATATGCCCTTGATTGGACACCATAGCCATGGATGGAGCCAGGCGTTGCTGGAGGGCATGAGCTGGTGGCTGGGTGGGCATCAGTGGCTGGGGCAAACCTGGCTGTCGGGCACCTGCAAGACCCAGGGAAAGCTGCTGTTGGGACCCAGCCAAACTGGGAGAAGAGCCCTCATGTGGCAAAGACATGGCCTGGGCAGGGCCTGGTGCAGACAGTAGGGAATGCTGCTGCTGCTGTTGCTGCTGCTGCTGGGCAGGCTGCAACTGTGCTGAAAGCTGCTGCTTCTTCTGCAGCTCCTTCTTCTCATGCTCCAACAGGTCCTCAATGAGCAGGGGTAACTCGCTGGCTACCAGTGA	AGCCTCAGTGCCCATTTAGGGATAACAATAATCACCCTGAGTAACTTGGCTATGTTACCAGCTGAGGTTACCTGTATCTGGGAAGAAGCTGTTTGCCAGCTGCTGCTGCATTGCCAATTGCTGCGGCTTCATGCACATGGAAGGTGGCATGGTGCCCATGGGCTTCTGTGATAGCACTGGCTGTGAGCTCTGCTGGGGTACCAAGCCTGCCTGCCCTCCATGCTGCCCACTTAGCATATGCCCTTGATTGGACACCATAGCCATGGATGGAGCCAGGCGTTGCTGGAGGGCATGAGCTGGTGGCTGGGTGGGCATCAGTGGCTGGGGCAAACCTGGCTGTCGGGCACCTGCAAGACCCAGGGAAAGCTGCTGTTGGGACCCAGCCAAACTGGGAGAAGAGCCCTCATGTGGCAAAGACATGGCCTGGGCAGGGCCTGGTGCAGACAGTAGGGAATGCTGCTGCTGCTGTTGCTGCTGCTGCTGGGCAGGCTGCAACTGTGCTGAAAGCTGCTGCTTCTTCTGCAGCTCCTTCTTCTCATGCTCCAACAGGTCCTCAATGAGCAGGGGTAACTCGCTGGCTACCAGTGA	-			P-0025492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	26	96	2	ENST00000301067.7:c.9715_10231+71del		p.X3239_splice	ENST00000301067	NM_003482.3	3239																																																																															
ERCC5	0	MSKCC	GRCh37	13	103518055	103518075	+	inframe_deletion	In_Frame_Del	DEL	GAACTTCAAGCAGAATTCCCT	GAACTTCAAGCAGAATTCCCT	-			P-0025492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	142	307	0	ENST00000355739.4:c.1996_2016del	p.Leu666_Glu672del	p.L666_E672del	ENST00000355739	NM_000123.3	665	GAACTTCAAGCAGAATTCCCT/-																																																																														
TP53	0	MSKCC	GRCh37	17	7577115	7577115	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	353	641	0	ENST00000269305.4:c.823delT	p.Cys275ValfsTer70	p.C275Vfs*70	ENST00000269305	NM_001126112.2	275	Tgt/gt																																																																														
ALK	0	MSKCC	GRCh37	2	30143370	30143370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	138	399	0	ENST00000389048.3:c.156G>T	p.Lys52Asn	p.K52N	ENST00000389048	NM_004304.4	52	aaG/aaT																																																																														
IL7R	0	MSKCC	GRCh37	5	35876231	35876251	+	inframe_deletion	In_Frame_Del	DEL	AGGGGATGTGCAGAGCCCCAA	AGGGGATGTGCAGAGCCCCAA	-			P-0025492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	75	505	0	ENST00000303115.3:c.1023_1043del	p.Gly342_Asn348del	p.G342_N348del	ENST00000303115	NM_002185.3	341	ggAGGGGATGTGCAGAGCCCCAAc/ggc																																																																														
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	106	488	0	ENST00000361445.4:c.5930C>G	p.Thr1977Arg	p.T1977R	ENST00000361445	NM_004958.3	1977	aCa/aGa																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324201	31324201	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1071652		P-0025493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	14	264	10	ENST00000412585.2:c.362G>A	p.Ser121Asn	p.S121N	ENST00000412585	NM_005514.6	121	aGc/aAc																																																																														
MEN1	0	MSKCC	GRCh37	11	64575476	64575480	+	frameshift_variant	Frame_Shift_Del	DEL	GATCC	GATCC	-			P-0025493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	419	650	0	ENST00000337652.1:c.552_556del	p.Asp185CysfsTer14	p.D185Cfs*14	ENST00000337652	NM_130803.2	184	gaGGATCat/gaat																																																																														
EP300	0	MSKCC	GRCh37	22	41542815	41542815	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	72	488	0	ENST00000263253.7:c.2126A>G	p.Gln709Arg	p.Q709R	ENST00000263253	NM_001429.3	709	cAa/cGa																																																																														
ATRX	0	MSKCC	GRCh37	X	76814225	76814225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	161	474	0	ENST00000373344.5:c.6419A>G	p.Asn2140Ser	p.N2140S	ENST00000373344	NM_000489.3	2140	aAt/aGt																																																																														
SPEN	0	MSKCC	GRCh37	1	16255225	16255227	+	frameshift_variant	Frame_Shift_Del	DEL	CCC	CCC	A			P-0025493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	85	380	1	ENST00000375759.3:c.2490_2492delinsA	p.Pro831Ter	p.P831*	ENST00000375759	NM_015001.2	830	tcCCCt/tcAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	280	651	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
MET	0	MSKCC	GRCh37	7	116395570	116395570	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	44	472	1	ENST00000397752.3:c.1862+1G>A		p.X621_splice	ENST00000397752	NM_000245.2	621																																																																															
CDKN1B	0	MSKCC	GRCh37	12	12871094	12871094	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	57	298	0	ENST00000228872.4:c.322del	p.Asp108MetfsTer11	p.D108Mfs*11	ENST00000228872	NM_004064.3	107	caG/ca																																																																														
RTEL1	0	MSKCC	GRCh37	20	62320877	62320877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	99	873	0	ENST00000508582.2:c.1973C>T	p.Ser658Leu	p.S658L	ENST00000508582		658	tCa/tTa																																																																														
TBX3	0	MSKCC	GRCh37	12	115117375	115117381	+	frameshift_variant	Frame_Shift_Del	DEL	TACTATA	TACTATA	-			P-0025503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	97	495	0	ENST00000257566.3:c.793_799del	p.Tyr265HisfsTer15	p.Y265Hfs*15	ENST00000257566	NM_016569.3	265	TATAGTAca/ca																																																																														
EP300	0	MSKCC	GRCh37	22	41533773	41533773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	29	467	0	ENST00000263253.7:c.1739G>A	p.Arg580Gln	p.R580Q	ENST00000263253	NM_001429.3	580	cGa/cAa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390732	139390732	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	121	531	0	ENST00000277541.6:c.7459C>T	p.Gln2487Ter	p.Q2487*	ENST00000277541	NM_017617.3	2487	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	122	621	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	51	200	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	174	842	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258992	153258992	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	71	401	0	ENST00000281708.4:c.823del	p.Gln275SerfsTer67	p.Q275Sfs*67	ENST00000281708	NM_033632.3	275	Cag/ag																																																																														
ERCC3	0	MSKCC	GRCh37	2	128036890	128036890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	95	649	2	ENST00000285398.2:c.1589G>A	p.Arg530Gln	p.R530Q	ENST00000285398	NM_000122.1	530	cGa/cAa																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67197011	67197011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	58	401	0	ENST00000312629.5:c.254G>A	p.Arg85Gln	p.R85Q	ENST00000312629	NM_003952.2	85	cGa/cAa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71945583	71945583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	60	634	0	ENST00000298229.2:c.2339G>A	p.Ser780Asn	p.S780N	ENST00000298229	NM_001567.3	780	aGc/aAc																																																																														
TSC2	0	MSKCC	GRCh37	16	2134626	2134632	+	frameshift_variant	Frame_Shift_Del	DEL	CATCACG	CATCACG	-			P-0025510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	65	708	0	ENST00000219476.3:c.4405_4411del	p.Ser1469GlyfsTer5	p.S1469Gfs*5	ENST00000219476	NM_000548.3	1468	cCATCACGc/cc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794947	242794947	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	113	792	0	ENST00000334409.5:c.262C>T	p.Gln88Ter	p.Q88*	ENST00000334409	NM_005018.2	88	Cag/Tag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258996	153258996	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	73	393	0	ENST00000281708.4:c.819A>T	p.Glu273Asp	p.E273D	ENST00000281708	NM_033632.3	273	gaA/gaT																																																																														
NSD1	0	MSKCC	GRCh37	5	176687031	176687031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025510-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	127	498	0	ENST00000439151.2:c.5008G>A	p.Ala1670Thr	p.A1670T	ENST00000439151	NM_022455.4	1670	Gcc/Acc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0025531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	202	401	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55242470	55242470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	198	364	2	ENST00000275493.2:c.2240T>C	p.Leu747Ser	p.L747S	ENST00000275493	NM_005228.3	747	tTa/tCa																																																																														
DDR2	0	MSKCC	GRCh37	1	162745624	162745624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	108	350	3	ENST00000367921.3:c.2039G>A	p.Arg680His	p.R680H	ENST00000367921	NM_006182.2	680	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	187	649	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	152	571	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
RB1	0	MSKCC	GRCh37	13	48941668	48941669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	65	378	0	ENST00000267163.4:c.983dup	p.Asn328LysfsTer2	p.N328Kfs*2	ENST00000267163	NM_000321.2	326	-/A																																																																														
FUBP1	0	MSKCC	GRCh37	1	78444666	78444666	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	55	381	0	ENST00000370768.2:c.23del	p.Pro8LeufsTer46	p.P8Lfs*46	ENST00000370768	NM_003902.3	8	cCt/ct																																																																														
PTEN	0	MSKCC	GRCh37	10	89720717	89720717	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	15	111	0	ENST00000371953.3:c.868del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	290	Gta/ta																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426578	49426592	+	inframe_deletion	In_Frame_Del	DEL	CTGCTGCTGTTGAAA	CTGCTGCTGTTGAAA	-			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	109	564	0	ENST00000301067.7:c.11896_11910del	p.Phe3966_Gln3970del	p.F3966_Q3970del	ENST00000301067	NM_003482.3	3966	TTTCAACAGCAGCAG/-																																																																														
GLI1	0	MSKCC	GRCh37	12	57865120	57865120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	122	757	1	ENST00000228682.2:c.2597C>A	p.Thr866Asn	p.T866N	ENST00000228682	NM_005269.2	866	aCc/aAc																																																																														
GSK3B	0	MSKCC	GRCh37	3	119631604	119631604	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	55	420	0	ENST00000316626.5:c.662A>T	p.Tyr221Phe	p.Y221F	ENST00000316626		221	tAc/tTc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56176940	56176940	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	48	436	0	ENST00000399503.3:c.2210T>A	p.Val737Asp	p.V737D	ENST00000399503	NM_005921.1	737	gTc/gAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465563	8465563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	105	643	0	ENST00000356435.5:c.3617G>T	p.Gly1206Val	p.G1206V	ENST00000356435		1206	gGg/gTg																																																																														
STAG2	0	MSKCC	GRCh37	X	123197720	123197720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	54	460	0	ENST00000218089.9:c.1844A>G	p.Gln615Arg	p.Q615R	ENST00000218089	NM_001042749.1	615	cAg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	38	542	1	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	54	514	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca																																																																														
HGF	0	MSKCC	GRCh37	7	81339524	81339524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	71	528	0	ENST00000222390.5:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000222390	NM_000601.4	494	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	208	631	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	79	456	0	ENST00000342988.3:c.1064A>G	p.Asp355Gly	p.D355G	ENST00000342988	NM_005359.5	355	gAc/gGc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149512490	149512490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	45	390	0	ENST00000261799.4:c.950G>A	p.Arg317Gln	p.R317Q	ENST00000261799	NM_002609.3	317	cGg/cAg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830519	72830521	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	77	517	0	ENST00000268489.5:c.6060_6062del	p.Gln2021del	p.Q2021del	ENST00000268489	NM_006885.3	2020	aaACAg/aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577546	7577557	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCCATGCA	GCCGCCCATGCA	-			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	83	549	0	ENST00000269305.4:c.724_735del	p.Cys242_Gly245del	p.C242_G245del	ENST00000269305	NM_001126112.2	242	TGCATGGGCGGC/-																																																																														
RNF43	0	MSKCC	GRCh37	17	56436002	56436002	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	41	317	0	ENST00000407977.2:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000407977		379	Cag/Tag																																																																														
FLT4	0	MSKCC	GRCh37	5	180048637	180048637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	67	476	0	ENST00000261937.6:c.1925G>A	p.Arg642His	p.R642H	ENST00000261937	NM_182925.4	642	cGc/cAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39933416	39933416	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	79	280	0	ENST00000378444.4:c.1183A>T	p.Lys395Ter	p.K395*	ENST00000378444	NM_001123385.1	395	Aag/Tag																																																																														
BRAF	0	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	182	428	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt																																																																														
INHBA	0	MSKCC	GRCh37	7	41730008	41730008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	194	476	1	ENST00000242208.4:c.521G>A	p.Arg174His	p.R174H	ENST00000242208	NM_002192.2	174	cGc/cAc																																																																														
STK11	0	MSKCC	GRCh37	19	1220506	1220506	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	143	385	1	ENST00000326873.7:c.597+2T>A		p.X199_splice	ENST00000326873	NM_000455.4	199																																																																															
UPF1	0	MSKCC	GRCh37	19	18967828	18967828	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	202	567	0	ENST00000262803.5:c.1967A>G	p.Gln656Arg	p.Q656R	ENST00000262803	NM_002911.3	656	cAg/cGg																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792521	33792521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	78	156	0	ENST00000498907.2:c.800G>T	p.Gly267Val	p.G267V	ENST00000498907	NM_004364.3	267	gGc/gTc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467441	25467441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	178	483	0	ENST00000264709.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000264709	NM_175629.2	545	gaG/gaT																																																																														
DROSHA	0	MSKCC	GRCh37	5	31431743	31431743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	178	417	0	ENST00000344624.3:c.3085G>A	p.Asp1029Asn	p.D1029N	ENST00000344624		1029	Gac/Aac																																																																														
HGF	0	MSKCC	GRCh37	7	81386596	81386596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	201	458	1	ENST00000222390.5:c.391G>T	p.Gly131Cys	p.G131C	ENST00000222390	NM_000601.4	131	Ggt/Tgt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528625	8528625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	128	399	0	ENST00000356435.5:c.507C>A	p.Ser169Arg	p.S169R	ENST00000356435		169	agC/agA																																																																														
RBM10	0	MSKCC	GRCh37	X	47044473	47044473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	146	225	1	ENST00000329236.7:c.1736G>A	p.Arg579His	p.R579H	ENST00000329236	NM_001204466.1	579	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0025550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	365	652	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PTEN	0	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0025550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	83	260	0	ENST00000371953.3:c.1027-1G>T		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
CTCF	0	MSKCC	GRCh37	16	67645309	67645309	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	114	444	0	ENST00000264010.4:c.574C>G	p.Gln192Glu	p.Q192E	ENST00000264010	NM_006565.3	192	Caa/Gaa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15960859	15960859	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	129	308	0	ENST00000268712.3:c.6361C>G	p.Pro2121Ala	p.P2121A	ENST00000268712	NM_006311.3	2121	Cca/Gca																																																																														
FOXP1	0	MSKCC	GRCh37	3	71050178	71050178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	86	497	0	ENST00000318789.4:c.1007G>C	p.Arg336Thr	p.R336T	ENST00000318789	NM_032682.5	336	aGa/aCa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0025553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	18	556	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	326	444	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0025555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	384	541	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
EGFR	0	MSKCC	GRCh37	7	55233009	55233009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	340	518	0	ENST00000275493.2:c.1759G>A	p.Asp587Asn	p.D587N	ENST00000275493	NM_005228.3	587	Gac/Aac																																																																														
MTOR	0	MSKCC	GRCh37	1	11188177	11188177	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	334	488	1	ENST00000361445.4:c.5917A>T	p.Ile1973Phe	p.I1973F	ENST00000361445	NM_004958.3	1973	Atc/Ttc																																																																														
SPEN	0	MSKCC	GRCh37	1	16259511	16259511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	75	462	0	ENST00000375759.3:c.6776C>G	p.Ser2259Cys	p.S2259C	ENST00000375759	NM_015001.2	2259	tCt/tGt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11118656	11118656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	162	654	0	ENST00000344626.4:c.2080G>A	p.Asp694Asn	p.D694N	ENST00000344626	NM_003072.3	694	Gac/Aac																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14629119	14629119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	80	427	1	ENST00000254322.2:c.43G>T	p.Ala15Ser	p.A15S	ENST00000254322	NM_006145.1	15	Gcg/Tcg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252861	36252862	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	313	420	0	ENST00000300305.3:c.500dup	p.Ser167ArgfsTer46	p.S167Rfs*46	ENST00000300305		167	agt/agGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878871	151878871	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	411	627	0	ENST00000262189.6:c.6074C>G	p.Ser2025Ter	p.S2025*	ENST00000262189	NM_170606.2	2025	tCa/tGa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	73	733	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
SOX9	0	MSKCC	GRCh37	17	70119069	70119069	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	90	512	0	ENST00000245479.2:c.642del	p.Ser215ProfsTer4	p.S215Pfs*4	ENST00000245479	NM_000346.3	214	tCc/tc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420314	88420314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	31	531	2	ENST00000360948.2:c.2372G>A	p.Arg791Gln	p.R791Q	ENST00000360948	NM_001012338.2	791	cGg/cAg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713759	30713759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	37	561	0	ENST00000359013.4:c.1159C>T	p.His387Tyr	p.H387Y	ENST00000359013	NM_001024847.2	387	Cac/Tac																																																																														
ELF3	0	MSKCC	GRCh37	1	201983019	201983019	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149307595		P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	83	770	2	ENST00000359651.3:c.868G>A	p.Glu290Lys	p.E290K	ENST00000359651		290	Gag/Aag																																																																														
ALK	0	MSKCC	GRCh37	2	29446386	29446386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	77	798	2	ENST00000389048.3:c.3181C>T	p.Arg1061Trp	p.R1061W	ENST00000389048	NM_004304.4	1061	Cgg/Tgg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41274859	41274859	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	48	666	0	ENST00000349496.5:c.1109T>G	p.Leu370Arg	p.L370R	ENST00000349496	NM_001904.3	370	cTg/cGg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	171	362	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	280	601	0	ENST00000358487.5:c.1647T>G	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaG																																																																														
PTEN	0	MSKCC	GRCh37	10	89692887	89692887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	242	364	0	ENST00000371953.3:c.371G>A	p.Cys124Tyr	p.C124Y	ENST00000371953	NM_000314.4	124	tGt/tAt																																																																														
ATM	0	MSKCC	GRCh37	11	108178641	108178641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	121	370	2	ENST00000278616.4:c.5692C>T	p.Arg1898Ter	p.R1898*	ENST00000278616	NM_000051.3	1898	Cga/Tga																																																																														
PGR	0	MSKCC	GRCh37	11	100920786	100920786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	114	489	0	ENST00000325455.5:c.2362C>T	p.Arg788Trp	p.R788W	ENST00000325455	NM_001202474.3	788	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435941	49435941	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	401	705	0	ENST00000301067.7:c.6040C>T	p.Gln2014Ter	p.Q2014*	ENST00000301067	NM_003482.3	2014	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7579882	7579882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	370	642	0	ENST00000269305.4:c.31G>A	p.Glu11Lys	p.E11K	ENST00000269305	NM_001126112.2	11	Gag/Aag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211882	36211882	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	399	828	1	ENST00000222270.7:c.1633C>T	p.Arg545Ter	p.R545*	ENST00000222270	NM_014727.1	545	Cga/Tga																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022290	31022290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	246	454	0	ENST00000375687.4:c.1775del	p.Gln592ArgfsTer111	p.Q592Rfs*111	ENST00000375687	NM_015338.5	592	cAg/cg																																																																														
MYD88	0	MSKCC	GRCh37	3	38182004	38182004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	299	513	1	ENST00000396334.3:c.628G>A	p.Asp210Asn	p.D210N	ENST00000396334	NM_002468.4	210	Gat/Aat																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225422	26225422	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201329172		P-0025564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	177	226	0	ENST00000360408.1:c.40G>A	p.Gly14Ser	p.G14S	ENST00000360408	NM_003532.2	14	Ggt/Agt																																																																														
TSC1	0	MSKCC	GRCh37	9	135786477	135786477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	117	553	0	ENST00000298552.3:c.1053G>T	p.Met351Ile	p.M351I	ENST00000298552	NM_001162426.1	351	atG/atT																																																																														
TSC1	0	MSKCC	GRCh37	9	135786476	135786477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0025564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	117	553	0	ENST00000298552.3:c.1053_1054insTA	p.Val352Ter	p.V352*	ENST00000298552	NM_001162426.1	351	-/TA																																																																														
EGFR	0	MSKCC	GRCh37	7	55242442	55242443	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTAAAATTCCCGTCGCTA			P-0025566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	183	555	0	ENST00000275493.2:c.2214_2231dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	gtt/gTTAAAATTCCCGTCGCTAtt																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88649957	88649957	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	222	637	0	ENST00000372037.3:c.206A>G	p.Asp69Gly	p.D69G	ENST00000372037	NM_004329.2	69	gAt/gGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	69	654	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	60	310	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																																																														
RAD52	0	MSKCC	GRCh37	12	1025510	1025510	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	63	405	0	ENST00000358495.3:c.865G>A	p.Ala289Thr	p.A289T	ENST00000358495	NM_134424.2	289	Gca/Aca																																																																														
MGA	0	MSKCC	GRCh37	15	41961363	41961363	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	95	461	0	ENST00000219905.7:c.271C>T	p.Arg91Ter	p.R91*	ENST00000219905	NM_001164273.1	91	Cga/Tga																																																																														
DDR2	0	MSKCC	GRCh37	1	162731107	162731107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	148	540	0	ENST00000367921.3:c.962C>A	p.Pro321His	p.P321H	ENST00000367921	NM_006182.2	321	cCc/cAc																																																																														
POLE	0	MSKCC	GRCh37	12	133226032	133226032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	57	485	0	ENST00000320574.5:c.3865C>A	p.Arg1289Ser	p.R1289S	ENST00000320574	NM_006231.2	1289	Cgc/Agc																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987179	36987193	+	inframe_deletion	In_Frame_Del	DEL	CATGCCGCTCATGTT	CATGCCGCTCATGTT	-			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	39	408	0	ENST00000354822.5:c.496_510del	p.Asn166_Met170del	p.N166_M170del	ENST00000354822	NM_001079668.2	166	AACATGAGCGGCATG/-																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43700188	43700188	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	88	456	0	ENST00000382044.4:c.5699del	p.Gly1900ValfsTer6	p.G1900Vfs*6	ENST00000382044	NM_001141980.1	1900	gGt/gt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713554	30713555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	110	418	0	ENST00000359013.4:c.956dup	p.Ser320LeufsTer8	p.S320Lfs*8	ENST00000359013	NM_001024847.2	318	-/T																																																																														
FAT1	0	MSKCC	GRCh37	4	187541970	187541970	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs189271562		P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	84	495	1	ENST00000441802.2:c.5770G>A	p.Gly1924Arg	p.G1924R	ENST00000441802	NM_005245.3	1924	Ggg/Agg																																																																														
RBM10	0	MSKCC	GRCh37	X	47039321	47039321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	88	533	0	ENST00000329236.7:c.713C>T	p.Ser238Phe	p.S238F	ENST00000329236	NM_001204466.1	238	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	281	677	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	42	285	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	42	285	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
STK11	0	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	58	380	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																																																														
ALK	0	MSKCC	GRCh37	2	29455230	29455230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	64	531	0	ENST00000389048.3:c.2572C>A	p.Pro858Thr	p.P858T	ENST00000389048	NM_004304.4	858	Cca/Aca																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499327	89499327	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	57	416	0	ENST00000336596.2:c.2497G>T	p.Val833Leu	p.V833L	ENST00000336596	NM_005233.5	833	Gta/Tta																																																																														
EPHA7	0	MSKCC	GRCh37	6	94124447	94124447	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	68	649	0	ENST00000369303.4:c.136G>T	p.Glu46Ter	p.E46*	ENST00000369303	NM_004440.3	46	Gag/Tag																																																																														
BCOR	0	MSKCC	GRCh37	X	39935750	39935750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	64	563	0	ENST00000378444.4:c.122C>A	p.Ala41Asp	p.A41D	ENST00000378444	NM_001123385.1	41	gCc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	49	682	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0025570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	51	667	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971176	21971177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	37	462	0	ENST00000304494.5:c.181dup	p.Glu61GlyfsTer59	p.E61Gfs*59	ENST00000304494	NM_000077.4	61	gag/gGag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971176	21971177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	37	462	0	ENST00000304494.5:c.181dup	p.Glu61GlyfsTer59	p.E61Gfs*59	ENST00000304494	NM_000077.4	61	gag/gGag																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971176	21971177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	37	462	0	ENST00000304494.5:c.181dup	p.Glu61GlyfsTer59	p.E61Gfs*59	ENST00000304494	NM_000077.4	61	gag/gGag																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	235	588	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	79	470	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TBX3	0	MSKCC	GRCh37	12	115117330	115117330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	102	500	0	ENST00000257566.3:c.844A>G	p.Thr282Ala	p.T282A	ENST00000257566	NM_016569.3	282	Act/Gct																																																																														
MED12	0	MSKCC	GRCh37	X	70346281	70346281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	123	610	0	ENST00000374080.3:c.2632G>T	p.Asp878Tyr	p.D878Y	ENST00000374080		878	Gac/Tac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0025575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	69	392	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	63	328	0	ENST00000275493.2:c.2500G>C	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ctg																																																																														
ERF	0	MSKCC	GRCh37	19	42754654	42754654	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	51	436	0	ENST00000222329.4:c.86T>A	p.Leu29Gln	p.L29Q	ENST00000222329	NM_006494.2	29	cTg/cAg																																																																														
EGFR	0	MSKCC	GRCh37	7	55086998	55087018	+	inframe_deletion	In_Frame_Del	DEL	GCGCTCCTGGCGCTGCTGGCT	GCGCTCCTGGCGCTGCTGGCT	-			P-0025576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	23	347	0	ENST00000275493.2:c.34_54del	p.Leu12_Leu18del	p.L12_L18del	ENST00000275493	NM_005228.3	10	GCGCTCCTGGCGCTGCTGGCT/-																																																																														
GATA1	0	MSKCC	GRCh37	X	48650858	48650858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	38	385	1	ENST00000376670.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000376670	NM_002049.3	243	Cgg/Tgg																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612811	228612811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	53	662	0	ENST00000366696.1:c.216G>T	p.Met72Ile	p.M72I	ENST00000366696	NM_003493.2	72	atG/atT																																																																														
ATM	0	MSKCC	GRCh37	11	108186589	108186589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	109	499	1	ENST00000278616.4:c.6046G>A	p.Asp2016Asn	p.D2016N	ENST00000278616	NM_000051.3	2016	Gat/Aat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438064	49438064	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	95	638	0	ENST00000301067.7:c.5107C>T	p.Gln1703Ter	p.Q1703*	ENST00000301067	NM_003482.3	1703	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	385	642	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	301	503	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0025591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	299	437	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
RRAGC	0	MSKCC	GRCh37	1	39325107	39325107	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	439	346	0	ENST00000373001.3:c.212G>C	p.Arg71Pro	p.R71P	ENST00000373001	NM_022157.3	71	cGc/cCc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265584	41266314	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTA	TAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTA	-			P-0025591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	486	482	0	ENST00000349496.5:c.13+15_241+73del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
RASA1	0	MSKCC	GRCh37	5	86682717	86682718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	145	322	0	ENST00000274376.6:c.2925+1dup		p.-974fs	ENST00000274376	NM_002890.2	974	-/G																																																																														
TP53	0	MSKCC	GRCh37	17	7577070	7577070	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	298	641	0	ENST00000269305.4:c.868delC	p.Arg290AlafsTer55	p.R290Afs*55	ENST00000269305	NM_001126112.2	290	Cgc/gc																																																																														
ARID2	0	MSKCC	GRCh37	12	46244878	46244878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	125	647	0	ENST00000334344.6:c.2972C>G	p.Ser991Cys	p.S991C	ENST00000334344	NM_152641.2	991	tCc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	276	609	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	142	352	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212288985	212288985	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	39	605	0	ENST00000342788.4:c.2761T>G	p.Tyr921Asp	p.Y921D	ENST00000342788	NM_005235.2	921	Tat/Gat																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858567	27858567	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	45	224	0	ENST00000359303.2:c.4G>C	p.Ala2Pro	p.A2P	ENST00000359303	NM_003535.2	2	Gcc/Ccc																																																																														
CARD11	0	MSKCC	GRCh37	7	2951928	2951928	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0025596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	107	443	0	ENST00000396946.4:c.3022A>G	p.Ile1008Val	p.I1008V	ENST00000396946	NM_032415.4	1008	Atc/Gtc																																																																														
PREX2	0	MSKCC	GRCh37	8	69069643	69069643	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0025596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	228	611	0	ENST00000288368.4:c.4318A>T	p.Lys1440Ter	p.K1440*	ENST00000288368	NM_024870.2	1440	Aag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	433	585	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	143	457	0	ENST00000326873.7:c.709G>C	p.Asp237His	p.D237H	ENST00000326873	NM_000455.4	237	Gac/Cac																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600005	10600005	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	248	565	0	ENST00000171111.5:c.1571del	p.Gly524AlafsTer8	p.G524Afs*8	ENST00000171111	NM_203500.1	524	gGc/gc																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870833	12870833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	158	135	0	ENST00000228872.4:c.61del	p.Ala21ArgfsTer21	p.A21Rfs*21	ENST00000228872	NM_004064.3	20	caG/ca																																																																														
RAD51C	0	MSKCC	GRCh37	17	56774057	56774057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	196	461	0	ENST00000337432.4:c.408G>T	p.Met136Ile	p.M136I	ENST00000337432	NM_058216.2	136	atG/atT																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132621	11132621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	244	478	0	ENST00000344626.4:c.2837C>A	p.Pro946His	p.P946H	ENST00000344626	NM_003072.3	946	cCc/cAc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31388653	31388653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	230	432	0	ENST00000328111.2:c.1918G>T	p.Gly640Cys	p.G640C	ENST00000328111	NM_006892.3	640	Ggc/Tgc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121337	29121337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	262	599	0	ENST00000328354.6:c.338A>G	p.Tyr113Cys	p.Y113C	ENST00000328354	NM_007194.3	113	tAc/tGc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499486	89499486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	153	331	0	ENST00000336596.2:c.2656G>T	p.Gly886Cys	p.G886C	ENST00000336596	NM_005233.5	886	Ggc/Tgc																																																																														
TERT	0	MSKCC	GRCh37	5	1294553	1294554	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	74	258	0	ENST00000310581.5:c.447_448delinsTT	p.Val150Phe	p.V150F	ENST00000310581	NM_198253.2	149	ctGGtt/ctTTtt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31405810	31405810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	110	380	0	ENST00000344624.3:c.3968G>T	p.Gly1323Val	p.G1323V	ENST00000344624		1323	gGa/gTa																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138196135	138196135	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	139	364	0	ENST00000237289.4:c.449A>C	p.Gln150Pro	p.Q150P	ENST00000237289	NM_001270507.1	150	cAg/cCg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341818	8341818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	228	630	0	ENST00000356435.5:c.4822G>T	p.Ala1608Ser	p.A1608S	ENST00000356435		1608	Gca/Tca																																																																														
RBM10	0	MSKCC	GRCh37	X	47028757	47028757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	222	501	1	ENST00000329236.7:c.61C>A	p.Arg21Ser	p.R21S	ENST00000329236	NM_001204466.1	21	Cgc/Agc																																																																														
GATA1	0	MSKCC	GRCh37	X	48651700	48651700	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	177	392	0	ENST00000376670.3:c.866A>T	p.His289Leu	p.H289L	ENST00000376670	NM_002049.3	289	cAc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	712	708	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	431	665	0	ENST00000269305.4:c.653T>A	p.Val218Glu	p.V218E	ENST00000269305	NM_001126112.2	218	gTg/gAg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356412	66356412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	83	472	0	ENST00000273854.3:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000273854	NM_004439.5	362	cGg/cAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151849798	151849798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	33	274	0	ENST00000262189.6:c.12518C>T	p.Thr4173Ile	p.T4173I	ENST00000262189	NM_170606.2	4173	aCa/aTa																																																																														
STAT5B	0	MSKCC	GRCh37	17	40362221	40362221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	87	498	0	ENST00000293328.3:c.1874G>A	p.Gly625Asp	p.G625D	ENST00000293328	NM_012448.3	625	gGc/gAc																																																																														
KIT	0	MSKCC	GRCh37	4	55593609	55593659	+	inframe_deletion	In_Frame_Del	DEL	GTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAA	GTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAA	-			P-0025602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	68	538	0	ENST00000288135.5:c.1675_1725del	p.Val559_Gln575del	p.V559_Q575del	ENST00000288135	NM_000222.2	559	GTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAA/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	746	792	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
WT1	0	MSKCC	GRCh37	11	32417943	32417943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1376	188	618	0	ENST00000332351.3:c.1109G>A	p.Arg370His	p.R370H	ENST00000332351	NM_024426.4	370	cGt/cAt																																																																														
CTCF	0	MSKCC	GRCh37	16	67654643	67654643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	37	473	1	ENST00000264010.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000264010	NM_006565.3	377	cGt/cAt																																																																														
CTCF	0	MSKCC	GRCh37	16	67645192	67645196	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAT	ATGAT	-			P-0025604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	133	496	0	ENST00000264010.4:c.460_464del	p.Ile154ProfsTer7	p.I154Pfs*7	ENST00000264010	NM_006565.3	153	ATGATa/a																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	39	230	0				ENST00000310581	NM_198253.2																																																																																
RHOA	0	MSKCC	GRCh37	3	49405951	49405951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	137	519	1	ENST00000418115.1:c.187C>A	p.Gln63Lys	p.Q63K	ENST00000418115	NM_001664.2	63	Cag/Aag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11169512	11169512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	142	472	0	ENST00000344626.4:c.4582G>T	p.Asp1528Tyr	p.D1528Y	ENST00000344626	NM_003072.3	1528	Gac/Tac																																																																														
TSC1	7248	MSKCC	GRCh37	9	135797314	135797314	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	47	316	0	ENST00000298552.3:c.555del	p.Tyr185Ter	p.Y185*	ENST00000298552	NM_001162426.1	185	taC/ta																																																																														
TSC1	0	MSKCC	GRCh37	9	135797313	135797313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	24	315	0	ENST00000298552.3:c.556G>C	p.Ala186Pro	p.A186P	ENST00000298552	NM_001162426.1	186	Gca/Cca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	884	614	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0025608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	227	491	0				ENST00000310581	NM_198253.2																																																																																
IKZF1	0	MSKCC	GRCh37	7	50367257	50367257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	245	525	1	ENST00000331340.3:c.64G>A	p.Asp22Asn	p.D22N	ENST00000331340	NM_006060.4	22	Gat/Aat																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643419	38643419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	431	693	0	ENST00000299084.4:c.889G>A	p.Gly297Arg	p.G297R	ENST00000299084	NM_152594.2	297	Ggg/Agg																																																																														
FLCN	0	MSKCC	GRCh37	17	17127389	17127390	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0025608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	381	797	3	ENST00000285071.4:c.464_465delinsGT	p.Thr155Ser	p.T155S	ENST00000285071	NM_144997.5	155	aCC/aGT																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273042	18273042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	233	787	2	ENST00000222254.8:c.932C>T	p.Pro311Leu	p.P311L	ENST00000222254	NM_005027.3	311	cCg/cTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8517884	8517884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	491	433	0	ENST00000356435.5:c.1507C>G	p.Leu503Val	p.L503V	ENST00000356435		503	Ctt/Gtt																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	723	688	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0025609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	123	451	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
CCND2	0	MSKCC	GRCh37	12	4398043	4398043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	349	732	2	ENST00000261254.3:c.607G>A	p.Ala203Thr	p.A203T	ENST00000261254	NM_001759.3	203	Gca/Aca																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350339	89350339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201607978		P-0025609-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	224	923	0	ENST00000301030.4:c.2611G>A	p.Asp871Asn	p.D871N	ENST00000301030	NM_001256183.1	871	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	174	814	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16052797	16052801	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAT	AAAAT	-			P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	139	727	0	ENST00000268712.3:c.873_877del	p.Leu291PhefsTer2	p.L291Ffs*2	ENST00000268712	NM_006311.3	291	ttATTTTtt/tttt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	12	781	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
AR	0	MSKCC	GRCh37	X	66765163	66765163	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	12	314	0	ENST00000374690.3:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000374690	NM_000044.3	59	Cag/Tag																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871059	12871059	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	103	411	0	ENST00000228872.4:c.286A>T	p.Lys96Ter	p.K96*	ENST00000228872	NM_004064.3	96	Aaa/Taa																																																																														
SPRED1	0	MSKCC	GRCh37	15	38545402	38545402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	32	778	0	ENST00000299084.4:c.16G>C	p.Ala6Pro	p.A6P	ENST00000299084	NM_152594.2	6	Gcg/Ccg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155599	56155599	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	205	587	0	ENST00000399503.3:c.691G>T	p.Glu231Ter	p.E231*	ENST00000399503	NM_005921.1	231	Gag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	57	446	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	150	909	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099846	27099847	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	74	621	0	ENST00000324856.7:c.3726dup	p.Asp1243Ter	p.D1243*	ENST00000324856	NM_006015.4	1242	agt/agTt																																																																														
ELF3	0	MSKCC	GRCh37	1	201981874	201981875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	206	1019	0	ENST00000359651.3:c.586dup	p.Val196GlyfsTer21	p.V196Gfs*21	ENST00000359651		195	-/G																																																																														
KMT2B	0	MSKCC	GRCh37	19	36219955	36219955	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	161	744	0	ENST00000222270.7:c.4757A>G	p.Lys1586Arg	p.K1586R	ENST00000222270	NM_014727.1	1586	aAa/aGa																																																																														
SETD2	0	MSKCC	GRCh37	3	47163446	47163446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	53	532	0	ENST00000409792.3:c.2680A>G	p.Ser894Gly	p.S894G	ENST00000409792	NM_014159.6	894	Agt/Ggt																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651910	36651911	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	324	700	0	ENST00000244741.5:c.35dup	p.Cys13MetfsTer23	p.C13Mfs*23	ENST00000244741	NM_000389.4	11	aac/aaCc																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	300	616	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
APC	0	MSKCC	GRCh37	5	112163696	112163697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	137	348	0	ENST00000257430.4:c.1620dupA	p.Gln541ThrfsTer19	p.Q541Tfs*19	ENST00000257430	NM_000038.5	540	tta/ttAa																																																																														
NUF2	0	MSKCC	GRCh37	1	163306559	163306559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	112	488	2	ENST00000271452.3:c.356G>A	p.Arg119Gln	p.R119Q	ENST00000271452	NM_145697.2	119	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112162945	112162946	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0025686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	69	323	0	ENST00000257430.4:c.1548+2dup		p.X516_splice	ENST00000257430	NM_000038.5	516																																																																															
KMT2C	0	MSKCC	GRCh37	7	151945112	151945112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025686-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	16	394	2	ENST00000262189.6:c.2407G>T	p.Ala803Ser	p.A803S	ENST00000262189	NM_170606.2	803	Gct/Tct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	171	728	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	15	133	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	109	642	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
RAD52	0	MSKCC	GRCh37	12	1023068	1023068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	163	461	0	ENST00000358495.3:c.1187G>A	p.Arg396His	p.R396H	ENST00000358495	NM_134424.2	396	cGc/cAc																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	14	123	2	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																														
MDM2	0	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	75	324	0	ENST00000462284.1:c.961delC	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																																																														
SPEN	0	MSKCC	GRCh37	1	16255142	16255145	+	frameshift_variant	Frame_Shift_Del	DEL	GAGA	GAGA	-			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	79	370	0	ENST00000375759.3:c.2415_2418del	p.Glu805AspfsTer3	p.E805Dfs*3	ENST00000375759	NM_015001.2	803	GAGAga/ga																																																																														
CUL3	0	MSKCC	GRCh37	2	225368387	225368388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	110	474	0	ENST00000264414.4:c.1358dupA	p.Asn453LysfsTer5	p.N453Kfs*5	ENST00000264414	NM_003590.4	453	aac/aaAc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874092	151874092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	165	597	0	ENST00000262189.6:c.8446T>A	p.Ser2816Thr	p.S2816T	ENST00000262189	NM_170606.2	2816	Tcc/Acc																																																																														
PAK1	0	MSKCC	GRCh37	11	77054906	77054906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	131	544	0	ENST00000356341.3:c.956T>C	p.Met319Thr	p.M319T	ENST00000356341	NM_002576.4	319	aTg/aCg																																																																														
PGR	0	MSKCC	GRCh37	11	100920723	100920723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	90	536	0	ENST00000325455.5:c.2425G>C	p.Val809Leu	p.V809L	ENST00000325455	NM_001202474.3	809	Gtc/Ctc																																																																														
BABAM1	0	MSKCC	GRCh37	19	17379748	17379748	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202199976		P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	136	947	0	ENST00000359435.4:c.133G>A	p.Val45Met	p.V45M	ENST00000359435	NM_001033549.1	45	Gtg/Atg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212570054	212570054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	123	474	0	ENST00000342788.4:c.1187G>C	p.Arg396Thr	p.R396T	ENST00000342788	NM_005235.2	396	aGa/aCa																																																																														
MLH1	0	MSKCC	GRCh37	3	37083818	37083818	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	101	444	1	ENST00000231790.2:c.1727T>C	p.Leu576Ser	p.L576S	ENST00000231790	NM_000249.3	576	tTa/tCa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55161387	55161388	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	202	503	1	ENST00000257290.5:c.3218_3219delinsAT	p.Met1073Asn	p.M1073N	ENST00000257290	NM_006206.4	1073	aTG/aAT																																																																														
IRF4	0	MSKCC	GRCh37	6	393186	393186	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	103	335	0	ENST00000380956.4:c.34T>G	p.Phe12Val	p.F12V	ENST00000380956	NM_001195286.1	12	Ttc/Gtc																																																																														
KMT2C	0	MSKCC	GRCh37	7	152008931	152008931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	133	536	0	ENST00000262189.6:c.691G>C	p.Val231Leu	p.V231L	ENST00000262189	NM_170606.2	231	Gtt/Ctt																																																																														
AGO2	0	MSKCC	GRCh37	8	141570600	141570600	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	66	395	1	ENST00000220592.5:c.528del	p.Val177TrpfsTer37	p.V177Wfs*37	ENST00000220592	NM_012154.3	176	ccC/cc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971050	21971059	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCCCCGG	CGCGCCCCGG	AGCCCCCGC			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	111	302	2	ENST00000304494.5:c.299_308delinsGCGGGGGCT	p.Ala100GlyfsTer46	p.A100Gfs*46	ENST00000304494	NM_000077.4	100	gCCGGGGCGCGg/gGCGGGGGCTg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971050	21971059	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCCCCGG	CGCGCCCCGG	AGCCCCCGC			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	111	302	2	ENST00000304494.5:c.299_308delinsGCGGGGGCT	p.Ala100GlyfsTer46	p.A100Gfs*46	ENST00000304494	NM_000077.4	100	gCCGGGGCGCGg/gGCGGGGGCTg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971050	21971059	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCCCCGG	CGCGCCCCGG	AGCCCCCGC			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	111	302	2	ENST00000304494.5:c.299_308delinsGCGGGGGCT	p.Ala100GlyfsTer46	p.A100Gfs*46	ENST00000304494	NM_000077.4	100	gCCGGGGCGCGg/gGCGGGGGCTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139405179	139405179	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	116	775	0	ENST00000277541.6:c.2666del	p.Gly889AlafsTer290	p.G889Afs*290	ENST00000277541	NM_017617.3	889	gGc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	226	562	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0025694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	89	430	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	175	464	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	160	528	2	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266678	41266680	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0025694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	75	423	0	ENST00000349496.5:c.477_479del	p.Leu160del	p.L160del	ENST00000349496	NM_001904.3	159	CTG/-																																																																														
APC	0	MSKCC	GRCh37	5	112175155	112175161	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTAAT	ATGTAAT	-			P-0025694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	45	213	0	ENST00000257430.4:c.3864_3870del	p.Cys1289ArgfsTer14	p.C1289Rfs*14	ENST00000257430	NM_000038.5	1288	ggATGTAAT/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	114	519	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913559	32913559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	113	347	0	ENST00000380152.3:c.5073del	p.Lys1691AsnfsTer15	p.K1691Nfs*15	ENST00000380152		1689	gcA/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	9	556	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	183	490	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	87	280	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	90	373	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	100	171	1	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808659	1808659	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs56266857		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	242	692	0	ENST00000260795.2:c.2272G>A	p.Asp758Asn	p.D758N	ENST00000260795		758	Gac/Aac																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	163	574	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	172	682	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	17	562	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288710	15288710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	14	33	0	ENST00000263388.2:c.4029del	p.Cys1344ValfsTer76	p.C1344Vfs*76	ENST00000263388	NM_000435.2	1343	ccC/cc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	120	322	2	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	66	262	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
JAK1	0	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	94	329	4	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	249	389	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FGFR4	0	MSKCC	GRCh37	5	176517552	176517552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	230	675	4	ENST00000292408.4:c.253C>T	p.Arg85Cys	p.R85C	ENST00000292408	NM_213647.1	85	Cgc/Tgc																																																																														
APC	0	MSKCC	GRCh37	5	112174484	112174484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	96	251	2	ENST00000257430.4:c.3193C>T	p.Gln1065Ter	p.Q1065*	ENST00000257430	NM_000038.5	1065	Caa/Taa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098423	11098423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	98	326	0	ENST00000344626.4:c.941C>T	p.Ala314Val	p.A314V	ENST00000344626	NM_003072.3	314	gCg/gTg																																																																														
DIS3	0	MSKCC	GRCh37	13	73337684	73337684	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	71	273	2	ENST00000377767.4:c.2032delA	p.Ile678PhefsTer59	p.I678Ffs*59	ENST00000377767	NM_014953.3	678	Att/tt																																																																														
IRS1	0	MSKCC	GRCh37	2	227661395	227661396	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	68	410	0	ENST00000305123.5:c.2057_2059dup	p.Ser686dup	p.S686dup	ENST00000305123	NM_005544.2	686	aac/aGCAac																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32190326	32190326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	137	484	0	ENST00000375023.3:c.413C>T	p.Ser138Leu	p.S138L	ENST00000375023	NM_004557.3	138	tCg/tTg																																																																														
CTCF	0	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	128	318	0	ENST00000264010.4:c.609_610dup	p.Thr204LysfsTer19	p.T204Kfs*19	ENST00000264010	NM_006565.3	201	-/AA																																																																														
CDK12	0	MSKCC	GRCh37	17	37686900	37686901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	136	425	0	ENST00000447079.4:c.3810dup	p.Gly1271ArgfsTer13	p.G1271Rfs*13	ENST00000447079	NM_015083.1	1268	-/C																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45656840	45656840	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	164	483	2	ENST00000407780.3:c.316del	p.Gln106ArgfsTer11	p.Q106Rfs*11	ENST00000407780	NM_001283052.1	106	Cag/ag																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	337	628	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PMS1	0	MSKCC	GRCh37	2	190682831	190682831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	152	393	0	ENST00000441310.2:c.512del	p.Lys171ArgfsTer7	p.K171Rfs*7	ENST00000441310	NM_000534.4	169	atA/at																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138112	64138112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	186	472	0	ENST00000334205.4:c.2035G>A	p.Ala679Thr	p.A679T	ENST00000334205	NM_003942.2	679	Gcg/Acg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120269	94120269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	88	257	0	ENST00000369303.4:c.782G>A	p.Gly261Glu	p.G261E	ENST00000369303	NM_004440.3	261	gGa/gAa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462032	120462032	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201996575		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	169	474	0	ENST00000256646.2:c.5684G>A	p.Arg1895His	p.R1895H	ENST00000256646	NM_024408.3	1895	cGt/cAt																																																																														
SUFU	0	MSKCC	GRCh37	10	104269023	104269023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	174	550	1	ENST00000369902.3:c.280G>A	p.Gly94Ser	p.G94S	ENST00000369902	NM_016169.3	94	Ggc/Agc																																																																														
FLT4	0	MSKCC	GRCh37	5	180048772	180048772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	207	652	0	ENST00000261937.6:c.1790C>T	p.Thr597Met	p.T597M	ENST00000261937	NM_182925.4	597	aCg/aTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	165	535	1	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
BARD1	0	MSKCC	GRCh37	2	215645975	215645975	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	121	454	2	ENST00000260947.4:c.623delA	p.Lys208ArgfsTer4	p.K208Rfs*4	ENST00000260947	NM_000465.2	208	aAg/ag																																																																														
SOX9	0	MSKCC	GRCh37	17	70119769	70119769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	172	514	0	ENST00000245479.2:c.774del	p.Leu259CysfsTer20	p.L259Cfs*20	ENST00000245479	NM_000346.3	257	cgC/cg																																																																														
SPEN	0	MSKCC	GRCh37	1	16257644	16257644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	176	489	0	ENST00000375759.3:c.4909G>A	p.Val1637Ile	p.V1637I	ENST00000375759	NM_015001.2	1637	Gtt/Att																																																																														
TCF3	0	MSKCC	GRCh37	19	1612347	1612347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200962332		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	243	687	7	ENST00000344749.5:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000344749	NM_001136139.2	558	Cgc/Tgc																																																																														
DICER1	0	MSKCC	GRCh37	14	95560403	95560403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	170	452	1	ENST00000343455.3:c.5186C>T	p.Pro1729Leu	p.P1729L	ENST00000343455	NM_177438.2	1729	cCg/cTg																																																																														
CD79A	0	MSKCC	GRCh37	19	42383185	42383185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	169	516	2	ENST00000221972.3:c.205G>A	p.Val69Ile	p.V69I	ENST00000221972	NM_021601.3	69	Gtc/Atc																																																																														
FGF19	0	MSKCC	GRCh37	11	69518446	69518446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	53	151	0	ENST00000294312.3:c.199G>A	p.Val67Ile	p.V67I	ENST00000294312	NM_005117.2	67	Gtc/Atc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416497	49416497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	183	470	0	ENST00000301067.7:c.16214G>A	p.Arg5405His	p.R5405H	ENST00000301067	NM_003482.3	5405	cGt/cAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425556	49425556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	200	765	0	ENST00000301067.7:c.12932C>A	p.Pro4311Gln	p.P4311Q	ENST00000301067	NM_003482.3	4311	cCa/cAa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434958	49434959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	102	427	0	ENST00000301067.7:c.6594dupC	p.Tyr2199LeufsTer3	p.Y2199Lfs*3	ENST00000301067	NM_003482.3	2198	-/C																																																																														
HNF1A	0	MSKCC	GRCh37	12	121432117	121432118	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	93	564	0	ENST00000257555.6:c.871_872dup	p.Gly292GlnfsTer51	p.G292Qfs*51	ENST00000257555		288	-/CC																																																																														
BRCA2	0	MSKCC	GRCh37	13	32968855	32968855	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	106	295	0	ENST00000380152.3:c.9286G>A	p.Glu3096Lys	p.E3096K	ENST00000380152		3096	Gaa/Aaa																																																																														
IRS2	0	MSKCC	GRCh37	13	110435907	110435907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	135	513	0	ENST00000375856.3:c.2494C>T	p.Arg832Cys	p.R832C	ENST00000375856	NM_003749.2	832	Cgc/Tgc																																																																														
SLX4	0	MSKCC	GRCh37	16	3645613	3645613	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200807331		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	212	550	2	ENST00000294008.3:c.2006G>A	p.Arg669His	p.R669H	ENST00000294008	NM_032444.2	669	cGc/cAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845496	72845496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	147	449	0	ENST00000268489.5:c.3844G>A	p.Val1282Met	p.V1282M	ENST00000268489	NM_006885.3	1282	Gtg/Atg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351959	89351959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	256	791	0	ENST00000301030.4:c.991G>A	p.Ala331Thr	p.A331T	ENST00000301030	NM_001256183.1	331	Gcc/Acc																																																																														
NF1	0	MSKCC	GRCh37	17	29533369	29533369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	81	177	0	ENST00000358273.4:c.1372C>A	p.Pro458Thr	p.P458T	ENST00000358273	NM_001042492.2	458	Cca/Aca																																																																														
NF1	0	MSKCC	GRCh37	17	29664546	29664546	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	143	477	0	ENST00000358273.4:c.6591del	p.Phe2197LeufsTer3	p.F2197Lfs*3	ENST00000358273	NM_001042492.2	2196	acT/ac																																																																														
BRCA1	0	MSKCC	GRCh37	17	41246294	41246294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	192	560	0	ENST00000357654.3:c.1254G>T	p.Glu418Asp	p.E418D	ENST00000357654	NM_007294.3	418	gaG/gaT																																																																														
DOT1L	0	MSKCC	GRCh37	19	2207591	2207591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	160	504	0	ENST00000398665.3:c.875G>A	p.Arg292His	p.R292H	ENST00000398665	NM_032482.2	292	cGc/cAc																																																																														
MITF	0	MSKCC	GRCh37	3	70014293	70014293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	178	560	0	ENST00000352241.4:c.1457C>A	p.Pro486His	p.P486H	ENST00000352241	NM_198159.2	486	cCc/cAc																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032275	26032275	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	58	215	0	ENST00000244661.2:c.14A>G	p.Lys5Arg	p.K5R	ENST00000244661	NM_003537.3	5	aAa/aGa																																																																														
STK19	0	MSKCC	GRCh37	6	31948517	31948517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	57	155	2	ENST00000375331.2:c.988G>A	p.Val330Met	p.V330M	ENST00000375331	NM_004197.1	330	Gtg/Atg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956658	93956658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	81	340	0	ENST00000369303.4:c.2578G>A	p.Asp860Asn	p.D860N	ENST00000369303	NM_004440.3	860	Gac/Aac																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138202350	138202351	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	120	455	0	ENST00000237289.4:c.2274dup	p.Lys759GlnfsTer10	p.K759Qfs*10	ENST00000237289	NM_001270507.1	756	gac/gaCc																																																																														
PMS2	0	MSKCC	GRCh37	7	6026721	6026721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	164	510	0	ENST00000265849.7:c.1675G>A	p.Gly559Arg	p.G559R	ENST00000265849	NM_000535.5	559	Gga/Aga																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845523	151845524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	155	523	0	ENST00000262189.6:c.13488dup	p.Lys4497Ter	p.K4497*	ENST00000262189	NM_170606.2	4496	-/T																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874679	151874679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	144	406	0	ENST00000262189.6:c.7859C>A	p.Pro2620His	p.P2620H	ENST00000262189	NM_170606.2	2620	cCt/cAt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98268849	98268849	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	88	289	0	ENST00000331920.6:c.234G>A	p.Trp78Ter	p.W78*	ENST00000331920	NM_000264.3	78	tgG/tgA																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900238	101900238	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201021249		P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	117	384	0	ENST00000374994.4:c.672G>A	p.Trp224Ter	p.W224*	ENST00000374994	NM_004612.2	224	tgG/tgA																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101904896	101904897	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	93	329	0	ENST00000374994.4:c.887_888del	p.Thr296SerfsTer36	p.T296Sfs*36	ENST00000374994	NM_004612.2	295	tAC/t																																																																														
MED12	0	MSKCC	GRCh37	X	70341208	70341208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	127	231	0	ENST00000374080.3:c.767C>T	p.Thr256Ile	p.T256I	ENST00000374080		256	aCc/aTc																																																																														
POLE	0	MSKCC	GRCh37	12	133219832	133219832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	117	377	0	ENST00000320574.5:c.4529C>T	p.Ala1510Val	p.A1510V	ENST00000320574	NM_006231.2	1510	gCa/gTa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099173	157099173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	23	195	0	ENST00000346085.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000346085	NM_020732.3	37	tCc/tAc																																																																														
GLI1	0	MSKCC	GRCh37	12	57858600	57858600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	51	425	0	ENST00000228682.2:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000228682	NM_005269.2	113	cGa/cAa																																																																														
MALT1	0	MSKCC	GRCh37	18	56390361	56390361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	175	320	0	ENST00000348428.3:c.1100A>G	p.Tyr367Cys	p.Y367C	ENST00000348428	NM_006785.3	367	tAc/tGc																																																																														
MED12	0	MSKCC	GRCh37	X	70348984	70348984	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	159	411	0	ENST00000374080.3:c.3496G>T	p.Glu1166Ter	p.E1166*	ENST00000374080		1166	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	60	410	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891251	101891251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	44	390	0	ENST00000374994.4:c.212G>T	p.Cys71Phe	p.C71F	ENST00000374994	NM_004612.2	71	tGt/tTt																																																																														
ARID2	0	MSKCC	GRCh37	12	46244000	46244010	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGTGACTG	TCCAGTGACTG	-			P-0025698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	59	415	1	ENST00000334344.6:c.2096_2106del	p.Pro699HisfsTer4	p.P699Hfs*4	ENST00000334344	NM_152641.2	698	gcTCCAGTGACTGtc/gctc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000034-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	27	70	0	ENST00000324856.7:c.413C>G	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tGa																																																																														
RYBP	0	MSKCC	GRCh37	3	72427550	72427550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000034-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	102	393	0	ENST00000477973.2:c.938G>C	p.Asp314His	p.D314H	ENST00000477973	NM_012234.5	314	Gat/Cat																																																																														
FAT1	0	MSKCC	GRCh37	4	187540074	187540074	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000034-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	78	788	0	ENST00000441802.2:c.7666C>T	p.Arg2556Ter	p.R2556*	ENST00000441802	NM_005245.3	2556	Cga/Tga																																																																														
FGFR4	0	MSKCC	GRCh37	5	176518800	176518800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000034-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	24	405	0	ENST00000292408.4:c.718G>C	p.Asp240His	p.D240H	ENST00000292408	NM_213647.1	240	Gat/Cat																																																																														
BLM	0	MSKCC	GRCh37	15	91292745	91292745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000034-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			721	59	598	0	ENST00000355112.3:c.247C>T	p.Gln83Ter	p.Q83*	ENST00000355112	NM_000057.2	83	Cag/Tag																																																																														
BLM	0	MSKCC	GRCh37	15	91292809	91292809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000034-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	51	613	0	ENST00000355112.3:c.311C>T	p.Ser104Leu	p.S104L	ENST00000355112	NM_000057.2	104	tCa/tTa																																																																														
BLM	0	MSKCC	GRCh37	15	91292815	91292815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000034-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			641	51	618	0	ENST00000355112.3:c.317C>A	p.Ser106Ter	p.S106*	ENST00000355112	NM_000057.2	106	tCa/tAa																																																																														
BLM	0	MSKCC	GRCh37	15	91292904	91292904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000034-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			685	44	584	0	ENST00000355112.3:c.406C>G	p.Leu136Val	p.L136V	ENST00000355112	NM_000057.2	136	Ctc/Gtc																																																																														
BLM	0	MSKCC	GRCh37	15	91292951	91292951	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000034-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			709	42	618	0	ENST00000355112.3:c.453C>G	p.Ile151Met	p.I151M	ENST00000355112	NM_000057.2	151	atC/atG																																																																														
BLM	0	MSKCC	GRCh37	15	91293024	91293024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000034-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			802	45	670	0	ENST00000355112.3:c.526C>G	p.His176Asp	p.H176D	ENST00000355112	NM_000057.2	176	Cac/Gac																																																																														
CIC	0	MSKCC	GRCh37	19	42796756	42796756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000034-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	76	439	0	ENST00000575354.2:c.3214G>A	p.Val1072Met	p.V1072M	ENST00000575354	NM_015125.3	1072	Gtg/Atg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969425	44969425	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000034-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	284	408	0	ENST00000377967.4:c.4108delG	p.Glu1370LysfsTer6	p.E1370Kfs*6	ENST00000377967	NM_021140.2	1369	ttG/tt																																																																														
FAT1	0	MSKCC	GRCh37	4	187521219	187521219	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	82	715	0	ENST00000441802.2:c.11936C>G	p.Ser3979Cys	p.S3979C	ENST00000441802	NM_005245.3	3979	tCc/tGc																																																																														
POLE	0	MSKCC	GRCh37	12	133212482	133212482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	61	410	0	ENST00000320574.5:c.5807G>A	p.Gly1936Glu	p.G1936E	ENST00000320574	NM_006231.2	1936	gGa/gAa																																																																														
FLCN	0	MSKCC	GRCh37	17	17129492	17129492	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	24	379	0	ENST00000285071.4:c.394G>A	p.Glu132Lys	p.E132K	ENST00000285071	NM_144997.5	132	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	97	350	0	ENST00000269305.4:c.716delA	p.Asn239ThrfsTer8	p.N239Tfs*8	ENST00000269305	NM_001126112.2	239	aAc/ac																																																																														
PARP1	0	MSKCC	GRCh37	1	226567336	226567336	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000132-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			250	565	335	1	ENST00000366794.5:c.1550A>G	p.Asn517Ser	p.N517S	ENST00000366794	NM_001618.3	517	aAc/aGc																																																																														
SETD2	0	MSKCC	GRCh37	3	47143020	47143020	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000132-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	374	317	0	ENST00000409792.3:c.4943T>G	p.Val1648Gly	p.V1648G	ENST00000409792	NM_014159.6	1648	gTt/gGt																																																																														
ATR	0	MSKCC	GRCh37	3	142253975	142253975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000132-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			819	355	234	1	ENST00000350721.4:c.3892G>T	p.Asp1298Tyr	p.D1298Y	ENST00000350721	NM_001184.3	1298	Gat/Tat																																																																														
MLL3	0	MSKCC	GRCh37	7	151949794	151949794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000132-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	243	208	0	ENST00000262189.6:c.1306A>G	p.Arg436Gly	p.R436G	ENST00000262189	NM_170606.2	436	Aga/Gga																																																																														
TP53	0	MSKCC	GRCh37	17	7578523	7578523	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000132-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	619	313	8	ENST00000269305.4:c.407A>C	p.Gln136Pro	p.Q136P	ENST00000269305	NM_001126112.2	136	cAa/cCa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11145650	11145650	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000132-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			681	160	369	0	ENST00000344626.4:c.4012A>G	p.Met1338Val	p.M1338V	ENST00000344626	NM_003072.3	1338	Atg/Gtg																																																																														
GNAS	0	MSKCC	GRCh37	20	57484750	57484750	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000132-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	331	299	0	ENST00000371085.3:c.730A>G	p.Ile244Val	p.I244V	ENST00000371085	NM_000516.4	244	Atc/Gtc																																																																														
RB1	0	MSKCC	GRCh37	13	49033871	49033871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000132-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	718	378	0	ENST00000267163.4:c.2008delC	p.Leu670CysfsTer7	p.L670Cfs*7	ENST00000267163	NM_000321.2	670	Ctg/tg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1131	273	368	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	53	474	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MSH2	0	MSKCC	GRCh37	2	47657066	47657066	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	31	209	0	ENST00000233146.2:c.1262T>G	p.Leu421Arg	p.L421R	ENST00000233146	NM_000251.2	421	cTg/cGg																																																																														
TERT	0	MSKCC	GRCh37	5	1279525	1279525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	34	354	0	ENST00000310581.5:c.2011C>T	p.Arg671Trp	p.R671W	ENST00000310581	NM_198253.2	671	Cgg/Tgg																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000152-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			238	129	353	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984848	11984848	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0000152-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			135	182	212	0	ENST00000353533.5:c.393+1G>A		p.X131_splice	ENST00000353533	NM_003010.3	131																																																																															
PAX5	0	MSKCC	GRCh37	9	36882049	36882049	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34810717		P-0000152-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			509	184	403	0	ENST00000358127.4:c.964G>A	p.Ala322Thr	p.A322T	ENST00000358127	NM_001280556.1	322	Gct/Act																																																																														
GLI1	0	MSKCC	GRCh37	12	57865491	57865491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000152-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			700	468	570	1	ENST00000228682.2:c.2968C>T	p.Arg990Ter	p.R990*	ENST00000228682	NM_005269.2	990	Cga/Tga																																																																														
SOX9	0	MSKCC	GRCh37	17	70120512	70120512	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000152-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			522	105	294	0	ENST00000245479.2:c.1514A>T	p.Gln505Leu	p.Q505L	ENST00000245479	NM_000346.3	505	cAg/cTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11145635	11145635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000152-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			507	148	295	2	ENST00000344626.4:c.3997C>T	p.Arg1333Trp	p.R1333W	ENST00000344626	NM_003072.3	1333	Cgg/Tgg																																																																														
HGF	0	MSKCC	GRCh37	7	81331973	81331973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000191-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1173	470	520	0	ENST00000222390.5:c.2111G>A	p.Gly704Asp	p.G704D	ENST00000222390	NM_000601.4	704	gGt/gAt																																																																														
KDM5A	0	MSKCC	GRCh37	12	404947	404947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000191-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1798	284	620	0	ENST00000399788.2:c.4247C>G	p.Pro1416Arg	p.P1416R	ENST00000399788	NM_001042603.1	1416	cCa/cGa																																																																														
IGF1	0	MSKCC	GRCh37	12	102811750	102811750	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000191-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1653	92	593	0	ENST00000307046.8:c.434A>G	p.Lys145Arg	p.K145R	ENST00000307046	NM_001111285.1	145	aAg/aGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000191-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	612	323	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000192-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			723	126	655	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871119	12871119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000192-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			474	38	341	0	ENST00000228872.4:c.346G>A	p.Ala116Thr	p.A116T	ENST00000228872	NM_004064.3	116	Gcg/Acg																																																																														
MEN1	0	MSKCC	GRCh37	11	64575153	64575153	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000203-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	317	243	0	ENST00000337652.1:c.670-1G>T		p.X224_splice	ENST00000337652	NM_130803.2	224																																																																															
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000203-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	596	379	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000233-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			904	20	271	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NSD1	0	MSKCC	GRCh37	5	176710908	176710908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000236-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	148	407	0	ENST00000439151.2:c.6130G>T	p.Ala2044Ser	p.A2044S	ENST00000439151	NM_022455.4	2044	Gca/Tca																																																																														
CARD11	0	MSKCC	GRCh37	7	2952978	2952978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000236-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	103	275	0	ENST00000396946.4:c.2962C>A	p.Leu988Met	p.L988M	ENST00000396946	NM_032415.4	988	Ctg/Atg																																																																														
EGFR	0	MSKCC	GRCh37	7	55259476	55259476	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000236-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	80	270	0	ENST00000275493.2:c.2534T>A	p.Val845Glu	p.V845E	ENST00000275493	NM_005228.3	845	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000236-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	80	272	0	ENST00000269305.4:c.532C>G	p.His178Asp	p.H178D	ENST00000269305	NM_001126112.2	178	Cac/Gac																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			260	157	377	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187541675	187541675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	134	267	1	ENST00000441802.2:c.6065G>T	p.Arg2022Ile	p.R2022I	ENST00000441802	NM_005245.3	2022	aGa/aTa																																																																														
SUZ12	0	MSKCC	GRCh37	17	30293194	30293194	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	145	321	0	ENST00000322652.5:c.484A>C	p.Thr162Pro	p.T162P	ENST00000322652	NM_015355.2	162	Act/Cct																																																																														
VHL	0	MSKCC	GRCh37	3	10183764	10183764	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs5030804		P-0000272-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	24	259	0	ENST00000256474.2:c.233A>G	p.Asn78Ser	p.N78S	ENST00000256474	NM_000551.3	78	aAt/aGt																																																																														
MLH1	0	MSKCC	GRCh37	3	37083818	37083818	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000272-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	58	446	0	ENST00000231790.2:c.1727T>A	p.Leu576Ter	p.L576*	ENST00000231790	NM_000249.3	576	tTa/tAa																																																																														
CARD11	0	MSKCC	GRCh37	7	2962294	2962294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000272-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	55	439	0	ENST00000396946.4:c.2243C>T	p.Thr748Met	p.T748M	ENST00000396946	NM_032415.4	748	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579572	7579572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000272-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	20	309	0	ENST00000269305.4:c.115G>T	p.Ala39Ser	p.A39S	ENST00000269305	NM_001126112.2	39	Gca/Tca																																																																														
BAP1	0	MSKCC	GRCh37	3	52442556	52442557	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0000272-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	26	223	0	ENST00000460680.1:c.188_189delCT	p.Ser63TyrfsTer5	p.S63Yfs*5	ENST00000460680	NM_004656.3	63	tCT/t																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52584583	52584583	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000272-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	26	414	0	ENST00000394830.3:c.4430del	p.Pro1477LeufsTer12	p.P1477Lfs*12	ENST00000394830	NM_018313.4	1477	cCt/ct																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310879	123310879	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000272-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	33	435	0	ENST00000358487.5:c.549delG	p.Asn184ThrfsTer9	p.N184Tfs*9	ENST00000358487	NM_000141.4	183	ggG/gg																																																																														
MET	0	MSKCC	GRCh37	7	116412030	116412044	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TACTTTTCCAGAAGG	TACTTTTCCAGAAGG	-			P-0000289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	58	158	0	ENST00000397752.3:c.3017_3028+3delCTTTTCCAGAAGGTA		p.X1006_splice	ENST00000397752	NM_000245.2	1006																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	96	269	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25471040	25471040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	116	478	0	ENST00000264709.3:c.721G>A	p.Glu241Lys	p.E241K	ENST00000264709	NM_175629.2	241	Gag/Aag																																																																														
MAX	0	MSKCC	GRCh37	14	65544679	65544679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	186	456	0	ENST00000358664.4:c.247C>T	p.Gln83Ter	p.Q83*	ENST00000358664	NM_002382.4	83	Caa/Taa																																																																														
CDH1	0	MSKCC	GRCh37	16	68847276	68847276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	106	356	0	ENST00000261769.5:c.1198G>A	p.Asp400Asn	p.D400N	ENST00000261769	NM_004360.3	400	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	121	261	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SDHB	0	MSKCC	GRCh37	1	17371265	17371265	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs200131173		P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			599	114	225	0	ENST00000375499.3:c.191A>C	p.Asp64Ala	p.D64A	ENST00000375499	NM_003000.2	64	gAc/gCc																																																																														
IGF2	0	MSKCC	GRCh37	11	2154815	2154815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			846	125	410	1	ENST00000434045.2:c.406C>A	p.Leu136Met	p.L136M	ENST00000434045	NM_001127598.1	136	Ctg/Atg																																																																														
FLT1	0	MSKCC	GRCh37	13	28896463	28896463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	55	233	0	ENST00000282397.4:c.2987T>C	p.Met996Thr	p.M996T	ENST00000282397	NM_002019.4	996	aTg/aCg																																																																														
NF1	0	MSKCC	GRCh37	17	29654718	29654718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			623	93	218	0	ENST00000358273.4:c.5470A>G	p.Ile1824Val	p.I1824V	ENST00000358273	NM_001042492.2	1824	Atc/Gtc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63553924	63553924	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	118	293	0	ENST00000307078.5:c.815G>T	p.Arg272Met	p.R272M	ENST00000307078	NM_004655.3	272	aGg/aTg																																																																														
STK11	0	MSKCC	GRCh37	19	1220427	1220427	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	112	380	0	ENST00000326873.7:c.520C>G	p.His174Asp	p.H174D	ENST00000326873	NM_000455.4	174	Cac/Gac																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000317-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			33	100	382	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
CD276	0	MSKCC	GRCh37	15	73994790	73994790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000317-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	52	347	0	ENST00000318443.5:c.274C>T	p.Arg92Cys	p.R92C	ENST00000318443	NM_001024736.1	92	Cgc/Tgc																																																																														
CIC	0	MSKCC	GRCh37	19	42788872	42788872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000317-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	92	383	2	ENST00000575354.2:c.16A>G	p.Arg6Gly	p.R6G	ENST00000575354	NM_015125.3	6	Agg/Ggg																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	320	404	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094461	27094461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			113	132	256	0	ENST00000324856.7:c.3169T>C	p.Ser1057Pro	p.S1057P	ENST00000324856	NM_006015.4	1057	Tct/Cct																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226796	2226796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	25	347	0	ENST00000398665.3:c.4276C>T	p.Leu1426Phe	p.L1426F	ENST00000398665	NM_032482.2	1426	Ctc/Ttc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000347-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	1189	517	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0000347-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	769	585	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
RB1	0	MSKCC	GRCh37	13	48953788	48953788	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0000347-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	212	495	0	ENST00000267163.4:c.1389+2T>C		p.X463_splice	ENST00000267163	NM_000321.2	463																																																																															
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000347-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			537	192	799	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578464	7578464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000347-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	74	450	0	ENST00000269305.4:c.466C>G	p.Arg156Gly	p.R156G	ENST00000269305	NM_001126112.2	156	Cgc/Ggc																																																																														
RAF1	0	MSKCC	GRCh37	3	12627290	12627290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1222	146	472	0	ENST00000251849.4:c.1426C>G	p.Leu476Val	p.L476V	ENST00000251849	NM_002880.3	476	Ctc/Gtc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138382789	138382789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1029	72	331	0	ENST00000289153.2:c.2755G>A	p.Asp919Asn	p.D919N	ENST00000289153	NM_006219.2	919	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0000353-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	135	262	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																														
PALB2	0	MSKCC	GRCh37	16	23641142	23641142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	273	370	0	ENST00000261584.4:c.2333G>A	p.Ser778Asn	p.S778N	ENST00000261584	NM_024675.3	778	aGt/aAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	120	243	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0000383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	180	622	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000408-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	255	316	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
TSHR	0	MSKCC	GRCh37	14	81609311	81609311	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000408-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	137	409	0	ENST00000298171.2:c.909G>C	p.Glu303Asp	p.E303D	ENST00000298171	NM_000369.2	303	gaG/gaC																																																																														
RAD51C	0	MSKCC	GRCh37	17	56774136	56774136	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000408-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	182	535	0	ENST00000337432.4:c.487A>C	p.Ser163Arg	p.S163R	ENST00000337432	NM_058216.2	163	Agt/Cgt																																																																														
BBC3	0	MSKCC	GRCh37	19	47724981	47724981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000408-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1014	73	771	0	ENST00000449228.1:c.763G>A	p.Gly255Arg	p.G255R	ENST00000449228	NM_001127240.2	255	Ggg/Agg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419920	41419920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000408-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			916	259	671	0	ENST00000373198.4:c.401C>T	p.Pro134Leu	p.P134L	ENST00000373198	NM_133170.3	134	cCt/cTt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691953	30691954	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0000408-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			115	143	215	0	ENST00000359013.4:c.529+2dupT		p.X177_splice	ENST00000359013	NM_001024847.2	177																																																																															
PTEN	0	MSKCC	GRCh37	10	89653834	89653834	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000408-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	86	397	0	ENST00000371953.3:c.132delC	p.Val45TyrfsTer9	p.V45Yfs*9	ENST00000371953	NM_000314.4	44	ggC/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000418-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	168	177	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MLL2	0	MSKCC	GRCh37	12	49421790	49421790	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0000418-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	180	535	5	ENST00000301067.7:c.14515+2T>C		p.X4839_splice	ENST00000301067	NM_003482.3	4839																																																																															
PTEN	0	MSKCC	GRCh37	10	89725042	89725042	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0000428-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	226	358	2	ENST00000371953.3:c.1027-2A>G		p.X343_splice	ENST00000371953	NM_000314.4	343																																																																															
PTEN	0	MSKCC	GRCh37	10	89624301	89624306	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GACCTG	GACCTG	-			P-0000428-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	77	130	0	ENST00000371953.3:c.75_79+1delGACCTG		p.X25_splice	ENST00000371953	NM_000314.4	25																																																																															
SPEN	0	MSKCC	GRCh37	1	16202977	16202977	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			819	51	238	1	ENST00000375759.3:c.685C>T	p.Arg229Ter	p.R229*	ENST00000375759	NM_015001.2	229	Cga/Tga																																																																														
TP63	0	MSKCC	GRCh37	3	189607188	189607188	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1122	71	276	0	ENST00000264731.3:c.1567C>T	p.Gln523Ter	p.Q523*	ENST00000264731	NM_003722.4	523	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000464-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	152	392	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																														
JUN	0	MSKCC	GRCh37	1	59247774	59247774	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000464-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1736	134	809	0	ENST00000371222.2:c.969delG	p.Met323IlefsTer2	p.M323Ifs*2	ENST00000371222	NM_002228.3	323	atG/at																																																																														
ROS1	0	MSKCC	GRCh37	6	117746743	117746743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000484-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	65	362	0	ENST00000368508.3:c.77A>G	p.Gln26Arg	p.Q26R	ENST00000368508	NM_002944.2	26	cAg/cGg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44945155	44945155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000484-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	59	333	0	ENST00000377967.4:c.3479G>T	p.Gly1160Val	p.G1160V	ENST00000377967	NM_021140.2	1160	gGc/gTc																																																																														
CTLA4	0	MSKCC	GRCh37	2	204732724	204732724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000509-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			963	533	771	1	ENST00000302823.3:c.59G>A	p.Trp20Ter	p.W20*	ENST00000302823	NM_005214.4	20	tGg/tAg																																																																														
MLL3	0	MSKCC	GRCh37	7	151859653	151859653	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000509-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			551	410	454	0	ENST00000262189.6:c.11009A>C	p.Asn3670Thr	p.N3670T	ENST00000262189	NM_170606.2	3670	aAt/aCt																																																																														
SPEN	0	MSKCC	GRCh37	1	16265862	16265869	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCCTTG	CCTCCTTG	-			P-0000509-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			943	78	720	0	ENST00000375759.3:c.10937_10944del	p.Leu3646GlnfsTer20	p.L3646Qfs*20	ENST00000375759	NM_015001.2	3645	gaCCTCCTTGcc/gacc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000525-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			464	92	319	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000525-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			746	93	486	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259206	36259206	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000525-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			781	77	356	0	ENST00000300305.3:c.285delC	p.Asn96ThrfsTer26	p.N96Tfs*26	ENST00000300305		95	ccC/cc																																																																														
FANCC	0	MSKCC	GRCh37	9	97933379	97933379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000525-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			724	72	392	0	ENST00000289081.3:c.503G>A	p.Gly168Glu	p.G168E	ENST00000289081	NM_000136.2	168	gGa/gAa																																																																														
POLE	0	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000525-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			235	31	145	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																																																														
STK11	0	MSKCC	GRCh37	19	1220502	1220502	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000525-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			630	72	475	0	ENST00000326873.7:c.595G>A	p.Glu199Lys	p.E199K	ENST00000326873	NM_000455.4	199	Gag/Aag																																																																														
EP300	0	MSKCC	GRCh37	22	41545822	41545822	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000525-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			1057	122	599	0	ENST00000263253.7:c.2437C>T	p.Gln813Ter	p.Q813*	ENST00000263253	NM_001429.3	813	Cag/Tag																																																																														
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	194	310	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054935	176054935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			920	129	529	0	ENST00000367669.3:c.1118C>G	p.Ser373Cys	p.S373C	ENST00000367669	NM_022457.5	373	tCt/tGt																																																																														
FAT1	0	MSKCC	GRCh37	4	187584651	187584651	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			982	205	615	0	ENST00000441802.2:c.3382G>C	p.Glu1128Gln	p.E1128Q	ENST00000441802	NM_005245.3	1128	Gag/Cag																																																																														
APC	0	MSKCC	GRCh37	5	112174059	112174059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	67	287	0	ENST00000257430.4:c.2768G>C	p.Arg923Thr	p.R923T	ENST00000257430	NM_000038.5	923	aGa/aCa																																																																														
APC	0	MSKCC	GRCh37	5	112174426	112174426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	51	180	0	ENST00000257430.4:c.3135G>C	p.Gln1045His	p.Q1045H	ENST00000257430	NM_000038.5	1045	caG/caC																																																																														
APC	0	MSKCC	GRCh37	5	112174432	112174432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			343	51	186	0	ENST00000257430.4:c.3141A>C	p.Glu1047Asp	p.E1047D	ENST00000257430	NM_000038.5	1047	gaA/gaC																																																																														
APC	0	MSKCC	GRCh37	5	112178449	112178449	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	169	399	0	ENST00000257430.4:c.7158G>C	p.Lys2386Asn	p.K2386N	ENST00000257430	NM_000038.5	2386	aaG/aaC																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522696	176522696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			548	146	521	0	ENST00000292408.4:c.1793G>C	p.Arg598Pro	p.R598P	ENST00000292408	NM_213647.1	598	cGa/cCa																																																																														
MLL3	0	MSKCC	GRCh37	7	151960169	151960169	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	250	329	0	ENST00000262189.6:c.1231A>T	p.Lys411Ter	p.K411*	ENST00000262189	NM_170606.2	411	Aaa/Taa																																																																														
FGFR1	0	MSKCC	GRCh37	8	38285905	38285905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			741	88	490	0	ENST00000425967.3:c.506C>T	p.Ser169Leu	p.S169L	ENST00000425967	NM_001174067.1	169	tCa/tTa																																																																														
JAK2	0	MSKCC	GRCh37	9	5055729	5055729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	35	265	0	ENST00000381652.3:c.997C>T	p.Gln333Ter	p.Q333*	ENST00000381652	NM_004972.3	333	Caa/Taa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	13	166	0	ENST00000358487.5:c.755C>T	p.Ser252Leu	p.S252L	ENST00000358487	NM_000141.4	252	tCg/tTg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244997	46244997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	267	427	0	ENST00000334344.6:c.3091C>T	p.Gln1031Ter	p.Q1031*	ENST00000334344	NM_152641.2	1031	Cag/Tag																																																																														
MLL2	0	MSKCC	GRCh37	12	49438647	49438647	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	203	355	0	ENST00000301067.7:c.4843C>T	p.Arg1615Ter	p.R1615*	ENST00000301067	NM_003482.3	1615	Cga/Tga																																																																														
IGF1R	0	MSKCC	GRCh37	15	99454587	99454587	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	103	474	0	ENST00000268035.6:c.1506G>C	p.Lys502Asn	p.K502N	ENST00000268035	NM_000875.3	502	aaG/aaC																																																																														
TSC2	0	MSKCC	GRCh37	16	2106696	2106696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			754	185	651	0	ENST00000219476.3:c.700G>A	p.Glu234Lys	p.E234K	ENST00000219476	NM_000548.3	234	Gag/Aag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15973686	15973686	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	213	371	0	ENST00000268712.3:c.4306G>T	p.Glu1436Ter	p.E1436*	ENST00000268712	NM_006311.3	1436	Gag/Tag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2217046	2217046	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			616	65	369	0	ENST00000398665.3:c.2501C>G	p.Ser834Cys	p.S834C	ENST00000398665	NM_032482.2	834	tCc/tGc																																																																														
JAK3	0	MSKCC	GRCh37	19	17943694	17943694	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201241352		P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	163	362	0	ENST00000458235.1:c.2395C>T	p.Arg799Cys	p.R799C	ENST00000458235	NM_000215.3	799	Cgt/Tgt																																																																														
CCNE1	0	MSKCC	GRCh37	19	30303481	30303481	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			56	10	27	0	ENST00000262643.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000262643	NM_001238.2	7	Gag/Tag																																																																														
GNAS	0	MSKCC	GRCh37	20	57470707	57470707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	69	196	0	ENST00000371085.3:c.180G>A	p.Met60Ile	p.M60I	ENST00000371085	NM_000516.4	60	atG/atA																																																																														
MLL3	0	MSKCC	GRCh37	7	151851369	151851369	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	176	348	0	ENST00000262189.6:c.12122delC	p.Pro4041LeufsTer42	p.P4041Lfs*42	ENST00000262189	NM_170606.2	4041	cCt/ct																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TT			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	205	545	0	ENST00000304494.5:c.131_132insAA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TT			P-0000535-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	205	545	0	ENST00000304494.5:c.131_132insAA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	132	302	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																														
KLF4	0	MSKCC	GRCh37	9	110249855	110249855	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	26	145	0	ENST00000374672.4:c.820T>G	p.Cys274Gly	p.C274G	ENST00000374672	NM_004235.4	274	Tgc/Ggc																																																																														
PTEN	0	MSKCC	GRCh37	10	89725047	89725047	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	288	521	0	ENST00000371953.3:c.1030A>T	p.Lys344Ter	p.K344*	ENST00000371953	NM_000314.4	344	Aag/Tag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910866	32910866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	36	302	2	ENST00000380152.3:c.2374T>C	p.Tyr792His	p.Y792H	ENST00000380152		792	Tac/Cac																																																																														
AKT1	0	MSKCC	GRCh37	14	105258970	105258970	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	66	551	0	ENST00000349310.3:c.11T>G	p.Val4Gly	p.V4G	ENST00000349310	NM_001014432.1	4	gTg/gGg																																																																														
BARD1	0	MSKCC	GRCh37	2	215657063	215657063	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	246	452	0	ENST00000260947.4:c.322delT	p.Cys108ValfsTer16	p.C108Vfs*16	ENST00000260947	NM_000465.2	108	Tgt/gt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			858	96	716	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	33	819	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	48	204	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
MPL	0	MSKCC	GRCh37	1	43812465	43812465	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	23	404	1	ENST00000372470.3:c.1168C>T	p.Arg390Cys	p.R390C	ENST00000372470	NM_005373.2	390	Cgc/Tgc																																																																														
RYBP	0	MSKCC	GRCh37	3	72427625	72427625	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	51	422	0	ENST00000477973.2:c.863A>G	p.Ser289Gly	p.S289G	ENST00000477973	NM_012234.5	289	Agc/Ggc																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593601	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	36	707	0	ENST00000288135.5:c.1667A>T	p.Gln556Leu	p.Q556L	ENST00000288135	NM_000222.2	556	cAg/cTg																																																																														
SDHA	0	MSKCC	GRCh37	5	224542	224542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	42	293	0	ENST00000264932.6:c.218G>A	p.Gly73Asp	p.G73D	ENST00000264932	NM_004168.2	73	gGc/gAc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155669	56155669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	51	286	0	ENST00000399503.3:c.761G>A	p.Gly254Asp	p.G254D	ENST00000399503	NM_005921.1	254	gGc/gAc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591145	67591145	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	50	272	0	ENST00000274335.5:c.1738T>A	p.Tyr580Asn	p.Y580N	ENST00000274335		580	Tac/Aac																																																																														
DAXX	0	MSKCC	GRCh37	6	33288800	33288800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200273259		P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	22	214	0	ENST00000374542.5:c.752G>A	p.Arg251His	p.R251H	ENST00000374542	NM_001141970.1	251	cGt/cAt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			97	26	236	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495646	56495646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	20	387	0	ENST00000267101.3:c.3836T>C	p.Met1279Thr	p.M1279T	ENST00000267101	NM_001982.3	1279	aTg/aCg																																																																														
POLE	0	MSKCC	GRCh37	12	133202239	133202239	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	35	432	1	ENST00000320574.5:c.6649C>T	p.Gln2217Ter	p.Q2217*	ENST00000320574	NM_006231.2	2217	Cag/Tag																																																																														
SMAD3	0	MSKCC	GRCh37	15	67479811	67479811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	36	523	0	ENST00000327367.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000327367	NM_005902.3	373	cGc/cAc																																																																														
TSC2	0	MSKCC	GRCh37	16	2136805	2136805	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	41	548	0	ENST00000219476.3:c.4922T>C	p.Leu1641Pro	p.L1641P	ENST00000219476	NM_000548.3	1641	cTg/cCg																																																																														
CDH1	0	MSKCC	GRCh37	16	68835797	68835797	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	35	548	0	ENST00000261769.5:c.387+1G>A		p.X129_splice	ENST00000261769	NM_004360.3	129																																																																															
DOT1L	84444	MSKCC	GRCh37	19	2216560	2216560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777525091		P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	24	498	0	ENST00000398665.3:c.2204C>T	p.Thr735Met	p.T735M	ENST00000398665	NM_032482.2	735	aCg/aTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11135064	11135064	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	32	303	0	ENST00000344626.4:c.3031A>G	p.Met1011Val	p.M1011V	ENST00000344626	NM_003072.3	1011	Atg/Gtg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089706	27089706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	18	359	1	ENST00000324856.7:c.2666delG	p.Gly889AlafsTer2	p.G889Afs*2	ENST00000324856	NM_006015.4	888	Ggg/gg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	33	335	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
JAK1	0	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			814	64	538	4	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100171	157100172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			45	11	7	0	ENST00000346085.5:c.1114dupC	p.Arg372ProfsTer163	p.R372Pfs*163	ENST00000346085	NM_020732.3	370	tcc/tCcc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372193	55372194	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			153	22	100	0	ENST00000297316.4:c.885_886delGT	p.Tyr296LeufsTer68	p.Y296Lfs*68	ENST00000297316	NM_022454.3	295	GTg/g																																																																														
TSC2	0	MSKCC	GRCh37	16	2121791	2121792	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			191	17	456	0	ENST00000219476.3:c.1959_1960delAG	p.Gly654LeufsTer2	p.G654Lfs*2	ENST00000219476	NM_000548.3	651	ccAGag/ccag																																																																														
TRAF7	0	MSKCC	GRCh37	16	2220615	2220615	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	29	674	0	ENST00000326181.6:c.237delC	p.Ile80SerfsTer48	p.I80Sfs*48	ENST00000326181	NM_032271.2	78	Ccc/cc																																																																														
AR	0	MSKCC	GRCh37	X	66765667	66765667	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	73	1113	1	ENST00000374690.3:c.683delG	p.Gly228AlafsTer30	p.G228Afs*30	ENST00000374690	NM_000044.3	227	Ggg/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0000575-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1321	119	599	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000575-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	142	252	1	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2217792	2217792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000575-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			938	112	501	0	ENST00000398665.3:c.2566G>A	p.Gly856Ser	p.G856S	ENST00000398665	NM_032482.2	856	Ggc/Agc																																																																														
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0000575-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	228	532	1	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916938	178916939	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAGAAA			P-0000575-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			944	98	323	0	ENST00000263967.3:c.327_332dupAGAAAA	p.Glu110_Lys111dup	p.E110_K111dup	ENST00000263967	NM_006218.2	110	gaa/gAAGAAAaa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67593378	67593383	+	inframe_deletion	In_Frame_Del	DEL	CTCCCT	CTCCCT	-			P-0000575-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			957	101	452	0	ENST00000274335.5:c.2125_2130delTCCCTC	p.Ser709_Leu710del	p.S709_L710del	ENST00000274335		708	gaCTCCCTc/gac																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000578-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			857	98	298	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115956	8115956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			241	69	192	0	ENST00000346208.3:c.1305delC	p.Ser436ProfsTer39	p.S436Pfs*39	ENST00000346208		434	caC/ca																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			977	641	331	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	599	480	0	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528031	157528031	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	84	154	0	ENST00000346085.5:c.5756T>A	p.Leu1919Gln	p.L1919Q	ENST00000346085	NM_020732.3	1919	cTg/cAg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245419	41245419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	308	481	0	ENST00000357654.3:c.2129C>T	p.Thr710Ile	p.T710I	ENST00000357654	NM_007294.3	710	aCt/aTt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2216376	2216376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	101	286	0	ENST00000398665.3:c.2020C>T	p.Arg674Cys	p.R674C	ENST00000398665	NM_032482.2	674	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578244	7578261	+	inframe_deletion	In_Frame_Del	DEL	CGCAAATTTCCTTCCACT	CGCAAATTTCCTTCCACT	-			P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	255	517	0	ENST00000269305.4:c.588_605delAGTGGAAGGAAATTTGCG	p.Gly199_Glu204del	p.G199_E204del	ENST00000269305	NM_001126112.2	196	cgAGTGGAAGGAAATTTGCGt/cgt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0000616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	188	218	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																														
IKBKE	0	MSKCC	GRCh37	1	206647803	206647803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000642-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			595	90	269	2	ENST00000367120.3:c.217G>T	p.Val73Leu	p.V73L	ENST00000367120	NM_014002.3	73	Gtg/Ttg																																																																														
RB1	0	MSKCC	GRCh37	13	48878186	48878186	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0000642-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	14	53	0	ENST00000267163.4:c.137+1G>C		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																															
BCOR	0	MSKCC	GRCh37	X	39933093	39933093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000642-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			649	51	351	0	ENST00000378444.4:c.1506C>G	p.Ile502Met	p.I502M	ENST00000378444	NM_001123385.1	502	atC/atG																																																																														
BCOR	0	MSKCC	GRCh37	X	39933115	39933115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000642-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	48	334	0	ENST00000378444.4:c.1484C>G	p.Ala495Gly	p.A495G	ENST00000378444	NM_001123385.1	495	gCt/gGt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0000642-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			744	1006	400	0	ENST00000275493.2:c.2317_2319dupCAC	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000642-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	238	344	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223345	53223348	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0000642-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	86	304	0	ENST00000375401.3:c.4011_4014delAGAG	p.Glu1338AlafsTer19	p.E1338Afs*19	ENST00000375401	NM_004187.3	1337	agAGAG/ag																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852628	63852628	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1104	548	529	0	ENST00000279873.7:c.3406A>G	p.Asn1136Asp	p.N1136D	ENST00000279873	NM_032199.2	1136	Aat/Gat																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	431	413	1	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																														
NF1	0	MSKCC	GRCh37	17	29665722	29665722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			613	311	658	0	ENST00000358273.4:c.6820G>A	p.Ala2274Thr	p.A2274T	ENST00000358273	NM_001042492.2	2274	Gca/Aca																																																																														
KDM6A	0	MSKCC	GRCh37	X	44941836	44941838	+	frameshift_variant	Frame_Shift_Del	DEL	AGA	AGA	GC			P-0000659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	545	477	0	ENST00000377967.4:c.3160_3162delAGAinsGC	p.Arg1054AlafsTer29	p.R1054Afs*29	ENST00000377967	NM_021140.2	1054	AGA/GC																																																																														
FOXP1	0	MSKCC	GRCh37	3	71096227	71096227	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	159	118	0	ENST00000318789.4:c.530A>T	p.Gln177Leu	p.Q177L	ENST00000318789	NM_032682.5	177	cAg/cTg																																																																														
MDC1	0	MSKCC	GRCh37	6	30670958	30670958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			573	36	240	0	ENST00000376406.3:c.5788C>A	p.Arg1930Ser	p.R1930S	ENST00000376406	NM_014641.2	1930	Cgc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7579347	7579352	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGC	AGAAGC	CA			P-0000669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	126	196	0	ENST00000269305.4:c.335_340delGCTTCTinsTG	p.Gly112ValfsTer10	p.G112Vfs*10	ENST00000269305	NM_001126112.2	112	gGCTTCTtg/gTGtg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911334	32911335	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	94	225	0	ENST00000380152.3:c.2845dupT	p.Tyr949LeufsTer10	p.Y949Lfs*10	ENST00000380152		948	gtt/gTtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			799	151	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	99	285	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	44	77	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
JAK1	0	MSKCC	GRCh37	1	65313289	65313289	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			604	159	482	0	ENST00000342505.4:c.1825G>T	p.Glu609Ter	p.E609*	ENST00000342505	NM_002227.2	609	Gaa/Taa																																																																														
MCL1	0	MSKCC	GRCh37	1	150551981	150551981	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1113	142	412	0	ENST00000369026.2:c.26T>C	p.Val9Ala	p.V9A	ENST00000369026	NM_021960.4	9	gTa/gCa																																																																														
GATA2	0	MSKCC	GRCh37	3	128202719	128202719	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	76	267	0	ENST00000341105.2:c.1001A>C	p.Lys334Thr	p.K334T	ENST00000341105	NM_032638.4	334	aAg/aCg																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			598	115	324	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
RAD52	0	MSKCC	GRCh37	12	1023246	1023246	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184776294		P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	63	203	0	ENST00000358495.3:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000358495	NM_134424.2	337	Gat/Aat																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911691	32911691	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	72	212	0	ENST00000380152.3:c.3199A>T	p.Thr1067Ser	p.T1067S	ENST00000380152		1067	Act/Tct																																																																														
RBM10	0	MSKCC	GRCh37	X	47006893	47006893	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	88	152	0	ENST00000329236.7:c.13A>T	p.Arg5Ter	p.R5*	ENST00000329236	NM_001204466.1	5	Aga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173847	112173848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	55	233	0	ENST00000257430.4:c.2563_2564dup	p.Arg856AsnfsTer6	p.R856Nfs*6	ENST00000257430	NM_000038.5	852	-/GA																																																																														
TBX3	0	MSKCC	GRCh37	12	115112292	115112293	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	31	50	0	ENST00000257566.3:c.1447dupA	p.Thr483AsnfsTer209	p.T483Nfs*209	ENST00000257566	NM_016569.3	483	acg/aAcg																																																																														
APC	0	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000699-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	213	337	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000699-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	186	238	0	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt																																																																														
DICER1	0	MSKCC	GRCh37	14	95557629	95557629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000699-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	231	332	0	ENST00000343455.3:c.5438A>G	p.Glu1813Gly	p.E1813G	ENST00000343455	NM_177438.2	1813	gAg/gGg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226290	2226290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000699-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	137	396	0	ENST00000398665.3:c.3770C>T	p.Ala1257Val	p.A1257V	ENST00000398665	NM_032482.2	1257	gCg/gTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117883	70117903	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGCGCAGGAAGCTCGC	GGCGGCGCGCAGGAAGCTCGC	-			P-0000699-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	65	180	0	ENST00000245479.2:c.353_373delCGGCGCGCAGGAAGCTCGCGG	p.Ala118_Ala124del	p.A118_A124del	ENST00000245479	NM_000346.3	117	caGGCGGCGCGCAGGAAGCTCGCg/cag																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803166	1803166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000730-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			639	77	417	0	ENST00000260795.2:c.518G>A	p.Arg173His	p.R173H	ENST00000260795		173	cGc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89653808	89653808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000730-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			560	53	332	0	ENST00000371953.3:c.106G>A	p.Gly36Arg	p.G36R	ENST00000371953	NM_000314.4	36	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0000730-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	219	235	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000737-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	85	193	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0000737-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	68	213	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0000737-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	72	84	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714388	40714388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000737-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	59	142	0	ENST00000373198.4:c.4009C>T	p.Arg1337Cys	p.R1337C	ENST00000373198	NM_133170.3	1337	Cgc/Tgc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000743-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	109	250	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000743-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	115	197	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
ATM	0	MSKCC	GRCh37	11	108098534	108098534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000743-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	17	157	0	ENST00000278616.4:c.104G>A	p.Arg35Gln	p.R35Q	ENST00000278616	NM_000051.3	35	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	147	434	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			115	44	269	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
SETD2	0	MSKCC	GRCh37	3	47162686	47162686	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	115	622	0	ENST00000409792.3:c.3440A>T	p.Gln1147Leu	p.Q1147L	ENST00000409792	NM_014159.6	1147	cAg/cTg																																																																														
FLT4	0	MSKCC	GRCh37	5	180057230	180057230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			66	42	186	0	ENST00000261937.6:c.508C>T	p.Arg170Cys	p.R170C	ENST00000261937	NM_182925.4	170	Cgc/Tgc																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056113	26056113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	117	278	0	ENST00000343677.2:c.544C>G	p.Pro182Ala	p.P182A	ENST00000343677	NM_005319.3	182	Ccc/Gcc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499739	8499739	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	81	394	0	ENST00000356435.5:c.2230A>C	p.Ile744Leu	p.I744L	ENST00000356435		744	Ata/Cta																																																																														
NTRK2	0	MSKCC	GRCh37	9	87482282	87482282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000756-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	106	470	0	ENST00000277120.3:c.1569G>T	p.Lys523Asn	p.K523N	ENST00000277120		523	aaG/aaT																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			66	396	236	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	337	339	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	40	118	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691776	30691776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	82	333	0	ENST00000359013.4:c.353A>G	p.Glu118Gly	p.E118G	ENST00000359013	NM_001024847.2	118	gAg/gGg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133805	55133805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			89	388	454	0	ENST00000257290.5:c.1018C>T	p.Arg340Trp	p.R340W	ENST00000257290	NM_006206.4	340	Cgg/Tgg																																																																														
PMS2	0	MSKCC	GRCh37	7	6043665	6043665	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	65	415	0	ENST00000265849.7:c.188T>C	p.Val63Ala	p.V63A	ENST00000265849	NM_000535.5	63	gTg/gCg																																																																														
BRAF	0	MSKCC	GRCh37	7	140454008	140454008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	118	268	1	ENST00000288602.6:c.1720C>T	p.His574Tyr	p.H574Y	ENST00000288602	NM_004333.4	574	Cac/Tac																																																																														
TET1	0	MSKCC	GRCh37	10	70332414	70332414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	505	434	0	ENST00000373644.4:c.319C>T	p.Arg107Ter	p.R107*	ENST00000373644	NM_030625.2	107	Cga/Tga																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266074	41266097	+	inframe_deletion	In_Frame_Del	DEL	ACTGGCAGCAACAGTCTTACCTGG	ACTGGCAGCAACAGTCTTACCTGG	-			P-0000763-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	180	330	0	ENST00000349496.5:c.74_97del	p.Trp25_Asp32del	p.W25_D32del	ENST00000349496	NM_001904.3	24	cACTGGCAGCAACAGTCTTACCTGGac/cac																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12028690	12028690	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0000778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	141	306	0	ENST00000353533.5:c.891+2T>A		p.X297_splice	ENST00000353533	NM_003010.3	297																																																																															
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000824-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	50	498	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47125702	47125709	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGAGTG	GTTGAGTG	-			P-0000824-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	82	422	0	ENST00000409792.3:c.5561_5568del	p.Pro1854HisfsTer3	p.P1854Hfs*3	ENST00000409792	NM_014159.6	1854	cCACTCAAC/c																																																																														
BAP1	0	MSKCC	GRCh37	3	52436417	52436417	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000824-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	18	261	0	ENST00000460680.1:c.2077del	p.Glu693SerfsTer43	p.E693Sfs*43	ENST00000460680	NM_004656.3	693	Gag/ag																																																																														
MET	0	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0000838-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	52	96	0	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
NF1	0	MSKCC	GRCh37	17	29687605	29687605	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000838-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	39	238	0	ENST00000358273.4:c.8263del	p.Leu2755SerfsTer2	p.L2755Sfs*2	ENST00000358273	NM_001042492.2	2754	tCc/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	11	99	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	28	58	0	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
TP53	0	MSKCC	GRCh37	17	7579355	7579355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	43	137	1	ENST00000269305.4:c.332T>C	p.Leu111Pro	p.L111P	ENST00000269305	NM_001126112.2	111	cTg/cCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0000870-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	27	129	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
GATA3	0	MSKCC	GRCh37	10	8106036	8106036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000870-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	18	126	0	ENST00000346208.3:c.856G>A	p.Ala286Thr	p.A286T	ENST00000346208		286	Gcc/Acc																																																																														
MLL	0	MSKCC	GRCh37	11	118374780	118374780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000870-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	36	132	0	ENST00000534358.1:c.8173G>A	p.Asp2725Asn	p.D2725N	ENST00000534358	NM_005933.3	2725	Gat/Aat																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000887-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	144	373	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209283	98209283	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139942632		P-0000887-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			627	65	610	0	ENST00000331920.6:c.4255C>T	p.Arg1419Trp	p.R1419W	ENST00000331920	NM_000264.3	1419	Cgg/Tgg																																																																														
LATS2	0	MSKCC	GRCh37	13	21562135	21562135	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000887-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	118	1004	2	ENST00000382592.4:c.1784A>G	p.Lys595Arg	p.K595R	ENST00000382592	NM_014572.2	595	aAg/aGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0000887-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	75	600	0	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																														
CTCF	0	MSKCC	GRCh37	16	67645511	67645519	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAAAGGTA	AGAAAGGTA	G			P-0000887-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	17	55	0	ENST00000264010.4:c.776_781+3delinsG		p.X259_splice	ENST00000264010	NM_006565.3	259																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0000902-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	272	503	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105761	27105761	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000902-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	120	267	0	ENST00000324856.7:c.5372C>G	p.Ser1791Ter	p.S1791*	ENST00000324856	NM_006015.4	1791	tCa/tGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	92	265	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12013691	12013691	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0000921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	151	276	0	ENST00000353533.5:c.634-1G>C		p.X212_splice	ENST00000353533	NM_003010.3	212																																																																															
EPCAM	0	MSKCC	GRCh37	2	47601095	47601095	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000925-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	112	147	0	ENST00000263735.4:c.333C>G	p.Asn111Lys	p.N111K	ENST00000263735	NM_002354.2	111	aaC/aaG																																																																														
FOXP1	0	MSKCC	GRCh37	3	71064736	71064736	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000925-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	302	241	0	ENST00000318789.4:c.938G>C	p.Cys313Ser	p.C313S	ENST00000318789	NM_032682.5	313	tGt/tCt																																																																														
PALB2	0	MSKCC	GRCh37	16	23646341	23646341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000925-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			680	169	434	0	ENST00000261584.4:c.1526G>C	p.Gly509Ala	p.G509A	ENST00000261584	NM_024675.3	509	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0000925-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	197	160	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942034	44942036	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AGT	AGT	-			P-0000925-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	262	345	0	ENST00000377967.4:c.3284+1_3284+3del		p.X1095_splice	ENST00000377967	NM_021140.2	1095																																																																															
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	155	146	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0000994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	134	344	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604756	48604756	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	147	304	0	ENST00000342988.3:c.1578A>C	p.Glu526Asp	p.E526D	ENST00000342988	NM_005359.5	526	gaA/gaC																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55136856	55136856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001098-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	50	567	0	ENST00000257290.5:c.1178C>T	p.Thr393Ile	p.T393I	ENST00000257290	NM_006206.4	393	aCt/aTt																																																																														
HGF	0	MSKCC	GRCh37	7	81372701	81372701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001098-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			714	38	498	0	ENST00000222390.5:c.833C>A	p.Thr278Asn	p.T278N	ENST00000222390	NM_000601.4	278	aCc/aAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115916	8115916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001098-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	58	269	0	ENST00000346208.3:c.1262C>T	p.Pro421Leu	p.P421L	ENST00000346208		421	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578181	7578181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001098-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	86	599	0	ENST00000269305.4:c.668C>T	p.Pro223Leu	p.P223L	ENST00000269305	NM_001126112.2	223	cCt/cTt																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001098-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	97	367	2	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																														
CIC	0	MSKCC	GRCh37	19	42793517	42793517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001098-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	30	273	0	ENST00000575354.2:c.1319G>T	p.Arg440Leu	p.R440L	ENST00000575354	NM_015125.3	440	cGc/cTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001123-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			812	569	389	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001123-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			826	448	479	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001123-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			516	101	212	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																														
MET	0	MSKCC	GRCh37	7	116339203	116339203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001123-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			740	232	403	0	ENST00000397752.3:c.65G>A	p.Ser22Asn	p.S22N	ENST00000397752	NM_000245.2	22	aGc/aAc																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0001136-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			628	150	508	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
MTOR	0	MSKCC	GRCh37	1	11272925	11272925	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001136-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			788	96	301	0	ENST00000361445.4:c.3326A>G	p.Asp1109Gly	p.D1109G	ENST00000361445	NM_004958.3	1109	gAc/gGc																																																																														
ROS1	0	MSKCC	GRCh37	6	117662667	117662667	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001136-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			918	152	449	0	ENST00000368508.3:c.4798C>A	p.Leu1600Met	p.L1600M	ENST00000368508	NM_002944.2	1600	Ctg/Atg																																																																														
KLF4	0	MSKCC	GRCh37	9	110251261	110251261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001136-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	125	397	0	ENST00000374672.4:c.76G>A	p.Gly26Ser	p.G26S	ENST00000374672	NM_004235.4	26	Ggc/Agc																																																																														
CIC	0	MSKCC	GRCh37	19	42796518	42796537	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGGAACAGTCACCTCGT	GGCTGGAACAGTCACCTCGT	C			P-0001136-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			612	46	412	0	ENST00000575354.2:c.3075_3094delGGCTGGAACAGTCACCTCGTinsC	p.Gln1025HisfsTer8	p.Q1025Hfs*8	ENST00000575354	NM_015125.3	1025	caGGCTGGAACAGTCACCTCGTac/caCac																																																																														
TSC1	0	MSKCC	GRCh37	9	135777009	135777011	+	stop_gained	Nonsense_Mutation	ONP	GTG	GTG	CTA			P-0001136-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			657	128	435	0	ENST00000298552.3:c.2467_2469delCACinsTAG	p.His823Ter	p.H823*	ENST00000298552	NM_001162426.1	823	CAC/TAG																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001146-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			869	24	428	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
HRAS	0	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001179-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	197	566	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
ATM	0	MSKCC	GRCh37	11	108205766	108205766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001179-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	107	549	0	ENST00000278616.4:c.8081G>A	p.Gly2694Glu	p.G2694E	ENST00000278616	NM_000051.3	2694	gGa/gAa																																																																														
ATRX	0	MSKCC	GRCh37	X	76939075	76939075	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001179-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	129	767	0	ENST00000373344.5:c.1673del	p.Ser558IlefsTer4	p.S558Ifs*4	ENST00000373344	NM_000489.3	558	aGt/at																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	5832	311	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
ALK	0	MSKCC	GRCh37	2	29455301	29455301	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			34	341	348	0	ENST00000389048.3:c.2501T>C	p.Val834Ala	p.V834A	ENST00000389048	NM_004304.4	834	gTg/gCg																																																																														
PMS1	0	MSKCC	GRCh37	2	190718731	190718731	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs146040262		P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	615	471	0	ENST00000441310.2:c.889C>G	p.Leu297Val	p.L297V	ENST00000441310	NM_000534.4	297	Ctg/Gtg																																																																														
IRS1	0	MSKCC	GRCh37	2	227662745	227662745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	467	323	0	ENST00000305123.5:c.710G>T	p.Trp237Leu	p.W237L	ENST00000305123	NM_005544.2	237	tGg/tTg																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794105	242794105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	183	388	0	ENST00000334409.5:c.623C>A	p.Pro208His	p.P208H	ENST00000334409	NM_005018.2	208	cCc/cAc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643372	52643372	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			89	504	618	0	ENST00000394830.3:c.2524G>T	p.Glu842Ter	p.E842*	ENST00000394830	NM_018313.4	842	Gag/Tag																																																																														
HGF	0	MSKCC	GRCh37	7	81386551	81386551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	390	356	0	ENST00000222390.5:c.436G>T	p.Gly146Cys	p.G146C	ENST00000222390	NM_000601.4	146	Ggc/Tgc																																																																														
TET1	0	MSKCC	GRCh37	10	70446141	70446141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	204	293	1	ENST00000373644.4:c.5081G>A	p.Arg1694His	p.R1694H	ENST00000373644	NM_030625.2	1694	cGc/cAc																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870898	12870898	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200422211		P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	426	268	0	ENST00000228872.4:c.125C>T	p.Thr42Ile	p.T42I	ENST00000228872	NM_004064.3	42	aCc/aTc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495661	56495661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			670	144	285	0	ENST00000267101.3:c.3851C>T	p.Ala1284Val	p.A1284V	ENST00000267101	NM_001982.3	1284	gCa/gTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858613	9858613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	242	639	0	ENST00000330684.3:c.2788C>A	p.Leu930Ile	p.L930I	ENST00000330684	NM_001134407.1	930	Ctc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			38	436	323	1	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141515	11141515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			37	326	407	1	ENST00000344626.4:c.3492C>A	p.Asn1164Lys	p.N1164K	ENST00000344626	NM_003072.3	1164	aaC/aaA																																																																														
BRD4	0	MSKCC	GRCh37	19	15353917	15353917	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			10	81	106	0	ENST00000263377.2:c.2963A>T	p.Gln988Leu	p.Q988L	ENST00000263377	NM_058243.2	988	cAg/cTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40757404	40757404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	170	414	0	ENST00000373198.4:c.2894A>G	p.Asn965Ser	p.N965S	ENST00000373198	NM_133170.3	965	aAc/aGc																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41750521	41750522	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	307	380	0	ENST00000226382.2:c.106dup	p.Cys36LeufsTer10	p.C36Lfs*10	ENST00000226382	NM_003924.3	36	tgc/tTgc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714439	40714441	+	missense_variant	Missense_Mutation	ONP	CCT	CCT	TCC			P-0001189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	106	269	0	ENST00000373198.4:c.3956_3958delinsGGA	p.Gln1319_Val1320delinsArgMet	p.Q1319_V1320delinsRM	ENST00000373198	NM_133170.3	1319	cAGGtg/cGGAtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	193	515	4	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	125	699	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138409963	138409963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	65	348	0	ENST00000289153.2:c.1915C>G	p.Leu639Val	p.L639V	ENST00000289153	NM_006219.2	639	Ctt/Gtt																																																																														
FAT1	0	MSKCC	GRCh37	4	187540239	187540239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	59	618	0	ENST00000441802.2:c.7501C>G	p.Leu2501Val	p.L2501V	ENST00000441802	NM_005245.3	2501	Cta/Gta																																																																														
RICTOR	0	MSKCC	GRCh37	5	38944651	38944651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	49	378	0	ENST00000357387.3:c.4810G>A	p.Asp1604Asn	p.D1604N	ENST00000357387	NM_152756.3	1604	Gat/Aat																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32171636	32171636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	38	475	0	ENST00000375023.3:c.3142G>A	p.Asp1048Asn	p.D1048N	ENST00000375023	NM_004557.3	1048	Gac/Aac																																																																														
MLL	0	MSKCC	GRCh37	11	118344797	118344797	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	71	627	0	ENST00000534358.1:c.2923G>C	p.Asp975His	p.D975H	ENST00000534358	NM_005933.3	975	Gac/Cac																																																																														
ERCC4	0	MSKCC	GRCh37	16	14024740	14024740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	84	404	0	ENST00000311895.7:c.966G>C	p.Gln322His	p.Q322H	ENST00000311895	NM_005236.2	322	caG/caC																																																																														
PALB2	0	MSKCC	GRCh37	16	23646591	23646591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	50	355	0	ENST00000261584.4:c.1276G>C	p.Glu426Gln	p.E426Q	ENST00000261584	NM_024675.3	426	Gag/Cag																																																																														
JAK3	0	MSKCC	GRCh37	19	17952321	17952321	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	48	464	0	ENST00000458235.1:c.1019C>G	p.Ser340Trp	p.S340W	ENST00000458235	NM_000215.3	340	tCg/tGg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735547	40735547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	66	340	0	ENST00000373198.4:c.3326G>T	p.Arg1109Leu	p.R1109L	ENST00000373198	NM_133170.3	1109	cGg/cTg																																																																														
ATRX	0	MSKCC	GRCh37	X	76855256	76855256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	60	943	0	ENST00000373344.5:c.5731A>G	p.Ile1911Val	p.I1911V	ENST00000373344	NM_000489.3	1911	Ata/Gta																																																																														
STAG2	0	MSKCC	GRCh37	X	123217317	123217317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001199-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	77	782	0	ENST00000218089.9:c.2971A>G	p.Ser991Gly	p.S991G	ENST00000218089	NM_001042749.1	991	Agc/Ggc																																																																														
APC	0	MSKCC	GRCh37	5	112174742	112174742	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001200-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	70	345	0	ENST00000257430.4:c.3451G>T	p.Glu1151Ter	p.E1151*	ENST00000257430	NM_000038.5	1151	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001200-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	82	749	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001200-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			717	42	457	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158551	26158551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001204-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			434	144	243	0	ENST00000289316.2:c.154G>C	p.Asp52His	p.D52H	ENST00000289316	NM_138720.2	52	Gac/Cac																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001204-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			477	185	437	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																														
NF1	0	MSKCC	GRCh37	17	29527594	29527594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001204-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			340	66	339	0	ENST00000358273.4:c.1043C>T	p.Ser348Phe	p.S348F	ENST00000358273	NM_001042492.2	348	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	269	532	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
TET1	0	MSKCC	GRCh37	10	70333135	70333135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	242	553	0	ENST00000373644.4:c.1040A>G	p.Glu347Gly	p.E347G	ENST00000373644	NM_030625.2	347	gAg/gGg																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988249	36988249	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	18	176	0	ENST00000354822.5:c.404G>T	p.Arg135Met	p.R135M	ENST00000354822	NM_001079668.2	135	aGg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			556	275	519	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061137	38061167	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCG	GCCCCCGCTTCCGCTCCCGCCCCCGCCGCCG	-			P-0001221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			60	122	93	1	ENST00000250448.2:c.822_852del	p.Gly275AlafsTer36	p.G275Afs*36	ENST00000250448	NM_004496.3	274	gcCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGC/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0001227-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			962	62	452	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001227-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	28	176	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
RAD50	0	MSKCC	GRCh37	5	131972824	131972824	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001227-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	36	305	0	ENST00000265335.6:c.3407A>G	p.His1136Arg	p.H1136R	ENST00000265335		1136	cAc/cGc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530055	212530055	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001230-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	159	272	0	ENST00000342788.4:c.1864A>T	p.Thr622Ser	p.T622S	ENST00000342788	NM_005235.2	622	Acc/Tcc																																																																														
MLH1	0	MSKCC	GRCh37	3	37048544	37048544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001230-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	136	331	0	ENST00000231790.2:c.443C>T	p.Thr148Ile	p.T148I	ENST00000231790	NM_000249.3	148	aCc/aTc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001230-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	193	529	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001254-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			165	397	660	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
MDC1	0	MSKCC	GRCh37	6	30672980	30672980	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001260-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			781	145	463	0	ENST00000376406.3:c.3980C>G	p.Pro1327Arg	p.P1327R	ENST00000376406	NM_014641.2	1327	cCc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001260-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	70	288	0	ENST00000269305.4:c.97-1G>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
SMAD4	0	MSKCC	GRCh37	18	48591933	48591933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001260-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			777	73	400	0	ENST00000342988.3:c.1096C>A	p.Gln366Lys	p.Q366K	ENST00000342988	NM_005359.5	366	Caa/Aaa																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	126	166	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	157	236	0	ENST00000281708.4:c.1436G>C	p.Arg479Pro	p.R479P	ENST00000281708	NM_033632.3	479	cGa/cCa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52610650	52610650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	26	551	0	ENST00000394830.3:c.3523G>A	p.Glu1175Lys	p.E1175K	ENST00000394830	NM_018313.4	1175	Gaa/Aaa																																																																														
TP63	0	MSKCC	GRCh37	3	189590669	189590669	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	249	369	0	ENST00000264731.3:c.1234G>C	p.Glu412Gln	p.E412Q	ENST00000264731	NM_003722.4	412	Gaa/Caa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245543	153245543	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	206	237	0	ENST00000281708.4:c.1648G>C	p.Asp550His	p.D550H	ENST00000281708	NM_033632.3	550	Gat/Cat																																																																														
MLL3	0	MSKCC	GRCh37	7	151856077	151856077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			57	268	591	0	ENST00000262189.6:c.11541G>C	p.Lys3847Asn	p.K3847N	ENST00000262189	NM_170606.2	3847	aaG/aaC																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			31	225	308	0	ENST00000304494.5:c.457+1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2A	0	MSKCC	GRCh37	9	21970900	21970900	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			31	225	308	0	ENST00000304494.5:c.457+1G>T		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
TSC1	0	MSKCC	GRCh37	9	135781386	135781386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			26	249	298	2	ENST00000298552.3:c.1579C>T	p.Gln527Ter	p.Q527*	ENST00000298552	NM_001162426.1	527	Cag/Tag																																																																														
GATA3	0	MSKCC	GRCh37	10	8097634	8097634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	98	200	0	ENST00000346208.3:c.16G>C	p.Asp6His	p.D6H	ENST00000346208		6	Gac/Cac																																																																														
GATA3	0	MSKCC	GRCh37	10	8100646	8100646	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1778076		P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	248	575	0	ENST00000346208.3:c.620C>A	p.Ala207Asp	p.A207D	ENST00000346208		207	gCc/gAc																																																																														
KDM5A	0	MSKCC	GRCh37	12	404780	404780	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	255	428	0	ENST00000399788.2:c.4414A>T	p.Thr1472Ser	p.T1472S	ENST00000399788	NM_001042603.1	1472	Aca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			37	189	212	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257845	19257845	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	240	422	0	ENST00000162023.5:c.541G>T	p.Gly181Cys	p.G181C	ENST00000162023		181	Ggc/Tgc																																																																														
RBM10	0	MSKCC	GRCh37	X	47028806	47028806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	221	566	2	ENST00000329236.7:c.110G>T	p.Arg37Leu	p.R37L	ENST00000329236	NM_001204466.1	37	cGg/cTg																																																																														
RBM10	0	MSKCC	GRCh37	X	47028885	47028885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	124	288	0	ENST00000329236.7:c.189G>T	p.Glu63Asp	p.E63D	ENST00000329236	NM_001204466.1	63	gaG/gaT																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794906	242794906	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	220	310	1	ENST00000334409.5:c.303del	p.Asn102ThrfsTer7	p.N102Tfs*7	ENST00000334409	NM_005018.2	101	ccC/cc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513213	106513213	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001283-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	331	217	0	ENST00000359195.3:c.2118del	p.Arg707AspfsTer9	p.R707Dfs*9	ENST00000359195	NM_002649.2	706	tCc/tc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	175	276	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0001296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	39	248	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45391499	45391499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	43	342	0	ENST00000262160.6:c.661C>T	p.Pro221Ser	p.P221S	ENST00000262160	NM_005901.5	221	Cca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001301-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	402	276	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812298	212812298	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001301-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	131	287	0	ENST00000342788.4:c.278A>T	p.Gln93Leu	p.Q93L	ENST00000342788	NM_005235.2	93	cAg/cTg																																																																														
CDH1	0	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0001301-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	467	221	0	ENST00000261769.5:c.1565+1G>A		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001304-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			898	53	340	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MDC1	0	MSKCC	GRCh37	6	30671004	30671005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001304-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	24	295	1	ENST00000376406.3:c.5741dup	p.Ser1915LysfsTer15	p.S1915Kfs*15	ENST00000376406	NM_014641.2	1914	gga/ggGa																																																																														
KIT	0	MSKCC	GRCh37	4	55595596	55595596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001319-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			320	17	323	0	ENST00000288135.5:c.2086G>T	p.Asp696Tyr	p.D696Y	ENST00000288135	NM_000222.2	696	Gat/Tat																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591300	67591330	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATGAAAACACTGAAGAGTAAGTAGTTACTA	AATGAAAACACTGAAGAGTAAGTAGTTACTA	-			P-0001319-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			249	39	207	0	ENST00000274335.5:c.1800_1814+16del		p.X600_splice	ENST00000274335		600																																																																															
GPS2	0	MSKCC	GRCh37	17	7217858	7217858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001319-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			818	151	897	0	ENST00000380728.2:c.153del	p.Lys52ArgfsTer11	p.K52Rfs*11	ENST00000380728		51	agG/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587780066		P-0001331-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	17	371	0	ENST00000269305.4:c.328del	p.Arg110ValfsTer13	p.R110Vfs*13	ENST00000269305	NM_001126112.2	110	Cgt/gt																																																																														
ERCC4	0	MSKCC	GRCh37	16	14038659	14038659	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs2020955		P-0001331-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	11	274	0	ENST00000311895.7:c.1984T>C	p.Ser662Pro	p.S662P	ENST00000311895	NM_005236.2	662	Tct/Cct																																																																														
FAT1	0	MSKCC	GRCh37	4	187524525	187524525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35670235		P-0001331-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	12	539	0	ENST00000441802.2:c.11155G>A	p.Val3719Met	p.V3719M	ENST00000441802	NM_005245.3	3719	Gtg/Atg																																																																														
ARID2	0	MSKCC	GRCh37	12	46233204	46233204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139689510		P-0001331-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	12	566	0	ENST00000334344.6:c.1423C>T	p.His475Tyr	p.H475Y	ENST00000334344	NM_152641.2	475	Cat/Tat																																																																														
TP53	0	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001331-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	27	372	0	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001351-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			392	21	199	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0001351-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			373	20	191	1	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
PLK2	0	MSKCC	GRCh37	5	57752375	57752375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001351-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			714	54	334	1	ENST00000274289.3:c.1198C>T	p.His400Tyr	p.H400Y	ENST00000274289	NM_006622.3	400	Cat/Tat																																																																														
MLL3	0	MSKCC	GRCh37	7	151873831	151873831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001351-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	57	502	0	ENST00000262189.6:c.8707C>G	p.Gln2903Glu	p.Q2903E	ENST00000262189	NM_170606.2	2903	Caa/Gaa																																																																														
MLL3	0	MSKCC	GRCh37	7	151874176	151874176	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001351-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			663	42	284	0	ENST00000262189.6:c.8362C>T	p.Gln2788Ter	p.Q2788*	ENST00000262189	NM_170606.2	2788	Cag/Tag																																																																														
KDM5A	0	MSKCC	GRCh37	12	431659	431659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001351-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			794	42	352	0	ENST00000399788.2:c.2350C>T	p.Leu784Phe	p.L784F	ENST00000399788	NM_001042603.1	784	Ctc/Ttc																																																																														
TBX3	0	MSKCC	GRCh37	12	115115436	115115436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001351-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			787	91	451	0	ENST00000257566.3:c.890A>G	p.Asn297Ser	p.N297S	ENST00000257566	NM_016569.3	297	aAc/aGc																																																																														
CDH1	0	MSKCC	GRCh37	16	68856040	68856041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001351-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	109	513	0	ENST00000261769.5:c.1849dup	p.Ala617GlyfsTer46	p.A617Gfs*46	ENST00000261769	NM_004360.3	616	-/G																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001384-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	172	384	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463184	25463184	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001384-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	129	278	0	ENST00000264709.3:c.2309C>A	p.Ser770Ter	p.S770*	ENST00000264709	NM_175629.2	770	tCg/tAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720709	89720709	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001384-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	28	43	0	ENST00000371953.3:c.860C>G	p.Ser287Ter	p.S287*	ENST00000371953	NM_000314.4	287	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0001384-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	45	184	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056189	27056189	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001415-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	103	278	0	ENST00000324856.7:c.1185T>A	p.Tyr395Ter	p.Y395*	ENST00000324856	NM_006015.4	395	taT/taA																																																																														
ALK	0	MSKCC	GRCh37	2	30142909	30142909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001415-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	25	353	0	ENST00000389048.3:c.617C>T	p.Ala206Val	p.A206V	ENST00000389048	NM_004304.4	206	gCg/gTg																																																																														
GATA3	0	MSKCC	GRCh37	10	8111512	8111513	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001415-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	298	451	0	ENST00000346208.3:c.999dupT	p.Gly334TrpfsTer18	p.G334Wfs*18	ENST00000346208		333	aat/aaTt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98220354	98220354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	102	131	0	ENST00000331920.6:c.3109G>A	p.Ala1037Thr	p.A1037T	ENST00000331920	NM_000264.3	1037	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001445-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	236	185	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																																																														
RB1	0	MSKCC	GRCh37	13	48955423	48955424	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0001445-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	96	266	0	ENST00000267163.4:c.1540_1541delTT	p.Phe514ProfsTer8	p.F514Pfs*8	ENST00000267163	NM_000321.2	513	tcTTtc/tctc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060853	38060859	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCCGT	AAGCCGT	-			P-0001445-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	607	431	0	ENST00000250448.2:c.1130_1136delACGGCTT	p.His377ArgfsTer10	p.H377Rfs*10	ENST00000250448	NM_004496.3	377	cACGGCTTg/cg																																																																														
PLK2	0	MSKCC	GRCh37	5	57751237	57751237	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			157	260	274	0	ENST00000274289.3:c.1630G>C	p.Val544Leu	p.V544L	ENST00000274289	NM_006622.3	544	Gtt/Ctt																																																																														
KDM5A	0	MSKCC	GRCh37	12	443454	443454	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			179	313	285	0	ENST00000399788.2:c.1443C>A	p.Cys481Ter	p.C481*	ENST00000399788	NM_001042603.1	481	tgC/tgA																																																																														
BRCA2	0	MSKCC	GRCh37	13	32953632	32953633	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			271	356	482	0	ENST00000380152.3:c.8940dupA	p.Glu2981ArgfsTer37	p.E2981Rfs*37	ENST00000380152		2978	tca/tcAa																																																																														
APC	0	MSKCC	GRCh37	5	112175687	112175687	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			173	323	280	0	ENST00000257430.4:c.4396G>T	p.Gly1466Ter	p.G1466*	ENST00000257430	NM_000038.5	1466	Gga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	88	299	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CD274	0	MSKCC	GRCh37	9	5457134	5457134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	96	241	16	ENST00000381577.3:c.108G>A	p.Met36Ile	p.M36I	ENST00000381577	NM_014143.3	36	atG/atA																																																																														
ABL1	0	MSKCC	GRCh37	9	133759553	133759553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	96	567	0	ENST00000318560.5:c.1876G>A	p.Gly626Ser	p.G626S	ENST00000318560	NM_005157.4	626	Ggc/Agc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31387080	31387080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			800	102	403	0	ENST00000328111.2:c.1705G>A	p.Ala569Thr	p.A569T	ENST00000328111	NM_006892.3	569	Gca/Aca																																																																														
TBX3	0	MSKCC	GRCh37	12	115112637	115112637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001475-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	67	267	0	ENST00000257566.3:c.1103del	p.Leu368TyrfsTer264	p.L368Yfs*264	ENST00000257566	NM_016569.3	368	tTa/ta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001481-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	38	116	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CDH1	0	MSKCC	GRCh37	16	68847379	68847380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001481-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	154	385	0	ENST00000261769.5:c.1302dup	p.Ile435HisfsTer11	p.I435Hfs*11	ENST00000261769	NM_004360.3	434	ggc/ggCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	69	151	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	234	469	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	389	465	0	ENST00000292408.4:c.1648G>C	p.Val550Leu	p.V550L	ENST00000292408	NM_213647.1	550	Gtg/Ctg																																																																														
ROS1	0	MSKCC	GRCh37	6	117700310	117700310	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	101	387	0	ENST00000368508.3:c.2509A>G	p.Thr837Ala	p.T837A	ENST00000368508	NM_002944.2	837	Act/Gct																																																																														
FANCA	0	MSKCC	GRCh37	16	89849317	89849317	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	169	508	0	ENST00000389301.3:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000389301	NM_000135.2	526	Gaa/Caa																																																																														
STK11	0	MSKCC	GRCh37	19	1220400	1220400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	186	513	0	ENST00000326873.7:c.493G>C	p.Glu165Gln	p.E165Q	ENST00000326873	NM_000455.4	165	Gag/Cag																																																																														
NF2	0	MSKCC	GRCh37	22	30090761	30090761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	194	681	0	ENST00000338641.4:c.1758G>T	p.Lys586Asn	p.K586N	ENST00000338641	NM_000268.3	586	aaG/aaT																																																																														
STAG2	0	MSKCC	GRCh37	X	123179131	123179131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	138	578	0	ENST00000218089.9:c.580G>A	p.Glu194Lys	p.E194K	ENST00000218089	NM_001042749.1	194	Gag/Aag																																																																														
STAG2	0	MSKCC	GRCh37	X	123179139	123179139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	137	596	0	ENST00000218089.9:c.588G>A	p.Met196Ile	p.M196I	ENST00000218089	NM_001042749.1	196	atG/atA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	43	245	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217162	66217162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	55	362	0	ENST00000273854.3:c.2453A>G	p.Asp818Gly	p.D818G	ENST00000273854	NM_004439.5	818	gAc/gGc																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944946	31944946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			147	29	141	0	ENST00000340398.3:c.155G>A	p.Arg52His	p.R52H	ENST00000340398	NM_001013699.2	52	cGt/cAt																																																																														
TBX3	0	MSKCC	GRCh37	12	115111972	115111973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAGGCC			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	13	154	0	ENST00000257566.3:c.1761_1767dup	p.Gln590GlyfsTer104	p.Q590Gfs*104	ENST00000257566	NM_016569.3	589	-/GGCCTCT																																																																														
TBX3	0	MSKCC	GRCh37	12	115120708	115120709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	73	570	0	ENST00000257566.3:c.296_297dupTG	p.Glu100TrpfsTer40	p.E100Wfs*40	ENST00000257566	NM_016569.3	99	-/TG																																																																														
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	14	221	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																															
CDH1	0	MSKCC	GRCh37	16	68847257	68847273	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACACTGAAAGTGA	CACCACACTGAAAGTGA	-			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	25	313	0	ENST00000261769.5:c.1180_1196del	p.Thr394Ter	p.T394*	ENST00000261769	NM_004360.3	393	atCACCACACTGAAAGTGAct/atct																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164686	36164686	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001503-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	44	432	0	ENST00000300305.3:c.1189del	p.Gln397LysfsTer197	p.Q397Kfs*197	ENST00000300305		397	Caa/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001506-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	150	280	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001506-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1914	46	594	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098950	178098950	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001506-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1007	459	436	0	ENST00000397062.3:c.95T>G	p.Val32Gly	p.V32G	ENST00000397062	NM_006164.4	32	gTa/gGa																																																																														
EGFR	0	MSKCC	GRCh37	7	55266440	55266440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001506-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2151	157	428	0	ENST00000275493.2:c.2732G>C	p.Gly911Ala	p.G911A	ENST00000275493	NM_005228.3	911	gGa/gCa																																																																														
EGFR	0	MSKCC	GRCh37	7	55266543	55266543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001506-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1638	128	330	0	ENST00000275493.2:c.2835G>A	p.Met945Ile	p.M945I	ENST00000275493	NM_005228.3	945	atG/atA																																																																														
TSC2	0	MSKCC	GRCh37	16	2104358	2104358	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001506-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			808	246	410	0	ENST00000219476.3:c.398A>G	p.Asn133Ser	p.N133S	ENST00000219476	NM_000548.3	133	aAc/aGc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465580	8465581	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0001506-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			947	77	490	0	ENST00000356435.5:c.3599_3600delinsA	p.Pro1200GlnfsTer31	p.P1200Qfs*31	ENST00000356435		1200	cCC/cA																																																																														
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001513-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	79	220	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			685	260	442	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	59	207	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	53	358	0	ENST00000269305.4:c.736A>C	p.Met246Leu	p.M246L	ENST00000269305	NM_001126112.2	246	Atg/Ctg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164881	36164881	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	26	284	0	ENST00000300305.3:c.994G>C	p.Asp332His	p.D332H	ENST00000300305		332	Gac/Cac																																																																														
CTCF	0	MSKCC	GRCh37	16	67644880	67644881	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGT			P-0001516-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			627	107	462	0	ENST00000264010.4:c.146_149dupAGGT	p.Val51GlyfsTer27	p.V51Gfs*27	ENST00000264010	NM_006565.3	49	gag/gAGGTag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0001536-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	51	341	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188317	32188317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144492578		P-0001539-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	60	743	0	ENST00000375023.3:c.1024G>A	p.Val342Met	p.V342M	ENST00000375023	NM_004557.3	342	Gtg/Atg																																																																														
ABL1	0	MSKCC	GRCh37	9	133710842	133710842	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001539-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	68	415	0	ENST00000318560.5:c.9G>C	p.Glu3Asp	p.E3D	ENST00000318560	NM_005157.4	3	gaG/gaC																																																																														
SUFU	0	MSKCC	GRCh37	10	104359246	104359246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001539-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	67	664	0	ENST00000369902.3:c.967G>A	p.Val323Ile	p.V323I	ENST00000369902	NM_016169.3	323	Gtc/Atc																																																																														
MET	0	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0001546-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			402	134	293	1	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001549-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			43	561	711	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
KIT	0	MSKCC	GRCh37	4	55599339	55599341	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0001562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	86	525	0	ENST00000288135.5:c.2467_2469del	p.Tyr823del	p.Y823del	ENST00000288135	NM_000222.2	822	aATTat/aat																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001566-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			944	64	284	1	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577572	7577574	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0001572-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	399	450	0	ENST00000269305.4:c.707_709del	p.Tyr236_Met237delinsLeu	p.Y236_M237delinsL	ENST00000269305	NM_001126112.2	236	tACAtg/ttg																																																																														
HGF	0	MSKCC	GRCh37	7	81372744	81372744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001586-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			348	249	443	0	ENST00000222390.5:c.790G>A	p.Asp264Asn	p.D264N	ENST00000222390	NM_000601.4	264	Gat/Aat																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790038	40790038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001586-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			649	178	341	0	ENST00000373198.4:c.2693C>T	p.Thr898Met	p.T898M	ENST00000373198	NM_133170.3	898	aCg/aTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974795	21974818	+	inframe_deletion	In_Frame_Del	DEL	GGCTCCATGCTGCTCCCCGCCGCC	GGCTCCATGCTGCTCCCCGCCGCC	-			P-0001586-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			111	27	170	0	ENST00000304494.5:c.9_32delGGCGGCGGGGAGCAGCATGGAGCC	p.Ala4_Pro11del	p.A4_P11del	ENST00000304494	NM_000077.4	3	ccGGCGGCGGGGAGCAGCATGGAGCCt/cct																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974795	21974818	+	inframe_deletion	In_Frame_Del	DEL	GGCTCCATGCTGCTCCCCGCCGCC	GGCTCCATGCTGCTCCCCGCCGCC	-			P-0001586-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			111	27	170	0	ENST00000304494.5:c.9_32delGGCGGCGGGGAGCAGCATGGAGCC	p.Ala4_Pro11del	p.A4_P11del	ENST00000304494	NM_000077.4	3	ccGGCGGCGGGGAGCAGCATGGAGCCt/cct																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0001586-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			326	17347	472	2	ENST00000269571.5:c.2305G>C	p.Asp769His	p.D769H	ENST00000269571		769	Gac/Cac																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481856	56481856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001586-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			481	205	480	0	ENST00000267101.3:c.784C>T	p.Pro262Ser	p.P262S	ENST00000267101	NM_001982.3	262	Cct/Tct																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001589-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			672	714	339	1	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879794	37879794	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001589-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	158	224	0	ENST00000269571.5:c.2089G>C	p.Val697Leu	p.V697L	ENST00000269571		697	Gtg/Ctg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001600-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1021	167	362	0	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52678727	52678727	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001600-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1688	118	559	0	ENST00000394830.3:c.892C>T	p.Arg298Ter	p.R298*	ENST00000394830	NM_018313.4	298	Cga/Tga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486241	8486241	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001600-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1467	107	507	0	ENST00000356435.5:c.2576A>C	p.Lys859Thr	p.K859T	ENST00000356435		859	aAa/aCa																																																																														
MLL2	0	MSKCC	GRCh37	12	49425677	49425678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001600-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			898	143	469	0	ENST00000301067.7:c.12810dup	p.Thr4271AspfsTer63	p.T4271Dfs*63	ENST00000301067	NM_003482.3	4270	-/G																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	20	182	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	31	352	0	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																														
ATR	0	MSKCC	GRCh37	3	142266713	142266713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			986	52	451	0	ENST00000350721.4:c.3211G>A	p.Asp1071Asn	p.D1071N	ENST00000350721	NM_001184.3	1071	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	14	385	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																																																														
NF1	0	MSKCC	GRCh37	17	29533361	29533361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			979	56	365	0	ENST00000358273.4:c.1364G>A	p.Gly455Glu	p.G455E	ENST00000358273	NM_001042492.2	455	gGa/gAa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938459	44938459	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			738	52	294	0	ENST00000377967.4:c.3007C>T	p.Gln1003Ter	p.Q1003*	ENST00000377967	NM_021140.2	1003	Cag/Tag																																																																														
IKBKE	0	MSKCC	GRCh37	1	206649640	206649640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001643-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	78	166	0	ENST00000367120.3:c.475G>A	p.Gly159Ser	p.G159S	ENST00000367120	NM_014002.3	159	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7579569	7579575	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCTTG	TTGCTTG	-			P-0001643-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	116	242	1	ENST00000269305.4:c.112_118del	p.Gln38TrpfsTer4	p.Q38Wfs*4	ENST00000269305	NM_001126112.2	38	CAAGCAAtg/tg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0001647-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	362	568	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001647-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	241	411	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112174379	112174379	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001647-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	80	360	0	ENST00000257430.4:c.3088A>T	p.Lys1030Ter	p.K1030*	ENST00000257430	NM_000038.5	1030	Aaa/Taa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980832	40980832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001647-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			863	486	515	1	ENST00000373198.4:c.1654C>T	p.Leu552Phe	p.L552F	ENST00000373198	NM_133170.3	552	Ctc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001653-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	352	483	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001653-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	119	512	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																														
ARID2	0	MSKCC	GRCh37	12	46245426	46245426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	311	392	2	ENST00000334344.6:c.3520A>C	p.Ile1174Leu	p.I1174L	ENST00000334344	NM_152641.2	1174	Ata/Cta																																																																														
MLL2	0	MSKCC	GRCh37	12	49434108	49434108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	131	252	0	ENST00000301067.7:c.7445G>A	p.Gly2482Glu	p.G2482E	ENST00000301067	NM_003482.3	2482	gGg/gAg																																																																														
B2M	0	MSKCC	GRCh37	15	45007611	45007621	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATTCCTCAGG	TATTCCTCAGG	-			P-0001686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	81	224	0	ENST00000558401.1:c.68-8_70del		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
NF1	0	MSKCC	GRCh37	17	29587399	29587400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	242	367	0	ENST00000358273.4:c.4444dup	p.Ile1482AsnfsTer4	p.I1482Nfs*4	ENST00000358273	NM_001042492.2	1481	-/A																																																																														
NF1	0	MSKCC	GRCh37	17	29664534	29664535	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0001686-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	210	403	0	ENST00000358273.4:c.6585_6586dup	p.Thr2196ArgfsTer5	p.T2196Rfs*5	ENST00000358273	NM_001042492.2	2192	-/GA																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001696-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	320	405	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
CSF1R	0	MSKCC	GRCh37	5	149447787	149447787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001696-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	140	197	0	ENST00000286301.3:c.1617G>C	p.Lys539Asn	p.K539N	ENST00000286301	NM_005211.3	539	aaG/aaC																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484278	8484278	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001696-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1186	299	424	0	ENST00000356435.5:c.3254T>G	p.Leu1085Arg	p.L1085R	ENST00000356435		1085	cTg/cGg																																																																														
SPEN	0	MSKCC	GRCh37	1	16256646	16256669	+	inframe_deletion	In_Frame_Del	DEL	AAGAGTCTTTAAAATTTAATCCTT	AAGAGTCTTTAAAATTTAATCCTT	-			P-0001696-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	161	332	0	ENST00000375759.3:c.3912_3935del	p.Glu1304_Tyr1312delinsAsp	p.E1304_Y1312delinsD	ENST00000375759	NM_015001.2	1304	gAAGAGTCTTTAAAATTTAATCCTTat/gat																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434404	121434407	+	missense_variant	Missense_Mutation	ONP	GAGC	GAGC	AAGA			P-0001696-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			250	285	410	0	ENST00000257555.6:c.1168_1171delinsAAGA	p.Glu390_Gln391delinsLysLys	p.E390_Q391delinsKK	ENST00000257555		390	GAGCag/AAGAag																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001701-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			82	74	435	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0001701-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	75	466	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
ROS1	0	MSKCC	GRCh37	6	117609911	117609911	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001701-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			43	107	560	0	ENST00000368508.3:c.6788T>C	p.Leu2263Ser	p.L2263S	ENST00000368508	NM_002944.2	2263	tTa/tCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	163	558	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	21	296	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	40	715	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			590	150	671	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	63	424	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PTPRS	0	MSKCC	GRCh37	19	5245976	5245976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	24	684	0	ENST00000357368.4:c.799G>A	p.Val267Met	p.V267M	ENST00000357368	NM_002850.3	267	Gtg/Atg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291846	15291846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	64	529	0	ENST00000263388.2:c.2920G>A	p.Gly974Arg	p.G974R	ENST00000263388	NM_000435.2	974	Ggg/Agg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31375045	31375045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001734-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	87	489	0	ENST00000328111.2:c.442C>T	p.Arg148Trp	p.R148W	ENST00000328111	NM_006892.3	148	Cgg/Tgg																																																																														
MTOR	0	MSKCC	GRCh37	1	11259674	11259674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	54	531	2	ENST00000361445.4:c.4031C>T	p.Ala1344Val	p.A1344V	ENST00000361445	NM_004958.3	1344	gCc/gTc																																																																														
STK40	0	MSKCC	GRCh37	1	36807550	36807550	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	30	390	0	ENST00000373129.3:c.1114C>T	p.Gln372Ter	p.Q372*	ENST00000373129	NM_032017.1	372	Cag/Tag																																																																														
MYCL1	0	MSKCC	GRCh37	1	40363468	40363468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	73	568	0	ENST00000397332.2:c.761C>T	p.Ser254Phe	p.S254F	ENST00000397332	NM_001033082.2	254	tCc/tTc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46725644	46725645	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	47	597	0	ENST00000371975.4:c.280_281delinsAA	p.Gly94Asn	p.G94N	ENST00000371975	NM_003579.3	94	GGc/AAc																																																																														
JAK1	0	MSKCC	GRCh37	1	65330546	65330546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	94	678	0	ENST00000342505.4:c.1100C>T	p.Ser367Phe	p.S367F	ENST00000342505	NM_002227.2	367	tCt/tTt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120468217	120468217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	61	417	0	ENST00000256646.2:c.4222G>A	p.Gly1408Ser	p.G1408S	ENST00000256646	NM_024408.3	1408	Ggt/Agt																																																																														
CDC73	0	MSKCC	GRCh37	1	193121534	193121534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	95	559	0	ENST00000367435.3:c.932C>T	p.Thr311Ile	p.T311I	ENST00000367435	NM_024529.4	311	aCt/aTt																																																																														
PARP1	0	MSKCC	GRCh37	1	226573347	226573348	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	49	377	0	ENST00000366794.5:c.868_869delinsAA	p.Gly290Asn	p.G290N	ENST00000366794	NM_001618.3	290	GGt/AAt																																																																														
PMS1	0	MSKCC	GRCh37	2	190719467	190719467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	85	444	0	ENST00000441310.2:c.1469C>T	p.Ser490Phe	p.S490F	ENST00000441310	NM_000534.4	490	tCt/tTt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198274527	198274527	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	69	623	1	ENST00000335508.6:c.871A>T	p.Asn291Tyr	p.N291Y	ENST00000335508	NM_012433.2	291	Aac/Tac																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248746	212248746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	61	456	0	ENST00000342788.4:c.3521G>A	p.Arg1174Gln	p.R1174Q	ENST00000342788	NM_005235.2	1174	cGg/cAg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212589874	212589874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	84	442	0	ENST00000342788.4:c.668G>A	p.Gly223Glu	p.G223E	ENST00000342788	NM_005235.2	223	gGa/gAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47162068	47162068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	34	520	0	ENST00000409792.3:c.4058C>T	p.Ser1353Phe	p.S1353F	ENST00000409792	NM_014159.6	1353	tCc/tTc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52588800	52588800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	54	446	0	ENST00000394830.3:c.4228G>A	p.Gly1410Arg	p.G1410R	ENST00000394830	NM_018313.4	1410	Ggg/Agg																																																																														
KDR	0	MSKCC	GRCh37	4	55979555	55979555	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	35	690	0	ENST00000263923.4:c.892A>G	p.Thr298Ala	p.T298A	ENST00000263923	NM_002253.2	298	Acc/Gcc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66231707	66231707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	49	572	0	ENST00000273854.3:c.1993G>A	p.Glu665Lys	p.E665K	ENST00000273854	NM_004439.5	665	Gaa/Aaa																																																																														
FAT1	0	MSKCC	GRCh37	4	187521088	187521088	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	52	436	0	ENST00000441802.2:c.12067C>T	p.Gln4023Ter	p.Q4023*	ENST00000441802	NM_005245.3	4023	Cag/Tag																																																																														
FAT1	0	MSKCC	GRCh37	4	187630072	187630072	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	36	562	0	ENST00000441802.2:c.910A>T	p.Arg304Ter	p.R304*	ENST00000441802	NM_005245.3	304	Aga/Tga																																																																														
RICTOR	0	MSKCC	GRCh37	5	38991102	38991102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	143	553	0	ENST00000357387.3:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000357387	NM_152756.3	178	Caa/Taa																																																																														
RICTOR	0	MSKCC	GRCh37	5	39074461	39074461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	17	273	0	ENST00000357387.3:c.19G>A	p.Gly7Ser	p.G7S	ENST00000357387	NM_152756.3	7	Ggc/Agc																																																																														
RASA1	0	MSKCC	GRCh37	5	86658431	86658431	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	126	559	1	ENST00000274376.6:c.1396A>T	p.Lys466Ter	p.K466*	ENST00000274376	NM_002890.2	466	Aaa/Taa																																																																														
ROS1	0	MSKCC	GRCh37	6	117647407	117647407	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	87	590	0	ENST00000368508.3:c.5537A>T	p.Glu1846Val	p.E1846V	ENST00000368508	NM_002944.2	1846	gAg/gTg																																																																														
LATS1	0	MSKCC	GRCh37	6	150005449	150005449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	32	534	1	ENST00000253339.5:c.776G>A	p.Arg259Lys	p.R259K	ENST00000253339		259	aGa/aAa																																																																														
HGF	0	MSKCC	GRCh37	7	81335007	81335007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	111	573	0	ENST00000222390.5:c.1820C>T	p.Pro607Leu	p.P607L	ENST00000222390	NM_000601.4	607	cCt/cTt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106522619	106522619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	69	598	0	ENST00000359195.3:c.2596C>T	p.Pro866Ser	p.P866S	ENST00000359195	NM_002649.2	866	Cca/Tca																																																																														
MLL3	0	MSKCC	GRCh37	7	151874632	151874632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	60	524	0	ENST00000262189.6:c.7906G>A	p.Gly2636Ser	p.G2636S	ENST00000262189	NM_170606.2	2636	Ggt/Agt																																																																														
MLL3	0	MSKCC	GRCh37	7	152132732	152132733	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	29	286	0	ENST00000262189.6:c.139_140delinsTT	p.Pro47Phe	p.P47F	ENST00000262189	NM_170606.2	47	CCt/TTt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486101	8486101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	102	675	0	ENST00000356435.5:c.2716G>A	p.Glu906Lys	p.E906K	ENST00000356435		906	Gag/Aag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	96	505	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	96	505	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401834	139401834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	41	614	0	ENST00000277541.6:c.3566C>T	p.Ser1189Phe	p.S1189F	ENST00000277541	NM_017617.3	1189	tCc/tTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139418261	139418261	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	48	520	0	ENST00000277541.6:c.311A>T	p.Asn104Ile	p.N104I	ENST00000277541	NM_017617.3	104	aAt/aTt																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851953	63851953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			260	56	383	0	ENST00000279873.7:c.2731C>T	p.Pro911Ser	p.P911S	ENST00000279873	NM_032199.2	911	Ccc/Tcc																																																																														
TET1	0	MSKCC	GRCh37	10	70332628	70332628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	23	513	0	ENST00000373644.4:c.533C>T	p.Pro178Leu	p.P178L	ENST00000373644	NM_030625.2	178	cCc/cTc																																																																														
TET1	0	MSKCC	GRCh37	10	70405899	70405899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	31	693	0	ENST00000373644.4:c.3413C>T	p.Ser1138Leu	p.S1138L	ENST00000373644	NM_030625.2	1138	tCa/tTa																																																																														
SUFU	0	MSKCC	GRCh37	10	104352456	104352456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	41	594	0	ENST00000369902.3:c.572C>G	p.Pro191Arg	p.P191R	ENST00000369902	NM_016169.3	191	cCc/cGc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279500	123279500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	50	584	0	ENST00000358487.5:c.932T>C	p.Val311Ala	p.V311A	ENST00000358487	NM_000141.4	311	gTt/gCt																																																																														
HRAS	0	MSKCC	GRCh37	11	532643	532643	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	14	459	0	ENST00000311189.7:c.563T>C	p.Leu188Pro	p.L188P	ENST00000311189		188	cTc/cCc																																																																														
ATM	0	MSKCC	GRCh37	11	108168019	108168019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	75	477	1	ENST00000278616.4:c.4915C>T	p.Pro1639Ser	p.P1639S	ENST00000278616	NM_000051.3	1639	Ccg/Tcg																																																																														
ATM	0	MSKCC	GRCh37	11	108202276	108202276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	59	405	0	ENST00000278616.4:c.7621C>A	p.Leu2541Ile	p.L2541I	ENST00000278616	NM_000051.3	2541	Ctc/Atc																																																																														
MLL	0	MSKCC	GRCh37	11	118374837	118374837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	50	461	0	ENST00000534358.1:c.8230C>T	p.Pro2744Ser	p.P2744S	ENST00000534358	NM_005933.3	2744	Cca/Tca																																																																														
KDM5A	0	MSKCC	GRCh37	12	475134	475135	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	51	597	0	ENST00000399788.2:c.502_503delinsTT	p.Pro168Leu	p.P168L	ENST00000399788	NM_001042603.1	168	CCa/TTa																																																																														
RAD52	0	MSKCC	GRCh37	12	1022604	1022604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	65	653	0	ENST00000358495.3:c.1210C>T	p.His404Tyr	p.H404Y	ENST00000358495	NM_134424.2	404	Cat/Tat																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435047	18435047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	71	594	0	ENST00000266497.5:c.32C>T	p.Pro11Leu	p.P11L	ENST00000266497		11	cCt/cTt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435256	18435256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	98	615	0	ENST00000266497.5:c.241G>A	p.Ala81Thr	p.A81T	ENST00000266497		81	Gca/Aca																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18576974	18576974	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	58	499	0	ENST00000266497.5:c.2381+1G>A		p.X794_splice	ENST00000266497		794																																																																															
ARID2	0	MSKCC	GRCh37	12	46243379	46243379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	70	537	0	ENST00000334344.6:c.1732C>T	p.His578Tyr	p.H578Y	ENST00000334344	NM_152641.2	578	Cat/Tat																																																																														
MLL2	0	MSKCC	GRCh37	12	49420694	49420694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	49	422	0	ENST00000301067.7:c.15055G>A	p.Ala5019Thr	p.A5019T	ENST00000301067	NM_003482.3	5019	Gcc/Acc																																																																														
MLL2	0	MSKCC	GRCh37	12	49440570	49440570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	42	411	0	ENST00000301067.7:c.4240A>G	p.Thr1414Ala	p.T1414A	ENST00000301067	NM_003482.3	1414	Acc/Gcc																																																																														
MLL2	0	MSKCC	GRCh37	12	49448410	49448410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	40	556	0	ENST00000301067.7:c.301G>A	p.Gly101Arg	p.G101R	ENST00000301067	NM_003482.3	101	Ggg/Agg																																																																														
POLE	0	MSKCC	GRCh37	12	133219305	133219305	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201950040		P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	56	463	0	ENST00000320574.5:c.4739G>A	p.Arg1580Gln	p.R1580Q	ENST00000320574	NM_006231.2	1580	cGg/cAg																																																																														
POLE	0	MSKCC	GRCh37	12	133245002	133245002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200621883		P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	77	593	0	ENST00000320574.5:c.2113C>T	p.Arg705Trp	p.R705W	ENST00000320574	NM_006231.2	705	Cgg/Tgg																																																																														
FLT1	0	MSKCC	GRCh37	13	28963960	28963960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	59	687	0	ENST00000282397.4:c.1942C>T	p.Leu648Phe	p.L648F	ENST00000282397	NM_002019.4	648	Ctc/Ttc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514425	103514425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	85	448	0	ENST00000355739.4:c.926C>T	p.Pro309Leu	p.P309L	ENST00000355739	NM_000123.3	309	cCt/cTt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515078	103515078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	36	351	0	ENST00000355739.4:c.1579C>T	p.Pro527Ser	p.P527S	ENST00000355739	NM_000123.3	527	Cca/Tca																																																																														
IRS2	0	MSKCC	GRCh37	13	110434778	110434779	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	25	444	0	ENST00000375856.3:c.3622_3623delinsAG	p.Gln1208Arg	p.Q1208R	ENST00000375856	NM_003749.2	1208	CAg/AGg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857784	9857784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145861983		P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	53	657	0	ENST00000330684.3:c.3617G>A	p.Arg1206Gln	p.R1206Q	ENST00000330684	NM_001134407.1	1206	cGa/cAa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032306	10032306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	41	363	0	ENST00000330684.3:c.517G>A	p.Val173Met	p.V173M	ENST00000330684	NM_001134407.1	173	Gtg/Atg																																																																														
ERCC4	0	MSKCC	GRCh37	16	14014047	14014047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	81	574	0	ENST00000311895.7:c.25C>T	p.Arg9Trp	p.R9W	ENST00000311895	NM_005236.2	9	Cgg/Tgg																																																																														
CDH1	0	MSKCC	GRCh37	16	68857469	68857469	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149127230		P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	58	475	0	ENST00000261769.5:c.2104G>A	p.Glu702Lys	p.E702K	ENST00000261769	NM_004360.3	702	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	19	567	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	43	616	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
NF1	0	MSKCC	GRCh37	17	29687583	29687583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	68	685	1	ENST00000358273.4:c.8239G>A	p.Asp2747Asn	p.D2747N	ENST00000358273	NM_001042492.2	2747	Gat/Aat																																																																														
RARA	0	MSKCC	GRCh37	17	38512437	38512438	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	17	459	0	ENST00000254066.5:c.1348_1349delinsTT	p.Pro450Phe	p.P450F	ENST00000254066	NM_000964.3	450	CCc/TTc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243605	41243605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	35	694	0	ENST00000357654.3:c.3943C>T	p.Pro1315Ser	p.P1315S	ENST00000357654	NM_007294.3	1315	Cct/Tct																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533703	63533704	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	15	439	0	ENST00000307078.5:c.1450_1451delinsAA	p.Gly484Asn	p.G484N	ENST00000307078	NM_004655.3	484	GGt/AAt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097021	11097021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	10	636	0	ENST00000344626.4:c.512C>T	p.Pro171Leu	p.P171L	ENST00000344626	NM_003072.3	171	cCa/cTa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271748	15271748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	26	439	0	ENST00000263388.2:c.6691C>T	p.Pro2231Ser	p.P2231S	ENST00000263388	NM_000435.2	2231	Cca/Tca																																																																														
CIC	0	MSKCC	GRCh37	19	42797822	42797822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	28	416	0	ENST00000575354.2:c.3874C>T	p.Pro1292Ser	p.P1292S	ENST00000575354	NM_015125.3	1292	Cct/Tct																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31390252	31390253	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			260	53	575	0	ENST00000328111.2:c.2207_2208delinsAA	p.Trp736Ter	p.W736*	ENST00000328111	NM_006892.3	736	tGG/tAA																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714447	40714447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	43	436	0	ENST00000373198.4:c.3950C>T	p.Pro1317Leu	p.P1317L	ENST00000373198	NM_133170.3	1317	cCc/cTc																																																																														
BCOR	0	MSKCC	GRCh37	X	39932294	39932294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	78	376	0	ENST00000378444.4:c.2305G>A	p.Glu769Lys	p.E769K	ENST00000378444	NM_001123385.1	769	Gaa/Aaa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53243888	53243888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	98	353	0	ENST00000375401.3:c.1105C>T	p.Pro369Ser	p.P369S	ENST00000375401	NM_004187.3	369	Cca/Tca																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0001750-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	3508	611	3	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001750-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	546	428	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																														
PMS1	0	MSKCC	GRCh37	2	190728864	190728864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001750-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	94	376	0	ENST00000441310.2:c.2252G>A	p.Arg751Lys	p.R751K	ENST00000441310	NM_000534.4	751	aGa/aAa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396740	139396740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001750-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	61	371	0	ENST00000277541.6:c.5368G>T	p.Asp1790Tyr	p.D1790Y	ENST00000277541	NM_017617.3	1790	Gac/Tac																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857569	9857569	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001750-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			939	175	590	0	ENST00000330684.3:c.3832C>A	p.Gln1278Lys	p.Q1278K	ENST00000330684	NM_001134407.1	1278	Caa/Aaa																																																																														
STK11	0	MSKCC	GRCh37	19	1207197	1207199	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0001750-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	116	369	1	ENST00000326873.7:c.289_290+1del		p.VKdel	ENST00000326873	NM_000455.4	95	gtGAAg/gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	860	466	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212288967	212288967	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	515	480	0	ENST00000342788.4:c.2779C>T	p.Arg927Ter	p.R927*	ENST00000342788	NM_005235.2	927	Cga/Tga																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1179	364	410	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
APC	0	MSKCC	GRCh37	5	112155042	112155042	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	204	320	0	ENST00000257430.4:c.1312+1G>A		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																															
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	235	379	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																														
ATM	0	MSKCC	GRCh37	11	108163405	108163405	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	309	473	0	ENST00000278616.4:c.4496G>T	p.Ser1499Ile	p.S1499I	ENST00000278616	NM_000051.3	1499	aGt/aTt																																																																														
ATRX	0	MSKCC	GRCh37	X	76937769	76937770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1508	270	576	1	ENST00000373344.5:c.2978dup	p.Lys994GlufsTer6	p.K994Efs*6	ENST00000373344	NM_000489.3	993	aag/aaAg																																																																														
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			886	177	506	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0001777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	119	433	1	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001784-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	323	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001784-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	200	285	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522597	176522597	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200766146		P-0001784-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	115	393	2	ENST00000292408.4:c.1694G>A	p.Arg565Gln	p.R565Q	ENST00000292408	NM_213647.1	565	cGg/cAg																																																																														
LATS2	0	MSKCC	GRCh37	13	21555603	21555603	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0001784-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	133	386	0	ENST00000382592.4:c.2665+2T>A		p.X889_splice	ENST00000382592	NM_014572.2	889																																																																															
TP53	0	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	69	507	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																														
IRS1	0	MSKCC	GRCh37	2	227661316	227661316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	46	482	0	ENST00000305123.5:c.2139C>A	p.His713Gln	p.H713Q	ENST00000305123	NM_005544.2	713	caC/caA																																																																														
MLH1	0	MSKCC	GRCh37	3	37050389	37050389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	64	464	0	ENST00000231790.2:c.538G>T	p.Val180Phe	p.V180F	ENST00000231790	NM_000249.3	180	Gtt/Ttt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55153670	55153670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	28	554	0	ENST00000257290.5:c.2636G>A	p.Trp879Ter	p.W879*	ENST00000257290	NM_006206.4	879	tGg/tAg																																																																														
NPM1	0	MSKCC	GRCh37	5	170834713	170834713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	43	473	0	ENST00000296930.5:c.781C>T	p.Leu261Phe	p.L261F	ENST00000296930	NM_002520.6	261	Ctt/Ttt																																																																														
MLL2	0	MSKCC	GRCh37	12	49426075	49426075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	21	358	0	ENST00000301067.7:c.12413C>A	p.Ser4138Tyr	p.S4138Y	ENST00000301067	NM_003482.3	4138	tCt/tAt																																																																														
YES1	0	MSKCC	GRCh37	18	736915	736915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	69	591	0	ENST00000314574.4:c.1184G>T	p.Arg395Leu	p.R395L	ENST00000314574	NM_005433.3	395	cGa/cTa																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867709	45867709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200895828		P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	80	495	1	ENST00000391945.4:c.691G>A	p.Val231Met	p.V231M	ENST00000391945	NM_000400.3	231	Gtg/Atg																																																																														
PAK7	0	MSKCC	GRCh37	20	9624868	9624868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	62	502	0	ENST00000353224.5:c.109C>A	p.Gln37Lys	p.Q37K	ENST00000353224	NM_177990.2	37	Cag/Aag																																																																														
BCOR	0	MSKCC	GRCh37	X	39922100	39922100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	18	647	0	ENST00000378444.4:c.4072T>A	p.Ser1358Thr	p.S1358T	ENST00000378444	NM_001123385.1	1358	Tcc/Acc																																																																														
AR	0	MSKCC	GRCh37	X	66937445	66937445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	27	535	0	ENST00000374690.3:c.2299C>A	p.Pro767Thr	p.P767T	ENST00000374690	NM_000044.3	767	Cct/Act																																																																														
STK11	0	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	55	407	0	ENST00000326873.7:c.843delG	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156844801	156844801	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			815	746	646	0	ENST00000524377.1:c.1354+1G>C		p.X452_splice	ENST00000524377	NM_002529.3	452																																																																															
EPHB1	0	MSKCC	GRCh37	3	134911588	134911588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			857	498	645	0	ENST00000398015.3:c.2053G>T	p.Gly685Cys	p.G685C	ENST00000398015	NM_004441.4	685	Ggt/Tgt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55140716	55140716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1014	1051	800	0	ENST00000257290.5:c.1577C>T	p.Thr526Met	p.T526M	ENST00000257290	NM_006206.4	526	aCg/aTg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55153709	55153709	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	476	684	0	ENST00000257290.5:c.2674+1G>A		p.X892_splice	ENST00000257290	NM_006206.4	892																																																																															
KDR	0	MSKCC	GRCh37	4	55964423	55964423	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			827	921	769	0	ENST00000263923.4:c.2390T>A	p.Leu797Gln	p.L797Q	ENST00000263923	NM_002253.2	797	cTg/cAg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280109	66280109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			890	796	663	1	ENST00000273854.3:c.1580C>T	p.Ala527Val	p.A527V	ENST00000273854	NM_004439.5	527	gCa/gTa																																																																														
INPP4B	0	MSKCC	GRCh37	4	143045899	143045899	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs143791426		P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			746	637	492	1	ENST00000262992.4:c.1735C>A	p.Gln579Lys	p.Q579K	ENST00000262992	NM_001101669.1	579	Cag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187541475	187541475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1340	1134	974	0	ENST00000441802.2:c.6265G>T	p.Val2089Phe	p.V2089F	ENST00000441802	NM_005245.3	2089	Gtt/Ttt																																																																														
TERT	0	MSKCC	GRCh37	5	1294328	1294328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	409	371	0	ENST00000310581.5:c.673G>C	p.Gly225Arg	p.G225R	ENST00000310581	NM_198253.2	225	Ggg/Cgg																																																																														
ROS1	0	MSKCC	GRCh37	6	117707013	117707013	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			644	606	538	0	ENST00000368508.3:c.2137T>A	p.Tyr713Asn	p.Y713N	ENST00000368508	NM_002944.2	713	Tat/Aat																																																																														
HGF	0	MSKCC	GRCh37	7	81381556	81381556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			999	910	614	0	ENST00000222390.5:c.505G>T	p.Gly169Cys	p.G169C	ENST00000222390	NM_000601.4	169	Ggt/Tgt																																																																														
BRAF	0	MSKCC	GRCh37	7	140508753	140508753	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1084	915	602	0	ENST00000288602.6:c.547A>T	p.Lys183Ter	p.K183*	ENST00000288602	NM_004333.4	183	Aaa/Taa																																																																														
MLL3	0	MSKCC	GRCh37	7	151878130	151878130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			714	644	633	1	ENST00000262189.6:c.6815G>A	p.Cys2272Tyr	p.C2272Y	ENST00000262189	NM_170606.2	2272	tGt/tAt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8375964	8375964	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144763077		P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			51	811	708	0	ENST00000356435.5:c.4633G>A	p.Asp1545Asn	p.D1545N	ENST00000356435		1545	Gat/Aat																																																																														
RB1	0	MSKCC	GRCh37	13	48881496	48881496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			43	851	679	0	ENST00000267163.4:c.218G>T	p.Arg73Ile	p.R73I	ENST00000267163	NM_000321.2	73	aGa/aTa																																																																														
RB1	0	MSKCC	GRCh37	13	48955573	48955573	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			22	565	497	0	ENST00000267163.4:c.1689G>C	p.Trp563Cys	p.W563C	ENST00000267163	NM_000321.2	563	tgG/tgC																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858588	9858588	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1041	1036	823	1	ENST00000330684.3:c.2813A>T	p.Lys938Met	p.K938M	ENST00000330684	NM_001134407.1	938	aAg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			21	594	593	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281518	15281518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			34	612	609	3	ENST00000263388.2:c.4855C>T	p.Arg1619Cys	p.R1619C	ENST00000263388	NM_000435.2	1619	Cgc/Tgc																																																																														
BCOR	0	MSKCC	GRCh37	X	39933471	39933471	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1059	869	779	0	ENST00000378444.4:c.1128C>A	p.Tyr376Ter	p.Y376*	ENST00000378444	NM_001123385.1	376	taC/taA																																																																														
RBM10	0	MSKCC	GRCh37	X	47038720	47038720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	567	550	0	ENST00000329236.7:c.496G>T	p.Ala166Ser	p.A166S	ENST00000329236	NM_001204466.1	166	Gca/Tca																																																																														
XIAP	0	MSKCC	GRCh37	X	123019784	123019784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			758	554	710	2	ENST00000355640.3:c.272G>T	p.Arg91Ile	p.R91I	ENST00000355640		91	aGa/aTa																																																																														
STAG2	0	MSKCC	GRCh37	X	123200217	123200217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001790-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1017	933	735	0	ENST00000218089.9:c.2196C>A	p.His732Gln	p.H732Q	ENST00000218089	NM_001042749.1	732	caC/caA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001797-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	26	319	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16254929	16254929	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001797-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	82	433	4	ENST00000375759.3:c.2194C>T	p.Arg732Ter	p.R732*	ENST00000375759	NM_015001.2	732	Cga/Tga																																																																														
ESR1	2099	MSKCC	GRCh37	6	152382152	152382154	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0001797-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	75	507	0	ENST00000206249.3:c.1265_1267del	p.Val422del	p.V422del	ENST00000206249	NM_000125.3	421	aTGGtg/atg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0001797-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	145	382	0	ENST00000346208.3:c.1299_1300dupCC	p.His434ProfsTer42	p.H434Pfs*42	ENST00000346208		433	cac/caCCc																																																																														
ATM	0	MSKCC	GRCh37	11	108129753	108129753	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001829-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			741	309	531	0	ENST00000278616.4:c.2417T>G	p.Leu806Trp	p.L806W	ENST00000278616	NM_000051.3	806	tTg/tGg																																																																														
SPEN	0	MSKCC	GRCh37	1	16237609	16237610	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATG			P-0001829-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			327	206	364	0	ENST00000375759.3:c.1058_1061dup	p.Leu355TrpfsTer5	p.L355Wfs*5	ENST00000375759	NM_015001.2	352	-/GATG																																																																														
TET1	0	MSKCC	GRCh37	10	70332200	70332200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001829-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	577	939	0	ENST00000373644.4:c.105C>A	p.Asn35Lys	p.N35K	ENST00000373644	NM_030625.2	35	aaC/aaA																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954022	32954023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1305653361		P-0001829-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			690	242	495	12	ENST00000380152.3:c.9097dup	p.Thr3033AsnfsTer11	p.T3033Nfs*11	ENST00000380152		3030	aca/acAa																																																																														
HGF	0	MSKCC	GRCh37	7	81372758	81372758	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			669	196	540	0	ENST00000222390.5:c.776A>G	p.Tyr259Cys	p.Y259C	ENST00000222390	NM_000601.4	259	tAt/tGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0001832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			668	897	649	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578414	7578414	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	177	657	0	ENST00000269305.4:c.516delT	p.Val173Ter	p.V173*	ENST00000269305	NM_001126112.2	172	gtT/gt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097199	11097200	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCCT			P-0001832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	57	635	0	ENST00000344626.4:c.708_713dup	p.Gly243_Pro244dup	p.G243_P244dup	ENST00000344626	NM_003072.3	243	-/GGCCCT																																																																														
TP53	0	MSKCC	GRCh37	17	7574027	7574027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			753	135	660	0	ENST00000269305.4:c.1000G>T	p.Gly334Trp	p.G334W	ENST00000269305	NM_001126112.2	334	Ggg/Tgg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001848-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	183	193	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100375	27100375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001848-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	313	311	0	ENST00000324856.7:c.4087C>T	p.Gln1363Ter	p.Q1363*	ENST00000324856	NM_006015.4	1363	Caa/Taa																																																																														
PLK2	0	MSKCC	GRCh37	5	57754846	57754846	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001848-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	127	364	0	ENST00000274289.3:c.344A>T	p.His115Leu	p.H115L	ENST00000274289	NM_006622.3	115	cAc/cTc																																																																														
BRAF	0	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0001848-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	153	203	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt																																																																														
SOX9	0	MSKCC	GRCh37	17	70119032	70119032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001848-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	56	240	1	ENST00000245479.2:c.604G>A	p.Ala202Thr	p.A202T	ENST00000245479	NM_000346.3	202	Gcc/Acc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40911143	40911143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001848-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	244	360	0	ENST00000373198.4:c.2162G>A	p.Arg721His	p.R721H	ENST00000373198	NM_133170.3	721	cGt/cAt																																																																														
AR	0	MSKCC	GRCh37	X	66905902	66905902	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001848-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	146	423	0	ENST00000374690.3:c.1819T>C	p.Phe607Leu	p.F607L	ENST00000374690	NM_000044.3	607	Ttc/Ctc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52713603	52713603	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	150	507	0	ENST00000394830.3:c.125del	p.Pro42GlnfsTer3	p.P42Qfs*3	ENST00000394830	NM_018313.4	42	cCa/ca																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0001871-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	39	219	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
MLL2	0	MSKCC	GRCh37	12	49425503	49425503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001871-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	48	490	0	ENST00000301067.7:c.12985C>T	p.Gln4329Ter	p.Q4329*	ENST00000301067	NM_003482.3	4329	Cag/Tag																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121241	29121241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001871-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	40	569	0	ENST00000328354.6:c.434G>T	p.Arg145Leu	p.R145L	ENST00000328354	NM_007194.3	145	cGg/cTg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44918514	44918514	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001871-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	62	608	0	ENST00000377967.4:c.997C>T	p.Gln333Ter	p.Q333*	ENST00000377967	NM_021140.2	333	Cag/Tag																																																																														
STAG2	0	MSKCC	GRCh37	X	123184118	123184122	+	frameshift_variant	Frame_Shift_Del	DEL	GACAG	GACAG	A			P-0001871-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	46	547	0	ENST00000218089.9:c.976_980delinsA	p.Asp326IlefsTer3	p.D326Ifs*3	ENST00000218089	NM_001042749.1	326	GACAGt/At																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	132	287	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			710	248	472	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																														
NF1	0	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	247	432	0	ENST00000358273.4:c.6852_6855delTTAC	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	39	134	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
ATM	0	MSKCC	GRCh37	11	108216596	108216596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	254	417	0	ENST00000278616.4:c.8545C>T	p.Arg2849Ter	p.R2849*	ENST00000278616	NM_000051.3	2849	Cga/Tga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489534	56489534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			630	206	450	0	ENST00000267101.3:c.1999C>T	p.Arg667Cys	p.R667C	ENST00000267101	NM_001982.3	667	Cgt/Tgt																																																																														
MPL	0	MSKCC	GRCh37	1	43818415	43818415	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	51	440	0	ENST00000372470.3:c.1880T>C	p.Leu627Pro	p.L627P	ENST00000372470	NM_005373.2	627	cTa/cCa																																																																														
JAK1	0	MSKCC	GRCh37	1	65303788	65303788	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	220	360	0	ENST00000342505.4:c.2968-1G>T		p.X990_splice	ENST00000342505	NM_002227.2	990																																																																															
MSH6	0	MSKCC	GRCh37	2	48033780	48033780	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	38	371	0	ENST00000234420.5:c.3991C>T	p.Arg1331Ter	p.R1331*	ENST00000234420	NM_000179.2	1331	Cga/Tga																																																																														
XPO1	0	MSKCC	GRCh37	2	61724120	61724120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			621	209	399	0	ENST00000401558.2:c.782G>A	p.Arg261Gln	p.R261Q	ENST00000401558	NM_003400.3	261	cGa/cAa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356269	66356269	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200754741		P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			759	272	465	0	ENST00000273854.3:c.1228G>A	p.Gly410Ser	p.G410S	ENST00000273854	NM_004439.5	410	Ggt/Agt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66535427	66535427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1472517358		P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	115	172	0	ENST00000273854.3:c.34C>T	p.Arg12Trp	p.R12W	ENST00000273854	NM_004439.5	12	Cgg/Tgg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56167763	56167763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			764	217	492	2	ENST00000399503.3:c.1328G>A	p.Cys443Tyr	p.C443Y	ENST00000399503	NM_005921.1	443	tGt/tAt																																																																														
LATS1	0	MSKCC	GRCh37	6	150022976	150022976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			795	270	518	2	ENST00000253339.5:c.287G>A	p.Arg96Gln	p.R96Q	ENST00000253339		96	cGg/cAg																																																																														
CARD11	0	MSKCC	GRCh37	7	2959019	2959019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	102	318	0	ENST00000396946.4:c.2497C>T	p.Pro833Ser	p.P833S	ENST00000396946	NM_032415.4	833	Ccc/Tcc																																																																														
BRAF	0	MSKCC	GRCh37	7	140476880	140476880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	159	371	0	ENST00000288602.6:c.1526G>A	p.Arg509Gln	p.R509Q	ENST00000288602	NM_004333.4	509	cGa/cAa																																																																														
AXIN1	0	MSKCC	GRCh37	16	347829	347829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	141	527	0	ENST00000262320.3:c.1677G>T	p.Gln559His	p.Q559H	ENST00000262320	NM_003502.3	559	caG/caT																																																																														
CREBBP	0	MSKCC	GRCh37	16	3777897	3777897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	170	497	0	ENST00000262367.5:c.7151A>G	p.His2384Arg	p.H2384R	ENST00000262367	NM_004380.2	2384	cAc/cGc																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7983656	7983656	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	119	397	0	ENST00000319144.4:c.651G>T	p.Met217Ile	p.M217I	ENST00000319144	NM_001139.2	217	atG/atT																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610622	10610622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	150	367	1	ENST00000171111.5:c.88G>A	p.Ala30Thr	p.A30T	ENST00000171111	NM_203500.1	30	Gcg/Acg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15292438	15292438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	123	446	0	ENST00000263388.2:c.2741C>T	p.Pro914Leu	p.P914L	ENST00000263388	NM_000435.2	914	cCa/cTa																																																																														
CHEK2	0	MSKCC	GRCh37	22	29092945	29092945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	190	492	0	ENST00000328354.6:c.1039G>T	p.Asp347Tyr	p.D347Y	ENST00000328354	NM_007194.3	347	Gac/Tac																																																																														
CHEK2	0	MSKCC	GRCh37	22	29092948	29092948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	237	491	0	ENST00000328354.6:c.1036C>A	p.Arg346Ser	p.R346S	ENST00000328354	NM_007194.3	346	Cgt/Agt																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52637699	52637700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	487	432	0	ENST00000394830.3:c.2616dup	p.Ile873TyrfsTer2	p.I873Yfs*2	ENST00000394830	NM_018313.4	872	-/T																																																																														
NSD1	0	MSKCC	GRCh37	5	176673750	176673750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			707	189	462	0	ENST00000439151.2:c.4455del	p.Val1486Ter	p.V1486*	ENST00000439151	NM_022455.4	1484	Aaa/aa																																																																														
TET1	0	MSKCC	GRCh37	10	70332273	70332273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			733	252	588	0	ENST00000373644.4:c.184del	p.Thr62GlnfsTer13	p.T62Qfs*13	ENST00000373644	NM_030625.2	60	Aaa/aa																																																																														
MLL2	0	MSKCC	GRCh37	12	49447086	49447087	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			780	222	387	0	ENST00000301067.7:c.857_858del	p.Ser286Ter	p.S286*	ENST00000301067	NM_003482.3	286	tCT/t																																																																														
NF1	0	MSKCC	GRCh37	17	29556463	29556463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	150	215	0	ENST00000358273.4:c.2835del	p.Phe945LeufsTer9	p.F945Lfs*9	ENST00000358273	NM_001042492.2	944	Ttt/tt																																																																														
TET2	0	MSKCC	GRCh37	4	106155373	106155373	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	36	660	0	ENST00000380013.4:c.274G>C	p.Gly92Arg	p.G92R	ENST00000380013	NM_001127208.2	92	Gga/Cga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	41	167	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	41	167	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520776	176520776	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			66	214	196	0	ENST00000292408.4:c.1519G>T	p.Asp507Tyr	p.D507Y	ENST00000292408	NM_213647.1	507	Gac/Tac																																																																														
PIM1	0	MSKCC	GRCh37	6	37140778	37140778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	266	226	1	ENST00000373509.5:c.614G>T	p.Arg205Leu	p.R205L	ENST00000373509	NM_002648.3	205	cGa/cTa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739097	145739097	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	114	128	0	ENST00000428558.2:c.2059-1G>A		p.X687_splice	ENST00000428558	NM_004260.3	687																																																																															
PTPRD	0	MSKCC	GRCh37	9	8341727	8341727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	435	337	0	ENST00000356435.5:c.4913G>T	p.Gly1638Val	p.G1638V	ENST00000356435		1638	gGa/gTa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103518121	103518121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	135	179	0	ENST00000355739.4:c.2059G>A	p.Gly687Arg	p.G687R	ENST00000355739	NM_000123.3	687	Gga/Aga																																																																														
TP53	0	MSKCC	GRCh37	17	7577084	7577084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	207	258	0	ENST00000269305.4:c.854A>T	p.Glu285Val	p.E285V	ENST00000269305	NM_001126112.2	285	gAg/gTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101079	41101079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	243	257	0	ENST00000373198.4:c.1277A>G	p.Tyr426Cys	p.Y426C	ENST00000373198	NM_133170.3	426	tAc/tGc																																																																														
STK11	0	MSKCC	GRCh37	19	1222996	1223003	+	frameshift_variant	Frame_Shift_Del	DEL	GAAACATC	GAAACATC	-			P-0001891-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			55	135	125	0	ENST00000326873.7:c.933_940del	p.Lys311AsnfsTer4	p.K311Nfs*4	ENST00000326873	NM_000455.4	311	aaGAAACATCct/aact																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001906-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	554	487	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	347	374	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138452225	138452225	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			812	133	434	0	ENST00000289153.2:c.1028T>G	p.Leu343Arg	p.L343R	ENST00000289153	NM_006219.2	343	cTt/cGt																																																																														
FAT1	0	MSKCC	GRCh37	4	187628545	187628545	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	120	412	0	ENST00000441802.2:c.2437G>C	p.Val813Leu	p.V813L	ENST00000441802	NM_005245.3	813	Gtc/Ctc																																																																														
ROS1	0	MSKCC	GRCh37	6	117737472	117737472	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			860	73	338	0	ENST00000368508.3:c.177A>T	p.Gln59His	p.Q59H	ENST00000368508	NM_002944.2	59	caA/caT																																																																														
PARK2	0	MSKCC	GRCh37	6	162206845	162206845	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			710	176	336	0	ENST00000366898.1:c.830T>G	p.Phe277Cys	p.F277C	ENST00000366898	NM_004562.2	277	tTt/tGt																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538846	23538846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	111	318	1	ENST00000380871.4:c.593C>T	p.Pro198Leu	p.P198L	ENST00000380871	NM_006167.3	198	cCg/cTg																																																																														
MYC	0	MSKCC	GRCh37	8	128750936	128750936	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	120	329	0	ENST00000377970.2:c.473A>C	p.Lys158Thr	p.K158T	ENST00000377970	NM_002467.4	158	aAg/aCg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484264	8484264	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			888	105	415	0	ENST00000356435.5:c.3268A>T	p.Asn1090Tyr	p.N1090Y	ENST00000356435		1090	Aac/Tac																																																																														
IGF1R	0	MSKCC	GRCh37	15	99500448	99500448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	93	348	0	ENST00000268035.6:c.3881A>T	p.Asp1294Val	p.D1294V	ENST00000268035	NM_000875.3	1294	gAc/gTc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266069	41266101	+	inframe_deletion	In_Frame_Del	DEL	TAGTCACTGGCAGCAACAGTCTTACCTGGACTC	TAGTCACTGGCAGCAACAGTCTTACCTGGACTC	-			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	424	389	0	ENST00000349496.5:c.67_99del	p.Ser23_Ser33del	p.S23_S33del	ENST00000349496	NM_001904.3	22	gtTAGTCACTGGCAGCAACAGTCTTACCTGGACTCt/gtt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391039	139391047	+	inframe_deletion	In_Frame_Del	DEL	CTGCTGGGT	CTGCTGGGT	-			P-0001949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	61	292	0	ENST00000277541.6:c.7144_7152del	p.Thr2382_Gln2384del	p.T2382_Q2384del	ENST00000277541	NM_017617.3	2382	ACCCAGCAG/-																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	201	378	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	267	312	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
MDC1	0	MSKCC	GRCh37	6	30673769	30673769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	70	328	0	ENST00000376406.3:c.3191C>T	p.Pro1064Leu	p.P1064L	ENST00000376406	NM_014641.2	1064	cCg/cTg																																																																														
MLL2	0	MSKCC	GRCh37	12	49425853	49425853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	81	312	1	ENST00000301067.7:c.12635G>A	p.Arg4212Gln	p.R4212Q	ENST00000301067	NM_003482.3	4212	cGg/cAg																																																																														
ERCC5	0	MSKCC	GRCh37	13	103520577	103520577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	208	419	0	ENST00000355739.4:c.2648G>T	p.Gly883Val	p.G883V	ENST00000355739	NM_000123.3	883	gGg/gTg																																																																														
BLM	0	MSKCC	GRCh37	15	91312768	91312768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			585	98	440	0	ENST00000355112.3:c.2507G>T	p.Arg836Met	p.R836M	ENST00000355112	NM_000057.2	836	aGg/aTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098588	11098588	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	201	202	0	ENST00000344626.4:c.1106A>T	p.Glu369Val	p.E369V	ENST00000344626	NM_003072.3	369	gAg/gTg																																																																														
TOP1	0	MSKCC	GRCh37	20	39744979	39744979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	221	414	0	ENST00000361337.2:c.1769G>A	p.Arg590His	p.R590H	ENST00000361337	NM_003286.2	590	cGt/cAt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249013	55249014	+	protein_altering_variant	In_Frame_Ins	INS	-	-	GCACCC			P-0001972-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	3617	314	7	ENST00000275493.2:c.2311_2312insGCACCC	p.Asn771delinsSerThrHis	p.N771delinsSTH	ENST00000275493	NM_005228.3	771	aac/aGCACCCac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002010-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			360	236	342	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TET1	0	MSKCC	GRCh37	10	70404791	70404791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002010-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			354	748	327	0	ENST00000373644.4:c.2305G>A	p.Glu769Lys	p.E769K	ENST00000373644	NM_030625.2	769	Gaa/Aaa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223541	53223541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002010-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			150	134	182	0	ENST00000375401.3:c.3818C>T	p.Pro1273Leu	p.P1273L	ENST00000375401	NM_004187.3	1273	cCc/cTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002010-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			97	438	313	0	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																														
STAT3	0	MSKCC	GRCh37	17	40481471	40481471	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002010-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			770	575	688	0	ENST00000264657.5:c.1238T>G	p.Leu413Arg	p.L413R	ENST00000264657	NM_139276.2	413	cTg/cGg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212483982	212483982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002046-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	54	462	0	ENST00000342788.4:c.2221G>A	p.Gly741Arg	p.G741R	ENST00000342788	NM_005235.2	741	Gga/Aga																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134644679	134644679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs773064927		P-0002046-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	41	429	0	ENST00000398015.3:c.80C>T	p.Thr27Met	p.T27M	ENST00000398015	NM_004441.4	27	aCg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002056-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	468	293	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MDC1	0	MSKCC	GRCh37	6	30680487	30680487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002056-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			649	140	336	0	ENST00000376406.3:c.1232C>T	p.Ser411Leu	p.S411L	ENST00000376406	NM_014641.2	411	tCa/tTa																																																																														
BCOR	0	MSKCC	GRCh37	X	39937175	39937175	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002056-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	140	320	0	ENST00000378444.4:c.8C>G	p.Ser3Ter	p.S3*	ENST00000378444	NM_001123385.1	3	tCa/tGa																																																																														
CARD11	0	MSKCC	GRCh37	7	2969624	2969624	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0002069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			577	239	381	0	ENST00000396946.4:c.1653+2T>A		p.X551_splice	ENST00000396946	NM_032415.4	551																																																																															
ETV1	0	MSKCC	GRCh37	7	14028655	14028655	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			772	374	604	0	ENST00000405192.2:c.23A>C	p.Gln8Pro	p.Q8P	ENST00000405192	NM_001163147.1	8	cAa/cCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			680	425	611	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MTOR	0	MSKCC	GRCh37	1	11174885	11174885	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			799	145	382	0	ENST00000361445.4:c.7149G>C	p.Leu2383Phe	p.L2383F	ENST00000361445	NM_004958.3	2383	ttG/ttC																																																																														
SPEN	0	MSKCC	GRCh37	1	16259291	16259291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	79	118	1	ENST00000375759.3:c.6556G>A	p.Ala2186Thr	p.A2186T	ENST00000375759	NM_015001.2	2186	Gcc/Acc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101324	27101324	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			960	189	284	0	ENST00000324856.7:c.4606G>C	p.Asp1536His	p.D1536H	ENST00000324856	NM_006015.4	1536	Gat/Cat																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120512166	120512166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			944	176	259	0	ENST00000256646.2:c.1076C>T	p.Ser359Phe	p.S359F	ENST00000256646	NM_024408.3	359	tCc/tTc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914629	32914629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	147	295	0	ENST00000380152.3:c.6137C>T	p.Ser2046Leu	p.S2046L	ENST00000380152		2046	tCa/tTa																																																																														
IDH2	0	MSKCC	GRCh37	15	90630494	90630494	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			749	123	274	0	ENST00000330062.3:c.817C>G	p.His273Asp	p.H273D	ENST00000330062	NM_002168.2	273	Cac/Gac																																																																														
MLL3	0	MSKCC	GRCh37	7	151874399	151874401	+	stop_gained	Nonsense_Mutation	ONP	ATC	ATC	TTA			P-0002079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1138	607	341	1	ENST00000262189.6:c.8137_8139delinsTAA	p.Asp2713Ter	p.D2713*	ENST00000262189	NM_170606.2	2713	GAT/TAA																																																																														
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002100-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	476	533	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0002140-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	115	358	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
RAF1	0	MSKCC	GRCh37	3	12645693	12645693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002140-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	95	259	0	ENST00000251849.4:c.776C>T	p.Ser259Phe	p.S259F	ENST00000251849	NM_002880.3	259	tCc/tTc																																																																														
ETV1	0	MSKCC	GRCh37	7	13935633	13935633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002140-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	44	316	0	ENST00000405192.2:c.1223G>A	p.Arg408His	p.R408H	ENST00000405192	NM_001163147.1	408	cGt/cAt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453987	140453987	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0002140-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	88	324	0	ENST00000288602.6:c.1741A>T	p.Asn581Tyr	p.N581Y	ENST00000288602	NM_004333.4	581	Aat/Tat																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002140-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	85	302	0	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002140-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	90	247	0	ENST00000269305.4:c.764T>G	p.Ile255Ser	p.I255S	ENST00000269305	NM_001126112.2	255	aTc/aGc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240810	53240810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002140-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	61	377	0	ENST00000375401.3:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000375401	NM_004187.3	424	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1005	25	417	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	167	418	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
RHOA	0	MSKCC	GRCh37	3	49412964	49412964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			772	185	567	0	ENST00000418115.1:c.59G>T	p.Cys20Phe	p.C20F	ENST00000418115	NM_001664.2	20	tGc/tTc																																																																														
TP63	0	MSKCC	GRCh37	3	189584524	189584524	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			731	97	428	0	ENST00000264731.3:c.820C>G	p.Gln274Glu	p.Q274E	ENST00000264731	NM_003722.4	274	Cag/Gag																																																																														
FAT1	0	MSKCC	GRCh37	4	187518162	187518162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	131	453	0	ENST00000441802.2:c.12532G>A	p.Gly4178Arg	p.G4178R	ENST00000441802	NM_005245.3	4178	Ggg/Agg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163695	32163695	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	49	180	0	ENST00000375023.3:c.5531G>C	p.Arg1844Pro	p.R1844P	ENST00000375023	NM_004557.3	1844	cGg/cCg																																																																														
MLL	0	MSKCC	GRCh37	11	118366500	118366500	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			610	162	408	0	ENST00000534358.1:c.5449A>G	p.Thr1817Ala	p.T1817A	ENST00000534358	NM_005933.3	1817	Act/Gct																																																																														
RB1	0	MSKCC	GRCh37	13	48878151	48878151	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	23	47	0	ENST00000267163.4:c.103C>T	p.Gln35Ter	p.Q35*	ENST00000267163	NM_000321.2	35	Cag/Tag																																																																														
AXIN1	0	MSKCC	GRCh37	16	360007	360007	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	79	443	0	ENST00000262320.3:c.1082A>T	p.Gln361Leu	p.Q361L	ENST00000262320	NM_003502.3	361	cAg/cTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11118581	11118581	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	80	220	1	ENST00000344626.4:c.2005G>T	p.Glu669Ter	p.E669*	ENST00000344626	NM_003072.3	669	Gag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123742	11123742	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	117	363	0	ENST00000344626.4:c.2392G>T	p.Glu798Ter	p.E798*	ENST00000344626	NM_003072.3	798	Gag/Tag																																																																														
EGFR	0	MSKCC	GRCh37	7	55220237	55220238	+	splice_acceptor_variant	Splice_Site	DNP	AG	AG	CC			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			585	99	423	0	ENST00000275493.2:c.629-2_629-1delinsCC		p.X210_splice	ENST00000275493	NM_005228.3	210																																																																															
KDM6A	0	MSKCC	GRCh37	X	44919298	44919300	+	missense_variant	Missense_Mutation	ONP	TAC	TAC	CAA			P-0002160-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	41	135	0	ENST00000377967.4:c.1226_1228delinsCAA	p.Leu409_Gln410delinsProLys	p.L409_Q410delinsPK	ENST00000377967	NM_021140.2	409	cTACag/cCAAag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15973802	15973802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	149	347	0	ENST00000268712.3:c.4190C>G	p.Ser1397Cys	p.S1397C	ENST00000268712	NM_006311.3	1397	tCt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578268	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGCTGAGGAG	AGATGCTGAGGAG	-			P-0002183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	280	385	0	ENST00000269305.4:c.569_581del	p.Pro190LeufsTer53	p.P190Lfs*53	ENST00000269305	NM_001126112.2	190	cCTCCTCAGCATCTt/ct																																																																														
B2M	0	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0002193-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			992	196	417	1	ENST00000558401.1:c.3G>A	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002208-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	267	265	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197766	66197766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002208-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	162	496	1	ENST00000273854.3:c.2933A>G	p.Lys978Arg	p.K978R	ENST00000273854	NM_004439.5	978	aAg/aGg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002211-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			707	191	380	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106916	27106917	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0002211-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			718	92	351	0	ENST00000324856.7:c.6527_6528delAG	p.Gln2176ArgfsTer48	p.Q2176Rfs*48	ENST00000324856	NM_006015.4	2176	cAG/c																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0002290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	307	576	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
MDM2	0	MSKCC	GRCh37	12	69222704	69222704	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002290-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	47	505	0	ENST00000462284.1:c.677C>A	p.Ser226Ter	p.S226*	ENST00000462284	NM_002392.5	226	tCg/tAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002312-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	41	675	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RB1	0	MSKCC	GRCh37	13	48937001	48937001	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002312-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	159	765	0	ENST00000267163.4:c.769C>T	p.Gln257Ter	p.Q257*	ENST00000267163	NM_000321.2	257	Cag/Tag																																																																														
FLT4	0	MSKCC	GRCh37	5	180055985	180055985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	37	379	2	ENST00000261937.6:c.1000A>G	p.Ser334Gly	p.S334G	ENST00000261937	NM_182925.4	334	Agc/Ggc																																																																														
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	123	328	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	101	339	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
WT1	0	MSKCC	GRCh37	11	32456647	32456647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	15	131	0	ENST00000332351.3:c.245C>T	p.Ala82Val	p.A82V	ENST00000332351	NM_024426.4	82	gCc/gTc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63534325	63534325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			573	34	412	0	ENST00000307078.5:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000307078	NM_004655.3	399	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			87	1191	358	2	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
DDR2	0	MSKCC	GRCh37	1	162731079	162731079	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2254	552	657	1	ENST00000367921.3:c.934G>T	p.Glu312Ter	p.E312*	ENST00000367921	NM_006182.2	312	Gag/Tag																																																																														
ALK	0	MSKCC	GRCh37	2	29754809	29754809	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	361	431	0	ENST00000389048.3:c.1126C>G	p.Leu376Val	p.L376V	ENST00000389048	NM_004304.4	376	Ctc/Gtc																																																																														
MLH1	0	MSKCC	GRCh37	3	37055939	37055939	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	734	570	2	ENST00000231790.2:c.694G>T	p.Gly232Ter	p.G232*	ENST00000231790	NM_000249.3	232	Gga/Tga																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259148	89259148	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	500	424	0	ENST00000336596.2:c.292G>T	p.Glu98Ter	p.E98*	ENST00000336596	NM_005233.5	98	Gag/Tag																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920506	134920506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			799	446	496	0	ENST00000398015.3:c.2321C>T	p.Ser774Leu	p.S774L	ENST00000398015	NM_004441.4	774	tCa/tTa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178947067	178947067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1432	635	468	0	ENST00000263967.3:c.2503C>T	p.Pro835Ser	p.P835S	ENST00000263967	NM_006218.2	835	Cct/Tct																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185155255	185155255	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1401	385	438	0	ENST00000265026.3:c.496G>C	p.Glu166Gln	p.E166Q	ENST00000265026	NM_004721.4	166	Gag/Cag																																																																														
PTEN	0	MSKCC	GRCh37	10	89711891	89711891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	883	464	0	ENST00000371953.3:c.509G>T	p.Ser170Ile	p.S170I	ENST00000371953	NM_000314.4	170	aGt/aTt																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871138	12871138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	300	219	0	ENST00000228872.4:c.365C>A	p.Pro122Gln	p.P122Q	ENST00000228872	NM_004064.3	122	cCg/cAg																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871186	12871186	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	198	152	0	ENST00000228872.4:c.413C>A	p.Ser138Ter	p.S138*	ENST00000228872	NM_004064.3	138	tCg/tAg																																																																														
RB1	0	MSKCC	GRCh37	13	48919331	48919331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			57	623	303	0	ENST00000267163.4:c.496G>T	p.Glu166Ter	p.E166*	ENST00000267163	NM_000321.2	166	Gaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0002388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	262	400	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
KDM5A	0	MSKCC	GRCh37	12	402145	402145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			707	278	922	0	ENST00000399788.2:c.4646A>G	p.Asn1549Ser	p.N1549S	ENST00000399788	NM_001042603.1	1549	aAt/aGt																																																																														
TBX3	0	MSKCC	GRCh37	12	115118704	115118706	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0002388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	274	559	0	ENST00000257566.3:c.635_637del	p.Asn212del	p.N212del	ENST00000257566	NM_016569.3	212	aACAtt/att																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603006	48603007	+	splice_acceptor_variant	Splice_Site	INS	-	-	GGTCTTT			P-0002388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	19	288	0	ENST00000342988.3:c.1309_1315dup		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																															
SDHA	0	MSKCC	GRCh37	5	251554	251554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002395-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	77	302	1	ENST00000264932.6:c.1765C>T	p.Arg589Trp	p.R589W	ENST00000264932	NM_004168.2	589	Cgg/Tgg																																																																														
ABL1	0	MSKCC	GRCh37	9	133750401	133750401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002395-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	50	514	0	ENST00000318560.5:c.1232T>C	p.Leu411Pro	p.L411P	ENST00000318560	NM_005157.4	411	cTg/cCg																																																																														
MLL3	0	MSKCC	GRCh37	7	151880222	151880222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002398-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	27	195	0	ENST00000262189.6:c.5102G>A	p.Arg1701Lys	p.R1701K	ENST00000262189	NM_170606.2	1701	aGa/aAa																																																																														
PAX5	0	MSKCC	GRCh37	9	37002643	37002643	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0002398-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	95	147	0	ENST00000358127.4:c.604+2T>A		p.X202_splice	ENST00000358127	NM_001280556.1	202																																																																															
EP300	0	MSKCC	GRCh37	22	41533656	41533656	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0002398-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	222	249	0	ENST00000263253.7:c.1623-1G>A		p.X541_splice	ENST00000263253	NM_001429.3	541																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002416-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	188	394	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KIT	0	MSKCC	GRCh37	4	55598114	55598114	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002416-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			708	96	455	0	ENST00000288135.5:c.2311A>T	p.Ser771Cys	p.S771C	ENST00000288135	NM_000222.2	771	Agc/Tgc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485806	8485806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002416-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	65	390	0	ENST00000356435.5:c.3011C>A	p.Pro1004Gln	p.P1004Q	ENST00000356435		1004	cCa/cAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486025	8486025	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002416-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	60	470	0	ENST00000356435.5:c.2792C>G	p.Thr931Ser	p.T931S	ENST00000356435		931	aCt/aGt																																																																														
DICER1	0	MSKCC	GRCh37	14	95590969	95590969	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002416-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	49	321	0	ENST00000343455.3:c.940G>T	p.Gly314Ter	p.G314*	ENST00000343455	NM_177438.2	314	Gga/Tga																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678619	88678619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002416-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	26	184	1	ENST00000360948.2:c.917G>T	p.Arg306Leu	p.R306L	ENST00000360948	NM_001012338.2	306	cGt/cTt																																																																														
STK11	0	MSKCC	GRCh37	19	1219409	1219409	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002416-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	50	244	0	ENST00000326873.7:c.461A>T	p.His154Leu	p.H154L	ENST00000326873	NM_000455.4	154	cAc/cTc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867682	45867682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0002416-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	42	359	0	ENST00000391945.4:c.718G>C	p.Asp240His	p.D240H	ENST00000391945	NM_000400.3	240	Gac/Cac																																																																														
ALK	0	MSKCC	GRCh37	2	29541212	29541212	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002416-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	43	378	0	ENST00000389048.3:c.1605del	p.Ser536ValfsTer25	p.S536Vfs*25	ENST00000389048	NM_004304.4	535	acC/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0002422-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	478	422	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097617	11097617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002422-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			934	79	388	0	ENST00000344626.4:c.797C>T	p.Ser266Leu	p.S266L	ENST00000344626	NM_003072.3	266	tCg/tTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	334	320	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
ERG	0	MSKCC	GRCh37	21	39817469	39817469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			976	74	286	0	ENST00000288319.7:c.94G>C	p.Glu32Gln	p.E32Q	ENST00000288319	NM_182918.3	32	Gag/Cag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0002426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1004	86	307	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0002426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			534	174	290	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
KIT	0	MSKCC	GRCh37	4	55593667	55593669	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0002426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			818	42	302	0	ENST00000288135.5:c.1735_1737del	p.Asp579del	p.D579del	ENST00000288135	NM_000222.2	578	tATGat/tat																																																																														
MLL2	0	MSKCC	GRCh37	12	49426355	49426355	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002436-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	274	362	1	ENST00000301067.7:c.12133C>T	p.Gln4045Ter	p.Q4045*	ENST00000301067	NM_003482.3	4045	Cag/Tag																																																																														
BAP1	0	MSKCC	GRCh37	3	52437193	52437204	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCACCATCCC	CCTCACCATCCC	A			P-0002462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	29	337	0	ENST00000460680.1:c.1840_1851delinsT	p.Gly614SerfsTer25	p.G614Sfs*25	ENST00000460680	NM_004656.3	614	GGGATGGTGAGG/T																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0002482-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			594	76	440	2	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
ASXL2	0	MSKCC	GRCh37	2	26068362	26068362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002482-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	71	393	0	ENST00000435504.4:c.128T>C	p.Leu43Pro	p.L43P	ENST00000435504		43	cTa/cCa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518393	8518393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002482-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	32	168	0	ENST00000356435.5:c.998A>G	p.Glu333Gly	p.E333G	ENST00000356435		333	gAg/gGg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900171	101900171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002482-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	55	285	0	ENST00000374994.4:c.605C>T	p.Ala202Val	p.A202V	ENST00000374994	NM_004612.2	202	gCg/gTg																																																																														
MLL2	0	MSKCC	GRCh37	12	49441836	49441836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002482-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	47	323	0	ENST00000301067.7:c.4148G>A	p.Cys1383Tyr	p.C1383Y	ENST00000301067	NM_003482.3	1383	tGt/tAt																																																																														
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	344	473	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																														
EGFR	0	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	360	534	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485273	8485273	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	58	542	0	ENST00000356435.5:c.3107T>C	p.Leu1036Pro	p.L1036P	ENST00000356435		1036	cTg/cCg																																																																														
ATM	0	MSKCC	GRCh37	11	108206578	108206578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	119	378	0	ENST00000278616.4:c.8158G>T	p.Asp2720Tyr	p.D2720Y	ENST00000278616	NM_000051.3	2720	Gat/Tat																																																																														
IGF1R	0	MSKCC	GRCh37	15	99251260	99251260	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	39	446	0	ENST00000268035.6:c.564G>C	p.Glu188Asp	p.E188D	ENST00000268035	NM_000875.3	188	gaG/gaC																																																																														
IGF1R	0	MSKCC	GRCh37	15	99251278	99251278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	39	446	0	ENST00000268035.6:c.582G>C	p.Lys194Asn	p.K194N	ENST00000268035	NM_000875.3	194	aaG/aaC																																																																														
ATRX	0	MSKCC	GRCh37	X	76938185	76938185	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	155	578	0	ENST00000373344.5:c.2563C>G	p.His855Asp	p.H855D	ENST00000373344	NM_000489.3	855	Cac/Gac																																																																														
DAXX	0	MSKCC	GRCh37	6	33289196	33289196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002533-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			652	180	384	0	ENST00000374542.5:c.356G>A	p.Arg119Gln	p.R119Q	ENST00000374542	NM_001141970.1	119	cGg/cAg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518112	8518112	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002533-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	443	500	0	ENST00000356435.5:c.1279C>T	p.Arg427Ter	p.R427*	ENST00000356435		427	Cga/Tga																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061207	38061207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			273	252	219	0	ENST00000250448.2:c.782G>A	p.Arg261His	p.R261H	ENST00000250448	NM_004496.3	261	cGc/cAc																																																																														
CDK12	0	MSKCC	GRCh37	17	37676232	37676232	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0002537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			286	295	457	1	ENST00000447079.4:c.2987T>G	p.Leu996Ter	p.L996*	ENST00000447079	NM_015083.1	996	tTa/tGa																																																																														
GATA3	0	MSKCC	GRCh37	10	8115744	8115744	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002543-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			644	384	555	2	ENST00000346208.3:c.1090A>G	p.Arg364Gly	p.R364G	ENST00000346208		364	Aga/Gga																																																																														
RAD51	0	MSKCC	GRCh37	15	41001238	41001238	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002543-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	191	541	0	ENST00000267868.3:c.359G>C	p.Gly120Ala	p.G120A	ENST00000267868	NM_002875.4	120	gGa/gCa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12011144	12011144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002543-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	196	415	0	ENST00000353533.5:c.551C>T	p.Ser184Leu	p.S184L	ENST00000353533	NM_003010.3	184	tCg/tTg																																																																														
CBFB	0	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	TT			P-0002543-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	203	162	0	ENST00000412916.2:c.165+2_165+3insTT		p.X55_splice	ENST00000412916		55																																																																															
CDK12	0	MSKCC	GRCh37	17	37618832	37618900	+	inframe_deletion	In_Frame_Del	DEL	AGCAGCAAGGAATCCAGGTCATCCAAGCTCCACAAGGAGAAGACCAGGAAAGAACGGGAGCTGAAGTCT	AGCAGCAAGGAATCCAGGTCATCCAAGCTCCACAAGGAGAAGACCAGGAAAGAACGGGAGCTGAAGTCT	-			P-0002543-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	55	398	0	ENST00000447079.4:c.508_576del	p.Ser170_Ser192del	p.S170_S192del	ENST00000447079	NM_015083.1	170	AGCAGCAAGGAATCCAGGTCATCCAAGCTCCACAAGGAGAAGACCAGGAAAGAACGGGAGCTGAAGTCT/-																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	299	467	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
PIM1	0	MSKCC	GRCh37	6	37138389	37138389	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	209	260	0	ENST00000373509.5:c.38G>C	p.Arg13Pro	p.R13P	ENST00000373509	NM_002648.3	13	cGc/cCc																																																																														
ROS1	0	MSKCC	GRCh37	6	117687422	117687422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	337	428	0	ENST00000368508.3:c.2629G>T	p.Ala877Ser	p.A877S	ENST00000368508	NM_002944.2	877	Gcc/Tcc																																																																														
TSC1	0	MSKCC	GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	703	469	0	ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44913131	44913131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			743	386	612	2	ENST00000377967.4:c.806C>T	p.Ala269Val	p.A269V	ENST00000377967	NM_021140.2	269	gCt/gTt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589619	67589630	+	inframe_deletion	In_Frame_Del	DEL	GAGAATATGATA	GAGAATATGATA	-			P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			711	344	394	0	ENST00000274335.5:c.1384_1395del	p.Glu462_Arg465del	p.E462_R465del	ENST00000274335		461	cGAGAATATGATAga/cga																																																																														
MED12	0	MSKCC	GRCh37	X	70338640	70338653	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCTGAAGCGGC	GCCCCTGAAGCGGC	CGAACAT			P-0002593-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			627	124	420	0	ENST00000374080.3:c.36_49delinsCGAACAT	p.Pro13GlufsTer22	p.P13Efs*22	ENST00000374080		12	cgGCCCCTGAAGCGGCcg/cgCGAACATcg																																																																														
CDK8	0	MSKCC	GRCh37	13	26923215	26923215	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	34	424	0	ENST00000381527.3:c.211C>T	p.Arg71Ter	p.R71*	ENST00000381527	NM_001260.1	71	Cga/Tga																																																																														
DIS3	0	MSKCC	GRCh37	13	73351626	73351626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	69	471	0	ENST00000377767.4:c.586G>C	p.Glu196Gln	p.E196Q	ENST00000377767	NM_014953.3	196	Gaa/Caa																																																																														
DAXX	0	MSKCC	GRCh37	6	33289061	33289064	+	frameshift_variant	Frame_Shift_Del	DEL	AGGT	AGGT	-			P-0002597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			225	103	190	0	ENST00000374542.5:c.488_491del	p.His163ProfsTer65	p.H163Pfs*65	ENST00000374542	NM_001141970.1	163	cACCTc/cc																																																																														
SETD2	0	MSKCC	GRCh37	3	47147516	47147516	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			137	40	312	0	ENST00000409792.3:c.4810T>G	p.Tyr1604Asp	p.Y1604D	ENST00000409792	NM_014159.6	1604	Tac/Gac																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272497	15272497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			106	30	194	0	ENST00000263388.2:c.5942G>A	p.Arg1981His	p.R1981H	ENST00000263388	NM_000435.2	1981	cGc/cAc																																																																														
NF2	0	MSKCC	GRCh37	22	30038257	30038258	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0002608-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	65	333	1	ENST00000338641.4:c.431dupA	p.Tyr144Ter	p.Y144*	ENST00000338641	NM_000268.3	144	tac/tAac																																																																														
RYBP	0	MSKCC	GRCh37	3	72495742	72495748	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTGCG	GTCTGCG	-			P-0002608-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	50	284	0	ENST00000477973.2:c.322_328del	p.Ala109LysfsTer25	p.A109Kfs*25	ENST00000477973	NM_012234.5	108	gcCGCAGAC/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	38	151	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	164	232	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
TSC1	0	MSKCC	GRCh37	9	135781419	135781419	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	114	214	0	ENST00000298552.3:c.1546C>T	p.Gln516Ter	p.Q516*	ENST00000298552	NM_001162426.1	516	Cag/Tag																																																																														
EGFR	0	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	190	268	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																																																														
FLT1	0	MSKCC	GRCh37	13	28896419	28896419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	47	333	0	ENST00000282397.4:c.3031G>A	p.Glu1011Lys	p.E1011K	ENST00000282397	NM_002019.4	1011	Gag/Aag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743924	40743924	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199514226		P-0002614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	56	257	0	ENST00000373198.4:c.3071C>T	p.Thr1024Met	p.T1024M	ENST00000373198	NM_133170.3	1024	aCg/aTg																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652097	36652098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	216	212	0	ENST00000244741.5:c.222dup	p.Lys75GlnfsTer14	p.K75Qfs*14	ENST00000244741	NM_000389.4	73	-/C																																																																														
SMO	0	MSKCC	GRCh37	7	128852180	128852180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002624-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	52	608	0	ENST00000249373.3:c.2252G>T	p.Ser751Ile	p.S751I	ENST00000249373	NM_005631.4	751	aGt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002634-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	101	280	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KIT	0	MSKCC	GRCh37	4	55599321	55599321	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002634-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	14	250	0	ENST00000288135.5:c.2447A>C	p.Asp816Ala	p.D816A	ENST00000288135	NM_000222.2	816	gAc/gCc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101402	27101402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	378	219	0	ENST00000324856.7:c.4689del	p.Met1564Ter	p.M1564*	ENST00000324856	NM_006015.4	1562	Ccc/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	606	264	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
RFWD2	0	MSKCC	GRCh37	1	176132110	176132110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			867	352	318	0	ENST00000367669.3:c.657G>T	p.Trp219Cys	p.W219C	ENST00000367669	NM_022457.5	219	tgG/tgT																																																																														
SF3B1	0	MSKCC	GRCh37	2	198285806	198285806	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			860	338	333	0	ENST00000335508.6:c.247G>T	p.Gly83Ter	p.G83*	ENST00000335508	NM_012433.2	83	Gga/Tga																																																																														
ERBB4	0	MSKCC	GRCh37	2	212426646	212426646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	276	387	0	ENST00000342788.4:c.2469G>T	p.Trp823Cys	p.W823C	ENST00000342788	NM_005235.2	823	tgG/tgT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212589871	212589871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			748	288	353	0	ENST00000342788.4:c.671C>T	p.Pro224Leu	p.P224L	ENST00000342788	NM_005235.2	224	cCt/cTt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66242765	66242765	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	492	298	0	ENST00000273854.3:c.1807T>C	p.Cys603Arg	p.C603R	ENST00000273854	NM_004439.5	603	Tgt/Cgt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143094800	143094800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			766	522	329	1	ENST00000262992.4:c.1344G>T	p.Lys448Asn	p.K448N	ENST00000262992	NM_001101669.1	448	aaG/aaT																																																																														
SMO	0	MSKCC	GRCh37	7	128845452	128845452	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	535	298	0	ENST00000249373.3:c.749C>A	p.Ala250Asp	p.A250D	ENST00000249373	NM_005631.4	250	gCc/gAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8492920	8492920	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	536	329	1	ENST00000356435.5:c.2409C>G	p.Tyr803Ter	p.Y803*	ENST00000356435		803	taC/taG																																																																														
PAX5	0	MSKCC	GRCh37	9	36840576	36840576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	479	320	0	ENST00000358127.4:c.1157C>A	p.Thr386Asn	p.T386N	ENST00000358127	NM_001280556.1	386	aCt/aAt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402781	139402781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	227	258	0	ENST00000277541.6:c.3228G>T	p.Gln1076His	p.Q1076H	ENST00000277541	NM_017617.3	1076	caG/caT																																																																														
TET1	0	MSKCC	GRCh37	10	70333563	70333563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	290	399	0	ENST00000373644.4:c.1468C>A	p.Pro490Thr	p.P490T	ENST00000373644	NM_030625.2	490	Cca/Aca																																																																														
ERCC5	0	MSKCC	GRCh37	13	103524709	103524709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	792	376	0	ENST00000355739.4:c.2840C>T	p.Ser947Phe	p.S947F	ENST00000355739	NM_000123.3	947	tCc/tTc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	558	316	0	ENST00000171111.5:c.994G>A	p.Gly332Ser	p.G332S	ENST00000171111	NM_203500.1	332	Ggc/Agc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101119	41101119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	380	245	0	ENST00000373198.4:c.1237G>T	p.Ala413Ser	p.A413S	ENST00000373198	NM_133170.3	413	Gcg/Tcg																																																																														
RB1	0	MSKCC	GRCh37	13	48955453	48955453	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	847	388	0	ENST00000267163.4:c.1572del	p.Ala525ProfsTer7	p.A525Pfs*7	ENST00000267163	NM_000321.2	523	ttA/tt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002650-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			674	50	277	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987033	36987033	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002650-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	19	163	0	ENST00000354822.5:c.656del	p.Pro219ArgfsTer9	p.P219Rfs*9	ENST00000354822	NM_001079668.2	219	cCg/cg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002657-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	160	191	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922321	178922321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002657-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	44	295	0	ENST00000263967.3:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000263967	NM_006218.2	364	Gga/Aga																																																																														
CDH1	0	MSKCC	GRCh37	16	68857446	68857446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002657-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	285	302	0	ENST00000261769.5:c.2081del	p.Val694AlafsTer28	p.V694Afs*28	ENST00000261769	NM_004360.3	694	gTc/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	260	320	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	207	313	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
GSK3B	0	MSKCC	GRCh37	3	119634913	119634913	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			493	272	330	0	ENST00000316626.5:c.586T>G	p.Leu196Val	p.L196V	ENST00000316626		196	Tta/Gta																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916933	178916933	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	192	294	0	ENST00000263967.3:c.320A>T	p.Asn107Ile	p.N107I	ENST00000263967	NM_006218.2	107	aAc/aTc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060784	38060784	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	340	540	0	ENST00000250448.2:c.1205T>A	p.Ile402Asn	p.I402N	ENST00000250448	NM_004496.3	402	aTc/aAc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061261	38061264	+	missense_variant	Missense_Mutation	ONP	TAGG	TAGG	GAGC			P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	226	382	0	ENST00000250448.2:c.725_728delinsGCTC	p.Ser242_Tyr243delinsCysSer	p.S242_Y243delinsCS	ENST00000250448	NM_004496.3	242	tCCTAc/tGCTCc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591865	48591865	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	273	419	0	ENST00000342988.3:c.1028C>G	p.Ser343Ter	p.S343*	ENST00000342988	NM_005359.5	343	tCa/tGa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602806	10602806	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002677-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	57	299	0	ENST00000171111.5:c.772G>T	p.Glu258Ter	p.E258*	ENST00000171111	NM_203500.1	258	Gaa/Taa																																																																														
LATS1	0	MSKCC	GRCh37	6	149983122	149983122	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002677-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			31	51	333	0	ENST00000253339.5:c.3136A>T	p.Lys1046Ter	p.K1046*	ENST00000253339		1046	Aaa/Taa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518189	8518189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002677-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			31	52	315	0	ENST00000356435.5:c.1202G>T	p.Arg401Leu	p.R401L	ENST00000356435		401	cGg/cTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123734	11123734	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002677-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	55	320	0	ENST00000344626.4:c.2384A>G	p.Tyr795Cys	p.Y795C	ENST00000344626	NM_003072.3	795	tAc/tGc																																																																														
STK11	0	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002677-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			51	52	303	0	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																														
MAPK3	0	MSKCC	GRCh37	16	30129380	30129380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002694-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			785	44	588	0	ENST00000263025.4:c.648G>A	p.Met216Ile	p.M216I	ENST00000263025	NM_002746.2	216	atG/atA																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032583	12032583	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002705-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	184	484	0	ENST00000353533.5:c.1019T>C	p.Phe340Ser	p.F340S	ENST00000353533	NM_003010.3	340	tTc/tCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			922	101	635	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CCND2	0	MSKCC	GRCh37	12	4409068	4409068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			786	59	554	0	ENST00000261254.3:c.763C>T	p.Leu255Phe	p.L255F	ENST00000261254	NM_001759.3	255	Ctc/Ttc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584787	48584787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	150	610	0	ENST00000342988.3:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000342988	NM_005359.5	289	Cag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1220715	1220715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			729	63	487	0	ENST00000326873.7:c.733C>A	p.Leu245Ile	p.L245I	ENST00000326873	NM_000455.4	245	Ctc/Atc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45868129	45868130	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0002718-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			687	63	576	0	ENST00000391945.4:c.560_561delinsGT	p.Gln187Arg	p.Q187R	ENST00000391945	NM_000400.3	187	cAG/cGT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			40	158	352	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	134	196	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112176425	112176425	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	86	302	0	ENST00000257430.4:c.5134G>C	p.Glu1712Gln	p.E1712Q	ENST00000257430	NM_000038.5	1712	Gaa/Caa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	79	334	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																														
IGF2	0	MSKCC	GRCh37	11	2154887	2154887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			97	46	256	0	ENST00000434045.2:c.334G>A	p.Ala112Thr	p.A112T	ENST00000434045	NM_001127598.1	112	Gca/Aca																																																																														
NF1	0	MSKCC	GRCh37	17	29684320	29684320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	201	382	0	ENST00000358273.4:c.7903G>C	p.Asp2635His	p.D2635H	ENST00000358273	NM_001042492.2	2635	Gat/Cat																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435112	18435125	+	frameshift_variant	Frame_Shift_Del	DEL	TCTAGCCAAGTCAG	TCTAGCCAAGTCAG	-			P-0002738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	82	402	0	ENST00000266497.5:c.100_113del	p.Ser34GlyfsTer3	p.S34Gfs*3	ENST00000266497		33	TCTAGCCAAGTCAGt/t																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0002761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	108	69	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11998985	11998985	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	97	113	0	ENST00000353533.5:c.487C>T	p.Gln163Ter	p.Q163*	ENST00000353533	NM_003010.3	163	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7579319	7579319	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	173	66	0	ENST00000269305.4:c.368del	p.Thr123IlefsTer47	p.T123Ifs*47	ENST00000269305	NM_001126112.2	123	aCt/at																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	126	410	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138374244	138374244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	133	367	0	ENST00000289153.2:c.3200A>T	p.Asp1067Val	p.D1067V	ENST00000289153	NM_006219.2	1067	gAc/gTc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0002768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	125	380	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
ARID2	0	MSKCC	GRCh37	12	46231127	46231131	+	frameshift_variant	Frame_Shift_Del	DEL	CAAAA	CAAAA	-			P-0002768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	156	373	0	ENST00000334344.6:c.1048_1052del	p.Lys350TyrfsTer17	p.K350Yfs*17	ENST00000334344	NM_152641.2	349	ttCAAAAct/ttct																																																																														
TP53	0	MSKCC	GRCh37	17	7576870	7576870	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	643	399	0	ENST00000269305.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000269305	NM_001126112.2	326	Gaa/Taa																																																																														
CDK12	0	MSKCC	GRCh37	17	37627182	37627182	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	275	365	0	ENST00000447079.4:c.1097C>G	p.Ser366Ter	p.S366*	ENST00000447079	NM_015083.1	366	tCa/tGa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44945121	44945121	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	160	400	0	ENST00000377967.4:c.3445A>C	p.Asn1149His	p.N1149H	ENST00000377967	NM_021140.2	1149	Aat/Cat																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226186	53226186	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	51	441	1	ENST00000375401.3:c.2663G>C	p.Arg888Pro	p.R888P	ENST00000375401	NM_004187.3	888	cGt/cCt																																																																														
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002781-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			23	176	240	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
MLL3	0	MSKCC	GRCh37	7	151859999	151860032	+	frameshift_variant	Frame_Shift_Del	DEL	GTGTAAAAGAAGGCCTCACTGGGGACTGCTGGAA	GTGTAAAAGAAGGCCTCACTGGGGACTGCTGGAA	-			P-0002781-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			39	436	240	0	ENST00000262189.6:c.10630_10663del	p.Phe3544LeufsTer9	p.F3544Lfs*9	ENST00000262189	NM_170606.2	3544	TTCCAGCAGTCCCCAGTGAGGCCTTCTTTTACACct/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	438	394	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	421	382	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	247	193	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	203	366	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	188	420	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	161	374	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	414	406	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	150	338	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244136	153244136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	525	483	0	ENST00000281708.4:c.2021G>A	p.Arg674Gln	p.R674Q	ENST00000281708	NM_033632.3	674	cGg/cAg																																																																														
PMS2	0	MSKCC	GRCh37	7	6042184	6042184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	178	365	0	ENST00000265849.7:c.437A>G	p.Lys146Arg	p.K146R	ENST00000265849	NM_000535.5	146	aAa/aGa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94201032	94201032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	285	418	0	ENST00000323929.3:c.1045C>T	p.Arg349Trp	p.R349W	ENST00000323929	NM_005591.3	349	Cgg/Tgg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434452	121434452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			493	141	425	0	ENST00000257555.6:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000257555		406	Gcc/Acc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11135046	11135046	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	191	258	0	ENST00000344626.4:c.3013C>T	p.Arg1005Ter	p.R1005*	ENST00000344626	NM_003072.3	1005	Cga/Tga																																																																														
MYC	4609	MSKCC	GRCh37	8	128750762	128750764	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-	rs1274246760		P-0002788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	356	376	0	ENST00000377970.2:c.301_303del	p.Asn101del	p.N101del	ENST00000377970	NM_002467.4	100	gACAac/gac																																																																														
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	145	313	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
SETD2	0	MSKCC	GRCh37	3	47162134	47162134	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	317	264	0	ENST00000409792.3:c.3992T>C	p.Leu1331Pro	p.L1331P	ENST00000409792	NM_014159.6	1331	cTa/cCa																																																																														
APC	0	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	228	255	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	238	221	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
BAP1	0	MSKCC	GRCh37	3	52437677	52437678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	469	252	0	ENST00000460680.1:c.1483dup	p.Thr495AsnfsTer4	p.T495Nfs*4	ENST00000460680	NM_004656.3	495	acg/aAcg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0002802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	142	682	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
AR	0	MSKCC	GRCh37	X	66937416	66937416	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs141425171		P-0002802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	132	703	0	ENST00000374690.3:c.2270A>G	p.Asn757Ser	p.N757S	ENST00000374690	NM_000044.3	757	aAt/aGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577528	7577528	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	144	409	0	ENST00000269305.4:c.753C>G	p.Ile251Met	p.I251M	ENST00000269305	NM_001126112.2	251	atC/atG																																																																														
TP53	0	MSKCC	GRCh37	17	7577118	7577121	+	frameshift_variant	Frame_Shift_Del	DEL	CACG	CACG	-			P-0002819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	253	692	0	ENST00000269305.4:c.817_820delCGTG	p.Arg273PhefsTer71	p.R273Ffs*71	ENST00000269305	NM_001126112.2	273	CGTGtt/tt																																																																														
TP53	0	MSKCC	GRCh37	17	7578277	7578281	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGG	GGAGG	-			P-0002819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	42	485	0	ENST00000269305.4:c.568_572del	p.Pro190SerfsTer17	p.P190Sfs*17	ENST00000269305	NM_001126112.2	190	CCTCCt/t																																																																														
TP53	0	MSKCC	GRCh37	17	7579874	7579875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002819-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	37	557	0	ENST00000269305.4:c.38dup	p.Leu14SerfsTer15	p.L14Sfs*15	ENST00000269305	NM_001126112.2	13	cct/ccCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			956	387	673	1	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	679	902	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																														
RB1	0	MSKCC	GRCh37	13	49033964	49033964	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	122	675	1	ENST00000267163.4:c.2101G>T	p.Asp701Tyr	p.D701Y	ENST00000267163	NM_000321.2	701	Gac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	428	743	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																																																														
CDH1	0	MSKCC	GRCh37	16	68771344	68771344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			779	175	320	1	ENST00000261769.5:c.26C>T	p.Ser9Leu	p.S9L	ENST00000261769	NM_004360.3	9	tCg/tTg																																																																														
JAK3	0	MSKCC	GRCh37	19	17943349	17943349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	434	729	0	ENST00000458235.1:c.2659C>T	p.Arg887Cys	p.R887C	ENST00000458235	NM_000215.3	887	Cgt/Tgt																																																																														
BTK	0	MSKCC	GRCh37	X	100608277	100608277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1462	194	963	1	ENST00000308731.7:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000308731	NM_000061.2	605	Gag/Aag																																																																														
EED	0	MSKCC	GRCh37	11	85961469	85961469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	117	348	0	ENST00000263360.6:c.246C>G	p.Phe82Leu	p.F82L	ENST00000263360	NM_003797.3	82	ttC/ttG																																																																														
ATM	0	MSKCC	GRCh37	11	108168072	108168072	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			653	84	623	0	ENST00000278616.4:c.4968G>C	p.Lys1656Asn	p.K1656N	ENST00000278616	NM_000051.3	1656	aaG/aaC																																																																														
KMT2D	0	MSKCC	GRCh37	12	49428690	49428690	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1458	197	632	2	ENST00000301067.7:c.10260del	p.Ile3421LeufsTer12	p.I3421Lfs*12	ENST00000301067	NM_003482.3	3420	atC/at																																																																														
RAD51	0	MSKCC	GRCh37	15	41020956	41020956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1171	213	972	1	ENST00000267868.3:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000267868	NM_002875.4	193	cGa/cAa																																																																														
MGA	0	MSKCC	GRCh37	15	42042523	42042523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			706	142	664	2	ENST00000219905.7:c.6718G>A	p.Glu2240Lys	p.E2240K	ENST00000219905	NM_001164273.1	2240	Gaa/Aaa																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029041	14029046	+	inframe_deletion	In_Frame_Del	DEL	TCCCAG	TCCCAG	-			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			371	145	363	0	ENST00000311895.7:c.1252_1257del	p.Ser418_Gln419del	p.S418_Q419del	ENST00000311895	NM_005236.2	418	TCCCAG/-																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830129	72830129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			968	183	683	0	ENST00000268489.5:c.6452G>A	p.Arg2151Lys	p.R2151K	ENST00000268489	NM_006885.3	2151	aGg/aAg																																																																														
ERF	0	MSKCC	GRCh37	19	42753139	42753139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	396	471	0	ENST00000222329.4:c.1125C>G	p.Phe375Leu	p.F375L	ENST00000222329	NM_006494.2	375	ttC/ttG																																																																														
CIC	0	MSKCC	GRCh37	19	42794805	42794805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	332	467	1	ENST00000575354.2:c.1885C>A	p.Gln629Lys	p.Q629K	ENST00000575354	NM_015125.3	629	Cag/Aag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56167853	56167853	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			753	124	564	0	ENST00000399503.3:c.1418C>G	p.Ser473Ter	p.S473*	ENST00000399503	NM_005921.1	473	tCa/tGa																																																																														
RASA1	0	MSKCC	GRCh37	5	86672738	86672738	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			450	78	465	0	ENST00000274376.6:c.2225C>G	p.Ser742Ter	p.S742*	ENST00000274376	NM_002890.2	742	tCa/tGa																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858188	27858188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			791	776	534	0	ENST00000359303.2:c.383C>T	p.Ala128Val	p.A128V	ENST00000359303	NM_003535.2	128	gCg/gTg																																																																														
RAC1	0	MSKCC	GRCh37	7	6414378	6414378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			741	112	199	0	ENST00000356142.4:c.12C>G	p.Ile4Met	p.I4M	ENST00000356142	NM_018890.3	4	atC/atG																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485256	8485256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	124	680	0	ENST00000356435.5:c.3124G>A	p.Glu1042Lys	p.E1042K	ENST00000356435		1042	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002839-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			684	170	345	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
MEN1	0	MSKCC	GRCh37	11	64572117	64572117	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002839-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	218	238	0	ENST00000337652.1:c.1537C>T	p.Gln513Ter	p.Q513*	ENST00000337652	NM_130803.2	513	Cag/Tag																																																																														
ATRX	0	MSKCC	GRCh37	X	76920263	76920263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002839-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	393	424	0	ENST00000373344.5:c.3814G>C	p.Ala1272Pro	p.A1272P	ENST00000373344	NM_000489.3	1272	Gcc/Ccc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002846-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			948	49	353	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
XPO1	0	MSKCC	GRCh37	2	61725999	61725999	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0002849-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	72	474	0	ENST00000401558.2:c.639+1G>C		p.X213_splice	ENST00000401558	NM_003400.3	213																																																																															
PTEN	0	MSKCC	GRCh37	10	89725099	89725099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002849-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	24	142	0	ENST00000371953.3:c.1082G>A	p.Ser361Asn	p.S361N	ENST00000371953	NM_000314.4	361	aGt/aAt																																																																														
BLM	0	MSKCC	GRCh37	15	91312689	91312689	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002849-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	60	460	0	ENST00000355112.3:c.2428G>C	p.Asp810His	p.D810H	ENST00000355112	NM_000057.2	810	Gat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			612	176	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0002852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	59	336	0	ENST00000257430.4:c.4127_4128delAT	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t																																																																														
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	72	441	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0002852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	81	406	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	9	294	0	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			529	80	441	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	63	338	2	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																																																														
INSR	0	MSKCC	GRCh37	19	7174662	7174662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			570	60	502	0	ENST00000302850.5:c.1055C>T	p.Thr352Met	p.T352M	ENST00000302850	NM_000208.2	352	aCg/aTg																																																																														
ATRX	0	MSKCC	GRCh37	X	76891541	76891541	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	76	450	0	ENST00000373344.5:c.4564G>T	p.Glu1522Ter	p.E1522*	ENST00000373344	NM_000489.3	1522	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			586	72	229	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105709	27105709	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			568	42	220	0	ENST00000324856.7:c.5320G>C	p.Glu1774Gln	p.E1774Q	ENST00000324856	NM_006015.4	1774	Gaa/Caa																																																																														
MYCL1	0	MSKCC	GRCh37	1	40366972	40366972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			590	55	239	0	ENST00000397332.2:c.225G>T	p.Trp75Cys	p.W75C	ENST00000397332	NM_001033082.2	75	tgG/tgT																																																																														
TET2	0	MSKCC	GRCh37	4	106155278	106155278	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	76	294	0	ENST00000380013.4:c.179A>T	p.Tyr60Phe	p.Y60F	ENST00000380013	NM_001127208.2	60	tAt/tTt																																																																														
ESR1	0	MSKCC	GRCh37	6	152265457	152265457	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			750	79	213	0	ENST00000206249.3:c.910A>C	p.Asn304His	p.N304H	ENST00000206249	NM_000125.3	304	Aac/Cac																																																																														
TET1	0	MSKCC	GRCh37	10	70333096	70333096	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			899	73	404	0	ENST00000373644.4:c.1001C>G	p.Ser334Ter	p.S334*	ENST00000373644	NM_030625.2	334	tCa/tGa																																																																														
RB1	0	MSKCC	GRCh37	13	49030368	49030368	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	128	248	0	ENST00000267163.4:c.1843A>T	p.Lys615Ter	p.K615*	ENST00000267163	NM_000321.2	615	Aaa/Taa																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39550367	39550367	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	54	307	0	ENST00000262039.4:c.478C>G	p.Pro160Ala	p.P160A	ENST00000262039	NM_002647.2	160	Cct/Gct																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877381	40877381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	75	206	0	ENST00000373198.4:c.2315G>A	p.Gly772Asp	p.G772D	ENST00000373198	NM_133170.3	772	gGc/gAc																																																																														
MED12	0	MSKCC	GRCh37	X	70356443	70356443	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002879-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			953	65	326	0	ENST00000374080.3:c.5338G>T	p.Glu1780Ter	p.E1780*	ENST00000374080		1780	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002917-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	70	793	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
REL	0	MSKCC	GRCh37	2	61149324	61149324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002917-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	28	604	2	ENST00000295025.8:c.1514G>A	p.Ser505Asn	p.S505N	ENST00000295025	NM_002908.2	505	aGc/aAc																																																																														
TERT	0	MSKCC	GRCh37	5	1254540	1254540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002917-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	20	704	0	ENST00000310581.5:c.3238C>T	p.Leu1080Phe	p.L1080F	ENST00000310581	NM_198253.2	1080	Ctc/Ttc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459632	149459632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002917-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	23	741	0	ENST00000286301.3:c.575G>T	p.Arg192Leu	p.R192L	ENST00000286301	NM_005211.3	192	cGg/cTg																																																																														
MLL3	0	MSKCC	GRCh37	7	151842316	151842316	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002917-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	42	698	0	ENST00000262189.6:c.14096T>C	p.Leu4699Pro	p.L4699P	ENST00000262189	NM_170606.2	4699	cTt/cCt																																																																														
STK11	0	MSKCC	GRCh37	19	1207198	1207198	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002917-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	47	431	0	ENST00000326873.7:c.286A>T	p.Lys96Ter	p.K96*	ENST00000326873	NM_000455.4	96	Aag/Tag																																																																														
VHL	0	MSKCC	GRCh37	3	10188240	10188240	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	116	382	0	ENST00000256474.2:c.383T>A	p.Leu128His	p.L128H	ENST00000256474	NM_000551.3	128	cTt/cAt																																																																														
JAK1	0	MSKCC	GRCh37	1	65307186	65307187	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	102	378	0	ENST00000342505.4:c.2501dup	p.Arg835GlufsTer12	p.R835Efs*12	ENST00000342505	NM_002227.2	834	cag/caAg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002990-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			443	333	451	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
AR	0	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002990-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			110	434	281	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
MLL2	0	MSKCC	GRCh37	12	49421807	49421808	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0002990-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			933	639	912	0	ENST00000301067.7:c.14499_14500delGG	p.Glu4834SerfsTer2	p.E4834Sfs*2	ENST00000301067	NM_003482.3	4833	ggGGaa/ggaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	220	608	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ABL1	0	MSKCC	GRCh37	9	133730365	133730365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	92	461	0	ENST00000318560.5:c.431G>A	p.Gly144Glu	p.G144E	ENST00000318560	NM_005157.4	144	gGg/gAg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11101986	11101986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	55	346	0	ENST00000344626.4:c.1406G>T	p.Arg469Leu	p.R469L	ENST00000344626	NM_003072.3	469	cGg/cTg																																																																														
JAK3	0	MSKCC	GRCh37	19	17954648	17954648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	77	443	1	ENST00000458235.1:c.246C>A	p.Phe82Leu	p.F82L	ENST00000458235	NM_000215.3	82	ttC/ttA																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003027-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	43	410	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003030-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	135	304	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003030-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	254	270	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
TERT	0	MSKCC	GRCh37	5	1271315	1271315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003030-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	227	257	1	ENST00000310581.5:c.2387C>A	p.Ser796Tyr	p.S796Y	ENST00000310581	NM_198253.2	796	tCc/tAc																																																																														
ARID2	0	MSKCC	GRCh37	12	46246473	46246473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003030-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	30	310	0	ENST00000334344.6:c.4567G>A	p.Asp1523Asn	p.D1523N	ENST00000334344	NM_152641.2	1523	Gat/Aat																																																																														
BRCA2	0	MSKCC	GRCh37	13	32954039	32954039	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs202155613		P-0003030-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			797	42	406	0	ENST00000380152.3:c.9106C>G	p.Gln3036Glu	p.Q3036E	ENST00000380152		3036	Caa/Gaa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144114	11144114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003030-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	250	321	0	ENST00000344626.4:c.3695G>T	p.Gly1232Val	p.G1232V	ENST00000344626	NM_003072.3	1232	gGc/gTc																																																																														
BRD4	0	MSKCC	GRCh37	19	15349730	15349730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	118	128	0	ENST00000263377.2:c.3844C>T	p.Arg1282Cys	p.R1282C	ENST00000263377	NM_058243.2	1282	Cgc/Tgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187630172	187630172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	108	258	0	ENST00000441802.2:c.810C>A	p.Asp270Glu	p.D270E	ENST00000441802	NM_005245.3	270	gaC/gaA																																																																														
STAT3	0	MSKCC	GRCh37	17	40475078	40475078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	463	548	0	ENST00000264657.5:c.1832G>T	p.Ser611Ile	p.S611I	ENST00000264657	NM_139276.2	611	aGt/aTt																																																																														
FLT3	0	MSKCC	GRCh37	13	28608039	28608039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	30	593	1	ENST00000241453.7:c.1927G>A	p.Val643Ile	p.V643I	ENST00000241453	NM_004119.2	643	Gtc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			46	304	297	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			441	29	160	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			303	288	107	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			307	464	501	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
PTEN	0	MSKCC	GRCh37	10	89685287	89685287	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1518	164	166	0	ENST00000371953.3:c.182A>G	p.His61Arg	p.H61R	ENST00000371953	NM_000314.4	61	cAt/cGt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098380	11098380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			587	298	556	0	ENST00000344626.4:c.898C>T	p.Gln300Ter	p.Q300*	ENST00000344626	NM_003072.3	300	Cag/Tag																																																																														
PARP1	0	MSKCC	GRCh37	1	226558219	226558219	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	151	379	0	ENST00000366794.5:c.2071-1G>C		p.X691_splice	ENST00000366794	NM_001618.3	691																																																																															
APC	0	MSKCC	GRCh37	5	112178121	112178121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			713	224	433	0	ENST00000257430.4:c.6830C>T	p.Ser2277Phe	p.S2277F	ENST00000257430	NM_000038.5	2277	tCt/tTt																																																																														
ROS1	0	MSKCC	GRCh37	6	117632205	117632205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			732	226	410	1	ENST00000368508.3:c.6211G>A	p.Glu2071Lys	p.E2071K	ENST00000368508	NM_002944.2	2071	Gaa/Aaa																																																																														
ETV1	0	MSKCC	GRCh37	7	14017054	14017054	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			888	91	249	0	ENST00000405192.2:c.233G>A	p.Ser78Asn	p.S78N	ENST00000405192	NM_001163147.1	78	aGt/aAt																																																																														
CCND1	0	MSKCC	GRCh37	11	69456106	69456106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			995	212	499	1	ENST00000227507.2:c.25G>A	p.Glu9Lys	p.E9K	ENST00000227507	NM_053056.2	9	Gaa/Aaa																																																																														
MLL2	0	MSKCC	GRCh37	12	49444286	49444286	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1755	330	808	1	ENST00000301067.7:c.3085C>T	p.Gln1029Ter	p.Q1029*	ENST00000301067	NM_003482.3	1029	Cag/Tag																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871602	35871602	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs116801398		P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			539	252	531	0	ENST00000216797.5:c.904G>A	p.Glu302Lys	p.E302K	ENST00000216797	NM_020529.2	302	Gag/Aag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061115	38061115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			67	44	54	0	ENST00000250448.2:c.874G>A	p.Glu292Lys	p.E292K	ENST00000250448	NM_004496.3	292	Gag/Aag																																																																														
MEF2B	0	MSKCC	GRCh37	19	19256730	19256730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			729	72	405	0	ENST00000162023.5:c.983G>T	p.Gly328Val	p.G328V	ENST00000162023		328	gGg/gTg																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0003054-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			696	400	453	1	ENST00000256078.4:c.182_183inv	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTT																																																																														
FAT1	0	MSKCC	GRCh37	4	187540161	187540161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	467	324	2	ENST00000441802.2:c.7579G>A	p.Val2527Ile	p.V2527I	ENST00000441802	NM_005245.3	2527	Gtt/Att																																																																														
JAK1	0	MSKCC	GRCh37	1	65321371	65321371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	113	189	0	ENST00000342505.4:c.1469G>C	p.Gly490Ala	p.G490A	ENST00000342505	NM_002227.2	490	gGt/gCt																																																																														
TP63	0	MSKCC	GRCh37	3	189604265	189604265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	378	335	0	ENST00000264731.3:c.1432G>C	p.Val478Leu	p.V478L	ENST00000264731	NM_003722.4	478	Gtg/Ctg																																																																														
IL7R	0	MSKCC	GRCh37	5	35876553	35876553	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	172	164	0	ENST00000303115.3:c.1345T>A	p.Tyr449Asn	p.Y449N	ENST00000303115	NM_002185.3	449	Tat/Aat																																																																														
EGFR	0	MSKCC	GRCh37	7	55220275	55220275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	240	261	3	ENST00000275493.2:c.665G>A	p.Arg222His	p.R222H	ENST00000275493	NM_005228.3	222	cGc/cAc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17742885	17742885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	156	170	0	ENST00000250003.3:c.793G>T	p.Ala265Ser	p.A265S	ENST00000250003	NM_002478.4	265	Gcg/Tcg																																																																														
LATS2	0	MSKCC	GRCh37	13	21563318	21563318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	138	251	0	ENST00000382592.4:c.601C>T	p.Pro201Ser	p.P201S	ENST00000382592	NM_014572.2	201	Ccc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	129	307	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	26	224	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
BRAF	0	MSKCC	GRCh37	7	140481393	140481393	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	33	332	0	ENST00000288602.6:c.1415A>C	p.Tyr472Ser	p.Y472S	ENST00000288602	NM_004333.4	472	tAc/tCc																																																																														
APC	324	MSKCC	GRCh37	5	112175351	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0003154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	66	243	0	ENST00000257430.4:c.4062_4063del	p.Ser1355PhefsTer19	p.S1355Ffs*19	ENST00000257430	NM_000038.5	1354	TTt/t																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	14	212	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	27	276	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	37	150	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
NSD1	0	MSKCC	GRCh37	5	176721579	176721579	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	60	267	0	ENST00000439151.2:c.7210G>C	p.Asp2404His	p.D2404H	ENST00000439151	NM_022455.4	2404	Gac/Cac																																																																														
MLL2	0	MSKCC	GRCh37	12	49425121	49425121	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	78	382	0	ENST00000301067.7:c.13367C>G	p.Ser4456Ter	p.S4456*	ENST00000301067	NM_003482.3	4456	tCa/tGa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822211	72822211	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	79	575	0	ENST00000268489.5:c.9964C>T	p.Gln3322Ter	p.Q3322*	ENST00000268489	NM_006885.3	3322	Cag/Tag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938460	44938460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	91	257	0	ENST00000377967.4:c.3008A>C	p.Gln1003Pro	p.Q1003P	ENST00000377967	NM_021140.2	1003	cAg/cCg																																																																														
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0003190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	14	135	0				ENST00000310581	NM_198253.2																																																																																
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	122	156	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20159754	20159754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003197-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			18	318	102	0	ENST00000379607.5:c.5C>T	p.Pro2Leu	p.P2L	ENST00000379607	NM_001412.3	2	cCc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	31	285	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	283	303	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																														
KIT	0	MSKCC	GRCh37	4	55573302	55573302	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs147540142		P-0003212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	225	278	0	ENST00000288135.5:c.964A>G	p.Thr322Ala	p.T322A	ENST00000288135	NM_000222.2	322	Aca/Gca																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0003219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	18	278	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	25	168	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																														
VTCN1	0	MSKCC	GRCh37	1	117690318	117690318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	57	272	0	ENST00000369458.3:c.811G>T	p.Ala271Ser	p.A271S	ENST00000369458	NM_024626.3	271	Gca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	27	391	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	14	402	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	279	386	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0003255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	50	132	0				ENST00000310581	NM_198253.2																																																																																
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0003255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	130	371	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
ASXL2	0	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	138	509	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																																																														
IL7R	0	MSKCC	GRCh37	5	35871172	35871172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	81	254	0	ENST00000303115.3:c.394C>T	p.Pro132Ser	p.P132S	ENST00000303115	NM_002185.3	132	Cct/Tct																																																																														
EPHA7	0	MSKCC	GRCh37	6	93969137	93969137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	155	617	0	ENST00000369303.4:c.1859C>T	p.Ala620Val	p.A620V	ENST00000369303	NM_004440.3	620	gCt/gTt																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553189	106553189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	85	300	0	ENST00000369096.4:c.1154G>A	p.Gly385Asp	p.G385D	ENST00000369096	NM_001198.3	385	gGt/gAt																																																																														
MLL3	0	MSKCC	GRCh37	7	151949069	151949069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	137	427	0	ENST00000262189.6:c.1576C>T	p.Arg526Cys	p.R526C	ENST00000262189	NM_170606.2	526	Cgt/Tgt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858267	9858267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	80	321	0	ENST00000330684.3:c.3134C>T	p.Ser1045Phe	p.S1045F	ENST00000330684	NM_001134407.1	1045	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0003255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	78	259	0	ENST00000269305.4:c.782+1G>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
PTEN	0	MSKCC	GRCh37	10	89692715	89692769	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	AATTAAAAATTCAAGAGTTTTTTTTTCTTATTCTGAGGTTATCTTTTTACCACAG	AATTAAAAATTCAAGAGTTTTTTTTTCTTATTCTGAGGTTATCTTTTTACCACAG	-			P-0003255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	68	117	0	ENST00000371953.3:c.254-55_254-1del		p.X85_splice	ENST00000371953	NM_000314.4	85																																																																															
TNFAIP3	0	MSKCC	GRCh37	6	138199958	138199958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	154	180	0	ENST00000237289.4:c.1376C>T	p.Ser459Leu	p.S459L	ENST00000237289	NM_001270507.1	459	tCg/tTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212286761	212286761	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	90	239	0	ENST00000342788.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000342788	NM_005235.2	979	Cga/Tga																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528575	89528575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	95	229	0	ENST00000336596.2:c.2875G>T	p.Val959Phe	p.V959F	ENST00000336596	NM_005233.5	959	Gtt/Ttt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201845	66201845	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	153	189	0	ENST00000273854.3:c.2659-2A>T		p.X887_splice	ENST00000273854	NM_004439.5	887																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32190582	32190582	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	70	189	0	ENST00000375023.3:c.157T>A	p.Cys53Ser	p.C53S	ENST00000375023	NM_004557.3	53	Tgt/Agt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	53	95	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	53	95	0	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66774104	66774104	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	102	246	0	ENST00000307102.5:c.580T>G	p.Ser194Ala	p.S194A	ENST00000307102	NM_002755.3	194	Tcc/Gcc																																																																														
PALB2	0	MSKCC	GRCh37	16	23646611	23646611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	143	253	0	ENST00000261584.4:c.1256G>T	p.Cys419Phe	p.C419F	ENST00000261584	NM_024675.3	419	tGc/tTc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59760667	59760667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	236	347	0	ENST00000259008.2:c.3740G>C	p.Gly1247Ala	p.G1247A	ENST00000259008	NM_032043.2	1247	gGt/gCt																																																																														
INSR	0	MSKCC	GRCh37	19	7120721	7120721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	217	426	0	ENST00000302850.5:c.3569A>G	p.Tyr1190Cys	p.Y1190C	ENST00000302850	NM_000208.2	1190	tAc/tGc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735560	40735560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	71	217	0	ENST00000373198.4:c.3313G>T	p.Ala1105Ser	p.A1105S	ENST00000373198	NM_133170.3	1105	Gct/Tct																																																																														
TP53	0	MSKCC	GRCh37	17	7576899	7576900	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	146	295	0	ENST00000269305.4:c.946_947insT	p.Pro316LeufsTer21	p.P316Lfs*21	ENST00000269305	NM_001126112.2	316	ccc/cTcc																																																																														
BRAF	0	MSKCC	GRCh37	7	140453138	140453139	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	612	281	0	ENST00000288602.6:c.1794_1796dupTAC	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	aca/acTACa																																																																														
ARID2	0	MSKCC	GRCh37	12	46231416	46231416	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	128	307	0	ENST00000334344.6:c.1256del	p.Leu419ProfsTer21	p.L419Pfs*21	ENST00000334344	NM_152641.2	419	cTc/cc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971112	+	missense_variant	Missense_Mutation	DNP	GC	GC	TG			P-0003278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	53	95	0	ENST00000304494.5:c.246_247delinsCA	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	82	gtGCac/gtCAac																																																																														
DNMT1	0	MSKCC	GRCh37	19	10248621	10248621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	104	222	2	ENST00000340748.4:c.4132C>T	p.Arg1378Trp	p.R1378W	ENST00000340748		1378	Cgg/Tgg																																																																														
MTOR	0	MSKCC	GRCh37	1	11194409	11194409	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0003281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	268	215	0	ENST00000361445.4:c.5245C>T	p.Arg1749Ter	p.R1749*	ENST00000361445	NM_004958.3	1749	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106421	27106421	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	207	211	0	ENST00000324856.7:c.6032T>G	p.Leu2011Arg	p.L2011R	ENST00000324856	NM_006015.4	2011	cTg/cGg																																																																														
AR	0	MSKCC	GRCh37	X	66766322	66766322	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	150	84	0	ENST00000374690.3:c.1334A>C	p.Gln445Pro	p.Q445P	ENST00000374690	NM_000044.3	445	cAg/cCg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161243	56161243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	81	339	0	ENST00000399503.3:c.1112C>T	p.Ser371Leu	p.S371L	ENST00000399503	NM_005921.1	371	tCa/tTa																																																																														
CARD11	0	MSKCC	GRCh37	7	2983911	2983911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	131	442	0	ENST00000396946.4:c.619C>T	p.Arg207Cys	p.R207C	ENST00000396946	NM_032415.4	207	Cgc/Tgc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101904913	101904913	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	166	286	0	ENST00000374994.4:c.902del	p.Gly301GlufsTer2	p.G301Efs*2	ENST00000374994	NM_004612.2	301	Gga/ga																																																																														
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0003285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	140	339	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																														
APC	0	MSKCC	GRCh37	5	112175764	112175765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	107	244	0	ENST00000257430.4:c.4473_4474insA	p.Ala1492SerfsTer22	p.A1492Sfs*22	ENST00000257430	NM_000038.5	1491	-/A																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	20	63	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0003291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	32	237	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	38	143	0	ENST00000371953.3:c.389delG	p.Arg130GlnfsTer4	p.R130Qfs*4	ENST00000371953	NM_000314.4	130	cGa/ca																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64127749	64127749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	25	140	0	ENST00000334205.4:c.242A>C	p.His81Pro	p.H81P	ENST00000334205	NM_003942.2	81	cAc/cCc																																																																														
TP53	0	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	33	352	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577552	7577607	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCAA	CATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCAA	-			P-0003291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	21	178	0	ENST00000269305.4:c.674_729del	p.Val225GlyfsTer20	p.V225Gfs*20	ENST00000269305	NM_001126112.2	225	gTTGGCTCTGACTGTACCACCATCCACTACAACTACATGTGTAACAGTTCCTGCATG/g																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	295	275	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	57	141	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	238	277	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
APC	0	MSKCC	GRCh37	5	112175060	112175060	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	85	199	0	ENST00000257430.4:c.3769G>T	p.Glu1257Ter	p.E1257*	ENST00000257430	NM_000038.5	1257	Gaa/Taa																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871036	12871036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	27	185	0	ENST00000228872.4:c.263A>G	p.Tyr88Cys	p.Y88C	ENST00000228872	NM_004064.3	88	tAc/tGc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	422	598	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																														
SOX9	0	MSKCC	GRCh37	17	70120181	70120182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0003298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	145	198	0	ENST00000245479.2:c.1185_1186dup	p.His396ArgfsTer8	p.H396Rfs*8	ENST00000245479	NM_000346.3	395	acg/aCGcg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	156	316	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
MGA	0	MSKCC	GRCh37	15	42042342	42042342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	141	666	2	ENST00000219905.7:c.6537G>T	p.Lys2179Asn	p.K2179N	ENST00000219905	NM_001164273.1	2179	aaG/aaT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	149	416	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	209	481	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158408	26158408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	60	359	2	ENST00000289316.2:c.11C>A	p.Pro4His	p.P4H	ENST00000289316	NM_138720.2	4	cCt/cAt																																																																														
ATM	0	MSKCC	GRCh37	11	108165786	108165786	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0003316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	64	370	0	ENST00000278616.4:c.4909G>T	p.Asp1637Tyr	p.D1637Y	ENST00000278616	NM_000051.3	1637	Gat/Tat																																																																														
BCOR	0	MSKCC	GRCh37	X	39921394	39921394	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0003316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	42	366	0	ENST00000378444.4:c.4426G>T	p.Glu1476Ter	p.E1476*	ENST00000378444	NM_001123385.1	1476	Gag/Tag																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14626759	14626759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	44	340	0	ENST00000254322.2:c.1016C>T	p.Pro339Leu	p.P339L	ENST00000254322	NM_006145.1	339	cCa/cTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	75	80	0				ENST00000310581	NM_198253.2																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0003352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	254	229	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	490	299	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15297716	15297716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	386	386	0	ENST00000263388.2:c.1924G>A	p.Asp642Asn	p.D642N	ENST00000263388	NM_000435.2	642	Gac/Aac																																																																														
ERCC2	0	MSKCC	GRCh37	19	45868416	45868416	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	215	267	0	ENST00000391945.4:c.361G>A	p.Val121Met	p.V121M	ENST00000391945	NM_000400.3	121	Gtg/Atg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44870250	44870250	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	347	228	0	ENST00000377967.4:c.429T>A	p.Tyr143Ter	p.Y143*	ENST00000377967	NM_021140.2	143	taT/taA																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	182	180	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	106	141	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120484250	120484250	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	265	355	0	ENST00000256646.2:c.2880T>G	p.Asn960Lys	p.N960K	ENST00000256646	NM_024408.3	960	aaT/aaG																																																																														
PBRM1	0	MSKCC	GRCh37	3	52623167	52623167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	143	354	0	ENST00000394830.3:c.2884G>T	p.Asp962Tyr	p.D962Y	ENST00000394830	NM_018313.4	962	Gat/Tat																																																																														
SETD2	0	MSKCC	GRCh37	3	47143040	47143042	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0003366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	103	315	0	ENST00000409792.3:c.4921_4923del	p.Thr1641del	p.T1641del	ENST00000409792	NM_014159.6	1641	ACT/-																																																																														
VHL	0	MSKCC	GRCh37	3	10191645	10191646	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	84	204	0	ENST00000256474.2:c.640dupT	p.Ter214LeufsTer42	p.*214Lfs*42	ENST00000256474	NM_000551.3	213	gat/gaTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0003395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	119	267	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508394	106508394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	35	125	0	ENST00000359195.3:c.388C>T	p.Arg130Trp	p.R130W	ENST00000359195	NM_002649.2	130	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	35	322	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
INHBA	0	MSKCC	GRCh37	7	41729496	41729496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	227	612	0	ENST00000242208.4:c.1033T>A	p.Tyr345Asn	p.Y345N	ENST00000242208	NM_002192.2	345	Tat/Aat																																																																														
MLL	0	MSKCC	GRCh37	11	118343055	118343055	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	84	165	0	ENST00000534358.1:c.1181T>G	p.Leu394Arg	p.L394R	ENST00000534358	NM_005933.3	394	cTg/cGg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16068294	16068315	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGTTTCTTTTTCAGTTTAAGGA	TGTTTCTTTTTCAGTTTAAGGA	-			P-0003400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	28	124	0	ENST00000268712.3:c.596_617del	p.Ile199AsnfsTer79	p.I199Nfs*79	ENST00000268712	NM_006311.3	199	aTCCTTAAACTGAAAAAGAAACAa/aa																																																																														
ABL1	0	MSKCC	GRCh37	9	133760542	133760543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	86	477	0	ENST00000318560.5:c.2870dup	p.Pro958AlafsTer88	p.P958Afs*88	ENST00000318560	NM_005157.4	955	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0003407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	34	356	0	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
ERBB3	0	MSKCC	GRCh37	12	56488225	56488225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	82	536	0	ENST00000267101.3:c.1744G>T	p.Gly582Trp	p.G582W	ENST00000267101	NM_001982.3	582	Ggg/Tgg																																																																														
STAG2	0	MSKCC	GRCh37	X	123195701	123195701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	47	934	0	ENST00000218089.9:c.1615G>A	p.Val539Met	p.V539M	ENST00000218089	NM_001042749.1	539	Gtg/Atg																																																																														
MTOR	0	MSKCC	GRCh37	1	11217302	11217302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	78	366	0	ENST00000361445.4:c.4376C>A	p.Ala1459Asp	p.A1459D	ENST00000361445	NM_004958.3	1459	gCc/gAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55220265	55220265	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	84	434	0	ENST00000275493.2:c.655T>G	p.Cys219Gly	p.C219G	ENST00000275493	NM_005228.3	219	Tgc/Ggc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52712515	52712515	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0003417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	83	366	0	ENST00000394830.3:c.236+1G>A		p.X79_splice	ENST00000394830	NM_018313.4	79																																																																															
MLL3	0	MSKCC	GRCh37	7	151851366	151851366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	60	262	0	ENST00000262189.6:c.12125G>A	p.Ser4042Asn	p.S4042N	ENST00000262189	NM_170606.2	4042	aGc/aAc																																																																														
TET1	0	MSKCC	GRCh37	10	70406705	70406705	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	48	262	0	ENST00000373644.4:c.4219A>C	p.Thr1407Pro	p.T1407P	ENST00000373644	NM_030625.2	1407	Aca/Cca																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435578	18435578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	64	230	0	ENST00000266497.5:c.563C>T	p.Pro188Leu	p.P188L	ENST00000266497		188	cCg/cTg																																																																														
CBL	0	MSKCC	GRCh37	11	119103244	119103244	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	60	246	0	ENST00000264033.4:c.282del	p.Leu95SerfsTer28	p.L95Sfs*28	ENST00000264033	NM_005188.3	94	caT/ca																																																																														
VHL	0	MSKCC	GRCh37	3	10188317	10188317	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	55	254	1	ENST00000256474.2:c.461del	p.Pro154GlnfsTer5	p.P154Qfs*5	ENST00000256474	NM_000551.3	154	Cca/ca																																																																														
TET2	0	MSKCC	GRCh37	4	106156610	106156613	+	frameshift_variant	Frame_Shift_Del	DEL	AAAC	AAAC	-			P-0003417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	56	368	0	ENST00000380013.4:c.1513_1516del	p.Thr505AspfsTer27	p.T505Dfs*27	ENST00000380013	NM_001127208.2	504	aAAACa/aa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240792	53240797	+	inframe_deletion	In_Frame_Del	DEL	TTACCA	TTACCA	-			P-0003417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	87	278	0	ENST00000375401.3:c.1283_1288del	p.Leu428_Asn430delinsHis	p.L428_N430delinsH	ENST00000375401	NM_004187.3	428	cTGGTAAat/cat																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	283	650	0	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729980	30729980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	53	340	0	ENST00000359013.4:c.1576C>A	p.Pro526Thr	p.P526T	ENST00000359013	NM_001024847.2	526	Ccc/Acc																																																																														
ROS1	0	MSKCC	GRCh37	6	117710818	117710818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	185	644	0	ENST00000368508.3:c.1454C>A	p.Ser485Tyr	p.S485Y	ENST00000368508	NM_002944.2	485	tCt/tAt																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467637	50467637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	43	396	0	ENST00000331340.3:c.872C>T	p.Thr291Met	p.T291M	ENST00000331340	NM_006060.4	291	aCg/aTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9927968	9927968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	49	641	0	ENST00000330684.3:c.1771G>T	p.Gly591Trp	p.G591W	ENST00000330684	NM_001134407.1	591	Ggg/Tgg																																																																														
MYC	0	MSKCC	GRCh37	8	128750529	128750531	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0003423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	158	720	0	ENST00000377970.2:c.68_70del	p.Thr23del	p.T23del	ENST00000377970	NM_002467.4	22	ttCACc/ttc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	180	141	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	148	333	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	84	159	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
BCOR	0	MSKCC	GRCh37	X	39921606	39921606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	389	235	0	ENST00000378444.4:c.4214C>T	p.Ser1405Leu	p.S1405L	ENST00000378444	NM_001123385.1	1405	tCg/tTg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78820291	78820291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	281	364	0	ENST00000306801.3:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000306801	NM_020761.2	411	Gag/Aag																																																																														
BAP1	0	MSKCC	GRCh37	3	52440379	52440379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	415	255	0	ENST00000460680.1:c.673G>A	p.Asp225Asn	p.D225N	ENST00000460680	NM_004656.3	225	Gac/Aac																																																																														
PMS2	0	MSKCC	GRCh37	7	6048638	6048638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	272	333	0	ENST00000265849.7:c.13G>A	p.Glu5Lys	p.E5K	ENST00000265849	NM_000535.5	5	Gag/Aag																																																																														
MPL	0	MSKCC	GRCh37	1	43814530	43814530	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	262	321	0	ENST00000372470.3:c.1325T>G	p.Leu442Arg	p.L442R	ENST00000372470	NM_005373.2	442	cTc/cGc																																																																														
NRAS	0	MSKCC	GRCh37	1	115256542	115256542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	234	392	0	ENST00000369535.4:c.169G>A	p.Asp57Asn	p.D57N	ENST00000369535	NM_002524.4	57	Gat/Aat																																																																														
FH	0	MSKCC	GRCh37	1	241683007	241683007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	202	260	0	ENST00000366560.3:c.16C>T	p.Arg6Trp	p.R6W	ENST00000366560	NM_000143.3	6	Cgg/Tgg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25505454	25505454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	319	384	0	ENST00000264709.3:c.304G>A	p.Glu102Lys	p.E102K	ENST00000264709	NM_175629.2	102	Gag/Aag																																																																														
ALK	0	MSKCC	GRCh37	2	30143521	30143521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	58	73	0	ENST00000389048.3:c.5G>A	p.Gly2Glu	p.G2E	ENST00000389048	NM_004304.4	2	gGa/gAa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178097188	178097188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	178	407	0	ENST00000397062.3:c.526G>A	p.Asp176Asn	p.D176N	ENST00000397062	NM_006164.4	176	Gat/Aat																																																																														
RAF1	0	MSKCC	GRCh37	3	12650326	12650326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	206	481	0	ENST00000251849.4:c.520G>A	p.Glu174Lys	p.E174K	ENST00000251849	NM_002880.3	174	Gag/Aag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41277969	41277969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	182	443	0	ENST00000349496.5:c.1933C>T	p.His645Tyr	p.H645Y	ENST00000349496	NM_001904.3	645	Cac/Tac																																																																														
MST1R	0	MSKCC	GRCh37	3	49939929	49939929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	1023	695	0	ENST00000296474.3:c.1114G>A	p.Asp372Asn	p.D372N	ENST00000296474	NM_002447.2	372	Gac/Aac																																																																														
BAP1	0	MSKCC	GRCh37	3	52441976	52441976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	294	289	0	ENST00000460680.1:c.373G>A	p.Glu125Lys	p.E125K	ENST00000460680	NM_004656.3	125	Gag/Aag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52713693	52713693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	152	364	0	ENST00000394830.3:c.35C>T	p.Ser12Phe	p.S12F	ENST00000394830	NM_018313.4	12	tCc/tTc																																																																														
ATR	0	MSKCC	GRCh37	3	142186793	142186793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	174	348	0	ENST00000350721.4:c.6670G>A	p.Glu2224Lys	p.E2224K	ENST00000350721	NM_001184.3	2224	Gaa/Aaa																																																																														
TET2	0	MSKCC	GRCh37	4	106155502	106155502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	163	324	0	ENST00000380013.4:c.403G>A	p.Glu135Lys	p.E135K	ENST00000380013	NM_001127208.2	135	Gaa/Aaa																																																																														
TET2	0	MSKCC	GRCh37	4	106157213	106157213	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	191	345	0	ENST00000380013.4:c.2114A>C	p.Gln705Pro	p.Q705P	ENST00000380013	NM_001127208.2	705	cAa/cCa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153250916	153250916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	163	381	0	ENST00000281708.4:c.1144C>T	p.His382Tyr	p.H382Y	ENST00000281708	NM_033632.3	382	Cat/Tat																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56184094	56184094	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	212	433	0	ENST00000399503.3:c.4299G>A	p.Trp1433Ter	p.W1433*	ENST00000399503	NM_005921.1	1433	tgG/tgA																																																																														
NPM1	0	MSKCC	GRCh37	5	170819963	170819963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	147	284	0	ENST00000296930.5:c.505G>A	p.Glu169Lys	p.E169K	ENST00000296930	NM_002520.6	169	Gaa/Aaa																																																																														
FLT4	0	MSKCC	GRCh37	5	180058707	180058707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	224	365	0	ENST00000261937.6:c.130G>A	p.Gly44Ser	p.G44S	ENST00000261937	NM_182925.4	44	Ggt/Agt																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271321	26271321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	609	897	1	ENST00000305910.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000305910	NM_003534.2	98	Gag/Aag																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066561	94066561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	91	632	0	ENST00000369303.4:c.1198G>C	p.Val400Leu	p.V400L	ENST00000369303	NM_004440.3	400	Gtc/Ctc																																																																														
FYN	0	MSKCC	GRCh37	6	112015881	112015881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	256	583	0	ENST00000368678.4:c.1060G>A	p.Gly354Arg	p.G354R	ENST00000368678		354	Gga/Aga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157502230	157502230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	264	323	0	ENST00000346085.5:c.3263C>T	p.Ser1088Leu	p.S1088L	ENST00000346085	NM_020732.3	1088	tCa/tTa																																																																														
MET	0	MSKCC	GRCh37	7	116380960	116380960	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	286	470	0	ENST00000397752.3:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000397752	NM_000245.2	528	Caa/Taa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341255	8341255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	93	245	0	ENST00000356435.5:c.4961C>T	p.Ser1654Leu	p.S1654L	ENST00000356435		1654	tCa/tTa																																																																														
FANCC	0	MSKCC	GRCh37	9	97869410	97869410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	373	435	0	ENST00000289081.3:c.1471C>T	p.Leu491Phe	p.L491F	ENST00000289081	NM_000136.2	491	Ctc/Ttc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209514	98209514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	216	281	0	ENST00000331920.6:c.4024C>T	p.Arg1342Cys	p.R1342C	ENST00000331920	NM_000264.3	1342	Cgc/Tgc																																																																														
TSC1	0	MSKCC	GRCh37	9	135797220	135797220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	194	406	0	ENST00000298552.3:c.649G>A	p.Glu217Lys	p.E217K	ENST00000298552	NM_001162426.1	217	Gaa/Aaa																																																																														
CCND1	0	MSKCC	GRCh37	11	69457985	69457985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	322	453	0	ENST00000227507.2:c.385G>A	p.Asp129Asn	p.D129N	ENST00000227507	NM_053056.2	129	Gac/Aac																																																																														
MLL2	0	MSKCC	GRCh37	12	49448392	49448392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	371	528	0	ENST00000301067.7:c.319G>A	p.Glu107Lys	p.E107K	ENST00000301067	NM_003482.3	107	Gag/Aag																																																																														
TBX3	0	MSKCC	GRCh37	12	115118919	115118919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	165	278	0	ENST00000257566.3:c.422C>T	p.Ser141Phe	p.S141F	ENST00000257566	NM_016569.3	141	tCt/tTt																																																																														
POLE	0	MSKCC	GRCh37	12	133202825	133202825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	327	371	0	ENST00000320574.5:c.6409G>A	p.Glu2137Lys	p.E2137K	ENST00000320574	NM_006231.2	2137	Gag/Aag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911589	32911589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	249	610	0	ENST00000380152.3:c.3097G>A	p.Asp1033Asn	p.D1033N	ENST00000380152		1033	Gat/Aat																																																																														
MGA	0	MSKCC	GRCh37	15	42041321	42041321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	203	595	0	ENST00000219905.7:c.5516G>A	p.Gly1839Glu	p.G1839E	ENST00000219905	NM_001164273.1	1839	gGa/gAa																																																																														
BLM	0	MSKCC	GRCh37	15	91293136	91293136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	127	293	0	ENST00000355112.3:c.638C>T	p.Ser213Phe	p.S213F	ENST00000355112	NM_000057.2	213	tCt/tTt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99467776	99467776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	196	384	0	ENST00000268035.6:c.2645G>A	p.Arg882Lys	p.R882K	ENST00000268035	NM_000875.3	882	aGa/aAa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779715	3779715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	226	282	0	ENST00000262367.5:c.5333C>T	p.Ser1778Leu	p.S1778L	ENST00000262367	NM_004380.2	1778	tCg/tTg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81902826	81902826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	171	584	1	ENST00000359376.3:c.487C>A	p.Leu163Ile	p.L163I	ENST00000359376	NM_002661.3	163	Ctc/Atc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349276	89349276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	481	912	1	ENST00000301030.4:c.3674C>T	p.Ser1225Leu	p.S1225L	ENST00000301030	NM_001256183.1	1225	tCa/tTa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351466	89351466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	438	635	0	ENST00000301030.4:c.1484C>T	p.Ser495Phe	p.S495F	ENST00000301030	NM_001256183.1	495	tCt/tTt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983280	15983280	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	172	409	0	ENST00000268712.3:c.3499C>T	p.Gln1167Ter	p.Q1167*	ENST00000268712	NM_006311.3	1167	Cag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29701042	29701042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	124	291	0	ENST00000358273.4:c.8389G>A	p.Glu2797Lys	p.E2797K	ENST00000358273	NM_001042492.2	2797	Gag/Aag																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533164	63533164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	341	420	0	ENST00000307078.5:c.1730C>T	p.Thr577Ile	p.T577I	ENST00000307078	NM_004655.3	577	aCc/aTc																																																																														
MALT1	0	MSKCC	GRCh37	18	56402494	56402494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	250	511	0	ENST00000348428.3:c.1536G>A	p.Met512Ile	p.M512I	ENST00000348428	NM_006785.3	512	atG/atA																																																																														
MALT1	0	MSKCC	GRCh37	18	56414830	56414830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	263	606	0	ENST00000348428.3:c.2231C>T	p.Ser744Leu	p.S744L	ENST00000348428	NM_006785.3	744	tCa/tTa																																																																														
INSR	0	MSKCC	GRCh37	19	7152923	7152923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	202	337	0	ENST00000302850.5:c.2045C>T	p.Ser682Leu	p.S682L	ENST00000302850	NM_000208.2	682	tCg/tTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	349	469	0	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257113	19257113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	110	134	0	ENST00000162023.5:c.850G>A	p.Asp284Asn	p.D284N	ENST00000162023		284	Gat/Aat																																																																														
CIC	0	MSKCC	GRCh37	19	42795752	42795752	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	742	460	0	ENST00000575354.2:c.2741C>A	p.Ser914Ter	p.S914*	ENST00000575354	NM_015125.3	914	tCa/tAa																																																																														
ERCC2	0	MSKCC	GRCh37	19	45860557	45860557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	626	480	0	ENST00000391945.4:c.1450A>G	p.Thr484Ala	p.T484A	ENST00000391945	NM_000400.3	484	Acg/Gcg																																																																														
POLD1	0	MSKCC	GRCh37	19	50918207	50918207	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	311	555	0	ENST00000440232.2:c.2524A>T	p.Asn842Tyr	p.N842Y	ENST00000440232	NM_002691.3	842	Aac/Tac																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022824	31022824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	229	408	0	ENST00000375687.4:c.2309C>T	p.Ser770Leu	p.S770L	ENST00000375687	NM_015338.5	770	tCa/tTa																																																																														
CRLF2	0	MSKCC	GRCh37	X	1325482	1325482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	147	225	0	ENST00000381566.1:c.193G>A	p.Asp65Asn	p.D65N	ENST00000381566		65	Gat/Aat																																																																														
RBM10	0	MSKCC	GRCh37	X	47045783	47045783	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	302	249	0	ENST00000329236.7:c.2430C>G	p.Ile810Met	p.I810M	ENST00000329236	NM_001204466.1	810	atC/atG																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652075	36652100	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGTGTGCGGGGCCTTGGCCTGCCC	AGCGTGTGCGGGGCCTTGGCCTGCCC	-			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	290	414	0	ENST00000244741.5:c.198_223del	p.Arg67AlafsTer13	p.R67Afs*13	ENST00000244741	NM_000389.4	66	gAGCGTGTGCGGGGCCTTGGCCTGCCC/g																																																																														
ABL1	0	MSKCC	GRCh37	9	133760387	133760400	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCCTCTGCAGG	GCAGCCTCTGCAGG	-			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	226	379	0	ENST00000318560.5:c.2711_2724del	p.Ala904GlufsTer31	p.A904Efs*31	ENST00000318560	NM_005157.4	904	GCAGCCTCTGCAGGg/g																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66511534	66511534	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	93	165	2	ENST00000358598.2:c.-6-1G>A		p.X2_splice	ENST00000358598	NM_212471.2	2																																																																															
CUL3	0	MSKCC	GRCh37	2	225379281	225379328	+	splice_donor_variant,intron_variant	Splice_Site	DEL	ATATAATCACTAAAACCAAAACCACAAGAGTAAAGAGAGAAATTTTAC	ATATAATCACTAAAACCAAAACCACAAGAGTAAAGAGAGAAATTTTAC	-			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	166	201	0	ENST00000264414.4:c.539+1_539+48del		p.X180_splice	ENST00000264414	NM_003590.4	180																																																																															
ABL1	0	MSKCC	GRCh37	9	133760412	133760418	+	protein_altering_variant	In_Frame_Del	DEL	GAAAGCC	GAAAGCC	CTTT			P-0003433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	226	356	0	ENST00000318560.5:c.2735_2741delinsCTTT	p.Gly912_Pro914delinsAlaPhe	p.G912_P914delinsAF	ENST00000318560	NM_005157.4	912	gGAAAGCCc/gCTTTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	29	360	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	22	285	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	256	253	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																																																														
RB1	0	MSKCC	GRCh37	13	49039133	49039133	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0003466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	191	152	0	ENST00000267163.4:c.2212-1G>C		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																															
MGA	0	MSKCC	GRCh37	15	42021437	42021437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	154	560	0	ENST00000219905.7:c.3733G>A	p.Glu1245Lys	p.E1245K	ENST00000219905	NM_001164273.1	1245	Gag/Aag																																																																														
PPM1D	0	MSKCC	GRCh37	17	58677801	58677801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	33	264	0	ENST00000305921.3:c.26T>C	p.Val9Ala	p.V9A	ENST00000305921	NM_003620.3	9	gTg/gCg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271918	15271918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	11	98	0	ENST00000263388.2:c.6521G>A	p.Arg2174Gln	p.R2174Q	ENST00000263388	NM_000435.2	2174	cGg/cAg																																																																														
STAG2	0	MSKCC	GRCh37	X	123210293	123210293	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	421	375	0	ENST00000218089.9:c.2645C>G	p.Ala882Gly	p.A882G	ENST00000218089	NM_001042749.1	882	gCt/gGt																																																																														
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0003466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	155	337	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	22	379	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CARD11	0	MSKCC	GRCh37	7	2946302	2946302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	268	358	0	ENST00000396946.4:c.3435G>T	p.Lys1145Asn	p.K1145N	ENST00000396946	NM_032415.4	1145	aaG/aaT																																																																														
GLI1	0	MSKCC	GRCh37	12	57864715	57864715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	404	456	0	ENST00000228682.2:c.2192G>C	p.Gly731Ala	p.G731A	ENST00000228682	NM_005269.2	731	gGa/gCa																																																																														
IDH2	0	MSKCC	GRCh37	15	90631836	90631836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	144	293	0	ENST00000330062.3:c.517C>T	p.His173Tyr	p.H173Y	ENST00000330062	NM_002168.2	173	Cac/Tac																																																																														
ATRX	0	MSKCC	GRCh37	X	76872079	76872079	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0003476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	419	451	0	ENST00000373344.5:c.5566+2T>C		p.X1856_splice	ENST00000373344	NM_000489.3	1856																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	107	443	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	91	585	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
MTOR	0	MSKCC	GRCh37	1	11297917	11297917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	26	389	1	ENST00000361445.4:c.2191C>T	p.Arg731Cys	p.R731C	ENST00000361445	NM_004958.3	731	Cgc/Tgc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	86	427	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc																																																																														
RNF43	0	MSKCC	GRCh37	17	56437605	56437605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	49	261	0	ENST00000407977.2:c.857G>A	p.Arg286Gln	p.R286Q	ENST00000407977		286	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	552	238	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	142	365	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
CUL3	0	MSKCC	GRCh37	2	225378348	225378348	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	145	255	0	ENST00000264414.4:c.547A>G	p.Ile183Val	p.I183V	ENST00000264414	NM_003590.4	183	Ata/Gta																																																																														
ATR	0	MSKCC	GRCh37	3	142224052	142224052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	508	339	0	ENST00000350721.4:c.5125C>T	p.His1709Tyr	p.H1709Y	ENST00000350721	NM_001184.3	1709	Cat/Tat																																																																														
ATR	0	MSKCC	GRCh37	3	142232464	142232464	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	190	253	0	ENST00000350721.4:c.4520C>A	p.Ala1507Asp	p.A1507D	ENST00000350721	NM_001184.3	1507	gCc/gAc																																																																														
TBX3	0	MSKCC	GRCh37	12	115118902	115118928	+	inframe_deletion	In_Frame_Del	DEL	CTTTTTTATCCAGCCCAGAACATCTCA	CTTTTTTATCCAGCCCAGAACATCTCA	-			P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	111	255	0	ENST00000257566.3:c.413_439del	p.Val138_Lys146del	p.V138_K146del	ENST00000257566	NM_016569.3	138	gTGAGATGTTCTGGGCTGGATAAAAAAGcc/gcc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061206	38061217	+	inframe_deletion	In_Frame_Del	DEL	GCGCAAGTAGCA	GCGCAAGTAGCA	-			P-0003493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	124	212	0	ENST00000250448.2:c.772_783del	p.Cys258_Arg261del	p.C258_R261del	ENST00000250448	NM_004496.3	258	TGCTACTTGCGC/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	280	269	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0003514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	389	225	1	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158452	26158452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	226	215	0	ENST00000289316.2:c.55G>T	p.Val19Leu	p.V19L	ENST00000289316	NM_138720.2	19	Gtg/Ttg																																																																														
CHEK1	0	MSKCC	GRCh37	11	125514436	125514436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	63	246	0	ENST00000428830.2:c.1131G>A	p.Met377Ile	p.M377I	ENST00000428830	NM_001114121.2	377	atG/atA																																																																														
TP53	0	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	316	299	1	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554354	63554354	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	536	298	0	ENST00000307078.5:c.385C>T	p.Arg129Ter	p.R129*	ENST00000307078	NM_004655.3	129	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057788	27057788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	66	505	0	ENST00000324856.7:c.1496C>T	p.Ser499Leu	p.S499L	ENST00000324856	NM_006015.4	499	tCg/tTg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932136	36932136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	171	504	1	ENST00000361632.4:c.2333C>T	p.Ala778Val	p.A778V	ENST00000361632		778	gCg/gTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248444	212248444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	145	336	0	ENST00000342788.4:c.3823C>T	p.Arg1275Trp	p.R1275W	ENST00000342788	NM_005235.2	1275	Cgg/Tgg																																																																														
SETD2	0	MSKCC	GRCh37	3	47164921	47164921	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182736967		P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	94	316	0	ENST00000409792.3:c.1205G>A	p.Arg402Gln	p.R402Q	ENST00000409792	NM_014159.6	402	cGg/cAg																																																																														
BCL6	0	MSKCC	GRCh37	3	187447754	187447754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	96	201	0	ENST00000232014.4:c.439C>T	p.Arg147Trp	p.R147W	ENST00000232014	NM_001130845.1	147	Cgg/Tgg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	82	158	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806108	1806108	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	171	343	0	ENST00000260795.2:c.1127T>C	p.Ile376Thr	p.I376T	ENST00000260795		376	aTc/aCc																																																																														
TET2	0	MSKCC	GRCh37	4	106155851	106155851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	46	341	0	ENST00000380013.4:c.752C>T	p.Ala251Val	p.A251V	ENST00000380013	NM_001127208.2	251	gCc/gTc																																																																														
NSD1	0	MSKCC	GRCh37	5	176665274	176665274	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	114	290	0	ENST00000439151.2:c.3958C>T	p.Arg1320Ter	p.R1320*	ENST00000439151	NM_022455.4	1320	Cga/Tga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100323	157100323	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	136	200	0	ENST00000346085.5:c.1260T>A	p.Asn420Lys	p.N420K	ENST00000346085	NM_020732.3	420	aaT/aaA																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509421	106509421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	107	381	1	ENST00000359195.3:c.1415G>A	p.Arg472His	p.R472H	ENST00000359195	NM_002649.2	472	cGt/cAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	62	84	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	62	84	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TSC1	0	MSKCC	GRCh37	9	135779129	135779129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	71	342	0	ENST00000298552.3:c.2117G>A	p.Arg706His	p.R706H	ENST00000298552	NM_001162426.1	706	cGt/cAt																																																																														
ARID5B	0	MSKCC	GRCh37	10	63760023	63760023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	140	265	0	ENST00000279873.7:c.676C>T	p.Arg226Trp	p.R226W	ENST00000279873	NM_032199.2	226	Cgg/Tgg																																																																														
ATM	0	MSKCC	GRCh37	11	108205807	108205807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	64	245	0	ENST00000278616.4:c.8122G>A	p.Asp2708Asn	p.D2708N	ENST00000278616	NM_000051.3	2708	Gat/Aat																																																																														
ATM	0	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	132	364	1	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																														
MLL	0	MSKCC	GRCh37	11	118352585	118352585	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	166	422	1	ENST00000534358.1:c.3790C>T	p.Arg1264Ter	p.R1264*	ENST00000534358	NM_005933.3	1264	Cga/Tga																																																																														
MLL2	0	MSKCC	GRCh37	12	49418670	49418670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	186	315	0	ENST00000301067.7:c.15844C>T	p.Arg5282Ter	p.R5282*	ENST00000301067	NM_003482.3	5282	Cga/Tga																																																																														
POLE	0	MSKCC	GRCh37	12	133254192	133254192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	174	412	2	ENST00000320574.5:c.692G>A	p.Arg231His	p.R231H	ENST00000320574	NM_006231.2	231	cGc/cAc																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134823	41134823	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	218	594	0	ENST00000379561.5:c.805C>T	p.Arg269Ter	p.R269*	ENST00000379561	NM_002015.3	269	Cga/Tga																																																																														
PDPK1	0	MSKCC	GRCh37	16	2647754	2647754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	115	243	0	ENST00000342085.4:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000342085	NM_002613.4	553	Gcc/Acc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15967400	15967400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	195	335	1	ENST00000268712.3:c.5203G>A	p.Asp1735Asn	p.D1735N	ENST00000268712	NM_006311.3	1735	Gac/Aac																																																																														
NCOR1	0	MSKCC	GRCh37	17	15974781	15974781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	99	456	0	ENST00000268712.3:c.4094G>A	p.Arg1365Gln	p.R1365Q	ENST00000268712	NM_006311.3	1365	cGg/cAg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554008	63554008	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199798353		P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	174	382	2	ENST00000307078.5:c.731C>T	p.Ser244Leu	p.S244L	ENST00000307078	NM_004655.3	244	tCg/tTg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2211167	2211167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	195	302	0	ENST00000398665.3:c.1421C>T	p.Pro474Leu	p.P474L	ENST00000398665	NM_032482.2	474	cCg/cTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11143985	11143985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	166	239	0	ENST00000344626.4:c.3566G>A	p.Arg1189Gln	p.R1189Q	ENST00000344626	NM_003072.3	1189	cGa/cAa																																																																														
AXL	0	MSKCC	GRCh37	19	41743883	41743883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	182	391	0	ENST00000301178.4:c.818C>T	p.Ala273Val	p.A273V	ENST00000301178	NM_021913.4	273	gCg/gTg																																																																														
POLD1	0	MSKCC	GRCh37	19	50921170	50921170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	130	459	0	ENST00000440232.2:c.3290G>A	p.Arg1097Gln	p.R1097Q	ENST00000440232	NM_002691.3	1097	cGg/cAg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40770588	40770588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	111	274	1	ENST00000373198.4:c.2794C>T	p.Arg932Cys	p.R932C	ENST00000373198	NM_133170.3	932	Cgc/Tgc																																																																														
ARAF	0	MSKCC	GRCh37	X	47424204	47424204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199527940		P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	42	173	0	ENST00000377045.4:c.209C>T	p.Thr70Met	p.T70M	ENST00000377045	NM_001654.4	70	aCg/aTg																																																																														
ATRX	0	MSKCC	GRCh37	X	76940012	76940012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	132	226	0	ENST00000373344.5:c.736C>T	p.Arg246Cys	p.R246C	ENST00000373344	NM_000489.3	246	Cgc/Tgc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	145	404	3	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	151	313	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	98	333	1	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	112	309	2	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	160	384	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	55	113	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	54	150	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TSC1	0	MSKCC	GRCh37	9	135781157	135781157	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	48	618	1	ENST00000298552.3:c.1808delC	p.Pro603ArgfsTer26	p.P603Rfs*26	ENST00000298552	NM_001162426.1	603	cCg/cg																																																																														
MLL2	0	MSKCC	GRCh37	12	49423190	49423196	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTCAG	TCCTCAG	-			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	141	303	0	ENST00000301067.7:c.14063_14069del	p.Thr4688MetfsTer107	p.T4688Mfs*107	ENST00000301067	NM_003482.3	4688	aCTGAGGAt/at																																																																														
TSC1	0	MSKCC	GRCh37	9	135772951	135772951	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	27	318	3	ENST00000298552.3:c.2672del	p.Asn891ThrfsTer40	p.N891Tfs*40	ENST00000298552	NM_001162426.1	891	aAc/ac																																																																														
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0003524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	183	387	1	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	83	369	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	81	470	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713864	30713864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	30	266	0	ENST00000359013.4:c.1264G>T	p.Asp422Tyr	p.D422Y	ENST00000359013	NM_001024847.2	422	Gac/Tac																																																																														
EED	0	MSKCC	GRCh37	11	85956357	85956357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	28	188	1	ENST00000263360.6:c.86G>A	p.Ser29Asn	p.S29N	ENST00000263360	NM_003797.3	29	aGc/aAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	112	317	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
STK11	0	MSKCC	GRCh37	19	1220574	1220607	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCACAGGCACTGCACCCGTTCGCGGCGGACGACA	CCACAGGCACTGCACCCGTTCGCGGCGGACGACA	-			P-0003547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	76	334	0	ENST00000326873.7:c.598-4_627delACAGGCACTGCACCCGTTCGCGGCGGACGACACC		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																															
SMAD4	0	MSKCC	GRCh37	18	48573507	48573518	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAGTGAAACA	GAGAGTGAAACA	TT			P-0003547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	86	323	0	ENST00000342988.3:c.91_102delGAGAGTGAAACAinsTT	p.Glu31PhefsTer11	p.E31Ffs*11	ENST00000342988	NM_005359.5	31	GAGAGTGAAACA/TT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	337	340	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP63	0	MSKCC	GRCh37	3	189582168	189582168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	189	319	0	ENST00000264731.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000264731	NM_003722.4	243	Cgg/Tgg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914305	32914305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	376	849	2	ENST00000380152.3:c.5813G>T	p.Gly1938Val	p.G1938V	ENST00000380152		1938	gGa/gTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578401	7578402	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GG	GG	T			P-0003594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	40	218	0	ENST00000269305.4:c.528_529delinsA	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgCCcc/tgAcc																																																																														
KIT	0	MSKCC	GRCh37	4	55593667	55593669	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0003621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	24	218	0	ENST00000288135.5:c.1735_1737del	p.Asp579del	p.D579del	ENST00000288135	NM_000222.2	578	tATGat/tat																																																																														
AKT3	0	MSKCC	GRCh37	1	243858931	243858931	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	50	321	0	ENST00000263826.5:c.134T>G	p.Val45Gly	p.V45G	ENST00000263826	NM_005465.4	45	gTg/gGg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0003621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	44	239	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003635-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	54	628	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0003635-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			532	487	565	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003635-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			117	311	285	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7574002	7574002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003635-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			288	1016	829	0	ENST00000269305.4:c.1025G>C	p.Arg342Pro	p.R342P	ENST00000269305	NM_001126112.2	342	cGa/cCa																																																																														
RB1	0	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0003635-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			104	249	289	0	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																															
IKZF1	0	MSKCC	GRCh37	7	50468297	50468297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003635-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			543	42	337	0	ENST00000331340.3:c.1532G>A	p.Arg511Gln	p.R511Q	ENST00000331340	NM_006060.4	511	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	58	127	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0003638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	97	313	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
SETD2	0	MSKCC	GRCh37	3	47164792	47164792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	33	139	0	ENST00000409792.3:c.1334G>A	p.Arg445His	p.R445H	ENST00000409792	NM_014159.6	445	cGc/cAc																																																																														
MLL2	0	MSKCC	GRCh37	12	49424062	49424062	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0003638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	79	353	0	ENST00000301067.7:c.13999+1G>A		p.X4667_splice	ENST00000301067	NM_003482.3	4667																																																																															
TSHR	0	MSKCC	GRCh37	14	81422032	81422032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	29	119	0	ENST00000298171.2:c.8C>T	p.Pro3Leu	p.P3L	ENST00000298171	NM_000369.2	3	cCg/cTg																																																																														
AR	0	MSKCC	GRCh37	X	66766567	66766567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	47	361	0	ENST00000374690.3:c.1579T>C	p.Trp527Arg	p.W527R	ENST00000374690	NM_000044.3	527	Tgg/Cgg																																																																														
SETD2	0	MSKCC	GRCh37	3	47061249	47061249	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0003645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	28	571	0	ENST00000409792.3:c.7431+1G>C		p.X2477_splice	ENST00000409792	NM_014159.6	2477																																																																															
IGF1R	0	MSKCC	GRCh37	15	99459198	99459198	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	63	547	0	ENST00000268035.6:c.1834T>C	p.Ser612Pro	p.S612P	ENST00000268035	NM_000875.3	612	Tcc/Ccc																																																																														
VHL	0	MSKCC	GRCh37	3	10191562	10191563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	50	442	0	ENST00000256474.2:c.556dup	p.Glu186GlyfsTer70	p.E186Gfs*70	ENST00000256474	NM_000551.3	185	-/G																																																																														
PBRM1	0	MSKCC	GRCh37	3	52595804	52595805	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0003645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	39	496	0	ENST00000394830.3:c.4110_4111del	p.Ala1371GlnfsTer6	p.A1371Qfs*6	ENST00000394830	NM_018313.4	1370	acAGcc/accc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240024	53240034	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CACTGGTAGCA	CACTGGTAGCA	-			P-0003645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	16	286	0	ENST00000375401.3:c.1407_1417del	p.Tyr469Ter	p.Y469*	ENST00000375401	NM_004187.3	469	taTGCTACCAGTGgt/tagt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713754	30713754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	41	155	0	ENST00000359013.4:c.1154A>C	p.His385Pro	p.H385P	ENST00000359013	NM_001024847.2	385	cAc/cCc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713546	30713546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	219	183	0	ENST00000359013.4:c.946A>G	p.Lys316Glu	p.K316E	ENST00000359013	NM_001024847.2	316	Aag/Gag																																																																														
RB1	0	MSKCC	GRCh37	13	48922000	48922000	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0003668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	181	196	0	ENST00000267163.4:c.539+1G>A		p.X180_splice	ENST00000267163	NM_000321.2	180																																																																															
IGF1R	0	MSKCC	GRCh37	15	99482526	99482526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	46	216	0	ENST00000268035.6:c.3394G>A	p.Val1132Ile	p.V1132I	ENST00000268035	NM_000875.3	1132	Gtc/Atc																																																																														
ATRX	0	MSKCC	GRCh37	X	76855262	76855262	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	946	164	0	ENST00000373344.5:c.5725G>T	p.Glu1909Ter	p.E1909*	ENST00000373344	NM_000489.3	1909	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7577093	7577094	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0003668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	797	244	0	ENST00000269305.4:c.844_845del	p.Arg282AlafsTer23	p.R282Afs*23	ENST00000269305	NM_001126112.2	282	CGg/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	19	146	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MDM4	0	MSKCC	GRCh37	1	204518437	204518437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201947927		P-0003671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	38	366	0	ENST00000367182.3:c.1100C>T	p.Ser367Leu	p.S367L	ENST00000367182	NM_001278516.1	367	tCg/tTg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52685760	52685760	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0003671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	88	417	0	ENST00000394830.3:c.712C>T	p.Gln238Ter	p.Q238*	ENST00000394830	NM_018313.4	238	Cag/Tag																																																																														
GATA3	0	MSKCC	GRCh37	10	8097656	8097656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	37	206	0	ENST00000346208.3:c.38A>G	p.His13Arg	p.H13R	ENST00000346208		13	cAc/cGc																																																																														
VHL	0	MSKCC	GRCh37	3	10188251	10188252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	136	359	0	ENST00000256474.2:c.397dup	p.Thr133AsnfsTer2	p.T133Nfs*2	ENST00000256474	NM_000551.3	132	caa/cAaa																																																																														
SETD2	0	MSKCC	GRCh37	3	47098964	47098964	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	90	202	0	ENST00000409792.3:c.6310del	p.Ser2104LeufsTer43	p.S2104Lfs*43	ENST00000409792	NM_014159.6	2104	Tct/ct																																																																														
TET2	0	MSKCC	GRCh37	4	106155358	106155358	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	28	329	0	ENST00000380013.4:c.260del	p.Lys87SerfsTer8	p.K87Sfs*8	ENST00000380013	NM_001127208.2	87	Aag/ag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52637700	52637700	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	35	342	0	ENST00000394830.3:c.2616delT	p.Phe872LeufsTer43	p.F872Lfs*43	ENST00000394830	NM_018313.4	872	ttT/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	147	464	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RAD50	0	MSKCC	GRCh37	5	131915013	131915013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	86	282	0	ENST00000265335.6:c.370G>T	p.Gly124Cys	p.G124C	ENST00000265335		124	Ggt/Tgt																																																																														
MLL3	0	MSKCC	GRCh37	7	151945131	151945131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	18	78	0	ENST00000262189.6:c.2388G>T	p.Met796Ile	p.M796I	ENST00000262189	NM_170606.2	796	atG/atT																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986988	36986988	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	79	363	0	ENST00000354822.5:c.701A>T	p.Gln234Leu	p.Q234L	ENST00000354822	NM_001079668.2	234	cAg/cTg																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987055	36987055	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	85	291	0	ENST00000354822.5:c.634C>T	p.Gln212Ter	p.Q212*	ENST00000354822	NM_001079668.2	212	Caa/Taa																																																																														
RBM10	0	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	43	272	0	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272169	15272170	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	31	109	0	ENST00000263388.2:c.6269dup	p.Leu2092ProfsTer3	p.L2092Pfs*3	ENST00000263388	NM_000435.2	2090	ggc/ggGc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9787016	9787016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	193	343	0	ENST00000377346.4:c.3047G>C	p.Arg1016Pro	p.R1016P	ENST00000377346	NM_005026.3	1016	cGa/cCa																																																																														
VTCN1	0	MSKCC	GRCh37	1	117695881	117695881	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	177	319	0	ENST00000369458.3:c.556G>C	p.Asp186His	p.D186H	ENST00000369458	NM_024626.3	186	Gac/Cac																																																																														
VTCN1	0	MSKCC	GRCh37	1	117712771	117712771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	242	446	0	ENST00000369458.3:c.55C>G	p.Leu19Val	p.L19V	ENST00000369458	NM_024626.3	19	Ctg/Gtg																																																																														
MYD88	0	MSKCC	GRCh37	3	38182032	38182032	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	178	274	0	ENST00000396334.3:c.656C>G	p.Ser219Cys	p.S219C	ENST00000396334	NM_002468.4	219	tCt/tGt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52610570	52610570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	243	404	1	ENST00000394830.3:c.3603G>A	p.Met1201Ile	p.M1201I	ENST00000394830	NM_018313.4	1201	atG/atA																																																																														
EPHA3	0	MSKCC	GRCh37	3	89462359	89462359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	192	316	0	ENST00000336596.2:c.1831G>A	p.Glu611Lys	p.E611K	ENST00000336596	NM_005233.5	611	Gag/Aag																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670645	134670645	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	252	438	0	ENST00000398015.3:c.556C>G	p.Leu186Val	p.L186V	ENST00000398015	NM_004441.4	186	Ctt/Gtt																																																																														
ATR	0	MSKCC	GRCh37	3	142272702	142272702	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	302	551	0	ENST00000350721.4:c.2497G>C	p.Glu833Gln	p.E833Q	ENST00000350721	NM_001184.3	833	Gaa/Caa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178947199	178947199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	154	247	0	ENST00000263967.3:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000263967	NM_006218.2	879	Cag/Tag																																																																														
SOX2	0	MSKCC	GRCh37	3	181430873	181430873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	262	524	0	ENST00000325404.1:c.725C>T	p.Ser242Leu	p.S242L	ENST00000325404	NM_003106.3	242	tCg/tTg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191541	185191541	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	84	163	0	ENST00000265026.3:c.2422C>G	p.Leu808Val	p.L808V	ENST00000265026	NM_004721.4	808	Ctg/Gtg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249465	153249465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	263	317	0	ENST00000281708.4:c.1313C>A	p.Ser438Tyr	p.S438Y	ENST00000281708	NM_033632.3	438	tCt/tAt																																																																														
RAD50	0	MSKCC	GRCh37	5	131973818	131973818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	189	278	1	ENST00000265335.6:c.3521C>T	p.Ser1174Leu	p.S1174L	ENST00000265335		1174	tCa/tTa																																																																														
FLT4	0	MSKCC	GRCh37	5	180041149	180041149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	210	292	0	ENST00000261937.6:c.3250G>A	p.Glu1084Lys	p.E1084K	ENST00000261937	NM_182925.4	1084	Gaa/Aaa																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158610	26158610	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	89	155	0	ENST00000289316.2:c.213C>G	p.Phe71Leu	p.F71L	ENST00000289316	NM_138720.2	71	ttC/ttG																																																																														
DAXX	0	MSKCC	GRCh37	6	33288711	33288711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	136	269	0	ENST00000374542.5:c.841G>C	p.Asp281His	p.D281H	ENST00000374542	NM_001141970.1	281	Gat/Cat																																																																														
ROS1	0	MSKCC	GRCh37	6	117647553	117647553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	349	590	0	ENST00000368508.3:c.5391G>C	p.Gln1797His	p.Q1797H	ENST00000368508	NM_002944.2	1797	caG/caC																																																																														
EZH2	0	MSKCC	GRCh37	7	148512009	148512009	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	183	259	0	ENST00000320356.2:c.1669G>C	p.Glu557Gln	p.E557Q	ENST00000320356	NM_004456.4	557	Gag/Cag																																																																														
MLL3	0	MSKCC	GRCh37	7	152008892	152008892	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	212	377	0	ENST00000262189.6:c.730G>C	p.Asp244His	p.D244H	ENST00000262189	NM_170606.2	244	Gat/Cat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341929	8341929	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	207	340	0	ENST00000356435.5:c.4711G>C	p.Glu1571Gln	p.E1571Q	ENST00000356435		1571	Gaa/Caa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87339223	87339223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	191	345	0	ENST00000277120.3:c.805G>A	p.Glu269Lys	p.E269K	ENST00000277120		269	Gaa/Aaa																																																																														
PTCH1	0	MSKCC	GRCh37	9	98229601	98229601	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	191	342	0	ENST00000331920.6:c.2357G>C	p.Arg786Thr	p.R786T	ENST00000331920	NM_000264.3	786	aGa/aCa																																																																														
TET1	0	MSKCC	GRCh37	10	70405251	70405251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	164	276	0	ENST00000373644.4:c.2765G>C	p.Arg922Thr	p.R922T	ENST00000373644	NM_030625.2	922	aGa/aCa																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88678997	88678997	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	66	90	0	ENST00000372037.3:c.937G>T	p.Glu313Ter	p.E313*	ENST00000372037	NM_004329.2	313	Gaa/Taa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18491408	18491408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	223	328	0	ENST00000266497.5:c.1321C>G	p.Leu441Val	p.L441V	ENST00000266497		441	Cta/Gta																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18499579	18499579	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	211	414	1	ENST00000266497.5:c.1434G>C	p.Leu478Phe	p.L478F	ENST00000266497		478	ttG/ttC																																																																														
ARID2	0	MSKCC	GRCh37	12	46287292	46287292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	168	308	0	ENST00000334344.6:c.5237G>C	p.Arg1746Thr	p.R1746T	ENST00000334344	NM_152641.2	1746	aGa/aCa																																																																														
MLL2	0	MSKCC	GRCh37	12	49425315	49425315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	259	390	0	ENST00000301067.7:c.13173G>C	p.Gln4391His	p.Q4391H	ENST00000301067	NM_003482.3	4391	caG/caC																																																																														
MLL2	0	MSKCC	GRCh37	12	49445170	49445170	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	85	156	0	ENST00000301067.7:c.2296G>T	p.Glu766Ter	p.E766*	ENST00000301067	NM_003482.3	766	Gag/Tag																																																																														
POLE	0	MSKCC	GRCh37	12	133236047	133236047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	42	332	0	ENST00000320574.5:c.3109C>T	p.Arg1037Cys	p.R1037C	ENST00000320574	NM_006231.2	1037	Cgt/Tgt																																																																														
POLE	0	MSKCC	GRCh37	12	133254277	133254277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	259	371	0	ENST00000320574.5:c.607G>A	p.Asp203Asn	p.D203N	ENST00000320574	NM_006231.2	203	Gat/Aat																																																																														
FLT1	0	MSKCC	GRCh37	13	28964063	28964063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	220	440	1	ENST00000282397.4:c.1839G>T	p.Lys613Asn	p.K613N	ENST00000282397	NM_002019.4	613	aaG/aaT																																																																														
BRCA2	0	MSKCC	GRCh37	13	32931966	32931966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	245	436	0	ENST00000380152.3:c.7705G>A	p.Gly2569Ser	p.G2569S	ENST00000380152		2569	Ggt/Agt																																																																														
IRS2	0	MSKCC	GRCh37	13	110437548	110437548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	170	283	0	ENST00000375856.3:c.853G>A	p.Glu285Lys	p.E285K	ENST00000375856	NM_003749.2	285	Gag/Aag																																																																														
AKT1	0	MSKCC	GRCh37	14	105239245	105239245	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	106	282	0	ENST00000349310.3:c.1142C>G	p.Ser381Ter	p.S381*	ENST00000349310	NM_001014432.1	381	tCa/tGa																																																																														
TSC2	0	MSKCC	GRCh37	16	2130267	2130267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	232	467	0	ENST00000219476.3:c.3499G>A	p.Glu1167Lys	p.E1167K	ENST00000219476	NM_000548.3	1167	Gag/Aag																																																																														
CD79B	0	MSKCC	GRCh37	17	62007556	62007556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	502	439	0	ENST00000392795.3:c.311C>T	p.Ser104Phe	p.S104F	ENST00000392795	NM_001039933.1	104	tCt/tTt																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39637900	39637900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	201	353	0	ENST00000262039.4:c.2317C>G	p.Leu773Val	p.L773V	ENST00000262039	NM_002647.2	773	Ctt/Gtt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5274225	5274225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	242	411	0	ENST00000357368.4:c.222C>A	p.Asn74Lys	p.N74K	ENST00000357368	NM_002850.3	74	aaC/aaA																																																																														
INSR	0	MSKCC	GRCh37	19	7119467	7119467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	257	498	2	ENST00000302850.5:c.3787G>C	p.Glu1263Gln	p.E1263Q	ENST00000302850	NM_000208.2	1263	Gag/Cag																																																																														
INSR	0	MSKCC	GRCh37	19	7126655	7126655	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	113	234	0	ENST00000302850.5:c.2953G>C	p.Asp985His	p.D985H	ENST00000302850	NM_000208.2	985	Gat/Cat																																																																														
PAK7	0	MSKCC	GRCh37	20	9546988	9546988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	49	148	0	ENST00000353224.5:c.1034C>T	p.Ser345Leu	p.S345L	ENST00000353224	NM_177990.2	345	tCa/tTa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022238	31022238	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1423	221	404	0	ENST00000375687.4:c.1723C>T	p.Gln575Ter	p.Q575*	ENST00000375687	NM_015338.5	575	Caa/Taa																																																																														
TOP1	0	MSKCC	GRCh37	20	39741485	39741485	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	189	286	0	ENST00000361337.2:c.1372C>G	p.Arg458Gly	p.R458G	ENST00000361337	NM_003286.2	458	Cgg/Ggg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259331	36259331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	136	193	0	ENST00000300305.3:c.160G>A	p.Glu54Lys	p.E54K	ENST00000300305		54	Gag/Aag																																																																														
ERG	0	MSKCC	GRCh37	21	39755594	39755594	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	28	306	0	ENST00000288319.7:c.1171G>C	p.Asp391His	p.D391H	ENST00000288319	NM_182918.3	391	Gac/Cac																																																																														
CHEK2	11200	MSKCC	GRCh37	22	29099515	29099515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	281	450	0	ENST00000328354.6:c.886G>A	p.Asp296Asn	p.D296N	ENST00000328354	NM_007194.3	296	Gat/Aat																																																																														
EP300	0	MSKCC	GRCh37	22	41513400	41513400	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	299	435	0	ENST00000263253.7:c.304C>T	p.Gln102Ter	p.Q102*	ENST00000263253	NM_001429.3	102	Caa/Taa																																																																														
MDC1	0	MSKCC	GRCh37	6	30680258	30680259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	247	491	0	ENST00000376406.3:c.1460dup	p.Asp488GlyfsTer9	p.D488Gfs*9	ENST00000376406	NM_014641.2	487	aag/aaAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0003736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	23	312	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
NCOR1	0	MSKCC	GRCh37	17	16001745	16001745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	46	583	0	ENST00000268712.3:c.2756C>T	p.Pro919Leu	p.P919L	ENST00000268712	NM_006311.3	919	cCg/cTg																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121070	29121070	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	51	586	0	ENST00000328354.6:c.487C>G	p.His163Asp	p.H163D	ENST00000328354	NM_007194.3	163	Cac/Gac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	271	283	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	204	271	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266107	41266107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	339	313	2	ENST00000349496.5:c.104T>G	p.Ile35Ser	p.I35S	ENST00000349496	NM_001904.3	35	aTc/aGc																																																																														
SPEN	0	MSKCC	GRCh37	1	16258647	16258647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	183	237	0	ENST00000375759.3:c.5912C>T	p.Pro1971Leu	p.P1971L	ENST00000375759	NM_015001.2	1971	cCt/cTt																																																																														
JAK1	0	MSKCC	GRCh37	1	65344760	65344760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	290	303	0	ENST00000342505.4:c.277C>T	p.Arg93Cys	p.R93C	ENST00000342505	NM_002227.2	93	Cgc/Tgc																																																																														
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0003742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	67	69	0				ENST00000310581	NM_198253.2																																																																																
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	91	322	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175225	112175225	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	53	251	0	ENST00000257430.4:c.3935del	p.Gly1312GlufsTer9	p.G1312Efs*9	ENST00000257430	NM_000038.5	1312	Gga/ga																																																																														
MLL3	0	MSKCC	GRCh37	7	152012268	152012269	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0003759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	51	331	0	ENST00000262189.6:c.544_545delinsTG	p.Glu182Trp	p.E182W	ENST00000262189	NM_170606.2	182	GAg/TGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0003779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	52	259	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
IGF1	0	MSKCC	GRCh37	12	102811734	102811734	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	240	414	0	ENST00000307046.8:c.450A>C	p.Lys150Asn	p.K150N	ENST00000307046	NM_001111285.1	150	aaA/aaC																																																																														
GATA3	0	MSKCC	GRCh37	10	8111543	8111545	+	inframe_deletion	In_Frame_Del	DEL	CTA	CTA	-			P-0003779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	57	259	0	ENST00000346208.3:c.1033_1035del	p.Tyr345del	p.Y345del	ENST00000346208		343	ctCTAc/ctc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	26	110	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	72	260	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
GSK3B	0	MSKCC	GRCh37	3	119582380	119582380	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	52	164	0	ENST00000316626.5:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000316626		341	Cga/Tga																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120466578	120466578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	66	296	0	ENST00000256646.2:c.4541A>G	p.Lys1514Arg	p.K1514R	ENST00000256646	NM_024408.3	1514	aAa/aGa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217294	66217294	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	50	170	0	ENST00000273854.3:c.2321T>A	p.Val774Glu	p.V774E	ENST00000273854	NM_004439.5	774	gTg/gAg																																																																														
FAT1	0	MSKCC	GRCh37	4	187524456	187524456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	48	209	0	ENST00000441802.2:c.11224G>C	p.Asp3742His	p.D3742H	ENST00000441802	NM_005245.3	3742	Gac/Cac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789600	3789600	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	70	272	0	ENST00000262367.5:c.4259A>C	p.Asp1420Ala	p.D1420A	ENST00000262367	NM_004380.2	1420	gAt/gCt																																																																														
BCOR	0	MSKCC	GRCh37	X	39932412	39932412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	323	366	1	ENST00000378444.4:c.2187G>T	p.Leu729Phe	p.L729F	ENST00000378444	NM_001123385.1	729	ttG/ttT																																																																														
ARAF	0	MSKCC	GRCh37	X	47424454	47424454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	351	385	0	ENST00000377045.4:c.374G>C	p.Cys125Ser	p.C125S	ENST00000377045	NM_001654.4	125	tGc/tCc																																																																														
NF1	0	MSKCC	GRCh37	17	29541485	29541485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	32	85	0	ENST00000358273.4:c.1413delA	p.Val472Ter	p.V472*	ENST00000358273	NM_001042492.2	470	gAa/ga																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	63	300	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	164	404	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																														
SPEN	0	MSKCC	GRCh37	1	16256327	16256327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	80	290	0	ENST00000375759.3:c.3592G>A	p.Asp1198Asn	p.D1198N	ENST00000375759	NM_015001.2	1198	Gat/Aat																																																																														
CCND2	0	MSKCC	GRCh37	12	4398153	4398153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	56	179	0	ENST00000261254.3:c.717C>A	p.Asp239Glu	p.D239E	ENST00000261254	NM_001759.3	239	gaC/gaA																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0003807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	18	251	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	36	386	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101907164	101907164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	29	221	0	ENST00000374994.4:c.1124C>T	p.Thr375Ile	p.T375I	ENST00000374994	NM_004612.2	375	aCa/aTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	18	197	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
HRAS	0	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	75	327	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	38	166	0	ENST00000375023.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000375023	NM_004557.3	1836	Gag/Aag																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266713	198266713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776846119		P-0003817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	42	320	0	ENST00000335508.6:c.2219G>A	p.Gly740Glu	p.G740E	ENST00000335508	NM_012433.2	740	gGa/gAa																																																																														
GNAS	0	MSKCC	GRCh37	20	57485442	57485442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	33	265	0	ENST00000371085.3:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000371085	NM_000516.4	342	Cga/Tga																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969327	44969327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	44	172	0	ENST00000377967.4:c.4009G>A	p.Glu1337Lys	p.E1337K	ENST00000377967	NM_021140.2	1337	Gag/Aag																																																																														
STAG2	0	MSKCC	GRCh37	X	123197842	123197842	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	60	242	0	ENST00000218089.9:c.1966C>T	p.Gln656Ter	p.Q656*	ENST00000218089	NM_001042749.1	656	Caa/Taa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212578287	212578287	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	160	499	0	ENST00000342788.4:c.970A>C	p.Lys324Gln	p.K324Q	ENST00000342788	NM_005235.2	324	Aaa/Caa																																																																														
RAD51C	0	MSKCC	GRCh37	17	56770006	56770006	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0003843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	70	213	0	ENST00000337432.4:c.2T>C	p.Met1?	p.M1?	ENST00000337432	NM_058216.2	1	aTg/aCg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240632	53240724	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCCTAAGCTCACACAGCTGACACGTAACCATGAATCATCCACTCACCTCCTCTTCGGGGGTTAGGTGCCGTTTACTGTCACTGACAGGGAAA	TGCCTAAGCTCACACAGCTGACACGTAACCATGAATCATCCACTCACCTCCTCTTCGGGGGTTAGGTGCCGTTTACTGTCACTGACAGGGAAA	-			P-0003843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	103	196	0	ENST00000375401.3:c.1356_1401+47del		p.X452_splice	ENST00000375401	NM_004187.3	452																																																																															
VHL	0	MSKCC	GRCh37	3	10191470	10191470	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0003843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	85	217	0	ENST00000256474.2:c.464-1del		p.X155_splice	ENST00000256474	NM_000551.3	155																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67591118	67591132	+	inframe_deletion	In_Frame_Del	DEL	ATCCAGCTGAGAAAG	ATCCAGCTGAGAAAG	-			P-0003843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	47	183	0	ENST00000274335.5:c.1712_1726del	p.Ile571_Lys575del	p.I571_K575del	ENST00000274335		571	ATCCAGCTGAGAAAG/-																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911088	29911099	+	inframe_deletion	In_Frame_Del	DEL	GGACGGGCGCTT	GGACGGGCGCTT	-			P-0003843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	24	254	0	ENST00000376809.5:c.387_398del	p.Asp130_Phe133del	p.D130_F133del	ENST00000376809	NM_002116.7	129	tcGGACGGGCGCTTc/tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	586	334	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	50	224	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074392	8074392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	601	681	0	ENST00000377482.5:c.267G>C	p.Lys89Asn	p.K89N	ENST00000377482	NM_018948.3	89	aaG/aaC																																																																														
CALR	0	MSKCC	GRCh37	19	13054680	13054680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1409	237	576	0	ENST00000316448.5:c.1207G>A	p.Glu403Lys	p.E403K	ENST00000316448	NM_004343.3	403	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0003886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	139	304	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
KDR	0	MSKCC	GRCh37	4	55979551	55979551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	186	491	0	ENST00000263923.4:c.896G>A	p.Arg299Gln	p.R299Q	ENST00000263923	NM_002253.2	299	cGg/cAg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119050	70119050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	249	250	0	ENST00000245479.2:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000245479	NM_000346.3	208	Cag/Tag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936393		P-0003886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	116	222	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579361	7579361	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	182	312	0	ENST00000269305.4:c.326del	p.Phe109SerfsTer14	p.F109Sfs*14	ENST00000269305	NM_001126112.2	109	tTc/tc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213912	66213912	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	148	300	0	ENST00000273854.3:c.2518del	p.Ile840PhefsTer11	p.I840Ffs*11	ENST00000273854	NM_004439.5	840	Att/tt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	153	331	0	ENST00000342988.3:c.1610A>T	p.Asp537Val	p.D537V	ENST00000342988	NM_005359.5	537	gAc/gTc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0003892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	144	347	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
BCOR	0	MSKCC	GRCh37	X	39922276	39922276	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	99	334	0	ENST00000378444.4:c.3896C>A	p.Thr1299Asn	p.T1299N	ENST00000378444	NM_001123385.1	1299	aCc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	116	311	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	118	292	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	56	207	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0003901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	159	232	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
AMER1	0	MSKCC	GRCh37	X	63411366	63411366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	204	379	0	ENST00000330258.3:c.1801C>T	p.Arg601Ter	p.R601*	ENST00000330258	NM_152424.3	601	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003914-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			972	530	653	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
RHOA	0	MSKCC	GRCh37	3	49413009	49413009	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552758		P-0003914-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1051	183	528	0	ENST00000418115.1:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000418115	NM_001664.2	5	cGg/cAg																																																																														
PMS2	0	MSKCC	GRCh37	7	6031648	6031648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116314131		P-0003914-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	175	336	0	ENST00000265849.7:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000265849	NM_000535.5	315	cGa/cAa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970969	21970969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003914-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			713	218	416	0	ENST00000304494.5:c.389T>A	p.Leu130Gln	p.L130Q	ENST00000304494	NM_000077.4	130	cTg/cAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970969	21970969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003914-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			713	218	416	0	ENST00000304494.5:c.389T>A	p.Leu130Gln	p.L130Q	ENST00000304494	NM_000077.4	130	cTg/cAg																																																																														
ATM	0	MSKCC	GRCh37	11	108196272	108196272	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0003914-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			673	105	358	0	ENST00000278616.4:c.6807+1G>A		p.X2269_splice	ENST00000278616	NM_000051.3	2269																																																																															
NF2	0	MSKCC	GRCh37	22	30070878	30070878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003914-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			796	117	499	0	ENST00000338641.4:c.1394A>G	p.Glu465Gly	p.E465G	ENST00000338641	NM_000268.3	465	gAg/gGg																																																																														
NF2	0	MSKCC	GRCh37	22	30070882	30070883	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0003914-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			809	117	515	0	ENST00000338641.4:c.1398_1399delAA	p.Arg467SerfsTer27	p.R467Sfs*27	ENST00000338641	NM_000268.3	466	cgAAga/cgga																																																																														
NF2	0	MSKCC	GRCh37	22	30070877	30070883	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCGAA	GAGCGAA	AGGCG			P-0003914-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			799	119	491	0	ENST00000338641.4:c.1393_1399delGAGCGAAinsAGGCG	p.Glu465ArgfsTer29	p.E465Rfs*29	ENST00000338641	NM_000268.3	465	GAGCGAAga/AGGCGga																																																																														
JAK3	0	MSKCC	GRCh37	19	17942137	17942137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	208	243	0	ENST00000458235.1:c.2878G>A	p.Glu960Lys	p.E960K	ENST00000458235	NM_000215.3	960	Gag/Aag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	439	469	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	367	296	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	42	237	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	238	190	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	393	303	0	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																														
RBM10	0	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	389	209	0	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																																																														
MYCN	0	MSKCC	GRCh37	2	16082254	16082254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	145	365	0	ENST00000281043.3:c.68C>T	p.Ser23Leu	p.S23L	ENST00000281043	NM_005378.4	23	tCg/tTg																																																																														
ALK	0	MSKCC	GRCh37	2	29451860	29451860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	289	374	0	ENST00000389048.3:c.2705G>A	p.Gly902Glu	p.G902E	ENST00000389048	NM_004304.4	902	gGa/gAa																																																																														
SHQ1	0	MSKCC	GRCh37	3	72799775	72799775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	250	281	0	ENST00000325599.8:c.1394C>T	p.Ser465Leu	p.S465L	ENST00000325599	NM_018130.2	465	tCa/tTa																																																																														
ATR	0	MSKCC	GRCh37	3	142238532	142238532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	190	203	0	ENST00000350721.4:c.4361T>A	p.Leu1454Gln	p.L1454Q	ENST00000350721	NM_001184.3	1454	cTa/cAa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244210	153244210	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	308	368	0	ENST00000281708.4:c.1947G>A	p.Trp649Ter	p.W649*	ENST00000281708	NM_033632.3	649	tgG/tgA																																																																														
FAT1	0	MSKCC	GRCh37	4	187628449	187628449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	264	285	0	ENST00000441802.2:c.2533G>A	p.Glu845Lys	p.E845K	ENST00000441802	NM_005245.3	845	Gaa/Aaa																																																																														
NBN	0	MSKCC	GRCh37	8	90982728	90982728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	248	263	0	ENST00000265433.3:c.760G>A	p.Glu254Lys	p.E254K	ENST00000265433	NM_002485.4	254	Gaa/Aaa																																																																														
ATM	0	MSKCC	GRCh37	11	108196860	108196860	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	212	202	0	ENST00000278616.4:c.6883G>T	p.Glu2295Ter	p.E2295*	ENST00000278616	NM_000051.3	2295	Gaa/Taa																																																																														
MLL	0	MSKCC	GRCh37	11	118390416	118390416	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	40	304	1	ENST00000534358.1:c.11230C>T	p.Arg3744Ter	p.R3744*	ENST00000534358	NM_005933.3	3744	Cga/Tga																																																																														
MGA	0	MSKCC	GRCh37	15	42021428	42021428	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	356	563	0	ENST00000219905.7:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000219905	NM_001164273.1	1242	Cga/Tga																																																																														
RNF43	0	MSKCC	GRCh37	17	56434978	56434978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	136	244	0	ENST00000407977.2:c.2159C>T	p.Ser720Leu	p.S720L	ENST00000407977		720	tCa/tTa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11129632	11129632	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	148	298	0	ENST00000344626.4:c.2439-1G>A		p.X813_splice	ENST00000344626	NM_003072.3	813																																																																															
CEBPA	0	MSKCC	GRCh37	19	33792453	33792453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	357	432	0	ENST00000498907.2:c.868G>A	p.Glu290Lys	p.E290K	ENST00000498907	NM_004364.3	290	Gag/Aag																																																																														
ERCC2	0	MSKCC	GRCh37	19	45872380	45872380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	169	263	0	ENST00000391945.4:c.131C>T	p.Ser44Leu	p.S44L	ENST00000391945	NM_000400.3	44	tCa/tTa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969452	44969452	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	353	209	0	ENST00000377967.4:c.4134del	p.Tyr1378Ter	p.Y1378*	ENST00000377967	NM_021140.2	1378	taC/ta																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974820	21974843	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	GCTCCATGCTGCTCCCCGCCGCCC	GCTCCATGCTGCTCCCCGCCGCCC	-			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	77	56	0	ENST00000304494.5:c.-17_7delGGGCGGCGGGGAGCAGCATGGAGC		p.*6*	ENST00000304494	NM_000077.4	6																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974820	21974843	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	GCTCCATGCTGCTCCCCGCCGCCC	GCTCCATGCTGCTCCCCGCCGCCC	-			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	77	56	0	ENST00000304494.5:c.-17_7delGGGCGGCGGGGAGCAGCATGGAGC		p.*6*	ENST00000304494	NM_000077.4	6																																																																															
GATA3	0	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0003920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	97	185	0	ENST00000346208.3:c.1275_1276dupAT	p.Ser426TyrfsTer50	p.S426Yfs*50	ENST00000346208		425	cca/ccATa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0003930-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1170	55	610	2	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
FLT1	0	MSKCC	GRCh37	13	29004202	29004202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137862999		P-0003930-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1414	278	555	1	ENST00000282397.4:c.1091C>T	p.Ser364Leu	p.S364L	ENST00000282397	NM_002019.4	364	tCg/tTg																																																																														
TSHR	0	MSKCC	GRCh37	14	81534611	81534611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003930-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1294	143	612	0	ENST00000298171.2:c.256G>A	p.Asp86Asn	p.D86N	ENST00000298171	NM_000369.2	86	Gat/Aat																																																																														
CBFB	0	MSKCC	GRCh37	16	67070628	67070628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003930-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1100	354	533	1	ENST00000412916.2:c.252G>C	p.Glu84Asp	p.E84D	ENST00000412916		84	gaG/gaC																																																																														
AR	0	MSKCC	GRCh37	X	66941780	66941780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003930-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	74	378	0	ENST00000374690.3:c.2424G>A	p.Met808Ile	p.M808I	ENST00000374690	NM_000044.3	808	atG/atA																																																																														
TP53	0	MSKCC	GRCh37	17	7578377	7578378	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0003930-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	100	406	0	ENST00000269305.4:c.552_553delTA	p.Asp184GlufsTer24	p.D184Efs*24	ENST00000269305	NM_001126112.2	184	gaTAgc/gagc																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	66	261	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	116	205	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	551	691	3	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga																																																																														
CBFB	0	MSKCC	GRCh37	16	67100663	67100663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	351	387	0	ENST00000412916.2:c.361G>A	p.Gly121Ser	p.G121S	ENST00000412916		121	Ggt/Agt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739066	40739066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	56	228	0	ENST00000373198.4:c.3218G>A	p.Gly1073Asp	p.G1073D	ENST00000373198	NM_133170.3	1073	gGc/gAc																																																																														
AKT2	0	MSKCC	GRCh37	19	40761126	40761127	+	inframe_insertion	In_Frame_Ins	INS	-	-	TATGACAAAGGTGTTGGGTCGCGGCCTCTCGGTCTTCATCAGCTGGCA			P-0003950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	112	255	0	ENST00000392038.2:c.178_225dup	p.Cys60_Ile75dup	p.C60_I75dup	ENST00000392038	NM_001626.4	60	-/TGCCAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	99	195	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TET1	0	MSKCC	GRCh37	10	70333081	70333081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	36	328	0	ENST00000373644.4:c.986T>A	p.Phe329Tyr	p.F329Y	ENST00000373644	NM_030625.2	329	tTc/tAc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920416	114920416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	85	350	0	ENST00000543371.1:c.1357C>T	p.Leu453Phe	p.L453F	ENST00000543371	NM_001198531.1	453	Ctt/Ttt																																																																														
RB1	0	MSKCC	GRCh37	13	49039206	49039206	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	224	280	0	ENST00000267163.4:c.2284C>T	p.Gln762Ter	p.Q762*	ENST00000267163	NM_000321.2	762	Cag/Tag																																																																														
AR	0	MSKCC	GRCh37	X	66942741	66942741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	85	520	0	ENST00000374690.3:c.2522G>T	p.Arg841Leu	p.R841L	ENST00000374690	NM_000044.3	841	cGt/cTt																																																																														
RB1	0	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	288	405	0	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga																																																																														
PMS1	0	MSKCC	GRCh37	2	190718746	190718746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	341	462	0	ENST00000441310.2:c.904C>T	p.Pro302Ser	p.P302S	ENST00000441310	NM_000534.4	302	Cct/Tct																																																																														
PMS1	0	MSKCC	GRCh37	2	190728735	190728735	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	216	308	0	ENST00000441310.2:c.2123T>G	p.Ile708Arg	p.I708R	ENST00000441310	NM_000534.4	708	aTa/aGa																																																																														
ROS1	0	MSKCC	GRCh37	6	117677851	117677851	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	240	420	0	ENST00000368508.3:c.4082G>A	p.Trp1361Ter	p.W1361*	ENST00000368508	NM_002944.2	1361	tGg/tAg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3830799	3830799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			51	185	376	0	ENST00000262367.5:c.1757C>T	p.Thr586Ile	p.T586I	ENST00000262367	NM_004380.2	586	aCc/aTc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021130	31021130	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	27	363	0	ENST00000375687.4:c.1129C>T	p.Gln377Ter	p.Q377*	ENST00000375687	NM_015338.5	377	Cag/Tag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15303190	15303190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs143385744		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	19	342	0	ENST00000263388.2:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000263388	NM_000435.2	113	cGa/cAa																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67202065	67202065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	30	235	0	ENST00000312629.5:c.1168G>A	p.Val390Met	p.V390M	ENST00000312629	NM_003952.2	390	Gtg/Atg																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	10	191	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137785	64137785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	18	274	0	ENST00000334205.4:c.1886G>A	p.Arg629His	p.R629H	ENST00000334205	NM_003942.2	629	cGc/cAc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	24	159	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	24	185	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	22	199	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	35	497	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	19	170	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
CIC	0	MSKCC	GRCh37	19	42791757	42791757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	20	284	0	ENST00000575354.2:c.643C>T	p.Arg215Trp	p.R215W	ENST00000575354	NM_015125.3	215	Cgg/Tgg																																																																														
EGFL7	0	MSKCC	GRCh37	9	139564387	139564387	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146989870		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	27	206	0	ENST00000308874.7:c.335G>A	p.Arg112Gln	p.R112Q	ENST00000308874		112	cGg/cAg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	18	133	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
AXL	0	MSKCC	GRCh37	19	41744385	41744385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	27	349	0	ENST00000301178.4:c.1010delC	p.Pro337LeufsTer29	p.P337Lfs*29	ENST00000301178	NM_021913.4	335	ggC/gg																																																																														
LATS1	0	MSKCC	GRCh37	6	149983228	149983228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	24	222	0	ENST00000253339.5:c.3030delT	p.Phe1010LeufsTer10	p.F1010Lfs*10	ENST00000253339		1010	ttT/tt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9777120	9777120	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	29	467	0	ENST00000377346.4:c.884A>C	p.Gln295Pro	p.Q295P	ENST00000377346	NM_005026.3	295	cAg/cCg																																																																														
SPEN	0	MSKCC	GRCh37	1	16259486	16259486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	17	156	0	ENST00000375759.3:c.6751G>A	p.Ala2251Thr	p.A2251T	ENST00000375759	NM_015001.2	2251	Gca/Aca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106355	27106355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	19	187	0	ENST00000324856.7:c.5966G>A	p.Arg1989Gln	p.R1989Q	ENST00000324856	NM_006015.4	1989	cGa/cAa																																																																														
RAD54L	0	MSKCC	GRCh37	1	46726490	46726490	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149246216		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	15	196	0	ENST00000371975.4:c.569C>T	p.Thr190Met	p.T190M	ENST00000371975	NM_003579.3	190	aCg/aTg																																																																														
JAK1	0	MSKCC	GRCh37	1	65323452	65323452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	24	153	0	ENST00000342505.4:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000342505	NM_002227.2	449	Gcc/Acc																																																																														
IKBKE	0	MSKCC	GRCh37	1	206651636	206651636	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	26	295	0	ENST00000367120.3:c.946C>A	p.Leu316Met	p.L316M	ENST00000367120	NM_014002.3	316	Ctg/Atg																																																																														
MSH2	0	MSKCC	GRCh37	2	47641507	47641507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	53	520	0	ENST00000233146.2:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000233146	NM_000251.2	298	Cag/Tag																																																																														
IRS1	0	MSKCC	GRCh37	2	227662211	227662211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	24	265	0	ENST00000305123.5:c.1244C>T	p.Ser415Leu	p.S415L	ENST00000305123	NM_005544.2	415	tCg/tTg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713292	30713292	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150022335		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	23	160	0	ENST00000359013.4:c.692C>T	p.Thr231Met	p.T231M	ENST00000359013	NM_001024847.2	231	aCg/aTg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185183540	185183540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	22	191	0	ENST00000265026.3:c.1394C>T	p.Ala465Val	p.A465V	ENST00000265026	NM_004721.4	465	gCg/gTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187527306	187527306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	13	192	0	ENST00000441802.2:c.10268C>T	p.Thr3423Met	p.T3423M	ENST00000441802	NM_005245.3	3423	aCg/aTg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523313	176523313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	19	213	0	ENST00000292408.4:c.1970C>T	p.Ala657Val	p.A657V	ENST00000292408	NM_213647.1	657	gCg/gTg																																																																														
SMO	0	MSKCC	GRCh37	7	128829305	128829305	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	32	492	0	ENST00000249373.3:c.313A>G	p.Lys105Glu	p.K105E	ENST00000249373	NM_005631.4	105	Aag/Gag																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738073	145738073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	51	282	0	ENST00000428558.2:c.2837G>A	p.Arg946His	p.R946H	ENST00000428558	NM_004260.3	946	cGt/cAt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399156	139399156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	19	224	0	ENST00000277541.6:c.4987C>T	p.Arg1663Trp	p.R1663W	ENST00000277541	NM_017617.3	1663	Cgg/Tgg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310860	123310860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147987917		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	37	354	2	ENST00000358487.5:c.568C>T	p.Arg190Trp	p.R190W	ENST00000358487	NM_000141.4	190	Cgg/Tgg																																																																														
MLL2	0	MSKCC	GRCh37	12	49424188	49424188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	14	146	0	ENST00000301067.7:c.13874C>T	p.Ser4625Leu	p.S4625L	ENST00000301067	NM_003482.3	4625	tCg/tTg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56494996	56494996	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201958747		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	17	202	0	ENST00000267101.3:c.3353G>A	p.Arg1118Gln	p.R1118Q	ENST00000267101	NM_001982.3	1118	cGg/cAg																																																																														
GLI1	0	MSKCC	GRCh37	12	57861781	57861781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	54	616	0	ENST00000228682.2:c.1082C>T	p.Pro361Leu	p.P361L	ENST00000228682	NM_005269.2	361	cCg/cTg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426812	121426812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	18	323	0	ENST00000257555.6:c.503G>A	p.Arg168His	p.R168H	ENST00000257555		168	cGc/cAc																																																																														
POLE	0	MSKCC	GRCh37	12	133250211	133250211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	22	333	0	ENST00000320574.5:c.1309G>A	p.Val437Met	p.V437M	ENST00000320574	NM_006231.2	437	Gtg/Atg																																																																														
FLT3	0	MSKCC	GRCh37	13	28611336	28611336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201905189		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	44	281	0	ENST00000241453.7:c.1295C>T	p.Thr432Met	p.T432M	ENST00000241453	NM_004119.2	432	aCg/aTg																																																																														
TSC2	0	MSKCC	GRCh37	16	2121873	2121873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	17	225	0	ENST00000219476.3:c.2035G>A	p.Val679Met	p.V679M	ENST00000219476	NM_000548.3	679	Gtg/Atg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89371644	89371644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	29	432	0	ENST00000301030.4:c.196G>A	p.Ala66Thr	p.A66T	ENST00000301030	NM_001256183.1	66	Gcc/Acc																																																																														
FANCA	0	MSKCC	GRCh37	16	89805092	89805092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	24	240	0	ENST00000389301.3:c.4285G>A	p.Asp1429Asn	p.D1429N	ENST00000389301	NM_000135.2	1429	Gac/Aac																																																																														
FANCA	0	MSKCC	GRCh37	16	89858916	89858916	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142620413		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	22	197	0	ENST00000389301.3:c.1046C>T	p.Ala349Val	p.A349V	ENST00000389301	NM_000135.2	349	gCg/gTg																																																																														
FLCN	0	MSKCC	GRCh37	17	17131277	17131277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	40	383	2	ENST00000285071.4:c.175C>T	p.Arg59Cys	p.R59C	ENST00000285071	NM_144997.5	59	Cgt/Tgt																																																																														
FLCN	0	MSKCC	GRCh37	17	17131387	17131387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	21	266	0	ENST00000285071.4:c.65C>T	p.Thr22Met	p.T22M	ENST00000285071	NM_144997.5	22	aCg/aTg																																																																														
CDK12	0	MSKCC	GRCh37	17	37682455	37682455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	23	222	0	ENST00000447079.4:c.3646C>T	p.Gln1216Ter	p.Q1216*	ENST00000447079	NM_015083.1	1216	Cag/Tag																																																																														
STAT5B	0	MSKCC	GRCh37	17	40353821	40353821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	41	654	0	ENST00000293328.3:c.2299C>T	p.Arg767Trp	p.R767W	ENST00000293328	NM_012448.3	767	Cgg/Tgg																																																																														
RNF43	0	MSKCC	GRCh37	17	56436097	56436097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	23	218	2	ENST00000407977.2:c.1040G>A	p.Gly347Asp	p.G347D	ENST00000407977		347	gGc/gAc																																																																														
TCF3	0	MSKCC	GRCh37	19	1612359	1612359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	49	646	1	ENST00000344749.5:c.1660C>T	p.Arg554Trp	p.R554W	ENST00000344749	NM_001136139.2	554	Cgg/Tgg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244106	5244106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	21	487	0	ENST00000357368.4:c.1376G>A	p.Gly459Asp	p.G459D	ENST00000357368	NM_002850.3	459	gGc/gAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5273534	5273534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	33	385	0	ENST00000357368.4:c.298C>T	p.Arg100Trp	p.R100W	ENST00000357368	NM_002850.3	100	Cgg/Tgg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600516	10600516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	24	258	0	ENST00000171111.5:c.1339C>T	p.Arg447Trp	p.R447W	ENST00000171111	NM_203500.1	447	Cgg/Tgg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11101911	11101911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	23	266	0	ENST00000344626.4:c.1331G>A	p.Arg444His	p.R444H	ENST00000344626	NM_003072.3	444	cGc/cAc																																																																														
AXL	0	MSKCC	GRCh37	19	41744408	41744408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	28	392	0	ENST00000301178.4:c.1028C>T	p.Thr343Met	p.T343M	ENST00000301178	NM_021913.4	343	aCg/aTg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52714649	52714649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	19	256	0	ENST00000322088.6:c.407C>T	p.Ala136Val	p.A136V	ENST00000322088	NM_014225.5	136	gCg/gTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9546608	9546608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	30	315	0	ENST00000353224.5:c.1414G>T	p.Gly472Trp	p.G472W	ENST00000353224	NM_177990.2	472	Ggg/Tgg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023408	31023408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	23	139	1	ENST00000375687.4:c.2893C>T	p.Arg965Ter	p.R965*	ENST00000375687	NM_015338.5	965	Cga/Tga																																																																														
SRC	0	MSKCC	GRCh37	20	36031696	36031696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	23	373	1	ENST00000358208.4:c.1525C>T	p.Arg509Trp	p.R509W	ENST00000358208		509	Cgg/Tgg																																																																														
ERG	0	MSKCC	GRCh37	21	39755732	39755732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	14	156	0	ENST00000288319.7:c.1033G>A	p.Asp345Asn	p.D345N	ENST00000288319	NM_182918.3	345	Gac/Aac																																																																														
ATRX	0	MSKCC	GRCh37	X	76890150	76890150	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	39	278	0	ENST00000373344.5:c.4744del	p.Thr1582GlnfsTer24	p.T1582Qfs*24	ENST00000373344	NM_000489.3	1582	Aca/ca																																																																														
JAK3	0	MSKCC	GRCh37	19	17946828	17946828	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	32	284	0	ENST00000458235.1:c.1819del	p.Ala607ProfsTer2	p.A607Pfs*2	ENST00000458235	NM_000215.3	607	Gcc/cc																																																																														
RNF43	0	MSKCC	GRCh37	17	56440729	56440729	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	24	324	0	ENST00000407977.2:c.489del	p.Ile164SerfsTer9	p.I164Sfs*9	ENST00000407977		163	ttG/tt																																																																														
CCND1	0	MSKCC	GRCh37	11	69456227	69456229	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	21	281	0	ENST00000227507.2:c.148_150del	p.Lys50del	p.K50del	ENST00000227507	NM_053056.2	49	cAGAag/cag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348566	89348569	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	66	904	0	ENST00000301030.4:c.4381_4384del	p.Lys1461GlufsTer69	p.K1461Efs*69	ENST00000301030	NM_001256183.1	1461	AAGAga/ga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	49	703	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138461543	138461543	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	34	335	0	ENST00000289153.2:c.478del	p.Ile160SerfsTer13	p.I160Sfs*13	ENST00000289153	NM_006219.2	160	Atc/tc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72923670	72923670	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	34	581	0	ENST00000268489.5:c.3408del	p.Gln1137ArgfsTer50	p.Q1137Rfs*50	ENST00000268489	NM_006885.3	1136	ggG/gg																																																																														
AXIN1	0	MSKCC	GRCh37	16	347748	347748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	26	292	0	ENST00000262320.3:c.1758delC	p.Asn587ThrfsTer118	p.N587Tfs*118	ENST00000262320	NM_003502.3	586	ccC/cc																																																																														
TBX3	0	MSKCC	GRCh37	12	115120697	115120697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	26	465	0	ENST00000257566.3:c.309del	p.Lys104ArgfsTer35	p.K104Rfs*35	ENST00000257566	NM_016569.3	103	ccC/cc																																																																														
RET	0	MSKCC	GRCh37	10	43617416	43617416	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	156	480	0	ENST00000355710.3:c.2753T>C	p.Met918Thr	p.M918T	ENST00000355710	NM_020975.4	918	aTg/aCg																																																																														
BCL6	0	MSKCC	GRCh37	3	187446270	187446270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	169	308	0	ENST00000232014.4:c.1418C>T	p.Pro473Leu	p.P473L	ENST00000232014	NM_001130845.1	473	cCg/cTg																																																																														
ETV1	0	MSKCC	GRCh37	7	13971370	13971370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	9	354	0	ENST00000405192.2:c.559C>T	p.Arg187Cys	p.R187C	ENST00000405192	NM_001163147.1	187	Cgc/Tgc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341141	8341141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	130	487	2	ENST00000356435.5:c.5075G>A	p.Arg1692His	p.R1692H	ENST00000356435		1692	cGt/cAt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12028615	12028615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	136	490	0	ENST00000353533.5:c.818A>G	p.Glu273Gly	p.E273G	ENST00000353533	NM_003010.3	273	gAa/gGa																																																																														
BCOR	0	MSKCC	GRCh37	X	39934080	39934080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	158	519	0	ENST00000378444.4:c.519C>A	p.Ser173Arg	p.S173R	ENST00000378444	NM_001123385.1	173	agC/agA																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			574	240	556	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15961367	15961367	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	205	489	1	ENST00000268712.3:c.6022A>T	p.Arg2008Ter	p.R2008*	ENST00000268712	NM_006311.3	2008	Aga/Tga																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161663	56161664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTGT			P-0004028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	180	451	0	ENST00000399503.3:c.1162_1166dup	p.Gln390CysfsTer48	p.Q390Cfs*48	ENST00000399503	NM_005921.1	387	agt/agTTTGTt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56167803	56167804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	508	503	1	ENST00000399503.3:c.1369dup	p.Thr457AsnfsTer4	p.T457Nfs*4	ENST00000399503	NM_005921.1	456	-/A																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952085	178952088	+	missense_variant	Missense_Mutation	ONP	ATCA	ATCA	GTCG			P-0004028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			746	234	481	0	ENST00000263967.3:c.3140_3143delinsGTCG	p.His1047_His1048delinsArgArg	p.H1047_H1048delinsRR	ENST00000263967	NM_006218.2	1047	cATCAt/cGTCGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	223	491	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
EPHA3	0	MSKCC	GRCh37	3	89156983	89156983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			719	53	310	0	ENST00000336596.2:c.85G>A	p.Glu29Lys	p.E29K	ENST00000336596	NM_005233.5	29	Gaa/Aaa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66230799	66230799	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			886	92	333	0	ENST00000273854.3:c.2172A>C	p.Glu724Asp	p.E724D	ENST00000273854	NM_004439.5	724	gaA/gaC																																																																														
TET1	0	MSKCC	GRCh37	10	70333864	70333864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	42	326	0	ENST00000373644.4:c.1769G>A	p.Arg590Gln	p.R590Q	ENST00000373644	NM_030625.2	590	cGa/cAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101203	41101203	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			112	86	87	0	ENST00000373198.4:c.1154-1G>T		p.X385_splice	ENST00000373198	NM_133170.3	385																																																																															
TP53	0	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	343	130	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499374	89499374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	99	110	0	ENST00000336596.2:c.2544C>G	p.Asp848Glu	p.D848E	ENST00000336596	NM_005233.5	848	gaC/gaG																																																																														
EPHA5	0	MSKCC	GRCh37	4	66233078	66233078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	139	115	0	ENST00000273854.3:c.1921C>A	p.His641Asn	p.H641N	ENST00000273854	NM_004439.5	641	Cac/Aac																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356212	66356212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	105	108	0	ENST00000273854.3:c.1285G>T	p.Val429Leu	p.V429L	ENST00000273854	NM_004439.5	429	Gtg/Ttg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467548	66467548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	150	133	0	ENST00000273854.3:c.721G>T	p.Ala241Ser	p.A241S	ENST00000273854	NM_004439.5	241	Gct/Tct																																																																														
INHBA	0	MSKCC	GRCh37	7	41729671	41729671	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	232	293	0	ENST00000242208.4:c.858G>C	p.Glu286Asp	p.E286D	ENST00000242208	NM_002192.2	286	gaG/gaC																																																																														
FGFR1	0	MSKCC	GRCh37	8	38275842	38275842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	90	81	1	ENST00000425967.3:c.1427G>A	p.Arg476Gln	p.R476Q	ENST00000425967	NM_001174067.1	476	cGg/cAg																																																																														
JAK2	0	MSKCC	GRCh37	9	5066676	5066676	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	198	124	0	ENST00000381652.3:c.1215-2A>G		p.X405_splice	ENST00000381652	NM_004972.3	405																																																																															
BRCA1	0	MSKCC	GRCh37	17	41246440	41246440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	169	163	0	ENST00000357654.3:c.1108G>A	p.Val370Ile	p.V370I	ENST00000357654	NM_007294.3	370	Gtt/Att																																																																														
STK11	0	MSKCC	GRCh37	19	1220493	1220493	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	138	110	0	ENST00000326873.7:c.586G>C	p.Gly196Arg	p.G196R	ENST00000326873	NM_000455.4	196	Ggc/Cgc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599910	10599910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	231	177	0	ENST00000171111.5:c.1666G>A	p.Ala556Thr	p.A556T	ENST00000171111	NM_203500.1	556	Gcc/Acc																																																																														
ARID2	0	MSKCC	GRCh37	12	46243529	46243529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	233	91	0	ENST00000334344.6:c.1883del	p.Pro628LeufsTer19	p.P628Lfs*19	ENST00000334344	NM_152641.2	628	Cct/ct																																																																														
GNAS	0	MSKCC	GRCh37	20	57478605	57478606	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGG			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	90	68	0	ENST00000371085.3:c.279_281dup	p.Gln93_Asp94insGlu	p.Q93_D94insE	ENST00000371085	NM_000516.4	93	cag/cAGGag																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691800	30691801	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCATGAC			P-0004054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	137	129	0	ENST00000359013.4:c.380_386dup	p.Lys130Ter	p.K130*	ENST00000359013	NM_001024847.2	126	tgc/tgCCATGACc																																																																														
TP53	0	MSKCC	GRCh37	17	7577140	7577144	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCA	TCCCA	-			P-0004058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	86	273	0	ENST00000269305.4:c.794_798del	p.Leu265ProfsTer5	p.L265Pfs*5	ENST00000269305	NM_001126112.2	265	cTGGGA/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	93	265	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176050327	176050327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	77	221	0	ENST00000367669.3:c.1238A>G	p.Tyr413Cys	p.Y413C	ENST00000367669	NM_022457.5	413	tAt/tGt																																																																														
BARD1	0	MSKCC	GRCh37	2	215632356	215632356	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	64	224	2	ENST00000260947.4:c.1418A>T	p.His473Leu	p.H473L	ENST00000260947	NM_000465.2	473	cAc/cTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187518948	187518948	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	83	233	0	ENST00000441802.2:c.12258-2A>T		p.X4086_splice	ENST00000441802	NM_005245.3	4086																																																																															
TERT	0	MSKCC	GRCh37	5	1294143	1294143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	37	176	0	ENST00000310581.5:c.858G>T	p.Glu286Asp	p.E286D	ENST00000310581	NM_198253.2	286	gaG/gaT																																																																														
IL7R	0	MSKCC	GRCh37	5	35876380	35876380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	67	156	0	ENST00000303115.3:c.1172G>A	p.Arg391Lys	p.R391K	ENST00000303115	NM_002185.3	391	aGg/aAg																																																																														
FLT4	0	MSKCC	GRCh37	5	180056352	180056352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	36	262	0	ENST00000261937.6:c.892C>T	p.His298Tyr	p.H298Y	ENST00000261937	NM_182925.4	298	Cac/Tac																																																																														
GLI1	0	MSKCC	GRCh37	12	57864811	57864811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	112	326	0	ENST00000228682.2:c.2288C>A	p.Pro763His	p.P763H	ENST00000228682	NM_005269.2	763	cCc/cAc																																																																														
CDH1	0	MSKCC	GRCh37	16	68855966	68855966	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs35187787		P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	65	310	1	ENST00000261769.5:c.1774G>T	p.Ala592Ser	p.A592S	ENST00000261769	NM_004360.3	592	Gcc/Tcc																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804181	46804181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	96	325	0	ENST00000290295.7:c.826G>T	p.Ala276Ser	p.A276S	ENST00000290295	NM_006361.5	276	Gcc/Tcc																																																																														
STK11	0	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	57	172	0	ENST00000326873.7:c.465-2A>C		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
KEAP1	0	MSKCC	GRCh37	19	10602298	10602298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	39	189	0	ENST00000171111.5:c.1280C>A	p.Ala427Asp	p.A427D	ENST00000171111	NM_203500.1	427	gCc/gAc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52725351	52725351	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	42	149	0	ENST00000322088.6:c.1519-1G>T		p.X507_splice	ENST00000322088	NM_014225.5	507																																																																															
ARID2	0	MSKCC	GRCh37	12	46230626	46230626	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	88	234	0	ENST00000334344.6:c.878delT	p.Leu293Ter	p.L293*	ENST00000334344	NM_152641.2	292	aTt/at																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	21	98	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	118	240	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	164	326	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100925	27100925	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	95	240	0	ENST00000324856.7:c.4207C>T	p.Gln1403Ter	p.Q1403*	ENST00000324856	NM_006015.4	1403	Cag/Tag																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911473	134911473	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	115	179	0	ENST00000398015.3:c.1938C>G	p.Ile646Met	p.I646M	ENST00000398015	NM_004441.4	646	atC/atG																																																																														
MDC1	0	MSKCC	GRCh37	6	30681461	30681461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	149	339	0	ENST00000376406.3:c.551C>T	p.Ser184Leu	p.S184L	ENST00000376406	NM_014641.2	184	tCa/tTa																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856500	111856500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	33	170	0	ENST00000341259.2:c.551C>A	p.Pro184His	p.P184H	ENST00000341259	NM_005475.2	184	cCc/cAc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41215366	41215366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	93	326	0	ENST00000357654.3:c.5177G>C	p.Arg1726Thr	p.R1726T	ENST00000357654	NM_007294.3	1726	aGa/aCa																																																																														
DNMT1	0	MSKCC	GRCh37	19	10260586	10260586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	90	397	0	ENST00000340748.4:c.2276T>C	p.Val759Ala	p.V759A	ENST00000340748		759	gTg/gCg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11134287	11134287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	97	176	1	ENST00000344626.4:c.2953G>A	p.Glu985Lys	p.E985K	ENST00000344626	NM_003072.3	985	Gag/Aag																																																																														
CCNE1	0	MSKCC	GRCh37	19	30312684	30312684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	159	326	0	ENST00000262643.3:c.665C>T	p.Ser222Leu	p.S222L	ENST00000262643	NM_001238.2	222	tCa/tTa																																																																														
AURKA	0	MSKCC	GRCh37	20	54963225	54963225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	198	316	0	ENST00000312783.6:c.29C>T	p.Ser10Leu	p.S10L	ENST00000312783	NM_198436.1	10	tCa/tTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			353	183	234	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
EGFR	0	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0004129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	3222	473	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																																																														
CSF1R	0	MSKCC	GRCh37	5	149436878	149436878	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			716	396	535	0	ENST00000286301.3:c.2291A>C	p.Gln764Pro	p.Q764P	ENST00000286301	NM_005211.3	764	cAg/cCg																																																																														
ARID2	0	MSKCC	GRCh37	12	46124999	46124999	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			751	300	427	0	ENST00000334344.6:c.187-1G>T		p.X63_splice	ENST00000334344	NM_152641.2	63																																																																															
RBM10	0	MSKCC	GRCh37	X	47035965	47035965	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			189	472	345	0	ENST00000329236.7:c.412G>T	p.Glu138Ter	p.E138*	ENST00000329236	NM_001204466.1	138	Gag/Tag																																																																														
AMER1	0	MSKCC	GRCh37	X	63412320	63412320	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			229	527	301	0	ENST00000330258.3:c.847G>T	p.Glu283Ter	p.E283*	ENST00000330258	NM_152424.3	283	Gag/Tag																																																																														
MED12	0	MSKCC	GRCh37	X	70356506	70356506	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			128	358	247	0	ENST00000374080.3:c.5400+1G>T		p.X1800_splice	ENST00000374080		1800																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178952091	178952091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	63	283	0	ENST00000263967.3:c.3146G>C	p.Gly1049Ala	p.G1049A	ENST00000263967	NM_006218.2	1049	gGt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7577529	7577529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	61	195	0	ENST00000269305.4:c.752T>G	p.Ile251Ser	p.I251S	ENST00000269305	NM_001126112.2	251	aTc/aGc																																																																														
STAG2	0	MSKCC	GRCh37	X	123229301	123229301	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0004161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	191	348	0	ENST00000218089.9:c.3783+2T>C		p.X1261_splice	ENST00000218089	NM_001042749.1	1261																																																																															
CDKN1B	0	MSKCC	GRCh37	12	12871145	12871146	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	71	140	0	ENST00000228872.4:c.374_375del	p.Ser125Ter	p.S125*	ENST00000228872	NM_004064.3	124	aaCTct/aact																																																																														
MTOR	0	MSKCC	GRCh37	1	11210277	11210277	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	67	262	0	ENST00000361445.4:c.4476A>C	p.Gln1492His	p.Q1492H	ENST00000361445	NM_004958.3	1492	caA/caC																																																																														
PMS1	0	MSKCC	GRCh37	2	190717415	190717415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	185	263	0	ENST00000441310.2:c.734C>T	p.Ala245Val	p.A245V	ENST00000441310	NM_000534.4	245	gCa/gTa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55155048	55155048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	313	248	0	ENST00000257290.5:c.2757C>A	p.Asp919Glu	p.D919E	ENST00000257290	NM_006206.4	919	gaC/gaA																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992601	72992601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	120	310	0	ENST00000268489.5:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000268489	NM_006885.3	482	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	206	217	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
TBX3	0	MSKCC	GRCh37	12	115117435	115117436	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0004168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	143	196	0	ENST00000257566.3:c.738_739del	p.His246GlnfsTer13	p.H246Qfs*13	ENST00000257566	NM_016569.3	246	caCAaa/caaa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18552762	18552762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	28	306	0	ENST00000266497.5:c.2173C>G	p.Leu725Val	p.L725V	ENST00000266497		725	Ctt/Gtt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16062086	16062089	+	frameshift_variant	Frame_Shift_Del	DEL	ATAA	ATAA	-			P-0004178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	100	443	0	ENST00000268712.3:c.717_720del	p.Ile239MetfsTer45	p.I239Mfs*45	ENST00000268712	NM_006311.3	239	atTTAT/at																																																																														
PTPRD	0	MSKCC	GRCh37	9	8317927	8317927	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	131	210	0	ENST00000356435.5:c.5686T>C	p.Ser1896Pro	p.S1896P	ENST00000356435		1896	Tcc/Ccc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	194	233	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PLK2	0	MSKCC	GRCh37	5	57751502	57751502	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	158	237	0	ENST00000274289.3:c.1489C>G	p.Leu497Val	p.L497V	ENST00000274289	NM_006622.3	497	Ctg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7573984	7573984	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	144	246	0	ENST00000269305.4:c.1043T>G	p.Leu348Trp	p.L348W	ENST00000269305	NM_001126112.2	348	tTg/tGg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591877	48591885	+	inframe_deletion	In_Frame_Del	DEL	TTGTTACTG	TTGTTACTG	-			P-0004206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	124	234	0	ENST00000342988.3:c.1043_1051del	p.Val348_Val350del	p.V348_V350del	ENST00000342988	NM_005359.5	347	aTTGTTACTGtt/att																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	21	421	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	46	443	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	11	155	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	0	MSKCC	GRCh37	1	27107095	27107095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	31	247	0	ENST00000324856.7:c.6706C>T	p.Arg2236Cys	p.R2236C	ENST00000324856	NM_006015.4	2236	Cgc/Tgc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259013	89259013	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	10	210	0	ENST00000336596.2:c.157G>A	p.Glu53Lys	p.E53K	ENST00000336596	NM_005233.5	53	Gaa/Aaa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259169	89259169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	33	325	0	ENST00000336596.2:c.313G>A	p.Asp105Asn	p.D105N	ENST00000336596	NM_005233.5	105	Gac/Aac																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851717	134851717	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150028142		P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	30	345	0	ENST00000398015.3:c.1123G>A	p.Asp375Asn	p.D375N	ENST00000398015	NM_004441.4	375	Gac/Aac																																																																														
HGF	0	MSKCC	GRCh37	7	81374404	81374404	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	28	465	0	ENST00000222390.5:c.658C>T	p.Arg220Ter	p.R220*	ENST00000222390	NM_000601.4	220	Cga/Tga																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106523606	106523606	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	30	242	0	ENST00000359195.3:c.2758A>T	p.Lys920Ter	p.K920*	ENST00000359195	NM_002649.2	920	Aag/Tag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18658254	18658254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	31	397	1	ENST00000266497.5:c.3059C>T	p.Ala1020Val	p.A1020V	ENST00000266497		1020	gCt/gTt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99459347	99459347	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	31	376	0	ENST00000268035.6:c.1983T>A	p.Asn661Lys	p.N661K	ENST00000268035	NM_000875.3	661	aaT/aaA																																																																														
NF1	0	MSKCC	GRCh37	17	29592263	29592263	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	47	402	0	ENST00000358273.4:c.4741A>T	p.Lys1581Ter	p.K1581*	ENST00000358273	NM_001042492.2	1581	Aaa/Taa																																																																														
CDK12	0	MSKCC	GRCh37	17	37676249	37676249	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	48	621	0	ENST00000447079.4:c.3004A>G	p.Thr1002Ala	p.T1002A	ENST00000447079	NM_015083.1	1002	Aca/Gca																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4099228	4099228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140111079		P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	82	400	0	ENST00000262948.5:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000262948	NM_030662.3	297	cGg/cAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76938229	76938229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	57	638	0	ENST00000373344.5:c.2519G>A	p.Arg840Lys	p.R840K	ENST00000373344	NM_000489.3	840	aGa/aAa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52598064	52598064	+	splice_donor_variant	Splice_Site	DEL	A	A	-			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	31	522	0	ENST00000394830.3:c.3800+2del		p.X1267_splice	ENST00000394830	NM_018313.4	1267																																																																															
FGFR4	0	MSKCC	GRCh37	5	176523669	176523670	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0004236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	29	539	0	ENST00000292408.4:c.2080_2081delinsTT	p.Pro694Leu	p.P694L	ENST00000292408	NM_213647.1	694	CCg/TTg																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	109	220	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032048	26032048	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	240	343	0	ENST00000244661.2:c.241A>G	p.Thr81Ala	p.T81A	ENST00000244661	NM_003537.3	81	Acc/Gcc																																																																														
RB1	0	MSKCC	GRCh37	13	48951166	48951166	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	91	102	0	ENST00000267163.4:c.1328C>A	p.Ser443Ter	p.S443*	ENST00000267163	NM_000321.2	443	tCa/tAa																																																																														
NF1	0	MSKCC	GRCh37	17	29556406	29556410	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAG	TTGAG	-			P-0004275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	100	108	0	ENST00000358273.4:c.2774_2778del	p.Leu925SerfsTer9	p.L925Sfs*9	ENST00000358273	NM_001042492.2	925	TTGAGt/t																																																																														
ATM	0	MSKCC	GRCh37	11	108206587	108206587	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	200	361	1	ENST00000278616.4:c.8167A>T	p.Arg2723Ter	p.R2723*	ENST00000278616	NM_000051.3	2723	Aga/Tga																																																																														
AXL	0	MSKCC	GRCh37	19	41743988	41743988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	69	576	2	ENST00000301178.4:c.923G>A	p.Arg308His	p.R308H	ENST00000301178	NM_021913.4	308	cGc/cAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0004279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	259	401	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	31	262	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TP53	0	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	39	280	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																														
ATR	0	MSKCC	GRCh37	3	142297500	142297500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	31	319	0	ENST00000350721.4:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000350721	NM_001184.3	16	cGg/cAg																																																																														
RAD52	0	MSKCC	GRCh37	12	1025826	1025826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	25	315	0	ENST00000358495.3:c.704C>T	p.Ala235Val	p.A235V	ENST00000358495	NM_134424.2	235	gCg/gTg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244706	46244706	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	58	415	0	ENST00000334344.6:c.2800C>T	p.Gln934Ter	p.Q934*	ENST00000334344	NM_152641.2	934	Caa/Taa																																																																														
XPO1	0	MSKCC	GRCh37	2	61719580	61719580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	29	537	0	ENST00000401558.2:c.1603G>T	p.Asp535Tyr	p.D535Y	ENST00000401558	NM_003400.3	535	Gat/Tat																																																																														
MST1R	0	MSKCC	GRCh37	3	49935629	49935629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	22	459	0	ENST00000296474.3:c.1735G>A	p.Gly579Arg	p.G579R	ENST00000296474	NM_002447.2	579	Gga/Aga																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822064	72822064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	24	433	0	ENST00000268489.5:c.10111C>A	p.Leu3371Met	p.L3371M	ENST00000268489	NM_006885.3	3371	Ctg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	55	497	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
BBC3	0	MSKCC	GRCh37	19	47735825	47735825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	26	505	0	ENST00000449228.1:c.35C>T	p.Pro12Leu	p.P12L	ENST00000449228	NM_001127240.2	12	cCa/cTa																																																																														
PTEN	0	MSKCC	GRCh37	10	89711912	89711913	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	33	468	0	ENST00000371953.3:c.532dup	p.Tyr178LeufsTer2	p.Y178Lfs*2	ENST00000371953	NM_000314.4	177	tat/taTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	12	326	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0004303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	27	372	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	48	228	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	148	247	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
SPEN	0	MSKCC	GRCh37	1	16257182	16257182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	117	385	0	ENST00000375759.3:c.4447G>A	p.Val1483Ile	p.V1483I	ENST00000375759	NM_015001.2	1483	Gtt/Att																																																																														
EPHB1	0	MSKCC	GRCh37	3	134960136	134960136	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	71	281	0	ENST00000398015.3:c.2493A>C	p.Gln831His	p.Q831H	ENST00000398015	NM_004441.4	831	caA/caC																																																																														
DAXX	0	MSKCC	GRCh37	6	33289089	33289089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	136	291	0	ENST00000374542.5:c.463C>T	p.Pro155Ser	p.P155S	ENST00000374542	NM_001141970.1	155	Ccc/Tcc																																																																														
TSHR	0	MSKCC	GRCh37	14	81610003	81610003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	75	237	0	ENST00000298171.2:c.1601G>A	p.Arg534His	p.R534H	ENST00000298171	NM_000369.2	534	cGc/cAc																																																																														
CDK12	0	MSKCC	GRCh37	17	37665992	37665992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	114	381	0	ENST00000447079.4:c.2644C>T	p.Arg882Trp	p.R882W	ENST00000447079	NM_015083.1	882	Cgg/Tgg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11137009	11137009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	161	384	1	ENST00000344626.4:c.3202G>A	p.Gly1068Ser	p.G1068S	ENST00000344626	NM_003072.3	1068	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	169	466	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
DICER1	0	MSKCC	GRCh37	14	95570120	95570120	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	70	333	0	ENST00000343455.3:c.3613T>G	p.Tyr1205Asp	p.Y1205D	ENST00000343455	NM_177438.2	1205	Tac/Gac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	30	102	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	116	372	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
TSC1	0	MSKCC	GRCh37	9	135778027	135778027	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	162	378	0	ENST00000298552.3:c.2356C>T	p.Arg786Ter	p.R786*	ENST00000298552	NM_001162426.1	786	Cga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	48878137	48878137	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	18	101	0	ENST00000267163.4:c.89A>C	p.Glu30Ala	p.E30A	ENST00000267163	NM_000321.2	30	gAg/gCg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44870231	44870231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	107	548	0	ENST00000377967.4:c.410G>T	p.Gly137Val	p.G137V	ENST00000377967	NM_021140.2	137	gGt/gTt																																																																														
STAG2	0	MSKCC	GRCh37	X	123200024	123200024	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	51	233	0	ENST00000218089.9:c.2097-1G>A		p.X699_splice	ENST00000218089	NM_001042749.1	699																																																																															
IKBKE	0	MSKCC	GRCh37	1	206648328	206648328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	158	252	0	ENST00000367120.3:c.349C>T	p.Arg117Cys	p.R117C	ENST00000367120	NM_014002.3	117	Cgc/Tgc																																																																														
IL10	0	MSKCC	GRCh37	1	206943200	206943200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	69	292	0	ENST00000423557.1:c.418G>C	p.Glu140Gln	p.E140Q	ENST00000423557	NM_000572.2	140	Gag/Cag																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0004401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	178	396	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	184	226	0	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc																																																																														
MTOR	0	MSKCC	GRCh37	1	11187093	11187093	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	142	312	0	ENST00000361445.4:c.6325C>T	p.Arg2109Ter	p.R2109*	ENST00000361445	NM_004958.3	2109	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7573991	7573991	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	38	569	0	ENST00000269305.4:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000269305	NM_001126112.2	346	Gag/Tag																																																																														
CIC	0	MSKCC	GRCh37	19	42795241	42795241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	60	360	0	ENST00000575354.2:c.2321C>T	p.Ala774Val	p.A774V	ENST00000575354	NM_015125.3	774	gCg/gTg																																																																														
MET	0	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	86	711	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
TGFBR1	0	MSKCC	GRCh37	9	101891349	101891349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	92	1006	2	ENST00000374994.4:c.310G>T	p.Asp104Tyr	p.D104Y	ENST00000374994	NM_004612.2	104	Gac/Tac																																																																														
EZH2	0	MSKCC	GRCh37	7	148507499	148507499	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	78	962	0	ENST00000320356.2:c.1955C>G	p.Ser652Cys	p.S652C	ENST00000320356	NM_004456.4	652	tCt/tGt																																																																														
MED12	0	MSKCC	GRCh37	X	70349610	70349610	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	143	1595	0	ENST00000374080.3:c.3772A>T	p.Ser1258Cys	p.S1258C	ENST00000374080		1258	Agt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	125	182	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	251	593	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0004424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	13	302	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	11	263	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	467	636	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
CXCR4	0	MSKCC	GRCh37	2	136872953	136872953	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	704	1135	0	ENST00000241393.3:c.545A>G	p.Asp182Gly	p.D182G	ENST00000241393	NM_003467.2	182	gAc/gGc																																																																														
MLL2	0	MSKCC	GRCh37	12	49443556	49443556	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	444	612	0	ENST00000301067.7:c.3815T>A	p.Leu1272Ter	p.L1272*	ENST00000301067	NM_003482.3	1272	tTg/tAg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44935941	44935941	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	297	316	0	ENST00000377967.4:c.2703-1G>A		p.X901_splice	ENST00000377967	NM_021140.2	901																																																																															
MED12	0	MSKCC	GRCh37	X	70338668	70338668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	72	415	0	ENST00000374080.3:c.64C>A	p.Pro22Thr	p.P22T	ENST00000374080		22	Ccc/Acc																																																																														
MLL	0	MSKCC	GRCh37	11	118347594	118347595	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	531	777	0	ENST00000534358.1:c.3232dup	p.Ala1078GlyfsTer11	p.A1078Gfs*11	ENST00000534358	NM_005933.3	1077	-/G																																																																														
ASXL2	0	MSKCC	GRCh37	2	25976426	25976426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	337	683	0	ENST00000435504.4:c.1119C>G	p.Phe373Leu	p.F373L	ENST00000435504		373	ttC/ttG																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413071	139413071	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	146	485	0	ENST00000277541.6:c.1071C>G	p.Phe357Leu	p.F357L	ENST00000277541	NM_017617.3	357	ttC/ttG																																																																														
PTEN	0	MSKCC	GRCh37	10	89624263	89624263	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	75	147	0	ENST00000371953.3:c.37A>T	p.Lys13Ter	p.K13*	ENST00000371953	NM_000314.4	13	Aaa/Taa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53254071	53254071	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0004434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	34	387	0	ENST00000375401.3:c.1A>T	p.Met1?	p.M1?	ENST00000375401	NM_004187.3	1	Atg/Ttg																																																																														
CDH1	0	MSKCC	GRCh37	16	68844167	68844167	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	254	477	0	ENST00000261769.5:c.755del	p.Val252GlufsTer30	p.V252Efs*30	ENST00000261769	NM_004360.3	252	gTa/ga																																																																														
RB1	0	MSKCC	GRCh37	13	49050914	49050918	+	frameshift_variant	Frame_Shift_Del	DEL	CAACC	CAACC	-			P-0004434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	27	296	0	ENST00000267163.4:c.2599_2603del	p.Asn867SerfsTer2	p.N867Sfs*2	ENST00000267163	NM_000321.2	866	agCAACCct/agct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	62	229	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	99	225	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803571	1803571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	111	253	0	ENST00000260795.2:c.749C>A	p.Pro250Gln	p.P250Q	ENST00000260795		250	cCg/cAg																																																																														
BRAF	0	MSKCC	GRCh37	7	140477854	140477854	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	181	552	0	ENST00000288602.6:c.1454T>G	p.Leu485Trp	p.L485W	ENST00000288602	NM_004333.4	485	tTg/tGg																																																																														
BAP1	0	MSKCC	GRCh37	3	52439917	52439918	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	139	279	0	ENST00000460680.1:c.794dup	p.Thr266AsnfsTer18	p.T266Nfs*18	ENST00000460680	NM_004656.3	265	gta/gtTa																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	177	397	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
KDR	0	MSKCC	GRCh37	4	55976830	55976830	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148390587		P-0004447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	142	494	0	ENST00000263923.4:c.1082A>G	p.Glu361Gly	p.E361G	ENST00000263923	NM_002253.2	361	gAa/gGa																																																																														
RAD50	0	MSKCC	GRCh37	5	131977959	131977959	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	109	420	0	ENST00000265335.6:c.3842A>T	p.Glu1281Val	p.E1281V	ENST00000265335		1281	gAa/gTa																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727442	66727442	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	91	360	0	ENST00000307102.5:c.158T>G	p.Phe53Cys	p.F53C	ENST00000307102	NM_002755.3	53	tTt/tGt																																																																														
STK11	0	MSKCC	GRCh37	19	1207036	1207038	+	frameshift_variant	Frame_Shift_Del	DEL	CGG	CGG	TT			P-0004447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	176	382	0	ENST00000326873.7:c.124_126delinsTT	p.Arg42LeufsTer9	p.R42Lfs*9	ENST00000326873	NM_000455.4	42	CGG/TT																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	87	628	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	88	550	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
CDKN2C	0	MSKCC	GRCh37	1	51439706	51439706	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	139	370	0	ENST00000262662.1:c.271G>T	p.Glu91Ter	p.E91*	ENST00000262662		91	Gag/Tag																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948376	71948376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004526-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			764	121	824	0	ENST00000298229.2:c.3088C>T	p.Arg1030Trp	p.R1030W	ENST00000298229	NM_001567.3	1030	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0004528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	25	419	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781324	3781326	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0004528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	25	399	0	ENST00000262367.5:c.5039_5041delCCT	p.Ser1680del	p.S1680del	ENST00000262367	NM_004380.2	1680	tCCTtg/ttg																																																																														
TP53	0	MSKCC	GRCh37	17	7578397	7578397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	76	261	0	ENST00000269305.4:c.533A>C	p.His178Pro	p.H178P	ENST00000269305	NM_001126112.2	178	cAc/cCc																																																																														
TP53	0	MSKCC	GRCh37	17	7579559	7579559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	21	286	0	ENST00000269305.4:c.128delT	p.Leu43Ter	p.L43*	ENST00000269305	NM_001126112.2	43	tTg/tg																																																																														
CDC73	0	MSKCC	GRCh37	1	193099343	193099343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	36	350	0	ENST00000367435.3:c.277G>T	p.Asp93Tyr	p.D93Y	ENST00000367435	NM_024529.4	93	Gat/Tat																																																																														
FLT3	0	MSKCC	GRCh37	13	28622419	28622419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	21	306	0	ENST00000241453.7:c.1198G>A	p.Gly400Arg	p.G400R	ENST00000241453	NM_004119.2	400	Gga/Aga																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022732	31022733	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	14	271	0	ENST00000375687.4:c.2218dupA	p.Thr740AsnfsTer34	p.T740Nfs*34	ENST00000375687	NM_015338.5	739	-/A																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	221	356	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	91	228	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	117	223	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																														
STAG2	0	MSKCC	GRCh37	X	123171455	123171455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	119	247	0	ENST00000218089.9:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000218089	NM_001042749.1	123	Cag/Tag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52610710	52610710	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	128	319	0	ENST00000394830.3:c.3463G>T	p.Glu1155Ter	p.E1155*	ENST00000394830	NM_018313.4	1155	Gaa/Taa																																																																														
HRAS	0	MSKCC	GRCh37	11	533548	533548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	109	340	0	ENST00000311189.7:c.355G>A	p.Asp119Asn	p.D119N	ENST00000311189		119	Gac/Aac																																																																														
POLD1	0	MSKCC	GRCh37	19	50918831	50918831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	100	416	0	ENST00000440232.2:c.2701G>A	p.Val901Met	p.V901M	ENST00000440232	NM_002691.3	901	Gtg/Atg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44918705	44918705	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	125	182	0	ENST00000377967.4:c.1188T>A	p.Tyr396Ter	p.Y396*	ENST00000377967	NM_021140.2	396	taT/taA																																																																														
STAG2	0	MSKCC	GRCh37	X	123171462	123171462	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	110	233	0	ENST00000218089.9:c.374C>G	p.Ser125Ter	p.S125*	ENST00000218089	NM_001042749.1	125	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0004551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	248	571	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68847305	68847305	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	62	535	7	ENST00000261769.5:c.1227G>A	p.Trp409Ter	p.W409*	ENST00000261769	NM_004360.3	409	tgG/tgA																																																																														
RHOA	0	MSKCC	GRCh37	3	49399980	49399982	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0004551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	96	642	1	ENST00000418115.1:c.355_357delAAG	p.Lys119del	p.K119del	ENST00000418115	NM_001664.2	119	AAG/-																																																																														
ERBB4	0	MSKCC	GRCh37	2	212543787	212543787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	55	307	1	ENST00000342788.4:c.1612C>A	p.Leu538Ile	p.L538I	ENST00000342788	NM_005235.2	538	Ctc/Atc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52598099	52598099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	169	420	1	ENST00000394830.3:c.3767C>T	p.Ala1256Val	p.A1256V	ENST00000394830	NM_018313.4	1256	gCt/gTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692970	89692970	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	38	177	0	ENST00000371953.3:c.454C>G	p.Leu152Val	p.L152V	ENST00000371953	NM_000314.4	152	Cta/Gta																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907495	32907495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	59	294	0	ENST00000380152.3:c.1880C>T	p.Ala627Val	p.A627V	ENST00000380152		627	gCa/gTa																																																																														
IRS2	0	MSKCC	GRCh37	13	110434976	110434976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	85	219	0	ENST00000375856.3:c.3425G>A	p.Gly1142Glu	p.G1142E	ENST00000375856	NM_003749.2	1142	gGg/gAg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52598105	52598106	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0004561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	161	428	1	ENST00000394830.3:c.3759_3760dup	p.Leu1254HisfsTer7	p.L1254Hfs*7	ENST00000394830	NM_018313.4	1254	ctc/cACtc																																																																														
VHL	0	MSKCC	GRCh37	3	10183695	10183698	+	frameshift_variant	Frame_Shift_Del	DEL	AGGC	AGGC	-			P-0004561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	84	245	0	ENST00000256474.2:c.164_167del	p.Glu55AlafsTer11	p.E55Afs*11	ENST00000256474	NM_000551.3	55	gAGGCc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0004565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	131	506	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247204	153247204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	23	542	1	ENST00000281708.4:c.1598G>T	p.Cys533Phe	p.C533F	ENST00000281708	NM_033632.3	533	tGt/tTt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8340459	8340459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	29	379	0	ENST00000356435.5:c.5137G>A	p.Ala1713Thr	p.A1713T	ENST00000356435		1713	Gcc/Acc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114900942	114900942	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	117	623	2	ENST00000543371.1:c.553-1G>T		p.X185_splice	ENST00000543371	NM_001198531.1	185																																																																															
BRD4	0	MSKCC	GRCh37	19	15375540	15375540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	131	316	0	ENST00000263377.2:c.887C>T	p.Thr296Ile	p.T296I	ENST00000263377	NM_058243.2	296	aCc/aTc																																																																														
RB1	0	MSKCC	GRCh37	13	48881473	48881473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	27	439	0	ENST00000267163.4:c.195del	p.Ile66TyrfsTer11	p.I66Yfs*11	ENST00000267163	NM_000321.2	65	aaG/aa																																																																														
ATM	0	MSKCC	GRCh37	11	108196173	108196173	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	75	582	0	ENST00000278616.4:c.6709A>T	p.Lys2237Ter	p.K2237*	ENST00000278616	NM_000051.3	2237	Aag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097747	27097748	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0004568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	100	538	0	ENST00000324856.7:c.3337_3338del	p.Pro1113SerfsTer9	p.P1113Sfs*9	ENST00000324856	NM_006015.4	1112	gaCCct/gact																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0004571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	39	482	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	141	749	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	31	483	2	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
REL	0	MSKCC	GRCh37	2	61108985	61108985	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	32	290	0	ENST00000295025.8:c.10G>T	p.Gly4Cys	p.G4C	ENST00000295025	NM_002908.2	4	Ggt/Tgt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420202	88420203	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	40	642	0	ENST00000360948.2:c.2483_2484delinsTT	p.Gly828Val	p.G828V	ENST00000360948	NM_001012338.2	828	gGG/gTT																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			951	763	904	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TSC2	0	MSKCC	GRCh37	16	2105402	2105402	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			236	526	754	1	ENST00000219476.3:c.482-1G>A		p.X161_splice	ENST00000219476	NM_000548.3	161																																																																															
CREBBP	0	MSKCC	GRCh37	16	3786748	3786748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			333	737	1071	0	ENST00000262367.5:c.4463C>T	p.Pro1488Leu	p.P1488L	ENST00000262367	NM_004380.2	1488	cCa/cTa																																																																														
BRAF	0	MSKCC	GRCh37	7	140500213	140500213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			296	795	936	0	ENST00000288602.6:c.929C>T	p.Thr310Ile	p.T310I	ENST00000288602	NM_004333.4	310	aCt/aTt																																																																														
MEN1	0	MSKCC	GRCh37	11	64573732	64573732	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			220	470	666	0	ENST00000337652.1:c.1036del	p.Trp346GlyfsTer27	p.W346Gfs*27	ENST00000337652	NM_130803.2	346	Tgg/gg																																																																														
LATS2	0	MSKCC	GRCh37	13	21562637	21562637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			251	213	232	0	ENST00000382592.4:c.1282G>A	p.Ala428Thr	p.A428T	ENST00000382592	NM_014572.2	428	Gcc/Acc																																																																														
RB1	0	MSKCC	GRCh37	13	48954356	48954356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			593	304	459	0	ENST00000267163.4:c.1477G>A	p.Val493Ile	p.V493I	ENST00000267163	NM_000321.2	493	Gtt/Att																																																																														
DIS3	0	MSKCC	GRCh37	13	73334666	73334666	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			714	422	590	0	ENST00000377767.4:c.2793+1G>A		p.X931_splice	ENST00000377767	NM_014953.3	931																																																																															
BRCA1	0	MSKCC	GRCh37	17	41246685	41246685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			854	564	705	0	ENST00000357654.3:c.863G>A	p.Ser288Asn	p.S288N	ENST00000357654	NM_007294.3	288	aGc/aAc																																																																														
AKT2	0	MSKCC	GRCh37	19	40762961	40762961	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			591	392	536	0	ENST00000392038.2:c.47G>A	p.Gly16Asp	p.G16D	ENST00000392038	NM_001626.4	16	gGt/gAt																																																																														
ASXL2	0	MSKCC	GRCh37	2	25972600	25972600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			245	593	728	0	ENST00000435504.4:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000435504		609	Gac/Aac																																																																														
MSH2	0	MSKCC	GRCh37	2	47702388	47702388	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			190	343	483	0	ENST00000233146.2:c.1984C>T	p.Gln662Ter	p.Q662*	ENST00000233146	NM_000251.2	662	Cag/Tag																																																																														
ASXL1	0	MSKCC	GRCh37	20	31017141	31017141	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			692	479	614	0	ENST00000375687.4:c.472G>A	p.Ala158Thr	p.A158T	ENST00000375687	NM_015338.5	158	Gcg/Acg																																																																														
SETD2	0	MSKCC	GRCh37	3	47165534	47165544	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCAGGTGGA	GGGCAGGTGGA	-			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			319	695	957	0	ENST00000409792.3:c.582_592del	p.Pro195SerfsTer38	p.P195Sfs*38	ENST00000409792	NM_014159.6	194	ccTCCACCTGCCCaa/ccaa																																																																														
DAXX	0	MSKCC	GRCh37	6	33289247	33289247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			202	454	573	1	ENST00000374542.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000374542	NM_001141970.1	102	tCg/tTg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100375	157100375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			85	252	374	0	ENST00000346085.5:c.1312C>T	p.Pro438Ser	p.P438S	ENST00000346085	NM_020732.3	438	Ccc/Tcc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391148	139391148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004595-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			463	351	491	1	ENST00000277541.6:c.7043G>A	p.Gly2348Asp	p.G2348D	ENST00000277541	NM_017617.3	2348	gGc/gAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004607-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			552	491	609	4	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715721	30715721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004607-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			290	296	514	1	ENST00000359013.4:c.1454G>A	p.Arg485His	p.R485H	ENST00000359013	NM_001024847.2	485	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004607-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			336	255	605	0	ENST00000269305.4:c.712T>C	p.Cys238Arg	p.C238R	ENST00000269305	NM_001126112.2	238	Tgt/Cgt																																																																														
STK11	0	MSKCC	GRCh37	19	1218423	1218423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004607-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			330	279	624	0	ENST00000326873.7:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000326873	NM_000455.4	100	Caa/Taa																																																																														
MDM4	0	MSKCC	GRCh37	1	204494673	204494673	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004607-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1538	268	504	1	ENST00000367182.3:c.27G>C	p.Gln9His	p.Q9H	ENST00000367182	NM_001278516.1	9	caG/caC																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	332	362	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31381362	31381362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113400552		P-0004616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	41	232	2	ENST00000328111.2:c.1087C>T	p.Arg363Cys	p.R363C	ENST00000328111	NM_006892.3	363	Cgt/Tgt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390765	139390765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	119	241	0	ENST00000277541.6:c.7426G>A	p.Val2476Met	p.V2476M	ENST00000277541	NM_017617.3	2476	Gtg/Atg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478926	56478926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	464	572	0	ENST00000267101.3:c.382A>G	p.Ser128Gly	p.S128G	ENST00000267101	NM_001982.3	128	Agc/Ggc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350090	89350090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	550	734	1	ENST00000301030.4:c.2860G>A	p.Ala954Thr	p.A954T	ENST00000301030	NM_001256183.1	954	Gcc/Acc																																																																														
AKT2	0	MSKCC	GRCh37	19	40739856	40739856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	82	227	0	ENST00000392038.2:c.1369G>A	p.Asp457Asn	p.D457N	ENST00000392038	NM_001626.4	457	Gac/Aac																																																																														
ASXL1	0	MSKCC	GRCh37	20	31025023	31025023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	295	309	0	ENST00000375687.4:c.4508C>T	p.Ser1503Leu	p.S1503L	ENST00000375687	NM_015338.5	1503	tCg/tTg																																																																														
MLL	0	MSKCC	GRCh37	11	118307602	118307616	+	inframe_deletion	In_Frame_Del	DEL	CCTGCGCCGGTTCCG	CCTGCGCCGGTTCCG	-			P-0004616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	149	221	0	ENST00000534358.1:c.375_389delCCTGCGCCGGTTCCG	p.Asn125_Arg130delinsLys	p.N125_R130delinsK	ENST00000534358	NM_005933.3	125	aaCCTGCGCCGGTTCCGg/aag																																																																														
KDR	0	MSKCC	GRCh37	4	55968604	55968604	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	126	470	0	ENST00000263923.4:c.2059delT	p.Ser687HisfsTer22	p.S687Hfs*22	ENST00000263923	NM_002253.2	687	Tca/ca																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0004619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	42	416	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0004619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	35	205	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
MAPK1	0	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	48	620	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138474685	138474685	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	59	830	0	ENST00000289153.2:c.308G>C	p.Arg103Thr	p.R103T	ENST00000289153	NM_006219.2	103	aGa/aCa																																																																														
PARK2	0	MSKCC	GRCh37	6	161969912	161969912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	73	607	0	ENST00000366898.1:c.1057G>A	p.Glu353Lys	p.E353K	ENST00000366898	NM_004562.2	353	Gaa/Aaa																																																																														
KLF4	0	MSKCC	GRCh37	9	110248167	110248167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	56	512	0	ENST00000374672.4:c.1305G>C	p.Trp435Cys	p.W435C	ENST00000374672	NM_004235.4	435	tgG/tgC																																																																														
ATM	0	MSKCC	GRCh37	11	108143566	108143566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	44	641	1	ENST00000278616.4:c.3271G>A	p.Glu1091Lys	p.E1091K	ENST00000278616	NM_000051.3	1091	Gag/Aag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37884028	37884028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	40	686	0	ENST00000269571.5:c.3499C>G	p.Leu1167Val	p.L1167V	ENST00000269571		1167	Ctg/Gtg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214591	5214591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	33	684	0	ENST00000357368.4:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000357368	NM_002850.3	1492	cGg/cAg																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872524	35872525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	123	854	0	ENST00000216797.5:c.378dup	p.Ala127CysfsTer2	p.A127Cfs*2	ENST00000216797	NM_020529.2	126	-/T																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	203	249	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
CDH1	0	MSKCC	GRCh37	16	68847252	68847252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	37	246	0	ENST00000261769.5:c.1174G>T	p.Val392Leu	p.V392L	ENST00000261769	NM_004360.3	392	Gta/Tta																																																																														
KIT	0	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	300	409	0	ENST00000288135.5:c.1669T>C	p.Trp557Arg	p.W557R	ENST00000288135	NM_000222.2	557	Tgg/Cgg																																																																														
KIT	0	MSKCC	GRCh37	4	55599341	55599341	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	213	261	0	ENST00000288135.5:c.2467T>G	p.Tyr823Asp	p.Y823D	ENST00000288135	NM_000222.2	823	Tat/Gat																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55151583	55151583	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	331	369	0	ENST00000257290.5:c.2369T>G	p.Leu790Arg	p.L790R	ENST00000257290	NM_006206.4	790	cTt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	430	229	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	131	333	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
MALT1	0	MSKCC	GRCh37	18	56376768	56376768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	83	618	0	ENST00000348428.3:c.808G>A	p.Glu270Lys	p.E270K	ENST00000348428	NM_006785.3	270	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0004652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	61	537	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41280804	41280804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	54	418	0	ENST00000349496.5:c.2317C>T	p.Gln773Ter	p.Q773*	ENST00000349496	NM_001904.3	773	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	58	419	0	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577573	7577573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	46	354	0	ENST00000269305.4:c.708C>A	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taC/taA																																																																														
STAG2	0	MSKCC	GRCh37	X	123191816	123191817	+	inframe_insertion	In_Frame_Ins	INS	-	-	TAG			P-0004652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	127	282	0	ENST00000218089.9:c.1406_1408dup	p.Leu469_Glu470insVal	p.L469_E470insV	ENST00000218089	NM_001042749.1	469	cta/cTAGta																																																																														
SMARCA4	6597	MSKCC	GRCh37	19	11152198	11152200	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0004652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	81	443	0	ENST00000344626.4:c.4391_4393del	p.Lys1464del	p.K1464del	ENST00000344626	NM_003072.3	1462	atGAAg/atg																																																																														
STK11	0	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	88	496	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																																																														
SPEN	0	MSKCC	GRCh37	1	16261655	16261655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	55	368	0	ENST00000375759.3:c.8920C>A	p.Gln2974Lys	p.Q2974K	ENST00000375759	NM_015001.2	2974	Cag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16261698	16261698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	47	343	2	ENST00000375759.3:c.8963C>T	p.Pro2988Leu	p.P2988L	ENST00000375759	NM_015001.2	2988	cCt/cTt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212286805	212286805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	99	341	0	ENST00000342788.4:c.2891G>T	p.Arg964Ile	p.R964I	ENST00000342788	NM_005235.2	964	aGa/aTa																																																																														
E2F3	0	MSKCC	GRCh37	6	20402500	20402500	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	32	226	0	ENST00000346618.3:c.37C>A	p.Leu13Met	p.L13M	ENST00000346618	NM_001949.4	13	Ctg/Atg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992270	72992270	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	87	771	0	ENST00000268489.5:c.1775A>C	p.Asp592Ala	p.D592A	ENST00000268489	NM_006885.3	592	gAc/gCc																																																																														
RAD51C	0	MSKCC	GRCh37	17	56770023	56770023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	58	362	0	ENST00000337432.4:c.19C>T	p.Arg7Cys	p.R7C	ENST00000337432	NM_058216.2	7	Cgc/Tgc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602488	10602488	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	75	285	0	ENST00000171111.5:c.1090G>T	p.Gly364Cys	p.G364C	ENST00000171111	NM_203500.1	364	Ggc/Tgc																																																																														
IGF2	0	MSKCC	GRCh37	11	2154394	2154395	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0004659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	48	457	2	ENST00000434045.2:c.533_534delinsAT	p.Ser178Tyr	p.S178Y	ENST00000434045	NM_001127598.1	178	tCC/tAT																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	39	356	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
MTOR	0	MSKCC	GRCh37	1	11300457	11300457	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	26	351	0	ENST00000361445.4:c.1689T>A	p.His563Gln	p.H563Q	ENST00000361445	NM_004958.3	563	caT/caA																																																																														
FOXP1	0	MSKCC	GRCh37	3	71021728	71021728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	31	471	0	ENST00000318789.4:c.1630C>T	p.Arg544Ter	p.R544*	ENST00000318789	NM_032682.5	544	Cga/Tga																																																																														
RYBP	0	MSKCC	GRCh37	3	72428200	72428200	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	44	315	0	ENST00000477973.2:c.690A>G	p.His231Arg	p.H231R	ENST00000477973	NM_012234.5	231	cAc/cGc																																																																														
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	36	369	0	ENST00000288135.5:c.1676T>G	p.Val559Gly	p.V559G	ENST00000288135	NM_000222.2	559	gTt/gGt																																																																														
DAXX	0	MSKCC	GRCh37	6	33289049	33289049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	48	232	0	ENST00000374542.5:c.503C>A	p.Pro168His	p.P168H	ENST00000374542	NM_001141970.1	168	cCc/cAc																																																																														
MLL3	0	MSKCC	GRCh37	7	152055678	152055678	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	184	488	0	ENST00000262189.6:c.244G>T	p.Glu82Ter	p.E82*	ENST00000262189	NM_170606.2	82	Gaa/Taa																																																																														
WT1	0	MSKCC	GRCh37	11	32417827	32417827	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	52	348	0	ENST00000332351.3:c.1225C>T	p.Gln409Ter	p.Q409*	ENST00000332351	NM_024426.4	409	Cag/Tag																																																																														
KDM5A	0	MSKCC	GRCh37	12	461438	461438	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	90	453	0	ENST00000399788.2:c.1082A>C	p.Tyr361Ser	p.Y361S	ENST00000399788	NM_001042603.1	361	tAt/tCt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32937543	32937543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	273	339	0	ENST00000380152.3:c.8204C>T	p.Pro2735Leu	p.P2735L	ENST00000380152		2735	cCc/cTc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347128	89347128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	40	548	0	ENST00000301030.4:c.5822C>T	p.Ala1941Val	p.A1941V	ENST00000301030	NM_001256183.1	1941	gCc/gTc																																																																														
MLH1	0	MSKCC	GRCh37	3	37067352	37067352	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	100	437	0	ENST00000231790.2:c.1263T>G	p.Ser421Arg	p.S421R	ENST00000231790	NM_000249.3	421	agT/agG																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2229	455	551	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0004695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	1176	440	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	176	352	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
FLT4	0	MSKCC	GRCh37	5	180039610	180039610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs202140363		P-0004695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	51	368	0	ENST00000261937.6:c.3433C>T	p.Arg1145Cys	p.R1145C	ENST00000261937	NM_182925.4	1145	Cgc/Tgc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851381	156851381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	98	444	0	ENST00000524377.1:c.2338C>T	p.Arg780Trp	p.R780W	ENST00000524377	NM_002529.3	780	Cgg/Tgg																																																																														
SOX17	0	MSKCC	GRCh37	8	55372389	55372389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	48	392	0	ENST00000297316.4:c.1079G>A	p.Arg360His	p.R360H	ENST00000297316	NM_022454.3	360	cGc/cAc																																																																														
RB1	0	MSKCC	GRCh37	13	49039435	49039435	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	425	579	0	ENST00000267163.4:c.2420C>G	p.Ser807Ter	p.S807*	ENST00000267163	NM_000321.2	807	tCa/tGa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	226	431	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
NUP93	0	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	401	657	1	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1207118	1207118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	227	461	0	ENST00000326873.7:c.206C>A	p.Ser69Ter	p.S69*	ENST00000326873	NM_000455.4	69	tCg/tAg																																																																														
XPO1	0	MSKCC	GRCh37	2	61711080	61711080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	227	478	0	ENST00000401558.2:c.2669C>T	p.Ala890Val	p.A890V	ENST00000401558	NM_003400.3	890	gCa/gTa																																																																														
IL7R	0	MSKCC	GRCh37	5	35876384	35876384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	240	402	0	ENST00000303115.3:c.1176G>T	p.Glu392Asp	p.E392D	ENST00000303115	NM_002185.3	392	gaG/gaT																																																																														
DAXX	0	MSKCC	GRCh37	6	33287237	33287237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	248	460	0	ENST00000374542.5:c.1860C>G	p.His620Gln	p.H620Q	ENST00000374542	NM_001141970.1	620	caC/caG																																																																														
ATM	0	MSKCC	GRCh37	11	108099967	108099967	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	206	358	0	ENST00000278616.4:c.248C>G	p.Ser83Ter	p.S83*	ENST00000278616	NM_000051.3	83	tCa/tGa																																																																														
B2M	0	MSKCC	GRCh37	15	45007855	45007855	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	168	355	0	ENST00000558401.1:c.302G>C	p.Arg101Pro	p.R101P	ENST00000558401	NM_004048.2	101	cGt/cCt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610247	10610247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	310	579	0	ENST00000171111.5:c.463G>T	p.Val155Phe	p.V155F	ENST00000171111	NM_203500.1	155	Gtc/Ttc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132400	11132400	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	290	554	0	ENST00000344626.4:c.2617-1G>A		p.X873_splice	ENST00000344626	NM_003072.3	873																																																																															
NOTCH3	0	MSKCC	GRCh37	19	15299048	15299048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	275	517	0	ENST00000263388.2:c.1490C>T	p.Ser497Leu	p.S497L	ENST00000263388	NM_000435.2	497	tCg/tTg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171705	36171705	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	127	410	0	ENST00000300305.3:c.860A>T	p.Tyr287Phe	p.Y287F	ENST00000300305		287	tAc/tTc																																																																														
MED12	0	MSKCC	GRCh37	X	70348978	70348978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	325	264	0	ENST00000374080.3:c.3490G>C	p.Asp1164His	p.D1164H	ENST00000374080		1164	Gac/Cac																																																																														
APC	0	MSKCC	GRCh37	5	112164654	112164654	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	181	270	0	ENST00000257430.4:c.1730del	p.Leu577Ter	p.L577*	ENST00000257430	NM_000038.5	576	gcT/gc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023339	31023340	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0004699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	163	360	0	ENST00000375687.4:c.2824_2825delinsTT	p.Gly942Leu	p.G942L	ENST00000375687	NM_015338.5	942	GGg/TTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0004730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	166	241	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
MAX	0	MSKCC	GRCh37	14	65544678	65544680	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0004730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	219	319	0	ENST00000358664.4:c.246_248del	p.Gln83del	p.Q83del	ENST00000358664	NM_002382.4	82	caGCAa/caa																																																																														
TP53	0	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	135	355	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																														
RB1	0	MSKCC	GRCh37	13	48941628	48941628	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0004743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	136	314	0	ENST00000267163.4:c.940-2A>G		p.X314_splice	ENST00000267163	NM_000321.2	314																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	383	262	0	ENST00000263967.3:c.1033A>C	p.Asn345His	p.N345H	ENST00000263967	NM_006218.2	345	Aat/Cat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0004743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	4428	339	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593615	+	inframe_deletion	In_Frame_Del	DEL	AGTGGAAGGTTGTTG	AGTGGAAGGTTGTTG	-			P-0004760-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			557	410	682	0	ENST00000288135.5:c.1669_1683del	p.Trp557_Glu561del	p.W557_E561del	ENST00000288135	NM_000222.2	556	cAGTGGAAGGTTGTTGag/cag																																																																														
KIT	0	MSKCC	GRCh37	4	55599341	55599341	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004760-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			428	393	487	0	ENST00000288135.5:c.2467T>G	p.Tyr823Asp	p.Y823D	ENST00000288135	NM_000222.2	823	Tat/Gat																																																																														
JAK1	0	MSKCC	GRCh37	1	65349059	65349059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	286	260	15	ENST00000342505.4:c.106G>A	p.Val36Met	p.V36M	ENST00000342505	NM_002227.2	36	Gtg/Atg																																																																														
KIT	0	MSKCC	GRCh37	4	55593589	55593597	+	inframe_deletion	In_Frame_Del	DEL	TGTATGAAG	TGTATGAAG	-			P-0004776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	228	340	0	ENST00000288135.5:c.1656_1664del	p.Met552_Val555delinsIle	p.M552_V555delinsI	ENST00000288135	NM_000222.2	552	aTGTATGAAGta/ata																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	113	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	397	338	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0004786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	130	258	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
TET2	54790	MSKCC	GRCh37	4	106156747	106156747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs572712965		P-0004786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	181	382	2	ENST00000380013.4:c.1648C>T	p.Arg550Ter	p.R550*	ENST00000380013	NM_001127208.2	550	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575117	48575117	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	45	376	0	ENST00000342988.3:c.311T>A	p.Leu104His	p.L104H	ENST00000342988	NM_005359.5	104	cTt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112175182	112175198	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGCTAATACCCTGC	TTCTGCTAATACCCTGC	G			P-0004786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	111	190	0	ENST00000257430.4:c.3891_3907delinsG	p.Asp1297GlufsTer3	p.D1297Efs*3	ENST00000257430	NM_000038.5	1297	gaTTCTGCTAATACCCTGCaa/gaGaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	125	508	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	124	398	0	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	116	497	1	ENST00000262160.6:c.1391C>A	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tAa																																																																														
SOX2	0	MSKCC	GRCh37	3	181431010	181431010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	145	430	1	ENST00000325404.1:c.862G>A	p.Ala288Thr	p.A288T	ENST00000325404	NM_003106.3	288	Gcc/Acc																																																																														
KIT	0	MSKCC	GRCh37	4	55569926	55569926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	110	461	1	ENST00000288135.5:c.793G>A	p.Gly265Ser	p.G265S	ENST00000288135	NM_000222.2	265	Ggt/Agt																																																																														
MLL2	0	MSKCC	GRCh37	12	49446455	49446455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	141	365	0	ENST00000301067.7:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000301067	NM_003482.3	384	Gag/Aag																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482870	67482870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	232	354	0	ENST00000327367.4:c.1274C>T	p.Ser425Phe	p.S425F	ENST00000327367	NM_005902.3	425	tCt/tTt																																																																														
CDH1	0	MSKCC	GRCh37	16	68844127	68844127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	197	608	1	ENST00000261769.5:c.715G>A	p.Gly239Arg	p.G239R	ENST00000261769	NM_004360.3	239	Ggg/Agg																																																																														
NF1	0	MSKCC	GRCh37	17	29508445	29508445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	152	494	0	ENST00000358273.4:c.592G>A	p.Ala198Thr	p.A198T	ENST00000358273	NM_001042492.2	198	Gca/Aca																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790171	40790171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	81	257	0	ENST00000373198.4:c.2560C>T	p.Arg854Cys	p.R854C	ENST00000373198	NM_133170.3	854	Cgc/Tgc																																																																														
AR	0	MSKCC	GRCh37	X	66863244	66863244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	174	404	0	ENST00000374690.3:c.1763C>G	p.Ala588Gly	p.A588G	ENST00000374690	NM_000044.3	588	gCt/gGt																																																																														
ATRX	0	MSKCC	GRCh37	X	76874362	76874362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	333	612	0	ENST00000373344.5:c.5360G>T	p.Gly1787Val	p.G1787V	ENST00000373344	NM_000489.3	1787	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	195	261	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78681708	78681708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	201	303	2	ENST00000306801.3:c.416G>A	p.Arg139His	p.R139H	ENST00000306801	NM_020761.2	139	cGc/cAc																																																																														
ATM	0	MSKCC	GRCh37	11	108218045	108218045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	95	245	0	ENST00000278616.4:c.8624A>G	p.Asn2875Ser	p.N2875S	ENST00000278616	NM_000051.3	2875	aAt/aGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0004847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	511	392	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0004847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	492	318	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123769	11123769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	71	350	0	ENST00000344626.4:c.2419C>T	p.Leu807Phe	p.L807F	ENST00000344626	NM_003072.3	807	Ctc/Ttc																																																																														
AR	0	MSKCC	GRCh37	X	66863126	66863128	+	missense_variant	Missense_Mutation	ONP	CCC	CCC	GCT			P-0004847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1292	85	534	0	ENST00000374690.3:c.1645_1647delinsGCT	p.Pro549Ala	p.P549A	ENST00000374690	NM_000044.3	549	CCC/GCT																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120484148	120484148	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004858-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			470	110	561	0	ENST00000256646.2:c.2981+1G>T		p.X994_splice	ENST00000256646	NM_024408.3	994																																																																															
ETV1	0	MSKCC	GRCh37	7	14028655	14028655	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004858-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			653	113	684	1	ENST00000405192.2:c.23A>T	p.Gln8Leu	p.Q8L	ENST00000405192	NM_001163147.1	8	cAa/cTa																																																																														
RAD21	0	MSKCC	GRCh37	8	117868419	117868419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004858-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			843	319	701	0	ENST00000297338.2:c.923C>T	p.Pro308Leu	p.P308L	ENST00000297338	NM_006265.2	308	cCt/cTt																																																																														
GATA3	0	MSKCC	GRCh37	10	8100358	8100358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004858-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			737	343	938	0	ENST00000346208.3:c.332C>A	p.Pro111His	p.P111H	ENST00000346208		111	cCc/cAc																																																																														
STK11	0	MSKCC	GRCh37	19	1220699	1220699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004858-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			449	269	678	0	ENST00000326873.7:c.717G>T	p.Trp239Cys	p.W239C	ENST00000326873	NM_000455.4	239	tgG/tgT																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610321	10610321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004858-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			408	311	712	1	ENST00000171111.5:c.389C>T	p.Pro130Leu	p.P130L	ENST00000171111	NM_203500.1	130	cCc/cTc																																																																														
IGF1	0	MSKCC	GRCh37	12	102811726	102811726	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004858-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			986	211	919	1	ENST00000307046.8:c.458del	p.Pro153GlnfsTer49	p.P153Qfs*49	ENST00000307046	NM_001111285.1	153	cCa/ca																																																																														
ATM	0	MSKCC	GRCh37	11	108165746	108165751	+	inframe_deletion	In_Frame_Del	DEL	ACATAA	ACATAA	-			P-0004858-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			624	252	691	1	ENST00000278616.4:c.4870_4875del	p.His1624_Lys1625del	p.H1624_K1625del	ENST00000278616	NM_000051.3	1623	ctACATAAa/cta																																																																														
BTK	0	MSKCC	GRCh37	X	100613657	100613657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004858-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			877	169	680	0	ENST00000308731.7:c.922G>T	p.Asp308Tyr	p.D308Y	ENST00000308731	NM_000061.2	308	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	218	330	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	145	240	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212488694	212488694	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	239	362	0	ENST00000342788.4:c.2155A>C	p.Lys719Gln	p.K719Q	ENST00000342788	NM_005235.2	719	Aag/Cag																																																																														
FAT1	0	MSKCC	GRCh37	4	187558023	187558023	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	173	228	0	ENST00000441802.2:c.3688A>T	p.Arg1230Ter	p.R1230*	ENST00000441802	NM_005245.3	1230	Aga/Tga																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56174910	56174910	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	243	322	0	ENST00000399503.3:c.2069A>T	p.Lys690Ile	p.K690I	ENST00000399503	NM_005921.1	690	aAa/aTa																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056210	26056210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	234	360	0	ENST00000343677.2:c.447G>C	p.Lys149Asn	p.K149N	ENST00000343677	NM_005319.3	149	aaG/aaC																																																																														
ETV1	0	MSKCC	GRCh37	7	13978792	13978792	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	158	409	0	ENST00000405192.2:c.315A>C	p.Gln105His	p.Q105H	ENST00000405192	NM_001163147.1	105	caA/caC																																																																														
PAX5	0	MSKCC	GRCh37	9	37034015	37034015	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	240	329	1	ENST00000358127.4:c.14A>C	p.Lys5Thr	p.K5T	ENST00000358127	NM_001280556.1	5	aAa/aCa																																																																														
POLE	0	MSKCC	GRCh37	12	133226031	133226031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	192	363	0	ENST00000320574.5:c.3866G>T	p.Arg1289Leu	p.R1289L	ENST00000320574	NM_006231.2	1289	cGc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	308	438	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PAK7	0	MSKCC	GRCh37	20	9560844	9560844	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	290	388	0	ENST00000353224.5:c.938A>T	p.Tyr313Phe	p.Y313F	ENST00000353224	NM_177990.2	313	tAc/tTc																																																																														
AMER1	0	MSKCC	GRCh37	X	63410913	63410913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	326	293	0	ENST00000330258.3:c.2254G>T	p.Glu752Ter	p.E752*	ENST00000330258	NM_152424.3	752	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	268	466	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
KLF4	0	MSKCC	GRCh37	9	110249960	110249960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	116	213	0	ENST00000374672.4:c.715G>T	p.Gly239Cys	p.G239C	ENST00000374672	NM_004235.4	239	Ggc/Tgc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	89	394	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	102	467	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
INPP4B	0	MSKCC	GRCh37	4	142949972	142949972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	71	476	0	ENST00000262992.4:c.2738G>A	p.Arg913Lys	p.R913K	ENST00000262992	NM_001101669.1	913	aGa/aAa																																																																														
TERT	0	MSKCC	GRCh37	5	1294022	1294022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	74	658	0	ENST00000310581.5:c.979G>A	p.Glu327Lys	p.E327K	ENST00000310581	NM_198253.2	327	Gag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32187456	32187456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	38	545	0	ENST00000375023.3:c.1423G>A	p.Asp475Asn	p.D475N	ENST00000375023	NM_004557.3	475	Gat/Aat																																																																														
TET1	0	MSKCC	GRCh37	10	70406731	70406731	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	85	326	0	ENST00000373644.4:c.4245A>T	p.Lys1415Asn	p.K1415N	ENST00000373644	NM_030625.2	1415	aaA/aaT																																																																														
RARA	0	MSKCC	GRCh37	17	38512345	38512345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	69	362	0	ENST00000254066.5:c.1256G>T	p.Gly419Val	p.G419V	ENST00000254066	NM_000964.3	419	gGc/gTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561034	9561034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	29	400	1	ENST00000353224.5:c.748C>A	p.Leu250Met	p.L250M	ENST00000353224	NM_177990.2	250	Ctg/Atg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790177	40790177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	46	182	0	ENST00000373198.4:c.2554G>T	p.Gly852Cys	p.G852C	ENST00000373198	NM_133170.3	852	Ggc/Tgc																																																																														
STK11	0	MSKCC	GRCh37	19	1220469	1220469	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	73	531	0	ENST00000326873.7:c.563del	p.Gly188AlafsTer99	p.G188Afs*99	ENST00000326873	NM_000455.4	188	Ggc/gc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	283	272	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176132099	176132099	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	114	301	0	ENST00000367669.3:c.668A>C	p.Gln223Pro	p.Q223P	ENST00000367669	NM_022457.5	223	cAa/cCa																																																																														
MST1	0	MSKCC	GRCh37	3	49722925	49722925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	41	252	0	ENST00000449682.2:c.1402C>T	p.Pro468Ser	p.P468S	ENST00000449682	NM_020998.3	468	Cca/Tca																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480412	89480412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	138	301	1	ENST00000336596.2:c.2249G>A	p.Arg750Gln	p.R750Q	ENST00000336596	NM_005233.5	750	cGg/cAg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120339	94120339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	380	388	1	ENST00000369303.4:c.712G>A	p.Ala238Thr	p.A238T	ENST00000369303	NM_004440.3	238	Gca/Aca																																																																														
NBN	0	MSKCC	GRCh37	8	90955489	90955489	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	220	231	2	ENST00000265433.3:c.2176G>T	p.Glu726Ter	p.E726*	ENST00000265433	NM_002485.4	726	Gaa/Taa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486269	8486269	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	93	262	0	ENST00000356435.5:c.2548T>C	p.Phe850Leu	p.F850L	ENST00000356435		850	Ttt/Ctt																																																																														
PAX5	0	MSKCC	GRCh37	9	36966598	36966598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	245	423	0	ENST00000358127.4:c.728G>T	p.Arg243Met	p.R243M	ENST00000358127	NM_001280556.1	243	aGg/aTg																																																																														
FLT1	0	MSKCC	GRCh37	13	28877345	28877345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	89	207	0	ENST00000282397.4:c.3976G>C	p.Asp1326His	p.D1326H	ENST00000282397	NM_002019.4	1326	Gac/Cac																																																																														
IRS2	0	MSKCC	GRCh37	13	110437727	110437727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	136	364	0	ENST00000375856.3:c.674C>A	p.Thr225Asn	p.T225N	ENST00000375856	NM_003749.2	225	aCc/aAc																																																																														
GNA11	0	MSKCC	GRCh37	19	3113332	3113332	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	234	510	0	ENST00000078429.4:c.326A>G	p.Asn109Ser	p.N109S	ENST00000078429	NM_002067.2	109	aAt/aGt																																																																														
STK11	0	MSKCC	GRCh37	19	1207091	1207091	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	271	496	0	ENST00000326873.7:c.179del	p.Tyr60SerfsTer4	p.Y60Sfs*4	ENST00000326873	NM_000455.4	60	tAc/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	409	420	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RASA1	0	MSKCC	GRCh37	5	86564364	86564365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	131	472	2	ENST00000274376.6:c.97dup	p.Val33GlyfsTer79	p.V33Gfs*79	ENST00000274376	NM_002890.2	32	-/G																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	241	317	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	28	225	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	16	204	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PARK2	0	MSKCC	GRCh37	6	161807896	161807896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	100	391	0	ENST00000366898.1:c.1097G>A	p.Arg366Gln	p.R366Q	ENST00000366898	NM_004562.2	366	cGg/cAg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925334	114925334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	528	587	3	ENST00000543371.1:c.1412G>A	p.Arg471His	p.R471H	ENST00000543371	NM_001198531.1	471	cGc/cAc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3790422	3790422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	261	390	1	ENST00000262367.5:c.4111G>T	p.Val1371Phe	p.V1371F	ENST00000262367	NM_004380.2	1371	Gtc/Ttc																																																																														
APC	0	MSKCC	GRCh37	5	112175481	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	271	289	0	ENST00000257430.4:c.4190del	p.Glu1397GlyfsTer18	p.E1397Gfs*18	ENST00000257430	NM_000038.5	1397	gAg/gg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099888	27099889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	107	348	0	ENST00000324856.7:c.3770dup	p.Asp1258Ter	p.D1258*	ENST00000324856	NM_006015.4	1256	atg/atGg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066710	94066710	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004949-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			939	67	389	0	ENST00000369303.4:c.1049A>G	p.Glu350Gly	p.E350G	ENST00000369303	NM_004440.3	350	gAa/gGa																																																																														
BRD4	0	MSKCC	GRCh37	19	15365022	15365022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004949-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			523	153	257	0	ENST00000263377.2:c.2099C>A	p.Ser700Tyr	p.S700Y	ENST00000263377	NM_058243.2	700	tCc/tAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115955	8115956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004949-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			433	129	123	0	ENST00000346208.3:c.1305dupC	p.Ser436LeufsTer71	p.S436Lfs*71	ENST00000346208		434	cac/caCc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	14	214	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	16	62	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CDH1	0	MSKCC	GRCh37	16	68853184	68853185	+	stop_gained,frameshift_variant,splice_region_variant	Nonsense_Mutation	INS	-	-	A			P-0004951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	64	137	0	ENST00000261769.5:c.1568dupA	p.Tyr523Ter	p.Y523*	ENST00000261769	NM_004360.3	523	tat/tAat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	42	392	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	8	261	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
STK11	0	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	50	395	0	ENST00000326873.7:c.465-1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
HGF	0	MSKCC	GRCh37	7	81374438	81374438	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	26	373	0	ENST00000222390.5:c.626-2A>T		p.X209_splice	ENST00000222390	NM_000601.4	209																																																																															
EPHB1	0	MSKCC	GRCh37	3	134851646	134851646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	97	448	0	ENST00000398015.3:c.1052G>A	p.Arg351Gln	p.R351Q	ENST00000398015	NM_004441.4	351	cGg/cAg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356240	66356240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	32	350	0	ENST00000273854.3:c.1257C>G	p.Ser419Arg	p.S419R	ENST00000273854	NM_004439.5	419	agC/agG																																																																														
FLT1	0	MSKCC	GRCh37	13	28877471	28877471	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	31	281	0	ENST00000282397.4:c.3850C>A	p.Leu1284Met	p.L1284M	ENST00000282397	NM_002019.4	1284	Ctg/Atg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226547	2226547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	46	424	0	ENST00000398665.3:c.4027G>A	p.Glu1343Lys	p.E1343K	ENST00000398665	NM_032482.2	1343	Gag/Aag																																																																														
RBM10	0	MSKCC	GRCh37	X	47039636	47039636	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	59	500	0	ENST00000329236.7:c.854T>C	p.Leu285Pro	p.L285P	ENST00000329236	NM_001204466.1	285	cTg/cCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	10	307	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7579342	7579515	+	inframe_deletion	In_Frame_Del	DEL	ATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGG	ATGCAAGAAGCCCAGACGGAAACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCTGGTGCAGGGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGG	-			P-0005009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	90	333	0	ENST00000269305.4:c.172_345del	p.Pro58_His115del	p.P58_H115del	ENST00000269305	NM_001126112.2	58	CCAGGTCCAGATGAAGCTCCCAGAATGCCAGAGGCTGCTCCCCCCGTGGCCCCTGCACCAGCAGCTCCTACACCGGCGGCCCCTGCACCAGCCCCCTCCTGGCCCCTGTCATCTTCTGTCCCTTCCCAGAAAACCTACCAGGGCAGCTACGGTTTCCGTCTGGGCTTCTTGCAT/-																																																																														
ATRX	0	MSKCC	GRCh37	X	76907621	76907621	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	64	333	0	ENST00000373344.5:c.4540C>T	p.Arg1514Ter	p.R1514*	ENST00000373344	NM_000489.3	1514	Cga/Tga																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944259	81944259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	82	356	1	ENST00000359376.3:c.1868G>A	p.Arg623His	p.R623H	ENST00000359376	NM_002661.3	623	cGc/cAc																																																																														
CDH1	0	MSKCC	GRCh37	16	68863588	68863603	+	frameshift_variant	Frame_Shift_Del	DEL	TGGACGCTCGGCCTGA	TGGACGCTCGGCCTGA	-			P-0005015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	79	262	0	ENST00000261769.5:c.2327_2342del	p.Leu776GlnfsTer2	p.L776Qfs*2	ENST00000261769	NM_004360.3	776	cTGGACGCTCGGCCTGAa/ca																																																																														
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0005025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	152	378	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	330	537	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	85	288	1	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga																																																																														
TP63	0	MSKCC	GRCh37	3	189582168	189582168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	151	495	0	ENST00000264731.3:c.727C>T	p.Arg243Trp	p.R243W	ENST00000264731	NM_003722.4	243	Cgg/Tgg																																																																														
LATS2	0	MSKCC	GRCh37	13	21549149	21549149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1524	90	623	2	ENST00000382592.4:c.3127C>T	p.Arg1043Ter	p.R1043*	ENST00000382592	NM_014572.2	1043	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153250856	153250858	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0005025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	132	544	0	ENST00000281708.4:c.1202_1204delACA	p.Asn401del	p.N401del	ENST00000281708	NM_033632.3	401	aACAct/act																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0005029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	595	786	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	416	553	1	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	434	565	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	128	343	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	221	492	0	ENST00000269305.4:c.857A>T	p.Glu286Val	p.E286V	ENST00000269305	NM_001126112.2	286	gAa/gTa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157525044	157525044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	159	613	1	ENST00000346085.5:c.4939C>A	p.Leu1647Ile	p.L1647I	ENST00000346085	NM_020732.3	1647	Ctt/Att																																																																														
DDR2	0	MSKCC	GRCh37	1	162729700	162729700	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	190	561	0	ENST00000367921.3:c.786G>C	p.Glu262Asp	p.E262D	ENST00000367921	NM_006182.2	262	gaG/gaC																																																																														
KDR	0	MSKCC	GRCh37	4	55984928	55984928	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	101	470	0	ENST00000263923.4:c.201G>C	p.Gln67His	p.Q67H	ENST00000263923	NM_002253.2	67	caG/caC																																																																														
MLL	0	MSKCC	GRCh37	11	118375572	118375572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	32	453	1	ENST00000534358.1:c.8965G>C	p.Glu2989Gln	p.E2989Q	ENST00000534358	NM_005933.3	2989	Gaa/Caa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44732832	44732832	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1236	142	431	0	ENST00000377967.4:c.35C>G	p.Ala12Gly	p.A12G	ENST00000377967	NM_021140.2	12	gCc/gGc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061188	38061199	+	inframe_deletion	In_Frame_Del	DEL	CTTGAAGCGCTT	CTTGAAGCGCTT	-			P-0005032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	126	290	0	ENST00000250448.2:c.790_801del	p.Lys264_Lys267del	p.K264_K267del	ENST00000250448	NM_004496.3	264	AAGCGCTTCAAG/-																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928083	178928105	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTGCTGAACCCTATTGGTGTT	ATTTGCTGAACCCTATTGGTGTT	-			P-0005032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	62	418	0	ENST00000263967.3:c.1362_1384del	p.Leu455TrpfsTer6	p.L455Wfs*6	ENST00000263967	NM_006218.2	454	gATTTGCTGAACCCTATTGGTGTT/g																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928076	178928077	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	C			P-0005032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	67	425	0	ENST00000263967.3:c.1354_1355delinsC	p.Leu452GlnfsTer5	p.L452Qfs*5	ENST00000263967	NM_006218.2	452	TTa/Ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	123	421	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	54	353	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023988	27023988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	52	194	0	ENST00000324856.7:c.1094G>A	p.Gly365Glu	p.G365E	ENST00000324856	NM_006015.4	365	gGg/gAg																																																																														
AKT3	0	MSKCC	GRCh37	1	243736334	243736334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	113	627	0	ENST00000263826.5:c.713C>T	p.Ser238Leu	p.S238L	ENST00000263826	NM_005465.4	238	tCg/tTg																																																																														
NSD1	0	MSKCC	GRCh37	5	176637727	176637727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	82	541	0	ENST00000439151.2:c.2327C>G	p.Ala776Gly	p.A776G	ENST00000439151	NM_022455.4	776	gCt/gGt																																																																														
JAK2	0	MSKCC	GRCh37	9	5029783	5029783	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	89	409	0	ENST00000381652.3:c.227G>C	p.Gly76Ala	p.G76A	ENST00000381652	NM_004972.3	76	gGt/gCt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584708	48584708	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	126	539	0	ENST00000342988.3:c.788-2A>T		p.X263_splice	ENST00000342988	NM_005359.5	263																																																																															
DICER1	0	MSKCC	GRCh37	14	95570009	95570009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	132	658	0	ENST00000343455.3:c.3724T>C	p.Tyr1242His	p.Y1242H	ENST00000343455	NM_177438.2	1242	Tac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	26	240	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0005048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	97	554	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
MDC1	0	MSKCC	GRCh37	6	30671739	30671739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	191	636	1	ENST00000376406.3:c.5221C>T	p.Pro1741Ser	p.P1741S	ENST00000376406	NM_014641.2	1741	Cct/Tct																																																																														
MGA	0	MSKCC	GRCh37	15	42005558	42005558	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	67	862	0	ENST00000219905.7:c.3297del	p.Gln1100ArgfsTer33	p.Q1100Rfs*33	ENST00000219905	NM_001164273.1	1098	caT/ca																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0005085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1167	306	440	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0005085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1383	129	379	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	95	166	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1293661	1293661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	174	329	0	ENST00000310581.5:c.1340G>A	p.Arg447His	p.R447H	ENST00000310581	NM_198253.2	447	cGc/cAc																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	176	237	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288843	15288843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	96	150	0	ENST00000263388.2:c.3896C>T	p.Pro1299Leu	p.P1299L	ENST00000263388	NM_000435.2	1299	cCg/cTg																																																																														
BRD4	0	MSKCC	GRCh37	19	15366243	15366243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1786	127	539	1	ENST00000263377.2:c.1912C>A	p.Gln638Lys	p.Q638K	ENST00000263377	NM_058243.2	638	Cag/Aag																																																																														
CIC	0	MSKCC	GRCh37	19	42794968	42794968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	107	361	0	ENST00000575354.2:c.2048C>T	p.Pro683Leu	p.P683L	ENST00000575354	NM_015125.3	683	cCt/cTt																																																																														
APC	0	MSKCC	GRCh37	5	112173502	112173502	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	274	509	0	ENST00000257430.4:c.2211C>A	p.Tyr737Ter	p.Y737*	ENST00000257430	NM_000038.5	737	taC/taA																																																																														
PARK2	0	MSKCC	GRCh37	6	162475154	162475154	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	402	702	0	ENST00000366898.1:c.587G>C	p.Cys196Ser	p.C196S	ENST00000366898	NM_004562.2	196	tGc/tCc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89352567	89352599	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCCGTACCGCAGCAGCAGCTTCACCACCTACA	CTCCGTACCGCAGCAGCAGCTTCACCACCTACA	-			P-0005091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	76	553	0	ENST00000301030.4:c.745-5_772del		p.X249_splice	ENST00000301030	NM_001256183.1	249																																																																															
TP53	0	MSKCC	GRCh37	17	7578467	7578468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCGGGC			P-0005091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	609	515	2	ENST00000269305.4:c.456_462dup	p.Thr155AlafsTer28	p.T155Afs*28	ENST00000269305	NM_001126112.2	154	-/GCCCGGC																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910664	32910666	+	missense_variant	Missense_Mutation	ONP	AAA	AAA	TAT			P-0005091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2955	421	905	3	ENST00000380152.3:c.2172_2174delinsTAT	p.Lys724_Lys725delinsAsnIle	p.K724_K725delinsNI	ENST00000380152		724	aaAAAa/aaTATa																																																																														
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	121	595	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	296	941	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
DDR2	0	MSKCC	GRCh37	1	162737028	162737028	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	36	596	2	ENST00000367921.3:c.1172T>C	p.Leu391Pro	p.L391P	ENST00000367921	NM_006182.2	391	cTt/cCt																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664726	138664726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	37	82	0	ENST00000330315.3:c.839C>T	p.Pro280Leu	p.P280L	ENST00000330315	NM_023067.3	280	cCg/cTg																																																																														
RET	0	MSKCC	GRCh37	10	43622039	43622039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	159	602	0	ENST00000355710.3:c.3056C>T	p.Ala1019Val	p.A1019V	ENST00000355710	NM_020975.4	1019	gCg/gTg																																																																														
PPM1D	0	MSKCC	GRCh37	17	58734038	58734038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	162	890	0	ENST00000305921.3:c.1096G>A	p.Asp366Asn	p.D366N	ENST00000305921	NM_003620.3	366	Gat/Aat																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575080	48575080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	236	609	0	ENST00000342988.3:c.274C>T	p.His92Tyr	p.H92Y	ENST00000342988	NM_005359.5	92	Cat/Tat																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31376726	31376726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	56	682	2	ENST00000328111.2:c.721G>A	p.Ala241Thr	p.A241T	ENST00000328111	NM_006892.3	241	Gcc/Acc																																																																														
AR	0	MSKCC	GRCh37	X	66766300	66766300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	16	220	0	ENST00000374690.3:c.1312C>T	p.Leu438Phe	p.L438F	ENST00000374690	NM_000044.3	438	Ctc/Ttc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0005116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	58	494	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
LATS1	0	MSKCC	GRCh37	6	150005263	150005263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	53	628	0	ENST00000253339.5:c.962G>C	p.Ser321Thr	p.S321T	ENST00000253339		321	aGt/aCt																																																																														
JAK3	0	MSKCC	GRCh37	19	17950308	17950319	+	inframe_deletion	In_Frame_Del	DEL	GGAAGTGAGGGT	GGAAGTGAGGGT	-			P-0005149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	512	224	0	ENST00000458235.1:c.1408_1419del	p.Thr470_Ser473del	p.T470_S473del	ENST00000458235	NM_000215.3	470	ACCCTCACTTCC/-																																																																														
TP53	0	MSKCC	GRCh37	17	7577554	7577555	+	missense_variant	Missense_Mutation	DNP	TG	TG	AC			P-0005149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	1700	337	0	ENST00000269305.4:c.726_727delinsGT	p.Cys242_Met243delinsTrpLeu	p.C242_M243delinsWL	ENST00000269305	NM_001126112.2	242	tgCAtg/tgGTtg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9783205	9783205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	102	185	1	ENST00000377346.4:c.2449C>T	p.Pro817Ser	p.P817S	ENST00000377346	NM_005026.3	817	Ccc/Tcc																																																																														
MTOR	0	MSKCC	GRCh37	1	11187129	11187129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	167	368	0	ENST00000361445.4:c.6289C>T	p.Leu2097Phe	p.L2097F	ENST00000361445	NM_004958.3	2097	Ctc/Ttc																																																																														
SPEN	0	MSKCC	GRCh37	1	16255503	16255503	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	109	253	0	ENST00000375759.3:c.2768A>G	p.Glu923Gly	p.E923G	ENST00000375759	NM_015001.2	923	gAg/gGg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023220	27023220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	29	106	0	ENST00000324856.7:c.326C>A	p.Pro109His	p.P109H	ENST00000324856	NM_006015.4	109	cCt/cAt																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430751	78430751	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	149	223	0	ENST00000370768.2:c.636+2T>C		p.X212_splice	ENST00000370768	NM_003902.3	212																																																																															
RFWD2	0	MSKCC	GRCh37	1	176145100	176145100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	120	299	0	ENST00000367669.3:c.511C>A	p.Pro171Thr	p.P171T	ENST00000367669	NM_022457.5	171	Ccc/Acc																																																																														
MSH2	0	MSKCC	GRCh37	2	47709969	47709969	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	170	386	0	ENST00000233146.2:c.2686T>A	p.Phe896Ile	p.F896I	ENST00000233146	NM_000251.2	896	Ttt/Att																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248423	212248423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	136	257	0	ENST00000342788.4:c.3844C>T	p.Pro1282Ser	p.P1282S	ENST00000342788	NM_005235.2	1282	Cct/Tct																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248460	212248460	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	292	283	0	ENST00000342788.4:c.3807A>T	p.Lys1269Asn	p.K1269N	ENST00000342788	NM_005235.2	1269	aaA/aaT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212293159	212293159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	103	247	0	ENST00000342788.4:c.2693C>T	p.Thr898Ile	p.T898I	ENST00000342788	NM_005235.2	898	aCc/aTc																																																																														
BARD1	0	MSKCC	GRCh37	2	215645898	215645898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	226	415	0	ENST00000260947.4:c.700G>A	p.Glu234Lys	p.E234K	ENST00000260947	NM_000465.2	234	Gaa/Aaa																																																																														
VHL	0	MSKCC	GRCh37	3	10183613	10183613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	110	368	0	ENST00000256474.2:c.82G>A	p.Asp28Asn	p.D28N	ENST00000256474	NM_000551.3	28	Gac/Aac																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729980	30729980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	102	237	0	ENST00000359013.4:c.1576C>T	p.Pro526Ser	p.P526S	ENST00000359013	NM_001024847.2	526	Ccc/Tcc																																																																														
MLH1	0	MSKCC	GRCh37	3	37090475	37090475	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	232	222	0	ENST00000231790.2:c.2070C>A	p.Tyr690Ter	p.Y690*	ENST00000231790	NM_000249.3	690	taC/taA																																																																														
MST1R	0	MSKCC	GRCh37	3	49935641	49935641	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191131637		P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	121	238	0	ENST00000296474.3:c.1723C>T	p.His575Tyr	p.H575Y	ENST00000296474	NM_002447.2	575	Cac/Tac																																																																														
PBRM1	0	MSKCC	GRCh37	3	52702606	52702606	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	244	316	0	ENST00000394830.3:c.292C>T	p.Gln98Ter	p.Q98*	ENST00000394830	NM_018313.4	98	Caa/Taa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71021727	71021727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	131	319	0	ENST00000318789.4:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000318789	NM_032682.5	544	cGa/cAa																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138400874	138400874	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	169	325	0	ENST00000289153.2:c.2439T>A	p.Asp813Glu	p.D813E	ENST00000289153	NM_006219.2	813	gaT/gaA																																																																														
SOX2	0	MSKCC	GRCh37	3	181430901	181430901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	182	340	0	ENST00000325404.1:c.753C>G	p.Ser251Arg	p.S251R	ENST00000325404	NM_003106.3	251	agC/agG																																																																														
KDR	0	MSKCC	GRCh37	4	55984957	55984957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	110	250	0	ENST00000263923.4:c.172G>A	p.Asp58Asn	p.D58N	ENST00000263923	NM_002253.2	58	Gac/Aac																																																																														
TET2	0	MSKCC	GRCh37	4	106155457	106155457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	138	325	0	ENST00000380013.4:c.358G>A	p.Gly120Arg	p.G120R	ENST00000380013	NM_001127208.2	120	Gga/Aga																																																																														
TET2	0	MSKCC	GRCh37	4	106156349	106156349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	34	255	0	ENST00000380013.4:c.1250A>G	p.Gln417Arg	p.Q417R	ENST00000380013	NM_001127208.2	417	cAg/cGg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244298	153244298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	66	133	0	ENST00000281708.4:c.1859C>T	p.Pro620Leu	p.P620L	ENST00000281708	NM_033632.3	620	cCc/cTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187524113	187524113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	138	326	0	ENST00000441802.2:c.11426C>T	p.Pro3809Leu	p.P3809L	ENST00000441802	NM_005245.3	3809	cCc/cTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187530405	187530405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	371	335	0	ENST00000441802.2:c.10138G>A	p.Gly3380Arg	p.G3380R	ENST00000441802	NM_005245.3	3380	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	57	52	0				ENST00000310581	NM_198253.2																																																																																
APC	0	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	81	254	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																																																														
E2F3	0	MSKCC	GRCh37	6	20480137	20480137	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	121	247	0	ENST00000346618.3:c.454A>G	p.Thr152Ala	p.T152A	ENST00000346618	NM_001949.4	152	Acc/Gcc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652051	36652051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	143	319	0	ENST00000244741.5:c.173C>T	p.Pro58Leu	p.P58L	ENST00000244741	NM_000389.4	58	cCa/cTa																																																																														
VEGFA	0	MSKCC	GRCh37	6	43748509	43748509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1277	201	423	0	ENST00000523873.1:c.463C>T	p.Arg155Cys	p.R155C	ENST00000523873		155	Cgc/Tgc																																																																														
PRDM1	0	MSKCC	GRCh37	6	106547193	106547193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	47	106	0	ENST00000369096.4:c.430C>T	p.Leu144Phe	p.L144F	ENST00000369096	NM_001198.3	144	Ctt/Ttt																																																																														
FYN	0	MSKCC	GRCh37	6	112017597	112017597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	188	383	0	ENST00000368678.4:c.916G>A	p.Glu306Lys	p.E306K	ENST00000368678		306	Gaa/Aaa																																																																														
CARD11	0	MSKCC	GRCh37	7	2946429	2946429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	336	315	0	ENST00000396946.4:c.3308G>A	p.Cys1103Tyr	p.C1103Y	ENST00000396946	NM_032415.4	1103	tGc/tAc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467639	50467639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	97	218	0	ENST00000331340.3:c.874C>T	p.Pro292Ser	p.P292S	ENST00000331340	NM_006060.4	292	Ccc/Tcc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467933	50467933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	102	214	0	ENST00000331340.3:c.1168C>T	p.Pro390Ser	p.P390S	ENST00000331340	NM_006060.4	390	Ccg/Tcg																																																																														
SMO	0	MSKCC	GRCh37	7	128829248	128829248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	151	293	0	ENST00000249373.3:c.256G>A	p.Gly86Arg	p.G86R	ENST00000249373	NM_005631.4	86	Ggg/Agg																																																																														
SMO	0	MSKCC	GRCh37	7	128829293	128829293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	175	336	0	ENST00000249373.3:c.301G>A	p.Glu101Lys	p.E101K	ENST00000249373	NM_005631.4	101	Gaa/Aaa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	31	268	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737790	145737790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	121	180	0	ENST00000428558.2:c.3040C>T	p.His1014Tyr	p.H1014Y	ENST00000428558	NM_004260.3	1014	Cac/Tac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341130	8341130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	125	323	0	ENST00000356435.5:c.5086G>A	p.Gly1696Arg	p.G1696R	ENST00000356435		1696	Gga/Aga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341196	8341196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	105	308	0	ENST00000356435.5:c.5020C>T	p.Arg1674Cys	p.R1674C	ENST00000356435		1674	Cgc/Tgc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8517994	8517994	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	166	359	1	ENST00000356435.5:c.1397G>A	p.Trp466Ter	p.W466*	ENST00000356435		466	tGg/tAg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971058	21971058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	140	186	0	ENST00000361570.3:c.466C>T	p.Arg156Trp	p.R156W	ENST00000361570	NM_058195.3	156	Cgg/Tgg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971058	21971058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	140	186	0	ENST00000361570.3:c.466C>T	p.Arg156Trp	p.R156W	ENST00000361570	NM_058195.3	156	Cgg/Tgg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139417634	139417634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	112	226	0	ENST00000277541.6:c.410C>T	p.Ser137Leu	p.S137L	ENST00000277541	NM_017617.3	137	tCg/tTg																																																																														
GATA3	0	MSKCC	GRCh37	10	8100550	8100550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34363744		P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	130	236	0	ENST00000346208.3:c.524C>T	p.Ser175Leu	p.S175L	ENST00000346208		175	tCg/tTg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115769	8115769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	255	439	0	ENST00000346208.3:c.1115C>T	p.Ser372Phe	p.S372F	ENST00000346208		372	tCc/tTc																																																																														
RET	0	MSKCC	GRCh37	10	43615611	43615611	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	129	223	0	ENST00000355710.3:c.2690G>C	p.Arg897Pro	p.R897P	ENST00000355710	NM_020975.4	897	cGa/cCa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912171	114912171	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	337	396	0	ENST00000543371.1:c.1241A>G	p.Tyr414Cys	p.Y414C	ENST00000543371	NM_001198531.1	414	tAc/tGc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123243237	123243237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55774317		P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	164	451	0	ENST00000358487.5:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000358487	NM_000141.4	759	cGa/cAa																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67200434	67200434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	45	185	0	ENST00000312629.5:c.628C>A	p.Leu210Met	p.L210M	ENST00000312629	NM_003952.2	210	Ctg/Atg																																																																														
FGF3	0	MSKCC	GRCh37	11	69625149	69625149	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	107	233	0	ENST00000334134.2:c.644A>C	p.Gln215Pro	p.Q215P	ENST00000334134	NM_005247.2	215	cAg/cCg																																																																														
PGR	0	MSKCC	GRCh37	11	100999741	100999741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	151	383	0	ENST00000325455.5:c.61C>T	p.Pro21Ser	p.P21S	ENST00000325455	NM_001202474.3	21	Ccc/Tcc																																																																														
MLL	0	MSKCC	GRCh37	11	118375035	118375035	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	66	236	1	ENST00000534358.1:c.8428A>G	p.Ser2810Gly	p.S2810G	ENST00000534358	NM_005933.3	2810	Agc/Ggc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18716364	18716364	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	122	312	1	ENST00000266497.5:c.3711A>T	p.Lys1237Asn	p.K1237N	ENST00000266497		1237	aaA/aaT																																																																														
MLL2	0	MSKCC	GRCh37	12	49427405	49427405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	149	281	0	ENST00000301067.7:c.11083C>T	p.Pro3695Ser	p.P3695S	ENST00000301067	NM_003482.3	3695	Cct/Tct																																																																														
MLL2	0	MSKCC	GRCh37	12	49434618	49434618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	133	120	0	ENST00000301067.7:c.6935C>T	p.Ser2312Leu	p.S2312L	ENST00000301067	NM_003482.3	2312	tCa/tTa																																																																														
MLL2	0	MSKCC	GRCh37	12	49438733	49438733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	182	233	0	ENST00000301067.7:c.4757G>A	p.Arg1586His	p.R1586H	ENST00000301067	NM_003482.3	1586	cGc/cAc																																																																														
TBX3	0	MSKCC	GRCh37	12	115117381	115117381	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	45	316	0	ENST00000257566.3:c.793T>C	p.Tyr265His	p.Y265H	ENST00000257566	NM_016569.3	265	Tat/Cat																																																																														
LATS2	0	MSKCC	GRCh37	13	21562870	21562870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	132	239	0	ENST00000382592.4:c.1049C>T	p.Pro350Leu	p.P350L	ENST00000382592	NM_014572.2	350	cCc/cTc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32905069	32905069	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	83	153	0	ENST00000380152.3:c.695A>T	p.Tyr232Phe	p.Y232F	ENST00000380152		232	tAt/tTt																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134012	41134012	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	176	388	0	ENST00000379561.5:c.1616T>G	p.Leu539Arg	p.L539R	ENST00000379561	NM_002015.3	539	cTg/cGg																																																																														
RAD51B	0	MSKCC	GRCh37	14	68292197	68292197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	129	285	0	ENST00000487270.1:c.101C>T	p.Ser34Phe	p.S34F	ENST00000487270	NM_133509.3	34	tCc/tTc																																																																														
MGA	0	MSKCC	GRCh37	15	42028834	42028834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	231	497	0	ENST00000219905.7:c.4372C>T	p.Pro1458Ser	p.P1458S	ENST00000219905	NM_001164273.1	1458	Cct/Tct																																																																														
AXIN1	0	MSKCC	GRCh37	16	354392	354392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	146	299	0	ENST00000262320.3:c.1166C>T	p.Ala389Val	p.A389V	ENST00000262320	NM_003502.3	389	gCg/gTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3832856	3832856	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	126	216	0	ENST00000262367.5:c.1402A>T	p.Thr468Ser	p.T468S	ENST00000262367	NM_004380.2	468	Act/Tct																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858549	9858550	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	268	316	0	ENST00000330684.3:c.2851_2852delinsAA	p.Gly951Lys	p.G951K	ENST00000330684	NM_001134407.1	951	GGg/AAg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829113	72829113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	96	225	0	ENST00000268489.5:c.7468C>T	p.Pro2490Ser	p.P2490S	ENST00000268489	NM_006885.3	2490	Cca/Tca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993320	72993320	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	268	459	0	ENST00000268489.5:c.725A>C	p.Lys242Thr	p.K242T	ENST00000268489	NM_006885.3	242	aAg/aCg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72994016	72994016	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs12922687		P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	204	381	0	ENST00000268489.5:c.29C>T	p.Ser10Leu	p.S10L	ENST00000268489	NM_006885.3	10	tCg/tTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579395	7579395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	175	228	0	ENST00000269305.4:c.292C>T	p.Pro98Ser	p.P98S	ENST00000269305	NM_001126112.2	98	Cct/Tct																																																																														
STAT5B	0	MSKCC	GRCh37	17	40376811	40376811	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	212	539	0	ENST00000293328.3:c.361C>T	p.Arg121Ter	p.R121*	ENST00000293328	NM_012448.3	121	Cga/Tga																																																																														
PPM1D	0	MSKCC	GRCh37	17	58677945	58677945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	137	235	1	ENST00000305921.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000305921	NM_003620.3	57	gCc/gTc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58700905	58700905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	137	461	0	ENST00000305921.3:c.496G>A	p.Gly166Ser	p.G166S	ENST00000305921	NM_003620.3	166	Ggt/Agt																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732520	74732520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	57	246	0	ENST00000359995.5:c.389C>T	p.Ser130Phe	p.S130F	ENST00000359995	NM_001195427.1	130	tCc/tTc																																																																														
YES1	0	MSKCC	GRCh37	18	756697	756697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	133	410	0	ENST00000314574.4:c.131C>T	p.Ser44Leu	p.S44L	ENST00000314574	NM_005433.3	44	tCa/tTa																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216560	2216560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777525091		P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	132	296	0	ENST00000398665.3:c.2204C>T	p.Thr735Met	p.T735M	ENST00000398665	NM_032482.2	735	aCg/aTg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226845	2226845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	156	80	0	ENST00000398665.3:c.4325C>T	p.Pro1442Leu	p.P1442L	ENST00000398665	NM_032482.2	1442	cCc/cTc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4099309	4099309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	161	261	0	ENST00000262948.5:c.809C>T	p.Pro270Leu	p.P270L	ENST00000262948	NM_030662.3	270	cCc/cTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141529	11141529	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	131	245	0	ENST00000344626.4:c.3506A>T	p.Asp1169Val	p.D1169V	ENST00000344626	NM_003072.3	1169	gAc/gTc																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14629158	14629158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	53	316	0	ENST00000254322.2:c.4G>A	p.Gly2Ser	p.G2S	ENST00000254322	NM_006145.1	2	Ggt/Agt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271835	15271835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	31	71	0	ENST00000263388.2:c.6604G>A	p.Val2202Ile	p.V2202I	ENST00000263388	NM_000435.2	2202	Gtc/Atc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302627	15302627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	379	331	3	ENST00000263388.2:c.731G>A	p.Arg244Gln	p.R244Q	ENST00000263388	NM_000435.2	244	cGa/cAa																																																																														
JAK3	0	MSKCC	GRCh37	19	17942077	17942077	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	279	255	0	ENST00000458235.1:c.2938T>A	p.Tyr980Asn	p.Y980N	ENST00000458235	NM_000215.3	980	Tac/Aac																																																																														
MEF2B	0	MSKCC	GRCh37	19	19256668	19256668	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	35	132	0	ENST00000162023.5:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000162023		349	Gag/Tag																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257856	19257856	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	48	150	0	ENST00000162023.5:c.530C>G	p.Ala177Gly	p.A177G	ENST00000162023		177	gCc/gGc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257863	19257863	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	49	157	0	ENST00000162023.5:c.523C>A	p.Pro175Thr	p.P175T	ENST00000162023		175	Ccc/Acc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19258626	19258626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	54	283	1	ENST00000162023.5:c.274G>A	p.Gly92Ser	p.G92S	ENST00000162023		92	Ggc/Agc																																																																														
CD79A	0	MSKCC	GRCh37	19	42385026	42385026	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	171	353	1	ENST00000221972.3:c.660T>A	p.Asp220Glu	p.D220E	ENST00000221972	NM_021601.3	220	gaT/gaA																																																																														
POLD1	0	MSKCC	GRCh37	19	50910411	50910411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	198	364	0	ENST00000440232.2:c.1666G>A	p.Val556Ile	p.V556I	ENST00000440232	NM_002691.3	556	Gta/Ata																																																																														
PAK7	0	MSKCC	GRCh37	20	9546931	9546931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	88	212	0	ENST00000353224.5:c.1091C>T	p.Ser364Leu	p.S364L	ENST00000353224	NM_177990.2	364	tCg/tTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561340	9561340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	177	208	0	ENST00000353224.5:c.442G>A	p.Glu148Lys	p.E148K	ENST00000353224	NM_177990.2	148	Gag/Aag																																																																														
PAK7	0	MSKCC	GRCh37	20	9624936	9624936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	237	333	1	ENST00000353224.5:c.41C>T	p.Pro14Leu	p.P14L	ENST00000353224	NM_177990.2	14	cCg/cTg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31388692	31388692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	154	304	0	ENST00000328111.2:c.1957G>A	p.Asp653Asn	p.D653N	ENST00000328111	NM_006892.3	653	Gat/Aat																																																																														
TOP1	0	MSKCC	GRCh37	20	39745026	39745026	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	121	274	0	ENST00000361337.2:c.1816A>G	p.Thr606Ala	p.T606A	ENST00000361337	NM_003286.2	606	Aca/Gca																																																																														
AURKA	0	MSKCC	GRCh37	20	54961521	54961521	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	221	247	0	ENST00000312783.6:c.111A>C	p.Leu37Phe	p.L37F	ENST00000312783	NM_198436.1	37	ttA/ttC																																																																														
RUNX1	0	MSKCC	GRCh37	21	36206850	36206850	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	81	134	0	ENST00000300305.3:c.662T>C	p.Phe221Ser	p.F221S	ENST00000300305		221	tTt/tCt																																																																														
EP300	0	MSKCC	GRCh37	22	41536160	41536160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	129	245	0	ENST00000263253.7:c.1777C>T	p.Pro593Ser	p.P593S	ENST00000263253	NM_001429.3	593	Cct/Tct																																																																														
BCOR	0	MSKCC	GRCh37	X	39914743	39914743	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	143	182	0	ENST00000378444.4:c.4619A>G	p.Asn1540Ser	p.N1540S	ENST00000378444	NM_001123385.1	1540	aAc/aGc																																																																														
ATRX	0	MSKCC	GRCh37	X	76939504	76939504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	130	142	0	ENST00000373344.5:c.1244C>T	p.Ser415Phe	p.S415F	ENST00000373344	NM_000489.3	415	tCc/tTc																																																																														
STAG2	0	MSKCC	GRCh37	X	123182910	123182910	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	92	159	0	ENST00000218089.9:c.875T>C	p.Val292Ala	p.V292A	ENST00000218089	NM_001042749.1	292	gTg/gCg																																																																														
NF1	0	MSKCC	GRCh37	17	29657302	29657376	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTTTCTCCTAGGTCAGCTGCCTATAATCTTCTGTGTGCCTTAACTTGTACCTTTAATTTAAAAATCGAGGGCCA	GTTTTCTCCTAGGTCAGCTGCCTATAATCTTCTGTGTGCCTTAACTTGTACCTTTAATTTAAAAATCGAGGGCCA	-			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	86	170	0	ENST00000358273.4:c.5610-9_5675del		p.X1870_splice	ENST00000358273	NM_001042492.2	1870																																																																															
POLD1	0	MSKCC	GRCh37	19	50905055	50905055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	180	331	3	ENST00000440232.2:c.342delG	p.Pro116HisfsTer53	p.P116Hfs*53	ENST00000440232	NM_002691.3	113	Ggg/gg																																																																														
NF1	0	MSKCC	GRCh37	17	29663779	29663786	+	frameshift_variant	Frame_Shift_Del	DEL	AATTCCCT	AATTCCCT	-			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	290	288	0	ENST00000358273.4:c.6274_6281del	p.Asn2092Ter	p.N2092*	ENST00000358273	NM_001042492.2	2092	AATTCCCTt/t																																																																														
IGF1R	0	MSKCC	GRCh37	15	99451923	99451925	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0005159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	52	224	0	ENST00000268035.6:c.1259_1261del	p.Phe420del	p.F420del	ENST00000268035	NM_000875.3	419	tcCTTc/tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	93	417	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	96	444	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0005172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	71	354	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
SF3B1	0	MSKCC	GRCh37	2	198281581	198281581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139823279		P-0005172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	73	464	0	ENST00000335508.6:c.550G>A	p.Val184Ile	p.V184I	ENST00000335508	NM_012433.2	184	Gtc/Atc																																																																														
TBX3	0	MSKCC	GRCh37	12	115120860	115120860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	61	470	0	ENST00000257566.3:c.146A>G	p.Asn49Ser	p.N49S	ENST00000257566	NM_016569.3	49	aAc/aGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	99	291	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0005207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	105	205	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	157	405	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0005207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	115	301	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
DIS3	0	MSKCC	GRCh37	13	73354982	73354982	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0005207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	57	159	0	ENST00000377767.4:c.386+2T>G		p.X129_splice	ENST00000377767	NM_014953.3	129																																																																															
E2F3	0	MSKCC	GRCh37	6	20402825	20402839	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGGCAGCGGCG	GCGGCGGCAGCGGCG	-			P-0005207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	13	15	0	ENST00000346618.3:c.370_384del	p.Ser124_Gly128del	p.S124_G128del	ENST00000346618	NM_001949.4	121	cGCGGCGGCAGCGGCGgc/cgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	266	456	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	248	699	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	73	431	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
MLL2	0	MSKCC	GRCh37	12	49428627	49428627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	48	648	0	ENST00000301067.7:c.10323G>T	p.Gln3441His	p.Q3441H	ENST00000301067	NM_003482.3	3441	caG/caT																																																																														
APC	0	MSKCC	GRCh37	5	112173830	112173831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	125	470	0	ENST00000257430.4:c.2544dupA	p.Asp849ArgfsTer2	p.D849Rfs*2	ENST00000257430	NM_000038.5	847	gaa/gAaa																																																																														
AMER1	0	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	160	441	2	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
AKT3	0	MSKCC	GRCh37	1	243800935	243800935	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	81	503	0	ENST00000263826.5:c.539A>T	p.Lys180Met	p.K180M	ENST00000263826	NM_005465.4	180	aAg/aTg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99172265	99172265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	22	347	0	ENST00000074304.5:c.1831A>G	p.Thr611Ala	p.T611A	ENST00000074304	NM_001134224.1	611	Acc/Gcc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259459	89259459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	128	664	2	ENST00000336596.2:c.603G>T	p.Lys201Asn	p.K201N	ENST00000336596	NM_005233.5	201	aaG/aaT																																																																														
AXIN1	0	MSKCC	GRCh37	16	338153	338153	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	37	636	0	ENST00000262320.3:c.2558A>T	p.Lys853Met	p.K853M	ENST00000262320	NM_003502.3	853	aAg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	975	528	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	735	693	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	328	295	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																															
ARID1A	0	MSKCC	GRCh37	1	27094477	27094477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	164	299	0	ENST00000324856.7:c.3185G>A	p.Gly1062Asp	p.G1062D	ENST00000324856	NM_006015.4	1062	gGt/gAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927457	178927457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	990	508	4	ENST00000263967.3:c.1220G>T	p.Cys407Phe	p.C407F	ENST00000263967	NM_006218.2	407	tGc/tTc																																																																														
MLL3	0	MSKCC	GRCh37	7	151878748	151878748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	1599	427	1	ENST00000262189.6:c.6197G>A	p.Arg2066Gln	p.R2066Q	ENST00000262189	NM_170606.2	2066	cGa/cAa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15938210	15938210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	293	671	2	ENST00000268712.3:c.7004C>A	p.Ser2335Tyr	p.S2335Y	ENST00000268712	NM_006311.3	2335	tCt/tAt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115623	8115708	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTTGGTGTGCGAGAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGATTAACA	TTCTTGGTGTGCGAGAGCCTGTGCATTTCAGAGGCAGCAAAAAAGTAAAAAAAAAAAAAAAAAATTGATCTTTGTTTAGATTAACA	-			P-0005220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	228	105	2	ENST00000346208.3:c.1048-79_1054del		p.X350_splice	ENST00000346208		350																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	25	610	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	85	728	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	11	187	0	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	43	653	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	29	541	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																														
MITF	0	MSKCC	GRCh37	3	69928347	69928347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	33	572	1	ENST00000352241.4:c.167G>A	p.Arg56His	p.R56H	ENST00000352241	NM_198159.2	56	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	13	619	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KDR	0	MSKCC	GRCh37	4	55955112	55955112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	26	567	0	ENST00000263923.4:c.3433G>A	p.Gly1145Arg	p.G1145R	ENST00000263923	NM_002253.2	1145	Ggg/Agg																																																																														
BAP1	0	MSKCC	GRCh37	3	52442569	52442569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	25	446	0	ENST00000460680.1:c.176G>A	p.Arg59Gln	p.R59Q	ENST00000460680	NM_004656.3	59	cGg/cAg																																																																														
SYK	0	MSKCC	GRCh37	9	93606304	93606304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	58	617	0	ENST00000375746.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000375746	NM_001174167.1	42	Cgc/Tgc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9777676	9777676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	42	562	0	ENST00000377346.4:c.1012C>T	p.Arg338Trp	p.R338W	ENST00000377346	NM_005026.3	338	Cgg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16257509	16257509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	35	612	1	ENST00000375759.3:c.4774C>T	p.Arg1592Trp	p.R1592W	ENST00000375759	NM_015001.2	1592	Cgg/Tgg																																																																														
ALK	0	MSKCC	GRCh37	2	29474086	29474086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	31	497	0	ENST00000389048.3:c.2089A>G	p.Thr697Ala	p.T697A	ENST00000389048	NM_004304.4	697	Acc/Gcc																																																																														
MSH6	0	MSKCC	GRCh37	2	48023095	48023095	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	53	902	0	ENST00000234420.5:c.520A>T	p.Arg174Ter	p.R174*	ENST00000234420	NM_000179.2	174	Aga/Tga																																																																														
CASP8	0	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	36	615	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																																																														
CASP8	0	MSKCC	GRCh37	2	202151303	202151303	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	36	673	0	ENST00000358485.4:c.1603T>G	p.Phe535Val	p.F535V	ENST00000358485	NM_001080125.1	535	Ttc/Gtc																																																																														
KDR	0	MSKCC	GRCh37	4	55976872	55976872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	27	570	2	ENST00000263923.4:c.1040G>A	p.Arg347His	p.R347H	ENST00000263923	NM_002253.2	347	cGt/cAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187522536	187522536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	31	613	0	ENST00000441802.2:c.11527C>T	p.Arg3843Cys	p.R3843C	ENST00000441802	NM_005245.3	3843	Cgt/Tgt																																																																														
FAT1	0	MSKCC	GRCh37	4	187540379	187540379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	25	432	0	ENST00000441802.2:c.7361G>A	p.Arg2454Gln	p.R2454Q	ENST00000441802	NM_005245.3	2454	cGg/cAg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950532	38950532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	27	634	0	ENST00000357387.3:c.3418G>T	p.Asp1140Tyr	p.D1140Y	ENST00000357387	NM_152756.3	1140	Gat/Tat																																																																														
RICTOR	0	MSKCC	GRCh37	5	38962423	38962423	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	28	417	0	ENST00000357387.3:c.1709T>C	p.Leu570Ser	p.L570S	ENST00000357387	NM_152756.3	570	tTa/tCa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176518038	176518038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111435837		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	43	768	1	ENST00000292408.4:c.536C>T	p.Thr179Met	p.T179M	ENST00000292408	NM_213647.1	179	aCg/aTg																																																																														
FLT4	0	MSKCC	GRCh37	5	180046703	180046703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	45	580	2	ENST00000261937.6:c.2609G>A	p.Gly870Asp	p.G870D	ENST00000261937	NM_182925.4	870	gGc/gAc																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911072	29911072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	43	670	1	ENST00000376809.5:c.371G>A	p.Gly124Asp	p.G124D	ENST00000376809	NM_002116.7	124	gGc/gAc																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200266	138200266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	25	426	0	ENST00000237289.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000237289	NM_001270507.1	562	Cgt/Tgt																																																																														
LATS1	0	MSKCC	GRCh37	6	149997756	149997756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	29	578	0	ENST00000253339.5:c.2711G>A	p.Arg904Gln	p.R904Q	ENST00000253339		904	cGa/cAa																																																																														
CDK6	0	MSKCC	GRCh37	7	92247520	92247520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	26	507	1	ENST00000265734.4:c.700G>A	p.Val234Met	p.V234M	ENST00000265734	NM_001259.6	234	Gtg/Atg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970981	21970981	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	45	417	0	ENST00000304494.5:c.377T>C	p.Val126Ala	p.V126A	ENST00000304494	NM_000077.4	126	gTc/gCc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970981	21970981	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	45	417	0	ENST00000304494.5:c.377T>C	p.Val126Ala	p.V126A	ENST00000304494	NM_000077.4	126	gTc/gCc																																																																														
TSC1	0	MSKCC	GRCh37	9	135781193	135781193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	58	867	2	ENST00000298552.3:c.1772C>T	p.Pro591Leu	p.P591L	ENST00000298552	NM_001162426.1	591	cCg/cTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139417332	139417332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	40	300	2	ENST00000277541.6:c.712G>A	p.Asp238Asn	p.D238N	ENST00000277541	NM_017617.3	238	Gac/Aac																																																																														
GATA3	0	MSKCC	GRCh37	10	8106072	8106072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	22	470	0	ENST00000346208.3:c.892C>T	p.Arg298Trp	p.R298W	ENST00000346208		298	Cgg/Tgg																																																																														
RET	0	MSKCC	GRCh37	10	43607597	43607597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	64	657	1	ENST00000355710.3:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000355710	NM_020975.4	525	Cgg/Tgg																																																																														
TET1	0	MSKCC	GRCh37	10	70405658	70405658	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	34	649	0	ENST00000373644.4:c.3172T>A	p.Leu1058Met	p.L1058M	ENST00000373644	NM_030625.2	1058	Ttg/Atg																																																																														
FGF3	0	MSKCC	GRCh37	11	69631132	69631132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	53	808	2	ENST00000334134.2:c.280G>A	p.Gly94Arg	p.G94R	ENST00000334134	NM_005247.2	94	Ggg/Agg																																																																														
MLL	0	MSKCC	GRCh37	11	118374462	118374462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	43	559	0	ENST00000534358.1:c.7855T>C	p.Tyr2619His	p.Y2619H	ENST00000534358	NM_005933.3	2619	Tat/Cat																																																																														
RAD52	0	MSKCC	GRCh37	12	1025614	1025614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200657132		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	57	537	1	ENST00000358495.3:c.761C>T	p.Thr254Met	p.T254M	ENST00000358495	NM_134424.2	254	aCg/aTg																																																																														
MLL2	0	MSKCC	GRCh37	12	49443617	49443617	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	39	650	0	ENST00000301067.7:c.3754C>T	p.Arg1252Ter	p.R1252*	ENST00000301067	NM_003482.3	1252	Cga/Tga																																																																														
POLE	0	MSKCC	GRCh37	12	133202855	133202855	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	27	622	0	ENST00000320574.5:c.6379C>T	p.Arg2127Ter	p.R2127*	ENST00000320574	NM_006231.2	2127	Cga/Tga																																																																														
LATS2	0	MSKCC	GRCh37	13	21562285	21562285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	37	486	0	ENST00000382592.4:c.1634G>A	p.Arg545His	p.R545H	ENST00000382592	NM_014572.2	545	cGt/cAt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32954261	32954261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	78	685	0	ENST00000380152.3:c.9235G>A	p.Val3079Ile	p.V3079I	ENST00000380152		3079	Gtt/Att																																																																														
IRS2	0	MSKCC	GRCh37	13	110436239	110436239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	34	217	0	ENST00000375856.3:c.2162C>T	p.Pro721Leu	p.P721L	ENST00000375856	NM_003749.2	721	cCg/cTg																																																																														
DICER1	0	MSKCC	GRCh37	14	95579443	95579443	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	40	591	0	ENST00000343455.3:c.2026C>T	p.Arg676Ter	p.R676*	ENST00000343455	NM_177438.2	676	Cga/Tga																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473648	67473648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	32	594	0	ENST00000327367.4:c.728G>A	p.Arg243His	p.R243H	ENST00000327367	NM_005902.3	243	cGc/cAc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99251018	99251018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	37	560	1	ENST00000268035.6:c.322G>A	p.Gly108Ser	p.G108S	ENST00000268035	NM_000875.3	108	Ggc/Agc																																																																														
AXIN1	0	MSKCC	GRCh37	16	347213	347213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	51	442	2	ENST00000262320.3:c.1798G>A	p.Val600Met	p.V600M	ENST00000262320	NM_003502.3	600	Gtg/Atg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786718	3786718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	39	785	0	ENST00000262367.5:c.4493G>A	p.Arg1498Gln	p.R1498Q	ENST00000262367	NM_004380.2	1498	cGa/cAa																																																																														
CDH1	0	MSKCC	GRCh37	16	68862107	68862107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	39	657	0	ENST00000261769.5:c.2195G>A	p.Arg732Gln	p.R732Q	ENST00000261769	NM_004360.3	732	cGg/cAg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832330	72832330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	43	876	0	ENST00000268489.5:c.4251G>C	p.Gln1417His	p.Q1417H	ENST00000268489	NM_006885.3	1417	caG/caC																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992964	72992964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	44	877	1	ENST00000268489.5:c.1081G>A	p.Gly361Arg	p.G361R	ENST00000268489	NM_006885.3	361	Gga/Aga																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11924303	11924303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	16	89	0	ENST00000353533.5:c.100G>A	p.Val34Ile	p.V34I	ENST00000353533	NM_003010.3	34	Gtc/Atc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016670	12016670	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	28	532	0	ENST00000353533.5:c.806A>G	p.Tyr269Cys	p.Y269C	ENST00000353533	NM_003010.3	269	tAc/tGc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	33	609	0	ENST00000269571.5:c.2329G>A	p.Val777Met	p.V777M	ENST00000269571		777	Gtg/Atg																																																																														
STAT5A	0	MSKCC	GRCh37	17	40453322	40453322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	40	1070	1	ENST00000345506.4:c.1019A>G	p.Gln340Arg	p.Q340R	ENST00000345506	NM_003152.3	340	cAg/cGg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41234435	41234435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	31	670	0	ENST00000357654.3:c.4343G>A	p.Ser1448Asn	p.S1448N	ENST00000357654	NM_007294.3	1448	aGc/aAc																																																																														
SOX9	0	MSKCC	GRCh37	17	70117932	70117932	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	60	399	0	ENST00000245479.2:c.400G>T	p.Glu134Ter	p.E134*	ENST00000245479	NM_000346.3	134	Gag/Tag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226926	2226926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	21	186	0	ENST00000398665.3:c.4406C>T	p.Pro1469Leu	p.P1469L	ENST00000398665	NM_032482.2	1469	cCg/cTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5229645	5229645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	11	47	0	ENST00000357368.4:c.2206G>A	p.Ala736Thr	p.A736T	ENST00000357368	NM_002850.3	736	Gcc/Acc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10597450	10597450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200652594		P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	45	667	0	ENST00000171111.5:c.1753G>A	p.Asp585Asn	p.D585N	ENST00000171111	NM_203500.1	585	Gac/Aac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138624	11138624	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	30	508	0	ENST00000344626.4:c.3380A>G	p.Asp1127Gly	p.D1127G	ENST00000344626	NM_003072.3	1127	gAt/gGt																																																																														
POLD1	0	MSKCC	GRCh37	19	50906367	50906367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	45	682	4	ENST00000440232.2:c.1028G>A	p.Arg343His	p.R343H	ENST00000440232	NM_002691.3	343	cGc/cAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385183	41385183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	32	665	0	ENST00000373198.4:c.778C>T	p.Arg260Trp	p.R260W	ENST00000373198	NM_133170.3	260	Cgg/Tgg																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24145549	24145549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	31	677	0	ENST00000263121.7:c.568C>T	p.Arg190Trp	p.R190W	ENST00000263121	NM_003073.3	190	Cgg/Tgg																																																																														
MED12	0	MSKCC	GRCh37	X	70351421	70351421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	30	348	0	ENST00000374080.3:c.4069C>T	p.Arg1357Cys	p.R1357C	ENST00000374080		1357	Cgc/Tgc																																																																														
STAG2	0	MSKCC	GRCh37	X	123197819	123197819	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	42	414	0	ENST00000218089.9:c.1943A>T	p.Asn648Ile	p.N648I	ENST00000218089	NM_001042749.1	648	aAc/aTc																																																																														
MSH6	0	MSKCC	GRCh37	2	48027304	48027304	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	39	608	0	ENST00000234420.5:c.2184del	p.Ala729ProfsTer7	p.A729Pfs*7	ENST00000234420	NM_000179.2	728	Aaa/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	93	578	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	100	474	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459758	149459758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	150	605	1	ENST00000286301.3:c.449G>A	p.Arg150His	p.R150H	ENST00000286301	NM_005211.3	150	cGc/cAc																																																																														
RB1	0	MSKCC	GRCh37	13	48919323	48919323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	137	400	0	ENST00000267163.4:c.488G>A	p.Ser163Asn	p.S163N	ENST00000267163	NM_000321.2	163	aGc/aAc																																																																														
APC	0	MSKCC	GRCh37	5	112174352	112174353	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0005247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	28	484	1	ENST00000257430.4:c.3061_3062del	p.Leu1021ArgfsTer7	p.L1021Rfs*7	ENST00000257430	NM_000038.5	1021	CTa/a																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	33	359	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
NF1	0	MSKCC	GRCh37	17	29527502	29527503	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	45	485	0	ENST00000358273.4:c.952_953delGA	p.Glu318LysfsTer11	p.E318Kfs*11	ENST00000358273	NM_001042492.2	317	acAGaa/acaa																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9781597	9781597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	82	482	2	ENST00000377346.4:c.1907G>A	p.Arg636Gln	p.R636Q	ENST00000377346	NM_005026.3	636	cGg/cAg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212426806	212426806	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	17	373	0	ENST00000342788.4:c.2309T>A	p.Leu770Gln	p.L770Q	ENST00000342788	NM_005235.2	770	cTg/cAg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967228	93967228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	21	530	0	ENST00000369303.4:c.2124G>A	p.Met708Ile	p.M708I	ENST00000369303	NM_004440.3	708	atG/atA																																																																														
STAT3	0	MSKCC	GRCh37	17	40481471	40481471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	46	653	0	ENST00000264657.5:c.1238T>C	p.Leu413Pro	p.L413P	ENST00000264657	NM_139276.2	413	cTg/cCg																																																																														
AXL	0	MSKCC	GRCh37	19	41758858	41758858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	50	481	0	ENST00000301178.4:c.1912G>A	p.Gly638Arg	p.G638R	ENST00000301178	NM_021913.4	638	Ggg/Agg																																																																														
NF2	0	MSKCC	GRCh37	22	30051610	30051610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	17	625	0	ENST00000338641.4:c.544G>C	p.Glu182Gln	p.E182Q	ENST00000338641	NM_000268.3	182	Gaa/Caa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240838	53240838	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	41	484	1	ENST00000375401.3:c.1243-1G>T		p.X415_splice	ENST00000375401	NM_004187.3	415																																																																															
NF1	0	MSKCC	GRCh37	17	29490289	29490292	+	frameshift_variant	Frame_Shift_Del	DEL	GTGA	GTGA	-			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	47	557	1	ENST00000358273.4:c.374_377del	p.Arg125GlnfsTer39	p.R125Qfs*39	ENST00000358273	NM_001042492.2	125	cGTGAa/ca																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872935	35872951	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCTTCACCTGGCGGA	TCCCTTCACCTGGCGGA	-			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	65	658	0	ENST00000216797.5:c.281_297del	p.Ile94ArgfsTer29	p.I94Rfs*29	ENST00000216797	NM_020529.2	94	aTCCGCCAGGTGAAGGGA/a																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829109	72829110	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	25	441	1	ENST00000268489.5:c.7471_7472del	p.Gln2491ValfsTer42	p.Q2491Vfs*42	ENST00000268489	NM_006885.3	2491	CAg/g																																																																														
TP53	0	MSKCC	GRCh37	17	7578505	7578510	+	inframe_deletion	In_Frame_Del	DEL	GGGCAG	GGGCAG	-			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	92	416	0	ENST00000269305.4:c.420_425del	p.Cys141_Pro142del	p.C141_P142del	ENST00000269305	NM_001126112.2	140	acCTGCCCt/act																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0005253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	21	417	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	37	413	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005277-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			353	32	312	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
RAF1	0	MSKCC	GRCh37	3	12641706	12641706	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005277-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			760	83	436	1	ENST00000251849.4:c.935T>A	p.Val312Glu	p.V312E	ENST00000251849	NM_002880.3	312	gTg/gAg																																																																														
SETD2	0	MSKCC	GRCh37	3	47144879	47144879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005277-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			684	108	475	0	ENST00000409792.3:c.4874G>A	p.Arg1625His	p.R1625H	ENST00000409792	NM_014159.6	1625	cGt/cAt																																																																														
ATRX	0	MSKCC	GRCh37	X	76909634	76909634	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005277-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	83	765	1	ENST00000373344.5:c.4271A>G	p.Lys1424Arg	p.K1424R	ENST00000373344	NM_000489.3	1424	aAa/aGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	199	371	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	316	586	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9783259	9783259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	118	703	3	ENST00000377346.4:c.2503G>A	p.Ala835Thr	p.A835T	ENST00000377346	NM_005026.3	835	Gcc/Acc																																																																														
ATRX	0	MSKCC	GRCh37	X	76938229	76938230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	272	528	1	ENST00000373344.5:c.2518dup	p.Arg840LysfsTer9	p.R840Kfs*9	ENST00000373344	NM_000489.3	840	aga/aAga																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139407508	139407508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	131	710	0	ENST00000277541.6:c.2432C>T	p.Ala811Val	p.A811V	ENST00000277541	NM_017617.3	811	gCc/gTc																																																																														
RB1	0	MSKCC	GRCh37	13	48942661	48942661	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0005301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	462	420	0	ENST00000267163.4:c.1050-2A>C		p.X350_splice	ENST00000267163	NM_000321.2	350																																																																															
NOTCH3	4854	MSKCC	GRCh37	19	15272336	15272337	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs771517374		P-0005301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	73	383	1	ENST00000263388.2:c.6102dup	p.Gly2035ArgfsTer60	p.G2035Rfs*60	ENST00000263388	NM_000435.2	2034	-/C																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	82	270	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0005311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	130	278	3	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
JUN	0	MSKCC	GRCh37	1	59247748	59247748	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0005311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	153	317	0	ENST00000371222.2:c.995G>C	p.Ter332SerextTer7	p.*332Sext*7	ENST00000371222	NM_002228.3	332	tGa/tCa																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713812	30713812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	163	225	0	ENST00000359013.4:c.1212C>A	p.Asp404Glu	p.D404E	ENST00000359013	NM_001024847.2	404	gaC/gaA																																																																														
INHBA	0	MSKCC	GRCh37	7	41739909	41739909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	102	329	0	ENST00000242208.4:c.64C>T	p.Pro22Ser	p.P22S	ENST00000242208	NM_002192.2	22	Ccc/Tcc																																																																														
CDK6	0	MSKCC	GRCh37	7	92354984	92354984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	71	281	0	ENST00000265734.4:c.493G>A	p.Gly165Ser	p.G165S	ENST00000265734	NM_001259.6	165	Ggc/Agc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243756	41243756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	59	322	0	ENST00000357654.3:c.3792G>T	p.Lys1264Asn	p.K1264N	ENST00000357654	NM_007294.3	1264	aaG/aaT																																																																														
IKBKE	0	MSKCC	GRCh37	1	206650052	206650053	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	83	285	0	ENST00000367120.3:c.575dup	p.Pro193AlafsTer112	p.P193Afs*112	ENST00000367120	NM_014002.3	191	cga/cgAa																																																																														
SOX9	0	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	37	33	2	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	314	399	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	317	500	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
IGF2	0	MSKCC	GRCh37	11	2154890	2154890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1248	244	560	0	ENST00000434045.2:c.331C>A	p.Pro111Thr	p.P111T	ENST00000434045	NM_001127598.1	111	Ccc/Acc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911235	32911235	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1859	217	951	0	ENST00000380152.3:c.2743A>C	p.Thr915Pro	p.T915P	ENST00000380152		915	Act/Cct																																																																														
MALT1	0	MSKCC	GRCh37	18	56400717	56400717	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	520	910	1	ENST00000348428.3:c.1311A>T	p.Glu437Asp	p.E437D	ENST00000348428	NM_006785.3	437	gaA/gaT																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265897	41266218	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCA	GTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCA	-			P-0005327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			26	122	50	0	ENST00000349496.5:c.14-117_218del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	194	352	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	308	397	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
JAK1	0	MSKCC	GRCh37	1	65312335	65312335	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	165	326	0	ENST00000342505.4:c.1984G>C	p.Glu662Gln	p.E662Q	ENST00000342505	NM_002227.2	662	Gag/Cag																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39593419	39593419	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	107	217	0	ENST00000262039.4:c.1184A>G	p.Tyr395Cys	p.Y395C	ENST00000262039	NM_002647.2	395	tAc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578454	7578467	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCGGACGCGGGT	GCGCGGACGCGGGT	-			P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	127	275	0	ENST00000269305.4:c.463_476del	p.Thr155HisfsTer21	p.T155Hfs*21	ENST00000269305	NM_001126112.2	155	ACCCGCGTCCGCGCc/c																																																																														
RB1	0	MSKCC	GRCh37	13	48878076	48878077	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	38	76	1	ENST00000267163.4:c.30dup	p.Ala11ArgfsTer20	p.A11Rfs*20	ENST00000267163	NM_000321.2	10	gcc/gCcc																																																																														
RBM10	0	MSKCC	GRCh37	X	47044753	47044754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	302	139	0	ENST00000329236.7:c.1920dup	p.Asp641Ter	p.D641*	ENST00000329236	NM_001204466.1	640	agt/agTt																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740620	145740620	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	423	362	0	ENST00000428558.2:c.1397C>G	p.Pro466Arg	p.P466R	ENST00000428558	NM_004260.3	466	cCg/cGg																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4097290	4097290	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	260	382	0	ENST00000262948.5:c.971A>G	p.Tyr324Cys	p.Y324C	ENST00000262948	NM_030662.3	324	tAt/tGt																																																																														
AR	0	MSKCC	GRCh37	X	66937371	66937371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	187	229	0	ENST00000374690.3:c.2225G>T	p.Trp742Leu	p.W742L	ENST00000374690	NM_000044.3	742	tGg/tTg																																																																														
VHL	0	MSKCC	GRCh37	3	10183873	10183873	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0005354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	63	98	0	ENST00000256474.2:c.340+2T>A		p.X114_splice	ENST00000256474	NM_000551.3	114																																																																															
BAP1	0	MSKCC	GRCh37	3	52440383	52440383	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	104	226	0	ENST00000460680.1:c.669C>G	p.Tyr223Ter	p.Y223*	ENST00000460680	NM_004656.3	223	taC/taG																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522400	157522400	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	112	298	0	ENST00000346085.5:c.4672T>G	p.Ser1558Ala	p.S1558A	ENST00000346085	NM_020732.3	1558	Tcc/Gcc																																																																														
MLL	0	MSKCC	GRCh37	11	118359403	118359403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	127	357	0	ENST00000534358.1:c.4407C>G	p.Asp1469Glu	p.D1469E	ENST00000534358	NM_005933.3	1469	gaC/gaG																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792753	33792753	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	15	41	0	ENST00000498907.2:c.568T>C	p.Ser190Pro	p.S190P	ENST00000498907	NM_004364.3	190	Tcg/Ccg																																																																														
ATRX	0	MSKCC	GRCh37	X	76931778	76931778	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	120	277	0	ENST00000373344.5:c.3752C>G	p.Ser1251Cys	p.S1251C	ENST00000373344	NM_000489.3	1251	tCt/tGt																																																																														
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1309	1193	235	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
CDK12	0	MSKCC	GRCh37	17	37665992	37665992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2683	698	340	0	ENST00000447079.4:c.2644C>T	p.Arg882Trp	p.R882W	ENST00000447079	NM_015083.1	882	Cgg/Tgg																																																																														
IRF4	0	MSKCC	GRCh37	6	401520	401520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1460	263	322	0	ENST00000380956.4:c.842C>T	p.Thr281Met	p.T281M	ENST00000380956	NM_001195286.1	281	aCg/aTg																																																																														
CTCF	0	MSKCC	GRCh37	16	67650653	67650653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2051	255	360	0	ENST00000264010.4:c.958C>T	p.Arg320Cys	p.R320C	ENST00000264010	NM_006565.3	320	Cgt/Tgt																																																																														
CDK12	0	MSKCC	GRCh37	17	37646980	37646981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	2321	364	0	ENST00000447079.4:c.2103dup	p.Pro702ThrfsTer27	p.P702Tfs*27	ENST00000447079	NM_015083.1	701	aga/agAa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	36	184	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	36	184	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	69	452	0	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
PIK3CD	0	MSKCC	GRCh37	1	9783241	9783241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	53	411	1	ENST00000377346.4:c.2485C>T	p.Leu829Phe	p.L829F	ENST00000377346	NM_005026.3	829	Ctc/Ttc																																																																														
DDR2	0	MSKCC	GRCh37	1	162724526	162724526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	46	474	0	ENST00000367921.3:c.298G>T	p.Val100Leu	p.V100L	ENST00000367921	NM_006182.2	100	Gtg/Ttg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1801234	1801234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	54	342	1	ENST00000260795.2:c.363C>A	p.Phe121Leu	p.F121L	ENST00000260795		121	ttC/ttA																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803660	1803660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	65	559	1	ENST00000260795.2:c.838G>A	p.Asp280Asn	p.D280N	ENST00000260795		280	Gac/Aac																																																																														
FANCC	2176	MSKCC	GRCh37	9	97897676	97897676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	71	533	0	ENST00000289081.3:c.795G>C	p.Glu265Asp	p.E265D	ENST00000289081	NM_000136.2	265	gaG/gaC																																																																														
DICER1	0	MSKCC	GRCh37	14	95569715	95569715	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	40	355	0	ENST00000343455.3:c.4018G>C	p.Glu1340Gln	p.E1340Q	ENST00000343455	NM_177438.2	1340	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7577157	7577157	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	53	507	0	ENST00000269305.4:c.783-2A>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
KEAP1	0	MSKCC	GRCh37	19	10602335	10602335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	56	408	1	ENST00000171111.5:c.1243C>T	p.Arg415Cys	p.R415C	ENST00000171111	NM_203500.1	415	Cgc/Tgc																																																																														
CIC	0	MSKCC	GRCh37	19	42795021	42795021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	76	469	1	ENST00000575354.2:c.2101C>T	p.Pro701Ser	p.P701S	ENST00000575354	NM_015125.3	701	Cca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	94	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
MST1	0	MSKCC	GRCh37	3	49722905	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0005390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	25	126	1	ENST00000449682.2:c.1420_1421dup	p.Asp475GlnfsTer52	p.D475Qfs*52	ENST00000449682	NM_020998.3	474	cca/ccCCa																																																																														
TP53	0	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	101	385	1	ENST00000269305.4:c.700T>A	p.Tyr234Asn	p.Y234N	ENST00000269305	NM_001126112.2	234	Tac/Aac																																																																														
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1162	436	489	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	329	537	0	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																														
CD276	0	MSKCC	GRCh37	15	73996231	73996231	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	67	186	0	ENST00000318443.5:c.965A>T	p.Asn322Ile	p.N322I	ENST00000318443	NM_001024736.1	322	aAt/aTt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678391	88678391	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	246	638	2	ENST00000360948.2:c.1145A>T	p.Asn382Ile	p.N382I	ENST00000360948	NM_001012338.2	382	aAc/aTc																																																																														
NUP93	0	MSKCC	GRCh37	16	56868687	56868687	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1761	115	640	0	ENST00000308159.5:c.1779A>T	p.Arg593Ser	p.R593S	ENST00000308159	NM_014669.4	593	agA/agT																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144018	11144018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	174	442	0	ENST00000344626.4:c.3599G>A	p.Arg1200His	p.R1200H	ENST00000344626	NM_003072.3	1200	cGt/cAt																																																																														
MED12	0	MSKCC	GRCh37	X	70339922	70339922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1398	185	622	0	ENST00000374080.3:c.455C>A	p.Pro152His	p.P152H	ENST00000374080		152	cCt/cAt																																																																														
MED12	0	MSKCC	GRCh37	X	70362067	70362067	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0005393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	349	589	0	ENST00000374080.3:c.6533G>T	p.Ter2178LeuextTer18	p.*2178Lext*18	ENST00000374080		2178	tGa/tTa																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056542	26056542	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	48	174	0	ENST00000343677.2:c.115C>A	p.Pro39Thr	p.P39T	ENST00000343677	NM_005319.3	39	Ccg/Acg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15278069	15278069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	95	608	1	ENST00000263388.2:c.5353C>T	p.Arg1785Cys	p.R1785C	ENST00000263388	NM_000435.2	1785	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	134	501	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	99	529	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
KDM5A	0	MSKCC	GRCh37	12	404818	404819	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0005441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1458	137	520	0	ENST00000399788.2:c.4375_4376del	p.Leu1459GlyfsTer18	p.L1459Gfs*18	ENST00000399788	NM_001042603.1	1459	CTg/g																																																																														
SOCS1	0	MSKCC	GRCh37	16	11349214	11349230	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCGCGGGCGCGCGGG	GGCCGCGGGCGCGCGGG	-			P-0005441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	27	47	0	ENST00000332029.2:c.106_122del	p.Pro36ValfsTer75	p.P36Vfs*75	ENST00000332029	NM_003745.1	36	CCCGCGCGCCCGCGGCCg/g																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	288	592	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	70	158	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738411	145738416	+	inframe_deletion	In_Frame_Del	DEL	GGTGCA	GGTGCA	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	85	447	0	ENST00000428558.2:c.2569_2574delTGCACC	p.Cys857_Thr858del	p.C857_T858del	ENST00000428558	NM_004260.3	857	TGCACC/-																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	123	427	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	131	325	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1369	251	788	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
DAXX	0	MSKCC	GRCh37	6	33287520	33287520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141395832		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	119	367	0	ENST00000374542.5:c.1577G>A	p.Arg526His	p.R526H	ENST00000374542	NM_001141970.1	526	cGc/cAc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88423601	88423601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	111	556	0	ENST00000360948.2:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000360948	NM_001012338.2	745	cGg/cAg																																																																														
CCND1	0	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	145	613	0	ENST00000227507.2:c.859C>T	p.Pro287Ser	p.P287S	ENST00000227507	NM_053056.2	287	Ccc/Tcc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	129	576	0	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																														
HRAS	0	MSKCC	GRCh37	11	533881	533881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	163	527	1	ENST00000311189.7:c.175G>A	p.Ala59Thr	p.A59T	ENST00000311189		59	Gcc/Acc																																																																														
FLT4	0	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	88	481	1	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	296	802	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	208	668	11	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
B2M	0	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	113	262	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
ARID1B	57492	MSKCC	GRCh37	6	157488293	157488293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750810656		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	94	300	0	ENST00000346085.5:c.2999C>T	p.Ala1000Val	p.A1000V	ENST00000346085	NM_020732.3	1000	gCg/gTg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2217783	2217783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	142	535	0	ENST00000398665.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000398665	NM_032482.2	853	Cgc/Tgc																																																																														
NEGR1	0	MSKCC	GRCh37	1	72400902	72400902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	218	814	1	ENST00000357731.5:c.269G>A	p.Arg90Gln	p.R90Q	ENST00000357731	NM_173808.2	90	cGa/cAa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096504	178096504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	220	563	0	ENST00000397062.3:c.827C>T	p.Thr276Ile	p.T276I	ENST00000397062	NM_006164.4	276	aCa/aTa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178097298	178097298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	168	349	2	ENST00000397062.3:c.416C>T	p.Thr139Met	p.T139M	ENST00000397062	NM_006164.4	139	aCg/aTg																																																																														
CASP8	0	MSKCC	GRCh37	2	202150022	202150022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	141	418	0	ENST00000358485.4:c.1463T>C	p.Leu488Pro	p.L488P	ENST00000358485	NM_001080125.1	488	cTg/cCg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30648431	30648431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	134	476	0	ENST00000359013.4:c.56G>A	p.Arg19His	p.R19H	ENST00000359013	NM_001024847.2	19	cGt/cAt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71064727	71064727	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	140	455	0	ENST00000318789.4:c.947T>C	p.Val316Ala	p.V316A	ENST00000318789	NM_032682.5	316	gTg/gCg																																																																														
IRF4	0	MSKCC	GRCh37	6	407527	407527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	138	517	0	ENST00000380956.4:c.1285G>A	p.Asp429Asn	p.D429N	ENST00000380956	NM_001195286.1	429	Gat/Aat																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778012	27778012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1506	292	1138	2	ENST00000369163.2:c.161G>A	p.Arg54His	p.R54H	ENST00000369163	NM_003536.2	54	cGc/cAc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738446	145738446	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	83	369	0	ENST00000428558.2:c.2539C>T	p.Gln847Ter	p.Q847*	ENST00000428558	NM_004260.3	847	Cag/Tag																																																																														
SYK	0	MSKCC	GRCh37	9	93606365	93606365	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	82	524	0	ENST00000375746.1:c.185A>G	p.His62Arg	p.H62R	ENST00000375746	NM_001174167.1	62	cAc/cGc																																																																														
SYK	0	MSKCC	GRCh37	9	93639968	93639968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	115	432	0	ENST00000375746.1:c.1297G>A	p.Val433Met	p.V433M	ENST00000375746	NM_001174167.1	433	Gtg/Atg																																																																														
RET	0	MSKCC	GRCh37	10	43622047	43622047	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	76	373	0	ENST00000355710.3:c.3064A>G	p.Thr1022Ala	p.T1022A	ENST00000355710	NM_020975.4	1022	Act/Gct																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18691130	18691130	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	105	436	0	ENST00000266497.5:c.3241T>G	p.Phe1081Val	p.F1081V	ENST00000266497		1081	Ttt/Gtt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32937670	32937670	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	75	221	0	ENST00000380152.3:c.8331G>T	p.Lys2777Asn	p.K2777N	ENST00000380152		2777	aaG/aaT																																																																														
DIS3	0	MSKCC	GRCh37	13	73346974	73346974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	135	273	0	ENST00000377767.4:c.1243C>T	p.His415Tyr	p.H415Y	ENST00000377767	NM_014953.3	415	Cac/Tac																																																																														
IRS2	0	MSKCC	GRCh37	13	110436713	110436713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	126	452	0	ENST00000375856.3:c.1688C>T	p.Ala563Val	p.A563V	ENST00000375856	NM_003749.2	563	gCg/gTg																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029245	14029245	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	194	561	0	ENST00000311895.7:c.1456A>G	p.Lys486Glu	p.K486E	ENST00000311895	NM_005236.2	486	Aaa/Gaa																																																																														
SUZ12	0	MSKCC	GRCh37	17	30315397	30315397	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	149	538	0	ENST00000322652.5:c.1082G>A	p.Trp361Ter	p.W361*	ENST00000322652	NM_015355.2	361	tGg/tAg																																																																														
CDK12	0	MSKCC	GRCh37	17	37646866	37646866	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141353560		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	210	570	1	ENST00000447079.4:c.1988G>A	p.Arg663His	p.R663H	ENST00000447079	NM_015083.1	663	cGt/cAt																																																																														
STAT5A	0	MSKCC	GRCh37	17	40453375	40453375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	230	971	0	ENST00000345506.4:c.1072G>A	p.Gly358Arg	p.G358R	ENST00000345506	NM_003152.3	358	Ggg/Agg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2206734	2206734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	173	620	0	ENST00000398665.3:c.794G>T	p.Arg265Ile	p.R265I	ENST00000398665	NM_032482.2	265	aGa/aTa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214748	5214748	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	68	367	0	ENST00000357368.4:c.4319-1G>T		p.X1440_splice	ENST00000357368	NM_002850.3	1440																																																																															
DNMT1	0	MSKCC	GRCh37	19	10286283	10286283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	148	518	2	ENST00000340748.4:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000340748		178	cGg/cAg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123673	11123673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	126	483	0	ENST00000344626.4:c.2323G>A	p.Gly775Ser	p.G775S	ENST00000344626	NM_003072.3	775	Ggc/Agc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52723007	52723007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	149	617	2	ENST00000322088.6:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000322088	NM_014225.5	398	Cgg/Tgg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021182	31021182	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201899433		P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	142	562	0	ENST00000375687.4:c.1181G>A	p.Arg394His	p.R394H	ENST00000375687	NM_015338.5	394	cGt/cAt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164725	36164725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	162	597	0	ENST00000300305.3:c.1150C>G	p.Pro384Ala	p.P384A	ENST00000300305		384	Ccc/Gcc																																																																														
U2AF1	0	MSKCC	GRCh37	21	44514663	44514663	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	125	472	0	ENST00000291552.4:c.493C>T	p.Arg165Ter	p.R165*	ENST00000291552	NM_006758.2	165	Cga/Tga																																																																														
MED12	0	MSKCC	GRCh37	X	70342606	70342606	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	198	317	0	ENST00000374080.3:c.1367T>C	p.Val456Ala	p.V456A	ENST00000374080		456	gTa/gCa																																																																														
DNMT3B	1789	MSKCC	GRCh37	20	31375194	31375194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	112	658	0	ENST00000328111.2:c.596del	p.Gly199AlafsTer27	p.G199Afs*27	ENST00000328111	NM_006892.3	197	caG/ca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391799	139391799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	45	361	2	ENST00000277541.6:c.6392delG	p.Gly2131AlafsTer117	p.G2131Afs*117	ENST00000277541	NM_017617.3	2131	gGc/gc																																																																														
U2AF1	0	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	39	336	0	ENST00000291552.4:c.648_653delCGGTGG	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	140	507	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098477	11098477	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	76	257	3	ENST00000344626.4:c.999del	p.Gln335SerfsTer76	p.Q335Sfs*76	ENST00000344626	NM_003072.3	332	tCc/tc																																																																														
NF1	0	MSKCC	GRCh37	17	29562958	29562958	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	196	608	1	ENST00000358273.4:c.3897del	p.Lys1299AsnfsTer10	p.K1299Nfs*10	ENST00000358273	NM_001042492.2	1298	cAa/ca																																																																														
MLH1	0	MSKCC	GRCh37	3	37067329	37067329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	147	498	0	ENST00000231790.2:c.1240del	p.Glu414ArgfsTer77	p.E414Rfs*77	ENST00000231790	NM_000249.3	414	Gag/ag																																																																														
AMER1	0	MSKCC	GRCh37	X	63412058	63412059	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	197	472	0	ENST00000330258.3:c.1108dupG	p.Glu370GlyfsTer8	p.E370Gfs*8	ENST00000330258	NM_152424.3	370	gag/gGag																																																																														
MLH1	0	MSKCC	GRCh37	3	37035140	37035142	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	54	259	0	ENST00000231790.2:c.105_107del	p.Met35del	p.M35del	ENST00000231790	NM_000249.3	34	gaGATg/gag																																																																														
APC	324	MSKCC	GRCh37	5	112174264	112174267	+	frameshift_variant	Frame_Shift_Del	DEL	AAGT	AAGT	-			P-0005455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	186	531	0	ENST00000257430.4:c.2977_2980del	p.Lys993PhefsTer11	p.K993Ffs*11	ENST00000257430	NM_000038.5	991	gaAAGT/ga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	50	199	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0005458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	144	448	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																																																														
VHL	0	MSKCC	GRCh37	3	10188218	10188218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	167	443	0	ENST00000256474.2:c.361G>T	p.Asp121Tyr	p.D121Y	ENST00000256474	NM_000551.3	121	Gat/Tat																																																																														
KDM5C	0	MSKCC	GRCh37	X	53245350	53245350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	140	538	0	ENST00000375401.3:c.687G>T	p.Lys229Asn	p.K229N	ENST00000375401	NM_004187.3	229	aaG/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	79	449	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	26	257	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
GLI1	0	MSKCC	GRCh37	12	57861129	57861129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	114	669	1	ENST00000228682.2:c.926G>A	p.Arg309Gln	p.R309Q	ENST00000228682	NM_005269.2	309	cGg/cAg																																																																														
INHA	0	MSKCC	GRCh37	2	220439724	220439724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201577506		P-0005468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	91	757	1	ENST00000243786.2:c.577G>A	p.Val193Ile	p.V193I	ENST00000243786	NM_002191.3	193	Gtc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	90	644	2	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	468	333	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16024477	16024477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	35	379	0	ENST00000268712.3:c.1741C>T	p.Arg581Cys	p.R581C	ENST00000268712	NM_006311.3	581	Cgt/Tgt																																																																														
FAT1	0	MSKCC	GRCh37	4	187630303	187630303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	26	345	0	ENST00000441802.2:c.679C>T	p.Arg227Cys	p.R227C	ENST00000441802	NM_005245.3	227	Cgt/Tgt																																																																														
WT1	0	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	70	300	0	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																																																														
VTCN1	0	MSKCC	GRCh37	1	117695749	117695749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	60	319	0	ENST00000369458.3:c.688G>T	p.Asp230Tyr	p.D230Y	ENST00000369458	NM_024626.3	230	Gac/Tac																																																																														
IKBKE	0	MSKCC	GRCh37	1	206650182	206650182	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0005488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	19	216	0	ENST00000367120.3:c.701+1G>T		p.X234_splice	ENST00000367120	NM_014002.3	234																																																																															
ERBB4	0	MSKCC	GRCh37	2	212495318	212495318	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0005488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	95	253	0	ENST00000342788.4:c.1948A>C	p.Thr650Pro	p.T650P	ENST00000342788	NM_005235.2	650	Act/Cct																																																																														
SMO	0	MSKCC	GRCh37	7	128829272	128829272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	56	473	2	ENST00000249373.3:c.280G>A	p.Gly94Arg	p.G94R	ENST00000249373	NM_005631.4	94	Gga/Aga																																																																														
RAD21	0	MSKCC	GRCh37	8	117864267	117864267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1575	173	575	1	ENST00000297338.2:c.1390G>A	p.Asp464Asn	p.D464N	ENST00000297338	NM_006265.2	464	Gat/Aat																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980760	40980760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	55	345	1	ENST00000373198.4:c.1726C>T	p.Pro576Ser	p.P576S	ENST00000373198	NM_133170.3	576	Ccc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7578247	7578247	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	513	529	1	ENST00000269305.4:c.602delT	p.Leu201CysfsTer46	p.L201Cfs*46	ENST00000269305	NM_001126112.2	201	tTg/tg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	853	454	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508535	106508535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	115	137	1	ENST00000359195.3:c.529C>T	p.Arg177Cys	p.R177C	ENST00000359195	NM_002649.2	177	Cgc/Tgc																																																																														
ATM	0	MSKCC	GRCh37	11	108236064	108236064	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	131	495	0	ENST00000278616.4:c.9000G>C	p.Gln3000His	p.Q3000H	ENST00000278616	NM_000051.3	3000	caG/caC																																																																														
MLL2	0	MSKCC	GRCh37	12	49428425	49428425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	118	564	1	ENST00000301067.7:c.10380G>C	p.Gln3460His	p.Q3460H	ENST00000301067	NM_003482.3	3460	caG/caC																																																																														
BLM	0	MSKCC	GRCh37	15	91333942	91333942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	139	662	0	ENST00000355112.3:c.2887C>T	p.His963Tyr	p.H963Y	ENST00000355112	NM_000057.2	963	Cat/Tat																																																																														
CHEK2	0	MSKCC	GRCh37	22	29095885	29095885	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	129	615	0	ENST00000328354.6:c.949A>T	p.Lys317Ter	p.K317*	ENST00000328354	NM_007194.3	317	Aaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	445	590	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245404	153245404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	185	501	0	ENST00000281708.4:c.1787C>T	p.Ser596Phe	p.S596F	ENST00000281708	NM_033632.3	596	tCt/tTt																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	335	614	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185181375	185181375	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	129	723	0	ENST00000265026.3:c.1316A>C	p.Lys439Thr	p.K439T	ENST00000265026	NM_004721.4	439	aAg/aCg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925711	114925711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1433	311	926	1	ENST00000543371.1:c.1789G>A	p.Val597Ile	p.V597I	ENST00000543371	NM_001198531.1	597	Gtc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	298	497	0	ENST00000269305.4:c.404G>C	p.Cys135Ser	p.C135S	ENST00000269305	NM_001126112.2	135	tGc/tCc																																																																														
TSC1	0	MSKCC	GRCh37	9	135798878	135798894	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCTGCAGGAGAAAAGG	ATCTGCAGGAGAAAAGG	-			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	34	317	0	ENST00000298552.3:c.364-15_365del		p.X122_splice	ENST00000298552	NM_001162426.1	122																																																																															
APC	0	MSKCC	GRCh37	5	112175438	112175439	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0005522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	84	405	0	ENST00000257430.4:c.4147_4148delAT	p.Met1383ValfsTer2	p.M1383Vfs*2	ENST00000257430	NM_000038.5	1383	ATg/g																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021173	31021173	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	178	546	0	ENST00000375687.4:c.1173del	p.Glu391AspfsTer71	p.E391Dfs*71	ENST00000375687	NM_015338.5	391	gAa/ga																																																																														
CDK12	0	MSKCC	GRCh37	17	37618643	37618643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	374	419	0	ENST00000447079.4:c.319C>G	p.Arg107Gly	p.R107G	ENST00000447079	NM_015083.1	107	Cgc/Ggc																																																																														
CDK12	0	MSKCC	GRCh37	17	37618617	37618639	+	frameshift_variant	Frame_Shift_Del	DEL	AACGTCGTGGATCAGATCGGAGC	AACGTCGTGGATCAGATCGGAGC	-			P-0005555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	367	389	0	ENST00000447079.4:c.293_315del	p.Glu98GlyfsTer21	p.E98Gfs*21	ENST00000447079	NM_015083.1	98	gAACGTCGTGGATCAGATCGGAGC/g																																																																														
CDK12	0	MSKCC	GRCh37	17	37627990	37627990	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	362	337	0	ENST00000447079.4:c.1905del	p.Leu635PhefsTer20	p.L635Ffs*20	ENST00000447079	NM_015083.1	635	ttA/tt																																																																														
MALT1	0	MSKCC	GRCh37	18	56412997	56412997	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1263	496	548	0	ENST00000348428.3:c.2011del	p.Arg671AspfsTer8	p.R671Dfs*8	ENST00000348428	NM_006785.3	671	Aga/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	464	436	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139393701	139393701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	333	340	0	ENST00000277541.6:c.5945G>A	p.Arg1982Gln	p.R1982Q	ENST00000277541	NM_017617.3	1982	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	260	311	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	36	605	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
RICTOR	0	MSKCC	GRCh37	5	38968090	38968090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	14	448	0	ENST00000357387.3:c.1015C>G	p.Leu339Val	p.L339V	ENST00000357387	NM_152756.3	339	Cta/Gta																																																																														
ROS1	0	MSKCC	GRCh37	6	117662363	117662363	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	13	348	0	ENST00000368508.3:c.5014T>G	p.Leu1672Val	p.L1672V	ENST00000368508	NM_002944.2	1672	Ttg/Gtg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923338	9923338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	10	487	0	ENST00000330684.3:c.1949C>A	p.Ala650Asp	p.A650D	ENST00000330684	NM_001134407.1	650	gCt/gAt																																																																														
ACVR1	0	MSKCC	GRCh37	2	158637098	158637098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	659	738	2	ENST00000263640.3:c.82G>T	p.Val28Phe	p.V28F	ENST00000263640	NM_001105.4	28	Gtc/Ttc																																																																														
ROS1	0	MSKCC	GRCh37	6	117674303	117674303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	324	429	1	ENST00000368508.3:c.4171G>T	p.Asp1391Tyr	p.D1391Y	ENST00000368508	NM_002944.2	1391	Gat/Tat																																																																														
MLL	0	MSKCC	GRCh37	11	118365469	118365469	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	46	509	0	ENST00000534358.1:c.5350A>G	p.Lys1784Glu	p.K1784E	ENST00000534358	NM_005933.3	1784	Aaa/Gaa																																																																														
RB1	0	MSKCC	GRCh37	13	49039408	49039408	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	415	520	0	ENST00000267163.4:c.2394del	p.Ile799PhefsTer11	p.I799Ffs*11	ENST00000267163	NM_000321.2	798	cGg/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	185	302	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	319	596	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	113	285	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952138	178952138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	146	255	0	ENST00000263967.3:c.3193C>T	p.His1065Tyr	p.H1065Y	ENST00000263967	NM_006218.2	1065	Cat/Tat																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	364	633	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																																																														
IRS2	0	MSKCC	GRCh37	13	110436177	110436177	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	254	479	0	ENST00000375856.3:c.2224T>C	p.Tyr742His	p.Y742H	ENST00000375856	NM_003749.2	742	Tac/Cac																																																																														
APC	0	MSKCC	GRCh37	5	112175648	112175648	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	283	459	0	ENST00000257430.4:c.4358delC	p.Pro1453LeufsTer20	p.P1453Lfs*20	ENST00000257430	NM_000038.5	1453	Cct/ct																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591836	48591837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGG			P-0005589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	260	450	0	ENST00000342988.3:c.1000_1003dup	p.Val335AlafsTer7	p.V335Afs*7	ENST00000342988	NM_005359.5	333	-/CAGG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	98	190	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0005592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	23	36	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087911	27087911	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	90	445	2	ENST00000324856.7:c.2198C>A	p.Ser733Ter	p.S733*	ENST00000324856	NM_006015.4	733	tCg/tAg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462860	120462860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	110	278	1	ENST00000256646.2:c.5471G>A	p.Arg1824His	p.R1824H	ENST00000256646	NM_024408.3	1824	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	735	787	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			457	84	247	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			864	122	452	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			783	124	471	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
CDK4	0	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			762	91	385	1	ENST00000257904.6:c.71G>A	p.Arg24His	p.R24H	ENST00000257904	NM_000075.3	24	cGt/cAt																																																																														
RNF43	0	MSKCC	GRCh37	17	56435734	56435734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			448	72	278	0	ENST00000407977.2:c.1403C>T	p.Ser468Leu	p.S468L	ENST00000407977		468	tCa/tTa																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			66	13	37	2	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg																																																																														
SPEN	0	MSKCC	GRCh37	1	16254944	16254944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			605	107	346	0	ENST00000375759.3:c.2209C>T	p.Pro737Ser	p.P737S	ENST00000375759	NM_015001.2	737	Cct/Tct																																																																														
FH	0	MSKCC	GRCh37	1	241671962	241671962	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs11545658		P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			601	119	474	1	ENST00000366560.3:c.679C>T	p.Gln227Ter	p.Q227*	ENST00000366560	NM_000143.3	227	Cag/Tag																																																																														
IRS1	0	MSKCC	GRCh37	2	227661566	227661566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			720	124	387	0	ENST00000305123.5:c.1889G>A	p.Gly630Glu	p.G630E	ENST00000305123	NM_005544.2	630	gGa/gAa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55144117	55144117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			776	103	445	0	ENST00000257290.5:c.1946C>G	p.Thr649Ser	p.T649S	ENST00000257290	NM_006206.4	649	aCt/aGt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245440	153245440	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			436	163	402	0	ENST00000281708.4:c.1751C>A	p.Thr584Lys	p.T584K	ENST00000281708	NM_033632.3	584	aCa/aAa																																																																														
TERT	0	MSKCC	GRCh37	5	1294207	1294207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			473	87	253	0	ENST00000310581.5:c.794C>A	p.Pro265Gln	p.P265Q	ENST00000310581	NM_198253.2	265	cCg/cAg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163641	32163641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			390	52	252	0	ENST00000375023.3:c.5585G>A	p.Arg1862Gln	p.R1862Q	ENST00000375023	NM_004557.3	1862	cGg/cAg																																																																														
LATS1	0	MSKCC	GRCh37	6	150005017	150005017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			574	92	378	0	ENST00000253339.5:c.1208G>A	p.Gly403Glu	p.G403E	ENST00000253339		403	gGa/gAa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468275	50468275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			574	95	300	0	ENST00000331340.3:c.1510G>A	p.Glu504Lys	p.E504K	ENST00000331340	NM_006060.4	504	Gag/Aag																																																																														
MET	0	MSKCC	GRCh37	7	116411579	116411579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			616	82	334	1	ENST00000397752.3:c.2758C>T	p.Leu920Phe	p.L920F	ENST00000397752	NM_000245.2	920	Ctt/Ttt																																																																														
SMO	0	MSKCC	GRCh37	7	128846386	128846386	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			817	134	434	0	ENST00000249373.3:c.1222A>G	p.Ile408Val	p.I408V	ENST00000249373	NM_005631.4	408	Atc/Gtc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114917788	114917788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			860	51	525	1	ENST00000543371.1:c.1278G>C	p.Lys426Asn	p.K426N	ENST00000543371	NM_001198531.1	426	aaG/aaC																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911201	32911201	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			973	59	800	1	ENST00000380152.3:c.2709A>T	p.Leu903Phe	p.L903F	ENST00000380152		903	ttA/ttT																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061459	38061459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			743	57	350	0	ENST00000250448.2:c.530C>T	p.Ser177Leu	p.S177L	ENST00000250448	NM_004496.3	177	tCg/tTg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81942053	81942053	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	153	690	0	ENST00000359376.3:c.1590G>C	p.Glu530Asp	p.E530D	ENST00000359376	NM_002661.3	530	gaG/gaC																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350623	89350623	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1472	196	1005	0	ENST00000301030.4:c.2327T>C	p.Leu776Ser	p.L776S	ENST00000301030	NM_001256183.1	776	tTa/tCa																																																																														
FANCA	0	MSKCC	GRCh37	16	89862427	89862427	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			640	110	403	0	ENST00000389301.3:c.894-1G>A		p.X298_splice	ENST00000389301	NM_000135.2	298																																																																															
RAD51C	0	MSKCC	GRCh37	17	56774152	56774152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			804	133	516	1	ENST00000337432.4:c.503G>A	p.Arg168Lys	p.R168K	ENST00000337432	NM_058216.2	168	aGa/aAa																																																																														
ERCC2	0	MSKCC	GRCh37	19	45872366	45872366	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			825	167	442	0	ENST00000391945.4:c.145A>G	p.Thr49Ala	p.T49A	ENST00000391945	NM_000400.3	49	Aca/Gca																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42851195	42851195	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			559	39	355	0	ENST00000398585.3:c.698C>G	p.Ser233Cys	p.S233C	ENST00000398585	NM_001135099.1	233	tCt/tGt																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056613	26056636	+	inframe_deletion	In_Frame_Del	DEL	GCAGGAGGCGCGGCAGCGGGAGCG	GCAGGAGGCGCGGCAGCGGGAGCG	-			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			268	46	92	0	ENST00000343677.2:c.21_44delCGCTCCCGCTGCCGCGCCTCCTGC	p.Ala8_Ala15del	p.A8_A15del	ENST00000343677	NM_005319.3	7	gcCGCTCCCGCTGCCGCGCCTCCTGCg/gcg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922703	44922703	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			454	143	295	0	ENST00000377967.4:c.1565delG	p.Gly522GlufsTer26	p.G522Efs*26	ENST00000377967	NM_021140.2	522	Gga/ga																																																																														
FUBP1	0	MSKCC	GRCh37	1	78429390	78429390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	101	345	0	ENST00000370768.2:c.1052C>G	p.Pro351Arg	p.P351R	ENST00000370768	NM_003902.3	351	cCt/cGt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	100	316	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
BAP1	0	MSKCC	GRCh37	3	52440343	52440343	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	517	556	0	ENST00000460680.1:c.709del	p.Arg237AlafsTer12	p.R237Afs*12	ENST00000460680	NM_004656.3	237	Cgc/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	125	781	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176012877	176012877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	141	935	0	ENST00000367669.3:c.1499G>A	p.Gly500Glu	p.G500E	ENST00000367669	NM_022457.5	500	gGa/gAa																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056314	26056314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	76	493	0	ENST00000343677.2:c.343G>A	p.Glu115Lys	p.E115K	ENST00000343677	NM_005319.3	115	Gaa/Aaa																																																																														
LATS1	0	MSKCC	GRCh37	6	150001155	150001155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	177	957	0	ENST00000253339.5:c.2449G>A	p.Glu817Lys	p.E817K	ENST00000253339		817	Gaa/Aaa																																																																														
MLL3	0	MSKCC	GRCh37	7	151946988	151946988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	126	800	1	ENST00000262189.6:c.1786C>G	p.Leu596Val	p.L596V	ENST00000262189	NM_170606.2	596	Ctt/Gtt																																																																														
MLL3	0	MSKCC	GRCh37	7	151946996	151946996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	124	801	1	ENST00000262189.6:c.1778C>T	p.Ser593Leu	p.S593L	ENST00000262189	NM_170606.2	593	tCa/tTa																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195379	102195379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	235	1161	0	ENST00000263464.3:c.139G>C	p.Glu47Gln	p.E47Q	ENST00000263464	NM_001165.4	47	Gaa/Caa																																																																														
CDH1	0	MSKCC	GRCh37	16	68846135	68846135	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	96	795	0	ENST00000261769.5:c.1106A>C	p.Asn369Thr	p.N369T	ENST00000261769	NM_004360.3	369	aAc/aCc																																																																														
GPS2	0	MSKCC	GRCh37	17	7216714	7216714	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	193	1253	0	ENST00000380728.2:c.709C>T	p.Gln237Ter	p.Q237*	ENST00000380728		237	Cag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	82	345	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88476243	88476243	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	61	346	0	ENST00000360948.2:c.1889G>A	p.Arg630Lys	p.R630K	ENST00000360948	NM_001012338.2	630	aGg/aAg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851285	63851285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	36	253	1	ENST00000279873.7:c.2063C>T	p.Ser688Phe	p.S688F	ENST00000279873	NM_032199.2	688	tCc/tTc																																																																														
TP63	0	MSKCC	GRCh37	3	189456447	189456447	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	67	403	0	ENST00000264731.3:c.208C>T	p.Gln70Ter	p.Q70*	ENST00000264731	NM_003722.4	70	Cag/Tag																																																																														
ASXL2	0	MSKCC	GRCh37	2	25976443	25976443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	56	541	1	ENST00000435504.4:c.1102C>T	p.Pro368Ser	p.P368S	ENST00000435504		368	Cca/Tca																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111881680	111881680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	42	341	0	ENST00000393256.3:c.358C>T	p.Pro120Ser	p.P120S	ENST00000393256	NM_006538.4	120	Cct/Tct																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553489	106553489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	24	194	0	ENST00000369096.4:c.1454G>A	p.Arg485Lys	p.R485K	ENST00000369096	NM_001198.3	485	aGg/aAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692910	89692910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	48	261	0	ENST00000371953.3:c.394G>A	p.Gly132Ser	p.G132S	ENST00000371953	NM_000314.4	132	Ggt/Agt																																																																														
MDM2	0	MSKCC	GRCh37	12	69233094	69233094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	35	391	1	ENST00000462284.1:c.959C>T	p.Pro320Leu	p.P320L	ENST00000462284	NM_002392.5	320	cCc/cTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934954	9934954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	34	263	0	ENST00000330684.3:c.1336A>G	p.Thr446Ala	p.T446A	ENST00000330684	NM_001134407.1	446	Acc/Gcc																																																																														
KLF4	0	MSKCC	GRCh37	9	110249405	110249406	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0005673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1424	79	725	2	ENST00000374672.4:c.1167_1168delinsTT	p.Arg390Trp	p.R390W	ENST00000374672	NM_004235.4	389	ccCCgg/ccTTgg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212570097	212570097	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	37	311	0	ENST00000342788.4:c.1144G>T	p.Glu382Ter	p.E382*	ENST00000342788	NM_005235.2	382	Gaa/Taa																																																																														
RHOA	387	MSKCC	GRCh37	3	49412946	49412946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	311	628	0	ENST00000418115.1:c.77G>A	p.Ser26Asn	p.S26N	ENST00000418115	NM_001664.2	26	aGc/aAc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449521	149449521	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	95	527	0	ENST00000286301.3:c.1425G>C	p.Glu475Asp	p.E475D	ENST00000286301	NM_005211.3	475	gaG/gaC																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	161	477	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24176330	24176330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	175	500	0	ENST00000263121.7:c.1121G>A	p.Arg374Gln	p.R374Q	ENST00000263121	NM_003073.3	374	cGg/cAg																																																																														
GATA1	0	MSKCC	GRCh37	X	48650367	48650367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	149	326	0	ENST00000376670.3:c.337C>T	p.Arg113Cys	p.R113C	ENST00000376670	NM_002049.3	113	Cgc/Tgc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245586	41245587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	72	510	4	ENST00000357654.3:c.1961dup	p.Tyr655ValfsTer18	p.Y655Vfs*18	ENST00000357654	NM_007294.3	654	aag/aaAg																																																																														
RNF43	0	MSKCC	GRCh37	17	56492732	56492732	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	562	511	1	ENST00000407977.2:c.207delT	p.Phe69LeufsTer7	p.F69Lfs*7	ENST00000407977		69	ttT/tt																																																																														
KIT	0	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	37	671	0	ENST00000288135.5:c.2466T>G	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaG																																																																														
BCOR	0	MSKCC	GRCh37	X	39934291	39934291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	29	547	0	ENST00000378444.4:c.308A>G	p.Glu103Gly	p.E103G	ENST00000378444	NM_001123385.1	103	gAg/gGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	417	498	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	164	483	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
YAP1	0	MSKCC	GRCh37	11	102056778	102056778	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	168	457	0	ENST00000282441.5:c.718A>G	p.Met240Val	p.M240V	ENST00000282441	NM_001130145.2	240	Atg/Gtg																																																																														
MLL2	0	MSKCC	GRCh37	12	49416533	49416534	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0005754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	204	521	0	ENST00000301067.7:c.16175_16177dup	p.Arg5392_Thr5393insSer	p.R5392_T5393insS	ENST00000301067	NM_003482.3	5393	acc/aGCAcc																																																																														
TSHR	0	MSKCC	GRCh37	14	81610357	81610358	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0005754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	62	566	0	ENST00000298171.2:c.1955_1956delinsAC	p.Pro652His	p.P652H	ENST00000298171	NM_000369.2	652	cCT/cAC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	93	313	0				ENST00000310581	NM_198253.2																																																																																
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	104	767	0	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	112	571	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac																																																																														
EPHB1	0	MSKCC	GRCh37	3	134825386	134825386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	109	669	0	ENST00000398015.3:c.902G>A	p.Cys301Tyr	p.C301Y	ENST00000398015	NM_004441.4	301	tGc/tAc																																																																														
KIT	0	MSKCC	GRCh37	4	55593582	55593587	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AAACCC	AAACCC	-			P-0005780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	392	443	1	ENST00000288135.5:c.1649_1654del	p.Lys550_Pro551del	p.K550_P551del	ENST00000288135	NM_000222.2	550	AAACCC/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	329	565	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134884909	134884909	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	191	420	3	ENST00000398015.3:c.1685T>C	p.Val562Ala	p.V562A	ENST00000398015	NM_004441.4	562	gTc/gCc																																																																														
APC	0	MSKCC	GRCh37	5	112176263	112176263	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	98	487	0	ENST00000257430.4:c.4972A>C	p.Ser1658Arg	p.S1658R	ENST00000257430	NM_000038.5	1658	Agt/Cgt																																																																														
KDM5A	0	MSKCC	GRCh37	12	404935	404935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	25	431	0	ENST00000399788.2:c.4259C>G	p.Pro1420Arg	p.P1420R	ENST00000399788	NM_001042603.1	1420	cCt/cGt																																																																														
MLL2	0	MSKCC	GRCh37	12	49446426	49446426	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	194	454	0	ENST00000301067.7:c.1179A>C	p.Gln393His	p.Q393H	ENST00000301067	NM_003482.3	393	caA/caC																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599846	10599878	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCCCCGCCCCCAGGGCCTCACCAAGGACGTAG	TTCCCCGCCCCCAGGGCCTCACCAAGGACGTAG	-			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	137	437	0	ENST00000171111.5:c.1698_1708+22del		p.X566_splice	ENST00000171111	NM_203500.1	566																																																																															
RB1	0	MSKCC	GRCh37	13	48919322	48919337	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AGCAAATTGGAAAGGT	AGCAAATTGGAAAGGT	-			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	70	289	0	ENST00000267163.4:c.488_500+3del		p.X163_splice	ENST00000267163	NM_000321.2	163																																																																															
KEAP1	0	MSKCC	GRCh37	19	10602847	10602865	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGACTCGCAGCGCACGT	TCGGACTCGCAGCGCACGT	-			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	87	525	0	ENST00000171111.5:c.713_731del	p.Asn238ArgfsTer33	p.N238Rfs*33	ENST00000171111	NM_203500.1	238	aACGTGCGCTGCGAGTCCGAg/ag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602574	10602575	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGT			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	50	464	0	ENST00000171111.5:c.1001_1003dup	p.Tyr334dup	p.Y334dup	ENST00000171111	NM_203500.1	334	ttc/tACTtc																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138192544	138192551	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGGAGA	TCGGGAGA	-			P-0005790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	279	431	0	ENST00000237289.4:c.182_189del	p.Arg61HisfsTer37	p.R61Hfs*37	ENST00000237289	NM_001270507.1	60	ttTCGGGAGAtc/tttc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	147	635	0	ENST00000171111.5:c.779G>T	p.Arg260Leu	p.R260L	ENST00000171111	NM_203500.1	260	cGa/cTa																																																																														
VHL	0	MSKCC	GRCh37	3	10191491	10191491	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	120	527	0	ENST00000256474.2:c.484T>C	p.Cys162Arg	p.C162R	ENST00000256474	NM_000551.3	162	Tgc/Cgc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66242735	66242735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	180	640	0	ENST00000273854.3:c.1837G>T	p.Ala613Ser	p.A613S	ENST00000273854	NM_004439.5	613	Gcc/Tcc																																																																														
MDM2	0	MSKCC	GRCh37	12	69233142	69233142	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	198	681	0	ENST00000462284.1:c.1007T>G	p.Leu336Arg	p.L336R	ENST00000462284	NM_002392.5	336	cTt/cGt																																																																														
SRC	0	MSKCC	GRCh37	20	36026247	36026247	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	127	727	0	ENST00000358208.4:c.850del	p.Val284CysfsTer17	p.V284Cfs*17	ENST00000358208		283	gaG/ga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	59	284	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	129	546	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
INSR	0	MSKCC	GRCh37	19	7152908	7152908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	104	602	0	ENST00000302850.5:c.2060C>A	p.Pro687Gln	p.P687Q	ENST00000302850	NM_000208.2	687	cCa/cAa																																																																														
GATA3	0	MSKCC	GRCh37	10	8111452	8111453	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	93	608	0	ENST00000346208.3:c.939dup	p.Gly314ArgfsTer38	p.G314Rfs*38	ENST00000346208		313	gca/gcAa																																																																														
SOX2	0	MSKCC	GRCh37	3	181430792	181430792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	202	491	0	ENST00000325404.1:c.644C>A	p.Thr215Asn	p.T215N	ENST00000325404	NM_003106.3	215	aCc/aAc																																																																														
CBL	0	MSKCC	GRCh37	11	119158617	119158617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	66	216	0	ENST00000264033.4:c.1997C>T	p.Pro666Leu	p.P666L	ENST00000264033	NM_005188.3	666	cCt/cTt																																																																														
CDK8	0	MSKCC	GRCh37	13	26975684	26975684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	304	499	1	ENST00000381527.3:c.1192G>A	p.Gly398Arg	p.G398R	ENST00000381527	NM_001260.1	398	Gga/Aga																																																																														
ARAF	0	MSKCC	GRCh37	X	47430815	47430815	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	154	236	0	ENST00000377045.4:c.1781del	p.Leu594CysfsTer?	p.L594Cfs*?	ENST00000377045	NM_001654.4	594	Ttg/tg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867167	45867168	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	AA			P-0005878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	65	286	0	ENST00000391945.4:c.951_952delinsTT	p.Glu317_Ala318delinsAspSer	p.E317_A318delinsDS	ENST00000391945	NM_000400.3	317	gaGGca/gaTTca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139417580	139417580	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	302	636	0	ENST00000277541.6:c.464G>C	p.Cys155Ser	p.C155S	ENST00000277541	NM_017617.3	155	tGc/tCc																																																																														
INSR	0	MSKCC	GRCh37	19	7184388	7184388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	261	490	0	ENST00000302850.5:c.913G>A	p.Val305Ile	p.V305I	ENST00000302850	NM_000208.2	305	Gtc/Atc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803516	1803564	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGGTGAGGGAGGGGGTGGCCCCTGAGCGTCATCTGCCCCCACAGAGC	GGTGGTGAGGGAGGGGGTGGCCCCTGAGCGTCATCTGCCCCCACAGAGC	-			P-0005898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	60	172	2	ENST00000260795.2:c.740-45_743del		p.X247_splice	ENST00000260795		247																																																																															
NFKBIA	0	MSKCC	GRCh37	14	35871987	35871988	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAT			P-0005898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1393	328	805	0	ENST00000216797.5:c.623_625dup	p.Asp208dup	p.D208dup	ENST00000216797	NM_020529.2	208	gtc/gATGtc																																																																														
DAXX	0	MSKCC	GRCh37	6	33289242	33289242	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	418	419	0	ENST00000374542.5:c.310G>T	p.Glu104Ter	p.E104*	ENST00000374542	NM_001141970.1	104	Gag/Tag																																																																														
MLL3	0	MSKCC	GRCh37	7	151855967	151855967	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	106	388	2	ENST00000262189.6:c.11651del	p.Thr3884SerfsTer5	p.T3884Sfs*5	ENST00000262189	NM_170606.2	3884	aCg/ag																																																																														
MEN1	0	MSKCC	GRCh37	11	64572596	64572596	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	397	464	0	ENST00000337652.1:c.1275del	p.Cys426AlafsTer24	p.C426Afs*24	ENST00000337652	NM_130803.2	425	atC/at																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	22	267	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89653857	89653857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	64	363	0	ENST00000371953.3:c.155del	p.Asp52ValfsTer2	p.D52Vfs*2	ENST00000371953	NM_000314.4	52	gAt/gt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178056	56178071	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCCTGCAGAATACC	TTCCCTGCAGAATACC	-			P-0005932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	70	271	0	ENST00000399503.3:c.3032_3047del	p.Pro1011LeufsTer66	p.P1011Lfs*66	ENST00000399503	NM_005921.1	1010	aTTCCCTGCAGAATACCt/at																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0005942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	383	580	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
CARD11	0	MSKCC	GRCh37	7	2984084	2984084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	66	324	0	ENST00000396946.4:c.446G>C	p.Arg149Pro	p.R149P	ENST00000396946	NM_032415.4	149	cGc/cCc																																																																														
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	231	432	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
STK11	0	MSKCC	GRCh37	19	1220641	1220641	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	304	525	0	ENST00000326873.7:c.659A>C	p.Gln220Pro	p.Q220P	ENST00000326873	NM_000455.4	220	cAg/cCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578378	7578379	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0005942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	84	321	0	ENST00000269305.4:c.550_551dup	p.Asp184GlufsTer64	p.D184Efs*64	ENST00000269305	NM_001126112.2	184	gat/gaGAt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735466	40735466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182388300		P-0005949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	138	546	2	ENST00000373198.4:c.3407G>A	p.Arg1136His	p.R1136H	ENST00000373198	NM_133170.3	1136	cGt/cAt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89259335	89259335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750779844		P-0005949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	136	557	0	ENST00000336596.2:c.479G>A	p.Arg160His	p.R160H	ENST00000336596	NM_005233.5	160	cGt/cAt																																																																														
SOX17	0	MSKCC	GRCh37	8	55371662	55371662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	235	544	1	ENST00000297316.4:c.352G>A	p.Val118Met	p.V118M	ENST00000297316	NM_022454.3	118	Gtg/Atg																																																																														
PTPN11	0	MSKCC	GRCh37	12	112884175	112884175	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	45	355	0	ENST00000351677.2:c.110A>C	p.Asn37Thr	p.N37T	ENST00000351677	NM_002834.3	37	aAc/aCc																																																																														
BLM	0	MSKCC	GRCh37	15	91295029	91295029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	30	429	0	ENST00000355112.3:c.812A>G	p.Lys271Arg	p.K271R	ENST00000355112	NM_000057.2	271	aAg/aGg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16055263	16055263	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	89	480	0	ENST00000268712.3:c.839A>T	p.Lys280Met	p.K280M	ENST00000268712	NM_006311.3	280	aAg/aTg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	331	499	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ATM	0	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	51	559	0	ENST00000278616.4:c.8631G>C	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttC																																																																														
NTRK3	0	MSKCC	GRCh37	15	88476310	88476310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	54	611	2	ENST00000360948.2:c.1822G>A	p.Gly608Ser	p.G608S	ENST00000360948	NM_001012338.2	608	Ggc/Agc																																																																														
MST1	0	MSKCC	GRCh37	3	49725264	49725264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142358513		P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	14	132	0	ENST00000449682.2:c.161C>T	p.Ala54Val	p.A54V	ENST00000449682	NM_020998.3	54	gCg/gTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636796	8636796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	118	617	0	ENST00000356435.5:c.113G>T	p.Gly38Val	p.G38V	ENST00000356435		38	gGc/gTc																																																																														
RET	0	MSKCC	GRCh37	10	43622074	43622074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	42	561	1	ENST00000355710.3:c.3091G>T	p.Asp1031Tyr	p.D1031Y	ENST00000355710	NM_020975.4	1031	Gac/Tac																																																																														
ATM	0	MSKCC	GRCh37	11	108114679	108114679	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	40	210	0	ENST00000278616.4:c.497-1G>T		p.X166_splice	ENST00000278616	NM_000051.3	166																																																																															
ANKRD11	0	MSKCC	GRCh37	16	89350270	89350270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	90	966	2	ENST00000301030.4:c.2680G>A	p.Ala894Thr	p.A894T	ENST00000301030	NM_001256183.1	894	Gcc/Acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	22	286	0				ENST00000310581	NM_198253.2																																																																																
VHL	0	MSKCC	GRCh37	3	10183787	10183787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	30	414	0	ENST00000256474.2:c.256C>T	p.Pro86Ser	p.P86S	ENST00000256474	NM_000551.3	86	Ccc/Tcc																																																																														
MTOR	0	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	47	626	0	ENST00000361445.4:c.7280T>G	p.Leu2427Arg	p.L2427R	ENST00000361445	NM_004958.3	2427	cTg/cGg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462051	120462051	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	101	592	1	ENST00000256646.2:c.5665C>G	p.Arg1889Gly	p.R1889G	ENST00000256646	NM_024408.3	1889	Cgg/Ggg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52682417	52682418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0005965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	85	610	0	ENST00000394830.3:c.755_756del	p.Ile252ArgfsTer11	p.I252Rfs*11	ENST00000394830	NM_018313.4	252	aTA/a																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	73	352	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144442	11144442	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	154	451	0	ENST00000344626.4:c.3775-1G>A		p.X1259_splice	ENST00000344626	NM_003072.3	1259																																																																															
PBRM1	0	MSKCC	GRCh37	3	52678783	52678784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	84	271	0	ENST00000394830.3:c.835dupA	p.Ile279AsnfsTer8	p.I279Nfs*8	ENST00000394830	NM_018313.4	279	ata/aAta																																																																														
NSD1	0	MSKCC	GRCh37	5	176639139	176639139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	48	219	0	ENST00000439151.2:c.3739A>G	p.Met1247Val	p.M1247V	ENST00000439151	NM_022455.4	1247	Atg/Gtg																																																																														
SUFU	0	MSKCC	GRCh37	10	104377169	104377169	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	143	689	0	ENST00000369902.3:c.1280A>T	p.His427Leu	p.H427L	ENST00000369902	NM_016169.3	427	cAt/cTt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244838	41244838	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	82	389	0	ENST00000357654.3:c.2710G>T	p.Glu904Ter	p.E904*	ENST00000357654	NM_007294.3	904	Gaa/Taa																																																																														
BRIP1	0	MSKCC	GRCh37	17	59853819	59853819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	140	639	0	ENST00000259008.2:c.2040G>T	p.Leu680Phe	p.L680F	ENST00000259008	NM_032043.2	680	ttG/ttT																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144058	11144058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	132	626	0	ENST00000344626.4:c.3639G>C	p.Lys1213Asn	p.K1213N	ENST00000344626	NM_003072.3	1213	aaG/aaC																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144802	11144802	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	100	457	0	ENST00000344626.4:c.3877G>T	p.Glu1293Ter	p.E1293*	ENST00000344626	NM_003072.3	1293	Gaa/Taa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602280	10602280	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	97	425	0	ENST00000171111.5:c.1298del	p.Gly433AlafsTer25	p.G433Afs*25	ENST00000171111	NM_203500.1	433	gGc/gc																																																																														
STK11	6794	MSKCC	GRCh37	19	1207092	1207092	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	138	588	0	ENST00000326873.7:c.180del	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/ta																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	442	573	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	96	289	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	730	350	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MSH2	0	MSKCC	GRCh37	2	47672732	47672732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	492	608	0	ENST00000233146.2:c.1322C>A	p.Thr441Asn	p.T441N	ENST00000233146	NM_000251.2	441	aCt/aAt																																																																														
TSHR	0	MSKCC	GRCh37	14	81574742	81574742	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	272	618	0	ENST00000298171.2:c.638T>A	p.Leu213Gln	p.L213Q	ENST00000298171	NM_000369.2	213	cTg/cAg																																																																														
BLM	0	MSKCC	GRCh37	15	91312750	91312750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	210	594	0	ENST00000355112.3:c.2489C>T	p.Thr830Met	p.T830M	ENST00000355112	NM_000057.2	830	aCg/aTg																																																																														
STAG2	0	MSKCC	GRCh37	X	123176464	123176464	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1539	374	712	0	ENST00000218089.9:c.431T>C	p.Ile144Thr	p.I144T	ENST00000218089	NM_001042749.1	144	aTa/aCa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830416	72830417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	223	572	0	ENST00000268489.5:c.6164dup	p.Pro2056AlafsTer100	p.P2056Afs*100	ENST00000268489	NM_006885.3	2055	ccg/ccCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0005995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	160	501	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32178569	32178569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	117	479	0	ENST00000375023.3:c.2825G>T	p.Gly942Val	p.G942V	ENST00000375023	NM_004557.3	942	gGg/gTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391890	139391890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	113	479	2	ENST00000277541.6:c.6301G>A	p.Ala2101Thr	p.A2101T	ENST00000277541	NM_017617.3	2101	Gca/Aca																																																																														
ARID2	0	MSKCC	GRCh37	12	46287294	46287294	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	111	453	0	ENST00000334344.6:c.5239G>T	p.Gly1747Ter	p.G1747*	ENST00000334344	NM_152641.2	1747	Gga/Tga																																																																														
TRAF7	0	MSKCC	GRCh37	16	2218083	2218083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1273	151	586	0	ENST00000326181.6:c.145G>T	p.Gly49Trp	p.G49W	ENST00000326181	NM_032271.2	49	Ggg/Tgg																																																																														
POLD1	0	MSKCC	GRCh37	19	50909712	50909712	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	70	624	0	ENST00000440232.2:c.1432A>C	p.Ser478Arg	p.S478R	ENST00000440232	NM_002691.3	478	Agc/Cgc																																																																														
PGR	0	MSKCC	GRCh37	11	100999449	100999450	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0005995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	160	720	1	ENST00000325455.5:c.352_353delCT	p.Leu118ValfsTer65	p.L118Vfs*65	ENST00000325455	NM_001202474.3	118	CTg/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	32	402	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578238	7578255	+	inframe_deletion	In_Frame_Del	DEL	TCCACACGCAAATTTCCT	TCCACACGCAAATTTCCT	-			P-0006056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	41	571	0	ENST00000269305.4:c.594_611del	p.Gly199_Glu204del	p.G199_E204del	ENST00000269305	NM_001126112.2	198	gaAGGAAATTTGCGTGTGGAg/gag																																																																														
FGFR2	0	MSKCC	GRCh37	10	123324960	123324960	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	38	596	0	ENST00000358487.5:c.368A>T	p.Asn123Ile	p.N123I	ENST00000358487	NM_000141.4	123	aAt/aTt																																																																														
EP300	0	MSKCC	GRCh37	22	41513341	41513341	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	74	571	0	ENST00000263253.7:c.245C>A	p.Ser82Ter	p.S82*	ENST00000263253	NM_001429.3	82	tCa/tAa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132485	11132485	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	90	624	1	ENST00000344626.4:c.2701del	p.Tyr901MetfsTer9	p.Y901Mfs*9	ENST00000344626	NM_003072.3	901	Tat/at																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0006069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	96	239	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64129169	64129169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	257	484	1	ENST00000334205.4:c.707C>T	p.Ser236Leu	p.S236L	ENST00000334205	NM_003942.2	236	tCg/tTg																																																																														
MST1R	0	MSKCC	GRCh37	3	49940100	49940100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	355	631	2	ENST00000296474.3:c.943G>A	p.Gly315Arg	p.G315R	ENST00000296474	NM_002447.2	315	Gga/Aga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	88	496	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0006072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	154	825	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
GLI1	0	MSKCC	GRCh37	12	57860053	57860053	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200444628		P-0006072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1252	114	1078	7	ENST00000228682.2:c.793C>T	p.Arg265Trp	p.R265W	ENST00000228682	NM_005269.2	265	Cgg/Tgg																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0006085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	90	297	0	ENST00000397752.3:c.3028+1del		p.D1010fs	ENST00000397752	NM_000245.2	1010	Gat/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	245	377	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	106	334	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc																																																																														
ALK	0	MSKCC	GRCh37	2	29436901	29436901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	268	550	0	ENST00000389048.3:c.3692G>T	p.Arg1231Leu	p.R1231L	ENST00000389048	NM_004304.4	1231	cGg/cTg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856568	111856568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	46	186	2	ENST00000341259.2:c.619G>A	p.Asp207Asn	p.D207N	ENST00000341259	NM_005475.2	207	Gac/Aac																																																																														
SOX9	0	MSKCC	GRCh37	17	70120016	70120016	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	33	58	0	ENST00000245479.2:c.1018C>T	p.Gln340Ter	p.Q340*	ENST00000245479	NM_000346.3	340	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112174301	112174311	+	frameshift_variant	Frame_Shift_Del	DEL	CTAGCCCATAA	CTAGCCCATAA	-			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	91	402	0	ENST00000257430.4:c.3010_3020del	p.Leu1004AsnfsTer3	p.L1004Nfs*3	ENST00000257430	NM_000038.5	1004	CTAGCCCATAAa/a																																																																														
TP53	0	MSKCC	GRCh37	17	7578248	7578249	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	285	572	0	ENST00000269305.4:c.599_600dup	p.Leu201IlefsTer47	p.L201Ifs*47	ENST00000269305	NM_001126112.2	200	-/AT																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774771	73774774	+	frameshift_variant	Frame_Shift_Del	DEL	CGAA	CGAA	-			P-0006110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	214	391	0	ENST00000254810.4:c.313_316del	p.Phe105LysfsTer33	p.F105Kfs*33	ENST00000254810	NM_005324.3	105	TTCGaa/aa																																																																														
GATA3	0	MSKCC	GRCh37	10	8115853	8115854	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	131	494	0	ENST00000346208.3:c.1200dup	p.Ser401ValfsTer106	p.S401Vfs*106	ENST00000346208		400	atg/atGg																																																																														
MLL3	0	MSKCC	GRCh37	7	151877154	151877154	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	47	346	1	ENST00000262189.6:c.7207C>T	p.Arg2403Ter	p.R2403*	ENST00000262189	NM_170606.2	2403	Cga/Tga																																																																														
MLL3	0	MSKCC	GRCh37	7	151900033	151900037	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAA	GGAAA	-			P-0006137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	77	439	0	ENST00000262189.6:c.4074_4078del	p.Phe1359CysfsTer17	p.F1359Cfs*17	ENST00000262189	NM_170606.2	1358	acTTTCCct/acct																																																																														
MED12	0	MSKCC	GRCh37	X	70345211	70345214	+	frameshift_variant	Frame_Shift_Del	DEL	GCAG	GCAG	-			P-0006137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	49	614	0	ENST00000374080.3:c.2237_2240del	p.Cys746SerfsTer33	p.C746Sfs*33	ENST00000374080		746	tGCAGc/tc																																																																														
PMS2	0	MSKCC	GRCh37	7	6048644	6048644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	136	396	2	ENST00000265849.7:c.7C>T	p.Arg3Ter	p.R3*	ENST00000265849	NM_000535.5	3	Cga/Tga																																																																														
MST1R	0	MSKCC	GRCh37	3	49927986	49927986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	227	580	0	ENST00000296474.3:c.3742C>T	p.Arg1248Cys	p.R1248C	ENST00000296474	NM_002447.2	1248	Cgc/Tgc																																																																														
EGFR	0	MSKCC	GRCh37	7	55273029	55273029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	148	441	0	ENST00000275493.2:c.3352G>T	p.Ala1118Ser	p.A1118S	ENST00000275493	NM_005228.3	1118	Gcg/Tcg																																																																														
PALB2	0	MSKCC	GRCh37	16	23635329	23635329	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	94	408	0	ENST00000261584.4:c.2834+1G>T		p.X945_splice	ENST00000261584	NM_024675.3	945																																																																															
CDKN2A	0	MSKCC	GRCh37	9	21971198	21971199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	48	157	0	ENST00000304494.5:c.159dup	p.Met54AspfsTer66	p.M54Dfs*66	ENST00000304494	NM_000077.4	53	-/G																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971198	21971199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	48	157	0	ENST00000304494.5:c.159dup	p.Met54AspfsTer66	p.M54Dfs*66	ENST00000304494	NM_000077.4	53	-/G																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971198	21971199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	48	157	0	ENST00000304494.5:c.159dup	p.Met54AspfsTer66	p.M54Dfs*66	ENST00000304494	NM_000077.4	53	-/G																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578458	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0006150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	126	480	1	ENST00000269305.4:c.472_473delinsTT	p.Arg158Phe	p.R158F	ENST00000269305	NM_001126112.2	158	CGc/TTc																																																																														
AKT3	0	MSKCC	GRCh37	1	243777036	243777036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	267	291	1	ENST00000263826.5:c.633G>T	p.Leu211Phe	p.L211F	ENST00000263826	NM_005465.4	211	ttG/ttT																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402466	139402466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	385	493	0	ENST00000277541.6:c.3451C>T	p.Pro1151Ser	p.P1151S	ENST00000277541	NM_017617.3	1151	Ccc/Tcc																																																																														
MLL	0	MSKCC	GRCh37	11	118363805	118363805	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	354	397	0	ENST00000534358.1:c.5038G>T	p.Glu1680Ter	p.E1680*	ENST00000534358	NM_005933.3	1680	Gag/Tag																																																																														
STAT5B	0	MSKCC	GRCh37	17	40359654	40359654	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	597	649	0	ENST00000293328.3:c.1999A>G	p.Ile667Val	p.I667V	ENST00000293328	NM_012448.3	667	Atc/Gtc																																																																														
CIC	0	MSKCC	GRCh37	19	42798379	42798379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	388	380	0	ENST00000575354.2:c.4250G>T	p.Arg1417Leu	p.R1417L	ENST00000575354	NM_015125.3	1417	cGc/cTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	53	254	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0006163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	77	422	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
JAK2	0	MSKCC	GRCh37	9	5089775	5089775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	41	481	0	ENST00000381652.3:c.2673C>G	p.His891Gln	p.H891Q	ENST00000381652	NM_004972.3	891	caC/caG																																																																														
RBM10	0	MSKCC	GRCh37	X	47039327	47039327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	73	248	0	ENST00000329236.7:c.719T>C	p.Leu240Pro	p.L240P	ENST00000329236	NM_001204466.1	240	cTg/cCg																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20148725	20148726	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GC	GC	AA			P-0006163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			18	115	206	0	ENST00000379607.5:c.338-1_338delinsTT		p.X113_splice	ENST00000379607	NM_001412.3	113																																																																															
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	54	490	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	68	451	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	246	785	5	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	20	109	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	85	414	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	91	411	0	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																																																														
FLT3	0	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	74	541	0	ENST00000241453.7:c.2955_2956delTC	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	96	533	3	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
FLT4	0	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	54	511	5	ENST00000261937.6:c.1267delC	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857679	9857679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	62	429	0	ENST00000330684.3:c.3722G>A	p.Arg1241Gln	p.R1241Q	ENST00000330684	NM_001134407.1	1241	cGg/cAg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	43	345	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	96	508	1	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																														
MSH6	0	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	83	461	0	ENST00000234420.5:c.3312delT	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																																																														
SPEN	0	MSKCC	GRCh37	1	16202891	16202891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	60	503	0	ENST00000375759.3:c.599G>A	p.Arg200Gln	p.R200Q	ENST00000375759	NM_015001.2	200	cGa/cAa																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798808	45798808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	73	450	0	ENST00000372115.3:c.381G>T	p.Gln127His	p.Q127H	ENST00000372115	NM_001048171.1	127	caG/caT																																																																														
NTRK1	0	MSKCC	GRCh37	1	156845353	156845353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	99	756	0	ENST00000524377.1:c.1396C>A	p.Leu466Met	p.L466M	ENST00000524377	NM_002529.3	466	Ctg/Atg																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612810	228612810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	171	956	2	ENST00000366696.1:c.217C>T	p.Arg73Cys	p.R73C	ENST00000366696	NM_003493.2	73	Cgc/Tgc																																																																														
ASXL2	0	MSKCC	GRCh37	2	26029141	26029141	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	87	503	0	ENST00000435504.4:c.209T>A	p.Ile70Asn	p.I70N	ENST00000435504		70	aTc/aAc																																																																														
GATA2	0	MSKCC	GRCh37	3	128202843	128202843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	49	368	0	ENST00000341105.2:c.877C>T	p.Arg293Trp	p.R293W	ENST00000341105	NM_032638.4	293	Cgg/Tgg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467865	66467865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	104	421	0	ENST00000273854.3:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000273854	NM_004439.5	135	cGg/cAg																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158647	26158647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	15	59	0	ENST00000289316.2:c.250T>C	p.Tyr84His	p.Y84H	ENST00000289316	NM_138720.2	84	Tac/Cac																																																																														
MDC1	0	MSKCC	GRCh37	6	30672233	30672233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	104	769	1	ENST00000376406.3:c.4727C>A	p.Pro1576His	p.P1576H	ENST00000376406	NM_014641.2	1576	cCt/cAt																																																																														
EZH2	0	MSKCC	GRCh37	7	148523705	148523705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	58	359	0	ENST00000320356.2:c.748C>A	p.Gln250Lys	p.Q250K	ENST00000320356	NM_004456.4	250	Cag/Aag																																																																														
MLL3	0	MSKCC	GRCh37	7	151845678	151845678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	68	406	2	ENST00000262189.6:c.13334G>A	p.Gly4445Asp	p.G4445D	ENST00000262189	NM_170606.2	4445	gGt/gAt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8460514	8460514	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	77	459	0	ENST00000356435.5:c.3772C>T	p.Gln1258Ter	p.Q1258*	ENST00000356435		1258	Cag/Tag																																																																														
GNAQ	0	MSKCC	GRCh37	9	80343516	80343516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	57	414	0	ENST00000286548.4:c.803C>T	p.Ser268Leu	p.S268L	ENST00000286548	NM_002072.3	268	tCg/tTg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87636249	87636249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	89	573	0	ENST00000277120.3:c.2414G>A	p.Cys805Tyr	p.C805Y	ENST00000277120		805	tGc/tAc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123353315	123353315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	92	603	0	ENST00000358487.5:c.17G>A	p.Arg6His	p.R6H	ENST00000358487	NM_000141.4	6	cGt/cAt																																																																														
PGR	0	MSKCC	GRCh37	11	100998169	100998169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	95	436	0	ENST00000325455.5:c.1633C>A	p.Leu545Met	p.L545M	ENST00000325455	NM_001202474.3	545	Ctg/Atg																																																																														
ATM	0	MSKCC	GRCh37	11	108168061	108168061	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	86	473	0	ENST00000278616.4:c.4957C>T	p.Gln1653Ter	p.Q1653*	ENST00000278616	NM_000051.3	1653	Cag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108225561	108225561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	86	464	0	ENST00000278616.4:c.8810T>C	p.Val2937Ala	p.V2937A	ENST00000278616	NM_000051.3	2937	gTg/gCg																																																																														
ETV6	0	MSKCC	GRCh37	12	12038875	12038875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	102	452	0	ENST00000396373.4:c.1168A>G	p.Thr390Ala	p.T390A	ENST00000396373	NM_001987.4	390	Acc/Gcc																																																																														
MLL2	0	MSKCC	GRCh37	12	49449088	49449088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	25	431	1	ENST00000301067.7:c.20C>A	p.Ala7Asp	p.A7D	ENST00000301067	NM_003482.3	7	gCt/gAt																																																																														
IRS2	0	MSKCC	GRCh37	13	110435210	110435210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	61	274	1	ENST00000375856.3:c.3191C>T	p.Ser1064Leu	p.S1064L	ENST00000375856	NM_003749.2	1064	tCg/tTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9928089	9928089	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	64	461	0	ENST00000330684.3:c.1652-2A>G		p.X551_splice	ENST00000330684	NM_001134407.1	551																																																																															
ZFHX3	0	MSKCC	GRCh37	16	72829974	72829974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	132	845	2	ENST00000268489.5:c.6607C>T	p.Arg2203Cys	p.R2203C	ENST00000268489	NM_006885.3	2203	Cgt/Tgt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533696	63533696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	63	500	0	ENST00000307078.5:c.1458G>T	p.Lys486Asn	p.K486N	ENST00000307078	NM_004655.3	486	aaG/aaT																																																																														
MALT1	0	MSKCC	GRCh37	18	56376678	56376678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	187	804	1	ENST00000348428.3:c.718C>A	p.Pro240Thr	p.P240T	ENST00000348428	NM_006785.3	240	Cca/Aca																																																																														
CRLF2	0	MSKCC	GRCh37	X	1317529	1317529	+	downstream_gene_variant	3'Flank	SNP	T	T	A			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	135	579	0				ENST00000381566																																																																																	
BRCA2	0	MSKCC	GRCh37	13	32911074	32911074	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1328	221	928	3	ENST00000380152.3:c.2588delA	p.Asn863IlefsTer11	p.N863Ifs*11	ENST00000380152		861	cAa/ca																																																																														
NF1	0	MSKCC	GRCh37	17	29585442	29585443	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	134	502	0	ENST00000358273.4:c.4255_4256del	p.Val1419LeufsTer4	p.V1419Lfs*4	ENST00000358273	NM_001042492.2	1418	atTGtc/attc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023046	31023046	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	108	550	2	ENST00000375687.4:c.2535del	p.Ser846ValfsTer21	p.S846Vfs*21	ENST00000375687	NM_015338.5	844	aCc/ac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786697	3786697	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	93	748	0	ENST00000262367.5:c.4514del	p.Lys1505ArgfsTer45	p.K1505Rfs*45	ENST00000262367	NM_004380.2	1505	aAg/ag																																																																														
CASP8	0	MSKCC	GRCh37	2	202131457	202131459	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	52	412	0	ENST00000358485.4:c.430_432del	p.Glu144del	p.E144del	ENST00000358485	NM_001080125.1	142	aAGGag/aag																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522383	157522383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	83	409	0	ENST00000346085.5:c.4657del	p.Ala1553ArgfsTer26	p.A1553Rfs*26	ENST00000346085	NM_020732.3	1552	aGg/ag																																																																														
EZH2	0	MSKCC	GRCh37	7	148515090	148515090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	98	451	3	ENST00000320356.2:c.1119del	p.Thr374ProfsTer50	p.T374Pfs*50	ENST00000320356	NM_004456.4	373	ccC/cc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101570	27101570	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	63	526	1	ENST00000324856.7:c.4856del	p.Pro1619GlnfsTer7	p.P1619Qfs*7	ENST00000324856	NM_006015.4	1618	Ccc/cc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98231357	98231358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	59	432	0	ENST00000331920.6:c.1925dup	p.Pro643ThrfsTer11	p.P643Tfs*11	ENST00000331920	NM_000264.3	642	cca/ccCa																																																																														
CSF1R	0	MSKCC	GRCh37	5	149460476	149460476	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	64	572	0	ENST00000286301.3:c.161del	p.Pro54HisfsTer58	p.P54Hfs*58	ENST00000286301	NM_005211.3	54	cCa/ca																																																																														
IGF2	0	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	65	529	0	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																														
CIC	0	MSKCC	GRCh37	19	42795378	42795378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	53	424	0	ENST00000575354.2:c.2462del	p.Gly821GlufsTer103	p.G821Efs*103	ENST00000575354	NM_015125.3	820	Ggg/gg																																																																														
MLL2	0	MSKCC	GRCh37	12	49437474	49437474	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	106	577	0	ENST00000301067.7:c.5411del	p.Pro1804GlnfsTer48	p.P1804Qfs*48	ENST00000301067	NM_003482.3	1804	cCa/ca																																																																														
FANCA	0	MSKCC	GRCh37	16	89838210	89838211	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0006201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	76	473	0	ENST00000389301.3:c.2026_2027delinsAG	p.Gln676Arg	p.Q676R	ENST00000389301	NM_000135.2	676	CAg/AGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			779	405	309	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798118	45798118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200495564		P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			469	125	234	0	ENST00000372115.3:c.691C>T	p.Arg231Cys	p.R231C	ENST00000372115	NM_001048171.1	231	Cgt/Tgt																																																																														
REL	0	MSKCC	GRCh37	2	61149036	61149036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	92	317	1	ENST00000295025.8:c.1226C>T	p.Ser409Phe	p.S409F	ENST00000295025	NM_002908.2	409	tCt/tTt																																																																														
ALK	0	MSKCC	GRCh37	2	30143519	30143519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			177	72	80	0	ENST00000389048.3:c.7G>T	p.Ala3Ser	p.A3S	ENST00000389048	NM_004304.4	3	Gcc/Tcc																																																																														
IRS1	0	MSKCC	GRCh37	2	227662483	227662483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			631	41	172	0	ENST00000305123.5:c.972C>A	p.Phe324Leu	p.F324L	ENST00000305123	NM_005544.2	324	ttC/ttA																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480306	89480306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			746	137	305	0	ENST00000336596.2:c.2143G>T	p.Asp715Tyr	p.D715Y	ENST00000336596	NM_005233.5	715	Gat/Tat																																																																														
MLL3	0	MSKCC	GRCh37	7	151845550	151845550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			708	140	261	0	ENST00000262189.6:c.13462G>T	p.Ala4488Ser	p.A4488S	ENST00000262189	NM_170606.2	4488	Gcc/Tcc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18491478	18491478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			871	200	234	0	ENST00000266497.5:c.1391G>T	p.Gly464Val	p.G464V	ENST00000266497		464	gGa/gTa																																																																														
MGA	0	MSKCC	GRCh37	15	42058564	42058564	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1328	150	545	0	ENST00000219905.7:c.8284G>C	p.Glu2762Gln	p.E2762Q	ENST00000219905	NM_001164273.1	2762	Gaa/Caa																																																																														
MGA	0	MSKCC	GRCh37	15	42058645	42058645	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	137	512	0	ENST00000219905.7:c.8365G>C	p.Glu2789Gln	p.E2789Q	ENST00000219905	NM_001164273.1	2789	Gag/Cag																																																																														
CD276	0	MSKCC	GRCh37	15	73991994	73991994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			627	357	325	0	ENST00000318443.5:c.14G>T	p.Arg5Leu	p.R5L	ENST00000318443	NM_001024736.1	5	cGg/cTg																																																																														
STAT5B	0	MSKCC	GRCh37	17	40364043	40364043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			483	38	227	0	ENST00000293328.3:c.1639G>T	p.Asp547Tyr	p.D547Y	ENST00000293328	NM_012448.3	547	Gac/Tac																																																																														
BRCA1	0	MSKCC	GRCh37	17	41247934	41247934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			988	109	363	2	ENST00000357654.3:c.599G>T	p.Gly200Val	p.G200V	ENST00000357654	NM_007294.3	200	gGa/gTa																																																																														
EP300	0	MSKCC	GRCh37	22	41527516	41527517	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTCTTGG			P-0006221-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			820	313	291	0	ENST00000263253.7:c.1408_1415dup	p.Pro474LeufsTer7	p.P474Lfs*7	ENST00000263253	NM_001429.3	469	-/GCTCTTGG																																																																														
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	236	609	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
EPHB1	2047	MSKCC	GRCh37	3	134873066	134873066	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs762457030		P-0006231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	288	663	1	ENST00000398015.3:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000398015	NM_004441.4	457	cCg/cTg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98247998	98247998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	223	510	0	ENST00000331920.6:c.553G>T	p.Ala185Ser	p.A185S	ENST00000331920	NM_000264.3	185	Gcc/Tcc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786197	3786197	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	253	535	0	ENST00000262367.5:c.4568del	p.Phe1523SerfsTer27	p.F1523Sfs*27	ENST00000262367	NM_004380.2	1523	tTc/tc																																																																														
CDK12	0	MSKCC	GRCh37	17	37618688	37618689	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0006231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	1081	768	1	ENST00000447079.4:c.364_365del	p.Leu122ThrfsTer4	p.L122Tfs*4	ENST00000447079	NM_015083.1	122	TTa/a																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	134	372	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	108	266	0				ENST00000310581	NM_198253.2																																																																																
NTRK1	0	MSKCC	GRCh37	1	156841464	156841464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	155	432	0	ENST00000524377.1:c.767G>A	p.Ser256Asn	p.S256N	ENST00000524377	NM_002529.3	256	aGt/aAt																																																																														
NSD1	0	MSKCC	GRCh37	5	176638542	176638542	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	144	423	0	ENST00000439151.2:c.3142T>G	p.Leu1048Val	p.L1048V	ENST00000439151	NM_022455.4	1048	Tta/Gta																																																																														
MLL	0	MSKCC	GRCh37	11	118390740	118390740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	49	495	0	ENST00000534358.1:c.11390A>G	p.Asn3797Ser	p.N3797S	ENST00000534358	NM_005933.3	3797	aAt/aGt																																																																														
DIS3	0	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0006234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	9	323	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	357	405	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108180903	108180904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	178	335	0	ENST00000278616.4:c.5784dup	p.Asn1929Ter	p.N1929*	ENST00000278616	NM_000051.3	1927	att/aTtt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006245-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			286	58	240	2				ENST00000310581	NM_198253.2																																																																																
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006245-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			665	80	366	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266110	41266110	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006245-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			725	31	366	0	ENST00000349496.5:c.107A>C	p.His36Pro	p.H36P	ENST00000349496	NM_001904.3	36	cAt/cCt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023252	27023252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006245-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			222	38	180	0	ENST00000324856.7:c.358C>T	p.Pro120Ser	p.P120S	ENST00000324856	NM_006015.4	120	Ccg/Tcg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098800	178098800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006245-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			786	75	390	1	ENST00000397062.3:c.245A>G	p.Glu82Gly	p.E82G	ENST00000397062	NM_006164.4	82	gAa/gGa																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138413683	138413683	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006245-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			438	80	268	0	ENST00000289153.2:c.1837A>T	p.Asn613Tyr	p.N613Y	ENST00000289153	NM_006219.2	613	Aac/Tac																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56176564	56176564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006245-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			457	65	303	0	ENST00000399503.3:c.2114C>A	p.Thr705Lys	p.T705K	ENST00000399503	NM_005921.1	705	aCa/aAa																																																																														
CBL	0	MSKCC	GRCh37	11	119144620	119144620	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006245-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			600	59	341	0	ENST00000264033.4:c.633A>C	p.Glu211Asp	p.E211D	ENST00000264033	NM_005188.3	211	gaA/gaC																																																																														
ERCC2	0	MSKCC	GRCh37	19	45855801	45855801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006245-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			560	127	391	0	ENST00000391945.4:c.2009G>A	p.Gly670Asp	p.G670D	ENST00000391945	NM_000400.3	670	gGc/gAc																																																																														
MDC1	0	MSKCC	GRCh37	6	30675161	30675187	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CCTGGAAACCTTCTCAGCAGCTCTGAT	CCTGGAAACCTTCTCAGCAGCTCTGAT	-			P-0006245-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			792	83	506	1	ENST00000376406.3:c.3058_3084del	p.Ile1020_Arg1028del	p.I1020_R1028del	ENST00000376406	NM_014641.2	1020	ATCAGAGCTGCTGAGAAGGTTTCCAGG/-																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651953	36651968	+	frameshift_variant	Frame_Shift_Del	DEL	GGACAGCGAGCAGCTG	GGACAGCGAGCAGCTG	-			P-0006245-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			512	63	256	2	ENST00000244741.5:c.75_90del	p.Asp26AlafsTer7	p.D26Afs*7	ENST00000244741	NM_000389.4	25	gtGGACAGCGAGCAGCTG/gt																																																																														
TP53	0	MSKCC	GRCh37	17	7579348	7579348	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	128	694	0	ENST00000269305.4:c.339del	p.Leu114CysfsTer9	p.L114Cfs*9	ENST00000269305	NM_001126112.2	113	ttC/tt																																																																														
NCOA3	0	MSKCC	GRCh37	20	46256365	46256365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006248-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			694	1108	421	0	ENST00000371998.3:c.593G>A	p.Arg198His	p.R198H	ENST00000371998		198	cGt/cAt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115720	8115815	+	inframe_deletion	In_Frame_Del	DEL	ATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAG	ATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAG	-			P-0006248-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			717	282	300	0	ENST00000346208.3:c.1067_1162del	p.Met356_Lys387del	p.M356_K387del	ENST00000346208		356	ATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAG/-																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	20	506	1	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0006250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	20	495	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	25	554	0	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag																																																																														
STK40	0	MSKCC	GRCh37	1	36809792	36809792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	20	545	1	ENST00000373129.3:c.813G>T	p.Gln271His	p.Q271H	ENST00000373129	NM_032017.1	271	caG/caT																																																																														
AXIN1	0	MSKCC	GRCh37	16	396771	396771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	20	451	0	ENST00000262320.3:c.255G>A	p.Trp85Ter	p.W85*	ENST00000262320	NM_003502.3	85	tgG/tgA																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604785	48604790	+	inframe_deletion	In_Frame_Del	DEL	TAGACG	TAGACG	-			P-0006250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	24	406	0	ENST00000342988.3:c.1607_1612del	p.Leu536_Glu538delinsGln	p.L536_E538delinsQ	ENST00000342988	NM_005359.5	536	cTAGACGaa/caa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604780	48604781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	24	401	0	ENST00000342988.3:c.1602_1603insT	p.Leu535SerfsTer42	p.L535Sfs*42	ENST00000342988	NM_005359.5	534	-/T																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	285	510	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RNF43	0	MSKCC	GRCh37	17	56437605	56437605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	195	513	0	ENST00000407977.2:c.857G>A	p.Arg286Gln	p.R286Q	ENST00000407977		286	cGg/cAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	70	644	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																														
ALK	0	MSKCC	GRCh37	2	29446310	29446310	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138589984		P-0006260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	135	881	0	ENST00000389048.3:c.3257C>T	p.Ser1086Leu	p.S1086L	ENST00000389048	NM_004304.4	1086	tCg/tTg																																																																														
NUP93	0	MSKCC	GRCh37	16	56871538	56871538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	142	656	0	ENST00000308159.5:c.1918G>C	p.Glu640Gln	p.E640Q	ENST00000308159	NM_014669.4	640	Gag/Cag																																																																														
JAK3	0	MSKCC	GRCh37	19	17943399	17943399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	126	640	1	ENST00000458235.1:c.2609G>A	p.Arg870Gln	p.R870Q	ENST00000458235	NM_000215.3	870	cGg/cAg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920469	134920469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	229	448	0	ENST00000398015.3:c.2284G>A	p.Asp762Asn	p.D762N	ENST00000398015	NM_004441.4	762	Gac/Aac																																																																														
SETD2	0	MSKCC	GRCh37	3	47165293	47165293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	186	319	0	ENST00000409792.3:c.833C>T	p.Ser278Phe	p.S278F	ENST00000409792	NM_014159.6	278	tCc/tTc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873066	134873066	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	280	422	0	ENST00000398015.3:c.1370C>G	p.Pro457Arg	p.P457R	ENST00000398015	NM_004441.4	457	cCg/cGg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807137	1807137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	274	429	0	ENST00000260795.2:c.1468G>A	p.Glu490Lys	p.E490K	ENST00000260795		490	Gag/Aag																																																																														
TET2	54790	MSKCC	GRCh37	4	106157822	106157822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	204	360	1	ENST00000380013.4:c.2723G>A	p.Gly908Asp	p.G908D	ENST00000380013	NM_001127208.2	908	gGt/gAt																																																																														
TET2	0	MSKCC	GRCh37	4	106197629	106197629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	144	304	0	ENST00000380013.4:c.5962C>T	p.Pro1988Ser	p.P1988S	ENST00000380013	NM_001127208.2	1988	Cca/Tca																																																																														
FAT1	0	MSKCC	GRCh37	4	187517847	187517847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202133523		P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	294	362	1	ENST00000441802.2:c.12847G>A	p.Glu4283Lys	p.E4283K	ENST00000441802	NM_005245.3	4283	Gaa/Aaa																																																																														
PLK2	0	MSKCC	GRCh37	5	57752920	57752920	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	166	226	0	ENST00000274289.3:c.1009-1G>A		p.X337_splice	ENST00000274289	NM_006622.3	337																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32168668	32168668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	742	486	0	ENST00000375023.3:c.4255G>A	p.Gly1419Arg	p.G1419R	ENST00000375023	NM_004557.3	1419	Gga/Aga																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169074	32169074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	629	430	2	ENST00000375023.3:c.3959C>T	p.Ser1320Phe	p.S1320F	ENST00000375023	NM_004557.3	1320	tCc/tTc																																																																														
HGF	0	MSKCC	GRCh37	7	81359032	81359032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	273	432	0	ENST00000222390.5:c.929G>A	p.Gly310Glu	p.G310E	ENST00000222390	NM_000601.4	310	gGa/gAa																																																																														
BRAF	0	MSKCC	GRCh37	7	140453152	140453152	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	203	293	0	ENST00000288602.6:c.1783T>A	p.Phe595Ile	p.F595I	ENST00000288602	NM_004333.4	595	Ttt/Att																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528663	8528663	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	238	375	2	ENST00000356435.5:c.469A>T	p.Ile157Phe	p.I157F	ENST00000356435		157	Atc/Ttc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63760041	63760041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	197	226	0	ENST00000279873.7:c.694C>T	p.Pro232Ser	p.P232S	ENST00000279873	NM_032199.2	232	Ccg/Tcg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123298225	123298225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	144	255	0	ENST00000358487.5:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000358487	NM_000141.4	210	cGa/cAa																																																																														
FGF19	0	MSKCC	GRCh37	11	69514110	69514110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	233	434	2	ENST00000294312.3:c.571C>T	p.Pro191Ser	p.P191S	ENST00000294312	NM_005117.2	191	Ccc/Tcc																																																																														
CBL	0	MSKCC	GRCh37	11	119148973	119148973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	241	359	0	ENST00000264033.4:c.1193A>G	p.His398Arg	p.H398R	ENST00000264033	NM_005188.3	398	cAc/cGc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18793451	18793451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	243	346	0	ENST00000266497.5:c.4148C>T	p.Ser1383Phe	p.S1383F	ENST00000266497		1383	tCt/tTt																																																																														
MLL2	0	MSKCC	GRCh37	12	49425569	49425569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	439	653	0	ENST00000301067.7:c.12919C>T	p.Pro4307Ser	p.P4307S	ENST00000301067	NM_003482.3	4307	Ccc/Tcc																																																																														
GLI1	0	MSKCC	GRCh37	12	57858947	57858947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	468	636	2	ENST00000228682.2:c.443C>T	p.Ser148Phe	p.S148F	ENST00000228682	NM_005269.2	148	tCc/tTc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121416765	121416765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	347	490	0	ENST00000257555.6:c.194G>A	p.Gly65Glu	p.G65E	ENST00000257555		65	gGg/gAg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435399	110435399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	170	354	0	ENST00000375856.3:c.3002C>T	p.Ser1001Phe	p.S1001F	ENST00000375856	NM_003749.2	1001	tCc/tTc																																																																														
MGA	0	MSKCC	GRCh37	15	41989106	41989106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	396	581	0	ENST00000219905.7:c.1898G>C	p.Gly633Ala	p.G633A	ENST00000219905	NM_001164273.1	633	gGa/gCa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5240343	5240343	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	438	356	0	ENST00000357368.4:c.1571T>G	p.Val524Gly	p.V524G	ENST00000357368	NM_002850.3	524	gTg/gGg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15308348	15308348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	274	445	0	ENST00000263388.2:c.160C>T	p.Arg54Cys	p.R54C	ENST00000263388	NM_000435.2	54	Cgt/Tgt																																																																														
POLD1	0	MSKCC	GRCh37	19	50919081	50919081	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	199	404	0	ENST00000440232.2:c.2818G>A	p.Glu940Lys	p.E940K	ENST00000440232	NM_002691.3	940	Gag/Aag																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31388677	31388677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	330	452	1	ENST00000328111.2:c.1942G>A	p.Gly648Arg	p.G648R	ENST00000328111	NM_006892.3	648	Gga/Aga																																																																														
CRLF2	0	MSKCC	GRCh37	X	1317569	1317569	+	downstream_gene_variant	3'Flank	SNP	T	T	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	223	304	0				ENST00000381566																																																																																	
AR	0	MSKCC	GRCh37	X	66941716	66941716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	289	291	0	ENST00000374690.3:c.2360G>A	p.Arg787Gln	p.R787Q	ENST00000374690	NM_000044.3	787	cGa/cAa																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257551	19257552	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AT			P-0006267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	368	370	1	ENST00000162023.5:c.674_675delinsAT	p.Ser225Tyr	p.S225Y	ENST00000162023		225	tCC/tAT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	125	301	1				ENST00000310581	NM_198253.2																																																																																
MDC1	0	MSKCC	GRCh37	6	30681461	30681461	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	137	422	0	ENST00000376406.3:c.551C>A	p.Ser184Ter	p.S184*	ENST00000376406	NM_014641.2	184	tCa/tAa																																																																														
SOX9	0	MSKCC	GRCh37	17	70117682	70117682	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	125	498	0	ENST00000245479.2:c.150G>C	p.Glu50Asp	p.E50D	ENST00000245479	NM_000346.3	50	gaG/gaC																																																																														
KDM6A	0	MSKCC	GRCh37	X	44966763	44966768	+	inframe_deletion	In_Frame_Del	DEL	TTACTG	TTACTG	-			P-0006270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	176	449	0	ENST00000377967.4:c.3988_3993del	p.Tyr1330_Cys1331del	p.Y1330_C1331del	ENST00000377967	NM_021140.2	1329	caTTACTGt/cat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	518	535	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	625	1002	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
RB1	0	MSKCC	GRCh37	13	49047527	49047527	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0006277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	176	482	0	ENST00000267163.4:c.2520+1G>T		p.X840_splice	ENST00000267163	NM_000321.2	840																																																																															
BCL2L11	0	MSKCC	GRCh37	2	111881632	111881632	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	122	821	0	ENST00000393256.3:c.310del	p.Ser104AlafsTer5	p.S104Afs*5	ENST00000393256	NM_006538.4	104	Agc/gc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	38	152	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	29	238	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156845904	156845904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	26	287	1	ENST00000524377.1:c.1534C>T	p.Leu512Phe	p.L512F	ENST00000524377	NM_002529.3	512	Ctc/Ttc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157495215	157495215	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	46	202	0	ENST00000346085.5:c.3099A>C	p.Lys1033Asn	p.K1033N	ENST00000346085	NM_020732.3	1033	aaA/aaC																																																																														
INHBA	0	MSKCC	GRCh37	7	41729491	41729491	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	48	336	0	ENST00000242208.4:c.1038T>G	p.His346Gln	p.H346Q	ENST00000242208	NM_002192.2	346	caT/caG																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920448	114920448	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	48	276	0	ENST00000543371.1:c.1389C>G	p.Cys463Trp	p.C463W	ENST00000543371	NM_001198531.1	463	tgC/tgG																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266037	41266620	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	ATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTG	ATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTG	-			P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	33	204	0	ENST00000349496.5:c.36_419del		p.X12_splice	ENST00000349496	NM_001904.3	12	ATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTG/-																																																																														
CDC73	0	MSKCC	GRCh37	1	193107222	193107222	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	18	168	0	ENST00000367435.3:c.431del	p.Glu144GlyfsTer58	p.E144Gfs*58	ENST00000367435	NM_024529.4	144	gAg/gg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71008403	71008403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	333	289	0	ENST00000318789.4:c.2029G>C	p.Glu677Gln	p.E677Q	ENST00000318789	NM_032682.5	677	Gag/Cag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911504	32911504	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	930	445	0	ENST00000380152.3:c.3015del	p.Phe1005LeufsTer38	p.F1005Lfs*38	ENST00000380152		1004	agT/ag																																																																														
MTOR	0	MSKCC	GRCh37	1	11186791	11186791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	270	505	0	ENST00000361445.4:c.6414G>T	p.Leu2138Phe	p.L2138F	ENST00000361445	NM_004958.3	2138	ttG/ttT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	65	190	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FLT1	0	MSKCC	GRCh37	13	28891686	28891686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143726778		P-0006315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	151	481	0	ENST00000282397.4:c.3335G>A	p.Arg1112His	p.R1112H	ENST00000282397	NM_002019.4	1112	cGc/cAc																																																																														
CBL	0	MSKCC	GRCh37	11	119142456	119142456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	105	276	0	ENST00000264033.4:c.455C>T	p.Thr152Ile	p.T152I	ENST00000264033	NM_005188.3	152	aCc/aTc																																																																														
CDH1	0	MSKCC	GRCh37	16	68849442	68849442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	117	335	0	ENST00000261769.5:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000261769	NM_004360.3	449	Cag/Tag																																																																														
ATRX	0	MSKCC	GRCh37	X	76939351	76939351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	130	440	0	ENST00000373344.5:c.1397G>T	p.Arg466Ile	p.R466I	ENST00000373344	NM_000489.3	466	aGa/aTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	145	406	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																														
MTOR	0	MSKCC	GRCh37	1	11184625	11184625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	64	467	0	ENST00000361445.4:c.6592G>T	p.Val2198Leu	p.V2198L	ENST00000361445	NM_004958.3	2198	Gtg/Ttg																																																																														
SHQ1	0	MSKCC	GRCh37	3	72799817	72799817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	108	399	0	ENST00000325599.8:c.1352G>T	p.Ser451Ile	p.S451I	ENST00000325599	NM_018130.2	451	aGc/aTc																																																																														
ATR	0	MSKCC	GRCh37	3	142224010	142224010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	84	493	0	ENST00000350721.4:c.5167G>T	p.Asp1723Tyr	p.D1723Y	ENST00000350721	NM_001184.3	1723	Gac/Tac																																																																														
SOX2	0	MSKCC	GRCh37	3	181430639	181430639	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	64	313	0	ENST00000325404.1:c.491A>T	p.Asn164Ile	p.N164I	ENST00000325404	NM_003106.3	164	aAc/aTc																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185190905	185190905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1357	73	691	2	ENST00000265026.3:c.1786A>G	p.Arg596Gly	p.R596G	ENST00000265026	NM_004721.4	596	Aga/Gga																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152018	55152018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79948560		P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	89	397	1	ENST00000257290.5:c.2450G>A	p.Arg817His	p.R817H	ENST00000257290	NM_006206.4	817	cGt/cAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187557831	187557831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	109	433	2	ENST00000441802.2:c.3880G>T	p.Gly1294Trp	p.G1294W	ENST00000441802	NM_005245.3	1294	Ggg/Tgg																																																																														
FGFR1	0	MSKCC	GRCh37	8	38287311	38287311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	126	532	0	ENST00000425967.3:c.346G>T	p.Gly116Trp	p.G116W	ENST00000425967	NM_001174067.1	116	Ggg/Tgg																																																																														
TSHR	0	MSKCC	GRCh37	14	81528556	81528556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	49	330	0	ENST00000298171.2:c.235T>C	p.Ser79Pro	p.S79P	ENST00000298171	NM_000369.2	79	Tcc/Ccc																																																																														
CDH1	0	MSKCC	GRCh37	16	68855998	68855998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1232	74	508	0	ENST00000261769.5:c.1806C>G	p.Phe602Leu	p.F602L	ENST00000261769	NM_004360.3	602	ttC/ttG																																																																														
SUZ12	0	MSKCC	GRCh37	17	30264459	30264459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	118	387	0	ENST00000322652.5:c.194G>T	p.Gly65Val	p.G65V	ENST00000322652	NM_015355.2	65	gGg/gTg																																																																														
STK11	0	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	93	422	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944592	40944592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	66	242	0	ENST00000373198.4:c.1910G>T	p.Arg637Leu	p.R637L	ENST00000373198	NM_133170.3	637	cGg/cTg																																																																														
BCOR	0	MSKCC	GRCh37	X	39932654	39932654	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	148	742	2	ENST00000378444.4:c.1945C>A	p.Pro649Thr	p.P649T	ENST00000378444	NM_001123385.1	649	Cca/Aca																																																																														
KDM5C	0	MSKCC	GRCh37	X	53247530	53247530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	130	625	0	ENST00000375401.3:c.279G>T	p.Trp93Cys	p.W93C	ENST00000375401	NM_004187.3	93	tgG/tgT																																																																														
AMER1	0	MSKCC	GRCh37	X	63410853	63410853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	62	615	0	ENST00000330258.3:c.2314G>T	p.Ala772Ser	p.A772S	ENST00000330258	NM_152424.3	772	Gcc/Tcc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2206753	2206754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1189	127	551	0	ENST00000398665.3:c.816dup	p.Ala273CysfsTer10	p.A273Cfs*10	ENST00000398665	NM_032482.2	271	-/T																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11136995	11136996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	117	441	0	ENST00000344626.4:c.3192dup	p.Phe1065ValfsTer17	p.F1065Vfs*17	ENST00000344626	NM_003072.3	1063	ttg/ttGg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25459874	25459875	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0006341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	87	476	0	ENST00000264709.3:c.2409-1_2409delinsTT		p.X803_splice	ENST00000264709	NM_175629.2	803																																																																															
ANKRD11	0	MSKCC	GRCh37	16	89347552	89347552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	135	451	0	ENST00000301030.4:c.5398G>A	p.Glu1800Lys	p.E1800K	ENST00000301030	NM_001256183.1	1800	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68863628	68863628	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	241	285	0	ENST00000261769.5:c.2368del	p.Thr790ProfsTer3	p.T790Pfs*3	ENST00000261769	NM_004360.3	789	ccA/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	60	323	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	38	386	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
ALK	0	MSKCC	GRCh37	2	29543657	29543657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	91	527	0	ENST00000389048.3:c.1506G>T	p.Gln502His	p.Q502H	ENST00000389048	NM_004304.4	502	caG/caT																																																																														
FAT1	0	MSKCC	GRCh37	4	187629928	187629928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	81	406	0	ENST00000441802.2:c.1054G>T	p.Val352Phe	p.V352F	ENST00000441802	NM_005245.3	352	Gtc/Ttc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168735	56168735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	44	353	1	ENST00000399503.3:c.1589G>T	p.Gly530Val	p.G530V	ENST00000399503	NM_005921.1	530	gGa/gTa																																																																														
NUP93	0	MSKCC	GRCh37	16	56864521	56864521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	95	557	0	ENST00000308159.5:c.1009G>T	p.Val337Leu	p.V337L	ENST00000308159	NM_014669.4	337	Gta/Tta																																																																														
STK11	0	MSKCC	GRCh37	19	1220695	1220695	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	53	289	0	ENST00000326873.7:c.713T>A	p.Ile238Asn	p.I238N	ENST00000326873	NM_000455.4	238	aTc/aAc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091758	29091758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	36	147	0	ENST00000328354.6:c.1199G>T	p.Gly400Val	p.G400V	ENST00000328354	NM_007194.3	400	gGg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	95	483	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45374883	45374883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	142	501	1	ENST00000262160.6:c.960C>A	p.Asn320Lys	p.N320K	ENST00000262160	NM_005901.5	320	aaC/aaA																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729089	66729100	+	frameshift_variant	Frame_Shift_Del	DEL	TCATCTGGAGAT	TCATCTGGAGAT	AG			P-0006378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	140	551	0	ENST00000307102.5:c.297_308delinsAG	p.His100AlafsTer10	p.H100Afs*10	ENST00000307102	NM_002755.3	99	atTCATCTGGAGATc/atAGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	352	341	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5221161	5221161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	542	466	0	ENST00000357368.4:c.3305G>A	p.Arg1102His	p.R1102H	ENST00000357368	NM_002850.3	1102	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0006394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	231	341	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
CXCR4	0	MSKCC	GRCh37	2	136872741	136872741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	273	691	0	ENST00000241393.3:c.757C>A	p.Leu253Met	p.L253M	ENST00000241393	NM_003467.2	253	Ctg/Atg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47103716	47103716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs981018402		P-0006394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	481	476	0	ENST00000409792.3:c.6230G>A	p.Arg2077Gln	p.R2077Q	ENST00000409792	NM_014159.6	2077	cGa/cAa																																																																														
APC	0	MSKCC	GRCh37	5	112170788	112170789	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0006394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	132	523	0	ENST00000257430.4:c.1885_1886del	p.Leu629SerfsTer4	p.L629Sfs*4	ENST00000257430	NM_000038.5	628	acTTta/acta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	196	433	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56181765	56181765	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	190	349	0	ENST00000399503.3:c.3989C>G	p.Ser1330Trp	p.S1330W	ENST00000399503	NM_005921.1	1330	tCg/tGg																																																																														
MEN1	0	MSKCC	GRCh37	11	64572261	64572261	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	302	566	2	ENST00000337652.1:c.1393C>T	p.Arg465Ter	p.R465*	ENST00000337652	NM_130803.2	465	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578435	7578435	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	230	403	0	ENST00000269305.4:c.495G>T	p.Gln165His	p.Q165H	ENST00000269305	NM_001126112.2	165	caG/caT																																																																														
NF1	0	MSKCC	GRCh37	17	29661994	29661994	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	210	427	0	ENST00000358273.4:c.5951A>G	p.Asn1984Ser	p.N1984S	ENST00000358273	NM_001042492.2	1984	aAt/aGt																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0006406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	190	394	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	45	263	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
BAP1	0	MSKCC	GRCh37	3	52441213	52441213	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	46	444	0	ENST00000460680.1:c.557T>A	p.Leu186Gln	p.L186Q	ENST00000460680	NM_004656.3	186	cTg/cAg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44966733	44966733	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	119	396	0	ENST00000377967.4:c.3957G>A	p.Trp1319Ter	p.W1319*	ENST00000377967	NM_021140.2	1319	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	72	646	4	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	218	585	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0006439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	145	565	0	ENST00000269305.4:c.378C>A	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taA																																																																														
NTRK1	0	MSKCC	GRCh37	1	156846267	156846267	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	43	591	0	ENST00000524377.1:c.1708C>T	p.Gln570Ter	p.Q570*	ENST00000524377	NM_002529.3	570	Cag/Tag																																																																														
ROS1	0	MSKCC	GRCh37	6	117681033	117681033	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	42	593	0	ENST00000368508.3:c.3587del	p.Gly1196AspfsTer47	p.G1196Dfs*47	ENST00000368508	NM_002944.2	1196	gGa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	382	537	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112151189	112151214	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGGGTTCAACTACACGAATGGACCA	TAGGGTTCAACTACACGAATGGACCA	-			P-0006442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	86	422	0	ENST00000257430.4:c.835-2_858del		p.X279_splice	ENST00000257430	NM_000038.5	279																																																																															
CUL3	0	MSKCC	GRCh37	2	225376240	225376246	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTACT	TTCTACT	-			P-0006442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	49	408	0	ENST00000264414.4:c.708_714del	p.Val237LeufsTer7	p.V237Lfs*7	ENST00000264414	NM_003590.4	236	aaAGTAGAA/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	1234	468	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
TSHR	0	MSKCC	GRCh37	14	81558892	81558892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	313	506	0	ENST00000298171.2:c.485C>A	p.Pro162His	p.P162H	ENST00000298171	NM_000369.2	162	cCt/cAt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120465395	120465395	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	33	233	0	ENST00000256646.2:c.4866A>C	p.Lys1622Asn	p.K1622N	ENST00000256646	NM_024408.3	1622	aaA/aaC																																																																														
FLT4	0	MSKCC	GRCh37	5	180043407	180043407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	43	509	0	ENST00000261937.6:c.3179G>T	p.Arg1060Leu	p.R1060L	ENST00000261937	NM_182925.4	1060	cGg/cTg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	99	481	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
RNF43	0	MSKCC	GRCh37	17	56438216	56438216	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	66	440	0	ENST00000407977.2:c.777G>A	p.Trp259Ter	p.W259*	ENST00000407977		259	tgG/tgA																																																																														
CDH1	0	MSKCC	GRCh37	16	68845712	68845753	+	inframe_deletion	In_Frame_Del	DEL	AACAGGAACACAGGAGTCATCAGTGTGGTCACCACTGGGCTG	AACAGGAACACAGGAGTCATCAGTGTGGTCACCACTGGGCTG	-			P-0006475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	132	449	0	ENST00000261769.5:c.958_999delAACAGGAACACAGGAGTCATCAGTGTGGTCACCACTGGGCTG	p.Asn320_Leu333del	p.N320_L333del	ENST00000261769	NM_004360.3	320	AACAGGAACACAGGAGTCATCAGTGTGGTCACCACTGGGCTG/-																																																																														
SF3B1	0	MSKCC	GRCh37	2	198262815	198262815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	103	278	0	ENST00000335508.6:c.3160G>A	p.Glu1054Lys	p.E1054K	ENST00000335508	NM_012433.2	1054	Gag/Aag																																																																														
DIS3	0	MSKCC	GRCh37	13	73336242	73336242	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	168	308	0	ENST00000377767.4:c.2161T>A	p.Leu721Met	p.L721M	ENST00000377767	NM_014953.3	721	Ttg/Atg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138585	11138611	+	inframe_deletion	In_Frame_Del	DEL	ATTACTTTGCGTATCGCGGCTTTAAAT	ATTACTTTGCGTATCGCGGCTTTAAAT	-			P-0006503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	181	473	0	ENST00000344626.4:c.3342_3368del	p.Tyr1115_Tyr1123del	p.Y1115_Y1123del	ENST00000344626	NM_003072.3	1114	gATTACTTTGCGTATCGCGGCTTTAAATac/gac																																																																														
SETD2	0	MSKCC	GRCh37	3	47164836	47164837	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	168	435	0	ENST00000409792.3:c.1289_1290del	p.Ser430Ter	p.S430*	ENST00000409792	NM_014159.6	430	tCT/t																																																																														
NF2	0	MSKCC	GRCh37	22	30060987	30060988	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	203	404	1	ENST00000338641.4:c.822dup	p.Pro275ThrfsTer4	p.P275Tfs*4	ENST00000338641	NM_000268.3	273	-/A																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458729	120458729	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	70	498	0	ENST00000256646.2:c.6616G>T	p.Glu2206Ter	p.E2206*	ENST00000256646	NM_024408.3	2206	Gaa/Taa																																																																														
MTOR	0	MSKCC	GRCh37	1	11174418	11174418	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	122	586	0	ENST00000361445.4:c.7257A>T	p.Glu2419Asp	p.E2419D	ENST00000361445	NM_004958.3	2419	gaA/gaT																																																																														
SF3B1	0	MSKCC	GRCh37	2	198269895	198269895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	26	229	0	ENST00000335508.6:c.1444G>A	p.Val482Ile	p.V482I	ENST00000335508	NM_012433.2	482	Gtt/Att																																																																														
SF3B1	0	MSKCC	GRCh37	2	198288535	198288535	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	71	452	0	ENST00000335508.6:c.192A>T	p.Glu64Asp	p.E64D	ENST00000335508	NM_012433.2	64	gaA/gaT																																																																														
VHL	0	MSKCC	GRCh37	3	10183863	10183863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	82	211	0	ENST00000256474.2:c.332G>A	p.Ser111Asn	p.S111N	ENST00000256474	NM_000551.3	111	aGc/aAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47158197	47158197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	77	469	1	ENST00000409792.3:c.4502G>T	p.Cys1501Phe	p.C1501F	ENST00000409792	NM_014159.6	1501	tGt/tTt																																																																														
RHOA	0	MSKCC	GRCh37	3	49405929	49405929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	111	585	1	ENST00000418115.1:c.209G>A	p.Arg70Lys	p.R70K	ENST00000418115	NM_001664.2	70	aGg/aAg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152006	55152006	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	90	384	1	ENST00000257290.5:c.2440-2A>T		p.X814_splice	ENST00000257290	NM_006206.4	814																																																																															
EPHA5	0	MSKCC	GRCh37	4	66509124	66509124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	98	460	0	ENST00000273854.3:c.203C>T	p.Thr68Ile	p.T68I	ENST00000273854	NM_004439.5	68	aCt/aTt																																																																														
RET	0	MSKCC	GRCh37	10	43615093	43615093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	209	610	0	ENST00000355710.3:c.2507G>A	p.Ser836Asn	p.S836N	ENST00000355710	NM_020975.4	836	aGc/aAc																																																																														
ATM	0	MSKCC	GRCh37	11	108186613	108186613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	84	395	1	ENST00000278616.4:c.6070G>A	p.Gly2024Arg	p.G2024R	ENST00000278616	NM_000051.3	2024	Ggg/Agg																																																																														
GLI1	0	MSKCC	GRCh37	12	57865628	57865628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	128	720	1	ENST00000228682.2:c.3105C>A	p.Asn1035Lys	p.N1035K	ENST00000228682	NM_005269.2	1035	aaC/aaA																																																																														
SUZ12	0	MSKCC	GRCh37	17	30320351	30320351	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	58	503	0	ENST00000322652.5:c.1292A>T	p.Gln431Leu	p.Q431L	ENST00000322652	NM_015355.2	431	cAg/cTg																																																																														
RNF43	0	MSKCC	GRCh37	17	56435744	56435744	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	88	346	0	ENST00000407977.2:c.1393G>C	p.Asp465His	p.D465H	ENST00000407977		465	Gac/Cac																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395769	45395769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	75	438	0	ENST00000262160.6:c.365G>T	p.Gly122Val	p.G122V	ENST00000262160	NM_005901.5	122	gGa/gTa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15280902	15280902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	98	487	2	ENST00000263388.2:c.5194C>A	p.Leu1732Ile	p.L1732I	ENST00000263388	NM_000435.2	1732	Cta/Ata																																																																														
BRD4	0	MSKCC	GRCh37	19	15353734	15353734	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	237	597	1	ENST00000263377.2:c.3146A>T	p.His1049Leu	p.H1049L	ENST00000263377	NM_058243.2	1049	cAc/cTc																																																																														
LATS1	0	MSKCC	GRCh37	6	150004556	150004557	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	169	758	0	ENST00000253339.5:c.1668dup	p.Pro557ThrfsTer22	p.P557Tfs*22	ENST00000253339		556	-/A																																																																														
BAP1	0	MSKCC	GRCh37	3	52436396	52436470	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCGCACGGAGATGTTCTGCTCCACTAGGTTGGCCAGCATGCCTGCGAAGAGGTAGAGACCCTTGAGCAGGTGCT	GCCGCACGGAGATGTTCTGCTCCACTAGGTTGGCCAGCATGCCTGCGAAGAGGTAGAGACCCTTGAGCAGGTGCT	-			P-0006520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	196	506	0	ENST00000460680.1:c.2057-33_2098del		p.X686_splice	ENST00000460680	NM_004656.3	686																																																																															
TP53	0	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	45	377	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	20	472	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	161	307	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741559	145741559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	72	532	0	ENST00000428558.2:c.944C>T	p.Ser315Leu	p.S315L	ENST00000428558	NM_004260.3	315	tCg/tTg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123276833	123276833	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	23	437	0	ENST00000358487.5:c.1084G>T	p.Ala362Ser	p.A362S	ENST00000358487	NM_000141.4	362	Gcg/Tcg																																																																														
SRC	0	MSKCC	GRCh37	20	36028691	36028691	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	35	399	0	ENST00000358208.4:c.1033A>T	p.Ser345Cys	p.S345C	ENST00000358208		345	Agc/Tgc																																																																														
CRKL	0	MSKCC	GRCh37	22	21288345	21288345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	42	533	0	ENST00000354336.3:c.590G>A	p.Ser197Asn	p.S197N	ENST00000354336	NM_005207.3	197	aGt/aAt																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185165687	185165687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	98	531	0	ENST00000265026.3:c.962C>T	p.Ala321Val	p.A321V	ENST00000265026	NM_004721.4	321	gCg/gTg																																																																														
BAP1	0	MSKCC	GRCh37	3	52443626	52443626	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0006553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	213	428	1	ENST00000460680.1:c.68-2A>T		p.X23_splice	ENST00000460680	NM_004656.3	23																																																																															
MLL3	0	MSKCC	GRCh37	7	151884446	151884446	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	64	579	0	ENST00000262189.6:c.4909C>A	p.Leu1637Ile	p.L1637I	ENST00000262189	NM_170606.2	1637	Ctt/Att																																																																														
RASA1	0	MSKCC	GRCh37	5	86627234	86627238	+	frameshift_variant	Frame_Shift_Del	DEL	TTATC	TTATC	-			P-0006553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	171	561	0	ENST00000274376.6:c.613_617delCTTAT	p.Leu205LysfsTer4	p.L205Kfs*4	ENST00000274376	NM_002890.2	203	agTTATCtt/agtt																																																																														
GATA3	0	MSKCC	GRCh37	10	8111562	8111562	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs112399242		P-0006556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	204	372	0	ENST00000346208.3:c.1047+1G>A		p.X349_splice	ENST00000346208		349																																																																															
KDM5A	0	MSKCC	GRCh37	12	404937	404937	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	225	393	0	ENST00000399788.2:c.4257del	p.Gln1419HisfsTer31	p.Q1419Hfs*31	ENST00000399788	NM_001042603.1	1419	caA/ca																																																																														
SPEN	0	MSKCC	GRCh37	1	16263728	16263729	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	183	381	0	ENST00000375759.3:c.10098dup	p.Pro3367ThrfsTer48	p.P3367Tfs*48	ENST00000375759	NM_015001.2	3366	gca/gcAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	85	390	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MET	0	MSKCC	GRCh37	7	116340283	116340283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	113	340	0	ENST00000397752.3:c.1145A>G	p.Asn382Ser	p.N382S	ENST00000397752	NM_000245.2	382	aAt/aGt																																																																														
GNAS	0	MSKCC	GRCh37	20	57485028	57485028	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	140	397	1	ENST00000371085.3:c.862A>T	p.Ile288Phe	p.I288F	ENST00000371085	NM_000516.4	288	Atc/Ttc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56179488	56179514	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTAATGGCTGTTAAACAGGTAAATAT	TTTAATGGCTGTTAAACAGGTAAATAT	-			P-0006563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	85	345	0	ENST00000399503.3:c.3801_3819+8del		p.X1267_splice	ENST00000399503	NM_005921.1	1267																																																																															
MAP3K1	0	MSKCC	GRCh37	5	56168811	56168811	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	86	328	0	ENST00000399503.3:c.1667del	p.Leu556Ter	p.L556*	ENST00000399503	NM_005921.1	555	gaT/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	47	283	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	23	228	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KIT	0	MSKCC	GRCh37	4	55593482	55593482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	37	356	0	ENST00000288135.5:c.1639T>A	p.Tyr547Asn	p.Y547N	ENST00000288135	NM_000222.2	547	Tat/Aat																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581360	48581360	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	29	228	0	ENST00000342988.3:c.664A>T	p.Thr222Ser	p.T222S	ENST00000342988	NM_005359.5	222	Aca/Tca																																																																														
VHL	0	MSKCC	GRCh37	3	10188219	10188219	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs5030832		P-0006586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	182	406	0	ENST00000256474.2:c.362A>G	p.Asp121Gly	p.D121G	ENST00000256474	NM_000551.3	121	gAt/gGt																																																																														
PIM1	0	MSKCC	GRCh37	6	37138551	37138551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0006586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	139	331	0	ENST00000373509.5:c.85A>G	p.Lys29Glu	p.K29E	ENST00000373509	NM_002648.3	29	Aag/Gag																																																																														
PALB2	0	MSKCC	GRCh37	16	23634361	23634361	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	174	471	0	ENST00000261584.4:c.2925G>T	p.Arg975Ser	p.R975S	ENST00000261584	NM_024675.3	975	agG/agT																																																																														
BAP1	0	MSKCC	GRCh37	3	52443888	52443889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	98	266	0	ENST00000460680.1:c.6dup	p.Lys3Ter	p.K3*	ENST00000460680	NM_004656.3	2	-/T																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	79	340	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	83	356	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																														
TP63	0	MSKCC	GRCh37	3	189590648	189590648	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	17	369	0	ENST00000264731.3:c.1213G>A	p.Val405Met	p.V405M	ENST00000264731	NM_003722.4	405	Gtg/Atg																																																																														
SETD2	0	MSKCC	GRCh37	3	47163438	47163441	+	frameshift_variant	Frame_Shift_Del	DEL	AGTT	AGTT	-			P-0006596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	48	372	0	ENST00000409792.3:c.2685_2688del	p.Thr896SerfsTer2	p.T896Sfs*2	ENST00000409792	NM_014159.6	895	ctAACT/ct																																																																														
SETD2	0	MSKCC	GRCh37	3	47163008	47163009	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CGAATAATCTTCA			P-0006596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	21	425	0	ENST00000409792.3:c.3117_3118insTGAAGATTATTCG	p.Gly1040Ter	p.G1040*	ENST00000409792	NM_014159.6	1039	-/TGAAGATTATTCG																																																																														
TBX3	0	MSKCC	GRCh37	12	115115457	115115458	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	48	482	0	ENST00000257566.3:c.868dupA	p.Thr290AsnfsTer37	p.T290Nfs*37	ENST00000257566	NM_016569.3	290	acc/aAcc																																																																														
TSC1	0	MSKCC	GRCh37	9	135786928	135786928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	55	460	0	ENST00000298552.3:c.941C>T	p.Thr314Met	p.T314M	ENST00000298552	NM_001162426.1	314	aCg/aTg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55153697	55153697	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	74	476	0	ENST00000257290.5:c.2663T>A	p.Ile888Asn	p.I888N	ENST00000257290	NM_006206.4	888	aTc/aAc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467823	50467823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	69	332	0	ENST00000331340.3:c.1058C>T	p.Pro353Leu	p.P353L	ENST00000331340	NM_006060.4	353	cCg/cTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857209	9857209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	83	616	0	ENST00000330684.3:c.4192G>A	p.Asp1398Asn	p.D1398N	ENST00000330684	NM_001134407.1	1398	Gac/Aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	734	427	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	96	217	0				ENST00000310581	NM_198253.2																																																																																
PTPRT	0	MSKCC	GRCh37	20	41419926	41419926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	288	520	0	ENST00000373198.4:c.395G>A	p.Gly132Glu	p.G132E	ENST00000373198	NM_133170.3	132	gGg/gAg																																																																														
MTOR	0	MSKCC	GRCh37	1	11169377	11169377	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	313	561	0	ENST00000361445.4:c.7498A>T	p.Ile2500Phe	p.I2500F	ENST00000361445	NM_004958.3	2500	Att/Ttt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812278	212812278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	230	484	1	ENST00000342788.4:c.298G>A	p.Glu100Lys	p.E100K	ENST00000342788	NM_005235.2	100	Gag/Aag																																																																														
IL7R	0	MSKCC	GRCh37	5	35873664	35873664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	183	515	0	ENST00000303115.3:c.620C>T	p.Ser207Phe	p.S207F	ENST00000303115	NM_002185.3	207	tCc/tTc																																																																														
IL7R	0	MSKCC	GRCh37	5	35876208	35876208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	239	487	1	ENST00000303115.3:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000303115	NM_002185.3	334	Gaa/Aaa																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056533	26056533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	108	216	0	ENST00000343677.2:c.124G>A	p.Glu42Lys	p.E42K	ENST00000343677	NM_005319.3	42	Gag/Aag																																																																														
MET	0	MSKCC	GRCh37	7	116412037	116412037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	474	337	0	ENST00000397752.3:c.3022C>T	p.Pro1008Ser	p.P1008S	ENST00000397752	NM_000245.2	1008	Cca/Tca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390909	139390909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	188	436	0	ENST00000277541.6:c.7282C>T	p.His2428Tyr	p.H2428Y	ENST00000277541	NM_017617.3	2428	Cac/Tac																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18699323	18699323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199904184		P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	191	485	1	ENST00000266497.5:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000266497		1142	Cgt/Tgt																																																																														
DIS3	0	MSKCC	GRCh37	13	73342933	73342933	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	243	415	0	ENST00000377767.4:c.1873A>T	p.Ile625Phe	p.I625F	ENST00000377767	NM_014953.3	625	Att/Ttt																																																																														
IRS2	0	MSKCC	GRCh37	13	110437061	110437061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	21	34	0	ENST00000375856.3:c.1340C>T	p.Ser447Phe	p.S447F	ENST00000375856	NM_003749.2	447	tCc/tTc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350566	89350566	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	354	666	0	ENST00000301030.4:c.2384T>A	p.Phe795Tyr	p.F795Y	ENST00000301030	NM_001256183.1	795	tTt/tAt																																																																														
AXL	0	MSKCC	GRCh37	19	41763408	41763408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	345	532	0	ENST00000301178.4:c.2207G>A	p.Gly736Glu	p.G736E	ENST00000301178	NM_021913.4	736	gGg/gAg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53230884	53230884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	181	233	2	ENST00000375401.3:c.1909C>T	p.Arg637Trp	p.R637W	ENST00000375401	NM_004187.3	637	Cgg/Tgg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240747	53240747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	259	316	0	ENST00000375401.3:c.1333C>T	p.His445Tyr	p.H445Y	ENST00000375401	NM_004187.3	445	Cat/Tat																																																																														
NSD1	0	MSKCC	GRCh37	5	176721286	176721287	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	135	349	0	ENST00000439151.2:c.6917_6918delinsTT	p.Ser2306Phe	p.S2306F	ENST00000439151	NM_022455.4	2306	tCC/tTT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	750	326	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0006637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	156	302	0	ENST00000269305.4:c.97-2A>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
DDR2	0	MSKCC	GRCh37	1	162731176	162731176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	196	393	0	ENST00000367921.3:c.1031G>T	p.Ser344Ile	p.S344I	ENST00000367921	NM_006182.2	344	aGt/aTt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55161354	55161354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	130	417	0	ENST00000257290.5:c.3185G>T	p.Arg1062Ile	p.R1062I	ENST00000257290	NM_006206.4	1062	aGa/aTa																																																																														
PRDM1	0	MSKCC	GRCh37	6	106554844	106554844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	84	298	0	ENST00000369096.4:c.1961C>T	p.Ser654Phe	p.S654F	ENST00000369096	NM_001198.3	654	tCt/tTt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518133	8518133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	124	294	0	ENST00000356435.5:c.1258G>T	p.Ala420Ser	p.A420S	ENST00000356435		420	Gcc/Tcc																																																																														
KDM5A	0	MSKCC	GRCh37	12	416961	416961	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	100	397	0	ENST00000399788.2:c.3589C>T	p.Gln1197Ter	p.Q1197*	ENST00000399788	NM_001042603.1	1197	Caa/Taa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11095973	11095973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	213	405	0	ENST00000344626.4:c.247G>A	p.Gly83Ser	p.G83S	ENST00000344626	NM_003072.3	83	Ggc/Agc																																																																														
STK11	0	MSKCC	GRCh37	19	1223058	1223058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	192	406	0	ENST00000326873.7:c.996del	p.Trp332CysfsTer4	p.W332Cfs*4	ENST00000326873	NM_000455.4	332	tGg/tg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	21	440	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	259	423	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
FLT4	0	MSKCC	GRCh37	5	180043899	180043899	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	122	631	2	ENST00000261937.6:c.3096+1G>A		p.X1032_splice	ENST00000261937	NM_182925.4	1032																																																																															
PDGFRA	0	MSKCC	GRCh37	4	55131115	55131115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	191	558	1	ENST00000257290.5:c.658G>T	p.Ala220Ser	p.A220S	ENST00000257290	NM_006206.4	220	Gct/Tct																																																																														
XIAP	0	MSKCC	GRCh37	X	123025098	123025098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	150	316	0	ENST00000355640.3:c.988C>G	p.Leu330Val	p.L330V	ENST00000355640		330	Ctg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7579481	7579487	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCTG	GCCTCTG	-			P-0006647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	567	557	0	ENST00000269305.4:c.200_206del	p.Pro67LeufsTer54	p.P67Lfs*54	ENST00000269305	NM_001126112.2	67	cCAGAGGCt/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	128	300	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	150	376	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
IRS1	0	MSKCC	GRCh37	2	227661705	227661705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	194	399	0	ENST00000305123.5:c.1750G>A	p.Glu584Lys	p.E584K	ENST00000305123	NM_005544.2	584	Gag/Aag																																																																														
BAP1	0	MSKCC	GRCh37	3	52440882	52440882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	197	437	2	ENST00000460680.1:c.622C>T	p.Arg208Trp	p.R208W	ENST00000460680	NM_004656.3	208	Cgg/Tgg																																																																														
CD274	0	MSKCC	GRCh37	9	5457087	5457087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	97	312	0	ENST00000381577.3:c.61G>A	p.Val21Ile	p.V21I	ENST00000381577	NM_014143.3	21	Gtc/Atc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740544	58740544	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	444	681	0	ENST00000305921.3:c.1451del	p.Leu484Ter	p.L484*	ENST00000305921	NM_003620.3	483	acT/ac																																																																														
RB1	0	MSKCC	GRCh37	13	48951053	48951053	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	178	306	0	ENST00000267163.4:c.1216-1G>A		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																															
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0006680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	305	403	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0006680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	419	400	1	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156597	55156597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	256	426	0	ENST00000257290.5:c.2998C>A	p.Leu1000Met	p.L1000M	ENST00000257290	NM_006206.4	1000	Ctg/Atg																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871021	12871036	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTGCCCGAGTTCTA	GCTTGCCCGAGTTCTA	AG			P-0006680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	28	297	0	ENST00000228872.4:c.248_263delinsAG	p.Ser83LysfsTer37	p.S83Kfs*37	ENST00000228872	NM_004064.3	83	aGCTTGCCCGAGTTCTAc/aAGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	288	513	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	206	435	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	188	440	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139842	55139842	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	267	401	0	ENST00000257290.5:c.1503C>A	p.Cys501Ter	p.C501*	ENST00000257290	NM_006206.4	501	tgC/tgA																																																																														
APC	0	MSKCC	GRCh37	5	112173299	112173299	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	188	386	2	ENST00000257430.4:c.2008A>T	p.Lys670Ter	p.K670*	ENST00000257430	NM_000038.5	670	Aaa/Taa																																																																														
MLL2	0	MSKCC	GRCh37	12	49437167	49437167	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	296	511	0	ENST00000301067.7:c.5512G>T	p.Glu1838Ter	p.E1838*	ENST00000301067	NM_003482.3	1838	Gag/Tag																																																																														
MGA	0	MSKCC	GRCh37	15	42005448	42005448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	483	803	0	ENST00000219905.7:c.3184G>C	p.Ala1062Pro	p.A1062P	ENST00000219905	NM_001164273.1	1062	Gct/Cct																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152217	11152217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	196	393	0	ENST00000344626.4:c.4405G>T	p.Val1469Leu	p.V1469L	ENST00000344626	NM_003072.3	1469	Gtg/Ttg																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271151	26271276	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	GGCTCTTAAAAGAGCCTTTTTAAGTTGGATAGAATTACTGCCCGGAAACCTCTACGCTCTCTCCCCACGAATGCGGCGAGCGAGCTGAATGTCCTTGGGCATGATAGTCACTCGCTTAGCATGGAT	GGCTCTTAAAAGAGCCTTTTTAAGTTGGATAGAATTACTGCCCGGAAACCTCTACGCTCTCTCCCCACGAATGCGGCGAGCGAGCTGAATGTCCTTGGGCATGATAGTCACTCGCTTAGCATGGAT	-			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	374	427	0	ENST00000305910.3:c.337_*51delATCCATGCTAAGCGAGTGACTATCATGCCCAAGGACATTCAGCTCGCTCGCCGCATTCGTGGGGAGAGAGCGTAGAGGTTTCCGGGCAGTAATTCTATCCAACTTAAAAAGGCTCTTTTAAGAGCC		p.*113*	ENST00000305910	NM_003534.2	113																																																																															
SMAD4	0	MSKCC	GRCh37	18	48604788	48604824	+	frameshift_variant	Frame_Shift_Del	DEL	ACGAAGTACTTCATACCATGCCGATTGCAGACCCACA	ACGAAGTACTTCATACCATGCCGATTGCAGACCCACA	-			P-0006708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	135	468	0	ENST00000342988.3:c.1612_1648del	p.Glu538LeufsTer2	p.E538Lfs*2	ENST00000342988	NM_005359.5	537	gACGAAGTACTTCATACCATGCCGATTGCAGACCCACAa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	309	575	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	213	338	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0006715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	291	465	3	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
PLK2	0	MSKCC	GRCh37	5	57750417	57750417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	261	540	0	ENST00000274289.3:c.2051G>A	p.Cys684Tyr	p.C684Y	ENST00000274289	NM_006622.3	684	tGt/tAt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59763269	59763269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	307	514	0	ENST00000259008.2:c.2833G>A	p.Glu945Lys	p.E945K	ENST00000259008	NM_032043.2	945	Gaa/Aaa																																																																														
MED12	0	MSKCC	GRCh37	X	70348181	70348181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	366	315	0	ENST00000374080.3:c.3245C>G	p.Thr1082Ser	p.T1082S	ENST00000374080		1082	aCc/aGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	86	394	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
SDHD	0	MSKCC	GRCh37	11	111957665	111957665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28937576		P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	131	512	0	ENST00000375549.3:c.34G>A	p.Gly12Ser	p.G12S	ENST00000375549	NM_003002.3	12	Ggt/Agt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056281	27056281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	56	378	0	ENST00000324856.7:c.1277C>T	p.Thr426Ile	p.T426I	ENST00000324856	NM_006015.4	426	aCc/aTc																																																																														
DDR2	0	MSKCC	GRCh37	1	162724433	162724433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	49	388	0	ENST00000367921.3:c.205G>T	p.Asp69Tyr	p.D69Y	ENST00000367921	NM_006182.2	69	Gat/Tat																																																																														
FAT1	0	MSKCC	GRCh37	4	187525561	187525561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	44	508	0	ENST00000441802.2:c.10518G>T	p.Lys3506Asn	p.K3506N	ENST00000441802	NM_005245.3	3506	aaG/aaT																																																																														
CSF1R	0	MSKCC	GRCh37	5	149433699	149433699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	119	470	0	ENST00000286301.3:c.2852T>C	p.Leu951Pro	p.L951P	ENST00000286301	NM_005211.3	951	cTg/cCg																																																																														
HIST1H3A	0	MSKCC	GRCh37	6	26020877	26020877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	208	991	1	ENST00000357647.3:c.160C>T	p.Arg54Cys	p.R54C	ENST00000357647	NM_003529.2	54	Cgt/Tgt																																																																														
HGF	0	MSKCC	GRCh37	7	81335007	81335007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	133	368	0	ENST00000222390.5:c.1820C>A	p.Pro607His	p.P607H	ENST00000222390	NM_000601.4	607	cCt/cAt																																																																														
XRCC2	0	MSKCC	GRCh37	7	152346389	152346389	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	122	665	4	ENST00000359321.1:c.181C>A	p.Leu61Ile	p.L61I	ENST00000359321	NM_005431.1	61	Cta/Ata																																																																														
WT1	0	MSKCC	GRCh37	11	32449578	32449578	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	99	495	0	ENST00000332351.3:c.796C>G	p.Pro266Ala	p.P266A	ENST00000332351	NM_024426.4	266	Ccg/Gcg																																																																														
CDK8	0	MSKCC	GRCh37	13	26971288	26971288	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	71	362	0	ENST00000381527.3:c.861-2A>C		p.X287_splice	ENST00000381527	NM_001260.1	287																																																																															
NF1	0	MSKCC	GRCh37	17	29586147	29586147	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	54	267	0	ENST00000358273.4:c.4430G>C	p.Arg1477Thr	p.R1477T	ENST00000358273	NM_001042492.2	1477	aGg/aCg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561000	9561000	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	50	385	0	ENST00000353224.5:c.782T>A	p.Leu261Gln	p.L261Q	ENST00000353224	NM_177990.2	261	cTg/cAg																																																																														
ARAF	0	MSKCC	GRCh37	X	47422721	47422721	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	96	435	0	ENST00000377045.4:c.193A>G	p.Ile65Val	p.I65V	ENST00000377045	NM_001654.4	65	Atc/Gtc																																																																														
DIS3	0	MSKCC	GRCh37	13	73346863	73346864	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	174	328	0	ENST00000377767.4:c.1353dup	p.Leu452SerfsTer10	p.L452Sfs*10	ENST00000377767	NM_014953.3	451	-/T																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	261	223	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	2122	556	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486101	8486101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	98	601	0	ENST00000356435.5:c.2716G>A	p.Glu906Lys	p.E906K	ENST00000356435		906	Gag/Aag																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24135805	24135805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	89	662	0	ENST00000263121.7:c.292G>A	p.Glu98Lys	p.E98K	ENST00000263121	NM_003073.3	98	Gag/Aag																																																																														
MTOR	0	MSKCC	GRCh37	1	11259353	11259353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	108	659	0	ENST00000361445.4:c.4215G>C	p.Gln1405His	p.Q1405H	ENST00000361445	NM_004958.3	1405	caG/caC																																																																														
SPEN	0	MSKCC	GRCh37	1	16174617	16174617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	73	383	0	ENST00000375759.3:c.55G>A	p.Glu19Lys	p.E19K	ENST00000375759	NM_015001.2	19	Gaa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27059194	27059194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	81	657	1	ENST00000324856.7:c.1831C>T	p.Gln611Ter	p.Q611*	ENST00000324856	NM_006015.4	611	Cag/Tag																																																																														
JAK1	0	MSKCC	GRCh37	1	65307143	65307143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	278	473	1	ENST00000342505.4:c.2545G>A	p.Glu849Lys	p.E849K	ENST00000342505	NM_002227.2	849	Gaa/Aaa																																																																														
SDHC	0	MSKCC	GRCh37	1	161326473	161326473	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	183	462	0	ENST00000367975.2:c.248C>G	p.Ser83Cys	p.S83C	ENST00000367975	NM_003001.3	83	tCt/tGt																																																																														
KIT	0	MSKCC	GRCh37	4	55573292	55573292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	165	504	0	ENST00000288135.5:c.954G>A	p.Met318Ile	p.M318I	ENST00000288135	NM_000222.2	318	atG/atA																																																																														
RICTOR	0	MSKCC	GRCh37	5	38967455	38967455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	192	431	1	ENST00000357387.3:c.1135C>T	p.His379Tyr	p.H379Y	ENST00000357387	NM_152756.3	379	Cat/Tat																																																																														
MLL3	0	MSKCC	GRCh37	7	151873357	151873357	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	243	578	0	ENST00000262189.6:c.9181C>G	p.Gln3061Glu	p.Q3061E	ENST00000262189	NM_170606.2	3061	Caa/Gaa																																																																														
MLL3	0	MSKCC	GRCh37	7	151873683	151873683	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	144	379	0	ENST00000262189.6:c.8855C>G	p.Ser2952Ter	p.S2952*	ENST00000262189	NM_170606.2	2952	tCa/tGa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738284	145738284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	129	382	0	ENST00000428558.2:c.2701G>C	p.Glu901Gln	p.E901Q	ENST00000428558	NM_004260.3	901	Gag/Cag																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710691	114710691	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	297	694	1	ENST00000543371.1:c.176C>A	p.Ser59Tyr	p.S59Y	ENST00000543371	NM_001198531.1	59	tCc/tAc																																																																														
ATM	0	MSKCC	GRCh37	11	108143509	108143509	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	95	666	4	ENST00000278616.4:c.3214G>T	p.Glu1072Ter	p.E1072*	ENST00000278616	NM_000051.3	1072	Gaa/Taa																																																																														
ATM	0	MSKCC	GRCh37	11	108188227	108188227	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	181	496	0	ENST00000278616.4:c.6326G>A	p.Trp2109Ter	p.W2109*	ENST00000278616	NM_000051.3	2109	tGg/tAg																																																																														
MLL2	0	MSKCC	GRCh37	12	49432435	49432435	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	230	559	0	ENST00000301067.7:c.8704C>T	p.Gln2902Ter	p.Q2902*	ENST00000301067	NM_003482.3	2902	Cag/Tag																																																																														
FLT3	0	MSKCC	GRCh37	13	28608294	28608294	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	68	587	0	ENST00000241453.7:c.1762G>C	p.Glu588Gln	p.E588Q	ENST00000241453	NM_004119.2	588	Gag/Cag																																																																														
RB1	0	MSKCC	GRCh37	13	48954353	48954353	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	293	361	0	ENST00000267163.4:c.1474G>T	p.Glu492Ter	p.E492*	ENST00000267163	NM_000321.2	492	Gag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29556886	29556886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	100	286	1	ENST00000358273.4:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000358273	NM_001042492.2	962	Gaa/Aaa																																																																														
CDK12	0	MSKCC	GRCh37	17	37667843	37667843	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	961	721	0	ENST00000447079.4:c.2728G>C	p.Glu910Gln	p.E910Q	ENST00000447079	NM_015083.1	910	Gag/Cag																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37872138	37872138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375382055		P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	2114	556	1	ENST00000269571.5:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000269571		487	Cgg/Tgg																																																																														
TCF3	0	MSKCC	GRCh37	19	1619461	1619461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	145	403	0	ENST00000344749.5:c.1180G>C	p.Glu394Gln	p.E394Q	ENST00000344749	NM_001136139.2	394	Gaa/Caa																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18278007	18278007	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	42	523	0	ENST00000222254.8:c.1627G>C	p.Glu543Gln	p.E543Q	ENST00000222254	NM_005027.3	543	Gag/Cag																																																																														
TOP1	0	MSKCC	GRCh37	20	39751860	39751860	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	87	608	1	ENST00000361337.2:c.2221G>T	p.Glu741Ter	p.E741*	ENST00000361337	NM_003286.2	741	Gag/Tag																																																																														
RBM10	0	MSKCC	GRCh37	X	47040686	47040686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	267	726	0	ENST00000329236.7:c.1087G>A	p.Asp363Asn	p.D363N	ENST00000329236	NM_001204466.1	363	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7578541	7578562	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGCAGGGGAGTACTGTAGGA	AGGGCAGGGGAGTACTGTAGGA	-			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	181	467	1	ENST00000269305.4:c.376-8_389del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
STAT5B	0	MSKCC	GRCh37	17	40384156	40384156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	199	598	0	ENST00000293328.3:c.-10-1G>A		p.X4_splice	ENST00000293328	NM_012448.3	4																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	332	381	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	162	192	0				ENST00000310581	NM_198253.2																																																																																
PAK7	0	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	205	445	0	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923318	9923318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	183	513	0	ENST00000330684.3:c.1969G>A	p.Glu657Lys	p.E657K	ENST00000330684	NM_001134407.1	657	Gaa/Aaa																																																																														
MDM4	0	MSKCC	GRCh37	1	204494660	204494660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	385	419	0	ENST00000367182.3:c.14C>T	p.Ser5Phe	p.S5F	ENST00000367182	NM_001278516.1	5	tCc/tTc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248500	212248500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	245	615	0	ENST00000342788.4:c.3767C>T	p.Pro1256Leu	p.P1256L	ENST00000342788	NM_005235.2	1256	cCa/cTa																																																																														
TP63	0	MSKCC	GRCh37	3	189612212	189612212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	197	400	0	ENST00000264731.3:c.1964G>A	p.Arg655Gln	p.R655Q	ENST00000264731	NM_003722.4	655	cGa/cAa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156501	55156501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	192	399	0	ENST00000257290.5:c.2902G>A	p.Asp968Asn	p.D968N	ENST00000257290	NM_006206.4	968	Gac/Aac																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55161330	55161330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	191	421	2	ENST00000257290.5:c.3161C>T	p.Ser1054Phe	p.S1054F	ENST00000257290	NM_006206.4	1054	tCc/tTc																																																																														
GLI1	0	MSKCC	GRCh37	12	57858626	57858626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	250	593	0	ENST00000228682.2:c.364G>A	p.Gly122Ser	p.G122S	ENST00000228682	NM_005269.2	122	Ggt/Agt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99472793	99472793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			6978	3796	416	0	ENST00000268035.6:c.2789A>G	p.Tyr930Cys	p.Y930C	ENST00000268035	NM_000875.3	930	tAt/tGt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3901001	3901001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	191	367	0	ENST00000262367.5:c.95C>T	p.Ser32Leu	p.S32L	ENST00000262367	NM_004380.2	32	tCa/tTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858558	9858558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	197	568	0	ENST00000330684.3:c.2843C>T	p.Ser948Phe	p.S948F	ENST00000330684	NM_001134407.1	948	tCc/tTc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5218804	5218804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1353	174	446	0	ENST00000357368.4:c.3929C>T	p.Pro1310Leu	p.P1310L	ENST00000357368	NM_002850.3	1310	cCc/cTc																																																																														
STAG2	0	MSKCC	GRCh37	X	123176481	123176481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	524	590	0	ENST00000218089.9:c.448G>A	p.Glu150Lys	p.E150K	ENST00000218089	NM_001042749.1	150	Gaa/Aaa																																																																														
STAG2	0	MSKCC	GRCh37	X	123217326	123217327	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	400	581	0	ENST00000218089.9:c.2980_2981delinsTT	p.Pro994Phe	p.P994F	ENST00000218089	NM_001042749.1	994	CCt/TTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0006735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	325	392	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0006735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	173	617	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
NRAS	0	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	338	475	0	ENST00000369535.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000369535	NM_002524.4	13	Ggt/Tgt																																																																														
MYC	0	MSKCC	GRCh37	8	128751020	128751020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1580	134	323	0	ENST00000377970.2:c.557G>A	p.Cys186Tyr	p.C186Y	ENST00000377970	NM_002467.4	186	tGc/tAc																																																																														
BCL6	0	MSKCC	GRCh37	3	187451432	187451432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1428	425	522	0	ENST00000232014.4:c.50A>T	p.Asp17Val	p.D17V	ENST00000232014	NM_001130845.1	17	gAt/gTt																																																																														
CARD11	0	MSKCC	GRCh37	7	2983930	2983930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	497	790	0	ENST00000396946.4:c.600C>A	p.Asp200Glu	p.D200E	ENST00000396946	NM_032415.4	200	gaC/gaA																																																																														
MLL2	0	MSKCC	GRCh37	12	49445007	49445007	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	164	259	0	ENST00000301067.7:c.2459A>C	p.Glu820Ala	p.E820A	ENST00000301067	NM_003482.3	820	gAg/gCg																																																																														
TP53	0	MSKCC	GRCh37	17	7576397	7576978	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCCAAAAAAAAAAAAAAAAAAAGCAGGCTAGGCTAAGCTATGATGTTCCTTAGATTAGGTGTATTAAATCCATTTTCAACTTACAATATTTTCAACTTACGACGAGTTTATCAGGAAGTAACACCATCGTAAGTCAAGTAGCATCTGTATCAGGCAAAGTCATAGAACCATTTTCATGCTCTCTTTAACAATTTTCTTTTTGAAAGCTGGTCTGGTCCTTTAAAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCA	CCCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCCAAAAAAAAAAAAAAAAAAAGCAGGCTAGGCTAAGCTATGATGTTCCTTAGATTAGGTGTATTAAATCCATTTTCAACTTACAATATTTTCAACTTACGACGAGTTTATCAGGAAGTAACACCATCGTAAGTCAAGTAGCATCTGTATCAGGCAAAGTCATAGAACCATTTTCATGCTCTCTTTAACAATTTTCTTTTTGAAAGCTGGTCTGGTCCTTTAAAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCA	-			P-0006741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3	106	3	0	ENST00000269305.4:c.919+41_993+456del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
GATA3	0	MSKCC	GRCh37	10	8115861	8115862	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAG			P-0006741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	450	667	1	ENST00000346208.3:c.1208_1211dup	p.His405GlufsTer103	p.H405Efs*103	ENST00000346208		403	ctg/cTGAGtg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	67	484	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	74	331	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	36	153	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	36	153	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032404	10032404	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142566406		P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	17	146	0	ENST00000330684.3:c.419C>T	p.Pro140Leu	p.P140L	ENST00000330684	NM_001134407.1	140	cCg/cTg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	78	465	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170217	32170217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	50	397	0	ENST00000375023.3:c.3391C>T	p.Pro1131Ser	p.P1131S	ENST00000375023	NM_004557.3	1131	Cct/Tct																																																																														
CREBBP	0	MSKCC	GRCh37	16	3790512	3790512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	78	386	1	ENST00000262367.5:c.4021C>T	p.Arg1341Ter	p.R1341*	ENST00000262367	NM_004380.2	1341	Cga/Tga																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678572	88678572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	44	205	0	ENST00000360948.2:c.964G>A	p.Glu322Lys	p.E322K	ENST00000360948	NM_001012338.2	322	Gag/Aag																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967209	93967209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	62	584	0	ENST00000369303.4:c.2143G>A	p.Glu715Lys	p.E715K	ENST00000369303	NM_004440.3	715	Gaa/Aaa																																																																														
INSR	0	MSKCC	GRCh37	19	7143079	7143079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138897740		P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	33	245	0	ENST00000302850.5:c.2290C>T	p.Leu764Phe	p.L764F	ENST00000302850	NM_000208.2	764	Ctt/Ttt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169074	32169074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	74	436	0	ENST00000375023.3:c.3959C>T	p.Ser1320Phe	p.S1320F	ENST00000375023	NM_004557.3	1320	tCc/tTc																																																																														
MTOR	0	MSKCC	GRCh37	1	11184649	11184649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	100	491	0	ENST00000361445.4:c.6568G>A	p.Glu2190Lys	p.E2190K	ENST00000361445	NM_004958.3	2190	Gaa/Aaa																																																																														
SPEN	0	MSKCC	GRCh37	1	16261091	16261091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	40	239	0	ENST00000375759.3:c.8356C>T	p.His2786Tyr	p.H2786Y	ENST00000375759	NM_015001.2	2786	Cac/Tac																																																																														
ID3	0	MSKCC	GRCh37	1	23885626	23885626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1196	271	606	0	ENST00000374561.5:c.292C>T	p.Pro98Ser	p.P98S	ENST00000374561	NM_002167.4	98	Ccc/Tcc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120469121	120469121	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	136	354	0	ENST00000256646.2:c.4005+1G>C		p.X1335_splice	ENST00000256646	NM_024408.3	1335																																																																															
ALK	0	MSKCC	GRCh37	2	29473997	29473997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	66	426	0	ENST00000389048.3:c.2178G>A	p.Trp726Ter	p.W726*	ENST00000389048	NM_004304.4	726	tgG/tgA																																																																														
EPCAM	0	MSKCC	GRCh37	2	47606095	47606095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	93	332	0	ENST00000263735.4:c.559G>A	p.Glu187Lys	p.E187K	ENST00000263735	NM_002354.2	187	Gag/Aag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212295704	212295704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	41	402	0	ENST00000342788.4:c.2609G>A	p.Gly870Glu	p.G870E	ENST00000342788	NM_005235.2	870	gGa/gAa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212587251	212587251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	47	330	1	ENST00000342788.4:c.750G>A	p.Met250Ile	p.M250I	ENST00000342788	NM_005235.2	250	atG/atA																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729962	30729962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	40	339	0	ENST00000359013.4:c.1558C>T	p.Arg520Ter	p.R520*	ENST00000359013	NM_001024847.2	520	Cga/Tga																																																																														
RHOA	0	MSKCC	GRCh37	3	49400051	49400051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	59	413	0	ENST00000418115.1:c.286C>T	p.Pro96Ser	p.P96S	ENST00000418115	NM_001664.2	96	Cca/Tca																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259521	89259521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	43	341	1	ENST00000336596.2:c.665C>T	p.Ser222Phe	p.S222F	ENST00000336596	NM_005233.5	222	tCc/tTc																																																																														
GSK3B	0	MSKCC	GRCh37	3	119582310	119582310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	36	342	0	ENST00000316626.5:c.1091C>T	p.Pro364Leu	p.P364L	ENST00000316626		364	cCa/cTa																																																																														
KDR	0	MSKCC	GRCh37	4	55953926	55953926	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	70	251	0	ENST00000263923.4:c.3511-1G>A		p.X1171_splice	ENST00000263923	NM_002253.2	1171																																																																															
NSD1	0	MSKCC	GRCh37	5	176694631	176694631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	71	527	1	ENST00000439151.2:c.5215C>T	p.Pro1739Ser	p.P1739S	ENST00000439151	NM_022455.4	1739	Cct/Tct																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032017	26032017	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2022	127	908	0	ENST00000244661.2:c.272T>A	p.Met91Lys	p.M91K	ENST00000244661	NM_003537.3	91	aTg/aAg																																																																														
MDC1	0	MSKCC	GRCh37	6	30673196	30673196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1176	77	509	0	ENST00000376406.3:c.3764C>T	p.Ser1255Phe	p.S1255F	ENST00000376406	NM_014641.2	1255	tCc/tTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120631	94120631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1321	101	758	0	ENST00000369303.4:c.420A>T	p.Glu140Asp	p.E140D	ENST00000369303	NM_004440.3	140	gaA/gaT																																																																														
ROS1	0	MSKCC	GRCh37	6	117686895	117686895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	49	341	2	ENST00000368508.3:c.2822C>T	p.Ser941Phe	p.S941F	ENST00000368508	NM_002944.2	941	tCc/tTc																																																																														
PARK2	0	MSKCC	GRCh37	6	162683747	162683747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	54	384	0	ENST00000366898.1:c.222G>A	p.Trp74Ter	p.W74*	ENST00000366898	NM_004562.2	74	tgG/tgA																																																																														
EGFR	0	MSKCC	GRCh37	7	55232991	55232991	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	71	431	1	ENST00000275493.2:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000275493	NM_005228.3	581	Cag/Tag																																																																														
HGF	0	MSKCC	GRCh37	7	81332061	81332061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	42	335	0	ENST00000222390.5:c.2023G>A	p.Gly675Ser	p.G675S	ENST00000222390	NM_000601.4	675	Ggc/Agc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399985	139399985	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	112	478	1	ENST00000277541.6:c.4363C>T	p.Gln1455Ter	p.Q1455*	ENST00000277541	NM_017617.3	1455	Cag/Tag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139407962	139407962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	125	378	0	ENST00000277541.6:c.2235G>A	p.Trp745Ter	p.W745*	ENST00000277541	NM_017617.3	745	tgG/tgA																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139417402	139417402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	141	502	0	ENST00000277541.6:c.642C>A	p.Asn214Lys	p.N214K	ENST00000277541	NM_017617.3	214	aaC/aaA																																																																														
TRAF2	0	MSKCC	GRCh37	9	139793323	139793323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	87	544	1	ENST00000247668.2:c.131C>T	p.Pro44Leu	p.P44L	ENST00000247668	NM_021138.3	44	cCc/cTc																																																																														
RET	0	MSKCC	GRCh37	10	43615063	43615063	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	67	466	0	ENST00000355710.3:c.2477A>T	p.Tyr826Phe	p.Y826F	ENST00000355710	NM_020975.4	826	tAc/tTc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94203678	94203678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	55	337	0	ENST00000323929.3:c.976C>T	p.Pro326Ser	p.P326S	ENST00000323929	NM_005591.3	326	Cct/Tct																																																																														
MLL2	0	MSKCC	GRCh37	12	49431944	49431944	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	57	352	0	ENST00000301067.7:c.9195C>G	p.Ile3065Met	p.I3065M	ENST00000301067	NM_003482.3	3065	atC/atG																																																																														
MLL2	0	MSKCC	GRCh37	12	49434751	49434751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	111	375	0	ENST00000301067.7:c.6802G>A	p.Ala2268Thr	p.A2268T	ENST00000301067	NM_003482.3	2268	Gct/Act																																																																														
IGF1	0	MSKCC	GRCh37	12	102811664	102811664	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	61	505	1	ENST00000307046.8:c.520A>T	p.Lys174Ter	p.K174*	ENST00000307046	NM_001111285.1	174	Aag/Tag																																																																														
FLT3	0	MSKCC	GRCh37	13	28623625	28623625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	69	339	0	ENST00000241453.7:c.932G>A	p.Arg311Gln	p.R311Q	ENST00000241453	NM_004119.2	311	cGg/cAg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32900709	32900709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	53	486	0	ENST00000380152.3:c.590C>T	p.Ser197Phe	p.S197F	ENST00000380152		197	tCt/tTt																																																																														
AXIN1	0	MSKCC	GRCh37	16	343666	343666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1413	189	696	1	ENST00000262320.3:c.2008C>T	p.Leu670Phe	p.L670F	ENST00000262320	NM_003502.3	670	Ctt/Ttt																																																																														
TRAF7	0	MSKCC	GRCh37	16	2223220	2223220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	64	485	0	ENST00000326181.6:c.832C>T	p.His278Tyr	p.H278Y	ENST00000326181	NM_032271.2	278	Cac/Tac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900354	3900354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	61	444	0	ENST00000262367.5:c.742C>T	p.Pro248Ser	p.P248S	ENST00000262367	NM_004380.2	248	Ccg/Tcg																																																																														
PALB2	0	MSKCC	GRCh37	16	23641773	23641773	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	46	312	0	ENST00000261584.4:c.1702C>G	p.Gln568Glu	p.Q568E	ENST00000261584	NM_024675.3	568	Caa/Gaa																																																																														
NUP93	0	MSKCC	GRCh37	16	56852603	56852603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	71	679	0	ENST00000308159.5:c.517C>T	p.Pro173Ser	p.P173S	ENST00000308159	NM_014669.4	173	Cct/Tct																																																																														
CDH1	0	MSKCC	GRCh37	16	68853245	68853245	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148400889		P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	82	493	1	ENST00000261769.5:c.1628C>T	p.Ser543Phe	p.S543F	ENST00000261769	NM_004360.3	543	tCc/tTc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2223335	2223335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1229	87	530	0	ENST00000398665.3:c.3446C>T	p.Ser1149Phe	p.S1149F	ENST00000398665	NM_032482.2	1149	tCc/tTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15295202	15295202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	58	531	1	ENST00000263388.2:c.2470G>A	p.Gly824Ser	p.G824S	ENST00000263388	NM_000435.2	824	Ggt/Agt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021608	31021608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	34	127	0	ENST00000375687.4:c.1607C>T	p.Pro536Leu	p.P536L	ENST00000375687	NM_015338.5	536	cCc/cTc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264899	46264899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1734	183	915	3	ENST00000371998.3:c.1769G>A	p.Arg590Lys	p.R590K	ENST00000371998		590	aGa/aAa																																																																														
BCOR	0	MSKCC	GRCh37	X	39914714	39914714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	88	357	0	ENST00000378444.4:c.4648C>A	p.Leu1550Ile	p.L1550I	ENST00000378444	NM_001123385.1	1550	Ctc/Atc																																																																														
AR	0	MSKCC	GRCh37	X	66943642	66943642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	63	288	0	ENST00000374690.3:c.2722C>T	p.Leu908Phe	p.L908F	ENST00000374690	NM_000044.3	908	Ctt/Ttt																																																																														
MED12	0	MSKCC	GRCh37	X	70341625	70341625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	79	238	0	ENST00000374080.3:c.1060C>G	p.Gln354Glu	p.Q354E	ENST00000374080		354	Cag/Gag																																																																														
ATRX	0	MSKCC	GRCh37	X	76938628	76938628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	134	302	0	ENST00000373344.5:c.2120C>T	p.Ala707Val	p.A707V	ENST00000373344	NM_000489.3	707	gCt/gTt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716037	52716037	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1378	77	536	0	ENST00000322088.6:c.602del	p.Val201AlafsTer29	p.V201Afs*29	ENST00000322088	NM_014225.5	201	gTc/gc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022309	31022309	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	102	263	2	ENST00000375687.4:c.1797del	p.Thr600ProfsTer103	p.T600Pfs*103	ENST00000375687	NM_015338.5	598	atC/at																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439922	51439923	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	44	168	0	ENST00000262662.1:c.487_488delinsAA	p.Gly163Lys	p.G163K	ENST00000262662		163	GGa/AAa																																																																														
ROS1	0	MSKCC	GRCh37	6	117631414	117631415	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	44	390	0	ENST00000368508.3:c.6263_6264delinsTT	p.Ser2088Phe	p.S2088F	ENST00000368508	NM_002944.2	2088	tCC/tTT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8501020	8501021	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	37	406	0	ENST00000356435.5:c.1861_1862delinsTT	p.Pro621Leu	p.P621L	ENST00000356435		621	CCa/TTa																																																																														
TRAF7	0	MSKCC	GRCh37	16	2222336	2222337	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	59	396	2	ENST00000326181.6:c.620_621delinsTT	p.Pro207Leu	p.P207L	ENST00000326181	NM_032271.2	207	cCC/cTT																																																																														
FANCA	0	MSKCC	GRCh37	16	89816248	89816249	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	67	527	0	ENST00000389301.3:c.3128_3129delinsTT	p.Ser1043Phe	p.S1043F	ENST00000389301	NM_000135.2	1043	tCC/tTT																																																																														
TP53	0	MSKCC	GRCh37	17	7579414	7579415	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	93	345	1	ENST00000269305.4:c.272_273delinsAA	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGG/tAA																																																																														
ERG	0	MSKCC	GRCh37	21	39755530	39755531	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	79	388	1	ENST00000288319.7:c.1234_1235delinsTT	p.Pro412Phe	p.P412F	ENST00000288319	NM_182918.3	412	CCc/TTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	111	759	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SOX17	0	MSKCC	GRCh37	8	55372127	55372127	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	17	209	0	ENST00000297316.4:c.817C>T	p.Arg273Ter	p.R273*	ENST00000297316	NM_022454.3	273	Cga/Tga																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851684	134851684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	64	550	0	ENST00000398015.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000398015	NM_004441.4	364	Cgg/Tgg																																																																														
MLL3	0	MSKCC	GRCh37	7	151949106	151949106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	44	600	0	ENST00000262189.6:c.1539C>G	p.Ile513Met	p.I513M	ENST00000262189	NM_170606.2	513	atC/atG																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741636	17741636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	40	286	0	ENST00000250003.3:c.307C>T	p.Arg103Cys	p.R103C	ENST00000250003	NM_002478.4	103	Cgc/Tgc																																																																														
MGA	0	MSKCC	GRCh37	15	42005434	42005434	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	186	1049	0	ENST00000219905.7:c.3170T>A	p.Val1057Glu	p.V1057E	ENST00000219905	NM_001164273.1	1057	gTa/gAa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992422	72992422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1276	101	1123	0	ENST00000268489.5:c.1623G>C	p.Gln541His	p.Q541H	ENST00000268489	NM_006885.3	541	caG/caC																																																																														
POLD1	0	MSKCC	GRCh37	19	50905617	50905617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1182	103	802	0	ENST00000440232.2:c.745G>T	p.Asp249Tyr	p.D249Y	ENST00000440232	NM_002691.3	249	Gac/Tac																																																																														
APC	0	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0006761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	28	332	0	ENST00000257430.4:c.3925_3926del	p.Glu1309LysfsTer5	p.E1309Kfs*5	ENST00000257430	NM_000038.5	1309	GAa/a																																																																														
DNMT1	0	MSKCC	GRCh37	19	10250821	10250821	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	455	369	0	ENST00000340748.4:c.3659T>C	p.Leu1220Pro	p.L1220P	ENST00000340748		1220	cTg/cCg																																																																														
AKT2	0	MSKCC	GRCh37	19	40742225	40742225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2987	256	479	1	ENST00000392038.2:c.899G>A	p.Gly300Asp	p.G300D	ENST00000392038	NM_001626.4	300	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577107	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	496	491	0	ENST00000269305.4:c.831dup	p.Pro278SerfsTer28	p.P278Sfs*28	ENST00000269305	NM_001126112.2	277	-/T																																																																														
TET1	0	MSKCC	GRCh37	10	70332776	70332776	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	131	347	0	ENST00000373644.4:c.681del	p.Phe228SerfsTer6	p.F228Sfs*6	ENST00000373644	NM_030625.2	227	ctA/ct																																																																														
FH	0	MSKCC	GRCh37	1	241683016	241683016	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs202166344		P-0006788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	168	365	0	ENST00000366560.3:c.7C>G	p.Arg3Gly	p.R3G	ENST00000366560	NM_000143.3	3	Cga/Gga																																																																														
SETD2	0	MSKCC	GRCh37	3	47139573	47139573	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0006788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	143	299	0	ENST00000409792.3:c.5016-2A>C		p.X1672_splice	ENST00000409792	NM_014159.6	1672																																																																															
KDR	0	MSKCC	GRCh37	4	55962489	55962489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	213	423	0	ENST00000263923.4:c.2635C>T	p.His879Tyr	p.H879Y	ENST00000263923	NM_002253.2	879	Cat/Tat																																																																														
IGF2	0	MSKCC	GRCh37	11	2161457	2161457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	92	483	0	ENST00000434045.2:c.70C>A	p.Arg24Ser	p.R24S	ENST00000434045	NM_001127598.1	24	Cgc/Agc																																																																														
NF1	0	MSKCC	GRCh37	17	29490304	29490304	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	251	462	0	ENST00000358273.4:c.389A>T	p.His130Leu	p.H130L	ENST00000358273	NM_001042492.2	130	cAt/cTt																																																																														
CRLF2	0	MSKCC	GRCh37	X	1325427	1325427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	105	463	1	ENST00000381566.1:c.248G>T	p.Gly83Val	p.G83V	ENST00000381566		83	gGg/gTg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53230877	53230878	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0006788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	221	268	0	ENST00000375401.3:c.1915_1916del	p.Tyr639LeufsTer6	p.Y639Lfs*6	ENST00000375401	NM_004187.3	639	TAc/c																																																																														
VHL	0	MSKCC	GRCh37	3	10183854	10183862	+	inframe_deletion	In_Frame_Del	DEL	GCATCCACA	GCATCCACA	-			P-0006788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	44	222	0	ENST00000256474.2:c.325_333del	p.Ile109_Ser111del	p.I109_S111del	ENST00000256474	NM_000551.3	108	cGCATCCACAgc/cgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	33	510	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	33	577	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
TET1	0	MSKCC	GRCh37	10	70451486	70451486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	40	673	0	ENST00000373644.4:c.6326C>T	p.Ala2109Val	p.A2109V	ENST00000373644	NM_030625.2	2109	gCa/gTa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	75	716	0	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																														
ARAF	0	MSKCC	GRCh37	X	47428131	47428132	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAACATC			P-0006794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	50	539	0	ENST00000377045.4:c.1092_1098dup	p.Leu367GlnfsTer22	p.L367Qfs*22	ENST00000377045	NM_001654.4	364	gtc/gtCAACATCc																																																																														
APC	0	MSKCC	GRCh37	5	112175596	112175597	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0006794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	35	694	0	ENST00000257430.4:c.4306_4307dup	p.Ser1436ArgfsTer38	p.S1436Rfs*38	ENST00000257430	NM_000038.5	1435	-/AG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	369	290	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RAD51C	0	MSKCC	GRCh37	17	56774148	56774148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	179	519	1	ENST00000337432.4:c.499G>A	p.Asp167Asn	p.D167N	ENST00000337432	NM_058216.2	167	Gat/Aat																																																																														
CDK8	0	MSKCC	GRCh37	13	26975471	26975472	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0006806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	232	238	1	ENST00000381527.3:c.1098_1099del	p.Asp366GlufsTer14	p.D366Efs*14	ENST00000381527	NM_001260.1	366	gAC/g																																																																														
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	332	554	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NTRK1	0	MSKCC	GRCh37	1	156837954	156837954	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	115	681	0	ENST00000524377.1:c.487G>C	p.Glu163Gln	p.E163Q	ENST00000524377	NM_002529.3	163	Gag/Cag																																																																														
SOX17	0	MSKCC	GRCh37	8	55372460	55372460	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	145	765	0	ENST00000297316.4:c.1150T>G	p.Ser384Ala	p.S384A	ENST00000297316	NM_022454.3	384	Tcc/Gcc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17742486	17742486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	129	655	0	ENST00000250003.3:c.668G>A	p.Arg223Gln	p.R223Q	ENST00000250003	NM_002478.4	223	cGg/cAg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434166	121434166	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	634	659	1	ENST00000257555.6:c.1057C>A	p.Pro353Thr	p.P353T	ENST00000257555		353	Ccc/Acc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781791	3781791	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	163	569	1	ENST00000262367.5:c.4876G>C	p.Glu1626Gln	p.E1626Q	ENST00000262367	NM_004380.2	1626	Gag/Cag																																																																														
BRIP1	0	MSKCC	GRCh37	17	59858282	59858282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	137	572	0	ENST00000259008.2:c.1713G>C	p.Leu571Phe	p.L571F	ENST00000259008	NM_032043.2	571	ttG/ttC																																																																														
INSR	0	MSKCC	GRCh37	19	7117186	7117186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	194	648	1	ENST00000302850.5:c.4030G>A	p.Asp1344Asn	p.D1344N	ENST00000302850	NM_000208.2	1344	Gat/Aat																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627390	14627390	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144442851		P-0006809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1298	233	1089	0	ENST00000254322.2:c.680C>T	p.Thr227Ile	p.T227I	ENST00000254322	NM_006145.1	227	aCc/aTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944486	40944486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	180	754	0	ENST00000373198.4:c.2016C>A	p.Asn672Lys	p.N672K	ENST00000373198	NM_133170.3	672	aaC/aaA																																																																														
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	197	469	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41748228	41748228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	130	474	1	ENST00000226382.2:c.541G>T	p.Asp181Tyr	p.D181Y	ENST00000226382	NM_003924.3	181	Gac/Tac																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575671	48575672	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	103	230	0	ENST00000342988.3:c.431_432del	p.Ser144TrpfsTer7	p.S144Wfs*7	ENST00000342988	NM_005359.5	144	tCA/t																																																																														
ARID1A	0	MSKCC	GRCh37	1	27097609	27097609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	98	346	0	ENST00000324856.7:c.3199-1G>A		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																																																															
ERCC3	0	MSKCC	GRCh37	2	128050416	128050416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	46	307	1	ENST00000285398.2:c.241G>A	p.Asp81Asn	p.D81N	ENST00000285398	NM_000122.1	81	Gat/Aat																																																																														
SETD2	0	MSKCC	GRCh37	3	47142975	47142975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	63	352	0	ENST00000409792.3:c.4988C>G	p.Thr1663Arg	p.T1663R	ENST00000409792	NM_014159.6	1663	aCg/aGg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921553	178921555	+	missense_variant	Missense_Mutation	ONP	TGT	TGT	AGG			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	63	243	0	ENST00000263967.3:c.1035_1037delinsAGG	p.Asn345_Val346delinsLysGly	p.N345_V346delinsKG	ENST00000263967	NM_006218.2	345	aaTGTa/aaAGGa																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	47	338	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	89	221	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
SOX17	0	MSKCC	GRCh37	8	55371807	55371807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	17	36	0	ENST00000297316.4:c.497C>T	p.Ala166Val	p.A166V	ENST00000297316	NM_022454.3	166	gCg/gTg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114903772	114903772	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	285	574	0	ENST00000543371.1:c.776G>A	p.Trp259Ter	p.W259*	ENST00000543371	NM_001198531.1	259	tGg/tAg																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872041	35872041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	195	605	1	ENST00000216797.5:c.572C>T	p.Ser191Phe	p.S191F	ENST00000216797	NM_020529.2	191	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	277	468	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CIC	0	MSKCC	GRCh37	19	42791995	42791995	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	103	432	0	ENST00000575354.2:c.799T>G	p.Trp267Gly	p.W267G	ENST00000575354	NM_015125.3	267	Tgg/Ggg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44950057	44950057	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	54	559	1	ENST00000377967.4:c.3826A>T	p.Asn1276Tyr	p.N1276Y	ENST00000377967	NM_021140.2	1276	Aat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	442	442	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SETD2	0	MSKCC	GRCh37	3	47098913	47098913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	128	334	0	ENST00000409792.3:c.6361C>T	p.Arg2121Cys	p.R2121C	ENST00000409792	NM_014159.6	2121	Cgc/Tgc																																																																														
MITF	0	MSKCC	GRCh37	3	69928398	69928398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	164	326	0	ENST00000352241.4:c.218G>A	p.Arg73His	p.R73H	ENST00000352241	NM_198159.2	73	cGc/cAc																																																																														
TP63	0	MSKCC	GRCh37	3	189526226	189526226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	242	400	1	ENST00000264731.3:c.490G>A	p.Ala164Thr	p.A164T	ENST00000264731	NM_003722.4	164	Gcc/Acc																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158663	26158663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	10	23	0	ENST00000289316.2:c.266C>G	p.Thr89Ser	p.T89S	ENST00000289316	NM_138720.2	89	aCc/aGc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348504	89348504	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	347	618	0	ENST00000301030.4:c.4446T>A	p.Asp1482Glu	p.D1482E	ENST00000301030	NM_001256183.1	1482	gaT/gaA																																																																														
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	CC			P-0006822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	288	277	0	ENST00000257430.4:c.3964delinsCC	p.Glu1322ProfsTer10	p.E1322Pfs*10	ENST00000257430	NM_000038.5	1322	Gaa/CCaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	581	262	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	1139	453	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
AXL	0	MSKCC	GRCh37	19	41726624	41726624	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	461	487	0	ENST00000301178.4:c.169C>T	p.Gln57Ter	p.Q57*	ENST00000301178	NM_021913.4	57	Cag/Tag																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045688	26045688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2050	298	755	0	ENST00000540144.1:c.50C>T	p.Pro17Leu	p.P17L	ENST00000540144	NM_003531.2	17	cCg/cTg																																																																														
BAP1	0	MSKCC	GRCh37	3	52437669	52437669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	360	583	1	ENST00000460680.1:c.1492G>A	p.Glu498Lys	p.E498K	ENST00000460680	NM_004656.3	498	Gag/Aag																																																																														
RB1	0	MSKCC	GRCh37	13	48954211	48954211	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	215	318	0	ENST00000267163.4:c.1415del	p.Asn472IlefsTer6	p.N472Ifs*6	ENST00000267163	NM_000321.2	471	cAa/ca																																																																														
SETD2	0	MSKCC	GRCh37	3	47165293	47165293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	114	363	0	ENST00000409792.3:c.833C>T	p.Ser278Phe	p.S278F	ENST00000409792	NM_014159.6	278	tCc/tTc																																																																														
SDHB	0	MSKCC	GRCh37	1	17345421	17345421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	184	453	0	ENST00000375499.3:c.798C>G	p.Ile266Met	p.I266M	ENST00000375499	NM_003000.2	266	atC/atG																																																																														
ARID1A	0	MSKCC	GRCh37	1	27102084	27102084	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	517	536	1	ENST00000324856.7:c.5010G>A	p.Trp1670Ter	p.W1670*	ENST00000324856	NM_006015.4	1670	tgG/tgA																																																																														
RAD54L	0	MSKCC	GRCh37	1	46726530	46726530	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	242	438	0	ENST00000371975.4:c.609G>C	p.Gln203His	p.Q203H	ENST00000371975	NM_003579.3	203	caG/caC																																																																														
MDM4	0	MSKCC	GRCh37	1	204506611	204506611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	104	453	0	ENST00000367182.3:c.397C>G	p.Gln133Glu	p.Q133E	ENST00000367182	NM_001278516.1	133	Caa/Gaa																																																																														
PARP1	0	MSKCC	GRCh37	1	226564946	226564946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	192	371	0	ENST00000366794.5:c.1804G>A	p.Glu602Lys	p.E602K	ENST00000366794	NM_001618.3	602	Gaa/Aaa																																																																														
ALK	0	MSKCC	GRCh37	2	29917730	29917730	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	159	414	0	ENST00000389048.3:c.938A>C	p.Lys313Thr	p.K313T	ENST00000389048	NM_004304.4	313	aAg/aCg																																																																														
INHA	0	MSKCC	GRCh37	2	220439878	220439878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1258	282	591	0	ENST00000243786.2:c.731C>G	p.Ser244Cys	p.S244C	ENST00000243786	NM_002191.3	244	tCt/tGt																																																																														
SETD2	0	MSKCC	GRCh37	3	47165134	47165134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	93	264	0	ENST00000409792.3:c.992C>T	p.Ser331Phe	p.S331F	ENST00000409792	NM_014159.6	331	tCt/tTt																																																																														
SETD2	0	MSKCC	GRCh37	3	47165414	47165414	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	163	434	0	ENST00000409792.3:c.712C>G	p.Leu238Val	p.L238V	ENST00000409792	NM_014159.6	238	Ctg/Gtg																																																																														
SETD2	0	MSKCC	GRCh37	3	47165518	47165518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1183	339	647	0	ENST00000409792.3:c.608C>T	p.Ser203Leu	p.S203L	ENST00000409792	NM_014159.6	203	tCa/tTa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139714	55139714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	106	302	0	ENST00000257290.5:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000257290	NM_006206.4	459	Gaa/Aaa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38947418	38947418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	90	420	2	ENST00000357387.3:c.4262C>T	p.Ser1421Leu	p.S1421L	ENST00000357387	NM_152756.3	1421	tCa/tTa																																																																														
RAD50	0	MSKCC	GRCh37	5	131939642	131939642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	122	388	0	ENST00000265335.6:c.2428G>C	p.Ala810Pro	p.A810P	ENST00000265335		810	Gca/Cca																																																																														
RAD50	0	MSKCC	GRCh37	5	131940578	131940578	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	159	463	0	ENST00000265335.6:c.2605G>C	p.Glu869Gln	p.E869Q	ENST00000265335		869	Gag/Cag																																																																														
ROS1	0	MSKCC	GRCh37	6	117631351	117631351	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	116	426	0	ENST00000368508.3:c.6327C>G	p.Ile2109Met	p.I2109M	ENST00000368508	NM_002944.2	2109	atC/atG																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974823	21974823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	51	110	0	ENST00000304494.5:c.4G>A	p.Glu2Lys	p.E2K	ENST00000304494	NM_000077.4	2	Gag/Aag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974823	21974823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	51	110	0	ENST00000304494.5:c.4G>A	p.Glu2Lys	p.E2K	ENST00000304494	NM_000077.4	2	Gag/Aag																																																																														
PGR	0	MSKCC	GRCh37	11	100998756	100998756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	245	538	1	ENST00000325455.5:c.1046C>T	p.Ser349Leu	p.S349L	ENST00000325455	NM_001202474.3	349	tCg/tTg																																																																														
ATM	0	MSKCC	GRCh37	11	108119795	108119795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	154	340	0	ENST00000278616.4:c.1201C>T	p.Gln401Ter	p.Q401*	ENST00000278616	NM_000051.3	401	Cag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108206578	108206578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	99	384	0	ENST00000278616.4:c.8158G>A	p.Asp2720Asn	p.D2720N	ENST00000278616	NM_000051.3	2720	Gat/Aat																																																																														
ATM	0	MSKCC	GRCh37	11	108206650	108206650	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	135	504	0	ENST00000278616.4:c.8230G>T	p.Glu2744Ter	p.E2744*	ENST00000278616	NM_000051.3	2744	Gaa/Taa																																																																														
KDM5A	0	MSKCC	GRCh37	12	495065	495065	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	143	473	0	ENST00000399788.2:c.241G>C	p.Glu81Gln	p.E81Q	ENST00000399788	NM_001042603.1	81	Gag/Cag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18641487	18641487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	136	497	0	ENST00000266497.5:c.2486C>T	p.Ser829Phe	p.S829F	ENST00000266497		829	tCc/tTc																																																																														
MLL2	0	MSKCC	GRCh37	12	49445224	49445224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	187	364	1	ENST00000301067.7:c.2242G>A	p.Glu748Lys	p.E748K	ENST00000301067	NM_003482.3	748	Gag/Aag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495582	56495582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	153	376	0	ENST00000267101.3:c.3772G>A	p.Glu1258Lys	p.E1258K	ENST00000267101	NM_001982.3	1258	Gaa/Aaa																																																																														
CDK8	0	MSKCC	GRCh37	13	26956974	26956974	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	86	294	0	ENST00000381527.3:c.480G>C	p.Met160Ile	p.M160I	ENST00000381527	NM_001260.1	160	atG/atC																																																																														
MAPK3	0	MSKCC	GRCh37	16	30134494	30134494	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	158	312	0	ENST00000263025.4:c.37G>T	p.Glu13Ter	p.E13*	ENST00000263025	NM_002746.2	13	Gag/Tag																																																																														
SRSF2	0	MSKCC	GRCh37	17	74733038	74733038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	190	469	2	ENST00000359995.5:c.205G>A	p.Glu69Lys	p.E69K	ENST00000359995	NM_001195427.1	69	Gag/Aag																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4117593	4117593	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	338	267	0	ENST00000262948.5:c.127G>C	p.Glu43Gln	p.E43Q	ENST00000262948	NM_030662.3	43	Gag/Cag																																																																														
AXL	0	MSKCC	GRCh37	19	41765598	41765598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1310	268	500	0	ENST00000301178.4:c.2474A>G	p.Asp825Gly	p.D825G	ENST00000301178	NM_021913.4	825	gAt/gGt																																																																														
CIC	0	MSKCC	GRCh37	19	42795730	42795730	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	393	424	0	ENST00000575354.2:c.2719C>T	p.Gln907Ter	p.Q907*	ENST00000575354	NM_015125.3	907	Cag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419837	41419837	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	167	330	0	ENST00000373198.4:c.484C>G	p.Gln162Glu	p.Q162E	ENST00000373198	NM_133170.3	162	Cag/Gag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922962	44922962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	277	581	0	ENST00000377967.4:c.1823C>G	p.Pro608Arg	p.P608R	ENST00000377967	NM_021140.2	608	cCt/cGt																																																																														
ATRX	0	MSKCC	GRCh37	X	76907836	76907836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	79	191	0	ENST00000373344.5:c.4325C>T	p.Ser1442Phe	p.S1442F	ENST00000373344	NM_000489.3	1442	tCt/tTt																																																																														
BTK	0	MSKCC	GRCh37	X	100614317	100614317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	227	525	1	ENST00000308731.7:c.858G>A	p.Met286Ile	p.M286I	ENST00000308731	NM_000061.2	286	atG/atA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	1208	465	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KDR	0	MSKCC	GRCh37	4	55948705	55948705	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	249	291	2	ENST00000263923.4:c.3760G>C	p.Asp1254His	p.D1254H	ENST00000263923	NM_002253.2	1254	Gat/Cat																																																																														
MYC	0	MSKCC	GRCh37	8	128752670	128752670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2767	193	436	0	ENST00000377970.2:c.831C>G	p.Ile277Met	p.I277M	ENST00000377970	NM_002467.4	277	atC/atG																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18277079	18277079	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2226	249	549	0	ENST00000222254.8:c.1526T>A	p.Phe509Tyr	p.F509Y	ENST00000222254	NM_005027.3	509	tTc/tAc																																																																														
AURKA	0	MSKCC	GRCh37	20	54945240	54945240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	148	319	0	ENST00000312783.6:c.1186A>G	p.Lys396Glu	p.K396E	ENST00000312783	NM_198436.1	396	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7579425	7579426	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	382	432	0	ENST00000269305.4:c.261dup	p.Ala88SerfsTer61	p.A88Sfs*61	ENST00000269305	NM_001126112.2	87	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	226	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134884858	134884858	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	75	521	0	ENST00000398015.3:c.1634C>G	p.Ser545Trp	p.S545W	ENST00000398015	NM_004441.4	545	tCg/tGg																																																																														
ATR	0	MSKCC	GRCh37	3	142232344	142232344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0006855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	88	382	1	ENST00000350721.4:c.4640A>T	p.Glu1547Val	p.E1547V	ENST00000350721	NM_001184.3	1547	gAg/gTg																																																																														
STK11	0	MSKCC	GRCh37	19	1220707	1220707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	155	421	1	ENST00000326873.7:c.725G>T	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGg/gTg																																																																														
MAX	0	MSKCC	GRCh37	14	65560503	65560503	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	212	525	1	ENST00000358664.4:c.94del	p.Glu32AsnfsTer33	p.E32Nfs*33	ENST00000358664	NM_002382.4	32	Gaa/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7577584	7577585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTAC			P-0006869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	194	366	0	ENST00000269305.4:c.696_697insGTAG	p.His233ValfsTer8	p.H233Vfs*8	ENST00000269305	NM_001126112.2	232	-/GTAG																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106464	27106465	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0006869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	198	354	0	ENST00000324856.7:c.6075_6076delGCinsTT	p.LysGln2025AsnTer	p.KQ2025N*	ENST00000324856	NM_006015.4	2025	aaGCag/aaTTag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	158	218	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	289	374	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0006872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	258	294	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	151	196	1	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912173	114912173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1379	469	590	1	ENST00000543371.1:c.1243C>T	p.Pro415Ser	p.P415S	ENST00000543371	NM_001198531.1	415	Ccc/Tcc																																																																														
FLT1	0	MSKCC	GRCh37	13	28891674	28891674	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1763	115	479	0	ENST00000282397.4:c.3347G>C	p.Gly1116Ala	p.G1116A	ENST00000282397	NM_002019.4	1116	gGc/gCc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	338	339	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	233	380	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	378	656	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112174868	112174868	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	118	430	1	ENST00000257430.4:c.3577C>T	p.Gln1193Ter	p.Q1193*	ENST00000257430	NM_000038.5	1193	Cag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	340	562	0	ENST00000344626.4:c.3484G>A	p.Gly1162Ser	p.G1162S	ENST00000344626	NM_003072.3	1162	Ggc/Agc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66270144	66270144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	189	513	0	ENST00000273854.3:c.1738A>G	p.Thr580Ala	p.T580A	ENST00000273854	NM_004439.5	580	Aca/Gca																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576093	88576093	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	460	507	0	ENST00000360948.2:c.1580A>G	p.Asp527Gly	p.D527G	ENST00000360948	NM_001012338.2	527	gAc/gGc																																																																														
SUZ12	0	MSKCC	GRCh37	17	30264341	30264341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	32	133	0	ENST00000322652.5:c.76G>A	p.Gly26Arg	p.G26R	ENST00000322652	NM_015355.2	26	Ggg/Agg																																																																														
SRC	0	MSKCC	GRCh37	20	36012656	36012656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	149	163	0	ENST00000358208.4:c.100G>A	p.Ala34Thr	p.A34T	ENST00000358208		34	Gcc/Acc																																																																														
XIAP	0	MSKCC	GRCh37	X	123040919	123040919	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	66	274	0	ENST00000355640.3:c.1382T>C	p.Val461Ala	p.V461A	ENST00000355640		461	gTt/gCt																																																																														
APC	0	MSKCC	GRCh37	5	112176027	112176028	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	75	388	0	ENST00000257430.4:c.4738_4739dup	p.Ser1581PhefsTer70	p.S1581Ffs*70	ENST00000257430	NM_000038.5	1579	att/atTAt																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778072	27778089	+	inframe_deletion	In_Frame_Del	DEL	AGATCGCGCAGGACTTCA	AGATCGCGCAGGACTTCA	-			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	517	1132	0	ENST00000369163.2:c.224_241del	p.Ile75_Lys80del	p.I75_K80del	ENST00000369163	NM_003536.2	74	gAGATCGCGCAGGACTTCAag/gag																																																																														
NTRK3	0	MSKCC	GRCh37	15	88670432	88670434	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	503	525	1	ENST00000360948.2:c.1252_1254del	p.Pro418del	p.P418del	ENST00000360948	NM_001012338.2	418	CCT/-																																																																														
EGFL7	0	MSKCC	GRCh37	9	139566541	139566715	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGTGCCCCCACCCTCCAGAGCCCTCCTCCCGGGTCTGGGCCCAGTGGGCCTAGAGGGGCTACCCAGGCTTGGGGGTCGGGGGCGACCAAAGGCCAAGGGGCCAGTCAGATCTAGCTGGGCGGGGAGGCTGTGGGGAGCAGTGATCTCTGACCTTCGCCTCATCCAACCCTAG	GTGAGTGCCCCCACCCTCCAGAGCCCTCCTCCCGGGTCTGGGCCCAGTGGGCCTAGAGGGGCTACCCAGGCTTGGGGGTCGGGGGCGACCAAAGGCCAAGGGGCCAGTCAGATCTAGCTGGGCGGGGAGGCTGTGGGGAGCAGTGATCTCTGACCTTCGCCTCATCCAACCCTAG	-			P-0006888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	91	423	0	ENST00000308874.7:c.799+2_800del		p.X267_splice	ENST00000308874		267																																																																															
MAP2K1	0	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	70	354	0	ENST00000307102.5:c.171G>C	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaC																																																																														
SOX9	0	MSKCC	GRCh37	17	70120417	70120422	+	inframe_deletion	In_Frame_Del	DEL	GCGCCC	GCGCCC	-			P-0006903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	136	374	0	ENST00000245479.2:c.1419_1424del	p.Gln473_Pro475delinsHis	p.Q473_P475delinsH	ENST00000245479	NM_000346.3	473	caGCGCCCc/cac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094454	27094455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	69	288	0	ENST00000324856.7:c.3163dup	p.Tyr1055LeufsTer50	p.Y1055Lfs*50	ENST00000324856	NM_006015.4	1054	-/T																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0006913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	185	381	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	47	465	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0006936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	78	616	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
STAG2	0	MSKCC	GRCh37	X	123205060	123205060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	86	347	0	ENST00000218089.9:c.2420G>A	p.Arg807His	p.R807H	ENST00000218089	NM_001042749.1	807	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	145	271	0				ENST00000310581	NM_198253.2																																																																																
FOXA1	0	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	62	268	0	ENST00000250448.2:c.781C>T	p.Arg261Cys	p.R261C	ENST00000250448	NM_004496.3	261	Cgc/Tgc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	516	482	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969323	44969323	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	274	441	0	ENST00000377967.4:c.4006-1G>A		p.X1336_splice	ENST00000377967	NM_021140.2	1336																																																																															
INPP4A	0	MSKCC	GRCh37	2	99162430	99162430	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0006989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	252	339	0	ENST00000074304.5:c.950-2A>G		p.X317_splice	ENST00000074304	NM_001134224.1	317																																																																															
NCOR1	0	MSKCC	GRCh37	17	15964793	15964793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	485	607	0	ENST00000268712.3:c.5803G>T	p.Val1935Leu	p.V1935L	ENST00000268712	NM_006311.3	1935	Gtg/Ttg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45872229	45872229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	361	437	0	ENST00000391945.4:c.205A>G	p.Lys69Glu	p.K69E	ENST00000391945	NM_000400.3	69	Aaa/Gaa																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52719113	52719113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	44	402	1	ENST00000322088.6:c.889G>A	p.Glu297Lys	p.E297K	ENST00000322088	NM_014225.5	297	Gag/Aag																																																																														
MLL2	0	MSKCC	GRCh37	12	49440531	49440546	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCCACACAACGCCA	ACTCCACACAACGCCA	-			P-0006989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	285	431	0	ENST00000301067.7:c.4264_4279del	p.Trp1422ValfsTer79	p.W1422Vfs*79	ENST00000301067	NM_003482.3	1422	TGGCGTTGTGTGGAGTgt/gt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023219	27023232	+	frameshift_variant	Frame_Shift_Del	DEL	CCTAGGCCCGCCCT	CCTAGGCCCGCCCT	-			P-0006989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	139	145	0	ENST00000324856.7:c.325_338del	p.Pro109GlufsTer3	p.P109Efs*3	ENST00000324856	NM_006015.4	109	CCTAGGCCCGCCCTg/g																																																																														
EP300	0	MSKCC	GRCh37	22	41554488	41554489	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0006989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	256	419	0	ENST00000263253.7:c.3575dup	p.Tyr1192Ter	p.Y1192*	ENST00000263253	NM_001429.3	1192	tac/tAac																																																																														
MLL2	0	MSKCC	GRCh37	12	49440525	49440526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	307	447	0	ENST00000301067.7:c.4284dup	p.Val1429CysfsTer3	p.V1429Cfs*3	ENST00000301067	NM_003482.3	1428	-/T																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	70	358	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0007000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	239	297	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	10	362	1	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	186	379	0	ENST00000335508.6:c.2704G>C	p.Glu902Gln	p.E902Q	ENST00000335508	NM_012433.2	902	Gaa/Caa																																																																														
TP63	0	MSKCC	GRCh37	3	189526179	189526179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	382	453	0	ENST00000264731.3:c.443C>A	p.Pro148His	p.P148H	ENST00000264731	NM_003722.4	148	cCc/cAc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468297	50468297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	98	245	1	ENST00000331340.3:c.1532G>A	p.Arg511Gln	p.R511Q	ENST00000331340	NM_006060.4	511	cGa/cAa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737627	145737627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	217	464	1	ENST00000428558.2:c.3136G>A	p.Glu1046Lys	p.E1046K	ENST00000428558	NM_004260.3	1046	Gag/Aag																																																																														
TSC1	0	MSKCC	GRCh37	9	135801080	135801080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	48	416	0	ENST00000298552.3:c.257G>T	p.Arg86Leu	p.R86L	ENST00000298552	NM_001162426.1	86	cGt/cTt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817882	3817882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	31	397	0	ENST00000262367.5:c.3089C>T	p.Ser1030Phe	p.S1030F	ENST00000262367	NM_004380.2	1030	tCc/tTc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969322	44969322	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0007000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	200	468	0	ENST00000377967.4:c.4006-2A>C		p.X1336_splice	ENST00000377967	NM_021140.2	1336																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0007003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	27	413	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TERT	0	MSKCC	GRCh37	5	1280418	1280418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	12	314	0	ENST00000310581.5:c.1805C>T	p.Ser602Leu	p.S602L	ENST00000310581	NM_198253.2	602	tCg/tTg																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20159748	20159748	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	42	495	0	ENST00000379607.5:c.11A>G	p.Asn4Ser	p.N4S	ENST00000379607	NM_001412.3	4	aAt/aGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	429	621	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																														
FGFR4	0	MSKCC	GRCh37	5	176519660	176519660	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	476	396	0	ENST00000292408.4:c.932A>G	p.Asn311Ser	p.N311S	ENST00000292408	NM_213647.1	311	aAt/aGt																																																																														
ATRX	0	MSKCC	GRCh37	X	76829789	76829789	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	319	701	1	ENST00000373344.5:c.6252C>A	p.Tyr2084Ter	p.Y2084*	ENST00000373344	NM_000489.3	2084	taC/taA																																																																														
NEGR1	0	MSKCC	GRCh37	1	72058534	72058535	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	1201	805	1	ENST00000357731.5:c.905dup	p.Leu303AlafsTer11	p.L303Afs*11	ENST00000357731	NM_173808.2	302	aag/aaAg																																																																														
RB1	0	MSKCC	GRCh37	13	48937086	48937094	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TAGATGAGG	TAGATGAGG	-			P-0007020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	423	308	0	ENST00000267163.4:c.856_861+3del		p.X286_splice	ENST00000267163	NM_000321.2	286																																																																															
CREBBP	0	MSKCC	GRCh37	16	3807887	3807887	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	803	504	1	ENST00000262367.5:c.3532del	p.Cys1178AlafsTer72	p.C1178Afs*72	ENST00000262367	NM_004380.2	1178	Tgc/gc																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67201707	67201714	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGCCT	TCTGGCCT	-			P-0007020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	382	611	0	ENST00000312629.5:c.1008_1015del	p.Leu337AlafsTer20	p.L337Afs*20	ENST00000312629	NM_003952.2	336	ctTCTGGCCTgg/ctgg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0007053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	28	192	1	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	342	329	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399975	139399975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	489	437	0	ENST00000277541.6:c.4373C>T	p.Ala1458Val	p.A1458V	ENST00000277541	NM_017617.3	1458	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579432	7579433	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	391	379	0	ENST00000269305.4:c.254dup	p.Ala86CysfsTer63	p.A86Cfs*63	ENST00000269305	NM_001126112.2	85	cct/ccCt																																																																														
RNF43	0	MSKCC	GRCh37	17	56492900	56492930	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGAGGGCAGCCAGCTGCAGCTGGTGGCCA	CCAGAGGGCAGCCAGCTGCAGCTGGTGGCCA	-			P-0007063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	197	162	0	ENST00000407977.2:c.9_39del	p.Gly4ProfsTer4	p.G4Pfs*4	ENST00000407977		3	ggTGGCCACCAGCTGCAGCTGGCTGCCCTCTGG/gg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096297	178096298	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGGAGT			P-0007063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	475	436	0	ENST00000397062.3:c.1028_1033dup	p.Asp343_Ser344dup	p.D343_S344dup	ENST00000397062	NM_006164.4	343	ggc/gACTCCGgc																																																																														
XPO1	0	MSKCC	GRCh37	2	61721063	61721063	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			368	121	401	0	ENST00000401558.2:c.1211C>G	p.Pro404Arg	p.P404R	ENST00000401558	NM_003400.3	404	cCc/cGc																																																																														
IRF4	0	MSKCC	GRCh37	6	401636	401636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			244	322	328	1	ENST00000380956.4:c.958G>T	p.Ala320Ser	p.A320S	ENST00000380956	NM_001195286.1	320	Gcc/Tcc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32190398	32190398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			281	336	393	1	ENST00000375023.3:c.341G>T	p.Cys114Phe	p.C114F	ENST00000375023	NM_004557.3	114	tGc/tTc																																																																														
LATS1	0	MSKCC	GRCh37	6	150005551	150005551	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			230	155	403	0	ENST00000253339.5:c.674A>T	p.Gln225Leu	p.Q225L	ENST00000253339		225	cAa/cTa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508623	106508623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			293	54	245	0	ENST00000359195.3:c.617C>A	p.Pro206His	p.P206H	ENST00000359195	NM_002649.2	206	cCc/cAc																																																																														
MLL3	0	MSKCC	GRCh37	7	151877898	151877898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			350	74	259	0	ENST00000262189.6:c.7047C>G	p.Phe2349Leu	p.F2349L	ENST00000262189	NM_170606.2	2349	ttC/ttG																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341196	8341196	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs138775068		P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			337	144	420	0	ENST00000356435.5:c.5020C>A	p.Arg1674Ser	p.R1674S	ENST00000356435		1674	Cgc/Agc																																																																														
MLL	0	MSKCC	GRCh37	11	118376769	118376769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			171	176	295	1	ENST00000534358.1:c.10162G>T	p.Ala3388Ser	p.A3388S	ENST00000534358	NM_005933.3	3388	Gct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			380	343	385	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			198	175	384	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																														
STK11	0	MSKCC	GRCh37	19	1207144	1207144	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			284	236	482	0	ENST00000326873.7:c.232A>T	p.Lys78Ter	p.K78*	ENST00000326873	NM_000455.4	78	Aag/Tag																																																																														
TCF3	0	MSKCC	GRCh37	19	1621854	1621854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007101-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			121	98	444	0	ENST00000344749.5:c.938G>T	p.Gly313Val	p.G313V	ENST00000344749	NM_001136139.2	313	gGg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	283	537	2	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41267290	41267290	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	286	410	0	ENST00000349496.5:c.874A>G	p.Lys292Glu	p.K292E	ENST00000349496	NM_001904.3	292	Aaa/Gaa																																																																														
FGFR1	0	MSKCC	GRCh37	8	38287349	38287349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	96	436	1	ENST00000425967.3:c.308G>T	p.Gly103Val	p.G103V	ENST00000425967	NM_001174067.1	103	gGg/gTg																																																																														
ABL1	0	MSKCC	GRCh37	9	133760438	133760438	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	219	393	0	ENST00000318560.5:c.2761G>T	p.Glu921Ter	p.E921*	ENST00000318560	NM_005157.4	921	Gag/Tag																																																																														
H3F3C	0	MSKCC	GRCh37	12	31945028	31945028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	295	510	0	ENST00000340398.3:c.73G>T	p.Ala25Ser	p.A25S	ENST00000340398	NM_001013699.2	25	Gct/Tct																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779578	3779578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	300	587	0	ENST00000262367.5:c.5470G>A	p.Ala1824Thr	p.A1824T	ENST00000262367	NM_004380.2	1824	Gcc/Acc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11958295	11958295	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	116	172	0	ENST00000353533.5:c.205C>T	p.Gln69Ter	p.Q69*	ENST00000353533	NM_003010.3	69	Caa/Taa																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	146	382	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	140	360	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187539765	187539765	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	97	475	0	ENST00000441802.2:c.7975G>T	p.Glu2659Ter	p.E2659*	ENST00000441802	NM_005245.3	2659	Gag/Tag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911973	32911973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	304	794	0	ENST00000380152.3:c.3481G>T	p.Asp1161Tyr	p.D1161Y	ENST00000380152		1161	Gat/Tat																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134379	41134379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1288	299	763	0	ENST00000379561.5:c.1249C>T	p.Pro417Ser	p.P417S	ENST00000379561	NM_002015.3	417	Ccc/Tcc																																																																														
PALB2	0	MSKCC	GRCh37	16	23637606	23637606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	90	520	1	ENST00000261584.4:c.2699C>T	p.Ala900Val	p.A900V	ENST00000261584	NM_024675.3	900	gCt/gTt																																																																														
STK11	0	MSKCC	GRCh37	19	1220434	1220434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	199	511	0	ENST00000326873.7:c.527A>G	p.Asp176Gly	p.D176G	ENST00000326873	NM_000455.4	176	gAc/gGc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600323	10600323	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	172	398	0	ENST00000171111.5:c.1531+1G>T		p.X511_splice	ENST00000171111	NM_203500.1	511																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11144182	11144182	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	129	335	0	ENST00000344626.4:c.3763G>T	p.Glu1255Ter	p.E1255*	ENST00000344626	NM_003072.3	1255	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	151	511	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553747	106553747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	45	481	0	ENST00000369096.4:c.1712G>A	p.Gly571Asp	p.G571D	ENST00000369096	NM_001198.3	571	gGc/gAc																																																																														
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	19	392	1	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
TET1	0	MSKCC	GRCh37	10	70432756	70432756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	38	547	0	ENST00000373644.4:c.4778G>C	p.Ser1593Thr	p.S1593T	ENST00000373644	NM_030625.2	1593	aGc/aCc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	156	301	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	378	332	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																														
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	340	435	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	368	316	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32166200	32166200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	96	397	1	ENST00000375023.3:c.4754C>A	p.Pro1585His	p.P1585H	ENST00000375023	NM_004557.3	1585	cCt/cAt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157454306	157454306	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141030037		P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	90	292	0	ENST00000346085.5:c.2516C>T	p.Thr839Ile	p.T839I	ENST00000346085	NM_020732.3	839	aCt/aTt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435656	18435656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	57	260	0	ENST00000266497.5:c.641C>T	p.Pro214Leu	p.P214L	ENST00000266497		214	cCc/cTc																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66519865	66519865	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	53	261	0	ENST00000358598.2:c.349-1G>T		p.X117_splice	ENST00000358598	NM_212471.2	117																																																																															
SMAD4	0	MSKCC	GRCh37	18	48591808	48591808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	182	318	0	ENST00000342988.3:c.971G>T	p.Cys324Phe	p.C324F	ENST00000342988	NM_005359.5	324	tGt/tTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	78	372	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																														
SETD2	0	MSKCC	GRCh37	3	47161913	47161913	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007141-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			231	61	414	0	ENST00000409792.3:c.4213A>T	p.Lys1405Ter	p.K1405*	ENST00000409792	NM_014159.6	1405	Aaa/Taa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52661288	52661288	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007141-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			269	58	570	0	ENST00000394830.3:c.1541+1G>T		p.X514_splice	ENST00000394830	NM_018313.4	514																																																																															
TP53	0	MSKCC	GRCh37	17	7572929	7572929	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0007141-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			603	163	605	1	ENST00000269305.4:c.1180T>A	p.Ter394ArgextTer9	p.*394Rext*9	ENST00000269305	NM_001126112.2	394	Tga/Aga																																																																														
KDR	0	MSKCC	GRCh37	4	55981509	55981509	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007141-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			205	49	511	0	ENST00000263923.4:c.428del	p.Asn143ThrfsTer5	p.N143Tfs*5	ENST00000263923	NM_002253.2	143	aAc/ac																																																																														
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	216	332	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	296	514	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367257	50367257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	129	317	1	ENST00000331340.3:c.64G>A	p.Asp22Asn	p.D22N	ENST00000331340	NM_006060.4	22	Gat/Aat																																																																														
PBRM1	0	MSKCC	GRCh37	3	52597394	52597394	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	233	566	0	ENST00000394830.3:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000394830	NM_018313.4	1306	Gaa/Taa																																																																														
ATR	0	MSKCC	GRCh37	3	142168429	142168429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	100	309	0	ENST00000350721.4:c.7777C>A	p.Leu2593Ile	p.L2593I	ENST00000350721	NM_001184.3	2593	Ctt/Att																																																																														
APC	0	MSKCC	GRCh37	5	112174602	112174602	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	298	574	0	ENST00000257430.4:c.3311C>A	p.Ser1104Ter	p.S1104*	ENST00000257430	NM_000038.5	1104	tCa/tAa																																																																														
APC	0	MSKCC	GRCh37	5	112175642	112175642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	350	576	0	ENST00000257430.4:c.4351G>T	p.Glu1451Ter	p.E1451*	ENST00000257430	NM_000038.5	1451	Gaa/Taa																																																																														
RAD21	0	MSKCC	GRCh37	8	117866644	117866644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1767	383	757	1	ENST00000297338.2:c.1001G>T	p.Ser334Ile	p.S334I	ENST00000297338	NM_006265.2	334	aGc/aTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89653829	89653829	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	131	379	0	ENST00000371953.3:c.127G>T	p.Glu43Ter	p.E43*	ENST00000371953	NM_000314.4	43	Gaa/Taa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	346	598	1	ENST00000543371.1:c.1411C>A	p.Arg471Ser	p.R471S	ENST00000543371	NM_001198531.1	471	Cgc/Agc																																																																														
KDM5A	0	MSKCC	GRCh37	12	404891	404891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	197	456	1	ENST00000399788.2:c.4303C>A	p.Leu1435Met	p.L1435M	ENST00000399788	NM_001042603.1	1435	Ctg/Atg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81941323	81941323	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	233	585	1	ENST00000359376.3:c.1501G>T	p.Ala501Ser	p.A501S	ENST00000359376	NM_002661.3	501	Gcc/Tcc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032531	12032531	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	38	264	0	ENST00000353533.5:c.967G>T	p.Gly323Ter	p.G323*	ENST00000353533	NM_003010.3	323	Gga/Tga																																																																														
ERBB2	0	MSKCC	GRCh37	17	37882034	37882034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	171	454	3	ENST00000269571.5:c.2800C>A	p.Leu934Met	p.L934M	ENST00000269571		934	Ctg/Atg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368287	45368287	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	55	514	0	ENST00000262160.6:c.1315G>T	p.Glu439Ter	p.E439*	ENST00000262160	NM_005901.5	439	Gaa/Taa																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18271359	18271359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	217	357	1	ENST00000222254.8:c.401C>T	p.Ala134Val	p.A134V	ENST00000222254	NM_005027.3	134	gCc/gTc																																																																														
AXL	0	MSKCC	GRCh37	19	41763458	41763458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	345	666	0	ENST00000301178.4:c.2257G>A	p.Val753Met	p.V753M	ENST00000301178	NM_021913.4	753	Gtg/Atg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412596	63412596	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	223	214	0	ENST00000330258.3:c.571G>T	p.Glu191Ter	p.E191*	ENST00000330258	NM_152424.3	191	Gag/Tag																																																																														
KDM5C	0	MSKCC	GRCh37	X	53250082	53250085	+	frameshift_variant	Frame_Shift_Del	DEL	AAGG	AAGG	-			P-0007144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	326	290	2	ENST00000375401.3:c.164_167del	p.Pro55LeufsTer17	p.P55Lfs*17	ENST00000375401	NM_004187.3	55	cCCTTt/ct																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	263	576	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	382	525	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	121	260	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	120	510	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
MDM4	0	MSKCC	GRCh37	1	204507421	204507421	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	132	539	0	ENST00000367182.3:c.496A>T	p.Ile166Leu	p.I166L	ENST00000367182	NM_001278516.1	166	Ata/Tta																																																																														
BCL6	0	MSKCC	GRCh37	3	187447260	187447260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	277	416	0	ENST00000232014.4:c.933G>C	p.Glu311Asp	p.E311D	ENST00000232014	NM_001130845.1	311	gaG/gaC																																																																														
NSD1	0	MSKCC	GRCh37	5	176666819	176666819	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	108	511	0	ENST00000439151.2:c.4255G>C	p.Asp1419His	p.D1419H	ENST00000439151	NM_022455.4	1419	Gac/Cac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341876	8341876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	111	569	0	ENST00000356435.5:c.4764G>A	p.Met1588Ile	p.M1588I	ENST00000356435		1588	atG/atA																																																																														
MDM2	0	MSKCC	GRCh37	12	69233093	69233093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	132	431	0	ENST00000462284.1:c.958C>G	p.Pro320Ala	p.P320A	ENST00000462284	NM_002392.5	320	Ccc/Gcc																																																																														
FLT3	0	MSKCC	GRCh37	13	28597507	28597507	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	153	513	0	ENST00000241453.7:c.2398G>C	p.Glu800Gln	p.E800Q	ENST00000241453	NM_004119.2	800	Gaa/Caa																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	105	382	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
H3F3A	0	MSKCC	GRCh37	1	226252170	226252170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	14	50	0	ENST00000366813.1:c.118C>A	p.His40Asn	p.H40N	ENST00000366813		40	Cat/Aat																																																																														
AXL	0	MSKCC	GRCh37	19	41743949	41743949	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199988157		P-0007177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	129	395	0	ENST00000301178.4:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000301178	NM_021913.4	295	cGg/cAg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265722	41266253	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	TTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	-			P-0007177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	55	40	0	ENST00000349496.5:c.13+152_241+11del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
PPP6C	0	MSKCC	GRCh37	9	127916226	127916226	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	164	447	0	ENST00000373547.4:c.418del	p.Arg140AspfsTer12	p.R140Dfs*12	ENST00000373547	NM_002721.4	140	Aga/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1386	186	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SYK	0	MSKCC	GRCh37	9	93637070	93637070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1837	209	483	0	ENST00000375746.1:c.1120G>A	p.Asp374Asn	p.D374N	ENST00000375746	NM_001174167.1	374	Gac/Aac																																																																														
RBM10	0	MSKCC	GRCh37	X	47034471	47034471	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1646	256	615	0	ENST00000329236.7:c.325C>T	p.Arg109Ter	p.R109*	ENST00000329236	NM_001204466.1	109	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	88	271	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	107	328	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984824	11984824	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	69	252	0	ENST00000353533.5:c.370A>G	p.Ser124Gly	p.S124G	ENST00000353533	NM_003010.3	124	Agt/Ggt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240753	53240753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	59	233	1	ENST00000375401.3:c.1327G>A	p.Asp443Asn	p.D443N	ENST00000375401	NM_004187.3	443	Gac/Aac																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	27	174	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	27	174	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	27	174	0	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7574002	7574002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007219-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	1109	713	0	ENST00000269305.4:c.1025G>C	p.Arg342Pro	p.R342P	ENST00000269305	NM_001126112.2	342	cGa/cCa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	646	558	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
RB1	0	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	132	415	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga																																																																														
ARID5B	0	MSKCC	GRCh37	10	63845651	63845651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	224	191	0	ENST00000279873.7:c.1390G>A	p.Ala464Thr	p.A464T	ENST00000279873	NM_032199.2	464	Gca/Aca																																																																														
NCOR1	0	MSKCC	GRCh37	17	15973795	15973795	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	445	425	0	ENST00000268712.3:c.4197C>G	p.Ile1399Met	p.I1399M	ENST00000268712	NM_006311.3	1399	atC/atG																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276612	15276612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	166	511	0	ENST00000263388.2:c.5653C>A	p.Gln1885Lys	p.Q1885K	ENST00000263388	NM_000435.2	1885	Cag/Aag																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	353	295	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	238	323	1	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161254	56161254	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	216	329	0	ENST00000399503.3:c.1123T>G	p.Leu375Val	p.L375V	ENST00000399503	NM_005921.1	375	Tta/Gta																																																																														
ATR	0	MSKCC	GRCh37	3	142253986	142254009	+	inframe_deletion	In_Frame_Del	DEL	TGTTGAATGGCCTTCATAGAGAGC	TGTTGAATGGCCTTCATAGAGAGC	-			P-0007231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	212	415	0	ENST00000350721.4:c.3858_3881del	p.Gln1286_Gln1293del	p.Q1286_Q1293del	ENST00000350721	NM_001184.3	1286	caGCTCTCTATGAAGGCCATTCAACAt/cat																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178385	56178397	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAGATTAGATG	TGCAGATTAGATG	-			P-0007231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	223	467	0	ENST00000399503.3:c.3359_3371del	p.Cys1120SerfsTer24	p.C1120Sfs*24	ENST00000399503	NM_005921.1	1120	TGCAGATTAGATGtc/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	80	310	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MED12	0	MSKCC	GRCh37	X	70338696	70338698	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0007241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	75	209	0	ENST00000374080.3:c.94_96del	p.Lys32del	p.K32del	ENST00000374080		31	cAGAag/cag																																																																														
MLL3	0	MSKCC	GRCh37	7	151853105	151853105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	43	218	0	ENST00000262189.6:c.11850del	p.Phe3951SerfsTer36	p.F3951Sfs*36	ENST00000262189	NM_170606.2	3950	ccC/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0007271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	96	400	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	0	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	191	436	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat																																																																														
MTOR	0	MSKCC	GRCh37	1	11190588	11190588	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	62	312	0	ENST00000361445.4:c.5611G>A	p.Glu1871Lys	p.E1871K	ENST00000361445	NM_004958.3	1871	Gag/Aag																																																																														
CSF3R	0	MSKCC	GRCh37	1	36940993	36940993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	93	542	0	ENST00000361632.4:c.346G>C	p.Glu116Gln	p.E116Q	ENST00000361632		116	Gag/Cag																																																																														
MSH2	0	MSKCC	GRCh37	2	47702296	47702296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	182	519	0	ENST00000233146.2:c.1892G>A	p.Arg631Lys	p.R631K	ENST00000233146	NM_000251.2	631	aGa/aAa																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197369	26197369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1452	108	771	1	ENST00000356476.2:c.110A>G	p.Lys37Arg	p.K37R	ENST00000356476		37	aAg/aGg																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11924263	11924278	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGGCCCCGTAGGG	CCCCGGCCCCGTAGGG	-			P-0007271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	23	41	0	ENST00000353533.5:c.60_75del	p.Gly22ArgfsTer18	p.G22Rfs*18	ENST00000353533	NM_003010.3	20	acCCCCGGCCCCGTAGGG/ac																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521711	89521711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	109	557	0	ENST00000336596.2:c.2788G>A	p.Glu930Lys	p.E930K	ENST00000336596	NM_005233.5	930	Gaa/Aaa																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0007281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	124	360	0	ENST00000288602.6:c.1798_1799delGTinsAG	p.Val600Arg	p.V600R	ENST00000288602	NM_004333.4	600	GTg/AGg																																																																														
PARP1	0	MSKCC	GRCh37	1	226561967	226561967	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	211	523	0	ENST00000366794.5:c.2030T>A	p.Phe677Tyr	p.F677Y	ENST00000366794	NM_001618.3	677	tTt/tAt																																																																														
EIF4E	0	MSKCC	GRCh37	4	99809045	99809045	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	55	361	0	ENST00000280892.6:c.340T>A	p.Phe114Ile	p.F114I	ENST00000280892	NM_001130678.1	114	Ttt/Att																																																																														
PPP6C	0	MSKCC	GRCh37	9	127933378	127933378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	113	656	0	ENST00000373547.4:c.157G>A	p.Asp53Asn	p.D53N	ENST00000373547	NM_002721.4	53	Gat/Aat																																																																														
PGR	0	MSKCC	GRCh37	11	100933480	100933480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	54	372	0	ENST00000325455.5:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000325455	NM_001202474.3	637	cGa/cAa																																																																														
DICER1	0	MSKCC	GRCh37	14	95590605	95590605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	103	573	0	ENST00000343455.3:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000343455	NM_177438.2	435	cCt/cTt																																																																														
AXIN1	0	MSKCC	GRCh37	16	347851	347851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1182	142	723	0	ENST00000262320.3:c.1655C>T	p.Ala552Val	p.A552V	ENST00000262320	NM_003502.3	552	gCc/gTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862725	9862725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	105	524	0	ENST00000330684.3:c.2578C>T	p.Leu860Phe	p.L860F	ENST00000330684	NM_001134407.1	860	Ctc/Ttc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346894	89346894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	129	403	0	ENST00000301030.4:c.6056C>T	p.Pro2019Leu	p.P2019L	ENST00000301030	NM_001256183.1	2019	cCc/cTc																																																																														
GATA1	0	MSKCC	GRCh37	X	48652303	48652303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	220	439	0	ENST00000376670.3:c.974G>A	p.Gly325Glu	p.G325E	ENST00000376670	NM_002049.3	325	gGa/gAa																																																																														
TP53	0	MSKCC	GRCh37	17	7576926	7576942	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTAGGAAAGAGGCAAG	GCTAGGAAAGAGGCAAG	-			P-0007281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	98	432	0	ENST00000269305.4:c.920-16_920del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
MLL	0	MSKCC	GRCh37	11	118375894	118375895	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0007284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	177	410	0	ENST00000534358.1:c.9289_9290del	p.Leu3097SerfsTer15	p.L3097Sfs*15	ENST00000534358	NM_005933.3	3096	aCT/a																																																																														
GPS2	0	MSKCC	GRCh37	17	7217431	7217432	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0007284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	436	729	0	ENST00000380728.2:c.364_365del	p.Val122SerfsTer26	p.V122Sfs*26	ENST00000380728		122	GTt/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	43	344	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0007302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	33	318	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
PBRM1	0	MSKCC	GRCh37	3	52595908	52595908	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	39	509	0	ENST00000394830.3:c.4007del	p.Leu1336ArgfsTer6	p.L1336Rfs*6	ENST00000394830	NM_018313.4	1336	cTg/cg																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	223	512	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44937684	44937684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	163	531	0	ENST00000377967.4:c.2872C>T	p.Gln958Ter	p.Q958*	ENST00000377967	NM_021140.2	958	Caa/Taa																																																																														
NEGR1	0	MSKCC	GRCh37	1	72163735	72163735	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	191	913	0	ENST00000357731.5:c.623A>T	p.Asp208Val	p.D208V	ENST00000357731	NM_173808.2	208	gAt/gTt																																																																														
KIT	0	MSKCC	GRCh37	4	55564729	55564729	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0007312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	143	374	0	ENST00000288135.5:c.617C>A	p.Pro206Gln	p.P206Q	ENST00000288135	NM_000222.2	206	cCa/cAa																																																																														
FLT1	0	MSKCC	GRCh37	13	29001930	29001930	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	22	541	0	ENST00000282397.4:c.1235C>G	p.Ser412Ter	p.S412*	ENST00000282397	NM_002019.4	412	tCa/tGa																																																																														
STAG2	0	MSKCC	GRCh37	X	123185200	123185200	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	216	636	0	ENST00000218089.9:c.1152T>A	p.Tyr384Ter	p.Y384*	ENST00000218089	NM_001042749.1	384	taT/taA																																																																														
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	61	291	0	ENST00000269305.4:c.770T>G	p.Leu257Arg	p.L257R	ENST00000269305	NM_001126112.2	257	cTg/cGg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023676	27023676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	38	338	0	ENST00000324856.7:c.782C>A	p.Ser261Ter	p.S261*	ENST00000324856	NM_006015.4	261	tCg/tAg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153253868	153253868	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	33	209	1	ENST00000281708.4:c.865G>C	p.Ala289Pro	p.A289P	ENST00000281708	NM_033632.3	289	Gca/Cca																																																																														
CDH1	0	MSKCC	GRCh37	16	68771333	68771333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	76	217	0	ENST00000261769.5:c.15C>A	p.Ser5Arg	p.S5R	ENST00000261769	NM_004360.3	5	agC/agA																																																																														
TP53	0	MSKCC	GRCh37	17	7579370	7579370	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	116	390	0	ENST00000269305.4:c.317del	p.Ser106ThrfsTer17	p.S106Tfs*17	ENST00000269305	NM_001126112.2	106	aGc/ac																																																																														
MEN1	0	MSKCC	GRCh37	11	64573828	64573955	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGAGGCAATGCCCTGGATGGAGGTGAGGCAGAGGATCCTCAGGGAGGCAGCCCCAGCTGCCCTGCTGGCACAAATGCCCCACCAGGGCACACCCAGAAGGGGCCACAGGAAGATCCCAGGGAGTCCT	CTGAGGCAATGCCCTGGATGGAGGTGAGGCAGAGGATCCTCAGGGAGGCAGCCCCAGCTGCCCTGCTGGCACAAATGCCCCACCAGGGCACACCCAGAAGGGGCCACAGGAAGATCCCAGGGAGTCCT	-			P-0007355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	230	265	0	ENST00000337652.1:c.928-115_940del		p.X310_splice	ENST00000337652	NM_130803.2	310																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	77	217	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	400	574	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	10	80	0	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	309	619	1	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga																																																																														
TBX3	0	MSKCC	GRCh37	12	115120671	115120671	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	261	541	0	ENST00000257566.3:c.335T>G	p.Leu112Arg	p.L112R	ENST00000257566	NM_016569.3	112	cTt/cGt																																																																														
TBX3	0	MSKCC	GRCh37	12	115114263	115114264	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGAGCT			P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	175	301	0	ENST00000257566.3:c.947_953dup	p.Leu319AlafsTer10	p.L319Afs*10	ENST00000257566	NM_016569.3	318	acc/acAGCTCACc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177662	56177662	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	399	369	0	ENST00000399503.3:c.2636del	p.Gly879ValfsTer30	p.G879Vfs*30	ENST00000399503	NM_005921.1	879	Ggt/gt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115965	8115968	+	frameshift_variant	Frame_Shift_Del	DEL	CATG	CATG	ATT			P-0007362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	53	144	0	ENST00000346208.3:c.1311_1314delinsATT	p.Ser437ArgfsTer38	p.S437Rfs*38	ENST00000346208		437	agCATG/agATT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	55	261	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	112	282	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	55	242	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	62	211	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449779	149449779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	38	222	1	ENST00000286301.3:c.1285G>A	p.Val429Met	p.V429M	ENST00000286301	NM_005211.3	429	Gtg/Atg																																																																														
IDH1	0	MSKCC	GRCh37	2	209104649	209104649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	421	460	1	ENST00000345146.2:c.929G>T	p.Gly310Val	p.G310V	ENST00000345146	NM_005896.2	310	gGg/gTg																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665024	138665024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			22	62	20	0	ENST00000330315.3:c.541G>T	p.Ala181Ser	p.A181S	ENST00000330315	NM_023067.3	181	Gcc/Tcc																																																																														
KIT	0	MSKCC	GRCh37	4	55592162	55592162	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143179681		P-0007400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	322	433	0	ENST00000288135.5:c.1486G>A	p.Asp496Asn	p.D496N	ENST00000288135	NM_000222.2	496	Gat/Aat																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280007	66280007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	238	300	1	ENST00000273854.3:c.1682C>A	p.Pro561Gln	p.P561Q	ENST00000273854	NM_004439.5	561	cCa/cAa																																																																														
MDC1	0	MSKCC	GRCh37	6	30680746	30680746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	375	381	0	ENST00000376406.3:c.973G>T	p.Gly325Cys	p.G325C	ENST00000376406	NM_014641.2	325	Ggc/Tgc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652312	36652312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	214	193	0	ENST00000244741.5:c.434C>G	p.Thr145Ser	p.T145S	ENST00000244741	NM_000389.4	145	aCc/aGc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740430	145740430	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	263	180	0	ENST00000428558.2:c.1510A>G	p.Thr504Ala	p.T504A	ENST00000428558	NM_004260.3	504	Aca/Gca																																																																														
MLL2	0	MSKCC	GRCh37	12	49428614	49428614	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	457	443	0	ENST00000301067.7:c.10336G>T	p.Val3446Leu	p.V3446L	ENST00000301067	NM_003482.3	3446	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579582	7579583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	231	231	0	ENST00000269305.4:c.104dup	p.Leu35PhefsTer8	p.L35Ffs*8	ENST00000269305	NM_001126112.2	35	ttg/ttTg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332697	153332697	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	412	473	0	ENST00000281708.4:c.259del	p.Val87Ter	p.V87*	ENST00000281708	NM_033632.3	87	Gta/ta																																																																														
RB1	0	MSKCC	GRCh37	13	48878102	48878103	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0007400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	521	105	0	ENST00000267163.4:c.54_55delinsTT	p.Glu19Ter	p.E19*	ENST00000267163	NM_000321.2	18	gcGGaa/gcTTaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	234	306	0	ENST00000269305.4:c.770T>A	p.Leu257Gln	p.L257Q	ENST00000269305	NM_001126112.2	257	cTg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112173278	112173278	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	130	278	0	ENST00000257430.4:c.1987C>T	p.Gln663Ter	p.Q663*	ENST00000257430	NM_000038.5	663	Caa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	42	400	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
LATS1	0	MSKCC	GRCh37	6	150004217	150004217	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	135	367	1	ENST00000253339.5:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000253339		670	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	166	337	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
MEN1	0	MSKCC	GRCh37	11	64577161	64577161	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	256	450	0	ENST00000337652.1:c.421C>T	p.Gln141Ter	p.Q141*	ENST00000337652	NM_130803.2	141	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056262	27056262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	126	325	0	ENST00000324856.7:c.1258C>T	p.Gln420Ter	p.Q420*	ENST00000324856	NM_006015.4	420	Cag/Tag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177956	56177956	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	463	492	0	ENST00000399503.3:c.2929C>T	p.Gln977Ter	p.Q977*	ENST00000399503	NM_005921.1	977	Caa/Taa																																																																														
RAD21	0	MSKCC	GRCh37	8	117868915	117868915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	193	354	0	ENST00000297338.2:c.784G>A	p.Asp262Asn	p.D262N	ENST00000297338	NM_006265.2	262	Gac/Aac																																																																														
MLL	0	MSKCC	GRCh37	11	118355658	118355658	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	178	394	0	ENST00000534358.1:c.4300T>C	p.Cys1434Arg	p.C1434R	ENST00000534358	NM_005933.3	1434	Tgc/Cgc																																																																														
MGA	0	MSKCC	GRCh37	15	42041912	42041912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	284	575	0	ENST00000219905.7:c.6107G>A	p.Cys2036Tyr	p.C2036Y	ENST00000219905	NM_001164273.1	2036	tGc/tAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	115	308	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0007514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	95	284	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0007514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	80	329	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
RBM10	0	MSKCC	GRCh37	X	47045009	47045009	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	35	296	0	ENST00000329236.7:c.2101C>T	p.Gln701Ter	p.Q701*	ENST00000329236	NM_001204466.1	701	Cag/Tag																																																																														
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	78	324	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa																																																																														
VHL	0	MSKCC	GRCh37	3	10183734	10183734	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	100	400	0	ENST00000256474.2:c.203C>A	p.Ser68Ter	p.S68*	ENST00000256474	NM_000551.3	68	tCg/tAg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52678795	52678795	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	75	349	0	ENST00000394830.3:c.824C>G	p.Ser275Ter	p.S275*	ENST00000394830	NM_018313.4	275	tCa/tGa																																																																														
BAP1	0	MSKCC	GRCh37	3	52437506	52437506	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	153	905	0	ENST00000460680.1:c.1655del	p.Asp552ValfsTer19	p.D552Vfs*19	ENST00000460680	NM_004656.3	552	gAt/gt																																																																														
EGFR	0	MSKCC	GRCh37	7	55259535	55259555	+	inframe_deletion	In_Frame_Del	DEL	GAAGAGAAAGAATACCATGCA	GAAGAGAAAGAATACCATGCA	-			P-0007540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	63	504	0	ENST00000275493.2:c.2597_2617del	p.Glu866_Glu872del	p.E866_E872del	ENST00000275493	NM_005228.3	865	GAAGAGAAAGAATACCATGCA/-																																																																														
VEGFA	0	MSKCC	GRCh37	6	43739021	43739025	+	missense_variant	Missense_Mutation	ONP	CCTTG	CCTTG	GCTTC			P-0007540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	63	635	0	ENST00000523873.1:c.38_42delinsGCTTC	p.Ala13_Leu14delinsGlyPhe	p.A13_L14delinsGF	ENST00000523873		13	gCCTTG/gGCTTC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	290	323	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	221	146	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	271	239	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0007560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	276	370	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15961231	15961231	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	235	225	0	ENST00000268712.3:c.6158A>G	p.Asp2053Gly	p.D2053G	ENST00000268712	NM_006311.3	2053	gAt/gGt																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63554492	63554493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	330	291	0	ENST00000307078.5:c.246dup	p.His83ThrfsTer58	p.H83Tfs*58	ENST00000307078	NM_004655.3	82	-/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	151	172	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	137	304	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	394	442	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	212	363	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa																																																																														
MGA	0	MSKCC	GRCh37	15	42041117	42041117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	280	551	3	ENST00000219905.7:c.5495G>A	p.Arg1832Gln	p.R1832Q	ENST00000219905	NM_001164273.1	1832	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112174490	112174490	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	131	288	0	ENST00000257430.4:c.3199C>T	p.Gln1067Ter	p.Q1067*	ENST00000257430	NM_000038.5	1067	Caa/Taa																																																																														
GNA11	0	MSKCC	GRCh37	19	3118944	3118944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	338	334	0	ENST00000078429.4:c.628C>T	p.Arg210Trp	p.R210W	ENST00000078429	NM_002067.2	210	Cgg/Tgg																																																																														
POLD1	0	MSKCC	GRCh37	19	50912813	50912813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	220	440	0	ENST00000440232.2:c.2044C>T	p.Arg682Trp	p.R682W	ENST00000440232	NM_002691.3	682	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	52	163	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SOX9	0	MSKCC	GRCh37	17	70120527	70120527	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	170	212	0	ENST00000245479.2:c.1529G>C	p.Ter510SerextTer49	p.*510Sext*49	ENST00000245479	NM_000346.3	510	tGa/tCa																																																																														
NF1	0	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	151	275	1	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099283	157099283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	167	156	0	ENST00000346085.5:c.220G>A	p.Glu74Lys	p.E74K	ENST00000346085	NM_020732.3	74	Gaa/Aaa																																																																														
IRS1	0	MSKCC	GRCh37	2	227662458	227662458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	75	150	0	ENST00000305123.5:c.997G>A	p.Glu333Lys	p.E333K	ENST00000305123	NM_005544.2	333	Gaa/Aaa																																																																														
ATR	0	MSKCC	GRCh37	3	142274965	142274965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	58	205	0	ENST00000350721.4:c.2095G>A	p.Asp699Asn	p.D699N	ENST00000350721	NM_001184.3	699	Gat/Aat																																																																														
ATR	0	MSKCC	GRCh37	3	142278135	142278135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	102	332	0	ENST00000350721.4:c.1690G>A	p.Asp564Asn	p.D564N	ENST00000350721	NM_001184.3	564	Gat/Aat																																																																														
TP63	0	MSKCC	GRCh37	3	189586455	189586455	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	126	168	0	ENST00000264731.3:c.1079G>C	p.Arg360Thr	p.R360T	ENST00000264731	NM_003722.4	360	aGa/aCa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133733	55133733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	168	413	0	ENST00000257290.5:c.946G>A	p.Glu316Lys	p.E316K	ENST00000257290	NM_006206.4	316	Gaa/Aaa																																																																														
MLL3	0	MSKCC	GRCh37	7	151851469	151851469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	182	356	1	ENST00000262189.6:c.12022G>A	p.Glu4008Lys	p.E4008K	ENST00000262189	NM_170606.2	4008	Gag/Aag																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209357	98209357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	164	310	1	ENST00000331920.6:c.4181G>A	p.Arg1394Gln	p.R1394Q	ENST00000331920	NM_000264.3	1394	cGa/cAa																																																																														
MLL	0	MSKCC	GRCh37	11	118373275	118373275	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	149	432	0	ENST00000534358.1:c.6668C>G	p.Ser2223Cys	p.S2223C	ENST00000534358	NM_005933.3	2223	tCt/tGt																																																																														
ARID2	0	MSKCC	GRCh37	12	46205226	46205226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	178	374	2	ENST00000334344.6:c.310C>T	p.His104Tyr	p.H104Y	ENST00000334344	NM_152641.2	104	Cat/Tat																																																																														
GLI1	0	MSKCC	GRCh37	12	57861119	57861119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1580	240	441	0	ENST00000228682.2:c.916G>A	p.Glu306Lys	p.E306K	ENST00000228682	NM_005269.2	306	Gaa/Aaa																																																																														
TSC2	0	MSKCC	GRCh37	16	2133699	2133699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	133	245	0	ENST00000219476.3:c.3887C>G	p.Ser1296Cys	p.S1296C	ENST00000219476	NM_000548.3	1296	tCc/tGc																																																																														
SOCS1	0	MSKCC	GRCh37	16	11348945	11348945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	80	148	0	ENST00000332029.2:c.391C>G	p.Gln131Glu	p.Q131E	ENST00000332029	NM_003745.1	131	Cag/Gag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829319	72829319	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	272	504	0	ENST00000268489.5:c.7262C>G	p.Ser2421Ter	p.S2421*	ENST00000268489	NM_006885.3	2421	tCa/tGa																																																																														
NF1	0	MSKCC	GRCh37	17	29576024	29576024	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	139	310	0	ENST00000358273.4:c.3997G>T	p.Glu1333Ter	p.E1333*	ENST00000358273	NM_001042492.2	1333	Gag/Tag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881145	37881145	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	248	303	0	ENST00000269571.5:c.2474G>A	p.Trp825Ter	p.W825*	ENST00000269571		825	tGg/tAg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881307	37881307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	278	253	0	ENST00000269571.5:c.2499G>A	p.Met833Ile	p.M833I	ENST00000269571		833	atG/atA																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881588	37881588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	274	317	0	ENST00000269571.5:c.2658C>G	p.Ile886Met	p.I886M	ENST00000269571		886	atC/atG																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533019	63533019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	165	374	0	ENST00000307078.5:c.1875G>C	p.Glu625Asp	p.E625D	ENST00000307078	NM_004655.3	625	gaG/gaC																																																																														
PTPRS	0	MSKCC	GRCh37	19	5265192	5265192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	117	212	0	ENST00000357368.4:c.395C>G	p.Ser132Cys	p.S132C	ENST00000357368	NM_002850.3	132	tCt/tGt																																																																														
PAK7	0	MSKCC	GRCh37	20	9546941	9546941	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	89	188	0	ENST00000353224.5:c.1081C>G	p.Gln361Glu	p.Q361E	ENST00000353224	NM_177990.2	361	Caa/Gaa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264072	46264072	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	215	508	0	ENST00000371998.3:c.1119G>C	p.Gln373His	p.Q373H	ENST00000371998		373	caG/caC																																																																														
AR	0	MSKCC	GRCh37	X	66941785	66941785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	214	377	0	ENST00000374690.3:c.2429C>T	p.Ala810Val	p.A810V	ENST00000374690	NM_000044.3	810	gCa/gTa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37883676	37883869	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGGCTGCAAAGCCTCCCCACACATGACCCCAGCCCTCTACAGCGGTACAGTGAGGACCCCACAGTACCCCTGCCCTCTGAGACTGATGGCTACGTTGCCCCCCTGACCTGCAGCCCCCAGCCTGGTATGGAGTCCAGTCTAAGCAGAGAGACTGATGGGCAGGGGAGGTGGGACCTTCAGCCCAGGGTCCACT	GGGGCTGCAAAGCCTCCCCACACATGACCCCAGCCCTCTACAGCGGTACAGTGAGGACCCCACAGTACCCCTGCCCTCTGAGACTGATGGCTACGTTGCCCCCCTGACCTGCAGCCCCCAGCCTGGTATGGAGTCCAGTCTAAGCAGAGAGACTGATGGGCAGGGGAGGTGGGACCTTCAGCCCAGGGTCCACT	-			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	193	344	0	ENST00000269571.5:c.3289_3412+70del		p.X1097_splice	ENST00000269571		1097																																																																															
CDH1	0	MSKCC	GRCh37	16	68849569	68849570	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	460	497	0	ENST00000261769.5:c.1476_1477del	p.Arg492SerfsTer44	p.R492Sfs*44	ENST00000261769	NM_004360.3	491	aAG/a																																																																														
TBX3	0	MSKCC	GRCh37	12	115120645	115120646	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0007577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	436	419	2	ENST00000257566.3:c.359_360dup	p.Thr121AlafsTer19	p.T121Afs*19	ENST00000257566	NM_016569.3	120	-/GC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	63	369	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	28	315	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0007608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	346	926	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	146	292	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0007608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	443	457	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	322	493	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212568848	212568848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	192	450	1	ENST00000342788.4:c.1270G>T	p.Gly424Cys	p.G424C	ENST00000342788	NM_005235.2	424	Ggt/Tgt																																																																														
ATR	0	MSKCC	GRCh37	3	142279190	142279190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	383	506	1	ENST00000350721.4:c.1456G>T	p.Val486Phe	p.V486F	ENST00000350721	NM_001184.3	486	Gtt/Ttt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178128	56178128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	170	385	0	ENST00000399503.3:c.3101C>T	p.Pro1034Leu	p.P1034L	ENST00000399503	NM_005921.1	1034	cCt/cTt																																																																														
STK11	0	MSKCC	GRCh37	19	1220410	1220410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	309	515	0	ENST00000326873.7:c.503A>T	p.His168Leu	p.H168L	ENST00000326873	NM_000455.4	168	cAt/cTt																																																																														
TCF3	0	MSKCC	GRCh37	19	1621169	1621169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	386	553	0	ENST00000344749.5:c.977G>T	p.Gly326Val	p.G326V	ENST00000344749	NM_001136139.2	326	gGc/gTc																																																																														
CIC	0	MSKCC	GRCh37	19	42791760	42791760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	261	361	0	ENST00000575354.2:c.646G>T	p.Ala216Ser	p.A216S	ENST00000575354	NM_015125.3	216	Gcc/Tcc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022589	31022589	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	524	527	1	ENST00000375687.4:c.2074C>T	p.Gln692Ter	p.Q692*	ENST00000375687	NM_015338.5	692	Cag/Tag																																																																														
BCOR	0	MSKCC	GRCh37	X	39934205	39934205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	564	738	2	ENST00000378444.4:c.394G>T	p.Val132Leu	p.V132L	ENST00000378444	NM_001123385.1	132	Gtg/Ttg																																																																														
RBM10	0	MSKCC	GRCh37	X	47044887	47044887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	256	434	0	ENST00000329236.7:c.1979G>T	p.Ser660Ile	p.S660I	ENST00000329236	NM_001204466.1	660	aGt/aTt																																																																														
AMER1	0	MSKCC	GRCh37	X	63411080	63411082	+	stop_gained	Nonsense_Mutation	ONP	CTC	CTC	TTT			P-0007638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	205	567	0	ENST00000330258.3:c.2085_2087delinsAAA	p.Trp695_Arg696delinsTer	p.W695_R696delins*	ENST00000330258	NM_152424.3	695	tgGAGg/tgAAAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	324	461	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0007648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	710	387	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
FBXW7	0	MSKCC	GRCh37	4	153268147	153268147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	528	389	0	ENST00000281708.4:c.661C>T	p.Gln221Ter	p.Q221*	ENST00000281708	NM_033632.3	221	Caa/Taa																																																																														
ARID2	0	MSKCC	GRCh37	12	46245240	46245240	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	39	303	0	ENST00000334344.6:c.3334C>T	p.Gln1112Ter	p.Q1112*	ENST00000334344	NM_152641.2	1112	Cag/Tag																																																																														
FANCA	0	MSKCC	GRCh37	16	89839771	89839771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1127	63	462	2	ENST00000389301.3:c.1922C>T	p.Ala641Val	p.A641V	ENST00000389301	NM_000135.2	641	gCa/gTa																																																																														
FUBP1	0	MSKCC	GRCh37	1	78428472	78428473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAG			P-0007648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	218	386	0	ENST00000370768.2:c.1326_1327insCTAT	p.Ile443LeufsTer49	p.I443Lfs*49	ENST00000370768	NM_003902.3	442	-/CTAT																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	265	426	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
RIT1	0	MSKCC	GRCh37	1	155874530	155874530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1380	345	656	0	ENST00000368323.3:c.229G>A	p.Ala77Thr	p.A77T	ENST00000368323	NM_006912.5	77	Gct/Act																																																																														
ATM	0	MSKCC	GRCh37	11	108137926	108137926	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199875915		P-0007668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	310	502	2	ENST00000278616.4:c.2495G>A	p.Arg832His	p.R832H	ENST00000278616	NM_000051.3	832	cGt/cAt																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31385095	31385095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	240	394	0	ENST00000328111.2:c.1480A>G	p.Ser494Gly	p.S494G	ENST00000328111	NM_006892.3	494	Agc/Ggc																																																																														
BAP1	0	MSKCC	GRCh37	3	52443751	52443754	+	frameshift_variant	Frame_Shift_Del	DEL	TGAA	TGAA	-			P-0007668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	129	290	0	ENST00000460680.1:c.43_46del	p.Phe15ProfsTer56	p.F15Pfs*56	ENST00000460680	NM_004656.3	15	TTCAcc/cc																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792604	33792633	+	inframe_deletion	In_Frame_Del	DEL	GGGCGCGGGGTGCGGGCTGGGCACGGGCGT	GGGCGCGGGGTGCGGGCTGGGCACGGGCGT	-			P-0007668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	26	16	0	ENST00000498907.2:c.688_717del	p.Thr230_Pro239del	p.T230_P239del	ENST00000498907	NM_004364.3	230	ACGCCCGTGCCCAGCCCGCACCCCGCGCCC/-																																																																														
GATA3	0	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	216	528	2	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																														
APC	0	MSKCC	GRCh37	5	112173949	112173949	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007685-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			769	108	315	0	ENST00000257430.4:c.2658G>C	p.Gln886His	p.Q886H	ENST00000257430	NM_000038.5	886	caG/caC																																																																														
MLL2	0	MSKCC	GRCh37	12	49425476	49425476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007685-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	168	665	0	ENST00000301067.7:c.13012C>G	p.Pro4338Ala	p.P4338A	ENST00000301067	NM_003482.3	4338	Ccc/Gcc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3777918	3777918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007685-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1395	179	558	1	ENST00000262367.5:c.7130C>T	p.Ser2377Leu	p.S2377L	ENST00000262367	NM_004380.2	2377	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	103	434	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	62	200	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	95	546	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	135	586	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732976	30732976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	147	345	0	ENST00000359013.4:c.1664C>T	p.Thr555Ile	p.T555I	ENST00000359013	NM_001024847.2	555	aCa/aTa																																																																														
SOX9	0	MSKCC	GRCh37	17	70117961	70117961	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	107	160	1	ENST00000245479.2:c.429G>A	p.Trp143Ter	p.W143*	ENST00000245479	NM_000346.3	143	tgG/tgA																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395663	45395664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	94	454	0	ENST00000262160.6:c.470dup	p.Asp158GlyfsTer2	p.D158Gfs*2	ENST00000262160	NM_005901.5	157	aag/aaAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	752	332	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361207	66361207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	446	353	0	ENST00000273854.3:c.965G>C	p.Cys322Ser	p.C322S	ENST00000273854	NM_004439.5	322	tGt/tCt																																																																														
IL7R	0	MSKCC	GRCh37	5	35876252	35876252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	296	352	0	ENST00000303115.3:c.1044C>G	p.Asn348Lys	p.N348K	ENST00000303115	NM_002185.3	348	aaC/aaG																																																																														
SYK	0	MSKCC	GRCh37	9	93639905	93639905	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201438493		P-0007694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	240	325	0	ENST00000375746.1:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000375746	NM_001174167.1	412	Gct/Act																																																																														
RB1	0	MSKCC	GRCh37	13	49039340	49039340	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	353	569	0	ENST00000267163.4:c.2326-1G>T		p.X776_splice	ENST00000267163	NM_000321.2	776																																																																															
RUNX1	0	MSKCC	GRCh37	21	36171600	36171600	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0007759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	32	200	0	ENST00000300305.3:c.965C>G	p.Ser322Ter	p.S322*	ENST00000300305		322	tCa/tGa																																																																														
CDC73	0	MSKCC	GRCh37	1	193219825	193219825	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	102	415	0	ENST00000367435.3:c.1579T>G	p.Ser527Ala	p.S527A	ENST00000367435	NM_024529.4	527	Tcg/Gcg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143003275	143003275	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	97	466	0	ENST00000262992.4:c.2551A>C	p.Met851Leu	p.M851L	ENST00000262992	NM_001101669.1	851	Atg/Ctg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0007775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	82	487	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715685	30715685	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	70	438	0	ENST00000359013.4:c.1418A>G	p.Tyr473Cys	p.Y473C	ENST00000359013	NM_001024847.2	473	tAc/tGc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38285888	38285888	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	39	774	0	ENST00000425967.3:c.523G>C	p.Asp175His	p.D175H	ENST00000425967	NM_001174067.1	175	Gat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7578272	7578273	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0007775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	73	569	1	ENST00000269305.4:c.576_577delinsTT	p.Gln192_His193delinsHisTyr	p.Q192_H193delinsHY	ENST00000269305	NM_001126112.2	192	caGCat/caTTat																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827927	40827927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	207	457	2	ENST00000373198.4:c.2501G>A	p.Arg834His	p.R834H	ENST00000373198	NM_133170.3	834	cGc/cAc																																																																														
AR	0	MSKCC	GRCh37	X	66765875	66765875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	146	466	0	ENST00000374690.3:c.887A>G	p.Asp296Gly	p.D296G	ENST00000374690	NM_000044.3	296	gAc/gGc																																																																														
VHL	0	MSKCC	GRCh37	3	10183862	10183864	+	missense_variant	Missense_Mutation	ONP	AGC	AGC	CCT			P-0007806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	123	173	0	ENST00000256474.2:c.331_333delinsCCT	p.Ser111Pro	p.S111P	ENST00000256474	NM_000551.3	111	AGC/CCT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	1258	327	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
EGFR	0	MSKCC	GRCh37	7	55220272	55220272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	181	372	0	ENST00000275493.2:c.662G>T	p.Gly221Val	p.G221V	ENST00000275493	NM_005228.3	221	gGg/gTg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157502187	157502187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	105	315	0	ENST00000346085.5:c.3220G>A	p.Asp1074Asn	p.D1074N	ENST00000346085	NM_020732.3	1074	Gac/Aac																																																																														
IL10	0	MSKCC	GRCh37	1	206945695	206945695	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	83	374	0	ENST00000423557.1:c.86G>C	p.Ser29Thr	p.S29T	ENST00000423557	NM_000572.2	29	aGc/aCc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134825442	134825442	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	91	325	0	ENST00000398015.3:c.958A>T	p.Thr320Ser	p.T320S	ENST00000398015	NM_004441.4	320	Act/Tct																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356205	66356205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	88	366	0	ENST00000273854.3:c.1292T>C	p.Leu431Pro	p.L431P	ENST00000273854	NM_004439.5	431	cTa/cCa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527578	157527578	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142466273		P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	92	290	0	ENST00000346085.5:c.5303C>T	p.Pro1768Leu	p.P1768L	ENST00000346085	NM_020732.3	1768	cCg/cTg																																																																														
ATM	0	MSKCC	GRCh37	11	108115559	108115559	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	178	391	0	ENST00000278616.4:c.707T>G	p.Leu236Arg	p.L236R	ENST00000278616	NM_000051.3	236	cTt/cGt																																																																														
POLE	0	MSKCC	GRCh37	12	133212482	133212482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	238	360	0	ENST00000320574.5:c.5807G>C	p.Gly1936Ala	p.G1936A	ENST00000320574	NM_006231.2	1936	gGa/gCa																																																																														
NF1	0	MSKCC	GRCh37	17	29508439	29508439	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	131	396	0	ENST00000358273.4:c.587-1G>T		p.X196_splice	ENST00000358273	NM_001042492.2	196																																																																															
BRIP1	0	MSKCC	GRCh37	17	59763223	59763223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	65	418	0	ENST00000259008.2:c.2879G>C	p.Ser960Thr	p.S960T	ENST00000259008	NM_032043.2	960	aGt/aCt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714435	40714435	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	69	331	0	ENST00000373198.4:c.3962A>C	p.Glu1321Ala	p.E1321A	ENST00000373198	NM_133170.3	1321	gAg/gCg																																																																														
MED12	0	MSKCC	GRCh37	X	70349956	70349956	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	139	425	0	ENST00000374080.3:c.3939T>G	p.Ser1313Arg	p.S1313R	ENST00000374080		1313	agT/agG																																																																														
MED12	0	MSKCC	GRCh37	X	70357225	70357225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	119	280	0	ENST00000374080.3:c.5740C>G	p.Gln1914Glu	p.Q1914E	ENST00000374080		1914	Cag/Gag																																																																														
XIAP	0	MSKCC	GRCh37	X	123019988	123019989	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	221	431	0	ENST00000355640.3:c.476_477insG	p.Met160HisfsTer3	p.M160Hfs*3	ENST00000355640		159	gcc/gcGc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032188	10032190	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0007813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	69	378	0	ENST00000330684.3:c.633_635del	p.Glu211del	p.E211del	ENST00000330684	NM_001134407.1	211	gaGGAt/gat																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	152	498	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	183	829	2	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	45	148	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	112	420	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	134	406	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	123	417	2	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	90	348	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141523	11141523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	100	457	0	ENST00000344626.4:c.3500C>T	p.Ser1167Leu	p.S1167L	ENST00000344626	NM_003072.3	1167	tCg/tTg																																																																														
GATA3	0	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	179	551	2	ENST00000346208.3:c.404delC	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	128	704	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41275290	41275290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113411271		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	105	289	1	ENST00000349496.5:c.1456C>T	p.Arg486Cys	p.R486C	ENST00000349496	NM_001904.3	486	Cgc/Tgc																																																																														
ATM	0	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	138	440	1	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	46	291	0	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																																																														
CIC	0	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	141	424	1	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																														
APC	0	MSKCC	GRCh37	5	112151245	112151246	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	137	424	0	ENST00000257430.4:c.893_894del	p.His298LeufsTer28	p.H298Lfs*28	ENST00000257430	NM_000038.5	296	agCAca/agca																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	117	437	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828653	72828653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1339	298	901	3	ENST00000268489.5:c.7928G>A	p.Arg2643His	p.R2643H	ENST00000268489	NM_006885.3	2643	cGt/cAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	189	542	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101170	41101170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41279256		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	59	177	0	ENST00000373198.4:c.1186G>A	p.Val396Ile	p.V396I	ENST00000373198	NM_133170.3	396	Gta/Ata																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098363	11098363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	162	526	0	ENST00000344626.4:c.885del	p.Thr296ArgfsTer7	p.T296Rfs*7	ENST00000344626	NM_003072.3	294	gCc/gc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100073	27100073	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	189	490	1	ENST00000324856.7:c.3869C>T	p.Thr1290Met	p.T1290M	ENST00000324856	NM_006015.4	1290	aCg/aTg																																																																														
JAK1	0	MSKCC	GRCh37	1	65301111	65301111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	151	467	0	ENST00000342505.4:c.3337C>T	p.Arg1113Cys	p.R1113C	ENST00000342505	NM_002227.2	1113	Cgc/Tgc																																																																														
MSH2	0	MSKCC	GRCh37	2	47630496	47630496	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	162	364	1	ENST00000233146.2:c.166G>T	p.Glu56Ter	p.E56*	ENST00000233146	NM_000251.2	56	Gag/Tag																																																																														
MSH2	0	MSKCC	GRCh37	2	47705428	47705428	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	113	456	1	ENST00000233146.2:c.2228C>A	p.Ser743Ter	p.S743*	ENST00000233146	NM_000251.2	743	tCa/tAa																																																																														
REL	0	MSKCC	GRCh37	2	61149483	61149483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	128	412	0	ENST00000295025.8:c.1673A>G	p.Gln558Arg	p.Q558R	ENST00000295025	NM_002908.2	558	cAa/cGa																																																																														
CTLA4	0	MSKCC	GRCh37	2	204735624	204735624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	59	139	0	ENST00000302823.3:c.425G>A	p.Gly142Asp	p.G142D	ENST00000302823	NM_005214.4	142	gGc/gAc																																																																														
MST1R	0	MSKCC	GRCh37	3	49936518	49936518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	291	789	4	ENST00000296474.3:c.1409G>A	p.Arg470His	p.R470H	ENST00000296474	NM_002447.2	470	cGt/cAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927976	178927976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	40	211	0	ENST00000263967.3:c.1254A>T	p.Glu418Asp	p.E418D	ENST00000263967	NM_006218.2	418	gaA/gaT																																																																														
SOX2	0	MSKCC	GRCh37	3	181431044	181431044	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	75	267	0	ENST00000325404.1:c.896A>C	p.Gln299Pro	p.Q299P	ENST00000325404	NM_003106.3	299	cAg/cCg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1805428	1805428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	154	451	0	ENST00000260795.2:c.940G>A	p.Ala314Thr	p.A314T	ENST00000260795		314	Gct/Act																																																																														
KDR	0	MSKCC	GRCh37	4	55955593	55955593	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	125	627	3	ENST00000263923.4:c.3352C>T	p.Arg1118Ter	p.R1118*	ENST00000263923	NM_002253.2	1118	Cga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187522449	187522449	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	217	581	0	ENST00000441802.2:c.11614C>T	p.Arg3872Ter	p.R3872*	ENST00000441802	NM_005245.3	3872	Cga/Tga																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177632	56177632	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	141	429	0	ENST00000399503.3:c.2605A>G	p.Ile869Val	p.I869V	ENST00000399503	NM_005921.1	869	Atc/Gtc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729606	41729606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1101	214	777	0	ENST00000242208.4:c.923G>A	p.Arg308His	p.R308H	ENST00000242208	NM_002192.2	308	cGt/cAt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98211379	98211379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	158	488	0	ENST00000331920.6:c.3776C>T	p.Thr1259Ile	p.T1259I	ENST00000331920	NM_000264.3	1259	aCa/aTa																																																																														
KLF4	0	MSKCC	GRCh37	9	110250158	110250158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	24	304	0	ENST00000374672.4:c.517T>C	p.Tyr173His	p.Y173H	ENST00000374672	NM_004235.4	173	Tat/Cat																																																																														
ABL1	0	MSKCC	GRCh37	9	133750268	133750268	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	58	383	3	ENST00000318560.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000318560	NM_005157.4	367	Cga/Tga																																																																														
GATA3	0	MSKCC	GRCh37	10	8106016	8106016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	97	346	1	ENST00000346208.3:c.836C>T	p.Thr279Met	p.T279M	ENST00000346208		279	aCg/aTg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189497	94189497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	112	402	0	ENST00000323929.3:c.1508G>A	p.Arg503His	p.R503H	ENST00000323929	NM_005591.3	503	cGt/cAt																																																																														
ATM	0	MSKCC	GRCh37	11	108114842	108114842	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145355104		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	66	319	0	ENST00000278616.4:c.659C>T	p.Ala220Val	p.A220V	ENST00000278616	NM_000051.3	220	gCg/gTg																																																																														
ATM	0	MSKCC	GRCh37	11	108175495	108175495	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	149	386	0	ENST00000278616.4:c.5590A>G	p.Thr1864Ala	p.T1864A	ENST00000278616	NM_000051.3	1864	Aca/Gca																																																																														
MLL2	0	MSKCC	GRCh37	12	49435716	49435716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	168	548	2	ENST00000301067.7:c.6167A>G	p.Asp2056Gly	p.D2056G	ENST00000301067	NM_003482.3	2056	gAc/gGc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426836	121426836	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	106	327	0	ENST00000257555.6:c.526+1G>A		p.X176_splice	ENST00000257555		176																																																																															
IGF1R	0	MSKCC	GRCh37	15	99465432	99465432	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	137	426	1	ENST00000268035.6:c.2257C>T	p.Arg753Ter	p.R753*	ENST00000268035	NM_000875.3	753	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67662384	67662384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112926498		P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	212	579	0	ENST00000264010.4:c.1630C>T	p.Arg544Cys	p.R544C	ENST00000264010	NM_006565.3	544	Cgc/Tgc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347591	89347591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	288	826	0	ENST00000301030.4:c.5359C>A	p.Leu1787Ile	p.L1787I	ENST00000301030	NM_001256183.1	1787	Ctt/Att																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7989483	7989483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	103	379	0	ENST00000319144.4:c.203G>A	p.Arg68His	p.R68H	ENST00000319144	NM_001139.2	68	cGc/cAc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15967432	15967432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	198	539	3	ENST00000268712.3:c.5171G>A	p.Arg1724Gln	p.R1724Q	ENST00000268712	NM_006311.3	1724	cGg/cAg																																																																														
FLCN	0	MSKCC	GRCh37	17	17118353	17118353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	196	517	0	ENST00000285071.4:c.1484T>C	p.Leu495Pro	p.L495P	ENST00000285071	NM_144997.5	495	cTg/cCg																																																																														
GNA11	0	MSKCC	GRCh37	19	3110150	3110150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	71	227	0	ENST00000078429.4:c.140C>T	p.Thr47Met	p.T47M	ENST00000078429	NM_002067.2	47	aCg/aTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10291143	10291143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	233	595	1	ENST00000340748.4:c.328G>A	p.Gly110Arg	p.G110R	ENST00000340748		110	Ggg/Agg																																																																														
BRD4	0	MSKCC	GRCh37	19	15355296	15355296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	26	102	0	ENST00000263377.2:c.2327C>T	p.Pro776Leu	p.P776L	ENST00000263377	NM_058243.2	776	cCg/cTg																																																																														
MEF2B	0	MSKCC	GRCh37	19	19256659	19256659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	120	321	0	ENST00000162023.5:c.1054C>T	p.Arg352Trp	p.R352W	ENST00000162023		352	Cgg/Tgg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023453	31023453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	50	348	0	ENST00000375687.4:c.2938A>G	p.Ile980Val	p.I980V	ENST00000375687	NM_015338.5	980	Att/Gtt																																																																														
NCOA3	0	MSKCC	GRCh37	20	46256698	46256698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	189	790	0	ENST00000371998.3:c.754C>T	p.Arg252Cys	p.R252C	ENST00000371998		252	Cgc/Tgc																																																																														
NF2	0	MSKCC	GRCh37	22	30054252	30054252	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	120	554	0	ENST00000338641.4:c.674G>A	p.Arg225Gln	p.R225Q	ENST00000338641	NM_000268.3	225	cGg/cAg																																																																														
EP300	0	MSKCC	GRCh37	22	41513481	41513481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	59	381	0	ENST00000263253.7:c.385G>A	p.Ala129Thr	p.A129T	ENST00000263253	NM_001429.3	129	Gca/Aca																																																																														
DOT1L	0	MSKCC	GRCh37	19	2208958	2208958	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	156	590	0	ENST00000398665.3:c.992del	p.Asn331ThrfsTer56	p.N331Tfs*56	ENST00000398665	NM_032482.2	330	Aaa/aa																																																																														
MST1	0	MSKCC	GRCh37	3	49723126	49723128	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	167	497	0	ENST00000449682.2:c.1288_1290delGAG	p.Glu430del	p.E430del	ENST00000449682	NM_020998.3	430	GAG/-																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495415	56495417	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	189	518	0	ENST00000267101.3:c.3609_3611del	p.Arg1205del	p.R1205del	ENST00000267101	NM_001982.3	1202	cGGAgg/cgg																																																																														
MLL2	0	MSKCC	GRCh37	12	49424443	49424443	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	148	463	0	ENST00000301067.7:c.13780del	p.Ala4594ProfsTer23	p.A4594Pfs*23	ENST00000301067	NM_003482.3	4594	Gcc/cc																																																																														
B2M	567	MSKCC	GRCh37	15	45007689	45007690	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	116	332	0	ENST00000558401.1:c.137_138del	p.Tyr46CysfsTer10	p.Y46Cfs*10	ENST00000558401	NM_004048.2	46	TAt/t																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821553	72821554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	113	442	0	ENST00000268489.5:c.10621dup	p.Glu3541GlyfsTer30	p.E3541Gfs*30	ENST00000268489	NM_006885.3	3541	gag/gGag																																																																														
STAT5B	0	MSKCC	GRCh37	17	40376865	40376866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1410	272	859	0	ENST00000293328.3:c.306dup	p.Met103HisfsTer14	p.M103Hfs*14	ENST00000293328	NM_012448.3	102	-/C																																																																														
PAX5	0	MSKCC	GRCh37	9	37020769	37020769	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	71	510	0	ENST00000358127.4:c.76del	p.Val26PhefsTer3	p.V26Ffs*3	ENST00000358127	NM_001280556.1	26	Gtt/tt																																																																														
MGA	0	MSKCC	GRCh37	15	42059170	42059170	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1157	289	828	3	ENST00000219905.7:c.8895delC	p.Thr2966ProfsTer4	p.T2966Pfs*4	ENST00000219905	NM_001164273.1	2964	Ccc/cc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	78	498	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47041259	47041259	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	104	681	1	ENST00000329236.7:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000329236	NM_001204466.1	485	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	182	540	0	ENST00000269305.4:c.757A>G	p.Thr253Ala	p.T253A	ENST00000269305	NM_001126112.2	253	Acc/Gcc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38945595	38945595	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0007856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	97	312	0	ENST00000357387.3:c.4631C>G	p.Ser1544Ter	p.S1544*	ENST00000357387	NM_152756.3	1544	tCa/tGa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061185	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCACTTGAAGCGCTTCTG	GCACTTGAAGCGCTTCTG	-			P-0007856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	84	255	0	ENST00000250448.2:c.787_804del	p.Gln263_Cys268del	p.Q263_C268del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGC/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0007859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	18	657	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	63	483	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
POLD1	0	MSKCC	GRCh37	19	50919683	50919683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	139	652	1	ENST00000440232.2:c.2851C>T	p.Pro951Ser	p.P951S	ENST00000440232	NM_002691.3	951	Ccc/Tcc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53225147	53225147	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	151	340	0	ENST00000375401.3:c.3071del	p.Glu1024GlyfsTer31	p.E1024Gfs*31	ENST00000375401	NM_004187.3	1024	gAg/gg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			202	157	500	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			403	67	645	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0007870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			207	138	552	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032474	12032474	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			98	46	320	0	ENST00000353533.5:c.910C>T	p.Arg304Ter	p.R304*	ENST00000353533	NM_003010.3	304	Cga/Tga																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0007870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	48	369	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860281	151860281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007870-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	40	437	0	ENST00000262189.6:c.10381G>A	p.Asp3461Asn	p.D3461N	ENST00000262189	NM_170606.2	3461	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	61	410	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
MET	0	MSKCC	GRCh37	7	116371755	116371755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	35	382	0	ENST00000397752.3:c.1234C>T	p.Arg412Cys	p.R412C	ENST00000397752	NM_000245.2	412	Cgc/Tgc																																																																														
TET1	0	MSKCC	GRCh37	10	70332409	70332409	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200477577		P-0007889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	43	379	0	ENST00000373644.4:c.314C>T	p.Ala105Val	p.A105V	ENST00000373644	NM_030625.2	105	gCg/gTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	982	387	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	200	353	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141463	11141463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	132	427	0	ENST00000344626.4:c.3440C>T	p.Ser1147Phe	p.S1147F	ENST00000344626	NM_003072.3	1147	tCt/tTt																																																																														
RB1	0	MSKCC	GRCh37	13	48951045	48951063	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCCTAAAGAACTGCACAG	CTCCTAAAGAACTGCACAG	-			P-0007896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	31	243	0	ENST00000267163.4:c.1216-9_1225del		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	620	404	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577035	7577035	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	299	481	0	ENST00000269305.4:c.903delA	p.Ser303AlafsTer42	p.S303Afs*42	ENST00000269305	NM_001126112.2	301	ccA/cc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412639	139412639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	59	387	1	ENST00000277541.6:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000277541	NM_017617.3	402	tCg/tTg																																																																														
MSH2	0	MSKCC	GRCh37	2	47693852	47693852	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	70	544	0	ENST00000233146.2:c.1566C>G	p.Tyr522Ter	p.Y522*	ENST00000233146	NM_000251.2	522	taC/taG																																																																														
MST1R	0	MSKCC	GRCh37	3	49924771	49924771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	117	805	2	ENST00000296474.3:c.4172G>A	p.Arg1391Gln	p.R1391Q	ENST00000296474	NM_002447.2	1391	cGg/cAg																																																																														
RAD21	0	MSKCC	GRCh37	8	117862937	117862937	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs202084322		P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	73	662	0	ENST00000297338.2:c.1540C>T	p.Gln514Ter	p.Q514*	ENST00000297338	NM_006265.2	514	Cag/Tag																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737680	145737680	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	187	341	1	ENST00000428558.2:c.3083T>A	p.Val1028Glu	p.V1028E	ENST00000428558	NM_004260.3	1028	gTg/gAg																																																																														
MED12	0	MSKCC	GRCh37	X	70350017	70350017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	245	231	0	ENST00000374080.3:c.4000G>C	p.Glu1334Gln	p.E1334Q	ENST00000374080		1334	Gag/Cag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	1216	365	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	176	354	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	113	480	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
YES1	0	MSKCC	GRCh37	18	724596	724596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	292	261	0	ENST00000314574.4:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000314574	NM_005433.3	487	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	241	466	1	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	339	314	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
KDR	0	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	188	432	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	81	334	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0008014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	102	353	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7980033	7980033	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	49	297	0	ENST00000319144.4:c.1304T>A	p.Val435Asp	p.V435D	ENST00000319144	NM_001139.2	435	gTc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578445	7578449	+	missense_variant	Missense_Mutation	ONP	ATGGC	ATGGC	CTGGG			P-0008014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	78	283	0	ENST00000269305.4:c.481_485delinsCCCAG	p.Ala161_Ile162delinsProSer	p.A161_I162delinsPS	ENST00000269305	NM_001126112.2	161	GCCATc/CCCAGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	86	183	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	48	289	1	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112174865	112174865	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	70	352	0	ENST00000257430.4:c.3574A>T	p.Lys1192Ter	p.K1192*	ENST00000257430	NM_000038.5	1192	Aaa/Taa																																																																														
MLL2	0	MSKCC	GRCh37	12	49437469	49437469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	97	522	0	ENST00000301067.7:c.5416G>A	p.Ala1806Thr	p.A1806T	ENST00000301067	NM_003482.3	1806	Gcc/Acc																																																																														
DICER1	0	MSKCC	GRCh37	14	95597889	95597889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	100	400	0	ENST00000343455.3:c.395C>G	p.Ser132Cys	p.S132C	ENST00000343455	NM_177438.2	132	tCt/tGt																																																																														
MGA	0	MSKCC	GRCh37	15	42052601	42052601	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0008067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	65	701	0	ENST00000219905.7:c.7272T>G	p.Tyr2424Ter	p.Y2424*	ENST00000219905	NM_001164273.1	2424	taT/taG																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	198	241	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	198	241	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	198	241	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244124	153244124	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	183	434	0	ENST00000281708.4:c.2033C>G	p.Ser678Ter	p.S678*	ENST00000281708	NM_033632.3	678	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	112	361	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16261941	16261941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	64	155	0	ENST00000375759.3:c.9206C>G	p.Ser3069Cys	p.S3069C	ENST00000375759	NM_015001.2	3069	tCc/tGc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71090594	71090594	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	50	579	0	ENST00000318789.4:c.754T>A	p.Leu252Met	p.L252M	ENST00000318789	NM_032682.5	252	Ttg/Atg																																																																														
BCL6	0	MSKCC	GRCh37	3	187447562	187447562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	63	377	0	ENST00000232014.4:c.631G>C	p.Glu211Gln	p.E211Q	ENST00000232014	NM_001130845.1	211	Gag/Cag																																																																														
FAT1	0	MSKCC	GRCh37	4	187542861	187542861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	180	457	0	ENST00000441802.2:c.4879C>T	p.Arg1627Ter	p.R1627*	ENST00000441802	NM_005245.3	1627	Cga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187629184	187629184	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	186	412	1	ENST00000441802.2:c.1798C>T	p.Gln600Ter	p.Q600*	ENST00000441802	NM_005245.3	600	Cag/Tag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170024	32170024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	156	516	0	ENST00000375023.3:c.3584G>A	p.Gly1195Glu	p.G1195E	ENST00000375023	NM_004557.3	1195	gGa/gAa																																																																														
MYC	0	MSKCC	GRCh37	8	128750561	128750561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	361	540	0	ENST00000377970.2:c.98C>T	p.Ser33Leu	p.S33L	ENST00000377970	NM_002467.4	33	tCg/tTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821278	72821278	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148140195		P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	236	666	0	ENST00000268489.5:c.10897C>T	p.Pro3633Ser	p.P3633S	ENST00000268489	NM_006885.3	3633	Cct/Tct																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577111	+	inframe_deletion	In_Frame_Del	DEL	CCTCTGTGCGCCGGTCTCTCCCAGGACAGG	CCTCTGTGCGCCGGTCTCTCCCAGGACAGG	-			P-0008105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	60	517	0	ENST00000269305.4:c.827_856del	p.Ala276_Glu285del	p.A276_E285del	ENST00000269305	NM_001126112.2	276	gCCTGTCCTGGGAGAGACCGGCGCACAGAGGaa/gaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008142-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			312	92	196	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008142-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			581	171	329	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008142-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			296	135	206	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
RNF43	0	MSKCC	GRCh37	17	56440680	56440680	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008142-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			653	388	508	0	ENST00000407977.2:c.538C>T	p.Gln180Ter	p.Q180*	ENST00000407977		180	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7577589	7577590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008142-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			314	191	286	0	ENST00000269305.4:c.691dup	p.Thr231AsnfsTer9	p.T231Nfs*9	ENST00000269305	NM_001126112.2	231	acc/aAcc																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	44	225	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SETD2	0	MSKCC	GRCh37	3	47163512	47163512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	29	211	0	ENST00000409792.3:c.2614C>T	p.Gln872Ter	p.Q872*	ENST00000409792	NM_014159.6	872	Caa/Taa																																																																														
INHA	0	MSKCC	GRCh37	2	220439922	220439922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	63	450	0	ENST00000243786.2:c.775C>A	p.His259Asn	p.H259N	ENST00000243786	NM_002191.3	259	Cat/Aat																																																																														
MST1R	0	MSKCC	GRCh37	3	49935554	49935554	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	58	430	1	ENST00000296474.3:c.1810G>T	p.Glu604Ter	p.E604*	ENST00000296474	NM_002447.2	604	Gag/Tag																																																																														
PTCH1	0	MSKCC	GRCh37	9	98232191	98232191	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	48	232	0	ENST00000331920.6:c.1751A>G	p.Asn584Ser	p.N584S	ENST00000331920	NM_000264.3	584	aAt/aGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107084	27107084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	28	106	0	ENST00000324856.7:c.6696del	p.Arg2233GlyfsTer34	p.R2233Gfs*34	ENST00000324856	NM_006015.4	2232	cGg/cg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	CA			P-0008158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	29	194	0	ENST00000256078.4:c.38_39delinsTG	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGC/gTG																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101683	27101683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	147	383	3	ENST00000324856.7:c.4965G>T	p.Gln1655His	p.Q1655H	ENST00000324856	NM_006015.4	1655	caG/caT																																																																														
TP53	0	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	240	593	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696642	47696642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1186	281	655	0	ENST00000347630.2:c.306C>G	p.Phe102Leu	p.F102L	ENST00000347630	NM_001007230.1	102	ttC/ttG																																																																														
KDM6A	0	MSKCC	GRCh37	X	44820555	44820556	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	274	412	0	ENST00000377967.4:c.254dup	p.Leu85PhefsTer4	p.L85Ffs*4	ENST00000377967	NM_021140.2	84	-/T																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106843	27106855	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCGCTTCCTCA	GTGCGCTTCCTCA	-			P-0008168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	157	321	0	ENST00000324856.7:c.6457_6469del	p.Arg2153ThrfsTer43	p.R2153Tfs*43	ENST00000324856	NM_006015.4	2152	GTGCGCTTCCTCAgt/gt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112587	115112588	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0008168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	66	329	0	ENST00000257566.3:c.1150_1152dup	p.Glu384dup	p.E384dup	ENST00000257566	NM_016569.3	384	-/GAG																																																																														
RBM10	0	MSKCC	GRCh37	X	47041654	47041654	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	220	275	0	ENST00000329236.7:c.1646del	p.Lys549ArgfsTer77	p.K549Rfs*77	ENST00000329236	NM_001204466.1	549	Aag/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	56	278	0	ENST00000269305.4:c.761T>G	p.Ile254Ser	p.I254S	ENST00000269305	NM_001126112.2	254	aTc/aGc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584607	48584607	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	48	377	0	ENST00000342988.3:c.780C>A	p.Tyr260Ter	p.Y260*	ENST00000342988	NM_005359.5	260	taC/taA																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0008181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	68	346	0	ENST00000256078.4:c.34_35delGGinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																																																														
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0008191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	132	359	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
NTRK1	0	MSKCC	GRCh37	1	156838341	156838341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	128	482	1	ENST00000524377.1:c.619G>A	p.Val207Met	p.V207M	ENST00000524377	NM_002529.3	207	Gtg/Atg																																																																														
XPO1	0	MSKCC	GRCh37	2	61725837	61725837	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	23	320	0	ENST00000401558.2:c.730A>G	p.Thr244Ala	p.T244A	ENST00000401558	NM_003400.3	244	Acc/Gcc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636760	8636760	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	20	352	0	ENST00000356435.5:c.149A>G	p.Asp50Gly	p.D50G	ENST00000356435		50	gAc/gGc																																																																														
ARID2	0	MSKCC	GRCh37	12	46244796	46244796	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	79	499	1	ENST00000334344.6:c.2890G>T	p.Gly964Ter	p.G964*	ENST00000334344	NM_152641.2	964	Gga/Tga																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008213-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			417	436	301	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912298	32912298	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008213-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			265	288	635	0	ENST00000380152.3:c.3806T>A	p.Val1269Asp	p.V1269D	ENST00000380152		1269	gTt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0008213-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			166	314	486	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008213-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			165	361	511	0	ENST00000269305.4:c.811G>C	p.Glu271Gln	p.E271Q	ENST00000269305	NM_001126112.2	271	Gag/Cag																																																																														
CTCF	0	MSKCC	GRCh37	16	67645935	67645935	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008213-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			149	447	369	1	ENST00000264010.4:c.863A>G	p.His288Arg	p.H288R	ENST00000264010	NM_006565.3	288	cAc/cGc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831831	72831831	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008213-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			264	325	667	0	ENST00000268489.5:c.4750C>T	p.Gln1584Ter	p.Q1584*	ENST00000268489	NM_006885.3	1584	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	157	596	2	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
TET2	0	MSKCC	GRCh37	4	106196213	106196213	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	67	266	0	ENST00000380013.4:c.4546C>T	p.Arg1516Ter	p.R1516*	ENST00000380013	NM_001127208.2	1516	Cga/Tga																																																																														
MLL2	0	MSKCC	GRCh37	12	49437701	49437701	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1497	115	726	1	ENST00000301067.7:c.5269C>T	p.Arg1757Ter	p.R1757*	ENST00000301067	NM_003482.3	1757	Cga/Tga																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9775915	9775915	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	83	294	0	ENST00000377346.4:c.379G>C	p.Glu127Gln	p.E127Q	ENST00000377346	NM_005026.3	127	Gag/Cag																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50492581	50492581	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	64	501	0	ENST00000394963.4:c.1477C>T	p.Arg493Ter	p.R493*	ENST00000394963	NM_003076.4	493	Cga/Tga																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774795	73774795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	93	587	0	ENST00000254810.4:c.292G>A	p.Glu98Lys	p.E98K	ENST00000254810	NM_005324.3	98	Gaa/Aaa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31017724	31017724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	113	325	1	ENST00000375687.4:c.586G>A	p.Asp196Asn	p.D196N	ENST00000375687	NM_015338.5	196	Gat/Aat																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42839664	42839664	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	61	499	0	ENST00000398585.3:c.1575G>C	p.Met525Ile	p.M525I	ENST00000398585	NM_001135099.1	525	atG/atC																																																																														
PTEN	0	MSKCC	GRCh37	10	89692953	89692953	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	70	457	0	ENST00000371953.3:c.437T>G	p.Leu146Ter	p.L146*	ENST00000371953	NM_000314.4	146	tTa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	72	623	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
CASP8	0	MSKCC	GRCh37	2	202151254	202151254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	43	881	0	ENST00000358485.4:c.1554G>A	p.Met518Ile	p.M518I	ENST00000358485	NM_001080125.1	518	atG/atA																																																																														
IRS1	0	MSKCC	GRCh37	2	227660894	227660894	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs13306470		P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	83	569	1	ENST00000305123.5:c.2561G>T	p.Arg854Leu	p.R854L	ENST00000305123	NM_005544.2	854	cGc/cTc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390911	89390911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	64	559	0	ENST00000336596.2:c.977C>A	p.Pro326Gln	p.P326Q	ENST00000336596	NM_005233.5	326	cCa/cAa																																																																														
GSK3B	0	MSKCC	GRCh37	3	119631575	119631575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	46	697	0	ENST00000316626.5:c.691G>A	p.Ala231Thr	p.A231T	ENST00000316626		231	Gcc/Acc																																																																														
KIT	0	MSKCC	GRCh37	4	55593414	55593414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	47	737	1	ENST00000288135.5:c.1571C>A	p.Pro524His	p.P524H	ENST00000288135	NM_000222.2	524	cCt/cAt																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858176	27858176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	87	854	0	ENST00000359303.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000359303	NM_003535.2	132	cGt/cTt																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910707	29910707	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	73	666	0	ENST00000376809.5:c.247T>A	p.Tyr83Asn	p.Y83N	ENST00000376809	NM_002116.7	83	Tat/Aat																																																																														
ETV1	0	MSKCC	GRCh37	7	13978841	13978841	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	68	568	0	ENST00000405192.2:c.266A>G	p.Lys89Arg	p.K89R	ENST00000405192	NM_001163147.1	89	aAg/aGg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8507326	8507326	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	104	723	1	ENST00000356435.5:c.1652A>T	p.Tyr551Phe	p.Y551F	ENST00000356435		551	tAc/tTc																																																																														
FGF3	0	MSKCC	GRCh37	11	69625363	69625363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	57	614	0	ENST00000334134.2:c.430C>A	p.Arg144Ser	p.R144S	ENST00000334134	NM_005247.2	144	Cgc/Agc																																																																														
TSHR	0	MSKCC	GRCh37	14	81609883	81609883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	91	531	0	ENST00000298171.2:c.1481G>A	p.Cys494Tyr	p.C494Y	ENST00000298171	NM_000369.2	494	tGc/tAc																																																																														
NF1	0	MSKCC	GRCh37	17	29559089	29559089	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	27	103	0	ENST00000358273.4:c.3198-2A>G		p.X1066_splice	ENST00000358273	NM_001042492.2	1066																																																																															
SMAD4	0	MSKCC	GRCh37	18	48575219	48575219	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	73	521	0	ENST00000342988.3:c.413C>G	p.Ser138Ter	p.S138*	ENST00000342988	NM_005359.5	138	tCa/tGa																																																																														
ATRX	0	MSKCC	GRCh37	X	76939118	76939118	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	47	692	0	ENST00000373344.5:c.1630C>G	p.His544Asp	p.H544D	ENST00000373344	NM_000489.3	544	Cat/Gat																																																																														
RARA	0	MSKCC	GRCh37	17	38510560	38510560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	80	421	1	ENST00000254066.5:c.814C>T	p.Arg272Trp	p.R272W	ENST00000254066	NM_000964.3	272	Cgg/Tgg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240039	53240039	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0008249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	70	268	0	ENST00000375401.3:c.1402G>T	p.Glu468Ter	p.E468*	ENST00000375401	NM_004187.3	468	Gag/Tag																																																																														
VHL	0	MSKCC	GRCh37	3	10191528	10191529	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	166	529	0	ENST00000256474.2:c.523dup	p.Tyr175LeufsTer81	p.Y175Lfs*81	ENST00000256474	NM_000551.3	174	aat/aaTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0008295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	1015	537	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600417	10600417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	1023	584	0	ENST00000171111.5:c.1438G>T	p.Gly480Trp	p.G480W	ENST00000171111	NM_203500.1	480	Ggg/Tgg																																																																														
GATA2	0	MSKCC	GRCh37	3	128205672	128205672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	378	434	0	ENST00000341105.2:c.203C>A	p.Ala68Glu	p.A68E	ENST00000341105	NM_032638.4	68	gCg/gAg																																																																														
HGF	0	MSKCC	GRCh37	7	81335607	81335607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	268	433	0	ENST00000222390.5:c.1753G>T	p.Ala585Ser	p.A585S	ENST00000222390	NM_000601.4	585	Gcc/Tcc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94223998	94223998	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0008295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	243	328	0	ENST00000323929.3:c.153+1G>T		p.X51_splice	ENST00000323929	NM_005591.3	51																																																																															
NF1	0	MSKCC	GRCh37	17	29486068	29486068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	190	291	0	ENST00000358273.4:c.245C>T	p.Ser82Phe	p.S82F	ENST00000358273	NM_001042492.2	82	tCt/tTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	240	352	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	82	313	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78617593	78617593	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	69	318	0	ENST00000306801.3:c.331G>T	p.Glu111Ter	p.E111*	ENST00000306801	NM_020761.2	111	Gag/Tag																																																																														
AURKA	0	MSKCC	GRCh37	20	54945363	54945363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	81	352	0	ENST00000312783.6:c.1063G>A	p.Gly355Arg	p.G355R	ENST00000312783	NM_198436.1	355	Gga/Aga																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123480499	123480499	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs148554414		P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	87	311	1	ENST00000371139.4:c.7G>T	p.Ala3Ser	p.A3S	ENST00000371139	NM_001114937.2	3	Gca/Tca																																																																														
MRE11A	0	MSKCC	GRCh37	11	94169023	94169054	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAAATGTCTTCTTCCACATCTGATTCATCT	GAAAAATGTCTTCTTCCACATCTGATTCATCT	-			P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	48	506	0	ENST00000323929.3:c.1938_1969del	p.Asp647TyrfsTer28	p.D647Yfs*28	ENST00000323929	NM_005591.3	646	gtAGATGAATCAGATGTGGAAGAAGACATTTTTCct/gtct																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197801	66197802	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	67	511	1	ENST00000273854.3:c.2897_2898delinsAA	p.Ala966Glu	p.A966E	ENST00000273854	NM_004439.5	966	gCC/gAA																																																																														
FAT1	0	MSKCC	GRCh37	4	187531111	187531112	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0008300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	54	409	0	ENST00000441802.2:c.9911_9912delinsAG	p.Thr3304Lys	p.T3304K	ENST00000441802	NM_005245.3	3304	aCA/aAG																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	44	349	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
EGFR	0	MSKCC	GRCh37	7	55240786	55240786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	11	369	1	ENST00000275493.2:c.2030G>A	p.Arg677His	p.R677H	ENST00000275493	NM_005228.3	677	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112174910	112174910	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	76	448	0	ENST00000257430.4:c.3622del	p.Thr1208ProfsTer57	p.T1208Pfs*57	ENST00000257430	NM_000038.5	1207	Aaa/aa																																																																														
MYCN	0	MSKCC	GRCh37	2	16085995	16085995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	72	485	1	ENST00000281043.3:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000281043	NM_005378.4	391	Cgc/Tgc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149456994	149456994	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	49	322	0	ENST00000286301.3:c.734C>A	p.Ala245Glu	p.A245E	ENST00000286301	NM_005211.3	245	gCa/gAa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023186	31023186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	29	577	0	ENST00000375687.4:c.2671G>A	p.Val891Ile	p.V891I	ENST00000375687	NM_015338.5	891	Gtt/Att																																																																														
SOX2	0	MSKCC	GRCh37	3	181430441	181430441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1268	236	458	0	ENST00000325404.1:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000325404	NM_003106.3	98	cGa/cAa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821349	72821349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	278	492	1	ENST00000268489.5:c.10826C>T	p.Ser3609Phe	p.S3609F	ENST00000268489	NM_006885.3	3609	tCc/tTc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175713	176175713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1283	275	661	0	ENST00000367669.3:c.402C>G	p.Phe134Leu	p.F134L	ENST00000367669	NM_022457.5	134	ttC/ttG																																																																														
ASXL2	0	MSKCC	GRCh37	2	25994346	25994346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1663	259	550	0	ENST00000435504.4:c.467C>G	p.Ser156Cys	p.S156C	ENST00000435504		156	tCt/tGt																																																																														
ATR	0	MSKCC	GRCh37	3	142176493	142176493	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1350	214	506	0	ENST00000350721.4:c.7608T>G	p.Cys2536Trp	p.C2536W	ENST00000350721	NM_001184.3	2536	tgT/tgG																																																																														
KIT	0	MSKCC	GRCh37	4	55575630	55575630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1357	223	603	0	ENST00000288135.5:c.1156G>A	p.Glu386Lys	p.E386K	ENST00000288135	NM_000222.2	386	Gaa/Aaa																																																																														
KDR	0	MSKCC	GRCh37	4	55979637	55979637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	173	409	0	ENST00000263923.4:c.810G>C	p.Lys270Asn	p.K270N	ENST00000263923	NM_002253.2	270	aaG/aaC																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271408	26271408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1259	787	988	1	ENST00000305910.3:c.205C>A	p.Gln69Lys	p.Q69K	ENST00000305910	NM_003534.2	69	Caa/Aaa																																																																														
ROS1	0	MSKCC	GRCh37	6	117679058	117679058	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	329	457	0	ENST00000368508.3:c.3763G>C	p.Asp1255His	p.D1255H	ENST00000368508	NM_002944.2	1255	Gat/Cat																																																																														
INHBA	0	MSKCC	GRCh37	7	41729435	41729435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1616	368	794	0	ENST00000242208.4:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000242208	NM_002192.2	365	tCa/tTa																																																																														
MLL3	0	MSKCC	GRCh37	7	151851469	151851469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	228	500	0	ENST00000262189.6:c.12022G>C	p.Glu4008Gln	p.E4008Q	ENST00000262189	NM_170606.2	4008	Gag/Cag																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101910003	101910003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	309	469	0	ENST00000374994.4:c.1323G>C	p.Met441Ile	p.M441I	ENST00000374994	NM_004612.2	441	atG/atC																																																																														
BIRC3	0	MSKCC	GRCh37	11	102199674	102199674	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	210	479	0	ENST00000263464.3:c.1079C>G	p.Ser360Ter	p.S360*	ENST00000263464	NM_001165.4	360	tCa/tGa																																																																														
KDM5A	0	MSKCC	GRCh37	12	417168	417168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	812	254	0	ENST00000399788.2:c.3382G>A	p.Ala1128Thr	p.A1128T	ENST00000399788	NM_001042603.1	1128	Gca/Aca																																																																														
ARID2	0	MSKCC	GRCh37	12	46246279	46246279	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	560	407	0	ENST00000334344.6:c.4373C>G	p.Ser1458Ter	p.S1458*	ENST00000334344	NM_152641.2	1458	tCa/tGa																																																																														
LATS2	0	MSKCC	GRCh37	13	21619850	21619850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	106	306	0	ENST00000382592.4:c.316G>A	p.Glu106Lys	p.E106K	ENST00000382592	NM_014572.2	106	Gaa/Aaa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3790511	3790511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	183	488	0	ENST00000262367.5:c.4022G>C	p.Arg1341Pro	p.R1341P	ENST00000262367	NM_004380.2	1341	cGa/cCa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72923766	72923766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	306	811	0	ENST00000268489.5:c.3312C>G	p.Ile1104Met	p.I1104M	ENST00000268489	NM_006885.3	1104	atC/atG																																																																														
FANCA	0	MSKCC	GRCh37	16	89813004	89813004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	196	429	0	ENST00000389301.3:c.3501G>T	p.Leu1167Phe	p.L1167F	ENST00000389301	NM_000135.2	1167	ttG/ttT																																																																														
SUZ12	0	MSKCC	GRCh37	17	30264375	30264375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	108	202	0	ENST00000322652.5:c.110C>T	p.Ser37Leu	p.S37L	ENST00000322652	NM_015355.2	37	tCg/tTg																																																																														
INSR	0	MSKCC	GRCh37	19	7142826	7142826	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	106	203	0	ENST00000302850.5:c.2542+1G>T		p.X848_splice	ENST00000302850	NM_000208.2	848																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11098417	11098417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	158	293	0	ENST00000344626.4:c.935C>G	p.Ser312Cys	p.S312C	ENST00000344626	NM_003072.3	312	tCc/tGc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40710530	40710530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	120	303	0	ENST00000373198.4:c.4321G>A	p.Glu1441Lys	p.E1441K	ENST00000373198	NM_133170.3	1441	Gag/Aag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139397632	139397633	+	splice_donor_variant	Splice_Site	INS	-	-	CTCTGCAC			P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	756	329	0	ENST00000277541.6:c.5161_5167+1dup		p.X1721_splice	ENST00000277541	NM_017617.3	1721																																																																															
TP53	7157	MSKCC	GRCh37	17	7579855	7579855	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1131691018		P-0008353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	394	537	0	ENST00000269305.4:c.58del	p.Ser20GlnfsTer24	p.S20Qfs*24	ENST00000269305	NM_001126112.2	20	Tca/ca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106099	27106099	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	81	377	1	ENST00000324856.7:c.5710G>T	p.Glu1904Ter	p.E1904*	ENST00000324856	NM_006015.4	1904	Gaa/Taa																																																																														
GATA3	0	MSKCC	GRCh37	10	8111507	8111508	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	121	518	0	ENST00000346208.3:c.994dupG	p.Ala332GlyfsTer20	p.A332Gfs*20	ENST00000346208		331	-/G																																																																														
FAT1	0	MSKCC	GRCh37	4	187539671	187539671	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	72	625	0	ENST00000441802.2:c.8069del	p.Tyr2690LeufsTer33	p.Y2690Lfs*33	ENST00000441802	NM_005245.3	2690	tAt/tt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	194	390	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0008389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	92	254	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	114	281	0				ENST00000310581	NM_198253.2																																																																																
CCND3	0	MSKCC	GRCh37	6	41908238	41908238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	101	422	2	ENST00000372991.4:c.284G>A	p.Arg95Gln	p.R95Q	ENST00000372991	NM_001760.3	95	cGa/cAa																																																																														
ATRX	0	MSKCC	GRCh37	X	76940452	76940452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	345	754	0	ENST00000373344.5:c.641A>G	p.Asp214Gly	p.D214G	ENST00000373344	NM_000489.3	214	gAt/gGt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176176108	176176109	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0008389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	118	278	0	ENST00000367669.3:c.6_7del	p.Gly3Ter	p.G3*	ENST00000367669	NM_022457.5	2	tcTGgt/tcgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			17	777	561	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	500	466	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	213	248	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
ERBB4	0	MSKCC	GRCh37	2	212426722	212426722	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	71	558	0	ENST00000342788.4:c.2393T>G	p.Leu798Arg	p.L798R	ENST00000342788	NM_005235.2	798	cTt/cGt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9783347	9783347	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148984508		P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	257	533	0	ENST00000377346.4:c.2591C>T	p.Pro864Leu	p.P864L	ENST00000377346	NM_005026.3	864	cCg/cTg																																																																														
IRS1	0	MSKCC	GRCh37	2	227662764	227662764	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	132	495	0	ENST00000305123.5:c.691A>C	p.Thr231Pro	p.T231P	ENST00000305123	NM_005544.2	231	Acg/Ccg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138426114	138426114	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	39	566	0	ENST00000289153.2:c.1417T>G	p.Leu473Val	p.L473V	ENST00000289153	NM_006219.2	473	Ttg/Gtg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143181666	143181666	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	88	702	0	ENST00000262992.4:c.667A>C	p.Asn223His	p.N223H	ENST00000262992	NM_001101669.1	223	Aac/Cac																																																																														
NSD1	0	MSKCC	GRCh37	5	176684078	176684078	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	141	637	0	ENST00000439151.2:c.4892A>C	p.Lys1631Thr	p.K1631T	ENST00000439151	NM_022455.4	1631	aAg/aCg																																																																														
TET1	0	MSKCC	GRCh37	10	70404656	70404656	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	237	623	2	ENST00000373644.4:c.2170G>T	p.Gly724Ter	p.G724*	ENST00000373644	NM_030625.2	724	Gga/Tga																																																																														
IGF2	0	MSKCC	GRCh37	11	2154238	2154238	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	254	483	0	ENST00000434045.2:c.690G>T	p.Glu230Asp	p.E230D	ENST00000434045	NM_001127598.1	230	gaG/gaT																																																																														
MEN1	0	MSKCC	GRCh37	11	64572633	64572633	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	270	418	0	ENST00000337652.1:c.1238A>C	p.Glu413Ala	p.E413A	ENST00000337652	NM_130803.2	413	gAg/gCg																																																																														
PGR	0	MSKCC	GRCh37	11	100999455	100999455	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	390	767	0	ENST00000325455.5:c.347A>C	p.Asp116Ala	p.D116A	ENST00000325455	NM_001202474.3	116	gAc/gCc																																																																														
POLE	0	MSKCC	GRCh37	12	133257833	133257833	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	328	530	0	ENST00000320574.5:c.95T>G	p.Leu32Arg	p.L32R	ENST00000320574	NM_006231.2	32	cTc/cGc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385216	41385216	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2234	141	576	0	ENST00000373198.4:c.745T>C	p.Ser249Pro	p.S249P	ENST00000373198	NM_133170.3	249	Tca/Cca																																																																														
SPEN	0	MSKCC	GRCh37	1	16259065	16259066	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0008396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	155	421	1	ENST00000375759.3:c.6330_6331delinsTT	p.Glu2111Ter	p.E2111*	ENST00000375759	NM_015001.2	2110	ggGGag/ggTTag																																																																														
CDH1	0	MSKCC	GRCh37	16	68772229	68772230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCTGCCA			P-0008424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	112	411	0	ENST00000261769.5:c.84_91dup	p.Gly31AlafsTer28	p.G31Afs*28	ENST00000261769	NM_004360.3	26	-/CCCTGCCA																																																																														
NTRK1	0	MSKCC	GRCh37	1	156837925	156837925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	156	448	0	ENST00000524377.1:c.458C>T	p.Ser153Phe	p.S153F	ENST00000524377	NM_002529.3	153	tCt/tTt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521768	89521768	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	105	215	0	ENST00000336596.2:c.2845G>A	p.Asp949Asn	p.D949N	ENST00000336596	NM_005233.5	949	Gat/Aat																																																																														
TP63	0	MSKCC	GRCh37	3	189587161	189587161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	123	411	0	ENST00000264731.3:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000264731	NM_003722.4	393	cGa/cAa																																																																														
TET2	0	MSKCC	GRCh37	4	106197273	106197273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	74	258	0	ENST00000380013.4:c.5606G>A	p.Gly1869Glu	p.G1869E	ENST00000380013	NM_001127208.2	1869	gGg/gAg																																																																														
FAT1	0	MSKCC	GRCh37	4	187558022	187558023	+	stop_gained	Nonsense_Mutation	DNP	CT	CT	TA			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	119	305	0	ENST00000441802.2:c.3688_3689delinsTA	p.Arg1230Ter	p.R1230*	ENST00000441802	NM_005245.3	1230	AGa/TAa																																																																														
IL7R	0	MSKCC	GRCh37	5	35875685	35875685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	141	526	0	ENST00000303115.3:c.872G>A	p.Arg291Lys	p.R291K	ENST00000303115	NM_002185.3	291	aGa/aAa																																																																														
IL7R	0	MSKCC	GRCh37	5	35876106	35876106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	179	472	0	ENST00000303115.3:c.898C>T	p.Pro300Ser	p.P300S	ENST00000303115	NM_002185.3	300	Cct/Tct																																																																														
IL7R	0	MSKCC	GRCh37	5	35876397	35876397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	92	338	0	ENST00000303115.3:c.1189G>A	p.Gly397Arg	p.G397R	ENST00000303115	NM_002185.3	397	Ggg/Agg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93964495	93964495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	216	573	0	ENST00000369303.4:c.2402G>A	p.Arg801Lys	p.R801K	ENST00000369303	NM_004440.3	801	aGg/aAg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982107	93982107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	191	596	0	ENST00000369303.4:c.1358G>A	p.Arg453Lys	p.R453K	ENST00000369303	NM_004440.3	453	aGa/aAa																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553722	106553722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	152	360	0	ENST00000369096.4:c.1687C>T	p.Pro563Ser	p.P563S	ENST00000369096	NM_001198.3	563	Ccc/Tcc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528525	157528525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	273	349	0	ENST00000346085.5:c.6250G>A	p.Glu2084Lys	p.E2084K	ENST00000346085	NM_020732.3	2084	Gag/Aag																																																																														
CARD11	0	MSKCC	GRCh37	7	2962810	2962810	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	124	344	1	ENST00000396946.4:c.2098C>A	p.Leu700Met	p.L700M	ENST00000396946	NM_032415.4	700	Ctg/Atg																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538835	23538835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	123	304	0	ENST00000380871.4:c.604G>A	p.Glu202Lys	p.E202K	ENST00000380871	NM_006167.3	202	Gag/Aag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500831	8500831	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202068877		P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	173	397	0	ENST00000356435.5:c.2051G>A	p.Arg684Gln	p.R684Q	ENST00000356435		684	cGg/cAg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521361	8521361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	176	386	0	ENST00000356435.5:c.877G>A	p.Asp293Asn	p.D293N	ENST00000356435		293	Gat/Aat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521384	8521384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	192	430	0	ENST00000356435.5:c.854G>A	p.Gly285Glu	p.G285E	ENST00000356435		285	gGa/gAa																																																																														
FANCC	0	MSKCC	GRCh37	9	97876984	97876984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	141	393	1	ENST00000289081.3:c.1081C>T	p.Arg361Trp	p.R361W	ENST00000289081	NM_000136.2	361	Cgg/Tgg																																																																														
RET	0	MSKCC	GRCh37	10	43596032	43596032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	151	395	1	ENST00000355710.3:c.199C>T	p.Arg67Cys	p.R67C	ENST00000355710	NM_020975.4	67	Cgc/Tgc																																																																														
MLL	0	MSKCC	GRCh37	11	118376112	118376112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	117	375	0	ENST00000534358.1:c.9505C>T	p.Pro3169Ser	p.P3169S	ENST00000534358	NM_005933.3	3169	Cct/Tct																																																																														
ARID2	0	MSKCC	GRCh37	12	46231280	46231280	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	160	329	0	ENST00000334344.6:c.1121-1G>A		p.X374_splice	ENST00000334344	NM_152641.2	374																																																																															
IGF1	0	MSKCC	GRCh37	12	102813309	102813309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	155	405	0	ENST00000307046.8:c.380C>T	p.Thr127Ile	p.T127I	ENST00000307046	NM_001111285.1	127	aCc/aTc																																																																														
FLT3	0	MSKCC	GRCh37	13	28623858	28623858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	161	472	0	ENST00000241453.7:c.796G>A	p.Glu266Lys	p.E266K	ENST00000241453	NM_004119.2	266	Gaa/Aaa																																																																														
FLT1	0	MSKCC	GRCh37	13	28903831	28903831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	174	508	0	ENST00000282397.4:c.2628G>A	p.Met876Ile	p.M876I	ENST00000282397	NM_002019.4	876	atG/atA																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515277	103515277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	189	423	0	ENST00000355739.4:c.1778C>T	p.Pro593Leu	p.P593L	ENST00000355739	NM_000123.3	593	cCt/cTt																																																																														
GREM1	0	MSKCC	GRCh37	15	33023288	33023288	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1252	270	738	0	ENST00000300177.4:c.397A>C	p.Lys133Gln	p.K133Q	ENST00000300177	NM_001191322.1	133	Aag/Cag																																																																														
MGA	0	MSKCC	GRCh37	15	42058882	42058882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	238	694	0	ENST00000219905.7:c.8602C>T	p.Pro2868Ser	p.P2868S	ENST00000219905	NM_001164273.1	2868	Cct/Tct																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576202	88576202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	146	269	1	ENST00000360948.2:c.1471C>T	p.Pro491Ser	p.P491S	ENST00000360948	NM_001012338.2	491	Ccc/Tcc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678389	88678389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	221	634	0	ENST00000360948.2:c.1147C>T	p.Pro383Ser	p.P383S	ENST00000360948	NM_001012338.2	383	Cca/Tca																																																																														
BLM	0	MSKCC	GRCh37	15	91334068	91334068	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	105	339	0	ENST00000355112.3:c.3013A>T	p.Ile1005Leu	p.I1005L	ENST00000355112	NM_000057.2	1005	Ata/Tta																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828119	72828119	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs144056966		P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1393	184	815	0	ENST00000268489.5:c.8462T>G	p.Val2821Gly	p.V2821G	ENST00000268489	NM_006885.3	2821	gTt/gGt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81904516	81904516	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	233	615	0	ENST00000359376.3:c.624A>C	p.Lys208Asn	p.K208N	ENST00000359376	NM_002661.3	208	aaA/aaC																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	191	518	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
NF1	0	MSKCC	GRCh37	17	29541468	29541468	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	31	134	0	ENST00000358273.4:c.1393-1G>A		p.X465_splice	ENST00000358273	NM_001042492.2	465																																																																															
NF1	0	MSKCC	GRCh37	17	29553539	29553539	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	97	260	1	ENST00000358273.4:c.2088G>A	p.Trp696Ter	p.W696*	ENST00000358273	NM_001042492.2	696	tgG/tgA																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39620667	39620667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	97	442	0	ENST00000262039.4:c.2065C>T	p.Pro689Ser	p.P689S	ENST00000262039	NM_002647.2	689	Cct/Tct																																																																														
TCF3	0	MSKCC	GRCh37	19	1612320	1612320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	297	625	1	ENST00000344749.5:c.1699C>T	p.Arg567Trp	p.R567W	ENST00000344749	NM_001136139.2	567	Cgg/Tgg																																																																														
TCF3	0	MSKCC	GRCh37	19	1619778	1619778	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	209	605	1	ENST00000344749.5:c.1167+1G>A		p.X389_splice	ENST00000344749	NM_001136139.2	389																																																																															
DNAJB1	0	MSKCC	GRCh37	19	14628990	14628990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	184	556	0	ENST00000254322.2:c.172C>T	p.Pro58Ser	p.P58S	ENST00000254322	NM_006145.1	58	Ccg/Tcg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15292580	15292580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs867505691		P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	138	351	0	ENST00000263388.2:c.2599G>A	p.Gly867Ser	p.G867S	ENST00000263388	NM_000435.2	867	Ggc/Agc																																																																														
AKT2	0	MSKCC	GRCh37	19	40748492	40748493	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	149	546	0	ENST00000392038.2:c.389_390delinsTT	p.Ser130Phe	p.S130F	ENST00000392038	NM_001626.4	130	tCC/tTT																																																																														
PTPRT	0	MSKCC	GRCh37	20	41514563	41514563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	128	284	1	ENST00000373198.4:c.98C>T	p.Ser33Phe	p.S33F	ENST00000373198	NM_133170.3	33	tCc/tTc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29105996	29105996	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	318	410	0	ENST00000328354.6:c.844C>T	p.His282Tyr	p.H282Y	ENST00000328354	NM_007194.3	282	Cat/Tat																																																																														
BCOR	0	MSKCC	GRCh37	X	39923673	39923673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	221	513	0	ENST00000378444.4:c.3418G>A	p.Gly1140Ser	p.G1140S	ENST00000378444	NM_001123385.1	1140	Ggt/Agt																																																																														
RBM10	0	MSKCC	GRCh37	X	47045784	47045784	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	151	442	1	ENST00000329236.7:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000329236	NM_001204466.1	811	Gag/Aag																																																																														
MED12	0	MSKCC	GRCh37	X	70341240	70341240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	218	612	1	ENST00000374080.3:c.799C>T	p.Pro267Ser	p.P267S	ENST00000374080		267	Cct/Tct																																																																														
MED12	0	MSKCC	GRCh37	X	70348461	70348461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	217	614	0	ENST00000374080.3:c.3368C>T	p.Ser1123Phe	p.S1123F	ENST00000374080		1123	tCt/tTt																																																																														
MED12	0	MSKCC	GRCh37	X	70354259	70354259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	218	547	0	ENST00000374080.3:c.4670G>T	p.Trp1557Leu	p.W1557L	ENST00000374080		1557	tGg/tTg																																																																														
ATRX	0	MSKCC	GRCh37	X	76776888	76776888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	149	704	0	ENST00000373344.5:c.7064C>T	p.Ser2355Leu	p.S2355L	ENST00000373344	NM_000489.3	2355	tCa/tTa																																																																														
ATRX	0	MSKCC	GRCh37	X	76849203	76849203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	232	654	0	ENST00000373344.5:c.6073G>A	p.Glu2025Lys	p.E2025K	ENST00000373344	NM_000489.3	2025	Gaa/Aaa																																																																														
ATRX	0	MSKCC	GRCh37	X	76939235	76939235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	216	610	0	ENST00000373344.5:c.1513G>A	p.Glu505Lys	p.E505K	ENST00000373344	NM_000489.3	505	Gaa/Aaa																																																																														
ATRX	0	MSKCC	GRCh37	X	76939382	76939382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1183	223	654	0	ENST00000373344.5:c.1366G>A	p.Asp456Asn	p.D456N	ENST00000373344	NM_000489.3	456	Gat/Aat																																																																														
PLCG2	0	MSKCC	GRCh37	16	81904520	81904522	+	frameshift_variant	Frame_Shift_Del	DEL	ATG	ATG	TT			P-0008434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	223	619	0	ENST00000359376.3:c.628_630delinsTT	p.Met210PhefsTer53	p.M210Ffs*53	ENST00000359376	NM_002661.3	210	ATG/TT																																																																														
EGFR	0	MSKCC	GRCh37	7	55223550	55223550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	93	412	0	ENST00000275493.2:c.917C>T	p.Ser306Leu	p.S306L	ENST00000275493	NM_005228.3	306	tCg/tTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	376	536	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99182493	99182493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	296	443	0	ENST00000074304.5:c.2296G>A	p.Asp766Asn	p.D766N	ENST00000074304	NM_001134224.1	766	Gac/Aac																																																																														
MGA	0	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1246	334	848	1	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																														
BTK	0	MSKCC	GRCh37	X	100611131	100611131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	401	607	3	ENST00000308731.7:c.1475G>A	p.Arg492His	p.R492H	ENST00000308731	NM_000061.2	492	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112173257	112173258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAAG			P-0008467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	254	364	0	ENST00000257430.4:c.1967_1970dup	p.Arg657SerfsTer18	p.R657Sfs*18	ENST00000257430	NM_000038.5	656	cta/cTAAGta																																																																														
APC	0	MSKCC	GRCh37	5	112175830	112175830	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	327	524	0	ENST00000257430.4:c.4539del	p.Glu1513AspfsTer10	p.E1513Dfs*10	ENST00000257430	NM_000038.5	1513	gaG/ga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023844	27023844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	332	365	1	ENST00000324856.7:c.950G>A	p.Ser317Asn	p.S317N	ENST00000324856	NM_006015.4	317	aGt/aAt																																																																														
MLL	0	MSKCC	GRCh37	11	118373568	118373568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	900	466	0	ENST00000534358.1:c.6961G>A	p.Gly2321Arg	p.G2321R	ENST00000534358	NM_005933.3	2321	Gga/Aga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	93	222	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829889	72829889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	232	628	2	ENST00000268489.5:c.6692C>T	p.Pro2231Leu	p.P2231L	ENST00000268489	NM_006885.3	2231	cCg/cTg																																																																														
APC	0	MSKCC	GRCh37	5	112162859	112162859	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	179	373	0	ENST00000257430.4:c.1464del	p.Thr489LeufsTer9	p.T489Lfs*9	ENST00000257430	NM_000038.5	488	cTt/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	28	360	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913357		P-0008490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	31	337	0	ENST00000288602.6:c.1405G>A	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Aga																																																																														
FAT1	0	MSKCC	GRCh37	4	187629247	187629247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	38	408	0	ENST00000441802.2:c.1735C>T	p.Pro579Ser	p.P579S	ENST00000441802	NM_005245.3	579	Ccc/Tcc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87482215	87482215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	44	489	0	ENST00000277120.3:c.1502C>T	p.Ser501Phe	p.S501F	ENST00000277120		501	tCc/tTc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103504620	103504620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	50	399	0	ENST00000355739.4:c.241C>T	p.Pro81Ser	p.P81S	ENST00000355739	NM_000123.3	81	Cca/Tca																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2494612	2494613	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0008490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	35	351	0	ENST00000355716.4:c.752_753delinsGA	p.Glu251Gly	p.E251G	ENST00000355716	NM_003820.2	251	gAG/gGA																																																																														
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	291	472	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	200	364	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	196	499	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	126	436	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
DAXX	0	MSKCC	GRCh37	6	33287156	33287156	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	97	317	0	ENST00000374542.5:c.1940+1G>C		p.X647_splice	ENST00000374542	NM_001141970.1	647																																																																															
ARID1B	0	MSKCC	GRCh37	6	157405827	157405827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	90	396	0	ENST00000346085.5:c.2069C>T	p.Thr690Met	p.T690M	ENST00000346085	NM_020732.3	690	aCg/aTg																																																																														
ETV1	0	MSKCC	GRCh37	7	13935705	13935705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	97	269	0	ENST00000405192.2:c.1151G>T	p.Gly384Val	p.G384V	ENST00000405192	NM_001163147.1	384	gGa/gTa																																																																														
ETV1	0	MSKCC	GRCh37	7	14026266	14026266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	173	376	0	ENST00000405192.2:c.178G>A	p.Glu60Lys	p.E60K	ENST00000405192	NM_001163147.1	60	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112175036	112175037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	73	387	0	ENST00000257430.4:c.3746dup	p.Cys1249TrpfsTer7	p.C1249Wfs*7	ENST00000257430	NM_000038.5	1249	tgc/tGgc																																																																														
STAG2	0	MSKCC	GRCh37	X	123179069	123179069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	133	459	0	ENST00000218089.9:c.518C>A	p.Ser173Tyr	p.S173Y	ENST00000218089	NM_001042749.1	173	tCc/tAc																																																																														
TP53	0	MSKCC	GRCh37	17	7576865	7576865	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0008538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	136	544	0	ENST00000269305.4:c.981T>G	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taT/taG																																																																														
RASA1	0	MSKCC	GRCh37	5	86674316	86674317	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0008538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	55	338	0	ENST00000274376.6:c.2450_2451del	p.Ser817TyrfsTer12	p.S817Yfs*12	ENST00000274376	NM_002890.2	816	gaCTct/gact																																																																														
PTEN	0	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0008548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	284	520	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-																																																																														
KIT	0	MSKCC	GRCh37	4	55599332	55599332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1328	36	563	0	ENST00000288135.5:c.2458G>T	p.Asp820Tyr	p.D820Y	ENST00000288135	NM_000222.2	820	Gat/Tat																																																																														
RB1	0	MSKCC	GRCh37	13	48954309	48954309	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	312	410	0	ENST00000267163.4:c.1430T>G	p.Leu477Arg	p.L477R	ENST00000267163	NM_000321.2	477	cTg/cGg																																																																														
KIT	0	MSKCC	GRCh37	4	55593640	55593660	+	inframe_deletion	In_Frame_Del	DEL	TTTACATAGACCCAACACAAC	TTTACATAGACCCAACACAAC	-			P-0008548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	497	626	0	ENST00000288135.5:c.1708_1728delTACATAGACCCAACACAACTT	p.Tyr570_Leu576del	p.Y570_L576del	ENST00000288135	NM_000222.2	569	gTTTACATAGACCCAACACAACtt/gtt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	131	486	0	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																																																														
JAK1	0	MSKCC	GRCh37	1	65311203	65311203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	283	459	0	ENST00000342505.4:c.2108G>T	p.Ser703Ile	p.S703I	ENST00000342505	NM_002227.2	703	aGc/aTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	202	259	0	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																																																														
FYN	0	MSKCC	GRCh37	6	111982979	111982979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2673	259	428	1	ENST00000368678.4:c.1568C>T	p.Ala523Val	p.A523V	ENST00000368678		523	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	257	304	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0008584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	214	375	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
PTPRS	0	MSKCC	GRCh37	19	5210692	5210692	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	134	284	0	ENST00000357368.4:c.5359C>T	p.Arg1787Trp	p.R1787W	ENST00000357368	NM_002850.3	1787	Cgg/Tgg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18576896	18576897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	124	436	0	ENST00000266497.5:c.2306dup	p.Asn769LysfsTer3	p.N769Kfs*3	ENST00000266497		768	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	99	907	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468029	50468029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	104	680	0	ENST00000331340.3:c.1264G>A	p.Ala422Thr	p.A422T	ENST00000331340	NM_006060.4	422	Gcg/Acg																																																																														
MTOR	0	MSKCC	GRCh37	1	11189847	11189847	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	94	842	0	ENST00000361445.4:c.5662T>A	p.Phe1888Ile	p.F1888I	ENST00000361445	NM_004958.3	1888	Ttc/Atc																																																																														
ATM	0	MSKCC	GRCh37	11	108190748	108190748	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	38	978	4	ENST00000278616.4:c.6415G>T	p.Glu2139Ter	p.E2139*	ENST00000278616	NM_000051.3	2139	Gaa/Taa																																																																														
ATM	0	MSKCC	GRCh37	11	108203609	108203609	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	34	668	2	ENST00000278616.4:c.7909C>T	p.Gln2637Ter	p.Q2637*	ENST00000278616	NM_000051.3	2637	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112173956	112173956	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	36	633	0	ENST00000257430.4:c.2667del	p.Val890SerfsTer26	p.V890Sfs*26	ENST00000257430	NM_000038.5	889	Aaa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	72	229	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	101	307	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	80	220	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	53	391	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa																																																																														
FAT1	0	MSKCC	GRCh37	4	187549351	187549351	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	136	453	0	ENST00000441802.2:c.4767G>C	p.Lys1589Asn	p.K1589N	ENST00000441802	NM_005245.3	1589	aaG/aaC																																																																														
INHBA	0	MSKCC	GRCh37	7	41729454	41729454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1553	334	1015	0	ENST00000242208.4:c.1075G>A	p.Ala359Thr	p.A359T	ENST00000242208	NM_002192.2	359	Gca/Aca																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41267223	41267235	+	protein_altering_variant	In_Frame_Del	DEL	TAAAATGGCAGTG	TAAAATGGCAGTG	A			P-0008594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	74	342	0	ENST00000349496.5:c.807_819delTAAAATGGCAGTGinsA	p.Lys270_Val273del	p.K270_V273del	ENST00000349496	NM_001904.3	269	gcTAAAATGGCAGTG/gcA																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	829	315	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																														
ROS1	0	MSKCC	GRCh37	6	117715389	117715389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	86	296	0	ENST00000368508.3:c.1100G>T	p.Gly367Val	p.G367V	ENST00000368508	NM_002944.2	367	gGa/gTa																																																																														
EGFR	0	MSKCC	GRCh37	7	55242448	55242449	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTCCCGTCGCTATCAAGG			P-0008602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2842	3741	290	0	ENST00000275493.2:c.2219_2236dup	p.Lys745_Glu746insValProValAlaIleLys	p.K745_E746insVPVAIK	ENST00000275493	NM_005228.3	740	att/aTTCCCGTCGCTATCAAGGtt																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0008652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	98	297	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66941796	66941796	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	63	457	0	ENST00000374690.3:c.2440T>G	p.Phe814Val	p.F814V	ENST00000374690	NM_000044.3	814	Ttc/Gtc																																																																														
APC	0	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	67	383	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	111	215	0	ENST00000269305.4:c.536A>C	p.His179Pro	p.H179P	ENST00000269305	NM_001126112.2	179	cAt/cCt																																																																														
JUN	0	MSKCC	GRCh37	1	59247985	59247986	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0008652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	64	365	0	ENST00000371222.2:c.756_757dup	p.Ile253ArgfsTer9	p.I253Rfs*9	ENST00000371222	NM_002228.3	253	atc/aGAtc																																																																														
AR	0	MSKCC	GRCh37	X	66863148	66863148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	38	361	0	ENST00000374690.3:c.1667C>A	p.Pro556His	p.P556H	ENST00000374690	NM_000044.3	556	cCc/cAc																																																																														
AR	0	MSKCC	GRCh37	X	66931251	66931251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	48	415	0	ENST00000374690.3:c.1893G>T	p.Lys631Asn	p.K631N	ENST00000374690	NM_000044.3	631	aaG/aaT																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	26	426	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	11	346	0	ENST00000342988.3:c.1156G>A	p.Gly386Ser	p.G386S	ENST00000342988	NM_005359.5	386	Ggt/Agt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120465373	120465373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	94	475	0	ENST00000256646.2:c.4888C>T	p.Arg1630Cys	p.R1630C	ENST00000256646	NM_024408.3	1630	Cgc/Tgc																																																																														
IRF4	0	MSKCC	GRCh37	6	395894	395894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1310	102	716	0	ENST00000380956.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000380956	NM_001195286.1	151	Ccc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	744	649	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112173831	112173831	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	345	384	0	ENST00000257430.4:c.2544del	p.Asp849IlefsTer12	p.D849Ifs*12	ENST00000257430	NM_000038.5	847	gAa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	466	364	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg																																																																														
RAD54L	0	MSKCC	GRCh37	1	46743931	46743931	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	371	344	0	ENST00000371975.4:c.2221G>T	p.Glu741Ter	p.E741*	ENST00000371975	NM_003579.3	741	Gag/Tag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212522516	212522516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	313	406	0	ENST00000342788.4:c.1909C>A	p.Pro637Thr	p.P637T	ENST00000342788	NM_005235.2	637	Cca/Aca																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259568	89259568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	236	257	0	ENST00000336596.2:c.712G>T	p.Asp238Tyr	p.D238Y	ENST00000336596	NM_005233.5	238	Gat/Tat																																																																														
INPP4B	0	MSKCC	GRCh37	4	143352393	143352393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	406	494	0	ENST00000262992.4:c.20G>T	p.Gly7Val	p.G7V	ENST00000262992	NM_001101669.1	7	gGg/gTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187627795	187627795	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	524	591	0	ENST00000441802.2:c.3187G>C	p.Ala1063Pro	p.A1063P	ENST00000441802	NM_005245.3	1063	Gcc/Ccc																																																																														
DAXX	0	MSKCC	GRCh37	6	33289211	33289211	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	338	302	0	ENST00000374542.5:c.341C>G	p.Ser114Cys	p.S114C	ENST00000374542	NM_001141970.1	114	tCt/tGt																																																																														
MET	0	MSKCC	GRCh37	7	116340120	116340120	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	305	334	0	ENST00000397752.3:c.982C>T	p.Gln328Ter	p.Q328*	ENST00000397752	NM_000245.2	328	Cag/Tag																																																																														
MLL3	0	MSKCC	GRCh37	7	151919103	151919103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	252	465	0	ENST00000262189.6:c.3482C>T	p.Thr1161Ile	p.T1161I	ENST00000262189	NM_170606.2	1161	aCa/aTa																																																																														
PAX5	0	MSKCC	GRCh37	9	36840625	36840625	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	382	377	0	ENST00000358127.4:c.1108T>A	p.Tyr370Asn	p.Y370N	ENST00000358127	NM_001280556.1	370	Tac/Aac																																																																														
PTCH1	0	MSKCC	GRCh37	9	98247991	98247991	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138034434		P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	83	367	2	ENST00000331920.6:c.560G>A	p.Arg187His	p.R187H	ENST00000331920	NM_000264.3	187	cGt/cAt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114903688	114903688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	1651	884	0	ENST00000543371.1:c.692C>T	p.Pro231Leu	p.P231L	ENST00000543371	NM_001198531.1	231	cCa/cTa																																																																														
POLE	0	MSKCC	GRCh37	12	133226335	133226335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	706	665	0	ENST00000320574.5:c.3723G>T	p.Glu1241Asp	p.E1241D	ENST00000320574	NM_006231.2	1241	gaG/gaT																																																																														
DICER1	0	MSKCC	GRCh37	14	95570044	95570044	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	472	604	0	ENST00000343455.3:c.3689A>T	p.Gln1230Leu	p.Q1230L	ENST00000343455	NM_177438.2	1230	cAg/cTg																																																																														
DICER1	0	MSKCC	GRCh37	14	95578509	95578509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	212	344	2	ENST00000343455.3:c.2116G>T	p.Gly706Cys	p.G706C	ENST00000343455	NM_177438.2	706	Ggc/Tgc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678515	88678515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	374	446	0	ENST00000360948.2:c.1021C>A	p.Pro341Thr	p.P341T	ENST00000360948	NM_001012338.2	341	Cct/Act																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992532	72992532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1543	1050	1174	0	ENST00000268489.5:c.1513G>T	p.Asp505Tyr	p.D505Y	ENST00000268489	NM_006885.3	505	Gac/Tac																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602667	10602667	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	524	447	1	ENST00000171111.5:c.911T>A	p.Ile304Asn	p.I304N	ENST00000171111	NM_203500.1	304	aTc/aAc																																																																														
JAK1	0	MSKCC	GRCh37	1	65312381	65312387	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGACC	GGAGACC	-			P-0008675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	58	362	0	ENST00000342505.4:c.1932_1938del	p.Gln644HisfsTer57	p.Q644Hfs*57	ENST00000342505	NM_002227.2	644	caGGTCTCC/ca																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0008685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1346	177	489	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578398	7578398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	91	243	0	ENST00000269305.4:c.532C>G	p.His178Asp	p.H178D	ENST00000269305	NM_001126112.2	178	Cac/Gac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	51	170	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	164	461	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	501	765	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
MTOR	0	MSKCC	GRCh37	1	11300374	11300374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	67	281	0	ENST00000361445.4:c.1772G>A	p.Ser591Asn	p.S591N	ENST00000361445	NM_004958.3	591	aGc/aAc																																																																														
MPL	0	MSKCC	GRCh37	1	43803818	43803818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147938568		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	225	707	0	ENST00000372470.3:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000372470	NM_005373.2	43	cGa/cAa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120466341	120466341	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	178	586	0	ENST00000256646.2:c.4778A>C	p.Tyr1593Ser	p.Y1593S	ENST00000256646	NM_024408.3	1593	tAt/tCt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120497816	120497816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	98	342	0	ENST00000256646.2:c.2066A>G	p.Asn689Ser	p.N689S	ENST00000256646	NM_024408.3	689	aAt/aGt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849863	156849863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	112	622	1	ENST00000524377.1:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000524377	NM_002529.3	707	Gag/Aag																																																																														
CDC73	0	MSKCC	GRCh37	1	193111021	193111021	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	43	423	0	ENST00000367435.3:c.554T>C	p.Ile185Thr	p.I185T	ENST00000367435	NM_024529.4	185	aTc/aCc																																																																														
ALK	0	MSKCC	GRCh37	2	30143010	30143010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	231	777	1	ENST00000389048.3:c.516G>T	p.Glu172Asp	p.E172D	ENST00000389048	NM_004304.4	172	gaG/gaT																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	350	547	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138433447	138433447	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	123	641	0	ENST00000289153.2:c.1165A>G	p.Ile389Val	p.I389V	ENST00000289153	NM_006219.2	389	Att/Gtt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	208	1092	2	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807506	1807506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	248	743	0	ENST00000260795.2:c.1675G>A	p.Ala559Thr	p.A559T	ENST00000260795		559	Gcc/Acc																																																																														
TET2	0	MSKCC	GRCh37	4	106157674	106157674	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	48	602	0	ENST00000380013.4:c.2575A>G	p.Thr859Ala	p.T859A	ENST00000380013	NM_001127208.2	859	Acc/Gcc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	145	656	1	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149499641	149499641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	129	666	0	ENST00000261799.4:c.2632A>G	p.Ser878Gly	p.S878G	ENST00000261799	NM_002609.3	878	Agc/Ggc																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910708	29910708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	243	739	0	ENST00000376809.5:c.248A>G	p.Tyr83Cys	p.Y83C	ENST00000376809	NM_002116.7	83	tAt/tGt																																																																														
PIM1	0	MSKCC	GRCh37	6	37141761	37141761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	197	614	1	ENST00000373509.5:c.836C>A	p.Pro279Gln	p.P279Q	ENST00000373509	NM_002648.3	279	cCa/cAa																																																																														
LATS1	0	MSKCC	GRCh37	6	150016221	150016221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	82	651	2	ENST00000253339.5:c.485G>A	p.Ser162Asn	p.S162N	ENST00000253339		162	aGc/aAc																																																																														
CARD11	0	MSKCC	GRCh37	7	2976804	2976804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	256	921	0	ENST00000396946.4:c.1208A>G	p.Tyr403Cys	p.Y403C	ENST00000396946	NM_032415.4	403	tAc/tGc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98238356	98238356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	147	516	2	ENST00000331920.6:c.1688C>T	p.Ala563Val	p.A563V	ENST00000331920	NM_000264.3	563	gCg/gTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	136	533	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925567	114925567	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1391	218	1115	1	ENST00000543371.1:c.1645G>T	p.Ala549Ser	p.A549S	ENST00000543371	NM_001198531.1	549	Gcc/Tcc																																																																														
ARID2	0	MSKCC	GRCh37	12	46246384	46246384	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	89	647	0	ENST00000334344.6:c.4478T>C	p.Val1493Ala	p.V1493A	ENST00000334344	NM_152641.2	1493	gTa/gCa																																																																														
IGF1	0	MSKCC	GRCh37	12	102811723	102811723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	204	891	0	ENST00000307046.8:c.461A>G	p.Lys154Arg	p.K154R	ENST00000307046	NM_001111285.1	154	aAg/aGg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112623	115112623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	33	352	0	ENST00000257566.3:c.1117G>A	p.Gly373Ser	p.G373S	ENST00000257566	NM_016569.3	373	Ggt/Agt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991727	72991727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	43	414	1	ENST00000268489.5:c.2318C>T	p.Ala773Val	p.A773V	ENST00000268489	NM_006885.3	773	gCg/gTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348800	89348800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1756	257	1489	3	ENST00000301030.4:c.4150G>A	p.Gly1384Ser	p.G1384S	ENST00000301030	NM_001256183.1	1384	Ggt/Agt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37864647	37864647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	237	719	1	ENST00000269571.5:c.299G>A	p.Arg100Gln	p.R100Q	ENST00000269571		100	cGg/cAg																																																																														
STAT3	0	MSKCC	GRCh37	17	40500444	40500444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	293	712	0	ENST00000264657.5:c.91C>T	p.Arg31Trp	p.R31W	ENST00000264657	NM_139276.2	31	Cgg/Tgg																																																																														
RAD51C	0	MSKCC	GRCh37	17	56811512	56811512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	81	620	0	ENST00000337432.4:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000337432	NM_058216.2	354	Gca/Aca																																																																														
RPTOR	0	MSKCC	GRCh37	17	78935253	78935253	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143802144		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	238	647	0	ENST00000306801.3:c.3665G>A	p.Arg1222His	p.R1222H	ENST00000306801	NM_020761.2	1222	cGt/cAt																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4101040	4101040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	116	329	0	ENST00000262948.5:c.682G>A	p.Val228Met	p.V228M	ENST00000262948	NM_030662.3	228	Gtg/Atg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170774	11170774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	109	577	0	ENST00000344626.4:c.4822C>T	p.Arg1608Trp	p.R1608W	ENST00000344626	NM_003072.3	1608	Cgg/Tgg																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792725	33792725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	199	126	1	ENST00000498907.2:c.596C>T	p.Ala199Val	p.A199V	ENST00000498907	NM_004364.3	199	gCg/gTg																																																																														
CIC	0	MSKCC	GRCh37	19	42798142	42798142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1467	117	696	0	ENST00000575354.2:c.4096C>T	p.Arg1366Trp	p.R1366W	ENST00000575354	NM_015125.3	1366	Cgg/Tgg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226124	53226124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	167	596	0	ENST00000375401.3:c.2725C>T	p.Arg909Trp	p.R909W	ENST00000375401	NM_004187.3	909	Cgg/Tgg																																																																														
ATRX	0	MSKCC	GRCh37	X	76944402	76944402	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	62	726	0	ENST00000373344.5:c.503T>G	p.Ile168Ser	p.I168S	ENST00000373344	NM_000489.3	168	aTt/aGt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845573	72845574	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1234	276	1068	2	ENST00000268489.5:c.3766dup	p.Leu1256ProfsTer25	p.L1256Pfs*25	ENST00000268489	NM_006885.3	1256	ctg/cCtg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29912302	29912303	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	46	515	0	ENST00000376809.5:c.922dup	p.Ile308AsnfsTer32	p.I308Nfs*32	ENST00000376809	NM_002116.7	307	-/A																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	59	264	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	585	895	10	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
PTCH1	0	MSKCC	GRCh37	9	98239971	98239971	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	46	214	0	ENST00000331920.6:c.1361del	p.Cys454PhefsTer2	p.C454Ffs*2	ENST00000331920	NM_000264.3	454	tGt/tt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	153	603	2	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	185	706	2	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	151	434	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	169	566	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	129	421	2	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	161	915	2	ENST00000344626.4:c.810delC	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643943	52643943	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	86	395	0	ENST00000394830.3:c.1953delA	p.Lys651AsnfsTer5	p.K651Nfs*5	ENST00000394830	NM_018313.4	651	aaA/aa																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405954	157405954	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	166	588	3	ENST00000346085.5:c.2201del	p.Gly734AlafsTer11	p.G734Afs*11	ENST00000346085	NM_020732.3	732	ccG/cc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	182	372	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
MLL3	0	MSKCC	GRCh37	7	151945474	151945474	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	178	332	0	ENST00000262189.6:c.2045C>G	p.Ser682Ter	p.S682*	ENST00000262189	NM_170606.2	682	tCa/tGa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	234	281	0	ENST00000371953.3:c.380G>A	p.Gly127Glu	p.G127E	ENST00000371953	NM_000314.4	127	gGa/gAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47084094	47084094	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	437	448	0	ENST00000409792.3:c.7195C>T	p.Arg2399Ter	p.R2399*	ENST00000409792	NM_014159.6	2399	Cga/Tga																																																																														
TRAF2	0	MSKCC	GRCh37	9	139815562	139815562	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1294	445	809	1	ENST00000247668.2:c.1033A>T	p.Met345Leu	p.M345L	ENST00000247668	NM_021138.3	345	Atg/Ttg																																																																														
ATM	0	MSKCC	GRCh37	11	108142099	108142099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	210	521	0	ENST00000278616.4:c.3043C>T	p.Gln1015Ter	p.Q1015*	ENST00000278616	NM_000051.3	1015	Caa/Taa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830911	72830911	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1655	531	1055	0	ENST00000268489.5:c.5670G>C	p.Gln1890His	p.Q1890H	ENST00000268489	NM_006885.3	1890	caG/caC																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0008786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	643	240	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
GATA2	0	MSKCC	GRCh37	3	128200749	128200749	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	755	246	0	ENST00000341105.2:c.1056T>A	p.Cys352Ter	p.C352*	ENST00000341105	NM_032638.4	352	tgT/tgA																																																																														
RB1	0	MSKCC	GRCh37	13	48916756	48916756	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	383	184	0	ENST00000267163.4:c.286A>T	p.Lys96Ter	p.K96*	ENST00000267163	NM_000321.2	96	Aag/Tag																																																																														
BBC3	0	MSKCC	GRCh37	19	47725119	47725119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	419	312	0	ENST00000449228.1:c.625C>T	p.His209Tyr	p.H209Y	ENST00000449228	NM_001127240.2	209	Cat/Tat																																																																														
MED12	0	MSKCC	GRCh37	X	70338668	70338668	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	1147	175	0	ENST00000374080.3:c.66del	p.Asp23MetfsTer14	p.D23Mfs*14	ENST00000374080		22	Ccc/cc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240017	53240017	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	53	369	1	ENST00000375401.3:c.1424A>T	p.Asn475Ile	p.N475I	ENST00000375401	NM_004187.3	475	aAc/aTc																																																																														
VHL	0	MSKCC	GRCh37	3	10183729	10183730	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	126	405	0	ENST00000256474.2:c.200dupA	p.Asn67LysfsTer65	p.N67Kfs*65	ENST00000256474	NM_000551.3	66	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	27	589	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
MET	0	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	149	267	0	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	87	384	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																																																														
MYD88	0	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	23	435	1	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527371	157527371	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	113	449	0	ENST00000346085.5:c.5096T>C	p.Met1699Thr	p.M1699T	ENST00000346085	NM_020732.3	1699	aTg/aCg																																																																														
HGF	0	MSKCC	GRCh37	7	81358978	81358978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	257	558	0	ENST00000222390.5:c.983G>T	p.Arg328Leu	p.R328L	ENST00000222390	NM_000601.4	328	cGt/cTt																																																																														
RB1	0	MSKCC	GRCh37	13	48939078	48939078	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	89	496	0	ENST00000267163.4:c.910G>T	p.Gly304Ter	p.G304*	ENST00000267163	NM_000321.2	304	Gga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	191	227	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
ERCC3	0	MSKCC	GRCh37	2	128051234	128051234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	293	433	0	ENST00000285398.2:c.89C>T	p.Pro30Leu	p.P30L	ENST00000285398	NM_000122.1	30	cCg/cTg																																																																														
IL7R	0	MSKCC	GRCh37	5	35874607	35874607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1346	462	527	0	ENST00000303115.3:c.763C>A	p.Leu255Met	p.L255M	ENST00000303115	NM_002185.3	255	Ctg/Atg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602923	10602923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	227	370	0	ENST00000171111.5:c.655G>C	p.Glu219Gln	p.E219Q	ENST00000171111	NM_203500.1	219	Gag/Cag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971139	21971150	+	inframe_deletion	In_Frame_Del	DEL	GGCGCAGTTGGG	GGCGCAGTTGGG	-			P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	167	148	0	ENST00000304494.5:c.208_219del	p.Pro70_Ala73del	p.P70_A73del	ENST00000304494	NM_000077.4	70	CCCAACTGCGCC/-																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971139	21971150	+	inframe_deletion	In_Frame_Del	DEL	GGCGCAGTTGGG	GGCGCAGTTGGG	-			P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	167	148	0	ENST00000304494.5:c.208_219del	p.Pro70_Ala73del	p.P70_A73del	ENST00000304494	NM_000077.4	70	CCCAACTGCGCC/-																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971139	21971150	+	inframe_deletion	In_Frame_Del	DEL	GGCGCAGTTGGG	GGCGCAGTTGGG	-			P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	167	148	0	ENST00000304494.5:c.208_219del	p.Pro70_Ala73del	p.P70_A73del	ENST00000304494	NM_000077.4	70	CCCAACTGCGCC/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578458	7578459	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	408	333	0	ENST00000269305.4:c.471_472insT	p.Arg158SerfsTer23	p.R158Sfs*23	ENST00000269305	NM_001126112.2	157	-/T																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0008867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	11	347	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	124	406	0	ENST00000256078.4:c.38_39delinsAA	p.Gly13Glu	p.G13E	ENST00000256078	NM_033360.2	13	gGC/gAA																																																																														
CENPA	0	MSKCC	GRCh37	2	27015689	27015689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	177	766	0	ENST00000335756.4:c.276G>T	p.Leu92Phe	p.L92F	ENST00000335756	NM_001809.3	92	ttG/ttT																																																																														
MST1R	0	MSKCC	GRCh37	3	49928020	49928020	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	176	635	0	ENST00000296474.3:c.3708G>C	p.Arg1236Ser	p.R1236S	ENST00000296474	NM_002447.2	1236	agG/agC																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138376626	138376626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	51	475	0	ENST00000289153.2:c.2848G>T	p.Gly950Cys	p.G950C	ENST00000289153	NM_006219.2	950	Ggc/Tgc																																																																														
IL7R	0	MSKCC	GRCh37	5	35876287	35876287	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	47	306	0	ENST00000303115.3:c.1079G>T	p.Ser360Ile	p.S360I	ENST00000303115	NM_002185.3	360	aGc/aTc																																																																														
HGF	0	MSKCC	GRCh37	7	81350090	81350090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	159	501	0	ENST00000222390.5:c.1242G>C	p.Met414Ile	p.M414I	ENST00000222390	NM_000601.4	414	atG/atC																																																																														
TET1	0	MSKCC	GRCh37	10	70333887	70333887	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	53	359	0	ENST00000373644.4:c.1792C>A	p.Gln598Lys	p.Q598K	ENST00000373644	NM_030625.2	598	Cag/Aag																																																																														
ATM	0	MSKCC	GRCh37	11	108158369	108158369	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	105	416	0	ENST00000278616.4:c.4036G>T	p.Glu1346Ter	p.E1346*	ENST00000278616	NM_000051.3	1346	Gag/Tag																																																																														
RBM10	0	MSKCC	GRCh37	X	47038774	47038774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	84	128	1	ENST00000329236.7:c.550G>T	p.Gly184Cys	p.G184C	ENST00000329236	NM_001204466.1	184	Ggt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	173	464	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0008911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	207	673	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																																																														
RET	0	MSKCC	GRCh37	10	43572717	43572717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	78	219	1	ENST00000355710.3:c.11C>T	p.Ala4Val	p.A4V	ENST00000355710	NM_020975.4	4	gCg/gTg																																																																														
MED12	0	MSKCC	GRCh37	X	70347217	70347217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	250	785	2	ENST00000374080.3:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000374080		961	Cgg/Tgg																																																																														
RNF43	0	MSKCC	GRCh37	17	56492716	56492716	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	127	685	0	ENST00000407977.2:c.223del	p.Ile75Ter	p.I75*	ENST00000407977		75	Ata/ta																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0008941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	210	249	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	333	542	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578500	7578500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	348	454	0	ENST00000269305.4:c.430del	p.Gln144SerfsTer26	p.Q144Sfs*26	ENST00000269305	NM_001126112.2	144	Cag/ag																																																																														
TBX3	0	MSKCC	GRCh37	12	115112442	115112442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	47	302	0	ENST00000257566.3:c.1298C>G	p.Pro433Arg	p.P433R	ENST00000257566	NM_016569.3	433	cCc/cGc																																																																														
SRSF2	0	MSKCC	GRCh37	17	74733086	74733086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	228	556	0	ENST00000359995.5:c.157G>A	p.Glu53Lys	p.E53K	ENST00000359995	NM_001195427.1	53	Gag/Aag																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245842	41245849	+	frameshift_variant	Frame_Shift_Del	DEL	TTAGGATT	TTAGGATT	-			P-0008941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	343	496	0	ENST00000357654.3:c.1699_1706del	p.Asn567ProfsTer16	p.N567Pfs*16	ENST00000357654	NM_007294.3	567	AATCCTAAc/c																																																																														
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	202	377	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66231696	66231696	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	138	573	0	ENST00000273854.3:c.2004G>C	p.Lys668Asn	p.K668N	ENST00000273854	NM_004439.5	668	aaG/aaC																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244194	153244194	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	367	585	1	ENST00000281708.4:c.1963G>T	p.Glu655Ter	p.E655*	ENST00000281708	NM_033632.3	655	Gaa/Taa																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041717	14041717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	131	556	0	ENST00000311895.7:c.2264C>T	p.Pro755Leu	p.P755L	ENST00000311895	NM_005236.2	755	cCc/cTc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602878	10602878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	142	413	0	ENST00000171111.5:c.700C>T	p.Arg234Trp	p.R234W	ENST00000171111	NM_203500.1	234	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	271	358	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52595933	52595933	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	423	505	0	ENST00000394830.3:c.3982A>T	p.Lys1328Ter	p.K1328*	ENST00000394830	NM_018313.4	1328	Aaa/Taa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44923032	44923032	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	241	433	0	ENST00000377967.4:c.1893del	p.Trp632GlyfsTer59	p.W632Gfs*59	ENST00000377967	NM_021140.2	631	ccG/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0009002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	126	639	1	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
RAD54L	0	MSKCC	GRCh37	1	46714233	46714233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	120	601	1	ENST00000371975.4:c.53G>T	p.Arg18Met	p.R18M	ENST00000371975	NM_003579.3	18	aGg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	579	210	0				ENST00000310581	NM_198253.2																																																																																
DOT1L	0	MSKCC	GRCh37	19	2193750	2193750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	219	469	0	ENST00000398665.3:c.556G>A	p.Glu186Lys	p.E186K	ENST00000398665	NM_032482.2	186	Gag/Aag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138480	11138480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	214	375	0	ENST00000344626.4:c.3236C>T	p.Ser1079Leu	p.S1079L	ENST00000344626	NM_003072.3	1079	tCg/tTg																																																																														
MSH6	0	MSKCC	GRCh37	2	48027189	48027189	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	225	440	0	ENST00000234420.5:c.2067C>G	p.Phe689Leu	p.F689L	ENST00000234420	NM_000179.2	689	ttC/ttG																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55141041	55141041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	214	472	2	ENST00000257290.5:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000257290	NM_006206.4	563	Gaa/Aaa																																																																														
KDR	0	MSKCC	GRCh37	4	55971100	55971100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	200	384	0	ENST00000263923.4:c.1697G>A	p.Ser566Asn	p.S566N	ENST00000263923	NM_002253.2	566	aGc/aAc																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137524717	137524717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	250	440	0	ENST00000367739.4:c.652G>A	p.Glu218Lys	p.E218K	ENST00000367739	NM_000416.2	218	Gaa/Aaa																																																																														
MLL3	0	MSKCC	GRCh37	7	151878586	151878586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	173	345	1	ENST00000262189.6:c.6359G>T	p.Gly2120Val	p.G2120V	ENST00000262189	NM_170606.2	2120	gGa/gTa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346457	89346457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	280	582	0	ENST00000301030.4:c.6493G>C	p.Glu2165Gln	p.E2165Q	ENST00000301030	NM_001256183.1	2165	Gag/Cag																																																																														
RBM10	0	MSKCC	GRCh37	X	47039666	47039666	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	454	259	0	ENST00000329236.7:c.884A>C	p.Asp295Ala	p.D295A	ENST00000329236	NM_001204466.1	295	gAc/gCc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106469	27106480	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACTAACTT	CACCACTAACTT	AA			P-0009005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	254	382	1	ENST00000324856.7:c.6080_6091delinsAA	p.Ala2027GlufsTer12	p.A2027Efs*12	ENST00000324856	NM_006015.4	2027	gCACCACTAACTTat/gAAat																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14629025	14629026	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0009005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	216	412	1	ENST00000254322.2:c.136_137inv	p.Lys46Leu	p.K46L	ENST00000254322	NM_006145.1	46	AAg/TTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	241	327	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	127	305	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
EPHA5	0	MSKCC	GRCh37	4	66535441	66535441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	62	150	2	ENST00000273854.3:c.20G>A	p.Arg7Gln	p.R7Q	ENST00000273854	NM_004439.5	7	cGg/cAg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401004	139401004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	45	325	1	ENST00000277541.6:c.3989G>A	p.Arg1330His	p.R1330H	ENST00000277541	NM_017617.3	1330	cGc/cAc																																																																														
KDM5A	0	MSKCC	GRCh37	12	465607	465607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	246	438	0	ENST00000399788.2:c.769G>A	p.Asp257Asn	p.D257N	ENST00000399788	NM_001042603.1	257	Gat/Aat																																																																														
BRCA2	0	MSKCC	GRCh37	13	32890665	32890665	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	62	254	0	ENST00000380152.3:c.67+1G>T		p.X23_splice	ENST00000380152		23																																																																															
APC	0	MSKCC	GRCh37	5	112173756	112173756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	107	343	0	ENST00000257430.4:c.2467del	p.Ser823HisfsTer4	p.S823Hfs*4	ENST00000257430	NM_000038.5	822	cTt/ct																																																																														
APC	0	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	125	239	0	ENST00000257430.4:c.4463dup	p.Leu1488PhefsTer26	p.L1488Ffs*26	ENST00000257430	NM_000038.5	1487	act/acTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	695	417	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	568	542	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	226	355	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	334	363	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	286	364	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41277275	41277275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	196	422	0	ENST00000349496.5:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000349496	NM_001904.3	582	Cgg/Tgg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967853	93967853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	64	816	4	ENST00000369303.4:c.2074C>A	p.Pro692Thr	p.P692T	ENST00000369303	NM_004440.3	692	Ccg/Acg																																																																														
FGFR1	0	MSKCC	GRCh37	8	38287320	38287320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	416	470	1	ENST00000425967.3:c.337C>T	p.Arg113Cys	p.R113C	ENST00000425967	NM_001174067.1	113	Cgc/Tgc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67569236	67569247	+	inframe_deletion	In_Frame_Del	DEL	TTGCAGAGCAGT	TTGCAGAGCAGT	-			P-0009058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	194	481	0	ENST00000274335.5:c.357_368del	p.Glu120_Ala123del	p.E120_A123del	ENST00000274335		118	cTTGCAGAGCAGTtt/ctt																																																																														
TRAF7	0	MSKCC	GRCh37	16	2225940	2225940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	30	334	1	ENST00000326181.6:c.1732G>A	p.Glu578Lys	p.E578K	ENST00000326181	NM_032271.2	578	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	93	489	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100177	157100177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	32	91	2	ENST00000346085.5:c.1114C>T	p.Arg372Trp	p.R372W	ENST00000346085	NM_020732.3	372	Cgg/Tgg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99434752	99434752	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	232	381	0	ENST00000268035.6:c.839A>T	p.Asp280Val	p.D280V	ENST00000268035	NM_000875.3	280	gAc/gTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11134267	11134267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	112	394	1	ENST00000344626.4:c.2933G>A	p.Arg978Gln	p.R978Q	ENST00000344626	NM_003072.3	978	cGa/cAa																																																																														
TOP1	0	MSKCC	GRCh37	20	39657718	39657720	+	inframe_deletion	In_Frame_Del	DEL	ACC	ACC	-			P-0009088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	74	354	0	ENST00000361337.2:c.14_16delACC	p.His5del	p.H5del	ENST00000361337	NM_003286.2	4	gACCac/gac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	174	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	188	387	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
MITF	0	MSKCC	GRCh37	3	69928323	69928323	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	61	349	0	ENST00000352241.4:c.143T>C	p.Ile48Thr	p.I48T	ENST00000352241	NM_198159.2	48	aTa/aCa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101125	41101125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	29	304	0	ENST00000373198.4:c.1231G>A	p.Gly411Ser	p.G411S	ENST00000373198	NM_133170.3	411	Ggc/Agc																																																																														
ATRX	0	MSKCC	GRCh37	X	76938758	76938758	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	58	550	0	ENST00000373344.5:c.1990T>G	p.Leu664Val	p.L664V	ENST00000373344	NM_000489.3	664	Ttg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	67	417	8	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0009109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	59	420	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ATM	0	MSKCC	GRCh37	11	108183157	108183157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	45	519	0	ENST00000278616.4:c.5938G>A	p.Gly1980Arg	p.G1980R	ENST00000278616	NM_000051.3	1980	Gga/Aga																																																																														
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	93	524	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
APC	0	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	81	626	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa																																																																														
TERT	0	MSKCC	GRCh37	5	1279464	1279464	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202123213		P-0009139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	38	457	0	ENST00000310581.5:c.2072G>A	p.Arg691His	p.R691H	ENST00000310581	NM_198253.2	691	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	205	447	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	384	410	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	137	238	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
APC	0	MSKCC	GRCh37	5	112155031	112155032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	159	373	0	ENST00000257430.4:c.1307dup	p.Asn436LysfsTer8	p.N436Kfs*8	ENST00000257430	NM_000038.5	434	-/A																																																																														
HGF	0	MSKCC	GRCh37	7	81372752	81372752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	162	417	0	ENST00000222390.5:c.782G>A	p.Arg261His	p.R261H	ENST00000222390	NM_000601.4	261	cGc/cAc																																																																														
MGA	0	MSKCC	GRCh37	15	41991306	41991306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	298	794	0	ENST00000219905.7:c.2137G>C	p.Asp713His	p.D713H	ENST00000219905	NM_001164273.1	713	Gat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7579583	7579583	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	244	292	0	ENST00000269305.4:c.104T>A	p.Leu35Ter	p.L35*	ENST00000269305	NM_001126112.2	35	tTg/tAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	314	400	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
APC	0	MSKCC	GRCh37	5	112175521	112175521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	135	467	0	ENST00000257430.4:c.4230C>A	p.Cys1410Ter	p.C1410*	ENST00000257430	NM_000038.5	1410	tgC/tgA																																																																														
ROS1	0	MSKCC	GRCh37	6	117687425	117687425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	94	459	0	ENST00000368508.3:c.2626G>A	p.Ala876Thr	p.A876T	ENST00000368508	NM_002944.2	876	Gca/Aca																																																																														
MLL2	0	MSKCC	GRCh37	12	49432033	49432033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	109	715	0	ENST00000301067.7:c.9106C>T	p.Pro3036Ser	p.P3036S	ENST00000301067	NM_003482.3	3036	Ccc/Tcc																																																																														
MLL2	0	MSKCC	GRCh37	12	49443478	49443478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	175	403	0	ENST00000301067.7:c.3893C>A	p.Ser1298Tyr	p.S1298Y	ENST00000301067	NM_003482.3	1298	tCc/tAc																																																																														
FLT1	0	MSKCC	GRCh37	13	28964099	28964099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	141	626	1	ENST00000282397.4:c.1803C>A	p.His601Gln	p.H601Q	ENST00000282397	NM_002019.4	601	caC/caA																																																																														
APC	0	MSKCC	GRCh37	5	112116534	112116534	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	173	597	0	ENST00000257430.4:c.580del	p.Arg194GlyfsTer11	p.R194Gfs*11	ENST00000257430	NM_000038.5	193	gcA/gc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	428	779	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	159	480	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																																																														
CUL3	0	MSKCC	GRCh37	2	225378266	225378266	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	255	724	0	ENST00000264414.4:c.629delT	p.Leu210TrpfsTer16	p.L210Wfs*16	ENST00000264414	NM_003590.4	210	tTg/tg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	54	661	1	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
NSD1	0	MSKCC	GRCh37	5	176696691	176696691	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	227	658	0	ENST00000439151.2:c.5397delT	p.Phe1799LeufsTer22	p.F1799Lfs*22	ENST00000439151	NM_022455.4	1798	Ttt/tt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	76	121	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																														
TERT	7015	MSKCC	GRCh37	5	1294665	1294665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	36	106	0	ENST00000310581.5:c.336del	p.Glu113ArgfsTer15	p.E113Rfs*15	ENST00000310581	NM_198253.2	112	ccC/cc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	240	570	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
NTRK1	0	MSKCC	GRCh37	1	156845901	156845901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	464	908	0	ENST00000524377.1:c.1531G>A	p.Val511Met	p.V511M	ENST00000524377	NM_002529.3	511	Gtg/Atg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3832688	3832688	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	301	558	0	ENST00000262367.5:c.1570delC	p.Leu524TrpfsTer6	p.L524Wfs*6	ENST00000262367	NM_004380.2	524	Ctg/tg																																																																														
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	355	373	0	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																														
RAD50	0	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	224	635	7	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	167	491	1	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
CIC	0	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	507	961	0	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																														
HIST1H1C	3006	MSKCC	GRCh37	6	26056425	26056427	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs774779034		P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	160	324	0	ENST00000343677.2:c.230_232del	p.Asn77del	p.N77del	ENST00000343677	NM_005319.3	77	aACAgc/agc																																																																														
MLL2	0	MSKCC	GRCh37	12	49436599	49436599	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	375	704	2	ENST00000301067.7:c.5707C>T	p.Arg1903Ter	p.R1903*	ENST00000301067	NM_003482.3	1903	Cga/Tga																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	507	825	11	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	214	398	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602281	10602281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	273	471	5	ENST00000171111.5:c.1297G>A	p.Gly433Ser	p.G433S	ENST00000171111	NM_203500.1	433	Ggc/Agc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	359	725	0	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																														
DIS3	0	MSKCC	GRCh37	13	73337684	73337684	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	304	627	5	ENST00000377767.4:c.2032delA	p.Ile678PhefsTer59	p.I678Ffs*59	ENST00000377767	NM_014953.3	678	Att/tt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100307	27100307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	381	734	1	ENST00000324856.7:c.4019G>A	p.Gly1340Asp	p.G1340D	ENST00000324856	NM_006015.4	1340	gGc/gAc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45797926	45797926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	412	734	1	ENST00000372115.3:c.803C>T	p.Ala268Val	p.A268V	ENST00000372115	NM_001048171.1	268	gCc/gTc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966231	25966231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	363	665	1	ENST00000435504.4:c.2975C>T	p.Ala992Val	p.A992V	ENST00000435504		992	gCg/gTg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25972669	25972669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	420	742	1	ENST00000435504.4:c.1756C>T	p.Arg586Cys	p.R586C	ENST00000435504		586	Cgt/Tgt																																																																														
EPCAM	0	MSKCC	GRCh37	2	47600656	47600656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	371	855	0	ENST00000263735.4:c.131G>A	p.Arg44His	p.R44H	ENST00000263735	NM_002354.2	44	cGt/cAt																																																																														
MSH6	0	MSKCC	GRCh37	2	48030612	48030612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	415	905	0	ENST00000234420.5:c.3226C>T	p.Arg1076Cys	p.R1076C	ENST00000234420	NM_000179.2	1076	Cgc/Tgc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66535336	66535336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	335	630	1	ENST00000273854.3:c.125C>T	p.Thr42Met	p.T42M	ENST00000273854	NM_004439.5	42	aCg/aTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187630165	187630165	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	269	450	0	ENST00000441802.2:c.817T>C	p.Tyr273His	p.Y273H	ENST00000441802	NM_005245.3	273	Tat/Cat																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111833	56111833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			11	11	20	0	ENST00000399503.3:c.433G>A	p.Glu145Lys	p.E145K	ENST00000399503	NM_005921.1	145	Gag/Aag																																																																														
MLL3	0	MSKCC	GRCh37	7	152012397	152012397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	239	616	0	ENST00000262189.6:c.416G>A	p.Cys139Tyr	p.C139Y	ENST00000262189	NM_170606.2	139	tGt/tAt																																																																														
FGFR1	0	MSKCC	GRCh37	8	38283760	38283760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	319	547	0	ENST00000425967.3:c.718C>T	p.Arg240Cys	p.R240C	ENST00000425967	NM_001174067.1	240	Cgt/Tgt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971154	21971154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	71	110	0	ENST00000361570.3:c.370G>A	p.Gly124Arg	p.G124R	ENST00000361570	NM_058195.3	124	Gga/Aga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971154	21971154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	71	110	0	ENST00000361570.3:c.370G>A	p.Gly124Arg	p.G124R	ENST00000361570	NM_058195.3	124	Gga/Aga																																																																														
GNAQ	0	MSKCC	GRCh37	9	80537144	80537144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	148	444	1	ENST00000286548.4:c.254C>T	p.Thr85Met	p.T85M	ENST00000286548	NM_002072.3	85	aCg/aTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396761	139396761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	252	438	3	ENST00000277541.6:c.5347C>T	p.Arg1783Trp	p.R1783W	ENST00000277541	NM_017617.3	1783	Cgg/Tgg																																																																														
RAD52	0	MSKCC	GRCh37	12	1025901	1025901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	481	858	0	ENST00000358495.3:c.629C>T	p.Pro210Leu	p.P210L	ENST00000358495	NM_134424.2	210	cCg/cTg																																																																														
MLL2	0	MSKCC	GRCh37	12	49431178	49431178	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	326	597	3	ENST00000301067.7:c.9961C>T	p.Arg3321Ter	p.R3321*	ENST00000301067	NM_003482.3	3321	Cga/Tga																																																																														
POLE	0	MSKCC	GRCh37	12	133218299	133218299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	362	626	1	ENST00000320574.5:c.5312C>T	p.Thr1771Met	p.T1771M	ENST00000320574	NM_006231.2	1771	aCg/aTg																																																																														
FLT3	0	MSKCC	GRCh37	13	28610163	28610163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	249	653	0	ENST00000241453.7:c.1327G>A	p.Ala443Thr	p.A443T	ENST00000241453	NM_004119.2	443	Gca/Aca																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472603	88472603	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	302	574	0	ENST00000360948.2:c.1952T>G	p.Leu651Arg	p.L651R	ENST00000360948	NM_001012338.2	651	cTg/cGg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99500390	99500390	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143286842		P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	91	725	0	ENST00000268035.6:c.3823C>T	p.Arg1275Trp	p.R1275W	ENST00000268035	NM_000875.3	1275	Cgg/Tgg																																																																														
AXIN1	0	MSKCC	GRCh37	16	338194	338194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	543	831	0	ENST00000262320.3:c.2517G>T	p.Glu839Asp	p.E839D	ENST00000262320	NM_003502.3	839	gaG/gaT																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934800	9934800	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	381	916	0	ENST00000330684.3:c.1490T>G	p.Ile497Ser	p.I497S	ENST00000330684	NM_001134407.1	497	aTc/aGc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993162	72993162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1196	632	1125	2	ENST00000268489.5:c.883C>T	p.Arg295Cys	p.R295C	ENST00000268489	NM_006885.3	295	Cgt/Tgt																																																																														
STAT5B	0	MSKCC	GRCh37	17	40364067	40364067	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	81	107	0	ENST00000293328.3:c.1615A>G	p.Asn539Asp	p.N539D	ENST00000293328	NM_012448.3	539	Aac/Gac																																																																														
RNF43	0	MSKCC	GRCh37	17	56435971	56435971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	173	332	0	ENST00000407977.2:c.1166G>A	p.Arg389His	p.R389H	ENST00000407977		389	cGc/cAc																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66526085	66526085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	267	494	0	ENST00000358598.2:c.916C>T	p.Arg306Trp	p.R306W	ENST00000358598	NM_212471.2	306	Cgg/Tgg																																																																														
SOX9	0	MSKCC	GRCh37	17	70120245	70120245	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	470	867	0	ENST00000245479.2:c.1247A>C	p.Gln416Pro	p.Q416P	ENST00000245479	NM_000346.3	416	cAa/cCa																																																																														
DNMT1	0	MSKCC	GRCh37	19	10265583	10265583	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	291	566	0	ENST00000340748.4:c.1594G>A	p.Glu532Lys	p.E532K	ENST00000340748		532	Gag/Aag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11121091	11121091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	378	733	0	ENST00000344626.4:c.2158G>A	p.Val720Met	p.V720M	ENST00000344626	NM_003072.3	720	Gtg/Atg																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627685	14627685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	478	929	0	ENST00000254322.2:c.385G>A	p.Asp129Asn	p.D129N	ENST00000254322	NM_006145.1	129	Gac/Aac																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281175	15281175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	458	761	0	ENST00000263388.2:c.5081G>A	p.Arg1694Gln	p.R1694Q	ENST00000263388	NM_000435.2	1694	cGg/cAg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15303224	15303224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	359	671	1	ENST00000263388.2:c.304G>A	p.Ala102Thr	p.A102T	ENST00000263388	NM_000435.2	102	Gcc/Acc																																																																														
POLD1	0	MSKCC	GRCh37	19	50909698	50909698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	503	820	0	ENST00000440232.2:c.1418C>T	p.Thr473Met	p.T473M	ENST00000440232	NM_002691.3	473	aCg/aTg																																																																														
ERG	0	MSKCC	GRCh37	21	39755585	39755585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	351	612	1	ENST00000288319.7:c.1180G>A	p.Gly394Arg	p.G394R	ENST00000288319	NM_182918.3	394	Ggg/Agg																																																																														
U2AF1	0	MSKCC	GRCh37	21	44513259	44513259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	163	259	0	ENST00000291552.4:c.676C>T	p.Arg226Cys	p.R226C	ENST00000291552	NM_006758.2	226	Cgt/Tgt																																																																														
BCOR	0	MSKCC	GRCh37	X	39932255	39932255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	524	529	0	ENST00000378444.4:c.2344G>A	p.Asp782Asn	p.D782N	ENST00000378444	NM_001123385.1	782	Gac/Aac																																																																														
AMER1	0	MSKCC	GRCh37	X	63411480	63411480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	469	507	0	ENST00000330258.3:c.1687A>G	p.Thr563Ala	p.T563A	ENST00000330258	NM_152424.3	563	Acc/Gcc																																																																														
ATRX	0	MSKCC	GRCh37	X	76919038	76919038	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	313	269	1	ENST00000373344.5:c.3953delA	p.Asn1318IlefsTer28	p.N1318Ifs*28	ENST00000373344	NM_000489.3	1318	aAt/at																																																																														
LATS1	0	MSKCC	GRCh37	6	149997825	149997826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	76	534	0	ENST00000253339.5:c.2641dup	p.Asp881GlyfsTer40	p.D881Gfs*40	ENST00000253339		881	gat/gGat																																																																														
MSH2	0	MSKCC	GRCh37	2	47657031	47657031	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	327	707	0	ENST00000233146.2:c.1229del	p.Gly410ValfsTer2	p.G410Vfs*2	ENST00000233146	NM_000251.2	409	caG/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	299	477	0	ENST00000269305.4:c.614A>C	p.Tyr205Ser	p.Y205S	ENST00000269305	NM_001126112.2	205	tAt/tCt																																																																														
EP300	0	MSKCC	GRCh37	22	41573782	41573782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	153	450	0	ENST00000263253.7:c.6067C>T	p.Gln2023Ter	p.Q2023*	ENST00000263253	NM_001429.3	2023	Caa/Taa																																																																														
BTK	0	MSKCC	GRCh37	X	100625055	100625055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	76	451	2	ENST00000308731.7:c.322G>A	p.Glu108Lys	p.E108K	ENST00000308731	NM_000061.2	108	Gaa/Aaa																																																																														
FUBP1	0	MSKCC	GRCh37	1	78433879	78433879	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	111	392	0	ENST00000370768.2:c.220G>C	p.Asp74His	p.D74H	ENST00000370768	NM_003902.3	74	Gat/Cat																																																																														
SPEN	0	MSKCC	GRCh37	1	16258374	16258374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	194	450	0	ENST00000375759.3:c.5639C>G	p.Ser1880Cys	p.S1880C	ENST00000375759	NM_015001.2	1880	tCt/tGt																																																																														
JUN	0	MSKCC	GRCh37	1	59247963	59247963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	173	380	0	ENST00000371222.2:c.780G>A	p.Met260Ile	p.M260I	ENST00000371222	NM_002228.3	260	atG/atA																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699405	117699405	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	146	419	0	ENST00000369458.3:c.236T>A	p.Leu79Ter	p.L79*	ENST00000369458	NM_024626.3	79	tTg/tAg																																																																														
TMEM127	0	MSKCC	GRCh37	2	96919801	96919801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	66	323	0	ENST00000258439.3:c.462C>G	p.Ile154Met	p.I154M	ENST00000258439	NM_001193304.2	154	atC/atG																																																																														
EED	0	MSKCC	GRCh37	11	85975233	85975233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	54	347	0	ENST00000263360.6:c.654G>C	p.Trp218Cys	p.W218C	ENST00000263360	NM_003797.3	218	tgG/tgC																																																																														
MLL2	0	MSKCC	GRCh37	12	49432359	49432359	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	121	410	0	ENST00000301067.7:c.8780C>G	p.Ser2927Ter	p.S2927*	ENST00000301067	NM_003482.3	2927	tCa/tGa																																																																														
CDK12	0	MSKCC	GRCh37	17	37618841	37618841	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	116	405	0	ENST00000447079.4:c.517G>T	p.Glu173Ter	p.E173*	ENST00000447079	NM_015083.1	173	Gaa/Taa																																																																														
AXL	0	MSKCC	GRCh37	19	41726726	41726726	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	136	386	0	ENST00000301178.4:c.271G>C	p.Asp91His	p.D91H	ENST00000301178	NM_021913.4	91	Gat/Cat																																																																														
PTPRT	0	MSKCC	GRCh37	20	40979322	40979322	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	102	314	0	ENST00000373198.4:c.1811A>T	p.Asp604Val	p.D604V	ENST00000373198	NM_133170.3	604	gAc/gTc																																																																														
CRKL	0	MSKCC	GRCh37	22	21272519	21272519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	140	407	0	ENST00000354336.3:c.297C>G	p.Ile99Met	p.I99M	ENST00000354336	NM_005207.3	99	atC/atG																																																																														
STK11	0	MSKCC	GRCh37	19	1206979	1206988	+	frameshift_variant	Frame_Shift_Del	DEL	GACACGTTCA	GACACGTTCA	-			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	65	257	0	ENST00000326873.7:c.67_76del	p.Asp23SerfsTer25	p.D23Sfs*25	ENST00000326873	NM_000455.4	23	GACACGTTCAtc/tc																																																																														
STK11	0	MSKCC	GRCh37	19	1206973	1206975	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-			P-0009162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	62	255	0	ENST00000326873.7:c.61_63del	p.Gly21del	p.G21del	ENST00000326873	NM_000455.4	21	GGT/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	160	355	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	343	362	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
RNF43	0	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	409	356	2	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																																																														
FLT1	0	MSKCC	GRCh37	13	29012465	29012465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	159	288	0	ENST00000282397.4:c.406G>A	p.Val136Ile	p.V136I	ENST00000282397	NM_002019.4	136	Gta/Ata																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114917829	114917830	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0009169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	394	468	0	ENST00000543371.1:c.1318+2dup		p.X440_splice	ENST00000543371	NM_001198531.1	440																																																																															
KRAS	0	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0009179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	76	438	0	ENST00000256078.4:c.38_39delinsTT	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGC/gTT																																																																														
CDK12	0	MSKCC	GRCh37	17	37667792	37667795	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0009179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	64	585	0	ENST00000447079.4:c.2682_2685delCAAA	p.Asn894LysfsTer14	p.N894Kfs*14	ENST00000447079	NM_015083.1	893	ACAAac/ac																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	211	448	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0009185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	224	429	1	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
PIK3CG	0	MSKCC	GRCh37	7	106508843	106508843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	246	377	0	ENST00000359195.3:c.837G>T	p.Glu279Asp	p.E279D	ENST00000359195	NM_002649.2	279	gaG/gaT																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741886	17741886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	36	61	0	ENST00000250003.3:c.557C>T	p.Pro186Leu	p.P186L	ENST00000250003	NM_002478.4	186	cCg/cTg																																																																														
APC	0	MSKCC	GRCh37	5	112175283	112175284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	172	400	0	ENST00000257430.4:c.3994dupA	p.Thr1332AsnfsTer10	p.T1332Nfs*10	ENST00000257430	NM_000038.5	1331	aga/agAa																																																																														
TP63	0	MSKCC	GRCh37	3	189604245	189604245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	118	536	2	ENST00000264731.3:c.1412G>A	p.Ser471Asn	p.S471N	ENST00000264731	NM_003722.4	471	aGc/aAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	628	296	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0009200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	888	268	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	302	294	1	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																														
SETD2	0	MSKCC	GRCh37	3	47098657	47098657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	290	289	0	ENST00000409792.3:c.6617C>T	p.Ala2206Val	p.A2206V	ENST00000409792	NM_014159.6	2206	gCt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	267	1018	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176524321	176524321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	104	764	0	ENST00000292408.4:c.2182G>A	p.Ala728Thr	p.A728T	ENST00000292408	NM_213647.1	728	Gca/Aca																																																																														
PARP1	0	MSKCC	GRCh37	1	226564873	226564873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	207	945	1	ENST00000366794.5:c.1877G>T	p.Trp626Leu	p.W626L	ENST00000366794	NM_001618.3	626	tGg/tTg																																																																														
MSH2	0	MSKCC	GRCh37	2	47672693	47672693	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	172	766	0	ENST00000233146.2:c.1283A>T	p.His428Leu	p.H428L	ENST00000233146	NM_000251.2	428	cAc/cTc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198288604	198288604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	98	1051	0	ENST00000335508.6:c.123G>T	p.Gln41His	p.Q41H	ENST00000335508	NM_012433.2	41	caG/caT																																																																														
MITF	0	MSKCC	GRCh37	3	70014208	70014208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1595	407	1301	0	ENST00000352241.4:c.1372G>T	p.Gly458Trp	p.G458W	ENST00000352241	NM_198159.2	458	Ggg/Tgg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89156957	89156957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	204	728	1	ENST00000336596.2:c.59G>T	p.Gly20Val	p.G20V	ENST00000336596	NM_005233.5	20	gGg/gTg																																																																														
GATA2	0	MSKCC	GRCh37	3	128204941	128204941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	203	966	0	ENST00000341105.2:c.500G>C	p.Gly167Ala	p.G167A	ENST00000341105	NM_032638.4	167	gGc/gCc																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664718	138664718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	39	152	0	ENST00000330315.3:c.847G>T	p.Ala283Ser	p.A283S	ENST00000330315	NM_023067.3	283	Gca/Tca																																																																														
EIF4E	0	MSKCC	GRCh37	4	99823049	99823049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	84	649	0	ENST00000280892.6:c.163A>G	p.Ile55Val	p.I55V	ENST00000280892	NM_001130678.1	55	Att/Gtt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143081621	143081621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	79	742	0	ENST00000262992.4:c.1453C>A	p.Pro485Thr	p.P485T	ENST00000262992	NM_001101669.1	485	Cca/Aca																																																																														
SDHA	0	MSKCC	GRCh37	5	236597	236597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	75	263	0	ENST00000264932.6:c.1315G>T	p.Gly439Trp	p.G439W	ENST00000264932	NM_004168.2	439	Ggg/Tgg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38964909	38964909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	91	468	0	ENST00000357387.3:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000357387	NM_152756.3	462	cCc/cTc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520545	176520545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	88	626	0	ENST00000292408.4:c.1390C>T	p.Arg464Trp	p.R464W	ENST00000292408	NM_213647.1	464	Cgg/Tgg																																																																														
IRF4	0	MSKCC	GRCh37	6	395873	395873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	114	877	0	ENST00000380956.4:c.430C>A	p.Pro144Thr	p.P144T	ENST00000380956	NM_001195286.1	144	Ccg/Acg																																																																														
IRF4	0	MSKCC	GRCh37	6	395895	395895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	120	837	0	ENST00000380956.4:c.452C>T	p.Pro151Leu	p.P151L	ENST00000380956	NM_001195286.1	151	cCc/cTc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163564	32163564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	171	626	1	ENST00000375023.3:c.5662G>T	p.Ala1888Ser	p.A1888S	ENST00000375023	NM_004557.3	1888	Gcg/Tcg																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652242	36652242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	88	545	0	ENST00000244741.5:c.364C>T	p.Arg122Cys	p.R122C	ENST00000244741	NM_000389.4	122	Cgc/Tgc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93969075	93969075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	81	873	0	ENST00000369303.4:c.1921G>T	p.Ala641Ser	p.A641S	ENST00000369303	NM_004440.3	641	Gca/Tca																																																																														
ARID1B	0	MSKCC	GRCh37	6	157222598	157222598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	181	677	2	ENST00000346085.5:c.1865A>G	p.His622Arg	p.H622R	ENST00000346085	NM_020732.3	622	cAc/cGc																																																																														
CARD11	0	MSKCC	GRCh37	7	2984013	2984013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	351	960	0	ENST00000396946.4:c.517C>A	p.Leu173Met	p.L173M	ENST00000396946	NM_032415.4	173	Ctg/Atg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8504324	8504324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	270	742	1	ENST00000356435.5:c.1759G>T	p.Ala587Ser	p.A587S	ENST00000356435		587	Gca/Tca																																																																														
CCND1	0	MSKCC	GRCh37	11	69457799	69457799	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	155	600	0	ENST00000227507.2:c.199G>C	p.Val67Leu	p.V67L	ENST00000227507	NM_053056.2	67	Gtc/Ctc																																																																														
PGR	0	MSKCC	GRCh37	11	100999641	100999641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	285	1275	0	ENST00000325455.5:c.161C>T	p.Ser54Phe	p.S54F	ENST00000325455	NM_001202474.3	54	tCc/tTc																																																																														
TBX3	0	MSKCC	GRCh37	12	115110005	115110005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	68	534	2	ENST00000257566.3:c.1873C>A	p.Arg625Ser	p.R625S	ENST00000257566	NM_016569.3	625	Cgc/Agc																																																																														
FLT1	0	MSKCC	GRCh37	13	28913387	28913387	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	98	939	0	ENST00000282397.4:c.2406T>A	p.Asp802Glu	p.D802E	ENST00000282397	NM_002019.4	802	gaT/gaA																																																																														
MGA	0	MSKCC	GRCh37	15	42019548	42019548	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	263	1185	1	ENST00000219905.7:c.3601A>T	p.Lys1201Ter	p.K1201*	ENST00000219905	NM_001164273.1	1201	Aaa/Taa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11169040	11169040	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	216	658	0	ENST00000344626.4:c.4533+1G>T		p.X1511_splice	ENST00000344626	NM_003072.3	1511																																																																															
PAK7	0	MSKCC	GRCh37	20	9624818	9624818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	159	560	0	ENST00000353224.5:c.159G>T	p.Met53Ile	p.M53I	ENST00000353224	NM_177990.2	53	atG/atT																																																																														
PAK7	0	MSKCC	GRCh37	20	9624833	9624833	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	200	640	1	ENST00000353224.5:c.144C>A	p.Asn48Lys	p.N48K	ENST00000353224	NM_177990.2	48	aaC/aaA																																																																														
PTPRT	0	MSKCC	GRCh37	20	41408891	41408891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	294	819	0	ENST00000373198.4:c.535G>T	p.Val179Leu	p.V179L	ENST00000373198	NM_133170.3	179	Gtg/Ttg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53231106	53231106	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	299	457	0	ENST00000375401.3:c.1796G>T	p.Arg599Leu	p.R599L	ENST00000375401	NM_004187.3	599	cGt/cTt																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468028	50468029	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	107	538	0	ENST00000331340.3:c.1268_1269del	p.Arg423GlnfsTer65	p.R423Qfs*65	ENST00000331340	NM_006060.4	421	caCGcg/cacg																																																																														
DDR2	0	MSKCC	GRCh37	1	162725058	162725058	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	64	615	0	ENST00000367921.3:c.530del	p.Cys177LeufsTer2	p.C177Lfs*2	ENST00000367921	NM_006182.2	177	tGt/tt																																																																														
MLL3	0	MSKCC	GRCh37	7	151845852	151845852	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	258	650	0	ENST00000262189.6:c.13160del	p.Gly4387AlafsTer26	p.G4387Afs*26	ENST00000262189	NM_170606.2	4387	gGc/gc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212652872	212652873	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	123	567	0	ENST00000342788.4:c.433_434delinsAT	p.Gly145Ile	p.G145I	ENST00000342788	NM_005235.2	145	GGt/ATt																																																																														
TET2	0	MSKCC	GRCh37	4	106182927	106182928	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0009223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	151	763	0	ENST00000380013.4:c.3966_3967delinsTT	p.Glu1323Ter	p.E1323*	ENST00000380013	NM_001127208.2	1322	ctGGag/ctTTag																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	354	447	1	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851850	134851850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	206	340	0	ENST00000398015.3:c.1256C>T	p.Pro419Leu	p.P419L	ENST00000398015	NM_004441.4	419	cCc/cTc																																																																														
CARD11	0	MSKCC	GRCh37	7	2985489	2985489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	251	508	0	ENST00000396946.4:c.322G>A	p.Gly108Arg	p.G108R	ENST00000396946	NM_032415.4	108	Ggg/Agg																																																																														
EGFR	0	MSKCC	GRCh37	7	55273000	55273000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	246	365	0	ENST00000275493.2:c.3323C>G	p.Pro1108Arg	p.P1108R	ENST00000275493	NM_005228.3	1108	cCt/cGt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341806	8341806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	247	485	0	ENST00000356435.5:c.4834G>C	p.Ala1612Pro	p.A1612P	ENST00000356435		1612	Gca/Cca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486288	8486288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	191	234	0	ENST00000356435.5:c.2529G>T	p.Trp843Cys	p.W843C	ENST00000356435		843	tgG/tgT																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741946	17741946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	28	66	0	ENST00000250003.3:c.617G>T	p.Cys206Phe	p.C206F	ENST00000250003	NM_002478.4	206	tGc/tTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46245582	46245582	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	242	291	0	ENST00000334344.6:c.3676G>T	p.Gly1226Ter	p.G1226*	ENST00000334344	NM_152641.2	1226	Gga/Tga																																																																														
FLT1	0	MSKCC	GRCh37	13	29004236	29004236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	343	430	0	ENST00000282397.4:c.1057T>C	p.Tyr353His	p.Y353H	ENST00000282397	NM_002019.4	353	Tac/Cac																																																																														
ERBB2	0	MSKCC	GRCh37	17	37866710	37866710	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	287	377	0	ENST00000269571.5:c.877G>C	p.Ala293Pro	p.A293P	ENST00000269571		293	Gcc/Ccc																																																																														
SRC	0	MSKCC	GRCh37	20	36012741	36012741	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	72	124	1	ENST00000358208.4:c.185A>T	p.Lys62Met	p.K62M	ENST00000358208		62	aAg/aTg																																																																														
EP300	0	MSKCC	GRCh37	22	41568558	41568558	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	182	412	0	ENST00000263253.7:c.4508A>G	p.Tyr1503Cys	p.Y1503C	ENST00000263253	NM_001429.3	1503	tAt/tGt																																																																														
BCOR	0	MSKCC	GRCh37	X	39916468	39916468	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	390	502	0	ENST00000378444.4:c.4535T>C	p.Ile1512Thr	p.I1512T	ENST00000378444	NM_001123385.1	1512	aTt/aCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	362	466	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149460516	149460516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	254	364	1	ENST00000286301.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000286301	NM_005211.3	41	Cga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187509973	187509973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	332	366	0	ENST00000441802.2:c.13540G>C	p.Glu4514Gln	p.E4514Q	ENST00000441802	NM_005245.3	4514	Gaa/Caa																																																																														
MLL2	0	MSKCC	GRCh37	12	49424521	49424521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	241	350	0	ENST00000301067.7:c.13702G>A	p.Ala4568Thr	p.A4568T	ENST00000301067	NM_003482.3	4568	Gct/Act																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992321	72992321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	220	745	0	ENST00000268489.5:c.1724A>C	p.Glu575Ala	p.E575A	ENST00000268489	NM_006885.3	575	gAg/gCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	290	453	0	ENST00000269305.4:c.587G>C	p.Arg196Pro	p.R196P	ENST00000269305	NM_001126112.2	196	cGa/cCa																																																																														
RBM10	0	MSKCC	GRCh37	X	47045149	47045149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	288	225	0	ENST00000329236.7:c.2156C>T	p.Ser719Leu	p.S719L	ENST00000329236	NM_001204466.1	719	tCa/tTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	23	328	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0009296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	37	139	3	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	163	363	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FGF3	0	MSKCC	GRCh37	11	69625219	69625219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	70	500	0	ENST00000334134.2:c.574C>T	p.Arg192Trp	p.R192W	ENST00000334134	NM_005247.2	192	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	144	311	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	315	243	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	524	236	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	524	236	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
ERCC3	0	MSKCC	GRCh37	2	128016961	128016961	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	78	459	1	ENST00000285398.2:c.2128C>T	p.Gln710Ter	p.Q710*	ENST00000285398	NM_000122.1	710	Cag/Tag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921364	178921364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	77	339	0	ENST00000263967.3:c.846G>A	p.Met282Ile	p.M282I	ENST00000263967	NM_006218.2	282	atG/atA																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922760	44922760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	116	405	0	ENST00000377967.4:c.1621C>T	p.Gln541Ter	p.Q541*	ENST00000377967	NM_021140.2	541	Cag/Tag																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	524	236	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197306	26197306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	807	841	3	ENST00000356476.2:c.173C>T	p.Ser58Leu	p.S58L	ENST00000356476		58	tCg/tTg																																																																														
NF2	0	MSKCC	GRCh37	22	30074254	30074254	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	391	388	0	ENST00000338641.4:c.1516T>G	p.Ser506Ala	p.S506A	ENST00000338641	NM_000268.3	506	Tct/Gct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0009330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	76	308	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	96	387	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
TBX3	0	MSKCC	GRCh37	12	115118683	115118683	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	124	441	0	ENST00000257566.3:c.657+1G>T		p.X219_splice	ENST00000257566	NM_016569.3	219																																																																															
ARAF	0	MSKCC	GRCh37	X	47424198	47424198	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	117	543	0	ENST00000377045.4:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000377045	NM_001654.4	68	cGa/cAa																																																																														
SPEN	0	MSKCC	GRCh37	1	16255586	16255586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	241	424	0	ENST00000375759.3:c.2851G>A	p.Val951Met	p.V951M	ENST00000375759	NM_015001.2	951	Gtg/Atg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966612	25966612	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	265	307	0	ENST00000435504.4:c.2594T>A	p.Ile865Lys	p.I865K	ENST00000435504		865	aTa/aAa																																																																														
BAP1	0	MSKCC	GRCh37	3	52441974	52441974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0009347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	293	337	0	ENST00000460680.1:c.375G>T	p.Glu125Asp	p.E125D	ENST00000460680	NM_004656.3	125	gaG/gaT																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139405120	139405120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	187	465	0	ENST00000277541.6:c.2725G>A	p.Asp909Asn	p.D909N	ENST00000277541	NM_017617.3	909	Gac/Aac																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851957	63851957	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	49	203	0	ENST00000279873.7:c.2735A>G	p.Lys912Arg	p.K912R	ENST00000279873	NM_032199.2	912	aAg/aGg																																																																														
MEF2B	0	MSKCC	GRCh37	19	19258526	19258526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1252	488	590	0	ENST00000162023.5:c.374T>C	p.Leu125Ser	p.L125S	ENST00000162023		125	tTg/tCg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023789	31023789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	419	359	0	ENST00000375687.4:c.3274G>A	p.Val1092Met	p.V1092M	ENST00000375687	NM_015338.5	1092	Gtg/Atg																																																																														
NF2	0	MSKCC	GRCh37	22	30064351	30064351	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1736	121	510	0	ENST00000338641.4:c.915T>A	p.Asp305Glu	p.D305E	ENST00000338641	NM_000268.3	305	gaT/gaA																																																																														
VHL	0	MSKCC	GRCh37	3	10183804	10183804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	166	239	0	ENST00000256474.2:c.273del	p.Phe91LeufsTer68	p.F91Lfs*68	ENST00000256474	NM_000551.3	91	ttC/tt																																																																														
TP53	0	MSKCC	GRCh37	17	7578285	7578296	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGACCTAAGAG	CAGACCTAAGAG	-			P-0009347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	283	440	1	ENST00000269305.4:c.560-7_564del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0009350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	449	261	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																														
MET	0	MSKCC	GRCh37	7	116435732	116435732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	71	355	0	ENST00000397752.3:c.3822G>T	p.Trp1274Cys	p.W1274C	ENST00000397752	NM_000245.2	1274	tgG/tgT																																																																														
BTK	0	MSKCC	GRCh37	X	100626631	100626631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1278	94	661	0	ENST00000308731.7:c.299A>T	p.Tyr100Phe	p.Y100F	ENST00000308731	NM_000061.2	100	tAt/tTt																																																																														
RBM10	0	MSKCC	GRCh37	X	47045872	47045873	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0009350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	70	481	0	ENST00000329236.7:c.2434-1_2434delinsTT		p.X812_splice	ENST00000329236	NM_001204466.1	812																																																																															
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	267	337	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	30	361	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0009357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	320	350	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55221821	55221821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1359	402	619	0	ENST00000275493.2:c.865G>A	p.Ala289Thr	p.A289T	ENST00000275493	NM_005228.3	289	Gcc/Acc																																																																														
CARD11	0	MSKCC	GRCh37	7	2987260	2987260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	94	315	0	ENST00000396946.4:c.169G>A	p.Glu57Lys	p.E57K	ENST00000396946	NM_032415.4	57	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	71	477	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	0	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	62	605	1	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112174347	112174347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	54	378	0	ENST00000257430.4:c.3056G>C	p.Gly1019Ala	p.G1019A	ENST00000257430	NM_000038.5	1019	gGa/gCa																																																																														
MLL3	0	MSKCC	GRCh37	7	151856117	151856117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	88	516	0	ENST00000262189.6:c.11501G>A	p.Gly3834Asp	p.G3834D	ENST00000262189	NM_170606.2	3834	gGc/gAc																																																																														
TSC2	0	MSKCC	GRCh37	16	2121846	2121846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	32	363	0	ENST00000219476.3:c.2008C>T	p.Pro670Ser	p.P670S	ENST00000219476	NM_000548.3	670	Cct/Tct																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732984	74732984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	50	511	0	ENST00000359995.5:c.259G>T	p.Val87Leu	p.V87L	ENST00000359995	NM_001195427.1	87	Gtg/Ttg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602522	10602522	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	39	375	1	ENST00000171111.5:c.1056G>A	p.Trp352Ter	p.W352*	ENST00000171111	NM_203500.1	352	tgG/tgA																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11136975	11136975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	38	459	0	ENST00000344626.4:c.3169-1G>A		p.X1057_splice	ENST00000344626	NM_003072.3	1057																																																																															
MEN1	0	MSKCC	GRCh37	11	64571968	64571974	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCTCA	CTTCTCA	-			P-0009370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	54	980	1	ENST00000337652.1:c.1680_1686del	p.Ser560ArgfsTer2	p.S560Rfs*2	ENST00000337652	NM_130803.2	560	agTGAGAAG/ag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101100	27101100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009374-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			710	296	516	1	ENST00000324856.7:c.4382G>A	p.Arg1461Gln	p.R1461Q	ENST00000324856	NM_006015.4	1461	cGa/cAa																																																																														
JUN	0	MSKCC	GRCh37	1	59248360	59248360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009374-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			235	83	195	0	ENST00000371222.2:c.383C>A	p.Pro128His	p.P128H	ENST00000371222	NM_002228.3	128	cCc/cAc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41246130	41246130	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009374-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			897	214	599	0	ENST00000357654.3:c.1418A>G	p.Asn473Ser	p.N473S	ENST00000357654	NM_007294.3	473	aAc/aGc																																																																														
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	215	298	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106279	27106279	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	279	486	1	ENST00000324856.7:c.5890G>T	p.Glu1964Ter	p.E1964*	ENST00000324856	NM_006015.4	1964	Gag/Tag																																																																														
TERT	0	MSKCC	GRCh37	5	1293552	1293552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	289	483	0	ENST00000310581.5:c.1449C>G	p.Asn483Lys	p.N483K	ENST00000310581	NM_198253.2	483	aaC/aaG																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045873	26045873	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	471	841	0	ENST00000540144.1:c.235T>G	p.Phe79Val	p.F79V	ENST00000540144	NM_003531.2	79	Ttc/Gtc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112426	115112426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	100	400	0	ENST00000257566.3:c.1314C>G	p.Ser438Arg	p.S438R	ENST00000257566	NM_016569.3	438	agC/agG																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602611	10602637	+	inframe_deletion	In_Frame_Del	DEL	TGGGCGCCCGGCAGGGCATCACCTGCG	TGGGCGCCCGGCAGGGCATCACCTGCG	-			P-0009405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	289	440	0	ENST00000171111.5:c.941_967del	p.Thr314_Pro322del	p.T314_P322del	ENST00000171111	NM_203500.1	314	aCGCAGGTGATGCCCTGCCGGGCGCCCAag/aag																																																																														
RAF1	0	MSKCC	GRCh37	3	12660056	12660079	+	inframe_deletion	In_Frame_Del	DEL	GCTTGTCTTAGAAGGATCTGTGAG	GCTTGTCTTAGAAGGATCTGTGAG	-			P-0009405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	375	659	0	ENST00000251849.4:c.142_165del	p.Leu48_Ser55del	p.L48_S55del	ENST00000251849	NM_002880.3	48	CTCACAGATCCTTCTAAGACAAGC/-																																																																														
ROS1	0	MSKCC	GRCh37	6	117638352	117638353	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0009405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	278	547	0	ENST00000368508.3:c.6088_6089delinsTT	p.Glu2030Leu	p.E2030L	ENST00000368508	NM_002944.2	2030	GAg/TTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	35	287	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	295	749	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18278049	18278049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	112	534	0	ENST00000222254.8:c.1669G>A	p.Asp557Asn	p.D557N	ENST00000222254	NM_005027.3	557	Gac/Aac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105745	27105745	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	48	599	0	ENST00000324856.7:c.5356G>C	p.Glu1786Gln	p.E1786Q	ENST00000324856	NM_006015.4	1786	Gag/Cag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106862	27106862	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142069738		P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	54	410	1	ENST00000324856.7:c.6473G>A	p.Arg2158Gln	p.R2158Q	ENST00000324856	NM_006015.4	2158	cGa/cAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47165313	47165313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	133	674	0	ENST00000409792.3:c.813G>C	p.Leu271Phe	p.L271F	ENST00000409792	NM_014159.6	271	ttG/ttC																																																																														
MST1R	0	MSKCC	GRCh37	3	49933743	49933743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	146	795	0	ENST00000296474.3:c.2534G>A	p.Arg845Gln	p.R845Q	ENST00000296474	NM_002447.2	845	cGa/cAa																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182662954	182662954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	90	362	0	ENST00000292782.4:c.708G>T	p.Trp236Cys	p.W236C	ENST00000292782	NM_020640.2	236	tgG/tgT																																																																														
FAT1	0	MSKCC	GRCh37	4	187524530	187524530	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	114	620	0	ENST00000441802.2:c.11150C>G	p.Ser3717Cys	p.S3717C	ENST00000441802	NM_005245.3	3717	tCt/tGt																																																																														
IL7R	0	MSKCC	GRCh37	5	35876151	35876151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	47	622	0	ENST00000303115.3:c.943C>G	p.Gln315Glu	p.Q315E	ENST00000303115	NM_002185.3	315	Caa/Gaa																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138198296	138198296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	123	572	0	ENST00000237289.4:c.889G>A	p.Glu297Lys	p.E297K	ENST00000237289	NM_001270507.1	297	Gag/Aag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509603	106509603	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	127	568	1	ENST00000359195.3:c.1597C>T	p.Gln533Ter	p.Q533*	ENST00000359195	NM_002649.2	533	Cag/Tag																																																																														
MLL	0	MSKCC	GRCh37	11	118343837	118343837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	66	629	0	ENST00000534358.1:c.1963C>T	p.Pro655Ser	p.P655S	ENST00000534358	NM_005933.3	655	Cca/Tca																																																																														
BRCA2	0	MSKCC	GRCh37	13	32929080	32929080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	162	911	1	ENST00000380152.3:c.7090G>A	p.Glu2364Lys	p.E2364K	ENST00000380152		2364	Gaa/Aaa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32929347	32929347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	138	1006	0	ENST00000380152.3:c.7357G>C	p.Glu2453Gln	p.E2453Q	ENST00000380152		2453	Gag/Cag																																																																														
RAD51B	0	MSKCC	GRCh37	14	68301900	68301900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	103	448	0	ENST00000487270.1:c.302G>C	p.Gly101Ala	p.G101A	ENST00000487270	NM_133509.3	101	gGa/gCa																																																																														
RAD51	0	MSKCC	GRCh37	15	40991041	40991041	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	56	654	0	ENST00000267868.3:c.85G>C	p.Glu29Gln	p.E29Q	ENST00000267868	NM_002875.4	29	Gag/Cag																																																																														
CTCF	0	MSKCC	GRCh37	16	67644841	67644841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	58	516	0	ENST00000264010.4:c.106G>A	p.Asp36Asn	p.D36N	ENST00000264010	NM_006565.3	36	Gat/Aat																																																																														
NCOR1	0	MSKCC	GRCh37	17	15971319	15971319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	96	517	1	ENST00000268712.3:c.4630C>T	p.His1544Tyr	p.H1544Y	ENST00000268712	NM_006311.3	1544	Cac/Tac																																																																														
NCOR1	0	MSKCC	GRCh37	17	15995288	15995288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	163	587	0	ENST00000268712.3:c.2905G>A	p.Glu969Lys	p.E969K	ENST00000268712	NM_006311.3	969	Gag/Aag																																																																														
TCF3	0	MSKCC	GRCh37	19	1632056	1632056	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	136	816	0	ENST00000344749.5:c.279C>G	p.Phe93Leu	p.F93L	ENST00000344749	NM_001136139.2	93	ttC/ttG																																																																														
KDM5C	0	MSKCC	GRCh37	X	53243937	53243937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	180	428	0	ENST00000375401.3:c.1056C>G	p.Phe352Leu	p.F352L	ENST00000375401	NM_004187.3	352	ttC/ttG																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	278	211	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	429	597	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	81	230	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	164	364	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	421	581	1	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	392	439	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822585	72822586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	107	358	0	ENST00000268489.5:c.9589dupC	p.Gln3197ProfsTer42	p.Q3197Pfs*42	ENST00000268489	NM_006885.3	3197	cag/cCag																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	338	418	0	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																														
MGA	0	MSKCC	GRCh37	15	42052636	42052636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	466	546	0	ENST00000219905.7:c.7307G>A	p.Arg2436His	p.R2436H	ENST00000219905	NM_001164273.1	2436	cGt/cAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	74	77	0				ENST00000310581	NM_198253.2																																																																																
VHL	0	MSKCC	GRCh37	3	10183787	10183787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	127	168	1	ENST00000256474.2:c.256C>T	p.Pro86Ser	p.P86S	ENST00000256474	NM_000551.3	86	Ccc/Tcc																																																																														
SDCCAG8	0	MSKCC	GRCh37	1	243663074	243663074	+	downstream_gene_variant	3'Flank	SNP	A	A	C			P-0009438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	199	274	0				ENST00000263826	NM_005465.4																																																																																
EP300	0	MSKCC	GRCh37	22	41566535	41566535	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	210	438	2	ENST00000263253.7:c.4412T>A	p.Leu1471His	p.L1471H	ENST00000263253	NM_001429.3	1471	cTt/cAt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52597506	52597506	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	120	225	0	ENST00000394830.3:c.3804delA	p.Lys1268AsnfsTer20	p.K1268Nfs*20	ENST00000394830	NM_018313.4	1268	aaA/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0009441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	90	168	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	207	424	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt																																																																														
KIT	0	MSKCC	GRCh37	4	55604715	55604715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	65	196	0	ENST00000288135.5:c.2923G>A	p.Asp975Asn	p.D975N	ENST00000288135	NM_000222.2	975	Gat/Aat																																																																														
STAT5A	0	MSKCC	GRCh37	17	40453306	40453306	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1198	289	721	0	ENST00000345506.4:c.1003G>C	p.Glu335Gln	p.E335Q	ENST00000345506	NM_003152.3	335	Gag/Cag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5258030	5258030	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	76	266	0	ENST00000357368.4:c.704G>A	p.Arg235Gln	p.R235Q	ENST00000357368	NM_002850.3	235	cGa/cAa																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032094	26032095	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	G			P-0009441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1206	73	854	0	ENST00000244661.2:c.194_195delinsC	p.Lys65ThrfsTer26	p.K65Tfs*26	ENST00000244661	NM_003537.3	65	aAG/aC																																																																														
FLT3	0	MSKCC	GRCh37	13	28599081	28599081	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	28	261	0	ENST00000241453.7:c.2208-1G>A		p.X736_splice	ENST00000241453	NM_004119.2	736																																																																															
TP53	0	MSKCC	GRCh37	17	7572929	7572929	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0009448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	80	438	0	ENST00000269305.4:c.1180T>G	p.Ter394GlyextTer9	p.*394Gext*9	ENST00000269305	NM_001126112.2	394	Tga/Gga																																																																														
MED12	0	MSKCC	GRCh37	X	70349240	70349240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	53	271	0	ENST00000374080.3:c.3652G>C	p.Gly1218Arg	p.G1218R	ENST00000374080		1218	Gga/Cga																																																																														
STAT3	0	MSKCC	GRCh37	17	40497639	40497640	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0009448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	72	564	0	ENST00000264657.5:c.309_310del	p.Ile104CysfsTer67	p.I104Cfs*67	ENST00000264657	NM_139276.2	103	cgGAtt/cgtt																																																																														
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	316	381	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20156742	20156742	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0009497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			23	230	203	0	ENST00000379607.5:c.17-2A>G		p.X6_splice	ENST00000379607	NM_001412.3	6																																																																															
BCOR	0	MSKCC	GRCh37	X	39923657	39923657	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	341	253	0	ENST00000378444.4:c.3434C>G	p.Thr1145Ser	p.T1145S	ENST00000378444	NM_001123385.1	1145	aCt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	35	395	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0009519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	21	405	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0009519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	40	442	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0009519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	45	525	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	33	338	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	598	294	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	206	483	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																																																														
IRF4	0	MSKCC	GRCh37	6	401642	401642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	103	318	0	ENST00000380956.4:c.964G>A	p.Asp322Asn	p.D322N	ENST00000380956	NM_001195286.1	322	Gac/Aac																																																																														
SF3B1	0	MSKCC	GRCh37	2	198273162	198273162	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	208	483	0	ENST00000335508.6:c.1048A>T	p.Thr350Ser	p.T350S	ENST00000335508	NM_012433.2	350	Act/Tct																																																																														
RASA1	0	MSKCC	GRCh37	5	86633863	86633863	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1315	290	428	0	ENST00000274376.6:c.972A>T	p.Arg324Ser	p.R324S	ENST00000274376	NM_002890.2	324	agA/agT																																																																														
FLT4	0	MSKCC	GRCh37	5	180053028	180053028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	129	307	0	ENST00000261937.6:c.1262C>T	p.Pro421Leu	p.P421L	ENST00000261937	NM_182925.4	421	cCc/cTc																																																																														
CCND3	0	MSKCC	GRCh37	6	41909370	41909370	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	74	130	0	ENST00000372991.4:c.18C>A	p.Cys6Ter	p.C6*	ENST00000372991	NM_001760.3	6	tgC/tgA																																																																														
RAD21	0	MSKCC	GRCh37	8	117874132	117874132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1501	277	497	0	ENST00000297338.2:c.322A>T	p.Ile108Phe	p.I108F	ENST00000297338	NM_006265.2	108	Att/Ttt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500979	8500979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	157	401	0	ENST00000356435.5:c.1903G>T	p.Val635Leu	p.V635L	ENST00000356435		635	Gtg/Ttg																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50479292	50479292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	90	258	0	ENST00000394963.4:c.140G>T	p.Gly47Val	p.G47V	ENST00000394963	NM_003076.4	47	gGg/gTg																																																																														
STAG2	0	MSKCC	GRCh37	X	123204998	123204998	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	53	107	1	ENST00000218089.9:c.2359-1G>T		p.X787_splice	ENST00000218089	NM_001042749.1	787																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	46	348	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0009542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	35	379	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
CSF3R	0	MSKCC	GRCh37	1	36939043	36939043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1511	90	553	0	ENST00000361632.4:c.666G>C	p.Met222Ile	p.M222I	ENST00000361632		222	atG/atC																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857611	9857611	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	85	314	0	ENST00000330684.3:c.3790G>T	p.Glu1264Ter	p.E1264*	ENST00000330684	NM_001134407.1	1264	Gag/Tag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0009555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	14	672	0	ENST00000269571.5:c.2263_2264delTTinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	452	331	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ERG	0	MSKCC	GRCh37	21	39817412	39817412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200306085		P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	286	396	2	ENST00000288319.7:c.151G>A	p.Val51Ile	p.V51I	ENST00000288319	NM_182918.3	51	Gtc/Atc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281551	15281551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	764	505	2	ENST00000263388.2:c.4822G>A	p.Ala1608Thr	p.A1608T	ENST00000263388	NM_000435.2	1608	Gct/Act																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197824	66197824	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200305031		P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	141	362	0	ENST00000273854.3:c.2875C>G	p.His959Asp	p.H959D	ENST00000273854	NM_004439.5	959	Cat/Gat																																																																														
STK11	0	MSKCC	GRCh37	19	1222982	1222982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	198	177	0	ENST00000326873.7:c.921-2A>G		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
KEAP1	0	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	376	365	1	ENST00000171111.5:c.815G>T	p.Arg272Leu	p.R272L	ENST00000171111	NM_203500.1	272	cGc/cTc																																																																														
CEBPA	0	MSKCC	GRCh37	19	33793208	33793208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	54	32	1	ENST00000498907.2:c.113G>A	p.Gly38Asp	p.G38D	ENST00000498907	NM_004364.3	38	gGc/gAc																																																																														
STAG2	0	MSKCC	GRCh37	X	123181311	123181311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	262	214	0	ENST00000218089.9:c.775C>T	p.Arg259Ter	p.R259*	ENST00000218089	NM_001042749.1	259	Cga/Tga																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226642	2226642	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	278	287	0	ENST00000398665.3:c.4122del	p.Asp1374GlufsTer6	p.D1374Efs*6	ENST00000398665	NM_032482.2	1374	gaC/ga																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	168	312	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	98	385	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			25	84	152	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
JAK1	0	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	85	506	4	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																														
CTCF	0	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	136	425	0	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	18	376	0	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	194	337	1	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
LATS1	0	MSKCC	GRCh37	6	149983228	149983228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	78	374	0	ENST00000253339.5:c.3030delT	p.Phe1010LeufsTer10	p.F1010Lfs*10	ENST00000253339		1010	ttT/tt																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	86	452	5	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
MST1R	0	MSKCC	GRCh37	3	49940385	49940385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	25	709	3	ENST00000296474.3:c.658C>T	p.Arg220Cys	p.R220C	ENST00000296474	NM_002447.2	220	Cgt/Tgt																																																																														
FAT1	0	MSKCC	GRCh37	4	187534263	187534263	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	44	183	0	ENST00000441802.2:c.9463G>T	p.Gly3155Ter	p.G3155*	ENST00000441802	NM_005245.3	3155	Gga/Tga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67593403	67593403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	56	251	0	ENST00000274335.5:c.2149C>T	p.Pro717Ser	p.P717S	ENST00000274335		717	Cca/Tca																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468030	50468030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	60	282	0	ENST00000331340.3:c.1265C>T	p.Ala422Val	p.A422V	ENST00000331340	NM_006060.4	422	gCg/gTg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98241359	98241359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	111	447	0	ENST00000331920.6:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000331920	NM_000264.3	380	Gag/Aag																																																																														
CBL	0	MSKCC	GRCh37	11	119170286	119170286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	13	366	0	ENST00000264033.4:c.2516G>A	p.Ser839Asn	p.S839N	ENST00000264033	NM_005188.3	839	aGc/aAc																																																																														
TSC2	0	MSKCC	GRCh37	16	2115590	2115590	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	30	473	0	ENST00000219476.3:c.1670T>C	p.Leu557Ser	p.L557S	ENST00000219476	NM_000548.3	557	tTg/tCg																																																																														
ERCC4	0	MSKCC	GRCh37	16	14042073	14042073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	13	365	0	ENST00000311895.7:c.2620G>A	p.Ala874Thr	p.A874T	ENST00000311895	NM_005236.2	874	Gca/Aca																																																																														
PLCG2	0	MSKCC	GRCh37	16	81973526	81973526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	107	588	0	ENST00000359376.3:c.3343C>A	p.Pro1115Thr	p.P1115T	ENST00000359376	NM_002661.3	1115	Cca/Aca																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226464	2226464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	13	383	1	ENST00000398665.3:c.3944G>A	p.Gly1315Asp	p.G1315D	ENST00000398665	NM_032482.2	1315	gGc/gAc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602616	10602616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	53	413	0	ENST00000171111.5:c.962C>T	p.Ala321Val	p.A321V	ENST00000171111	NM_203500.1	321	gCg/gTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11145675	11145675	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	14	395	1	ENST00000344626.4:c.4037G>T	p.Trp1346Leu	p.W1346L	ENST00000344626	NM_003072.3	1346	tGg/tTg																																																																														
CIC	0	MSKCC	GRCh37	19	42797778	42797778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	83	319	0	ENST00000575354.2:c.3830G>A	p.Arg1277His	p.R1277H	ENST00000575354	NM_015125.3	1277	cGc/cAc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223769	53223769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	117	567	2	ENST00000375401.3:c.3590C>T	p.Ala1197Val	p.A1197V	ENST00000375401	NM_004187.3	1197	gCg/gTg																																																																														
BTK	0	MSKCC	GRCh37	X	100613328	100613328	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	83	493	0	ENST00000308731.7:c.1072C>G	p.Leu358Val	p.L358V	ENST00000308731	NM_000061.2	358	Ctc/Gtc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589552	67589587	+	inframe_deletion	In_Frame_Del	DEL	GAAGATAATATTGAAGCTGTAGGGAAAAAATTACAT	GAAGATAATATTGAAGCTGTAGGGAAAAAATTACAT	-			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	151	358	0	ENST00000274335.5:c.1318_1353del	p.Asp440_Glu451del	p.D440_E451del	ENST00000274335		439	GAAGATAATATTGAAGCTGTAGGGAAAAAATTACAT/-																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400212	139400212	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	48	335	0	ENST00000277541.6:c.4136del	p.Thr1379ArgfsTer66	p.T1379Rfs*66	ENST00000277541	NM_017617.3	1379	aCg/ag																																																																														
TBX3	0	MSKCC	GRCh37	12	115112322	115112323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			29	15	24	0	ENST00000257566.3:c.1416_1417dup	p.Leu473ArgfsTer160	p.L473Rfs*160	ENST00000257566	NM_016569.3	473	ctc/cGCtc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223445	53223445	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	77	465	0	ENST00000375401.3:c.3914del	p.Leu1305TrpfsTer53	p.L1305Wfs*53	ENST00000375401	NM_004187.3	1305	tTg/tg																																																																														
MLL3	0	MSKCC	GRCh37	7	151884924	151884924	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	15	246	0	ENST00000262189.6:c.4669del	p.Ser1557HisfsTer6	p.S1557Hfs*6	ENST00000262189	NM_170606.2	1557	Tca/ca																																																																														
MLL3	0	MSKCC	GRCh37	7	151960150	151960151	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	119	457	0	ENST00000262189.6:c.1249dup	p.Cys417LeufsTer30	p.C417Lfs*30	ENST00000262189	NM_170606.2	417	tgt/tTgt																																																																														
EP300	0	MSKCC	GRCh37	22	41574679	41574679	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	129	629	0	ENST00000263253.7:c.6970delC	p.His2324ThrfsTer29	p.H2324Tfs*29	ENST00000263253	NM_001429.3	2322	Ccc/cc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94153333	94153335	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	51	341	1	ENST00000323929.3:c.2083_2085delGAT	p.Asp695del	p.D695del	ENST00000323929	NM_005591.3	695	GAT/-																																																																														
EP300	0	MSKCC	GRCh37	22	41566524	41566525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	126	458	0	ENST00000263253.7:c.4408dup	p.Met1470AsnfsTer3	p.M1470Nfs*3	ENST00000263253	NM_001429.3	1467	-/A																																																																														
CALR	0	MSKCC	GRCh37	19	13050364	13050364	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	210	636	2	ENST00000316448.5:c.320delG	p.Gly107AlafsTer4	p.G107Afs*4	ENST00000316448	NM_004343.3	106	Ggg/gg																																																																														
KRAS	0	MSKCC	GRCh37	12	25368476	25368476	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	25	367	0	ENST00000256078.4:c.469del	p.Tyr157IlefsTer4	p.Y157Ifs*4	ENST00000256078	NM_033360.2	157	Tat/at																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089463	27089463	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	108	380	0	ENST00000324856.7:c.2420-1G>C		p.X807_splice	ENST00000324856	NM_006015.4	807																																																																															
PMS1	0	MSKCC	GRCh37	2	190732586	190732586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	182	593	0	ENST00000441310.2:c.2404T>C	p.Tyr802His	p.Y802H	ENST00000441310	NM_000534.4	802	Tac/Cac																																																																														
SETD2	0	MSKCC	GRCh37	3	47147534	47147534	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	124	408	0	ENST00000409792.3:c.4792C>T	p.Arg1598Ter	p.R1598*	ENST00000409792	NM_014159.6	1598	Cga/Tga																																																																														
EPHA7	0	MSKCC	GRCh37	6	94124445	94124445	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	213	778	0	ENST00000369303.4:c.138G>C	p.Glu46Asp	p.E46D	ENST00000369303	NM_004440.3	46	gaG/gaC																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106545561	106545561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	312	426	0	ENST00000359195.3:c.3038G>T	p.Cys1013Phe	p.C1013F	ENST00000359195	NM_002649.2	1013	tGt/tTt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114910852	114910852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	267	914	0	ENST00000543371.1:c.971C>G	p.Ser324Cys	p.S324C	ENST00000543371	NM_001198531.1	324	tCc/tGc																																																																														
ATM	0	MSKCC	GRCh37	11	108178627	108178627	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	111	270	0	ENST00000278616.4:c.5678C>G	p.Ser1893Ter	p.S1893*	ENST00000278616	NM_000051.3	1893	tCa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	672	448	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88799302	88799302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	128	554	1	ENST00000360948.2:c.83C>A	p.Ser28Tyr	p.S28Y	ENST00000360948	NM_001012338.2	28	tCc/tAc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14029431	14029431	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	89	352	0	ENST00000311895.7:c.1642A>C	p.Lys548Gln	p.K548Q	ENST00000311895	NM_005236.2	548	Aaa/Caa																																																																														
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	237	446	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2214474	2214474	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	204	364	0	ENST00000398665.3:c.1802A>T	p.Lys601Met	p.K601M	ENST00000398665	NM_032482.2	601	aAg/aTg																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4101057	4101057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	52	193	1	ENST00000262948.5:c.665C>A	p.Ser222Tyr	p.S222Y	ENST00000262948	NM_030662.3	222	tCc/tAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47125566	47125567	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0009591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	202	589	0	ENST00000409792.3:c.5703_5704delinsT	p.Glu1901AspfsTer12	p.E1901Dfs*12	ENST00000409792	NM_014159.6	1901	gaAGgc/gaTgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	590	347	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023676	27023676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	204	216	0	ENST00000324856.7:c.782C>A	p.Ser261Ter	p.S261*	ENST00000324856	NM_006015.4	261	tCg/tAg																																																																														
ATM	0	MSKCC	GRCh37	11	108175420	108175420	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	177	337	0	ENST00000278616.4:c.5515C>T	p.Gln1839Ter	p.Q1839*	ENST00000278616	NM_000051.3	1839	Cag/Tag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89341236	89341236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	238	363	1	ENST00000301030.4:c.7699C>T	p.Pro2567Ser	p.P2567S	ENST00000301030	NM_001256183.1	2567	Ccc/Tcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	3435	532	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
ABL1	0	MSKCC	GRCh37	9	133759361	133759361	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	217	558	0	ENST00000318560.5:c.1684C>G	p.Leu562Val	p.L562V	ENST00000318560	NM_005157.4	562	Ctg/Gtg																																																																														
SETD2	0	MSKCC	GRCh37	3	47158145	47158145	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	205	562	0	ENST00000409792.3:c.4554del	p.Asp1519IlefsTer8	p.D1519Ifs*8	ENST00000409792	NM_014159.6	1518	gaA/ga																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967202	93967203	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0009623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	329	506	0	ENST00000369303.4:c.2149_2150delinsTT	p.Gly717Leu	p.G717L	ENST00000369303	NM_004440.3	717	GGa/TTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578428	7578431	+	stop_gained	Nonsense_Mutation	ONP	GCTG	GCTG	ACTA			P-0009623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	200	416	0	ENST00000269305.4:c.499_502delinsTAGT	p.Gln167_His168delinsTer	p.Q167_H168delins*	ENST00000269305	NM_001126112.2	167	CAGCac/TAGTac																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	251	601	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	141	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398290	25398290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	136	365	1	ENST00000256078.4:c.29G>T	p.Gly10Val	p.G10V	ENST00000256078	NM_033360.2	10	gGa/gTa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32893460	32893460	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	G			P-0009633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	78	258	0	ENST00000380152.3:c.314T>G	p.Leu105Ter	p.L105*	ENST00000380152		105	tTa/tGa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533113	63533113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	141	395	0	ENST00000307078.5:c.1781C>G	p.Ala594Gly	p.A594G	ENST00000307078	NM_004655.3	594	gCc/gGc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922995	44922995	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	194	599	0	ENST00000377967.4:c.1856A>G	p.His619Arg	p.H619R	ENST00000377967	NM_021140.2	619	cAt/cGt																																																																														
ARAF	0	MSKCC	GRCh37	X	47426106	47426106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	222	590	1	ENST00000377045.4:c.626G>A	p.Arg209His	p.R209H	ENST00000377045	NM_001654.4	209	cGc/cAc																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	376	417	2	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108225591	108225591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	158	457	0	ENST00000278616.4:c.8840C>A	p.Thr2947Asn	p.T2947N	ENST00000278616	NM_000051.3	2947	aCc/aAc																																																																														
FLT3	0	MSKCC	GRCh37	13	28599003	28599003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	112	399	0	ENST00000241453.7:c.2285C>G	p.Ser762Cys	p.S762C	ENST00000241453	NM_004119.2	762	tCt/tGt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276196	15276196	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	215	470	0	ENST00000263388.2:c.5798A>G	p.Asn1933Ser	p.N1933S	ENST00000263388	NM_000435.2	1933	aAt/aGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023467	27023486	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGGAGCCCTACGCGGGGC	CCTGGAGCCCTACGCGGGGC	-			P-0009636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	722	406	0	ENST00000324856.7:c.575_594del	p.Leu192ProfsTer201	p.L192Pfs*201	ENST00000324856	NM_006015.4	191	ggCCTGGAGCCCTACGCGGGGCcc/ggcc																																																																														
GATA3	0	MSKCC	GRCh37	10	8111495	8111496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGAGGA			P-0009636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	367	411	0	ENST00000346208.3:c.982_988dup	p.Arg330MetfsTer24	p.R330Mfs*24	ENST00000346208		327	-/TGGAGGA																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	61	190	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120612013	120612014	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0009656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	12	53	0	ENST00000256646.2:c.7_8delinsTT	p.Ala3Phe	p.A3F	ENST00000256646	NM_024408.3	3	GCc/TTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	293	610	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act																																																																														
TET1	0	MSKCC	GRCh37	10	70426850	70426850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	171	650	1	ENST00000373644.4:c.4510C>T	p.Gln1504Ter	p.Q1504*	ENST00000373644	NM_030625.2	1504	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7579374	7579382	+	inframe_deletion	In_Frame_Del	DEL	CCTGGTAGG	CCTGGTAGG	-			P-0009686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	145	647	0	ENST00000269305.4:c.305_313del	p.Thr102_Gly105delinsSer	p.T102_G105delinsS	ENST00000269305	NM_001126112.2	102	aCCTACCAGGgc/agc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	330	399	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	184	426	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664465	138664465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	136	231	0	ENST00000330315.3:c.1100C>T	p.Thr367Ile	p.T367I	ENST00000330315	NM_023067.3	367	aCc/aTc																																																																														
KDR	0	MSKCC	GRCh37	4	55987337	55987337	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	112	337	0	ENST00000263923.4:c.88G>C	p.Asp30His	p.D30H	ENST00000263923	NM_002253.2	30	Gat/Cat																																																																														
EPHA7	0	MSKCC	GRCh37	6	93955087	93955087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	169	737	0	ENST00000369303.4:c.2811G>A	p.Met937Ile	p.M937I	ENST00000369303	NM_004440.3	937	atG/atA																																																																														
CD276	0	MSKCC	GRCh37	15	74003497	74003497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	322	636	0	ENST00000318443.5:c.1568C>G	p.Ser523Cys	p.S523C	ENST00000318443	NM_001024736.1	523	tCt/tGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68849515	68849515	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	290	593	0	ENST00000261769.5:c.1418T>A	p.Val473Asp	p.V473D	ENST00000261769	NM_004360.3	473	gTc/gAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5219316	5219322	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTACTT	CTTACTT	-			P-0009692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	183	442	0	ENST00000357368.4:c.3922_3923+5del		p.X1308_splice	ENST00000357368	NM_002850.3	1308																																																																															
CREBBP	0	MSKCC	GRCh37	16	3779105	3779105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	95	489	0	ENST00000262367.5:c.5943G>A	p.Met1981Ile	p.M1981I	ENST00000262367	NM_004380.2	1981	atG/atA																																																																														
CDK12	0	MSKCC	GRCh37	17	37646852	37646852	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	328	903	0	ENST00000447079.4:c.1975del	p.Glu659AsnfsTer94	p.E659Nfs*94	ENST00000447079	NM_015083.1	658	aaG/aa																																																																														
CDK12	0	MSKCC	GRCh37	17	37618700	37618701	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	155	866	0	ENST00000447079.4:c.376_377insT	p.Lys126IlefsTer31	p.K126Ifs*31	ENST00000447079	NM_015083.1	126	aaa/aTaa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061191	38061202	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGCGCTTCTG	GAAGCGCTTCTG	AA			P-0009699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	77	262	0	ENST00000250448.2:c.787_798delinsTT	p.Gln263LeufsTer55	p.Q263Lfs*55	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTC/TT																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	493	557	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242486	+	inframe_deletion	In_Frame_Del	DEL	TTAAGAGAAGCAACATCT	TTAAGAGAAGCAACATCT	-	rs121913440		P-0009704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	275	463	0	ENST00000275493.2:c.2239_2256del	p.Leu747_Ser752del	p.L747_S752del	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCT/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	65	218	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
CARD11	0	MSKCC	GRCh37	7	2959109	2959109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	102	365	1	ENST00000396946.4:c.2407G>A	p.Val803Ile	p.V803I	ENST00000396946	NM_032415.4	803	Gtc/Atc																																																																														
APC	0	MSKCC	GRCh37	5	112175707	112175707	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	74	392	0	ENST00000257430.4:c.4418del	p.Asn1473MetfsTer34	p.N1473Mfs*34	ENST00000257430	NM_000038.5	1472	gtA/gt																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	350	537	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
STK11	0	MSKCC	GRCh37	19	1220469	1220469	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	413	726	0	ENST00000326873.7:c.563del	p.Gly188AlafsTer99	p.G188Afs*99	ENST00000326873	NM_000455.4	188	Ggc/gc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911502	134911502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	171	499	0	ENST00000398015.3:c.1967G>T	p.Gly656Val	p.G656V	ENST00000398015	NM_004441.4	656	gGg/gTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11300456	11300456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1301	343	546	0	ENST00000361445.4:c.1690C>A	p.Gln564Lys	p.Q564K	ENST00000361445	NM_004958.3	564	Cag/Aag																																																																														
NTRK1	0	MSKCC	GRCh37	1	156848960	156848960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1372	322	634	1	ENST00000524377.1:c.1852G>T	p.Ala618Ser	p.A618S	ENST00000524377	NM_002529.3	618	Gct/Tct																																																																														
MSH6	0	MSKCC	GRCh37	2	48010478	48010478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	109	263	3	ENST00000234420.5:c.106G>T	p.Ala36Ser	p.A36S	ENST00000234420	NM_000179.2	36	Gct/Tct																																																																														
ARID1B	0	MSKCC	GRCh37	6	157505555	157505555	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	101	337	0	ENST00000346085.5:c.3536A>C	p.Gln1179Pro	p.Q1179P	ENST00000346085	NM_020732.3	1179	cAg/cCg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485865	8485865	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1502	208	744	1	ENST00000356435.5:c.2952A>T	p.Leu984Phe	p.L984F	ENST00000356435		984	ttA/ttT																																																																														
WT1	0	MSKCC	GRCh37	11	32456447	32456447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	189	340	1	ENST00000332351.3:c.445G>T	p.Ala149Ser	p.A149S	ENST00000332351	NM_024426.4	149	Gcg/Tcg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112136	115112136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1368	162	639	2	ENST00000257566.3:c.1604C>A	p.Ala535Glu	p.A535E	ENST00000257566	NM_016569.3	535	gCg/gAg																																																																														
TBX3	0	MSKCC	GRCh37	12	115118796	115118796	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1457	418	718	0	ENST00000257566.3:c.545A>G	p.Lys182Arg	p.K182R	ENST00000257566	NM_016569.3	182	aAg/aGg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67358697	67358697	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	142	490	0	ENST00000327367.4:c.205A>T	p.Arg69Trp	p.R69W	ENST00000327367	NM_005902.3	69	Agg/Tgg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88423505	88423505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1342	436	814	1	ENST00000360948.2:c.2330C>A	p.Thr777Lys	p.T777K	ENST00000360948	NM_001012338.2	777	aCg/aAg																																																																														
NF1	0	MSKCC	GRCh37	17	29533256	29533256	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	447	619	0	ENST00000358273.4:c.1261-2A>T		p.X421_splice	ENST00000358273	NM_001042492.2	421																																																																															
STAT5A	0	MSKCC	GRCh37	17	40453425	40453425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2823	352	1244	0	ENST00000345506.4:c.1122C>G	p.Ile374Met	p.I374M	ENST00000345506	NM_003152.3	374	atC/atG																																																																														
AXL	0	MSKCC	GRCh37	19	41737110	41737110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1932	280	884	0	ENST00000301178.4:c.690C>A	p.Asn230Lys	p.N230K	ENST00000301178	NM_021913.4	230	aaC/aaA																																																																														
KDM5C	0	MSKCC	GRCh37	X	53222511	53222511	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	109	231	1	ENST00000375401.3:c.4321G>T	p.Glu1441Ter	p.E1441*	ENST00000375401	NM_004187.3	1441	Gag/Tag																																																																														
IL10	0	MSKCC	GRCh37	1	206944289	206944290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1384	363	727	0	ENST00000423557.1:c.340dup	p.Glu114GlyfsTer20	p.E114Gfs*20	ENST00000423557	NM_000572.2	114	gag/gGag																																																																														
RASA1	0	MSKCC	GRCh37	5	86627317	86627317	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	216	494	0	ENST00000274376.6:c.692+1del		p.R231fs	ENST00000274376	NM_002890.2	231	aGg/ag																																																																														
BRCA1	0	MSKCC	GRCh37	17	41256963	41256963	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	297	557	0	ENST00000357654.3:c.223del	p.Glu75LysfsTer13	p.E75Kfs*13	ENST00000357654	NM_007294.3	75	Gaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0009717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	202	551	4	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
BTK	0	MSKCC	GRCh37	X	100615568	100615568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	284	376	0	ENST00000308731.7:c.764G>C	p.Arg255Pro	p.R255P	ENST00000308731	NM_000061.2	255	cGa/cCa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240753	53240758	+	inframe_deletion	In_Frame_Del	DEL	CAGCTC	CAGCTC	-			P-0009717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	44	399	0	ENST00000375401.3:c.1322_1327del	p.Gly441_Ala442del	p.G441_A442del	ENST00000375401	NM_004187.3	441	gGAGCTGac/gac																																																																														
VHL	0	MSKCC	GRCh37	3	10183791	10183791	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	88	369	0	ENST00000256474.2:c.260del	p.Val87AspfsTer72	p.V87Dfs*72	ENST00000256474	NM_000551.3	87	gTa/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7578254	7578254	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	197	474	1	ENST00000269305.4:c.595G>T	p.Gly199Ter	p.G199*	ENST00000269305	NM_001126112.2	199	Gga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	505	223	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18524246	18524246	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1339	458	317	1	ENST00000266497.5:c.1757+1G>T		p.X586_splice	ENST00000266497		586																																																																															
ARID1A	0	MSKCC	GRCh37	1	27088668	27088668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	660	304	0	ENST00000324856.7:c.2277G>A	p.Met759Ile	p.M759I	ENST00000324856	NM_006015.4	759	atG/atA																																																																														
FH	0	MSKCC	GRCh37	1	241671983	241671983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	1040	241	0	ENST00000366560.3:c.658G>T	p.Ala220Ser	p.A220S	ENST00000366560	NM_000143.3	220	Gca/Tca																																																																														
INPP4A	0	MSKCC	GRCh37	2	99156016	99156016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1282	746	377	1	ENST00000074304.5:c.696G>T	p.Met232Ile	p.M232I	ENST00000074304	NM_001134224.1	232	atG/atT																																																																														
MST1R	0	MSKCC	GRCh37	3	49936307	49936307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	723	380	0	ENST00000296474.3:c.1541G>T	p.Gly514Val	p.G514V	ENST00000296474	NM_002447.2	514	gGg/gTg																																																																														
ATR	0	MSKCC	GRCh37	3	142217605	142217605	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1277	91	216	0	ENST00000350721.4:c.5392A>G	p.Thr1798Ala	p.T1798A	ENST00000350721	NM_001184.3	1798	Aca/Gca																																																																														
ESR1	0	MSKCC	GRCh37	6	152415612	152415612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	605	281	0	ENST00000206249.3:c.1462C>T	p.His488Tyr	p.H488Y	ENST00000206249	NM_000125.3	488	Cac/Tac																																																																														
MLL3	0	MSKCC	GRCh37	7	151945082	151945082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	55	102	0	ENST00000262189.6:c.2437C>A	p.Pro813Thr	p.P813T	ENST00000262189	NM_170606.2	813	Cca/Aca																																																																														
MLL2	0	MSKCC	GRCh37	12	49425254	49425254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	535	288	0	ENST00000301067.7:c.13234C>T	p.Gln4412Ter	p.Q4412*	ENST00000301067	NM_003482.3	4412	Caa/Taa																																																																														
FLT1	0	MSKCC	GRCh37	13	28959085	28959085	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	1872	340	0	ENST00000282397.4:c.2053A>G	p.Asn685Asp	p.N685D	ENST00000282397	NM_002019.4	685	Aat/Gat																																																																														
RB1	0	MSKCC	GRCh37	13	49039339	49039339	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	838	379	0	ENST00000267163.4:c.2326-2A>T		p.X776_splice	ENST00000267163	NM_000321.2	776																																																																															
AXIN1	0	MSKCC	GRCh37	16	343663	343663	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1514	934	495	1	ENST00000262320.3:c.2011G>T	p.Glu671Ter	p.E671*	ENST00000262320	NM_003502.3	671	Gag/Tag																																																																														
SMAD2	0	MSKCC	GRCh37	18	45423094	45423094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	474	187	1	ENST00000262160.6:c.34G>T	p.Val12Leu	p.V12L	ENST00000262160	NM_005901.5	12	Gtg/Ttg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385147	41385147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	586	310	0	ENST00000373198.4:c.814G>T	p.Asp272Tyr	p.D272Y	ENST00000373198	NM_133170.3	272	Gat/Tat																																																																														
BCOR	0	MSKCC	GRCh37	X	39911598	39911598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1334	661	309	0	ENST00000378444.4:c.5032C>G	p.Arg1678Gly	p.R1678G	ENST00000378444	NM_001123385.1	1678	Cgc/Ggc																																																																														
BCOR	0	MSKCC	GRCh37	X	39921416	39921416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	521	284	0	ENST00000378444.4:c.4404G>T	p.Gln1468His	p.Q1468H	ENST00000378444	NM_001123385.1	1468	caG/caT																																																																														
AR	0	MSKCC	GRCh37	X	66766430	66766430	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	213	115	0	ENST00000374690.3:c.1442A>T	p.Tyr481Phe	p.Y481F	ENST00000374690	NM_000044.3	481	tAc/tTc																																																																														
XIAP	0	MSKCC	GRCh37	X	123026617	123026617	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs112760249		P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1696	870	491	0	ENST00000355640.3:c.1093A>G	p.Arg365Gly	p.R365G	ENST00000355640		365	Aga/Gga																																																																														
BCOR	0	MSKCC	GRCh37	X	39932538	39932539	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0009730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	622	408	0	ENST00000378444.4:c.2060_2061delinsAG	p.Pro687Gln	p.P687Q	ENST00000378444	NM_001123385.1	687	cCC/cAG																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	478	273	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	471	508	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225687	26225687	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2063	844	1130	0	ENST00000360408.1:c.305T>G	p.Val102Gly	p.V102G	ENST00000360408	NM_003532.2	102	gTg/gGg																																																																														
MGA	0	MSKCC	GRCh37	15	42003492	42003492	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	1162	946	0	ENST00000219905.7:c.3029C>G	p.Thr1010Arg	p.T1010R	ENST00000219905	NM_001164273.1	1010	aCa/aGa																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52719115	52719115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	284	422	0	ENST00000322088.6:c.891G>T	p.Glu297Asp	p.E297D	ENST00000322088	NM_014225.5	297	gaG/gaT																																																																														
BLM	0	MSKCC	GRCh37	15	91341426	91341430	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAC	AAAAC	-			P-0009740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	51	526	0	ENST00000355112.3:c.3219_3223del	p.Thr1074ArgfsTer4	p.T1074Rfs*4	ENST00000355112	NM_000057.2	1073	AAAACa/a																																																																														
TP53	0	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	192	258	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																																																														
KIT	0	MSKCC	GRCh37	4	55569915	55569915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	139	289	0	ENST00000288135.5:c.782G>T	p.Ser261Ile	p.S261I	ENST00000288135	NM_000222.2	261	aGc/aTc																																																																														
RASA1	0	MSKCC	GRCh37	5	86637111	86637111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	212	235	2	ENST00000274376.6:c.1022G>A	p.Arg341Gln	p.R341Q	ENST00000274376	NM_002890.2	341	cGg/cAg																																																																														
KDM5A	0	MSKCC	GRCh37	12	394642	394642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	482	419	0	ENST00000399788.2:c.5053G>A	p.Asp1685Asn	p.D1685N	ENST00000399788	NM_001042603.1	1685	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0009757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	230	350	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
SOX17	0	MSKCC	GRCh37	8	55372071	55372071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	51	270	0	ENST00000297316.4:c.761C>T	p.Ala254Val	p.A254V	ENST00000297316	NM_022454.3	254	gCg/gTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971080	21971080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	105	167	1	ENST00000304494.5:c.278C>T	p.Thr93Met	p.T93M	ENST00000304494	NM_000077.4	93	aCg/aTg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971080	21971080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	105	167	1	ENST00000304494.5:c.278C>T	p.Thr93Met	p.T93M	ENST00000304494	NM_000077.4	93	aCg/aTg																																																																														
RNF43	0	MSKCC	GRCh37	17	56436055	56436055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	189	461	0	ENST00000407977.2:c.1082del	p.Pro361LeufsTer58	p.P361Lfs*58	ENST00000407977		361	cCt/ct																																																																														
TP53	0	MSKCC	GRCh37	17	7578525	7578525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	203	355	0	ENST00000269305.4:c.405C>A	p.Cys135Ter	p.C135*	ENST00000269305	NM_001126112.2	135	tgC/tgA																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061208	38061209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	128	222	0	ENST00000250448.2:c.780dup	p.Arg261AlafsTer32	p.R261Afs*32	ENST00000250448	NM_004496.3	260	-/G																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	625	565	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	432	433	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900884	3900884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1650	223	697	0	ENST00000262367.5:c.212C>T	p.Ser71Leu	p.S71L	ENST00000262367	NM_004380.2	71	tCg/tTg																																																																														
TP53	0	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	472	500	0	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
NOTCH2	0	MSKCC	GRCh37	1	120459212	120459212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	198	412	0	ENST00000256646.2:c.6133C>T	p.Leu2045Phe	p.L2045F	ENST00000256646	NM_024408.3	2045	Ctt/Ttt																																																																														
TCEB1	0	MSKCC	GRCh37	8	74868226	74868226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	114	240	0	ENST00000284811.8:c.68C>T	p.Ser23Leu	p.S23L	ENST00000284811		23	tCa/tTa																																																																														
AMER1	0	MSKCC	GRCh37	X	63411990	63411990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1841	207	1119	0	ENST00000330258.3:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000330258	NM_152424.3	393	Gaa/Aaa																																																																														
PLK2	0	MSKCC	GRCh37	5	57754353	57754354	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GACTAAG			P-0009821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	155	450	0	ENST00000274289.3:c.496-5_497dup	p.Met167LeufsTer34	p.M167Lfs*34	ENST00000274289	NM_006622.3	166	tca/tcCTTAGTCa																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	68	273	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
BAP1	8314	MSKCC	GRCh37	3	52442567	52442567	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	235	311	0	ENST00000460680.1:c.178C>T	p.Arg60Ter	p.R60*	ENST00000460680	NM_004656.3	60	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	205	399	0	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg																																																																														
APC	0	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	72	195	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
SPEN	0	MSKCC	GRCh37	1	16255346	16255346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151043425		P-0009838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	343	497	0	ENST00000375759.3:c.2611C>T	p.Arg871Cys	p.R871C	ENST00000375759	NM_015001.2	871	Cgc/Tgc																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	305	503	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
XPO1	0	MSKCC	GRCh37	2	61715899	61715899	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	73	346	0	ENST00000401558.2:c.2030A>G	p.Asp677Gly	p.D677G	ENST00000401558	NM_003400.3	677	gAt/gGt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604717	48604718	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0009854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	117	519	0	ENST00000342988.3:c.1540_1541del	p.Pro514LysfsTer12	p.P514Kfs*12	ENST00000342988	NM_005359.5	513	taCCca/taca																																																																														
KIT	0	MSKCC	GRCh37	4	55593607	55593608	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TCC			P-0009867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1933	1390	658	0	ENST00000288135.5:c.1673_1674insTCC	p.Lys558delinsAsnPro	p.K558delinsNP	ENST00000288135	NM_000222.2	558	aag/aaTCCg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	111	602	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																																																														
SOX17	0	MSKCC	GRCh37	8	55370796	55370796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	103	262	3	ENST00000297316.4:c.98C>T	p.Ala33Val	p.A33V	ENST00000297316	NM_022454.3	33	gCc/gTc																																																																														
FLT1	0	MSKCC	GRCh37	13	28964098	28964098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	57	692	0	ENST00000282397.4:c.1804T>G	p.Tyr602Asp	p.Y602D	ENST00000282397	NM_002019.4	602	Tac/Gac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807986	3807986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	116	488	0	ENST00000262367.5:c.3433G>T	p.Gly1145Trp	p.G1145W	ENST00000262367	NM_004380.2	1145	Ggg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112173889	112173890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAG			P-0009871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	61	509	1	ENST00000257430.4:c.2600_2603dup	p.Glu868AspfsTer45	p.E868Dfs*45	ENST00000257430	NM_000038.5	866	-/ACAG																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114910801	114910802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1722	113	1055	0	ENST00000543371.1:c.920_921insA	p.Ile309HisfsTer19	p.I309Hfs*19	ENST00000543371	NM_001198531.1	307	acg/acAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	31	204	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	119	462	1	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	29	156	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	29	156	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
JAK1	0	MSKCC	GRCh37	1	65335121	65335121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	81	363	1	ENST00000342505.4:c.520C>T	p.Arg174Ter	p.R174*	ENST00000342505	NM_002227.2	174	Cga/Tga																																																																														
MLL2	0	MSKCC	GRCh37	12	49416600	49416600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	80	348	0	ENST00000301067.7:c.16111G>A	p.Glu5371Lys	p.E5371K	ENST00000301067	NM_003482.3	5371	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099397	27099397	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	80	383	0	ENST00000324856.7:c.3634C>T	p.Gln1212Ter	p.Q1212*	ENST00000324856	NM_006015.4	1212	Cag/Tag																																																																														
MTOR	0	MSKCC	GRCh37	1	11184631	11184631	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	106	423	0	ENST00000361445.4:c.6586G>T	p.Glu2196Ter	p.E2196*	ENST00000361445	NM_004958.3	2196	Gag/Tag																																																																														
SPEN	0	MSKCC	GRCh37	1	16199603	16199603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	56	272	0	ENST00000375759.3:c.376G>A	p.Glu126Lys	p.E126K	ENST00000375759	NM_015001.2	126	Gaa/Aaa																																																																														
SPEN	0	MSKCC	GRCh37	1	16242628	16242628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	58	378	1	ENST00000375759.3:c.1249G>A	p.Glu417Lys	p.E417K	ENST00000375759	NM_015001.2	417	Gaa/Aaa																																																																														
ALK	0	MSKCC	GRCh37	2	29416726	29416726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	52	244	0	ENST00000389048.3:c.4227G>C	p.Glu1409Asp	p.E1409D	ENST00000389048	NM_004304.4	1409	gaG/gaC																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155681	56155681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	60	296	0	ENST00000399503.3:c.773C>T	p.Ser258Leu	p.S258L	ENST00000399503	NM_005921.1	258	tCa/tTa																																																																														
NSD1	0	MSKCC	GRCh37	5	176637673	176637673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	76	323	0	ENST00000439151.2:c.2273C>T	p.Ser758Leu	p.S758L	ENST00000439151	NM_022455.4	758	tCa/tTa																																																																														
NSD1	0	MSKCC	GRCh37	5	176639026	176639026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	66	282	0	ENST00000439151.2:c.3626C>T	p.Pro1209Leu	p.P1209L	ENST00000439151	NM_022455.4	1209	cCt/cTt																																																																														
PRDM1	0	MSKCC	GRCh37	6	106547220	106547220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	48	210	0	ENST00000369096.4:c.457G>A	p.Glu153Lys	p.E153K	ENST00000369096	NM_001198.3	153	Gaa/Aaa																																																																														
TSC1	0	MSKCC	GRCh37	9	135771909	135771909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	49	277	0	ENST00000298552.3:c.3208G>A	p.Ala1070Thr	p.A1070T	ENST00000298552	NM_001162426.1	1070	Gcg/Acg																																																																														
GLI1	0	MSKCC	GRCh37	12	57858925	57858925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1681	141	702	0	ENST00000228682.2:c.421C>T	p.His141Tyr	p.H141Y	ENST00000228682	NM_005269.2	141	Cac/Tac																																																																														
MGA	0	MSKCC	GRCh37	15	42028539	42028539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1763	138	667	0	ENST00000219905.7:c.4077C>G	p.Ile1359Met	p.I1359M	ENST00000219905	NM_001164273.1	1359	atC/atG																																																																														
TSC2	0	MSKCC	GRCh37	16	2104389	2104389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1127	80	416	0	ENST00000219476.3:c.429C>G	p.Phe143Leu	p.F143L	ENST00000219476	NM_000548.3	143	ttC/ttG																																																																														
CDH1	0	MSKCC	GRCh37	16	68835733	68835733	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	88	481	0	ENST00000261769.5:c.324A>C	p.Arg108Ser	p.R108S	ENST00000261769	NM_004360.3	108	agA/agC																																																																														
CIC	0	MSKCC	GRCh37	19	42796353	42796353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	85	383	0	ENST00000575354.2:c.3002C>T	p.Ser1001Phe	p.S1001F	ENST00000575354	NM_015125.3	1001	tCc/tTc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46271054	46271054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1601	134	571	0	ENST00000371998.3:c.3178C>T	p.Leu1060Phe	p.L1060F	ENST00000371998		1060	Ctt/Ttt																																																																														
CDH1	0	MSKCC	GRCh37	16	68835740	68835752	+	frameshift_variant	Frame_Shift_Del	DEL	TCCACCAAAGTCA	TCCACCAAAGTCA	-			P-0009897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	82	484	0	ENST00000261769.5:c.331_343del	p.Ser111ArgfsTer2	p.S111Rfs*2	ENST00000261769	NM_004360.3	111	TCCACCAAAGTCAcg/cg																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	40	504	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
ERBB4	0	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	70	492	0	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	76	363	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8100451	8100451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	153	585	0	ENST00000346208.3:c.425C>T	p.Ser142Leu	p.S142L	ENST00000346208		142	tCg/tTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5238951	5238951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	45	330	1	ENST00000357368.4:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000357368	NM_002850.3	610	Cgg/Tgg																																																																														
ERG	0	MSKCC	GRCh37	21	39764312	39764312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	35	304	1	ENST00000288319.7:c.800C>T	p.Thr267Met	p.T267M	ENST00000288319	NM_182918.3	267	aCg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112175527	112175527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	33	314	0	ENST00000257430.4:c.4237delA	p.Met1413TrpfsTer2	p.M1413Wfs*2	ENST00000257430	NM_000038.5	1412	ggA/gg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	95	354	2	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	143	526	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																																																														
MEN1	0	MSKCC	GRCh37	11	64573813	64573813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139936447		P-0009945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	43	250	1	ENST00000337652.1:c.955C>T	p.Arg319Trp	p.R319W	ENST00000337652	NM_130803.2	319	Cgg/Tgg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30686344	30686344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	103	284	0	ENST00000359013.4:c.275G>A	p.Cys92Tyr	p.C92Y	ENST00000359013	NM_001024847.2	92	tGc/tAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	103	422	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	85	241	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
RBM10	0	MSKCC	GRCh37	X	47045979	47045979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	143	432	0	ENST00000329236.7:c.2540G>A	p.Arg847His	p.R847H	ENST00000329236	NM_001204466.1	847	cGc/cAc																																																																														
CBFB	0	MSKCC	GRCh37	16	67070640	67070643	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0010002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	123	416	0	ENST00000412916.2:c.267_270delAAGA	p.Arg90LysfsTer7	p.R90Kfs*7	ENST00000412916		88	ttAGAA/tt																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	36	427	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178951932	178951932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	33	427	1	ENST00000263967.3:c.2987A>G	p.Asn996Ser	p.N996S	ENST00000263967	NM_006218.2	996	aAt/aGt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508554	106508554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	18	150	0	ENST00000359195.3:c.548C>T	p.Pro183Leu	p.P183L	ENST00000359195	NM_002649.2	183	cCg/cTg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575231	48575231	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	34	370	0	ENST00000342988.3:c.424+1G>T		p.X142_splice	ENST00000342988	NM_005359.5	142																																																																															
TP53	0	MSKCC	GRCh37	17	7578209	7578209	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	32	634	0	ENST00000269305.4:c.640del	p.His214IlefsTer33	p.H214Ifs*33	ENST00000269305	NM_001126112.2	214	Cat/at																																																																														
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	268	325	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
MSH6	0	MSKCC	GRCh37	2	48028178	48028178	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	75	493	0	ENST00000234420.5:c.3056T>A	p.Ile1019Lys	p.I1019K	ENST00000234420	NM_000179.2	1019	aTa/aAa																																																																														
NF1	0	MSKCC	GRCh37	17	29557336	29557336	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	46	438	0	ENST00000358273.4:c.3049C>T	p.Gln1017Ter	p.Q1017*	ENST00000358273	NM_001042492.2	1017	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	117	680	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478922	56478922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	186	1022	0	ENST00000267101.3:c.378C>A	p.Asn126Lys	p.N126K	ENST00000267101	NM_001982.3	126	aaC/aaA																																																																														
STAG2	0	MSKCC	GRCh37	X	123164869	123164869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	215	591	1	ENST00000218089.9:c.182G>A	p.Gly61Glu	p.G61E	ENST00000218089	NM_001042749.1	61	gGa/gAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	110	221	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	139	404	0	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																														
TP63	0	MSKCC	GRCh37	3	189587175	189587175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	180	448	0	ENST00000264731.3:c.1192G>A	p.Asp398Asn	p.D398N	ENST00000264731	NM_003722.4	398	Gat/Aat																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502404	186502405	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1947	294	899	0	ENST00000323963.5:c.131_132delTC	p.Leu44ProfsTer10	p.L44Pfs*10	ENST00000323963		43	TCt/t																																																																														
TP63	0	MSKCC	GRCh37	3	189586422	189586422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	120	258	0	ENST00000264731.3:c.1046G>T	p.Gly349Val	p.G349V	ENST00000264731	NM_003722.4	349	gGa/gTa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965677	93965677	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	262	857	0	ENST00000369303.4:c.2251G>C	p.Asp751His	p.D751H	ENST00000369303	NM_004440.3	751	Gat/Cat																																																																														
FLT1	0	MSKCC	GRCh37	13	29004305	29004305	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0010088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	123	413	0	ENST00000282397.4:c.989-1G>C		p.X330_splice	ENST00000282397	NM_002019.4	330																																																																															
GPS2	0	MSKCC	GRCh37	17	7217012	7217012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	369	756	2	ENST00000380728.2:c.509C>T	p.Ala170Val	p.A170V	ENST00000380728		170	gCt/gTt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602939	10602939	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	155	373	0	ENST00000171111.5:c.640-1G>A		p.X214_splice	ENST00000171111	NM_203500.1	214																																																																															
CIC	0	MSKCC	GRCh37	19	42791187	42791187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	77	298	1	ENST00000575354.2:c.247G>A	p.Glu83Lys	p.E83K	ENST00000575354	NM_015125.3	83	Gaa/Aaa																																																																														
ERCC2	0	MSKCC	GRCh37	19	45860609	45860609	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	259	659	0	ENST00000391945.4:c.1398C>G	p.Ile466Met	p.I466M	ENST00000391945	NM_000400.3	466	atC/atG																																																																														
TOP1	0	MSKCC	GRCh37	20	39713132	39713132	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	180	558	0	ENST00000361337.2:c.538G>C	p.Asp180His	p.D180H	ENST00000361337	NM_003286.2	180	Gat/Cat																																																																														
U2AF1	0	MSKCC	GRCh37	21	44524454	44524454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	176	438	0	ENST00000291552.4:c.103C>G	p.Arg35Gly	p.R35G	ENST00000291552	NM_006758.2	35	Cgg/Ggg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25457232	25457232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	393	442	0	ENST00000264709.3:c.2655G>T	p.Arg885Ser	p.R885S	ENST00000264709	NM_175629.2	885	agG/agT																																																																														
GATA3	0	MSKCC	GRCh37	10	8097830	8097830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1745	132	771	0	ENST00000346208.3:c.212C>T	p.Thr71Met	p.T71M	ENST00000346208		71	aCg/aTg																																																																														
ATM	0	MSKCC	GRCh37	11	108098551	108098551	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	153	368	0	ENST00000278616.4:c.121A>T	p.Lys41Ter	p.K41*	ENST00000278616	NM_000051.3	41	Aaa/Taa																																																																														
ATM	0	MSKCC	GRCh37	11	108206609	108206609	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	204	716	0	ENST00000278616.4:c.8189A>T	p.Gln2730Leu	p.Q2730L	ENST00000278616	NM_000051.3	2730	cAg/cTg																																																																														
CHEK1	0	MSKCC	GRCh37	11	125503145	125503145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	115	707	0	ENST00000428830.2:c.512T>C	p.Leu171Ser	p.L171S	ENST00000428830	NM_001114121.2	171	tTa/tCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	335	517	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514940	103514940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	117	439	0	ENST00000355739.4:c.1441G>T	p.Val481Leu	p.V481L	ENST00000355739	NM_000123.3	481	Gtg/Ttg																																																																														
TSHR	0	MSKCC	GRCh37	14	81606188	81606188	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	105	629	0	ENST00000298171.2:c.858T>G	p.Phe286Leu	p.F286L	ENST00000298171	NM_000369.2	286	ttT/ttG																																																																														
RBM10	0	MSKCC	GRCh37	X	47038895	47038895	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0010126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	134	162	0	ENST00000329236.7:c.670+1G>C		p.X224_splice	ENST00000329236	NM_001204466.1	224																																																																															
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	283	429	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
MYD88	0	MSKCC	GRCh37	3	38180178	38180178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	291	407	0	ENST00000396334.3:c.26C>T	p.Pro9Leu	p.P9L	ENST00000396334	NM_002468.4	9	cCa/cTa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178403	56178403	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	152	434	0	ENST00000399503.3:c.3376A>G	p.Thr1126Ala	p.T1126A	ENST00000399503	NM_005921.1	1126	Aca/Gca																																																																														
INHBA	0	MSKCC	GRCh37	7	41729297	41729297	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1652	466	792	0	ENST00000242208.4:c.1232T>C	p.Ile411Thr	p.I411T	ENST00000242208	NM_002192.2	411	aTc/aCc																																																																														
HGF	0	MSKCC	GRCh37	7	81392057	81392057	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	191	484	0	ENST00000222390.5:c.220T>A	p.Cys74Ser	p.C74S	ENST00000222390	NM_000601.4	74	Tgt/Agt																																																																														
RET	0	MSKCC	GRCh37	10	43607612	43607612	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	349	516	2	ENST00000355710.3:c.1588G>T	p.Glu530Ter	p.E530*	ENST00000355710	NM_020975.4	530	Gag/Tag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943764	9943764	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	214	308	0	ENST00000330684.3:c.1177T>C	p.Tyr393His	p.Y393H	ENST00000330684	NM_001134407.1	393	Tac/Cac																																																																														
NSD1	0	MSKCC	GRCh37	5	176637121	176637122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	131	288	0	ENST00000439151.2:c.1727dup	p.Asn576LysfsTer8	p.N576Kfs*8	ENST00000439151	NM_022455.4	574	gga/ggAa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956645	93956646	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0010136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1254	320	850	1	ENST00000369303.4:c.2590_2591delinsCT	p.Gly864Leu	p.G864L	ENST00000369303	NM_004440.3	864	GGc/CTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	114	599	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	166	872	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
APC	0	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	115	388	1	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	95	524	3	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55154999	55154999	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1283	186	795	0	ENST00000257290.5:c.2708C>G	p.Ser903Cys	p.S903C	ENST00000257290	NM_006206.4	903	tCt/tGt																																																																														
EIF4E	0	MSKCC	GRCh37	4	99802246	99802246	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	17	97	0	ENST00000280892.6:c.647G>C	p.Gly216Ala	p.G216A	ENST00000280892	NM_001130678.1	216	gGt/gCt																																																																														
MED12	0	MSKCC	GRCh37	X	70340928	70340928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1593	122	900	1	ENST00000374080.3:c.661C>T	p.Pro221Ser	p.P221S	ENST00000374080		221	Ccc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	437	337	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
IRS1	0	MSKCC	GRCh37	2	227662224	227662224	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	356	415	1	ENST00000305123.5:c.1231C>T	p.Arg411Ter	p.R411*	ENST00000305123	NM_005544.2	411	Cga/Tga																																																																														
SETD2	0	MSKCC	GRCh37	3	47162528	47162528	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			27	526	362	0	ENST00000409792.3:c.3598G>T	p.Glu1200Ter	p.E1200*	ENST00000409792	NM_014159.6	1200	Gaa/Taa																																																																														
MLL2	0	MSKCC	GRCh37	12	49427939	49427939	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	711	481	0	ENST00000301067.7:c.10651A>T	p.Lys3551Ter	p.K3551*	ENST00000301067	NM_003482.3	3551	Aaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	35	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	74	417	0	ENST00000269305.4:c.721T>C	p.Ser241Pro	p.S241P	ENST00000269305	NM_001126112.2	241	Tcc/Ccc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437573	56437574	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	56	403	0	ENST00000407977.2:c.888dup	p.Asn297Ter	p.N297*	ENST00000407977		296	-/T																																																																														
MET	0	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	138	351	2	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
ARID1A	0	MSKCC	GRCh37	1	27105754	27105756	+	frameshift_variant	Frame_Shift_Ins	INS	GCC	GCC	ACCT			P-0010210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	221	681	0	ENST00000324856.7:c.5365_5367delinsACCT	p.Ala1789ThrfsTer13	p.A1789Tfs*13	ENST00000324856	NM_006015.4	1789	GCC/ACCT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	67	526	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	90	630	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	75	440	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	74	554	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717715	89717716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1393832338		P-0010217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	142	358	0	ENST00000371953.3:c.741dup	p.Pro248ThrfsTer5	p.P248Tfs*5	ENST00000371953	NM_000314.4	247	tta/ttAa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244664	41244664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	104	660	1	ENST00000357654.3:c.2884G>A	p.Glu962Lys	p.E962K	ENST00000357654	NM_007294.3	962	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	101	319	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	96	492	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PTPRS	0	MSKCC	GRCh37	19	5210482	5210482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs147647579		P-0010223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	36	426	0	ENST00000357368.4:c.5485C>T	p.Arg1829Trp	p.R1829W	ENST00000357368	NM_002850.3	1829	Cgg/Tgg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71050185	71050185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	32	313	0	ENST00000318789.4:c.1000G>C	p.Asp334His	p.D334H	ENST00000318789	NM_032682.5	334	Gac/Cac																																																																														
PTPN11	0	MSKCC	GRCh37	12	112892380	112892380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	86	625	0	ENST00000351677.2:c.538G>A	p.Asp180Asn	p.D180N	ENST00000351677	NM_002834.3	180	Gac/Aac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936096	+	missense_variant	Missense_Mutation	DNP	AG	AG	CC			P-0010240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	116	257	0	ENST00000263967.3:c.1637_1638delinsCC	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAG/cCC																																																																														
NTRK1	0	MSKCC	GRCh37	1	156838408	156838408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	165	372	0	ENST00000524377.1:c.686T>C	p.Leu229Pro	p.L229P	ENST00000524377	NM_002529.3	229	cTc/cCc																																																																														
AXIN1	0	MSKCC	GRCh37	16	348080	348080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	149	392	0	ENST00000262320.3:c.1426C>A	p.Gln476Lys	p.Q476K	ENST00000262320	NM_003502.3	476	Cag/Aag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44920663	44920664	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0010240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	38	273	0	ENST00000377967.4:c.1425_1425+1dup		p.Q475fs	ENST00000377967	NM_021140.2	475	cag/caGGg																																																																														
TP53	0	MSKCC	GRCh37	17	7576901	7576901	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	134	420	0	ENST00000269305.4:c.945del	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	315	tcT/tc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	159	451	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	196	679	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
APC	0	MSKCC	GRCh37	5	112175548	112175548	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	99	428	0	ENST00000257430.4:c.4260delC	p.Ser1421ValfsTer52	p.S1421Vfs*52	ENST00000257430	NM_000038.5	1419	agC/ag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518262	8518262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	78	394	1	ENST00000356435.5:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000356435		377	Cgc/Tgc																																																																														
EP300	0	MSKCC	GRCh37	22	41531912	41531912	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	149	369	0	ENST00000263253.7:c.1622+2T>C		p.X541_splice	ENST00000263253	NM_001429.3	541																																																																															
SETD2	0	MSKCC	GRCh37	3	47162387	47162387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	52	348	0	ENST00000409792.3:c.3739G>T	p.Asp1247Tyr	p.D1247Y	ENST00000409792	NM_014159.6	1247	Gat/Tat																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982020	93982020	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	81	472	0	ENST00000369303.4:c.1445A>T	p.Glu482Val	p.E482V	ENST00000369303	NM_004440.3	482	gAg/gTg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680634	88680634	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	63	372	0	ENST00000360948.2:c.622+1G>A		p.X208_splice	ENST00000360948	NM_001012338.2	208																																																																															
MET	0	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	73	290	0	ENST00000397752.3:c.3028+2T>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	48	387	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	100	408	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	27	188	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TET1	0	MSKCC	GRCh37	10	70405103	70405103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199844508		P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	41	443	0	ENST00000373644.4:c.2617G>A	p.Val873Ile	p.V873I	ENST00000373644	NM_030625.2	873	Gtt/Att																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	59	162	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	121	412	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	55	303	0	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	102	375	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
CASP8	841	MSKCC	GRCh37	2	202149798	202149799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	56	458	0	ENST00000358485.4:c.1245dup	p.Ile416TyrfsTer8	p.I416Yfs*8	ENST00000358485	NM_001080125.1	413	-/T																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	99	386	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	81	600	4	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872461	35872461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1834	154	803	0	ENST00000216797.5:c.442del	p.Leu148TyrfsTer16	p.L148Yfs*16	ENST00000216797	NM_020529.2	148	Cta/ta																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106562	27106562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1509	129	671	0	ENST00000324856.7:c.6176del	p.Asn2059ThrfsTer76	p.N2059Tfs*76	ENST00000324856	NM_006015.4	2058	gAa/ga																																																																														
KDM6A	0	MSKCC	GRCh37	X	44928976	44928976	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	68	631	0	ENST00000377967.4:c.2080del	p.Ala694LeufsTer21	p.A694Lfs*21	ENST00000377967	NM_021140.2	692	caG/ca																																																																														
VTCN1	0	MSKCC	GRCh37	1	117690401	117690401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	41	347	1	ENST00000369458.3:c.728C>T	p.Ser243Leu	p.S243L	ENST00000369458	NM_024626.3	243	tCg/tTg																																																																														
IKBKE	0	MSKCC	GRCh37	1	206649623	206649623	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	109	325	0	ENST00000367120.3:c.458A>G	p.Tyr153Cys	p.Y153C	ENST00000367120	NM_014002.3	153	tAc/tGc																																																																														
H3F3A	0	MSKCC	GRCh37	1	226253388	226253388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1803734		P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	36	267	0	ENST00000366813.1:c.160C>T	p.Arg54Cys	p.R54C	ENST00000366813		54	Cgt/Tgt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469975	25469975	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	63	335	0	ENST00000264709.3:c.1067A>G	p.Gln356Arg	p.Q356R	ENST00000264709	NM_175629.2	356	cAg/cGg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520241	176520241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	123	385	0	ENST00000292408.4:c.1160C>T	p.Ala387Val	p.A387V	ENST00000292408	NM_213647.1	387	gCc/gTc																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858507	27858507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1381	159	650	1	ENST00000359303.2:c.64G>A	p.Ala22Thr	p.A22T	ENST00000359303	NM_003535.2	22	Gcc/Acc																																																																														
FYN	0	MSKCC	GRCh37	6	112015707	112015707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	85	701	0	ENST00000368678.4:c.1135G>A	p.Glu379Lys	p.E379K	ENST00000368678		379	Gag/Aag																																																																														
ROS1	0	MSKCC	GRCh37	6	117662787	117662787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	19	197	0	ENST00000368508.3:c.4678G>A	p.Ala1560Thr	p.A1560T	ENST00000368508	NM_002944.2	1560	Gca/Aca																																																																														
ABL1	0	MSKCC	GRCh37	9	133738373	133738373	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	49	215	0	ENST00000318560.5:c.773A>C	p.Glu258Ala	p.E258A	ENST00000318560	NM_005157.4	258	gAg/gCg																																																																														
RAD52	0	MSKCC	GRCh37	12	1042175	1042175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	75	425	0	ENST00000358495.3:c.50C>T	p.Ala17Val	p.A17V	ENST00000358495	NM_134424.2	17	gCt/gTt																																																																														
MLL2	0	MSKCC	GRCh37	12	49446707	49446707	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	44	252	0	ENST00000301067.7:c.1103T>G	p.Val368Gly	p.V368G	ENST00000301067	NM_003482.3	368	gTg/gGg																																																																														
TSC2	0	MSKCC	GRCh37	16	2131771	2131771	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	95	357	0	ENST00000219476.3:c.3786A>C	p.Lys1262Asn	p.K1262N	ENST00000219476	NM_000548.3	1262	aaA/aaC																																																																														
TSC2	0	MSKCC	GRCh37	16	2136275	2136275	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	180	494	0	ENST00000219476.3:c.4744A>G	p.Ile1582Val	p.I1582V	ENST00000219476	NM_000548.3	1582	Atc/Gtc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857751	9857751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1396	149	607	0	ENST00000330684.3:c.3650G>A	p.Cys1217Tyr	p.C1217Y	ENST00000330684	NM_001134407.1	1217	tGc/tAc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032525	12032525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	47	344	0	ENST00000353533.5:c.961G>A	p.Val321Met	p.V321M	ENST00000353533	NM_003010.3	321	Gtg/Atg																																																																														
BRD4	0	MSKCC	GRCh37	19	15350322	15350322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	92	367	1	ENST00000263377.2:c.3457A>G	p.Lys1153Glu	p.K1153E	ENST00000263377	NM_058243.2	1153	Aag/Gag																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792458	33792458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1565	150	717	1	ENST00000498907.2:c.863G>A	p.Arg288Gln	p.R288Q	ENST00000498907	NM_004364.3	288	cGg/cAg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164875	36164875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	55	276	1	ENST00000300305.3:c.1000C>T	p.Arg334Cys	p.R334C	ENST00000300305		334	Cgc/Tgc																																																																														
JUN	0	MSKCC	GRCh37	1	59248325	59248325	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	29	78	0	ENST00000371222.2:c.418del	p.Ala140GlnfsTer8	p.A140Qfs*8	ENST00000371222	NM_002228.3	140	Gca/ca																																																																														
FAT1	0	MSKCC	GRCh37	4	187539281	187539282	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	30	458	0	ENST00000441802.2:c.8458_8459del	p.Glu2820LysfsTer7	p.E2820Kfs*7	ENST00000441802	NM_005245.3	2820	GAa/a																																																																														
BTK	0	MSKCC	GRCh37	X	100615679	100615679	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	114	689	3	ENST00000308731.7:c.653del	p.Lys218ArgfsTer11	p.K218Rfs*11	ENST00000308731	NM_000061.2	218	aAg/ag																																																																														
SMO	0	MSKCC	GRCh37	7	128843236	128843237	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	122	389	0	ENST00000249373.3:c.349dup	p.Arg117ProfsTer19	p.R117Pfs*19	ENST00000249373	NM_005631.4	115	gcc/gCcc																																																																														
BCOR	0	MSKCC	GRCh37	X	39932794	39932794	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1570	223	783	0	ENST00000378444.4:c.1805del	p.Pro602ArgfsTer67	p.P602Rfs*67	ENST00000378444	NM_001123385.1	602	cCg/cg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0010308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	156	565	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																														
GATA1	0	MSKCC	GRCh37	X	48650826	48650826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	311	672	0	ENST00000376670.3:c.695A>G	p.His232Arg	p.H232R	ENST00000376670	NM_002049.3	232	cAc/cGc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0010321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	254	489	0	ENST00000269571.5:c.2332_2340dupGGCTCCCCA	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																																																														
SF3B1	0	MSKCC	GRCh37	2	198288672	198288672	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	196	546	0	ENST00000335508.6:c.55C>G	p.Gln19Glu	p.Q19E	ENST00000335508	NM_012433.2	19	Caa/Gaa																																																																														
CDH1	0	MSKCC	GRCh37	16	68847368	68847369	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	153	490	0	ENST00000261769.5:c.1292dup	p.Asn431LysfsTer15	p.N431Kfs*15	ENST00000261769	NM_004360.3	430	-/A																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843538	156843538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	225	434	0	ENST00000524377.1:c.964C>A	p.Leu322Ile	p.L322I	ENST00000524377	NM_002529.3	322	Ctc/Atc																																																																														
SETD2	0	MSKCC	GRCh37	3	47061268	47061268	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	355	762	0	ENST00000409792.3:c.7413A>C	p.Lys2471Asn	p.K2471N	ENST00000409792	NM_014159.6	2471	aaA/aaC																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186504324	186504324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	83	400	2	ENST00000323963.5:c.661G>T	p.Val221Leu	p.V221L	ENST00000323963		221	Gtg/Ttg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0010334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	59	63	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0010334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	59	63	0	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	261	448	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	217	264	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	387	430	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
TET2	0	MSKCC	GRCh37	4	106197101	106197101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	96	229	0	ENST00000380013.4:c.5434G>A	p.Val1812Ile	p.V1812I	ENST00000380013	NM_001127208.2	1812	Gtc/Atc																																																																														
PTEN	0	MSKCC	GRCh37	10	89690814	89690814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	108	216	0	ENST00000371953.3:c.221G>T	p.Arg74Ile	p.R74I	ENST00000371953	NM_000314.4	74	aGa/aTa																																																																														
GLI1	0	MSKCC	GRCh37	12	57864237	57864237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	406	581	0	ENST00000228682.2:c.1714G>A	p.Glu572Lys	p.E572K	ENST00000228682	NM_005269.2	572	Gag/Aag																																																																														
LATS2	0	MSKCC	GRCh37	13	21557619	21557619	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0010357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	141	402	1	ENST00000382592.4:c.2226C>G	p.Tyr742Ter	p.Y742*	ENST00000382592	NM_014572.2	742	taC/taG																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792873	33792873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	30	122	0	ENST00000498907.2:c.448G>A	p.Val150Ile	p.V150I	ENST00000498907	NM_004364.3	150	Gtc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	260	337	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																																																														
APC	0	MSKCC	GRCh37	5	112174386	112174386	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	104	306	0	ENST00000257430.4:c.3095C>G	p.Ser1032Ter	p.S1032*	ENST00000257430	NM_000038.5	1032	tCa/tGa																																																																														
RNF43	0	MSKCC	GRCh37	17	56435858	56435858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	47	344	0	ENST00000407977.2:c.1279C>T	p.His427Tyr	p.H427Y	ENST00000407977		427	Cac/Tac																																																																														
BBC3	0	MSKCC	GRCh37	19	47725035	47725035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	261	720	0	ENST00000449228.1:c.709G>A	p.Val237Ile	p.V237I	ENST00000449228	NM_001127240.2	237	Gtc/Atc																																																																														
JUN	0	MSKCC	GRCh37	1	59248443	59248443	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	217	458	0	ENST00000371222.2:c.300del	p.Lys101ArgfsTer3	p.K101Rfs*3	ENST00000371222	NM_002228.3	100	ccC/cc																																																																														
STK11	0	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	871	490	0	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg																																																																														
JUN	0	MSKCC	GRCh37	1	59248394	59248394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	170	239	0	ENST00000371222.2:c.349G>A	p.Ala117Thr	p.A117T	ENST00000371222	NM_002228.3	117	Gcc/Acc																																																																														
PARK2	0	MSKCC	GRCh37	6	161969996	161969996	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	233	388	1	ENST00000366898.1:c.973C>A	p.Leu325Met	p.L325M	ENST00000366898	NM_004562.2	325	Ctg/Atg																																																																														
MLL	0	MSKCC	GRCh37	11	118370600	118370600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	76	353	0	ENST00000534358.1:c.6130G>A	p.Glu2044Lys	p.E2044K	ENST00000534358	NM_005933.3	2044	Gaa/Aaa																																																																														
MLL	0	MSKCC	GRCh37	11	118373799	118373799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	39	222	0	ENST00000534358.1:c.7192G>A	p.Glu2398Lys	p.E2398K	ENST00000534358	NM_005933.3	2398	Gaa/Aaa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2216751	2216751	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	305	143	0	ENST00000398665.3:c.2395G>T	p.Glu799Ter	p.E799*	ENST00000398665	NM_032482.2	799	Gag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602322	10602322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	895	387	0	ENST00000171111.5:c.1256G>T	p.Gly419Val	p.G419V	ENST00000171111	NM_203500.1	419	gGg/gTg																																																																														
BCOR	0	MSKCC	GRCh37	X	39911573	39911573	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	381	645	0	ENST00000378444.4:c.5057A>G	p.Asn1686Ser	p.N1686S	ENST00000378444	NM_001123385.1	1686	aAc/aGc																																																																														
STAG2	0	MSKCC	GRCh37	X	123200084	123200084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	500	882	3	ENST00000218089.9:c.2156G>T	p.Gly719Val	p.G719V	ENST00000218089	NM_001042749.1	719	gGa/gTa																																																																														
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0010405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	285	160	0	ENST00000412916.2:c.165+1G>C		p.X55_splice	ENST00000412916		55																																																																															
NOTCH2	0	MSKCC	GRCh37	1	120458852	120458852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	519	394	0	ENST00000256646.2:c.6493A>G	p.Thr2165Ala	p.T2165A	ENST00000256646	NM_024408.3	2165	Aca/Gca																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566716	212566716	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	440	387	0	ENST00000342788.4:c.1465G>T	p.Asp489Tyr	p.D489Y	ENST00000342788	NM_005235.2	489	Gac/Tac																																																																														
SOX17	0	MSKCC	GRCh37	8	55372356	55372356	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	276	186	0	ENST00000297316.4:c.1046G>C	p.Ser349Thr	p.S349T	ENST00000297316	NM_022454.3	349	aGt/aCt																																																																														
PAX5	0	MSKCC	GRCh37	9	37002656	37002656	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	403	366	0	ENST00000358127.4:c.593A>G	p.Lys198Arg	p.K198R	ENST00000358127	NM_001280556.1	198	aAg/aGg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139407501	139407501	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1504	122	347	0	ENST00000277541.6:c.2439C>A	p.Tyr813Ter	p.Y813*	ENST00000277541	NM_017617.3	813	taC/taA																																																																														
TET1	0	MSKCC	GRCh37	10	70405457	70405457	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	321	305	0	ENST00000373644.4:c.2971A>T	p.Thr991Ser	p.T991S	ENST00000373644	NM_030625.2	991	Aca/Tca																																																																														
MLL2	0	MSKCC	GRCh37	12	49428414	49428414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	44	310	0	ENST00000301067.7:c.10391G>A	p.Gly3464Glu	p.G3464E	ENST00000301067	NM_003482.3	3464	gGg/gAg																																																																														
RNF43	0	MSKCC	GRCh37	17	56437567	56437567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	512	304	0	ENST00000407977.2:c.895G>A	p.Val299Met	p.V299M	ENST00000407977		299	Gtg/Atg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78867632	78867632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	834	393	0	ENST00000306801.3:c.2368G>T	p.Ala790Ser	p.A790S	ENST00000306801	NM_020761.2	790	Gcc/Tcc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790128	40790128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	277	169	0	ENST00000373198.4:c.2603C>A	p.Pro868His	p.P868H	ENST00000373198	NM_133170.3	868	cCc/cAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862847	9862847	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	438	362	0	ENST00000330684.3:c.2456del	p.Gly819AlafsTer69	p.G819Afs*69	ENST00000330684	NM_001134407.1	819	gGc/gc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729561	41729564	+	missense_variant	Missense_Mutation	ONP	TTAC	TTAC	ATAG			P-0010405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	853	843	2	ENST00000242208.4:c.965_968delinsCTAT	p.Cys322_Lys323delinsSerMet	p.C322_K323delinsSM	ENST00000242208	NM_002192.2	322	tGTAAg/tCTATg																																																																														
DAXX	0	MSKCC	GRCh37	6	33286533	33286533	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0010445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	143	239	0	ENST00000374542.5:c.2210C>G	p.Ser737Ter	p.S737*	ENST00000374542	NM_001141970.1	737	tCa/tGa																																																																														
TSC2	0	MSKCC	GRCh37	16	2100405	2100406	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0010445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	289	515	1	ENST00000219476.3:c.143_144del	p.Leu48GlnfsTer18	p.L48Qfs*18	ENST00000219476	NM_000548.3	48	cTG/c																																																																														
MEN1	0	MSKCC	GRCh37	11	64575101	64575103	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0010445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	186	338	0	ENST00000337652.1:c.719_721del	p.Glu240del	p.E240del	ENST00000337652	NM_130803.2	240	gAGGtg/gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	172	430	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																																																														
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	190	204	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																																																														
FLT4	0	MSKCC	GRCh37	5	180051057	180051057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	59	285	0	ENST00000261937.6:c.1426C>T	p.Arg476Trp	p.R476W	ENST00000261937	NM_182925.4	476	Cgg/Tgg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710652	114710652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1523	594	748	4	ENST00000543371.1:c.137C>A	p.Ser46Ter	p.S46*	ENST00000543371	NM_001198531.1	46	tCg/tAg																																																																														
DICER1	0	MSKCC	GRCh37	14	95562432	95562432	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	306	337	2	ENST00000343455.3:c.4825A>C	p.Asn1609His	p.N1609H	ENST00000343455	NM_177438.2	1609	Aat/Cat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821594	72821644	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCACTGCCACC	GCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCACTGCCACC	-			P-0010512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	569	164	1	ENST00000268489.5:c.10531_10581del	p.Gly3511_Gly3527del	p.G3511_G3527del	ENST00000268489	NM_006885.3	3511	GGTGGCAGTGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																														
APC	0	MSKCC	GRCh37	5	112174134	112174135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TATG			P-0010512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	223	425	0	ENST00000257430.4:c.2844_2847dup	p.Pro950TyrfsTer14	p.P950Yfs*14	ENST00000257430	NM_000038.5	948	tct/tcTATGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	106	190	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52637555	52637555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	284	585	0	ENST00000394830.3:c.2761C>T	p.Arg921Ter	p.R921*	ENST00000394830	NM_018313.4	921	Cga/Tga																																																																														
CASP8	0	MSKCC	GRCh37	2	202131498	202131498	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	149	239	0	ENST00000358485.4:c.466C>G	p.Gln156Glu	p.Q156E	ENST00000358485	NM_001080125.1	156	Caa/Gaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094386	27094386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	204	346	0	ENST00000324856.7:c.3094G>A	p.Glu1032Lys	p.E1032K	ENST00000324856	NM_006015.4	1032	Gag/Aag																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138407755	138407755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1390	282	428	3	ENST00000289153.2:c.2098C>T	p.Arg700Trp	p.R700W	ENST00000289153	NM_006219.2	700	Cgg/Tgg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185146709	185146709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	247	304	0	ENST00000265026.3:c.340G>A	p.Glu114Lys	p.E114K	ENST00000265026	NM_004721.4	114	Gaa/Aaa																																																																														
TP63	0	MSKCC	GRCh37	3	189456534	189456534	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	266	356	1	ENST00000264731.3:c.295C>T	p.Gln99Ter	p.Q99*	ENST00000264731	NM_003722.4	99	Cag/Tag																																																																														
KIT	0	MSKCC	GRCh37	4	55603399	55603399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	279	505	0	ENST00000288135.5:c.2755C>G	p.Gln919Glu	p.Q919E	ENST00000288135	NM_000222.2	919	Caa/Gaa																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045954	26045954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1281	1059	805	0	ENST00000540144.1:c.316G>A	p.Glu106Lys	p.E106K	ENST00000540144	NM_003531.2	106	Gaa/Aaa																																																																														
PMS2	0	MSKCC	GRCh37	7	6045613	6045613	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	113	151	0	ENST00000265849.7:c.73C>T	p.Gln25Ter	p.Q25*	ENST00000265849	NM_000535.5	25	Cag/Tag																																																																														
RAD51	0	MSKCC	GRCh37	15	40998487	40998487	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	67	432	0	ENST00000267868.3:c.338T>C	p.Leu113Pro	p.L113P	ENST00000267868	NM_002875.4	113	cTt/cCt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88799200	88799200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	126	523	2	ENST00000360948.2:c.185C>T	p.Ser62Leu	p.S62L	ENST00000360948	NM_001012338.2	62	tCa/tTa																																																																														
BRD4	0	MSKCC	GRCh37	19	15374297	15374297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	335	543	2	ENST00000263377.2:c.1275G>A	p.Met425Ile	p.M425I	ENST00000263377	NM_058243.2	425	atG/atA																																																																														
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	532	517	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
MST1R	0	MSKCC	GRCh37	3	49929190	49929190	+	splice_donor_variant	Splice_Site	SNP	C	C	T	rs55856544		P-0010529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	808	920	3	ENST00000296474.3:c.3352+1G>A		p.X1118_splice	ENST00000296474	NM_002447.2	1118																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178927993	178927993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	82	298	0	ENST00000263967.3:c.1271G>T	p.Trp424Leu	p.W424L	ENST00000263967	NM_006218.2	424	tGg/tTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187539487	187539487	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	378	515	0	ENST00000441802.2:c.8253delT	p.Phe2751LeufsTer2	p.F2751Lfs*2	ENST00000441802	NM_005245.3	2751	ttT/tt																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871020	12871033	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTTGCCCGAGTT	AGCTTGCCCGAGTT	-			P-0010565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	276	358	0	ENST00000228872.4:c.247_260delAGCTTGCCCGAGTT	p.Ser83LeufsTer37	p.S83Lfs*37	ENST00000228872	NM_004064.3	83	AGCTTGCCCGAGTTc/c																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060665	38060665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	104	715	1	ENST00000250448.2:c.1324G>T	p.Ala442Ser	p.A442S	ENST00000250448	NM_004496.3	442	Gcc/Tcc																																																																														
CDK12	0	MSKCC	GRCh37	17	37627209	37627209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	68	435	0	ENST00000447079.4:c.1125del	p.Ser376ValfsTer60	p.S376Vfs*60	ENST00000447079	NM_015083.1	375	tCc/tc																																																																														
CDK12	0	MSKCC	GRCh37	17	37618657	37618657	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	105	476	0	ENST00000447079.4:c.333del	p.Arg112ValfsTer12	p.R112Vfs*12	ENST00000447079	NM_015083.1	111	caT/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	547	485	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178469	56178469	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	224	392	2	ENST00000399503.3:c.3442A>G	p.Thr1148Ala	p.T1148A	ENST00000399503	NM_005921.1	1148	Act/Gct																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222160	2222160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1471	117	626	0	ENST00000398665.3:c.2992C>G	p.Leu998Val	p.L998V	ENST00000398665	NM_032482.2	998	Ctt/Gtt																																																																														
RBM10	0	MSKCC	GRCh37	X	47045710	47045710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	430	587	1	ENST00000329236.7:c.2357G>T	p.Arg786Leu	p.R786L	ENST00000329236	NM_001204466.1	786	cGg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	631	526	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	614	576	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715721	30715721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	278	439	0	ENST00000359013.4:c.1454G>A	p.Arg485His	p.R485H	ENST00000359013	NM_001024847.2	485	cGc/cAc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212288969	212288969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148791072		P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	344	623	0	ENST00000342788.4:c.2777C>T	p.Thr926Met	p.T926M	ENST00000342788	NM_005235.2	926	aCg/aTg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066725	94066725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1357	560	936	1	ENST00000369303.4:c.1034C>T	p.Thr345Ile	p.T345I	ENST00000369303	NM_004440.3	345	aCc/aTc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	169	206	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	169	206	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																														
NF1	0	MSKCC	GRCh37	17	29527462	29527462	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76015786		P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	211	413	0	ENST00000358273.4:c.911G>A	p.Arg304Gln	p.R304Q	ENST00000358273	NM_001042492.2	304	cGa/cAa																																																																														
APC	0	MSKCC	GRCh37	5	112175259	112175260	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0010627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	347	445	0	ENST00000257430.4:c.3968_3969delTT	p.Val1323AlafsTer8	p.V1323Afs*8	ENST00000257430	NM_000038.5	1323	gTT/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	311	528	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			321	324	489	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	120	431	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			297	351	514	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																																																														
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	449	804	0	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																														
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			494	192	657	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
ATM	0	MSKCC	GRCh37	11	108129749	108129749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	432	626	1	ENST00000278616.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000278616	NM_000051.3	805	Cga/Tga																																																																														
CARD11	0	MSKCC	GRCh37	7	2953076	2953076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	464	752	1	ENST00000396946.4:c.2864G>A	p.Gly955Asp	p.G955D	ENST00000396946	NM_032415.4	955	gGc/gAc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528558	89528558	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	115	352	1	ENST00000336596.2:c.2858A>T	p.Lys953Met	p.K953M	ENST00000336596	NM_005233.5	953	aAg/aTg																																																																														
PLK2	0	MSKCC	GRCh37	5	57751931	57751931	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55768901		P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	260	619	0	ENST00000274289.3:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000274289	NM_006622.3	436	Gaa/Aaa																																																																														
GLI1	0	MSKCC	GRCh37	12	57858552	57858552	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143548857		P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			782	260	682	2	ENST00000228682.2:c.290C>T	p.Thr97Met	p.T97M	ENST00000228682	NM_005269.2	97	aCg/aTg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46266423	46266423	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	144	574	0	ENST00000371998.3:c.2408T>A	p.Ile803Asn	p.I803N	ENST00000371998		803	aTt/aAt																																																																														
APC	0	MSKCC	GRCh37	5	112175645	112175645	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	117	370	0	ENST00000257430.4:c.4354del	p.Val1452TyrfsTer21	p.V1452Yfs*21	ENST00000257430	NM_000038.5	1452	Gta/ta																																																																														
MED12	0	MSKCC	GRCh37	X	70339931	70339931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	31	569	1	ENST00000374080.3:c.464G>T	p.Arg155Leu	p.R155L	ENST00000374080		155	cGg/cTg																																																																														
BIRC3	0	MSKCC	GRCh37	11	102196062	102196062	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			355	41	375	1	ENST00000263464.3:c.822G>T	p.Glu274Asp	p.E274D	ENST00000263464	NM_001165.4	274	gaG/gaT																																																																														
PALB2	0	MSKCC	GRCh37	16	23646921	23646921	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	38	718	2	ENST00000261584.4:c.946C>A	p.Pro316Thr	p.P316T	ENST00000261584	NM_024675.3	316	Ccc/Acc																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182662958	182662958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	28	439	0	ENST00000292782.4:c.704C>A	p.Ala235Glu	p.A235E	ENST00000292782	NM_020640.2	235	gCa/gAa																																																																														
RAD21	0	MSKCC	GRCh37	8	117859844	117859844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	44	395	1	ENST00000297338.2:c.1791C>A	p.Phe597Leu	p.F597L	ENST00000297338	NM_006265.2	597	ttC/ttA																																																																														
MED12	0	MSKCC	GRCh37	X	70339940	70339940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			577	41	566	1	ENST00000374080.3:c.473G>T	p.Trp158Leu	p.W158L	ENST00000374080		158	tGg/tTg																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074279	8074279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	95	489	0	ENST00000377482.5:c.380C>A	p.Thr127Asn	p.T127N	ENST00000377482	NM_018948.3	127	aCc/aAc																																																																														
MUTYH	0	MSKCC	GRCh37	1	45799242	45799242	+	intron_variant	Intron	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			610	55	492	0	ENST00000372115.3:c.158-9C>A		p.*53*	ENST00000372115	NM_001048171.1																																																																																
DDR2	0	MSKCC	GRCh37	1	162745954	162745954	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	41	403	0	ENST00000367921.3:c.2077C>T	p.Gln693Ter	p.Q693*	ENST00000367921	NM_006182.2	693	Caa/Taa																																																																														
MSI1	0	MSKCC	GRCh37	12	120795697	120795697	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			645	46	487	0	ENST00000257552.2:c.456C>A	p.Phe152Leu	p.F152L	ENST00000257552	NM_002442.3	152	ttC/ttA																																																																														
LATS2	0	MSKCC	GRCh37	13	21562792	21562792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	31	529	0	ENST00000382592.4:c.1127C>A	p.Ala376Asp	p.A376D	ENST00000382592	NM_014572.2	376	gCc/gAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832067	72832067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	22	607	1	ENST00000268489.5:c.4514C>A	p.Pro1505Gln	p.P1505Q	ENST00000268489	NM_006885.3	1505	cCa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578472	7578472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			578	14	819	1	ENST00000269305.4:c.458C>A	p.Pro153His	p.P153H	ENST00000269305	NM_001126112.2	153	cCc/cAc																																																																														
IRS1	0	MSKCC	GRCh37	2	227659804	227659804	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			446	25	381	0	ENST00000305123.5:c.3651C>A	p.Ser1217Arg	p.S1217R	ENST00000305123	NM_005544.2	1217	agC/agA																																																																														
NCOA3	0	MSKCC	GRCh37	20	46275831	46275831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	82	595	1	ENST00000371998.3:c.3267G>T	p.Glu1089Asp	p.E1089D	ENST00000371998		1089	gaG/gaT																																																																														
GSK3B	0	MSKCC	GRCh37	3	119812236	119812236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			629	46	523	0	ENST00000316626.5:c.46C>A	p.Pro16Thr	p.P16T	ENST00000316626		16	Ccg/Acg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1918616	1918616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			369	25	578	0	ENST00000382891.5:c.779G>T	p.Arg260Leu	p.R260L	ENST00000382891	NM_133335.3	260	cGc/cTc																																																																														
KDR	0	MSKCC	GRCh37	4	55968091	55968091	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			426	135	517	0	ENST00000263923.4:c.2239A>T	p.Lys747Ter	p.K747*	ENST00000263923	NM_002253.2	747	Aaa/Taa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32168754	32168754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			701	46	654	1	ENST00000375023.3:c.4169C>A	p.Ser1390Tyr	p.S1390Y	ENST00000375023	NM_004557.3	1390	tCc/tAc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106523532	106523532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010680-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	35	365	0	ENST00000359195.3:c.2684C>T	p.Thr895Ile	p.T895I	ENST00000359195	NM_002649.2	895	aCa/aTa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	109	260	0				ENST00000310581	NM_198253.2																																																																																
HRAS	0	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	239	495	1	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
MAPK1	0	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	241	502	2	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																																																														
ROS1	0	MSKCC	GRCh37	6	117704520	117704520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	270	551	0	ENST00000368508.3:c.2456C>T	p.Ser819Phe	p.S819F	ENST00000368508	NM_002944.2	819	tCc/tTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056334	27056334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	86	195	0	ENST00000324856.7:c.1330G>T	p.Gly444Cys	p.G444C	ENST00000324856	NM_006015.4	444	Ggc/Tgc																																																																														
SETD2	0	MSKCC	GRCh37	3	47103717	47103717	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	327	614	0	ENST00000409792.3:c.6229C>T	p.Arg2077Ter	p.R2077*	ENST00000409792	NM_014159.6	2077	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247211	153247211	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	297	496	0	ENST00000281708.4:c.1591G>T	p.Glu531Ter	p.E531*	ENST00000281708	NM_033632.3	531	Gaa/Taa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149504349	149504349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	163	489	3	ENST00000261799.4:c.1853C>T	p.Thr618Met	p.T618M	ENST00000261799	NM_002609.3	618	aCg/aTg																																																																														
ABL1	0	MSKCC	GRCh37	9	133730264	133730264	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	218	389	1	ENST00000318560.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000318560	NM_005157.4	110	tgG/tgA																																																																														
RET	0	MSKCC	GRCh37	10	43606700	43606700	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	238	617	0	ENST00000355710.3:c.1309A>T	p.Asn437Tyr	p.N437Y	ENST00000355710	NM_020975.4	437	Aac/Tac																																																																														
KDM5A	0	MSKCC	GRCh37	12	430180	430180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	291	542	0	ENST00000399788.2:c.2522G>T	p.Ser841Ile	p.S841I	ENST00000399788	NM_001042603.1	841	aGc/aTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46123921	46123921	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	119	266	0	ENST00000334344.6:c.186+1G>A		p.X62_splice	ENST00000334344	NM_152641.2	62																																																																															
CREBBP	0	MSKCC	GRCh37	16	3778882	3778882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	116	281	0	ENST00000262367.5:c.6166G>A	p.Val2056Met	p.V2056M	ENST00000262367	NM_004380.2	2056	Gtg/Atg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272015	15272015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	67	172	0	ENST00000263388.2:c.6424G>T	p.Gly2142Cys	p.G2142C	ENST00000263388	NM_000435.2	2142	Ggc/Tgc																																																																														
SRC	0	MSKCC	GRCh37	20	36026178	36026178	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	245	618	0	ENST00000358208.4:c.780G>T	p.Lys260Asn	p.K260N	ENST00000358208		260	aaG/aaT																																																																														
FAT1	0	MSKCC	GRCh37	4	187629114	187629115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	267	422	0	ENST00000441802.2:c.1867dup	p.Val623GlyfsTer53	p.V623Gfs*53	ENST00000441802	NM_005245.3	623	gta/gGta																																																																														
IDH2	0	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	129	617	0	ENST00000330062.3:c.514A>G	p.Arg172Gly	p.R172G	ENST00000330062	NM_002168.2	172	Agg/Ggg																																																																														
ABL1	0	MSKCC	GRCh37	9	133760448	133760448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	31	463	2	ENST00000318560.5:c.2771G>A	p.Gly924Glu	p.G924E	ENST00000318560	NM_005157.4	924	gGg/gAg																																																																														
ERG	0	MSKCC	GRCh37	21	39755766	39755766	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	26	284	0	ENST00000288319.7:c.999A>T	p.Glu333Asp	p.E333D	ENST00000288319	NM_182918.3	333	gaA/gaT																																																																														
BAP1	0	MSKCC	GRCh37	3	52442085	52442085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	110	447	0	ENST00000460680.1:c.264del	p.Asn89ThrfsTer9	p.N89Tfs*9	ENST00000460680	NM_004656.3	88	ccC/cc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8517914	8517914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	149	541	1	ENST00000356435.5:c.1477C>A	p.Leu493Met	p.L493M	ENST00000356435		493	Ctg/Atg																																																																														
MLL2	0	MSKCC	GRCh37	12	49426785	49426785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	200	219	0	ENST00000301067.7:c.11703G>T	p.Gln3901His	p.Q3901H	ENST00000301067	NM_003482.3	3901	caG/caT																																																																														
TP53	0	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0010711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	333	399	0	ENST00000269305.4:c.281C>G	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tGa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533038	63533038	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	445	609	0	ENST00000307078.5:c.1856T>C	p.Val619Ala	p.V619A	ENST00000307078	NM_004655.3	619	gTc/gCc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15303191	15303191	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	377	479	0	ENST00000263388.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000263388	NM_000435.2	113	Cga/Tga																																																																														
DIS3	0	MSKCC	GRCh37	13	73343049	73343050	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GC	GC	AA			P-0010711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	125	175	0	ENST00000377767.4:c.1756_1757delinsTT	p.Ala586Leu	p.A586L	ENST00000377767	NM_014953.3	586	GCa/TTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	159	397	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	181	395	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	67	255	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	228	355	0	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15296139	15296139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	230	449	2	ENST00000263388.2:c.2225C>T	p.Pro742Leu	p.P742L	ENST00000263388	NM_000435.2	742	cCg/cTg																																																																														
ARAF	0	MSKCC	GRCh37	X	47426420	47426420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	223	290	0	ENST00000377045.4:c.763C>T	p.Arg255Trp	p.R255W	ENST00000377045	NM_001654.4	255	Cgg/Tgg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412892	63412892	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	363	285	0	ENST00000330258.3:c.275del	p.Lys92ArgfsTer8	p.K92Rfs*8	ENST00000330258	NM_152424.3	92	aAg/ag																																																																														
RB1	0	MSKCC	GRCh37	13	48955381	48955381	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0010740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	165	148	0	ENST00000267163.4:c.1499-2A>T		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																															
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	280	306	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
GSK3B	0	MSKCC	GRCh37	3	119666195	119666195	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	131	225	0	ENST00000316626.5:c.286C>T	p.Arg96Ter	p.R96*	ENST00000316626		96	Cga/Tga																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165982	118165982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	178	308	0	ENST00000369448.3:c.492C>A	p.Asn164Lys	p.N164K	ENST00000369448	NM_017709.3	164	aaC/aaA																																																																														
FAT1	0	MSKCC	GRCh37	4	187584629	187584629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	1026	600	0	ENST00000441802.2:c.3404A>G	p.Asn1135Ser	p.N1135S	ENST00000441802	NM_005245.3	1135	aAt/aGt																																																																														
ETV1	0	MSKCC	GRCh37	7	14027755	14027755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	270	387	2	ENST00000405192.2:c.89G>T	p.Arg30Met	p.R30M	ENST00000405192	NM_001163147.1	30	aGg/aTg																																																																														
MET	0	MSKCC	GRCh37	7	116381044	116381044	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	628	542	0	ENST00000397752.3:c.1666T>C	p.Trp556Arg	p.W556R	ENST00000397752	NM_000245.2	556	Tgg/Cgg																																																																														
TSC1	0	MSKCC	GRCh37	9	135771827	135771827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	154	614	0	ENST00000298552.3:c.3290G>A	p.Arg1097His	p.R1097H	ENST00000298552	NM_001162426.1	1097	cGt/cAt																																																																														
RBM10	0	MSKCC	GRCh37	X	47045686	47045686	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	397	168	0	ENST00000329236.7:c.2333T>A	p.Leu778Gln	p.L778Q	ENST00000329236	NM_001204466.1	778	cTg/cAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76776367	76776367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	366	284	1	ENST00000373344.5:c.7099G>T	p.Ala2367Ser	p.A2367S	ENST00000373344	NM_000489.3	2367	Gcc/Tcc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095590	178095592	+	frameshift_variant	Frame_Shift_Del	DEL	ATT	ATT	G			P-0010740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	342	565	0	ENST00000397062.3:c.1739_1741delinsC	p.Glu580AlafsTer18	p.E580Afs*18	ENST00000397062	NM_006164.4	580	gAATac/gCac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	295	514	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0010790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	305	695	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44945176	44945178	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0010790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	238	483	0	ENST00000377967.4:c.3505_3507del	p.Val1169del	p.V1169del	ENST00000377967	NM_021140.2	1167	tTTGtt/ttt																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121018	29121018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	66	620	1	ENST00000328354.6:c.539G>A	p.Arg180His	p.R180H	ENST00000328354	NM_007194.3	180	cGc/cAc																																																																														
FLT4	0	MSKCC	GRCh37	5	180057054	180057054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	81	580	2	ENST00000261937.6:c.565C>T	p.Arg189Trp	p.R189W	ENST00000261937	NM_182925.4	189	Cgg/Tgg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88679810	88679810	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	113	540	0	ENST00000360948.2:c.653del	p.Asn218ThrfsTer2	p.N218Tfs*2	ENST00000360948	NM_001012338.2	218	aAc/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	213	470	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MED12	0	MSKCC	GRCh37	X	70342150	70342150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	57	428	1	ENST00000374080.3:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000374080		401	cCg/cTg																																																																														
ATM	0	MSKCC	GRCh37	11	108115514	108115514	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	24	380	0	ENST00000278616.4:c.663-1G>A		p.X221_splice	ENST00000278616	NM_000051.3	221																																																																															
IRS2	0	MSKCC	GRCh37	13	110434967	110434967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	34	637	0	ENST00000375856.3:c.3434G>T	p.Arg1145Leu	p.R1145L	ENST00000375856	NM_003749.2	1145	cGc/cTc																																																																														
AR	0	MSKCC	GRCh37	X	66766603	66766603	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	19	350	0	ENST00000374690.3:c.1615C>A	p.Arg539Ser	p.R539S	ENST00000374690	NM_000044.3	539	Cgt/Agt																																																																														
SPEN	0	MSKCC	GRCh37	1	16255772	16255772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	74	375	0	ENST00000375759.3:c.3037C>T	p.Arg1013Cys	p.R1013C	ENST00000375759	NM_015001.2	1013	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2204	262	1157	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156534	55156534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	84	509	0	ENST00000257290.5:c.2935C>T	p.Arg979Cys	p.R979C	ENST00000257290	NM_006206.4	979	Cgc/Tgc																																																																														
IL7R	0	MSKCC	GRCh37	5	35875645	35875645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201449880		P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	140	442	0	ENST00000303115.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000303115	NM_002185.3	278	Gat/Aat																																																																														
APC	0	MSKCC	GRCh37	5	112154703	112154703	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	81	346	0	ENST00000257430.4:c.974A>G	p.His325Arg	p.H325R	ENST00000257430	NM_000038.5	325	cAt/cGt																																																																														
MLL3	0	MSKCC	GRCh37	7	151846197	151846197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	104	512	0	ENST00000262189.6:c.12815C>T	p.Thr4272Met	p.T4272M	ENST00000262189	NM_170606.2	4272	aCg/aTg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900329	101900329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	90	567	0	ENST00000374994.4:c.763C>T	p.Arg255Cys	p.R255C	ENST00000374994	NM_004612.2	255	Cgt/Tgt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139417329	139417329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	83	369	2	ENST00000277541.6:c.715G>A	p.Val239Ile	p.V239I	ENST00000277541	NM_017617.3	239	Gtc/Atc																																																																														
TRAF2	0	MSKCC	GRCh37	9	139820192	139820192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1332	244	1090	1	ENST00000247668.2:c.1345C>T	p.Pro449Ser	p.P449S	ENST00000247668	NM_021138.3	449	Ccc/Tcc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	49	138	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827708	72827708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	195	1063	0	ENST00000268489.5:c.8873T>C	p.Leu2958Pro	p.L2958P	ENST00000268489	NM_006885.3	2958	cTg/cCg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15950397	15950397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	114	546	0	ENST00000268712.3:c.6547C>T	p.Arg2183Cys	p.R2183C	ENST00000268712	NM_006311.3	2183	Cgc/Tgc																																																																														
NF1	0	MSKCC	GRCh37	17	29553546	29553546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	76	336	1	ENST00000358273.4:c.2095G>A	p.Asp699Asn	p.D699N	ENST00000358273	NM_001042492.2	699	Gac/Aac																																																																														
PTPRS	0	MSKCC	GRCh37	19	5231558	5231558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	66	366	2	ENST00000357368.4:c.1918C>T	p.Arg640Cys	p.R640C	ENST00000357368	NM_002850.3	640	Cgc/Tgc																																																																														
INSR	0	MSKCC	GRCh37	19	7166284	7166284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	86	730	1	ENST00000302850.5:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000302850	NM_000208.2	581	cGg/cAg																																																																														
PAK7	0	MSKCC	GRCh37	20	9523319	9523319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	81	755	1	ENST00000353224.5:c.1918G>A	p.Glu640Lys	p.E640K	ENST00000353224	NM_177990.2	640	Gag/Aag																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42861473	42861473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	166	672	1	ENST00000398585.3:c.397G>A	p.Val133Met	p.V133M	ENST00000398585	NM_001135099.1	133	Gtg/Atg																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841145	15841145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1580	179	923	4	ENST00000307771.7:c.1229G>A	p.Arg410His	p.R410H	ENST00000307771	NM_005089.3	410	cGc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720741	89720741	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	10	62	0	ENST00000371953.3:c.892del	p.Gln298LysfsTer9	p.Q298Kfs*9	ENST00000371953	NM_000314.4	298	Caa/aa																																																																														
BLM	0	MSKCC	GRCh37	15	91293075	91293075	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	92	363	0	ENST00000355112.3:c.582del	p.Phe194LeufsTer11	p.F194Lfs*11	ENST00000355112	NM_000057.2	193	Ttt/tt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	203	527	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1343	221	1461	3	ENST00000301030.4:c.4382_4384delAGA	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	126	503	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106885	27106906	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGCTGTGGTACTGCTGGCCA	ATGGCTGTGGTACTGCTGGCCA	-			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	104	479	0	ENST00000324856.7:c.6497_6518del	p.Met2166ThrfsTer27	p.M2166Tfs*27	ENST00000324856	NM_006015.4	2166	ATGGCTGTGGTACTGCTGGCCAac/ac																																																																														
AXL	0	MSKCC	GRCh37	19	41737102	41737102	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	91	986	0	ENST00000301178.4:c.685del	p.Arg229ValfsTer21	p.R229Vfs*21	ENST00000301178	NM_021913.4	228	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	127	609	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720812	89720814	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	69	138	0	ENST00000371953.3:c.966_968del	p.Lys322del	p.K322del	ENST00000371953	NM_000314.4	321	acAAAa/aca																																																																														
AR	0	MSKCC	GRCh37	X	66765666	66765667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	105	898	0	ENST00000374690.3:c.683dup	p.Thr229HisfsTer6	p.T229Hfs*6	ENST00000374690	NM_000044.3	226	-/G																																																																														
MED12	0	MSKCC	GRCh37	X	70356416	70356416	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	83	798	0	ENST00000374080.3:c.5313del	p.Lys1771AsnfsTer44	p.K1771Nfs*44	ENST00000374080		1771	Aaa/aa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	283	208	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0010838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	587	399	2	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821373	72821373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	347	699	0	ENST00000268489.5:c.10802C>T	p.Ser3601Leu	p.S3601L	ENST00000268489	NM_006885.3	3601	tCg/tTg																																																																														
PMS2	0	MSKCC	GRCh37	7	6026697	6026697	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	442	505	2	ENST00000265849.7:c.1699C>T	p.Gln567Ter	p.Q567*	ENST00000265849	NM_000535.5	567	Cag/Tag																																																																														
SMO	0	MSKCC	GRCh37	7	128850816	128850816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1527	149	534	2	ENST00000249373.3:c.1663C>A	p.Gln555Lys	p.Q555K	ENST00000249373	NM_005631.4	555	Cag/Aag																																																																														
MED12	0	MSKCC	GRCh37	X	70338701	70338701	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0010838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	690	817	0	ENST00000374080.3:c.97G>C	p.Glu33Gln	p.E33Q	ENST00000374080		33	Gag/Cag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929062	44929081	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGAAACATATTGACGGTG	CAGGAAACATATTGACGGTG	-			P-0010838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	683	794	1	ENST00000377967.4:c.2163_2182del	p.Gly722Ter	p.G722*	ENST00000377967	NM_021140.2	721	tCAGGAAACATATTGACGGTG/t																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	307	414	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0010848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	277	335	0				ENST00000310581	NM_198253.2																																																																																
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0010848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	30	110	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
SPEN	0	MSKCC	GRCh37	1	16262712	16262712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	159	302	0	ENST00000375759.3:c.9977C>T	p.Pro3326Leu	p.P3326L	ENST00000375759	NM_015001.2	3326	cCc/cTc																																																																														
JAK1	0	MSKCC	GRCh37	1	65310530	65310530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	254	476	0	ENST00000342505.4:c.2158C>T	p.Leu720Phe	p.L720F	ENST00000342505	NM_002227.2	720	Ctc/Ttc																																																																														
MLL3	0	MSKCC	GRCh37	7	151884550	151884550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	292	425	1	ENST00000262189.6:c.4805C>T	p.Ser1602Leu	p.S1602L	ENST00000262189	NM_170606.2	1602	tCa/tTa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8507309	8507309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	231	553	0	ENST00000356435.5:c.1669G>A	p.Gly557Arg	p.G557R	ENST00000356435		557	Gga/Aga																																																																														
ERCC5	0	MSKCC	GRCh37	13	103518061	103518061	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	195	410	1	ENST00000355739.4:c.1999C>T	p.Gln667Ter	p.Q667*	ENST00000355739	NM_000123.3	667	Caa/Taa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730805	40730805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	211	404	0	ENST00000373198.4:c.3730G>A	p.Asp1244Asn	p.D1244N	ENST00000373198	NM_133170.3	1244	Gac/Aac																																																																														
JAK1	0	MSKCC	GRCh37	1	65301150	65301150	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	228	444	1	ENST00000342505.4:c.3298del	p.Thr1100GlnfsTer6	p.T1100Qfs*6	ENST00000342505	NM_002227.2	1100	Aca/ca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107022	27107023	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0010848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	176	338	0	ENST00000324856.7:c.6633_6634delinsTT	p.Gln2212Ter	p.Q2212*	ENST00000324856	NM_006015.4	2211	agCCag/agTTag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15961254	15961255	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	204	423	0	ENST00000268712.3:c.6134_6135delinsTT	p.Thr2045Ile	p.T2045I	ENST00000268712	NM_006311.3	2045	aCC/aTT																																																																														
RAD51C	0	MSKCC	GRCh37	17	56811537	56811538	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0010848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	225	466	0	ENST00000337432.4:c.1085_1086delinsTT	p.Ser362Phe	p.S362F	ENST00000337432	NM_058216.2	362	tCC/tTT																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	165	553	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
NSD1	0	MSKCC	GRCh37	5	176638912	176638912	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111638717		P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	184	615	1	ENST00000439151.2:c.3512G>A	p.Arg1171His	p.R1171H	ENST00000439151	NM_022455.4	1171	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	178	550	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MGA	0	MSKCC	GRCh37	15	42054529	42054529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	196	769	0	ENST00000219905.7:c.7713G>T	p.Leu2571Phe	p.L2571F	ENST00000219905	NM_001164273.1	2571	ttG/ttT																																																																														
TSC2	0	MSKCC	GRCh37	16	2124306	2124306	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	217	664	0	ENST00000219476.3:c.2461A>T	p.Lys821Ter	p.K821*	ENST00000219476	NM_000548.3	821	Aag/Tag																																																																														
CTCF	0	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	44	669	2	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	209	642	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
MGA	0	MSKCC	GRCh37	15	42042574	42042574	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	426	816	0	ENST00000219905.7:c.6770del	p.Pro2257LeufsTer78	p.P2257Lfs*78	ENST00000219905	NM_001164273.1	2257	Cct/ct																																																																														
PRDM1	0	MSKCC	GRCh37	6	106534448	106534448	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	44	550	0	ENST00000369096.4:c.24del	p.Lys8AsnfsTer17	p.K8Nfs*17	ENST00000369096	NM_001198.3	7	gAa/ga																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	55	791	3	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
MLL2	0	MSKCC	GRCh37	12	49434074	49434074	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	35	322	0	ENST00000301067.7:c.7479del	p.Phe2494SerfsTer49	p.F2494Sfs*49	ENST00000301067	NM_003482.3	2493	ggG/gg																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056314	26056314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	260	470	0	ENST00000343677.2:c.343G>A	p.Glu115Lys	p.E115K	ENST00000343677	NM_005319.3	115	Gaa/Aaa																																																																														
MDC1	0	MSKCC	GRCh37	6	30672165	30672165	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	217	765	0	ENST00000376406.3:c.4795T>G	p.Cys1599Gly	p.C1599G	ENST00000376406	NM_014641.2	1599	Tgc/Ggc																																																																														
CARD11	0	MSKCC	GRCh37	7	2966412	2966412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1259	393	853	1	ENST00000396946.4:c.1768G>T	p.Asp590Tyr	p.D590Y	ENST00000396946	NM_032415.4	590	Gac/Tac																																																																														
ERCC2	0	MSKCC	GRCh37	19	45855864	45855864	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	56	571	0	ENST00000391945.4:c.1946A>G	p.Asn649Ser	p.N649S	ENST00000391945	NM_000400.3	649	aAt/aGt																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186504262	186504606	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGCTACAACATAATTTTCTCTTTTTAAGGTTGTGTTGCTTTCTGCCACAATGCCAACTGATGTGTTGGAAGTGACCAAAAAATTCATGAGAGATCCAATTCGAATTCTGGTGAAAAAGGAAGAATTGACCCTTGAAGGAATCAAACAGTTTTATATTAATGTTGAGAGAGAGGTAACTGTCTGATTGTTAGACATTATTTTACCTTCTTGTATAAGCACTGTGCTAAAATTGCAGACACTAGGACCATGTCTTGGTTTTTGCAATAATGCTAGCAGAGTACACACAAGAAGAAAAGTAACAGCACTAGATTGTAAAGACTGGGGTGGACCTCTTTCTTAATGTC	GTGCTACAACATAATTTTCTCTTTTTAAGGTTGTGTTGCTTTCTGCCACAATGCCAACTGATGTGTTGGAAGTGACCAAAAAATTCATGAGAGATCCAATTCGAATTCTGGTGAAAAAGGAAGAATTGACCCTTGAAGGAATCAAACAGTTTTATATTAATGTTGAGAGAGAGGTAACTGTCTGATTGTTAGACATTATTTTACCTTCTTGTATAAGCACTGTGCTAAAATTGCAGACACTAGGACCATGTCTTGGTTTTTGCAATAATGCTAGCAGAGTACACACAAGAAGAAAAGTAACAGCACTAGATTGTAAAGACTGGGGTGGACCTCTTTCTTAATGTC	-			P-0010912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	41	254	0	ENST00000323963.5:c.628-29_771+172del		p.X210_splice	ENST00000323963		210																																																																															
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	230	750	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59857642	59857642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1866	136	493	0	ENST00000259008.2:c.1915C>G	p.His639Asp	p.H639D	ENST00000259008	NM_032043.2	639	Cat/Gat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	79	341	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	126	551	3	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	128	340	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	19	100	3	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	138	591	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	111	278	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	99	406	1	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
CASP8	0	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	79	513	0	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161689	56161689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	83	483	1	ENST00000399503.3:c.1186C>T	p.Arg396Cys	p.R396C	ENST00000399503	NM_005921.1	396	Cgt/Tgt																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	67	367	5	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
SPEN	0	MSKCC	GRCh37	1	16260803	16260803	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150899650		P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	69	427	1	ENST00000375759.3:c.8068G>A	p.Val2690Met	p.V2690M	ENST00000375759	NM_015001.2	2690	Gtg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	157	568	1	ENST00000269305.4:c.800G>T	p.Arg267Leu	p.R267L	ENST00000269305	NM_001126112.2	267	cGg/cTg																																																																														
PGR	0	MSKCC	GRCh37	11	100998607	100998607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	110	609	1	ENST00000325455.5:c.1195C>T	p.Arg399Cys	p.R399C	ENST00000325455	NM_001202474.3	399	Cgc/Tgc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46739410	46739410	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144207599		P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	70	305	0	ENST00000371975.4:c.1601G>A	p.Arg534His	p.R534H	ENST00000371975	NM_003579.3	534	cGt/cAt																																																																														
JAK1	0	MSKCC	GRCh37	1	65310454	65310454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	102	478	1	ENST00000342505.4:c.2234C>T	p.Thr745Met	p.T745M	ENST00000342505	NM_002227.2	745	aCg/aTg																																																																														
SETD2	0	MSKCC	GRCh37	3	47165981	47165981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	80	383	0	ENST00000409792.3:c.145G>A	p.Val49Ile	p.V49I	ENST00000409792	NM_014159.6	49	Gtt/Att																																																																														
TP63	0	MSKCC	GRCh37	3	189526170	189526170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	99	475	0	ENST00000264731.3:c.434C>T	p.Ala145Val	p.A145V	ENST00000264731	NM_003722.4	145	gCg/gTg																																																																														
CSF1R	0	MSKCC	GRCh37	5	149439369	149439369	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	59	404	1	ENST00000286301.3:c.2026C>T	p.Arg676Ter	p.R676*	ENST00000286301	NM_005211.3	676	Cga/Tga																																																																														
FLT4	0	MSKCC	GRCh37	5	180052945	180052945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	89	427	1	ENST00000261937.6:c.1345G>A	p.Gly449Arg	p.G449R	ENST00000261937	NM_182925.4	449	Ggg/Agg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956667	93956667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	340	682	1	ENST00000369303.4:c.2569G>A	p.Ala857Thr	p.A857T	ENST00000369303	NM_004440.3	857	Gca/Aca																																																																														
ARID1B	0	MSKCC	GRCh37	6	157521939	157521939	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	155	391	1	ENST00000346085.5:c.4211A>G	p.Tyr1404Cys	p.Y1404C	ENST00000346085	NM_020732.3	1404	tAc/tGc																																																																														
MLL3	0	MSKCC	GRCh37	7	151864452	151864452	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145072739		P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	49	254	2	ENST00000262189.6:c.9529C>T	p.Arg3177Cys	p.R3177C	ENST00000262189	NM_170606.2	3177	Cgt/Tgt																																																																														
SYK	0	MSKCC	GRCh37	9	93629423	93629423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	166	454	3	ENST00000375746.1:c.857C>T	p.Ala286Val	p.A286V	ENST00000375746	NM_001174167.1	286	gCg/gTg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98231134	98231134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	54	266	1	ENST00000331920.6:c.2149G>A	p.Asp717Asn	p.D717N	ENST00000331920	NM_000264.3	717	Gac/Aac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399309	139399309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	111	451	0	ENST00000277541.6:c.4834G>A	p.Gly1612Ser	p.G1612S	ENST00000277541	NM_017617.3	1612	Ggc/Agc																																																																														
EGFL7	0	MSKCC	GRCh37	9	139563082	139563082	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	142	621	0	ENST00000308874.7:c.154T>A	p.Phe52Ile	p.F52I	ENST00000308874		52	Ttc/Atc																																																																														
TSHR	0	MSKCC	GRCh37	14	81609486	81609486	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	112	519	0	ENST00000298171.2:c.1084G>T	p.Glu362Ter	p.E362*	ENST00000298171	NM_000369.2	362	Gag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29663825	29663825	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	140	502	0	ENST00000358273.4:c.6320T>A	p.Val2107Asp	p.V2107D	ENST00000358273	NM_001042492.2	2107	gTt/gAt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78919554	78919554	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	32	355	0	ENST00000306801.3:c.3113T>A	p.Ile1038Asn	p.I1038N	ENST00000306801	NM_020761.2	1038	aTc/aAc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2207621	2207621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	157	664	1	ENST00000398665.3:c.905C>T	p.Ser302Leu	p.S302L	ENST00000398665	NM_032482.2	302	tCg/tTg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31019447	31019447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	66	349	0	ENST00000375687.4:c.944A>G	p.His315Arg	p.H315R	ENST00000375687	NM_015338.5	315	cAt/cGt																																																																														
U2AF1	0	MSKCC	GRCh37	21	44513220	44513220	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	44	186	0	ENST00000291552.4:c.715C>T	p.Arg239Ter	p.R239*	ENST00000291552	NM_006758.2	239	Cga/Tga																																																																														
NF2	0	MSKCC	GRCh37	22	30090766	30090766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	123	637	1	ENST00000338641.4:c.1763G>A	p.Arg588Gln	p.R588Q	ENST00000338641	NM_000268.3	588	cGa/cAa																																																																														
MLL3	0	MSKCC	GRCh37	7	151851386	151851386	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	193	550	0	ENST00000262189.6:c.12105del	p.Ile4036SerfsTer47	p.I4036Sfs*47	ENST00000262189	NM_170606.2	4035	ccC/cc																																																																														
SMAD2	4087	MSKCC	GRCh37	18	45374949	45374952	+	frameshift_variant	Frame_Shift_Del	DEL	AGTG	AGTG	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	76	372	0	ENST00000262160.6:c.891_894del	p.Thr298Ter	p.T298*	ENST00000262160	NM_005901.5	297	ctCACT/ct																																																																														
AMER1	0	MSKCC	GRCh37	X	63412940	63412940	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	151	382	0	ENST00000330258.3:c.227del	p.Gly76AspfsTer24	p.G76Dfs*24	ENST00000330258	NM_152424.3	76	gGa/ga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66230872	66230873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	78	445	0	ENST00000273854.3:c.2098dup	p.Arg700LysfsTer11	p.R700Kfs*11	ENST00000273854	NM_004439.5	700	aga/aAga																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182683411	182683411	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	73	357	0	ENST00000292782.4:c.134del	p.Phe45SerfsTer12	p.F45Sfs*12	ENST00000292782	NM_020640.2	45	tTc/tc																																																																														
MLL2	0	MSKCC	GRCh37	12	49426027	49426027	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	73	460	0	ENST00000301067.7:c.12461del	p.Gly4154AlafsTer7	p.G4154Afs*7	ENST00000301067	NM_003482.3	4154	gGc/gc																																																																														
LATS2	26524	MSKCC	GRCh37	13	21563349	21563349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	218	723	0	ENST00000382592.4:c.570del	p.Tyr191ThrfsTer49	p.Y191Tfs*49	ENST00000382592	NM_014572.2	190	ccC/cc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	35	321	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0010932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	33	953	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	28	618	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	361	325	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15995300	15995300	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	669	494	0	ENST00000268712.3:c.2893A>T	p.Lys965Ter	p.K965*	ENST00000268712	NM_006311.3	965	Aaa/Taa																																																																														
AMER1	0	MSKCC	GRCh37	X	63410405	63410405	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	518	642	0	ENST00000330258.3:c.2762T>C	p.Leu921Pro	p.L921P	ENST00000330258	NM_152424.3	921	cTg/cCg																																																																														
GATA3	0	MSKCC	GRCh37	10	8097821	8097822	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	316	487	0	ENST00000346208.3:c.204dup	p.Arg69GlnfsTer234	p.R69Qfs*234	ENST00000346208		68	gtc/gtCc																																																																														
LATS2	0	MSKCC	GRCh37	13	21549237	21549237	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1362	107	1023	0	ENST00000382592.4:c.3039T>A	p.Asp1013Glu	p.D1013E	ENST00000382592	NM_014572.2	1013	gaT/gaA																																																																														
CDK12	0	MSKCC	GRCh37	17	37627625	37627625	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	57	625	0	ENST00000447079.4:c.1540del	p.Thr514LeufsTer96	p.T514Lfs*96	ENST00000447079	NM_015083.1	514	Act/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	178	406	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	116	275	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	370	709	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
FAT1	0	MSKCC	GRCh37	4	187630194	187630194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	169	337	0	ENST00000441802.2:c.788C>T	p.Ser263Leu	p.S263L	ENST00000441802	NM_005245.3	263	tCa/tTa																																																																														
TET1	0	MSKCC	GRCh37	10	70432654	70432654	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	112	389	0	ENST00000373644.4:c.4676G>A	p.Arg1559His	p.R1559H	ENST00000373644	NM_030625.2	1559	cGt/cAt																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368203	45368203	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	394	476	0	ENST00000262160.6:c.1399T>C	p.Ser467Pro	p.S467P	ENST00000262160	NM_005901.5	467	Tca/Cca																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589553	67589579	+	inframe_deletion	In_Frame_Del	DEL	AAGATAATATTGAAGCTGTAGGGAAAA	AAGATAATATTGAAGCTGTAGGGAAAA	-			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	65	242	0	ENST00000274335.5:c.1318_1344del	p.Asp440_Lys448del	p.D440_K448del	ENST00000274335		439	gAAGATAATATTGAAGCTGTAGGGAAAAaa/gaa																																																																														
APC	0	MSKCC	GRCh37	5	112174095	112174096	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	174	419	0	ENST00000257430.4:c.2805_2806del	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tAC/t																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457291	67457292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	216	497	0	ENST00000327367.4:c.266dup	p.Cys89TrpfsTer22	p.C89Wfs*22	ENST00000327367	NM_005902.3	89	tgc/tGgc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412362	63412362	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AT			P-0010985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	279	352	0	ENST00000330258.3:c.805delinsAT	p.His269IlefsTer9	p.H269Ifs*9	ENST00000330258	NM_152424.3	269	Cat/ATat																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	101	622	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																														
CDK4	0	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	151	449	0	ENST00000257904.6:c.71G>A	p.Arg24His	p.R24H	ENST00000257904	NM_000075.3	24	cGt/cAt																																																																														
FLT1	0	MSKCC	GRCh37	13	28885814	28885814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	93	604	0	ENST00000282397.4:c.3548C>T	p.Thr1183Ile	p.T1183I	ENST00000282397	NM_002019.4	1183	aCa/aTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	320	424	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187510329	187510329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	168	238	0	ENST00000441802.2:c.13184C>T	p.Pro4395Leu	p.P4395L	ENST00000441802	NM_005245.3	4395	cCg/cTg																																																																														
IL7R	0	MSKCC	GRCh37	5	35867563	35867563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	592	169	0	ENST00000303115.3:c.377T>C	p.Ile126Thr	p.I126T	ENST00000303115	NM_002185.3	126	aTa/aCa																																																																														
FLT4	0	MSKCC	GRCh37	5	180050984	180050984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	149	599	0	ENST00000261937.6:c.1499C>T	p.Pro500Leu	p.P500L	ENST00000261937	NM_182925.4	500	cCc/cTc																																																																														
CARD11	0	MSKCC	GRCh37	7	2963931	2963931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	359	525	0	ENST00000396946.4:c.1876G>C	p.Glu626Gln	p.E626Q	ENST00000396946	NM_032415.4	626	Gag/Cag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8492861	8492861	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	60	338	0	ENST00000356435.5:c.2467+1G>T		p.X823_splice	ENST00000356435		823																																																																															
TBX3	0	MSKCC	GRCh37	12	115112128	115112128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	244	471	0	ENST00000257566.3:c.1612G>T	p.Gly538Cys	p.G538C	ENST00000257566	NM_016569.3	538	Ggc/Tgc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434172	121434172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	169	398	1	ENST00000257555.6:c.1063G>T	p.Gly355Cys	p.G355C	ENST00000257555		355	Ggc/Tgc																																																																														
DICER1	0	MSKCC	GRCh37	14	95569794	95569794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	311	309	0	ENST00000343455.3:c.3939G>T	p.Glu1313Asp	p.E1313D	ENST00000343455	NM_177438.2	1313	gaG/gaT																																																																														
ERCC4	0	MSKCC	GRCh37	16	14021929	14021929	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	99	298	0	ENST00000311895.7:c.629A>T	p.Glu210Val	p.E210V	ENST00000311895	NM_005236.2	210	gAa/gTa																																																																														
NF1	0	MSKCC	GRCh37	17	29685517	29685517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	170	229	0	ENST00000358273.4:c.7990A>G	p.Lys2664Glu	p.K2664E	ENST00000358273	NM_001042492.2	2664	Aag/Gag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942703	44942703	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	284	343	0	ENST00000377967.4:c.3285-2A>T		p.X1095_splice	ENST00000377967	NM_021140.2	1095																																																																															
ARAF	0	MSKCC	GRCh37	X	47430798	47430798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	83	601	3	ENST00000377045.4:c.1763G>A	p.Arg588His	p.R588H	ENST00000377045	NM_001654.4	588	cGc/cAc																																																																														
AR	0	MSKCC	GRCh37	X	66765917	66765917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	320	466	0	ENST00000374690.3:c.929C>T	p.Ser310Phe	p.S310F	ENST00000374690	NM_000044.3	310	tCc/tTc																																																																														
MED12	0	MSKCC	GRCh37	X	70340937	70340937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	324	511	1	ENST00000374080.3:c.670C>A	p.His224Asn	p.H224N	ENST00000374080		224	Cat/Aat																																																																														
RB1	0	MSKCC	GRCh37	13	48953753	48953762	+	frameshift_variant	Frame_Shift_Del	DEL	GTATTACCGA	GTATTACCGA	-			P-0011016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	131	243	0	ENST00000267163.4:c.1359_1368del	p.Tyr453Ter	p.Y453*	ENST00000267163	NM_000321.2	452	ttGTATTACCGA/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	337	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GATA1	0	MSKCC	GRCh37	X	48650397	48650397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	315	343	0	ENST00000376670.3:c.367G>T	p.Asp123Tyr	p.D123Y	ENST00000376670	NM_002049.3	123	Gat/Tat																																																																														
GNA11	0	MSKCC	GRCh37	19	3118944	3118944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	282	635	2	ENST00000078429.4:c.628C>T	p.Arg210Trp	p.R210W	ENST00000078429	NM_002067.2	210	Cgg/Tgg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55124984	55124984	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1293	563	726	0	ENST00000257290.5:c.49G>A	p.Gly17Arg	p.G17R	ENST00000257290	NM_006206.4	17	Ggg/Agg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94124424	94124424	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	157	671	1	ENST00000369303.4:c.159T>A	p.Asn53Lys	p.N53K	ENST00000369303	NM_004440.3	53	aaT/aaA																																																																														
RAD21	0	MSKCC	GRCh37	8	117869691	117869691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1566	246	641	0	ENST00000297338.2:c.503G>A	p.Arg168His	p.R168H	ENST00000297338	NM_006265.2	168	cGt/cAt																																																																														
WT1	0	MSKCC	GRCh37	11	32456398	32456398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	192	412	2	ENST00000332351.3:c.494C>T	p.Ser165Phe	p.S165F	ENST00000332351	NM_024426.4	165	tCc/tTc																																																																														
ATM	0	MSKCC	GRCh37	11	108205768	108205768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	292	364	0	ENST00000278616.4:c.8083G>T	p.Gly2695Cys	p.G2695C	ENST00000278616	NM_000051.3	2695	Ggt/Tgt																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134105	41134105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	336	763	3	ENST00000379561.5:c.1523G>A	p.Gly508Asp	p.G508D	ENST00000379561	NM_002015.3	508	gGc/gAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47044713	47044713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	252	278	4	ENST00000329236.7:c.1879G>T	p.Glu627Ter	p.E627*	ENST00000329236	NM_001204466.1	627	Gag/Tag																																																																														
AKT3	0	MSKCC	GRCh37	1	243858967	243858968	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	304	488	0	ENST00000263826.5:c.97_98delinsAT	p.Gly33Ile	p.G33I	ENST00000263826	NM_005465.4	33	GGc/ATc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94124427	94124428	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0011036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	161	684	2	ENST00000369303.4:c.155_156delinsAA	p.Pro52Gln	p.P52Q	ENST00000369303	NM_004440.3	52	cCC/cAA																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107008	27107008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	245	373	2	ENST00000324856.7:c.6619C>T	p.Gln2207Ter	p.Q2207*	ENST00000324856	NM_006015.4	2207	Cag/Tag																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856469	111856469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	210	373	1	ENST00000341259.2:c.520G>A	p.Ala174Thr	p.A174T	ENST00000341259	NM_005475.2	174	Gcc/Acc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41256885	41256885	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0011042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	476	469	1	ENST00000357654.3:c.301T>A	p.Tyr101Asn	p.Y101N	ENST00000357654	NM_007294.3	101	Tat/Aat																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56180504	56180505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	510	318	0	ENST00000399503.3:c.3836dup	p.Asn1279LysfsTer5	p.N1279Kfs*5	ENST00000399503	NM_005921.1	1278	aga/agAa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168691	56168692	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	547	423	0	ENST00000399503.3:c.1546dup	p.Arg516LysfsTer25	p.R516Kfs*25	ENST00000399503	NM_005921.1	515	-/A																																																																														
ESR1	0	MSKCC	GRCh37	6	152419920	152419921	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0011042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	224	434	0	ENST00000206249.3:c.1607_1608delinsAT	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTC/cAT																																																																														
VHL	0	MSKCC	GRCh37	3	10183733	10183733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	61	430	0	ENST00000256474.2:c.202T>C	p.Ser68Pro	p.S68P	ENST00000256474	NM_000551.3	68	Tcg/Ccg																																																																														
SETD2	0	MSKCC	GRCh37	3	47098526	47098526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	72	427	0	ENST00000409792.3:c.6748C>T	p.Gln2250Ter	p.Q2250*	ENST00000409792	NM_014159.6	2250	Caa/Taa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851815	134851815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	59	462	0	ENST00000398015.3:c.1221G>T	p.Gln407His	p.Q407H	ENST00000398015	NM_004441.4	407	caG/caT																																																																														
TET2	0	MSKCC	GRCh37	4	106197287	106197287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	50	286	0	ENST00000380013.4:c.5620G>A	p.Glu1874Lys	p.E1874K	ENST00000380013	NM_001127208.2	1874	Gag/Aag																																																																														
AKT1	0	MSKCC	GRCh37	14	105239423	105239423	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	55	329	0	ENST00000349310.3:c.964G>C	p.Glu322Gln	p.E322Q	ENST00000349310	NM_001014432.1	322	Gag/Cag																																																																														
CD79B	0	MSKCC	GRCh37	17	62007532	62007532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	102	696	0	ENST00000392795.3:c.335G>A	p.Gly112Asp	p.G112D	ENST00000392795	NM_001039933.1	112	gGc/gAc																																																																														
CIC	0	MSKCC	GRCh37	19	42793046	42793046	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	58	409	0	ENST00000575354.2:c.938C>G	p.Ser313Cys	p.S313C	ENST00000575354	NM_015125.3	313	tCt/tGt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011096-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			514	614	621	4	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011096-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			122	610	655	3	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011096-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			917	231	521	0	ENST00000349496.5:c.97T>G	p.Ser33Ala	p.S33A	ENST00000349496	NM_001904.3	33	Tct/Gct																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830136	72830136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011096-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	351	868	2	ENST00000268489.5:c.6445C>T	p.Arg2149Cys	p.R2149C	ENST00000268489	NM_006885.3	2149	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0011110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	582	617	1	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
APC	0	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	44	195	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																																																														
KIT	0	MSKCC	GRCh37	4	55598037	55598037	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0011110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	154	411	0	ENST00000288135.5:c.2234G>T	p.Gly745Val	p.G745V	ENST00000288135	NM_000222.2	745	gGc/gTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	34	534	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602764	10602764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	60	366	1	ENST00000171111.5:c.814C>T	p.Arg272Cys	p.R272C	ENST00000171111	NM_203500.1	272	Cgc/Tgc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971048	21971053	+	inframe_deletion	In_Frame_Del	DEL	GCCGCG	GCCGCG	-			P-0011117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	26	209	0	ENST00000304494.5:c.305_310del	p.Ala102_Leu104delinsVal	p.A102_L104delinsV	ENST00000304494	NM_000077.4	102	gCGCGGCtg/gtg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971048	21971053	+	inframe_deletion	In_Frame_Del	DEL	GCCGCG	GCCGCG	-			P-0011117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	26	209	0	ENST00000304494.5:c.305_310del	p.Ala102_Leu104delinsVal	p.A102_L104delinsV	ENST00000304494	NM_000077.4	102	gCGCGGCtg/gtg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971048	21971053	+	inframe_deletion	In_Frame_Del	DEL	GCCGCG	GCCGCG	-			P-0011117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	26	209	0	ENST00000304494.5:c.305_310del	p.Ala102_Leu104delinsVal	p.A102_L104delinsV	ENST00000304494	NM_000077.4	102	gCGCGGCtg/gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	408	618	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	35	211	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	213403208	213403208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	212	557	2	ENST00000342788.4:c.47C>T	p.Ala16Val	p.A16V	ENST00000342788	NM_005235.2	16	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	253	333	0	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																																																														
FLT4	0	MSKCC	GRCh37	5	180045887	180045887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	285	319	1	ENST00000261937.6:c.2884G>A	p.Ala962Thr	p.A962T	ENST00000261937	NM_182925.4	962	Gcc/Acc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827354	72827354	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	429	763	0	ENST00000268489.5:c.9227T>G	p.Met3076Arg	p.M3076R	ENST00000268489	NM_006885.3	3076	aTg/aGg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554551	63554551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	330	450	0	ENST00000307078.5:c.188G>A	p.Gly63Glu	p.G63E	ENST00000307078	NM_004655.3	63	gGg/gAg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123310859	123310859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	179	636	1	ENST00000358487.5:c.569G>A	p.Arg190Gln	p.R190Q	ENST00000358487	NM_000141.4	190	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	77	250	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0011176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	93	233	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55																																																																															
CDH1	0	MSKCC	GRCh37	16	68857523	68857534	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGCTAAGTAAG	TTGCTAAGTAAG	CACTTG			P-0011176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	68	253	0	ENST00000261769.5:c.2158_2164+4delTTGCTAAGTAAinsCACTT		p.X720_splice	ENST00000261769	NM_004360.3	720																																																																															
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	251	390	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	135	553	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	99	325	0	ENST00000327367.4:c.1265C>A	p.Ser422Tyr	p.S422Y	ENST00000327367	NM_005902.3	422	tCc/tAc																																																																														
CASP8	0	MSKCC	GRCh37	2	202139650	202139650	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1271	124	509	0	ENST00000358485.4:c.811C>G	p.Pro271Ala	p.P271A	ENST00000358485	NM_001080125.1	271	Cca/Gca																																																																														
SETD2	0	MSKCC	GRCh37	3	47142970	47142970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	124	480	0	ENST00000409792.3:c.4993G>T	p.Asp1665Tyr	p.D1665Y	ENST00000409792	NM_014159.6	1665	Gac/Tac																																																																														
KDR	0	MSKCC	GRCh37	4	55946283	55946283	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	83	337	0	ENST00000263923.4:c.3896C>G	p.Ser1299Ter	p.S1299*	ENST00000263923	NM_002253.2	1299	tCa/tGa																																																																														
PLK2	0	MSKCC	GRCh37	5	57751125	57751125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	38	263	0	ENST00000274289.3:c.1742A>G	p.Glu581Gly	p.E581G	ENST00000274289	NM_006622.3	581	gAg/gGg																																																																														
RAC1	0	MSKCC	GRCh37	7	6439802	6439802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	83	360	0	ENST00000356142.4:c.328G>C	p.Glu110Gln	p.E110Q	ENST00000356142	NM_018890.3	110	Gaa/Caa																																																																														
MLL3	0	MSKCC	GRCh37	7	151848645	151848645	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	44	291	0	ENST00000262189.6:c.12548C>G	p.Ser4183Cys	p.S4183C	ENST00000262189	NM_170606.2	4183	tCt/tGt																																																																														
FGF19	0	MSKCC	GRCh37	11	69518590	69518590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	51	189	0	ENST00000294312.3:c.55G>A	p.Ala19Thr	p.A19T	ENST00000294312	NM_005117.2	19	Gcc/Acc																																																																														
ATM	0	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	70	382	0	ENST00000278616.4:c.9023G>T	p.Arg3008Leu	p.R3008L	ENST00000278616	NM_000051.3	3008	cGt/cTt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18641497	18641497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	79	355	0	ENST00000266497.5:c.2496G>C	p.Gln832His	p.Q832H	ENST00000266497		832	caG/caC																																																																														
AR	0	MSKCC	GRCh37	X	66765877	66765877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1087	95	546	0	ENST00000374690.3:c.889G>A	p.Asp297Asn	p.D297N	ENST00000374690	NM_000044.3	297	Gac/Aac																																																																														
EP300	0	MSKCC	GRCh37	22	41545867	41545867	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1429	157	779	0	ENST00000263253.7:c.2482del	p.His828IlefsTer22	p.H828Ifs*22	ENST00000263253	NM_001429.3	828	Cat/at																																																																														
ARID2	0	MSKCC	GRCh37	12	46205334	46205340	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAAAT	GGTAAAT	-			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	79	264	1	ENST00000334344.6:c.418_418+6del		p.X140_splice	ENST00000334344	NM_152641.2	140																																																																															
NSD1	0	MSKCC	GRCh37	5	176639160	176639161	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0011183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	41	150	0	ENST00000439151.2:c.3760_3761delinsTT	p.Pro1254Phe	p.P1254F	ENST00000439151	NM_022455.4	1254	CCc/TTc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	311	580	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																														
TERT	0	MSKCC	GRCh37	5	1260644	1260644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	56	577	5	ENST00000310581.5:c.2915G>A	p.Arg972His	p.R972H	ENST00000310581	NM_198253.2	972	cGc/cAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8106066	8106066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	38	300	0	ENST00000346208.3:c.886C>A	p.Gln296Lys	p.Q296K	ENST00000346208		296	Cag/Aag																																																																														
TSHR	0	MSKCC	GRCh37	14	81610522	81610522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	58	610	1	ENST00000298171.2:c.2120G>A	p.Arg707Gln	p.R707Q	ENST00000298171	NM_000369.2	707	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7576891	7576891	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	563	384	1	ENST00000269305.4:c.955A>T	p.Lys319Ter	p.K319*	ENST00000269305	NM_001126112.2	319	Aag/Tag																																																																														
MLL3	0	MSKCC	GRCh37	7	151874958	151874958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	47	358	0	ENST00000262189.6:c.7580A>G	p.Asn2527Ser	p.N2527S	ENST00000262189	NM_170606.2	2527	aAt/aGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32900635	32900635	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0011201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	447	366	0	ENST00000380152.3:c.517-1G>T		p.X173_splice	ENST00000380152		173																																																																															
NCOR1	0	MSKCC	GRCh37	17	15974779	15974779	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	215	486	0	ENST00000268712.3:c.4096A>T	p.Lys1366Ter	p.K1366*	ENST00000268712	NM_006311.3	1366	Aaa/Taa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11136183	11136183	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0011201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	599	427	0	ENST00000344626.4:c.3167A>T	p.Glu1056Val	p.E1056V	ENST00000344626	NM_003072.3	1056	gAg/gTg																																																																														
EP300	0	MSKCC	GRCh37	22	41574192	41574222	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGATGAGCCCCCAGGCTCAGCAGATGAAC	AGGGATGAGCCCCCAGGCTCAGCAGATGAAC	-			P-0011201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	89	527	0	ENST00000263253.7:c.6478_6508del	p.Gly2160Ter	p.G2160*	ENST00000263253	NM_001429.3	2159	ggAGGGATGAGCCCCCAGGCTCAGCAGATGAAC/gg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0011221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	242	389	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165785	118165785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	155	236	0	ENST00000369448.3:c.295C>T	p.Leu99Phe	p.L99F	ENST00000369448	NM_017709.3	99	Ctt/Ttt																																																																														
MAX	0	MSKCC	GRCh37	14	65544630	65544630	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0011221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	238	361	0	ENST00000358664.4:c.295+1G>C		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																															
MAP2K4	0	MSKCC	GRCh37	17	12028689	12028689	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0011221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	252	391	0	ENST00000353533.5:c.891+1G>A		p.X297_splice	ENST00000353533	NM_003010.3	297																																																																															
SETD2	0	MSKCC	GRCh37	3	47098636	47098643	+	frameshift_variant	Frame_Shift_Del	DEL	GAATGTCC	GAATGTCC	-			P-0011221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	279	462	0	ENST00000409792.3:c.6631_6638del	p.Gly2211TyrfsTer32	p.G2211Yfs*32	ENST00000409792	NM_014159.6	2211	GGACATTCt/t																																																																														
PTEN	0	MSKCC	GRCh37	10	89624296	89624298	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0011225-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			371	25	281	0	ENST00000371953.3:c.70_72del	p.Asp24del	p.D24del	ENST00000371953	NM_000314.4	24	GAC/-																																																																														
MLL3	0	MSKCC	GRCh37	7	152027816	152027817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011225-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			256	18	362	0	ENST00000262189.6:c.258dup	p.Glu87ArgfsTer9	p.E87Rfs*9	ENST00000262189	NM_170606.2	86	-/A																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664760	138664760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	27	137	0	ENST00000330315.3:c.805G>T	p.Gly269Cys	p.G269C	ENST00000330315	NM_023067.3	269	Ggc/Tgc																																																																														
ATR	0	MSKCC	GRCh37	3	142177921	142177921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	70	348	0	ENST00000350721.4:c.7382C>T	p.Thr2461Ile	p.T2461I	ENST00000350721	NM_001184.3	2461	aCt/aTt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021244	31021244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	51	353	0	ENST00000375687.4:c.1243G>A	p.Asp415Asn	p.D415N	ENST00000375687	NM_015338.5	415	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	200	402	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
E2F3	0	MSKCC	GRCh37	6	20402595	20402595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	106	312	0	ENST00000346618.3:c.132C>G	p.Phe44Leu	p.F44L	ENST00000346618	NM_001949.4	44	ttC/ttG																																																																														
INHBA	0	MSKCC	GRCh37	7	41729942	41729942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	379	887	0	ENST00000242208.4:c.587G>T	p.Gly196Val	p.G196V	ENST00000242208	NM_002192.2	196	gGc/gTc																																																																														
MLL2	0	MSKCC	GRCh37	12	49431228	49431228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	199	503	0	ENST00000301067.7:c.9911C>T	p.Pro3304Leu	p.P3304L	ENST00000301067	NM_003482.3	3304	cCc/cTc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112026	115112026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	164	374	0	ENST00000257566.3:c.1714G>T	p.Gly572Trp	p.G572W	ENST00000257566	NM_016569.3	572	Ggg/Tgg																																																																														
NF1	0	MSKCC	GRCh37	17	29679408	29679408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	149	488	0	ENST00000358273.4:c.7591C>T	p.Gln2531Ter	p.Q2531*	ENST00000358273	NM_001042492.2	2531	Cag/Tag																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31394081	31394081	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	224	426	0	ENST00000328111.2:c.2368C>G	p.Pro790Ala	p.P790A	ENST00000328111	NM_006892.3	790	Cct/Gct																																																																														
NF1	0	MSKCC	GRCh37	17	29663380	29663381	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	163	392	0	ENST00000358273.4:c.6037dup	p.Ser2013LysfsTer17	p.S2013Kfs*17	ENST00000358273	NM_001042492.2	2012	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	227	476	1	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
NF1	0	MSKCC	GRCh37	17	29553474	29553474	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	244	542	0	ENST00000358273.4:c.2023G>T	p.Gly675Ter	p.G675*	ENST00000358273	NM_001042492.2	675	Gga/Tga																																																																														
NF2	0	MSKCC	GRCh37	22	30069456	30069456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	132	298	0	ENST00000338641.4:c.1321G>T	p.Ala441Ser	p.A441S	ENST00000338641	NM_000268.3	441	Gct/Tct																																																																														
CSF3R	0	MSKCC	GRCh37	1	36935402	36935402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	141	745	0	ENST00000361632.4:c.1325C>T	p.Pro442Leu	p.P442L	ENST00000361632		442	cCt/cTt																																																																														
PARP1	0	MSKCC	GRCh37	1	226567289	226567289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	208	432	0	ENST00000366794.5:c.1597G>T	p.Val533Leu	p.V533L	ENST00000366794	NM_001618.3	533	Gtg/Ttg																																																																														
MDC1	0	MSKCC	GRCh37	6	30671735	30671735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	179	508	0	ENST00000376406.3:c.5225G>T	p.Cys1742Phe	p.C1742F	ENST00000376406	NM_014641.2	1742	tGc/tTc																																																																														
MLL2	0	MSKCC	GRCh37	12	49433887	49433887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	178	529	0	ENST00000301067.7:c.7666C>T	p.Leu2556Phe	p.L2556F	ENST00000301067	NM_003482.3	2556	Ctc/Ttc																																																																														
NF1	0	MSKCC	GRCh37	17	29560151	29560151	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	296	450	2	ENST00000358273.4:c.3628G>T	p.Glu1210Ter	p.E1210*	ENST00000358273	NM_001042492.2	1210	Gaa/Taa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306560	41306560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	299	513	2	ENST00000373198.4:c.1099G>A	p.Glu367Lys	p.E367K	ENST00000373198	NM_133170.3	367	Gag/Aag																																																																														
BCOR	0	MSKCC	GRCh37	X	39913220	39913220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1320	176	756	1	ENST00000378444.4:c.4895C>A	p.Ala1632Asp	p.A1632D	ENST00000378444	NM_001123385.1	1632	gCc/gAc																																																																														
AR	0	MSKCC	GRCh37	X	66765580	66765580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	138	553	0	ENST00000374690.3:c.592C>A	p.Gln198Lys	p.Q198K	ENST00000374690	NM_000044.3	198	Cag/Aag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52685769	52685769	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	514	631	0	ENST00000394830.3:c.703delC	p.Gln235ArgfsTer18	p.Q235Rfs*18	ENST00000394830	NM_018313.4	235	Cag/ag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	233	436	0	ENST00000342988.3:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000342988	NM_005359.5	363	tGt/tTt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986830	36986830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	23	20	0	ENST00000354822.5:c.859C>T	p.Arg287Cys	p.R287C	ENST00000354822	NM_001079668.2	287	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0011264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	215	393	1	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106670	27106670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	267	380	1	ENST00000324856.7:c.6281G>T	p.Cys2094Phe	p.C2094F	ENST00000324856	NM_006015.4	2094	tGc/tTc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812154	212812154	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0011264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	156	426	0	ENST00000342788.4:c.421+1G>A		p.X141_splice	ENST00000342788	NM_005235.2	141																																																																															
PTPRD	0	MSKCC	GRCh37	9	8341913	8341913	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	210	401	0	ENST00000356435.5:c.4727A>G	p.Glu1576Gly	p.E1576G	ENST00000356435		1576	gAa/gGa																																																																														
MGA	0	MSKCC	GRCh37	15	41988881	41988881	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	938	727	0	ENST00000219905.7:c.1673A>G	p.Asp558Gly	p.D558G	ENST00000219905	NM_001164273.1	558	gAc/gGc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81942028	81942028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	315	567	0	ENST00000359376.3:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000359376	NM_002661.3	522	cCc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7579588	7579589	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GA			P-0011264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	224	309	0	ENST00000269305.4:c.97_98dup	p.Leu35ProfsTer10	p.L35Pfs*10	ENST00000269305	NM_001126112.2	33	tcc/tcTCc																																																																														
RNF43	0	MSKCC	GRCh37	17	56440642	56440643	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0011264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	379	537	0	ENST00000407977.2:c.575dup	p.Ala193GlyfsTer6	p.A193Gfs*6	ENST00000407977		192	ccg/ccCg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0011280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	30	385	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
EP300	0	MSKCC	GRCh37	22	41537062	41537062	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	76	724	0	ENST00000263253.7:c.1889A>G	p.Tyr630Cys	p.Y630C	ENST00000263253	NM_001429.3	630	tAc/tGc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177371	56177397	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTAATGAATGTTTTTTTCTTTCAGG	TGGTAATGAATGTTTTTTTCTTTCAGG	CCTGA			P-0011280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	47	579	0	ENST00000399503.3:c.2370-26_2370delinsCCTGA		p.X790_splice	ENST00000399503	NM_005921.1	790																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	131	383	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	110	265	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	72	552	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	154	430	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	87	297	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32184989	32184989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	187	472	1	ENST00000375023.3:c.1679G>A	p.Cys560Tyr	p.C560Y	ENST00000375023	NM_004557.3	560	tGt/tAt																																																																														
MAPK1	0	MSKCC	GRCh37	22	22160237	22160237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	176	415	0	ENST00000215832.6:c.394C>G	p.Gln132Glu	p.Q132E	ENST00000215832	NM_002745.4	132	Cag/Gag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	280	928	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
AR	0	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	453	707	0	ENST00000374690.3:c.2226G>C	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgC																																																																														
SETD2	0	MSKCC	GRCh37	3	47058722	47058722	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	242	780	0	ENST00000409792.3:c.7556del	p.Lys2519ArgfsTer3	p.K2519Rfs*3	ENST00000409792	NM_014159.6	2519	aAg/ag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0011297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	52	381	1				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0011297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	356	551	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
CARD11	0	MSKCC	GRCh37	7	2951813	2951813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	113	629	0	ENST00000396946.4:c.3137C>T	p.Ala1046Val	p.A1046V	ENST00000396946	NM_032415.4	1046	gCc/gTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713479	40713479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	142	416	0	ENST00000373198.4:c.4036G>A	p.Asp1346Asn	p.D1346N	ENST00000373198	NM_133170.3	1346	Gat/Aat																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576114	88576115	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0011297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	167	613	0	ENST00000360948.2:c.1558_1559delinsAA	p.Gly520Lys	p.G520K	ENST00000360948	NM_001012338.2	520	GGa/AAa																																																																														
TP53	0	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	224	415	1	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584787	48584787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	365	643	2	ENST00000342988.3:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000342988	NM_005359.5	289	Cag/Tag																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807335	1807335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	257	498	0	ENST00000260795.2:c.1584G>A	p.Met528Ile	p.M528I	ENST00000260795		528	atG/atA																																																																														
MTOR	0	MSKCC	GRCh37	1	11317010	11317010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	121	379	1	ENST00000361445.4:c.484G>A	p.Glu162Lys	p.E162K	ENST00000361445	NM_004958.3	162	Gag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16202780	16202780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	293	563	0	ENST00000375759.3:c.488G>C	p.Arg163Thr	p.R163T	ENST00000375759	NM_015001.2	163	aGa/aCa																																																																														
SPEN	0	MSKCC	GRCh37	1	16259202	16259202	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs142682023		P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	113	294	0	ENST00000375759.3:c.6467C>G	p.Ser2156Cys	p.S2156C	ENST00000375759	NM_015001.2	2156	tCt/tGt																																																																														
PARP1	0	MSKCC	GRCh37	1	226578223	226578223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	246	426	0	ENST00000366794.5:c.505G>A	p.Glu169Lys	p.E169K	ENST00000366794	NM_001618.3	169	Gag/Aag																																																																														
INPP4A	0	MSKCC	GRCh37	2	99155394	99155394	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	224	433	0	ENST00000074304.5:c.620G>C	p.Gly207Ala	p.G207A	ENST00000074304	NM_001134224.1	207	gGa/gCa																																																																														
SETD2	0	MSKCC	GRCh37	3	47164456	47164456	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	236	506	0	ENST00000409792.3:c.1670C>G	p.Ser557Cys	p.S557C	ENST00000409792	NM_014159.6	557	tCt/tGt																																																																														
SETD2	0	MSKCC	GRCh37	3	47164984	47164984	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	153	265	0	ENST00000409792.3:c.1142C>G	p.Ser381Ter	p.S381*	ENST00000409792	NM_014159.6	381	tCa/tGa																																																																														
PRDM1	0	MSKCC	GRCh37	6	106536199	106536199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	261	478	1	ENST00000369096.4:c.166G>A	p.Glu56Lys	p.E56K	ENST00000369096	NM_001198.3	56	Gag/Aag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106513193	106513193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	53	288	0	ENST00000359195.3:c.2097G>C	p.Leu699Phe	p.L699F	ENST00000359195	NM_002649.2	699	ttG/ttC																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485263	8485263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	227	453	2	ENST00000356435.5:c.3117G>C	p.Glu1039Asp	p.E1039D	ENST00000356435		1039	gaG/gaC																																																																														
SUFU	0	MSKCC	GRCh37	10	104375128	104375128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	222	482	0	ENST00000369902.3:c.1126G>C	p.Glu376Gln	p.E376Q	ENST00000369902	NM_016169.3	376	Gag/Cag																																																																														
ATM	0	MSKCC	GRCh37	11	108170605	108170605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	124	289	0	ENST00000278616.4:c.5170G>A	p.Glu1724Lys	p.E1724K	ENST00000278616	NM_000051.3	1724	Gaa/Aaa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514032	103514032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	182	333	1	ENST00000355739.4:c.848C>T	p.Ser283Phe	p.S283F	ENST00000355739	NM_000123.3	283	tCt/tTt																																																																														
GREM1	0	MSKCC	GRCh37	15	33023397	33023397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1891	499	1094	0	ENST00000300177.4:c.506G>C	p.Arg169Thr	p.R169T	ENST00000300177	NM_001191322.1	169	aGa/aCa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346918	89346918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	56	409	0	ENST00000301030.4:c.6032C>T	p.Ser2011Leu	p.S2011L	ENST00000301030	NM_001256183.1	2011	tCg/tTg																																																																														
JAK3	0	MSKCC	GRCh37	19	17955076	17955076	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	248	430	0	ENST00000458235.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000458235	NM_000215.3	51	Gag/Tag																																																																														
MED12	0	MSKCC	GRCh37	X	70341246	70341246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1485	307	545	2	ENST00000374080.3:c.805G>A	p.Glu269Lys	p.E269K	ENST00000374080		269	Gag/Aag																																																																														
ARAF	0	MSKCC	GRCh37	X	47426801	47426806	+	inframe_deletion	In_Frame_Del	DEL	AGGCTT	AGGCTT	-			P-0011302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	472	405	0	ENST00000377045.4:c.1046_1051delAGGCTT	p.Gln349_Phe351delinsLeu	p.Q349_F351delinsL	ENST00000377045	NM_001654.4	349	cAGGCTTtc/ctc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	221	313	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46546335	46546335	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	253	514	0	ENST00000262741.5:c.194G>A	p.Trp65Ter	p.W65*	ENST00000262741	NM_003629.3	65	tGg/tAg																																																																														
MYC	0	MSKCC	GRCh37	8	128750595	128750595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	409	531	0	ENST00000377970.2:c.132G>T	p.Glu44Asp	p.E44D	ENST00000377970	NM_002467.4	44	gaG/gaT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8404650	8404650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	49	327	0	ENST00000356435.5:c.4097C>T	p.Pro1366Leu	p.P1366L	ENST00000356435		1366	cCt/cTt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18762502	18762502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	178	433	0	ENST00000266497.5:c.3998A>G	p.Gln1333Arg	p.Q1333R	ENST00000266497		1333	cAg/cGg																																																																														
MLL2	0	MSKCC	GRCh37	12	49445527	49445527	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200106242		P-0011328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	403	429	1	ENST00000301067.7:c.1939C>A	p.Pro647Thr	p.P647T	ENST00000301067	NM_003482.3	647	Cca/Aca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828390	72828390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	425	724	0	ENST00000268489.5:c.8191C>T	p.Arg2731Trp	p.R2731W	ENST00000268489	NM_006885.3	2731	Cgg/Tgg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117935	70117935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	185	231	0	ENST00000245479.2:c.403C>T	p.Leu135Phe	p.L135F	ENST00000245479	NM_000346.3	135	Ctc/Ttc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11105527	11105527	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	208	273	0	ENST00000344626.4:c.1443G>T	p.Gln481His	p.Q481H	ENST00000344626	NM_003072.3	481	caG/caT																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141559	11141559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	448	435	0	ENST00000344626.4:c.3536A>G	p.Asn1179Ser	p.N1179S	ENST00000344626	NM_003072.3	1179	aAt/aGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056343	27056344	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0011328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	76	175	0	ENST00000324856.7:c.1341_1342delTA	p.Gln449AlafsTer173	p.Q449Afs*173	ENST00000324856	NM_006015.4	447	TAt/t																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105593	27105594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTG			P-0011328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	155	515	0	ENST00000324856.7:c.5209_5212dup	p.Asp1738GlyfsTer2	p.D1738Gfs*2	ENST00000324856	NM_006015.4	1735	gag/gaGGTGg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53231130	53231130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	97	229	0	ENST00000375401.3:c.1772G>T	p.Gly591Val	p.G591V	ENST00000375401	NM_004187.3	591	gGa/gTa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52661289	52661289	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	111	534	0	ENST00000394830.3:c.1541G>T	p.Ser514Ile	p.S514I	ENST00000394830	NM_018313.4	514	aGt/aTt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67569782	67569782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	86	340	0	ENST00000274335.5:c.443C>T	p.Thr148Ile	p.T148I	ENST00000274335		148	aCt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	32	345	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	27	261	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	20	482	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	352	482	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	259	360	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177626	56177626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	310	453	0	ENST00000399503.3:c.2599G>A	p.Glu867Lys	p.E867K	ENST00000399503	NM_005921.1	867	Gaa/Aaa																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054983	176054983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	55	658	0	ENST00000367669.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000367669	NM_022457.5	357	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	317	535	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																														
TSC2	0	MSKCC	GRCh37	16	2133701	2133701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	273	513	0	ENST00000219476.3:c.3889G>A	p.Ala1297Thr	p.A1297T	ENST00000219476	NM_000548.3	1297	Gcc/Acc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	220	311	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
RBM10	8241	MSKCC	GRCh37	X	47039356	47039358	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	345	335	0	ENST00000329236.7:c.754_756del	p.Ser252del	p.S252del	ENST00000329236	NM_001204466.1	250	TCC/-																																																																														
ATRX	0	MSKCC	GRCh37	X	76874314	76874314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	410	402	3	ENST00000373344.5:c.5408G>A	p.Arg1803His	p.R1803H	ENST00000373344	NM_000489.3	1803	cGt/cAt																																																																														
MLL2	0	MSKCC	GRCh37	12	49426544	49426544	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	448	666	2	ENST00000301067.7:c.11944C>T	p.Arg3982Ter	p.R3982*	ENST00000301067	NM_003482.3	3982	Cga/Tga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	443	755	0	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																														
MLL	0	MSKCC	GRCh37	11	118352585	118352585	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	378	676	1	ENST00000534358.1:c.3790C>T	p.Arg1264Ter	p.R1264*	ENST00000534358	NM_005933.3	1264	Cga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187627774	187627774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	447	640	2	ENST00000441802.2:c.3208C>T	p.Arg1070Ter	p.R1070*	ENST00000441802	NM_005245.3	1070	Cga/Tga																																																																														
MED12	0	MSKCC	GRCh37	X	70351422	70351422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	455	365	1	ENST00000374080.3:c.4070G>A	p.Arg1357His	p.R1357H	ENST00000374080		1357	cGc/cAc																																																																														
MLL3	0	MSKCC	GRCh37	7	151917610	151917610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	152	287	0	ENST00000262189.6:c.3710G>A	p.Arg1237Gln	p.R1237Q	ENST00000262189	NM_170606.2	1237	cGa/cAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	110	430	1	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807902	3807902	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	346	488	1	ENST00000262367.5:c.3517C>T	p.Arg1173Ter	p.R1173*	ENST00000262367	NM_004380.2	1173	Cga/Tga																																																																														
FAT1	0	MSKCC	GRCh37	4	187518900	187518900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	376	565	1	ENST00000441802.2:c.12304G>A	p.Gly4102Arg	p.G4102R	ENST00000441802	NM_005245.3	4102	Gga/Aga																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643392	52643392	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200522912		P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	364	601	2	ENST00000394830.3:c.2504G>A	p.Arg835His	p.R835H	ENST00000394830	NM_018313.4	835	cGt/cAt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71247358	71247358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	229	365	0	ENST00000318789.4:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000318789	NM_032682.5	59	Caa/Taa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808396	1808396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	272	463	0	ENST00000260795.2:c.2154C>A	p.Asn718Lys	p.N718K	ENST00000260795		718	aaC/aaA																																																																														
KDR	0	MSKCC	GRCh37	4	55958788	55958788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	456	636	2	ENST00000263923.4:c.3065G>A	p.Arg1022Gln	p.R1022Q	ENST00000263923	NM_002253.2	1022	cGa/cAa																																																																														
RAD50	0	MSKCC	GRCh37	5	131915055	131915055	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	258	423	0	ENST00000265335.6:c.412C>T	p.Arg138Ter	p.R138*	ENST00000265335		138	Cga/Tga																																																																														
PNRC1	0	MSKCC	GRCh37	6	89790672	89790672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	405	629	0	ENST00000336032.3:c.59C>A	p.Pro20Gln	p.P20Q	ENST00000336032	NM_006813.2	20	cCg/cAg																																																																														
MLL3	0	MSKCC	GRCh37	7	151836816	151836816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	401	524	0	ENST00000262189.6:c.14404G>T	p.Gly4802Trp	p.G4802W	ENST00000262189	NM_170606.2	4802	Ggg/Tgg																																																																														
MLL3	0	MSKCC	GRCh37	7	151856070	151856070	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	379	692	2	ENST00000262189.6:c.11548C>T	p.Arg3850Ter	p.R3850*	ENST00000262189	NM_170606.2	3850	Cga/Tga																																																																														
MLL3	0	MSKCC	GRCh37	7	151874749	151874749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	253	424	0	ENST00000262189.6:c.7789C>G	p.Pro2597Ala	p.P2597A	ENST00000262189	NM_170606.2	2597	Cca/Gca																																																																														
FGFR1	0	MSKCC	GRCh37	8	38275753	38275753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	298	427	1	ENST00000425967.3:c.1516C>T	p.Arg506Trp	p.R506W	ENST00000425967	NM_001174067.1	506	Cgg/Tgg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738280	145738280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	246	383	1	ENST00000428558.2:c.2705G>A	p.Arg902Gln	p.R902Q	ENST00000428558	NM_004260.3	902	cGg/cAg																																																																														
GNAQ	0	MSKCC	GRCh37	9	80430659	80430659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	173	303	0	ENST00000286548.4:c.349G>T	p.Asp117Tyr	p.D117Y	ENST00000286548	NM_002072.3	117	Gat/Tat																																																																														
PTCH1	0	MSKCC	GRCh37	9	98221971	98221971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	90	415	0	ENST00000331920.6:c.2798C>T	p.Ala933Val	p.A933V	ENST00000331920	NM_000264.3	933	gCg/gTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139400282	139400282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	132	177	0	ENST00000277541.6:c.4066C>T	p.Arg1356Cys	p.R1356C	ENST00000277541	NM_017617.3	1356	Cgc/Tgc																																																																														
HRAS	0	MSKCC	GRCh37	11	534304	534304	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	178	334	0	ENST00000311189.7:c.19G>C	p.Val7Leu	p.V7L	ENST00000311189		7	Gtg/Ctg																																																																														
MEN1	0	MSKCC	GRCh37	11	64573828	64573828	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	40	340	0	ENST00000337652.1:c.940G>C	p.Ala314Pro	p.A314P	ENST00000337652	NM_130803.2	314	Gcc/Ccc																																																																														
FGF3	0	MSKCC	GRCh37	11	69625318	69625318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138021053		P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	399	567	0	ENST00000334134.2:c.475G>A	p.Gly159Ser	p.G159S	ENST00000334134	NM_005247.2	159	Ggc/Agc																																																																														
TIMM8B	0	MSKCC	GRCh37	11	111956053	111956053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	116	170	0	ENST00000541231.1:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000541231		88	cGg/cAg																																																																														
MLL	0	MSKCC	GRCh37	11	118374168	118374168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	50	524	0	ENST00000534358.1:c.7561C>T	p.Arg2521Cys	p.R2521C	ENST00000534358	NM_005933.3	2521	Cgc/Tgc																																																																														
ETV6	0	MSKCC	GRCh37	12	12022523	12022523	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201298740		P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	393	504	0	ENST00000396373.4:c.629G>A	p.Arg210His	p.R210H	ENST00000396373	NM_001987.4	210	cGc/cAc																																																																														
LATS2	0	MSKCC	GRCh37	13	21562286	21562286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	288	416	0	ENST00000382592.4:c.1633C>T	p.Arg545Cys	p.R545C	ENST00000382592	NM_014572.2	545	Cgt/Tgt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914518	32914518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	496	907	0	ENST00000380152.3:c.6026A>G	p.Gln2009Arg	p.Q2009R	ENST00000380152		2009	cAa/cGa																																																																														
IRS2	0	MSKCC	GRCh37	13	110435342	110435342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	122	149	0	ENST00000375856.3:c.3059G>A	p.Arg1020His	p.R1020H	ENST00000375856	NM_003749.2	1020	cGt/cAt																																																																														
IRS2	0	MSKCC	GRCh37	13	110436204	110436204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	229	362	0	ENST00000375856.3:c.2197G>A	p.Ala733Thr	p.A733T	ENST00000375856	NM_003749.2	733	Gcc/Acc																																																																														
MGA	0	MSKCC	GRCh37	15	42021441	42021441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	504	836	0	ENST00000219905.7:c.3737G>A	p.Arg1246Gln	p.R1246Q	ENST00000219905	NM_001164273.1	1246	cGa/cAa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88727501	88727501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147992979		P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	104	507	3	ENST00000360948.2:c.278C>T	p.Thr93Met	p.T93M	ENST00000360948	NM_001012338.2	93	aCg/aTg																																																																														
TSC2	0	MSKCC	GRCh37	16	2134359	2134359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	369	533	0	ENST00000219476.3:c.4136C>T	p.Ser1379Leu	p.S1379L	ENST00000219476	NM_000548.3	1379	tCg/tTg																																																																														
NF1	0	MSKCC	GRCh37	17	29588752	29588752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	334	565	1	ENST00000358273.4:c.4601G>A	p.Arg1534Gln	p.R1534Q	ENST00000358273	NM_001042492.2	1534	cGa/cAa																																																																														
BRIP1	0	MSKCC	GRCh37	17	59763274	59763274	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	392	569	0	ENST00000259008.2:c.2828T>A	p.Val943Asp	p.V943D	ENST00000259008	NM_032043.2	943	gTc/gAc																																																																														
TCF3	0	MSKCC	GRCh37	19	1619203	1619203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201830800		P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	48	560	1	ENST00000344749.5:c.1357G>A	p.Ala453Thr	p.A453T	ENST00000344749	NM_001136139.2	453	Gca/Aca																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141427	11141427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	328	468	0	ENST00000344626.4:c.3404G>A	p.Arg1135Gln	p.R1135Q	ENST00000344626	NM_003072.3	1135	cGg/cAg																																																																														
POLD1	0	MSKCC	GRCh37	19	50906411	50906411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	394	548	2	ENST00000440232.2:c.1072C>T	p.Arg358Trp	p.R358W	ENST00000440232	NM_002691.3	358	Cgg/Tgg																																																																														
POLD1	0	MSKCC	GRCh37	19	50910273	50910273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	452	738	1	ENST00000440232.2:c.1528G>A	p.Val510Met	p.V510M	ENST00000440232	NM_002691.3	510	Gtg/Atg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46252810	46252810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	488	679	0	ENST00000371998.3:c.239G>A	p.Arg80His	p.R80H	ENST00000371998		80	cGt/cAt																																																																														
EP300	0	MSKCC	GRCh37	22	41566556	41566556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	318	519	2	ENST00000263253.7:c.4433G>A	p.Arg1478His	p.R1478H	ENST00000263253	NM_001429.3	1478	cGt/cAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39933164	39933164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	383	363	1	ENST00000378444.4:c.1435G>A	p.Gly479Arg	p.G479R	ENST00000378444	NM_001123385.1	479	Gga/Aga																																																																														
AR	0	MSKCC	GRCh37	X	66943588	66943588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	461	332	0	ENST00000374690.3:c.2668G>A	p.Val890Met	p.V890M	ENST00000374690	NM_000044.3	890	Gtg/Atg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188297	32188297	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	369	617	1	ENST00000375023.3:c.1044del	p.Gly349AlafsTer49	p.G349Afs*49	ENST00000375023	NM_004557.3	348	ggC/gg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139418317	139418318	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	281	488	0	ENST00000277541.6:c.254_255del	p.Tyr85CysfsTer57	p.Y85Cfs*57	ENST00000277541	NM_017617.3	85	tAT/t																																																																														
CTCF	0	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	242	490	0	ENST00000264010.4:c.609_610dup	p.Thr204LysfsTer19	p.T204Kfs*19	ENST00000264010	NM_006565.3	201	-/AA																																																																														
MSH2	0	MSKCC	GRCh37	2	47630490	47630490	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	248	436	0	ENST00000233146.2:c.160del	p.Ala54ProfsTer10	p.A54Pfs*10	ENST00000233146	NM_000251.2	54	Gcc/cc																																																																														
NSD1	0	MSKCC	GRCh37	5	176721114	176721114	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	174	254	0	ENST00000439151.2:c.6748del	p.Met2250CysfsTer44	p.M2250Cfs*44	ENST00000439151	NM_022455.4	2249	Aaa/aa																																																																														
MYCN	0	MSKCC	GRCh37	2	16082313	16082314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	36	498	0	ENST00000281043.3:c.134dupC	p.Glu47GlyfsTer8	p.E47Gfs*8	ENST00000281043	NM_005378.4	43	acc/aCcc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16056694	16056696	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	311	524	1	ENST00000268712.3:c.746_748del	p.Glu249del	p.E249del	ENST00000268712	NM_006311.3	249	gAAGct/gct																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164515	36164517	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	180	290	0	ENST00000300305.3:c.1358_1360del	p.Val453del	p.V453del	ENST00000300305		453	gTGGag/gag																																																																														
MLL2	0	MSKCC	GRCh37	12	49424178	49424178	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	247	335	0	ENST00000301067.7:c.13884delC	p.Thr4629ProfsTer11	p.T4629Pfs*11	ENST00000301067	NM_003482.3	4628	ccC/cc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132635	11132635	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	118	427	0	ENST00000344626.4:c.2854delG	p.Glu952LysfsTer5	p.E952Kfs*5	ENST00000344626	NM_003072.3	951	Ggg/gg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713860	30713860	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	272	474	0	ENST00000359013.4:c.1260del	p.Cys421ValfsTer35	p.C421Vfs*35	ENST00000359013	NM_001024847.2	420	ctG/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	171	397	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	182	391	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0011361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	24	323	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																														
RB1	0	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	147	277	1	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	252	318	0	ENST00000374690.3:c.2226G>C	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgC																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519233	137519233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	435	445	0	ENST00000367739.4:c.1405G>A	p.Asp469Asn	p.D469N	ENST00000367739	NM_000416.2	469	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0011371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	63	373	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4117584	4117584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	36	360	0	ENST00000262948.5:c.136C>T	p.Leu46Phe	p.L46F	ENST00000262948	NM_030662.3	46	Ctt/Ttt																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0011381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	237	724	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0011381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	81	383	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
ROS1	0	MSKCC	GRCh37	6	117609809	117609809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	168	752	0	ENST00000368508.3:c.6890C>A	p.Ser2297Tyr	p.S2297Y	ENST00000368508	NM_002944.2	2297	tCt/tAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952030	178952030	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	469	696	0	ENST00000263967.3:c.3085G>C	p.Asp1029His	p.D1029H	ENST00000263967	NM_006218.2	1029	Gat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	56	551	1	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178951889	178951889	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	382	533	0	ENST00000263967.3:c.2944G>C	p.Glu982Gln	p.E982Q	ENST00000263967	NM_006218.2	982	Gag/Cag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952078	178952078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	471	644	0	ENST00000263967.3:c.3133G>A	p.Asp1045Asn	p.D1045N	ENST00000263967	NM_006218.2	1045	Gat/Aat																																																																														
TSC1	0	MSKCC	GRCh37	9	135797222	135797222	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	117	807	0	ENST00000298552.3:c.647T>C	p.Phe216Ser	p.F216S	ENST00000298552	NM_001162426.1	216	tTt/tCt																																																																														
ARID2	0	MSKCC	GRCh37	12	46244523	46244523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	76	712	0	ENST00000334344.6:c.2617G>T	p.Ala873Ser	p.A873S	ENST00000334344	NM_152641.2	873	Gct/Tct																																																																														
MLL2	0	MSKCC	GRCh37	12	49431121	49431121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	63	731	2	ENST00000301067.7:c.10018C>T	p.Gln3340Ter	p.Q3340*	ENST00000301067	NM_003482.3	3340	Cag/Tag																																																																														
ATRX	0	MSKCC	GRCh37	X	76952164	76952164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	83	1030	0	ENST00000373344.5:c.271G>A	p.Glu91Lys	p.E91K	ENST00000373344	NM_000489.3	91	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	465	559	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
RB1	0	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	374	406	0	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga																																																																														
MTOR	0	MSKCC	GRCh37	1	11175476	11175476	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1254	79	494	0	ENST00000361445.4:c.7066A>T	p.Ile2356Phe	p.I2356F	ENST00000361445	NM_004958.3	2356	Att/Ttt																																																																														
ESR1	0	MSKCC	GRCh37	6	152382151	152382151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	298	305	0	ENST00000206249.3:c.1261A>G	p.Met421Val	p.M421V	ENST00000206249	NM_000125.3	421	Atg/Gtg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8317879	8317879	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	352	449	0	ENST00000356435.5:c.5734A>G	p.Thr1912Ala	p.T1912A	ENST00000356435		1912	Acg/Gcg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0011426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	52	126	0	ENST00000324856.7:c.413C>G	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0011426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	317	406	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
SPOP	0	MSKCC	GRCh37	17	47699360	47699360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	767	554	0	ENST00000347630.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000347630	NM_001007230.1	50	Gaa/Aaa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087558	27087558	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0011426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	320	446	0	ENST00000324856.7:c.2132C>G	p.Ser711Ter	p.S711*	ENST00000324856	NM_006015.4	711	tCa/tGa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157256633	157256633	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	189	534	0	ENST00000346085.5:c.1960C>T	p.Gln654Ter	p.Q654*	ENST00000346085	NM_020732.3	654	Caa/Taa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52702630	52702630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	319	366	0	ENST00000394830.3:c.268C>T	p.Gln90Ter	p.Q90*	ENST00000394830	NM_018313.4	90	Cag/Tag																																																																														
RICTOR	0	MSKCC	GRCh37	5	38996928	38996928	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1501	86	380	0	ENST00000357387.3:c.449T>C	p.Val150Ala	p.V150A	ENST00000357387	NM_152756.3	150	gTc/gCc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168749	56168749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	282	393	0	ENST00000399503.3:c.1603C>T	p.Gln535Ter	p.Q535*	ENST00000399503	NM_005921.1	535	Caa/Taa																																																																														
TBX3	0	MSKCC	GRCh37	12	115120699	115120699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1374	219	651	1	ENST00000257566.3:c.307C>A	p.Pro103Thr	p.P103T	ENST00000257566	NM_016569.3	103	Ccc/Acc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81953234	81953234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	557	751	0	ENST00000359376.3:c.2200C>T	p.Pro734Ser	p.P734S	ENST00000359376	NM_002661.3	734	Ccc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	391	536	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187530425	187530425	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	140	411	0	ENST00000441802.2:c.10118C>G	p.Ser3373Ter	p.S3373*	ENST00000441802	NM_005245.3	3373	tCa/tGa																																																																														
MLL3	0	MSKCC	GRCh37	7	151846011	151846011	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183426496		P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	232	315	1	ENST00000262189.6:c.13001G>A	p.Arg4334Gln	p.R4334Q	ENST00000262189	NM_170606.2	4334	cGg/cAg																																																																														
ATM	0	MSKCC	GRCh37	11	108202650	108202650	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	208	284	1	ENST00000278616.4:c.7674T>A	p.Phe2558Leu	p.F2558L	ENST00000278616	NM_000051.3	2558	ttT/ttA																																																																														
PALB2	0	MSKCC	GRCh37	16	23634378	23634378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	203	498	0	ENST00000261584.4:c.2908C>T	p.Leu970Phe	p.L970F	ENST00000261584	NM_024675.3	970	Ctt/Ttt																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46509397	46509764	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGAGGGAGTCGTTGTGCTGAACCAAGGATGTCTGCTGGTAATGGAGCACTAGCTCCTTCAGAGAGCTGTACAGGTTGTAGGGCTCTGCAAAGCCATAGCCCCGAGCAGTGCTGTAGATCACACAGTGCTTCACTTCCCCATCGGCCCTGCAATGACAAACCACAGAAGAAATGTTAAGGTAGGTAACAATAGATAAAAGGACACTAAATGGCCAGAAGTCTGAGAGCAATTGTTATGCAAACAAGTGTTTTTTGTTAACCAGGCAAAGCTTGTGAAATTGCGTTCCCATTCCCTACAGACTTGGCCACAGATACGGGTGTTAAAACAACCACAAATGTAAGGGTTTATTTATTTCTTTTTTTTTTTT	TTGAGGGAGTCGTTGTGCTGAACCAAGGATGTCTGCTGGTAATGGAGCACTAGCTCCTTCAGAGAGCTGTACAGGTTGTAGGGCTCTGCAAAGCCATAGCCCCGAGCAGTGCTGTAGATCACACAGTGCTTCACTTCCCCATCGGCCCTGCAATGACAAACCACAGAAGAAATGTTAAGGTAGGTAACAATAGATAAAAGGACACTAAATGGCCAGAAGTCTGAGAGCAATTGTTATGCAAACAAGTGTTTTTTGTTAACCAGGCAAAGCTTGTGAAATTGCGTTCCCATTCCCTACAGACTTGGCCACAGATACGGGTGTTAAAACAACCACAAATGTAAGGGTTTATTTATTTCTTTTTTTTTTTT	-			P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	70	427	0	ENST00000262741.5:c.1188-221_1334del		p.X396_splice	ENST00000262741	NM_003629.3	396																																																																															
PTEN	0	MSKCC	GRCh37	10	89720869	89720870	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0011449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	182	201	0	ENST00000371953.3:c.1022_1023del	p.Phe341Ter	p.F341*	ENST00000371953	NM_000314.4	340	aaTTtt/aatt																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	39	364	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
ALK	0	MSKCC	GRCh37	2	29449796	29449796	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	56	362	0	ENST00000389048.3:c.3059C>G	p.Ser1020Cys	p.S1020C	ENST00000389048	NM_004304.4	1020	tCc/tGc																																																																														
GATA3	0	MSKCC	GRCh37	10	8100429	8100429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	59	606	0	ENST00000346208.3:c.403C>A	p.Pro135Thr	p.P135T	ENST00000346208		135	Ccg/Acg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18715770	18715770	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	49	322	0	ENST00000266497.5:c.3601A>C	p.Thr1201Pro	p.T1201P	ENST00000266497		1201	Aca/Cca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486104	8486104	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	58	483	0	ENST00000356435.5:c.2713del	p.Glu905ArgfsTer4	p.E905Rfs*4	ENST00000356435		905	Gag/ag																																																																														
AKT1	0	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	314	579	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																														
CBFB	0	MSKCC	GRCh37	16	67063321	67063321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	126	252	0	ENST00000412916.2:c.11T>G	p.Val4Gly	p.V4G	ENST00000412916		4	gTc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	90	291	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	120	307	2	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48586235	48586235	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	89	240	0	ENST00000342988.3:c.905-1G>A		p.X302_splice	ENST00000342988	NM_005359.5	302																																																																															
INPP4B	0	MSKCC	GRCh37	4	143129616	143129616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	184	279	0	ENST00000262992.4:c.1034A>G	p.His345Arg	p.H345R	ENST00000262992	NM_001101669.1	345	cAt/cGt																																																																														
DAXX	0	MSKCC	GRCh37	6	33286530	33286530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	126	148	0	ENST00000374542.5:c.2213A>T	p.Asp738Val	p.D738V	ENST00000374542	NM_001141970.1	738	gAc/gTc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0011500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	349	343	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PMS2	0	MSKCC	GRCh37	7	6043647	6043647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	133	375	0	ENST00000265849.7:c.206C>T	p.Ser69Leu	p.S69L	ENST00000265849	NM_000535.5	69	tCa/tTa																																																																														
RBM10	0	MSKCC	GRCh37	X	47038846	47038846	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			18	239	121	0	ENST00000329236.7:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000329236	NM_001204466.1	208	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	47	885	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0011513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	38	802	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593477	48593477	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	74	893	3	ENST00000342988.3:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000342988	NM_005359.5	410	Cag/Tag																																																																														
MDM2	0	MSKCC	GRCh37	12	69222657	69222657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	65	1074	0	ENST00000462284.1:c.630G>T	p.Glu210Asp	p.E210D	ENST00000462284	NM_002392.5	210	gaG/gaT																																																																														
MLL2	0	MSKCC	GRCh37	12	49433650	49433650	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	323	556	1	ENST00000301067.7:c.7903C>T	p.Arg2635Ter	p.R2635*	ENST00000301067	NM_003482.3	2635	Cga/Tga																																																																														
IGF1	0	MSKCC	GRCh37	12	102813334	102813334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	32	493	1	ENST00000307046.8:c.355C>T	p.Arg119Cys	p.R119C	ENST00000307046	NM_001111285.1	119	Cgc/Tgc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271892	15271892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	208	225	0	ENST00000263388.2:c.6547C>T	p.Pro2183Ser	p.P2183S	ENST00000263388	NM_000435.2	2183	Ccc/Tcc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969322	44969322	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0011523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	375	486	0	ENST00000377967.4:c.4006-2A>T		p.X1336_splice	ENST00000377967	NM_021140.2	1336																																																																															
EP300	0	MSKCC	GRCh37	22	41543793	41543928	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAATTTCACAAAGGCATTCAGATCTAACATTTTGCTCATATTCACAGGTTTGAATCAATTTGGCCAGATGAGCATGGCCCAGCCCCCTATTGTACCCCGGCAAACCCCTCCTCTTCAGCACCATGGACAGTTGGC	TCAATTTCACAAAGGCATTCAGATCTAACATTTTGCTCATATTCACAGGTTTGAATCAATTTGGCCAGATGAGCATGGCCCAGCCCCCTATTGTACCCCGGCAAACCCCTCCTCTTCAGCACCATGGACAGTTGGC	-			P-0011523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	163	257	0	ENST00000263253.7:c.2132-44_2223del		p.X711_splice	ENST00000263253	NM_001429.3	711																																																																															
ARID1A	0	MSKCC	GRCh37	1	27097776	27097788	+	frameshift_variant	Frame_Shift_Del	DEL	ATTCCAAGAAGTC	ATTCCAAGAAGTC	TT			P-0011523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	313	490	0	ENST00000324856.7:c.3365_3377delinsTT	p.Asp1122ValfsTer67	p.D1122Vfs*67	ENST00000324856	NM_006015.4	1122	gATTCCAAGAAGTCc/gTTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	210	437	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0011533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	28	203	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0011533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	129	327	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
NRAS	0	MSKCC	GRCh37	1	115256439	115256439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	144	527	0	ENST00000369535.4:c.272C>T	p.Ala91Val	p.A91V	ENST00000369535	NM_002524.4	91	gCg/gTg																																																																														
GATA1	0	MSKCC	GRCh37	X	48652206	48652206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1214	133	641	0	ENST00000376670.3:c.877C>T	p.Arg293Trp	p.R293W	ENST00000376670	NM_002049.3	293	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175249	112175274	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAGCGAAGTTCCAGCAGTGTCACA	GTGAGCGAAGTTCCAGCAGTGTCACA	-			P-0011533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	74	309	0	ENST00000257430.4:c.3959_3984del	p.Val1320AlafsTer3	p.V1320Afs*3	ENST00000257430	NM_000038.5	1320	GTGAGCGAAGTTCCAGCAGTGTCACAg/g																																																																														
CDK4	0	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	64	411	0	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249020	55249022	+	missense_variant	Missense_Mutation	ONP	ACG	ACG	TCA			P-0011543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	105	416	0	ENST00000275493.2:c.2318_2320delinsTCA	p.His773_Val774delinsLeuMet	p.H773_V774delinsLM	ENST00000275493	NM_005228.3	773	cACGtg/cTCAtg																																																																														
B2M	0	MSKCC	GRCh37	15	45007706	45007707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCATCCG			P-0011543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	29	339	0	ENST00000558401.1:c.154_160dup	p.Asp54AlafsTer5	p.D54Afs*5	ENST00000558401	NM_004048.2	51	-/CCATCCG																																																																														
KDM6A	0	MSKCC	GRCh37	X	44894189	44894189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	235	223	0	ENST00000377967.4:c.578C>T	p.Ala193Val	p.A193V	ENST00000377967	NM_021140.2	193	gCt/gTt																																																																														
KIT	0	MSKCC	GRCh37	4	55593578	55593598	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAGAAACCCATGTATGAAGT	ACAGAAACCCATGTATGAAGT	-			P-0012007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	170	316	0	ENST00000288135.5:c.1648_1668del		p.X550_splice	ENST00000288135	NM_000222.2	550																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	103	446	0	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	21	103	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	534	375	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
TP53	0	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	78	284	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																														
MTOR	0	MSKCC	GRCh37	1	11317165	11317165	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	108	509	0	ENST00000361445.4:c.329A>C	p.Tyr110Ser	p.Y110S	ENST00000361445	NM_004958.3	110	tAt/tCt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134968239	134968239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	110	421	1	ENST00000398015.3:c.2752G>A	p.Asp918Asn	p.D918N	ENST00000398015	NM_004441.4	918	Gac/Aac																																																																														
APC	0	MSKCC	GRCh37	5	112116536	112116536	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200740020		P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	54	277	0	ENST00000257430.4:c.581G>A	p.Arg194Lys	p.R194K	ENST00000257430	NM_000038.5	194	aGg/aAg																																																																														
MLL	0	MSKCC	GRCh37	11	118375865	118375865	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200739718		P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	82	322	0	ENST00000534358.1:c.9258G>T	p.Gln3086His	p.Q3086H	ENST00000534358	NM_005933.3	3086	caG/caT																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713130	30713131	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	AT			P-0012010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	31	130	0	ENST00000359013.4:c.534_535dup	p.Asn179IlefsTer10	p.N179Ifs*10	ENST00000359013	NM_001024847.2	177	gaa/gaATa																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273806	18273806	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	230	518	0	ENST00000222254.8:c.1139T>A	p.Val380Asp	p.V380D	ENST00000222254	NM_005027.3	380	gTc/gAc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061196	38061197	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTT			P-0012030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	151	212	0	ENST00000250448.2:c.790_792dupAAG	p.Lys264dup	p.K264dup	ENST00000250448	NM_004496.3	264	-/AAG																																																																														
CXCR4	0	MSKCC	GRCh37	2	136872900	136872900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1524	314	650	0	ENST00000241393.3:c.598C>G	p.Gln200Glu	p.Q200E	ENST00000241393	NM_003467.2	200	Cag/Gag																																																																														
BAP1	0	MSKCC	GRCh37	3	52437906	52437906	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	206	588	1	ENST00000460680.1:c.1255A>T	p.Lys419Ter	p.K419*	ENST00000460680	NM_004656.3	419	Aag/Tag																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137271	64137271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	134	329	0	ENST00000334205.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000334205	NM_003942.2	568	aCg/aTg																																																																														
VHL	0	MSKCC	GRCh37	3	10191510	10191510	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	95	265	0	ENST00000256474.2:c.503del	p.Ser168ThrfsTer2	p.S168Tfs*2	ENST00000256474	NM_000551.3	168	aGc/ac																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	115	511	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
RAF1	0	MSKCC	GRCh37	3	12645694	12645694	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs3730271		P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	91	410	0	ENST00000251849.4:c.775T>C	p.Ser259Pro	p.S259P	ENST00000251849	NM_002880.3	259	Tcc/Ccc																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073881	8073881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1348	87	830	1	ENST00000377482.5:c.778C>A	p.Pro260Thr	p.P260T	ENST00000377482	NM_018948.3	260	Cca/Aca																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259464	89259464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	89	604	0	ENST00000336596.2:c.608C>A	p.Pro203Gln	p.P203Q	ENST00000336596	NM_005233.5	203	cCa/cAa																																																																														
GSK3B	0	MSKCC	GRCh37	3	119642260	119642260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	127	462	0	ENST00000316626.5:c.437A>G	p.Tyr146Cys	p.Y146C	ENST00000316626		146	tAt/tGt																																																																														
EPHA7	0	MSKCC	GRCh37	6	93953207	93953207	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	113	665	1	ENST00000369303.4:c.2934G>T	p.Met978Ile	p.M978I	ENST00000369303	NM_004440.3	978	atG/atT																																																																														
INHBA	0	MSKCC	GRCh37	7	41729357	41729357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1371	74	783	0	ENST00000242208.4:c.1172G>T	p.Cys391Phe	p.C391F	ENST00000242208	NM_002192.2	391	tGt/tTt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8633395	8633395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	100	557	0	ENST00000356435.5:c.274G>A	p.Asp92Asn	p.D92N	ENST00000356435		92	Gat/Aat																																																																														
PGR	0	MSKCC	GRCh37	11	100999731	100999731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	73	694	1	ENST00000325455.5:c.71G>T	p.Gly24Val	p.G24V	ENST00000325455	NM_001202474.3	24	gGa/gTa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472489	88472489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144852342		P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	61	511	0	ENST00000360948.2:c.2066C>T	p.Ala689Val	p.A689V	ENST00000360948	NM_001012338.2	689	gCg/gTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991344	72991344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148024459		P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	70	647	0	ENST00000268489.5:c.2701G>A	p.Ala901Thr	p.A901T	ENST00000268489	NM_006885.3	901	Gcc/Acc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15284960	15284960	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	108	393	0	ENST00000263388.2:c.4655A>T	p.Gln1552Leu	p.Q1552L	ENST00000263388	NM_000435.2	1552	cAg/cTg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599938	10599939	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TT			P-0012063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	105	585	1	ENST00000171111.5:c.1637_1638delinsAA	p.Phe546Ter	p.F546*	ENST00000171111	NM_203500.1	546	tTC/tAA																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	53	287	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0012066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	54	461	2	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
FLCN	0	MSKCC	GRCh37	17	17127425	17127425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	40	369	0	ENST00000285071.4:c.429C>A	p.Phe143Leu	p.F143L	ENST00000285071	NM_144997.5	143	ttC/ttA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	163	466	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	120	724	0	ENST00000269305.4:c.643A>C	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	Agt/Cgt																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225685	26225685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	117	1243	2	ENST00000360408.1:c.303G>T	p.Leu101Phe	p.L101F	ENST00000360408	NM_003532.2	101	ttG/ttT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	49	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ROS1	0	MSKCC	GRCh37	6	117700232	117700232	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	61	540	0	ENST00000368508.3:c.2587C>G	p.Arg863Gly	p.R863G	ENST00000368508	NM_002944.2	863	Cgg/Ggg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	642	430	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	314	509	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59770854	59770854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	71	459	0	ENST00000259008.2:c.2512G>C	p.Asp838His	p.D838H	ENST00000259008	NM_032043.2	838	Gat/Cat																																																																														
DDR2	0	MSKCC	GRCh37	1	162724433	162724433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	110	418	1	ENST00000367921.3:c.205G>T	p.Asp69Tyr	p.D69Y	ENST00000367921	NM_006182.2	69	Gat/Tat																																																																														
NF1	0	MSKCC	GRCh37	17	29557285	29557285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	104	430	0	ENST00000358273.4:c.2998C>T	p.Arg1000Cys	p.R1000C	ENST00000358273	NM_001042492.2	1000	Cgt/Tgt																																																																														
MTOR	0	MSKCC	GRCh37	1	11190744	11190744	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148876562		P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	142	498	0	ENST00000361445.4:c.5455C>T	p.His1819Tyr	p.H1819Y	ENST00000361445	NM_004958.3	1819	Cat/Tat																																																																														
SPEN	0	MSKCC	GRCh37	1	16199310	16199310	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	81	423	3	ENST00000375759.3:c.84-1G>T		p.X28_splice	ENST00000375759	NM_015001.2	28																																																																															
RAD54L	0	MSKCC	GRCh37	1	46726606	46726606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	73	517	0	ENST00000371975.4:c.685G>A	p.Glu229Lys	p.E229K	ENST00000371975	NM_003579.3	229	Gag/Aag																																																																														
RAD54L	0	MSKCC	GRCh37	1	46726992	46726992	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	105	666	0	ENST00000371975.4:c.826G>C	p.Glu276Gln	p.E276Q	ENST00000371975	NM_003579.3	276	Gag/Cag																																																																														
ASXL2	0	MSKCC	GRCh37	2	25978890	25978890	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	46	361	0	ENST00000435504.4:c.1033G>T	p.Glu345Ter	p.E345*	ENST00000435504		345	Gaa/Taa																																																																														
SETD2	0	MSKCC	GRCh37	3	47163865	47163865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	119	566	0	ENST00000409792.3:c.2261C>T	p.Ser754Leu	p.S754L	ENST00000409792	NM_014159.6	754	tCa/tTa																																																																														
PLK2	0	MSKCC	GRCh37	5	57751508	57751508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	148	568	0	ENST00000274289.3:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000274289	NM_006622.3	495	Gag/Aag																																																																														
JAK2	0	MSKCC	GRCh37	9	5081742	5081742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	110	352	0	ENST00000381652.3:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000381652	NM_004972.3	818	Gaa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89717764	89717764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	41	228	0	ENST00000371953.3:c.789G>C	p.Lys263Asn	p.K263N	ENST00000371953	NM_000314.4	263	aaG/aaC																																																																														
KDM5A	0	MSKCC	GRCh37	12	432932	432932	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	141	400	0	ENST00000399788.2:c.1984G>C	p.Glu662Gln	p.E662Q	ENST00000399788	NM_001042603.1	662	Gaa/Caa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18552696	18552696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	56	611	0	ENST00000266497.5:c.2107G>A	p.Glu703Lys	p.E703K	ENST00000266497		703	Gaa/Aaa																																																																														
POLE	0	MSKCC	GRCh37	12	133235982	133235982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	160	591	0	ENST00000320574.5:c.3174G>C	p.Lys1058Asn	p.K1058N	ENST00000320574	NM_006231.2	1058	aaG/aaC																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910986	32910986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1169	234	855	0	ENST00000380152.3:c.2494G>C	p.Glu832Gln	p.E832Q	ENST00000380152		832	Gag/Cag																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66782089	66782089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	69	586	0	ENST00000307102.5:c.1056G>C	p.Leu352Phe	p.L352F	ENST00000307102	NM_002755.3	352	ttG/ttC																																																																														
BLM	0	MSKCC	GRCh37	15	91341542	91341542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	61	463	0	ENST00000355112.3:c.3333G>A	p.Met1111Ile	p.M1111I	ENST00000355112	NM_000057.2	1111	atG/atA																																																																														
RPTOR	0	MSKCC	GRCh37	17	78931424	78931424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	54	473	0	ENST00000306801.3:c.3371G>C	p.Gly1124Ala	p.G1124A	ENST00000306801	NM_020761.2	1124	gGa/gCa																																																																														
PAK7	0	MSKCC	GRCh37	20	9520208	9520208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	149	520	0	ENST00000353224.5:c.2061G>C	p.Gln687His	p.Q687H	ENST00000353224	NM_177990.2	687	caG/caC																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264401	46264401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1475	189	893	0	ENST00000371998.3:c.1448C>G	p.Ser483Cys	p.S483C	ENST00000371998		483	tCt/tGt																																																																														
RAB35	0	MSKCC	GRCh37	12	120536614	120536614	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0012144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	175	719	0	ENST00000229340.5:c.477+1G>T		p.X159_splice	ENST00000229340	NM_006861.6	159																																																																															
NF1	0	MSKCC	GRCh37	17	29554311	29554311	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0012144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	347	578	0	ENST00000358273.4:c.2325+2T>C		p.X775_splice	ENST00000358273	NM_001042492.2	775																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	196	523	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	147	510	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24175836	24175837	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	186	617	0	ENST00000263121.7:c.1066_1067del	p.Leu356AspfsTer4	p.L356Dfs*4	ENST00000263121	NM_003073.3	355	aCT/a																																																																														
CARD11	0	MSKCC	GRCh37	7	2978321	2978321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs138920531		P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	182	559	0	ENST00000396946.4:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000396946	NM_032415.4	337	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112128201	112128201	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	222	633	0	ENST00000257430.4:c.704T>A	p.Leu235Ter	p.L235*	ENST00000257430	NM_000038.5	235	tTa/tAa																																																																														
AMER1	0	MSKCC	GRCh37	X	63411540	63411540	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	569	902	1	ENST00000330258.3:c.1627G>T	p.Glu543Ter	p.E543*	ENST00000330258	NM_152424.3	543	Gag/Tag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178951993	178951995	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	189	550	0	ENST00000263967.3:c.3051_3053del	p.Asp1018del	p.D1018del	ENST00000263967	NM_006218.2	1016	ttTGAt/ttt																																																																														
SOX9	0	MSKCC	GRCh37	17	70120139	70120140	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0012147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	230	171	0	ENST00000245479.2:c.1143_1144dupGC	p.Leu382ArgfsTer2	p.L382Rfs*2	ENST00000245479	NM_000346.3	381	acg/aCGcg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	160	453	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	82	741	0	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA																																																																														
PTEN	0	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	56	395	0	ENST00000371953.3:c.380G>A	p.Gly127Glu	p.G127E	ENST00000371953	NM_000314.4	127	gGa/gAa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32171622	32171622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	150	961	0	ENST00000375023.3:c.3156C>A	p.Ser1052Arg	p.S1052R	ENST00000375023	NM_004557.3	1052	agC/agA																																																																														
ARID2	0	MSKCC	GRCh37	12	46231103	46231103	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	70	679	0	ENST00000334344.6:c.1024-1G>A		p.X342_splice	ENST00000334344	NM_152641.2	342																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	68	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0012187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	56	403	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0012187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	102	477	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473729	67473729	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	62	476	0	ENST00000327367.4:c.809G>T	p.Cys270Phe	p.C270F	ENST00000327367	NM_005902.3	270	tGc/tTc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604706	48604706	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	47	437	0	ENST00000342988.3:c.1528G>T	p.Gly510Ter	p.G510*	ENST00000342988	NM_005359.5	510	Gga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012198-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			274	78	351	1				ENST00000310581	NM_198253.2																																																																																
NTRK1	0	MSKCC	GRCh37	1	156845324	156845324	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012198-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			997	239	948	0	ENST00000524377.1:c.1367T>A	p.Leu456Gln	p.L456Q	ENST00000524377	NM_002529.3	456	cTg/cAg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115739	8115739	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012198-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			732	261	908	0	ENST00000346208.3:c.1085A>G	p.Gln362Arg	p.Q362R	ENST00000346208		362	cAg/cGg																																																																														
TSC2	0	MSKCC	GRCh37	16	2134476	2134476	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012198-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			369	218	755	0	ENST00000219476.3:c.4253C>G	p.Ser1418Ter	p.S1418*	ENST00000219476	NM_000548.3	1418	tCa/tGa																																																																														
STAT5A	0	MSKCC	GRCh37	17	40459465	40459465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012198-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			780	291	1007	1	ENST00000345506.4:c.1726G>A	p.Gly576Arg	p.G576R	ENST00000345506	NM_003152.3	576	Ggg/Agg																																																																														
AXIN1	0	MSKCC	GRCh37	16	347729	347731	+	frameshift_variant	Frame_Shift_Del	DEL	CGA	CGA	AG			P-0012198-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			274	154	499	0	ENST00000262320.3:c.1775_1777delinsCT	p.Leu592ProfsTer113	p.L592Pfs*113	ENST00000262320	NM_003502.3	592	cTCGcc/cCTcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	53	523	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
EED	0	MSKCC	GRCh37	11	85967502	85967502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	18	444	0	ENST00000263360.6:c.500G>T	p.Gly167Val	p.G167V	ENST00000263360	NM_003797.3	167	gGa/gTa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591881	48591882	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	72	709	0	ENST00000342988.3:c.1045dup	p.Thr349AsnfsTer3	p.T349Nfs*3	ENST00000342988	NM_005359.5	348	-/A																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0012228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	240	384	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
PLK2	0	MSKCC	GRCh37	5	57751145	57751145	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	57	370	0	ENST00000274289.3:c.1722C>A	p.Tyr574Ter	p.Y574*	ENST00000274289	NM_006622.3	574	taC/taA																																																																														
TSC1	0	MSKCC	GRCh37	9	135796796	135796797	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	454	518	0	ENST00000298552.3:c.690_691insA	p.Pro231ThrfsTer11	p.P231Tfs*11	ENST00000298552	NM_001162426.1	230	-/A																																																																														
KIT	0	MSKCC	GRCh37	4	55593587	55593604	+	inframe_deletion	In_Frame_Del	DEL	CATGTATGAAGTACAGTG	CATGTATGAAGTACAGTG	-			P-0012228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	394	491	0	ENST00000288135.5:c.1653_1670delCATGTATGAAGTACAGTG	p.Met552_Trp557del	p.M552_W557del	ENST00000288135	NM_000222.2	551	ccCATGTATGAAGTACAGTGg/ccg																																																																														
MLL3	0	MSKCC	GRCh37	7	151878006	151878007	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0012228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	355	341	0	ENST00000262189.6:c.6938_6939del	p.Phe2313TrpfsTer8	p.F2313Wfs*8	ENST00000262189	NM_170606.2	2313	tTT/t																																																																														
VHL	0	MSKCC	GRCh37	3	10183843	10183860	+	inframe_deletion	In_Frame_Del	DEL	CACGGGCCGCCGCATCCA	CACGGGCCGCCGCATCCA	-			P-0012231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	18	268	0	ENST00000256474.2:c.314_331del	p.Thr105_His110del	p.T105_H110del	ENST00000256474	NM_000551.3	104	ggCACGGGCCGCCGCATCCAc/ggc																																																																														
VHL	0	MSKCC	GRCh37	3	10188265	10188275	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGCCATCTC	TGTGCCATCTC	G			P-0012231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	122	722	0	ENST00000256474.2:c.408_418delinsG	p.Phe136LeufsTer20	p.F136Lfs*20	ENST00000256474	NM_000551.3	136	ttTGTGCCATCTCtc/ttGtc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	64	514	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
XPO1	0	MSKCC	GRCh37	2	61705993	61705993	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	64	596	0	ENST00000401558.2:c.3178T>G	p.Phe1060Val	p.F1060V	ENST00000401558	NM_003400.3	1060	Ttt/Gtt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729917	30729917	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	47	305	1	ENST00000359013.4:c.1513G>T	p.Glu505Ter	p.E505*	ENST00000359013	NM_001024847.2	505	Gag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1219389	1219389	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	77	544	0	ENST00000326873.7:c.443del	p.Phe148SerfsTer13	p.F148Sfs*13	ENST00000326873	NM_000455.4	147	cgT/cg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	99	417	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112174152	112174152	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	243	452	0	ENST00000257430.4:c.2861T>A	p.Leu954Ter	p.L954*	ENST00000257430	NM_000038.5	954	tTa/tAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1463	242	853	2	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	104	353	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
EP300	0	MSKCC	GRCh37	22	41545855	41545855	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	217	653	1	ENST00000263253.7:c.2470C>T	p.Gln824Ter	p.Q824*	ENST00000263253	NM_001429.3	824	Caa/Taa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38968087	38968087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	116	489	2	ENST00000357387.3:c.1018C>T	p.Pro340Ser	p.P340S	ENST00000357387	NM_152756.3	340	Cct/Tct																																																																														
PTEN	0	MSKCC	GRCh37	10	89624269	89624269	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	59	194	0	ENST00000371953.3:c.43A>G	p.Arg15Gly	p.R15G	ENST00000371953	NM_000314.4	15	Aga/Gga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862932	9862932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	110	362	0	ENST00000330684.3:c.2371C>A	p.Leu791Met	p.L791M	ENST00000330684	NM_001134407.1	791	Ctg/Atg																																																																														
APC	0	MSKCC	GRCh37	5	112175207	112175207	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0012268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	45	243	0	ENST00000257430.4:c.3916delinsAA	p.Glu1306LysfsTer9	p.E1306Kfs*9	ENST00000257430	NM_000038.5	1306	Gaa/AAaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	409	565	1	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																																																														
ATM	0	MSKCC	GRCh37	11	108196896	108196896	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56009889		P-0012281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	373	610	1	ENST00000278616.4:c.6919C>T	p.Leu2307Phe	p.L2307F	ENST00000278616	NM_000051.3	2307	Ctt/Ttt																																																																														
APC	0	MSKCC	GRCh37	5	112174229	112174229	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	503	819	0	ENST00000257430.4:c.2938A>T	p.Lys980Ter	p.K980*	ENST00000257430	NM_000038.5	980	Aaa/Taa																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	236	463	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	134	412	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	211	512	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112179344	112179344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	94	562	0	ENST00000257430.4:c.8053A>G	p.Ser2685Gly	p.S2685G	ENST00000257430	NM_000038.5	2685	Agt/Ggt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	207	555	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga																																																																														
KIT	0	MSKCC	GRCh37	4	55604673	55604673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	106	494	1	ENST00000288135.5:c.2881G>A	p.Gly961Ser	p.G961S	ENST00000288135	NM_000222.2	961	Ggc/Agc																																																																														
MTOR	0	MSKCC	GRCh37	1	11174885	11174885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	386	710	0	ENST00000361445.4:c.7149G>T	p.Leu2383Phe	p.L2383F	ENST00000361445	NM_004958.3	2383	ttG/ttT																																																																														
APC	0	MSKCC	GRCh37	5	112116517	112116517	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	42	360	0	ENST00000257430.4:c.562C>A	p.Gln188Lys	p.Q188K	ENST00000257430	NM_000038.5	188	Caa/Aaa																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158579	26158579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	58	266	0	ENST00000289316.2:c.182G>A	p.Gly61Glu	p.G61E	ENST00000289316	NM_138720.2	61	gGg/gAg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32172130	32172130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	161	682	0	ENST00000375023.3:c.2902G>C	p.Glu968Gln	p.E968Q	ENST00000375023	NM_004557.3	968	Gaa/Caa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32185867	32185867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	108	567	0	ENST00000375023.3:c.1529G>T	p.Cys510Phe	p.C510F	ENST00000375023	NM_004557.3	510	tGt/tTt																																																																														
INHBA	0	MSKCC	GRCh37	7	41730027	41730027	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	199	1391	0	ENST00000242208.4:c.502A>T	p.Arg168Trp	p.R168W	ENST00000242208	NM_002192.2	168	Agg/Tgg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8376657	8376657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	230	504	0	ENST00000356435.5:c.4456G>T	p.Asp1486Tyr	p.D1486Y	ENST00000356435		1486	Gat/Tat																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457388	67457388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	111	561	0	ENST00000327367.4:c.362G>C	p.Cys121Ser	p.C121S	ENST00000327367	NM_005902.3	121	tGc/tCc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16005044	16005044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	63	329	0	ENST00000268712.3:c.2210G>T	p.Ser737Ile	p.S737I	ENST00000268712	NM_006311.3	737	aGt/aTt																																																																														
MALT1	0	MSKCC	GRCh37	18	56414850	56414850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	231	1141	3	ENST00000348428.3:c.2251C>T	p.His751Tyr	p.H751Y	ENST00000348428	NM_006785.3	751	Cac/Tac																																																																														
PTPRT	0	MSKCC	GRCh37	20	40770555	40770555	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	160	453	0	ENST00000373198.4:c.2827T>A	p.Tyr943Asn	p.Y943N	ENST00000373198	NM_133170.3	943	Tac/Aac																																																																														
STK11	0	MSKCC	GRCh37	19	1220690	1220690	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	238	669	0	ENST00000326873.7:c.709del	p.Asp237ThrfsTer50	p.D237Tfs*50	ENST00000326873	NM_000455.4	236	gtG/gt																																																																														
RB1	0	MSKCC	GRCh37	13	48937093	48937093	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	55	232	0	ENST00000267163.4:c.861+1del		p.E287fs	ENST00000267163	NM_000321.2	287	gaG/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7578429	7578434	+	inframe_deletion	In_Frame_Del	DEL	CTGTGA	CTGTGA	-			P-0012309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	192	441	0	ENST00000269305.4:c.496_501del	p.Ser166_Gln167del	p.S166_Q167del	ENST00000269305	NM_001126112.2	166	TCACAG/-																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061208	38061208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	36	339	0	ENST00000250448.2:c.781C>G	p.Arg261Gly	p.R261G	ENST00000250448	NM_004496.3	261	Cgc/Ggc																																																																														
CARD11	0	MSKCC	GRCh37	7	2954957	2954957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	88	484	0	ENST00000396946.4:c.2753G>A	p.Arg918Gln	p.R918Q	ENST00000396946	NM_032415.4	918	cGg/cAg																																																																														
PGR	0	MSKCC	GRCh37	11	100962491	100962491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	213	533	0	ENST00000325455.5:c.1906G>T	p.Gly636Cys	p.G636C	ENST00000325455	NM_001202474.3	636	Ggt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108205768	108205768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	141	401	0	ENST00000278616.4:c.8083G>A	p.Gly2695Ser	p.G2695S	ENST00000278616	NM_000051.3	2695	Ggt/Agt																																																																														
PPP6C	0	MSKCC	GRCh37	9	127920632	127920647	+	frameshift_variant	Frame_Shift_Del	DEL	ACTATAGTAACCTCTG	ACTATAGTAACCTCTG	-			P-0012326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	77	724	0	ENST00000373547.4:c.252_267del	p.Arg85TrpfsTer10	p.R85Wfs*10	ENST00000373547	NM_002721.4	84	gaCAGAGGTTACTATAGT/ga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157150377	157150377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	88	579	0	ENST00000346085.5:c.1559C>T	p.Pro520Leu	p.P520L	ENST00000346085	NM_020732.3	520	cCa/cTa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72984598	72984598	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	237	944	1	ENST00000268489.5:c.2986A>T	p.Lys996Ter	p.K996*	ENST00000268489	NM_006885.3	996	Aag/Tag																																																																														
STAT5B	0	MSKCC	GRCh37	17	40369482	40369482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0012332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	117	928	0	ENST00000293328.3:c.1170T>G	p.Asn390Lys	p.N390K	ENST00000293328	NM_012448.3	390	aaT/aaG																																																																														
KDM6A	0	MSKCC	GRCh37	X	44936066	44936067	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	73	412	0	ENST00000377967.4:c.2830dup	p.Tyr944LeufsTer5	p.Y944Lfs*5	ENST00000377967	NM_021140.2	943	att/aTtt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0012339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	95	641	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CDH1	0	MSKCC	GRCh37	16	68862107	68862107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	86	595	0	ENST00000261769.5:c.2195G>A	p.Arg732Gln	p.R732Q	ENST00000261769	NM_004360.3	732	cGg/cAg																																																																														
CDH1	0	MSKCC	GRCh37	16	68847399	68847399	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0012339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	51	474	0	ENST00000261769.5:c.1320+1G>C		p.X440_splice	ENST00000261769	NM_004360.3	440																																																																															
RFWD2	0	MSKCC	GRCh37	1	176175904	176175904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	18	40	0	ENST00000367669.3:c.211G>A	p.Ala71Thr	p.A71T	ENST00000367669	NM_022457.5	71	Gcg/Acg																																																																														
NF1	0	MSKCC	GRCh37	17	29556879	29556880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	154	325	0	ENST00000358273.4:c.2880dup	p.Val961CysfsTer14	p.V961Cfs*14	ENST00000358273	NM_001042492.2	959	-/T																																																																														
BCOR	0	MSKCC	GRCh37	X	39911597	39911597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	168	704	1	ENST00000378444.4:c.5033G>A	p.Arg1678His	p.R1678H	ENST00000378444	NM_001123385.1	1678	cGc/cAc																																																																														
FLT1	0	MSKCC	GRCh37	13	28895658	28895658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	150	695	0	ENST00000282397.4:c.3116G>A	p.Cys1039Tyr	p.C1039Y	ENST00000282397	NM_002019.4	1039	tGt/tAt																																																																														
CDH1	0	MSKCC	GRCh37	16	68849641	68849642	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	ATA			P-0012362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	127	490	0	ENST00000261769.5:c.1546_1547insAAT	p.Thr515_Phe516insTer	p.T515_F516ins*	ENST00000261769	NM_004360.3	515	aca/acATAa																																																																														
TBX3	0	MSKCC	GRCh37	12	115117361	115117362	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0012362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	174	774	0	ENST00000257566.3:c.812dupA	p.Tyr271Ter	p.Y271*	ENST00000257566	NM_016569.3	271	tac/taAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	34	644	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	28	441	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0012372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	79	311	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527502	157527502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	195	603	0	ENST00000346085.5:c.5227G>A	p.Glu1743Lys	p.E1743K	ENST00000346085	NM_020732.3	1743	Gaa/Aaa																																																																														
PTEN	0	MSKCC	GRCh37	10	89711902	89711902	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	89	680	0	ENST00000371953.3:c.520T>G	p.Tyr174Asp	p.Y174D	ENST00000371953	NM_000314.4	174	Tat/Gat																																																																														
PTEN	0	MSKCC	GRCh37	10	89717723	89717724	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAC			P-0012372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	72	530	0	ENST00000371953.3:c.748_749insCCAC	p.Cys250SerfsTer4	p.C250Sfs*4	ENST00000371953	NM_000314.4	250	tgt/tCCACgt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061250	38061250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	312	718	0	ENST00000250448.2:c.739C>T	p.His247Tyr	p.H247Y	ENST00000250448	NM_004496.3	247	Cac/Tac																																																																														
ATM	0	MSKCC	GRCh37	11	108204661	108204661	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0012375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	268	497	0	ENST00000278616.4:c.7976T>G	p.Leu2659Ter	p.L2659*	ENST00000278616	NM_000051.3	2659	tTa/tGa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830688	72830688	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	294	1369	2	ENST00000268489.5:c.5893C>T	p.Gln1965Ter	p.Q1965*	ENST00000268489	NM_006885.3	1965	Cag/Tag																																																																														
TERT	0	MSKCC	GRCh37	5	1260624	1260624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	437	733	0	ENST00000310581.5:c.2935C>T	p.Arg979Trp	p.R979W	ENST00000310581	NM_198253.2	979	Cgg/Tgg																																																																														
MEN1	0	MSKCC	GRCh37	11	64575084	64575084	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	470	672	0	ENST00000337652.1:c.738T>G	p.Cys246Trp	p.C246W	ENST00000337652	NM_130803.2	246	tgT/tgG																																																																														
RB1	0	MSKCC	GRCh37	13	48939105	48939105	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0012382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	180	375	0	ENST00000267163.4:c.937G>T	p.Glu313Ter	p.E313*	ENST00000267163	NM_000321.2	313	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	37	565	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178919310	178919310	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0012395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	48	292	1	ENST00000263967.3:c.795T>G	p.Tyr265Ter	p.Y265*	ENST00000263967	NM_006218.2	265	taT/taG																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	253	616	1	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	107	401	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112170777	112170777	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	385	633	1	ENST00000257430.4:c.1873C>T	p.Gln625Ter	p.Q625*	ENST00000257430	NM_000038.5	625	Cag/Tag																																																																														
ACVR1	0	MSKCC	GRCh37	2	158622579	158622579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	597	827	0	ENST00000263640.3:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000263640	NM_001105.4	307	cGa/cAa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114711026	114711026	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	209	328	0	ENST00000543371.1:c.250G>T	p.Glu84Ter	p.E84*	ENST00000543371	NM_001198531.1	84	Gaa/Taa																																																																														
MLL	0	MSKCC	GRCh37	11	118363824	118363824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	222	545	1	ENST00000534358.1:c.5057G>A	p.Arg1686His	p.R1686H	ENST00000534358	NM_005933.3	1686	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578376	7578376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	262	343	0	ENST00000269305.4:c.554delG	p.Ser185ThrfsTer62	p.S185Tfs*62	ENST00000269305	NM_001126112.2	185	aGc/ac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089647	27089657	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGCCCTAAC	ATGGCCCTAAC	-			P-0012399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	182	575	1	ENST00000324856.7:c.2609_2619del	p.Pro870GlnfsTer62	p.P870Qfs*62	ENST00000324856	NM_006015.4	868	tATGGCCCTAAC/t																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	129	160	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	368	487	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	302	429	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160597	56160597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	125	399	0	ENST00000399503.3:c.871C>T	p.Pro291Ser	p.P291S	ENST00000399503	NM_005921.1	291	Cct/Tct																																																																														
BRD4	0	MSKCC	GRCh37	19	15354044	15354044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	105	143	0	ENST00000263377.2:c.2836C>T	p.Pro946Ser	p.P946S	ENST00000263377	NM_058243.2	946	Cct/Tct																																																																														
PTPRT	0	MSKCC	GRCh37	20	41076862	41076862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	399	441	1	ENST00000373198.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000373198	NM_133170.3	520	Gag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32187456	32187456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	346	520	1	ENST00000375023.3:c.1423G>A	p.Asp475Asn	p.D475N	ENST00000375023	NM_004557.3	475	Gat/Aat																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967209	93967209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	83	580	0	ENST00000369303.4:c.2143G>A	p.Glu715Lys	p.E715K	ENST00000369303	NM_004440.3	715	Gaa/Aaa																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8075655	8075655	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	453	649	0	ENST00000377482.5:c.25C>T	p.Gln9Ter	p.Q9*	ENST00000377482	NM_018948.3	9	Cag/Tag																																																																														
XPO1	0	MSKCC	GRCh37	2	61724021	61724021	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	147	416	0	ENST00000401558.2:c.881T>C	p.Leu294Pro	p.L294P	ENST00000401558	NM_003400.3	294	cTa/cCa																																																																														
TP63	0	MSKCC	GRCh37	3	189582030	189582030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	269	384	0	ENST00000264731.3:c.589G>A	p.Glu197Lys	p.E197K	ENST00000264731	NM_003722.4	197	Gaa/Aaa																																																																														
FAT1	0	MSKCC	GRCh37	4	187510099	187510099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	127	459	1	ENST00000441802.2:c.13414G>A	p.Gly4472Ser	p.G4472S	ENST00000441802	NM_005245.3	4472	Ggt/Agt																																																																														
IL7R	0	MSKCC	GRCh37	5	35876265	35876265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	268	461	1	ENST00000303115.3:c.1057G>A	p.Asp353Asn	p.D353N	ENST00000303115	NM_002185.3	353	Gat/Aat																																																																														
MLL3	0	MSKCC	GRCh37	7	151891316	151891316	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	158	402	0	ENST00000262189.6:c.4538C>T	p.Pro1513Leu	p.P1513L	ENST00000262189	NM_170606.2	1513	cCa/cTa																																																																														
CBL	0	MSKCC	GRCh37	11	119167720	119167720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	346	468	0	ENST00000264033.4:c.2129C>T	p.Pro710Leu	p.P710L	ENST00000264033	NM_005188.3	710	cCt/cTt																																																																														
MLL2	0	MSKCC	GRCh37	12	49425881	49425881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	111	484	0	ENST00000301067.7:c.12607G>A	p.Gly4203Arg	p.G4203R	ENST00000301067	NM_003482.3	4203	Gga/Aga																																																																														
ERBB2	0	MSKCC	GRCh37	17	37856518	37856518	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	218	328	0	ENST00000269571.5:c.27G>A	p.Trp9Ter	p.W9*	ENST00000269571		9	tgG/tgA																																																																														
PTPRS	0	MSKCC	GRCh37	19	5231606	5231606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	33	93	0	ENST00000357368.4:c.1870G>A	p.Asp624Asn	p.D624N	ENST00000357368	NM_002850.3	624	Gac/Aac																																																																														
PAK7	0	MSKCC	GRCh37	20	9546945	9546945	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	244	365	0	ENST00000353224.5:c.1077A>T	p.Gln359His	p.Q359H	ENST00000353224	NM_177990.2	359	caA/caT																																																																														
RUNX1	0	MSKCC	GRCh37	21	36206724	36206724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	160	307	0	ENST00000300305.3:c.788C>T	p.Pro263Leu	p.P263L	ENST00000300305		263	cCt/cTt																																																																														
AMER1	0	MSKCC	GRCh37	X	63410673	63410673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	150	843	0	ENST00000330258.3:c.2494G>A	p.Glu832Lys	p.E832K	ENST00000330258	NM_152424.3	832	Gaa/Aaa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332685	153332688	+	frameshift_variant	Frame_Shift_Del	DEL	AGTC	AGTC	-			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	568	600	0	ENST00000281708.4:c.268_271del	p.Asp90ProfsTer78	p.D90Pfs*78	ENST00000281708	NM_033632.3	90	GACTcc/cc																																																																														
MLL3	0	MSKCC	GRCh37	7	151945057	151945058	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	31	229	0	ENST00000262189.6:c.2461_2462delinsTT	p.Pro821Leu	p.P821L	ENST00000262189	NM_170606.2	821	CCa/TTa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5223018	5223019	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	203	277	0	ENST00000357368.4:c.2784_2785delinsTT	p.Arg929Cys	p.R929C	ENST00000357368	NM_002850.3	928	ccCCgt/ccTTgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	16	441	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0012413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	26	656	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	20	741	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
RB1	0	MSKCC	GRCh37	13	48878116	48878116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	11	171	1	ENST00000267163.4:c.68C>T	p.Pro23Leu	p.P23L	ENST00000267163	NM_000321.2	23	cCg/cTg																																																																														
SMO	0	MSKCC	GRCh37	7	128846377	128846377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	29	899	2	ENST00000249373.3:c.1213C>A	p.Leu405Met	p.L405M	ENST00000249373	NM_005631.4	405	Ctg/Atg																																																																														
MLL3	0	MSKCC	GRCh37	7	151874842	151874842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	23	636	0	ENST00000262189.6:c.7696C>T	p.Pro2566Ser	p.P2566S	ENST00000262189	NM_170606.2	2566	Cct/Tct																																																																														
ARAF	0	MSKCC	GRCh37	X	47430296	47430296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	37	676	0	ENST00000377045.4:c.1571G>T	p.Arg524Leu	p.R524L	ENST00000377045	NM_001654.4	524	cGt/cTt																																																																														
AR	0	MSKCC	GRCh37	X	66766194	66766213	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCGCAGTGCCGCTATG	GGCGGCGCAGTGCCGCTATG	-			P-0012427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	12	221	0	ENST00000374690.3:c.1208_1227del	p.Ala403GlyfsTer92	p.A403Gfs*92	ENST00000374690	NM_000044.3	402	gcGGCGGCGCAGTGCCGCTATGgg/gcgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	309	377	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	128	421	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974699	21974699	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	81	480	0	ENST00000304494.5:c.128del	p.Ser43IlefsTer10	p.S43Ifs*10	ENST00000304494	NM_000077.4	43	aGt/at																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974699	21974699	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	81	480	0	ENST00000304494.5:c.128del	p.Ser43IlefsTer10	p.S43Ifs*10	ENST00000304494	NM_000077.4	43	aGt/at																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092794	27092794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	35	503	0	ENST00000324856.7:c.2815G>T	p.Gly939Cys	p.G939C	ENST00000324856	NM_006015.4	939	Ggc/Tgc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212484000	212484000	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	32	359	0	ENST00000342788.4:c.2203G>T	p.Gly735Cys	p.G735C	ENST00000342788	NM_005235.2	735	Ggt/Tgt																																																																														
FAT1	0	MSKCC	GRCh37	4	187541438	187541438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	48	389	0	ENST00000441802.2:c.6302G>T	p.Arg2101Leu	p.R2101L	ENST00000441802	NM_005245.3	2101	cGc/cTc																																																																														
CARD11	0	MSKCC	GRCh37	7	2984081	2984081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	17	327	0	ENST00000396946.4:c.449G>A	p.Cys150Tyr	p.C150Y	ENST00000396946	NM_032415.4	150	tGc/tAc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78727885	78727885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	96	473	0	ENST00000306801.3:c.730G>T	p.Ala244Ser	p.A244S	ENST00000306801	NM_020761.2	244	Gca/Tca																																																																														
RPTOR	0	MSKCC	GRCh37	17	78727895	78727895	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	91	461	0	ENST00000306801.3:c.740A>T	p.Glu247Val	p.E247V	ENST00000306801	NM_020761.2	247	gAg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	197	586	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	71	280	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	71	280	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	71	280	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	161	680	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt																																																																														
HLA-A	0	MSKCC	GRCh37	6	29912306	29912306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	113	542	0	ENST00000376809.5:c.925G>A	p.Val309Met	p.V309M	ENST00000376809	NM_002116.7	309	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	252	405	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578401	7578402	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0012504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	96	342	0	ENST00000269305.4:c.526_528dupTGC	p.Cys176dup	p.C176dup	ENST00000269305	NM_001126112.2	176	-/TGC																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	170	467	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
CDK4	0	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	90	419	0	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt																																																																														
KIT	0	MSKCC	GRCh37	4	55561897	55561897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	87	417	0	ENST00000288135.5:c.287C>A	p.Thr96Lys	p.T96K	ENST00000288135	NM_000222.2	96	aCg/aAg																																																																														
CSF1R	0	MSKCC	GRCh37	5	149433967	149433967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	54	441	0	ENST00000286301.3:c.2681C>T	p.Ala894Val	p.A894V	ENST00000286301	NM_005211.3	894	gCc/gTc																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197301	26197301	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1609	125	925	0	ENST00000356476.2:c.178G>T	p.Glu60Ter	p.E60*	ENST00000356476		60	Gag/Tag																																																																														
MDC1	0	MSKCC	GRCh37	6	30672636	30672636	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	330	545	0	ENST00000376406.3:c.4324G>C	p.Val1442Leu	p.V1442L	ENST00000376406	NM_014641.2	1442	Gtg/Ctg																																																																														
CARD11	0	MSKCC	GRCh37	7	2963951	2963951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	132	575	0	ENST00000396946.4:c.1856C>A	p.Ser619Tyr	p.S619Y	ENST00000396946	NM_032415.4	619	tCc/tAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55268948	55268948	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	130	553	0	ENST00000275493.2:c.3014A>T	p.Glu1005Val	p.E1005V	ENST00000275493	NM_005228.3	1005	gAa/gTa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8633397	8633397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	52	524	0	ENST00000356435.5:c.272G>A	p.Arg91Lys	p.R91K	ENST00000356435		91	aGg/aAg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983292	15983292	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	105	432	0	ENST00000268712.3:c.3487G>T	p.Gly1163Cys	p.G1163C	ENST00000268712	NM_006311.3	1163	Ggc/Tgc																																																																														
NF1	0	MSKCC	GRCh37	17	29576015	29576015	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	167	393	2	ENST00000358273.4:c.3988G>T	p.Glu1330Ter	p.E1330*	ENST00000358273	NM_001042492.2	1330	Gag/Tag																																																																														
AR	0	MSKCC	GRCh37	X	66942737	66942737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1372	108	876	1	ENST00000374690.3:c.2518G>T	p.Asp840Tyr	p.D840Y	ENST00000374690	NM_000044.3	840	Gat/Tat																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0012537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	26	551	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
MED12	0	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1323	41	629	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	286	432	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	199	360	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KIT	0	MSKCC	GRCh37	4	55593431	55593431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs72550822		P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	128	678	1	ENST00000288135.5:c.1588G>A	p.Val530Ile	p.V530I	ENST00000288135	NM_000222.2	530	Gta/Ata																																																																														
FLT4	0	MSKCC	GRCh37	5	180038369	180038369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	245	589	2	ENST00000261937.6:c.3648C>A	p.Asp1216Glu	p.D1216E	ENST00000261937	NM_182925.4	1216	gaC/gaA																																																																														
FLT4	0	MSKCC	GRCh37	5	180053021	180053021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	87	516	0	ENST00000261937.6:c.1269G>T	p.Gln423His	p.Q423H	ENST00000261937	NM_182925.4	423	caG/caT																																																																														
SOX17	0	MSKCC	GRCh37	8	55372232	55372232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	172	357	0	ENST00000297316.4:c.922G>A	p.Gly308Arg	p.G308R	ENST00000297316	NM_022454.3	308	Ggg/Agg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87285788	87285788	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76060730		P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	80	651	0	ENST00000277120.3:c.125G>A	p.Arg42Gln	p.R42Q	ENST00000277120		42	cGg/cAg																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66522048	66522048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	75	229	0	ENST00000358598.2:c.703C>T	p.Leu235Phe	p.L235F	ENST00000358598	NM_212471.2	235	Ctc/Ttc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604786	48604791	+	inframe_deletion	In_Frame_Del	DEL	AGACGA	AGACGA	-			P-0012554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	139	502	0	ENST00000342988.3:c.1610_1615del	p.Asp537_Glu538del	p.D537_E538del	ENST00000342988	NM_005359.5	536	ctAGACGAa/cta																																																																														
TET2	0	MSKCC	GRCh37	4	106156187	106156187	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17253672		P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	52	203	0	ENST00000380013.4:c.1088C>T	p.Pro363Leu	p.P363L	ENST00000380013	NM_001127208.2	363	cCt/cTt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	76	258	1	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
MSH2	0	MSKCC	GRCh37	2	47705464	47705464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	22	246	0	ENST00000233146.2:c.2264C>T	p.Ser755Phe	p.S755F	ENST00000233146	NM_000251.2	755	tCt/tTt																																																																														
MLL3	0	MSKCC	GRCh37	7	151856061	151856061	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	105	356	0	ENST00000262189.6:c.11557C>G	p.Arg3853Gly	p.R3853G	ENST00000262189	NM_170606.2	3853	Cgg/Ggg																																																																														
MLL3	0	MSKCC	GRCh37	7	151873779	151873779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	19	173	0	ENST00000262189.6:c.8759G>A	p.Ser2920Asn	p.S2920N	ENST00000262189	NM_170606.2	2920	aGt/aAt																																																																														
MYC	0	MSKCC	GRCh37	8	128752872	128752872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	29	184	0	ENST00000377970.2:c.1033G>C	p.Val345Leu	p.V345L	ENST00000377970	NM_002467.4	345	Gtc/Ctc																																																																														
CD276	0	MSKCC	GRCh37	15	73994698	73994698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	47	217	0	ENST00000318443.5:c.182C>T	p.Ala61Val	p.A61V	ENST00000318443	NM_001024736.1	61	gCa/gTa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610079	10610079	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	19	238	0	ENST00000171111.5:c.631T>A	p.Phe211Ile	p.F211I	ENST00000171111	NM_203500.1	211	Ttt/Att																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52724243	52724243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	113	207	1	ENST00000322088.6:c.1375C>T	p.Arg459Cys	p.R459C	ENST00000322088	NM_014225.5	459	Cgc/Tgc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023549	31023549	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	73	194	0	ENST00000375687.4:c.3034G>T	p.Asp1012Tyr	p.D1012Y	ENST00000375687	NM_015338.5	1012	Gac/Tac																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186505016	186505235	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAAGATGCATGCCAGAGACTTCACAGTTTCTGCTCTGGTAAGAGGTGTTCTAAAATGTCTGGATTTCCACTAAAGCAGGATTCAGACTACAATATAGCTGCTAAGTGCTGTGTTGTCGTTCCCCCTGCTTAAAATAAAGTTGTTTCTTAACTATACCTGTCTGCTATTCTCCTGTAGCAGCCAGGGACGCTTGGTCTCATACATGTTGATTAAAATTAA	AGAAGATGCATGCCAGAGACTTCACAGTTTCTGCTCTGGTAAGAGGTGTTCTAAAATGTCTGGATTTCCACTAAAGCAGGATTCAGACTACAATATAGCTGCTAAGTGCTGTGTTGTCGTTCCCCCTGCTTAAAATAAAGTTGTTTCTTAACTATACCTGTCTGCTATTCTCCTGTAGCAGCCAGGGACGCTTGGTCTCATACATGTTGATTAAAATTAA	-			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	58	260	0	ENST00000323963.5:c.873_910-48del		p.X291_splice	ENST00000323963		291																																																																															
RB1	0	MSKCC	GRCh37	13	49050612	49050876	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAGGAGGATTTACAAAGAGTGGGTGTTTAATTGGGGATGGAATTAGGTAGTTATTCTGATTTTTAGATTTTTCATATCTTTTATTTGGTCCAATGAAGCAGAAAATTTAAATGAAGTTATTACCTTTGCCTGATTTTTGACACACCTCAAACTATAACTTGAGGTTGCTAACTATGAAACACTGGCATTTAATGATTTAAAGTAAAGAATTCTGTAATTTGTAGACTTCTGAGAAGTTCCAGAAAATAAATCAGATGGTATGTA	ACAGGAGGATTTACAAAGAGTGGGTGTTTAATTGGGGATGGAATTAGGTAGTTATTCTGATTTTTAGATTTTTCATATCTTTTATTTGGTCCAATGAAGCAGAAAATTTAAATGAAGTTATTACCTTTGCCTGATTTTTGACACACCTCAAACTATAACTTGAGGTTGCTAACTATGAAACACTGGCATTTAATGATTTAAAGTAAAGAATTCTGTAATTTGTAGACTTCTGAGAAGTTCCAGAAAATAAATCAGATGGTATGTA	-			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3	45	8	0	ENST00000267163.4:c.2521-221_2564del		p.X841_splice	ENST00000267163	NM_000321.2	841																																																																															
TP53	0	MSKCC	GRCh37	17	7578208	7578217	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCGAAAAG	TGTCGAAAAG	-			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	97	293	0	ENST00000269305.4:c.632_641del	p.Thr211IlefsTer33	p.T211Ifs*33	ENST00000269305	NM_001126112.2	211	aCTTTTCGACAt/at																																																																														
EGFR	0	MSKCC	GRCh37	7	55259456	55259478	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAGCCAGGAACGTACTGGTGA	GGCAGCCAGGAACGTACTGGTGA	-			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	28	180	0	ENST00000275493.2:c.2514_2536del	p.Ala839AsnfsTer50	p.A839Nfs*50	ENST00000275493	NM_005228.3	838	ctGGCAGCCAGGAACGTACTGGTGAaa/ctaa																																																																														
IRF4	0	MSKCC	GRCh37	6	401602	401611	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCCACCTG	GAGCCACCTG	-			P-0012557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	42	178	0	ENST00000380956.4:c.927_936del	p.Ser309ArgfsTer72	p.S309Rfs*72	ENST00000380956	NM_001195286.1	308	ctGAGCCACCTG/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	404	409	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MSH2	0	MSKCC	GRCh37	2	47705581	47705581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	386	552	0	ENST00000233146.2:c.2381T>C	p.Ile794Thr	p.I794T	ENST00000233146	NM_000251.2	794	aTa/aCa																																																																														
FAM175A	0	MSKCC	GRCh37	4	84406166	84406166	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	260	414	0	ENST00000321945.7:c.60C>G	p.Phe20Leu	p.F20L	ENST00000321945	NM_139076.2	20	ttC/ttG																																																																														
APC	0	MSKCC	GRCh37	5	112163689	112163689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	369	492	0	ENST00000257430.4:c.1612G>A	p.Glu538Lys	p.E538K	ENST00000257430	NM_000038.5	538	Gaa/Aaa																																																																														
CBL	0	MSKCC	GRCh37	11	119168188	119168188	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	217	376	0	ENST00000264033.4:c.2248T>C	p.Phe750Leu	p.F750L	ENST00000264033	NM_005188.3	750	Ttt/Ctt																																																																														
ARID2	0	MSKCC	GRCh37	12	46244460	46244460	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	314	540	0	ENST00000334344.6:c.2554C>T	p.Gln852Ter	p.Q852*	ENST00000334344	NM_152641.2	852	Cag/Tag																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50484291	50484291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	374	534	0	ENST00000394963.4:c.1051C>T	p.Arg351Cys	p.R351C	ENST00000394963	NM_003076.4	351	Cgt/Tgt																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66526573	66526573	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	216	415	0	ENST00000358598.2:c.1129G>C	p.Val377Leu	p.V377L	ENST00000358598	NM_212471.2	377	Gtg/Ctg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25973215	25973215	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	251	358	0	ENST00000435504.4:c.1210del	p.Thr404ProfsTer19	p.T404Pfs*19	ENST00000435504		404	Acc/cc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	212	758	2	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	338	717	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	428	571	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	84	321	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	22	285	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	220	638	0	ENST00000269305.4:c.464C>T	p.Thr155Ile	p.T155I	ENST00000269305	NM_001126112.2	155	aCc/aTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952139	178952139	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	94	429	0	ENST00000263967.3:c.3194A>T	p.His1065Leu	p.H1065L	ENST00000263967	NM_006218.2	1065	cAt/cTt																																																																														
GLI1	0	MSKCC	GRCh37	12	57863306	57863306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	117	1061	2	ENST00000228682.2:c.1401G>A	p.Met467Ile	p.M467I	ENST00000228682	NM_005269.2	467	atG/atA																																																																														
TOP1	0	MSKCC	GRCh37	20	39750419	39750419	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	98	655	1	ENST00000361337.2:c.2036del	p.Lys679ArgfsTer5	p.K679Rfs*5	ENST00000361337	NM_003286.2	678	gcA/gc																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	876	560	1	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
EP300	0	MSKCC	GRCh37	22	41573321	41573321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	320	645	1	ENST00000263253.7:c.5606C>T	p.Pro1869Leu	p.P1869L	ENST00000263253	NM_001429.3	1869	cCc/cTc																																																																														
EP300	2033	MSKCC	GRCh37	22	41566521	41566521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	972	530	0	ENST00000263253.7:c.4398G>C	p.Trp1466Cys	p.W1466C	ENST00000263253	NM_001429.3	1466	tgG/tgC																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1960	2145	549	0	ENST00000263967.3:c.344G>C	p.Arg115Pro	p.R115P	ENST00000263967	NM_006218.2	115	cGa/cCa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	1145	319	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971110	21971110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	1145	319	0	ENST00000304494.5:c.248A>G	p.His83Arg	p.H83R	ENST00000304494	NM_000077.4	83	cAc/cGc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89448601	89448601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	211	451	2	ENST00000336596.2:c.1565G>A	p.Arg522His	p.R522H	ENST00000336596	NM_005233.5	522	cGc/cAc																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858189	27858189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	1175	784	3	ENST00000359303.2:c.382G>T	p.Ala128Ser	p.A128S	ENST00000359303	NM_003535.2	128	Gcg/Tcg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50455095	50455095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	184	386	0	ENST00000331340.3:c.642C>A	p.Ser214Arg	p.S214R	ENST00000331340	NM_006060.4	214	agC/agA																																																																														
SOX17	0	MSKCC	GRCh37	8	55372173	55372173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	148	201	0	ENST00000297316.4:c.863C>T	p.Ala288Val	p.A288V	ENST00000297316	NM_022454.3	288	gCg/gTg																																																																														
PGR	0	MSKCC	GRCh37	11	100999111	100999111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	724	777	0	ENST00000325455.5:c.691G>C	p.Glu231Gln	p.E231Q	ENST00000325455	NM_001202474.3	231	Gag/Cag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9916251	9916251	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	467	471	0	ENST00000330684.3:c.2038T>C	p.Phe680Leu	p.F680L	ENST00000330684	NM_001134407.1	680	Ttt/Ctt																																																																														
RNF43	0	MSKCC	GRCh37	17	56435749	56435749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	315	231	0	ENST00000407977.2:c.1388C>T	p.Ala463Val	p.A463V	ENST00000407977		463	gCc/gTc																																																																														
BTK	0	MSKCC	GRCh37	X	100611784	100611784	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	544	283	0	ENST00000308731.7:c.1337C>A	p.Ala446Asp	p.A446D	ENST00000308731	NM_000061.2	446	gCc/gAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144134	11144141	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGCCA	TCCAGCCA	-			P-0012587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	586	506	0	ENST00000344626.4:c.3716_3723del	p.Ser1239Ter	p.S1239*	ENST00000344626	NM_003072.3	1239	TCCAGCCAt/t																																																																														
TP53	0	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012594-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	23	751	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
CHEK1	0	MSKCC	GRCh37	11	125499161	125499161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012594-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	33	530	0	ENST00000428830.2:c.324G>C	p.Gln108His	p.Q108H	ENST00000428830	NM_001114121.2	108	caG/caC																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	112	318	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0012625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	72	317	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																														
APC	0	MSKCC	GRCh37	5	112173661	112173662	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0012625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	69	342	0	ENST00000257430.4:c.2373_2374del	p.His791GlnfsTer7	p.H791Qfs*7	ENST00000257430	NM_000038.5	790	agACac/agac																																																																														
STAG2	0	MSKCC	GRCh37	X	123197759	123197759	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	68	469	0	ENST00000218089.9:c.1883T>C	p.Val628Ala	p.V628A	ENST00000218089	NM_001042749.1	628	gTt/gCt																																																																														
APC	0	MSKCC	GRCh37	5	112176015	112176039	+	frameshift_variant	Frame_Shift_Del	DEL	TAGAAGAATGTATTATTTCTGCCAT	TAGAAGAATGTATTATTTCTGCCAT	-			P-0012625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	57	223	0	ENST00000257430.4:c.4724_4748del	p.Leu1575ArgfsTer67	p.L1575Rfs*67	ENST00000257430	NM_000038.5	1575	cTAGAAGAATGTATTATTTCTGCCATg/cg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	92	212	0				ENST00000310581	NM_198253.2																																																																																
SRC	0	MSKCC	GRCh37	20	36012765	36012765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	62	155	1	ENST00000358208.4:c.209C>T	p.Ser70Leu	p.S70L	ENST00000358208		70	tCg/tTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55219004	55219004	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	67	319	0	ENST00000275493.2:c.577A>G	p.Ser193Gly	p.S193G	ENST00000275493	NM_005228.3	193	Agc/Ggc																																																																														
TP53	0	MSKCC	GRCh37	17	7576876	7576904	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGTGGTTTCTTCTTTGGCTGGGGAGAG	CCAGTGGTTTCTTCTTTGGCTGGGGAGAG	-			P-0012628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	112	327	2	ENST00000269305.4:c.942_970del	p.Ser315TrpfsTer12	p.S315Wfs*12	ENST00000269305	NM_001126112.2	314	tcCTCTCCCCAGCCAAAGAAGAAACCACTGGat/tcat																																																																														
IGF1R	0	MSKCC	GRCh37	15	99478132	99478132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	336	635	0	ENST00000268035.6:c.3036G>A	p.Met1012Ile	p.M1012I	ENST00000268035	NM_000875.3	1012	atG/atA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	36	464	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1300	35	731	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																														
BAP1	0	MSKCC	GRCh37	3	52439258	52439528	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGCTGTGGGATGGGGCTTGTGCGCATGAACCAGCCGCCTCCTCTGCACCATCTGAGACAGGGCAAGAACACAGGCAGGACCTCCAGTAGGATCTCCAAGAAAAGCTCACAGTCTCCCCGGCCCTGTGAACCAGCACTTCCCAGAGAAGAACAGCCCAGCCAGCTGGTGCAATGGGAGTCAGCAAGCTCTAAGTCATGATCCCGCAATGAGACAGGGCAAAGAATGAGATGGGAAAAAAGAAGCAGGAAGAAAAAAAAAAAAAAAAAAAA	AGGGCTGTGGGATGGGGCTTGTGCGCATGAACCAGCCGCCTCCTCTGCACCATCTGAGACAGGGCAAGAACACAGGCAGGACCTCCAGTAGGATCTCCAAGAAAAGCTCACAGTCTCCCCGGCCCTGTGAACCAGCACTTCCCAGAGAAGAACAGCCCAGCCAGCTGGTGCAATGGGAGTCAGCAAGCTCTAAGTCATGATCCCGCAATGAGACAGGGCAAAGAATGAGATGGGAAAAAAGAAGCAGGAAGAAAAAAAAAAAAAAAAAAAA	-			P-0012648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	75	595	0	ENST00000460680.1:c.932-218_984del		p.X311_splice	ENST00000460680	NM_004656.3	311																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	28	389	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0012658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	39	337	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	827	324	1	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111907677	111907677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1763	120	420	0	ENST00000393256.3:c.451G>C	p.Glu151Gln	p.E151Q	ENST00000393256	NM_006538.4	151	Gag/Cag																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066675	94066675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	593	467	2	ENST00000369303.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000369303	NM_004440.3	362	Gat/Aat																																																																														
NF1	0	MSKCC	GRCh37	17	29556367	29556367	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	103	327	0	ENST00000358273.4:c.2734C>T	p.Gln912Ter	p.Q912*	ENST00000358273	NM_001042492.2	912	Caa/Taa																																																																														
POLE	0	MSKCC	GRCh37	12	133212495	133212495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	290	337	0	ENST00000320574.5:c.5794C>T	p.Arg1932Cys	p.R1932C	ENST00000320574	NM_006231.2	1932	Cgt/Tgt																																																																														
CDC73	0	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	315	300	0	ENST00000367435.3:c.440G>A	p.Arg147His	p.R147H	ENST00000367435	NM_024529.4	147	cGc/cAc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096669	178096669	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	272	215	0	ENST00000397062.3:c.662C>G	p.Thr221Arg	p.T221R	ENST00000397062	NM_006164.4	221	aCa/aGa																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182683369	182683369	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1480	242	255	0	ENST00000292782.4:c.176C>A	p.Ser59Ter	p.S59*	ENST00000292782	NM_020640.2	59	tCa/tAa																																																																														
NBN	0	MSKCC	GRCh37	8	90947833	90947833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	79	222	0	ENST00000265433.3:c.2242C>T	p.Pro748Ser	p.P748S	ENST00000265433	NM_002485.4	748	Cct/Tct																																																																														
SYK	0	MSKCC	GRCh37	9	93606256	93606256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	107	340	0	ENST00000375746.1:c.76G>A	p.Glu26Lys	p.E26K	ENST00000375746	NM_001174167.1	26	Gaa/Aaa																																																																														
EGFL7	0	MSKCC	GRCh37	9	139566734	139566734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	989	367	0	ENST00000308874.7:c.818C>G	p.Ser273Trp	p.S273W	ENST00000308874		273	tCg/tGg																																																																														
PGR	0	MSKCC	GRCh37	11	100998327	100998327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	60	50	0	ENST00000325455.5:c.1475G>C	p.Arg492Pro	p.R492P	ENST00000325455	NM_001202474.3	492	cGg/cCg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435230	18435230	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	90	307	0	ENST00000266497.5:c.215A>G	p.Asp72Gly	p.D72G	ENST00000266497		72	gAc/gGc																																																																														
RAD51B	0	MSKCC	GRCh37	14	68353780	68353780	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	54	246	0	ENST00000487270.1:c.615A>T	p.Lys205Asn	p.K205N	ENST00000487270	NM_133509.3	205	aaA/aaT																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576129	88576129	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	407	389	0	ENST00000360948.2:c.1544A>G	p.Gln515Arg	p.Q515R	ENST00000360948	NM_001012338.2	515	cAg/cGg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858445	9858445	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	719	384	0	ENST00000330684.3:c.2956C>G	p.Leu986Val	p.L986V	ENST00000330684	NM_001134407.1	986	Ctt/Gtt																																																																														
ERCC4	0	MSKCC	GRCh37	16	14022015	14022015	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	306	320	0	ENST00000311895.7:c.715G>C	p.Glu239Gln	p.E239Q	ENST00000311895	NM_005236.2	239	Gaa/Caa																																																																														
ERCC4	0	MSKCC	GRCh37	16	14024566	14024566	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	74	249	0	ENST00000311895.7:c.793-1G>C		p.X265_splice	ENST00000311895	NM_005236.2	265																																																																															
NUP93	0	MSKCC	GRCh37	16	56875616	56875616	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	271	302	0	ENST00000308159.5:c.2221-1G>T		p.X741_splice	ENST00000308159	NM_014669.4	741																																																																															
NF1	0	MSKCC	GRCh37	17	29559864	29559864	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	339	229	0	ENST00000358273.4:c.3461A>T	p.Asn1154Ile	p.N1154I	ENST00000358273	NM_001042492.2	1154	aAt/aTt																																																																														
MALT1	0	MSKCC	GRCh37	18	56376723	56376723	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2362	396	456	0	ENST00000348428.3:c.763A>G	p.Ile255Val	p.I255V	ENST00000348428	NM_006785.3	255	Att/Gtt																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627706	14627706	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1377	139	498	0	ENST00000254322.2:c.364G>T	p.Glu122Ter	p.E122*	ENST00000254322	NM_006145.1	122	Gag/Tag																																																																														
EP300	0	MSKCC	GRCh37	22	41513245	41513245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	410	344	0	ENST00000263253.7:c.149C>T	p.Ser50Phe	p.S50F	ENST00000263253	NM_001429.3	50	tCt/tTt																																																																														
RB1	0	MSKCC	GRCh37	13	48951082	48951086	+	frameshift_variant	Frame_Shift_Del	DEL	TACTG	TACTG	A			P-0012678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	400	209	0	ENST00000267163.4:c.1244_1248delinsA	p.Ile415LysfsTer4	p.I415Kfs*4	ENST00000267163	NM_000321.2	415	aTACTG/aA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	218	671	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	106	952	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	75	828	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	75	828	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28936392		P-0012688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	58	625	0	ENST00000342988.3:c.1477G>C	p.Asp493His	p.D493H	ENST00000342988	NM_005359.5	493	Gat/Cat																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871602	35871602	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs116801398		P-0012688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	83	810	1	ENST00000216797.5:c.904G>A	p.Glu302Lys	p.E302K	ENST00000216797	NM_020529.2	302	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	217	504	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	81	291	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603044	48603044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	42	257	0	ENST00000342988.3:c.1345C>T	p.Gln449Ter	p.Q449*	ENST00000342988	NM_005359.5	449	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112176030	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	123	366	0	ENST00000257430.4:c.4741delT	p.Ser1581LeufsTer69	p.S1581Lfs*69	ENST00000257430	NM_000038.5	1580	aTt/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	86	569	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMO	0	MSKCC	GRCh37	7	128850861	128850861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	142	726	0	ENST00000249373.3:c.1708G>T	p.Ala570Ser	p.A570S	ENST00000249373	NM_005631.4	570	Gcc/Tcc																																																																														
FLT4	0	MSKCC	GRCh37	5	180048182	180048182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	83	683	0	ENST00000261937.6:c.2091G>C	p.Met697Ile	p.M697I	ENST00000261937	NM_182925.4	697	atG/atC																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271224	26271224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1293	168	1198	1	ENST00000305910.3:c.389G>A	p.Arg130His	p.R130H	ENST00000305910	NM_003534.2	130	cGc/cAc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106523505	106523505	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	75	378	0	ENST00000359195.3:c.2657C>G	p.Thr886Arg	p.T886R	ENST00000359195	NM_002649.2	886	aCg/aGg																																																																														
PAK7	0	MSKCC	GRCh37	20	9561555	9561555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	27	375	0	ENST00000353224.5:c.227C>A	p.Pro76His	p.P76H	ENST00000353224	NM_177990.2	76	cCc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7579394	7579394	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	96	653	0	ENST00000269305.4:c.293del	p.Pro98LeufsTer25	p.P98Lfs*25	ENST00000269305	NM_001126112.2	98	cCt/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	50	628	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0012735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	45	784	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	270	549	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	221	459	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	104	291	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
APC	0	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	150	330	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	207	361	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																														
KDR	3791	MSKCC	GRCh37	4	55991403	55991403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	155	601	0	ENST00000263923.4:c.58G>A	p.Ala20Thr	p.A20T	ENST00000263923	NM_002253.2	20	Gcc/Acc																																																																														
MLL2	0	MSKCC	GRCh37	12	49445899	49445899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	202	838	0	ENST00000301067.7:c.1567C>T	p.Pro523Ser	p.P523S	ENST00000301067	NM_003482.3	523	Ccg/Tcg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41247905	41247905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	151	613	0	ENST00000357654.3:c.628C>G	p.Gln210Glu	p.Q210E	ENST00000357654	NM_007294.3	210	Caa/Gaa																																																																														
BAP1	0	MSKCC	GRCh37	3	52439883	52439883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	236	399	0	ENST00000460680.1:c.829C>T	p.Gln277Ter	p.Q277*	ENST00000460680	NM_004656.3	277	Caa/Taa																																																																														
TET2	0	MSKCC	GRCh37	4	106196508	106196508	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	65	507	0	ENST00000380013.4:c.4841C>G	p.Pro1614Arg	p.P1614R	ENST00000380013	NM_001127208.2	1614	cCc/cGc																																																																														
MET	0	MSKCC	GRCh37	7	116411649	116411649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	427	430	0	ENST00000397752.3:c.2828C>T	p.Thr943Ile	p.T943I	ENST00000397752	NM_000245.2	943	aCa/aTa																																																																														
MSH6	0	MSKCC	GRCh37	2	48027875	48027875	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	417	515	0	ENST00000234420.5:c.2753A>C	p.His918Pro	p.H918P	ENST00000234420	NM_000179.2	918	cAt/cCt																																																																														
PMS1	0	MSKCC	GRCh37	2	190718999	190718999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	65	295	0	ENST00000441310.2:c.1001C>A	p.Thr334Lys	p.T334K	ENST00000441310	NM_000534.4	334	aCg/aAg																																																																														
SETD2	0	MSKCC	GRCh37	3	47125490	47125490	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	62	728	0	ENST00000409792.3:c.5780A>T	p.Gln1927Leu	p.Q1927L	ENST00000409792	NM_014159.6	1927	cAg/cTg																																																																														
MLL3	0	MSKCC	GRCh37	7	151879322	151879322	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	240	352	0	ENST00000262189.6:c.5623C>T	p.Gln1875Ter	p.Q1875*	ENST00000262189	NM_170606.2	1875	Cag/Tag																																																																														
WT1	0	MSKCC	GRCh37	11	32456738	32456738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	65	214	0	ENST00000332351.3:c.154C>G	p.Arg52Gly	p.R52G	ENST00000332351	NM_024426.4	52	Cgt/Ggt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515220	103515220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	75	606	0	ENST00000355739.4:c.1721C>T	p.Ala574Val	p.A574V	ENST00000355739	NM_000123.3	574	gCt/gTt																																																																														
TCF3	0	MSKCC	GRCh37	19	1632406	1632406	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	66	556	0	ENST00000344749.5:c.146-2A>C		p.X49_splice	ENST00000344749	NM_001136139.2	49																																																																															
TP53	0	MSKCC	GRCh37	17	7572934	7572935	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0012785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	381	758	0	ENST00000269305.4:c.1174_1175del	p.Ser392ArgfsTer78	p.S392Rfs*78	ENST00000269305	NM_001126112.2	392	TCa/a																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0012816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	98	477	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
PGR	0	MSKCC	GRCh37	11	100996759	100996759	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	70	797	0	ENST00000325455.5:c.1768T>G	p.Phe590Val	p.F590V	ENST00000325455	NM_001202474.3	590	Ttc/Gtc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591238	67591265	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTTTTTCAGGTGGTTGACTCAAAAAGG	TGTTTTTCAGGTGGTTGACTCAAAAAGG	-			P-0012816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	61	332	0	ENST00000274335.5:c.1746-6_1767del		p.X582_splice	ENST00000274335		582																																																																															
PTEN	0	MSKCC	GRCh37	10	89692891	89692905	+	inframe_deletion	In_Frame_Del	DEL	AGCTGGAAAGGGACG	AGCTGGAAAGGGACG	-			P-0012816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	41	241	0	ENST00000371953.3:c.376_390del	p.Ala126_Arg130del	p.A126_R130del	ENST00000371953	NM_000314.4	125	aaAGCTGGAAAGGGACGa/aaa																																																																														
CTCF	0	MSKCC	GRCh37	16	67650753	67650756	+	protein_altering_variant	In_Frame_Del	DEL	GTTC	GTTC	T			P-0012816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	97	524	0	ENST00000264010.4:c.1058_1061delinsT	p.Cys353_Ser354delinsPhe	p.C353_S354delinsF	ENST00000264010	NM_006565.3	353	tGTTCc/tTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89717705	89717713	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCAGCCG	CCTCAGCCG	T			P-0012816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	69	362	0	ENST00000371953.3:c.730_738delinsT	p.Pro244PhefsTer6	p.P244Ffs*6	ENST00000371953	NM_000314.4	244	CCTCAGCCG/T																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	260	483	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	172	712	1	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	274	487	1	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	142	407	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66766357	66766389	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-			P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	50	48	0	ENST00000374690.3:c.1388_1420delGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG	p.Gly463_Gly473del	p.G463_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	330	562	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176133025	176133025	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	258	411	0	ENST00000367669.3:c.568A>G	p.Asn190Asp	p.N190D	ENST00000367669	NM_022457.5	190	Aat/Gat																																																																														
AURKA	0	MSKCC	GRCh37	20	54961423	54961423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	24	187	0	ENST00000312783.6:c.209C>T	p.Pro70Leu	p.P70L	ENST00000312783	NM_198436.1	70	cCg/cTg																																																																														
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			14	241	434	1	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
PARK2	0	MSKCC	GRCh37	6	162683785	162683785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	16	377	0	ENST00000366898.1:c.184G>C	p.Asp62His	p.D62H	ENST00000366898	NM_004562.2	62	Gat/Cat																																																																														
KDR	0	MSKCC	GRCh37	4	55960993	55960993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	56	451	0	ENST00000263923.4:c.2947C>T	p.Leu983Phe	p.L983F	ENST00000263923	NM_002253.2	983	Ctc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	444	506	1	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106161	27106161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	201	425	0	ENST00000324856.7:c.5772G>T	p.Glu1924Asp	p.E1924D	ENST00000324856	NM_006015.4	1924	gaG/gaT																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794487	242794487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	146	365	0	ENST00000334409.5:c.455C>A	p.Pro152His	p.P152H	ENST00000334409	NM_005018.2	152	cCc/cAc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026096	71026096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	58	419	0	ENST00000318789.4:c.1526G>T	p.Trp509Leu	p.W509L	ENST00000318789	NM_032682.5	509	tGg/tTg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55140727	55140727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	110	507	0	ENST00000257290.5:c.1588G>T	p.Ala530Ser	p.A530S	ENST00000257290	NM_006206.4	530	Gca/Tca																																																																														
FAT1	0	MSKCC	GRCh37	4	187516919	187516919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	115	508	1	ENST00000441802.2:c.13062G>T	p.Gln4354His	p.Q4354H	ENST00000441802	NM_005245.3	4354	caG/caT																																																																														
SMO	0	MSKCC	GRCh37	7	128850945	128850945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	59	312	0	ENST00000249373.3:c.1792G>A	p.Gly598Arg	p.G598R	ENST00000249373	NM_005631.4	598	Ggg/Agg																																																																														
MLL3	0	MSKCC	GRCh37	7	151873966	151873966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	41	527	0	ENST00000262189.6:c.8572G>A	p.Ala2858Thr	p.A2858T	ENST00000262189	NM_170606.2	2858	Gct/Act																																																																														
GATA3	0	MSKCC	GRCh37	10	8097679	8097679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	30	417	0	ENST00000346208.3:c.61G>A	p.Gly21Arg	p.G21R	ENST00000346208		21	Ggg/Agg																																																																														
RET	0	MSKCC	GRCh37	10	43615015	43615015	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	35	482	1	ENST00000355710.3:c.2429G>T	p.Gly810Val	p.G810V	ENST00000355710	NM_020975.4	810	gGc/gTc																																																																														
WT1	0	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	39	389	2	ENST00000332351.3:c.1073C>A	p.Thr358Lys	p.T358K	ENST00000332351	NM_024426.4	358	aCg/aAg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56486539	56486539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	157	515	0	ENST00000267101.3:c.1118G>T	p.Trp373Leu	p.W373L	ENST00000267101	NM_001982.3	373	tGg/tTg																																																																														
POLE	0	MSKCC	GRCh37	12	133256177	133256177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	107	507	0	ENST00000320574.5:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000320574	NM_006231.2	162	Gat/Tat																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872356	35872356	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	144	639	0	ENST00000216797.5:c.547G>T	p.Gly183Cys	p.G183C	ENST00000216797	NM_020529.2	183	Ggc/Tgc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88483854	88483854	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			33	20	422	0	ENST00000360948.2:c.1716G>T	p.Lys572Asn	p.K572N	ENST00000360948	NM_001012338.2	572	aaG/aaT																																																																														
AXL	0	MSKCC	GRCh37	19	41744382	41744382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	130	651	0	ENST00000301178.4:c.1004del	p.Gly335AlafsTer31	p.G335Afs*31	ENST00000301178	NM_021913.4	334	ctG/ct																																																																														
HNF1A	0	MSKCC	GRCh37	12	121416650	121416652	+	missense_variant	Missense_Mutation	ONP	ATC	ATC	CTG			P-0012833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	56	495	0	ENST00000257555.6:c.79_81delinsCTG	p.Ile27Leu	p.I27L	ENST00000257555		27	ATC/CTG																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	484	702	1	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
CCND1	0	MSKCC	GRCh37	11	69466022	69466022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	361	622	0	ENST00000227507.2:c.860C>T	p.Pro287Leu	p.P287L	ENST00000227507	NM_053056.2	287	cCc/cTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967209	93967209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	375	672	0	ENST00000369303.4:c.2143G>A	p.Glu715Lys	p.E715K	ENST00000369303	NM_004440.3	715	Gaa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8317921	8317921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	129	493	1	ENST00000356435.5:c.5692C>T	p.Arg1898Cys	p.R1898C	ENST00000356435		1898	Cgt/Tgt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351871	89351872	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1478	704	1283	2	ENST00000301030.4:c.1078_1079delinsTT	p.Pro360Leu	p.P360L	ENST00000301030	NM_001256183.1	360	CCg/TTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212495315	212495315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	192	397	0	ENST00000342788.4:c.1951C>T	p.Pro651Ser	p.P651S	ENST00000342788	NM_005235.2	651	Ccc/Tcc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794430	242794430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	347	706	0	ENST00000334409.5:c.512T>C	p.Val171Ala	p.V171A	ENST00000334409	NM_005018.2	171	gTt/gCt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52582147	52582147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	426	599	2	ENST00000394830.3:c.4681C>T	p.Arg1561Cys	p.R1561C	ENST00000394830	NM_018313.4	1561	Cgc/Tgc																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185146820	185146820	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	256	340	0	ENST00000265026.3:c.451A>G	p.Thr151Ala	p.T151A	ENST00000265026	NM_004721.4	151	Act/Gct																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361204	66361204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	244	370	0	ENST00000273854.3:c.968C>T	p.Pro323Leu	p.P323L	ENST00000273854	NM_004439.5	323	cCa/cTa																																																																														
TET2	0	MSKCC	GRCh37	4	106156110	106156110	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	327	558	0	ENST00000380013.4:c.1011A>T	p.Glu337Asp	p.E337D	ENST00000380013	NM_001127208.2	337	gaA/gaT																																																																														
TET2	0	MSKCC	GRCh37	4	106190872	106190872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	241	359	1	ENST00000380013.4:c.4150G>A	p.Asp1384Asn	p.D1384N	ENST00000380013	NM_001127208.2	1384	Gac/Aac																																																																														
FAT1	0	MSKCC	GRCh37	4	187531139	187531139	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	275	447	0	ENST00000441802.2:c.9884A>T	p.Tyr3295Phe	p.Y3295F	ENST00000441802	NM_005245.3	3295	tAt/tTt																																																																														
FLT4	0	MSKCC	GRCh37	5	180049799	180049799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	510	766	6	ENST00000261937.6:c.1589C>T	p.Ala530Val	p.A530V	ENST00000261937	NM_182925.4	530	gCc/gTc																																																																														
ROS1	0	MSKCC	GRCh37	6	117662402	117662402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	303	548	0	ENST00000368508.3:c.4975C>T	p.Pro1659Ser	p.P1659S	ENST00000368508	NM_002944.2	1659	Cca/Tca																																																																														
ROS1	0	MSKCC	GRCh37	6	117704638	117704638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	345	507	1	ENST00000368508.3:c.2338G>A	p.Asp780Asn	p.D780N	ENST00000368508	NM_002944.2	780	Gac/Aac																																																																														
CARD11	0	MSKCC	GRCh37	7	2959079	2959079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	284	566	0	ENST00000396946.4:c.2437G>A	p.Glu813Lys	p.E813K	ENST00000396946	NM_032415.4	813	Gag/Aag																																																																														
MET	0	MSKCC	GRCh37	7	116436018	116436018	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	432	598	1	ENST00000397752.3:c.4013C>A	p.Ser1338Ter	p.S1338*	ENST00000397752	NM_000245.2	1338	tCa/tAa																																																																														
MLL3	0	MSKCC	GRCh37	7	151864314	151864314	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	404	736	0	ENST00000262189.6:c.9667G>T	p.Gly3223Trp	p.G3223W	ENST00000262189	NM_170606.2	3223	Ggg/Tgg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8319898	8319898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	162	635	0	ENST00000356435.5:c.5603G>A	p.Gly1868Glu	p.G1868E	ENST00000356435		1868	gGa/gAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8404570	8404570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	325	616	0	ENST00000356435.5:c.4177G>A	p.Asp1393Asn	p.D1393N	ENST00000356435		1393	Gat/Aat																																																																														
PAX5	0	MSKCC	GRCh37	9	36966551	36966551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	395	733	0	ENST00000358127.4:c.775G>A	p.Glu259Lys	p.E259K	ENST00000358127	NM_001280556.1	259	Gag/Aag																																																																														
NUP93	0	MSKCC	GRCh37	16	56864548	56864548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	547	960	1	ENST00000308159.5:c.1036G>A	p.Gly346Arg	p.G346R	ENST00000308159	NM_014669.4	346	Gga/Aga																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245664	41245664	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	441	580	0	ENST00000357654.3:c.1884T>A	p.Ser628Arg	p.S628R	ENST00000357654	NM_007294.3	628	agT/agA																																																																														
PTPRS	0	MSKCC	GRCh37	19	5221201	5221201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	352	607	0	ENST00000357368.4:c.3265C>T	p.Leu1089Phe	p.L1089F	ENST00000357368	NM_002850.3	1089	Ctc/Ttc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5274350	5274350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	276	401	0	ENST00000357368.4:c.97C>T	p.Pro33Ser	p.P33S	ENST00000357368	NM_002850.3	33	Ccc/Tcc																																																																														
INSR	0	MSKCC	GRCh37	19	7143081	7143081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	194	333	0	ENST00000302850.5:c.2288C>T	p.Ser763Phe	p.S763F	ENST00000302850	NM_000208.2	763	tCc/tTc																																																																														
BRD4	0	MSKCC	GRCh37	19	15350050	15350050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	405	686	0	ENST00000263377.2:c.3602C>T	p.Ser1201Phe	p.S1201F	ENST00000263377	NM_058243.2	1201	tCc/tTc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42852481	42852481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	453	759	1	ENST00000398585.3:c.605G>A	p.Arg202Lys	p.R202K	ENST00000398585	NM_001135099.1	202	aGg/aAg																																																																														
EP300	0	MSKCC	GRCh37	22	41545820	41545820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1829	483	834	0	ENST00000263253.7:c.2435C>T	p.Ser812Phe	p.S812F	ENST00000263253	NM_001429.3	812	tCt/tTt																																																																														
CRLF2	0	MSKCC	GRCh37	X	1331457	1331457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	372	783	0	ENST00000381566.1:c.71G>A	p.Gly24Glu	p.G24E	ENST00000381566		24	gGa/gAa																																																																														
CRLF2	0	MSKCC	GRCh37	X	1331502	1331502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	277	644	1	ENST00000381566.1:c.26G>A	p.Gly9Glu	p.G9E	ENST00000381566		9	gGa/gAa																																																																														
BCOR	0	MSKCC	GRCh37	X	39935724	39935724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	524	375	0	ENST00000378444.4:c.148C>T	p.Pro50Ser	p.P50S	ENST00000378444	NM_001123385.1	50	Ccc/Tcc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53245137	53245137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	513	446	1	ENST00000375401.3:c.803C>T	p.Pro268Leu	p.P268L	ENST00000375401	NM_004187.3	268	cCc/cTc																																																																														
ATRX	0	MSKCC	GRCh37	X	76937752	76937752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	393	350	0	ENST00000373344.5:c.2996A>G	p.Lys999Arg	p.K999R	ENST00000373344	NM_000489.3	999	aAg/aGg																																																																														
ATRX	0	MSKCC	GRCh37	X	76937745	76937745	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	355	346	2	ENST00000373344.5:c.3003delA	p.Val1002Ter	p.V1002*	ENST00000373344	NM_000489.3	1001	aaA/aa																																																																														
NF1	0	MSKCC	GRCh37	17	29661997	29662016	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAACAGATGTACCCATCT	AAAAACAGATGTACCCATCT	-			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	208	410	0	ENST00000358273.4:c.5955_5974del	p.Glu1985AspfsTer17	p.E1985Dfs*17	ENST00000358273	NM_001042492.2	1985	gAAAAACAGATGTACCCATCT/g																																																																														
STK40	0	MSKCC	GRCh37	1	36807508	36807509	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	274	478	0	ENST00000373129.3:c.1155_1156delinsAA	p.Ala386Thr	p.A386T	ENST00000373129	NM_032017.1	385	ctGGcc/ctAAcc																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138202377	138202378	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	209	470	1	ENST00000237289.4:c.2294_2295delinsTT	p.Pro765Leu	p.P765L	ENST00000237289	NM_001270507.1	765	cCC/cTT																																																																														
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	190	655	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																														
CENPA	0	MSKCC	GRCh37	2	27016048	27016048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	212	1156	1	ENST00000335756.4:c.324C>A	p.Asp108Glu	p.D108E	ENST00000335756	NM_001809.3	108	gaC/gaA																																																																														
INPP4B	0	MSKCC	GRCh37	4	143033714	143033714	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1276	78	781	1	ENST00000262992.4:c.2257C>T	p.Gln753Ter	p.Q753*	ENST00000262992	NM_001101669.1	753	Cag/Tag																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31380516	31380516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	68	826	1	ENST00000328111.2:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000328111	NM_006892.3	336	Gcc/Acc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101172	41101172	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	26	323	0	ENST00000373198.4:c.1184T>A	p.Ile395Asn	p.I395N	ENST00000373198	NM_133170.3	395	aTc/aAc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880997	37880998	+	protein_altering_variant	In_Frame_Ins	INS	-	-	TTT			P-0012866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	337	768	1	ENST00000269571.5:c.2326_2327insTTT	p.Gly776delinsValCys	p.G776delinsVC	ENST00000269571		776	ggt/gTTTgt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	55	351	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	87	698	3	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054940	176054940	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0012876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	96	605	0	ENST00000367669.3:c.1113C>G	p.Tyr371Ter	p.Y371*	ENST00000367669	NM_022457.5	371	taC/taG																																																																														
PTEN	0	MSKCC	GRCh37	10	89690801	89690801	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0012876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	23	216	0	ENST00000371953.3:c.210-2A>C		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
NF1	0	MSKCC	GRCh37	17	29657387	29657387	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	78	660	0	ENST00000358273.4:c.5683A>C	p.Thr1895Pro	p.T1895P	ENST00000358273	NM_001042492.2	1895	Aca/Cca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087896	27087920	+	frameshift_variant	Frame_Shift_Del	DEL	CACCCAGTGGCCAGTCGGACAGCAT	CACCCAGTGGCCAGTCGGACAGCAT	-			P-0012876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	67	524	0	ENST00000324856.7:c.2185_2209del	p.Pro729CysfsTer5	p.P729Cfs*5	ENST00000324856	NM_006015.4	728	cCACCCAGTGGCCAGTCGGACAGCATc/cc																																																																														
MED12	0	MSKCC	GRCh37	X	70339306	70339334	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGTCAGCTTCAATCCTGCCAAGGTGAGAC	CGTCAGCTTCAATCCTGCCAAGGTGAGAC	-			P-0012876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	66	628	0	ENST00000374080.3:c.183_204+7del		p.X61_splice	ENST00000374080		61																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67591140	67591145	+	inframe_deletion	In_Frame_Del	DEL	ACCAAT	ACCAAT	-			P-0012876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	37	379	0	ENST00000274335.5:c.1735_1740del	p.Gln579_Tyr580del	p.Q579_Y580del	ENST00000274335		578	gACCAATac/gac																																																																														
PBRM1	0	MSKCC	GRCh37	3	52597493	52597493	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	150	477	0	ENST00000394830.3:c.3817C>T	p.Gln1273Ter	p.Q1273*	ENST00000394830	NM_018313.4	1273	Cag/Tag																																																																														
VHL	0	MSKCC	GRCh37	3	10191532	10191532	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	258	441	0	ENST00000256474.2:c.525C>A	p.Tyr175Ter	p.Y175*	ENST00000256474	NM_000551.3	175	taC/taA																																																																														
HNF1A	0	MSKCC	GRCh37	12	121438948	121438948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146855738		P-0012914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1703	189	872	0	ENST00000257555.6:c.1849G>A	p.Val617Ile	p.V617I	ENST00000257555		617	Gtc/Atc																																																																														
ATM	0	MSKCC	GRCh37	11	108180892	108180892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	161	381	0	ENST00000278616.4:c.5768C>T	p.Ser1923Phe	p.S1923F	ENST00000278616	NM_000051.3	1923	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	188	716	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	159	716	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32178669	32178669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	69	676	0	ENST00000375023.3:c.2725G>A	p.Asp909Asn	p.D909N	ENST00000375023	NM_004557.3	909	Gac/Aac																																																																														
KDM5A	0	MSKCC	GRCh37	12	427465	427465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	97	682	3	ENST00000399788.2:c.2704C>T	p.Arg902Trp	p.R902W	ENST00000399788	NM_001042603.1	902	Cgg/Tgg																																																																														
GLI1	0	MSKCC	GRCh37	12	57858477	57858477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	136	942	0	ENST00000228682.2:c.215G>A	p.Arg72Gln	p.R72Q	ENST00000228682	NM_005269.2	72	cGg/cAg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271828	15271828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	43	349	1	ENST00000263388.2:c.6611C>T	p.Pro2204Leu	p.P2204L	ENST00000263388	NM_000435.2	2204	cCg/cTg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53245152	53245152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	47	744	2	ENST00000375401.3:c.788A>G	p.Glu263Gly	p.E263G	ENST00000375401	NM_004187.3	263	gAg/gGg																																																																														
CDK12	0	MSKCC	GRCh37	17	37657640	37657656	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAATTTCCTGCATCG	AAGAATTTCCTGCATCG	-			P-0012930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	170	441	0	ENST00000447079.4:c.2557_2573del	p.Lys853GlyfsTer3	p.K853Gfs*3	ENST00000447079	NM_015083.1	853	AAGAATTTCCTGCATCGg/g																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	111	535	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
KIT	0	MSKCC	GRCh37	4	55599321	55599321	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	38	537	0	ENST00000288135.5:c.2447A>T	p.Asp816Val	p.D816V	ENST00000288135	NM_000222.2	816	gAc/gTc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78433871	78433871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	58	526	1	ENST00000370768.2:c.228G>T	p.Lys76Asn	p.K76N	ENST00000370768	NM_003902.3	76	aaG/aaT																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266803	198266803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	49	528	0	ENST00000335508.6:c.2129C>A	p.Ala710Asp	p.A710D	ENST00000335508	NM_012433.2	710	gCt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0013041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	50	340	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	16	406	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
ATM	0	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0013041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	94	390	1	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																																																														
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0013041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	143	595	0	ENST00000346208.3:c.1002_1003dup	p.Asp335GlyfsTer21	p.D335Gfs*21	ENST00000346208		333	-/GG																																																																														
SPEN	0	MSKCC	GRCh37	1	16261523	16261523	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	91	404	0	ENST00000375759.3:c.8788A>T	p.Lys2930Ter	p.K2930*	ENST00000375759	NM_015001.2	2930	Aag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	263	332	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	212	429	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ACVR1	0	MSKCC	GRCh37	2	158634644	158634644	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	225	650	0	ENST00000263640.3:c.542C>A	p.Ala181Glu	p.A181E	ENST00000263640	NM_001105.4	181	gCa/gAa																																																																														
MLL	0	MSKCC	GRCh37	11	118342677	118342677	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	40	359	0	ENST00000534358.1:c.803C>A	p.Thr268Lys	p.T268K	ENST00000534358	NM_005933.3	268	aCa/aAa																																																																														
RIT1	0	MSKCC	GRCh37	1	155874290	155874290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	222	314	0	ENST00000368323.3:c.241G>C	p.Glu81Gln	p.E81Q	ENST00000368323	NM_006912.5	81	Gag/Cag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266595	198266595	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	62	335	0	ENST00000335508.6:c.2241G>C	p.Leu747Phe	p.L747F	ENST00000335508	NM_012433.2	747	ttG/ttC																																																																														
BCL6	0	MSKCC	GRCh37	3	187446247	187446247	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	250	469	3	ENST00000232014.4:c.1441C>T	p.Gln481Ter	p.Q481*	ENST00000232014	NM_001130845.1	481	Cag/Tag																																																																														
FAT1	0	MSKCC	GRCh37	4	187541522	187541522	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	179	626	2	ENST00000441802.2:c.6218A>T	p.Asp2073Val	p.D2073V	ENST00000441802	NM_005245.3	2073	gAc/gTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187549687	187549687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	113	311	0	ENST00000441802.2:c.4554G>C	p.Glu1518Asp	p.E1518D	ENST00000441802	NM_005245.3	1518	gaG/gaC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	191	333	0				ENST00000310581	NM_198253.2																																																																																
MLL3	0	MSKCC	GRCh37	7	152008975	152008975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	96	448	0	ENST00000262189.6:c.647C>T	p.Ala216Val	p.A216V	ENST00000262189	NM_170606.2	216	gCt/gTt																																																																														
RAD21	0	MSKCC	GRCh37	8	117870667	117870667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1732	132	1008	0	ENST00000297338.2:c.405G>C	p.Leu135Phe	p.L135F	ENST00000297338	NM_006265.2	135	ttG/ttC																																																																														
PGR	0	MSKCC	GRCh37	11	100933314	100933314	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	368	1135	0	ENST00000325455.5:c.2076G>C	p.Met692Ile	p.M692I	ENST00000325455	NM_001202474.3	692	atG/atC																																																																														
ATM	0	MSKCC	GRCh37	11	108114719	108114719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	51	276	0	ENST00000278616.4:c.536C>T	p.Ser179Leu	p.S179L	ENST00000278616	NM_000051.3	179	tCa/tTa																																																																														
MLL2	0	MSKCC	GRCh37	12	49445980	49445980	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	116	781	0	ENST00000301067.7:c.1486C>G	p.Pro496Ala	p.P496A	ENST00000301067	NM_003482.3	496	Ccg/Gcg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487175	56487175	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	105	337	0	ENST00000267101.3:c.1321C>G	p.Leu441Val	p.L441V	ENST00000267101	NM_001982.3	441	Ctg/Gtg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435436	110435436	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	51	359	0	ENST00000375856.3:c.2965C>G	p.Pro989Ala	p.P989A	ENST00000375856	NM_003749.2	989	Cct/Gct																																																																														
BLM	0	MSKCC	GRCh37	15	91326080	91326080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	86	409	0	ENST00000355112.3:c.2584C>G	p.Leu862Val	p.L862V	ENST00000355112	NM_000057.2	862	Ctg/Gtg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807934	3807934	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148166625		P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	146	400	0	ENST00000262367.5:c.3485A>G	p.Asn1162Ser	p.N1162S	ENST00000262367	NM_004380.2	1162	aAc/aGc																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041704	14041704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	55	598	0	ENST00000311895.7:c.2251T>C	p.Tyr751His	p.Y751H	ENST00000311895	NM_005236.2	751	Tac/Cac																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348827	89348827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2367	233	1831	0	ENST00000301030.4:c.4123G>C	p.Glu1375Gln	p.E1375Q	ENST00000301030	NM_001256183.1	1375	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	80	563	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7579396	7579405	+	frameshift_variant	Frame_Shift_Del	DEL	GACAGAAGAT	GACAGAAGAT	-			P-0013077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	148	497	0	ENST00000269305.4:c.282_291del	p.Ser95LeufsTer25	p.S95Lfs*25	ENST00000269305	NM_001126112.2	94	tcATCTTCTGTC/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	52	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	52	257	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839712	27839712	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1934	176	1770	0	ENST00000328488.2:c.382G>C	p.Ala128Pro	p.A128P	ENST00000328488	NM_003533.2	128	Gcg/Ccg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117953	70117953	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	27	264	0	ENST00000245479.2:c.421A>G	p.Lys141Glu	p.K141E	ENST00000245479	NM_000346.3	141	Aag/Gag																																																																														
DNMT1	0	MSKCC	GRCh37	19	10292722	10292722	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	48	463	0	ENST00000340748.4:c.112G>T	p.Glu38Ter	p.E38*	ENST00000340748		38	Gaa/Taa																																																																														
RBM10	0	MSKCC	GRCh37	X	47045500	47045500	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	55	291	0	ENST00000329236.7:c.2233G>T	p.Glu745Ter	p.E745*	ENST00000329236	NM_001204466.1	745	Gaa/Taa																																																																														
SOX9	0	MSKCC	GRCh37	17	70117710	70117711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	151	894	0	ENST00000245479.2:c.179dup	p.Lys61GlufsTer191	p.K61Efs*191	ENST00000245479	NM_000346.3	60	ctg/cTtg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	142	464	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	240	837	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
CBL	0	MSKCC	GRCh37	11	119103199	119103224	+	frameshift_variant	Frame_Shift_Del	DEL	TAGCCCACCTTATATCTTAGACCTGC	TAGCCCACCTTATATCTTAGACCTGC	-			P-0013097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	158	514	0	ENST00000264033.4:c.239_264del	p.Ser80ThrfsTer15	p.S80Tfs*15	ENST00000264033	NM_005188.3	79	aaTAGCCCACCTTATATCTTAGACCTGCta/aata																																																																														
APC	0	MSKCC	GRCh37	5	112177136	112177136	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	147	595	0	ENST00000257430.4:c.5845del	p.Glu1949LysfsTer21	p.E1949Kfs*21	ENST00000257430	NM_000038.5	1949	Gaa/aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	311	446	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	323	511	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
CDH1	0	MSKCC	GRCh37	16	68856020	68856020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	463	912	0	ENST00000261769.5:c.1828C>T	p.Gln610Ter	p.Q610*	ENST00000261769	NM_004360.3	610	Cag/Tag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15968871	15968871	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	466	674	0	ENST00000268712.3:c.4879T>G	p.Leu1627Val	p.L1627V	ENST00000268712	NM_006311.3	1627	Ttg/Gtg																																																																														
CTCF	0	MSKCC	GRCh37	16	67654718	67654718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	338	630	0	ENST00000264010.4:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000264010	NM_006565.3	402	tCa/tTa																																																																														
RAD54L	0	MSKCC	GRCh37	1	46726512	46726512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	334	537	1	ENST00000371975.4:c.591G>A	p.Met197Ile	p.M197I	ENST00000371975	NM_003579.3	197	atG/atA																																																																														
JAK1	0	MSKCC	GRCh37	1	65309819	65309819	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	349	670	0	ENST00000342505.4:c.2331G>A	p.Trp777Ter	p.W777*	ENST00000342505	NM_002227.2	777	tgG/tgA																																																																														
NEGR1	0	MSKCC	GRCh37	1	72076716	72076716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	444	860	0	ENST00000357731.5:c.781G>A	p.Glu261Lys	p.E261K	ENST00000357731	NM_173808.2	261	Gag/Aag																																																																														
BAP1	0	MSKCC	GRCh37	3	52439909	52439909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	270	480	0	ENST00000460680.1:c.803C>G	p.Pro268Arg	p.P268R	ENST00000460680	NM_004656.3	268	cCa/cGa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	299	611	1	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914820	32914820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1489	630	1100	2	ENST00000380152.3:c.6328G>A	p.Asp2110Asn	p.D2110N	ENST00000380152		2110	Gat/Aat																																																																														
NCOR1	0	MSKCC	GRCh37	17	15968909	15968909	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	620	697	0	ENST00000268712.3:c.4841T>G	p.Leu1614Ter	p.L1614*	ENST00000268712	NM_006311.3	1614	tTa/tGa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15968933	15968933	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	626	712	0	ENST00000268712.3:c.4817T>C	p.Met1606Thr	p.M1606T	ENST00000268712	NM_006311.3	1606	aTg/aCg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15968940	15968940	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	621	724	0	ENST00000268712.3:c.4810T>A	p.Tyr1604Asn	p.Y1604N	ENST00000268712	NM_006311.3	1604	Tac/Aac																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699247	117699247	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	185	595	0	ENST00000369458.3:c.394A>G	p.Ile132Val	p.I132V	ENST00000369458	NM_024626.3	132	Atc/Gtc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78414934	78414934	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	60	491	0	ENST00000370768.2:c.1832A>C	p.Tyr611Ser	p.Y611S	ENST00000370768	NM_003902.3	611	tAt/tCt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53244022	53244022	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	97	390	0	ENST00000375401.3:c.971C>A	p.Ser324Ter	p.S324*	ENST00000375401	NM_004187.3	324	tCa/tAa																																																																														
VHL	0	MSKCC	GRCh37	3	10183820	10183820	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	59	305	0	ENST00000256474.2:c.291delC	p.Tyr98ThrfsTer61	p.Y98Tfs*61	ENST00000256474	NM_000551.3	97	Ccc/cc																																																																														
SETD2	0	MSKCC	GRCh37	3	47158133	47158134	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	137	781	0	ENST00000409792.3:c.4565dup	p.Asn1522LysfsTer7	p.N1522Kfs*7	ENST00000409792	NM_014159.6	1522	aat/aaAt																																																																														
SETD2	0	MSKCC	GRCh37	3	47163878	47163878	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	346	484	1	ENST00000409792.3:c.2248G>T	p.Glu750Ter	p.E750*	ENST00000409792	NM_014159.6	750	Gaa/Taa																																																																														
KIT	0	MSKCC	GRCh37	4	55589866	55589866	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0013188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	255	390	0	ENST00000288135.5:c.1346+2T>C		p.X449_splice	ENST00000288135	NM_000222.2	449																																																																															
KIT	0	MSKCC	GRCh37	4	55593578	55593606	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACAGAAACCCATGTATGAAGTACAGTGGA	ACAGAAACCCATGTATGAAGTACAGTGGA	-			P-0013188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	243	497	0	ENST00000288135.5:c.1648-3_1673del		p.X550_splice	ENST00000288135	NM_000222.2	550																																																																															
TSC2	0	MSKCC	GRCh37	16	2104393	2104393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	345	612	0	ENST00000219476.3:c.433G>A	p.Ala145Thr	p.A145T	ENST00000219476	NM_000548.3	145	Gcc/Acc																																																																														
KRAS	0	MSKCC	GRCh37	12	25378590	25378590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	320	461	0	ENST00000256078.4:c.408T>A	p.Ser136Arg	p.S136R	ENST00000256078	NM_033360.2	136	agT/agA																																																																														
BRD4	0	MSKCC	GRCh37	19	15366252	15366252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	40	828	0	ENST00000263377.2:c.1903C>T	p.His635Tyr	p.H635Y	ENST00000263377	NM_058243.2	635	Cac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	232	632	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MLL3	0	MSKCC	GRCh37	7	151845622	151845623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	252	675	0	ENST00000262189.6:c.13389dup	p.Phe4464LeufsTer9	p.F4464Lfs*9	ENST00000262189	NM_170606.2	4463	-/C																																																																														
TP53	0	MSKCC	GRCh37	17	7577054	7577055	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0013222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	414	809	0	ENST00000269305.4:c.883_884delinsG	p.Pro295ValfsTer50	p.P295Vfs*50	ENST00000269305	NM_001126112.2	295	CCt/Gt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	28	389	0				ENST00000310581	NM_198253.2																																																																																
RB1	0	MSKCC	GRCh37	13	49039374	49039374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	103	868	0	ENST00000267163.4:c.2359C>T	p.Arg787Ter	p.R787*	ENST00000267163	NM_000321.2	787	Cga/Tga																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64132915	64132915	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141809902		P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	100	726	0	ENST00000334205.4:c.1049C>T	p.Pro350Leu	p.P350L	ENST00000334205	NM_003942.2	350	cCt/cTt																																																																														
FLT1	0	MSKCC	GRCh37	13	29041073	29041073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	70	529	0	ENST00000282397.4:c.355G>A	p.Glu119Lys	p.E119K	ENST00000282397	NM_002019.4	119	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	88	447	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																														
AXIN1	0	MSKCC	GRCh37	16	396238	396238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	55	656	0	ENST00000262320.3:c.788C>T	p.Pro263Leu	p.P263L	ENST00000262320	NM_003502.3	263	cCc/cTc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99456443	99456443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	57	666	1	ENST00000268035.6:c.1760C>T	p.Thr587Ile	p.T587I	ENST00000268035	NM_000875.3	587	aCc/aTc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139714	55139714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	50	492	0	ENST00000257290.5:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000257290	NM_006206.4	459	Gaa/Aaa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5239002	5239002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	52	819	0	ENST00000357368.4:c.1777C>T	p.Arg593Cys	p.R593C	ENST00000357368	NM_002850.3	593	Cgc/Tgc																																																																														
TBX3	0	MSKCC	GRCh37	12	115114126	115114126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	104	637	0	ENST00000257566.3:c.1091A>G	p.Asn364Ser	p.N364S	ENST00000257566	NM_016569.3	364	aAc/aGc																																																																														
TP63	0	MSKCC	GRCh37	3	189607245	189607245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	128	840	0	ENST00000264731.3:c.1624C>T	p.Pro542Ser	p.P542S	ENST00000264731	NM_003722.4	542	Ccg/Tcg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367239	50367239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	76	385	0	ENST00000331340.3:c.46G>A	p.Glu16Lys	p.E16K	ENST00000331340	NM_006060.4	16	Gaa/Aaa																																																																														
MTOR	0	MSKCC	GRCh37	1	11272479	11272479	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	77	622	0	ENST00000361445.4:c.3451T>C	p.Tyr1151His	p.Y1151H	ENST00000361445	NM_004958.3	1151	Tat/Cat																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932227	36932227	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147017250		P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	73	1033	2	ENST00000361632.4:c.2242G>A	p.Asp748Asn	p.D748N	ENST00000361632		748	Gat/Aat																																																																														
MPL	0	MSKCC	GRCh37	1	43805178	43805178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	56	595	2	ENST00000372470.3:c.628C>T	p.Pro210Ser	p.P210S	ENST00000372470	NM_005373.2	210	Cca/Tca																																																																														
JUN	0	MSKCC	GRCh37	1	59248685	59248685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	112	739	0	ENST00000371222.2:c.58C>T	p.Pro20Ser	p.P20S	ENST00000371222	NM_002228.3	20	Ccg/Tcg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843430	156843430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	29	292	0	ENST00000524377.1:c.856G>A	p.Ala286Thr	p.A286T	ENST00000524377	NM_002529.3	286	Gcc/Acc																																																																														
IKBKE	0	MSKCC	GRCh37	1	206666629	206666629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	80	630	1	ENST00000367120.3:c.1963C>T	p.Gln655Ter	p.Q655*	ENST00000367120	NM_014002.3	655	Cag/Tag																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25505396	25505396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	44	672	1	ENST00000264709.3:c.362C>T	p.Ala121Val	p.A121V	ENST00000264709	NM_175629.2	121	gCa/gTa																																																																														
ALK	0	MSKCC	GRCh37	2	29498051	29498051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	93	818	2	ENST00000389048.3:c.1955C>T	p.Ser652Leu	p.S652L	ENST00000389048	NM_004304.4	652	tCa/tTa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212295725	212295725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	46	666	0	ENST00000342788.4:c.2588G>A	p.Gly863Glu	p.G863E	ENST00000342788	NM_005235.2	863	gGg/gAg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259122	89259122	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142484873		P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	56	573	0	ENST00000336596.2:c.266G>A	p.Arg89Lys	p.R89K	ENST00000336596	NM_005233.5	89	aGg/aAg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66286206	66286206	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138678484		P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	88	749	0	ENST00000273854.3:c.1480C>T	p.Arg494Cys	p.R494C	ENST00000273854	NM_004439.5	494	Cgt/Tgt																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66356298	66356298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	46	615	1	ENST00000273854.3:c.1199C>T	p.Ser400Phe	p.S400F	ENST00000273854	NM_004439.5	400	tCc/tTc																																																																														
IL7R	0	MSKCC	GRCh37	5	35876566	35876566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	21	283	0	ENST00000303115.3:c.1358C>T	p.Ser453Phe	p.S453F	ENST00000303115	NM_002185.3	453	tCc/tTc																																																																														
NSD1	0	MSKCC	GRCh37	5	176686992	176686992	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	56	686	0	ENST00000439151.2:c.4969C>T	p.Arg1657Trp	p.R1657W	ENST00000439151	NM_022455.4	1657	Cgg/Tgg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169159	32169159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	55	643	1	ENST00000375023.3:c.3874G>A	p.Glu1292Lys	p.E1292K	ENST00000375023	NM_004557.3	1292	Gag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32187545	32187545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	104	608	0	ENST00000375023.3:c.1334C>T	p.Pro445Leu	p.P445L	ENST00000375023	NM_004557.3	445	cCc/cTc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50444336	50444336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	122	537	0	ENST00000331340.3:c.266G>A	p.Gly89Glu	p.G89E	ENST00000331340	NM_006060.4	89	gGa/gAa																																																																														
HGF	0	MSKCC	GRCh37	7	81381523	81381523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	109	803	0	ENST00000222390.5:c.538C>T	p.Pro180Ser	p.P180S	ENST00000222390	NM_000601.4	180	Cct/Tct																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508583	106508583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	67	359	0	ENST00000359195.3:c.577C>T	p.Pro193Ser	p.P193S	ENST00000359195	NM_002649.2	193	Ccc/Tcc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98242713	98242713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	128	616	0	ENST00000331920.6:c.904C>T	p.Pro302Ser	p.P302S	ENST00000331920	NM_000264.3	302	Cca/Tca																																																																														
MLL2	0	MSKCC	GRCh37	12	49420079	49420079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	117	744	1	ENST00000301067.7:c.15670C>T	p.Arg5224Cys	p.R5224C	ENST00000301067	NM_003482.3	5224	Cgt/Tgt																																																																														
MLL2	0	MSKCC	GRCh37	12	49446806	49446806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	103	701	0	ENST00000301067.7:c.1004C>T	p.Pro335Leu	p.P335L	ENST00000301067	NM_003482.3	335	cCc/cTc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99478067	99478067	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	79	684	3	ENST00000268035.6:c.2971G>T	p.Glu991Ter	p.E991*	ENST00000268035	NM_000875.3	991	Gag/Tag																																																																														
AXIN1	0	MSKCC	GRCh37	16	354425	354425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	63	744	0	ENST00000262320.3:c.1133C>T	p.Pro378Leu	p.P378L	ENST00000262320	NM_003502.3	378	cCg/cTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829622	72829622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	84	1179	0	ENST00000268489.5:c.6959A>G	p.Tyr2320Cys	p.Y2320C	ENST00000268489	NM_006885.3	2320	tAc/tGc																																																																														
NF1	0	MSKCC	GRCh37	17	29665158	29665158	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	86	429	1	ENST00000358273.4:c.6819+1G>A		p.X2273_splice	ENST00000358273	NM_001042492.2	2273																																																																															
NF1	0	MSKCC	GRCh37	17	29687617	29687617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	157	824	2	ENST00000358273.4:c.8273C>T	p.Pro2758Leu	p.P2758L	ENST00000358273	NM_001042492.2	2758	cCc/cTc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39584479	39584479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	63	582	0	ENST00000262039.4:c.1144G>A	p.Ala382Thr	p.A382T	ENST00000262039	NM_002647.2	382	Gcc/Acc																																																																														
MALT1	0	MSKCC	GRCh37	18	56390345	56390345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	104	996	1	ENST00000348428.3:c.1084C>T	p.Pro362Ser	p.P362S	ENST00000348428	NM_006785.3	362	Cct/Tct																																																																														
DNMT1	0	MSKCC	GRCh37	19	10252870	10252870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	37	487	0	ENST00000340748.4:c.3095C>T	p.Pro1032Leu	p.P1032L	ENST00000340748		1032	cCa/cTa																																																																														
AXL	0	MSKCC	GRCh37	19	41749552	41749552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	283	1035	0	ENST00000301178.4:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000301178	NM_021913.4	493	Gaa/Aaa																																																																														
CD79A	0	MSKCC	GRCh37	19	42381388	42381388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	196	980	3	ENST00000221972.3:c.14C>T	p.Pro5Leu	p.P5L	ENST00000221972	NM_021601.3	5	cCa/cTa																																																																														
CIC	0	MSKCC	GRCh37	19	42794461	42794461	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148529529		P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	268	1030	1	ENST00000575354.2:c.1541C>T	p.Pro514Leu	p.P514L	ENST00000575354	NM_015125.3	514	cCc/cTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735443	40735443	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	73	716	0	ENST00000373198.4:c.3430A>G	p.Asn1144Asp	p.N1144D	ENST00000373198	NM_133170.3	1144	Aac/Gac																																																																														
PTPRT	0	MSKCC	GRCh37	20	41101176	41101176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	28	321	0	ENST00000373198.4:c.1180G>A	p.Glu394Lys	p.E394K	ENST00000373198	NM_133170.3	394	Gaa/Aaa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149512374	149512391	+	inframe_deletion	In_Frame_Del	DEL	TGCGGTTGTCTTTGAACC	TGCGGTTGTCTTTGAACC	-			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	73	555	0	ENST00000261799.4:c.1049_1066del	p.Trp350_Thr356delinsSer	p.W350_T356delinsS	ENST00000261799	NM_002609.3	350	tGGTTCAAAGACAACCGCAcc/tcc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121416710	121416711	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0013232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	54	639	0	ENST00000257555.6:c.139_140delinsAA	p.Gly47Lys	p.G47K	ENST00000257555		47	GGg/AAg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780205	9780205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	588	806	1	ENST00000377346.4:c.1375G>A	p.Val459Met	p.V459M	ENST00000377346	NM_005026.3	459	Gtg/Atg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156846327	156846327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	148	760	0	ENST00000524377.1:c.1768G>A	p.Glu590Lys	p.E590K	ENST00000524377	NM_002529.3	590	Gag/Aag																																																																														
TERT	0	MSKCC	GRCh37	5	1294318	1294318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	88	179	1	ENST00000310581.5:c.683C>A	p.Ala228Asp	p.A228D	ENST00000310581	NM_198253.2	228	gCc/gAc																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519586	137519586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	315	780	0	ENST00000367739.4:c.1052G>C	p.Ser351Thr	p.S351T	ENST00000367739	NM_000416.2	351	aGt/aCt																																																																														
MAPK3	0	MSKCC	GRCh37	16	30134514	30134514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	159	322	0	ENST00000263025.4:c.17C>T	p.Ala6Val	p.A6V	ENST00000263025	NM_002746.2	6	gCt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	422	669	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15971397	15971397	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	476	728	0	ENST00000268712.3:c.4552A>G	p.Lys1518Glu	p.K1518E	ENST00000268712	NM_006311.3	1518	Aaa/Gaa																																																																														
SYK	0	MSKCC	GRCh37	9	93637011	93637011	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	150	577	0	ENST00000375746.1:c.1061del	p.Asp354AlafsTer17	p.D354Afs*17	ENST00000375746	NM_001174167.1	354	gAc/gc																																																																														
ESR1	0	MSKCC	GRCh37	6	152419975	152419988	+	frameshift_variant	Frame_Shift_Del	DEL	CCGTGGAGGGGCAT	CCGTGGAGGGGCAT	-			P-0013262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	104	648	0	ENST00000206249.3:c.1671_1684del	p.Ala558AspfsTer88	p.A558Dfs*88	ENST00000206249	NM_000125.3	554	agCCGTGGAGGGGCATcc/agcc																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	112	533	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518208	8518208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	72	525	1	ENST00000356435.5:c.1183G>A	p.Ala395Thr	p.A395T	ENST00000356435		395	Gct/Act																																																																														
TOP1	0	MSKCC	GRCh37	20	39744043	39744043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	79	359	0	ENST00000361337.2:c.1671C>A	p.Asn557Lys	p.N557K	ENST00000361337	NM_003286.2	557	aaC/aaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	366	439	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0013310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	99	504	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0013310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	61	981	2	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974780	21974780	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	57	264	0	ENST00000304494.5:c.47T>A	p.Leu16Gln	p.L16Q	ENST00000304494	NM_000077.4	16	cTg/cAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974780	21974780	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	57	264	0	ENST00000304494.5:c.47T>A	p.Leu16Gln	p.L16Q	ENST00000304494	NM_000077.4	16	cTg/cAg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40748583	40748583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	35	449	0	ENST00000373198.4:c.2933C>T	p.Ala978Val	p.A978V	ENST00000373198	NM_133170.3	978	gCg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	107	274	0				ENST00000310581	NM_198253.2																																																																																
ARID2	0	MSKCC	GRCh37	12	46245843	46245843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	209	566	0	ENST00000334344.6:c.3937C>T	p.Gln1313Ter	p.Q1313*	ENST00000334344	NM_152641.2	1313	Caa/Taa																																																																														
EZH2	0	MSKCC	GRCh37	7	148508727	148508727	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	192	633	0	ENST00000320356.2:c.1937A>T	p.Tyr646Phe	p.Y646F	ENST00000320356	NM_004456.4	646	tAc/tTc																																																																														
NF1	0	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	212	589	1	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943776	9943776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	168	452	2	ENST00000330684.3:c.1165G>A	p.Val389Met	p.V389M	ENST00000330684	NM_001134407.1	389	Gtg/Atg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100043	157100044	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGGAGC			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	14	98	0	ENST00000346085.5:c.992_997dupCAGGAG	p.Ala331_Gly332dup	p.A331_G332dup	ENST00000346085	NM_020732.3	331	gga/ggAGGAGCa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032197	10032197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	199	636	1	ENST00000330684.3:c.626C>T	p.Ser209Phe	p.S209F	ENST00000330684	NM_001134407.1	209	tCc/tTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46245204	46245204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	191	546	1	ENST00000334344.6:c.3298C>T	p.Gln1100Ter	p.Q1100*	ENST00000334344	NM_152641.2	1100	Cag/Tag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8319853	8319853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	263	718	1	ENST00000356435.5:c.5648G>A	p.Arg1883Gln	p.R1883Q	ENST00000356435		1883	cGa/cAa																																																																														
REL	0	MSKCC	GRCh37	2	61118878	61118878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	218	575	0	ENST00000295025.8:c.71G>A	p.Arg24Lys	p.R24K	ENST00000295025	NM_002908.2	24	aGa/aAa																																																																														
REL	0	MSKCC	GRCh37	2	61145574	61145574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	190	595	0	ENST00000295025.8:c.686G>A	p.Gly229Asp	p.G229D	ENST00000295025	NM_002908.2	229	gGc/gAc																																																																														
TP63	0	MSKCC	GRCh37	3	189526134	189526134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	194	608	0	ENST00000264731.3:c.398C>T	p.Pro133Leu	p.P133L	ENST00000264731	NM_003722.4	133	cCc/cTc																																																																														
PAX5	0	MSKCC	GRCh37	9	36923460	36923460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	185	580	0	ENST00000358127.4:c.802G>A	p.Ala268Thr	p.A268T	ENST00000358127	NM_001280556.1	268	Gcc/Acc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139409116	139409116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	218	771	0	ENST00000277541.6:c.2053A>G	p.Asn685Asp	p.N685D	ENST00000277541	NM_017617.3	685	Aac/Gac																																																																														
CCND2	0	MSKCC	GRCh37	12	4398035	4398035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	251	769	0	ENST00000261254.3:c.599C>T	p.Ser200Leu	p.S200L	ENST00000261254	NM_001759.3	200	tCg/tTg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18719882	18719882	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	147	514	0	ENST00000266497.5:c.3780-1G>A		p.X1260_splice	ENST00000266497		1260																																																																															
KRAS	0	MSKCC	GRCh37	12	25380303	25380303	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	183	558	0	ENST00000256078.4:c.155T>G	p.Leu52Arg	p.L52R	ENST00000256078	NM_033360.2	52	cTc/cGc																																																																														
GLI1	0	MSKCC	GRCh37	12	57858597	57858597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1263	318	940	0	ENST00000228682.2:c.335C>T	p.Ser112Leu	p.S112L	ENST00000228682	NM_005269.2	112	tCg/tTg																																																																														
TBX3	0	MSKCC	GRCh37	12	115109819	115109819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	170	455	0	ENST00000257566.3:c.2059G>A	p.Asp687Asn	p.D687N	ENST00000257566	NM_016569.3	687	Gac/Aac																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420352	88420352	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	100	291	0	ENST00000360948.2:c.2335-1G>A		p.X779_splice	ENST00000360948	NM_001012338.2	779																																																																															
GRIN2A	0	MSKCC	GRCh37	16	9857638	9857638	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	170	571	0	ENST00000330684.3:c.3763C>T	p.Gln1255Ter	p.Q1255*	ENST00000330684	NM_001134407.1	1255	Cag/Tag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858706	9858706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	274	738	1	ENST00000330684.3:c.2695C>T	p.Arg899Trp	p.R899W	ENST00000330684	NM_001134407.1	899	Cgg/Tgg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862887	9862887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	254	646	1	ENST00000330684.3:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000330684	NM_001134407.1	806	Gag/Aag																																																																														
NF1	0	MSKCC	GRCh37	17	29508779	29508779	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	158	605	0	ENST00000358273.4:c.706C>T	p.Gln236Ter	p.Q236*	ENST00000358273	NM_001042492.2	236	Cag/Tag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5274352	5274352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	152	419	1	ENST00000357368.4:c.95C>T	p.Pro32Leu	p.P32L	ENST00000357368	NM_002850.3	32	cCc/cTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291600	15291600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	260	694	1	ENST00000263388.2:c.3034G>A	p.Gly1012Arg	p.G1012R	ENST00000263388	NM_000435.2	1012	Ggg/Agg																																																																														
SRC	0	MSKCC	GRCh37	20	36012653	36012653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	104	327	0	ENST00000358208.4:c.97C>T	p.Pro33Ser	p.P33S	ENST00000358208		33	Ccc/Tcc																																																																														
NF2	0	MSKCC	GRCh37	22	30050707	30050707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	170	483	0	ENST00000338641.4:c.509C>T	p.Pro170Leu	p.P170L	ENST00000338641	NM_000268.3	170	cCa/cTa																																																																														
MLL3	0	MSKCC	GRCh37	7	151879307	151879307	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	173	495	0	ENST00000262189.6:c.5638del	p.Gln1880LysfsTer59	p.Q1880Kfs*59	ENST00000262189	NM_170606.2	1880	Caa/aa																																																																														
SOX9	0	MSKCC	GRCh37	17	70117544	70117545	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	142	532	0	ENST00000245479.2:c.12_13delinsAA	p.Asp5Asn	p.D5N	ENST00000245479	NM_000346.3	4	ctGGac/ctAAac																																																																														
TSC1	0	MSKCC	GRCh37	9	135781428	135781429	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0013356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	316	1014	0	ENST00000298552.3:c.1536_1537delinsTT	p.Pro513Ser	p.P513S	ENST00000298552	NM_001162426.1	512	ctCCca/ctTTca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	354	673	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MLL2	0	MSKCC	GRCh37	12	49440430	49440431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	144	558	0	ENST00000301067.7:c.4379dupC	p.Leu1461ThrfsTer30	p.L1461Tfs*30	ENST00000301067	NM_003482.3	1460	cca/ccCa																																																																														
EGFR	0	MSKCC	GRCh37	7	55214319	55214319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	169	576	2	ENST00000275493.2:c.445C>T	p.Arg149Trp	p.R149W	ENST00000275493	NM_005228.3	149	Cgg/Tgg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252838	36252862	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGACAGATAACGTACCTCTTCCAC	TTGACAGATAACGTACCTCTTCCAC	-			P-0013373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	98	432	0	ENST00000300305.3:c.500_508+16del		p.X167_splice	ENST00000300305		167																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1281	127	873	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PARK2	0	MSKCC	GRCh37	6	162475127	162475127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1198	67	804	0	ENST00000366898.1:c.614G>C	p.Ser205Thr	p.S205T	ENST00000366898	NM_004562.2	205	aGt/aCt																																																																														
ABL1	0	MSKCC	GRCh37	9	133730086	133730189	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTAGGAATTTGGAGATTTTTAGTAGTTACACAAGAATCAATGAAAAAGAACGAAGCTGGTTTCCAAAGCTGATATGTCTGATTTGGTTCCTTTCTTCTCAGGT	TTTAGGAATTTGGAGATTTTTAGTAGTTACACAAGAATCAATGAAAAAGAACGAAGCTGGTTTCCAAAGCTGATATGTCTGATTTGGTTCCTTTCTTCTCAGGT	-			P-0013386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	20	71	0	ENST00000318560.5:c.254-102_255delTTTAGGAATTTGGAGATTTTTAGTAGTTACACAAGAATCAATGAAAAAGAACGAAGCTGGTTTCCAAAGCTGATATGTCTGATTTGGTTCCTTTCTTCTCAGGT		p.X85_splice	ENST00000318560	NM_005157.4	85																																																																															
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	202	730	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
BCOR	0	MSKCC	GRCh37	X	39933151	39933151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	189	783	1	ENST00000378444.4:c.1448C>T	p.Pro483Leu	p.P483L	ENST00000378444	NM_001123385.1	483	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0013396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	376	477	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120496249	120496249	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	194	752	0	ENST00000256646.2:c.2282del	p.Cys761SerfsTer16	p.C761Sfs*16	ENST00000256646	NM_024408.3	761	tGc/tc																																																																														
MEN1	0	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	220	784	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																																																														
BCL6	0	MSKCC	GRCh37	3	187446884	187446884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	175	860	0	ENST00000232014.4:c.1309G>T	p.Asp437Tyr	p.D437Y	ENST00000232014	NM_001130845.1	437	Gac/Tac																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652001	36652001	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	272	766	1	ENST00000244741.5:c.123C>A	p.Cys41Ter	p.C41*	ENST00000244741	NM_000389.4	41	tgC/tgA																																																																														
BRAF	0	MSKCC	GRCh37	7	140453139	140453139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	221	643	1	ENST00000288602.6:c.1796C>A	p.Thr599Lys	p.T599K	ENST00000288602	NM_004333.4	599	aCa/aAa																																																																														
TSC2	0	MSKCC	GRCh37	16	2113052	2113052	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	257	996	6	ENST00000219476.3:c.1441G>T	p.Glu481Ter	p.E481*	ENST00000219476	NM_000548.3	481	Gag/Tag																																																																														
GNAS	0	MSKCC	GRCh37	20	57478626	57478626	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	332	731	2	ENST00000371085.3:c.298A>G	p.Lys100Glu	p.K100E	ENST00000371085	NM_000516.4	100	Aaa/Gaa																																																																														
ATRX	0	MSKCC	GRCh37	X	76939274	76939274	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	187	494	0	ENST00000373344.5:c.1474G>T	p.Glu492Ter	p.E492*	ENST00000373344	NM_000489.3	492	Gaa/Taa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	220	662	2	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	690	836	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8633320	8633320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	667	853	3	ENST00000356435.5:c.349C>T	p.Arg117Trp	p.R117W	ENST00000356435		117	Cgg/Tgg																																																																														
DDR2	0	MSKCC	GRCh37	1	162745623	162745623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	152	512	0	ENST00000367921.3:c.2038C>T	p.Arg680Cys	p.R680C	ENST00000367921	NM_006182.2	680	Cgc/Tgc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15971252	15971252	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs118021690		P-0013401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	384	472	0	ENST00000268712.3:c.4697C>T	p.Thr1566Met	p.T1566M	ENST00000268712	NM_006311.3	1566	aCg/aTg																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	113	595	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121242	29121242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	206	1037	0	ENST00000328354.6:c.433C>T	p.Arg145Trp	p.R145W	ENST00000328354	NM_007194.3	145	Cgg/Tgg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40911143	40911143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	467	960	1	ENST00000373198.4:c.2162G>A	p.Arg721His	p.R721H	ENST00000373198	NM_133170.3	721	cGt/cAt																																																																														
PMS1	0	MSKCC	GRCh37	2	190718767	190718767	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	114	533	0	ENST00000441310.2:c.925A>C	p.Asn309His	p.N309H	ENST00000441310	NM_000534.4	309	Aat/Cat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8492979	8492979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	30	444	0	ENST00000356435.5:c.2350G>C	p.Asp784His	p.D784H	ENST00000356435		784	Gac/Cac																																																																														
ATM	0	MSKCC	GRCh37	11	108216469	108216469	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	316	631	0	ENST00000278616.4:c.8419-1G>C		p.X2807_splice	ENST00000278616	NM_000051.3	2807																																																																															
MGA	0	MSKCC	GRCh37	15	41989116	41989116	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	324	1289	0	ENST00000219905.7:c.1908A>C	p.Leu636Phe	p.L636F	ENST00000219905	NM_001164273.1	636	ttA/ttC																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351594	89351594	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	444	1408	1	ENST00000301030.4:c.1356T>A	p.Asn452Lys	p.N452K	ENST00000301030	NM_001256183.1	452	aaT/aaA																																																																														
BRIP1	0	MSKCC	GRCh37	17	59761012	59761012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	194	848	2	ENST00000259008.2:c.3395T>C	p.Phe1132Ser	p.F1132S	ENST00000259008	NM_032043.2	1132	tTt/tCt																																																																														
TP53	0	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	899	658	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg																																																																														
PTEN	0	MSKCC	GRCh37	10	89653829	89653829	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	458	453	1	ENST00000371953.3:c.127G>T	p.Glu43Ter	p.E43*	ENST00000371953	NM_000314.4	43	Gaa/Taa																																																																														
RB1	0	MSKCC	GRCh37	13	49033823	49033823	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	355	524	1	ENST00000267163.4:c.1961-1G>T		p.X654_splice	ENST00000267163	NM_000321.2	654																																																																															
TERT	0	MSKCC	GRCh37	5	1294058	1294058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	274	520	0	ENST00000310581.5:c.943C>G	p.Arg315Gly	p.R315G	ENST00000310581	NM_198253.2	315	Cgt/Ggt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10250903	10250903	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	280	387	0	ENST00000340748.4:c.3577A>G	p.Ile1193Val	p.I1193V	ENST00000340748		1193	Atc/Gtc																																																																														
ATRX	0	MSKCC	GRCh37	X	76855288	76855288	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	298	606	0	ENST00000373344.5:c.5699G>T	p.Gly1900Val	p.G1900V	ENST00000373344	NM_000489.3	1900	gGt/gTt																																																																														
STAG2	0	MSKCC	GRCh37	X	123171431	123171431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	406	663	0	ENST00000218089.9:c.343C>G	p.Leu115Val	p.L115V	ENST00000218089	NM_001042749.1	115	Ctt/Gtt																																																																														
STAG2	0	MSKCC	GRCh37	X	123190035	123190035	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	544	673	1	ENST00000218089.9:c.1254T>A	p.Tyr418Ter	p.Y418*	ENST00000218089	NM_001042749.1	418	taT/taA																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807379	3807379	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0013414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	596	311	0	ENST00000262367.5:c.3610-2A>T		p.X1204_splice	ENST00000262367	NM_004380.2	1204																																																																															
CASP8	0	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	467	471	0	ENST00000358485.4:c.380G>C	p.Arg127Pro	p.R127P	ENST00000358485	NM_001080125.1	127	cGa/cCa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251912	153251912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	620	731	0	ENST00000281708.4:c.1094G>C	p.Trp365Ser	p.W365S	ENST00000281708	NM_033632.3	365	tGg/tCg																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2494624	2494624	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	84	740	0	ENST00000355716.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000355716	NM_003820.2	255	aTt/aCt																																																																														
RB1	0	MSKCC	GRCh37	13	48941741	48941741	+	splice_donor_variant	Splice_Site	SNP	T	T	A	rs41287453		P-0013434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	134	325	0	ENST00000267163.4:c.1049+2T>A		p.X350_splice	ENST00000267163	NM_000321.2	350																																																																															
TP53	0	MSKCC	GRCh37	17	7577530	7577531	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	259	659	0	ENST00000269305.4:c.750dup	p.Ile251HisfsTer13	p.I251Hfs*13	ENST00000269305	NM_001126112.2	250	-/C																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	188	586	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	398	572	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738300	145738300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	75	457	0	ENST00000428558.2:c.2685G>T	p.Arg895Ser	p.R895S	ENST00000428558	NM_004260.3	895	agG/agT																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226596	2226596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	73	499	0	ENST00000398665.3:c.4076A>T	p.Lys1359Met	p.K1359M	ENST00000398665	NM_032482.2	1359	aAg/aTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10251535	10251535	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	79	699	0	ENST00000340748.4:c.3397G>T	p.Glu1133Ter	p.E1133*	ENST00000340748		1133	Gag/Tag																																																																														
RBM10	0	MSKCC	GRCh37	X	47035946	47035946	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	169	502	0	ENST00000329236.7:c.396del	p.Lys133SerfsTer56	p.K133Sfs*56	ENST00000329236	NM_001204466.1	131	gaC/ga																																																																														
RB1	0	MSKCC	GRCh37	13	48916770	48916770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	124	408	0	ENST00000267163.4:c.301del	p.Ile101SerfsTer10	p.I101Sfs*10	ENST00000267163	NM_000321.2	100	ggA/gg																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	107	643	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
STK11	0	MSKCC	GRCh37	19	1220622	1220622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	130	760	2	ENST00000326873.7:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000326873	NM_000455.4	214	Cag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	131	863	0	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89462324	89462324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	121	560	2	ENST00000336596.2:c.1796C>T	p.Pro599Leu	p.P599L	ENST00000336596	NM_005233.5	599	cCa/cTa																																																																														
ATR	0	MSKCC	GRCh37	3	142183956	142183956	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	116	663	0	ENST00000350721.4:c.7024A>T	p.Asn2342Tyr	p.N2342Y	ENST00000350721	NM_001184.3	2342	Aat/Tat																																																																														
FLT4	0	MSKCC	GRCh37	5	180040095	180040095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	116	850	0	ENST00000261937.6:c.3347C>G	p.Pro1116Arg	p.P1116R	ENST00000261937	NM_182925.4	1116	cCt/cGt																																																																														
FLT4	0	MSKCC	GRCh37	5	180056426	180056426	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	67	394	0	ENST00000261937.6:c.818C>A	p.Ala273Glu	p.A273E	ENST00000261937	NM_182925.4	273	gCa/gAa																																																																														
TBX3	0	MSKCC	GRCh37	12	115120863	115120863	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	54	415	0	ENST00000257566.3:c.143C>A	p.Pro48His	p.P48H	ENST00000257566	NM_016569.3	48	cCc/cAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76940083	76940083	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	103	265	0	ENST00000373344.5:c.665G>T	p.Trp222Leu	p.W222L	ENST00000373344	NM_000489.3	222	tGg/tTg																																																																														
BTK	0	MSKCC	GRCh37	X	100615579	100615579	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	181	499	0	ENST00000308731.7:c.753G>A	p.Trp251Ter	p.W251*	ENST00000308731	NM_000061.2	251	tgG/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	52	352	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	92	646	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	202	575	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
AXIN1	0	MSKCC	GRCh37	16	396815	396815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	118	701	0	ENST00000262320.3:c.211G>T	p.Glu71Ter	p.E71*	ENST00000262320	NM_003502.3	71	Gag/Tag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779453	3779453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	83	729	0	ENST00000262367.5:c.5595G>T	p.Met1865Ile	p.M1865I	ENST00000262367	NM_004380.2	1865	atG/atT																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652042	36652042	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	129	729	0	ENST00000244741.5:c.165del	p.Glu56ArgfsTer92	p.E56Rfs*92	ENST00000244741	NM_000389.4	55	aCc/ac																																																																														
TSC2	0	MSKCC	GRCh37	16	2110709	2110719	+	frameshift_variant	Frame_Shift_Del	DEL	CGTCCTGTCCA	CGTCCTGTCCA	T			P-0013464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	131	779	0	ENST00000219476.3:c.1014_1024delinsT	p.Val339SerfsTer21	p.V339Sfs*21	ENST00000219476	NM_000548.3	338	atCGTCCTGTCCAtc/atTtc																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1210	222	782	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	250	808	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593517	48593517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	178	505	0	ENST00000342988.3:c.1268G>T	p.Gly423Val	p.G423V	ENST00000342988	NM_005359.5	423	gGa/gTa																																																																														
AXL	0	MSKCC	GRCh37	19	41727941	41727941	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	174	719	0	ENST00000301178.4:c.566A>T	p.Gln189Leu	p.Q189L	ENST00000301178	NM_021913.4	189	cAg/cTg																																																																														
FAM175A	0	MSKCC	GRCh37	4	84390255	84390287	+	inframe_deletion	In_Frame_Del	DEL	GTTCAGACATGCCCAGATTGGCAACCACTAAAG	GTTCAGACATGCCCAGATTGGCAACCACTAAAG	-			P-0013487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	76	598	0	ENST00000321945.7:c.494_526del	p.Pro165_Glu175del	p.P165_E175del	ENST00000321945	NM_139076.2	165	cCTTTAGTGGTTGCCAATCTGGGCATGTCTGAACaa/caa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098807	178098807	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	178	799	0	ENST00000397062.3:c.238A>G	p.Thr80Ala	p.T80A	ENST00000397062	NM_006164.4	80	Aca/Gca																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0013497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	84	342	0	ENST00000274335.5:c.1392_1403delTAGATTATATGA	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67462907	67462907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	62	627	2	ENST00000327367.4:c.623C>T	p.Ser208Phe	p.S208F	ENST00000327367	NM_005902.3	208	tCc/tTc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15974833	15974833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	101	664	1	ENST00000268712.3:c.4042G>A	p.Gly1348Arg	p.G1348R	ENST00000268712	NM_006311.3	1348	Ggg/Agg																																																																														
CIC	0	MSKCC	GRCh37	19	42795734	42795734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	114	695	1	ENST00000575354.2:c.2723C>T	p.Ala908Val	p.A908V	ENST00000575354	NM_015125.3	908	gCc/gTc																																																																														
GATA1	0	MSKCC	GRCh37	X	48650506	48650506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	66	835	0	ENST00000376670.3:c.476C>G	p.Pro159Arg	p.P159R	ENST00000376670	NM_002049.3	159	cCc/cGc																																																																														
APC	0	MSKCC	GRCh37	5	112175939	112175939	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	157	447	1	ENST00000257430.4:c.4648G>T	p.Glu1550Ter	p.E1550*	ENST00000257430	NM_000038.5	1550	Gag/Tag																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	114	353	0	ENST00000274335.5:c.1392_1403delTAGATTATATGA	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa																																																																														
JAK1	0	MSKCC	GRCh37	1	65325803	65325803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	169	490	1	ENST00000342505.4:c.1319G>A	p.Cys440Tyr	p.C440Y	ENST00000342505	NM_002227.2	440	tGt/tAt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267422	198267422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	239	589	0	ENST00000335508.6:c.1935G>T	p.Leu645Phe	p.L645F	ENST00000335508	NM_012433.2	645	ttG/ttT																																																																														
CD276	0	MSKCC	GRCh37	15	74003488	74003488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	339	824	1	ENST00000318443.5:c.1559T>C	p.Leu520Pro	p.L520P	ENST00000318443	NM_001024736.1	520	cTg/cCg																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18271893	18271893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	177	448	4	ENST00000222254.8:c.496G>T	p.Asp166Tyr	p.D166Y	ENST00000222254	NM_005027.3	166	Gac/Tac																																																																														
KDM6A	0	MSKCC	GRCh37	X	44923064	44923064	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	156	236	1	ENST00000377967.4:c.1923+2T>A		p.X641_splice	ENST00000377967	NM_021140.2	641																																																																															
TP53	0	MSKCC	GRCh37	17	7578249	7578444	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	ATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAG	ATTTCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAG	-			P-0013505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	273	701	0	ENST00000269305.4:c.486_600del		p.X162_splice	ENST00000269305	NM_001126112.2	162	atCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGATGGTGAGCAGCTGGGGCTGGAGAGACGACAGGGCTGGTTGCCCAGGGTCCCCAGGCCTCTGATTCCTCACTGATTGCTCTTAGGTCTGGCCCCTCCTCAGCATCTTATCCGAGTGGAAGGAAAT/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	89	546	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	89	807	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857895	9857895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	128	635	0	ENST00000330684.3:c.3506G>A	p.Arg1169Gln	p.R1169Q	ENST00000330684	NM_001134407.1	1169	cGg/cAg																																																																														
STK11	0	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	147	584	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176519676	176519676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	81	453	2	ENST00000292408.4:c.948G>T	p.Glu316Asp	p.E316D	ENST00000292408	NM_213647.1	316	gaG/gaT																																																																														
HGF	0	MSKCC	GRCh37	7	81381533	81381533	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	116	718	0	ENST00000222390.5:c.528C>A	p.Tyr176Ter	p.Y176*	ENST00000222390	NM_000601.4	176	taC/taA																																																																														
ATM	0	MSKCC	GRCh37	11	108202233	108202233	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	73	462	0	ENST00000278616.4:c.7578A>C	p.Arg2526Ser	p.R2526S	ENST00000278616	NM_000051.3	2526	agA/agC																																																																														
MDM2	0	MSKCC	GRCh37	12	69203005	69203005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1442	134	553	0	ENST00000462284.1:c.32A>G	p.Asn11Ser	p.N11S	ENST00000462284	NM_002392.5	11	aAc/aGc																																																																														
CDK8	0	MSKCC	GRCh37	13	26828827	26828827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	87	557	0	ENST00000381527.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000381527	NM_001260.1	17	Gag/Aag																																																																														
JAK3	0	MSKCC	GRCh37	19	17941380	17941380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	134	519	0	ENST00000458235.1:c.3028G>A	p.Val1010Ile	p.V1010I	ENST00000458235	NM_000215.3	1010	Gtc/Atc																																																																														
FANCC	0	MSKCC	GRCh37	9	98011546	98011546	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	74	549	0	ENST00000289081.3:c.28del	p.Cys10ValfsTer36	p.C10Vfs*36	ENST00000289081	NM_000136.2	10	Tgt/gt																																																																														
KDM5A	0	MSKCC	GRCh37	12	461404	461405	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0013511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	118	578	0	ENST00000399788.2:c.1114_1115dup	p.Asn372LysfsTer19	p.N372Kfs*19	ENST00000399788	NM_001042603.1	372	aat/aaAAt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	102	390	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	49	351	0				ENST00000310581	NM_198253.2																																																																																
PARK2	0	MSKCC	GRCh37	6	161781201	161781201	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55830907		P-0013525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	75	680	3	ENST00000366898.1:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000366898	NM_004562.2	402	Cgt/Tgt																																																																														
TP63	0	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	51	493	1	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt																																																																														
SPEN	0	MSKCC	GRCh37	1	16258815	16258815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	66	534	0	ENST00000375759.3:c.6080C>T	p.Ser2027Phe	p.S2027F	ENST00000375759	NM_015001.2	2027	tCc/tTc																																																																														
RET	0	MSKCC	GRCh37	10	43597835	43597835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1362	94	915	0	ENST00000355710.3:c.383C>T	p.Ser128Leu	p.S128L	ENST00000355710	NM_020975.4	128	tCa/tTa																																																																														
KDM5A	0	MSKCC	GRCh37	12	419070	419071	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	85	637	0	ENST00000399788.2:c.3276dup	p.Val1093SerfsTer20	p.V1093Sfs*20	ENST00000399788	NM_001042603.1	1092	-/A																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804343	46804343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1399	119	729	0	ENST00000290295.7:c.664C>T	p.Pro222Ser	p.P222S	ENST00000290295	NM_006361.5	222	Ccg/Tcg																																																																														
ALK	0	MSKCC	GRCh37	2	29416199	29416199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1155	86	629	0	ENST00000389048.3:c.4754G>A	p.Gly1585Asp	p.G1585D	ENST00000389048	NM_004304.4	1585	gGc/gAc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248538	212248538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1275	120	811	1	ENST00000342788.4:c.3729G>A	p.Trp1243Ter	p.W1243*	ENST00000342788	NM_005235.2	1243	tgG/tgA																																																																														
MST1R	0	MSKCC	GRCh37	3	49928736	49928736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1226	112	774	0	ENST00000296474.3:c.3538C>T	p.Pro1180Ser	p.P1180S	ENST00000296474	NM_002447.2	1180	Ccc/Tcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	137	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	84	677	1	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	84	677	1	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579408	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTG	-			P-0013528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	47	533	0	ENST00000269305.4:c.257_279delCACCAGCCCCCTCCTGGCCCCTG	p.Ala86ValfsTer55	p.A86Vfs*55	ENST00000269305	NM_001126112.2	86	gCACCAGCCCCCTCCTGGCCCCTG/g																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089710	27089711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	49	438	0	ENST00000324856.7:c.2667dup	p.Met890HisfsTer46	p.M890Hfs*46	ENST00000324856	NM_006015.4	889	ggc/ggCc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44966658	44966658	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	81	361	0	ENST00000377967.4:c.3882T>G	p.Tyr1294Ter	p.Y1294*	ENST00000377967	NM_021140.2	1294	taT/taG																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	162	543	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0013551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	138	592	1	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213873	66213873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	184	884	2	ENST00000273854.3:c.2557C>T	p.Arg853Ter	p.R853*	ENST00000273854	NM_004439.5	853	Cga/Tga																																																																														
MGA	0	MSKCC	GRCh37	15	41961418	41961418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	179	1314	5	ENST00000219905.7:c.326G>A	p.Arg109His	p.R109H	ENST00000219905	NM_001164273.1	109	cGt/cAt																																																																														
RB1	0	MSKCC	GRCh37	13	48947603	48947603	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0013558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	113	415	0	ENST00000267163.4:c.1190C>G	p.Ser397Ter	p.S397*	ENST00000267163	NM_000321.2	397	tCa/tGa																																																																														
POLE	0	MSKCC	GRCh37	12	133252084	133252084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	39	664	1	ENST00000320574.5:c.1126G>T	p.Ala376Ser	p.A376S	ENST00000320574	NM_006231.2	376	Gca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7579317	7579317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	98	448	1	ENST00000269305.4:c.370delT	p.Cys124AlafsTer46	p.C124Afs*46	ENST00000269305	NM_001126112.2	124	Tgc/gc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87342675	87342675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	32	617	0	ENST00000277120.3:c.960C>A	p.Asn320Lys	p.N320K	ENST00000277120		320	aaC/aaA																																																																														
AR	0	MSKCC	GRCh37	X	66931313	66931313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	29	483	0	ENST00000374690.3:c.1955C>T	p.Pro652Leu	p.P652L	ENST00000374690	NM_000044.3	652	cCc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	52	793	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	63	868	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	44	407	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	44	407	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591933	48591933	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	60	778	0	ENST00000342988.3:c.1096C>T	p.Gln366Ter	p.Q366*	ENST00000342988	NM_005359.5	366	Caa/Taa																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	44	407	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967847	93967847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	68	1565	0	ENST00000369303.4:c.2080G>A	p.Val694Ile	p.V694I	ENST00000369303	NM_004440.3	694	Gtt/Att																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	189	540	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522416	176522416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	169	624	0	ENST00000292408.4:c.1605C>A	p.Asn535Lys	p.N535K	ENST00000292408	NM_213647.1	535	aaC/aaA																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729159	66729159	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	170	694	0	ENST00000307102.5:c.367T>C	p.Ser123Pro	p.S123P	ENST00000307102	NM_002755.3	123	Tct/Cct																																																																														
CREBBP	0	MSKCC	GRCh37	16	3794958	3794958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	61	558	1	ENST00000262367.5:c.3919G>A	p.Val1307Met	p.V1307M	ENST00000262367	NM_004380.2	1307	Gtg/Atg																																																																														
CDH1	0	MSKCC	GRCh37	16	68772261	68772261	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	84	775	0	ENST00000261769.5:c.110A>G	p.Tyr37Cys	p.Y37C	ENST00000261769	NM_004360.3	37	tAc/tGc																																																																														
CDH1	0	MSKCC	GRCh37	16	68857487	68857487	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	131	471	0	ENST00000261769.5:c.2123del	p.Pro708LeufsTer14	p.P708Lfs*14	ENST00000261769	NM_004360.3	708	Cct/ct																																																																														
XPO1	0	MSKCC	GRCh37	2	61715319	61715319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	96	769	1	ENST00000401558.2:c.2294G>A	p.Arg765Gln	p.R765Q	ENST00000401558	NM_003400.3	765	cGa/cAa																																																																														
RAD21	0	MSKCC	GRCh37	8	117869710	117869710	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	45	861	0	ENST00000297338.2:c.484G>A	p.Asp162Asn	p.D162N	ENST00000297338	NM_006265.2	162	Gat/Aat																																																																														
BTK	0	MSKCC	GRCh37	X	100611858	100611858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	93	1143	0	ENST00000308731.7:c.1263del	p.Trp421Ter	p.W421*	ENST00000308731	NM_000061.2	421	tgG/tg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	30	611	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	35	795	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																														
CBFB	0	MSKCC	GRCh37	16	67100640	67100640	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	57	872	0	ENST00000412916.2:c.338G>A	p.Trp113Ter	p.W113*	ENST00000412916		113	tGg/tAg																																																																														
SMO	0	MSKCC	GRCh37	7	128850332	128850332	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	27	663	0	ENST00000249373.3:c.1595T>C	p.Met532Thr	p.M532T	ENST00000249373	NM_005631.4	532	aTg/aCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	180	474	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	65	272	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	51	588	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
FUBP1	0	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	115	678	0	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346688	89346688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	106	664	2	ENST00000301030.4:c.6262G>A	p.Ala2088Thr	p.A2088T	ENST00000301030	NM_001256183.1	2088	Gct/Act																																																																														
IRS1	0	MSKCC	GRCh37	2	227662938	227662938	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	84	723	0	ENST00000305123.5:c.517C>G	p.Leu173Val	p.L173V	ENST00000305123	NM_005544.2	173	Ctg/Gtg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41420092	41420092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	121	370	0	ENST00000373198.4:c.229G>A	p.Val77Met	p.V77M	ENST00000373198	NM_133170.3	77	Gtg/Atg																																																																														
APC	0	MSKCC	GRCh37	5	112175511	112176209	+	inframe_deletion	In_Frame_Del	DEL	GTGAACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGGAAACCAAGTCAGCTGCCTGTGTACAAACTTCTACCATCACAAAACAGGTTGCAACCCCAAAAGCATGTTAGTTTTACACCGGGGGATGATATGCCAC	GTGAACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGGAAACCAAGTCAGCTGCCTGTGTACAAACTTCTACCATCACAAAACAGGTTGCAACCCCAAAAGCATGTTAGTTTTACACCGGGGGATGATATGCCAC	-			P-0013594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	248	503	0	ENST00000257430.4:c.4221_4919del	p.Ser1407_Pro1639del	p.S1407_P1639del	ENST00000257430	NM_000038.5	1407	aGTGAACCATGCAGTGGAATGGTAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGAATCAGAGCAGCCTAAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTAGAAGAATGTATTATTTCTGCCATGCCAACAAAGTCATCACGTAAAGCAAAAAAGCCAGCCCAGACTGCTTCAAAATTACCTCCACCTGTGGCAAGGAAACCAAGTCAGCTGCCTGTGTACAAACTTCTACCATCACAAAACAGGTTGCAACCCCAAAAGCATGTTAGTTTTACACCGGGGGATGATATGCCACgg/agg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	28	194	1				ENST00000310581	NM_198253.2																																																																																
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	380	674	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
ROS1	0	MSKCC	GRCh37	6	117658469	117658469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	40	378	0	ENST00000368508.3:c.5114C>T	p.Ser1705Leu	p.S1705L	ENST00000368508	NM_002944.2	1705	tCa/tTa																																																																														
MET	0	MSKCC	GRCh37	7	116397780	116397780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	531	868	1	ENST00000397752.3:c.2054G>A	p.Gly685Glu	p.G685E	ENST00000397752	NM_000245.2	685	gGg/gAg																																																																														
TP63	0	MSKCC	GRCh37	3	189526226	189526226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	139	854	2	ENST00000264731.3:c.490G>A	p.Ala164Thr	p.A164T	ENST00000264731	NM_003722.4	164	Gcc/Acc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18793456	18793456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	70	738	0	ENST00000266497.5:c.4153C>T	p.Pro1385Ser	p.P1385S	ENST00000266497		1385	Cca/Tca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139393422	139393422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	105	606	1	ENST00000277541.6:c.6109G>T	p.Ala2037Ser	p.A2037S	ENST00000277541	NM_017617.3	2037	Gcc/Tcc																																																																														
BCL10	0	MSKCC	GRCh37	1	85733446	85733446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1285	125	1192	3	ENST00000370580.1:c.566C>T	p.Ser189Leu	p.S189L	ENST00000370580	NM_003921.4	189	tCa/tTa																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138856	64138857	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	60	443	1	ENST00000334205.4:c.2223_2224delinsTT	p.Arg742Cys	p.R742C	ENST00000334205	NM_003942.2	741	tcCCgc/tcTTgc																																																																														
ATM	0	MSKCC	GRCh37	11	108235849	108235849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	67	608	1	ENST00000278616.4:c.8891C>T	p.Pro2964Leu	p.P2964L	ENST00000278616	NM_000051.3	2964	cCt/cTt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112067	115112067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	78	621	0	ENST00000257566.3:c.1673C>T	p.Ser558Phe	p.S558F	ENST00000257566	NM_016569.3	558	tCc/tTc																																																																														
FLT1	0	MSKCC	GRCh37	13	29041222	29041223	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	54	744	0	ENST00000282397.4:c.205_206inv	p.Lys69Leu	p.K69L	ENST00000282397	NM_002019.4	69	AAg/TTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578401	7578401	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147002414		P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	70	544	0	ENST00000269305.4:c.529C>T	p.Pro177Ser	p.P177S	ENST00000269305	NM_001126112.2	177	Ccc/Tcc																																																																														
MYCN	0	MSKCC	GRCh37	2	16086016	16086016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	114	568	2	ENST00000281043.3:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000281043	NM_005378.4	398	Cgg/Tgg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36206742	36206742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	52	493	1	ENST00000300305.3:c.770C>T	p.Thr257Ile	p.T257I	ENST00000300305		257	aCt/aTt																																																																														
ATR	0	MSKCC	GRCh37	3	142281333	142281333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	35	527	0	ENST00000350721.4:c.911C>T	p.Pro304Leu	p.P304L	ENST00000350721	NM_001184.3	304	cCc/cTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93955044	93955044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	83	689	0	ENST00000369303.4:c.2854C>T	p.Leu952Phe	p.L952F	ENST00000369303	NM_004440.3	952	Ctt/Ttt																																																																														
SOX17	0	MSKCC	GRCh37	8	55372475	55372475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	82	812	1	ENST00000297316.4:c.1165C>T	p.Pro389Ser	p.P389S	ENST00000297316	NM_022454.3	389	Ccc/Tcc																																																																														
FANCA	0	MSKCC	GRCh37	16	89805087	89805088	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0013622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	15	515	0	ENST00000389301.3:c.4289_4290del	p.Pro1430ArgfsTer15	p.P1430Rfs*15	ENST00000389301	NM_000135.2	1430	cCA/c																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	16	539	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
NF1	0	MSKCC	GRCh37	17	29654769	29654769	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	18	527	1	ENST00000358273.4:c.5521C>T	p.Gln1841Ter	p.Q1841*	ENST00000358273	NM_001042492.2	1841	Caa/Taa																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2494319	2494319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	14	525	0	ENST00000355716.4:c.710T>C	p.Val237Ala	p.V237A	ENST00000355716	NM_003820.2	237	gTg/gCg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856647	111856647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	13	323	0	ENST00000341259.2:c.698C>T	p.Pro233Leu	p.P233L	ENST00000341259	NM_005475.2	233	cCc/cTc																																																																														
BLM	0	MSKCC	GRCh37	15	91354528	91354528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	14	477	0	ENST00000355112.3:c.3968C>T	p.Ser1323Phe	p.S1323F	ENST00000355112	NM_000057.2	1323	tCc/tTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9984926	9984926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	12	916	0	ENST00000330684.3:c.1039G>A	p.Asp347Asn	p.D347N	ENST00000330684	NM_001134407.1	347	Gac/Aac																																																																														
BRCA1	0	MSKCC	GRCh37	17	41267751	41267751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	36	732	0	ENST00000357654.3:c.126A>G	p.Ile42Met	p.I42M	ENST00000357654	NM_007294.3	42	atA/atG																																																																														
NSD1	0	MSKCC	GRCh37	5	176665413	176665413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	13	578	0	ENST00000439151.2:c.4097C>T	p.Ala1366Val	p.A1366V	ENST00000439151	NM_022455.4	1366	gCt/gTt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32185011	32185011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	10	701	2	ENST00000375023.3:c.1657G>A	p.Asp553Asn	p.D553N	ENST00000375023	NM_004557.3	553	Gat/Aat																																																																														
BCOR	0	MSKCC	GRCh37	X	39931964	39931964	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	12	363	0	ENST00000378444.4:c.2635A>C	p.Ser879Arg	p.S879R	ENST00000378444	NM_001123385.1	879	Agc/Cgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0013675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	176	397	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
RBM10	0	MSKCC	GRCh37	X	47041202	47041202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	176	426	0	ENST00000329236.7:c.1396C>T	p.His466Tyr	p.H466Y	ENST00000329236	NM_001204466.1	466	Cat/Tat																																																																														
EGFR	0	MSKCC	GRCh37	7	55259515	55259516	+	missense_variant	Missense_Mutation	DNP	TG	TG	GC			P-0013675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	170	539	0	ENST00000275493.2:c.2573_2574delinsGC	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTG/cGC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	441	341	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	788	581	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TERT	0	MSKCC	GRCh37	5	1294163	1294163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199701877		P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	330	589	3	ENST00000310581.5:c.838G>A	p.Glu280Lys	p.E280K	ENST00000310581	NM_198253.2	280	Gaa/Aaa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306689	41306689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	381	657	0	ENST00000373198.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000373198	NM_133170.3	324	Gaa/Aaa																																																																														
MLL2	0	MSKCC	GRCh37	12	49437167	49437167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	542	669	0	ENST00000301067.7:c.5512G>A	p.Glu1838Lys	p.E1838K	ENST00000301067	NM_003482.3	1838	Gag/Aag																																																																														
ARID2	0	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	575	800	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29095828	29095828	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	576	617	0	ENST00000328354.6:c.1006C>T	p.Gln336Ter	p.Q336*	ENST00000328354	NM_007194.3	336	Cag/Tag																																																																														
ARID2	0	MSKCC	GRCh37	12	46242662	46242662	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	305	422	0	ENST00000334344.6:c.1624C>T	p.Arg542Ter	p.R542*	ENST00000334344	NM_152641.2	542	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	523	699	0	ENST00000269305.4:c.815T>G	p.Val272Gly	p.V272G	ENST00000269305	NM_001126112.2	272	gTg/gGg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089694	27089694	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	355	493	0	ENST00000324856.7:c.2650T>G	p.Cys884Gly	p.C884G	ENST00000324856	NM_006015.4	884	Tgt/Ggt																																																																														
ARID5B	0	MSKCC	GRCh37	10	63700153	63700153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	294	382	0	ENST00000279873.7:c.488A>T	p.Glu163Val	p.E163V	ENST00000279873	NM_032199.2	163	gAg/gTg																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88635831	88635831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	501	680	0	ENST00000372037.3:c.56C>T	p.Ser19Phe	p.S19F	ENST00000372037	NM_004329.2	19	tCt/tTt																																																																														
RB1	0	MSKCC	GRCh37	13	48955422	48955422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	217	346	0	ENST00000267163.4:c.1538C>T	p.Ser513Phe	p.S513F	ENST00000267163	NM_000321.2	513	tCt/tTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593559	48593559	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	194	285	0	ENST00000342988.3:c.1308+2T>C		p.X436_splice	ENST00000342988	NM_005359.5	436																																																																															
AXL	0	MSKCC	GRCh37	19	41744378	41744378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	430	767	0	ENST00000301178.4:c.998C>T	p.Pro333Leu	p.P333L	ENST00000301178	NM_021913.4	333	cCc/cTc																																																																														
ALK	0	MSKCC	GRCh37	2	29416344	29416344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	590	784	0	ENST00000389048.3:c.4609G>A	p.Gly1537Arg	p.G1537R	ENST00000389048	NM_004304.4	1537	Gga/Aga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40743871	40743871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	527	591	0	ENST00000373198.4:c.3124G>A	p.Glu1042Lys	p.E1042K	ENST00000373198	NM_133170.3	1042	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112090657	112090657	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs145945630		P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	307	510	1	ENST00000257430.4:c.70C>T	p.Arg24Ter	p.R24*	ENST00000257430	NM_000038.5	24	Cga/Tga																																																																														
EPHA7	0	MSKCC	GRCh37	6	93974390	93974390	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	529	773	0	ENST00000369303.4:c.1664T>G	p.Val555Gly	p.V555G	ENST00000369303	NM_004440.3	555	gTt/gGt																																																																														
EGFR	0	MSKCC	GRCh37	7	55240809	55240809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	245	419	1	ENST00000275493.2:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000275493	NM_005228.3	685	Gag/Aag																																																																														
CRLF2	0	MSKCC	GRCh37	X	1321340	1321340	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	393	604	0	ENST00000381566.1:c.415T>A	p.Ser139Thr	p.S139T	ENST00000381566		139	Tct/Act																																																																														
FAT1	0	MSKCC	GRCh37	4	187509960	187509963	+	missense_variant	Missense_Mutation	ONP	GGGG	GGGG	AGGC			P-0013679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	339	555	1	ENST00000441802.2:c.13550_13553delinsGCCT	p.Ala4517_Pro4518delinsGlyLeu	p.A4517_P4518delinsGL	ENST00000441802	NM_005245.3	4517	gCCCCt/gGCCTt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	177	488	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12028611	12028611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	89	568	1	ENST00000353533.5:c.814C>T	p.Pro272Ser	p.P272S	ENST00000353533	NM_003010.3	272	Cct/Tct																																																																														
EZH2	0	MSKCC	GRCh37	7	148514448	148514448	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	114	701	0	ENST00000320356.2:c.1276A>C	p.Lys426Gln	p.K426Q	ENST00000320356	NM_004456.4	426	Aag/Cag																																																																														
MLL3	0	MSKCC	GRCh37	7	151877860	151877878	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGTTGGCACAGGTCCAG	GAAGTTGGCACAGGTCCAG	-			P-0013682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	143	547	0	ENST00000262189.6:c.7067_7085del	p.Pro2356GlnfsTer3	p.P2356Qfs*3	ENST00000262189	NM_170606.2	2356	cCTGGACCTGTGCCAACTTCa/ca																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966955	25966955	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	260	637	0	ENST00000435504.4:c.2251C>G	p.Gln751Glu	p.Q751E	ENST00000435504		751	Cag/Gag																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1277	155	1099	1	ENST00000244661.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000244661	NM_003537.3	74	Gaa/Aaa																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032185	26032185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	107	748	1	ENST00000244661.2:c.104G>T	p.Gly35Val	p.G35V	ENST00000244661	NM_003537.3	35	gGc/gTc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157502208	157502208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	159	427	0	ENST00000346085.5:c.3241G>C	p.Glu1081Gln	p.E1081Q	ENST00000346085	NM_020732.3	1081	Gaa/Caa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106379	27106381	+	frameshift_variant	Frame_Shift_Del	DEL	ATG	ATG	T			P-0013695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	145	403	0	ENST00000324856.7:c.5990_5992delinsT	p.Asn1997IlefsTer3	p.N1997Ifs*3	ENST00000324856	NM_006015.4	1997	aATGac/aTac																																																																														
BIRC3	0	MSKCC	GRCh37	11	102201787	102201787	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	GT			P-0013695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	114	829	0	ENST00000263464.3:c.1139delinsGT	p.Pro380ArgfsTer4	p.P380Rfs*4	ENST00000263464	NM_001165.4	380	cCt/cGTt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	144	411	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023513	31023513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	100	455	0	ENST00000375687.4:c.2998G>A	p.Asp1000Asn	p.D1000N	ENST00000375687	NM_015338.5	1000	Gat/Aat																																																																														
PTEN	0	MSKCC	GRCh37	10	89711873	89711873	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0013703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	36	285	0	ENST00000371953.3:c.493-2A>G		p.X165_splice	ENST00000371953	NM_000314.4	165																																																																															
PTEN	0	MSKCC	GRCh37	10	89720819	89720837	+	frameshift_variant	Frame_Shift_Del	DEL	GATCTTGACAAAGCAAATA	GATCTTGACAAAGCAAATA	-			P-0013703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	38	160	1	ENST00000371953.3:c.970_988del	p.Asp324LysfsTer14	p.D324Kfs*14	ENST00000371953	NM_000314.4	324	GATCTTGACAAAGCAAATAaa/aa																																																																														
MLL2	0	MSKCC	GRCh37	12	49420115	49420121	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCGTA	CCTCGTA	-			P-0013703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	56	522	0	ENST00000301067.7:c.15628_15634del	p.Tyr5210ProfsTer31	p.Y5210Pfs*31	ENST00000301067	NM_003482.3	5210	TACGAGGcc/cc																																																																														
GNAS	0	MSKCC	GRCh37	20	57480495	57480495	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	40	347	0	ENST00000371085.3:c.490del	p.Glu164AsnfsTer8	p.E164Nfs*8	ENST00000371085	NM_000516.4	164	Gaa/aa																																																																														
SETD2	0	MSKCC	GRCh37	3	47161746	47161746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	90	655	0	ENST00000409792.3:c.4380G>T	p.Trp1460Cys	p.W1460C	ENST00000409792	NM_014159.6	1460	tgG/tgT																																																																														
ESR1	0	MSKCC	GRCh37	6	152163866	152163866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	59	503	0	ENST00000206249.3:c.587A>G	p.His196Arg	p.H196R	ENST00000206249	NM_000125.3	196	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	82	400	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115830	8115830	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	104	783	0	ENST00000346208.3:c.1176C>A	p.Asn392Lys	p.N392K	ENST00000346208		392	aaC/aaA																																																																														
MGA	0	MSKCC	GRCh37	15	42021478	42021479	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	193	962	0	ENST00000219905.7:c.3775dup	p.Ser1259PhefsTer15	p.S1259Ffs*15	ENST00000219905	NM_001164273.1	1258	-/T																																																																														
NF1	0	MSKCC	GRCh37	17	29652930	29652930	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	129	545	0	ENST00000358273.4:c.4928T>A	p.Val1643Glu	p.V1643E	ENST00000358273	NM_001042492.2	1643	gTg/gAg																																																																														
ESR1	0	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	216	360	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	166	318	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	205	339	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0013723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	223	468	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
PTEN	0	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0013723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	95	176	0	ENST00000371953.3:c.176C>G	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tGa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11105570	11105570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	243	404	0	ENST00000344626.4:c.1486A>G	p.Lys496Glu	p.K496E	ENST00000344626	NM_003072.3	496	Aaa/Gaa																																																																														
AKT2	0	MSKCC	GRCh37	19	40743901	40743901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	339	592	1	ENST00000392038.2:c.806G>A	p.Arg269Gln	p.R269Q	ENST00000392038	NM_001626.4	269	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	368	572	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554093	63554093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	121	756	0	ENST00000307078.5:c.646G>A	p.Gly216Arg	p.G216R	ENST00000307078	NM_004655.3	216	Ggg/Agg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55151591	55151591	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	126	615	0	ENST00000257290.5:c.2377T>G	p.Leu793Val	p.L793V	ENST00000257290	NM_006206.4	793	Ttg/Gtg																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197403	26197403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1321	237	972	0	ENST00000356476.2:c.76G>A	p.Ala26Thr	p.A26T	ENST00000356476		26	Gct/Act																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	190	520	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579318	7579321	+	frameshift_variant	Frame_Shift_Del	DEL	AGTC	AGTC	-			P-0013766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	147	471	0	ENST00000269305.4:c.366_369del	p.Thr123AlafsTer46	p.T123Afs*46	ENST00000269305	NM_001126112.2	122	gtGACT/gt																																																																														
JAK3	0	MSKCC	GRCh37	19	17937673	17937673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	126	463	1	ENST00000458235.1:c.3254G>A	p.Arg1085Gln	p.R1085Q	ENST00000458235	NM_000215.3	1085	cGg/cAg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713673	30713674	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0013766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	136	404	0	ENST00000359013.4:c.1075_1076dup	p.Gln359HisfsTer5	p.Q359Hfs*5	ENST00000359013	NM_001024847.2	358	cta/ctACa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52610605	52610607	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0013766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	205	652	0	ENST00000394830.3:c.3566_3568del	p.Glu1189del	p.E1189del	ENST00000394830	NM_018313.4	1189	gAAGta/gta																																																																														
JAK2	0	MSKCC	GRCh37	9	5080575	5080575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	204	628	0	ENST00000381652.3:c.2326A>C	p.Lys776Gln	p.K776Q	ENST00000381652	NM_004972.3	776	Aag/Cag																																																																														
KIT	0	MSKCC	GRCh37	4	55593583	55593609	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	AACCCATGTATGAAGTACAGTGGAAGG	AACCCATGTATGAAGTACAGTGGAAGG	-			P-0013789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	260	607	0	ENST00000288135.5:c.1649_1675del	p.Lys550_Val559delinsIle	p.K550_V559delinsI	ENST00000288135	NM_000222.2	550	aAACCCATGTATGAAGTACAGTGGAAGGtt/att																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	443	597	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	200	483	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0013799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	269	354	1	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114711002	114711002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	143	514	2	ENST00000543371.1:c.226C>T	p.Arg76Ter	p.R76*	ENST00000543371	NM_001198531.1	76	Cga/Tga																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871646	35871646	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	149	730	0	ENST00000216797.5:c.860A>T	p.Glu287Val	p.E287V	ENST00000216797	NM_020529.2	287	gAg/gTg																																																																														
FLCN	0	MSKCC	GRCh37	17	17119745	17119745	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	120	581	0	ENST00000285071.4:c.1249T>G	p.Phe417Val	p.F417V	ENST00000285071	NM_144997.5	417	Ttc/Gtc																																																																														
MLL2	0	MSKCC	GRCh37	12	49434502	49434502	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	280	436	0	ENST00000301067.7:c.7051G>T	p.Glu2351Ter	p.E2351*	ENST00000301067	NM_003482.3	2351	Gag/Tag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32930723	32930723	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	306	462	0	ENST00000380152.3:c.7596del	p.Ser2533LeufsTer18	p.S2533Lfs*18	ENST00000380152		2532	Ccc/cc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	302	385	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	83	146	0				ENST00000310581	NM_198253.2																																																																																
SRSF2	0	MSKCC	GRCh37	17	74733238	74733239	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0013847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	343	535	0	ENST00000359995.5:c.4_5del	p.Ser2LeufsTer67	p.S2Lfs*67	ENST00000359995	NM_001195427.1	2	AGc/c																																																																														
SETD2	0	MSKCC	GRCh37	3	47125635	47125635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	397	661	1	ENST00000409792.3:c.5635C>T	p.Arg1879Cys	p.R1879C	ENST00000409792	NM_014159.6	1879	Cgc/Tgc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828257	72828257	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	31	1190	2	ENST00000268489.5:c.8324delC	p.Pro2775GlnfsTer14	p.P2775Qfs*14	ENST00000268489	NM_006885.3	2775	cCa/ca																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870895	12870895	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	19	400	0	ENST00000228872.4:c.122T>G	p.Leu41Ter	p.L41*	ENST00000228872	NM_004064.3	41	tTa/tGa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44928899	44928899	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	14	477	0	ENST00000377967.4:c.1999C>T	p.Gln667Ter	p.Q667*	ENST00000377967	NM_021140.2	667	Cag/Tag																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0013860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	140	495	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	17	548	1	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																														
TMEM127	0	MSKCC	GRCh37	2	96920652	96920652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	52	665	0	ENST00000258439.3:c.328G>T	p.Ala110Ser	p.A110S	ENST00000258439	NM_001193304.2	110	Gct/Tct																																																																														
INPP4B	0	MSKCC	GRCh37	4	143029325	143029325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	46	399	0	ENST00000262992.4:c.2295G>T	p.Leu765Phe	p.L765F	ENST00000262992	NM_001101669.1	765	ttG/ttT																																																																														
EGFR	0	MSKCC	GRCh37	7	55249016	55249017	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCACG			P-0013860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	309	628	0	ENST00000275493.2:c.2315_2320dup	p.His773_Val774insAlaHis	p.H773_V774insAH	ENST00000275493	NM_005228.3	772	ccc/cCCCACGcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	109	497	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	61	417	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	96	528	0	ENST00000269305.4:c.440T>G	p.Val147Gly	p.V147G	ENST00000269305	NM_001126112.2	147	gTt/gGt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170729	11170729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	106	613	1	ENST00000344626.4:c.4777G>A	p.Val1593Ile	p.V1593I	ENST00000344626	NM_003072.3	1593	Gtc/Atc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741697	17741697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	83	459	1	ENST00000250003.3:c.368G>A	p.Ser123Asn	p.S123N	ENST00000250003	NM_002478.4	123	aGc/aAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	81	265	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160679	56160680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	214	611	0	ENST00000399503.3:c.954dupA	p.Leu319ThrfsTer7	p.L319Tfs*7	ENST00000399503	NM_005921.1	318	tta/ttAa																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870895	12870895	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	56	356	0	ENST00000228872.4:c.122T>G	p.Leu41Ter	p.L41*	ENST00000228872	NM_004064.3	41	tTa/tGa																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871035	12871035	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	137	415	1	ENST00000228872.4:c.262del	p.Tyr88ThrfsTer31	p.Y88Tfs*31	ENST00000228872	NM_004064.3	88	Tac/ac																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66781595	66781595	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	133	608	0	ENST00000307102.5:c.1003C>T	p.Gln335Ter	p.Q335*	ENST00000307102	NM_002755.3	335	Caa/Taa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177100	56177100	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	82	225	0	ENST00000399503.3:c.2369+1G>A		p.X790_splice	ENST00000399503	NM_005921.1	790																																																																															
PTPRD	0	MSKCC	GRCh37	9	8636743	8636743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	46	357	0	ENST00000356435.5:c.166G>T	p.Val56Phe	p.V56F	ENST00000356435		56	Gtc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0013908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	207	495	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
GATA3	0	MSKCC	GRCh37	10	8115903	8115904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	118	534	0	ENST00000346208.3:c.1251dupC	p.Thr418HisfsTer89	p.T418Hfs*89	ENST00000346208		417	acc/aCcc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2220678	2220678	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	269	535	0	ENST00000326181.6:c.295T>C	p.Ser99Pro	p.S99P	ENST00000326181	NM_032271.2	99	Tcc/Ccc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279346	18279346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	78	401	1	ENST00000222254.8:c.1798G>A	p.Glu600Lys	p.E600K	ENST00000222254	NM_005027.3	600	Gag/Aag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098918	178098918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	96	544	0	ENST00000397062.3:c.127C>G	p.Arg43Gly	p.R43G	ENST00000397062	NM_006164.4	43	Cgg/Ggg																																																																														
FAT1	0	MSKCC	GRCh37	4	187518299	187518299	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	40	152	0	ENST00000441802.2:c.12395C>G	p.Ser4132Cys	p.S4132C	ENST00000441802	NM_005245.3	4132	tCt/tGt																																																																														
RICTOR	0	MSKCC	GRCh37	5	38952409	38952409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	119	446	1	ENST00000357387.3:c.3016G>A	p.Asp1006Asn	p.D1006N	ENST00000357387	NM_152756.3	1006	Gat/Aat																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100115	157100115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	18	25	1	ENST00000346085.5:c.1052G>C	p.Gly351Ala	p.G351A	ENST00000346085	NM_020732.3	351	gGa/gCa																																																																														
XIAP	0	MSKCC	GRCh37	X	123025137	123025137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	222	532	0	ENST00000355640.3:c.1027C>A	p.His343Asn	p.H343N	ENST00000355640		343	Cat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7576876	7576876	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	184	690	4	ENST00000269305.4:c.970del	p.Asp324MetfsTer21	p.D324Mfs*21	ENST00000269305	NM_001126112.2	324	Gat/at																																																																														
RYBP	0	MSKCC	GRCh37	3	72427711	72427711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	92	574	0	ENST00000477973.2:c.777C>A	p.Thr260Lys	p.T260K	ENST00000477973	NM_012234.5	260	aCa/aAa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149502612	149502612	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013918-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	44	318	0	ENST00000261799.4:c.2176C>G	p.Leu726Val	p.L726V	ENST00000261799	NM_002609.3	726	Ctg/Gtg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	345	779	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94178987	94178987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	49	559	0	ENST00000323929.3:c.1856C>G	p.Ser619Cys	p.S619C	ENST00000323929	NM_005591.3	619	tCt/tGt																																																																														
INSR	0	MSKCC	GRCh37	19	7267357	7267357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0013928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	50	462	0	ENST00000302850.5:c.651A>T	p.Lys217Asn	p.K217N	ENST00000302850	NM_000208.2	217	aaA/aaT																																																																														
TERT	0	MSKCC	GRCh37	5	1294242	1294242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	190	407	0	ENST00000310581.5:c.759G>T	p.Gln253His	p.Q253H	ENST00000310581	NM_198253.2	253	caG/caT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	221	615	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	212	441	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0013931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	203	893	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591138	67591139	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	61	490	0	ENST00000274335.5:c.1732dup	p.Asp578GlyfsTer24	p.D578Gfs*24	ENST00000274335		577	-/G																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591146	67591147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	63	492	0	ENST00000274335.5:c.1740dup	p.Met582AspfsTer20	p.M582Dfs*20	ENST00000274335		580	tac/taCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	205	633	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	85	166	0				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	255	636	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
ATM	0	MSKCC	GRCh37	11	108216568	108216568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	62	605	0	ENST00000278616.4:c.8517C>A	p.Phe2839Leu	p.F2839L	ENST00000278616	NM_000051.3	2839	ttC/ttA																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	113	495	1	ENST00000342988.3:c.1217C>T	p.Ala406Val	p.A406V	ENST00000342988	NM_005359.5	406	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	69	371	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153245501	153245501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1024060344		P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	65	468	2	ENST00000281708.4:c.1690C>T	p.Arg564Cys	p.R564C	ENST00000281708	NM_033632.3	564	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112174310	112174310	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	115	440	0	ENST00000257430.4:c.3022del	p.Ile1008TyrfsTer14	p.I1008Yfs*14	ENST00000257430	NM_000038.5	1007	Aaa/aa																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271492	26271492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1311	470	1198	0	ENST00000305910.3:c.121C>G	p.Arg41Gly	p.R41G	ENST00000305910	NM_003534.2	41	Cgc/Ggc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44920620	44920620	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	201	669	3	ENST00000377967.4:c.1381C>T	p.Gln461Ter	p.Q461*	ENST00000377967	NM_021140.2	461	Cag/Tag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974698	21975012	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	ACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGG	ACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGG	-			P-0013951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	352	572	0	ENST00000304494.5:c.-186_129delCCCCTTGCCTGGAAAGATACCGCGGTCCCTCCAGAGGATTTGAGGGACAGGGTCGGAGGGGGCTCTTCCGCCAGCACCGGAGGAAGAAAGAGGAGGGGCTGGCTGGTCACCAGAGGGTGGGGCGGACCGCGTGCGCTCGGCGGCTGCGGAGAGGGGGAGAGCAGGCAGCGGGCGGCGGGGAGCAGCATGGAGCCGGCGGCGGGGAGCAGCATGGAGCCTTCGGCTGACTGGCTGGCCACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTGCGGGCGCTGCTGGAGGCGGGGGCGCTGCCCAACGCACCGAATAGT		p.*62*	ENST00000304494	NM_000077.4	62																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974698	21975012	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	ACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGG	ACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCTCTGGTGACCAGCCAGCCCCTCCTCTTTCTTCCTCCGGTGCTGGCGGAAGAGCCCCCTCCGACCCTGTCCCTCAAATCCTCTGGAGGGACCGCGGTATCTTTCCAGGCAAGGGG	-			P-0013951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	352	572	0	ENST00000304494.5:c.-186_129delCCCCTTGCCTGGAAAGATACCGCGGTCCCTCCAGAGGATTTGAGGGACAGGGTCGGAGGGGGCTCTTCCGCCAGCACCGGAGGAAGAAAGAGGAGGGGCTGGCTGGTCACCAGAGGGTGGGGCGGACCGCGTGCGCTCGGCGGCTGCGGAGAGGGGGAGAGCAGGCAGCGGGCGGCGGGGAGCAGCATGGAGCCGGCGGCGGGGAGCAGCATGGAGCCTTCGGCTGACTGGCTGGCCACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTGCGGGCGCTGCTGGAGGCGGGGGCGCTGCCCAACGCACCGAATAGT		p.*62*	ENST00000304494	NM_000077.4	62																																																																															
PTEN	0	MSKCC	GRCh37	10	89685288	89685289	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	113	318	0	ENST00000371953.3:c.188dupA	p.Asn63LysfsTer11	p.N63Kfs*11	ENST00000371953	NM_000314.4	61	-/A																																																																														
FAT1	0	MSKCC	GRCh37	4	187549397	187549397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	285	824	2	ENST00000441802.2:c.4721C>T	p.Ser1574Leu	p.S1574L	ENST00000441802	NM_005245.3	1574	tCg/tTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	25	685	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	3328	531	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
WT1	0	MSKCC	GRCh37	11	32414214	32414214	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1128	142	692	0	ENST00000332351.3:c.1337C>T	p.Thr446Ile	p.T446I	ENST00000332351	NM_024426.4	446	aCa/aTa																																																																														
MGA	0	MSKCC	GRCh37	15	42059419	42059419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1276	251	1085	0	ENST00000219905.7:c.9139G>A	p.Ala3047Thr	p.A3047T	ENST00000219905	NM_001164273.1	3047	Gca/Aca																																																																														
TP53	0	MSKCC	GRCh37	17	7578501	7578502	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0014005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	181	509	0	ENST00000269305.4:c.428_429delTG	p.Val143AlafsTer5	p.V143Afs*5	ENST00000269305	NM_001126112.2	143	gTG/g																																																																														
CRKL	0	MSKCC	GRCh37	22	21288317	21288317	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1468	229	747	1	ENST00000354336.3:c.562G>T	p.Gly188Ter	p.G188*	ENST00000354336	NM_005207.3	188	Gga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4344	192	488	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0014009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	312	597	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
MLL3	0	MSKCC	GRCh37	7	151843694	151843717	+	inframe_deletion	In_Frame_Del	DEL	ATGCGTGCCACTGCAGAGACGGTC	ATGCGTGCCACTGCAGAGACGGTC	-			P-0014009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	233	438	0	ENST00000262189.6:c.13998_14021del	p.Thr4667_Ile4674del	p.T4667_I4674del	ENST00000262189	NM_170606.2	4666	ctGACCGTCTCTGCAGTGGCACGCATa/cta																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900164	101900164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	267	514	0	ENST00000374994.4:c.598A>G	p.Thr200Ala	p.T200A	ENST00000374994	NM_004612.2	200	Aca/Gca																																																																														
TSC1	0	MSKCC	GRCh37	9	135798764	135798764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	81	393	1	ENST00000298552.3:c.479G>A	p.Arg160His	p.R160H	ENST00000298552	NM_001162426.1	160	cGt/cAt																																																																														
SUFU	0	MSKCC	GRCh37	10	104359276	104359276	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	237	622	0	ENST00000369902.3:c.998del	p.Asn333MetfsTer28	p.N333Mfs*28	ENST00000369902	NM_016169.3	333	Aat/at																																																																														
MLL2	0	MSKCC	GRCh37	12	49427974	49427974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	82	727	0	ENST00000301067.7:c.10616G>A	p.Arg3539Gln	p.R3539Q	ENST00000301067	NM_003482.3	3539	cGg/cAg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481882	56481882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	308	874	0	ENST00000267101.3:c.810C>G	p.Phe270Leu	p.F270L	ENST00000267101	NM_001982.3	270	ttC/ttG																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041800	14041800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	164	637	0	ENST00000311895.7:c.2347G>T	p.Asp783Tyr	p.D783Y	ENST00000311895	NM_005236.2	783	Gac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	86	626	17	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
SETD2	0	MSKCC	GRCh37	3	47125800	47125800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	129	392	0	ENST00000409792.3:c.5470A>G	p.Ile1824Val	p.I1824V	ENST00000409792	NM_014159.6	1824	Att/Gtt																																																																														
SHQ1	0	MSKCC	GRCh37	3	72799968	72799968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	120	368	0	ENST00000325599.8:c.1201C>T	p.Leu401Phe	p.L401F	ENST00000325599	NM_018130.2	401	Ctt/Ttt																																																																														
ATR	0	MSKCC	GRCh37	3	142272715	142272715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	186	893	0	ENST00000350721.4:c.2484C>G	p.Ile828Met	p.I828M	ENST00000350721	NM_001184.3	828	atC/atG																																																																														
PMS2	0	MSKCC	GRCh37	7	6038854	6038854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	105	753	0	ENST00000265849.7:c.590G>C	p.Gly197Ala	p.G197A	ENST00000265849	NM_000535.5	197	gGc/gCc																																																																														
ATRX	0	MSKCC	GRCh37	X	76763954	76763954	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	126	534	0	ENST00000373344.5:c.7354C>G	p.Gln2452Glu	p.Q2452E	ENST00000373344	NM_000489.3	2452	Cag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014075-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			412	13	232	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
FLT3	0	MSKCC	GRCh37	13	28578214	28578214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014075-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			718	59	600	0	ENST00000241453.7:c.2957C>T	p.Pro986Leu	p.P986L	ENST00000241453	NM_004119.2	986	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578456	7578467	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGACGCGGGT	GCGGACGCGGGT	CC			P-0014075-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			447	266	499	2	ENST00000269305.4:c.463_474delinsGG	p.Thr155GlyfsTer12	p.T155Gfs*12	ENST00000269305	NM_001126112.2	155	ACCCGCGTCCGC/GG																																																																														
MET	0	MSKCC	GRCh37	7	116340015	116340015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014075-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			471	59	347	0	ENST00000397752.3:c.877G>A	p.Glu293Lys	p.E293K	ENST00000397752	NM_000245.2	293	Gaa/Aaa																																																																														
MET	0	MSKCC	GRCh37	7	116411879	116411918	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATT	CTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATT	-			P-0014075-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			273	214	289	0	ENST00000397752.3:c.2888-24_2903del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
MED12	0	MSKCC	GRCh37	X	70349892	70349892	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014075-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			305	193	337	0	ENST00000374080.3:c.3875T>A	p.Val1292Glu	p.V1292E	ENST00000374080		1292	gTa/gAa																																																																														
CASP8	0	MSKCC	GRCh37	2	202131405	202131405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014075-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			626	46	492	0	ENST00000358485.4:c.373C>A	p.Leu125Ile	p.L125I	ENST00000358485	NM_001080125.1	125	Ctc/Atc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	76	599	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0014091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1627	37	1141	1	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	361	514	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	332	691	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350233	89350233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1252	144	1179	1	ENST00000301030.4:c.2717G>A	p.Arg906Gln	p.R906Q	ENST00000301030	NM_001256183.1	906	cGa/cAa																																																																														
MGA	0	MSKCC	GRCh37	15	42003234	42003234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	150	1002	0	ENST00000219905.7:c.2771C>T	p.Ser924Leu	p.S924L	ENST00000219905	NM_001164273.1	924	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	566	486	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	264	478	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
AKT3	0	MSKCC	GRCh37	1	243736342	243736342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	152	524	3	ENST00000263826.5:c.705C>A	p.Phe235Leu	p.F235L	ENST00000263826	NM_005465.4	235	ttC/ttA																																																																														
ATM	0	MSKCC	GRCh37	11	108150268	108150269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	223	531	0	ENST00000278616.4:c.3338dup	p.Leu1113PhefsTer9	p.L1113Ffs*9	ENST00000278616	NM_000051.3	1112	cct/ccTt																																																																														
ATM	0	MSKCC	GRCh37	11	108218092	108218092	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	136	288	0	ENST00000278616.4:c.8671G>T	p.Gly2891Cys	p.G2891C	ENST00000278616	NM_000051.3	2891	Ggt/Tgt																																																																														
FLT3	0	MSKCC	GRCh37	13	28636144	28636144	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	222	669	1	ENST00000241453.7:c.228C>A	p.Tyr76Ter	p.Y76*	ENST00000241453	NM_004119.2	76	taC/taA																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467557	66467557	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	326	584	0	ENST00000273854.3:c.712C>T	p.Arg238Ter	p.R238*	ENST00000273854	NM_004439.5	238	Cga/Tga																																																																														
AMER1	0	MSKCC	GRCh37	X	63410365	63410365	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	570	544	1	ENST00000330258.3:c.2802G>C	p.Glu934Asp	p.E934D	ENST00000330258	NM_152424.3	934	gaG/gaC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	15	471	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	86	421	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
FAT1	0	MSKCC	GRCh37	4	187628470	187628470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	67	607	1	ENST00000441802.2:c.2512C>A	p.His838Asn	p.H838N	ENST00000441802	NM_005245.3	838	Cat/Aat																																																																														
NSD1	0	MSKCC	GRCh37	5	176637295	176637295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201702515		P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	153	451	1	ENST00000439151.2:c.1895G>A	p.Arg632Gln	p.R632Q	ENST00000439151	NM_022455.4	632	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	793	805	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15973811	15973811	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	370	473	0	ENST00000268712.3:c.4181C>G	p.Ser1394Ter	p.S1394*	ENST00000268712	NM_006311.3	1394	tCa/tGa																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197399	26197399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1620	313	1244	0	ENST00000356476.2:c.80G>C	p.Arg27Pro	p.R27P	ENST00000356476		27	cGa/cCa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024491	31024491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	166	606	0	ENST00000375687.4:c.3976C>T	p.Pro1326Ser	p.P1326S	ENST00000375687	NM_015338.5	1326	Cct/Tct																																																																														
MTOR	0	MSKCC	GRCh37	1	11174379	11174379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	245	566	0	ENST00000361445.4:c.7296G>A	p.Met2432Ile	p.M2432I	ENST00000361445	NM_004958.3	2432	atG/atA																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9776498	9776498	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	225	666	0	ENST00000377346.4:c.601G>C	p.Glu201Gln	p.E201Q	ENST00000377346	NM_005026.3	201	Gag/Cag																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9784137	9784137	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202142608		P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	179	503	1	ENST00000377346.4:c.2705G>A	p.Arg902Gln	p.R902Q	ENST00000377346	NM_005026.3	902	cGa/cAa																																																																														
MPL	0	MSKCC	GRCh37	1	43805735	43805735	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	342	798	0	ENST00000372470.3:c.791C>G	p.Ser264Cys	p.S264C	ENST00000372470	NM_005373.2	264	tCc/tGc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156848963	156848963	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	370	627	0	ENST00000524377.1:c.1855C>G	p.Pro619Ala	p.P619A	ENST00000524377	NM_002529.3	619	Cca/Gca																																																																														
GATA3	0	MSKCC	GRCh37	10	8100630	8100630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	69	761	0	ENST00000346208.3:c.604C>T	p.Arg202Cys	p.R202C	ENST00000346208		202	Cgt/Tgt																																																																														
RET	0	MSKCC	GRCh37	10	43623634	43623635	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	315	599	0	ENST00000355710.3:c.3262_3263delinsAA	p.Pro1088Lys	p.P1088K	ENST00000355710	NM_020975.4	1088	CCa/AAa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123247602	123247602	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	386	512	0	ENST00000358487.5:c.1889G>C	p.Arg630Thr	p.R630T	ENST00000358487	NM_000141.4	630	aGa/aCa																																																																														
FGF19	0	MSKCC	GRCh37	11	69518601	69518601	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	62	244	0	ENST00000294312.3:c.44G>C	p.Gly15Ala	p.G15A	ENST00000294312	NM_005117.2	15	gGc/gCc																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195243	102195243	+	start_lost	Translation_Start_Site	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	238	776	0	ENST00000263464.3:c.3G>C	p.Met1?	p.M1?	ENST00000263464	NM_001165.4	1	atG/atC																																																																														
GLI1	0	MSKCC	GRCh37	12	57865801	57865801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	1026	1267	0	ENST00000228682.2:c.3278G>C	p.Arg1093Thr	p.R1093T	ENST00000228682	NM_005269.2	1093	aGa/aCa																																																																														
SOCS1	0	MSKCC	GRCh37	16	11349250	11349250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	57	166	0	ENST00000332029.2:c.86C>T	p.Ser29Phe	p.S29F	ENST00000332029	NM_003745.1	29	tCc/tTc																																																																														
NUP93	0	MSKCC	GRCh37	16	56873439	56873439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	724	1141	0	ENST00000308159.5:c.2143G>C	p.Glu715Gln	p.E715Q	ENST00000308159	NM_014669.4	715	Gag/Cag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992774	72992774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	310	1042	0	ENST00000268489.5:c.1271C>A	p.Ala424Asp	p.A424D	ENST00000268489	NM_006885.3	424	gCt/gAt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16075133	16075133	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	99	367	0	ENST00000268712.3:c.419C>G	p.Ser140Cys	p.S140C	ENST00000268712	NM_006311.3	140	tCt/tGt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41223192	41223192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	528	585	0	ENST00000357654.3:c.4739C>T	p.Ser1580Phe	p.S1580F	ENST00000357654	NM_007294.3	1580	tCt/tTt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41223201	41223201	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	522	560	0	ENST00000357654.3:c.4730C>G	p.Ser1577Cys	p.S1577C	ENST00000357654	NM_007294.3	1577	tCt/tGt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59761499	59761499	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	75	272	0	ENST00000259008.2:c.2908G>T	p.Asp970Tyr	p.D970Y	ENST00000259008	NM_032043.2	970	Gat/Tat																																																																														
TCF3	0	MSKCC	GRCh37	19	1627384	1627384	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	305	898	0	ENST00000344749.5:c.340G>C	p.Asp114His	p.D114H	ENST00000344749	NM_001136139.2	114	Gac/Cac																																																																														
CEBPA	0	MSKCC	GRCh37	19	33793134	33793134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1478	205	681	0	ENST00000498907.2:c.187G>C	p.Asp63His	p.D63H	ENST00000498907	NM_004364.3	63	Gac/Cac																																																																														
AURKA	0	MSKCC	GRCh37	20	54961366	54961366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	125	368	0	ENST00000312783.6:c.266C>G	p.Ser89Cys	p.S89C	ENST00000312783	NM_198436.1	89	tCc/tGc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134884907	134884907	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	351	692	0	ENST00000398015.3:c.1683C>G	p.Ile561Met	p.I561M	ENST00000398015	NM_004441.4	561	atC/atG																																																																														
ATR	0	MSKCC	GRCh37	3	142268415	142268415	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	105	344	0	ENST00000350721.4:c.3077G>C	p.Arg1026Thr	p.R1026T	ENST00000350721	NM_001184.3	1026	aGa/aCa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217191	66217191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	190	721	0	ENST00000273854.3:c.2424C>G	p.Ile808Met	p.I808M	ENST00000273854	NM_004439.5	808	atC/atG																																																																														
TERT	0	MSKCC	GRCh37	5	1295098	1295098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	62	111	1	ENST00000310581.5:c.7C>T	p.Arg3Cys	p.R3C	ENST00000310581	NM_198253.2	3	Cgc/Tgc																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197253	26197253	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1928	454	1564	0	ENST00000356476.2:c.226G>C	p.Ala76Pro	p.A76P	ENST00000356476		76	Gcg/Ccg																																																																														
PNRC1	0	MSKCC	GRCh37	6	89793641	89793641	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	373	595	0	ENST00000336032.3:c.710A>T	p.Gln237Leu	p.Q237L	ENST00000336032	NM_006813.2	237	cAg/cTg																																																																														
CARD11	0	MSKCC	GRCh37	7	2946340	2946340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	441	681	0	ENST00000396946.4:c.3397C>T	p.Arg1133Cys	p.R1133C	ENST00000396946	NM_032415.4	1133	Cgc/Tgc																																																																														
HGF	0	MSKCC	GRCh37	7	81355256	81355256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	219	767	0	ENST00000222390.5:c.1118G>T	p.Arg373Leu	p.R373L	ENST00000222390	NM_000601.4	373	cGa/cTa																																																																														
EZH2	0	MSKCC	GRCh37	7	148513796	148513796	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	464	762	0	ENST00000320356.2:c.1485G>T	p.Arg495Ser	p.R495S	ENST00000320356	NM_004456.4	495	agG/agT																																																																														
AR	0	MSKCC	GRCh37	X	66905896	66905896	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	449	421	0	ENST00000374690.3:c.1813G>C	p.Asp605His	p.D605H	ENST00000374690	NM_000044.3	605	Gat/Cat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	155	510	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	49	349	1				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	93	486	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
GLI1	0	MSKCC	GRCh37	12	57865659	57865659	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	60	1125	0	ENST00000228682.2:c.3136C>T	p.Gln1046Ter	p.Q1046*	ENST00000228682	NM_005269.2	1046	Cag/Tag																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988379	36988379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	37	195	0	ENST00000354822.5:c.274G>T	p.Gly92Cys	p.G92C	ENST00000354822	NM_001079668.2	92	Ggc/Tgc																																																																														
DICER1	0	MSKCC	GRCh37	14	95579509	95579509	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	59	359	0	ENST00000343455.3:c.1960A>G	p.Arg654Gly	p.R654G	ENST00000343455	NM_177438.2	654	Aga/Gga																																																																														
MGA	0	MSKCC	GRCh37	15	42005382	42005382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	82	1109	0	ENST00000219905.7:c.3118A>G	p.Ile1040Val	p.I1040V	ENST00000219905	NM_001164273.1	1040	Ata/Gta																																																																														
NCOR1	0	MSKCC	GRCh37	17	16004883	16004883	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	93	606	0	ENST00000268712.3:c.2371G>C	p.Glu791Gln	p.E791Q	ENST00000268712	NM_006311.3	791	Gag/Cag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2216394	2216394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	69	458	1	ENST00000398665.3:c.2038G>T	p.Gly680Cys	p.G680C	ENST00000398665	NM_032482.2	680	Ggc/Tgc																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792825	33792825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	28	385	0	ENST00000498907.2:c.496G>A	p.Glu166Lys	p.E166K	ENST00000498907	NM_004364.3	166	Gag/Aag																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52714643	52714643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	114	533	0	ENST00000322088.6:c.401G>T	p.Arg134Leu	p.R134L	ENST00000322088	NM_014225.5	134	cGg/cTg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25523040	25523040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	80	865	2	ENST00000264709.3:c.145G>A	p.Gly49Arg	p.G49R	ENST00000264709	NM_175629.2	49	Ggg/Agg																																																																														
BARD1	0	MSKCC	GRCh37	2	215657105	215657105	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	48	568	0	ENST00000260947.4:c.280G>C	p.Asp94His	p.D94H	ENST00000260947	NM_000465.2	94	Gac/Cac																																																																														
CHEK2	0	MSKCC	GRCh37	22	29095859	29095859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	101	711	0	ENST00000328354.6:c.975G>T	p.Lys325Asn	p.K325N	ENST00000328354	NM_007194.3	325	aaG/aaT																																																																														
EP300	0	MSKCC	GRCh37	22	41566550	41566550	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	44	631	0	ENST00000263253.7:c.4427C>G	p.Ser1476Ter	p.S1476*	ENST00000263253	NM_001429.3	1476	tCa/tGa																																																																														
MITF	0	MSKCC	GRCh37	3	69998250	69998250	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	105	592	0	ENST00000352241.4:c.811C>G	p.Pro271Ala	p.P271A	ENST00000352241	NM_198159.2	271	Ccc/Gcc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71247442	71247442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	105	648	0	ENST00000318789.4:c.91G>T	p.Gly31Cys	p.G31C	ENST00000318789	NM_032682.5	31	Ggt/Tgt																																																																														
NSD1	0	MSKCC	GRCh37	5	176721016	176721016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	78	517	0	ENST00000439151.2:c.6647G>T	p.Gly2216Val	p.G2216V	ENST00000439151	NM_022455.4	2216	gGg/gTg																																																																														
MDC1	0	MSKCC	GRCh37	6	30674464	30675162	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGGGAGGCTGAGGGAGGAGAGTCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTGTCTCAAAAAAAACAAAAAAATACACAAAAATTAGCCGGGTGACATGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGCGGCAGGAAAATTGTTTGAACCCAAGAGACGGAGGTTACAGTAAGCTGAGATCACGCCACTGCACACTCCAGCCTGGGTGACAGAGACAGACTCTGTCTCAAAAAAGAACAAAAACAAAAAATATGCTCACTGGATTTTCCTTTCTGTCTATGATCTCTCCTCCATTAGACTGGGATCTACCTGGGAAGCTACCTTTTTCCCACAGACCTGTCTCCATAATGCTACTATAGTGTTCTCCACACGTGGATGATGGTAAGGAAAAGGATGGCTGGGGCAAAGAAAGAAGAAACACGAAGGGTCTTTCTTTTGAGTCAGGTAGGAGATACAACTTAGGAAACAGATATGGAAAACAACGGGTGCCGAGGATAAAGGAATAGAAGCCAATCAAGGCGTGACAAAAATGGAAGAAAACTGAATAATGAGAAAGGAATAGATTAAAGTGAGGCTAGGTGAAAGAGCATTGGAGAAGATATAGAGATGACTTGTGGAATAGGAGGTAGAAAAAGTAGCTCTCACCC	CCTGGGAGGCTGAGGGAGGAGAGTCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTGTCTCAAAAAAAACAAAAAAATACACAAAAATTAGCCGGGTGACATGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGCGGCAGGAAAATTGTTTGAACCCAAGAGACGGAGGTTACAGTAAGCTGAGATCACGCCACTGCACACTCCAGCCTGGGTGACAGAGACAGACTCTGTCTCAAAAAAGAACAAAAACAAAAAATATGCTCACTGGATTTTCCTTTCTGTCTATGATCTCTCCTCCATTAGACTGGGATCTACCTGGGAAGCTACCTTTTTCCCACAGACCTGTCTCCATAATGCTACTATAGTGTTCTCCACACGTGGATGATGGTAAGGAAAAGGATGGCTGGGGCAAAGAAAGAAGAAACACGAAGGGTCTTTCTTTTGAGTCAGGTAGGAGATACAACTTAGGAAACAGATATGGAAAACAACGGGTGCCGAGGATAAAGGAATAGAAGCCAATCAAGGCGTGACAAAAATGGAAGAAAACTGAATAATGAGAAAGGAATAGATTAAAGTGAGGCTAGGTGAAAGAGCATTGGAGAAGATATAGAGATGACTTGTGGAATAGGAGGTAGAAAAAGTAGCTCTCACCC	-			P-0014172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	55	0	0	ENST00000376406.3:c.3083_3085-589del		p.X1028_splice	ENST00000376406	NM_014641.2	1028																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	74	534	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112173968	112173968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	215	334	0	ENST00000257430.4:c.2677G>T	p.Glu893Ter	p.E893*	ENST00000257430	NM_000038.5	893	Gaa/Taa																																																																														
CDH1	0	MSKCC	GRCh37	16	68856093	68856093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	210	632	0	ENST00000261769.5:c.1901C>T	p.Ala634Val	p.A634V	ENST00000261769	NM_004360.3	634	gCg/gTg																																																																														
APC	0	MSKCC	GRCh37	5	112128142	112128142	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0014182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	68	345	0	ENST00000257430.4:c.646-1G>A		p.X216_splice	ENST00000257430	NM_000038.5	216																																																																															
ARID1A	0	MSKCC	GRCh37	1	27101195	27101195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	211	690	0	ENST00000324856.7:c.4477C>T	p.Gln1493Ter	p.Q1493*	ENST00000324856	NM_006015.4	1493	Cag/Tag																																																																														
SOX9	0	MSKCC	GRCh37	17	70120042	70120042	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	47	62	0	ENST00000245479.2:c.1044del	p.Gln348HisfsTer35	p.Q348Hfs*35	ENST00000245479	NM_000346.3	348	caG/ca																																																																														
ALK	0	MSKCC	GRCh37	2	29917782	29917782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1276	258	722	0	ENST00000389048.3:c.886G>A	p.Glu296Lys	p.E296K	ENST00000389048	NM_004304.4	296	Gag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187532908	187532908	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	63	303	0	ENST00000441802.2:c.9485A>G	p.Tyr3162Cys	p.Y3162C	ENST00000441802	NM_005245.3	3162	tAc/tGc																																																																														
MLL4	0	MSKCC	GRCh37	19	36219790	36219790	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	237	928	0	ENST00000222270.7:c.4687G>A	p.Ala1563Thr	p.A1563T	ENST00000222270	NM_014727.1	1563	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	106	1180	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0014199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	175	1034	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	125	928	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891274	101891274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	90	771	2	ENST00000374994.4:c.235C>T	p.Pro79Ser	p.P79S	ENST00000374994	NM_004612.2	79	Cct/Tct																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185198217	185198217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	116	632	0	ENST00000265026.3:c.2699C>T	p.Ser900Phe	p.S900F	ENST00000265026	NM_004721.4	900	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	108	850	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
KLF4	0	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1721	519	1790	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																																																														
MGA	0	MSKCC	GRCh37	15	42041855	42041855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	171	622	0	ENST00000219905.7:c.6050C>T	p.Ser2017Leu	p.S2017L	ENST00000219905	NM_001164273.1	2017	tCa/tTa																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164664	36164665	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1447	332	1137	0	ENST00000300305.3:c.1210_1211insT	p.His404LeufsTer196	p.H404Lfs*196	ENST00000300305		404	cac/cTac																																																																														
PARK2	0	MSKCC	GRCh37	6	162394333	162394333	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0014200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	31	321	0	ENST00000366898.1:c.734+1del		p.X245_splice	ENST00000366898	NM_004562.2	245																																																																															
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1844	200	1400	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																														
CDH1	0	MSKCC	GRCh37	16	68845624	68845632	+	inframe_deletion	In_Frame_Del	DEL	CGATGATGT	CGATGATGT	-			P-0014203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	187	706	0	ENST00000261769.5:c.870_878del	p.Asp290_Val293delinsGlu	p.D290_V293delinsE	ENST00000261769	NM_004360.3	290	gaCGATGATGTg/gag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1962801	1962801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	71	503	0	ENST00000382891.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000382891	NM_133335.3	1099	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	437	1166	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																														
PARP1	0	MSKCC	GRCh37	1	226578315	226578315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	70	514	0	ENST00000366794.5:c.413G>A	p.Arg138His	p.R138H	ENST00000366794	NM_001618.3	138	cGc/cAc																																																																														
MLL2	0	MSKCC	GRCh37	12	49433291	49433291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	52	751	1	ENST00000301067.7:c.8156G>A	p.Ser2719Asn	p.S2719N	ENST00000301067	NM_003482.3	2719	aGc/aAc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127364	55127364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	77	712	0	ENST00000257290.5:c.152G>T	p.Gly51Val	p.G51V	ENST00000257290	NM_006206.4	51	gGg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175912	112175912	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201801		P-0014253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	19	250	0	ENST00000257430.4:c.4621C>T	p.Gln1541Ter	p.Q1541*	ENST00000257430	NM_000038.5	1541	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	295	527	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	267	1011	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																																																														
EP300	0	MSKCC	GRCh37	22	41537100	41537100	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	90	478	1	ENST00000263253.7:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000263253	NM_001429.3	643	Gaa/Taa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81969882	81969882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	142	693	1	ENST00000359376.3:c.2951G>A	p.Arg984His	p.R984H	ENST00000359376	NM_002661.3	984	cGc/cAc																																																																														
MTOR	0	MSKCC	GRCh37	1	11204785	11204785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	59	509	0	ENST00000361445.4:c.4792G>A	p.Glu1598Lys	p.E1598K	ENST00000361445	NM_004958.3	1598	Gag/Aag																																																																														
PGR	0	MSKCC	GRCh37	11	100999781	100999781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	216	802	1	ENST00000325455.5:c.21G>T	p.Lys7Asn	p.K7N	ENST00000325455	NM_001202474.3	7	aaG/aaT																																																																														
DIS3	0	MSKCC	GRCh37	13	73345061	73345061	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	169	453	0	ENST00000377767.4:c.1736A>G	p.Lys579Arg	p.K579R	ENST00000377767	NM_014953.3	579	aAa/aGa																																																																														
TSHR	0	MSKCC	GRCh37	14	81610687	81610687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	95	414	0	ENST00000298171.2:c.2285C>A	p.Thr762Lys	p.T762K	ENST00000298171	NM_000369.2	762	aCg/aAg																																																																														
CDK12	0	MSKCC	GRCh37	17	37676252	37676252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	81	659	0	ENST00000447079.4:c.3007C>A	p.Leu1003Ile	p.L1003I	ENST00000447079	NM_015083.1	1003	Cta/Ata																																																																														
ALK	0	MSKCC	GRCh37	2	29917851	29917851	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	327	961	0	ENST00000389048.3:c.817G>T	p.Glu273Ter	p.E273*	ENST00000389048	NM_004304.4	273	Gag/Tag																																																																														
EPAS1	0	MSKCC	GRCh37	2	46605066	46605066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	135	1152	3	ENST00000263734.3:c.1283G>A	p.Gly428Asp	p.G428D	ENST00000263734	NM_001430.4	428	gGc/gAc																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111907724	111907724	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	73	297	0	ENST00000393256.3:c.498G>T	p.Arg166Ser	p.R166S	ENST00000393256	NM_006538.4	166	agG/agT																																																																														
INPP4B	0	MSKCC	GRCh37	4	143129659	143129659	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	56	470	0	ENST00000262992.4:c.991A>T	p.Ser331Cys	p.S331C	ENST00000262992	NM_001101669.1	331	Agc/Tgc																																																																														
TSC1	0	MSKCC	GRCh37	9	135804187	135804187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	46	391	0	ENST00000298552.3:c.73G>T	p.Val25Leu	p.V25L	ENST00000298552	NM_001162426.1	25	Gtg/Ttg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	92	692	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	102	505	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	111	736	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	115	526	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
AXIN1	0	MSKCC	GRCh37	16	354414	354414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201609463		P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	248	1006	0	ENST00000262320.3:c.1144C>T	p.Arg382Cys	p.R382C	ENST00000262320	NM_003502.3	382	Cgc/Tgc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9984926	9984926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	179	925	1	ENST00000330684.3:c.1039G>A	p.Asp347Asn	p.D347N	ENST00000330684	NM_001134407.1	347	Gac/Aac																																																																														
CTCF	0	MSKCC	GRCh37	16	67650647	67650647	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	105	498	0	ENST00000264010.4:c.953-1G>C		p.X318_splice	ENST00000264010	NM_006565.3	318																																																																															
PRKAR1A	0	MSKCC	GRCh37	17	66519039	66519039	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	145	597	0	ENST00000358598.2:c.320A>T	p.Glu107Val	p.E107V	ENST00000358598	NM_212471.2	107	gAg/gTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117943	70117967	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACGCTGGGCAAGCTCTGGAGGTAG	GACGCTGGGCAAGCTCTGGAGGTAG	-			P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	83	413	0	ENST00000245479.2:c.414_431+7del		p.X138_splice	ENST00000245479	NM_000346.3	138																																																																															
FBXW7	0	MSKCC	GRCh37	4	153251883	153251883	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0014296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	90	472	0	ENST00000281708.4:c.1122+1G>C		p.X374_splice	ENST00000281708	NM_033632.3	374																																																																															
CDH1	0	MSKCC	GRCh37	16	68845616	68845620	+	frameshift_variant	Frame_Shift_Del	DEL	GACGC	GACGC	-			P-0014324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	105	654	0	ENST00000261769.5:c.863_867del	p.Asp288GlyfsTer3	p.D288Gfs*3	ENST00000261769	NM_004360.3	288	GACGCg/g																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831342	72831342	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	57	299	2	ENST00000268489.5:c.5239C>T	p.Gln1747Ter	p.Q1747*	ENST00000268489	NM_006885.3	1747	Cag/Tag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927985	+	inframe_deletion	In_Frame_Del	DEL	TGTCCA	TGTCCA	-			P-0014324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	32	258	0	ENST00000263967.3:c.1259_1264del	p.Cys420_Pro421del	p.C420_P421del	ENST00000263967	NM_006218.2	420	TGTCCA/-																																																																														
MLL3	0	MSKCC	GRCh37	7	152132815	152132815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	97	584	2	ENST00000262189.6:c.57del	p.Glu20ArgfsTer85	p.E20Rfs*85	ENST00000262189	NM_170606.2	19	ccC/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0014380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	555	855	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																														
SESN3	0	MSKCC	GRCh37	11	94910979	94910979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	105	606	0	ENST00000536441.1:c.1151A>G	p.Asn384Ser	p.N384S	ENST00000536441	NM_144665.3	384	aAt/aGt																																																																														
BRAF	0	MSKCC	GRCh37	7	140476802	140476802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014380-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	203	445	0	ENST00000288602.6:c.1604C>G	p.Ser535Cys	p.S535C	ENST00000288602	NM_004333.4	535	tCc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	33	760	1	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
TBX3	0	MSKCC	GRCh37	12	115118827	115118827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	55	457	0	ENST00000257566.3:c.514G>A	p.Val172Met	p.V172M	ENST00000257566	NM_016569.3	172	Gtg/Atg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435666	110435666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	45	501	0	ENST00000375856.3:c.2735A>G	p.Glu912Gly	p.E912G	ENST00000375856	NM_003749.2	912	gAg/gGg																																																																														
APC	0	MSKCC	GRCh37	5	112175354	112175367	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTCAGGAGCGAA	TCTTCAGGAGCGAA	-			P-0014415-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	20	182	0	ENST00000257430.4:c.4063_4076del	p.Ser1355IlefsTer15	p.S1355Ifs*15	ENST00000257430	NM_000038.5	1355	TCTTCAGGAGCGAAa/a																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64129186	64129186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	62	806	0	ENST00000334205.4:c.724G>A	p.Gly242Ser	p.G242S	ENST00000334205	NM_003942.2	242	Ggc/Agc																																																																														
ROS1	0	MSKCC	GRCh37	6	117662475	117662475	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0014425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	30	489	0	ENST00000368508.3:c.4903-1G>T		p.X1635_splice	ENST00000368508	NM_002944.2	1635																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	411	458	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	50	668	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061207	38061209	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0014431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	90	491	0	ENST00000250448.2:c.780_782del	p.Leu260_Arg261delinsPhe	p.L260_R261delinsF	ENST00000250448	NM_004496.3	260	ttGCGc/ttc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061496	38061496	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	118	311	0	ENST00000250448.2:c.493A>T	p.Ser165Cys	p.S165C	ENST00000250448	NM_004496.3	165	Agc/Tgc																																																																														
PAX5	0	MSKCC	GRCh37	9	37002698	37002698	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	100	578	0	ENST00000358127.4:c.551T>A	p.Ile184Asn	p.I184N	ENST00000358127	NM_001280556.1	184	aTc/aAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	203	423	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	161	483	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																																																														
SLX4	0	MSKCC	GRCh37	16	3642785	3642785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	52	538	1	ENST00000294008.3:c.2242G>A	p.Ala748Thr	p.A748T	ENST00000294008	NM_032444.2	748	Gcc/Acc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5245967	5245967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	80	519	1	ENST00000357368.4:c.808G>T	p.Gly270Cys	p.G270C	ENST00000357368	NM_002850.3	270	Ggc/Tgc																																																																														
TOP1	0	MSKCC	GRCh37	20	39726879	39726879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	25	173	0	ENST00000361337.2:c.877A>G	p.Ile293Val	p.I293V	ENST00000361337	NM_003286.2	293	Att/Gtt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41268797	41268797	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	28	355	0	ENST00000349496.5:c.1035G>C	p.Lys345Asn	p.K345N	ENST00000349496	NM_001904.3	345	aaG/aaC																																																																														
NPM1	0	MSKCC	GRCh37	5	170819812	170819812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	37	423	0	ENST00000296930.5:c.451G>A	p.Val151Ile	p.V151I	ENST00000296930	NM_002520.6	151	Gtt/Att																																																																														
CARD11	0	MSKCC	GRCh37	7	2957002	2957002	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	35	366	0	ENST00000396946.4:c.2625A>C	p.Glu875Asp	p.E875D	ENST00000396946	NM_032415.4	875	gaA/gaC																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508364	106508364	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	42	189	0	ENST00000359195.3:c.358G>C	p.Asp120His	p.D120H	ENST00000359195	NM_002649.2	120	Gac/Cac																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538819	23538819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	58	257	0	ENST00000380871.4:c.620G>T	p.Arg207Leu	p.R207L	ENST00000380871	NM_006167.3	207	cGg/cTg																																																																														
BTK	0	MSKCC	GRCh37	X	100617175	100617175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	74	444	0	ENST00000308731.7:c.574C>A	p.Pro192Thr	p.P192T	ENST00000308731	NM_000061.2	192	Cct/Act																																																																														
PTEN	0	MSKCC	GRCh37	10	89692805	89692805	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	50	298	0	ENST00000371953.3:c.289C>T	p.Gln97Ter	p.Q97*	ENST00000371953	NM_000314.4	97	Cag/Tag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	25	286	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916644	178916644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	41	344	2	ENST00000263967.3:c.31T>C	p.Trp11Arg	p.W11R	ENST00000263967	NM_006218.2	11	Tgg/Cgg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952052	178952052	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	42	370	0	ENST00000263967.3:c.3107T>C	p.Leu1036Ser	p.L1036S	ENST00000263967	NM_006218.2	1036	tTg/tCg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0014474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	533	539	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	229	423	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	277	538	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg																																																																														
MSH3	0	MSKCC	GRCh37	5	79950776	79950776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	33	193	0	ENST00000265081.6:c.230C>A	p.Pro77Gln	p.P77Q	ENST00000265081	NM_002439.4	77	cCg/cAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692830	89692830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	28	181	0	ENST00000371953.3:c.314G>A	p.Cys105Tyr	p.C105Y	ENST00000371953	NM_000314.4	105	tGt/tAt																																																																														
CDH1	0	MSKCC	GRCh37	16	68772299	68772321	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCGTCCTGGGCAGAGGTGAGGG	CGCGTCCTGGGCAGAGGTGAGGG	-			P-0014484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	111	650	0	ENST00000261769.5:c.152_163+11del		p.X51_splice	ENST00000261769	NM_004360.3	51																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	30	444	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	161	440	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	137	287	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971096	21971097	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	155	397	0	ENST00000304494.5:c.261_262delinsAA	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	87	cgGGag/cgAAag																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971096	21971097	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	155	397	0	ENST00000304494.5:c.261_262delinsAA	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	87	cgGGag/cgAAag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971096	21971097	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	155	397	0	ENST00000304494.5:c.261_262delinsAA	p.Glu88Lys	p.E88K	ENST00000304494	NM_000077.4	87	cgGGag/cgAAag																																																																														
RECQL	0	MSKCC	GRCh37	12	21636396	21636396	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	116	651	0	ENST00000421138.2:c.614A>G	p.Glu205Gly	p.E205G	ENST00000421138		205	gAg/gGg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32166772	32166772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	209	606	0	ENST00000375023.3:c.4466G>A	p.Arg1489Gln	p.R1489Q	ENST00000375023	NM_004557.3	1489	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	96	465	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FLT1	0	MSKCC	GRCh37	13	28964199	28964199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	70	286	0	ENST00000282397.4:c.1703C>T	p.Thr568Met	p.T568M	ENST00000282397	NM_002019.4	568	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578386	7578387	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGCT			P-0014512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	88	421	0	ENST00000269305.4:c.539_543dup	p.Cys182SerfsTer67	p.C182Sfs*67	ENST00000269305	NM_001126112.2	181	-/AGCGC																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7984290	7984290	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	104	518	1	ENST00000319144.4:c.439C>T	p.Arg147Ter	p.R147*	ENST00000319144	NM_001139.2	147	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	63	430	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
RFWD2	0	MSKCC	GRCh37	1	175956089	175956089	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	120	346	0	ENST00000367669.3:c.2123T>C	p.Leu708Pro	p.L708P	ENST00000367669	NM_022457.5	708	cTa/cCa																																																																														
TP53	0	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	1046	710	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	266	248	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509447	106509447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	426	338	0	ENST00000359195.3:c.1441G>A	p.Val481Ile	p.V481I	ENST00000359195	NM_002649.2	481	Gtc/Atc																																																																														
BCOR	0	MSKCC	GRCh37	X	39921468	39921468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	57	462	0	ENST00000378444.4:c.4352C>T	p.Pro1451Leu	p.P1451L	ENST00000378444	NM_001123385.1	1451	cCg/cTg																																																																														
CBL	0	MSKCC	GRCh37	11	119146799	119146799	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	195	318	0	ENST00000264033.4:c.962A>G	p.Asn321Ser	p.N321S	ENST00000264033	NM_005188.3	321	aAt/aGt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99465574	99465574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	233	332	2	ENST00000268035.6:c.2399G>A	p.Arg800His	p.R800H	ENST00000268035	NM_000875.3	800	cGc/cAc																																																																														
AXIN1	0	MSKCC	GRCh37	16	396839	396839	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145608130		P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	161	405	0	ENST00000262320.3:c.187C>T	p.Arg63Cys	p.R63C	ENST00000262320	NM_003502.3	63	Cgc/Tgc																																																																														
ALK	0	MSKCC	GRCh37	2	29754937	29754937	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	210	348	0	ENST00000389048.3:c.998T>A	p.Ile333Asn	p.I333N	ENST00000389048	NM_004304.4	333	aTc/aAc																																																																														
TEK	0	MSKCC	GRCh37	9	27169625	27169625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	477	372	1	ENST00000380036.4:c.626G>A	p.Arg209Gln	p.R209Q	ENST00000380036	NM_000459.3	209	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	186	727	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175539	112175539	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	73	354	0	ENST00000257430.4:c.4248del	p.Ile1417LeufsTer2	p.I1417Lfs*2	ENST00000257430	NM_000038.5	1416	ggC/gg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	89	475	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913080	32913080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	104	526	0	ENST00000380152.3:c.4588A>G	p.Lys1530Glu	p.K1530E	ENST00000380152		1530	Aaa/Gaa																																																																														
SLX4	0	MSKCC	GRCh37	16	3646198	3646198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	100	621	0	ENST00000294008.3:c.1880C>T	p.Pro627Leu	p.P627L	ENST00000294008	NM_032444.2	627	cCg/cTg																																																																														
TET2	0	MSKCC	GRCh37	4	106190905	106190906	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	38	264	0	ENST00000380013.4:c.4182+2dup		p.X1394_splice	ENST00000380013	NM_001127208.2	1394																																																																															
IKZF1	0	MSKCC	GRCh37	7	50444489	50444489	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014565-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	23	212	0	ENST00000331340.3:c.419C>A	p.Thr140Asn	p.T140N	ENST00000331340	NM_006060.4	140	aCt/aAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	252	500	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	128	668	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741545	17741546	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0014572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	50	431	1	ENST00000250003.3:c.216_217delinsAA	p.Pro73Thr	p.P73T	ENST00000250003	NM_002478.4	72	gcCCcg/gcAAcg																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134378	41134378	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	77	367	0	ENST00000379561.5:c.1250C>G	p.Pro417Arg	p.P417R	ENST00000379561	NM_002015.3	417	cCc/cGc																																																																														
PMS1	0	MSKCC	GRCh37	2	190719287	190719287	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	22	205	0	ENST00000441310.2:c.1289A>G	p.Lys430Arg	p.K430R	ENST00000441310	NM_000534.4	430	aAa/aGa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188806	32188807	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0014572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	56	564	1	ENST00000375023.3:c.747_748delinsAA	p.Cys249_Gln250delinsTer	p.C249_Q250delins*	ENST00000375023	NM_004557.3	249	tgCCag/tgAAag																																																																														
TP53	0	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	510	777	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463248	25463248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	37	455	0	ENST00000264709.3:c.2245C>T	p.Arg749Cys	p.R749C	ENST00000264709	NM_175629.2	749	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	79	649	2	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	74	477	2	ENST00000322088.6:c.767C>A	p.Ser256Tyr	p.S256Y	ENST00000322088	NM_014225.5	256	tCc/tAc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274814	123274816	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0014582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	34	392	0	ENST00000358487.5:c.1102_1104del	p.Glu368del	p.E368del	ENST00000358487	NM_000141.4	368	GAG/-																																																																														
FLT3	0	MSKCC	GRCh37	13	28622441	28622441	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	30	413	0	ENST00000241453.7:c.1176T>G	p.Cys392Trp	p.C392W	ENST00000241453	NM_004119.2	392	tgT/tgG																																																																														
PRKD1	0	MSKCC	GRCh37	14	30068966	30068966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	34	541	1	ENST00000331968.5:c.1963G>T	p.Val655Leu	p.V655L	ENST00000331968	NM_002742.2	655	Gtg/Ttg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991726	72991730	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCG	CGCCG	-			P-0014582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	17	231	0	ENST00000268489.5:c.2315_2319del	p.Ala772GlyfsTer15	p.A772Gfs*15	ENST00000268489	NM_006885.3	772	gCGGCG/g																																																																														
KDR	0	MSKCC	GRCh37	4	55961086	55961086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs13129474		P-0014582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	57	616	1	ENST00000263923.4:c.2854G>A	p.Val952Ile	p.V952I	ENST00000263923	NM_002253.2	952	Gtt/Att																																																																														
FAT1	0	MSKCC	GRCh37	4	187519233	187519233	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014582-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	32	471	0	ENST00000441802.2:c.12150G>C	p.Glu4050Asp	p.E4050D	ENST00000441802	NM_005245.3	4050	gaG/gaC																																																																														
PTEN	0	MSKCC	GRCh37	10	89624297	89624297	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	314	762	0	ENST00000371953.3:c.71A>T	p.Asp24Val	p.D24V	ENST00000371953	NM_000314.4	24	gAc/gTc																																																																														
RB1	0	MSKCC	GRCh37	13	48921999	48921999	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0014613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	175	422	0	ENST00000267163.4:c.539C>A	p.Ser180Ter	p.S180*	ENST00000267163	NM_000321.2	180	tCg/tAg																																																																														
FLCN	0	MSKCC	GRCh37	17	17127259	17127259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	227	670	0	ENST00000285071.4:c.595G>A	p.Glu199Lys	p.E199K	ENST00000285071	NM_144997.5	199	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	194	719	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	386	869	11	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	69	599	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
TSC1	0	MSKCC	GRCh37	9	135772951	135772951	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	132	631	0	ENST00000298552.3:c.2672del	p.Asn891ThrfsTer40	p.N891Tfs*40	ENST00000298552	NM_001162426.1	891	aAc/ac																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32181929	32181929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	192	1069	0	ENST00000375023.3:c.2125del	p.Gln709SerfsTer22	p.Q709Sfs*22	ENST00000375023	NM_004557.3	709	Cag/ag																																																																														
CDC73	0	MSKCC	GRCh37	1	193107258	193107258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	103	473	0	ENST00000367435.3:c.467G>A	p.Arg156His	p.R156H	ENST00000367435	NM_024529.4	156	cGt/cAt																																																																														
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	244	812	6	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	334	677	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
PARK2	0	MSKCC	GRCh37	6	161969968	161969968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	216	855	2	ENST00000366898.1:c.1001G>A	p.Arg334His	p.R334H	ENST00000366898	NM_004562.2	334	cGc/cAc																																																																														
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	143	650	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	271	876	3	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
CARD11	0	MSKCC	GRCh37	7	2962854	2962854	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	201	1140	3	ENST00000396946.4:c.2054delG	p.Gly685AlafsTer31	p.G685Afs*31	ENST00000396946	NM_032415.4	685	gGc/gc																																																																														
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	265	1190	10	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152104	11152104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	225	982	0	ENST00000344626.4:c.4292G>A	p.Arg1431His	p.R1431H	ENST00000344626	NM_003072.3	1431	cGc/cAc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984672	11984672	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	114	488	0	ENST00000353533.5:c.219-1G>C		p.X73_splice	ENST00000353533	NM_003010.3	73																																																																															
RPS6KA4	0	MSKCC	GRCh37	11	64132907	64132907	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	234	1080	2	ENST00000334205.4:c.1046delC	p.Pro349HisfsTer26	p.P349Hfs*26	ENST00000334205	NM_003942.2	347	agC/ag																																																																														
RET	0	MSKCC	GRCh37	10	43601840	43601840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	165	748	0	ENST00000355710.3:c.884C>T	p.Thr295Met	p.T295M	ENST00000355710	NM_020975.4	295	aCg/aTg																																																																														
MEN1	0	MSKCC	GRCh37	11	64572113	64572113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	206	857	2	ENST00000337652.1:c.1541G>A	p.Gly514Asp	p.G514D	ENST00000337652	NM_130803.2	514	gGt/gAt																																																																														
MLL2	0	MSKCC	GRCh37	12	49424138	49424138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200638996		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	257	1230	2	ENST00000301067.7:c.13924G>A	p.Val4642Ile	p.V4642I	ENST00000301067	NM_003482.3	4642	Gtc/Atc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514790	103514790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	141	584	0	ENST00000355739.4:c.1291G>T	p.Gly431Ter	p.G431*	ENST00000355739	NM_000123.3	431	Gga/Tga																																																																														
B2M	0	MSKCC	GRCh37	15	45007794	45007797	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	62	578	0	ENST00000558401.1:c.244_247del	p.Phe82IlefsTer20	p.F82Ifs*20	ENST00000558401	NM_004048.2	81	TCTTtc/tc																																																																														
TSC2	0	MSKCC	GRCh37	16	2129065	2129066	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	86	880	0	ENST00000219476.3:c.3003dup	p.Ser1002ValfsTer4	p.S1002Vfs*4	ENST00000219476	NM_000548.3	1000	ttg/ttGg																																																																														
FLCN	0	MSKCC	GRCh37	17	17129567	17129567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	281	1179	3	ENST00000285071.4:c.319G>A	p.Val107Ile	p.V107I	ENST00000285071	NM_144997.5	107	Gtc/Atc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880988	37880988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	184	971	0	ENST00000269571.5:c.2317G>A	p.Val773Met	p.V773M	ENST00000269571		773	Gtg/Atg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288765	15288765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	102	263	1	ENST00000263388.2:c.3974G>A	p.Arg1325His	p.R1325H	ENST00000263388	NM_000435.2	1325	cGc/cAc																																																																														
MLL4	0	MSKCC	GRCh37	19	36210420	36210420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	209	789	1	ENST00000222270.7:c.413G>A	p.Arg138His	p.R138H	ENST00000222270	NM_014727.1	138	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	289	1228	12	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																														
MYCN	0	MSKCC	GRCh37	2	16082301	16082301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	322	1409	0	ENST00000281043.3:c.115G>T	p.Gly39Cys	p.G39C	ENST00000281043	NM_005378.4	39	Ggc/Tgc																																																																														
MST1R	0	MSKCC	GRCh37	3	49933437	49933438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	217	906	0	ENST00000296474.3:c.2752dup	p.Leu918ProfsTer21	p.L918Pfs*21	ENST00000296474	NM_002447.2	918	ctg/cCtg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	225	1108	5	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
BCL6	0	MSKCC	GRCh37	3	187440292	187440292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	132	625	0	ENST00000232014.4:c.2075G>A	p.Arg692His	p.R692H	ENST00000232014	NM_001130845.1	692	cGc/cAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187541459	187541459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	147	602	0	ENST00000441802.2:c.6281C>T	p.Thr2094Ile	p.T2094I	ENST00000441802	NM_005245.3	2094	aCt/aTt																																																																														
VEGFA	0	MSKCC	GRCh37	6	43748510	43748510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	162	646	1	ENST00000523873.1:c.464G>T	p.Arg155Leu	p.R155L	ENST00000523873		155	cGc/cTc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157521975	157521975	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144424476		P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	157	655	1	ENST00000346085.5:c.4247G>A	p.Arg1416His	p.R1416H	ENST00000346085	NM_020732.3	1416	cGc/cAc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38277152	38277152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	214	1012	1	ENST00000425967.3:c.1276A>G	p.Ile426Val	p.I426V	ENST00000425967	NM_001174067.1	426	Atc/Gtc																																																																														
PAX5	0	MSKCC	GRCh37	9	37020769	37020769	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014616-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	231	994	2	ENST00000358127.4:c.76G>T	p.Val26Phe	p.V26F	ENST00000358127	NM_001280556.1	26	Gtt/Ttt																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	137	448	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	190	495	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56170991	56170991	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	68	220	0	ENST00000399503.3:c.1823del	p.Gly608AlafsTer48	p.G608Afs*48	ENST00000399503	NM_005921.1	607	Ggg/gg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	74	301	0	ENST00000349496.5:c.97T>G	p.Ser33Ala	p.S33A	ENST00000349496	NM_001904.3	33	Tct/Gct																																																																														
PTEN	0	MSKCC	GRCh37	10	89720650	89720650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	115	265	0	ENST00000371953.3:c.802-1G>A		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	107	350	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	73	613	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089592	27089593	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	221	561	0	ENST00000324856.7:c.2549dup	p.Tyr850Ter	p.Y850*	ENST00000324856	NM_006015.4	850	tat/tAat																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114903690	114903690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	259	637	0	ENST00000543371.1:c.694C>T	p.Arg232Trp	p.R232W	ENST00000543371	NM_001198531.1	232	Cgg/Tgg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061091	38061091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	16	94	0	ENST00000250448.2:c.898G>A	p.Ala300Thr	p.A300T	ENST00000250448	NM_004496.3	300	Gcc/Acc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36219940	36219941	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCA			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	238	502	0	ENST00000222270.7:c.4743_4746dup	p.Leu1583CysfsTer96	p.L1583Cfs*96	ENST00000222270	NM_014727.1	1581	tgt/tgTGCAt																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138456660	138456660	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	125	572	0	ENST00000289153.2:c.690del	p.Lys230AsnfsTer3	p.K230Nfs*3	ENST00000289153	NM_006219.2	230	aaA/aa																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	71	258	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																														
APC	0	MSKCC	GRCh37	5	112163705	112163705	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	63	238	0	ENST00000257430.4:c.1626+2T>A		p.X542_splice	ENST00000257430	NM_000038.5	542																																																																															
PTPRD	0	MSKCC	GRCh37	9	8341704	8341704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	136	431	0	ENST00000356435.5:c.4936C>T	p.Leu1646Phe	p.L1646F	ENST00000356435		1646	Ctc/Ttc																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	221	478	0	ENST00000378444.4:c.4376A>C	p.Asn1459Thr	p.N1459T	ENST00000378444	NM_001123385.1	1459	aAt/aCt																																																																														
RB1	5925	MSKCC	GRCh37	13	48937041	48937045	+	frameshift_variant	Frame_Shift_Del	DEL	ATACA	ATACA	TAT			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	139	428	0	ENST00000267163.4:c.809_813delinsTAT	p.Asp270ValfsTer2	p.D270Vfs*2	ENST00000267163	NM_000321.2	270	gATACA/gTAT																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589295	67589339	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGT	TATCCAAATACCAACAGGTAATAAAAACTGAATGAATTATCCAGT	CAAA			P-0014669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	60	256	2	ENST00000274335.5:c.1283_1299+28delinsCAAA		p.X428_splice	ENST00000274335		428																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0014682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	39	729	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			561	691	563	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
RB1	0	MSKCC	GRCh37	13	48955432	48955432	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			137	543	463	0	ENST00000267163.4:c.1548G>A	p.Trp516Ter	p.W516*	ENST00000267163	NM_000321.2	516	tgG/tgA																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031815	10031815	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0014696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1340	242	515	2	ENST00000330684.3:c.1007+1G>A		p.X336_splice	ENST00000330684	NM_001134407.1	336																																																																															
CHEK2	0	MSKCC	GRCh37	22	29090030	29090030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			35	23	111	7	ENST00000328354.6:c.1451C>T	p.Pro484Leu	p.P484L	ENST00000328354	NM_007194.3	484	cCg/cTg																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778042	27778042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	424	498	0	ENST00000369163.2:c.191G>A	p.Arg64Lys	p.R64K	ENST00000369163	NM_003536.2	64	aGa/aAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	119	279	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0014699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	69	384	0	ENST00000250448.2:c.754_774delAACATGTTCGAGAACGGCTGC	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																														
CDH1	0	MSKCC	GRCh37	16	68857509	68857510	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0014699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	109	280	0	ENST00000261769.5:c.2145_2146del	p.Gly716AsnfsTer31	p.G716Nfs*31	ENST00000261769	NM_004360.3	715	gGA/g																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508342	106508342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	55	218	0	ENST00000359195.3:c.336G>C	p.Lys112Asn	p.K112N	ENST00000359195	NM_002649.2	112	aaG/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	27	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	64	711	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	33	458	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	75	381	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	96	270	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
GATA3	0	MSKCC	GRCh37	10	8111467	8111468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	120	359	0	ENST00000346208.3:c.954dup	p.Asn319GlufsTer33	p.N319Efs*33	ENST00000346208		318	gcg/gcGg																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870996	12870996	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	51	280	2	ENST00000228872.4:c.223G>T	p.Glu75Ter	p.E75*	ENST00000228872	NM_004064.3	75	Gag/Tag																																																																														
RUNX1	0	MSKCC	GRCh37	21	36171747	36171757	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATCTGCCTTGT	ATCTGCCTTGT	-			P-0014737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	73	223	0	ENST00000300305.3:c.808_818del	p.Thr270ProfsTer326	p.T270Pfs*326	ENST00000300305		270	ACAAGGCAGATc/c																																																																														
GATA3	0	MSKCC	GRCh37	10	8115903	8115904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	125	474	0	ENST00000346208.3:c.1251dupC	p.Thr418HisfsTer89	p.T418Hfs*89	ENST00000346208		417	acc/aCcc																																																																														
AXIN1	0	MSKCC	GRCh37	16	396468	396468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	88	766	0	ENST00000262320.3:c.558G>C	p.Gln186His	p.Q186H	ENST00000262320	NM_003502.3	186	caG/caC																																																																														
AXIN1	0	MSKCC	GRCh37	16	396575	396575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	66	616	1	ENST00000262320.3:c.451G>C	p.Asp151His	p.D151H	ENST00000262320	NM_003502.3	151	Gat/Cat																																																																														
PBRM1	0	MSKCC	GRCh37	3	52678747	52678747	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	54	576	0	ENST00000394830.3:c.872A>G	p.Glu291Gly	p.E291G	ENST00000394830	NM_018313.4	291	gAa/gGa																																																																														
FAT1	0	MSKCC	GRCh37	4	187527259	187527259	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201982861		P-0014763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	41	521	2	ENST00000441802.2:c.10315G>A	p.Val3439Ile	p.V3439I	ENST00000441802	NM_005245.3	3439	Gtc/Atc																																																																														
MTOR	0	MSKCC	GRCh37	1	11217299	11217299	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	212	618	0	ENST00000361445.4:c.4379T>C	p.Leu1460Pro	p.L1460P	ENST00000361445	NM_004958.3	1460	cTt/cCt																																																																														
POLD1	0	MSKCC	GRCh37	19	50905498	50905498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1078	231	762	0	ENST00000440232.2:c.626T>C	p.Phe209Ser	p.F209S	ENST00000440232	NM_002691.3	209	tTc/tCc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29130597	29130598	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCC			P-0014767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	118	407	0	ENST00000328354.6:c.109_112dup	p.Ile38ArgfsTer40	p.I38Rfs*40	ENST00000328354	NM_007194.3	38	ata/aGGCAta																																																																														
BAP1	0	MSKCC	GRCh37	3	52443626	52443626	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0014767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	143	408	0	ENST00000460680.1:c.68-2A>G		p.X23_splice	ENST00000460680	NM_004656.3	23																																																																															
APC	0	MSKCC	GRCh37	5	112175361	112175361	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	64	209	0	ENST00000257430.4:c.4070G>C	p.Gly1357Ala	p.G1357A	ENST00000257430	NM_000038.5	1357	gGa/gCa																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839775	27839775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	118	424	0	ENST00000328488.2:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000328488	NM_003533.2	107	Gat/Tat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	245	478	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	75	471	0				ENST00000310581	NM_198253.2																																																																																
MAPK1	0	MSKCC	GRCh37	22	22162113	22162113	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014770-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	220	352	0	ENST00000215832.6:c.142A>G	p.Lys48Glu	p.K48E	ENST00000215832	NM_002745.4	48	Aaa/Gaa																																																																														
MGA	0	MSKCC	GRCh37	15	42042162	42042163	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	22	553	1	ENST00000219905.7:c.6360dup	p.Asp2121Ter	p.D2121*	ENST00000219905	NM_001164273.1	2119	-/T																																																																														
NF1	0	MSKCC	GRCh37	17	29527503	29527503	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	18	427	0	ENST00000358273.4:c.952G>T	p.Glu318Ter	p.E318*	ENST00000358273	NM_001042492.2	318	Gaa/Taa																																																																														
NF1	0	MSKCC	GRCh37	17	29665760	29665763	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0014777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	18	403	0	ENST00000358273.4:c.6860_6863del	p.Ser2287LysfsTer3	p.S2287Kfs*3	ENST00000358273	NM_001042492.2	2286	aaCAGT/aa																																																																														
POLD1	0	MSKCC	GRCh37	19	50906658	50906771	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAGGGGTGGCTGGGGTTCTAGAACATTCTGGAAGTAGGGGAATCCGAGGCAGGGCAACCACCAGGGTGACCCAATGTGCTCCCACCCCCAGGCCTGGTCCACCTTCATCCGTA	TCAGGGGTGGCTGGGGTTCTAGAACATTCTGGAAGTAGGGGAATCCGAGGCAGGGCAACCACCAGGGTGACCCAATGTGCTCCCACCCCCAGGCCTGGTCCACCTTCATCCGTA	-			P-0014777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	11	182	0	ENST00000440232.2:c.1138-89_1162del		p.X380_splice	ENST00000440232	NM_002691.3	380																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	188	506	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0014815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	466	655	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974730	21974730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	181	316	0	ENST00000304494.5:c.97G>T	p.Glu33Ter	p.E33*	ENST00000304494	NM_000077.4	33	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974730	21974730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	181	316	0	ENST00000304494.5:c.97G>T	p.Glu33Ter	p.E33*	ENST00000304494	NM_000077.4	33	Gag/Tag																																																																														
ELF3	1999	MSKCC	GRCh37	1	201981167	201981168	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	512	843	0	ENST00000359651.3:c.248dup	p.Asn83LysfsTer9	p.N83Kfs*9	ENST00000359651		82	-/A																																																																														
CD274	0	MSKCC	GRCh37	9	5463082	5463082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	117	285	0	ENST00000381577.3:c.643G>C	p.Asp215His	p.D215H	ENST00000381577	NM_014143.3	215	Gat/Cat																																																																														
TSC1	0	MSKCC	GRCh37	9	135781092	135781092	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014815-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	320	545	0	ENST00000298552.3:c.1873G>T	p.Glu625Ter	p.E625*	ENST00000298552	NM_001162426.1	625	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	136	520	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	324	415	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911593	114911593	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	331	519	0	ENST00000543371.1:c.1111G>C	p.Glu371Gln	p.E371Q	ENST00000543371	NM_001198531.1	371	Gag/Cag																																																																														
SDHC	0	MSKCC	GRCh37	1	161293455	161293455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	196	295	0	ENST00000367975.2:c.72C>G	p.Ile24Met	p.I24M	ENST00000367975	NM_003001.3	24	atC/atG																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739115	40739115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	281	398	0	ENST00000373198.4:c.3169G>A	p.Glu1057Lys	p.E1057K	ENST00000373198	NM_133170.3	1057	Gag/Aag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907092	32907092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	113	316	0	ENST00000380152.3:c.1477C>T	p.Pro493Ser	p.P493S	ENST00000380152		493	Cca/Tca																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244094	41244094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	138	459	0	ENST00000357654.3:c.3454G>A	p.Asp1152Asn	p.D1152N	ENST00000357654	NM_007294.3	1152	Gac/Aac																																																																														
CDC42	0	MSKCC	GRCh37	1	22413244	22413244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	25	37	0	ENST00000344548.3:c.371C>T	p.Ser124Phe	p.S124F	ENST00000344548	NM_001039802.1	124	tCt/tTt																																																																														
ELF3	0	MSKCC	GRCh37	1	201982319	201982319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1354	154	638	0	ENST00000359651.3:c.698G>C	p.Arg233Pro	p.R233P	ENST00000359651		233	cGt/cCt																																																																														
ELF3	0	MSKCC	GRCh37	1	201982361	201982361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1585	179	766	0	ENST00000359651.3:c.740G>A	p.Arg247Gln	p.R247Q	ENST00000359651		247	cGa/cAa																																																																														
MLL2	0	MSKCC	GRCh37	12	49420471	49420471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	135	470	0	ENST00000301067.7:c.15278C>T	p.Ser5093Phe	p.S5093F	ENST00000301067	NM_003482.3	5093	tCc/tTc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103519096	103519096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	136	431	0	ENST00000355739.4:c.2434G>A	p.Asp812Asn	p.D812N	ENST00000355739	NM_000123.3	812	Gat/Aat																																																																														
ERCC5	0	MSKCC	GRCh37	13	103519159	103519159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	106	352	0	ENST00000355739.4:c.2497G>C	p.Glu833Gln	p.E833Q	ENST00000355739	NM_000123.3	833	Gaa/Caa																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748206	43748206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	234	510	0	ENST00000382044.4:c.2600C>T	p.Ser867Leu	p.S867L	ENST00000382044	NM_001141980.1	867	tCa/tTa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3820641	3820641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1313	437	668	2	ENST00000262367.5:c.2810C>T	p.Pro937Leu	p.P937L	ENST00000262367	NM_004380.2	937	cCg/cTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9927969	9927969	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	106	330	0	ENST00000330684.3:c.1770del	p.Ala593HisfsTer61	p.A593Hfs*61	ENST00000330684	NM_001134407.1	590	aaA/aa																																																																														
NF1	0	MSKCC	GRCh37	17	29483087	29483087	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	291	443	0	ENST00000358273.4:c.147C>G	p.Tyr49Ter	p.Y49*	ENST00000358273	NM_001042492.2	49	taC/taG																																																																														
STK11	0	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	368	593	2	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602869	10602869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	546	747	0	ENST00000171111.5:c.709C>G	p.Leu237Val	p.L237V	ENST00000171111	NM_203500.1	237	Ctg/Gtg																																																																														
BARD1	0	MSKCC	GRCh37	2	215646222	215646222	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	36	194	0	ENST00000260947.4:c.376G>C	p.Asp126His	p.D126H	ENST00000260947	NM_000465.2	126	Gat/Cat																																																																														
PAK7	0	MSKCC	GRCh37	20	9523357	9523357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	117	406	0	ENST00000353224.5:c.1880G>T	p.Trp627Leu	p.W627L	ENST00000353224	NM_177990.2	627	tGg/tTg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920326	134920326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	90	351	0	ENST00000398015.3:c.2141G>T	p.Gly714Val	p.G714V	ENST00000398015	NM_004441.4	714	gGg/gTg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185198222	185198222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	161	399	3	ENST00000265026.3:c.2704C>T	p.His902Tyr	p.H902Y	ENST00000265026	NM_004721.4	902	Cac/Tac																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332577	153332577	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	101	313	0	ENST00000281708.4:c.379C>T	p.Gln127Ter	p.Q127*	ENST00000281708	NM_033632.3	127	Cag/Tag																																																																														
FAT1	0	MSKCC	GRCh37	4	187517903	187517903	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	121	366	0	ENST00000441802.2:c.12791C>G	p.Ser4264Ter	p.S4264*	ENST00000441802	NM_005245.3	4264	tCa/tGa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160720	56160720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	94	325	0	ENST00000399503.3:c.994G>A	p.Asp332Asn	p.D332N	ENST00000399503	NM_005921.1	332	Gac/Aac																																																																														
PLK2	0	MSKCC	GRCh37	5	57751159	57751159	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	99	242	0	ENST00000274289.3:c.1708A>T	p.Thr570Ser	p.T570S	ENST00000274289	NM_006622.3	570	Acg/Tcg																																																																														
FYN	0	MSKCC	GRCh37	6	112041017	112041017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	171	257	0	ENST00000368678.4:c.238G>A	p.Gly80Arg	p.G80R	ENST00000368678		80	Gga/Aga																																																																														
LATS1	0	MSKCC	GRCh37	6	150004922	150004922	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	133	298	0	ENST00000253339.5:c.1303C>G	p.Gln435Glu	p.Q435E	ENST00000253339		435	Cag/Gag																																																																														
ESR1	0	MSKCC	GRCh37	6	152382242	152382242	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	228	324	0	ENST00000206249.3:c.1352T>G	p.Ile451Ser	p.I451S	ENST00000206249	NM_000125.3	451	aTt/aGt																																																																														
BRAF	0	MSKCC	GRCh37	7	140481397	140481397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	109	315	0	ENST00000288602.6:c.1411G>T	p.Val471Phe	p.V471F	ENST00000288602	NM_004333.4	471	Gtc/Ttc																																																																														
TRAF2	0	MSKCC	GRCh37	9	139815600	139815600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	285	522	0	ENST00000247668.2:c.1071G>T	p.Lys357Asn	p.K357N	ENST00000247668	NM_021138.3	357	aaG/aaT																																																																														
PMS1	0	MSKCC	GRCh37	2	190728625	190728639	+	frameshift_variant	Frame_Shift_Del	DEL	ATTATCTAATCAACC	ATTATCTAATCAACC	G			P-0014818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	145	423	0	ENST00000441310.2:c.2013_2027delinsG	p.Leu672LysfsTer3	p.L672Kfs*3	ENST00000441310	NM_000534.4	671	tcATTATCTAATCAACCa/tcGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	411	512	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458147	120458147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	371	493	0	ENST00000256646.2:c.7198C>T	p.Arg2400Ter	p.R2400*	ENST00000256646	NM_024408.3	2400	Cga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	48881509	48881509	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	240	284	0	ENST00000267163.4:c.232del	p.Trp78GlyfsTer33	p.W78Gfs*33	ENST00000267163	NM_000321.2	77	acT/ac																																																																														
SMO	0	MSKCC	GRCh37	7	128843302	128843302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1599	500	681	0	ENST00000249373.3:c.409G>C	p.Asp137His	p.D137H	ENST00000249373	NM_005631.4	137	Gac/Cac																																																																														
CRLF2	0	MSKCC	GRCh37	X	1317451	1317451	+	downstream_gene_variant	3'Flank	SNP	T	T	C			P-0014821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1490	494	568	0				ENST00000381566																																																																																	
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	64	393	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
MLL3	0	MSKCC	GRCh37	7	151900060	151900060	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	56	283	0	ENST00000262189.6:c.4051delA	p.Arg1351GlyfsTer23	p.R1351Gfs*23	ENST00000262189	NM_170606.2	1351	Agg/gg																																																																														
MLL3	0	MSKCC	GRCh37	7	151845959	151845959	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	72	468	2	ENST00000262189.6:c.13053delA	p.Lys4351AsnfsTer5	p.K4351Nfs*5	ENST00000262189	NM_170606.2	4351	aaA/aa																																																																														
RB1	0	MSKCC	GRCh37	13	48941629	48941629	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	18	122	0	ENST00000267163.4:c.940-1G>T		p.X314_splice	ENST00000267163	NM_000321.2	314																																																																															
CSDE1	0	MSKCC	GRCh37	1	115267956	115267956	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	67	383	0	ENST00000438362.2:c.1779-2A>G		p.X593_splice	ENST00000438362	NM_001242891.1	593																																																																															
CSDE1	0	MSKCC	GRCh37	1	115268841	115268841	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	175	393	0	ENST00000438362.2:c.1769del	p.Phe590SerfsTer36	p.F590Sfs*36	ENST00000438362	NM_001242891.1	590	tTc/tc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56494960	56494960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	72	422	0	ENST00000267101.3:c.3317C>T	p.Ala1106Val	p.A1106V	ENST00000267101	NM_001982.3	1106	gCt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579533	7579534	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCAA			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	236	643	0	ENST00000269305.4:c.149_153dup	p.Gln52LeufsTer73	p.Q52Lfs*73	ENST00000269305	NM_001126112.2	51	-/TTGAA																																																																														
AXIN2	0	MSKCC	GRCh37	17	63534449	63534449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	91	581	0	ENST00000307078.5:c.1072C>A	p.Leu358Met	p.L358M	ENST00000307078	NM_004655.3	358	Ctg/Atg																																																																														
UPF1	5976	MSKCC	GRCh37	19	18958620	18958620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	75	565	3	ENST00000262803.5:c.439G>A	p.Gly147Arg	p.G147R	ENST00000262803	NM_002911.3	147	Gga/Aga																																																																														
EPCAM	0	MSKCC	GRCh37	2	47600641	47600641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	76	486	0	ENST00000263735.4:c.116T>C	p.Phe39Ser	p.F39S	ENST00000263735	NM_002354.2	39	tTt/tCt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212543874	212543874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	114	457	0	ENST00000342788.4:c.1525A>G	p.Ser509Gly	p.S509G	ENST00000342788	NM_005235.2	509	Agt/Ggt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52582243	52582243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	58	153	0	ENST00000394830.3:c.4585C>T	p.Arg1529Cys	p.R1529C	ENST00000394830	NM_018313.4	1529	Cgc/Tgc																																																																														
TERT	0	MSKCC	GRCh37	5	1294998	1294998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	24	81	1	ENST00000310581.5:c.107G>A	p.Trp36Ter	p.W36*	ENST00000310581	NM_198253.2	36	tGg/tAg																																																																														
IL7R	0	MSKCC	GRCh37	5	35876394	35876394	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1264	131	500	0	ENST00000303115.3:c.1186A>G	p.Asn396Asp	p.N396D	ENST00000303115	NM_002185.3	396	Aat/Gat																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177930	56177930	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	131	428	0	ENST00000399503.3:c.2903A>G	p.Asn968Ser	p.N968S	ENST00000399503	NM_005921.1	968	aAc/aGc																																																																														
FLT4	0	MSKCC	GRCh37	5	180053239	180053239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	58	602	1	ENST00000261937.6:c.1130G>A	p.Gly377Glu	p.G377E	ENST00000261937	NM_182925.4	377	gGg/gAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76855024	76855024	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	52	406	0	ENST00000373344.5:c.5812A>G	p.Lys1938Glu	p.K1938E	ENST00000373344	NM_000489.3	1938	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0014841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	356	785	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	121	603	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	118	715	1	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
APC	324	MSKCC	GRCh37	5	112175351	112175352	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	158	346	0	ENST00000257430.4:c.4062_4063del	p.Ser1355PhefsTer19	p.S1355Ffs*19	ENST00000257430	NM_000038.5	1354	TTt/t																																																																														
MTOR	0	MSKCC	GRCh37	1	11259397	11259397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	111	636	0	ENST00000361445.4:c.4171C>G	p.Arg1391Gly	p.R1391G	ENST00000361445	NM_004958.3	1391	Cga/Gga																																																																														
SMYD3	0	MSKCC	GRCh37	1	246078928	246078928	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	193	538	0	ENST00000388985.4:c.717C>G	p.Tyr239Ter	p.Y239*	ENST00000388985		239	taC/taG																																																																														
SMAD3	0	MSKCC	GRCh37	15	67459114	67459114	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	G			P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	371	805	0	ENST00000327367.4:c.533-3C>G		p.X178_splice	ENST00000327367	NM_005902.3	178																																																																															
ASXL1	0	MSKCC	GRCh37	20	31022732	31022733	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAGATGG			P-0014858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	117	717	0	ENST00000375687.4:c.2218_2225dup	p.Leu743GlnfsTer4	p.L743Qfs*4	ENST00000375687	NM_015338.5	739	-/ACAGATGG																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	64	638	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	74	818	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0014874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	36	506	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
SLX4	0	MSKCC	GRCh37	16	3641151	3641151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	91	1374	0	ENST00000294008.3:c.2488G>C	p.Ala830Pro	p.A830P	ENST00000294008	NM_032444.2	830	Gcg/Ccg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346100	89346100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	15	121	0	ENST00000301030.4:c.6850G>A	p.Ala2284Thr	p.A2284T	ENST00000301030	NM_001256183.1	2284	Gcc/Acc																																																																														
AKT2	0	MSKCC	GRCh37	19	40743887	40743887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	73	759	0	ENST00000392038.2:c.820C>T	p.Arg274Cys	p.R274C	ENST00000392038	NM_001626.4	274	Cgc/Tgc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247354	153247354	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	93	454	0	ENST00000281708.4:c.1448T>C	p.Leu483Pro	p.L483P	ENST00000281708	NM_033632.3	483	cTt/cCt																																																																														
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	433	1012	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871656	35871656	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	146	370	1	ENST00000216797.5:c.850G>T	p.Glu284Ter	p.E284*	ENST00000216797	NM_020529.2	284	Gag/Tag																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873624	35873624	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0014894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	99	253	0	ENST00000216797.5:c.227C>G	p.Ser76Trp	p.S76W	ENST00000216797	NM_020529.2	76	tCg/tGg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37871746	37871746	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142783371		P-0014894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	825	865	0	ENST00000269571.5:c.1270G>A	p.Val424Ile	p.V424I	ENST00000269571		424	Gtc/Atc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59760788	59760788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	188	571	1	ENST00000259008.2:c.3619G>T	p.Asp1207Tyr	p.D1207Y	ENST00000259008	NM_032043.2	1207	Gat/Tat																																																																														
RICTOR	253260	MSKCC	GRCh37	5	38950756	38950756	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199854036		P-0014894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	114	326	0	ENST00000357387.3:c.3194A>G	p.Asn1065Ser	p.N1065S	ENST00000357387	NM_152756.3	1065	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	169	399	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68857317	68857317	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	138	394	0	ENST00000261769.5:c.1955delT	p.Leu652Ter	p.L652*	ENST00000261769	NM_004360.3	651	aTt/at																																																																														
MLL4	0	MSKCC	GRCh37	19	36216415	36216425	+	frameshift_variant	Frame_Shift_Del	DEL	CCCATTCTGCC	CCCATTCTGCC	GAA			P-0014965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	382	769	2	ENST00000222270.7:c.3678_3688delinsGAA	p.His1226GlnfsTer76	p.H1226Qfs*76	ENST00000222270	NM_014727.1	1226	caCCCATTCTGCCtg/caGAAtg																																																																														
AXL	0	MSKCC	GRCh37	19	41737181	41737181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	362	607	1	ENST00000301178.4:c.761C>T	p.Pro254Leu	p.P254L	ENST00000301178	NM_021913.4	254	cCc/cTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	69	412	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MYD88	0	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	37	291	1	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	46	462	0	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																																																														
KLF4	0	MSKCC	GRCh37	9	110248150	110248150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	34	410	0	ENST00000374672.4:c.1322A>G	p.Asp441Gly	p.D441G	ENST00000374672	NM_004235.4	441	gAt/gGt																																																																														
MLL2	0	MSKCC	GRCh37	12	49446493	49446493	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	43	334	0	ENST00000301067.7:c.1113-1G>A		p.X371_splice	ENST00000301067	NM_003482.3	371																																																																															
CDH1	0	MSKCC	GRCh37	16	68847285	68847285	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	73	581	1	ENST00000261769.5:c.1207del	p.Ala403ProfsTer14	p.A403Pfs*14	ENST00000261769	NM_004360.3	403	Gcc/cc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271806	15271807	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0014998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	50	690	1	ENST00000263388.2:c.6632dup	p.Tyr2211Ter	p.Y2211*	ENST00000263388	NM_000435.2	2211	tac/taAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	281	827	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
PAX5	0	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	110	790	1	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																														
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	66	299	1	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																																																														
MLL	0	MSKCC	GRCh37	11	118354910	118354910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	224	524	0	ENST00000534358.1:c.4099C>T	p.Pro1367Ser	p.P1367S	ENST00000534358	NM_005933.3	1367	Ccg/Tcg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900384	3900384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	117	714	3	ENST00000262367.5:c.712G>A	p.Val238Met	p.V238M	ENST00000262367	NM_004380.2	238	Gtg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7578474	7578498	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGGGTGTGGAATCAACCCACAGC	CGGGGGTGTGGAATCAACCCACAGC	GGGGG			P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	170	1148	5	ENST00000269305.4:c.432_456delinsCCCCC	p.Gln144HisfsTer30	p.Q144Hfs*30	ENST00000269305	NM_001126112.2	144	caGCTGTGGGTTGATTCCACACCCCCG/caCCCCC																																																																														
APC	0	MSKCC	GRCh37	5	112173283	112173284	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	69	271	0	ENST00000257430.4:c.1993_1994delTT	p.Leu665IlefsTer8	p.L665Ifs*8	ENST00000257430	NM_000038.5	664	acTTta/acta																																																																														
TP53	0	MSKCC	GRCh37	17	7578460	7578461	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	G			P-0015006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	135	933	3	ENST00000269305.4:c.469_470delinsC	p.Val157ProfsTer13	p.V157Pfs*13	ENST00000269305	NM_001126112.2	157	GTc/Cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	278	424	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	442	919	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100943	41100943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	144	545	1	ENST00000373198.4:c.1413G>A	p.Met471Ile	p.M471I	ENST00000373198	NM_133170.3	471	atG/atA																																																																														
SPEN	0	MSKCC	GRCh37	1	16263725	16263725	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	122	565	0	ENST00000375759.3:c.10094C>G	p.Pro3365Arg	p.P3365R	ENST00000375759	NM_015001.2	3365	cCt/cGt																																																																														
MLL	0	MSKCC	GRCh37	11	118374795	118374795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	74	432	0	ENST00000534358.1:c.8188G>T	p.Asp2730Tyr	p.D2730Y	ENST00000534358	NM_005933.3	2730	Gat/Tat																																																																														
ARID2	0	MSKCC	GRCh37	12	46246137	46246137	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	45	471	0	ENST00000334344.6:c.4231C>G	p.Gln1411Glu	p.Q1411E	ENST00000334344	NM_152641.2	1411	Caa/Gaa																																																																														
RAD50	0	MSKCC	GRCh37	5	131927057	131927059	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0015012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	69	471	0	ENST00000265335.6:c.1600_1602del	p.Thr534del	p.T534del	ENST00000265335		532	ACA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0015019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	257	591	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
DDR2	0	MSKCC	GRCh37	1	162737018	162737018	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0015019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	113	307	0	ENST00000367921.3:c.1163-1G>C		p.X388_splice	ENST00000367921	NM_006182.2	388																																																																															
MST1R	0	MSKCC	GRCh37	3	49933205	49933205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	164	497	1	ENST00000296474.3:c.2905G>A	p.Val969Met	p.V969M	ENST00000296474	NM_002447.2	969	Gtg/Atg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0015029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	270	718	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0015029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	113	714	1	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
FLT1	0	MSKCC	GRCh37	13	28979980	28979980	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	121	772	0	ENST00000282397.4:c.1488C>A	p.Ser496Arg	p.S496R	ENST00000282397	NM_002019.4	496	agC/agA																																																																														
RB1	5925	MSKCC	GRCh37	13	48878106	48878106	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1469887040		P-0015029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	91	352	0	ENST00000267163.4:c.62del	p.Pro21ArgfsTer44	p.P21Rfs*44	ENST00000267163	NM_000321.2	20	Ccc/cc																																																																														
APC	0	MSKCC	GRCh37	5	112173600	112173600	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	70	421	0	ENST00000257430.4:c.2309C>G	p.Ser770Ter	p.S770*	ENST00000257430	NM_000038.5	770	tCa/tGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	244	647	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
POLD1	0	MSKCC	GRCh37	19	50909695	50909695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	57	923	0	ENST00000440232.2:c.1415A>G	p.Tyr472Cys	p.Y472C	ENST00000440232	NM_002691.3	472	tAc/tGc																																																																														
SETD2	0	MSKCC	GRCh37	3	47158173	47158173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	42	653	0	ENST00000409792.3:c.4526G>C	p.Arg1509Thr	p.R1509T	ENST00000409792	NM_014159.6	1509	aGa/aCa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38962421	38962421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	50	397	0	ENST00000357387.3:c.1711C>T	p.His571Tyr	p.H571Y	ENST00000357387	NM_152756.3	571	Cac/Tac																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522053	157522053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	30	465	0	ENST00000346085.5:c.4325G>A	p.Gly1442Glu	p.G1442E	ENST00000346085	NM_020732.3	1442	gGa/gAa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	253	703	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
IKBKE	0	MSKCC	GRCh37	1	206664150	206664150	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	144	567	0	ENST00000367120.3:c.1694-2A>G		p.X565_splice	ENST00000367120	NM_014002.3	565																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178916926	178916931	+	inframe_deletion	In_Frame_Del	DEL	GTAGGC	GTAGGC	-			P-0015049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	393	527	0	ENST00000263967.3:c.313_318del	p.Val105_Gly106del	p.V105_G106del	ENST00000263967	NM_006218.2	105	GTAGGC/-																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0015052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	213	596	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	116	548	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106865	27106871	+	frameshift_variant	Frame_Shift_Del	DEL	AGAACCC	AGAACCC	-			P-0015052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	230	479	0	ENST00000324856.7:c.6476_6482del	p.Lys2159ArgfsTer39	p.K2159Rfs*39	ENST00000324856	NM_006015.4	2159	aAGAACCCg/ag																																																																														
EPAS1	0	MSKCC	GRCh37	2	46609732	46609732	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	226	493	0	ENST00000263734.3:c.2456T>C	p.Val819Ala	p.V819A	ENST00000263734	NM_001430.4	819	gTg/gCg																																																																														
RB1	0	MSKCC	GRCh37	13	48953788	48953788	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0015065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	129	181	0	ENST00000267163.4:c.1389+2T>C		p.X463_splice	ENST00000267163	NM_000321.2	463																																																																															
KIT	0	MSKCC	GRCh37	4	55593602	55593604	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0015065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	95	364	0	ENST00000288135.5:c.1669_1671del	p.Trp557del	p.W557del	ENST00000288135	NM_000222.2	556	caGTGg/cag																																																																														
MAX	0	MSKCC	GRCh37	14	65544629	65544662	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACCTTGCTGCTCCAGAAGAGCATTCTGCCGCTTG	ACCTTGCTGCTCCAGAAGAGCATTCTGCCGCTTG	-			P-0015065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	374	404	0	ENST00000358664.4:c.264_295+2del		p.X88_splice	ENST00000358664	NM_002382.4	88																																																																															
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015493-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			511	57	783	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32190320	32190320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015493-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			303	28	587	3	ENST00000375023.3:c.419G>A	p.Arg140His	p.R140H	ENST00000375023	NM_004557.3	140	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0016484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			649	93	1073	0	ENST00000269305.4:c.487T>G	p.Tyr163Asp	p.Y163D	ENST00000269305	NM_001126112.2	163	Tac/Gac																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15290223	15290223	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0016484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			692	106	1252	0	ENST00000263388.2:c.3412A>C	p.Ile1138Leu	p.I1138L	ENST00000263388	NM_000435.2	1138	Att/Ctt																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149495481	149495481	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0016484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			915	66	1555	0	ENST00000261799.4:c.3166T>A	p.Ser1056Thr	p.S1056T	ENST00000261799	NM_002609.3	1056	Tca/Aca																																																																														
PRDM14	0	MSKCC	GRCh37	8	70967599	70967599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			730	73	888	1	ENST00000276594.2:c.1424G>A	p.Ser475Asn	p.S475N	ENST00000276594	NM_024504.3	475	aGc/aAc																																																																														
NBN	0	MSKCC	GRCh37	8	90982735	90982735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0016484-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			805	52	678	3	ENST00000265433.3:c.753G>T	p.Leu251Phe	p.L251F	ENST00000265433	NM_002485.4	251	ttG/ttT																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610637	10610637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	99	783	0	ENST00000171111.5:c.73G>C	p.Glu25Gln	p.E25Q	ENST00000171111	NM_203500.1	25	Gag/Cag																																																																														
PTEN	0	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			328	86	496	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578406	7578406	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			488	132	794	0	ENST00000269305.4:c.524del	p.Arg175ProfsTer72	p.R175Pfs*72	ENST00000269305	NM_001126112.2	175	cGc/cc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64128940	64128940	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			587	119	759	2	ENST00000334205.4:c.571-1G>A		p.X191_splice	ENST00000334205	NM_003942.2	191																																																																															
IRS2	0	MSKCC	GRCh37	13	110434602	110434602	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			468	132	773	1	ENST00000375856.3:c.3799C>T	p.Gln1267Ter	p.Q1267*	ENST00000375856	NM_003749.2	1267	Cag/Tag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748196	43748196	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			675	106	802	0	ENST00000382044.4:c.2610A>T	p.Glu870Asp	p.E870D	ENST00000382044	NM_001141980.1	870	gaA/gaT																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610601	10610601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	113	869	1	ENST00000171111.5:c.109G>A	p.Glu37Lys	p.E37K	ENST00000171111	NM_203500.1	37	Gag/Aag																																																																														
ATR	0	MSKCC	GRCh37	3	142272106	142272106	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			664	126	628	0	ENST00000350721.4:c.2768A>G	p.Gln923Arg	p.Q923R	ENST00000350721	NM_001184.3	923	cAa/cGa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178947876	178947876	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	454	532	1	ENST00000263967.3:c.2751C>G	p.His917Gln	p.H917Q	ENST00000263967	NM_006218.2	917	caC/caG																																																																														
FBXW7	0	MSKCC	GRCh37	4	153271269	153271270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			224	64	365	0	ENST00000281708.4:c.507_508dup	p.Arg170LysfsTer70	p.R170Kfs*70	ENST00000281708	NM_033632.3	170	aga/aAAga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21968233	21968233	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	77	555	0	ENST00000304494.5:c.466delG	p.Asp156IlefsTer37	p.D156Ifs*37	ENST00000304494	NM_000077.4	156	Gat/at																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21968233	21968233	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0016518-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	77	555	0	ENST00000304494.5:c.466delG	p.Asp156IlefsTer37	p.D156Ifs*37	ENST00000304494	NM_000077.4	156	Gat/at																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	522	620	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0017112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	851	783	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NF1	0	MSKCC	GRCh37	17	29541542	29541542	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			142	20	552	0	ENST00000358273.4:c.1466A>G	p.Tyr489Cys	p.Y489C	ENST00000358273	NM_001042492.2	489	tAt/tGt																																																																														
ARID5B	0	MSKCC	GRCh37	10	63817051	63817051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			762	118	222	0	ENST00000279873.7:c.1022G>A	p.Arg341Gln	p.R341Q	ENST00000279873	NM_032199.2	341	cGa/cAa																																																																														
ATM	0	MSKCC	GRCh37	11	108164182	108164182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0017112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	154	307	0	ENST00000278616.4:c.4754G>C	p.Arg1585Thr	p.R1585T	ENST00000278616	NM_000051.3	1585	aGa/aCa																																																																														
TBX3	0	MSKCC	GRCh37	12	115112126	115112135	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGCGGCC	GCCAGCGGCC	-			P-0017112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			803	514	787	1	ENST00000257566.3:c.1605_1614del	p.Ala536TrpfsTer93	p.A536Wfs*93	ENST00000257566	NM_016569.3	535	gcGGCCGCTGGC/gc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112142	115112142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			757	537	774	1	ENST00000257566.3:c.1598G>A	p.Ser533Asn	p.S533N	ENST00000257566	NM_016569.3	533	aGc/aAc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160744	56160745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	148	435	0	ENST00000399503.3:c.1019dup	p.Phe341ValfsTer44	p.F341Vfs*44	ENST00000399503	NM_005921.1	340	gtg/gTtg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178091	56178091	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	137	344	0	ENST00000399503.3:c.3064C>T	p.Gln1022Ter	p.Q1022*	ENST00000399503	NM_005921.1	1022	Cag/Tag																																																																														
RAD21	0	MSKCC	GRCh37	8	117862867	117862867	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0017112-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			735	631	561	0	ENST00000297338.2:c.1610A>C	p.Glu537Ala	p.E537A	ENST00000297338	NM_006265.2	537	gAa/gCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0018696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	93	721	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0018696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			352	57	363	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
RNF43	0	MSKCC	GRCh37	17	56492854	56492854	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0018696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	86	548	0	ENST00000407977.2:c.85G>T	p.Gly29Ter	p.G29*	ENST00000407977		29	Gga/Tga																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228979	36228979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	122	665	1	ENST00000222270.7:c.7759C>T	p.Arg2587Ter	p.R2587*	ENST00000222270	NM_014727.1	2587	Cga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434537	49434537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			540	111	683	0	ENST00000301067.7:c.7016A>G	p.Glu2339Gly	p.E2339G	ENST00000301067	NM_003482.3	2339	gAg/gGg																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66520194	66520194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0018696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			603	114	597	2	ENST00000358598.2:c.478G>A	p.Ala160Thr	p.A160T	ENST00000358598	NM_212471.2	160	Gca/Aca																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221469	36221469	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0018696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			703	164	924	0	ENST00000222270.7:c.5228T>C	p.Leu1743Pro	p.L1743P	ENST00000222270	NM_014727.1	1743	cTg/cCg																																																																														
ERCC3	0	MSKCC	GRCh37	2	128018806	128018806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0018696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	99	462	0	ENST00000285398.2:c.2062A>G	p.Lys688Glu	p.K688E	ENST00000285398	NM_000122.1	688	Aag/Gag																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715621	30715621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0018696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	127	285	0	ENST00000359013.4:c.1354C>G	p.Pro452Ala	p.P452A	ENST00000359013	NM_001024847.2	452	Cca/Gca																																																																														
ARAF	0	MSKCC	GRCh37	X	47422653	47422653	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			597	108	675	0	ENST00000377045.4:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000377045	NM_001654.4	42	tAc/tGc																																																																														
XIAP	0	MSKCC	GRCh37	X	123041015	123041015	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0018696-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			175	10	178	0	ENST00000355640.3:c.1478A>G	p.Lys493Arg	p.K493R	ENST00000355640		493	aAa/aGa																																																																														
MTOR	0	MSKCC	GRCh37	1	11172947	11172947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	112	662	0	ENST00000361445.4:c.7328G>A	p.Arg2443Gln	p.R2443Q	ENST00000361445	NM_004958.3	2443	cGa/cAa																																																																														
B2M	0	MSKCC	GRCh37	15	45007719	45007719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0019157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			418	114	607	0	ENST00000558401.1:c.166G>T	p.Glu56Ter	p.E56*	ENST00000558401	NM_004048.2	56	Gaa/Taa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5265034	5265034	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0019157-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			401	135	780	0	ENST00000357368.4:c.553A>C	p.Lys185Gln	p.K185Q	ENST00000357368	NM_002850.3	185	Aaa/Caa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020076-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			974	228	665	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
FLT3	0	MSKCC	GRCh37	13	28636057	28636057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020076-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			606	388	790	0	ENST00000241453.7:c.315G>C	p.Trp105Cys	p.W105C	ENST00000241453	NM_004119.2	105	tgG/tgC																																																																														
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020076-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			630	277	832	0	ENST00000269305.4:c.808T>A	p.Phe270Ile	p.F270I	ENST00000269305	NM_001126112.2	270	Ttt/Att																																																																														
NSD1	0	MSKCC	GRCh37	5	176721286	176721286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020076-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			626	49	494	0	ENST00000439151.2:c.6917C>A	p.Ser2306Tyr	p.S2306Y	ENST00000439151	NM_022455.4	2306	tCc/tAc																																																																														
RB1	0	MSKCC	GRCh37	13	48881462	48881462	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	39	344	0	ENST00000267163.4:c.184C>T	p.Gln62Ter	p.Q62*	ENST00000267163	NM_000321.2	62	Cag/Tag																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843739	156843739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	89	1049	2	ENST00000524377.1:c.1165G>A	p.Asp389Asn	p.D389N	ENST00000524377	NM_002529.3	389	Gac/Aac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	14	177	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56488222	56488222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	63	666	0	ENST00000267101.3:c.1741G>A	p.Asp581Asn	p.D581N	ENST00000267101	NM_001982.3	581	Gat/Aat																																																																														
GATA3	0	MSKCC	GRCh37	10	8111435	8111435	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	33	543	2	ENST00000346208.3:c.922-1G>A		p.X308_splice	ENST00000346208		308																																																																															
ARID2	0	MSKCC	GRCh37	12	46230594	46230598	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAG	TGAAG	-			P-0020449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	32	608	0	ENST00000334344.6:c.843_847del	p.Ile281MetfsTer17	p.I281Mfs*17	ENST00000334344	NM_152641.2	281	atTGAAGga/atga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9928005	9928005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	32	463	0	ENST00000330684.3:c.1734C>A	p.Tyr578Ter	p.Y578*	ENST00000330684	NM_001134407.1	578	taC/taA																																																																														
FANCA	0	MSKCC	GRCh37	16	89842197	89842197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	91	808	0	ENST00000389301.3:c.1853A>G	p.Tyr618Cys	p.Y618C	ENST00000389301	NM_000135.2	618	tAc/tGc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272344	15272344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	154	1059	3	ENST00000263388.2:c.6095G>T	p.Ser2032Ile	p.S2032I	ENST00000263388	NM_000435.2	2032	aGc/aTc																																																																														
CUL3	0	MSKCC	GRCh37	2	225378265	225378266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	48	501	0	ENST00000264414.4:c.629dup	p.Leu210PhefsTer20	p.L210Ffs*20	ENST00000264414	NM_003590.4	210	ttg/ttTg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62321517	62321517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	68	1008	1	ENST00000508582.2:c.2291A>T	p.His764Leu	p.H764L	ENST00000508582		764	cAt/cTt																																																																														
WWTR1	0	MSKCC	GRCh37	3	149290734	149290734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	66	783	0	ENST00000360632.3:c.485C>T	p.Pro162Leu	p.P162L	ENST00000360632	NM_015472.4	162	cCt/cTt																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778245	27778245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020449-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	62	589	0	ENST00000369163.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000369163	NM_003536.2	132	Cgc/Tgc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711910	89711910	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0020452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	149	621	0	ENST00000371953.3:c.528T>G	p.Tyr176Ter	p.Y176*	ENST00000371953	NM_000314.4	176	taT/taG																																																																														
CDH1	0	MSKCC	GRCh37	16	68849471	68849471	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	187	668	0	ENST00000261769.5:c.1374del	p.Asn458LysfsTer23	p.N458Kfs*23	ENST00000261769	NM_004360.3	458	aaT/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	618	787	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	83	267	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
SDHA	0	MSKCC	GRCh37	5	251554	251554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1268	192	672	0	ENST00000264932.6:c.1765C>T	p.Arg589Trp	p.R589W	ENST00000264932	NM_004168.2	589	Cgg/Tgg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602328	10602328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	702	843	3	ENST00000171111.5:c.1250G>T	p.Gly417Val	p.G417V	ENST00000171111	NM_203500.1	417	gGg/gTg																																																																														
B2M	0	MSKCC	GRCh37	15	45007768	45007768	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	263	465	0	ENST00000558401.1:c.215C>G	p.Ser72Ter	p.S72*	ENST00000558401	NM_004048.2	72	tCa/tGa																																																																														
BRAF	0	MSKCC	GRCh37	7	140439656	140439656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	97	387	0	ENST00000288602.6:c.2083G>C	p.Glu695Gln	p.E695Q	ENST00000288602	NM_004333.4	695	Gag/Cag																																																																														
CSF3R	0	MSKCC	GRCh37	1	36933742	36933742	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	576	780	0	ENST00000361632.4:c.1657G>T	p.Glu553Ter	p.E553*	ENST00000361632		553	Gag/Tag																																																																														
DDR2	0	MSKCC	GRCh37	1	162740116	162740116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	116	474	0	ENST00000367921.3:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000367921	NM_006182.2	440	Gaa/Aaa																																																																														
FH	0	MSKCC	GRCh37	1	241663871	241663871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	111	446	0	ENST00000366560.3:c.1256C>T	p.Ser419Leu	p.S419L	ENST00000366560	NM_000143.3	419	tCa/tTa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49448360	49448360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	47	679	0	ENST00000301067.7:c.351G>C	p.Gln117His	p.Q117H	ENST00000301067	NM_003482.3	117	caG/caC																																																																														
PTPN11	0	MSKCC	GRCh37	12	112940047	112940047	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	210	845	0	ENST00000351677.2:c.1699C>G	p.Pro567Ala	p.P567A	ENST00000351677	NM_002834.3	567	Cca/Gca																																																																														
BRCA2	0	MSKCC	GRCh37	13	32893285	32893285	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	75	540	1	ENST00000380152.3:c.139G>T	p.Ala47Ser	p.A47S	ENST00000380152		47	Gca/Tca																																																																														
IRS2	0	MSKCC	GRCh37	13	110435067	110435067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	290	861	0	ENST00000375856.3:c.3334G>A	p.Glu1112Lys	p.E1112K	ENST00000375856	NM_003749.2	1112	Gag/Aag																																																																														
B2M	0	MSKCC	GRCh37	15	45007803	45007803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	32	489	0	ENST00000558401.1:c.250C>T	p.Leu84Phe	p.L84F	ENST00000558401	NM_004048.2	84	Ctc/Ttc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3788590	3788590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	172	534	0	ENST00000262367.5:c.4364T>C	p.Ile1455Thr	p.I1455T	ENST00000262367	NM_004380.2	1455	aTt/aCt																																																																														
CYLD	0	MSKCC	GRCh37	16	50825599	50825599	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	67	436	0	ENST00000398568.2:c.2230G>A	p.Glu744Lys	p.E744K	ENST00000398568	NM_001042412.1	744	Gag/Aag																																																																														
CYLD	0	MSKCC	GRCh37	16	50827538	50827538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	130	608	0	ENST00000398568.2:c.2423G>A	p.Gly808Glu	p.G808E	ENST00000398568	NM_001042412.1	808	gGa/gAa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15950282	15950282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	68	752	0	ENST00000268712.3:c.6662G>C	p.Gly2221Ala	p.G2221A	ENST00000268712	NM_006311.3	2221	gGa/gCa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15950313	15950313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	84	788	0	ENST00000268712.3:c.6631G>C	p.Glu2211Gln	p.E2211Q	ENST00000268712	NM_006311.3	2211	Gag/Cag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15995257	15995257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	141	598	0	ENST00000268712.3:c.2936G>A	p.Arg979Lys	p.R979K	ENST00000268712	NM_006311.3	979	aGa/aAa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16041478	16041478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	97	354	0	ENST00000268712.3:c.1401G>C	p.Glu467Asp	p.E467D	ENST00000268712	NM_006311.3	467	gaG/gaC																																																																														
BRCA1	0	MSKCC	GRCh37	17	41228545	41228545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	165	748	0	ENST00000357654.3:c.4444G>A	p.Asp1482Asn	p.D1482N	ENST00000357654	NM_007294.3	1482	Gat/Aat																																																																														
SPOP	0	MSKCC	GRCh37	17	47699427	47699427	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	90	354	0	ENST00000347630.2:c.81C>G	p.Ile27Met	p.I27M	ENST00000347630	NM_001007230.1	27	atC/atG																																																																														
SRSF2	0	MSKCC	GRCh37	17	74733140	74733140	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	75	639	0	ENST00000359995.5:c.103G>C	p.Glu35Gln	p.E35Q	ENST00000359995	NM_001195427.1	35	Gag/Cag																																																																														
INSR	0	MSKCC	GRCh37	19	7152923	7152923	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	129	520	0	ENST00000302850.5:c.2045C>G	p.Ser682Trp	p.S682W	ENST00000302850	NM_000208.2	682	tCg/tGg																																																																														
POLD1	0	MSKCC	GRCh37	19	50905960	50905960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	782	888	1	ENST00000440232.2:c.932G>T	p.Arg311Leu	p.R311L	ENST00000440232	NM_002691.3	311	cGc/cTc																																																																														
MSH2	0	MSKCC	GRCh37	2	47707966	47707966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	109	481	0	ENST00000233146.2:c.2590G>A	p.Asp864Asn	p.D864N	ENST00000233146	NM_000251.2	864	Gat/Aat																																																																														
ERCC3	0	MSKCC	GRCh37	2	128051181	128051181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	248	663	2	ENST00000285398.2:c.142G>C	p.Glu48Gln	p.E48Q	ENST00000285398	NM_000122.1	48	Gag/Cag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096202	178096202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	153	453	0	ENST00000397062.3:c.1129G>A	p.Glu377Lys	p.E377K	ENST00000397062	NM_006164.4	377	Gaa/Aaa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178097986	178097986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	115	464	1	ENST00000397062.3:c.394G>A	p.Asp132Asn	p.D132N	ENST00000397062	NM_006164.4	132	Gac/Aac																																																																														
SF3B1	0	MSKCC	GRCh37	2	198299715	198299715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	104	464	0	ENST00000335508.6:c.9G>T	p.Lys3Asn	p.K3N	ENST00000335508	NM_012433.2	3	aaG/aaT																																																																														
IDH1	0	MSKCC	GRCh37	2	209108166	209108166	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	230	389	0	ENST00000345146.2:c.683A>G	p.Gln228Arg	p.Q228R	ENST00000345146	NM_005896.2	228	cAg/cGg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62321686	62321686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	289	769	0	ENST00000508582.2:c.2377C>T	p.Arg793Cys	p.R793C	ENST00000508582		793	Cgt/Tgt																																																																														
PPARG	0	MSKCC	GRCh37	3	12458338	12458338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	200	727	0	ENST00000287820.6:c.955G>A	p.Glu319Lys	p.E319K	ENST00000287820	NM_015869.4	319	Gag/Aag																																																																														
MST1R	0	MSKCC	GRCh37	3	49940706	49940706	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3733136		P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	155	474	0	ENST00000296474.3:c.337G>A	p.Gly113Ser	p.G113S	ENST00000296474	NM_002447.2	113	Ggc/Agc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52651527	52651527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	35	553	2	ENST00000394830.3:c.1569G>C	p.Met523Ile	p.M523I	ENST00000394830	NM_018313.4	523	atG/atC																																																																														
PBRM1	0	MSKCC	GRCh37	3	52668722	52668722	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	36	609	0	ENST00000394830.3:c.1197C>G	p.Asn399Lys	p.N399K	ENST00000394830	NM_018313.4	399	aaC/aaG																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928074	178928074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	54	650	0	ENST00000263967.3:c.1352G>C	p.Gly451Ala	p.G451A	ENST00000263967	NM_006218.2	451	gGa/gCa																																																																														
TP63	0	MSKCC	GRCh37	3	189586400	189586400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	161	312	0	ENST00000264731.3:c.1024G>T	p.Ala342Ser	p.A342S	ENST00000264731	NM_003722.4	342	Gcc/Tcc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213869	66213869	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	39	636	0	ENST00000273854.3:c.2561A>T	p.Lys854Met	p.K854M	ENST00000273854	NM_004439.5	854	aAg/aTg																																																																														
TET2	0	MSKCC	GRCh37	4	106157752	106157752	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	57	274	0	ENST00000380013.4:c.2653G>T	p.Glu885Ter	p.E885*	ENST00000380013	NM_001127208.2	885	Gaa/Taa																																																																														
CARD11	0	MSKCC	GRCh37	7	2959103	2959103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	116	760	1	ENST00000396946.4:c.2413G>A	p.Asp805Asn	p.D805N	ENST00000396946	NM_032415.4	805	Gac/Aac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8449736	8449736	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	132	596	2	ENST00000356435.5:c.3977T>C	p.Phe1326Ser	p.F1326S	ENST00000356435		1326	tTt/tCt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486135	8486135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	178	504	0	ENST00000356435.5:c.2682G>T	p.Arg894Ser	p.R894S	ENST00000356435		894	agG/agT																																																																														
BCOR	0	MSKCC	GRCh37	X	39932333	39932333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	275	868	4	ENST00000378444.4:c.2266G>A	p.Glu756Lys	p.E756K	ENST00000378444	NM_001123385.1	756	Gag/Aag																																																																														
RBM10	0	MSKCC	GRCh37	X	47045943	47045943	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	228	806	0	ENST00000329236.7:c.2504C>G	p.Ser835Cys	p.S835C	ENST00000329236	NM_001204466.1	835	tCc/tGc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118371751	118371751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	148	590	0	ENST00000534358.1:c.6208T>C	p.Tyr2070His	p.Y2070H	ENST00000534358	NM_005933.3	2070	Tat/Cat																																																																														
IRS2	0	MSKCC	GRCh37	13	110436805	110436805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	344	1336	0	ENST00000375856.3:c.1596C>G	p.Asp532Glu	p.D532E	ENST00000375856	NM_003749.2	532	gaC/gaG																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272209	15272209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	243	961	0	ENST00000263388.2:c.6230C>T	p.Pro2077Leu	p.P2077L	ENST00000263388	NM_000435.2	2077	cCc/cTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151949753	151949765	+	frameshift_variant	Frame_Shift_Del	DEL	CCACTGAGAACTA	CCACTGAGAACTA	-			P-0020482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	196	893	0	ENST00000262189.6:c.1335_1347del	p.Ser446ThrfsTer5	p.S446Tfs*5	ENST00000262189	NM_170606.2	445	tcTAGTTCTCAGTGG/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	227	1085	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	169	1163	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
FLT4	0	MSKCC	GRCh37	5	180030213	180030213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	118	1096	3	ENST00000261937.6:c.4071C>A	p.Phe1357Leu	p.F1357L	ENST00000261937	NM_182925.4	1357	ttC/ttA																																																																														
SPOP	0	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	162	760	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																														
ATM	0	MSKCC	GRCh37	11	108236235	108236235	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0020495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	185	685	0	ENST00000278616.4:c.9171A>G	p.Ter3057TrpextTer29	p.*3057Wext*29	ENST00000278616	NM_000051.3	3057	tgA/tgG																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153332607	153332607	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	98	875	0	ENST00000281708.4:c.349G>T	p.Glu117Ter	p.E117*	ENST00000281708	NM_033632.3	117	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	532	1738	2	ENST00000269305.4:c.454C>T	p.Pro152Ser	p.P152S	ENST00000269305	NM_001126112.2	152	Ccg/Tcg																																																																														
AXIN1	0	MSKCC	GRCh37	16	354425	354425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	295	1363	2	ENST00000262320.3:c.1133C>T	p.Pro378Leu	p.P378L	ENST00000262320	NM_003502.3	378	cCg/cTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71949207	71949207	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	409	1750	0	ENST00000298229.2:c.3674T>C	p.Leu1225Pro	p.L1225P	ENST00000298229	NM_001567.3	1225	cTg/cCg																																																																														
CDH1	0	MSKCC	GRCh37	16	68863698	68863698	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	158	621	1	ENST00000261769.5:c.2437G>T	p.Glu813Ter	p.E813*	ENST00000261769	NM_004360.3	813	Gaa/Taa																																																																														
STK11	0	MSKCC	GRCh37	19	1218467	1218467	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	331	1287	0	ENST00000326873.7:c.343del	p.Asp115MetfsTer14	p.D115Mfs*14	ENST00000326873	NM_000455.4	114	gtG/gt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610113	10610113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	373	1328	2	ENST00000171111.5:c.597G>T	p.Leu199Phe	p.L199F	ENST00000171111	NM_203500.1	199	ttG/ttT																																																																														
FAT1	0	MSKCC	GRCh37	4	187524492	187524492	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	212	1191	1	ENST00000441802.2:c.11188A>T	p.Ile3730Leu	p.I3730L	ENST00000441802	NM_005245.3	3730	Ata/Tta																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149514495	149514495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	294	1176	0	ENST00000261799.4:c.449G>A	p.Arg150Gln	p.R150Q	ENST00000261799	NM_002609.3	150	cGa/cAa																																																																														
ETV1	0	MSKCC	GRCh37	7	13946134	13946134	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	257	1092	0	ENST00000405192.2:c.962T>C	p.Leu321Pro	p.L321P	ENST00000405192	NM_001163147.1	321	cTt/cCt																																																																														
NF1	0	MSKCC	GRCh37	17	29661946	29661946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	126	1038	4	ENST00000358273.4:c.5903G>A	p.Arg1968Gln	p.R1968Q	ENST00000358273	NM_001042492.2	1968	cGa/cAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713365	40713365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	58	1308	0	ENST00000373198.4:c.4150G>A	p.Glu1384Lys	p.E1384K	ENST00000373198	NM_133170.3	1384	Gag/Aag																																																																														
ELF3	0	MSKCC	GRCh37	1	201980418	201980418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	47	1161	0	ENST00000359651.3:c.154G>C	p.Glu52Gln	p.E52Q	ENST00000359651		52	Gag/Cag																																																																														
ARID2	0	MSKCC	GRCh37	12	46231391	46231391	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	95	872	1	ENST00000334344.6:c.1231G>C	p.Asp411His	p.D411H	ENST00000334344	NM_152641.2	411	Gat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577548	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	139	1258	2	ENST00000269305.4:c.733_734delinsTT	p.Gly245Phe	p.G245F	ENST00000269305	NM_001126112.2	245	GGc/TTc																																																																														
GNA11	0	MSKCC	GRCh37	19	3094731	3094731	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	41	934	1	ENST00000078429.4:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000078429	NM_002067.2	28	Cag/Tag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222841	5222841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	52	940	1	ENST00000357368.4:c.2962G>A	p.Glu988Lys	p.E988K	ENST00000357368	NM_002850.3	988	Gag/Aag																																																																														
MYCN	0	MSKCC	GRCh37	2	16085904	16085904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	114	870	1	ENST00000281043.3:c.1080G>T	p.Lys360Asn	p.K360N	ENST00000281043	NM_005378.4	360	aaG/aaT																																																																														
PTPRT	0	MSKCC	GRCh37	20	40710649	40710649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	39	917	0	ENST00000373198.4:c.4202G>A	p.Gly1401Glu	p.G1401E	ENST00000373198	NM_133170.3	1401	gGa/gAa																																																																														
EP300	0	MSKCC	GRCh37	22	41562602	41562602	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	50	809	0	ENST00000263253.7:c.3807-1G>C		p.X1269_splice	ENST00000263253	NM_001429.3	1269																																																																															
PPARG	0	MSKCC	GRCh37	3	12421280	12421280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	49	1327	1	ENST00000287820.6:c.160G>A	p.Glu54Lys	p.E54K	ENST00000287820	NM_015869.4	54	Gaa/Aaa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920070	1920070	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	143	1133	0	ENST00000382891.5:c.1130C>G	p.Ser377Ter	p.S377*	ENST00000382891	NM_133335.3	377	tCa/tGa																																																																														
RAD50	0	MSKCC	GRCh37	5	131951748	131951748	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	56	579	0	ENST00000265335.6:c.3090A>T	p.Glu1030Asp	p.E1030D	ENST00000265335		1030	gaA/gaT																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508120	106508120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	98	379	0	ENST00000359195.3:c.114C>G	p.Ile38Met	p.I38M	ENST00000359195	NM_002649.2	38	atC/atG																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106545592	106545592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	199	976	1	ENST00000359195.3:c.3069C>A	p.His1023Gln	p.H1023Q	ENST00000359195	NM_002649.2	1023	caC/caA																																																																														
FGFR1	0	MSKCC	GRCh37	8	38273504	38273504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	542	1363	3	ENST00000425967.3:c.1831G>T	p.Gly611Trp	p.G611W	ENST00000425967	NM_001174067.1	611	Ggg/Tgg																																																																														
SOX17	0	MSKCC	GRCh37	8	55370789	55370789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	146	795	0	ENST00000297316.4:c.91C>A	p.Pro31Thr	p.P31T	ENST00000297316	NM_022454.3	31	Ccc/Acc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981456	70981456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	145	1743	0	ENST00000276594.2:c.640G>C	p.Glu214Gln	p.E214Q	ENST00000276594	NM_024504.3	214	Gag/Cag																																																																														
NTRK2	0	MSKCC	GRCh37	9	87563482	87563482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	146	1128	0	ENST00000277120.3:c.1870G>T	p.Val624Leu	p.V624L	ENST00000277120		624	Gtg/Ttg																																																																														
STAG2	0	MSKCC	GRCh37	X	123164908	123164908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	78	284	0	ENST00000218089.9:c.221A>G	p.His74Arg	p.H74R	ENST00000218089	NM_001042749.1	74	cAc/cGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	79	977	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	136	848	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	85	1011	2	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	124	717	0	ENST00000371953.3:c.389G>C	p.Arg130Pro	p.R130P	ENST00000371953	NM_000314.4	130	cGa/cCa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	89	477	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112569	115112569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	223	1235	1	ENST00000257566.3:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000257566	NM_016569.3	391	Gac/Aac																																																																														
NCOA3	0	MSKCC	GRCh37	20	46254148	46254148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	72	744	0	ENST00000371998.3:c.280G>A	p.Asp94Asn	p.D94N	ENST00000371998		94	Gat/Aat																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023622	27023622	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	66	398	0	ENST00000324856.7:c.728C>G	p.Ala243Gly	p.A243G	ENST00000324856	NM_006015.4	243	gCg/gGg																																																																														
TSC2	0	MSKCC	GRCh37	16	2108787	2108788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	206	1152	0	ENST00000219476.3:c.894dup	p.Val299CysfsTer39	p.V299Cfs*39	ENST00000219476	NM_000548.3	296	-/T																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023645	27023666	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCTCCCTCCTCCAGCGCCT	CCGCCTCCCTCCTCCAGCGCCT	-			P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	69	500	0	ENST00000324856.7:c.759_780del	p.Ser254ArgfsTer102	p.S254Rfs*102	ENST00000324856	NM_006015.4	251	CCGCCTCCCTCCTCCAGCGCCTcc/cc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087373	27087373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	119	905	0	ENST00000324856.7:c.1950delC	p.Met651TrpfsTer7	p.M651Wfs*7	ENST00000324856	NM_006015.4	649	ctC/ct																																																																														
TSC2	0	MSKCC	GRCh37	16	2134629	2134629	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	217	1165	1	ENST00000219476.3:c.4406C>G	p.Ser1469Ter	p.S1469*	ENST00000219476	NM_000548.3	1469	tCa/tGa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739899	145739899	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	146	910	0	ENST00000428558.2:c.1631T>C	p.Leu544Pro	p.L544P	ENST00000428558	NM_004260.3	544	cTg/cCg																																																																														
RXRA	0	MSKCC	GRCh37	9	137293644	137293644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	195	1401	2	ENST00000481739.1:c.195C>A	p.Phe65Leu	p.F65L	ENST00000481739	NM_002957.4	65	ttC/ttA																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	563	825	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	358	876	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56167804	56167805	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0020566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	666	695	0	ENST00000399503.3:c.1370_1371delCA	p.Thr457SerfsTer3	p.T457Sfs*3	ENST00000399503	NM_005921.1	457	ACa/a																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	294	901	2	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
VHL	0	MSKCC	GRCh37	3	10188200	10188200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0020576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	177	618	1	ENST00000256474.2:c.343C>A	p.His115Asn	p.H115N	ENST00000256474	NM_000551.3	115	Cac/Aac																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4101073	4101073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	97	474	1	ENST00000262948.5:c.649G>A	p.Gly217Ser	p.G217S	ENST00000262948	NM_030662.3	217	Ggc/Agc																																																																														
PAK7	0	MSKCC	GRCh37	20	9560937	9560937	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	92	555	1	ENST00000353224.5:c.845T>C	p.Met282Thr	p.M282T	ENST00000353224	NM_177990.2	282	aTg/aCg																																																																														
BAP1	0	MSKCC	GRCh37	3	52440924	52440924	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0020576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	156	625	0	ENST00000460680.1:c.581-1G>C		p.X194_splice	ENST00000460680	NM_004656.3	194																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67592045	67592133	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAAGACATGGAATGTTGGAAGCAGCAACCGAAACAAAGCTGAAAACCTGTTGCGAGGGAAGCGAGATGGCACTTTTCTTGTCCGGGA	GAGAAGACATGGAATGTTGGAAGCAGCAACCGAAACAAAGCTGAAAACCTGTTGCGAGGGAAGCGAGATGGCACTTTTCTTGTCCGGGA	-			P-0020647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	25	324	0	ENST00000274335.5:c.1864_1952del	p.Lys622GlnfsTer2	p.K622Qfs*2	ENST00000274335		621	GAGAAGACATGGAATGTTGGAAGCAGCAACCGAAACAAAGCTGAAAACCTGTTGCGAGGGAAGCGAGATGGCACTTTTCTTGTCCGGGAg/g																																																																														
STAG2	0	MSKCC	GRCh37	X	123195650	123195650	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	194	477	0	ENST00000218089.9:c.1564A>T	p.Ile522Phe	p.I522F	ENST00000218089	NM_001042749.1	522	Att/Ttt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969458	44969459	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0020647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	258	692	0	ENST00000377967.4:c.4140_4141delinsC	p.Met1380IlefsTer4	p.M1380Ifs*4	ENST00000377967	NM_021140.2	1380	atGGag/atCag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	293	708	1	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac																																																																														
APC	0	MSKCC	GRCh37	5	112175136	112175136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	27	281	0	ENST00000257430.4:c.3845C>A	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/tAa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910429	32910429	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	42	462	0	ENST00000380152.3:c.1937G>T	p.Ser646Ile	p.S646I	ENST00000380152		646	aGc/aTc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061192	38061192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	238	674	0	ENST00000250448.2:c.797T>C	p.Phe266Ser	p.F266S	ENST00000250448	NM_004496.3	266	tTc/tCc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061243	38061243	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	436	1029	0	ENST00000250448.2:c.746A>C	p.Asp249Ala	p.D249A	ENST00000250448	NM_004496.3	249	gAc/gCc																																																																														
APC	0	MSKCC	GRCh37	5	112157637	112157646	+	frameshift_variant	Frame_Shift_Del	DEL	CTAATGAAAC	CTAATGAAAC	-			P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	67	729	0	ENST00000257430.4:c.1357_1366del	p.Leu453PhefsTer11	p.L453Ffs*11	ENST00000257430	NM_000038.5	453	CTAATGAAACtt/tt																																																																														
PREX2	0	MSKCC	GRCh37	8	68984792	68984792	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	379	720	3	ENST00000288368.4:c.1556G>A	p.Trp519Ter	p.W519*	ENST00000288368	NM_024870.2	519	tGg/tAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	253	723	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112174916	112174916	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	60	378	0	ENST00000257430.4:c.3625G>T	p.Glu1209Ter	p.E1209*	ENST00000257430	NM_000038.5	1209	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	59	1032	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	70	754	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PTEN	0	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0020680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	40	690	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0020680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	49	871	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100111	27100111	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	93	841	0	ENST00000324856.7:c.3910del	p.Ala1304ProfsTer177	p.A1304Pfs*177	ENST00000324856	NM_006015.4	1303	Ggg/gg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942195	71942195	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	66	905	0	ENST00000298229.2:c.1463delG	p.Gly488AlafsTer43	p.G488Afs*43	ENST00000298229	NM_001567.3	487	Ggg/gg																																																																														
SESN3	0	MSKCC	GRCh37	11	94911951	94911951	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	98	1159	0	ENST00000536441.1:c.979T>A	p.Tyr327Asn	p.Y327N	ENST00000536441	NM_144665.3	327	Tat/Aat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427726	49427726	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	47	949	1	ENST00000301067.7:c.10762C>G	p.His3588Asp	p.H3588D	ENST00000301067	NM_003482.3	3588	Cac/Gac																																																																														
CIC	0	MSKCC	GRCh37	19	42793525	42793525	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	48	1005	1	ENST00000575354.2:c.1327A>G	p.Ile443Val	p.I443V	ENST00000575354	NM_015125.3	443	Atc/Gtc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952019	178952019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	42	727	0	ENST00000263967.3:c.3074C>G	p.Thr1025Ser	p.T1025S	ENST00000263967	NM_006218.2	1025	aCc/aGc																																																																														
ATRX	0	MSKCC	GRCh37	X	76889193	76889193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	29	824	0	ENST00000373344.5:c.4817G>T	p.Ser1606Ile	p.S1606I	ENST00000373344	NM_000489.3	1606	aGt/aTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	1085	917	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
VTCN1	0	MSKCC	GRCh37	1	117695838	117695838	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	485	949	0	ENST00000369458.3:c.599A>T	p.Glu200Val	p.E200V	ENST00000369458	NM_024626.3	200	gAg/gTg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983978	15983978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	188	628	0	ENST00000268712.3:c.3241C>T	p.Pro1081Ser	p.P1081S	ENST00000268712	NM_006311.3	1081	Ccg/Tcg																																																																														
NF1	0	MSKCC	GRCh37	17	29422303	29422341	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	GCCGCCCCCCGGCCGCGGGGAGGACATGGCCGCGCACAG	GCCGCCCCCCGGCCGCGGGGAGGACATGGCCGCGCACAG	-			P-0020687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	388	26	0	ENST00000358273.4:c.-21_18delCCCCCCGGCCGCGGGGAGGACATGGCCGCGCACAGGCCG		p.*7*	ENST00000358273	NM_001042492.2	7																																																																															
RNF43	0	MSKCC	GRCh37	17	56434924	56434939	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGGTTCCAGGGGCT	TGTGGTTCCAGGGGCT	-			P-0020687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	35	896	0	ENST00000407977.2:c.2198_2213del	p.Gln733LeufsTer89	p.Q733Lfs*89	ENST00000407977		733	cAGCCCCTGGAACCACAt/ct																																																																														
ABL1	0	MSKCC	GRCh37	9	133755494	133755494	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	505	863	0	ENST00000318560.5:c.1465del	p.Ile489SerfsTer31	p.I489Sfs*31	ENST00000318560	NM_005157.4	488	gAa/ga																																																																														
KDM5C	0	MSKCC	GRCh37	X	53231127	53231127	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	29	761	0	ENST00000375401.3:c.1775A>C	p.Glu592Ala	p.E592A	ENST00000375401	NM_004187.3	592	gAg/gCg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020747-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			399	101	513	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																																																														
ATM	0	MSKCC	GRCh37	11	108200958	108200958	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020747-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			268	103	401	0	ENST00000278616.4:c.7325A>C	p.Gln2442Pro	p.Q2442P	ENST00000278616	NM_000051.3	2442	cAg/cCg																																																																														
RBM10	0	MSKCC	GRCh37	X	47039817	47039817	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020747-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			549	160	843	0	ENST00000329236.7:c.927-1G>T		p.X309_splice	ENST00000329236	NM_001204466.1	309																																																																															
POLE	0	MSKCC	GRCh37	12	133256178	133256178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020747-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			401	153	612	1	ENST00000320574.5:c.483G>T	p.Glu161Asp	p.E161D	ENST00000320574	NM_006231.2	161	gaG/gaT																																																																														
DIS3	0	MSKCC	GRCh37	13	73351559	73351559	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020747-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			250	16	229	0	ENST00000377767.4:c.653G>A	p.Gly218Glu	p.G218E	ENST00000377767	NM_014953.3	218	gGg/gAg																																																																														
PMS1	0	MSKCC	GRCh37	2	190670474	190670474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020747-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			341	72	390	0	ENST00000441310.2:c.412G>T	p.Gly138Cys	p.G138C	ENST00000441310	NM_000534.4	138	Ggt/Tgt																																																																														
ATR	0	MSKCC	GRCh37	3	142204109	142204109	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020747-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			475	106	549	0	ENST00000350721.4:c.6094del	p.Leu2032CysfsTer18	p.L2032Cfs*18	ENST00000350721	NM_001184.3	2032	Ctg/tg																																																																														
FAT1	0	MSKCC	GRCh37	4	187630672	187630672	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020747-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			540	139	643	0	ENST00000441802.2:c.310A>T	p.Asn104Tyr	p.N104Y	ENST00000441802	NM_005245.3	104	Aat/Tat																																																																														
TBX3	0	MSKCC	GRCh37	12	115110091	115110098	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGACAT	GGGGACAT	-			P-0020747-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			693	37	888	0	ENST00000257566.3:c.1780_1787del	p.Met594PhefsTer95	p.M594Ffs*95	ENST00000257566	NM_016569.3	594	ATGTCCCCt/t																																																																														
MDC1	0	MSKCC	GRCh37	6	30675445	30675445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020747-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			482	39	574	0	ENST00000376406.3:c.2911G>T	p.Val971Leu	p.V971L	ENST00000376406	NM_014641.2	971	Gtg/Ttg																																																																														
MED12	0	MSKCC	GRCh37	X	70349018	70349018	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020747-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			682	49	757	0	ENST00000374080.3:c.3530T>A	p.Leu1177His	p.L1177H	ENST00000374080		1177	cTt/cAt																																																																														
NUF2	0	MSKCC	GRCh37	1	163313631	163313632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAC			P-0020751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	70	382	1	ENST00000271452.3:c.779_782dup	p.Val262TyrfsTer6	p.V262Yfs*6	ENST00000271452	NM_145697.2	260	gat/gATACat																																																																														
BIRC3	0	MSKCC	GRCh37	11	102207745	102207745	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	198	676	0	ENST00000263464.3:c.1727T>G	p.Val576Gly	p.V576G	ENST00000263464	NM_001165.4	576	gTa/gGa																																																																														
AKT2	0	MSKCC	GRCh37	19	40748512	40748512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	371	1192	0	ENST00000392038.2:c.370T>C	p.Cys124Arg	p.C124R	ENST00000392038	NM_001626.4	124	Tgt/Cgt																																																																														
ATRX	0	MSKCC	GRCh37	X	76814309	76814309	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0020751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	74	541	0	ENST00000373344.5:c.6335T>G	p.Leu2112Ter	p.L2112*	ENST00000373344	NM_000489.3	2112	tTa/tGa																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858045	152858045	+	synonymous_variant	Silent	SNP	G	G	A			P-0020751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	65	569	0	ENST00000406277.2:c.570C>T	p.Ala190=	p.A190=	ENST00000406277	NM_152274.4	190	gcC/gcT																																																																														
SPEN	0	MSKCC	GRCh37	1	16199400	16199400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	76	527	0	ENST00000375759.3:c.173G>A	p.Ser58Asn	p.S58N	ENST00000375759	NM_015001.2	58	aGt/aAt																																																																														
MCL1	0	MSKCC	GRCh37	1	150551846	150551846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	69	248	1	ENST00000369026.2:c.161G>A	p.Gly54Asp	p.G54D	ENST00000369026	NM_021960.4	54	gGc/gAc																																																																														
NUF2	0	MSKCC	GRCh37	1	163298058	163298058	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	179	861	0	ENST00000271452.3:c.240del	p.Gly81AlafsTer8	p.G81Afs*8	ENST00000271452	NM_145697.2	80	gAa/ga																																																																														
CDC73	0	MSKCC	GRCh37	1	193091355	193091355	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	42	367	2	ENST00000367435.3:c.25C>T	p.Arg9Ter	p.R9*	ENST00000367435	NM_024529.4	9	Cga/Tga																																																																														
IL10	0	MSKCC	GRCh37	1	206942075	206942075	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	45	492	1	ENST00000423557.1:c.445-2A>G		p.X149_splice	ENST00000423557	NM_000572.2	149																																																																															
DIS3	0	MSKCC	GRCh37	13	73349393	73349393	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	117	680	1	ENST00000377767.4:c.943C>T	p.Gln315Ter	p.Q315*	ENST00000377767	NM_014953.3	315	Caa/Taa																																																																														
MGA	0	MSKCC	GRCh37	15	42058666	42058666	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	49	284	0	ENST00000219905.7:c.8386A>T	p.Thr2796Ser	p.T2796S	ENST00000219905	NM_001164273.1	2796	Aca/Tca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845917	72845917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	36	548	0	ENST00000268489.5:c.3550A>G	p.Lys1184Glu	p.K1184E	ENST00000268489	NM_006885.3	1184	Aag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	192	957	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11096987	11096987	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	220	988	1	ENST00000344626.4:c.478C>T	p.Gln160Ter	p.Q160*	ENST00000344626	NM_003072.3	160	Cag/Tag																																																																														
BRD4	0	MSKCC	GRCh37	19	15355547	15355547	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	219	889	1	ENST00000263377.2:c.2185G>T	p.Gly729Trp	p.G729W	ENST00000263377	NM_058243.2	729	Ggg/Tgg																																																																														
UPF1	0	MSKCC	GRCh37	19	18972856	18972856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	82	649	1	ENST00000262803.5:c.2495G>A	p.Arg832His	p.R832H	ENST00000262803	NM_002911.3	832	cGc/cAc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25523082	25523082	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	101	851	1	ENST00000264709.3:c.103A>T	p.Lys35Ter	p.K35*	ENST00000264709	NM_175629.2	35	Aag/Tag																																																																														
ALK	0	MSKCC	GRCh37	2	29519815	29519815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	43	805	0	ENST00000389048.3:c.1756G>T	p.Ala586Ser	p.A586S	ENST00000389048	NM_004304.4	586	Gcc/Tcc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927421	178927422	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCTTCC			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	58	605	0	ENST00000263967.3:c.1187_1192dup	p.Leu396_Pro397dup	p.L396_P397dup	ENST00000263967	NM_006218.2	396	gat/gaTCTTCCt																																																																														
TP63	0	MSKCC	GRCh37	3	189584548	189584548	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	128	579	0	ENST00000264731.3:c.844G>T	p.Gly282Ter	p.G282*	ENST00000264731	NM_003722.4	282	Gga/Tga																																																																														
HLA-A	0	MSKCC	GRCh37	6	29912317	29912323	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTGGC	TGCTGGC	-			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	226	1001	0	ENST00000376809.5:c.936_942del	p.Ala313TrpfsTer7	p.A313Wfs*7	ENST00000376809	NM_002116.7	312	atTGCTGGC/at																																																																														
CARD11	0	MSKCC	GRCh37	7	2953016	2953016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	34	858	0	ENST00000396946.4:c.2924G>T	p.Arg975Leu	p.R975L	ENST00000396946	NM_032415.4	975	cGg/cTg																																																																														
JAK2	0	MSKCC	GRCh37	9	5077551	5077551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	92	584	0	ENST00000381652.3:c.1963A>G	p.Lys655Glu	p.K655E	ENST00000381652	NM_004972.3	655	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	527	715	1	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098973	178098973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	188	352	0	ENST00000397062.3:c.72G>C	p.Trp24Cys	p.W24C	ENST00000397062	NM_006164.4	24	tgG/tgC																																																																														
MTOR	0	MSKCC	GRCh37	1	11186007	11187029	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATTGCGCCATTATACTCCAGCCTGGGCAACAAGAGCAAAACTCTGGCTCAAAAAAAAAAAAAAAAAAAAAAAAAGCGAGAGGCCTCAAAGTGCCACCACAGCACTCAGGCCTCACTAAAACATCCCCCATAAGTAACACTCTACCCCAAGGGAAATTCCAGAGCCCACTTGCTTAACAAATCTCACTGTGAGAATCCACTTGTTCATTTTACACAATCATTTACCACAGAGACTATGATGGTAAAAAAAAAAAGAAAAAAATTTCAAGAGCCAGAAGCCCCCGTTTCAGAGGAGCTAGCACCTTCCCTGCTTGCACCCAGCTGCCTCCTCCCTGGCCTCATCAGTCTCCAACACCTGCCTTCCACTGTTACTTCTCTGCCTTGCATGCCTTTGTCATTCCCTTTATGTGTGATCATGCTTCACATAAGCCCAACTACATGAATGAACTAAGTCCTGAGGACATAATGAGAAATTTGCTTGCCCTCTATTTTCCTCTCAATGAGCATGGGAGAGATGTAGCTATGATAGGTGAGTAGTGGGAATGGCAAGCAGTAATTTCAGAAGAGGGAAGGGGTCTCAGCCAGTGTAGGAGGGAGAAGTGGGTGACAGAAGTGCACAATGGTCCTTACCCATAAGTGTCAATTTCCGGGGCCTCTGCTTGGATGTGATGACTTGCAAAGACGGTGCTATGGACTGAATGCGAATGATTGGCTGGTTGGGGTCATATGTTCCTGGCACAGCCAATTCAAGGTCCCGGCACATCAGAAGTTTTGGGGAAACATATTGCAGCTCTAAGGATGTGAGCTGTAAATAATTACCAAAGGATTTAGTGTTCTGCCTCCAGGGAAGAATTTAAACGCAATTTAAGTATTTTTCAGTGGATTGCTAATAACAATTACTTGTCCCAAAGCAGAAGTAAAACCAGATGCTTTGGAATGAGTGTTAGAACATTCATAGACAGTAAAACAGAAAGGACTATA	AGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATTGCGCCATTATACTCCAGCCTGGGCAACAAGAGCAAAACTCTGGCTCAAAAAAAAAAAAAAAAAAAAAAAAAGCGAGAGGCCTCAAAGTGCCACCACAGCACTCAGGCCTCACTAAAACATCCCCCATAAGTAACACTCTACCCCAAGGGAAATTCCAGAGCCCACTTGCTTAACAAATCTCACTGTGAGAATCCACTTGTTCATTTTACACAATCATTTACCACAGAGACTATGATGGTAAAAAAAAAAAGAAAAAAATTTCAAGAGCCAGAAGCCCCCGTTTCAGAGGAGCTAGCACCTTCCCTGCTTGCACCCAGCTGCCTCCTCCCTGGCCTCATCAGTCTCCAACACCTGCCTTCCACTGTTACTTCTCTGCCTTGCATGCCTTTGTCATTCCCTTTATGTGTGATCATGCTTCACATAAGCCCAACTACATGAATGAACTAAGTCCTGAGGACATAATGAGAAATTTGCTTGCCCTCTATTTTCCTCTCAATGAGCATGGGAGAGATGTAGCTATGATAGGTGAGTAGTGGGAATGGCAAGCAGTAATTTCAGAAGAGGGAAGGGGTCTCAGCCAGTGTAGGAGGGAGAAGTGGGTGACAGAAGTGCACAATGGTCCTTACCCATAAGTGTCAATTTCCGGGGCCTCTGCTTGGATGTGATGACTTGCAAAGACGGTGCTATGGACTGAATGCGAATGATTGGCTGGTTGGGGTCATATGTTCCTGGCACAGCCAATTCAAGGTCCCGGCACATCAGAAGTTTTGGGGAAACATATTGCAGCTCTAAGGATGTGAGCTGTAAATAATTACCAAAGGATTTAGTGTTCTGCCTCCAGGGAAGAATTTAAACGCAATTTAAGTATTTTTCAGTGGATTGCTAATAACAATTACTTGTCCCAAAGCAGAAGTAAAACCAGATGCTTTGGAATGAGTGTTAGAACATTCATAGACAGTAAAACAGAAAGGACTATA	-			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	216	0	0	ENST00000361445.4:c.6351+38_6526+672del		p.X2117_splice	ENST00000361445	NM_004958.3	2117																																																																															
CSF3R	0	MSKCC	GRCh37	1	36932266	36932266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	471	684	0	ENST00000361632.4:c.2203G>A	p.Ala735Thr	p.A735T	ENST00000361632		735	Gca/Aca																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937567	36937690	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCCTCCCAGACCTGTTGGAGTCCTAAGCCCCGGTTTGTAGGGATCTGTTTGGACTGCGGGAGGTGTCGAGGTGGAGGGATGGCCTTCAGAGGGAGTCACCTTCCAGAACAGCTGCACTGTCCT	CGCCTCCCAGACCTGTTGGAGTCCTAAGCCCCGGTTTGTAGGGATCTGTTTGGACTGCGGGAGGTGTCGAGGTGGAGGGATGGCCTTCAGAGGGAGTCACCTTCCAGAACAGCTGCACTGTCCT	-			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	51	279	0	ENST00000361632.4:c.1048_1071+100del		p.X350_splice	ENST00000361632		350																																																																															
KDM5A	0	MSKCC	GRCh37	12	430250	430250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	167	373	0	ENST00000399788.2:c.2452C>T	p.Arg818Trp	p.R818W	ENST00000399788	NM_001042603.1	818	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431871	49431871	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	522	683	0	ENST00000301067.7:c.9268G>T	p.Glu3090Ter	p.E3090*	ENST00000301067	NM_003482.3	3090	Gag/Tag																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665429	138665429	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1510	428	651	0	ENST00000330315.3:c.136C>G	p.Pro46Ala	p.P46A	ENST00000330315	NM_023067.3	46	Ccg/Gcg																																																																														
TAP1	0	MSKCC	GRCh37	6	32821529	32821529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	365	688	0	ENST00000354258.4:c.65C>G	p.Ser22Trp	p.S22W	ENST00000354258	NM_000593.5	22	tCg/tGg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873631	151873631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	202	466	2	ENST00000262189.6:c.8907G>A	p.Met2969Ile	p.M2969I	ENST00000262189	NM_170606.2	2969	atG/atA																																																																														
JAK2	0	MSKCC	GRCh37	9	5090829	5090829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	112	298	0	ENST00000381652.3:c.2977G>A	p.Gly993Arg	p.G993R	ENST00000381652	NM_004972.3	993	Gga/Aga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3831277	3831277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	160	532	0	ENST00000262367.5:c.1604G>T	p.Gly535Val	p.G535V	ENST00000262367	NM_004380.2	535	gGa/gTa																																																																														
EPAS1	0	MSKCC	GRCh37	2	46607376	46607376	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	204	749	0	ENST00000263734.3:c.1565A>T	p.Asn522Ile	p.N522I	ENST00000263734	NM_001430.4	522	aAt/aTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577054	7577054	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	703	1375	1	ENST00000269305.4:c.884delC	p.Pro295LeufsTer50	p.P295Lfs*50	ENST00000269305	NM_001126112.2	295	cCt/ct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420464	49420464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	559	1072	1	ENST00000301067.7:c.15285C>G	p.Cys5095Trp	p.C5095W	ENST00000301067	NM_003482.3	5095	tgC/tgG																																																																														
APC	0	MSKCC	GRCh37	5	112175921	112175922	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TG			P-0020812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	344	451	0	ENST00000257430.4:c.4630_4631delinsTG	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	GAa/TGa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			689	128	792	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600408	10600408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			640	53	859	1	ENST00000171111.5:c.1447C>T	p.Arg483Cys	p.R483C	ENST00000171111	NM_203500.1	483	Cgc/Tgc																																																																														
ATM	0	MSKCC	GRCh37	11	108139232	108139232	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			728	67	863	1	ENST00000278616.4:c.2734C>T	p.Gln912Ter	p.Q912*	ENST00000278616	NM_000051.3	912	Cag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108213995	108213995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	59	549	3	ENST00000278616.4:c.8315G>T	p.Gly2772Val	p.G2772V	ENST00000278616	NM_000051.3	2772	gGa/gTa																																																																														
STK11	0	MSKCC	GRCh37	19	1219368	1219368	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	77	784	2	ENST00000326873.7:c.421del	p.Asp141ThrfsTer20	p.D141Tfs*20	ENST00000326873	NM_000455.4	140	ctG/ct																																																																														
FAT1	0	MSKCC	GRCh37	4	187541457	187541457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	43	591	0	ENST00000441802.2:c.6283G>C	p.Glu2095Gln	p.E2095Q	ENST00000441802	NM_005245.3	2095	Gag/Cag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971149	21971192	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCT	GGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCT	-			P-0020823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	29	658	0	ENST00000304494.5:c.166_209del	p.Ser56GlnfsTer49	p.S56Qfs*49	ENST00000304494	NM_000077.4	56	AGCGCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCGGAGCCc/c																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971149	21971192	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCT	GGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCT	-			P-0020823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	29	658	0	ENST00000304494.5:c.166_209del	p.Ser56GlnfsTer49	p.S56Qfs*49	ENST00000304494	NM_000077.4	56	AGCGCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCGGAGCCc/c																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971149	21971192	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCT	GGCTCCGCGCCGTGGAGCAGCAGCAGCTCCGCCACTCGGGCGCT	-			P-0020823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	29	658	0	ENST00000304494.5:c.166_209del	p.Ser56GlnfsTer49	p.S56Qfs*49	ENST00000304494	NM_000077.4	56	AGCGCCCGAGTGGCGGAGCTGCTGCTGCTCCACGGCGCGGAGCCc/c																																																																														
RBM10	0	MSKCC	GRCh37	X	47044578	47044579	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			686	70	987	0	ENST00000329236.7:c.1842dup	p.Gly615TrpfsTer27	p.G615Wfs*27	ENST00000329236	NM_001204466.1	614	gct/gcTt																																																																														
ATRX	0	MSKCC	GRCh37	X	76937067	76937067	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020823-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			597	66	653	0	ENST00000373344.5:c.3681G>T	p.Lys1227Asn	p.K1227N	ENST00000373344	NM_000489.3	1227	aaG/aaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	115	786	2				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	194	822	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	11	138	1	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44913136	44913136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	129	1054	1	ENST00000377967.4:c.811C>T	p.Gln271Ter	p.Q271*	ENST00000377967	NM_021140.2	271	Cag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47155453	47155453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	113	717	0	ENST00000409792.3:c.4628G>A	p.Arg1543Gln	p.R1543Q	ENST00000409792	NM_014159.6	1543	cGg/cAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106862	27106862	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	106	738	0	ENST00000324856.7:c.6473del	p.Arg2158GlnfsTer42	p.R2158Qfs*42	ENST00000324856	NM_006015.4	2158	cGa/ca																																																																														
SESN2	0	MSKCC	GRCh37	1	28600632	28600632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	185	1062	3	ENST00000253063.3:c.983G>A	p.Arg328Gln	p.R328Q	ENST00000253063	NM_031459.4	328	cGg/cAg																																																																														
ARID2	0	MSKCC	GRCh37	12	46298716	46298716	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	77	536	0	ENST00000334344.6:c.5364-1G>C		p.X1788_splice	ENST00000334344	NM_152641.2	1788																																																																															
CREBBP	0	MSKCC	GRCh37	16	3781317	3781317	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1390	151	1248	0	ENST00000262367.5:c.5048G>C	p.Arg1683Pro	p.R1683P	ENST00000262367	NM_004380.2	1683	cGc/cCc																																																																														
FAT1	0	MSKCC	GRCh37	4	187524150	187524150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	107	777	1	ENST00000441802.2:c.11389G>A	p.Asp3797Asn	p.D3797N	ENST00000441802	NM_005245.3	3797	Gat/Aat																																																																														
FAT1	0	MSKCC	GRCh37	4	187525071	187525071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	116	761	0	ENST00000441802.2:c.10609G>A	p.Glu3537Lys	p.E3537K	ENST00000441802	NM_005245.3	3537	Gag/Aag																																																																														
PIM1	0	MSKCC	GRCh37	6	37138627	37138627	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	136	1090	0	ENST00000373509.5:c.161C>G	p.Ser54Ter	p.S54*	ENST00000373509	NM_002648.3	54	tCa/tGa																																																																														
PREX2	0	MSKCC	GRCh37	8	69104607	69104607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1196	182	974	2	ENST00000288368.4:c.4451G>A	p.Arg1484Gln	p.R1484Q	ENST00000288368	NM_024870.2	1484	cGa/cAa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44913181	44913248	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTGGTATTTCCTCGGAAGGTGAGACTTACCAGACATTTATGTTTGATTTTGTCTATTCCAGCTAAG	TCCTGGTATTTCCTCGGAAGGTGAGACTTACCAGACATTTATGTTTGATTTTGTCTATTCCAGCTAAG	GAA			P-0020832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	78	913	7	ENST00000377967.4:c.856_875+48delinsGAA		p.X286_splice	ENST00000377967	NM_021140.2	286																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	263	905	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0020842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	793	846	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115955	8115956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0020842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	300	688	0	ENST00000346208.3:c.1304_1305dupCC	p.Ser436ProfsTer40	p.S436Pfs*40	ENST00000346208		434	cac/caCCc																																																																														
TET1	0	MSKCC	GRCh37	10	70406645	70406645	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	269	1111	0	ENST00000373644.4:c.4159A>G	p.Thr1387Ala	p.T1387A	ENST00000373644	NM_030625.2	1387	Aca/Gca																																																																														
ERBB3	0	MSKCC	GRCh37	12	56486844	56486844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	599	802	0	ENST00000267101.3:c.1258G>A	p.Gly420Ser	p.G420S	ENST00000267101	NM_001982.3	420	Ggc/Agc																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49280957	49280957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	259	822	0	ENST00000282018.3:c.4G>C	p.Glu2Gln	p.E2Q	ENST00000282018	NM_020377.2	2	Gag/Cag																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472605	88472605	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	221	690	0	ENST00000360948.2:c.1950G>C	p.Glu650Asp	p.E650D	ENST00000360948	NM_001012338.2	650	gaG/gaC																																																																														
PTPRT	0	MSKCC	GRCh37	20	41408885	41408885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020842-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	319	740	0	ENST00000373198.4:c.541G>A	p.Glu181Lys	p.E181K	ENST00000373198	NM_133170.3	181	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	336	692	4	ENST00000263967.3:c.3012G>T	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atT																																																																														
RASA1	0	MSKCC	GRCh37	5	86629108	86629108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	245	450	0	ENST00000274376.6:c.853C>T	p.Arg285Ter	p.R285*	ENST00000274376	NM_002890.2	285	Cga/Tga																																																																														
MTOR	0	MSKCC	GRCh37	1	11264748	11264748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	138	895	0	ENST00000361445.4:c.3814G>T	p.Ala1272Ser	p.A1272S	ENST00000361445	NM_004958.3	1272	Gcc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7574012	7574013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	539	888	0	ENST00000269305.4:c.1014dup	p.Glu339ArgfsTer8	p.E339Rfs*8	ENST00000269305	NM_001126112.2	338	-/C																																																																														
NF1	0	MSKCC	GRCh37	17	29490300	29490306	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCATG	CAGCATG	-			P-0020865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	368	672	0	ENST00000358273.4:c.389_395del	p.His130LeufsTer33	p.H130Lfs*33	ENST00000358273	NM_001042492.2	129	CAGCATGca/ca																																																																														
FLT4	0	MSKCC	GRCh37	5	180057304	180057304	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140347743		P-0020865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	222	966	3	ENST00000261937.6:c.434C>T	p.Thr145Met	p.T145M	ENST00000261937	NM_182925.4	145	aCg/aTg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0020875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	169	617	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0020875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	86	477	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0020875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	108	749	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112174061	112174061	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	79	506	1	ENST00000257430.4:c.2770A>T	p.Arg924Ter	p.R924*	ENST00000257430	NM_000038.5	924	Aga/Tga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920435	114920435	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	199	717	1	ENST00000543371.1:c.1376G>A	p.Trp459Ter	p.W459*	ENST00000543371	NM_001198531.1	459	tGg/tAg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18699324	18699324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	70	653	0	ENST00000266497.5:c.3425G>A	p.Arg1142His	p.R1142H	ENST00000266497		1142	cGt/cAt																																																																														
NCOA3	0	MSKCC	GRCh37	20	46276031	46276031	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146235035		P-0020875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	235	756	0	ENST00000371998.3:c.3467G>A	p.Arg1156Gln	p.R1156Q	ENST00000371998		1156	cGa/cAa																																																																														
XIAP	0	MSKCC	GRCh37	X	123034395	123034395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	70	704	0	ENST00000355640.3:c.1152C>G	p.Phe384Leu	p.F384L	ENST00000355640		384	ttC/ttG																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	341	826	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
AXIN1	0	MSKCC	GRCh37	16	396740	396740	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	130	840	0	ENST00000262320.3:c.286C>T	p.Gln96Ter	p.Q96*	ENST00000262320	NM_003502.3	96	Caa/Taa																																																																														
RAD50	0	MSKCC	GRCh37	5	131931471	131931471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	117	505	0	ENST00000265335.6:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000265335		726	Cgt/Tgt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862838	9862838	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	296	889	0	ENST00000330684.3:c.2465A>T	p.Tyr822Phe	p.Y822F	ENST00000330684	NM_001134407.1	822	tAc/tTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187531033	187531033	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	164	763	0	ENST00000441802.2:c.9990T>G	p.Asp3330Glu	p.D3330E	ENST00000441802	NM_005245.3	3330	gaT/gaG																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974726	21974733	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCCAG	GCCTCCAG	-			P-0020903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	188	536	0	ENST00000304494.5:c.94_101del	p.Leu32GlyfsTer9	p.L32Gfs*9	ENST00000304494	NM_000077.4	32	CTGGAGGCg/g																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974726	21974733	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTCCAG	GCCTCCAG	-			P-0020903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	188	536	0	ENST00000304494.5:c.94_101del	p.Leu32GlyfsTer9	p.L32Gfs*9	ENST00000304494	NM_000077.4	32	CTGGAGGCg/g																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	118	607	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	246	869	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	385	1015	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	190	1130	1	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																																																														
KDR	0	MSKCC	GRCh37	4	55968633	55968633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200338299		P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	161	887	2	ENST00000263923.4:c.2030C>T	p.Thr677Met	p.T677M	ENST00000263923	NM_002253.2	677	aCg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112174349	112174349	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	59	404	1	ENST00000257430.4:c.3058G>T	p.Glu1020Ter	p.E1020*	ENST00000257430	NM_000038.5	1020	Gaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112175608	112175608	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	93	464	0	ENST00000257430.4:c.4317del	p.Pro1440HisfsTer33	p.P1440Hfs*33	ENST00000257430	NM_000038.5	1439	ccT/cc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3830766	3830767	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	140	722	0	ENST00000262367.5:c.1789dup	p.Thr597AsnfsTer11	p.T597Nfs*11	ENST00000262367	NM_004380.2	597	act/aAct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	53	807	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78866590	78866590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	91	821	3	ENST00000306801.3:c.2163C>A	p.Ser721Arg	p.S721R	ENST00000306801	NM_020761.2	721	agC/agA																																																																														
PLK2	0	MSKCC	GRCh37	5	57751531	57751531	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55645589		P-0020962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	54	461	1	ENST00000274289.3:c.1460C>T	p.Pro487Leu	p.P487L	ENST00000274289	NM_006622.3	487	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0020992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	40	803	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																														
PRDM1	0	MSKCC	GRCh37	6	106552957	106552957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	53	733	1	ENST00000369096.4:c.922G>A	p.Asp308Asn	p.D308N	ENST00000369096	NM_001198.3	308	Gac/Aac																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	189	991	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473780	67473780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	70	766	1	ENST00000327367.4:c.860G>A	p.Arg287Gln	p.R287Q	ENST00000327367	NM_005902.3	287	cGg/cAg																																																																														
PTPN11	0	MSKCC	GRCh37	12	112888267	112888267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	120	800	0	ENST00000351677.2:c.283G>A	p.Val95Ile	p.V95I	ENST00000351677	NM_002834.3	95	Gtc/Atc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67358596	67358596	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	107	822	0	ENST00000327367.4:c.104T>C	p.Val35Ala	p.V35A	ENST00000327367	NM_005902.3	35	gTc/gCc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67477070	67477070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	82	637	0	ENST00000327367.4:c.877G>A	p.Gly293Ser	p.G293S	ENST00000327367	NM_005902.3	293	Ggc/Agc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45374909	45374909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	186	902	0	ENST00000262160.6:c.934T>C	p.Cys312Arg	p.C312R	ENST00000262160	NM_005901.5	312	Tgc/Cgc																																																																														
TP53	0	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	367	896	1	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105715	27105717	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	83	435	0	ENST00000324856.7:c.5334_5336del	p.Glu1780del	p.E1780del	ENST00000324856	NM_006015.4	1776	GAA/-																																																																														
RET	0	MSKCC	GRCh37	10	43595960	43595960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	258	1120	3	ENST00000355710.3:c.127G>A	p.Asp43Asn	p.D43N	ENST00000355710	NM_020975.4	43	Gac/Aac																																																																														
ATM	0	MSKCC	GRCh37	11	108117747	108117747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	78	593	0	ENST00000278616.4:c.958G>T	p.Val320Leu	p.V320L	ENST00000278616	NM_000051.3	320	Gtg/Ttg																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281359	49281359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	273	1177	3	ENST00000282018.3:c.406C>T	p.Arg136Cys	p.R136C	ENST00000282018	NM_020377.2	136	Cgt/Tgt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350936	89350936	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1304	225	1335	0	ENST00000301030.4:c.2014A>G	p.Ile672Val	p.I672V	ENST00000301030	NM_001256183.1	672	Ata/Gta																																																																														
BRCA1	0	MSKCC	GRCh37	17	41247888	41247888	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	65	847	0	ENST00000357654.3:c.645A>T	p.Glu215Asp	p.E215D	ENST00000357654	NM_007294.3	215	gaA/gaT																																																																														
APC	0	MSKCC	GRCh37	5	112174384	112174384	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	101	365	0	ENST00000257430.4:c.3093T>A	p.Tyr1031Ter	p.Y1031*	ENST00000257430	NM_000038.5	1031	taT/taA																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860177	151860219	+	frameshift_variant	Frame_Shift_Del	DEL	TGAATTAATTGATCCTTGTTGTATATTCTGCTGCTGTAAAACC	TGAATTAATTGATCCTTGTTGTATATTCTGCTGCTGTAAAACC	-			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	57	677	0	ENST00000262189.6:c.10443_10485del	p.Gln3481HisfsTer16	p.Q3481Hfs*16	ENST00000262189	NM_170606.2	3481	caGGTTTTACAGCAGCAGAATATACAACAAGGATCAATTAATTCA/ca																																																																														
TEK	0	MSKCC	GRCh37	9	27202925	27202925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	177	756	0	ENST00000380036.4:c.2017C>A	p.Arg673Ser	p.R673S	ENST00000380036	NM_000459.3	673	Cgt/Agt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	78	775	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0021043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	136	590	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0021043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	125	755	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212812155	212812155	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0021043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	18	409	0	ENST00000342788.4:c.421G>T	p.Glu141Ter	p.E141*	ENST00000342788	NM_005235.2	141	Gaa/Taa																																																																														
NF1	0	MSKCC	GRCh37	17	29557909	29557909	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	28	130	0	ENST00000358273.4:c.3163C>T	p.Gln1055Ter	p.Q1055*	ENST00000358273	NM_001042492.2	1055	Caa/Taa																																																																														
SYK	0	MSKCC	GRCh37	9	93637062	93637062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	32	750	0	ENST00000375746.1:c.1112C>T	p.Thr371Met	p.T371M	ENST00000375746	NM_001174167.1	371	aCg/aTg																																																																														
RNF43	0	MSKCC	GRCh37	17	56440741	56440741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	191	627	0	ENST00000407977.2:c.477G>A	p.Trp159Ter	p.W159*	ENST00000407977		159	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0021063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	224	650	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
CDC42	0	MSKCC	GRCh37	1	22412959	22412959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	49	230	0	ENST00000344548.3:c.206C>T	p.Pro69Leu	p.P69L	ENST00000344548	NM_001039802.1	69	cCg/cTg																																																																														
RHOA	0	MSKCC	GRCh37	3	49405956	49405956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	266	750	2	ENST00000418115.1:c.182C>T	p.Ala61Val	p.A61V	ENST00000418115	NM_001664.2	61	gCt/gTt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291801	15291801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	298	1124	1	ENST00000263388.2:c.2965C>A	p.Leu989Ile	p.L989I	ENST00000263388	NM_000435.2	989	Ctc/Atc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247157	153247157	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0021167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	175	328	0	ENST00000281708.4:c.1644+1G>A		p.X548_splice	ENST00000281708	NM_033632.3	548																																																																															
KMT2C	0	MSKCC	GRCh37	7	151842339	151842339	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0021167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	181	297	0	ENST00000262189.6:c.14073C>G	p.Tyr4691Ter	p.Y4691*	ENST00000262189	NM_170606.2	4691	taC/taG																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945447	151945448	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	587	1169	0	ENST00000262189.6:c.2071dup	p.Ser691PhefsTer14	p.S691Ffs*14	ENST00000262189	NM_170606.2	691	tct/tTct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0021190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	54	1030	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
RAD51B	0	MSKCC	GRCh37	14	68353884	68353884	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	57	840	0	ENST00000487270.1:c.719C>G	p.Ser240Cys	p.S240C	ENST00000487270	NM_133509.3	240	tCc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	105	1075	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692793	89692793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	29	761	0	ENST00000371953.3:c.277C>T	p.His93Tyr	p.H93Y	ENST00000371953	NM_000314.4	93	Cat/Tat																																																																														
PIM1	0	MSKCC	GRCh37	6	37138642	37138642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	88	951	0	ENST00000373509.5:c.176C>G	p.Ser59Cys	p.S59C	ENST00000373509	NM_002648.3	59	tCc/tGc																																																																														
CHEK1	0	MSKCC	GRCh37	11	125503082	125503082	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	87	727	0	ENST00000428830.2:c.449G>T	p.Gly150Val	p.G150V	ENST00000428830	NM_001114121.2	150	gGc/gTc																																																																														
IRS2	0	MSKCC	GRCh37	13	110434548	110434548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	54	900	0	ENST00000375856.3:c.3853G>T	p.Gly1285Cys	p.G1285C	ENST00000375856	NM_003749.2	1285	Ggc/Tgc																																																																														
BLM	0	MSKCC	GRCh37	15	91303921	91303921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	82	1050	0	ENST00000355112.3:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000355112	NM_000057.2	440	Gag/Aag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348008	89348008	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	71	1253	2	ENST00000301030.4:c.4942C>G	p.Pro1648Ala	p.P1648A	ENST00000301030	NM_001256183.1	1648	Cca/Gca																																																																														
BRIP1	0	MSKCC	GRCh37	17	59886070	59886070	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	77	988	1	ENST00000259008.2:c.676A>C	p.Ser226Arg	p.S226R	ENST00000259008	NM_032043.2	226	Agt/Cgt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41514481	41514481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	181	1072	0	ENST00000373198.4:c.180G>T	p.Trp60Cys	p.W60C	ENST00000373198	NM_133170.3	60	tgG/tgT																																																																														
PBRM1	0	MSKCC	GRCh37	3	52651475	52651475	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	121	1130	0	ENST00000394830.3:c.1621A>T	p.Arg541Ter	p.R541*	ENST00000394830	NM_018313.4	541	Aga/Tga																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851601	134851601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	60	993	0	ENST00000398015.3:c.1007C>A	p.Thr336Lys	p.T336K	ENST00000398015	NM_004441.4	336	aCg/aAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0021225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	26	650	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0021225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	35	466	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55																																																																															
ERCC4	0	MSKCC	GRCh37	16	14042018	14042018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	62	704	0	ENST00000311895.7:c.2565G>A	p.Met855Ile	p.M855I	ENST00000311895	NM_005236.2	855	atG/atA																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	534	772	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
POLE	0	MSKCC	GRCh37	12	133218876	133218876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	274	866	2	ENST00000320574.5:c.5060C>A	p.Ser1687Tyr	p.S1687Y	ENST00000320574	NM_006231.2	1687	tCc/tAc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32900635	32900635	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	161	596	0	ENST00000380152.3:c.517-1G>C		p.X173_splice	ENST00000380152		173																																																																															
GRIN2A	0	MSKCC	GRCh37	16	10031863	10031863	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	248	925	0	ENST00000330684.3:c.960C>A	p.Cys320Ter	p.C320*	ENST00000330684	NM_001134407.1	320	tgC/tgA																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610172	10610172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	281	856	1	ENST00000171111.5:c.538G>A	p.Asp180Asn	p.D180N	ENST00000171111	NM_203500.1	180	Gac/Aac																																																																														
EPCAM	0	MSKCC	GRCh37	2	47596667	47596667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	176	505	0	ENST00000263735.4:c.23C>G	p.Ala8Gly	p.A8G	ENST00000263735	NM_002354.2	8	gCg/gGg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143003339	143003339	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	200	764	0	ENST00000262992.4:c.2488-1G>T		p.X830_splice	ENST00000262992	NM_001101669.1	830																																																																															
PARK2	0	MSKCC	GRCh37	6	161969933	161969933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	198	741	2	ENST00000366898.1:c.1036G>T	p.Asp346Tyr	p.D346Y	ENST00000366898	NM_004562.2	346	Gac/Tac																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	130	850	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
BARD1	0	MSKCC	GRCh37	2	215595221	215595221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	85	427	0	ENST00000260947.4:c.1915T>C	p.Cys639Arg	p.C639R	ENST00000260947	NM_000465.2	639	Tgt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	143	877	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	180	671	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	0	MSKCC	GRCh37	5	112175248	112175249	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	79	320	0	ENST00000257430.4:c.3959_3960delTG	p.Val1320GlufsTer11	p.V1320Efs*11	ENST00000257430	NM_000038.5	1319	ccTGtg/cctg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	111	566	0	ENST00000342988.3:c.1529G>A	p.Gly510Glu	p.G510E	ENST00000342988	NM_005359.5	510	gGa/gAa																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166238	118166238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	27	397	1	ENST00000369448.3:c.748C>T	p.Leu250Phe	p.L250F	ENST00000369448	NM_017709.3	250	Ctt/Ttt																																																																														
RFWD2	0	MSKCC	GRCh37	1	175996741	175996741	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	66	642	0	ENST00000367669.3:c.1696T>A	p.Ser566Thr	p.S566T	ENST00000367669	NM_022457.5	566	Tct/Act																																																																														
SOX9	0	MSKCC	GRCh37	17	70117959	70117959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	43	306	0	ENST00000245479.2:c.427T>C	p.Trp143Arg	p.W143R	ENST00000245479	NM_000346.3	143	Tgg/Cgg																																																																														
DAXX	0	MSKCC	GRCh37	6	33288642	33288642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	22	489	0	ENST00000374542.5:c.910C>T	p.Leu304Phe	p.L304F	ENST00000374542	NM_001141970.1	304	Ctc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	57	766	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986753	36986754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	12	116	0	ENST00000354822.5:c.935dup	p.Gln313ThrfsTer126	p.Q313Tfs*126	ENST00000354822	NM_001079668.2	312	cta/ctTa																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987070	36987070	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	56	915	0	ENST00000354822.5:c.619G>T	p.Glu207Ter	p.E207*	ENST00000354822	NM_001079668.2	207	Gag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	36	913	2	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at																																																																														
STK11	0	MSKCC	GRCh37	19	1207136	1207138	+	frameshift_variant	Frame_Shift_Del	DEL	GGG	GGG	CC			P-0021284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	53	1076	3	ENST00000326873.7:c.224_226delinsCC	p.Arg75ThrfsTer21	p.R75Tfs*21	ENST00000326873	NM_000455.4	75	aGGGcc/aCCcc																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	92	773	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	196	770	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27094386	27094386	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	269	561	0	ENST00000324856.7:c.3094G>T	p.Glu1032Ter	p.E1032*	ENST00000324856	NM_006015.4	1032	Gag/Tag																																																																														
SDHB	0	MSKCC	GRCh37	1	17355135	17355135	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	299	566	0	ENST00000375499.3:c.383A>C	p.Tyr128Ser	p.Y128S	ENST00000375499	NM_003000.2	128	tAc/tCc																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944694	31944694	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	17	135	0	ENST00000340398.3:c.407A>C	p.Ter136SerextTer21	p.*136Sext*21	ENST00000340398	NM_001013699.2	136	tAa/tCa																																																																														
TBX3	0	MSKCC	GRCh37	12	115112088	115112088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	65	902	1	ENST00000257566.3:c.1652C>A	p.Thr551Asn	p.T551N	ENST00000257566	NM_016569.3	551	aCc/aAc																																																																														
MSI1	0	MSKCC	GRCh37	12	120789156	120789156	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	116	521	1	ENST00000257552.2:c.781G>T	p.Glu261Ter	p.E261*	ENST00000257552	NM_002442.3	261	Gag/Tag																																																																														
POLE	0	MSKCC	GRCh37	12	133240982	133240982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	59	711	0	ENST00000320574.5:c.2535G>T	p.Gln845His	p.Q845H	ENST00000320574	NM_006231.2	845	caG/caT																																																																														
FLT3	0	MSKCC	GRCh37	13	28609664	28609664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	177	585	1	ENST00000241453.7:c.1565C>A	p.Thr522Lys	p.T522K	ENST00000241453	NM_004119.2	522	aCa/aAa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5231611	5231612	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	44	187	0	ENST00000357368.4:c.1864_1865del	p.Pro622SerfsTer4	p.P622Sfs*4	ENST00000357368	NM_002850.3	622	CCt/t																																																																														
IRS1	0	MSKCC	GRCh37	2	227660615	227660615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	68	616	1	ENST00000305123.5:c.2840G>A	p.Gly947Glu	p.G947E	ENST00000305123	NM_005544.2	947	gGg/gAg																																																																														
PAK7	0	MSKCC	GRCh37	20	9523241	9523241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	181	644	0	ENST00000353224.5:c.1996C>A	p.Leu666Ile	p.L666I	ENST00000353224	NM_177990.2	666	Cta/Ata																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385137	41385137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	224	759	1	ENST00000373198.4:c.824C>A	p.Ser275Tyr	p.S275Y	ENST00000373198	NM_133170.3	275	tCt/tAt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419850	41419850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	98	403	0	ENST00000373198.4:c.471G>T	p.Trp157Cys	p.W157C	ENST00000373198	NM_133170.3	157	tgG/tgT																																																																														
U2AF1	0	MSKCC	GRCh37	21	44514823	44514823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	166	565	0	ENST00000291552.4:c.424G>T	p.Ala142Ser	p.A142S	ENST00000291552	NM_006758.2	142	Gcc/Tcc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851791	134851791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	47	696	0	ENST00000398015.3:c.1197C>A	p.His399Gln	p.H399Q	ENST00000398015	NM_004441.4	399	caC/caA																																																																														
SDHA	0	MSKCC	GRCh37	5	233631	233631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	68	262	0	ENST00000264932.6:c.935G>T	p.Arg312Leu	p.R312L	ENST00000264932	NM_004168.2	312	cGt/cTt																																																																														
RAD50	0	MSKCC	GRCh37	5	131977979	131977979	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	135	488	0	ENST00000265335.6:c.3862A>G	p.Arg1288Gly	p.R1288G	ENST00000265335		1288	Agg/Ggg																																																																														
MDC1	0	MSKCC	GRCh37	6	30672288	30672288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	189	764	1	ENST00000376406.3:c.4672G>T	p.Gly1558Cys	p.G1558C	ENST00000376406	NM_014641.2	1558	Ggc/Tgc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32182009	32182009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	85	813	2	ENST00000375023.3:c.2045G>A	p.Gly682Asp	p.G682D	ENST00000375023	NM_004557.3	682	gGt/gAt																																																																														
PIM1	0	MSKCC	GRCh37	6	37141746	37141746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	87	603	0	ENST00000373509.5:c.821G>T	p.Arg274Ile	p.R274I	ENST00000373509	NM_002648.3	274	aGa/aTa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8375991	8375991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	141	356	0	ENST00000356435.5:c.4606C>A	p.Arg1536Ser	p.R1536S	ENST00000356435		1536	Cgt/Agt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0021294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	446	1006	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385152	41385152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	114	943	5	ENST00000373198.4:c.809G>A	p.Arg270His	p.R270H	ENST00000373198	NM_133170.3	270	cGc/cAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831895	72831896	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTA			P-0021294-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	433	1100	0	ENST00000268489.5:c.4682_4685dup	p.His1563SerfsTer11	p.H1563Sfs*11	ENST00000268489	NM_006885.3	1562	gta/gtTAGTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0021322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	123	534	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55143660	55143660	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0021322-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	35	327	0	ENST00000257290.5:c.1891+1del		p.X631_splice	ENST00000257290	NM_006206.4	631																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	87	960	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10597402	10597402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	147	1118	1	ENST00000171111.5:c.1801C>T	p.Arg601Trp	p.R601W	ENST00000171111	NM_203500.1	601	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	119	882	2	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
FUBP1	0	MSKCC	GRCh37	1	78414944	78414944	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	45	587	0	ENST00000370768.2:c.1822C>T	p.Gln608Ter	p.Q608*	ENST00000370768	NM_003902.3	608	Cag/Tag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120471665	120471665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	46	623	0	ENST00000256646.2:c.3826G>A	p.Glu1276Lys	p.E1276K	ENST00000256646	NM_024408.3	1276	Gag/Aag																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724445	112724445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	90	863	0	ENST00000369452.4:c.329G>A	p.Arg110Lys	p.R110K	ENST00000369452	NM_007373.3	110	aGa/aAa																																																																														
PALB2	0	MSKCC	GRCh37	16	23646846	23646846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	79	996	0	ENST00000261584.4:c.1021G>A	p.Glu341Lys	p.E341K	ENST00000261584	NM_024675.3	341	Gaa/Aaa																																																																														
MSI2	0	MSKCC	GRCh37	17	55704606	55704606	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	165	1016	0	ENST00000284073.2:c.670del	p.Ala224ArgfsTer76	p.A224Rfs*76	ENST00000284073	NM_138962.2	223	gtG/gt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023307	31023307	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	81	709	1	ENST00000375687.4:c.2792A>T	p.Glu931Val	p.E931V	ENST00000375687	NM_015338.5	931	gAg/gTg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851787	134851787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	78	838	0	ENST00000398015.3:c.1193C>A	p.Ala398Asp	p.A398D	ENST00000398015	NM_004441.4	398	gCc/gAc																																																																														
ATR	0	MSKCC	GRCh37	3	142217532	142217532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	70	739	0	ENST00000350721.4:c.5465C>T	p.Ser1822Leu	p.S1822L	ENST00000350721	NM_001184.3	1822	tCa/tTa																																																																														
SOX2	0	MSKCC	GRCh37	3	181430807	181430807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	67	1097	0	ENST00000325404.1:c.659C>G	p.Ser220Trp	p.S220W	ENST00000325404	NM_003106.3	220	tCg/tGg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280121	66280121	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs201024355		P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	29	578	0	ENST00000273854.3:c.1568C>A	p.Thr523Lys	p.T523K	ENST00000273854	NM_004439.5	523	aCa/aAa																																																																														
IL7R	0	MSKCC	GRCh37	5	35876315	35876315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	72	647	0	ENST00000303115.3:c.1107C>G	p.Cys369Trp	p.C369W	ENST00000303115	NM_002185.3	369	tgC/tgG																																																																														
APC	0	MSKCC	GRCh37	5	112173828	112173828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	30	472	0	ENST00000257430.4:c.2537C>A	p.Ser846Tyr	p.S846Y	ENST00000257430	NM_000038.5	846	tCt/tAt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32180340	32180340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	104	968	3	ENST00000375023.3:c.2591C>T	p.Pro864Leu	p.P864L	ENST00000375023	NM_004557.3	864	cCc/cTc																																																																														
HGF	0	MSKCC	GRCh37	7	81392173	81392173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	47	485	0	ENST00000222390.5:c.104G>T	p.Arg35Ile	p.R35I	ENST00000222390	NM_000601.4	35	aGa/aTa																																																																														
EZH2	0	MSKCC	GRCh37	7	148514388	148514388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	114	807	0	ENST00000320356.2:c.1336A>G	p.Arg446Gly	p.R446G	ENST00000320356	NM_004456.4	446	Aga/Gga																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	440	1001	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	363	780	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434363	121434363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	344	941	0	ENST00000257555.6:c.1127C>A	p.Pro376His	p.P376H	ENST00000257555		376	cCc/cAc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89335055	89335055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	222	480	0	ENST00000301030.4:c.7823G>A	p.Arg2608Gln	p.R2608Q	ENST00000301030	NM_001256183.1	2608	cGg/cAg																																																																														
ETV1	0	MSKCC	GRCh37	7	13946178	13946178	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	359	912	0	ENST00000405192.2:c.918C>A	p.Tyr306Ter	p.Y306*	ENST00000405192	NM_001163147.1	306	taC/taA																																																																														
XIAP	0	MSKCC	GRCh37	X	123020291	123020291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	363	435	1	ENST00000355640.3:c.779C>T	p.Pro260Leu	p.P260L	ENST00000355640		260	cCa/cTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0021345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	25	464	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376521	118376522	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	73	504	1	ENST00000534358.1:c.9915dup	p.Pro3306ThrfsTer22	p.P3306Tfs*22	ENST00000534358	NM_005933.3	3305	tta/ttAa																																																																														
EP300	0	MSKCC	GRCh37	22	41553291	41553291	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	206	959	1	ENST00000263253.7:c.3380A>G	p.Asn1127Ser	p.N1127S	ENST00000263253	NM_001429.3	1127	aAt/aGt																																																																														
TET1	0	MSKCC	GRCh37	10	70450634	70450634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	305	656	0	ENST00000373644.4:c.5474C>T	p.Ser1825Leu	p.S1825L	ENST00000373644	NM_030625.2	1825	tCa/tTa																																																																														
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	819	899	1	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	1028	599	2	ENST00000288602.6:c.1803A>C	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaC																																																																														
TSHR	0	MSKCC	GRCh37	14	81610028	81610028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	322	433	0	ENST00000298171.2:c.1626G>A	p.Met542Ile	p.M542I	ENST00000298171	NM_000369.2	542	atG/atA																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576121	88576122	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	959	986	1	ENST00000360948.2:c.1551_1552delinsAA	p.Phe517_Arg518delinsLeuSer	p.F517_R518delinsLS	ENST00000360948	NM_001012338.2	517	ttCCgt/ttAAgt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610279	10610279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	1045	1094	1	ENST00000171111.5:c.431C>T	p.Ser144Phe	p.S144F	ENST00000171111	NM_203500.1	144	tCc/tTc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499433	89499433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	580	664	1	ENST00000336596.2:c.2603G>A	p.Arg868Lys	p.R868K	ENST00000336596	NM_005233.5	868	aGa/aAa																																																																														
TET2	0	MSKCC	GRCh37	4	106158106	106158193	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAAAAAGGTAACTAAGCAAGAGAATCCACCTGCAAGCTGTGATAATGTGCAGCAAAAGAGCATCATTGAGACCATGGAGCAGCATC	TGGAAAAAGGTAACTAAGCAAGAGAATCCACCTGCAAGCTGTGATAATGTGCAGCAAAAGAGCATCATTGAGACCATGGAGCAGCATC	-			P-0021349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	180	353	0	ENST00000380013.4:c.3009_3096del	p.Trp1003Ter	p.W1003*	ENST00000380013	NM_001127208.2	1003	TGGAAAAAGGTAACTAAGCAAGAGAATCCACCTGCAAGCTGTGATAATGTGCAGCAAAAGAGCATCATTGAGACCATGGAGCAGCATCtg/tg																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39617655	39617655	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0021362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	53	468	0	ENST00000262039.4:c.1840-1G>C		p.X614_splice	ENST00000262039	NM_002647.2	614																																																																															
EIF4A2	0	MSKCC	GRCh37	3	186502264	186502264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0021362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	146	356	1	ENST00000323963.5:c.73G>C	p.Glu25Gln	p.E25Q	ENST00000323963		25	Gag/Cag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106882	27106882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	237	576	1	ENST00000324856.7:c.6493G>C	p.Glu2165Gln	p.E2165Q	ENST00000324856	NM_006015.4	2165	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7578551	7578552	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	433	1002	2	ENST00000269305.4:c.378dup	p.Ser127LeufsTer22	p.S127Lfs*22	ENST00000269305	NM_001126112.2	126	-/C																																																																														
MSH6	0	MSKCC	GRCh37	2	48030805	48030805	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	56	281	0	ENST00000234420.5:c.3419A>C	p.Lys1140Thr	p.K1140T	ENST00000234420	NM_000179.2	1140	aAg/aCg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44935946	44935946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	224	320	0	ENST00000377967.4:c.2707C>G	p.Leu903Val	p.L903V	ENST00000377967	NM_021140.2	903	Cta/Gta																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	298	699	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	44	388	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115969	8115970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	137	420	0	ENST00000346208.3:c.1316dup	p.Thr440HisfsTer67	p.T440Hfs*67	ENST00000346208		439	gtc/gTtc																																																																														
TP53	0	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	774	924	1	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841230	15841231	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGCCGG			P-0021403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	62	260	0	ENST00000307771.7:c.1338_1343dupGAGCCG	p.Ser447_Arg448dup	p.S447_R448dup	ENST00000307771	NM_005089.3	447	-/AGCCGG																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781465	3781465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	183	419	0	ENST00000262367.5:c.4900G>A	p.Val1634Met	p.V1634M	ENST00000262367	NM_004380.2	1634	Gtg/Atg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060928	38060928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	178	675	0	ENST00000250448.2:c.1061C>G	p.Ser354Cys	p.S354C	ENST00000250448	NM_004496.3	354	tCc/tGc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670850	134670850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	223	524	0	ENST00000398015.3:c.761C>A	p.Thr254Asn	p.T254N	ENST00000398015	NM_004441.4	254	aCc/aAc																																																																														
HGF	0	MSKCC	GRCh37	7	81336664	81336664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	352	566	0	ENST00000222390.5:c.1558G>A	p.Gly520Arg	p.G520R	ENST00000222390	NM_000601.4	520	Gga/Aga																																																																														
PREX2	0	MSKCC	GRCh37	8	69031738	69031738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	358	933	0	ENST00000288368.4:c.3493C>A	p.Leu1165Ile	p.L1165I	ENST00000288368	NM_024870.2	1165	Ctt/Att																																																																														
TP53	0	MSKCC	GRCh37	17	7577529	7577529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	234	934	1	ENST00000269305.4:c.752T>G	p.Ile251Ser	p.I251S	ENST00000269305	NM_001126112.2	251	aTc/aGc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101867538	101867540	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0021407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	10	83	0	ENST00000374994.4:c.76_78delGCG	p.Ala26del	p.A26del	ENST00000374994	NM_004612.2	17	ctGGCg/ctg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9775634	9775634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	190	806	0	ENST00000377346.4:c.177C>G	p.Phe59Leu	p.F59L	ENST00000377346	NM_005026.3	59	ttC/ttG																																																																														
NTRK1	0	MSKCC	GRCh37	1	156837937	156837937	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141021604		P-0021407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	89	1085	1	ENST00000524377.1:c.470G>A	p.Arg157His	p.R157H	ENST00000524377	NM_002529.3	157	cGc/cAc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0021426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	40	926	2	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577152	7577154	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACC	ACC	-			P-0021426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	59	727	0	ENST00000269305.4:c.784_786delGGT	p.Gly262del	p.G262del	ENST00000269305	NM_001126112.2	262	GGT/-																																																																														
CD276	0	MSKCC	GRCh37	15	73994610	73994610	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	64	1047	0	ENST00000318443.5:c.94C>T	p.Gln32Ter	p.Q32*	ENST00000318443	NM_001024736.1	32	Cag/Tag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213876	66213876	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	31	876	0	ENST00000273854.3:c.2554T>G	p.Phe852Val	p.F852V	ENST00000273854	NM_004439.5	852	Ttc/Gtc																																																																														
MED12	0	MSKCC	GRCh37	X	70349900	70349900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	55	495	0	ENST00000374080.3:c.3883C>T	p.Arg1295Cys	p.R1295C	ENST00000374080		1295	Cgt/Tgt																																																																														
RFWD2	0	MSKCC	GRCh37	1	175914300	175914300	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	61	579	0	ENST00000367669.3:c.2185G>C	p.Glu729Gln	p.E729Q	ENST00000367669	NM_022457.5	729	Gaa/Caa																																																																														
TP53	0	MSKCC	GRCh37	17	7577016	7577090	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGC	TACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGC	-			P-0021456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	104	889	0	ENST00000269305.4:c.848_919+3del		p.X283_splice	ENST00000269305	NM_001126112.2	283																																																																															
KMT2B	0	MSKCC	GRCh37	19	36210902	36210902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	107	909	0	ENST00000222270.7:c.653G>A	p.Arg218Gln	p.R218Q	ENST00000222270	NM_014727.1	218	cGg/cAg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71021745	71021745	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	107	609	0	ENST00000318789.4:c.1613A>C	p.Glu538Ala	p.E538A	ENST00000318789	NM_032682.5	538	gAa/gCa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169862	32169862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	117	851	0	ENST00000375023.3:c.3746C>T	p.Pro1249Leu	p.P1249L	ENST00000375023	NM_004557.3	1249	cCa/cTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	87	468	0	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115809	8115809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	80	785	0	ENST00000346208.3:c.1158del	p.Lys387ArgfsTer17	p.K387Rfs*17	ENST00000346208		385	ttC/tt																																																																														
TP53	0	MSKCC	GRCh37	17	7578199	7578199	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	125	860	0	ENST00000269305.4:c.650T>C	p.Val217Ala	p.V217A	ENST00000269305	NM_001126112.2	217	gTg/gCg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15303243	15303243	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	68	1294	0	ENST00000263388.2:c.285T>G	p.Ser95Arg	p.S95R	ENST00000263388	NM_000435.2	95	agT/agG																																																																														
ATR	0	MSKCC	GRCh37	3	142280234	142280234	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	54	500	0	ENST00000350721.4:c.1200G>C	p.Leu400Phe	p.L400F	ENST00000350721	NM_001184.3	400	ttG/ttC																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	518	888	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
RAD52	0	MSKCC	GRCh37	12	1039046	1039046	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	361	668	0	ENST00000358495.3:c.287T>G	p.Val96Gly	p.V96G	ENST00000358495	NM_134424.2	96	gTt/gGt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32945130	32945130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	220	457	0	ENST00000380152.3:c.8525G>T	p.Arg2842Leu	p.R2842L	ENST00000380152		2842	cGc/cTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10273878	10273878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1830	802	876	0	ENST00000330684.3:c.391G>C	p.Ala131Pro	p.A131P	ENST00000330684	NM_001134407.1	131	Gca/Cca																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212330	36212330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	503	922	1	ENST00000222270.7:c.2081G>A	p.Arg694Gln	p.R694Q	ENST00000222270	NM_014727.1	694	cGg/cAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89717730	89717730	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	229	705	0	ENST00000371953.3:c.755A>T	p.Asp252Val	p.D252V	ENST00000371953	NM_000314.4	252	gAt/gTt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730858	40730858	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200227405		P-0021479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	181	1019	0	ENST00000373198.4:c.3677G>A	p.Arg1226Gln	p.R1226Q	ENST00000373198	NM_133170.3	1226	cGa/cAa																																																																														
SPOP	0	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	165	762	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																																																														
MGA	0	MSKCC	GRCh37	15	42053959	42053959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	37	452	0	ENST00000219905.7:c.7421T>C	p.Leu2474Pro	p.L2474P	ENST00000219905	NM_001164273.1	2474	cTa/cCa																																																																														
FANCA	0	MSKCC	GRCh37	16	89874705	89874705	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	177	1048	0	ENST00000389301.3:c.593A>C	p.Glu198Ala	p.E198A	ENST00000389301	NM_000135.2	198	gAa/gCa																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981903	70981903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	168	1055	3	ENST00000276594.2:c.193G>A	p.Ala65Thr	p.A65T	ENST00000276594	NM_024504.3	65	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0021501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	103	1107	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0021501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	91	1062	5	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MTOR	0	MSKCC	GRCh37	1	11177083	11177084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	98	897	0	ENST00000361445.4:c.6993dup	p.Tyr2332ValfsTer8	p.Y2332Vfs*8	ENST00000361445	NM_004958.3	2331	-/G																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971083	21971093	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGGAAGCC	TCCAGGAAGCC	GGCT			P-0021501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	33	780	2	ENST00000304494.5:c.265_275delinsAGCC	p.Gly89SerfsTer55	p.G89Sfs*55	ENST00000304494	NM_000077.4	89	GGCTTCCTGGAc/AGCCc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971083	21971093	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGGAAGCC	TCCAGGAAGCC	GGCT			P-0021501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	33	780	2	ENST00000304494.5:c.265_275delinsAGCC	p.Gly89SerfsTer55	p.G89Sfs*55	ENST00000304494	NM_000077.4	89	GGCTTCCTGGAc/AGCCc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971083	21971093	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAGGAAGCC	TCCAGGAAGCC	GGCT			P-0021501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	33	780	2	ENST00000304494.5:c.265_275delinsAGCC	p.Gly89SerfsTer55	p.G89Sfs*55	ENST00000304494	NM_000077.4	89	GGCTTCCTGGAc/AGCCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	408	956	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	243	694	0				ENST00000310581	NM_198253.2																																																																																
KDM5A	0	MSKCC	GRCh37	12	416796	416796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	115	523	0	ENST00000399788.2:c.3754C>T	p.Arg1252Cys	p.R1252C	ENST00000399788	NM_001042603.1	1252	Cgt/Tgt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8319959	8319959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	61	356	0	ENST00000356435.5:c.5542G>A	p.Val1848Ile	p.V1848I	ENST00000356435		1848	Gtt/Att																																																																														
ASXL2	0	MSKCC	GRCh37	2	25976422	25976422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	178	916	0	ENST00000435504.4:c.1123G>C	p.Glu375Gln	p.E375Q	ENST00000435504		375	Gaa/Caa																																																																														
ELF3	0	MSKCC	GRCh37	1	201982978	201982978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	356	970	1	ENST00000359651.3:c.827G>A	p.Trp276Ter	p.W276*	ENST00000359651		276	tGg/tAg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118369241	118369241	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	88	460	2	ENST00000534358.1:c.5959G>A	p.Glu1987Lys	p.E1987K	ENST00000534358	NM_005933.3	1987	Gaa/Aaa																																																																														
FLT1	0	MSKCC	GRCh37	13	28908254	28908254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	136	799	0	ENST00000282397.4:c.2501G>A	p.Gly834Glu	p.G834E	ENST00000282397	NM_002019.4	834	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578253	7578253	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	188	671	0	ENST00000269305.4:c.596del	p.Gly199GlufsTer48	p.G199Efs*48	ENST00000269305	NM_001126112.2	199	gGa/ga																																																																														
STK40	0	MSKCC	GRCh37	1	36824376	36824376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	153	744	1	ENST00000373129.3:c.160G>A	p.Ala54Thr	p.A54T	ENST00000373129	NM_032017.1	54	Gcg/Acg																																																																														
TCF3	0	MSKCC	GRCh37	19	1612254	1612254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	98	706	0	ENST00000344749.5:c.1765C>A	p.Leu589Met	p.L589M	ENST00000344749	NM_001136139.2	589	Ctg/Atg																																																																														
KIT	0	MSKCC	GRCh37	4	55604658	55604658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	155	642	0	ENST00000288135.5:c.2866C>T	p.Arg956Trp	p.R956W	ENST00000288135	NM_000222.2	956	Cgg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	16	817	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593405	48593405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	14	517	0	ENST00000342988.3:c.1156G>A	p.Gly386Ser	p.G386S	ENST00000342988	NM_005359.5	386	Ggt/Agt																																																																														
HRAS	0	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	231	699	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	162	771	3	ENST00000269305.4:c.797del	p.Gly266AspfsTer79	p.G266Dfs*79	ENST00000269305	NM_001126112.2	266	gGa/ga																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302250	15302250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	205	875	0	ENST00000263388.2:c.1021C>T	p.Pro341Ser	p.P341S	ENST00000263388	NM_000435.2	341	Ccc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	388	828	1	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																																																														
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	15	299	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0021550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	103	296	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	163	725	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444951	49444951	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	61	487	0	ENST00000301067.7:c.2515G>C	p.Glu839Gln	p.E839Q	ENST00000301067	NM_003482.3	839	Gag/Cag																																																																														
INSR	0	MSKCC	GRCh37	19	7132203	7132203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	165	761	0	ENST00000302850.5:c.2808G>A	p.Trp936Ter	p.W936*	ENST00000302850	NM_000208.2	936	tgG/tgA																																																																														
ALK	0	MSKCC	GRCh37	2	30143161	30143161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	188	579	0	ENST00000389048.3:c.365C>T	p.Thr122Met	p.T122M	ENST00000389048	NM_004304.4	122	aCg/aTg																																																																														
IRS1	0	MSKCC	GRCh37	2	227659797	227659797	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	149	422	0	ENST00000305123.5:c.3658C>G	p.Arg1220Gly	p.R1220G	ENST00000305123	NM_005544.2	1220	Cgc/Ggc																																																																														
FLT4	0	MSKCC	GRCh37	5	180047644	180047644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	69	696	0	ENST00000261937.6:c.2371G>A	p.Val791Ile	p.V791I	ENST00000261937	NM_182925.4	791	Gtc/Atc																																																																														
ETV1	0	MSKCC	GRCh37	7	13975366	13975366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	295	497	0	ENST00000405192.2:c.521C>G	p.Ser174Cys	p.S174C	ENST00000405192	NM_001163147.1	174	tCc/tGc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421039	49421039	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	80	592	1	ENST00000301067.7:c.14710C>T	p.Arg4904Ter	p.R4904*	ENST00000301067	NM_003482.3	4904	Cga/Tga																																																																														
KMT2C	0	MSKCC	GRCh37	7	151949665	151949665	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	124	592	0	ENST00000262189.6:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000262189	NM_170606.2	479	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0021597-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	32	333	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	57	630	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	1026	MSKCC	GRCh37	6	36652198	36652199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	202	742	0	ENST00000244741.5:c.322dup	p.Glu108GlyfsTer21	p.E108Gfs*21	ENST00000244741	NM_000389.4	107	gag/gaGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47038511	47038511	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	107	355	2	ENST00000329236.7:c.442C>T	p.Gln148Ter	p.Q148*	ENST00000329236	NM_001204466.1	148	Cag/Tag																																																																														
BLM	0	MSKCC	GRCh37	15	91346771	91346771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	86	496	0	ENST00000355112.3:c.3379C>T	p.Gln1127Ter	p.Q1127*	ENST00000355112	NM_000057.2	1127	Cag/Tag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248728	212248728	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021618-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	40	486	0	ENST00000342788.4:c.3539T>A	p.Leu1180His	p.L1180H	ENST00000342788	NM_005235.2	1180	cTt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	158	872	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
NF1	0	MSKCC	GRCh37	17	29657313	29657313	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	142	803	0	ENST00000358273.4:c.5610-1G>T		p.X1870_splice	ENST00000358273	NM_001042492.2	1870																																																																															
RPTOR	0	MSKCC	GRCh37	17	78599548	78599548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	143	770	5	ENST00000306801.3:c.220G>A	p.Asp74Asn	p.D74N	ENST00000306801	NM_020761.2	74	Gat/Aat																																																																														
CSF1R	0	MSKCC	GRCh37	5	149457704	149457704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	200	1048	1	ENST00000286301.3:c.700G>T	p.Asp234Tyr	p.D234Y	ENST00000286301	NM_005211.3	234	Gat/Tat																																																																														
GLI1	0	MSKCC	GRCh37	12	57859424	57859424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	76	706	1	ENST00000228682.2:c.569G>T	p.Cys190Phe	p.C190F	ENST00000228682	NM_005269.2	190	tGc/tTc																																																																														
DIS3	0	MSKCC	GRCh37	13	73337708	73337708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	55	351	0	ENST00000377767.4:c.2008G>T	p.Ala670Ser	p.A670S	ENST00000377767	NM_014953.3	670	Gcc/Tcc																																																																														
MYCN	0	MSKCC	GRCh37	2	16086205	16086205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	102	628	1	ENST00000281043.3:c.1381G>T	p.Ala461Ser	p.A461S	ENST00000281043	NM_005378.4	461	Gct/Tct																																																																														
RTEL1	0	MSKCC	GRCh37	20	62324537	62324537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	200	1246	0	ENST00000508582.2:c.2965G>C	p.Glu989Gln	p.E989Q	ENST00000508582		989	Gag/Cag																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670483	134670483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	141	696	1	ENST00000398015.3:c.394G>T	p.Ala132Ser	p.A132S	ENST00000398015	NM_004441.4	132	Gcc/Tcc																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664714	138664714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	73	247	1	ENST00000330315.3:c.851C>A	p.Pro284His	p.P284H	ENST00000330315	NM_023067.3	284	cCc/cAc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143159135	143159135	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	66	580	0	ENST00000262992.4:c.718A>G	p.Arg240Gly	p.R240G	ENST00000262992	NM_001101669.1	240	Aga/Gga																																																																														
CARD11	0	MSKCC	GRCh37	7	2952925	2952925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	111	812	0	ENST00000396946.4:c.3015G>T	p.Lys1005Asn	p.K1005N	ENST00000396946	NM_032415.4	1005	aaG/aaT																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874817	151874817	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021628-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	73	407	0	ENST00000262189.6:c.7721T>A	p.Phe2574Tyr	p.F2574Y	ENST00000262189	NM_170606.2	2574	tTc/tAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	204	785	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	88	763	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
FLT4	0	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	166	980	7	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																																																														
CDH1	0	MSKCC	GRCh37	16	68849462	68849462	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	171	835	0	ENST00000261769.5:c.1365del	p.Val456Ter	p.V456*	ENST00000261769	NM_004360.3	455	gcA/gc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52724339	52724339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	262	735	0	ENST00000322088.6:c.1471G>A	p.Gly491Arg	p.G491R	ENST00000322088	NM_014225.5	491	Gga/Aga																																																																														
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	253	740	1	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
NSD1	0	MSKCC	GRCh37	5	176721219	176721219	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	213	553	0	ENST00000439151.2:c.6850G>C	p.Glu2284Gln	p.E2284Q	ENST00000439151	NM_022455.4	2284	Gag/Cag																																																																														
FUBP1	0	MSKCC	GRCh37	1	78420945	78420945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	112	741	1	ENST00000370768.2:c.1775A>G	p.Lys592Arg	p.K592R	ENST00000370768	NM_003902.3	592	aAa/aGa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532555	63532555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	95	949	1	ENST00000307078.5:c.2024G>T	p.Arg675Leu	p.R675L	ENST00000307078	NM_004655.3	675	cGt/cTt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098967	178098967	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	161	466	0	ENST00000397062.3:c.78A>C	p.Gln26His	p.Q26H	ENST00000397062	NM_006164.4	26	caA/caC																																																																														
NSD1	0	MSKCC	GRCh37	5	176721261	176721261	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	239	534	0	ENST00000439151.2:c.6892G>C	p.Asp2298His	p.D2298H	ENST00000439151	NM_022455.4	2298	Gac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	31	506	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0021684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	63	416	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	38	627	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89717684	89717735	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTCATGTACTTTGAGTTCCCTCAGCCGTTACCTGTGTGTGGTGATATCA	AAGTTCATGTACTTTGAGTTCCCTCAGCCGTTACCTGTGTGTGGTGATATCA	-			P-0021684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	35	664	0	ENST00000371953.3:c.713_764del	p.Phe238Ter	p.F238*	ENST00000371953	NM_000314.4	237	AAGTTCATGTACTTTGAGTTCCCTCAGCCGTTACCTGTGTGTGGTGATATCAaa/aa																																																																														
ABL1	25	MSKCC	GRCh37	9	133738360	133738360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	248	465	0	ENST00000318560.5:c.760G>A	p.Gly254Arg	p.G254R	ENST00000318560	NM_005157.4	254	Ggg/Agg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061123	38061213	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAGT	CCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAGT	GCGGCGGGGGCGGGAGCGGA			P-0021702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	77	555	4	ENST00000250448.2:c.776_866delinsTCCGCTCCCGCCCCCGCCGC	p.Tyr259PhefsTer10	p.Y259Ffs*10	ENST00000250448	NM_004496.3	259	tACTTGCGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGc/tTCCGCTCCCGCCCCCGCCGCc																																																																														
SLX4	0	MSKCC	GRCh37	16	3658628	3658628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	206	1074	0	ENST00000294008.3:c.338C>T	p.Ser113Phe	p.S113F	ENST00000294008	NM_032444.2	113	tCt/tTt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781409	3781409	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	107	709	0	ENST00000262367.5:c.4956del	p.Asp1653ThrfsTer91	p.D1653Tfs*91	ENST00000262367	NM_004380.2	1652	ccC/cc																																																																														
CDH1	0	MSKCC	GRCh37	16	68853057	68853193	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTATTGTTGGTTTTCAAAATAAAAACGTTGGAAGTAACCATATAACTGAAGAAGCGCTTAAGCCGTTTTCAGCTACATGTTGTTTGCTGGTCCTATTCTAAAAGCCAGAGCTTGTCCCCGTTCAGATATCGGATTT	CCTATTGTTGGTTTTCAAAATAAAAACGTTGGAAGTAACCATATAACTGAAGAAGCGCTTAAGCCGTTTTCAGCTACATGTTGTTTGCTGGTCCTATTCTAAAAGCCAGAGCTTGTCCCCGTTCAGATATCGGATTT	-			P-0021702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	17	69	0	ENST00000261769.5:c.1566-126_1576del		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																															
ASXL1	0	MSKCC	GRCh37	20	31023479	31023480	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	79	555	0	ENST00000375687.4:c.2966_2967del	p.Ser989Ter	p.S989*	ENST00000375687	NM_015338.5	988	gaCTct/gact																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152014	55152015	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0021702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	78	590	0	ENST00000257290.5:c.2447_2448del	p.His816ProfsTer2	p.H816Pfs*2	ENST00000257290	NM_006206.4	816	CAc/c																																																																														
NF1	0	MSKCC	GRCh37	17	29541468	29541468	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	66	150	0	ENST00000358273.4:c.1393-1G>A		p.X465_splice	ENST00000358273	NM_001042492.2	465																																																																															
EPHA5	0	MSKCC	GRCh37	4	66280028	66280028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	58	406	0	ENST00000273854.3:c.1661G>A	p.Arg554Lys	p.R554K	ENST00000273854	NM_004439.5	554	aGa/aAa																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481403	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	318	638	1	ENST00000288602.6:c.1405_1406delinsTC	p.Gly469Ser	p.G469S	ENST00000288602	NM_004333.4	469	GGa/TCa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141552	11141552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	258	819	1	ENST00000344626.4:c.3529G>A	p.Asp1177Asn	p.D1177N	ENST00000344626	NM_003072.3	1177	Gac/Aac																																																																														
ERF	0	MSKCC	GRCh37	19	42753428	42753428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	230	912	1	ENST00000222329.4:c.836C>T	p.Pro279Leu	p.P279L	ENST00000222329	NM_006494.2	279	cCc/cTc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508582	106508582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	72	514	0	ENST00000359195.3:c.576C>A	p.Asp192Glu	p.D192E	ENST00000359195	NM_002649.2	192	gaC/gaA																																																																														
NTRK2	0	MSKCC	GRCh37	9	87339241	87339241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	264	747	1	ENST00000277120.3:c.823G>A	p.Asp275Asn	p.D275N	ENST00000277120		275	Gat/Aat																																																																														
APC	0	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	45	377	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0021772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	160	752	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																														
FLT1	0	MSKCC	GRCh37	13	28964100	28964100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	36	735	0	ENST00000282397.4:c.1802A>G	p.His601Arg	p.H601R	ENST00000282397	NM_002019.4	601	cAc/cGc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39535264	39535264	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	50	335	0	ENST00000262039.4:c.8A>T	p.Glu3Val	p.E3V	ENST00000262039	NM_002647.2	3	gAa/gTa																																																																														
EPAS1	0	MSKCC	GRCh37	2	46608810	46608810	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	174	959	0	ENST00000263734.3:c.2121G>T	p.Lys707Asn	p.K707N	ENST00000263734	NM_001430.4	707	aaG/aaT																																																																														
PLK2	0	MSKCC	GRCh37	5	57751444	57751444	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	21	600	0	ENST00000274289.3:c.1547T>A	p.Phe516Tyr	p.F516Y	ENST00000274289	NM_006622.3	516	tTt/tAt																																																																														
APC	0	MSKCC	GRCh37	5	112162826	112162827	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATTATTGCAAG			P-0021772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	25	626	0	ENST00000257430.4:c.1431_1441dup	p.Val481AspfsTer21	p.V481Dfs*21	ENST00000257430	NM_000038.5	477	gaa/gaATTATTGCAAGa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965672	93965672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	27	695	0	ENST00000369303.4:c.2256G>C	p.Met752Ile	p.M752I	ENST00000369303	NM_004440.3	752	atG/atC																																																																														
CARD11	0	MSKCC	GRCh37	7	2985479	2985479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	45	748	1	ENST00000396946.4:c.332C>A	p.Pro111His	p.P111H	ENST00000396946	NM_032415.4	111	cCc/cAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39922318	39922318	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	128	230	0	ENST00000378444.4:c.3854del	p.Pro1285LeufsTer9	p.P1285Lfs*9	ENST00000378444	NM_001123385.1	1285	cCt/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	135	745	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	95	585	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	81	438	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TRAF7	0	MSKCC	GRCh37	16	2225940	2225940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	98	821	0	ENST00000326181.6:c.1732G>A	p.Glu578Lys	p.E578K	ENST00000326181	NM_032271.2	578	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	62	304	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	93	643	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146132	38146132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	224	792	2	ENST00000317025.8:c.3374C>T	p.Pro1125Leu	p.P1125L	ENST00000317025	NM_023034.1	1125	cCg/cTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	403	369	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	357	891	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980844	40980844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1440	387	833	0	ENST00000373198.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000373198	NM_133170.3	548	Gaa/Aaa																																																																														
KDR	0	MSKCC	GRCh37	4	55961104	55961104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	345	820	2	ENST00000263923.4:c.2836C>T	p.Arg946Cys	p.R946C	ENST00000263923	NM_002253.2	946	Cgt/Tgt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132522	11132522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	379	853	2	ENST00000344626.4:c.2738C>T	p.Pro913Leu	p.P913L	ENST00000344626	NM_003072.3	913	cCg/cTg																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553024	106553024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	400	842	1	ENST00000369096.4:c.989C>T	p.Pro330Leu	p.P330L	ENST00000369096	NM_001198.3	330	cCa/cTa																																																																														
EZH2	0	MSKCC	GRCh37	7	148524329	148524329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	150	691	0	ENST00000320356.2:c.655C>T	p.Pro219Ser	p.P219S	ENST00000320356	NM_004456.4	219	Cct/Tct																																																																														
PARK2	0	MSKCC	GRCh37	6	162206935	162206935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	178	408	0	ENST00000366898.1:c.740C>T	p.Pro247Leu	p.P247L	ENST00000366898	NM_004562.2	247	cCc/cTc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45374909	45374909	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	323	849	0	ENST00000262160.6:c.934T>G	p.Cys312Gly	p.C312G	ENST00000262160	NM_005901.5	312	Tgc/Ggc																																																																														
GATA3	0	MSKCC	GRCh37	10	8100418	8100418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	382	950	2	ENST00000346208.3:c.392C>T	p.Ser131Phe	p.S131F	ENST00000346208		131	tCc/tTc																																																																														
FYN	0	MSKCC	GRCh37	6	112015732	112015732	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	279	560	0	ENST00000368678.4:c.1111-1G>A		p.X371_splice	ENST00000368678		371																																																																															
FLT1	0	MSKCC	GRCh37	13	29001963	29001963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	310	765	0	ENST00000282397.4:c.1202G>A	p.Gly401Glu	p.G401E	ENST00000282397	NM_002019.4	401	gGg/gAg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18644421	18644421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	158	588	0	ENST00000266497.5:c.2599T>C	p.Phe867Leu	p.F867L	ENST00000266497		867	Ttc/Ctc																																																																														
POLE	0	MSKCC	GRCh37	12	133202340	133202340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	367	743	1	ENST00000320574.5:c.6548C>T	p.Pro2183Leu	p.P2183L	ENST00000320574	NM_006231.2	2183	cCt/cTt																																																																														
FLT1	0	MSKCC	GRCh37	13	28908160	28908160	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	622	778	0	ENST00000282397.4:c.2593+2T>A		p.X865_splice	ENST00000282397	NM_002019.4	865																																																																															
RB1	0	MSKCC	GRCh37	13	49037868	49037868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	114	592	0	ENST00000267163.4:c.2108T>C	p.Ile703Thr	p.I703T	ENST00000267163	NM_000321.2	703	aTt/aCt																																																																														
IRS2	0	MSKCC	GRCh37	13	110435460	110435461	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	313	788	6	ENST00000375856.3:c.2940_2941delCCinsTT	p.Leu981Phe	p.L981F	ENST00000375856	NM_003749.2	980	aaCCtc/aaTTtc																																																																														
CD276	0	MSKCC	GRCh37	15	73995272	73995272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	65	24	0	ENST00000318443.5:c.578C>T	p.Ser193Leu	p.S193L	ENST00000318443	NM_001024736.1	193	tCg/tTg																																																																														
SLX4	0	MSKCC	GRCh37	16	3639819	3639819	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	836	910	2	ENST00000294008.3:c.3820C>T	p.Gln1274Ter	p.Q1274*	ENST00000294008	NM_032444.2	1274	Caa/Taa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779331	3779331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	370	688	0	ENST00000262367.5:c.5717C>T	p.Pro1906Leu	p.P1906L	ENST00000262367	NM_004380.2	1906	cCt/cTt																																																																														
NF1	0	MSKCC	GRCh37	17	29592305	29592305	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	134	592	1	ENST00000358273.4:c.4783C>T	p.Gln1595Ter	p.Q1595*	ENST00000358273	NM_001042492.2	1595	Caa/Taa																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805888	46805888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	253	611	1	ENST00000290295.7:c.68G>A	p.Gly23Glu	p.G23E	ENST00000290295	NM_006361.5	23	gGg/gAg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59793370	59793370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	142	772	0	ENST00000259008.2:c.2434C>T	p.Pro812Ser	p.P812S	ENST00000259008	NM_032043.2	812	Cct/Tct																																																																														
PTPRS	0	MSKCC	GRCh37	19	5265165	5265165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	460	980	2	ENST00000357368.4:c.422C>T	p.Pro141Leu	p.P141L	ENST00000357368	NM_002850.3	141	cCa/cTa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36220904	36220904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	190	348	0	ENST00000222270.7:c.4954G>A	p.Gly1652Ser	p.G1652S	ENST00000222270	NM_014727.1	1652	Ggc/Agc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45864839	45864839	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	503	1127	0	ENST00000391945.4:c.1180T>G	p.Phe394Val	p.F394V	ENST00000391945	NM_000400.3	394	Ttc/Gtc																																																																														
MYCN	0	MSKCC	GRCh37	2	16086128	16086128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	313	692	1	ENST00000281043.3:c.1304C>T	p.Ala435Val	p.A435V	ENST00000281043	NM_005378.4	435	gCc/gTc																																																																														
ALK	0	MSKCC	GRCh37	2	29519782	29519782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	354	856	0	ENST00000389048.3:c.1789G>A	p.Val597Met	p.V597M	ENST00000389048	NM_004304.4	597	Gtg/Atg																																																																														
EPAS1	0	MSKCC	GRCh37	2	46603879	46603880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	348	741	0	ENST00000263734.3:c.1236_1237insA	p.Ser413IlefsTer72	p.S413Ifs*72	ENST00000263734	NM_001430.4	412	-/A																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419849	41419849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	242	537	0	ENST00000373198.4:c.472C>T	p.Pro158Ser	p.P158S	ENST00000373198	NM_133170.3	158	Cca/Tca																																																																														
NSD1	0	MSKCC	GRCh37	5	176637013	176637013	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	652	809	0	ENST00000439151.2:c.1613T>A	p.Ile538Asn	p.I538N	ENST00000439151	NM_022455.4	538	aTc/aAc																																																																														
FLT4	0	MSKCC	GRCh37	5	180046757	180046758	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	669	772	1	ENST00000261937.6:c.2554_2555delGGinsAA	p.Gly852Asn	p.G852N	ENST00000261937	NM_182925.4	852	GGc/AAc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508701	106508701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	636	706	0	ENST00000359195.3:c.695C>T	p.Thr232Ile	p.T232I	ENST00000359195	NM_002649.2	232	aCc/aTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341129	8341129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	220	708	0	ENST00000356435.5:c.5087G>A	p.Gly1696Glu	p.G1696E	ENST00000356435		1696	gGa/gAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486154	8486154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	309	629	0	ENST00000356435.5:c.2663G>A	p.Gly888Glu	p.G888E	ENST00000356435		888	gGa/gAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518298	8518298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021846-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	200	460	0	ENST00000356435.5:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000356435		365	Gaa/Aaa																																																																														
AXL	0	MSKCC	GRCh37	19	41727829	41727829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	215	874	5	ENST00000301178.4:c.454G>A	p.Ala152Thr	p.A152T	ENST00000301178	NM_021913.4	152	Gcc/Acc																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8389318	8389318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	83	763	2	ENST00000356435.5:c.4300G>A	p.Glu1434Lys	p.E1434K	ENST00000356435		1434	Gaa/Aaa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786197	3786198	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0021853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	64	634	0	ENST00000262367.5:c.4567_4568delTT	p.Phe1523GlnfsTer5	p.F1523Qfs*5	ENST00000262367	NM_004380.2	1523	TTc/c																																																																														
TP53	0	MSKCC	GRCh37	17	7578249	7578250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	172	740	0	ENST00000269305.4:c.599dupA	p.Asn200LysfsTer9	p.N200Kfs*9	ENST00000269305	NM_001126112.2	200	aat/aaAt																																																																														
KDR	0	MSKCC	GRCh37	4	55960974	55960976	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0021853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	63	545	0	ENST00000263923.4:c.2964_2966delAGA	p.Glu990del	p.E990del	ENST00000263923	NM_002253.2	988	gaAGAg/gag																																																																														
TET2	0	MSKCC	GRCh37	4	106197453	106197453	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	54	352	0	ENST00000380013.4:c.5786A>T	p.Glu1929Val	p.E1929V	ENST00000380013	NM_001127208.2	1929	gAg/gTg																																																																														
CASP8	0	MSKCC	GRCh37	2	202149671	202149671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	99	594	1	ENST00000358485.4:c.1112G>A	p.Cys371Tyr	p.C371Y	ENST00000358485	NM_001080125.1	371	tGc/tAc																																																																														
BRD4	0	MSKCC	GRCh37	19	15366939	15366939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	173	1005	9	ENST00000263377.2:c.1687delA	p.Ser563AlafsTer21	p.S563Afs*21	ENST00000263377	NM_058243.2	563	Agc/gc																																																																														
LATS2	0	MSKCC	GRCh37	13	21557540	21557540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	174	730	2	ENST00000382592.4:c.2305C>T	p.Arg769Trp	p.R769W	ENST00000382592	NM_014572.2	769	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	148	681	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	32	229	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	107	514	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	107	533	3	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	81	756	0	ENST00000397062.3:c.246A>T	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaT																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057924	27057924	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	182	735	1	ENST00000324856.7:c.1636delC	p.Gln546ArgfsTer73	p.Q546Rfs*73	ENST00000324856	NM_006015.4	544	caC/ca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821956	72821956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	66	333	0	ENST00000268489.5:c.10219delG	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3407	Gct/ct																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	95	457	2	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
ABL1	0	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	144	783	0	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139409036	139409036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	199	955	0	ENST00000277541.6:c.2133delC	p.Thr712ProfsTer60	p.T712Pfs*60	ENST00000277541	NM_017617.3	711	ccC/cc																																																																														
STAT5A	0	MSKCC	GRCh37	17	40460202	40460202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	143	550	0	ENST00000345506.4:c.1913G>A	p.Arg638His	p.R638H	ENST00000345506	NM_003152.3	638	cGc/cAc																																																																														
DICER1	0	MSKCC	GRCh37	14	95572076	95572076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	99	686	2	ENST00000343455.3:c.3032C>T	p.Ala1011Val	p.A1011V	ENST00000343455	NM_177438.2	1011	gCg/gTg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	96	500	0	ENST00000274335.5:c.1746-2A>G		p.X582_splice	ENST00000274335		582																																																																															
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	127	637	5	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	95	646	2	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9782032	9782032	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	103	580	0	ENST00000377346.4:c.2059delG		p.X687_splice	ENST00000377346	NM_005026.3	687																																																																															
RFWD2	0	MSKCC	GRCh37	1	176054920	176054920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	89	495	0	ENST00000367669.3:c.1133G>A	p.Arg378His	p.R378H	ENST00000367669	NM_022457.5	378	cGt/cAt																																																																														
CHEK1	0	MSKCC	GRCh37	11	125497567	125497567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	24	400	0	ENST00000428830.2:c.131G>A	p.Arg44His	p.R44H	ENST00000428830	NM_001114121.2	44	cGt/cAt																																																																														
ARID2	0	MSKCC	GRCh37	12	46231462	46231462	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	98	411	1	ENST00000334344.6:c.1306delA	p.Ile436LeufsTer4	p.I436Lfs*4	ENST00000334344	NM_152641.2	434	acA/ac																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421833	49421833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	240	730	1	ENST00000301067.7:c.14474G>A	p.Arg4825Gln	p.R4825Q	ENST00000301067	NM_003482.3	4825	cGg/cAg																																																																														
TBX3	0	MSKCC	GRCh37	12	115110086	115110086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	256	890	1	ENST00000257566.3:c.1792G>A	p.Gly598Arg	p.G598R	ENST00000257566	NM_016569.3	598	Gga/Aga																																																																														
FOXO1	0	MSKCC	GRCh37	13	41133897	41133898	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	79	427	0	ENST00000379561.5:c.1730dupG	p.Tyr578LeufsTer24	p.Y578Lfs*24	ENST00000379561	NM_002015.3	577	ggc/ggGc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103525620	103525620	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149859074		P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	96	472	0	ENST00000355739.4:c.2891G>A	p.Arg964Gln	p.R964Q	ENST00000355739	NM_000123.3	964	cGg/cAg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435979	110435979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	182	789	4	ENST00000375856.3:c.2422C>A	p.Arg808Ser	p.R808S	ENST00000375856	NM_003749.2	808	Cgc/Agc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991731	72991731	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	74	277	1	ENST00000268489.5:c.2314delG	p.Ala772ArgfsTer52	p.A772Rfs*52	ENST00000268489	NM_006885.3	772	Gcg/cg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696638	47696638	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	118	562	2	ENST00000347630.2:c.310T>A	p.Phe104Ile	p.F104I	ENST00000347630	NM_001007230.1	104	Ttc/Atc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15302611	15302611	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	235	811	0	ENST00000263388.2:c.747delG	p.Thr250HisfsTer122	p.T250Hfs*122	ENST00000263388	NM_000435.2	249	ggG/gg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	155	675	1	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160679	56160679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	154	494	0	ENST00000399503.3:c.953T>C	p.Leu318Ser	p.L318S	ENST00000399503	NM_005921.1	318	tTa/tCa																																																																														
APC	0	MSKCC	GRCh37	5	112178937	112178937	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199558585		P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	53	386	0	ENST00000257430.4:c.7646G>A	p.Arg2549His	p.R2549H	ENST00000257430	NM_000038.5	2549	cGt/cAt																																																																														
PNRC1	0	MSKCC	GRCh37	6	89793614	89793615	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	53	401	0	ENST00000336032.3:c.688dupA	p.Arg230LysfsTer3	p.R230Kfs*3	ENST00000336032	NM_006813.2	228	gca/gcAa																																																																														
HGF	0	MSKCC	GRCh37	7	81372755	81372755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	121	524	0	ENST00000222390.5:c.779G>A	p.Cys260Tyr	p.C260Y	ENST00000222390	NM_000601.4	260	tGc/tAc																																																																														
TSC1	0	MSKCC	GRCh37	9	135779144	135779144	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	165	538	0	ENST00000298552.3:c.2102A>C	p.Gln701Pro	p.Q701P	ENST00000298552	NM_001162426.1	701	cAg/cCg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	63	440	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
CHEK1	0	MSKCC	GRCh37	11	125514528	125514528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	32	480	0	ENST00000428830.2:c.1223G>T	p.Cys408Phe	p.C408F	ENST00000428830	NM_001114121.2	408	tGt/tTt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992835	72992835	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	86	621	0	ENST00000268489.5:c.1210G>C	p.Gly404Arg	p.G404R	ENST00000268489	NM_006885.3	404	Ggc/Cgc																																																																														
NF1	0	MSKCC	GRCh37	17	29550487	29550487	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	79	479	0	ENST00000358273.4:c.1747A>T	p.Lys583Ter	p.K583*	ENST00000358273	NM_001042492.2	583	Aag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29652876	29652876	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	73	396	0	ENST00000358273.4:c.4874del	p.Tyr1625SerfsTer5	p.Y1625Sfs*5	ENST00000358273	NM_001042492.2	1625	tAc/tc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120212	70120212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	116	771	2	ENST00000245479.2:c.1214G>T	p.Ser405Ile	p.S405I	ENST00000245479	NM_000346.3	405	aGc/aTc																																																																														
CCNE1	0	MSKCC	GRCh37	19	30313152	30313153	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	94	735	3	ENST00000262643.3:c.846_847delinsCT	p.Leu282_Asp283delinsPheTyr	p.L282_D283delinsFY	ENST00000262643	NM_001238.2	282	ttGGat/ttCTat																																																																														
RAF1	0	MSKCC	GRCh37	3	12641211	12641211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	100	655	1	ENST00000251849.4:c.1087G>A	p.Val363Ile	p.V363I	ENST00000251849	NM_002880.3	363	Gtt/Att																																																																														
BCL6	0	MSKCC	GRCh37	3	187446891	187446891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	49	908	1	ENST00000232014.4:c.1302C>A	p.Ser434Arg	p.S434R	ENST00000232014	NM_001130845.1	434	agC/agA																																																																														
WHSC1	0	MSKCC	GRCh37	4	1952907	1952907	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	106	783	0	ENST00000382891.5:c.1990G>T	p.Ala664Ser	p.A664S	ENST00000382891	NM_133335.3	664	Gcc/Tcc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149497343	149497343	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	119	756	0	ENST00000261799.4:c.2975del	p.Leu992CysfsTer53	p.L992Cfs*53	ENST00000261799	NM_002609.3	992	tTg/tg																																																																														
TEK	0	MSKCC	GRCh37	9	27220063	27220063	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	115	726	0	ENST00000380036.4:c.3120C>A	p.Cys1040Ter	p.C1040*	ENST00000380036	NM_000459.3	1040	tgC/tgA																																																																														
ATRX	0	MSKCC	GRCh37	X	76940004	76940004	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	125	837	0	ENST00000373344.5:c.744del	p.Gly249ValfsTer8	p.G249Vfs*8	ENST00000373344	NM_000489.3	248	ctT/ct																																																																														
XIAP	0	MSKCC	GRCh37	X	123040881	123040881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	105	787	1	ENST00000355640.3:c.1344G>T	p.Lys448Asn	p.K448N	ENST00000355640		448	aaG/aaT																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591826	48591826	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	38	578	1	ENST00000342988.3:c.989A>T	p.Glu330Val	p.E330V	ENST00000342988	NM_005359.5	330	gAa/gTa																																																																														
TSC2	0	MSKCC	GRCh37	16	2122246	2122247	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTT			P-0021917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	295	511	0	ENST00000219476.3:c.2103_2104insTTT	p.Ser701_Asp702insPhe	p.S701_D702insF	ENST00000219476	NM_000548.3	701	tct/tcTTTt																																																																														
DAXX	0	MSKCC	GRCh37	6	33289526	33289526	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0021917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	467	762	0	ENST00000374542.5:c.177C>G	p.Tyr59Ter	p.Y59*	ENST00000374542	NM_001141970.1	59	taC/taG																																																																														
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	204	970	0	ENST00000269305.4:c.838delA	p.Arg280GlufsTer65	p.R280Efs*65	ENST00000269305	NM_001126112.2	280	Aga/ga																																																																														
NF2	0	MSKCC	GRCh37	22	30051638	30051638	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	124	604	0	ENST00000338641.4:c.572G>A	p.Trp191Ter	p.W191*	ENST00000338641	NM_000268.3	191	tGg/tAg																																																																														
B2M	0	MSKCC	GRCh37	15	45003747	45003747	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0021927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	148	699	0	ENST00000558401.1:c.3G>A	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	atG/atA																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	212	844	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
CASP8	0	MSKCC	GRCh37	2	202131486	202131486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	83	600	0	ENST00000358485.4:c.454C>T	p.Pro152Ser	p.P152S	ENST00000358485	NM_001080125.1	152	Cca/Tca																																																																														
IDH1	0	MSKCC	GRCh37	2	209113109	209113109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	82	356	2	ENST00000345146.2:c.398A>G	p.His133Arg	p.H133R	ENST00000345146	NM_005896.2	133	cAt/cGt																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056617	26056617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	113	302	0	ENST00000343677.2:c.40C>T	p.Pro14Ser	p.P14S	ENST00000343677	NM_005319.3	14	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	24	195	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7579356	7579356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	117	1002	4	ENST00000269305.4:c.331C>A	p.Leu111Met	p.L111M	ENST00000269305	NM_001126112.2	111	Ctg/Atg																																																																														
RBM10	0	MSKCC	GRCh37	X	47044595	47044595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	199	612	1	ENST00000329236.7:c.1858G>T	p.Glu620Ter	p.E620*	ENST00000329236	NM_001204466.1	620	Gag/Tag																																																																														
ATR	0	MSKCC	GRCh37	3	142268411	142268411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	34	662	0	ENST00000350721.4:c.3081G>C	p.Glu1027Asp	p.E1027D	ENST00000350721	NM_001184.3	1027	gaG/gaC																																																																														
RB1	0	MSKCC	GRCh37	13	48916834	48916834	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	88	649	0	ENST00000267163.4:c.368delA	p.Asn123ThrfsTer2	p.N123Tfs*2	ENST00000267163	NM_000321.2	122	Aaa/aa																																																																														
EP300	0	MSKCC	GRCh37	22	41536190	41536190	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	133	850	0	ENST00000263253.7:c.1807A>G	p.Arg603Gly	p.R603G	ENST00000263253	NM_001429.3	603	Aga/Gga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	285	489	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TBX3	0	MSKCC	GRCh37	12	115115435	115115437	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0021970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	100	536	0	ENST00000257566.3:c.889_891del	p.Asn297del	p.N297del	ENST00000257566	NM_016569.3	297	AAC/-																																																																														
TBX3	0	MSKCC	GRCh37	12	115112112	115112119	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAGGGG	AGGAGGGG	-			P-0021970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	97	598	0	ENST00000257566.3:c.1621_1628del	p.Pro541GlyfsTer148	p.P541Gfs*148	ENST00000257566	NM_016569.3	541	CCCCTCCTg/g																																																																														
CTCF	0	MSKCC	GRCh37	16	67644926	67644926	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	110	512	0	ENST00000264010.4:c.192del	p.Glu64AspfsTer10	p.E64Dfs*10	ENST00000264010	NM_006565.3	64	gAa/ga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528094	157528094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	140	425	0	ENST00000346085.5:c.5819C>T	p.Ser1940Leu	p.S1940L	ENST00000346085	NM_020732.3	1940	tCg/tTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89685283	89685283	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	94	400	0	ENST00000371953.3:c.178A>T	p.Lys60Ter	p.K60*	ENST00000371953	NM_000314.4	60	Aag/Tag																																																																														
RECQL	0	MSKCC	GRCh37	12	21636334	21636334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	42	590	0	ENST00000421138.2:c.676C>A	p.Gln226Lys	p.Q226K	ENST00000421138		226	Cag/Aag																																																																														
MGA	0	MSKCC	GRCh37	15	42046701	42046701	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	165	581	1	ENST00000219905.7:c.7075T>A	p.Ser2359Thr	p.S2359T	ENST00000219905	NM_001164273.1	2359	Tca/Aca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72863707	72863707	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	194	646	0	ENST00000268489.5:c.3500A>C	p.Glu1167Ala	p.E1167A	ENST00000268489	NM_006885.3	1167	gAg/gCg																																																																														
TP53	0	MSKCC	GRCh37	17	7579358	7579359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAAA			P-0021983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	290	659	0	ENST00000269305.4:c.324_328dup	p.Arg110LeufsTer15	p.R110Lfs*15	ENST00000269305	NM_001126112.2	110	cgt/cTTTCCgt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10248569	10248569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	145	670	0	ENST00000340748.4:c.4184G>T	p.Trp1395Leu	p.W1395L	ENST00000340748		1395	tGg/tTg																																																																														
ALK	0	MSKCC	GRCh37	2	29451758	29451758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	148	611	0	ENST00000389048.3:c.2807G>T	p.Gly936Val	p.G936V	ENST00000389048	NM_004304.4	936	gGa/gTa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916661	178916661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	64	367	0	ENST00000263967.3:c.48G>A	p.Met16Ile	p.M16I	ENST00000263967	NM_006218.2	16	atG/atA																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163276	32163276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021983-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	236	773	0	ENST00000375023.3:c.5950G>T	p.Asp1984Tyr	p.D1984Y	ENST00000375023	NM_004557.3	1984	Gac/Tac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021987-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			529	75	481	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
BBC3	0	MSKCC	GRCh37	19	47729950	47729950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021987-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	37	705	1	ENST00000449228.1:c.439G>A	p.Gly147Arg	p.G147R	ENST00000449228	NM_001127240.2	147	Ggg/Agg																																																																														
SETD2	0	MSKCC	GRCh37	3	47098729	47098730	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTT			P-0021987-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	64	643	0	ENST00000409792.3:c.6541_6544dup	p.Pro2182GlnfsTer3	p.P2182Qfs*3	ENST00000409792	NM_014159.6	2182	cct/cAACCct																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	274	743	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	99	440	0	ENST00000349496.5:c.95A>C	p.Asp32Ala	p.D32A	ENST00000349496	NM_001904.3	32	gAc/gCc																																																																														
ATR	0	MSKCC	GRCh37	3	142212147	142212147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	418	508	0	ENST00000350721.4:c.5905G>A	p.Val1969Ile	p.V1969I	ENST00000350721	NM_001184.3	1969	Gtt/Att																																																																														
MDC1	0	MSKCC	GRCh37	6	30675894	30675894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	213	899	0	ENST00000376406.3:c.2462C>T	p.Ala821Val	p.A821V	ENST00000376406	NM_014641.2	821	gCa/gTa																																																																														
ATRX	0	MSKCC	GRCh37	X	76931748	76931748	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	145	717	0	ENST00000373344.5:c.3782A>C	p.Asp1261Ala	p.D1261A	ENST00000373344	NM_000489.3	1261	gAt/gCt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021994-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			331	102	346	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0021994-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	77	349	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-																																																																														
GLI1	0	MSKCC	GRCh37	12	57857871	57857871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021994-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	49	376	0	ENST00000228682.2:c.190G>A	p.Glu64Lys	p.E64K	ENST00000228682	NM_005269.2	64	Gag/Aag																																																																														
DICER1	0	MSKCC	GRCh37	14	95582795	95582795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021994-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			179	54	192	0	ENST00000343455.3:c.1747G>A	p.Glu583Lys	p.E583K	ENST00000343455	NM_177438.2	583	Gaa/Aaa																																																																														
MSH6	0	MSKCC	GRCh37	2	48018218	48018218	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021994-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	57	428	0	ENST00000234420.5:c.413C>G	p.Pro138Arg	p.P138R	ENST00000234420	NM_000179.2	138	cCa/cGa																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739389	145739389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021994-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	72	414	0	ENST00000428558.2:c.1981G>C	p.Glu661Gln	p.E661Q	ENST00000428558	NM_004260.3	661	Gag/Cag																																																																														
EGFR	0	MSKCC	GRCh37	7	55273029	55273029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	229	957	0	ENST00000275493.2:c.3352G>A	p.Ala1118Thr	p.A1118T	ENST00000275493	NM_005228.3	1118	Gcg/Acg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59763239	59763239	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	258	857	0	ENST00000259008.2:c.2863A>C	p.Asn955His	p.N955H	ENST00000259008	NM_032043.2	955	Aat/Cat																																																																														
ASXL2	0	MSKCC	GRCh37	2	25990556	25990556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	248	855	0	ENST00000435504.4:c.671G>A	p.Ser224Asn	p.S224N	ENST00000435504		224	aGc/aAc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390111	89390111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	141	549	0	ENST00000336596.2:c.860G>A	p.Cys287Tyr	p.C287Y	ENST00000336596	NM_005233.5	287	tGt/tAt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31483703	31483703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	118	499	0	ENST00000344624.3:c.2029C>T	p.Pro677Ser	p.P677S	ENST00000344624		677	Cca/Tca																																																																														
VHL	0	MSKCC	GRCh37	3	10183764	10183764	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs5030804		P-0022018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	309	573	0	ENST00000256474.2:c.233A>G	p.Asn78Ser	p.N78S	ENST00000256474	NM_000551.3	78	aAt/aGt																																																																														
BRD4	23476	MSKCC	GRCh37	19	15383774	15383774	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	423	743	2	ENST00000263377.2:c.137del	p.Pro46ArgfsTer47	p.P46Rfs*47	ENST00000263377	NM_058243.2	46	cCg/cg																																																																														
BAP1	0	MSKCC	GRCh37	3	52436625	52436628	+	frameshift_variant	Frame_Shift_Del	DEL	AGCC	AGCC	-			P-0022018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	311	856	0	ENST00000460680.1:c.2046_2049del	p.Ala683ArgfsTer8	p.A683Rfs*8	ENST00000460680	NM_004656.3	682	ctGGCT/ct																																																																														
PBRM1	0	MSKCC	GRCh37	3	52678745	52678745	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	292	776	0	ENST00000394830.3:c.874del	p.Met292TrpfsTer8	p.M292Wfs*8	ENST00000394830	NM_018313.4	292	Atg/tg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32187956	32187956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	390	846	2	ENST00000375023.3:c.1265C>T	p.Pro422Leu	p.P422L	ENST00000375023	NM_004557.3	422	cCt/cTt																																																																														
DUSP4	0	MSKCC	GRCh37	8	29207588	29207589	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	279	487	0	ENST00000240100.2:c.207dup	p.Asn70Ter	p.N70*	ENST00000240100	NM_001394.6	69	-/T																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	146	543	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	188	580	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	129	466	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061205	38061205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	136	450	0	ENST00000250448.2:c.784C>T	p.Arg262Cys	p.R262C	ENST00000250448	NM_004496.3	262	Cgc/Tgc																																																																														
MLH1	0	MSKCC	GRCh37	3	37035132	37035132	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	98	370	0	ENST00000231790.2:c.94A>G	p.Ile32Val	p.I32V	ENST00000231790	NM_000249.3	32	Atc/Gtc																																																																														
NF1	0	MSKCC	GRCh37	17	29657375	29657375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	368	690	0	ENST00000358273.4:c.5671C>T	p.Gln1891Ter	p.Q1891*	ENST00000358273	NM_001042492.2	1891	Cag/Tag																																																																														
RUNX1	0	MSKCC	GRCh37	21	36231771	36231774	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TTCG	TTCG	-			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	223	642	1	ENST00000300305.3:c.610_613del	p.Arg204AspfsTer6	p.R204Dfs*6	ENST00000300305		204	CGAAga/ga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936103	178936103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	163	661	0	ENST00000263967.3:c.1645G>C	p.Asp549His	p.D549H	ENST00000263967	NM_006218.2	549	Gat/Cat																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160531	56160558	+	splice_region_variant,intron_variant	Splice_Region	DEL	ACGTACCTAATAAAAAAAAATGTTGTGA	ACGTACCTAATAAAAAAAAATGTTGTGA	G			P-0022021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	66	179	0	ENST00000399503.3:c.835-30_835-3delinsG		p.X279_splice	ENST00000399503	NM_005921.1	279																																																																															
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	350	732	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0022024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	158	667	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575102	48575102	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	78	556	2	ENST00000342988.3:c.296G>A	p.Trp99Ter	p.W99*	ENST00000342988	NM_005359.5	99	tGg/tAg																																																																														
HRAS	0	MSKCC	GRCh37	11	533150	533465	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGCTCAGGGCAGCTCTCCCCAAGGACCTCCGCCTTCCCCGGAGCTGTGTCGGCCCAGGACTGCAGGGCGTGAGCCCAGACCCCGGCCCTCGCCTCCCTCACTGCCCTGCCGTCCCGGGAGACTTACAGCGCGAGGGGCCGCTGGGTCACATGGGTCCCGGGGGGTCCCAGAGGGTCCCGGAGCTGGAGCTAGAGCCAGAGCGGCTGCCCTGTGTCAAGGGAGAGGGTCAGTGAGTGCTGCTCCCTGGCTGGGGCGGGGCGGGGCGGGTCCCTGGCTAGCTGTGGGGTGGAGAGCTGCCTCACCTGCCGGGTCTTG	TGGCTCAGGGCAGCTCTCCCCAAGGACCTCCGCCTTCCCCGGAGCTGTGTCGGCCCAGGACTGCAGGGCGTGAGCCCAGACCCCGGCCCTCGCCTCCCTCACTGCCCTGCCGTCCCGGGAGACTTACAGCGCGAGGGGCCGCTGGGTCACATGGGTCCCGGGGGGTCCCAGAGGGTCCCGGAGCTGGAGCTAGAGCCAGAGCGGCTGCCCTGTGTCAAGGGAGAGGGTCAGTGAGTGCTGCTCCCTGGCTGGGGCGGGGCGGGGCGGGTCCCTGGCTAGCTGTGGGGTGGAGAGCTGCCTCACCTGCCGGGTCTTG	-			P-0022034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	187	107	0	ENST00000311189.7:c.438_450+303del		p.X146_splice	ENST00000311189		146																																																																															
ERRFI1	0	MSKCC	GRCh37	1	8073358	8073358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	193	537	0	ENST00000377482.5:c.1301C>T	p.Ser434Leu	p.S434L	ENST00000377482	NM_018948.3	434	tCa/tTa																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137826	64137826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	291	816	0	ENST00000334205.4:c.1927G>A	p.Val643Ile	p.V643I	ENST00000334205	NM_003942.2	643	Gta/Ata																																																																														
TSHR	0	MSKCC	GRCh37	14	81574753	81574753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	108	380	0	ENST00000298171.2:c.649G>A	p.Asp217Asn	p.D217N	ENST00000298171	NM_000369.2	217	Gac/Aac																																																																														
BLM	0	MSKCC	GRCh37	15	91292841	91292841	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	114	492	0	ENST00000355112.3:c.343C>G	p.Pro115Ala	p.P115A	ENST00000355112	NM_000057.2	115	Ccg/Gcg																																																																														
NSD1	0	MSKCC	GRCh37	5	176721015	176721015	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	28	482	0	ENST00000439151.2:c.6646G>T	p.Gly2216Trp	p.G2216W	ENST00000439151	NM_022455.4	2216	Ggg/Tgg																																																																														
PREX2	0	MSKCC	GRCh37	8	69033181	69033181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	114	537	1	ENST00000288368.4:c.3621G>T	p.Lys1207Asn	p.K1207N	ENST00000288368	NM_024870.2	1207	aaG/aaT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	57	685	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31369165	31369165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	20	581	0	ENST00000328111.2:c.149G>A	p.Arg50Lys	p.R50K	ENST00000328111	NM_006892.3	50	aGa/aAa																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964448	70964448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	31	646	1	ENST00000276594.2:c.1580C>A	p.Ala527Glu	p.A527E	ENST00000276594	NM_024504.3	527	gCa/gAa																																																																														
ERG	0	MSKCC	GRCh37	21	39817388	39817388	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	13	598	1	ENST00000288319.7:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000288319	NM_182918.3	59	Caa/Taa																																																																														
PTEN	0	MSKCC	GRCh37	10	89624275	89624275	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	173	404	0	ENST00000371953.3:c.49C>T	p.Gln17Ter	p.Q17*	ENST00000371953	NM_000314.4	17	Caa/Taa																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932133	36932133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	45	446	0	ENST00000361632.4:c.2336G>A	p.Gly779Asp	p.G779D	ENST00000361632		779	gGc/gAc																																																																														
ATM	0	MSKCC	GRCh37	11	108204620	108204620	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	21	291	1	ENST00000278616.4:c.7937del	p.Asn2646IlefsTer14	p.N2646Ifs*14	ENST00000278616	NM_000051.3	2645	atA/at																																																																														
SETD2	0	MSKCC	GRCh37	3	47164164	47164189	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGTCTAATTCCTTAATACTATCAT	AGAGTCTAATTCCTTAATACTATCAT	-			P-0022093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	83	364	0	ENST00000409792.3:c.1937_1962del	p.His646LeufsTer3	p.H646Lfs*3	ENST00000409792	NM_014159.6	646	cATGATAGTATTAAGGAATTAGACTCT/c																																																																														
PBRM1	0	MSKCC	GRCh37	3	52595879	52595879	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	280	639	1	ENST00000394830.3:c.4036A>T	p.Lys1346Ter	p.K1346*	ENST00000394830	NM_018313.4	1346	Aag/Tag																																																																														
FAT1	0	MSKCC	GRCh37	4	187540586	187540597	+	inframe_deletion	In_Frame_Del	DEL	TCATTGAGGTCG	TCATTGAGGTCG	-			P-0022093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	83	325	0	ENST00000441802.2:c.7143_7154del	p.Asp2382_Asp2385del	p.D2382_D2385del	ENST00000441802	NM_005245.3	2381	acCGACCTCAATGAt/act																																																																														
ROS1	0	MSKCC	GRCh37	6	117639382	117639382	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	41	530	1	ENST00000368508.3:c.5974A>C	p.Ile1992Leu	p.I1992L	ENST00000368508	NM_002944.2	1992	Att/Ctt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53246331	53246332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCA			P-0022093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	219	282	0	ENST00000375401.3:c.647_650dup	p.Gln217HisfsTer4	p.Q217Hfs*4	ENST00000375401	NM_004187.3	217	cag/caTGCAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	244	413	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061250	38061250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	132	756	0	ENST00000250448.2:c.739C>T	p.His247Tyr	p.H247Y	ENST00000250448	NM_004496.3	247	Cac/Tac																																																																														
PBRM1	0	MSKCC	GRCh37	3	52662954	52662954	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	138	540	1	ENST00000394830.3:c.1399T>A	p.Ser467Thr	p.S467T	ENST00000394830	NM_018313.4	467	Tca/Aca																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177872	56177873	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0022115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	97	415	0	ENST00000399503.3:c.2846_2847del	p.Thr949ArgfsTer54	p.T949Rfs*54	ENST00000399503	NM_005921.1	949	ACa/a																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56189432	56189433	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTAGAAC			P-0022115-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	202	636	0	ENST00000399503.3:c.4467_4473dup	p.Gln1492ArgfsTer33	p.Q1492Rfs*33	ENST00000399503	NM_005921.1	1488	-/TTAGAAC																																																																														
NF1	0	MSKCC	GRCh37	17	29559126	29559126	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	105	268	1	ENST00000358273.4:c.3233C>G	p.Ser1078Ter	p.S1078*	ENST00000358273	NM_001042492.2	1078	tCa/tGa																																																																														
SETD2	0	MSKCC	GRCh37	3	47164522	47164522	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	54	492	0	ENST00000409792.3:c.1604A>G	p.Asn535Ser	p.N535S	ENST00000409792	NM_014159.6	535	aAt/aGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577523	7577524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	250	904	0	ENST00000269305.4:c.757dup	p.Thr253AsnfsTer11	p.T253Nfs*11	ENST00000269305	NM_001126112.2	253	acc/aAcc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41280628	41280628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	107	693	0	ENST00000349496.5:c.2141C>A	p.Pro714His	p.P714H	ENST00000349496	NM_001904.3	714	cCt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0022138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	160	994	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
DIS3	0	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	42	707	0	ENST00000377767.4:c.1462G>A	p.Asp488Asn	p.D488N	ENST00000377767	NM_014953.3	488	Gat/Aat																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591937	48591937	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	67	632	0	ENST00000342988.3:c.1100T>C	p.Leu367Pro	p.L367P	ENST00000342988	NM_005359.5	367	cTc/cCc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	119	801	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	240	539	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	293	948	4	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
PDCD1	0	MSKCC	GRCh37	2	242793340	242793340	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201540918		P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	72	1262	1	ENST00000334409.5:c.737C>T	p.Thr246Met	p.T246M	ENST00000334409	NM_005018.2	246	aCg/aTg																																																																														
RHEB	0	MSKCC	GRCh37	7	151188085	151188085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	315	700	3	ENST00000262187.5:c.68C>T	p.Thr23Met	p.T23M	ENST00000262187	NM_005614.3	23	aCg/aTg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176118212	176118212	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	31	522	0	ENST00000367669.3:c.763-2A>G		p.X255_splice	ENST00000367669	NM_022457.5	255																																																																															
APC	0	MSKCC	GRCh37	5	112174469	112174470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	65	402	0	ENST00000257430.4:c.3179dup	p.Gln1062ThrfsTer3	p.Q1062Tfs*3	ENST00000257430	NM_000038.5	1060	ata/aTta																																																																														
FGFR1	0	MSKCC	GRCh37	8	38279378	38279378	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	46	1094	0	ENST00000425967.3:c.1111A>G	p.Thr371Ala	p.T371A	ENST00000425967	NM_001174067.1	371	Acg/Gcg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	50	577	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0022155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	60	659	0	ENST00000269305.4:c.782+1G>C		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	517	760	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928226	178928226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	339	466	2	ENST00000263967.3:c.1412C>T	p.Pro471Leu	p.P471L	ENST00000263967	NM_006218.2	471	cCa/cTa																																																																														
RB1	0	MSKCC	GRCh37	13	48954222	48954222	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	66	429	0	ENST00000267163.4:c.1421+2T>C		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
PPP4R2	0	MSKCC	GRCh37	3	73114760	73114760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	41	169	1	ENST00000356692.5:c.1141G>A	p.Glu381Lys	p.E381K	ENST00000356692		381	Gaa/Aaa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952085	+	missense_variant	Missense_Mutation	DNP	CA	CA	TG			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	313	441	1	ENST00000263967.3:c.3139_3140inv	p.His1047Cys	p.H1047C	ENST00000263967	NM_006218.2	1047	CAt/TGt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177807	56177807	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	145	370	1	ENST00000399503.3:c.2782del	p.Ser928LeufsTer9	p.S928Lfs*9	ENST00000399503	NM_005921.1	927	aTt/at																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56189392	56189393	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	318	673	0	ENST00000399503.3:c.4426_4427del	p.His1476PhefsTer46	p.H1476Ffs*46	ENST00000399503	NM_005921.1	1475	tCA/t																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523169	176523169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	434	686	3	ENST00000292408.4:c.1933A>G	p.Lys645Glu	p.K645E	ENST00000292408	NM_213647.1	645	Aaa/Gaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	65	637	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	91	634	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	82	838	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023066	27023067	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	11	121	0	ENST00000324856.7:c.172_173del	p.Ser58ArgfsTer52	p.S58Rfs*52	ENST00000324856	NM_006015.4	58	AGc/c																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101427	27101427	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	71	613	0	ENST00000324856.7:c.4709C>G	p.Ser1570Cys	p.S1570C	ENST00000324856	NM_006015.4	1570	tCt/tGt																																																																														
SETD2	0	MSKCC	GRCh37	3	47098795	47098795	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	111	803	1	ENST00000409792.3:c.6479del	p.Pro2160ArgfsTer88	p.P2160Rfs*88	ENST00000409792	NM_014159.6	2160	cCg/cg																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324681	31324681	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	60	436	0	ENST00000412585.2:c.127G>T	p.Glu43Ter	p.E43*	ENST00000412585	NM_005514.6	43	Gag/Tag																																																																														
LATS1	0	MSKCC	GRCh37	6	150004331	150004331	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	78	567	0	ENST00000253339.5:c.1894C>T	p.Gln632Ter	p.Q632*	ENST00000253339		632	Caa/Taa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522422	157522422	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	77	797	0	ENST00000346085.5:c.4694A>T	p.Asn1565Ile	p.N1565I	ENST00000346085	NM_020732.3	1565	aAc/aTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151835937	151835937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	64	653	0	ENST00000262189.6:c.14587G>A	p.Glu4863Lys	p.E4863K	ENST00000262189	NM_170606.2	4863	Gag/Aag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151846224	151846224	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	65	530	0	ENST00000262189.6:c.12788C>G	p.Ser4263Ter	p.S4263*	ENST00000262189	NM_170606.2	4263	tCa/tGa																																																																														
AR	0	MSKCC	GRCh37	X	66766134	66766135	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCCAC			P-0022174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	61	629	0	ENST00000374690.3:c.1147_1152dup	p.Pro383_His384dup	p.P383_H384dup	ENST00000374690	NM_000044.3	383	-/CCCCAC																																																																														
DNMT1	0	MSKCC	GRCh37	19	10267112	10267114	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0022181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	58	887	0	ENST00000340748.4:c.1304_1306del	p.Phe435del	p.F435del	ENST00000340748		435	tTTTct/tct																																																																														
WWTR1	0	MSKCC	GRCh37	3	149374963	149374963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	191	1215	1	ENST00000360632.3:c.131G>A	p.Arg44Gln	p.R44Q	ENST00000360632	NM_015472.4	44	cGg/cAg																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430553	78430554	+	splice_donor_variant	Splice_Site	DEL	AC	AC	T			P-0022181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	90	565	0	ENST00000370768.2:c.735+1_735+2delinsA		p.X245_splice	ENST00000370768	NM_003902.3	245																																																																															
RUNX1	0	MSKCC	GRCh37	21	36164611	36164611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	260	564	0	ENST00000300305.3:c.1264G>A	p.Glu422Lys	p.E422K	ENST00000300305		422	Gag/Aag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3801796	3801796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	232	555	0	ENST00000262367.5:c.3710G>A	p.Cys1237Tyr	p.C1237Y	ENST00000262367	NM_004380.2	1237	tGt/tAt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103519130	103519130	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	112	528	0	ENST00000355739.4:c.2468G>C	p.Arg823Thr	p.R823T	ENST00000355739	NM_000123.3	823	aGa/aCa																																																																														
BAP1	0	MSKCC	GRCh37	3	52442612	52442612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	108	311	0	ENST00000460680.1:c.133G>A	p.Gly45Arg	p.G45R	ENST00000460680	NM_004656.3	45	Gga/Aga																																																																														
IRS2	0	MSKCC	GRCh37	13	110436828	110436828	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	103	815	0	ENST00000375856.3:c.1573G>C	p.Ala525Pro	p.A525P	ENST00000375856	NM_003749.2	525	Gcg/Ccg																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149511631	149511631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	183	630	0	ENST00000261799.4:c.1154G>A	p.Arg385His	p.R385H	ENST00000261799	NM_002609.3	385	cGc/cAc																																																																														
PALB2	0	MSKCC	GRCh37	16	23640533	23640533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	335	693	0	ENST00000261584.4:c.2578G>C	p.Glu860Gln	p.E860Q	ENST00000261584	NM_024675.3	860	Gag/Cag																																																																														
CDK12	0	MSKCC	GRCh37	17	37673810	37673810	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0022252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	652	572	0	ENST00000447079.4:c.2963+1G>C		p.X988_splice	ENST00000447079	NM_015083.1	988																																																																															
TMPRSS2	0	MSKCC	GRCh37	21	42839681	42839682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTCC			P-0022252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	375	712	0	ENST00000398585.3:c.1554_1557dup	p.Trp520GlyfsTer40	p.W520Gfs*40	ENST00000398585	NM_001135099.1	519	-/GGAC																																																																														
SYK	0	MSKCC	GRCh37	9	93626922	93626922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	68	638	0	ENST00000375746.1:c.769G>A	p.Val257Ile	p.V257I	ENST00000375746	NM_001174167.1	257	Gtc/Atc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	14	323	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	15	474	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
SPOP	0	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	28	498	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
ATRX	0	MSKCC	GRCh37	X	76931731	76931731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	40	206	0	ENST00000373344.5:c.3799C>T	p.Pro1267Ser	p.P1267S	ENST00000373344	NM_000489.3	1267	Cct/Tct																																																																														
PAK7	0	MSKCC	GRCh37	20	9561327	9561327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	19	584	0	ENST00000353224.5:c.455A>G	p.Tyr152Cys	p.Y152C	ENST00000353224	NM_177990.2	152	tAt/tGt																																																																														
BAP1	0	MSKCC	GRCh37	3	52437818	52437818	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	88	796	1	ENST00000460680.1:c.1343T>A	p.Leu448Ter	p.L448*	ENST00000460680	NM_004656.3	448	tTg/tAg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0022303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	113	586	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																																																														
SLX4	0	MSKCC	GRCh37	16	3640758	3640758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	110	601	0	ENST00000294008.3:c.2881C>T	p.Pro961Ser	p.P961S	ENST00000294008	NM_032444.2	961	Cct/Tct																																																																														
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	196	825	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
MTOR	0	MSKCC	GRCh37	1	11199365	11199365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	66	495	1	ENST00000361445.4:c.5126G>A	p.Arg1709His	p.R1709H	ENST00000361445	NM_004958.3	1709	cGc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711958	89711958	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	73	526	0	ENST00000371953.3:c.576del	p.Leu193CysfsTer6	p.L193Cfs*6	ENST00000371953	NM_000314.4	192	gcA/gc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115801	8115801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	120	649	0	ENST00000346208.3:c.1147G>C	p.Glu383Gln	p.E383Q	ENST00000346208		383	Gag/Cag																																																																														
KMT2A	0	MSKCC	GRCh37	11	118342776	118342776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	27	293	0	ENST00000534358.1:c.902G>A	p.Arg301Gln	p.R301Q	ENST00000534358	NM_005933.3	301	cGa/cAa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32915155	32915155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	26	657	1	ENST00000380152.3:c.6663C>G	p.Asn2221Lys	p.N2221K	ENST00000380152		2221	aaC/aaG																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827756	72827756	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	36	563	0	ENST00000268489.5:c.8825A>G	p.Asp2942Gly	p.D2942G	ENST00000268489	NM_006885.3	2942	gAt/gGt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15989672	15989682	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGTGGCCT	GGCGGTGGCCT	-			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	83	393	0	ENST00000268712.3:c.3091_3101del	p.Arg1031ProfsTer36	p.R1031Pfs*36	ENST00000268712	NM_006311.3	1031	AGGCCACCGCCc/c																																																																														
ALK	0	MSKCC	GRCh37	2	29754828	29754828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	77	505	0	ENST00000389048.3:c.1107C>A	p.Asn369Lys	p.N369K	ENST00000389048	NM_004304.4	369	aaC/aaA																																																																														
XPO1	0	MSKCC	GRCh37	2	61715845	61715846	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	97	606	0	ENST00000401558.2:c.2083_2084del	p.Asn695CysfsTer24	p.N695Cfs*24	ENST00000401558	NM_003400.3	695	AAt/t																																																																														
APC	0	MSKCC	GRCh37	5	112170737	112170741	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAC	TGCAC	-			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	59	653	0	ENST00000257430.4:c.1834_1838del	p.Ala612CysfsTer20	p.A612Cfs*20	ENST00000257430	NM_000038.5	611	ggTGCACtt/ggtt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146975	38146976	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0022313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	85	977	0	ENST00000317025.8:c.3166_3167del	p.Glu1056LysfsTer2	p.E1056Kfs*2	ENST00000317025	NM_023034.1	1056	GAa/a																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	359	904	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0022323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	240	699	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
RECQL	0	MSKCC	GRCh37	12	21639506	21639506	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	99	420	2	ENST00000421138.2:c.408del	p.Ile137PhefsTer4	p.I137Ffs*4	ENST00000421138		136	gtC/gt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18274136	18274136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	52	837	1	ENST00000222254.8:c.1354C>T	p.Gln452Ter	p.Q452*	ENST00000222254	NM_005027.3	452	Cag/Tag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096078	178096078	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	241	538	0	ENST00000397062.3:c.1253A>C	p.His418Pro	p.H418P	ENST00000397062	NM_006164.4	418	cAt/cCt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40789991	40789991	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0022323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	334	595	0	ENST00000373198.4:c.2739+1G>T		p.X913_splice	ENST00000373198	NM_133170.3	913																																																																															
RAD50	0	MSKCC	GRCh37	5	131977884	131977884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022323-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	36	474	1	ENST00000265335.6:c.3767G>A	p.Arg1256His	p.R1256H	ENST00000265335		1256	cGc/cAc																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	199	755	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																														
ETV1	0	MSKCC	GRCh37	7	13978868	13978868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	224	506	0	ENST00000405192.2:c.239C>A	p.Ala80Asp	p.A80D	ENST00000405192	NM_001163147.1	80	gCt/gAt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123325081	123325081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	134	845	0	ENST00000358487.5:c.247A>G	p.Asn83Asp	p.N83D	ENST00000358487	NM_000141.4	83	Aat/Gat																																																																														
IRS1	0	MSKCC	GRCh37	2	227660594	227660594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	252	760	0	ENST00000305123.5:c.2861G>T	p.Trp954Leu	p.W954L	ENST00000305123	NM_005544.2	954	tGg/tTg																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056388	26056388	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	339	508	0	ENST00000343677.2:c.269A>C	p.Lys90Thr	p.K90T	ENST00000343677	NM_005319.3	90	aAg/aCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	140	907	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
RB1	0	MSKCC	GRCh37	13	48937067	48937067	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	49	363	0	ENST00000267163.4:c.837del	p.Glu280AsnfsTer6	p.E280Nfs*6	ENST00000267163	NM_000321.2	279	Aaa/aa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678491	88678491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	152	573	1	ENST00000360948.2:c.1045C>T	p.His349Tyr	p.H349Y	ENST00000360948	NM_001012338.2	349	Cat/Tat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0022353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	25	540	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214862	36214862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	36	999	1	ENST00000222270.7:c.3288G>T	p.Glu1096Asp	p.E1096D	ENST00000222270	NM_014727.1	1096	gaG/gaT																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915952	127915952	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	205	713	0	ENST00000373547.4:c.529C>T	p.Arg177Ter	p.R177*	ENST00000373547	NM_002721.4	177	Cga/Tga																																																																														
TSC2	0	MSKCC	GRCh37	16	2107104	2107104	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0022376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	59	930	0	ENST00000219476.3:c.775-2A>G		p.X259_splice	ENST00000219476	NM_000548.3	259																																																																															
TP53	0	MSKCC	GRCh37	17	7578541	7578542	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	753	1078	0	ENST00000269305.4:c.388_389insA	p.Leu130HisfsTer19	p.L130Hfs*19	ENST00000269305	NM_001126112.2	130	ctc/cAtc																																																																														
APC	0	MSKCC	GRCh37	5	112111356	112111357	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0022376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	111	389	0	ENST00000257430.4:c.454_455del	p.Glu152LysfsTer15	p.E152Kfs*15	ENST00000257430	NM_000038.5	151	gaAGaa/gaaa																																																																														
TSC2	0	MSKCC	GRCh37	16	2133751	2133752	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0022376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	252	968	1	ENST00000219476.3:c.3939_3940delinsA	p.Pro1315GlnfsTer10	p.P1315Qfs*10	ENST00000219476	NM_000548.3	1313	gaGCcc/gaAcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	231	771	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7572926	7572929	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	GTCA	GTCA	-			P-0022424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	600	241	2	ENST00000269305.4:c.1180_*1del		p.*394*	ENST00000269305	NM_001126112.2	394																																																																															
PDGFRA	0	MSKCC	GRCh37	4	55130059	55130059	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	243	724	0	ENST00000257290.5:c.593T>G	p.Phe198Cys	p.F198C	ENST00000257290	NM_006206.4	198	tTc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	202	684	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	95	600	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163297	32163297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	326	1013	0	ENST00000375023.3:c.5929G>A	p.Glu1977Lys	p.E1977K	ENST00000375023	NM_004557.3	1977	Gag/Aag																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	167	711	4	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	149	780	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																														
MYC	0	MSKCC	GRCh37	8	128750924	128750924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	229	712	0	ENST00000377970.2:c.461C>T	p.Ser154Leu	p.S154L	ENST00000377970	NM_002467.4	154	tCg/tTg																																																																														
RIT1	0	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	251	726	0	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA																																																																														
IRS1	3667	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024227751		P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	221	598	0	ENST00000305123.5:c.109G>A	p.Glu37Lys	p.E37K	ENST00000305123	NM_005544.2	37	Gag/Aag																																																																														
ATRX	0	MSKCC	GRCh37	X	76855277	76855277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	15	306	0	ENST00000373344.5:c.5710G>A	p.Glu1904Lys	p.E1904K	ENST00000373344	NM_000489.3	1904	Gaa/Aaa																																																																														
PPM1D	0	MSKCC	GRCh37	17	58678029	58678029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	130	397	0	ENST00000305921.3:c.254C>T	p.Ser85Leu	p.S85L	ENST00000305921	NM_003620.3	85	tCg/tTg																																																																														
KDM5A	0	MSKCC	GRCh37	12	495124	495124	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	148	574	0	ENST00000399788.2:c.182T>C	p.Phe61Ser	p.F61S	ENST00000399788	NM_001042603.1	61	tTt/tCt																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871218	12871218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	97	325	0	ENST00000228872.4:c.445G>A	p.Ala149Thr	p.A149T	ENST00000228872	NM_004064.3	149	Gca/Aca																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986776	36986776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	99	271	0	ENST00000354822.5:c.913C>T	p.Pro305Ser	p.P305S	ENST00000354822	NM_001079668.2	305	Ccc/Tcc																																																																														
GREM1	0	MSKCC	GRCh37	15	33023151	33023151	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	200	678	0	ENST00000300177.4:c.260A>C	p.Lys87Thr	p.K87T	ENST00000300177	NM_001191322.1	87	aAa/aCa																																																																														
BLM	0	MSKCC	GRCh37	15	91293279	91293279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	129	524	0	ENST00000355112.3:c.781C>T	p.His261Tyr	p.H261Y	ENST00000355112	NM_000057.2	261	Cat/Tat																																																																														
CREBBP	0	MSKCC	GRCh37	16	3832829	3832829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	236	759	0	ENST00000262367.5:c.1429G>A	p.Asp477Asn	p.D477N	ENST00000262367	NM_004380.2	477	Gac/Aac																																																																														
FANCA	0	MSKCC	GRCh37	16	89831423	89831423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	252	853	0	ENST00000389301.3:c.2653G>A	p.Glu885Lys	p.E885K	ENST00000389301	NM_000135.2	885	Gag/Aag																																																																														
RAD51C	0	MSKCC	GRCh37	17	56774181	56774181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	195	682	0	ENST00000337432.4:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000337432	NM_058216.2	178	Cag/Tag																																																																														
SOX9	0	MSKCC	GRCh37	17	70118890	70118890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	255	807	0	ENST00000245479.2:c.462C>G	p.Phe154Leu	p.F154L	ENST00000245479	NM_000346.3	154	ttC/ttG																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39537549	39537549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	109	477	0	ENST00000262039.4:c.83G>C	p.Gly28Ala	p.G28A	ENST00000262039	NM_002647.2	28	gGg/gCg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211624	36211624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	198	639	0	ENST00000222270.7:c.1375C>T	p.Pro459Ser	p.P459S	ENST00000222270	NM_014727.1	459	Cct/Tct																																																																														
KMT2B	0	MSKCC	GRCh37	19	36218827	36218827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	338	984	1	ENST00000222270.7:c.4438G>A	p.Glu1480Lys	p.E1480K	ENST00000222270	NM_014727.1	1480	Gag/Aag																																																																														
ERCC2	2068	MSKCC	GRCh37	19	45855787	45855787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	259	812	0	ENST00000391945.4:c.2023G>T	p.Gly675Cys	p.G675C	ENST00000391945	NM_000400.3	675	Ggc/Tgc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470018	25470018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	179	569	0	ENST00000264709.3:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000264709	NM_175629.2	342	Gag/Aag																																																																														
ASXL2	0	MSKCC	GRCh37	2	25994311	25994311	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	184	574	0	ENST00000435504.4:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000435504		168	Cag/Tag																																																																														
ASXL2	0	MSKCC	GRCh37	2	26022319	26022322	+	frameshift_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	263	728	0	ENST00000435504.4:c.335_338del	p.Glu112AlafsTer54	p.E112Afs*54	ENST00000435504		112	gAGAAc/gc																																																																														
ALK	0	MSKCC	GRCh37	2	29456548	29456577	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATTAACTGGTTTGTCTGTAGAAACAAAAA	GATTAACTGGTTTGTCTGTAGAAACAAAAA	-			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	159	821	0	ENST00000389048.3:c.2356-15_2370del		p.X786_splice	ENST00000389048	NM_004304.4	786																																																																															
MSH2	0	MSKCC	GRCh37	2	47707902	47707902	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	132	687	0	ENST00000233146.2:c.2526G>C	p.Glu842Asp	p.E842D	ENST00000233146	NM_000251.2	842	gaG/gaC																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727078	40727078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	215	745	2	ENST00000373198.4:c.3886G>A	p.Glu1296Lys	p.E1296K	ENST00000373198	NM_133170.3	1296	Gag/Aag																																																																														
GATA2	0	MSKCC	GRCh37	3	128200780	128200780	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143554523		P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	263	725	1	ENST00000341105.2:c.1025C>T	p.Ala342Val	p.A342V	ENST00000341105	NM_032638.4	342	gCc/gTc																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502778	186502778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	227	635	1	ENST00000323963.5:c.236C>T	p.Ser79Leu	p.S79L	ENST00000323963		79	tCa/tTa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902968	1902968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	209	679	0	ENST00000382891.5:c.587C>T	p.Ser196Leu	p.S196L	ENST00000382891	NM_133335.3	196	tCa/tTa																																																																														
PLK2	0	MSKCC	GRCh37	5	57754303	57754303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	203	694	1	ENST00000274289.3:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000274289	NM_006622.3	183	cGa/cAa																																																																														
RAD50	0	MSKCC	GRCh37	5	131925402	131925402	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	82	351	0	ENST00000265335.6:c.1325T>C	p.Ile442Thr	p.I442T	ENST00000265335		442	aTa/aCa																																																																														
NPM1	0	MSKCC	GRCh37	5	170817130	170817130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	131	497	0	ENST00000296930.5:c.134G>A	p.Arg45Lys	p.R45K	ENST00000296930	NM_002520.6	45	aGa/aAa																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324127	31324127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	140	468	0	ENST00000412585.2:c.436G>A	p.Asp146Asn	p.D146N	ENST00000412585	NM_005514.6	146	Gat/Aat																																																																														
LATS1	0	MSKCC	GRCh37	6	150001329	150001329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	145	867	1	ENST00000253339.5:c.2275G>A	p.Glu759Lys	p.E759K	ENST00000253339		759	Gaa/Aaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845511	151845511	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	294	807	0	ENST00000262189.6:c.13501A>G	p.Met4501Val	p.M4501V	ENST00000262189	NM_170606.2	4501	Atg/Gtg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942741	44942741	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	239	361	0	ENST00000377967.4:c.3321del	p.Ala1108LeufsTer12	p.A1108Lfs*12	ENST00000377967	NM_021140.2	1107	ccT/cc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942846	44942846	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	245	398	0	ENST00000377967.4:c.3426A>C	p.Arg1142Ser	p.R1142S	ENST00000377967	NM_021140.2	1142	agA/agC																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0022450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	31	913	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ETV6	0	MSKCC	GRCh37	12	12037474	12037474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	12	549	0	ENST00000396373.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000396373	NM_001987.4	369	Cgg/Tgg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453134	140453136	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0022450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	47	702	0	ENST00000288602.6:c.1799_1801del	p.Val600_Lys601delinsGlu	p.V600_K601delinsE	ENST00000288602	NM_004333.4	600	gTGAaa/gaa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	70	716	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	70	716	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	103	959	0	ENST00000269305.4:c.1010G>C	p.Arg337Pro	p.R337P	ENST00000269305	NM_001126112.2	337	cGc/cCc																																																																														
NUP93	0	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	54	738	2	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610285	10610285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	143	1123	1	ENST00000171111.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000171111	NM_203500.1	142	aCg/aTg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	42	527	1	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	70	716	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356382	66356382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	41	771	0	ENST00000273854.3:c.1115G>T	p.Ser372Ile	p.S372I	ENST00000273854	NM_004439.5	372	aGt/aTt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120478211	120478211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	61	679	0	ENST00000256646.2:c.3539A>T	p.Gln1180Leu	p.Q1180L	ENST00000256646	NM_024408.3	1180	cAg/cTg																																																																														
FH	0	MSKCC	GRCh37	1	241667492	241667492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	29	549	1	ENST00000366560.3:c.958G>T	p.Ala320Ser	p.A320S	ENST00000366560	NM_000143.3	320	Gct/Tct																																																																														
FGFR2	0	MSKCC	GRCh37	10	123325200	123325200	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	53	924	0	ENST00000358487.5:c.128A>T	p.Gln43Leu	p.Q43L	ENST00000358487	NM_000141.4	43	cAa/cTa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71941285	71941285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	48	1044	1	ENST00000298229.2:c.1060G>A	p.Glu354Lys	p.E354K	ENST00000298229	NM_001567.3	354	Gag/Aag																																																																														
DIS3	0	MSKCC	GRCh37	13	73345933	73345933	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs201039391		P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	50	628	0	ENST00000377767.4:c.1605G>T	p.Lys535Asn	p.K535N	ENST00000377767	NM_014953.3	535	aaG/aaT																																																																														
PRKD1	0	MSKCC	GRCh37	14	30108041	30108041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	64	953	0	ENST00000331968.5:c.766C>A	p.Pro256Thr	p.P256T	ENST00000331968	NM_002742.2	256	Cca/Aca																																																																														
SOX9	0	MSKCC	GRCh37	17	70119928	70119928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	35	735	0	ENST00000245479.2:c.930C>A	p.His310Gln	p.H310Q	ENST00000245479	NM_000346.3	310	caC/caA																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11094931	11094931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	126	936	0	ENST00000344626.4:c.104C>A	p.Ser35Ter	p.S35*	ENST00000344626	NM_003072.3	35	tCg/tAg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276310	15276310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	111	1083	1	ENST00000263388.2:c.5684G>T	p.Arg1895Leu	p.R1895L	ENST00000263388	NM_000435.2	1895	cGc/cTc																																																																														
SOS1	0	MSKCC	GRCh37	2	39281917	39281917	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	40	714	0	ENST00000402219.2:c.558A>T	p.Leu186Phe	p.L186F	ENST00000402219	NM_005633.3	186	ttA/ttT																																																																														
CUL3	0	MSKCC	GRCh37	2	225343063	225343063	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	37	796	1	ENST00000264414.4:c.2030-1G>T		p.X677_splice	ENST00000264414	NM_003590.4	677																																																																															
PDCD1	0	MSKCC	GRCh37	2	242793308	242793308	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	88	1118	0	ENST00000334409.5:c.769A>G	p.Met257Val	p.M257V	ENST00000334409	NM_005018.2	257	Atg/Gtg																																																																														
IL7R	0	MSKCC	GRCh37	5	35873709	35873709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	68	712	0	ENST00000303115.3:c.665C>A	p.Pro222Gln	p.P222Q	ENST00000303115	NM_002185.3	222	cCa/cAa																																																																														
IL7R	0	MSKCC	GRCh37	5	35876121	35876121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	76	787	3	ENST00000303115.3:c.913G>T	p.Asp305Tyr	p.D305Y	ENST00000303115	NM_002185.3	305	Gac/Tac																																																																														
HGF	0	MSKCC	GRCh37	7	81359075	81359075	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	48	659	0	ENST00000222390.5:c.886A>G	p.Thr296Ala	p.T296A	ENST00000222390	NM_000601.4	296	Act/Gct																																																																														
SMO	0	MSKCC	GRCh37	7	128850853	128850853	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	97	1064	0	ENST00000249373.3:c.1700A>G	p.Lys567Arg	p.K567R	ENST00000249373	NM_005631.4	567	aAg/aGg																																																																														
SMO	0	MSKCC	GRCh37	7	128850951	128850951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	74	720	0	ENST00000249373.3:c.1798G>T	p.Val600Leu	p.V600L	ENST00000249373	NM_005631.4	600	Gtg/Ttg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205323	38205323	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	71	1409	0	ENST00000317025.8:c.367G>C	p.Glu123Gln	p.E123Q	ENST00000317025	NM_023034.1	123	Gaa/Caa																																																																														
BCOR	0	MSKCC	GRCh37	X	39933439	39933439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	79	966	0	ENST00000378444.4:c.1160G>T	p.Arg387Met	p.R387M	ENST00000378444	NM_001123385.1	387	aGg/aTg																																																																														
MED12	0	MSKCC	GRCh37	X	70360548	70360548	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	50	969	0	ENST00000374080.3:c.6108G>T	p.Gln2036His	p.Q2036H	ENST00000374080		2036	caG/caT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			641	49	703	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	33	411	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			761	61	531	0	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99154351	99154351	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022461-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			695	44	484	0	ENST00000074304.5:c.494del	p.Asn165ThrfsTer4	p.N165Tfs*4	ENST00000074304	NM_001134224.1	165	Aac/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	603	618	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120478157	120478161	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTG	TTCTG	-			P-0022470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	450	413	0	ENST00000256646.2:c.3589_3593del	p.Gln1197TrpfsTer6	p.Q1197Wfs*6	ENST00000256646	NM_024408.3	1197	CAGAAt/t																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0022477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	126	340	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	46	307	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	125	525	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	36	380	0	ENST00000263967.3:c.333G>C	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaC																																																																														
TP53	0	MSKCC	GRCh37	17	7579413	7579413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	46	684	0	ENST00000269305.4:c.274C>T	p.Pro92Ser	p.P92S	ENST00000269305	NM_001126112.2	92	Ccc/Tcc																																																																														
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	76	1039	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600323	10600323	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0022505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	64	789	0	ENST00000171111.5:c.1531+1G>T		p.X511_splice	ENST00000171111	NM_203500.1	511																																																																															
CDH1	0	MSKCC	GRCh37	16	68772254	68772255	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0022518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	48	1214	0	ENST00000261769.5:c.106_107del	p.Ser36LeufsTer22	p.S36Lfs*22	ENST00000261769	NM_004360.3	35	GAg/g																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	96	763	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
MPL	0	MSKCC	GRCh37	1	43814632	43814632	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	93	855	0	ENST00000372470.3:c.1427C>A	p.Ser476Ter	p.S476*	ENST00000372470	NM_005373.2	476	tCg/tAg																																																																														
FH	0	MSKCC	GRCh37	1	241672019	241672020	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	116	748	0	ENST00000366560.3:c.621dup	p.Leu208ValfsTer9	p.L208Vfs*9	ENST00000366560	NM_000143.3	207	-/G																																																																														
SYK	0	MSKCC	GRCh37	9	93607715	93607715	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0022525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	37	354	1	ENST00000375746.1:c.418-1G>A		p.X140_splice	ENST00000375746	NM_001174167.1	140																																																																															
TERT	0	MSKCC	GRCh37	5	1295458	1295459	+	upstream_gene_variant	5'Flank	DEL	CG	CG	-			P-0022538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	23	13	0				ENST00000310581	NM_198253.2																																																																																
TSC1	0	MSKCC	GRCh37	9	135772850	135772850	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	259	635	0	ENST00000298552.3:c.2773G>T	p.Glu925Ter	p.E925*	ENST00000298552	NM_001162426.1	925	Gaa/Taa																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43724625	43724625	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	426	809	0	ENST00000382044.4:c.3442T>A	p.Leu1148Met	p.L1148M	ENST00000382044	NM_001141980.1	1148	Ttg/Atg																																																																														
VHL	0	MSKCC	GRCh37	3	10183712	10183713	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	482	828	0	ENST00000256474.2:c.181_182insG	p.Pro61ArgfsTer71	p.P61Rfs*71	ENST00000256474	NM_000551.3	61	ccc/cGcc																																																																														
BAP1	0	MSKCC	GRCh37	3	52437596	52437596	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	306	656	0	ENST00000460680.1:c.1565del	p.Pro522LeufsTer49	p.P522Lfs*49	ENST00000460680	NM_004656.3	522	cCt/ct																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138199822	138199822	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	266	414	0	ENST00000237289.4:c.1240A>C	p.Asn414His	p.N414H	ENST00000237289	NM_001270507.1	414	Aat/Cat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	149	647	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	308	916	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			541	154	998	4	ENST00000307102.5:c.371C>T	p.Pro124Leu	p.P124L	ENST00000307102	NM_002755.3	124	cCg/cTg																																																																														
PPP6C	0	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			200	148	547	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			571	120	776	1	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			337	151	708	1	ENST00000288602.6:c.1798_1799delGTinsAG	p.Val600Arg	p.V600R	ENST00000288602	NM_004333.4	600	GTg/AGg																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798597	45798597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			576	285	965	1	ENST00000372115.3:c.455C>T	p.Ser152Phe	p.S152F	ENST00000372115	NM_001048171.1	152	tCc/tTc																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871011	12871011	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	61	441	1	ENST00000228872.4:c.238G>T	p.Glu80Ter	p.E80*	ENST00000228872	NM_004064.3	80	Gag/Tag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18524125	18524125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			267	56	475	1	ENST00000266497.5:c.1637C>T	p.Pro546Leu	p.P546L	ENST00000266497		546	cCc/cTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444248	49444248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			624	172	1224	1	ENST00000301067.7:c.3123G>T	p.Gln1041His	p.Q1041H	ENST00000301067	NM_003482.3	1041	caG/caT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445842	49445842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			766	248	1442	0	ENST00000301067.7:c.1624G>A	p.Ala542Thr	p.A542T	ENST00000301067	NM_003482.3	542	Gca/Aca																																																																														
TBX3	0	MSKCC	GRCh37	12	115110100	115110100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	147	1189	1	ENST00000257566.3:c.1778C>T	p.Ala593Val	p.A593V	ENST00000257566	NM_016569.3	593	gCc/gTc																																																																														
FLT1	0	MSKCC	GRCh37	13	29012392	29012392	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	186	864	0	ENST00000282397.4:c.479T>G	p.Val160Gly	p.V160G	ENST00000282397	NM_002019.4	160	gTt/gGt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224181	36224182	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	256	914	2	ENST00000222270.7:c.6731_6732delinsTT	p.Pro2244Leu	p.P2244L	ENST00000222270	NM_014727.1	2244	cCC/cTT																																																																														
MYCN	0	MSKCC	GRCh37	2	16085833	16085833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	99	584	1	ENST00000281043.3:c.1009C>T	p.Pro337Ser	p.P337S	ENST00000281043	NM_005378.4	337	Ccc/Tcc																																																																														
TMEM127	0	MSKCC	GRCh37	2	96919748	96919748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	197	705	0	ENST00000258439.3:c.515C>T	p.Thr172Ile	p.T172I	ENST00000258439	NM_001193304.2	172	aCc/aTc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807174	1807174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			447	307	958	0	ENST00000260795.2:c.1505C>T	p.Pro502Leu	p.P502L	ENST00000260795		502	cCt/cTt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920127	1920127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	277	961	1	ENST00000382891.5:c.1187C>T	p.Pro396Leu	p.P396L	ENST00000382891	NM_133335.3	396	cCc/cTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187541804	187541804	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			434	79	614	0	ENST00000441802.2:c.5936T>G	p.Phe1979Cys	p.F1979C	ENST00000441802	NM_005245.3	1979	tTt/tGt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509636	106509636	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	79	642	2	ENST00000359195.3:c.1630C>T	p.Arg544Ter	p.R544*	ENST00000359195	NM_002649.2	544	Cga/Tga																																																																														
FANCC	0	MSKCC	GRCh37	9	98011465	98011465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	212	879	0	ENST00000289081.3:c.109C>T	p.His37Tyr	p.H37Y	ENST00000289081	NM_000136.2	37	Cac/Tac																																																																														
TSC1	0	MSKCC	GRCh37	9	135772057	135772058	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	161	648	2	ENST00000298552.3:c.3059_3060delinsTT	p.Thr1020Ile	p.T1020I	ENST00000298552	NM_001162426.1	1020	aCC/aTT																																																																														
EGFL7	0	MSKCC	GRCh37	9	139565449	139565449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022542-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	204	708	0	ENST00000308874.7:c.619G>A	p.Val207Met	p.V207M	ENST00000308874		207	Gtg/Atg																																																																														
BAP1	0	MSKCC	GRCh37	3	52441252	52441252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	48	445	0	ENST00000460680.1:c.518A>G	p.Tyr173Cys	p.Y173C	ENST00000460680	NM_004656.3	173	tAt/tGt																																																																														
MED12	0	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	226	692	2	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	621	786	2	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg																																																																														
RB1	0	MSKCC	GRCh37	13	48951075	48951075	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	172	363	0	ENST00000267163.4:c.1237G>T	p.Glu413Ter	p.E413*	ENST00000267163	NM_000321.2	413	Gaa/Taa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	193	1036	0	ENST00000267101.3:c.310G>C	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ctg																																																																														
ATM	0	MSKCC	GRCh37	11	108203543	108203543	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	140	553	0	ENST00000278616.4:c.7843C>T	p.Gln2615Ter	p.Q2615*	ENST00000278616	NM_000051.3	2615	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092922	27093718	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTGAGAATTTTTTTCTCTTTTACAGGGATGGCAGCCAGCCCAGAGATGATGGGCCTTGGGGATGTAAAGTTAACTCCAGCCACCAAAATGAACAACAAGGCAGATGGGACACCCAAGACAGAATCCAAATCCAAGGTAGTGATTTTTGTCTTGACTCCTTTCAACTTTGTGTCCTATCTTTTTCAGTGATAGGAAGGAAAAAGAAAAGAGAGTGACAAGATCCCAGCCTTTTATGACACCGGACTAGATAGTCTCTGAAAAAGCTGCTGTTGCCTCCTCTTATCATGAAAGGTCCCAGAATAATAGCTCAGTGAGTTGGGTCTGGGTTGGTCTAAGGGATCCTGGTAAATAACATAATATTCTCACAGCTGTTTGTTATGGGGGAAATGCCAGACACTGCAGCATCAAACTCTCTGTACTGTTTGGCTGGTGCCCTCTGTGAAACCGTGCCTCCTATACTCAAGCATTGATAGATGGGGTGTGCCATGGGCAACTAGTTGCTCTTCTCTTCCTGAACCTTACTCATAGCAGCAGGAATGGTACCCTGTGTTCTGTAAAGAAGGAGATAAGGCAGATGAGGCTTGAGTCCTTGGCTTCCCTTAGGTTGGTCCTGGGTGTACTGTTAGGCTGTGCGGTAGTAAAGGGTCCTACTCAGCATTTGGGTCATTTGTAATATTTCTGTCCTTGGCCATACCTCACTTTCCCTATCTGTATACATAGGGAAAATAAAAATCATAGCTGTTAATTCCTGTGAGTCTTCACCTCTGGCTCCCAGCCCTTTTGACCACGTTCCTGT	CTTGAGAATTTTTTTCTCTTTTACAGGGATGGCAGCCAGCCCAGAGATGATGGGCCTTGGGGATGTAAAGTTAACTCCAGCCACCAAAATGAACAACAAGGCAGATGGGACACCCAAGACAGAATCCAAATCCAAGGTAGTGATTTTTGTCTTGACTCCTTTCAACTTTGTGTCCTATCTTTTTCAGTGATAGGAAGGAAAAAGAAAAGAGAGTGACAAGATCCCAGCCTTTTATGACACCGGACTAGATAGTCTCTGAAAAAGCTGCTGTTGCCTCCTCTTATCATGAAAGGTCCCAGAATAATAGCTCAGTGAGTTGGGTCTGGGTTGGTCTAAGGGATCCTGGTAAATAACATAATATTCTCACAGCTGTTTGTTATGGGGGAAATGCCAGACACTGCAGCATCAAACTCTCTGTACTGTTTGGCTGGTGCCCTCTGTGAAACCGTGCCTCCTATACTCAAGCATTGATAGATGGGGTGTGCCATGGGCAACTAGTTGCTCTTCTCTTCCTGAACCTTACTCATAGCAGCAGGAATGGTACCCTGTGTTCTGTAAAGAAGGAGATAAGGCAGATGAGGCTTGAGTCCTTGGCTTCCCTTAGGTTGGTCCTGGGTGTACTGTTAGGCTGTGCGGTAGTAAAGGGTCCTACTCAGCATTTGGGTCATTTGTAATATTTCTGTCCTTGGCCATACCTCACTTTCCCTATCTGTATACATAGGGAAAATAAAAATCATAGCTGTTAATTCCTGTGAGTCTTCACCTCTGGCTCCCAGCCCTTTTGACCACGTTCCTGT	-			P-0022558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	41	421	0	ENST00000324856.7:c.2879-22_2989-559del		p.X960_splice	ENST00000324856	NM_006015.4	960																																																																															
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	267	814	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	37	678	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	28	367	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
NRAS	0	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	104	745	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32168682	32168682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	21	808	1	ENST00000375023.3:c.4241C>T	p.Ala1414Val	p.A1414V	ENST00000375023	NM_004557.3	1414	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			820	245	1359	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098964	178098975	+	inframe_deletion	In_Frame_Del	DEL	ATCTTGCCTCCA	ATCTTGCCTCCA	-			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			363	81	511	0	ENST00000397062.3:c.70_81del	p.Trp24_Asp27del	p.W24_D27del	ENST00000397062	NM_006164.4	24	TGGAGGCAAGAT/-																																																																														
GNAS	0	MSKCC	GRCh37	20	57485766	57485766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			584	41	612	0	ENST00000371085.3:c.1067G>A	p.Arg356His	p.R356H	ENST00000371085	NM_000516.4	356	cGt/cAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426181	49426181	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			859	100	970	2	ENST00000301067.7:c.12307C>T	p.Gln4103Ter	p.Q4103*	ENST00000301067	NM_003482.3	4103	Cag/Tag																																																																														
CDC73	0	MSKCC	GRCh37	1	193181230	193181230	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	159	621	0	ENST00000367435.3:c.1066G>A	p.Gly356Arg	p.G356R	ENST00000367435	NM_024529.4	356	Gga/Aga																																																																														
RET	0	MSKCC	GRCh37	10	43600477	43600477	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			857	233	1187	1	ENST00000355710.3:c.703G>T	p.Glu235Ter	p.E235*	ENST00000355710	NM_020975.4	235	Gag/Tag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18446874	18446874	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	123	771	0	ENST00000266497.5:c.959A>C	p.His320Pro	p.H320P	ENST00000266497		320	cAt/cCt																																																																														
NF1	0	MSKCC	GRCh37	17	29556086	29556086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	80	406	1	ENST00000358273.4:c.2453C>A	p.Ser818Tyr	p.S818Y	ENST00000358273	NM_001042492.2	818	tCc/tAc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873027	134873027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	132	1040	0	ENST00000398015.3:c.1331G>T	p.Ser444Ile	p.S444I	ENST00000398015	NM_004441.4	444	aGt/aTt																																																																														
KDR	0	MSKCC	GRCh37	4	55968562	55968562	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			874	131	944	0	ENST00000263923.4:c.2101T>G	p.Phe701Val	p.F701V	ENST00000263923	NM_002253.2	701	Ttt/Gtt																																																																														
IRF4	0	MSKCC	GRCh37	6	407462	407462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			614	33	492	0	ENST00000380956.4:c.1220C>G	p.Pro407Arg	p.P407R	ENST00000380956	NM_001195286.1	407	cCt/cGt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971178	21971179	+	stop_gained	Nonsense_Mutation	DNP	CG	CG	AT			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	143	871	1	ENST00000361570.3:c.345_346delinsAT	p.Gly116Ter	p.G116*	ENST00000361570	NM_058195.3	115	ggCGga/ggATga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971178	21971179	+	stop_gained	Nonsense_Mutation	DNP	CG	CG	AT			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	143	871	1	ENST00000361570.3:c.345_346delinsAT	p.Gly116Ter	p.G116*	ENST00000361570	NM_058195.3	115	ggCGga/ggATga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971178	21971179	+	stop_gained	Nonsense_Mutation	DNP	CG	CG	AT			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			569	143	871	1	ENST00000361570.3:c.345_346delinsAT	p.Gly116Ter	p.G116*	ENST00000361570	NM_058195.3	115	ggCGga/ggATga																																																																														
PTCH1	0	MSKCC	GRCh37	9	98239846	98239846	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			906	123	1105	0	ENST00000331920.6:c.1486A>T	p.Asn496Tyr	p.N496Y	ENST00000331920	NM_000264.3	496	Aac/Tac																																																																														
AR	0	MSKCC	GRCh37	X	66765719	66765719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1614	211	2025	0	ENST00000374690.3:c.731C>G	p.Ser244Trp	p.S244W	ENST00000374690	NM_000044.3	244	tCg/tGg																																																																														
STAG2	0	MSKCC	GRCh37	X	123184144	123184144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022588-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			572	44	705	0	ENST00000218089.9:c.1002G>T	p.Trp334Cys	p.W334C	ENST00000218089	NM_001042749.1	334	tgG/tgT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	96	715	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PAX5	0	MSKCC	GRCh37	9	36840607	36840607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	172	914	0	ENST00000358127.4:c.1126G>A	p.Ala376Thr	p.A376T	ENST00000358127	NM_001280556.1	376	Gcc/Acc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	208	784	2	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
GATA3	0	MSKCC	GRCh37	10	8100550	8100550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34363744		P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	162	915	1	ENST00000346208.3:c.524C>T	p.Ser175Leu	p.S175L	ENST00000346208		175	tCg/tTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952054	178952054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	92	443	0	ENST00000263967.3:c.3109G>A	p.Glu1037Lys	p.E1037K	ENST00000263967	NM_006218.2	1037	Gag/Aag																																																																														
TET1	0	MSKCC	GRCh37	10	70332435	70332435	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	319	793	0	ENST00000373644.4:c.340C>T	p.Arg114Ter	p.R114*	ENST00000373644	NM_030625.2	114	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112174620	112174620	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	161	452	0	ENST00000257430.4:c.3329C>G	p.Ser1110Ter	p.S1110*	ENST00000257430	NM_000038.5	1110	tCa/tGa																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138198246	138198246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200840068		P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	50	448	2	ENST00000237289.4:c.839G>A	p.Arg280Gln	p.R280Q	ENST00000237289	NM_001270507.1	280	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7576858	7576875	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGAAATATTCTCCAT	GGGTGAAATATTCTCCAT	A			P-0022612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	175	779	0	ENST00000269305.4:c.971_988delinsT	p.Asp324ValfsTer7	p.D324Vfs*7	ENST00000269305	NM_001126112.2	324	gATGGAGAATATTTCACCCtt/gTtt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	58	494	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	49	756	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	28	700	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891162	101891162	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	35	428	0	ENST00000374994.4:c.123T>G	p.Cys41Trp	p.C41W	ENST00000374994	NM_004612.2	41	tgT/tgG																																																																														
MSH6	0	MSKCC	GRCh37	2	48010560	48010560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	18	642	1	ENST00000234420.5:c.188C>T	p.Ser63Phe	p.S63F	ENST00000234420	NM_000179.2	63	tCc/tTc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324896	31324896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	81	560	1	ENST00000412585.2:c.40T>C	p.Ser14Pro	p.S14P	ENST00000412585	NM_005514.6	14	Tcg/Ccg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	48	787	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	111	1068	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	93	747	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	93	747	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	93	747	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
KMT2C	0	MSKCC	GRCh37	7	152009026	152009026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	23	381	0	ENST00000262189.6:c.596del	p.Arg199HisfsTer7	p.R199Hfs*7	ENST00000262189	NM_170606.2	199	cGa/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	170	937	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	284	777	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
IL7R	0	MSKCC	GRCh37	5	35875645	35875645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201449880		P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	58	631	1	ENST00000303115.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000303115	NM_002185.3	278	Gat/Aat																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041554	14041554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	110	632	0	ENST00000311895.7:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000311895	NM_005236.2	701	Cgt/Tgt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680722	88680722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	157	875	0	ENST00000360948.2:c.535G>A	p.Glu179Lys	p.E179K	ENST00000360948	NM_001012338.2	179	Gag/Aag																																																																														
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	92	601	2				ENST00000310581	NM_198253.2																																																																																
PIK3C2G	0	MSKCC	GRCh37	12	18716366	18716366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	75	615	0	ENST00000266497.5:c.3713C>T	p.Ser1238Leu	p.S1238L	ENST00000266497		1238	tCa/tTa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443979	49443979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201623566		P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	152	917	0	ENST00000301067.7:c.3392C>T	p.Pro1131Leu	p.P1131L	ENST00000301067	NM_003482.3	1131	cCg/cTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16258592	16258592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	99	657	0	ENST00000375759.3:c.5857C>T	p.Pro1953Ser	p.P1953S	ENST00000375759	NM_015001.2	1953	Cct/Tct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443637	49443637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	148	755	2	ENST00000301067.7:c.3734C>T	p.Ser1245Phe	p.S1245F	ENST00000301067	NM_003482.3	1245	tCt/tTt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489525	56489525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	147	750	0	ENST00000267101.3:c.1990C>T	p.Leu664Phe	p.L664F	ENST00000267101	NM_001982.3	664	Ctc/Ttc																																																																														
FLT3	0	MSKCC	GRCh37	13	28622468	28622468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	57	804	0	ENST00000241453.7:c.1149G>A	p.Trp383Ter	p.W383*	ENST00000241453	NM_004119.2	383	tgG/tgA																																																																														
INSR	0	MSKCC	GRCh37	19	7166227	7166227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	146	833	1	ENST00000302850.5:c.1799C>T	p.Ser600Leu	p.S600L	ENST00000302850	NM_000208.2	600	tCg/tTg																																																																														
IDH1	0	MSKCC	GRCh37	2	209103942	209103942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	130	543	0	ENST00000345146.2:c.1007G>A	p.Trp336Ter	p.W336*	ENST00000345146	NM_005896.2	336	tGg/tAg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55151576	55151576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	87	777	0	ENST00000257290.5:c.2362G>A	p.Glu788Lys	p.E788K	ENST00000257290	NM_006206.4	788	Gaa/Aaa																																																																														
KDR	0	MSKCC	GRCh37	4	55981193	55981193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	50	570	0	ENST00000263923.4:c.506G>A	p.Arg169Lys	p.R169K	ENST00000263923	NM_002253.2	169	aGa/aAa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155686	56155686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201539021		P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	94	578	0	ENST00000399503.3:c.778C>T	p.Arg260Cys	p.R260C	ENST00000399503	NM_005921.1	260	Cgc/Tgc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87339185	87339185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022759-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	109	702	0	ENST00000277120.3:c.767C>T	p.Ser256Leu	p.S256L	ENST00000277120		256	tCa/tTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	45	922	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	45	696	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0022796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	40	908	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25466799	25466799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	8	1095	3	ENST00000264709.3:c.1904G>A	p.Arg635Gln	p.R635Q	ENST00000264709	NM_175629.2	635	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	162	1081	1	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71949125	71949125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	66	879	0	ENST00000298229.2:c.3592G>C	p.Glu1198Gln	p.E1198Q	ENST00000298229	NM_001567.3	1198	Gag/Cag																																																																														
KMT2A	0	MSKCC	GRCh37	11	118369196	118369196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	58	723	1	ENST00000534358.1:c.5914G>A	p.Asp1972Asn	p.D1972N	ENST00000534358	NM_005933.3	1972	Gat/Aat																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373923	118373923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	31	525	0	ENST00000534358.1:c.7316C>G	p.Thr2439Ser	p.T2439S	ENST00000534358	NM_005933.3	2439	aCt/aGt																																																																														
DICER1	0	MSKCC	GRCh37	14	95597878	95597878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	70	924	0	ENST00000343455.3:c.406G>C	p.Glu136Gln	p.E136Q	ENST00000343455	NM_177438.2	136	Gag/Cag																																																																														
CDK12	0	MSKCC	GRCh37	17	37686937	37686937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	87	813	0	ENST00000447079.4:c.3841C>G	p.Leu1281Val	p.L1281V	ENST00000447079	NM_015083.1	1281	Ctg/Gtg																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804398	46804398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	71	641	1	ENST00000290295.7:c.609C>A	p.Ser203Arg	p.S203R	ENST00000290295	NM_006361.5	203	agC/agA																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591966	48591966	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	29	565	0	ENST00000342988.3:c.1129G>T	p.Glu377Ter	p.E377*	ENST00000342988	NM_005359.5	377	Gag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600475	10600475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	92	946	1	ENST00000171111.5:c.1380G>T	p.Arg460Ser	p.R460S	ENST00000171111	NM_203500.1	460	agG/agT																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221474	36221474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1280	104	1181	1	ENST00000222270.7:c.5233G>T	p.Asp1745Tyr	p.D1745Y	ENST00000222270	NM_014727.1	1745	Gat/Tat																																																																														
TSC1	0	MSKCC	GRCh37	9	135786892	135786892	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	77	780	0	ENST00000298552.3:c.977del	p.Leu326HisfsTer5	p.L326Hfs*5	ENST00000298552	NM_001162426.1	326	cTa/ca																																																																														
ATRX	0	MSKCC	GRCh37	X	76939639	76939639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	74	536	0	ENST00000373344.5:c.1109A>G	p.Tyr370Cys	p.Y370C	ENST00000373344	NM_000489.3	370	tAt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	99	503	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TBX3	0	MSKCC	GRCh37	12	115118942	115118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022810-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	45	365	0	ENST00000257566.3:c.399T>A	p.Phe133Leu	p.F133L	ENST00000257566	NM_016569.3	133	ttT/ttA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	44	762	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	256	1089	2	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780956	9780956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	31	866	0	ENST00000377346.4:c.1678G>A	p.Asp560Asn	p.D560N	ENST00000377346	NM_005026.3	560	Gat/Aat																																																																														
JAK1	0	MSKCC	GRCh37	1	65349077	65349077	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	145	1013	3	ENST00000342505.4:c.88G>T	p.Glu30Ter	p.E30*	ENST00000342505	NM_002227.2	30	Gag/Tag																																																																														
KDM5A	0	MSKCC	GRCh37	12	401923	401923	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	31	476	0	ENST00000399788.2:c.4866+2T>C		p.X1622_splice	ENST00000399788	NM_001042603.1	1622																																																																															
GNA11	0	MSKCC	GRCh37	19	3119298	3119298	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	33	1215	0	ENST00000078429.4:c.830A>T	p.Asp277Val	p.D277V	ENST00000078429	NM_002067.2	277	gAc/gTc																																																																														
ROS1	0	MSKCC	GRCh37	6	117665339	117665339	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	60	841	1	ENST00000368508.3:c.4408C>G	p.Leu1470Val	p.L1470V	ENST00000368508	NM_002944.2	1470	Ctg/Gtg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151864293	151864293	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	93	1014	0	ENST00000262189.6:c.9688G>C	p.Asp3230His	p.D3230H	ENST00000262189	NM_170606.2	3230	Gat/Cat																																																																														
ABL1	0	MSKCC	GRCh37	9	133730334	133730334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	152	878	2	ENST00000318560.5:c.400C>T	p.Arg134Cys	p.R134C	ENST00000318560	NM_005157.4	134	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	71	504	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	119	969	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
TSHR	0	MSKCC	GRCh37	14	81610608	81610608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	74	571	0	ENST00000298171.2:c.2206G>A	p.Glu736Lys	p.E736K	ENST00000298171	NM_000369.2	736	Gaa/Aaa																																																																														
NF1	0	MSKCC	GRCh37	17	29528489	29528489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	106	678	0	ENST00000358273.4:c.1246C>T	p.Arg416Ter	p.R416*	ENST00000358273	NM_001042492.2	416	Cga/Tga																																																																														
ARID2	0	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	80	734	2	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
IGF1	0	MSKCC	GRCh37	12	102813307	102813307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	86	677	1	ENST00000307046.8:c.382G>A	p.Asp128Asn	p.D128N	ENST00000307046	NM_001111285.1	128	Gac/Aac																																																																														
TP63	8626	MSKCC	GRCh37	3	189584500	189584500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	34	523	3	ENST00000264731.3:c.796C>T	p.Arg266Ter	p.R266*	ENST00000264731	NM_003722.4	266	Cga/Tga																																																																														
RPTOR	0	MSKCC	GRCh37	17	78811795	78811795	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	83	639	0	ENST00000306801.3:c.1210C>T	p.Arg404Trp	p.R404W	ENST00000306801	NM_020761.2	404	Cgg/Tgg																																																																														
ATM	0	MSKCC	GRCh37	11	108205756	108205756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	70	613	0	ENST00000278616.4:c.8071C>T	p.Arg2691Cys	p.R2691C	ENST00000278616	NM_000051.3	2691	Cgc/Tgc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55153703	55153703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	94	754	0	ENST00000257290.5:c.2669C>T	p.Ser890Phe	p.S890F	ENST00000257290	NM_006206.4	890	tCc/tTc																																																																														
ESR1	0	MSKCC	GRCh37	6	152265323	152265323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	59	454	0	ENST00000206249.3:c.776G>A	p.Arg259Gln	p.R259Q	ENST00000206249	NM_000125.3	259	cGa/cAa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509849	106509849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	137	814	0	ENST00000359195.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000359195	NM_002649.2	615	Gaa/Aaa																																																																														
PREX2	0	MSKCC	GRCh37	8	69000044	69000044	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	89	765	0	ENST00000288368.4:c.2113G>A	p.Gly705Arg	p.G705R	ENST00000288368	NM_024870.2	705	Gga/Aga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106940	27106940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	70	634	1	ENST00000324856.7:c.6551C>T	p.Ala2184Val	p.A2184V	ENST00000324856	NM_006015.4	2184	gCc/gTc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937970	36937970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	83	994	0	ENST00000361632.4:c.866C>T	p.Ala289Val	p.A289V	ENST00000361632		289	gCc/gTc																																																																														
PARP1	0	MSKCC	GRCh37	1	226566857	226566857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	88	688	0	ENST00000366794.5:c.1731C>A	p.Asp577Glu	p.D577E	ENST00000366794	NM_001618.3	577	gaC/gaA																																																																														
PTEN	0	MSKCC	GRCh37	10	89720717	89720717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	24	148	1	ENST00000371953.3:c.868G>A	p.Val290Ile	p.V290I	ENST00000371953	NM_000314.4	290	Gta/Ata																																																																														
MRE11A	0	MSKCC	GRCh37	11	94194164	94194164	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	140	802	1	ENST00000323929.3:c.1264T>A	p.Ser422Thr	p.S422T	ENST00000323929	NM_005591.3	422	Tca/Aca																																																																														
TBX3	0	MSKCC	GRCh37	12	115112383	115112383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	71	572	0	ENST00000257566.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000257566	NM_016569.3	453	Gag/Aag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923459	9923459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	63	789	0	ENST00000330684.3:c.1828G>A	p.Gly610Ser	p.G610S	ENST00000330684	NM_001134407.1	610	Ggc/Agc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992171	72992171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	86	827	0	ENST00000268489.5:c.1874C>T	p.Ser625Phe	p.S625F	ENST00000268489	NM_006885.3	625	tCc/tTc																																																																														
TCF3	0	MSKCC	GRCh37	19	1619810	1619810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	111	913	0	ENST00000344749.5:c.1136C>T	p.Ser379Leu	p.S379L	ENST00000344749	NM_001136139.2	379	tCg/tTg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226908	2226908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	77	476	0	ENST00000398665.3:c.4388C>T	p.Ser1463Phe	p.S1463F	ENST00000398665	NM_032482.2	1463	tCc/tTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276875	15276875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	100	943	0	ENST00000263388.2:c.5390C>T	p.Ser1797Phe	p.S1797F	ENST00000263388	NM_000435.2	1797	tCc/tTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291056	15291056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	130	940	0	ENST00000263388.2:c.3154G>A	p.Glu1052Lys	p.E1052K	ENST00000263388	NM_000435.2	1052	Gag/Aag																																																																														
CCNE1	0	MSKCC	GRCh37	19	30313039	30313039	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	75	683	0	ENST00000262643.3:c.840+2T>G		p.X280_splice	ENST00000262643	NM_001238.2	280																																																																															
ALK	0	MSKCC	GRCh37	2	29419721	29419721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	64	599	0	ENST00000389048.3:c.4079G>A	p.Arg1360Gln	p.R1360Q	ENST00000389048	NM_004304.4	1360	cGg/cAg																																																																														
EPAS1	0	MSKCC	GRCh37	2	46609599	46609599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	122	989	1	ENST00000263734.3:c.2323C>T	p.His775Tyr	p.H775Y	ENST00000263734	NM_001430.4	775	Cat/Tat																																																																														
ACVR1	0	MSKCC	GRCh37	2	158637091	158637091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	98	761	0	ENST00000263640.3:c.89C>T	p.Pro30Leu	p.P30L	ENST00000263640	NM_001105.4	30	cCc/cTc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31381354	31381354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	115	688	1	ENST00000328111.2:c.1079C>T	p.Ser360Leu	p.S360L	ENST00000328111	NM_006892.3	360	tCg/tTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980865	40980865	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	85	708	0	ENST00000373198.4:c.1621A>G	p.Lys541Glu	p.K541E	ENST00000373198	NM_133170.3	541	Aaa/Gaa																																																																														
PPARG	0	MSKCC	GRCh37	3	12447519	12447519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	92	850	2	ENST00000287820.6:c.758C>T	p.Ser253Phe	p.S253F	ENST00000287820	NM_015869.4	253	tCc/tTc																																																																														
SETD2	0	MSKCC	GRCh37	3	47144868	47144868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	122	816	0	ENST00000409792.3:c.4885C>T	p.His1629Tyr	p.H1629Y	ENST00000409792	NM_014159.6	1629	Cac/Tac																																																																														
MST1R	0	MSKCC	GRCh37	3	49934214	49934214	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	85	970	2	ENST00000296474.3:c.2293C>T	p.Gln765Ter	p.Q765*	ENST00000296474	NM_002447.2	765	Cag/Tag																																																																														
CSF1R	0	MSKCC	GRCh37	5	149465980	149465980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	118	928	1	ENST00000286301.3:c.11G>A	p.Gly4Glu	p.G4E	ENST00000286301	NM_005211.3	4	gGa/gAa																																																																														
FLT4	0	MSKCC	GRCh37	5	180057251	180057251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	90	886	0	ENST00000261937.6:c.487C>T	p.Pro163Ser	p.P163S	ENST00000261937	NM_182925.4	163	Ccc/Tcc																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271294	26271295	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	68	704	2	ENST00000305910.3:c.318_319delinsAA	p.Asp107Asn	p.D107N	ENST00000305910	NM_003534.2	106	gaGGat/gaAAat																																																																														
EPHA7	0	MSKCC	GRCh37	6	93973602	93973602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	71	682	0	ENST00000369303.4:c.1774G>A	p.Gly592Ser	p.G592S	ENST00000369303	NM_004440.3	592	Ggc/Agc																																																																														
PRDM1	0	MSKCC	GRCh37	6	106555353	106555353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	68	525	1	ENST00000369096.4:c.2470G>A	p.Asp824Asn	p.D824N	ENST00000369096	NM_001198.3	824	Gat/Aat																																																																														
ARID1B	0	MSKCC	GRCh37	6	157521965	157521965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	92	636	0	ENST00000346085.5:c.4237G>A	p.Gly1413Ser	p.G1413S	ENST00000346085	NM_020732.3	1413	Ggc/Agc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249088	55249088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	96	835	1	ENST00000275493.2:c.2386G>A	p.Gly796Ser	p.G796S	ENST00000275493	NM_005228.3	796	Ggc/Agc																																																																														
PREX2	0	MSKCC	GRCh37	8	69058515	69058515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	101	958	1	ENST00000288368.4:c.4159C>T	p.His1387Tyr	p.H1387Y	ENST00000288368	NM_024870.2	1387	Cat/Tat																																																																														
PRDM14	0	MSKCC	GRCh37	8	70980602	70980602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	68	661	0	ENST00000276594.2:c.775G>A	p.Val259Met	p.V259M	ENST00000276594	NM_024504.3	259	Gtg/Atg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8492876	8492876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	87	697	0	ENST00000356435.5:c.2453C>T	p.Ser818Phe	p.S818F	ENST00000356435		818	tCc/tTc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209493	98209493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	94	819	0	ENST00000331920.6:c.4045C>T	p.Pro1349Ser	p.P1349S	ENST00000331920	NM_000264.3	1349	Cct/Tct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431013	49431013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	121	633	0	ENST00000301067.7:c.10126G>C	p.Val3376Leu	p.V3376L	ENST00000301067	NM_003482.3	3376	Gtg/Ctg																																																																														
SETD2	0	MSKCC	GRCh37	3	47098436	47098437	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	146	632	0	ENST00000409792.3:c.6837dup	p.Val2280CysfsTer89	p.V2280Cfs*89	ENST00000409792	NM_014159.6	2279	-/T																																																																														
BAP1	0	MSKCC	GRCh37	3	52437816	52437816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	182	714	0	ENST00000460680.1:c.1345G>C	p.Ala449Pro	p.A449P	ENST00000460680	NM_004656.3	449	Gct/Cct																																																																														
ESR1	0	MSKCC	GRCh37	6	152163902	152163925	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTCAAGAGAAGTATTCAAGGTA	TCTTCAAGAGAAGTATTCAAGGTA	-			P-0022840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	77	519	0	ENST00000206249.3:c.623_643+3del		p.X208_splice	ENST00000206249	NM_000125.3	208																																																																															
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			652	212	675	1	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
FGF19	0	MSKCC	GRCh37	11	69514254	69514254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	188	631	0	ENST00000294312.3:c.427G>T	p.Val143Phe	p.V143F	ENST00000294312	NM_005117.2	143	Gtc/Ttc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43724457	43724457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			848	108	813	0	ENST00000382044.4:c.3610G>C	p.Glu1204Gln	p.E1204Q	ENST00000382044	NM_001141980.1	1204	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7577551	7577556	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGC	CCATGC	AA			P-0022844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			674	175	680	5	ENST00000269305.4:c.725_730delinsTT	p.Cys242PhefsTer4	p.C242Ffs*4	ENST00000269305	NM_001126112.2	242	tGCATGGgc/tTTgc																																																																														
STK11	0	MSKCC	GRCh37	19	1207175	1207190	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCCAACGGGGAGGC	TCCCCAACGGGGAGGC	-			P-0022844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	180	725	0	ENST00000326873.7:c.263_278del	p.Ile88ThrfsTer3	p.I88Tfs*3	ENST00000326873	NM_000455.4	88	aTCCCCAACGGGGAGGCc/ac																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602487	10602487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			369	105	496	0	ENST00000171111.5:c.1091G>A	p.Gly364Asp	p.G364D	ENST00000171111	NM_203500.1	364	gGc/gAc																																																																														
CUL3	0	MSKCC	GRCh37	2	225376275	225376275	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	101	331	0	ENST00000264414.4:c.679G>T	p.Glu227Ter	p.E227*	ENST00000264414	NM_003590.4	227	Gaa/Taa																																																																														
ERG	0	MSKCC	GRCh37	21	39817444	39817444	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	171	500	0	ENST00000288319.7:c.119A>T	p.Asp40Val	p.D40V	ENST00000288319	NM_182918.3	40	gAc/gTc																																																																														
SETD2	0	MSKCC	GRCh37	3	47165814	47165822	+	inframe_deletion	In_Frame_Del	DEL	TGGAGGGTT	TGGAGGGTT	-			P-0022844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	143	483	0	ENST00000409792.3:c.304_312del	p.Asn102_Pro104del	p.N102_P104del	ENST00000409792	NM_014159.6	102	AACCCTCCA/-																																																																														
TET2	0	MSKCC	GRCh37	4	106196420	106196420	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	115	464	0	ENST00000380013.4:c.4753A>T	p.Thr1585Ser	p.T1585S	ENST00000380013	NM_001127208.2	1585	Act/Tct																																																																														
FAT1	0	MSKCC	GRCh37	4	187521307	187521307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	175	578	0	ENST00000441802.2:c.11848G>T	p.Val3950Leu	p.V3950L	ENST00000441802	NM_005245.3	3950	Gtg/Ttg																																																																														
SOX17	0	MSKCC	GRCh37	8	55370910	55370910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			799	138	713	1	ENST00000297316.4:c.212C>A	p.Pro71Gln	p.P71Q	ENST00000297316	NM_022454.3	71	cCg/cAg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401195	139401195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022844-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			585	179	667	0	ENST00000277541.6:c.3874C>T	p.His1292Tyr	p.H1292Y	ENST00000277541	NM_017617.3	1292	Cac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	51	1098	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	CA			P-0022883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	61	891	3	ENST00000256078.4:c.182_183delAAinsTG	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTG																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	238	621	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	74	715	1				ENST00000310581	NM_198253.2																																																																																
TSHR	0	MSKCC	GRCh37	14	81610104	81610104	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	282	597	0	ENST00000298171.2:c.1702A>G	p.Ile568Val	p.I568V	ENST00000298171	NM_000369.2	568	Atc/Gtc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061156	38061192	+	protein_altering_variant	In_Frame_Del	DEL	CCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGA	CCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGA	GCCGGCG			P-0022911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	40	754	3	ENST00000250448.2:c.797_833delinsCGCCGGC	p.Phe266_Gly278delinsSerProAla	p.F266_G278delinsSPA	ENST00000250448	NM_004496.3	266	tTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGc/tCGCCGGCc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822242	72822242	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	45	1223	0	ENST00000268489.5:c.9933del	p.Phe3311LeufsTer42	p.F3311Lfs*42	ENST00000268489	NM_006885.3	3311	ttT/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	380	840	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	105	501	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	106	427	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
BAP1	0	MSKCC	GRCh37	3	52440373	52440373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	159	691	0	ENST00000460680.1:c.679N>T	p.Arg227Cys	p.R227C	ENST00000460680	NM_004656.3	227	Cgc/Tgc																																																																														
U2AF1	0	MSKCC	GRCh37	21	44513309	44513309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	91	1006	0	ENST00000291552.4:c.626G>A	p.Arg209His	p.R209H	ENST00000291552	NM_006758.2	209	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	113	484	1	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																																																														
NF1	0	MSKCC	GRCh37	17	29679418	29679418	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	130	540	0	ENST00000358273.4:c.7601C>G	p.Thr2534Ser	p.T2534S	ENST00000358273	NM_001042492.2	2534	aCt/aGt																																																																														
SESN2	0	MSKCC	GRCh37	1	28598227	28598227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	259	1047	1	ENST00000253063.3:c.199C>A	p.Leu67Met	p.L67M	ENST00000253063	NM_031459.4	67	Ctg/Atg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67358699	67358699	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	221	481	0	ENST00000327367.4:c.206+1G>A		p.X69_splice	ENST00000327367	NM_005902.3	69																																																																															
SMAD2	0	MSKCC	GRCh37	18	45374908	45374908	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	409	825	0	ENST00000262160.6:c.935G>C	p.Cys312Ser	p.C312S	ENST00000262160	NM_005901.5	312	tGc/tCc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942771	44942773	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0022921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	472	463	0	ENST00000377967.4:c.3354_3356del	p.Leu1119del	p.L1119del	ENST00000377967	NM_021140.2	1117	aaTCTt/aat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0022931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	401	604	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577064	7577064	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	205	789	1	ENST00000269305.4:c.874A>T	p.Lys292Ter	p.K292*	ENST00000269305	NM_001126112.2	292	Aaa/Taa																																																																														
MYCL1	0	MSKCC	GRCh37	1	40366921	40366921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	47	687	0	ENST00000397332.2:c.276G>T	p.Glu92Asp	p.E92D	ENST00000397332	NM_001033082.2	92	gaG/gaT																																																																														
ACVR1	0	MSKCC	GRCh37	2	158626939	158626939	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	51	634	2	ENST00000263640.3:c.731C>A	p.Ser244Ter	p.S244*	ENST00000263640	NM_001105.4	244	tCa/tAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	395	798	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	257	421	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164602	36164617	+	frameshift_variant	Frame_Shift_Del	DEL	GCGAGCGCTCGCCGCC	GCGAGCGCTCGCCGCC	CT			P-0022967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	855	608	3	ENST00000300305.3:c.1258_1273delinsAG	p.Gly420SerfsTer175	p.G420Sfs*175	ENST00000300305		420	GGCGGCGAGCGCTCGCcg/AGcg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71027121	71027121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	211	537	0	ENST00000318789.4:c.1206C>G	p.Ser402Arg	p.S402R	ENST00000318789	NM_032682.5	402	agC/agG																																																																														
TERT	0	MSKCC	GRCh37	5	1282583	1282583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	98	678	1	ENST00000310581.5:c.1730G>A	p.Arg577Gln	p.R577Q	ENST00000310581	NM_198253.2	577	cGg/cAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151851369	151851369	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	205	557	0	ENST00000262189.6:c.12122delC	p.Pro4041LeufsTer42	p.P4041Lfs*42	ENST00000262189	NM_170606.2	4041	cCt/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	35	757	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	34	692	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0022971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	19	504	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	35	474	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																																																														
MGA	0	MSKCC	GRCh37	15	41988357	41988357	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	23	682	0	ENST00000219905.7:c.1150del	p.Glu384AsnfsTer3	p.E384Nfs*3	ENST00000219905	NM_001164273.1	383	gaG/ga																																																																														
PALB2	0	MSKCC	GRCh37	16	23641610	23641610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	43	710	0	ENST00000261584.4:c.1865T>C	p.Leu622Pro	p.L622P	ENST00000261584	NM_024675.3	622	cTt/cCt																																																																														
RARA	0	MSKCC	GRCh37	17	38512411	38512411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	31	797	3	ENST00000254066.5:c.1322C>T	p.Pro441Leu	p.P441L	ENST00000254066	NM_000964.3	441	cCa/cTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0022974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	58	421	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56167804	56167805	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0022974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	77	569	0	ENST00000399503.3:c.1370_1371delCA	p.Thr457SerfsTer3	p.T457Sfs*3	ENST00000399503	NM_005921.1	457	ACa/a																																																																														
PTEN	0	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0022974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	45	283	0	ENST00000371953.3:c.802-2A>G		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
MAP3K1	0	MSKCC	GRCh37	5	56176991	56177009	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTTGGCCGCCTTTGTCT	TTCTTGGCCGCCTTTGTCT	-			P-0022974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	69	529	0	ENST00000399503.3:c.2262_2280del	p.Leu755Ter	p.L755*	ENST00000399503	NM_005921.1	754	cTTCTTGGCCGCCTTTGTCTt/ct																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	489	769	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	205	888	1	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																														
FGFR4	0	MSKCC	GRCh37	5	176519704	176519704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143108014		P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	211	838	1	ENST00000292408.4:c.976G>A	p.Glu326Lys	p.E326K	ENST00000292408	NM_213647.1	326	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023405	27023405	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	252	636	0	ENST00000324856.7:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000324856	NM_006015.4	171	Caa/Taa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444127	49444127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	487	870	1	ENST00000301067.7:c.3244G>T	p.Glu1082Ter	p.E1082*	ENST00000301067	NM_003482.3	1082	Gaa/Taa																																																																														
TSHR	0	MSKCC	GRCh37	14	81609982	81609982	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	88	373	0	ENST00000298171.2:c.1580T>A	p.Met527Lys	p.M527K	ENST00000298171	NM_000369.2	527	aTg/aAg																																																																														
SLX4	0	MSKCC	GRCh37	16	3639233	3639233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	270	956	0	ENST00000294008.3:c.4406C>T	p.Ser1469Phe	p.S1469F	ENST00000294008	NM_032444.2	1469	tCc/tTc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499367	89499368	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	752	520	2	ENST00000336596.2:c.2537_2538delinsAA	p.Pro846Gln	p.P846Q	ENST00000336596	NM_005233.5	846	cCC/cAA																																																																														
KMT2C	0	MSKCC	GRCh37	7	151947020	151947021	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	15	692	2	ENST00000262189.6:c.1753_1754delinsAC	p.Glu585Thr	p.E585T	ENST00000262189	NM_170606.2	585	GAa/ACa																																																																														
PREX2	0	MSKCC	GRCh37	8	69050700	69050701	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0022984-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	128	767	2	ENST00000288368.4:c.4035_4036delinsTT	p.Leu1345_Glu1346delinsPheTer	p.L1345_E1346delinsF*	ENST00000288368	NM_024870.2	1345	ttGGaa/ttTTaa																																																																														
WT1	0	MSKCC	GRCh37	11	32413565	32413565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	14	574	0	ENST00000332351.3:c.1385G>A	p.Arg462Gln	p.R462Q	ENST00000332351	NM_024426.4	462	cGg/cAg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10273974	10273974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	81	1013	2	ENST00000330684.3:c.295G>A	p.Val99Met	p.V99M	ENST00000330684	NM_001134407.1	99	Gtg/Atg																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519721	137519721	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	114	365	0	ENST00000367739.4:c.917C>G	p.Ser306Ter	p.S306*	ENST00000367739	NM_000416.2	306	tCa/tGa																																																																														
DROSHA	0	MSKCC	GRCh37	5	31431733	31431733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	235	649	0	ENST00000344624.3:c.3095G>C	p.Arg1032Thr	p.R1032T	ENST00000344624		1032	aGa/aCa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106612	27106612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	271	709	0	ENST00000324856.7:c.6223C>G	p.Pro2075Ala	p.P2075A	ENST00000324856	NM_006015.4	2075	Cca/Gca																																																																														
EP300	0	MSKCC	GRCh37	22	41568503	41568503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	202	485	0	ENST00000263253.7:c.4453G>A	p.Asp1485Asn	p.D1485N	ENST00000263253	NM_001429.3	1485	Gat/Aat																																																																														
MST1	0	MSKCC	GRCh37	3	49724666	49724666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	235	506	1	ENST00000449682.2:c.523G>T	p.Asp175Tyr	p.D175Y	ENST00000449682	NM_020998.3	175	Gat/Tat																																																																														
ATR	0	MSKCC	GRCh37	3	142188354	142188354	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	666	641	0	ENST00000350721.4:c.6377T>G	p.Ile2126Ser	p.I2126S	ENST00000350721	NM_001184.3	2126	aTc/aGc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87317089	87317089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	106	527	0	ENST00000277120.3:c.228G>C	p.Gln76His	p.Q76H	ENST00000277120		76	caG/caC																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106812	27106815	+	frameshift_variant	Frame_Shift_Del	DEL	CAGC	CAGC	AGT			P-0023015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	274	680	1	ENST00000324856.7:c.6423_6426delinsAGT	p.Phe2141LeufsTer59	p.F2141Lfs*59	ENST00000324856	NM_006015.4	2141	ttCAGC/ttAGT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	17	676	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7576864	7576865	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	AA	AA	C			P-0023021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	47	834	0	ENST00000269305.4:c.981_982delinsG	p.Tyr327Ter	p.Y327*	ENST00000269305	NM_001126112.2	327	taTTtc/taGtc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	115	460	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	246	1245	2	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	170	796	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25462012	25462012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	155	730	0	ENST00000264709.3:c.2395C>T	p.Pro799Ser	p.P799S	ENST00000264709	NM_175629.2	799	Ccc/Tcc																																																																														
BCOR	0	MSKCC	GRCh37	X	39932558	39932558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	227	1155	2	ENST00000378444.4:c.2041C>T	p.Pro681Ser	p.P681S	ENST00000378444	NM_001123385.1	681	Cct/Tct																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	23	389	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589594	67589596	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0023061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	79	349	1	ENST00000274335.5:c.1358_1360del	p.Asn453del	p.N453del	ENST00000274335		453	AAC/-																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101300	27101300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	124	924	0	ENST00000324856.7:c.4582C>T	p.Arg1528Ter	p.R1528*	ENST00000324856	NM_006015.4	1528	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67662446	67662447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	72	1025	1	ENST00000264010.4:c.1693dup	p.Thr565AsnfsTer11	p.T565Nfs*11	ENST00000264010	NM_006565.3	564	-/A																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	81	567	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	185	444	1	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
SLX4	0	MSKCC	GRCh37	16	3640428	3640428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	105	798	0	ENST00000294008.3:c.3211C>T	p.Pro1071Ser	p.P1071S	ENST00000294008	NM_032444.2	1071	Cca/Tca																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249463	153249463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	233	510	0	ENST00000281708.4:c.1315A>G	p.Thr439Ala	p.T439A	ENST00000281708	NM_033632.3	439	Aca/Gca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107191	27107191	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	249	522	0	ENST00000324856.7:c.6803del	p.Asn2268ThrfsTer14	p.N2268Tfs*14	ENST00000324856	NM_006015.4	2268	Aac/ac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828047	72828048	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	144	835	0	ENST00000268489.5:c.8533dup	p.Thr2845AsnfsTer11	p.T2845Nfs*11	ENST00000268489	NM_006885.3	2845	acc/aAcc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153268225	153268225	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0023071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	69	122	0	ENST00000281708.4:c.585-2A>G		p.X195_splice	ENST00000281708	NM_033632.3	195																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67591232	67591253	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAAAACTGTTTTTCAGGTGGTT	CAAAACTGTTTTTCAGGTGGTT	GAA			P-0023071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	70	342	1	ENST00000274335.5:c.1746-16_1751delinsGAA		p.X582_splice	ENST00000274335		582																																																																															
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0023091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	985	920	3	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	186	680	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	186	693	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																																																														
CDK12	0	MSKCC	GRCh37	17	37681095	37681095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5699	302	569	1	ENST00000447079.4:c.3264G>T	p.Gln1088His	p.Q1088H	ENST00000447079	NM_015083.1	1088	caG/caT																																																																														
RASA1	0	MSKCC	GRCh37	5	86629094	86629094	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	145	400	0	ENST00000274376.6:c.839A>G	p.Asp280Gly	p.D280G	ENST00000274376	NM_002890.2	280	gAt/gGt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591106	67591109	+	missense_variant	Missense_Mutation	ONP	AAAC	AAAC	GAAG			P-0023091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	217	408	0	ENST00000274335.5:c.1699_1702delinsGAAG	p.Lys567_Pro568delinsGluAla	p.K567_P568delinsEA	ENST00000274335		567	AAACca/GAAGca																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041923	14041923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	32	380	0	ENST00000311895.7:c.2470G>A	p.Asp824Asn	p.D824N	ENST00000311895	NM_005236.2	824	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	110	771	0	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902419	1902420	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	170	778	0	ENST00000382891.5:c.40_41del	p.Ser14CysfsTer42	p.S14Cfs*42	ENST00000382891	NM_133335.3	13	cAG/c																																																																														
EGFR	0	MSKCC	GRCh37	7	55259515	55259516	+	missense_variant	Missense_Mutation	DNP	TG	TG	GT			P-0023102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	2465	723	0	ENST00000275493.2:c.2573_2574delinsGT	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTG/cGT																																																																														
APC	0	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	77	695	1	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	160	849	0	ENST00000269305.4:c.700T>G	p.Tyr234Asp	p.Y234D	ENST00000269305	NM_001126112.2	234	Tac/Gac																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	238	681	1	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
APC	0	MSKCC	GRCh37	5	112175944	112175945	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	35	385	0	ENST00000257430.4:c.4655_4656del	p.Glu1552GlyfsTer6	p.E1552Gfs*6	ENST00000257430	NM_000038.5	1551	aaAGag/aaag																																																																														
SHOC2	0	MSKCC	GRCh37	10	112769049	112769049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	241	738	0	ENST00000369452.4:c.1328G>A	p.Gly443Asp	p.G443D	ENST00000369452	NM_007373.3	443	gGt/gAt																																																																														
POLE	0	MSKCC	GRCh37	12	133215722	133215724	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	186	563	0	ENST00000320574.5:c.5539_5541del	p.Lys1847del	p.K1847del	ENST00000320574	NM_006231.2	1847	AAG/-																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210784	36210784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	324	1004	3	ENST00000222270.7:c.535C>T	p.Arg179Trp	p.R179W	ENST00000222270	NM_014727.1	179	Cgg/Tgg																																																																														
CARD11	0	MSKCC	GRCh37	7	2979543	2979543	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148083162		P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	175	682	1	ENST00000396946.4:c.704G>A	p.Arg235Gln	p.R235Q	ENST00000396946	NM_032415.4	235	cGg/cAg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87317094	87317094	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	89	648	0	ENST00000277120.3:c.233G>T	p.Arg78Met	p.R78M	ENST00000277120		78	aGg/aTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49437989	49437989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	184	755	0	ENST00000301067.7:c.5182G>A	p.Asp1728Asn	p.D1728N	ENST00000301067	NM_003482.3	1728	Gac/Aac																																																																														
FLT3	0	MSKCC	GRCh37	13	28597613	28597613	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0023129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	181	707	1	ENST00000241453.7:c.2292T>A	p.Asp764Glu	p.D764E	ENST00000241453	NM_004119.2	764	gaT/gaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577493	7577497	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCTGA	CCTGA	-			P-0023129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	182	760	1	ENST00000269305.4:c.782+2_782+6del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NOTCH3	0	MSKCC	GRCh37	19	15291852	15291852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	180	938	0	ENST00000263388.2:c.2914C>G	p.Leu972Val	p.L972V	ENST00000263388	NM_000435.2	972	Cta/Gta																																																																														
ALK	0	MSKCC	GRCh37	2	30143022	30143022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	217	864	1	ENST00000389048.3:c.504C>A	p.Phe168Leu	p.F168L	ENST00000389048	NM_004304.4	168	ttC/ttA																																																																														
TAP1	0	MSKCC	GRCh37	6	32821195	32821196	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAGGCCCCCAGCCAGAGCACGGCCCAGCGGCT			P-0023129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	174	777	0	ENST00000354258.4:c.367_398dup	p.Cys133Ter	p.C133*	ENST00000354258	NM_000593.5	133	tgc/tgAGCCGCTGGGCCGTGCTCTGGCTGGGGGCCTGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	102	853	1	ENST00000269305.4:c.716delA	p.Asn239ThrfsTer8	p.N239Tfs*8	ENST00000269305	NM_001126112.2	239	aAc/ac																																																																														
RBM10	0	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	112	491	0	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	114	385	0	ENST00000374690.3:c.2226G>C	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgC																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106492	27106492	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	141	880	0	ENST00000324856.7:c.6103G>T	p.Glu2035Ter	p.E2035*	ENST00000324856	NM_006015.4	2035	Gag/Tag																																																																														
RRAS2	0	MSKCC	GRCh37	11	14316389	14316389	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	129	870	2	ENST00000256196.4:c.216A>T	p.Gln72His	p.Q72H	ENST00000256196		72	caA/caT																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971088	21971089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	79	665	0	ENST00000304494.5:c.269dup	p.Leu91ProfsTer29	p.L91Pfs*29	ENST00000304494	NM_000077.4	90	ttc/ttTc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971088	21971089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	79	665	0	ENST00000304494.5:c.269dup	p.Leu91ProfsTer29	p.L91Pfs*29	ENST00000304494	NM_000077.4	90	ttc/ttTc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971088	21971089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	79	665	0	ENST00000304494.5:c.269dup	p.Leu91ProfsTer29	p.L91Pfs*29	ENST00000304494	NM_000077.4	90	ttc/ttTc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949160	44949161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	66	320	0	ENST00000377967.4:c.3723dup	p.Gly1242TrpfsTer9	p.G1242Wfs*9	ENST00000377967	NM_021140.2	1241	gtt/gTtt																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	52	559	1	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	161	791	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	72	491	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	161	416	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
MLH1	0	MSKCC	GRCh37	3	37055939	37055939	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	160	422	0	ENST00000231790.2:c.694G>T	p.Gly232Ter	p.G232*	ENST00000231790	NM_000249.3	232	Gga/Tga																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469128	25469128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	151	889	1	ENST00000264709.3:c.1330G>A	p.Glu444Lys	p.E444K	ENST00000264709	NM_175629.2	444	Gag/Aag																																																																														
NF1	0	MSKCC	GRCh37	17	29665144	29665144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	119	778	2	ENST00000358273.4:c.6806G>A	p.Arg2269His	p.R2269H	ENST00000358273	NM_001042492.2	2269	cGt/cAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	67	816	6	ENST00000378444.4:c.3621delA	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa																																																																														
JUN	0	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	137	1009	0	ENST00000371222.2:c.109_110delAG	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	93	609	1	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	221	554	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	38	584	2	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120471739	120471739	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138832326		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	95	633	0	ENST00000256646.2:c.3752G>A	p.Arg1251His	p.R1251H	ENST00000256646	NM_024408.3	1251	cGc/cAc																																																																														
YAP1	0	MSKCC	GRCh37	11	101981586	101981586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	55	351	0	ENST00000282441.5:c.7C>T	p.Pro3Ser	p.P3S	ENST00000282441	NM_001130145.2	3	Ccc/Tcc																																																																														
SDHB	0	MSKCC	GRCh37	1	17354304	17354306	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	44	670	0	ENST00000375499.3:c.478_480del	p.Lys160del	p.K160del	ENST00000375499	NM_003000.2	160	AAG/-																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445124	49445124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	168	985	0	ENST00000301067.7:c.2342C>T	p.Ala781Val	p.A781V	ENST00000301067	NM_003482.3	781	gCt/gTt																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885263	111885263	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	122	772	0	ENST00000341259.2:c.1151A>G	p.Asp384Gly	p.D384G	ENST00000341259	NM_005475.2	384	gAt/gGt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103506715	103506715	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	36	277	0	ENST00000355739.4:c.462del	p.Lys154AsnfsTer16	p.K154Nfs*16	ENST00000355739	NM_000123.3	153	gAa/ga																																																																														
DICER1	0	MSKCC	GRCh37	14	95563045	95563045	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	55	303	0	ENST00000343455.3:c.4212del	p.Asp1405ThrfsTer23	p.D1405Tfs*23	ENST00000343455	NM_177438.2	1404	aaA/aa																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729115	66729115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	115	820	2	ENST00000307102.5:c.323G>A	p.Arg108Gln	p.R108Q	ENST00000307102	NM_002755.3	108	cGg/cAg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15964756	15964756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	155	721	3	ENST00000268712.3:c.5840C>T	p.Ala1947Val	p.A1947V	ENST00000268712	NM_006311.3	1947	gCg/gTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211658	36211658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	93	644	0	ENST00000222270.7:c.1409G>A	p.Gly470Asp	p.G470D	ENST00000222270	NM_014727.1	470	gGc/gAc																																																																														
INHA	0	MSKCC	GRCh37	2	220440151	220440151	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs140659175		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	157	930	0	ENST00000243786.2:c.1004T>C	p.Met335Thr	p.M335T	ENST00000243786	NM_002191.3	335	aTg/aCg																																																																														
IRS1	0	MSKCC	GRCh37	2	227662289	227662289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	125	721	0	ENST00000305123.5:c.1166C>T	p.Pro389Leu	p.P389L	ENST00000305123	NM_005544.2	389	cCg/cTg																																																																														
SETD2	0	MSKCC	GRCh37	3	47125266	47125266	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	122	631	0	ENST00000409792.3:c.6004A>G	p.Thr2002Ala	p.T2002A	ENST00000409792	NM_014159.6	2002	Aca/Gca																																																																														
MITF	0	MSKCC	GRCh37	3	70005638	70005638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	106	669	0	ENST00000352241.4:c.970C>A	p.Arg324Ser	p.R324S	ENST00000352241	NM_198159.2	324	Cgc/Agc																																																																														
GATA2	0	MSKCC	GRCh37	3	128205035	128205035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	117	842	0	ENST00000341105.2:c.406G>T	p.Gly136Cys	p.G136C	ENST00000341105	NM_032638.4	136	Ggc/Tgc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138403485	138403485	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	37	635	0	ENST00000289153.2:c.2297T>C	p.Val766Ala	p.V766A	ENST00000289153	NM_006219.2	766	gTt/gCt																																																																														
TP63	0	MSKCC	GRCh37	3	189455575	189455575	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs147340040		P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	101	793	2	ENST00000264731.3:c.109C>T	p.Arg37Ter	p.R37*	ENST00000264731	NM_003722.4	37	Cga/Tga																																																																														
RICTOR	0	MSKCC	GRCh37	5	38953579	38953579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	57	496	0	ENST00000357387.3:c.2774C>T	p.Ala925Val	p.A925V	ENST00000357387	NM_152756.3	925	gCa/gTa																																																																														
RASA1	0	MSKCC	GRCh37	5	86564417	86564417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	46	636	0	ENST00000274376.6:c.149C>A	p.Pro50His	p.P50H	ENST00000274376	NM_002890.2	50	cCt/cAt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32187959	32187959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	155	938	0	ENST00000375023.3:c.1262A>G	p.Gln421Arg	p.Q421R	ENST00000375023	NM_004557.3	421	cAg/cGg																																																																														
PIM1	0	MSKCC	GRCh37	6	37138552	37138554	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	98	614	0	ENST00000373509.5:c.88_90del	p.Glu30del	p.E30del	ENST00000373509	NM_002648.3	29	aAGGag/aag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873690	151873690	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	87	658	0	ENST00000262189.6:c.8848C>G	p.His2950Asp	p.H2950D	ENST00000262189	NM_170606.2	2950	Cat/Gat																																																																														
ABL1	0	MSKCC	GRCh37	9	133738369	133738369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	39	601	0	ENST00000318560.5:c.769T>C	p.Tyr257His	p.Y257H	ENST00000318560	NM_005157.4	257	Tac/Cac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139440219	139440219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	26	120	0	ENST00000277541.6:c.20C>A	p.Pro7His	p.P7H	ENST00000277541	NM_017617.3	7	cCc/cAc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	130	599	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	0	MSKCC	GRCh37	1	27057988	27057988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	127	746	0	ENST00000324856.7:c.1696C>T	p.Gln566Ter	p.Q566*	ENST00000324856	NM_006015.4	566	Cag/Tag																																																																														
RB1	0	MSKCC	GRCh37	13	48941720	48941720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	57	545	0	ENST00000267163.4:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000267163	NM_000321.2	344	Cag/Tag																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	162	1014	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578551	7578558	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTACTGT	AGTACTGT	-			P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	272	990	0	ENST00000269305.4:c.376-4_379delACAGTACT		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
ERBB3	0	MSKCC	GRCh37	12	56482552	56482552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	118	702	0	ENST00000267101.3:c.1009G>C	p.Gly337Arg	p.G337R	ENST00000267101	NM_001982.3	337	Ggg/Cgg																																																																														
GREM1	0	MSKCC	GRCh37	15	33023204	33023204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	71	749	2	ENST00000300177.4:c.313G>A	p.Glu105Lys	p.E105K	ENST00000300177	NM_001191322.1	105	Gag/Aag																																																																														
ERCC2	0	MSKCC	GRCh37	19	45856356	45856356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	170	858	0	ENST00000391945.4:c.1816G>A	p.Glu606Lys	p.E606K	ENST00000391945	NM_000400.3	606	Gag/Aag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096412	178096412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	41	482	0	ENST00000397062.3:c.919C>A	p.His307Asn	p.H307N	ENST00000397062	NM_006164.4	307	Cat/Aat																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164633	36164635	+	frameshift_variant	Frame_Shift_Del	DEL	GTA	GTA	CT			P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	74	790	1	ENST00000300305.3:c.1240_1242delinsAG	p.Tyr414SerfsTer180	p.Y414Sfs*180	ENST00000300305		414	TAC/AG																																																																														
ROS1	0	MSKCC	GRCh37	6	117638416	117638416	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	63	529	0	ENST00000368508.3:c.6025A>G	p.Ile2009Val	p.I2009V	ENST00000368508	NM_002944.2	2009	Att/Gtt																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200335	138200335	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs190199205		P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	49	554	1	ENST00000237289.4:c.1753G>A	p.Asp585Asn	p.D585N	ENST00000237289	NM_001270507.1	585	Gac/Aac																																																																														
PMS2	0	MSKCC	GRCh37	7	6026886	6026886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	35	479	0	ENST00000265849.7:c.1510G>A	p.Glu504Lys	p.E504K	ENST00000265849	NM_000535.5	504	Gag/Aag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859445	151859445	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	46	650	0	ENST00000262189.6:c.11217G>C	p.Gln3739His	p.Q3739H	ENST00000262189	NM_170606.2	3739	caG/caC																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	174	687	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56189466	56189467	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	61	687	0	ENST00000399503.3:c.4502_4503del	p.Glu1501AlafsTer21	p.E1501Afs*21	ENST00000399503	NM_005921.1	1500	AGa/a																																																																														
RXRA	0	MSKCC	GRCh37	9	137309141	137309141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	178	944	3	ENST00000481739.1:c.748G>A	p.Val250Met	p.V250M	ENST00000481739	NM_002957.4	250	Gtg/Atg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112447	115112448	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTTTGTCCAGCCG			P-0023192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	441	794	0	ENST00000257566.3:c.1279_1292dup	p.Ser432GlyfsTer205	p.S432Gfs*205	ENST00000257566	NM_016569.3	431	gcg/gcCGGCTGGACAAAGCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0023195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	36	788	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
GNAS	0	MSKCC	GRCh37	20	57470685	57470685	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	40	419	0	ENST00000371085.3:c.158A>C	p.Lys53Thr	p.K53T	ENST00000371085	NM_000516.4	53	aAa/aCa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249457	153249457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	53	797	0	ENST00000281708.4:c.1321C>G	p.Arg441Gly	p.R441G	ENST00000281708	NM_033632.3	441	Cgg/Ggg																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0023207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	95	851	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TBX3	0	MSKCC	GRCh37	12	115120776	115120776	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	40	721	0	ENST00000257566.3:c.230C>G	p.Pro77Arg	p.P77R	ENST00000257566	NM_016569.3	77	cCg/cGg																																																																														
TBX3	0	MSKCC	GRCh37	12	115120808	115120839	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCATGATCGGCTTGGCCAGGGCGCCCGGCA	ATCCATGATCGGCTTGGCCAGGGCGCCCGGCA	-			P-0023226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	34	610	0	ENST00000257566.3:c.167_198del	p.Leu56ProfsTer44	p.L56Pfs*44	ENST00000257566	NM_016569.3	56	cTGCCGGGCGCCCTGGCCAAGCCGATCATGGAT/c																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252990	36252991	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACACCCCC			P-0023226-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	49	528	0	ENST00000300305.3:c.371_372insGGGGGTGT	p.Pro125GlyfsTer11	p.P125Gfs*11	ENST00000300305		124	gtt/gtGGGGGTGTt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43772110	43772110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	381	1023	1	ENST00000382044.4:c.605C>T	p.Ser202Leu	p.S202L	ENST00000382044	NM_001141980.1	202	tCa/tTa																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	248	690	12	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	88	848	2	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	263	590	2	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
PTEN	0	MSKCC	GRCh37	10	89624293	89624293	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	270	654	0	ENST00000371953.3:c.67T>G	p.Leu23Val	p.L23V	ENST00000371953	NM_000314.4	23	Tta/Gta																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	23	700	1	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	91	239	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	97	260	0	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	17	671	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	171	553	7	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																																																														
SPEN	0	MSKCC	GRCh37	1	16254749	16254749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	548	737	2	ENST00000375759.3:c.2014C>T	p.Arg672Ter	p.R672*	ENST00000375759	NM_015001.2	672	Cga/Tga																																																																														
MGA	0	MSKCC	GRCh37	15	42032388	42032388	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	185	551	0	ENST00000219905.7:c.4575delA	p.Lys1525AsnfsTer18	p.K1525Nfs*18	ENST00000219905	NM_001164273.1	1524	gcA/gc																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	196	586	1	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
ATM	0	MSKCC	GRCh37	11	108115594	108115594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	326	739	3	ENST00000278616.4:c.742C>T	p.Arg248Ter	p.R248*	ENST00000278616	NM_000051.3	248	Cga/Tga																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	299	751	3	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	185	470	1	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																																																														
FGF4	0	MSKCC	GRCh37	11	69588848	69588848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	199	721	0	ENST00000168712.1:c.388G>A	p.Gly130Ser	p.G130S	ENST00000168712	NM_002007.2	130	Ggc/Agc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857178	9857178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	163	569	2	ENST00000330684.3:c.4223C>T	p.Thr1408Met	p.T1408M	ENST00000330684	NM_001134407.1	1408	aCg/aTg																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45655272	45655272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	109	903	0	ENST00000407780.3:c.580C>T	p.Arg194Trp	p.R194W	ENST00000407780	NM_001283052.1	194	Cgg/Tgg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	280	773	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
FLT4	0	MSKCC	GRCh37	5	180055897	180055897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	165	694	0	ENST00000261937.6:c.1088C>T	p.Pro363Leu	p.P363L	ENST00000261937	NM_182925.4	363	cCg/cTg																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	240	940	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
TSC2	0	MSKCC	GRCh37	16	2103410	2103410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	188	913	1	ENST00000219476.3:c.293G>A	p.Arg98Gln	p.R98Q	ENST00000219476	NM_000548.3	98	cGg/cAg																																																																														
DAXX	0	MSKCC	GRCh37	6	33286540	33286540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	237	636	2	ENST00000374542.5:c.2203G>A	p.Val735Met	p.V735M	ENST00000374542	NM_001141970.1	735	Gtg/Atg																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	425	798	29	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427983	49427983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	64	741	0	ENST00000301067.7:c.10607G>A	p.Arg3536His	p.R3536H	ENST00000301067	NM_003482.3	3536	cGc/cAc																																																																														
TAP1	0	MSKCC	GRCh37	6	32816544	32816544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	349	907	4	ENST00000354258.4:c.1631G>A	p.Arg544His	p.R544H	ENST00000354258	NM_000593.5	544	cGc/cAc																																																																														
FLT4	0	MSKCC	GRCh37	5	180040015	180040015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	251	825	0	ENST00000261937.6:c.3427G>A	p.Ala1143Thr	p.A1143T	ENST00000261937	NM_182925.4	1143	Gcc/Acc																																																																														
SPEN	0	MSKCC	GRCh37	1	16203059	16203060	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	241	579	0	ENST00000375759.3:c.770_771del	p.Arg257ThrfsTer3	p.R257Tfs*3	ENST00000375759	NM_015001.2	256	cAG/c																																																																														
MUTYH	0	MSKCC	GRCh37	1	45799087	45799087	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	249	909	0	ENST00000372115.3:c.304C>T	p.Arg102Trp	p.R102W	ENST00000372115	NM_001048171.1	102	Cgg/Tgg																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439754	51439754	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs199638281		P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	145	454	0	ENST00000262662.1:c.319T>G	p.Leu107Val	p.L107V	ENST00000262662		107	Ttg/Gtg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118377048	118377048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	34	483	0	ENST00000534358.1:c.10441C>T	p.Pro3481Ser	p.P3481S	ENST00000534358	NM_005933.3	3481	Ccc/Tcc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856254	111856254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	51	149	0	ENST00000341259.2:c.305C>T	p.Ala102Val	p.A102V	ENST00000341259	NM_005475.2	102	gCg/gTg																																																																														
SETD8	0	MSKCC	GRCh37	12	123879808	123879808	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	195	583	0	ENST00000330479.4:c.509del	p.Ala171LeufsTer36	p.A171Lfs*36	ENST00000330479	NM_020382.3	168	cgA/cg																																																																														
CDK8	0	MSKCC	GRCh37	13	26970424	26970425	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	128	377	0	ENST00000381527.3:c.794_795del	p.Lys265ArgfsTer10	p.K265Rfs*10	ENST00000381527	NM_001260.1	265	AAa/a																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041668	14041668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	220	577	0	ENST00000311895.7:c.2215G>A	p.Gly739Ser	p.G739S	ENST00000311895	NM_005236.2	739	Ggc/Agc																																																																														
CTCF	0	MSKCC	GRCh37	16	67670715	67670715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	265	734	1	ENST00000264010.4:c.1960C>T	p.Arg654Ter	p.R654*	ENST00000264010	NM_006565.3	654	Cga/Tga																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830903	72830906	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	233	660	0	ENST00000268489.5:c.5675_5678del	p.Glu1892GlyfsTer21	p.E1892Gfs*21	ENST00000268489	NM_006885.3	1892	gAGAGg/gg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350165	89350166	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	269	973	0	ENST00000301030.4:c.2784_2785del	p.Ser929CysfsTer88	p.S929Cfs*88	ENST00000301030	NM_001256183.1	928	aaAAgt/aagt																																																																														
FLCN	0	MSKCC	GRCh37	17	17127273	17127273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	205	715	0	ENST00000285071.4:c.581G>A	p.Arg194Gln	p.R194Q	ENST00000285071	NM_144997.5	194	cGg/cAg																																																																														
FLCN	0	MSKCC	GRCh37	17	17129521	17129521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	263	785	5	ENST00000285071.4:c.365G>A	p.Arg122His	p.R122H	ENST00000285071	NM_144997.5	122	cGc/cAc																																																																														
ACVR1	0	MSKCC	GRCh37	2	158636999	158636999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	278	759	1	ENST00000263640.3:c.181G>A	p.Asp61Asn	p.D61N	ENST00000263640	NM_001105.4	61	Gat/Aat																																																																														
ERG	0	MSKCC	GRCh37	21	39755381	39755381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	276	809	1	ENST00000288319.7:c.1384C>A	p.Pro462Thr	p.P462T	ENST00000288319	NM_182918.3	462	Ccc/Acc																																																																														
MST1R	0	MSKCC	GRCh37	3	49928933	49928933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	285	835	1	ENST00000296474.3:c.3433G>T	p.Ala1145Ser	p.A1145S	ENST00000296474	NM_002447.2	1145	Gct/Tct																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911435	134911435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	231	704	0	ENST00000398015.3:c.1900T>C	p.Tyr634His	p.Y634H	ENST00000398015	NM_004441.4	634	Tac/Cac																																																																														
KIT	0	MSKCC	GRCh37	4	55594183	55594183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	156	555	0	ENST00000288135.5:c.1886C>G	p.Ala629Gly	p.A629G	ENST00000288135	NM_000222.2	629	gCc/gGc																																																																														
SDHA	0	MSKCC	GRCh37	5	224507	224507	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	20	239	0	ENST00000264932.6:c.183A>T	p.Glu61Asp	p.E61D	ENST00000264932	NM_004168.2	61	gaA/gaT																																																																														
AGO2	0	MSKCC	GRCh37	8	141567294	141567294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	203	646	5	ENST00000220592.5:c.920C>T	p.Thr307Met	p.T307M	ENST00000220592	NM_012154.3	307	aCg/aTg																																																																														
AGO2	0	MSKCC	GRCh37	8	141572717	141572717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	212	585	1	ENST00000220592.5:c.353C>T	p.Thr118Met	p.T118M	ENST00000220592	NM_012154.3	118	aCg/aTg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738726	145738726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	268	966	0	ENST00000428558.2:c.2338C>T	p.Arg780Trp	p.R780W	ENST00000428558	NM_004260.3	780	Cgg/Tgg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98231428	98231428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	203	611	1	ENST00000331920.6:c.1855G>A	p.Val619Ile	p.V619I	ENST00000331920	NM_000264.3	619	Gtc/Atc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399429	139399429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	211	810	0	ENST00000277541.6:c.4714G>A	p.Gly1572Ser	p.G1572S	ENST00000277541	NM_017617.3	1572	Ggc/Agc																																																																														
EGFL7	0	MSKCC	GRCh37	9	139566487	139566487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	254	832	3	ENST00000308874.7:c.746G>A	p.Arg249His	p.R249H	ENST00000308874		249	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	354	1119	0	ENST00000269305.4:c.388del	p.Leu130SerfsTer40	p.L130Sfs*40	ENST00000269305	NM_001126112.2	130	Ctc/tc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602329	10602329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	175	1074	0	ENST00000171111.5:c.1249G>A	p.Gly417Arg	p.G417R	ENST00000171111	NM_203500.1	417	Ggg/Agg																																																																														
POLE	0	MSKCC	GRCh37	12	133226049	133226049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	145	912	5	ENST00000320574.5:c.3848C>A	p.Ala1283Asp	p.A1283D	ENST00000320574	NM_006231.2	1283	gCc/gAc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350234	89350234	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	75	1101	2	ENST00000301030.4:c.2716C>T	p.Arg906Ter	p.R906*	ENST00000301030	NM_001256183.1	906	Cga/Tga																																																																														
CDK12	0	MSKCC	GRCh37	17	37627730	37627730	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	346	1169	0	ENST00000447079.4:c.1649del	p.Pro550LeufsTer60	p.P550Lfs*60	ENST00000447079	NM_015083.1	549	Ccc/cc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610264	10610264	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	129	985	2	ENST00000171111.5:c.446A>T	p.Glu149Val	p.E149V	ENST00000171111	NM_203500.1	149	gAg/gTg																																																																														
UPF1	0	MSKCC	GRCh37	19	18965421	18965421	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	108	540	2	ENST00000262803.5:c.1168G>T	p.Glu390Ter	p.E390*	ENST00000262803	NM_002911.3	390	Gag/Tag																																																																														
CUL3	0	MSKCC	GRCh37	2	225422454	225422456	+	inframe_deletion	In_Frame_Del	DEL	ATA	ATA	-			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	112	969	0	ENST00000264414.4:c.184_186del	p.Tyr62del	p.Y62del	ENST00000264414	NM_003590.4	62	TAT/-																																																																														
AURKA	0	MSKCC	GRCh37	20	54958055	54958055	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	89	484	0	ENST00000312783.6:c.552A>G	p.Ile184Met	p.I184M	ENST00000312783	NM_198436.1	184	atA/atG																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42843882	42843882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	88	838	1	ENST00000398585.3:c.1037C>A	p.Thr346Lys	p.T346K	ENST00000398585	NM_001135099.1	346	aCg/aAg																																																																														
ATR	0	MSKCC	GRCh37	3	142277511	142277511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	83	652	0	ENST00000350721.4:c.1840G>A	p.Ala614Thr	p.A614T	ENST00000350721	NM_001184.3	614	Gcc/Acc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950414	38950414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	124	759	0	ENST00000357387.3:c.3536G>A	p.Gly1179Glu	p.G1179E	ENST00000357387	NM_152756.3	1179	gGa/gAa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50459432	50459432	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	58	422	0	ENST00000331340.3:c.721A>G	p.Lys241Glu	p.K241E	ENST00000331340	NM_006060.4	241	Aaa/Gaa																																																																														
DUSP4	0	MSKCC	GRCh37	8	29207387	29207387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	79	648	0	ENST00000240100.2:c.409C>A	p.Arg137Ser	p.R137S	ENST00000240100	NM_001394.6	137	Cgc/Agc																																																																														
SOX17	0	MSKCC	GRCh37	8	55371820	55371820	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	17	138	0	ENST00000297316.4:c.510G>C	p.Glu170Asp	p.E170D	ENST00000297316	NM_022454.3	170	gaG/gaC																																																																														
KDM6A	0	MSKCC	GRCh37	X	44870205	44870205	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	47	470	0	ENST00000377967.4:c.385-1G>C		p.X129_splice	ENST00000377967	NM_021140.2	129																																																																															
CDKN2A	0	MSKCC	GRCh37	9	21971185	21971185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	289	662	0	ENST00000304494.5:c.173G>C	p.Arg58Pro	p.R58P	ENST00000304494	NM_000077.4	58	cGa/cCa																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971185	21971185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	289	662	0	ENST00000304494.5:c.173G>C	p.Arg58Pro	p.R58P	ENST00000304494	NM_000077.4	58	cGa/cCa																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971185	21971185	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AG			P-0023324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	275	662	0	ENST00000304494.5:c.173delinsCT	p.Arg58ProfsTer62	p.R58Pfs*62	ENST00000304494	NM_000077.4	58	cGa/cCTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12465	796	743	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	392	993	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
BRIP1	0	MSKCC	GRCh37	17	59885833	59885833	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	213	614	0	ENST00000259008.2:c.913A>T	p.Lys305Ter	p.K305*	ENST00000259008	NM_032043.2	305	Aaa/Taa																																																																														
INPP4B	0	MSKCC	GRCh37	4	143094907	143094907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	51	828	0	ENST00000262992.4:c.1237G>T	p.Val413Phe	p.V413F	ENST00000262992	NM_001101669.1	413	Gtt/Ttt																																																																														
TCEB1	0	MSKCC	GRCh37	8	74868215	74868215	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	100	309	0	ENST00000284811.8:c.79del	p.His27MetfsTer5	p.H27Mfs*5	ENST00000284811		27	Cat/at																																																																														
RBM10	0	MSKCC	GRCh37	X	47041164	47041165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	339	527	0	ENST00000329236.7:c.1358_1359insT	p.Pro454ThrfsTer7	p.P454Tfs*7	ENST00000329236	NM_001204466.1	453	tca/tcTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0023350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	31	523	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TBX3	0	MSKCC	GRCh37	12	115115441	115115443	+	inframe_deletion	In_Frame_Del	DEL	GTC	GTC	-			P-0023350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	78	875	0	ENST00000257566.3:c.883_885delGAC	p.Asp295del	p.D295del	ENST00000257566	NM_016569.3	295	GAC/-																																																																														
CDH1	0	MSKCC	GRCh37	16	68842331	68842331	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	35	717	0	ENST00000261769.5:c.392C>G	p.Ser131Cys	p.S131C	ENST00000261769	NM_004360.3	131	tCc/tGc																																																																														
CDH1	0	MSKCC	GRCh37	16	68842340	68842396	+	protein_altering_variant	In_Frame_Del	DEL	GAATCCAAGCAGAATTGCTCACATTTCCCAACTCCTCTCCTGGCCTCAGAAGACAGA	GAATCCAAGCAGAATTGCTCACATTTCCCAACTCCTCTCCTGGCCTCAGAAGACAGA	AAAGCCAGG			P-0023350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	52	1008	5	ENST00000261769.5:c.401_457delinsAAAGCCAGG	p.Gly134_Lys153delinsGluSerGlnGlu	p.G134_K153delinsESQE	ENST00000261769	NM_004360.3	134	gGAATCCAAGCAGAATTGCTCACATTTCCCAACTCCTCTCCTGGCCTCAGAAGACAGAag/gAAAGCCAGGag																																																																														
LATS1	0	MSKCC	GRCh37	6	150004984	150004984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	45	583	0	ENST00000253339.5:c.1241G>A	p.Arg414Lys	p.R414K	ENST00000253339		414	aGa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	81	833	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	41	573	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578401	7578401	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147002414		P-0023354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	122	828	0	ENST00000269305.4:c.529C>T	p.Pro177Ser	p.P177S	ENST00000269305	NM_001126112.2	177	Ccc/Tcc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593397	48593397	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	62	432	0	ENST00000342988.3:c.1148T>A	p.Ile383Lys	p.I383K	ENST00000342988	NM_005359.5	383	aTa/aAa																																																																														
TERT	0	MSKCC	GRCh37	5	1295211	1295211	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	35	453	1				ENST00000310581	NM_198253.2																																																																																
KDM6A	0	MSKCC	GRCh37	X	44929266	44929267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAACAATGTG			P-0023354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	89	912	0	ENST00000377967.4:c.2367_2376dup	p.Gly793Ter	p.G793*	ENST00000377967	NM_021140.2	789	aat/aaTAACAATGTGt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	100	313	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
FGF3	0	MSKCC	GRCh37	11	69625159	69625159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	104	744	3	ENST00000334134.2:c.634C>T	p.Arg212Trp	p.R212W	ENST00000334134	NM_005247.2	212	Cgg/Tgg																																																																														
FUBP1	0	MSKCC	GRCh37	1	78414854	78414854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	107	395	0	ENST00000370768.2:c.1912C>T	p.Pro638Ser	p.P638S	ENST00000370768	NM_003902.3	638	Cct/Tct																																																																														
CDH1	0	MSKCC	GRCh37	16	68849652	68849652	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	160	514	0	ENST00000261769.5:c.1555C>T	p.Gln519Ter	p.Q519*	ENST00000261769	NM_004360.3	519	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	91	594	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	147	669	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	82	347	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023423	27023423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	106	538	1	ENST00000324856.7:c.529C>T	p.Gln177Ter	p.Q177*	ENST00000324856	NM_006015.4	177	Caa/Taa																																																																														
MED12	0	MSKCC	GRCh37	X	70339326	70339334	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGAGAC	AGGTGAGAC	-			P-0023367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	105	458	0	ENST00000374080.3:c.204_204+8del		p.X68_splice	ENST00000374080		68																																																																															
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	352	959	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	448	624	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	159	521	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	543	760	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	239	559	1	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	424	1072	5	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																														
TP53	0	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	307	670	1	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc																																																																														
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	51	297	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716217	52716217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	282	634	0	ENST00000322088.6:c.661C>T	p.Arg221Trp	p.R221W	ENST00000322088	NM_014225.5	221	Cgg/Tgg																																																																														
GATA3	0	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	155	913	4	ENST00000346208.3:c.404delC	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																																																														
TSC2	0	MSKCC	GRCh37	16	2138319	2138319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	318	737	0	ENST00000219476.3:c.5252G>A	p.Arg1751His	p.R1751H	ENST00000219476	NM_000548.3	1751	cGc/cAc																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111907683	111907683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146318804		P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	259	501	0	ENST00000393256.3:c.457C>T	p.Arg153Trp	p.R153W	ENST00000393256	NM_006538.4	153	Cgg/Tgg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214591	5214591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	47	839	1	ENST00000357368.4:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000357368	NM_002850.3	1492	cGg/cAg																																																																														
AR	0	MSKCC	GRCh37	X	66931504	66931504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	105	416	0	ENST00000374690.3:c.2146G>A	p.Val716Met	p.V716M	ENST00000374690	NM_000044.3	716	Gtg/Atg																																																																														
MTOR	0	MSKCC	GRCh37	1	11217230	11217230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	309	680	0	ENST00000361445.4:c.4448G>A	p.Cys1483Tyr	p.C1483Y	ENST00000361445	NM_004958.3	1483	tGc/tAc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713738	30713738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	202	536	0	ENST00000359013.4:c.1138G>A	p.Ala380Thr	p.A380T	ENST00000359013	NM_001024847.2	380	Gcc/Acc																																																																														
NF1	0	MSKCC	GRCh37	17	29684342	29684342	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	58	800	0	ENST00000358273.4:c.7925A>G	p.Tyr2642Cys	p.Y2642C	ENST00000358273	NM_001042492.2	2642	tAc/tGc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10252757	10252757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	116	765	0	ENST00000340748.4:c.3208G>A	p.Glu1070Lys	p.E1070K	ENST00000340748		1070	Gag/Aag																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98270529	98270530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778175153		P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	59	403	2	ENST00000331920.6:c.114dup	p.Leu39AlafsTer51	p.L39Afs*51	ENST00000331920	NM_000264.3	38	-/G																																																																														
IGF1R	0	MSKCC	GRCh37	15	99465448	99465448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	265	600	0	ENST00000268035.6:c.2273C>T	p.Thr758Met	p.T758M	ENST00000268035	NM_000875.3	758	aCg/aTg																																																																														
TSC2	0	MSKCC	GRCh37	16	2138135	2138135	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201206500		P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	367	903	1	ENST00000219476.3:c.5155G>A	p.Ala1719Thr	p.A1719T	ENST00000219476	NM_000548.3	1719	Gca/Aca																																																																														
WT1	0	MSKCC	GRCh37	11	32421541	32421541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	332	791	0	ENST00000332351.3:c.1051G>A	p.Gly351Arg	p.G351R	ENST00000332351	NM_024426.4	351	Gga/Aga																																																																														
ACVR1	0	MSKCC	GRCh37	2	158622516	158622516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	180	688	2	ENST00000263640.3:c.983G>T	p.Gly328Val	p.G328V	ENST00000263640	NM_001105.4	328	gGg/gTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8492897	8492897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	281	656	0	ENST00000356435.5:c.2432G>A	p.Arg811His	p.R811H	ENST00000356435		811	cGc/cAc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	849	1049	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52725368	52725368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	268	640	0	ENST00000322088.6:c.1535G>A	p.Cys512Tyr	p.C512Y	ENST00000322088	NM_014225.5	512	tGt/tAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	113	1047	4	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	168	885	1	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
EZH1	0	MSKCC	GRCh37	17	40874872	40874874	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	241	991	0	ENST00000428826.2:c.426_428del	p.Glu142del	p.E142del	ENST00000428826		142	gaAGAt/gat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	388	1012	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
WT1	0	MSKCC	GRCh37	11	32456798	32456798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	329	712	1	ENST00000332351.3:c.94G>A	p.Gly32Arg	p.G32R	ENST00000332351	NM_024426.4	32	Gga/Aga																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	179	711	35	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																																																														
VEGFA	0	MSKCC	GRCh37	6	43746203	43746203	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114262569		P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	43	755	2	ENST00000523873.1:c.322C>T	p.Arg108Trp	p.R108W	ENST00000523873		108	Cgg/Tgg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060955	38060955	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	29	516	0	ENST00000250448.2:c.1034del	p.Gly345AlafsTer5	p.G345Afs*5	ENST00000250448	NM_004496.3	345	gGc/gc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	150	808	3	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602565	10602565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	312	820	0	ENST00000171111.5:c.1013C>T	p.Ser338Leu	p.S338L	ENST00000171111	NM_203500.1	338	tCg/tTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432738	49432738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	360	855	1	ENST00000301067.7:c.8401C>T	p.Arg2801Ter	p.R2801*	ENST00000301067	NM_003482.3	2801	Cga/Tga																																																																														
MTOR	0	MSKCC	GRCh37	1	11181406	11181406	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	54	939	0	ENST00000361445.4:c.6830A>G	p.His2277Arg	p.H2277R	ENST00000361445	NM_004958.3	2277	cAc/cGc																																																																														
MTOR	0	MSKCC	GRCh37	1	11182071	11182073	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	166	736	0	ENST00000361445.4:c.6773_6775del	p.Lys2258del	p.K2258del	ENST00000361445	NM_004958.3	2258	aAGAtc/atc																																																																														
SPEN	0	MSKCC	GRCh37	1	16255986	16255986	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	209	628	0	ENST00000375759.3:c.3251T>C	p.Leu1084Pro	p.L1084P	ENST00000375759	NM_015001.2	1084	cTa/cCa																																																																														
SPEN	0	MSKCC	GRCh37	1	16262695	16262696	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	29	564	0	ENST00000375759.3:c.9967_9968del	p.Thr3323SerfsTer24	p.T3323Sfs*24	ENST00000375759	NM_015001.2	3320	ctCAca/ctca																																																																														
RAD54L	0	MSKCC	GRCh37	1	46726435	46726435	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142433634		P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	198	569	0	ENST00000371975.4:c.514C>T	p.Arg172Cys	p.R172C	ENST00000371975	NM_003579.3	172	Cgc/Tgc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120471713	120471713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	239	561	1	ENST00000256646.2:c.3778C>T	p.Arg1260Cys	p.R1260C	ENST00000256646	NM_024408.3	1260	Cgt/Tgt																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195544	102195544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	167	677	1	ENST00000263464.3:c.304G>A	p.Val102Ile	p.V102I	ENST00000263464	NM_001165.4	102	Gtt/Att																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374498	118374498	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	173	514	0	ENST00000534358.1:c.7896delT	p.Phe2632LeufsTer9	p.F2632Lfs*9	ENST00000534358	NM_005933.3	2631	Ttt/tt																																																																														
ARID2	0	MSKCC	GRCh37	12	46230734	46230734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	119	473	1	ENST00000334344.6:c.983G>A	p.Arg328Lys	p.R328K	ENST00000334344	NM_152641.2	328	aGg/aAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425047	49425047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	386	918	0	ENST00000301067.7:c.13441G>A	p.Glu4481Lys	p.E4481K	ENST00000301067	NM_003482.3	4481	Gag/Aag																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871609	35871610	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	129	394	0	ENST00000216797.5:c.896_897del	p.Thr299ArgfsTer7	p.T299Rfs*7	ENST00000216797	NM_020529.2	299	aCA/a																																																																														
IDH2	0	MSKCC	GRCh37	15	90631620	90631620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	409	797	2	ENST00000330062.3:c.649G>A	p.Val217Met	p.V217M	ENST00000330062	NM_002168.2	217	Gtg/Atg																																																																														
SLX4	0	MSKCC	GRCh37	16	3658800	3658800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	112	836	0	ENST00000294008.3:c.166G>A	p.Ala56Thr	p.A56T	ENST00000294008	NM_032444.2	56	Gct/Act																																																																														
CTCF	0	MSKCC	GRCh37	16	67644818	67644818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	210	580	1	ENST00000264010.4:c.83G>A	p.Arg28His	p.R28H	ENST00000264010	NM_006565.3	28	cGc/cAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831525	72831526	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	590	751	0	ENST00000268489.5:c.5055_5056del	p.Ser1687CysfsTer86	p.S1687Cfs*86	ENST00000268489	NM_006885.3	1685	acTGag/acag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348338	89348338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	66	1185	0	ENST00000301030.4:c.4612G>A	p.Ala1538Thr	p.A1538T	ENST00000301030	NM_001256183.1	1538	Gca/Aca																																																																														
TP53	0	MSKCC	GRCh37	17	7577071	7577072	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	397	886	0	ENST00000269305.4:c.866_867del	p.Leu289ProfsTer16	p.L289Pfs*16	ENST00000269305	NM_001126112.2	289	cTC/c																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222049	2222049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	469	959	1	ENST00000398665.3:c.2881G>A	p.Glu961Lys	p.E961K	ENST00000398665	NM_032482.2	961	Gag/Aag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15300159	15300159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	390	964	2	ENST00000263388.2:c.1117G>A	p.Gly373Ser	p.G373S	ENST00000263388	NM_000435.2	373	Ggc/Agc																																																																														
BBC3	0	MSKCC	GRCh37	19	47731545	47731545	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	55	47	0	ENST00000449228.1:c.247del	p.Arg83AlafsTer146	p.R83Afs*146	ENST00000449228	NM_001127240.2	83	Cgc/gc																																																																														
ALK	0	MSKCC	GRCh37	2	29519794	29519794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	45	738	0	ENST00000389048.3:c.1777T>C	p.Trp593Arg	p.W593R	ENST00000389048	NM_004304.4	593	Tgg/Cgg																																																																														
MSH2	0	MSKCC	GRCh37	2	47657008	47657008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	130	487	0	ENST00000233146.2:c.1204C>T	p.Gln402Ter	p.Q402*	ENST00000233146	NM_000251.2	402	Caa/Taa																																																																														
MSH2	0	MSKCC	GRCh37	2	47702188	47702188	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	190	554	0	ENST00000233146.2:c.1784T>C	p.Leu595Pro	p.L595P	ENST00000233146	NM_000251.2	595	cTc/cCc																																																																														
MSH6	0	MSKCC	GRCh37	2	48026992	48026992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	99	479	0	ENST00000234420.5:c.1870G>A	p.Gly624Ser	p.G624S	ENST00000234420	NM_000179.2	624	Ggc/Agc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99203949	99203949	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	121	452	2	ENST00000074304.5:c.2812C>T	p.Arg938Ter	p.R938*	ENST00000074304	NM_001134224.1	938	Cga/Tga																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095665	178095666	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	22	662	0	ENST00000397062.3:c.1665dup	p.Gln556ThrfsTer15	p.Q556Tfs*15	ENST00000397062	NM_006164.4	555	-/A																																																																														
GNAS	0	MSKCC	GRCh37	20	57478756	57478757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	29	480	1	ENST00000371085.3:c.348dupC	p.Val117ArgfsTer23	p.V117Rfs*23	ENST00000371085	NM_000516.4	114	-/C																																																																														
MLH1	0	MSKCC	GRCh37	3	37050333	37050333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	157	574	1	ENST00000231790.2:c.482C>T	p.Thr161Met	p.T161M	ENST00000231790	NM_000249.3	161	aCg/aTg																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665081	138665081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	122	299	0	ENST00000330315.3:c.484C>T	p.Pro162Ser	p.P162S	ENST00000330315	NM_023067.3	162	Ccc/Tcc																																																																														
TP63	0	MSKCC	GRCh37	3	189607190	189607190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	53	928	1	ENST00000264731.3:c.1569G>T	p.Gln523His	p.Q523H	ENST00000264731	NM_003722.4	523	caG/caT																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133797	55133797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	35	636	0	ENST00000257290.5:c.1010T>C	p.Val337Ala	p.V337A	ENST00000257290	NM_006206.4	337	gTa/gCa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332934	153332934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	21	445	0	ENST00000281708.4:c.22G>A	p.Val8Met	p.V8M	ENST00000281708	NM_033632.3	8	Gtg/Atg																																																																														
TERT	0	MSKCC	GRCh37	5	1293848	1293848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	493	1070	3	ENST00000310581.5:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000310581	NM_198253.2	385	Cgc/Tgc																																																																														
IL7R	0	MSKCC	GRCh37	5	35871259	35871259	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs200233367		P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	158	541	0	ENST00000303115.3:c.481A>G	p.Lys161Glu	p.K161E	ENST00000303115	NM_002185.3	161	Aaa/Gaa																																																																														
FLT4	0	MSKCC	GRCh37	5	180057753	180057753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	137	684	0	ENST00000261937.6:c.202C>T	p.Pro68Ser	p.P68S	ENST00000261937	NM_182925.4	68	Cca/Tca																																																																														
TAP1	0	MSKCC	GRCh37	6	32814922	32814922	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	362	906	1	ENST00000354258.4:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000354258	NM_000593.5	715	Cga/Tga																																																																														
DAXX	0	MSKCC	GRCh37	6	33286573	33286573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	252	559	0	ENST00000374542.5:c.2170G>T	p.Val724Leu	p.V724L	ENST00000374542	NM_001141970.1	724	Gtg/Ttg																																																																														
SMO	0	MSKCC	GRCh37	7	128845572	128845572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	297	666	2	ENST00000249373.3:c.869G>A	p.Arg290His	p.R290H	ENST00000249373	NM_005631.4	290	cGc/cAc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38285509	38285509	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	346	878	0	ENST00000425967.3:c.644del	p.Pro215GlnfsTer8	p.P215Qfs*8	ENST00000425967	NM_001174067.1	215	cCa/ca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500885	8500885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	229	745	0	ENST00000356435.5:c.1997C>A	p.Pro666His	p.P666H	ENST00000356435		666	cCt/cAt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139405155	139405155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	127	950	2	ENST00000277541.6:c.2690C>T	p.Ala897Val	p.A897V	ENST00000277541	NM_017617.3	897	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	16	901	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156846308	156846308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	246	989	2	ENST00000524377.1:c.1753delC	p.Leu585CysfsTer73	p.L585Cfs*73	ENST00000524377	NM_002529.3	583	cgC/cg																																																																														
TP53	0	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	642	953	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2494693	2494693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	272	909	1	ENST00000355716.4:c.833G>T	p.Gly278Val	p.G278V	ENST00000355716	NM_003820.2	278	gGg/gTg																																																																														
SDHC	0	MSKCC	GRCh37	1	161326608	161326608	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	294	836	0	ENST00000367975.2:c.384del	p.Trp129GlyfsTer7	p.W129Gfs*7	ENST00000367975	NM_003001.3	128	aCc/ac																																																																														
PARP1	0	MSKCC	GRCh37	1	226553675	226553675	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	174	578	0	ENST00000366794.5:c.2485T>A	p.Tyr829Asn	p.Y829N	ENST00000366794	NM_001618.3	829	Tat/Aat																																																																														
ARID5B	0	MSKCC	GRCh37	10	63759948	63759948	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	82	368	0	ENST00000279873.7:c.601A>G	p.Ile201Val	p.I201V	ENST00000279873	NM_032199.2	201	Att/Gtt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118359457	118359457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	185	508	0	ENST00000534358.1:c.4461G>T	p.Arg1487Ser	p.R1487S	ENST00000534358	NM_005933.3	1487	agG/agT																																																																														
CBL	0	MSKCC	GRCh37	11	119169145	119169145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	119	724	1	ENST00000264033.4:c.2329C>A	p.Pro777Thr	p.P777T	ENST00000264033	NM_005188.3	777	Cca/Aca																																																																														
TBX3	0	MSKCC	GRCh37	12	115118824	115118824	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	549	719	0	ENST00000257566.3:c.517G>C	p.Ala173Pro	p.A173P	ENST00000257566	NM_016569.3	173	Gct/Cct																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680637	88680637	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	98	588	0	ENST00000360948.2:c.620G>A	p.Cys207Tyr	p.C207Y	ENST00000360948	NM_001012338.2	207	tGt/tAt																																																																														
STK11	0	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	249	747	0	ENST00000326873.7:c.465del		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
KEAP1	0	MSKCC	GRCh37	19	10610311	10610311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	369	1192	0	ENST00000171111.5:c.399G>T	p.Met133Ile	p.M133I	ENST00000171111	NM_203500.1	133	atG/atT																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264391	46264391	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	97	575	0	ENST00000371998.3:c.1438A>T	p.Ile480Phe	p.I480F	ENST00000371998		480	Atc/Ttc																																																																														
EP300	0	MSKCC	GRCh37	22	41527633	41527634	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	ATGAGTAAGTTTGTGTCATCCTAATAACATGGTATTGGTTGTGTCAGTAAATGACATCTA			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	89	535	0	ENST00000263253.7:c.1525_1528+56dup		p.-508MSKFVSS**HGIGCVSK*HL	ENST00000263253	NM_001429.3	508	-/ATGAGTAAGTTTGTGTCATCCTAATAACATGGTATTGGTTGTGTCAGTAAATGACATCTA																																																																														
EPHA3	0	MSKCC	GRCh37	3	89498496	89498496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	141	393	0	ENST00000336596.2:c.2468G>T	p.Arg823Ile	p.R823I	ENST00000336596	NM_005233.5	823	aGa/aTa																																																																														
FLT4	0	MSKCC	GRCh37	5	180046086	180046086	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	58	575	0	ENST00000261937.6:c.2785T>G	p.Phe929Val	p.F929V	ENST00000261937	NM_182925.4	929	Ttc/Gtc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945048	151945048	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	41	848	0	ENST00000262189.6:c.2471G>C	p.Gly824Ala	p.G824A	ENST00000262189	NM_170606.2	824	gGc/gCc																																																																														
ATRX	0	MSKCC	GRCh37	X	76953125	76953125	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0023438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	283	352	1	ENST00000373344.5:c.190-2A>T		p.X64_splice	ENST00000373344	NM_000489.3	64																																																																															
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	127	728	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	121	528	0	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	109	543	0	ENST00000342988.3:c.1610A>T	p.Asp537Val	p.D537V	ENST00000342988	NM_005359.5	537	gAc/gTc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	327	721	0	ENST00000256078.4:c.99T>A	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaA																																																																														
APC	0	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	226	406	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56437573	56437574	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	195	803	1	ENST00000407977.2:c.888dup	p.Asn297Ter	p.N297*	ENST00000407977		296	-/T																																																																														
ABL1	0	MSKCC	GRCh37	9	133760879	133760879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	205	984	0	ENST00000318560.5:c.3202G>A	p.Val1068Met	p.V1068M	ENST00000318560	NM_005157.4	1068	Gtg/Atg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251805	212251805	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	107	527	0	ENST00000342788.4:c.3254C>A	p.Thr1085Asn	p.T1085N	ENST00000342788	NM_005235.2	1085	aCt/aAt																																																																														
RICTOR	0	MSKCC	GRCh37	5	38981967	38981967	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0023448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	122	573	0	ENST00000357387.3:c.753+2T>C		p.X251_splice	ENST00000357387	NM_152756.3	251																																																																															
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	258	965	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ATRX	0	MSKCC	GRCh37	X	76939673	76939674	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	140	1111	1	ENST00000373344.5:c.1074dupA	p.Leu359ThrfsTer3	p.L359Tfs*3	ENST00000373344	NM_000489.3	358	-/A																																																																														
SETD2	0	MSKCC	GRCh37	3	47139519	47139519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	132	868	0	ENST00000409792.3:c.5068G>A	p.Gly1690Arg	p.G1690R	ENST00000409792	NM_014159.6	1690	Gga/Aga																																																																														
KMT2A	0	MSKCC	GRCh37	11	118369223	118369223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	70	587	0	ENST00000534358.1:c.5941C>T	p.Arg1981Trp	p.R1981W	ENST00000534358	NM_005933.3	1981	Cgg/Tgg																																																																														
FLT3	0	MSKCC	GRCh37	13	28609796	28609796	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	224	753	0	ENST00000241453.7:c.1433T>C	p.Ile478Thr	p.I478T	ENST00000241453	NM_004119.2	478	aTc/aCc																																																																														
RNF43	0	MSKCC	GRCh37	17	56435149	56435149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	265	825	0	ENST00000407977.2:c.1988C>T	p.Pro663Leu	p.P663L	ENST00000407977		663	cCc/cTc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198285196	198285196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	114	865	1	ENST00000335508.6:c.371G>T	p.Arg124Leu	p.R124L	ENST00000335508	NM_012433.2	124	cGg/cTg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643770	52643770	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	119	877	0	ENST00000394830.3:c.2126T>A	p.Ile709Asn	p.I709N	ENST00000394830	NM_018313.4	709	aTt/aAt																																																																														
LATS1	0	MSKCC	GRCh37	6	150001284	150001284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	103	903	0	ENST00000253339.5:c.2320G>T	p.Asp774Tyr	p.D774Y	ENST00000253339		774	Gat/Tat																																																																														
NTRK2	0	MSKCC	GRCh37	9	87636347	87636347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	112	791	0	ENST00000277120.3:c.2512G>T	p.Gly838Cys	p.G838C	ENST00000277120		838	Ggc/Tgc																																																																														
RBM10	0	MSKCC	GRCh37	X	47039372	47039372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023464-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	138	888	1	ENST00000329236.7:c.764G>T	p.Arg255Leu	p.R255L	ENST00000329236	NM_001204466.1	255	cGc/cTc																																																																														
XIAP	0	MSKCC	GRCh37	X	123034426	123034426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	55	669	0	ENST00000355640.3:c.1183G>A	p.Glu395Lys	p.E395K	ENST00000355640		395	Gaa/Aaa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934954	9934954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	30	484	0	ENST00000330684.3:c.1336A>G	p.Thr446Ala	p.T446A	ENST00000330684	NM_001134407.1	446	Acc/Gcc																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52724365	52724365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	52	566	0	ENST00000322088.6:c.1497G>A	p.Met499Ile	p.M499I	ENST00000322088	NM_014225.5	499	atG/atA																																																																														
FGFR1	0	MSKCC	GRCh37	8	38273515	38273515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	114	860	0	ENST00000425967.3:c.1820G>T	p.Arg607Leu	p.R607L	ENST00000425967	NM_001174067.1	607	cGg/cTg																																																																														
BRAF	0	MSKCC	GRCh37	7	140501249	140501249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	57	752	0	ENST00000288602.6:c.823G>A	p.Glu275Lys	p.E275K	ENST00000288602	NM_004333.4	275	Gaa/Aaa																																																																														
IKBKE	0	MSKCC	GRCh37	1	206646616	206646616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	125	960	0	ENST00000367120.3:c.46G>C	p.Gly16Arg	p.G16R	ENST00000367120	NM_014002.3	16	Ggg/Cgg																																																																														
MEN1	0	MSKCC	GRCh37	11	64575473	64575473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	135	804	1	ENST00000337652.1:c.559G>T	p.Ala187Ser	p.A187S	ENST00000337652	NM_130803.2	187	Gcc/Tcc																																																																														
PAK1	0	MSKCC	GRCh37	11	77085399	77085399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	49	573	2	ENST00000356341.3:c.451G>A	p.Glu151Lys	p.E151K	ENST00000356341	NM_002576.4	151	Gag/Aag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18656271	18656271	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	70	691	0	ENST00000266497.5:c.2950G>T	p.Gly984Ter	p.G984*	ENST00000266497		984	Gga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445116	49445116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	116	739	0	ENST00000301067.7:c.2350G>A	p.Glu784Lys	p.E784K	ENST00000301067	NM_003482.3	784	Gag/Aag																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885460	111885460	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	85	608	0	ENST00000341259.2:c.1237C>A	p.His413Asn	p.H413N	ENST00000341259	NM_005475.2	413	Cac/Aac																																																																														
HNF1A	0	MSKCC	GRCh37	12	121432200	121432200	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	92	716	0	ENST00000257555.6:c.947A>T	p.Lys316Met	p.K316M	ENST00000257555		316	aAg/aTg																																																																														
POLE	0	MSKCC	GRCh37	12	133237658	133237658	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	77	915	0	ENST00000320574.5:c.2957A>T	p.Gln986Leu	p.Q986L	ENST00000320574	NM_006231.2	986	cAa/cTa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103527780	103527780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	62	498	0	ENST00000355739.4:c.3088G>T	p.Ala1030Ser	p.A1030S	ENST00000355739	NM_000123.3	1030	Gca/Tca																																																																														
NTHL1	0	MSKCC	GRCh37	16	2094776	2094776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	67	861	0	ENST00000219066.1:c.404C>T	p.Ser135Leu	p.S135L	ENST00000219066	NM_002528.5	135	tCa/tTa																																																																														
CTCF	0	MSKCC	GRCh37	16	67662326	67662327	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	307	566	0	ENST00000264010.4:c.1573dup	p.Cys525LeufsTer6	p.C525Lfs*6	ENST00000264010	NM_006565.3	524	-/T																																																																														
STAT5B	0	MSKCC	GRCh37	17	40384139	40384139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	104	573	0	ENST00000293328.3:c.7G>T	p.Val3Leu	p.V3L	ENST00000293328	NM_012448.3	3	Gtg/Ttg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244453	41244453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	118	790	0	ENST00000357654.3:c.3095G>C	p.Arg1032Thr	p.R1032T	ENST00000357654	NM_007294.3	1032	aGa/aCa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214867	36214867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	91	924	0	ENST00000222270.7:c.3293G>T	p.Gly1098Val	p.G1098V	ENST00000222270	NM_014727.1	1098	gGg/gTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223235	36223235	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	222	1185	0	ENST00000222270.7:c.5785G>T	p.Ala1929Ser	p.A1929S	ENST00000222270	NM_014727.1	1929	Gcc/Tcc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212989623	212989623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	58	370	0	ENST00000342788.4:c.88G>T	p.Ala30Ser	p.A30S	ENST00000342788	NM_005235.2	30	Gca/Tca																																																																														
CUL3	0	MSKCC	GRCh37	2	225376116	225376116	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	149	900	0	ENST00000264414.4:c.838G>T	p.Glu280Ter	p.E280*	ENST00000264414	NM_003590.4	280	Gag/Tag																																																																														
CUL3	0	MSKCC	GRCh37	2	225449678	225449678	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	69	527	0	ENST00000264414.4:c.49C>G	p.Arg17Gly	p.R17G	ENST00000264414	NM_003590.4	17	Cgg/Ggg																																																																														
BAP1	0	MSKCC	GRCh37	3	52443586	52443586	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	121	566	0	ENST00000460680.1:c.106C>T	p.Gln36Ter	p.Q36*	ENST00000460680	NM_004656.3	36	Cag/Tag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499365	89499366	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	96	565	0	ENST00000336596.2:c.2535_2536delinsAA	p.Pro846Thr	p.P846T	ENST00000336596	NM_005233.5	845	ccCCcc/ccAAcc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138383941	138383941	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	132	705	0	ENST00000289153.2:c.2609T>C	p.Val870Ala	p.V870A	ENST00000289153	NM_006219.2	870	gTg/gCg																																																																														
TET2	0	MSKCC	GRCh37	4	106180817	106180817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	78	473	0	ENST00000380013.4:c.3845G>T	p.Gly1282Val	p.G1282V	ENST00000380013	NM_001127208.2	1282	gGt/gTt																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120525	94120525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	40	646	0	ENST00000369303.4:c.526C>A	p.Pro176Thr	p.P176T	ENST00000369303	NM_004440.3	176	Cct/Act																																																																														
ESR1	0	MSKCC	GRCh37	6	152201860	152201860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	80	619	0	ENST00000206249.3:c.714G>T	p.Gln238His	p.Q238H	ENST00000206249	NM_000125.3	238	caG/caT																																																																														
HGF	0	MSKCC	GRCh37	7	81346669	81346669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	46	385	0	ENST00000222390.5:c.1284G>T	p.Trp428Cys	p.W428C	ENST00000222390	NM_000601.4	428	tgG/tgT																																																																														
CDK6	0	MSKCC	GRCh37	7	92355085	92355085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	28	390	0	ENST00000265734.4:c.392G>A	p.Arg131Gln	p.R131Q	ENST00000265734	NM_001259.6	131	cGa/cAa																																																																														
SMO	0	MSKCC	GRCh37	7	128848667	128848667	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	134	774	2	ENST00000249373.3:c.1332G>T	p.Lys444Asn	p.K444N	ENST00000249373	NM_005631.4	444	aaG/aaT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484218	8484218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	126	760	1	ENST00000356435.5:c.3314C>A	p.Pro1105Gln	p.P1105Q	ENST00000356435		1105	cCa/cAa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87563491	87563491	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs201553907		P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	59	816	0	ENST00000277120.3:c.1879G>T	p.Asp627Tyr	p.D627Y	ENST00000277120		627	Gac/Tac																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209239	98209239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	64	843	0	ENST00000331920.6:c.4299G>T	p.Gln1433His	p.Q1433H	ENST00000331920	NM_000264.3	1433	caG/caT																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390623	139390623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	69	979	2	ENST00000277541.6:c.7568C>T	p.Ser2523Leu	p.S2523L	ENST00000277541	NM_017617.3	2523	tCg/tTg																																																																														
BTK	0	MSKCC	GRCh37	X	100612539	100612539	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	42	739	1	ENST00000308731.7:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000308731	NM_000061.2	379	Caa/Taa																																																																														
GLI1	0	MSKCC	GRCh37	12	57864214	57864214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	33	639	0	ENST00000228682.2:c.1691C>T	p.Pro564Leu	p.P564L	ENST00000228682	NM_005269.2	564	cCt/cTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151836769	151836769	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	65	567	1	ENST00000262189.6:c.14451T>A	p.Tyr4817Ter	p.Y4817*	ENST00000262189	NM_170606.2	4817	taT/taA																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	26	867	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	263	708	6	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0023522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	443	628	11	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
TET1	80312	MSKCC	GRCh37	10	70446283	70446284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	238	657	7	ENST00000373644.4:c.5230dup	p.Arg1744LysfsTer26	p.R1744Kfs*26	ENST00000373644	NM_030625.2	1741	-/A																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201671	66201671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	247	620	5	ENST00000273854.3:c.2831C>T	p.Thr944Met	p.T944M	ENST00000273854	NM_004439.5	944	aCg/aTg																																																																														
PGR	0	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	158	474	2	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga																																																																														
ARID2	0	MSKCC	GRCh37	12	46246350	46246350	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	159	492	5	ENST00000334344.6:c.4444C>T	p.Gln1482Ter	p.Q1482*	ENST00000334344	NM_152641.2	1482	Caa/Taa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500901	8500901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	208	682	12	ENST00000356435.5:c.1981G>A	p.Glu661Lys	p.E661K	ENST00000356435		661	Gag/Aag																																																																														
SRC	0	MSKCC	GRCh37	20	36031708	36031708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	305	845	11	ENST00000358208.4:c.1537G>A	p.Glu513Lys	p.E513K	ENST00000358208		513	Gag/Aag																																																																														
ATM	0	MSKCC	GRCh37	11	108117823	108117823	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	233	616	1	ENST00000278616.4:c.1034T>G	p.Leu345Trp	p.L345W	ENST00000278616	NM_000051.3	345	tTg/tGg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212248	5212248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	203	629	5	ENST00000357368.4:c.4783C>T	p.Arg1595Cys	p.R1595C	ENST00000357368	NM_002850.3	1595	Cgc/Tgc																																																																														
APC	0	MSKCC	GRCh37	5	112175535	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0023522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	277	368	1	ENST00000257430.4:c.4245_4246del	p.Ser1415ArgfsTer7	p.S1415Rfs*7	ENST00000257430	NM_000038.5	1415	aGT/a																																																																														
RB1	0	MSKCC	GRCh37	13	49039171	49039188	+	frameshift_variant	Frame_Shift_Del	DEL	ATTCTATTATAGTATTCT	ATTCTATTATAGTATTCT	G			P-0023522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	99	528	2	ENST00000267163.4:c.2249_2266delinsG	p.Asp750GlyfsTer2	p.D750Gfs*2	ENST00000267163	NM_000321.2	750	gATTCTATTATAGTATTCTat/gGat																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0023546-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	312	832	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023546-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	47	390	0	ENST00000349496.5:c.95A>C	p.Asp32Ala	p.D32A	ENST00000349496	NM_001904.3	32	gAc/gCc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106519962	106519962	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0023546-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	20	243	1	ENST00000359195.3:c.2392-2A>T		p.X798_splice	ENST00000359195	NM_002649.2	798																																																																															
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0023549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	246	694	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	162	938	1	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	19	684	4	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	9	508	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	66	461	5	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	140	758	1	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	133	869	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	30	718	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	52	730	3	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																																																														
NF1	0	MSKCC	GRCh37	17	29588751	29588751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	30	415	0	ENST00000358273.4:c.4600C>T	p.Arg1534Ter	p.R1534*	ENST00000358273	NM_001042492.2	1534	Cga/Tga																																																																														
JAK1	0	MSKCC	GRCh37	1	65312353	65312353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	153	688	0	ENST00000342505.4:c.1966G>A	p.Val656Ile	p.V656I	ENST00000342505	NM_002227.2	656	Gtc/Atc																																																																														
NF1	0	MSKCC	GRCh37	17	29556463	29556463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	34	606	1	ENST00000358273.4:c.2835del	p.Phe945LeufsTer9	p.F945Lfs*9	ENST00000358273	NM_001042492.2	944	Ttt/tt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954272	32954273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs886038189		P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	76	589	2	ENST00000380152.3:c.9253dup	p.Thr3085AsnfsTer26	p.T3085Nfs*26	ENST00000380152		3082	-/A																																																																														
CIC	0	MSKCC	GRCh37	19	42799060	42799060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	95	1008	2	ENST00000575354.2:c.4544G>A	p.Arg1515His	p.R1515H	ENST00000575354	NM_015125.3	1515	cGc/cAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	39	712	0	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	19	381	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	83	661	10	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
PTEN	0	MSKCC	GRCh37	10	89685308	89685308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	85	552	0	ENST00000371953.3:c.203A>G	p.Tyr68Cys	p.Y68C	ENST00000371953	NM_000314.4	68	tAc/tGc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	79	556	3	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
FLT4	0	MSKCC	GRCh37	5	180040101	180040101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	52	763	2	ENST00000261937.6:c.3341C>T	p.Pro1114Leu	p.P1114L	ENST00000261937	NM_182925.4	1114	cCg/cTg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713601	30713601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202168735		P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	22	462	1	ENST00000359013.4:c.1001C>T	p.Thr334Met	p.T334M	ENST00000359013	NM_001024847.2	334	aCg/aTg																																																																														
MST1R	0	MSKCC	GRCh37	3	49928036	49928036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199869962		P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	55	872	3	ENST00000296474.3:c.3692G>A	p.Arg1231His	p.R1231H	ENST00000296474	NM_002447.2	1231	cGc/cAc																																																																														
ATM	0	MSKCC	GRCh37	11	108224583	108224583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	24	446	0	ENST00000278616.4:c.8762C>T	p.Thr2921Met	p.T2921M	ENST00000278616	NM_000051.3	2921	aCg/aTg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45868176	45868176	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140175332		P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	69	1038	3	ENST00000391945.4:c.514G>A	p.Ala172Thr	p.A172T	ENST00000391945	NM_000400.3	172	Gct/Act																																																																														
PTPRS	0	MSKCC	GRCh37	19	5215357	5215357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	148	767	0	ENST00000357368.4:c.4261C>T	p.Arg1421Cys	p.R1421C	ENST00000357368	NM_002850.3	1421	Cgc/Tgc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	40	654	0	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																																																														
EZH2	0	MSKCC	GRCh37	7	148515176	148515176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	120	451	1	ENST00000320356.2:c.1033G>A	p.Ala345Thr	p.A345T	ENST00000320356	NM_004456.4	345	Gct/Act																																																																														
TSHR	0	MSKCC	GRCh37	14	81610522	81610522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	39	459	1	ENST00000298171.2:c.2120G>A	p.Arg707Gln	p.R707Q	ENST00000298171	NM_000369.2	707	cGg/cAg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023717	31023717	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	34	832	0	ENST00000375687.4:c.3202C>T	p.Arg1068Ter	p.R1068*	ENST00000375687	NM_015338.5	1068	Cga/Tga																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226860	2226860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	26	702	1	ENST00000398665.3:c.4340C>T	p.Ala1447Val	p.A1447V	ENST00000398665	NM_032482.2	1447	gCg/gTg																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24167562	24167562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	52	695	1	ENST00000263121.7:c.946C>T	p.Arg316Trp	p.R316W	ENST00000263121	NM_003073.3	316	Cgg/Tgg																																																																														
FLT4	0	MSKCC	GRCh37	5	180056421	180056421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	110	570	0	ENST00000261937.6:c.823C>T	p.Arg275Trp	p.R275W	ENST00000261937	NM_182925.4	275	Cgg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16262483	16262488	+	inframe_deletion	In_Frame_Del	DEL	GTCCCT	GTCCCT	-			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	15	263	0	ENST00000375759.3:c.9759_9764del	p.Val3254_Pro3255del	p.V3254_P3255del	ENST00000375759	NM_015001.2	3250	GTCCCT/-																																																																														
SPEN	0	MSKCC	GRCh37	1	16258350	16258350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	60	748	0	ENST00000375759.3:c.5615C>T	p.Ala1872Val	p.A1872V	ENST00000375759	NM_015001.2	1872	gCa/gTa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139417386	139417386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	218	1125	1	ENST00000277541.6:c.658G>A	p.Val220Met	p.V220M	ENST00000277541	NM_017617.3	220	Gtg/Atg																																																																														
MTOR	0	MSKCC	GRCh37	1	11307747	11307747	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	176	768	0	ENST00000361445.4:c.1160T>C	p.Leu387Pro	p.L387P	ENST00000361445	NM_004958.3	387	cTg/cCg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106421	27106421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	154	603	0	ENST00000324856.7:c.6032T>C	p.Leu2011Pro	p.L2011P	ENST00000324856	NM_006015.4	2011	cTg/cCg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849914	156849914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	198	910	1	ENST00000524377.1:c.2170G>A	p.Gly724Ser	p.G724S	ENST00000524377	NM_002529.3	724	Ggc/Agc																																																																														
SESN3	0	MSKCC	GRCh37	11	94908685	94908685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	152	849	0	ENST00000536441.1:c.1369C>T	p.Arg457Trp	p.R457W	ENST00000536441	NM_144665.3	457	Cgg/Tgg																																																																														
PGR	0	MSKCC	GRCh37	11	100999308	100999308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	42	911	0	ENST00000325455.5:c.494T>C	p.Met165Thr	p.M165T	ENST00000325455	NM_001202474.3	165	aTg/aCg																																																																														
SLX4	0	MSKCC	GRCh37	16	3633396	3633396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	81	1086	1	ENST00000294008.3:c.4855C>T	p.Pro1619Ser	p.P1619S	ENST00000294008	NM_032444.2	1619	Ccg/Tcg																																																																														
SLX4	0	MSKCC	GRCh37	16	3647909	3647909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	58	1154	4	ENST00000294008.3:c.1255G>A	p.Glu419Lys	p.E419K	ENST00000294008	NM_032444.2	419	Gag/Aag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831629	72831629	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs117283459		P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	162	794	0	ENST00000268489.5:c.4952C>T	p.Thr1651Met	p.T1651M	ENST00000268489	NM_006885.3	1651	aCg/aTg																																																																														
NF1	0	MSKCC	GRCh37	17	29559741	29559741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	18	343	0	ENST00000358273.4:c.3338T>C	p.Leu1113Pro	p.L1113P	ENST00000358273	NM_001042492.2	1113	cTt/cCt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78867626	78867626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	148	976	1	ENST00000306801.3:c.2362C>T	p.Arg788Cys	p.R788C	ENST00000306801	NM_020761.2	788	Cgc/Tgc																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48593508	48593508	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793725		P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	109	347	0	ENST00000342988.3:c.1259G>A	p.Arg420His	p.R420H	ENST00000342988	NM_005359.5	420	cGt/cAt																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4099211	4099211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	128	626	1	ENST00000262948.5:c.907C>T	p.Arg303Cys	p.R303C	ENST00000262948	NM_030662.3	303	Cgc/Tgc																																																																														
UPF1	0	MSKCC	GRCh37	19	18966009	18966009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	65	780	1	ENST00000262803.5:c.1502C>T	p.Thr501Met	p.T501M	ENST00000262803	NM_002911.3	501	aCg/aTg																																																																														
CIC	0	MSKCC	GRCh37	19	42798773	42798773	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	55	718	0	ENST00000575354.2:c.4345del	p.Val1449CysfsTer5	p.V1449Cfs*5	ENST00000575354	NM_015125.3	1449	Gtg/tg																																																																														
SOS1	0	MSKCC	GRCh37	2	39250176	39250176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	47	997	0	ENST00000402219.2:c.1393G>A	p.Asp465Asn	p.D465N	ENST00000402219	NM_005633.3	465	Gat/Aat																																																																														
MSH2	0	MSKCC	GRCh37	2	47656894	47656894	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	77	410	1	ENST00000233146.2:c.1090G>T	p.Glu364Ter	p.E364*	ENST00000233146	NM_000251.2	364	Gaa/Taa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31017758	31017758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	57	693	2	ENST00000375687.4:c.620G>A	p.Ser207Asn	p.S207N	ENST00000375687	NM_015338.5	207	aGc/aAc																																																																														
EP300	0	MSKCC	GRCh37	22	41551019	41551019	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	128	598	0	ENST00000263253.7:c.3163C>T	p.Arg1055Ter	p.R1055*	ENST00000263253	NM_001429.3	1055	Cga/Tga																																																																														
PBRM1	0	MSKCC	GRCh37	3	52663037	52663037	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	12	373	0	ENST00000394830.3:c.1316A>C	p.Asn439Thr	p.N439T	ENST00000394830	NM_018313.4	439	aAt/aCt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31423021	31423021	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	152	880	0	ENST00000344624.3:c.3292A>G	p.Ile1098Val	p.I1098V	ENST00000344624		1098	Att/Gtt																																																																														
HLA-B	0	MSKCC	GRCh37	6	31322901	31322901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	78	834	1	ENST00000412585.2:c.995G>A	p.Cys332Tyr	p.C332Y	ENST00000412585	NM_005514.6	332	tGt/tAt																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652128	36652128	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	47	756	0	ENST00000244741.5:c.250C>T	p.Arg84Ter	p.R84*	ENST00000244741	NM_000389.4	84	Cga/Tga																																																																														
PNRC1	0	MSKCC	GRCh37	6	89793797	89793799	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	32	674	0	ENST00000336032.3:c.868_870del	p.Pro290del	p.P290del	ENST00000336032	NM_006813.2	289	tCTCct/tct																																																																														
ETV1	0	MSKCC	GRCh37	7	13946226	13946226	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	50	522	0	ENST00000405192.2:c.872-2A>G		p.X291_splice	ENST00000405192	NM_001163147.1	291																																																																															
RXRA	0	MSKCC	GRCh37	9	137313588	137313588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	74	1012	1	ENST00000481739.1:c.847G>A	p.Ala283Thr	p.A283T	ENST00000481739	NM_002957.4	283	Gcc/Acc																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15818068	15818069	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	40	468	0	ENST00000307771.7:c.202_203dup	p.Gln69GlyfsTer10	p.Q69Gfs*10	ENST00000307771	NM_005089.3	65	-/AG																																																																														
BTK	0	MSKCC	GRCh37	X	100617593	100617593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	40	963	0	ENST00000308731.7:c.476C>T	p.Ala159Val	p.A159V	ENST00000308731	NM_000061.2	159	gCc/gTc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713441	30713441	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	30	679	0	ENST00000359013.4:c.841G>C	p.Ala281Pro	p.A281P	ENST00000359013	NM_001024847.2	281	Gct/Cct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	118	883	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	126	712	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	68	511	1	ENST00000257430.4:c.4463dup	p.Leu1488PhefsTer26	p.L1488Ffs*26	ENST00000257430	NM_000038.5	1487	act/acTt																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395686	45395686	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	113	739	2	ENST00000262160.6:c.448G>T	p.Glu150Ter	p.E150*	ENST00000262160	NM_005901.5	150	Gaa/Taa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127460	55127460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	100	934	3	ENST00000257290.5:c.248C>T	p.Thr83Met	p.T83M	ENST00000257290	NM_006206.4	83	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	426	593	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974782	21974783	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAGT			P-0023603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	101	204	0	ENST00000304494.5:c.41_44dup	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgg/tgACTGg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974782	21974783	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAGT			P-0023603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	101	204	0	ENST00000304494.5:c.41_44dup	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgg/tgACTGg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518112	8518112	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	139	470	0	ENST00000356435.5:c.1279C>T	p.Arg427Ter	p.R427*	ENST00000356435		427	Cga/Tga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827900	40827900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	94	590	0	ENST00000373198.4:c.2528C>A	p.Ser843Tyr	p.S843Y	ENST00000373198	NM_133170.3	843	tCt/tAt																																																																														
MSI1	0	MSKCC	GRCh37	12	120784122	120784122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	127	620	1	ENST00000257552.2:c.863C>T	p.Ser288Phe	p.S288F	ENST00000257552	NM_002442.3	288	tCt/tTt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149457757	149457757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	76	497	0	ENST00000286301.3:c.647G>T	p.Arg216Leu	p.R216L	ENST00000286301	NM_005211.3	216	cGa/cTa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50444346	50444346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	173	367	0	ENST00000331340.3:c.276G>T	p.Met92Ile	p.M92I	ENST00000331340	NM_006060.4	92	atG/atT																																																																														
SMO	0	MSKCC	GRCh37	7	128851955	128851955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	92	662	0	ENST00000249373.3:c.2027G>T	p.Arg676Met	p.R676M	ENST00000249373	NM_005631.4	676	aGg/aTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	114	574	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TSC2	0	MSKCC	GRCh37	16	2126097	2126119	+	frameshift_variant	Frame_Shift_Del	DEL	CATCACGTCATAGCCATGTGGTT	CATCACGTCATAGCCATGTGGTT	-			P-0023626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	108	671	0	ENST00000219476.3:c.2673_2695del	p.His891GlnfsTer16	p.H891Qfs*16	ENST00000219476	NM_000548.3	890	CATCACGTCATAGCCATGTGGTTc/c																																																																														
IRS1	0	MSKCC	GRCh37	2	227660625	227660626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	177	527	0	ENST00000305123.5:c.2829dup	p.Met944AspfsTer31	p.M944Dfs*31	ENST00000305123	NM_005544.2	943	-/G																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	201	474	1				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	119	658	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438046	49438047	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0023636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	140	607	0	ENST00000301067.7:c.5124_5125del	p.Arg1709HisfsTer25	p.R1709Hfs*25	ENST00000301067	NM_003482.3	1708	acACgc/acgc																																																																														
TP53	0	MSKCC	GRCh37	17	7579446	7579452	+	frameshift_variant	Frame_Shift_Del	DEL	TAGGAGC	TAGGAGC	-			P-0023636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	162	620	0	ENST00000269305.4:c.235_241del	p.Ala79HisfsTer42	p.A79Hfs*42	ENST00000269305	NM_001126112.2	79	GCTCCTAca/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7579362	7579362	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	126	734	0	ENST00000269305.4:c.325T>G	p.Phe109Val	p.F109V	ENST00000269305	NM_001126112.2	109	Ttc/Gtc																																																																														
TP53	0	MSKCC	GRCh37	17	7577555	7577556	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0023669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	86	596	1	ENST00000269305.4:c.725_726delinsTT	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGC/tTT																																																																														
AR	0	MSKCC	GRCh37	X	66765304	66765304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	17	322	0	ENST00000374690.3:c.316G>A	p.Gly106Ser	p.G106S	ENST00000374690	NM_000044.3	106	Ggc/Agc																																																																														
CBFB	0	MSKCC	GRCh37	16	67063321	67063321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	128	440	0	ENST00000412916.2:c.11T>G	p.Val4Gly	p.V4G	ENST00000412916		4	gTc/gGc																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0023676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	148	674	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	190	1021	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845366	151845366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	183	857	1	ENST00000262189.6:c.13646G>A	p.Arg4549His	p.R4549H	ENST00000262189	NM_170606.2	4549	cGc/cAc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061466	38061466	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	163	707	0	ENST00000250448.2:c.523T>A	p.Tyr175Asn	p.Y175N	ENST00000250448	NM_004496.3	175	Tac/Aac																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675074	40675074	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	199	909	0	ENST00000249776.8:c.38T>G	p.Phe13Cys	p.F13C	ENST00000249776	NM_033286.3	13	tTc/tGc																																																																														
CUL3	0	MSKCC	GRCh37	2	225422410	225422410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	147	898	0	ENST00000264414.4:c.230T>C	p.Leu77Pro	p.L77P	ENST00000264414	NM_003590.4	77	cTa/cCa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161230	56161230	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	153	771	0	ENST00000399503.3:c.1099del	p.Gln367AsnfsTer2	p.Q367Nfs*2	ENST00000399503	NM_005921.1	367	Caa/aa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177693	56177693	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	84	487	0	ENST00000399503.3:c.2667del	p.Asn891ThrfsTer18	p.N891Tfs*18	ENST00000399503	NM_005921.1	889	gTt/gt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134977857	134977857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	89	518	0	ENST00000398015.3:c.2850C>A	p.Asp950Glu	p.D950E	ENST00000398015	NM_004441.4	950	gaC/gaA																																																																														
FAT1	0	MSKCC	GRCh37	4	187518215	187518215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	74	369	0	ENST00000441802.2:c.12479G>A	p.Arg4160His	p.R4160H	ENST00000441802	NM_005245.3	4160	cGt/cAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0023714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	1228	715	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72845621	72845621	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	212	576	0	ENST00000268489.5:c.3719T>C	p.Val1240Ala	p.V1240A	ENST00000268489	NM_006885.3	1240	gTg/gCg																																																																														
ALK	0	MSKCC	GRCh37	2	29917723	29917723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	249	655	0	ENST00000389048.3:c.945G>A	p.Met315Ile	p.M315I	ENST00000389048	NM_004304.4	315	atG/atA																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101909998	101909999	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAA			P-0023714-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	89	385	0	ENST00000374994.4:c.1321_1322insAAAA	p.Met441LysfsTer8	p.M441Kfs*8	ENST00000374994	NM_004612.2	440	gaa/gAAAAaa																																																																														
MEN1	0	MSKCC	GRCh37	11	64577329	64577330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	249	662	0	ENST00000337652.1:c.252dup	p.Ile85TyrfsTer32	p.I85Yfs*32	ENST00000337652	NM_130803.2	84	-/T																																																																														
TSC2	0	MSKCC	GRCh37	16	2136370	2136372	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0023717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	235	742	0	ENST00000219476.3:c.4842_4844del	p.Ile1614del	p.I1614del	ENST00000219476	NM_000548.3	1613	gaCATc/gac																																																																														
DAXX	0	MSKCC	GRCh37	6	33288261	33288261	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	256	608	0	ENST00000374542.5:c.1147C>T	p.Gln383Ter	p.Q383*	ENST00000374542	NM_001141970.1	383	Caa/Taa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56184083	56184084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	58	313	0	ENST00000399503.3:c.4289dup	p.Cys1430TrpfsTer2	p.C1430Wfs*2	ENST00000399503	NM_005921.1	1430	tgt/tGgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	131	300	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435578	18435578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	67	178	0	ENST00000266497.5:c.563C>T	p.Pro188Leu	p.P188L	ENST00000266497		188	cCg/cTg																																																																														
SOS1	0	MSKCC	GRCh37	2	39281837	39281837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	52	342	0	ENST00000402219.2:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000402219	NM_005633.3	213	cGa/cAa																																																																														
FH	0	MSKCC	GRCh37	1	241667359	241667359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	126	256	0	ENST00000366560.3:c.1091G>A	p.Gly364Glu	p.G364E	ENST00000366560	NM_000143.3	364	gGa/gAa																																																																														
ATM	0	MSKCC	GRCh37	11	108202678	108202679	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	74	212	0	ENST00000278616.4:c.7705_7706del	p.Asp2569Ter	p.D2569*	ENST00000278616	NM_000051.3	2568	AGa/a																																																																														
STAT5B	0	MSKCC	GRCh37	17	40384142	40384142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113461014		P-0023780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	98	286	0	ENST00000293328.3:c.4G>A	p.Ala2Thr	p.A2T	ENST00000293328	NM_012448.3	2	Gct/Act																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138375112	138375112	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138462760		P-0023793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	80	236	0	ENST00000289153.2:c.2947C>T	p.Arg983Cys	p.R983C	ENST00000289153	NM_006219.2	983	Cgc/Tgc																																																																														
CD79B	0	MSKCC	GRCh37	17	62008748	62008748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	94	265	0	ENST00000392795.3:c.68C>A	p.Ala23Glu	p.A23E	ENST00000392795	NM_001039933.1	23	gCa/gAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827997	40827997	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	73	260	0	ENST00000373198.4:c.2431A>G	p.Ser811Gly	p.S811G	ENST00000373198	NM_133170.3	811	Agt/Ggt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980379	1980379	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	284	425	0	ENST00000382891.5:c.3841C>G	p.Pro1281Ala	p.P1281A	ENST00000382891	NM_133335.3	1281	Cct/Gct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	36	297	0				ENST00000310581	NM_198253.2																																																																																
CHEK2	0	MSKCC	GRCh37	22	29130436	29130436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	216	384	0	ENST00000328354.6:c.274C>T	p.Pro92Ser	p.P92S	ENST00000328354	NM_007194.3	92	Ccc/Tcc																																																																														
KDR	0	MSKCC	GRCh37	4	55976861	55976861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	105	379	1	ENST00000263923.4:c.1051C>T	p.Pro351Ser	p.P351S	ENST00000263923	NM_002253.2	351	Cct/Tct																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832595	72832595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	25	180	0	ENST00000268489.5:c.3986G>A	p.Gly1329Glu	p.G1329E	ENST00000268489	NM_006885.3	1329	gGa/gAa																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553668	106553668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	38	225	0	ENST00000369096.4:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000369096	NM_001198.3	545	Gaa/Aaa																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9783244	9783244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	55	367	1	ENST00000377346.4:c.2488C>T	p.Arg830Cys	p.R830C	ENST00000377346	NM_005026.3	830	Cgt/Tgt																																																																														
DIS3	0	MSKCC	GRCh37	13	73333994	73333994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	36	336	0	ENST00000377767.4:c.2816C>T	p.Thr939Ile	p.T939I	ENST00000377767	NM_014953.3	939	aCt/aTt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7978981	7978981	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145046775		P-0023821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	61	406	0	ENST00000319144.4:c.1586G>A	p.Gly529Asp	p.G529D	ENST00000319144	NM_001139.2	529	gGt/gAt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291560	15291560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	157	432	0	ENST00000263388.2:c.3074C>T	p.Pro1025Leu	p.P1025L	ENST00000263388	NM_000435.2	1025	cCc/cTc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45860532	45860532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	156	389	1	ENST00000391945.4:c.1475C>T	p.Pro492Leu	p.P492L	ENST00000391945	NM_000400.3	492	cCt/cTt																																																																														
TOP1	0	MSKCC	GRCh37	20	39742733	39742733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	66	319	1	ENST00000361337.2:c.1576G>A	p.Glu526Lys	p.E526K	ENST00000361337	NM_003286.2	526	Gag/Aag																																																																														
STAG2	0	MSKCC	GRCh37	X	123197767	123197767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	97	376	0	ENST00000218089.9:c.1891G>A	p.Ala631Thr	p.A631T	ENST00000218089	NM_001042749.1	631	Gca/Aca																																																																														
CYLD	0	MSKCC	GRCh37	16	50815298	50815298	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	143	310	0	ENST00000398568.2:c.1651C>T	p.Gln551Ter	p.Q551*	ENST00000398568	NM_001042412.1	551	Cag/Tag																																																																														
AKT3	0	MSKCC	GRCh37	1	243777021	243777021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	147	373	0	ENST00000263826.5:c.648G>C	p.Gln216His	p.Q216H	ENST00000263826	NM_005465.4	216	caG/caC																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934515	9934515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	136	320	0	ENST00000330684.3:c.1640C>G	p.Ser547Cys	p.S547C	ENST00000330684	NM_001134407.1	547	tCt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	33	309	0				ENST00000310581	NM_198253.2																																																																																
RAD50	0	MSKCC	GRCh37	5	131911514	131911514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143802516		P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	82	266	0	ENST00000265335.6:c.259C>T	p.Arg87Cys	p.R87C	ENST00000265335		87	Cgt/Tgt																																																																														
ETV1	0	MSKCC	GRCh37	7	13935508	13935508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	105	153	0	ENST00000405192.2:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000405192	NM_001163147.1	450	Gaa/Aaa																																																																														
AR	0	MSKCC	GRCh37	X	66863145	66863145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	77	188	0	ENST00000374690.3:c.1664C>T	p.Pro555Leu	p.P555L	ENST00000374690	NM_000044.3	555	cCa/cTa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274115	10274115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	71	383	2	ENST00000330684.3:c.154C>T	p.Arg52Ter	p.R52*	ENST00000330684	NM_001134407.1	52	Cga/Tga																																																																														
BRAF	0	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	15	273	0	ENST00000288602.6:c.1781A>C	p.Asp594Ala	p.D594A	ENST00000288602	NM_004333.4	594	gAt/gCt																																																																														
PAK7	0	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	61	274	0	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																																																														
TERT	0	MSKCC	GRCh37	5	1294370	1294370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	141	409	0	ENST00000310581.5:c.631G>A	p.Gly211Arg	p.G211R	ENST00000310581	NM_198253.2	211	Ggg/Agg																																																																														
MGA	0	MSKCC	GRCh37	15	42052693	42052693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	101	341	0	ENST00000219905.7:c.7364C>T	p.Ser2455Phe	p.S2455F	ENST00000219905	NM_001164273.1	2455	tCt/tTt																																																																														
ARID2	0	MSKCC	GRCh37	12	46285666	46285666	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	110	263	0	ENST00000334344.6:c.5026C>T	p.Gln1676Ter	p.Q1676*	ENST00000334344	NM_152641.2	1676	Cag/Tag																																																																														
ARID2	0	MSKCC	GRCh37	12	46231149	46231149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	85	298	0	ENST00000334344.6:c.1069C>T	p.His357Tyr	p.H357Y	ENST00000334344	NM_152641.2	357	Cat/Tat																																																																														
SPOP	0	MSKCC	GRCh37	17	47700145	47700145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	91	256	0	ENST00000347630.2:c.28C>T	p.Pro10Ser	p.P10S	ENST00000347630	NM_001007230.1	10	Ccg/Tcg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93955074	93955074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	143	220	0	ENST00000369303.4:c.2824G>A	p.Asp942Asn	p.D942N	ENST00000369303	NM_004440.3	942	Gat/Aat																																																																														
IGF1	0	MSKCC	GRCh37	12	102811603	102811603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	97	380	0	ENST00000307046.8:c.581G>A	p.Gly194Glu	p.G194E	ENST00000307046	NM_001111285.1	194	gGa/gAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980769	40980769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	68	305	0	ENST00000373198.4:c.1717G>A	p.Gly573Ser	p.G573S	ENST00000373198	NM_133170.3	573	Ggc/Agc																																																																														
ARID2	0	MSKCC	GRCh37	12	46231189	46231189	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	74	265	0	ENST00000334344.6:c.1109T>G	p.Leu370Ter	p.L370*	ENST00000334344	NM_152641.2	370	tTa/tGa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099959	27099959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	100	402	0	ENST00000324856.7:c.3838C>T	p.Pro1280Ser	p.P1280S	ENST00000324856	NM_006015.4	1280	Ccc/Tcc																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439578	51439578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	81	197	0	ENST00000262662.1:c.143G>A	p.Gly48Glu	p.G48E	ENST00000262662		48	gGa/gAa																																																																														
NEGR1	0	MSKCC	GRCh37	1	72241948	72241948	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	66	232	0	ENST00000357731.5:c.442A>C	p.Met148Leu	p.M148L	ENST00000357731	NM_173808.2	148	Atg/Ctg																																																																														
CBL	0	MSKCC	GRCh37	11	119148992	119148993	+	missense_variant	Missense_Mutation	DNP	TC	TC	GG			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	88	330	0	ENST00000264033.4:c.1212_1213delinsGG	p.Cys404_Leu405delinsTrpVal	p.C404_L405delinsWV	ENST00000264033	NM_005188.3	404	tgTCtt/tgGGtt																																																																														
CBL	0	MSKCC	GRCh37	11	119149244	119149244	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	81	312	0	ENST00000264033.4:c.1252T>G	p.Phe418Val	p.F418V	ENST00000264033	NM_005188.3	418	Ttc/Gtc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18800819	18800819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	55	200	0	ENST00000266497.5:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000266497		1399	Gat/Aat																																																																														
FANCA	0	MSKCC	GRCh37	16	89836990	89836990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	111	426	0	ENST00000389301.3:c.2204G>A	p.Ser735Asn	p.S735N	ENST00000389301	NM_000135.2	735	aGt/aAt																																																																														
NF1	0	MSKCC	GRCh37	17	29560082	29560082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	60	194	0	ENST00000358273.4:c.3559C>T	p.Leu1187Phe	p.L1187F	ENST00000358273	NM_001042492.2	1187	Ctt/Ttt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59886117	59886117	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs140097800		P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	74	191	0	ENST00000259008.2:c.629C>T	p.Pro210Leu	p.P210L	ENST00000259008	NM_032043.2	210	cCc/cTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15284915	15284915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	75	430	0	ENST00000263388.2:c.4700C>T	p.Pro1567Leu	p.P1567L	ENST00000263388	NM_000435.2	1567	cCc/cTc																																																																														
JAK3	0	MSKCC	GRCh37	19	17943709	17943709	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	83	338	0	ENST00000458235.1:c.2380G>C	p.Gly794Arg	p.G794R	ENST00000458235	NM_000215.3	794	Ggt/Cgt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279551	18279552	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	91	310	1	ENST00000222254.8:c.1824_1825delinsAA	p.Met608_Glu609delinsIleLys	p.M608_E609delinsIK	ENST00000222254	NM_005027.3	608	atGGag/atAAag																																																																														
ALK	0	MSKCC	GRCh37	2	29456450	29456450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	151	481	0	ENST00000389048.3:c.2468G>A	p.Gly823Glu	p.G823E	ENST00000389048	NM_004304.4	823	gGa/gAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561525	9561525	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	97	366	0	ENST00000353224.5:c.257T>C	p.Leu86Pro	p.L86P	ENST00000353224	NM_177990.2	86	cTa/cCa																																																																														
SRC	0	MSKCC	GRCh37	20	36012753	36012753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	56	185	2	ENST00000358208.4:c.197G>A	p.Gly66Asp	p.G66D	ENST00000358208		66	gGc/gAc																																																																														
NF2	0	MSKCC	GRCh37	22	30057249	30057249	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	82	341	0	ENST00000338641.4:c.731A>T	p.Tyr244Phe	p.Y244F	ENST00000338641	NM_000268.3	244	tAt/tTt																																																																														
RAF1	0	MSKCC	GRCh37	3	12627290	12627290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	107	272	0	ENST00000251849.4:c.1426C>T	p.Leu476Phe	p.L476F	ENST00000251849	NM_002880.3	476	Ctc/Ttc																																																																														
SETD2	0	MSKCC	GRCh37	3	47144843	47144843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	131	368	0	ENST00000409792.3:c.4910C>T	p.Thr1637Ile	p.T1637I	ENST00000409792	NM_014159.6	1637	aCc/aTc																																																																														
RHOA	0	MSKCC	GRCh37	3	49405928	49405928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	128	403	2	ENST00000418115.1:c.210G>T	p.Arg70Ser	p.R70S	ENST00000418115	NM_001664.2	70	agG/agT																																																																														
TP63	0	MSKCC	GRCh37	3	189584539	189584539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	76	260	0	ENST00000264731.3:c.835C>T	p.Pro279Ser	p.P279S	ENST00000264731	NM_003722.4	279	Ccc/Tcc																																																																														
FLT4	0	MSKCC	GRCh37	5	180030331	180030331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	76	393	0	ENST00000261937.6:c.3953G>A	p.Arg1318Lys	p.R1318K	ENST00000261937	NM_182925.4	1318	aGg/aAg																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553017	106553017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	209	423	0	ENST00000369096.4:c.982C>T	p.Pro328Ser	p.P328S	ENST00000369096	NM_001198.3	328	Ccc/Tcc																																																																														
CARD11	0	MSKCC	GRCh37	7	2978383	2978383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	176	502	0	ENST00000396946.4:c.947G>A	p.Arg316Lys	p.R316K	ENST00000396946	NM_032415.4	316	aGg/aAg																																																																														
SOX17	0	MSKCC	GRCh37	8	55371874	55371874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	35	192	0	ENST00000297316.4:c.564C>A	p.Phe188Leu	p.F188L	ENST00000297316	NM_022454.3	188	ttC/ttA																																																																														
GNAQ	0	MSKCC	GRCh37	9	80343439	80343439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	88	196	0	ENST00000286548.4:c.880G>A	p.Glu294Lys	p.E294K	ENST00000286548	NM_002072.3	294	Gaa/Aaa																																																																														
ATRX	0	MSKCC	GRCh37	X	76937338	76937338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	119	199	0	ENST00000373344.5:c.3410G>A	p.Arg1137Lys	p.R1137K	ENST00000373344	NM_000489.3	1137	aGa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	221	803	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	124	812	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	254	459	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274195	10274195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	74	435	0	ENST00000330684.3:c.74C>T	p.Ala25Val	p.A25V	ENST00000330684	NM_001134407.1	25	gCg/gTg																																																																														
ATM	0	MSKCC	GRCh37	11	108201037	108201037	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	144	566	0	ENST00000278616.4:c.7404A>C	p.Glu2468Asp	p.E2468D	ENST00000278616	NM_000051.3	2468	gaA/gaC																																																																														
FAT1	0	MSKCC	GRCh37	4	187517874	187517874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	102	636	0	ENST00000441802.2:c.12820G>A	p.Glu4274Lys	p.E4274K	ENST00000441802	NM_005245.3	4274	Gaa/Aaa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151947971	151947971	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145240734		P-0023861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	182	796	0	ENST00000262189.6:c.1702G>A	p.Gly568Ser	p.G568S	ENST00000262189	NM_170606.2	568	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	24	431	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MGA	0	MSKCC	GRCh37	15	42003150	42003150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	28	437	0	ENST00000219905.7:c.2687G>A	p.Arg896Gln	p.R896Q	ENST00000219905	NM_001164273.1	896	cGa/cAa																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467509	66467509	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	14	222	0	ENST00000273854.3:c.760C>T	p.Gln254Ter	p.Q254*	ENST00000273854	NM_004439.5	254	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	217	560	0	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	238	550	0	ENST00000269305.4:c.814G>C	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ctg																																																																														
EGFR	0	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0023902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	405	382	0	ENST00000275493.2:c.2239_2240delTTinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021452	31021452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023902-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	69	365	0	ENST00000375687.4:c.1451A>T	p.Glu484Val	p.E484V	ENST00000375687	NM_015338.5	484	gAg/gTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5258035	5258035	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	68	498	2	ENST00000357368.4:c.699C>A	p.Tyr233Ter	p.Y233*	ENST00000357368	NM_002850.3	233	taC/taA																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11107010	11107010	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	62	671	0	ENST00000344626.4:c.1715A>T	p.Lys572Met	p.K572M	ENST00000344626	NM_003072.3	572	aAg/aTg																																																																														
VHL	0	MSKCC	GRCh37	3	10191480	10191481	+	missense_variant	Missense_Mutation	DNP	TG	TG	CA			P-0023955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	54	524	1	ENST00000256474.2:c.473_474inv	p.Leu158Pro	p.L158P	ENST00000256474	NM_000551.3	158	cTG/cCA																																																																														
SETD2	0	MSKCC	GRCh37	3	47142952	47142953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	76	528	0	ENST00000409792.3:c.5010dup	p.Tyr1671IlefsTer41	p.Y1671Ifs*41	ENST00000409792	NM_014159.6	1670	-/A																																																																														
PBRM1	0	MSKCC	GRCh37	3	52682418	52682418	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	79	652	0	ENST00000394830.3:c.755T>C	p.Ile252Thr	p.I252T	ENST00000394830	NM_018313.4	252	aTa/aCa																																																																														
CASP8	0	MSKCC	GRCh37	2	202150004	202150004	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	378	910	0	ENST00000358485.4:c.1445A>T	p.Gln482Leu	p.Q482L	ENST00000358485	NM_001080125.1	482	cAg/cTg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223483	53223488	+	inframe_deletion	In_Frame_Del	DEL	GGCGCG	GGCGCG	-			P-0023961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	129	385	0	ENST00000375401.3:c.3871_3876del	p.Ala1292_Arg1293del	p.A1292_R1293del	ENST00000375401	NM_004187.3	1291	CGCGCC/-																																																																														
RXRA	0	MSKCC	GRCh37	9	137328377	137328382	+	missense_variant	Missense_Mutation	ONP	CTCTTC	CTCTTC	ATCTTG			P-0023961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1595	390	1127	2	ENST00000481739.1:c.1306_1311delinsATCTTG	p.Leu436_Phe437delinsIleLeu	p.L436_F437delinsIL	ENST00000481739	NM_002957.4	436	CTCTTC/ATCTTG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	61	786	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	32	771	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																														
RNF43	0	MSKCC	GRCh37	17	56492700	56492700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	38	703	0	ENST00000407977.2:c.239G>A	p.Gly80Glu	p.G80E	ENST00000407977		80	gGa/gAa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575152	48575152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	32	562	0	ENST00000342988.3:c.346C>A	p.Gln116Lys	p.Q116K	ENST00000342988	NM_005359.5	116	Cag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188404	32188404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	18	619	0	ENST00000375023.3:c.937G>A	p.Glu313Lys	p.E313K	ENST00000375023	NM_004557.3	313	Gaa/Aaa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974711	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGGCAGCGC	TTGGGCAGCGC	-			P-0023965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	21	544	0	ENST00000304494.5:c.106_116del	p.Ala36ArgfsTer4	p.A36Rfs*4	ENST00000304494	NM_000077.4	36	GCGCTGCCCAAc/c																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974711	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGGCAGCGC	TTGGGCAGCGC	-			P-0023965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	21	544	0	ENST00000304494.5:c.106_116del	p.Ala36ArgfsTer4	p.A36Rfs*4	ENST00000304494	NM_000077.4	36	GCGCTGCCCAAc/c																																																																														
CDK12	0	MSKCC	GRCh37	17	37627919	37627919	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	205	898	1	ENST00000447079.4:c.1834C>T	p.Gln612Ter	p.Q612*	ENST00000447079	NM_015083.1	612	Caa/Taa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061188	38061205	+	inframe_deletion	In_Frame_Del	DEL	CTTGAAGCGCTTCTGGCG	CTTGAAGCGCTTCTGGCG	-			P-0023988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	557	644	0	ENST00000250448.2:c.784_801del	p.Arg262_Lys267del	p.R262_K267del	ENST00000250448	NM_004496.3	262	CGCCAGAAGCGCTTCAAG/-																																																																														
CDK12	0	MSKCC	GRCh37	17	37649101	37649101	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	136	709	0	ENST00000447079.4:c.2206G>C	p.Gly736Arg	p.G736R	ENST00000447079	NM_015083.1	736	Gga/Cga																																																																														
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	104	680	2	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
PAK7	0	MSKCC	GRCh37	20	9561490	9561490	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	52	720	0	ENST00000353224.5:c.292A>G	p.Asn98Asp	p.N98D	ENST00000353224	NM_177990.2	98	Aac/Gac																																																																														
CARD11	0	MSKCC	GRCh37	7	2959241	2959241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	64	687	0	ENST00000396946.4:c.2275C>G	p.Arg759Gly	p.R759G	ENST00000396946	NM_032415.4	759	Cgg/Ggg																																																																														
SETD2	0	MSKCC	GRCh37	3	47125838	47125838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	130	385	0	ENST00000409792.3:c.5432C>T	p.Thr1811Ile	p.T1811I	ENST00000409792	NM_014159.6	1811	aCt/aTt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0024045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	184	725	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	303	1132	3	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
IDH2	0	MSKCC	GRCh37	15	90631979	90631979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0024045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	238	631	0	ENST00000330062.3:c.374A>G	p.Glu125Gly	p.E125G	ENST00000330062	NM_002168.2	125	gAg/gGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	237	549	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11106946	11106946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	48	833	0	ENST00000344626.4:c.1651G>C	p.Ala551Pro	p.A551P	ENST00000344626	NM_003072.3	551	Gcc/Ccc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0024069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	179	709	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	15	506	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0024069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	25	370	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0024069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	97	720	0	ENST00000307102.5:c.303_308delGGAGAT	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc																																																																														
ATM	0	MSKCC	GRCh37	11	108216546	108216546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	45	550	0	ENST00000278616.4:c.8495G>A	p.Arg2832His	p.R2832H	ENST00000278616	NM_000051.3	2832	cGt/cAt																																																																														
ROS1	0	MSKCC	GRCh37	6	117609902	117609902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	79	693	0	ENST00000368508.3:c.6797C>T	p.Thr2266Met	p.T2266M	ENST00000368508	NM_002944.2	2266	aCg/aTg																																																																														
MED12	0	MSKCC	GRCh37	X	70344159	70344159	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199582086		P-0024069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	50	596	4	ENST00000374080.3:c.1895G>A	p.Arg632Gln	p.R632Q	ENST00000374080		632	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112173578	112173578	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	42	423	0	ENST00000257430.4:c.2287G>T	p.Glu763Ter	p.E763*	ENST00000257430	NM_000038.5	763	Gaa/Taa																																																																														
CHEK1	0	MSKCC	GRCh37	11	125514030	125514030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	42	687	1	ENST00000428830.2:c.968C>T	p.Thr323Ile	p.T323I	ENST00000428830	NM_001114121.2	323	aCa/aTa																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250778	26250778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	27	440	0	ENST00000446824.2:c.56A>T	p.Lys19Met	p.K19M	ENST00000446824	NM_021018.2	19	aAg/aTg																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	178	374	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
SOX17	0	MSKCC	GRCh37	8	55371830	55371830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	83	150	0	ENST00000297316.4:c.520G>A	p.Val174Met	p.V174M	ENST00000297316	NM_022454.3	174	Gtg/Atg																																																																														
TET1	0	MSKCC	GRCh37	10	70406599	70406599	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	361	794	0	ENST00000373644.4:c.4113T>G	p.Ser1371Arg	p.S1371R	ENST00000373644	NM_030625.2	1371	agT/agG																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267535	198267535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	154	426	0	ENST00000335508.6:c.1822A>G	p.Thr608Ala	p.T608A	ENST00000335508	NM_012433.2	608	Act/Gct																																																																														
APC	0	MSKCC	GRCh37	5	112176427	112176428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	102	319	0	ENST00000257430.4:c.5138dup	p.Leu1713PhefsTer3	p.L1713Ffs*3	ENST00000257430	NM_000038.5	1712	-/T																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	148	892	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0024110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	74	302	0				ENST00000310581	NM_198253.2																																																																																
PTEN	0	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	121	907	0	ENST00000371953.3:c.395G>C	p.Gly132Ala	p.G132A	ENST00000371953	NM_000314.4	132	gGt/gCt																																																																														
RET	0	MSKCC	GRCh37	10	43601986	43601986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	170	1135	0	ENST00000355710.3:c.1030G>C	p.Gly344Arg	p.G344R	ENST00000355710	NM_020975.4	344	Ggc/Cgc																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804401	46804402	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	49	662	2	ENST00000290295.7:c.605_606delinsTT	p.Ser202Phe	p.S202F	ENST00000290295	NM_006361.5	202	tCC/tTT																																																																														
NTRK2	0	MSKCC	GRCh37	9	87482209	87482209	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	88	1217	0	ENST00000277120.3:c.1496A>T	p.His499Leu	p.H499L	ENST00000277120		499	cAc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	257	601	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	319	599	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	203	375	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
AMER1	0	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	740	386	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																																																														
FLT1	0	MSKCC	GRCh37	13	29012410	29012410	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	887	585	0	ENST00000282397.4:c.461T>G	p.Leu154Arg	p.L154R	ENST00000282397	NM_002019.4	154	cTc/cGc																																																																														
APC	0	MSKCC	GRCh37	5	112176030	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	166	363	0	ENST00000257430.4:c.4741delT	p.Ser1581LeufsTer69	p.S1581Lfs*69	ENST00000257430	NM_000038.5	1580	aTt/at																																																																														
SOX9	0	MSKCC	GRCh37	17	70120351	70120352	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	367	818	0	ENST00000245479.2:c.1354dupT	p.Tyr452LeufsTer126	p.Y452Lfs*126	ENST00000245479	NM_000346.3	451	-/T																																																																														
FAT1	0	MSKCC	GRCh37	4	187541582	187541582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	185	427	0	ENST00000441802.2:c.6158T>C	p.Val2053Ala	p.V2053A	ENST00000441802	NM_005245.3	2053	gTg/gCg																																																																														
APC	0	MSKCC	GRCh37	5	112174600	112174600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	194	449	1	ENST00000257430.4:c.3309G>T	p.Arg1103Ser	p.R1103S	ENST00000257430	NM_000038.5	1103	agG/agT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	60	739	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0024133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	58	803	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78923245	78923245	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	51	717	0	ENST00000306801.3:c.3268G>A	p.Asp1090Asn	p.D1090N	ENST00000306801	NM_020761.2	1090	Gat/Aat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828372	72828372	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	66	633	0	ENST00000268489.5:c.8209G>T	p.Glu2737Ter	p.E2737*	ENST00000268489	NM_006885.3	2737	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578264	7578265	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0024214-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	156	793	0	ENST00000269305.4:c.583_584dup	p.Arg196SerfsTer52	p.R196Sfs*52	ENST00000269305	NM_001126112.2	195	atc/atATc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0024230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	141	527	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	42	762	0	ENST00000263967.3:c.1634A>T	p.Glu545Val	p.E545V	ENST00000263967	NM_006218.2	545	gAg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	57	717	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	96	800	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
BRD4	0	MSKCC	GRCh37	19	15374266	15374266	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	40	554	0	ENST00000263377.2:c.1306G>C	p.Asp436His	p.D436H	ENST00000263377	NM_058243.2	436	Gac/Cac																																																																														
BRD4	0	MSKCC	GRCh37	19	15374304	15374304	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	54	768	0	ENST00000263377.2:c.1268G>C	p.Arg423Pro	p.R423P	ENST00000263377	NM_058243.2	423	cGa/cCa																																																																														
BRD4	0	MSKCC	GRCh37	19	15374317	15374317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	53	824	1	ENST00000263377.2:c.1255G>A	p.Gly419Ser	p.G419S	ENST00000263377	NM_058243.2	419	Ggt/Agt																																																																														
BRD4	0	MSKCC	GRCh37	19	15374332	15374332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	58	809	0	ENST00000263377.2:c.1240G>A	p.Asp414Asn	p.D414N	ENST00000263377	NM_058243.2	414	Gat/Aat																																																																														
BRD4	0	MSKCC	GRCh37	19	15374353	15374353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	50	750	0	ENST00000263377.2:c.1219C>G	p.Leu407Val	p.L407V	ENST00000263377	NM_058243.2	407	Ctg/Gtg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974795	21974795	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	11	194	0	ENST00000304494.5:c.32del	p.Pro11LeufsTer15	p.P11Lfs*15	ENST00000304494	NM_000077.4	11	cCt/ct																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974795	21974795	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	11	194	0	ENST00000304494.5:c.32del	p.Pro11LeufsTer15	p.P11Lfs*15	ENST00000304494	NM_000077.4	11	cCt/ct																																																																														
KDM6A	0	MSKCC	GRCh37	X	44948998	44949002	+	frameshift_variant	Frame_Shift_Del	DEL	AATTT	AATTT	-			P-0024244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	27	251	0	ENST00000377967.4:c.3559_3563del	p.Asn1187ProfsTer10	p.N1187Pfs*10	ENST00000377967	NM_021140.2	1187	AATTTc/c																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	423	672	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	488	756	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	85	375	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	140	613	2	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789621	3789621	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	210	607	0	ENST00000262367.5:c.4238A>G	p.His1413Arg	p.H1413R	ENST00000262367	NM_004380.2	1413	cAc/cGc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120132	70120133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	196	226	0	ENST00000245479.2:c.1137_1138dupGC	p.His380ArgfsTer4	p.H380Rfs*4	ENST00000245479	NM_000346.3	378	-/GC																																																																														
ATRX	0	MSKCC	GRCh37	X	76940077	76940077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	141	587	0	ENST00000373344.5:c.671C>T	p.Ala224Val	p.A224V	ENST00000373344	NM_000489.3	224	gCg/gTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	108	498	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	126	839	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
EZH2	0	MSKCC	GRCh37	7	148513825	148513825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	26	656	1	ENST00000320356.2:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000320356	NM_004456.4	486	Ccc/Tcc																																																																														
SPEN	0	MSKCC	GRCh37	1	16256676	16256676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	38	603	0	ENST00000375759.3:c.3941C>A	p.Ser1314Tyr	p.S1314Y	ENST00000375759	NM_015001.2	1314	tCt/tAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089629	27089629	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	90	706	2	ENST00000324856.7:c.2586del	p.Met863TrpfsTer28	p.M863Wfs*28	ENST00000324856	NM_006015.4	862	tCc/tc																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66781559	66781559	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	30	616	0	ENST00000307102.5:c.967C>G	p.Pro323Ala	p.P323A	ENST00000307102	NM_002755.3	323	Cca/Gca																																																																														
MITF	0	MSKCC	GRCh37	3	69987049	69987049	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	97	739	0	ENST00000352241.4:c.431C>G	p.Ser144Cys	p.S144C	ENST00000352241	NM_198159.2	144	tCt/tGt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139403478	139403478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	73	1020	0	ENST00000277541.6:c.3015C>A	p.Phe1005Leu	p.F1005L	ENST00000277541	NM_017617.3	1005	ttC/ttA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	92	940	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1036	49	1195	1	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
TET1	0	MSKCC	GRCh37	10	70426901	70426901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	58	634	0	ENST00000373644.4:c.4561G>T	p.Val1521Leu	p.V1521L	ENST00000373644	NM_030625.2	1521	Gtg/Ttg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5244278	5244279	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	54	1014	2	ENST00000357368.4:c.1203_1204delinsTT	p.Trp401_Val402delinsCysLeu	p.W401_V402delinsCL	ENST00000357368	NM_002850.3	401	tgGGtg/tgTTtg																																																																														
INSR	0	MSKCC	GRCh37	19	7120714	7120714	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	58	1190	1	ENST00000302850.5:c.3576A>T	p.Lys1192Asn	p.K1192N	ENST00000302850	NM_000208.2	1192	aaA/aaT																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197198	26197198	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	41	752	0	ENST00000356476.2:c.281A>T	p.Gln94Leu	p.Q94L	ENST00000356476		94	cAg/cTg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509581	106509581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	48	770	1	ENST00000359195.3:c.1575C>A	p.His525Gln	p.H525Q	ENST00000359195	NM_002649.2	525	caC/caA																																																																														
RASA1	0	MSKCC	GRCh37	5	86685310	86685310	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	46	230	0	ENST00000274376.6:c.3026T>G	p.Leu1009Arg	p.L1009R	ENST00000274376	NM_002890.2	1009	cTt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	430	528	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	413	797	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0024328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	118	460	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0024328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	118	460	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0024328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	118	460	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575203	48575203	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	178	419	0	ENST00000342988.3:c.397T>A	p.Tyr133Asn	p.Y133N	ENST00000342988	NM_005359.5	133	Tac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	254	811	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805527	46805527	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	121	921	0	ENST00000290295.7:c.429C>A	p.Tyr143Ter	p.Y143*	ENST00000290295	NM_006361.5	143	taC/taA																																																																														
JAK3	0	MSKCC	GRCh37	19	17954586	17954586	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	50	701	2	ENST00000458235.1:c.308G>A	p.Arg103His	p.R103H	ENST00000458235	NM_000215.3	103	cGc/cAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39923784	39923784	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	140	875	0	ENST00000378444.4:c.3307G>C	p.Glu1103Gln	p.E1103Q	ENST00000378444	NM_001123385.1	1103	Gag/Cag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717715	89717716	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1393832338		P-0024338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	34	528	0	ENST00000371953.3:c.741dup	p.Pro248ThrfsTer5	p.P248Tfs*5	ENST00000371953	NM_000314.4	247	tta/ttAa																																																																														
MEN1	0	MSKCC	GRCh37	11	64577481	64577481	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	262	466	0	ENST00000337652.1:c.101T>G	p.Leu34Arg	p.L34R	ENST00000337652	NM_130803.2	34	cTg/cGg																																																																														
DAXX	0	MSKCC	GRCh37	6	33288570	33288570	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	94	508	0	ENST00000374542.5:c.982C>G	p.Arg328Gly	p.R328G	ENST00000374542	NM_001141970.1	328	Cgt/Ggt																																																																														
DAXX	0	MSKCC	GRCh37	6	33288945	33288945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	185	434	0	ENST00000374542.5:c.607del	p.Arg203GlyfsTer26	p.R203Gfs*26	ENST00000374542	NM_001141970.1	203	Cgg/gg																																																																														
ATRX	0	MSKCC	GRCh37	X	76813098	76813098	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024338-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	28	654	0	ENST00000373344.5:c.6523A>C	p.Ile2175Leu	p.I2175L	ENST00000373344	NM_000489.3	2175	Att/Ctt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	42	269	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	43	725	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP63	0	MSKCC	GRCh37	3	189587161	189587161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	39	680	1	ENST00000264731.3:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000264731	NM_003722.4	393	cGa/cAa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431747	49431747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	43	696	0	ENST00000301067.7:c.9392C>T	p.Pro3131Leu	p.P3131L	ENST00000301067	NM_003482.3	3131	cCt/cTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438728	49438728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	61	725	0	ENST00000301067.7:c.4762G>A	p.Glu1588Lys	p.E1588K	ENST00000301067	NM_003482.3	1588	Gaa/Aaa																																																																														
MSI2	0	MSKCC	GRCh37	17	55704619	55704619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	72	793	0	ENST00000284073.2:c.682C>T	p.Arg228Cys	p.R228C	ENST00000284073	NM_138962.2	228	Cgt/Tgt																																																																														
PMAIP1	0	MSKCC	GRCh37	18	57569920	57569920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	47	430	1	ENST00000316660.6:c.100G>A	p.Asp34Asn	p.D34N	ENST00000316660	NM_021127.2	34	Gac/Aac																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610200	10610201	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	104	766	0	ENST00000171111.5:c.509_510delinsTT	p.Ala170Val	p.A170V	ENST00000171111	NM_203500.1	170	gCC/gTT																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224086	36224087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	51	702	0	ENST00000222270.7:c.6641dup	p.Val2215SerfsTer88	p.V2215Sfs*88	ENST00000222270	NM_014727.1	2212	-/C																																																																														
REL	0	MSKCC	GRCh37	2	61128131	61128131	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	43	505	0	ENST00000295025.8:c.307C>T	p.Gln103Ter	p.Q103*	ENST00000295025	NM_002908.2	103	Caa/Taa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99155399	99155399	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	41	516	0	ENST00000074304.5:c.625C>T	p.Arg209Ter	p.R209*	ENST00000074304	NM_001134224.1	209	Cga/Tga																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187219	38187219	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	73	903	2	ENST00000317025.8:c.1258C>T	p.Arg420Ter	p.R420*	ENST00000317025	NM_023034.1	420	Cga/Tga																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205605	38205605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	49	823	0	ENST00000317025.8:c.85C>T	p.Arg29Cys	p.R29C	ENST00000317025	NM_023034.1	29	Cgt/Tgt																																																																														
SOX17	0	MSKCC	GRCh37	8	55370867	55370868	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	31	444	0	ENST00000297316.4:c.169_170delinsAA	p.Gly57Lys	p.G57K	ENST00000297316	NM_022454.3	57	GGg/AAg																																																																														
SYK	0	MSKCC	GRCh37	9	93606356	93606356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	57	637	0	ENST00000375746.1:c.176G>A	p.Arg59Lys	p.R59K	ENST00000375746	NM_001174167.1	59	aGg/aAg																																																																														
BCOR	0	MSKCC	GRCh37	X	39933691	39933691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	34	317	0	ENST00000378444.4:c.908C>T	p.Ala303Val	p.A303V	ENST00000378444	NM_001123385.1	303	gCc/gTc																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0024348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	80	778	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	431	921	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
RB1	0	MSKCC	GRCh37	13	48954299	48954299	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0024351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	226	528	1	ENST00000267163.4:c.1422-2A>T		p.X474_splice	ENST00000267163	NM_000321.2	474																																																																															
KDM5A	0	MSKCC	GRCh37	12	459866	459866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	67	980	0	ENST00000399788.2:c.1229G>A	p.Gly410Glu	p.G410E	ENST00000399788	NM_001042603.1	410	gGa/gAa																																																																														
MAX	0	MSKCC	GRCh37	14	65568266	65568266	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	173	420	1	ENST00000358664.4:c.61G>T	p.Ala21Ser	p.A21S	ENST00000358664	NM_002382.4	21	Gcg/Tcg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274137	10274137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	302	694	0	ENST00000330684.3:c.132C>A	p.His44Gln	p.H44Q	ENST00000330684	NM_001134407.1	44	caC/caA																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347060	89347060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	312	686	0	ENST00000301030.4:c.5890G>A	p.Gly1964Arg	p.G1964R	ENST00000301030	NM_001256183.1	1964	Ggg/Agg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1976588	1976588	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0024351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	355	790	0	ENST00000382891.5:c.3373-2A>T		p.X1125_splice	ENST00000382891	NM_133335.3	1125																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	74	334	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CBFB	0	MSKCC	GRCh37	16	67070527	67070543	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGATTTTTCTAAAAGGC	TGATTTTTCTAAAAGGC	-			P-0024364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	40	216	0	ENST00000412916.2:c.166-14_168del		p.X56_splice	ENST00000412916		56																																																																															
RTEL1	0	MSKCC	GRCh37	20	62326168	62326168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	113	598	0	ENST00000508582.2:c.3256G>A	p.Ala1086Thr	p.A1086T	ENST00000508582		1086	Gcc/Acc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928067	178928067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	97	536	0	ENST00000263967.3:c.1345C>G	p.Pro449Ala	p.P449A	ENST00000263967	NM_006218.2	449	Cct/Gct																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873376	151873377	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	82	320	0	ENST00000262189.6:c.9161_9162insC	p.Leu3055SerfsTer32	p.L3055Sfs*32	ENST00000262189	NM_170606.2	3054	ctt/ctCt																																																																														
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	372	573	1	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																																																														
ERF	0	MSKCC	GRCh37	19	42753454	42753454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	129	597	0	ENST00000222329.4:c.810G>C	p.Met270Ile	p.M270I	ENST00000222329	NM_006494.2	270	atG/atC																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55146544	55146544	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	55	331	0	ENST00000257290.5:c.2218A>G	p.Thr740Ala	p.T740A	ENST00000257290	NM_006206.4	740	Aca/Gca																																																																														
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	142	751	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	277	497	1	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508082	106508082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	73	202	0	ENST00000359195.3:c.76C>T	p.Arg26Cys	p.R26C	ENST00000359195	NM_002649.2	26	Cgc/Tgc																																																																														
IKBKE	0	MSKCC	GRCh37	1	206648329	206648329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55721947		P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	98	600	1	ENST00000367120.3:c.350G>A	p.Arg117His	p.R117H	ENST00000367120	NM_014002.3	117	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578383	7578383	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	258	529	0	ENST00000269305.4:c.547del	p.Ser183GlnfsTer64	p.S183Qfs*64	ENST00000269305	NM_001126112.2	183	Tca/ca																																																																														
CIC	0	MSKCC	GRCh37	19	42793481	42793481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	279	651	3	ENST00000575354.2:c.1283G>A	p.Arg428His	p.R428H	ENST00000575354	NM_015125.3	428	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112175208	112175208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	111	243	0	ENST00000257430.4:c.3919del	p.Ile1307Ter	p.I1307*	ENST00000257430	NM_000038.5	1306	gAa/ga																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739012	145739012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	77	618	0	ENST00000428558.2:c.2143C>T	p.Arg715Trp	p.R715W	ENST00000428558	NM_004260.3	715	Cgg/Tgg																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	27	668	2	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212208	5212208	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148739536		P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	98	812	0	ENST00000357368.4:c.4823G>A	p.Arg1608Gln	p.R1608Q	ENST00000357368	NM_002850.3	1608	cGg/cAg																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	47	655	2	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	46	450	2	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
PTEN	0	MSKCC	GRCh37	10	89690817	89690819	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	18	526	0	ENST00000371953.3:c.226_228del	p.Tyr76del	p.Y76del	ENST00000371953	NM_000314.4	75	cATTat/cat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827732	72827732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	39	645	2	ENST00000268489.5:c.8849G>A	p.Arg2950His	p.R2950H	ENST00000268489	NM_006885.3	2950	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	35	494	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																														
MYC	0	MSKCC	GRCh37	8	128753187	128753187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	24	342	1	ENST00000377970.2:c.1348C>T	p.Arg450Trp	p.R450W	ENST00000377970	NM_002467.4	450	Cgg/Tgg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054978	176054978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	53	825	1	ENST00000367669.3:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000367669	NM_022457.5	359	Cga/Tga																																																																														
SPEN	0	MSKCC	GRCh37	1	16256321	16256321	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	34	737	0	ENST00000375759.3:c.3591del	p.Asp1198MetfsTer2	p.D1198Mfs*2	ENST00000375759	NM_015001.2	1196	Aaa/aa																																																																														
RAD51B	0	MSKCC	GRCh37	14	68290283	68290283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	33	681	0	ENST00000487270.1:c.23G>A	p.Arg8Gln	p.R8Q	ENST00000487270	NM_133509.3	8	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	107	840	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228979	36228979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	27	905	0	ENST00000222270.7:c.7759C>T	p.Arg2587Ter	p.R2587*	ENST00000222270	NM_014727.1	2587	Cga/Tga																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856595	111856595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	23	205	1	ENST00000341259.2:c.646C>T	p.Arg216Cys	p.R216C	ENST00000341259	NM_005475.2	216	Cgc/Tgc																																																																														
CTCF	0	MSKCC	GRCh37	16	67654616	67654616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	51	720	0	ENST00000264010.4:c.1103G>A	p.Arg368His	p.R368H	ENST00000264010	NM_006565.3	368	cGt/cAt																																																																														
SPEN	0	MSKCC	GRCh37	1	16265331	16265331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	30	812	1	ENST00000375759.3:c.10823C>T	p.Ala3608Val	p.A3608V	ENST00000375759	NM_015001.2	3608	gCg/gTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106025	27106025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	50	541	0	ENST00000324856.7:c.5636G>A	p.Arg1879Gln	p.R1879Q	ENST00000324856	NM_006015.4	1879	cGg/cAg																																																																														
GATA3	0	MSKCC	GRCh37	10	8100591	8100591	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	43	752	0	ENST00000346208.3:c.568del	p.Leu190CysfsTer5	p.L190Cfs*5	ENST00000346208		189	Ccc/cc																																																																														
WT1	0	MSKCC	GRCh37	11	32417801	32417801	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	20	502	1	ENST00000332351.3:c.1249+2T>A		p.X417_splice	ENST00000332351	NM_024426.4	417																																																																															
ETV6	0	MSKCC	GRCh37	12	12022454	12022454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	133	966	0	ENST00000396373.4:c.560C>T	p.Thr187Met	p.T187M	ENST00000396373	NM_001987.4	187	aCg/aTg																																																																														
POLE	0	MSKCC	GRCh37	12	133218405	133218405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	94	946	6	ENST00000320574.5:c.5206G>A	p.Val1736Ile	p.V1736I	ENST00000320574	NM_006231.2	1736	Gtc/Atc																																																																														
SLX4	0	MSKCC	GRCh37	16	3634827	3634827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	64	946	2	ENST00000294008.3:c.4682C>T	p.Thr1561Met	p.T1561M	ENST00000294008	NM_032444.2	1561	aCg/aTg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78933944	78933944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	74	896	3	ENST00000306801.3:c.3544G>A	p.Val1182Met	p.V1182M	ENST00000306801	NM_020761.2	1182	Gtg/Atg																																																																														
POLD1	0	MSKCC	GRCh37	19	50912867	50912867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	51	1006	0	ENST00000440232.2:c.2098G>A	p.Val700Ile	p.V700I	ENST00000440232	NM_002691.3	700	Gta/Ata																																																																														
RYBP	0	MSKCC	GRCh37	3	72427720	72427720	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	60	467	0	ENST00000477973.2:c.768T>G	p.Val257Gly	p.V257G	ENST00000477973	NM_012234.5	257	gTc/gGc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138417822	138417822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	28	659	1	ENST00000289153.2:c.1697G>A	p.Arg566Gln	p.R566Q	ENST00000289153	NM_006219.2	566	cGa/cAa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879277	151879277	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	25	607	2	ENST00000262189.6:c.5668C>T	p.Arg1890Ter	p.R1890*	ENST00000262189	NM_170606.2	1890	Cga/Tga																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	59	1056	3	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139405602	139405602	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	46	922	0	ENST00000277541.6:c.2587+2T>C		p.X863_splice	ENST00000277541	NM_017617.3	863																																																																															
BCOR	0	MSKCC	GRCh37	X	39922270	39922270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	28	243	0	ENST00000378444.4:c.3902C>T	p.Ala1301Val	p.A1301V	ENST00000378444	NM_001123385.1	1301	gCa/gTa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53228288	53228288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	21	408	0	ENST00000375401.3:c.2114G>A	p.Arg705His	p.R705H	ENST00000375401	NM_004187.3	705	cGc/cAc																																																																														
IRS2	0	MSKCC	GRCh37	13	110437115	110437115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	83	103	0	ENST00000375856.3:c.1286G>T	p.Arg429Leu	p.R429L	ENST00000375856	NM_003749.2	429	cGc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	316	624	0	ENST00000269305.4:c.80delC	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584754	48584754	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	142	536	0	ENST00000342988.3:c.833del	p.Pro278LeufsTer58	p.P278Lfs*58	ENST00000342988	NM_005359.5	278	Cct/ct																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	46	351	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32185819	32185819	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145916093		P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	314	692	0	ENST00000375023.3:c.1577C>T	p.Ala526Val	p.A526V	ENST00000375023	NM_004557.3	526	gCg/gTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	221	544	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
AMER1	0	MSKCC	GRCh37	X	63412044	63412044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	148	777	0	ENST00000330258.3:c.1123C>T	p.Pro375Ser	p.P375S	ENST00000330258	NM_152424.3	375	Cca/Tca																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	18	656	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	147	553	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
GATA3	0	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	37	542	1	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	150	885	2	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780705	9780705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	106	724	0	ENST00000377346.4:c.1507G>A	p.Val503Ile	p.V503I	ENST00000377346	NM_005026.3	503	Gtc/Atc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061215	38061215	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	155	593	0	ENST00000250448.2:c.774C>G	p.Cys258Trp	p.C258W	ENST00000250448	NM_004496.3	258	tgC/tgG																																																																														
PALB2	0	MSKCC	GRCh37	16	23646192	23646192	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	27	470	0	ENST00000261584.4:c.1675C>T	p.Gln559Ter	p.Q559*	ENST00000261584	NM_024675.3	559	Caa/Taa																																																																														
GATA1	0	MSKCC	GRCh37	X	48651591	48651591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	190	674	0	ENST00000376670.3:c.757C>T	p.Arg253Trp	p.R253W	ENST00000376670	NM_002049.3	253	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	232	652	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	84	316	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792362	33792362	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	291	931	0	ENST00000498907.2:c.959A>T	p.Asp320Val	p.D320V	ENST00000498907	NM_004364.3	320	gAc/gTc																																																																														
DAXX	0	MSKCC	GRCh37	6	33289023	33289023	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	254	542	0	ENST00000374542.5:c.529C>T	p.Gln177Ter	p.Q177*	ENST00000374542	NM_001141970.1	177	Cag/Tag																																																																														
SMO	0	MSKCC	GRCh37	7	128852271	128852271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	258	795	0	ENST00000249373.3:c.2343G>A	p.Met781Ile	p.M781I	ENST00000249373	NM_005631.4	781	atG/atA																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509432	106509432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	48	647	0	ENST00000359195.3:c.1426C>T	p.Arg476Cys	p.R476C	ENST00000359195	NM_002649.2	476	Cgc/Tgc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18656338	18656338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	71	479	0	ENST00000266497.5:c.3017C>T	p.Ala1006Val	p.A1006V	ENST00000266497		1006	gCa/gTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577018	7577023	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTCGC	CCTCGC	-			P-0024539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	271	739	0	ENST00000269305.4:c.915_919+1del		p.X305_splice	ENST00000269305	NM_001126112.2	305																																																																															
RAD51C	0	MSKCC	GRCh37	17	56772345	56772345	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	98	524	0	ENST00000337432.4:c.199G>T	p.Glu67Ter	p.E67*	ENST00000337432	NM_058216.2	67	Gaa/Taa																																																																														
AGO2	0	MSKCC	GRCh37	8	141551409	141551409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	52	629	3	ENST00000220592.5:c.1888C>T	p.Arg630Cys	p.R630C	ENST00000220592	NM_012154.3	630	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	164	1007	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	44	1020	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
APC	0	MSKCC	GRCh37	5	112170683	112170683	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	112	803	0	ENST00000257430.4:c.1779G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tgG/tgA																																																																														
AKT3	0	MSKCC	GRCh37	1	243716227	243716227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	72	867	0	ENST00000263826.5:c.967T>C	p.Tyr323His	p.Y323H	ENST00000263826	NM_005465.4	323	Tat/Cat																																																																														
KRAS	0	MSKCC	GRCh37	12	25368412	25368412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	34	782	0	ENST00000256078.4:c.533C>T	p.Pro178Leu	p.P178L	ENST00000256078	NM_033360.2	178	cCt/cTt																																																																														
TSC2	0	MSKCC	GRCh37	16	2100465	2100465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	102	876	0	ENST00000219476.3:c.203C>T	p.Ala68Val	p.A68V	ENST00000219476	NM_000548.3	68	gCa/gTa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134960137	134960137	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	56	897	0	ENST00000398015.3:c.2494G>T	p.Asp832Tyr	p.D832Y	ENST00000398015	NM_004441.4	832	Gat/Tat																																																																														
AR	0	MSKCC	GRCh37	X	66863204	66863204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	175	458	0	ENST00000374690.3:c.1723C>T	p.Leu575Phe	p.L575F	ENST00000374690	NM_000044.3	575	Ctc/Ttc																																																																														
BTK	0	MSKCC	GRCh37	X	100630193	100630193	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	210	473	0	ENST00000308731.7:c.80A>T	p.Lys27Met	p.K27M	ENST00000308731	NM_000061.2	27	aAg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	46	500	0				ENST00000310581	NM_198253.2																																																																																
CASP8	0	MSKCC	GRCh37	2	202131505	202131505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	103	519	0	ENST00000358485.4:c.473C>T	p.Ser158Phe	p.S158F	ENST00000358485	NM_001080125.1	158	tCt/tTt																																																																														
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0024576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	116	598	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc																																																																														
TP63	0	MSKCC	GRCh37	3	189584501	189584501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	92	486	2	ENST00000264731.3:c.797G>A	p.Arg266Gln	p.R266Q	ENST00000264731	NM_003722.4	266	cGa/cAa																																																																														
CASP8	0	MSKCC	GRCh37	2	202137450	202137450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	83	574	1	ENST00000358485.4:c.678C>G	p.Ile226Met	p.I226M	ENST00000358485	NM_001080125.1	226	atC/atG																																																																														
STAG2	0	MSKCC	GRCh37	X	123211903	123211903	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	72	304	0	ENST00000218089.9:c.2770C>T	p.Gln924Ter	p.Q924*	ENST00000218089	NM_001042749.1	924	Caa/Taa																																																																														
MITF	0	MSKCC	GRCh37	3	69987147	69987147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	47	634	0	ENST00000352241.4:c.529G>A	p.Ala177Thr	p.A177T	ENST00000352241	NM_198159.2	177	Gca/Aca																																																																														
SPEN	0	MSKCC	GRCh37	1	16255049	16255049	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	86	423	0	ENST00000375759.3:c.2314C>G	p.Pro772Ala	p.P772A	ENST00000375759	NM_015001.2	772	Cca/Gca																																																																														
ATM	0	MSKCC	GRCh37	11	108178697	108178697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	99	388	0	ENST00000278616.4:c.5748G>A	p.Met1916Ile	p.M1916I	ENST00000278616	NM_000051.3	1916	atG/atA																																																																														
BARD1	0	MSKCC	GRCh37	2	215645517	215645519	+	frameshift_variant	Frame_Shift_Del	DEL	CAG	CAG	AT			P-0024576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	30	731	3	ENST00000260947.4:c.1079_1081delinsAT	p.Pro360HisfsTer40	p.P360Hfs*40	ENST00000260947	NM_000465.2	360	cCTGaa/cATaa																																																																														
MSH3	0	MSKCC	GRCh37	5	79965929	79965929	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	54	644	0	ENST00000265081.6:c.593T>C	p.Phe198Ser	p.F198S	ENST00000265081	NM_002439.4	198	tTt/tCt																																																																														
JUN	0	MSKCC	GRCh37	1	59248067	59248067	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	31	259	0	ENST00000371222.2:c.676A>T	p.Lys226Ter	p.K226*	ENST00000371222	NM_002228.3	226	Aag/Tag																																																																														
RET	0	MSKCC	GRCh37	10	43607597	43607597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	148	641	0	ENST00000355710.3:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000355710	NM_020975.4	525	Cgg/Tgg																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741684	17741684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	120	401	1	ENST00000250003.3:c.355C>T	p.Arg119Trp	p.R119W	ENST00000250003	NM_002478.4	119	Cgg/Tgg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118362615	118362615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	44	313	0	ENST00000534358.1:c.4976C>T	p.Thr1659Ile	p.T1659I	ENST00000534358	NM_005933.3	1659	aCt/aTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	147	469	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457294	67457294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	139	517	0	ENST00000327367.4:c.268C>T	p.Arg90Cys	p.R90C	ENST00000327367	NM_005902.3	90	Cgc/Tgc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530154	212530154	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	22	362	0	ENST00000342788.4:c.1765T>G	p.Cys589Gly	p.C589G	ENST00000342788	NM_005235.2	589	Tgt/Ggt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143045845	143045845	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	46	369	1	ENST00000262992.4:c.1789C>T	p.Arg597Ter	p.R597*	ENST00000262992	NM_001101669.1	597	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	83	219	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965569	93965569	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	38	361	0	ENST00000369303.4:c.2359C>G	p.Pro787Ala	p.P787A	ENST00000369303	NM_004440.3	787	Cca/Gca																																																																														
ROS1	0	MSKCC	GRCh37	6	117724358	117724358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	146	467	2	ENST00000368508.3:c.521C>T	p.Ala174Val	p.A174V	ENST00000368508	NM_002944.2	174	gCg/gTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412647	63412648	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	103	476	0	ENST00000330258.3:c.519dupT	p.Ser174Ter	p.S174*	ENST00000330258	NM_152424.3	173	-/T																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0024614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	687	516	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	129	597	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc																																																																														
RB1	0	MSKCC	GRCh37	13	49039399	49039399	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	37	728	2	ENST00000267163.4:c.2384C>A	p.Ser795Ter	p.S795*	ENST00000267163	NM_000321.2	795	tCa/tAa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	10	660	4	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
PRKD1	0	MSKCC	GRCh37	14	30066796	30066796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201010570		P-0024637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	33	585	0	ENST00000331968.5:c.2335G>A	p.Gly779Ser	p.G779S	ENST00000331968	NM_002742.2	779	Ggc/Agc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	156	478	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0024647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	31	948	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
GATA3	0	MSKCC	GRCh37	10	8115710	8115711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	94	445	0	ENST00000346208.3:c.1060dupC	p.Leu354ProfsTer17	p.L354Pfs*17	ENST00000346208		352	-/C																																																																														
CBFB	0	MSKCC	GRCh37	16	67070605	67070605	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024647-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	83	390	0	ENST00000412916.2:c.229C>T	p.Gln77Ter	p.Q77*	ENST00000412916		77	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	336	904	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	134	338	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	539	818	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	299	909	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	212	584	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																																																														
GATA3	0	MSKCC	GRCh37	10	8100324	8100324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	181	955	0	ENST00000346208.3:c.298G>A	p.Gly100Ser	p.G100S	ENST00000346208		100	Ggc/Agc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	242	834	18	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	270	809	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
NSD1	0	MSKCC	GRCh37	5	176721436	176721436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	297	675	1	ENST00000439151.2:c.7067C>T	p.Thr2356Met	p.T2356M	ENST00000439151	NM_022455.4	2356	aCg/aTg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78796926	78796926	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	278	683	0	ENST00000306801.3:c.1039T>C	p.Phe347Leu	p.F347L	ENST00000306801	NM_020761.2	347	Ttt/Ctt																																																																														
ASXL2	0	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	262	732	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	94	407	3	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
PARK2	0	MSKCC	GRCh37	6	162394349	162394349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	203	548	0	ENST00000366898.1:c.719C>T	p.Thr240Met	p.T240M	ENST00000366898	NM_004562.2	240	aCg/aTg																																																																														
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	139	400	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803183	1803183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	373	1003	1	ENST00000260795.2:c.535G>A	p.Ala179Thr	p.A179T	ENST00000260795		179	Gct/Act																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	134	424	0	ENST00000307078.5:c.1214_1215delAG	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	300	942	0	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																														
RAD51D	0	MSKCC	GRCh37	17	33428299	33428299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	262	732	3	ENST00000335858.7:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000335858	NM_133629.2	163	cGg/cAg																																																																														
CARD11	0	MSKCC	GRCh37	7	2976706	2976706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	281	813	1	ENST00000396946.4:c.1306C>T	p.Arg436Trp	p.R436W	ENST00000396946	NM_032415.4	436	Cgg/Tgg																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257366	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	280	917	4	ENST00000162023.5:c.767delC	p.Pro256GlnfsTer?	p.P256Qfs*?	ENST00000162023		256	cCa/ca																																																																														
CD274	0	MSKCC	GRCh37	9	5465595	5465595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148141792		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	134	405	2	ENST00000381577.3:c.779G>A	p.Arg260His	p.R260H	ENST00000381577	NM_014143.3	260	cGt/cAt																																																																														
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	339	1118	4	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																																																														
POLE	0	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	85	907	1	ENST00000320574.5:c.6088delG	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149497358	149497358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35731372		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	289	747	0	ENST00000261799.4:c.2960G>A	p.Arg987Gln	p.R987Q	ENST00000261799	NM_002609.3	987	cGg/cAg																																																																														
TCF3	0	MSKCC	GRCh37	19	1615698	1615698	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	424	1119	2	ENST00000344749.5:c.1573delC	p.Arg525GlyfsTer18	p.R525Gfs*18	ENST00000344749	NM_001136139.2	525	Cgg/gg																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111907653	111907653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	208	451	1	ENST00000393256.3:c.427C>T	p.Arg143Cys	p.R143C	ENST00000393256	NM_006538.4	143	Cgc/Tgc																																																																														
U2AF1	0	MSKCC	GRCh37	21	44513268	44513268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	311	787	1	ENST00000291552.4:c.667G>A	p.Gly223Arg	p.G223R	ENST00000291552	NM_006758.2	223	Gga/Aga																																																																														
NSD1	0	MSKCC	GRCh37	5	176722149	176722149	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146010779		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	35	661	1	ENST00000439151.2:c.7780G>A	p.Ala2594Thr	p.A2594T	ENST00000439151	NM_022455.4	2594	Gcc/Acc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153245501	153245501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1024060344		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	218	623	0	ENST00000281708.4:c.1690C>T	p.Arg564Cys	p.R564C	ENST00000281708	NM_033632.3	564	Cgt/Tgt																																																																														
MSH6	2956	MSKCC	GRCh37	2	48025857	48025857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1472949451		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	145	407	1	ENST00000234420.5:c.741del	p.Lys247AsnfsTer32	p.K247Nfs*32	ENST00000234420	NM_000179.2	245	atA/at																																																																														
INSR	0	MSKCC	GRCh37	19	7132271	7132271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	56	716	1	ENST00000302850.5:c.2740C>T	p.Arg914Cys	p.R914C	ENST00000302850	NM_000208.2	914	Cgt/Tgt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210417	2210417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	263	789	0	ENST00000398665.3:c.1024C>T	p.Arg342Trp	p.R342W	ENST00000398665	NM_032482.2	342	Cgg/Tgg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589576	67589576	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1289537429		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	104	402	0	ENST00000274335.5:c.1344del	p.Lys448AsnfsTer32	p.K448Nfs*32	ENST00000274335		447	Aaa/aa																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	718	1111	2	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445500	49445500	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1066	131	980	1	ENST00000301067.7:c.1966delC	p.Leu656CysfsTer274	p.L656Cfs*274	ENST00000301067	NM_003482.3	656	Ctg/tg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368253	45368253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	443	668	0	ENST00000262160.6:c.1349A>G	p.Asp450Gly	p.D450G	ENST00000262160	NM_005901.5	450	gAc/gGc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948208	71948209	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	314	1128	2	ENST00000298229.2:c.2927dupC	p.Pro977ThrfsTer7	p.P977Tfs*7	ENST00000298229	NM_001567.3	974	gcc/gCcc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81953258	81953258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	79	360	1	ENST00000359376.3:c.2224C>T	p.Arg742Cys	p.R742C	ENST00000359376	NM_002661.3	742	Cgc/Tgc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873105	134873105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	228	698	0	ENST00000398015.3:c.1409G>A	p.Arg470Gln	p.R470Q	ENST00000398015	NM_004441.4	470	cGg/cAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444377	49444377	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	280	724	1	ENST00000301067.7:c.2994delT	p.Met999Ter	p.M999*	ENST00000301067	NM_003482.3	998	ccT/cc																																																																														
RET	0	MSKCC	GRCh37	10	43619163	43619163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	252	755	1	ENST00000355710.3:c.2846G>A	p.Gly949Glu	p.G949E	ENST00000355710	NM_020975.4	949	gGa/gAa																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	276	815	2	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210893	36210893	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	319	908	2	ENST00000222270.7:c.649del	p.Arg217GlyfsTer22	p.R217Gfs*22	ENST00000222270	NM_014727.1	215	aCc/ac																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274710	123274710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	253	753	1	ENST00000358487.5:c.1208C>T	p.Thr403Met	p.T403M	ENST00000358487	NM_000141.4	403	aCg/aTg																																																																														
JAK1	0	MSKCC	GRCh37	1	65307173	65307173	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs181919006		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	214	646	0	ENST00000342505.4:c.2515C>T	p.Arg839Ter	p.R839*	ENST00000342505	NM_002227.2	839	Cga/Tga																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041668	14041668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	228	562	1	ENST00000311895.7:c.2215G>A	p.Gly739Ser	p.G739S	ENST00000311895	NM_005236.2	739	Ggc/Agc																																																																														
CBL	0	MSKCC	GRCh37	11	119167717	119167717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	272	709	1	ENST00000264033.4:c.2126G>A	p.Arg709Gln	p.R709Q	ENST00000264033	NM_005188.3	709	cGg/cAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023034	27023034	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	28	129	0	ENST00000324856.7:c.140G>C	p.Arg47Pro	p.R47P	ENST00000324856	NM_006015.4	47	cGc/cCc																																																																														
MPL	0	MSKCC	GRCh37	1	43805098	43805098	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137952228		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	288	823	2	ENST00000372470.3:c.548C>T	p.Thr183Met	p.T183M	ENST00000372470	NM_005373.2	183	aCg/aTg																																																																														
RET	0	MSKCC	GRCh37	10	43619190	43619190	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	244	731	0	ENST00000355710.3:c.2873A>C	p.Glu958Ala	p.E958A	ENST00000355710	NM_020975.4	958	gAg/gCg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197341	94197341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	302	804	0	ENST00000323929.3:c.1163G>A	p.Arg388Gln	p.R388Q	ENST00000323929	NM_005591.3	388	cGg/cAg																																																																														
ATM	0	MSKCC	GRCh37	11	108172463	108172463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	191	592	0	ENST00000278616.4:c.5266A>G	p.Thr1756Ala	p.T1756A	ENST00000278616	NM_000051.3	1756	Aca/Gca																																																																														
KMT2A	0	MSKCC	GRCh37	11	118362638	118362638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	202	488	0	ENST00000534358.1:c.4999C>T	p.Arg1667Trp	p.R1667W	ENST00000534358	NM_005933.3	1667	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424138	49424138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200638996		P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	394	912	2	ENST00000301067.7:c.13924G>A	p.Val4642Ile	p.V4642I	ENST00000301067	NM_003482.3	4642	Gtc/Atc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433394	49433394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	53	957	0	ENST00000301067.7:c.8053C>T	p.Arg2685Ter	p.R2685*	ENST00000301067	NM_003482.3	2685	Cga/Tga																																																																														
PRKD1	0	MSKCC	GRCh37	14	30103628	30103628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	265	713	0	ENST00000331968.5:c.1310C>T	p.Thr437Met	p.T437M	ENST00000331968	NM_002742.2	437	aCg/aTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031880	10031880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	280	844	1	ENST00000330684.3:c.943G>A	p.Glu315Lys	p.E315K	ENST00000330684	NM_001134407.1	315	Gag/Aag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351703	89351703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	329	1017	2	ENST00000301030.4:c.1247C>T	p.Ala416Val	p.A416V	ENST00000301030	NM_001256183.1	416	gCg/gTg																																																																														
RNF43	0	MSKCC	GRCh37	17	56435956	56435956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	71	512	0	ENST00000407977.2:c.1181C>T	p.Ala394Val	p.A394V	ENST00000407977		394	gCa/gTa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11107209	11107209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	148	752	0	ENST00000344626.4:c.1801C>T	p.Pro601Ser	p.P601S	ENST00000344626	NM_003072.3	601	Ccg/Tcg																																																																														
BABAM1	0	MSKCC	GRCh37	19	17379649	17379651	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	147	504	6	ENST00000359435.4:c.45_47del	p.Glu18del	p.E18del	ENST00000359435	NM_001033549.1	12	GAG/-																																																																														
MEF2B	0	MSKCC	GRCh37	19	19260206	19260206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	381	972	1	ENST00000162023.5:c.87G>T	p.Met29Ile	p.M29I	ENST00000162023		29	atG/atT																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52724289	52724289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	272	653	0	ENST00000322088.6:c.1421G>A	p.Gly474Glu	p.G474E	ENST00000322088	NM_014225.5	474	gGg/gAg																																																																														
ALK	0	MSKCC	GRCh37	2	29432680	29432680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	40	750	1	ENST00000389048.3:c.3808G>A	p.Asp1270Asn	p.D1270N	ENST00000389048	NM_004304.4	1270	Gac/Aac																																																																														
PAK7	0	MSKCC	GRCh37	20	9561222	9561222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	45	634	0	ENST00000353224.5:c.560C>T	p.Pro187Leu	p.P187L	ENST00000353224	NM_177990.2	187	cCt/cTt																																																																														
SRC	0	MSKCC	GRCh37	20	36031742	36031742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	348	840	0	ENST00000358208.4:c.1571C>T	p.Thr524Met	p.T524M	ENST00000358208		524	aCg/aTg																																																																														
EP300	0	MSKCC	GRCh37	22	41546129	41546129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	181	509	1	ENST00000263253.7:c.2744G>A	p.Arg915His	p.R915H	ENST00000263253	NM_001429.3	915	cGc/cAc																																																																														
EP300	0	MSKCC	GRCh37	22	41558730	41558733	+	frameshift_variant	Frame_Shift_Del	DEL	AATA	AATA	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	208	603	1	ENST00000263253.7:c.3681_3684del	p.Asn1227LysfsTer49	p.N1227Kfs*49	ENST00000263253	NM_001429.3	1225	acAATA/ac																																																																														
EP300	0	MSKCC	GRCh37	22	41574029	41574029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	226	625	0	ENST00000263253.7:c.6314G>A	p.Gly2105Asp	p.G2105D	ENST00000263253	NM_001429.3	2105	gGc/gAc																																																																														
VHL	0	MSKCC	GRCh37	3	10188239	10188239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	305	874	1	ENST00000256474.2:c.382C>T	p.Leu128Phe	p.L128F	ENST00000256474	NM_000551.3	128	Ctt/Ttt																																																																														
TET2	0	MSKCC	GRCh37	4	106180849	106180849	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	167	477	0	ENST00000380013.4:c.3877A>C	p.Met1293Leu	p.M1293L	ENST00000380013	NM_001127208.2	1293	Atg/Ctg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111581	56111581	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	120	215	1	ENST00000399503.3:c.181C>T	p.Gln61Ter	p.Q61*	ENST00000399503	NM_005921.1	61	Cag/Tag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178071	56178071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	161	465	0	ENST00000399503.3:c.3044C>A	p.Pro1015His	p.P1015H	ENST00000399503	NM_005921.1	1015	cCt/cAt																																																																														
DAXX	0	MSKCC	GRCh37	6	33288600	33288600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	188	489	0	ENST00000374542.5:c.952C>G	p.Arg318Gly	p.R318G	ENST00000374542	NM_001141970.1	318	Cga/Gga																																																																														
KLF4	9314	MSKCC	GRCh37	9	110249387	110249387	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1183	379	1163	0	ENST00000374672.4:c.1186del	p.His396ThrfsTer48	p.H396Tfs*48	ENST00000374672	NM_004235.4	396	Cac/ac																																																																														
B2M	0	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0024663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	29	549	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																														
PARK2	0	MSKCC	GRCh37	6	162622179	162622179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	70	487	0	ENST00000366898.1:c.518C>T	p.Thr173Met	p.T173M	ENST00000366898	NM_004562.2	173	aCg/aTg																																																																														
RB1	0	MSKCC	GRCh37	13	48881414	48881414	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0024663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	30	210	0	ENST00000267163.4:c.138-2A>G		p.X46_splice	ENST00000267163	NM_000321.2	46																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11144122	11144122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	51	974	2	ENST00000344626.4:c.3703G>T	p.Asp1235Tyr	p.D1235Y	ENST00000344626	NM_003072.3	1235	Gac/Tac																																																																														
AKT3	0	MSKCC	GRCh37	1	243675647	243675647	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	45	611	0	ENST00000263826.5:c.1333A>C	p.Thr445Pro	p.T445P	ENST00000263826	NM_005465.4	445	Aca/Cca																																																																														
ATM	0	MSKCC	GRCh37	11	108121799	108121799	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0024663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	37	468	0	ENST00000278616.4:c.1607G>T	p.Cys536Phe	p.C536F	ENST00000278616	NM_000051.3	536	tGt/tTt																																																																														
RB1	0	MSKCC	GRCh37	13	48954220	48954220	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0024663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	47	487	0	ENST00000267163.4:c.1421G>T	p.Ser474Ile	p.S474I	ENST00000267163	NM_000321.2	474	aGc/aTc																																																																														
DICER1	0	MSKCC	GRCh37	14	95562725	95562725	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	23	495	0	ENST00000343455.3:c.4532A>G	p.Tyr1511Cys	p.Y1511C	ENST00000343455	NM_177438.2	1511	tAt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578396	7578397	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0024663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	85	731	0	ENST00000269305.4:c.533_534del	p.His178ProfsTer2	p.H178Pfs*2	ENST00000269305	NM_001126112.2	178	cAC/c																																																																														
CXCR4	0	MSKCC	GRCh37	2	136873196	136873196	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	61	397	0	ENST00000241393.3:c.302A>G	p.Asn101Ser	p.N101S	ENST00000241393	NM_003467.2	101	aAc/aGc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41275153	41275153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	21	502	0	ENST00000349496.5:c.1319A>G	p.Gln440Arg	p.Q440R	ENST00000349496	NM_001904.3	440	cAa/cGa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589009	67589023	+	protein_altering_variant	In_Frame_Del	DEL	ATTATACTCTTACAC	ATTATACTCTTACAC	GTG			P-0024663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	47	375	1	ENST00000274335.5:c.1100_1114delinsGTG	p.Asp367_Leu372delinsGlyVal	p.D367_L372delinsGV	ENST00000274335		367	gATTATACTCTTACACta/gGTGta																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106573	27106573	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AT			P-0024663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	91	938	0	ENST00000324856.7:c.6184delinsAT	p.Val2062IlefsTer37	p.V2062Ifs*37	ENST00000324856	NM_006015.4	2062	Gtt/ATtt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	26	426	0	ENST00000288602.6:c.1803A>T	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaT																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	89	593	0	ENST00000397062.3:c.246A>C	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaC																																																																														
CHEK1	0	MSKCC	GRCh37	11	125503187	125503187	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	36	334	0	ENST00000428830.2:c.554A>T	p.His185Leu	p.H185L	ENST00000428830	NM_001114121.2	185	cAt/cTt																																																																														
NF1	0	MSKCC	GRCh37	17	29562721	29562721	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	51	477	0	ENST00000358273.4:c.3802del	p.Ala1268GlnfsTer17	p.A1268Qfs*17	ENST00000358273	NM_001042492.2	1267	ttG/tt																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	155	814	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118348763	118348763	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	51	422	0	ENST00000534358.1:c.3416A>G	p.Lys1139Arg	p.K1139R	ENST00000534358	NM_005933.3	1139	aAg/aGg																																																																														
LATS2	0	MSKCC	GRCh37	13	21557844	21557844	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	142	775	0	ENST00000382592.4:c.2001G>C	p.Met667Ile	p.M667I	ENST00000382592	NM_014572.2	667	atG/atC																																																																														
NF1	0	MSKCC	GRCh37	17	29657475	29657508	+	frameshift_variant	Frame_Shift_Del	DEL	TAGAATTTTTGGAAGAGTGTATTTCTGGATTTAG	TAGAATTTTTGGAAGAGTGTATTTCTGGATTTAG	-			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	209	568	0	ENST00000358273.4:c.5771_5804del	p.Leu1924SerfsTer7	p.L1924Sfs*7	ENST00000358273	NM_001042492.2	1924	tTAGAATTTTTGGAAGAGTGTATTTCTGGATTTAGc/tc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151893052	151893085	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTTAAAACTTCAGAAATATCAGCTAATGGGTC	TGTTTAAAACTTCAGAAATATCAGCTAATGGGTC	-			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	41	631	0	ENST00000262189.6:c.4285_4318del	p.Asp1429GlnfsTer8	p.D1429Qfs*8	ENST00000262189	NM_170606.2	1429	GACCCATTAGCTGATATTTCTGAAGTTTTAAACAca/ca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8486128	8486155	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAGAGCCTGAAGACGTATGATGCTCC	CTGAGAGCCTGAAGACGTATGATGCTCC	-			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	63	504	0	ENST00000356435.5:c.2662_2689del	p.Gly888ProfsTer12	p.G888Pfs*12	ENST00000356435		888	GGAGCATCATACGTCTTCAGGCTCTCAGcc/cc																																																																														
BCOR	0	MSKCC	GRCh37	X	39930282	39930282	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	82	781	1	ENST00000378444.4:c.3182A>T	p.Lys1061Met	p.K1061M	ENST00000378444	NM_001123385.1	1061	aAg/aTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271883	15271896	+	frameshift_variant	Frame_Shift_Del	DEL	GGAACGAGGGGCCT	GGAACGAGGGGCCT	-			P-0024721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	87	651	0	ENST00000263388.2:c.6543_6556del	p.Gly2182AlafsTer55	p.G2182Afs*55	ENST00000263388	NM_000435.2	2181	ccAGGCCCCTCGTTCCtg/cctg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	49	666	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	70	496	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																														
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	99	438	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	24	442	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																														
ATM	0	MSKCC	GRCh37	11	108150217	108150217	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	16	414	1	ENST00000278616.4:c.3285-1G>T		p.X1095_splice	ENST00000278616	NM_000051.3	1095																																																																															
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	104	548	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	257	605	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
MSH2	0	MSKCC	GRCh37	2	47656969	47656969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	73	409	1	ENST00000233146.2:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000233146	NM_000251.2	389	Cga/Tga																																																																														
FUBP1	0	MSKCC	GRCh37	1	78425869	78425869	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	38	374	0	ENST00000370768.2:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000370768	NM_003902.3	526	Gct/Act																																																																														
ERCC5	0	MSKCC	GRCh37	13	103528119	103528119	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55798001		P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	33	361	0	ENST00000355739.4:c.3427G>A	p.Ala1143Thr	p.A1143T	ENST00000355739	NM_000123.3	1143	Gcg/Acg																																																																														
MGA	0	MSKCC	GRCh37	15	41962101	41962101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	101	416	0	ENST00000219905.7:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000219905	NM_001164273.1	337	Gat/Aat																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212170	5212170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	114	623	0	ENST00000357368.4:c.4861G>T	p.Val1621Leu	p.V1621L	ENST00000357368	NM_002850.3	1621	Gtg/Ttg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15299124	15299124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	155	563	0	ENST00000263388.2:c.1414G>C	p.Glu472Gln	p.E472Q	ENST00000263388	NM_000435.2	472	Gag/Cag																																																																														
UPF1	0	MSKCC	GRCh37	19	18971733	18971733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	102	529	1	ENST00000262803.5:c.2399G>T	p.Arg800Leu	p.R800L	ENST00000262803	NM_002911.3	800	cGc/cTc																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89391150	89391150	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	91	455	1	ENST00000336596.2:c.1216A>T	p.Thr406Ser	p.T406S	ENST00000336596	NM_005233.5	406	Acc/Tcc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66270140	66270140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	162	415	0	ENST00000273854.3:c.1742T>C	p.Val581Ala	p.V581A	ENST00000273854	NM_004439.5	581	gTg/gCg																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553742	106553742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	52	442	1	ENST00000369096.4:c.1707G>T	p.Gln569His	p.Q569H	ENST00000369096	NM_001198.3	569	caG/caT																																																																														
HGF	0	MSKCC	GRCh37	7	81372722	81372722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	73	419	0	ENST00000222390.5:c.812G>A	p.Cys271Tyr	p.C271Y	ENST00000222390	NM_000601.4	271	tGc/tAc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396497	139396497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	86	608	0	ENST00000277541.6:c.5428C>T	p.Gln1810Ter	p.Q1810*	ENST00000277541	NM_017617.3	1810	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	108	567	3	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
SYK	0	MSKCC	GRCh37	9	93606262	93606262	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	121	503	0	ENST00000375746.1:c.82T>G	p.Tyr28Asp	p.Y28D	ENST00000375746	NM_001174167.1	28	Tac/Gac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	34	815	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31405819	31405819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024774-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	32	418	1	ENST00000344624.3:c.3959C>T	p.Ala1320Val	p.A1320V	ENST00000344624		1320	gCg/gTg																																																																														
FGF3	0	MSKCC	GRCh37	11	69625164	69625164	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115452181		P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	97	330	0	ENST00000334134.2:c.629G>A	p.Arg210Gln	p.R210Q	ENST00000334134	NM_005247.2	210	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	177	477	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	253	349	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11168978	11168978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	128	388	0	ENST00000344626.4:c.4472G>T	p.Arg1491Leu	p.R1491L	ENST00000344626	NM_003072.3	1491	cGa/cTa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15284906	15284906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	346	439	0	ENST00000263388.2:c.4709G>A	p.Arg1570His	p.R1570H	ENST00000263388	NM_000435.2	1570	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112174787	112174788	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	156	222	0	ENST00000257430.4:c.3497dup	p.Tyr1166Ter	p.Y1166*	ENST00000257430	NM_000038.5	1166	tat/tAat																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133322	38133322	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	1095	356	0	ENST00000317025.8:c.4151C>G	p.Ser1384Ter	p.S1384*	ENST00000317025	NM_023034.1	1384	tCa/tGa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133950	38133950	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	2825	558	0	ENST00000317025.8:c.3936C>G	p.Ile1312Met	p.I1312M	ENST00000317025	NM_023034.1	1312	atC/atG																																																																														
PRDM14	0	MSKCC	GRCh37	8	70970924	70970924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	392	451	0	ENST00000276594.2:c.1337G>A	p.Arg446Gln	p.R446Q	ENST00000276594	NM_024504.3	446	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	57	656	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31374389	31374389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	94	569	0	ENST00000328111.2:c.388C>T	p.Arg130Cys	p.R130C	ENST00000328111	NM_006892.3	130	Cgc/Tgc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71936201	71936201	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	85	373	0	ENST00000298229.2:c.173T>C	p.Leu58Pro	p.L58P	ENST00000298229	NM_001567.3	58	cTc/cCc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965421	25965421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	85	689	0	ENST00000435504.4:c.3785C>G	p.Ala1262Gly	p.A1262G	ENST00000435504		1262	gCc/gGc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248725	212248725	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	51	345	0	ENST00000342788.4:c.3542A>G	p.Gln1181Arg	p.Q1181R	ENST00000342788	NM_005235.2	1181	cAa/cGa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	26	323	0	ENST00000281708.4:c.1634A>T	p.Tyr545Phe	p.Y545F	ENST00000281708	NM_033632.3	545	tAt/tTt																																																																														
APC	0	MSKCC	GRCh37	5	112174252	112174252	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	46	409	0	ENST00000257430.4:c.2961del	p.Glu988LysfsTer17	p.E988Kfs*17	ENST00000257430	NM_000038.5	987	tcT/tc																																																																														
APC	0	MSKCC	GRCh37	5	112175087	112175087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	36	279	0	ENST00000257430.4:c.3796G>A	p.Asp1266Asn	p.D1266N	ENST00000257430	NM_000038.5	1266	Gat/Aat																																																																														
APC	0	MSKCC	GRCh37	5	112175540	112175541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	21	280	0	ENST00000257430.4:c.4250_4251dup	p.Ile1418LeufsTer2	p.I1418Lfs*2	ENST00000257430	NM_000038.5	1417	att/aTTtt																																																																														
SOX17	0	MSKCC	GRCh37	8	55372264	55372264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	81	552	0	ENST00000297316.4:c.954G>T	p.Gln318His	p.Q318H	ENST00000297316	NM_022454.3	318	caG/caT																																																																														
PAX5	0	MSKCC	GRCh37	9	37006485	37006485	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	35	372	0	ENST00000358127.4:c.460T>G	p.Ser154Ala	p.S154A	ENST00000358127	NM_001280556.1	154	Tcc/Gcc																																																																														
MTOR	0	MSKCC	GRCh37	1	11199655	11199655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	336	427	0	ENST00000361445.4:c.4933A>G	p.Ser1645Gly	p.S1645G	ENST00000361445	NM_004958.3	1645	Agc/Ggc																																																																														
TP53	0	MSKCC	GRCh37	17	7579340	7579340	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	708	494	0	ENST00000269305.4:c.347del	p.Ser116LeufsTer7	p.S116Lfs*7	ENST00000269305	NM_001126112.2	116	tCt/tt																																																																														
FAT1	0	MSKCC	GRCh37	4	187629816	187629816	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	73	509	1	ENST00000441802.2:c.1166T>C	p.Val389Ala	p.V389A	ENST00000441802	NM_005245.3	389	gTa/gCa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	92	488	3				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	181	327	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	120	823	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	389	717	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188995	32188995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	151	733	2	ENST00000375023.3:c.559G>A	p.Glu187Lys	p.E187K	ENST00000375023	NM_004557.3	187	Gag/Aag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221729	36221729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	145	795	0	ENST00000222270.7:c.5398G>T	p.Glu1800Ter	p.E1800*	ENST00000222270	NM_014727.1	1800	Gag/Tag																																																																														
SOX2	0	MSKCC	GRCh37	3	181430515	181430515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	90	658	0	ENST00000325404.1:c.367G>C	p.Asp123His	p.D123H	ENST00000325404	NM_003106.3	123	Gat/Cat																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56183318	56183330	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGGGACAATTG	CTGGGGACAATTG	-			P-0024855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	187	459	0	ENST00000399503.3:c.4229_4241del	p.Leu1410HisfsTer8	p.L1410Hfs*8	ENST00000399503	NM_005921.1	1410	CTGGGGACAATTGca/ca																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	115	377	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
MPL	0	MSKCC	GRCh37	1	43814532	43814532	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	66	193	0	ENST00000372470.3:c.1330del	p.Ala444ProfsTer52	p.A444Pfs*52	ENST00000372470	NM_005373.2	443	Ggg/gg																																																																														
FLT1	0	MSKCC	GRCh37	13	28908183	28908183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	126	338	0	ENST00000282397.4:c.2572G>T	p.Val858Leu	p.V858L	ENST00000282397	NM_002019.4	858	Gtg/Ttg																																																																														
FLT1	0	MSKCC	GRCh37	13	29005287	29005287	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	110	324	0	ENST00000282397.4:c.974C>A	p.Ser325Ter	p.S325*	ENST00000282397	NM_002019.4	325	tCa/tAa																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502250	186502250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	65	181	1	ENST00000323963.5:c.59C>T	p.Pro20Leu	p.P20L	ENST00000323963		20	cCc/cTc																																																																														
SETD2	0	MSKCC	GRCh37	3	47161984	47161984	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	31	333	0	ENST00000409792.3:c.4142del	p.Leu1381Ter	p.L1381*	ENST00000409792	NM_014159.6	1381	tTa/ta																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468318	50468318	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	25	287	0	ENST00000331340.3:c.1553T>C	p.Met518Thr	p.M518T	ENST00000331340	NM_006060.4	518	aTg/aCg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0024932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	128	445	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	93	561	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
RECQL4	0	MSKCC	GRCh37	8	145743003	145743003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	66	216	0	ENST00000428558.2:c.101C>T	p.Ala34Val	p.A34V	ENST00000428558	NM_004260.3	34	gCg/gTg																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271393	26271393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	52	499	0	ENST00000305910.3:c.220G>A	p.Glu74Lys	p.E74K	ENST00000305910	NM_003534.2	74	Gaa/Aaa																																																																														
AKT1	0	MSKCC	GRCh37	14	105258937	105258937	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0024932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	44	733	0	ENST00000349310.3:c.44G>C	p.Arg15Pro	p.R15P	ENST00000349310	NM_001014432.1	15	cGa/cCa																																																																														
MDC1	0	MSKCC	GRCh37	6	30673761	30673761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	85	395	0	ENST00000376406.3:c.3199C>G	p.Leu1067Val	p.L1067V	ENST00000376406	NM_014641.2	1067	Ctt/Gtt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	84	604	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
HGF	0	MSKCC	GRCh37	7	81355283	81355283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	49	381	0	ENST00000222390.5:c.1091G>T	p.Trp364Leu	p.W364L	ENST00000222390	NM_000601.4	364	tGg/tTg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274723	123274723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	88	495	1	ENST00000358487.5:c.1195C>T	p.Arg399Ter	p.R399*	ENST00000358487	NM_000141.4	399	Cga/Tga																																																																														
ATM	0	MSKCC	GRCh37	11	108164163	108164164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	86	370	0	ENST00000278616.4:c.4741dupA	p.Ile1581AsnfsTer5	p.I1581Nfs*5	ENST00000278616	NM_000051.3	1579	caa/cAaa																																																																														
GATA1	0	MSKCC	GRCh37	X	48649605	48649605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	18	673	0	ENST00000376670.3:c.89C>T	p.Ser30Leu	p.S30L	ENST00000376670	NM_002049.3	30	tCa/tTa																																																																														
NTRK1	0	MSKCC	GRCh37	1	156848936	156848936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	180	568	0	ENST00000524377.1:c.1828C>A	p.Leu610Met	p.L610M	ENST00000524377	NM_002529.3	610	Ctg/Atg																																																																														
TET1	0	MSKCC	GRCh37	10	70432717	70432717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	95	616	1	ENST00000373644.4:c.4739C>T	p.Ser1580Leu	p.S1580L	ENST00000373644	NM_030625.2	1580	tCa/tTa																																																																														
YAP1	0	MSKCC	GRCh37	11	102076762	102076764	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	21	557	0	ENST00000282441.5:c.943_945del	p.Lys315del	p.K315del	ENST00000282441	NM_001130145.2	314	gAGAag/gag																																																																														
PRKD1	0	MSKCC	GRCh37	14	30066811	30066811	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	51	495	0	ENST00000331968.5:c.2320T>C	p.Tyr774His	p.Y774H	ENST00000331968	NM_002742.2	774	Tat/Cat																																																																														
DNMT1	0	MSKCC	GRCh37	19	10260251	10260251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	45	506	0	ENST00000340748.4:c.2416G>T	p.Gly806Trp	p.G806W	ENST00000340748		806	Ggg/Tgg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463289	25463289	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	63	441	1	ENST00000264709.3:c.2204A>T	p.Tyr735Phe	p.Y735F	ENST00000264709	NM_175629.2	735	tAc/tTc																																																																														
SETD2	0	MSKCC	GRCh37	3	47164090	47164090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	79	381	0	ENST00000409792.3:c.2036C>T	p.Ala679Val	p.A679V	ENST00000409792	NM_014159.6	679	gCa/gTa																																																																														
NBN	0	MSKCC	GRCh37	8	90995076	90995087	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTTCTCCTGA	TGGTTCTCCTGA	ATTTAT			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	95	381	3	ENST00000265433.3:c.38-4_45delinsATAAAT		p.X13_splice	ENST00000265433	NM_002485.4	13																																																																															
MYC	0	MSKCC	GRCh37	8	128752987	128752987	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	34	352	0	ENST00000377970.2:c.1148A>T	p.Asn383Ile	p.N383I	ENST00000377970	NM_002467.4	383	aAc/aTc																																																																														
RBM10	0	MSKCC	GRCh37	X	47004897	47004897	+	intron_variant	Intron	SNP	G	G	T			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	55	412	0	ENST00000377604.3:c.-126+13G>T		p.*42*	ENST00000377604	NM_001204468.1																																																																																
RBM10	0	MSKCC	GRCh37	X	47040675	47040675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	62	634	0	ENST00000329236.7:c.1076A>G	p.Tyr359Cys	p.Y359C	ENST00000329236	NM_001204466.1	359	tAc/tGc																																																																														
AR	0	MSKCC	GRCh37	X	66931426	66931426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	95	580	0	ENST00000374690.3:c.2068C>A	p.His690Asn	p.H690N	ENST00000374690	NM_000044.3	690	Cac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	83	679	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
U2AF1	0	MSKCC	GRCh37	21	44524486	44524486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	38	312	0	ENST00000291552.4:c.71T>C	p.Ile24Thr	p.I24T	ENST00000291552	NM_006758.2	24	aTt/aCt																																																																														
TP53	0	MSKCC	GRCh37	17	7579336	7579337	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0024952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	75	624	0	ENST00000269305.4:c.350_351del	p.Gly117AspfsTer31	p.G117Dfs*31	ENST00000269305	NM_001126112.2	117	gGG/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0024959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	61	553	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578259	7578259	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	128	486	0	ENST00000269305.4:c.590T>A	p.Val197Glu	p.V197E	ENST00000269305	NM_001126112.2	197	gTg/gAg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851687	134851687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	39	347	0	ENST00000398015.3:c.1093G>A	p.Ala365Thr	p.A365T	ENST00000398015	NM_004441.4	365	Gca/Aca																																																																														
HGF	0	MSKCC	GRCh37	7	81374379	81374379	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	54	401	0	ENST00000222390.5:c.683C>A	p.Ser228Ter	p.S228*	ENST00000222390	NM_000601.4	228	tCa/tAa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49447081	49447088	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTTAGA	ATCTTAGA	T			P-0024959-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	31	485	0	ENST00000301067.7:c.856_863delinsA	p.Lys287TrpfsTer15	p.K287Wfs*15	ENST00000301067	NM_003482.3	286	TCTAAGATg/Ag																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	36	96	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																																																														
JAK1	0	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	80	364	4	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
JAK1	0	MSKCC	GRCh37	1	65339110	65339111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	97	480	6	ENST00000342505.4:c.425dupA	p.Ile143AspfsTer9	p.I143Dfs*9	ENST00000342505	NM_002227.2	142	aag/aaAg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	120	478	1	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	54	411	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
PTEN	0	MSKCC	GRCh37	10	89717730	89717731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	171	422	0	ENST00000371953.3:c.756dup	p.Ile253TyrfsTer45	p.I253Yfs*45	ENST00000371953	NM_000314.4	252	gat/gaTt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118363830	118363830	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	120	427	0	ENST00000534358.1:c.5067del	p.Glu1690LysfsTer20	p.E1690Kfs*20	ENST00000534358	NM_005933.3	1688	tCc/tc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	105	429	5	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	279	500	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
PTPN11	0	MSKCC	GRCh37	12	112919885	112919885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	30	204	0	ENST00000351677.2:c.1100G>A	p.Cys367Tyr	p.C367Y	ENST00000351677	NM_002834.3	367	tGt/tAt																																																																														
BRCA2	675	MSKCC	GRCh37	13	32954022	32954023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1305653361		P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	83	523	5	ENST00000380152.3:c.9097dup	p.Thr3033AsnfsTer11	p.T3033Nfs*11	ENST00000380152		3030	aca/acAa																																																																														
MGA	0	MSKCC	GRCh37	15	42052726	42052744	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTAAGTGTTCTGTGTAA	GAGTAAGTGTTCTGTGTAA	-			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	43	405	0	ENST00000219905.7:c.7397_7398+17del		p.X2466_splice	ENST00000219905	NM_001164273.1	2466																																																																															
TSC2	0	MSKCC	GRCh37	16	2113050	2113050	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	160	469	1	ENST00000219476.3:c.1439A>G	p.Tyr480Cys	p.Y480C	ENST00000219476	NM_000548.3	480	tAt/tGt																																																																														
CTCF	0	MSKCC	GRCh37	16	67655481	67655481	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	65	469	2	ENST00000264010.4:c.1348delA	p.Ser450ValfsTer61	p.S450Vfs*61	ENST00000264010	NM_006565.3	448	cgA/cg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	82	307	0	ENST00000268489.5:c.2287dupG	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																																																														
TP53	0	MSKCC	GRCh37	17	7572991	7572991	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	105	409	0	ENST00000269305.4:c.1118delA	p.Lys373ArgfsTer49	p.K373Rfs*49	ENST00000269305	NM_001126112.2	373	aAg/ag																																																																														
SOX9	0	MSKCC	GRCh37	17	70118940	70118941	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	153	519	0	ENST00000245479.2:c.514dupT	p.Tyr172LeufsTer80	p.Y172Lfs*80	ENST00000245479	NM_000346.3	171	gat/gaTt																																																																														
UPF1	0	MSKCC	GRCh37	19	18975039	18975039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	84	315	0	ENST00000262803.5:c.2836G>A	p.Val946Ile	p.V946I	ENST00000262803	NM_002911.3	946	Gtc/Atc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	187	542	0	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
ASXL2	55252	MSKCC	GRCh37	2	26068421	26068421	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	104	449	0	ENST00000435504.4:c.69del	p.Lys23AsnfsTer7	p.K23Nfs*7	ENST00000435504		23	aaA/aa																																																																														
CUL3	0	MSKCC	GRCh37	2	225368395	225368395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	85	522	1	ENST00000264414.4:c.1351G>A	p.Glu451Lys	p.E451K	ENST00000264414	NM_003590.4	451	Gaa/Aaa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022697	31022697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	94	420	1	ENST00000375687.4:c.2182G>A	p.Glu728Lys	p.E728K	ENST00000375687	NM_015338.5	728	Gaa/Aaa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735488	40735488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	161	489	1	ENST00000373198.4:c.3385G>A	p.Val1129Met	p.V1129M	ENST00000373198	NM_133170.3	1129	Gtg/Atg																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42845309	42845309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	157	469	1	ENST00000398585.3:c.953G>A	p.Cys318Tyr	p.C318Y	ENST00000398585	NM_001135099.1	318	tGc/tAc																																																																														
SETD2	0	MSKCC	GRCh37	3	47155487	47155487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	74	373	0	ENST00000409792.3:c.4594C>T	p.Arg1532Trp	p.R1532W	ENST00000409792	NM_014159.6	1532	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	121	631	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928080	178928080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	96	521	0	ENST00000263967.3:c.1358A>G	p.Glu453Gly	p.E453G	ENST00000263967	NM_006218.2	453	gAa/gGa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591054	67591056	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	51	266	0	ENST00000274335.5:c.1651_1653del	p.Lys551del	p.K551del	ENST00000274335		549	ttGAAg/ttg																																																																														
MSH3	0	MSKCC	GRCh37	5	79974821	79974821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143211109		P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	177	462	0	ENST00000265081.6:c.1249C>T	p.Arg417Trp	p.R417W	ENST00000265081	NM_002439.4	417	Cgg/Tgg																																																																														
SMO	0	MSKCC	GRCh37	7	128852017	128852018	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	108	464	0	ENST00000249373.3:c.2094dup	p.Ser699GlnfsTer118	p.S699Qfs*118	ENST00000249373	NM_005631.4	697	gcc/gCcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	117	557	1	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226007	53226007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	162	533	0	ENST00000375401.3:c.2842G>A	p.Ala948Thr	p.A948T	ENST00000375401	NM_004187.3	948	Gct/Act																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0025013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	49	307	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	117	515	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212426722	212426722	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	38	524	0	ENST00000342788.4:c.2393T>G	p.Leu798Arg	p.L798R	ENST00000342788	NM_005235.2	798	cTt/cGt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858746	9858746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	26	279	0	ENST00000330684.3:c.2655C>A	p.Phe885Leu	p.F885L	ENST00000330684	NM_001134407.1	885	ttC/ttA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	349	696	2	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
SMO	0	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	13	98	0	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg																																																																														
CIC	0	MSKCC	GRCh37	19	42799050	42799050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2070	458	794	1	ENST00000575354.2:c.4534C>T	p.Arg1512Cys	p.R1512C	ENST00000575354	NM_015125.3	1512	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	268	488	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
GLI1	0	MSKCC	GRCh37	12	57860126	57860126	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1302	348	657	0	ENST00000228682.2:c.866T>G	p.Val289Gly	p.V289G	ENST00000228682	NM_005269.2	289	gTg/gGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47032554	47032554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	1012	327	2	ENST00000329236.7:c.229G>T	p.Val77Leu	p.V77L	ENST00000329236	NM_001204466.1	77	Gtg/Ttg																																																																														
IGF2	0	MSKCC	GRCh37	11	2154263	2154263	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1341	354	599	0	ENST00000434045.2:c.665C>G	p.Pro222Arg	p.P222R	ENST00000434045	NM_001127598.1	222	cCc/cGc																																																																														
WT1	0	MSKCC	GRCh37	11	32438072	32438072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	519	517	0	ENST00000332351.3:c.965G>T	p.Ser322Ile	p.S322I	ENST00000332351	NM_024426.4	322	aGc/aTc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373754	118373754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	189	461	0	ENST00000534358.1:c.7147G>T	p.Asp2383Tyr	p.D2383Y	ENST00000534358	NM_005933.3	2383	Gac/Tac																																																																														
RECQL	0	MSKCC	GRCh37	12	21626516	21626516	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	1040	691	2	ENST00000421138.2:c.1416C>A	p.Asn472Lys	p.N472K	ENST00000421138		472	aaC/aaA																																																																														
GLI1	0	MSKCC	GRCh37	12	57864856	57864856	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	703	703	1	ENST00000228682.2:c.2333A>T	p.Glu778Val	p.E778V	ENST00000228682	NM_005269.2	778	gAa/gTa																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281477	49281477	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	286	650	0	ENST00000282018.3:c.524A>C	p.Asp175Ala	p.D175A	ENST00000282018	NM_020377.2	175	gAc/gCc																																																																														
MGA	0	MSKCC	GRCh37	15	42034992	42034992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	697	614	0	ENST00000219905.7:c.4834G>T	p.Val1612Leu	p.V1612L	ENST00000219905	NM_001164273.1	1612	Gtg/Ttg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16052833	16052833	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	124	461	0	ENST00000268712.3:c.843-2A>G		p.X281_splice	ENST00000268712	NM_006311.3	281																																																																															
NF1	0	MSKCC	GRCh37	17	29486081	29486081	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	403	624	2	ENST00000358273.4:c.258A>G	p.Ile86Met	p.I86M	ENST00000358273	NM_001042492.2	86	atA/atG																																																																														
STAT5B	0	MSKCC	GRCh37	17	40364198	40364198	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	421	880	1	ENST00000293328.3:c.1484del	p.Pro495HisfsTer19	p.P495Hfs*19	ENST00000293328	NM_012448.3	495	cCa/ca																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584501	48584501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	201	429	0	ENST00000342988.3:c.674C>T	p.Pro225Leu	p.P225L	ENST00000342988	NM_005359.5	225	cCt/cTt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212488736	212488736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	1029	602	0	ENST00000342788.4:c.2113C>T	p.Pro705Ser	p.P705S	ENST00000342788	NM_005235.2	705	Ccc/Tcc																																																																														
MYD88	0	MSKCC	GRCh37	3	38180195	38180195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	939	429	0	ENST00000396334.3:c.43G>T	p.Ala15Ser	p.A15S	ENST00000396334	NM_002468.4	15	Gct/Tct																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391022	89391022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	533	645	0	ENST00000336596.2:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000336596	NM_005233.5	363	tGt/tTt																																																																														
KDR	0	MSKCC	GRCh37	4	55968600	55968600	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	700	703	2	ENST00000263923.4:c.2063G>C	p.Cys688Ser	p.C688S	ENST00000263923	NM_002253.2	688	tGc/tCc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168671	56168671	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	451	500	0	ENST00000399503.3:c.1525G>C	p.Val509Leu	p.V509L	ENST00000399503	NM_005921.1	509	Gtg/Ctg																																																																														
IRF4	0	MSKCC	GRCh37	6	407507	407507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	468	663	1	ENST00000380956.4:c.1265G>A	p.Gly422Glu	p.G422E	ENST00000380956	NM_001195286.1	422	gGa/gAa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509676	106509676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	282	535	0	ENST00000359195.3:c.1670C>A	p.Ala557Glu	p.A557E	ENST00000359195	NM_002649.2	557	gCg/gAg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106524689	106524689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	373	447	0	ENST00000359195.3:c.2850C>A	p.Asp950Glu	p.D950E	ENST00000359195	NM_002649.2	950	gaC/gaA																																																																														
PREX2	0	MSKCC	GRCh37	8	69143594	69143594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	210	459	0	ENST00000288368.4:c.4802C>T	p.Pro1601Leu	p.P1601L	ENST00000288368	NM_024870.2	1601	cCc/cTc																																																																														
RAD21	0	MSKCC	GRCh37	8	117864889	117864889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	457	643	1	ENST00000297338.2:c.1220G>T	p.Gly407Val	p.G407V	ENST00000297338	NM_006265.2	407	gGa/gTa																																																																														
AMER1	0	MSKCC	GRCh37	X	63412371	63412371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	677	433	0	ENST00000330258.3:c.796G>T	p.Ala266Ser	p.A266S	ENST00000330258	NM_152424.3	266	Gcc/Tcc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	24	317	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	32	586	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	24	522	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	154	620	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	39	301	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	62	319	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
CDK8	0	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	53	488	0	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10254637	10254637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	27	380	0	ENST00000340748.4:c.2873G>A	p.Arg958His	p.R958H	ENST00000340748		958	cGc/cAc																																																																														
HRAS	0	MSKCC	GRCh37	11	533881	533881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	90	567	1	ENST00000311189.7:c.175G>A	p.Ala59Thr	p.A59T	ENST00000311189		59	Gcc/Acc																																																																														
ATM	0	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	57	455	3	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	22	430	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
NUP93	0	MSKCC	GRCh37	16	56852600	56852600	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	52	456	1	ENST00000308159.5:c.518del	p.Pro173LeufsTer25	p.P173Lfs*25	ENST00000308159	NM_014669.4	172	Ccc/cc																																																																														
MTOR	0	MSKCC	GRCh37	1	11319406	11319406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149221273		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	29	497	1	ENST00000361445.4:c.61G>A	p.Val21Ile	p.V21I	ENST00000361445	NM_004958.3	21	Gtc/Atc																																																																														
CARD11	0	MSKCC	GRCh37	7	2962930	2962930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	31	709	2	ENST00000396946.4:c.1978C>T	p.Arg660Trp	p.R660W	ENST00000396946	NM_032415.4	660	Cgg/Tgg																																																																														
FAT1	2195	MSKCC	GRCh37	4	187630605	187630605	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	44	616	0	ENST00000441802.2:c.377del	p.Asn126IlefsTer20	p.N126Ifs*20	ENST00000441802	NM_005245.3	126	aAt/at																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	41	357	1	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251725	212251725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144311212		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	30	344	0	ENST00000342788.4:c.3334C>T	p.Arg1112Cys	p.R1112C	ENST00000342788	NM_005235.2	1112	Cgc/Tgc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	36	604	1	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31324892	31324892	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs765875917		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	15	152	0	ENST00000412585.2:c.44del	p.Ala15GlyfsTer5	p.A15Gfs*5	ENST00000412585	NM_005514.6	15	gCg/gg																																																																														
MAPKAP1	79109	MSKCC	GRCh37	9	128420047	128420047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	65	585	5	ENST00000265960.3:c.381del	p.Lys127AsnfsTer20	p.K127Nfs*20	ENST00000265960	NM_001006617.1	127	aaA/aa																																																																														
CIC	0	MSKCC	GRCh37	19	42793430	42793430	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144065857		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	20	466	1	ENST00000575354.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000575354	NM_015125.3	411	gCg/gTg																																																																														
MSH2	0	MSKCC	GRCh37	2	47641560	47641560	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	27	134	0	ENST00000233146.2:c.942+3A>T		p.X314_splice	ENST00000233146	NM_000251.2	314																																																																															
PTPRS	0	MSKCC	GRCh37	19	5221060	5221060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140049694		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	21	422	3	ENST00000357368.4:c.3406G>A	p.Gly1136Ser	p.G1136S	ENST00000357368	NM_002850.3	1136	Ggc/Agc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434054	49434054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	32	444	0	ENST00000301067.7:c.7499C>T	p.Ala2500Val	p.A2500V	ENST00000301067	NM_003482.3	2500	gCg/gTg																																																																														
ELF3	0	MSKCC	GRCh37	1	201980402	201980402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	63	634	1	ENST00000359651.3:c.142del	p.Gln48ArgfsTer107	p.Q48Rfs*107	ENST00000359651		46	aaC/aa																																																																														
PARP1	0	MSKCC	GRCh37	1	226573320	226573320	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141200001		P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	48	459	0	ENST00000366794.5:c.896C>T	p.Ser299Leu	p.S299L	ENST00000366794	NM_001618.3	299	tCg/tTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71940202	71940202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	57	562	0	ENST00000298229.2:c.587C>T	p.Ala196Val	p.A196V	ENST00000298229	NM_001567.3	196	gCt/gTt																																																																														
PTPN11	0	MSKCC	GRCh37	12	112926866	112926866	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	72	680	0	ENST00000351677.2:c.1486A>T	p.Met496Leu	p.M496L	ENST00000351677	NM_002834.3	496	Atg/Ttg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3799644	3799644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	42	587	0	ENST00000262367.5:c.3820A>G	p.Thr1274Ala	p.T1274A	ENST00000262367	NM_004380.2	1274	Acc/Gcc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37883774	37883774	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	35	665	2	ENST00000269571.5:c.3391delC	p.Leu1131Ter	p.L1131*	ENST00000269571		1129	gCc/gc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78519468	78519468	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	46	441	0	ENST00000306801.3:c.43del	p.Glu15ArgfsTer17	p.E15Rfs*17	ENST00000306801	NM_020761.2	13	ctG/ct																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4094485	4094485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	43	632	0	ENST00000262948.5:c.1058A>G	p.Asn353Ser	p.N353S	ENST00000262948	NM_030662.3	353	aAc/aGc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097014	11097014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	27	555	0	ENST00000344626.4:c.505C>A	p.Pro169Thr	p.P169T	ENST00000344626	NM_003072.3	169	Cca/Aca																																																																														
UPF1	0	MSKCC	GRCh37	19	18976139	18976139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	38	597	0	ENST00000262803.5:c.2899G>T	p.Gly967Cys	p.G967C	ENST00000262803	NM_002911.3	967	Ggc/Tgc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19256742	19256742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	63	414	0	ENST00000162023.5:c.971C>A	p.Ser324Tyr	p.S324Y	ENST00000162023		324	tCt/tAt																																																																														
MSH2	0	MSKCC	GRCh37	2	47703507	47703507	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	71	418	0	ENST00000233146.2:c.2010del	p.Asn671IlefsTer14	p.N671Ifs*14	ENST00000233146	NM_000251.2	669	ggC/gg																																																																														
ERCC3	0	MSKCC	GRCh37	2	128044543	128044543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	38	440	0	ENST00000285398.2:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000285398	NM_000122.1	360	Cgc/Tgc																																																																														
PMS1	0	MSKCC	GRCh37	2	190719073	190719073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	41	300	0	ENST00000441310.2:c.1075G>T	p.Val359Phe	p.V359F	ENST00000441310	NM_000534.4	359	Gtt/Ttt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212252701	212252701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	32	220	0	ENST00000342788.4:c.3152G>T	p.Ser1051Ile	p.S1051I	ENST00000342788	NM_005235.2	1051	aGc/aTc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42866377	42866377	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	49	526	1	ENST00000398585.3:c.255del	p.Val86CysfsTer9	p.V86Cfs*9	ENST00000398585	NM_001135099.1	85	ccC/cc																																																																														
U2AF1	0	MSKCC	GRCh37	21	44513265	44513265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	37	473	1	ENST00000291552.4:c.670C>T	p.Arg224Trp	p.R224W	ENST00000291552	NM_006758.2	224	Cgg/Tgg																																																																														
EP300	0	MSKCC	GRCh37	22	41553224	41553224	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	65	570	0	ENST00000263253.7:c.3313A>G	p.Lys1105Glu	p.K1105E	ENST00000263253	NM_001429.3	1105	Aag/Gag																																																																														
MST1R	0	MSKCC	GRCh37	3	49924823	49924823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	42	684	1	ENST00000296474.3:c.4120C>T	p.Arg1374Cys	p.R1374C	ENST00000296474	NM_002447.2	1374	Cgt/Tgt																																																																														
TP63	0	MSKCC	GRCh37	3	189586505	189586505	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	23	313	0	ENST00000264731.3:c.1129C>T	p.Pro377Ser	p.P377S	ENST00000264731	NM_003722.4	377	Ccg/Tcg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38955721	38955721	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	37	372	0	ENST00000357387.3:c.2585A>G	p.Asn862Ser	p.N862S	ENST00000357387	NM_152756.3	862	aAc/aGc																																																																														
APC	0	MSKCC	GRCh37	5	112170759	112170772	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCTTACTTACCG	ACTCTTACTTACCG	-			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	80	593	0	ENST00000257430.4:c.1855_1868del	p.Thr619GlufsTer10	p.T619Efs*10	ENST00000257430	NM_000038.5	619	ACTCTTACTTACCGg/g																																																																														
AR	0	MSKCC	GRCh37	X	66931404	66931404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	108	568	1	ENST00000374690.3:c.2046G>T	p.Glu682Asp	p.E682D	ENST00000374690	NM_000044.3	682	gaG/gaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	62	519	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	83	506	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	46	472	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	42	296	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																														
APC	0	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	48	227	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																														
CARD11	0	MSKCC	GRCh37	7	2962304	2962304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	46	583	0	ENST00000396946.4:c.2233G>A	p.Gly745Ser	p.G745S	ENST00000396946	NM_032415.4	745	Ggc/Agc																																																																														
FLT4	0	MSKCC	GRCh37	5	180047894	180047894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	83	663	0	ENST00000261937.6:c.2281G>A	p.Ala761Thr	p.A761T	ENST00000261937	NM_182925.4	761	Gcc/Acc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31495463	31495463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	73	432	0	ENST00000344624.3:c.1685G>A	p.Arg562His	p.R562H	ENST00000344624		562	cGt/cAt																																																																														
ERF	0	MSKCC	GRCh37	19	42753836	42753836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	97	650	4	ENST00000222329.4:c.428G>A	p.Arg143His	p.R143H	ENST00000222329	NM_006494.2	143	cGc/cAc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920434	114920434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	82	476	0	ENST00000543371.1:c.1375T>C	p.Trp459Arg	p.W459R	ENST00000543371	NM_001198531.1	459	Tgg/Cgg																																																																														
TCF3	0	MSKCC	GRCh37	19	1622118	1622131	+	frameshift_variant	Frame_Shift_Del	DEL	TACCGGGCGGGAGG	TACCGGGCGGGAGG	-			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	67	579	0	ENST00000344749.5:c.744_757del	p.Leu249ArgfsTer95	p.L249Rfs*95	ENST00000344749	NM_001136139.2	248	ccCCTCCCGCCCGGTAgc/ccgc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41274910	41274910	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	73	414	0	ENST00000349496.5:c.1160A>T	p.Asn387Ile	p.N387I	ENST00000349496	NM_001904.3	387	aAt/aTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	39	219	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	0	MSKCC	GRCh37	1	27057874	27057874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	89	479	0	ENST00000324856.7:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000324856	NM_006015.4	528	Cag/Tag																																																																														
TSC1	0	MSKCC	GRCh37	9	135781440	135781440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	63	293	0	ENST00000298552.3:c.1525C>T	p.Arg509Ter	p.R509*	ENST00000298552	NM_001162426.1	509	Cga/Tga																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740727	58740727	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	65	391	1	ENST00000305921.3:c.1636delC	p.Leu546Ter	p.L546*	ENST00000305921	NM_003620.3	544	ggC/gg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891275	101891275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	94	444	1	ENST00000374994.4:c.236C>A	p.Pro79His	p.P79H	ENST00000374994	NM_004612.2	79	cCt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	714	559	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266714	198266714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	175	502	0	ENST00000335508.6:c.2218G>A	p.Gly740Arg	p.G740R	ENST00000335508	NM_012433.2	740	Gga/Aga																																																																														
ATM	0	MSKCC	GRCh37	11	108196951	108196951	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs200940211		P-0025137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	20	317	0	ENST00000278616.4:c.6974C>T	p.Ala2325Val	p.A2325V	ENST00000278616	NM_000051.3	2325	gCg/gTg																																																																														
SETD8	0	MSKCC	GRCh37	12	123875214	123875214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	121	360	0	ENST00000330479.4:c.170A>G	p.Tyr57Cys	p.Y57C	ENST00000330479	NM_020382.3	57	tAc/tGc																																																																														
CDK8	0	MSKCC	GRCh37	13	26927919	26927919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	220	447	0	ENST00000381527.3:c.358C>G	p.Pro120Ala	p.P120A	ENST00000381527	NM_001260.1	120	Cca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	37	505	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SF3B1	23451	MSKCC	GRCh37	2	198266713	198266713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776846119		P-0025154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	46	470	0	ENST00000335508.6:c.2219G>A	p.Gly740Glu	p.G740E	ENST00000335508	NM_012433.2	740	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			39	338	638	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	206	516	1	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	239	443	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32953650	32953650	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	580	426	0	ENST00000380152.3:c.8951C>T	p.Ser2984Leu	p.S2984L	ENST00000380152		2984	tCa/tTa																																																																														
DICER1	0	MSKCC	GRCh37	14	95557411	95557411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	330	555	1	ENST00000343455.3:c.5563C>T	p.Arg1855Ter	p.R1855*	ENST00000343455	NM_177438.2	1855	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584538	48584539	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	315	542	0	ENST00000342988.3:c.713dup	p.Leu238PhefsTer26	p.L238Ffs*26	ENST00000342988	NM_005359.5	237	-/T																																																																														
MST1	0	MSKCC	GRCh37	3	49721513	49721513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	319	638	0	ENST00000449682.2:c.2126C>T	p.Thr709Met	p.T709M	ENST00000449682	NM_020998.3	709	aCg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112175610	112175619	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACCTCC	CACCACCTCC	AACACCTCG			P-0025157-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	98	362	0	ENST00000257430.4:c.4319_4328delinsAACACCTCG	p.Pro1440GlnfsTer33	p.P1440Qfs*33	ENST00000257430	NM_000038.5	1440	cCACCACCTCCt/cAACACCTCGt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	613	895	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482425	56482425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	234	618	0	ENST00000267101.3:c.973G>A	p.Gly325Arg	p.G325R	ENST00000267101	NM_001982.3	325	Gga/Aga																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	151	601	1	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	325	934	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023873	27023873	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0025160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	88	149	1	ENST00000324856.7:c.979A>T	p.Lys327Ter	p.K327*	ENST00000324856	NM_006015.4	327	Aag/Tag																																																																														
NTHL1	0	MSKCC	GRCh37	16	2094744	2094744	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	408	987	2	ENST00000219066.1:c.436G>T	p.Val146Leu	p.V146L	ENST00000219066	NM_002528.5	146	Gtg/Ttg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266041	41266672	+	splice_acceptor_variant,splice_donor_variant,stop_lost,protein_altering_variant,intron_variant	Splice_Site	DEL	CCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGA	CCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGA	-			P-0025160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	89	344	0	ENST00000349496.5:c.39_470del		p.X13_splice	ENST00000349496	NM_001904.3	13	gCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGAca/gca																																																																														
MITF	0	MSKCC	GRCh37	3	70005682	70005682	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	121	545	3	ENST00000352241.4:c.1013+1G>A		p.X338_splice	ENST00000352241	NM_198159.2	338																																																																															
TGFBR1	0	MSKCC	GRCh37	9	101908891	101908891	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0025160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	223	741	0	ENST00000374994.4:c.1255G>C	p.Gly419Arg	p.G419R	ENST00000374994	NM_004612.2	419	Gga/Cga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0025170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	237	496	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	201	669	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG																																																																														
KIT	0	MSKCC	GRCh37	4	55593431	55593431	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs72550822		P-0025170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	24	397	1	ENST00000288135.5:c.1588G>A	p.Val530Ile	p.V530I	ENST00000288135	NM_000222.2	530	Gta/Ata																																																																														
MUTYH	0	MSKCC	GRCh37	1	45796941	45796941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	73	568	0	ENST00000372115.3:c.1347G>C	p.Gln449His	p.Q449H	ENST00000372115	NM_001048171.1	449	caG/caC																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952148	178952158	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	ACTGAAAAGAT	ACTGAAAAGAT	-			P-0025170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	225	13	0	ENST00000263967.3:c.3204_*7del		p.*1068*	ENST00000263967	NM_006218.2	1068																																																																															
NSD1	0	MSKCC	GRCh37	5	176636869	176636869	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	75	421	0	ENST00000439151.2:c.1469A>G	p.Lys490Arg	p.K490R	ENST00000439151	NM_022455.4	490	aAg/aGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	148	270	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	108	230	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	45	104	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																															
NCOR1	0	MSKCC	GRCh37	17	16005024	16005024	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	200	413	0	ENST00000268712.3:c.2230C>T	p.Arg744Ter	p.R744*	ENST00000268712	NM_006311.3	744	Cga/Tga																																																																														
NF1	0	MSKCC	GRCh37	17	29554253	29554253	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	20	203	0	ENST00000358273.4:c.2272del	p.Arg758GlufsTer2	p.R758Efs*2	ENST00000358273	NM_001042492.2	757	Aaa/aa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56167742	56167743	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGATGAG			P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	114	243	0	ENST00000399503.3:c.1313_1314insGGGATGA	p.Glu439GlyfsTer2	p.E439Gfs*2	ENST00000399503	NM_005921.1	436	aag/aaGGATGAGg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168550	56168550	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	163	248	0	ENST00000399503.3:c.1505+1G>T		p.X502_splice	ENST00000399503	NM_005921.1	502																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	473	565	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32171645	32171645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	71	568	1	ENST00000375023.3:c.3133G>A	p.Val1045Met	p.V1045M	ENST00000375023	NM_004557.3	1045	Gtg/Atg																																																																														
KIT	0	MSKCC	GRCh37	4	55561756	55561756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	281	466	0	ENST00000288135.5:c.146G>A	p.Arg49His	p.R49H	ENST00000288135	NM_000222.2	49	cGc/cAc																																																																														
IRS2	0	MSKCC	GRCh37	13	110434836	110434836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1474	220	629	0	ENST00000375856.3:c.3565G>A	p.Gly1189Ser	p.G1189S	ENST00000375856	NM_003749.2	1189	Ggc/Agc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89371707	89371707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	83	599	0	ENST00000301030.4:c.133G>A	p.Gly45Ser	p.G45S	ENST00000301030	NM_001256183.1	45	Ggc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112174375	112174384	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTAAATAT	TCTTAAATAT	-			P-0025201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	303	357	0	ENST00000257430.4:c.3086_3095del	p.Leu1029GlnfsTer5	p.L1029Qfs*5	ENST00000257430	NM_000038.5	1028	agTCTTAAATAT/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	289	503	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	182	454	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575096	48575096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	89	419	1	ENST00000342988.3:c.290G>A	p.Arg97His	p.R97H	ENST00000342988	NM_005359.5	97	cGt/cAt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288489	15288489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	33	171	1	ENST00000263388.2:c.4250G>A	p.Cys1417Tyr	p.C1417Y	ENST00000263388	NM_000435.2	1417	tGc/tAc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52613119	52613119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	138	425	1	ENST00000394830.3:c.3409G>A	p.Asp1137Asn	p.D1137N	ENST00000394830	NM_018313.4	1137	Gac/Aac																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803144	1803144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	137	412	1	ENST00000260795.2:c.496G>A	p.Val166Met	p.V166M	ENST00000260795		166	Gtg/Atg																																																																														
APC	0	MSKCC	GRCh37	5	112175264	112175301	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGTGTCACAGCACCCTAGAACCAAATCCAGCAGACT	GCAGTGTCACAGCACCCTAGAACCAAATCCAGCAGACT	-			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	105	289	0	ENST00000257430.4:c.3977_4014del	p.Val1326GlyfsTer3	p.V1326Gfs*3	ENST00000257430	NM_000038.5	1325	GCAGTGTCACAGCACCCTAGAACCAAATCCAGCAGACTg/g																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056080	26056118	+	inframe_deletion	In_Frame_Del	DEL	CAGCCTTAGCAGCACTTTTGGCAGCTTTCTTGGGCTTCG	CAGCCTTAGCAGCACTTTTGGCAGCTTTCTTGGGCTTCG	-			P-0025208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	51	347	0	ENST00000343677.2:c.539_577delCGAAGCCCAAGAAAGCTGCCAAAAGTGCTGCTAAGGCTG	p.Ala180_Ala192del	p.A180_A192del	ENST00000343677	NM_005319.3	180	gCGAAGCCCAAGAAAGCTGCCAAAAGTGCTGCTAAGGCTGtg/gtg																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0025228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	22	401	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0025228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	106	274	1	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162916	38162916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	85	346	1	ENST00000317025.8:c.2290C>T	p.Arg764Cys	p.R764C	ENST00000317025	NM_023034.1	764	Cgt/Tgt																																																																														
AMER1	0	MSKCC	GRCh37	X	63413070	63413070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	46	206	0	ENST00000330258.3:c.97G>A	p.Ala33Thr	p.A33T	ENST00000330258	NM_152424.3	33	Gca/Aca																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	363	592	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	183	559	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	462	637	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																																																														
FLT1	0	MSKCC	GRCh37	13	29001366	29001366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	571	391	0	ENST00000282397.4:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000282397	NM_002019.4	456	Gca/Aca																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281699	49281699	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1287	309	855	0	ENST00000282018.3:c.746T>C	p.Ile249Thr	p.I249T	ENST00000282018	NM_020377.2	249	aTc/aCc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198260834	198260834	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	187	642	0	ENST00000335508.6:c.3485G>C	p.Gly1162Ala	p.G1162A	ENST00000335508	NM_012433.2	1162	gGa/gCa																																																																														
FAT1	0	MSKCC	GRCh37	4	187539348	187539348	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	138	487	0	ENST00000441802.2:c.8392C>G	p.Gln2798Glu	p.Q2798E	ENST00000441802	NM_005245.3	2798	Caa/Gaa																																																																														
APC	324	MSKCC	GRCh37	5	112175784	112175799	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGATTTTCTTGTTC	ATGGATTTTCTTGTTC	-			P-0025244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	184	346	0	ENST00000257430.4:c.4495_4510del	p.Gly1499ProfsTer3	p.G1499Pfs*3	ENST00000257430	NM_000038.5	1498	gATGGATTTTCTTGTTCa/ga																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169019	32169019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	174	722	0	ENST00000375023.3:c.4014G>A	p.Met1338Ile	p.M1338I	ENST00000375023	NM_004557.3	1338	atG/atA																																																																														
EGFR	0	MSKCC	GRCh37	7	55248980	55248981	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	TCCAGGAAGCCT			P-0025284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1418	82	375	0	ENST00000275493.2:c.2284-5_2290dup		p.X762_splice	ENST00000275493	NM_005228.3	762																																																																															
KMT2C	0	MSKCC	GRCh37	7	151873717	151873717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	140	541	0	ENST00000262189.6:c.8821C>A	p.Pro2941Thr	p.P2941T	ENST00000262189	NM_170606.2	2941	Cca/Aca																																																																														
PTEN	0	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	150	410	0	ENST00000371953.3:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000371953	NM_000314.4	92	Gac/Tac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056343	27056344	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0025309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	227	284	0	ENST00000324856.7:c.1341_1342delTA	p.Gln449AlafsTer173	p.Q449Afs*173	ENST00000324856	NM_006015.4	447	TAt/t																																																																														
MYC	0	MSKCC	GRCh37	8	128750686	128750686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	164	425	0	ENST00000377970.2:c.223C>T	p.Pro75Ser	p.P75S	ENST00000377970	NM_002467.4	75	Ccc/Tcc																																																																														
ERG	0	MSKCC	GRCh37	21	39764303	39764303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	281	652	0	ENST00000288319.7:c.809C>T	p.Ser270Leu	p.S270L	ENST00000288319	NM_182918.3	270	tCg/tTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916940	178916957	+	inframe_deletion	In_Frame_Del	DEL	AGAAAAGATCCTCAATCG	AGAAAAGATCCTCAATCG	-			P-0025309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	70	397	0	ENST00000263967.3:c.332_349del	p.Lys111_Glu116del	p.K111_E116del	ENST00000263967	NM_006218.2	109	gaAGAAAAGATCCTCAATCGa/gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	156	482	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
SRSF2	0	MSKCC	GRCh37	17	74733236	74733236	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	93	231	0	ENST00000359995.5:c.7T>A	p.Tyr3Asn	p.Y3N	ENST00000359995	NM_001195427.1	3	Tac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	189	689	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	119	355	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	272	563	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	89	711	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	439	618	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	72	611	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396925	139396925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	44	384	3	ENST00000277541.6:c.5183C>T	p.Pro1728Leu	p.P1728L	ENST00000277541	NM_017617.3	1728	cCg/cTg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528647	89528647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	38	235	0	ENST00000336596.2:c.2947G>A	p.Val983Met	p.V983M	ENST00000336596	NM_005233.5	983	Gtg/Atg																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20159747	20159747	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	69	441	0	ENST00000379607.5:c.12T>A	p.Asn4Lys	p.N4K	ENST00000379607	NM_001412.3	4	aaT/aaA																																																																														
FGFR2	0	MSKCC	GRCh37	10	123325123	123325123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	60	671	1	ENST00000358487.5:c.205G>A	p.Val69Met	p.V69M	ENST00000358487	NM_000141.4	69	Gtg/Atg																																																																														
TOP1	0	MSKCC	GRCh37	20	39721179	39721179	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	430	710	0	ENST00000361337.2:c.682G>T	p.Ala228Ser	p.A228S	ENST00000361337	NM_003286.2	228	Gcc/Tcc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52696281	52696283	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0025362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	301	549	0	ENST00000394830.3:c.394_396del	p.Pro132del	p.P132del	ENST00000394830	NM_018313.4	132	CCT/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	286	751	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579378	7579378	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	197	696	0	ENST00000269305.4:c.309C>G	p.Tyr103Ter	p.Y103*	ENST00000269305	NM_001126112.2	103	taC/taG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	615	654	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	292	645	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	186	511	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	139	321	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	0	MSKCC	GRCh37	5	112137018	112137018	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	225	503	0	ENST00000257430.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000257430	NM_000038.5	258	Gag/Tag																																																																														
RYBP	0	MSKCC	GRCh37	3	72428194	72428194	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	239	544	0	ENST00000477973.2:c.696C>G	p.Ser233Ter	p.S233*	ENST00000477973	NM_012234.5	233	tCa/tGa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178379	56178379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	182	353	0	ENST00000399503.3:c.3352G>A	p.Glu1118Lys	p.E1118K	ENST00000399503	NM_005921.1	1118	Gag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112176396	112176396	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	103	270	0	ENST00000257430.4:c.5105G>C	p.Gly1702Ala	p.G1702A	ENST00000257430	NM_000038.5	1702	gGa/gCa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970962	21970971	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCGCAGG	CGCGCGCAGG	-			P-0025403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	537	588	0	ENST00000304494.5:c.387_396del	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taCCTGCGCGCG/ta																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970962	21970971	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCGCAGG	CGCGCGCAGG	-			P-0025403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	537	588	0	ENST00000304494.5:c.387_396del	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taCCTGCGCGCG/ta																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0025406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	150	719	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0025406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	122	322	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	181	816	3	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
MAPK3	0	MSKCC	GRCh37	16	30128020	30128020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1452	137	734	0	ENST00000263025.4:c.1109G>A	p.Arg370His	p.R370H	ENST00000263025	NM_002746.2	370	cGc/cAc																																																																														
PAK7	0	MSKCC	GRCh37	20	9561534	9561534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	178	709	0	ENST00000353224.5:c.248A>G	p.Asn83Ser	p.N83S	ENST00000353224	NM_177990.2	83	aAc/aGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	216	449	0				ENST00000310581	NM_198253.2																																																																																
ELF3	0	MSKCC	GRCh37	1	201983013	201983014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	392	791	0	ENST00000359651.3:c.863dup	p.Asn289GlnfsTer12	p.N289Qfs*12	ENST00000359651		288	ctc/cTtc																																																																														
FGF4	0	MSKCC	GRCh37	11	69589788	69589788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	5246	118	0	ENST00000168712.1:c.65C>T	p.Pro22Leu	p.P22L	ENST00000168712	NM_002007.2	22	cCc/cTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711878	89711879	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	31	411	1	ENST00000371953.3:c.497dup	p.Thr167AsnfsTer13	p.T167Nfs*13	ENST00000371953	NM_000314.4	166	gta/gTta																																																																														
PTEN	0	MSKCC	GRCh37	10	89717662	89717663	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	71	520	0	ENST00000371953.3:c.687_688del	p.Gly230ThrfsTer12	p.G230Tfs*12	ENST00000371953	NM_000314.4	229	tcAGga/tcga																																																																														
IRS2	0	MSKCC	GRCh37	13	110435097	110435097	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	257	464	0	ENST00000375856.3:c.3304A>G	p.Thr1102Ala	p.T1102A	ENST00000375856	NM_003749.2	1102	Acg/Gcg																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	265	535	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11094956	11094956	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	164	493	0	ENST00000344626.4:c.129G>C	p.Met43Ile	p.M43I	ENST00000344626	NM_003072.3	43	atG/atC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	61	523	0	ENST00000263967.3:c.3012G>T	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atT																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186503971	186503974	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0025408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	23	285	0	ENST00000323963.5:c.541_544delGTTT	p.Val181TrpfsTer8	p.V181Wfs*8	ENST00000323963		179	aTGTTt/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	79	600	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
DDR2	0	MSKCC	GRCh37	1	162729740	162729740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	67	511	0	ENST00000367921.3:c.826G>A	p.Asp276Asn	p.D276N	ENST00000367921	NM_006182.2	276	Gac/Aac																																																																														
LATS2	0	MSKCC	GRCh37	13	21619837	21619837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	69	342	0	ENST00000382592.4:c.329C>T	p.Ala110Val	p.A110V	ENST00000382592	NM_014572.2	110	gCa/gTa																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986876	36986877	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	37	143	0	ENST00000354822.5:c.812dup	p.Thr272HisfsTer167	p.T272Hfs*167	ENST00000354822	NM_001079668.2	271	ggc/ggGc																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986961	36986961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	44	325	2	ENST00000354822.5:c.728G>T	p.Arg243Leu	p.R243L	ENST00000354822	NM_001079668.2	243	cGc/cTc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59821865	59821865	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	71	644	0	ENST00000259008.2:c.2185G>T	p.Gly729Ter	p.G729*	ENST00000259008	NM_032043.2	729	Gga/Tga																																																																														
ABL1	0	MSKCC	GRCh37	9	133759495	133759496	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TT			P-0025409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	65	497	1	ENST00000318560.5:c.1818_1819delinsTT	p.Lys606_Lys607delinsAsnTer	p.K606_K607delinsN*	ENST00000318560	NM_005157.4	606	aaGAag/aaTTag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	28	700	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	48	628	1	ENST00000269305.4:c.592del	p.Glu198LysfsTer49	p.E198Kfs*49	ENST00000269305	NM_001126112.2	198	Gaa/aa																																																																														
KIT	0	MSKCC	GRCh37	4	55602909	55602909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	32	496	0	ENST00000288135.5:c.2619G>T	p.Met873Ile	p.M873I	ENST00000288135	NM_000222.2	873	atG/atT																																																																														
GATA3	0	MSKCC	GRCh37	10	8100403	8100403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	45	549	0	ENST00000346208.3:c.377C>A	p.Ser126Tyr	p.S126Y	ENST00000346208		126	tCc/tAc																																																																														
BTK	0	MSKCC	GRCh37	X	100613426	100613426	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	29	498	0	ENST00000308731.7:c.975-1G>T		p.X325_splice	ENST00000308731	NM_000061.2	325																																																																															
INPPL1	0	MSKCC	GRCh37	11	71942195	71942195	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	55	544	0	ENST00000298229.2:c.1463delG	p.Gly488AlafsTer43	p.G488Afs*43	ENST00000298229	NM_001567.3	487	Ggg/gg																																																																														
HGF	0	MSKCC	GRCh37	7	81355246	81355246	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	31	466	0	ENST00000222390.5:c.1128C>A	p.Tyr376Ter	p.Y376*	ENST00000222390	NM_000601.4	376	taC/taA																																																																														
NEGR1	0	MSKCC	GRCh37	1	72748153	72748153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	33	377	0	ENST00000357731.5:c.25G>T	p.Gly9Cys	p.G9C	ENST00000357731	NM_173808.2	9	Ggt/Tgt																																																																														
FGF3	0	MSKCC	GRCh37	11	69625222	69625222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	49	531	0	ENST00000334134.2:c.571G>T	p.Val191Leu	p.V191L	ENST00000334134	NM_005247.2	191	Gtg/Ttg																																																																														
RB1	0	MSKCC	GRCh37	13	49039144	49039144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	14	344	1	ENST00000267163.4:c.2222G>T	p.Arg741Leu	p.R741L	ENST00000267163	NM_000321.2	741	cGt/cTt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16004886	16004886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	50	535	0	ENST00000268712.3:c.2368G>T	p.Ala790Ser	p.A790S	ENST00000268712	NM_006311.3	790	Gct/Tct																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604780	48604780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	26	439	0	ENST00000342988.3:c.1602G>T	p.Gln534His	p.Q534H	ENST00000342988	NM_005359.5	534	caG/caT																																																																														
IRS1	0	MSKCC	GRCh37	2	227662653	227662653	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	28	444	0	ENST00000305123.5:c.802A>T	p.Ser268Cys	p.S268C	ENST00000305123	NM_005544.2	268	Agc/Tgc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252986	36252986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	39	459	0	ENST00000300305.3:c.376G>T	p.Asp126Tyr	p.D126Y	ENST00000300305		126	Gat/Tat																																																																														
INPP4B	0	MSKCC	GRCh37	4	143352400	143352400	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	39	577	1	ENST00000262992.4:c.13G>T	p.Glu5Ter	p.E5*	ENST00000262992	NM_001101669.1	5	Gag/Tag																																																																														
MDC1	0	MSKCC	GRCh37	6	30682891	30682891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	45	636	0	ENST00000376406.3:c.62G>T	p.Ser21Ile	p.S21I	ENST00000376406	NM_014641.2	21	aGt/aTt																																																																														
CARD11	0	MSKCC	GRCh37	7	2952954	2952954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	37	533	0	ENST00000396946.4:c.2986G>C	p.Gly996Arg	p.G996R	ENST00000396946	NM_032415.4	996	Gga/Cga																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38196095	38196095	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	28	707	1	ENST00000317025.8:c.706G>T	p.Glu236Ter	p.E236*	ENST00000317025	NM_023034.1	236	Gaa/Taa																																																																														
TEK	0	MSKCC	GRCh37	9	27203009	27203009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	39	607	0	ENST00000380036.4:c.2101G>T	p.Gly701Cys	p.G701C	ENST00000380036	NM_000459.3	701	Ggc/Tgc																																																																														
RBM10	0	MSKCC	GRCh37	X	47039305	47039305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	38	570	0	ENST00000329236.7:c.697C>T	p.His233Tyr	p.H233Y	ENST00000329236	NM_001204466.1	233	Cac/Tac																																																																														
RBM10	0	MSKCC	GRCh37	X	47044482	47044482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	33	532	0	ENST00000329236.7:c.1745G>C	p.Arg582Pro	p.R582P	ENST00000329236	NM_001204466.1	582	cGc/cCc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0025414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	409	522	0	ENST00000250448.2:c.754_774delAACATGTTCGAGAACGGCTGC	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-																																																																														
ATM	0	MSKCC	GRCh37	11	108199949	108199949	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0025414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	178	288	0	ENST00000278616.4:c.7291A>T	p.Lys2431Ter	p.K2431*	ENST00000278616	NM_000051.3	2431	Aaa/Taa																																																																														
ERF	0	MSKCC	GRCh37	19	42752815	42752826	+	inframe_deletion	In_Frame_Del	DEL	GCGTAGCTTGAG	GCGTAGCTTGAG	-			P-0025414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	122	767	0	ENST00000222329.4:c.1438_1449del	p.Leu480_Arg483del	p.L480_R483del	ENST00000222329	NM_006494.2	480	CTCAAGCTACGC/-																																																																														
ATRX	0	MSKCC	GRCh37	X	76940465	76940465	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	380	385	0	ENST00000373344.5:c.628A>T	p.Ser210Cys	p.S210C	ENST00000373344	NM_000489.3	210	Agc/Tgc																																																																														
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	83	537	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7980007	7980007	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147992320		P-0025436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	107	524	1	ENST00000319144.4:c.1330G>A	p.Val444Ile	p.V444I	ENST00000319144	NM_001139.2	444	Gtt/Att																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871129	12871129	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	37	182	0	ENST00000228872.4:c.357del	p.Ile119MetfsTer26	p.I119Mfs*26	ENST00000228872	NM_004064.3	119	aTt/at																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106352	27106352	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	90	413	0	ENST00000324856.7:c.5963T>G	p.Ile1988Ser	p.I1988S	ENST00000324856	NM_006015.4	1988	aTt/aGt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59761072	59761072	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	121	501	0	ENST00000259008.2:c.3335A>T	p.Asp1112Val	p.D1112V	ENST00000259008	NM_032043.2	1112	gAt/gTt																																																																														
MSH2	0	MSKCC	GRCh37	2	47702178	47702178	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	68	327	0	ENST00000233146.2:c.1774A>G	p.Met592Val	p.M592V	ENST00000233146	NM_000251.2	592	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	51	605	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	43	532	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0025438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	35	447	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	31	392	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																																																														
CARD11	0	MSKCC	GRCh37	7	2962298	2962298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146394338		P-0025438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	55	695	1	ENST00000396946.4:c.2239G>A	p.Val747Ile	p.V747I	ENST00000396946	NM_032415.4	747	Gtc/Atc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	302	568	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	164	239	0				ENST00000310581	NM_198253.2																																																																																
BRAF	0	MSKCC	GRCh37	7	140453135	140453136	+	missense_variant	Missense_Mutation	DNP	CA	CA	TT			P-0025441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	227	514	0	ENST00000288602.6:c.1799_1800delTGinsAA	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTG/gAA																																																																														
CALR	0	MSKCC	GRCh37	19	13050277	13050277	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	280	481	0	ENST00000316448.5:c.229C>G	p.Leu77Val	p.L77V	ENST00000316448	NM_004343.3	77	Ctg/Gtg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	15	468	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	22	608	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	96	714	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52723440	52723440	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	72	512	2	ENST00000322088.6:c.1303-2A>T		p.X435_splice	ENST00000322088	NM_014225.5	435																																																																															
MAP3K13	0	MSKCC	GRCh37	3	185191326	185191326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	73	471	1	ENST00000265026.3:c.2207G>T	p.Arg736Met	p.R736M	ENST00000265026	NM_004721.4	736	aGg/aTg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66535412	66535412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	22	204	0	ENST00000273854.3:c.49G>T	p.Gly17Cys	p.G17C	ENST00000273854	NM_004439.5	17	Ggc/Tgc																																																																														
MDC1	0	MSKCC	GRCh37	6	30681090	30681090	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61754764		P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	58	397	2	ENST00000376406.3:c.629C>T	p.Pro210Leu	p.P210L	ENST00000376406	NM_014641.2	210	cCg/cTg																																																																														
SOX17	0	MSKCC	GRCh37	8	55372038	55372038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	51	407	0	ENST00000297316.4:c.728G>T	p.Gly243Val	p.G243V	ENST00000297316	NM_022454.3	243	gGg/gTg																																																																														
PAX5	0	MSKCC	GRCh37	9	37015085	37015085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	124	649	0	ENST00000358127.4:c.319C>A	p.Pro107Thr	p.P107T	ENST00000358127	NM_001280556.1	107	Ccc/Acc																																																																														
IRS2	0	MSKCC	GRCh37	13	110435972	110435972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	98	473	0	ENST00000375856.3:c.2429A>G	p.Tyr810Cys	p.Y810C	ENST00000375856	NM_003749.2	810	tAc/tGc																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073904	8073904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	42	309	0	ENST00000377482.5:c.755G>T	p.Gly252Val	p.G252V	ENST00000377482	NM_018948.3	252	gGa/gTa																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074022	8074022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	27	261	0	ENST00000377482.5:c.637G>A	p.Asp213Asn	p.D213N	ENST00000377482	NM_018948.3	213	Gat/Aat																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057652	27057653	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0025447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	113	357	0	ENST00000324856.7:c.1361dup	p.Tyr454Ter	p.Y454*	ENST00000324856	NM_006015.4	454	tat/tAat																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643710	38643710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	199	523	1	ENST00000299084.4:c.1180G>A	p.Asp394Asn	p.D394N	ENST00000299084	NM_152594.2	394	Gac/Aac																																																																														
VHL	0	MSKCC	GRCh37	3	10191563	10191563	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	147	375	0	ENST00000256474.2:c.556del	p.Glu186LysfsTer16	p.E186Kfs*16	ENST00000256474	NM_000551.3	186	Gaa/aa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52597490	52597490	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	140	313	0	ENST00000394830.3:c.3820A>T	p.Lys1274Ter	p.K1274*	ENST00000394830	NM_018313.4	1274	Aag/Tag																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967185	93967185	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	137	476	0	ENST00000369303.4:c.2167C>G	p.Leu723Val	p.L723V	ENST00000369303	NM_004440.3	723	Ctc/Gtc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	59	556	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	40	401	0	ENST00000399503.3:c.819_820delAG	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																																																														
CBFB	0	MSKCC	GRCh37	16	67063684	67063684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	12	297	1	ENST00000412916.2:c.133C>T	p.Gln45Ter	p.Q45*	ENST00000412916		45	Cag/Tag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161703	56161704	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	49	585	0	ENST00000399503.3:c.1203dup	p.Ala402SerfsTer5	p.A402Sfs*5	ENST00000399503	NM_005921.1	400	-/A																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	446	570	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	673	578	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0025610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	368	399	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	349	231	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30133009	30133009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	459	518	3	ENST00000331968.5:c.592G>A	p.Gly198Ser	p.G198S	ENST00000331968	NM_002742.2	198	Ggt/Agt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	40	323	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	77	661	6	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	69	819	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
DNMT1	0	MSKCC	GRCh37	19	10260241	10260241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	144	815	1	ENST00000340748.4:c.2426C>T	p.Ser809Leu	p.S809L	ENST00000340748		809	tCg/tTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187521299	187521299	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	69	747	2	ENST00000441802.2:c.11856delT	p.Phe3952LeufsTer31	p.F3952Lfs*31	ENST00000441802	NM_005245.3	3952	ttT/tt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	145	969	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	67	390	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
CDC73	0	MSKCC	GRCh37	1	193107258	193107258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	45	382	0	ENST00000367435.3:c.467G>A	p.Arg156His	p.R156H	ENST00000367435	NM_024529.4	156	cGt/cAt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78811795	78811795	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	44	576	0	ENST00000306801.3:c.1210C>T	p.Arg404Trp	p.R404W	ENST00000306801	NM_020761.2	404	Cgg/Tgg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	53	461	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
NF1	0	MSKCC	GRCh37	17	29576098	29576098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	89	716	0	ENST00000358273.4:c.4076del	p.Pro1359LeufsTer19	p.P1359Lfs*19	ENST00000358273	NM_001042492.2	1357	ttC/tt																																																																														
ATM	0	MSKCC	GRCh37	11	108224583	108224583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	50	330	1	ENST00000278616.4:c.8762C>T	p.Thr2921Met	p.T2921M	ENST00000278616	NM_000051.3	2921	aCg/aTg																																																																														
RFWD2	0	MSKCC	GRCh37	1	175957465	175957465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	65	552	0	ENST00000367669.3:c.1931del	p.Asn644ThrfsTer3	p.N644Tfs*3	ENST00000367669	NM_022457.5	644	aAc/ac																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67588972	67588972	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	48	412	0	ENST00000274335.5:c.1067delT	p.Leu356TrpfsTer17	p.L356Wfs*17	ENST00000274335		355	Ttt/tt																																																																														
ATM	472	MSKCC	GRCh37	11	108235935	108235935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs770641163		P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	60	430	1	ENST00000278616.4:c.8977C>T	p.Arg2993Ter	p.R2993*	ENST00000278616	NM_000051.3	2993	Cga/Tga																																																																														
MSH6	0	MSKCC	GRCh37	2	48030631	48030631	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs191109849		P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	85	574	2	ENST00000234420.5:c.3245C>T	p.Pro1082Leu	p.P1082L	ENST00000234420	NM_000179.2	1082	cCg/cTg																																																																														
YAP1	10413	MSKCC	GRCh37	11	101981721	101981721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	43	407	3	ENST00000282441.5:c.147del	p.Ala50ProfsTer24	p.A50Pfs*24	ENST00000282441	NM_001130145.2	48	Ccc/cc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	103	873	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	213	792	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209593	98209593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	101	647	1	ENST00000331920.6:c.3945del	p.Tyr1316ThrfsTer56	p.Y1316Tfs*56	ENST00000331920	NM_000264.3	1315	ccC/cc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468398	89468398	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	40	253	0	ENST00000336596.2:c.1938delA	p.Glu647ArgfsTer9	p.E647Rfs*9	ENST00000336596	NM_005233.5	644	tcA/tc																																																																														
MYC	0	MSKCC	GRCh37	8	128750678	128750678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	86	689	0	ENST00000377970.2:c.215C>A	p.Pro72His	p.P72H	ENST00000377970	NM_002467.4	72	cCc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	127	936	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
IGF1R	0	MSKCC	GRCh37	15	99478220	99478220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	80	469	0	ENST00000268035.6:c.3124C>T	p.Arg1042Cys	p.R1042C	ENST00000268035	NM_000875.3	1042	Cgt/Tgt																																																																														
IGF1R	3480	MSKCC	GRCh37	15	99500476	99500476	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	97	776	0	ENST00000268035.6:c.3913del	p.Leu1305TrpfsTer45	p.L1305Wfs*45	ENST00000268035	NM_000875.3	1303	gtC/gt																																																																														
ALK	0	MSKCC	GRCh37	2	29606678	29606678	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188859061		P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	105	743	2	ENST00000389048.3:c.1202G>A	p.Arg401Gln	p.R401Q	ENST00000389048	NM_004304.4	401	cGa/cAa																																																																														
MYCL1	0	MSKCC	GRCh37	1	40363141	40363141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	51	618	0	ENST00000397332.2:c.1088T>C	p.Leu363Pro	p.L363P	ENST00000397332	NM_001033082.2	363	cTg/cCg																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798843	45798843	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	121	696	0	ENST00000372115.3:c.347-1G>C		p.X116_splice	ENST00000372115	NM_001048171.1	116																																																																															
CSDE1	0	MSKCC	GRCh37	1	115268911	115268911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	93	735	0	ENST00000438362.2:c.1699G>A	p.Gly567Ser	p.G567S	ENST00000438362	NM_001242891.1	567	Ggt/Agt																																																																														
GATA3	0	MSKCC	GRCh37	10	8100690	8100690	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	136	966	1	ENST00000346208.3:c.664T>C	p.Tyr222His	p.Y222H	ENST00000346208		222	Tac/Cac																																																																														
INPPL1	0	MSKCC	GRCh37	11	71944697	71944697	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	96	916	0	ENST00000298229.2:c.2123-2A>C		p.X708_splice	ENST00000298229	NM_001567.3	708																																																																															
PGR	0	MSKCC	GRCh37	11	100998342	100998342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	12	33	0	ENST00000325455.5:c.1460G>A	p.Gly487Asp	p.G487D	ENST00000325455	NM_001202474.3	487	gGc/gAc																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871836	35871836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	90	624	0	ENST00000216797.5:c.670G>A	p.Ala224Thr	p.A224T	ENST00000216797	NM_020529.2	224	Gca/Aca																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060587	38060587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1258	137	1095	1	ENST00000250448.2:c.1402G>A	p.Val468Ile	p.V468I	ENST00000250448	NM_004496.3	468	Gtc/Atc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59871029	59871029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	87	671	0	ENST00000259008.2:c.1402T>C	p.Trp468Arg	p.W468R	ENST00000259008	NM_032043.2	468	Tgg/Cgg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575053	48575054	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	28	377	0	ENST00000342988.3:c.250-2dup		p.X84_splice	ENST00000342988	NM_005359.5	84																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11098425	11098425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	135	621	2	ENST00000344626.4:c.947del	p.Pro316LeufsTer10	p.P316Lfs*10	ENST00000344626	NM_003072.3	315	Ccc/cc																																																																														
CCNE1	0	MSKCC	GRCh37	19	30314638	30314638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	109	697	1	ENST00000262643.3:c.1187C>T	p.Pro396Leu	p.P396L	ENST00000262643	NM_001238.2	396	cCg/cTg																																																																														
SOS1	0	MSKCC	GRCh37	2	39249914	39249914	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	96	840	0	ENST00000402219.2:c.1655G>T	p.Arg552Met	p.R552M	ENST00000402219	NM_005633.3	552	aGg/aTg																																																																														
IDH1	0	MSKCC	GRCh37	2	209116180	209116180	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	63	568	0	ENST00000345146.2:c.96del	p.Tyr34ThrfsTer11	p.Y34Tfs*11	ENST00000345146	NM_005896.2	32	ttT/tt																																																																														
MYD88	0	MSKCC	GRCh37	3	38181894	38181894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	46	345	0	ENST00000396334.3:c.518G>A	p.Arg173His	p.R173H	ENST00000396334	NM_002468.4	173	cGt/cAt																																																																														
MST1R	0	MSKCC	GRCh37	3	49939983	49939983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	73	820	0	ENST00000296474.3:c.1060A>G	p.Lys354Glu	p.K354E	ENST00000296474	NM_002447.2	354	Aag/Gag																																																																														
TAP2	0	MSKCC	GRCh37	6	32805327	32805327	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	120	441	0	ENST00000374899.4:c.595T>C	p.Phe199Leu	p.F199L	ENST00000374899	NM_018833.2	199	Ttc/Ctc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	209	499	0				ENST00000310581	NM_198253.2																																																																																
SMARCA4	0	MSKCC	GRCh37	19	11123691	11123691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	347	704	0	ENST00000344626.4:c.2341A>G	p.Met781Val	p.M781V	ENST00000344626	NM_003072.3	781	Atg/Gtg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3843521	3843523	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0025357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	331	576	1	ENST00000262367.5:c.1080_1082del	p.Leu362del	p.L362del	ENST00000262367	NM_004380.2	360	ctACTg/ctg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	71	734	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36208923	36208925	+	start_lost,inframe_deletion	Translation_Start_Site	DEL	GGC	GGC	-			P-0025359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	10	52	0	ENST00000222270.7:c.14_16del	p.Ala5del	p.A5del	ENST00000222270	NM_014727.1	1	atGGCg/atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	263	652	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	251	700	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CSDE1	0	MSKCC	GRCh37	1	115280099	115280099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	146	590	1	ENST00000438362.2:c.533G>T	p.Arg178Leu	p.R178L	ENST00000438362	NM_001242891.1	178	cGt/cTt																																																																														
PTPRT	0	MSKCC	GRCh37	20	41400157	41400157	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	201	611	0	ENST00000373198.4:c.602T>C	p.Val201Ala	p.V201A	ENST00000373198	NM_133170.3	201	gTg/gCg																																																																														
TET2	0	MSKCC	GRCh37	4	106193892	106193892	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	152	320	1	ENST00000380013.4:c.4354C>T	p.Arg1452Ter	p.R1452*	ENST00000380013	NM_001127208.2	1452	Cga/Tga																																																																														
FAM58A	0	MSKCC	GRCh37	X	152853898	152853898	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	187	282	0	ENST00000406277.2:c.666C>A	p.Asp222Glu	p.D222E	ENST00000406277	NM_152274.4	222	gaC/gaA																																																																														
AKT1	0	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	425	565	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																														
CTCF	0	MSKCC	GRCh37	16	67663317	67663317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	246	590	0	ENST00000264010.4:c.1718A>G	p.His573Arg	p.H573R	ENST00000264010	NM_006565.3	573	cAt/cGt																																																																														
GATA3	0	MSKCC	GRCh37	10	8111511	8111511	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	259	698	0	ENST00000346208.3:c.998del	p.Asn333MetfsTer22	p.N333Mfs*22	ENST00000346208		333	Aat/at																																																																														
RUNX1	0	MSKCC	GRCh37	21	36231830	36231830	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	265	642	0	ENST00000300305.3:c.554A>C	p.Gln185Pro	p.Q185P	ENST00000300305		185	cAa/cCa																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540213	23540214	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTCTGG			P-0025367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	55	287	0	ENST00000380871.4:c.184_189dup	p.Pro62_Glu63dup	p.P62_E63dup	ENST00000380871	NM_006167.3	62	-/CCAGAG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	33	627	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	49	667	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
RTEL1	0	MSKCC	GRCh37	20	62325754	62325754	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145335410		P-0025387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	68	500	0	ENST00000508582.2:c.3094G>A	p.Val1032Met	p.V1032M	ENST00000508582		1032	Gtg/Atg																																																																														
RBM10	0	MSKCC	GRCh37	X	47039620	47039620	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	48	256	1	ENST00000329236.7:c.838C>T	p.Gln280Ter	p.Q280*	ENST00000329236	NM_001204466.1	280	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0025392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	83	414	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
FYN	0	MSKCC	GRCh37	6	112035608	112035608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	117	630	1	ENST00000368678.4:c.286C>T	p.Arg96Trp	p.R96W	ENST00000368678		96	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	562	891	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	158	472	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974776	21974776	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	33	292	0	ENST00000304494.5:c.51del	p.Thr18ArgfsTer8	p.T18Rfs*8	ENST00000304494	NM_000077.4	17	gcC/gc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974776	21974776	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	33	292	0	ENST00000304494.5:c.51del	p.Thr18ArgfsTer8	p.T18Rfs*8	ENST00000304494	NM_000077.4	17	gcC/gc																																																																														
STK40	0	MSKCC	GRCh37	1	36807390	36807390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	125	860	2	ENST00000373129.3:c.1274C>T	p.Thr425Met	p.T425M	ENST00000373129	NM_032017.1	425	aCg/aTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187541636	187541636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	75	460	0	ENST00000441802.2:c.6104C>A	p.Thr2035Asn	p.T2035N	ENST00000441802	NM_005245.3	2035	aCt/aAt																																																																														
PREX2	0	MSKCC	GRCh37	8	68995602	68995602	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	194	694	0	ENST00000288368.4:c.2006T>C	p.Leu669Pro	p.L669P	ENST00000288368	NM_024870.2	669	cTt/cCt																																																																														
ATRX	0	MSKCC	GRCh37	X	76909656	76909656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	116	310	2	ENST00000373344.5:c.4249C>T	p.Arg1417Trp	p.R1417W	ENST00000373344	NM_000489.3	1417	Cgg/Tgg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0025398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	42	603	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	629	742	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	366	534	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55155052	55155052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	91	515	3	ENST00000257290.5:c.2761G>A	p.Ala921Thr	p.A921T	ENST00000257290	NM_006206.4	921	Gct/Act																																																																														
RAD50	0	MSKCC	GRCh37	5	131953926	131953926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	137	517	0	ENST00000265335.6:c.3329T>A	p.Val1110Asp	p.V1110D	ENST00000265335		1110	gTt/gAt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922668	44922669	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TC			P-0025400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	249	195	0	ENST00000377967.4:c.1529_1530insTC	p.Met510IlefsTer39	p.M510Ifs*39	ENST00000377967	NM_021140.2	510	atg/atTCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	59	779	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
GATA3	0	MSKCC	GRCh37	10	8100575	8100575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	157	732	0	ENST00000346208.3:c.549C>A	p.Cys183Ter	p.C183*	ENST00000346208		183	tgC/tgA																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431750	49431750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	78	710	1	ENST00000301067.7:c.9389C>T	p.Ser3130Phe	p.S3130F	ENST00000301067	NM_003482.3	3130	tCt/tTt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18278040	18278040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	91	794	0	ENST00000222254.8:c.1660A>G	p.Arg554Gly	p.R554G	ENST00000222254	NM_005027.3	554	Aga/Gga																																																																														
FAT1	0	MSKCC	GRCh37	4	187549412	187549412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	81	785	0	ENST00000441802.2:c.4706G>T	p.Gly1569Val	p.G1569V	ENST00000441802	NM_005245.3	1569	gGg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001242-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			394	297	547	0	ENST00000269305.4:c.736del	p.Met246Ter	p.M246*	ENST00000269305	NM_001126112.2	246	Atg/tg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670327	134670327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001242-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			639	96	339	1	ENST00000398015.3:c.238C>T	p.Arg80Trp	p.R80W	ENST00000398015	NM_004441.4	80	Cgg/Tgg																																																																														
SOX17	0	MSKCC	GRCh37	8	55371995	55371995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001242-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			1455	116	554	0	ENST00000297316.4:c.685G>A	p.Gly229Ser	p.G229S	ENST00000297316	NM_022454.3	229	Ggc/Agc																																																																														
LATS1	0	MSKCC	GRCh37	6	149983229	149983229	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001242-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			780	64	397	0	ENST00000253339.5:c.3029T>G	p.Phe1010Cys	p.F1010C	ENST00000253339		1010	tTt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0025318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	30	588	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	134	369	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																																																														
FLT3	0	MSKCC	GRCh37	13	28588651	28588651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	160	497	1	ENST00000241453.7:c.2797C>T	p.Arg933Trp	p.R933W	ENST00000241453	NM_004119.2	933	Cgg/Tgg																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40678685	40678685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	113	383	0	ENST00000249776.8:c.427C>T	p.Arg143Ter	p.R143*	ENST00000249776	NM_033286.3	143	Cga/Tga																																																																														
BCL10	0	MSKCC	GRCh37	1	85742008	85742008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	254	469	0	ENST00000370580.1:c.28G>A	p.Glu10Lys	p.E10K	ENST00000370580	NM_003921.4	10	Gag/Aag																																																																														
ELF3	0	MSKCC	GRCh37	1	201982975	201982975	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	251	481	0	ENST00000359651.3:c.824T>C	p.Leu275Pro	p.L275P	ENST00000359651		275	cTg/cCg																																																																														
RET	0	MSKCC	GRCh37	10	43610019	43610019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	285	569	0	ENST00000355710.3:c.1971C>G	p.Ile657Met	p.I657M	ENST00000355710	NM_020975.4	657	atC/atG																																																																														
LMO1	0	MSKCC	GRCh37	11	8246213	8246213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	162	447	0	ENST00000335790.3:c.421G>A	p.Asp141Asn	p.D141N	ENST00000335790	NM_002315.2	141	Gac/Aac																																																																														
SDHAF2	0	MSKCC	GRCh37	11	61205233	61205233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	226	568	0	ENST00000301761.2:c.173G>C	p.Arg58Thr	p.R58T	ENST00000301761	NM_017841.2	58	aGa/aCa																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50488271	50488271	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	216	625	0	ENST00000394963.4:c.1185A>C	p.Glu395Asp	p.E395D	ENST00000394963	NM_003076.4	395	gaA/gaC																																																																														
MDM2	0	MSKCC	GRCh37	12	69218378	69218378	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	260	568	0	ENST00000462284.1:c.470A>G	p.His157Arg	p.H157R	ENST00000462284	NM_002392.5	157	cAt/cGt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112303	115112303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	66	148	0	ENST00000257566.3:c.1437C>A	p.Phe479Leu	p.F479L	ENST00000257566	NM_016569.3	479	ttC/ttA																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914857	32914857	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	187	538	0	ENST00000380152.3:c.6365T>C	p.Met2122Thr	p.M2122T	ENST00000380152		2122	aTg/aCg																																																																														
DIS3	0	MSKCC	GRCh37	13	73335933	73335933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	219	378	1	ENST00000377767.4:c.2362C>T	p.His788Tyr	p.H788Y	ENST00000377767	NM_014953.3	788	Cat/Tat																																																																														
GREM1	0	MSKCC	GRCh37	15	33023120	33023120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	84	328	0	ENST00000300177.4:c.229A>G	p.Ser77Gly	p.S77G	ENST00000300177	NM_001191322.1	77	Agc/Ggc																																																																														
CTCF	0	MSKCC	GRCh37	16	67654704	67654717	+	frameshift_variant	Frame_Shift_Del	DEL	CATGAGAACCCATT	CATGAGAACCCATT	-			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	164	531	0	ENST00000264010.4:c.1193_1206del	p.Met398ArgfsTer6	p.M398Rfs*6	ENST00000264010	NM_006565.3	397	caCATGAGAACCCATTca/caca																																																																														
GPS2	0	MSKCC	GRCh37	17	7217617	7217617	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	215	408	0	ENST00000380728.2:c.310G>T	p.Glu104Ter	p.E104*	ENST00000380728		104	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578522	7578522	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	340	575	0	ENST00000269305.4:c.408A>C	p.Gln136His	p.Q136H	ENST00000269305	NM_001126112.2	136	caA/caC																																																																														
TP53	0	MSKCC	GRCh37	17	7578539	7578539	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	327	569	0	ENST00000269305.4:c.391A>G	p.Asn131Asp	p.N131D	ENST00000269305	NM_001126112.2	131	Aac/Gac																																																																														
BRIP1	0	MSKCC	GRCh37	17	59760725	59760725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	605	760	0	ENST00000259008.2:c.3682G>A	p.Glu1228Lys	p.E1228K	ENST00000259008	NM_032043.2	1228	Gaa/Aaa																																																																														
CALR	0	MSKCC	GRCh37	19	13050425	13050425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	209	433	0	ENST00000316448.5:c.377C>T	p.Ser126Leu	p.S126L	ENST00000316448	NM_004343.3	126	tCa/tTa																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18274088	18274088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	206	444	0	ENST00000222254.8:c.1306G>C	p.Glu436Gln	p.E436Q	ENST00000222254	NM_005027.3	436	Gag/Cag																																																																														
ERCC2	0	MSKCC	GRCh37	19	45873425	45873425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	180	451	0	ENST00000391945.4:c.71A>G	p.Tyr24Cys	p.Y24C	ENST00000391945	NM_000400.3	24	tAc/tGc																																																																														
POLD1	0	MSKCC	GRCh37	19	50921148	50921148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	317	493	0	ENST00000440232.2:c.3268G>A	p.Glu1090Lys	p.E1090K	ENST00000440232	NM_002691.3	1090	Gaa/Aaa																																																																														
ALK	0	MSKCC	GRCh37	2	30143370	30143370	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	191	353	0	ENST00000389048.3:c.156G>C	p.Lys52Asn	p.K52N	ENST00000389048	NM_004304.4	52	aaG/aaC																																																																														
SOS1	0	MSKCC	GRCh37	2	39262364	39262364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	163	559	0	ENST00000402219.2:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000402219	NM_005633.3	355	Gaa/Aaa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198270190	198270190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	169	313	0	ENST00000335508.6:c.1246C>T	p.Pro416Ser	p.P416S	ENST00000335508	NM_012433.2	416	Cct/Tct																																																																														
ERBB4	0	MSKCC	GRCh37	2	212587193	212587193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	112	511	0	ENST00000342788.4:c.808C>T	p.Pro270Ser	p.P270S	ENST00000342788	NM_005235.2	270	Cca/Tca																																																																														
IRS1	0	MSKCC	GRCh37	2	227661578	227661578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	253	496	0	ENST00000305123.5:c.1877G>A	p.Arg626Gln	p.R626Q	ENST00000305123	NM_005544.2	626	cGa/cAa																																																																														
TOP1	0	MSKCC	GRCh37	20	39708750	39708750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	208	648	0	ENST00000361337.2:c.361G>A	p.Glu121Lys	p.E121K	ENST00000361337	NM_003286.2	121	Gaa/Aaa																																																																														
MAPK1	0	MSKCC	GRCh37	22	22162107	22162107	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	197	407	0	ENST00000215832.6:c.148C>G	p.Arg50Gly	p.R50G	ENST00000215832	NM_002745.4	50	Cga/Gga																																																																														
NF2	0	MSKCC	GRCh37	22	30051631	30051648	+	inframe_deletion	In_Frame_Del	DEL	ACTGCTTGGTACGCAGAG	ACTGCTTGGTACGCAGAG	-			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	49	412	0	ENST00000338641.4:c.565_582del	p.Thr189_Glu194del	p.T189_E194del	ENST00000338641	NM_000268.3	189	ACTGCTTGGTACGCAGAG/-																																																																														
NF2	0	MSKCC	GRCh37	22	30074296	30074296	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	194	436	2	ENST00000338641.4:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000338641	NM_000268.3	520	Gag/Tag																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	162	356	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																														
GSK3B	0	MSKCC	GRCh37	3	119642300	119642300	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	212	574	0	ENST00000316626.5:c.397G>C	p.Asp133His	p.D133H	ENST00000316626		133	Gac/Cac																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186501400	186501400	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	110	282	0	ENST00000323963.5:c.1A>G	p.Met1?	p.M1?	ENST00000323963		1	Atg/Gtg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247252	153247252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	118	452	0	ENST00000281708.4:c.1550G>A	p.Gly517Glu	p.G517E	ENST00000281708	NM_033632.3	517	gGa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	107	288	0				ENST00000310581	NM_198253.2																																																																																
PDGFRB	0	MSKCC	GRCh37	5	149509431	149509431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	175	516	0	ENST00000261799.4:c.1468G>A	p.Glu490Lys	p.E490K	ENST00000261799	NM_002609.3	490	Gag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169159	32169159	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	94	478	0	ENST00000375023.3:c.3874G>C	p.Glu1292Gln	p.E1292Q	ENST00000375023	NM_004557.3	1292	Gag/Cag																																																																														
PMS2	0	MSKCC	GRCh37	7	6043660	6043660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	110	451	0	ENST00000265849.7:c.193C>T	p.Leu65Phe	p.L65F	ENST00000265849	NM_000535.5	65	Ctt/Ttt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249028	55249028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	37	435	0	ENST00000275493.2:c.2326C>G	p.Arg776Gly	p.R776G	ENST00000275493	NM_005228.3	776	Cgc/Ggc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44833957	44833957	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	232	323	0	ENST00000377967.4:c.381G>A	p.Trp127Ter	p.W127*	ENST00000377967	NM_021140.2	127	tgG/tgA																																																																														
FANCA	0	MSKCC	GRCh37	16	89858416	89858416	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	209	522	0	ENST00000389301.3:c.1144C>T	p.Gln382Ter	p.Q382*	ENST00000389301	NM_000135.2	382	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0025341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	78	797	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
ATM	0	MSKCC	GRCh37	11	108236104	108236104	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	29	648	0	ENST00000278616.4:c.9040C>T	p.Gln3014Ter	p.Q3014*	ENST00000278616	NM_000051.3	3014	Caa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	69	575	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0025346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	41	554	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	360	757	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	230	432	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
NF1	0	MSKCC	GRCh37	17	29665144	29665144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	402	658	1	ENST00000358273.4:c.6806G>A	p.Arg2269His	p.R2269H	ENST00000358273	NM_001042492.2	2269	cGt/cAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928067	178928067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	347	664	0	ENST00000263967.3:c.1345C>T	p.Pro449Ser	p.P449S	ENST00000263967	NM_006218.2	449	Cct/Tct																																																																														
JUN	0	MSKCC	GRCh37	1	59248014	59248015	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACA			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	284	580	0	ENST00000371222.2:c.725_728dup	p.Pro244ValfsTer67	p.P244Vfs*67	ENST00000371222	NM_002228.3	243	tcc/tcTGTCc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166148	118166148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	123	473	0	ENST00000369448.3:c.658G>A	p.Glu220Lys	p.E220K	ENST00000369448	NM_017709.3	220	Gag/Aag																																																																														
MGA	0	MSKCC	GRCh37	15	41988400	41988400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	179	609	0	ENST00000219905.7:c.1192G>C	p.Glu398Gln	p.E398Q	ENST00000219905	NM_001164273.1	398	Gaa/Caa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265915	41266316	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATA	TATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATA	-			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	38	57	0	ENST00000349496.5:c.14-102_241+72del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
PIK3CG	0	MSKCC	GRCh37	7	106545721	106545721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	354	685	1	ENST00000359195.3:c.3198G>T	p.Lys1066Asn	p.K1066N	ENST00000359195	NM_002649.2	1066	aaG/aaT																																																																														
RAD21	0	MSKCC	GRCh37	8	117868953	117868953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	73	574	0	ENST00000297338.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000297338	NM_006265.2	249	tCt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	383	516	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0025352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	170	506	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942562	71942562	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	118	488	0	ENST00000298229.2:c.1518G>A	p.Trp506Ter	p.W506*	ENST00000298229	NM_001567.3	506	tgG/tgA																																																																														
CD276	0	MSKCC	GRCh37	15	73996111	73996111	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	47	689	0	ENST00000318443.5:c.845A>G	p.Asn282Ser	p.N282S	ENST00000318443	NM_001024736.1	282	aAc/aGc																																																																														
CDH1	0	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0025353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	127	421	0	ENST00000261769.5:c.1565+1del		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																															
PTEN	0	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006424-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			407	45	580	1	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056160	27056160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006424-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			873	86	451	0	ENST00000324856.7:c.1156C>T	p.Gln386Ter	p.Q386*	ENST00000324856	NM_006015.4	386	Cag/Tag																																																																														
RHOA	0	MSKCC	GRCh37	3	49412958	49412958	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006424-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1543	205	780	0	ENST00000418115.1:c.65T>G	p.Leu22Arg	p.L22R	ENST00000418115	NM_001664.2	22	cTc/cGc																																																																														
CBFB	0	MSKCC	GRCh37	16	67100584	67100584	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006424-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			667	127	474	0	ENST00000412916.2:c.283-1G>A		p.X95_splice	ENST00000412916		95																																																																															
CDH1	0	MSKCC	GRCh37	16	68862203	68862204	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006424-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			838	159	526	0	ENST00000261769.5:c.2293dupC	p.Gln765ProfsTer4	p.Q765Pfs*4	ENST00000261769	NM_004360.3	764	gac/gaCc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273093	18273093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006424-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1354	209	653	0	ENST00000222254.8:c.983C>T	p.Ala328Val	p.A328V	ENST00000222254	NM_005027.3	328	gCt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	7	522	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	17	439	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	294	620	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
SPEN	0	MSKCC	GRCh37	1	16262604	16262604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	32	346	0	ENST00000375759.3:c.9869C>A	p.Thr3290Asn	p.T3290N	ENST00000375759	NM_015001.2	3290	aCc/aAc																																																																														
STK40	0	MSKCC	GRCh37	1	36820827	36820827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	77	491	0	ENST00000373129.3:c.550G>C	p.Val184Leu	p.V184L	ENST00000373129	NM_032017.1	184	Gtg/Ctg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061178	38061185	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	GCTTCTCG	GCTTCTCG	-			P-0025329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	90	405	1	ENST00000250448.2:c.804_811del	p.Cys268Ter	p.C268*	ENST00000250448	NM_004496.3	268	tgCGAGAAGCag/tgag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696434	47696434	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	112	591	0	ENST00000347630.2:c.389A>T	p.Asp130Val	p.D130V	ENST00000347630	NM_001007230.1	130	gAc/gTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	144	421	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CBL	0	MSKCC	GRCh37	11	119170291	119170291	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	28	317	1	ENST00000264033.4:c.2521C>T	p.Gln841Ter	p.Q841*	ENST00000264033	NM_005188.3	841	Cag/Tag																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870982	12870992	+	frameshift_variant	Frame_Shift_Del	DEL	TAGAGGGCAAG	TAGAGGGCAAG	-			P-0025333-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	116	364	0	ENST00000228872.4:c.211_221del	p.Glu71ArgfsTer50	p.E71Rfs*50	ENST00000228872	NM_004064.3	70	cTAGAGGGCAAG/c																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	85	450	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164754	36164773	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGAGCCCATGGCCGACAT	GCCGAGCCCATGGCCGACAT	-			P-0025334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	89	385	0	ENST00000300305.3:c.1102_1121del	p.Met368HisfsTer225	p.M368Hfs*225	ENST00000300305		368	ATGTCGGCCATGGGCTCGGCc/c																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1345	98	785	1	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
RIT1	0	MSKCC	GRCh37	1	155874287	155874287	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1086	74	604	0	ENST00000368323.3:c.244T>C	p.Phe82Leu	p.F82L	ENST00000368323	NM_006912.5	82	Ttt/Ctt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	198	646	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	103	616	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	75	382	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg																																																																														
DDR2	0	MSKCC	GRCh37	1	162731172	162731172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	260	449	3	ENST00000367921.3:c.1027G>T	p.Ala343Ser	p.A343S	ENST00000367921	NM_006182.2	343	Gcc/Tcc																																																																														
FGF4	0	MSKCC	GRCh37	11	69589632	69589633	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	69	334	1	ENST00000168712.1:c.220_221delinsTT	p.Gly74Phe	p.G74F	ENST00000168712	NM_002007.2	74	GGc/TTc																																																																														
PGR	0	MSKCC	GRCh37	11	100909941	100909941	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	51	606	0	ENST00000325455.5:c.2708T>C	p.Val903Ala	p.V903A	ENST00000325455	NM_001202474.3	903	gTt/gCt																																																																														
DIS3	0	MSKCC	GRCh37	13	73335854	73335854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	133	510	0	ENST00000377767.4:c.2441G>T	p.Cys814Phe	p.C814F	ENST00000377767	NM_014953.3	814	tGt/tTt																																																																														
STK11	0	MSKCC	GRCh37	19	1220405	1220405	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	181	643	0	ENST00000326873.7:c.498C>G	p.Tyr166Ter	p.Y166*	ENST00000326873	NM_000455.4	166	taC/taG																																																																														
BCL6	0	MSKCC	GRCh37	3	187447492	187447492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	87	583	0	ENST00000232014.4:c.701G>T	p.Ser234Ile	p.S234I	ENST00000232014	NM_001130845.1	234	aGt/aTt																																																																														
INHBA	0	MSKCC	GRCh37	7	41730127	41730127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	128	359	0	ENST00000242208.4:c.402G>T	p.Lys134Asn	p.K134N	ENST00000242208	NM_002192.2	134	aaG/aaT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484168	8484168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	192	575	1	ENST00000356435.5:c.3364G>T	p.Gly1122Cys	p.G1122C	ENST00000356435		1122	Ggc/Tgc																																																																														
ATRX	0	MSKCC	GRCh37	X	76813110	76813110	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	85	536	0	ENST00000373344.5:c.6511A>C	p.Met2171Leu	p.M2171L	ENST00000373344	NM_000489.3	2171	Atg/Ctg																																																																														
VHL	0	MSKCC	GRCh37	3	10183873	10183873	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0008137-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	119	601	0	ENST00000256474.2:c.340+2T>A		p.X114_splice	ENST00000256474	NM_000551.3	114																																																																															
ALK	0	MSKCC	GRCh37	2	29474041	29474041	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs78723472		P-0008137-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	73	898	0	ENST00000389048.3:c.2134G>A	p.Val712Met	p.V712M	ENST00000389048	NM_004304.4	712	Gtg/Atg																																																																														
B2M	0	MSKCC	GRCh37	15	45003742	45003813	+	splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant	Splice_Site	DEL	GAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCAGCGT	GAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCAGCGT	-			P-0008137-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	26	491	0	ENST00000558401.1:c.1_67+5del		p.X1_splice	ENST00000558401	NM_004048.2	1																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	86	172	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	352	391	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0025203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	75	237	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
INHA	0	MSKCC	GRCh37	2	220439724	220439724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201577506		P-0025203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	115	379	0	ENST00000243786.2:c.577G>A	p.Val193Ile	p.V193I	ENST00000243786	NM_002191.3	193	Gtc/Atc																																																																														
PTEN	0	MSKCC	GRCh37	10	89653780	89653781	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0025203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	26	397	0	ENST00000371953.3:c.80-1_80del		p.X27_splice	ENST00000371953	NM_000314.4	27																																																																															
MSH2	0	MSKCC	GRCh37	2	47693815	47693816	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0025203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	38	364	0	ENST00000233146.2:c.1530_1531del	p.Gln510HisfsTer2	p.Q510Hfs*2	ENST00000233146	NM_000251.2	510	cAG/c																																																																														
INPP4A	0	MSKCC	GRCh37	2	99155989	99155990	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0025203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	76	317	0	ENST00000074304.5:c.671-2_671-1del		p.X224_splice	ENST00000074304	NM_001134224.1	224																																																																															
MED12	0	MSKCC	GRCh37	X	70342636	70342637	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0025203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	104	478	0	ENST00000374080.3:c.1398_1399del	p.His466GlnfsTer3	p.H466Qfs*3	ENST00000374080		466	cAT/c																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430403	78430412	+	frameshift_variant	Frame_Shift_Del	DEL	AATTAACTCT	AATTAACTCT	-			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	29	566	0	ENST00000370768.2:c.756_765del	p.Leu252PhefsTer18	p.L252Ffs*18	ENST00000370768	NM_003902.3	252	ttAGAGTTAATT/tt																																																																														
TSC2	0	MSKCC	GRCh37	16	2108802	2108821	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCTCTGGGGAGCCCACC	GGCTCTCTGGGGAGCCCACC	-			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	50	605	0	ENST00000219476.3:c.909_928del	p.Trp304PhefsTer27	p.W304Ffs*27	ENST00000219476	NM_000548.3	301	atGGCTCTCTGGGGAGCCCACCgg/atgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	166	550	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SUZ12	0	MSKCC	GRCh37	17	30322675	30322675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	105	585	0	ENST00000322652.5:c.1688G>A	p.Arg563His	p.R563H	ENST00000322652	NM_015355.2	563	cGt/cAt																																																																														
RARA	5914	MSKCC	GRCh37	17	38508177	38508177	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749735817		P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	61	401	0	ENST00000254066.5:c.485G>A	p.Arg162Gln	p.R162Q	ENST00000254066	NM_000964.3	162	cGa/cAa																																																																														
EPAS1	0	MSKCC	GRCh37	2	46605072	46605072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	93	677	0	ENST00000263734.3:c.1289C>A	p.Ala430Asp	p.A430D	ENST00000263734	NM_001430.4	430	gCc/gAc																																																																														
TET2	0	MSKCC	GRCh37	4	106196508	106196508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	34	471	0	ENST00000380013.4:c.4841C>T	p.Pro1614Leu	p.P1614L	ENST00000380013	NM_001127208.2	1614	cCc/cTc																																																																														
APC	0	MSKCC	GRCh37	5	112175198	112175199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	75	293	0	ENST00000257430.4:c.3910dup	p.Ile1304AsnfsTer11	p.I1304Nfs*11	ENST00000257430	NM_000038.5	1303	caa/cAaa																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197087	26197087	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	62	446	0	ENST00000356476.2:c.392T>A	p.Ile131Asn	p.I131N	ENST00000356476		131	aTt/aAt																																																																														
AR	0	MSKCC	GRCh37	X	66765382	66765382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025207-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	74	261	0	ENST00000374690.3:c.394G>A	p.Val132Ile	p.V132I	ENST00000374690	NM_000044.3	132	Gtc/Atc																																																																														
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	12	172	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	203	470	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PMS2	0	MSKCC	GRCh37	7	6026664	6026664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	178	691	0	ENST00000265849.7:c.1732C>T	p.Arg578Cys	p.R578C	ENST00000265849	NM_000535.5	578	Cgt/Tgt																																																																														
ESR1	0	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	116	383	4	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																																																														
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	116	280	0	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																																																														
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	97	490	4	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																																																														
RNF43	0	MSKCC	GRCh37	17	56435552	56435552	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62636625		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	128	483	1	ENST00000407977.2:c.1585C>T	p.Arg529Trp	p.R529W	ENST00000407977		529	Cgg/Tgg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739031	40739031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	85	459	1	ENST00000373198.4:c.3253G>A	p.Val1085Ile	p.V1085I	ENST00000373198	NM_133170.3	1085	Gtc/Atc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	85	503	4	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732963	30732963	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	87	286	1	ENST00000359013.4:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000359013	NM_001024847.2	551	Gag/Tag																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	128	334	1	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	63	300	1	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821594	72821596	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-	rs767179754		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	13	77	0	ENST00000268489.5:c.10579_10581del	p.Gly3527del	p.G3527del	ENST00000268489	NM_006885.3	3527	GGC/-																																																																														
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	100	282	2	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																																																														
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	57	220	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120468185	120468185	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	99	451	0	ENST00000256646.2:c.4254delC	p.Ser1419AlafsTer8	p.S1419Afs*8	ENST00000256646	NM_024408.3	1418	ccC/cc																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	105	563	8	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																														
CASP8	0	MSKCC	GRCh37	2	202150022	202150022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	98	461	0	ENST00000358485.4:c.1463T>C	p.Leu488Pro	p.L488P	ENST00000358485	NM_001080125.1	488	cTg/cCg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	53	293	2	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	97	452	5	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
CDK12	0	MSKCC	GRCh37	17	37627501	37627501	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	120	432	0	ENST00000447079.4:c.1421delA	p.Asn474IlefsTer8	p.N474Ifs*8	ENST00000447079	NM_015083.1	472	gtA/gt																																																																														
SPEN	0	MSKCC	GRCh37	1	16258889	16258889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	150	573	1	ENST00000375759.3:c.6158delA	p.Asn2053ThrfsTer11	p.N2053Tfs*11	ENST00000375759	NM_015001.2	2052	Aaa/aa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31017210	31017210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	88	288	2	ENST00000375687.4:c.541G>A	p.Gly181Arg	p.G181R	ENST00000375687	NM_015338.5	181	Ggg/Agg																																																																														
RARA	0	MSKCC	GRCh37	17	38512377	38512377	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	55	384	0	ENST00000254066.5:c.1293delG	p.Arg432GlyfsTer211	p.R432Gfs*211	ENST00000254066	NM_000964.3	430	Ggg/gg																																																																														
APC	0	MSKCC	GRCh37	5	112170772	112170772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	153	510	0	ENST00000257430.4:c.1868G>A	p.Arg623Gln	p.R623Q	ENST00000257430	NM_000038.5	623	cGg/cAg																																																																														
MED12	0	MSKCC	GRCh37	X	70356251	70356251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	115	481	0	ENST00000374080.3:c.5146C>T	p.Arg1716Ter	p.R1716*	ENST00000374080		1716	Cga/Tga																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856626	111856626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	73	249	0	ENST00000341259.2:c.677G>A	p.Arg226Gln	p.R226Q	ENST00000341259	NM_005475.2	226	cGg/cAg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9770535	9770535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	113	544	0	ENST00000377346.4:c.22C>T	p.Pro8Ser	p.P8S	ENST00000377346	NM_005026.3	8	Ccc/Tcc																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841231	15841236	+	inframe_deletion	In_Frame_Del	DEL	AGCCGG	AGCCGG	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	63	276	5	ENST00000307771.7:c.1338_1343delGAGCCG	p.Ser447_Arg448del	p.S447_R448del	ENST00000307771	NM_005089.3	439	AGCCGG/-																																																																														
POLD1	0	MSKCC	GRCh37	19	50912075	50912077	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	116	600	0	ENST00000440232.2:c.1812_1814del	p.Ser605del	p.S605del	ENST00000440232	NM_002691.3	603	ttCTCc/ttc																																																																														
AXIN1	0	MSKCC	GRCh37	16	396590	396590	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	124	508	1	ENST00000262320.3:c.436C>T	p.Arg146Ter	p.R146*	ENST00000262320	NM_003502.3	146	Cga/Tga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	61	603	0	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980527	1980527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	98	496	2	ENST00000382891.5:c.3989C>T	p.Ala1330Val	p.A1330V	ENST00000382891	NM_133335.3	1330	gCg/gTg																																																																														
E2F3	0	MSKCC	GRCh37	6	20402834	20402836	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	16	54	0	ENST00000346618.3:c.385_387del	p.Gly129del	p.G129del	ENST00000346618	NM_001949.4	124	aGCGgc/agc																																																																														
SPEN	0	MSKCC	GRCh37	1	16262480	16262480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	36	206	0	ENST00000375759.3:c.9745C>A	p.Pro3249Thr	p.P3249T	ENST00000375759	NM_015001.2	3249	Ccc/Acc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27024014	27024014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	26	94	0	ENST00000324856.7:c.1120C>A	p.Leu374Ile	p.L374I	ENST00000324856	NM_006015.4	374	Ctc/Atc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118390781	118390781	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	67	268	0	ENST00000534358.1:c.11429+2T>C		p.X3810_splice	ENST00000534358	NM_005933.3	3810																																																																															
CCND2	0	MSKCC	GRCh37	12	4398022	4398022	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	86	438	0	ENST00000261254.3:c.586A>G	p.Met196Val	p.M196V	ENST00000261254	NM_001759.3	196	Atg/Gtg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56493650	56493650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	99	328	0	ENST00000267101.3:c.2966G>T	p.Gly989Val	p.G989V	ENST00000267101	NM_001982.3	989	gGg/gTg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38064107	38064107	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	79	303	0	ENST00000250448.2:c.71A>G	p.Glu24Gly	p.E24G	ENST00000250448	NM_004496.3	24	gAg/gGg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99452078	99452078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	60	338	1	ENST00000268035.6:c.1412G>A	p.Arg471His	p.R471H	ENST00000268035	NM_000875.3	471	cGc/cAc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3820938	3820938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	124	472	0	ENST00000262367.5:c.2513C>A	p.Pro838His	p.P838H	ENST00000262367	NM_004380.2	838	cCt/cAt																																																																														
FLCN	0	MSKCC	GRCh37	17	17119753	17119753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	101	481	0	ENST00000285071.4:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000285071	NM_144997.5	414	cGg/cAg																																																																														
NF1	0	MSKCC	GRCh37	17	29533376	29533376	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs147417054		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	78	211	0	ENST00000358273.4:c.1379T>C	p.Ile460Thr	p.I460T	ENST00000358273	NM_001042492.2	460	aTa/aCa																																																																														
NF1	0	MSKCC	GRCh37	17	29652995	29652996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	121	343	0	ENST00000358273.4:c.4998dup	p.Pro1667SerfsTer15	p.P1667Sfs*15	ENST00000358273	NM_001042492.2	1665	gtt/gTtt																																																																														
NF1	0	MSKCC	GRCh37	17	29661858	29661858	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	91	351	0	ENST00000358273.4:c.5815A>G	p.Ile1939Val	p.I1939V	ENST00000358273	NM_001042492.2	1939	Att/Gtt																																																																														
SUZ12	0	MSKCC	GRCh37	17	30320963	30320963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	168	463	1	ENST00000322652.5:c.1373G>A	p.Arg458His	p.R458H	ENST00000322652	NM_015355.2	458	cGc/cAc																																																																														
RNF43	0	MSKCC	GRCh37	17	56434885	56434885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	123	430	0	ENST00000407977.2:c.2252C>T	p.Thr751Ile	p.T751I	ENST00000407977		751	aCc/aTc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740708	58740708	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	115	427	0	ENST00000305921.3:c.1613T>C	p.Leu538Ser	p.L538S	ENST00000305921	NM_003620.3	538	tTa/tCa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226743	2226743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	79	459	0	ENST00000398665.3:c.4223G>C	p.Gly1408Ala	p.G1408A	ENST00000398665	NM_032482.2	1408	gGc/gCc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10291061	10291061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	104	405	0	ENST00000340748.4:c.410C>T	p.Thr137Met	p.T137M	ENST00000340748		137	aCg/aTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11145606	11145606	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61750054		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	77	449	0	ENST00000344626.4:c.3968G>A	p.Arg1323His	p.R1323H	ENST00000344626	NM_003072.3	1323	cGc/cAc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257424	19257424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	136	579	0	ENST00000162023.5:c.709T>C	p.Ser237Pro	p.S237P	ENST00000162023		237	Tcc/Ccc																																																																														
ERF	0	MSKCC	GRCh37	19	42753390	42753390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	115	523	2	ENST00000222329.4:c.874G>A	p.Gly292Arg	p.G292R	ENST00000222329	NM_006494.2	292	Ggg/Agg																																																																														
MSH6	0	MSKCC	GRCh37	2	48025871	48025871	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	93	292	0	ENST00000234420.5:c.749T>C	p.Val250Ala	p.V250A	ENST00000234420	NM_000179.2	250	gTc/gCc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99149939	99149939	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200860936		P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	43	472	0	ENST00000074304.5:c.251C>T	p.Ala84Val	p.A84V	ENST00000074304	NM_001134224.1	84	gCa/gTa																																																																														
CASP8	0	MSKCC	GRCh37	2	202151315	202151315	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	107	399	0	ENST00000358485.4:c.1615T>C	p.Ter539ArgextTer88	p.*539Rext*88	ENST00000358485	NM_001080125.1	539	Tga/Cga																																																																														
BARD1	0	MSKCC	GRCh37	2	215595197	215595197	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	134	401	2	ENST00000260947.4:c.1939C>T	p.Gln647Ter	p.Q647*	ENST00000260947	NM_000465.2	647	Cag/Tag																																																																														
RAC2	0	MSKCC	GRCh37	22	37628917	37628917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	149	576	0	ENST00000249071.6:c.149C>A	p.Pro50Gln	p.P50Q	ENST00000249071	NM_002872.4	50	cCa/cAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47163727	47163727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	94	430	0	ENST00000409792.3:c.2399G>A	p.Ser800Asn	p.S800N	ENST00000409792	NM_014159.6	800	aGc/aAc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259641	89259641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	65	281	0	ENST00000336596.2:c.785G>A	p.Gly262Asp	p.G262D	ENST00000336596	NM_005233.5	262	gGc/gAc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55146604	55146604	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	181	451	0	ENST00000257290.5:c.2278T>C	p.Ser760Pro	p.S760P	ENST00000257290	NM_006206.4	760	Tca/Cca																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356172	66356172	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	113	436	1	ENST00000273854.3:c.1325A>G	p.Glu442Gly	p.E442G	ENST00000273854	NM_004439.5	442	gAg/gGg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249499	153249499	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	114	440	0	ENST00000281708.4:c.1279T>C	p.Ser427Pro	p.S427P	ENST00000281708	NM_033632.3	427	Tca/Cca																																																																														
FAT1	0	MSKCC	GRCh37	4	187557989	187557989	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	106	304	0	ENST00000441802.2:c.3722A>T	p.Asn1241Ile	p.N1241I	ENST00000441802	NM_005245.3	1241	aAc/aTc																																																																														
MSH3	0	MSKCC	GRCh37	5	80037320	80037320	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	109	349	0	ENST00000265081.6:c.1606A>G	p.Thr536Ala	p.T536A	ENST00000265081	NM_002439.4	536	Aca/Gca																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738482	145738482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	140	448	1	ENST00000428558.2:c.2503G>A	p.Asp835Asn	p.D835N	ENST00000428558	NM_004260.3	835	Gac/Aac																																																																														
JAK2	0	MSKCC	GRCh37	9	5126684	5126684	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	88	290	0	ENST00000381652.3:c.3292A>T	p.Ile1098Phe	p.I1098F	ENST00000381652	NM_004972.3	1098	Atc/Ttc																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128434783	128434783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	144	513	1	ENST00000265960.3:c.71C>T	p.Thr24Met	p.T24M	ENST00000265960	NM_001006617.1	24	aCg/aTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139393677	139393677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	111	538	1	ENST00000277541.6:c.5969C>T	p.Ala1990Val	p.A1990V	ENST00000277541	NM_017617.3	1990	gCc/gTc																																																																														
ATRX	0	MSKCC	GRCh37	X	76854890	76854890	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	119	463	0	ENST00000373344.5:c.5946del	p.Lys1982AsnfsTer33	p.K1982Nfs*33	ENST00000373344	NM_000489.3	1982	aaA/aa																																																																														
BTK	0	MSKCC	GRCh37	X	100608237	100608237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	140	533	0	ENST00000308731.7:c.1853G>T	p.Arg618Met	p.R618M	ENST00000308731	NM_000061.2	618	aGg/aTg																																																																														
DUSP4	0	MSKCC	GRCh37	8	29197675	29197675	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	121	440	1	ENST00000240100.2:c.519del	p.Ser174ValfsTer53	p.S174Vfs*53	ENST00000240100	NM_001394.6	173	ccC/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	19	526	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0025220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	11	395	2	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
PTEN	0	MSKCC	GRCh37	10	89685311	89685312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0025222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	129	333	0	ENST00000371953.3:c.208_209dup	p.Cys71PhefsTer29	p.C71Ffs*29	ENST00000371953	NM_000314.4	69	aat/aaTCt																																																																														
PTPN11	0	MSKCC	GRCh37	12	112892446	112892446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	126	419	0	ENST00000351677.2:c.604A>G	p.Met202Val	p.M202V	ENST00000351677	NM_002834.3	202	Atg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7579372	7579393	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCTGGTAGGTTTTCTGGGAA	GCCCTGGTAGGTTTTCTGGGAA	-			P-0025222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	99	506	0	ENST00000269305.4:c.294_315del	p.Ser99AlafsTer17	p.S99Afs*17	ENST00000269305	NM_001126112.2	98	ccTTCCCAGAAAACCTACCAGGGC/cc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59858254	59858254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	143	460	0	ENST00000259008.2:c.1741C>G	p.Arg581Gly	p.R581G	ENST00000259008	NM_032043.2	581	Cga/Gga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971042	21971042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	111	264	2	ENST00000304494.5:c.316G>A	p.Val106Met	p.V106M	ENST00000304494	NM_000077.4	106	Gtg/Atg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971042	21971042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	111	264	2	ENST00000304494.5:c.316G>A	p.Val106Met	p.V106M	ENST00000304494	NM_000077.4	106	Gtg/Atg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971042	21971042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	111	264	2	ENST00000304494.5:c.316G>A	p.Val106Met	p.V106M	ENST00000304494	NM_000077.4	106	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	165	350	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0025225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	94	463	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740573	145740573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	91	563	1	ENST00000428558.2:c.1444C>T	p.Arg482Cys	p.R482C	ENST00000428558	NM_004260.3	482	Cgc/Tgc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53230895	53230895	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	93	506	0	ENST00000375401.3:c.1898A>G	p.Tyr633Cys	p.Y633C	ENST00000375401	NM_004187.3	633	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0025255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	222	769	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
NEGR1	0	MSKCC	GRCh37	1	72748041	72748041	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	235	726	0	ENST00000357731.5:c.137A>G	p.Asp46Gly	p.D46G	ENST00000357731	NM_173808.2	46	gAc/gGc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37865585	37865585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	58	730	0	ENST00000269571.5:c.454G>A	p.Gly152Arg	p.G152R	ENST00000269571		152	Ggg/Agg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213906	66213906	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	22	554	0	ENST00000273854.3:c.2524A>G	p.Ile842Val	p.I842V	ENST00000273854	NM_004439.5	842	Atc/Gtc																																																																														
APC	0	MSKCC	GRCh37	5	112174559	112174559	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	104	544	1	ENST00000257430.4:c.3268C>T	p.Gln1090Ter	p.Q1090*	ENST00000257430	NM_000038.5	1090	Caa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	140	435	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
AURKB	0	MSKCC	GRCh37	17	8108652	8108652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	292	708	1	ENST00000585124.1:c.743G>A	p.Arg248His	p.R248H	ENST00000585124	NM_004217.3	248	cGc/cAc																																																																														
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0025256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	428	570	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																																																														
TERT	0	MSKCC	GRCh37	5	1293475	1293475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1098	235	782	1	ENST00000310581.5:c.1526C>T	p.Thr509Met	p.T509M	ENST00000310581	NM_198253.2	509	aCg/aTg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061701	38061701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	122	337	1	ENST00000250448.2:c.288G>A	p.Met96Ile	p.M96I	ENST00000250448	NM_004496.3	96	atG/atA																																																																														
RIT1	0	MSKCC	GRCh37	1	155870298	155870298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	242	629	0	ENST00000368323.3:c.541G>A	p.Glu181Lys	p.E181K	ENST00000368323	NM_006912.5	181	Gag/Aag																																																																														
FH	0	MSKCC	GRCh37	1	241675422	241675422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	130	402	0	ENST00000366560.3:c.400G>A	p.Asp134Asn	p.D134N	ENST00000366560	NM_000143.3	134	Gat/Aat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446449	49446449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	225	573	0	ENST00000301067.7:c.1156G>A	p.Asp386Asn	p.D386N	ENST00000301067	NM_003482.3	386	Gat/Aat																																																																														
NCOA3	0	MSKCC	GRCh37	20	46252829	46252829	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0025256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1237	68	234	0	ENST00000371998.3:c.256+2T>C		p.X86_splice	ENST00000371998		86																																																																															
EP300	0	MSKCC	GRCh37	22	41551083	41551083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1103	263	727	0	ENST00000263253.7:c.3227G>C	p.Arg1076Pro	p.R1076P	ENST00000263253	NM_001429.3	1076	cGt/cCt																																																																														
ESR1	0	MSKCC	GRCh37	6	152265533	152265533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	214	587	0	ENST00000206249.3:c.986C>T	p.Ser329Phe	p.S329F	ENST00000206249	NM_000125.3	329	tCc/tTc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	92	726	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
NCOA3	0	MSKCC	GRCh37	20	46252683	46252683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	38	366	2	ENST00000371998.3:c.112C>T	p.Arg38Trp	p.R38W	ENST00000371998		38	Cgg/Tgg																																																																														
NSD1	0	MSKCC	GRCh37	5	176687112	176687112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	101	674	0	ENST00000439151.2:c.5089C>T	p.Arg1697Trp	p.R1697W	ENST00000439151	NM_022455.4	1697	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	247	686	0	ENST00000269305.4:c.581T>C	p.Leu194Pro	p.L194P	ENST00000269305	NM_001126112.2	194	cTt/cCt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843482	156843482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	87	575	0	ENST00000524377.1:c.908T>A	p.Phe303Tyr	p.F303Y	ENST00000524377	NM_002529.3	303	tTc/tAc																																																																														
INSR	0	MSKCC	GRCh37	19	7184535	7184535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	102	525	0	ENST00000302850.5:c.766C>G	p.Arg256Gly	p.R256G	ENST00000302850	NM_000208.2	256	Cgc/Ggc																																																																														
SOS1	0	MSKCC	GRCh37	2	39234270	39234270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	51	616	0	ENST00000402219.2:c.2575C>A	p.Leu859Ile	p.L859I	ENST00000402219	NM_005633.3	859	Cta/Ata																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024146	31024146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	97	705	0	ENST00000375687.4:c.3631G>C	p.Asp1211His	p.D1211H	ENST00000375687	NM_015338.5	1211	Gac/Cac																																																																														
FAT1	0	MSKCC	GRCh37	4	187540399	187540399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	53	441	0	ENST00000441802.2:c.7341C>G	p.Ile2447Met	p.I2447M	ENST00000441802	NM_005245.3	2447	atC/atG																																																																														
PLK2	0	MSKCC	GRCh37	5	57750748	57750748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	36	427	0	ENST00000274289.3:c.1856G>C	p.Gly619Ala	p.G619A	ENST00000274289	NM_006622.3	619	gGc/gCc																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158491	26158491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025279-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	78	534	0	ENST00000289316.2:c.94C>G	p.Arg32Gly	p.R32G	ENST00000289316	NM_138720.2	32	Cgc/Ggc																																																																														
MET	0	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	1348	767	1	ENST00000397752.3:c.3028+1G>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	320	627	0	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																																																														
RAD50	0	MSKCC	GRCh37	5	131953826	131953826	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	72	431	0	ENST00000265335.6:c.3229C>T	p.Arg1077Ter	p.R1077*	ENST00000265335		1077	Cga/Tga																																																																														
EP300	0	MSKCC	GRCh37	22	41573146	41573155	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAAGCTCC	CAGAAGCTCC	-			P-0025280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	115	637	0	ENST00000263253.7:c.5431_5440del	p.Gln1811GlyfsTer92	p.Q1811Gfs*92	ENST00000263253	NM_001429.3	1811	CAGAAGCTCCgg/gg																																																																														
ETV1	0	MSKCC	GRCh37	7	13971133	13971133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	87	222	1	ENST00000405192.2:c.796G>A	p.Asp266Asn	p.D266N	ENST00000405192	NM_001163147.1	266	Gac/Aac																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0025286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	118	411	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913514		P-0025286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	16	436	0	ENST00000288135.5:c.2466T>A	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaA																																																																														
KIT	0	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	37	436	0	ENST00000288135.5:c.2466T>G	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaG																																																																														
KIT	0	MSKCC	GRCh37	4	55599341	55599341	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	15	433	0	ENST00000288135.5:c.2467T>G	p.Tyr823Asp	p.Y823D	ENST00000288135	NM_000222.2	823	Tat/Gat																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0025286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	59	420	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
KIT	3815	MSKCC	GRCh37	4	55602664	55602664	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C	rs1057519713		P-0025286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	24	272	0	ENST00000288135.5:c.2485G>C	p.Ala829Pro	p.A829P	ENST00000288135	NM_000222.2	829	Gct/Cct																																																																														
FANCA	0	MSKCC	GRCh37	16	89811418	89811418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	235	567	2	ENST00000389301.3:c.3575C>T	p.Pro1192Leu	p.P1192L	ENST00000389301	NM_000135.2	1192	cCg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	83	353	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	100	407	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	133	562	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	117	620	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
CDC73	0	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	53	292	0	ENST00000367435.3:c.440G>A	p.Arg147His	p.R147H	ENST00000367435	NM_024529.4	147	cGc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89712013	89712014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	74	219	0	ENST00000371953.3:c.632dup	p.Cys211TrpfsTer32	p.C211Wfs*32	ENST00000371953	NM_000314.4	211	tgc/tGgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49448103	49448103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	117	461	2	ENST00000301067.7:c.497C>T	p.Ser166Leu	p.S166L	ENST00000301067	NM_003482.3	166	tCa/tTa																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64129381	64129381	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	69	580	0	ENST00000334205.4:c.813C>G	p.Asp271Glu	p.D271E	ENST00000334205	NM_003942.2	271	gaC/gaG																																																																														
IRS2	0	MSKCC	GRCh37	13	110434530	110434530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	133	499	1	ENST00000375856.3:c.3871G>T	p.Gly1291Trp	p.G1291W	ENST00000375856	NM_003749.2	1291	Ggg/Tgg																																																																														
MGA	0	MSKCC	GRCh37	15	42058342	42058342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201470885		P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	72	276	0	ENST00000219905.7:c.8062G>A	p.Val2688Ile	p.V2688I	ENST00000219905	NM_001164273.1	2688	Gtc/Atc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713262	30713263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	97	368	0	ENST00000359013.4:c.663dup	p.Leu222AlafsTer27	p.L222Afs*27	ENST00000359013	NM_001024847.2	221	aag/aaGg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332628	153332628	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	119	443	0	ENST00000281708.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000281708	NM_033632.3	110	Gag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112176016	112176016	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	73	298	0	ENST00000257430.4:c.4725del	p.Glu1576LysfsTer74	p.E1576Kfs*74	ENST00000257430	NM_000038.5	1575	ctA/ct																																																																														
NSD1	0	MSKCC	GRCh37	5	176673712	176673712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	90	396	1	ENST00000439151.2:c.4412G>A	p.Arg1471Gln	p.R1471Q	ENST00000439151	NM_022455.4	1471	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	175	572	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0025293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	24	269	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144049	11144051	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0025293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	197	608	0	ENST00000344626.4:c.3634_3636del	p.Glu1212del	p.E1212del	ENST00000344626	NM_003072.3	1210	gtGGAg/gtg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942129	71942129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	89	727	0	ENST00000298229.2:c.1393G>T	p.Asp465Tyr	p.D465Y	ENST00000298229	NM_001567.3	465	Gac/Tac																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942138	71942138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	108	735	0	ENST00000298229.2:c.1402G>A	p.Val468Ile	p.V468I	ENST00000298229	NM_001567.3	468	Gtc/Atc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061909	38061909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	183	539	0	ENST00000250448.2:c.80C>G	p.Ser27Cys	p.S27C	ENST00000250448	NM_004496.3	27	tCc/tGc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2226169	2226169	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	164	666	0	ENST00000326181.6:c.1867del	p.Arg623GlyfsTer11	p.R623Gfs*11	ENST00000326181	NM_032271.2	622	gaC/ga																																																																														
TCF3	0	MSKCC	GRCh37	19	1621912	1621914	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0025293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	36	620	0	ENST00000344749.5:c.878_880del	p.Phe293del	p.F293del	ENST00000344749	NM_001136139.2	293	tTCTcc/tcc																																																																														
NF2	0	MSKCC	GRCh37	22	30064436	30064436	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	174	451	0	ENST00000338641.4:c.999+1G>T		p.X333_splice	ENST00000338641	NM_000268.3	333																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67592098	67592099	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGAGGGAAGCGAGATGGCACTTTTCTTGTC			P-0025293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	159	269	0	ENST00000274335.5:c.1917_1946dup	p.Gly640_Arg649dup	p.G640_R649dup	ENST00000274335		640	-/CGAGGGAAGCGAGATGGCACTTTTCTTGTC																																																																														
MSH3	0	MSKCC	GRCh37	5	80071512	80071512	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0025293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	187	397	0	ENST00000265081.6:c.2254-1G>C		p.X752_splice	ENST00000265081	NM_002439.4	752																																																																															
BTK	0	MSKCC	GRCh37	X	100613300	100613300	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	148	476	0	ENST00000308731.7:c.1100C>T	p.Ala367Val	p.A367V	ENST00000308731	NM_000061.2	367	gCa/gTa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0025344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	65	540	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
IRS2	0	MSKCC	GRCh37	13	110436257	110436257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	19	287	0	ENST00000375856.3:c.2144C>T	p.Ala715Val	p.A715V	ENST00000375856	NM_003749.2	715	gCg/gTg																																																																														
NBN	0	MSKCC	GRCh37	8	90976637	90976637	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0025239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	238	508	0	ENST00000265433.3:c.994+1del		p.X332_splice	ENST00000265433	NM_002485.4	332																																																																															
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	88	621	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	61	504	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	166	403	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	105	290	2	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
TBX3	6926	MSKCC	GRCh37	12	115112154	115112154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	110	567	0	ENST00000257566.3:c.1586del	p.Gly529AlafsTer103	p.G529Afs*103	ENST00000257566	NM_016569.3	529	gGc/gc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99182575	99182575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	86	530	0	ENST00000074304.5:c.2378G>A	p.Arg793Gln	p.R793Q	ENST00000074304	NM_001134224.1	793	cGa/cAa																																																																														
CTCF	0	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	156	542	1	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	44	348	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	83	570	3	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																																																														
FLT4	0	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	101	753	2	ENST00000261937.6:c.1267delC	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120468185	120468185	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	125	618	3	ENST00000256646.2:c.4254delC	p.Ser1419AlafsTer8	p.S1419Afs*8	ENST00000256646	NM_024408.3	1418	ccC/cc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885145	111885145	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	107	529	0	ENST00000341259.2:c.1038delG	p.Leu347CysfsTer26	p.L347Cfs*26	ENST00000341259	NM_005475.2	345	Ggg/gg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	67	407	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	74	353	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																																																														
ATR	0	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	80	548	0	ENST00000350721.4:c.5440delA	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																																																														
IRS2	0	MSKCC	GRCh37	13	110434595	110434595	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	59	543	1	ENST00000375856.3:c.3806A>C	p.Gln1269Pro	p.Q1269P	ENST00000375856	NM_003749.2	1269	cAg/cCg																																																																														
PNRC1	0	MSKCC	GRCh37	6	89790819	89790819	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	92	673	1	ENST00000336032.3:c.211delC	p.Gln71SerfsTer112	p.Q71Sfs*112	ENST00000336032	NM_006813.2	69	aCc/ac																																																																														
JAK3	0	MSKCC	GRCh37	19	17955111	17955112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	90	698	0	ENST00000458235.1:c.115dupC	p.Gln39ProfsTer13	p.Q39Pfs*13	ENST00000458235	NM_000215.3	39	cag/cCag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696461	47696461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	72	459	0	ENST00000347630.2:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000347630	NM_001007230.1	121	cGg/cAg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188294	32188295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	76	756	5	ENST00000375023.3:c.1046dupG	p.Thr350HisfsTer4	p.T350Hfs*4	ENST00000375023	NM_004557.3	349	ggc/ggGc																																																																														
RASA1	0	MSKCC	GRCh37	5	86668014	86668014	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	36	298	0	ENST00000274376.6:c.1776+2T>C		p.X592_splice	ENST00000274376	NM_002890.2	592																																																																															
IGF1	0	MSKCC	GRCh37	12	102813432	102813432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	89	535	1	ENST00000307046.8:c.257C>T	p.Ala86Val	p.A86V	ENST00000307046	NM_001111285.1	86	gCg/gTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	156	830	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929412	44929415	+	frameshift_variant	Frame_Shift_Del	DEL	ACAA	ACAA	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	108	674	0	ENST00000377967.4:c.2515_2518del	p.Asn839ValfsTer27	p.N839Vfs*27	ENST00000377967	NM_021140.2	838	ACAAac/ac																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	106	595	4	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71944121	71944123	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GAG	GAG	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	107	622	0	ENST00000298229.2:c.1960_1962del	p.Glu654del	p.E654del	ENST00000298229	NM_001567.3	652	GAG/-																																																																														
SPRED1	0	MSKCC	GRCh37	15	38631981	38631981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	106	654	7	ENST00000299084.4:c.471delT	p.Gln158SerfsTer16	p.Q158Sfs*16	ENST00000299084	NM_152594.2	156	cTt/ct																																																																														
MEF2B	0	MSKCC	GRCh37	19	19260223	19260223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	127	749	0	ENST00000162023.5:c.70C>T	p.Arg24Trp	p.R24W	ENST00000162023		24	Cgg/Tgg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948376	71948376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	161	865	2	ENST00000298229.2:c.3088C>T	p.Arg1030Trp	p.R1030W	ENST00000298229	NM_001567.3	1030	Cgg/Tgg																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073803	8073804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	54	298	0	ENST00000377482.5:c.855dupC	p.Arg286GlnfsTer7	p.R286Qfs*7	ENST00000377482	NM_018948.3	285	-/C																																																																														
LMO1	0	MSKCC	GRCh37	11	8248576	8248577	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	120	718	0	ENST00000335790.3:c.310dup	p.Ala104GlyfsTer40	p.A104Gfs*40	ENST00000335790	NM_002315.2	104	gcc/gGcc																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942052	71942053	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	98	672	2	ENST00000298229.2:c.1322dup	p.Asn441LysfsTer25	p.N441Kfs*25	ENST00000298229	NM_001567.3	439	cca/ccAa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94192633	94192633	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	120	672	0	ENST00000323929.3:c.1441del	p.Thr481HisfsTer43	p.T481Hfs*43	ENST00000323929	NM_005591.3	481	Aca/ca																																																																														
IGF1	0	MSKCC	GRCh37	12	102874150	102874150	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	48	420	0	ENST00000307046.8:c.10del	p.Ile4SerfsTer17	p.I4Sfs*17	ENST00000307046	NM_001111285.1	4	Atc/tc																																																																														
POLE	0	MSKCC	GRCh37	12	133252024	133252024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	128	667	0	ENST00000320574.5:c.1186del	p.Glu396SerfsTer16	p.E396Sfs*16	ENST00000320574	NM_006231.2	396	Gag/ag																																																																														
LATS2	0	MSKCC	GRCh37	13	21563246	21563246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	122	768	0	ENST00000382592.4:c.673G>A	p.Gly225Ser	p.G225S	ENST00000382592	NM_014572.2	225	Ggc/Agc																																																																														
DICER1	0	MSKCC	GRCh37	14	95566120	95566120	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	50	312	0	ENST00000343455.3:c.4203A>C	p.Glu1401Asp	p.E1401D	ENST00000343455	NM_177438.2	1401	gaA/gaC																																																																														
CD276	0	MSKCC	GRCh37	15	73994788	73994788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	90	585	0	ENST00000318443.5:c.272A>G	p.Asn91Ser	p.N91S	ENST00000318443	NM_001024736.1	91	aAc/aGc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88679189	88679189	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200596109		P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	76	575	1	ENST00000360948.2:c.848C>T	p.Thr283Met	p.T283M	ENST00000360948	NM_001012338.2	283	aCg/aTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862948	9862948	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	85	418	0	ENST00000330684.3:c.2357-2A>G		p.X786_splice	ENST00000330684	NM_001134407.1	786																																																																															
ZFHX3	0	MSKCC	GRCh37	16	72992483	72992483	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	127	804	0	ENST00000268489.5:c.1562delA	p.Lys521ArgfsTer15	p.K521Rfs*15	ENST00000268489	NM_006885.3	521	aAg/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7578521	7578521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	177	857	0	ENST00000269305.4:c.409C>G	p.Leu137Val	p.L137V	ENST00000269305	NM_001126112.2	137	Ctg/Gtg																																																																														
CDK12	0	MSKCC	GRCh37	17	37667845	37667845	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	101	484	0	ENST00000447079.4:c.2730G>T	p.Glu910Asp	p.E910D	ENST00000447079	NM_015083.1	910	gaG/gaT																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804366	46804366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	113	466	3	ENST00000290295.7:c.641G>A	p.Arg214His	p.R214H	ENST00000290295	NM_006361.5	214	cGt/cAt																																																																														
MSI2	0	MSKCC	GRCh37	17	55334496	55334496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	62	413	0	ENST00000284073.2:c.100C>T	p.Pro34Ser	p.P34S	ENST00000284073	NM_138962.2	34	Cca/Tca																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11101901	11101901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	166	704	0	ENST00000344626.4:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000344626	NM_003072.3	441	Cgc/Tgc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15289671	15289671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	123	828	2	ENST00000263388.2:c.3800C>A	p.Pro1267His	p.P1267H	ENST00000263388	NM_000435.2	1267	cCt/cAt																																																																														
ERF	0	MSKCC	GRCh37	19	42752930	42752930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	143	765	0	ENST00000222329.4:c.1334A>G	p.Asp445Gly	p.D445G	ENST00000222329	NM_006494.2	445	gAt/gGt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212537911	212537911	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	78	611	0	ENST00000342788.4:c.1694G>C	p.Gly565Ala	p.G565A	ENST00000342788	NM_005235.2	565	gGc/gCc																																																																														
MLH1	0	MSKCC	GRCh37	3	37056033	37056033	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	86	421	0	ENST00000231790.2:c.788A>T	p.Asn263Ile	p.N263I	ENST00000231790	NM_000249.3	263	aAc/aTc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31515612	31515613	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	70	519	0	ENST00000344624.3:c.1006dup	p.Glu336GlyfsTer4	p.E336Gfs*4	ENST00000344624		336	gag/gGag																																																																														
RASA1	0	MSKCC	GRCh37	5	86676377	86676377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	43	351	0	ENST00000274376.6:c.2655G>A	p.Trp885Ter	p.W885*	ENST00000274376	NM_002890.2	885	tgG/tgA																																																																														
NSD1	0	MSKCC	GRCh37	5	176662911	176662911	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	65	377	0	ENST00000439151.2:c.3891del	p.Lys1297AsnfsTer12	p.K1297Nfs*12	ENST00000439151	NM_022455.4	1296	Aaa/aa																																																																														
MDC1	0	MSKCC	GRCh37	6	30670915	30670915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	121	721	0	ENST00000376406.3:c.5831del	p.Gly1944GlufsTer27	p.G1944Efs*27	ENST00000376406	NM_014641.2	1944	gGa/ga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099899	157099899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	117	615	1	ENST00000346085.5:c.836G>A	p.Ser279Asn	p.S279N	ENST00000346085	NM_020732.3	279	aGc/aAc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157521969	157521969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	85	448	2	ENST00000346085.5:c.4241C>T	p.Pro1414Leu	p.P1414L	ENST00000346085	NM_020732.3	1414	cCg/cTg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467614	50467614	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	50	245	0	ENST00000331340.3:c.851-2A>G		p.X284_splice	ENST00000331340	NM_006060.4	284																																																																															
XRCC2	0	MSKCC	GRCh37	7	152346037	152346037	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	91	547	0	ENST00000359321.1:c.533A>G	p.Gln178Arg	p.Q178R	ENST00000359321	NM_005431.1	178	cAg/cGg																																																																														
AGO2	0	MSKCC	GRCh37	8	141559360	141559360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	123	609	1	ENST00000220592.5:c.1441G>A	p.Ala481Thr	p.A481T	ENST00000220592	NM_012154.3	481	Gcc/Acc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141595382	141595382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	80	668	0	ENST00000220592.5:c.51del	p.Ile18SerfsTer121	p.I18Sfs*121	ENST00000220592	NM_012154.3	17	ccC/cc																																																																														
ABL1	0	MSKCC	GRCh37	9	133760801	133760801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	98	585	1	ENST00000318560.5:c.3124G>A	p.Ala1042Thr	p.A1042T	ENST00000318560	NM_005157.4	1042	Gcc/Acc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139403420	139403420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	127	790	1	ENST00000277541.6:c.3073T>C	p.Cys1025Arg	p.C1025R	ENST00000277541	NM_017617.3	1025	Tgc/Cgc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44870210	44870210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	51	562	0	ENST00000377967.4:c.389C>T	p.Ala130Val	p.A130V	ENST00000377967	NM_021140.2	130	gCt/gTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092815	27092815	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	64	582	0	ENST00000324856.7:c.2840delC	p.Pro947HisfsTer21	p.P947Hfs*21	ENST00000324856	NM_006015.4	946	Ccc/cc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10286283	10286283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	135	649	0	ENST00000340748.4:c.533G>A	p.Arg178Gln	p.R178Q	ENST00000340748		178	cGg/cAg																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514015	103514015	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	36	558	0	ENST00000355739.4:c.831G>C	p.Glu277Asp	p.E277D	ENST00000355739	NM_000123.3	277	gaG/gaC																																																																														
BIRC3	0	MSKCC	GRCh37	11	102201920	102201920	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	73	316	0	ENST00000263464.3:c.1272A>T	p.Glu424Asp	p.E424D	ENST00000263464	NM_001165.4	424	gaA/gaT																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914982	32914982	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	103	581	2	ENST00000380152.3:c.6490C>T	p.Gln2164Ter	p.Q2164*	ENST00000380152		2164	Cag/Tag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15303080	15303080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	63	1052	0	ENST00000263388.2:c.370C>G	p.Leu124Val	p.L124V	ENST00000263388	NM_000435.2	124	Ctc/Gtc																																																																														
ACVR1	0	MSKCC	GRCh37	2	158636950	158636950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	136	564	0	ENST00000263640.3:c.230G>T	p.Gly77Val	p.G77V	ENST00000263640	NM_001105.4	77	gGa/gTa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134968305	134968305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	66	712	1	ENST00000398015.3:c.2818C>A	p.Leu940Ile	p.L940I	ENST00000398015	NM_004441.4	940	Ctc/Atc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56171055	56171055	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	34	337	0	ENST00000399503.3:c.1883C>G	p.Ser628Ter	p.S628*	ENST00000399503	NM_005921.1	628	tCa/tGa																																																																														
MDC1	0	MSKCC	GRCh37	6	30679939	30679939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	86	454	0	ENST00000376406.3:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000376406	NM_014641.2	594	Gat/Aat																																																																														
ARID1B	0	MSKCC	GRCh37	6	157517444	157517444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	47	526	2	ENST00000346085.5:c.4008C>A	p.Asp1336Glu	p.D1336E	ENST00000346085	NM_020732.3	1336	gaC/gaA																																																																														
NTRK2	0	MSKCC	GRCh37	9	87339257	87339273	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACCTCACTGTGCATTGT	ACCTCACTGTGCATTGT	-			P-0025243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	51	618	0	ENST00000277120.3:c.841_853+4del		p.X281_splice	ENST00000277120		281																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	120	465	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	201	715	0	ENST00000269305.4:c.774A>C	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0025272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	244	648	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	190	725	1	ENST00000269305.4:c.489C>G	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taG																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911934	32911934	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	268	580	0	ENST00000380152.3:c.3442C>T	p.Gln1148Ter	p.Q1148*	ENST00000380152		1148	Cag/Tag																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482869	67482869	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	275	438	0	ENST00000327367.4:c.1273T>G	p.Ser425Ala	p.S425A	ENST00000327367	NM_005902.3	425	Tct/Gct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	54	642	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	45	564	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
ATRX	0	MSKCC	GRCh37	X	76940077	76940077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	56	583	1	ENST00000373344.5:c.671C>T	p.Ala224Val	p.A224V	ENST00000373344	NM_000489.3	224	gCg/gTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	152012324	152012324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	75	537	0	ENST00000262189.6:c.489G>A	p.Trp163Ter	p.W163*	ENST00000262189	NM_170606.2	163	tgG/tgA																																																																														
RXRA	0	MSKCC	GRCh37	9	137293544	137293544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	66	686	0	ENST00000481739.1:c.95C>T	p.Ser32Leu	p.S32L	ENST00000481739	NM_002957.4	32	tCg/tTg																																																																														
AGO2	0	MSKCC	GRCh37	8	141568667	141569434	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGACCTGGGGACACAGAACACAGGCATCGGCATCGGGGCTGTCCCGACCTGAGTGCAGGCGCCACTTGCGAGAATCAGTTTTCATAGGAATGTGGCTGGGGACCCAAGTTATGGGGGGCTGCAGGGCTCCCCTAGGGAGGGTGACCCACAGGTCACCCCCAGGCCACCCCAGCCGGGTCCGTCTCACCTACAAGAGTACCACGTGGTGGAGGGGAGGCTCAGCTTAGAGCATGGGGTGTCCACCCTCGTGCTGTTCTGCGCCCCCCATGGGTCATCGTGATAACACGGGGTACGGTGGATGGCCCTGCAAATGGCCTTCCAAAAGGACGGGTTCAGCGGGCAGGGCTTGTGGAGCCAGGGGTGGGCCCCCCATTCTGTTGCTGATGGGCAGAAGGACCCCGGGTAAGTCCTAGACCCCCCCCAATCTGAGTTTCTTGGAGTAGAAAGCAGGCTGACTGGGTACAGACACCTGCCGGGCTGTGTAAGGATTAAATGAAGACAAAAGAAAACGCATCCTAGGTTCCAGCGTTAGGAAATGCTGATCACAGCCACGCTGCTGCTTCTAGTCCTGAGATCATGACTCAGACGTGACTGACTCCCCAACCTCATCCTCACCCCATGGGGTTGTATTTATTTAGGAAACCCCCACTCCCGCTCTGGGAAATGGATCTAACTCATCTCCATGCTACCTCATCTGATGGCTACATTCTGCCACCCCCACCTCCCCAAATGCGCACAAGAACCAGAACTGCAAAATGCGGTCCCGG	TAGACCTGGGGACACAGAACACAGGCATCGGCATCGGGGCTGTCCCGACCTGAGTGCAGGCGCCACTTGCGAGAATCAGTTTTCATAGGAATGTGGCTGGGGACCCAAGTTATGGGGGGCTGCAGGGCTCCCCTAGGGAGGGTGACCCACAGGTCACCCCCAGGCCACCCCAGCCGGGTCCGTCTCACCTACAAGAGTACCACGTGGTGGAGGGGAGGCTCAGCTTAGAGCATGGGGTGTCCACCCTCGTGCTGTTCTGCGCCCCCCATGGGTCATCGTGATAACACGGGGTACGGTGGATGGCCCTGCAAATGGCCTTCCAAAAGGACGGGTTCAGCGGGCAGGGCTTGTGGAGCCAGGGGTGGGCCCCCCATTCTGTTGCTGATGGGCAGAAGGACCCCGGGTAAGTCCTAGACCCCCCCCAATCTGAGTTTCTTGGAGTAGAAAGCAGGCTGACTGGGTACAGACACCTGCCGGGCTGTGTAAGGATTAAATGAAGACAAAAGAAAACGCATCCTAGGTTCCAGCGTTAGGAAATGCTGATCACAGCCACGCTGCTGCTTCTAGTCCTGAGATCATGACTCAGACGTGACTGACTCCCCAACCTCATCCTCACCCCATGGGGTTGTATTTATTTAGGAAACCCCCACTCCCGCTCTGGGAAATGGATCTAACTCATCTCCATGCTACCTCATCTGATGGCTACATTCTGCCACCCCCACCTCCCCAAATGCGCACAAGAACCAGAACTGCAAAATGCGGTCCCGG	-			P-0011092-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			516	167	571	0	ENST00000220592.5:c.790+60_795del		p.X264_splice	ENST00000220592	NM_012154.3	264																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	14	588	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
CDH1	0	MSKCC	GRCh37	16	68867376	68867378	+	frameshift_variant	Frame_Shift_Del	DEL	ATG	ATG	T			P-0024631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	153	444	0	ENST00000261769.5:c.2623_2625delinsT	p.Met875LeufsTer39	p.M875Lfs*39	ENST00000261769	NM_004360.3	875	ATG/T																																																																														
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	314	488	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424159	49424181	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCGATGGGGGTGGGGTGGGG	GCACCGATGGGGGTGGGGTGGGG	-			P-0024867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	240	434	0	ENST00000301067.7:c.13881_13903del	p.Pro4628AlafsTer11	p.P4628Afs*11	ENST00000301067	NM_003482.3	4627	ccCCCCACCCCACCCCCATCGGTGCag/ccag																																																																														
CUL3	0	MSKCC	GRCh37	2	225449704	225449705	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0024867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	112	267	0	ENST00000264414.4:c.22_23del	p.Thr8GlyfsTer19	p.T8Gfs*19	ENST00000264414	NM_003590.4	8	ACg/g																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794482	242794482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	279	497	0	ENST00000334409.5:c.460G>T	p.Ala154Ser	p.A154S	ENST00000334409	NM_005018.2	154	Gcc/Tcc																																																																														
MDC1	0	MSKCC	GRCh37	6	30671579	30671579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	316	411	1	ENST00000376406.3:c.5381C>A	p.Ala1794Glu	p.A1794E	ENST00000376406	NM_014641.2	1794	gCa/gAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	59	296	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0025079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	75	357	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696428	47696428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	79	486	0	ENST00000347630.2:c.395G>A	p.Gly132Glu	p.G132E	ENST00000347630	NM_001007230.1	132	gGa/gAa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808919	1808920	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGAC			P-0025079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	81	474	0	ENST00000260795.2:c.2353_2356dup	p.Asp786GlyfsTer32	p.D786Gfs*32	ENST00000260795		784	ggg/ggGGACg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	90	557	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971101	21971101	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	53	383	0	ENST00000361570.3:c.423C>A	p.Cys141Ter	p.C141*	ENST00000361570	NM_058195.3	141	tgC/tgA																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971101	21971101	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	53	383	0	ENST00000361570.3:c.423C>A	p.Cys141Ter	p.C141*	ENST00000361570	NM_058195.3	141	tgC/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7579349	7579349	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	100	548	0	ENST00000269305.4:c.338del	p.Phe113SerfsTer10	p.F113Sfs*10	ENST00000269305	NM_001126112.2	113	tTc/tc																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250661	26250661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	40	498	0	ENST00000446824.2:c.173C>T	p.Ser58Leu	p.S58L	ENST00000446824	NM_021018.2	58	tCg/tTg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971101	21971101	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	53	383	0	ENST00000361570.3:c.423C>A	p.Cys141Ter	p.C141*	ENST00000361570	NM_058195.3	141	tgC/tgA																																																																														
RBM10	0	MSKCC	GRCh37	X	47041046	47041046	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0025085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	48	265	0	ENST00000329236.7:c.1341+1G>A		p.X447_splice	ENST00000329236	NM_001204466.1	447																																																																															
ATM	0	MSKCC	GRCh37	11	108201089	108201089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	76	489	0	ENST00000278616.4:c.7456C>G	p.Arg2486Gly	p.R2486G	ENST00000278616	NM_000051.3	2486	Cga/Gga																																																																														
NSD1	0	MSKCC	GRCh37	5	176665248	176665248	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	38	306	0	ENST00000439151.2:c.3932G>T	p.Arg1311Leu	p.R1311L	ENST00000439151	NM_022455.4	1311	cGc/cTc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696449	47696449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	270	454	0	ENST00000347630.2:c.374T>G	p.Phe125Cys	p.F125C	ENST00000347630	NM_001007230.1	125	tTt/tGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	225	746	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593519	48593519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	180	315	0	ENST00000342988.3:c.1270G>A	p.Asp424Asn	p.D424N	ENST00000342988	NM_005359.5	424	Gat/Aat																																																																														
APC	0	MSKCC	GRCh37	5	112175213	112175213	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0025088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	256	249	0	ENST00000257430.4:c.3922A>T	p.Lys1308Ter	p.K1308*	ENST00000257430	NM_000038.5	1308	Aaa/Taa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604774	48604782	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCT	CCTCCAGCT	-			P-0025088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	278	446	1	ENST00000342988.3:c.1599_1607del	p.Gln534_Leu536del	p.Q534_L536del	ENST00000342988	NM_005359.5	532	gcCCTCCAGCTc/gcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	79	516	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	116	420	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	72	541	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FLT3	0	MSKCC	GRCh37	13	28589306	28589306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	72	372	0	ENST00000241453.7:c.2741C>A	p.Ala914Asp	p.A914D	ENST00000241453	NM_004119.2	914	gCt/gAt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99465609	99465609	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	84	371	0	ENST00000268035.6:c.2434A>G	p.Lys812Glu	p.K812E	ENST00000268035	NM_000875.3	812	Aag/Gag																																																																														
BABAM1	0	MSKCC	GRCh37	19	17384741	17384741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	166	548	1	ENST00000359435.4:c.373C>A	p.Gln125Lys	p.Q125K	ENST00000359435	NM_001033549.1	125	Cag/Aag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36219029	36219029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	144	488	1	ENST00000222270.7:c.4528G>A	p.Ala1510Thr	p.A1510T	ENST00000222270	NM_014727.1	1510	Gcc/Acc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965872	25965872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	125	446	0	ENST00000435504.4:c.3334G>T	p.Gly1112Cys	p.G1112C	ENST00000435504		1112	Ggc/Tgc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25972977	25972977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	66	275	0	ENST00000435504.4:c.1448C>A	p.Pro483Gln	p.P483Q	ENST00000435504		483	cCa/cAa																																																																														
ERG	0	MSKCC	GRCh37	21	39755829	39755829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	31	184	0	ENST00000288319.7:c.936G>T	p.Gln312His	p.Q312H	ENST00000288319	NM_182918.3	312	caG/caT																																																																														
RICTOR	0	MSKCC	GRCh37	5	38982069	38982069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	40	487	0	ENST00000357387.3:c.653G>T	p.Cys218Phe	p.C218F	ENST00000357387	NM_152756.3	218	tGc/tTc																																																																														
APC	0	MSKCC	GRCh37	5	112175969	112175969	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	35	234	0	ENST00000257430.4:c.4678G>T	p.Glu1560Ter	p.E1560*	ENST00000257430	NM_000038.5	1560	Gaa/Taa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468167	50468167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	145	332	0	ENST00000331340.3:c.1402C>T	p.Arg468Trp	p.R468W	ENST00000331340	NM_006060.4	468	Cgg/Tgg																																																																														
XIAP	0	MSKCC	GRCh37	X	123020205	123020205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	90	298	0	ENST00000355640.3:c.693G>T	p.Leu231Phe	p.L231F	ENST00000355640		231	ttG/ttT																																																																														
CIC	0	MSKCC	GRCh37	19	42799129	42799129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139613152		P-0025139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	340	487	0	ENST00000575354.2:c.4613C>T	p.Pro1538Leu	p.P1538L	ENST00000575354	NM_015125.3	1538	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579702	7579702	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0025139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	345	560	0	ENST00000269305.4:c.94del	p.Leu32CysfsTer12	p.L32Cfs*12	ENST00000269305	NM_001126112.2	32	Ctg/tg																																																																														
ROS1	0	MSKCC	GRCh37	6	117642558	117642558	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	441	682	0	ENST00000368508.3:c.5642-1G>T		p.X1881_splice	ENST00000368508	NM_002944.2	1881																																																																															
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	26	820	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	26	1127	0	ENST00000269305.4:c.428T>G	p.Val143Gly	p.V143G	ENST00000269305	NM_001126112.2	143	gTg/gGg																																																																														
RAC1	0	MSKCC	GRCh37	7	6431642	6431642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	21	613	0	ENST00000356142.4:c.195C>A	p.Asp65Glu	p.D65E	ENST00000356142	NM_018890.3	65	gaC/gaA																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0025143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	427	454	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
JAK1	0	MSKCC	GRCh37	1	65303766	65303766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025143-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	207	468	13	ENST00000342505.4:c.2989C>T	p.Arg997Trp	p.R997W	ENST00000342505	NM_002227.2	997	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	288	817	0	ENST00000269305.4:c.653T>A	p.Val218Glu	p.V218E	ENST00000269305	NM_001126112.2	218	gTg/gAg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523292	176523292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	201	780	0	ENST00000292408.4:c.1949G>A	p.Arg650His	p.R650H	ENST00000292408	NM_213647.1	650	cGc/cAc																																																																														
FANCA	0	MSKCC	GRCh37	16	89813248	89813248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	48	663	0	ENST00000389301.3:c.3399C>G	p.His1133Gln	p.H1133Q	ENST00000389301	NM_000135.2	1133	caC/caG																																																																														
TET2	0	MSKCC	GRCh37	4	106157827	106157827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	143	320	0	ENST00000380013.4:c.2728C>A	p.Gln910Lys	p.Q910K	ENST00000380013	NM_001127208.2	910	Caa/Aaa																																																																														
ARID2	0	MSKCC	GRCh37	12	46231462	46231462	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	311	339	0	ENST00000334344.6:c.1306delA	p.Ile436LeufsTer4	p.I436Lfs*4	ENST00000334344	NM_152641.2	434	acA/ac																																																																														
ELF3	0	MSKCC	GRCh37	1	201981116	201981117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	278	657	0	ENST00000359651.3:c.197dup	p.Trp67LeufsTer25	p.W67Lfs*25	ENST00000359651		65	-/T																																																																														
SESN3	0	MSKCC	GRCh37	11	94918430	94918430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	81	472	0	ENST00000536441.1:c.752G>A	p.Ser251Asn	p.S251N	ENST00000536441	NM_144665.3	251	aGc/aAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25378559	25378559	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	458	506	0	ENST00000256078.4:c.439A>G	p.Lys147Glu	p.K147E	ENST00000256078	NM_033360.2	147	Aag/Gag																																																																														
FLT1	0	MSKCC	GRCh37	13	29002006	29002006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	339	514	0	ENST00000282397.4:c.1159G>A	p.Gly387Ser	p.G387S	ENST00000282397	NM_002019.4	387	Ggc/Agc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532474	63532474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	369	665	1	ENST00000307078.5:c.2105G>A	p.Arg702His	p.R702H	ENST00000307078	NM_004655.3	702	cGc/cAc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67522726	67522726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	106	221	0	ENST00000274335.5:c.223G>T	p.Glu75Ter	p.E75*	ENST00000274335		75	Gaa/Taa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591108	67591134	+	inframe_deletion	In_Frame_Del	DEL	ACCAGACCTTATCCAGCTGAGAAAGAC	ACCAGACCTTATCCAGCTGAGAAAGAC	-			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	96	305	0	ENST00000274335.5:c.1701_1727del	p.Pro568_Thr576del	p.P568_T576del	ENST00000274335		567	aaACCAGACCTTATCCAGCTGAGAAAGACg/aag																																																																														
APC	0	MSKCC	GRCh37	5	112175236	112175237	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	C			P-0025145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	234	235	0	ENST00000257430.4:c.3945_3946delinsC	p.Ala1316LeufsTer5	p.A1316Lfs*5	ENST00000257430	NM_000038.5	1315	tcAGct/tcCct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0025149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	311	567	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0025149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	45	144	0				ENST00000310581	NM_198253.2																																																																																
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	110	400	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858279	27858279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	119	451	0	ENST00000359303.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000359303	NM_003535.2	98	Gag/Aag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873782	151873782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0025149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	89	356	0	ENST00000262189.6:c.8756C>G	p.Ser2919Ter	p.S2919*	ENST00000262189	NM_170606.2	2919	tCa/tGa																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627392	14627392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	233	652	0	ENST00000254322.2:c.678G>C	p.Gln226His	p.Q226H	ENST00000254322	NM_006145.1	226	caG/caC																																																																														
BAP1	0	MSKCC	GRCh37	3	52437213	52437213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	144	660	0	ENST00000460680.1:c.1831G>A	p.Glu611Lys	p.E611K	ENST00000460680	NM_004656.3	611	Gag/Aag																																																																														
LATS1	0	MSKCC	GRCh37	6	150001452	150001452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025149-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	171	636	0	ENST00000253339.5:c.2152G>A	p.Glu718Lys	p.E718K	ENST00000253339		718	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	261	953	0	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg																																																																														
RAD21	0	MSKCC	GRCh37	8	117878877	117878877	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	94	536	0	ENST00000297338.2:c.92A>G	p.His31Arg	p.H31R	ENST00000297338	NM_006265.2	31	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	53	493	1	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0025152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3907	700	676	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577587	7577587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	264	692	2	ENST00000269305.4:c.694A>T	p.Ile232Phe	p.I232F	ENST00000269305	NM_001126112.2	232	Atc/Ttc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514515	103514515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	49	312	0	ENST00000355739.4:c.1016C>T	p.Pro339Leu	p.P339L	ENST00000355739	NM_000123.3	339	cCt/cTt																																																																														
SETD2	0	MSKCC	GRCh37	3	47162249	47162249	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	205	588	1	ENST00000409792.3:c.3877T>A	p.Tyr1293Asn	p.Y1293N	ENST00000409792	NM_014159.6	1293	Tat/Aat																																																																														
TET2	0	MSKCC	GRCh37	4	106197184	106197187	+	frameshift_variant	Frame_Shift_Del	DEL	TGCA	TGCA	-			P-0025152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	218	384	0	ENST00000380013.4:c.5517_5520del	p.Ala1840ArgfsTer46	p.A1840Rfs*46	ENST00000380013	NM_001127208.2	1839	ggTGCA/gg																																																																														
CDK12	0	MSKCC	GRCh37	17	37618954	37618954	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	444	621	0	ENST00000447079.4:c.630C>A	p.Tyr210Ter	p.Y210*	ENST00000447079	NM_015083.1	210	taC/taA																																																																														
CDK12	0	MSKCC	GRCh37	17	37619371	37619371	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	169	323	1	ENST00000447079.4:c.1046+1G>T		p.X349_splice	ENST00000447079	NM_015083.1	349																																																																															
GSK3B	0	MSKCC	GRCh37	3	119631557	119631562	+	inframe_deletion	In_Frame_Del	DEL	TAGAGG	TAGAGG	-			P-0025153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	226	360	0	ENST00000316626.5:c.704_709del	p.Thr235_Ser236del	p.T235_S236del	ENST00000316626		235	aCCTCTAgt/agt																																																																														
STK19	0	MSKCC	GRCh37	6	31946709	31946709	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	371	702	0	ENST00000375331.2:c.597A>T	p.Arg199Ser	p.R199S	ENST00000375331	NM_004197.1	199	agA/agT																																																																														
TP53	0	MSKCC	GRCh37	17	7579316	7579317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	279	579	0	ENST00000269305.4:c.370dupT	p.Cys124LeufsTer25	p.C124Lfs*25	ENST00000269305	NM_001126112.2	124	tgc/tTgc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138374298	138374298	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	153	681	0	ENST00000289153.2:c.3146T>G	p.Leu1049Arg	p.L1049R	ENST00000289153	NM_006219.2	1049	cTc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7579377	7579377	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	360	768	0	ENST00000269305.4:c.310del	p.Gln104ArgfsTer19	p.Q104Rfs*19	ENST00000269305	NM_001126112.2	104	Cag/ag																																																																														
FLT4	0	MSKCC	GRCh37	5	180038330	180038330	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0025156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	117	475	0	ENST00000261937.6:c.3686+1G>T		p.X1229_splice	ENST00000261937	NM_182925.4	1229																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32163836	32163836	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025156-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	129	491	0	ENST00000375023.3:c.5390A>T	p.Asp1797Val	p.D1797V	ENST00000375023	NM_004557.3	1797	gAc/gTc																																																																														
IKBKE	0	MSKCC	GRCh37	1	206649566	206649566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	87	474	0	ENST00000367120.3:c.401G>A	p.Arg134His	p.R134H	ENST00000367120	NM_014002.3	134	cGc/cAc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	97	483	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
BCOR	0	MSKCC	GRCh37	X	39933445	39933445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	44	507	4	ENST00000378444.4:c.1154C>T	p.Ala385Val	p.A385V	ENST00000378444	NM_001123385.1	385	gCg/gTg																																																																														
RYBP	0	MSKCC	GRCh37	3	72428521	72428530	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGGCATAC	GGTGGCATAC	-			P-0025158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	107	472	0	ENST00000477973.2:c.472_481del	p.Gln158HisfsTer47	p.Q158Hfs*47	ENST00000477973	NM_012234.5	158	caGTATGCCACC/ca																																																																														
FAT1	0	MSKCC	GRCh37	4	187630252	187630252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	53	523	0	ENST00000441802.2:c.730A>G	p.Thr244Ala	p.T244A	ENST00000441802	NM_005245.3	244	Acg/Gcg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93964492	93964492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	63	560	0	ENST00000369303.4:c.2405G>A	p.Trp802Ter	p.W802*	ENST00000369303	NM_004440.3	802	tGg/tAg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412301	63412301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	25	807	0	ENST00000330258.3:c.866C>A	p.Thr289Lys	p.T289K	ENST00000330258	NM_152424.3	289	aCa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	184	624	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	94	576	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	28	624	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	11	229	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	15	428	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	135	257	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	138	423	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16056703	16056704	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	100	459	0	ENST00000268712.3:c.738dupA	p.Ala247SerfsTer6	p.A247Sfs*6	ENST00000268712	NM_006311.3	246	-/A																																																																														
NCOR1	0	MSKCC	GRCh37	17	16004982	16004982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	73	564	0	ENST00000268712.3:c.2272G>A	p.Glu758Lys	p.E758K	ENST00000268712	NM_006311.3	758	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112163688	112163688	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	129	345	0	ENST00000257430.4:c.1611del	p.Ser537ArgfsTer12	p.S537Rfs*12	ENST00000257430	NM_000038.5	537	agT/ag																																																																														
ATRX	0	MSKCC	GRCh37	X	76938121	76938121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	306	332	0	ENST00000373344.5:c.2627C>G	p.Ser876Cys	p.S876C	ENST00000373344	NM_000489.3	876	tCt/tGt																																																																														
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	222	442	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
POLD1	0	MSKCC	GRCh37	19	50919758	50919758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	272	351	0	ENST00000440232.2:c.2926G>A	p.Glu976Lys	p.E976K	ENST00000440232	NM_002691.3	976	Gag/Aag																																																																														
POLD1	0	MSKCC	GRCh37	19	50919689	50919689	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1451	323	432	0	ENST00000440232.2:c.2857G>C	p.Asp953His	p.D953H	ENST00000440232	NM_002691.3	953	Gac/Cac																																																																														
POLD1	0	MSKCC	GRCh37	19	50919707	50919707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1419	302	399	1	ENST00000440232.2:c.2875G>A	p.Glu959Lys	p.E959K	ENST00000440232	NM_002691.3	959	Gag/Aag																																																																														
POLD1	0	MSKCC	GRCh37	19	50919872	50919872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	225	319	0	ENST00000440232.2:c.2959G>A	p.Asp987Asn	p.D987N	ENST00000440232	NM_002691.3	987	Gac/Aac																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871129	12871129	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025187-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	178	246	0	ENST00000228872.4:c.357del	p.Ile119MetfsTer26	p.I119Mfs*26	ENST00000228872	NM_004064.3	119	aTt/at																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11924320	11924320	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0025187-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			33	86	142	0	ENST00000353533.5:c.115+2T>A		p.X39_splice	ENST00000353533	NM_003010.3	39																																																																															
RTEL1	0	MSKCC	GRCh37	20	62323146	62323146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025187-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1488	1173	436	0	ENST00000508582.2:c.2680G>A	p.Glu894Lys	p.E894K	ENST00000508582		894	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	115	558	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	237	623	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	119	523	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	40	449	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11107000	11107000	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141090393		P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	146	439	0	ENST00000344626.4:c.1705C>T	p.Arg569Trp	p.R569W	ENST00000344626	NM_003072.3	569	Cgg/Tgg																																																																														
E2F3	0	MSKCC	GRCh37	6	20481454	20481455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	89	331	0	ENST00000346618.3:c.529dup	p.Thr177AsnfsTer4	p.T177Nfs*4	ENST00000346618	NM_001949.4	175	gaa/gAaa																																																																														
GATA3	0	MSKCC	GRCh37	10	8106016	8106016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	100	446	1	ENST00000346208.3:c.836C>T	p.Thr279Met	p.T279M	ENST00000346208		279	aCg/aTg																																																																														
TSC1	0	MSKCC	GRCh37	9	135772005	135772005	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	36	367	0	ENST00000298552.3:c.3112A>G	p.Ser1038Gly	p.S1038G	ENST00000298552	NM_001162426.1	1038	Agc/Ggc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434356	121434356	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	185	522	1	ENST00000257555.6:c.1124del	p.Gly375AlafsTer9	p.G375Afs*9	ENST00000257555		374	Ggg/gg																																																																														
MTOR	0	MSKCC	GRCh37	1	11300569	11300569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	98	569	1	ENST00000361445.4:c.1577G>A	p.Arg526His	p.R526H	ENST00000361445	NM_004958.3	526	cGt/cAt																																																																														
CIC	0	MSKCC	GRCh37	19	42794950	42794950	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141594034		P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	140	629	0	ENST00000575354.2:c.2030G>A	p.Arg677Gln	p.R677Q	ENST00000575354	NM_015125.3	677	cGg/cAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105746	27105746	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	104	336	0	ENST00000324856.7:c.5357A>C	p.Glu1786Ala	p.E1786A	ENST00000324856	NM_006015.4	1786	gAg/gCg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850865	63850865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	154	392	0	ENST00000279873.7:c.1643C>T	p.Ala548Val	p.A548V	ENST00000279873	NM_032199.2	548	gCc/gTc																																																																														
PAK1	0	MSKCC	GRCh37	11	77064624	77064624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	180	538	1	ENST00000356341.3:c.793G>A	p.Asp265Asn	p.D265N	ENST00000356341	NM_002576.4	265	Gat/Aat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433950	49433950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	215	574	0	ENST00000301067.7:c.7603C>T	p.Arg2535Cys	p.R2535C	ENST00000301067	NM_003482.3	2535	Cgt/Tgt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435254	49435254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	229	592	2	ENST00000301067.7:c.6299C>T	p.Pro2100Leu	p.P2100L	ENST00000301067	NM_003482.3	2100	cCg/cTg																																																																														
RB1	0	MSKCC	GRCh37	13	49033822	49033822	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	202	385	0	ENST00000267163.4:c.1961-2A>C		p.X654_splice	ENST00000267163	NM_000321.2	654																																																																															
ZFHX3	0	MSKCC	GRCh37	16	72827589	72827589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	147	561	0	ENST00000268489.5:c.8992C>T	p.Arg2998Trp	p.R2998W	ENST00000268489	NM_006885.3	2998	Cgg/Tgg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78857732	78857732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	132	561	0	ENST00000306801.3:c.1802A>G	p.His601Arg	p.H601R	ENST00000306801	NM_020761.2	601	cAt/cGt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222835	5222835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	112	592	0	ENST00000357368.4:c.2968G>A	p.Gly990Ser	p.G990S	ENST00000357368	NM_002850.3	990	Ggc/Agc																																																																														
MSH6	0	MSKCC	GRCh37	2	48030687	48030688	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	258	413	0	ENST00000234420.5:c.3301_3302del	p.Lys1101AspfsTer6	p.K1101Dfs*6	ENST00000234420	NM_000179.2	1101	AAg/g																																																																														
EP300	0	MSKCC	GRCh37	22	41566457	41566457	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	112	454	0	ENST00000263253.7:c.4334A>G	p.Asp1445Gly	p.D1445G	ENST00000263253	NM_001429.3	1445	gAt/gGt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52678790	52678790	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	152	350	0	ENST00000394830.3:c.829A>T	p.Lys277Ter	p.K277*	ENST00000394830	NM_018313.4	277	Aaa/Taa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178937422	178937422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	36	205	0	ENST00000263967.3:c.1810T>C	p.Cys604Arg	p.C604R	ENST00000263967	NM_006218.2	604	Tgt/Cgt																																																																														
SDHA	0	MSKCC	GRCh37	5	225652	225652	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	259	518	0	ENST00000264932.6:c.431A>T	p.Glu144Val	p.E144V	ENST00000264932	NM_004168.2	144	gAg/gTg																																																																														
SOX17	0	MSKCC	GRCh37	8	55372112	55372112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	45	512	0	ENST00000297316.4:c.802G>A	p.Gly268Ser	p.G268S	ENST00000297316	NM_022454.3	268	Ggt/Agt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8376665	8376665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	94	565	1	ENST00000356435.5:c.4448C>T	p.Thr1483Met	p.T1483M	ENST00000356435		1483	aCg/aTg																																																																														
RET	0	MSKCC	GRCh37	10	43610162	43610163	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AG			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	66	581	4	ENST00000355710.3:c.2114_2115delinsAG	p.Ser705Ter	p.S705*	ENST00000355710	NM_020975.4	705	tCC/tAG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	223	641	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444755	49444755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	243	709	0	ENST00000301067.7:c.2711G>A	p.Gly904Glu	p.G904E	ENST00000301067	NM_003482.3	904	gGg/gAg																																																																														
FLT1	0	MSKCC	GRCh37	13	28880827	28880827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	181	588	1	ENST00000282397.4:c.3803C>T	p.Ser1268Leu	p.S1268L	ENST00000282397	NM_002019.4	1268	tCg/tTg																																																																														
SLX4	0	MSKCC	GRCh37	16	3640904	3640904	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	37	716	0	ENST00000294008.3:c.2735del	p.Gly912GlufsTer89	p.G912Efs*89	ENST00000294008	NM_032444.2	912	gGa/ga																																																																														
CDH1	0	MSKCC	GRCh37	16	68835650	68835650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	145	537	0	ENST00000261769.5:c.241G>A	p.Gly81Ser	p.G81S	ENST00000261769	NM_004360.3	81	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	250	607	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
JAK3	0	MSKCC	GRCh37	19	17952239	17952239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	76	545	0	ENST00000458235.1:c.1101G>T	p.Arg367Ser	p.R367S	ENST00000458235	NM_000215.3	367	agG/agT																																																																														
JAK3	0	MSKCC	GRCh37	19	17953399	17953399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	91	565	0	ENST00000458235.1:c.587C>A	p.Pro196Gln	p.P196Q	ENST00000458235	NM_000215.3	196	cCa/cAa																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25464512	25464512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	106	595	0	ENST00000264709.3:c.2001G>T	p.Glu667Asp	p.E667D	ENST00000264709	NM_175629.2	667	gaG/gaT																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098815	178098815	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	127	610	0	ENST00000397062.3:c.230A>T	p.Asp77Val	p.D77V	ENST00000397062	NM_006164.4	77	gAt/gTt																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794118	242794118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	90	582	1	ENST00000334409.5:c.610C>A	p.Arg204Ser	p.R204S	ENST00000334409	NM_005018.2	204	Cgc/Agc																																																																														
MITF	0	MSKCC	GRCh37	3	69998286	69998286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	108	461	2	ENST00000352241.4:c.847G>T	p.Ala283Ser	p.A283S	ENST00000352241	NM_198159.2	283	Gcc/Tcc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134514485	134514485	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	78	480	0	ENST00000398015.3:c.12T>A	p.Asp4Glu	p.D4E	ENST00000398015	NM_004441.4	4	gaT/gaA																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55140703	55140703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	91	486	0	ENST00000257290.5:c.1564C>T	p.Arg522Cys	p.R522C	ENST00000257290	NM_006206.4	522	Cgt/Tgt																																																																														
SDHA	0	MSKCC	GRCh37	5	225654	225654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	92	537	0	ENST00000264932.6:c.433C>A	p.Gln145Lys	p.Q145K	ENST00000264932	NM_004168.2	145	Cag/Aag																																																																														
CSF1R	0	MSKCC	GRCh37	5	149441149	149441149	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	64	541	0	ENST00000286301.3:c.1763T>A	p.Leu588His	p.L588H	ENST00000286301	NM_005211.3	588	cTc/cAc																																																																														
E2F3	0	MSKCC	GRCh37	6	20481435	20481435	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	38	276	0	ENST00000346618.3:c.506-2A>T		p.X169_splice	ENST00000346618	NM_001949.4	169																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32168916	32168916	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	71	631	0	ENST00000375023.3:c.4117G>T	p.Glu1373Ter	p.E1373*	ENST00000375023	NM_004557.3	1373	Gag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	152012244	152012244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	215	479	0	ENST00000262189.6:c.569G>C	p.Arg190Pro	p.R190P	ENST00000262189	NM_170606.2	190	cGa/cCa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8523526	8523526	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	125	343	0	ENST00000356435.5:c.680-2A>T		p.X227_splice	ENST00000356435		227																																																																															
NTRK2	0	MSKCC	GRCh37	9	87570280	87570280	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	74	447	0	ENST00000277120.3:c.2020C>G	p.Gln674Glu	p.Q674E	ENST00000277120		674	Cag/Gag																																																																														
ATRX	0	MSKCC	GRCh37	X	76849320	76849320	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	91	436	1	ENST00000373344.5:c.5957-1G>T		p.X1986_splice	ENST00000373344	NM_000489.3	1986																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	97	278	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	203	472	3	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	119	285	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	101	386	3	ENST00000342988.3:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000342988	NM_005359.5	363	tGt/tTt																																																																														
KRAS	0	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	138	439	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480459	89480459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	124	257	3	ENST00000336596.2:c.2296G>A	p.Gly766Arg	p.G766R	ENST00000336596	NM_005233.5	766	Gga/Aga																																																																														
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	111	249	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031883	26031884	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	105	161	2	ENST00000244661.2:c.405_406delAG	p.Arg135SerfsTer12	p.R135Sfs*12	ENST00000244661	NM_003537.3	135	agAGcg/agcg																																																																														
KDR	0	MSKCC	GRCh37	4	55964358	55964358	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	172	407	0	ENST00000263923.4:c.2455C>T	p.Arg819Ter	p.R819*	ENST00000263923	NM_002253.2	819	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603007	48603007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	100	264	0	ENST00000342988.3:c.1309-1G>T		p.X437_splice	ENST00000342988	NM_005359.5	437																																																																															
MTOR	0	MSKCC	GRCh37	1	11188153	11188153	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	190	408	0	ENST00000361445.4:c.5941A>G	p.Lys1981Glu	p.K1981E	ENST00000361445	NM_004958.3	1981	Aag/Gag																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870872	12870873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	84	159	0	ENST00000228872.4:c.101dup	p.Val36GlyfsTer89	p.V36Gfs*89	ENST00000228872	NM_004064.3	33	-/G																																																																														
SETD2	0	MSKCC	GRCh37	3	47059226	47059226	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	37	290	0	ENST00000409792.3:c.7435T>C	p.Ser2479Pro	p.S2479P	ENST00000409792	NM_014159.6	2479	Tcc/Ccc																																																																														
BRAF	0	MSKCC	GRCh37	7	140481391	140481392	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0025192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	96	354	0	ENST00000288602.6:c.1414_1416dup	p.Tyr472dup	p.Y472dup	ENST00000288602	NM_004333.4	472	-/TAC																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	286	524	5	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	171	335	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
NF1	0	MSKCC	GRCh37	17	29585361	29585361	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	279	445	0	ENST00000358273.4:c.4174-1G>A		p.X1392_splice	ENST00000358273	NM_001042492.2	1392																																																																															
FAT1	0	MSKCC	GRCh37	4	187540958	187540958	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189912205		P-0025194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	122	319	0	ENST00000441802.2:c.6782C>T	p.Thr2261Met	p.T2261M	ENST00000441802	NM_005245.3	2261	aCg/aTg																																																																														
KDM5A	0	MSKCC	GRCh37	12	404903	404903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	213	584	2	ENST00000399788.2:c.4291G>A	p.Glu1431Lys	p.E1431K	ENST00000399788	NM_001042603.1	1431	Gaa/Aaa																																																																														
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	310	299	0	ENST00000369535.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000369535	NM_002524.4	12	Ggt/Agt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88727490	88727490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	19	361	0	ENST00000360948.2:c.289G>A	p.Val97Met	p.V97M	ENST00000360948	NM_001012338.2	97	Gtg/Atg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991700	72991700	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	40	205	0	ENST00000268489.5:c.2345del	p.Ala782GlyfsTer42	p.A782Gfs*42	ENST00000268489	NM_006885.3	782	gCg/gg																																																																														
U2AF1	0	MSKCC	GRCh37	21	44514606	44514606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	88	369	0	ENST00000291552.4:c.550G>A	p.Glu184Lys	p.E184K	ENST00000291552	NM_006758.2	184	Gag/Aag																																																																														
CCND1	0	MSKCC	GRCh37	11	69465904	69465904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1186	64	476	0	ENST00000227507.2:c.742C>A	p.Gln248Lys	p.Q248K	ENST00000227507	NM_053056.2	248	Cag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	DEL	C	C	-			P-0025198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	286	451	0	ENST00000269305.4:c.920-1del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
PTPRT	0	MSKCC	GRCh37	20	41101119	41101119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	209	467	0	ENST00000373198.4:c.1237G>A	p.Ala413Thr	p.A413T	ENST00000373198	NM_133170.3	413	Gcg/Acg																																																																														
PNRC1	0	MSKCC	GRCh37	6	89790650	89790650	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs147772027		P-0025198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	111	458	4	ENST00000336032.3:c.37G>T	p.Val13Phe	p.V13F	ENST00000336032	NM_006813.2	13	Gtc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	196	634	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	55	650	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243512	41243512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	116	731	1	ENST00000357654.3:c.4036G>A	p.Glu1346Lys	p.E1346K	ENST00000357654	NM_007294.3	1346	Gaa/Aaa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971102	21971102	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	55	395	0	ENST00000304494.5:c.256del	p.Ala86ProfsTer60	p.A86Pfs*60	ENST00000304494	NM_000077.4	86	Gcc/cc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971102	21971102	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	55	395	0	ENST00000304494.5:c.256del	p.Ala86ProfsTer60	p.A86Pfs*60	ENST00000304494	NM_000077.4	86	Gcc/cc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971102	21971102	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	55	395	0	ENST00000304494.5:c.256del	p.Ala86ProfsTer60	p.A86Pfs*60	ENST00000304494	NM_000077.4	86	Gcc/cc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101908852	101908852	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	73	600	0	ENST00000374994.4:c.1217del	p.Leu406Ter	p.L406*	ENST00000374994	NM_004612.2	406	Tta/ta																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	46	494	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	544	556	9	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	62	419	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	94	389	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	150	425	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	193	661	20	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	26	347	3	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																																																														
MAPK1	0	MSKCC	GRCh37	22	22221709	22221714	+	inframe_deletion	In_Frame_Del	DEL	CCGCCG	CCGCCG	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	53	161	3	ENST00000215832.6:c.17_22del	p.Ala6_Ala7del	p.A6_A7del	ENST00000215832	NM_002745.4	6	gCGGCGGgc/ggc																																																																														
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	90	436	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	96	354	5	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
BCOR	0	MSKCC	GRCh37	X	39913253	39913253	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	262	287	0	ENST00000378444.4:c.4862delC	p.Pro1621GlnfsTer53	p.P1621Qfs*53	ENST00000378444	NM_001123385.1	1621	cCa/ca																																																																														
PAX5	0	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	240	732	5	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																														
CIC	0	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1758	411	894	0	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	61	506	8	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
TET1	0	MSKCC	GRCh37	10	70332471	70332471	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	124	585	0	ENST00000373644.4:c.380delA	p.Lys127ArgfsTer8	p.K127Rfs*8	ENST00000373644	NM_030625.2	126	Aaa/aa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1392	310	543	1	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																														
CARD11	84433	MSKCC	GRCh37	7	2983877	2983877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	188	740	0	ENST00000396946.4:c.653C>T	p.Ala218Val	p.A218V	ENST00000396946	NM_032415.4	218	gCg/gTg																																																																														
JUN	0	MSKCC	GRCh37	1	59248394	59248394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	84	395	0	ENST00000371222.2:c.349G>A	p.Ala117Thr	p.A117T	ENST00000371222	NM_002228.3	117	Gcc/Acc																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	23	695	4	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	85	697	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
DNMT1	0	MSKCC	GRCh37	19	10262102	10262102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1210	89	691	1	ENST00000340748.4:c.2189G>A	p.Arg730His	p.R730H	ENST00000340748		730	cGc/cAc																																																																														
FLT4	0	MSKCC	GRCh37	5	180047659	180047659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	207	651	3	ENST00000261937.6:c.2356G>A	p.Ala786Thr	p.A786T	ENST00000261937	NM_182925.4	786	Gct/Act																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421039	49421039	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	82	483	3	ENST00000301067.7:c.14710C>T	p.Arg4904Ter	p.R4904*	ENST00000301067	NM_003482.3	4904	Cga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435199	49435199	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	74	530	1	ENST00000301067.7:c.6354delC	p.Ala2119LeufsTer25	p.A2119Lfs*25	ENST00000301067	NM_003482.3	2118	ccC/cc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10291084	10291084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	261	644	1	ENST00000340748.4:c.387del	p.Lys130AsnfsTer129	p.K130Nfs*129	ENST00000340748		129	ccC/cc																																																																														
RECQL	0	MSKCC	GRCh37	12	21624390	21624390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	61	565	1	ENST00000421138.2:c.1639G>A	p.Ala547Thr	p.A547T	ENST00000421138		547	Gca/Aca																																																																														
POLE	0	MSKCC	GRCh37	12	133209267	133209267	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs5745021		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	243	609	1	ENST00000320574.5:c.6119C>T	p.Ala2040Val	p.A2040V	ENST00000320574	NM_006231.2	2040	gCg/gTg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67459188	67459188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	216	511	0	ENST00000327367.4:c.604G>A	p.Ala202Thr	p.A202T	ENST00000327367	NM_005902.3	202	Gca/Aca																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581192	48581193	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	98	404	0	ENST00000342988.3:c.497_498del	p.Phe166Ter	p.F166*	ENST00000342988	NM_005359.5	166	TTt/t																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306664	41306664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	156	649	0	ENST00000373198.4:c.995G>A	p.Gly332Asp	p.G332D	ENST00000373198	NM_133170.3	332	gGc/gAc																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056175	26056175	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61742489		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	288	448	0	ENST00000343677.2:c.482C>T	p.Pro161Leu	p.P161L	ENST00000343677	NM_005319.3	161	cCg/cTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11188975	11188975	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	60	666	0	ENST00000361445.4:c.5748G>A	p.Trp1916Ter	p.W1916*	ENST00000361445	NM_004958.3	1916	tgG/tgA																																																																														
SPEN	0	MSKCC	GRCh37	1	16255619	16255619	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	150	469	0	ENST00000375759.3:c.2884A>G	p.Lys962Glu	p.K962E	ENST00000375759	NM_015001.2	962	Aag/Gag																																																																														
CSDE1	0	MSKCC	GRCh37	1	115261278	115261278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	219	559	0	ENST00000438362.2:c.2443C>T	p.Arg815Cys	p.R815C	ENST00000438362	NM_001242891.1	815	Cgc/Tgc																																																																														
MCL1	0	MSKCC	GRCh37	1	150551942	150551942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1341	277	467	0	ENST00000369026.2:c.65G>T	p.Gly22Val	p.G22V	ENST00000369026	NM_021960.4	22	gGg/gTg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18800808	18800808	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	22	352	0	ENST00000266497.5:c.4186-2A>G		p.X1396_splice	ENST00000266497		1396																																																																															
GLI1	0	MSKCC	GRCh37	12	57859570	57859570	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	65	467	0	ENST00000228682.2:c.625-1G>A		p.X209_splice	ENST00000228682	NM_005269.2	209																																																																															
SOCS1	0	MSKCC	GRCh37	16	11349139	11349139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	211	357	1	ENST00000332029.2:c.197G>A	p.Arg66His	p.R66H	ENST00000332029	NM_003745.1	66	cGc/cAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830964	72830964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	112	477	2	ENST00000268489.5:c.5617C>T	p.His1873Tyr	p.H1873Y	ENST00000268489	NM_006885.3	1873	Cac/Tac																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7983223	7983225	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	292	558	0	ENST00000319144.4:c.789_791del	p.Phe264del	p.F264del	ENST00000319144	NM_001139.2	263	ttCTTt/ttt																																																																														
INPP4A	0	MSKCC	GRCh37	2	99155436	99155436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	113	355	0	ENST00000074304.5:c.662T>C	p.Leu221Pro	p.L221P	ENST00000074304	NM_001134224.1	221	cTg/cCg																																																																														
EP300	0	MSKCC	GRCh37	22	41523513	41523513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	169	459	0	ENST00000263253.7:c.929T>C	p.Val310Ala	p.V310A	ENST00000263253	NM_001429.3	310	gTc/gCc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026124	71026127	+	frameshift_variant	Frame_Shift_Del	DEL	CAAA	CAAA	-			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	150	444	0	ENST00000318789.4:c.1495_1498del	p.Phe499LeufsTer27	p.F499Lfs*27	ENST00000318789	NM_032682.5	499	TTTGct/ct																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138461564	138461564	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202220571		P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	66	514	1	ENST00000289153.2:c.457C>T	p.Arg153Cys	p.R153C	ENST00000289153	NM_006219.2	153	Cgc/Tgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187516975	187516975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	59	378	0	ENST00000441802.2:c.13006G>A	p.Val4336Met	p.V4336M	ENST00000441802	NM_005245.3	4336	Gtg/Atg																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323214	31323214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	254	503	0	ENST00000412585.2:c.775C>T	p.Pro259Ser	p.P259S	ENST00000412585	NM_005514.6	259	Cca/Tca																																																																														
HGF	0	MSKCC	GRCh37	7	81350151	81350151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	17	378	0	ENST00000222390.5:c.1181G>T	p.Gly394Val	p.G394V	ENST00000222390	NM_000601.4	394	gGg/gTg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929028	44929028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	28	218	0	ENST00000377967.4:c.2128C>T	p.Gln710Ter	p.Q710*	ENST00000377967	NM_021140.2	710	Caa/Taa																																																																														
AMER1	0	MSKCC	GRCh37	X	63412123	63412124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	257	455	0	ENST00000330258.3:c.1043dup	p.Gln349ProfsTer29	p.Q349Pfs*29	ENST00000330258	NM_152424.3	348	ggc/ggGc																																																																														
RNF43	0	MSKCC	GRCh37	17	56432330	56432330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	102	459	0	ENST00000407977.2:c.2326G>A	p.Glu776Lys	p.E776K	ENST00000407977		776	Gag/Aag																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430371	78430371	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024951-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	109	586	1	ENST00000370768.2:c.797A>G	p.Asn266Ser	p.N266S	ENST00000370768	NM_003902.3	266	aAt/aGt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426064	49426064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	56	449	1	ENST00000301067.7:c.12424G>T	p.Gly4142Trp	p.G4142W	ENST00000301067	NM_003482.3	4142	Ggg/Tgg																																																																														
CTCF	0	MSKCC	GRCh37	16	67645025	67645025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	54	516	2	ENST00000264010.4:c.290C>T	p.Thr97Ile	p.T97I	ENST00000264010	NM_006565.3	97	aCt/aTt																																																																														
VTCN1	0	MSKCC	GRCh37	1	117695893	117695893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	109	581	1	ENST00000369458.3:c.544G>T	p.Ala182Ser	p.A182S	ENST00000369458	NM_024626.3	182	Gca/Tca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421614	49421614	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	110	636	0	ENST00000301067.7:c.14615A>G	p.Gln4872Arg	p.Q4872R	ENST00000301067	NM_003482.3	4872	cAa/cGa																																																																														
RB1	0	MSKCC	GRCh37	13	48923159	48923159	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0025071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	159	436	0	ENST00000267163.4:c.607+1del		p.G203fs	ENST00000267163	NM_000321.2	203	Ggg/gg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831080	72831080	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	72	307	0	ENST00000268489.5:c.5501A>G	p.Asp1834Gly	p.D1834G	ENST00000268489	NM_006885.3	1834	gAt/gGt																																																																														
SETD2	0	MSKCC	GRCh37	3	47125305	47125305	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	121	533	0	ENST00000409792.3:c.5965G>C	p.Asp1989His	p.D1989H	ENST00000409792	NM_014159.6	1989	Gat/Cat																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845328	151845328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	57	415	0	ENST00000262189.6:c.13684C>T	p.Leu4562Phe	p.L4562F	ENST00000262189	NM_170606.2	4562	Ctt/Ttt																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738104	145738105	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCCAGTGGTGTGGGTGCAGCTCCAGGTAGCA			P-0025071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	89	684	0	ENST00000428558.2:c.2773_2805dup	p.Cys925_Leu935dup	p.C925_L935dup	ENST00000428558	NM_004260.3	925	-/TGCTACCTGGAGCTGCACCCACACCACTGGCTG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	1516	576	2	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7576889	7576890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	310	752	2	ENST00000269305.4:c.956dup	p.Lys320GlufsTer17	p.K320Efs*17	ENST00000269305	NM_001126112.2	319	aag/aaAg																																																																														
IKBKE	0	MSKCC	GRCh37	1	206647713	206647713	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	328	513	0	ENST00000367120.3:c.127A>G	p.Thr43Ala	p.T43A	ENST00000367120	NM_014002.3	43	Acc/Gcc																																																																														
CDK4	0	MSKCC	GRCh37	12	58142981	58142981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	52	749	0	ENST00000257904.6:c.803G>A	p.Gly268Glu	p.G268E	ENST00000257904	NM_000075.3	268	gGa/gAa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822544	72822544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	47	509	0	ENST00000268489.5:c.9631C>T	p.Pro3211Ser	p.P3211S	ENST00000268489	NM_006885.3	3211	Ccc/Tcc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15943793	15943793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	28	516	0	ENST00000268712.3:c.6695G>A	p.Gly2232Glu	p.G2232E	ENST00000268712	NM_006311.3	2232	gGa/gAa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245963	41245963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	76	920	0	ENST00000357654.3:c.1585C>G	p.Pro529Ala	p.P529A	ENST00000357654	NM_007294.3	529	Cct/Gct																																																																														
INSR	0	MSKCC	GRCh37	19	7170755	7170755	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	61	697	0	ENST00000302850.5:c.1276T>G	p.Ser426Ala	p.S426A	ENST00000302850	NM_000208.2	426	Tcc/Gcc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178097128	178097128	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	21	305	0	ENST00000397062.3:c.586G>C	p.Glu196Gln	p.E196Q	ENST00000397062	NM_006164.4	196	Gag/Cag																																																																														
ERG	0	MSKCC	GRCh37	21	39817505	39817505	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	50	580	0	ENST00000288319.7:c.58G>C	p.Glu20Gln	p.E20Q	ENST00000288319	NM_182918.3	20	Gag/Cag																																																																														
BCOR	0	MSKCC	GRCh37	X	39911454	39911454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	50	688	0	ENST00000378444.4:c.5176C>G	p.Leu1726Val	p.L1726V	ENST00000378444	NM_001123385.1	1726	Ctg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	369	804	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																																																														
APC	0	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0025132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	21	298	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																														
RBM10	0	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	G			P-0025132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	25	357	1	ENST00000329236.7:c.201+1688T>G		p.*67*	ENST00000329236	NM_001204466.1																																																																																
MAP2K4	0	MSKCC	GRCh37	17	11984811	11984811	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	38	494	0	ENST00000353533.5:c.358del	p.Val120SerfsTer8	p.V120Sfs*8	ENST00000353533	NM_003010.3	119	atG/at																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42840369	42840369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	45	594	1	ENST00000398585.3:c.1379C>T	p.Ala460Val	p.A460V	ENST00000398585	NM_001135099.1	460	gCc/gTc																																																																														
PREX2	0	MSKCC	GRCh37	8	68931898	68931898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	23	651	0	ENST00000288368.4:c.328C>A	p.Leu110Ile	p.L110I	ENST00000288368	NM_024870.2	110	Ctt/Att																																																																														
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0025136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	606	670	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																																																														
FGFR1	2260	MSKCC	GRCh37	8	38274849	38274849	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	749	511	0	ENST00000425967.3:c.1731C>G	p.Asn577Lys	p.N577K	ENST00000425967	NM_001174067.1	577	aaC/aaG																																																																														
ERCC5	0	MSKCC	GRCh37	13	103514020	103514020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	237	522	0	ENST00000355739.4:c.836G>T	p.Arg279Met	p.R279M	ENST00000355739	NM_000123.3	279	aGg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577050	7577050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025136-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	372	873	1	ENST00000269305.4:c.888C>A	p.His296Gln	p.H296Q	ENST00000269305	NM_001126112.2	296	caC/caA																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	454	671	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ARID2	0	MSKCC	GRCh37	12	46245843	46245843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	384	404	0	ENST00000334344.6:c.3937C>T	p.Gln1313Ter	p.Q1313*	ENST00000334344	NM_152641.2	1313	Caa/Taa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980844	40980844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	272	565	0	ENST00000373198.4:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000373198	NM_133170.3	548	Gaa/Aaa																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	444	540	2	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	132	218	0				ENST00000310581	NM_198253.2																																																																																
HGF	0	MSKCC	GRCh37	7	81346589	81346589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	380	514	1	ENST00000222390.5:c.1364G>A	p.Gly455Glu	p.G455E	ENST00000222390	NM_000601.4	455	gGa/gAa																																																																														
CARD11	0	MSKCC	GRCh37	7	2952942	2952942	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	285	675	0	ENST00000396946.4:c.2998G>A	p.Glu1000Lys	p.E1000K	ENST00000396946	NM_032415.4	1000	Gag/Aag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509612	106509612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	385	580	0	ENST00000359195.3:c.1606C>T	p.Pro536Ser	p.P536S	ENST00000359195	NM_002649.2	536	Cct/Tct																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484270	8484270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	459	606	1	ENST00000356435.5:c.3262C>T	p.Arg1088Cys	p.R1088C	ENST00000356435		1088	Cgt/Tgt																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729162	66729163	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	465	821	3	ENST00000307102.5:c.370_371delCCinsTT	p.Pro124Leu	p.P124L	ENST00000307102	NM_002755.3	124	CCg/TTg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50367234	50367234	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	130	365	0	ENST00000331340.3:c.41G>A	p.Gly14Glu	p.G14E	ENST00000331340	NM_006060.4	14	gGg/gAg																																																																														
SYK	0	MSKCC	GRCh37	9	93624541	93624541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	233	510	0	ENST00000375746.1:c.632G>A	p.Gly211Glu	p.G211E	ENST00000375746	NM_001174167.1	211	gGg/gAg																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612807	228612807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	424	670	0	ENST00000366696.1:c.220G>A	p.Glu74Lys	p.E74K	ENST00000366696	NM_003493.2	74	Gag/Aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89717705	89717705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	445	541	1	ENST00000371953.3:c.730C>T	p.Pro244Ser	p.P244S	ENST00000371953	NM_000314.4	244	Cct/Tct																																																																														
KLF4	0	MSKCC	GRCh37	9	110249881	110249881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	314	477	1	ENST00000374672.4:c.794C>T	p.Pro265Leu	p.P265L	ENST00000374672	NM_004235.4	265	cCc/cTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9546694	9546694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	189	307	0	ENST00000353224.5:c.1328G>A	p.Gly443Glu	p.G443E	ENST00000353224	NM_177990.2	443	gGa/gAa																																																																														
ROS1	0	MSKCC	GRCh37	6	117710750	117710750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	265	425	0	ENST00000368508.3:c.1522G>A	p.Asp508Asn	p.D508N	ENST00000368508	NM_002944.2	508	Gac/Aac																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911493	32911493	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	438	492	0	ENST00000380152.3:c.3001T>C	p.Ser1001Pro	p.S1001P	ENST00000380152		1001	Tca/Cca																																																																														
MGA	0	MSKCC	GRCh37	15	41961969	41961969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	509	495	1	ENST00000219905.7:c.877C>T	p.Arg293Cys	p.R293C	ENST00000219905	NM_001164273.1	293	Cgt/Tgt																																																																														
AXL	0	MSKCC	GRCh37	19	41745117	41745117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	390	753	0	ENST00000301178.4:c.1183G>A	p.Gly395Arg	p.G395R	ENST00000301178	NM_021913.4	395	Ggg/Agg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45868119	45868119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	509	862	2	ENST00000391945.4:c.571C>T	p.Pro191Ser	p.P191S	ENST00000391945	NM_000400.3	191	Cca/Tca																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31384996	31384996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	300	513	1	ENST00000328111.2:c.1381C>T	p.Arg461Cys	p.R461C	ENST00000328111	NM_006892.3	461	Cgc/Tgc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419877	41419878	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	234	544	1	ENST00000373198.4:c.443_444delinsTA	p.Lys148Ile	p.K148I	ENST00000373198	NM_133170.3	148	aAG/aTA																																																																														
RTEL1	0	MSKCC	GRCh37	20	62293236	62293236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	525	681	0	ENST00000508582.2:c.335C>A	p.Ala112Asp	p.A112D	ENST00000508582		112	gCc/gAc																																																																														
PPARG	0	MSKCC	GRCh37	3	12393114	12393114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	416	700	0	ENST00000287820.6:c.23C>T	p.Ser8Phe	p.S8F	ENST00000287820	NM_015869.4	8	tCt/tTt																																																																														
MITF	0	MSKCC	GRCh37	3	69788756	69788757	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	323	409	1	ENST00000352241.4:c.8_9delinsTT	p.Ser3Phe	p.S3F	ENST00000352241	NM_198159.2	3	tCC/tTT																																																																														
FAT1	0	MSKCC	GRCh37	4	187629805	187629805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	678	785	1	ENST00000441802.2:c.1177C>T	p.Pro393Ser	p.P393S	ENST00000441802	NM_005245.3	393	Cct/Tct																																																																														
IL7R	0	MSKCC	GRCh37	5	35876230	35876230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	291	496	0	ENST00000303115.3:c.1022G>A	p.Gly341Glu	p.G341E	ENST00000303115	NM_002185.3	341	gGa/gAa																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911302	29911302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	90	495	0	ENST00000376809.5:c.601G>A	p.Glu201Lys	p.E201K	ENST00000376809	NM_002116.7	201	Gag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32183063	32183063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	518	1003	4	ENST00000375023.3:c.1961G>A	p.Gly654Glu	p.G654E	ENST00000375023	NM_004557.3	654	gGa/gAa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965572	93965572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	371	559	0	ENST00000369303.4:c.2356G>A	p.Asp786Asn	p.D786N	ENST00000369303	NM_004440.3	786	Gat/Aat																																																																														
ESR1	0	MSKCC	GRCh37	6	152129330	152129330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	201	436	2	ENST00000206249.3:c.283G>A	p.Gly95Arg	p.G95R	ENST00000206249	NM_000125.3	95	Ggg/Agg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528952	157528952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	369	492	0	ENST00000346085.5:c.6677C>T	p.Ser2226Leu	p.S2226L	ENST00000346085	NM_020732.3	2226	tCg/tTg																																																																														
MET	0	MSKCC	GRCh37	7	116415001	116415001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	600	722	1	ENST00000397752.3:c.3095C>T	p.Ser1032Phe	p.S1032F	ENST00000397752	NM_000245.2	1032	tCc/tTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845361	151845362	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	362	611	1	ENST00000262189.6:c.13650_13651delinsAA	p.Gly4551Ser	p.G4551S	ENST00000262189	NM_170606.2	4550	gtGGgt/gtAAgt																																																																														
LYN	0	MSKCC	GRCh37	8	56863061	56863061	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	23	699	0	ENST00000519728.1:c.328del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	110	Gaa/aa																																																																														
LYN	0	MSKCC	GRCh37	8	56863061	56863061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	368	699	0	ENST00000519728.1:c.328G>A	p.Glu110Lys	p.E110K	ENST00000519728	NM_002350.3	110	Gaa/Aaa																																																																														
PRDM14	0	MSKCC	GRCh37	8	70970993	70970993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	500	828	0	ENST00000276594.2:c.1268C>T	p.Pro423Leu	p.P423L	ENST00000276594	NM_024504.3	423	cCc/cTc																																																																														
TEK	0	MSKCC	GRCh37	9	27173277	27173277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	548	792	0	ENST00000380036.4:c.818G>A	p.Gly273Glu	p.G273E	ENST00000380036	NM_000459.3	273	gGa/gAa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87285689	87285689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	296	545	0	ENST00000277120.3:c.26G>A	p.Gly9Glu	p.G9E	ENST00000277120		9	gGa/gAa																																																																														
SYK	0	MSKCC	GRCh37	9	93637113	93637113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	305	520	0	ENST00000375746.1:c.1163G>A	p.Gly388Asp	p.G388D	ENST00000375746	NM_001174167.1	388	gGc/gAc																																																																														
BTK	0	MSKCC	GRCh37	X	100613674	100613674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025164-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	324	235	0	ENST00000308731.7:c.905G>A	p.Gly302Glu	p.G302E	ENST00000308731	NM_000061.2	302	gGa/gAa																																																																														
ATM	0	MSKCC	GRCh37	11	108224498	108224498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	45	296	0	ENST00000278616.4:c.8677G>C	p.Ala2893Pro	p.A2893P	ENST00000278616	NM_000051.3	2893	Gct/Cct																																																																														
ATRX	0	MSKCC	GRCh37	X	76939241	76939241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	84	783	0	ENST00000373344.5:c.1507C>G	p.Gln503Glu	p.Q503E	ENST00000373344	NM_000489.3	503	Caa/Gaa																																																																														
MGA	0	MSKCC	GRCh37	15	42041833	42041833	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	74	531	0	ENST00000219905.7:c.6028C>T	p.Gln2010Ter	p.Q2010*	ENST00000219905	NM_001164273.1	2010	Caa/Taa																																																																														
TCF3	0	MSKCC	GRCh37	19	1622073	1622073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	140	718	0	ENST00000344749.5:c.802C>A	p.Leu268Met	p.L268M	ENST00000344749	NM_001136139.2	268	Ctg/Atg																																																																														
SETD2	0	MSKCC	GRCh37	3	47058665	47058680	+	frameshift_variant	Frame_Shift_Del	DEL	TGTTTCACATTCTCAT	TGTTTCACATTCTCAT	-			P-0025167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	34	707	0	ENST00000409792.3:c.7598_7613del	p.Asn2533ThrfsTer26	p.N2533Tfs*26	ENST00000409792	NM_014159.6	2533	aATGAGAATGTGAAACAc/ac																																																																														
PBRM1	0	MSKCC	GRCh37	3	52613124	52613128	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTT	ACCTT	-			P-0025167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	181	504	0	ENST00000394830.3:c.3400_3404del	p.Lys1134TrpfsTer20	p.K1134Wfs*20	ENST00000394830	NM_018313.4	1134	AAGGTt/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	329	671	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PARK2	0	MSKCC	GRCh37	6	162683697	162683697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	65	601	0	ENST00000366898.1:c.272C>T	p.Ala91Val	p.A91V	ENST00000366898	NM_004562.2	91	gCg/gTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248450	212248450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	53	380	0	ENST00000342788.4:c.3817C>T	p.Arg1273Trp	p.R1273W	ENST00000342788	NM_005235.2	1273	Cgg/Tgg																																																																														
ELF3	0	MSKCC	GRCh37	1	201982409	201982409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	143	780	0	ENST00000359651.3:c.788G>A	p.Gly263Asp	p.G263D	ENST00000359651		263	gGc/gAc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114711314	114711314	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	152	454	0	ENST00000543371.1:c.329A>T	p.Asp110Val	p.D110V	ENST00000543371	NM_001198531.1	110	gAc/gTc																																																																														
POLE	0	MSKCC	GRCh37	12	133215712	133215712	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A	rs185498408		P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	136	369	0	ENST00000320574.5:c.5551C>T	p.Gln1851Ter	p.Q1851*	ENST00000320574	NM_006231.2	1851	Cag/Tag																																																																														
FLT1	0	MSKCC	GRCh37	13	28913337	28913337	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	71	770	0	ENST00000282397.4:c.2456A>T	p.Lys819Met	p.K819M	ENST00000282397	NM_002019.4	819	aAg/aTg																																																																														
TOP1	0	MSKCC	GRCh37	20	39728803	39728803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	54	454	1	ENST00000361337.2:c.1083C>A	p.Phe361Leu	p.F361L	ENST00000361337	NM_003286.2	361	ttC/ttA																																																																														
APC	0	MSKCC	GRCh37	5	112175924	112175924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	38	250	0	ENST00000257430.4:c.4633T>C	p.Ser1545Pro	p.S1545P	ENST00000257430	NM_000038.5	1545	Tca/Cca																																																																														
FGFR1	0	MSKCC	GRCh37	8	38279363	38279363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	104	835	1	ENST00000425967.3:c.1126A>G	p.Asn376Asp	p.N376D	ENST00000425967	NM_001174067.1	376	Aac/Gac																																																																														
VHL	0	MSKCC	GRCh37	3	10191590	10191590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs5030825		P-0025173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	119	664	2	ENST00000256474.2:c.583C>T	p.Gln195Ter	p.Q195*	ENST00000256474	NM_000551.3	195	Cag/Tag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18496295	18496295	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0025173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	63	434	0	ENST00000266497.5:c.1429+1G>C		p.X477_splice	ENST00000266497		477																																																																															
UPF1	0	MSKCC	GRCh37	19	18968312	18968312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	70	850	0	ENST00000262803.5:c.2152G>A	p.Glu718Lys	p.E718K	ENST00000262803	NM_002911.3	718	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	18	177	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0025174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	190	683	2	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
CCND3	0	MSKCC	GRCh37	6	41903746	41903746	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200046302		P-0025174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	100	660	0	ENST00000372991.4:c.811C>T	p.Arg271Trp	p.R271W	ENST00000372991	NM_001760.3	271	Cgg/Tgg																																																																														
RB1	0	MSKCC	GRCh37	13	48919281	48919281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0025174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	86	370	0	ENST00000267163.4:c.446C>G	p.Ser149Ter	p.S149*	ENST00000267163	NM_000321.2	149	tCa/tGa																																																																														
DICER1	0	MSKCC	GRCh37	14	95596409	95596409	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	77	474	0	ENST00000343455.3:c.559C>T	p.Arg187Ter	p.R187*	ENST00000343455	NM_177438.2	187	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	642	682	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
BCOR	0	MSKCC	GRCh37	X	39922875	39922875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	248	343	0	ENST00000378444.4:c.3833G>C	p.Ser1278Thr	p.S1278T	ENST00000378444	NM_001123385.1	1278	aGt/aCt																																																																														
NEGR1	0	MSKCC	GRCh37	1	72058596	72058596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	327	632	0	ENST00000357731.5:c.844C>G	p.Leu282Val	p.L282V	ENST00000357731	NM_173808.2	282	Ctc/Gtc																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195910	102195910	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	142	441	0	ENST00000263464.3:c.670G>C	p.Glu224Gln	p.E224Q	ENST00000263464	NM_001165.4	224	Gaa/Caa																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195999	102195999	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	151	412	0	ENST00000263464.3:c.759G>C	p.Gln253His	p.Q253H	ENST00000263464	NM_001165.4	253	caG/caC																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986971	36986971	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	611	392	0	ENST00000354822.5:c.718C>T	p.Gln240Ter	p.Q240*	ENST00000354822	NM_001079668.2	240	Cag/Tag																																																																														
AXL	0	MSKCC	GRCh37	19	41748800	41748800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	317	777	0	ENST00000301178.4:c.1325C>T	p.Ser442Leu	p.S442L	ENST00000301178	NM_021913.4	442	tCa/tTa																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185198273	185198273	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	514	545	0	ENST00000265026.3:c.2755C>G	p.Gln919Glu	p.Q919E	ENST00000265026	NM_004721.4	919	Cag/Gag																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120745	94120745	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	344	604	0	ENST00000369303.4:c.306G>C	p.Leu102Phe	p.L102F	ENST00000369303	NM_004440.3	102	ttG/ttC																																																																														
PMS2	0	MSKCC	GRCh37	7	6026633	6026633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	653	1196	2	ENST00000265849.7:c.1763C>T	p.Ser588Phe	p.S588F	ENST00000265849	NM_000535.5	588	tCt/tTt																																																																														
EZH2	0	MSKCC	GRCh37	7	148507497	148507497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	318	516	1	ENST00000320356.2:c.1957C>T	p.Gln653Ter	p.Q653*	ENST00000320356	NM_004456.4	653	Caa/Taa																																																																														
EZH2	0	MSKCC	GRCh37	7	148507506	148507506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0025175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	273	472	0	ENST00000320356.2:c.1948A>T	p.Ile650Phe	p.I650F	ENST00000320356	NM_004456.4	650	Att/Ttt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118348903	118349105	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGCAGTGCTGCAAGTAAGTGGGTGTTTCACTCTGAGATGTTGACCTCTCAACCATAAAGGTTGCTTATTTATCCCTAGTTTGTTGCAGAGATACATCAGGAAACTGAATGTGGTTGTAATTGAGTTGCAAGACTTGTTACAGTTAGATTTTGTGGTGTGGGCTGTGCTTAAATAAGAAATACTCTGGGGCCATGCTGTCATT	AAGCAGTGCTGCAAGTAAGTGGGTGTTTCACTCTGAGATGTTGACCTCTCAACCATAAAGGTTGCTTATTTATCCCTAGTTTGTTGCAGAGATACATCAGGAAACTGAATGTGGTTGTAATTGAGTTGCAAGACTTGTTACAGTTAGATTTTGTGGTGTGGGCTGTGCTTAAATAAGAAATACTCTGGGGCCATGCTGTCATT	-			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	35	209	0	ENST00000534358.1:c.3558_3569+191del		p.X1186_splice	ENST00000534358	NM_005933.3	1186																																																																															
HNF1A	0	MSKCC	GRCh37	12	121432085	121432085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	136	564	0	ENST00000257555.6:c.832C>T	p.Arg278Trp	p.R278W	ENST00000257555		278	Cgg/Tgg																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281905	49281905	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	172	658	0	ENST00000282018.3:c.952T>C	p.Ser318Pro	p.S318P	ENST00000282018	NM_020377.2	318	Tct/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	416	549	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
CDK12	0	MSKCC	GRCh37	17	37627640	37627640	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	33	486	0	ENST00000447079.4:c.1555G>C	p.Glu519Gln	p.E519Q	ENST00000447079	NM_015083.1	519	Gaa/Caa																																																																														
CIC	0	MSKCC	GRCh37	19	42788890	42789627	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCAGCGCGGCCTCCCGTGGCCTCGGCATGTTCGGTCAGTAGCGCCTGGGCCCTGGGACTGCAGGGGTCAAGGTGTCGGGGTGCTAAGTGCGGAGTAACGGTGGTGGGGGTATAGTAGGGGAGAGAACAGTAGAGGCAGAGTAAAGGGATGACGGGGAAAGTTACGGAGCTCGGCCGGGCCGAGTGGTTAGTGATGGCAGGTGGGAGTGTAGCGGAGTGGGGCGTATCTGGGGACAGCTGTGATGTTAAAGTGATGGGATGGCACAGGTCCGCTGTAATAGAAAGGTGAGGGGTGCAGAGTAACTGGCTCTGGAGCATGGGGTAGAATAGGAACAGCACGAGACCTGCTGGTCCTAGGGGAGGAGGCTTGGATTGGGTAGTGGGGCTAAGGACAGGGCTCAGGAAGCGAGTGAGGCACTGTTAGCTGAGATCAGAGTGACAGGCTGCAGTGTGTGGTGTAGTTTGCAGAGAGCGCGACACCTAAGAACCTGGAGGGTTGTGCACTGGGGAGGGGTTCAGGAGGGAGCAGGACCAAAGGACTGCCCTCCATTGTCTGCTGGGTCCCTTTTCCCCACCCCCCAGAAAAGAGGAGGCCTTGATGGGAAAGATCTTTGCAAAGAGAGGCACAGGTCTAAGTCCCTGGAGGCTTTTATATGGGGTTGGAGGGCCCAGCGGGTTTTCAGGGGTAAGGGACAGGGTCATCGTAGTCTTGAGTGCTCTTCAGTGCTGTCTTCGTGA	TCCAGCGCGGCCTCCCGTGGCCTCGGCATGTTCGGTCAGTAGCGCCTGGGCCCTGGGACTGCAGGGGTCAAGGTGTCGGGGTGCTAAGTGCGGAGTAACGGTGGTGGGGGTATAGTAGGGGAGAGAACAGTAGAGGCAGAGTAAAGGGATGACGGGGAAAGTTACGGAGCTCGGCCGGGCCGAGTGGTTAGTGATGGCAGGTGGGAGTGTAGCGGAGTGGGGCGTATCTGGGGACAGCTGTGATGTTAAAGTGATGGGATGGCACAGGTCCGCTGTAATAGAAAGGTGAGGGGTGCAGAGTAACTGGCTCTGGAGCATGGGGTAGAATAGGAACAGCACGAGACCTGCTGGTCCTAGGGGAGGAGGCTTGGATTGGGTAGTGGGGCTAAGGACAGGGCTCAGGAAGCGAGTGAGGCACTGTTAGCTGAGATCAGAGTGACAGGCTGCAGTGTGTGGTGTAGTTTGCAGAGAGCGCGACACCTAAGAACCTGGAGGGTTGTGCACTGGGGAGGGGTTCAGGAGGGAGCAGGACCAAAGGACTGCCCTCCATTGTCTGCTGGGTCCCTTTTCCCCACCCCCCAGAAAAGAGGAGGCCTTGATGGGAAAGATCTTTGCAAAGAGAGGCACAGGTCTAAGTCCCTGGAGGCTTTTATATGGGGTTGGAGGGCCCAGCGGGTTTTCAGGGGTAAGGGACAGGGTCATCGTAGTCTTGAGTGCTCTTCAGTGCTGTCTTCGTGA	-			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	72	427	0	ENST00000575354.2:c.37_67+707del		p.X13_splice	ENST00000575354	NM_015125.3	13																																																																															
ASXL2	0	MSKCC	GRCh37	2	25965173	25965173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	96	550	0	ENST00000435504.4:c.4033G>C	p.Val1345Leu	p.V1345L	ENST00000435504		1345	Gta/Cta																																																																														
XPO1	0	MSKCC	GRCh37	2	61724034	61724055	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGAGTAAATAGTGTTACAAA	TCAGAGTAAATAGTGTTACAAA	-			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	72	507	0	ENST00000401558.2:c.847_868del	p.Phe283GlnfsTer2	p.F283Qfs*2	ENST00000401558	NM_003400.3	283	TTTGTAACACTATTTACTCTGAca/ca																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467845	66467845	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	154	402	0	ENST00000273854.3:c.424G>C	p.Gly142Arg	p.G142R	ENST00000273854	NM_004439.5	142	Gga/Cga																																																																														
TAP2	0	MSKCC	GRCh37	6	32797286	32797286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	179	652	0	ENST00000374899.4:c.1823C>T	p.Ala608Val	p.A608V	ENST00000374899	NM_018833.2	608	gCt/gTt																																																																														
FYN	0	MSKCC	GRCh37	6	112015721	112015764	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGCAGCCACCTGTGGAAACCCAGGGAACAGGACATGTTACAC	CCTGCAGCCACCTGTGGAAACCCAGGGAACAGGACATGTTACAC	-			P-0025176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	77	478	0	ENST00000368678.4:c.1111-33_1121del		p.X371_splice	ENST00000368678		371																																																																															
SPEN	0	MSKCC	GRCh37	1	16260743	16260743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	44	367	0	ENST00000375759.3:c.8008G>C	p.Gly2670Arg	p.G2670R	ENST00000375759	NM_015001.2	2670	Ggc/Cgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577544	+	inframe_deletion	In_Frame_Del	DEL	GGTTCA	GGTTCA	-			P-0025177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	237	454	0	ENST00000269305.4:c.737_742del	p.Met246_Asn247del	p.M246_N247del	ENST00000269305	NM_001126112.2	246	aTGAACCgg/agg																																																																														
LYN	0	MSKCC	GRCh37	8	56879250	56879407	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCCCGCCTTCTTTTTTCTTCCTAGGTTACTATAACAACAGTACCAAGGTGGCTGTGAAAACCCTGAAGCCAGGAACTATGTCTGTGCAAGCCTTCCTGGAAGAAGCCAACCTCATGAAGACCCTGCAGCATGACAAGCTCGTGAGGCTCTACGCTGTG	GCCCGCCTTCTTTTTTCTTCCTAGGTTACTATAACAACAGTACCAAGGTGGCTGTGAAAACCCTGAAGCCAGGAACTATGTCTGTGCAAGCCTTCCTGGAAGAAGCCAACCTCATGAAGACCCTGCAGCATGACAAGCTCGTGAGGCTCTACGCTGTG	-			P-0025177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	77	344	0	ENST00000519728.1:c.791-23_925del		p.X264_splice	ENST00000519728	NM_002350.3	264																																																																															
CBL	0	MSKCC	GRCh37	11	119149250	119149250	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200341293		P-0024307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	9	463	0	ENST00000264033.4:c.1258C>T	p.Arg420Ter	p.R420*	ENST00000264033	NM_005188.3	420	Cga/Tga																																																																														
STK11	0	MSKCC	GRCh37	19	1206927	1206927	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024307-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	34	365	0	ENST00000326873.7:c.15C>A	p.Asp5Glu	p.D5E	ENST00000326873	NM_000455.4	5	gaC/gaA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			520	32	786	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610211	10610211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			828	79	727	0	ENST00000171111.5:c.499G>T	p.Val167Phe	p.V167F	ENST00000171111	NM_203500.1	167	Gtt/Ttt																																																																														
CBL	0	MSKCC	GRCh37	11	119170384	119170384	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	51	428	3	ENST00000264033.4:c.2614C>T	p.Gln872Ter	p.Q872*	ENST00000264033	NM_005188.3	872	Cag/Tag																																																																														
IRS1	0	MSKCC	GRCh37	2	227662760	227662760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			907	73	794	0	ENST00000305123.5:c.695G>T	p.Gly232Val	p.G232V	ENST00000305123	NM_005544.2	232	gGg/gTg																																																																														
BCL6	0	MSKCC	GRCh37	3	187447202	187447202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			740	67	697	0	ENST00000232014.4:c.991C>G	p.Pro331Ala	p.P331A	ENST00000232014	NM_001130845.1	331	Cca/Gca																																																																														
TERT	0	MSKCC	GRCh37	5	1294750	1294750	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	50	622	0	ENST00000310581.5:c.251T>A	p.Val84Glu	p.V84E	ENST00000310581	NM_198253.2	84	gTg/gAg																																																																														
ARAF	0	MSKCC	GRCh37	X	47428192	47428192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			855	81	696	1	ENST00000377045.4:c.1152G>T	p.Trp384Cys	p.W384C	ENST00000377045	NM_001654.4	384	tgG/tgT																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11121193	11121194	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0024421-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			730	68	649	2	ENST00000344626.4:c.2260_2261delinsA	p.Leu754ThrfsTer20	p.L754Tfs*20	ENST00000344626	NM_003072.3	754	CTc/Ac																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			210	323	365	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273216	18273216	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0024598-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			665	37	362	0	ENST00000222254.8:c.1011-2A>T		p.X337_splice	ENST00000222254	NM_005027.3	337																																																																															
TP53	0	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0024661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	279	577	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																																																														
NF1	0	MSKCC	GRCh37	17	29554622	29554622	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0024661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	162	350	0	ENST00000358273.4:c.2407C>T	p.Gln803Ter	p.Q803*	ENST00000358273	NM_001042492.2	803	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	69	671	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444975	49444975	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	26	554	0	ENST00000301067.7:c.2491T>A	p.Ser831Thr	p.S831T	ENST00000301067	NM_003482.3	831	Tca/Aca																																																																														
SDHA	0	MSKCC	GRCh37	5	236601	236602	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCC			P-0024776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	17	237	0	ENST00000264932.6:c.1321_1324dup	p.Ala442GlyfsTer40	p.A442Gfs*40	ENST00000264932	NM_004168.2	440	gag/gaGGCCg																																																																														
MDC1	0	MSKCC	GRCh37	6	30672321	30672321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	57	709	0	ENST00000376406.3:c.4639G>A	p.Val1547Ile	p.V1547I	ENST00000376406	NM_014641.2	1547	Gtc/Atc																																																																														
RB1	0	MSKCC	GRCh37	13	49039463	49039465	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0024897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	75	641	0	ENST00000267163.4:c.2450_2452del	p.Glu817del	p.E817del	ENST00000267163	NM_000321.2	816	tcAGAa/tca																																																																														
MSH3	0	MSKCC	GRCh37	5	80083442	80083442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	79	948	4	ENST00000265081.6:c.2494G>A	p.Asp832Asn	p.D832N	ENST00000265081	NM_002439.4	832	Gac/Aac																																																																														
RASA1	0	MSKCC	GRCh37	5	86668002	86668002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	38	404	0	ENST00000274376.6:c.1766G>A	p.Arg589His	p.R589H	ENST00000274376	NM_002890.2	589	cGc/cAc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99182108	99182108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	28	351	0	ENST00000074304.5:c.2173G>A	p.Glu725Lys	p.E725K	ENST00000074304	NM_001134224.1	725	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	122	671	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518388	8518388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	37	274	0	ENST00000356435.5:c.1003A>G	p.Thr335Ala	p.T335A	ENST00000356435		335	Aca/Gca																																																																														
MAX	0	MSKCC	GRCh37	14	65544630	65544630	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0024901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	84	559	0	ENST00000358664.4:c.295+1G>A		p.X99_splice	ENST00000358664	NM_002382.4	99																																																																															
PDPK1	0	MSKCC	GRCh37	16	2647272	2647272	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	122	592	1	ENST00000342085.4:c.1550A>T	p.His517Leu	p.H517L	ENST00000342085	NM_002613.4	517	cAc/cTc																																																																														
ERCC3	0	MSKCC	GRCh37	2	128036800	128036800	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	85	612	0	ENST00000285398.2:c.1679T>G	p.Val560Gly	p.V560G	ENST00000285398	NM_000122.1	560	gTc/gGc																																																																														
RAD21	0	MSKCC	GRCh37	8	117874180	117874180	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0024901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	84	366	2	ENST00000297338.2:c.275-1G>T		p.X92_splice	ENST00000297338	NM_006265.2	92																																																																															
VTCN1	0	MSKCC	GRCh37	1	117695938	117695938	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142973937		P-0024903-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	43	499	0	ENST00000369458.3:c.499C>T	p.Arg167Trp	p.R167W	ENST00000369458	NM_024626.3	167	Cgg/Tgg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	276	685	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
FLT3	0	MSKCC	GRCh37	13	28592705	28592705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	135	528	1	ENST00000241453.7:c.2440G>A	p.Ala814Thr	p.A814T	ENST00000241453	NM_004119.2	814	Gcc/Acc																																																																														
ALK	0	MSKCC	GRCh37	2	29443613	29443613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	158	855	0	ENST00000389048.3:c.3604G>A	p.Gly1202Arg	p.G1202R	ENST00000389048	NM_004304.4	1202	Gga/Aga																																																																														
HGF	0	MSKCC	GRCh37	7	81374320	81374320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	110	313	0	ENST00000222390.5:c.742G>A	p.Glu248Lys	p.E248K	ENST00000222390	NM_000601.4	248	Gaa/Aaa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141499	11141499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	335	718	0	ENST00000344626.4:c.3476G>A	p.Gly1159Glu	p.G1159E	ENST00000344626	NM_003072.3	1159	gGg/gAg																																																																														
ALK	0	MSKCC	GRCh37	2	29443631	29443631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	185	855	3	ENST00000389048.3:c.3586C>A	p.Leu1196Met	p.L1196M	ENST00000389048	NM_004304.4	1196	Ctg/Atg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41256919	41256919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	433	840	1	ENST00000357654.3:c.267del	p.Ile90PhefsTer29	p.I90Ffs*29	ENST00000357654	NM_007294.3	89	atC/at																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469139	25469139	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	439	883	1	ENST00000264709.3:c.1319G>A	p.Trp440Ter	p.W440*	ENST00000264709	NM_175629.2	440	tGg/tAg																																																																														
ERCC3	0	MSKCC	GRCh37	2	128038203	128038203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	174	612	0	ENST00000285398.2:c.1347G>C	p.Lys449Asn	p.K449N	ENST00000285398	NM_000122.1	449	aaG/aaC																																																																														
KIT	0	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	364	421	0	ENST00000288135.5:c.1669T>C	p.Trp557Arg	p.W557R	ENST00000288135	NM_000222.2	557	Tgg/Cgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	29	602	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	341	679	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	0	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	71	361	0	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	118	466	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
IGF2	0	MSKCC	GRCh37	11	2154797	2154797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	155	761	0	ENST00000434045.2:c.424A>T	p.Thr142Ser	p.T142S	ENST00000434045	NM_001127598.1	142	Acc/Tcc																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987106	36987106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	394	650	1	ENST00000354822.5:c.583C>T	p.Arg195Trp	p.R195W	ENST00000354822	NM_001079668.2	195	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175212	112175213	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	55	228	0	ENST00000257430.4:c.3923_3924del	p.Lys1308ArgfsTer6	p.K1308Rfs*6	ENST00000257430	NM_000038.5	1307	atAAaa/ataa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965617	93965617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	120	585	0	ENST00000369303.4:c.2311G>C	p.Val771Leu	p.V771L	ENST00000369303	NM_004440.3	771	Gtt/Ctt																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	9	255	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	12	347	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	21	419	1	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																														
PTPRT	0	MSKCC	GRCh37	20	40757438	40757438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	48	613	0	ENST00000373198.4:c.2860G>A	p.Asp954Asn	p.D954N	ENST00000373198	NM_133170.3	954	Gat/Aat																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55138570	55138570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	38	462	0	ENST00000257290.5:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000257290	NM_006206.4	416	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	275	609	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7978975	7978975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	210	563	0	ENST00000319144.4:c.1592C>T	p.Pro531Leu	p.P531L	ENST00000319144	NM_001139.2	531	cCg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0024930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	75	359	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106408	27106434	+	inframe_deletion	In_Frame_Del	DEL	CTGCTGCTCATCCTGGGCAAGCTGATC	CTGCTGCTCATCCTGGGCAAGCTGATC	-			P-0024930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	100	441	0	ENST00000324856.7:c.6026_6052del	p.Leu2009_Leu2017del	p.L2009_L2017del	ENST00000324856	NM_006015.4	2007	CTGCTGCTCATCCTGGGCAAGCTGATC/-																																																																														
CREBBP	0	MSKCC	GRCh37	16	3823913	3823913	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	65	546	0	ENST00000262367.5:c.2302C>T	p.Arg768Ter	p.R768*	ENST00000262367	NM_004380.2	768	Cga/Tga																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056594	26056594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	16	180	0	ENST00000343677.2:c.63G>T	p.Lys21Asn	p.K21N	ENST00000343677	NM_005319.3	21	aaG/aaT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	299	343	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	140	562	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SOS1	0	MSKCC	GRCh37	2	39278344	39278344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	68	706	0	ENST00000402219.2:c.805A>G	p.Met269Val	p.M269V	ENST00000402219	NM_005633.3	269	Atg/Gtg																																																																														
CARD11	0	MSKCC	GRCh37	7	2984079	2984079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	65	358	0	ENST00000396946.4:c.451G>A	p.Glu151Lys	p.E151K	ENST00000396946	NM_032415.4	151	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	378	587	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
AKT3	0	MSKCC	GRCh37	1	243800941	243800941	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	148	520	0	ENST00000263826.5:c.533T>A	p.Ile178Asn	p.I178N	ENST00000263826	NM_005465.4	178	aTt/aAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89720699	89720699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	11	79	0	ENST00000371953.3:c.850G>T	p.Glu284Ter	p.E284*	ENST00000371953	NM_000314.4	284	Gag/Tag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52662939	52662939	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	130	563	0	ENST00000394830.3:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000394830	NM_018313.4	472	Cga/Tga																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091838	29091838	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	54	258	1	ENST00000328354.6:c.1119G>T	p.Lys373Asn	p.K373N	ENST00000328354	NM_007194.3	373	aaG/aaT																																																																														
ERG	0	MSKCC	GRCh37	21	39755740	39755740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	49	438	2	ENST00000288319.7:c.1025C>T	p.Thr342Met	p.T342M	ENST00000288319	NM_182918.3	342	aCg/aTg																																																																														
VHL	0	MSKCC	GRCh37	3	10191545	10191545	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	133	467	0	ENST00000256474.2:c.538del	p.Ile180SerfsTer22	p.I180Sfs*22	ENST00000256474	NM_000551.3	180	Atc/tc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240705	53240705	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	64	298	0	ENST00000375401.3:c.1375A>T	p.Lys459Ter	p.K459*	ENST00000375401	NM_004187.3	459	Aaa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	24	456	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	52	531	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MTOR	0	MSKCC	GRCh37	1	11217230	11217230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	130	433	0	ENST00000361445.4:c.4448G>A	p.Cys1483Tyr	p.C1483Y	ENST00000361445	NM_004958.3	1483	tGc/tAc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37872557	37872557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	65	277	0	ENST00000269571.5:c.1517G>T	p.Gly506Val	p.G506V	ENST00000269571		506	gGc/gTc																																																																														
SOX9	0	MSKCC	GRCh37	17	70118864	70118864	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	84	263	0	ENST00000245479.2:c.436del	p.Leu146Ter	p.L146*	ENST00000245479	NM_000346.3	146	Ctg/tg																																																																														
APC	0	MSKCC	GRCh37	5	112174405	112174406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	17	202	0	ENST00000257430.4:c.3116dup	p.Arg1040LysfsTer8	p.R1040Kfs*8	ENST00000257430	NM_000038.5	1038	-/G																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	176	468	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	216	517	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	171	416	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	568	560	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	333	579	1	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
CSF1R	0	MSKCC	GRCh37	5	149460401	149460401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	244	535	2	ENST00000286301.3:c.236C>T	p.Thr79Met	p.T79M	ENST00000286301	NM_005211.3	79	aCg/aTg																																																																														
ALK	238	MSKCC	GRCh37	2	29451784	29451784	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772809305		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	320	638	5	ENST00000389048.3:c.2781del	p.Cys928AlafsTer11	p.C928Afs*11	ENST00000389048	NM_004304.4	927	ggG/gg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030640	48030640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1451840963		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	533	553	13	ENST00000234420.5:c.3261del	p.Phe1088SerfsTer2	p.F1088Sfs*2	ENST00000234420	NM_000179.2	1085	aCc/ac																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	216	432	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																																																														
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	205	552	3	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																																																														
RAD52	0	MSKCC	GRCh37	12	1039289	1039289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11571421		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	273	534	0	ENST00000358495.3:c.208C>T	p.Arg70Trp	p.R70W	ENST00000358495	NM_134424.2	70	Cgg/Tgg																																																																														
SOX9	6662	MSKCC	GRCh37	17	70118924	70118926	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	302	611	0	ENST00000245479.2:c.499_501del	p.Lys167del	p.K167del	ENST00000245479	NM_000346.3	166	AAG/-																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	305	711	1	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
ATRX	0	MSKCC	GRCh37	X	76939674	76939674	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	258	737	2	ENST00000373344.5:c.1074delA	p.Lys358AsnfsTer2	p.K358Nfs*2	ENST00000373344	NM_000489.3	358	aaA/aa																																																																														
PARK2	0	MSKCC	GRCh37	6	162206909	162206909	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150562946		P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	188	410	1	ENST00000366898.1:c.766C>T	p.Arg256Cys	p.R256C	ENST00000366898	NM_004562.2	256	Cgc/Tgc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781402	3781402	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	283	546	0	ENST00000262367.5:c.4963del	p.Leu1655CysfsTer89	p.L1655Cfs*89	ENST00000262367	NM_004380.2	1655	Ctg/tg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120459100	120459100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	292	587	0	ENST00000256646.2:c.6245C>T	p.Pro2082Leu	p.P2082L	ENST00000256646	NM_024408.3	2082	cCt/cTt																																																																														
ATM	0	MSKCC	GRCh37	11	108216512	108216512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	394	444	2	ENST00000278616.4:c.8461A>G	p.Met2821Val	p.M2821V	ENST00000278616	NM_000051.3	2821	Atg/Gtg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118307495	118307500	+	inframe_deletion	In_Frame_Del	DEL	TCGTCT	TCGTCT	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	187	477	0	ENST00000534358.1:c.279_284del	p.Ser97_Ser98del	p.S97_S98del	ENST00000534358	NM_005933.3	90	TCGTCT/-																																																																														
CHEK1	0	MSKCC	GRCh37	11	125507403	125507403	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	199	463	0	ENST00000428830.2:c.783del	p.Asp262IlefsTer42	p.D262Ifs*42	ENST00000428830	NM_001114121.2	260	Aaa/aa																																																																														
GLI1	2735	MSKCC	GRCh37	12	57864218	57864218	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	245	525	4	ENST00000228682.2:c.1700del	p.Pro567LeufsTer46	p.P567Lfs*46	ENST00000228682	NM_005269.2	565	ttC/tt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32971138	32971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	188	589	2	ENST00000380152.3:c.9605C>T	p.Pro3202Leu	p.P3202L	ENST00000380152		3202	cCg/cTg																																																																														
ERCC5	0	MSKCC	GRCh37	13	103504501	103504501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	118	343	0	ENST00000355739.4:c.122G>T	p.Gly41Val	p.G41V	ENST00000355739	NM_000123.3	41	gGa/gTa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103520471	103520471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	120	294	0	ENST00000355739.4:c.2542C>T	p.Arg848Trp	p.R848W	ENST00000355739	NM_000123.3	848	Cgg/Tgg																																																																														
SOCS1	0	MSKCC	GRCh37	16	11348864	11348864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	102	156	0	ENST00000332029.2:c.472C>G	p.Pro158Ala	p.P158A	ENST00000332029	NM_003745.1	158	Ccg/Gcg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346520	89346520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	236	590	0	ENST00000301030.4:c.6430C>T	p.Gln2144Ter	p.Q2144*	ENST00000301030	NM_001256183.1	2144	Cag/Tag																																																																														
CDK12	0	MSKCC	GRCh37	17	37682564	37682564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	160	289	0	ENST00000447079.4:c.3755C>T	p.Ala1252Val	p.A1252V	ENST00000447079	NM_015083.1	1252	gCa/gTa																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463271	25463271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	260	457	3	ENST00000264709.3:c.2222C>T	p.Ala741Val	p.A741V	ENST00000264709	NM_175629.2	741	gCg/gTg																																																																														
EP300	0	MSKCC	GRCh37	22	41554418	41554418	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	260	429	0	ENST00000263253.7:c.3504G>T	p.Leu1168Phe	p.L1168F	ENST00000263253	NM_001429.3	1168	ttG/ttT																																																																														
FGFR3	0	MSKCC	GRCh37	4	1795767	1795767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	122	302	1	ENST00000260795.2:c.106G>A	p.Ala36Thr	p.A36T	ENST00000260795		36	Gca/Aca																																																																														
FAT1	0	MSKCC	GRCh37	4	187542812	187542812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	194	510	0	ENST00000441802.2:c.4928G>A	p.Gly1643Asp	p.G1643D	ENST00000441802	NM_005245.3	1643	gGc/gAc																																																																														
NSD1	0	MSKCC	GRCh37	5	176666844	176666844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	216	470	0	ENST00000439151.2:c.4280G>T	p.Gly1427Val	p.G1427V	ENST00000439151	NM_022455.4	1427	gGg/gTg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29912275	29912275	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	330	694	0	ENST00000376809.5:c.896-2A>G		p.X299_splice	ENST00000376809	NM_002116.7	299																																																																															
KMT2C	0	MSKCC	GRCh37	7	151860048	151860048	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	169	341	0	ENST00000262189.6:c.10614T>A	p.Asn3538Lys	p.N3538K	ENST00000262189	NM_170606.2	3538	aaT/aaA																																																																														
SOX17	0	MSKCC	GRCh37	8	55372037	55372037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	269	506	1	ENST00000297316.4:c.727G>A	p.Gly243Arg	p.G243R	ENST00000297316	NM_022454.3	243	Ggg/Agg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70978659	70978659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	301	653	0	ENST00000276594.2:c.994C>T	p.Arg332Cys	p.R332C	ENST00000276594	NM_024504.3	332	Cgc/Tgc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98211521	98211521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	275	464	0	ENST00000331920.6:c.3634G>A	p.Gly1212Ser	p.G1212S	ENST00000331920	NM_000264.3	1212	Ggc/Agc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139409753	139409753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	298	595	2	ENST00000277541.6:c.2003C>T	p.Pro668Leu	p.P668L	ENST00000277541	NM_017617.3	668	cCg/cTg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44910997	44910997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	238	490	0	ENST00000377967.4:c.698A>G	p.Gln233Arg	p.Q233R	ENST00000377967	NM_021140.2	233	cAg/cGg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44966655	44966655	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0024973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	109	348	1	ENST00000377967.4:c.3879G>T	p.Lys1293Asn	p.K1293N	ENST00000377967	NM_021140.2	1293	aaG/aaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	85	425	0				ENST00000310581	NM_198253.2																																																																																
PAK7	0	MSKCC	GRCh37	20	9546847	9546847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	139	407	0	ENST00000353224.5:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000353224	NM_177990.2	392	tCg/tTg																																																																														
IL7R	0	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	121	461	0	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																																																														
PPP6C	0	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	119	438	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	185	636	2	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																																																														
HGF	0	MSKCC	GRCh37	7	81381466	81381466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	93	351	1	ENST00000222390.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000222390	NM_000601.4	199	Gaa/Aaa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858732	9858732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	113	394	0	ENST00000330684.3:c.2669C>T	p.Ser890Phe	p.S890F	ENST00000330684	NM_001134407.1	890	tCc/tTc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52663035	52663035	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	108	299	0	ENST00000394830.3:c.1318C>T	p.Gln440Ter	p.Q440*	ENST00000394830	NM_018313.4	440	Caa/Taa																																																																														
SESN1	0	MSKCC	GRCh37	6	109319805	109319805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	177	581	1	ENST00000436639.2:c.883C>T	p.Pro295Ser	p.P295S	ENST00000436639	NM_014454.2	295	Cct/Tct																																																																														
RRAGC	0	MSKCC	GRCh37	1	39311683	39311683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	227	764	0	ENST00000373001.3:c.976C>T	p.Leu326Phe	p.L326F	ENST00000373001	NM_022157.3	326	Ctt/Ttt																																																																														
LATS2	0	MSKCC	GRCh37	13	21549155	21549155	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	195	691	0	ENST00000382592.4:c.3121A>T	p.Thr1041Ser	p.T1041S	ENST00000382592	NM_014572.2	1041	Acc/Tcc																																																																														
TSHR	0	MSKCC	GRCh37	14	81528557	81528557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	128	421	0	ENST00000298171.2:c.236C>T	p.Ser79Phe	p.S79F	ENST00000298171	NM_000369.2	79	tCc/tTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214669	36214669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	130	509	0	ENST00000222270.7:c.3095C>T	p.Ser1032Phe	p.S1032F	ENST00000222270	NM_014727.1	1032	tCc/tTc																																																																														
TERT	0	MSKCC	GRCh37	5	1254497	1254497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	120	665	0	ENST00000310581.5:c.3281G>A	p.Gly1094Glu	p.G1094E	ENST00000310581	NM_198253.2	1094	gGg/gAg																																																																														
DUSP4	0	MSKCC	GRCh37	8	29194925	29194925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	191	645	1	ENST00000240100.2:c.803C>T	p.Ala268Val	p.A268V	ENST00000240100	NM_001394.6	268	gCc/gTc																																																																														
STAG2	0	MSKCC	GRCh37	X	123220521	123220521	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs146561651		P-0024995-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	159	343	0	ENST00000218089.9:c.3178A>G	p.Ile1060Val	p.I1060V	ENST00000218089	NM_001042749.1	1060	Att/Gtt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	754	702	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	409	579	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	338	645	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG																																																																														
BRD4	0	MSKCC	GRCh37	19	15374334	15374334	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201883209		P-0024997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	111	545	2	ENST00000263377.2:c.1238G>A	p.Arg413His	p.R413H	ENST00000263377	NM_058243.2	413	cGt/cAt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716328	52716328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	118	571	0	ENST00000322088.6:c.772C>G	p.Arg258Gly	p.R258G	ENST00000322088	NM_014225.5	258	Cgc/Ggc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	36	559	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879657	37879657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	38	444	0	ENST00000269571.5:c.2032C>T	p.Arg678Trp	p.R678W	ENST00000269571		678	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112179255	112179255	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	32	342	0	ENST00000257430.4:c.7964A>C	p.Glu2655Ala	p.E2655A	ENST00000257430	NM_000038.5	2655	gAg/gCg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965646	93965646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024999-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	30	417	0	ENST00000369303.4:c.2282C>T	p.Ala761Val	p.A761V	ENST00000369303	NM_004440.3	761	gCt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	243	504	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781465	3781465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	89	328	0	ENST00000262367.5:c.4900G>A	p.Val1634Met	p.V1634M	ENST00000262367	NM_004380.2	1634	Gtg/Atg																																																																														
RET	0	MSKCC	GRCh37	10	43608378	43608378	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	103	776	0	ENST00000355710.3:c.1726C>G	p.Gln576Glu	p.Q576E	ENST00000355710	NM_020975.4	576	Caa/Gaa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443645	49443645	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	172	564	0	ENST00000301067.7:c.3726G>C	p.Leu1242Phe	p.L1242F	ENST00000301067	NM_003482.3	1242	ttG/ttC																																																																														
MDM2	0	MSKCC	GRCh37	12	69210658	69210658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	147	485	1	ENST00000462284.1:c.241G>T	p.Val81Leu	p.V81L	ENST00000462284	NM_002392.5	81	Gta/Tta																																																																														
RAD51	0	MSKCC	GRCh37	15	40998481	40998481	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	145	587	0	ENST00000267868.3:c.332A>G	p.Lys111Arg	p.K111R	ENST00000267868	NM_002875.4	111	aAa/aGa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198270105	198270105	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1294	136	533	0	ENST00000335508.6:c.1331del	p.Phe444SerfsTer10	p.F444Sfs*10	ENST00000335508	NM_012433.2	444	tTc/tc																																																																														
AURKA	0	MSKCC	GRCh37	20	54945567	54945567	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	163	615	0	ENST00000312783.6:c.1003C>G	p.Gln335Glu	p.Q335E	ENST00000312783	NM_198436.1	335	Caa/Gaa																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186503760	186503760	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1122	120	491	0	ENST00000323963.5:c.441del	p.Lys147AsnfsTer21	p.K147Nfs*21	ENST00000323963		146	cAa/ca																																																																														
EPHA7	0	MSKCC	GRCh37	6	93979269	93979269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	256	498	1	ENST00000369303.4:c.1559C>T	p.Ala520Val	p.A520V	ENST00000369303	NM_004440.3	520	gCt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	110	670	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473732	67473732	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	176	595	0	ENST00000327367.4:c.812T>G	p.Leu271Arg	p.L271R	ENST00000327367	NM_005902.3	271	cTa/cGa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15984031	15984031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	86	373	0	ENST00000268712.3:c.3188G>A	p.Gly1063Asp	p.G1063D	ENST00000268712	NM_006311.3	1063	gGc/gAc																																																																														
RTEL1	0	MSKCC	GRCh37	20	62321760	62321774	+	inframe_deletion	In_Frame_Del	DEL	CCTGCATGTCCCCAG	CCTGCATGTCCCCAG	-			P-0025001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	47	565	0	ENST00000508582.2:c.2455_2469del	p.His819_Leu823del	p.H819_L823del	ENST00000508582		817	gaCCTGCATGTCCCCAGc/gac																																																																														
INHBA	0	MSKCC	GRCh37	7	41729447	41729447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	98	622	2	ENST00000242208.4:c.1082C>T	p.Thr361Met	p.T361M	ENST00000242208	NM_002192.2	361	aCg/aTg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185184621	185184621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	82	317	1	ENST00000265026.3:c.1513C>T	p.Gln505Ter	p.Q505*	ENST00000265026	NM_004721.4	505	Caa/Taa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938476	44938488	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGAAAACTGG	AGATGAAAACTGG	-			P-0025002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	84	250	0	ENST00000377967.4:c.3024_3036del	p.Asp1009IlefsTer35	p.D1009Ifs*35	ENST00000377967	NM_021140.2	1008	gcAGATGAAAACTGG/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0025092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	302	460	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248450	212248450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	91	278	1	ENST00000342788.4:c.3817C>T	p.Arg1273Trp	p.R1273W	ENST00000342788	NM_005235.2	1273	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	30	92	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																														
STK11	0	MSKCC	GRCh37	19	1221947	1221947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0025094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	157	643	0	ENST00000326873.7:c.863-1G>A		p.X288_splice	ENST00000326873	NM_000455.4	288																																																																															
ELF3	1999	MSKCC	GRCh37	1	201982989	201982990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0025094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	187	628	0	ENST00000359651.3:c.841dup	p.Asp281GlyfsTer20	p.D281Gfs*20	ENST00000359651		280	cgg/cGgg																																																																														
PGR	0	MSKCC	GRCh37	11	100998279	100998285	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCCC	GCCGCCC	-			P-0025094-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	34	170	0	ENST00000325455.5:c.1517_1523del	p.Gly506AlafsTer38	p.G506Afs*38	ENST00000325455	NM_001202474.3	506	gGGGCGGCc/gc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508932	106508932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	218	313	0	ENST00000359195.3:c.926C>T	p.Thr309Met	p.T309M	ENST00000359195	NM_002649.2	309	aCg/aTg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849866	156849866	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	395	540	0	ENST00000524377.1:c.2122A>G	p.Ser708Gly	p.S708G	ENST00000524377	NM_002529.3	708	Agc/Ggc																																																																														
LATS2	0	MSKCC	GRCh37	13	21565432	21565432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	497	653	0	ENST00000382592.4:c.454G>A	p.Val152Ile	p.V152I	ENST00000382592	NM_014572.2	152	Gtc/Atc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32912172	32912173	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-	rs80359395		P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	450	651	1	ENST00000380152.3:c.3680_3681del	p.Leu1227GlnfsTer5	p.L1227Qfs*5	ENST00000380152		1227	cTG/c																																																																														
CYLD	0	MSKCC	GRCh37	16	50813918	50813918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	310	584	0	ENST00000398568.2:c.1472C>G	p.Pro491Arg	p.P491R	ENST00000398568	NM_001042412.1	491	cCa/cGa																																																																														
CARM1	0	MSKCC	GRCh37	19	11024662	11024662	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	311	458	0	ENST00000327064.4:c.779G>C	p.Gly260Ala	p.G260A	ENST00000327064	NM_199141.1	260	gGc/gCc																																																																														
RYBP	0	MSKCC	GRCh37	3	72495713	72495713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	400	552	0	ENST00000477973.2:c.357C>T	p.Thr120Ile	p.T120I	ENST00000477973	NM_012234.5	120	aCc/aTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	80	444	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7578513	7578513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	19	922	0	ENST00000269305.4:c.417G>C	p.Lys139Asn	p.K139N	ENST00000269305	NM_001126112.2	139	aaG/aaC																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	133	463	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																																																														
SOX9	0	MSKCC	GRCh37	17	70119842	70119842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	227	742	0	ENST00000245479.2:c.844G>A	p.Val282Ile	p.V282I	ENST00000245479	NM_000346.3	282	Gtc/Atc																																																																														
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	100	539	2	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
ERCC5	0	MSKCC	GRCh37	13	103519027	103519027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	180	486	0	ENST00000355739.4:c.2365G>A	p.Glu789Lys	p.E789K	ENST00000355739	NM_000123.3	789	Gaa/Aaa																																																																														
MSH6	0	MSKCC	GRCh37	2	48033734	48033734	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	113	372	0	ENST00000234420.5:c.3947del	p.Gly1316AspfsTer11	p.G1316Dfs*11	ENST00000234420	NM_000179.2	1315	aaG/aa																																																																														
APC	0	MSKCC	GRCh37	5	112179224	112179224	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0025107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	119	378	0	ENST00000257430.4:c.7933T>A	p.Tyr2645Asn	p.Y2645N	ENST00000257430	NM_000038.5	2645	Tat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	115	574	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	192	593	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600446	10600446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	251	690	0	ENST00000171111.5:c.1409G>A	p.Arg470His	p.R470H	ENST00000171111	NM_203500.1	470	cGt/cAt																																																																														
RBM10	0	MSKCC	GRCh37	X	47041205	47041205	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1046	255	804	0	ENST00000329236.7:c.1400del	p.Pro467LeufsTer159	p.P467Lfs*159	ENST00000329236	NM_001204466.1	467	Cct/ct																																																																														
CIC	0	MSKCC	GRCh37	19	42799180	42799180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	222	659	0	ENST00000575354.2:c.4664G>T	p.Gly1555Val	p.G1555V	ENST00000575354	NM_015125.3	1555	gGg/gTg																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20159750	20159750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	161	497	1	ENST00000379607.5:c.9G>T	p.Lys3Asn	p.K3N	ENST00000379607	NM_001412.3	3	aaG/aaT																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974788	21974796	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCGAAGG	AGCCGAAGG	C			P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	52	189	0	ENST00000304494.5:c.31_39delinsG	p.Pro11GlyfsTer30	p.P11Gfs*30	ENST00000304494	NM_000077.4	11	CCTTCGGCT/G																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974788	21974796	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCGAAGG	AGCCGAAGG	C			P-0025112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	52	189	0	ENST00000304494.5:c.31_39delinsG	p.Pro11GlyfsTer30	p.P11Gfs*30	ENST00000304494	NM_000077.4	11	CCTTCGGCT/G																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435202	18435202	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007043-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			306	184	359	0	ENST00000266497.5:c.187T>A	p.Phe63Ile	p.F63I	ENST00000266497		63	Ttt/Att																																																																														
APC	0	MSKCC	GRCh37	5	112177782	112177798	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCACGAATTCTAAAA	GCCCACGAATTCTAAAA	-			P-0007043-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			88	169	332	0	ENST00000257430.4:c.6491_6507del	p.Gly2164AlafsTer10	p.G2164Afs*10	ENST00000257430	NM_000038.5	2164	gGCCCACGAATTCTAAAA/g																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060909	38060911	+	frameshift_variant	Frame_Shift_Ins	INS	TAT	TAT	ATGG			P-0007043-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			136	196	346	1	ENST00000250448.2:c.1078_1080delinsCCAT	p.Ile360ProfsTer2	p.I360Pfs*2	ENST00000250448	NM_004496.3	360	ATA/CCAT																																																																														
MTOR	0	MSKCC	GRCh37	1	11193150	11193150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022532-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			876	57	507	0	ENST00000361445.4:c.5351G>A	p.Arg1784His	p.R1784H	ENST00000361445	NM_004958.3	1784	cGc/cAc																																																																														
RB1	0	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0022532-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			25	394	371	2	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7573982	7573983	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0022532-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			52	486	730	1	ENST00000269305.4:c.1044_1045delinsTT	p.Leu348_Glu349delinsPheTer	p.L348_E349delinsF*	ENST00000269305	NM_001126112.2	348	ttGGaa/ttTTaa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022532-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	172	408	1				ENST00000310581	NM_198253.2																																																																																
CDKN1A	0	MSKCC	GRCh37	6	36651944	36651945	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022532-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1403	344	504	0	ENST00000244741.5:c.68dup	p.Val25SerfsTer11	p.V25Sfs*11	ENST00000244741	NM_000389.4	22	-/G																																																																														
MET	0	MSKCC	GRCh37	7	116409697	116409697	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0022532-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	45	162	0	ENST00000397752.3:c.2584-2A>G		p.X862_splice	ENST00000397752	NM_000245.2	862																																																																															
GATA3	0	MSKCC	GRCh37	10	8115898	8115899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	64	583	0	ENST00000346208.3:c.1245dup	p.Leu416AlafsTer91	p.L416Afs*91	ENST00000346208		415	atg/atGg																																																																														
BAP1	0	MSKCC	GRCh37	3	52438424	52438499	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCCGAAGCACCTAGAACCTGGTAGCCTTAGAAAGCTGGGCTGACCTAAGGGCAGAGTTGGTGTTCTGCACGTCAT	ATCCGAAGCACCTAGAACCTGGTAGCCTTAGAAAGCTGGGCTGACCTAAGGGCAGAGTTGGTGTTCTGCACGTCAT	-			P-0024948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	133	218	0	ENST00000460680.1:c.1220_1250+45del		p.X407_splice	ENST00000460680	NM_004656.3	407																																																																															
PTPRD	0	MSKCC	GRCh37	9	8486310	8486310	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	64	268	0	ENST00000356435.5:c.2507T>G	p.Met836Arg	p.M836R	ENST00000356435		836	aTg/aGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	63	569	2	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170774	11170774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	35	627	0	ENST00000344626.4:c.4822C>T	p.Arg1608Trp	p.R1608W	ENST00000344626	NM_003072.3	1608	Cgg/Tgg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43712836	43712836	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	87	738	2	ENST00000382044.4:c.4348G>T	p.Asp1450Tyr	p.D1450Y	ENST00000382044	NM_001141980.1	1450	Gac/Tac																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9916178	9916178	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	34	547	0	ENST00000330684.3:c.2111A>T	p.Tyr704Phe	p.Y704F	ENST00000330684	NM_001134407.1	704	tAc/tTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11135057	11135057	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	61	645	2	ENST00000344626.4:c.3024C>A	p.Tyr1008Ter	p.Y1008*	ENST00000344626	NM_003072.3	1008	taC/taA																																																																														
CIC	0	MSKCC	GRCh37	19	42795216	42795216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	155	634	2	ENST00000575354.2:c.2296G>T	p.Gly766Cys	p.G766C	ENST00000575354	NM_015125.3	766	Ggc/Tgc																																																																														
ATR	0	MSKCC	GRCh37	3	142215903	142215903	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	37	440	0	ENST00000350721.4:c.5690A>T	p.Lys1897Met	p.K1897M	ENST00000350721	NM_001184.3	1897	aAg/aTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435540	110435540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	158	346	3	ENST00000375856.3:c.2861C>T	p.Pro954Leu	p.P954L	ENST00000375856	NM_003749.2	954	cCg/cTg																																																																														
TSC2	0	MSKCC	GRCh37	16	2134386	2134393	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCCGAG	CTCCCGAG	-			P-0024953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	225	529	2	ENST00000219476.3:c.4165_4172del	p.Pro1389AlafsTer22	p.P1389Afs*22	ENST00000219476	NM_000548.3	1388	tCTCCCGAG/t																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	212	484	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	172	226	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	289	379	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56494873	56494873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	190	337	0	ENST00000267101.3:c.3230G>A	p.Arg1077Gln	p.R1077Q	ENST00000267101	NM_001982.3	1077	cGg/cAg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15989602	15989602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	94	242	0	ENST00000268712.3:c.3171C>G	p.Ile1057Met	p.I1057M	ENST00000268712	NM_006311.3	1057	atC/atG																																																																														
SPEN	0	MSKCC	GRCh37	1	16257557	16257557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	84	321	0	ENST00000375759.3:c.4822G>A	p.Glu1608Lys	p.E1608K	ENST00000375759	NM_015001.2	1608	Gag/Aag																																																																														
SETD2	0	MSKCC	GRCh37	3	47164717	47164717	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	66	290	0	ENST00000409792.3:c.1409C>G	p.Ser470Ter	p.S470*	ENST00000409792	NM_014159.6	470	tCa/tGa																																																																														
SPEN	0	MSKCC	GRCh37	1	16257779	16257779	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	102	321	0	ENST00000375759.3:c.5044G>C	p.Glu1682Gln	p.E1682Q	ENST00000375759	NM_015001.2	1682	Gaa/Caa																																																																														
DDR2	0	MSKCC	GRCh37	1	162746135	162746135	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	207	211	0	ENST00000367921.3:c.2258G>A	p.Trp753Ter	p.W753*	ENST00000367921	NM_006182.2	753	tGg/tAg																																																																														
RET	0	MSKCC	GRCh37	10	43609046	43609046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	252	304	0	ENST00000355710.3:c.1802G>T	p.Gly601Val	p.G601V	ENST00000355710	NM_020975.4	601	gGg/gTg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18443843	18443843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	57	363	0	ENST00000266497.5:c.816G>T	p.Trp272Cys	p.W272C	ENST00000266497		272	tgG/tgT																																																																														
TBX3	0	MSKCC	GRCh37	12	115109709	115109709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	147	420	0	ENST00000257566.3:c.2169C>A	p.Ser723Arg	p.S723R	ENST00000257566	NM_016569.3	723	agC/agA																																																																														
GPS2	0	MSKCC	GRCh37	17	7216899	7216899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	137	295	0	ENST00000380728.2:c.622C>G	p.Gln208Glu	p.Q208E	ENST00000380728		208	Cag/Gag																																																																														
NCOR1	0	MSKCC	GRCh37	17	16012099	16012099	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	180	334	0	ENST00000268712.3:c.2182+1G>T		p.X728_splice	ENST00000268712	NM_006311.3	728																																																																															
BRD4	0	MSKCC	GRCh37	19	15349643	15349643	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	123	328	0	ENST00000263377.2:c.3931C>T	p.Gln1311Ter	p.Q1311*	ENST00000263377	NM_058243.2	1311	Cag/Tag																																																																														
BRD4	0	MSKCC	GRCh37	19	15353711	15353711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	316	395	0	ENST00000263377.2:c.3169G>T	p.Gly1057Cys	p.G1057C	ENST00000263377	NM_058243.2	1057	Ggt/Tgt																																																																														
CIC	0	MSKCC	GRCh37	19	42791335	42791335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	130	366	0	ENST00000575354.2:c.395C>T	p.Ser132Phe	p.S132F	ENST00000575354	NM_015125.3	132	tCc/tTc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096264	178096264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	105	298	0	ENST00000397062.3:c.1067C>T	p.Ser356Leu	p.S356L	ENST00000397062	NM_006164.4	356	tCa/tTa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096291	178096291	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	111	335	0	ENST00000397062.3:c.1040C>G	p.Ser347Ter	p.S347*	ENST00000397062	NM_006164.4	347	tCa/tGa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790069	40790070	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	115	426	1	ENST00000373198.4:c.2661_2662delinsAT	p.Ile888Phe	p.I888F	ENST00000373198	NM_133170.3	887	gcCAtc/gcATtc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42845291	42845291	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	111	354	0	ENST00000398585.3:c.971C>A	p.Thr324Asn	p.T324N	ENST00000398585	NM_001135099.1	324	aCc/aAc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66280104	66280104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	172	303	1	ENST00000273854.3:c.1585G>T	p.Gly529Cys	p.G529C	ENST00000273854	NM_004439.5	529	Ggc/Tgc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143067138	143067138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	100	320	0	ENST00000262992.4:c.1575G>C	p.Trp525Cys	p.W525C	ENST00000262992	NM_001101669.1	525	tgG/tgC																																																																														
DROSHA	0	MSKCC	GRCh37	5	31422936	31422936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	254	551	4	ENST00000344624.3:c.3377G>T	p.Arg1126Met	p.R1126M	ENST00000344624		1126	aGg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112177449	112177449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	96	276	0	ENST00000257430.4:c.6158C>T	p.Pro2053Leu	p.P2053L	ENST00000257430	NM_000038.5	2053	cCt/cTt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149435856	149435856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	341	445	1	ENST00000286301.3:c.2368C>A	p.His790Asn	p.H790N	ENST00000286301	NM_005211.3	790	Cat/Aat																																																																														
CARD11	0	MSKCC	GRCh37	7	2977593	2977593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	286	384	0	ENST00000396946.4:c.1091G>T	p.Arg364Leu	p.R364L	ENST00000396946	NM_032415.4	364	cGc/cTc																																																																														
FANCC	0	MSKCC	GRCh37	9	97887388	97887388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	111	362	0	ENST00000289081.3:c.976C>G	p.Leu326Val	p.L326V	ENST00000289081	NM_000136.2	326	Ctg/Gtg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98229503	98229503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	118	376	0	ENST00000331920.6:c.2455C>T	p.Leu819Phe	p.L819F	ENST00000331920	NM_000264.3	819	Ctt/Ttt																																																																														
TSC1	0	MSKCC	GRCh37	9	135802689	135802689	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	52	248	0	ENST00000298552.3:c.109del	p.Arg37ValfsTer6	p.R37Vfs*6	ENST00000298552	NM_001162426.1	37	Cgt/gt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790069	40790069	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	115	420	0	ENST00000373198.4:c.2662A>T	p.Ile888Phe	p.I888F	ENST00000373198	NM_133170.3	888	Atc/Ttc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	176	593	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	208	437	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
GATA3	0	MSKCC	GRCh37	10	8100430	8100430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	52	490	0	ENST00000346208.3:c.404C>T	p.Pro135Leu	p.P135L	ENST00000346208		135	cCg/cTg																																																																														
TBX3	0	MSKCC	GRCh37	12	115117407	115117408	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	154	447	0	ENST00000257566.3:c.766dup	p.Arg256LysfsTer4	p.R256Kfs*4	ENST00000257566	NM_016569.3	256	aga/aAga																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348839	89348839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	179	705	0	ENST00000301030.4:c.4111G>C	p.Ala1371Pro	p.A1371P	ENST00000301030	NM_001256183.1	1371	Gcc/Ccc																																																																														
RNF43	0	MSKCC	GRCh37	17	56438274	56438275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	36	401	0	ENST00000407977.2:c.718_719insGA	p.Ile240ArgfsTer180	p.I240Rfs*180	ENST00000407977		240	atc/aGAtc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604748	48604748	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	114	400	0	ENST00000342988.3:c.1570T>C	p.Trp524Arg	p.W524R	ENST00000342988	NM_005359.5	524	Tgg/Cgg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41278094	41278094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	88	376	0	ENST00000349496.5:c.1970C>A	p.Ala657Asp	p.A657D	ENST00000349496	NM_001904.3	657	gCt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0024988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	158	364	1				ENST00000310581	NM_198253.2																																																																																
PTEN	0	MSKCC	GRCh37	10	89711892	89711892	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	216	447	0	ENST00000371953.3:c.510T>G	p.Ser170Arg	p.S170R	ENST00000371953	NM_000314.4	170	agT/agG																																																																														
MTOR	0	MSKCC	GRCh37	1	11174459	11174460	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0024988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	321	581	2	ENST00000361445.4:c.7215_7216delinsCT	p.Glu2405_Val2406delinsAspLeu	p.E2405_V2406delinsDL	ENST00000361445	NM_004958.3	2405	gaGGtg/gaCTtg																																																																														
JUN	0	MSKCC	GRCh37	1	59248007	59248007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024988-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	19	460	2	ENST00000371222.2:c.736G>A	p.Asp246Asn	p.D246N	ENST00000371222	NM_002228.3	246	Gac/Aac																																																																														
PBRM1	0	MSKCC	GRCh37	3	52637689	52637689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	28	580	1	ENST00000394830.3:c.2627G>A	p.Arg876His	p.R876H	ENST00000394830	NM_018313.4	876	cGt/cAt																																																																														
PARP1	0	MSKCC	GRCh37	1	226552797	226552797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	348	547	0	ENST00000366794.5:c.2564A>G	p.His855Arg	p.H855R	ENST00000366794	NM_001618.3	855	cAt/cGt																																																																														
IDH2	0	MSKCC	GRCh37	15	90631667	90631668	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0025019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	164	616	1	ENST00000330062.3:c.601_602delinsTT	p.Gly201Phe	p.G201F	ENST00000330062	NM_002168.2	201	GGc/TTc																																																																														
BLM	0	MSKCC	GRCh37	15	91292998	91292998	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	135	583	0	ENST00000355112.3:c.500A>G	p.Lys167Arg	p.K167R	ENST00000355112	NM_000057.2	167	aAa/aGa																																																																														
VHL	0	MSKCC	GRCh37	3	10183808	10183808	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025019-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	133	508	0	ENST00000256474.2:c.278del	p.Gly93AlafsTer66	p.G93Afs*66	ENST00000256474	NM_000551.3	93	Ggc/gc																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	358	447	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	34	306	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	377	425	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	377	524	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	19	568	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711883	89711884	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	77	445	0	ENST00000371953.3:c.502_503delAT	p.Ile168SerfsTer11	p.I168Sfs*11	ENST00000371953	NM_000314.4	167	acTAtt/actt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	111	196	6	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
JAK1	0	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	115	396	2	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																																																														
PTEN	0	MSKCC	GRCh37	10	89693002	89693003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	14	322	0	ENST00000371953.3:c.491dupA	p.Val166SerfsTer14	p.V166Sfs*14	ENST00000371953	NM_000314.4	162	-/A																																																																														
PTEN	0	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	45	345	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
RARA	0	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	92	497	6	ENST00000254066.5:c.1319delC	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463182	25463182	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	84	465	0	ENST00000264709.3:c.2311C>T	p.Arg771Ter	p.R771*	ENST00000264709	NM_175629.2	771	Cga/Tga																																																																														
MET	0	MSKCC	GRCh37	7	116436092	116436092	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45578433		P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	139	527	0	ENST00000397752.3:c.4087G>A	p.Ala1363Thr	p.A1363T	ENST00000397752	NM_000245.2	1363	Gct/Act																																																																														
NF1	0	MSKCC	GRCh37	17	29556378	29556379	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	343	489	0	ENST00000358273.4:c.2747dup	p.Asn916LysfsTer3	p.N916Kfs*3	ENST00000358273	NM_001042492.2	915	-/A																																																																														
MSH2	0	MSKCC	GRCh37	2	47698151	47698151	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	224	434	0	ENST00000233146.2:c.1709del	p.Tyr570LeufsTer20	p.Y570Lfs*20	ENST00000233146	NM_000251.2	570	tAt/tt																																																																														
AR	0	MSKCC	GRCh37	X	66765121	66765121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	112	365	3	ENST00000374690.3:c.133G>A	p.Ala45Thr	p.A45T	ENST00000374690	NM_000044.3	45	Gcg/Acg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0025024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	225	329	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8317878	8317878	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151311972		P-0025024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	100	321	0	ENST00000356435.5:c.5735C>T	p.Thr1912Met	p.T1912M	ENST00000356435		1912	aCg/aTg																																																																														
FGF3	0	MSKCC	GRCh37	11	69625456	69625456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	28	254	0	ENST00000334134.2:c.337G>T	p.Ala113Ser	p.A113S	ENST00000334134	NM_005247.2	113	Gcc/Tcc																																																																														
TP53	0	MSKCC	GRCh37	17	7579397	7579397	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	223	344	0	ENST00000269305.4:c.290del	p.Val97AlafsTer26	p.V97Afs*26	ENST00000269305	NM_001126112.2	97	gTc/gc																																																																														
MYC	0	MSKCC	GRCh37	8	128753187	128753187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	63	362	0	ENST00000377970.2:c.1348C>T	p.Arg450Trp	p.R450W	ENST00000377970	NM_002467.4	450	Cgg/Tgg																																																																														
FAT1	0	MSKCC	GRCh37	4	187531066	187531066	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	155	568	0	ENST00000441802.2:c.9957del	p.Thr3320LeufsTer2	p.T3320Lfs*2	ENST00000441802	NM_005245.3	3319	gcC/gc																																																																														
CDK8	0	MSKCC	GRCh37	13	26970430	26970443	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGAAGATATAAA	TGGGAAGATATAAA	-			P-0025110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	11	273	0	ENST00000381527.3:c.799_812del	p.Trp267LysfsTer4	p.W267Kfs*4	ENST00000381527	NM_001260.1	267	TGGGAAGATATAAAa/a																																																																														
AGO2	0	MSKCC	GRCh37	8	141551316	141551316	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	146	729	0	ENST00000220592.5:c.1981C>G	p.Pro661Ala	p.P661A	ENST00000220592	NM_012154.3	661	Ccc/Gcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	335	597	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	294	534	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857925	9857925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	190	479	1	ENST00000330684.3:c.3476G>A	p.Arg1159His	p.R1159H	ENST00000330684	NM_001134407.1	1159	cGc/cAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584497	48584497	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	142	315	1	ENST00000342988.3:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000342988	NM_005359.5	224	Cag/Tag																																																																														
FLT4	0	MSKCC	GRCh37	5	180030329	180030329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142322370		P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	518	596	1	ENST00000261937.6:c.3955C>T	p.Arg1319Trp	p.R1319W	ENST00000261937	NM_182925.4	1319	Cgg/Tgg																																																																														
SOX17	0	MSKCC	GRCh37	8	55371912	55371912	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	160	344	0	ENST00000297316.4:c.602G>C	p.Gly201Ala	p.G201A	ENST00000297316	NM_022454.3	201	gGc/gCc																																																																														
TSC1	0	MSKCC	GRCh37	9	135781074	135781077	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0025119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	119	531	0	ENST00000298552.3:c.1888_1891del	p.Lys630GlnfsTer22	p.K630Qfs*22	ENST00000298552	NM_001162426.1	630	AAAGca/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001196-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			298	206	923	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc																																																																														
KDR	0	MSKCC	GRCh37	4	55948775	55948775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001196-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			219	163	636	0	ENST00000263923.4:c.3690G>C	p.Lys1230Asn	p.K1230N	ENST00000263923	NM_002253.2	1230	aaG/aaC																																																																														
ERCC5	0	MSKCC	GRCh37	13	103524597	103524597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001196-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	51	320	1	ENST00000355739.4:c.2728C>T	p.His910Tyr	p.H910Y	ENST00000355739	NM_000123.3	910	Cat/Tat																																																																														
SOCS1	0	MSKCC	GRCh37	16	11349239	11349239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001196-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			107	43	206	0	ENST00000332029.2:c.97C>T	p.Pro33Ser	p.P33S	ENST00000332029	NM_003745.1	33	Ccc/Tcc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120296	94120319	+	protein_altering_variant	In_Frame_Del	DEL	GCACTGCAGTGCATCCTGGGGGCG	GCACTGCAGTGCATCCTGGGGGCG	TCC			P-0001196-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	44	329	3	ENST00000369303.4:c.732_755delinsGGA	p.Asn244_Ala252delinsLysGlu	p.N244_A252delinsKE	ENST00000369303	NM_004440.3	244	aaCGCCCCCAGGATGCACTGCAGTGCa/aaGGAa																																																																														
AGO2	0	MSKCC	GRCh37	8	141542172	141542172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001196-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			296	85	618	0	ENST00000220592.5:c.2551G>A	p.Asp851Asn	p.D851N	ENST00000220592	NM_012154.3	851	Gac/Aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	98	398	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	92	226	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577069	7577069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55819519		P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	41	724	0	ENST00000269305.4:c.869G>A	p.Arg290His	p.R290H	ENST00000269305	NM_001126112.2	290	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112175951	112175951	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	115	365	1	ENST00000257430.4:c.4660delG	p.Glu1554LysfsTer11	p.E1554Kfs*11	ENST00000257430	NM_000038.5	1554	Gaa/aa																																																																														
AKT1	0	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	129	1022	1	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	17	721	0	ENST00000269305.4:c.775G>C	p.Asp259His	p.D259H	ENST00000269305	NM_001126112.2	259	Gac/Cac																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	163	531	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520274	176520274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	53	436	0	ENST00000292408.4:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000292408	NM_213647.1	398	cGg/cAg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713609	30713609	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	103	366	0	ENST00000359013.4:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000359013	NM_001024847.2	337	Gag/Tag																																																																														
ATR	0	MSKCC	GRCh37	3	142217536	142217536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	179	514	2	ENST00000350721.4:c.5461G>A	p.Asp1821Asn	p.D1821N	ENST00000350721	NM_001184.3	1821	Gac/Aac																																																																														
CD274	0	MSKCC	GRCh37	9	5465595	5465595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148141792		P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	345	710	2	ENST00000381577.3:c.779G>A	p.Arg260His	p.R260H	ENST00000381577	NM_014143.3	260	cGt/cAt																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741837	17741837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199584989		P-0005742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	42	239	1	ENST00000250003.3:c.508G>A	p.Ala170Thr	p.A170T	ENST00000250003	NM_002478.4	170	Gcg/Acg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	129	515	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	45	819	0	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089562	27089562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	55	783	0	ENST00000324856.7:c.2518C>T	p.Gln840Ter	p.Q840*	ENST00000324856	NM_006015.4	840	Caa/Taa																																																																														
PAX5	0	MSKCC	GRCh37	9	37015133	37015133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024080-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			761	479	687	0	ENST00000358127.4:c.271G>A	p.Ala91Thr	p.A91T	ENST00000358127	NM_001280556.1	91	Gcc/Acc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060783	38060794	+	inframe_deletion	In_Frame_Del	DEL	GATGGAGAACGG	GATGGAGAACGG	-			P-0024080-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1420	206	975	0	ENST00000250448.2:c.1195_1206del	p.Pro399_Ile402del	p.P399_I402del	ENST00000250448	NM_004496.3	399	CCGTTCTCCATC/-																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061152	38061202	+	inframe_deletion	In_Frame_Del	DEL	CCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	CCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	-			P-0024080-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			263	344	201	0	ENST00000250448.2:c.787_837del	p.Gln263_Gly279del	p.Q263_G279del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGG/-																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	207	894	4	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141426	11141426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11537676		P-0024644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	193	835	0	ENST00000344626.4:c.3403C>T	p.Arg1135Trp	p.R1135W	ENST00000344626	NM_003072.3	1135	Cgg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	144	761	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
STK11	0	MSKCC	GRCh37	19	1219344	1219345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGT			P-0024644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	198	935	0	ENST00000326873.7:c.400_403dup	p.Gly135ValfsTer29	p.G135Vfs*29	ENST00000326873	NM_000455.4	132	-/GTGT																																																																														
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	201	365	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
INSR	0	MSKCC	GRCh37	19	7163179	7163180	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	263	955	1	ENST00000302850.5:c.1892dup	p.Ser632ValfsTer2	p.S632Vfs*2	ENST00000302850	NM_000208.2	631	gtg/gtTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105745	27105745	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	178	477	1	ENST00000324856.7:c.5356G>T	p.Glu1786Ter	p.E1786*	ENST00000324856	NM_006015.4	1786	Gag/Tag																																																																														
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	600	582	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120491740	120491740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	182	415	1	ENST00000256646.2:c.2489G>T	p.Cys830Phe	p.C830F	ENST00000256646	NM_024408.3	830	tGt/tTt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78857674	78857674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	371	934	0	ENST00000306801.3:c.1744G>A	p.Gly582Ser	p.G582S	ENST00000306801	NM_020761.2	582	Ggc/Agc																																																																														
STK11	0	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	671	824	0	ENST00000326873.7:c.836_837insA	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggAc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602290	10602290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	702	927	2	ENST00000171111.5:c.1288G>A	p.Gly430Ser	p.G430S	ENST00000171111	NM_203500.1	430	Ggc/Agc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	129	756	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	51	564	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	86	500	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	57	504	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112329	115112329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	50	484	0	ENST00000257566.3:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000257566	NM_016569.3	471	Cgc/Tgc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67358572	67358572	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	107	869	0	ENST00000327367.4:c.80A>T	p.Glu27Val	p.E27V	ENST00000327367	NM_005902.3	27	gAg/gTg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395745	45395745	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	95	646	0	ENST00000262160.6:c.389G>C	p.Arg130Pro	p.R130P	ENST00000262160	NM_005901.5	130	cGa/cCa																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851843	134851843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	46	1109	0	ENST00000398015.3:c.1249C>A	p.Pro417Thr	p.P417T	ENST00000398015	NM_004441.4	417	Ccc/Acc																																																																														
ATR	0	MSKCC	GRCh37	3	142277474	142277474	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	111	548	0	ENST00000350721.4:c.1877del	p.Asp626ValfsTer15	p.D626Vfs*15	ENST00000350721	NM_001184.3	626	gAt/gt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	215	574	31	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	111	452	13	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	62	321	16	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	230	792	54	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
PTPRS	0	MSKCC	GRCh37	19	5246048	5246048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	34	455	0	ENST00000357368.4:c.727G>A	p.Val243Met	p.V243M	ENST00000357368	NM_002850.3	243	Gtg/Atg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93967975	93967975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	214	654	32	ENST00000369303.4:c.1952G>A	p.Arg651His	p.R651H	ENST00000369303	NM_004440.3	651	cGt/cAt																																																																														
YES1	0	MSKCC	GRCh37	18	724579	724579	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024655-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	431	654	54	ENST00000314574.4:c.1477T>C	p.Cys493Arg	p.C493R	ENST00000314574	NM_005433.3	493	Tgc/Cgc																																																																														
APC	0	MSKCC	GRCh37	5	112178879	112178879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	209	405	1	ENST00000257430.4:c.7588C>T	p.Arg2530Trp	p.R2530W	ENST00000257430	NM_000038.5	2530	Cgg/Tgg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	299	781	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
AR	0	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	194	289	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532517	63532517	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	313	843	0	ENST00000307078.5:c.2062delC	p.Leu688Ter	p.L688*	ENST00000307078	NM_004655.3	688	Ctg/tg																																																																														
FLT4	0	MSKCC	GRCh37	5	180039609	180039609	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	256	816	0	ENST00000261937.6:c.3434G>A	p.Arg1145His	p.R1145H	ENST00000261937	NM_182925.4	1145	cGc/cAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	261	621	1	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
CSF3R	0	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	76	897	5	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
POLE	0	MSKCC	GRCh37	12	133244133	133244133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	284	717	1	ENST00000320574.5:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000320574	NM_006231.2	759	Cgt/Tgt																																																																														
MTOR	0	MSKCC	GRCh37	1	11206807	11206807	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202187935		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	323	757	1	ENST00000361445.4:c.4612C>T	p.Arg1538Trp	p.R1538W	ENST00000361445	NM_004958.3	1538	Cgg/Tgg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	213	421	1	ENST00000268489.5:c.2287dupG	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																																																														
LATS2	0	MSKCC	GRCh37	13	21549230	21549230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113238499		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	426	1083	4	ENST00000382592.4:c.3046G>A	p.Glu1016Lys	p.E1016K	ENST00000382592	NM_014572.2	1016	Gaa/Aaa																																																																														
MYD88	0	MSKCC	GRCh37	3	38182749	38182749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	66	706	0	ENST00000396334.3:c.902G>A	p.Arg301His	p.R301H	ENST00000396334	NM_002468.4	301	cGc/cAc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	354	774	3	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	135	965	2	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	236	646	5	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
KLF4	0	MSKCC	GRCh37	9	110249857	110249857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1038	96	759	3	ENST00000374672.4:c.818C>T	p.Thr273Met	p.T273M	ENST00000374672	NM_004235.4	273	aCg/aTg																																																																														
PPARG	0	MSKCC	GRCh37	3	12447396	12447396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	288	628	1	ENST00000287820.6:c.635G>A	p.Arg212Gln	p.R212Q	ENST00000287820	NM_015869.4	212	cGg/cAg																																																																														
MTOR	0	MSKCC	GRCh37	1	11217350	11217350	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	77	634	0	ENST00000361445.4:c.4330-2A>C		p.X1444_splice	ENST00000361445	NM_004958.3	1444																																																																															
SPEN	0	MSKCC	GRCh37	1	16262753	16262753	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	49	428	0	ENST00000375759.3:c.10018G>T	p.Ala3340Ser	p.A3340S	ENST00000375759	NM_015001.2	3340	Gct/Tct																																																																														
SPEN	0	MSKCC	GRCh37	1	16264114	16264114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	68	831	0	ENST00000375759.3:c.10483C>T	p.Pro3495Ser	p.P3495S	ENST00000375759	NM_015001.2	3495	Ccc/Tcc																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439771	51439771	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	161	350	0	ENST00000262662.1:c.336A>C	p.Lys112Asn	p.K112N	ENST00000262662		112	aaA/aaC																																																																														
NTRK1	0	MSKCC	GRCh37	1	156846235	156846235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201564883		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	269	762	1	ENST00000524377.1:c.1676G>A	p.Arg559His	p.R559H	ENST00000524377	NM_002529.3	559	cGt/cAt																																																																														
INPPL1	0	MSKCC	GRCh37	11	71949100	71949100	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	57	645	1	ENST00000298229.2:c.3567G>T	p.Gln1189His	p.Q1189H	ENST00000298229	NM_001567.3	1189	caG/caT																																																																														
ATM	0	MSKCC	GRCh37	11	108201111	108201111	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	65	456	0	ENST00000278616.4:c.7478A>G	p.Glu2493Gly	p.E2493G	ENST00000278616	NM_000051.3	2493	gAa/gGa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32953539	32953539	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	222	576	0	ENST00000380152.3:c.8842delA	p.Ile2948LeufsTer28	p.I2948Lfs*28	ENST00000380152		2947	gAa/ga																																																																														
MGA	0	MSKCC	GRCh37	15	42058412	42058412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	58	539	0	ENST00000219905.7:c.8132T>C	p.Val2711Ala	p.V2711A	ENST00000219905	NM_001164273.1	2711	gTg/gCg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43714075	43714075	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	338	794	0	ENST00000382044.4:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000382044	NM_001141980.1	1360	Cga/Tga																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472537	88472537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	162	724	0	ENST00000360948.2:c.2018A>G	p.Gln673Arg	p.Q673R	ENST00000360948	NM_001012338.2	673	cAg/cGg																																																																														
BLM	0	MSKCC	GRCh37	15	91295140	91295140	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	50	513	0	ENST00000355112.3:c.923T>G	p.Ile308Ser	p.I308S	ENST00000355112	NM_000057.2	308	aTt/aGt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789688	3789688	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	41	579	0	ENST00000262367.5:c.4171T>C	p.Tyr1391His	p.Y1391H	ENST00000262367	NM_004380.2	1391	Tat/Cat																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862737	9862737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	249	566	0	ENST00000330684.3:c.2566C>T	p.Arg856Trp	p.R856W	ENST00000330684	NM_001134407.1	856	Cgg/Tgg																																																																														
NUP93	0	MSKCC	GRCh37	16	56870517	56870517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	205	422	0	ENST00000308159.5:c.1787G>A	p.Gly596Glu	p.G596E	ENST00000308159	NM_014669.4	596	gGa/gAa																																																																														
TCF3	0	MSKCC	GRCh37	19	1625629	1625629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	334	1116	0	ENST00000344749.5:c.445T>C	p.Tyr149His	p.Y149H	ENST00000344749	NM_001136139.2	149	Tac/Cac																																																																														
DNMT1	0	MSKCC	GRCh37	19	10259560	10259560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	71	741	0	ENST00000340748.4:c.2672A>G	p.Lys891Arg	p.K891R	ENST00000340748		891	aAa/aGa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599936	10599936	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	83	894	0	ENST00000171111.5:c.1640T>C	p.Val547Ala	p.V547A	ENST00000171111	NM_203500.1	547	gTa/gCa																																																																														
BABAM1	0	MSKCC	GRCh37	19	17387338	17387338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	354	1021	0	ENST00000359435.4:c.604G>A	p.Val202Met	p.V202M	ENST00000359435	NM_001033549.1	202	Gtg/Atg																																																																														
CIC	0	MSKCC	GRCh37	19	42793223	42793223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	337	890	0	ENST00000575354.2:c.1115C>T	p.Ala372Val	p.A372V	ENST00000575354	NM_015125.3	372	gCg/gTg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45868418	45868418	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	86	765	0	ENST00000391945.4:c.361-2A>G		p.X121_splice	ENST00000391945	NM_000400.3	121																																																																															
PPP2R1A	0	MSKCC	GRCh37	19	52714643	52714643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	306	793	1	ENST00000322088.6:c.401G>A	p.Arg134Gln	p.R134Q	ENST00000322088	NM_014225.5	134	cGg/cAg																																																																														
ASXL2	0	MSKCC	GRCh37	2	26022394	26022394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	80	576	0	ENST00000435504.4:c.263C>T	p.Pro88Leu	p.P88L	ENST00000435504		88	cCg/cTg																																																																														
REL	0	MSKCC	GRCh37	2	61149666	61149666	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	16	178	0	ENST00000295025.8:c.1856T>C	p.Val619Ala	p.V619A	ENST00000295025	NM_002908.2	619	gTa/gCa																																																																														
CUL3	0	MSKCC	GRCh37	2	225339039	225339039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	93	582	0	ENST00000264414.4:c.2230C>T	p.Arg744Cys	p.R744C	ENST00000264414	NM_003590.4	744	Cgt/Tgt																																																																														
RTEL1	0	MSKCC	GRCh37	20	62326202	62326202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	307	912	3	ENST00000508582.2:c.3290C>T	p.Ser1097Phe	p.S1097F	ENST00000508582		1097	tCc/tTc																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45656975	45656975	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	117	939	0	ENST00000407780.3:c.181A>C	p.Thr61Pro	p.T61P	ENST00000407780	NM_001283052.1	61	Acc/Ccc																																																																														
EP300	0	MSKCC	GRCh37	22	41573329	41573329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	55	985	0	ENST00000263253.7:c.5614A>G	p.Thr1872Ala	p.T1872A	ENST00000263253	NM_001429.3	1872	Act/Gct																																																																														
RAF1	0	MSKCC	GRCh37	3	12645660	12645660	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	33	242	0	ENST00000251849.4:c.809T>C	p.Leu270Pro	p.L270P	ENST00000251849	NM_002880.3	270	cTg/cCg																																																																														
MST1R	0	MSKCC	GRCh37	3	49940409	49940409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	41	780	0	ENST00000296474.3:c.634A>G	p.Ser212Gly	p.S212G	ENST00000296474	NM_002447.2	212	Agc/Ggc																																																																														
BAP1	0	MSKCC	GRCh37	3	52440372	52440372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	110	665	3	ENST00000460680.1:c.680G>A	p.Arg227His	p.R227H	ENST00000460680	NM_004656.3	227	cGc/cAc																																																																														
PLK2	0	MSKCC	GRCh37	5	57751533	57751533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	238	427	0	ENST00000274289.3:c.1458G>A	p.Met486Ile	p.M486I	ENST00000274289	NM_006622.3	486	atG/atA																																																																														
APC	0	MSKCC	GRCh37	5	112174392	112174392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	51	234	0	ENST00000257430.4:c.3101A>G	p.Glu1034Gly	p.E1034G	ENST00000257430	NM_000038.5	1034	gAg/gGg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32189104	32189104	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	42	447	0	ENST00000375023.3:c.452-2A>G		p.X151_splice	ENST00000375023	NM_004557.3	151																																																																															
EPHA7	0	MSKCC	GRCh37	6	94120400	94120400	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	203	346	0	ENST00000369303.4:c.651T>A	p.Asp217Glu	p.D217E	ENST00000369303	NM_004440.3	217	gaT/gaA																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553714	106553714	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	71	493	0	ENST00000369096.4:c.1679A>G	p.Lys560Arg	p.K560R	ENST00000369096	NM_001198.3	560	aAg/aGg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099473	157099473	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	156	482	0	ENST00000346085.5:c.410A>T	p.Asn137Ile	p.N137I	ENST00000346085	NM_020732.3	137	aAc/aTc																																																																														
MET	0	MSKCC	GRCh37	7	116395451	116395451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	269	581	0	ENST00000397752.3:c.1744A>G	p.Thr582Ala	p.T582A	ENST00000397752	NM_000245.2	582	Acc/Gcc																																																																														
SMO	0	MSKCC	GRCh37	7	128849177	128849177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	95	832	0	ENST00000249373.3:c.1405T>C	p.Cys469Arg	p.C469R	ENST00000249373	NM_005631.4	469	Tgc/Cgc																																																																														
AGO2	0	MSKCC	GRCh37	8	141568626	141568626	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	82	826	0	ENST00000220592.5:c.836A>G	p.Tyr279Cys	p.Y279C	ENST00000220592	NM_012154.3	279	tAc/tGc																																																																														
JAK2	3717	MSKCC	GRCh37	9	5069097	5069099	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1371743120		P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	242	470	1	ENST00000381652.3:c.1407_1409del	p.Lys469del	p.K469del	ENST00000381652	NM_004972.3	468	AAG/-																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915900	127915900	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1110	90	635	0	ENST00000373547.4:c.581T>A	p.Leu194Gln	p.L194Q	ENST00000373547	NM_002721.4	194	cTg/cAg																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915910	127915910	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	79	637	0	ENST00000373547.4:c.571T>C	p.Phe191Leu	p.F191L	ENST00000373547	NM_002721.4	191	Ttt/Ctt																																																																														
ABL1	0	MSKCC	GRCh37	9	133729579	133729579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	78	716	0	ENST00000318560.5:c.208T>C	p.Tyr70His	p.Y70H	ENST00000318560	NM_005157.4	70	Tat/Cat																																																																														
ABL1	0	MSKCC	GRCh37	9	133730449	133730449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	53	497	0	ENST00000318560.5:c.515A>G	p.Tyr172Cys	p.Y172C	ENST00000318560	NM_005157.4	172	tAc/tGc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139417577	139417577	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	303	1177	0	ENST00000277541.6:c.467T>C	p.Leu156Pro	p.L156P	ENST00000277541	NM_017617.3	156	cTg/cCg																																																																														
STAG2	0	MSKCC	GRCh37	X	123195619	123195619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	78	72	0	ENST00000218089.9:c.1535-2A>G		p.X512_splice	ENST00000218089	NM_001042749.1	512																																																																															
STAG2	0	MSKCC	GRCh37	X	123195621	123195621	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	83	86	0	ENST00000218089.9:c.1535C>A	p.Ala512Glu	p.A512E	ENST00000218089	NM_001042749.1	512	gCa/gAa																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	104	578	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	26	400	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
EZH1	0	MSKCC	GRCh37	17	40864438	40864438	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139326526		P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	34	916	2	ENST00000428826.2:c.1270G>A	p.Val424Ile	p.V424I	ENST00000428826		424	Gta/Ata																																																																														
KMT2A	0	MSKCC	GRCh37	11	118390402	118390407	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCCA	GTGCCA	CT			P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	30	600	1	ENST00000534358.1:c.11216_11221delinsCT	p.Gly3739AlafsTer22	p.G3739Afs*22	ENST00000534358	NM_005933.3	3739	gGTGCCAag/gCTag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66270147	66270147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	20	431	1	ENST00000273854.3:c.1735G>T	p.Val579Leu	p.V579L	ENST00000273854	NM_004439.5	579	Gtg/Ttg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245462	153245462	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	62	680	0	ENST00000281708.4:c.1729T>G	p.Leu577Val	p.L577V	ENST00000281708	NM_033632.3	577	Tta/Gta																																																																														
APC	0	MSKCC	GRCh37	5	112175171	112175172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	20	239	0	ENST00000257430.4:c.3881dup	p.Glu1295GlyfsTer6	p.E1295Gfs*6	ENST00000257430	NM_000038.5	1294	cag/cAag																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468061	50468061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	10	416	0	ENST00000331340.3:c.1296C>G	p.His432Gln	p.H432Q	ENST00000331340	NM_006060.4	432	caC/caG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	364	573	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579534	7579535	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0024666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	439	623	0	ENST00000269305.4:c.152_153del	p.Glu51AlafsTer5	p.E51Afs*5	ENST00000269305	NM_001126112.2	51	gAA/g																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440543	49440543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	942	647	0	ENST00000301067.7:c.4267C>T	p.Arg1423Cys	p.R1423C	ENST00000301067	NM_003482.3	1423	Cgt/Tgt																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627780	14627781	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0024730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	123	609	0	ENST00000254322.2:c.289_290del	p.Asp97ProfsTer7	p.D97Pfs*7	ENST00000254322	NM_006145.1	97	GAc/c																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177457	56177457	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	125	398	0	ENST00000399503.3:c.2431del	p.Met811TrpfsTer11	p.M811Wfs*11	ENST00000399503	NM_005921.1	810	tcA/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	38	749	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	29	356	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1057	95	630	5	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
PLK2	0	MSKCC	GRCh37	5	57755670	57755670	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1427	107	945	2	ENST00000274289.3:c.117delC	p.Glu40ArgfsTer60	p.E40Rfs*60	ENST00000274289	NM_006622.3	39	ccC/cc																																																																														
MYC	0	MSKCC	GRCh37	8	128752960	128752960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	45	532	0	ENST00000377970.2:c.1121A>G	p.His374Arg	p.H374R	ENST00000377970	NM_002467.4	374	cAc/cGc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1260	74	644	5	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
FAT1	0	MSKCC	GRCh37	4	187627818	187627818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149283579		P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	69	817	1	ENST00000441802.2:c.3164C>T	p.Thr1055Met	p.T1055M	ENST00000441802	NM_005245.3	1055	aCg/aTg																																																																														
GATA2	0	MSKCC	GRCh37	3	128204992	128204992	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	82	745	0	ENST00000341105.2:c.449del	p.Gly150GlufsTer68	p.G150Efs*68	ENST00000341105	NM_032638.4	150	gGa/ga																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022647	31022647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	73	754	1	ENST00000375687.4:c.2132C>T	p.Thr711Ile	p.T711I	ENST00000375687	NM_015338.5	711	aCt/aTt																																																																														
TET2	0	MSKCC	GRCh37	4	106197294	106197294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	37	387	1	ENST00000380013.4:c.5627C>T	p.Ala1876Val	p.A1876V	ENST00000380013	NM_001127208.2	1876	gCa/gTa																																																																														
MUTYH	0	MSKCC	GRCh37	1	45800110	45800110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1192	72	823	2	ENST00000372115.3:c.110A>G	p.Gln37Arg	p.Q37R	ENST00000372115	NM_001048171.1	37	cAg/cGg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63845618	63845618	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	41	330	0	ENST00000279873.7:c.1359del	p.Glu454LysfsTer25	p.E454Kfs*25	ENST00000279873	NM_032199.2	453	Aaa/aa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692842	89692875	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAATGGCTAAGTGAAGATGACAATCATGTTGC	ACCAATGGCTAAGTGAAGATGACAATCATGTTGC	-			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	18	229	0	ENST00000371953.3:c.327_360del	p.Asp109GlufsTer14	p.D109Efs*14	ENST00000371953	NM_000314.4	109	gACCAATGGCTAAGTGAAGATGACAATCATGTTGCa/ga																																																																														
TSC2	0	MSKCC	GRCh37	16	2124388	2124388	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	99	955	0	ENST00000219476.3:c.2543C>T	p.Ser848Phe	p.S848F	ENST00000219476	NM_000548.3	848	tCc/tTc																																																																														
TSC2	0	MSKCC	GRCh37	16	2132501	2132501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1151	79	850	0	ENST00000219476.3:c.3879G>T	p.Trp1293Cys	p.W1293C	ENST00000219476	NM_000548.3	1293	tgG/tgT																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821629	72821629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	11	69	0	ENST00000268489.5:c.10546G>A	p.Gly3516Ser	p.G3516S	ENST00000268489	NM_006885.3	3516	Ggc/Agc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821673	72821673	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	36	288	0	ENST00000268489.5:c.10502T>C	p.Val3501Ala	p.V3501A	ENST00000268489	NM_006885.3	3501	gTg/gCg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78829348	78829348	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	49	597	0	ENST00000306801.3:c.1398+1G>A		p.X466_splice	ENST00000306801	NM_020761.2	466																																																																															
JAK3	0	MSKCC	GRCh37	19	17948745	17948745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1332	94	938	0	ENST00000458235.1:c.1697T>C	p.Met566Thr	p.M566T	ENST00000458235	NM_000215.3	566	aTg/aCg																																																																														
UPF1	0	MSKCC	GRCh37	19	18976261	18976261	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	73	747	0	ENST00000262803.5:c.3019+2T>C		p.X1007_splice	ENST00000262803	NM_002911.3	1007																																																																															
AXL	0	MSKCC	GRCh37	19	41745201	41745201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			943	77	696	0	ENST00000301178.4:c.1267C>A	p.Leu423Met	p.L423M	ENST00000301178	NM_021913.4	423	Ctg/Atg																																																																														
RRAS	0	MSKCC	GRCh37	19	50143253	50143253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	90	488	0	ENST00000246792.3:c.103G>A	p.Val35Met	p.V35M	ENST00000246792	NM_006270.3	35	Gtg/Atg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716281	52716281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	81	768	0	ENST00000322088.6:c.725C>T	p.Ala242Val	p.A242V	ENST00000322088	NM_014225.5	242	gCc/gTc																																																																														
SRC	0	MSKCC	GRCh37	20	36031209	36031209	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1205	74	883	1	ENST00000358208.4:c.1328C>G	p.Thr443Ser	p.T443S	ENST00000358208		443	aCc/aGc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42861488	42861488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	58	731	2	ENST00000398585.3:c.382C>A	p.Leu128Met	p.L128M	ENST00000398585	NM_001135099.1	128	Ctg/Atg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950138	38950138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	41	597	0	ENST00000357387.3:c.3812C>T	p.Thr1271Met	p.T1271M	ENST00000357387	NM_152756.3	1271	aCg/aTg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527739	157527739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	57	613	2	ENST00000346085.5:c.5464G>A	p.Gly1822Ser	p.G1822S	ENST00000346085	NM_020732.3	1822	Ggc/Agc																																																																														
ATRX	0	MSKCC	GRCh37	X	76937159	76937159	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	37	672	1	ENST00000373344.5:c.3589C>T	p.Gln1197Ter	p.Q1197*	ENST00000373344	NM_000489.3	1197	Caa/Taa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	191	479	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0024765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	177	535	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	295	637	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																																																														
MGA	0	MSKCC	GRCh37	15	42052632	42052632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	183	524	2	ENST00000219905.7:c.7303C>T	p.Arg2435Trp	p.R2435W	ENST00000219905	NM_001164273.1	2435	Cgg/Tgg																																																																														
ETV6	0	MSKCC	GRCh37	12	12037403	12037403	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	245	623	0	ENST00000396373.4:c.1034T>C	p.Val345Ala	p.V345A	ENST00000396373	NM_001987.4	345	gTc/gCc																																																																														
AR	0	MSKCC	GRCh37	X	66766444	66766444	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	25	327	0	ENST00000374690.3:c.1456C>A	p.Pro486Thr	p.P486T	ENST00000374690	NM_000044.3	486	Ccc/Acc																																																																														
DAXX	0	MSKCC	GRCh37	6	33286540	33286540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	156	518	0	ENST00000374542.5:c.2203G>A	p.Val735Met	p.V735M	ENST00000374542	NM_001141970.1	735	Gtg/Atg																																																																														
IRS1	0	MSKCC	GRCh37	2	227663151	227663151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	97	669	1	ENST00000305123.5:c.304G>A	p.Glu102Lys	p.E102K	ENST00000305123	NM_005544.2	102	Gag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187541334	187541334	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	112	445	0	ENST00000441802.2:c.6406del	p.Ser2136HisfsTer2	p.S2136Hfs*2	ENST00000441802	NM_005245.3	2136	Tca/ca																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324486	31324486	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	104	697	0	ENST00000412585.2:c.322T>G	p.Tyr108Asp	p.Y108D	ENST00000412585	NM_005514.6	108	Tac/Gac																																																																														
PREX2	0	MSKCC	GRCh37	8	68973000	68973000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	98	447	0	ENST00000288368.4:c.1325G>A	p.Gly442Glu	p.G442E	ENST00000288368	NM_024870.2	442	gGa/gAa																																																																														
KDM5C	0	MSKCC	GRCh37	X	53240726	53240726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	163	369	0	ENST00000375401.3:c.1354G>A	p.Gly452Ser	p.G452S	ENST00000375401	NM_004187.3	452	Ggt/Agt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	49	474	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	47	472	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	94	466	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	61	298	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	84	553	4	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																																																														
ATRX	0	MSKCC	GRCh37	X	76829788	76829788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	55	254	0	ENST00000373344.5:c.6253C>T	p.Arg2085Cys	p.R2085C	ENST00000373344	NM_000489.3	2085	Cgt/Tgt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832068	72832073	+	inframe_deletion	In_Frame_Del	DEL	GGCTCT	GGCTCT	-			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	71	433	0	ENST00000268489.5:c.4508_4513del	p.Gln1503_Ser1504del	p.Q1503_S1504del	ENST00000268489	NM_006885.3	1503	cAGAGCCca/cca																																																																														
RPTOR	0	MSKCC	GRCh37	17	78519586	78519586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	40	321	0	ENST00000306801.3:c.157G>T	p.Asp53Tyr	p.D53Y	ENST00000306801	NM_020761.2	53	Gat/Tat																																																																														
ATR	0	MSKCC	GRCh37	3	142281237	142281237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	41	431	0	ENST00000350721.4:c.1007G>T	p.Arg336Leu	p.R336L	ENST00000350721	NM_001184.3	336	cGg/cTg																																																																														
APC	0	MSKCC	GRCh37	5	112174223	112174223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	49	346	0	ENST00000257430.4:c.2932del	p.Gln978LysfsTer2	p.Q978Kfs*2	ENST00000257430	NM_000038.5	978	Caa/aa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50444317	50444317	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	51	278	0	ENST00000331340.3:c.247C>T	p.Arg83Ter	p.R83*	ENST00000331340	NM_006060.4	83	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	48	390	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	43	720	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
MAPK1	0	MSKCC	GRCh37	22	22221708	22221709	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCG			P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	23	118	4	ENST00000215832.6:c.20_22dupCGG	p.Ala7dup	p.A7dup	ENST00000215832	NM_002745.4	7	ggc/gCGGgc																																																																														
TP53	0	MSKCC	GRCh37	17	7579589	7579589	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	52	570	1	ENST00000269305.4:c.98C>T	p.Ser33Phe	p.S33F	ENST00000269305	NM_001126112.2	33	tCc/tTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8338947	8338947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	12	565	0	ENST00000356435.5:c.5354G>A	p.Arg1785Lys	p.R1785K	ENST00000356435		1785	aGg/aAg																																																																														
SPEN	0	MSKCC	GRCh37	1	16199583	16199583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	61	511	1	ENST00000375759.3:c.356C>T	p.Pro119Leu	p.P119L	ENST00000375759	NM_015001.2	119	cCa/cTa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88472664	88472664	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs56300182		P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	50	333	0	ENST00000360948.2:c.1891G>A	p.Ala631Thr	p.A631T	ENST00000360948	NM_001012338.2	631	Gcc/Acc																																																																														
TSC2	0	MSKCC	GRCh37	16	2108869	2108869	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	130	719	0	ENST00000219476.3:c.970T>C	p.Tyr324His	p.Y324H	ENST00000219476	NM_000548.3	324	Tac/Cac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72863699	72863699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	88	724	0	ENST00000268489.5:c.3508G>T	p.Ala1170Ser	p.A1170S	ENST00000268489	NM_006885.3	1170	Gct/Tct																																																																														
DNMT1	0	MSKCC	GRCh37	19	10265615	10265616	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	89	658	0	ENST00000340748.4:c.1561_1562delinsAC	p.Asp521Thr	p.D521T	ENST00000340748		521	GAc/ACc																																																																														
BRD4	0	MSKCC	GRCh37	19	15354020	15354020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	12	302	1	ENST00000263377.2:c.2860C>A	p.Pro954Thr	p.P954T	ENST00000263377	NM_058243.2	954	Ccc/Acc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306628	41306628	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	79	738	0	ENST00000373198.4:c.1031A>G	p.Asn344Ser	p.N344S	ENST00000373198	NM_133170.3	344	aAc/aGc																																																																														
PREX2	0	MSKCC	GRCh37	8	68965332	68965332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	16	481	0	ENST00000288368.4:c.944C>T	p.Ala315Val	p.A315V	ENST00000288368	NM_024870.2	315	gCt/gTt																																																																														
DNMT1	0	MSKCC	GRCh37	19	10265615	10265615	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	87	648	0	ENST00000340748.4:c.1562A>C	p.Asp521Ala	p.D521A	ENST00000340748		521	gAc/gCc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10265616	10265616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	89	658	0	ENST00000340748.4:c.1561G>A	p.Asp521Asn	p.D521N	ENST00000340748		521	Gac/Aac																																																																														
CDH1	0	MSKCC	GRCh37	16	68835794	68835794	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0024773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	141	523	1	ENST00000261769.5:c.385C>T	p.Gln129Ter	p.Q129*	ENST00000261769	NM_004360.3	129	Cag/Tag																																																																														
SH2B3	0	MSKCC	GRCh37	12	111884834	111884834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181079548		P-0024773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	27	413	2	ENST00000341259.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000341259	NM_005475.2	308	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	196	537	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
PALB2	0	MSKCC	GRCh37	16	23641295	23641295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	76	530	1	ENST00000261584.4:c.2180C>A	p.Ala727Asp	p.A727D	ENST00000261584	NM_024675.3	727	gCt/gAt																																																																														
TET2	0	MSKCC	GRCh37	4	106157809	106157809	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	40	270	0	ENST00000380013.4:c.2710C>A	p.Gln904Lys	p.Q904K	ENST00000380013	NM_001127208.2	904	Caa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112176390	112176390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	37	227	0	ENST00000257430.4:c.5099C>A	p.Ala1700Asp	p.A1700D	ENST00000257430	NM_000038.5	1700	gCt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112179129	112179129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	35	272	2	ENST00000257430.4:c.7838G>T	p.Arg2613Ile	p.R2613I	ENST00000257430	NM_000038.5	2613	aGa/aTa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266481	41266481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	190	400	0	ENST00000349496.5:c.278G>A	p.Arg93Lys	p.R93K	ENST00000349496	NM_001904.3	93	aGg/aAg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50455056	50455056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	42	442	0	ENST00000331340.3:c.603C>G	p.His201Gln	p.H201Q	ENST00000331340	NM_006060.4	201	caC/caG																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0024786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	389	708	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458612	120458612	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	158	577	0	ENST00000256646.2:c.6733del	p.His2245IlefsTer10	p.H2245Ifs*10	ENST00000256646	NM_024408.3	2245	Cat/at																																																																														
TAP2	0	MSKCC	GRCh37	6	32798142	32798142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	164	629	0	ENST00000374899.4:c.1537G>C	p.Ala513Pro	p.A513P	ENST00000374899	NM_018833.2	513	Gct/Cct																																																																														
RET	0	MSKCC	GRCh37	10	43601945	43601945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	30	648	1	ENST00000355710.3:c.989G>A	p.Arg330Gln	p.R330Q	ENST00000355710	NM_020975.4	330	cGg/cAg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680651	88680651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	72	487	1	ENST00000360948.2:c.606G>A	p.Met202Ile	p.M202I	ENST00000360948	NM_001012338.2	202	atG/atA																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610174	10610174	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	109	670	0	ENST00000171111.5:c.536T>G	p.Leu179Arg	p.L179R	ENST00000171111	NM_203500.1	179	cTg/cGg																																																																														
PREX2	0	MSKCC	GRCh37	8	69046481	69046481	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	40	621	0	ENST00000288368.4:c.3954T>G	p.Phe1318Leu	p.F1318L	ENST00000288368	NM_024870.2	1318	ttT/ttG																																																																														
SPEN	0	MSKCC	GRCh37	1	16260483	16260483	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	164	332	0	ENST00000375759.3:c.7749del	p.Glu2584LysfsTer7	p.E2584Kfs*7	ENST00000375759	NM_015001.2	2583	gAa/ga																																																																														
GATA3	0	MSKCC	GRCh37	10	8115920	8115920	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	410	363	0	ENST00000346208.3:c.1266del	p.Met422IlefsTer53	p.M422Ifs*53	ENST00000346208		422	atG/at																																																																														
MEN1	0	MSKCC	GRCh37	11	64572583	64572583	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	236	587	0	ENST00000337652.1:c.1288G>T	p.Glu430Ter	p.E430*	ENST00000337652	NM_130803.2	430	Gag/Tag																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12011115	12011115	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	242	423	0	ENST00000353533.5:c.522T>A	p.Cys174Ter	p.C174*	ENST00000353533	NM_003010.3	174	tgT/tgA																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20153856	20153857	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0024796-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	252	402	0	ENST00000379607.5:c.203dup	p.Val69GlyfsTer19	p.V69Gfs*19	ENST00000379607	NM_001412.3	68	aag/aaAg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	106	268	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	47	364	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	130	526	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247294	153247294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	65	294	1	ENST00000281708.4:c.1508C>T	p.Ala503Val	p.A503V	ENST00000281708	NM_033632.3	503	gCa/gTa																																																																														
PTEN	0	MSKCC	GRCh37	10	89720669	89720669	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	87	204	0	ENST00000371953.3:c.820T>G	p.Trp274Gly	p.W274G	ENST00000371953	NM_000314.4	274	Tgg/Ggg																																																																														
ATM	0	MSKCC	GRCh37	11	108150336	108150336	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0024803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	40	292	1	ENST00000278616.4:c.3402+1G>A		p.X1134_splice	ENST00000278616	NM_000051.3	1134																																																																															
ASXL1	0	MSKCC	GRCh37	20	31023598	31023598	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200702600		P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	186	612	2	ENST00000375687.4:c.3083C>T	p.Ser1028Leu	p.S1028L	ENST00000375687	NM_015338.5	1028	tCg/tTg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	326	687	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602767	10602767	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	1306	937	0	ENST00000171111.5:c.811G>C	p.Val271Leu	p.V271L	ENST00000171111	NM_203500.1	271	Gtg/Ctg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36208923	36208925	+	start_lost,inframe_deletion	Translation_Start_Site	DEL	GGC	GGC	-			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	10	36	0	ENST00000222270.7:c.14_16del	p.Ala5del	p.A5del	ENST00000222270	NM_014727.1	1	atGGCg/atg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432129	49432129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1440	340	803	0	ENST00000301067.7:c.9010G>A	p.Glu3004Lys	p.E3004K	ENST00000301067	NM_003482.3	3004	Gag/Aag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821594	72821626	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCC	GCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCC	-			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	24	137	0	ENST00000268489.5:c.10549_10581delGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGC	p.Gly3517_Gly3527del	p.G3517_G3527del	ENST00000268489	NM_006885.3	3517	GGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGC/-																																																																														
PLCG2	0	MSKCC	GRCh37	16	81972490	81972490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	293	555	0	ENST00000359376.3:c.3283G>T	p.Asp1095Tyr	p.D1095Y	ENST00000359376	NM_002661.3	1095	Gac/Tac																																																																														
DNMT1	0	MSKCC	GRCh37	19	10266621	10266621	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	49	538	0	ENST00000340748.4:c.1352G>T	p.Gly451Val	p.G451V	ENST00000340748		451	gGt/gTt																																																																														
ASXL2	0	MSKCC	GRCh37	2	26029204	26029204	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	26	389	0	ENST00000435504.4:c.146G>A	p.Gly49Glu	p.G49E	ENST00000435504		49	gGg/gAg																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114184	73114184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	135	529	0	ENST00000356692.5:c.820G>A	p.Gly274Arg	p.G274R	ENST00000356692		274	Gga/Aga																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185146582	185146582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	248	597	0	ENST00000265026.3:c.213C>A	p.Ser71Arg	p.S71R	ENST00000265026	NM_004721.4	71	agC/agA																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	144	810	3	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112174152	112174152	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	43	427	0	ENST00000257430.4:c.2861T>A	p.Leu954Ter	p.L954*	ENST00000257430	NM_000038.5	954	tTa/tAa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	186	840	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																																																														
TP53	0	MSKCC	GRCh37	17	7579390	7579393	+	frameshift_variant	Frame_Shift_Del	DEL	GGAA	GGAA	-			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	106	788	1	ENST00000269305.4:c.294_297delTTCC	p.Ser99ArgfsTer23	p.S99Rfs*23	ENST00000269305	NM_001126112.2	98	ccTTCC/cc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2216505	2216505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			997	100	867	1	ENST00000398665.3:c.2149G>A	p.Ala717Thr	p.A717T	ENST00000398665	NM_032482.2	717	Gct/Act																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138426007	138426007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	58	581	0	ENST00000289153.2:c.1524C>A	p.Phe508Leu	p.F508L	ENST00000289153	NM_006219.2	508	ttC/ttA																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185161347	185161347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	86	731	0	ENST00000265026.3:c.774C>G	p.Asp258Glu	p.D258E	ENST00000265026	NM_004721.4	258	gaC/gaG																																																																														
APC	0	MSKCC	GRCh37	5	112174179	112174179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	50	461	0	ENST00000257430.4:c.2888G>C	p.Ser963Thr	p.S963T	ENST00000257430	NM_000038.5	963	aGt/aCt																																																																														
APC	0	MSKCC	GRCh37	5	112175620	112175621	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAAACAGC			P-0024823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	74	349	0	ENST00000257430.4:c.4330_4337dup	p.Gln1447LysfsTer29	p.Q1447Kfs*29	ENST00000257430	NM_000038.5	1443	-/CAAACAGC																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	84	430	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	46	425	1	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	48	192	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	34	356	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PTCH1	0	MSKCC	GRCh37	9	98244444	98244444	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	61	499	0	ENST00000331920.6:c.626T>G	p.Leu209Arg	p.L209R	ENST00000331920	NM_000264.3	209	cTt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	122	476	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246481	105246481	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	92	539	0	ENST00000349310.3:c.119A>C	p.Glu40Ala	p.E40A	ENST00000349310	NM_001014432.1	40	gAg/gCg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575696	48575696	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	136	553	1	ENST00000342988.3:c.454+2T>A		p.X152_splice	ENST00000342988	NM_005359.5	152																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11123704	11123704	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	137	460	0	ENST00000344626.4:c.2354A>C	p.Lys785Thr	p.K785T	ENST00000344626	NM_003072.3	785	aAg/aCg																																																																														
GNAS	0	MSKCC	GRCh37	20	57485449	57485449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	56	275	0	ENST00000371085.3:c.1031A>C	p.Glu344Ala	p.E344A	ENST00000371085	NM_000516.4	344	gAg/gCg																																																																														
RAD50	0	MSKCC	GRCh37	5	131925501	131925501	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	75	304	0	ENST00000265335.6:c.1424T>G	p.Leu475Arg	p.L475R	ENST00000265335		475	cTt/cGt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509250	106509250	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	66	449	0	ENST00000359195.3:c.1244A>G	p.Glu415Gly	p.E415G	ENST00000359195	NM_002649.2	415	gAg/gGg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023348	27023348	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	45	228	1	ENST00000324856.7:c.454C>T	p.Gln152Ter	p.Q152*	ENST00000324856	NM_006015.4	152	Caa/Taa																																																																														
JUN	0	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0024827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	71	696	7	ENST00000371222.2:c.109_110delAG	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																														
JAK1	0	MSKCC	GRCh37	1	65305439	65305439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	37	448	0	ENST00000342505.4:c.2689G>A	p.Glu897Lys	p.E897K	ENST00000342505	NM_002227.2	897	Gaa/Aaa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94211960	94211960	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	50	579	0	ENST00000323929.3:c.485T>A	p.Ile162Lys	p.I162K	ENST00000323929	NM_005591.3	162	aTa/aAa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	75	415	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3801794	3801794	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	39	505	0	ENST00000262367.5:c.3712G>T	p.Glu1238Ter	p.E1238*	ENST00000262367	NM_004380.2	1238	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	149	533	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	33	301	0				ENST00000310581	NM_198253.2																																																																																
CDKN1A	0	MSKCC	GRCh37	6	36652034	36652035	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0024827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	119	654	0	ENST00000244741.5:c.158_159dup	p.Val54LeufsTer95	p.V54Lfs*95	ENST00000244741	NM_000389.4	52	-/TT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0024830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	133	438	0				ENST00000310581	NM_198253.2																																																																																
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0024830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	169	428	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105676	27105678	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0024830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	58	344	0	ENST00000324856.7:c.5299_5301del	p.Glu1767del	p.E1767del	ENST00000324856	NM_006015.4	1763	GAA/-																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074171	8074171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	71	304	0	ENST00000377482.5:c.488C>T	p.Ser163Phe	p.S163F	ENST00000377482	NM_018948.3	163	tCt/tTt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858001	9858001	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	77	501	0	ENST00000330684.3:c.3400C>A	p.Gln1134Lys	p.Q1134K	ENST00000330684	NM_001134407.1	1134	Cag/Aag																																																																														
INPP4A	0	MSKCC	GRCh37	2	99156135	99156135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	184	445	0	ENST00000074304.5:c.815C>T	p.Ala272Val	p.A272V	ENST00000074304	NM_001134224.1	272	gCc/gTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	132	527	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																																																														
KRAS	0	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	14	662	2	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata																																																																														
PREX2	0	MSKCC	GRCh37	8	68965476	68965476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	132	648	0	ENST00000288368.4:c.1088G>A	p.Arg363Gln	p.R363Q	ENST00000288368	NM_024870.2	363	cGg/cAg																																																																														
SHOC2	0	MSKCC	GRCh37	10	112764364	112764364	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0024859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	28	354	0	ENST00000369452.4:c.973A>C	p.Ser325Arg	p.S325R	ENST00000369452	NM_007373.3	325	Agt/Cgt																																																																														
RPS6KB2	0	MSKCC	GRCh37	11	67196476	67196476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	75	610	0	ENST00000312629.5:c.102G>C	p.Leu34Phe	p.L34F	ENST00000312629	NM_003952.2	34	ttG/ttC																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248369	212248369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	24	226	0	ENST00000342788.4:c.3898C>T	p.Pro1300Ser	p.P1300S	ENST00000342788	NM_005235.2	1300	Cct/Tct																																																																														
INPP4B	0	MSKCC	GRCh37	4	143044475	143044475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	16	453	0	ENST00000262992.4:c.1987G>C	p.Val663Leu	p.V663L	ENST00000262992	NM_001101669.1	663	Gta/Cta																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778107	27778107	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	55	691	0	ENST00000369163.2:c.256C>T	p.Gln86Ter	p.Q86*	ENST00000369163	NM_003536.2	86	Cag/Tag																																																																														
PTEN	0	MSKCC	GRCh37	10	89720876	89720876	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	107	370	0	ENST00000371953.3:c.1026+1G>T		p.X342_splice	ENST00000371953	NM_000314.4	342																																																																															
PTCH1	0	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	41	554	1	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	77	538	0	ENST00000269305.4:c.673-2A>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
MRE11A	0	MSKCC	GRCh37	11	94203704	94203704	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	33	374	0	ENST00000323929.3:c.950A>T	p.His317Leu	p.H317L	ENST00000323929	NM_005591.3	317	cAt/cTt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912264	32912264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	85	523	0	ENST00000380152.3:c.3772A>G	p.Ile1258Val	p.I1258V	ENST00000380152		1258	Ata/Gta																																																																														
TSC2	0	MSKCC	GRCh37	16	2121783	2121783	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	121	655	0	ENST00000219476.3:c.1947-2A>T		p.X649_splice	ENST00000219476	NM_000548.3	649																																																																															
TGFBR2	0	MSKCC	GRCh37	3	30715673	30715673	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	30	333	1	ENST00000359013.4:c.1406A>T	p.Gln469Leu	p.Q469L	ENST00000359013	NM_001024847.2	469	cAg/cTg																																																																														
PRKCI	0	MSKCC	GRCh37	3	169993053	169993053	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	98	478	0	ENST00000295797.4:c.683A>G	p.Asp228Gly	p.D228G	ENST00000295797	NM_002740.5	228	gAt/gGt																																																																														
FAT1	0	MSKCC	GRCh37	4	187557391	187557391	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	87	340	0	ENST00000441802.2:c.3973-2A>T		p.X1325_splice	ENST00000441802	NM_005245.3	1325																																																																															
LATS1	0	MSKCC	GRCh37	6	150001028	150001028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	32	393	0	ENST00000253339.5:c.2576C>T	p.Ser859Phe	p.S859F	ENST00000253339		859	tCt/tTt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098954	178098954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	252	298	0	ENST00000397062.3:c.91G>A	p.Gly31Arg	p.G31R	ENST00000397062	NM_006164.4	31	Gga/Aga																																																																														
STK11	0	MSKCC	GRCh37	19	1207168	1207168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	244	461	1	ENST00000326873.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000326873	NM_000455.4	86	Cga/Tga																																																																														
RICTOR	0	MSKCC	GRCh37	5	38945060	38945060	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	243	383	0	ENST00000357387.3:c.4744C>T	p.Gln1582Ter	p.Q1582*	ENST00000357387	NM_152756.3	1582	Caa/Taa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151836778	151836778	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	152	430	0	ENST00000262189.6:c.14442G>C	p.Glu4814Asp	p.E4814D	ENST00000262189	NM_170606.2	4814	gaG/gaC																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862756	9862756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	170	373	0	ENST00000330684.3:c.2547C>A	p.Phe849Leu	p.F849L	ENST00000330684	NM_001134407.1	849	ttC/ttA																																																																														
RAF1	0	MSKCC	GRCh37	3	12645681	12645681	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	224	237	0	ENST00000251849.4:c.788T>G	p.Val263Gly	p.V263G	ENST00000251849	NM_002880.3	263	gTc/gGc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151836825	151836825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	193	492	1	ENST00000262189.6:c.14395G>A	p.Glu4799Lys	p.E4799K	ENST00000262189	NM_170606.2	4799	Gag/Aag																																																																														
RBM10	0	MSKCC	GRCh37	X	47041674	47041674	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	251	243	0	ENST00000329236.7:c.1665del	p.Lys556ArgfsTer70	p.K556Rfs*70	ENST00000329236	NM_001204466.1	555	tcG/tc																																																																														
TP53	0	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	143	775	0	ENST00000269305.4:c.395A>C	p.Lys132Thr	p.K132T	ENST00000269305	NM_001126112.2	132	aAg/aCg																																																																														
DIS3	0	MSKCC	GRCh37	13	73347917	73347917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	8	373	1	ENST00000377767.4:c.1144C>T	p.Arg382Ter	p.R382*	ENST00000377767	NM_014953.3	382	Cga/Tga																																																																														
GATA3	0	MSKCC	GRCh37	10	8115903	8115904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	229	532	0	ENST00000346208.3:c.1251dupC	p.Thr418HisfsTer89	p.T418Hfs*89	ENST00000346208		417	acc/aCcc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56490377	56490377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	126	469	1	ENST00000267101.3:c.2146G>T	p.Gly716Cys	p.G716C	ENST00000267101	NM_001982.3	716	Ggc/Tgc																																																																														
GNA11	0	MSKCC	GRCh37	19	3121152	3121152	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	37	619	0	ENST00000078429.4:c.1055A>G	p.Asn352Ser	p.N352S	ENST00000078429	NM_002067.2	352	aAc/aGc																																																																														
EGFR	0	MSKCC	GRCh37	7	55219010	55219010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	25	481	0	ENST00000275493.2:c.583C>T	p.Pro195Ser	p.P195S	ENST00000275493	NM_005228.3	195	Ccc/Tcc																																																																														
TEK	0	MSKCC	GRCh37	9	27168535	27168535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	133	726	0	ENST00000380036.4:c.407G>A	p.Gly136Glu	p.G136E	ENST00000380036	NM_000459.3	136	gGa/gAa																																																																														
TEK	0	MSKCC	GRCh37	9	27168582	27168582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024889-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	129	731	0	ENST00000380036.4:c.454G>A	p.Asp152Asn	p.D152N	ENST00000380036	NM_000459.3	152	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	131	630	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249029	55249029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	8	507	1	ENST00000275493.2:c.2327G>T	p.Arg776Leu	p.R776L	ENST00000275493	NM_005228.3	776	cGc/cTc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	58	560	2	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112174484	112174484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	67	261	1	ENST00000257430.4:c.3193C>T	p.Gln1065Ter	p.Q1065*	ENST00000257430	NM_000038.5	1065	Caa/Taa																																																																														
SOX9	0	MSKCC	GRCh37	17	70119823	70119823	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	143	688	0	ENST00000245479.2:c.825del	p.Ile275MetfsTer4	p.I275Mfs*4	ENST00000245479	NM_000346.3	275	atC/at																																																																														
PTEN	0	MSKCC	GRCh37	10	89692988	89692988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	28	443	0	ENST00000371953.3:c.472G>C	p.Val158Leu	p.V158L	ENST00000371953	NM_000314.4	158	Gta/Cta																																																																														
MGA	0	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	61	526	1	ENST00000219905.7:c.7306C>T	p.Arg2436Cys	p.R2436C	ENST00000219905	NM_001164273.1	2436	Cgt/Tgt																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740695	58740696	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	37	504	0	ENST00000305921.3:c.1601_1602del	p.Phe534Ter	p.F534*	ENST00000305921	NM_003620.3	534	TTt/t																																																																														
INSR	0	MSKCC	GRCh37	19	7125428	7125428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	125	797	0	ENST00000302850.5:c.3124G>T	p.Ala1042Ser	p.A1042S	ENST00000302850	NM_000208.2	1042	Gcc/Tcc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10252867	10252867	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	116	539	0	ENST00000340748.4:c.3098C>T	p.Ala1033Val	p.A1033V	ENST00000340748		1033	gCg/gTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212495321	212495321	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0024892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	19	434	1	ENST00000342788.4:c.1947-2A>G		p.X649_splice	ENST00000342788	NM_005235.2	649																																																																															
ERCC4	0	MSKCC	GRCh37	16	14029318	14029318	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	66	280	0	ENST00000311895.7:c.1529del	p.Val510AlafsTer9	p.V510Afs*9	ENST00000311895	NM_005236.2	510	gTc/gc																																																																														
VHL	0	MSKCC	GRCh37	3	10183832	10183832	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	95	500	0	ENST00000256474.2:c.301del	p.Leu101CysfsTer58	p.L101Cfs*58	ENST00000256474	NM_000551.3	101	Ctg/tg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52610567	52610567	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	102	455	0	ENST00000394830.3:c.3606del	p.Cys1203ValfsTer41	p.C1203Vfs*41	ENST00000394830	NM_018313.4	1202	acA/ac																																																																														
STK19	0	MSKCC	GRCh37	6	31940407	31940408	+	missense_variant	Missense_Mutation	DNP	GC	GC	TA			P-0024894-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	99	537	2	ENST00000375331.2:c.440_441delinsTA	p.Arg147Leu	p.R147L	ENST00000375331	NM_004197.1	147	cGC/cTA																																																																														
PAK1	0	MSKCC	GRCh37	11	77103384	77103385	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	70	424	1	ENST00000356341.3:c.181_182delinsAA	p.Gly61Lys	p.G61K	ENST00000356341	NM_002576.4	61	GGa/AAa																																																																														
PAK1	0	MSKCC	GRCh37	11	77103457	77103457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	92	542	1	ENST00000356341.3:c.109G>A	p.Gly37Ser	p.G37S	ENST00000356341	NM_002576.4	37	Ggt/Agt																																																																														
TSC2	0	MSKCC	GRCh37	16	2121912	2121912	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201769220		P-0024919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	364	986	3	ENST00000219476.3:c.2074G>A	p.Val692Ile	p.V692I	ENST00000219476	NM_000548.3	692	Gtc/Atc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5211679	5211679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	62	929	1	ENST00000357368.4:c.5156G>A	p.Ser1719Asn	p.S1719N	ENST00000357368	NM_002850.3	1719	aGc/aAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440430	49440431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	177	456	0	ENST00000301067.7:c.4379dupC	p.Leu1461ThrfsTer30	p.L1461Tfs*30	ENST00000301067	NM_003482.3	1460	cca/ccCa																																																																														
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0024993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	280	318	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
CCND1	0	MSKCC	GRCh37	11	69465988	69465988	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	253	397	0	ENST00000227507.2:c.826G>T	p.Glu276Ter	p.E276*	ENST00000227507	NM_053056.2	276	Gag/Tag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15296160	15296160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	172	420	0	ENST00000263388.2:c.2204G>A	p.Arg735Gln	p.R735Q	ENST00000263388	NM_000435.2	735	cGa/cAa																																																																														
SPEN	0	MSKCC	GRCh37	1	16257144	16257144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	233	347	1	ENST00000375759.3:c.4409G>A	p.Arg1470Gln	p.R1470Q	ENST00000375759	NM_015001.2	1470	cGa/cAa																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798793	45798793	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	206	438	0	ENST00000372115.3:c.396C>G	p.Ile132Met	p.I132M	ENST00000372115	NM_001048171.1	132	atC/atG																																																																														
CCND1	0	MSKCC	GRCh37	11	69457888	69457888	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs148113872		P-0024993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	124	357	0	ENST00000227507.2:c.288G>C	p.Lys96Asn	p.K96N	ENST00000227507	NM_053056.2	96	aaG/aaC																																																																														
MDC1	0	MSKCC	GRCh37	6	30679969	30679969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	122	294	0	ENST00000376406.3:c.1750G>T	p.Gly584Cys	p.G584C	ENST00000376406	NM_014641.2	584	Ggc/Tgc																																																																														
SMO	0	MSKCC	GRCh37	7	128852125	128852125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	198	390	0	ENST00000249373.3:c.2197G>T	p.Val733Phe	p.V733F	ENST00000249373	NM_005631.4	733	Gtc/Ttc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399470	139399471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	478	331	0	ENST00000277541.6:c.4672_4673insA	p.Gly1558GlufsTer52	p.G1558Efs*52	ENST00000277541	NM_017617.3	1558	ggg/gAgg																																																																														
PTEN	0	MSKCC	GRCh37	10	89711927	89711928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	41	556	0	ENST00000371953.3:c.548dup	p.Asn184GlufsTer6	p.N184Efs*6	ENST00000371953	NM_000314.4	182	tta/ttAa																																																																														
BLM	0	MSKCC	GRCh37	15	91354442	91354442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	25	408	0	ENST00000355112.3:c.3882C>G	p.Asp1294Glu	p.D1294E	ENST00000355112	NM_000057.2	1294	gaC/gaG																																																																														
JAK2	0	MSKCC	GRCh37	9	5022061	5022061	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	34	696	0	ENST00000381652.3:c.76del	p.Ser26LeufsTer7	p.S26Lfs*7	ENST00000381652	NM_004972.3	25	aTt/at																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	92	500	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	0	MSKCC	GRCh37	20	57484780	57484780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	67	457	0	ENST00000371085.3:c.760A>G	p.Asn254Asp	p.N254D	ENST00000371085	NM_000516.4	254	Aac/Gac																																																																														
BCOR	0	MSKCC	GRCh37	X	39933576	39933579	+	frameshift_variant	Frame_Shift_Del	DEL	GGGT	GGGT	-			P-0025008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	94	432	0	ENST00000378444.4:c.1020_1023del	p.Pro341GlufsTer36	p.P341Efs*36	ENST00000378444	NM_001123385.1	340	tcACCC/tc																																																																														
AR	0	MSKCC	GRCh37	X	66931310	66931310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	53	445	0	ENST00000374690.3:c.1952G>T	p.Ser651Ile	p.S651I	ENST00000374690	NM_000044.3	651	aGc/aTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0025009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	19	605	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0025009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	18	483	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0025009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	18	483	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0025009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	18	483	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
RBM10	0	MSKCC	GRCh37	X	47039290	47039290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	11	375	1	ENST00000329236.7:c.682C>T	p.Arg228Cys	p.R228C	ENST00000329236	NM_001204466.1	228	Cgc/Tgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187541359	187541359	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	38	450	0	ENST00000441802.2:c.6381del	p.Gln2128LysfsTer10	p.Q2128Kfs*10	ENST00000441802	NM_005245.3	2127	ttT/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	256	536	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	187	462	1	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696404	47696404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	250	479	0	ENST00000347630.2:c.419A>G	p.Asp140Gly	p.D140G	ENST00000347630	NM_001007230.1	140	gAt/gGt																																																																														
GLI1	0	MSKCC	GRCh37	12	57861143	57861143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	342	563	0	ENST00000228682.2:c.940C>T	p.Arg314Cys	p.R314C	ENST00000228682	NM_005269.2	314	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0025044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	380	624	0	ENST00000269305.4:c.993+2T>G		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
HIST1H3A	0	MSKCC	GRCh37	6	26021117	26021117	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0025044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	223	371	0	ENST00000357647.3:c.400G>C	p.Glu134Gln	p.E134Q	ENST00000357647	NM_003529.2	134	Gag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	228	730	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0025046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	100	425	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0025046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	237	778	2	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT																																																																														
BRD4	0	MSKCC	GRCh37	19	15355121	15355121	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	35	736	0	ENST00000263377.2:c.2502G>C	p.Glu834Asp	p.E834D	ENST00000263377	NM_058243.2	834	gaG/gaC																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106514	27106514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	68	397	0	ENST00000324856.7:c.6125G>A	p.Ser2042Asn	p.S2042N	ENST00000324856	NM_006015.4	2042	aGc/aAc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	85	255	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
NTRK1	0	MSKCC	GRCh37	1	156838408	156838408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	104	366	0	ENST00000524377.1:c.686T>C	p.Leu229Pro	p.L229P	ENST00000524377	NM_002529.3	229	cTc/cCc																																																																														
NUF2	0	MSKCC	GRCh37	1	163307849	163307849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	92	296	0	ENST00000271452.3:c.475C>G	p.His159Asp	p.H159D	ENST00000271452	NM_145697.2	159	Cac/Gac																																																																														
NUF2	0	MSKCC	GRCh37	1	163313577	163313577	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	30	331	0	ENST00000271452.3:c.724A>G	p.Thr242Ala	p.T242A	ENST00000271452	NM_145697.2	242	Aca/Gca																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	27	311	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																																																														
TET1	0	MSKCC	GRCh37	10	70450787	70450787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	36	305	0	ENST00000373644.4:c.5627G>A	p.Ser1876Asn	p.S1876N	ENST00000373644	NM_030625.2	1876	aGc/aAc																																																																														
CCND1	0	MSKCC	GRCh37	11	69457951	69457951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	14	277	0	ENST00000227507.2:c.355del	p.Leu119Ter	p.L119*	ENST00000227507	NM_053056.2	117	atC/at																																																																														
INPPL1	0	MSKCC	GRCh37	11	71939522	71939522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	30	420	0	ENST00000298229.2:c.377C>A	p.Pro126Gln	p.P126Q	ENST00000298229	NM_001567.3	126	cCg/cAg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94179003	94179003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	29	350	0	ENST00000323929.3:c.1840G>A	p.Ala614Thr	p.A614T	ENST00000323929	NM_005591.3	614	Gca/Aca																																																																														
PGR	0	MSKCC	GRCh37	11	100912676	100912676	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	28	276	0	ENST00000325455.5:c.2646T>A	p.Asp882Glu	p.D882E	ENST00000325455	NM_001202474.3	882	gaT/gaA																																																																														
ATM	0	MSKCC	GRCh37	11	108114816	108114817	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	149	485	1	ENST00000278616.4:c.640dupT	p.Ser214PhefsTer40	p.S214Ffs*40	ENST00000278616	NM_000051.3	211	-/T																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344369	118344369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	23	216	0	ENST00000534358.1:c.2495C>T	p.Pro832Leu	p.P832L	ENST00000534358	NM_005933.3	832	cCt/cTt																																																																														
RAD52	0	MSKCC	GRCh37	12	1036341	1036341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	43	374	1	ENST00000358495.3:c.437C>T	p.Ala146Val	p.A146V	ENST00000358495	NM_134424.2	146	gCg/gTg																																																																														
RECQL	0	MSKCC	GRCh37	12	21627877	21627877	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	157	548	0	ENST00000421138.2:c.1253A>G	p.Tyr418Cys	p.Y418C	ENST00000421138		418	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	151	505	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GLI1	0	MSKCC	GRCh37	12	57859434	57859434	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	23	391	0	ENST00000228682.2:c.579A>C	p.Glu193Asp	p.E193D	ENST00000228682	NM_005269.2	193	gaA/gaC																																																																														
BRCA2	0	MSKCC	GRCh37	13	32953514	32953514	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	138	331	0	ENST00000380152.3:c.8815A>G	p.Lys2939Glu	p.K2939E	ENST00000380152		2939	Aag/Gag																																																																														
RB1	0	MSKCC	GRCh37	13	48878069	48878069	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	20	160	0	ENST00000267163.4:c.25del	p.Thr9ArgfsTer56	p.T9Rfs*56	ENST00000267163	NM_000321.2	7	cgA/cg																																																																														
ERCC5	0	MSKCC	GRCh37	13	103524683	103524683	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	36	310	0	ENST00000355739.4:c.2814A>C	p.Lys938Asn	p.K938N	ENST00000355739	NM_000123.3	938	aaA/aaC																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43701932	43701933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	24	209	0	ENST00000382044.4:c.5312dup	p.Leu1771PhefsTer24	p.L1771Ffs*24	ENST00000382044	NM_001141980.1	1771	ttg/ttTg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88483932	88483932	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	133	425	1	ENST00000360948.2:c.1638G>T	p.Glu546Asp	p.E546D	ENST00000360948	NM_001012338.2	546	gaG/gaT																																																																														
IDH2	0	MSKCC	GRCh37	15	90631704	90631704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	59	354	0	ENST00000330062.3:c.565G>A	p.Ala189Thr	p.A189T	ENST00000330062	NM_002168.2	189	Gcc/Acc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778882	3778882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	30	282	0	ENST00000262367.5:c.6166G>A	p.Val2056Met	p.V2056M	ENST00000262367	NM_004380.2	2056	Gtg/Atg																																																																														
CTCF	0	MSKCC	GRCh37	16	67650720	67650720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	147	424	0	ENST00000264010.4:c.1025G>A	p.Arg342His	p.R342H	ENST00000264010	NM_006565.3	342	cGt/cAt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830807	72830807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	26	386	0	ENST00000268489.5:c.5774del	p.Gly1925ValfsTer72	p.G1925Vfs*72	ENST00000268489	NM_006885.3	1925	gGt/gt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15942828	15942828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	125	363	0	ENST00000268712.3:c.6874G>A	p.Val2292Ile	p.V2292I	ENST00000268712	NM_006311.3	2292	Gta/Ata																																																																														
NCOR1	0	MSKCC	GRCh37	17	15952280	15952280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	38	359	0	ENST00000268712.3:c.6415A>G	p.Arg2139Gly	p.R2139G	ENST00000268712	NM_006311.3	2139	Agg/Ggg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983295	15983295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	129	357	0	ENST00000268712.3:c.3484C>T	p.Arg1162Trp	p.R1162W	ENST00000268712	NM_006311.3	1162	Cgg/Tgg																																																																														
FLCN	0	MSKCC	GRCh37	17	17119725	17119725	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	90	288	0	ENST00000285071.4:c.1269del	p.His423GlnfsTer45	p.H423Qfs*45	ENST00000285071	NM_144997.5	423	caC/ca																																																																														
CDK12	0	MSKCC	GRCh37	17	37687228	37687228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	31	334	0	ENST00000447079.4:c.4132G>T	p.Gly1378Cys	p.G1378C	ENST00000447079	NM_015083.1	1378	Ggc/Tgc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	153	534	9	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	74	226	0	ENST00000307078.5:c.1214_1215delAG	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																																																														
SOX9	0	MSKCC	GRCh37	17	70119978	70119978	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	11	140	0	ENST00000245479.2:c.983del	p.Pro328ArgfsTer55	p.P328Rfs*55	ENST00000245479	NM_000346.3	327	aCc/ac																																																																														
RPTOR	0	MSKCC	GRCh37	17	78923342	78923342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	81	255	0	ENST00000306801.3:c.3365C>T	p.Thr1122Met	p.T1122M	ENST00000306801	NM_020761.2	1122	aCg/aTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5210583	5210583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	26	363	1	ENST00000357368.4:c.5384C>T	p.Pro1795Leu	p.P1795L	ENST00000357368	NM_002850.3	1795	cCg/cTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276729	15276729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	134	416	1	ENST00000263388.2:c.5536G>A	p.Ala1846Thr	p.A1846T	ENST00000263388	NM_000435.2	1846	Gct/Act																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15290893	15290893	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	52	442	0	ENST00000263388.2:c.3317A>G	p.Tyr1106Cys	p.Y1106C	ENST00000263388	NM_000435.2	1106	tAc/tGc																																																																														
BRD4	0	MSKCC	GRCh37	19	15374311	15374311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	29	389	0	ENST00000263377.2:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000263377	NM_058243.2	421	Gac/Aac																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273026	18273026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	120	376	0	ENST00000222254.8:c.921delC	p.Lys308ArgfsTer33	p.K308Rfs*33	ENST00000222254	NM_005027.3	306	Ccc/cc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19258545	19258545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	25	401	0	ENST00000162023.5:c.355G>A	p.Glu119Lys	p.E119K	ENST00000162023		119	Gaa/Aaa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224734	36224735	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	129	477	1	ENST00000222270.7:c.7120_7121insA	p.Pro2374HisfsTer6	p.P2374Hfs*6	ENST00000222270	NM_014727.1	2374	cca/cAca																																																																														
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	62	201	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																																																														
POLD1	0	MSKCC	GRCh37	19	50912080	50912080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	149	406	0	ENST00000440232.2:c.1814C>T	p.Ser605Leu	p.S605L	ENST00000440232	NM_002691.3	605	tCg/tTg																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	107	375	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
ERCC3	0	MSKCC	GRCh37	2	128030506	128030506	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	57	418	0	ENST00000285398.2:c.1762del	p.Glu588LysfsTer23	p.E588Kfs*23	ENST00000285398	NM_000122.1	588	Gaa/aa																																																																														
ACVR1	0	MSKCC	GRCh37	2	158617542	158617543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	22	351	0	ENST00000263640.3:c.1113dup	p.Asn372GlufsTer18	p.N372Efs*18	ENST00000263640	NM_001105.4	371	-/G																																																																														
INHA	0	MSKCC	GRCh37	2	220437288	220437288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	124	420	0	ENST00000243786.2:c.197del	p.Gly66AlafsTer61	p.G66Afs*61	ENST00000243786	NM_002191.3	64	ctG/ct																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022358	31022358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	16	197	0	ENST00000375687.4:c.1843G>A	p.Ala615Thr	p.A615T	ENST00000375687	NM_015338.5	615	Gca/Aca																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385153	41385153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	134	409	0	ENST00000373198.4:c.808C>T	p.Arg270Cys	p.R270C	ENST00000373198	NM_133170.3	270	Cgc/Tgc																																																																														
RAF1	0	MSKCC	GRCh37	3	12633207	12633207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	122	349	0	ENST00000251849.4:c.1193G>T	p.Arg398Leu	p.R398L	ENST00000251849	NM_002880.3	398	cGc/cTc																																																																														
GATA2	0	MSKCC	GRCh37	3	128200691	128200691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	103	342	2	ENST00000341105.2:c.1114G>A	p.Ala372Thr	p.A372T	ENST00000341105	NM_032638.4	372	Gcc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	111	304	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	88	309	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
BCL6	0	MSKCC	GRCh37	3	187451336	187451336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	86	253	0	ENST00000232014.4:c.146T>C	p.Val49Ala	p.V49A	ENST00000232014	NM_001130845.1	49	gTc/gCc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1920318	1920318	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	41	427	5	ENST00000382891.5:c.1382del	p.Leu461TrpfsTer12	p.L461Wfs*12	ENST00000382891	NM_133335.3	460	Ttt/tt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1955117	1955117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	60	436	1	ENST00000382891.5:c.2204G>A	p.Cys735Tyr	p.C735Y	ENST00000382891	NM_133335.3	735	tGt/tAt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152018	55152018	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79948560		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	128	338	0	ENST00000257290.5:c.2450G>A	p.Arg817His	p.R817H	ENST00000257290	NM_006206.4	817	cGt/cAt																																																																														
FAT1	0	MSKCC	GRCh37	4	187554836	187554836	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	20	232	0	ENST00000441802.2:c.4323+2T>C		p.X1441_splice	ENST00000441802	NM_005245.3	1441																																																																															
DROSHA	0	MSKCC	GRCh37	5	31449396	31449396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	44	353	0	ENST00000344624.3:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000344624		938	cGg/cAg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177039	56177039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	34	294	0	ENST00000399503.3:c.2309C>T	p.Ala770Val	p.A770V	ENST00000399503	NM_005921.1	770	gCt/gTt																																																																														
PLK2	0	MSKCC	GRCh37	5	57750808	57750808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	48	346	0	ENST00000274289.3:c.1796G>T	p.Arg599Leu	p.R599L	ENST00000274289	NM_006622.3	599	cGg/cTg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	83	458	10	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149515217	149515217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	83	391	0	ENST00000261799.4:c.265A>G	p.Asn89Asp	p.N89D	ENST00000261799	NM_002609.3	89	Aac/Gac																																																																														
FLT4	0	MSKCC	GRCh37	5	180046289	180046289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	23	294	0	ENST00000261937.6:c.2725G>A	p.Val909Met	p.V909M	ENST00000261937	NM_182925.4	909	Gtg/Atg																																																																														
FLT4	0	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	81	388	4	ENST00000261937.6:c.1267delC	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	150	234	0	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
STK19	0	MSKCC	GRCh37	6	31946776	31946776	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	30	405	0	ENST00000375331.2:c.663+1G>T		p.X221_splice	ENST00000375331	NM_004197.1	221																																																																															
TAP2	6891	MSKCC	GRCh37	6	32805788	32805788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	206	387	0	ENST00000374899.4:c.223del	p.Leu75Ter	p.L75*	ENST00000374899	NM_018833.2	75	Ctg/tg																																																																														
SESN1	0	MSKCC	GRCh37	6	109309771	109309771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	145	475	0	ENST00000436639.2:c.1544G>A	p.Trp515Ter	p.W515*	ENST00000436639	NM_014454.2	515	tGg/tAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151835931	151835931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	111	378	0	ENST00000262189.6:c.14593G>T	p.Gly4865Ter	p.G4865*	ENST00000262189	NM_170606.2	4865	Gga/Tga																																																																														
KMT2C	0	MSKCC	GRCh37	7	151891639	151891639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	21	248	0	ENST00000262189.6:c.4393A>G	p.Thr1465Ala	p.T1465A	ENST00000262189	NM_170606.2	1465	Act/Gct																																																																														
XRCC2	0	MSKCC	GRCh37	7	152346202	152346202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	46	367	0	ENST00000359321.1:c.368G>A	p.Ser123Asn	p.S123N	ENST00000359321	NM_005431.1	123	aGc/aAc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187222	38187222	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	45	526	3	ENST00000317025.8:c.1255del	p.Thr419ProfsTer8	p.T419Pfs*8	ENST00000317025	NM_023034.1	419	Acc/cc																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	77	272	2	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741985	145741985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	115	331	0	ENST00000428558.2:c.518A>G	p.Gln173Arg	p.Q173R	ENST00000428558	NM_004260.3	173	cAg/cGg																																																																														
TEK	0	MSKCC	GRCh37	9	27212729	27212729	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	87	477	0	ENST00000380036.4:c.2711A>G	p.Tyr904Cys	p.Y904C	ENST00000380036	NM_000459.3	904	tAc/tGc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391896	139391896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	39	367	1	ENST00000277541.6:c.6295G>A	p.Asp2099Asn	p.D2099N	ENST00000277541	NM_017617.3	2099	Gac/Aac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139407473	139407473	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	52	373	0	ENST00000277541.6:c.2467G>T	p.Gly823Cys	p.G823C	ENST00000277541	NM_017617.3	823	Ggt/Tgt																																																																														
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	89	154	0	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																																																														
ARAF	0	MSKCC	GRCh37	X	47426420	47426420	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	50	193	0	ENST00000377045.4:c.763C>G	p.Arg255Gly	p.R255G	ENST00000377045	NM_001654.4	255	Cgg/Ggg																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	18	164	0	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	11	224	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
AR	0	MSKCC	GRCh37	X	66931518	66931519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	100	189	0	ENST00000374690.3:c.2162dup	p.Ala722GlyfsTer47	p.A722Gfs*47	ENST00000374690	NM_000044.3	720	-/A																																																																														
BTK	0	MSKCC	GRCh37	X	100617162	100617162	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0025047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	12	209	0	ENST00000308731.7:c.587A>C	p.Gln196Pro	p.Q196P	ENST00000308731	NM_000061.2	196	cAg/cCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	122	763	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485288	8485288	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	192	629	0	ENST00000356435.5:c.3092A>C	p.Lys1031Thr	p.K1031T	ENST00000356435		1031	aAg/aCg																																																																														
TP53	0	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	84	685	1	ENST00000269305.4:c.830G>A	p.Cys277Tyr	p.C277Y	ENST00000269305	NM_001126112.2	277	tGt/tAt																																																																														
PTPN11	0	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	185	666	0	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																														
INHBA	0	MSKCC	GRCh37	7	41729399	41729399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	52	592	0	ENST00000242208.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000242208	NM_002192.2	377	cGc/cAc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323991	31323991	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1050692		P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	10	116	1	ENST00000412585.2:c.572G>C	p.Trp191Ser	p.W191S	ENST00000412585	NM_005514.6	191	tGg/tCg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15290896	15290896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	255	808	0	ENST00000263388.2:c.3314delG	p.Gly1105AlafsTer167	p.G1105Afs*167	ENST00000263388	NM_000435.2	1105	gGc/gc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856545	111856545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	32	472	1	ENST00000341259.2:c.596C>T	p.Ala199Val	p.A199V	ENST00000341259	NM_005475.2	199	gCg/gTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107186	27107219	+	frameshift_variant	Frame_Shift_Del	DEL	TGATGAACTCATTGGTTTCACAAGTCATTTGTGA	TGATGAACTCATTGGTTTCACAAGTCATTTGTGA	-			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	171	578	1	ENST00000324856.7:c.6799_6832del	p.Met2267TyrfsTer4	p.M2267Yfs*4	ENST00000324856	NM_006015.4	2266	tTGATGAACTCATTGGTTTCACAAGTCATTTGTGAt/tt																																																																														
RAD54L	0	MSKCC	GRCh37	1	46733215	46733215	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	209	713	0	ENST00000371975.4:c.976A>G	p.Thr326Ala	p.T326A	ENST00000371975	NM_003579.3	326	Act/Gct																																																																														
DDR2	0	MSKCC	GRCh37	1	162750028	162750028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	211	545	1	ENST00000367921.3:c.2560G>A	p.Asp854Asn	p.D854N	ENST00000367921	NM_006182.2	854	Gac/Aac																																																																														
ELF3	0	MSKCC	GRCh37	1	201982974	201982974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	267	727	0	ENST00000359651.3:c.823C>A	p.Leu275Met	p.L275M	ENST00000359651		275	Ctg/Atg																																																																														
ARID2	0	MSKCC	GRCh37	12	46230740	46230740	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	142	513	0	ENST00000334344.6:c.989T>G	p.Leu330Ter	p.L330*	ENST00000334344	NM_152641.2	330	tTa/tGa																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50483768	50483768	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	261	581	0	ENST00000394963.4:c.873G>C	p.Gln291His	p.Q291H	ENST00000394963	NM_003076.4	291	caG/caC																																																																														
FLT3	0	MSKCC	GRCh37	13	28578209	28578209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	82	636	0	ENST00000241453.7:c.2962G>T	p.Ala988Ser	p.A988S	ENST00000241453	NM_004119.2	988	Gct/Tct																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252983	36252991	+	inframe_deletion	In_Frame_Del	DEL	CATCTGGAA	CATCTGGAA	-			P-0025051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	95	559	0	ENST00000300305.3:c.371_379del	p.Val124_Asp126del	p.V124_D126del	ENST00000300305		124	gTTCCAGATGgc/ggc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			513	61	403	0				ENST00000310581	NM_198253.2																																																																																
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			858	273	643	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
ARID2	0	MSKCC	GRCh37	12	46230641	46230641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			834	24	485	0	ENST00000334344.6:c.890C>T	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCc/tTc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50459558	50459558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	64	308	0	ENST00000331340.3:c.847C>T	p.Leu283Phe	p.L283F	ENST00000331340	NM_006060.4	283	Ctt/Ttt																																																																														
RET	0	MSKCC	GRCh37	10	43610162	43610162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			720	108	779	1	ENST00000355710.3:c.2114C>T	p.Ser705Phe	p.S705F	ENST00000355710	NM_020975.4	705	tCc/tTc																																																																														
MYCN	0	MSKCC	GRCh37	2	16086130	16086130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			709	104	526	0	ENST00000281043.3:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000281043	NM_005378.4	436	Gag/Aag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52668786	52668786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			642	53	381	0	ENST00000394830.3:c.1133C>T	p.Ser378Phe	p.S378F	ENST00000394830	NM_018313.4	378	tCc/tTc																																																																														
PREX2	0	MSKCC	GRCh37	8	68956771	68956771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			977	115	615	0	ENST00000288368.4:c.889C>T	p.Arg297Cys	p.R297C	ENST00000288368	NM_024870.2	297	Cgt/Tgt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643953	52643953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	62	411	0	ENST00000394830.3:c.1943C>T	p.Ser648Phe	p.S648F	ENST00000394830	NM_018313.4	648	tCt/tTt																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46527611	46527611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			802	116	567	0	ENST00000262741.5:c.754G>A	p.Glu252Lys	p.E252K	ENST00000262741	NM_003629.3	252	Gag/Aag																																																																														
AKT3	0	MSKCC	GRCh37	1	243858952	243858952	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			647	108	568	0	ENST00000263826.5:c.113A>T	p.Tyr38Phe	p.Y38F	ENST00000263826	NM_005465.4	38	tAt/tTt																																																																														
RRAS2	0	MSKCC	GRCh37	11	14303170	14303171	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			718	95	547	3	ENST00000256196.4:c.504_505delinsTT	p.His169Tyr	p.H169Y	ENST00000256196		168	ttCCat/ttTTat																																																																														
MEN1	0	MSKCC	GRCh37	11	64575571	64575572	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			397	65	404	1	ENST00000337652.1:c.461-1_461delinsAA		p.X154_splice	ENST00000337652	NM_130803.2	154																																																																															
FLT1	0	MSKCC	GRCh37	13	28913362	28913362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			998	149	659	1	ENST00000282397.4:c.2431G>A	p.Glu811Lys	p.E811K	ENST00000282397	NM_002019.4	811	Gag/Aag																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872421	35872421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			853	124	601	0	ENST00000216797.5:c.482G>A	p.Gly161Glu	p.G161E	ENST00000216797	NM_020529.2	161	gGa/gAa																																																																														
TRAF7	0	MSKCC	GRCh37	16	2213931	2213931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			858	113	692	0	ENST00000326181.6:c.10G>A	p.Gly4Ser	p.G4S	ENST00000326181	NM_032271.2	4	Ggc/Agc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857077	9857077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	47	321	0	ENST00000330684.3:c.4324C>T	p.Pro1442Ser	p.P1442S	ENST00000330684	NM_001134407.1	1442	Ccc/Tcc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274073	10274073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			763	126	689	0	ENST00000330684.3:c.196G>A	p.Asp66Asn	p.D66N	ENST00000330684	NM_001134407.1	66	Gac/Aac																																																																														
SOS1	0	MSKCC	GRCh37	2	39251184	39251185	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	78	709	0	ENST00000402219.2:c.1168dup	p.Ile390AsnfsTer4	p.I390Nfs*4	ENST00000402219	NM_005633.3	390	ata/aAta																																																																														
PPARG	0	MSKCC	GRCh37	3	12422908	12422908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			928	96	598	0	ENST00000287820.6:c.398C>T	p.Ser133Phe	p.S133F	ENST00000287820	NM_015869.4	133	tCc/tTc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134960002	134960002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			535	78	378	3	ENST00000398015.3:c.2359C>T	p.Pro787Ser	p.P787S	ENST00000398015	NM_004441.4	787	Cct/Tct																																																																														
APC	0	MSKCC	GRCh37	5	112175093	112175093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			317	34	212	0	ENST00000257430.4:c.3802C>T	p.Pro1268Ser	p.P1268S	ENST00000257430	NM_000038.5	1268	Cca/Tca																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187067	38187067	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	134	703	0	ENST00000317025.8:c.1410G>A	p.Trp470Ter	p.W470*	ENST00000317025	NM_023034.1	470	tgG/tgA																																																																														
BTK	0	MSKCC	GRCh37	X	100611838	100611838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024166-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	103	350	0	ENST00000308731.7:c.1283C>T	p.Ala428Val	p.A428V	ENST00000308731	NM_000061.2	428	gCc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	88	552	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965586	93965586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	77	424	0	ENST00000369303.4:c.2342G>T	p.Arg781Leu	p.R781L	ENST00000369303	NM_004440.3	781	cGa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	214	606	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741689	17741689	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	20	410	0	ENST00000250003.3:c.361del	p.Arg121AlafsTer2	p.R121Afs*2	ENST00000250003	NM_002478.4	120	cgC/cg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94194145	94194145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	56	515	0	ENST00000323929.3:c.1283G>T	p.Arg428Met	p.R428M	ENST00000323929	NM_005591.3	428	aGg/aTg																																																																														
ATM	0	MSKCC	GRCh37	11	108200991	108200991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	45	397	0	ENST00000278616.4:c.7358G>C	p.Arg2453Pro	p.R2453P	ENST00000278616	NM_000051.3	2453	cGt/cCt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143235878	143235878	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	37	360	0	ENST00000262992.4:c.410C>A	p.Pro137Gln	p.P137Q	ENST00000262992	NM_001101669.1	137	cCg/cAg																																																																														
STK11	0	MSKCC	GRCh37	19	1221249	1221249	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TAC			P-0024834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	61	626	0	ENST00000326873.7:c.772delinsTAC	p.Asp258TyrfsTer30	p.D258Yfs*30	ENST00000326873	NM_000455.4	258	Gac/TACac																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	336	327	1	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	213	735	1	ENST00000269305.4:c.476C>A	p.Ala159Asp	p.A159D	ENST00000269305	NM_001126112.2	159	gCc/gAc																																																																														
APC	0	MSKCC	GRCh37	5	112164604	112164605	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0024837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	81	328	0	ENST00000257430.4:c.1681_1682del	p.Lys561AspfsTer19	p.K561Dfs*19	ENST00000257430	NM_000038.5	560	AAa/a																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	81	617	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	197	637	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	67	357	2	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	103	585	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	60	274	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	114	573	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281926	49281926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1137	72	623	1	ENST00000282018.3:c.973C>T	p.Pro325Ser	p.P325S	ENST00000282018	NM_020377.2	325	Cca/Tca																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245389	153245389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	126	574	1	ENST00000281708.4:c.1802C>T	p.Ser601Phe	p.S601F	ENST00000281708	NM_033632.3	601	tCt/tTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	212	321	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TBX3	0	MSKCC	GRCh37	12	115120675	115120676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	549	685	1	ENST00000257566.3:c.330dup	p.Glu111ArgfsTer27	p.E111Rfs*27	ENST00000257566	NM_016569.3	110	-/A																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097173	11097173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	360	504	0	ENST00000344626.4:c.664C>A	p.Pro222Thr	p.P222T	ENST00000344626	NM_003072.3	222	Cca/Aca																																																																														
RAC1	0	MSKCC	GRCh37	7	6431637	6431637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024840-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	313	443	0	ENST00000356142.4:c.190T>C	p.Tyr64His	p.Y64H	ENST00000356142	NM_018890.3	64	Tat/Cat																																																																														
MET	0	MSKCC	GRCh37	7	116411886	116411904	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTCTCTGTTTTAAGAT	TTTCTCTCTGTTTTAAGAT	-			P-0024841-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1415	137	765	0	ENST00000397752.3:c.2888-17_2889del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
SMARCD1	0	MSKCC	GRCh37	12	50479218	50479218	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	28	331	0	ENST00000394963.4:c.68del	p.Gly23AlafsTer47	p.G23Afs*47	ENST00000394963	NM_003076.4	22	gcG/gc																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50480132	50480132	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0024843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	26	364	0	ENST00000394963.4:c.365+1G>A		p.X122_splice	ENST00000394963	NM_003076.4	122																																																																															
GATA3	0	MSKCC	GRCh37	10	8100304	8100304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	84	556	2	ENST00000346208.3:c.278C>T	p.Ser93Phe	p.S93F	ENST00000346208		93	tCc/tTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023356	27023356	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	20	276	0	ENST00000324856.7:c.462del	p.Tyr154Ter	p.Y154*	ENST00000324856	NM_006015.4	154	taC/ta																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344648	118344658	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCTGCCAAA	CTTCTGCCAAA	-			P-0024850-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	95	461	1	ENST00000534358.1:c.2774_2784del	p.Ser925Ter	p.S925*	ENST00000534358	NM_005933.3	925	tCTTCTGCCAAA/t																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	339	631	1	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																														
MEN1	0	MSKCC	GRCh37	11	64572194	64572194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	129	405	0	ENST00000337652.1:c.1460G>T	p.Gly487Val	p.G487V	ENST00000337652	NM_130803.2	487	gGc/gTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	114	552	0	ENST00000371953.3:c.70G>T	p.Asp24Tyr	p.D24Y	ENST00000371953	NM_000314.4	24	Gac/Tac																																																																														
SPEN	0	MSKCC	GRCh37	1	16255464	16255464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	62	484	0	ENST00000375759.3:c.2729C>A	p.Ser910Tyr	p.S910Y	ENST00000375759	NM_015001.2	910	tCt/tAt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980874	40980874	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	125	503	1	ENST00000373198.4:c.1612C>T	p.Gln538Ter	p.Q538*	ENST00000373198	NM_133170.3	538	Cag/Tag																																																																														
RTEL1	0	MSKCC	GRCh37	20	62312038	62312038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024858-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	183	659	2	ENST00000508582.2:c.1229C>T	p.Thr410Met	p.T410M	ENST00000508582		410	aCg/aTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	67	510	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	40	314	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	0	MSKCC	GRCh37	4	1806092	1806092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	57	554	0	ENST00000260795.2:c.1111A>T	p.Ser371Cys	p.S371C	ENST00000260795		371	Agt/Tgt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	70	649	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
EP300	0	MSKCC	GRCh37	22	41566488	41566488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	55	543	0	ENST00000263253.7:c.4365G>C	p.Gln1455His	p.Q1455H	ENST00000263253	NM_001429.3	1455	caG/caC																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969327	44969327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	64	420	0	ENST00000377967.4:c.4009G>A	p.Glu1337Lys	p.E1337K	ENST00000377967	NM_021140.2	1337	Gag/Aag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3790455	3790455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	66	497	0	ENST00000262367.5:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000262367	NM_004380.2	1360	Cga/Tga																																																																														
STAG2	0	MSKCC	GRCh37	X	123200024	123200024	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	29	165	0	ENST00000218089.9:c.2097-1G>A		p.X699_splice	ENST00000218089	NM_001042749.1	699																																																																															
PTPRS	0	MSKCC	GRCh37	19	5214596	5214596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	60	498	2	ENST00000357368.4:c.4470G>A	p.Met1490Ile	p.M1490I	ENST00000357368	NM_002850.3	1490	atG/atA																																																																														
UPF1	0	MSKCC	GRCh37	19	18976852	18976852	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	41	455	0	ENST00000262803.5:c.3238-1G>C		p.X1080_splice	ENST00000262803	NM_002911.3	1080																																																																															
WHSC1	0	MSKCC	GRCh37	4	1940242	1940242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	62	367	2	ENST00000382891.5:c.1739C>T	p.Ser580Leu	p.S580L	ENST00000382891	NM_133335.3	580	tCg/tTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187519130	187519130	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	64	421	0	ENST00000441802.2:c.12253C>T	p.Gln4085Ter	p.Q4085*	ENST00000441802	NM_005245.3	4085	Cag/Tag																																																																														
FAT1	0	MSKCC	GRCh37	4	187539973	187539973	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	42	452	0	ENST00000441802.2:c.7767C>G	p.Asp2589Glu	p.D2589E	ENST00000441802	NM_005245.3	2589	gaC/gaG																																																																														
KDM6A	0	MSKCC	GRCh37	X	44966782	44966782	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0024795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	68	615	0	ENST00000377967.4:c.4005+1G>A		p.X1335_splice	ENST00000377967	NM_021140.2	1335																																																																															
TP53	0	MSKCC	GRCh37	17	7579440	7579440	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	478	515	0	ENST00000269305.4:c.247delG	p.Ala83ArgfsTer40	p.A83Rfs*40	ENST00000269305	NM_001126112.2	83	Gcg/cg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374783	118374783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	238	344	0	ENST00000534358.1:c.8176G>T	p.Gly2726Trp	p.G2726W	ENST00000534358	NM_005933.3	2726	Ggg/Tgg																																																																														
CHEK1	0	MSKCC	GRCh37	11	125497570	125497570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	340	316	0	ENST00000428830.2:c.134C>A	p.Ala45Asp	p.A45D	ENST00000428830	NM_001114121.2	45	gCc/gAc																																																																														
RYBP	0	MSKCC	GRCh37	3	72428447	72428447	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	502	566	1	ENST00000477973.2:c.555A>T	p.Glu186Val	p.E186V	ENST00000477973	NM_012234.5	186	gAa/gTa																																																																														
TET2	0	MSKCC	GRCh37	4	106158417	106158417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	228	255	0	ENST00000380013.4:c.3318G>T	p.Glu1106Asp	p.E1106D	ENST00000380013	NM_001127208.2	1106	gaG/gaT																																																																														
TERT	0	MSKCC	GRCh37	5	1293958	1293958	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	1071	624	2	ENST00000310581.5:c.1043G>T	p.Ser348Ile	p.S348I	ENST00000310581	NM_198253.2	348	aGc/aTc																																																																														
RASA1	0	MSKCC	GRCh37	5	86674347	86674347	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	17	297	0	ENST00000274376.6:c.2479T>C	p.Ser827Pro	p.S827P	ENST00000274376	NM_002890.2	827	Tct/Cct																																																																														
FLT4	0	MSKCC	GRCh37	5	180057770	180057770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	322	342	0	ENST00000261937.6:c.185C>A	p.Pro62Gln	p.P62Q	ENST00000261937	NM_182925.4	62	cCa/cAa																																																																														
RASA1	0	MSKCC	GRCh37	5	86679595	86679595	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	139	488	0	ENST00000274376.6:c.2756C>G	p.Ser919Ter	p.S919*	ENST00000274376	NM_002890.2	919	tCa/tGa																																																																														
ATM	0	MSKCC	GRCh37	11	108119660	108119660	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	56	129	0	ENST00000278616.4:c.1066G>A	p.Val356Ile	p.V356I	ENST00000278616	NM_000051.3	356	Gtt/Att																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600393	10600393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	334	776	1	ENST00000171111.5:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000171111	NM_203500.1	488	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	404	720	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																														
FAT1	0	MSKCC	GRCh37	4	187630977	187630977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	99	404	0	ENST00000441802.2:c.5G>T	p.Gly2Val	p.G2V	ENST00000441802	NM_005245.3	2	gGg/gTg																																																																														
NF1	0	MSKCC	GRCh37	17	29585361	29585361	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	177	467	0	ENST00000358273.4:c.4174-1G>T		p.X1392_splice	ENST00000358273	NM_001042492.2	1392																																																																															
DICER1	0	MSKCC	GRCh37	14	95562490	95562490	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	164	343	0	ENST00000343455.3:c.4767G>T	p.Lys1589Asn	p.K1589N	ENST00000343455	NM_177438.2	1589	aaG/aaT																																																																														
TSC2	0	MSKCC	GRCh37	16	2129318	2129318	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	292	604	0	ENST00000219476.3:c.3173A>G	p.Lys1058Arg	p.K1058R	ENST00000219476	NM_000548.3	1058	aAa/aGa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81934347	81934347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	278	483	2	ENST00000359376.3:c.1324C>T	p.Pro442Ser	p.P442S	ENST00000359376	NM_002661.3	442	Ccc/Tcc																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66511574	66511574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	65	307	0	ENST00000358598.2:c.34G>A	p.Ala12Thr	p.A12T	ENST00000358598	NM_212471.2	12	Gca/Aca																																																																														
STK11	0	MSKCC	GRCh37	19	1221966	1221966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	270	690	0	ENST00000326873.7:c.881C>T	p.Pro294Leu	p.P294L	ENST00000326873	NM_000455.4	294	cCg/cTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170510	11170510	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	316	623	2	ENST00000344626.4:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000344626	NM_003072.3	1573	Gag/Tag																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55138644	55138644	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	223	433	0	ENST00000257290.5:c.1321C>A	p.Pro441Thr	p.P441T	ENST00000257290	NM_006206.4	441	Ccg/Acg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139810	55139810	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	198	434	0	ENST00000257290.5:c.1471G>T	p.Ala491Ser	p.A491S	ENST00000257290	NM_006206.4	491	Gcc/Tcc																																																																														
FLT4	0	MSKCC	GRCh37	5	180038374	180038384	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCGTCAGCC	CAGCGTCAGCC	-			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	316	567	0	ENST00000261937.6:c.3633_3643del	p.Ala1212GlyfsTer30	p.A1212Gfs*30	ENST00000261937	NM_182925.4	1211	caGGCTGACGCTGag/caag																																																																														
TAP1	0	MSKCC	GRCh37	6	32818875	32818875	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	266	527	0	ENST00000354258.4:c.1076del	p.Leu359ArgfsTer5	p.L359Rfs*5	ENST00000354258	NM_000593.5	359	cTg/cg																																																																														
ESR1	0	MSKCC	GRCh37	6	152129295	152129295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	256	437	3	ENST00000206249.3:c.248G>T	p.Gly83Val	p.G83V	ENST00000206249	NM_000125.3	83	gGg/gTg																																																																														
HGF	0	MSKCC	GRCh37	7	81388023	81388023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	80	523	0	ENST00000222390.5:c.352C>A	p.Leu118Ile	p.L118I	ENST00000222390	NM_000601.4	118	Ctc/Atc																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128322075	128322075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	220	402	0	ENST00000265960.3:c.685G>T	p.Ala229Ser	p.A229S	ENST00000265960	NM_001006617.1	229	Gcc/Tcc																																																																														
TSC1	0	MSKCC	GRCh37	9	135781186	135781186	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	249	503	0	ENST00000298552.3:c.1779A>T	p.Arg593Ser	p.R593S	ENST00000298552	NM_001162426.1	593	agA/agT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	70	548	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	31	360	0				ENST00000310581	NM_198253.2																																																																																
SOX9	0	MSKCC	GRCh37	17	70120103	70120103	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	16	67	0	ENST00000245479.2:c.1105C>T	p.Gln369Ter	p.Q369*	ENST00000245479	NM_000346.3	369	Cag/Tag																																																																														
INSR	0	MSKCC	GRCh37	19	7267440	7267440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	73	374	0	ENST00000302850.5:c.568G>A	p.Ala190Thr	p.A190T	ENST00000302850	NM_000208.2	190	Gcg/Acg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088786	27088786	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	100	514	0	ENST00000324856.7:c.2395C>T	p.Gln799Ter	p.Q799*	ENST00000324856	NM_006015.4	799	Cag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108143303	108143303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	92	515	0	ENST00000278616.4:c.3122C>T	p.Ala1041Val	p.A1041V	ENST00000278616	NM_000051.3	1041	gCc/gTc																																																																														
ARID2	0	MSKCC	GRCh37	12	46254654	46254654	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	77	430	0	ENST00000334344.6:c.4844T>G	p.Phe1615Cys	p.F1615C	ENST00000334344	NM_152641.2	1615	tTc/tGc																																																																														
SLX4	0	MSKCC	GRCh37	16	3658470	3658470	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	98	583	2	ENST00000294008.3:c.496C>T	p.Gln166Ter	p.Q166*	ENST00000294008	NM_032444.2	166	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578374	7578375	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTATCTG			P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	89	488	0	ENST00000269305.4:c.548_555dup	p.Asp186GlnfsTer64	p.D186Qfs*64	ENST00000269305	NM_001126112.2	185	-/CAGATAGC																																																																														
SOX9	0	MSKCC	GRCh37	17	70119856	70119856	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	93	501	1	ENST00000245479.2:c.858del	p.Ile286MetfsTer97	p.I286Mfs*97	ENST00000245479	NM_000346.3	286	atC/at																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713479	30713480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGCAGTTTGAGACAGTGG			P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	41	445	0	ENST00000359013.4:c.880_898dup	p.Ala300GlyfsTer4	p.A300Gfs*4	ENST00000359013	NM_001024847.2	293	-/GAGCAGTTTGAGACAGTGG																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732949	30732949	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	73	267	0	ENST00000359013.4:c.1637G>A	p.Trp546Ter	p.W546*	ENST00000359013	NM_001024847.2	546	tGg/tAg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266059	41266097	+	inframe_deletion	In_Frame_Del	DEL	AAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGG	AAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGG	-			P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	199	288	0	ENST00000349496.5:c.57_95del	p.Lys19_Asp32delinsAsn	p.K19_D32delinsN	ENST00000349496	NM_001904.3	19	aAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGac/aac																																																																														
PREX2	0	MSKCC	GRCh37	8	69030862	69030862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	84	345	1	ENST00000288368.4:c.3404G>T	p.Ser1135Ile	p.S1135I	ENST00000288368	NM_024870.2	1135	aGt/aTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	96	579	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112174466	112174466	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	19	278	1	ENST00000257430.4:c.3175G>T	p.Glu1059Ter	p.E1059*	ENST00000257430	NM_000038.5	1059	Gaa/Taa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021211	31021211	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	110	485	2	ENST00000375687.4:c.1210C>T	p.Arg404Ter	p.R404*	ENST00000375687	NM_015338.5	404	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	36	204	0	ENST00000257430.4:c.3980C>G	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tGa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114905790	114905790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	98	560	0	ENST00000543371.1:c.809C>T	p.Pro270Leu	p.P270L	ENST00000543371	NM_001198531.1	270	cCa/cTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	126	571	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	94	270	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	104	502	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936103	178936103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	152	686	0	ENST00000263967.3:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000263967	NM_006218.2	549	Gat/Aat																																																																														
BRCA2	0	MSKCC	GRCh37	13	32915168	32915168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	144	477	0	ENST00000380152.3:c.6676G>C	p.Glu2226Gln	p.E2226Q	ENST00000380152		2226	Gaa/Caa																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467485	25467485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	185	500	2	ENST00000264709.3:c.1591G>A	p.Asp531Asn	p.D531N	ENST00000264709	NM_175629.2	531	Gac/Aac																																																																														
FAM46C	0	MSKCC	GRCh37	1	118166184	118166184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	36	281	0	ENST00000369448.3:c.694G>A	p.Ala232Thr	p.A232T	ENST00000369448	NM_017709.3	232	Gcc/Acc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56189427	56189427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	194	524	1	ENST00000399503.3:c.4459C>T	p.Arg1487Cys	p.R1487C	ENST00000399503	NM_005921.1	1487	Cgt/Tgt																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120359	94120359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	60	242	0	ENST00000369303.4:c.692G>A	p.Arg231Gln	p.R231Q	ENST00000369303	NM_004440.3	231	cGa/cAa																																																																														
ETV6	0	MSKCC	GRCh37	12	12038881	12038881	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	169	360	0	ENST00000396373.4:c.1174G>C	p.Glu392Gln	p.E392Q	ENST00000396373	NM_001987.4	392	Gag/Cag																																																																														
PREX2	0	MSKCC	GRCh37	8	68864769	68864769	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	103	331	0	ENST00000288368.4:c.140C>T	p.Ser47Leu	p.S47L	ENST00000288368	NM_024870.2	47	tCg/tTg																																																																														
ATRX	0	MSKCC	GRCh37	X	76778810	76778810	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	188	342	0	ENST00000373344.5:c.6769C>G	p.Leu2257Val	p.L2257V	ENST00000373344	NM_000489.3	2257	Ctt/Gtt																																																																														
MUTYH	0	MSKCC	GRCh37	1	45799159	45799159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	186	562	0	ENST00000372115.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000372115	NM_001048171.1	78	Gaa/Aaa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244590	41244590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	195	606	0	ENST00000357654.3:c.2958C>G	p.Ile986Met	p.I986M	ENST00000357654	NM_007294.3	986	atC/atG																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798353	45798353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	161	478	0	ENST00000372115.3:c.541G>C	p.Glu181Gln	p.E181Q	ENST00000372115	NM_001048171.1	181	Gag/Cag																																																																														
MUTYH	0	MSKCC	GRCh37	1	45798987	45798987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	187	543	1	ENST00000372115.3:c.316G>A	p.Glu106Lys	p.E106K	ENST00000372115	NM_001048171.1	106	Gag/Aag																																																																														
ELF3	0	MSKCC	GRCh37	1	201984428	201984428	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	178	489	0	ENST00000359651.3:c.1093G>C	p.Glu365Gln	p.E365Q	ENST00000359651		365	Gag/Cag																																																																														
FH	0	MSKCC	GRCh37	1	241669450	241669450	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	105	347	0	ENST00000366560.3:c.757C>T	p.Gln253Ter	p.Q253*	ENST00000366560	NM_000143.3	253	Caa/Taa																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850870	63850870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	112	329	0	ENST00000279873.7:c.1648G>A	p.Glu550Lys	p.E550K	ENST00000279873	NM_032199.2	550	Gaa/Aaa																																																																														
TET1	0	MSKCC	GRCh37	10	70404592	70404592	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	177	458	0	ENST00000373644.4:c.2106G>C	p.Met702Ile	p.M702I	ENST00000373644	NM_030625.2	702	atG/atC																																																																														
BIRC3	0	MSKCC	GRCh37	11	102206798	102206798	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	224	549	0	ENST00000263464.3:c.1426G>C	p.Glu476Gln	p.E476Q	ENST00000263464	NM_001165.4	476	Gaa/Caa																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885279	111885279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	148	467	0	ENST00000341259.2:c.1167C>A	p.Phe389Leu	p.F389L	ENST00000341259	NM_005475.2	389	ttC/ttA																																																																														
SETD8	0	MSKCC	GRCh37	12	123879672	123879673	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	20	118	0	ENST00000330479.4:c.368_369delinsTA	p.Pro123Leu	p.P123L	ENST00000330479	NM_020382.3	123	cCC/cTA																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911530	32911530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	132	437	0	ENST00000380152.3:c.3038C>T	p.Ser1013Leu	p.S1013L	ENST00000380152		1013	tCa/tTa																																																																														
RB1	0	MSKCC	GRCh37	13	48923097	48923097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	171	465	0	ENST00000267163.4:c.545C>A	p.Ser182Tyr	p.S182Y	ENST00000267163	NM_000321.2	182	tCt/tAt																																																																														
DICER1	0	MSKCC	GRCh37	14	95562918	95562918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	88	354	0	ENST00000343455.3:c.4339C>G	p.Gln1447Glu	p.Q1447E	ENST00000343455	NM_177438.2	1447	Cag/Gag																																																																														
MGA	0	MSKCC	GRCh37	15	42058201	42058201	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	51	175	0	ENST00000219905.7:c.7922-1G>C		p.X2641_splice	ENST00000219905	NM_001164273.1	2641																																																																															
MGA	0	MSKCC	GRCh37	15	42058849	42058849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	98	332	0	ENST00000219905.7:c.8569G>A	p.Gly2857Arg	p.G2857R	ENST00000219905	NM_001164273.1	2857	Ggg/Agg																																																																														
MGA	0	MSKCC	GRCh37	15	42058936	42058936	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	104	336	0	ENST00000219905.7:c.8656G>C	p.Glu2886Gln	p.E2886Q	ENST00000219905	NM_001164273.1	2886	Gag/Cag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43762097	43762097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	193	534	0	ENST00000382044.4:c.1348C>G	p.Pro450Ala	p.P450A	ENST00000382044	NM_001141980.1	450	Cct/Gct																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041572	14041572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	135	423	0	ENST00000311895.7:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000311895	NM_005236.2	707	Gaa/Aaa																																																																														
PALB2	0	MSKCC	GRCh37	16	23641643	23641643	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	118	495	0	ENST00000261584.4:c.1832A>T	p.Asp611Val	p.D611V	ENST00000261584	NM_024675.3	611	gAc/gTc																																																																														
GPS2	0	MSKCC	GRCh37	17	7217837	7217837	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	231	712	0	ENST00000380728.2:c.174G>C	p.Glu58Asp	p.E58D	ENST00000380728		58	gaG/gaC																																																																														
BRCA1	0	MSKCC	GRCh37	17	41223171	41223171	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	167	584	0	ENST00000357654.3:c.4760C>G	p.Ser1587Ter	p.S1587*	ENST00000357654	NM_007294.3	1587	tCa/tGa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15290990	15290990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	150	621	0	ENST00000263388.2:c.3220G>A	p.Glu1074Lys	p.E1074K	ENST00000263388	NM_000435.2	1074	Gag/Aag																																																																														
ALK	0	MSKCC	GRCh37	2	29917810	29917810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	175	580	0	ENST00000389048.3:c.858G>C	p.Gln286His	p.Q286H	ENST00000389048	NM_004304.4	286	caG/caC																																																																														
ALK	0	MSKCC	GRCh37	2	30142927	30142927	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	194	538	0	ENST00000389048.3:c.599G>C	p.Arg200Thr	p.R200T	ENST00000389048	NM_004304.4	200	aGa/aCa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095698	178095698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	171	488	0	ENST00000397062.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000397062	NM_006164.4	545	Gaa/Aaa																																																																														
PMS1	0	MSKCC	GRCh37	2	190728473	190728473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	84	290	0	ENST00000441310.2:c.1861G>A	p.Glu621Lys	p.E621K	ENST00000441310	NM_000534.4	621	Gaa/Aaa																																																																														
BARD1	0	MSKCC	GRCh37	2	215595191	215595191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	163	532	0	ENST00000260947.4:c.1945G>A	p.Glu649Lys	p.E649K	ENST00000260947	NM_000465.2	649	Gaa/Aaa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62323156	62323156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	104	325	0	ENST00000508582.2:c.2690G>T	p.Gly897Val	p.G897V	ENST00000508582		897	gGa/gTa																																																																														
EP300	0	MSKCC	GRCh37	22	41545177	41545177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	205	462	0	ENST00000263253.7:c.2377C>G	p.Gln793Glu	p.Q793E	ENST00000263253	NM_001429.3	793	Caa/Gaa																																																																														
EP300	0	MSKCC	GRCh37	22	41568489	41568517	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCATGTTTTCACAGGATATTTTTAAACAA	GCATGTTTTCACAGGATATTTTTAAACAA	-			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	120	303	0	ENST00000263253.7:c.4453-12_4469del		p.X1485_splice	ENST00000263253	NM_001429.3	1485																																																																															
CTNNB1	0	MSKCC	GRCh37	3	41280627	41280627	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	157	529	0	ENST00000349496.5:c.2140C>G	p.Pro714Ala	p.P714A	ENST00000349496	NM_001904.3	714	Cct/Gct																																																																														
SETD2	0	MSKCC	GRCh37	3	47164255	47164255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	131	418	0	ENST00000409792.3:c.1871C>T	p.Ser624Leu	p.S624L	ENST00000409792	NM_014159.6	624	tCa/tTa																																																																														
BAP1	0	MSKCC	GRCh37	3	52441226	52441226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	121	315	0	ENST00000460680.1:c.544G>C	p.Glu182Gln	p.E182Q	ENST00000460680	NM_004656.3	182	Gag/Cag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643624	52643624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	152	504	0	ENST00000394830.3:c.2272G>A	p.Glu758Lys	p.E758K	ENST00000394830	NM_018313.4	758	Gaa/Aaa																																																																														
TP63	0	MSKCC	GRCh37	3	189584506	189584506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	117	363	0	ENST00000264731.3:c.802G>C	p.Glu268Gln	p.E268Q	ENST00000264731	NM_003722.4	268	Gag/Cag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1940229	1940229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	35	279	0	ENST00000382891.5:c.1726G>A	p.Glu576Lys	p.E576K	ENST00000382891	NM_133335.3	576	Gag/Aag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153252020	153252020	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	154	453	0	ENST00000281708.4:c.986G>C	p.Gly329Ala	p.G329A	ENST00000281708	NM_033632.3	329	gGg/gCg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332595	153332595	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	114	406	0	ENST00000281708.4:c.361G>T	p.Glu121Ter	p.E121*	ENST00000281708	NM_033632.3	121	Gag/Tag																																																																														
RICTOR	0	MSKCC	GRCh37	5	38952406	38952406	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	129	316	0	ENST00000357387.3:c.3019G>C	p.Asp1007His	p.D1007H	ENST00000357387	NM_152756.3	1007	Gat/Cat																																																																														
NPM1	0	MSKCC	GRCh37	5	170819735	170819735	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	36	122	0	ENST00000296930.5:c.374C>G	p.Ser125Ter	p.S125*	ENST00000296930	NM_002520.6	125	tCa/tGa																																																																														
NSD1	0	MSKCC	GRCh37	5	176638911	176638911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	43	495	0	ENST00000439151.2:c.3511C>T	p.Arg1171Cys	p.R1171C	ENST00000439151	NM_022455.4	1171	Cgt/Tgt																																																																														
MDC1	0	MSKCC	GRCh37	6	30671570	30671570	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	164	559	0	ENST00000376406.3:c.5390C>G	p.Ser1797Cys	p.S1797C	ENST00000376406	NM_014641.2	1797	tCt/tGt																																																																														
MDC1	0	MSKCC	GRCh37	6	30680095	30680095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	153	541	0	ENST00000376406.3:c.1624C>G	p.Gln542Glu	p.Q542E	ENST00000376406	NM_014641.2	542	Cag/Gag																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324875	31324875	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	37	174	0	ENST00000412585.2:c.61G>T	p.Glu21Ter	p.E21*	ENST00000412585	NM_005514.6	21	Gag/Tag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163434	32163434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	36	506	0	ENST00000375023.3:c.5792G>A	p.Arg1931Gln	p.R1931Q	ENST00000375023	NM_004557.3	1931	cGa/cAa																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120324	94120324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	53	241	0	ENST00000369303.4:c.727G>A	p.Glu243Lys	p.E243K	ENST00000369303	NM_004440.3	243	Gaa/Aaa																																																																														
CDK6	0	MSKCC	GRCh37	7	92404114	92404114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	30	371	0	ENST00000265734.4:c.265G>A	p.Asp89Asn	p.D89N	ENST00000265734	NM_001259.6	89	Gac/Aac																																																																														
BRAF	673	MSKCC	GRCh37	7	140534600	140534601	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	103	423	0	ENST00000288602.6:c.312dup	p.Asn105GlufsTer4	p.N105Efs*4	ENST00000288602	NM_004333.4	104	-/G																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859732	151859732	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	91	325	0	ENST00000262189.6:c.10930C>G	p.Pro3644Ala	p.P3644A	ENST00000262189	NM_170606.2	3644	Cct/Gct																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859782	151859782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	102	329	0	ENST00000262189.6:c.10880C>G	p.Ser3627Ter	p.S3627*	ENST00000262189	NM_170606.2	3627	tCa/tGa																																																																														
NBN	0	MSKCC	GRCh37	8	90965489	90965489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	22	313	1	ENST00000265433.3:c.1828G>A	p.Glu610Lys	p.E610K	ENST00000265433	NM_002485.4	610	Gaa/Aaa																																																																														
ABL1	0	MSKCC	GRCh37	9	133760044	133760044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	39	533	0	ENST00000318560.5:c.2367G>T	p.Lys789Asn	p.K789N	ENST00000318560	NM_005157.4	789	aaG/aaT																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412639	139412639	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	141	476	0	ENST00000277541.6:c.1205C>A	p.Ser402Ter	p.S402*	ENST00000277541	NM_017617.3	402	tCg/tAg																																																																														
TRAF2	0	MSKCC	GRCh37	9	139793346	139793346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	147	497	0	ENST00000247668.2:c.154C>T	p.Arg52Trp	p.R52W	ENST00000247668	NM_021138.3	52	Cgg/Tgg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412698	63412698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	86	230	0	ENST00000330258.3:c.469G>C	p.Glu157Gln	p.E157Q	ENST00000330258	NM_152424.3	157	Gag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	95	511	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579430	7579448	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGGGGCCGCCGGTGTAG	GCAGGGGCCGCCGGTGTAG	-			P-0024873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	324	548	0	ENST00000269305.4:c.239_257del	p.Pro80HisfsTer37	p.P80Hfs*37	ENST00000269305	NM_001126112.2	80	cCTACACCGGCGGCCCCTGCa/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	172	767	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
BAP1	0	MSKCC	GRCh37	3	52439796	52439796	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	194	568	0	ENST00000460680.1:c.916G>T	p.Glu306Ter	p.E306*	ENST00000460680	NM_004656.3	306	Gag/Tag																																																																														
TET1	0	MSKCC	GRCh37	10	70405044	70405044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	54	604	1	ENST00000373644.4:c.2558G>T	p.Gly853Val	p.G853V	ENST00000373644	NM_030625.2	853	gGt/gTt																																																																														
NF2	0	MSKCC	GRCh37	22	30060983	30060984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0024877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	137	553	0	ENST00000338641.4:c.817_818dup	p.Lys274LeufsTer23	p.K274Lfs*23	ENST00000338641	NM_000268.3	272	act/acTAt																																																																														
SETD2	0	MSKCC	GRCh37	3	47164525	47164525	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024877-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	56	458	1	ENST00000409792.3:c.1601del	p.Pro534LeufsTer45	p.P534Lfs*45	ENST00000409792	NM_014159.6	534	cCt/ct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	74	702	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CBL	0	MSKCC	GRCh37	11	119148922	119148922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	104	489	0	ENST00000264033.4:c.1142G>A	p.Cys381Tyr	p.C381Y	ENST00000264033	NM_005188.3	381	tGt/tAt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023108	31023108	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	174	593	0	ENST00000375687.4:c.2593G>T	p.Glu865Ter	p.E865*	ENST00000375687	NM_015338.5	865	Gaa/Taa																																																																														
NTRK1	0	MSKCC	GRCh37	1	156844792	156844792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	42	627	0	ENST00000524377.1:c.1346G>C	p.Gly449Ala	p.G449A	ENST00000524377	NM_002529.3	449	gGg/gCg																																																																														
WT1	0	MSKCC	GRCh37	11	32456423	32456424	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	195	718	2	ENST00000332351.3:c.468_469delinsAA	p.Cys156_Leu157delinsTer	p.C156_L157delins*	ENST00000332351	NM_024426.4	156	tgCCtg/tgAAtg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857426	9857426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	121	562	0	ENST00000330684.3:c.3975C>A	p.Tyr1325Ter	p.Y1325*	ENST00000330684	NM_001134407.1	1325	taC/taA																																																																														
SHQ1	0	MSKCC	GRCh37	3	72799517	72799517	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	158	752	1	ENST00000325599.8:c.1652A>G	p.Gln551Arg	p.Q551R	ENST00000325599	NM_018130.2	551	cAg/cGg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178919164	178919164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	66	349	0	ENST00000263967.3:c.649C>G	p.Pro217Ala	p.P217A	ENST00000263967	NM_006218.2	217	Cca/Gca																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928053	178928053	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	160	678	0	ENST00000263967.3:c.1331A>T	p.Asn444Ile	p.N444I	ENST00000263967	NM_006218.2	444	aAt/aTt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66189937	66189937	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	67	298	1	ENST00000273854.3:c.3009G>T	p.Glu1003Asp	p.E1003D	ENST00000273854	NM_004439.5	1003	gaG/gaT																																																																														
IRF4	0	MSKCC	GRCh37	6	401736	401736	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024921-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	107	625	0	ENST00000380956.4:c.1058A>T	p.Asp353Val	p.D353V	ENST00000380956	NM_001195286.1	353	gAc/gTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	201	738	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SETD2	0	MSKCC	GRCh37	3	47162267	47162267	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	68	425	0	ENST00000409792.3:c.3859C>T	p.Gln1287Ter	p.Q1287*	ENST00000409792	NM_014159.6	1287	Cag/Tag																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165518	118165519	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0006677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	42	395	1	ENST00000369448.3:c.28_29delinsTT	p.Asp10Phe	p.D10F	ENST00000369448	NM_017709.3	10	GAt/TTt																																																																														
ALK	0	MSKCC	GRCh37	2	29606638	29606638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	76	786	0	ENST00000389048.3:c.1242G>T	p.Leu414Phe	p.L414F	ENST00000389048	NM_004304.4	414	ttG/ttT																																																																														
PTPRT	0	MSKCC	GRCh37	20	40757417	40757417	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			405	71	835	0	ENST00000373198.4:c.2881T>A	p.Tyr961Asn	p.Y961N	ENST00000373198	NM_133170.3	961	Tac/Aac																																																																														
ESR1	0	MSKCC	GRCh37	6	152265554	152265554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	51	680	0	ENST00000206249.3:c.1007C>A	p.Pro336His	p.P336H	ENST00000206249	NM_000125.3	336	cCc/cAc																																																																														
RBM10	0	MSKCC	GRCh37	X	47040801	47040801	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0006677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			453	79	795	1	ENST00000329236.7:c.1201+1G>T		p.X401_splice	ENST00000329236	NM_001204466.1	401																																																																															
KDM5C	0	MSKCC	GRCh37	X	53247085	53247085	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			427	40	737	0	ENST00000375401.3:c.415C>T	p.Gln139Ter	p.Q139*	ENST00000375401	NM_004187.3	139	Cag/Tag																																																																														
AR	0	MSKCC	GRCh37	X	66765297	66765297	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006677-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	76	868	0	ENST00000374690.3:c.312del	p.Thr105GlnfsTer70	p.T105Qfs*70	ENST00000374690	NM_000044.3	103	ggC/gg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	289	923	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445100	49445101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024656-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	121	934	0	ENST00000301067.7:c.2365dup	p.Ser789PhefsTer5	p.S789Ffs*5	ENST00000301067	NM_003482.3	789	tcc/tTcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	54	636	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	25	513	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	25	513	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	25	513	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	175	631	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0024739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	112	672	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851697	134851697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	47	485	0	ENST00000398015.3:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000398015	NM_004441.4	368	cGg/cAg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482649	56482649	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs200211366		P-0024739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	167	631	0	ENST00000267101.3:c.1106A>G	p.Asn369Ser	p.N369S	ENST00000267101	NM_001982.3	369	aAt/aGt																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31379416	31379416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	30	500	0	ENST00000328111.2:c.823G>T	p.Asp275Tyr	p.D275Y	ENST00000328111	NM_006892.3	275	Gac/Tac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	122	622	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	343	617	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
MITF	0	MSKCC	GRCh37	3	69987114	69987114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145387068		P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	93	474	0	ENST00000352241.4:c.496G>A	p.Asp166Asn	p.D166N	ENST00000352241	NM_198159.2	166	Gat/Aat																																																																														
RET	0	MSKCC	GRCh37	10	43596002	43596002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	189	576	1	ENST00000355710.3:c.169C>T	p.Arg57Trp	p.R57W	ENST00000355710	NM_020975.4	57	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	43	340	1	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																																																														
APC	0	MSKCC	GRCh37	5	112175770	112175770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	46	251	0	ENST00000257430.4:c.4480delG	p.Glu1494LysfsTer13	p.E1494Kfs*13	ENST00000257430	NM_000038.5	1493	acG/ac																																																																														
SOX9	0	MSKCC	GRCh37	17	70119966	70120018	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	-			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	46	246	0	ENST00000245479.2:c.970_1022del	p.Thr324AlafsTer236	p.T324Afs*236	ENST00000245479	NM_000346.3	323	aGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG/a																																																																														
LATS2	0	MSKCC	GRCh37	13	21549357	21549357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	64	483	1	ENST00000382592.4:c.2919C>A	p.Phe973Leu	p.F973L	ENST00000382592	NM_014572.2	973	ttC/ttA																																																																														
LATS2	0	MSKCC	GRCh37	13	21562128	21562128	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	194	1018	2	ENST00000382592.4:c.1791C>A	p.Tyr597Ter	p.Y597*	ENST00000382592	NM_014572.2	597	taC/taA																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350636	89350636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	52	1084	2	ENST00000301030.4:c.2314C>T	p.Arg772Trp	p.R772W	ENST00000301030	NM_001256183.1	772	Cgg/Tgg																																																																														
CDK12	0	MSKCC	GRCh37	17	37618525	37618525	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	80	497	0	ENST00000447079.4:c.201C>G	p.Ile67Met	p.I67M	ENST00000447079	NM_015083.1	67	atC/atG																																																																														
TP53	0	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	428	719	0	ENST00000269305.4:c.757A>G	p.Thr253Ala	p.T253A	ENST00000269305	NM_001126112.2	253	Acc/Gcc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692800	89692800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	202	433	0	ENST00000371953.3:c.284C>T	p.Pro95Leu	p.P95L	ENST00000371953	NM_000314.4	95	cCa/cTa																																																																														
ARID2	0	MSKCC	GRCh37	12	46244377	46244377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	143	482	0	ENST00000334344.6:c.2471C>T	p.Thr824Ile	p.T824I	ENST00000334344	NM_152641.2	824	aCa/aTa																																																																														
RB1	0	MSKCC	GRCh37	13	48954187	48954187	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0024746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	197	384	0	ENST00000267163.4:c.1390-2A>C		p.X464_splice	ENST00000267163	NM_000321.2	464																																																																															
MGA	0	MSKCC	GRCh37	15	42003122	42003122	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	487	734	0	ENST00000219905.7:c.2659A>T	p.Lys887Ter	p.K887*	ENST00000219905	NM_001164273.1	887	Aaa/Taa																																																																														
CRLF2	0	MSKCC	GRCh37	X	1317533	1317533	+	downstream_gene_variant	3'Flank	SNP	C	C	T	rs199794164		P-0024747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	427	631	0				ENST00000381566																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0024772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	141	680	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0024772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	28	580	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245432	153245432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	36	681	0	ENST00000281708.4:c.1759A>G	p.Met587Val	p.M587V	ENST00000281708	NM_033632.3	587	Atg/Gtg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	67	512	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	95	556	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	65	703	0	ENST00000269305.4:c.1045del	p.Glu349AsnfsTer21	p.E349Nfs*21	ENST00000269305	NM_001126112.2	349	Gaa/aa																																																																														
NF2	0	MSKCC	GRCh37	22	30038233	30038233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	26	664	0	ENST00000338641.4:c.406G>A	p.Glu136Lys	p.E136K	ENST00000338641	NM_000268.3	136	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	817	649	1	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
RB1	0	MSKCC	GRCh37	13	48953760	48953760	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	249	332	1	ENST00000267163.4:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000267163	NM_000321.2	455	Cga/Tga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100414	157100414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	11	31	0	ENST00000346085.5:c.1351T>C	p.Ser451Pro	p.S451P	ENST00000346085	NM_020732.3	451	Tcg/Ccg																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46512220	46512222	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TAC	TAC	-			P-0024790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	362	498	4	ENST00000262741.5:c.1016+1_1016+3del		p.X339_splice	ENST00000262741	NM_003629.3	339																																																																															
FUBP1	0	MSKCC	GRCh37	1	78428538	78428538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	404	610	1	ENST00000370768.2:c.1261G>T	p.Asp421Tyr	p.D421Y	ENST00000370768	NM_003902.3	421	Gat/Tat																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120457991	120457991	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	345	523	1	ENST00000256646.2:c.7354C>T	p.Gln2452Ter	p.Q2452*	ENST00000256646	NM_024408.3	2452	Cag/Tag																																																																														
TET1	0	MSKCC	GRCh37	10	70332357	70332357	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	37	510	0	ENST00000373644.4:c.262G>T	p.Glu88Ter	p.E88*	ENST00000373644	NM_030625.2	88	Gag/Tag																																																																														
TBX3	0	MSKCC	GRCh37	12	115114264	115114264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	162	503	0	ENST00000257566.3:c.953C>A	p.Thr318Asn	p.T318N	ENST00000257566	NM_016569.3	318	aCc/aAc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2224048	2224048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0024790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	350	607	0	ENST00000326181.6:c.1262A>C	p.Lys421Thr	p.K421T	ENST00000326181	NM_032271.2	421	aAg/aCg																																																																														
NF1	0	MSKCC	GRCh37	17	29556925	29556925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	150	145	0	ENST00000358273.4:c.2923C>T	p.His975Tyr	p.H975Y	ENST00000358273	NM_001042492.2	975	Cat/Tat																																																																														
TET2	0	MSKCC	GRCh37	4	106164022	106164022	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	249	411	1	ENST00000380013.4:c.3532G>T	p.Glu1178Ter	p.E1178*	ENST00000380013	NM_001127208.2	1178	Gaa/Taa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106523594	106523594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	275	346	0	ENST00000359195.3:c.2746C>A	p.Pro916Thr	p.P916T	ENST00000359195	NM_002649.2	916	Cct/Act																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741443	145741443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	462	783	4	ENST00000428558.2:c.1060G>A	p.Val354Ile	p.V354I	ENST00000428558	NM_004260.3	354	Gta/Ata																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	133	648	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	121	551	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	86	291	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
MTOR	0	MSKCC	GRCh37	1	11177098	11177098	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	131	597	0	ENST00000361445.4:c.6979A>G	p.Met2327Val	p.M2327V	ENST00000361445	NM_004958.3	2327	Atg/Gtg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	286	579	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89521721	89521721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	133	471	0	ENST00000336596.2:c.2798C>T	p.Thr933Met	p.T933M	ENST00000336596	NM_005233.5	933	aCg/aTg																																																																														
RET	0	MSKCC	GRCh37	10	43610043	43610043	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	82	841	2	ENST00000355710.3:c.1995C>A	p.His665Gln	p.H665Q	ENST00000355710	NM_020975.4	665	caC/caA																																																																														
RET	0	MSKCC	GRCh37	10	43613833	43613833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	111	779	0	ENST00000355710.3:c.2297C>T	p.Pro766Leu	p.P766L	ENST00000355710	NM_020975.4	766	cCg/cTg																																																																														
TET1	0	MSKCC	GRCh37	10	70332772	70332772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	118	551	0	ENST00000373644.4:c.677G>T	p.Gly226Val	p.G226V	ENST00000373644	NM_030625.2	226	gGa/gTa																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244702	41244702	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	198	778	0	ENST00000357654.3:c.2846G>C	p.Gly949Ala	p.G949A	ENST00000357654	NM_007294.3	949	gGc/gCc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78919537	78919538	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCTTCACG			P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	119	552	0	ENST00000306801.3:c.3099_3107dup	p.Phe1034_Pro1036dup	p.F1034_P1036dup	ENST00000306801	NM_020761.2	1034	-/CCCTTCACG																																																																														
APC	0	MSKCC	GRCh37	5	112173879	112173879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	76	416	0	ENST00000257430.4:c.2588A>G	p.Tyr863Cys	p.Y863C	ENST00000257430	NM_000038.5	863	tAc/tGc																																																																														
APC	0	MSKCC	GRCh37	5	112174223	112174224	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	163	439	0	ENST00000257430.4:c.2935dup	p.Met979AsnfsTer6	p.M979Nfs*6	ENST00000257430	NM_000038.5	978	caa/cAaa																																																																														
HGF	0	MSKCC	GRCh37	7	81381454	81381454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	58	374	0	ENST00000222390.5:c.607A>G	p.Ile203Val	p.I203V	ENST00000222390	NM_000601.4	203	Att/Gtt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0022048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	53	381	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0022048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	58	46	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																														
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0022048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	199	603	4	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg																																																																														
ARID2	0	MSKCC	GRCh37	12	46244689	46244689	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	179	661	1	ENST00000334344.6:c.2783T>C	p.Ile928Thr	p.I928T	ENST00000334344	NM_152641.2	928	aTt/aCt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112406	115112406	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	173	519	0	ENST00000257566.3:c.1334G>C	p.Ser445Thr	p.S445T	ENST00000257566	NM_016569.3	445	aGc/aCc																																																																														
TBX3	0	MSKCC	GRCh37	12	115117423	115117471	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGGCTGGTATTTGTGCATGGAGTTCAATATAGTCTGCAGGGGCAGGGA	GGGGCTGGTATTTGTGCATGGAGTTCAATATAGTCTGCAGGGGCAGGGA	-			P-0022048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	122	488	0	ENST00000257566.3:c.718-15_751del		p.X240_splice	ENST00000257566	NM_016569.3	240																																																																															
FOXO1	0	MSKCC	GRCh37	13	41134317	41134317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	91	557	2	ENST00000379561.5:c.1311G>A	p.Met437Ile	p.M437I	ENST00000379561	NM_002015.3	437	atG/atA																																																																														
RPTOR	0	MSKCC	GRCh37	17	78921071	78921071	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	85	697	1	ENST00000306801.3:c.3185A>G	p.Asn1062Ser	p.N1062S	ENST00000306801	NM_020761.2	1062	aAt/aGt																																																																														
CCNE1	0	MSKCC	GRCh37	19	30313428	30313428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	138	624	1	ENST00000262643.3:c.1028G>A	p.Ser343Asn	p.S343N	ENST00000262643	NM_001238.2	343	aGc/aAc																																																																														
MSH6	0	MSKCC	GRCh37	2	48026807	48026807	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	122	526	0	ENST00000234420.5:c.1685A>C	p.Asp562Ala	p.D562A	ENST00000234420	NM_000179.2	562	gAt/gCt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952074	178952075	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0022048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	11	437	1	ENST00000263967.3:c.3129_3130inv	p.Met1043_Asn1044delinsIleHis	p.M1043_N1044delinsIH	ENST00000263967	NM_006218.2	1043	atGAat/atTCat																																																																														
TP63	0	MSKCC	GRCh37	3	189590736	189590736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	67	645	2	ENST00000264731.3:c.1301C>T	p.Thr434Met	p.T434M	ENST00000264731	NM_003722.4	434	aCg/aTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151960118	151960119	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	108	574	0	ENST00000262189.6:c.1281_1282insT	p.Asn428Ter	p.N428*	ENST00000262189	NM_170606.2	427	-/T																																																																														
MEN1	0	MSKCC	GRCh37	11	64577280	64577280	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	56	1032	0	ENST00000337652.1:c.302T>A	p.Val101Asp	p.V101D	ENST00000337652	NM_130803.2	101	gTc/gAc																																																																														
ATM	0	MSKCC	GRCh37	11	108139310	108139310	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	55	1055	0	ENST00000278616.4:c.2813del	p.Pro938LeufsTer11	p.P938Lfs*11	ENST00000278616	NM_000051.3	938	Cct/ct																																																																														
PTCH1	0	MSKCC	GRCh37	9	98220549	98220549	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	23	669	0	ENST00000331920.6:c.2914del	p.Ala972ProfsTer23	p.A972Pfs*23	ENST00000331920	NM_000264.3	972	Gcc/cc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0024525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	52	600	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	62	744	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	67	452	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc																																																																														
BRD4	0	MSKCC	GRCh37	19	15353740	15353740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	69	973	1	ENST00000263377.2:c.3140G>A	p.Arg1047Gln	p.R1047Q	ENST00000263377	NM_058243.2	1047	cGg/cAg																																																																														
RHOA	0	MSKCC	GRCh37	3	49405942	49405942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024525-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	40	762	0	ENST00000418115.1:c.196T>A	p.Tyr66Asn	p.Y66N	ENST00000418115	NM_001664.2	66	Tat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	100	635	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	275	711	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	140	477	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	271	654	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	271	654	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	271	654	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245558	41245558	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	214	840	0	ENST00000357654.3:c.1990A>G	p.Arg664Gly	p.R664G	ENST00000357654	NM_007294.3	664	Aga/Gga																																																																														
PBRM1	0	MSKCC	GRCh37	3	52588896	52588896	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0024590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	173	472	0	ENST00000394830.3:c.4133-1G>A		p.X1378_splice	ENST00000394830	NM_018313.4	1378																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	306	633	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0024591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	200	846	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
ERCC5	0	MSKCC	GRCh37	13	103528056	103528056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	87	379	0	ENST00000355739.4:c.3364C>G	p.Pro1122Ala	p.P1122A	ENST00000355739	NM_000123.3	1122	Cca/Gca																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604739	48604739	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	60	429	0	ENST00000342988.3:c.1561A>C	p.Thr521Pro	p.T521P	ENST00000342988	NM_005359.5	521	Aca/Cca																																																																														
BAP1	0	MSKCC	GRCh37	3	52436393	52436393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	212	550	4	ENST00000460680.1:c.2101C>T	p.Arg701Cys	p.R701C	ENST00000460680	NM_004656.3	701	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087346	27087346	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0024594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	16	396	0	ENST00000324856.7:c.1921-1G>A		p.X641_splice	ENST00000324856	NM_006015.4	641																																																																															
SETD2	0	MSKCC	GRCh37	3	47103808	47103809	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0024594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	30	569	2	ENST00000409792.3:c.6137_6138delinsTT	p.Gly2046Val	p.G2046V	ENST00000409792	NM_014159.6	2046	gGC/gTT																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27840029	27840029	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	41	384	1	ENST00000328488.2:c.65C>A	p.Ala22Asp	p.A22D	ENST00000328488	NM_003533.2	22	gCc/gAc																																																																														
BTK	0	MSKCC	GRCh37	X	100624994	100624994	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	16	535	0	ENST00000308731.7:c.383T>G	p.Leu128Arg	p.L128R	ENST00000308731	NM_000061.2	128	cTc/cGc																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	450	768	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
JAK1	0	MSKCC	GRCh37	1	65309787	65309787	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024595-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	200	726	0	ENST00000342505.4:c.2363A>G	p.Tyr788Cys	p.Y788C	ENST00000342505	NM_002227.2	788	tAc/tGc																																																																														
APC	0	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	78	275	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																														
CDK12	0	MSKCC	GRCh37	17	37627224	37627224	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200075664		P-0024597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	133	685	2	ENST00000447079.4:c.1139G>A	p.Arg380His	p.R380H	ENST00000447079	NM_015083.1	380	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577519	7577527	+	inframe_deletion	In_Frame_Del	DEL	GATGGTGAG	GATGGTGAG	-			P-0024597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	163	864	1	ENST00000269305.4:c.754_762del	p.Leu252_Ile254del	p.L252_I254del	ENST00000269305	NM_001126112.2	252	CTCACCATC/-																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589589	67589590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0024597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	172	433	0	ENST00000274335.5:c.1356_1357dup	p.Asn453IlefsTer28	p.N453Ifs*28	ENST00000274335		451	gaa/gaATa																																																																														
PREX2	0	MSKCC	GRCh37	8	69104610	69104610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	121	863	0	ENST00000288368.4:c.4454T>A	p.Leu1485Gln	p.L1485Q	ENST00000288368	NM_024870.2	1485	cTg/cAg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	85	453	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																																																														
TP53	0	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	147	765	0	ENST00000269305.4:c.395A>T	p.Lys132Met	p.K132M	ENST00000269305	NM_001126112.2	132	aAg/aTg																																																																														
RAD54L	0	MSKCC	GRCh37	1	46736340	46736340	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	43	429	0	ENST00000371975.4:c.1052A>G	p.His351Arg	p.H351R	ENST00000371975	NM_003579.3	351	cAt/cGt																																																																														
PRKD1	0	MSKCC	GRCh37	14	30093408	30093408	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	21	582	0	ENST00000331968.5:c.1855T>A	p.Phe619Ile	p.F619I	ENST00000331968	NM_002742.2	619	Ttt/Att																																																																														
CUL3	0	MSKCC	GRCh37	2	225378335	225378335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	48	293	0	ENST00000264414.4:c.560G>A	p.Cys187Tyr	p.C187Y	ENST00000264414	NM_003590.4	187	tGc/tAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	359	793	3	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
B2M	0	MSKCC	GRCh37	15	45003746	45003746	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	124	537	0	ENST00000558401.1:c.2T>C	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	aTg/aCg																																																																														
FGFR1	0	MSKCC	GRCh37	8	38287386	38287386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	129	667	1	ENST00000425967.3:c.271C>T	p.Arg91Trp	p.R91W	ENST00000425967	NM_001174067.1	91	Cgg/Tgg																																																																														
PTEN	0	MSKCC	GRCh37	10	89685269	89685269	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	164	347	1	ENST00000371953.3:c.165-1G>T		p.X55_splice	ENST00000371953	NM_000314.4	55																																																																															
RB1	0	MSKCC	GRCh37	13	48951052	48951052	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	120	226	0	ENST00000267163.4:c.1216-2A>G		p.X406_splice	ENST00000267163	NM_000321.2	406																																																																															
KMT2D	0	MSKCC	GRCh37	12	49448529	49448529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	548	519	1	ENST00000301067.7:c.182del	p.Gly61ValfsTer69	p.G61Vfs*69	ENST00000301067	NM_003482.3	61	gGt/gt																																																																														
CSF3R	0	MSKCC	GRCh37	1	36939102	36939102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	61	935	0	ENST00000361632.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000361632		203	Gtg/Ttg																																																																														
RAD52	0	MSKCC	GRCh37	12	1022568	1022568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	290	740	0	ENST00000358495.3:c.1246G>C	p.Asp416His	p.D416H	ENST00000358495	NM_134424.2	416	Gat/Cat																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18658296	18658296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	37	606	0	ENST00000266497.5:c.3101G>C	p.Arg1034Pro	p.R1034P	ENST00000266497		1034	cGt/cCt																																																																														
ATR	0	MSKCC	GRCh37	3	142281074	142281074	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	143	350	0	ENST00000350721.4:c.1170G>C	p.Glu390Asp	p.E390D	ENST00000350721	NM_001184.3	390	gaG/gaC																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127521	55127521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	117	454	0	ENST00000257290.5:c.309C>A	p.Asn103Lys	p.N103K	ENST00000257290	NM_006206.4	103	aaC/aaA																																																																														
DROSHA	0	MSKCC	GRCh37	5	31435916	31435916	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	233	555	0	ENST00000344624.3:c.2998C>G	p.Arg1000Gly	p.R1000G	ENST00000344624		1000	Cgg/Ggg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31437371	31437371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	629	854	1	ENST00000344624.3:c.2917G>T	p.Asp973Tyr	p.D973Y	ENST00000344624		973	Gat/Tat																																																																														
SMO	0	MSKCC	GRCh37	7	128850913	128850913	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	140	765	0	ENST00000249373.3:c.1760T>C	p.Leu587Pro	p.L587P	ENST00000249373	NM_005631.4	587	cTg/cCg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151949144	151949144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	111	594	0	ENST00000262189.6:c.1501G>T	p.Asp501Tyr	p.D501Y	ENST00000262189	NM_170606.2	501	Gat/Tat																																																																														
KLF4	0	MSKCC	GRCh37	9	110249458	110249458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	490	1101	0	ENST00000374672.4:c.1115G>C	p.Gly372Ala	p.G372A	ENST00000374672	NM_004235.4	372	gGt/gCt																																																																														
MED12	0	MSKCC	GRCh37	X	70344188	70344188	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	92	506	0	ENST00000374080.3:c.1924G>C	p.Asp642His	p.D642H	ENST00000374080		642	Gat/Cat																																																																														
ATRX	0	MSKCC	GRCh37	X	76939537	76939537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	273	687	0	ENST00000373344.5:c.1211A>G	p.Lys404Arg	p.K404R	ENST00000373344	NM_000489.3	404	aAg/aGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	116	633	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PTPN11	0	MSKCC	GRCh37	12	112891030	112891030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	30	383	0	ENST00000351677.2:c.364G>A	p.Ala122Thr	p.A122T	ENST00000351677	NM_002834.3	122	Gca/Aca																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	87	625	1	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
GATA1	0	MSKCC	GRCh37	X	48652358	48652358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	97	414	0	ENST00000376670.3:c.1029C>A	p.Ser343Arg	p.S343R	ENST00000376670	NM_002049.3	343	agC/agA																																																																														
RBM10	0	MSKCC	GRCh37	X	47034471	47034471	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	138	383	0	ENST00000329236.7:c.325C>T	p.Arg109Ter	p.R109*	ENST00000329236	NM_001204466.1	109	Cga/Tga																																																																														
FGF3	0	MSKCC	GRCh37	11	69625141	69625141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	136	725	2	ENST00000334134.2:c.652G>T	p.Asp218Tyr	p.D218Y	ENST00000334134	NM_005247.2	218	Gat/Tat																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944908	31944908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	43	311	0	ENST00000340398.3:c.193C>A	p.Leu65Met	p.L65M	ENST00000340398	NM_001013699.2	65	Ctg/Atg																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50488327	50488327	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	54	554	0	ENST00000394963.4:c.1241A>T	p.Gln414Leu	p.Q414L	ENST00000394963	NM_003076.4	414	cAa/cTa																																																																														
MGA	0	MSKCC	GRCh37	15	41999982	41999982	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	82	811	1	ENST00000219905.7:c.2245G>T	p.Gly749Ter	p.G749*	ENST00000219905	NM_001164273.1	749	Gga/Tga																																																																														
SOX9	0	MSKCC	GRCh37	17	70118958	70118958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	88	755	0	ENST00000245479.2:c.530G>A	p.Arg177Gln	p.R177Q	ENST00000245479	NM_000346.3	177	cGg/cAg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715976	52715976	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	107	552	0	ENST00000322088.6:c.541G>T	p.Val181Leu	p.V181L	ENST00000322088	NM_014225.5	181	Gtg/Ttg																																																																														
ATR	0	MSKCC	GRCh37	3	142177822	142177822	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	37	306	0	ENST00000350721.4:c.7481A>T	p.Asp2494Val	p.D2494V	ENST00000350721	NM_001184.3	2494	gAt/gTt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127352	55127352	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	63	548	0	ENST00000257290.5:c.140T>A	p.Leu47Gln	p.L47Q	ENST00000257290	NM_006206.4	47	cTg/cAg																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137528155	137528155	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	16	318	0	ENST00000367739.4:c.145G>T	p.Glu49Ter	p.E49*	ENST00000367739	NM_000416.2	49	Gag/Tag																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128321967	128321967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	113	629	1	ENST00000265960.3:c.793G>T	p.Val265Phe	p.V265F	ENST00000265960	NM_001006617.1	265	Gtt/Ttt																																																																														
TSC1	0	MSKCC	GRCh37	9	135798846	135798847	+	missense_variant	Missense_Mutation	DNP	CG	CG	AT			P-0024636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	18	264	0	ENST00000298552.3:c.396_397delinsAT	p.Val133Phe	p.V133F	ENST00000298552	NM_001162426.1	132	ggCGtc/ggATtc																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074238	8074238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	261	398	0	ENST00000377482.5:c.421C>T	p.Pro141Ser	p.P141S	ENST00000377482	NM_018948.3	141	Ccc/Tcc																																																																														
SPEN	0	MSKCC	GRCh37	1	16254692	16254692	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	70	512	0	ENST00000375759.3:c.1957C>T	p.Arg653Ter	p.R653*	ENST00000375759	NM_015001.2	653	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099361	27099361	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	62	581	0	ENST00000324856.7:c.3598C>T	p.Gln1200Ter	p.Q1200*	ENST00000324856	NM_006015.4	1200	Cag/Tag																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932277	36932277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	42	647	0	ENST00000361632.4:c.2192G>A	p.Gly731Glu	p.G731E	ENST00000361632		731	gGg/gAg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36941175	36941175	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	229	635	0	ENST00000361632.4:c.164T>G	p.Leu55Arg	p.L55R	ENST00000361632		55	cTg/cGg																																																																														
JAK1	0	MSKCC	GRCh37	1	65311270	65311270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	163	444	0	ENST00000342505.4:c.2041C>T	p.Arg681Trp	p.R681W	ENST00000342505	NM_002227.2	681	Cgg/Tgg																																																																														
CSDE1	0	MSKCC	GRCh37	1	115273131	115273131	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	209	433	0	ENST00000438362.2:c.1327C>T	p.Pro443Ser	p.P443S	ENST00000438362	NM_001242891.1	443	Cct/Tct																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458306	120458306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	56	509	1	ENST00000256646.2:c.7039C>T	p.Arg2347Cys	p.R2347C	ENST00000256646	NM_024408.3	2347	Cgt/Tgt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120508139	120508139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	144	379	0	ENST00000256646.2:c.1618C>T	p.Pro540Ser	p.P540S	ENST00000256646	NM_024408.3	540	Ccg/Tcg																																																																														
PARP1	0	MSKCC	GRCh37	1	226549761	226549761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	38	406	0	ENST00000366794.5:c.2872C>T	p.Pro958Ser	p.P958S	ENST00000366794	NM_001618.3	958	Cct/Tct																																																																														
PARP1	0	MSKCC	GRCh37	1	226570806	226570806	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	117	523	0	ENST00000366794.5:c.1090T>A	p.Ser364Thr	p.S364T	ENST00000366794	NM_001618.3	364	Tcc/Acc																																																																														
FH	0	MSKCC	GRCh37	1	241665806	241665806	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	59	436	0	ENST00000366560.3:c.1173T>G	p.His391Gln	p.H391Q	ENST00000366560	NM_000143.3	391	caT/caG																																																																														
TET1	0	MSKCC	GRCh37	10	70406195	70406195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	89	556	0	ENST00000373644.4:c.3709C>T	p.Pro1237Ser	p.P1237S	ENST00000373644	NM_030625.2	1237	Cca/Tca																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88672134	88672134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	76	650	1	ENST00000372037.3:c.668C>T	p.Pro223Leu	p.P223L	ENST00000372037	NM_004329.2	223	cCt/cTt																																																																														
FGF19	0	MSKCC	GRCh37	11	69518527	69518527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	80	599	2	ENST00000294312.3:c.118G>A	p.Asp40Asn	p.D40N	ENST00000294312	NM_005117.2	40	Gac/Aac																																																																														
PAK1	0	MSKCC	GRCh37	11	77103408	77103408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	75	377	0	ENST00000356341.3:c.158G>A	p.Arg53Gln	p.R53Q	ENST00000356341	NM_002576.4	53	cGa/cAa																																																																														
PGR	0	MSKCC	GRCh37	11	100912815	100912815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	67	365	0	ENST00000325455.5:c.2507G>A	p.Arg836Gln	p.R836Q	ENST00000325455	NM_001202474.3	836	cGa/cAa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118362480	118362480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	80	318	0	ENST00000534358.1:c.4841C>T	p.Ser1614Phe	p.S1614F	ENST00000534358	NM_005933.3	1614	tCt/tTt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18466999	18466999	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	58	315	1	ENST00000266497.5:c.1137+1G>A		p.X379_splice	ENST00000266497		379																																																																															
PIK3C2G	0	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	52	469	0	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18715746	18715746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	73	384	0	ENST00000266497.5:c.3577C>T	p.Pro1193Ser	p.P1193S	ENST00000266497		1193	Cct/Tct																																																																														
ARID2	0	MSKCC	GRCh37	12	46205281	46205285	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCT	TTCCT	-			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	69	451	0	ENST00000334344.6:c.365_369del	p.Leu122HisfsTer30	p.L122Hfs*30	ENST00000334344	NM_152641.2	122	cTTCCT/c																																																																														
ARID2	0	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	105	430	1	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga																																																																														
ARID2	0	MSKCC	GRCh37	12	46231364	46231364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	98	435	0	ENST00000334344.6:c.1204G>A	p.Glu402Lys	p.E402K	ENST00000334344	NM_152641.2	402	Gag/Aag																																																																														
ARID2	0	MSKCC	GRCh37	12	46244859	46244859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	129	636	0	ENST00000334344.6:c.2953C>T	p.Pro985Ser	p.P985S	ENST00000334344	NM_152641.2	985	Cct/Tct																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444789	49444789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	135	754	0	ENST00000301067.7:c.2677C>T	p.Pro893Ser	p.P893S	ENST00000301067	NM_003482.3	893	Ccc/Tcc																																																																														
GLI1	0	MSKCC	GRCh37	12	57864354	57864354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	92	611	0	ENST00000228682.2:c.1831C>T	p.Arg611Trp	p.R611W	ENST00000228682	NM_005269.2	611	Cgg/Tgg																																																																														
IGF1	0	MSKCC	GRCh37	12	102811603	102811603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	95	528	1	ENST00000307046.8:c.581G>A	p.Gly194Glu	p.G194E	ENST00000307046	NM_001111285.1	194	gGa/gAa																																																																														
LATS2	0	MSKCC	GRCh37	13	21557600	21557600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	204	590	0	ENST00000382592.4:c.2245C>T	p.Pro749Ser	p.P749S	ENST00000382592	NM_014572.2	749	Cct/Tct																																																																														
CDK8	0	MSKCC	GRCh37	13	26923215	26923215	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	89	299	1	ENST00000381527.3:c.211C>T	p.Arg71Ter	p.R71*	ENST00000381527	NM_001260.1	71	Cga/Tga																																																																														
FLT3	0	MSKCC	GRCh37	13	28610099	28610099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	127	439	0	ENST00000241453.7:c.1391G>A	p.Trp464Ter	p.W464*	ENST00000241453	NM_004119.2	464	tGg/tAg																																																																														
FLT1	0	MSKCC	GRCh37	13	28919581	28919581	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	131	491	0	ENST00000282397.4:c.2355+1G>A		p.X785_splice	ENST00000282397	NM_002019.4	785																																																																															
BRCA2	0	MSKCC	GRCh37	13	32954183	32954183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	120	560	0	ENST00000380152.3:c.9157G>A	p.Glu3053Lys	p.E3053K	ENST00000380152		3053	Gag/Aag																																																																														
DIS3	0	MSKCC	GRCh37	13	73335890	73335890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	99	422	0	ENST00000377767.4:c.2405C>T	p.Pro802Leu	p.P802L	ENST00000377767	NM_014953.3	802	cCa/cTa																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873846	35873846	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	24	200	0	ENST00000216797.5:c.5T>C	p.Phe2Ser	p.F2S	ENST00000216797	NM_020529.2	2	tTc/tCc																																																																														
DICER1	0	MSKCC	GRCh37	14	95562962	95562962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	133	392	0	ENST00000343455.3:c.4295C>T	p.Pro1432Leu	p.P1432L	ENST00000343455	NM_177438.2	1432	cCg/cTg																																																																														
DICER1	0	MSKCC	GRCh37	14	95582103	95582103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	106	337	0	ENST00000343455.3:c.1808C>T	p.Pro603Leu	p.P603L	ENST00000343455	NM_177438.2	603	cCt/cTt																																																																														
DICER1	0	MSKCC	GRCh37	14	95592936	95592936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	106	489	0	ENST00000343455.3:c.884C>T	p.Ser295Phe	p.S295F	ENST00000343455	NM_177438.2	295	tCt/tTt																																																																														
MGA	0	MSKCC	GRCh37	15	42041623	42041623	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	107	537	0	ENST00000219905.7:c.5818C>T	p.Gln1940Ter	p.Q1940*	ENST00000219905	NM_001164273.1	1940	Cag/Tag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43707816	43707816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			20	172	708	0	ENST00000382044.4:c.5065C>T	p.Arg1689Cys	p.R1689C	ENST00000382044	NM_001141980.1	1689	Cgc/Tgc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43748470	43748470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	104	621	0	ENST00000382044.4:c.2336C>T	p.Pro779Leu	p.P779L	ENST00000382044	NM_001141980.1	779	cCt/cTt																																																																														
BLM	0	MSKCC	GRCh37	15	91326155	91326155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	56	295	0	ENST00000355112.3:c.2659C>T	p.Pro887Ser	p.P887S	ENST00000355112	NM_000057.2	887	Cca/Tca																																																																														
IGF1R	0	MSKCC	GRCh37	15	99500580	99500580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	89	422	0	ENST00000268035.6:c.4013C>T	p.Ala1338Val	p.A1338V	ENST00000268035	NM_000875.3	1338	gCc/gTc																																																																														
SLX4	0	MSKCC	GRCh37	16	3639164	3639164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	154	708	0	ENST00000294008.3:c.4475C>T	p.Ser1492Phe	p.S1492F	ENST00000294008	NM_032444.2	1492	tCc/tTc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821455	72821455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	54	719	1	ENST00000268489.5:c.10720C>T	p.His3574Tyr	p.H3574Y	ENST00000268489	NM_006885.3	3574	Cac/Tac																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944273	81944273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	49	601	0	ENST00000359376.3:c.1882G>A	p.Glu628Lys	p.E628K	ENST00000359376	NM_002661.3	628	Gag/Aag																																																																														
PLCG2	0	MSKCC	GRCh37	16	81973515	81973515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	51	465	1	ENST00000359376.3:c.3332C>T	p.Pro1111Leu	p.P1111L	ENST00000359376	NM_002661.3	1111	cCt/cTt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350510	89350510	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	785	784	0	ENST00000301030.4:c.2440T>A	p.Phe814Ile	p.F814I	ENST00000301030	NM_001256183.1	814	Ttt/Att																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89352034	89352034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	608	666	1	ENST00000301030.4:c.916C>T	p.Pro306Ser	p.P306S	ENST00000301030	NM_001256183.1	306	Cca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7576897	7576898	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	118	573	1	ENST00000269305.4:c.948_949delinsAT	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	316	ccCCag/ccATag																																																																														
TP53	0	MSKCC	GRCh37	17	7578278	7578278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			9	154	531	1	ENST00000269305.4:c.571C>T	p.Pro191Ser	p.P191S	ENST00000269305	NM_001126112.2	191	Cct/Tct																																																																														
AURKB	0	MSKCC	GRCh37	17	8110660	8110660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	135	520	0	ENST00000585124.1:c.232G>A	p.Glu78Lys	p.E78K	ENST00000585124	NM_004217.3	78	Gag/Aag																																																																														
NF1	0	MSKCC	GRCh37	17	29546134	29546134	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	61	338	0	ENST00000358273.4:c.1639G>A	p.Glu547Lys	p.E547K	ENST00000358273	NM_001042492.2	547	Gag/Aag																																																																														
NF1	0	MSKCC	GRCh37	17	29684368	29684368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	65	463	0	ENST00000358273.4:c.7951C>T	p.Pro2651Ser	p.P2651S	ENST00000358273	NM_001042492.2	2651	Ccc/Tcc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37863342	37863342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	145	680	1	ENST00000269571.5:c.173G>A	p.Gly58Glu	p.G58E	ENST00000269571		58	gGa/gAa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37864748	37864749	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	97	493	1	ENST00000269571.5:c.400_401delinsTT	p.Pro134Leu	p.P134L	ENST00000269571		134	CCa/TTa																																																																														
STAT3	0	MSKCC	GRCh37	17	40489466	40489466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	79	483	0	ENST00000264657.5:c.784C>T	p.Arg262Trp	p.R262W	ENST00000264657	NM_139276.2	262	Cgg/Tgg																																																																														
RNF43	0	MSKCC	GRCh37	17	56436016	56436025	+	frameshift_variant	Frame_Shift_Del	DEL	GGACCAGGTC	GGACCAGGTC	-			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	85	341	0	ENST00000407977.2:c.1112_1121del	p.Arg371ProfsTer45	p.R371Pfs*45	ENST00000407977		371	cGACCTGGTCCc/cc																																																																														
H3F3B	0	MSKCC	GRCh37	17	73775164	73775164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	133	576	0	ENST00000254810.4:c.92C>T	p.Pro31Leu	p.P31L	ENST00000254810	NM_005324.3	31	cCc/cTc																																																																														
MALT1	0	MSKCC	GRCh37	18	56400676	56400676	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7	92	332	0	ENST00000348428.3:c.1270T>C	p.Phe424Leu	p.F424L	ENST00000348428	NM_006785.3	424	Ttc/Ctc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222259	2222259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	106	728	0	ENST00000398665.3:c.3091G>A	p.Asp1031Asn	p.D1031N	ENST00000398665	NM_032482.2	1031	Gat/Aat																																																																														
GNA11	0	MSKCC	GRCh37	19	3110197	3110197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	92	706	1	ENST00000078429.4:c.187C>T	p.His63Tyr	p.H63Y	ENST00000078429	NM_002067.2	63	Cac/Tac																																																																														
INSR	0	MSKCC	GRCh37	19	7122780	7122780	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	81	522	1	ENST00000302850.5:c.3374A>T	p.Asn1125Ile	p.N1125I	ENST00000302850	NM_000208.2	1125	aAt/aTt																																																																														
INSR	0	MSKCC	GRCh37	19	7142914	7142914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	119	661	0	ENST00000302850.5:c.2455C>T	p.Arg819Cys	p.R819C	ENST00000302850	NM_000208.2	819	Cgc/Tgc																																																																														
INSR	0	MSKCC	GRCh37	19	7152846	7152846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	120	637	1	ENST00000302850.5:c.2122G>A	p.Glu708Lys	p.E708K	ENST00000302850	NM_000208.2	708	Gaa/Aaa																																																																														
INSR	0	MSKCC	GRCh37	19	7166215	7166215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	86	635	0	ENST00000302850.5:c.1811G>A	p.Arg604Gln	p.R604Q	ENST00000302850	NM_000208.2	604	cGg/cAg																																																																														
INSR	0	MSKCC	GRCh37	19	7267533	7267533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	120	544	0	ENST00000302850.5:c.475G>A	p.Asp159Asn	p.D159N	ENST00000302850	NM_000208.2	159	Gac/Aac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11096985	11096985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	95	702	1	ENST00000344626.4:c.476C>T	p.Pro159Leu	p.P159L	ENST00000344626	NM_003072.3	159	cCc/cTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271983	15271984	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	63	599	1	ENST00000263388.2:c.6455_6456delinsTT	p.Pro2152Leu	p.P2152L	ENST00000263388	NM_000435.2	2152	cCC/cTT																																																																														
JAK3	0	MSKCC	GRCh37	19	17940945	17940945	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	132	744	0	ENST00000458235.1:c.3179T>A	p.Leu1060Gln	p.L1060Q	ENST00000458235	NM_000215.3	1060	cTg/cAg																																																																														
UPF1	0	MSKCC	GRCh37	19	18968295	18968295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	94	702	0	ENST00000262803.5:c.2135C>T	p.Pro712Leu	p.P712L	ENST00000262803	NM_002911.3	712	cCa/cTa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36215892	36215892	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	117	669	0	ENST00000222270.7:c.3432T>G	p.Asp1144Glu	p.D1144E	ENST00000222270	NM_014727.1	1144	gaT/gaG																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223545	36223545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	116	770	0	ENST00000222270.7:c.6095C>A	p.Ser2032Tyr	p.S2032Y	ENST00000222270	NM_014727.1	2032	tCc/tAc																																																																														
AKT2	0	MSKCC	GRCh37	19	40743950	40743951	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	107	616	1	ENST00000392038.2:c.756_757delinsTT	p.Arg253Trp	p.R253W	ENST00000392038	NM_001626.4	252	gcCCgg/gcTTgg																																																																														
AXL	0	MSKCC	GRCh37	19	41737103	41737103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	90	711	0	ENST00000301178.4:c.683C>T	p.Pro228Leu	p.P228L	ENST00000301178	NM_021913.4	228	cCc/cTc																																																																														
ALK	0	MSKCC	GRCh37	2	29432710	29432710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	142	478	0	ENST00000389048.3:c.3778C>T	p.Pro1260Ser	p.P1260S	ENST00000389048	NM_004304.4	1260	Cca/Tca																																																																														
ALK	0	MSKCC	GRCh37	2	29519835	29519835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	164	586	0	ENST00000389048.3:c.1736G>A	p.Arg579Lys	p.R579K	ENST00000389048	NM_004304.4	579	aGg/aAg																																																																														
ALK	0	MSKCC	GRCh37	2	29606708	29606708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	95	490	0	ENST00000389048.3:c.1172G>A	p.Gly391Glu	p.G391E	ENST00000389048	NM_004304.4	391	gGa/gAa																																																																														
ALK	0	MSKCC	GRCh37	2	29754974	29754974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	144	489	1	ENST00000389048.3:c.961C>T	p.Leu321Phe	p.L321F	ENST00000389048	NM_004304.4	321	Ctc/Ttc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46607715	46607715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	186	647	0	ENST00000263734.3:c.1904C>T	p.Ser635Phe	p.S635F	ENST00000263734	NM_001430.4	635	tCc/tTc																																																																														
IDH1	0	MSKCC	GRCh37	2	209108164	209108164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	56	390	0	ENST00000345146.2:c.685G>A	p.Glu229Lys	p.E229K	ENST00000345146	NM_005896.2	229	Gag/Aag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566827	212566827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	42	292	0	ENST00000342788.4:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000342788	NM_005235.2	452	Gaa/Aaa																																																																														
IRS1	0	MSKCC	GRCh37	2	227660096	227660097	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	86	527	2	ENST00000305123.5:c.3358_3359delinsAA	p.Gly1120Lys	p.G1120K	ENST00000305123	NM_005544.2	1120	GGa/AAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	105	456	0	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																																																														
PAK7	0	MSKCC	GRCh37	20	9561547	9561547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4	93	499	0	ENST00000353224.5:c.235G>A	p.Glu79Lys	p.E79K	ENST00000353224	NM_177990.2	79	Gaa/Aaa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024321	31024321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	91	423	0	ENST00000375687.4:c.3806C>T	p.Ser1269Leu	p.S1269L	ENST00000375687	NM_015338.5	1269	tCg/tTg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024707	31024707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	102	491	0	ENST00000375687.4:c.4192C>T	p.His1398Tyr	p.H1398Y	ENST00000375687	NM_015338.5	1398	Cac/Tac																																																																														
SRC	0	MSKCC	GRCh37	20	36030892	36030892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	110	583	3	ENST00000358208.4:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000358208		391	Cgt/Tgt																																																																														
TOP1	0	MSKCC	GRCh37	20	39729953	39729953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	88	458	0	ENST00000361337.2:c.1268C>T	p.Ser423Phe	p.S423F	ENST00000361337	NM_003286.2	423	tCc/tTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827982	40827982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	90	450	0	ENST00000373198.4:c.2446G>A	p.Glu816Lys	p.E816K	ENST00000373198	NM_133170.3	816	Gag/Aag																																																																														
RAC2	0	MSKCC	GRCh37	22	37628882	37628882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	351	726	1	ENST00000249071.6:c.184G>A	p.Glu62Lys	p.E62K	ENST00000249071	NM_002872.4	62	Gag/Aag																																																																														
EP300	0	MSKCC	GRCh37	22	41543890	41543891	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	348	579	2	ENST00000263253.7:c.2181_2182delinsTT	p.Arg728Trp	p.R728W	ENST00000263253	NM_001429.3	727	ccCCgg/ccTTgg																																																																														
EP300	0	MSKCC	GRCh37	22	41554473	41554473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	250	498	0	ENST00000263253.7:c.3559C>T	p.Arg1187Cys	p.R1187C	ENST00000263253	NM_001429.3	1187	Cgt/Tgt																																																																														
SETD2	0	MSKCC	GRCh37	3	47163704	47163704	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	73	392	0	ENST00000409792.3:c.2422G>T	p.Glu808Ter	p.E808*	ENST00000409792	NM_014159.6	808	Gaa/Taa																																																																														
SETD2	0	MSKCC	GRCh37	3	47164001	47164001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	56	305	0	ENST00000409792.3:c.2125C>T	p.Pro709Ser	p.P709S	ENST00000409792	NM_014159.6	709	Cct/Tct																																																																														
FOXP1	0	MSKCC	GRCh37	3	71037222	71037222	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	63	330	0	ENST00000318789.4:c.1069A>G	p.Lys357Glu	p.K357E	ENST00000318789	NM_032682.5	357	Aaa/Gaa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89499393	89499393	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	120	446	1	ENST00000336596.2:c.2563C>T	p.Gln855Ter	p.Q855*	ENST00000336596	NM_005233.5	855	Cag/Tag																																																																														
GATA2	0	MSKCC	GRCh37	3	128199867	128199867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	60	315	0	ENST00000341105.2:c.1438G>A	p.Gly480Ser	p.G480S	ENST00000341105	NM_032638.4	480	Ggc/Agc																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664763	138664763	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	10	354	0	ENST00000330315.3:c.802C>G	p.Pro268Ala	p.P268A	ENST00000330315	NM_023067.3	268	Ccc/Gcc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952025	178952026	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	53	391	1	ENST00000263967.3:c.3080_3081delinsTT	p.Ala1027Val	p.A1027V	ENST00000263967	NM_006218.2	1027	gCC/gTT																																																																														
SOX2	0	MSKCC	GRCh37	3	181430393	181430393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	82	647	0	ENST00000325404.1:c.245T>C	p.Leu82Ser	p.L82S	ENST00000325404	NM_003106.3	82	tTg/tCg																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186505652	186505652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	64	311	0	ENST00000323963.5:c.1060C>T	p.Arg354Cys	p.R354C	ENST00000323963		354	Cgt/Tgt																																																																														
TP63	0	MSKCC	GRCh37	3	189608604	189608604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	128	592	0	ENST00000264731.3:c.1679C>T	p.Ser560Leu	p.S560L	ENST00000264731	NM_003722.4	560	tCa/tTa																																																																														
TP63	0	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	103	561	1	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55151594	55151594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	52	682	0	ENST00000257290.5:c.2380G>A	p.Asp794Asn	p.D794N	ENST00000257290	NM_006206.4	794	Gat/Aat																																																																														
KDR	0	MSKCC	GRCh37	4	55948196	55948196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	39	547	0	ENST00000263923.4:c.3775G>A	p.Asp1259Asn	p.D1259N	ENST00000263923	NM_002253.2	1259	Gac/Aac																																																																														
KDR	0	MSKCC	GRCh37	4	55958827	55958827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	53	498	0	ENST00000263923.4:c.3026G>A	p.Ser1009Asn	p.S1009N	ENST00000263923	NM_002253.2	1009	aGc/aAc																																																																														
KDR	0	MSKCC	GRCh37	4	55970987	55970987	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	86	511	1	ENST00000263923.4:c.1810A>T	p.Lys604Ter	p.K604*	ENST00000263923	NM_002253.2	604	Aag/Tag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66286254	66286254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	64	387	1	ENST00000273854.3:c.1432G>A	p.Gly478Arg	p.G478R	ENST00000273854	NM_004439.5	478	Ggg/Agg																																																																														
TET2	0	MSKCC	GRCh37	4	106193980	106193981	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	45	223	0	ENST00000380013.4:c.4442_4443delinsTT	p.Ser1481Phe	p.S1481F	ENST00000380013	NM_001127208.2	1481	tCC/tTT																																																																														
TERT	0	MSKCC	GRCh37	5	1293635	1293635	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	102	772	0	ENST00000310581.5:c.1366A>C	p.Ser456Arg	p.S456R	ENST00000310581	NM_198253.2	456	Agc/Cgc																																																																														
TERT	0	MSKCC	GRCh37	5	1294917	1294917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			9	13	97	0	ENST00000310581.5:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000310581	NM_198253.2	63	cGg/cAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	59	414	0				ENST00000310581	NM_198253.2																																																																																
IL7R	0	MSKCC	GRCh37	5	35876210	35876210	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	89	445	0	ENST00000303115.3:c.1002A>T	p.Glu334Asp	p.E334D	ENST00000303115	NM_002185.3	334	gaA/gaT																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950498	38950498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	86	402	0	ENST00000357387.3:c.3452C>T	p.Ser1151Phe	p.S1151F	ENST00000357387	NM_152756.3	1151	tCc/tTc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111638	56111638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	11	359	2	ENST00000399503.3:c.238C>T	p.Leu80Phe	p.L80F	ENST00000399503	NM_005921.1	80	Ctt/Ttt																																																																														
FLT4	0	MSKCC	GRCh37	5	180047254	180047254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	40	736	0	ENST00000261937.6:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000261937	NM_182925.4	821	Gag/Aag																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045756	26045756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	78	364	1	ENST00000540144.1:c.118C>T	p.His40Tyr	p.H40Y	ENST00000540144	NM_003531.2	40	Cat/Tat																																																																														
MDC1	0	MSKCC	GRCh37	6	30673656	30673656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	126	632	0	ENST00000376406.3:c.3304C>T	p.His1102Tyr	p.H1102Y	ENST00000376406	NM_014641.2	1102	Cac/Tac																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169941	32169941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	144	741	0	ENST00000375023.3:c.3667C>T	p.Leu1223Phe	p.L1223F	ENST00000375023	NM_004557.3	1223	Ctc/Ttc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188836	32188836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	108	592	1	ENST00000375023.3:c.718C>T	p.Pro240Ser	p.P240S	ENST00000375023	NM_004557.3	240	Cct/Tct																																																																														
DAXX	0	MSKCC	GRCh37	6	33289058	33289058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	122	672	0	ENST00000374542.5:c.494C>T	p.Ser165Phe	p.S165F	ENST00000374542	NM_001141970.1	165	tCc/tTc																																																																														
CCND3	0	MSKCC	GRCh37	6	41905131	41905131	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	67	313	0	ENST00000372991.4:c.416A>C	p.Asp139Ala	p.D139A	ENST00000372991	NM_001760.3	139	gAc/gCc																																																																														
VEGFA	0	MSKCC	GRCh37	6	43748519	43748519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	99	418	0	ENST00000523873.1:c.473C>T	p.Ser158Phe	p.S158F	ENST00000523873		158	tCc/tTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956681	93956681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	83	374	0	ENST00000369303.4:c.2555G>A	p.Gly852Asp	p.G852D	ENST00000369303	NM_004440.3	852	gGt/gAt																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982137	93982137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	73	328	1	ENST00000369303.4:c.1328C>T	p.Pro443Leu	p.P443L	ENST00000369303	NM_004440.3	443	cCc/cTc																																																																														
FYN	0	MSKCC	GRCh37	6	112041041	112041041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	96	379	0	ENST00000368678.4:c.214C>T	p.His72Tyr	p.H72Y	ENST00000368678		72	Cat/Tat																																																																														
ROS1	0	MSKCC	GRCh37	6	117662320	117662320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	107	553	0	ENST00000368508.3:c.5057G>A	p.Arg1686Lys	p.R1686K	ENST00000368508	NM_002944.2	1686	aGa/aAa																																																																														
ROS1	0	MSKCC	GRCh37	6	117674227	117674227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	96	638	1	ENST00000368508.3:c.4247C>T	p.Ala1416Val	p.A1416V	ENST00000368508	NM_002944.2	1416	gCc/gTc																																																																														
ROS1	0	MSKCC	GRCh37	6	117724419	117724419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	87	463	0	ENST00000368508.3:c.460G>A	p.Val154Met	p.V154M	ENST00000368508	NM_002944.2	154	Gtg/Atg																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138192564	138192564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	76	362	0	ENST00000237289.4:c.200C>T	p.Ala67Val	p.A67V	ENST00000237289	NM_001270507.1	67	gCc/gTc																																																																														
LATS1	0	MSKCC	GRCh37	6	149997433	149997434	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	95	609	0	ENST00000253339.5:c.2845_2846delinsTT	p.Pro949Phe	p.P949F	ENST00000253339		949	CCt/TTt																																																																														
ESR1	0	MSKCC	GRCh37	6	152129244	152129244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	85	537	0	ENST00000206249.3:c.197C>T	p.Ala66Val	p.A66V	ENST00000206249	NM_000125.3	66	gCc/gTc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522147	157522148	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AT			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	78	433	2	ENST00000346085.5:c.4419_4420delinsAT	p.Tyr1473_Pro1474delinsTer	p.Y1473_P1474delins*	ENST00000346085	NM_020732.3	1473	taTCcc/taATcc																																																																														
PARK2	0	MSKCC	GRCh37	6	161990398	161990398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	70	383	0	ENST00000366898.1:c.922G>A	p.Gly308Arg	p.G308R	ENST00000366898	NM_004562.2	308	Gga/Aga																																																																														
CARD11	0	MSKCC	GRCh37	7	2969682	2969682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	135	664	0	ENST00000396946.4:c.1597G>A	p.Asp533Asn	p.D533N	ENST00000396946	NM_032415.4	533	Gac/Aac																																																																														
CARD11	0	MSKCC	GRCh37	7	2976739	2976739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	154	659	0	ENST00000396946.4:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000396946	NM_032415.4	425	Gag/Aag																																																																														
CARD11	0	MSKCC	GRCh37	7	2979457	2979457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	125	638	0	ENST00000396946.4:c.790G>A	p.Glu264Lys	p.E264K	ENST00000396946	NM_032415.4	264	Gag/Aag																																																																														
INHBA	0	MSKCC	GRCh37	7	41739609	41739609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	112	554	0	ENST00000242208.4:c.364G>C	p.Glu122Gln	p.E122Q	ENST00000242208	NM_002192.2	122	Gag/Cag																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467934	50467934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	60	348	0	ENST00000331340.3:c.1169C>T	p.Pro390Leu	p.P390L	ENST00000331340	NM_006060.4	390	cCg/cTg																																																																														
HGF	0	MSKCC	GRCh37	7	81355289	81355289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	170	355	0	ENST00000222390.5:c.1085C>T	p.Ser362Leu	p.S362L	ENST00000222390	NM_000601.4	362	tCa/tTa																																																																														
SMO	0	MSKCC	GRCh37	7	128845497	128845497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	359	651	2	ENST00000249373.3:c.794T>C	p.Val265Ala	p.V265A	ENST00000249373	NM_005631.4	265	gTt/gCt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860169	151860169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	102	419	0	ENST00000262189.6:c.10493C>T	p.Thr3498Ile	p.T3498I	ENST00000262189	NM_170606.2	3498	aCc/aTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878859	151878859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	289	533	0	ENST00000262189.6:c.6086C>T	p.Pro2029Leu	p.P2029L	ENST00000262189	NM_170606.2	2029	cCc/cTc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38178630	38178630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	85	514	0	ENST00000317025.8:c.1769C>T	p.Ser590Phe	p.S590F	ENST00000317025	NM_023034.1	590	tCc/tTc																																																																														
FGFR1	0	MSKCC	GRCh37	8	38271300	38271300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	127	715	0	ENST00000425967.3:c.2408C>T	p.Pro803Leu	p.P803L	ENST00000425967	NM_001174067.1	803	cCc/cTc																																																																														
PREX2	0	MSKCC	GRCh37	8	69032459	69032459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	113	653	0	ENST00000288368.4:c.3533G>A	p.Gly1178Glu	p.G1178E	ENST00000288368	NM_024870.2	1178	gGg/gAg																																																																														
PREX2	0	MSKCC	GRCh37	8	69046342	69046342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	83	421	0	ENST00000288368.4:c.3815T>C	p.Val1272Ala	p.V1272A	ENST00000288368	NM_024870.2	1272	gTg/gCg																																																																														
PREX2	0	MSKCC	GRCh37	8	69058575	69058575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	125	680	0	ENST00000288368.4:c.4219C>T	p.Leu1407Phe	p.L1407F	ENST00000288368	NM_024870.2	1407	Ctt/Ttt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8317921	8317921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	84	391	1	ENST00000356435.5:c.5692C>T	p.Arg1898Cys	p.R1898C	ENST00000356435		1898	Cgt/Tgt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341269	8341269	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	124	280	0	ENST00000356435.5:c.4948-1G>A		p.X1650_splice	ENST00000356435		1650																																																																															
PTPRD	0	MSKCC	GRCh37	9	8341701	8341701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	353	526	1	ENST00000356435.5:c.4939G>A	p.Glu1647Lys	p.E1647K	ENST00000356435		1647	Gaa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8376071	8376071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	223	274	0	ENST00000356435.5:c.4526G>A	p.Arg1509Lys	p.R1509K	ENST00000356435		1509	aGa/aAa																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8465632	8465632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	76	445	0	ENST00000356435.5:c.3548G>A	p.Gly1183Glu	p.G1183E	ENST00000356435		1183	gGg/gAg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	75	347	0	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528641	8528641	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	329	356	0	ENST00000356435.5:c.491T>A	p.Leu164Ter	p.L164*	ENST00000356435		164	tTa/tAa																																																																														
TEK	0	MSKCC	GRCh37	9	27157993	27157993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	144	550	0	ENST00000380036.4:c.217G>A	p.Glu73Lys	p.E73K	ENST00000380036	NM_000459.3	73	Gaa/Aaa																																																																														
TEK	0	MSKCC	GRCh37	9	27183567	27183567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	310	448	0	ENST00000380036.4:c.1141G>A	p.Glu381Lys	p.E381K	ENST00000380036	NM_000459.3	381	Gaa/Aaa																																																																														
PAX5	0	MSKCC	GRCh37	9	37015115	37015115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	502	662	0	ENST00000358127.4:c.289G>A	p.Glu97Lys	p.E97K	ENST00000358127	NM_001280556.1	97	Gaa/Aaa																																																																														
SYK	0	MSKCC	GRCh37	9	93626932	93626932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	76	544	0	ENST00000375746.1:c.779A>G	p.Gln260Arg	p.Q260R	ENST00000375746	NM_001174167.1	260	cAa/cGa																																																																														
ABL1	0	MSKCC	GRCh37	9	133760621	133760621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	174	915	0	ENST00000318560.5:c.2944C>T	p.Pro982Ser	p.P982S	ENST00000318560	NM_005157.4	982	Ccc/Tcc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223740	53223740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			8	122	412	0	ENST00000375401.3:c.3619G>A	p.Asp1207Asn	p.D1207N	ENST00000375401	NM_004187.3	1207	Gac/Aac																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4	105	329	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66941720	66941720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			9	115	346	0	ENST00000374690.3:c.2364G>A	p.Met788Ile	p.M788I	ENST00000374690	NM_000044.3	788	atG/atA																																																																														
CBL	0	MSKCC	GRCh37	11	119148875	119148876	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GG	GG	A			P-0024639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	129	258	0	ENST00000264033.4:c.1096-1_1096delinsA		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	218	583	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	348	868	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	37	368	2	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	11	354	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158713	26158713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	124	302	0	ENST00000289316.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000289316	NM_138720.2	106	Gag/Aag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5214618	5214618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	233	807	0	ENST00000357368.4:c.4448G>A	p.Arg1483Gln	p.R1483Q	ENST00000357368	NM_002850.3	1483	cGg/cAg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971068	21971068	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	211	521	0	ENST00000304494.5:c.290T>C	p.Leu97Pro	p.L97P	ENST00000304494	NM_000077.4	97	cTg/cCg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971068	21971068	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	211	521	0	ENST00000304494.5:c.290T>C	p.Leu97Pro	p.L97P	ENST00000304494	NM_000077.4	97	cTg/cCg																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41749509	41749509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	133	589	0	ENST00000226382.2:c.286C>T	p.Arg96Cys	p.R96C	ENST00000226382	NM_003924.3	96	Cgc/Tgc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593515	48593521	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAGAT	TGGAGAT	-			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	15	312	0	ENST00000342988.3:c.1266_1272del	p.Gly423LeufsTer11	p.G423Lfs*11	ENST00000342988	NM_005359.5	422	ccTGGAGAT/cc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66189909	66189909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	56	357	1	ENST00000273854.3:c.3037G>T	p.Val1013Phe	p.V1013F	ENST00000273854	NM_004439.5	1013	Gtc/Ttc																																																																														
BRAF	0	MSKCC	GRCh37	7	140454033	140454033	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0024641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	113	308	0	ENST00000288602.6:c.1695T>A	p.Asp565Glu	p.D565E	ENST00000288602	NM_004333.4	565	gaT/gaA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0024670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	257	492	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	86	553	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TSC2	0	MSKCC	GRCh37	16	2120516	2120516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	26	587	0	ENST00000219476.3:c.1776C>A	p.Ser592Arg	p.S592R	ENST00000219476	NM_000548.3	592	agC/agA																																																																														
TSC1	0	MSKCC	GRCh37	9	135786440	135786440	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	33	558	0	ENST00000298552.3:c.1090A>G	p.Asn364Asp	p.N364D	ENST00000298552	NM_001162426.1	364	Aat/Gat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	219	630	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	82	552	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457223	67457232	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	GTCCTGGCAG	GTCCTGGCAG	-			P-0024671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	78	442	0	ENST00000327367.4:c.207-6_210del		p.X69_splice	ENST00000327367	NM_005902.3	69																																																																															
TNFAIP3	0	MSKCC	GRCh37	6	138199615	138199615	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	23	372	0	ENST00000237289.4:c.1033T>C	p.Tyr345His	p.Y345H	ENST00000237289	NM_001270507.1	345	Tac/Cac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100369	27100369	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	233	503	0	ENST00000324856.7:c.4081A>G	p.Met1361Val	p.M1361V	ENST00000324856	NM_006015.4	1361	Atg/Gtg																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	110	638	0	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag																																																																														
WT1	0	MSKCC	GRCh37	11	32456857	32456857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	76	432	4	ENST00000332351.3:c.35C>T	p.Pro12Leu	p.P12L	ENST00000332351	NM_024426.4	12	cCg/cTg																																																																														
EGFL7	0	MSKCC	GRCh37	9	139564734	139564735	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0024674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	119	854	0	ENST00000308874.7:c.525_526delCT	p.Val177AlafsTer106	p.V177Afs*106	ENST00000308874		175	CTc/c																																																																														
CDH1	0	MSKCC	GRCh37	16	68835651	68835651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	187	588	1	ENST00000261769.5:c.242G>A	p.Gly81Asp	p.G81D	ENST00000261769	NM_004360.3	81	gGt/gAt																																																																														
MSH6	0	MSKCC	GRCh37	2	48027436	48027436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	61	451	0	ENST00000234420.5:c.2314C>T	p.Arg772Trp	p.R772W	ENST00000234420	NM_000179.2	772	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578552	7578556	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GTACT	GTACT	-			P-0024679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	191	732	0	ENST00000269305.4:c.376-2_378del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	1162	686	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	68	505	1	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867536	45867536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	44	697	3	ENST00000391945.4:c.772C>T	p.Arg258Trp	p.R258W	ENST00000391945	NM_000400.3	258	Cgg/Tgg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87317267	87317267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	101	543	0	ENST00000277120.3:c.292A>G	p.Ile98Val	p.I98V	ENST00000277120		98	Att/Gtt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849924	156849924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	86	527	0	ENST00000524377.1:c.2180C>A	p.Pro727His	p.P727H	ENST00000524377	NM_002529.3	727	cCc/cAc																																																																														
FLT1	0	MSKCC	GRCh37	13	28877323	28877323	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	54	399	0	ENST00000282397.4:c.3998A>T	p.Tyr1333Phe	p.Y1333F	ENST00000282397	NM_002019.4	1333	tAc/tTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288854	15288854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	13	118	0	ENST00000263388.2:c.3885G>C	p.Glu1295Asp	p.E1295D	ENST00000263388	NM_000435.2	1295	gaG/gaC																																																																														
ASXL2	0	MSKCC	GRCh37	2	26022254	26022254	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	73	465	0	ENST00000435504.4:c.403G>T	p.Val135Leu	p.V135L	ENST00000435504		135	Gta/Tta																																																																														
RTEL1	0	MSKCC	GRCh37	20	62319060	62319060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	157	612	0	ENST00000508582.2:c.1490G>T	p.Arg497Leu	p.R497L	ENST00000508582		497	cGc/cTc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921365	178921365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	78	603	0	ENST00000263967.3:c.847C>T	p.Pro283Ser	p.P283S	ENST00000263967	NM_006218.2	283	Ccc/Tcc																																																																														
TET2	0	MSKCC	GRCh37	4	106193953	106193953	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	29	256	0	ENST00000380013.4:c.4415A>T	p.Lys1472Met	p.K1472M	ENST00000380013	NM_001127208.2	1472	aAg/aTg																																																																														
JAK3	0	MSKCC	GRCh37	19	17942137	17942137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	71	630	0	ENST00000458235.1:c.2878G>A	p.Glu960Lys	p.E960K	ENST00000458235	NM_000215.3	960	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1653	2148	530	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
POLE	0	MSKCC	GRCh37	12	133201562	133201562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	255	554	0	ENST00000320574.5:c.6676G>T	p.Gly2226Trp	p.G2226W	ENST00000320574	NM_006231.2	2226	Ggg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	264	532	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992301	72992301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	103	779	0	ENST00000268489.5:c.1744G>A	p.Ala582Thr	p.A582T	ENST00000268489	NM_006885.3	582	Gca/Aca																																																																														
MEF2B	0	MSKCC	GRCh37	19	19256623	19256623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	76	223	0	ENST00000162023.5:c.1090G>T	p.Asp364Tyr	p.D364Y	ENST00000162023		364	Gac/Tac																																																																														
PREX2	0	MSKCC	GRCh37	8	68993003	68993003	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs140494334		P-0024682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	246	475	0	ENST00000288368.4:c.1808A>G	p.Tyr603Cys	p.Y603C	ENST00000288368	NM_024870.2	603	tAt/tGt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169006	32169006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	302	706	0	ENST00000375023.3:c.4027C>T	p.Pro1343Ser	p.P1343S	ENST00000375023	NM_004557.3	1343	Cct/Tct																																																																														
STK11	0	MSKCC	GRCh37	19	1221987	1221987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	420	536	0	ENST00000326873.7:c.903del	p.Gln302ArgfsTer34	p.Q302Rfs*34	ENST00000326873	NM_000455.4	301	cGg/cg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106126	27106126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	165	496	0	ENST00000324856.7:c.5737G>A	p.Asp1913Asn	p.D1913N	ENST00000324856	NM_006015.4	1913	Gac/Aac																																																																														
ATM	0	MSKCC	GRCh37	11	108196917	108196917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	238	426	1	ENST00000278616.4:c.6940C>T	p.Gln2314Ter	p.Q2314*	ENST00000278616	NM_000051.3	2314	Caa/Taa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49422729	49422729	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	177	502	0	ENST00000301067.7:c.14264C>G	p.Thr4755Ser	p.T4755S	ENST00000301067	NM_003482.3	4755	aCc/aGc																																																																														
MGA	0	MSKCC	GRCh37	15	42050038	42050038	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	81	348	0	ENST00000219905.7:c.7191+1G>T		p.X2397_splice	ENST00000219905	NM_001164273.1	2397																																																																															
KEAP1	0	MSKCC	GRCh37	19	10602335	10602342	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTACGG	GGTTACGG	-			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	517	685	2	ENST00000171111.5:c.1236_1243del	p.Arg413HisfsTer29	p.R413Hfs*29	ENST00000171111	NM_203500.1	412	ccCCGTAACCgc/ccgc																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138461576	138461576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	317	543	1	ENST00000289153.2:c.445C>T	p.Arg149Ter	p.R149*	ENST00000289153	NM_006219.2	149	Cga/Tga																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553416	106553416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	217	281	1	ENST00000369096.4:c.1381C>T	p.Leu461Phe	p.L461F	ENST00000369096	NM_001198.3	461	Ctc/Ttc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0024685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	373	602	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	289	515	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
STAT5B	0	MSKCC	GRCh37	17	40375510	40375510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	52	761	1	ENST00000293328.3:c.440C>T	p.Thr147Met	p.T147M	ENST00000293328	NM_012448.3	147	aCg/aTg																																																																														
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0024685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	160	634	2	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716329	52716329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	172	593	1	ENST00000322088.6:c.773G>A	p.Arg258His	p.R258H	ENST00000322088	NM_014225.5	258	cGc/cAc																																																																														
LATS2	0	MSKCC	GRCh37	13	21557739	21557739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	173	698	0	ENST00000382592.4:c.2106G>T	p.Lys702Asn	p.K702N	ENST00000382592	NM_014572.2	702	aaG/aaT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	143	700	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	191	816	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
GATA3	0	MSKCC	GRCh37	10	8111499	8111500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	182	899	0	ENST00000346208.3:c.987dup	p.Arg330GlufsTer22	p.R330Efs*22	ENST00000346208		329	agg/aGgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023601	27023602	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	76	210	0	ENST00000324856.7:c.708_709insCT	p.Gly237LeufsTer127	p.G237Lfs*127	ENST00000324856	NM_006015.4	236	ggt/ggTCt																																																																														
YAP1	0	MSKCC	GRCh37	11	101985034	101985034	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	168	991	1	ENST00000282441.5:c.481C>T	p.Arg161Ter	p.R161*	ENST00000282441	NM_001130145.2	161	Cga/Tga																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66774092	66774092	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	17	860	0	ENST00000307102.5:c.569-1G>A		p.X190_splice	ENST00000307102	NM_002755.3	190																																																																															
RNF43	0	MSKCC	GRCh37	17	56448347	56448347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1776	203	841	0	ENST00000407977.2:c.300G>C	p.Glu100Asp	p.E100D	ENST00000407977		100	gaG/gaC																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15285044	15285044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	151	547	0	ENST00000263388.2:c.4571T>C	p.Leu1524Pro	p.L1524P	ENST00000263388	NM_000435.2	1524	cTa/cCa																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121260	29121260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	194	1086	0	ENST00000328354.6:c.415T>C	p.Tyr139His	p.Y139H	ENST00000328354	NM_007194.3	139	Tac/Cac																																																																														
STK11	0	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	149	585	2	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948747	71948748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs760925109		P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	134	791	10	ENST00000298229.2:c.3466dup	p.Arg1156ProfsTer59	p.R1156Pfs*59	ENST00000298229	NM_001567.3	1153	-/C																																																																														
NUF2	0	MSKCC	GRCh37	1	163295845	163295845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	131	662	0	ENST00000271452.3:c.4G>A	p.Glu2Lys	p.E2K	ENST00000271452	NM_145697.2	2	Gaa/Aaa																																																																														
WT1	0	MSKCC	GRCh37	11	32456272	32456272	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	191	953	1	ENST00000332351.3:c.620A>T	p.Glu207Val	p.E207V	ENST00000332351	NM_024426.4	207	gAg/gTg																																																																														
CDK8	0	MSKCC	GRCh37	13	26978108	26978108	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	204	880	0	ENST00000381527.3:c.1285G>C	p.Ala429Pro	p.A429P	ENST00000381527	NM_001260.1	429	Gct/Cct																																																																														
DICER1	0	MSKCC	GRCh37	14	95582131	95582131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	125	469	0	ENST00000343455.3:c.1780G>T	p.Val594Phe	p.V594F	ENST00000343455	NM_177438.2	594	Gtt/Ttt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602686	10602686	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	195	894	0	ENST00000171111.5:c.892A>G	p.Lys298Glu	p.K298E	ENST00000171111	NM_203500.1	298	Aag/Gag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	208	267	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	219	372	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																																																														
KIT	0	MSKCC	GRCh37	4	55593667	55593669	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0024691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	1946	519	0	ENST00000288135.5:c.1735_1737del	p.Asp579del	p.D579del	ENST00000288135	NM_000222.2	578	tATGat/tat																																																																														
ELF3	0	MSKCC	GRCh37	1	201981130	201981130	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141663834		P-0024691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	314	496	1	ENST00000359651.3:c.209C>T	p.Thr70Met	p.T70M	ENST00000359651		70	aCg/aTg																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66782854	66782854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	568	442	0	ENST00000307102.5:c.1083C>G	p.Ile361Met	p.I361M	ENST00000307102	NM_002755.3	361	atC/atG																																																																														
AMER1	0	MSKCC	GRCh37	X	63409993	63409994	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0024691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	162	391	0	ENST00000330258.3:c.3173_3174delinsAG	p.Pro1058Gln	p.P1058Q	ENST00000330258	NM_152424.3	1058	cCC/cAG																																																																														
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	407	802	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	51	372	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89352575	89352575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	168	457	1	ENST00000301030.4:c.764G>A	p.Arg255Gln	p.R255Q	ENST00000301030	NM_001256183.1	255	cGg/cAg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134884908	134884908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202034365		P-0024692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	147	628	2	ENST00000398015.3:c.1684G>A	p.Val562Ile	p.V562I	ENST00000398015	NM_004441.4	562	Gtc/Atc																																																																														
TSC2	0	MSKCC	GRCh37	16	2120544	2120545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0024692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	304	940	0	ENST00000219476.3:c.1807_1808dup	p.Leu604ProfsTer95	p.L604Pfs*95	ENST00000219476	NM_000548.3	602	tac/tACac																																																																														
APC	0	MSKCC	GRCh37	5	112176018	112176018	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	44	380	0	ENST00000257430.4:c.4728del	p.Glu1577AsnfsTer73	p.E1577Nfs*73	ENST00000257430	NM_000038.5	1576	gAa/ga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	92	553	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81957187	81957187	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	112	472	0	ENST00000359376.3:c.2405A>T	p.Glu802Val	p.E802V	ENST00000359376	NM_002661.3	802	gAg/gTg																																																																														
RBM10	0	MSKCC	GRCh37	X	47038894	47038894	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0024695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	47	652	0	ENST00000329236.7:c.670A>T	p.Thr224Ser	p.T224S	ENST00000329236	NM_001204466.1	224	Acc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	213	800	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TBX3	0	MSKCC	GRCh37	12	115120987	115120987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	40	675	0	ENST00000257566.3:c.19G>C	p.Asp7His	p.D7H	ENST00000257566	NM_016569.3	7	Gat/Cat																																																																														
MGA	0	MSKCC	GRCh37	15	42041353	42041353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	84	752	0	ENST00000219905.7:c.5548G>C	p.Glu1850Gln	p.E1850Q	ENST00000219905	NM_001164273.1	1850	Gag/Cag																																																																														
BLM	0	MSKCC	GRCh37	15	91346851	91346851	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	57	593	0	ENST00000355112.3:c.3459G>C	p.Lys1153Asn	p.K1153N	ENST00000355112	NM_000057.2	1153	aaG/aaC																																																																														
SLX4	0	MSKCC	GRCh37	16	3639021	3639021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	78	755	1	ENST00000294008.3:c.4618G>A	p.Glu1540Lys	p.E1540K	ENST00000294008	NM_032444.2	1540	Gaa/Aaa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900428	3900428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	87	853	0	ENST00000262367.5:c.668G>C	p.Gly223Ala	p.G223A	ENST00000262367	NM_004380.2	223	gGa/gCa																																																																														
CYLD	0	MSKCC	GRCh37	16	50825479	50825479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	44	459	0	ENST00000398568.2:c.2110C>G	p.Gln704Glu	p.Q704E	ENST00000398568	NM_001042412.1	704	Caa/Gaa																																																																														
NCOR1	0	MSKCC	GRCh37	17	15968325	15968325	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	45	422	0	ENST00000268712.3:c.4960G>C	p.Asp1654His	p.D1654H	ENST00000268712	NM_006311.3	1654	Gac/Cac																																																																														
EZH1	0	MSKCC	GRCh37	17	40880910	40880910	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	92	881	0	ENST00000428826.2:c.50G>C	p.Arg17Thr	p.R17T	ENST00000428826		17	aGa/aCa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93956522	93956522	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	46	545	0	ENST00000369303.4:c.2714G>C	p.Gly905Ala	p.G905A	ENST00000369303	NM_004440.3	905	gGa/gCa																																																																														
JAK2	0	MSKCC	GRCh37	9	5054879	5054879	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024925-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	33	505	0	ENST00000381652.3:c.931G>T	p.Glu311Ter	p.E311*	ENST00000381652	NM_004972.3	311	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			357	27	482	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																																																														
RAD51B	0	MSKCC	GRCh37	14	68352639	68352639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	34	470	0	ENST00000487270.1:c.506A>G	p.Lys169Arg	p.K169R	ENST00000487270	NM_133509.3	169	aAg/aGg																																																																														
GSK3B	0	MSKCC	GRCh37	3	119595300	119595300	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013820-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			464	36	428	0	ENST00000316626.5:c.869A>C	p.Glu290Ala	p.E290A	ENST00000316626		290	gAa/gCa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	115	675	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	72	567	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881401	37881401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	40	597	0	ENST00000269571.5:c.2593G>A	p.Gly865Arg	p.G865R	ENST00000269571		865	Ggg/Agg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971048	21971062	+	inframe_deletion	In_Frame_Del	DEL	GCCGCGCCCCGGCCC	GCCGCGCCCCGGCCC	-			P-0024749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	49	148	0	ENST00000304494.5:c.296_310del	p.Arg99_Arg103del	p.R99_R103del	ENST00000304494	NM_000077.4	99	cGGGCCGGGGCGCGGCtg/ctg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971048	21971062	+	inframe_deletion	In_Frame_Del	DEL	GCCGCGCCCCGGCCC	GCCGCGCCCCGGCCC	-			P-0024749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	49	148	0	ENST00000304494.5:c.296_310del	p.Arg99_Arg103del	p.R99_R103del	ENST00000304494	NM_000077.4	99	cGGGCCGGGGCGCGGCtg/ctg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971048	21971062	+	inframe_deletion	In_Frame_Del	DEL	GCCGCGCCCCGGCCC	GCCGCGCCCCGGCCC	-			P-0024749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	49	148	0	ENST00000304494.5:c.296_310del	p.Arg99_Arg103del	p.R99_R103del	ENST00000304494	NM_000077.4	99	cGGGCCGGGGCGCGGCtg/ctg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	85	663	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GPS2	0	MSKCC	GRCh37	17	7216379	7216380	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	78	622	0	ENST00000380728.2:c.868dupC	p.Gln290ProfsTer?	p.Q290Pfs*?	ENST00000380728		290	cag/cCag																																																																														
CBFB	0	MSKCC	GRCh37	16	67070608	67070608	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	35	275	0	ENST00000412916.2:c.232C>T	p.Arg78Ter	p.R78*	ENST00000412916		78	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	130	213	0				ENST00000310581	NM_198253.2																																																																																
RBM10	0	MSKCC	GRCh37	X	47044699	47044699	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	223	477	0	ENST00000329236.7:c.1867-2A>T		p.X623_splice	ENST00000329236	NM_001204466.1	623																																																																															
INPP4B	0	MSKCC	GRCh37	4	143044500	143044500	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	107	488	0	ENST00000262992.4:c.1962G>C	p.Gln654His	p.Q654H	ENST00000262992	NM_001101669.1	654	caG/caC																																																																														
PGR	0	MSKCC	GRCh37	11	100999317	100999317	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	70	929	0	ENST00000325455.5:c.485C>A	p.Ser162Tyr	p.S162Y	ENST00000325455	NM_001202474.3	162	tCc/tAc																																																																														
RB1	0	MSKCC	GRCh37	13	48955527	48955527	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	39	485	0	ENST00000267163.4:c.1643A>T	p.Lys548Ile	p.K548I	ENST00000267163	NM_000321.2	548	aAa/aTa																																																																														
NF1	0	MSKCC	GRCh37	17	29509572	29509572	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	153	692	0	ENST00000358273.4:c.777del	p.Ser259ArgfsTer22	p.S259Rfs*22	ENST00000358273	NM_001042492.2	259	agC/ag																																																																														
NF1	0	MSKCC	GRCh37	17	29509681	29509681	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	91	539	0	ENST00000358273.4:c.886A>T	p.Lys296Ter	p.K296*	ENST00000358273	NM_001042492.2	296	Aag/Tag																																																																														
PAK7	0	MSKCC	GRCh37	20	9520155	9520155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	135	517	0	ENST00000353224.5:c.2114C>A	p.Pro705Gln	p.P705Q	ENST00000353224	NM_177990.2	705	cCa/cAa																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459687	149459687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	205	807	0	ENST00000286301.3:c.520G>T	p.Asp174Tyr	p.D174Y	ENST00000286301	NM_005211.3	174	Gac/Tac																																																																														
DAXX	0	MSKCC	GRCh37	6	33288680	33288680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	116	471	0	ENST00000374542.5:c.872G>A	p.Arg291Gln	p.R291Q	ENST00000374542	NM_001141970.1	291	cGg/cAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416557	49416557	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	228	629	2	ENST00000301067.7:c.16154C>A	p.Ser5385Ter	p.S5385*	ENST00000301067	NM_003482.3	5385	tCa/tAa																																																																														
TP53	0	MSKCC	GRCh37	17	7576848	7576855	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTACCTG	AGTACCTG	-			P-0024762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	181	691	0	ENST00000269305.4:c.991_993+5del		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
VHL	0	MSKCC	GRCh37	3	10191558	10191558	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	153	275	0	ENST00000256474.2:c.551T>G	p.Leu184Arg	p.L184R	ENST00000256474	NM_000551.3	184	cTc/cGc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149499101	149499101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	45	246	0	ENST00000261799.4:c.2727G>A	p.Met909Ile	p.M909I	ENST00000261799	NM_002609.3	909	atG/atA																																																																														
BBC3	0	MSKCC	GRCh37	19	47729989	47729989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	29	111	0	ENST00000449228.1:c.400G>A	p.Gly134Ser	p.G134S	ENST00000449228	NM_001127240.2	134	Ggc/Agc																																																																														
NF2	0	MSKCC	GRCh37	22	30070892	30070892	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	115	284	0	ENST00000338641.4:c.1408C>T	p.Gln470Ter	p.Q470*	ENST00000338641	NM_000268.3	470	Cag/Tag																																																																														
BAP1	0	MSKCC	GRCh37	3	52440859	52440860	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGATACGCTCCATGATGACCCGCCGGGCCTTGTCTGTCCACTCCTCGTCCTCCCCCCAGGGCC			P-0004150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	32	238	0	ENST00000460680.1:c.581_644dup	p.Leu216AlafsTer48	p.L216Afs*48	ENST00000460680	NM_004656.3	215	ggc/ggGGCCCTGGGGGGAGGACGAGGAGTGGACAGACAAGGCCCGGCGGGTCATCATGGAGCGTATCGGc																																																																														
KDR	0	MSKCC	GRCh37	4	55955928	55955928	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	174	357	2	ENST00000263923.4:c.3234del	p.Phe1078LeufsTer24	p.F1078Lfs*24	ENST00000263923	NM_002253.2	1078	ttT/tt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	305	325	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1220715	1220715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	188	218	0	ENST00000326873.7:c.733C>T	p.Leu245Phe	p.L245F	ENST00000326873	NM_000455.4	245	Ctc/Ttc																																																																														
JAK1	0	MSKCC	GRCh37	1	65307277	65307277	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	121	175	0	ENST00000342505.4:c.2411G>C	p.Arg804Thr	p.R804T	ENST00000342505	NM_002227.2	804	aGa/aCa																																																																														
ETV1	0	MSKCC	GRCh37	7	14027744	14027744	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	189	327	0	ENST00000405192.2:c.100T>A	p.Phe34Ile	p.F34I	ENST00000405192	NM_001163147.1	34	Ttc/Atc																																																																														
HGF	0	MSKCC	GRCh37	7	81350086	81350086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	234	324	1	ENST00000222390.5:c.1246G>A	p.Asp416Asn	p.D416N	ENST00000222390	NM_000601.4	416	Gac/Aac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3819261	3819261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	136	302	0	ENST00000262367.5:c.2974G>T	p.Val992Leu	p.V992L	ENST00000262367	NM_004380.2	992	Gta/Tta																																																																														
NUP93	0	MSKCC	GRCh37	16	56852603	56852603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	169	448	0	ENST00000308159.5:c.517C>A	p.Pro173Thr	p.P173T	ENST00000308159	NM_014669.4	173	Cct/Act																																																																														
NF1	0	MSKCC	GRCh37	17	29548916	29548916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	63	194	0	ENST00000358273.4:c.1690G>T	p.Asp564Tyr	p.D564Y	ENST00000358273	NM_001042492.2	564	Gat/Tat																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11143973	11143973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	98	223	0	ENST00000344626.4:c.3554A>G	p.Gln1185Arg	p.Q1185R	ENST00000344626	NM_003072.3	1185	cAa/cGa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602762	10602763	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0004488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	144	297	0	ENST00000171111.5:c.815_816del	p.Arg272LeufsTer77	p.R272Lfs*77	ENST00000171111	NM_203500.1	272	cGC/c																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966033	25966033	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	400	480	0	ENST00000435504.4:c.3173T>C	p.Leu1058Pro	p.L1058P	ENST00000435504		1058	cTa/cCa																																																																														
ALK	0	MSKCC	GRCh37	2	29445211	29445211	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	665	438	0	ENST00000389048.3:c.3514A>G	p.Ser1172Gly	p.S1172G	ENST00000389048	NM_004304.4	1172	Agc/Ggc																																																																														
INHA	0	MSKCC	GRCh37	2	220439841	220439841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	461	580	0	ENST00000243786.2:c.694C>A	p.Arg232Ser	p.R232S	ENST00000243786	NM_002191.3	232	Cgc/Agc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89448599	89448599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	30	523	0	ENST00000336596.2:c.1563C>A	p.Ser521Arg	p.S521R	ENST00000336596	NM_005233.5	521	agC/agA																																																																														
CDH1	0	MSKCC	GRCh37	16	68847333	68847333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	371	636	0	ENST00000261769.5:c.1255G>A	p.Asp419Asn	p.D419N	ENST00000261769	NM_004360.3	419	Gat/Aat																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827523	72827523	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	872	715	0	ENST00000268489.5:c.9058G>T	p.Glu3020Ter	p.E3020*	ENST00000268489	NM_006885.3	3020	Gag/Tag																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021262	31021262	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	358	407	0	ENST00000375687.4:c.1261A>T	p.Arg421Ter	p.R421*	ENST00000375687	NM_015338.5	421	Aga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66766427	66766427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	121	176	0	ENST00000374690.3:c.1439C>T	p.Pro480Leu	p.P480L	ENST00000374690	NM_000044.3	480	cCc/cTc																																																																														
IRS2	0	MSKCC	GRCh37	13	110436931	110436945	+	inframe_deletion	In_Frame_Del	DEL	GCCCGAGGCGGAGGC	GCCCGAGGCGGAGGC	-			P-0004787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	59	87	0	ENST00000375856.3:c.1456_1470delGCCTCCGCCTCGGGC	p.Ala486_Gly490del	p.A486_G490del	ENST00000375856	NM_003749.2	486	GCCTCCGCCTCGGGC/-																																																																														
MTOR	0	MSKCC	GRCh37	1	11292527	11292535	+	inframe_deletion	In_Frame_Del	DEL	ATGTCCATG	ATGTCCATG	-			P-0004787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	268	429	0	ENST00000361445.4:c.2472_2480delCATGGACAT	p.Ile824_Asp826del	p.I824_D826del	ENST00000361445	NM_004958.3	824	atCATGGACATg/atg																																																																														
RB1	0	MSKCC	GRCh37	13	49033825	49033825	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0004787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	723	354	0	ENST00000267163.4:c.1962delG	p.Tyr655IlefsTer3	p.Y655Ifs*3	ENST00000267163	NM_000321.2	654	gtG/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			443	57	202	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0005618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			475	155	418	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9783196	9783196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			525	48	334	0	ENST00000377346.4:c.2440G>T	p.Gly814Cys	p.G814C	ENST00000377346	NM_005026.3	814	Ggc/Tgc																																																																														
BAP1	0	MSKCC	GRCh37	3	52442009	52442009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			531	218	380	1	ENST00000460680.1:c.340C>T	p.Arg114Cys	p.R114C	ENST00000460680	NM_004656.3	114	Cgc/Tgc																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911254	29911254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			435	149	290	0	ENST00000376809.5:c.553G>C	p.Asp185His	p.D185H	ENST00000376809	NM_002116.7	185	Gat/Cat																																																																														
ROS1	0	MSKCC	GRCh37	6	117629971	117629971	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			554	207	313	0	ENST00000368508.3:c.6555T>G	p.Asn2185Lys	p.N2185K	ENST00000368508	NM_002944.2	2185	aaT/aaG																																																																														
INHBA	0	MSKCC	GRCh37	7	41729753	41729753	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	130	561	0	ENST00000242208.4:c.776A>C	p.Lys259Thr	p.K259T	ENST00000242208	NM_002192.2	259	aAg/aCg																																																																														
YAP1	0	MSKCC	GRCh37	11	101984909	101984909	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			566	71	290	0	ENST00000282441.5:c.356C>G	p.Thr119Ser	p.T119S	ENST00000282441	NM_001130145.2	119	aCt/aGt																																																																														
MLL2	0	MSKCC	GRCh37	12	49432236	49432236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			734	235	578	2	ENST00000301067.7:c.8903C>T	p.Pro2968Leu	p.P2968L	ENST00000301067	NM_003482.3	2968	cCg/cTg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910400	29910437	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCGGGTGAGTGCGGGGTCGGGAGGGAAACCGCCTCTGC	GCGGGTGAGTGCGGGGTCGGGAGGGAAACCGCCTCTGC	-			P-0005618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			892	100	337	0	ENST00000376809.5:c.71_73+35delCGGGTGAGTGCGGGGTCGGGAGGGAAACCGCCTCTGCG		p.X24_splice	ENST00000376809	NM_002116.7	24																																																																															
ARID1A	0	MSKCC	GRCh37	1	27102134	27102143	+	frameshift_variant	Frame_Shift_Del	DEL	CATTAGATAC	CATTAGATAC	-			P-0005618-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			505	210	438	0	ENST00000324856.7:c.5063_5072delTAGATACCAT	p.Leu1688SerfsTer12	p.L1688Sfs*12	ENST00000324856	NM_006015.4	1687	gCATTAGATACc/gc																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005730-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			479	171	430	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0005730-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			106	31	129	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467835	50467835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005730-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			212	30	193	0	ENST00000331340.3:c.1070G>T	p.Gly357Val	p.G357V	ENST00000331340	NM_006060.4	357	gGc/gTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857656	9857656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005730-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			116	17	226	0	ENST00000330684.3:c.3745G>A	p.Asp1249Asn	p.D1249N	ENST00000330684	NM_001134407.1	1249	Gat/Aat																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	227	433	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	228	430	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	83	152	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	145	328	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	92	594	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
MLL2	0	MSKCC	GRCh37	12	49448122	49448122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	265	512	0	ENST00000301067.7:c.478G>A	p.Val160Met	p.V160M	ENST00000301067	NM_003482.3	160	Gtg/Atg																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	209	433	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46252809	46252809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	401	742	0	ENST00000371998.3:c.238C>T	p.Arg80Cys	p.R80C	ENST00000371998		80	Cgt/Tgt																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	222	534	10	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	194	292	2	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																														
MLL3	0	MSKCC	GRCh37	7	151874013	151874013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	300	530	0	ENST00000262189.6:c.8525delA	p.Asn2842MetfsTer21	p.N2842Mfs*21	ENST00000262189	NM_170606.2	2842	aAt/at																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120502056	120502056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	261	430	0	ENST00000256646.2:c.1985G>C	p.Gly662Ala	p.G662A	ENST00000256646	NM_024408.3	662	gGc/gCc																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225432	26225432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1490	94	808	0	ENST00000360408.1:c.50C>T	p.Pro17Leu	p.P17L	ENST00000360408	NM_003532.2	17	cCg/cTg																																																																														
GNAQ	0	MSKCC	GRCh37	9	80430563	80430563	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	97	194	0	ENST00000286548.4:c.445C>T	p.Arg149Ter	p.R149*	ENST00000286548	NM_002072.3	149	Cga/Tga																																																																														
CBL	0	MSKCC	GRCh37	11	119144639	119144639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	318	476	0	ENST00000264033.4:c.652G>A	p.Gly218Arg	p.G218R	ENST00000264033	NM_005188.3	218	Ggg/Agg																																																																														
SH2B3	0	MSKCC	GRCh37	12	111886075	111886075	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148791142		P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	373	630	2	ENST00000341259.2:c.1697G>A	p.Arg566Gln	p.R566Q	ENST00000341259	NM_005475.2	566	cGg/cAg																																																																														
POLE	0	MSKCC	GRCh37	12	133215865	133215865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199777048		P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	175	388	1	ENST00000320574.5:c.5398G>A	p.Val1800Met	p.V1800M	ENST00000320574	NM_006231.2	1800	Gtg/Atg																																																																														
ERCC5	0	MSKCC	GRCh37	13	103498626	103498626	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	298	519	0	ENST00000355739.4:c.10C>T	p.Gln4Ter	p.Q4*	ENST00000355739	NM_000123.3	4	Cag/Tag																																																																														
IRS2	0	MSKCC	GRCh37	13	110435258	110435258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	82	136	0	ENST00000375856.3:c.3143C>T	p.Ser1048Leu	p.S1048L	ENST00000375856	NM_003749.2	1048	tCg/tTg																																																																														
FANCA	0	MSKCC	GRCh37	16	89857881	89857881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	248	534	0	ENST00000389301.3:c.1289C>T	p.Ala430Val	p.A430V	ENST00000389301	NM_000135.2	430	gCg/gTg																																																																														
BRD4	0	MSKCC	GRCh37	19	15367812	15367812	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	184	485	0	ENST00000263377.2:c.1514A>C	p.Glu505Ala	p.E505A	ENST00000263377	NM_058243.2	505	gAg/gCg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100998	41100998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	180	489	3	ENST00000373198.4:c.1358G>A	p.Arg453His	p.R453H	ENST00000373198	NM_133170.3	453	cGc/cAc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257102	19257102	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	75	284	1	ENST00000162023.5:c.861delC	p.Ala288ProfsTer?	p.A288Pfs*?	ENST00000162023		287	ccC/cc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463298	25463300	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	193	447	0	ENST00000264709.3:c.2193_2195delCTT	p.Phe732del	p.F732del	ENST00000264709	NM_175629.2	731	ttCTTt/ttt																																																																														
FAT1	0	MSKCC	GRCh37	4	187558039	187558039	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	146	237	1	ENST00000441802.2:c.3672delC	p.Lys1225AsnfsTer9	p.K1225Nfs*9	ENST00000441802	NM_005245.3	1224	ccC/cc																																																																														
MLL2	0	MSKCC	GRCh37	12	49434822	49434822	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	286	622	0	ENST00000301067.7:c.6731del	p.Phe2244SerfsTer20	p.F2244Sfs*20	ENST00000301067	NM_003482.3	2244	tTc/tc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106562	27106562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	357	579	0	ENST00000324856.7:c.6176del	p.Asn2059ThrfsTer76	p.N2059Tfs*76	ENST00000324856	NM_006015.4	2058	gAa/ga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691807	30691807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	253	489	1	ENST00000359013.4:c.387del	p.Lys130SerfsTer19	p.K130Sfs*19	ENST00000359013	NM_001024847.2	128	gaC/ga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	481	426	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	277	493	0	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692792	89692792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	146	286	0	ENST00000371953.3:c.276C>A	p.Asp92Glu	p.D92E	ENST00000371953	NM_000314.4	92	gaC/gaA																																																																														
SOX17	0	MSKCC	GRCh37	8	55370985	55370985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	219	384	1	ENST00000297316.4:c.287C>G	p.Ala96Gly	p.A96G	ENST00000297316	NM_022454.3	96	gCc/gGc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720761	89720761	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	12	62	0	ENST00000371953.3:c.912del	p.Cys304Ter	p.C304*	ENST00000371953	NM_000314.4	304	tgC/tg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27058052	27058052	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	47	133	0	ENST00000324856.7:c.1762del	p.Gln588SerfsTer31	p.Q588Sfs*31	ENST00000324856	NM_006015.4	587	tCc/tc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779601	3779605	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCC	CAGCC	-			P-0007371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	295	404	0	ENST00000262367.5:c.5443_5447del	p.Gly1815ProfsTer149	p.G1815Pfs*149	ENST00000262367	NM_004380.2	1815	GGCTGc/c																																																																														
BRCA2	0	MSKCC	GRCh37	13	32929155	32929155	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	59	649	0	ENST00000380152.3:c.7165A>G	p.Arg2389Gly	p.R2389G	ENST00000380152		2389	Aga/Gga																																																																														
SETD2	0	MSKCC	GRCh37	3	47098925	47098926	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	109	384	0	ENST00000409792.3:c.6348_6349insA	p.Ser2117IlefsTer10	p.S2117Ifs*10	ENST00000409792	NM_014159.6	2116	-/A																																																																														
SETD2	0	MSKCC	GRCh37	3	47163371	47163373	+	frameshift_variant	Frame_Shift_Del	DEL	CTG	CTG	A			P-0007633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	41	339	0	ENST00000409792.3:c.2753_2755delinsT	p.Ser918LeufsTer16	p.S918Lfs*16	ENST00000409792	NM_014159.6	918	tCAGag/tTag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	52	249	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	87	238	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692886	89692886	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	290	273	0	ENST00000371953.3:c.370T>G	p.Cys124Gly	p.C124G	ENST00000371953	NM_000314.4	124	Tgt/Ggt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445132	49445132	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	168	539	0	ENST00000301067.7:c.2334C>A	p.Cys778Ter	p.C778*	ENST00000301067	NM_003482.3	778	tgC/tgA																																																																														
SPRED1	0	MSKCC	GRCh37	15	38545389	38545389	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0024360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	121	488	0	ENST00000299084.4:c.3G>A	p.Met1?	p.M1?	ENST00000299084	NM_152594.2	1	atG/atA																																																																														
CTCF	0	MSKCC	GRCh37	16	67655489	67655490	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	116	306	0	ENST00000264010.4:c.1355dup	p.Leu452PhefsTer13	p.L452Ffs*13	ENST00000264010	NM_006565.3	451	gat/gaTt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591272	67591318	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GCAAAAGAAGTTGAACGAGTGGTTGGGCAATGAAAACACTGAAGAGT	GCAAAAGAAGTTGAACGAGTGGTTGGGCAATGAAAACACTGAAGAGT	-			P-0024360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	107	336	0	ENST00000274335.5:c.1770_1814+2del		p.X590_splice	ENST00000274335		590																																																																															
MGA	0	MSKCC	GRCh37	15	42058426	42058426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024551-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	155	558	0	ENST00000219905.7:c.8146A>T	p.Thr2716Ser	p.T2716S	ENST00000219905	NM_001164273.1	2716	Acg/Tcg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	185	452	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
STK11	0	MSKCC	GRCh37	19	1221226	1221227	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGTCTG			P-0024561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	275	763	0	ENST00000326873.7:c.750_756dup	p.Tyr253GlyfsTer15	p.Y253Gfs*15	ENST00000326873	NM_000455.4	250	acg/acGGGTCTGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	220	882	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508064	106508064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	30	260	2	ENST00000359195.3:c.58C>T	p.Arg20Cys	p.R20C	ENST00000359195	NM_002649.2	20	Cgc/Tgc																																																																														
MYCL1	0	MSKCC	GRCh37	1	40363628	40363628	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	98	697	0	ENST00000397332.2:c.601G>C	p.Asp201His	p.D201H	ENST00000397332	NM_001033082.2	201	Gat/Cat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421620	49421620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	257	913	0	ENST00000301067.7:c.14609A>G	p.Lys4870Arg	p.K4870R	ENST00000301067	NM_003482.3	4870	aAg/aGg																																																																														
FLT1	0	MSKCC	GRCh37	13	29004248	29004248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	92	645	1	ENST00000282397.4:c.1045G>T	p.Gly349Cys	p.G349C	ENST00000282397	NM_002019.4	349	Ggc/Tgc																																																																														
AXL	0	MSKCC	GRCh37	19	41744461	41744462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGGTACCCTGTT			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	100	985	0	ENST00000301178.4:c.1090_1102dup	p.Arg368ProfsTer123	p.R368Pfs*123	ENST00000301178	NM_021913.4	361	cag/cAGGGTACCCTGTTag																																																																														
MAPK1	0	MSKCC	GRCh37	22	22160186	22160186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	36	512	0	ENST00000215832.6:c.445G>A	p.Asp149Asn	p.D149N	ENST00000215832	NM_002745.4	149	Gac/Aac																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259458	89259458	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	105	818	0	ENST00000336596.2:c.602A>T	p.Lys201Met	p.K201M	ENST00000336596	NM_005233.5	201	aAg/aTg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176518076	176518076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	39	893	0	ENST00000292408.4:c.574C>G	p.His192Asp	p.H192D	ENST00000292408	NM_213647.1	192	Cat/Gat																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066627	94066627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	47	777	0	ENST00000369303.4:c.1132G>C	p.Glu378Gln	p.E378Q	ENST00000369303	NM_004440.3	378	Gaa/Caa																																																																														
INHBA	0	MSKCC	GRCh37	7	41729336	41729336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	168	681	0	ENST00000242208.4:c.1193C>T	p.Pro398Leu	p.P398L	ENST00000242208	NM_002192.2	398	cCc/cTc																																																																														
NBN	0	MSKCC	GRCh37	8	90967598	90967598	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	67	669	0	ENST00000265433.3:c.1310del	p.Pro437GlnfsTer3	p.P437Qfs*3	ENST00000265433	NM_002485.4	437	cCa/ca																																																																														
NBN	0	MSKCC	GRCh37	8	90967652	90967652	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	76	659	0	ENST00000265433.3:c.1256A>G	p.Asn419Ser	p.N419S	ENST00000265433	NM_002485.4	419	aAt/aGt																																																																														
PPP6C	0	MSKCC	GRCh37	9	127933411	127933411	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	33	865	3	ENST00000373547.4:c.124C>T	p.Gln42Ter	p.Q42*	ENST00000373547	NM_002721.4	42	Cag/Tag																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	104	712	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0024568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	257	809	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																														
CBFB	0	MSKCC	GRCh37	16	67070639	67070639	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0024568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	60	340	0	ENST00000412916.2:c.263T>G	p.Leu88Ter	p.L88*	ENST00000412916		88	tTa/tGa																																																																														
PREX2	0	MSKCC	GRCh37	8	68931898	68931898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	48	828	0	ENST00000288368.4:c.328C>G	p.Leu110Val	p.L110V	ENST00000288368	NM_024870.2	110	Ctt/Gtt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	38	639	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0024570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	76	699	1	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
INPPL1	0	MSKCC	GRCh37	11	71944161	71944161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	87	784	0	ENST00000298229.2:c.1994G>A	p.Arg665Gln	p.R665Q	ENST00000298229	NM_001567.3	665	cGg/cAg																																																																														
EPAS1	0	MSKCC	GRCh37	2	46583304	46583304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	46	455	0	ENST00000263734.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000263734	NM_001430.4	78	Gag/Aag																																																																														
RAD50	0	MSKCC	GRCh37	5	131924481	131924481	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150030986		P-0024570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	28	628	1	ENST00000265335.6:c.1154G>A	p.Arg385His	p.R385H	ENST00000265335		385	cGt/cAt																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5534888	5534888	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	54	642	2	ENST00000397747.3:c.199T>C	p.Ser67Pro	p.S67P	ENST00000397747	NM_025239.3	67	Tcc/Ccc																																																																														
TP53	0	MSKCC	GRCh37	17	7577555	7577555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	54	877	0	ENST00000269305.4:c.726C>G	p.Cys242Trp	p.C242W	ENST00000269305	NM_001126112.2	242	tgC/tgG																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306631	41306631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	56	898	3	ENST00000373198.4:c.1028C>T	p.Pro343Leu	p.P343L	ENST00000373198	NM_133170.3	343	cCc/cTc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120466375	120466375	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	38	722	0	ENST00000256646.2:c.4744G>T	p.Asp1582Tyr	p.D1582Y	ENST00000256646	NM_024408.3	1582	Gac/Tac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056321	27056321	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	53	573	0	ENST00000324856.7:c.1317G>C	p.Gln439His	p.Q439H	ENST00000324856	NM_006015.4	439	caG/caC																																																																														
TET1	0	MSKCC	GRCh37	10	70332972	70332972	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	36	897	3	ENST00000373644.4:c.877G>T	p.Glu293Ter	p.E293*	ENST00000373644	NM_030625.2	293	Gaa/Taa																																																																														
TSHR	0	MSKCC	GRCh37	14	81609520	81609520	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	39	595	0	ENST00000298171.2:c.1118C>G	p.Pro373Arg	p.P373R	ENST00000298171	NM_000369.2	373	cCc/cGc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88690614	88690614	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	43	618	0	ENST00000360948.2:c.416T>A	p.Leu139His	p.L139H	ENST00000360948	NM_001012338.2	139	cTc/cAc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78921118	78921118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	40	760	0	ENST00000306801.3:c.3232G>T	p.Gly1078Cys	p.G1078C	ENST00000306801	NM_020761.2	1078	Ggc/Tgc																																																																														
STK11	0	MSKCC	GRCh37	19	1207033	1207033	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	58	805	0	ENST00000326873.7:c.122del	p.Lys41SerfsTer10	p.K41Sfs*10	ENST00000326873	NM_000455.4	41	Aag/ag																																																																														
BABAM1	0	MSKCC	GRCh37	19	17389671	17389671	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	42	775	0	ENST00000359435.4:c.806del	p.Gly269AlafsTer100	p.G269Afs*100	ENST00000359435	NM_001033549.1	268	atG/at																																																																														
JAK3	0	MSKCC	GRCh37	19	17941028	17941028	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	64	970	0	ENST00000458235.1:c.3097-1G>T		p.X1033_splice	ENST00000458235	NM_000215.3	1033																																																																															
POLD1	0	MSKCC	GRCh37	19	50910258	50910258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	69	863	0	ENST00000440232.2:c.1513C>A	p.Arg505Ser	p.R505S	ENST00000440232	NM_002691.3	505	Cgc/Agc																																																																														
CUL3	0	MSKCC	GRCh37	2	225370684	225370684	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	47	542	0	ENST00000264414.4:c.1195G>T	p.Gly399Ter	p.G399*	ENST00000264414	NM_003590.4	399	Gga/Tga																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259521	89259521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	30	637	1	ENST00000336596.2:c.665C>A	p.Ser222Tyr	p.S222Y	ENST00000336596	NM_005233.5	222	tCc/tAc																																																																														
FAT1	0	MSKCC	GRCh37	4	187534440	187534440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	22	665	0	ENST00000441802.2:c.9286C>T	p.Leu3096Phe	p.L3096F	ENST00000441802	NM_005245.3	3096	Ctc/Ttc																																																																														
PLK2	0	MSKCC	GRCh37	5	57751568	57751568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	30	498	0	ENST00000274289.3:c.1423G>T	p.Val475Leu	p.V475L	ENST00000274289	NM_006622.3	475	Gtg/Ttg																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149506143	149506143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	29	778	0	ENST00000261799.4:c.1614C>G	p.Ile538Met	p.I538M	ENST00000261799	NM_002609.3	538	atC/atG																																																																														
ESR1	0	MSKCC	GRCh37	6	152332918	152332918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	56	489	0	ENST00000206249.3:c.1224G>C	p.Leu408Phe	p.L408F	ENST00000206249	NM_000125.3	408	ttG/ttC																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38205301	38205301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	101	1213	0	ENST00000317025.8:c.389C>G	p.Pro130Arg	p.P130R	ENST00000317025	NM_023034.1	130	cCt/cGt																																																																														
KLF4	0	MSKCC	GRCh37	9	110250445	110250445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	25	755	0	ENST00000374672.4:c.230G>T	p.Gly77Val	p.G77V	ENST00000374672	NM_004235.4	77	gGc/gTc																																																																														
PPP6C	0	MSKCC	GRCh37	9	127915943	127915943	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	42	767	1	ENST00000373547.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000373547	NM_002721.4	180	Gaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	97	813	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	74	705	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
TSC2	0	MSKCC	GRCh37	16	2108765	2108765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	73	806	2	ENST00000219476.3:c.866C>T	p.Ala289Val	p.A289V	ENST00000219476	NM_000548.3	289	gCg/gTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971087	21971087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	65	598	0	ENST00000304494.5:c.271del	p.Leu91TrpfsTer55	p.L91Wfs*55	ENST00000304494	NM_000077.4	91	Ctg/tg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971087	21971087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	65	598	0	ENST00000304494.5:c.271del	p.Leu91TrpfsTer55	p.L91Wfs*55	ENST00000304494	NM_000077.4	91	Ctg/tg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971087	21971087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	65	598	0	ENST00000304494.5:c.271del	p.Leu91TrpfsTer55	p.L91Wfs*55	ENST00000304494	NM_000077.4	91	Ctg/tg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581298	48581298	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	99	757	0	ENST00000342988.3:c.602T>A	p.Leu201Ter	p.L201*	ENST00000342988	NM_005359.5	201	tTa/tAa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949155	44949155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	75	309	0	ENST00000377967.4:c.3716G>T	p.Trp1239Leu	p.W1239L	ENST00000377967	NM_021140.2	1239	tGg/tTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	35	538	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
SPEN	0	MSKCC	GRCh37	1	16258670	16258670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	33	654	0	ENST00000375759.3:c.5935G>C	p.Glu1979Gln	p.E1979Q	ENST00000375759	NM_015001.2	1979	Gag/Cag																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032045	26032045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	32	521	0	ENST00000244661.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000244661	NM_003537.3	82	Gat/Aat																																																																														
SPEN	0	MSKCC	GRCh37	1	16259936	16259936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	53	687	0	ENST00000375759.3:c.7201G>A	p.Asp2401Asn	p.D2401N	ENST00000375759	NM_015001.2	2401	Gac/Aac																																																																														
SPEN	0	MSKCC	GRCh37	1	16259189	16259189	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	52	622	0	ENST00000375759.3:c.6454G>C	p.Asp2152His	p.D2152H	ENST00000375759	NM_015001.2	2152	Gac/Cac																																																																														
SPEN	0	MSKCC	GRCh37	1	16259699	16259699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	54	537	1	ENST00000375759.3:c.6964G>T	p.Glu2322Ter	p.E2322*	ENST00000375759	NM_015001.2	2322	Gaa/Taa																																																																														
SPEN	0	MSKCC	GRCh37	1	16259830	16259830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	42	595	0	ENST00000375759.3:c.7095G>C	p.Glu2365Asp	p.E2365D	ENST00000375759	NM_015001.2	2365	gaG/gaC																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481375	56481375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	142	776	1	ENST00000267101.3:c.562G>A	p.Glu188Lys	p.E188K	ENST00000267101	NM_001982.3	188	Gag/Aag																																																																														
TBX3	0	MSKCC	GRCh37	12	115120750	115120750	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	215	638	0	ENST00000257566.3:c.256del	p.His86IlefsTer2	p.H86Ifs*2	ENST00000257566	NM_016569.3	86	Cat/at																																																																														
IRS2	0	MSKCC	GRCh37	13	110438345	110438345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	96	230	0	ENST00000375856.3:c.56A>G	p.Asn19Ser	p.N19S	ENST00000375856	NM_003749.2	19	aAc/aGc																																																																														
CDH1	0	MSKCC	GRCh37	16	68849650	68849650	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	197	524	0	ENST00000261769.5:c.1554del	p.Glu518AspfsTer4	p.E518Dfs*4	ENST00000261769	NM_004360.3	518	gAa/ga																																																																														
NCOR1	0	MSKCC	GRCh37	17	15960943	15960943	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	43	487	1	ENST00000268712.3:c.6277G>C	p.Val2093Leu	p.V2093L	ENST00000268712	NM_006311.3	2093	Gtg/Ctg																																																																														
NF1	0	MSKCC	GRCh37	17	29661936	29661936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	60	672	0	ENST00000358273.4:c.5893G>A	p.Asp1965Asn	p.D1965N	ENST00000358273	NM_001042492.2	1965	Gat/Aat																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627477	14627477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	38	559	0	ENST00000254322.2:c.593G>C	p.Arg198Pro	p.R198P	ENST00000254322	NM_006145.1	198	cGa/cCa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15295222	15295222	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142405648		P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	145	889	0	ENST00000263388.2:c.2450C>T	p.Pro817Leu	p.P817L	ENST00000263388	NM_000435.2	817	cCc/cTc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46574146	46574146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	222	692	0	ENST00000263734.3:c.161C>T	p.Ala54Val	p.A54V	ENST00000263734	NM_001430.4	54	gCc/gTc																																																																														
RAC2	0	MSKCC	GRCh37	22	37622819	37622819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	45	734	0	ENST00000249071.6:c.473C>T	p.Ser158Leu	p.S158L	ENST00000249071	NM_002872.4	158	tCa/tTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0024578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	26	337	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710622	114710622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	35	545	2	ENST00000543371.1:c.107C>T	p.Ser36Leu	p.S36L	ENST00000543371	NM_001198531.1	36	tCg/tTg																																																																														
CDH1	0	MSKCC	GRCh37	16	68835723	68835723	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	49	697	0	ENST00000261769.5:c.315del	p.Thr106ProfsTer11	p.T106Pfs*11	ENST00000261769	NM_004360.3	105	tCc/tc																																																																														
NF1	4763	MSKCC	GRCh37	17	29665755	29665756	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A	rs1230257170		P-0024578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	40	423	0	ENST00000358273.4:c.6854dup	p.Tyr2285Ter	p.Y2285*	ENST00000358273	NM_001042492.2	2285	tac/tAac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	71	674	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	78	669	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0024579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	24	243	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0024579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	24	243	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591809	48591809	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	72	480	0	ENST00000342988.3:c.972T>A	p.Cys324Ter	p.C324*	ENST00000342988	NM_005359.5	324	tgT/tgA																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139410151	139410151	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	59	574	1	ENST00000277541.6:c.1687T>A	p.Cys563Ser	p.C563S	ENST00000277541	NM_017617.3	563	Tgc/Agc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696438	47696438	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	290	703	0	ENST00000347630.2:c.385A>G	p.Lys129Glu	p.K129E	ENST00000347630	NM_001007230.1	129	Aaa/Gaa																																																																														
RB1	0	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0024584-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	58	413	0	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																																																															
TP53	0	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	112	769	2	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg																																																																														
PTEN	0	MSKCC	GRCh37	10	89712013	89712014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	50	298	0	ENST00000371953.3:c.632dup	p.Cys211TrpfsTer32	p.C211Wfs*32	ENST00000371953	NM_000314.4	211	tgc/tGgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	48	588	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	240	804	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																																																														
APC	0	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	44	391	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa																																																																														
HGF	0	MSKCC	GRCh37	7	81335697	81335697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	50	646	1	ENST00000222390.5:c.1663G>A	p.Gly555Arg	p.G555R	ENST00000222390	NM_000601.4	555	Gga/Aga																																																																														
TSHR	0	MSKCC	GRCh37	14	81609757	81609757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	30	512	0	ENST00000298171.2:c.1355T>C	p.Leu452Pro	p.L452P	ENST00000298171	NM_000369.2	452	cTc/cCc																																																																														
APC	0	MSKCC	GRCh37	5	112174641	112174651	+	frameshift_variant	Frame_Shift_Del	DEL	CTAATCATGGA	CTAATCATGGA	-			P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	55	551	0	ENST00000257430.4:c.3350_3360del	p.Ser1117TyrfsTer2	p.S1117Yfs*2	ENST00000257430	NM_000038.5	1117	tCTAATCATGGA/t																																																																														
APC	0	MSKCC	GRCh37	5	112174668	112174668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	53	522	1	ENST00000257430.4:c.3377G>T	p.Ser1126Ile	p.S1126I	ENST00000257430	NM_000038.5	1126	aGc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	174	716	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	48	645	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
ATM	0	MSKCC	GRCh37	11	108141793	108141793	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0024587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	56	573	0	ENST00000278616.4:c.2841T>A	p.Tyr947Ter	p.Y947*	ENST00000278616	NM_000051.3	947	taT/taA																																																																														
SDHA	0	MSKCC	GRCh37	5	235428	235428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	39	718	0	ENST00000264932.6:c.1234G>A	p.Gly412Ser	p.G412S	ENST00000264932	NM_004168.2	412	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	70	151	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TP53	0	MSKCC	GRCh37	17	7578249	7578250	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	156	374	0	ENST00000269305.4:c.599dupA	p.Asn200LysfsTer9	p.N200Kfs*9	ENST00000269305	NM_001126112.2	200	aat/aaAt																																																																														
ELF3	0	MSKCC	GRCh37	1	201981803	201981803	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139817965		P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	78	419	0	ENST00000359651.3:c.514G>A	p.Asp172Asn	p.D172N	ENST00000359651		172	Gac/Aac																																																																														
MEN1	0	MSKCC	GRCh37	11	64575551	64575551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	122	339	0	ENST00000337652.1:c.481G>A	p.Gly161Ser	p.G161S	ENST00000337652	NM_130803.2	161	Ggt/Agt																																																																														
MDC1	0	MSKCC	GRCh37	6	30672772	30672772	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	160	493	0	ENST00000376406.3:c.4188A>T	p.Lys1396Asn	p.K1396N	ENST00000376406	NM_014641.2	1396	aaA/aaT																																																																														
MDC1	0	MSKCC	GRCh37	6	30673782	30673782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	37	321	0	ENST00000376406.3:c.3178C>A	p.His1060Asn	p.H1060N	ENST00000376406	NM_014641.2	1060	Cat/Aat																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38189104	38189104	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0024603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	53	270	0	ENST00000317025.8:c.911-1G>A		p.X304_splice	ENST00000317025	NM_023034.1	304																																																																															
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	67	539	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	157	457	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0024611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	380	822	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
KIT	0	MSKCC	GRCh37	4	55593607	55593607	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	142	442	0	ENST00000288135.5:c.1673A>C	p.Lys558Thr	p.K558T	ENST00000288135	NM_000222.2	558	aAg/aCg																																																																														
AXIN1	0	MSKCC	GRCh37	16	396176	396176	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	195	487	0	ENST00000262320.3:c.850A>T	p.Arg284Ter	p.R284*	ENST00000262320	NM_003502.3	284	Aga/Tga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857467	9857467	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	169	460	0	ENST00000330684.3:c.3934del	p.Ser1312AlafsTer85	p.S1312Afs*85	ENST00000330684	NM_001134407.1	1312	Agc/gc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15965426	15965426	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	169	346	0	ENST00000268712.3:c.5380C>T	p.Arg1794Ter	p.R1794*	ENST00000268712	NM_006311.3	1794	Cga/Tga																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467083	25467094	+	inframe_deletion	In_Frame_Del	DEL	GCCGCCGCAGCA	GCCGCCGCAGCA	-			P-0024611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	175	690	0	ENST00000264709.3:c.1781_1792del	p.Leu594_Arg597del	p.L594_R597del	ENST00000264709	NM_175629.2	594	cTGCTGCGGCGGCga/cga																																																																														
STAG2	0	MSKCC	GRCh37	X	123211852	123211853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAAGGCAG			P-0024611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	44	206	0	ENST00000218089.9:c.2720_2727dup	p.Ile910GlnfsTer4	p.I910Qfs*4	ENST00000218089	NM_001042749.1	907	aca/aCAAGGCAGca																																																																														
TP53	0	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	27	723	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891188	101891188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	21	386	0	ENST00000374994.4:c.149C>G	p.Thr50Arg	p.T50R	ENST00000374994	NM_004612.2	50	aCa/aGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	156	527	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KDR	0	MSKCC	GRCh37	4	55979551	55979551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	170	558	0	ENST00000263923.4:c.896G>A	p.Arg299Gln	p.R299Q	ENST00000263923	NM_002253.2	299	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0024613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	214	669	1	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
RFWD2	0	MSKCC	GRCh37	1	175916343	175916343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	82	399	0	ENST00000367669.3:c.2166G>C	p.Gln722His	p.Q722H	ENST00000367669	NM_022457.5	722	caG/caC																																																																														
CD79B	0	MSKCC	GRCh37	17	62008712	62008712	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	94	631	0	ENST00000392795.3:c.104G>T	p.Arg35Leu	p.R35L	ENST00000392795	NM_001039933.1	35	cGg/cTg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62326183	62326183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	186	628	1	ENST00000508582.2:c.3271G>A	p.Ala1091Thr	p.A1091T	ENST00000508582		1091	Gcc/Acc																																																																														
MSH6	0	MSKCC	GRCh37	2	48027806	48027807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			416	81	399	0	ENST00000234420.5:c.2690dup	p.Asn897LysfsTer3	p.N897Kfs*3	ENST00000234420	NM_000179.2	895	aca/acAa																																																																														
EGFR	0	MSKCC	GRCh37	7	55241722	55241722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	228	464	2	ENST00000275493.2:c.2170G>A	p.Gly724Ser	p.G724S	ENST00000275493	NM_005228.3	724	Ggc/Agc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0001625-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			502	221	518	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969465	44969470	+	inframe_deletion	In_Frame_Del	DEL	CTGATG	CTGATG	-			P-0004138-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			99	149	289	0	ENST00000377967.4:c.4148_4153del	p.Leu1383_Met1384del	p.L1383_M1384del	ENST00000377967	NM_021140.2	1383	CTGATG/-																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343359	118343360	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0004138-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			125	149	359	0	ENST00000534358.1:c.1485_1486delinsAT	p.Ile496Phe	p.I496F	ENST00000534358	NM_005933.3	495	gaGAtt/gaATtt																																																																														
SH2B3	0	MSKCC	GRCh37	12	111886036	111886036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004138-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	155	581	0	ENST00000341259.2:c.1658C>A	p.Ser553Ter	p.S553*	ENST00000341259	NM_005475.2	553	tCg/tAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	40	339	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945382	151945382	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	41	432	0	ENST00000262189.6:c.2137del	p.Glu713AsnfsTer5	p.E713Nfs*5	ENST00000262189	NM_170606.2	713	Gaa/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	407	747	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
GATA3	0	MSKCC	GRCh37	10	8097738	8097738	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	205	660	0	ENST00000346208.3:c.120G>C	p.Gln40His	p.Q40H	ENST00000346208		40	caG/caC																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857926	9857926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	159	599	0	ENST00000330684.3:c.3475C>T	p.Arg1159Cys	p.R1159C	ENST00000330684	NM_001134407.1	1159	Cgc/Tgc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78617593	78617593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	129	445	1	ENST00000306801.3:c.331G>A	p.Glu111Lys	p.E111K	ENST00000306801	NM_020761.2	111	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	42	556	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	127	568	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495620	56495621	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0024537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	48	452	0	ENST00000267101.3:c.3810_3811delinsAT	p.Gly1271Cys	p.G1271C	ENST00000267101	NM_001982.3	1270	ggTGgt/ggATgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0024515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	227	662	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
GATA3	0	MSKCC	GRCh37	10	8100451	8100451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	136	706	0	ENST00000346208.3:c.425C>T	p.Ser142Leu	p.S142L	ENST00000346208		142	tCg/tTg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176518103	176518103	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	52	513	0	ENST00000292408.4:c.601C>T	p.Arg201Trp	p.R201W	ENST00000292408	NM_213647.1	201	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432651	49432651	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	146	807	1	ENST00000301067.7:c.8488C>T	p.Arg2830Ter	p.R2830*	ENST00000301067	NM_003482.3	2830	Cga/Tga																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385230	41385230	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	90	565	0	ENST00000373198.4:c.731A>C	p.Asn244Thr	p.N244T	ENST00000373198	NM_133170.3	244	aAc/aCc																																																																														
SPEN	0	MSKCC	GRCh37	1	16262300	16262300	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	91	253	0	ENST00000375759.3:c.9565T>C	p.Tyr3189His	p.Y3189H	ENST00000375759	NM_015001.2	3189	Tat/Cat																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716211	52716211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	125	547	0	ENST00000322088.6:c.655T>G	p.Ser219Ala	p.S219A	ENST00000322088	NM_014225.5	219	Tcg/Gcg																																																																														
ALK	0	MSKCC	GRCh37	2	29917829	29917829	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	121	765	0	ENST00000389048.3:c.839T>C	p.Leu280Pro	p.L280P	ENST00000389048	NM_004304.4	280	cTg/cCg																																																																														
INHA	0	MSKCC	GRCh37	2	220440060	220440060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	287	802	0	ENST00000243786.2:c.913C>A	p.Leu305Ile	p.L305I	ENST00000243786	NM_002191.3	305	Ctt/Att																																																																														
WT1	0	MSKCC	GRCh37	11	32439192	32439192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	35	634	0	ENST00000332351.3:c.881T>C	p.Leu294Ser	p.L294S	ENST00000332351	NM_024426.4	294	tTa/tCa																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469134	25469134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	64	822	0	ENST00000264709.3:c.1324G>C	p.Glu442Gln	p.E442Q	ENST00000264709	NM_175629.2	442	Gaa/Caa																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	183	671	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	105	567	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	105	567	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056210	26056210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	65	506	0	ENST00000343677.2:c.447G>C	p.Lys149Asn	p.K149N	ENST00000343677	NM_005319.3	149	aaG/aaC																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482854	67482854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	62	497	0	ENST00000327367.4:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000327367	NM_005902.3	420	Cgc/Tgc																																																																														
APC	0	MSKCC	GRCh37	5	112137036	112137036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	90	431	0	ENST00000257430.4:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000257430	NM_000038.5	264	Caa/Taa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151891193	151891193	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	133	511	1	ENST00000262189.6:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000262189	NM_170606.2	1521	Gaa/Taa																																																																														
NUP93	0	MSKCC	GRCh37	16	56857686	56857686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	81	503	0	ENST00000308159.5:c.722C>G	p.Ala241Gly	p.A241G	ENST00000308159	NM_014669.4	241	gCc/gGc																																																																														
NUP93	0	MSKCC	GRCh37	16	56868304	56868304	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	52	274	0	ENST00000308159.5:c.1687G>C	p.Glu563Gln	p.E563Q	ENST00000308159	NM_014669.4	563	Gaa/Caa																																																																														
UPF1	0	MSKCC	GRCh37	19	18964084	18964084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	59	502	0	ENST00000262803.5:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000262803	NM_002911.3	361	Gag/Aag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251647	212251647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	53	450	0	ENST00000342788.4:c.3412G>A	p.Glu1138Lys	p.E1138K	ENST00000342788	NM_005235.2	1138	Gaa/Aaa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41279562	41279562	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	115	421	0	ENST00000349496.5:c.2132A>T	p.Gln711Leu	p.Q711L	ENST00000349496	NM_001904.3	711	cAg/cTg																																																																														
SETD2	0	MSKCC	GRCh37	3	47164744	47164744	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	117	405	0	ENST00000409792.3:c.1382C>G	p.Ser461Ter	p.S461*	ENST00000409792	NM_014159.6	461	tCa/tGa																																																																														
FLT4	0	MSKCC	GRCh37	5	180048863	180048863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	155	852	0	ENST00000261937.6:c.1699G>C	p.Glu567Gln	p.E567Q	ENST00000261937	NM_182925.4	567	Gag/Cag																																																																														
PNRC1	0	MSKCC	GRCh37	6	89790752	89790752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	65	710	0	ENST00000336032.3:c.139G>T	p.Asp47Tyr	p.D47Y	ENST00000336032	NM_006813.2	47	Gac/Tac																																																																														
PPP6C	0	MSKCC	GRCh37	9	127911953	127911953	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	104	385	0	ENST00000373547.4:c.917G>C	p.Ter306SerextTer7	p.*306Sext*7	ENST00000373547	NM_002721.4	306	tGa/tCa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27092983	27092984	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	T			P-0024520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	161	380	0	ENST00000324856.7:c.2914_2915delinsT	p.Asp972LeufsTer2	p.D972Lfs*2	ENST00000324856	NM_006015.4	972	GAt/Tt																																																																														
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	181	873	3	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061833	38061850	+	inframe_deletion	In_Frame_Del	DEL	GGTGTTCATGGTCATGTA	GGTGTTCATGGTCATGTA	-			P-0024522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	135	994	1	ENST00000250448.2:c.139_156delTACATGACCATGAACACC	p.Tyr47_Thr52del	p.Y47_T52del	ENST00000250448	NM_004496.3	47	TACATGACCATGAACACC/-																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	244	283	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
FOXO1	0	MSKCC	GRCh37	13	41133772	41133772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	114	336	0	ENST00000379561.5:c.1856G>A	p.Arg619Gln	p.R619Q	ENST00000379561	NM_002015.3	619	cGg/cAg																																																																														
RAD54L	0	MSKCC	GRCh37	1	46738381	46738381	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	232	597	1	ENST00000371975.4:c.1282del	p.Leu428Ter	p.L428*	ENST00000371975	NM_003579.3	428	Ctg/tg																																																																														
RAD54L	0	MSKCC	GRCh37	1	46739096	46739096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	287	633	0	ENST00000371975.4:c.1445C>G	p.Pro482Arg	p.P482R	ENST00000371975	NM_003579.3	482	cCt/cGt																																																																														
RAD54L	0	MSKCC	GRCh37	1	46739111	46739111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	247	615	0	ENST00000371975.4:c.1460C>T	p.Ser487Phe	p.S487F	ENST00000371975	NM_003579.3	487	tCt/tTt																																																																														
RAD54L	0	MSKCC	GRCh37	1	46739135	46739135	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	158	527	0	ENST00000371975.4:c.1484C>T	p.Ser495Leu	p.S495L	ENST00000371975	NM_003579.3	495	tCa/tTa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3860630	3860630	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	199	709	0	ENST00000262367.5:c.949A>G	p.Thr317Ala	p.T317A	ENST00000262367	NM_004380.2	317	Act/Gct																																																																														
STAT3	0	MSKCC	GRCh37	17	40490763	40490764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	183	613	0	ENST00000264657.5:c.535dup	p.Leu179ProfsTer42	p.L179Pfs*42	ENST00000264657	NM_139276.2	179	ctc/cCtc																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	15	794	3	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
ETV6	0	MSKCC	GRCh37	12	11992072	11992072	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0024527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	15	291	0	ENST00000396373.4:c.164-2A>T		p.X55_splice	ENST00000396373	NM_001987.4	55																																																																															
NF1	0	MSKCC	GRCh37	17	29661856	29661856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	25	528	0	ENST00000358273.4:c.5813G>A	p.Ser1938Asn	p.S1938N	ENST00000358273	NM_001042492.2	1938	aGt/aAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	239	675	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992930	72992930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			998	159	803	1	ENST00000268489.5:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000268489	NM_006885.3	372	cGa/cAa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30105530	30105530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	69	786	0	ENST00000331968.5:c.1156G>A	p.Asp386Asn	p.D386N	ENST00000331968	NM_002742.2	386	Gac/Aac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829170	72829170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	76	701	1	ENST00000268489.5:c.7411C>T	p.Leu2471Phe	p.L2471F	ENST00000268489	NM_006885.3	2471	Ctc/Ttc																																																																														
CARM1	0	MSKCC	GRCh37	19	11015680	11015680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	48	675	1	ENST00000327064.4:c.274C>T	p.Arg92Cys	p.R92C	ENST00000327064	NM_199141.1	92	Cgt/Tgt																																																																														
JAK3	0	MSKCC	GRCh37	19	17949175	17949175	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	63	789	2	ENST00000458235.1:c.1466A>T	p.Gln489Leu	p.Q489L	ENST00000458235	NM_000215.3	489	cAg/cTg																																																																														
BCOR	0	MSKCC	GRCh37	X	39932798	39932798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	29	380	1	ENST00000378444.4:c.1801C>A	p.Pro601Thr	p.P601T	ENST00000378444	NM_001123385.1	601	Ccc/Acc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1415	132	902	1	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																																																														
ARID2	0	MSKCC	GRCh37	12	46245033	46245033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	94	725	1	ENST00000334344.6:c.3127C>T	p.Gln1043Ter	p.Q1043*	ENST00000334344	NM_152641.2	1043	Caa/Taa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575149	48575149	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	64	442	0	ENST00000342988.3:c.343T>G	p.Cys115Gly	p.C115G	ENST00000342988	NM_005359.5	115	Tgt/Ggt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	123	755	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	149	760	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12028638	12028638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	54	513	1	ENST00000353533.5:c.841C>T	p.Arg281Ter	p.R281*	ENST00000353533	NM_003010.3	281	Cga/Tga																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515211	103515211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	45	441	1	ENST00000355739.4:c.1712C>T	p.Pro571Leu	p.P571L	ENST00000355739	NM_000123.3	571	cCg/cTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16259270	16259270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	45	404	0	ENST00000375759.3:c.6535G>T	p.Ala2179Ser	p.A2179S	ENST00000375759	NM_015001.2	2179	Gca/Tca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099123	27099123	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	75	644	0	ENST00000324856.7:c.3539+1del		p.S1180fs	ENST00000324856	NM_006015.4	1180	aGc/ac																																																																														
POLE	0	MSKCC	GRCh37	12	133202830	133202830	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	123	840	0	ENST00000320574.5:c.6404T>C	p.Val2135Ala	p.V2135A	ENST00000320574	NM_006231.2	2135	gTc/gCc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211685	36211685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	73	707	1	ENST00000222270.7:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000222270	NM_014727.1	479	cGg/cAg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101867493	101867493	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024532-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	10	65	0	ENST00000374994.4:c.7del	p.Ala3ArgfsTer47	p.A3Rfs*47	ENST00000374994	NM_004612.2	2	gaG/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006009-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			415	128	924	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271835	15271835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006009-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	64	925	1	ENST00000263388.2:c.6604G>A	p.Val2202Ile	p.V2202I	ENST00000263388	NM_000435.2	2202	Gtc/Atc																																																																														
AR	0	MSKCC	GRCh37	X	66765182	66765182	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023839-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			274	15	131	0	ENST00000374690.3:c.194A>T	p.Gln65Leu	p.Q65L	ENST00000374690	NM_000044.3	65	cAg/cTg																																																																														
MGA	0	MSKCC	GRCh37	15	42058201	42058201	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023839-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			216	29	252	0	ENST00000219905.7:c.7922-1G>A		p.X2641_splice	ENST00000219905	NM_001164273.1	2641																																																																															
SMARCA4	0	MSKCC	GRCh37	19	11170723	11170723	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023839-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			736	64	755	2	ENST00000344626.4:c.4771C>T	p.Arg1591Trp	p.R1591W	ENST00000344626	NM_003072.3	1591	Cgg/Tgg																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128201287	128201287	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023839-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			608	61	607	0	ENST00000265960.3:c.1448A>C	p.Asn483Thr	p.N483T	ENST00000265960	NM_001006617.1	483	aAc/aCc																																																																														
NTRK2	0	MSKCC	GRCh37	9	87317273	87317273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	39	598	0	ENST00000277120.3:c.298G>A	p.Asp100Asn	p.D100N	ENST00000277120		100	Gat/Aat																																																																														
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	15	239	1				ENST00000310581	NM_198253.2																																																																																
H3F3C	0	MSKCC	GRCh37	12	31944947	31944947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	21	403	0	ENST00000340398.3:c.154C>T	p.Arg52Cys	p.R52C	ENST00000340398	NM_001013699.2	52	Cgt/Tgt																																																																														
IRS2	0	MSKCC	GRCh37	13	110435399	110435399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	29	525	0	ENST00000375856.3:c.3002C>T	p.Ser1001Phe	p.S1001F	ENST00000375856	NM_003749.2	1001	tCc/tTc																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26046038	26046038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	27	290	0	ENST00000540144.1:c.400G>A	p.Glu134Lys	p.E134K	ENST00000540144	NM_003531.2	134	Gaa/Aaa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509849	106509849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	39	618	0	ENST00000359195.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000359195	NM_002649.2	615	Gaa/Aaa																																																																														
ARAF	0	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	30	754	0	ENST00000377045.4:c.641C>T	p.Ser214Phe	p.S214F	ENST00000377045	NM_001654.4	214	tCc/tTc																																																																														
RAD50	0	MSKCC	GRCh37	5	131915055	131915055	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	36	599	1	ENST00000265335.6:c.412C>T	p.Arg138Ter	p.R138*	ENST00000265335		138	Cga/Tga																																																																														
ROS1	0	MSKCC	GRCh37	6	117714448	117714448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	42	589	0	ENST00000368508.3:c.1201G>A	p.Glu401Lys	p.E401K	ENST00000368508	NM_002944.2	401	Gag/Aag																																																																														
FLT4	0	MSKCC	GRCh37	5	180050958	180050958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	32	790	0	ENST00000261937.6:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000261937	NM_182925.4	509	Gag/Aag																																																																														
PREX2	0	MSKCC	GRCh37	8	69031699	69031699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	37	692	1	ENST00000288368.4:c.3454C>T	p.His1152Tyr	p.H1152Y	ENST00000288368	NM_024870.2	1152	Cat/Tat																																																																														
SOS1	0	MSKCC	GRCh37	2	39222510	39222510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	34	565	1	ENST00000402219.2:c.3100C>T	p.Pro1034Ser	p.P1034S	ENST00000402219	NM_005633.3	1034	Ccc/Tcc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164709	36164709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	30	609	1	ENST00000300305.3:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000300305		389	tCg/tTg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937048	36937048	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	54	502	0	ENST00000361632.4:c.1271T>C	p.Phe424Ser	p.F424S	ENST00000361632		424	tTc/tCc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851402	156851402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	32	701	0	ENST00000524377.1:c.2359G>A	p.Ala787Thr	p.A787T	ENST00000524377	NM_002529.3	787	Gca/Aca																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344275	118344275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	24	508	0	ENST00000534358.1:c.2401C>T	p.His801Tyr	p.H801Y	ENST00000534358	NM_005933.3	801	Cat/Tat																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375782	118375782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	31	563	1	ENST00000534358.1:c.9175C>T	p.Pro3059Ser	p.P3059S	ENST00000534358	NM_005933.3	3059	Ccg/Tcg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444382	49444382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	28	648	0	ENST00000301067.7:c.2989C>T	p.Pro997Ser	p.P997S	ENST00000301067	NM_003482.3	997	Ccc/Tcc																																																																														
FLT3	0	MSKCC	GRCh37	13	28608279	28608279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	39	722	1	ENST00000241453.7:c.1777G>A	p.Asp593Asn	p.D593N	ENST00000241453	NM_004119.2	593	Gat/Aat																																																																														
NF1	0	MSKCC	GRCh37	17	29683996	29683996	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	36	674	0	ENST00000358273.4:c.7757C>A	p.Ser2586Ter	p.S2586*	ENST00000358273	NM_001042492.2	2586	tCa/tAa																																																																														
BRIP1	0	MSKCC	GRCh37	17	59858208	59858208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	36	551	0	ENST00000259008.2:c.1787C>T	p.Pro596Leu	p.P596L	ENST00000259008	NM_032043.2	596	cCa/cTa																																																																														
RPTOR	0	MSKCC	GRCh37	17	78796963	78796963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	34	569	0	ENST00000306801.3:c.1076C>T	p.Ser359Leu	p.S359L	ENST00000306801	NM_020761.2	359	tCg/tTg																																																																														
CIC	0	MSKCC	GRCh37	19	42794728	42794728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	34	666	0	ENST00000575354.2:c.1808C>T	p.Pro603Leu	p.P603L	ENST00000575354	NM_015125.3	603	cCc/cTc																																																																														
XPO1	0	MSKCC	GRCh37	2	61721066	61721066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	41	607	0	ENST00000401558.2:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000401558	NM_003400.3	403	cCt/cTt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198265010	198265010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	57	429	0	ENST00000335508.6:c.2867C>T	p.Ser956Phe	p.S956F	ENST00000335508	NM_012433.2	956	tCt/tTt																																																																														
CTLA4	0	MSKCC	GRCh37	2	204732774	204732774	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	35	460	0	ENST00000302823.3:c.109G>A	p.Ala37Thr	p.A37T	ENST00000302823	NM_005214.4	37	Gca/Aca																																																																														
BARD1	0	MSKCC	GRCh37	2	215645955	215645955	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	41	563	0	ENST00000260947.4:c.643A>C	p.Asn215His	p.N215H	ENST00000260947	NM_000465.2	215	Aac/Cac																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793358	242793358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	36	734	1	ENST00000334409.5:c.719C>T	p.Pro240Leu	p.P240L	ENST00000334409	NM_005018.2	240	cCc/cTc																																																																														
PAK7	0	MSKCC	GRCh37	20	9525099	9525099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	31	645	0	ENST00000353224.5:c.1786G>A	p.Glu596Lys	p.E596K	ENST00000353224	NM_177990.2	596	Gag/Aag																																																																														
PTPRT	0	MSKCC	GRCh37	20	41076880	41076880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	29	556	1	ENST00000373198.4:c.1540G>A	p.Gly514Arg	p.G514R	ENST00000373198	NM_133170.3	514	Ggg/Agg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138433429	138433429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	48	687	1	ENST00000289153.2:c.1183C>T	p.Pro395Ser	p.P395S	ENST00000289153	NM_006219.2	395	Cca/Tca																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191494	185191494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	38	752	0	ENST00000265026.3:c.2375C>T	p.Thr792Ile	p.T792I	ENST00000265026	NM_004721.4	792	aCc/aTc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1805462	1805462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	33	744	1	ENST00000260795.2:c.974C>T	p.Ser325Phe	p.S325F	ENST00000260795		325	tCc/tTc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188788	32188788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	28	704	0	ENST00000375023.3:c.766G>A	p.Asp256Asn	p.D256N	ENST00000375023	NM_004557.3	256	Gac/Aac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402812	139402812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	41	710	1	ENST00000277541.6:c.3197C>T	p.Ser1066Leu	p.S1066L	ENST00000277541	NM_017617.3	1066	tCg/tTg																																																																														
BCOR	0	MSKCC	GRCh37	X	39921577	39921577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	38	653	0	ENST00000378444.4:c.4243G>A	p.Glu1415Lys	p.E1415K	ENST00000378444	NM_001123385.1	1415	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	58	706	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715619	30715619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	30	413	0	ENST00000359013.4:c.1352C>T	p.Ala451Val	p.A451V	ENST00000359013	NM_001024847.2	451	gCt/gTt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	230	930	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
FLT1	0	MSKCC	GRCh37	13	29012465	29012465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	35	683	0	ENST00000282397.4:c.406G>A	p.Val136Ile	p.V136I	ENST00000282397	NM_002019.4	136	Gta/Ata																																																																														
TP53	0	MSKCC	GRCh37	17	7578250	7578250	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	43	880	0	ENST00000269305.4:c.599delA	p.Asn200IlefsTer47	p.N200Ifs*47	ENST00000269305	NM_001126112.2	200	aAt/at																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730910	40730910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	34	666	3	ENST00000373198.4:c.3625C>T	p.Arg1209Trp	p.R1209W	ENST00000373198	NM_133170.3	1209	Cgg/Tgg																																																																														
TET1	0	MSKCC	GRCh37	10	70446262	70446262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	38	631	0	ENST00000373644.4:c.5202C>G	p.Ile1734Met	p.I1734M	ENST00000373644	NM_030625.2	1734	atC/atG																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021251	31021251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	34	648	0	ENST00000375687.4:c.1250G>A	p.Arg417Gln	p.R417Q	ENST00000375687	NM_015338.5	417	cGa/cAa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111420	56111420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	93	399	0	ENST00000399503.3:c.20A>G	p.Asn7Ser	p.N7S	ENST00000399503	NM_005921.1	7	aAt/aGt																																																																														
AXIN1	0	MSKCC	GRCh37	16	359972	359972	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0024343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	324	739	15	ENST00000262320.3:c.1116+1G>A		p.X372_splice	ENST00000262320	NM_003502.3	372																																																																															
PALB2	0	MSKCC	GRCh37	16	23647182	23647182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	431	1089	3	ENST00000261584.4:c.685C>G	p.Pro229Ala	p.P229A	ENST00000261584	NM_024675.3	229	Cca/Gca																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24176336	24176336	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024343-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	378	926	12	ENST00000263121.7:c.1127G>C	p.Arg376Thr	p.R376T	ENST00000263121	NM_003073.3	376	aGg/aCg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	75	661	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18793433	18793433	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202143029		P-0024431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	61	446	0	ENST00000266497.5:c.4130G>A	p.Arg1377His	p.R1377H	ENST00000266497		1377	cGt/cAt																																																																														
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	222	502	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72923738	72923738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	197	792	2	ENST00000268489.5:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000268489	NM_006885.3	1114	Cga/Tga																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31375049	31375049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	145	737	0	ENST00000328111.2:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000328111	NM_006892.3	149	cGg/cAg																																																																														
NBN	0	MSKCC	GRCh37	8	90967757	90967757	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	206	345	0	ENST00000265433.3:c.1151T>A	p.Ile384Asn	p.I384N	ENST00000265433	NM_002485.4	384	aTc/aAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	149	821	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NRAS	0	MSKCC	GRCh37	1	115256510	115256510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	48	924	1	ENST00000369535.4:c.201G>A	p.Met67Ile	p.M67I	ENST00000369535	NM_002524.4	67	atG/atA																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0024462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	132	572	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
LATS2	0	MSKCC	GRCh37	13	21562345	21562345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	72	840	0	ENST00000382592.4:c.1574G>A	p.Arg525His	p.R525H	ENST00000382592	NM_014572.2	525	cGc/cAc																																																																														
ATM	0	MSKCC	GRCh37	11	108121525	108121525	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	155	659	0	ENST00000278616.4:c.1333C>T	p.Gln445Ter	p.Q445*	ENST00000278616	NM_000051.3	445	Caa/Taa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522598	157522598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	228	681	2	ENST00000346085.5:c.4870C>T	p.Arg1624Ter	p.R1624*	ENST00000346085	NM_020732.3	1624	Cga/Tga																																																																														
RUNX1	0	MSKCC	GRCh37	21	36231783	36231783	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	251	765	1	ENST00000300305.3:c.601C>T	p.Arg201Ter	p.R201*	ENST00000300305		201	Cga/Tga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482425	56482425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	207	556	0	ENST00000267101.3:c.973G>A	p.Gly325Arg	p.G325R	ENST00000267101	NM_001982.3	325	Gga/Aga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101273	27101273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	220	640	1	ENST00000324856.7:c.4555C>T	p.Gln1519Ter	p.Q1519*	ENST00000324856	NM_006015.4	1519	Cag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878530	151878530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	229	707	0	ENST00000262189.6:c.6415C>T	p.Arg2139Ter	p.R2139*	ENST00000262189	NM_170606.2	2139	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106211	27106566	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAGGACGAACCCCACAGTAAGGATGAGACCCCACTGTGTACCCTTCTGGACTGGCAGGATTCTCTTGCCAAGCGCTGCGTCTGTGTGTCCAATACCATTCGAAGCCTGTCATTTGTGCCAGGCAATGACTTTGAGATGTCCAAACACCCAGGGCTGCTGCTCATCCTGGGCAAGCTGATCCTGCTGCACCACAAGCACCCAGAACGGAAGCAGGCACCACTAACTTATGAAAAGGAGGAGGAACAGGACCAAGGGGTGAGCTGCAACAAAGTGGAGTGGTGGTGGGACTGCTTGGAGATGCTCCGGGAAAAC	TTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAGGACGAACCCCACAGTAAGGATGAGACCCCACTGTGTACCCTTCTGGACTGGCAGGATTCTCTTGCCAAGCGCTGCGTCTGTGTGTCCAATACCATTCGAAGCCTGTCATTTGTGCCAGGCAATGACTTTGAGATGTCCAAACACCCAGGGCTGCTGCTCATCCTGGGCAAGCTGATCCTGCTGCACCACAAGCACCCAGAACGGAAGCAGGCACCACTAACTTATGAAAAGGAGGAGGAACAGGACCAAGGGGTGAGCTGCAACAAAGTGGAGTGGTGGTGGGACTGCTTGGAGATGCTCCGGGAAAAC	-			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	201	631	1	ENST00000324856.7:c.5822_6177del	p.Phe1941TyrfsTer39	p.F1941Yfs*39	ENST00000324856	NM_006015.4	1941	tTTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAGGACGAACCCCACAGTAAGGATGAGACCCCACTGTGTACCCTTCTGGACTGGCAGGATTCTCTTGCCAAGCGCTGCGTCTGTGTGTCCAATACCATTCGAAGCCTGTCATTTGTGCCAGGCAATGACTTTGAGATGTCCAAACACCCAGGGCTGCTGCTCATCCTGGGCAAGCTGATCCTGCTGCACCACAAGCACCCAGAACGGAAGCAGGCACCACTAACTTATGAAAAGGAGGAGGAACAGGACCAAGGGGTGAGCTGCAACAAAGTGGAGTGGTGGTGGGACTGCTTGGAGATGCTCCGGGAAAAC/t																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226769	2226769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	256	726	0	ENST00000398665.3:c.4249G>A	p.Glu1417Lys	p.E1417K	ENST00000398665	NM_032482.2	1417	Gag/Aag																																																																														
ERCC3	0	MSKCC	GRCh37	2	128047034	128047034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	210	641	1	ENST00000285398.2:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000285398	NM_000122.1	234	cGa/cAa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247280	153247280	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	203	448	0	ENST00000281708.4:c.1522C>T	p.Gln508Ter	p.Q508*	ENST00000281708	NM_033632.3	508	Caa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112111372	112111373	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	83	307	0	ENST00000257430.4:c.469_470del	p.Trp157ValfsTer10	p.W157Vfs*10	ENST00000257430	NM_000038.5	157	TGg/g																																																																														
APC	0	MSKCC	GRCh37	5	112173685	112173685	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	150	391	0	ENST00000257430.4:c.2395del	p.Tyr799MetfsTer21	p.Y799Mfs*21	ENST00000257430	NM_000038.5	798	gaT/ga																																																																														
MET	0	MSKCC	GRCh37	7	116397827	116397827	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0024465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	151	577	0	ENST00000397752.3:c.2101A>G	p.Ser701Gly	p.S701G	ENST00000397752	NM_000245.2	701	Agt/Ggt																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	61	334	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
BRAF	0	MSKCC	GRCh37	7	140477873	140477873	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	86	573	0	ENST00000288602.6:c.1435G>A	p.Asp479Asn	p.D479N	ENST00000288602	NM_004333.4	479	Gat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	155	713	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MGA	0	MSKCC	GRCh37	15	42005479	42005479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	182	791	1	ENST00000219905.7:c.3215G>A	p.Arg1072His	p.R1072H	ENST00000219905	NM_001164273.1	1072	cGc/cAc																																																																														
JAK1	0	MSKCC	GRCh37	1	65313274	65313274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	170	732	1	ENST00000342505.4:c.1840G>A	p.Glu614Lys	p.E614K	ENST00000342505	NM_002227.2	614	Gag/Aag																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279949	18279949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	634	913	0	ENST00000222254.8:c.2032G>T	p.Gly678Cys	p.G678C	ENST00000222254	NM_005027.3	678	Ggc/Tgc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259408	89259408	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	173	636	2	ENST00000336596.2:c.552A>T	p.Gln184His	p.Q184H	ENST00000336596	NM_005233.5	184	caA/caT																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101911529	101911529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024467-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	90	517	0	ENST00000374994.4:c.1454del	p.Ala485AspfsTer62	p.A485Dfs*62	ENST00000374994	NM_004612.2	485	gCa/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	67	857	1	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																																																														
RAD51D	0	MSKCC	GRCh37	17	33428344	33428344	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	82	739	1	ENST00000335858.7:c.443T>A	p.Leu148His	p.L148H	ENST00000335858	NM_133629.2	148	cTc/cAc																																																																														
AGO2	0	MSKCC	GRCh37	8	141551243	141551371	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTTCCAAGAGGCGCCCACCTGCTGGAACTGGCCTTCAGAGACACCGTCGCGGTAGAAGATGATGCGGGTGGGCTTGAAGCGCGTGGACTTGTAGAACTGGATGAGGAGCTCGCGGACCATGGCGGCC	AGGTTCCAAGAGGCGCCCACCTGCTGGAACTGGCCTTCAGAGACACCGTCGCGGTAGAAGATGATGCGGGTGGGCTTGAAGCGCGTGGACTTGTAGAACTGGATGAGGAGCTCGCGGACCATGGCGGCC	-			P-0024469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	61	609	0	ENST00000220592.5:c.1926_2034+20del		p.X642_splice	ENST00000220592	NM_012154.3	642																																																																															
TERT	0	MSKCC	GRCh37	5	1295228	1295234	+	upstream_gene_variant	5'Flank	ONP	GGGGGCT	GGGGGCT	AGGGGCA			P-0024469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	43	450	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			5	460	738	2	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
RB1	0	MSKCC	GRCh37	13	49039385	49039385	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	592	752	0	ENST00000267163.4:c.2370C>A	p.Tyr790Ter	p.Y790*	ENST00000267163	NM_000321.2	790	taC/taA																																																																														
SOX9	0	MSKCC	GRCh37	17	70120019	70120031	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCGCCGCCAC	GCGCCGCCGCCAC	-			P-0024473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	103	110	0	ENST00000245479.2:c.1021_1033del	p.Ala341ProfsTer38	p.A341Pfs*38	ENST00000245479	NM_000346.3	341	GCGCCGCCGCCACcc/cc																																																																														
RASA1	0	MSKCC	GRCh37	5	86681152	86681152	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	168	459	0	ENST00000274376.6:c.2793A>G	p.Ile931Met	p.I931M	ENST00000274376	NM_002890.2	931	atA/atG																																																																														
KMT2C	0	MSKCC	GRCh37	7	151917682	151917682	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	290	319	0	ENST00000262189.6:c.3638G>C	p.Ser1213Thr	p.S1213T	ENST00000262189	NM_170606.2	1213	aGc/aCc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139393422	139393425	+	frameshift_variant	Frame_Shift_Del	DEL	CGGC	CGGC	AGG			P-0024473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	229	756	4	ENST00000277541.6:c.6106_6109delinsCCT	p.Ala2036ProfsTer3	p.A2036Pfs*3	ENST00000277541	NM_017617.3	2036	GCCGcc/CCTcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	784	553	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	0	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	146	607	1	ENST00000269305.4:c.792_794delACT	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988379	36988379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	135	339	0	ENST00000354822.5:c.274G>T	p.Gly92Cys	p.G92C	ENST00000354822	NM_001079668.2	92	Ggc/Tgc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15289844	15289844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	301	842	0	ENST00000263388.2:c.3710G>A	p.Gly1237Asp	p.G1237D	ENST00000263388	NM_000435.2	1237	gGc/gAc																																																																														
TAP2	0	MSKCC	GRCh37	6	32805979	32805979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	269	833	0	ENST00000374899.4:c.32C>T	p.Ser11Phe	p.S11F	ENST00000374899	NM_018833.2	11	tCc/tTc																																																																														
PARK2	0	MSKCC	GRCh37	6	163148698	163148698	+	start_lost	Translation_Start_Site	SNP	C	C	G			P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	73	566	0	ENST00000366898.1:c.3G>C	p.Met1?	p.M1?	ENST00000366898	NM_004562.2	1	atG/atC																																																																														
TP53	0	MSKCC	GRCh37	17	7577545	7577551	+	protein_altering_variant	In_Frame_Del	DEL	TGCCGCC	TGCCGCC	A			P-0024480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	616	728	0	ENST00000269305.4:c.730_736delinsT	p.Gly244_Met246delinsLeu	p.G244_M246delinsL	ENST00000269305	NM_001126112.2	244	GGCGGCAtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	450	1095	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9776541	9776541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	386	1103	2	ENST00000377346.4:c.644C>T	p.Ala215Val	p.A215V	ENST00000377346	NM_005026.3	215	gCg/gTg																																																																														
POLE	0	MSKCC	GRCh37	12	133249290	133249291	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0024543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	114	1215	0	ENST00000320574.5:c.1608_1609del	p.Glu537AspfsTer24	p.E537Dfs*24	ENST00000320574	NM_006231.2	536	tcTGag/tcag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15300216	15300216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	432	1150	1	ENST00000263388.2:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000263388	NM_000435.2	354	Gcc/Acc																																																																														
MST1R	0	MSKCC	GRCh37	3	49935005	49935005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	162	1044	1	ENST00000296474.3:c.1994G>T	p.Gly665Val	p.G665V	ENST00000296474	NM_002447.2	665	gGc/gTc																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158432	26158432	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	145	1125	0	ENST00000289316.2:c.35A>G	p.Lys12Arg	p.K12R	ENST00000289316	NM_138720.2	12	aAg/aGg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859266	151859266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	215	761	0	ENST00000262189.6:c.11396G>T	p.Cys3799Phe	p.C3799F	ENST00000262189	NM_170606.2	3799	tGt/tTt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061184	38061187	+	frameshift_variant	Frame_Shift_Del	DEL	CGCA	CGCA	-			P-0024545-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	92	753	2	ENST00000250448.2:c.802_805del	p.Cys268ArgfsTer52	p.C268Rfs*52	ENST00000250448	NM_004496.3	268	TGCGag/ag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	469	922	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0024552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	398	996	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484146	8484146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	159	794	0	ENST00000356435.5:c.3386C>G	p.Pro1129Arg	p.P1129R	ENST00000356435		1129	cCt/cGt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123298142	123298142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	413	823	2	ENST00000358487.5:c.712G>A	p.Gly238Arg	p.G238R	ENST00000358487	NM_000141.4	238	Ggg/Agg																																																																														
ATM	0	MSKCC	GRCh37	11	108199878	108199878	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	174	393	0	ENST00000278616.4:c.7220C>A	p.Ser2407Ter	p.S2407*	ENST00000278616	NM_000051.3	2407	tCa/tAa																																																																														
CDK6	0	MSKCC	GRCh37	7	92354938	92354938	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0024554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	98	355	0	ENST00000265734.4:c.537+2T>C		p.X179_splice	ENST00000265734	NM_001259.6	179																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0024418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	254	545	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	203	372	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	173	380	1	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																																																														
SOX9	0	MSKCC	GRCh37	17	70120258	70120259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	289	724	0	ENST00000245479.2:c.1261dupA	p.Ser421LysfsTer157	p.S421Kfs*157	ENST00000245479	NM_000346.3	420	-/A																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380352	14380352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	73	290	2	ENST00000256196.4:c.65G>T	p.Gly22Val	p.G22V	ENST00000256196		22	gGg/gTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123676	11123676	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	261	568	0	ENST00000344626.4:c.2326A>C	p.Ile776Leu	p.I776L	ENST00000344626	NM_003072.3	776	Atc/Ctc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589532	67589598	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTAGGATCAAGTTGTCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACAC	TCTAGGATCAAGTTGTCAAAGAAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACAC	-			P-0024418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	118	193	0	ENST00000274335.5:c.1300-3_1363del		p.X434_splice	ENST00000274335		434																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	79	518	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936103	178936103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	98	609	0	ENST00000263967.3:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000263967	NM_006218.2	549	Gat/Aat																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178948044	178948044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	34	286	0	ENST00000263967.3:c.2816A>G	p.Asp939Gly	p.D939G	ENST00000263967	NM_006218.2	939	gAt/gGt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252955	36252955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	66	424	0	ENST00000300305.3:c.407A>G	p.Asn136Ser	p.N136S	ENST00000300305		136	aAt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	35	460	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	118	552	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	11	343	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	11	181	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	86	432	1	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg																																																																														
ALK	0	MSKCC	GRCh37	2	29446329	29446329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	113	491	0	ENST00000389048.3:c.3238C>G	p.Leu1080Val	p.L1080V	ENST00000389048	NM_004304.4	1080	Ctg/Gtg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145739910	145739910	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0024423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	32	350	0	ENST00000428558.2:c.1621-1G>T		p.X541_splice	ENST00000428558	NM_004260.3	541																																																																															
CIC	0	MSKCC	GRCh37	19	42796331	42796331	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	359	983	1	ENST00000575354.2:c.2980C>T	p.Gln994Ter	p.Q994*	ENST00000575354	NM_015125.3	994	Cag/Tag																																																																														
SPEN	0	MSKCC	GRCh37	1	16257338	16257338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	241	587	0	ENST00000375759.3:c.4603A>G	p.Ile1535Val	p.I1535V	ENST00000375759	NM_015001.2	1535	Atc/Gtc																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	52	155	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
TP53	0	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	297	366	0	ENST00000269305.4:c.375+2T>C		p.X125_splice	ENST00000269305	NM_001126112.2	125																																																																															
APC	0	MSKCC	GRCh37	5	112174266	112174267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	119	268	0	ENST00000257430.4:c.2976dupT	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	992	agt/agTt																																																																														
ELF3	0	MSKCC	GRCh37	1	201982956	201982956	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	312	451	0	ENST00000359651.3:c.806-1G>A		p.X269_splice	ENST00000359651		269																																																																															
INPP4A	0	MSKCC	GRCh37	2	99136563	99136563	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	251	510	0	ENST00000074304.5:c.52C>T	p.Gln18Ter	p.Q18*	ENST00000074304	NM_001134224.1	18	Cag/Tag																																																																														
SHQ1	0	MSKCC	GRCh37	3	72897423	72897424	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	216	296	0	ENST00000325599.8:c.68dup	p.Tyr23Ter	p.Y23*	ENST00000325599	NM_018130.2	23	tac/taAc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372145	55372145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	179	435	0	ENST00000297316.4:c.835G>A	p.Ala279Thr	p.A279T	ENST00000297316	NM_022454.3	279	Gcg/Acg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	110	565	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0024432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	85	399	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
CBFB	0	MSKCC	GRCh37	16	67100622	67100622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	80	459	0	ENST00000412916.2:c.320G>A	p.Cys107Tyr	p.C107Y	ENST00000412916		107	tGt/tAt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151856142	151856142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	78	347	1	ENST00000262189.6:c.11476C>T	p.Gln3826Ter	p.Q3826*	ENST00000262189	NM_170606.2	3826	Caa/Taa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0024362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	48	560	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
CYLD	0	MSKCC	GRCh37	16	50828250	50828250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024362-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	22	364	0	ENST00000398568.2:c.2588G>A	p.Cys863Tyr	p.C863Y	ENST00000398568	NM_001042412.1	863	tGc/tAc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267400	198267400	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	178	505	1	ENST00000335508.6:c.1957A>C	p.Lys653Gln	p.K653Q	ENST00000335508	NM_012433.2	653	Aaa/Caa																																																																														
ARAF	0	MSKCC	GRCh37	X	47428973	47428973	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	262	669	0	ENST00000377045.4:c.1336G>C	p.Gly446Arg	p.G446R	ENST00000377045	NM_001654.4	446	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	170	685	2	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981803	201981803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	101	611	0	ENST00000359651.3:c.514G>T	p.Asp172Tyr	p.D172Y	ENST00000359651		172	Gac/Tac																																																																														
PTEN	0	MSKCC	GRCh37	10	89653785	89653785	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	52	298	0	ENST00000371953.3:c.83T>G	p.Ile28Ser	p.I28S	ENST00000371953	NM_000314.4	28	aTt/aGt																																																																														
XPO1	0	MSKCC	GRCh37	2	61719561	61719561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	32	439	0	ENST00000401558.2:c.1622C>A	p.Ala541Glu	p.A541E	ENST00000401558	NM_003400.3	541	gCa/gAa																																																																														
APC	0	MSKCC	GRCh37	5	112173887	112173887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	80	294	0	ENST00000257430.4:c.2596G>A	p.Ala866Thr	p.A866T	ENST00000257430	NM_000038.5	866	Gca/Aca																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0024370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	153	617	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257570	19257570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	105	626	1	ENST00000162023.5:c.656G>A	p.Arg219Gln	p.R219Q	ENST00000162023		219	cGa/cAa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5245820	5245820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024370-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	147	759	2	ENST00000357368.4:c.955G>A	p.Val319Ile	p.V319I	ENST00000357368	NM_002850.3	319	Gtc/Atc																																																																														
SPEN	0	MSKCC	GRCh37	1	16256144	16256144	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138355680		P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	271	499	0	ENST00000375759.3:c.3409C>T	p.Arg1137Cys	p.R1137C	ENST00000375759	NM_015001.2	1137	Cgt/Tgt																																																																														
SPEN	0	MSKCC	GRCh37	1	16256750	16256750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	297	542	0	ENST00000375759.3:c.4015C>T	p.Arg1339Cys	p.R1339C	ENST00000375759	NM_015001.2	1339	Cgt/Tgt																																																																														
MPL	0	MSKCC	GRCh37	1	43804212	43804212	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	225	384	0	ENST00000372470.3:c.213-1G>A		p.X71_splice	ENST00000372470	NM_005373.2	71																																																																															
NOTCH2	0	MSKCC	GRCh37	1	120462900	120462900	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	234	327	0	ENST00000256646.2:c.5431C>T	p.Gln1811Ter	p.Q1811*	ENST00000256646	NM_024408.3	1811	Cag/Tag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120465380	120465380	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	285	549	0	ENST00000256646.2:c.4881T>G	p.Ile1627Met	p.I1627M	ENST00000256646	NM_024408.3	1627	atT/atG																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120468219	120468219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	337	608	0	ENST00000256646.2:c.4220C>T	p.Ser1407Leu	p.S1407L	ENST00000256646	NM_024408.3	1407	tCg/tTg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851432	156851432	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	350	760	0	ENST00000524377.1:c.2389T>C	p.Ter797GlnextTer?	p.*797Qext*?	ENST00000524377	NM_002529.3	797	Tag/Cag																																																																														
NUF2	0	MSKCC	GRCh37	1	163297332	163297332	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	247	537	1	ENST00000271452.3:c.178C>T	p.Arg60Ter	p.R60*	ENST00000271452	NM_145697.2	60	Cga/Tga																																																																														
ELF3	0	MSKCC	GRCh37	1	201982096	201982096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	346	647	1	ENST00000359651.3:c.620C>T	p.Ser207Phe	p.S207F	ENST00000359651		207	tCc/tTc																																																																														
PARP1	0	MSKCC	GRCh37	1	226578147	226578147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	248	497	1	ENST00000366794.5:c.581C>T	p.Ala194Val	p.A194V	ENST00000366794	NM_001618.3	194	gCc/gTc																																																																														
RET	0	MSKCC	GRCh37	10	43604617	43604617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	328	590	2	ENST00000355710.3:c.1202G>A	p.Ser401Asn	p.S401N	ENST00000355710	NM_020975.4	401	aGc/aAc																																																																														
RET	0	MSKCC	GRCh37	10	43609939	43609939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	432	763	1	ENST00000355710.3:c.1891G>A	p.Asp631Asn	p.D631N	ENST00000355710	NM_020975.4	631	Gac/Aac																																																																														
TET1	0	MSKCC	GRCh37	10	70333432	70333432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	380	645	1	ENST00000373644.4:c.1337C>T	p.Pro446Leu	p.P446L	ENST00000373644	NM_030625.2	446	cCt/cTt																																																																														
TET1	0	MSKCC	GRCh37	10	70426809	70426809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	201	392	0	ENST00000373644.4:c.4469G>A	p.Arg1490Lys	p.R1490K	ENST00000373644	NM_030625.2	1490	aGa/aAa																																																																														
FGF3	0	MSKCC	GRCh37	11	69625228	69625228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	285	693	0	ENST00000334134.2:c.565G>A	p.Glu189Lys	p.E189K	ENST00000334134	NM_005247.2	189	Gag/Aag																																																																														
SDHD	0	MSKCC	GRCh37	11	111959680	111959680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	279	295	0	ENST00000375549.3:c.259C>T	p.Pro87Ser	p.P87S	ENST00000375549	NM_003002.3	87	Cct/Tct																																																																														
KMT2A	0	MSKCC	GRCh37	11	118307456	118307456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	365	330	0	ENST00000534358.1:c.229G>A	p.Gly77Arg	p.G77R	ENST00000534358	NM_005933.3	77	Gga/Aga																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344458	118344458	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	190	232	0	ENST00000534358.1:c.2584C>T	p.Arg862Ter	p.R862*	ENST00000534358	NM_005933.3	862	Cga/Tga																																																																														
KMT2A	0	MSKCC	GRCh37	11	118372393	118372393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	273	433	0	ENST00000534358.1:c.6326C>T	p.Ser2109Leu	p.S2109L	ENST00000534358	NM_005933.3	2109	tCa/tTa																																																																														
CBL	0	MSKCC	GRCh37	11	119149244	119149244	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	470	540	0	ENST00000264033.4:c.1252T>G	p.Phe418Val	p.F418V	ENST00000264033	NM_005188.3	418	Ttc/Gtc																																																																														
CBL	0	MSKCC	GRCh37	11	119149290	119149290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140627020		P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	316	561	0	ENST00000264033.4:c.1298C>T	p.Pro433Leu	p.P433L	ENST00000264033	NM_005188.3	433	cCg/cTg																																																																														
CBL	0	MSKCC	GRCh37	11	119149298	119149298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	273	536	0	ENST00000264033.4:c.1306C>T	p.Pro436Ser	p.P436S	ENST00000264033	NM_005188.3	436	Cct/Tct																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435490	18435490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	145	240	0	ENST00000266497.5:c.475G>A	p.Glu159Lys	p.E159K	ENST00000266497		159	Gaa/Aaa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18716344	18716344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	212	426	0	ENST00000266497.5:c.3691G>A	p.Glu1231Lys	p.E1231K	ENST00000266497		1231	Gaa/Aaa																																																																														
RECQL	0	MSKCC	GRCh37	12	21643307	21643307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	275	436	0	ENST00000421138.2:c.220C>T	p.Pro74Ser	p.P74S	ENST00000421138		74	Cca/Tca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425522	49425522	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	430	754	0	ENST00000301067.7:c.12966A>T	p.Gln4322His	p.Q4322H	ENST00000301067	NM_003482.3	4322	caA/caT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432458	49432458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	305	661	0	ENST00000301067.7:c.8681C>T	p.Pro2894Leu	p.P2894L	ENST00000301067	NM_003482.3	2894	cCg/cTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444974	49444974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	280	546	1	ENST00000301067.7:c.2492C>T	p.Ser831Leu	p.S831L	ENST00000301067	NM_003482.3	831	tCa/tTa																																																																														
GLI1	0	MSKCC	GRCh37	12	57858984	57858985	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	341	724	3	ENST00000228682.2:c.480_481delinsTT	p.Arg161Trp	p.R161W	ENST00000228682	NM_005269.2	160	gcCCgg/gcTTgg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434362	121434362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	326	575	1	ENST00000257555.6:c.1126C>T	p.Pro376Ser	p.P376S	ENST00000257555		376	Ccc/Tcc																																																																														
LATS2	0	MSKCC	GRCh37	13	21562271	21562271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	378	719	2	ENST00000382592.4:c.1648G>A	p.Glu550Lys	p.E550K	ENST00000382592	NM_014572.2	550	Gag/Aag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911082	32911082	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	209	361	0	ENST00000380152.3:c.2590C>T	p.Gln864Ter	p.Q864*	ENST00000380152		864	Caa/Taa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913305	32913305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	55	525	0	ENST00000380152.3:c.4813G>A	p.Val1605Ile	p.V1605I	ENST00000380152		1605	Gtt/Att																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913531	32913531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	255	441	0	ENST00000380152.3:c.5039C>T	p.Ser1680Phe	p.S1680F	ENST00000380152		1680	tCt/tTt																																																																														
RB1	0	MSKCC	GRCh37	13	49039413	49039413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	386	642	1	ENST00000267163.4:c.2398C>T	p.Pro800Ser	p.P800S	ENST00000267163	NM_000321.2	800	Cct/Tct																																																																														
SMAD3	0	MSKCC	GRCh37	15	67479757	67479757	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	564	533	1	ENST00000327367.4:c.1064C>G	p.Ser355Trp	p.S355W	ENST00000327367	NM_005902.3	355	tCg/tGg																																																																														
AXIN1	0	MSKCC	GRCh37	16	343572	343572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	365	684	0	ENST00000262320.3:c.2102C>T	p.Pro701Leu	p.P701L	ENST00000262320	NM_003502.3	701	cCc/cTc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778347	3778348	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	306	606	0	ENST00000262367.5:c.6700_6701delinsTT	p.Pro2234Phe	p.P2234F	ENST00000262367	NM_004380.2	2234	CCt/TTt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858260	9858261	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	181	393	2	ENST00000330684.3:c.3140_3141delinsTA	p.Lys1047Ile	p.K1047I	ENST00000330684	NM_001134407.1	1047	aAG/aTA																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031999	10032000	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	253	657	1	ENST00000330684.3:c.823_824delinsAA	p.Gly275Lys	p.G275K	ENST00000330684	NM_001134407.1	275	GGa/AAa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10273902	10273902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	400	749	0	ENST00000330684.3:c.367C>T	p.Pro123Ser	p.P123S	ENST00000330684	NM_001134407.1	123	Ccc/Tcc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274175	10274175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	210	395	0	ENST00000330684.3:c.94C>T	p.Pro32Ser	p.P32S	ENST00000330684	NM_001134407.1	32	Ccc/Tcc																																																																														
CDH1	0	MSKCC	GRCh37	16	68847288	68847288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	268	587	0	ENST00000261769.5:c.1210C>T	p.Pro404Ser	p.P404S	ENST00000261769	NM_004360.3	404	Ccc/Tcc																																																																														
GPS2	0	MSKCC	GRCh37	17	7216407	7216407	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	360	680	0	ENST00000380728.2:c.841C>G	p.Pro281Ala	p.P281A	ENST00000380728		281	Cca/Gca																																																																														
TP53	0	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	408	758	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7980036	7980036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	327	603	1	ENST00000319144.4:c.1301C>T	p.Thr434Ile	p.T434I	ENST00000319144	NM_001139.2	434	aCc/aTc																																																																														
NF1	0	MSKCC	GRCh37	17	29509649	29509649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	291	509	1	ENST00000358273.4:c.854C>T	p.Ser285Phe	p.S285F	ENST00000358273	NM_001042492.2	285	tCc/tTc																																																																														
NF1	0	MSKCC	GRCh37	17	29541550	29541550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	266	455	0	ENST00000358273.4:c.1474C>T	p.Leu492Phe	p.L492F	ENST00000358273	NM_001042492.2	492	Ctt/Ttt																																																																														
NF1	0	MSKCC	GRCh37	17	29654784	29654784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	229	337	2	ENST00000358273.4:c.5536C>T	p.Arg1846Trp	p.R1846W	ENST00000358273	NM_001042492.2	1846	Cgg/Tgg																																																																														
CDK12	0	MSKCC	GRCh37	17	37627785	37627785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	370	660	0	ENST00000447079.4:c.1700C>T	p.Pro567Leu	p.P567L	ENST00000447079	NM_015083.1	567	cCt/cTt																																																																														
EZH1	0	MSKCC	GRCh37	17	40858195	40858195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	325	629	1	ENST00000428826.2:c.1669C>T	p.Arg557Cys	p.R557C	ENST00000428826		557	Cgt/Tgt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696399	47696399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	323	574	1	ENST00000347630.2:c.424C>T	p.Leu142Phe	p.L142F	ENST00000347630	NM_001007230.1	142	Ctt/Ttt																																																																														
MSI2	0	MSKCC	GRCh37	17	55335704	55335704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	386	688	0	ENST00000284073.2:c.259G>A	p.Asp87Asn	p.D87N	ENST00000284073	NM_138962.2	87	Gat/Aat																																																																														
BRIP1	0	MSKCC	GRCh37	17	59861739	59861740	+	missense_variant	Missense_Mutation	DNP	AT	AT	GG			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	287	575	1	ENST00000259008.2:c.1519_1520delinsCC	p.Ile507Pro	p.I507P	ENST00000259008	NM_032043.2	507	ATt/CCt																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39576618	39576618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	228	408	0	ENST00000262039.4:c.908C>T	p.Pro303Leu	p.P303L	ENST00000262039	NM_002647.2	303	cCa/cTa																																																																														
SMAD2	0	MSKCC	GRCh37	18	45391457	45391458	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	219	499	0	ENST00000262160.6:c.702_703delinsTT	p.Gln235Ter	p.Q235*	ENST00000262160	NM_005901.5	234	gaCCaa/gaTTaa																																																																														
STK11	0	MSKCC	GRCh37	19	1223006	1223006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	343	594	0	ENST00000326873.7:c.943C>T	p.Pro315Ser	p.P315S	ENST00000326873	NM_000455.4	315	Ccg/Tcg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2216617	2216617	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	415	769	1	ENST00000398665.3:c.2261A>T	p.His754Leu	p.H754L	ENST00000398665	NM_032482.2	754	cAc/cTc																																																																														
GNA11	0	MSKCC	GRCh37	19	3115011	3115012	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	495	919	2	ENST00000078429.4:c.546_547delinsTT	p.Arg183Cys	p.R183C	ENST00000078429	NM_002067.2	182	gtCCgc/gtTTgc																																																																														
GNA11	0	MSKCC	GRCh37	19	3115069	3115069	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	385	818	0	ENST00000078429.4:c.604C>T	p.Arg202Trp	p.R202W	ENST00000078429	NM_002067.2	202	Cgg/Tgg																																																																														
CALR	0	MSKCC	GRCh37	19	13049960	13049960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	282	497	0	ENST00000316448.5:c.104C>T	p.Ser35Phe	p.S35F	ENST00000316448	NM_004343.3	35	tCc/tTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291845	15291845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	399	682	1	ENST00000263388.2:c.2921G>A	p.Gly974Glu	p.G974E	ENST00000263388	NM_000435.2	974	gGg/gAg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36219681	36219682	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	354	661	2	ENST00000222270.7:c.4578_4579delinsTT	p.Leu1527Phe	p.L1527F	ENST00000222270	NM_014727.1	1526	gtCCtt/gtTTtt																																																																														
AXL	0	MSKCC	GRCh37	19	41727910	41727910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	392	648	1	ENST00000301178.4:c.535C>T	p.Pro179Ser	p.P179S	ENST00000301178	NM_021913.4	179	Ccc/Tcc																																																																														
POLD1	0	MSKCC	GRCh37	19	50919752	50919752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	348	725	0	ENST00000440232.2:c.2920C>A	p.Leu974Met	p.L974M	ENST00000440232	NM_002691.3	974	Ctg/Atg																																																																														
ALK	0	MSKCC	GRCh37	2	30143120	30143120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	413	716	1	ENST00000389048.3:c.406C>T	p.Arg136Trp	p.R136W	ENST00000389048	NM_004304.4	136	Cgg/Tgg																																																																														
MSH2	0	MSKCC	GRCh37	2	47702257	47702257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	273	543	1	ENST00000233146.2:c.1853C>T	p.Pro618Leu	p.P618L	ENST00000233146	NM_000251.2	618	cCa/cTa																																																																														
PMS1	0	MSKCC	GRCh37	2	190719307	190719307	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	182	336	1	ENST00000441310.2:c.1309C>T	p.Gln437Ter	p.Q437*	ENST00000441310	NM_000534.4	437	Cag/Tag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248410	212248410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	126	315	0	ENST00000342788.4:c.3857C>T	p.Ser1286Phe	p.S1286F	ENST00000342788	NM_005235.2	1286	tCt/tTt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248684	212248684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	395	393	0	ENST00000342788.4:c.3583C>T	p.Pro1195Ser	p.P1195S	ENST00000342788	NM_005235.2	1195	Cca/Tca																																																																														
PTPRT	0	MSKCC	GRCh37	20	40714426	40714426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	268	535	2	ENST00000373198.4:c.3971C>T	p.Ser1324Phe	p.S1324F	ENST00000373198	NM_133170.3	1324	tCc/tTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40980870	40980870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	274	526	0	ENST00000373198.4:c.1616G>A	p.Arg539Lys	p.R539K	ENST00000373198	NM_133170.3	539	aGg/aAg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62321665	62321665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	321	617	1	ENST00000508582.2:c.2356C>T	p.Arg786Trp	p.R786W	ENST00000508582		786	Cgg/Tgg																																																																														
SETD2	0	MSKCC	GRCh37	3	47164123	47164125	+	stop_gained	Nonsense_Mutation	ONP	GGA	GGA	AGT			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	209	369	0	ENST00000409792.3:c.2001_2003delinsACT	p.Cys667_Pro668delinsTer	p.C667_P668delins*	ENST00000409792	NM_014159.6	667	tgTCCc/tgACTc																																																																														
MST1R	0	MSKCC	GRCh37	3	49940619	49940619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	282	463	1	ENST00000296474.3:c.424C>T	p.Arg142Cys	p.R142C	ENST00000296474	NM_002447.2	142	Cgc/Tgc																																																																														
MITF	0	MSKCC	GRCh37	3	70001029	70001029	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	258	427	0	ENST00000352241.4:c.929A>C	p.His310Pro	p.H310P	ENST00000352241	NM_198159.2	310	cAc/cCc																																																																														
SHQ1	0	MSKCC	GRCh37	3	72799598	72799598	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	286	503	0	ENST00000325599.8:c.1571A>T	p.Lys524Met	p.K524M	ENST00000325599	NM_018130.2	524	aAg/aTg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89498473	89498473	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	196	429	0	ENST00000336596.2:c.2445G>A	p.Trp815Ter	p.W815*	ENST00000336596	NM_005233.5	815	tgG/tgA																																																																														
ATR	0	MSKCC	GRCh37	3	142172047	142172047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	279	569	1	ENST00000350721.4:c.7684C>T	p.Leu2562Phe	p.L2562F	ENST00000350721	NM_001184.3	2562	Ctt/Ttt																																																																														
TP63	0	MSKCC	GRCh37	3	189349307	189349307	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	189	332	0	ENST00000264731.3:c.3G>A	p.Met1?	p.M1?	ENST00000264731	NM_003722.4	1	atG/atA																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55129983	55129983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	344	640	0	ENST00000257290.5:c.517G>A	p.Asp173Asn	p.D173N	ENST00000257290	NM_006206.4	173	Gac/Aac																																																																														
KDR	0	MSKCC	GRCh37	4	55948209	55948209	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	241	453	0	ENST00000263923.4:c.3763-1G>A		p.X1255_splice	ENST00000263923	NM_002253.2	1255																																																																															
KDR	0	MSKCC	GRCh37	4	55956163	55956163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	341	617	3	ENST00000263923.4:c.3152G>A	p.Arg1051Gln	p.R1051Q	ENST00000263923	NM_002253.2	1051	cGg/cAg																																																																														
KDR	0	MSKCC	GRCh37	4	55958805	55958805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	302	544	0	ENST00000263923.4:c.3048G>A	p.Met1016Ile	p.M1016I	ENST00000263923	NM_002253.2	1016	atG/atA																																																																														
KDR	0	MSKCC	GRCh37	4	55960969	55960969	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	183	409	0	ENST00000263923.4:c.2971G>A	p.Ala991Thr	p.A991T	ENST00000263923	NM_002253.2	991	Gct/Act																																																																														
KDR	0	MSKCC	GRCh37	4	55968063	55968063	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	147	348	0	ENST00000263923.4:c.2266+1G>A		p.X756_splice	ENST00000263923	NM_002253.2	756																																																																															
TET2	54790	MSKCC	GRCh37	4	106155526	106155526	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs749618735		P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	143	390	1	ENST00000380013.4:c.427G>A	p.Asp143Asn	p.D143N	ENST00000380013	NM_001127208.2	143	Gat/Aat																																																																														
SDHA	0	MSKCC	GRCh37	5	224476	224476	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	34	45	0	ENST00000264932.6:c.152T>A	p.Ile51Asn	p.I51N	ENST00000264932	NM_004168.2	51	aTt/aAt																																																																														
TERT	0	MSKCC	GRCh37	5	1254606	1254606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	304	479	0	ENST00000310581.5:c.3172G>A	p.Ala1058Thr	p.A1058T	ENST00000310581	NM_198253.2	1058	Gcc/Acc																																																																														
TERT	0	MSKCC	GRCh37	5	1294108	1294108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	400	834	0	ENST00000310581.5:c.893C>T	p.Ser298Phe	p.S298F	ENST00000310581	NM_198253.2	298	tCc/tTc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31429584	31429584	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	176	495	0	ENST00000344624.3:c.3214C>T	p.Pro1072Ser	p.P1072S	ENST00000344624		1072	Ccg/Tcg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526688	31526688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	416	761	0	ENST00000344624.3:c.352C>T	p.Pro118Ser	p.P118S	ENST00000344624		118	Cct/Tct																																																																														
IL7R	0	MSKCC	GRCh37	5	35874562	35874562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	268	443	1	ENST00000303115.3:c.718C>T	p.Pro240Ser	p.P240S	ENST00000303115	NM_002185.3	240	Cct/Tct																																																																														
CSF1R	0	MSKCC	GRCh37	5	149456932	149456932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148357861		P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	318	628	1	ENST00000286301.3:c.796G>A	p.Asp266Asn	p.D266N	ENST00000286301	NM_005211.3	266	Gat/Aat																																																																														
CSF1R	0	MSKCC	GRCh37	5	149460515	149460515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	396	684	0	ENST00000286301.3:c.122G>A	p.Arg41Gln	p.R41Q	ENST00000286301	NM_005211.3	41	cGa/cAa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149497215	149497215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	271	510	2	ENST00000261799.4:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000261799	NM_002609.3	1035	Gag/Aag																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149515352	149515352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	299	563	0	ENST00000261799.4:c.130C>T	p.Leu44Phe	p.L44F	ENST00000261799	NM_002609.3	44	Ctc/Ttc																																																																														
FLT4	0	MSKCC	GRCh37	5	180041106	180041106	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	495	1089	2	ENST00000261937.6:c.3293G>A	p.Trp1098Ter	p.W1098*	ENST00000261937	NM_182925.4	1098	tGg/tAg																																																																														
FLT4	0	MSKCC	GRCh37	5	180052969	180052970	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	385	896	0	ENST00000261937.6:c.1320_1321delinsTT	p.Gln441Ter	p.Q441*	ENST00000261937	NM_182925.4	440	cgCCag/cgTTag																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324472	31324472	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	799	787	0	ENST00000412585.2:c.336C>G	p.Ser112Arg	p.S112R	ENST00000412585	NM_005514.6	112	agC/agG																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163318	32163318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	428	874	1	ENST00000375023.3:c.5908C>T	p.Pro1970Ser	p.P1970S	ENST00000375023	NM_004557.3	1970	Cct/Tct																																																																														
NOTCH4	4855	MSKCC	GRCh37	6	32169975	32169975	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	408	702	0	ENST00000375023.3:c.3633G>A	p.Trp1211Ter	p.W1211*	ENST00000375023	NM_004557.3	1211	tgG/tgA																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188789	32188789	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	349	728	0	ENST00000375023.3:c.765A>T	p.Lys255Asn	p.K255N	ENST00000375023	NM_004557.3	255	aaA/aaT																																																																														
DAXX	0	MSKCC	GRCh37	6	33286913	33286913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	317	634	0	ENST00000374542.5:c.2024C>T	p.Ser675Phe	p.S675F	ENST00000374542	NM_001141970.1	675	tCc/tTc																																																																														
FYN	0	MSKCC	GRCh37	6	112024155	112024155	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	342	549	0	ENST00000368678.4:c.630T>G	p.Asn210Lys	p.N210K	ENST00000368678		210	aaT/aaG																																																																														
ROS1	0	MSKCC	GRCh37	6	117631443	117631443	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	181	301	0	ENST00000368508.3:c.6235G>A	p.Asp2079Asn	p.D2079N	ENST00000368508	NM_002944.2	2079	Gat/Aat																																																																														
ROS1	0	MSKCC	GRCh37	6	117662655	117662655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	250	480	0	ENST00000368508.3:c.4810C>T	p.Pro1604Ser	p.P1604S	ENST00000368508	NM_002944.2	1604	Cct/Tct																																																																														
ROS1	0	MSKCC	GRCh37	6	117730798	117730798	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150941257		P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	267	522	1	ENST00000368508.3:c.236C>T	p.Ser79Leu	p.S79L	ENST00000368508	NM_002944.2	79	tCg/tTg																																																																														
CARD11	0	MSKCC	GRCh37	7	2954874	2954875	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	223	553	2	ENST00000396946.4:c.2835_2836delinsAA	p.Glu946Lys	p.E946K	ENST00000396946	NM_032415.4	945	caGGaa/caAAaa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450325	50450325	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	262	595	0	ENST00000331340.3:c.509A>C	p.Glu170Ala	p.E170A	ENST00000331340	NM_006060.4	170	gAg/gCg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859600	151859600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	239	504	0	ENST00000262189.6:c.11062G>A	p.Asp3688Asn	p.D3688N	ENST00000262189	NM_170606.2	3688	Gat/Aat																																																																														
KMT2C	0	MSKCC	GRCh37	7	151876926	151876926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	134	260	0	ENST00000262189.6:c.7435G>A	p.Gly2479Arg	p.G2479R	ENST00000262189	NM_170606.2	2479	Gga/Aga																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23539056	23539056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	240	467	1	ENST00000380871.4:c.383G>A	p.Arg128Gln	p.R128Q	ENST00000380871	NM_006167.3	128	cGa/cAa																																																																														
PREX2	0	MSKCC	GRCh37	8	68934283	68934283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	527	486	0	ENST00000288368.4:c.349C>T	p.Arg117Cys	p.R117C	ENST00000288368	NM_024870.2	117	Cgt/Tgt																																																																														
PREX2	0	MSKCC	GRCh37	8	68950461	68950461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	576	551	1	ENST00000288368.4:c.773G>A	p.Gly258Glu	p.G258E	ENST00000288368	NM_024870.2	258	gGa/gAa																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981516	70981516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	927	912	0	ENST00000276594.2:c.580C>T	p.Arg194Trp	p.R194W	ENST00000276594	NM_024504.3	194	Cgg/Tgg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981798	70981798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	800	775	0	ENST00000276594.2:c.298C>T	p.Pro100Ser	p.P100S	ENST00000276594	NM_024504.3	100	Ccg/Tcg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8460413	8460413	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	135	273	0	ENST00000356435.5:c.3873A>T	p.Lys1291Asn	p.K1291N	ENST00000356435		1291	aaA/aaT																																																																														
PTPRD	5789	MSKCC	GRCh37	9	8517993	8517993	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	224	420	0	ENST00000356435.5:c.1398G>A	p.Trp466Ter	p.W466*	ENST00000356435		466	tgG/tgA																																																																														
PTCH1	0	MSKCC	GRCh37	9	98231254	98231254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	303	582	0	ENST00000331920.6:c.2029A>G	p.Thr677Ala	p.T677A	ENST00000331920	NM_000264.3	677	Acc/Gcc																																																																														
ABL1	0	MSKCC	GRCh37	9	133759662	133759662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	319	605	0	ENST00000318560.5:c.1985C>T	p.Pro662Leu	p.P662L	ENST00000318560	NM_005157.4	662	cCc/cTc																																																																														
TRAF2	0	MSKCC	GRCh37	9	139804400	139804400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	401	665	0	ENST00000247668.2:c.557C>T	p.Pro186Leu	p.P186L	ENST00000247668	NM_021138.3	186	cCc/cTc																																																																														
ATRX	0	MSKCC	GRCh37	X	76813059	76813059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	312	334	1	ENST00000373344.5:c.6562C>T	p.Arg2188Ter	p.R2188*	ENST00000373344	NM_000489.3	2188	Cga/Tga																																																																														
ATRX	0	MSKCC	GRCh37	X	76938967	76938967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	357	310	1	ENST00000373344.5:c.1781C>T	p.Ser594Phe	p.S594F	ENST00000373344	NM_000489.3	594	tCc/tTc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103527931	103527931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs4150388		P-0024395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	177	428	0	ENST00000355739.4:c.3239G>A	p.Gly1080Glu	p.G1080E	ENST00000355739	NM_000123.3	1080	gGa/gAa																																																																														
KIT	0	MSKCC	GRCh37	4	55593604	55593609	+	inframe_deletion	In_Frame_Del	DEL	GGAAGG	GGAAGG	-			P-0024398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	402	478	0	ENST00000288135.5:c.1670_1675del	p.Trp557_Val559delinsPhe	p.W557_V559delinsF	ENST00000288135	NM_000222.2	557	tGGAAGGtt/ttt																																																																														
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0024398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	595	512	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg																																																																														
KIT	3815	MSKCC	GRCh37	4	55593609	55593609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	19	483	0	ENST00000288135.5:c.1675G>T	p.Val559Phe	p.V559F	ENST00000288135	NM_000222.2	559	Gtt/Ttt																																																																														
PTEN	0	MSKCC	GRCh37	10	89653767	89653780	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	AACTAAAGTACTCA	AACTAAAGTACTCA	TAGTTAAG			P-0024398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	184	341	1	ENST00000371953.3:c.80-15_80-2delinsTAGTTAAG		p.X27_splice	ENST00000371953	NM_000314.4	27																																																																															
ERCC2	0	MSKCC	GRCh37	19	45858101	45858101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	39	503	3	ENST00000391945.4:c.1552C>T	p.Arg518Trp	p.R518W	ENST00000391945	NM_000400.3	518	Cgg/Tgg																																																																														
MET	0	MSKCC	GRCh37	7	116411853	116411877	+	intron_variant	Intron	DEL	GGCCCATGATAGCCGTCTTTAACAA	GGCCCATGATAGCCGTCTTTAACAA	-			P-0024401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	222	812	0	ENST00000397752.3:c.2888-49_2888-25del		p.*963*	ENST00000397752	NM_000245.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0024479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	173	460	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
IGF2	0	MSKCC	GRCh37	11	2154733	2154853	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGGACCCTCACCGGAAGCACGGTCGGAGGGGTCGACACGTCCCTCTCGGACTTGGCGGGGGTAGCACAGTACGTCTCCAGGAGGGCCAGGTCACAGCTGCGGAAACAGCACTCCTCAA	CCCAGGACCCTCACCGGAAGCACGGTCGGAGGGGTCGACACGTCCCTCTCGGACTTGGCGGGGGTAGCACAGTACGTCTCCAGGAGGGCCAGGTCACAGCTGCGGAAACAGCACTCCTCAA	-			P-0024479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	176	753	0	ENST00000434045.2:c.368_474+14del		p.X123_splice	ENST00000434045	NM_001127598.1	123																																																																															
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0024483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	149	388	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
NF1	0	MSKCC	GRCh37	17	29527502	29527503	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0024483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	138	737	0	ENST00000358273.4:c.952_953delGA	p.Glu318LysfsTer11	p.E318Kfs*11	ENST00000358273	NM_001042492.2	317	acAGaa/acaa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522590	176522590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	142	922	2	ENST00000292408.4:c.1687C>T	p.Arg563Trp	p.R563W	ENST00000292408	NM_213647.1	563	Cgg/Tgg																																																																														
DDR2	0	MSKCC	GRCh37	1	162740204	162740204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	327	729	1	ENST00000367921.3:c.1406C>T	p.Ser469Leu	p.S469L	ENST00000367921	NM_006182.2	469	tCg/tTg																																																																														
CIC	0	MSKCC	GRCh37	19	42794793	42794799	+	frameshift_variant	Frame_Shift_Del	DEL	GGAAACA	GGAAACA	TCC			P-0024560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	132	597	1	ENST00000575354.2:c.1873_1879delinsTCC	p.Gly625SerfsTer102	p.G625Sfs*102	ENST00000575354	NM_015125.3	625	GGAAACAtc/TCCtc																																																																														
VHL	0	MSKCC	GRCh37	3	10188233	10188233	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	260	702	0	ENST00000256474.2:c.376del	p.Asp126MetfsTer33	p.D126Mfs*33	ENST00000256474	NM_000551.3	126	Gat/at																																																																														
SMO	0	MSKCC	GRCh37	7	128846384	128846384	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	211	614	0	ENST00000249373.3:c.1220C>G	p.Pro407Arg	p.P407R	ENST00000249373	NM_005631.4	407	cCa/cGa																																																																														
STAG2	0	MSKCC	GRCh37	X	123181241	123181241	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	118	441	0	ENST00000218089.9:c.707del	p.Asn236IlefsTer20	p.N236Ifs*20	ENST00000218089	NM_001042749.1	235	ctA/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	200	688	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	441	797	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	118	247	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852409	63852409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	328	635	0	ENST00000279873.7:c.3187G>A	p.Gly1063Arg	p.G1063R	ENST00000279873	NM_032199.2	1063	Ggg/Agg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120612018	120612018	+	start_lost	Translation_Start_Site	SNP	C	C	G	rs149632008		P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	12	90	0	ENST00000256646.2:c.3G>C	p.Met1?	p.M1?	ENST00000256646	NM_024408.3	1	atG/atC																																																																														
ALK	0	MSKCC	GRCh37	2	29416332	29416332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	163	873	1	ENST00000389048.3:c.4621G>T	p.Val1541Phe	p.V1541F	ENST00000389048	NM_004304.4	1541	Gtc/Ttc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99181178	99181178	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024286-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	149	614	0	ENST00000074304.5:c.2119T>G	p.Tyr707Asp	p.Y707D	ENST00000074304	NM_001134224.1	707	Tac/Gac																																																																														
SDHA	0	MSKCC	GRCh37	5	231001	231001	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143484394		P-0024288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	145	707	0	ENST00000264932.6:c.781C>T	p.Arg261Cys	p.R261C	ENST00000264932	NM_004168.2	261	Cgc/Tgc																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	174	693	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	192	516	3	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	206	392	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	201	580	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	48	493	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	191	411	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	198	590	13	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	257	354	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851754	134851754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56396912		P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	189	515	0	ENST00000398015.3:c.1160C>T	p.Thr387Met	p.T387M	ENST00000398015	NM_004441.4	387	aCg/aTg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	290	622	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	232	742	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	64	538	0	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101417	27101417	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	178	454	0	ENST00000324856.7:c.4703delC	p.Pro1568LeufsTer44	p.P1568Lfs*44	ENST00000324856	NM_006015.4	1567	Ccc/cc																																																																														
NSD1	0	MSKCC	GRCh37	5	176683975	176683975	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	59	586	0	ENST00000439151.2:c.4789A>T	p.Lys1597Ter	p.K1597*	ENST00000439151	NM_022455.4	1597	Aag/Tag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349754	89349755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	272	869	0	ENST00000301030.4:c.3195dup	p.His1066ThrfsTer2	p.H1066Tfs*2	ENST00000301030	NM_001256183.1	1065	-/A																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	181	642	6	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	365	717	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
SETD8	0	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	16	54	0	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																														
SRC	0	MSKCC	GRCh37	20	36030877	36030877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	48	509	1	ENST00000358208.4:c.1156G>A	p.Val386Ile	p.V386I	ENST00000358208		386	Gtc/Atc																																																																														
SPRED1	0	MSKCC	GRCh37	15	38591611	38591611	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	199	494	0	ENST00000299084.4:c.70C>T	p.Arg24Ter	p.R24*	ENST00000299084	NM_152594.2	24	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67660475	67660475	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	230	421	0	ENST00000264010.4:c.1375C>T	p.Gln459Ter	p.Q459*	ENST00000264010	NM_006565.3	459	Cag/Tag																																																																														
EP300	0	MSKCC	GRCh37	22	41574081	41574081	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	29	453	0	ENST00000263253.7:c.6370del	p.Val2124SerfsTer10	p.V2124Sfs*10	ENST00000263253	NM_001429.3	2122	caG/ca																																																																														
SH2B3	0	MSKCC	GRCh37	12	111884833	111884833	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	52	399	0	ENST00000341259.2:c.922C>T	p.Arg308Ter	p.R308*	ENST00000341259	NM_005475.2	308	Cga/Tga																																																																														
AXL	0	MSKCC	GRCh37	19	41749571	41749571	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200850031		P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	57	634	0	ENST00000301178.4:c.1496G>A	p.Arg499His	p.R499H	ENST00000301178	NM_021913.4	499	cGc/cAc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45871940	45871940	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142462393		P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	48	669	0	ENST00000391945.4:c.308C>T	p.Pro103Leu	p.P103L	ENST00000391945	NM_000400.3	103	cCg/cTg																																																																														
MSH6	0	MSKCC	GRCh37	2	48027807	48027807	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	136	412	2	ENST00000234420.5:c.2690del	p.Asn897IlefsTer9	p.N897Ifs*9	ENST00000234420	NM_000179.2	895	acA/ac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36229306	36229306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	46	674	2	ENST00000222270.7:c.7996G>A	p.Val2666Met	p.V2666M	ENST00000222270	NM_014727.1	2666	Gtg/Atg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81953259	81953259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	20	291	0	ENST00000359376.3:c.2225G>A	p.Arg742His	p.R742H	ENST00000359376	NM_002661.3	742	cGc/cAc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120529701	120529701	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	53	468	0	ENST00000256646.2:c.756del	p.Phe252LeufsTer144	p.F252Lfs*144	ENST00000256646	NM_024408.3	252	ttT/tt																																																																														
SMYD3	0	MSKCC	GRCh37	1	246490633	246490633	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	191	362	1	ENST00000388985.4:c.401A>T	p.Asn134Ile	p.N134I	ENST00000388985		134	aAc/aTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692896	89692897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	398	378	0	ENST00000371953.3:c.383dup	p.Arg130ThrfsTer50	p.R130Tfs*50	ENST00000371953	NM_000314.4	127	gga/ggAa																																																																														
INPPL1	0	MSKCC	GRCh37	11	71941843	71941843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	214	537	2	ENST00000298229.2:c.1201C>T	p.Arg401Trp	p.R401W	ENST00000298229	NM_001567.3	401	Cgg/Tgg																																																																														
SESN3	0	MSKCC	GRCh37	11	94924704	94924704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	453	816	0	ENST00000536441.1:c.206C>T	p.Ser69Phe	p.S69F	ENST00000536441	NM_144665.3	69	tCc/tTc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343580	118343580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	206	545	0	ENST00000534358.1:c.1706C>T	p.Pro569Leu	p.P569L	ENST00000534358	NM_005933.3	569	cCg/cTg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56493997	56493997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	204	629	0	ENST00000267101.3:c.3169A>G	p.Met1057Val	p.M1057V	ENST00000267101	NM_001982.3	1057	Atg/Gtg																																																																														
FLT3	0	MSKCC	GRCh37	13	28623674	28623674	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	258	507	0	ENST00000241453.7:c.883G>A	p.Gly295Ser	p.G295S	ENST00000241453	NM_004119.2	295	Ggc/Agc																																																																														
DICER1	0	MSKCC	GRCh37	14	95557704	95557704	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	191	467	0	ENST00000343455.3:c.5365-2A>G		p.X1789_splice	ENST00000343455	NM_177438.2	1789																																																																															
SPRED1	0	MSKCC	GRCh37	15	38545388	38545388	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	256	488	0	ENST00000299084.4:c.2T>C	p.Met1?	p.M1?	ENST00000299084	NM_152594.2	1	aTg/aCg																																																																														
MGA	0	MSKCC	GRCh37	15	42003136	42003137	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	89	686	0	ENST00000219905.7:c.2678dup	p.Val894CysfsTer19	p.V894Cfs*19	ENST00000219905	NM_001164273.1	891	-/C																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821142	72821142	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147553973		P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	324	666	3	ENST00000268489.5:c.11033C>T	p.Pro3678Leu	p.P3678L	ENST00000268489	NM_006885.3	3678	cCg/cTg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821344	72821344	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	105	297	1	ENST00000268489.5:c.10831del	p.His3611ThrfsTer83	p.H3611Tfs*83	ENST00000268489	NM_006885.3	3611	Cac/ac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832056	72832056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	48	540	0	ENST00000268489.5:c.4525G>A	p.Asp1509Asn	p.D1509N	ENST00000268489	NM_006885.3	1509	Gac/Aac																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992952	72992952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	263	834	2	ENST00000268489.5:c.1093del	p.Tyr365MetfsTer31	p.Y365Mfs*31	ENST00000268489	NM_006885.3	365	Tat/at																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89345525	89345525	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	90	346	0	ENST00000301030.4:c.7425del	p.Tyr2476ThrfsTer15	p.Y2476Tfs*15	ENST00000301030	NM_001256183.1	2475	tcC/tc																																																																														
TP53	0	MSKCC	GRCh37	17	7578452	7578452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	229	729	0	ENST00000269305.4:c.478A>G	p.Met160Val	p.M160V	ENST00000269305	NM_001126112.2	160	Atg/Gtg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	147	642	0	ENST00000307078.5:c.1993_1994dupGG	p.Asn666AlafsTer24	p.N666Afs*24	ENST00000307078	NM_004655.3	665	ggc/ggGGc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45371819	45371819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	42	433	0	ENST00000262160.6:c.1172C>T	p.Ala391Val	p.A391V	ENST00000262160	NM_005901.5	391	gCt/gTt																																																																														
JAK3	0	MSKCC	GRCh37	19	17950343	17950343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	310	701	0	ENST00000458235.1:c.1384C>A	p.Leu462Met	p.L462M	ENST00000458235	NM_000215.3	462	Ctg/Atg																																																																														
UPF1	0	MSKCC	GRCh37	19	18967707	18967707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	156	566	3	ENST00000262803.5:c.1846A>G	p.Thr616Ala	p.T616A	ENST00000262803	NM_002911.3	616	Aca/Gca																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223795	36223795	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	137	890	0	ENST00000222270.7:c.6348del	p.Phe2116LeufsTer3	p.F2116Lfs*3	ENST00000222270	NM_014727.1	2115	gaT/ga																																																																														
AXL	0	MSKCC	GRCh37	19	41763510	41763510	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	209	453	0	ENST00000301178.4:c.2309A>G	p.Gln770Arg	p.Q770R	ENST00000301178	NM_021913.4	770	cAg/cGg																																																																														
POLD1	0	MSKCC	GRCh37	19	50905530	50905530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	226	768	1	ENST00000440232.2:c.658G>A	p.Val220Met	p.V220M	ENST00000440232	NM_002691.3	220	Gtg/Atg																																																																														
INHA	0	MSKCC	GRCh37	2	220439679	220439679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	223	698	1	ENST00000243786.2:c.532G>A	p.Val178Met	p.V178M	ENST00000243786	NM_002191.3	178	Gtg/Atg																																																																														
TOP1	0	MSKCC	GRCh37	20	39706276	39706276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	27	240	0	ENST00000361337.2:c.334A>G	p.Ser112Gly	p.S112G	ENST00000361337	NM_003286.2	112	Agt/Ggt																																																																														
RTEL1	0	MSKCC	GRCh37	20	62292848	62292848	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	63	210	0	ENST00000508582.2:c.300A>G	p.Ile100Met	p.I100M	ENST00000508582		100	atA/atG																																																																														
VHL	0	MSKCC	GRCh37	3	10191606	10191606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	42	522	0	ENST00000256474.2:c.599G>A	p.Arg200Gln	p.R200Q	ENST00000256474	NM_000551.3	200	cGg/cAg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52668640	52668640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	265	583	0	ENST00000394830.3:c.1279C>T	p.Pro427Ser	p.P427S	ENST00000394830	NM_018313.4	427	Ccc/Tcc																																																																														
SOX2	0	MSKCC	GRCh37	3	181430639	181430639	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	160	501	1	ENST00000325404.1:c.491A>G	p.Asn164Ser	p.N164S	ENST00000325404	NM_003106.3	164	aAc/aGc																																																																														
TERT	0	MSKCC	GRCh37	5	1294400	1294400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	176	570	4	ENST00000310581.5:c.601C>T	p.Arg201Trp	p.R201W	ENST00000310581	NM_198253.2	201	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112177642	112177643	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	96	354	0	ENST00000257430.4:c.6363_6365dup	p.Ala2122dup	p.A2122dup	ENST00000257430	NM_000038.5	2122	-/GCT																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149504305	149504305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	212	791	1	ENST00000261799.4:c.1897G>A	p.Val633Ile	p.V633I	ENST00000261799	NM_002609.3	633	Gtc/Atc																																																																														
NSD1	0	MSKCC	GRCh37	5	176687121	176687121	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	66	491	1	ENST00000439151.2:c.5098C>T	p.Arg1700Ter	p.R1700*	ENST00000439151	NM_022455.4	1700	Cga/Tga																																																																														
FLT4	0	MSKCC	GRCh37	5	180045854	180045854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	55	588	0	ENST00000261937.6:c.2917C>T	p.Arg973Trp	p.R973W	ENST00000261937	NM_182925.4	973	Cgg/Tgg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32190474	32190474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	189	753	0	ENST00000375023.3:c.265G>T	p.Gly89Trp	p.G89W	ENST00000375023	NM_004557.3	89	Ggg/Tgg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099445	157099450	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	72	359	0	ENST00000346085.5:c.390_395del	p.Gln130_Gln131del	p.Q130_Q131del	ENST00000346085	NM_020732.3	128	CAGCAA/-																																																																														
EGFR	0	MSKCC	GRCh37	7	55214387	55214388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	228	715	1	ENST00000275493.2:c.516dup	p.Leu173SerfsTer19	p.L173Sfs*19	ENST00000275493	NM_005228.3	171	-/T																																																																														
BRAF	0	MSKCC	GRCh37	7	140476734	140476734	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	62	408	1	ENST00000288602.6:c.1672C>T	p.Arg558Ter	p.R558*	ENST00000288602	NM_004333.4	558	Cga/Tga																																																																														
LYN	0	MSKCC	GRCh37	8	56882275	56882275	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	208	519	0	ENST00000519728.1:c.974-1G>T		p.X325_splice	ENST00000519728	NM_002350.3	325																																																																															
TEK	0	MSKCC	GRCh37	9	27168574	27168576	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	222	559	0	ENST00000380036.4:c.453_455del	p.Glu151del	p.E151del	ENST00000380036	NM_000459.3	149	aAAGaa/aaa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87636209	87636209	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201902834		P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	74	407	0	ENST00000277120.3:c.2374C>T	p.Arg792Cys	p.R792C	ENST00000277120		792	Cgc/Tgc																																																																														
ATRX	0	MSKCC	GRCh37	X	76940082	76940082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024289-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	186	475	0	ENST00000373344.5:c.666G>C	p.Trp222Cys	p.W222C	ENST00000373344	NM_000489.3	222	tgG/tgC																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	71	256	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
APC	0	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	117	484	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	390	713	0	ENST00000269305.4:c.737T>C	p.Met246Thr	p.M246T	ENST00000269305	NM_001126112.2	246	aTg/aCg																																																																														
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	97	314	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66765176	66765176	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs62636527		P-0024298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	13	217	1	ENST00000374690.3:c.188A>T	p.Gln63Leu	p.Q63L	ENST00000374690	NM_000044.3	63	cAg/cTg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944250	81944250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147396004		P-0024298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	331	748	0	ENST00000359376.3:c.1859C>T	p.Thr620Met	p.T620M	ENST00000359376	NM_002661.3	620	aCg/aTg																																																																														
TERT	0	MSKCC	GRCh37	5	1279578	1279578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	60	829	1	ENST00000310581.5:c.1958G>A	p.Arg653His	p.R653H	ENST00000310581	NM_198253.2	653	cGt/cAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0024299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	648	493	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	807	849	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	230	351	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120483288	120483288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	243	429	2	ENST00000256646.2:c.3073G>A	p.Glu1025Lys	p.E1025K	ENST00000256646	NM_024408.3	1025	Gag/Aag																																																																														
SMYD3	0	MSKCC	GRCh37	1	246091319	246091319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	117	413	0	ENST00000388985.4:c.616C>G	p.His206Asp	p.H206D	ENST00000388985		206	Cac/Gac																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18715649	18715649	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	159	338	0	ENST00000266497.5:c.3480A>C	p.Glu1160Asp	p.E1160D	ENST00000266497		1160	gaA/gaC																																																																														
RB1	0	MSKCC	GRCh37	13	48955282	48955492	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACCTTTCTACTGTTTTCTTTGTCTGATAATAACTTCCAAAAAAATACCTAGCTCAAGGGTTAATATTTCATAAATAGTTACTTTTTTTTTTCATTTTTAGGAAGTACATCTCAGAATCTTGATTCTGGAACAGATTTGTCTTTCCCATGGATTCTGAATGTGCTTAATTTAAAAGCCTTTGATTTTTACAAAGTGATCGAAAGTTTTATC	AACCTTTCTACTGTTTTCTTTGTCTGATAATAACTTCCAAAAAAATACCTAGCTCAAGGGTTAATATTTCATAAATAGTTACTTTTTTTTTTCATTTTTAGGAAGTACATCTCAGAATCTTGATTCTGGAACAGATTTGTCTTTCCCATGGATTCTGAATGTGCTTAATTTAAAAGCCTTTGATTTTTACAAAGTGATCGAAAGTTTTATC	-			P-0024299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4	136	40	1	ENST00000267163.4:c.1499-99_1610del		p.X500_splice	ENST00000267163	NM_000321.2	500																																																																															
CYLD	0	MSKCC	GRCh37	16	50821744	50821745	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0024299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	105	530	1	ENST00000398568.2:c.2080_2081delinsTT	p.Glu694Leu	p.E694L	ENST00000398568	NM_001042412.1	694	GAa/TTa																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27777910	27777911	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0024299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	174	372	0	ENST00000369163.2:c.59_60del	p.Gln20ProfsTer54	p.Q20Pfs*54	ENST00000369163	NM_003536.2	20	cAG/c																																																																														
MYC	0	MSKCC	GRCh37	8	128752723	128752724	+	missense_variant	Missense_Mutation	DNP	GA	GA	TG			P-0024299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1279	157	289	1	ENST00000377970.2:c.884_885delinsTG	p.Gly295Val	p.G295V	ENST00000377970	NM_002467.4	295	gGA/gTG																																																																														
ABL1	0	MSKCC	GRCh37	9	133750437	133750437	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0024299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	320	585	1	ENST00000318560.5:c.1268G>A	p.Trp423Ter	p.W423*	ENST00000318560	NM_005157.4	423	tGg/tAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	83	192	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	53	641	1				ENST00000310581	NM_198253.2																																																																																
EGFR	0	MSKCC	GRCh37	7	55268970	55268975	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCGA	TGCCGA	CGTC			P-0024396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	124	484	6	ENST00000275493.2:c.3036_3041delinsCGTC	p.Ala1013ValfsTer38	p.A1013Vfs*38	ENST00000275493	NM_005228.3	1012	gaTGCCGAc/gaCGTCc																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	536	458	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
STAT5B	0	MSKCC	GRCh37	17	40370173	40370173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	198	673	1	ENST00000293328.3:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000293328	NM_012448.3	389	Cgc/Tgc																																																																														
MPL	0	MSKCC	GRCh37	1	43812228	43812228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	254	535	0	ENST00000372470.3:c.1093C>A	p.Leu365Ile	p.L365I	ENST00000372470	NM_005373.2	365	Ctt/Att																																																																														
NEGR1	0	MSKCC	GRCh37	1	72241974	72241974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	28	242	0	ENST00000357731.5:c.416C>T	p.Pro139Leu	p.P139L	ENST00000357731	NM_173808.2	139	cCt/cTt																																																																														
IRS2	0	MSKCC	GRCh37	13	110434539	110434539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	366	420	0	ENST00000375856.3:c.3862C>G	p.Arg1288Gly	p.R1288G	ENST00000375856	NM_003749.2	1288	Cga/Gga																																																																														
TP53	0	MSKCC	GRCh37	17	7577052	7577052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	244	565	0	ENST00000269305.4:c.886C>G	p.His296Asp	p.H296D	ENST00000269305	NM_001126112.2	296	Cac/Gac																																																																														
CDK12	0	MSKCC	GRCh37	17	37618462	37618462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	138	349	0	ENST00000447079.4:c.138G>C	p.Lys46Asn	p.K46N	ENST00000447079	NM_015083.1	46	aaG/aaC																																																																														
BRCA1	0	MSKCC	GRCh37	17	41201161	41201161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	173	632	0	ENST00000357654.3:c.5383C>G	p.Leu1795Val	p.L1795V	ENST00000357654	NM_007294.3	1795	Ctt/Gtt																																																																														
TOP1	0	MSKCC	GRCh37	20	39744962	39744962	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	101	388	0	ENST00000361337.2:c.1752G>C	p.Leu584Phe	p.L584F	ENST00000361337	NM_003286.2	584	ttG/ttC																																																																														
SYK	0	MSKCC	GRCh37	9	93629360	93629458	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTATTTGTTTTCTGAAACATTTACTGTTCCTCTTTGCCGTTGTGGTTTCTAGACTTGGTCAGCGGGTGGAATAATCTCAAGAATCAAATCATACTCCT	TGTATTTGTTTTCTGAAACATTTACTGTTCCTCTTTGCCGTTGTGGTTTCTAGACTTGGTCAGCGGGTGGAATAATCTCAAGAATCAAATCATACTCCT	-			P-0024405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	21	166	0	ENST00000375746.1:c.847-52_893del		p.X283_splice	ENST00000375746	NM_001174167.1	283																																																																															
KLF4	0	MSKCC	GRCh37	9	110249753	110249753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	128	452	0	ENST00000374672.4:c.922G>A	p.Gly308Arg	p.G308R	ENST00000374672	NM_004235.4	308	Ggg/Agg																																																																														
MSH2	0	MSKCC	GRCh37	2	47657054	47657069	+	protein_altering_variant	In_Frame_Del	DEL	TTATACAGGCTCTGGA	TTATACAGGCTCTGGA	G			P-0024405-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	31	216	0	ENST00000233146.2:c.1250_1265delinsG	p.Val417_Glu422delinsGly	p.V417_E422delinsG	ENST00000233146	NM_000251.2	417	gTTATACAGGCTCTGGAa/gGa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0024448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	249	807	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																														
ATM	0	MSKCC	GRCh37	11	108139286	108139286	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	32	795	1	ENST00000278616.4:c.2788T>G	p.Leu930Val	p.L930V	ENST00000278616	NM_000051.3	930	Tta/Gta																																																																														
ALK	0	MSKCC	GRCh37	2	29449920	29449920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	174	1017	1	ENST00000389048.3:c.2935G>A	p.Val979Met	p.V979M	ENST00000389048	NM_004304.4	979	Gtg/Atg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066617	94066617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	115	600	0	ENST00000369303.4:c.1142C>A	p.Pro381His	p.P381H	ENST00000369303	NM_004440.3	381	cCc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577595	7577598	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0024450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	197	586	0	ENST00000269305.4:c.683_686delACTG	p.Asp228ValfsTer18	p.D228Vfs*18	ENST00000269305	NM_001126112.2	228	gACTGt/gt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101597	27101597	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs151074395		P-0024450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	30	784	0	ENST00000324856.7:c.4879C>G	p.Pro1627Ala	p.P1627A	ENST00000324856	NM_006015.4	1627	Cct/Gct																																																																														
MDM4	0	MSKCC	GRCh37	1	204499917	204499917	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200898280		P-0024450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	78	516	2	ENST00000367182.3:c.259C>T	p.Arg87Cys	p.R87C	ENST00000367182	NM_001278516.1	87	Cgt/Tgt																																																																														
EP300	0	MSKCC	GRCh37	22	41565592	41565607	+	frameshift_variant	Frame_Shift_Del	DEL	GGATATTTAGAATATG	GGATATTTAGAATATG	-			P-0024450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	78	467	1	ENST00000263253.7:c.4258_4273del	p.Gly1420SerfsTer4	p.G1420Sfs*4	ENST00000263253	NM_001429.3	1420	GGATATTTAGAATATGtc/tc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	98	446	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	175	684	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	93	629	1	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114910883	114910883	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	113	454	4	ENST00000543371.1:c.1001+1G>A		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																															
SPEN	0	MSKCC	GRCh37	1	16258310	16258310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	62	525	2	ENST00000375759.3:c.5575C>T	p.Arg1859Trp	p.R1859W	ENST00000375759	NM_015001.2	1859	Cgg/Tgg																																																																														
RAD51C	0	MSKCC	GRCh37	17	56770125	56770125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	57	416	0	ENST00000337432.4:c.121G>A	p.Val41Met	p.V41M	ENST00000337432	NM_058216.2	41	Gtg/Atg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30664727	30664727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	20	395	0	ENST00000359013.4:c.131G>T	p.Cys44Phe	p.C44F	ENST00000359013	NM_001024847.2	44	tGc/tTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066702	94066702	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	55	531	0	ENST00000369303.4:c.1057C>A	p.Pro353Thr	p.P353T	ENST00000369303	NM_004440.3	353	Cct/Act																																																																														
SESN1	0	MSKCC	GRCh37	6	109322612	109322612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	42	607	0	ENST00000436639.2:c.425A>G	p.Asn142Ser	p.N142S	ENST00000436639	NM_014454.2	142	aAc/aGc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38173530	38173530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	35	541	0	ENST00000317025.8:c.1886C>T	p.Pro629Leu	p.P629L	ENST00000317025	NM_023034.1	629	cCt/cTt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969427	44969427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	43	312	0	ENST00000377967.4:c.4109A>G	p.Glu1370Gly	p.E1370G	ENST00000377967	NM_021140.2	1370	gAa/gGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	64	694	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0024491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	28	361	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	61	915	1	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911599	114911600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	65	693	0	ENST00000543371.1:c.1118dup	p.Leu374ValfsTer49	p.L374Vfs*49	ENST00000543371	NM_001198531.1	373	acg/aCcg																																																																														
BCOR	0	MSKCC	GRCh37	X	39933971	39933971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	57	844	0	ENST00000378444.4:c.628C>A	p.Pro210Thr	p.P210T	ENST00000378444	NM_001123385.1	210	Cca/Aca																																																																														
AMER1	0	MSKCC	GRCh37	X	63412196	63412196	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	69	1048	0	ENST00000330258.3:c.971C>G	p.Ser324Ter	p.S324*	ENST00000330258	NM_152424.3	324	tCa/tGa																																																																														
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	70	546	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																																																														
IDH2	0	MSKCC	GRCh37	15	90631817	90631817	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0024492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	147	656	0	ENST00000330062.3:c.534+2T>A		p.X178_splice	ENST00000330062	NM_002168.2	178																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0024493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	19	731	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0024493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	39	870	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
RICTOR	0	MSKCC	GRCh37	5	39074470	39074470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	18	561	0	ENST00000357387.3:c.10A>G	p.Ile4Val	p.I4V	ENST00000357387	NM_152756.3	4	Atc/Gtc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971098	21971099	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	18	568	0	ENST00000304494.5:c.259dup	p.Arg87ProfsTer33	p.R87Pfs*33	ENST00000304494	NM_000077.4	87	cgg/cCgg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971098	21971099	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	18	568	0	ENST00000304494.5:c.259dup	p.Arg87ProfsTer33	p.R87Pfs*33	ENST00000304494	NM_000077.4	87	cgg/cCgg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971098	21971099	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	18	568	0	ENST00000304494.5:c.259dup	p.Arg87ProfsTer33	p.R87Pfs*33	ENST00000304494	NM_000077.4	87	cgg/cCgg																																																																														
BCOR	0	MSKCC	GRCh37	X	39921447	39921451	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAT	ACAAT	-			P-0024493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	23	357	0	ENST00000378444.4:c.4369_4373del	p.Ile1457GlnfsTer2	p.I1457Qfs*2	ENST00000378444	NM_001123385.1	1457	ATTGTc/c																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	91	828	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	29	555	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																																																														
APC	0	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	27	336	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112174484	112174484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	21	390	0	ENST00000257430.4:c.3193C>T	p.Gln1065Ter	p.Q1065*	ENST00000257430	NM_000038.5	1065	Caa/Taa																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849819	156849819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	28	700	1	ENST00000524377.1:c.2075G>A	p.Arg692His	p.R692H	ENST00000524377	NM_002529.3	692	cGc/cAc																																																																														
NEGR1	0	MSKCC	GRCh37	1	72400939	72400939	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	29	605	0	ENST00000357731.5:c.232A>G	p.Ile78Val	p.I78V	ENST00000357731	NM_173808.2	78	Att/Gtt																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873719	35873720	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGA			P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	49	859	0	ENST00000216797.5:c.131_132insTCTA	p.Gln44HisfsTer43	p.Q44Hfs*43	ENST00000216797	NM_020529.2	44	cag/caTCTAg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67477092	67477092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	69	732	0	ENST00000327367.4:c.899G>T	p.Gly300Val	p.G300V	ENST00000327367	NM_005902.3	300	gGa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	183	645	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	82	722	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
TET1	0	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	140	555	0	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	30	772	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	61	525	1	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																														
TBX3	0	MSKCC	GRCh37	12	115115436	115115436	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	288	729	0	ENST00000257566.3:c.890A>G	p.Asn297Ser	p.N297S	ENST00000257566	NM_016569.3	297	aAc/aGc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247373	153247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	75	326	0	ENST00000281708.4:c.1429G>A	p.Gly477Ser	p.G477S	ENST00000281708	NM_033632.3	477	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7579315	7579315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	46	566	1	ENST00000269305.4:c.372C>A	p.Cys124Ter	p.C124*	ENST00000269305	NM_001126112.2	124	tgC/tgA																																																																														
APC	0	MSKCC	GRCh37	5	112176030	112176030	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	103	385	0	ENST00000257430.4:c.4741delT	p.Ser1581LeufsTer69	p.S1581Lfs*69	ENST00000257430	NM_000038.5	1580	aTt/at																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41749442	41749442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	147	533	1	ENST00000226382.2:c.353C>T	p.Ala118Val	p.A118V	ENST00000226382	NM_003924.3	118	gCg/gTg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913647	32913647	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	26	449	0	ENST00000380152.3:c.5155A>G	p.Asn1719Asp	p.N1719D	ENST00000380152		1719	Aat/Gat																																																																														
TP53	0	MSKCC	GRCh37	17	7578232	7578232	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	351	818	0	ENST00000269305.4:c.617T>A	p.Leu206Ter	p.L206*	ENST00000269305	NM_001126112.2	206	tTg/tAg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248408	212248408	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	79	329	0	ENST00000342788.4:c.3859G>T	p.Glu1287Ter	p.E1287*	ENST00000342788	NM_005235.2	1287	Gag/Tag																																																																														
FGFR3	0	MSKCC	GRCh37	4	1801503	1801503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	200	981	4	ENST00000260795.2:c.409G>A	p.Gly137Arg	p.G137R	ENST00000260795		137	Ggg/Agg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467723	66467723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	116	473	0	ENST00000273854.3:c.546C>A	p.Ser182Arg	p.S182R	ENST00000273854	NM_004439.5	182	agC/agA																																																																														
APC	0	MSKCC	GRCh37	5	112173639	112173645	+	frameshift_variant	Frame_Shift_Del	DEL	CATCTCA	CATCTCA	-			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	89	427	0	ENST00000257430.4:c.2348_2354del	p.Ala783ValfsTer35	p.A783Vfs*35	ENST00000257430	NM_000038.5	783	gCATCTCAt/gt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945318	151945318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	42	108	0	ENST00000262189.6:c.2201C>T	p.Thr734Ile	p.T734I	ENST00000262189	NM_170606.2	734	aCt/aTt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	144	421	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462998	120462998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	227	544	2	ENST00000256646.2:c.5333C>T	p.Ser1778Leu	p.S1778L	ENST00000256646	NM_024408.3	1778	tCa/tTa																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189447	94189447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	191	749	0	ENST00000323929.3:c.1558C>G	p.Arg520Gly	p.R520G	ENST00000323929	NM_005591.3	520	Cgt/Ggt																																																																														
AXIN1	0	MSKCC	GRCh37	16	396232	396232	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	291	840	0	ENST00000262320.3:c.794del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	265	gGa/ga																																																																														
NF1	0	MSKCC	GRCh37	17	29508735	29508735	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	397	716	0	ENST00000358273.4:c.662G>A	p.Trp221Ter	p.W221*	ENST00000358273	NM_001042492.2	221	tGg/tAg																																																																														
U2AF1	0	MSKCC	GRCh37	21	44513276	44513276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	341	839	0	ENST00000291552.4:c.659G>T	p.Gly220Val	p.G220V	ENST00000291552	NM_006758.2	220	gGt/gTt																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149495388	149495388	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	309	962	0	ENST00000261799.4:c.3259del	p.Glu1087AsnfsTer45	p.E1087Nfs*45	ENST00000261799	NM_002609.3	1087	Gaa/aa																																																																														
MED12	0	MSKCC	GRCh37	X	70352756	70352756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	364	429	0	ENST00000374080.3:c.4477G>T	p.Asp1493Tyr	p.D1493Y	ENST00000374080		1493	Gat/Tat																																																																														
ATRX	0	MSKCC	GRCh37	X	76909590	76909590	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	136	387	0	ENST00000373344.5:c.4315A>T	p.Lys1439Ter	p.K1439*	ENST00000373344	NM_000489.3	1439	Aag/Tag																																																																														
RBM10	0	MSKCC	GRCh37	X	47045559	47045560	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	T			P-0024498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	207	304	0	ENST00000329236.7:c.2292_2293delinsT	p.Thr765GlnfsTer4	p.T765Qfs*4	ENST00000329236	NM_001204466.1	764	tcCAca/tcTca																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0024557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	41	331	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																																																														
PTEN	0	MSKCC	GRCh37	10	89692839	89692839	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	19	219	0	ENST00000371953.3:c.323T>G	p.Leu108Arg	p.L108R	ENST00000371953	NM_000314.4	108	cTt/cGt																																																																														
MSH3	0	MSKCC	GRCh37	5	80021291	80021291	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	62	576	2	ENST00000265081.6:c.1360C>T	p.Arg454Ter	p.R454*	ENST00000265081	NM_002439.4	454	Cga/Tga																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56189386	56189386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	50	554	0	ENST00000399503.3:c.4418del	p.Ile1473ThrfsTer17	p.I1473Tfs*17	ENST00000399503	NM_005921.1	1473	aTc/ac																																																																														
KMT2C	0	MSKCC	GRCh37	7	151900035	151900036	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0024557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	92	628	0	ENST00000262189.6:c.4075_4076del	p.Phe1359ProfsTer18	p.F1359Pfs*18	ENST00000262189	NM_170606.2	1359	TTc/c																																																																														
TP53	0	MSKCC	GRCh37	17	7577567	7577581	+	frameshift_variant	Frame_Shift_Del	DEL	ACACATGTAGTTGTA	ACACATGTAGTTGTA	T			P-0024557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	57	662	0	ENST00000269305.4:c.700_714delinsA	p.Tyr234LysfsTer25	p.Y234Kfs*25	ENST00000269305	NM_001126112.2	234	TACAACTACATGTGT/A																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019967-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			264	57	565	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
SOX17	0	MSKCC	GRCh37	8	55371984	55371984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019967-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	83	503	0	ENST00000297316.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000297316	NM_022454.3	225	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			158	229	501	1	ENST00000269305.4:c.645T>A	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agA																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			108	218	290	1	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			108	218	290	1	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
DDR2	0	MSKCC	GRCh37	1	162740157	162740157	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			257	240	376	1	ENST00000367921.3:c.1359G>T	p.Met453Ile	p.M453I	ENST00000367921	NM_006182.2	453	atG/atT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431570	49431597	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCCCGTGGCCCCAAAGGAGGCCTTCT	CCTCCCGTGGCCCCAAAGGAGGCCTTCT	TCG			P-0020569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			422	71	437	2	ENST00000301067.7:c.9542_9569delinsCGA	p.Glu3181AlafsTer8	p.E3181Afs*8	ENST00000301067	NM_003482.3	3181	gAGAAGGCCTCCTTTGGGGCCACGGGAGGa/gCGAa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443512	49443512	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			204	245	333	3	ENST00000301067.7:c.3859del	p.Glu1287ArgfsTer43	p.E1287Rfs*43	ENST00000301067	NM_003482.3	1287	Gag/ag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911691	32911691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			187	136	383	0	ENST00000380152.3:c.3199A>G	p.Thr1067Ala	p.T1067A	ENST00000380152		1067	Act/Gct																																																																														
MSH2	0	MSKCC	GRCh37	2	47635645	47635645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41295286		P-0020569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	90	494	0	ENST00000233146.2:c.317G>A	p.Arg106Lys	p.R106K	ENST00000233146	NM_000251.2	106	aGa/aAa																																																																														
KIT	0	MSKCC	GRCh37	4	55602970	55602970	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141126803		P-0020569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			163	106	282	0	ENST00000288135.5:c.2680C>T	p.His894Tyr	p.H894Y	ENST00000288135	NM_000222.2	894	Cac/Tac																																																																														
RASA1	0	MSKCC	GRCh37	5	86629127	86629127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			74	86	237	0	ENST00000274376.6:c.872C>T	p.Thr291Ile	p.T291I	ENST00000274376	NM_002890.2	291	aCa/aTa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520479	176520479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			316	151	592	0	ENST00000292408.4:c.1324G>T	p.Gly442Cys	p.G442C	ENST00000292408	NM_213647.1	442	Ggc/Tgc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70978741	70978741	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			291	165	297	0	ENST00000276594.2:c.913-1G>T		p.X305_splice	ENST00000276594	NM_024504.3	305																																																																															
H3F3C	0	MSKCC	GRCh37	12	31944878	31944878	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs141415515		P-0020569-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			304	38	301	0	ENST00000340398.3:c.223G>C	p.Ala75Pro	p.A75P	ENST00000340398	NM_001013699.2	75	Gcg/Ccg																																																																														
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	175	712	1	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	81	602	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
NF1	0	MSKCC	GRCh37	17	29588876	29588876	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	48	327	0	ENST00000358273.4:c.4724+1G>T		p.X1575_splice	ENST00000358273	NM_001042492.2	1575																																																																															
DICER1	0	MSKCC	GRCh37	14	95570448	95570448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	37	345	0	ENST00000343455.3:c.3285C>G	p.Asp1095Glu	p.D1095E	ENST00000343455	NM_177438.2	1095	gaC/gaG																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991674	72991674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	31	362	0	ENST00000268489.5:c.2371G>T	p.Gly791Trp	p.G791W	ENST00000268489	NM_006885.3	791	Ggg/Tgg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599958	10599958	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	107	702	1	ENST00000171111.5:c.1618G>T	p.Glu540Ter	p.E540*	ENST00000171111	NM_203500.1	540	Gaa/Taa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71015209	71015209	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	30	250	0	ENST00000318789.4:c.1723-2A>T		p.X575_splice	ENST00000318789	NM_032682.5	575																																																																															
KDR	0	MSKCC	GRCh37	4	55976840	55976840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	61	526	0	ENST00000263923.4:c.1072C>G	p.Pro358Ala	p.P358A	ENST00000263923	NM_002253.2	358	Cca/Gca																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971092	21971092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	73	362	0	ENST00000304494.5:c.266G>A	p.Gly89Asp	p.G89D	ENST00000304494	NM_000077.4	89	gGc/gAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971092	21971092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	73	362	0	ENST00000304494.5:c.266G>A	p.Gly89Asp	p.G89D	ENST00000304494	NM_000077.4	89	gGc/gAc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101907097	101907097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	64	566	1	ENST00000374994.4:c.1057G>A	p.Gly353Arg	p.G353R	ENST00000374994	NM_004612.2	353	Gga/Aga																																																																														
AMER1	0	MSKCC	GRCh37	X	63412971	63412971	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024306-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	139	815	1	ENST00000330258.3:c.196A>T	p.Ile66Phe	p.I66F	ENST00000330258	NM_152424.3	66	Atc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	38	761	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43699645	43699645	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	51	852	0	ENST00000382044.4:c.5870T>C	p.Ile1957Thr	p.I1957T	ENST00000382044	NM_001141980.1	1957	aTt/aCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	25	712	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	322	668	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112174152	112174152	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	65	429	0	ENST00000257430.4:c.2861T>A	p.Leu954Ter	p.L954*	ENST00000257430	NM_000038.5	954	tTa/tAa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710994	114710994	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	51	386	0	ENST00000543371.1:c.220del	p.Ser74ValfsTer34	p.S74Vfs*34	ENST00000543371	NM_001198531.1	73	gAa/ga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	17	572	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	33	472	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279674	123279674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	49	355	0	ENST00000358487.5:c.758C>G	p.Pro253Arg	p.P253R	ENST00000358487	NM_000141.4	253	cCt/cGt																																																																														
MED12	0	MSKCC	GRCh37	X	70339328	70339328	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0024384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	28	446	0	ENST00000374080.3:c.204+1G>T		p.X68_splice	ENST00000374080		68																																																																															
ARID1B	0	MSKCC	GRCh37	6	157528930	157528930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024384-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	51	545	0	ENST00000346085.5:c.6655G>A	p.Glu2219Lys	p.E2219K	ENST00000346085	NM_020732.3	2219	Gag/Aag																																																																														
VHL	0	MSKCC	GRCh37	3	10188210	10188210	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs5030830		P-0024385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	33	601	0	ENST00000256474.2:c.353T>C	p.Leu118Pro	p.L118P	ENST00000256474	NM_000551.3	118	cTc/cCc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459776	149459776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	68	624	1	ENST00000286301.3:c.431G>A	p.Arg144His	p.R144H	ENST00000286301	NM_005211.3	144	cGt/cAt																																																																														
CYLD	0	MSKCC	GRCh37	16	50818285	50818286	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	34	460	0	ENST00000398568.2:c.1866dup	p.Glu623ArgfsTer9	p.E623Rfs*9	ENST00000398568	NM_001042412.1	621	-/A																																																																														
SETD2	0	MSKCC	GRCh37	3	47142980	47142980	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	38	607	0	ENST00000409792.3:c.4983G>C	p.Glu1661Asp	p.E1661D	ENST00000409792	NM_014159.6	1661	gaG/gaC																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643822	52643822	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	19	575	0	ENST00000394830.3:c.2074G>T	p.Glu692Ter	p.E692*	ENST00000394830	NM_018313.4	692	Gag/Tag																																																																														
TERT	0	MSKCC	GRCh37	5	1264587	1264587	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	35	663	0	ENST00000310581.5:c.2775C>G	p.His925Gln	p.H925Q	ENST00000310581	NM_198253.2	925	caC/caG																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0024387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	197	735	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	426	807	0	ENST00000269305.4:c.764T>A	p.Ile255Asn	p.I255N	ENST00000269305	NM_001126112.2	255	aTc/aAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928078	178928080	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0024387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	155	661	0	ENST00000263967.3:c.1359_1361delAGA	p.Glu453del	p.E453del	ENST00000263967	NM_006218.2	452	ttAGAa/tta																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56181765	56181765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	8	411	1	ENST00000399503.3:c.3989C>T	p.Ser1330Leu	p.S1330L	ENST00000399503	NM_005921.1	1330	tCg/tTg																																																																														
ARAF	0	MSKCC	GRCh37	X	47422716	47422716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	119	599	0	ENST00000377045.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000377045	NM_001654.4	63	cGa/cAa																																																																														
RIT1	0	MSKCC	GRCh37	1	155880484	155880484	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	550	681	0	ENST00000368323.3:c.69A>C	p.Lys23Asn	p.K23N	ENST00000368323	NM_006912.5	23	aaA/aaC																																																																														
JAK3	0	MSKCC	GRCh37	19	17945972	17945972	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1088	98	961	0	ENST00000458235.1:c.1967C>G	p.Ala656Gly	p.A656G	ENST00000458235	NM_000215.3	656	gCt/gGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	123	517	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	231	699	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212248	5212248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	226	569	0	ENST00000357368.4:c.4783C>T	p.Arg1595Cys	p.R1595C	ENST00000357368	NM_002850.3	1595	Cgc/Tgc																																																																														
SPEN	0	MSKCC	GRCh37	1	16259068	16259068	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	100	537	0	ENST00000375759.3:c.6333G>C	p.Glu2111Asp	p.E2111D	ENST00000375759	NM_015001.2	2111	gaG/gaC																																																																														
NCOR1	0	MSKCC	GRCh37	17	15965041	15965041	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	85	515	0	ENST00000268712.3:c.5555A>C	p.Asn1852Thr	p.N1852T	ENST00000268712	NM_006311.3	1852	aAt/aCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	125	412	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178342	56178343	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	126	324	0	ENST00000399503.3:c.3316dup	p.Ile1106AsnfsTer4	p.I1106Nfs*4	ENST00000399503	NM_005921.1	1105	-/A																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56179455	56179457	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0024500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	56	448	0	ENST00000399503.3:c.3770_3772del	p.Cys1257del	p.C1257del	ENST00000399503	NM_005921.1	1256	tcTTGt/tct																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101867538	101867540	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0024501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	10	41	0	ENST00000374994.4:c.76_78delGCG	p.Ala26del	p.A26del	ENST00000374994	NM_004612.2	17	ctGGCg/ctg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	1260	756	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	236	425	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																																																														
TP53	0	MSKCC	GRCh37	17	7578224	7578224	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	443	864	0	ENST00000269305.4:c.625A>T	p.Arg209Ter	p.R209*	ENST00000269305	NM_001126112.2	209	Aga/Tga																																																																														
CYLD	0	MSKCC	GRCh37	16	50813599	50813599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	351	634	0	ENST00000398568.2:c.1153C>T	p.Leu385Phe	p.L385F	ENST00000398568	NM_001042412.1	385	Ctt/Ttt																																																																														
SRC	0	MSKCC	GRCh37	20	36030862	36030862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	162	528	0	ENST00000358208.4:c.1141G>A	p.Glu381Lys	p.E381K	ENST00000358208		381	Gag/Aag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974691	21974732	+	inframe_deletion	In_Frame_Del	DEL	GACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCA	GACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCA	-			P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	200	559	0	ENST00000304494.5:c.95_136del	p.Leu32_Gly45del	p.L32_G45del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCCCAACGCACCGAATAGTTACGGTCgg/cgg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974691	21974732	+	inframe_deletion	In_Frame_Del	DEL	GACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCA	GACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCA	-			P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	200	559	0	ENST00000304494.5:c.95_136del	p.Leu32_Gly45del	p.L32_G45del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCCCAACGCACCGAATAGTTACGGTCgg/cgg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44820620	44820632	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAAGATTATCC	TGGAAGATTATCC	-			P-0021321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	307	721	0	ENST00000377967.4:c.317_329del	p.Leu106Ter	p.L106*	ENST00000377967	NM_021140.2	106	tTGGAAGATTATCCa/ta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	33	666	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0021676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	70	866	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114799874	114799874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	93	760	2	ENST00000543371.1:c.541G>A	p.Ala181Thr	p.A181T	ENST00000543371	NM_001198531.1	181	Gca/Aca																																																																														
BCOR	0	MSKCC	GRCh37	X	39933047	39933047	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	118	465	2	ENST00000378444.4:c.1552G>T	p.Glu518Ter	p.E518*	ENST00000378444	NM_001123385.1	518	Gaa/Taa																																																																														
TAP2	6891	MSKCC	GRCh37	6	32797242	32797242	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs771932254		P-0021676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	87	1028	1	ENST00000374899.4:c.1867C>T	p.Arg623Ter	p.R623*	ENST00000374899	NM_018833.2	623	Cga/Tga																																																																														
ELF3	1999	MSKCC	GRCh37	1	201984448	201984449	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	76	651	0	ENST00000359651.3:c.1114dup	p.Ter372LeufsTer99	p.*372Lfs*99	ENST00000359651		371	-/T																																																																														
TET1	0	MSKCC	GRCh37	10	70333405	70333405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	100	992	0	ENST00000373644.4:c.1310C>T	p.Pro437Leu	p.P437L	ENST00000373644	NM_030625.2	437	cCa/cTa																																																																														
ARID2	0	MSKCC	GRCh37	12	46231201	46231201	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0021676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	51	480	1	ENST00000334344.6:c.1120+1G>A		p.X374_splice	ENST00000334344	NM_152641.2	374																																																																															
ARID2	0	MSKCC	GRCh37	12	46244433	46244433	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	48	693	0	ENST00000334344.6:c.2527C>T	p.Gln843Ter	p.Q843*	ENST00000334344	NM_152641.2	843	Caa/Taa																																																																														
RARA	0	MSKCC	GRCh37	17	38508715	38508715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	48	821	2	ENST00000254066.5:c.763G>A	p.Ala255Thr	p.A255T	ENST00000254066	NM_000964.3	255	Gcc/Acc																																																																														
PREX2	0	MSKCC	GRCh37	8	69028007	69028007	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	22	602	0	ENST00000288368.4:c.3166T>C	p.Tyr1056His	p.Y1056H	ENST00000288368	NM_024870.2	1056	Tat/Cat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636715	8636715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	77	374	1	ENST00000356435.5:c.194G>A	p.Ser65Asn	p.S65N	ENST00000356435		65	aGc/aAc																																																																														
TSC1	0	MSKCC	GRCh37	9	135797325	135797325	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	36	407	0	ENST00000298552.3:c.544G>C	p.Ala182Pro	p.A182P	ENST00000298552	NM_001162426.1	182	Gcc/Ccc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	51	889	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579533	7579533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	51	1086	0	ENST00000269305.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000269305	NM_001126112.2	52	Caa/Taa																																																																														
RB1	0	MSKCC	GRCh37	13	49050909	49050909	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	64	675	0	ENST00000267163.4:c.2593G>T	p.Gly865Ter	p.G865*	ENST00000267163	NM_000321.2	865	Gga/Tga																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965103	25965103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	35	710	0	ENST00000435504.4:c.4103C>T	p.Pro1368Leu	p.P1368L	ENST00000435504		1368	cCt/cTt																																																																														
CDK12	0	MSKCC	GRCh37	17	37619221	37619221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	104	595	0	ENST00000447079.4:c.897G>C	p.Gln299His	p.Q299H	ENST00000447079	NM_015083.1	299	caG/caC																																																																														
NF2	0	MSKCC	GRCh37	22	30070829	30070829	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	171	570	0	ENST00000338641.4:c.1345A>T	p.Lys449Ter	p.K449*	ENST00000338641	NM_000268.3	449	Aaa/Taa																																																																														
BCOR	0	MSKCC	GRCh37	X	39914747	39914747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	77	318	0	ENST00000378444.4:c.4615G>C	p.Glu1539Gln	p.E1539Q	ENST00000378444	NM_001123385.1	1539	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	40	725	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1267	68	794	3	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0022361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	76	707	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																														
PTPRS	0	MSKCC	GRCh37	19	5274217	5274217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	51	686	1	ENST00000357368.4:c.230G>A	p.Arg77His	p.R77H	ENST00000357368	NM_002850.3	77	cGc/cAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420868	49420868	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	71	594	0	ENST00000301067.7:c.14881C>G	p.Pro4961Ala	p.P4961A	ENST00000301067	NM_003482.3	4961	Ccc/Gcc																																																																														
TERT	0	MSKCC	GRCh37	5	1295434	1295435	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0022361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	13	36	0				ENST00000310581	NM_198253.2																																																																																
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	176	664	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	560	723	0	ENST00000171111.5:c.959G>T	p.Arg320Leu	p.R320L	ENST00000171111	NM_203500.1	320	cGg/cTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435378	110435378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1753	681	781	0	ENST00000375856.3:c.3023C>T	p.Pro1008Leu	p.P1008L	ENST00000375856	NM_003749.2	1008	cCc/cTc																																																																														
MGA	0	MSKCC	GRCh37	15	42042598	42042598	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	44	509	1	ENST00000219905.7:c.6793A>T	p.Arg2265Ter	p.R2265*	ENST00000219905	NM_001164273.1	2265	Aga/Tga																																																																														
BLM	0	MSKCC	GRCh37	15	91298157	91298157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	27	293	0	ENST00000355112.3:c.1076C>A	p.Thr359Lys	p.T359K	ENST00000355112	NM_000057.2	359	aCa/aAa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	83	469	1	ENST00000262367.5:c.3250dupA	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																																																														
STK11	0	MSKCC	GRCh37	19	1223021	1223022	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	327	678	0	ENST00000326873.7:c.959dup	p.Pro321AlafsTer39	p.P321Afs*39	ENST00000326873	NM_000455.4	320	gtg/gTtg																																																																														
CALR	0	MSKCC	GRCh37	19	13051264	13051264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	69	332	1	ENST00000316448.5:c.700G>A	p.Glu234Lys	p.E234K	ENST00000316448	NM_004343.3	234	Gag/Aag																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091814	29091814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	73	671	0	ENST00000328354.6:c.1143G>C	p.Met381Ile	p.M381I	ENST00000328354	NM_007194.3	381	atG/atC																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	75	630	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482607	56482607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	87	875	2	ENST00000267101.3:c.1064C>T	p.Thr355Ile	p.T355I	ENST00000267101	NM_001982.3	355	aCc/aTc																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43701295	43701295	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0022805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	51	490	0	ENST00000382044.4:c.5401-1G>A		p.X1801_splice	ENST00000382044	NM_001141980.1	1801																																																																															
MAP3K1	0	MSKCC	GRCh37	5	56167765	56167765	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	50	496	0	ENST00000399503.3:c.1331del	p.Pro444LeufsTer43	p.P444Lfs*43	ENST00000399503	NM_005921.1	444	Cct/ct																																																																														
ESR1	0	MSKCC	GRCh37	6	152419916	152419916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	58	712	0	ENST00000206249.3:c.1603C>T	p.Pro535Ser	p.P535S	ENST00000206249	NM_000125.3	535	Ccc/Tcc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177852	56177852	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200778337		P-0022805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	42	430	0	ENST00000399503.3:c.2825C>A	p.Thr942Lys	p.T942K	ENST00000399503	NM_005921.1	942	aCa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	155	934	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	156	932	2	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	171	695	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101911579	101911579	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	164	688	0	ENST00000374994.4:c.1507del	p.Met503CysfsTer44	p.M503Cfs*44	ENST00000374994	NM_004612.2	502	Aaa/aa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279562	123279562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	197	980	0	ENST00000358487.5:c.870G>C	p.Trp290Cys	p.W290C	ENST00000358487	NM_000141.4	290	tgG/tgC																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105813	27105814	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0023349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	141	627	0	ENST00000324856.7:c.5426_5427dup	p.Asp1810LeufsTer6	p.D1810Lfs*6	ENST00000324856	NM_006015.4	1808	-/TT																																																																														
RIT1	0	MSKCC	GRCh37	1	155870235	155870235	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	203	974	0	ENST00000368323.3:c.604del	p.Ser202ValfsTer6	p.S202Vfs*6	ENST00000368323	NM_006912.5	202	Agt/gt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0023369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	94	338	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
EED	0	MSKCC	GRCh37	11	85988976	85988976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	93	268	1	ENST00000263360.6:c.1142A>G	p.Asn381Ser	p.N381S	ENST00000263360	NM_003797.3	381	aAt/aGt																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35872008	35872008	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	126	348	0	ENST00000216797.5:c.605T>C	p.Leu202Ser	p.L202S	ENST00000216797	NM_020529.2	202	tTg/tCg																																																																														
STK11	0	MSKCC	GRCh37	19	1221236	1221236	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	204	590	0	ENST00000326873.7:c.762del	p.Phe255SerfsTer32	p.F255Sfs*32	ENST00000326873	NM_000455.4	253	taC/ta																																																																														
AR	0	MSKCC	GRCh37	X	66766343	66766343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	23	186	1	ENST00000374690.3:c.1355G>A	p.Gly452Asp	p.G452D	ENST00000374690	NM_000044.3	452	gGt/gAt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484218	8484218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	44	536	2	ENST00000356435.5:c.3314C>A	p.Pro1105Gln	p.P1105Q	ENST00000356435		1105	cCa/cAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002133-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	198	317	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101468	27101468	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002133-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			111	428	546	0	ENST00000324856.7:c.4750C>T	p.Gln1584Ter	p.Q1584*	ENST00000324856	NM_006015.4	1584	Cag/Tag																																																																														
CDH1	0	MSKCC	GRCh37	16	68867305	68867306	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002133-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			91	288	398	0	ENST00000261769.5:c.2553dup	p.Glu852ArgfsTer9	p.E852Rfs*9	ENST00000261769	NM_004360.3	851	tca/tcAa																																																																														
STK11	0	MSKCC	GRCh37	19	1221961	1221961	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002133-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			258	170	580	1	ENST00000326873.7:c.876C>A	p.Tyr292Ter	p.Y292*	ENST00000326873	NM_000455.4	292	taC/taA																																																																														
POLE	0	MSKCC	GRCh37	12	133202788	133202788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201165149		P-0021540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	130	712	1	ENST00000320574.5:c.6446G>A	p.Arg2149His	p.R2149H	ENST00000320574	NM_006231.2	2149	cGc/cAc																																																																														
SPEN	0	MSKCC	GRCh37	1	16255014	16255014	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	18	412	0	ENST00000375759.3:c.2279C>G	p.Ser760Ter	p.S760*	ENST00000375759	NM_015001.2	760	tCa/tGa																																																																														
CSDE1	0	MSKCC	GRCh37	1	115262240	115262240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	180	646	1	ENST00000438362.2:c.2314C>T	p.Arg772Cys	p.R772C	ENST00000438362	NM_001242891.1	772	Cgc/Tgc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0021912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	251	789	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	178	729	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
FANCA	0	MSKCC	GRCh37	16	89842197	89842197	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	204	697	0	ENST00000389301.3:c.1853A>C	p.Tyr618Ser	p.Y618S	ENST00000389301	NM_000135.2	618	tAc/tCc																																																																														
SETD2	0	MSKCC	GRCh37	3	47158192	47158192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	179	590	1	ENST00000409792.3:c.4507C>T	p.Pro1503Ser	p.P1503S	ENST00000409792	NM_014159.6	1503	Cct/Tct																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945483	151945490	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGATAC	CTGGATAC	-			P-0021912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	193	1106	0	ENST00000262189.6:c.2029_2036delGTATCCAG	p.Val677ArgfsTer25	p.V677Rfs*25	ENST00000262189	NM_170606.2	677	GTATCCAGa/a																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	78	699	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CDH1	0	MSKCC	GRCh37	16	68853326	68853326	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0021923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	228	810	0	ENST00000261769.5:c.1709A>G	p.Asn570Ser	p.N570S	ENST00000261769	NM_004360.3	570	aAt/aGt																																																																														
EZH2	0	MSKCC	GRCh37	7	148525934	148525934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	279	908	0	ENST00000320356.2:c.523G>A	p.Val175Met	p.V175M	ENST00000320356	NM_004456.4	175	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	376	683	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0022245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	270	698	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	136	596	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89462327	89462327	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	82	526	0	ENST00000336596.2:c.1799A>T	p.His600Leu	p.H600L	ENST00000336596	NM_005233.5	600	cAt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	34	813	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0022400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	39	574	0				ENST00000310581	NM_198253.2																																																																																
CDKN2A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	74	551	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	74	551	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0022400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	29	776	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	19	437	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
ABL1	0	MSKCC	GRCh37	9	133760960	133760960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	46	873	1	ENST00000318560.5:c.3283C>T	p.Arg1095Trp	p.R1095W	ENST00000318560	NM_005157.4	1095	Cgg/Tgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9546724	9546724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	20	404	0	ENST00000353224.5:c.1298G>T	p.Arg433Leu	p.R433L	ENST00000353224	NM_177990.2	433	cGg/cTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187532539	187532539	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	25	547	0	ENST00000441802.2:c.9853+1G>A		p.X3285_splice	ENST00000441802	NM_005245.3	3285																																																																															
KMT2C	0	MSKCC	GRCh37	7	151871289	151871289	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022435-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	50	752	0	ENST00000262189.6:c.9301A>G	p.Met3101Val	p.M3101V	ENST00000262189	NM_170606.2	3101	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	111	598	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	74	665	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	79	446	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	79	446	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057730	27057730	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1442	131	825	1	ENST00000324856.7:c.1438C>T	p.Gln480Ter	p.Q480*	ENST00000324856	NM_006015.4	480	Cag/Tag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817863	3817864	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	86	701	0	ENST00000262367.5:c.3107_3108insG	p.Asp1037ArgfsTer14	p.D1037Rfs*14	ENST00000262367	NM_004380.2	1036	aca/acGa																																																																														
SOS1	0	MSKCC	GRCh37	2	39347524	39347524	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022534-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	67	546	0	ENST00000402219.2:c.40G>T	p.Glu14Ter	p.E14*	ENST00000402219	NM_005633.3	14	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0024159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	259	1170	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
DDR2	0	MSKCC	GRCh37	1	162729619	162729728	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGTCTGGCCTGGACGATTTCACCCAGACCCATGAATACCACGTGTGGCCCGGCTATGACTATGTGGGCTGGCGGAACGAGAGTGCCACCAATGGCTACATTGAGATCA	TGTGTCTGGCCTGGACGATTTCACCCAGACCCATGAATACCACGTGTGGCCCGGCTATGACTATGTGGGCTGGCGGAACGAGAGTGCCACCAATGGCTACATTGAGATCA	-			P-0024159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	68	858	0	ENST00000367921.3:c.708_817del	p.Ser237Ter	p.S237*	ENST00000367921	NM_006182.2	235	ggTGTGTCTGGCCTGGACGATTTCACCCAGACCCATGAATACCACGTGTGGCCCGGCTATGACTATGTGGGCTGGCGGAACGAGAGTGCCACCAATGGCTACATTGAGATCAtg/ggtg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434346	49434346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	102	1020	0	ENST00000301067.7:c.7207C>A	p.Leu2403Met	p.L2403M	ENST00000301067	NM_003482.3	2403	Ctg/Atg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49437560	49437634	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTTCCTGTGGGGCAGTCAAGGAGAAACAGTTTTCTTCATGCCCTGCAGGGCACAGACACCTCCCTCACTGCTT	GGCTTCCTGTGGGGCAGTCAAGGAGAAACAGTTTTCTTCATGCCCTGCAGGGCACAGACACCTCCCTCACTGCTT	-			P-0024159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	137	875	0	ENST00000301067.7:c.5319+17_5325del		p.X1773_splice	ENST00000301067	NM_003482.3	1773																																																																															
RARA	0	MSKCC	GRCh37	17	38512459	38512459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	142	852	0	ENST00000254066.5:c.1370C>A	p.Pro457Gln	p.P457Q	ENST00000254066	NM_000964.3	457	cCg/cAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575219	48575219	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	71	527	0	ENST00000342988.3:c.413C>A	p.Ser138Ter	p.S138*	ENST00000342988	NM_005359.5	138	tCa/tAa																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469626	25469626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	204	914	1	ENST00000264709.3:c.1142G>T	p.Gly381Val	p.G381V	ENST00000264709	NM_175629.2	381	gGg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	43	766	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	71	754	0	ENST00000269305.4:c.572_574del	p.Pro191del	p.P191del	ENST00000269305	NM_001126112.2	191	cCTCag/cag																																																																														
BCOR	0	MSKCC	GRCh37	X	39932980	39932980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	67	750	0	ENST00000378444.4:c.1619G>A	p.Arg540Gln	p.R540Q	ENST00000378444	NM_001123385.1	540	cGg/cAg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	39	688	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827927	40827927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	223	659	0	ENST00000373198.4:c.2501G>A	p.Arg834His	p.R834H	ENST00000373198	NM_133170.3	834	cGc/cAc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593520	48593520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	24	300	0	ENST00000342988.3:c.1271A>T	p.Asp424Val	p.D424V	ENST00000342988	NM_005359.5	424	gAt/gTt																																																																														
MTOR	0	MSKCC	GRCh37	1	11301617	11301617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	76	819	0	ENST00000361445.4:c.1534G>C	p.Gly512Arg	p.G512R	ENST00000361445	NM_004958.3	512	Gga/Cga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911953	32911953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	37	667	0	ENST00000380152.3:c.3461C>T	p.Thr1154Ile	p.T1154I	ENST00000380152		1154	aCc/aTc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247367	153247368	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	17	352	0	ENST00000281708.4:c.1434_1435del	p.Asp480CysfsTer4	p.D480Cfs*4	ENST00000281708	NM_033632.3	478	tcTCga/tcga																																																																														
APC	0	MSKCC	GRCh37	5	112175218	112175219	+	stop_gained	Nonsense_Mutation	DNP	AA	AA	TT			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	25	271	2	ENST00000257430.4:c.3927_3928inv	p.Glu1309_Lys1310delinsAspTer	p.E1309_K1310delinsD*	ENST00000257430	NM_000038.5	1309	gaAAag/gaTTag																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128432165	128432165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	60	694	1	ENST00000265960.3:c.281G>A	p.Arg94Gln	p.R94Q	ENST00000265960	NM_001006617.1	94	cGa/cAa																																																																														
STK11	0	MSKCC	GRCh37	19	1220443	1220443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	44	839	0	ENST00000326873.7:c.536C>G	p.Pro179Arg	p.P179R	ENST00000326873	NM_000455.4	179	cCg/cGg																																																																														
ATRX	0	MSKCC	GRCh37	X	76888736	76888736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	40	691	2	ENST00000373344.5:c.5093G>A	p.Arg1698Gln	p.R1698Q	ENST00000373344	NM_000489.3	1698	cGg/cAg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602785	10602785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	57	855	1	ENST00000171111.5:c.793C>T	p.Gln265Ter	p.Q265*	ENST00000171111	NM_203500.1	265	Cag/Tag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18446889	18446889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	34	565	0	ENST00000266497.5:c.974A>G	p.Asp325Gly	p.D325G	ENST00000266497		325	gAc/gGc																																																																														
PMS1	0	MSKCC	GRCh37	2	190728722	190728722	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	29	403	0	ENST00000441310.2:c.2110A>G	p.Lys704Glu	p.K704E	ENST00000441310	NM_000534.4	704	Aaa/Gaa																																																																														
PARP1	0	MSKCC	GRCh37	1	226578231	226578231	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	48	652	0	ENST00000366794.5:c.497A>G	p.Asn166Ser	p.N166S	ENST00000366794	NM_001618.3	166	aAc/aGc																																																																														
TET1	0	MSKCC	GRCh37	10	70446245	70446245	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	95	561	0	ENST00000373644.4:c.5185A>G	p.Ile1729Val	p.I1729V	ENST00000373644	NM_030625.2	1729	Atc/Gtc																																																																														
ARID2	0	MSKCC	GRCh37	12	46244872	46244872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			632	106	745	0	ENST00000334344.6:c.2966C>T	p.Ser989Leu	p.S989L	ENST00000334344	NM_152641.2	989	tCg/tTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	280	650	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66233083	66233083	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			395	69	569	0	ENST00000273854.3:c.1916A>C	p.Asn639Thr	p.N639T	ENST00000273854	NM_004439.5	639	aAt/aCt																																																																														
APC	0	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			234	91	428	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390743	139390743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015146-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			381	126	869	5	ENST00000277541.6:c.7448C>T	p.Thr2483Met	p.T2483M	ENST00000277541	NM_017617.3	2483	aCg/aTg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	115	369	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0023940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	162	669	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TSHR	0	MSKCC	GRCh37	14	81610290	81610290	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	163	513	0	ENST00000298171.2:c.1888A>C	p.Ile630Leu	p.I630L	ENST00000298171	NM_000369.2	630	Atc/Ctc																																																																														
RBM10	0	MSKCC	GRCh37	X	47041598	47041598	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023940-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	207	370	0	ENST00000329236.7:c.1589G>A	p.Trp530Ter	p.W530*	ENST00000329236	NM_001204466.1	530	tGg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0023943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	288	887	3	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	93	424	2	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
APC	0	MSKCC	GRCh37	5	112174253	112174253	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	104	530	4	ENST00000257430.4:c.2962G>T	p.Glu988Ter	p.E988*	ENST00000257430	NM_000038.5	988	Gaa/Taa																																																																														
APC	324	MSKCC	GRCh37	5	112175569	112175569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	94	413	0	ENST00000257430.4:c.4280del	p.Pro1427LeufsTer46	p.P1427Lfs*46	ENST00000257430	NM_000038.5	1426	agC/ag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	100	535	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	109	866	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	38	355	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106917	27106917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	80	519	0	ENST00000324856.7:c.6532del	p.Asp2178ThrfsTer22	p.D2178Tfs*22	ENST00000324856	NM_006015.4	2176	caG/ca																																																																														
TP53	0	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	67	576	0	ENST00000269305.4:c.96+1G>A		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
CDKN2A	0	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	74	377	0	ENST00000304494.5:c.305C>A	p.Ala102Glu	p.A102E	ENST00000304494	NM_000077.4	102	gCg/gAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	74	377	0	ENST00000304494.5:c.305C>A	p.Ala102Glu	p.A102E	ENST00000304494	NM_000077.4	102	gCg/gAg																																																																														
SPEN	0	MSKCC	GRCh37	1	16261836	16261836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	102	601	0	ENST00000375759.3:c.9101C>T	p.Ser3034Phe	p.S3034F	ENST00000375759	NM_015001.2	3034	tCc/tTc																																																																														
FGF19	0	MSKCC	GRCh37	11	69518636	69518636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	33	523	0	ENST00000294312.3:c.9C>G	p.Ser3Arg	p.S3R	ENST00000294312	NM_005117.2	3	agC/agG																																																																														
FGF4	0	MSKCC	GRCh37	11	69588171	69588171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	61	747	0	ENST00000168712.1:c.527G>T	p.Gly176Val	p.G176V	ENST00000168712	NM_002007.2	176	gGc/gTc																																																																														
BIRC3	0	MSKCC	GRCh37	11	102206728	102206728	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	49	610	0	ENST00000263464.3:c.1357del	p.Ala453HisfsTer6	p.A453Hfs*6	ENST00000263464	NM_001165.4	452	atG/at																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426943	49426944	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	66	568	0	ENST00000301067.7:c.11544_11545delinsTT	p.Met3848_Gly3849delinsIleTer	p.M3848_G3849delinsI*	ENST00000301067	NM_003482.3	3848	atGGga/atTTga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858312	9858312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	49	482	0	ENST00000330684.3:c.3089C>A	p.Pro1030Gln	p.P1030Q	ENST00000330684	NM_001134407.1	1030	cCa/cAa																																																																														
EPAS1	0	MSKCC	GRCh37	2	46602969	46602969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	100	717	0	ENST00000263734.3:c.1027G>T	p.Val343Phe	p.V343F	ENST00000263734	NM_001430.4	343	Gtc/Ttc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248390	212248390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	44	387	0	ENST00000342788.4:c.3877G>T	p.Gly1293Cys	p.G1293C	ENST00000342788	NM_005235.2	1293	Ggc/Tgc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022323	31022323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	27	498	0	ENST00000375687.4:c.1808C>T	p.Ser603Phe	p.S603F	ENST00000375687	NM_015338.5	603	tCc/tTc																																																																														
BAP1	0	MSKCC	GRCh37	3	52439302	52439302	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	59	660	3	ENST00000460680.1:c.940G>T	p.Glu314Ter	p.E314*	ENST00000460680	NM_004656.3	314	Gag/Tag																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67590364	67590364	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	14	195	0	ENST00000274335.5:c.1426G>A	p.Glu476Lys	p.E476K	ENST00000274335		476	Gaa/Aaa																																																																														
FLT4	0	MSKCC	GRCh37	5	180048171	180048171	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	49	789	0	ENST00000261937.6:c.2102T>A	p.Val701Glu	p.V701E	ENST00000261937	NM_182925.4	701	gTg/gAg																																																																														
MGA	0	MSKCC	GRCh37	15	42032314	42032314	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	172	788	1	ENST00000219905.7:c.4499del	p.Asn1500IlefsTer19	p.N1500Ifs*19	ENST00000219905	NM_001164273.1	1500	Aat/at																																																																														
BCOR	0	MSKCC	GRCh37	X	39921591	39921595	+	frameshift_variant	Frame_Shift_Del	DEL	GACAG	GACAG	A			P-0023949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	77	796	0	ENST00000378444.4:c.4225_4229delinsT	p.Leu1409TyrfsTer74	p.L1409Yfs*74	ENST00000378444	NM_001123385.1	1409	CTGTCa/Ta																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	69	351	0				ENST00000310581	NM_198253.2																																																																																
CYLD	0	MSKCC	GRCh37	16	50826593	50826593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	119	438	0	ENST00000398568.2:c.2318A>G	p.Asn773Ser	p.N773S	ENST00000398568	NM_001042412.1	773	aAt/aGt																																																																														
BRD4	0	MSKCC	GRCh37	19	15376433	15376433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023950-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	232	875	1	ENST00000263377.2:c.581C>A	p.Ser194Tyr	p.S194Y	ENST00000263377	NM_058243.2	194	tCc/tAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	186	745	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0023952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	91	234	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
CXCR4	0	MSKCC	GRCh37	2	136872498	136872498	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	202	348	1	ENST00000241393.3:c.1000C>T	p.Arg334Ter	p.R334*	ENST00000241393	NM_003467.2	334	Cga/Tga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114903759	114903760	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0023952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	151	541	0	ENST00000543371.1:c.763_764del	p.His255SerfsTer72	p.H255Sfs*72	ENST00000543371	NM_001198531.1	255	CAt/t																																																																														
APC	324	MSKCC	GRCh37	5	112174759	112174760	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	111	402	0	ENST00000257430.4:c.3473_3474del	p.Arg1158ThrfsTer5	p.R1158Tfs*5	ENST00000257430	NM_000038.5	1156	gaAGag/gaag																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	123	696	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
TSC2	0	MSKCC	GRCh37	16	2121610	2121610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	120	647	0	ENST00000219476.3:c.1939G>A	p.Asp647Asn	p.D647N	ENST00000219476	NM_000548.3	647	Gac/Aac																																																																														
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	10	320	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																																																														
RB1	0	MSKCC	GRCh37	13	49030387	49030387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	43	555	1	ENST00000267163.4:c.1862G>A	p.Arg621His	p.R621H	ENST00000267163	NM_000321.2	621	cGt/cAt																																																																														
FYN	0	MSKCC	GRCh37	6	112041026	112041026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	27	418	1	ENST00000368678.4:c.229C>T	p.Arg77Cys	p.R77C	ENST00000368678		77	Cgt/Tgt																																																																														
FLT3	0	MSKCC	GRCh37	13	28623545	28623545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	28	541	0	ENST00000241453.7:c.1012C>G	p.Gln338Glu	p.Q338E	ENST00000241453	NM_004119.2	338	Caa/Gaa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37883606	37883608	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0024099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	67	764	1	ENST00000269571.5:c.3219_3221del	p.Pro1074del	p.P1074del	ENST00000269571		1073	tCTCca/tca																																																																														
BAP1	0	MSKCC	GRCh37	3	52441274	52441274	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	65	546	0	ENST00000460680.1:c.496G>T	p.Glu166Ter	p.E166*	ENST00000460680	NM_004656.3	166	Gag/Tag																																																																														
IKBKE	0	MSKCC	GRCh37	1	206650051	206650051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	118	736	1	ENST00000367120.3:c.571C>T	p.Arg191Ter	p.R191*	ENST00000367120	NM_014002.3	191	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	698	783	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5211652	5211652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	180	808	2	ENST00000357368.4:c.5183G>A	p.Arg1728Gln	p.R1728Q	ENST00000357368	NM_002850.3	1728	cGg/cAg																																																																														
JAK2	0	MSKCC	GRCh37	9	5072577	5072577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1902	117	663	0	ENST00000381652.3:c.1727C>T	p.Thr576Ile	p.T576I	ENST00000381652	NM_004972.3	576	aCa/aTa																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	41	509	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	27	508	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	20	348	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	35	214	0	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																														
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	48	455	1	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	13	355	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	38	561	0	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	59	247	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	35	256	0	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	34	493	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	26	592	3	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
SPOP	0	MSKCC	GRCh37	17	47696462	47696462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	36	380	0	ENST00000347630.2:c.361C>T	p.Arg121Trp	p.R121W	ENST00000347630	NM_001007230.1	121	Cgg/Tgg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151900080	151900081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	32	431	0	ENST00000262189.6:c.4030dup	p.Ile1344AsnfsTer11	p.I1344Nfs*11	ENST00000262189	NM_170606.2	1344	ata/aAta																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023247	27023248	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	46	120	0	ENST00000324856.7:c.353_354del	p.Thr118ArgfsTer281	p.T118Rfs*281	ENST00000324856	NM_006015.4	118	aCG/a																																																																														
PTEN	0	MSKCC	GRCh37	10	89717690	89717691	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	118	421	0	ENST00000371953.3:c.716dup	p.Met239IlefsTer4	p.M239Ifs*4	ENST00000371953	NM_000314.4	239	atg/aTtg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258104	123258104	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	11	484	0	ENST00000358487.5:c.1577A>C	p.Lys526Thr	p.K526T	ENST00000358487	NM_000141.4	526	aAa/aCa																																																																														
TBX3	0	MSKCC	GRCh37	12	115118778	115118778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	29	520	0	ENST00000257566.3:c.563C>T	p.Pro188Leu	p.P188L	ENST00000257566	NM_016569.3	188	cCg/cTg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32929161	32929162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	10	406	0	ENST00000380152.3:c.7177dup	p.Met2393AsnfsTer19	p.M2393Nfs*19	ENST00000380152		2391	gaa/gAaa																																																																														
TRAF7	0	MSKCC	GRCh37	16	2226098	2226098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	42	581	0	ENST00000326181.6:c.1795G>A	p.Val599Met	p.V599M	ENST00000326181	NM_032271.2	599	Gtg/Atg																																																																														
RNF43	0	MSKCC	GRCh37	17	56435168	56435168	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	10	510	0	ENST00000407977.2:c.1969del	p.Arg657GlyfsTer43	p.R657Gfs*43	ENST00000407977		657	Cgg/gg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5243975	5243975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	14	500	2	ENST00000357368.4:c.1507G>A	p.Ala503Thr	p.A503T	ENST00000357368	NM_002850.3	503	Gcc/Acc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965931	25965931	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	28	508	0	ENST00000435504.4:c.3275A>G	p.His1092Arg	p.H1092R	ENST00000435504		1092	cAc/cGc																																																																														
MYD88	0	MSKCC	GRCh37	3	38180350	38180350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	26	540	0	ENST00000396334.3:c.198G>T	p.Glu66Asp	p.E66D	ENST00000396334	NM_002468.4	66	gaG/gaT																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56181768	56181768	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	56	305	0	ENST00000399503.3:c.3992T>A	p.Val1331Glu	p.V1331E	ENST00000399503	NM_005921.1	1331	gTg/gAg																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149514435	149514435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	26	524	0	ENST00000261799.4:c.509C>A	p.Pro170His	p.P170H	ENST00000261799	NM_002609.3	170	cCt/cAt																																																																														
SMO	0	MSKCC	GRCh37	7	128843383	128843383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	34	487	0	ENST00000249373.3:c.490C>T	p.Pro164Ser	p.P164S	ENST00000249373	NM_005631.4	164	Cct/Tct																																																																														
LYN	0	MSKCC	GRCh37	8	56882315	56882315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	62	468	0	ENST00000519728.1:c.1013A>G	p.Lys338Arg	p.K338R	ENST00000519728	NM_002350.3	338	aAa/aGa																																																																														
EGFL7	0	MSKCC	GRCh37	9	139566407	139566407	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024106-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	26	495	0	ENST00000308874.7:c.666del	p.His222GlnfsTer32	p.H222Qfs*32	ENST00000308874		222	caC/ca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	176	694	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879854	37879854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	416	961	0	ENST00000269571.5:c.2149G>A	p.Glu717Lys	p.E717K	ENST00000269571		717	Gag/Aag																																																																														
ELF3	0	MSKCC	GRCh37	1	201980383	201980394	+	inframe_deletion	In_Frame_Del	DEL	TGGTACTGACCC	TGGTACTGACCC	-			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	184	1156	2	ENST00000359651.3:c.121_132del	p.Val41_Leu44del	p.V41_L44del	ENST00000359651		40	tTGGTACTGACCCtg/ttg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112590	115112590	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	182	983	1	ENST00000257566.3:c.1150G>T	p.Glu384Ter	p.E384*	ENST00000257566	NM_016569.3	384	Gag/Tag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061349	38061349	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	222	881	0	ENST00000250448.2:c.640T>A	p.Trp214Arg	p.W214R	ENST00000250448	NM_004496.3	214	Tgg/Agg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881329	37881329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	430	984	0	ENST00000269571.5:c.2521C>A	p.Leu841Ile	p.L841I	ENST00000269571		841	Ctc/Atc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259171	36259171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	148	767	0	ENST00000300305.3:c.320G>T	p.Arg107Leu	p.R107L	ENST00000300305		107	cGc/cTc																																																																														
EGFR	0	MSKCC	GRCh37	7	55220349	55220349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	280	876	4	ENST00000275493.2:c.739G>T	p.Asp247Tyr	p.D247Y	ENST00000275493	NM_005228.3	247	Gac/Tac																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860665	151860690	+	frameshift_variant	Frame_Shift_Del	DEL	GTAAACTGGGCATTCTAACAGGGCTA	GTAAACTGGGCATTCTAACAGGGCTA	-			P-0024107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	293	841	0	ENST00000262189.6:c.9972_9997del	p.Ser3325TrpfsTer17	p.S3325Wfs*17	ENST00000262189	NM_170606.2	3324	acTAGCCCTGTTAGAATGCCCAGTTTACct/acct																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024112-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	130	838	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	92	691	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	123	923	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0024128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	61	731	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
MYC	0	MSKCC	GRCh37	8	128752961	128752962	+	inframe_insertion	In_Frame_Ins	INS	-	-	AACGTCTTGGAGCGCCAGAGGAGG			P-0024128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	34	663	0	ENST00000377970.2:c.1127_1150dup	p.Val376_Asn383dup	p.V376_N383dup	ENST00000377970	NM_002467.4	376	-/AACGTCTTGGAGCGCCAGAGGAGG																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0024129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	484	511	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
PTEN	0	MSKCC	GRCh37	10	89653842	89653842	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	440	546	0	ENST00000371953.3:c.141delG	p.Asn48ThrfsTer6	p.N48Tfs*6	ENST00000371953	NM_000314.4	47	aGg/ag																																																																														
WWTR1	0	MSKCC	GRCh37	3	149260316	149260316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	479	698	4	ENST00000360632.3:c.577C>A	p.His193Asn	p.H193N	ENST00000360632	NM_015472.4	193	Cac/Aac																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0024131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	180	624	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PTEN	0	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	27	496	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag																																																																														
MGA	0	MSKCC	GRCh37	15	42041734	42041734	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	82	520	0	ENST00000219905.7:c.5929C>T	p.Gln1977Ter	p.Q1977*	ENST00000219905	NM_001164273.1	1977	Cag/Tag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509627	106509627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	39	572	1	ENST00000359195.3:c.1621G>A	p.Asp541Asn	p.D541N	ENST00000359195	NM_002649.2	541	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0024132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	327	872	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458120	120458120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	212	686	1	ENST00000256646.2:c.7225C>T	p.Gln2409Ter	p.Q2409*	ENST00000256646	NM_024408.3	2409	Cag/Tag																																																																														
NF2	0	MSKCC	GRCh37	22	30038260	30038260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	110	628	1	ENST00000338641.4:c.433G>A	p.Ala145Thr	p.A145T	ENST00000338641	NM_000268.3	145	Gcc/Acc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78599548	78599548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	127	630	2	ENST00000306801.3:c.220G>A	p.Asp74Asn	p.D74N	ENST00000306801	NM_020761.2	74	Gat/Aat																																																																														
ABL1	0	MSKCC	GRCh37	9	133759398	133759398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024132-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	85	792	0	ENST00000318560.5:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000318560	NM_005157.4	574	cGa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	110	666	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
AKT3	0	MSKCC	GRCh37	1	243716070	243716070	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	98	813	0	ENST00000263826.5:c.1124C>A	p.Ser375Ter	p.S375*	ENST00000263826	NM_005465.4	375	tCa/tAa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436109	49436109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024134-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	24	335	0	ENST00000301067.7:c.5872C>T	p.Arg1958Cys	p.R1958C	ENST00000301067	NM_003482.3	1958	Cgc/Tgc																																																																														
AKT1	0	MSKCC	GRCh37	14	105243048	105243049	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGGCAGCGGATGATGAAGGTGTTGGGCCGGGGCCGCTCCGT			P-0024135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	63	902	0	ENST00000349310.3:c.193_234dup	p.Thr65_Leu78dup	p.T65_L78dup	ENST00000349310	NM_001014432.1	65	-/ACGGAGCGGCCCCGGCCCAACACCTTCATCATCCGCTGCCTG																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177027	56177031	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAA	TGGAA	-			P-0024135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	69	674	0	ENST00000399503.3:c.2298_2302del	p.Leu766PhefsTer4	p.L766Ffs*4	ENST00000399503	NM_005921.1	766	tTGGAA/t																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177549	56177552	+	frameshift_variant	Frame_Shift_Del	DEL	TGAG	TGAG	-			P-0024135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	52	618	0	ENST00000399503.3:c.2524_2527del	p.Ser842PhefsTer14	p.S842Ffs*14	ENST00000399503	NM_005921.1	841	cTGAGt/ct																																																																														
PTEN	0	MSKCC	GRCh37	10	89692820	89692820	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	16	320	0	ENST00000371953.3:c.306delA	p.Lys102AsnfsTer11	p.K102Nfs*11	ENST00000371953	NM_000314.4	102	Aaa/aa																																																																														
TP53	0	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	293	686	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																														
POLE	0	MSKCC	GRCh37	12	133219461	133219461	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	183	780	0	ENST00000320574.5:c.4673A>G	p.Glu1558Gly	p.E1558G	ENST00000320574	NM_006231.2	1558	gAa/gGa																																																																														
LATS2	0	MSKCC	GRCh37	13	21562750	21562750	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	57	492	0	ENST00000382592.4:c.1169del	p.Pro390ArgfsTer43	p.P390Rfs*43	ENST00000382592	NM_014572.2	390	cCg/cg																																																																														
TRAF7	0	MSKCC	GRCh37	16	2213995	2213995	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	237	673	1	ENST00000326181.6:c.74C>A	p.Thr25Asn	p.T25N	ENST00000326181	NM_032271.2	25	aCc/aAc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45871984	45871985	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	125	567	1	ENST00000391945.4:c.263_264delinsTT	p.Arg88Leu	p.R88L	ENST00000391945	NM_000400.3	88	cGA/cTT																																																																														
SOS1	0	MSKCC	GRCh37	2	39278347	39278347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	58	763	0	ENST00000402219.2:c.802G>C	p.Glu268Gln	p.E268Q	ENST00000402219	NM_005633.3	268	Gaa/Caa																																																																														
CXCR4	0	MSKCC	GRCh37	2	136873163	136873164	+	missense_variant	Missense_Mutation	DNP	AC	AC	TA			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	97	447	0	ENST00000241393.3:c.334_335delinsTA	p.Val112Tyr	p.V112Y	ENST00000241393	NM_003467.2	112	GTc/TAc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023570	31023570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	124	525	0	ENST00000375687.4:c.3055A>G	p.Arg1019Gly	p.R1019G	ENST00000375687	NM_015338.5	1019	Aga/Gga																																																																														
PRDM14	0	MSKCC	GRCh37	8	70978617	70978617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	405	702	0	ENST00000276594.2:c.1036G>C	p.Gly346Arg	p.G346R	ENST00000276594	NM_024504.3	346	Ggg/Cgg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139393429	139393429	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	175	655	1	ENST00000277541.6:c.6102G>A	p.Trp2034Ter	p.W2034*	ENST00000277541	NM_017617.3	2034	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	121	704	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0024139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	51	432	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0024139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	54	494	0	ENST00000371953.3:c.209+1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																																																															
FLT3	0	MSKCC	GRCh37	13	28626708	28626708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	79	561	0	ENST00000241453.7:c.588G>A	p.Trp196Ter	p.W196*	ENST00000241453	NM_004119.2	196	tgG/tgA																																																																														
IRS2	0	MSKCC	GRCh37	13	110437365	110437365	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	15	136	0	ENST00000375856.3:c.1036A>T	p.Ser346Cys	p.S346C	ENST00000375856	NM_003749.2	346	Agc/Tgc																																																																														
BARD1	0	MSKCC	GRCh37	2	215645820	215645820	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024139-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	71	603	0	ENST00000260947.4:c.778T>A	p.Leu260Ile	p.L260I	ENST00000260947	NM_000465.2	260	Tta/Ata																																																																														
TP53	0	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	117	754	1	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	293	525	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0024141-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	27	476	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0024151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	159	1116	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921510	39921510	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0024151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	650	602	0	ENST00000378444.4:c.4310C>G	p.Ser1437Ter	p.S1437*	ENST00000378444	NM_001123385.1	1437	tCa/tGa																																																																														
ARID5B	0	MSKCC	GRCh37	10	63845586	63845586	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	327	516	0	ENST00000279873.7:c.1325A>T	p.Lys442Ile	p.K442I	ENST00000279873	NM_032199.2	442	aAa/aTa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41267306	41267306	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024151-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	338	792	0	ENST00000349496.5:c.890C>G	p.Thr297Arg	p.T297R	ENST00000349496	NM_001904.3	297	aCg/aGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	71	716	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0024155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	161	914	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
NUF2	0	MSKCC	GRCh37	1	163325165	163325165	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	94	581	0	ENST00000271452.3:c.1301A>G	p.His434Arg	p.H434R	ENST00000271452	NM_145697.2	434	cAc/cGc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265672	41266192	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTG	ACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTG	-			P-0024155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	132	219	0	ENST00000349496.5:c.13+100_189del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
PNRC1	0	MSKCC	GRCh37	6	89793765	89793765	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	118	685	0	ENST00000336032.3:c.834T>A	p.Asn278Lys	p.N278K	ENST00000336032	NM_006813.2	278	aaT/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	530	773	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7979562	7979562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	421	681	0	ENST00000319144.4:c.1463G>T	p.Arg488Leu	p.R488L	ENST00000319144	NM_001139.2	488	cGt/cTt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41245466	41245466	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	719	896	0	ENST00000357654.3:c.2082del	p.Ser694ArgfsTer7	p.S694Rfs*7	ENST00000357654	NM_007294.3	694	agC/ag																																																																														
NCOA3	0	MSKCC	GRCh37	20	46276090	46276090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024215-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	139	571	2	ENST00000371998.3:c.3526C>T	p.Gln1176Ter	p.Q1176*	ENST00000371998		1176	Cag/Tag																																																																														
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0024301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	124	403	0				ENST00000310581	NM_198253.2																																																																																
FLT3	0	MSKCC	GRCh37	13	28623860	28623860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	236	614	0	ENST00000241453.7:c.794G>A	p.Gly265Glu	p.G265E	ENST00000241453	NM_004119.2	265	gGg/gAg																																																																														
BABAM1	0	MSKCC	GRCh37	19	17379701	17379701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	290	745	0	ENST00000359435.4:c.86C>T	p.Ser29Phe	p.S29F	ENST00000359435	NM_001033549.1	29	tCc/tTc																																																																														
DIS3	0	MSKCC	GRCh37	13	73337632	73337632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	165	387	0	ENST00000377767.4:c.2084C>T	p.Pro695Leu	p.P695L	ENST00000377767	NM_014953.3	695	cCt/cTt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18272142	18272142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	10	42	0	ENST00000222254.8:c.652C>T	p.Arg218Cys	p.R218C	ENST00000222254	NM_005027.3	218	Cgc/Tgc																																																																														
PPP6C	0	MSKCC	GRCh37	9	127933383	127933383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	137	653	0	ENST00000373547.4:c.152G>A	p.Cys51Tyr	p.C51Y	ENST00000373547	NM_002721.4	51	tGt/tAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	124	435	1				ENST00000310581	NM_198253.2																																																																																
NOTCH1	0	MSKCC	GRCh37	9	139399191	139399191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	235	578	0	ENST00000277541.6:c.4952C>T	p.Ser1651Leu	p.S1651L	ENST00000277541	NM_017617.3	1651	tCg/tTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500886	8500886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	256	621	0	ENST00000356435.5:c.1996C>T	p.Pro666Ser	p.P666S	ENST00000356435		666	Cct/Tct																																																																														
ROS1	0	MSKCC	GRCh37	6	117641144	117641144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	290	674	0	ENST00000368508.3:c.5827G>A	p.Glu1943Lys	p.E1943K	ENST00000368508	NM_002944.2	1943	Gaa/Aaa																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	566	512	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
ATR	0	MSKCC	GRCh37	3	142176561	142176561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	338	554	0	ENST00000350721.4:c.7540C>T	p.Arg2514Cys	p.R2514C	ENST00000350721	NM_001184.3	2514	Cgc/Tgc																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42866442	42866442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	126	847	0	ENST00000398585.3:c.190C>T	p.Pro64Ser	p.P64S	ENST00000398585	NM_001135099.1	64	Ccc/Tcc																																																																														
PAK7	0	MSKCC	GRCh37	20	9547004	9547004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	93	273	0	ENST00000353224.5:c.1018C>T	p.Leu340Phe	p.L340F	ENST00000353224	NM_177990.2	340	Ctc/Ttc																																																																														
ROS1	0	MSKCC	GRCh37	6	117674200	117674200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	282	741	0	ENST00000368508.3:c.4274G>A	p.Arg1425Lys	p.R1425K	ENST00000368508	NM_002944.2	1425	aGg/aAg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53228066	53228066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			51	189	313	0	ENST00000375401.3:c.2248C>T	p.Arg750Trp	p.R750W	ENST00000375401	NM_004187.3	750	Cgg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16258764	16258764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	34	460	0	ENST00000375759.3:c.6029G>A	p.Arg2010His	p.R2010H	ENST00000375759	NM_015001.2	2010	cGt/cAt																																																																														
GATA3	0	MSKCC	GRCh37	10	8105964	8105964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	142	480	0	ENST00000346208.3:c.784G>A	p.Glu262Lys	p.E262K	ENST00000346208		262	Gag/Aag																																																																														
CDK12	0	MSKCC	GRCh37	17	37671991	37671991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	228	551	0	ENST00000447079.4:c.2776C>T	p.Leu926Phe	p.L926F	ENST00000447079	NM_015083.1	926	Ctt/Ttt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2223423	2223424	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	134	541	1	ENST00000398665.3:c.3534_3535delinsTT	p.His1179Tyr	p.H1179Y	ENST00000398665	NM_032482.2	1178	gcACac/gcTTac																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15292564	15292564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	123	684	0	ENST00000263388.2:c.2615C>T	p.Ser872Phe	p.S872F	ENST00000263388	NM_000435.2	872	tCc/tTc																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792394	33792394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	119	801	0	ENST00000498907.2:c.927G>C	p.Glu309Asp	p.E309D	ENST00000498907	NM_004364.3	309	gaG/gaC																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211667	36211667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	61	484	0	ENST00000222270.7:c.1418C>T	p.Pro473Leu	p.P473L	ENST00000222270	NM_014727.1	473	cCc/cTc																																																																														
CIC	0	MSKCC	GRCh37	19	42799250	42799251	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024305-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	68	572	1	ENST00000575354.2:c.4734_4735delinsTT	p.Pro1579Ser	p.P1579S	ENST00000575354	NM_015125.3	1578	ccCCca/ccTTca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	407	685	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	25	419	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
APC	0	MSKCC	GRCh37	5	112175466	112175466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	277	348	0	ENST00000257430.4:c.4175C>A	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tCa/tAa																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114760	73114760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	16	177	0	ENST00000356692.5:c.1141G>A	p.Glu381Lys	p.E381K	ENST00000356692		381	Gaa/Aaa																																																																														
MYCL1	0	MSKCC	GRCh37	1	40367512	40367512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	16	37	0	ENST00000397332.2:c.49G>A	p.Gly17Ser	p.G17S	ENST00000397332	NM_001033082.2	17	Ggt/Agt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920446	114920446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	176	545	0	ENST00000543371.1:c.1387T>C	p.Cys463Arg	p.C463R	ENST00000543371	NM_001198531.1	463	Tgc/Cgc																																																																														
RASA1	0	MSKCC	GRCh37	5	86682685	86682685	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	86	399	1	ENST00000274376.6:c.2890A>T	p.Lys964Ter	p.K964*	ENST00000274376	NM_002890.2	964	Aaa/Taa																																																																														
PREX2	0	MSKCC	GRCh37	8	68989672	68989672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	271	708	0	ENST00000288368.4:c.1610T>C	p.Val537Ala	p.V537A	ENST00000288368	NM_024870.2	537	gTt/gCt																																																																														
ATRX	0	MSKCC	GRCh37	X	76938212	76938212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	146	727	0	ENST00000373344.5:c.2536G>A	p.Asp846Asn	p.D846N	ENST00000373344	NM_000489.3	846	Gat/Aat																																																																														
PGR	0	MSKCC	GRCh37	11	100920786	100920786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024313-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	75	472	6	ENST00000325455.5:c.2362C>T	p.Arg788Trp	p.R788W	ENST00000325455	NM_001202474.3	788	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	62	645	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	79	809	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061904	38061904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	83	783	0	ENST00000250448.2:c.85G>A	p.Val29Ile	p.V29I	ENST00000250448	NM_004496.3	29	Gtc/Atc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467865	66467865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	34	414	0	ENST00000273854.3:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000273854	NM_004439.5	135	cGg/cAg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533790	63533790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	53	609	1	ENST00000307078.5:c.1364C>T	p.Pro455Leu	p.P455L	ENST00000307078	NM_004655.3	455	cCa/cTa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144147	11144147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	336	722	1	ENST00000344626.4:c.3728G>A	p.Arg1243Gln	p.R1243Q	ENST00000344626	NM_003072.3	1243	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	109	664	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
CUL3	0	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	50	612	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																																																														
SUZ12	0	MSKCC	GRCh37	17	30264486	30264486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	46	545	0	ENST00000322652.5:c.221C>A	p.Pro74Gln	p.P74Q	ENST00000322652	NM_015355.2	74	cCg/cAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879498	151879498	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	56	516	0	ENST00000262189.6:c.5447del	p.Asn1816MetfsTer33	p.N1816Mfs*33	ENST00000262189	NM_170606.2	1816	aAt/at																																																																														
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011107-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	175	721	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																														
EGFR	0	MSKCC	GRCh37	7	55233043	55233043	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs139236063		P-0011107-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			388	167	645	0	ENST00000275493.2:c.1793G>T	p.Gly598Val	p.G598V	ENST00000275493	NM_005228.3	598	gGa/gTa																																																																														
EGFR	0	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011107-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	132	527	0	ENST00000275493.2:c.2500G>T	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ttg																																																																														
FGF3	0	MSKCC	GRCh37	11	69625282	69625282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011107-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	336	857	0	ENST00000334134.2:c.511C>T	p.Arg171Cys	p.R171C	ENST00000334134	NM_005247.2	171	Cgc/Tgc																																																																														
MGA	0	MSKCC	GRCh37	15	42002948	42002948	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011107-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			238	237	657	0	ENST00000219905.7:c.2485G>T	p.Glu829Ter	p.E829*	ENST00000219905	NM_001164273.1	829	Gaa/Taa																																																																														
ATRX	0	MSKCC	GRCh37	X	76890102	76890102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011107-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	205	648	0	ENST00000373344.5:c.4792C>A	p.Leu1598Ile	p.L1598I	ENST00000373344	NM_000489.3	1598	Ctt/Att																																																																														
ATRX	0	MSKCC	GRCh37	X	76939099	76939099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011107-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	184	611	0	ENST00000373344.5:c.1649G>T	p.Ser550Ile	p.S550I	ENST00000373344	NM_000489.3	550	aGt/aTt																																																																														
ERCC2	0	MSKCC	GRCh37	19	45858018	45858019	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0011107-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	144	800	1	ENST00000391945.4:c.1634_1635delinsAT	p.Met545Asn	p.M545N	ENST00000391945	NM_000400.3	545	aTG/aAT																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713759	30713759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011107-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			191	150	575	1	ENST00000359013.4:c.1159C>T	p.His387Tyr	p.H387Y	ENST00000359013	NM_001024847.2	387	Cac/Tac																																																																														
PREX2	0	MSKCC	GRCh37	8	69020504	69020504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011107-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	421	748	2	ENST00000288368.4:c.2876G>A	p.Gly959Asp	p.G959D	ENST00000288368	NM_024870.2	959	gGt/gAt																																																																														
ATRX	0	MSKCC	GRCh37	X	76937596	76937600	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCT	TCTCT	-			P-0021914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	141	493	0	ENST00000373344.5:c.3148_3152delAGAGA	p.Arg1050Ter	p.R1050*	ENST00000373344	NM_000489.3	1050	AGAGAt/t																																																																														
IGF1R	0	MSKCC	GRCh37	15	99486217	99486217	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	197	717	0	ENST00000268035.6:c.3525delC	p.Val1176CysfsTer69	p.V1176Cfs*69	ENST00000268035	NM_000875.3	1175	Ccc/cc																																																																														
NF2	0	MSKCC	GRCh37	22	30032808	30032808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	45	436	0	ENST00000338641.4:c.183delC	p.Phe62LeufsTer61	p.F62Lfs*61	ENST00000338641	NM_000268.3	61	ttC/tt																																																																														
AR	0	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	311	316	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829761	72829761	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	480	897	0	ENST00000268489.5:c.6820C>T	p.Gln2274Ter	p.Q2274*	ENST00000268489	NM_006885.3	2274	Caa/Taa																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186506954	186506954	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	203	354	0	ENST00000323963.5:c.1120A>G	p.Ile374Val	p.I374V	ENST00000323963		374	Ata/Gta																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922894	44922894	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	341	324	0	ENST00000377967.4:c.1757delG	p.Gly586GlufsTer7	p.G586Efs*7	ENST00000377967	NM_021140.2	585	ctG/ct																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0024047-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1828	148	553	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024047-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			546	156	667	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023280	27023284	+	frameshift_variant	Frame_Shift_Del	DEL	GCGAT	GCGAT	-			P-0024047-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			245	16	193	0	ENST00000324856.7:c.387_391del	p.Ser129ArgfsTer269	p.S129Rfs*269	ENST00000324856	NM_006015.4	129	aGCGAT/a																																																																														
CCND2	0	MSKCC	GRCh37	12	4383231	4383231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024047-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			294	38	384	0	ENST00000261254.3:c.25G>A	p.Asp9Asn	p.D9N	ENST00000261254	NM_001759.3	9	Gac/Aac																																																																														
FAT1	0	MSKCC	GRCh37	4	187517753	187517753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024047-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			195	28	207	1	ENST00000441802.2:c.12941C>T	p.Ser4314Leu	p.S4314L	ENST00000441802	NM_005245.3	4314	tCa/tTa																																																																														
DICER1	0	MSKCC	GRCh37	14	95562363	95562363	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024047-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			432	29	453	0	ENST00000343455.3:c.4894T>C	p.Ser1632Pro	p.S1632P	ENST00000343455	NM_177438.2	1632	Tct/Cct																																																																														
BCOR	0	MSKCC	GRCh37	X	39923207	39923207	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0024047-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	32	420	0	ENST00000378444.4:c.3503-2A>G		p.X1168_splice	ENST00000378444	NM_001123385.1	1168																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	184	584	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	262	731	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	129	298	0	ENST00000257430.4:c.3904delC	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031864	10031864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	408	819	3	ENST00000330684.3:c.959G>T	p.Cys320Phe	p.C320F	ENST00000330684	NM_001134407.1	320	tGc/tTc																																																																														
SUZ12	0	MSKCC	GRCh37	17	30302723	30302723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	121	549	0	ENST00000322652.5:c.814G>T	p.Glu272Ter	p.E272*	ENST00000322652	NM_015355.2	272	Gaa/Taa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554281	63554281	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	293	859	0	ENST00000307078.5:c.458C>G	p.Thr153Ser	p.T153S	ENST00000307078	NM_004655.3	153	aCc/aGc																																																																														
APC	0	MSKCC	GRCh37	5	112174372	112174372	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	94	370	0	ENST00000257430.4:c.3081del	p.Tyr1027Ter	p.Y1027*	ENST00000257430	NM_000038.5	1027	taT/ta																																																																														
HGF	0	MSKCC	GRCh37	7	81358998	81358998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024162-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	162	737	0	ENST00000222390.5:c.963G>A	p.Trp321Ter	p.W321*	ENST00000222390	NM_000601.4	321	tgG/tgA																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467083	25467083	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	156	592	3	ENST00000264709.3:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000264709	NM_175629.2	598	Cga/Tga																																																																														
JAK1	0	MSKCC	GRCh37	1	65305319	65305319	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	56	655	0	ENST00000342505.4:c.2809A>T	p.Ile937Phe	p.I937F	ENST00000342505	NM_002227.2	937	Att/Ttt																																																																														
POLE	0	MSKCC	GRCh37	12	133210847	133210847	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	31	717	3	ENST00000320574.5:c.5929G>T	p.Glu1977Ter	p.E1977*	ENST00000320574	NM_006231.2	1977	Gaa/Taa																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469986	25469987	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTGCAAAAC			P-0024177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	125	564	0	ENST00000264709.3:c.1047_1055dup	p.Cys351_Ser352insArgPheCys	p.C351_S352insRFC	ENST00000264709	NM_175629.2	352	agt/agGTTTTGCAGt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942030	44942030	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	78	403	0	ENST00000377967.4:c.3284del	p.Lys1095SerfsTer9	p.K1095Sfs*9	ENST00000377967	NM_021140.2	1094	Aaa/aa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	859	578	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	217	651	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44896902	44896902	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	35	648	0	ENST00000377967.4:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000377967	NM_021140.2	208	Caa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101699	27101699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	42	760	0	ENST00000324856.7:c.4981A>G	p.Met1661Val	p.M1661V	ENST00000324856	NM_006015.4	1661	Atg/Gtg																																																																														
RPTOR	0	MSKCC	GRCh37	17	78599506	78599506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	64	497	0	ENST00000306801.3:c.178G>A	p.Val60Ile	p.V60I	ENST00000306801	NM_020761.2	60	Gtt/Att																																																																														
NCOA3	0	MSKCC	GRCh37	20	46267862	46267862	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	66	650	0	ENST00000371998.3:c.2623G>A	p.Ala875Thr	p.A875T	ENST00000371998		875	Gct/Act																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468251	50468251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	413	610	0	ENST00000331340.3:c.1486G>T	p.Gly496Cys	p.G496C	ENST00000331340	NM_006060.4	496	Ggc/Tgc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412344	63412344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	98	686	0	ENST00000330258.3:c.823G>C	p.Ala275Pro	p.A275P	ENST00000330258	NM_152424.3	275	Gcc/Ccc																																																																														
TP53	0	MSKCC	GRCh37	17	7579357	7579358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGAAAC			P-0024183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	47	767	0	ENST00000269305.4:c.323_329dup	p.Leu111PhefsTer40	p.L111Ffs*40	ENST00000269305	NM_001126112.2	110	cgt/cgGTTTCCGt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251977	153251978	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TTTATTAC			P-0024183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	58	731	0	ENST00000281708.4:c.1021_1028dup	p.Pro344Ter	p.P344*	ENST00000281708	NM_033632.3	343	aaa/aaGTAATAAAa																																																																														
MDM2	0	MSKCC	GRCh37	12	69233129	69233129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	43	476	0	ENST00000462284.1:c.994C>G	p.Arg332Gly	p.R332G	ENST00000462284	NM_002392.5	332	Cgt/Ggt																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134857	41134857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	47	620	0	ENST00000379561.5:c.771G>A	p.Met257Ile	p.M257I	ENST00000379561	NM_002015.3	257	atG/atA																																																																														
CRKL	0	MSKCC	GRCh37	22	21288306	21288306	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	48	739	0	ENST00000354336.3:c.551C>G	p.Ser184Cys	p.S184C	ENST00000354336	NM_005207.3	184	tCc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	118	404	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	473	805	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862896	9862896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	241	701	1	ENST00000330684.3:c.2407G>A	p.Glu803Lys	p.E803K	ENST00000330684	NM_001134407.1	803	Gag/Aag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	151	540	2	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																																																														
BRD4	0	MSKCC	GRCh37	19	15355048	15355048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	281	786	0	ENST00000263377.2:c.2575C>T	p.Pro859Ser	p.P859S	ENST00000263377	NM_058243.2	859	Cct/Tct																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713470	40713470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	196	715	1	ENST00000373198.4:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000373198	NM_133170.3	1349	Cgt/Tgt																																																																														
EPHA3	2042	MSKCC	GRCh37	3	89498444	89498444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	173	527	3	ENST00000336596.2:c.2416G>A	p.Asp806Asn	p.D806N	ENST00000336596	NM_005233.5	806	Gat/Aat																																																																														
MDM2	0	MSKCC	GRCh37	12	69230522	69230522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	161	541	0	ENST00000462284.1:c.911C>T	p.Ser304Phe	p.S304F	ENST00000462284	NM_002392.5	304	tCc/tTc																																																																														
RRAS2	0	MSKCC	GRCh37	11	14317346	14317346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	258	720	0	ENST00000256196.4:c.164G>A	p.Cys55Tyr	p.C55Y	ENST00000256196		55	tGt/tAt																																																																														
FGF19	0	MSKCC	GRCh37	11	69514080	69514080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	260	721	2	ENST00000294312.3:c.601G>A	p.Gly201Arg	p.G201R	ENST00000294312	NM_005117.2	201	Ggg/Agg																																																																														
RAB35	0	MSKCC	GRCh37	12	120536951	120536951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	204	600	1	ENST00000229340.5:c.235C>T	p.Arg79Trp	p.R79W	ENST00000229340	NM_006861.6	79	Cgg/Tgg																																																																														
AXIN1	0	MSKCC	GRCh37	16	396856	396856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	231	652	1	ENST00000262320.3:c.170C>T	p.Ser57Leu	p.S57L	ENST00000262320	NM_003502.3	57	tCg/tTg																																																																														
NF1	0	MSKCC	GRCh37	17	29677263	29677263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	207	560	1	ENST00000358273.4:c.7384C>T	p.Leu2462Phe	p.L2462F	ENST00000358273	NM_001042492.2	2462	Ctt/Ttt																																																																														
BRIP1	0	MSKCC	GRCh37	17	59857657	59857657	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	185	481	0	ENST00000259008.2:c.1900C>T	p.Gln634Ter	p.Q634*	ENST00000259008	NM_032043.2	634	Cag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097212	11097235	+	inframe_deletion	In_Frame_Del	DEL	GGCCCTGGCCCCGGCCCGGGTCCC	GGCCCTGGCCCCGGCCCGGGTCCC	-			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	263	639	0	ENST00000344626.4:c.708_731del	p.Gly237_Pro244del	p.G237_P244del	ENST00000344626	NM_003072.3	235	GGCCCTGGCCCCGGCCCGGGTCCC/-																																																																														
ALK	0	MSKCC	GRCh37	2	29462550	29462550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	179	543	0	ENST00000389048.3:c.2351C>T	p.Pro784Leu	p.P784L	ENST00000389048	NM_004304.4	784	cCc/cTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827991	40827991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	204	533	0	ENST00000373198.4:c.2437G>A	p.Ala813Thr	p.A813T	ENST00000373198	NM_133170.3	813	Gcc/Acc																																																																														
MLH1	0	MSKCC	GRCh37	3	37070358	37070358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	174	558	0	ENST00000231790.2:c.1493G>A	p.Arg498Lys	p.R498K	ENST00000231790	NM_000249.3	498	aGa/aAa																																																																														
APC	0	MSKCC	GRCh37	5	112155002	112155002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	219	687	1	ENST00000257430.4:c.1273G>A	p.Glu425Lys	p.E425K	ENST00000257430	NM_000038.5	425	Gaa/Aaa																																																																														
APC	0	MSKCC	GRCh37	5	112155005	112155005	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200598389		P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	213	675	2	ENST00000257430.4:c.1276G>T	p.Ala426Ser	p.A426S	ENST00000257430	NM_000038.5	426	Gct/Tct																																																																														
FLT4	0	MSKCC	GRCh37	5	180035999	180035999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	306	804	1	ENST00000261937.6:c.3862G>A	p.Glu1288Lys	p.E1288K	ENST00000261937	NM_182925.4	1288	Gag/Aag																																																																														
ROS1	0	MSKCC	GRCh37	6	117717362	117717362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	150	504	0	ENST00000368508.3:c.845C>T	p.Ser282Leu	p.S282L	ENST00000368508	NM_002944.2	282	tCa/tTa																																																																														
ROS1	0	MSKCC	GRCh37	6	117718148	117718148	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	237	653	1	ENST00000368508.3:c.709C>T	p.Gln237Ter	p.Q237*	ENST00000368508	NM_002944.2	237	Caa/Taa																																																																														
PREX2	0	MSKCC	GRCh37	8	68972955	68972955	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141759315		P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	198	564	0	ENST00000288368.4:c.1280G>A	p.Arg427Lys	p.R427K	ENST00000288368	NM_024870.2	427	aGg/aAg																																																																														
PREX2	0	MSKCC	GRCh37	8	69046405	69046405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	235	691	0	ENST00000288368.4:c.3878G>A	p.Ser1293Asn	p.S1293N	ENST00000288368	NM_024870.2	1293	aGc/aAc																																																																														
TRAF2	0	MSKCC	GRCh37	9	139818414	139818415	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0024188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	211	676	2	ENST00000247668.2:c.1249_1250delinsTT	p.Pro417Leu	p.P417L	ENST00000247668	NM_021138.3	417	CCg/TTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0024189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	36	562	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0024189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	670	664	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
IRS2	0	MSKCC	GRCh37	13	110436296	110436296	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	25	179	0	ENST00000375856.3:c.2105T>C	p.Val702Ala	p.V702A	ENST00000375856	NM_003749.2	702	gTg/gCg																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	39	657	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	99	724	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
RB1	0	MSKCC	GRCh37	13	48955419	48955419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	260	528	1	ENST00000267163.4:c.1535T>A	p.Leu512Ter	p.L512*	ENST00000267163	NM_000321.2	512	tTg/tAg																																																																														
RB1	0	MSKCC	GRCh37	13	48916843	48916843	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	54	540	0	ENST00000267163.4:c.373G>T	p.Glu125Ter	p.E125*	ENST00000267163	NM_000321.2	125	Gaa/Taa																																																																														
RBM10	0	MSKCC	GRCh37	X	47038831	47038831	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	478	971	1	ENST00000329236.7:c.607G>T	p.Gly203Ter	p.G203*	ENST00000329236	NM_001204466.1	203	Gga/Tga																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480396	89480396	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	26	382	0	ENST00000336596.2:c.2233C>T	p.Arg745Ter	p.R745*	ENST00000336596	NM_005233.5	745	Cga/Tga																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098419	11098419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	60	683	0	ENST00000344626.4:c.937C>T	p.Pro313Ser	p.P313S	ENST00000344626	NM_003072.3	313	Ccc/Tcc																																																																														
AMER1	0	MSKCC	GRCh37	X	63410310	63410310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	255	911	1	ENST00000330258.3:c.2857C>T	p.Pro953Ser	p.P953S	ENST00000330258	NM_152424.3	953	Cca/Tca																																																																														
NTRK1	0	MSKCC	GRCh37	1	156834145	156834145	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	231	895	1	ENST00000524377.1:c.213-1G>T		p.X71_splice	ENST00000524377	NM_002529.3	71																																																																															
DDR2	0	MSKCC	GRCh37	1	162725507	162725507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	348	710	0	ENST00000367921.3:c.619G>A	p.Gly207Ser	p.G207S	ENST00000367921	NM_006182.2	207	Ggt/Agt																																																																														
CBL	0	MSKCC	GRCh37	11	119148875	119148876	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	185	323	0	ENST00000264033.4:c.1096-1_1096delinsTT		p.X366_splice	ENST00000264033	NM_005188.3	366																																																																															
POLE	0	MSKCC	GRCh37	12	133250160	133250161	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	109	616	1	ENST00000320574.5:c.1359_1359+1delinsTT		p.X453_splice	ENST00000320574	NM_006231.2	453																																																																															
FLT3	0	MSKCC	GRCh37	13	28626681	28626681	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	65	503	0	ENST00000241453.7:c.614+1G>T		p.X205_splice	ENST00000241453	NM_004119.2	205																																																																															
IRS2	0	MSKCC	GRCh37	13	110436248	110436248	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	199	419	0	ENST00000375856.3:c.2153G>C	p.Arg718Thr	p.R718T	ENST00000375856	NM_003749.2	718	aGg/aCg																																																																														
TSHR	0	MSKCC	GRCh37	14	81422175	81422175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	39	603	1	ENST00000298171.2:c.151C>T	p.Pro51Ser	p.P51S	ENST00000298171	NM_000369.2	51	Ccg/Tcg																																																																														
MGA	0	MSKCC	GRCh37	15	41989067	41989067	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	110	708	0	ENST00000219905.7:c.1859T>A	p.Leu620Ter	p.L620*	ENST00000219905	NM_001164273.1	620	tTg/tAg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857306	9857306	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	83	622	1	ENST00000330684.3:c.4095C>A	p.Asn1365Lys	p.N1365K	ENST00000330684	NM_001134407.1	1365	aaC/aaA																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732954	74732954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	61	444	0	ENST00000359995.5:c.289G>T	p.Asp97Tyr	p.D97Y	ENST00000359995	NM_001195427.1	97	Gac/Tac																																																																														
RPTOR	0	MSKCC	GRCh37	17	78921077	78921078	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	56	915	0	ENST00000306801.3:c.3191_3192insT	p.Arg1066SerfsTer36	p.R1066Sfs*36	ENST00000306801	NM_020761.2	1064	aac/aaTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291775	15291775	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	83	904	0	ENST00000263388.2:c.2991C>A	p.Cys997Ter	p.C997*	ENST00000263388	NM_000435.2	997	tgC/tgA																																																																														
JAK3	0	MSKCC	GRCh37	19	17954643	17954643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	141	1034	2	ENST00000458235.1:c.251C>T	p.Pro84Leu	p.P84L	ENST00000458235	NM_000215.3	84	cCg/cTg																																																																														
CIC	0	MSKCC	GRCh37	19	42795736	42795744	+	inframe_deletion	In_Frame_Del	DEL	CCGCCCCCG	CCGCCCCCG	-			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	89	1057	0	ENST00000575354.2:c.2725_2733del	p.Pro909_Pro911del	p.P909_P911del	ENST00000575354	NM_015125.3	909	CCGCCCCCG/-																																																																														
ATR	0	MSKCC	GRCh37	3	142243041	142243042	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	52	378	0	ENST00000350721.4:c.3946-1_3946delinsTT		p.X1316_splice	ENST00000350721	NM_001184.3	1316																																																																															
INPP4B	0	MSKCC	GRCh37	4	143003320	143003320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	71	714	1	ENST00000262992.4:c.2506G>C	p.Gly836Arg	p.G836R	ENST00000262992	NM_001101669.1	836	Ggt/Cgt																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149495352	149495352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	283	813	0	ENST00000261799.4:c.3295G>A	p.Ala1099Thr	p.A1099T	ENST00000261799	NM_002609.3	1099	Gcg/Acg																																																																														
HGF	0	MSKCC	GRCh37	7	81355311	81355311	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	48	424	0	ENST00000222390.5:c.1063C>G	p.Arg355Gly	p.R355G	ENST00000222390	NM_000601.4	355	Cga/Gga																																																																														
BCOR	0	MSKCC	GRCh37	X	39913545	39913545	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	65	828	2	ENST00000378444.4:c.4783A>T	p.Ser1595Cys	p.S1595C	ENST00000378444	NM_001123385.1	1595	Agt/Tgt																																																																														
RBM10	0	MSKCC	GRCh37	X	47006880	47006880	+	5_prime_UTR_variant	5'UTR	SNP	C	C	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1256	93	983	1	ENST00000329236.7:c.-1C>A		p.*1*	ENST00000329236	NM_001204466.1																																																																																
AMER1	0	MSKCC	GRCh37	X	63410728	63410728	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	80	866	0	ENST00000330258.3:c.2439T>A	p.Asp813Glu	p.D813E	ENST00000330258	NM_152424.3	813	gaT/gaA																																																																														
MED12	0	MSKCC	GRCh37	X	70345950	70345951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	109	790	0	ENST00000374080.3:c.2490dup	p.Ala831CysfsTer2	p.A831Cfs*2	ENST00000374080		829	-/T																																																																														
MED12	0	MSKCC	GRCh37	X	70349973	70349973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	122	831	0	ENST00000374080.3:c.3956G>T	p.Arg1319Leu	p.R1319L	ENST00000374080		1319	cGc/cTc																																																																														
STAG2	0	MSKCC	GRCh37	X	123202423	123202423	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	44	630	0	ENST00000218089.9:c.2275C>A	p.Leu759Met	p.L759M	ENST00000218089	NM_001042749.1	759	Ctg/Atg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	196	753	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	206	593	0				ENST00000310581	NM_198253.2																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0024194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	70	469	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0024197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	238	926	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
EGFR	0	MSKCC	GRCh37	7	55242468	55242486	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAAGCAACATCT	ATTAAGAGAAGCAACATCT	GCAA			P-0024197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	1834	644	2	ENST00000275493.2:c.2238_2256delATTAAGAGAAGCAACATCTinsGCAA	p.Leu747_Ser752delinsGln	p.L747_S752delinsQ	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACATCT/gaGCAA																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2489230	2489230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	130	944	3	ENST00000355716.4:c.135C>A	p.Asp45Glu	p.D45E	ENST00000355716	NM_003820.2	45	gaC/gaA																																																																														
ETV6	0	MSKCC	GRCh37	12	12022750	12022750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	54	646	0	ENST00000396373.4:c.856G>T	p.Asp286Tyr	p.D286Y	ENST00000396373	NM_001987.4	286	Gat/Tat																																																																														
MSH6	0	MSKCC	GRCh37	2	48018075	48018075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	91	743	0	ENST00000234420.5:c.270C>G	p.Phe90Leu	p.F90L	ENST00000234420	NM_000179.2	90	ttC/ttG																																																																														
ARID1B	0	MSKCC	GRCh37	6	157519964	157519964	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	209	857	3	ENST00000346085.5:c.4033C>T	p.Gln1345Ter	p.Q1345*	ENST00000346085	NM_020732.3	1345	Cag/Tag																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373255	118373255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	24	628	0	ENST00000534358.1:c.6648G>A	p.Met2216Ile	p.M2216I	ENST00000534358	NM_005933.3	2216	atG/atA																																																																														
H3F3C	0	MSKCC	GRCh37	12	31945066	31945066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	36	929	0	ENST00000340398.3:c.35C>T	p.Thr12Ile	p.T12I	ENST00000340398	NM_001013699.2	12	aCc/aTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	62	966	0	ENST00000269305.4:c.638G>C	p.Arg213Pro	p.R213P	ENST00000269305	NM_001126112.2	213	cGa/cCa																																																																														
CDC73	0	MSKCC	GRCh37	1	193181563	193181564	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0024199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	23	733	0	ENST00000367435.3:c.1111_1112del	p.Leu371AsnfsTer5	p.L371Nfs*5	ENST00000367435	NM_024529.4	370	tcTTta/tcta																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610298	10610298	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	40	1286	1	ENST00000171111.5:c.412G>A	p.Glu138Lys	p.E138K	ENST00000171111	NM_203500.1	138	Gaa/Aaa																																																																														
MSH2	0	MSKCC	GRCh37	2	47637261	47637261	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	46	774	0	ENST00000233146.2:c.395A>T	p.Glu132Val	p.E132V	ENST00000233146	NM_000251.2	132	gAa/gTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	197	935	2	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0024201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	67	465	4	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	167	669	1	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175282	112175282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	57	337	0	ENST00000257430.4:c.3991A>T	p.Arg1331Ter	p.R1331*	ENST00000257430	NM_000038.5	1331	Aga/Tga																																																																														
BRAF	0	MSKCC	GRCh37	7	140494163	140494163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	272	961	0	ENST00000288602.6:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000288602	NM_004333.4	362	cGa/cAa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	805	1045	0	ENST00000171111.5:c.959G>T	p.Arg320Leu	p.R320L	ENST00000171111	NM_203500.1	320	cGg/cTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	242	235	2	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974792	21974792	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs141798398		P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	242	235	2	ENST00000304494.5:c.35C>A	p.Ser12Ter	p.S12*	ENST00000304494	NM_000077.4	12	tCg/tAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	676	866	0	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023741	27023741	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	398	683	1	ENST00000324856.7:c.848del	p.Gly283AlafsTer80	p.G283Afs*80	ENST00000324856	NM_006015.4	283	Ggc/gc																																																																														
SESN2	0	MSKCC	GRCh37	1	28599185	28599185	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	624	1173	2	ENST00000253063.3:c.631G>T	p.Val211Leu	p.V211L	ENST00000253063	NM_031459.4	211	Gtg/Ttg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120464883	120464883	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	199	569	0	ENST00000256646.2:c.5189T>A	p.Val1730Glu	p.V1730E	ENST00000256646	NM_024408.3	1730	gTg/gAg																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50479225	50479225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	204	767	2	ENST00000394963.4:c.73G>A	p.Ala25Thr	p.A25T	ENST00000394963	NM_003076.4	25	Gct/Act																																																																														
CDK8	0	MSKCC	GRCh37	13	26959403	26959403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	404	755	0	ENST00000381527.3:c.570G>C	p.Leu190Phe	p.L190F	ENST00000381527	NM_001260.1	190	ttG/ttC																																																																														
ERCC4	0	MSKCC	GRCh37	16	14014044	14014044	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	210	641	1	ENST00000311895.7:c.22C>T	p.Arg8Ter	p.R8*	ENST00000311895	NM_005236.2	8	Cga/Tga																																																																														
SPOP	0	MSKCC	GRCh37	17	47677825	47677825	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	222	671	0	ENST00000347630.2:c.1040A>T	p.His347Leu	p.H347L	ENST00000347630	NM_001007230.1	347	cAc/cTc																																																																														
TCF3	0	MSKCC	GRCh37	19	1646372	1646372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	916	1126	2	ENST00000344749.5:c.127G>T	p.Ala43Ser	p.A43S	ENST00000344749	NM_001136139.2	43	Gcg/Tcg																																																																														
EPAS1	0	MSKCC	GRCh37	2	46597045	46597045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	192	758	2	ENST00000263734.3:c.859G>A	p.Glu287Lys	p.E287K	ENST00000263734	NM_001430.4	287	Gag/Aag																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526279	31526279	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	625	1179	0	ENST00000344624.3:c.761G>C	p.Arg254Pro	p.R254P	ENST00000344624		254	cGc/cCc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149503852	149503852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	417	873	0	ENST00000261799.4:c.1984C>A	p.Leu662Met	p.L662M	ENST00000261799	NM_002609.3	662	Ctg/Atg																																																																														
PARK2	0	MSKCC	GRCh37	6	162683719	162683719	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	456	903	1	ENST00000366898.1:c.250G>T	p.Gly84Ter	p.G84*	ENST00000366898	NM_004562.2	84	Gga/Tga																																																																														
KMT2C	0	MSKCC	GRCh37	7	152132748	152132748	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	204	703	0	ENST00000262189.6:c.124A>T	p.Lys42Ter	p.K42*	ENST00000262189	NM_170606.2	42	Aaa/Taa																																																																														
KMT2C	0	MSKCC	GRCh37	7	152132788	152132788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	238	922	0	ENST00000262189.6:c.84C>G	p.Ser28Arg	p.S28R	ENST00000262189	NM_170606.2	28	agC/agG																																																																														
PREX2	0	MSKCC	GRCh37	8	68989639	68989639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024203-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	201	689	0	ENST00000288368.4:c.1577G>T	p.Cys526Phe	p.C526F	ENST00000288368	NM_024870.2	526	tGc/tTc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	126	852	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15284985	15284985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	67	880	4	ENST00000263388.2:c.4630C>T	p.Arg1544Cys	p.R1544C	ENST00000263388	NM_000435.2	1544	Cgc/Tgc																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88649942	88649942	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	95	777	0	ENST00000372037.3:c.191C>G	p.Ser64Ter	p.S64*	ENST00000372037	NM_004329.2	64	tCa/tGa																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88651978	88651978	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	90	417	0	ENST00000372037.3:c.325C>G	p.Gln109Glu	p.Q109E	ENST00000372037	NM_004329.2	109	Cag/Gag																																																																														
MEN1	0	MSKCC	GRCh37	11	64572020	64572020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	61	911	0	ENST00000337652.1:c.1634C>T	p.Pro545Leu	p.P545L	ENST00000337652	NM_130803.2	545	cCc/cTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434271	49434271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	76	1248	0	ENST00000301067.7:c.7282del	p.Arg2428GlyfsTer57	p.R2428Gfs*57	ENST00000301067	NM_003482.3	2428	Cgg/gg																																																																														
MGA	0	MSKCC	GRCh37	15	42026780	42026780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	44	473	0	ENST00000219905.7:c.3904G>C	p.Asp1302His	p.D1302H	ENST00000219905	NM_001164273.1	1302	Gat/Cat																																																																														
NTHL1	0	MSKCC	GRCh37	16	2094750	2094750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	87	981	0	ENST00000219066.1:c.430G>C	p.Asp144His	p.D144H	ENST00000219066	NM_002528.5	144	Gac/Cac																																																																														
AXIN2	0	MSKCC	GRCh37	17	63545662	63545662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	54	699	0	ENST00000307078.5:c.932C>A	p.Ser311Tyr	p.S311Y	ENST00000307078	NM_004655.3	311	tCc/tAc																																																																														
JAK3	0	MSKCC	GRCh37	19	17937605	17937605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	64	991	0	ENST00000458235.1:c.3322C>G	p.His1108Asp	p.H1108D	ENST00000458235	NM_000215.3	1108	Cat/Gat																																																																														
BBC3	0	MSKCC	GRCh37	19	47730006	47730006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	44	590	0	ENST00000449228.1:c.383C>T	p.Ser128Leu	p.S128L	ENST00000449228	NM_001127240.2	128	tCa/tTa																																																																														
SOS1	0	MSKCC	GRCh37	2	39283950	39283950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	68	672	0	ENST00000402219.2:c.403G>C	p.Glu135Gln	p.E135Q	ENST00000402219	NM_005633.3	135	Gaa/Caa																																																																														
XPO1	0	MSKCC	GRCh37	2	61710143	61710143	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	51	629	0	ENST00000401558.2:c.2761G>C	p.Asp921His	p.D921H	ENST00000401558	NM_003400.3	921	Gat/Cat																																																																														
XPO1	0	MSKCC	GRCh37	2	61710168	61710168	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	52	627	1	ENST00000401558.2:c.2736G>C	p.Gln912His	p.Q912H	ENST00000401558	NM_003400.3	912	caG/caC																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55144072	55144072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	56	620	0	ENST00000257290.5:c.1901G>A	p.Arg634Lys	p.R634K	ENST00000257290	NM_006206.4	634	aGa/aAa																																																																														
PREX2	0	MSKCC	GRCh37	8	68995543	68995543	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	93	862	0	ENST00000288368.4:c.1947C>G	p.Phe649Leu	p.F649L	ENST00000288368	NM_024870.2	649	ttC/ttG																																																																														
CYLD	0	MSKCC	GRCh37	16	50821726	50821729	+	missense_variant	Missense_Mutation	ONP	CATC	CATC	TATT			P-0024206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	79	645	0	ENST00000398568.2:c.2062_2065delinsTATT	p.His688_His689delinsTyrTyr	p.H688_H689delinsYY	ENST00000398568	NM_001042412.1	688	CATCat/TATTat																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024213-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	111	750	3	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	53	455	0	ENST00000371953.3:c.176C>G	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tGa																																																																														
RASA1	0	MSKCC	GRCh37	5	86674233	86674233	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	71	451	0	ENST00000274376.6:c.2365C>T	p.Arg789Ter	p.R789*	ENST00000274376	NM_002890.2	789	Cga/Tga																																																																														
ETV6	0	MSKCC	GRCh37	12	12037480	12037480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	70	413	0	ENST00000396373.4:c.1111G>C	p.Val371Leu	p.V371L	ENST00000396373	NM_001987.4	371	Gtg/Ctg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49441780	49441780	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	146	606	0	ENST00000301067.7:c.4204C>T	p.Gln1402Ter	p.Q1402*	ENST00000301067	NM_003482.3	1402	Cag/Tag																																																																														
RB1	0	MSKCC	GRCh37	13	48919215	48919215	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	28	212	0	ENST00000267163.4:c.381-1G>T		p.X127_splice	ENST00000267163	NM_000321.2	127																																																																															
TP53BP1	0	MSKCC	GRCh37	15	43733737	43733737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	30	596	0	ENST00000382044.4:c.3085G>C	p.Glu1029Gln	p.E1029Q	ENST00000382044	NM_001141980.1	1029	Gag/Cag																																																																														
SUZ12	0	MSKCC	GRCh37	17	30320350	30320350	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	56	391	0	ENST00000322652.5:c.1291C>T	p.Gln431Ter	p.Q431*	ENST00000322652	NM_015355.2	431	Cag/Tag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211381	36211381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	81	818	0	ENST00000222270.7:c.1132G>A	p.Gly378Arg	p.G378R	ENST00000222270	NM_014727.1	378	Gga/Aga																																																																														
TP63	0	MSKCC	GRCh37	3	189587167	189587167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	74	591	0	ENST00000264731.3:c.1184C>G	p.Ser395Cys	p.S395C	ENST00000264731	NM_003722.4	395	tCc/tGc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70978658	70978658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	153	892	3	ENST00000276594.2:c.995G>A	p.Arg332His	p.R332H	ENST00000276594	NM_024504.3	332	cGc/cAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8338966	8338966	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	58	630	0	ENST00000356435.5:c.5335A>T	p.Met1779Leu	p.M1779L	ENST00000356435		1779	Atg/Ttg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139405632	139405632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	69	1016	0	ENST00000277541.6:c.2559C>G	p.Phe853Leu	p.F853L	ENST00000277541	NM_017617.3	853	ttC/ttG																																																																														
STAG2	0	MSKCC	GRCh37	X	123200039	123200039	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024216-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	28	206	0	ENST00000218089.9:c.2111C>G	p.Ser704Ter	p.S704*	ENST00000218089	NM_001042749.1	704	tCa/tGa																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177584	56177584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	84	470	2	ENST00000399503.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000399503	NM_005921.1	853	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	94	814	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	21	271	5	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636794	8636794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	132	678	0	ENST00000356435.5:c.115G>A	p.Gly39Arg	p.G39R	ENST00000356435		39	Gga/Aga																																																																														
CIC	0	MSKCC	GRCh37	19	42791757	42791757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	19	782	0	ENST00000575354.2:c.643C>T	p.Arg215Trp	p.R215W	ENST00000575354	NM_015125.3	215	Cgg/Tgg																																																																														
IDH1	0	MSKCC	GRCh37	2	209116263	209116263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	20	421	0	ENST00000345146.2:c.13delA	p.Ile5SerfsTer7	p.I5Sfs*7	ENST00000345146	NM_005896.2	5	Atc/tc																																																																														
POLD1	0	MSKCC	GRCh37	19	50905873	50905873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	46	797	1	ENST00000440232.2:c.845C>T	p.Thr282Met	p.T282M	ENST00000440232	NM_002691.3	282	aCg/aTg																																																																														
WT1	0	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	68	630	0	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458147	120458147	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	56	691	1	ENST00000256646.2:c.7198C>T	p.Arg2400Ter	p.R2400*	ENST00000256646	NM_024408.3	2400	Cga/Tga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925441	114925441	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138649767		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	47	676	3	ENST00000543371.1:c.1519G>A	p.Ala507Thr	p.A507T	ENST00000543371	NM_001198531.1	507	Gcc/Acc																																																																														
BBC3	0	MSKCC	GRCh37	19	47725019	47725019	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	37	924	2	ENST00000449228.1:c.725del	p.Gly242AlafsTer48	p.G242Afs*48	ENST00000449228	NM_001127240.2	242	gGc/gc																																																																														
UPF1	0	MSKCC	GRCh37	19	18965779	18965779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	46	902	2	ENST00000262803.5:c.1357G>A	p.Val453Ile	p.V453I	ENST00000262803	NM_002911.3	453	Gta/Ata																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830807	72830807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	83	733	1	ENST00000268489.5:c.5774del	p.Gly1925ValfsTer72	p.G1925Vfs*72	ENST00000268489	NM_006885.3	1925	gGt/gt																																																																														
DAXX	0	MSKCC	GRCh37	6	33288965	33288965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	88	501	0	ENST00000374542.5:c.587C>T	p.Ala196Val	p.A196V	ENST00000374542	NM_001141970.1	196	gCg/gTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446160	49446160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	29	838	0	ENST00000301067.7:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000301067	NM_003482.3	436	Gag/Aag																																																																														
TRAF7	0	MSKCC	GRCh37	16	2222293	2222293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	65	856	5	ENST00000326181.6:c.577C>T	p.Arg193Trp	p.R193W	ENST00000326181	NM_032271.2	193	Cgg/Tgg																																																																														
MTOR	0	MSKCC	GRCh37	1	11291110	11291110	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	45	648	0	ENST00000361445.4:c.2651C>T	p.Ala884Val	p.A884V	ENST00000361445	NM_004958.3	884	gCc/gTc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78428598	78428598	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	44	587	3	ENST00000370768.2:c.1201del	p.Ser401AlafsTer2	p.S401Afs*2	ENST00000370768	NM_003902.3	401	Agc/gc																																																																														
RET	0	MSKCC	GRCh37	10	43608364	43608364	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	91	914	1	ENST00000355710.3:c.1712A>T	p.Asp571Val	p.D571V	ENST00000355710	NM_020975.4	571	gAt/gTt																																																																														
TSC2	0	MSKCC	GRCh37	16	2134521	2134521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	96	849	1	ENST00000219476.3:c.4298C>T	p.Ser1433Leu	p.S1433L	ENST00000219476	NM_000548.3	1433	tCg/tTg																																																																														
SLX4	0	MSKCC	GRCh37	16	3639839	3639839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	59	779	2	ENST00000294008.3:c.3800G>A	p.Arg1267His	p.R1267H	ENST00000294008	NM_032444.2	1267	cGt/cAt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781860	3781860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	86	962	0	ENST00000262367.5:c.4807G>A	p.Ala1603Thr	p.A1603T	ENST00000262367	NM_004380.2	1603	Gcc/Acc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3808001	3808001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	52	656	1	ENST00000262367.5:c.3418C>T	p.Arg1140Trp	p.R1140W	ENST00000262367	NM_004380.2	1140	Cgg/Tgg																																																																														
STAT3	0	MSKCC	GRCh37	17	40485713	40485713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	86	647	3	ENST00000264657.5:c.1027G>A	p.Val343Ile	p.V343I	ENST00000264657	NM_139276.2	343	Gtc/Atc																																																																														
STAT3	0	MSKCC	GRCh37	17	40497608	40497608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	107	880	2	ENST00000264657.5:c.341G>A	p.Arg114His	p.R114H	ENST00000264657	NM_139276.2	114	cGc/cAc																																																																														
AXIN2	0	MSKCC	GRCh37	17	63554621	63554621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	23	689	0	ENST00000307078.5:c.118G>C	p.Val40Leu	p.V40L	ENST00000307078	NM_004655.3	40	Gtg/Ctg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5220134	5220134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115469963		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	32	624	2	ENST00000357368.4:c.3581G>A	p.Arg1194His	p.R1194H	ENST00000357368	NM_002850.3	1194	cGc/cAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11172483	11172483	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	92	783	0	ENST00000344626.4:c.4935A>C	p.Glu1645Asp	p.E1645D	ENST00000344626	NM_003072.3	1645	gaA/gaC																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210791	36210791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	41	969	3	ENST00000222270.7:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000222270	NM_014727.1	181	cGg/cAg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212401	36212401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	79	876	2	ENST00000222270.7:c.2152G>A	p.Glu718Lys	p.E718K	ENST00000222270	NM_014727.1	718	Gag/Aag																																																																														
EPAS1	0	MSKCC	GRCh37	2	46607469	46607469	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201311893		P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	114	921	2	ENST00000263734.3:c.1658C>T	p.Ala553Val	p.A553V	ENST00000263734	NM_001430.4	553	gCg/gTg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023600	31023600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	28	673	0	ENST00000375687.4:c.3085G>A	p.Val1029Met	p.V1029M	ENST00000375687	NM_015338.5	1029	Gtg/Atg																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41747831	41747831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	48	427	0	ENST00000226382.2:c.938T>C	p.Met313Thr	p.M313T	ENST00000226382	NM_003924.3	313	aTg/aCg																																																																														
RAD50	0	MSKCC	GRCh37	5	131972843	131972843	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	48	469	0	ENST00000265335.6:c.3426A>T	p.Glu1142Asp	p.E1142D	ENST00000265335		1142	gaA/gaT																																																																														
CSF1R	0	MSKCC	GRCh37	5	149433981	149433981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	46	911	3	ENST00000286301.3:c.2667G>A	p.Met889Ile	p.M889I	ENST00000286301	NM_005211.3	889	atG/atA																																																																														
PARK2	0	MSKCC	GRCh37	6	162683650	162683650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	81	630	0	ENST00000366898.1:c.319C>A	p.Leu107Ile	p.L107I	ENST00000366898	NM_004562.2	107	Ctc/Atc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151884448	151884448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	79	467	0	ENST00000262189.6:c.4907C>T	p.Thr1636Met	p.T1636M	ENST00000262189	NM_170606.2	1636	aCg/aTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151900065	151900065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	86	617	0	ENST00000262189.6:c.4046G>A	p.Arg1349Gln	p.R1349Q	ENST00000262189	NM_170606.2	1349	cGa/cAa																																																																														
RBM10	0	MSKCC	GRCh37	X	47030503	47030503	+	intron_variant	Intron	SNP	C	C	T			P-0024219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	75	471	1	ENST00000329236.7:c.201+1606C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	145	997	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																																																														
DNMT1	0	MSKCC	GRCh37	19	10247784	10247784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024220-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	133	1036	1	ENST00000340748.4:c.4418G>A	p.Arg1473His	p.R1473H	ENST00000340748		1473	cGt/cAt																																																																														
NF1	0	MSKCC	GRCh37	17	29560085	29560085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	113	351	0	ENST00000358273.4:c.3562C>T	p.Gln1188Ter	p.Q1188*	ENST00000358273	NM_001042492.2	1188	Caa/Taa																																																																														
CYLD	0	MSKCC	GRCh37	16	50811826	50811826	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	142	677	0	ENST00000398568.2:c.1103C>A	p.Ser368Ter	p.S368*	ENST00000398568	NM_001042412.1	368	tCa/tAa																																																																														
NF1	0	MSKCC	GRCh37	17	29664535	29664536	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0024287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	177	600	0	ENST00000358273.4:c.6585_6586delGA	p.Glu2195AspfsTer46	p.E2195Dfs*46	ENST00000358273	NM_001042492.2	2193	GAg/g																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31375177	31375177	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs7354578		P-0024287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	162	762	0	ENST00000328111.2:c.574G>T	p.Ala192Ser	p.A192S	ENST00000328111	NM_006892.3	192	Gcc/Tcc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	54	431	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	85	699	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
ATM	0	MSKCC	GRCh37	11	108106492	108106492	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	27	332	0	ENST00000278616.4:c.427A>G	p.Asn143Asp	p.N143D	ENST00000278616	NM_000051.3	143	Aac/Gac																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612975	228612975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	47	366	0	ENST00000366696.1:c.52C>A	p.Arg18Ser	p.R18S	ENST00000366696	NM_003493.2	18	Cgc/Agc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105565	27105565	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	52	578	0	ENST00000324856.7:c.5176G>T	p.Glu1726Ter	p.E1726*	ENST00000324856	NM_006015.4	1726	Gag/Tag																																																																														
RET	0	MSKCC	GRCh37	10	43609051	43609051	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	43	578	0	ENST00000355710.3:c.1807A>T	p.Lys603Ter	p.K603*	ENST00000355710	NM_020975.4	603	Aaa/Taa																																																																														
FGF19	0	MSKCC	GRCh37	11	69514115	69514115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	59	671	1	ENST00000294312.3:c.566C>T	p.Ser189Phe	p.S189F	ENST00000294312	NM_005117.2	189	tCt/tTt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376847	118376847	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	43	341	0	ENST00000534358.1:c.10240A>T	p.Thr3414Ser	p.T3414S	ENST00000534358	NM_005933.3	3414	Aca/Tca																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871757	12871757	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	35	220	1	ENST00000228872.4:c.476-2A>T		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																															
POLE	0	MSKCC	GRCh37	12	133214642	133214642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145621558		P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	101	484	1	ENST00000320574.5:c.5636G>A	p.Arg1879His	p.R1879H	ENST00000320574	NM_006231.2	1879	cGt/cAt																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281048	49281048	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	36	714	0	ENST00000282018.3:c.95C>G	p.Thr32Arg	p.T32R	ENST00000282018	NM_020377.2	32	aCa/aGa																																																																														
MAX	0	MSKCC	GRCh37	14	65568292	65568292	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	29	180	0	ENST00000358664.4:c.37-2A>T		p.X13_splice	ENST00000358664	NM_002382.4	13																																																																															
NTRK3	0	MSKCC	GRCh37	15	88472474	88472474	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	62	625	0	ENST00000360948.2:c.2081A>T	p.Lys694Met	p.K694M	ENST00000360948	NM_001012338.2	694	aAg/aTg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88476354	88476354	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	78	649	0	ENST00000360948.2:c.1778C>G	p.Thr593Ser	p.T593S	ENST00000360948	NM_001012338.2	593	aCc/aGc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857140	9857140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	29	385	0	ENST00000330684.3:c.4261G>A	p.Asp1421Asn	p.D1421N	ENST00000330684	NM_001134407.1	1421	Gat/Aat																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857358	9857358	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	46	426	0	ENST00000330684.3:c.4043T>A	p.Leu1348Gln	p.L1348Q	ENST00000330684	NM_001134407.1	1348	cTg/cAg																																																																														
CTCF	0	MSKCC	GRCh37	16	67660575	67660575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	61	644	0	ENST00000264010.4:c.1475A>G	p.Glu492Gly	p.E492G	ENST00000264010	NM_006565.3	492	gAg/gGg																																																																														
CDH1	0	MSKCC	GRCh37	16	68855902	68855902	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	23	359	0	ENST00000261769.5:c.1712-2A>G		p.X571_splice	ENST00000261769	NM_004360.3	571																																																																															
TP53	0	MSKCC	GRCh37	17	7573966	7573966	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	66	650	1	ENST00000269305.4:c.1061A>T	p.Gln354Leu	p.Q354L	ENST00000269305	NM_001126112.2	354	cAg/cTg																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805639	46805639	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	67	712	0	ENST00000290295.7:c.317T>G	p.Leu106Arg	p.L106R	ENST00000290295	NM_006361.5	106	cTg/cGg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602560	10602560	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	66	659	0	ENST00000171111.5:c.1018A>T	p.Ser340Cys	p.S340C	ENST00000171111	NM_203500.1	340	Agc/Tgc																																																																														
MST1R	0	MSKCC	GRCh37	3	49933459	49933459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	99	708	0	ENST00000296474.3:c.2731G>A	p.Gly911Arg	p.G911R	ENST00000296474	NM_002447.2	911	Ggg/Agg																																																																														
PRKCI	0	MSKCC	GRCh37	3	170013714	170013714	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	80	555	0	ENST00000295797.4:c.1433A>C	p.Gln478Pro	p.Q478P	ENST00000295797	NM_002740.5	478	cAa/cCa																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185161267	185161267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	124	665	0	ENST00000265026.3:c.694A>G	p.Ile232Val	p.I232V	ENST00000265026	NM_004721.4	232	Atc/Gtc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55144657	55144657	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	28	381	0	ENST00000257290.5:c.2131A>G	p.Asn711Asp	p.N711D	ENST00000257290	NM_006206.4	711	Aac/Gac																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55146542	55146542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	37	424	0	ENST00000257290.5:c.2216C>A	p.Thr739Asn	p.T739N	ENST00000257290	NM_006206.4	739	aCt/aAt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66218794	66218794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	31	459	0	ENST00000273854.3:c.2264A>G	p.Tyr755Cys	p.Y755C	ENST00000273854	NM_004439.5	755	tAt/tGt																																																																														
TET2	0	MSKCC	GRCh37	4	106197269	106197269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	32	281	0	ENST00000380013.4:c.5602C>A	p.His1868Asn	p.H1868N	ENST00000380013	NM_001127208.2	1868	Cat/Aat																																																																														
MSH3	0	MSKCC	GRCh37	5	79966066	79966066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	68	621	0	ENST00000265081.6:c.730A>G	p.Lys244Glu	p.K244E	ENST00000265081	NM_002439.4	244	Aaa/Gaa																																																																														
MDC1	0	MSKCC	GRCh37	6	30681904	30681904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	64	496	0	ENST00000376406.3:c.193G>T	p.Ala65Ser	p.A65S	ENST00000376406	NM_014641.2	65	Gcc/Tcc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32168942	32168942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	74	900	2	ENST00000375023.3:c.4091C>A	p.Ala1364Asp	p.A1364D	ENST00000375023	NM_004557.3	1364	gCc/gAc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32171618	32171618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	73	741	0	ENST00000375023.3:c.3160C>A	p.Pro1054Thr	p.P1054T	ENST00000375023	NM_004557.3	1054	Ccc/Acc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93965572	93965572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	34	465	0	ENST00000369303.4:c.2356G>T	p.Asp786Tyr	p.D786Y	ENST00000369303	NM_004440.3	786	Gat/Tat																																																																														
ROS1	0	MSKCC	GRCh37	6	117679015	117679015	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	42	584	0	ENST00000368508.3:c.3806A>C	p.His1269Pro	p.H1269P	ENST00000368508	NM_002944.2	1269	cAc/cCc																																																																														
MET	0	MSKCC	GRCh37	7	116418967	116418967	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	51	350	0	ENST00000397752.3:c.3478A>T	p.Met1160Leu	p.M1160L	ENST00000397752	NM_000245.2	1160	Atg/Ttg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151855974	151855974	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	54	575	0	ENST00000262189.6:c.11644A>G	p.Thr3882Ala	p.T3882A	ENST00000262189	NM_170606.2	3882	Act/Gct																																																																														
PRDM14	0	MSKCC	GRCh37	8	70967578	70967578	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	113	661	2	ENST00000276594.2:c.1445T>C	p.Val482Ala	p.V482A	ENST00000276594	NM_024504.3	482	gTc/gCc																																																																														
PAX5	0	MSKCC	GRCh37	9	37015037	37015037	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	81	507	0	ENST00000358127.4:c.367del	p.Val123CysfsTer36	p.V123Cfs*36	ENST00000358127	NM_001280556.1	123	Gtg/tg																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128268624	128268624	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	96	701	0	ENST00000265960.3:c.1031A>G	p.Gln344Arg	p.Q344R	ENST00000265960	NM_001006617.1	344	cAg/cGg																																																																														
TSC1	0	MSKCC	GRCh37	9	135796771	135796771	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	53	320	0	ENST00000298552.3:c.716A>T	p.Asp239Val	p.D239V	ENST00000298552	NM_001162426.1	239	gAc/gTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390651	139390651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	107	771	0	ENST00000277541.6:c.7540C>G	p.Pro2514Ala	p.P2514A	ENST00000277541	NM_017617.3	2514	Cct/Gct																																																																														
BCOR	0	MSKCC	GRCh37	X	39923198	39923198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	52	247	0	ENST00000378444.4:c.3510G>A	p.Trp1170Ter	p.W1170*	ENST00000378444	NM_001123385.1	1170	tgG/tgA																																																																														
ATRX	0	MSKCC	GRCh37	X	76937398	76937398	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	58	255	0	ENST00000373344.5:c.3350T>A	p.Met1117Lys	p.M1117K	ENST00000373344	NM_000489.3	1117	aTg/aAg																																																																														
BTK	0	MSKCC	GRCh37	X	100611248	100611248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	54	203	0	ENST00000308731.7:c.1358C>G	p.Ser453Cys	p.S453C	ENST00000308731	NM_000061.2	453	tCc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0024296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	441	391	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25497824	25497824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	254	574	0	ENST00000264709.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000264709	NM_175629.2	209	Cgc/Tgc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482606	56482606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	406	697	1	ENST00000267101.3:c.1063A>G	p.Thr355Ala	p.T355A	ENST00000267101	NM_001982.3	355	Acc/Gcc																																																																														
SESN3	0	MSKCC	GRCh37	11	94924617	94924617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	32	613	0	ENST00000536441.1:c.293G>A	p.Arg98His	p.R98H	ENST00000536441	NM_144665.3	98	cGc/cAc																																																																														
TBX3	0	MSKCC	GRCh37	12	115118940	115118940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	125	263	0	ENST00000257566.3:c.401C>T	p.Pro134Leu	p.P134L	ENST00000257566	NM_016569.3	134	cCt/cTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	139	785	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0024345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	196	829	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
RASA1	0	MSKCC	GRCh37	5	86629094	86629094	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	68	478	0	ENST00000274376.6:c.839A>G	p.Asp280Gly	p.D280G	ENST00000274376	NM_002890.2	280	gAt/gGt																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51439784	51439784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	89	482	0	ENST00000262662.1:c.349C>T	p.Arg117Trp	p.R117W	ENST00000262662		117	Cgg/Tgg																																																																														
ERF	0	MSKCC	GRCh37	19	42752974	42752974	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024345-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	139	800	0	ENST00000222329.4:c.1290C>G	p.Ile430Met	p.I430M	ENST00000222329	NM_006494.2	430	atC/atG																																																																														
TP53	0	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	171	907	1	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	54	256	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	54	256	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	54	256	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	195	759	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468081	50468081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	139	522	0	ENST00000331340.3:c.1316G>T	p.Arg439Leu	p.R439L	ENST00000331340	NM_006060.4	439	cGc/cTc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023685	27023685	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	69	332	0	ENST00000324856.7:c.791C>A	p.Ser264Ter	p.S264*	ENST00000324856	NM_006015.4	264	tCg/tAg																																																																														
SPRED1	0	MSKCC	GRCh37	15	38591641	38591641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	236	756	0	ENST00000299084.4:c.100C>T	p.Leu34Phe	p.L34F	ENST00000299084	NM_152594.2	34	Ctt/Ttt																																																																														
ERCC4	0	MSKCC	GRCh37	16	14016026	14016026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	70	445	0	ENST00000311895.7:c.346G>T	p.Val116Phe	p.V116F	ENST00000311895	NM_005236.2	116	Gtt/Ttt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89468445	89468445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	117	523	0	ENST00000336596.2:c.1979C>A	p.Thr660Lys	p.T660K	ENST00000336596	NM_005233.5	660	aCa/aAa																																																																														
KDR	0	MSKCC	GRCh37	4	55956207	55956207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	108	814	0	ENST00000263923.4:c.3108A>T	p.Leu1036Phe	p.L1036F	ENST00000263923	NM_002253.2	1036	ttA/ttT																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106515196	106515196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	81	661	0	ENST00000359195.3:c.2339C>A	p.Pro780His	p.P780H	ENST00000359195	NM_002649.2	780	cCc/cAc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372233	55372233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	25	212	0	ENST00000297316.4:c.923G>T	p.Gly308Val	p.G308V	ENST00000297316	NM_022454.3	308	gGg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0024352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	139	1169	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	110	1014	1	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																																																														
FBXW7	0	MSKCC	GRCh37	4	153259089	153259089	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0024352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	31	431	0	ENST00000281708.4:c.727-1G>A		p.X243_splice	ENST00000281708	NM_033632.3	243																																																																															
KMT2D	0	MSKCC	GRCh37	12	49443560	49443561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	78	863	0	ENST00000301067.7:c.3810dup	p.Leu1271ThrfsTer15	p.L1271Tfs*15	ENST00000301067	NM_003482.3	1270	-/A																																																																														
NBN	0	MSKCC	GRCh37	8	90958477	90958477	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	73	925	0	ENST00000265433.3:c.1961T>C	p.Leu654Pro	p.L654P	ENST00000265433	NM_002485.4	654	cTg/cCg																																																																														
JAK2	0	MSKCC	GRCh37	9	5072540	5072540	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	29	689	1	ENST00000381652.3:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000381652	NM_004972.3	564	Cga/Tga																																																																														
RXRA	0	MSKCC	GRCh37	9	137309041	137309041	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs146295223		P-0024352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	101	1146	0	ENST00000481739.1:c.648C>A	p.Asn216Lys	p.N216K	ENST00000481739	NM_002957.4	216	aaC/aaA																																																																														
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	186	944	0	ENST00000311189.7:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000311189		61	cAg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	184	624	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	90	679	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	101	884	2	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	110	984	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8633320	8633320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	95	955	0	ENST00000356435.5:c.349C>T	p.Arg117Trp	p.R117W	ENST00000356435		117	Cgg/Tgg																																																																														
CSDE1	0	MSKCC	GRCh37	1	115266516	115266516	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	42	971	0	ENST00000438362.2:c.1999A>T	p.Ile667Phe	p.I667F	ENST00000438362	NM_001242891.1	667	Att/Ttt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781450	3781450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	48	626	0	ENST00000262367.5:c.4915G>T	p.Ala1639Ser	p.A1639S	ENST00000262367	NM_004380.2	1639	Gct/Tct																																																																														
CYLD	0	MSKCC	GRCh37	16	50828334	50828334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	21	700	0	ENST00000398568.2:c.2672G>T	p.Arg891Leu	p.R891L	ENST00000398568	NM_001042412.1	891	cGg/cTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000913-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			798	118	607	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0000913-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			581	186	514	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000913-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			360	361	654	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																																																														
CUL3	0	MSKCC	GRCh37	2	225422464	225422464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000913-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			456	33	538	0	ENST00000264414.4:c.176G>C	p.Arg59Thr	p.R59T	ENST00000264414	NM_003590.4	59	aGa/aCa																																																																														
RB1	0	MSKCC	GRCh37	13	48937034	48937035	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000913-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			261	161	370	2	ENST00000267163.4:c.806dup	p.Asn269LysfsTer2	p.N269Kfs*2	ENST00000267163	NM_000321.2	268	gaa/gAaa																																																																														
TSHR	0	MSKCC	GRCh37	14	81528560	81528560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000913-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			793	50	313	1	ENST00000298171.2:c.239G>A	p.Arg80Lys	p.R80K	ENST00000298171	NM_000369.2	80	aGa/aAa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789696	3789696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000913-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			451	175	426	0	ENST00000262367.5:c.4163C>G	p.Ser1388Cys	p.S1388C	ENST00000262367	NM_004380.2	1388	tCt/tGt																																																																														
BRD4	0	MSKCC	GRCh37	19	15376368	15376368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000913-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			870	233	928	0	ENST00000263377.2:c.646C>A	p.Pro216Thr	p.P216T	ENST00000263377	NM_058243.2	216	Cct/Act																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32187951	32187951	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000913-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			808	59	604	1	ENST00000375023.3:c.1270T>A	p.Tyr424Asn	p.Y424N	ENST00000375023	NM_004557.3	424	Tat/Aat																																																																														
ESR1	0	MSKCC	GRCh37	6	152163733	152163733	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000913-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			328	60	406	0	ENST00000206249.3:c.454C>A	p.Pro152Thr	p.P152T	ENST00000206249	NM_000125.3	152	Cca/Aca																																																																														
PMS2	0	MSKCC	GRCh37	7	6035204	6035207	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0000913-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			833	96	472	0	ENST00000265849.7:c.861_864delACAG	p.Arg287SerfsTer19	p.R287Sfs*19	ENST00000265849	NM_000535.5	287	agACAG/ag																																																																														
CDH1	0	MSKCC	GRCh37	16	68845757	68845757	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	82	415	0	ENST00000261769.5:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000261769	NM_004360.3	335	Cga/Tga																																																																														
NTRK1	0	MSKCC	GRCh37	1	156846204	156846204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	95	687	0	ENST00000524377.1:c.1645G>A	p.Ala549Thr	p.A549T	ENST00000524377	NM_002529.3	549	Gcg/Acg																																																																														
CARD11	0	MSKCC	GRCh37	7	2987418	2987421	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CCTC	CCTC	-			P-0021913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	45	682	0	ENST00000396946.4:c.8_11delGAGG	p.Gly3GlufsTer12	p.G3Efs*12	ENST00000396946	NM_032415.4	3	gGAGGa/ga																																																																														
TP63	0	MSKCC	GRCh37	3	189526287	189526287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	581	467	0	ENST00000264731.3:c.551C>T	p.Ser184Leu	p.S184L	ENST00000264731	NM_003722.4	184	tCg/tTg																																																																														
STK11	0	MSKCC	GRCh37	19	1220443	1220443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	228	786	0	ENST00000326873.7:c.536C>G	p.Pro179Arg	p.P179R	ENST00000326873	NM_000455.4	179	cCg/cGg																																																																														
ALK	0	MSKCC	GRCh37	2	29473981	29473981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	267	727	1	ENST00000389048.3:c.2194G>A	p.Asp732Asn	p.D732N	ENST00000389048	NM_004304.4	732	Gac/Aac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11130378	11130378	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0021915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	447	632	0	ENST00000344626.4:c.2616+1G>A		p.X872_splice	ENST00000344626	NM_003072.3	872																																																																															
UPF1	0	MSKCC	GRCh37	19	18943136	18943136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	27	296	0	ENST00000262803.5:c.118C>T	p.Leu40Phe	p.L40F	ENST00000262803	NM_002911.3	40	Ctt/Ttt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151841892	151841892	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	138	408	0	ENST00000262189.6:c.14249A>T	p.Tyr4750Phe	p.Y4750F	ENST00000262189	NM_170606.2	4750	tAt/tTt																																																																														
SYK	0	MSKCC	GRCh37	9	93606265	93606265	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	230	678	0	ENST00000375746.1:c.85C>G	p.Leu29Val	p.L29V	ENST00000375746	NM_001174167.1	29	Ctg/Gtg																																																																														
ATRX	0	MSKCC	GRCh37	X	76763927	76763927	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021915-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	193	319	0	ENST00000373344.5:c.7381C>T	p.Gln2461Ter	p.Q2461*	ENST00000373344	NM_000489.3	2461	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112175858	112175858	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022114-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			61	61	349	0	ENST00000257430.4:c.4567A>T	p.Arg1523Ter	p.R1523*	ENST00000257430	NM_000038.5	1523	Aga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175875	112175905	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGGAAAATGACAATGGGAATGAAACAGAA	TCAGGAAAATGACAATGGGAATGAAACAGAA	-			P-0022114-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			60	44	325	0	ENST00000257430.4:c.4588_4618del	p.Glu1530SerfsTer25	p.E1530Sfs*25	ENST00000257430	NM_000038.5	1528	gtTCAGGAAAATGACAATGGGAATGAAACAGAA/gt																																																																														
MDC1	0	MSKCC	GRCh37	6	30671946	30671946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022114-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	269	1071	3	ENST00000376406.3:c.5014C>A	p.Pro1672Thr	p.P1672T	ENST00000376406	NM_014641.2	1672	Cct/Act																																																																														
TET2	0	MSKCC	GRCh37	4	106180900	106180900	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022114-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			231	16	500	0	ENST00000380013.4:c.3928A>G	p.Lys1310Glu	p.K1310E	ENST00000380013	NM_001127208.2	1310	Aag/Gag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	90	773	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	93	558	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	91	611	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
RNF43	0	MSKCC	GRCh37	17	56440680	56440680	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	176	872	2	ENST00000407977.2:c.538C>T	p.Gln180Ter	p.Q180*	ENST00000407977		180	Caa/Taa																																																																														
RAF1	0	MSKCC	GRCh37	3	12627284	12627284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	157	568	0	ENST00000251849.4:c.1432G>A	p.Glu478Lys	p.E478K	ENST00000251849	NM_002880.3	478	Gaa/Aaa																																																																														
RNF43	0	MSKCC	GRCh37	17	56440892	56440892	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	174	847	1	ENST00000407977.2:c.445G>T	p.Glu149Ter	p.E149*	ENST00000407977		149	Gag/Tag																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30686398	30686399	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	24	427	0	ENST00000359013.4:c.330_331dup	p.Ala111GlyfsTer11	p.A111Gfs*11	ENST00000359013	NM_001024847.2	110	gtg/gtGGg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729898	30729899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	135	452	0	ENST00000359013.4:c.1497dup	p.Gly500TrpfsTer41	p.G500Wfs*41	ENST00000359013	NM_001024847.2	498	-/T																																																																														
RBM10	0	MSKCC	GRCh37	X	47041404	47041405	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	151	463	0	ENST00000329236.7:c.1519dup	p.Gln507ProfsTer7	p.Q507Pfs*7	ENST00000329236	NM_001204466.1	505	gac/gaCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	622	704	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	73	386	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528711	8528711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	82	435	0	ENST00000356435.5:c.421C>T	p.Arg141Cys	p.R141C	ENST00000356435		141	Cgc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242486	+	inframe_deletion	In_Frame_Del	DEL	TTAAGAGAAGCAACATCT	TTAAGAGAAGCAACATCT	-	rs121913440		P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	382	527	0	ENST00000275493.2:c.2239_2256del	p.Leu747_Ser752del	p.L747_S752del	ENST00000275493	NM_005228.3	747	TTAAGAGAAGCAACATCT/-																																																																														
SPEN	0	MSKCC	GRCh37	1	16242713	16242713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	138	624	0	ENST00000375759.3:c.1334T>A	p.Leu445His	p.L445H	ENST00000375759	NM_015001.2	445	cTt/cAt																																																																														
DDR2	0	MSKCC	GRCh37	1	162743346	162743346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	86	446	0	ENST00000367921.3:c.1816G>T	p.Ala606Ser	p.A606S	ENST00000367921	NM_006182.2	606	Gct/Tct																																																																														
FLT1	0	MSKCC	GRCh37	13	28901634	28901634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	98	574	0	ENST00000282397.4:c.2761C>G	p.Leu921Val	p.L921V	ENST00000282397	NM_002019.4	921	Ctc/Gtc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934546	9934546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	95	562	0	ENST00000330684.3:c.1609G>T	p.Val537Phe	p.V537F	ENST00000330684	NM_001134407.1	537	Gtt/Ttt																																																																														
TOP1	0	MSKCC	GRCh37	20	39708741	39708741	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	54	599	0	ENST00000361337.2:c.352G>C	p.Asp118His	p.D118H	ENST00000361337	NM_003286.2	118	Gat/Cat																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177575	56177575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	33	429	0	ENST00000399503.3:c.2548A>T	p.Thr850Ser	p.T850S	ENST00000399503	NM_005921.1	850	Acc/Tcc																																																																														
NPM1	0	MSKCC	GRCh37	5	170827161	170827161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	183	305	0	ENST00000296930.5:c.529G>T	p.Asp177Tyr	p.D177Y	ENST00000296930	NM_002520.6	177	Gat/Tat																																																																														
EGFR	0	MSKCC	GRCh37	7	55268918	55268918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	140	797	0	ENST00000275493.2:c.2984C>T	p.Ser995Phe	p.S995F	ENST00000275493	NM_005228.3	995	tCc/tTc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209600	98209600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	81	672	0	ENST00000331920.6:c.3938C>G	p.Pro1313Arg	p.P1313R	ENST00000331920	NM_000264.3	1313	cCa/cGa																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0024030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	50	519	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0024030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	107	865	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
ELF3	0	MSKCC	GRCh37	1	201983134	201983150	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AGCTGAGCCGGGCCATG	AGCTGAGCCGGGCCATG	-			P-0024030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	29	698	0	ENST00000359651.3:c.985_1001del	p.Leu329ValfsTer136	p.L329Vfs*136	ENST00000359651		328	aAGCTGAGCCGGGCCATG/a																																																																														
ERBB3	0	MSKCC	GRCh37	12	56477666	56477666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	58	648	0	ENST00000267101.3:c.214G>A	p.Ala72Thr	p.A72T	ENST00000267101	NM_001982.3	72	Gcc/Acc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99440009	99440009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	36	441	0	ENST00000268035.6:c.977G>A	p.Gly326Asp	p.G326D	ENST00000268035	NM_000875.3	326	gGt/gAt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993576	72993576	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	41	660	0	ENST00000268489.5:c.469T>A	p.Cys157Ser	p.C157S	ENST00000268489	NM_006885.3	157	Tgt/Agt																																																																														
CDK12	0	MSKCC	GRCh37	17	37657658	37657658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	48	610	1	ENST00000447079.4:c.2575G>A	p.Asp859Asn	p.D859N	ENST00000447079	NM_015083.1	859	Gat/Aat																																																																														
BBC3	0	MSKCC	GRCh37	19	47725049	47725049	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	52	894	1	ENST00000449228.1:c.695C>G	p.Thr232Ser	p.T232S	ENST00000449228	NM_001127240.2	232	aCc/aGc																																																																														
NSD1	0	MSKCC	GRCh37	5	176562659	176562659	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	59	645	0	ENST00000439151.2:c.555G>C	p.Glu185Asp	p.E185D	ENST00000439151	NM_022455.4	185	gaG/gaC																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969369	44969369	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	30	627	0	ENST00000377967.4:c.4051C>T	p.Arg1351Ter	p.R1351*	ENST00000377967	NM_021140.2	1351	Cga/Tga																																																																														
FLCN	0	MSKCC	GRCh37	17	17118498	17118498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0024225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	26	685	1	ENST00000285071.4:c.1432+1G>A		p.X478_splice	ENST00000285071	NM_144997.5	478																																																																															
CDK12	0	MSKCC	GRCh37	17	37682537	37682537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	27	393	0	ENST00000447079.4:c.3728G>T	p.Arg1243Ile	p.R1243I	ENST00000447079	NM_015083.1	1243	aGa/aTa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37866444	37866445	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	125	877	0	ENST00000269571.5:c.750dup	p.Asp251Ter	p.D251*	ENST00000269571		250	tct/tcTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	40	843	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	14	436	1	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741886	17741886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	42	176	1	ENST00000250003.3:c.557C>T	p.Pro186Leu	p.P186L	ENST00000250003	NM_002478.4	186	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	71	722	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
CDC73	0	MSKCC	GRCh37	1	193172955	193172955	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	20	663	0	ENST00000367435.3:c.1003C>G	p.Pro335Ala	p.P335A	ENST00000367435	NM_024529.4	335	Cct/Gct																																																																														
PRKD1	0	MSKCC	GRCh37	14	30194805	30194805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	33	965	0	ENST00000331968.5:c.340C>T	p.Leu114Phe	p.L114F	ENST00000331968	NM_002742.2	114	Ctt/Ttt																																																																														
TSHR	0	MSKCC	GRCh37	14	81609973	81609973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	34	369	0	ENST00000298171.2:c.1571C>G	p.Thr524Ser	p.T524S	ENST00000298171	NM_000369.2	524	aCc/aGc																																																																														
NF1	0	MSKCC	GRCh37	17	29486083	29486083	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	10	752	0	ENST00000358273.4:c.260T>A	p.Leu87Ter	p.L87*	ENST00000358273	NM_001042492.2	87	tTg/tAg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15289753	15289753	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	188	998	1	ENST00000263388.2:c.3719-1G>A		p.X1240_splice	ENST00000263388	NM_000435.2	1240																																																																															
JAK3	0	MSKCC	GRCh37	19	17940999	17940999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	206	1193	1	ENST00000458235.1:c.3125G>A	p.Arg1042Gln	p.R1042Q	ENST00000458235	NM_000215.3	1042	cGg/cAg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99155399	99155399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	38	581	0	ENST00000074304.5:c.625C>G	p.Arg209Gly	p.R209G	ENST00000074304	NM_001134224.1	209	Cga/Gga																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715604	30715604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	10	330	0	ENST00000359013.4:c.1337C>T	p.Thr446Ile	p.T446I	ENST00000359013	NM_001024847.2	446	aCt/aTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107175	27107175	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	61	700	0	ENST00000324856.7:c.6787del	p.Val2263TyrfsTer4	p.V2263Yfs*4	ENST00000324856	NM_006015.4	2262	tcG/tc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	58	840	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TSHR	0	MSKCC	GRCh37	14	81606082	81606082	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0024238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	66	774	0	ENST00000298171.2:c.752A>C	p.Glu251Ala	p.E251A	ENST00000298171	NM_000369.2	251	gAa/gCa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	58	811	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	145	600	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50455075	50455075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	102	412	0	ENST00000331340.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000331340	NM_006060.4	208	Cga/Tga																																																																														
TERT	0	MSKCC	GRCh37	5	1293664	1293664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111952055		P-0024239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	170	767	0	ENST00000310581.5:c.1337G>A	p.Arg446His	p.R446H	ENST00000310581	NM_198253.2	446	cGt/cAt																																																																														
NRAS	0	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	198	739	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
INHBA	0	MSKCC	GRCh37	7	41739824	41739824	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	60	544	0	ENST00000242208.4:c.149C>G	p.Ser50Cys	p.S50C	ENST00000242208	NM_002192.2	50	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0024245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	516	835	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932373	36932373	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	572	917	0	ENST00000361632.4:c.2096T>A	p.Leu699Gln	p.L699Q	ENST00000361632		699	cTg/cAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434324	49434324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	628	1067	0	ENST00000301067.7:c.7229G>T	p.Arg2410Leu	p.R2410L	ENST00000301067	NM_003482.3	2410	cGa/cTa																																																																														
RB1	0	MSKCC	GRCh37	13	48881543	48881543	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0024245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	136	416	0	ENST00000267163.4:c.264+1G>C		p.X88_splice	ENST00000267163	NM_000321.2	88																																																																															
CTNNB1	0	MSKCC	GRCh37	3	41268828	41268828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	266	658	0	ENST00000349496.5:c.1066G>T	p.Ala356Ser	p.A356S	ENST00000349496	NM_001904.3	356	Gct/Tct																																																																														
FLT4	0	MSKCC	GRCh37	5	180038452	180038452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	477	901	0	ENST00000261937.6:c.3565C>A	p.Arg1189Ser	p.R1189S	ENST00000261937	NM_182925.4	1189	Cgc/Agc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157521944	157521944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024245-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	369	631	1	ENST00000346085.5:c.4216C>A	p.Gln1406Lys	p.Q1406K	ENST00000346085	NM_020732.3	1406	Cag/Aag																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987145	36987145	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	31	854	0	ENST00000354822.5:c.544A>T	p.Asn182Tyr	p.N182Y	ENST00000354822	NM_001079668.2	182	Aac/Tac																																																																														
PTEN	0	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	262	646	0	ENST00000371953.3:c.380G>T	p.Gly127Val	p.G127V	ENST00000371953	NM_000314.4	127	gGa/gTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	761	1145	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc																																																																														
SPEN	0	MSKCC	GRCh37	1	16262293	16262294	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0024249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	21	320	0	ENST00000375759.3:c.9558_9559delinsCT	p.His3187Tyr	p.H3187Y	ENST00000375759	NM_015001.2	3186	ctGCac/ctCTac																																																																														
BRCA2	0	MSKCC	GRCh37	13	32930652	32930652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	289	608	1	ENST00000380152.3:c.7523G>A	p.Gly2508Asp	p.G2508D	ENST00000380152		2508	gGc/gAc																																																																														
ROS1	0	MSKCC	GRCh37	6	117709079	117709079	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	46	803	0	ENST00000368508.3:c.1878C>G	p.Phe626Leu	p.F626L	ENST00000368508	NM_002944.2	626	ttC/ttG																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	283	917	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81953214	81953214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	176	484	2	ENST00000359376.3:c.2180G>A	p.Arg727Gln	p.R727Q	ENST00000359376	NM_002661.3	727	cGa/cAa																																																																														
JUN	0	MSKCC	GRCh37	1	59248501	59248502	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	215	839	0	ENST00000371222.2:c.241dup	p.Ile81AsnfsTer26	p.I81Nfs*26	ENST00000371222	NM_002228.3	81	atc/aAtc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156844393	156844395	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0024258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	190	1135	0	ENST00000524377.1:c.1231_1233del	p.Lys411del	p.K411del	ENST00000524377	NM_002529.3	409	gAGAag/gag																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50492582	50492582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	204	911	2	ENST00000394963.4:c.1478G>A	p.Arg493Gln	p.R493Q	ENST00000394963	NM_003076.4	493	cGa/cAa																																																																														
INSR	0	MSKCC	GRCh37	19	7267451	7267451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	74	689	0	ENST00000302850.5:c.557G>T	p.Cys186Phe	p.C186F	ENST00000302850	NM_000208.2	186	tGt/tTt																																																																														
GNAS	0	MSKCC	GRCh37	20	57466897	57466897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	76	372	0	ENST00000371085.3:c.116C>T	p.Ala39Val	p.A39V	ENST00000371085	NM_000516.4	39	gCc/gTc																																																																														
ATR	0	MSKCC	GRCh37	3	142257420	142257420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			425	149	660	0	ENST00000350721.4:c.3629C>T	p.Ser1210Phe	p.S1210F	ENST00000350721	NM_001184.3	1210	tCc/tTc																																																																														
GNAS	0	MSKCC	GRCh37	20	57485783	57485783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			807	55	606	1	ENST00000371085.3:c.1084C>A	p.His362Asn	p.H362N	ENST00000371085	NM_000516.4	362	Cat/Aat																																																																														
RAC2	0	MSKCC	GRCh37	22	37628894	37628923	+	inframe_deletion	In_Frame_Del	DEL	TGTCCCACAGCCCCAGGTTCACTGGCTTGC	TGTCCCACAGCCCCAGGTTCACTGGCTTGC	-			P-0024259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	331	1007	2	ENST00000249071.6:c.143_172del	p.Ser48_Asp57del	p.S48_D57del	ENST00000249071	NM_002872.4	48	aGCAAGCCAGTGAACCTGGGGCTGTGGGACAct/act																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185195165	185195165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	86	540	1	ENST00000265026.3:c.2482G>A	p.Glu828Lys	p.E828K	ENST00000265026	NM_004721.4	828	Gaa/Aaa																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185195184	185195184	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			501	74	493	0	ENST00000265026.3:c.2501G>A	p.Arg834Lys	p.R834K	ENST00000265026	NM_004721.4	834	aGg/aAg																																																																														
CCND3	0	MSKCC	GRCh37	6	41908225	41908225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	91	1122	0	ENST00000372991.4:c.297G>T	p.Leu99Phe	p.L99F	ENST00000372991	NM_001760.3	99	ttG/ttT																																																																														
KDM6A	0	MSKCC	GRCh37	X	44870225	44870225	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024259-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			684	152	905	0	ENST00000377967.4:c.404G>T	p.Gly135Val	p.G135V	ENST00000377967	NM_021140.2	135	gGt/gTt																																																																														
SPEN	0	MSKCC	GRCh37	1	16255118	16255118	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0024266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	159	458	1	ENST00000375759.3:c.2383C>T	p.Arg795Ter	p.R795*	ENST00000375759	NM_015001.2	795	Cga/Tga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32900243	32900243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	128	538	0	ENST00000380152.3:c.431T>C	p.Val144Ala	p.V144A	ENST00000380152		144	gTt/gCt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778128	3778128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	349	1110	0	ENST00000262367.5:c.6920C>G	p.Ser2307Cys	p.S2307C	ENST00000262367	NM_004380.2	2307	tCc/tGc																																																																														
NF1	0	MSKCC	GRCh37	17	29533286	29533332	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCTGTGTATTGTCACTCGGTTGAACTTCGAAATATGTTTGGTGAA	ATGCTGTGTATTGTCACTCGGTTGAACTTCGAAATATGTTTGGTGAA	-			P-0024266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	85	432	0	ENST00000358273.4:c.1290_1336del	p.Ala431ThrfsTer3	p.A431Tfs*3	ENST00000358273	NM_001042492.2	430	gATGCTGTGTATTGTCACTCGGTTGAACTTCGAAATATGTTTGGTGAA/g																																																																														
MSH2	0	MSKCC	GRCh37	2	47710033	47710033	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	112	434	0	ENST00000233146.2:c.2750C>G	p.Ala917Gly	p.A917G	ENST00000233146	NM_000251.2	917	gCa/gGa																																																																														
MED12	0	MSKCC	GRCh37	X	70339243	70339243	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	235	809	0	ENST00000374080.3:c.120T>G	p.Asn40Lys	p.N40K	ENST00000374080		40	aaT/aaG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	146	758	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	156	846	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099124	27099124	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0014968-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			351	24	657	0	ENST00000324856.7:c.3539+1G>T		p.X1180_splice	ENST00000324856	NM_006015.4	1180																																																																															
CIC	0	MSKCC	GRCh37	19	42797895	42797895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014968-T05-IM6									Unknown	SOMATIC				MSK-IMPACT			509	34	958	0	ENST00000575354.2:c.3947G>A	p.Gly1316Glu	p.G1316E	ENST00000575354	NM_015125.3	1316	gGg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	247	827	0	ENST00000269305.4:c.776A>T	p.Asp259Val	p.D259V	ENST00000269305	NM_001126112.2	259	gAc/gTc																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134487	41134487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	91	670	0	ENST00000379561.5:c.1141C>T	p.Leu381Phe	p.L381F	ENST00000379561	NM_002015.3	381	Ctc/Ttc																																																																														
NBN	0	MSKCC	GRCh37	8	90958474	90958474	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021908-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	74	632	0	ENST00000265433.3:c.1964delT	p.Leu655TyrfsTer2	p.L655Yfs*2	ENST00000265433	NM_002485.4	655	tTa/ta																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	660	734	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0021919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	210	755	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0021919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	121	473	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948745	71948745	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	169	772	3	ENST00000298229.2:c.3457C>T	p.Gln1153Ter	p.Q1153*	ENST00000298229	NM_001567.3	1153	Cag/Tag																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426836	121426836	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0021924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	122	442	1	ENST00000257555.6:c.526+1G>A		p.X176_splice	ENST00000257555		176																																																																															
TP53	0	MSKCC	GRCh37	17	7579491	7579491	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	459	766	0	ENST00000269305.4:c.196delA	p.Met66CysfsTer57	p.M66Cfs*57	ENST00000269305	NM_001126112.2	66	Atg/tg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118342741	118342741	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	38	322	0	ENST00000534358.1:c.867G>C	p.Lys289Asn	p.K289N	ENST00000534358	NM_005933.3	289	aaG/aaC																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188116	32188262	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTCCTGGTGCTTCTCTCACCCTCCTTCTCTACCTCCCACCTCCTGATACCCTCTACCCCCATACCTGTGCGTCCAGGTGGGCAGAGGCAGGAGAAAGAGCCCACCCGGTCAATGCAGGTGGATCCCGGGGCACAGGTGGCAGCAA	TCCTCCTGGTGCTTCTCTCACCCTCCTTCTCTACCTCCCACCTCCTGATACCCTCTACCCCCATACCTGTGCGTCCAGGTGGGCAGAGGCAGGAGAAAGAGCCCACCCGGTCAATGCAGGTGGATCCCGGGGCACAGGTGGCAGCAA	-			P-0021924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	123	382	0	ENST00000375023.3:c.1079_1160-55delTTGCTGCCACCTGTGCCCCGGGATCCACCTGCATTGACCGGGTGGGCTCTTTCTCCTGCCTCTGCCCACCTGGACGCACAGGTATGGGGGTAGAGGGTATCAGGAGGTGGGAGGTAGAGAAGGAGGGTGAGAGAAGCACCAGGAGGA		p.X360_splice	ENST00000375023	NM_004557.3	360																																																																															
RAD21	0	MSKCC	GRCh37	8	117869547	117869547	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	123	590	0	ENST00000297338.2:c.647A>C	p.Lys216Thr	p.K216T	ENST00000297338	NM_006265.2	216	aAg/aCg																																																																														
BCOR	0	MSKCC	GRCh37	X	39932825	39932825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	200	711	0	ENST00000378444.4:c.1774C>A	p.Pro592Thr	p.P592T	ENST00000378444	NM_001123385.1	592	Cca/Aca																																																																														
PAK7	0	MSKCC	GRCh37	20	9561547	9561547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	125	581	1	ENST00000353224.5:c.235G>A	p.Glu79Lys	p.E79K	ENST00000353224	NM_177990.2	79	Gaa/Aaa																																																																														
TP63	0	MSKCC	GRCh37	3	189456447	189456447	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	36	488	0	ENST00000264731.3:c.208C>T	p.Gln70Ter	p.Q70*	ENST00000264731	NM_003722.4	70	Cag/Tag																																																																														
NF1	0	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	82	445	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061141	38061141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	27	180	0	ENST00000250448.2:c.848G>A	p.Gly283Glu	p.G283E	ENST00000250448	NM_004496.3	283	gGg/gAg																																																																														
ATR	0	MSKCC	GRCh37	3	142176504	142176504	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	107	533	0	ENST00000350721.4:c.7597C>T	p.Arg2533Ter	p.R2533*	ENST00000350721	NM_001184.3	2533	Cga/Tga																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944959	31944959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	41	549	0	ENST00000340398.3:c.142C>T	p.Leu48Phe	p.L48F	ENST00000340398	NM_001013699.2	48	Ctt/Ttt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426270	49426270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	153	929	1	ENST00000301067.7:c.12218C>T	p.Ser4073Leu	p.S4073L	ENST00000301067	NM_003482.3	4073	tCa/tTa																																																																														
PTPN11	0	MSKCC	GRCh37	12	112926255	112926255	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	128	630	0	ENST00000351677.2:c.1388T>A	p.Ile463Asn	p.I463N	ENST00000351677	NM_002834.3	463	aTt/aAt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857388	9857388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	95	582	1	ENST00000330684.3:c.4013G>A	p.Gly1338Glu	p.G1338E	ENST00000330684	NM_001134407.1	1338	gGg/gAg																																																																														
PALB2	0	MSKCC	GRCh37	16	23625323	23625323	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	134	714	1	ENST00000261584.4:c.3201+2T>A		p.X1067_splice	ENST00000261584	NM_024675.3	1067																																																																															
TP53	0	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	142	756	0	ENST00000269305.4:c.737T>G	p.Met246Arg	p.M246R	ENST00000269305	NM_001126112.2	246	aTg/aGg																																																																														
CCNE1	0	MSKCC	GRCh37	19	30313215	30313216	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	153	884	0	ENST00000262643.3:c.909_910delinsTA	p.Leu304Met	p.L304M	ENST00000262643	NM_001238.2	303	gcCTtg/gcTAtg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566859	212566859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	43	373	0	ENST00000342788.4:c.1322G>A	p.Gly441Asp	p.G441D	ENST00000342788	NM_005235.2	441	gGc/gAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827885	40827885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	107	611	2	ENST00000373198.4:c.2543G>A	p.Gly848Glu	p.G848E	ENST00000373198	NM_133170.3	848	gGa/gAa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62294198	62294237	+	frameshift_variant	Frame_Shift_Del	DEL	AGAAGGTGGCAAGTCGCTCCTGTCATTTCTACAACAACGT	AGAAGGTGGCAAGTCGCTCCTGTCATTTCTACAACAACGT	-			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	46	721	0	ENST00000508582.2:c.573_610+2del		p.KKVASRSCHFYNNV189fs	ENST00000508582		189	aAGAAGGTGGCAAGTCGCTCCTGTCATTTCTACAACAACGTa/aa																																																																														
WHSC1	0	MSKCC	GRCh37	4	1978301	1978301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	160	777	3	ENST00000382891.5:c.3721G>A	p.Glu1241Lys	p.E1241K	ENST00000382891	NM_133335.3	1241	Gag/Aag																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55131193	55131193	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	127	581	0	ENST00000257290.5:c.736C>T	p.Gln246Ter	p.Q246*	ENST00000257290	NM_006206.4	246	Caa/Taa																																																																														
MDC1	0	MSKCC	GRCh37	6	30673241	30673241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	87	515	0	ENST00000376406.3:c.3719C>T	p.Pro1240Leu	p.P1240L	ENST00000376406	NM_014641.2	1240	cCt/cTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878620	151878620	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	127	697	2	ENST00000262189.6:c.6325T>A	p.Phe2109Ile	p.F2109I	ENST00000262189	NM_170606.2	2109	Ttt/Att																																																																														
PREX2	0	MSKCC	GRCh37	8	69020458	69020458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	136	784	0	ENST00000288368.4:c.2830G>A	p.Glu944Lys	p.E944K	ENST00000288368	NM_024870.2	944	Gaa/Aaa																																																																														
NBN	0	MSKCC	GRCh37	8	90960096	90960096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	52	411	1	ENST00000265433.3:c.1870C>T	p.Arg624Cys	p.R624C	ENST00000265433	NM_002485.4	624	Cgt/Tgt																																																																														
NBN	0	MSKCC	GRCh37	8	90960110	90960110	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	45	346	1	ENST00000265433.3:c.1856A>T	p.Glu619Val	p.E619V	ENST00000265433	NM_002485.4	619	gAa/gTa																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128321935	128321936	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	120	650	1	ENST00000265960.3:c.824_825delinsTT	p.Ser275Phe	p.S275F	ENST00000265960	NM_001006617.1	275	tCC/tTT																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15833834	15833834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	132	680	0	ENST00000307771.7:c.592C>T	p.Pro198Ser	p.P198S	ENST00000307771	NM_005089.3	198	Cct/Tct																																																																														
RBM10	0	MSKCC	GRCh37	X	47045731	47045731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	71	831	0	ENST00000329236.7:c.2378G>T	p.Trp793Leu	p.W793L	ENST00000329236	NM_001204466.1	793	tGg/tTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63410945	63410945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	149	748	1	ENST00000330258.3:c.2222C>T	p.Pro741Leu	p.P741L	ENST00000330258	NM_152424.3	741	cCc/cTc																																																																														
ATRX	0	MSKCC	GRCh37	X	76778830	76778830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	139	707	0	ENST00000373344.5:c.6749G>A	p.Gly2250Glu	p.G2250E	ENST00000373344	NM_000489.3	2250	gGa/gAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0024024-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	20	754	1	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	78	824	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717724	89717724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	100	655	0	ENST00000371953.3:c.749G>T	p.Cys250Phe	p.C250F	ENST00000371953	NM_000314.4	250	tGt/tTt																																																																														
PGR	0	MSKCC	GRCh37	11	100999728	100999728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	63	966	0	ENST00000325455.5:c.74C>A	p.Ser25Tyr	p.S25Y	ENST00000325455	NM_001202474.3	25	tCc/tAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	58	861	2	ENST00000269305.4:c.743_744delinsTT	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGG/cTT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212295678	212295678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	31	591	0	ENST00000342788.4:c.2635G>C	p.Gly879Arg	p.G879R	ENST00000342788	NM_005235.2	879	Gga/Cga																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091749	29091749	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	27	411	0	ENST00000328354.6:c.1208G>T	p.Gly403Val	p.G403V	ENST00000328354	NM_007194.3	403	gGg/gTg																																																																														
SOX17	0	MSKCC	GRCh37	8	55371883	55371883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	21	353	0	ENST00000297316.4:c.575del	p.Pro192ArgfsTer195	p.P192Rfs*195	ENST00000297316	NM_022454.3	191	ggC/gg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518349	8518349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	15	410	0	ENST00000356435.5:c.1042C>A	p.Pro348Thr	p.P348T	ENST00000356435		348	Cct/Act																																																																														
STAG2	0	MSKCC	GRCh37	X	123184090	123184090	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0024035-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	27	611	0	ENST00000218089.9:c.948G>T	p.Met316Ile	p.M316I	ENST00000218089	NM_001042749.1	316	atG/atT																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024036-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	47	750	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	306	753	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	35	405	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
STK11	0	MSKCC	GRCh37	19	1220410	1220410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	400	896	1	ENST00000326873.7:c.503A>T	p.His168Leu	p.H168L	ENST00000326873	NM_000455.4	168	cAt/cTt																																																																														
RBM10	0	MSKCC	GRCh37	X	47038562	47038562	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	167	883	0	ENST00000329236.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000329236	NM_001204466.1	165	Gag/Tag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032204	10032204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	278	825	0	ENST00000330684.3:c.619G>T	p.Asp207Tyr	p.D207Y	ENST00000330684	NM_001134407.1	207	Gac/Tac																																																																														
EPHB1	0	MSKCC	GRCh37	3	134880864	134880864	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	210	619	0	ENST00000398015.3:c.1427A>G	p.His476Arg	p.H476R	ENST00000398015	NM_004441.4	476	cAc/cGc																																																																														
HGF	0	MSKCC	GRCh37	7	81355323	81355323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	46	439	0	ENST00000222390.5:c.1051G>A	p.Glu351Lys	p.E351K	ENST00000222390	NM_000601.4	351	Gaa/Aaa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87635179	87635179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	159	645	0	ENST00000277120.3:c.2231G>A	p.Arg744Lys	p.R744K	ENST00000277120		744	aGg/aAg																																																																														
AMER1	0	MSKCC	GRCh37	X	63411537	63411537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	132	942	0	ENST00000330258.3:c.1630C>G	p.Pro544Ala	p.P544A	ENST00000330258	NM_152424.3	544	Ccc/Gcc																																																																														
ATRX	0	MSKCC	GRCh37	X	76931746	76931746	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024037-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	77	732	0	ENST00000373344.5:c.3784G>T	p.Asp1262Tyr	p.D1262Y	ENST00000373344	NM_000489.3	1262	Gat/Tat																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0024040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	83	696	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0024040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	47	502	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
ALK	0	MSKCC	GRCh37	2	29455179	29455179	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148001139		P-0024040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	59	550	4	ENST00000389048.3:c.2623G>A	p.Gly875Arg	p.G875R	ENST00000389048	NM_004304.4	875	Gga/Aga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0024049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	31	651	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151960098	151960099	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0024049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	36	481	0	ENST00000262189.6:c.1299+2dup		p.X433_splice	ENST00000262189	NM_170606.2	433																																																																															
CBFB	0	MSKCC	GRCh37	16	67070642	67070642	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0024049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	21	268	0	ENST00000412916.2:c.268del	p.Arg90GlufsTer8	p.R90Efs*8	ENST00000412916		89	gAa/ga																																																																														
MAP3K1	4214	MSKCC	GRCh37	5	56178136	56178137	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0024049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	29	465	0	ENST00000399503.3:c.3110_3111del	p.Lys1037ArgfsTer4	p.K1037Rfs*4	ENST00000399503	NM_005921.1	1037	AAa/a																																																																														
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	102	773	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	79	690	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
CSF3R	0	MSKCC	GRCh37	1	36939160	36939160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	78	780	0	ENST00000361632.4:c.549G>C	p.Gln183His	p.Q183H	ENST00000361632		183	caG/caC																																																																														
DICER1	0	MSKCC	GRCh37	14	95570039	95570039	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	115	589	0	ENST00000343455.3:c.3694A>T	p.Ser1232Cys	p.S1232C	ENST00000343455	NM_177438.2	1232	Agc/Tgc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274266	10274266	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	32	295	0	ENST00000330684.3:c.3G>T	p.Met1?	p.M1?	ENST00000330684	NM_001134407.1	1	atG/atT																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55127276	55127276	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	47	484	0	ENST00000257290.5:c.64C>G	p.Leu22Val	p.L22V	ENST00000257290	NM_006206.4	22	Ctc/Gtc																																																																														
RASA1	0	MSKCC	GRCh37	5	86658399	86658400	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	19	243	0	ENST00000274376.6:c.1364_1365del	p.Asp455GlyfsTer6	p.D455Gfs*6	ENST00000274376	NM_002890.2	455	gAT/g																																																																														
STAG2	0	MSKCC	GRCh37	X	123227928	123227928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	55	774	0	ENST00000218089.9:c.3639G>A	p.Met1213Ile	p.M1213I	ENST00000218089	NM_001042749.1	1213	atG/atA																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860109	152860109	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	128	376	0	ENST00000406277.2:c.319G>T	p.Glu107Ter	p.E107*	ENST00000406277	NM_152274.4	107	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	579	642	1	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45656878	45656878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	169	602	0	ENST00000407780.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000407780	NM_001283052.1	93	cGg/cAg																																																																														
JUN	0	MSKCC	GRCh37	1	59248494	59248513	+	frameshift_variant	Frame_Shift_Del	DEL	GGACTGGATTATCAGGCGCT	GGACTGGATTATCAGGCGCT	AGACTGCGCG			P-0024118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	407	586	2	ENST00000371222.2:c.230_249delinsCGCGCAGTCT	p.Glu77AlafsTer24	p.E77Afs*24	ENST00000371222	NM_002228.3	77	gAGCGCCTGATAATCCAGTCC/gCGCGCAGTCT																																																																														
MGA	0	MSKCC	GRCh37	15	42005541	42005541	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0024118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	342	637	0	ENST00000219905.7:c.3278del	p.Gly1093AspfsTer40	p.G1093Dfs*40	ENST00000219905	NM_001164273.1	1093	Gga/ga																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0024122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	146	509	3	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0024122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	280	692	1	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
TOP1	0	MSKCC	GRCh37	20	39709868	39709870	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0024122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	109	371	0	ENST00000361337.2:c.504_506del	p.Glu169del	p.E169del	ENST00000361337	NM_003286.2	165	ctAGAa/cta																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245486	153245486	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	157	603	3	ENST00000281708.4:c.1705G>T	p.Glu569Ter	p.E569*	ENST00000281708	NM_033632.3	569	Gag/Tag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245521	153245521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	120	484	0	ENST00000281708.4:c.1670G>T	p.Gly557Val	p.G557V	ENST00000281708	NM_033632.3	557	gGa/gTa																																																																														
APC	0	MSKCC	GRCh37	5	112175358	112175359	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	TTA			P-0024122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	39	350	0	ENST00000257430.4:c.4067_4068insTTA	p.Ser1356_Gly1357insTer	p.S1356_G1357ins*	ENST00000257430	NM_000038.5	1356	tca/tcTTAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0024124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	81	625	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0024124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	27	233	0				ENST00000310581	NM_198253.2																																																																																
ARAF	0	MSKCC	GRCh37	X	47428218	47428218	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0024124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	67	838	1	ENST00000377045.4:c.1178A>T	p.His393Leu	p.H393L	ENST00000377045	NM_001654.4	393	cAc/cTc																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0024125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	263	869	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391966	139391967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	69	700	0	ENST00000277541.6:c.6224dup	p.Thr2076AspfsTer192	p.T2076Dfs*192	ENST00000277541	NM_017617.3	2075	gag/gaAg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139405615	139405615	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199505287		P-0024125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	386	731	2	ENST00000277541.6:c.2576C>T	p.Thr859Met	p.T859M	ENST00000277541	NM_017617.3	859	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	122	839	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0023585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	121	971	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	45	732	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
NF1	0	MSKCC	GRCh37	17	29665728	29665728	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	65	341	0	ENST00000358273.4:c.6826G>T	p.Glu2276Ter	p.E2276*	ENST00000358273	NM_001042492.2	2276	Gag/Tag																																																																														
MYD88	0	MSKCC	GRCh37	3	38181953	38181953	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201772694		P-0023586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	40	622	1	ENST00000396334.3:c.577C>T	p.Arg193Trp	p.R193W	ENST00000396334	NM_002468.4	193	Cgg/Tgg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971205	21971217	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCTGCCAGAGA	GACCTGCCAGAGA	-			P-0023586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	38	578	0	ENST00000304494.5:c.151-10_153del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971205	21971217	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCTGCCAGAGA	GACCTGCCAGAGA	-			P-0023586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	38	578	0	ENST00000304494.5:c.151-10_153del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971205	21971217	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCTGCCAGAGA	GACCTGCCAGAGA	-			P-0023586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	38	578	0	ENST00000304494.5:c.151-10_153del		p.X51_splice	ENST00000304494	NM_000077.4	51																																																																															
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0023591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	297	644	1	ENST00000269305.4:c.572_574del	p.Pro191del	p.P191del	ENST00000269305	NM_001126112.2	191	cCTCag/cag																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	380	774	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
MED12	0	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	349	680	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																																																														
RRAS2	0	MSKCC	GRCh37	11	14303257	14303257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	316	809	0	ENST00000256196.4:c.418G>A	p.Glu140Lys	p.E140K	ENST00000256196		140	Gaa/Aaa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87549163	87549163	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	88	614	0	ENST00000277120.3:c.1720T>A	p.Tyr574Asn	p.Y574N	ENST00000277120		574	Tat/Aat																																																																														
BCOR	0	MSKCC	GRCh37	X	39931811	39931811	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	316	732	1	ENST00000378444.4:c.2788C>A	p.Pro930Thr	p.P930T	ENST00000378444	NM_001123385.1	930	Cca/Aca																																																																														
ETV1	0	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	306	697	2	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874092	151874093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	367	843	0	ENST00000262189.6:c.8445dupA	p.Ser2816IlefsTer6	p.S2816Ifs*6	ENST00000262189	NM_170606.2	2815	-/A																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856545	111856545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	124	429	0	ENST00000341259.2:c.596C>T	p.Ala199Val	p.A199V	ENST00000341259	NM_005475.2	199	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7572942	7572942	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	177	756	0	ENST00000269305.4:c.1167del	p.Pro390LeufsTer32	p.P390Lfs*32	ENST00000269305	NM_001126112.2	389	ggG/gg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470500	25470500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	218	925	0	ENST00000264709.3:c.974C>T	p.Thr325Ile	p.T325I	ENST00000264709	NM_175629.2	325	aCc/aTc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	329	700	2	ENST00000275493.2:c.2317_2319dupCAC	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	71	726	1	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16097825	16097825	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs73281920		P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	18	626	0	ENST00000268712.3:c.59A>C	p.Tyr20Ser	p.Y20S	ENST00000268712	NM_006311.3	20	tAt/tCt																																																																														
MGA	0	MSKCC	GRCh37	15	42054402	42054402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	13	490	1	ENST00000219905.7:c.7586G>A	p.Arg2529Lys	p.R2529K	ENST00000219905	NM_001164273.1	2529	aGa/aAa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11132468	11132468	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	11	713	0	ENST00000344626.4:c.2684A>T	p.Gln895Leu	p.Q895L	ENST00000344626	NM_003072.3	895	cAg/cTg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16097870	16097870	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs76145228		P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	17	260	0	ENST00000268712.3:c.14G>T	p.Gly5Val	p.G5V	ENST00000268712	NM_006311.3	5	gGt/gTt																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197240	26197240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	13	479	1	ENST00000356476.2:c.239A>G	p.Lys80Arg	p.K80R	ENST00000356476		80	aAg/aGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	549	796	1	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157406018	157406018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	100	605	1	ENST00000346085.5:c.2260A>G	p.Ile754Val	p.I754V	ENST00000346085	NM_020732.3	754	Atc/Gtc																																																																														
MYC	0	MSKCC	GRCh37	8	128750789	128750789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	1013	654	0	ENST00000377970.2:c.326C>G	p.Ser109Cys	p.S109C	ENST00000377970	NM_002467.4	109	tCc/tGc																																																																														
CRLF2	0	MSKCC	GRCh37	X	1317539	1317539	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0023597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	338	711	0				ENST00000381566																																																																																	
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	123	891	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398280	25398281	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0023599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	138	904	0	ENST00000256078.4:c.36_38dup	p.Gly13dup	p.G13dup	ENST00000256078	NM_033360.2	13	ggc/ggTGGc																																																																														
NF1	0	MSKCC	GRCh37	17	29550434	29550459	+	splice_region_variant,intron_variant	Splice_Region	DEL	AGTAACAATGAACTTTATGTTACTGC	AGTAACAATGAACTTTATGTTACTGC	-			P-0023599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	33	144	0	ENST00000358273.4:c.1722-26_1722-1del		p.X574_splice	ENST00000358273	NM_001042492.2	574																																																																															
NTRK2	0	MSKCC	GRCh37	9	87339221	87339221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	128	834	0	ENST00000277120.3:c.803C>T	p.Ala268Val	p.A268V	ENST00000277120		268	gCg/gTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0023969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	34	463	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	73	622	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	58	625	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																																																														
APC	0	MSKCC	GRCh37	5	112174760	112174760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	18	400	1	ENST00000257430.4:c.3469G>A	p.Glu1157Lys	p.E1157K	ENST00000257430	NM_000038.5	1157	Gag/Aag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467437	66467437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	51	398	1	ENST00000273854.3:c.832G>A	p.Ala278Thr	p.A278T	ENST00000273854	NM_004439.5	278	Gcc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0023969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	55	751	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716327	52716327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	77	677	0	ENST00000322088.6:c.771G>T	p.Trp257Cys	p.W257C	ENST00000322088	NM_014225.5	257	tgG/tgT																																																																														
ERBB2	0	MSKCC	GRCh37	17	37866417	37866417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	182	688	1	ENST00000269571.5:c.722C>T	p.Ala241Val	p.A241V	ENST00000269571		241	gCt/gTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100916	27100916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	199	716	0	ENST00000324856.7:c.4198C>T	p.Pro1400Ser	p.P1400S	ENST00000324856	NM_006015.4	1400	Cct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	142	757	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RB1	0	MSKCC	GRCh37	13	48881513	48881513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	263	507	0	ENST00000267163.4:c.235G>T	p.Glu79Ter	p.E79*	ENST00000267163	NM_000321.2	79	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	271	798	3	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591846	48591846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	267	720	0	ENST00000342988.3:c.1009G>A	p.Glu337Lys	p.E337K	ENST00000342988	NM_005359.5	337	Gag/Aag																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	175	650	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PRKCI	0	MSKCC	GRCh37	3	169953061	169953061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	228	664	0	ENST00000295797.4:c.145G>A	p.Gly49Ser	p.G49S	ENST00000295797	NM_002740.5	49	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	11	781	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	13	365	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																																																														
RB1	0	MSKCC	GRCh37	13	49039468	49039468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	28	682	0	ENST00000267163.4:c.2453G>T	p.Gly818Val	p.G818V	ENST00000267163	NM_000321.2	818	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	288	885	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																																																														
CDK12	0	MSKCC	GRCh37	17	37619281	37619281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	171	503	0	ENST00000447079.4:c.957C>G	p.Tyr319Ter	p.Y319*	ENST00000447079	NM_015083.1	319	taC/taG																																																																														
CDK12	0	MSKCC	GRCh37	17	37618522	37618523	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0024076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	318	660	0	ENST00000447079.4:c.199dup	p.Ile67AsnfsTer8	p.I67Nfs*8	ENST00000447079	NM_015083.1	66	-/A																																																																														
PTPN11	0	MSKCC	GRCh37	12	112926270	112926271	+	missense_variant	Missense_Mutation	DNP	CG	CG	TT			P-0024082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	340	621	3	ENST00000351677.2:c.1403_1404delinsTT	p.Thr468Ile	p.T468I	ENST00000351677	NM_002834.3	468	aCG/aTT																																																																														
NF1	0	MSKCC	GRCh37	17	29483000	29483000	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0024082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	178	364	0	ENST00000358273.4:c.61-1G>T		p.X21_splice	ENST00000358273	NM_001042492.2	21																																																																															
STAT3	0	MSKCC	GRCh37	17	40491367	40491367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0024082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	229	833	0	ENST00000264657.5:c.433G>A	p.Glu145Lys	p.E145K	ENST00000264657	NM_139276.2	145	Gag/Aag																																																																														
STK11	0	MSKCC	GRCh37	19	1219336	1219370	+	protein_altering_variant	In_Frame_Del	DEL	GAGTACTGCGTGTGTGGCATGCAGGAAATGCTGGA	GAGTACTGCGTGTGTGGCATGCAGGAAATGCTGGA	CATGC			P-0024082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	352	869	4	ENST00000326873.7:c.388_422delinsCATGC	p.Glu130_Asp141delinsHisAla	p.E130_D141delinsHA	ENST00000326873	NM_000455.4	130	GAGTACTGCGTGTGTGGCATGCAGGAAATGCTGGAc/CATGCc																																																																														
INSR	0	MSKCC	GRCh37	19	7152896	7152896	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0024082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	349	733	0	ENST00000302850.5:c.2072C>G	p.Ser691Cys	p.S691C	ENST00000302850	NM_000208.2	691	tCt/tGt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610277	10610278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0024082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	509	961	0	ENST00000171111.5:c.432dup	p.Ile145HisfsTer29	p.I145Hfs*29	ENST00000171111	NM_203500.1	144	-/C																																																																														
SHQ1	0	MSKCC	GRCh37	3	72890222	72890223	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0024082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	168	679	0	ENST00000325599.8:c.459dup	p.Arg154ThrfsTer11	p.R154Tfs*11	ENST00000325599	NM_018130.2	153	-/A																																																																														
PARK2	0	MSKCC	GRCh37	6	162622243	162622243	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0024082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	152	625	2	ENST00000366898.1:c.454G>T	p.Gly152Cys	p.G152C	ENST00000366898	NM_004562.2	152	Ggc/Tgc																																																																														
LYN	0	MSKCC	GRCh37	8	56911041	56911041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0024087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	172	612	0	ENST00000519728.1:c.1187A>G	p.Glu396Gly	p.E396G	ENST00000519728	NM_002350.3	396	gAg/gGg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0024089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	100	600	1	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																														
PTEN	0	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0024089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	214	521	0	ENST00000371953.3:c.176C>G	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	119	794	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426027	49426049	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGAAGGTTCTGGGTCATGGA	CCCAGAAGGTTCTGGGTCATGGA	-			P-0024089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	94	757	0	ENST00000301067.7:c.12439_12461del	p.Ser4147ProfsTer13	p.S4147Pfs*13	ENST00000301067	NM_003482.3	4147	TCCATGACCCAGAACCTTCTGGGc/c																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0024089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	77	462	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247294	153247294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0024089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	105	498	0	ENST00000281708.4:c.1508C>T	p.Ala503Val	p.A503V	ENST00000281708	NM_033632.3	503	gCa/gTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0024090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1369	52	790	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987025	36987025	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0024090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	52	630	0	ENST00000354822.5:c.664G>T	p.Glu222Ter	p.E222*	ENST00000354822	NM_001079668.2	222	Gag/Tag																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987031	36987031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0024090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	47	628	0	ENST00000354822.5:c.658G>C	p.Glu220Gln	p.E220Q	ENST00000354822	NM_001079668.2	220	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0024093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	127	547	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
B2M	0	MSKCC	GRCh37	15	45007794	45007794	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0024093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	67	433	0	ENST00000558401.1:c.241T>G	p.Ser81Ala	p.S81A	ENST00000558401	NM_004048.2	81	Tct/Gct																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469996	25469997	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AGCTC			P-0024093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	82	534	0	ENST00000264709.3:c.1041_1045dup	p.Ser349Ter	p.S349*	ENST00000264709	NM_175629.2	349	tcg/tGAGCTcg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27089778	27089778	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0024096-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	105	585	0	ENST00000324856.7:c.2732+2T>G		p.X911_splice	ENST00000324856	NM_006015.4	911																																																																															
GPS2	0	MSKCC	GRCh37	17	7216753	7216753	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0024097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	51	525	0	ENST00000380728.2:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000380728		224	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7574005	7574006	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ACATCTCGAAGCGCTCACGCCC			P-0024097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	67	817	2	ENST00000269305.4:c.1000_1021dup	p.Phe341TrpfsTer3	p.F341Wfs*3	ENST00000269305	NM_001126112.2	341	ttc/tGGGCGTGAGCGCTTCGAGATGTtc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151856047	151856049	+	missense_variant	Missense_Mutation	ONP	CGT	CGT	AGA			P-0024097-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	28	620	0	ENST00000262189.6:c.11569_11571delinsTCT	p.Thr3857Ser	p.T3857S	ENST00000262189	NM_170606.2	3857	ACG/TCT																																																																														
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	59	714	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38148170	38148170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023956-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	67	643	0	ENST00000317025.8:c.2941C>A	p.Pro981Thr	p.P981T	ENST00000317025	NM_023034.1	981	Ccc/Acc																																																																														
TET2	0	MSKCC	GRCh37	4	106155149	106155149	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	35	449	0	ENST00000380013.4:c.50T>G	p.Phe17Cys	p.F17C	ENST00000380013	NM_001127208.2	17	tTc/tGc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	81	481	3	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	85	599	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	62	644	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27089705	27089706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1286891446		P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	119	701	2	ENST00000324856.7:c.2666dup	p.Met890HisfsTer46	p.M890Hfs*46	ENST00000324856	NM_006015.4	887	-/G																																																																														
CDK8	0	MSKCC	GRCh37	13	26959351	26959351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	34	423	0	ENST00000381527.3:c.518A>G	p.Asp173Gly	p.D173G	ENST00000381527	NM_001260.1	173	gAc/gGc																																																																														
IGF2	0	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	69	711	1	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																																																														
NBN	0	MSKCC	GRCh37	8	90967511	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	173	449	0	ENST00000265433.3:c.1396dup	p.Arg466LysfsTer5	p.R466Kfs*5	ENST00000265433	NM_002485.4	466	agg/aAgg																																																																														
SOS1	0	MSKCC	GRCh37	2	39213242	39213243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	116	800	1	ENST00000402219.2:c.3724dup	p.Ser1242LysfsTer2	p.S1242Kfs*2	ENST00000402219	NM_005633.3	1242	agt/aAgt																																																																														
CSDE1	0	MSKCC	GRCh37	1	115263192	115263192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	112	710	0	ENST00000438362.2:c.2158C>T	p.Arg720Cys	p.R720C	ENST00000438362	NM_001242891.1	720	Cgc/Tgc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	146	836	10	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																														
BRD4	0	MSKCC	GRCh37	19	15378304	15378305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	76	704	0	ENST00000263377.2:c.481dup	p.Ile161AsnfsTer3	p.I161Nfs*3	ENST00000263377	NM_058243.2	161	ata/aAta																																																																														
KMT2C	0	MSKCC	GRCh37	7	151836816	151836816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	125	692	0	ENST00000262189.6:c.14404G>A	p.Gly4802Arg	p.G4802R	ENST00000262189	NM_170606.2	4802	Ggg/Agg																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	194	951	1	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49428410	49428411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1284500089		P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	132	774	0	ENST00000301067.7:c.10394dup	p.Pro3466ThrfsTer2	p.P3466Tfs*2	ENST00000301067	NM_003482.3	3465	gga/ggGa																																																																														
MET	0	MSKCC	GRCh37	7	116339776	116339776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	78	564	1	ENST00000397752.3:c.638C>T	p.Ser213Leu	p.S213L	ENST00000397752	NM_000245.2	213	tCg/tTg																																																																														
IRS1	0	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	54	550	0	ENST00000305123.5:c.1790_1791dup	p.His598GlyfsTer39	p.H598Gfs*39	ENST00000305123	NM_005544.2	597	-/GG																																																																														
MCL1	0	MSKCC	GRCh37	1	150551934	150551934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	96	568	0	ENST00000369026.2:c.73A>G	p.Ser25Gly	p.S25G	ENST00000369026	NM_021960.4	25	Agc/Ggc																																																																														
ELF3	0	MSKCC	GRCh37	1	201981252	201981252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	159	798	1	ENST00000359651.3:c.331C>T	p.Arg111Cys	p.R111C	ENST00000359651		111	Cgt/Tgt																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35871259	35871259	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	136	584	0	ENST00000216797.5:c.914A>G	p.Tyr305Cys	p.Y305C	ENST00000216797	NM_020529.2	305	tAt/tGt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610685	10610685	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187892356		P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	87	619	1	ENST00000171111.5:c.25G>A	p.Gly9Arg	p.G9R	ENST00000171111	NM_203500.1	9	Ggg/Agg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15299961	15299961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	131	729	1	ENST00000263388.2:c.1217G>A	p.Gly406Asp	p.G406D	ENST00000263388	NM_000435.2	406	gGc/gAc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228608	36228608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	128	868	0	ENST00000222270.7:c.7622A>G	p.Asp2541Gly	p.D2541G	ENST00000222270	NM_014727.1	2541	gAt/gGt																																																																														
INPP4B	0	MSKCC	GRCh37	4	142950047	142950047	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	40	638	0	ENST00000262992.4:c.2663A>G	p.Asn888Ser	p.N888S	ENST00000262992	NM_001101669.1	888	aAt/aGt																																																																														
PMS2	0	MSKCC	GRCh37	7	6035240	6035240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	108	628	0	ENST00000265849.7:c.828C>A	p.Cys276Ter	p.C276*	ENST00000265849	NM_000535.5	276	tgC/tgA																																																																														
AR	0	MSKCC	GRCh37	X	66943675	66943675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	125	647	0	ENST00000374690.3:c.2755A>G	p.Thr919Ala	p.T919A	ENST00000374690	NM_000044.3	919	Acc/Gcc																																																																														
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0021918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	42	128	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71949351	71949351	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	122	694	0	ENST00000298229.2:c.3731C>G	p.Pro1244Arg	p.P1244R	ENST00000298229	NM_001567.3	1244	cCg/cGg																																																																														
CYLD	0	MSKCC	GRCh37	16	50830261	50830261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	160	487	1	ENST00000398568.2:c.2704C>T	p.Gln902Ter	p.Q902*	ENST00000398568	NM_001042412.1	902	Caa/Taa																																																																														
NF1	0	MSKCC	GRCh37	17	29687562	29687562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	219	636	3	ENST00000358273.4:c.8218G>A	p.Asp2740Asn	p.D2740N	ENST00000358273	NM_001042492.2	2740	Gac/Aac																																																																														
CRLF2	0	MSKCC	GRCh37	X	1325453	1325453	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0021918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1487	229	578	0	ENST00000381566.1:c.222C>G	p.Tyr74Ter	p.Y74*	ENST00000381566		74	taC/taG																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	30	682	5	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716212	52716212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	23	650	1	ENST00000322088.6:c.656C>T	p.Ser219Leu	p.S219L	ENST00000322088	NM_014225.5	219	tCg/tTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087961	27087961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	59	748	0	ENST00000324856.7:c.2248C>T	p.Arg750Ter	p.R750*	ENST00000324856	NM_006015.4	750	Cga/Tga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	42	374	0	ENST00000274335.5:c.1126G>C	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Cga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589309	67589309	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0023989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	40	401	1	ENST00000274335.5:c.1297C>T	p.Gln433Ter	p.Q433*	ENST00000274335		433	Cag/Tag																																																																														
CD274	0	MSKCC	GRCh37	9	5462929	5462929	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146495642		P-0023989-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	20	402	1	ENST00000381577.3:c.490G>A	p.Glu164Lys	p.E164K	ENST00000381577	NM_014143.3	164	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	392	872	1	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	686	797	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
NEGR1	0	MSKCC	GRCh37	1	72241873	72241873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	103	534	0	ENST00000357731.5:c.517C>T	p.Arg173Ter	p.R173*	ENST00000357731	NM_173808.2	173	Cga/Tga																																																																														
KMT2A	0	MSKCC	GRCh37	11	118307510	118307511	+	missense_variant	Missense_Mutation	DNP	TC	TC	GT			P-0023990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	358	785	1	ENST00000534358.1:c.283_284delinsGT	p.Ser95Val	p.S95V	ENST00000534358	NM_005933.3	95	TCa/GTa																																																																														
SPRED1	0	MSKCC	GRCh37	15	38643689	38643689	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	415	882	0	ENST00000299084.4:c.1159T>A	p.Phe387Ile	p.F387I	ENST00000299084	NM_152594.2	387	Ttt/Att																																																																														
SOX9	0	MSKCC	GRCh37	17	70117803	70117803	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	175	714	0	ENST00000245479.2:c.271A>G	p.Met91Val	p.M91V	ENST00000245479	NM_000346.3	91	Atg/Gtg																																																																														
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002587-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	300	389	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057947	27057947	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002587-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	307	335	0	ENST00000324856.7:c.1655C>G	p.Ser552Ter	p.S552*	ENST00000324856	NM_006015.4	552	tCa/tGa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0002587-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	312	400	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8339022	8339022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002587-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	207	348	0	ENST00000356435.5:c.5279C>A	p.Ala1760Glu	p.A1760E	ENST00000356435		1760	gCa/gAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89720678	89720679	+	stop_gained	Nonsense_Mutation	DNP	AC	AC	TA			P-0002587-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	67	72	0	ENST00000371953.3:c.829_830delinsTA	p.Thr277Ter	p.T277*	ENST00000371953	NM_000314.4	277	ACa/TAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099974	27099975	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0002587-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	208	327	0	ENST00000324856.7:c.3854dup	p.Tyr1285Ter	p.Y1285*	ENST00000324856	NM_006015.4	1285	tat/tAat																																																																														
NPM1	0	MSKCC	GRCh37	5	170819954	170819956	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0002587-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	337	255	0	ENST00000296930.5:c.504_506del	p.Asp168del	p.D168del	ENST00000296930	NM_002520.6	166	GAT/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	218	733	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	45	735	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	162	802	5	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
RB1	0	MSKCC	GRCh37	13	49039133	49039133	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0023924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	40	305	0	ENST00000267163.4:c.2212-1G>C		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																															
EPHA3	0	MSKCC	GRCh37	3	89498433	89498433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	34	521	2	ENST00000336596.2:c.2405C>T	p.Thr802Met	p.T802M	ENST00000336596	NM_005233.5	802	aCg/aTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057904	27057904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	272	827	4	ENST00000324856.7:c.1612C>T	p.Gln538Ter	p.Q538*	ENST00000324856	NM_006015.4	538	Cag/Tag																																																																														
RET	0	MSKCC	GRCh37	10	43623569	43623569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	32	486	0	ENST00000355710.3:c.3197A>C	p.Asp1066Ala	p.D1066A	ENST00000355710	NM_020975.4	1066	gAc/gCc																																																																														
PGR	0	MSKCC	GRCh37	11	100999546	100999546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	45	973	3	ENST00000325455.5:c.256G>A	p.Ala86Thr	p.A86T	ENST00000325455	NM_001202474.3	86	Gca/Aca																																																																														
MGA	0	MSKCC	GRCh37	15	42042725	42042725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	42	604	1	ENST00000219905.7:c.6920A>G	p.Asp2307Gly	p.D2307G	ENST00000219905	NM_001164273.1	2307	gAt/gGt																																																																														
APC	0	MSKCC	GRCh37	5	112175189	112175199	+	frameshift_variant	Frame_Shift_Del	DEL	AATACCCTGCA	AATACCCTGCA	-			P-0023924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	208	328	1	ENST00000257430.4:c.3902_3912del	p.Thr1301SerfsTer10	p.T1301Sfs*10	ENST00000257430	NM_000038.5	1300	AATACCCTGCAa/a																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061224	38061237	+	protein_altering_variant	In_Frame_Del	DEL	CTCGAACATGTTGC	CTCGAACATGTTGC	ATGTT			P-0023928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	166	728	4	ENST00000250448.2:c.752_765delinsAACAT	p.Gly251_Glu255delinsGluHis	p.G251_E255delinsEH	ENST00000250448	NM_004496.3	251	gGCAACATGTTCGAG/gAACAT																																																																														
CDK12	0	MSKCC	GRCh37	17	37619285	37619286	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0023928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	171	607	0	ENST00000447079.4:c.962_963del	p.Gly321AlafsTer29	p.G321Afs*29	ENST00000447079	NM_015083.1	321	GGg/g																																																																														
CDK12	0	MSKCC	GRCh37	17	37627616	37627616	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	204	705	0	ENST00000447079.4:c.1531G>T	p.Glu511Ter	p.E511*	ENST00000447079	NM_015083.1	511	Gag/Tag																																																																														
KRAS	0	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	722	750	0	ENST00000256078.4:c.351A>C	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaC																																																																														
IKBKE	0	MSKCC	GRCh37	1	206666644	206666644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	151	822	1	ENST00000367120.3:c.1978G>A	p.Gly660Arg	p.G660R	ENST00000367120	NM_014002.3	660	Ggg/Agg																																																																														
MEF2B	0	MSKCC	GRCh37	19	19258530	19258530	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	174	859	0	ENST00000162023.5:c.370G>C	p.Ala124Pro	p.A124P	ENST00000162023		124	Gcc/Ccc																																																																														
ATR	0	MSKCC	GRCh37	3	142217556	142217556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023932-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	52	759	0	ENST00000350721.4:c.5441G>A	p.Arg1814Lys	p.R1814K	ENST00000350721	NM_001184.3	1814	aGa/aAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	126	683	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	119	732	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	98	536	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
PAK7	0	MSKCC	GRCh37	20	9546721	9546721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	62	391	0	ENST00000353224.5:c.1301C>T	p.Ala434Val	p.A434V	ENST00000353224	NM_177990.2	434	gCg/gTg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604764	48604764	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	27	575	0	ENST00000342988.3:c.1586T>G	p.Leu529Ter	p.L529*	ENST00000342988	NM_005359.5	529	tTa/tGa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096009	178096009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	61	583	0	ENST00000397062.3:c.1322T>C	p.Phe441Ser	p.F441S	ENST00000397062	NM_006164.4	441	tTc/tCc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41275120	41275120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	95	460	1	ENST00000349496.5:c.1286G>A	p.Cys429Tyr	p.C429Y	ENST00000349496	NM_001904.3	429	tGc/tAc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851674	134851675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	102	609	0	ENST00000398015.3:c.1085dup	p.Cys363ValfsTer12	p.C363Vfs*12	ENST00000398015	NM_004441.4	360	-/A																																																																														
PREX2	0	MSKCC	GRCh37	8	69103959	69103959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	48	770	0	ENST00000288368.4:c.4349C>A	p.Ala1450Glu	p.A1450E	ENST00000288368	NM_024870.2	1450	gCa/gAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1050	200	109	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098957	178098957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	110	149	0	ENST00000397062.3:c.88C>T	p.Leu30Phe	p.L30F	ENST00000397062	NM_006164.4	30	Ctt/Ttt																																																																														
FANCA	0	MSKCC	GRCh37	16	89882319	89882319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	98	98	0	ENST00000389301.3:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000389301	NM_000135.2	52	cGa/cAa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49439859	49439874	+	frameshift_variant	Frame_Shift_Del	DEL	ACCACGTAGGGCTGGC	ACCACGTAGGGCTGGC	-			P-0023986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	86	99	0	ENST00000301067.7:c.4667_4682del	p.Cys1556Ter	p.C1556*	ENST00000301067	NM_003482.3	1556	tGCCAGCCCTACGTGGTa/ta																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446061	49446062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	200	116	0	ENST00000301067.7:c.1404dup	p.Pro469ThrfsTer4	p.P469Tfs*4	ENST00000301067	NM_003482.3	468	-/A																																																																														
CD79A	0	MSKCC	GRCh37	19	42383125	42383125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	106	115	0	ENST00000221972.3:c.145G>A	p.Asp49Asn	p.D49N	ENST00000221972	NM_021601.3	49	Gac/Aac																																																																														
HGF	0	MSKCC	GRCh37	7	81358946	81358946	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023986-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	81	170	0	ENST00000222390.5:c.1015A>G	p.Met339Val	p.M339V	ENST00000222390	NM_000601.4	339	Atg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	225	715	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG																																																																														
AR	0	MSKCC	GRCh37	X	66765263	66765263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	173	501	0	ENST00000374690.3:c.275G>A	p.Gly92Asp	p.G92D	ENST00000374690	NM_000044.3	92	gGt/gAt																																																																														
PRKD1	0	MSKCC	GRCh37	14	30103654	30103654	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	46	667	0	ENST00000331968.5:c.1284G>C	p.Trp428Cys	p.W428C	ENST00000331968	NM_002742.2	428	tgG/tgC																																																																														
TSC2	0	MSKCC	GRCh37	16	2135313	2135313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	192	606	0	ENST00000219476.3:c.4652G>C	p.Gly1551Ala	p.G1551A	ENST00000219476	NM_000548.3	1551	gGa/gCa																																																																														
CTCF	0	MSKCC	GRCh37	16	67663317	67663317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	151	484	0	ENST00000264010.4:c.1718A>G	p.His573Arg	p.H573R	ENST00000264010	NM_006565.3	573	cAt/cGt																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182665410	182665410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023996-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	99	428	0	ENST00000292782.4:c.531G>A	p.Met177Ile	p.M177I	ENST00000292782	NM_020640.2	177	atG/atA																																																																														
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			63	144	490	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			91	172	399	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
MTOR	0	MSKCC	GRCh37	1	11206806	11206806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			75	143	472	0	ENST00000361445.4:c.4613G>A	p.Arg1538Gln	p.R1538Q	ENST00000361445	NM_004958.3	1538	cGg/cAg																																																																														
HIST1H3A	0	MSKCC	GRCh37	6	26020751	26020751	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			88	49	170	0	ENST00000357647.3:c.34A>G	p.Thr12Ala	p.T12A	ENST00000357647	NM_003529.2	12	Act/Gct																																																																														
WT1	0	MSKCC	GRCh37	11	32410611	32410611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			57	166	354	0	ENST00000332351.3:c.1547C>T	p.Ala516Val	p.A516V	ENST00000332351	NM_024426.4	516	gCg/gTg																																																																														
APC	0	MSKCC	GRCh37	5	112175667	112175682	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCTGAAAAGAGAGA	CTGCTGAAAAGAGAGA	AGAGT			P-0013201-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			120	25	227	2	ENST00000257430.4:c.4376_4391delinsAGAGT	p.Thr1459LysfsTer6	p.T1459Kfs*6	ENST00000257430	NM_000038.5	1459	aCTGCTGAAAAGAGAGAg/aAGAGTg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	135	318	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	293	394	1	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
RB1	0	MSKCC	GRCh37	13	49039133	49039133	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	41	129	1	ENST00000267163.4:c.2212-1G>C		p.X738_splice	ENST00000267163	NM_000321.2	738																																																																															
TP53	0	MSKCC	GRCh37	17	7579329	7579329	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	261	388	0	ENST00000269305.4:c.358A>T	p.Lys120Ter	p.K120*	ENST00000269305	NM_001126112.2	120	Aag/Tag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789597	3789597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	149	250	0	ENST00000262367.5:c.4262G>T	p.Cys1421Phe	p.C1421F	ENST00000262367	NM_004380.2	1421	tGc/tTc																																																																														
RNF43	0	MSKCC	GRCh37	17	56440919	56440919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	256	383	0	ENST00000407977.2:c.418G>C	p.Asp140His	p.D140H	ENST00000407977		140	Gac/Cac																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533686	63533686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	152	380	2	ENST00000307078.5:c.1468G>A	p.Ala490Thr	p.A490T	ENST00000307078	NM_004655.3	490	Gcg/Acg																																																																														
IL10	0	MSKCC	GRCh37	1	206943225	206943225	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	197	267	0	ENST00000423557.1:c.393del	p.Cys132ValfsTer11	p.C132Vfs*11	ENST00000423557	NM_000572.2	131	ccC/cc																																																																														
MEN1	0	MSKCC	GRCh37	11	64573220	64573220	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	259	525	0	ENST00000337652.1:c.1087G>T	p.Glu363Ter	p.E363*	ENST00000337652	NM_130803.2	363	Gag/Tag																																																																														
MGA	0	MSKCC	GRCh37	15	42041600	42041600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			30	156	413	1	ENST00000219905.7:c.5795G>T	p.Gly1932Val	p.G1932V	ENST00000219905	NM_001164273.1	1932	gGt/gTt																																																																														
SRC	0	MSKCC	GRCh37	20	36014504	36014504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	189	386	0	ENST00000358208.4:c.277T>C	p.Tyr93His	p.Y93H	ENST00000358208		93	Tat/Cat																																																																														
MAPK1	0	MSKCC	GRCh37	22	22160243	22160243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	93	220	0	ENST00000215832.6:c.388C>G	p.Leu130Val	p.L130V	ENST00000215832	NM_002745.4	130	Ctc/Gtc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55151576	55151576	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	107	369	0	ENST00000257290.5:c.2362G>C	p.Glu788Gln	p.E788Q	ENST00000257290	NM_006206.4	788	Gaa/Caa																																																																														
FAT1	0	MSKCC	GRCh37	4	187534425	187534425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			13	159	254	0	ENST00000441802.2:c.9301G>C	p.Asp3101His	p.D3101H	ENST00000441802	NM_005245.3	3101	Gat/Cat																																																																														
PNRC1	0	MSKCC	GRCh37	6	89790641	89790641	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	390	450	1	ENST00000336032.3:c.28G>C	p.Glu10Gln	p.E10Q	ENST00000336032	NM_006813.2	10	Gag/Cag																																																																														
ROS1	0	MSKCC	GRCh37	6	117681075	117681075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	91	388	0	ENST00000368508.3:c.3545G>C	p.Arg1182Thr	p.R1182T	ENST00000368508	NM_002944.2	1182	aGa/aCa																																																																														
ESR1	0	MSKCC	GRCh37	6	152163845	152163845	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	137	325	0	ENST00000206249.3:c.566A>G	p.Asn189Ser	p.N189S	ENST00000206249	NM_000125.3	189	aAt/aGt																																																																														
SMO	0	MSKCC	GRCh37	7	128851602	128851602	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	211	425	1	ENST00000249373.3:c.1927G>T	p.Ala643Ser	p.A643S	ENST00000249373	NM_005631.4	643	Gca/Tca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0023822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	31	328	0	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																																																														
CTCF	0	MSKCC	GRCh37	16	67654721	67654721	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0023822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	47	303	0	ENST00000264010.4:c.1207+1G>T		p.X403_splice	ENST00000264010	NM_006565.3	403																																																																															
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	184	395	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																																																														
INSR	0	MSKCC	GRCh37	19	7267440	7267440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	104	279	2	ENST00000302850.5:c.568G>A	p.Ala190Thr	p.A190T	ENST00000302850	NM_000208.2	190	Gcg/Acg																																																																														
BCL6	0	MSKCC	GRCh37	3	187444575	187444575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	191	377	0	ENST00000232014.4:c.1652G>A	p.Cys551Tyr	p.C551Y	ENST00000232014	NM_001130845.1	551	tGc/tAc																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15838368	15838368	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			34	101	162	0	ENST00000307771.7:c.866G>T	p.Gly289Val	p.G289V	ENST00000307771	NM_005089.3	289	gGa/gTa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786706	3786706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	82	469	0	ENST00000262367.5:c.4505G>T	p.Trp1502Leu	p.W1502L	ENST00000262367	NM_004380.2	1502	tGg/tTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	19	325	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	82	345	0	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PRDM14	0	MSKCC	GRCh37	8	70967599	70967599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	54	364	0	ENST00000276594.2:c.1424G>A	p.Ser475Asn	p.S475N	ENST00000276594	NM_024504.3	475	aGc/aAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9862709	9862709	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	43	204	0	ENST00000330684.3:c.2594G>T	p.Arg865Met	p.R865M	ENST00000330684	NM_001134407.1	865	aGg/aTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212248434	212248434	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	43	201	0	ENST00000342788.4:c.3833T>G	p.Val1278Gly	p.V1278G	ENST00000342788	NM_005235.2	1278	gTg/gGg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1953881	1953881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	17	518	0	ENST00000382891.5:c.2060G>T	p.Cys687Phe	p.C687F	ENST00000382891	NM_133335.3	687	tGc/tTc																																																																														
KDR	0	MSKCC	GRCh37	4	55955557	55955557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	21	394	0	ENST00000263923.4:c.3388T>C	p.Tyr1130His	p.Y1130H	ENST00000263923	NM_002253.2	1130	Tat/Cat																																																																														
EPHA5	0	MSKCC	GRCh37	4	66270149	66270149	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	46	239	0	ENST00000273854.3:c.1733C>G	p.Ser578Cys	p.S578C	ENST00000273854	NM_004439.5	578	tCt/tGt																																																																														
NSD1	0	MSKCC	GRCh37	5	176618982	176618982	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	41	349	0	ENST00000439151.2:c.1025G>T	p.Cys342Phe	p.C342F	ENST00000439151	NM_022455.4	342	tGt/tTt																																																																														
SOX17	0	MSKCC	GRCh37	8	55371000	55371000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	64	355	0	ENST00000297316.4:c.302T>C	p.Met101Thr	p.M101T	ENST00000297316	NM_022454.3	101	aTg/aCg																																																																														
NTHL1	0	MSKCC	GRCh37	16	2094798	2094798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	65	330	0	ENST00000219066.1:c.382C>T	p.Arg128Cys	p.R128C	ENST00000219066	NM_002528.5	128	Cgc/Tgc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348115	89348115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	104	467	0	ENST00000301030.4:c.4835G>T	p.Arg1612Met	p.R1612M	ENST00000301030	NM_001256183.1	1612	aGg/aTg																																																																														
CIC	0	MSKCC	GRCh37	19	42793085	42793086	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	88	371	1	ENST00000575354.2:c.978dup	p.Asp327ArgfsTer80	p.D327Rfs*80	ENST00000575354	NM_015125.3	326	tca/tcAa																																																																														
TEK	0	MSKCC	GRCh37	9	27206641	27206641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	110	320	0	ENST00000380036.4:c.2426A>G	p.Asn809Ser	p.N809S	ENST00000380036	NM_000459.3	809	aAc/aGc																																																																														
FANCC	0	MSKCC	GRCh37	9	97863991	97863991	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0023827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	131	265	0	ENST00000289081.3:c.1675T>C	p.Ter559GlnextTer11	p.*559Qext*11	ENST00000289081	NM_000136.2	559	Tag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			40	23	268	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160759	56160759	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0023832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			55	22	236	0	ENST00000399503.3:c.1033C>T	p.Gln345Ter	p.Q345*	ENST00000399503	NM_005921.1	345	Cag/Tag																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161199	56161201	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0023832-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			105	32	333	0	ENST00000399503.3:c.1070_1072del	p.His357del	p.H357del	ENST00000399503	NM_005921.1	356	atTCAt/att																																																																														
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	52	209	1	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																																																														
SMYD3	0	MSKCC	GRCh37	1	246078851	246078851	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61762672		P-0023836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	155	387	0	ENST00000388985.4:c.794G>A	p.Arg265His	p.R265H	ENST00000388985		265	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89685309	89685310	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0023836-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	113	296	0	ENST00000371953.3:c.205_206dup	p.Asn69LysfsTer31	p.N69Kfs*31	ENST00000371953	NM_000314.4	68	-/AA																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	113	376	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123325126	123325126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	53	471	0	ENST00000358487.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000358487	NM_000141.4	68	Gcc/Acc																																																																														
ATR	0	MSKCC	GRCh37	3	142297488	142297488	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	42	312	0	ENST00000350721.4:c.59G>A	p.Ser20Asn	p.S20N	ENST00000350721	NM_001184.3	20	aGt/aAt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0023844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	32	185	0	ENST00000274335.5:c.1727_1729delCGA	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68844109	68844110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	59	336	0	ENST00000261769.5:c.698dupA	p.His233GlnfsTer11	p.H233Qfs*11	ENST00000261769	NM_004360.3	233	cac/cAac																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	62	462	1	ENST00000250448.2:c.749C>A	p.Ser250Tyr	p.S250Y	ENST00000250448	NM_004496.3	250	tCc/tAc																																																																														
SPEN	0	MSKCC	GRCh37	1	16260809	16260809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	38	312	1	ENST00000375759.3:c.8074G>A	p.Val2692Ile	p.V2692I	ENST00000375759	NM_015001.2	2692	Gtc/Atc																																																																														
TBX3	0	MSKCC	GRCh37	12	115112540	115112932	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGACGTGGTGGTGGAGATCTTGGCCGCGTCGCAGGCCTCGGGGCCATGCTCCTCTTTGCTCTCGGCCTCGGCGTCGCTCTCACCCTCGCTGGGACATAAATCTACCACAGGCGAAGGAAAAAACCAAGGCAGAAGGGCGTTATCTCCAGTATGAGCCAACGGAACTCCAGTTCCCAAGTTGGAATCCCAGCTCGTGGCTTAGTGGCTGTGTAATCCCGGGGAAAGCCCCTTAGCCTCTCTGCACCTCAGTGTTGTCATCTGCAAAATGGGGATAATCGTGCCCAACAACATTGCTGGAAAATTCAATAAGCGATTATGAATTTAAAGTATTTACCCAGAGTTTAAACTTTCCCTTAGATGGACAATCCCCTAATCAGTAGCTCTTCTTATTTT	CGACGTGGTGGTGGAGATCTTGGCCGCGTCGCAGGCCTCGGGGCCATGCTCCTCTTTGCTCTCGGCCTCGGCGTCGCTCTCACCCTCGCTGGGACATAAATCTACCACAGGCGAAGGAAAAAACCAAGGCAGAAGGGCGTTATCTCCAGTATGAGCCAACGGAACTCCAGTTCCCAAGTTGGAATCCCAGCTCGTGGCTTAGTGGCTGTGTAATCCCGGGGAAAGCCCCTTAGCCTCTCTGCACCTCAGTGTTGTCATCTGCAAAATGGGGATAATCGTGCCCAACAACATTGCTGGAAAATTCAATAAGCGATTATGAATTTAAAGTATTTACCCAGAGTTTAAACTTTCCCTTAGATGGACAATCCCCTAATCAGTAGCTCTTCTTATTTT	-			P-0023845-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	79	482	0	ENST00000257566.3:c.1100-292_1200del		p.X367_splice	ENST00000257566	NM_016569.3	367																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	89	353	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	268	451	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	140	421	1	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
NF1	0	MSKCC	GRCh37	17	29486068	29486068	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	76	407	0	ENST00000358273.4:c.245C>G	p.Ser82Cys	p.S82C	ENST00000358273	NM_001042492.2	82	tCt/tGt																																																																														
RB1	0	MSKCC	GRCh37	13	48878177	48878300	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCGTCAGGTGAGCGAGCAGAGCCGCCGTCGCCTCACGCGGGAAGGGCGCCCCGGGTGTGCGTAGGGCGGGCGCCAAGGCGGCTCGGCGGGGATCCGTCCTCGCCAGGGGCCGGGTCCCGGCG	TCTCGTCAGGTGAGCGAGCAGAGCCGCCGTCGCCTCACGCGGGAAGGGCGCCCCGGGTGTGCGTAGGGCGGGCGCCAAGGCGGCTCGGCGGGGATCCGTCCTCGCCAGGGGCCGGGTCCCGGCG	-			P-0023853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	31	152	0	ENST00000267163.4:c.129_137+115del		p.X43_splice	ENST00000267163	NM_000321.2	43																																																																															
IDH2	0	MSKCC	GRCh37	15	90627550	90627550	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	20	419	0	ENST00000330062.3:c.1307A>G	p.Asp436Gly	p.D436G	ENST00000330062	NM_002168.2	436	gAc/gGc																																																																														
CDH1	0	MSKCC	GRCh37	16	68856077	68856077	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	165	435	0	ENST00000261769.5:c.1885G>T	p.Glu629Ter	p.E629*	ENST00000261769	NM_004360.3	629	Gaa/Taa																																																																														
CENPA	0	MSKCC	GRCh37	2	27009081	27009081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	43	151	0	ENST00000335756.4:c.17G>A	p.Arg6Gln	p.R6Q	ENST00000335756	NM_001809.3	6	cGg/cAg																																																																														
CUL3	0	MSKCC	GRCh37	2	225339045	225339045	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	147	354	0	ENST00000264414.4:c.2224A>T	p.Lys742Ter	p.K742*	ENST00000264414	NM_003590.4	742	Aag/Tag																																																																														
TAP1	0	MSKCC	GRCh37	6	32815328	32815328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023853-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	75	567	0	ENST00000354258.4:c.2045A>G	p.His682Arg	p.H682R	ENST00000354258	NM_000593.5	682	cAt/cGt																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	53	303	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913558	32913559	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1265028174		P-0023855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	30	234	0	ENST00000380152.3:c.5073dup	p.Trp1692MetfsTer3	p.W1692Mfs*3	ENST00000380152		1689	gca/gcAa																																																																														
JAK1	0	MSKCC	GRCh37	1	65313209	65313230	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTGCCAGGGAAATATCCCTG	ACTTGCCAGGGAAATATCCCTG	CCCT			P-0023855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	44	287	1	ENST00000342505.4:c.1884_1899+6delinsAGGG		p.X628_splice	ENST00000342505	NM_002227.2	628																																																																															
PTEN	0	MSKCC	GRCh37	10	89692826	89692826	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	27	102	0	ENST00000371953.3:c.310T>G	p.Phe104Val	p.F104V	ENST00000371953	NM_000314.4	104	Ttt/Gtt																																																																														
EZH1	0	MSKCC	GRCh37	17	40872320	40872320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	98	436	1	ENST00000428826.2:c.635C>T	p.Thr212Ile	p.T212I	ENST00000428826		212	aCa/aTa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71019885	71019885	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0023855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	34	153	0	ENST00000318789.4:c.1722+2T>G		p.X574_splice	ENST00000318789	NM_032682.5	574																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32188820	32188820	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	80	337	0	ENST00000375023.3:c.734A>T	p.Asn245Ile	p.N245I	ENST00000375023	NM_004557.3	245	aAt/aTt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	102	417	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	72	316	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023351	27023351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	56	266	0	ENST00000324856.7:c.459del	p.Tyr154ThrfsTer78	p.Y154Tfs*78	ENST00000324856	NM_006015.4	153	Ccc/cc																																																																														
RAD52	0	MSKCC	GRCh37	12	1025534	1025534	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	152	593	0	ENST00000358495.3:c.841A>C	p.Thr281Pro	p.T281P	ENST00000358495	NM_134424.2	281	Acg/Ccg																																																																														
SOS1	0	MSKCC	GRCh37	2	39234309	39234309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	115	424	0	ENST00000402219.2:c.2536G>A	p.Glu846Lys	p.E846K	ENST00000402219	NM_005633.3	846	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	41	229	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	37	420	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	23	484	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	139	501	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	45	211	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	159	366	1	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	47	273	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
MYOD1	0	MSKCC	GRCh37	11	17743002	17743002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	100	460	0	ENST00000250003.3:c.910G>A	p.Ala304Thr	p.A304T	ENST00000250003	NM_002478.4	304	Gcc/Acc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	70	401	5	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	111	558	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807543	1807543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	109	571	0	ENST00000260795.2:c.1712G>A	p.Arg571Gln	p.R571Q	ENST00000260795		571	cGg/cAg																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	31	484	2	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821890	72821890	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	58	345	0	ENST00000268489.5:c.10285del	p.Arg3429ValfsTer56	p.R3429Vfs*56	ENST00000268489	NM_006885.3	3429	Cgt/gt																																																																														
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	46	556	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																																																														
CASP8	0	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	83	397	0	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	21	313	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																																																														
FAT1	0	MSKCC	GRCh37	4	187540532	187540532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	19	289	0	ENST00000441802.2:c.7208C>T	p.Ala2403Val	p.A2403V	ENST00000441802	NM_005245.3	2403	gCc/gTc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	106	491	0	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																														
INSR	0	MSKCC	GRCh37	19	7267899	7267899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	34	209	0	ENST00000302850.5:c.109G>A	p.Gly37Ser	p.G37S	ENST00000302850	NM_000208.2	37	Ggc/Agc																																																																														
SPEN	0	MSKCC	GRCh37	1	16259729	16259729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	57	334	0	ENST00000375759.3:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000375759	NM_015001.2	2332	Cgc/Tgc																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774746	73774746	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	15	185	0	ENST00000254810.4:c.341A>C	p.His114Pro	p.H114P	ENST00000254810	NM_005324.3	114	cAc/cCc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	42	669	2	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
SLX4	0	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	97	708	4	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
NTRK3	0	MSKCC	GRCh37	15	88799401	88799402	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	31	172	0	ENST00000360948.2:c.-15-3dup		p.X5_splice	ENST00000360948	NM_001012338.2	5																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32163608	32163608	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	65	397	0	ENST00000375023.3:c.5618del	p.Gly1873AlafsTer12	p.G1873Afs*12	ENST00000375023	NM_004557.3	1873	gGc/gc																																																																														
IRS2	0	MSKCC	GRCh37	13	110435550	110435550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	104	389	0	ENST00000375856.3:c.2851G>A	p.Ala951Thr	p.A951T	ENST00000375856	NM_003749.2	951	Gcc/Acc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36933694	36933694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	103	660	0	ENST00000361632.4:c.1705G>A	p.Ala569Thr	p.A569T	ENST00000361632		569	Gct/Act																																																																														
ATM	0	MSKCC	GRCh37	11	108175463	108175463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	53	345	0	ENST00000278616.4:c.5558A>G	p.Asp1853Gly	p.D1853G	ENST00000278616	NM_000051.3	1853	gAt/gGt																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885187	111885187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	75	430	0	ENST00000341259.2:c.1075C>A	p.Leu359Met	p.L359M	ENST00000341259	NM_005475.2	359	Ctg/Atg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906523	32906523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	47	355	1	ENST00000380152.3:c.908C>A	p.Ser303Tyr	p.S303Y	ENST00000380152		303	tCt/tAt																																																																														
IRS2	0	MSKCC	GRCh37	13	110436101	110436101	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	38	687	0	ENST00000375856.3:c.2300T>C	p.Leu767Pro	p.L767P	ENST00000375856	NM_003749.2	767	cTc/cCc																																																																														
TSC2	0	MSKCC	GRCh37	16	2104304	2104305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	74	402	0	ENST00000219476.3:c.347dup	p.Leu116PhefsTer10	p.L116Ffs*10	ENST00000219476	NM_000548.3	115	cgt/cgTt																																																																														
TSC2	0	MSKCC	GRCh37	16	2132505	2132505	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	25	478	0	ENST00000219476.3:c.3883G>T	p.Asp1295Tyr	p.D1295Y	ENST00000219476	NM_000548.3	1295	Gac/Tac																																																																														
NF1	0	MSKCC	GRCh37	17	29653035	29653035	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	66	326	0	ENST00000358273.4:c.5033A>G	p.Tyr1678Cys	p.Y1678C	ENST00000358273	NM_001042492.2	1678	tAt/tGt																																																																														
NF1	0	MSKCC	GRCh37	17	29685515	29685515	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	66	288	0	ENST00000358273.4:c.7988C>G	p.Ser2663Cys	p.S2663C	ENST00000358273	NM_001042492.2	2663	tCt/tGt																																																																														
CDK12	0	MSKCC	GRCh37	17	37627218	37627218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	60	413	2	ENST00000447079.4:c.1133G>A	p.Arg378His	p.R378H	ENST00000447079	NM_015083.1	378	cGc/cAc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59858232	59858232	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	30	459	1	ENST00000259008.2:c.1763T>C	p.Val588Ala	p.V588A	ENST00000259008	NM_032043.2	588	gTg/gCg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223506	36223506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	106	564	0	ENST00000222270.7:c.6056G>A	p.Gly2019Asp	p.G2019D	ENST00000222270	NM_014727.1	2019	gGc/gAc																																																																														
RRAS	0	MSKCC	GRCh37	19	50140172	50140172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	30	415	0	ENST00000246792.3:c.253G>A	p.Ala85Thr	p.A85T	ENST00000246792	NM_006270.3	85	Gcg/Acg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99137164	99137164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	23	342	0	ENST00000074304.5:c.121C>A	p.Pro41Thr	p.P41T	ENST00000074304	NM_001134224.1	41	Cca/Aca																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264650	46264650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	11	210	0	ENST00000371998.3:c.1520T>C	p.Met507Thr	p.M507T	ENST00000371998		507	aTg/aCg																																																																														
EP300	0	MSKCC	GRCh37	22	41546161	41546162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	59	270	0	ENST00000263253.7:c.2780dup	p.Thr928AsnfsTer21	p.T928Nfs*21	ENST00000263253	NM_001429.3	926	acc/aCcc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160671	56160671	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	80	346	0	ENST00000399503.3:c.945A>T	p.Arg315Ser	p.R315S	ENST00000399503	NM_005921.1	315	agA/agT																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910774	29910774	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs9260139		P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	70	558	0	ENST00000376809.5:c.314T>C	p.Leu105Pro	p.L105P	ENST00000376809	NM_002116.7	105	cTg/cCg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53227955	53227955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	81	480	0	ENST00000375401.3:c.2359C>T	p.Arg787Trp	p.R787W	ENST00000375401	NM_004187.3	787	Cgg/Tgg																																																																														
MED12	0	MSKCC	GRCh37	X	70349214	70349214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	105	494	0	ENST00000374080.3:c.3626C>T	p.Ala1209Val	p.A1209V	ENST00000374080		1209	gCt/gTt																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727454	66727454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	31	496	0	ENST00000307102.5:c.170A>C	p.Lys57Thr	p.K57T	ENST00000307102	NM_002755.3	57	aAg/aCg																																																																														
CARD11	0	MSKCC	GRCh37	7	2974161	2974161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	36	685	1	ENST00000396946.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000396946	NM_032415.4	482	Gag/Aag																																																																														
STK40	0	MSKCC	GRCh37	1	36820898	36820898	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	41	670	0	ENST00000373129.3:c.479A>T	p.Gln160Leu	p.Q160L	ENST00000373129	NM_032017.1	160	cAg/cTg																																																																														
RET	0	MSKCC	GRCh37	10	43606858	43606858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	42	784	0	ENST00000355710.3:c.1467C>A	p.Asp489Glu	p.D489E	ENST00000355710	NM_020975.4	489	gaC/gaA																																																																														
ATM	0	MSKCC	GRCh37	11	108183181	108183181	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	40	472	0	ENST00000278616.4:c.5962A>T	p.Ser1988Cys	p.S1988C	ENST00000278616	NM_000051.3	1988	Agc/Tgc																																																																														
PALB2	0	MSKCC	GRCh37	16	23635355	23635355	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	51	696	0	ENST00000261584.4:c.2809G>T	p.Gly937Ter	p.G937*	ENST00000261584	NM_024675.3	937	Gga/Tga																																																																														
JAK3	0	MSKCC	GRCh37	19	17955186	17955186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	46	759	2	ENST00000458235.1:c.41G>T	p.Arg14Leu	p.R14L	ENST00000458235	NM_000215.3	14	cGt/cTt																																																																														
BARD1	0	MSKCC	GRCh37	2	215634037	215634037	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	31	484	1	ENST00000260947.4:c.1315-1G>T		p.X439_splice	ENST00000260947	NM_000465.2	439																																																																															
PTPRT	0	MSKCC	GRCh37	20	41100911	41100911	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	35	614	0	ENST00000373198.4:c.1445A>T	p.Glu482Val	p.E482V	ENST00000373198	NM_133170.3	482	gAa/gTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	95	894	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0023860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	110	731	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073851	8073852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0023860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	38	421	0	ENST00000377482.5:c.806_807dup	p.His270TyrfsTer26	p.H270Yfs*26	ENST00000377482	NM_018948.3	269	-/TA																																																																														
SPOP	0	MSKCC	GRCh37	17	47696658	47696658	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	60	810	0	ENST00000347630.2:c.290A>C	p.Glu97Ala	p.E97A	ENST00000347630	NM_001007230.1	97	gAa/gCa																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910371	29910371	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	73	996	2	ENST00000376809.5:c.41C>A	p.Ser14Ter	p.S14*	ENST00000376809	NM_002116.7	14	tCg/tAg																																																																														
BAP1	0	MSKCC	GRCh37	3	52442589	52442589	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	154	498	0	ENST00000460680.1:c.156G>A	p.Trp52Ter	p.W52*	ENST00000460680	NM_004656.3	52	tgG/tgA																																																																														
BAP1	0	MSKCC	GRCh37	3	52441466	52441528	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATCCTTTGCTCTACGGGGAAGAAAATAAGGCCGTATCAGAATAATTTCTCCTCAGGTAGGAC	TATCCTTTGCTCTACGGGGAAGAAAATAAGGCCGTATCAGAATAATTTCTCCTCAGGTAGGAC	-			P-0023863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	82	657	0	ENST00000460680.1:c.376-52_386del		p.X126_splice	ENST00000460680	NM_004656.3	126																																																																															
WHSC1L1	0	MSKCC	GRCh37	8	38186995	38186995	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	158	908	0	ENST00000317025.8:c.1482G>C	p.Lys494Asn	p.K494N	ENST00000317025	NM_023034.1	494	aaG/aaC																																																																														
CDH1	0	MSKCC	GRCh37	16	68846044	68846053	+	frameshift_variant	Frame_Shift_Del	DEL	CCTACGTATA	CCTACGTATA	-			P-0023867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	40	771	0	ENST00000261769.5:c.1017_1026del	p.Thr340TrpfsTer13	p.T340Wfs*13	ENST00000261769	NM_004360.3	339	CCTACGTATAcc/cc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	17	403	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0023872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	25	474	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481915	56481915	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	58	426	0	ENST00000267101.3:c.843G>C	p.Gln281His	p.Q281H	ENST00000267101	NM_001982.3	281	caG/caC																																																																														
RET	0	MSKCC	GRCh37	10	43597855	43597855	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	12	553	0	ENST00000355710.3:c.403G>A	p.Gly135Ser	p.G135S	ENST00000355710	NM_020975.4	135	Ggc/Agc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913676	32913677	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	23	316	0	ENST00000380152.3:c.5189dup	p.Asn1730LysfsTer13	p.N1730Kfs*13	ENST00000380152		1728	-/A																																																																														
TRAF7	0	MSKCC	GRCh37	16	2225563	2225563	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	14	447	0	ENST00000326181.6:c.1566G>C	p.Trp522Cys	p.W522C	ENST00000326181	NM_032271.2	522	tgG/tgC																																																																														
RPTOR	0	MSKCC	GRCh37	17	78857640	78857673	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCTTGCTGCGCCAGTGGGTGGCCATCTGCCTC	CCCCTTGCTGCGCCAGTGGGTGGCCATCTGCCTC	-			P-0023872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	14	458	0	ENST00000306801.3:c.1710_1743del	p.His570GlnfsTer16	p.H570Qfs*16	ENST00000306801	NM_020761.2	570	caCCCCTTGCTGCGCCAGTGGGTGGCCATCTGCCTC/ca																																																																														
WHSC1	0	MSKCC	GRCh37	4	1955153	1955153	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023872-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	14	475	0	ENST00000382891.5:c.2240A>C	p.Tyr747Ser	p.Y747S	ENST00000382891	NM_133335.3	747	tAc/tCc																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	69	416	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																																																														
CDH1	0	MSKCC	GRCh37	16	68846046	68846047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACGTATACCCTGGTGGTTCAAGCTGCTG			P-0023876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	45	465	0	ENST00000261769.5:c.1020_1047dup	p.Leu350ValfsTer9	p.L350Vfs*9	ENST00000261769	NM_004360.3	339	-/ACGTATACCCTGGTGGTTCAAGCTGCTG																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860361	151860371	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTGCTCCAT	TGCTGCTCCAT	-			P-0023876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	72	361	0	ENST00000262189.6:c.10291_10301del	p.Met3431TrpfsTer6	p.M3431Wfs*6	ENST00000262189	NM_170606.2	3431	ATGGAGCAGCAt/t																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0023881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	58	340	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	62	466	0	ENST00000269305.4:c.747G>C	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agC																																																																														
PREX2	0	MSKCC	GRCh37	8	69104607	69104607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	75	411	0	ENST00000288368.4:c.4451G>A	p.Arg1484Gln	p.R1484Q	ENST00000288368	NM_024870.2	1484	cGa/cAa																																																																														
SLX4	0	MSKCC	GRCh37	16	3646194	3646194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	79	459	0	ENST00000294008.3:c.1884G>A	p.Trp628Ter	p.W628*	ENST00000294008	NM_032444.2	628	tgG/tgA																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0023895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	27	454	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023546	27023546	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	48	442	0	ENST00000324856.7:c.653del	p.Asn218ThrfsTer14	p.N218Tfs*14	ENST00000324856	NM_006015.4	218	Aac/ac																																																																														
PARP1	0	MSKCC	GRCh37	1	226590011	226590011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	27	464	0	ENST00000366794.5:c.190A>G	p.Ile64Val	p.I64V	ENST00000366794	NM_001618.3	64	Atc/Gtc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720846	89720847	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAA			P-0023895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	15	255	0	ENST00000371953.3:c.1000_1003dup	p.Arg335GlnfsTer9	p.R335Qfs*9	ENST00000371953	NM_000314.4	333	gcc/gCCAAcc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445535	49445535	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	66	648	0	ENST00000301067.7:c.1931del	p.Met644SerfsTer286	p.M644Sfs*286	ENST00000301067	NM_003482.3	644	aTg/ag																																																																														
SLX4	0	MSKCC	GRCh37	16	3639963	3639963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	36	579	0	ENST00000294008.3:c.3676C>G	p.Arg1226Gly	p.R1226G	ENST00000294008	NM_032444.2	1226	Cgg/Ggg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778596	3778596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	41	546	0	ENST00000262367.5:c.6452G>A	p.Arg2151Gln	p.R2151Q	ENST00000262367	NM_004380.2	2151	cGg/cAg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589605	67589607	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0023895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	12	265	0	ENST00000274335.5:c.1368_1370del	p.Phe456_Gln457delinsLeu	p.F456_Q457delinsL	ENST00000274335		456	ttTCAa/tta																																																																														
ARID1B	0	MSKCC	GRCh37	6	157431611	157431611	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	79	402	1	ENST00000346085.5:c.2287C>T	p.Gln763Ter	p.Q763*	ENST00000346085	NM_020732.3	763	Cag/Tag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151900080	151900081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023895-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	20	397	0	ENST00000262189.6:c.4030dup	p.Ile1344AsnfsTer11	p.I1344Nfs*11	ENST00000262189	NM_170606.2	1344	ata/aAta																																																																														
SOX9	0	MSKCC	GRCh37	17	70120164	70120164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	20	319	0	ENST00000245479.2:c.1166C>T	p.Pro389Leu	p.P389L	ENST00000245479	NM_000346.3	389	cCg/cTg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134851765	134851765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	61	545	0	ENST00000398015.3:c.1171G>A	p.Val391Ile	p.V391I	ENST00000398015	NM_004441.4	391	Gtc/Atc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	27	288	0	ENST00000281708.4:c.1513C>A	p.Arg505Ser	p.R505S	ENST00000281708	NM_033632.3	505	Cgc/Agc																																																																														
FLCN	0	MSKCC	GRCh37	17	17118568	17118568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	49	529	1	ENST00000285071.4:c.1363G>A	p.Glu455Lys	p.E455K	ENST00000285071	NM_144997.5	455	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0023898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	80	396	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0023898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	28	440	2	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	12	302	2	ENST00000342988.3:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000342988	NM_005359.5	363	tGt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578539	7578539	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	133	621	0	ENST00000269305.4:c.391A>T	p.Asn131Tyr	p.N131Y	ENST00000269305	NM_001126112.2	131	Aac/Tac																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971015	21971049	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGC	CGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGC	-			P-0023898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	54	374	0	ENST00000304494.5:c.309_343del	p.Leu104GlyfsTer4	p.L104Gfs*4	ENST00000304494	NM_000077.4	103	cgGCTGGACGTGCGCGATGCCTGGGGCCGTCTGCCCGtg/cgtg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971015	21971049	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGC	CGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGC	-			P-0023898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	54	374	0	ENST00000304494.5:c.309_343del	p.Leu104GlyfsTer4	p.L104Gfs*4	ENST00000304494	NM_000077.4	103	cgGCTGGACGTGCGCGATGCCTGGGGCCGTCTGCCCGtg/cgtg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971015	21971049	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGC	CGGGCAGACGGCCCCAGGCATCGCGCACGTCCAGC	-			P-0023898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	54	374	0	ENST00000304494.5:c.309_343del	p.Leu104GlyfsTer4	p.L104Gfs*4	ENST00000304494	NM_000077.4	103	cgGCTGGACGTGCGCGATGCCTGGGGCCGTCTGCCCGtg/cgtg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974758	21974788	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCCGGGCCGCGGCCGTGGCCAGCCAGTCA	ACCCCGGGCCGCGGCCGTGGCCAGCCAGTCA	-			P-0023898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	31	212	0	ENST00000304494.5:c.39_69del	p.Asp14GlyfsTer2	p.D14Gfs*2	ENST00000304494	NM_000077.4	13	gcTGACTGGCTGGCCACGGCCGCGGCCCGGGGT/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0023899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	127	513	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31389095	31389095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023899-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	39	360	0	ENST00000328111.2:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000328111	NM_006892.3	670	Cgg/Tgg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	24	189	0	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515375	103515375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	25	279	0	ENST00000355739.4:c.1876T>C	p.Ser626Pro	p.S626P	ENST00000355739	NM_000123.3	626	Tct/Cct																																																																														
SETD2	0	MSKCC	GRCh37	3	47125232	47125232	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023900-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	47	390	0	ENST00000409792.3:c.6038T>G	p.Leu2013Arg	p.L2013R	ENST00000409792	NM_014159.6	2013	cTg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	267	475	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0023901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	129	436	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	63	191	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																																																														
ARID2	0	MSKCC	GRCh37	12	46245496	46245496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	49	277	0	ENST00000334344.6:c.3590C>T	p.Ala1197Val	p.A1197V	ENST00000334344	NM_152641.2	1197	gCt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578538	7578538	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	360	709	0	ENST00000269305.4:c.392delA	p.Asn131ThrfsTer39	p.N131Tfs*39	ENST00000269305	NM_001126112.2	131	aAc/ac																																																																														
MST1	0	MSKCC	GRCh37	3	49721489	49721489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023901-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	197	458	1	ENST00000449682.2:c.2150G>A	p.Trp717Ter	p.W717*	ENST00000449682	NM_020998.3	717	tGg/tAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	123	403	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	57	404	0	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577024	7577045	+	frameshift_variant	Frame_Shift_Del	DEL	TTAGTGCTCCCTGGGGGCAGCT	TTAGTGCTCCCTGGGGGCAGCT	-			P-0023906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	106	390	0	ENST00000269305.4:c.893_914del	p.Glu298GlyfsTer40	p.E298Gfs*40	ENST00000269305	NM_001126112.2	298	gAGCTGCCCCCAGGGAGCACTAAg/gg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604704	48604704	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	50	282	1	ENST00000342988.3:c.1526G>A	p.Trp509Ter	p.W509*	ENST00000342988	NM_005359.5	509	tGg/tAg																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73110202	73110204	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0023906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	37	288	0	ENST00000356692.5:c.414_416del	p.Ser139del	p.S139del	ENST00000356692		137	cCTTct/cct																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266134	41266136	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0023909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	45	209	0	ENST00000349496.5:c.133_135delTCT	p.Ser45del	p.S45del	ENST00000349496	NM_001904.3	44	cCTTct/cct																																																																														
TRAF7	0	MSKCC	GRCh37	16	2226279	2226281	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0023909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	92	414	0	ENST00000326181.6:c.1895_1897del	p.Asn632del	p.N632del	ENST00000326181	NM_032271.2	631	gACAac/gac																																																																														
GATA3	0	MSKCC	GRCh37	10	8100566	8100567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0023911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	47	511	0	ENST00000346208.3:c.542_543dup	p.Glu182LysfsTer14	p.E182Kfs*14	ENST00000346208		180	-/AA																																																																														
CDH1	0	MSKCC	GRCh37	16	68772314	68772314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	78	358	0	ENST00000261769.5:c.163G>A	p.Val55Met	p.V55M	ENST00000261769	NM_004360.3	55	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	25	455	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	39	607	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	85	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	153	394	0	ENST00000269305.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000269305	NM_001126112.2	236	Tac/Cac																																																																														
INPP4A	0	MSKCC	GRCh37	2	99172029	99172029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	51	308	0	ENST00000074304.5:c.1595T>C	p.Leu532Pro	p.L532P	ENST00000074304	NM_001134224.1	532	cTg/cCg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974676	21974677	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0023916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	75	369	0	ENST00000304494.5:c.150_150+1insT	p.Val51CysfsTer69	p.V51Cfs*69	ENST00000304494	NM_000077.4	50	-/T																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974676	21974677	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0023916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	75	369	0	ENST00000304494.5:c.150_150+1insT	p.Val51CysfsTer69	p.V51Cfs*69	ENST00000304494	NM_000077.4	50	-/T																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	56	315	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0023918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	57	409	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
SESN2	0	MSKCC	GRCh37	1	28599251	28599271	+	inframe_deletion	In_Frame_Del	DEL	CCCCCTAGTGAACAGAGCAGC	CCCCCTAGTGAACAGAGCAGC	-			P-0023918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	61	607	0	ENST00000253063.3:c.702_722del	p.Glu236_Ser242del	p.E236_S242del	ENST00000253063	NM_031459.4	233	CCCCCTAGTGAACAGAGCAGC/-																																																																														
KDM6A	0	MSKCC	GRCh37	X	44896922	44896932	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ATATGAAACCC	ATATGAAACCC	-			P-0023918-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	84	511	0	ENST00000377967.4:c.643_653del	p.Tyr215GlufsTer11	p.Y215Efs*11	ENST00000377967	NM_021140.2	214	ttATATGAAACCCag/ttag																																																																														
VHL	0	MSKCC	GRCh37	3	10191482	10191482	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	45	492	0	ENST00000256474.2:c.477delA	p.Glu160SerfsTer10	p.E160Sfs*10	ENST00000256474	NM_000551.3	159	Aaa/aa																																																																														
EPCAM	0	MSKCC	GRCh37	2	47607098	47607100	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0021909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	71	609	0	ENST00000263735.4:c.852_854delTGT	p.Val285del	p.V285del	ENST00000263735	NM_002354.2	283	aTTGtt/att																																																																														
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			980	135	830	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			742	91	688	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
STK11	0	MSKCC	GRCh37	19	1218486	1218486	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	123	751	0	ENST00000326873.7:c.361G>T	p.Glu121Ter	p.E121*	ENST00000326873	NM_000455.4	121	Gag/Tag																																																																														
RRAS2	0	MSKCC	GRCh37	11	14380412	14380412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	82	264	0	ENST00000256196.4:c.5C>T	p.Ala2Val	p.A2V	ENST00000256196		2	gCc/gTc																																																																														
RB1	0	MSKCC	GRCh37	13	49050880	49050880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			232	36	603	1	ENST00000267163.4:c.2564G>A	p.Ser855Asn	p.S855N	ENST00000267163	NM_000321.2	855	aGc/aAc																																																																														
PALB2	0	MSKCC	GRCh37	16	23637570	23637570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	80	701	0	ENST00000261584.4:c.2735G>T	p.Trp912Leu	p.W912L	ENST00000261584	NM_024675.3	912	tGg/tTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117568	70117568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			650	133	652	0	ENST00000245479.2:c.36C>A	p.Asp12Glu	p.D12E	ENST00000245479	NM_000346.3	12	gaC/gaA																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602745	10602745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			847	194	844	0	ENST00000171111.5:c.833C>T	p.Pro278Leu	p.P278L	ENST00000171111	NM_203500.1	278	cCg/cTg																																																																														
CENPA	0	MSKCC	GRCh37	2	27015081	27015081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	81	541	0	ENST00000335756.4:c.183G>T	p.Leu61Phe	p.L61F	ENST00000335756	NM_001809.3	61	ttG/ttT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530186	212530186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	34	498	1	ENST00000342788.4:c.1733C>T	p.Thr578Ile	p.T578I	ENST00000342788	NM_005235.2	578	aCa/aTa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46255889	46255889	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	35	438	2	ENST00000371998.3:c.501G>T	p.Lys167Asn	p.K167N	ENST00000371998		167	aaG/aaT																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169024	32169024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023583-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			881	94	898	0	ENST00000375023.3:c.4009G>A	p.Asp1337Asn	p.D1337N	ENST00000375023	NM_004557.3	1337	Gac/Aac																																																																														
RB1	0	MSKCC	GRCh37	13	49033844	49033844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	102	625	4	ENST00000267163.4:c.1981C>T	p.Arg661Trp	p.R661W	ENST00000267163	NM_000321.2	661	Cgg/Tgg																																																																														
GLI1	0	MSKCC	GRCh37	12	57861162	57861162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	167	683	1	ENST00000228682.2:c.959C>T	p.Thr320Met	p.T320M	ENST00000228682	NM_005269.2	320	aCg/aTg																																																																														
MSH2	0	MSKCC	GRCh37	2	47702406	47702428	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTGGTAAAAAACCTGGTTTTTG	ACTGGTAAAAAACCTGGTTTTTG	-			P-0023865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	17	347	0	ENST00000233146.2:c.2002_2005+19del		p.X668_splice	ENST00000233146	NM_000251.2	668																																																																															
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	10	385	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	16	410	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178942554	178942554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	148	521	0	ENST00000263967.3:c.2361C>G	p.Asp787Glu	p.D787E	ENST00000263967	NM_006218.2	787	gaC/gaG																																																																														
WHSC1	0	MSKCC	GRCh37	4	1906093	1906093	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	490	730	0	ENST00000382891.5:c.748A>G	p.Thr250Ala	p.T250A	ENST00000382891	NM_133335.3	250	Acc/Gcc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005423-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			341	40	347	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
GATA3	0	MSKCC	GRCh37	10	8115875	8115879	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCT	GCCCT	-			P-0005423-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			321	45	417	0	ENST00000346208.3:c.1221_1225delGCCCT	p.Pro408GlnfsTer97	p.P408Qfs*97	ENST00000346208		407	tcGCCCTtc/tctc																																																																														
PMS1	0	MSKCC	GRCh37	2	190660603	190660603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005423-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			323	26	292	0	ENST00000441310.2:c.241C>T	p.His81Tyr	p.H81Y	ENST00000441310	NM_000534.4	81	Cat/Tat																																																																														
ATR	0	MSKCC	GRCh37	3	142168411	142168411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005423-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			355	42	354	0	ENST00000350721.4:c.7795C>A	p.Leu2599Ile	p.L2599I	ENST00000350721	NM_001184.3	2599	Cta/Ata																																																																														
RICTOR	0	MSKCC	GRCh37	5	38982040	38982040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005423-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			425	40	476	0	ENST00000357387.3:c.682A>T	p.Ile228Phe	p.I228F	ENST00000357387	NM_152756.3	228	Att/Ttt																																																																														
MGA	0	MSKCC	GRCh37	15	41991118	41991118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005423-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			380	90	402	3	ENST00000219905.7:c.2071G>T	p.Ala691Ser	p.A691S	ENST00000219905	NM_001164273.1	691	Gca/Tca																																																																														
BRCA1	0	MSKCC	GRCh37	17	41276047	41276047	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	GG			P-0005423-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			399	38	478	0	ENST00000357654.3:c.67delinsCC	p.Glu23ProfsTer18	p.E23Pfs*18	ENST00000357654	NM_007294.3	23	Gag/CCag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	126	673	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913559	32913559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	110	646	4	ENST00000380152.3:c.5073del	p.Lys1691AsnfsTer15	p.K1691Nfs*15	ENST00000380152		1689	gcA/gc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	67	385	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	58	415	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	75	437	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																																																														
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	156	1231	6	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																														
TSC1	0	MSKCC	GRCh37	9	135797258	135797258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	54	369	0	ENST00000298552.3:c.611G>A	p.Arg204His	p.R204H	ENST00000298552	NM_001162426.1	204	cGt/cAt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	124	856	2	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg																																																																														
FAT1	0	MSKCC	GRCh37	4	187534473	187534473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	91	473	0	ENST00000441802.2:c.9253delC	p.Asp3086IlefsTer30	p.D3086Ifs*30	ENST00000441802	NM_005245.3	3085	Ctt/tt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	90	683	2	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32166916	32166916	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	187	1167	4	ENST00000375023.3:c.4322del	p.Pro1441LeufsTer17	p.P1441Lfs*17	ENST00000375023	NM_004557.3	1441	cCt/ct																																																																														
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	38	662	2	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074255	8074255	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	86	642	0	ENST00000377482.5:c.404delA	p.Asn135ThrfsTer40	p.N135Tfs*40	ENST00000377482	NM_018948.3	135	aAc/ac																																																																														
FGF4	0	MSKCC	GRCh37	11	69588108	69588108	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	100	741	0	ENST00000168712.1:c.590T>C	p.Met197Thr	p.M197T	ENST00000168712	NM_002007.2	197	aTg/aCg																																																																														
APC	0	MSKCC	GRCh37	5	112175880	112175880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	35	302	0	ENST00000257430.4:c.4592delA	p.Asn1531MetfsTer34	p.N1531Mfs*34	ENST00000257430	NM_000038.5	1530	gAa/ga																																																																														
ETV6	0	MSKCC	GRCh37	12	11905406	11905406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	89	530	0	ENST00000396373.4:c.56C>A	p.Pro19His	p.P19H	ENST00000396373	NM_001987.4	19	cCt/cAt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249361	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	71	618	1	ENST00000281708.4:c.1417delA	p.Arg473GlufsTer25	p.R473Efs*25	ENST00000281708	NM_033632.3	473	Aga/ga																																																																														
PMS1	0	MSKCC	GRCh37	2	190682810	190682810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	143	578	4	ENST00000441310.2:c.492delA	p.Lys164AsnfsTer6	p.K164Nfs*6	ENST00000441310	NM_000534.4	162	gcA/gc																																																																														
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	102	674	0	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																																																														
ESR1	0	MSKCC	GRCh37	6	152129421	152129421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	138	588	0	ENST00000206249.3:c.374G>A	p.Gly125Asp	p.G125D	ENST00000206249	NM_000125.3	125	gGc/gAc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176516607	176516607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	154	912	5	ENST00000292408.4:c.4C>T	p.Arg2Trp	p.R2W	ENST00000292408	NM_213647.1	2	Cgg/Tgg																																																																														
JUN	3725	MSKCC	GRCh37	1	59248285	59248285	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	22	192	0	ENST00000371222.2:c.458del	p.Gly153AlafsTer29	p.G153Afs*29	ENST00000371222	NM_002228.3	153	gGc/gc																																																																														
YAP1	0	MSKCC	GRCh37	11	101981614	101981614	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	54	412	0	ENST00000282441.5:c.40del	p.Gln14ArgfsTer60	p.Q14Rfs*60	ENST00000282441	NM_001130145.2	12	gCc/gc																																																																														
POLE	0	MSKCC	GRCh37	12	133218894	133218894	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	145	1003	2	ENST00000320574.5:c.5042A>G	p.Asn1681Ser	p.N1681S	ENST00000320574	NM_006231.2	1681	aAc/aGc																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	70	449	1	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987036	36987036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	134	748	0	ENST00000354822.5:c.653C>T	p.Ala218Val	p.A218V	ENST00000354822	NM_001079668.2	218	gCg/gTg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060881	38060881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	115	792	0	ENST00000250448.2:c.1108G>A	p.Val370Met	p.V370M	ENST00000250448	NM_004496.3	370	Gtg/Atg																																																																														
MGA	0	MSKCC	GRCh37	15	42041897	42041898	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	92	670	0	ENST00000219905.7:c.6095dup	p.Leu2032PhefsTer3	p.L2032Ffs*3	ENST00000219905	NM_001164273.1	2031	cat/caTt																																																																														
BLM	0	MSKCC	GRCh37	15	91308643	91308643	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	51	465	0	ENST00000355112.3:c.2192A>G	p.Asp731Gly	p.D731G	ENST00000355112	NM_000057.2	731	gAt/gGt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778123	3778123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	175	1164	1	ENST00000262367.5:c.6925G>T	p.Gly2309Cys	p.G2309C	ENST00000262367	NM_004380.2	2309	Ggc/Tgc																																																																														
CYLD	0	MSKCC	GRCh37	16	50783668	50783668	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	111	828	2	ENST00000398568.2:c.64del	p.Tyr22ThrfsTer25	p.Y22Tfs*25	ENST00000398568	NM_001042412.1	20	aTt/at																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822604	72822604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	92	672	0	ENST00000268489.5:c.9571G>A	p.Gly3191Ser	p.G3191S	ENST00000268489	NM_006885.3	3191	Ggc/Agc																																																																														
AURKB	0	MSKCC	GRCh37	17	8111109	8111109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	123	963	0	ENST00000585124.1:c.98C>A	p.Pro33His	p.P33H	ENST00000585124	NM_004217.3	33	cCt/cAt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37883579	37883579	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	49	812	0	ENST00000269571.5:c.3191A>G	p.Glu1064Gly	p.E1064G	ENST00000269571		1064	gAg/gGg																																																																														
SOX9	0	MSKCC	GRCh37	17	70120114	70120115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	28	177	0	ENST00000245479.2:c.1121dup	p.Gln375AlafsTer203	p.Q375Afs*203	ENST00000245479	NM_000346.3	372	-/C																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15292565	15292565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	169	1054	1	ENST00000263388.2:c.2614del	p.Ser872ProfsTer21	p.S872Pfs*21	ENST00000263388	NM_000435.2	872	Tcc/cc																																																																														
BRD4	0	MSKCC	GRCh37	19	15353876	15353876	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	152	918	0	ENST00000263377.2:c.3004A>G	p.Met1002Val	p.M1002V	ENST00000263377	NM_058243.2	1002	Atg/Gtg																																																																														
UPF1	0	MSKCC	GRCh37	19	18961008	18961008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	181	937	0	ENST00000262803.5:c.586T>C	p.Phe196Leu	p.F196L	ENST00000262803	NM_002911.3	196	Ttc/Ctc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36208929	36208935	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCG	GGCGGCG	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	10	61	0	ENST00000222270.7:c.17_23del	p.Gly6AlafsTer38	p.G6Afs*38	ENST00000222270	NM_014727.1	3	gcGGCGGCG/gc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36224387	36224387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	236	1170	0	ENST00000222270.7:c.6937G>A	p.Val2313Ile	p.V2313I	ENST00000222270	NM_014727.1	2313	Gtt/Att																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794356	242794356	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144217487		P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	104	892	3	ENST00000334409.5:c.586G>A	p.Ala196Thr	p.A196T	ENST00000334409	NM_005018.2	196	Gca/Aca																																																																														
ASXL1	0	MSKCC	GRCh37	20	30956834	30956834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	72	706	2	ENST00000375687.4:c.160G>A	p.Ala54Thr	p.A54T	ENST00000375687	NM_015338.5	54	Gca/Aca																																																																														
EP300	0	MSKCC	GRCh37	22	41566478	41566478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	40	654	2	ENST00000263253.7:c.4355C>A	p.Pro1452His	p.P1452H	ENST00000263253	NM_001429.3	1452	cCt/cAt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30648401	30648401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	40	723	0	ENST00000359013.4:c.26T>C	p.Leu9Pro	p.L9P	ENST00000359013	NM_001024847.2	9	cTg/cCg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41277224	41277224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	50	447	0	ENST00000349496.5:c.1693C>T	p.Arg565Cys	p.R565C	ENST00000349496	NM_001904.3	565	Cgc/Tgc																																																																														
SHQ1	0	MSKCC	GRCh37	3	72842190	72842190	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	71	379	0	ENST00000325599.8:c.1061-3T>C		p.X354_splice	ENST00000325599	NM_018130.2	354																																																																															
FAT1	0	MSKCC	GRCh37	4	187521091	187521091	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	96	570	0	ENST00000441802.2:c.12064T>C	p.Cys4022Arg	p.C4022R	ENST00000441802	NM_005245.3	4022	Tgc/Cgc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324019	31324020	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	90	339	0	ENST00000412585.2:c.543_544del	p.Arg181SerfsTer26	p.R181Sfs*26	ENST00000412585	NM_005514.6	181	agAGcc/agcc																																																																														
ESR1	0	MSKCC	GRCh37	6	152265509	152265509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	105	723	0	ENST00000206249.3:c.962A>G	p.Asp321Gly	p.D321G	ENST00000206249	NM_000125.3	321	gAt/gGt																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522089	157522089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	111	657	1	ENST00000346085.5:c.4361C>T	p.Ser1454Leu	p.S1454L	ENST00000346085	NM_020732.3	1454	tCg/tTg																																																																														
BCOR	0	MSKCC	GRCh37	X	39921610	39921610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	136	363	0	ENST00000378444.4:c.4210A>G	p.Ser1404Gly	p.S1404G	ENST00000378444	NM_001123385.1	1404	Agt/Ggt																																																																														
AR	0	MSKCC	GRCh37	X	66931394	66931394	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	130	438	0	ENST00000374690.3:c.2036A>G	p.Glu679Gly	p.E679G	ENST00000374690	NM_000044.3	679	gAa/gGa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	96	549	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	151	566	3	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	27	366	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	51	286	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	217	724	1	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	206	657	6	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
SOX17	0	MSKCC	GRCh37	8	55372184	55372184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	163	407	0	ENST00000297316.4:c.874G>A	p.Ala292Thr	p.A292T	ENST00000297316	NM_022454.3	292	Gcc/Acc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5220116	5220116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	170	604	0	ENST00000357368.4:c.3599G>A	p.Arg1200His	p.R1200H	ENST00000357368	NM_002850.3	1200	cGt/cAt																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111907683	111907683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146318804		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	127	448	1	ENST00000393256.3:c.457C>T	p.Arg153Trp	p.R153W	ENST00000393256	NM_006538.4	153	Cgg/Tgg																																																																														
IDH1	0	MSKCC	GRCh37	2	209116263	209116263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	76	386	2	ENST00000345146.2:c.13delA	p.Ile5SerfsTer7	p.I5Sfs*7	ENST00000345146	NM_005896.2	5	Atc/tc																																																																														
CIC	0	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	213	843	4	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																																																														
CASP8	0	MSKCC	GRCh37	2	202141587	202141587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	126	514	4	ENST00000358485.4:c.875G>A	p.Arg292Gln	p.R292Q	ENST00000358485	NM_001080125.1	292	cGg/cAg																																																																														
YAP1	0	MSKCC	GRCh37	11	102076740	102076740	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	43	585	2	ENST00000282441.5:c.919C>T	p.Arg307Ter	p.R307*	ENST00000282441	NM_001130145.2	307	Cga/Tga																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413100	139413100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	216	865	4	ENST00000277541.6:c.1042G>A	p.Ala348Thr	p.A348T	ENST00000277541	NM_017617.3	348	Gcc/Acc																																																																														
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	90	634	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	175	684	1	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157150512	157150512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	136	542	1	ENST00000346085.5:c.1694G>A	p.Arg565Gln	p.R565Q	ENST00000346085	NM_020732.3	565	cGg/cAg																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	72	234	0	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18435201	18435202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	17	292	0	ENST00000266497.5:c.192dup	p.Val65CysfsTer16	p.V65Cfs*16	ENST00000266497		62	-/T																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	203	819	2	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	135	736	14	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
FANCA	0	MSKCC	GRCh37	16	89836386	89836386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	32	634	0	ENST00000389301.3:c.2363C>T	p.Ala788Val	p.A788V	ENST00000389301	NM_000135.2	788	gCc/gTc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980559	1980559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs755520256		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	207	730	3	ENST00000382891.5:c.4028del	p.Pro1343GlnfsTer49	p.P1343Qfs*49	ENST00000382891	NM_133335.3	1341	Ccc/cc																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	204	690	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs763183959		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	59	914	1	ENST00000222270.7:c.521dup	p.Thr176AspfsTer8	p.T176Dfs*8	ENST00000222270	NM_014727.1	172	acc/aCcc																																																																														
TERT	0	MSKCC	GRCh37	5	1294470	1294470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	103	618	0	ENST00000310581.5:c.531G>C	p.Gln177His	p.Q177H	ENST00000310581	NM_198253.2	177	caG/caC																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519504	137519505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	175	382	5	ENST00000367739.4:c.1132_1133dupAG	p.Ser378ArgfsTer6	p.S378Rfs*6	ENST00000367739	NM_000416.2	378	agt/agAGt																																																																														
RXRA	0	MSKCC	GRCh37	9	137309069	137309069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	54	1055	2	ENST00000481739.1:c.676G>A	p.Ala226Thr	p.A226T	ENST00000481739	NM_002957.4	226	Gcc/Acc																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2492062	2492062	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	167	739	0	ENST00000355716.4:c.461-1G>T		p.X154_splice	ENST00000355716	NM_003820.2	154																																																																															
ARID1A	0	MSKCC	GRCh37	1	27023819	27023819	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	180	452	0	ENST00000324856.7:c.925C>T	p.Gln309Ter	p.Q309*	ENST00000324856	NM_006015.4	309	Cag/Tag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120466317	120466317	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	39	579	0	ENST00000256646.2:c.4802A>C	p.Lys1601Thr	p.K1601T	ENST00000256646	NM_024408.3	1601	aAg/aCg																																																																														
YAP1	0	MSKCC	GRCh37	11	102098259	102098259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	69	621	0	ENST00000282441.5:c.1223G>A	p.Ser408Asn	p.S408N	ENST00000282441	NM_001130145.2	408	aGt/aAt																																																																														
GLI1	0	MSKCC	GRCh37	12	57864125	57864125	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	216	702	0	ENST00000228682.2:c.1607del	p.Pro536GlnfsTer77	p.P536Qfs*77	ENST00000228682	NM_005269.2	534	ggC/gg																																																																														
SPRED1	0	MSKCC	GRCh37	15	38591665	38591665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147204964		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	186	596	1	ENST00000299084.4:c.124G>A	p.Val42Ile	p.V42I	ENST00000299084	NM_152594.2	42	Gtc/Atc																																																																														
PDPK1	0	MSKCC	GRCh37	16	2647662	2647662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	175	614	1	ENST00000342085.4:c.1565C>T	p.Thr522Met	p.T522M	ENST00000342085	NM_002613.4	522	aCg/aTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807811	3807811	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	96	391	0	ENST00000262367.5:c.3608A>G	p.Lys1203Arg	p.K1203R	ENST00000262367	NM_004380.2	1203	aAg/aGg																																																																														
SPOP	0	MSKCC	GRCh37	17	47700132	47700132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	170	526	1	ENST00000347630.2:c.41C>T	p.Ser14Leu	p.S14L	ENST00000347630	NM_001007230.1	14	tCg/tTg																																																																														
RNF43	0	MSKCC	GRCh37	17	56435981	56435981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	92	363	1	ENST00000407977.2:c.1156C>T	p.Arg386Trp	p.R386W	ENST00000407977		386	Cgg/Tgg																																																																														
SOX9	0	MSKCC	GRCh37	17	70120507	70120508	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	324	974	0	ENST00000245479.2:c.1510dup	p.Thr504AsnfsTer74	p.T504Nfs*74	ENST00000245479	NM_000346.3	503	-/A																																																																														
TCF3	0	MSKCC	GRCh37	19	1612347	1612347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200962332		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	423	878	1	ENST00000344749.5:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000344749	NM_001136139.2	558	Cgc/Tgc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5210490	5210490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	102	643	0	ENST00000357368.4:c.5477C>T	p.Thr1826Ile	p.T1826I	ENST00000357368	NM_002850.3	1826	aCa/aTa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36220916	36220916	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	87	375	0	ENST00000222270.7:c.4966del	p.Ser1656ProfsTer40	p.S1656Pfs*40	ENST00000222270	NM_014727.1	1656	Tcc/cc																																																																														
ERF	2077	MSKCC	GRCh37	19	42753149	42753151	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-	rs199960550		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	153	608	6	ENST00000222329.4:c.1113_1115del	p.Ser373del	p.S373del	ENST00000222329	NM_006494.2	371	tcTTCc/tcc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45860949	45860951	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	216	804	0	ENST00000391945.4:c.1244_1246del	p.Thr415del	p.T415del	ENST00000391945	NM_000400.3	415	aCCAtc/atc																																																																														
SOS1	0	MSKCC	GRCh37	2	39222519	39222520	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	117	575	0	ENST00000402219.2:c.3090dup	p.Tyr1031IlefsTer2	p.Y1031Ifs*2	ENST00000402219	NM_005633.3	1030	-/A																																																																														
IRS1	0	MSKCC	GRCh37	2	227662935	227662935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	205	785	0	ENST00000305123.5:c.520G>T	p.Gly174Cys	p.G174C	ENST00000305123	NM_005544.2	174	Ggt/Tgt																																																																														
RTEL1	0	MSKCC	GRCh37	20	62321727	62321729	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	151	682	0	ENST00000508582.2:c.2423_2425del	p.Phe808del	p.F808del	ENST00000508582		806	ccCTTc/ccc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121088	29121088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	160	820	0	ENST00000328354.6:c.469A>G	p.Ile157Val	p.I157V	ENST00000328354	NM_007194.3	157	Att/Gtt																																																																														
EP300	0	MSKCC	GRCh37	22	41527461	41527461	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs140538515		P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	34	738	0	ENST00000263253.7:c.1352C>A	p.Pro451His	p.P451H	ENST00000263253	NM_001429.3	451	cCc/cAc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52582176	52582176	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	140	422	0	ENST00000394830.3:c.4652C>G	p.Ala1551Gly	p.A1551G	ENST00000394830	NM_018313.4	1551	gCc/gGc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1956908	1956908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	253	940	0	ENST00000382891.5:c.2359C>T	p.Arg787Cys	p.R787C	ENST00000382891	NM_133335.3	787	Cgc/Tgc																																																																														
KIT	0	MSKCC	GRCh37	4	55564725	55564725	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	124	482	0	ENST00000288135.5:c.613A>T	p.Arg205Trp	p.R205W	ENST00000288135	NM_000222.2	205	Agg/Tgg																																																																														
MSH3	0	MSKCC	GRCh37	5	80064779	80064780	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	70	543	0	ENST00000265081.6:c.2216dup	p.Asn739LysfsTer29	p.N739Kfs*29	ENST00000265081	NM_002439.4	737	cta/ctAa																																																																														
RAD50	0	MSKCC	GRCh37	5	131977952	131977952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	85	510	0	ENST00000265335.6:c.3835C>T	p.Arg1279Cys	p.R1279C	ENST00000265335		1279	Cgt/Tgt																																																																														
CSF1R	0	MSKCC	GRCh37	5	149440424	149440424	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	106	598	0	ENST00000286301.3:c.1969+1G>A		p.X657_splice	ENST00000286301	NM_005211.3	657																																																																															
HLA-A	0	MSKCC	GRCh37	6	29911108	29911108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	153	956	0	ENST00000376809.5:c.407G>A	p.Gly136Glu	p.G136E	ENST00000376809	NM_002116.7	136	gGg/gAg																																																																														
ESR1	0	MSKCC	GRCh37	6	152420068	152420068	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	48	437	0	ENST00000206249.3:c.1759delG	p.Glu587ArgfsTer20	p.E587Rfs*20	ENST00000206249	NM_000125.3	585	acG/ac																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522556	157522556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	147	769	1	ENST00000346085.5:c.4828C>A	p.Pro1610Thr	p.P1610T	ENST00000346085	NM_020732.3	1610	Cct/Act																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38133227	38133227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	257	793	2	ENST00000317025.8:c.4246C>T	p.Pro1416Ser	p.P1416S	ENST00000317025	NM_023034.1	1416	Cca/Tca																																																																														
FGFR1	0	MSKCC	GRCh37	8	38272115	38272115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	45	753	0	ENST00000425967.3:c.2103G>T	p.Glu701Asp	p.E701D	ENST00000425967	NM_001174067.1	701	gaG/gaT																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900296	101900296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	79	504	1	ENST00000374994.4:c.730C>T	p.Arg244Cys	p.R244C	ENST00000374994	NM_004612.2	244	Cgt/Tgt																																																																														
BCOR	0	MSKCC	GRCh37	X	39934222	39934222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	256	834	4	ENST00000378444.4:c.377C>T	p.Pro126Leu	p.P126L	ENST00000378444	NM_001123385.1	126	cCg/cTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11259681	11259681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	174	834	2	ENST00000361445.4:c.4024G>A	p.Glu1342Lys	p.E1342K	ENST00000361445	NM_004958.3	1342	Gag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16257770	16257770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	148	706	3	ENST00000375759.3:c.5035G>A	p.Val1679Ile	p.V1679I	ENST00000375759	NM_015001.2	1679	Gtc/Atc																																																																														
SPEN	0	MSKCC	GRCh37	1	16260837	16260837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	236	740	0	ENST00000375759.3:c.8102C>T	p.Thr2701Met	p.T2701M	ENST00000375759	NM_015001.2	2701	aCg/aTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023021	27023021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	39	133	0	ENST00000324856.7:c.127G>A	p.Ala43Thr	p.A43T	ENST00000324856	NM_006015.4	43	Gca/Aca																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27097751	27097751	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	176	829	1	ENST00000324856.7:c.3344del	p.Pro1115GlnfsTer46	p.P1115Qfs*46	ENST00000324856	NM_006015.4	1114	Ccc/cc																																																																														
NUF2	0	MSKCC	GRCh37	1	163297333	163297333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	91	914	3	ENST00000271452.3:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000271452	NM_145697.2	60	cGa/cAa																																																																														
CDC73	0	MSKCC	GRCh37	1	193117069	193117069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	59	681	4	ENST00000367435.3:c.802C>T	p.Arg268Ter	p.R268*	ENST00000367435	NM_024529.4	268	Cga/Tga																																																																														
PARP1	0	MSKCC	GRCh37	1	226567719	226567719	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	35	725	1	ENST00000366794.5:c.1447delG	p.Ala483GlnfsTer3	p.A483Qfs*3	ENST00000366794	NM_001618.3	483	Gca/ca																																																																														
PARP1	0	MSKCC	GRCh37	1	226568823	226568823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	195	961	0	ENST00000366794.5:c.1246G>A	p.Gly416Arg	p.G416R	ENST00000366794	NM_001618.3	416	Ggg/Agg																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	79	469	5	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																														
WT1	0	MSKCC	GRCh37	11	32450167	32450167	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	147	718	0	ENST00000332351.3:c.647-2A>G		p.X216_splice	ENST00000332351	NM_024426.4	216																																																																															
BIRC3	0	MSKCC	GRCh37	11	102195382	102195382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	128	599	0	ENST00000263464.3:c.142A>G	p.Arg48Gly	p.R48G	ENST00000263464	NM_001165.4	48	Agg/Ggg																																																																														
CHEK1	0	MSKCC	GRCh37	11	125514480	125514480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	85	679	1	ENST00000428830.2:c.1175G>A	p.Cys392Tyr	p.C392Y	ENST00000428830	NM_001114121.2	392	tGc/tAc																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	139	718	20	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	88	874	1	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49418606	49418606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	223	763	2	ENST00000301067.7:c.15908G>A	p.Arg5303His	p.R5303H	ENST00000301067	NM_003482.3	5303	cGc/cAc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	212	969	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489535	56489535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	176	839	0	ENST00000267101.3:c.2000G>A	p.Arg667His	p.R667H	ENST00000267101	NM_001982.3	667	cGt/cAt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489582	56489582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56387488		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	134	736	0	ENST00000267101.3:c.2047C>T	p.Arg683Trp	p.R683W	ENST00000267101	NM_001982.3	683	Cgg/Tgg																																																																														
GLI1	0	MSKCC	GRCh37	12	57860150	57860150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	46	868	3	ENST00000228682.2:c.890G>A	p.Gly297Asp	p.G297D	ENST00000228682	NM_005269.2	297	gGc/gAc																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	200	863	13	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
LATS2	0	MSKCC	GRCh37	13	21562802	21562802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	146	805	0	ENST00000382592.4:c.1117G>A	p.Ala373Thr	p.A373T	ENST00000382592	NM_014572.2	373	Gcc/Acc																																																																														
FLT1	0	MSKCC	GRCh37	13	28891686	28891686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143726778		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	179	892	0	ENST00000282397.4:c.3335G>A	p.Arg1112His	p.R1112H	ENST00000282397	NM_002019.4	1112	cGc/cAc																																																																														
FLT1	0	MSKCC	GRCh37	13	29012359	29012359	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	93	703	0	ENST00000282397.4:c.512del	p.Lys171SerfsTer7	p.K171Sfs*7	ENST00000282397	NM_002019.4	171	aAg/ag																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986940	36986940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	44	801	3	ENST00000354822.5:c.749C>T	p.Ala250Val	p.A250V	ENST00000354822	NM_001079668.2	250	gCc/gTc																																																																														
TSHR	0	MSKCC	GRCh37	14	81422161	81422161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	158	709	3	ENST00000298171.2:c.137G>A	p.Arg46His	p.R46H	ENST00000298171	NM_000369.2	46	cGc/cAc																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	335	720	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473780	67473780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	34	729	0	ENST00000327367.4:c.860G>A	p.Arg287Gln	p.R287Q	ENST00000327367	NM_005902.3	287	cGg/cAg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99442709	99442709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	45	740	0	ENST00000268035.6:c.1106A>G	p.Asn369Ser	p.N369S	ENST00000268035	NM_000875.3	369	aAc/aGc																																																																														
AXIN1	0	MSKCC	GRCh37	16	347982	347983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	190	993	0	ENST00000262320.3:c.1523dup	p.Ala509CysfsTer82	p.A509Cfs*82	ENST00000262320	NM_003502.3	508	ggt/ggGt																																																																														
AXIN1	8312	MSKCC	GRCh37	16	396234	396234	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	161	901	0	ENST00000262320.3:c.792del	p.Gly265GlufsTer149	p.G265Efs*149	ENST00000262320	NM_003502.3	264	ccC/cc																																																																														
SLX4	0	MSKCC	GRCh37	16	3640538	3640538	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150453226		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	234	930	5	ENST00000294008.3:c.3101G>A	p.Arg1034His	p.R1034H	ENST00000294008	NM_032444.2	1034	cGc/cAc																																																																														
MAPK3	0	MSKCC	GRCh37	16	30133311	30133311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200617125		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	227	764	0	ENST00000263025.4:c.187G>A	p.Val63Met	p.V63M	ENST00000263025	NM_002746.2	63	Gtg/Atg																																																																														
CTCF	0	MSKCC	GRCh37	16	67645104	67645105	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	156	1000	2	ENST00000264010.4:c.370_371del	p.Val124ThrfsTer15	p.V124Tfs*15	ENST00000264010	NM_006565.3	123	acTGta/acta																																																																														
PLCG2	0	MSKCC	GRCh37	16	81965144	81965144	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	171	831	0	ENST00000359376.3:c.2624T>C	p.Ile875Thr	p.I875T	ENST00000359376	NM_002661.3	875	aTc/aCc																																																																														
FANCA	0	MSKCC	GRCh37	16	89805103	89805103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147406377		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	194	652	1	ENST00000389301.3:c.4274G>A	p.Arg1425His	p.R1425H	ENST00000389301	NM_000135.2	1425	cGt/cAt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16024480	16024480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	188	610	0	ENST00000268712.3:c.1738C>T	p.Arg580Cys	p.R580C	ENST00000268712	NM_006311.3	580	Cgc/Tgc																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	214	891	7	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879810	37879810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	143	582	2	ENST00000269571.5:c.2105C>T	p.Pro702Leu	p.P702L	ENST00000269571		702	cCt/cTt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	149	630	2	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	278	1096	13	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	371	786	10	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
CD79B	0	MSKCC	GRCh37	17	62007451	62007451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	164	703	0	ENST00000392795.3:c.416C>T	p.Thr139Ile	p.T139I	ENST00000392795	NM_001039933.1	139	aCa/aTa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604782	48604782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	280	696	1	ENST00000342988.3:c.1604T>C	p.Leu535Pro	p.L535P	ENST00000342988	NM_005359.5	535	cTc/cCc																																																																														
STK11	0	MSKCC	GRCh37	19	1226617	1226617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	188	642	4	ENST00000326873.7:c.1273C>T	p.Arg425Cys	p.R425C	ENST00000326873	NM_000455.4	425	Cgc/Tgc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226274	2226274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	238	1009	5	ENST00000398665.3:c.3754G>A	p.Gly1252Ser	p.G1252S	ENST00000398665	NM_032482.2	1252	Ggc/Agc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5211674	5211674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	255	955	3	ENST00000357368.4:c.5161C>T	p.Arg1721Trp	p.R1721W	ENST00000357368	NM_002850.3	1721	Cgg/Tgg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10247835	10247835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	213	1005	1	ENST00000340748.4:c.4367G>T	p.Arg1456Leu	p.R1456L	ENST00000340748		1456	cGg/cTg																																																																														
DNMT1	0	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	288	1073	9	ENST00000340748.4:c.2152delA	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599874	10599874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	292	894	3	ENST00000171111.5:c.1702G>A	p.Val568Ile	p.V568I	ENST00000171111	NM_203500.1	568	Gtc/Atc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11152139	11152139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	239	870	4	ENST00000344626.4:c.4327C>T	p.Arg1443Cys	p.R1443C	ENST00000344626	NM_003072.3	1443	Cgc/Tgc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276714	15276714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	206	866	3	ENST00000263388.2:c.5551C>T	p.Arg1851Cys	p.R1851C	ENST00000263388	NM_000435.2	1851	Cgt/Tgt																																																																														
BRD4	0	MSKCC	GRCh37	19	15354232	15354232	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	347	1042	0	ENST00000263377.2:c.2648A>T	p.Lys883Met	p.K883M	ENST00000263377	NM_058243.2	883	aAg/aTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214639	36214639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	267	912	1	ENST00000222270.7:c.3065C>T	p.Thr1022Met	p.T1022M	ENST00000222270	NM_014727.1	1022	aCg/aTg																																																																														
AKT2	0	MSKCC	GRCh37	19	40743886	40743886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	259	810	0	ENST00000392038.2:c.821G>A	p.Arg274His	p.R274H	ENST00000392038	NM_001626.4	274	cGc/cAc																																																																														
AXL	0	MSKCC	GRCh37	19	41765712	41765712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	271	836	7	ENST00000301178.4:c.2588C>T	p.Ala863Val	p.A863V	ENST00000301178	NM_021913.4	863	gCt/gTt																																																																														
POLD1	0	MSKCC	GRCh37	19	50902191	50902191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	156	965	1	ENST00000440232.2:c.83C>T	p.Ala28Val	p.A28V	ENST00000440232	NM_002691.3	28	gCa/gTa																																																																														
POLD1	0	MSKCC	GRCh37	19	50906786	50906786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	64	1003	2	ENST00000440232.2:c.1174G>A	p.Val392Met	p.V392M	ENST00000440232	NM_002691.3	392	Gtg/Atg																																																																														
ALK	0	MSKCC	GRCh37	2	29462683	29462683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	201	862	0	ENST00000389048.3:c.2218G>A	p.Gly740Arg	p.G740R	ENST00000389048	NM_004304.4	740	Gga/Aga																																																																														
MSH2	0	MSKCC	GRCh37	2	47702265	47702265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	228	929	1	ENST00000233146.2:c.1861C>T	p.Arg621Ter	p.R621*	ENST00000233146	NM_000251.2	621	Cga/Tga																																																																														
MSH6	0	MSKCC	GRCh37	2	48030692	48030692	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	64	702	5	ENST00000234420.5:c.3312delT	p.Phe1104LeufsTer11	p.F1104Lfs*11	ENST00000234420	NM_000179.2	1102	acT/ac																																																																														
INPP4A	0	MSKCC	GRCh37	2	99182192	99182192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	201	805	0	ENST00000074304.5:c.2257G>A	p.Ala753Thr	p.A753T	ENST00000074304	NM_001134224.1	753	Gcc/Acc																																																																														
ERCC3	0	MSKCC	GRCh37	2	128017009	128017009	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151216904		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	232	844	1	ENST00000285398.2:c.2080G>A	p.Ala694Thr	p.A694T	ENST00000285398	NM_000122.1	694	Gct/Act																																																																														
CASP8	0	MSKCC	GRCh37	2	202141631	202141631	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	86	705	0	ENST00000358485.4:c.919del	p.Arg307GlyfsTer23	p.R307Gfs*23	ENST00000358485	NM_001080125.1	307	Cgg/gg																																																																														
ERG	0	MSKCC	GRCh37	21	39764347	39764347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	209	802	1	ENST00000288319.7:c.765del	p.Arg256GlyfsTer35	p.R256Gfs*35	ENST00000288319	NM_182918.3	255	ccC/cc																																																																														
SETD2	0	MSKCC	GRCh37	3	47165615	47165615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	149	755	2	ENST00000409792.3:c.511G>T	p.Ala171Ser	p.A171S	ENST00000409792	NM_014159.6	171	Gca/Tca																																																																														
MST1	0	MSKCC	GRCh37	3	49722906	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	60	215	0	ENST00000449682.2:c.1421del	p.Pro474GlnfsTer52	p.P474Qfs*52	ENST00000449682	NM_020998.3	474	cCa/ca																																																																														
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	230	933	9	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																																																														
BAP1	0	MSKCC	GRCh37	3	52443613	52443613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	358	738	0	ENST00000460680.1:c.79delG	p.Val27CysfsTer45	p.V27Cfs*45	ENST00000460680	NM_004656.3	27	Gtg/tg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920337	134920337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141607080		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	129	638	1	ENST00000398015.3:c.2152G>A	p.Val718Met	p.V718M	ENST00000398015	NM_004441.4	718	Gtg/Atg																																																																														
SOX2	0	MSKCC	GRCh37	3	181430201	181430202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	59	396	0	ENST00000325404.1:c.59dup	p.Gly21ArgfsTer75	p.G21Rfs*75	ENST00000325404	NM_003106.3	18	tcg/tcGg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185155411	185155411	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140970208		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	82	533	0	ENST00000265026.3:c.652G>A	p.Ala218Thr	p.A218T	ENST00000265026	NM_004721.4	218	Gca/Aca																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185198259	185198259	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200441685		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	418	778	2	ENST00000265026.3:c.2741G>A	p.Arg914His	p.R914H	ENST00000265026	NM_004721.4	914	cGc/cAc																																																																														
KDR	0	MSKCC	GRCh37	4	55968156	55968156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	180	786	2	ENST00000263923.4:c.2174G>A	p.Arg725His	p.R725H	ENST00000263923	NM_002253.2	725	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	163	881	4	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
FAT1	0	MSKCC	GRCh37	4	187542693	187542694	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	76	761	1	ENST00000441802.2:c.5046dup	p.Gly1683TrpfsTer11	p.G1683Wfs*11	ENST00000441802	NM_005245.3	1682	-/T																																																																														
DROSHA	0	MSKCC	GRCh37	5	31493373	31493373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	18	730	1	ENST00000344624.3:c.1783G>A	p.Asp595Asn	p.D595N	ENST00000344624		595	Gat/Aat																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526679	31526679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	197	994	2	ENST00000344624.3:c.361C>T	p.Pro121Ser	p.P121S	ENST00000344624		121	Cca/Tca																																																																														
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	66	564	4	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	131	1020	11	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
APC	0	MSKCC	GRCh37	5	112179389	112179389	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	114	700	0	ENST00000257430.4:c.8098A>G	p.Asn2700Asp	p.N2700D	ENST00000257430	NM_000038.5	2700	Aat/Gat																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120318	94120318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41273629		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	109	433	0	ENST00000369303.4:c.733G>A	p.Ala245Thr	p.A245T	ENST00000369303	NM_004440.3	245	Gcc/Acc																																																																														
FYN	0	MSKCC	GRCh37	6	112017495	112017495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	174	531	1	ENST00000368678.4:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000368678		340	Gag/Aag																																																																														
ARID1B	0	MSKCC	GRCh37	6	157502151	157502151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	200	577	5	ENST00000346085.5:c.3184G>A	p.Glu1062Lys	p.E1062K	ENST00000346085	NM_020732.3	1062	Gag/Aag																																																																														
SMO	0	MSKCC	GRCh37	7	128829282	128829282	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	252	849	0	ENST00000249373.3:c.290A>G	p.Asp97Gly	p.D97G	ENST00000249373	NM_005631.4	97	gAc/gGc																																																																														
EZH2	0	MSKCC	GRCh37	7	148515136	148515136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	158	661	1	ENST00000320356.2:c.1073G>A	p.Arg358His	p.R358H	ENST00000320356	NM_004456.4	358	cGc/cAc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874147	151874148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	179	1009	15	ENST00000262189.6:c.8390dup	p.Glu2798GlyfsTer11	p.E2798Gfs*11	ENST00000262189	NM_170606.2	2797	aag/aaAg																																																																														
AGO2	0	MSKCC	GRCh37	8	141561429	141561430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	486	656	2	ENST00000220592.5:c.1375dup	p.Gln459ProfsTer215	p.Q459Pfs*215	ENST00000220592	NM_012154.3	459	cag/cCag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8340407	8340407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201651279		P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	142	819	1	ENST00000356435.5:c.5189G>A	p.Arg1730Gln	p.R1730Q	ENST00000356435		1730	cGg/cAg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	44	695	2	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
KLF4	0	MSKCC	GRCh37	9	110250478	110250478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	126	672	3	ENST00000374672.4:c.197C>T	p.Ala66Val	p.A66V	ENST00000374672	NM_004235.4	66	gCg/gTg																																																																														
RXRA	0	MSKCC	GRCh37	9	137309117	137309117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	295	1068	2	ENST00000481739.1:c.724G>A	p.Val242Met	p.V242M	ENST00000481739	NM_002957.4	242	Gtg/Atg																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15838386	15838386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	132	363	2	ENST00000307771.7:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000307771	NM_005089.3	295	cGa/cAa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949141	44949143	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	89	416	0	ENST00000377967.4:c.3707_3709del	p.Asn1236del	p.N1236del	ENST00000377967	NM_021140.2	1234	tgCAAc/tgc																																																																														
GATA1	2623	MSKCC	GRCh37	X	48652397	48652397	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	190	478	0	ENST00000376670.3:c.1073del	p.Pro358GlnfsTer74	p.P358Qfs*74	ENST00000376670	NM_002049.3	356	ggC/gg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	151	513	0	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0021304-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	50	582	0	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	68	532	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	168	508	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	95	574	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	58	386	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	100	751	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
MDM4	0	MSKCC	GRCh37	1	204518437	204518437	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201947927		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	109	581	0	ENST00000367182.3:c.1100C>T	p.Ser367Leu	p.S367L	ENST00000367182	NM_001278516.1	367	tCg/tTg																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	204	652	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
BCL2L11	0	MSKCC	GRCh37	2	111921764	111921764	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	115	732	0	ENST00000393256.3:c.553C>T	p.Arg185Ter	p.R185*	ENST00000393256	NM_006538.4	185	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	155	1065	1	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257366	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	143	1006	2	ENST00000162023.5:c.767delC	p.Pro256GlnfsTer?	p.P256Qfs*?	ENST00000162023		256	cCa/ca																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	175	1153	4	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																																																														
DAXX	0	MSKCC	GRCh37	6	33288323	33288323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	174	687	1	ENST00000374542.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000374542	NM_001141970.1	362	cGg/cAg																																																																														
TERT	0	MSKCC	GRCh37	5	1294283	1294283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	122	1062	3	ENST00000310581.5:c.718C>T	p.Arg240Cys	p.R240C	ENST00000310581	NM_198253.2	240	Cgt/Tgt																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780235	9780235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	193	1084	3	ENST00000377346.4:c.1405G>A	p.Ala469Thr	p.A469T	ENST00000377346	NM_005026.3	469	Gct/Act																																																																														
PTPRS	0	MSKCC	GRCh37	19	5221081	5221081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199805837		P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	156	868	3	ENST00000357368.4:c.3385G>A	p.Ala1129Thr	p.A1129T	ENST00000357368	NM_002850.3	1129	Gcc/Acc																																																																														
HLA-B	3106	MSKCC	GRCh37	6	31323363	31323363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	89	715	1	ENST00000412585.2:c.626del	p.Pro209GlnfsTer5	p.P209Qfs*5	ENST00000412585	NM_005514.6	209	cCa/ca																																																																														
ERG	0	MSKCC	GRCh37	21	39755553	39755554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	63	667	0	ENST00000288319.7:c.1211dupC	p.Glu405GlyfsTer61	p.E405Gfs*61	ENST00000288319	NM_182918.3	404	ccg/ccCg																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324917	31324917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	208	931	0	ENST00000412585.2:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000412585	NM_005514.6	7	Cga/ga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438018	49438018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	167	1076	2	ENST00000301067.7:c.5153C>T	p.Ala1718Val	p.A1718V	ENST00000301067	NM_003482.3	1718	gCg/gTg																																																																														
ELF3	0	MSKCC	GRCh37	1	201983029	201983029	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	219	1253	0	ENST00000359651.3:c.878T>G	p.Met293Arg	p.M293R	ENST00000359651		293	aTg/aGg																																																																														
PARP1	0	MSKCC	GRCh37	1	226552719	226552719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	91	549	0	ENST00000366794.5:c.2642C>T	p.Pro881Leu	p.P881L	ENST00000366794	NM_001618.3	881	cCg/cTg																																																																														
RB1	0	MSKCC	GRCh37	13	49033923	49033923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	117	787	0	ENST00000267163.4:c.2060C>T	p.Thr687Ile	p.T687I	ENST00000267163	NM_000321.2	687	aCc/aTc																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281606	49281606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	174	1115	1	ENST00000282018.3:c.653G>T	p.Ser218Ile	p.S218I	ENST00000282018	NM_020377.2	218	aGc/aTc																																																																														
IDH2	0	MSKCC	GRCh37	15	90628580	90628580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	143	1145	5	ENST00000330062.3:c.1007G>A	p.Cys336Tyr	p.C336Y	ENST00000330062	NM_002168.2	336	tGc/tAc																																																																														
CYLD	0	MSKCC	GRCh37	16	50826571	50826572	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	120	627	0	ENST00000398568.2:c.2301dup	p.Pro768SerfsTer12	p.P768Sfs*12	ENST00000398568	NM_001042412.1	766	att/aTtt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346277	89346277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	86	494	0	ENST00000301030.4:c.6673A>G	p.Thr2225Ala	p.T2225A	ENST00000301030	NM_001256183.1	2225	Acg/Gcg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15975514	15975514	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	144	887	0	ENST00000268712.3:c.3840del	p.Ser1281ValfsTer16	p.S1281Vfs*16	ENST00000268712	NM_006311.3	1280	ggG/gg																																																																														
BCL2	0	MSKCC	GRCh37	18	60795902	60795902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	147	891	1	ENST00000333681.4:c.676G>A	p.Val226Met	p.V226M	ENST00000333681		226	Gtg/Atg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211003	36211003	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	200	1390	0	ENST00000222270.7:c.758del	p.Pro253HisfsTer7	p.P253Hfs*7	ENST00000222270	NM_014727.1	252	Ccc/cc																																																																														
CIC	0	MSKCC	GRCh37	19	42799146	42799146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	180	1147	5	ENST00000575354.2:c.4630G>A	p.Ala1544Thr	p.A1544T	ENST00000575354	NM_015125.3	1544	Gct/Act																																																																														
TMEM127	0	MSKCC	GRCh37	2	96919562	96919562	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	126	821	1	ENST00000258439.3:c.701del	p.Pro234LeufsTer73	p.P234Lfs*73	ENST00000258439	NM_001193304.2	234	cCt/ct																																																																														
PMS1	0	MSKCC	GRCh37	2	190738270	190738270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	79	613	0	ENST00000441310.2:c.2522G>A	p.Cys841Tyr	p.C841Y	ENST00000441310	NM_000534.4	841	tGt/tAt																																																																														
CASP8	0	MSKCC	GRCh37	2	202131239	202131240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	111	754	0	ENST00000358485.4:c.211dup	p.Glu71GlyfsTer6	p.E71Gfs*6	ENST00000358485	NM_001080125.1	69	-/G																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026133	71026133	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	122	765	0	ENST00000318789.4:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000318789	NM_032682.5	497	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112174973	112174973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	46	394	0	ENST00000257430.4:c.3682C>T	p.Gln1228Ter	p.Q1228*	ENST00000257430	NM_000038.5	1228	Cag/Tag																																																																														
FGFR1	0	MSKCC	GRCh37	8	38282076	38282076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	182	1245	0	ENST00000425967.3:c.980A>G	p.Asn327Ser	p.N327S	ENST00000425967	NM_001174067.1	327	aAt/aGt																																																																														
NTRK2	0	MSKCC	GRCh37	9	87482251	87482251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	135	1004	0	ENST00000277120.3:c.1538G>A	p.Gly513Asp	p.G513D	ENST00000277120		513	gGc/gAc																																																																														
KLF4	0	MSKCC	GRCh37	9	110250280	110250282	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	143	1092	0	ENST00000374672.4:c.393_395del	p.Ser135del	p.S135del	ENST00000374672	NM_004235.4	131	tcCTCt/tct																																																																														
AMER1	0	MSKCC	GRCh37	X	63411798	63411799	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0021346-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	110	620	0	ENST00000330258.3:c.1368_1369del	p.Gln457GlufsTer2	p.Q457Efs*2	ENST00000330258	NM_152424.3	456	ccTCag/ccag																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9770533	9770534	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	176	741	0	ENST00000377346.4:c.24dup	p.Met9HisfsTer15	p.M9Hfs*15	ENST00000377346	NM_005026.3	7	tgc/tgCc																																																																														
JUN	0	MSKCC	GRCh37	1	59247851	59247851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	241	905	2	ENST00000371222.2:c.892G>A	p.Ala298Thr	p.A298T	ENST00000371222	NM_002228.3	298	Gcc/Acc																																																																														
GATA3	0	MSKCC	GRCh37	10	8100407	8100407	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	153	776	0	ENST00000346208.3:c.384del	p.Leu130SerfsTer65	p.L130Sfs*65	ENST00000346208		127	ccG/cc																																																																														
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	62	315	1	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88649974	88649974	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	166	779	0	ENST00000372037.3:c.223A>G	p.Thr75Ala	p.T75A	ENST00000372037	NM_004329.2	75	Aca/Gca																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64136996	64136996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	198	699	0	ENST00000334205.4:c.1507G>C	p.Glu503Gln	p.E503Q	ENST00000334205	NM_003942.2	503	Gag/Cag																																																																														
FGF4	0	MSKCC	GRCh37	11	69589830	69589830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	44	91	0	ENST00000168712.1:c.23C>T	p.Ala8Val	p.A8V	ENST00000168712	NM_002007.2	8	gCg/gTg																																																																														
ATM	0	MSKCC	GRCh37	11	108139269	108139269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	200	794	5	ENST00000278616.4:c.2771G>A	p.Arg924Gln	p.R924Q	ENST00000278616	NM_000051.3	924	cGg/cAg																																																																														
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	76	360	1	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	146	756	9	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426046	49426046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	157	720	0	ENST00000301067.7:c.12442A>G	p.Met4148Val	p.M4148V	ENST00000301067	NM_003482.3	4148	Atg/Gtg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	163	717	12	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
POLE	0	MSKCC	GRCh37	12	133250163	133250163	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	134	609	0	ENST00000320574.5:c.1357del	p.Gln453ArgfsTer19	p.Q453Rfs*19	ENST00000320574	NM_006231.2	453	Cag/ag																																																																														
CDK8	0	MSKCC	GRCh37	13	26923249	26923249	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	108	488	0	ENST00000381527.3:c.248del	p.Lys83ArgfsTer25	p.K83Rfs*25	ENST00000381527	NM_001260.1	82	cAa/ca																																																																														
PRKD1	0	MSKCC	GRCh37	14	30105560	30105560	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	196	870	1	ENST00000331968.5:c.1126C>T	p.Gln376Ter	p.Q376*	ENST00000331968	NM_002742.2	376	Cag/Tag																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986991	36986991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	101	538	1	ENST00000354822.5:c.698C>T	p.Thr233Met	p.T233M	ENST00000354822	NM_001079668.2	233	aCg/aTg																																																																														
AKT1	0	MSKCC	GRCh37	14	105239313	105239313	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	172	797	0	ENST00000349310.3:c.1074del	p.Phe358LeufsTer89	p.F358Lfs*89	ENST00000349310	NM_001014432.1	358	ttT/tt																																																																														
BLM	0	MSKCC	GRCh37	15	91304139	91304140	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	160	622	0	ENST00000355112.3:c.1543_1544del	p.Asn515Ter	p.N515*	ENST00000355112	NM_000057.2	512	ggAAaa/ggaa																																																																														
IGF1R	0	MSKCC	GRCh37	15	99192888	99192888	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	107	515	0	ENST00000268035.6:c.78G>A	p.Trp26Ter	p.W26*	ENST00000268035	NM_000875.3	26	tgG/tgA																																																																														
SLX4	0	MSKCC	GRCh37	16	3647657	3647657	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	235	878	3	ENST00000294008.3:c.1406delC	p.Pro469HisfsTer4	p.P469Hfs*4	ENST00000294008	NM_032444.2	469	cCa/ca																																																																														
CREBBP	0	MSKCC	GRCh37	16	3828111	3828111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	186	742	0	ENST00000262367.5:c.2014C>T	p.Arg672Cys	p.R672C	ENST00000262367	NM_004380.2	672	Cgt/Tgt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943635	9943635	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	129	749	0	ENST00000330684.3:c.1306T>C	p.Cys436Arg	p.C436R	ENST00000330684	NM_001134407.1	436	Tgt/Cgt																																																																														
SOCS1	0	MSKCC	GRCh37	16	11348863	11348863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	49	207	0	ENST00000332029.2:c.473C>G	p.Pro158Arg	p.P158R	ENST00000332029	NM_003745.1	158	cCg/cGg																																																																														
PALB2	0	MSKCC	GRCh37	16	23647027	23647028	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	195	786	0	ENST00000261584.4:c.839dup	p.Asn280LysfsTer3	p.N280Kfs*3	ENST00000261584	NM_024675.3	280	aac/aaAc																																																																														
CDH1	999	MSKCC	GRCh37	16	68835780	68835781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	120	634	0	ENST00000261769.5:c.377dup	p.Pro127AlafsTer41	p.P127Afs*41	ENST00000261769	NM_004360.3	124	cgc/cgCc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81962229	81962229	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	43	613	0	ENST00000359376.3:c.2581G>A	p.Val861Met	p.V861M	ENST00000359376	NM_002661.3	861	Gtg/Atg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346424	89346424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	152	711	2	ENST00000301030.4:c.6526G>A	p.Gly2176Ser	p.G2176S	ENST00000301030	NM_001256183.1	2176	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	185	678	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	167	651	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12032577	12032577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	117	649	0	ENST00000353533.5:c.1013C>T	p.Pro338Leu	p.P338L	ENST00000353533	NM_003010.3	338	cCg/cTg																																																																														
RNF43	0	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	104	664	0	ENST00000407977.2:c.1975_1976dup	p.Pro660ValfsTer41	p.P660Vfs*41	ENST00000407977		659	ggt/ggGGt																																																																														
RNF43	0	MSKCC	GRCh37	17	56435815	56435815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	87	524	0	ENST00000407977.2:c.1322delC	p.Pro441LeufsTer61	p.P441Lfs*61	ENST00000407977		441	cCt/ct																																																																														
RNF43	0	MSKCC	GRCh37	17	56439936	56439936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	209	564	3	ENST00000407977.2:c.656G>A	p.Arg219His	p.R219H	ENST00000407977		219	cGc/cAc																																																																														
BRIP1	0	MSKCC	GRCh37	17	59821817	59821817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	188	706	1	ENST00000259008.2:c.2233G>A	p.Ala745Thr	p.A745T	ENST00000259008	NM_032043.2	745	Gca/Aca																																																																														
SOX9	0	MSKCC	GRCh37	17	70119084	70120018	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	GCGAGGTGCACTCCCCCGGCGAGCACTCGGGTGAGTCGCCCCTCGACCCCACCGGACAAGCTATCTCCGTCCCGCCTGGCACACCCCCTGCCCTCCGCCTGGGAGATTCTTCGTGGGGACTTTATGCTTCCCGGGAGGGACACACTGCCCTTTGCGCCCGTCCCGCTCCCCTCTCTACCCAGAGCCTAAGAGGCATCCAAACAACACACACACAAACACACACACCCCAACTCAATCCCAGCATCCGAAGAGATTAACTTTTTTATTGGGAGGTAAAATGCCCTTAACAGCCTTACAAGACCTCTCCCTTCTTCTCTGCTCCCCCACCCCAAAAGCACACACAGGGCTCTTACACAAGTAGCAATTAGGTCTTCCGGACCCTCCGGGCCCCAGACCCTCCCCTGATAAAAGGGGGCTGTCCAGTGTGTACCGGCGGGTTAATCATTGGGCGACTTATCTCCGGTGCAGCGCGCCTCTTGCGCGGGTGCGGGCCCTTATTACACTTTAGCAGCGAGGGAGGGTCCCCGGAGGGTGCCTAAGACTAGGGCGTCTGCACAGCCCTTGTTGATTTTCTCGTGCTTGTTCTTTTATTGTCCACAGGGCAATCCCAGGGCCCACCGACCCCACCCACCACCCCCAAAACCGACGTGCAGCCGGGCAAGGCTGACCTGAAGCGAGAGGGGCGCCCCTTGCCAGAGGGGGGCAGACAGCCCCCTATCGACTTCCGCGACGTGGACATCGGCGAGCTGAGCAGCGACGTCATCTCCAACATCGAGACCTTCGATGTCAACGAGTTTGACCAGTACCTGCCGCCCAACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTACACGGGCAGCTACGGCATCAGCAGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	GCGAGGTGCACTCCCCCGGCGAGCACTCGGGTGAGTCGCCCCTCGACCCCACCGGACAAGCTATCTCCGTCCCGCCTGGCACACCCCCTGCCCTCCGCCTGGGAGATTCTTCGTGGGGACTTTATGCTTCCCGGGAGGGACACACTGCCCTTTGCGCCCGTCCCGCTCCCCTCTCTACCCAGAGCCTAAGAGGCATCCAAACAACACACACACAAACACACACACCCCAACTCAATCCCAGCATCCGAAGAGATTAACTTTTTTATTGGGAGGTAAAATGCCCTTAACAGCCTTACAAGACCTCTCCCTTCTTCTCTGCTCCCCCACCCCAAAAGCACACACAGGGCTCTTACACAAGTAGCAATTAGGTCTTCCGGACCCTCCGGGCCCCAGACCCTCCCCTGATAAAAGGGGGCTGTCCAGTGTGTACCGGCGGGTTAATCATTGGGCGACTTATCTCCGGTGCAGCGCGCCTCTTGCGCGGGTGCGGGCCCTTATTACACTTTAGCAGCGAGGGAGGGTCCCCGGAGGGTGCCTAAGACTAGGGCGTCTGCACAGCCCTTGTTGATTTTCTCGTGCTTGTTCTTTTATTGTCCACAGGGCAATCCCAGGGCCCACCGACCCCACCCACCACCCCCAAAACCGACGTGCAGCCGGGCAAGGCTGACCTGAAGCGAGAGGGGCGCCCCTTGCCAGAGGGGGGCAGACAGCCCCCTATCGACTTCCGCGACGTGGACATCGGCGAGCTGAGCAGCGACGTCATCTCCAACATCGAGACCTTCGATGTCAACGAGTTTGACCAGTACCTGCCGCCCAACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTACACGGGCAGCTACGGCATCAGCAGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	59	439	0	ENST00000245479.2:c.659_1023del		p.X220_splice	ENST00000245479	NM_000346.3	220	aGCGAGGTGCACTCCCCCGGCGAGCACTCGGGTGAGTCGCCCCTCGACCCCACCGGACAAGCTATCTCCGTCCCGCCTGGCACACCCCCTGCCCTCCGCCTGGGAGATTCTTCGTGGGGACTTTATGCTTCCCGGGAGGGACACACTGCCCTTTGCGCCCGTCCCGCTCCCCTCTCTACCCAGAGCCTAAGAGGCATCCAAACAACACACACACAAACACACACACCCCAACTCAATCCCAGCATCCGAAGAGATTAACTTTTTTATTGGGAGGTAAAATGCCCTTAACAGCCTTACAAGACCTCTCCCTTCTTCTCTGCTCCCCCACCCCAAAAGCACACACAGGGCTCTTACACAAGTAGCAATTAGGTCTTCCGGACCCTCCGGGCCCCAGACCCTCCCCTGATAAAAGGGGGCTGTCCAGTGTGTACCGGCGGGTTAATCATTGGGCGACTTATCTCCGGTGCAGCGCGCCTCTTGCGCGGGTGCGGGCCCTTATTACACTTTAGCAGCGAGGGAGGGTCCCCGGAGGGTGCCTAAGACTAGGGCGTCTGCACAGCCCTTGTTGATTTTCTCGTGCTTGTTCTTTTATTGTCCACAGGGCAATCCCAGGGCCCACCGACCCCACCCACCACCCCCAAAACCGACGTGCAGCCGGGCAAGGCTGACCTGAAGCGAGAGGGGCGCCCCTTGCCAGAGGGGGGCAGACAGCCCCCTATCGACTTCCGCGACGTGGACATCGGCGAGCTGAGCAGCGACGTCATCTCCAACATCGAGACCTTCGATGTCAACGAGTTTGACCAGTACCTGCCGCCCAACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTACACGGGCAGCTACGGCATCAGCAGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG/a																																																																														
PTPRS	0	MSKCC	GRCh37	19	5274347	5274348	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	58	525	0	ENST00000357368.4:c.99dup	p.Arg34GlnfsTer26	p.R34Qfs*26	ENST00000357368	NM_002850.3	33	-/C																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11130337	11130337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	142	707	1	ENST00000344626.4:c.2576C>T	p.Thr859Met	p.T859M	ENST00000344626	NM_003072.3	859	aCg/aTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288789	15288789	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	64	219	0	ENST00000263388.2:c.3950del	p.Pro1317GlnfsTer103	p.P1317Qfs*103	ENST00000263388	NM_000435.2	1317	cCa/ca																																																																														
BRD4	0	MSKCC	GRCh37	19	15349892	15349892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	159	534	2	ENST00000263377.2:c.3760C>T	p.Arg1254Trp	p.R1254W	ENST00000263377	NM_058243.2	1254	Cgg/Tgg																																																																														
UPF1	0	MSKCC	GRCh37	19	18943041	18943041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	141	559	0	ENST00000262803.5:c.23C>T	p.Pro8Leu	p.P8L	ENST00000262803	NM_002911.3	8	cCc/cTc																																																																														
UPF1	5976	MSKCC	GRCh37	19	18967091	18967092	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-	rs1384543747		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	134	755	0	ENST00000262803.5:c.1814_1815del	p.Glu605AlafsTer17	p.E605Afs*17	ENST00000262803	NM_002911.3	602	gcAGag/gcag																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214899	36214899	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	177	738	0	ENST00000222270.7:c.3325C>T	p.Arg1109Ter	p.R1109*	ENST00000222270	NM_014727.1	1109	Cga/Tga																																																																														
CIC	0	MSKCC	GRCh37	19	42793346	42793346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	38	709	0	ENST00000575354.2:c.1148C>A	p.Pro383His	p.P383H	ENST00000575354	NM_015125.3	383	cCt/cAt																																																																														
CIC	0	MSKCC	GRCh37	19	42794819	42794820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	115	559	0	ENST00000575354.2:c.1904dup	p.Asn636LysfsTer54	p.N636Kfs*54	ENST00000575354	NM_015125.3	633	-/C																																																																														
POLD1	0	MSKCC	GRCh37	19	50910394	50910394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	210	754	1	ENST00000440232.2:c.1649G>A	p.Gly550Asp	p.G550D	ENST00000440232	NM_002691.3	550	gGc/gAc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46607816	46607816	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	178	815	5	ENST00000263734.3:c.2009del	p.Pro670LeufsTer26	p.P670Lfs*26	ENST00000263734	NM_001430.4	669	Ccc/cc																																																																														
MSH6	0	MSKCC	GRCh37	2	48027807	48027807	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	132	530	0	ENST00000234420.5:c.2690del	p.Asn897IlefsTer9	p.N897Ifs*9	ENST00000234420	NM_000179.2	895	acA/ac																																																																														
ERBB4	0	MSKCC	GRCh37	2	212587232	212587232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	108	584	1	ENST00000342788.4:c.769G>T	p.Ala257Ser	p.A257S	ENST00000342788	NM_005235.2	257	Gca/Tca																																																																														
INHA	0	MSKCC	GRCh37	2	220437223	220437223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	195	871	1	ENST00000243786.2:c.132del	p.Ala45ArgfsTer2	p.A45Rfs*2	ENST00000243786	NM_002191.3	43	Ccc/cc																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	172	825	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31017747	31017749	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	129	645	7	ENST00000375687.4:c.619_621del	p.Ser207del	p.S207del	ENST00000375687	NM_015338.5	203	tcCAGc/tcc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023045	31023046	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	179	701	0	ENST00000375687.4:c.2535dup	p.Ser846GlnfsTer5	p.S846Qfs*5	ENST00000375687	NM_015338.5	844	acc/aCcc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31395624	31395624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	206	753	0	ENST00000328111.2:c.2477G>A	p.Arg826His	p.R826H	ENST00000328111	NM_006892.3	826	cGc/cAc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46281784	46281784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	192	837	0	ENST00000371998.3:c.4231C>T	p.Pro1411Ser	p.P1411S	ENST00000371998		1411	Ccc/Tcc																																																																														
AURKA	0	MSKCC	GRCh37	20	54961396	54961396	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	100	331	0	ENST00000312783.6:c.236T>G	p.Leu79Trp	p.L79W	ENST00000312783	NM_198436.1	79	tTg/tGg																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	117	594	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
RTEL1	0	MSKCC	GRCh37	20	62290766	62290766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	23	261	0	ENST00000508582.2:c.11T>C	p.Ile4Thr	p.I4T	ENST00000508582		4	aTa/aCa																																																																														
RTEL1	0	MSKCC	GRCh37	20	62292700	62292700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	152	735	0	ENST00000508582.2:c.152G>A	p.Cys51Tyr	p.C51Y	ENST00000508582		51	tGc/tAc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091782	29091782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	154	659	0	ENST00000328354.6:c.1175C>T	p.Ala392Val	p.A392V	ENST00000328354	NM_007194.3	392	gCg/gTg																																																																														
EP300	0	MSKCC	GRCh37	22	41545897	41545897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	189	860	1	ENST00000263253.7:c.2512C>T	p.Arg838Cys	p.R838C	ENST00000263253	NM_001429.3	838	Cgt/Tgt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713295	30713295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	27	484	0	ENST00000359013.4:c.695G>A	p.Arg232Gln	p.R232Q	ENST00000359013	NM_001024847.2	232	cGg/cAg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52584478	52584478	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142726131		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	184	624	1	ENST00000394830.3:c.4535C>T	p.Ala1512Val	p.A1512V	ENST00000394830	NM_018313.4	1512	gCg/gTg																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	117	523	3	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	242	896	9	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156558	55156558	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	175	710	0	ENST00000257290.5:c.2959G>T	p.Ala987Ser	p.A987S	ENST00000257290	NM_006206.4	987	Gca/Tca																																																																														
EPHA5	0	MSKCC	GRCh37	4	66242741	66242741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	83	431	0	ENST00000273854.3:c.1831G>A	p.Ala611Thr	p.A611T	ENST00000273854	NM_004439.5	611	Gct/Act																																																																														
FAT1	0	MSKCC	GRCh37	4	187525698	187525698	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	139	481	0	ENST00000441802.2:c.10381C>T	p.Gln3461Ter	p.Q3461*	ENST00000441802	NM_005245.3	3461	Cag/Tag																																																																														
TERT	0	MSKCC	GRCh37	5	1294408	1294408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	186	656	2	ENST00000310581.5:c.593G>A	p.Gly198Glu	p.G198E	ENST00000310581	NM_198253.2	198	gGa/gAa																																																																														
IL7R	0	MSKCC	GRCh37	5	35876086	35876086	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	113	405	0	ENST00000303115.3:c.878A>G	p.Asn293Ser	p.N293S	ENST00000303115	NM_002185.3	293	aAt/aGt																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	199	769	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
CSF1R	0	MSKCC	GRCh37	5	149456907	149456907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	214	854	0	ENST00000286301.3:c.821G>A	p.Gly274Asp	p.G274D	ENST00000286301	NM_005211.3	274	gGc/gAc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520545	176520545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	182	732	0	ENST00000292408.4:c.1390C>T	p.Arg464Trp	p.R464W	ENST00000292408	NM_213647.1	464	Cgg/Tgg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176524552	176524552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	189	867	0	ENST00000292408.4:c.2284G>A	p.Gly762Arg	p.G762R	ENST00000292408	NM_213647.1	762	Gga/Aga																																																																														
E2F3	0	MSKCC	GRCh37	6	20402833	20402833	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	16	54	0	ENST00000346618.3:c.370A>G	p.Ser124Gly	p.S124G	ENST00000346618	NM_001949.4	124	Agc/Ggc																																																																														
STK19	0	MSKCC	GRCh37	6	31947251	31947251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	170	810	0	ENST00000375331.2:c.724G>A	p.Val242Ile	p.V242I	ENST00000375331	NM_004197.1	242	Gta/Ata																																																																														
TAP1	0	MSKCC	GRCh37	6	32818901	32818902	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	137	655	0	ENST00000354258.4:c.1049_1050del	p.Glu350GlyfsTer7	p.E350Gfs*7	ENST00000354258	NM_000593.5	350	gAG/g																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120753	94120754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	150	613	0	ENST00000369303.4:c.297dup	p.Val100CysfsTer11	p.V100Cfs*11	ENST00000369303	NM_004440.3	99	-/T																																																																														
ARID1B	57492	MSKCC	GRCh37	6	157405954	157405954	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	132	631	3	ENST00000346085.5:c.2201del	p.Gly734AlafsTer11	p.G734Afs*11	ENST00000346085	NM_020732.3	732	ccG/cc																																																																														
PMS2	0	MSKCC	GRCh37	7	6038876	6038876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	181	632	0	ENST00000265849.7:c.568G>A	p.Ala190Thr	p.A190T	ENST00000265849	NM_000535.5	190	Gca/Aca																																																																														
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	58	247	2	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450279	50450279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	117	646	0	ENST00000331340.3:c.463A>G	p.Thr155Ala	p.T155A	ENST00000331340	NM_006060.4	155	Acc/Gcc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508235	106508235	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	81	358	1	ENST00000359195.3:c.229C>T	p.Arg77Ter	p.R77*	ENST00000359195	NM_002649.2	77	Cga/Tga																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508557	106508557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	44	284	0	ENST00000359195.3:c.551G>A	p.Arg184His	p.R184H	ENST00000359195	NM_002649.2	184	cGc/cAc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	131	577	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	181	818	8	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																																																														
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	113	542	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																																																														
RAD21	0	MSKCC	GRCh37	8	117862939	117862939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	152	683	0	ENST00000297338.2:c.1538G>A	p.Cys513Tyr	p.C513Y	ENST00000297338	NM_006265.2	513	tGt/tAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971062	21971062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	62	508	2	ENST00000304494.5:c.296G>A	p.Arg99Gln	p.R99Q	ENST00000304494	NM_000077.4	99	cGg/cAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971062	21971062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	62	508	2	ENST00000304494.5:c.296G>A	p.Arg99Gln	p.R99Q	ENST00000304494	NM_000077.4	99	cGg/cAg																																																																														
PAX5	0	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	176	654	2	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	111	512	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	153	815	6	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390697	139390697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	199	898	2	ENST00000277541.6:c.7494del	p.Ser2499AlafsTer90	p.S2499Afs*90	ENST00000277541	NM_017617.3	2498	ccC/cc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413229	139413229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	204	826	1	ENST00000277541.6:c.913G>A	p.Ala305Thr	p.A305T	ENST00000277541	NM_017617.3	305	Gcc/Acc																																																																														
EGFL7	0	MSKCC	GRCh37	9	139564701	139564701	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	58	963	0	ENST00000308874.7:c.490T>C	p.Trp164Arg	p.W164R	ENST00000308874		164	Tgg/Cgg																																																																														
CRLF2	0	MSKCC	GRCh37	X	1325355	1325355	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	135	637	0	ENST00000381566.1:c.320del	p.Phe107SerfsTer11	p.F107Sfs*11	ENST00000381566		107	tTc/tc																																																																														
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	128	539	0	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																																																														
AR	0	MSKCC	GRCh37	X	66941772	66941772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	116	773	0	ENST00000374690.3:c.2416C>A	p.Leu806Met	p.L806M	ENST00000374690	NM_000044.3	806	Ctg/Atg																																																																														
MED12	0	MSKCC	GRCh37	X	70350054	70350054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	93	496	0	ENST00000374080.3:c.4037G>A	p.Arg1346His	p.R1346H	ENST00000374080		1346	cGc/cAc																																																																														
CDH1	0	MSKCC	GRCh37	16	68857442	68857442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	203	725	0	ENST00000261769.5:c.2077G>A	p.Gly693Ser	p.G693S	ENST00000261769	NM_004360.3	693	Ggc/Agc																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	90	472	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	119	655	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	113	554	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
CIC	0	MSKCC	GRCh37	19	42799299	42799300	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	60	448	0	ENST00000575354.2:c.4790dupC	p.Pro1598ThrfsTer16	p.P1598Tfs*16	ENST00000575354	NM_015125.3	1595	tcc/tCcc																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	363	717	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
INSR	0	MSKCC	GRCh37	19	7143049	7143049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	131	672	0	ENST00000302850.5:c.2320G>A	p.Val774Met	p.V774M	ENST00000302850	NM_000208.2	774	Gtg/Atg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	55	438	6	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	129	577	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	30	888	0	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg																																																																														
BAP1	0	MSKCC	GRCh37	3	52443613	52443613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	32	621	0	ENST00000460680.1:c.79delG	p.Val27CysfsTer45	p.V27Cfs*45	ENST00000460680	NM_004656.3	27	Gtg/tg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	143	663	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538846	23538846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	90	521	0	ENST00000380871.4:c.593C>T	p.Pro198Leu	p.P198L	ENST00000380871	NM_006167.3	198	cCg/cTg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	154	672	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	36	672	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	137	616	10	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																																																														
RAD50	0	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	85	538	4	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	248	570	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	35	841	3	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																																																														
IRS1	0	MSKCC	GRCh37	2	227660348	227660350	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	61	505	0	ENST00000305123.5:c.3105_3107del	p.Ser1038del	p.S1038del	ENST00000305123	NM_005544.2	1035	tcCTCa/tca																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	127	712	10	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
TP53	0	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	28	736	0	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	115	654	1	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	160	693	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138172	64138172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	175	732	2	ENST00000334205.4:c.2095C>T	p.Arg699Cys	p.R699C	ENST00000334205	NM_003942.2	699	Cgc/Tgc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157150512	157150512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	138	666	1	ENST00000346085.5:c.1694G>A	p.Arg565Gln	p.R565Q	ENST00000346085	NM_020732.3	565	cGg/cAg																																																																														
GATA1	0	MSKCC	GRCh37	X	48649561	48649561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	175	447	0	ENST00000376670.3:c.49del	p.Gln17SerfsTer120	p.Q17Sfs*120	ENST00000376670	NM_002049.3	15	ctC/ct																																																																														
FGFR2	0	MSKCC	GRCh37	10	123263394	123263394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	179	597	1	ENST00000358487.5:c.1349G>A	p.Arg450His	p.R450H	ENST00000358487	NM_000141.4	450	cGc/cAc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48025857	48025857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1472949451		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	70	439	0	ENST00000234420.5:c.741del	p.Lys247AsnfsTer32	p.K247Nfs*32	ENST00000234420	NM_000179.2	245	atA/at																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	166	789	1	ENST00000298229.2:c.1322delA	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																																																														
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	329	778	5	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998127	169998128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs756514123		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	151	823	9	ENST00000295797.4:c.826dup	p.Thr276AsnfsTer16	p.T276Nfs*16	ENST00000295797	NM_002740.5	273	tta/ttAa																																																																														
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	139	893	2	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																																																														
RECQL	5965	MSKCC	GRCh37	12	21644547	21644547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs745659712		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	131	823	8	ENST00000421138.2:c.120del	p.Val41SerfsTer2	p.V41Sfs*2	ENST00000421138		40	aaA/aa																																																																														
CARD11	0	MSKCC	GRCh37	7	2984022	2984022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	26	730	1	ENST00000396946.4:c.508C>T	p.Arg170Cys	p.R170C	ENST00000396946	NM_032415.4	170	Cgc/Tgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49421039	49421039	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	151	642	0	ENST00000301067.7:c.14710C>T	p.Arg4904Ter	p.R4904*	ENST00000301067	NM_003482.3	4904	Cga/Tga																																																																														
JAK3	0	MSKCC	GRCh37	19	17942593	17942593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	107	593	5	ENST00000458235.1:c.2695C>T	p.Arg899Trp	p.R899W	ENST00000458235	NM_000215.3	899	Cgg/Tgg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117872	70117872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	124	489	0	ENST00000245479.2:c.340G>A	p.Val114Met	p.V114M	ENST00000245479	NM_000346.3	114	Gtg/Atg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143007331	143007332	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	132	606	0	ENST00000262992.4:c.2452dupA	p.Arg818LysfsTer26	p.R818Kfs*26	ENST00000262992	NM_001101669.1	818	aga/aAga																																																																														
INPPL1	0	MSKCC	GRCh37	11	71942171	71942171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	223	770	0	ENST00000298229.2:c.1435C>T	p.Arg479Cys	p.R479C	ENST00000298229	NM_001567.3	479	Cgc/Tgc																																																																														
MTOR	0	MSKCC	GRCh37	1	11313900	11313900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	166	621	1	ENST00000361445.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000361445	NM_004958.3	279	gGa/gAa																																																																														
STK40	0	MSKCC	GRCh37	1	36826845	36826846	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	155	733	0	ENST00000373129.3:c.88_89del	p.Lys30GlufsTer31	p.K30Efs*31	ENST00000373129	NM_032017.1	30	AAg/g																																																																														
MYCL1	0	MSKCC	GRCh37	1	40366751	40366751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	83	556	1	ENST00000397332.2:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000397332	NM_001033082.2	149	cGg/cAg																																																																														
HRAS	0	MSKCC	GRCh37	11	534318	534318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	21	401	1	ENST00000311189.7:c.5C>T	p.Thr2Met	p.T2M	ENST00000311189		2	aCg/aTg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71945645	71945645	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	101	625	0	ENST00000298229.2:c.2401del	p.Arg801AlafsTer44	p.R801Afs*44	ENST00000298229	NM_001567.3	801	Cgc/gc																																																																														
PGR	0	MSKCC	GRCh37	11	100962543	100962544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	118	681	0	ENST00000325455.5:c.1853dup	p.Asn618LysfsTer8	p.N618Kfs*8	ENST00000325455	NM_001202474.3	618	aac/aaAc																																																																														
ATM	0	MSKCC	GRCh37	11	108123593	108123593	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	137	625	0	ENST00000278616.4:c.1856del	p.Asn619ThrfsTer6	p.N619Tfs*6	ENST00000278616	NM_000051.3	618	Aaa/aa																																																																														
ARID2	0	MSKCC	GRCh37	12	46245541	46245541	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	52	436	0	ENST00000334344.6:c.3635T>G	p.Leu1212Arg	p.L1212R	ENST00000334344	NM_152641.2	1212	cTt/cGt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434054	49434054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	151	721	0	ENST00000301067.7:c.7499C>T	p.Ala2500Val	p.A2500V	ENST00000301067	NM_003482.3	2500	gCg/gTg																																																																														
GLI1	0	MSKCC	GRCh37	12	57864483	57864483	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	147	673	0	ENST00000228682.2:c.1960G>T	p.Val654Phe	p.V654F	ENST00000228682	NM_005269.2	654	Gtc/Ttc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856434	111856434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	90	406	4	ENST00000341259.2:c.489delC	p.Thr165ProfsTer32	p.T165Pfs*32	ENST00000341259	NM_005475.2	162	gCc/gc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426649	121426649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	33	666	3	ENST00000257555.6:c.340C>T	p.Arg114Cys	p.R114C	ENST00000257555		114	Cgt/Tgt																																																																														
POLE	0	MSKCC	GRCh37	12	133219168	133219168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	191	811	0	ENST00000320574.5:c.4876C>T	p.Arg1626Cys	p.R1626C	ENST00000320574	NM_006231.2	1626	Cgc/Tgc																																																																														
TSHR	0	MSKCC	GRCh37	14	81610666	81610666	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	88	480	0	ENST00000298171.2:c.2264T>A	p.Ile755Asn	p.I755N	ENST00000298171	NM_000369.2	755	aTc/aAc																																																																														
DICER1	0	MSKCC	GRCh37	14	95562695	95562697	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	131	545	0	ENST00000343455.3:c.4560_4562del	p.Glu1520del	p.E1520del	ENST00000343455	NM_177438.2	1520	gaAGAt/gat																																																																														
MGA	0	MSKCC	GRCh37	15	41988354	41988354	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	89	721	0	ENST00000219905.7:c.1146A>C	p.Lys382Asn	p.K382N	ENST00000219905	NM_001164273.1	382	aaA/aaC																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900755	3900755	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	97	598	0	ENST00000262367.5:c.341G>C	p.Ser114Thr	p.S114T	ENST00000262367	NM_004380.2	114	aGc/aCc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831834	72831834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	225	906	1	ENST00000268489.5:c.4747G>A	p.Gly1583Ser	p.G1583S	ENST00000268489	NM_006885.3	1583	Ggt/Agt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991701	72991715	+	inframe_deletion	In_Frame_Del	DEL	CCGCCGCCGCAGCCA	CCGCCGCCGCAGCCA	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	18	437	0	ENST00000268489.5:c.2330_2344del	p.Val777_Ala781del	p.V777_A781del	ENST00000268489	NM_006885.3	777	gTGGCTGCGGCGGCGGcg/gcg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81953259	81953259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	78	420	0	ENST00000359376.3:c.2225G>A	p.Arg742His	p.R742H	ENST00000359376	NM_002661.3	742	cGc/cAc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81972491	81972493	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	162	683	0	ENST00000359376.3:c.3291_3293delCAA	p.Asn1097del	p.N1097del	ENST00000359376	NM_002661.3	1095	gACAac/gac																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351548	89351548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	274	907	1	ENST00000301030.4:c.1402C>T	p.Arg468Cys	p.R468C	ENST00000301030	NM_001256183.1	468	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7579440	7579440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	39	777	0	ENST00000269305.4:c.247G>A	p.Ala83Thr	p.A83T	ENST00000269305	NM_001126112.2	83	Gcg/Acg																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7989469	7989469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	140	686	1	ENST00000319144.4:c.217C>T	p.Arg73Trp	p.R73W	ENST00000319144	NM_001139.2	73	Cgg/Tgg																																																																														
FLCN	0	MSKCC	GRCh37	17	17118505	17118505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	113	735	0	ENST00000285071.4:c.1426G>A	p.Asp476Asn	p.D476N	ENST00000285071	NM_144997.5	476	Gac/Aac																																																																														
PPM1D	0	MSKCC	GRCh37	17	58677897	58677897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	118	474	0	ENST00000305921.3:c.122C>T	p.Pro41Leu	p.P41L	ENST00000305921	NM_003620.3	41	cCg/cTg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2207608	2207608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	154	773	2	ENST00000398665.3:c.892C>T	p.Pro298Ser	p.P298S	ENST00000398665	NM_032482.2	298	Ccc/Tcc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210763	36210764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	107	803	0	ENST00000222270.7:c.520_521dupCC	p.Lys175GlnfsTer20	p.K175Qfs*20	ENST00000222270	NM_014727.1	172	acc/aCCcc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45864880	45864880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	188	903	1	ENST00000391945.4:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000391945	NM_000400.3	380	cGg/cAg																																																																														
SOS1	0	MSKCC	GRCh37	2	39241907	39241907	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	57	430	0	ENST00000402219.2:c.1939A>G	p.Arg647Gly	p.R647G	ENST00000402219	NM_005633.3	647	Agg/Ggg																																																																														
CASP8	0	MSKCC	GRCh37	2	202139630	202139630	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	31	512	2	ENST00000358485.4:c.791T>C	p.Val264Ala	p.V264A	ENST00000358485	NM_001080125.1	264	gTa/gCa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530142	212530143	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	72	568	0	ENST00000342788.4:c.1776dupA	p.Cys593MetfsTer17	p.C593Mfs*17	ENST00000342788	NM_005235.2	592	-/A																																																																														
PTPRT	0	MSKCC	GRCh37	20	41818310	41818310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	23	77	0	ENST00000373198.4:c.64G>A	p.Gly22Ser	p.G22S	ENST00000373198	NM_133170.3	22	Ggc/Agc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121275	29121275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	111	933	1	ENST00000328354.6:c.400G>A	p.Asp134Asn	p.D134N	ENST00000328354	NM_007194.3	134	Gat/Aat																																																																														
VHL	0	MSKCC	GRCh37	3	10191621	10191621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	152	683	0	ENST00000256474.2:c.614G>A	p.Arg205His	p.R205H	ENST00000256474	NM_000551.3	205	cGc/cAc																																																																														
MST1R	0	MSKCC	GRCh37	3	49936539	49936539	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	178	812	0	ENST00000296474.3:c.1388A>G	p.His463Arg	p.H463R	ENST00000296474	NM_002447.2	463	cAc/cGc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52621447	52621447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	175	698	0	ENST00000394830.3:c.2970del	p.Glu991LysfsTer17	p.E991Kfs*17	ENST00000394830	NM_018313.4	990	aaA/aa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480428	89480428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	142	467	0	ENST00000336596.2:c.2265C>A	p.Asn755Lys	p.N755K	ENST00000336596	NM_005233.5	755	aaC/aaA																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138382755	138382756	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1224981079		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	58	545	0	ENST00000289153.2:c.2788dup	p.Thr930AsnfsTer8	p.T930Nfs*8	ENST00000289153	NM_006219.2	930	act/aAct																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664787	138664787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	106	305	0	ENST00000330315.3:c.778C>T	p.Arg260Cys	p.R260C	ENST00000330315	NM_023067.3	260	Cgc/Tgc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1978227	1978227	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	208	864	0	ENST00000382891.5:c.3650del	p.Lys1217ArgfsTer112	p.K1217Rfs*112	ENST00000382891	NM_133335.3	1216	gAa/ga																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41748146	41748146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	78	372	0	ENST00000226382.2:c.623G>A	p.Cys208Tyr	p.C208Y	ENST00000226382	NM_003924.3	208	tGc/tAc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467372	66467373	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	45	276	0	ENST00000273854.3:c.896dup	p.Asn299LysfsTer32	p.N299Kfs*32	ENST00000273854	NM_004439.5	299	aat/aaAt																																																																														
FGFR4	0	MSKCC	GRCh37	5	176520202	176520202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	116	731	0	ENST00000292408.4:c.1121C>T	p.Ala374Val	p.A374V	ENST00000292408	NM_213647.1	374	gCg/gTg																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158764	26158764	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	114	652	1	ENST00000289316.2:c.367A>G	p.Thr123Ala	p.T123A	ENST00000289316	NM_138720.2	123	Acc/Gcc																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910696	29910697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	386	1013	0	ENST00000376809.5:c.240dup	p.Pro81AlafsTer18	p.P81Afs*18	ENST00000376809	NM_002116.7	79	gag/gaGg																																																																														
ROS1	0	MSKCC	GRCh37	6	117710740	117710740	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	94	475	0	ENST00000368508.3:c.1532T>C	p.Val511Ala	p.V511A	ENST00000368508	NM_002944.2	511	gTc/gCc																																																																														
LATS1	0	MSKCC	GRCh37	6	150023202	150023202	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	30	742	2	ENST00000253339.5:c.61A>G	p.Ser21Gly	p.S21G	ENST00000253339		21	Agt/Ggt																																																																														
CARD11	0	MSKCC	GRCh37	7	2976790	2976790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	236	1013	2	ENST00000396946.4:c.1222C>A	p.Arg408Ser	p.R408S	ENST00000396946	NM_032415.4	408	Cgc/Agc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964485	70964485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	194	779	0	ENST00000276594.2:c.1543A>C	p.Lys515Gln	p.K515Q	ENST00000276594	NM_024504.3	515	Aag/Cag																																																																														
CD274	0	MSKCC	GRCh37	9	5462846	5462846	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	45	244	0	ENST00000381577.3:c.407A>C	p.Lys136Thr	p.K136T	ENST00000381577	NM_014143.3	136	aAa/aCa																																																																														
TRAF2	0	MSKCC	GRCh37	9	139802658	139802658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	98	557	1	ENST00000247668.2:c.503C>T	p.Ala168Val	p.A168V	ENST00000247668	NM_021138.3	168	gCa/gTa																																																																														
ARAF	0	MSKCC	GRCh37	X	47424288	47424288	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs56197559		P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	30	339	0	ENST00000377045.4:c.293T>C	p.Met98Thr	p.M98T	ENST00000377045	NM_001654.4	98	aTg/aCg																																																																														
MED12	0	MSKCC	GRCh37	X	70344915	70344915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	176	382	0	ENST00000374080.3:c.2145G>T	p.Lys715Asn	p.K715N	ENST00000374080		715	aaG/aaT																																																																														
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	170	540	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	53	288	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	84	534	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	78	603	2	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111402	56111403	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	76	385	0	ENST00000399503.3:c.14_16dup	p.Ala5dup	p.A5dup	ENST00000399503	NM_005921.1	5	atg/atGGCg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	152	393	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
RAD51D	0	MSKCC	GRCh37	17	33446586	33446586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	32	627	0	ENST00000335858.7:c.47T>C	p.Met16Thr	p.M16T	ENST00000335858	NM_133629.2	16	aTg/aCg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391986	139391986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	147	709	2	ENST00000277541.6:c.6205G>A	p.Ala2069Thr	p.A2069T	ENST00000277541	NM_017617.3	2069	Gcc/Acc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30648416	30648416	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	102	543	0	ENST00000359013.4:c.41T>C	p.Ile14Thr	p.I14T	ENST00000359013	NM_001024847.2	14	aTc/aCc																																																																														
MEN1	0	MSKCC	GRCh37	11	64572649	64572649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	146	730	0	ENST00000337652.1:c.1222G>A	p.Ala408Thr	p.A408T	ENST00000337652	NM_130803.2	408	Gcc/Acc																																																																														
RNF43	0	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	141	747	4	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																																																														
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	155	795	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711960	89711960	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	71	547	0	ENST00000371953.3:c.578T>C	p.Leu193Pro	p.L193P	ENST00000371953	NM_000314.4	193	cTg/cCg																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	163	896	9	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																																																														
U2AF1	0	MSKCC	GRCh37	21	44513282	44513287	+	inframe_deletion	In_Frame_Del	DEL	CCACCG	CCACCG	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	93	794	1	ENST00000291552.4:c.648_653delCGGTGG	p.Gly222_Gly223del	p.G222_G223del	ENST00000291552	NM_006758.2	216	ggCGGTGGt/ggt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	86	740	0	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591131	67591148	+	inframe_deletion	In_Frame_Del	DEL	AGACGAGAGACCAATACT	AGACGAGAGACCAATACT	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	53	363	0	ENST00000274335.5:c.1724_1741del	p.Lys575_Leu581delinsMet	p.K575_L581delinsM	ENST00000274335		575	aAGACGAGAGACCAATACTtg/atg																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45656840	45656840	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	143	616	7	ENST00000407780.3:c.316del	p.Gln106ArgfsTer11	p.Q106Rfs*11	ENST00000407780	NM_001283052.1	106	Cag/ag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	144	764	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	183	827	7	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	81	571	1	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																														
GATA2	0	MSKCC	GRCh37	3	128204992	128204992	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	121	702	1	ENST00000341105.2:c.449del	p.Gly150GlufsTer68	p.G150Efs*68	ENST00000341105	NM_032638.4	150	gGa/ga																																																																														
MYCN	0	MSKCC	GRCh37	2	16085954	16085954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	99	571	0	ENST00000281043.3:c.1130C>T	p.Ser377Leu	p.S377L	ENST00000281043	NM_005378.4	377	tCg/tTg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138845	64138845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	159	735	0	ENST00000334205.4:c.2212G>A	p.Ala738Thr	p.A738T	ENST00000334205	NM_003942.2	738	Gcc/Acc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3788609	3788609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	124	491	0	ENST00000262367.5:c.4345G>A	p.Val1449Ile	p.V1449I	ENST00000262367	NM_004380.2	1449	Gtt/Att																																																																														
ALK	0	MSKCC	GRCh37	2	30142991	30142991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62129830		P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	217	898	2	ENST00000389048.3:c.535C>T	p.Arg179Cys	p.R179C	ENST00000389048	NM_004304.4	179	Cgc/Tgc																																																																														
AGO2	27161	MSKCC	GRCh37	8	141554345	141554345	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs779015608		P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	190	929	6	ENST00000220592.5:c.1806del	p.Ala603ProfsTer92	p.A603Pfs*92	ENST00000220592	NM_012154.3	602	ccC/cc																																																																														
TBX3	6926	MSKCC	GRCh37	12	115115446	115115446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	127	672	0	ENST00000257566.3:c.880del	p.Ile294Ter	p.I294*	ENST00000257566	NM_016569.3	294	Ata/ta																																																																														
CARD11	0	MSKCC	GRCh37	7	2946453	2946453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	140	673	3	ENST00000396946.4:c.3284C>T	p.Thr1095Met	p.T1095M	ENST00000396946	NM_032415.4	1095	aCg/aTg																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780039	9780039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	118	753	2	ENST00000377346.4:c.1303G>A	p.Gly435Arg	p.G435R	ENST00000377346	NM_005026.3	435	Ggg/Agg																																																																														
CARD11	0	MSKCC	GRCh37	7	2966388	2966388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145836432		P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	152	674	0	ENST00000396946.4:c.1792G>A	p.Ala598Thr	p.A598T	ENST00000396946	NM_032415.4	598	Gcc/Acc																																																																														
MTOR	0	MSKCC	GRCh37	1	11193154	11193154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	120	606	1	ENST00000361445.4:c.5347G>A	p.Asp1783Asn	p.D1783N	ENST00000361445	NM_004958.3	1783	Gac/Aac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101369	27101369	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141670393		P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	122	709	2	ENST00000324856.7:c.4651C>T	p.Arg1551Cys	p.R1551C	ENST00000324856	NM_006015.4	1551	Cgc/Tgc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46743794	46743794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	151	753	0	ENST00000371975.4:c.2084A>G	p.Asp695Gly	p.D695G	ENST00000371975	NM_003579.3	695	gAt/gGt																																																																														
JUN	0	MSKCC	GRCh37	1	59248126	59248126	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	37	174	0	ENST00000371222.2:c.617A>C	p.Gln206Pro	p.Q206P	ENST00000371222	NM_002228.3	206	cAg/cCg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120491737	120491737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	24	438	0	ENST00000256646.2:c.2492A>G	p.Gln831Arg	p.Q831R	ENST00000256646	NM_024408.3	831	cAg/cGg																																																																														
PARP1	0	MSKCC	GRCh37	1	226570787	226570787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	134	575	0	ENST00000366794.5:c.1109C>T	p.Pro370Leu	p.P370L	ENST00000366794	NM_001618.3	370	cCg/cTg																																																																														
SUFU	0	MSKCC	GRCh37	10	104263999	104264000	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	87	512	1	ENST00000369902.3:c.95dup	p.Leu34ThrfsTer14	p.L34Tfs*14	ENST00000369902	NM_016169.3	30	-/C																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710557	114710558	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	94	540	0	ENST00000543371.1:c.44dup	p.Asn15LysfsTer29	p.N15Kfs*29	ENST00000543371	NM_001198531.1	14	-/A																																																																														
INPPL1	0	MSKCC	GRCh37	11	71936081	71936081	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	16	122	0	ENST00000298229.2:c.57del	p.Ser20ProfsTer7	p.S20Pfs*7	ENST00000298229	NM_001567.3	18	gCc/gc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197308	94197308	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	86	539	4	ENST00000323929.3:c.1196del	p.Phe399SerfsTer29	p.F399Sfs*29	ENST00000323929	NM_005591.3	399	tTc/tc																																																																														
KDM5A	0	MSKCC	GRCh37	12	431638	431638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	107	639	0	ENST00000399788.2:c.2371G>A	p.Ala791Thr	p.A791T	ENST00000399788	NM_001042603.1	791	Gct/Act																																																																														
RAD52	0	MSKCC	GRCh37	12	1025533	1025533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	149	759	0	ENST00000358495.3:c.842C>T	p.Thr281Met	p.T281M	ENST00000358495	NM_134424.2	281	aCg/aTg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18715671	18715671	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	70	402	0	ENST00000266497.5:c.3502A>G	p.Lys1168Glu	p.K1168E	ENST00000266497		1168	Aaa/Gaa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426679	49426696	+	inframe_deletion	In_Frame_Del	DEL	GCTGTTGCTGCTGTTGAA	GCTGTTGCTGCTGTTGAA	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	47	444	0	ENST00000301067.7:c.11792_11809del	p.Leu3931_Gln3936del	p.L3931_Q3936del	ENST00000301067	NM_003482.3	3931	cTTCAACAGCAGCAACAGCag/cag																																																																														
TBX3	0	MSKCC	GRCh37	12	115112000	115112000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	178	773	0	ENST00000257566.3:c.1740C>A	p.Phe580Leu	p.F580L	ENST00000257566	NM_016569.3	580	ttC/ttA																																																																														
MSI1	0	MSKCC	GRCh37	12	120800917	120800919	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	170	751	1	ENST00000257552.2:c.329_331del	p.Lys110del	p.K110del	ENST00000257552	NM_002442.3	110	aAGAtc/atc																																																																														
FLT3	0	MSKCC	GRCh37	13	28609704	28609704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	136	778	0	ENST00000241453.7:c.1525G>A	p.Gly509Arg	p.G509R	ENST00000241453	NM_004119.2	509	Ggg/Agg																																																																														
RAD51	0	MSKCC	GRCh37	15	41020908	41020908	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	80	607	4	ENST00000267868.3:c.531-1G>T		p.X177_splice	ENST00000267868	NM_002875.4	177																																																																															
ZFHX3	0	MSKCC	GRCh37	16	72923696	72923696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	94	685	0	ENST00000268489.5:c.3382C>A	p.Leu1128Ile	p.L1128I	ENST00000268489	NM_006885.3	1128	Ctt/Att																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349770	89349770	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	181	917	1	ENST00000301030.4:c.3180del	p.Asp1061IlefsTer257	p.D1061Ifs*257	ENST00000301030	NM_001256183.1	1060	aaA/aa																																																																														
GPS2	0	MSKCC	GRCh37	17	7218328	7218328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	125	713	1	ENST00000380728.2:c.44C>T	p.Ala15Val	p.A15V	ENST00000380728		15	gCc/gTc																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7979584	7979584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	122	702	1	ENST00000319144.4:c.1441C>A	p.Leu481Ile	p.L481I	ENST00000319144	NM_001139.2	481	Ctc/Atc																																																																														
CDK12	0	MSKCC	GRCh37	17	37618494	37618494	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	126	601	0	ENST00000447079.4:c.174del	p.Glu59LysfsTer33	p.E59Kfs*33	ENST00000447079	NM_015083.1	57	aCc/ac																																																																														
STAT5B	0	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	97	904	0	ENST00000293328.3:c.1101_1102dup	p.Gln368ProfsTer3	p.Q368Pfs*3	ENST00000293328	NM_012448.3	368	cag/cCCag																																																																														
AXIN2	0	MSKCC	GRCh37	17	63530102	63530102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	164	706	1	ENST00000307078.5:c.2333G>A	p.Arg778Gln	p.R778Q	ENST00000307078	NM_004655.3	778	cGg/cAg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532555	63532556	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	118	764	0	ENST00000307078.5:c.2023dupC	p.Arg675ProfsTer32	p.R675Pfs*32	ENST00000307078	NM_004655.3	675	cgt/cCgt																																																																														
TCF3	0	MSKCC	GRCh37	19	1622384	1622384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	159	875	0	ENST00000344749.5:c.580G>A	p.Gly194Ser	p.G194S	ENST00000344749	NM_001136139.2	194	Ggc/Agc																																																																														
INSR	0	MSKCC	GRCh37	19	7119536	7119536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	147	665	1	ENST00000302850.5:c.3718C>A	p.Leu1240Met	p.L1240M	ENST00000302850	NM_000208.2	1240	Ctg/Atg																																																																														
ERF	0	MSKCC	GRCh37	19	42752802	42752802	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	134	820	0	ENST00000222329.4:c.1462T>G	p.Trp488Gly	p.W488G	ENST00000222329	NM_006494.2	488	Tgg/Ggg																																																																														
SOS1	0	MSKCC	GRCh37	2	39213243	39213243	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	160	898	3	ENST00000402219.2:c.3724del	p.Ser1242ValfsTer37	p.S1242Vfs*37	ENST00000402219	NM_005633.3	1242	Agt/gt																																																																														
IRS1	0	MSKCC	GRCh37	2	227661635	227661635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	98	617	0	ENST00000305123.5:c.1820A>G	p.His607Arg	p.H607R	ENST00000305123	NM_005544.2	607	cAc/cGc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024822	31024822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	144	657	0	ENST00000375687.4:c.4307T>C	p.Ile1436Thr	p.I1436T	ENST00000375687	NM_015338.5	1436	aTc/aCc																																																																														
MLH1	0	MSKCC	GRCh37	3	37089053	37089053	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	176	462	0	ENST00000231790.2:c.1775del	p.Ser592IlefsTer24	p.S592Ifs*24	ENST00000231790	NM_000249.3	592	aGt/at																																																																														
PBRM1	0	MSKCC	GRCh37	3	52584655	52584655	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	109	622	0	ENST00000394830.3:c.4360-2A>G		p.X1454_splice	ENST00000394830	NM_018313.4	1454																																																																															
PBRM1	0	MSKCC	GRCh37	3	52662972	52662972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	126	550	3	ENST00000394830.3:c.1381C>T	p.Arg461Cys	p.R461C	ENST00000394830	NM_018313.4	461	Cgc/Tgc																																																																														
MITF	0	MSKCC	GRCh37	3	69928437	69928437	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	125	683	0	ENST00000352241.4:c.257T>C	p.Met86Thr	p.M86T	ENST00000352241	NM_198159.2	86	aTg/aCg																																																																														
ATR	0	MSKCC	GRCh37	3	142279286	142279286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	19	500	0	ENST00000350721.4:c.1360G>A	p.Val454Met	p.V454M	ENST00000350721	NM_001184.3	454	Gtg/Atg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916894	178916894	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	35	754	0	ENST00000263967.3:c.285del	p.Gln96AsnfsTer4	p.Q96Nfs*4	ENST00000263967	NM_006218.2	94	cTt/ct																																																																														
SOX2	0	MSKCC	GRCh37	3	181430482	181430482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	129	711	0	ENST00000325404.1:c.337del	p.Arg113GlyfsTer8	p.R113Gfs*8	ENST00000325404	NM_003106.3	112	Ccc/cc																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182679041	182679042	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	85	586	0	ENST00000292782.4:c.492dup	p.Ala165CysfsTer23	p.A165Cfs*23	ENST00000292782	NM_020640.2	164	-/T																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185169182	185169182	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	85	478	0	ENST00000265026.3:c.1277A>G	p.Gln426Arg	p.Q426R	ENST00000265026	NM_004721.4	426	cAg/cGg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201845	66201845	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	71	465	0	ENST00000273854.3:c.2659-2A>G		p.X887_splice	ENST00000273854	NM_004439.5	887																																																																															
FAT1	0	MSKCC	GRCh37	4	187522545	187522545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	117	609	1	ENST00000441802.2:c.11518G>A	p.Val3840Met	p.V3840M	ENST00000441802	NM_005245.3	3840	Gtg/Atg																																																																														
FAT1	0	MSKCC	GRCh37	4	187539855	187539855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	110	461	1	ENST00000441802.2:c.7885G>A	p.Ala2629Thr	p.A2629T	ENST00000441802	NM_005245.3	2629	Gcc/Acc																																																																														
APC	0	MSKCC	GRCh37	5	112173818	112173818	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	55	431	0	ENST00000257430.4:c.2527A>G	p.Ser843Gly	p.S843G	ENST00000257430	NM_000038.5	843	Agt/Ggt																																																																														
RAD50	0	MSKCC	GRCh37	5	131976379	131976379	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	143	613	0	ENST00000265335.6:c.3634A>G	p.Ile1212Val	p.I1212V	ENST00000265335		1212	Atc/Gtc																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27777973	27777973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	85	529	2	ENST00000369163.2:c.122G>A	p.Arg41His	p.R41H	ENST00000369163	NM_003536.2	41	cGc/cAc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31322976	31322976	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	211	1123	0	ENST00000412585.2:c.920C>A	p.Pro307His	p.P307H	ENST00000412585	NM_005514.6	307	cCc/cAc																																																																														
DAXX	0	MSKCC	GRCh37	6	33286806	33286806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	85	554	1	ENST00000374542.5:c.2131C>A	p.His711Asn	p.H711N	ENST00000374542	NM_001141970.1	711	Cat/Aat																																																																														
PRDM1	0	MSKCC	GRCh37	6	106543584	106543584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	50	323	0	ENST00000369096.4:c.386A>G	p.Asn129Ser	p.N129S	ENST00000369096	NM_001198.3	129	aAc/aGc																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137527329	137527329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	126	715	0	ENST00000367739.4:c.317T>C	p.Val106Ala	p.V106A	ENST00000367739	NM_000416.2	106	gTt/gCt																																																																														
ETV1	0	MSKCC	GRCh37	7	13949301	13949301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	66	349	0	ENST00000405192.2:c.827G>T	p.Arg276Met	p.R276M	ENST00000405192	NM_001163147.1	276	aGg/aTg																																																																														
HGF	0	MSKCC	GRCh37	7	81374358	81374358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	82	459	0	ENST00000222390.5:c.704G>T	p.Trp235Leu	p.W235L	ENST00000222390	NM_000601.4	235	tGg/tTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845684	151845684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	93	651	1	ENST00000262189.6:c.13328A>G	p.Gln4443Arg	p.Q4443R	ENST00000262189	NM_170606.2	4443	cAg/cGg																																																																														
DUSP4	0	MSKCC	GRCh37	8	29194702	29194702	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	164	778	0	ENST00000240100.2:c.1026G>T	p.Glu342Asp	p.E342D	ENST00000240100	NM_001394.6	342	gaG/gaT																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22006077	22006077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	126	606	0	ENST00000276925.6:c.326G>A	p.Arg109His	p.R109H	ENST00000276925	NM_004936.3	109	cGc/cAc																																																																														
RXRA	0	MSKCC	GRCh37	9	137299993	137299993	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	110	557	0	ENST00000481739.1:c.280-2del		p.X94_splice	ENST00000481739	NM_002957.4	94																																																																															
TRAF2	0	MSKCC	GRCh37	9	139793278	139793278	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	147	743	0	ENST00000247668.2:c.86A>G	p.Glu29Gly	p.E29G	ENST00000247668	NM_021138.3	29	gAa/gGa																																																																														
TRAF2	0	MSKCC	GRCh37	9	139811047	139811047	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141070190		P-0023551-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	144	631	3	ENST00000247668.2:c.658G>A	p.Ala220Thr	p.A220T	ENST00000247668	NM_021138.3	220	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0023756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	20	430	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	19	321	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	26	577	1	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67479774	67479774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	20	462	0	ENST00000327367.4:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000327367	NM_005902.3	361	Gag/Aag																																																																														
IDH2	0	MSKCC	GRCh37	15	90631613	90631613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	37	440	0	ENST00000330062.3:c.656T>C	p.Met219Thr	p.M219T	ENST00000330062	NM_002168.2	219	aTg/aCg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934542	9934542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	20	379	0	ENST00000330684.3:c.1613C>T	p.Ser538Leu	p.S538L	ENST00000330684	NM_001134407.1	538	tCa/tTa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575085	48575085	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	15	326	1	ENST00000342988.3:c.279del	p.Ile94SerfsTer16	p.I94Sfs*16	ENST00000342988	NM_005359.5	93	gtG/gt																																																																														
JAK3	0	MSKCC	GRCh37	19	17943433	17943433	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	25	497	0	ENST00000458235.1:c.2575C>G	p.His859Asp	p.H859D	ENST00000458235	NM_000215.3	859	Cac/Gac																																																																														
ARID1B	0	MSKCC	GRCh37	6	157527778	157527778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	15	357	0	ENST00000346085.5:c.5503G>A	p.Glu1835Lys	p.E1835K	ENST00000346085	NM_020732.3	1835	Gag/Aag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443467	49443467	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0023758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	287	255	0	ENST00000301067.7:c.3904C>T	p.Gln1302Ter	p.Q1302*	ENST00000301067	NM_003482.3	1302	Cag/Tag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696637	47696637	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	27	383	0	ENST00000347630.2:c.311T>G	p.Phe104Cys	p.F104C	ENST00000347630	NM_001007230.1	104	tTc/tGc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426940	49426941	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCC			P-0023760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	11	329	0	ENST00000301067.7:c.11544_11547dup	p.His3850GlyfsTer163	p.H3850Gfs*163	ENST00000301067	NM_003482.3	3849	-/GGGA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0023764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	32	227	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0023764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	59	441	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
INSR	0	MSKCC	GRCh37	19	7166282	7166282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	32	391	0	ENST00000302850.5:c.1744G>T	p.Gly582Cys	p.G582C	ENST00000302850	NM_000208.2	582	Ggt/Tgt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831467	72831467	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	103	358	0	ENST00000268489.5:c.5114C>G	p.Ser1705Ter	p.S1705*	ENST00000268489	NM_006885.3	1705	tCa/tGa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	73	118	0	ENST00000324856.7:c.413C>A	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tAa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212295774	212295774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	172	365	0	ENST00000342788.4:c.2539C>T	p.Arg847Cys	p.R847C	ENST00000342788	NM_005235.2	847	Cgt/Tgt																																																																														
AKT3	0	MSKCC	GRCh37	1	243727096	243727096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	140	392	0	ENST00000263826.5:c.874C>G	p.Leu292Val	p.L292V	ENST00000263826	NM_005465.4	292	Ctt/Gtt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	99	387	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874781	151874781	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	11	215	0	ENST00000262189.6:c.7757C>G	p.Ser2586Cys	p.S2586C	ENST00000262189	NM_170606.2	2586	tCt/tGt																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257129	19257129	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023769-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	22	235	0	ENST00000162023.5:c.834G>A	p.Trp278Ter	p.W278*	ENST00000162023		278	tgG/tgA																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	33	268	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24176330	24176330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	74	440	0	ENST00000263121.7:c.1121G>A	p.Arg374Gln	p.R374Q	ENST00000263121	NM_003073.3	374	cGg/cAg																																																																														
CIC	0	MSKCC	GRCh37	19	42791393	42791393	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	125	508	0	ENST00000575354.2:c.452+1G>A		p.X151_splice	ENST00000575354	NM_015125.3	151																																																																															
KMT2C	0	MSKCC	GRCh37	7	151874713	151874713	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	77	357	1	ENST00000262189.6:c.7825C>T	p.Arg2609Ter	p.R2609*	ENST00000262189	NM_170606.2	2609	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578448	7578455	+	frameshift_variant	Frame_Shift_Del	DEL	GCCATGGC	GCCATGGC	-			P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	83	453	0	ENST00000269305.4:c.475_482del	p.Ala159HisfsTer19	p.A159Hfs*19	ENST00000269305	NM_001126112.2	159	GCCATGGCc/c																																																																														
CIC	0	MSKCC	GRCh37	19	42798357	42798357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	46	452	0	ENST00000575354.2:c.4228C>T	p.Pro1410Ser	p.P1410S	ENST00000575354	NM_015125.3	1410	Ccc/Tcc																																																																														
IRS1	0	MSKCC	GRCh37	2	227661632	227661632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	107	408	0	ENST00000305123.5:c.1823C>T	p.Thr608Met	p.T608M	ENST00000305123	NM_005544.2	608	aCg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112111374	112111374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	31	242	0	ENST00000257430.4:c.471G>A	p.Trp157Ter	p.W157*	ENST00000257430	NM_000038.5	157	tgG/tgA																																																																														
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	126	498	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	92	276	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
TSHR	0	MSKCC	GRCh37	14	81609291	81609291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	11	167	0	ENST00000298171.2:c.889G>A	p.Glu297Lys	p.E297K	ENST00000298171	NM_000369.2	297	Gag/Aag																																																																														
EZH1	0	MSKCC	GRCh37	17	40864438	40864438	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139326526		P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	45	617	2	ENST00000428826.2:c.1270G>A	p.Val424Ile	p.V424I	ENST00000428826		424	Gta/Ata																																																																														
KMT2B	0	MSKCC	GRCh37	19	36223419	36223426	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTGGAC	ACCTGGAC	-			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	32	637	0	ENST00000222270.7:c.5969_5976del	p.Asp1990ValfsTer9	p.D1990Vfs*9	ENST00000222270	NM_014727.1	1990	gACCTGGAC/g																																																																														
POLD1	0	MSKCC	GRCh37	19	50920307	50920307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	86	485	0	ENST00000440232.2:c.3073G>A	p.Val1025Met	p.V1025M	ENST00000440232	NM_002691.3	1025	Gtg/Atg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212288958	212288958	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	36	461	0	ENST00000342788.4:c.2788C>G	p.Pro930Ala	p.P930A	ENST00000342788	NM_005235.2	930	Cct/Gct																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091172	29091172	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	53	290	0	ENST00000328354.6:c.1318A>T	p.Ile440Phe	p.I440F	ENST00000328354	NM_007194.3	440	Atc/Ttc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38958821	38958821	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	27	323	0	ENST00000357387.3:c.2291A>C	p.Lys764Thr	p.K764T	ENST00000357387	NM_152756.3	764	aAa/aCa																																																																														
ETV1	0	MSKCC	GRCh37	7	14027791	14027791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	30	308	0	ENST00000405192.2:c.53G>T	p.Arg18Leu	p.R18L	ENST00000405192	NM_001163147.1	18	cGt/cTt																																																																														
AR	0	MSKCC	GRCh37	X	66942777	66942777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	56	525	2	ENST00000374690.3:c.2558G>T	p.Cys853Phe	p.C853F	ENST00000374690	NM_000044.3	853	tGc/tTc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001244-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			403	136	524	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288495	15288495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001244-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			251	77	335	0	ENST00000263388.2:c.4244G>A	p.Gly1415Asp	p.G1415D	ENST00000263388	NM_000435.2	1415	gGc/gAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	350	682	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	205	759	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	282	482	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	102	288	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7577522	7577522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	210	746	0	ENST00000269305.4:c.759del	p.Ile254SerfsTer91	p.I254Sfs*91	ENST00000269305	NM_001126112.2	253	acC/ac																																																																														
BIRC3	0	MSKCC	GRCh37	11	102198862	102198862	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	102	490	0	ENST00000263464.3:c.1032+1G>T		p.X344_splice	ENST00000263464	NM_001165.4	344																																																																															
KDM5C	0	MSKCC	GRCh37	X	53244025	53244025	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	106	681	0	ENST00000375401.3:c.968A>C	p.Glu323Ala	p.E323A	ENST00000375401	NM_004187.3	323	gAg/gCg																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	419	701	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120512269	120512269	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	70	586	0	ENST00000256646.2:c.973G>C	p.Val325Leu	p.V325L	ENST00000256646	NM_024408.3	325	Gta/Cta																																																																														
RTEL1	0	MSKCC	GRCh37	20	62311283	62311283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	75	371	0	ENST00000508582.2:c.1191C>G	p.Ile397Met	p.I397M	ENST00000508582		397	atC/atG																																																																														
PARK2	0	MSKCC	GRCh37	6	162864407	162864407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	52	575	0	ENST00000366898.1:c.106G>T	p.Val36Phe	p.V36F	ENST00000366898	NM_004562.2	36	Gtt/Ttt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	21	622	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0023738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	82	466	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0023738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	82	466	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	138	659	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																																																														
GNAS	0	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	148	472	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0023738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	82	466	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351487	89351487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	56	583	0	ENST00000301030.4:c.1463G>A	p.Ser488Asn	p.S488N	ENST00000301030	NM_001256183.1	488	aGt/aAt																																																																														
INPP4A	0	MSKCC	GRCh37	2	99170737	99170737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	47	360	0	ENST00000074304.5:c.1366C>T	p.Arg456Trp	p.R456W	ENST00000074304	NM_001134224.1	456	Cgg/Tgg																																																																														
EGFR	0	MSKCC	GRCh37	7	55219026	55219026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	133	471	1	ENST00000275493.2:c.599G>T	p.Trp200Leu	p.W200L	ENST00000275493	NM_005228.3	200	tGg/tTg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	162	579	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	23	656	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821373	72821373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	61	421	1	ENST00000268489.5:c.10802C>T	p.Ser3601Leu	p.S3601L	ENST00000268489	NM_006885.3	3601	tCg/tTg																																																																														
JUN	0	MSKCC	GRCh37	1	59248409	59248409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	75	451	1	ENST00000371222.2:c.334G>A	p.Glu112Lys	p.E112K	ENST00000371222	NM_002228.3	112	Gag/Aag																																																																														
NEGR1	0	MSKCC	GRCh37	1	72241878	72241878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	132	422	0	ENST00000357731.5:c.512C>T	p.Ser171Phe	p.S171F	ENST00000357731	NM_173808.2	171	tCt/tTt																																																																														
SLX4	0	MSKCC	GRCh37	16	3658826	3658826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	206	662	1	ENST00000294008.3:c.140C>T	p.Ser47Phe	p.S47F	ENST00000294008	NM_032444.2	47	tCt/tTt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78936282	78936282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	201	631	0	ENST00000306801.3:c.3714C>G	p.Ile1238Met	p.I1238M	ENST00000306801	NM_020761.2	1238	atC/atG																																																																														
STK11	0	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	199	652	0	ENST00000326873.7:c.647C>A	p.Ser216Tyr	p.S216Y	ENST00000326873	NM_000455.4	216	tCc/tAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11135028	11135028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	189	606	0	ENST00000344626.4:c.2995G>A	p.Asp999Asn	p.D999N	ENST00000344626	NM_003072.3	999	Gac/Aac																																																																														
ACVR1	0	MSKCC	GRCh37	2	158594129	158594129	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	165	507	0	ENST00000263640.3:c.1444C>G	p.Pro482Ala	p.P482A	ENST00000263640	NM_001105.4	482	Cca/Gca																																																																														
EP300	0	MSKCC	GRCh37	22	41572932	41572932	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	122	670	0	ENST00000263253.7:c.5217C>G	p.Ile1739Met	p.I1739M	ENST00000263253	NM_001429.3	1739	atC/atG																																																																														
EP300	0	MSKCC	GRCh37	22	41573596	41573596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	101	678	0	ENST00000263253.7:c.5881C>T	p.Pro1961Ser	p.P1961S	ENST00000263253	NM_001429.3	1961	Ccc/Tcc																																																																														
EP300	0	MSKCC	GRCh37	22	41574511	41574511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	88	699	1	ENST00000263253.7:c.6796C>A	p.Gln2266Lys	p.Q2266K	ENST00000263253	NM_001429.3	2266	Cag/Aag																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502437	186502437	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	103	546	0	ENST00000323963.5:c.160G>C	p.Glu54Gln	p.E54Q	ENST00000323963		54	Gag/Cag																																																																														
APC	0	MSKCC	GRCh37	5	112170717	112170717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	174	576	0	ENST00000257430.4:c.1813G>A	p.Asp605Asn	p.D605N	ENST00000257430	NM_000038.5	605	Gat/Aat																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324471	31324471	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	339	507	0	ENST00000412585.2:c.337G>T	p.Glu113Ter	p.E113*	ENST00000412585	NM_005514.6	113	Gag/Tag																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324627	31324627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	314	309	0	ENST00000412585.2:c.181G>C	p.Asp61His	p.D61H	ENST00000412585	NM_005514.6	61	Gac/Cac																																																																														
PTCH1	0	MSKCC	GRCh37	9	98241404	98241404	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023744-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	168	545	0	ENST00000331920.6:c.1093C>T	p.Gln365Ter	p.Q365*	ENST00000331920	NM_000264.3	365	Cag/Tag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	28	675	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
EGFR	0	MSKCC	GRCh37	7	55211008	55211008	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	41	521	1	ENST00000275493.2:c.251A>T	p.Glu84Val	p.E84V	ENST00000275493	NM_005228.3	84	gAg/gTg																																																																														
AKT3	0	MSKCC	GRCh37	1	243777031	243777031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	35	561	0	ENST00000263826.5:c.638A>G	p.Tyr213Cys	p.Y213C	ENST00000263826	NM_005465.4	213	tAt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	29	461	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	57	610	1	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
ELF3	0	MSKCC	GRCh37	1	201982329	201982330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0023746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	70	706	0	ENST00000359651.3:c.709_710dup	p.Gly238ArgfsTer17	p.G238Rfs*17	ENST00000359651		236	-/AA																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426279	49426279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	95	758	1	ENST00000301067.7:c.12209C>T	p.Ser4070Phe	p.S4070F	ENST00000301067	NM_003482.3	4070	tCt/tTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426355	49426355	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	81	842	1	ENST00000301067.7:c.12133C>T	p.Gln4045Ter	p.Q4045*	ENST00000301067	NM_003482.3	4045	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426526	49426526	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	81	736	1	ENST00000301067.7:c.11962C>T	p.Gln3988Ter	p.Q3988*	ENST00000301067	NM_003482.3	3988	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426531	49426531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	79	731	0	ENST00000301067.7:c.11957C>T	p.Ser3986Phe	p.S3986F	ENST00000301067	NM_003482.3	3986	tCt/tTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426595	49426595	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	69	530	2	ENST00000301067.7:c.11893C>T	p.Gln3965Ter	p.Q3965*	ENST00000301067	NM_003482.3	3965	Cag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426751	49426751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	34	258	0	ENST00000301067.7:c.11737C>T	p.Gln3913Ter	p.Q3913*	ENST00000301067	NM_003482.3	3913	Cag/Tag																																																																														
CBFB	0	MSKCC	GRCh37	16	67116176	67116176	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	40	538	0	ENST00000412916.2:c.460G>C	p.Glu154Gln	p.E154Q	ENST00000412916		154	Gaa/Caa																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14628969	14628969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	39	503	0	ENST00000254322.2:c.193G>C	p.Asp65His	p.D65H	ENST00000254322	NM_006145.1	65	Gac/Cac																																																																														
FAT1	0	MSKCC	GRCh37	4	187541890	187541891	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	35	591	0	ENST00000441802.2:c.5849dup	p.Thr1951AsnfsTer3	p.T1951Nfs*3	ENST00000441802	NM_005245.3	1950	cta/ctTa																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27778143	27778143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	48	648	2	ENST00000369163.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000369163	NM_003536.2	98	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0023747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	300	558	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440124	49440124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	237	586	0	ENST00000301067.7:c.4502G>T	p.Cys1501Phe	p.C1501F	ENST00000301067	NM_003482.3	1501	tGt/tTt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15950325	15950325	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	99	723	0	ENST00000268712.3:c.6619T>C	p.Ser2207Pro	p.S2207P	ENST00000268712	NM_006311.3	2207	Tca/Cca																																																																														
INHBA	0	MSKCC	GRCh37	7	41730008	41730008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	79	542	0	ENST00000242208.4:c.521G>A	p.Arg174His	p.R174H	ENST00000242208	NM_002192.2	174	cGc/cAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76763928	76763928	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	73	577	2	ENST00000373344.5:c.7380T>A	p.Tyr2460Ter	p.Y2460*	ENST00000373344	NM_000489.3	2460	taT/taA																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	136	608	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0023751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	205	756	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636818	8636818	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146973770		P-0023751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	131	582	3	ENST00000356435.5:c.91G>A	p.Val31Ile	p.V31I	ENST00000356435		31	Gtt/Att																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032159	10032159	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	137	733	0	ENST00000330684.3:c.664A>T	p.Ile222Phe	p.I222F	ENST00000330684	NM_001134407.1	222	Atc/Ttc																																																																														
RNF43	0	MSKCC	GRCh37	17	56435418	56435418	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	212	700	0	ENST00000407977.2:c.1719del	p.Gly574GlufsTer126	p.G574Efs*126	ENST00000407977		573	acC/ac																																																																														
PTPRD	0	MSKCC	GRCh37	9	8331724	8331724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023751-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	94	448	0	ENST00000356435.5:c.5392C>T	p.Arg1798Ter	p.R1798*	ENST00000356435		1798	Cga/Tga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031915	10031915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	78	847	0	ENST00000330684.3:c.908C>T	p.Ala303Val	p.A303V	ENST00000330684	NM_001134407.1	303	gCa/gTa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72833975	72833975	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	83	711	0	ENST00000268489.5:c.3918del	p.Pro1307GlnfsTer38	p.P1307Qfs*38	ENST00000268489	NM_006885.3	1306	gtT/gt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	53	487	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA																																																																														
GATA3	2625	MSKCC	GRCh37	10	8115852	8115853	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-	rs1085307641		P-0023754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	43	650	0	ENST00000346208.3:c.1198_1199del	p.Met400ValfsTer106	p.M400Vfs*106	ENST00000346208		400	ATg/g																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			509	140	690	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			431	74	731	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
BCOR	0	MSKCC	GRCh37	X	39933575	39933575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			227	68	378	1	ENST00000378444.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000378444	NM_001123385.1	342	Cga/Tga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			676	89	730	0	ENST00000267101.3:c.1166C>A	p.Thr389Lys	p.T389K	ENST00000267101	NM_001982.3	389	aCa/aAa																																																																														
MTOR	0	MSKCC	GRCh37	1	11298048	11298048	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			605	94	876	0	ENST00000361445.4:c.2060T>C	p.Leu687Pro	p.L687P	ENST00000361445	NM_004958.3	687	cTg/cCg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120464370	120464370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			587	74	766	0	ENST00000256646.2:c.5276T>C	p.Val1759Ala	p.V1759A	ENST00000256646	NM_024408.3	1759	gTc/gCc																																																																														
TSHR	0	MSKCC	GRCh37	14	81422058	81422058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			343	72	515	0	ENST00000298171.2:c.34C>A	p.Leu12Met	p.L12M	ENST00000298171	NM_000369.2	12	Ctg/Atg																																																																														
MGA	0	MSKCC	GRCh37	15	42059347	42059347	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			338	34	447	0	ENST00000219905.7:c.9067T>C	p.Ser3023Pro	p.S3023P	ENST00000219905	NM_001164273.1	3023	Tca/Cca																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43730613	43730614	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	A			P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			326	65	515	0	ENST00000382044.4:c.3099dup	p.Pro1034SerfsTer13	p.P1034Sfs*13	ENST00000382044	NM_001141980.1	1033	-/T																																																																														
ERCC4	0	MSKCC	GRCh37	16	14014088	14014088	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			504	72	788	0	ENST00000311895.7:c.67del	p.Val23CysfsTer10	p.V23Cfs*10	ENST00000311895	NM_005236.2	22	ctG/ct																																																																														
CASP8	0	MSKCC	GRCh37	2	202131265	202131265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			415	59	569	0	ENST00000358485.4:c.233T>C	p.Leu78Pro	p.L78P	ENST00000358485	NM_001080125.1	78	cTg/cCg																																																																														
EP300	0	MSKCC	GRCh37	22	41566441	41566441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			432	43	564	1	ENST00000263253.7:c.4318C>A	p.Pro1440Thr	p.P1440T	ENST00000263253	NM_001429.3	1440	Cca/Aca																																																																														
EPHB1	0	MSKCC	GRCh37	3	134977882	134977882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			387	50	596	0	ENST00000398015.3:c.2875G>A	p.Ala959Thr	p.A959T	ENST00000398015	NM_004441.4	959	Gca/Aca																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217252	66217252	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			342	29	500	0	ENST00000273854.3:c.2363T>A	p.Met788Lys	p.M788K	ENST00000273854	NM_004439.5	788	aTg/aAg																																																																														
RASA1	0	MSKCC	GRCh37	5	86670085	86670085	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020610-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			485	58	622	0	ENST00000274376.6:c.1882A>C	p.Thr628Pro	p.T628P	ENST00000274376	NM_002890.2	628	Act/Cct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0023010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	190	444	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
GATA3	0	MSKCC	GRCh37	10	8115711	8115711	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	143	443	0	ENST00000346208.3:c.1060delC	p.Leu354Ter	p.L354*	ENST00000346208		353	Ccc/cc																																																																														
JUN	0	MSKCC	GRCh37	1	59247984	59247984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			528	268	779	0	ENST00000371222.2:c.759C>G	p.Ile253Met	p.I253M	ENST00000371222	NM_002228.3	253	atC/atG																																																																														
CBFB	0	MSKCC	GRCh37	16	67063332	67063332	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			152	188	403	1	ENST00000412916.2:c.22C>T	p.Gln8Ter	p.Q8*	ENST00000412916		8	Cag/Tag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023715-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	72	370	0				ENST00000310581	NM_198253.2																																																																																
TET2	0	MSKCC	GRCh37	4	106196994	106196994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023715-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	37	355	0	ENST00000380013.4:c.5327C>T	p.Ser1776Phe	p.S1776F	ENST00000380013	NM_001127208.2	1776	tCt/tTt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991961	72991961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023715-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			586	31	617	0	ENST00000268489.5:c.2084C>T	p.Pro695Leu	p.P695L	ENST00000268489	NM_006885.3	695	cCg/cTg																																																																														
ATRX	0	MSKCC	GRCh37	X	76855029	76855029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023715-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	10	293	0	ENST00000373344.5:c.5807A>G	p.Lys1936Arg	p.K1936R	ENST00000373344	NM_000489.3	1936	aAg/aGg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81946237	81946237	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023715-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			639	74	671	0	ENST00000359376.3:c.1970A>T	p.Glu657Val	p.E657V	ENST00000359376	NM_002661.3	657	gAg/gTg																																																																														
SOS1	0	MSKCC	GRCh37	2	39213443	39213443	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023715-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			558	184	538	0	ENST00000402219.2:c.3524A>G	p.His1175Arg	p.H1175R	ENST00000402219	NM_005633.3	1175	cAt/cGt																																																																														
TET2	0	MSKCC	GRCh37	4	106156791	106156791	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023715-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			631	64	566	0	ENST00000380013.4:c.1692G>A	p.Trp564Ter	p.W564*	ENST00000380013	NM_001127208.2	564	tgG/tgA																																																																														
ROS1	0	MSKCC	GRCh37	6	117658497	117658497	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023715-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			806	57	714	0	ENST00000368508.3:c.5086T>A	p.Tyr1696Asn	p.Y1696N	ENST00000368508	NM_002944.2	1696	Tac/Aac																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420183	49420183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	246	898	0	ENST00000301067.7:c.15566G>C	p.Gly5189Ala	p.G5189A	ENST00000301067	NM_003482.3	5189	gGa/gCa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420515	49420515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	233	865	1	ENST00000301067.7:c.15234G>T	p.Met5078Ile	p.M5078I	ENST00000301067	NM_003482.3	5078	atG/atT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420619	49420619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	227	877	0	ENST00000301067.7:c.15130G>A	p.Asp5044Asn	p.D5044N	ENST00000301067	NM_003482.3	5044	Gat/Aat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431661	49431662	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	195	985	0	ENST00000301067.7:c.9477dup	p.Met3160HisfsTer16	p.M3160Hfs*16	ENST00000301067	NM_003482.3	3159	-/C																																																																														
MGA	0	MSKCC	GRCh37	15	41988400	41988400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	214	734	0	ENST00000219905.7:c.1192G>A	p.Glu398Lys	p.E398K	ENST00000219905	NM_001164273.1	398	Gaa/Aaa																																																																														
MGA	0	MSKCC	GRCh37	15	41988910	41988910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	199	783	0	ENST00000219905.7:c.1702G>A	p.Asp568Asn	p.D568N	ENST00000219905	NM_001164273.1	568	Gat/Aat																																																																														
MGA	0	MSKCC	GRCh37	15	42059120	42059120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	20	481	0	ENST00000219905.7:c.8840G>T	p.Gly2947Val	p.G2947V	ENST00000219905	NM_001164273.1	2947	gGa/gTa																																																																														
MGA	0	MSKCC	GRCh37	15	42059298	42059298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	22	548	1	ENST00000219905.7:c.9018G>C	p.Gln3006His	p.Q3006H	ENST00000219905	NM_001164273.1	3006	caG/caC																																																																														
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	187	683	1	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740498	58740498	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	243	1019	0	ENST00000305921.3:c.1403C>G	p.Ser468Ter	p.S468*	ENST00000305921	NM_003620.3	468	tCa/tGa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11134277	11134277	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	192	825	0	ENST00000344626.4:c.2943G>C	p.Lys981Asn	p.K981N	ENST00000344626	NM_003072.3	981	aaG/aaC																																																																														
BRD4	0	MSKCC	GRCh37	19	15366951	15366951	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	276	1270	0	ENST00000263377.2:c.1675G>C	p.Glu559Gln	p.E559Q	ENST00000263377	NM_058243.2	559	Gag/Cag																																																																														
MEF2B	0	MSKCC	GRCh37	19	19260220	19260234	+	inframe_deletion	In_Frame_Del	DEL	TCCGCTTGGTGAACG	TCCGCTTGGTGAACG	-			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	228	1008	1	ENST00000162023.5:c.59_73del	p.Thr20_Arg24del	p.T20_R24del	ENST00000162023		20	aCGTTCACCAAGCGGAag/aag																																																																														
MSH6	0	MSKCC	GRCh37	2	48010526	48010526	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	23	493	0	ENST00000234420.5:c.154G>T	p.Glu52Ter	p.E52*	ENST00000234420	NM_000179.2	52	Gag/Tag																																																																														
EP300	0	MSKCC	GRCh37	22	41556696	41556696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	248	803	0	ENST00000263253.7:c.3641C>T	p.Ser1214Phe	p.S1214F	ENST00000263253	NM_001429.3	1214	tCt/tTt																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	218	739	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
FAT1	0	MSKCC	GRCh37	4	187518251	187518251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	114	425	0	ENST00000441802.2:c.12443C>G	p.Ser4148Cys	p.S4148C	ENST00000441802	NM_005245.3	4148	tCc/tGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	106	592	0				ENST00000310581	NM_198253.2																																																																																
PLK2	0	MSKCC	GRCh37	5	57753342	57753342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	209	779	0	ENST00000274289.3:c.782C>T	p.Ser261Leu	p.S261L	ENST00000274289	NM_006622.3	261	tCa/tTa																																																																														
TSC1	0	MSKCC	GRCh37	9	135797301	135797301	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	30	460	0	ENST00000298552.3:c.568del	p.Arg190AlafsTer20	p.R190Afs*20	ENST00000298552	NM_001162426.1	190	Cgc/gc																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0023718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	514	972	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
JAK1	0	MSKCC	GRCh37	1	65325894	65325894	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	202	568	0	ENST00000342505.4:c.1228G>C	p.Asp410His	p.D410H	ENST00000342505	NM_002227.2	410	Gat/Cat																																																																														
BRCA1	0	MSKCC	GRCh37	17	41201203	41201203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	79	823	0	ENST00000357654.3:c.5341G>C	p.Glu1781Gln	p.E1781Q	ENST00000357654	NM_007294.3	1781	Gaa/Caa																																																																														
JAK2	0	MSKCC	GRCh37	9	5065009	5065009	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	79	500	0	ENST00000381652.3:c.1183A>G	p.Asn395Asp	p.N395D	ENST00000381652	NM_004972.3	395	Aat/Gat																																																																														
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	228	853	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984819	11984824	+	frameshift_variant	Frame_Shift_Del	DEL	AACCAA	AACCAA	TATG			P-0023720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	75	587	1	ENST00000353533.5:c.365_370delinsTATG	p.Lys122IlefsTer9	p.K122Ifs*9	ENST00000353533	NM_003010.3	122	aAACCAAgt/aTATGgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	70	824	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577118	7577119	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	115	910	0	ENST00000269305.4:c.819dup	p.Val274CysfsTer32	p.V274Cfs*32	ENST00000269305	NM_001126112.2	273	-/T																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	155	899	1	ENST00000267101.3:c.273G>T	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atT																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137348	64137348	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	65	909	0	ENST00000334205.4:c.1780A>C	p.Ser594Arg	p.S594R	ENST00000334205	NM_003942.2	594	Agc/Cgc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11100088	11100095	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCCCTC	AGGCCCTC	-			P-0023721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	103	801	0	ENST00000344626.4:c.1218_1225del	p.Leu407AlafsTer28	p.L407Afs*28	ENST00000344626	NM_003072.3	405	aAGGCCCTC/a																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401176	139401176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	52	797	3	ENST00000277541.6:c.3893G>T	p.Gly1298Val	p.G1298V	ENST00000277541	NM_017617.3	1298	gGt/gTt																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0023722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	17	68	2	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
IDH2	0	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	139	712	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100096	27100096	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	68	749	0	ENST00000324856.7:c.3892G>T	p.Gly1298Ter	p.G1298*	ENST00000324856	NM_006015.4	1298	Gga/Tga																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349814	89349814	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023722-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	212	1177	0	ENST00000301030.4:c.3136T>G	p.Cys1046Gly	p.C1046G	ENST00000301030	NM_001256183.1	1046	Tgt/Ggt																																																																														
DAXX	0	MSKCC	GRCh37	6	33289234	33289234	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	251	475	0	ENST00000374542.5:c.318C>A	p.Cys106Ter	p.C106*	ENST00000374542	NM_001141970.1	106	tgC/tgA																																																																														
MEN1	0	MSKCC	GRCh37	11	64572290	64572290	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0023732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	313	608	0	ENST00000337652.1:c.1366-2A>T		p.X456_splice	ENST00000337652	NM_130803.2	456																																																																															
MET	0	MSKCC	GRCh37	7	116399446	116399446	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	236	603	1	ENST00000397752.3:c.2266G>T	p.Gly756Cys	p.G756C	ENST00000397752	NM_000245.2	756	Ggt/Tgt																																																																														
IL10	0	MSKCC	GRCh37	1	206944256	206944256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	87	383	4	ENST00000423557.1:c.374G>A	p.Arg125His	p.R125H	ENST00000423557	NM_000572.2	125	cGc/cAc																																																																														
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1317	159	295	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																																																														
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	873	234	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																														
NF1	0	MSKCC	GRCh37	17	29554278	29554278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	137	530	0	ENST00000358273.4:c.2294G>A	p.Arg765His	p.R765H	ENST00000358273	NM_001042492.2	765	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	181	668	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151949157	151949157	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	145	565	0	ENST00000262189.6:c.1488T>A	p.Cys496Ter	p.C496*	ENST00000262189	NM_170606.2	496	tgT/tgA																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484285	8484286	+	missense_variant	Missense_Mutation	DNP	AT	AT	TC			P-0023741-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	148	520	0	ENST00000356435.5:c.3246_3247delinsGA	p.Phe1083Ile	p.F1083I	ENST00000356435		1082	tcATtt/tcGAtt																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	138	407	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
FLT3	0	MSKCC	GRCh37	13	28626716	28626716	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146030737		P-0023789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	32	341	1	ENST00000241453.7:c.580G>A	p.Val194Met	p.V194M	ENST00000241453	NM_004119.2	194	Gtg/Atg																																																																														
PRKCI	0	MSKCC	GRCh37	3	169953127	169953127	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	85	299	0	ENST00000295797.4:c.211A>C	p.Ile71Leu	p.I71L	ENST00000295797	NM_002740.5	71	Ata/Cta																																																																														
APC	0	MSKCC	GRCh37	5	112175189	112175189	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	39	160	0	ENST00000257430.4:c.3899del	p.Asn1300IlefsTer5	p.N1300Ifs*5	ENST00000257430	NM_000038.5	1300	Aat/at																																																																														
ESR1	0	MSKCC	GRCh37	6	152129156	152129156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	103	400	0	ENST00000206249.3:c.109C>T	p.Arg37Trp	p.R37W	ENST00000206249	NM_000125.3	37	Cgg/Tgg																																																																														
KMT2C	0	MSKCC	GRCh37	7	152055678	152055679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0023789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	106	429	0	ENST00000262189.6:c.242_243dup	p.Glu82TrpfsTer24	p.E82Wfs*24	ENST00000262189	NM_170606.2	81	-/TG																																																																														
SYK	0	MSKCC	GRCh37	9	93624612	93624612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023789-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	152	272	0	ENST00000375746.1:c.703G>A	p.Asp235Asn	p.D235N	ENST00000375746	NM_001174167.1	235	Gac/Aac																																																																														
MGA	0	MSKCC	GRCh37	15	42042245	42042245	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	36	281	0	ENST00000219905.7:c.6441del	p.Met2148TrpfsTer31	p.M2148Wfs*31	ENST00000219905	NM_001164273.1	2147	gTt/gt																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578404	+	missense_variant	Missense_Mutation	DNP	CA	CA	AC			P-0023792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	27	375	0	ENST00000269305.4:c.526_527delinsGT	p.Cys176Val	p.C176V	ENST00000269305	NM_001126112.2	176	TGc/GTc																																																																														
SOX2	0	MSKCC	GRCh37	3	181431019	181431019	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	21	383	1	ENST00000325404.1:c.871A>T	p.Arg291Ter	p.R291*	ENST00000325404	NM_003106.3	291	Aga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0023795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	22	326	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	24	303	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	24	303	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	24	303	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48581201	48581201	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	16	256	1	ENST00000342988.3:c.505C>T	p.Gln169Ter	p.Q169*	ENST00000342988	NM_005359.5	169	Cag/Tag																																																																														
GATA3	0	MSKCC	GRCh37	10	8115973	8115974	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0023797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	12	242	0	ENST00000346208.3:c.1319_1320del	p.Thr440SerfsTer66	p.T440Sfs*66	ENST00000346208		440	aCC/a																																																																														
DIS3	0	MSKCC	GRCh37	13	73336157	73336157	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	12	225	0	ENST00000377767.4:c.2246T>C	p.Met749Thr	p.M749T	ENST00000377767	NM_014953.3	749	aTg/aCg																																																																														
DICER1	0	MSKCC	GRCh37	14	95570416	95570416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	17	234	0	ENST00000343455.3:c.3317C>T	p.Ser1106Phe	p.S1106F	ENST00000343455	NM_177438.2	1106	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	48	333	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578219	7578220	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	110	354	0	ENST00000269305.4:c.629dup	p.Asn210LysfsTer6	p.N210Kfs*6	ENST00000269305	NM_001126112.2	210	aac/aaAc																																																																														
ELF3	0	MSKCC	GRCh37	1	201981300	201981300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	99	308	1	ENST00000359651.3:c.379G>A	p.Asp127Asn	p.D127N	ENST00000359651		127	Gac/Aac																																																																														
FLT1	0	MSKCC	GRCh37	13	28895619	28895619	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	81	273	0	ENST00000282397.4:c.3155A>G	p.Asp1052Gly	p.D1052G	ENST00000282397	NM_002019.4	1052	gAt/gGt																																																																														
RB1	0	MSKCC	GRCh37	13	48955499	48955499	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	31	245	0	ENST00000267163.4:c.1615G>T	p.Glu539Ter	p.E539*	ENST00000267163	NM_000321.2	539	Gaa/Taa																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0006602-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			196	236	318	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63845529	63845529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006602-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			249	262	360	2	ENST00000279873.7:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000279873	NM_032199.2	423	cGg/cAg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906663	32906663	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006602-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			709	156	428	0	ENST00000380152.3:c.1048G>C	p.Glu350Gln	p.E350Q	ENST00000380152		350	Gaa/Caa																																																																														
STAT3	0	MSKCC	GRCh37	17	40489543	40489544	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAGAGTTTTC			P-0006602-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			115	248	580	0	ENST00000264657.5:c.696_706dup	p.Thr236ArgfsTer29	p.T236Rfs*29	ENST00000264657	NM_139276.2	236	acg/aGAAAACTCTCAcg																																																																														
SOS1	0	MSKCC	GRCh37	2	39239300	39239300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006602-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			363	297	604	0	ENST00000402219.2:c.2357G>A	p.Arg786Gln	p.R786Q	ENST00000402219	NM_005633.3	786	cGa/cAa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			335	147	684	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																																																														
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			179	311	705	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22006194	22006194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			195	217	606	0	ENST00000276925.6:c.209C>T	p.Ala70Val	p.A70V	ENST00000276925	NM_004936.3	70	gCg/gTg																																																																														
APC	0	MSKCC	GRCh37	5	112164585	112164585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			125	152	418	0	ENST00000257430.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tgG/tgA																																																																														
HIST1H3C	0	MSKCC	GRCh37	6	26045946	26045946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			617	142	600	0	ENST00000540144.1:c.308G>T	p.Gly103Val	p.G103V	ENST00000540144	NM_003531.2	103	gGa/gTa																																																																														
CARD11	0	MSKCC	GRCh37	7	2952986	2952986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			484	369	717	0	ENST00000396946.4:c.2954C>G	p.Ala985Gly	p.A985G	ENST00000396946	NM_032415.4	985	gCc/gGc																																																																														
BRAF	0	MSKCC	GRCh37	7	140501331	140501331	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			287	164	322	0	ENST00000288602.6:c.741T>A	p.Phe247Leu	p.F247L	ENST00000288602	NM_004333.4	247	ttT/ttA																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920396	114920396	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			447	123	548	0	ENST00000543371.1:c.1337A>C	p.Lys446Thr	p.K446T	ENST00000543371	NM_001198531.1	446	aAg/aCg																																																																														
MGA	0	MSKCC	GRCh37	15	42052630	42052630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			271	267	627	0	ENST00000219905.7:c.7301G>A	p.Arg2434Gln	p.R2434Q	ENST00000219905	NM_001164273.1	2434	cGg/cAg																																																																														
PALB2	0	MSKCC	GRCh37	16	23646234	23646234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			175	350	669	1	ENST00000261584.4:c.1633G>T	p.Glu545Ter	p.E545*	ENST00000261584	NM_024675.3	545	Gaa/Taa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581186	48581204	+	frameshift_variant	Frame_Shift_Del	DEL	CATGACTTTGAGGGACAGC	CATGACTTTGAGGGACAGC	-			P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			130	199	452	0	ENST00000342988.3:c.493_511del	p.Asp165ArgfsTer31	p.D165Rfs*31	ENST00000342988	NM_005359.5	164	CATGACTTTGAGGGACAGCca/ca																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221647	36221647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			569	163	752	3	ENST00000222270.7:c.5316G>T	p.Arg1772Ser	p.R1772S	ENST00000222270	NM_014727.1	1772	agG/agT																																																																														
PREX2	0	MSKCC	GRCh37	8	68930154	68930154	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			295	276	439	0	ENST00000288368.4:c.213+2T>C		p.X71_splice	ENST00000288368	NM_024870.2	71																																																																															
MAPKAP1	0	MSKCC	GRCh37	9	128206802	128206802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008083-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			150	229	562	0	ENST00000265960.3:c.1421C>T	p.Thr474Ile	p.T474I	ENST00000265960	NM_001006617.1	474	aCc/aTc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008346-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			110	495	591	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
SH2B3	0	MSKCC	GRCh37	12	111884952	111884952	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008346-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			438	246	707	0	ENST00000341259.2:c.950T>C	p.Met317Thr	p.M317T	ENST00000341259	NM_005475.2	317	aTg/aCg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061137	38061161	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCCGCTTCCGCTCCCGCCCCCG	GCCCCCGCTTCCGCTCCCGCCCCCG	-			P-0008346-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			156	153	374	0	ENST00000250448.2:c.828_852delCGGGGGCGGGAGCGGAAGCGGGGGC	p.Gly277AlafsTer36	p.G277Afs*36	ENST00000250448	NM_004496.3	276	ggCGGGGGCGGGAGCGGAAGCGGGGGC/gg																																																																														
RB1	0	MSKCC	GRCh37	13	48954334	48954335	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0008346-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			148	243	567	0	ENST00000267163.4:c.1456_1457delTT	p.Leu486IlefsTer6	p.L486Ifs*6	ENST00000267163	NM_000321.2	485	tcTTta/tcta																																																																														
NCOR1	0	MSKCC	GRCh37	17	16004609	16004609	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008346-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			137	321	722	0	ENST00000268712.3:c.2645delC	p.Thr882SerfsTer27	p.T882Sfs*27	ENST00000268712	NM_006311.3	882	aCg/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7579403	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	GATGACAG	GATGACAG	-			P-0008346-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			132	361	836	0	ENST00000269305.4:c.277_284delCTGTCATC	p.Leu93PhefsTer53	p.L93Ffs*53	ENST00000269305	NM_001126112.2	93	CTGTCATCt/t																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0012520-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			161	103	408	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0012520-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	218	537	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15299833	15299833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012520-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			503	38	530	0	ENST00000263388.2:c.1345C>T	p.Arg449Cys	p.R449C	ENST00000263388	NM_000435.2	449	Cgc/Tgc																																																																														
RBM10	0	MSKCC	GRCh37	X	47044941	47044941	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012520-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	282	630	0	ENST00000329236.7:c.2033G>A	p.Trp678Ter	p.W678*	ENST00000329236	NM_001204466.1	678	tGg/tAg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696448	47696448	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015925-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	515	623	0	ENST00000347630.2:c.375T>G	p.Phe125Leu	p.F125L	ENST00000347630	NM_001007230.1	125	ttT/ttG																																																																														
STK19	0	MSKCC	GRCh37	6	31940490	31940490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015925-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			551	273	709	0	ENST00000375331.2:c.523G>C	p.Val175Leu	p.V175L	ENST00000375331	NM_004197.1	175	Gtg/Ctg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	44	513	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SDHAF2	0	MSKCC	GRCh37	11	61197647	61197647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	41	518	0	ENST00000301761.2:c.29C>T	p.Ser10Leu	p.S10L	ENST00000301761	NM_017841.2	10	tCg/tTg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56179502	56179502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	50	300	0	ENST00000399503.3:c.3815A>C	p.Lys1272Thr	p.K1272T	ENST00000399503	NM_005921.1	1272	aAa/aCa																																																																														
SLX4	0	MSKCC	GRCh37	16	3658883	3658883	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	56	630	0	ENST00000294008.3:c.83del	p.Pro28LeufsTer16	p.P28Lfs*16	ENST00000294008	NM_032444.2	28	cCt/ct																																																																														
CDH1	0	MSKCC	GRCh37	16	68835700	68835701	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	46	623	0	ENST00000261769.5:c.292_293del	p.Phe98LeufsTer69	p.F98Lfs*69	ENST00000261769	NM_004360.3	97	caTTtc/catc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44923045	44923046	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	58	708	0	ENST00000377967.4:c.1907dup	p.Ser637IlefsTer2	p.S637Ifs*2	ENST00000377967	NM_021140.2	636	cta/cTta																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178080	56178082	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	T			P-0023601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	22	344	0	ENST00000399503.3:c.3053_3055delinsT	p.Ser1018PhefsTer17	p.S1018Ffs*17	ENST00000399503	NM_005921.1	1018	tCTCct/tTct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	149	668	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SETD2	0	MSKCC	GRCh37	3	47165077	47165078	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	115	377	0	ENST00000409792.3:c.1048_1049del	p.Asp350PhefsTer2	p.D350Ffs*2	ENST00000409792	NM_014159.6	350	GAt/t																																																																														
SPEN	0	MSKCC	GRCh37	1	16260596	16260596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	36	688	1	ENST00000375759.3:c.7861G>T	p.Val2621Phe	p.V2621F	ENST00000375759	NM_015001.2	2621	Gtt/Ttt																																																																														
ELF3	0	MSKCC	GRCh37	1	201981136	201981143	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGGAC	TTCTGGAC	-			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	318	627	0	ENST00000359651.3:c.216_223del	p.Leu73AspfsTer16	p.L73Dfs*16	ENST00000359651		72	gTTCTGGAC/g																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281275	49281275	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200289548		P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	117	726	0	ENST00000282018.3:c.322G>A	p.Asp108Asn	p.D108N	ENST00000282018	NM_020377.2	108	Gac/Aac																																																																														
MAX	0	MSKCC	GRCh37	14	65560488	65560488	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	114	579	1	ENST00000358664.4:c.109del	p.Asp37ThrfsTer28	p.D37Tfs*28	ENST00000358664	NM_002382.4	37	Gac/ac																																																																														
PTPRT	0	MSKCC	GRCh37	20	40757458	40757458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	101	682	1	ENST00000373198.4:c.2840G>A	p.Arg947Gln	p.R947Q	ENST00000373198	NM_133170.3	947	cGg/cAg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252877	36252877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	19	478	1	ENST00000300305.3:c.485G>T	p.Arg162Met	p.R162M	ENST00000300305		162	aGg/aTg																																																																														
KIT	0	MSKCC	GRCh37	4	55602977	55602977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023602-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	106	382	0	ENST00000288135.5:c.2687C>G	p.Pro896Arg	p.P896R	ENST00000288135	NM_000222.2	896	cCt/cGt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99440132	99440132	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	57	361	0	ENST00000268035.6:c.1100G>A	p.Gly367Glu	p.G367E	ENST00000268035	NM_000875.3	367	gGg/gAg																																																																														
AKT2	0	MSKCC	GRCh37	19	40743901	40743901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	78	563	0	ENST00000392038.2:c.806G>A	p.Arg269Gln	p.R269Q	ENST00000392038	NM_001626.4	269	cGg/cAg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156848975	156849006	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCTGGGGCAGCTGCTGGCCGTGGCTAGCCA	GGTCTGGGGCAGCTGCTGGCCGTGGCTAGCCA	-			P-0023605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	90	583	0	ENST00000524377.1:c.1871_1902del	p.Leu624ArgfsTer34	p.L624Rfs*34	ENST00000524377	NM_002529.3	623	GGTCTGGGGCAGCTGCTGGCCGTGGCTAGCCAg/g																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149497383	149497383	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	69	455	0	ENST00000261799.4:c.2935A>T	p.Arg979Trp	p.R979W	ENST00000261799	NM_002609.3	979	Agg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	203	504	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0023606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	302	629	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
EP300	0	MSKCC	GRCh37	22	41556727	41556727	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0023606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	190	453	1	ENST00000263253.7:c.3671+1G>A		p.X1224_splice	ENST00000263253	NM_001429.3	1224																																																																															
KDM6A	0	MSKCC	GRCh37	X	44833933	44833933	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	301	354	0	ENST00000377967.4:c.357C>G	p.Tyr119Ter	p.Y119*	ENST00000377967	NM_021140.2	119	taC/taG																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023608-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	113	538	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
BAP1	0	MSKCC	GRCh37	3	52438481	52438482	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCGGA			P-0023612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	216	497	0	ENST00000460680.1:c.1237_1238insTCCGA	p.Asn413IlefsTer19	p.N413Ifs*19	ENST00000460680	NM_004656.3	413	aac/aTCCGAac																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449820	149449820	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	62	700	0	ENST00000286301.3:c.1244G>C	p.Gly415Ala	p.G415A	ENST00000286301	NM_005211.3	415	gGc/gCc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692920	89692921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	22	572	0	ENST00000371953.3:c.405dupA	p.Cys136MetfsTer44	p.C136Mfs*44	ENST00000371953	NM_000314.4	135	ata/atAa																																																																														
GLI1	0	MSKCC	GRCh37	12	57859427	57859427	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151317566		P-0023625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	85	664	0	ENST00000228682.2:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000228682	NM_005269.2	191	cGg/cAg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670711	134670711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	83	673	0	ENST00000398015.3:c.622G>T	p.Glu208Ter	p.E208*	ENST00000398015	NM_004441.4	208	Gag/Tag																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	10	383	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	268	594	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	76	313	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																																																														
SETD2	0	MSKCC	GRCh37	3	47164447	47164447	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	170	452	0	ENST00000409792.3:c.1679C>G	p.Ser560Ter	p.S560*	ENST00000409792	NM_014159.6	560	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7579398	7579398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	253	721	1	ENST00000269305.4:c.289G>T	p.Val97Phe	p.V97F	ENST00000269305	NM_001126112.2	97	Gtc/Ttc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2213552	2213561	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCTGGGT	GCTCCTGGGT	-			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	224	692	0	ENST00000398665.3:c.1574_1583del	p.Leu525ArgfsTer29	p.L525Rfs*29	ENST00000398665	NM_032482.2	524	caGCTCCTGGGT/ca																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610576	10610576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	244	688	0	ENST00000171111.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000171111	NM_203500.1	45	tCc/tTc																																																																														
IRS1	0	MSKCC	GRCh37	2	227659802	227659802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	126	362	0	ENST00000305123.5:c.3653C>T	p.Ser1218Phe	p.S1218F	ENST00000305123	NM_005544.2	1218	tCc/tTc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259390	36259390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	202	575	0	ENST00000300305.3:c.101C>G	p.Ala34Gly	p.A34G	ENST00000300305		34	gCc/gGc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636842	8636842	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	161	439	1	ENST00000356435.5:c.67C>T	p.Pro23Ser	p.P23S	ENST00000356435		23	Cct/Tct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	172	694	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
FYN	0	MSKCC	GRCh37	6	111983093	111983093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	161	701	0	ENST00000368678.4:c.1454C>T	p.Pro485Leu	p.P485L	ENST00000368678		485	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	150	791	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729888	41729888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	164	528	0	ENST00000242208.4:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000242208	NM_002192.2	214	cGg/cAg																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149516600	149516600	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs144923639		P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	153	730	0	ENST00000261799.4:c.11C>A	p.Pro4Gln	p.P4Q	ENST00000261799	NM_002609.3	4	cCg/cAg																																																																														
EPHA7	0	MSKCC	GRCh37	6	93964483	93964483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	148	675	1	ENST00000369303.4:c.2414C>T	p.Pro805Leu	p.P805L	ENST00000369303	NM_004440.3	805	cCc/cTc																																																																														
FGF19	0	MSKCC	GRCh37	11	69514211	69514211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	140	745	2	ENST00000294312.3:c.470G>A	p.Arg157Lys	p.R157K	ENST00000294312	NM_005117.2	157	aGa/aAa																																																																														
FLT1	0	MSKCC	GRCh37	13	28886150	28886150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	36	587	1	ENST00000282397.4:c.3472C>A	p.Leu1158Ile	p.L1158I	ENST00000282397	NM_002019.4	1158	Ctt/Att																																																																														
MGA	0	MSKCC	GRCh37	15	42057123	42057133	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTTGTGATG	ACCTTGTGATG	-			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	42	780	0	ENST00000219905.7:c.7786_7796del	p.Leu2596SerfsTer23	p.L2596Sfs*23	ENST00000219905	NM_001164273.1	2595	aACCTTGTGATG/a																																																																														
TSC2	0	MSKCC	GRCh37	16	2106644	2106644	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	48	677	0	ENST00000219476.3:c.649-1G>A		p.X217_splice	ENST00000219476	NM_000548.3	217																																																																															
AKT2	0	MSKCC	GRCh37	19	40741932	40741932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202125073		P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	100	817	2	ENST00000392038.2:c.1040G>A	p.Arg347His	p.R347H	ENST00000392038	NM_001626.4	347	cGc/cAc																																																																														
ALK	0	MSKCC	GRCh37	2	30143461	30143461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	51	454	0	ENST00000389048.3:c.65G>T	p.Gly22Val	p.G22V	ENST00000389048	NM_004304.4	22	gGg/gTg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89448570	89448570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	252	642	0	ENST00000336596.2:c.1534C>G	p.Arg512Gly	p.R512G	ENST00000336596	NM_005233.5	512	Cga/Gga																																																																														
EIF4E	0	MSKCC	GRCh37	4	99823121	99823121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	61	450	0	ENST00000280892.6:c.91A>T	p.Thr31Ser	p.T31S	ENST00000280892	NM_001130678.1	31	Act/Tct																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149513542	149513542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	53	644	0	ENST00000261799.4:c.661G>T	p.Val221Leu	p.V221L	ENST00000261799	NM_002609.3	221	Gtg/Ttg																																																																														
EGFR	0	MSKCC	GRCh37	7	55273091	55273091	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	84	650	0	ENST00000275493.2:c.3414T>G	p.Tyr1138Ter	p.Y1138*	ENST00000275493	NM_005228.3	1138	taT/taG																																																																														
MET	0	MSKCC	GRCh37	7	116339792	116339792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	162	501	2	ENST00000397752.3:c.654G>T	p.Arg218Ser	p.R218S	ENST00000397752	NM_000245.2	218	agG/agT																																																																														
TEK	0	MSKCC	GRCh37	9	27180363	27180363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	105	422	1	ENST00000380036.4:c.1027G>A	p.Glu343Lys	p.E343K	ENST00000380036	NM_000459.3	343	Gaa/Aaa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139404296	139404296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	85	787	0	ENST00000277541.6:c.2858C>T	p.Pro953Leu	p.P953L	ENST00000277541	NM_017617.3	953	cCc/cTc																																																																														
BCOR	0	MSKCC	GRCh37	X	39922978	39922978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	63	736	0	ENST00000378444.4:c.3730G>A	p.Glu1244Lys	p.E1244K	ENST00000378444	NM_001123385.1	1244	Gag/Aag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151842368	151842368	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	28	267	1	ENST00000262189.6:c.14044G>T	p.Glu4682Ter	p.E4682*	ENST00000262189	NM_170606.2	4682	Gag/Tag																																																																														
MTOR	0	MSKCC	GRCh37	1	11301653	11301653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	115	717	0	ENST00000361445.4:c.1498G>A	p.Asp500Asn	p.D500N	ENST00000361445	NM_004958.3	500	Gat/Aat																																																																														
KDM5A	0	MSKCC	GRCh37	12	406354	406354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	136	575	0	ENST00000399788.2:c.4087G>A	p.Val1363Met	p.V1363M	ENST00000399788	NM_001042603.1	1363	Gtg/Atg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88679129	88679129	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0023661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	58	365	0	ENST00000360948.2:c.907+1G>C		p.X303_splice	ENST00000360948	NM_001012338.2	303																																																																															
GRIN2A	0	MSKCC	GRCh37	16	9923294	9923294	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	94	626	0	ENST00000330684.3:c.1993C>G	p.Leu665Val	p.L665V	ENST00000330684	NM_001134407.1	665	Ctc/Gtc																																																																														
TP53	0	MSKCC	GRCh37	17	7576922	7576923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGTG			P-0023661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	116	703	0	ENST00000269305.4:c.920_923dup	p.Pro309ThrfsTer29	p.P309Tfs*29	ENST00000269305	NM_001126112.2	308	ctg/ctCACTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	152132786	152132786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	128	615	0	ENST00000262189.6:c.86C>T	p.Pro29Leu	p.P29L	ENST00000262189	NM_170606.2	29	cCc/cTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720737	89720737	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			18	12	124	0	ENST00000371953.3:c.888T>A	p.Cys296Ter	p.C296*	ENST00000371953	NM_000314.4	296	tgT/tgA																																																																														
CDH1	0	MSKCC	GRCh37	16	68772239	68772239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	275	721	1	ENST00000261769.5:c.88C>T	p.Pro30Ser	p.P30S	ENST00000261769	NM_004360.3	30	Cct/Tct																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0023664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	93	752	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50480092	50480092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	20	482	0	ENST00000394963.4:c.326A>C	p.Gln109Pro	p.Q109P	ENST00000394963	NM_003076.4	109	cAg/cCg																																																																														
UPF1	0	MSKCC	GRCh37	19	18968148	18968148	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	26	525	0	ENST00000262803.5:c.1988A>C	p.His663Pro	p.H663P	ENST00000262803	NM_002911.3	663	cAc/cCc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46267781	46267781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	21	502	0	ENST00000371998.3:c.2542A>G	p.Ile848Val	p.I848V	ENST00000371998		848	Att/Gtt																																																																														
ASXL2	0	MSKCC	GRCh37	2	25982440	25982440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	113	424	0	ENST00000435504.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000435504		284	Cga/Tga																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43730535	43730536	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	107	453	0	ENST00000382044.4:c.3177dup	p.Thr1060HisfsTer26	p.T1060Hfs*26	ENST00000382044	NM_001141980.1	1059	-/C																																																																														
ERBB2	0	MSKCC	GRCh37	17	37871776	37871776	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	174	727	0	ENST00000269571.5:c.1300C>T	p.Arg434Ter	p.R434*	ENST00000269571		434	Cga/Tga																																																																														
MLH1	0	MSKCC	GRCh37	3	37089016	37089016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	69	285	0	ENST00000231790.2:c.1738G>A	p.Ala580Thr	p.A580T	ENST00000231790	NM_000249.3	580	Gca/Aca																																																																														
RXRA	0	MSKCC	GRCh37	9	137328441	137328441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	199	721	1	ENST00000481739.1:c.1370C>T	p.Ala457Val	p.A457V	ENST00000481739	NM_002957.4	457	gCg/gTg																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	83	425	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	95	368	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0023667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	11	26	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916944	178916946	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0023667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	73	405	0	ENST00000263967.3:c.332_334delAGA	p.Lys111del	p.K111del	ENST00000263967	NM_006218.2	111	AAG/-																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0023667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	109	440	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67654643	67654643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	170	509	1	ENST00000264010.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000264010	NM_006565.3	377	cGt/cAt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692792	89692792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	65	364	0	ENST00000371953.3:c.276C>A	p.Asp92Glu	p.D92E	ENST00000371953	NM_000314.4	92	gaC/gaA																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12044470	12044470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	76	267	0	ENST00000353533.5:c.1093C>T	p.Pro365Ser	p.P365S	ENST00000353533	NM_003010.3	365	Ccc/Tcc																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839984	27839984	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	169	525	0	ENST00000328488.2:c.110A>T	p.Lys37Met	p.K37M	ENST00000328488	NM_003533.2	37	aAg/aTg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11170537	11170537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	228	607	0	ENST00000344626.4:c.4744G>A	p.Glu1582Lys	p.E1582K	ENST00000344626	NM_003072.3	1582	Gag/Aag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929302	44929302	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	172	669	0	ENST00000377967.4:c.2402A>G	p.Asn801Ser	p.N801S	ENST00000377967	NM_021140.2	801	aAt/aGt																																																																														
RBM10	0	MSKCC	GRCh37	X	47004903	47004903	+	intron_variant	Intron	SNP	C	C	T			P-0023667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	149	445	0	ENST00000377604.3:c.-126+19C>T		p.*42*	ENST00000377604	NM_001204468.1																																																																																
ERCC5	0	MSKCC	GRCh37	13	103518193	103518193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	63	264	0	ENST00000355739.4:c.2131G>T	p.Asp711Tyr	p.D711Y	ENST00000355739	NM_000123.3	711	Gat/Tat																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187300	38187301	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	117	578	0	ENST00000317025.8:c.1176dup	p.Ile393TyrfsTer4	p.I393Yfs*4	ENST00000317025	NM_023034.1	392	-/T																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	135	782	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	63	781	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15291504	15291504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	42	665	3	ENST00000263388.2:c.3130G>A	p.Ala1044Thr	p.A1044T	ENST00000263388	NM_000435.2	1044	Gca/Aca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860499	151860499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023671-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	59	843	1	ENST00000262189.6:c.10163A>G	p.Asn3388Ser	p.N3388S	ENST00000262189	NM_170606.2	3388	aAc/aGc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306741	41306741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	33	633	2	ENST00000373198.4:c.918G>T	p.Trp306Cys	p.W306C	ENST00000373198	NM_133170.3	306	tgG/tgT																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	56	705	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
ATR	0	MSKCC	GRCh37	3	142266714	142266714	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	48	687	0	ENST00000350721.4:c.3210A>T	p.Gln1070His	p.Q1070H	ENST00000350721	NM_001184.3	1070	caA/caT																																																																														
RASA1	0	MSKCC	GRCh37	5	86674306	86674306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	34	555	0	ENST00000274376.6:c.2438C>A	p.Ala813Asp	p.A813D	ENST00000274376	NM_002890.2	813	gCt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	292	783	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	113	326	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																																																														
SMAD2	0	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	173	785	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																																																														
INHBA	0	MSKCC	GRCh37	7	41739819	41739819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	127	719	0	ENST00000242208.4:c.154C>A	p.Pro52Thr	p.P52T	ENST00000242208	NM_002192.2	52	Cca/Aca																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252940	36252940	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	298	622	0	ENST00000300305.3:c.422C>A	p.Ser141Ter	p.S141*	ENST00000300305		141	tCg/tAg																																																																														
MDM4	0	MSKCC	GRCh37	1	204518442	204518442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	128	547	0	ENST00000367182.3:c.1105C>T	p.Pro369Ser	p.P369S	ENST00000367182	NM_001278516.1	369	Cct/Tct																																																																														
KDM5A	0	MSKCC	GRCh37	12	427372	427372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	183	769	0	ENST00000399788.2:c.2797G>A	p.Ala933Thr	p.A933T	ENST00000399788	NM_001042603.1	933	Gca/Aca																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713483	30713483	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	166	639	0	ENST00000359013.4:c.883C>T	p.Gln295Ter	p.Q295*	ENST00000359013	NM_001024847.2	295	Cag/Tag																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713811	30713811	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	144	822	0	ENST00000359013.4:c.1211A>G	p.Asp404Gly	p.D404G	ENST00000359013	NM_001024847.2	404	gAc/gGc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265619	41266368	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCAC	TTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCAC	-			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	208	484	0	ENST00000349496.5:c.13+49_242-75del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67591095	67591148	+	inframe_deletion	In_Frame_Del	DEL	TGAACAGCATTAAACCAGACCTTATCCAGCTGAGAAAGACGAGAGACCAATACT	TGAACAGCATTAAACCAGACCTTATCCAGCTGAGAAAGACGAGAGACCAATACT	-			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	51	447	0	ENST00000274335.5:c.1691_1744del	p.Asn564_Leu581del	p.N564_L581del	ENST00000274335		563	aTGAACAGCATTAAACCAGACCTTATCCAGCTGAGAAAGACGAGAGACCAATACTtg/atg																																																																														
APC	0	MSKCC	GRCh37	5	112179746	112179746	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	114	463	0	ENST00000257430.4:c.8455A>G	p.Lys2819Glu	p.K2819E	ENST00000257430	NM_000038.5	2819	Aaa/Gaa																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508589	106508589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	84	489	0	ENST00000359195.3:c.583C>A	p.Leu195Ile	p.L195I	ENST00000359195	NM_002649.2	195	Ctc/Atc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521466	8521466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	186	839	0	ENST00000356435.5:c.772G>A	p.Val258Met	p.V258M	ENST00000356435		258	Gtg/Atg																																																																														
BCOR	0	MSKCC	GRCh37	X	39911616	39911616	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	181	405	0	ENST00000378444.4:c.5014A>G	p.Lys1672Glu	p.K1672E	ENST00000378444	NM_001123385.1	1672	Aaa/Gaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1012	112	791	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	14	463	0	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt																																																																														
TEK	0	MSKCC	GRCh37	9	27192600	27192600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	45	685	3	ENST00000380036.4:c.1603C>T	p.Arg535Cys	p.R535C	ENST00000380036	NM_000459.3	535	Cgc/Tgc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120465283	120465283	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	47	522	0	ENST00000256646.2:c.4978T>A	p.Ser1660Thr	p.S1660T	ENST00000256646	NM_024408.3	1660	Tca/Aca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0023680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	351	714	1	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0023680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	120	593	2	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																																																														
ATM	0	MSKCC	GRCh37	11	108115747	108115747	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	64	295	0	ENST00000278616.4:c.895G>T	p.Glu299Ter	p.E299*	ENST00000278616	NM_000051.3	299	Gaa/Taa																																																																														
ARAF	0	MSKCC	GRCh37	X	47430353	47430353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	247	521	0	ENST00000377045.4:c.1628G>A	p.Arg543Gln	p.R543Q	ENST00000377045	NM_001654.4	543	cGg/cAg																																																																														
PGR	0	MSKCC	GRCh37	11	100998426	100998426	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	145	488	0	ENST00000325455.5:c.1376A>C	p.Glu459Ala	p.E459A	ENST00000325455	NM_001202474.3	459	gAg/gCg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604703	48604703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	135	584	0	ENST00000342988.3:c.1525T>C	p.Trp509Arg	p.W509R	ENST00000342988	NM_005359.5	509	Tgg/Cgg																																																																														
ERF	0	MSKCC	GRCh37	19	42754718	42754718	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0023680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	45	257	0	ENST00000222329.4:c.23-1G>C		p.X8_splice	ENST00000222329	NM_006494.2	8																																																																															
APC	0	MSKCC	GRCh37	5	112164552	112164552	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0023680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	44	326	1	ENST00000257430.4:c.1627-1G>T		p.X543_splice	ENST00000257430	NM_000038.5	543																																																																															
ROS1	0	MSKCC	GRCh37	6	117647465	117647465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	170	736	1	ENST00000368508.3:c.5479C>A	p.Gln1827Lys	p.Q1827K	ENST00000368508	NM_002944.2	1827	Cag/Aag																																																																														
BCOR	0	MSKCC	GRCh37	X	39911573	39911573	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	206	398	0	ENST00000378444.4:c.5057A>T	p.Asn1686Ile	p.N1686I	ENST00000378444	NM_001123385.1	1686	aAc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	507	883	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	587	917	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
KLF4	0	MSKCC	GRCh37	9	110249635	110249635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	732	1129	0	ENST00000374672.4:c.1040A>G	p.Asn347Ser	p.N347S	ENST00000374672	NM_004235.4	347	aAt/aGt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023151	27023179	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	-			P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	385	104	0	ENST00000324856.7:c.267_295del	p.Ser90ProfsTer11	p.S90Pfs*11	ENST00000324856	NM_006015.4	86	gGCGGAGCCGGCAGCGGCGGCGGGCCCGGC/g																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	375	274	0	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
RFWD2	0	MSKCC	GRCh37	1	175996744	175996769	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGAATTTAACACAGCACACATTA	GGCTGAATTTAACACAGCACACATTA	-			P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	338	622	2	ENST00000367669.3:c.1668_1693del	p.Asn557LeufsTer19	p.N557Lfs*19	ENST00000367669	NM_022457.5	556	gcTAATGTGTGCTGTGTTAAATTCAGCCcc/gccc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78831606	78831606	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	314	681	1	ENST00000306801.3:c.1415T>C	p.Ile472Thr	p.I472T	ENST00000306801	NM_020761.2	472	aTc/aCc																																																																														
TAP1	0	MSKCC	GRCh37	6	32815709	32815709	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	324	805	0	ENST00000354258.4:c.1907A>G	p.Tyr636Cys	p.Y636C	ENST00000354258	NM_000593.5	636	tAc/tGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	514	674	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0023700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	214	769	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0023700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	116	345	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0023700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	101	442	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																																																														
MPL	0	MSKCC	GRCh37	1	43812466	43812466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	56	448	0	ENST00000372470.3:c.1169G>A	p.Arg390His	p.R390H	ENST00000372470	NM_005373.2	390	cGc/cAc																																																																														
MSI1	0	MSKCC	GRCh37	12	120800928	120800928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	169	625	0	ENST00000257552.2:c.320G>A	p.Arg107Gln	p.R107Q	ENST00000257552	NM_002442.3	107	cGa/cAa																																																																														
EED	0	MSKCC	GRCh37	11	85979530	85979530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	163	558	0	ENST00000263360.6:c.893A>G	p.Asp298Gly	p.D298G	ENST00000263360	NM_003797.3	298	gAt/gGt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177576	56177576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	134	434	1	ENST00000399503.3:c.2549C>T	p.Thr850Ile	p.T850I	ENST00000399503	NM_005921.1	850	aCc/aTc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729443	41729443	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	197	686	0	ENST00000242208.4:c.1086del	p.Ser364ProfsTer33	p.S364Pfs*33	ENST00000242208	NM_002192.2	362	tcC/tc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860112	152860112	+	synonymous_variant	Silent	SNP	G	G	A			P-0023700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	223	355	1	ENST00000406277.2:c.316C>T	p.Leu106=	p.L106=	ENST00000406277	NM_152274.4	106	Ctg/Ttg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2207631	2207631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	116	734	0	ENST00000398665.3:c.915G>T	p.Trp305Cys	p.W305C	ENST00000398665	NM_032482.2	305	tgG/tgT																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	135	423	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	135	423	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	135	423	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	255	699	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat																																																																														
KDR	0	MSKCC	GRCh37	4	55972913	55972913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	141	770	0	ENST00000263923.4:c.1477G>T	p.Gly493Ter	p.G493*	ENST00000263923	NM_002253.2	493	Gga/Tga																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602328	10602328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	168	836	0	ENST00000171111.5:c.1250G>T	p.Gly417Val	p.G417V	ENST00000171111	NM_203500.1	417	gGg/gTg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134898765	134898765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	145	478	0	ENST00000398015.3:c.1823G>T	p.Arg608Leu	p.R608L	ENST00000398015	NM_004441.4	608	cGg/cTg																																																																														
IL10	0	MSKCC	GRCh37	1	206944290	206944290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	65	625	0	ENST00000423557.1:c.340G>A	p.Glu114Lys	p.E114K	ENST00000423557	NM_000572.2	114	Gag/Aag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485897	8485897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	107	515	0	ENST00000356435.5:c.2920C>A	p.Pro974Thr	p.P974T	ENST00000356435		974	Cca/Aca																																																																														
POLE	0	MSKCC	GRCh37	12	133237701	133237701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	73	665	0	ENST00000320574.5:c.2914G>A	p.Glu972Lys	p.E972K	ENST00000320574	NM_006231.2	972	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106795	27106795	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	145	641	0	ENST00000324856.7:c.6406C>G	p.Leu2136Val	p.L2136V	ENST00000324856	NM_006015.4	2136	Ctg/Gtg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107111	27107111	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	154	542	0	ENST00000324856.7:c.6722T>G	p.Leu2241Trp	p.L2241W	ENST00000324856	NM_006015.4	2241	tTg/tGg																																																																														
IL10	0	MSKCC	GRCh37	1	206943219	206943219	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	33	480	1	ENST00000423557.1:c.399A>T	p.Glu133Asp	p.E133D	ENST00000423557	NM_000572.2	133	gaA/gaT																																																																														
RET	0	MSKCC	GRCh37	10	43606876	43606876	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	164	936	0	ENST00000355710.3:c.1485G>T	p.Gln495His	p.Q495H	ENST00000355710	NM_020975.4	495	caG/caT																																																																														
TET1	0	MSKCC	GRCh37	10	70405407	70405407	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	119	823	0	ENST00000373644.4:c.2921C>G	p.Thr974Ser	p.T974S	ENST00000373644	NM_030625.2	974	aCt/aGt																																																																														
MYOD1	0	MSKCC	GRCh37	11	17742818	17742818	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	138	805	0	ENST00000250003.3:c.726G>C	p.Lys242Asn	p.K242N	ENST00000250003	NM_002478.4	242	aaG/aaC																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138797	64138797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	50	667	2	ENST00000334205.4:c.2164G>T	p.Val722Leu	p.V722L	ENST00000334205	NM_003942.2	722	Gtg/Ttg																																																																														
ARID2	0	MSKCC	GRCh37	12	46245732	46245732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	74	463	0	ENST00000334344.6:c.3826A>G	p.Thr1276Ala	p.T1276A	ENST00000334344	NM_152641.2	1276	Aca/Gca																																																																														
ARID2	0	MSKCC	GRCh37	12	46298726	46298726	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	122	456	0	ENST00000334344.6:c.5373G>T	p.Lys1791Asn	p.K1791N	ENST00000334344	NM_152641.2	1791	aaG/aaT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49448479	49448479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	120	651	0	ENST00000301067.7:c.232G>T	p.Gly78Trp	p.G78W	ENST00000301067	NM_003482.3	78	Ggg/Tgg																																																																														
GLI1	0	MSKCC	GRCh37	12	57858585	57858585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	104	809	0	ENST00000228682.2:c.323C>A	p.Ala108Asp	p.A108D	ENST00000228682	NM_005269.2	108	gCt/gAt																																																																														
FLT1	0	MSKCC	GRCh37	13	28880860	28880860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	118	654	0	ENST00000282397.4:c.3770G>T	p.Arg1257Leu	p.R1257L	ENST00000282397	NM_002019.4	1257	cGc/cTc																																																																														
FLT1	0	MSKCC	GRCh37	13	28893605	28893605	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	221	525	0	ENST00000282397.4:c.3241G>C	p.Asp1081His	p.D1081H	ENST00000282397	NM_002019.4	1081	Gac/Cac																																																																														
BRCA2	0	MSKCC	GRCh37	13	32914173	32914173	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	219	619	0	ENST00000380152.3:c.5681A>T	p.Tyr1894Phe	p.Y1894F	ENST00000380152		1894	tAc/tTc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473727	67473727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	137	688	0	ENST00000327367.4:c.807C>A	p.Phe269Leu	p.F269L	ENST00000327367	NM_005902.3	269	ttC/ttA																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576184	88576184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	114	616	0	ENST00000360948.2:c.1489G>C	p.Gly497Arg	p.G497R	ENST00000360948	NM_001012338.2	497	Ggg/Cgg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3824629	3824629	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	123	568	1	ENST00000262367.5:c.2224C>A	p.Arg742Ser	p.R742S	ENST00000262367	NM_004380.2	742	Cgt/Agt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858304	9858304	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	50	495	1	ENST00000330684.3:c.3097C>T	p.Gln1033Ter	p.Q1033*	ENST00000330684	NM_001134407.1	1033	Cag/Tag																																																																														
FANCA	0	MSKCC	GRCh37	16	89858950	89858950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	102	527	0	ENST00000389301.3:c.1012G>T	p.Asp338Tyr	p.D338Y	ENST00000389301	NM_000135.2	338	Gat/Tat																																																																														
NF1	0	MSKCC	GRCh37	17	29552222	29552222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	81	624	1	ENST00000358273.4:c.1955G>C	p.Arg652Pro	p.R652P	ENST00000358273	NM_001042492.2	652	cGt/cCt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11097194	11097194	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	110	809	0	ENST00000344626.4:c.685G>T	p.Gly229Ter	p.G229*	ENST00000344626	NM_003072.3	229	Gga/Tga																																																																														
JAK3	0	MSKCC	GRCh37	19	17937660	17937660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	136	661	0	ENST00000458235.1:c.3267C>G	p.Ser1089Arg	p.S1089R	ENST00000458235	NM_000215.3	1089	agC/agG																																																																														
JAK3	0	MSKCC	GRCh37	19	17955161	17955161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	168	812	0	ENST00000458235.1:c.66G>T	p.Glu22Asp	p.E22D	ENST00000458235	NM_000215.3	22	gaG/gaT																																																																														
CIC	0	MSKCC	GRCh37	19	42794640	42794640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	215	731	1	ENST00000575354.2:c.1720C>T	p.Pro574Ser	p.P574S	ENST00000575354	NM_015125.3	574	Cca/Tca																																																																														
EPAS1	0	MSKCC	GRCh37	2	46603793	46603793	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	105	771	0	ENST00000263734.3:c.1150G>C	p.Glu384Gln	p.E384Q	ENST00000263734	NM_001430.4	384	Gag/Cag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212483901	212483901	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	101	604	0	ENST00000342788.4:c.2301+1G>C		p.X767_splice	ENST00000342788	NM_005235.2	767																																																																															
PAK7	0	MSKCC	GRCh37	20	9525035	9525035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	100	493	0	ENST00000353224.5:c.1850G>T	p.Arg617Met	p.R617M	ENST00000353224	NM_177990.2	617	aGg/aTg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024521	31024521	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	49	656	1	ENST00000375687.4:c.4008del	p.Lys1337SerfsTer113	p.K1337Sfs*113	ENST00000375687	NM_015338.5	1336	Ggg/gg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306620	41306620	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	135	727	1	ENST00000373198.4:c.1039C>A	p.Leu347Met	p.L347M	ENST00000373198	NM_133170.3	347	Ctg/Atg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419852	41419852	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	57	530	0	ENST00000373198.4:c.469T>C	p.Trp157Arg	p.W157R	ENST00000373198	NM_133170.3	157	Tgg/Cgg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46251025	46251025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	182	591	0	ENST00000371998.3:c.34G>T	p.Ala12Ser	p.A12S	ENST00000371998		12	Gcc/Tcc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713433	30713433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	86	602	0	ENST00000359013.4:c.833G>T	p.Gly278Val	p.G278V	ENST00000359013	NM_001024847.2	278	gGt/gTt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259060	89259060	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	43	322	0	ENST00000336596.2:c.204C>A	p.Tyr68Ter	p.Y68*	ENST00000336596	NM_005233.5	68	taC/taA																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390219	89390219	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	53	359	0	ENST00000336596.2:c.970del	p.Arg324AspfsTer13	p.R324Dfs*13	ENST00000336596	NM_005233.5	323	aCc/ac																																																																														
FOXL2	0	MSKCC	GRCh37	3	138664859	138665217	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCGCGGCTGCAGCCGCAGCTGCTGCAGCCGCTGCGGCTGCCGCCATCTGGCAGGAGGCATAGGGCATGGGTGAGGGAGGCTGCGGTAGCGGCCACGAGTTGTTGAGGAAGCCAGACTGCAGGTACTTGGGGGGCGCCAGGTAGCCGTAGCCGTCGGCCCCGGCGCCCGCCACGCCGCACCCGCCTGCGGCGCCTCCGGCCCCGAAGAGCCCCTTGCCGGGCTGGAAGTGCGCGGGCGGCGGCCGGAAGGGCCTCTTCATGCGGCGGCGGCGCCGGTAGTTGCCCTTCTCGAACATGTCTTCGCAGGCCGGGTCCAGCGTCCAGTAGTTGCCCTTGCGCTCGCCGCCGCCCTCGCGC	GGCCCGCGGCTGCAGCCGCAGCTGCTGCAGCCGCTGCGGCTGCCGCCATCTGGCAGGAGGCATAGGGCATGGGTGAGGGAGGCTGCGGTAGCGGCCACGAGTTGTTGAGGAAGCCAGACTGCAGGTACTTGGGGGGCGCCAGGTAGCCGTAGCCGTCGGCCCCGGCGCCCGCCACGCCGCACCCGCCTGCGGCGCCTCCGGCCCCGAAGAGCCCCTTGCCGGGCTGGAAGTGCGCGGGCGGCGGCCGGAAGGGCCTCTTCATGCGGCGGCGGCGCCGGTAGTTGCCCTTCTCGAACATGTCTTCGCAGGCCGGGTCCAGCGTCCAGTAGTTGCCCTTGCGCTCGCCGCCGCCCTCGCGC	-			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	54	124	0	ENST00000330315.3:c.348_706del	p.Glu118Ter	p.E118*	ENST00000330315	NM_023067.3	116	ccGCGCGAGGGCGGCGGCGAGCGCAAGGGCAACTACTGGACGCTGGACCCGGCCTGCGAAGACATGTTCGAGAAGGGCAACTACCGGCGCCGCCGCCGCATGAAGAGGCCCTTCCGGCCGCCGCCCGCGCACTTCCAGCCCGGCAAGGGGCTCTTCGGGGCCGGAGGCGCCGCAGGCGGGTGCGGCGTGGCGGGCGCCGGGGCCGACGGCTACGGCTACCTGGCGCCCCCCAAGTACCTGCAGTCTGGCTTCCTCAACAACTCGTGGCCGCTACCGCAGCCTCCCTCACCCATGCCCTATGCCTCCTGCCAGATGGCGGCAGCCGCAGCGGCTGCAGCAGCTGCGGCTGCAGCCGCGGGCCcc/cccc																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665419	138665419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	151	714	0	ENST00000330315.3:c.146C>A	p.Pro49Gln	p.P49Q	ENST00000330315	NM_023067.3	49	cCg/cAg																																																																														
ATR	0	MSKCC	GRCh37	3	142286956	142286956	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	110	709	0	ENST00000350721.4:c.100A>T	p.Arg34Ter	p.R34*	ENST00000350721	NM_001184.3	34	Aga/Tga																																																																														
TP63	0	MSKCC	GRCh37	3	189612248	189612248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	46	494	0	ENST00000264731.3:c.2000C>T	p.Ala667Val	p.A667V	ENST00000264731	NM_003722.4	667	gCt/gTt																																																																														
TET2	0	MSKCC	GRCh37	4	106157191	106157191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	99	524	0	ENST00000380013.4:c.2092G>T	p.Val698Leu	p.V698L	ENST00000380013	NM_001127208.2	698	Gtg/Ttg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143114307	143114307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	79	501	0	ENST00000262992.4:c.1114C>A	p.His372Asn	p.H372N	ENST00000262992	NM_001101669.1	372	Cat/Aat																																																																														
MSH3	0	MSKCC	GRCh37	5	80040323	80040323	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	80	463	0	ENST00000265081.6:c.1654-2A>T		p.X552_splice	ENST00000265081	NM_002439.4	552																																																																															
RASA1	0	MSKCC	GRCh37	5	86668002	86668002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	80	370	0	ENST00000274376.6:c.1766G>T	p.Arg589Leu	p.R589L	ENST00000274376	NM_002890.2	589	cGc/cTc																																																																														
APC	0	MSKCC	GRCh37	5	112178282	112178282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	76	486	1	ENST00000257430.4:c.6991C>T	p.Pro2331Ser	p.P2331S	ENST00000257430	NM_000038.5	2331	Cct/Tct																																																																														
NSD1	0	MSKCC	GRCh37	5	176696690	176696691	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	59	432	0	ENST00000439151.2:c.5397dup	p.Gly1800TrpfsTer3	p.G1800Wfs*3	ENST00000439151	NM_022455.4	1797	-/T																																																																														
FLT4	0	MSKCC	GRCh37	5	180057649	180057649	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	73	883	0	ENST00000261937.6:c.306T>A	p.His102Gln	p.H102Q	ENST00000261937	NM_182925.4	102	caT/caA																																																																														
SESN1	0	MSKCC	GRCh37	6	109415059	109415059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	118	870	0	ENST00000436639.2:c.218C>G	p.Ser73Cys	p.S73C	ENST00000436639	NM_014454.2	73	tCt/tGt																																																																														
LATS1	0	MSKCC	GRCh37	6	150001594	150001594	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	78	434	0	ENST00000253339.5:c.2011-1G>T		p.X671_splice	ENST00000253339		671																																																																															
ESR1	0	MSKCC	GRCh37	6	152382204	152382204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	75	625	0	ENST00000206249.3:c.1314G>A	p.Met438Ile	p.M438I	ENST00000206249	NM_000125.3	438	atG/atA																																																																														
HGF	0	MSKCC	GRCh37	7	81350112	81350112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	70	565	0	ENST00000222390.5:c.1220G>T	p.Arg407Ile	p.R407I	ENST00000222390	NM_000601.4	407	aGa/aTa																																																																														
HGF	0	MSKCC	GRCh37	7	81350126	81350129	+	frameshift_variant	Frame_Shift_Del	DEL	GTTG	GTTG	TTT			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	141	556	2	ENST00000222390.5:c.1203_1206delinsAAA	p.Leu403TyrfsTer8	p.L403Yfs*8	ENST00000222390	NM_000601.4	401	ggCAAC/ggAAA																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146180	38146180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	87	784	0	ENST00000317025.8:c.3326G>T	p.Gly1109Val	p.G1109V	ENST00000317025	NM_023034.1	1109	gGc/gTc																																																																														
PREX2	0	MSKCC	GRCh37	8	69028037	69028037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	89	704	1	ENST00000288368.4:c.3196G>A	p.Glu1066Lys	p.E1066K	ENST00000288368	NM_024870.2	1066	Gag/Aag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44928823	44928823	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	33	346	0	ENST00000377967.4:c.1924-1G>A		p.X642_splice	ENST00000377967	NM_021140.2	642																																																																															
ARAF	0	MSKCC	GRCh37	X	47422725	47422725	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	40	555	0	ENST00000377045.4:c.197A>T	p.Lys66Met	p.K66M	ENST00000377045	NM_001654.4	66	aAg/aTg																																																																														
SOX17	0	MSKCC	GRCh37	8	55371735	55371735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	51	637	0	ENST00000297316.4:c.425G>A	p.Arg142His	p.R142H	ENST00000297316	NM_022454.3	142	cGc/cAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0023704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	203	683	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	127	449	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971192	21971192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	25	518	0	ENST00000304494.5:c.166A>G	p.Ser56Gly	p.S56G	ENST00000304494	NM_000077.4	56	Agc/Ggc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971192	21971192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	25	518	0	ENST00000304494.5:c.166A>G	p.Ser56Gly	p.S56G	ENST00000304494	NM_000077.4	56	Agc/Ggc																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971192	21971192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	25	518	0	ENST00000304494.5:c.166A>G	p.Ser56Gly	p.S56G	ENST00000304494	NM_000077.4	56	Agc/Ggc																																																																														
CYLD	0	MSKCC	GRCh37	16	50816263	50816263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023709-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	85	375	0	ENST00000398568.2:c.1703T>C	p.Val568Ala	p.V568A	ENST00000398568	NM_001042412.1	568	gTa/gCa																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	149	762	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
RHOA	0	MSKCC	GRCh37	3	49397800	49397800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	94	838	0	ENST00000418115.1:c.424G>A	p.Glu142Lys	p.E142K	ENST00000418115	NM_001664.2	142	Gaa/Aaa																																																																														
CDH1	0	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	167	755	0	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga																																																																														
TBX3	0	MSKCC	GRCh37	12	115112312	115112313	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0023711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	41	220	0	ENST00000257566.3:c.1426_1427dup	p.Glu477ArgfsTer156	p.E477Rfs*156	ENST00000257566	NM_016569.3	476	aag/aaAAg																																																																														
KDR	3791	MSKCC	GRCh37	4	55953837	55953837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			323	39	713	0	ENST00000263923.4:c.3599C>T	p.Ser1200Phe	p.S1200F	ENST00000263923	NM_002253.2	1200	tCc/tTc																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944914	31944914	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			228	43	346	0	ENST00000340398.3:c.187C>G	p.Arg63Gly	p.R63G	ENST00000340398	NM_001013699.2	63	Cgg/Ggg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			321	89	673	1	ENST00000344626.4:c.3484G>T	p.Gly1162Cys	p.G1162C	ENST00000344626	NM_003072.3	1162	Ggc/Tgc																																																																														
GSK3B	0	MSKCC	GRCh37	3	119624685	119624685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			282	36	614	0	ENST00000316626.5:c.730G>T	p.Gly244Cys	p.G244C	ENST00000316626		244	Ggc/Tgc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851274	156851274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			453	55	694	0	ENST00000524377.1:c.2231G>C	p.Arg744Pro	p.R744P	ENST00000524377	NM_002529.3	744	cGt/cCt																																																																														
TET1	0	MSKCC	GRCh37	10	70451477	70451477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			410	61	759	0	ENST00000373644.4:c.6317C>G	p.Ser2106Cys	p.S2106C	ENST00000373644	NM_030625.2	2106	tCt/tGt																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137198	64137198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			530	44	830	0	ENST00000334205.4:c.1630G>T	p.Gly544Trp	p.G544W	ENST00000334205	NM_003942.2	544	Ggg/Tgg																																																																														
CHEK1	0	MSKCC	GRCh37	11	125496701	125496701	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			332	72	499	0	ENST00000428830.2:c.38A>T	p.Gln13Leu	p.Q13L	ENST00000428830	NM_001114121.2	13	cAa/cTa																																																																														
ETV6	0	MSKCC	GRCh37	12	12022766	12022766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			412	56	572	1	ENST00000396373.4:c.872G>T	p.Arg291Met	p.R291M	ENST00000396373	NM_001987.4	291	aGg/aTg																																																																														
GLI1	0	MSKCC	GRCh37	12	57861995	57861996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			288	45	446	0	ENST00000228682.2:c.1297dup	p.Glu433GlyfsTer19	p.E433Gfs*19	ENST00000228682	NM_005269.2	432	-/G																																																																														
TBX3	0	MSKCC	GRCh37	12	115109795	115109795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			426	75	835	2	ENST00000257566.3:c.2083C>A	p.Arg695Ser	p.R695S	ENST00000257566	NM_016569.3	695	Cgc/Agc																																																																														
FLT1	0	MSKCC	GRCh37	13	28895693	28895693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			401	54	767	0	ENST00000282397.4:c.3081C>A	p.Asn1027Lys	p.N1027K	ENST00000282397	NM_002019.4	1027	aaC/aaA																																																																														
DICER1	0	MSKCC	GRCh37	14	95574405	95574405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			168	31	297	0	ENST00000343455.3:c.2462G>T	p.Arg821Leu	p.R821L	ENST00000343455	NM_177438.2	821	cGc/cTc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88420272	88420272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			408	64	628	0	ENST00000360948.2:c.2414G>T	p.Gly805Val	p.G805V	ENST00000360948	NM_001012338.2	805	gGg/gTg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88483911	88483911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			543	65	845	0	ENST00000360948.2:c.1659C>A	p.Phe553Leu	p.F553L	ENST00000360948	NM_001012338.2	553	ttC/ttA																																																																														
AXIN1	0	MSKCC	GRCh37	16	348175	348175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			446	124	763	0	ENST00000262320.3:c.1331G>T	p.Trp444Leu	p.W444L	ENST00000262320	NM_003502.3	444	tGg/tTg																																																																														
TRAF7	0	MSKCC	GRCh37	16	2213931	2213931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			405	109	731	1	ENST00000326181.6:c.10G>T	p.Gly4Cys	p.G4C	ENST00000326181	NM_032271.2	4	Ggc/Tgc																																																																														
TRAF7	0	MSKCC	GRCh37	16	2221355	2221355	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			338	114	646	0	ENST00000326181.6:c.439G>T	p.Gly147Trp	p.G147W	ENST00000326181	NM_032271.2	147	Ggg/Tgg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779157	3779157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			326	84	594	1	ENST00000262367.5:c.5891G>T	p.Arg1964Leu	p.R1964L	ENST00000262367	NM_004380.2	1964	cGt/cTt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991499	72991499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			498	154	916	0	ENST00000268489.5:c.2546G>T	p.Gly849Val	p.G849V	ENST00000268489	NM_006885.3	849	gGc/gTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578539	7578539	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			486	251	965	0	ENST00000269305.4:c.391A>T	p.Asn131Tyr	p.N131Y	ENST00000269305	NM_001126112.2	131	Aac/Tac																																																																														
NCOR1	0	MSKCC	GRCh37	17	15973761	15973761	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			340	104	572	1	ENST00000268712.3:c.4231A>T	p.Ser1411Cys	p.S1411C	ENST00000268712	NM_006311.3	1411	Agc/Tgc																																																																														
NF1	0	MSKCC	GRCh37	17	29552227	29552227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			350	37	600	0	ENST00000358273.4:c.1960C>A	p.Pro654Thr	p.P654T	ENST00000358273	NM_001042492.2	654	Cct/Act																																																																														
RNF43	0	MSKCC	GRCh37	17	56435485	56435485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			451	142	715	0	ENST00000407977.2:c.1652A>C	p.His551Pro	p.H551P	ENST00000407977		551	cAc/cCc																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39573238	39573238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			258	509	37	0	ENST00000262039.4:c.719G>T	p.Gly240Val	p.G240V	ENST00000262039	NM_002647.2	240	gGt/gTt																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39573240	39573240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			270	36	520	0	ENST00000262039.4:c.721G>T	p.Asp241Tyr	p.D241Y	ENST00000262039	NM_002647.2	241	Gat/Tat																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39576688	39576688	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			259	60	466	0	ENST00000262039.4:c.978A>T	p.Gln326His	p.Q326H	ENST00000262039	NM_002647.2	326	caA/caT																																																																														
MSH2	0	MSKCC	GRCh37	2	47641522	47641522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			316	24	510	0	ENST00000233146.2:c.907G>T	p.Asp303Tyr	p.D303Y	ENST00000233146	NM_000251.2	303	Gat/Tat																																																																														
SF3B1	0	MSKCC	GRCh37	2	198257747	198257747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			329	49	546	1	ENST00000335508.6:c.3705G>T	p.Glu1235Asp	p.E1235D	ENST00000335508	NM_012433.2	1235	gaG/gaT																																																																														
SF3B1	0	MSKCC	GRCh37	2	198257748	198257748	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			361	21	543	0	ENST00000335508.6:c.3704A>T	p.Glu1235Val	p.E1235V	ENST00000335508	NM_012433.2	1235	gAg/gTg																																																																														
ERBB4	0	MSKCC	GRCh37	2	213403190	213403190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			315	47	502	0	ENST00000342788.4:c.65C>T	p.Pro22Leu	p.P22L	ENST00000342788	NM_005235.2	22	cCc/cTc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793436	242793436	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			414	41	711	0	ENST00000334409.5:c.641C>A	p.Ser214Ter	p.S214*	ENST00000334409	NM_005018.2	214	tCa/tAa																																																																														
PAK7	0	MSKCC	GRCh37	20	9546651	9546651	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			330	154	565	0	ENST00000353224.5:c.1371A>T	p.Glu457Asp	p.E457D	ENST00000353224	NM_177990.2	457	gaA/gaT																																																																														
ASXL1	0	MSKCC	GRCh37	20	31017234	31017234	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			275	20	331	0	ENST00000375687.4:c.565G>C	p.Gly189Arg	p.G189R	ENST00000375687	NM_015338.5	189	Ggg/Cgg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31019162	31019162	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			480	45	733	3	ENST00000375687.4:c.757G>T	p.Glu253Ter	p.E253*	ENST00000375687	NM_015338.5	253	Gag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40770556	40770556	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			375	34	630	2	ENST00000373198.4:c.2826del	p.Tyr943ThrfsTer6	p.Y943Tfs*6	ENST00000373198	NM_133170.3	942	tcC/tc																																																																														
PPARG	0	MSKCC	GRCh37	3	12458454	12458454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			528	52	766	0	ENST00000287820.6:c.1071G>T	p.Met357Ile	p.M357I	ENST00000287820	NM_015869.4	357	atG/atT																																																																														
SHQ1	0	MSKCC	GRCh37	3	72842131	72842131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			338	24	525	0	ENST00000325599.8:c.1117G>T	p.Asp373Tyr	p.D373Y	ENST00000325599	NM_018130.2	373	Gac/Tac																																																																														
BCL6	0	MSKCC	GRCh37	3	187447681	187447681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			345	35	653	0	ENST00000232014.4:c.512G>T	p.Ser171Ile	p.S171I	ENST00000232014	NM_001130845.1	171	aGc/aTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187627954	187627954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			360	51	728	0	ENST00000441802.2:c.3028G>T	p.Val1010Phe	p.V1010F	ENST00000441802	NM_005245.3	1010	Gtt/Ttt																																																																														
MDC1	0	MSKCC	GRCh37	6	30679993	30679993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			355	93	544	1	ENST00000376406.3:c.1726G>T	p.Asp576Tyr	p.D576Y	ENST00000376406	NM_014641.2	576	Gac/Tac																																																																														
ROS1	0	MSKCC	GRCh37	6	117645554	117645554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			248	46	600	0	ENST00000368508.3:c.5582G>T	p.Ser1861Ile	p.S1861I	ENST00000368508	NM_002944.2	1861	aGt/aTt																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200218	138200218	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			352	82	549	0	ENST00000237289.4:c.1636G>T	p.Glu546Ter	p.E546*	ENST00000237289	NM_001270507.1	546	Gag/Tag																																																																														
CARD11	0	MSKCC	GRCh37	7	2962930	2962930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			449	231	919	0	ENST00000396946.4:c.1978C>G	p.Arg660Gly	p.R660G	ENST00000396946	NM_032415.4	660	Cgg/Ggg																																																																														
HGF	0	MSKCC	GRCh37	7	81355212	81355213	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AT			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			172	25	357	1	ENST00000222390.5:c.1161_1162delinsAT	p.His387_Gly388delinsGlnTer	p.H387_G388delinsQ*	ENST00000222390	NM_000601.4	387	caTGga/caATga																																																																														
HGF	0	MSKCC	GRCh37	7	81358944	81358944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			389	31	583	0	ENST00000222390.5:c.1017G>T	p.Met339Ile	p.M339I	ENST00000222390	NM_000601.4	339	atG/atT																																																																														
HGF	0	MSKCC	GRCh37	7	81381579	81381579	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			232	13	232	0	ENST00000222390.5:c.483-1G>T		p.X161_splice	ENST00000222390	NM_000601.4	161																																																																															
HGF	0	MSKCC	GRCh37	7	81388037	81388037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			297	37	719	2	ENST00000222390.5:c.338G>T	p.Gly113Val	p.G113V	ENST00000222390	NM_000601.4	113	gGc/gTc																																																																														
XRCC2	0	MSKCC	GRCh37	7	152345971	152345971	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			372	119	641	0	ENST00000359321.1:c.599A>G	p.Gln200Arg	p.Q200R	ENST00000359321	NM_005431.1	200	cAg/cGg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38162829	38162829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			414	30	706	0	ENST00000317025.8:c.2377C>T	p.Arg793Cys	p.R793C	ENST00000317025	NM_023034.1	793	Cgc/Tgc																																																																														
PREX2	0	MSKCC	GRCh37	8	69021727	69021727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			385	62	620	0	ENST00000288368.4:c.3015G>T	p.Gln1005His	p.Q1005H	ENST00000288368	NM_024870.2	1005	caG/caT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8376038	8376038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			226	35	469	0	ENST00000356435.5:c.4559C>A	p.Pro1520His	p.P1520H	ENST00000356435		1520	cCt/cAt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499645	8499645	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			234	58	443	0	ENST00000356435.5:c.2322+2T>A		p.X774_splice	ENST00000356435		774																																																																															
PTPRD	0	MSKCC	GRCh37	9	8500843	8500843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			284	49	600	0	ENST00000356435.5:c.2039G>T	p.Trp680Leu	p.W680L	ENST00000356435		680	tGg/tTg																																																																														
SYK	0	MSKCC	GRCh37	9	93650170	93650170	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			288	33	577	0	ENST00000375746.1:c.1721G>T	p.Arg574Leu	p.R574L	ENST00000375746	NM_001174167.1	574	cGa/cTa																																																																														
BCOR	0	MSKCC	GRCh37	X	39921559	39921559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			454	87	739	1	ENST00000378444.4:c.4261C>A	p.Arg1421Ser	p.R1421S	ENST00000378444	NM_001123385.1	1421	Cgc/Agc																																																																														
BCOR	0	MSKCC	GRCh37	X	39933531	39933531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			552	43	786	1	ENST00000378444.4:c.1068G>T	p.Glu356Asp	p.E356D	ENST00000378444	NM_001123385.1	356	gaG/gaT																																																																														
RBM10	0	MSKCC	GRCh37	X	47038745	47038745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			463	59	795	0	ENST00000329236.7:c.521C>A	p.Thr174Lys	p.T174K	ENST00000329236	NM_001204466.1	174	aCg/aAg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53245149	53245149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			414	31	683	0	ENST00000375401.3:c.791G>T	p.Gly264Val	p.G264V	ENST00000375401	NM_004187.3	264	gGg/gTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63409862	63409862	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			374	42	479	1	ENST00000330258.3:c.3305A>T	p.Tyr1102Phe	p.Y1102F	ENST00000330258	NM_152424.3	1102	tAt/tTt																																																																														
AMER1	0	MSKCC	GRCh37	X	63410239	63410239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			477	34	719	0	ENST00000330258.3:c.2928C>A	p.Ser976Arg	p.S976R	ENST00000330258	NM_152424.3	976	agC/agA																																																																														
AMER1	0	MSKCC	GRCh37	X	63411463	63411463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			553	70	953	0	ENST00000330258.3:c.1704G>T	p.Leu568Phe	p.L568F	ENST00000330258	NM_152424.3	568	ttG/ttT																																																																														
AMER1	0	MSKCC	GRCh37	X	63412468	63412468	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			506	68	963	0	ENST00000330258.3:c.699T>A	p.Asp233Glu	p.D233E	ENST00000330258	NM_152424.3	233	gaT/gaA																																																																														
AMER1	0	MSKCC	GRCh37	X	63412988	63412988	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			593	82	986	0	ENST00000330258.3:c.179T>A	p.Phe60Tyr	p.F60Y	ENST00000330258	NM_152424.3	60	tTt/tAt																																																																														
MED12	0	MSKCC	GRCh37	X	70344161	70344161	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			400	30	580	0	ENST00000374080.3:c.1897C>G	p.Pro633Ala	p.P633A	ENST00000374080		633	Cct/Gct																																																																														
MED12	0	MSKCC	GRCh37	X	70360708	70360708	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			167	14	156	0	ENST00000374080.3:c.6267+1G>T		p.X2089_splice	ENST00000374080		2089																																																																															
ATRX	0	MSKCC	GRCh37	X	76777865	76777865	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			272	28	590	1	ENST00000373344.5:c.6851G>T	p.Gly2284Val	p.G2284V	ENST00000373344	NM_000489.3	2284	gGa/gTa																																																																														
ATRX	0	MSKCC	GRCh37	X	76891418	76891418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			391	21	565	2	ENST00000373344.5:c.4687C>A	p.His1563Asn	p.H1563N	ENST00000373344	NM_000489.3	1563	Cat/Aat																																																																														
XIAP	0	MSKCC	GRCh37	X	123019590	123019590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			442	29	650	0	ENST00000355640.3:c.78G>T	p.Glu26Asp	p.E26D	ENST00000355640		26	gaG/gaT																																																																														
CDK12	0	MSKCC	GRCh37	17	37627698	37627698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			708	1002	43	0	ENST00000447079.4:c.1613C>T	p.Pro538Leu	p.P538L	ENST00000447079	NM_015083.1	538	cCt/cTt																																																																														
CDK12	0	MSKCC	GRCh37	17	37627694	37627694	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			676	44	950	0	ENST00000447079.4:c.1613del	p.Pro538LeufsTer72	p.P538Lfs*72	ENST00000447079	NM_015083.1	537	Ccc/cc																																																																														
SUFU	0	MSKCC	GRCh37	10	104377133	104377133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			433	850	36	0	ENST00000369902.3:c.1244G>A	p.Gly415Asp	p.G415D	ENST00000369902	NM_016169.3	415	gGc/gAc																																																																														
SHOC2	0	MSKCC	GRCh37	10	112769491	112769491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			287	25	640	0	ENST00000369452.4:c.1443C>A	p.Asn481Lys	p.N481K	ENST00000369452	NM_007373.3	481	aaC/aaA																																																																														
CDK8	0	MSKCC	GRCh37	13	26828824	26828824	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			263	454	31	0	ENST00000381527.3:c.46G>T	p.Val16Phe	p.V16F	ENST00000381527	NM_001260.1	16	Gtc/Ttc																																																																														
CXCR4	0	MSKCC	GRCh37	2	136872619	136872619	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			305	32	565	0	ENST00000241393.3:c.879C>G	p.Phe293Leu	p.F293L	ENST00000241393	NM_003467.2	293	ttC/ttG																																																																														
ATR	0	MSKCC	GRCh37	3	142224035	142224035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			454	747	27	0	ENST00000350721.4:c.5142G>T	p.Leu1714Phe	p.L1714F	ENST00000350721	NM_001184.3	1714	ttG/ttT																																																																														
EPHA5	0	MSKCC	GRCh37	4	66509127	66509127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			214	480	15	0	ENST00000273854.3:c.200G>C	p.Arg67Pro	p.R67P	ENST00000273854	NM_004439.5	67	cGc/cCc																																																																														
NBN	0	MSKCC	GRCh37	8	90976731	90976731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021419-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			296	17	536	0	ENST00000265433.3:c.901G>T	p.Gly301Cys	p.G301C	ENST00000265433	NM_002485.4	301	Ggt/Tgt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	121	599	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	246	855	0	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952100	178952100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	61	468	0	ENST00000263967.3:c.3155C>A	p.Thr1052Lys	p.T1052K	ENST00000263967	NM_006218.2	1052	aCa/aAa																																																																														
TP53	0	MSKCC	GRCh37	17	7579864	7579864	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	222	725	1	ENST00000269305.4:c.49G>T	p.Glu17Ter	p.E17*	ENST00000269305	NM_001126112.2	17	Gaa/Taa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48603090	48603090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	100	571	0	ENST00000342988.3:c.1391C>G	p.Ala464Gly	p.A464G	ENST00000342988	NM_005359.5	464	gCc/gGc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022242	31022242	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	63	344	0	ENST00000375687.4:c.1729del	p.Ser577HisfsTer126	p.S577Hfs*126	ENST00000375687	NM_015338.5	576	cTt/ct																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713707	30713707	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	71	418	0	ENST00000359013.4:c.1107G>A	p.Trp369Ter	p.W369*	ENST00000359013	NM_001024847.2	369	tgG/tgA																																																																														
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	16	486	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7579541	7579541	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	114	910	3	ENST00000269305.4:c.146A>T	p.Asp49Val	p.D49V	ENST00000269305	NM_001126112.2	49	gAt/gTt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347142	89347142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	29	613	4	ENST00000301030.4:c.5808G>T	p.Glu1936Asp	p.E1936D	ENST00000301030	NM_001256183.1	1936	gaG/gaT																																																																														
TP53	0	MSKCC	GRCh37	17	7579542	7579543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	110	898	0	ENST00000269305.4:c.144dup	p.Asp49ArgfsTer3	p.D49Rfs*3	ENST00000269305	NM_001126112.2	48	-/C																																																																														
CDK12	0	MSKCC	GRCh37	17	37618392	37618392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	23	454	0	ENST00000447079.4:c.68C>A	p.Pro23Gln	p.P23Q	ENST00000447079	NM_015083.1	23	cCg/cAg																																																																														
FAT1	0	MSKCC	GRCh37	4	187630524	187630524	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	44	933	0	ENST00000441802.2:c.458C>G	p.Ser153Ter	p.S153*	ENST00000441802	NM_005245.3	153	tCa/tGa																																																																														
RASA1	0	MSKCC	GRCh37	5	86628396	86628396	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	54	473	0	ENST00000274376.6:c.766del	p.Tyr256ThrfsTer23	p.Y256Tfs*23	ENST00000274376	NM_002890.2	255	taT/ta																																																																														
ATRX	0	MSKCC	GRCh37	X	76888847	76888847	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	76	376	0	ENST00000373344.5:c.4982G>T	p.Arg1661Leu	p.R1661L	ENST00000373344	NM_000489.3	1661	cGt/cTt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	208	575	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	158	525	1				ENST00000310581	NM_198253.2																																																																																
MED12	0	MSKCC	GRCh37	X	70361809	70361809	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	235	642	0	ENST00000374080.3:c.6485T>C	p.Leu2162Pro	p.L2162P	ENST00000374080		2162	cTc/cCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	82	740	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
RECQL4	0	MSKCC	GRCh37	8	145742144	145742144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	80	605	0	ENST00000428558.2:c.359G>A	p.Gly120Glu	p.G120E	ENST00000428558	NM_004260.3	120	gGa/gAa																																																																														
AKT3	0	MSKCC	GRCh37	1	243828133	243828134	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0023633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	52	689	1	ENST00000263826.5:c.224_225delinsTT	p.Arg75Ile	p.R75I	ENST00000263826	NM_005465.4	75	aGA/aTT																																																																														
POLE	0	MSKCC	GRCh37	12	133226276	133226276	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	162	752	0	ENST00000320574.5:c.3782T>G	p.Leu1261Arg	p.L1261R	ENST00000320574	NM_006231.2	1261	cTg/cGg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41226387	41226387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	90	758	2	ENST00000357654.3:c.4636G>A	p.Asp1546Asn	p.D1546N	ENST00000357654	NM_007294.3	1546	Gat/Aat																																																																														
BAP1	0	MSKCC	GRCh37	3	52441991	52442005	+	inframe_deletion	In_Frame_Del	DEL	TGGTGAAGTCCTTCA	TGGTGAAGTCCTTCA	-			P-0023633-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	110	566	0	ENST00000460680.1:c.344_358del	p.Met115_Thr119del	p.M115_T119del	ENST00000460680	NM_004656.3	115	aTGAAGGACTTCACCAag/aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0023634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	155	646	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916836	178916836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1551	152	649	0	ENST00000263967.3:c.223C>G	p.Gln75Glu	p.Q75E	ENST00000263967	NM_006218.2	75	Caa/Gaa																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15841301	15841301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	114	563	0	ENST00000307771.7:c.1385G>A	p.Arg462Gln	p.R462Q	ENST00000307771	NM_005089.3	462	cGa/cAa																																																																														
SETD8	0	MSKCC	GRCh37	12	123874031	123874031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	10	54	2	ENST00000330479.4:c.62C>T	p.Ala21Val	p.A21V	ENST00000330479	NM_020382.3	21	gCg/gTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434307	49434307	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	32	787	0	ENST00000301067.7:c.7246C>T	p.Gln2416Ter	p.Q2416*	ENST00000301067	NM_003482.3	2416	Cag/Tag																																																																														
BRCA1	0	MSKCC	GRCh37	17	41276091	41276091	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	209	544	2	ENST00000357654.3:c.23T>A	p.Val8Asp	p.V8D	ENST00000357654	NM_007294.3	8	gTt/gAt																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4090673	4090673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	129	684	0	ENST00000262948.5:c.1126G>A	p.Glu376Lys	p.E376K	ENST00000262948	NM_030662.3	376	Gaa/Aaa																																																																														
XPO1	0	MSKCC	GRCh37	2	61719241	61719241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	126	528	0	ENST00000401558.2:c.1816G>C	p.Glu606Gln	p.E606Q	ENST00000401558	NM_003400.3	606	Gaa/Caa																																																																														
CASP8	0	MSKCC	GRCh37	2	202150003	202150003	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	131	563	1	ENST00000358485.4:c.1444C>T	p.Gln482Ter	p.Q482*	ENST00000358485	NM_001080125.1	482	Cag/Tag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212285227	212285227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	30	538	0	ENST00000342788.4:c.3074C>T	p.Pro1025Leu	p.P1025L	ENST00000342788	NM_005235.2	1025	cCt/cTt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30648378	30648378	+	start_lost	Translation_Start_Site	SNP	G	G	C			P-0023634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	68	354	0	ENST00000359013.4:c.3G>C	p.Met1?	p.M1?	ENST00000359013	NM_001024847.2	1	atG/atC																																																																														
FAM175A	0	MSKCC	GRCh37	4	84383885	84383885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	138	594	0	ENST00000321945.7:c.967C>G	p.Leu323Val	p.L323V	ENST00000321945	NM_139076.2	323	Ctg/Gtg																																																																														
MED12	0	MSKCC	GRCh37	X	70348217	70348217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023634-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	144	660	0	ENST00000374080.3:c.3281G>A	p.Gly1094Glu	p.G1094E	ENST00000374080		1094	gGa/gAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	101	615	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	65	419	2	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	70	417	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	66	389	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																																																														
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	188	816	2	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	85	517	2	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																																																														
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	85	501	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89720857	89720857	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	76	357	0	ENST00000371953.3:c.1008C>G	p.Tyr336Ter	p.Y336*	ENST00000371953	NM_000314.4	336	taC/taG																																																																														
PTPRS	0	MSKCC	GRCh37	19	5210755	5210755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	224	693	1	ENST00000357368.4:c.5296C>T	p.Arg1766Cys	p.R1766C	ENST00000357368	NM_002850.3	1766	Cgc/Tgc																																																																														
DIS3	0	MSKCC	GRCh37	13	73346884	73346884	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	64	368	1	ENST00000377767.4:c.1333del	p.Ser445HisfsTer20	p.S445Hfs*20	ENST00000377767	NM_014953.3	445	Tca/ca																																																																														
BCL6	0	MSKCC	GRCh37	3	187446269	187446270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	150	635	0	ENST00000232014.4:c.1418dupC	p.Lys474GlufsTer26	p.K474Efs*26	ENST00000232014	NM_001130845.1	473	ccg/ccCg																																																																														
TCF3	0	MSKCC	GRCh37	19	1627375	1627375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	99	672	0	ENST00000344749.5:c.349G>A	p.Val117Met	p.V117M	ENST00000344749	NM_001136139.2	117	Gtg/Atg																																																																														
FLCN	201163	MSKCC	GRCh37	17	17119708	17119709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs80338682		P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	122	496	7	ENST00000285071.4:c.1285dup	p.His429ProfsTer27	p.H429Pfs*27	ENST00000285071	NM_144997.5	429	cac/cCac																																																																														
RAD50	0	MSKCC	GRCh37	5	131944382	131944382	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	98	461	4	ENST00000265335.6:c.2801delA	p.Asn934IlefsTer6	p.N934Ifs*6	ENST00000265335		932	Aaa/aa																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	271	505	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																																																														
PTCH1	0	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	100	354	1	ENST00000331920.6:c.114delG	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64132896	64132896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	75	677	0	ENST00000334205.4:c.1034del	p.Pro345LeufsTer30	p.P345Lfs*30	ENST00000334205	NM_003942.2	344	Ccc/cc																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911311	29911311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	70	558	3	ENST00000376809.5:c.610C>T	p.Gln204Ter	p.Q204*	ENST00000376809	NM_002116.7	204	Cag/Tag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	105	461	2	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5239002	5239002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	54	674	1	ENST00000357368.4:c.1777C>T	p.Arg593Cys	p.R593C	ENST00000357368	NM_002850.3	593	Cgc/Tgc																																																																														
FLT4	0	MSKCC	GRCh37	5	180038451	180038451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	152	685	1	ENST00000261937.6:c.3566G>A	p.Arg1189His	p.R1189H	ENST00000261937	NM_182925.4	1189	cGc/cAc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831386	72831388	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	47	392	2	ENST00000268489.5:c.5193_5195del	p.Gln1741del	p.Q1741del	ENST00000268489	NM_006885.3	1731	caGCAa/caa																																																																														
XPO1	0	MSKCC	GRCh37	2	61726051	61726052	+	splice_region_variant,intron_variant	Splice_Region	DEL	AA	AA	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	80	410	2	ENST00000401558.2:c.591-4_591-3delTT		p.X197_splice	ENST00000401558	NM_003400.3	197																																																																															
CARM1	0	MSKCC	GRCh37	19	11019828	11019828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	170	601	0	ENST00000327064.4:c.503G>A	p.Arg168Gln	p.R168Q	ENST00000327064	NM_199141.1	168	cGg/cAg																																																																														
PRKCI	5584	MSKCC	GRCh37	3	169998128	169998128	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs753143066		P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	122	727	4	ENST00000295797.4:c.826del	p.Thr276GlnfsTer7	p.T276Qfs*7	ENST00000295797	NM_002740.5	273	ttA/tt																																																																														
ARID2	0	MSKCC	GRCh37	12	46230692	46230692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	90	579	3	ENST00000334344.6:c.941G>A	p.Arg314His	p.R314H	ENST00000334344	NM_152641.2	314	cGt/cAt																																																																														
BCL6	0	MSKCC	GRCh37	3	187447565	187447565	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151194132		P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	133	527	0	ENST00000232014.4:c.628G>A	p.Asp210Asn	p.D210N	ENST00000232014	NM_001130845.1	210	Gat/Aat																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49420204	49420204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	64	714	0	ENST00000301067.7:c.15545del	p.Gly5182AlafsTer61	p.G5182Afs*61	ENST00000301067	NM_003482.3	5182	gGc/gc																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186504375	186504375	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	36	431	0	ENST00000323963.5:c.716del	p.Lys239ArgfsTer4	p.K239Rfs*4	ENST00000323963		238	Aaa/aa																																																																														
MEF2B	0	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	42	581	0	ENST00000162023.5:c.943_944dup	p.Val316GlnfsTer?	p.V316Qfs*?	ENST00000162023		315	cca/ccCCa																																																																														
IRS2	0	MSKCC	GRCh37	13	110436297	110436302	+	inframe_deletion	In_Frame_Del	DEL	CGGCGG	CGGCGG	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	69	384	0	ENST00000375856.3:c.2099_2104del	p.Ala700_Ala701del	p.A700_A701del	ENST00000375856	NM_003749.2	700	gCCGCCGtg/gtg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3778282	3778282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	66	669	1	ENST00000262367.5:c.6766del	p.Leu2256SerfsTer46	p.L2256Sfs*46	ENST00000262367	NM_004380.2	2256	Ctc/tc																																																																														
STAT5A	6776	MSKCC	GRCh37	17	40453399	40453399	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs759027671		P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	232	885	7	ENST00000345506.4:c.1102del	p.Gln368ArgfsTer2	p.Q368Rfs*2	ENST00000345506	NM_003152.3	366	Ccc/cc																																																																														
SPEN	0	MSKCC	GRCh37	1	16256831	16256831	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	731	148	0	ENST00000375759.3:c.4096C>T	p.Arg1366Ter	p.R1366*	ENST00000375759	NM_015001.2	1366	Cga/Tga																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18716356	18716356	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	105	562	0	ENST00000266497.5:c.3703A>G	p.Thr1235Ala	p.T1235A	ENST00000266497		1235	Aca/Gca																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49438262	49438262	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	165	672	0	ENST00000301067.7:c.5007del	p.Val1670SerfsTer52	p.V1670Sfs*52	ENST00000301067	NM_003482.3	1669	ccC/cc																																																																														
PTPN11	0	MSKCC	GRCh37	12	112940021	112940021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	83	715	0	ENST00000351677.2:c.1673G>A	p.Ser558Asn	p.S558N	ENST00000351677	NM_002834.3	558	aGc/aAc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99478167	99478167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	99	503	0	ENST00000268035.6:c.3071A>G	p.Asp1024Gly	p.D1024G	ENST00000268035	NM_000875.3	1024	gAt/gGt																																																																														
TSC2	0	MSKCC	GRCh37	16	2134574	2134574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	194	777	1	ENST00000219476.3:c.4351C>T	p.Arg1451Cys	p.R1451C	ENST00000219476	NM_000548.3	1451	Cgc/Tgc																																																																														
PALB2	0	MSKCC	GRCh37	16	23634450	23634450	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	115	462	0	ENST00000261584.4:c.2836G>A	p.Ala946Thr	p.A946T	ENST00000261584	NM_024675.3	946	Gca/Aca																																																																														
FANCA	0	MSKCC	GRCh37	16	89836279	89836279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	130	822	0	ENST00000389301.3:c.2470T>C	p.Cys824Arg	p.C824R	ENST00000389301	NM_000135.2	824	Tgt/Cgt																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984840	11984840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	84	403	0	ENST00000353533.5:c.386C>T	p.Ala129Val	p.A129V	ENST00000353533	NM_003010.3	129	gCa/gTa																																																																														
NCOR1	0	MSKCC	GRCh37	17	16029396	16029396	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	115	689	0	ENST00000268712.3:c.1634A>C	p.Lys545Thr	p.K545T	ENST00000268712	NM_006311.3	545	aAa/aCa																																																																														
RNF43	0	MSKCC	GRCh37	17	56440951	56440951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	139	569	2	ENST00000407977.2:c.386C>T	p.Ala129Val	p.A129V	ENST00000407977		129	gCg/gTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5231398	5231398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	56	726	3	ENST00000357368.4:c.2078G>A	p.Arg693His	p.R693H	ENST00000357368	NM_002850.3	693	cGc/cAc																																																																														
INSR	0	MSKCC	GRCh37	19	7143094	7143094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	85	507	0	ENST00000302850.5:c.2275C>T	p.Arg759Trp	p.R759W	ENST00000302850	NM_000208.2	759	Cgg/Tgg																																																																														
INSR	0	MSKCC	GRCh37	19	7174701	7174701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	107	689	0	ENST00000302850.5:c.1016G>A	p.Cys339Tyr	p.C339Y	ENST00000302850	NM_000208.2	339	tGc/tAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11096051	11096051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	141	740	1	ENST00000344626.4:c.325C>A	p.Pro109Thr	p.P109T	ENST00000344626	NM_003072.3	109	Ccg/Acg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11114058	11114060	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	639	85	0	ENST00000344626.4:c.1992_1994del	p.Glu672del	p.E672del	ENST00000344626	NM_003072.3	662	tcAGAa/tca																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273793	18273793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	659	151	0	ENST00000222254.8:c.1126A>G	p.Lys376Glu	p.K376E	ENST00000222254	NM_005027.3	376	Aag/Gag																																																																														
CCNE1	0	MSKCC	GRCh37	19	30312915	30312915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	109	613	1	ENST00000262643.3:c.718C>T	p.Arg240Cys	p.R240C	ENST00000262643	NM_001238.2	240	Cgt/Tgt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210725	36210725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	690	113	2	ENST00000222270.7:c.481del	p.Leu161PhefsTer6	p.L161Ffs*6	ENST00000222270	NM_014727.1	159	aCc/ac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211939	36211939	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	847	235	3	ENST00000222270.7:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000222270	NM_014727.1	564	Cga/Tga																																																																														
EP300	0	MSKCC	GRCh37	22	41521966	41521966	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	43	709	0	ENST00000263253.7:c.832delA	p.Thr278LeufsTer39	p.T278Lfs*39	ENST00000263253	NM_001429.3	276	acA/ac																																																																														
EP300	0	MSKCC	GRCh37	22	41572820	41572820	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	745	179	1	ENST00000263253.7:c.5105A>G	p.Asp1702Gly	p.D1702G	ENST00000263253	NM_001429.3	1702	gAc/gGc																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665504	138665504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	80	597	0	ENST00000330315.3:c.61G>A	p.Gly21Ser	p.G21S	ENST00000330315	NM_023067.3	21	Ggt/Agt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156703	55156703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	443	95	1	ENST00000257290.5:c.3104G>A	p.Gly1035Asp	p.G1035D	ENST00000257290	NM_006206.4	1035	gGc/gAc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950111	38950112	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	645	132	0	ENST00000357387.3:c.3838_3839del	p.Ser1280GlnfsTer18	p.S1280Qfs*18	ENST00000357387	NM_152756.3	1280	TCc/c																																																																														
APC	0	MSKCC	GRCh37	5	112173375	112173375	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	410	31	0	ENST00000257430.4:c.2084A>G	p.Gln695Arg	p.Q695R	ENST00000257430	NM_000038.5	695	cAg/cGg																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197223	26197223	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	111	606	0	ENST00000356476.2:c.256C>T	p.Gln86Ter	p.Q86*	ENST00000356476		86	Cag/Tag																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323148	31323148	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	760	202	1	ENST00000412585.2:c.841T>G	p.Tyr281Asp	p.Y281D	ENST00000412585	NM_005514.6	281	Tac/Gac																																																																														
SMO	0	MSKCC	GRCh37	7	128829014	128829014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	41	89	0	ENST00000249373.3:c.22C>T	p.Arg8Trp	p.R8W	ENST00000249373	NM_005631.4	8	Cgg/Tgg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151884798	151884798	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	443	37	0	ENST00000262189.6:c.4793+2T>C		p.X1598_splice	ENST00000262189	NM_170606.2	1598																																																																															
PTPRD	0	MSKCC	GRCh37	9	8375991	8375991	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200669619		P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	93	445	0	ENST00000356435.5:c.4606C>T	p.Arg1536Cys	p.R1536C	ENST00000356435		1536	Cgt/Tgt																																																																														
TEK	0	MSKCC	GRCh37	9	27203105	27203105	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	603	135	0	ENST00000380036.4:c.2197C>A	p.Pro733Thr	p.P733T	ENST00000380036	NM_000459.3	733	Cca/Aca																																																																														
BCOR	0	MSKCC	GRCh37	X	39916498	39916498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	190	784	0	ENST00000378444.4:c.4505A>G	p.His1502Arg	p.H1502R	ENST00000378444	NM_001123385.1	1502	cAt/cGt																																																																														
BCOR	0	MSKCC	GRCh37	X	39932963	39932963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	648	155	0	ENST00000378444.4:c.1636C>T	p.Arg546Cys	p.R546C	ENST00000378444	NM_001123385.1	546	Cgc/Tgc																																																																														
RBM10	0	MSKCC	GRCh37	X	47040765	47040765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	137	775	1	ENST00000329236.7:c.1166G>A	p.Gly389Asp	p.G389D	ENST00000329236	NM_001204466.1	389	gGc/gAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76939136	76939136	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023639-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	627	111	1	ENST00000373344.5:c.1612G>T	p.Val538Phe	p.V538F	ENST00000373344	NM_000489.3	538	Gtt/Ttt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	146	658	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	156	524	0				ENST00000310581	NM_198253.2																																																																																
NFE2L2	0	MSKCC	GRCh37	2	178098551	178098878	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGGTTGGGTACTGAACTCAGGTTAGGTACTGAACTCATCAGGAGGCTGAGGTTGGAAAGTAGATTTGACAAGGTTAAGTAAAAGAAAGGCAAAGCTGGAACTCAAATCCAGATATTTTAATTCCTTGCTCAGTGTTTCCTTAAACCTGCCATAACTTTCCCAAGAACTGAGTACTCTGTACCTGGGAGTAGTTGGCAGATCCACTGGTTTCTGACTGGATGTGCTGGGCTGGCTGAATTGGGAGAAATTCACCTGTCTCTTCATCTAGTTGTAACTGAGCGAAAAAGGCTTTCTCTTGCTCCTTTTGGAGTTGTTCTTGTCTTTCCT	TAGGTTGGGTACTGAACTCAGGTTAGGTACTGAACTCATCAGGAGGCTGAGGTTGGAAAGTAGATTTGACAAGGTTAAGTAAAAGAAAGGCAAAGCTGGAACTCAAATCCAGATATTTTAATTCCTTGCTCAGTGTTTCCTTAAACCTGCCATAACTTTCCCAAGAACTGAGTACTCTGTACCTGGGAGTAGTTGGCAGATCCACTGGTTTCTGACTGGATGTGCTGGGCTGGCTGAATTGGGAGAAATTCACCTGTCTCTTCATCTAGTTGTAACTGAGCGAAAAAGGCTTTCTCTTGCTCCTTTTGGAGTTGTTCTTGTCTTTCCT	-			P-0023640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	30	29	0	ENST00000397062.3:c.167_312+182del		p.X56_splice	ENST00000397062	NM_006164.4	56																																																																															
ANKRD11	0	MSKCC	GRCh37	16	89348566	89348568	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0023641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	73	1060	2	ENST00000301030.4:c.4382_4384delAGA	p.Lys1461del	p.K1461del	ENST00000301030	NM_001256183.1	1461	aAGAga/aga																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927985	+	inframe_deletion	In_Frame_Del	DEL	TGTCCA	TGTCCA	-			P-0023641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	106	335	0	ENST00000263967.3:c.1259_1264del	p.Cys420_Pro421del	p.C420_P421del	ENST00000263967	NM_006218.2	420	TGTCCA/-																																																																														
DOT1L	0	MSKCC	GRCh37	19	2193750	2193750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	189	691	0	ENST00000398665.3:c.556G>C	p.Glu186Gln	p.E186Q	ENST00000398665	NM_032482.2	186	Gag/Cag																																																																														
RYBP	0	MSKCC	GRCh37	3	72428494	72428496	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0023641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	608	82	0	ENST00000477973.2:c.506_508del	p.Lys170del	p.K170del	ENST00000477973	NM_012234.5	170	AAG/-																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267360	198267360	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	16	631	0	ENST00000335508.6:c.1997A>C	p.Lys666Thr	p.K666T	ENST00000335508	NM_012433.2	666	aAg/aCg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106989	27107026	+	frameshift_variant	Frame_Shift_Del	DEL	GGACAGCCTTGCCGCCACACAGTTCCAGCAGAGCCAGG	GGACAGCCTTGCCGCCACACAGTTCCAGCAGAGCCAGG	-			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	65	591	0	ENST00000324856.7:c.6600_6637del	p.Glu2200AspfsTer12	p.E2200Dfs*12	ENST00000324856	NM_006015.4	2200	gaGGACAGCCTTGCCGCCACACAGTTCCAGCAGAGCCAGGcc/gacc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18715672	18715672	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	448	133	1	ENST00000266497.5:c.3503A>T	p.Lys1168Ile	p.K1168I	ENST00000266497		1168	aAa/aTa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32937630	32937630	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	79	627	4	ENST00000380152.3:c.8292del	p.Cys2765ValfsTer12	p.C2765Vfs*12	ENST00000380152		2764	gCc/gc																																																																														
EZH1	0	MSKCC	GRCh37	17	40876429	40876429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	718	47	2	ENST00000428826.2:c.260G>C	p.Ser87Thr	p.S87T	ENST00000428826		87	aGc/aCc																																																																														
CIC	0	MSKCC	GRCh37	19	42796478	42796517	+	frameshift_variant	Frame_Shift_Del	DEL	GGCACGCGCTGCCCCTGGGTACCAGCCCTGCGTCCAGCCA	GGCACGCGCTGCCCCTGGGTACCAGCCCTGCGTCCAGCCA	-			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	836	126	4	ENST00000575354.2:c.3038_3077del	p.His1013LeufsTer13	p.H1013Lfs*13	ENST00000575354	NM_015125.3	1012	gGGCACGCGCTGCCCCTGGGTACCAGCCCTGCGTCCAGCCAg/gg																																																																														
TOP1	0	MSKCC	GRCh37	20	39708772	39708772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	229	552	1	ENST00000361337.2:c.383C>T	p.Pro128Leu	p.P128L	ENST00000361337	NM_003286.2	128	cCt/cTt																																																																														
RASA1	0	MSKCC	GRCh37	5	86670656	86670656	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	392	70	1	ENST00000274376.6:c.1935-1G>T		p.X645_splice	ENST00000274376	NM_002890.2	645																																																																															
APC	0	MSKCC	GRCh37	5	112164609	112164609	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	24	519	0	ENST00000257430.4:c.1683del	p.Thr562ArgfsTer8	p.T562Rfs*8	ENST00000257430	NM_000038.5	561	aaG/aa																																																																														
APC	0	MSKCC	GRCh37	5	112177025	112177030	+	inframe_deletion	In_Frame_Del	DEL	GCTATT	GCTATT	-			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	36	614	1	ENST00000257430.4:c.5736_5741del	p.Ile1913_Ala1914del	p.I1913_A1914del	ENST00000257430	NM_000038.5	1912	GCTATT/-																																																																														
APC	0	MSKCC	GRCh37	5	112177633	112177633	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	19	442	0	ENST00000257430.4:c.6344del	p.Leu2115TyrfsTer24	p.L2115Yfs*24	ENST00000257430	NM_000038.5	2114	agT/ag																																																																														
APC	0	MSKCC	GRCh37	5	112177863	112177864	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAA			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	24	407	0	ENST00000257430.4:c.6576_6579dup	p.Val2194LysfsTer4	p.V2194Kfs*4	ENST00000257430	NM_000038.5	2191	gga/ggAAAAa																																																																														
ROS1	0	MSKCC	GRCh37	6	117686369	117686369	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	69	338	0	ENST00000368508.3:c.2974-2A>G		p.X992_splice	ENST00000368508	NM_002944.2	992																																																																															
PRDM14	0	MSKCC	GRCh37	8	70978662	70978662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	115	741	4	ENST00000276594.2:c.991G>A	p.Ala331Thr	p.A331T	ENST00000276594	NM_024504.3	331	Gcc/Acc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740618	145740618	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	84	704	2	ENST00000428558.2:c.1399del	p.Ala467LeufsTer91	p.A467Lfs*91	ENST00000428558	NM_004260.3	467	Gct/ct																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	160	442	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	79	466	0				ENST00000310581	NM_198253.2																																																																																
PTEN	0	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	77	379	0	ENST00000371953.3:c.380G>A	p.Gly127Glu	p.G127E	ENST00000371953	NM_000314.4	127	gGa/gAa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016609	12016609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	82	540	0	ENST00000353533.5:c.745G>T	p.Gly249Cys	p.G249C	ENST00000353533	NM_003010.3	249	Ggc/Tgc																																																																														
STK19	0	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	128	711	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																																																														
ATM	0	MSKCC	GRCh37	11	108202178	108202178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	39	437	0	ENST00000278616.4:c.7523G>A	p.Gly2508Glu	p.G2508E	ENST00000278616	NM_000051.3	2508	gGa/gAa																																																																														
DNMT1	0	MSKCC	GRCh37	19	10262217	10262217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	84	604	0	ENST00000340748.4:c.2074C>T	p.Pro692Ser	p.P692S	ENST00000340748		692	Ccc/Tcc																																																																														
CENPA	0	MSKCC	GRCh37	2	27009100	27009101	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0023645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	58	237	0	ENST00000335756.4:c.36_37delinsTT	p.Pro13Ser	p.P13S	ENST00000335756	NM_001809.3	12	gcCCcg/gcTTcg																																																																														
MET	0	MSKCC	GRCh37	7	116395464	116395464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	114	496	0	ENST00000397752.3:c.1757G>C	p.Trp586Ser	p.W586S	ENST00000397752	NM_000245.2	586	tGg/tCg																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23540374	23540374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	86	395	0	ENST00000380871.4:c.29G>A	p.Gly10Glu	p.G10E	ENST00000380871	NM_006167.3	10	gGg/gAg																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981881	70981881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	471	630	1	ENST00000276594.2:c.215G>A	p.Arg72Gln	p.R72Q	ENST00000276594	NM_024504.3	72	cGg/cAg																																																																														
AMER1	0	MSKCC	GRCh37	X	63410414	63410414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	97	624	0	ENST00000330258.3:c.2753C>T	p.Ser918Phe	p.S918F	ENST00000330258	NM_152424.3	918	tCt/tTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	221	336	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	217	652	0	ENST00000358487.5:c.1647T>G	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaG																																																																														
APC	0	MSKCC	GRCh37	5	112178805	112178805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147549623		P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	203	580	2	ENST00000257430.4:c.7514G>A	p.Arg2505Gln	p.R2505Q	ENST00000257430	NM_000038.5	2505	cGa/cAa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	202	889	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	158	722	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																																																														
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	223	624	0	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																																																														
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	117	380	4	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	244	723	0	ENST00000397062.3:c.246A>T	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaT																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	289	750	7	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
FAT1	0	MSKCC	GRCh37	4	187627774	187627774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	240	675	3	ENST00000441802.2:c.3208C>T	p.Arg1070Ter	p.R1070*	ENST00000441802	NM_005245.3	1070	Cga/Tga																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	184	554	0	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																														
MLL2	0	MSKCC	GRCh37	12	49420253	49420253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	59	569	2	ENST00000301067.7:c.15496G>A	p.Ala5166Thr	p.A5166T	ENST00000301067	NM_003482.3	5166	Gct/Act																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088659	27088659	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	209	657	0	ENST00000324856.7:c.2272delC	p.Gln758ArgfsTer75	p.Q758Rfs*75	ENST00000324856	NM_006015.4	756	aaC/aa																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780882	9780882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	199	603	0	ENST00000377346.4:c.1604G>T	p.Arg535Leu	p.R535L	ENST00000377346	NM_005026.3	535	cGg/cTg																																																																														
PARP1	0	MSKCC	GRCh37	1	226595512	226595512	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	69	432	0	ENST00000366794.5:c.119A>G	p.Gln40Arg	p.Q40R	ENST00000366794	NM_001618.3	40	cAg/cGg																																																																														
CASP8	0	MSKCC	GRCh37	2	202131330	202131330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	135	423	0	ENST00000358485.4:c.298G>A	p.Ala100Thr	p.A100T	ENST00000358485	NM_001080125.1	100	Gcc/Acc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178938892	178938892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	35	110	0	ENST00000263967.3:c.2134C>A	p.Leu712Ile	p.L712I	ENST00000263967	NM_006218.2	712	Ctc/Atc																																																																														
KDR	0	MSKCC	GRCh37	4	55979552	55979552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	205	683	0	ENST00000263923.4:c.895C>T	p.Arg299Trp	p.R299W	ENST00000263923	NM_002253.2	299	Cgg/Tgg																																																																														
FAT1	0	MSKCC	GRCh37	4	187629100	187629100	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	109	490	0	ENST00000441802.2:c.1882C>T	p.Arg628Ter	p.R628*	ENST00000441802	NM_005245.3	628	Cga/Tga																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950304	38950304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	163	560	2	ENST00000357387.3:c.3646C>T	p.Arg1216Cys	p.R1216C	ENST00000357387	NM_152756.3	1216	Cgt/Tgt																																																																														
RICTOR	0	MSKCC	GRCh37	5	38952420	38952420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	140	490	0	ENST00000357387.3:c.3005C>A	p.Pro1002Gln	p.P1002Q	ENST00000357387	NM_152756.3	1002	cCa/cAa																																																																														
MLL3	0	MSKCC	GRCh37	7	151877821	151877821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	164	558	1	ENST00000262189.6:c.7124A>G	p.Gln2375Arg	p.Q2375R	ENST00000262189	NM_170606.2	2375	cAa/cGa																																																																														
CCND1	0	MSKCC	GRCh37	11	69465888	69465888	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	203	572	0	ENST00000227507.2:c.726C>A	p.Asp242Glu	p.D242E	ENST00000227507	NM_053056.2	242	gaC/gaA																																																																														
POLE	0	MSKCC	GRCh37	12	133249373	133249373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	219	523	1	ENST00000320574.5:c.1526C>T	p.Ala509Val	p.A509V	ENST00000320574	NM_006231.2	509	gCc/gTc																																																																														
SUZ12	0	MSKCC	GRCh37	17	30310083	30310083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	16	25	0	ENST00000322652.5:c.983G>A	p.Ser328Asn	p.S328N	ENST00000322652	NM_015355.2	328	aGc/aAc																																																																														
SOX9	0	MSKCC	GRCh37	17	70117678	70117678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	191	607	0	ENST00000245479.2:c.146A>G	p.Gln49Arg	p.Q49R	ENST00000245479	NM_000346.3	49	cAg/cGg																																																																														
MED12	0	MSKCC	GRCh37	X	70348462	70348463	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1342	122	743	0	ENST00000374080.3:c.3371_3372del	p.Phe1124SerfsTer2	p.F1124Sfs*2	ENST00000374080		1123	tcTTtt/tctt																																																																														
PBRM1	0	MSKCC	GRCh37	3	52692236	52692236	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	173	625	0	ENST00000394830.3:c.624delT	p.Gln209ArgfsTer15	p.Q209Rfs*15	ENST00000394830	NM_018313.4	208	ttT/tt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087513	27087513	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	276	615	0	ENST00000324856.7:c.2090del	p.Pro697ArgfsTer45	p.P697Rfs*45	ENST00000324856	NM_006015.4	696	tCc/tc																																																																														
GPS2	0	MSKCC	GRCh37	17	7216734	7216739	+	inframe_deletion	In_Frame_Del	DEL	TAGGGC	TAGGGC	-			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	255	821	0	ENST00000380728.2:c.684_689del	p.Gln228_Tyr230delinsHis	p.Q228_Y230delinsH	ENST00000380728		228	caGCCCTAt/cat																																																																														
JAK1	0	MSKCC	GRCh37	1	65307280	65307283	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0012819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	105	286	1	ENST00000342505.4:c.2405_2408delAAGA	p.Lys802ArgfsTer11	p.K802Rfs*11	ENST00000342505	NM_002227.2	802	aAAGAg/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7578526	7578527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	423	992	0	ENST00000269305.4:c.403dupT	p.Cys135LeufsTer14	p.C135Lfs*14	ENST00000269305	NM_001126112.2	135	tgc/tTgc																																																																														
PTEN	0	MSKCC	GRCh37	10	89720854	89720872	+	frameshift_variant	Frame_Shift_Del	DEL	ATACTTTTCTCCAAATTTT	ATACTTTTCTCCAAATTTT	-			P-0022282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	58	474	0	ENST00000371953.3:c.1006_1024del	p.Tyr336ArgfsTer2	p.Y336Rfs*2	ENST00000371953	NM_000314.4	335	cgATACTTTTCTCCAAATTTT/cg																																																																														
TCF3	0	MSKCC	GRCh37	19	1619344	1619344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	310	781	0	ENST00000344749.5:c.1297A>G	p.Met433Val	p.M433V	ENST00000344749	NM_001136139.2	433	Atg/Gtg																																																																														
TBX3	0	MSKCC	GRCh37	12	115118729	115118729	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	174	689	0	ENST00000257566.3:c.612C>G	p.Phe204Leu	p.F204L	ENST00000257566	NM_016569.3	204	ttC/ttG																																																																														
CDK8	0	MSKCC	GRCh37	13	26928009	26928015	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AGAGATT	AGAGATT	-			P-0022335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	86	591	0	ENST00000381527.3:c.448_454del	p.Arg150Ter	p.R150*	ENST00000381527	NM_001260.1	150	AGAGATTtg/tg																																																																														
CDH1	0	MSKCC	GRCh37	16	68845693	68845694	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	177	894	0	ENST00000261769.5:c.944dup	p.Asn315LysfsTer6	p.N315Kfs*6	ENST00000261769	NM_004360.3	313	-/A																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965878	25965878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	152	737	0	ENST00000435504.4:c.3328T>C	p.Phe1110Leu	p.F1110L	ENST00000435504		1110	Ttt/Ctt																																																																														
ERCC3	0	MSKCC	GRCh37	2	128044479	128044480	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0022335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	156	735	0	ENST00000285398.2:c.1141_1142del	p.Trp381ValfsTer4	p.W381Vfs*4	ENST00000285398	NM_000122.1	381	TGg/g																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56155650	56155650	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	127	516	1	ENST00000399503.3:c.742C>T	p.Arg248Ter	p.R248*	ENST00000399503	NM_005921.1	248	Cga/Tga																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860347	151860347	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022335-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	133	588	0	ENST00000262189.6:c.10315T>G	p.Ser3439Ala	p.S3439A	ENST00000262189	NM_170606.2	3439	Tct/Gct																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	113	919	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0023569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	27	501	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850887	63850887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	20	595	0	ENST00000279873.7:c.1665G>T	p.Leu555Phe	p.L555F	ENST00000279873	NM_032199.2	555	ttG/ttT																																																																														
TET1	0	MSKCC	GRCh37	10	70446144	70446144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	16	720	0	ENST00000373644.4:c.5084C>T	p.Ser1695Phe	p.S1695F	ENST00000373644	NM_030625.2	1695	tCt/tTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424999	49424999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	13	955	1	ENST00000301067.7:c.13489G>T	p.Gly4497Trp	p.G4497W	ENST00000301067	NM_003482.3	4497	Ggg/Tgg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32915229	32915229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	41	820	0	ENST00000380152.3:c.6737C>G	p.Pro2246Arg	p.P2246R	ENST00000380152		2246	cCa/cGa																																																																														
BRIP1	0	MSKCC	GRCh37	17	59820448	59820448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	27	818	0	ENST00000259008.2:c.2305C>A	p.Leu769Met	p.L769M	ENST00000259008	NM_032043.2	769	Ctg/Atg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980602	1980602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	24	666	1	ENST00000382891.5:c.4064G>A	p.Arg1355Gln	p.R1355Q	ENST00000382891	NM_133335.3	1355	cGg/cAg																																																																														
SMO	0	MSKCC	GRCh37	7	128846380	128846380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	39	860	1	ENST00000249373.3:c.1216G>A	p.Ala406Thr	p.A406T	ENST00000249373	NM_005631.4	406	Gcc/Acc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70964500	70964500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	20	897	0	ENST00000276594.2:c.1528C>A	p.Gln510Lys	p.Q510K	ENST00000276594	NM_024504.3	510	Cag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578494	7578494	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			457	74	878	0	ENST00000269305.4:c.436T>G	p.Trp146Gly	p.W146G	ENST00000269305	NM_001126112.2	146	Tgg/Ggg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18496263	18496263	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			406	41	467	1	ENST00000266497.5:c.1402del	p.Tyr468IlefsTer11	p.Y468Ifs*11	ENST00000266497		466	aaT/aa																																																																														
FLT1	0	MSKCC	GRCh37	13	29001930	29001930	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	38	560	0	ENST00000282397.4:c.1235C>A	p.Ser412Ter	p.S412*	ENST00000282397	NM_002019.4	412	tCa/tAa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144823	11144823	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	59	611	2	ENST00000344626.4:c.3898G>T	p.Glu1300Ter	p.E1300*	ENST00000344626	NM_003072.3	1300	Gag/Tag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391052	89391052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	31	707	0	ENST00000336596.2:c.1118G>T	p.Cys373Phe	p.C373F	ENST00000336596	NM_005233.5	373	tGt/tTt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31401629	31401629	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	35	663	0	ENST00000344624.3:c.4035A>C	p.Glu1345Asp	p.E1345D	ENST00000344624		1345	gaA/gaC																																																																														
NSD1	0	MSKCC	GRCh37	5	176638153	176638153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	73	683	1	ENST00000439151.2:c.2753A>T	p.His918Leu	p.H918L	ENST00000439151	NM_022455.4	918	cAt/cTt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8317915	8317915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			279	34	498	1	ENST00000356435.5:c.5698G>T	p.Ala1900Ser	p.A1900S	ENST00000356435		1900	Gca/Tca																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139438556	139438556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			300	44	599	0	ENST00000277541.6:c.62-2A>G		p.X21_splice	ENST00000277541	NM_017617.3	21																																																																															
ATRX	0	MSKCC	GRCh37	X	76874439	76874439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			309	18	461	1	ENST00000373344.5:c.5283G>T	p.Met1761Ile	p.M1761I	ENST00000373344	NM_000489.3	1761	atG/atT																																																																														
RRAS2	0	MSKCC	GRCh37	11	14303226	14303226	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	22	802	0	ENST00000256196.4:c.449del	p.Lys150ArgfsTer2	p.K150Rfs*2	ENST00000256196		150	aAg/ag																																																																														
RRAS2	0	MSKCC	GRCh37	11	14303231	14303231	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	20	786	0	ENST00000256196.4:c.444G>C	p.Gln148His	p.Q148H	ENST00000256196		148	caG/caC																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715690	30715690	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	26	436	0	ENST00000359013.4:c.1423A>T	p.Met475Leu	p.M475L	ENST00000359013	NM_001024847.2	475	Atg/Ttg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89390186	89390186	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			336	20	397	0	ENST00000336596.2:c.937del	p.Ala313GlnfsTer24	p.A313Qfs*24	ENST00000336596	NM_005233.5	312	cGg/cg																																																																														
TERT	0	MSKCC	GRCh37	5	1293802	1293802	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			486	40	897	0	ENST00000310581.5:c.1199A>C	p.His400Pro	p.H400P	ENST00000310581	NM_198253.2	400	cAc/cCc																																																																														
PARK2	0	MSKCC	GRCh37	6	162683585	162683585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			358	19	542	0	ENST00000366898.1:c.384G>T	p.Arg128Ser	p.R128S	ENST00000366898	NM_004562.2	128	agG/agT																																																																														
ETV1	0	MSKCC	GRCh37	7	13946123	13946123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			359	38	608	3	ENST00000405192.2:c.973C>A	p.Pro325Thr	p.P325T	ENST00000405192	NM_001163147.1	325	Cct/Act																																																																														
INHBA	0	MSKCC	GRCh37	7	41729259	41729259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023406-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			281	21	415	0	ENST00000242208.4:c.1270G>T	p.Gly424Trp	p.G424W	ENST00000242208	NM_002192.2	424	Ggg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	72	580	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KIT	0	MSKCC	GRCh37	4	55593464	55593464	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs3822214		P-0023561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	9	549	0	ENST00000288135.5:c.1621A>C	p.Met541Leu	p.M541L	ENST00000288135	NM_000222.2	541	Atg/Ctg																																																																														
RFWD2	0	MSKCC	GRCh37	1	176176063	176176064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	61	897	0	ENST00000367669.3:c.51dup	p.Ser18ValfsTer60	p.S18Vfs*60	ENST00000367669	NM_022457.5	17	-/G																																																																														
KMT2C	0	MSKCC	GRCh37	7	151900099	151900099	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	52	787	0	ENST00000262189.6:c.4012del	p.Thr1338LeufsTer7	p.T1338Lfs*7	ENST00000262189	NM_170606.2	1338	Act/ct																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538923	23538923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	31	791	1	ENST00000380871.4:c.516C>A	p.Phe172Leu	p.F172L	ENST00000380871	NM_006167.3	172	ttC/ttA																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	530	620	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TSC1	0	MSKCC	GRCh37	9	135779103	135779103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	97	524	0	ENST00000298552.3:c.2143C>T	p.Arg715Trp	p.R715W	ENST00000298552	NM_001162426.1	715	Cgg/Tgg																																																																														
MUTYH	0	MSKCC	GRCh37	1	45797198	45797198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	99	738	0	ENST00000372115.3:c.1175C>T	p.Ser392Phe	p.S392F	ENST00000372115	NM_001048171.1	392	tCc/tTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923347	9923347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	86	670	1	ENST00000330684.3:c.1940C>A	p.Ala647Asp	p.A647D	ENST00000330684	NM_001134407.1	647	gCc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577554	7577559	+	inframe_deletion	In_Frame_Del	DEL	TGCAGG	TGCAGG	-			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	220	700	1	ENST00000269305.4:c.722_727del	p.Ser241_Met243delinsLeu	p.S241_M243delinsL	ENST00000269305	NM_001126112.2	241	tCCTGCAtg/ttg																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197079	26197079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	89	509	1	ENST00000356476.2:c.400G>A	p.Glu134Lys	p.E134K	ENST00000356476		134	Gag/Aag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500900	8500900	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	82	646	0	ENST00000356435.5:c.1982A>T	p.Glu661Val	p.E661V	ENST00000356435		661	gAg/gTg																																																																														
MED12	0	MSKCC	GRCh37	X	70344212	70344212	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023574-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	41	394	0	ENST00000374080.3:c.1948G>T	p.Glu650Ter	p.E650*	ENST00000374080		650	Gaa/Taa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	29	737	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																																																														
APC	0	MSKCC	GRCh37	5	112170683	112170683	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	19	584	1	ENST00000257430.4:c.1779G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tgG/tgA																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023459	27023459	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	27	796	0	ENST00000324856.7:c.565G>T	p.Gly189Cys	p.G189C	ENST00000324856	NM_006015.4	189	Ggc/Tgc																																																																														
KDM5A	0	MSKCC	GRCh37	12	402162	402162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	32	920	1	ENST00000399788.2:c.4629C>A	p.Asp1543Glu	p.D1543E	ENST00000399788	NM_001042603.1	1543	gaC/gaA																																																																														
ARID2	0	MSKCC	GRCh37	12	46231337	46231337	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	28	655	0	ENST00000334344.6:c.1177G>T	p.Glu393Ter	p.E393*	ENST00000334344	NM_152641.2	393	Gaa/Taa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52651404	52651404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	43	811	0	ENST00000394830.3:c.1692G>T	p.Glu564Asp	p.E564D	ENST00000394830	NM_018313.4	564	gaG/gaT																																																																														
EGFL7	0	MSKCC	GRCh37	9	139564101	139564101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	18	1001	1	ENST00000308874.7:c.241C>T	p.Pro81Ser	p.P81S	ENST00000308874		81	Cct/Tct																																																																														
AR	0	MSKCC	GRCh37	X	66765907	66765908	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0023575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	11	508	0	ENST00000374690.3:c.919_920delinsAA	p.Ala307Asn	p.A307N	ENST00000374690	NM_000044.3	307	GCt/AAt																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098957	178098957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	75	455	0	ENST00000397062.3:c.88C>T	p.Leu30Phe	p.L30F	ENST00000397062	NM_006164.4	30	Ctt/Ttt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	54	428	1	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																																																														
JAK1	0	MSKCC	GRCh37	1	65310503	65310503	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	70	697	0	ENST00000342505.4:c.2185A>T	p.Ser729Cys	p.S729C	ENST00000342505	NM_002227.2	729	Agt/Tgt																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877881	151877881	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	59	525	0	ENST00000262189.6:c.7064T>G	p.Leu2355Arg	p.L2355R	ENST00000262189	NM_170606.2	2355	cTt/cGt																																																																														
RECQL	0	MSKCC	GRCh37	12	21624581	21624581	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	88	615	0	ENST00000421138.2:c.1448C>T	p.Ala483Val	p.A483V	ENST00000421138		483	gCa/gTa																																																																														
INHBA	0	MSKCC	GRCh37	7	41730019	41730019	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	190	794	0	ENST00000242208.4:c.510del	p.Val171SerfsTer27	p.V171Sfs*27	ENST00000242208	NM_002192.2	170	aaA/aa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971167	21971167	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	163	640	0	ENST00000304494.5:c.191T>G	p.Leu64Arg	p.L64R	ENST00000304494	NM_000077.4	64	cTg/cGg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971167	21971167	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	163	640	0	ENST00000304494.5:c.191T>G	p.Leu64Arg	p.L64R	ENST00000304494	NM_000077.4	64	cTg/cGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	176	708	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KDM5A	0	MSKCC	GRCh37	12	472142	472142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	166	568	0	ENST00000399788.2:c.659G>A	p.Arg220His	p.R220H	ENST00000399788	NM_001042603.1	220	cGt/cAt																																																																														
PTPRS	0	MSKCC	GRCh37	19	5211707	5211707	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145108936		P-0023511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	180	819	1	ENST00000357368.4:c.5128C>T	p.Arg1710Cys	p.R1710C	ENST00000357368	NM_002850.3	1710	Cgc/Tgc																																																																														
APC	0	MSKCC	GRCh37	5	112175577	112175577	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	200	401	0	ENST00000257430.4:c.4288del	p.Thr1430ProfsTer43	p.T1430Pfs*43	ENST00000257430	NM_000038.5	1429	cAa/ca																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	231	768	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	475	725	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112174379	112174379	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	106	336	0	ENST00000257430.4:c.3088A>T	p.Lys1030Ter	p.K1030*	ENST00000257430	NM_000038.5	1030	Aaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112175541	112175542	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0023513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	126	430	0	ENST00000257430.4:c.4253_4254dup	p.Ser1419Ter	p.S1419*	ENST00000257430	NM_000038.5	1417	att/atTAt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16097778	16097778	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0023513-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	224	694	0	ENST00000268712.3:c.106C>T	p.Gln36Ter	p.Q36*	ENST00000268712	NM_006311.3	36	Cag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	468	835	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
APC	0	MSKCC	GRCh37	5	112175288	112175288	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	149	291	0	ENST00000257430.4:c.3997A>T	p.Lys1333Ter	p.K1333*	ENST00000257430	NM_000038.5	1333	Aaa/Taa																																																																														
APC	0	MSKCC	GRCh37	5	112174670	112174670	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	138	503	0	ENST00000257430.4:c.3379C>T	p.Gln1127Ter	p.Q1127*	ENST00000257430	NM_000038.5	1127	Cag/Tag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37872145	37872145	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142456637		P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			7580	1886	837	1	ENST00000269571.5:c.1466C>T	p.Pro489Leu	p.P489L	ENST00000269571		489	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577062	7577062	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	20	884	1	ENST00000269305.4:c.876A>T	p.Lys292Asn	p.K292N	ENST00000269305	NM_001126112.2	292	aaA/aaT																																																																														
ERBB2	0	MSKCC	GRCh37	17	37875531	37876056	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAAAAGAATATGGGTCCAGATCCATATGGATCCTAGATCCAGATCACGGTGTTAGAACATGGAAAAACATTGCAAGATTCTGCTAAGTGAAAAAAGCATTTGCAAACAGTATGTACAGTCTATATTCAGAGGAGGAACTGCTGGGTCATAGATGATATTTCATAGGTATTGCCAAACCGTTCTCTGGAGAAGTGGTATGGGTTTACCCTGGGATTCTTCTATGGAGGGAATAGTTGAGCTCCCGGGCTTGCTCTTCTGGGTGCCCCTCCCCGCTTCCTATCCACCACAAGGAGCTGCAGGGGAGCGGGGCATGCCGGTTCCTTGGCTGGAGAAGGAGTCTCCTTGTGAGGTGGTAGAAGGAGCACTGACGGCCTTGAGCCCAGTTTCTGCCTTTGTCAAATGGGGATAATGACCCAGCCACACCCCTCCCAGGGTTGTTGTGAGGCTGGAAAGGTGGTTCCCAAGAGGGTGGTTCCCAGAATTGTTGATGAGACTGTTTCTCCTGCAGCTGTGTGGACCTGGATG	AAAAAAGAATATGGGTCCAGATCCATATGGATCCTAGATCCAGATCACGGTGTTAGAACATGGAAAAACATTGCAAGATTCTGCTAAGTGAAAAAAGCATTTGCAAACAGTATGTACAGTCTATATTCAGAGGAGGAACTGCTGGGTCATAGATGATATTTCATAGGTATTGCCAAACCGTTCTCTGGAGAAGTGGTATGGGTTTACCCTGGGATTCTTCTATGGAGGGAATAGTTGAGCTCCCGGGCTTGCTCTTCTGGGTGCCCCTCCCCGCTTCCTATCCACCACAAGGAGCTGCAGGGGAGCGGGGCATGCCGGTTCCTTGGCTGGAGAAGGAGTCTCCTTGTGAGGTGGTAGAAGGAGCACTGACGGCCTTGAGCCCAGTTTCTGCCTTTGTCAAATGGGGATAATGACCCAGCCACACCCCTCCCAGGGTTGTTGTGAGGCTGGAAAGGTGGTTCCCAAGAGGGTGGTTCCCAGAATTGTTGATGAGACTGTTTCTCCTGCAGCTGTGTGGACCTGGATG	-			P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			4891	2754	0	0	ENST00000269571.5:c.1899-508_1916del		p.X633_splice	ENST00000269571		633																																																																															
BCL2L1	0	MSKCC	GRCh37	20	30309657	30309657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023516-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1578	206	776	0	ENST00000307677.4:c.365G>A	p.Ser122Asn	p.S122N	ENST00000307677	NM_138578.1	122	aGc/aAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0023517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	40	440	0	ENST00000269305.4:c.559+2T>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
RASA1	0	MSKCC	GRCh37	5	86672317	86672317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	36	450	0	ENST00000274376.6:c.2119C>T	p.Arg707Cys	p.R707C	ENST00000274376	NM_002890.2	707	Cgt/Tgt																																																																														
JAK1	0	MSKCC	GRCh37	1	65332709	65332710	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	41	552	0	ENST00000342505.4:c.829_830del	p.Leu277AspfsTer7	p.L277Dfs*7	ENST00000342505	NM_002227.2	277	TTg/g																																																																														
RAD52	0	MSKCC	GRCh37	12	1040397	1040397	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35008685		P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	45	558	0	ENST00000358495.3:c.175G>A	p.Gly59Arg	p.G59R	ENST00000358495	NM_134424.2	59	Gga/Aga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	25	675	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99491870	99491870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	46	609	0	ENST00000268035.6:c.3655G>A	p.Glu1219Lys	p.E1219K	ENST00000268035	NM_000875.3	1219	Gag/Aag																																																																														
FLCN	0	MSKCC	GRCh37	17	17119709	17119710	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	36	502	0	ENST00000285071.4:c.1284_1285del	p.His429ArgfsTer26	p.H429Rfs*26	ENST00000285071	NM_144997.5	428	ccCCac/ccac																																																																														
GNA11	0	MSKCC	GRCh37	19	3110332	3110332	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	50	662	1	ENST00000078429.4:c.321+1G>A		p.X107_splice	ENST00000078429	NM_002067.2	107																																																																															
DNMT1	0	MSKCC	GRCh37	19	10244345	10244345	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	63	675	0	ENST00000340748.4:c.4849T>C	p.Ter1617GlnextTer23	p.*1617Qext*23	ENST00000340748		1617	Tag/Cag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11144482	11144482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	53	730	0	ENST00000344626.4:c.3814G>A	p.Ala1272Thr	p.A1272T	ENST00000344626	NM_003072.3	1272	Gcc/Acc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216184	36216184	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	59	690	3	ENST00000222270.7:c.3596del	p.Gly1199AlafsTer156	p.G1199Afs*156	ENST00000222270	NM_014727.1	1198	Ggg/gg																																																																														
ERF	0	MSKCC	GRCh37	19	42753181	42753181	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	68	699	0	ENST00000222329.4:c.1083del	p.Ser362ProfsTer35	p.S362Pfs*35	ENST00000222329	NM_006494.2	361	ccC/cc																																																																														
XPO1	0	MSKCC	GRCh37	2	61753592	61753592	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	46	714	0	ENST00000401558.2:c.191A>G	p.Asp64Gly	p.D64G	ENST00000401558	NM_003400.3	64	gAc/gGc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134880956	134880956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	55	609	0	ENST00000398015.3:c.1519C>T	p.Arg507Cys	p.R507C	ENST00000398015	NM_004441.4	507	Cgt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	8	420	0	ENST00000263967.3:c.1034A>G	p.Asn345Ser	p.N345S	ENST00000263967	NM_006218.2	345	aAt/aGt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807328	1807328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	68	805	0	ENST00000260795.2:c.1577T>C	p.Met526Thr	p.M526T	ENST00000260795		526	aTg/aCg																																																																														
IL7R	0	MSKCC	GRCh37	5	35876586	35876586	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	40	475	0	ENST00000303115.3:c.1378T>C	p.Ter460ArgextTer7	p.*460Rext*7	ENST00000303115	NM_002185.3	460	Tga/Cga																																																																														
CSF1R	0	MSKCC	GRCh37	5	149459795	149459795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	59	709	1	ENST00000286301.3:c.412G>A	p.Val138Ile	p.V138I	ENST00000286301	NM_005211.3	138	Gtc/Atc																																																																														
FLT4	0	MSKCC	GRCh37	5	180051023	180051023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	57	803	0	ENST00000261937.6:c.1460G>A	p.Arg487His	p.R487H	ENST00000261937	NM_182925.4	487	cGt/cAt																																																																														
FLT4	0	MSKCC	GRCh37	5	180055919	180055919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	44	595	2	ENST00000261937.6:c.1066G>A	p.Val356Met	p.V356M	ENST00000261937	NM_182925.4	356	Gtg/Atg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911172	29911172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	34	350	0	ENST00000376809.5:c.471G>T	p.Trp157Cys	p.W157C	ENST00000376809	NM_002116.7	157	tgG/tgT																																																																														
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	40	585	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	42	518	1	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																																																														
KLF4	0	MSKCC	GRCh37	9	110250133	110250133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	46	639	1	ENST00000374672.4:c.542C>T	p.Pro181Leu	p.P181L	ENST00000374672	NM_004235.4	181	cCg/cTg																																																																														
ABL1	0	MSKCC	GRCh37	9	133738211	133738211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	41	576	0	ENST00000318560.5:c.611C>T	p.Thr204Met	p.T204M	ENST00000318560	NM_005157.4	204	aCg/aTg																																																																														
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	47	326	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324886	31324887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	28	301	0	ENST00000412585.2:c.49_50insG	p.Leu17ArgfsTer82	p.L17Rfs*82	ENST00000412585	NM_005514.6	17	ctg/cGtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	160	583	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724317	112724317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	189	592	0	ENST00000369452.4:c.201del	p.Val68LeufsTer23	p.V68Lfs*23	ENST00000369452	NM_007373.3	67	tcA/tc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94194137	94194137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	209	692	0	ENST00000323929.3:c.1291del	p.Asp431IlefsTer3	p.D431Ifs*3	ENST00000323929	NM_005591.3	431	Gat/at																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426763	121426763	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	215	730	0	ENST00000257555.6:c.454A>G	p.Thr152Ala	p.T152A	ENST00000257555		152	Act/Gct																																																																														
PTPRD	0	MSKCC	GRCh37	9	8389320	8389320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	39	750	0	ENST00000356435.5:c.4298C>T	p.Pro1433Leu	p.P1433L	ENST00000356435		1433	cCc/cTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	53	608	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178948160	178948160	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	20	225	0	ENST00000263967.3:c.2932G>C	p.Glu978Gln	p.E978Q	ENST00000263967	NM_006218.2	978	Gag/Cag																																																																														
SLX4	0	MSKCC	GRCh37	16	3647926	3647927	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCTTCCGCCTCTTCCGTGGCT			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	53	814	0	ENST00000294008.3:c.1217_1237dup	p.Glu406_Lys412dup	p.E406_K412dup	ENST00000294008	NM_032444.2	406	gtg/gAGCCACGGAAGAGGCGGAAGGtg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858024	9858024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	43	593	0	ENST00000330684.3:c.3377C>T	p.Pro1126Leu	p.P1126L	ENST00000330684	NM_001134407.1	1126	cCt/cTt																																																																														
JAK3	0	MSKCC	GRCh37	19	17942080	17942080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	46	694	0	ENST00000458235.1:c.2935G>C	p.Asp979His	p.D979H	ENST00000458235	NM_000215.3	979	Gac/Cac																																																																														
ATR	0	MSKCC	GRCh37	3	142185188	142185188	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	62	496	0	ENST00000350721.4:c.6875A>G	p.Tyr2292Cys	p.Y2292C	ENST00000350721	NM_001184.3	2292	tAt/tGt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170312	32170312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	66	832	0	ENST00000375023.3:c.3296G>T	p.Gly1099Val	p.G1099V	ENST00000375023	NM_004557.3	1099	gGa/gTa																																																																														
SMO	0	MSKCC	GRCh37	7	128845618	128845618	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	16	354	0	ENST00000249373.3:c.915del	p.Glu305AspfsTer21	p.E305Dfs*21	ENST00000249373	NM_005631.4	305	gaG/ga																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209256	98209256	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	66	703	0	ENST00000331920.6:c.4282del	p.Glu1428LysfsTer24	p.E1428Kfs*24	ENST00000331920	NM_000264.3	1428	Gaa/aa																																																																														
ATRX	0	MSKCC	GRCh37	X	76939615	76939615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	62	620	0	ENST00000373344.5:c.1133C>A	p.Thr378Lys	p.T378K	ENST00000373344	NM_000489.3	378	aCa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	259	659	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579348	7579348	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	303	666	0	ENST00000269305.4:c.339del	p.Leu114CysfsTer9	p.L114Cfs*9	ENST00000269305	NM_001126112.2	113	ttC/tt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346154	89346154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	77	236	1	ENST00000301030.4:c.6796G>A	p.Ala2266Thr	p.A2266T	ENST00000301030	NM_001256183.1	2266	Gcg/Acg																																																																														
RB1	0	MSKCC	GRCh37	13	48954200	48954201	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	313	416	0	ENST00000267163.4:c.1403dup	p.Leu468PhefsTer7	p.L468Ffs*7	ENST00000267163	NM_000321.2	467	-/T																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950442	38950442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	207	461	0	ENST00000357387.3:c.3508G>A	p.Glu1170Lys	p.E1170K	ENST00000357387	NM_152756.3	1170	Gaa/Aaa																																																																														
PTCH1	0	MSKCC	GRCh37	9	98211449	98211449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	214	577	0	ENST00000331920.6:c.3706G>A	p.Glu1236Lys	p.E1236K	ENST00000331920	NM_000264.3	1236	Gag/Aag																																																																														
CSF1R	0	MSKCC	GRCh37	5	149433706	149433706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	238	659	2	ENST00000286301.3:c.2845G>A	p.Glu949Lys	p.E949K	ENST00000286301	NM_005211.3	949	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	524	738	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt																																																																														
EP300	0	MSKCC	GRCh37	22	41569644	41569644	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	72	246	0	ENST00000263253.7:c.4635C>G	p.Ser1545Arg	p.S1545R	ENST00000263253	NM_001429.3	1545	agC/agG																																																																														
EP300	0	MSKCC	GRCh37	22	41574577	41574577	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023547-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	283	829	0	ENST00000263253.7:c.6862C>G	p.Gln2288Glu	p.Q2288E	ENST00000263253	NM_001429.3	2288	Cag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0023613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	219	440	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	351	836	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36938141	36938141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	468	922	1	ENST00000361632.4:c.820C>T	p.Arg274Cys	p.R274C	ENST00000361632		274	Cgt/Tgt																																																																														
PTEN	0	MSKCC	GRCh37	10	89725086	89725086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	18	196	0	ENST00000371953.3:c.1069C>T	p.Pro357Ser	p.P357S	ENST00000371953	NM_000314.4	357	Cca/Tca																																																																														
BRCA2	0	MSKCC	GRCh37	13	32950854	32950854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	227	727	0	ENST00000380152.3:c.8680C>G	p.Gln2894Glu	p.Q2894E	ENST00000380152		2894	Caa/Gaa																																																																														
BRD4	0	MSKCC	GRCh37	19	15350600	15350626	+	protein_altering_variant	In_Frame_Del	DEL	CTGGGGCTGGACCACGGAGGCAGCACG	CTGGGGCTGGACCACGGAGGCAGCACG	ATGGCA			P-0023613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	64	1010	5	ENST00000263377.2:c.3289_3315delinsTGCCAT	p.Arg1097_Gln1105delinsCysHis	p.R1097_Q1105delinsCH	ENST00000263377	NM_058243.2	1097	CGTGCTGCCTCCGTGGTCCAGCCCCAG/TGCCAT																																																																														
FAT1	0	MSKCC	GRCh37	4	187557280	187557280	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	19	707	0	ENST00000441802.2:c.4082C>A	p.Ser1361Ter	p.S1361*	ENST00000441802	NM_005245.3	1361	tCa/tAa																																																																														
RBM10	0	MSKCC	GRCh37	X	47028893	47028893	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	47	626	0	ENST00000329236.7:c.197C>G	p.Ala66Gly	p.A66G	ENST00000329236	NM_001204466.1	66	gCg/gGg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	118	632	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	118	632	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	118	632	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	174	669	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TBX3	0	MSKCC	GRCh37	12	115115435	115115437	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0023619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	205	858	0	ENST00000257566.3:c.889_891del	p.Asn297del	p.N297del	ENST00000257566	NM_016569.3	297	AAC/-																																																																														
HNF1A	0	MSKCC	GRCh37	12	121431404	121431404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	127	809	0	ENST00000257555.6:c.608G>A	p.Arg203His	p.R203H	ENST00000257555		203	cGt/cAt																																																																														
EP300	0	MSKCC	GRCh37	22	41574406	41574406	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	159	663	0	ENST00000263253.7:c.6691A>G	p.Met2231Val	p.M2231V	ENST00000263253	NM_001429.3	2231	Atg/Gtg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177996	56177996	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	133	562	0	ENST00000399503.3:c.2972del	p.Pro991HisfsTer91	p.P991Hfs*91	ENST00000399503	NM_005921.1	990	aCc/ac																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	84	780	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912763	32912763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	17	473	1	ENST00000380152.3:c.4271C>T	p.Ser1424Phe	p.S1424F	ENST00000380152		1424	tCt/tTt																																																																														
JAK3	0	MSKCC	GRCh37	19	17942190	17942190	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	46	586	0	ENST00000458235.1:c.2825C>G	p.Ser942Cys	p.S942C	ENST00000458235	NM_000215.3	942	tCc/tGc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160570	56160570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			27	13	342	0	ENST00000399503.3:c.844G>A	p.Gly282Ser	p.G282S	ENST00000399503	NM_005921.1	282	Ggc/Agc																																																																														
NBN	0	MSKCC	GRCh37	8	90970983	90970983	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	15	508	0	ENST00000265433.3:c.1094C>G	p.Ala365Gly	p.A365G	ENST00000265433	NM_002485.4	365	gCt/gGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0023621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	177	792	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
STAT3	0	MSKCC	GRCh37	17	40489543	40489543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	174	777	0	ENST00000264657.5:c.707C>G	p.Thr236Arg	p.T236R	ENST00000264657	NM_139276.2	236	aCg/aGg																																																																														
FLT1	0	MSKCC	GRCh37	13	28901656	28901656	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	119	578	0	ENST00000282397.4:c.2739A>C	p.Lys913Asn	p.K913N	ENST00000282397	NM_002019.4	913	aaA/aaC																																																																														
STAT3	0	MSKCC	GRCh37	17	40489529	40489529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	170	770	0	ENST00000264657.5:c.721del	p.Ala241LeufsTer20	p.A241Lfs*20	ENST00000264657	NM_139276.2	241	Gct/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	126	822	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778353	3778353	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	52	743	0	ENST00000262367.5:c.6695A>T	p.Gln2232Leu	p.Q2232L	ENST00000262367	NM_004380.2	2232	cAg/cTg																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243863	41243863	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	96	746	0	ENST00000357654.3:c.3685T>A	p.Leu1229Met	p.L1229M	ENST00000357654	NM_007294.3	1229	Ttg/Atg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944615	40944615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	31	482	0	ENST00000373198.4:c.1887G>T	p.Lys629Asn	p.K629N	ENST00000373198	NM_133170.3	629	aaG/aaT																																																																														
MSH3	0	MSKCC	GRCh37	5	80169088	80169088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	35	520	0	ENST00000265081.6:c.3284G>T	p.Gly1095Val	p.G1095V	ENST00000265081	NM_002439.4	1095	gGa/gTa																																																																														
RASA1	0	MSKCC	GRCh37	5	86685340	86685340	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	11	172	0	ENST00000274376.6:c.3056A>T	p.Gln1019Leu	p.Q1019L	ENST00000274376	NM_002890.2	1019	cAg/cTg																																																																														
RBM10	0	MSKCC	GRCh37	X	47028840	47028840	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	69	501	0	ENST00000329236.7:c.144T>A	p.Tyr48Ter	p.Y48*	ENST00000329236	NM_001204466.1	48	taT/taA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	188	731	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	240	803	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
INHBA	0	MSKCC	GRCh37	7	41729271	41729271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	136	503	1	ENST00000242208.4:c.1258G>A	p.Val420Met	p.V420M	ENST00000242208	NM_002192.2	420	Gtg/Atg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99440126	99440126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	239	512	1	ENST00000268035.6:c.1094G>T	p.Arg365Leu	p.R365L	ENST00000268035	NM_000875.3	365	cGa/cTa																																																																														
WT1	0	MSKCC	GRCh37	11	32439146	32439146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	214	838	1	ENST00000332351.3:c.927G>A	p.Met309Ile	p.M309I	ENST00000332351	NM_024426.4	309	atG/atA																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15295774	15295774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	424	1073	1	ENST00000263388.2:c.2353C>T	p.Arg785Cys	p.R785C	ENST00000263388	NM_000435.2	785	Cgc/Tgc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266064	41266656	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	GCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGT	GCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGT	-			P-0023623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	124	461	0	ENST00000349496.5:c.63_455del		p.X21_splice	ENST00000349496	NM_001904.3	21	GCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGT/-																																																																														
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	87	668	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	107	943	1	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31495463	31495463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	237	680	1	ENST00000344624.3:c.1685G>A	p.Arg562His	p.R562H	ENST00000344624		562	cGt/cAt																																																																														
BTK	0	MSKCC	GRCh37	X	100611875	100611875	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023624-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	110	997	0	ENST00000308731.7:c.1246G>T	p.Val416Leu	p.V416L	ENST00000308731	NM_000061.2	416	Gtg/Ttg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0007175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	345	895	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
INPP4A	0	MSKCC	GRCh37	2	99204054	99204054	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76257041		P-0007175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			269	89	477	1	ENST00000074304.5:c.2917G>A	p.Gly973Arg	p.G973R	ENST00000074304	NM_001134224.1	973	Gga/Aga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573556	48573556	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			82	89	453	0	ENST00000342988.3:c.140T>A	p.Leu47Gln	p.L47Q	ENST00000342988	NM_005359.5	47	cTg/cAg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288868	15288868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	54	388	0	ENST00000263388.2:c.3871C>T	p.Arg1291Cys	p.R1291C	ENST00000263388	NM_000435.2	1291	Cgc/Tgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444975	49444975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			320	113	770	0	ENST00000301067.7:c.2491T>C	p.Ser831Pro	p.S831P	ENST00000301067	NM_003482.3	831	Tca/Cca																																																																														
APC	0	MSKCC	GRCh37	5	112174760	112174760	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007175-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			273	65	418	0	ENST00000257430.4:c.3469G>T	p.Glu1157Ter	p.E1157*	ENST00000257430	NM_000038.5	1157	Gag/Tag																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			905	126	814	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																														
SETD2	0	MSKCC	GRCh37	3	47144907	47144907	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			634	59	530	0	ENST00000409792.3:c.4846G>C	p.Asp1616His	p.D1616H	ENST00000409792	NM_014159.6	1616	Gat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			763	77	813	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																														
SPEN	0	MSKCC	GRCh37	1	16258428	16258428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			776	69	651	1	ENST00000375759.3:c.5693G>A	p.Arg1898Gln	p.R1898Q	ENST00000375759	NM_015001.2	1898	cGa/cAa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118307472	118307472	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	42	436	0	ENST00000534358.1:c.245C>G	p.Ser82Ter	p.S82*	ENST00000534358	NM_005933.3	82	tCa/tGa																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134231	41134231	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			533	35	451	0	ENST00000379561.5:c.1397T>G	p.Leu466Arg	p.L466R	ENST00000379561	NM_002015.3	466	cTg/cGg																																																																														
NTHL1	0	MSKCC	GRCh37	16	2093599	2093599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			934	113	804	0	ENST00000219066.1:c.678G>T	p.Met226Ile	p.M226I	ENST00000219066	NM_002528.5	226	atG/atT																																																																														
CDH1	0	MSKCC	GRCh37	16	68772254	68772254	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			779	88	719	1	ENST00000261769.5:c.103G>T	p.Glu35Ter	p.E35*	ENST00000261769	NM_004360.3	35	Gag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	40748605	40748605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			530	51	522	0	ENST00000373198.4:c.2911C>T	p.His971Tyr	p.H971Y	ENST00000373198	NM_133170.3	971	Cat/Tat																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55141054	55141054	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009935-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			543	42	442	0	ENST00000257290.5:c.1700C>G	p.Pro567Arg	p.P567R	ENST00000257290	NM_006206.4	567	cCa/cGa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0010276-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			687	255	661	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	310	730	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	31	558	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	0	MSKCC	GRCh37	1	27107180	27107180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	136	712	0	ENST00000324856.7:c.6791C>T	p.Ser2264Leu	p.S2264L	ENST00000324856	NM_006015.4	2264	tCa/tTa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101195	27101195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	141	762	1	ENST00000324856.7:c.4477C>T	p.Gln1493Ter	p.Q1493*	ENST00000324856	NM_006015.4	1493	Cag/Tag																																																																														
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	49	659	2	ENST00000356142.4:c.85C>A	p.Pro29Thr	p.P29T	ENST00000356142	NM_018890.3	29	Cct/Act																																																																														
CREBBP	0	MSKCC	GRCh37	16	3828180	3828180	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	46	323	2	ENST00000262367.5:c.1945G>T	p.Glu649Ter	p.E649*	ENST00000262367	NM_004380.2	649	Gaa/Taa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434235	49434235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	100	1067	0	ENST00000301067.7:c.7318G>A	p.Val2440Ile	p.V2440I	ENST00000301067	NM_003482.3	2440	Gtt/Att																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101360	27101360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	161	675	0	ENST00000324856.7:c.4642C>T	p.His1548Tyr	p.H1548Y	ENST00000324856	NM_006015.4	1548	Cat/Tat																																																																														
ELF3	0	MSKCC	GRCh37	1	201981809	201981809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	58	748	1	ENST00000359651.3:c.520C>T	p.Gln174Ter	p.Q174*	ENST00000359651		174	Cag/Tag																																																																														
ELF3	0	MSKCC	GRCh37	1	201983105	201983105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	67	751	0	ENST00000359651.3:c.954G>C	p.Lys318Asn	p.K318N	ENST00000359651		318	aaG/aaC																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274824	123274824	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	256	570	0	ENST00000358487.5:c.1094G>C	p.Arg365Thr	p.R365T	ENST00000358487	NM_000141.4	365	aGa/aCa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118350916	118350916	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	100	668	0	ENST00000534358.1:c.3597G>C	p.Trp1199Cys	p.W1199C	ENST00000534358	NM_005933.3	1199	tgG/tgC																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373813	118373814	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	59	386	0	ENST00000534358.1:c.7210dup	p.Thr2404AsnfsTer21	p.T2404Nfs*21	ENST00000534358	NM_005933.3	2402	-/A																																																																														
IGF1	0	MSKCC	GRCh37	12	102869472	102869472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	139	568	0	ENST00000307046.8:c.169G>A	p.Glu57Lys	p.E57K	ENST00000307046	NM_001111285.1	57	Gag/Aag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061334	38061334	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	79	774	0	ENST00000250448.2:c.655del	p.Arg219AlafsTer102	p.R219Afs*102	ENST00000250448	NM_004496.3	219	Cgc/gc																																																																														
TSC2	0	MSKCC	GRCh37	16	2124285	2124285	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	70	829	0	ENST00000219476.3:c.2440G>C	p.Glu814Gln	p.E814Q	ENST00000219476	NM_000548.3	814	Gag/Cag																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804406	46804406	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	35	481	0	ENST00000290295.7:c.602-1G>C		p.X201_splice	ENST00000290295	NM_006361.5	201																																																																															
ASXL1	0	MSKCC	GRCh37	20	31017232	31017232	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	81	385	0	ENST00000375687.4:c.563C>G	p.Ser188Ter	p.S188*	ENST00000375687	NM_015338.5	188	tCa/tGa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022987	31022987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	143	667	0	ENST00000375687.4:c.2472G>C	p.Glu824Asp	p.E824D	ENST00000375687	NM_015338.5	824	gaG/gaC																																																																														
TOP1	0	MSKCC	GRCh37	20	39713173	39713173	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023450-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	106	438	0	ENST00000361337.2:c.579G>C	p.Lys193Asn	p.K193N	ENST00000361337	NM_003286.2	193	aaG/aaC																																																																														
PTEN	0	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	190	577	0	ENST00000371953.3:c.274G>C	p.Asp92His	p.D92H	ENST00000371953	NM_000314.4	92	Gac/Cac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	249	796	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																																																														
PBRM1	0	MSKCC	GRCh37	3	52651336	52651336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	48	896	1	ENST00000394830.3:c.1760T>C	p.Ile587Thr	p.I587T	ENST00000394830	NM_018313.4	587	aTa/aCa																																																																														
FAM58A	0	MSKCC	GRCh37	X	152860097	152860097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201043377		P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	341	457	0	ENST00000406277.2:c.331C>T	p.Arg111Cys	p.R111C	ENST00000406277	NM_152274.4	111	Cgc/Tgc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78432432	78432432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	95	599	0	ENST00000370768.2:c.419G>T	p.Ser140Ile	p.S140I	ENST00000370768	NM_003902.3	140	aGt/aTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89725095	89725095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	54	171	0	ENST00000371953.3:c.1078A>T	p.Ser360Cys	p.S360C	ENST00000371953	NM_000314.4	360	Agc/Tgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49441836	49441836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	152	762	0	ENST00000301067.7:c.4148G>A	p.Cys1383Tyr	p.C1383Y	ENST00000301067	NM_003482.3	1383	tGt/tAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443512	49443512	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	68	732	0	ENST00000301067.7:c.3859G>T	p.Glu1287Ter	p.E1287*	ENST00000301067	NM_003482.3	1287	Gag/Tag																																																																														
POLE	0	MSKCC	GRCh37	12	133237701	133237701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	85	881	0	ENST00000320574.5:c.2914G>A	p.Glu972Lys	p.E972K	ENST00000320574	NM_006231.2	972	Gag/Aag																																																																														
DIS3	0	MSKCC	GRCh37	13	73345073	73345073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	83	669	0	ENST00000377767.4:c.1724C>T	p.Thr575Met	p.T575M	ENST00000377767	NM_014953.3	575	aCg/aTg																																																																														
DICER1	0	MSKCC	GRCh37	14	95562749	95562749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	79	595	0	ENST00000343455.3:c.4508A>G	p.Tyr1503Cys	p.Y1503C	ENST00000343455	NM_177438.2	1503	tAc/tGc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943765	9943765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	207	670	0	ENST00000330684.3:c.1176G>T	p.Arg392Ser	p.R392S	ENST00000330684	NM_001134407.1	392	agG/agT																																																																														
CCNE1	0	MSKCC	GRCh37	19	30308401	30308401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1244	275	916	0	ENST00000262643.3:c.415C>G	p.Leu139Val	p.L139V	ENST00000262643	NM_001238.2	139	Ctt/Gtt																																																																														
MYCN	0	MSKCC	GRCh37	2	16082895	16082895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	36	308	0	ENST00000281043.3:c.709C>A	p.Pro237Thr	p.P237T	ENST00000281043	NM_005378.4	237	Ccg/Acg																																																																														
XPO1	0	MSKCC	GRCh37	2	61719573	61719575	+	inframe_deletion	In_Frame_Del	DEL	TTA	TTA	-			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	94	872	0	ENST00000401558.2:c.1608_1610del	p.Asn536del	p.N536del	ENST00000401558	NM_003400.3	536	aaTAAa/aaa																																																																														
INPP4A	0	MSKCC	GRCh37	2	99160436	99160436	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	75	749	0	ENST00000074304.5:c.915C>G	p.Tyr305Ter	p.Y305*	ENST00000074304	NM_001134224.1	305	taC/taG																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138461552	138461552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	177	792	1	ENST00000289153.2:c.469G>A	p.Glu157Lys	p.E157K	ENST00000289153	NM_006219.2	157	Gag/Aag																																																																														
WWTR1	0	MSKCC	GRCh37	3	149374921	149374921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	315	917	4	ENST00000360632.3:c.173C>T	p.Ser58Leu	p.S58L	ENST00000360632	NM_015472.4	58	tCg/tTg																																																																														
KDR	0	MSKCC	GRCh37	4	55958804	55958804	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	61	884	0	ENST00000263923.4:c.3049G>T	p.Glu1017Ter	p.E1017*	ENST00000263923	NM_002253.2	1017	Gag/Tag																																																																														
TERT	0	MSKCC	GRCh37	5	1295245	1295245	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	46	667	0				ENST00000310581	NM_198253.2																																																																																
CARD11	0	MSKCC	GRCh37	7	2949746	2949746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	90	986	0	ENST00000396946.4:c.3198G>C	p.Lys1066Asn	p.K1066N	ENST00000396946	NM_032415.4	1066	aaG/aaC																																																																														
EGFR	0	MSKCC	GRCh37	7	55266446	55266446	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	68	778	0	ENST00000275493.2:c.2738A>T	p.Lys913Met	p.K913M	ENST00000275493	NM_005228.3	913	aAg/aTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151900061	151900061	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	99	848	0	ENST00000262189.6:c.4050A>C	p.Lys1350Asn	p.K1350N	ENST00000262189	NM_170606.2	1350	aaA/aaC																																																																														
FGF19	0	MSKCC	GRCh37	11	69518531	69518531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	164	748	2	ENST00000294312.3:c.114G>T	p.Trp38Cys	p.W38C	ENST00000294312	NM_005117.2	38	tgG/tgT																																																																														
MDM2	0	MSKCC	GRCh37	12	69233062	69233062	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	109	417	0	ENST00000462284.1:c.927G>A	p.Trp309Ter	p.W309*	ENST00000462284	NM_002392.5	309	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	323	648	0	ENST00000269305.4:c.559+2T>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
HIST1H3A	0	MSKCC	GRCh37	6	26021044	26021044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	143	638	1	ENST00000357647.3:c.327C>A	p.Asn109Lys	p.N109K	ENST00000357647	NM_003529.2	109	aaC/aaA																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032057	26032057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	147	500	1	ENST00000244661.2:c.232G>A	p.Asp78Asn	p.D78N	ENST00000244661	NM_003537.3	78	Gac/Aac																																																																														
DAXX	0	MSKCC	GRCh37	6	33288345	33288345	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	77	583	0	ENST00000374542.5:c.1063C>G	p.Pro355Ala	p.P355A	ENST00000374542	NM_001141970.1	355	Cct/Gct																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651925	36651925	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	174	754	0	ENST00000244741.5:c.47A>T	p.Lys16Met	p.K16M	ENST00000244741	NM_000389.4	16	aAg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0023455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	115	976	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	94	993	1	ENST00000269305.4:c.503A>T	p.His168Leu	p.H168L	ENST00000269305	NM_001126112.2	168	cAc/cTc																																																																														
TP63	0	MSKCC	GRCh37	3	189526145	189526145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	214	877	1	ENST00000264731.3:c.409G>A	p.Asp137Asn	p.D137N	ENST00000264731	NM_003722.4	137	Gac/Aac																																																																														
FAT1	0	MSKCC	GRCh37	4	187519237	187519237	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	271	895	0	ENST00000441802.2:c.12146G>C	p.Cys4049Ser	p.C4049S	ENST00000441802	NM_005245.3	4049	tGt/tCt																																																																														
MED12	0	MSKCC	GRCh37	X	70346960	70346960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	179	716	0	ENST00000374080.3:c.2827C>A	p.Gln943Lys	p.Q943K	ENST00000374080		943	Cag/Aag																																																																														
RB1	0	MSKCC	GRCh37	13	48936955	48936955	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	666	510	0	ENST00000267163.4:c.723del	p.Ala242LeufsTer22	p.A242Lfs*22	ENST00000267163	NM_000321.2	241	acA/ac																																																																														
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0023457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	662	882	0	ENST00000269305.4:c.919+1del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
SMAD2	0	MSKCC	GRCh37	18	45395765	45395765	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	235	586	0	ENST00000262160.6:c.369G>C	p.Leu123Phe	p.L123F	ENST00000262160	NM_005901.5	123	ttG/ttC																																																																														
SDHA	0	MSKCC	GRCh37	5	233625	233625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	123	450	0	ENST00000264932.6:c.929G>T	p.Gly310Val	p.G310V	ENST00000264932	NM_004168.2	310	gGa/gTa																																																																														
NSD1	0	MSKCC	GRCh37	5	176637112	176637112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	281	814	0	ENST00000439151.2:c.1712C>G	p.Ser571Cys	p.S571C	ENST00000439151	NM_022455.4	571	tCt/tGt																																																																														
PREX2	0	MSKCC	GRCh37	8	69046488	69046488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	197	872	1	ENST00000288368.4:c.3961C>T	p.Gln1321Ter	p.Q1321*	ENST00000288368	NM_024870.2	1321	Cag/Tag																																																																														
NTRK2	0	MSKCC	GRCh37	9	87636218	87636218	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	486	711	0	ENST00000277120.3:c.2383C>G	p.Pro795Ala	p.P795A	ENST00000277120		795	Ccc/Gcc																																																																														
BCOR	0	MSKCC	GRCh37	X	39933070	39933071	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	316	1139	0	ENST00000378444.4:c.1528dup	p.Val510GlyfsTer8	p.V510Gfs*8	ENST00000378444	NM_001123385.1	510	gtg/gGtg																																																																														
PARP1	0	MSKCC	GRCh37	1	226568887	226568887	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	49	464	0	ENST00000366794.5:c.1182G>C	p.Lys394Asn	p.K394N	ENST00000366794	NM_001618.3	394	aaG/aaC																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727510	66727510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	25	518	0	ENST00000307102.5:c.226G>T	p.Ala76Ser	p.A76S	ENST00000307102	NM_002755.3	76	Gct/Tct																																																																														
MET	0	MSKCC	GRCh37	7	116411872	116411900	+	splice_region_variant,intron_variant	Splice_Region	DEL	TAACAAGCTCTTTCTTTCTCTCTGTTTTA	TAACAAGCTCTTTCTTTCTCTCTGTTTTA	-			P-0023504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	237	989	1	ENST00000397752.3:c.2888-31_2888-3del		p.X963_splice	ENST00000397752	NM_000245.2	963																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	658	423	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	410	618	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
APC	0	MSKCC	GRCh37	5	112170676	112170676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	114	449	0	ENST00000257430.4:c.1772C>A	p.Ala591Asp	p.A591D	ENST00000257430	NM_000038.5	591	gCc/gAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0023507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	519	343	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108150289	108150314	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTTGAAAATGCATACTTGAAAGCT	CTTTTGAAAATGCATACTTGAAAGCT	-			P-0023507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	26	360	0	ENST00000278616.4:c.3357_3382del	p.Phe1120GlyfsTer9	p.F1120Gfs*9	ENST00000278616	NM_000051.3	1119	gCTTTTGAAAATGCATACTTGAAAGCT/g																																																																														
GLI1	0	MSKCC	GRCh37	12	57864270	57864270	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	403	395	0	ENST00000228682.2:c.1747C>G	p.Pro583Ala	p.P583A	ENST00000228682	NM_005269.2	583	Cct/Gct																																																																														
TSHR	0	MSKCC	GRCh37	14	81558901	81558901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	210	425	0	ENST00000298171.2:c.494C>G	p.Thr165Arg	p.T165R	ENST00000298171	NM_000369.2	165	aCg/aGg																																																																														
STAT5B	0	MSKCC	GRCh37	17	40376849	40376849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	567	544	0	ENST00000293328.3:c.323G>T	p.Cys108Phe	p.C108F	ENST00000293328	NM_012448.3	108	tGc/tTc																																																																														
BCOR	0	MSKCC	GRCh37	X	39922307	39922307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	133	208	0	ENST00000378444.4:c.3865G>T	p.Gly1289Cys	p.G1289C	ENST00000378444	NM_001123385.1	1289	Ggc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	60	618	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PTEN	0	MSKCC	GRCh37	10	89692886	89692886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	128	394	0	ENST00000371953.3:c.370T>A	p.Cys124Ser	p.C124S	ENST00000371953	NM_000314.4	124	Tgt/Agt																																																																														
MDM4	0	MSKCC	GRCh37	1	204511945	204511945	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	53	423	0	ENST00000367182.3:c.545A>G	p.Glu182Gly	p.E182G	ENST00000367182	NM_001278516.1	182	gAa/gGa																																																																														
TBX3	0	MSKCC	GRCh37	12	115109836	115109845	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCTGGCGG	GGGCTGGCGG	-			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	176	750	0	ENST00000257566.3:c.2033_2042del	p.Ala678GlyfsTer208	p.A678Gfs*208	ENST00000257566	NM_016569.3	678	gCCGCCAGCCCg/gg																																																																														
CDH1	0	MSKCC	GRCh37	16	68842391	68842400	+	frameshift_variant	Frame_Shift_Del	DEL	GACAGAAGAG	GACAGAAGAG	-			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	209	673	0	ENST00000261769.5:c.452_461del	p.Arg151LysfsTer61	p.R151Kfs*61	ENST00000261769	NM_004360.3	151	aGACAGAAGAGa/aa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178919199	178919199	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	102	342	0	ENST00000263967.3:c.684A>C	p.Lys228Asn	p.K228N	ENST00000263967	NM_006218.2	228	aaA/aaC																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161805	56161805	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	64	431	0	ENST00000399503.3:c.1301+1G>T		p.X434_splice	ENST00000399503	NM_005921.1	434																																																																															
MAP3K1	0	MSKCC	GRCh37	5	56177009	56177010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0023508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	108	539	0	ENST00000399503.3:c.2282_2283dup	p.Asp762Ter	p.D762*	ENST00000399503	NM_005921.1	760	ctt/ctTAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	111	725	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
BRAF	0	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	109	598	0	ENST00000288602.6:c.1781A>C	p.Asp594Ala	p.D594A	ENST00000288602	NM_004333.4	594	gAt/gCt																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	82	384	1	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	81	488	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																																																														
APC	0	MSKCC	GRCh37	5	112137024	112137024	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	90	560	0	ENST00000257430.4:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000257430	NM_000038.5	260	Cag/Tag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120464961	120464961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	153	771	0	ENST00000256646.2:c.5111G>A	p.Arg1704His	p.R1704H	ENST00000256646	NM_024408.3	1704	cGt/cAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106335	27106359	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTGTGTCCAATACCATTCGAAGC	CTGTGTGTCCAATACCATTCGAAGC	-			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	151	741	0	ENST00000324856.7:c.5950_5974del	p.Val1984HisfsTer23	p.V1984Hfs*23	ENST00000324856	NM_006015.4	1982	gtCTGTGTGTCCAATACCATTCGAAGC/gt																																																																														
ATM	0	MSKCC	GRCh37	11	108115722	108115722	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	48	380	0	ENST00000278616.4:c.870T>G	p.His290Gln	p.H290Q	ENST00000278616	NM_000051.3	290	caT/caG																																																																														
MGA	0	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	142	680	3	ENST00000219905.7:c.7306C>T	p.Arg2436Cys	p.R2436C	ENST00000219905	NM_001164273.1	2436	Cgt/Tgt																																																																														
MITF	0	MSKCC	GRCh37	3	70014170	70014170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	164	841	0	ENST00000352241.4:c.1334C>T	p.Thr445Met	p.T445M	ENST00000352241	NM_198159.2	445	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	290	689	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																																																														
PTEN	0	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0023386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	58	427	0	ENST00000371953.3:c.635-1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
MAX	0	MSKCC	GRCh37	14	65544756	65544756	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0023386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	201	545	2	ENST00000358664.4:c.172-2A>T		p.X58_splice	ENST00000358664	NM_002382.4	58																																																																															
TSC2	0	MSKCC	GRCh37	16	2110807	2110847	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCTCCAGGTGGGGTGGGGGCAGGAGCTCCGGGGAGCACCG	AGCTCCAGGTGGGGTGGGGGCAGGAGCTCCGGGGAGCACCG	-			P-0023386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	51	681	0	ENST00000219476.3:c.1112_1119+33del		p.X371_splice	ENST00000219476	NM_000548.3	371																																																																															
BCL2	0	MSKCC	GRCh37	18	60985553	60985553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	130	433	0	ENST00000333681.4:c.347C>T	p.Ser116Phe	p.S116F	ENST00000333681		116	tCc/tTc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11096901	11096901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	45	885	0	ENST00000344626.4:c.392C>G	p.Ser131Cys	p.S131C	ENST00000344626	NM_003072.3	131	tCt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	41	460	0				ENST00000310581	NM_198253.2																																																																																
KDM6A	0	MSKCC	GRCh37	X	44896902	44896902	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0023403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	68	308	1	ENST00000377967.4:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000377967	NM_021140.2	208	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0023403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	42	463	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																																																															
TP53	0	MSKCC	GRCh37	17	7579575	7579575	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	226	863	0	ENST00000269305.4:c.112delC	p.Gln38LysfsTer6	p.Q38Kfs*6	ENST00000269305	NM_001126112.2	38	Caa/aa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056320	27056321	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	156	507	0	ENST00000324856.7:c.1318_1319del	p.Ser440CysfsTer182	p.S440Cfs*182	ENST00000324856	NM_006015.4	439	cAG/c																																																																														
BAP1	0	MSKCC	GRCh37	3	52440351	52440351	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	219	811	0	ENST00000460680.1:c.701del	p.Val234GlyfsTer15	p.V234Gfs*15	ENST00000460680	NM_004656.3	234	gTg/gg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390662	139390675	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAAGGGGTGCTC	AGGAAGGGGTGCTC	-			P-0023427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	301	1106	0	ENST00000277541.6:c.7516_7529del	p.Glu2506HisfsTer5	p.E2506Hfs*5	ENST00000277541	NM_017617.3	2506	GAGCACCCCTTCCTc/c																																																																														
KDM6A	0	MSKCC	GRCh37	X	44820568	44820568	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	214	1007	3	ENST00000377967.4:c.265G>T	p.Gly89Ter	p.G89*	ENST00000377967	NM_021140.2	89	Gga/Tga																																																																														
SDHA	0	MSKCC	GRCh37	5	236676	236676	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	199	574	0	ENST00000264932.6:c.1394G>C	p.Arg465Pro	p.R465P	ENST00000264932	NM_004168.2	465	cGg/cCg																																																																														
CSF1R	0	MSKCC	GRCh37	5	149452934	149452999	+	inframe_deletion	In_Frame_Del	DEL	AGGTCCAGTTAAAACCTTGCAGGCCTGGGTAGGCCTCCACCATGACTTTGAGGTTGAGCCCCTCCC	AGGTCCAGTTAAAACCTTGCAGGCCTGGGTAGGCCTCCACCATGACTTTGAGGTTGAGCCCCTCCC	-			P-0023459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	438	1028	0	ENST00000286301.3:c.947_1012del	p.Gly316_Tyr338delinsAsp	p.G316_Y338delinsD	ENST00000286301	NM_005211.3	316	gGGGAGGGGCTCAACCTCAAAGTCATGGTGGAGGCCTACCCAGGCCTGCAAGGTTTTAACTGGACCTac/gac																																																																														
PTEN	0	MSKCC	GRCh37	10	89725053	89725058	+	inframe_deletion	In_Frame_Del	DEL	TACTTC	TACTTC	-			P-0023465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	37	360	0	ENST00000371953.3:c.1036_1041del	p.Tyr346_Phe347del	p.Y346_F347del	ENST00000371953	NM_000314.4	346	TACTTC/-																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	26	944	4	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	41	799	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	348	789	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11999013	11999013	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0009122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			106	184	346	0	ENST00000353533.5:c.513+2T>C		p.X171_splice	ENST00000353533	NM_003010.3	171																																																																															
ATR	0	MSKCC	GRCh37	3	142172040	142172040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	436	743	0	ENST00000350721.4:c.7691A>G	p.Glu2564Gly	p.E2564G	ENST00000350721	NM_001184.3	2564	gAa/gGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0009122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			153	313	660	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
HGF	0	MSKCC	GRCh37	7	81346580	81346598	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGGATTTCCCGTGTAGC	AGTGGATTTCCCGTGTAGC	-			P-0009122-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			497	99	504	0	ENST00000222390.5:c.1355_1373del	p.Cys452SerfsTer20	p.C452Sfs*20	ENST00000222390	NM_000601.4	452	tGCTACACGGGAAATCCACTc/tc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015921-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			2178	256	513	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0015921-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			593	1144	430	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
ATR	0	MSKCC	GRCh37	3	142183989	142183989	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015921-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			669	155	441	0	ENST00000350721.4:c.6991G>T	p.Asp2331Tyr	p.D2331Y	ENST00000350721	NM_001184.3	2331	Gac/Tac																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36988204	36988204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015921-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1637	268	445	0	ENST00000354822.5:c.449C>T	p.Pro150Leu	p.P150L	ENST00000354822	NM_001079668.2	150	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7579544	7579545	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	A			P-0015921-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			513	374	545	0	ENST00000269305.4:c.142_143delinsT	p.Asp48SerfsTer75	p.D48Sfs*75	ENST00000269305	NM_001126112.2	48	GAc/Tc																																																																														
ETV1	0	MSKCC	GRCh37	7	13971133	13971133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	13	291	0	ENST00000405192.2:c.796G>T	p.Asp266Tyr	p.D266Y	ENST00000405192	NM_001163147.1	266	Gac/Tac																																																																														
MTOR	0	MSKCC	GRCh37	1	11298578	11298578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	31	698	0	ENST00000361445.4:c.1883G>T	p.Arg628Leu	p.R628L	ENST00000361445	NM_004958.3	628	cGc/cTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49444412	49444412	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	25	785	3	ENST00000301067.7:c.2959G>T	p.Glu987Ter	p.E987*	ENST00000301067	NM_003482.3	987	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7579699	7579700	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	25	662	2	ENST00000269305.4:c.96_96+1delinsTT		p.X32_splice	ENST00000269305	NM_001126112.2	32																																																																															
ALK	0	MSKCC	GRCh37	2	29541271	29541271	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	22	420	1	ENST00000389048.3:c.1547-1G>T		p.X516_splice	ENST00000389048	NM_004304.4	516																																																																															
KDR	0	MSKCC	GRCh37	4	55979543	55979543	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	23	654	0	ENST00000263923.4:c.904C>A	p.Gln302Lys	p.Q302K	ENST00000263923	NM_002253.2	302	Caa/Aaa																																																																														
PREX2	0	MSKCC	GRCh37	8	69143587	69143587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	17	460	0	ENST00000288368.4:c.4795C>A	p.Pro1599Thr	p.P1599T	ENST00000288368	NM_024870.2	1599	Cca/Aca																																																																														
BCOR	0	MSKCC	GRCh37	X	39930290	39930290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	33	840	0	ENST00000378444.4:c.3174G>T	p.Gln1058His	p.Q1058H	ENST00000378444	NM_001123385.1	1058	caG/caT																																																																														
IRS1	0	MSKCC	GRCh37	2	227663199	227663199	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	111	764	0	ENST00000305123.5:c.256C>G	p.Leu86Val	p.L86V	ENST00000305123	NM_005544.2	86	Ctc/Gtc																																																																														
VHL	0	MSKCC	GRCh37	3	10191501	10191501	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	170	606	0	ENST00000256474.2:c.494T>A	p.Val165Asp	p.V165D	ENST00000256474	NM_000551.3	165	gTt/gAt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1953904	1953904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	62	1023	4	ENST00000382891.5:c.2083C>T	p.Leu695Phe	p.L695F	ENST00000382891	NM_133335.3	695	Ctt/Ttt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678426	88678426	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	198	754	0	ENST00000360948.2:c.1110C>G	p.His370Gln	p.H370Q	ENST00000360948	NM_001012338.2	370	caC/caG																																																																														
TP53	0	MSKCC	GRCh37	17	7578189	7578189	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	265	652	1	ENST00000269305.4:c.660T>A	p.Tyr220Ter	p.Y220*	ENST00000269305	NM_001126112.2	220	taT/taA																																																																														
KDR	0	MSKCC	GRCh37	4	55981495	55981495	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	121	588	0	ENST00000263923.4:c.442del	p.Ile148PhefsTer44	p.I148Ffs*44	ENST00000263923	NM_002253.2	148	Att/tt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	155	941	1	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																																																														
CBFB	0	MSKCC	GRCh37	16	67100587	67100587	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0023402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	86	558	0	ENST00000412916.2:c.285del	p.Tyr96IlefsTer2	p.Y96Ifs*2	ENST00000412916		95	gtA/gt																																																																														
CDH1	0	MSKCC	GRCh37	16	68847368	68847368	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	129	731	0	ENST00000261769.5:c.1290del	p.Asn431ThrfsTer6	p.N431Tfs*6	ENST00000261769	NM_004360.3	430	gtG/gt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879900	37879900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	131	957	0	ENST00000269571.5:c.2195G>C	p.Gly732Ala	p.G732A	ENST00000269571		732	gGc/gCc																																																																														
ARID2	0	MSKCC	GRCh37	12	46230530	46230530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	58	526	0	ENST00000334344.6:c.779del	p.Thr260AsnfsTer32	p.T260Nfs*32	ENST00000334344	NM_152641.2	260	aCa/aa																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	334	545	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	270	637	1	ENST00000263967.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaT																																																																														
BARD1	0	MSKCC	GRCh37	2	215595164	215595164	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3738888		P-0023407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	98	620	0	ENST00000260947.4:c.1972C>T	p.Arg658Cys	p.R658C	ENST00000260947	NM_000465.2	658	Cgc/Tgc																																																																														
FLT4	0	MSKCC	GRCh37	5	180039570	180039570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	319	895	1	ENST00000261937.6:c.3473C>T	p.Ala1158Val	p.A1158V	ENST00000261937	NM_182925.4	1158	gCg/gTg																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	246	645	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	230	807	0	ENST00000171111.5:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000171111	NM_203500.1	413	cGt/cTt																																																																														
FLT1	0	MSKCC	GRCh37	13	28913343	28913343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	213	762	2	ENST00000282397.4:c.2450C>A	p.Ala817Asp	p.A817D	ENST00000282397	NM_002019.4	817	gCc/gAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858691	9858691	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	76	518	0	ENST00000330684.3:c.2710A>T	p.Ile904Phe	p.I904F	ENST00000330684	NM_001134407.1	904	Att/Ttt																																																																														
STK11	0	MSKCC	GRCh37	19	1206992	1206993	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	201	628	0	ENST00000326873.7:c.82dup	p.Arg28ProfsTer135	p.R28Pfs*135	ENST00000326873	NM_000455.4	27	cac/caCc																																																																														
SHQ1	0	MSKCC	GRCh37	3	72897422	72897422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	95	456	0	ENST00000325599.8:c.70G>T	p.Ala24Ser	p.A24S	ENST00000325599	NM_018130.2	24	Gcc/Tcc																																																																														
KIT	0	MSKCC	GRCh37	4	55565934	55566106	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TGAGTGAATCGCTTCATTCTTCTCATGTTCTGTCTCTGTGGGAGATGATAAGTTTTCTCTTTCAGAAGAGTCTGTCCTGAAACTGCCTCGACTAGTGCGTCTGTCAGAGGTGGATTGTCTGGGAGAGTGTTGGGATTGCATATTTCCCCCTTTCATACCTCCACATGGAGATA	TGAGTGAATCGCTTCATTCTTCTCATGTTCTGTCTCTGTGGGAGATGATAAGTTTTCTCTTTCAGAAGAGTCTGTCCTGAAACTGCCTCGACTAGTGCGTCTGTCAGAGGTGGATTGTCTGGGAGAGTGTTGGGATTGCATATTTCCCCCTTTCATACCTCCACATGGAGATA	-			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	47	335	0	ENST00000288135.5:c.756+3_756+175del		p.X252_splice	ENST00000288135	NM_000222.2	252																																																																															
EPHA5	0	MSKCC	GRCh37	4	66356416	66356416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	75	407	0	ENST00000273854.3:c.1081C>A	p.Pro361Thr	p.P361T	ENST00000273854	NM_004439.5	361	Cct/Act																																																																														
RAD50	0	MSKCC	GRCh37	5	131895058	131895058	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	143	363	0	ENST00000265335.6:c.212A>T	p.Lys71Met	p.K71M	ENST00000265335		71	aAg/aTg																																																																														
ROS1	0	MSKCC	GRCh37	6	117700323	117700323	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	57	373	0	ENST00000368508.3:c.2497-1G>A		p.X833_splice	ENST00000368508	NM_002944.2	833																																																																															
KDM5C	0	MSKCC	GRCh37	X	53243968	53243968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	153	913	0	ENST00000375401.3:c.1025G>T	p.Cys342Phe	p.C342F	ENST00000375401	NM_004187.3	342	tGt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	484	819	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
FAT1	0	MSKCC	GRCh37	4	187524464	187524464	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs74511500		P-0023409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	63	721	0	ENST00000441802.2:c.11216C>T	p.Ala3739Val	p.A3739V	ENST00000441802	NM_005245.3	3739	gCg/gTg																																																																														
ALK	238	MSKCC	GRCh37	2	30143044	30143044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	212	963	1	ENST00000389048.3:c.482C>T	p.Ala161Val	p.A161V	ENST00000389048	NM_004304.4	161	gCg/gTg																																																																														
EP300	0	MSKCC	GRCh37	22	41546105	41546105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	169	554	0	ENST00000263253.7:c.2720C>T	p.Ala907Val	p.A907V	ENST00000263253	NM_001429.3	907	gCt/gTt																																																																														
KDM5A	0	MSKCC	GRCh37	12	495101	495101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201821956		P-0023409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	175	627	1	ENST00000399788.2:c.205C>T	p.Arg69Cys	p.R69C	ENST00000399788	NM_001042603.1	69	Cgt/Tgt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38186914	38186914	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	209	744	0	ENST00000317025.8:c.1563A>T	p.Gln521His	p.Q521H	ENST00000317025	NM_023034.1	521	caA/caT																																																																														
MED12	0	MSKCC	GRCh37	X	70349901	70349901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	223	479	0	ENST00000374080.3:c.3884G>A	p.Arg1295His	p.R1295H	ENST00000374080		1295	cGt/cAt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	161	882	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	129	924	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713469	40713469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	92	834	5	ENST00000373198.4:c.4046G>A	p.Arg1349His	p.R1349H	ENST00000373198	NM_133170.3	1349	cGt/cAt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	166	773	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	200	732	1	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119762	70119763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	83	832	0	ENST00000245479.2:c.768dup	p.Arg257AlafsTer39	p.R257Afs*39	ENST00000245479	NM_000346.3	255	gag/gaGg																																																																														
APC	0	MSKCC	GRCh37	5	112173684	112173685	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	74	577	0	ENST00000257430.4:c.2395dup	p.Tyr799LeufsTer4	p.Y799Lfs*4	ENST00000257430	NM_000038.5	798	gat/gaTt																																																																														
APC	0	MSKCC	GRCh37	5	112175625	112175625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	60	470	0	ENST00000257430.4:c.4334del	p.Thr1445LysfsTer28	p.T1445Kfs*28	ENST00000257430	NM_000038.5	1445	aCa/aa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0023442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	51	351	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	68	615	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
CBFB	0	MSKCC	GRCh37	16	67070644	67070645	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	19	191	0	ENST00000412916.2:c.271_272del	p.Glu91SerfsTer24	p.E91Sfs*24	ENST00000412916		90	AGa/a																																																																														
EP300	0	MSKCC	GRCh37	22	41573176	41573176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	64	615	1	ENST00000263253.7:c.5461C>T	p.Arg1821Ter	p.R1821*	ENST00000263253	NM_001429.3	1821	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	196	719	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	213	764	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	76	373	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg																																																																														
APC	0	MSKCC	GRCh37	5	112164585	112164585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	135	286	0	ENST00000257430.4:c.1659G>A	p.Trp553Ter	p.W553*	ENST00000257430	NM_000038.5	553	tgG/tgA																																																																														
LATS2	0	MSKCC	GRCh37	13	21562286	21562286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	530	854	0	ENST00000382592.4:c.1633C>T	p.Arg545Cys	p.R545C	ENST00000382592	NM_014572.2	545	Cgt/Tgt																																																																														
SPEN	0	MSKCC	GRCh37	1	16260312	16260312	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	83	555	1	ENST00000375759.3:c.7577A>T	p.Asp2526Val	p.D2526V	ENST00000375759	NM_015001.2	2526	gAt/gTt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843643	156843643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	130	924	1	ENST00000524377.1:c.1069G>A	p.Gly357Ser	p.G357S	ENST00000524377	NM_002529.3	357	Ggc/Agc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920424	114920437	+	protein_altering_variant	In_Frame_Del	DEL	ACAGACTTTATGGT	ACAGACTTTATGGT	CG			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	246	532	3	ENST00000543371.1:c.1365_1378delinsCG	p.Gln456_Cys460delinsGly	p.Q456_C460delinsG	ENST00000543371	NM_001198531.1	455	cgACAGACTTTATGGTgc/cgCGgc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729717	41729717	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	81	566	0	ENST00000242208.4:c.812A>C	p.Lys271Thr	p.K271T	ENST00000242208	NM_002192.2	271	aAg/aCg																																																																														
PREX2	0	MSKCC	GRCh37	8	69011974	69011974	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	463	824	1	ENST00000288368.4:c.2611A>G	p.Asn871Asp	p.N871D	ENST00000288368	NM_024870.2	871	Aat/Gat																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920436	114920436	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	246	515	0	ENST00000543371.1:c.1377G>C	p.Trp459Cys	p.W459C	ENST00000543371	NM_001198531.1	459	tgG/tgC																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0023447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	27	72	3	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249468	153249468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	207	536	1	ENST00000281708.4:c.1310G>T	p.Gly437Val	p.G437V	ENST00000281708	NM_033632.3	437	gGa/gTa																																																																														
CDC73	0	MSKCC	GRCh37	1	193111122	193111122	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	46	366	0	ENST00000367435.3:c.655G>C	p.Asp219His	p.D219H	ENST00000367435	NM_024529.4	219	Gat/Cat																																																																														
CIC	0	MSKCC	GRCh37	19	42798342	42798342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	136	736	0	ENST00000575354.2:c.4213G>A	p.Glu1405Lys	p.E1405K	ENST00000575354	NM_015125.3	1405	Gag/Aag																																																																														
KIT	0	MSKCC	GRCh37	4	55593585	55593593	+	inframe_deletion	In_Frame_Del	DEL	CCCATGTAT	CCCATGTAT	-			P-0023447-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	103	330	0	ENST00000288135.5:c.1651_1659del	p.Pro551_Tyr553del	p.P551_Y553del	ENST00000288135	NM_000222.2	551	CCCATGTAT/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	20	788	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	34	804	1	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16262190	16262190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	10	299	0	ENST00000375759.3:c.9455C>T	p.Ser3152Phe	p.S3152F	ENST00000375759	NM_015001.2	3152	tCc/tTc																																																																														
CARD11	0	MSKCC	GRCh37	7	2984016	2984016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	31	820	0	ENST00000396946.4:c.514G>C	p.Glu172Gln	p.E172Q	ENST00000396946	NM_032415.4	172	Gag/Cag																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1598	88	657	0	ENST00000244661.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000244661	NM_003537.3	74	Gaa/Aaa																																																																														
IDH2	0	MSKCC	GRCh37	15	90631710	90631710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	39	839	0	ENST00000330062.3:c.559G>A	p.Asp187Asn	p.D187N	ENST00000330062	NM_002168.2	187	Gac/Aac																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226430	2226430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	32	972	0	ENST00000398665.3:c.3910G>A	p.Asp1304Asn	p.D1304N	ENST00000398665	NM_032482.2	1304	Gac/Aac																																																																														
ERCC2	0	MSKCC	GRCh37	19	45855848	45855848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	22	905	0	ENST00000391945.4:c.1962C>G	p.Phe654Leu	p.F654L	ENST00000391945	NM_000400.3	654	ttC/ttG																																																																														
TOP1	0	MSKCC	GRCh37	20	39744053	39744053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	29	665	0	ENST00000361337.2:c.1681G>A	p.Glu561Lys	p.E561K	ENST00000361337	NM_003286.2	561	Gag/Aag																																																																														
FAT1	0	MSKCC	GRCh37	4	187541370	187541370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	25	529	0	ENST00000441802.2:c.6370C>T	p.His2124Tyr	p.H2124Y	ENST00000441802	NM_005245.3	2124	Cat/Tat																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111605	56111605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	53	406	0	ENST00000399503.3:c.205G>C	p.Glu69Gln	p.E69Q	ENST00000399503	NM_005921.1	69	Gag/Cag																																																																														
JAK2	0	MSKCC	GRCh37	9	5080261	5080261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	12	364	0	ENST00000381652.3:c.2164G>A	p.Glu722Lys	p.E722K	ENST00000381652	NM_004972.3	722	Gaa/Aaa																																																																														
TSC1	0	MSKCC	GRCh37	9	135785984	135785984	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	45	814	0	ENST00000298552.3:c.1237C>T	p.Gln413Ter	p.Q413*	ENST00000298552	NM_001162426.1	413	Cag/Tag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44870266	44870266	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0022341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	35	352	1	ENST00000377967.4:c.443+2T>A		p.X148_splice	ENST00000377967	NM_021140.2	148																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0022876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	73	461	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
GPS2	0	MSKCC	GRCh37	17	7216380	7216380	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	159	884	0	ENST00000380728.2:c.868C>T	p.Gln290Ter	p.Q290*	ENST00000380728		290	Cag/Tag																																																																														
MTOR	0	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	235	942	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	423	901	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																																																														
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	256	404	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056209	26056211	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0022879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	191	607	0	ENST00000343677.2:c.446_448del	p.Lys149del	p.K149del	ENST00000343677	NM_005319.3	149	aAGAgc/agc																																																																														
POLE	0	MSKCC	GRCh37	12	133226397	133226397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	271	1029	0	ENST00000320574.5:c.3661C>T	p.Pro1221Ser	p.P1221S	ENST00000320574	NM_006231.2	1221	Cct/Tct																																																																														
SMAD3	0	MSKCC	GRCh37	15	67358493	67358493	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0022879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	88	315	0	ENST00000327367.4:c.1A>G	p.Met1?	p.M1?	ENST00000327367	NM_005902.3	1	Atg/Gtg																																																																														
JAK3	0	MSKCC	GRCh37	19	17945945	17945945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	352	1423	2	ENST00000458235.1:c.1994C>T	p.Pro665Leu	p.P665L	ENST00000458235	NM_000215.3	665	cCc/cTc																																																																														
ALK	0	MSKCC	GRCh37	2	29416658	29416658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	165	529	0	ENST00000389048.3:c.4295G>A	p.Arg1432Gln	p.R1432Q	ENST00000389048	NM_004304.4	1432	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	117	1080	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	210	778	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
RB1	0	MSKCC	GRCh37	13	49039147	49039147	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	75	499	0	ENST00000267163.4:c.2228delT	p.Leu743Ter	p.L743*	ENST00000267163	NM_000321.2	742	gTt/gt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692883	89692883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	39	575	2	ENST00000371953.3:c.367C>T	p.His123Tyr	p.H123Y	ENST00000371953	NM_000314.4	123	Cac/Tac																																																																														
PALB2	0	MSKCC	GRCh37	16	23637719	23637719	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	88	690	0	ENST00000261584.4:c.2587-1G>A		p.X863_splice	ENST00000261584	NM_024675.3	863																																																																															
PRKAR1A	0	MSKCC	GRCh37	17	66524004	66524004	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	41	406	0	ENST00000358598.2:c.732G>C	p.Lys244Asn	p.K244N	ENST00000358598	NM_212471.2	244	aaG/aaC																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39637956	39637956	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	65	902	0	ENST00000262039.4:c.2373G>C	p.Gln791His	p.Q791H	ENST00000262039	NM_002647.2	791	caG/caC																																																																														
JAK3	0	MSKCC	GRCh37	19	17943410	17943410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	123	1215	0	ENST00000458235.1:c.2598G>T	p.Arg866Ser	p.R866S	ENST00000458235	NM_000215.3	866	agG/agT																																																																														
APC	0	MSKCC	GRCh37	5	112176344	112176344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	38	372	0	ENST00000257430.4:c.5053G>A	p.Glu1685Lys	p.E1685K	ENST00000257430	NM_000038.5	1685	Gaa/Aaa																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911302	29911302	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	33	530	0	ENST00000376809.5:c.601G>T	p.Glu201Ter	p.E201*	ENST00000376809	NM_002116.7	201	Gag/Tag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106545590	106545590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	68	678	0	ENST00000359195.3:c.3067C>A	p.His1023Asn	p.H1023N	ENST00000359195	NM_002649.2	1023	Cac/Aac																																																																														
MED12	0	MSKCC	GRCh37	X	70360600	70360600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022881-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	109	619	1	ENST00000374080.3:c.6160C>T	p.Gln2054Ter	p.Q2054*	ENST00000374080		2054	Cag/Tag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	27	624	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372025	55372025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	71	720	2	ENST00000297316.4:c.715G>A	p.Ala239Thr	p.A239T	ENST00000297316	NM_022454.3	239	Gcc/Acc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71021790	71021790	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	42	430	0	ENST00000318789.4:c.1568T>G	p.Phe523Cys	p.F523C	ENST00000318789	NM_032682.5	523	tTt/tGt																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858045	152858045	+	synonymous_variant	Silent	SNP	G	G	A			P-0023351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	58	570	0	ENST00000406277.2:c.570C>T	p.Ala190=	p.A190=	ENST00000406277	NM_152274.4	190	gcC/gcT																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274803	123274803	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	118	666	0	ENST00000358487.5:c.1115C>G	p.Ser372Cys	p.S372C	ENST00000358487	NM_000141.4	372	tCc/tGc																																																																														
ATRX	0	MSKCC	GRCh37	X	76937832	76937832	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	57	886	0	ENST00000373344.5:c.2916C>G	p.Asp972Glu	p.D972E	ENST00000373344	NM_000489.3	972	gaC/gaG																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	242	722	4	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	168	460	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	275	954	5	ENST00000269305.4:c.737T>A	p.Met246Lys	p.M246K	ENST00000269305	NM_001126112.2	246	aTg/aAg																																																																														
SMAD2	0	MSKCC	GRCh37	18	45395664	45395664	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	198	678	0	ENST00000262160.6:c.470del	p.Lys157ArgfsTer6	p.K157Rfs*6	ENST00000262160	NM_005901.5	157	aAg/ag																																																																														
TSC1	0	MSKCC	GRCh37	9	135771827	135771827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	230	888	9	ENST00000298552.3:c.3290G>A	p.Arg1097His	p.R1097H	ENST00000298552	NM_001162426.1	1097	cGt/cAt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993695	72993695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	193	738	6	ENST00000268489.5:c.350G>A	p.Gly117Asp	p.G117D	ENST00000268489	NM_006885.3	117	gGt/gAt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114911633	114911633	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	180	628	5	ENST00000543371.1:c.1151T>G	p.Leu384Arg	p.L384R	ENST00000543371	NM_001198531.1	384	cTt/cGt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457358	67457367	+	frameshift_variant	Frame_Shift_Del	DEL	TCGCCTTCAA	TCGCCTTCAA	-			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	826	834	8	ENST00000327367.4:c.333_342del	p.Phe111LeufsTer2	p.F111Lfs*2	ENST00000327367	NM_005902.3	111	tTCGCCTTCAAt/tt																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22006063	22006063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023353-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	162	693	10	ENST00000276925.6:c.340C>T	p.Arg114Cys	p.R114C	ENST00000276925	NM_004936.3	114	Cgt/Tgt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717687	89717690	+	frameshift_variant	Frame_Shift_Del	DEL	TTCA	TTCA	-			P-0023355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	97	557	0	ENST00000371953.3:c.713_716del	p.Phe238CysfsTer17	p.F238Cfs*17	ENST00000371953	NM_000314.4	238	TTCAtg/tg																																																																														
NF1	0	MSKCC	GRCh37	17	29576062	29576063	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCT			P-0023355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	83	748	0	ENST00000358273.4:c.4037_4040dup	p.His1348LeufsTer33	p.H1348Lfs*33	ENST00000358273	NM_001042492.2	1345	-/TTCT																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	187	870	2	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123276892	123276892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	89	631	0	ENST00000358487.5:c.1025G>T	p.Cys342Phe	p.C342F	ENST00000358487	NM_000141.4	342	tGc/tTc																																																																														
PGR	0	MSKCC	GRCh37	11	100920713	100920718	+	inframe_deletion	In_Frame_Del	DEL	TGAAGC	TGAAGC	-			P-0023358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	134	775	0	ENST00000325455.5:c.2430_2435del	p.Leu811_Gln812del	p.L811_Q812del	ENST00000325455	NM_001202474.3	810	aaGCTTCAa/aaa																																																																														
NF1	0	MSKCC	GRCh37	17	29663364	29663364	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	111	549	0	ENST00000358273.4:c.6020T>G	p.Leu2007Arg	p.L2007R	ENST00000358273	NM_001042492.2	2007	cTt/cGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	45	877	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	70	941	2	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593469	48593470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023359-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	29	489	0	ENST00000342988.3:c.1221dup	p.Phe408LeufsTer21	p.F408Lfs*21	ENST00000342988	NM_005359.5	407	gtc/gtCc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	521	509	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591837	48591837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	79	480	1	ENST00000342988.3:c.1000C>T	p.Gln334Ter	p.Q334*	ENST00000342988	NM_005359.5	334	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	102	716	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175963	176175963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	83	269	0	ENST00000367669.3:c.152G>T	p.Gly51Val	p.G51V	ENST00000367669	NM_022457.5	51	gGg/gTg																																																																														
SOS1	0	MSKCC	GRCh37	2	39251213	39251213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	36	794	0	ENST00000402219.2:c.1140G>T	p.Leu380Phe	p.L380F	ENST00000402219	NM_005633.3	380	ttG/ttT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212285277	212285277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	33	478	0	ENST00000342788.4:c.3024G>T	p.Leu1008Phe	p.L1008F	ENST00000342788	NM_005235.2	1008	ttG/ttT																																																																														
KDR	0	MSKCC	GRCh37	4	55960981	55960981	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	144	507	0	ENST00000263923.4:c.2959G>T	p.Glu987Ter	p.E987*	ENST00000263923	NM_002253.2	987	Gaa/Taa																																																																														
EPHA7	0	MSKCC	GRCh37	6	93969074	93969074	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	26	279	0	ENST00000369303.4:c.1922C>T	p.Ala641Val	p.A641V	ENST00000369303	NM_004440.3	641	gCa/gTa																																																																														
PMS2	0	MSKCC	GRCh37	7	6031690	6031690	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0023379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	38	574	0	ENST00000265849.7:c.904-2A>G		p.X302_splice	ENST00000265849	NM_000535.5	302																																																																															
MAP2K4	0	MSKCC	GRCh37	17	12028670	12028670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	106	676	0	ENST00000353533.5:c.873G>T	p.Trp291Cys	p.W291C	ENST00000353533	NM_003010.3	291	tgG/tgT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	294	755	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0023389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	364	798	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
NEGR1	0	MSKCC	GRCh37	1	72748055	72748055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	290	702	0	ENST00000357731.5:c.123del	p.Trp42GlyfsTer7	p.W42Gfs*7	ENST00000357731	NM_173808.2	41	ccC/cc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267720	198267720	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	122	606	0	ENST00000335508.6:c.1759T>G	p.Tyr587Asp	p.Y587D	ENST00000335508	NM_012433.2	587	Tac/Gac																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20148726	20148726	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0023389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	212	299	1	ENST00000379607.5:c.338-1G>A		p.X113_splice	ENST00000379607	NM_001412.3	113																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	232	766	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FLT1	0	MSKCC	GRCh37	13	28901685	28901685	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	146	500	0	ENST00000282397.4:c.2710C>T	p.Pro904Ser	p.P904S	ENST00000282397	NM_002019.4	904	Cct/Tct																																																																														
KMT2A	0	MSKCC	GRCh37	11	118348729	118348729	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	192	399	0	ENST00000534358.1:c.3384del	p.Ile1129SerfsTer18	p.I1129Sfs*18	ENST00000534358	NM_005933.3	1128	Ccc/cc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118348756	118348756	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	208	432	1	ENST00000534358.1:c.3409A>G	p.Arg1137Gly	p.R1137G	ENST00000534358	NM_005933.3	1137	Aga/Gga																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522563	176522563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023392-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	176	711	1	ENST00000292408.4:c.1660G>A	p.Ala554Thr	p.A554T	ENST00000292408	NM_213647.1	554	Gcc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0023413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	31	757	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	27	588	1	ENST00000371953.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000371953	NM_000314.4	130	cGa/cTa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879655	37879655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	25	774	2	ENST00000269571.5:c.2030G>T	p.Arg677Leu	p.R677L	ENST00000269571		677	cGa/cTa																																																																														
FAT1	0	MSKCC	GRCh37	4	187527291	187527291	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	29	653	1	ENST00000441802.2:c.10283T>A	p.Ile3428Asn	p.I3428N	ENST00000441802	NM_005245.3	3428	aTc/aAc																																																																														
NSD1	0	MSKCC	GRCh37	5	176707585	176707585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	19	622	0	ENST00000439151.2:c.5642G>A	p.Arg1881Lys	p.R1881K	ENST00000439151	NM_022455.4	1881	aGg/aAg																																																																														
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	55	554	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa																																																																														
AXIN1	0	MSKCC	GRCh37	16	343540	343540	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	107	862	0	ENST00000262320.3:c.2134C>T	p.Arg712Ter	p.R712*	ENST00000262320	NM_003502.3	712	Cga/Tga																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163807	32163807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	80	677	1	ENST00000375023.3:c.5419G>A	p.Ala1807Thr	p.A1807T	ENST00000375023	NM_004557.3	1807	Gct/Act																																																																														
ATM	0	MSKCC	GRCh37	11	108203622	108203623	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0023419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	188	348	1	ENST00000278616.4:c.7925_7926del	p.Arg2642LysfsTer13	p.R2642Kfs*13	ENST00000278616	NM_000051.3	2641	cAG/c																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061222	38061230	+	inframe_deletion	In_Frame_Del	DEL	TTCTCGAAC	TTCTCGAAC	-			P-0023419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	1341	664	0	ENST00000250448.2:c.759_767del	p.Met253_Asn256delinsIle	p.M253_N256delinsI	ENST00000250448	NM_004496.3	253	atGTTCGAGAAc/atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	140	838	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612754	228612754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	106	927	1	ENST00000366696.1:c.273G>A	p.Met91Ile	p.M91I	ENST00000366696	NM_003493.2	91	atG/atA																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344809	118344809	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	75	564	0	ENST00000534358.1:c.2935A>G	p.Thr979Ala	p.T979A	ENST00000534358	NM_005933.3	979	Act/Gct																																																																														
FLCN	0	MSKCC	GRCh37	17	17120387	17120387	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	82	700	0	ENST00000285071.4:c.1172T>C	p.Leu391Pro	p.L391P	ENST00000285071	NM_144997.5	391	cTt/cCt																																																																														
KIT	0	MSKCC	GRCh37	4	55589774	55589774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	38	539	0	ENST00000288135.5:c.1256A>G	p.Asp419Gly	p.D419G	ENST00000288135	NM_000222.2	419	gAc/gGc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974751	21974751	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	67	408	0	ENST00000304494.5:c.76G>T	p.Glu26Ter	p.E26*	ENST00000304494	NM_000077.4	26	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974751	21974751	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	67	408	0	ENST00000304494.5:c.76G>T	p.Glu26Ter	p.E26*	ENST00000304494	NM_000077.4	26	Gag/Tag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2220221	2220221	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	78	693	2	ENST00000398665.3:c.2806G>T	p.Gly936Cys	p.G936C	ENST00000398665	NM_032482.2	936	Ggc/Tgc																																																																														
PAK7	0	MSKCC	GRCh37	20	9523275	9523275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	78	728	3	ENST00000353224.5:c.1962G>T	p.Arg654Ser	p.R654S	ENST00000353224	NM_177990.2	654	agG/agT																																																																														
TP53	0	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	73	688	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
BCL10	0	MSKCC	GRCh37	1	85733453	85733453	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	102	699	0	ENST00000370580.1:c.559T>G	p.Phe187Val	p.F187V	ENST00000370580	NM_003921.4	187	Ttc/Gtc																																																																														
POLE	0	MSKCC	GRCh37	12	133220509	133220509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	51	817	0	ENST00000320574.5:c.4204G>T	p.Val1402Leu	p.V1402L	ENST00000320574	NM_006231.2	1402	Gtg/Ttg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576101	88576101	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	29	832	0	ENST00000360948.2:c.1572C>G	p.His524Gln	p.H524Q	ENST00000360948	NM_001012338.2	524	caC/caG																																																																														
PLCG2	0	MSKCC	GRCh37	16	81969983	81969983	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	14	422	0	ENST00000359376.3:c.3052G>T	p.Asp1018Tyr	p.D1018Y	ENST00000359376	NM_002661.3	1018	Gat/Tat																																																																														
EZH1	0	MSKCC	GRCh37	17	40880928	40880928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	38	858	3	ENST00000428826.2:c.32G>T	p.Cys11Phe	p.C11F	ENST00000428826		11	tGt/tTt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36219910	36219910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	57	883	1	ENST00000222270.7:c.4712C>T	p.Ala1571Val	p.A1571V	ENST00000222270	NM_014727.1	1571	gCc/gTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221012	36221012	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	43	760	0	ENST00000222270.7:c.5062C>G	p.Leu1688Val	p.L1688V	ENST00000222270	NM_014727.1	1688	Ctc/Gtc																																																																														
ALK	0	MSKCC	GRCh37	2	29432688	29432688	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	664	35	0	ENST00000389048.3:c.3800A>C	p.Lys1267Thr	p.K1267T	ENST00000389048	NM_004304.4	1267	aAg/aCg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100937	41100937	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	680	78	0	ENST00000373198.4:c.1419C>A	p.Ser473Arg	p.S473R	ENST00000373198	NM_133170.3	473	agC/agA																																																																														
CHEK2	0	MSKCC	GRCh37	22	29130475	29130475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	74	870	0	ENST00000328354.6:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000328354	NM_007194.3	79	Gaa/Caa																																																																														
INPP4B	0	MSKCC	GRCh37	4	143007302	143007302	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	33	706	0	ENST00000262992.4:c.2482G>C	p.Ala828Pro	p.A828P	ENST00000262992	NM_001101669.1	828	Gca/Cca																																																																														
CARD11	0	MSKCC	GRCh37	7	2953019	2953019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	108	851	3	ENST00000396946.4:c.2921G>A	p.Arg974His	p.R974H	ENST00000396946	NM_032415.4	974	cGc/cAc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106522611	106522611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	56	747	0	ENST00000359195.3:c.2588G>T	p.Cys863Phe	p.C863F	ENST00000359195	NM_002649.2	863	tGc/tTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499651	8499651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	503	16	0	ENST00000356435.5:c.2318C>A	p.Ala773Glu	p.A773E	ENST00000356435		773	gCa/gAa																																																																														
KLF4	0	MSKCC	GRCh37	9	110250074	110250074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	43	755	2	ENST00000374672.4:c.601G>A	p.Ala201Thr	p.A201T	ENST00000374672	NM_004235.4	201	Gcc/Acc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106545740	106545740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	200	916	2	ENST00000359195.3:c.3217G>A	p.Glu1073Lys	p.E1073K	ENST00000359195	NM_002649.2	1073	Gaa/Aaa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149499649	149499747	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATGCTCTCCGGAGCCATCCACTTTAAAGGCAAAAAGGTCTGTAGGGAGGTCAGGACAGGTGCTGAGTGCAAGGAAGGACCTCAGCCCCACTCTGCACCT	ATGCTCTCCGGAGCCATCCACTTTAAAGGCAAAAAGGTCTGTAGGGAGGTCAGGACAGGTGCTGAGTGCAAGGAAGGACCTCAGCCCCACTCTGCACCT	-			P-0023470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	130	746	0	ENST00000261799.4:c.2587-61_2624del		p.X863_splice	ENST00000261799	NM_002609.3	863																																																																															
ATRX	0	MSKCC	GRCh37	X	76937302	76937387	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTCCTTAGTATTTCTCTTTGAACTTAAATTTCTTCTTTCCCTCAATTCTATTCTTTTCAGTCTCTTATCAGAAGAGTTACAACC	ATTTCCTTAGTATTTCTCTTTGAACTTAAATTTCTTCTTTCCCTCAATTCTATTCTTTTCAGTCTCTTATCAGAAGAGTTACAACC	-			P-0023470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	213	414	0	ENST00000373344.5:c.3361_3446del	p.Gly1121ThrfsTer8	p.G1121Tfs*8	ENST00000373344	NM_000489.3	1121	GGTTGTAACTCTTCTGATAAGAGACTGAAAAGAATAGAATTGAGGGAAAGAAGAAATTTAAGTTCAAAGAGAAATACTAAGGAAATa/a																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	149	972	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7579314	7579314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	55	730	0	ENST00000269305.4:c.373A>C	p.Thr125Pro	p.T125P	ENST00000269305	NM_001126112.2	125	Acg/Ccg																																																																														
STK11	0	MSKCC	GRCh37	19	1220394	1220395	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	47	895	2	ENST00000326873.7:c.487_488delinsTT	p.Gly163Phe	p.G163F	ENST00000326873	NM_000455.4	163	GGc/TTc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272213	15272213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	68	809	2	ENST00000263388.2:c.6226G>T	p.Gly2076Trp	p.G2076W	ENST00000263388	NM_000435.2	2076	Ggg/Tgg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584776	48584779	+	frameshift_variant	Frame_Shift_Del	DEL	ACGG	ACGG	CCT			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	70	746	1	ENST00000342988.3:c.854_857delinsCCT	p.Asn285ThrfsTer51	p.N285Tfs*51	ENST00000342988	NM_005359.5	285	aACGGc/aCCTc																																																																														
TCF3	0	MSKCC	GRCh37	19	1650225	1650225	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	84	1004	0	ENST00000344749.5:c.23C>G	p.Ala8Gly	p.A8G	ENST00000344749	NM_001136139.2	8	gCg/gGg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45860941	45860941	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	74	1006	0	ENST00000391945.4:c.1254C>G	p.Ile418Met	p.I418M	ENST00000391945	NM_000400.3	418	atC/atG																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391057	89391057	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	887	75	0	ENST00000336596.2:c.1123C>G	p.Pro375Ala	p.P375A	ENST00000336596	NM_005233.5	375	Cca/Gca																																																																														
EPHB1	0	MSKCC	GRCh37	3	134825409	134825409	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	55	849	1	ENST00000398015.3:c.925C>T	p.Arg309Ter	p.R309*	ENST00000398015	NM_004441.4	309	Cga/Tga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356169	66356169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	70	813	0	ENST00000273854.3:c.1328C>G	p.Ala443Gly	p.A443G	ENST00000273854	NM_004439.5	443	gCa/gGa																																																																														
APC	0	MSKCC	GRCh37	5	112170702	112170702	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	39	810	0	ENST00000257430.4:c.1798A>T	p.Thr600Ser	p.T600S	ENST00000257430	NM_000038.5	600	Act/Tct																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149501544	149501544	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	66	809	0	ENST00000261799.4:c.2243C>G	p.Ser748Trp	p.S748W	ENST00000261799	NM_002609.3	748	tCg/tGg																																																																														
HLA-A	0	MSKCC	GRCh37	6	29911075	29911075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	54	955	3	ENST00000376809.5:c.374G>T	p.Cys125Phe	p.C125F	ENST00000376809	NM_002116.7	125	tGc/tTc																																																																														
HGF	0	MSKCC	GRCh37	7	81346547	81346547	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	44	468	0	ENST00000222390.5:c.1405+1G>T		p.X469_splice	ENST00000222390	NM_000601.4	469																																																																															
NBN	0	MSKCC	GRCh37	8	90976658	90976659	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0023471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	45	820	2	ENST00000265433.3:c.973_974delinsAT	p.Pro325Ile	p.P325I	ENST00000265433	NM_002485.4	325	CCt/ATt																																																																														
CDH1	0	MSKCC	GRCh37	16	68867234	68867234	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	115	535	0	ENST00000261769.5:c.2481T>A	p.Tyr827Ter	p.Y827*	ENST00000261769	NM_004360.3	827	taT/taA																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	56	385	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32166710	32166710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	100	719	1	ENST00000375023.3:c.4528G>A	p.Gly1510Ser	p.G1510S	ENST00000375023	NM_004557.3	1510	Ggt/Agt																																																																														
KLF4	0	MSKCC	GRCh37	9	110249441	110249441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	153	797	0	ENST00000374672.4:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000374672	NM_004235.4	378	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	47	934	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	118	935	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	55	685	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	37	743	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858561	9858561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	67	780	0	ENST00000330684.3:c.2840G>C	p.Arg947Thr	p.R947T	ENST00000330684	NM_001134407.1	947	aGg/aCg																																																																														
RNF43	0	MSKCC	GRCh37	17	56492685	56492685	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	25	651	0	ENST00000407977.2:c.252+2C>A		p.X84_splice	ENST00000407977		84																																																																															
CDKN2A	0	MSKCC	GRCh37	9	21971086	21971100	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAAGCCCTCCCGG	AGGAAGCCCTCCCGG	T			P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	29	658	2	ENST00000304494.5:c.258_272delinsA	p.Arg87GlyfsTer28	p.R87Gfs*28	ENST00000304494	NM_000077.4	86	gcCCGGGAGGGCTTCCTg/gcAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971086	21971100	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAAGCCCTCCCGG	AGGAAGCCCTCCCGG	T			P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	29	658	2	ENST00000304494.5:c.258_272delinsA	p.Arg87GlyfsTer28	p.R87Gfs*28	ENST00000304494	NM_000077.4	86	gcCCGGGAGGGCTTCCTg/gcAg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971086	21971100	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAAGCCCTCCCGG	AGGAAGCCCTCCCGG	T			P-0023475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	29	658	2	ENST00000304494.5:c.258_272delinsA	p.Arg87GlyfsTer28	p.R87Gfs*28	ENST00000304494	NM_000077.4	86	gcCCGGGAGGGCTTCCTg/gcAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	543	1032	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579522	7579522	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	261	1134	1	ENST00000269305.4:c.165del	p.Glu56LysfsTer67	p.E56Kfs*67	ENST00000269305	NM_001126112.2	55	acT/ac																																																																														
PBRM1	0	MSKCC	GRCh37	3	52620615	52620616	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TTAA			P-0023478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	227	884	0	ENST00000394830.3:c.3134_3137dup	p.Lys1046AsnfsTer2	p.K1046Nfs*2	ENST00000394830	NM_018313.4	1046	aag/aaTTAAg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			702	87	625	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	130	519	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																																																														
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			612	127	653	2	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			613	113	721	0	ENST00000269305.4:c.857A>C	p.Glu286Ala	p.E286A	ENST00000269305	NM_001126112.2	286	gAa/gCa																																																																														
ASXL2	0	MSKCC	GRCh37	2	25965377	25965377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			581	148	637	0	ENST00000435504.4:c.3829G>T	p.Val1277Leu	p.V1277L	ENST00000435504		1277	Gtg/Ttg																																																																														
MSH3	0	MSKCC	GRCh37	5	79960997	79960997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014729-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	27	442	0	ENST00000265081.6:c.394A>G	p.Lys132Glu	p.K132E	ENST00000265081	NM_002439.4	132	Aag/Gag																																																																														
RBM10	0	MSKCC	GRCh37	X	47039659	47039666	+	frameshift_variant	Frame_Shift_Del	DEL	ACTATCGA	ACTATCGA	-			P-0023368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	187	755	0	ENST00000329236.7:c.877_884del	p.Thr293ArgfsTer7	p.T293Rfs*7	ENST00000329236	NM_001204466.1	293	ACTATCGAc/c																																																																														
TP53	0	MSKCC	GRCh37	17	7578196	7578197	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023371-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	283	671	0	ENST00000269305.4:c.652dup	p.Val218GlyfsTer4	p.V218Gfs*4	ENST00000269305	NM_001126112.2	218	gtg/gGtg																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	151	573	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
INPP4A	0	MSKCC	GRCh37	2	99160439	99160439	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	126	469	0	ENST00000074304.5:c.918G>C	p.Gln306His	p.Q306H	ENST00000074304	NM_001134224.1	306	caG/caC																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0023373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	205	804	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	25	507	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974695	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	25	507	0	ENST00000304494.5:c.132del	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/ta																																																																														
CDK6	0	MSKCC	GRCh37	7	92354975	92354975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	60	354	1	ENST00000265734.4:c.502C>T	p.Arg168Cys	p.R168C	ENST00000265734	NM_001259.6	168	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	171	543	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	648	835	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
NRAS	0	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	250	813	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729180	66729180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	670	820	0	ENST00000307102.5:c.388T>C	p.Tyr130His	p.Y130H	ENST00000307102	NM_002755.3	130	Tat/Cat																																																																														
HGF	0	MSKCC	GRCh37	7	81358978	81358978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	355	745	1	ENST00000222390.5:c.983G>A	p.Arg328His	p.R328H	ENST00000222390	NM_000601.4	328	cGt/cAt																																																																														
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	310	413	1	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																																																														
CSF3R	0	MSKCC	GRCh37	1	36935409	36935409	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	271	804	2	ENST00000361632.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000361632		440	Cga/Tga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66356112	66356112	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	134	646	0	ENST00000273854.3:c.1385T>C	p.Val462Ala	p.V462A	ENST00000273854	NM_004439.5	462	gTa/gCa																																																																														
FLT4	0	MSKCC	GRCh37	5	180056350	180056350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	246	856	1	ENST00000261937.6:c.894C>A	p.His298Gln	p.H298Q	ENST00000261937	NM_182925.4	298	caC/caA																																																																														
PTP4A1	0	MSKCC	GRCh37	6	64290041	64290041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	238	728	0	ENST00000370651.3:c.484G>T	p.Asp162Tyr	p.D162Y	ENST00000370651	NM_003463.4	162	Gat/Tat																																																																														
RICTOR	0	MSKCC	GRCh37	5	38981977	38981977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	24	441	0	ENST00000357387.3:c.745G>A	p.Glu249Lys	p.E249K	ENST00000357387	NM_152756.3	249	Gaa/Aaa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87635188	87635188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	39	568	0	ENST00000277120.3:c.2240C>T	p.Thr747Met	p.T747M	ENST00000277120		747	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0023422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	378	686	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66523985	66523985	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	119	309	0	ENST00000358598.2:c.713G>C	p.Ser238Thr	p.S238T	ENST00000358598	NM_212471.2	238	aGc/aCc																																																																														
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0023422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	268	782	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
IRS2	0	MSKCC	GRCh37	13	110436504	110436504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	430	1177	1	ENST00000375856.3:c.1897G>A	p.Gly633Arg	p.G633R	ENST00000375856	NM_003749.2	633	Gga/Aga																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	123	641	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	51	700	0				ENST00000310581	NM_198253.2																																																																																
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0023423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	133	629	1	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																																																														
FLT3	0	MSKCC	GRCh37	13	28599058	28599058	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	23	862	1	ENST00000241453.7:c.2230C>T	p.Gln744Ter	p.Q744*	ENST00000241453	NM_004119.2	744	Cag/Tag																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519496	137519496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	25	527	0	ENST00000367739.4:c.1142C>T	p.Pro381Leu	p.P381L	ENST00000367739	NM_000416.2	381	cCt/cTt																																																																														
KMT2C	0	MSKCC	GRCh37	7	152132751	152132751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	71	677	0	ENST00000262189.6:c.121C>T	p.Arg41Cys	p.R41C	ENST00000262189	NM_170606.2	41	Cgc/Tgc																																																																														
ATM	0	MSKCC	GRCh37	11	108214078	108214078	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	16	451	0	ENST00000278616.4:c.8398C>T	p.Gln2800Ter	p.Q2800*	ENST00000278616	NM_000051.3	2800	Cag/Tag																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041821	14041821	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	17	686	0	ENST00000311895.7:c.2368C>G	p.Leu790Val	p.L790V	ENST00000311895	NM_005236.2	790	Ctt/Gtt																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041975	14041975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	14	456	1	ENST00000311895.7:c.2522C>T	p.Ser841Leu	p.S841L	ENST00000311895	NM_005236.2	841	tCa/tTa																																																																														
EP300	0	MSKCC	GRCh37	22	41489043	41489043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	19	687	1	ENST00000263253.7:c.35C>T	p.Ser12Leu	p.S12L	ENST00000263253	NM_001429.3	12	tCa/tTa																																																																														
ROS1	0	MSKCC	GRCh37	6	117724314	117724314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	24	713	0	ENST00000368508.3:c.565C>T	p.His189Tyr	p.H189Y	ENST00000368508	NM_002944.2	189	Cat/Tat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	50	774	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	332	671	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	0	MSKCC	GRCh37	1	27087944	27087944	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	267	823	0	ENST00000324856.7:c.2231C>G	p.Ser744Ter	p.S744*	ENST00000324856	NM_006015.4	744	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	298	885	3	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
POLE	0	MSKCC	GRCh37	12	133248872	133248872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	156	913	0	ENST00000320574.5:c.1723G>A	p.Glu575Lys	p.E575K	ENST00000320574	NM_006231.2	575	Gag/Aag																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120411	94120411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	129	474	0	ENST00000369303.4:c.640A>G	p.Ile214Val	p.I214V	ENST00000369303	NM_004440.3	214	Atc/Gtc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087473	27087473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	331	977	0	ENST00000324856.7:c.2047C>T	p.Pro683Ser	p.P683S	ENST00000324856	NM_006015.4	683	Cct/Tct																																																																														
PGR	0	MSKCC	GRCh37	11	100920781	100920781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	31	609	0	ENST00000325455.5:c.2367G>A	p.Met789Ile	p.M789I	ENST00000325455	NM_001202474.3	789	atG/atA																																																																														
FLT1	0	MSKCC	GRCh37	13	28896954	28896954	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	133	698	0	ENST00000282397.4:c.2926del	p.Ser976ValfsTer2	p.S976Vfs*2	ENST00000282397	NM_002019.4	976	Agt/gt																																																																														
FLT1	0	MSKCC	GRCh37	13	28913428	28913428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	168	573	0	ENST00000282397.4:c.2365G>C	p.Glu789Gln	p.E789Q	ENST00000282397	NM_002019.4	789	Gaa/Caa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807978	3807978	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	449	827	0	ENST00000262367.5:c.3441C>A	p.Tyr1147Ter	p.Y1147*	ENST00000262367	NM_004380.2	1147	taC/taA																																																																														
RPTOR	0	MSKCC	GRCh37	17	78936727	78936727	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	148	953	0	ENST00000306801.3:c.3810-1G>T		p.X1270_splice	ENST00000306801	NM_020761.2	1270																																																																															
PBRM1	0	MSKCC	GRCh37	3	52702585	52702585	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	102	826	1	ENST00000394830.3:c.313G>C	p.Glu105Gln	p.E105Q	ENST00000394830	NM_018313.4	105	Gag/Cag																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652057	36652058	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	384	944	0	ENST00000244741.5:c.182dupG	p.Asp62Ter	p.D62*	ENST00000244741	NM_000389.4	60	gag/gaGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577101	7577102	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCA			P-0023212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	127	890	0	ENST00000269305.4:c.783_836dup	p.Gly262_Gly279dup	p.G262_G279dup	ENST00000269305	NM_001126112.2	262	ggg/ggTGGTAATCTACTGGGACGGAACAGCTTTGAGGTGCGTGTTTGTGCCTGTCCTGGg																																																																														
BRD4	0	MSKCC	GRCh37	19	15350061	15350061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	284	923	0	ENST00000263377.2:c.3591G>C	p.Lys1197Asn	p.K1197N	ENST00000263377	NM_058243.2	1197	aaG/aaC																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111741	56111741	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023212-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			42	48	115	0	ENST00000399503.3:c.341A>T	p.His114Leu	p.H114L	ENST00000399503	NM_005921.1	114	cAc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7578527	7578528	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0023274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	674	870	0	ENST00000269305.4:c.402_403del	p.Phe134LeufsTer14	p.F134Lfs*14	ENST00000269305	NM_001126112.2	134	ttTTgc/ttgc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9775612	9775612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	239	576	2	ENST00000377346.4:c.155G>A	p.Arg52His	p.R52H	ENST00000377346	NM_005026.3	52	cGc/cAc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807928	3807928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	442	681	1	ENST00000262367.5:c.3491C>A	p.Ala1164Asp	p.A1164D	ENST00000262367	NM_004380.2	1164	gCc/gAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76813099	76813107	+	inframe_deletion	In_Frame_Del	DEL	CTTATCTTC	CTTATCTTC	-			P-0023274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	236	642	0	ENST00000373344.5:c.6514_6522del	p.Glu2172_Lys2174del	p.E2172_K2174del	ENST00000373344	NM_000489.3	2172	GAAGATAAG/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	147	834	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0023278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	88	835	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																																																														
CARD11	0	MSKCC	GRCh37	7	2951852	2951852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	191	966	2	ENST00000396946.4:c.3098C>T	p.Ala1033Val	p.A1033V	ENST00000396946	NM_032415.4	1033	gCg/gTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	125	837	0	ENST00000269305.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000269305	NM_001126112.2	274	Gtt/Ctt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114910884	114910896	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TAAGTGTTGCTGT	TAAGTGTTGCTGT	-			P-0023281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	77	619	0	ENST00000543371.1:c.1001+3_1001+15del		p.X334_splice	ENST00000543371	NM_001198531.1	334																																																																															
GRIN2A	0	MSKCC	GRCh37	16	9862844	9862844	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs74458073		P-0023281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	118	850	0	ENST00000330684.3:c.2459T>G	p.Val820Gly	p.V820G	ENST00000330684	NM_001134407.1	820	gTa/gGa																																																																														
ALK	0	MSKCC	GRCh37	2	29432691	29432691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	99	759	1	ENST00000389048.3:c.3797C>T	p.Ala1266Val	p.A1266V	ENST00000389048	NM_004304.4	1266	gCc/gTc																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665372	138665372	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023281-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	137	855	1	ENST00000330315.3:c.193A>T	p.Met65Leu	p.M65L	ENST00000330315	NM_023067.3	65	Atg/Ttg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	40	564	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	103	748	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	83	726	1	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																																																														
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	65	861	1	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	85	892	2	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																																																														
MST1R	0	MSKCC	GRCh37	3	49936518	49936518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	131	916	5	ENST00000296474.3:c.1409G>A	p.Arg470His	p.R470H	ENST00000296474	NM_002447.2	470	cGt/cAt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088681	27088682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	134	944	0	ENST00000324856.7:c.2296dup	p.Gln766ProfsTer51	p.Q766Pfs*51	ENST00000324856	NM_006015.4	764	tcc/tCcc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	34	490	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																																																														
AGO2	0	MSKCC	GRCh37	8	141542584	141542584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	124	814	1	ENST00000220592.5:c.2402C>T	p.Ala801Val	p.A801V	ENST00000220592	NM_012154.3	801	gCg/gTg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81972512	81972512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	98	775	2	ENST00000359376.3:c.3305C>T	p.Thr1102Met	p.T1102M	ENST00000359376	NM_002661.3	1102	aCg/aTg																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519504	137519505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	53	551	1	ENST00000367739.4:c.1132_1133dupAG	p.Ser378ArgfsTer6	p.S378Rfs*6	ENST00000367739	NM_000416.2	378	agt/agAGt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11096931	11096931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	110	1107	1	ENST00000344626.4:c.422C>T	p.Ser141Leu	p.S141L	ENST00000344626	NM_003072.3	141	tCg/tTg																																																																														
FOXO1	2308	MSKCC	GRCh37	13	41133898	41133898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	40	494	0	ENST00000379561.5:c.1730del	p.Gly577AlafsTer5	p.G577Afs*5	ENST00000379561	NM_002015.3	577	gGc/gc																																																																														
SPEN	0	MSKCC	GRCh37	1	16261858	16261858	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	59	726	1	ENST00000375759.3:c.9126del	p.Ser3043AlafsTer48	p.S3043Afs*48	ENST00000375759	NM_015001.2	3041	caC/ca																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137327	64137327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	107	829	1	ENST00000334205.4:c.1759G>T	p.Asp587Tyr	p.D587Y	ENST00000334205	NM_003942.2	587	Gac/Tac																																																																														
YAP1	0	MSKCC	GRCh37	11	102094425	102094425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	48	762	1	ENST00000282441.5:c.1105G>A	p.Gly369Arg	p.G369R	ENST00000282441	NM_001130145.2	369	Ggg/Agg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431722	49431722	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	111	896	1	ENST00000301067.7:c.9417del	p.Lys3140ArgfsTer2	p.K3140Rfs*2	ENST00000301067	NM_003482.3	3139	ccC/cc																																																																														
POLE	0	MSKCC	GRCh37	12	133219446	133219446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	138	1021	0	ENST00000320574.5:c.4688C>T	p.Thr1563Ile	p.T1563I	ENST00000320574	NM_006231.2	1563	aCc/aTc																																																																														
LATS2	0	MSKCC	GRCh37	13	21562487	21562487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	20	158	0	ENST00000382592.4:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000382592	NM_014572.2	478	Gcc/Acc																																																																														
BLM	0	MSKCC	GRCh37	15	91312714	91312714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	47	640	0	ENST00000355112.3:c.2453G>A	p.Arg818His	p.R818H	ENST00000355112	NM_000057.2	818	cGc/cAc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944286	81944286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	56	807	0	ENST00000359376.3:c.1895C>A	p.Thr632Lys	p.T632K	ENST00000359376	NM_002661.3	632	aCg/aAg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346246	89346246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	75	461	0	ENST00000301030.4:c.6704C>T	p.Pro2235Leu	p.P2235L	ENST00000301030	NM_001256183.1	2235	cCg/cTg																																																																														
NCOR1	0	MSKCC	GRCh37	17	15989709	15989709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	73	594	0	ENST00000268712.3:c.3064G>A	p.Val1022Ile	p.V1022I	ENST00000268712	NM_006311.3	1022	Gtt/Att																																																																														
ERBB2	0	MSKCC	GRCh37	17	37873631	37873631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	148	978	0	ENST00000269571.5:c.1796G>A	p.Arg599His	p.R599H	ENST00000269571		599	cGc/cAc																																																																														
STAT3	0	MSKCC	GRCh37	17	40489789	40489789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	100	806	0	ENST00000264657.5:c.637A>G	p.Met213Val	p.M213V	ENST00000264657	NM_139276.2	213	Atg/Gtg																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533686	63533686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	105	719	0	ENST00000307078.5:c.1468G>A	p.Ala490Thr	p.A490T	ENST00000307078	NM_004655.3	490	Gcg/Acg																																																																														
CARM1	0	MSKCC	GRCh37	19	11031197	11031197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	90	921	0	ENST00000327064.4:c.1282G>A	p.Ala428Thr	p.A428T	ENST00000327064	NM_199141.1	428	Gcc/Acc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25470572	25470572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	111	1017	0	ENST00000264709.3:c.902G>C	p.Arg301Pro	p.R301P	ENST00000264709	NM_175629.2	301	cGg/cCg																																																																														
ALK	0	MSKCC	GRCh37	2	29474101	29474101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	116	709	1	ENST00000389048.3:c.2074G>A	p.Gly692Arg	p.G692R	ENST00000389048	NM_004304.4	692	Ggg/Agg																																																																														
TOP1	0	MSKCC	GRCh37	20	39728858	39728858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	71	501	1	ENST00000361337.2:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000361337	NM_003286.2	380	Gag/Aag																																																																														
CHEK2	0	MSKCC	GRCh37	22	29092947	29092947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	77	812	0	ENST00000328354.6:c.1037G>A	p.Arg346His	p.R346H	ENST00000328354	NM_007194.3	346	cGt/cAt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31504712	31504712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	97	897	3	ENST00000344624.3:c.1618G>A	p.Ala540Thr	p.A540T	ENST00000344624		540	Gca/Aca																																																																														
MSH3	0	MSKCC	GRCh37	5	80064793	80064793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	36	520	2	ENST00000265081.6:c.2224G>A	p.Ala742Thr	p.A742T	ENST00000265081	NM_002439.4	742	Gca/Aca																																																																														
CSF1R	0	MSKCC	GRCh37	5	149435804	149435804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	115	919	0	ENST00000286301.3:c.2420C>T	p.Ser807Phe	p.S807F	ENST00000286301	NM_005211.3	807	tCc/tTc																																																																														
HGF	0	MSKCC	GRCh37	7	81386587	81386587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	36	728	1	ENST00000222390.5:c.400C>T	p.Arg134Cys	p.R134C	ENST00000222390	NM_000601.4	134	Cgc/Tgc																																																																														
ABL1	0	MSKCC	GRCh37	9	133748333	133748333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023287-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	118	873	2	ENST00000318560.5:c.994C>T	p.Arg332Trp	p.R332W	ENST00000318560	NM_005157.4	332	Cgg/Tgg																																																																														
NF2	0	MSKCC	GRCh37	22	30069462	30069462	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023309-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	15	627	0	ENST00000338641.4:c.1327G>T	p.Glu443Ter	p.E443*	ENST00000338641	NM_000268.3	443	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	44	916	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	54	960	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
ETV6	0	MSKCC	GRCh37	12	12038958	12038958	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023312-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	24	553	1	ENST00000396373.4:c.1251C>A	p.Phe417Leu	p.F417L	ENST00000396373	NM_001987.4	417	ttC/ttA																																																																														
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023315-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	33	813	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	54	949	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	33	634	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120468082	120468082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	70	891	0	ENST00000256646.2:c.4357G>A	p.Gly1453Ser	p.G1453S	ENST00000256646	NM_024408.3	1453	Ggt/Agt																																																																														
POLE	0	MSKCC	GRCh37	12	133235926	133235926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	34	749	1	ENST00000320574.5:c.3230G>T	p.Arg1077Leu	p.R1077L	ENST00000320574	NM_006231.2	1077	cGc/cTc																																																																														
MGA	0	MSKCC	GRCh37	15	42000369	42000370	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	22	646	2	ENST00000219905.7:c.2388_2389delinsTT	p.Arg796_Gly797delinsSerTer	p.R796_G797delinsS*	ENST00000219905	NM_001164273.1	796	agGGga/agTTga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66217232	66217232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	42	695	0	ENST00000273854.3:c.2383G>A	p.Gly795Ser	p.G795S	ENST00000273854	NM_004439.5	795	Ggc/Agc																																																																														
MDC1	0	MSKCC	GRCh37	6	30680017	30680017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	51	783	0	ENST00000376406.3:c.1702G>A	p.Glu568Lys	p.E568K	ENST00000376406	NM_014641.2	568	Gag/Aag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508772	106508772	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023316-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	38	720	1	ENST00000359195.3:c.766A>T	p.Lys256Ter	p.K256*	ENST00000359195	NM_002649.2	256	Aaa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	146	706	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	112	748	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	155	622	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	155	622	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971194	21971194	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	155	622	0	ENST00000304494.5:c.164del	p.Gly55AlafsTer91	p.G55Afs*91	ENST00000304494	NM_000077.4	55	gGc/gc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0023341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	49	660	2	ENST00000304494.5:c.149A>C	p.Gln50Pro	p.Q50P	ENST00000304494	NM_000077.4	50	cAg/cCg																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	103	1008	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32893456	32893456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	17	313	0	ENST00000380152.3:c.310G>A	p.Asp104Asn	p.D104N	ENST00000380152		104	Gac/Aac																																																																														
ALK	0	MSKCC	GRCh37	2	29519872	29519872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	54	792	0	ENST00000389048.3:c.1699G>C	p.Val567Leu	p.V567L	ENST00000389048	NM_004304.4	567	Gtg/Ctg																																																																														
SOX17	0	MSKCC	GRCh37	8	55371782	55371934	+	protein_altering_variant	In_Frame_Del	DEL	GGCCTGGCTGAGCCGCAGGCGGCCGCGCTGGGCCCCGAGGGCGGCCGCGTGGCCATGGACGGCCTGGGCCTCCAGTTCCCCGAGCAGGGCTTCCCCGCCGGCCCGCCGCTGCTGCCTCCGCACATGGGCGGCCACTACCGCGACTGCCAGAGT	GGCCTGGCTGAGCCGCAGGCGGCCGCGCTGGGCCCCGAGGGCGGCCGCGTGGCCATGGACGGCCTGGGCCTCCAGTTCCCCGAGCAGGGCTTCCCCGCCGGCCCGCCGCTGCTGCCTCCGCACATGGGCGGCCACTACCGCGACTGCCAGAGT	AGC			P-0023344-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	169	637	5	ENST00000297316.4:c.472_624delinsAGC	p.Gly158_Gln207del	p.G158_Q207del	ENST00000297316	NM_022454.3	158	GGCCTGGCTGAGCCGCAGGCGGCCGCGCTGGGCCCCGAGGGCGGCCGCGTGGCCATGGACGGCCTGGGCCTCCAGTTCCCCGAGCAGGGCTTCCCCGCCGGCCCGCCGCTGCTGCCTCCGCACATGGGCGGCCACTACCGCGACTGCCAGAGT/AGC																																																																														
BAP1	0	MSKCC	GRCh37	3	52436624	52436624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000332-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			666	146	698	0	ENST00000460680.1:c.2050C>T	p.Gln684Ter	p.Q684*	ENST00000460680	NM_004656.3	684	Cag/Tag																																																																														
FGFR2	0	MSKCC	GRCh37	10	123263454	123263454	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0000332-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	26	470	0	ENST00000358487.5:c.1289T>G	p.Val430Gly	p.V430G	ENST00000358487	NM_000141.4	430	gTt/gGt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40710578	40710578	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021052-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	281	677	0	ENST00000373198.4:c.4273G>C	p.Val1425Leu	p.V1425L	ENST00000373198	NM_133170.3	1425	Gtg/Ctg																																																																														
RARA	0	MSKCC	GRCh37	17	38487554	38487554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	240	589	3	ENST00000254066.5:c.89delC	p.Pro30LeufsTer12	p.P30Lfs*12	ENST00000254066	NM_000964.3	28	ttC/tt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	70	397	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	112	620	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	117	624	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	67	409	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
AKT1	0	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	62	657	0	ENST00000349310.3:c.155T>A	p.Leu52His	p.L52H	ENST00000349310	NM_001014432.1	52	cTc/cAc																																																																														
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	48	442	1	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																																																														
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	8	613	0	ENST00000326873.7:c.580G>A	p.Asp194Asn	p.D194N	ENST00000326873	NM_000455.4	194	Gac/Aac																																																																														
RHEB	0	MSKCC	GRCh37	7	151188049	151188049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	19	435	0	ENST00000262187.5:c.104A>G	p.Tyr35Cys	p.Y35C	ENST00000262187	NM_005614.3	35	tAc/tGc																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871029	12871029	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	159	364	0	ENST00000228872.4:c.256G>T	p.Glu86Ter	p.E86*	ENST00000228872	NM_004064.3	86	Gag/Tag																																																																														
AXL	0	MSKCC	GRCh37	19	41762439	41762439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	61	559	0	ENST00000301178.4:c.2119C>T	p.Arg707Cys	p.R707C	ENST00000301178	NM_021913.4	707	Cgt/Tgt																																																																														
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	19	762	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	61	730	4	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36214871	36214871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	98	697	4	ENST00000222270.7:c.3302del	p.Pro1101LeufsTer81	p.P1101Lfs*81	ENST00000222270	NM_014727.1	1099	ggC/gg																																																																														
MTOR	0	MSKCC	GRCh37	1	11174386	11174386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	47	625	0	ENST00000361445.4:c.7289G>T	p.Arg2430Met	p.R2430M	ENST00000361445	NM_004958.3	2430	aGg/aTg																																																																														
CCND1	0	MSKCC	GRCh37	11	69465976	69465976	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	83	684	1	ENST00000227507.2:c.814G>T	p.Glu272Ter	p.E272*	ENST00000227507	NM_053056.2	272	Gag/Tag																																																																														
MTOR	0	MSKCC	GRCh37	1	11186802	11186802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	73	481	0	ENST00000361445.4:c.6403G>T	p.Asp2135Tyr	p.D2135Y	ENST00000361445	NM_004958.3	2135	Gac/Tac																																																																														
SHOC2	0	MSKCC	GRCh37	10	112724496	112724496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	11	533	0	ENST00000369452.4:c.380A>G	p.Glu127Gly	p.E127G	ENST00000369452	NM_007373.3	127	gAa/gGa																																																																														
CARM1	0	MSKCC	GRCh37	19	11032290	11032290	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	82	532	0	ENST00000327064.4:c.1685-1G>T		p.X562_splice	ENST00000327064	NM_199141.1	562																																																																															
ERCC2	0	MSKCC	GRCh37	19	45868410	45868410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	25	651	0	ENST00000391945.4:c.367C>A	p.Pro123Thr	p.P123T	ENST00000391945	NM_000400.3	123	Ccc/Acc																																																																														
INHA	0	MSKCC	GRCh37	2	220439793	220439793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	84	637	0	ENST00000243786.2:c.646G>A	p.Val216Met	p.V216M	ENST00000243786	NM_002191.3	216	Gtg/Atg																																																																														
ASXL1	0	MSKCC	GRCh37	20	31023151	31023152	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	78	592	0	ENST00000375687.4:c.2637_2638del	p.Thr880Ter	p.T880*	ENST00000375687	NM_015338.5	879	gAT/g																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306592	41306592	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	51	674	0	ENST00000373198.4:c.1067A>G	p.Tyr356Cys	p.Y356C	ENST00000373198	NM_133170.3	356	tAt/tGt																																																																														
ERG	0	MSKCC	GRCh37	21	39775427	39775428	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CT	CT	-			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	53	413	0	ENST00000288319.7:c.592_592+1del		p.X198_splice	ENST00000288319	NM_182918.3	198																																																																															
PBRM1	0	MSKCC	GRCh37	3	52663028	52663028	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	59	337	0	ENST00000394830.3:c.1325A>G	p.Tyr442Cys	p.Y442C	ENST00000394830	NM_018313.4	442	tAt/tGt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916861	178916861	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	108	653	0	ENST00000263967.3:c.248T>G	p.Phe83Cys	p.F83C	ENST00000263967	NM_006218.2	83	tTt/tGt																																																																														
SOX2	0	MSKCC	GRCh37	3	181430692	181430692	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	55	577	0	ENST00000325404.1:c.544C>T	p.Gln182Ter	p.Q182*	ENST00000325404	NM_003106.3	182	Cag/Tag																																																																														
RAD50	0	MSKCC	GRCh37	5	131924558	131924558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	91	448	2	ENST00000265335.6:c.1231G>A	p.Ala411Thr	p.A411T	ENST00000265335		411	Gcc/Acc																																																																														
CCND3	0	MSKCC	GRCh37	6	41903706	41903706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	85	618	0	ENST00000372991.4:c.851C>A	p.Pro284His	p.P284H	ENST00000372991	NM_001760.3	284	cCt/cAt																																																																														
RXRA	0	MSKCC	GRCh37	9	137293604	137293604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	30	725	1	ENST00000481739.1:c.155G>A	p.Ser52Asn	p.S52N	ENST00000481739	NM_002957.4	52	aGc/aAc																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20152120	20152120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	22	436	0	ENST00000379607.5:c.210G>C	p.Trp70Cys	p.W70C	ENST00000379607	NM_001412.3	70	tgG/tgC																																																																														
STAG2	0	MSKCC	GRCh37	X	123159767	123159767	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	15	372	0	ENST00000218089.9:c.122A>C	p.Lys41Thr	p.K41T	ENST00000218089	NM_001042749.1	41	aAa/aCa																																																																														
ALK	0	MSKCC	GRCh37	2	29416482	29416482	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023250-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	12	672	0	ENST00000389048.3:c.4471A>G	p.Lys1491Glu	p.K1491E	ENST00000389048	NM_004304.4	1491	Aag/Gag																																																																														
KRAS	0	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	93	528	1	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																																																														
STK11	0	MSKCC	GRCh37	19	1207096	1207096	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	156	758	0	ENST00000326873.7:c.184A>T	p.Lys62Ter	p.K62*	ENST00000326873	NM_000455.4	62	Aag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610288	10610288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	166	802	0	ENST00000171111.5:c.422A>G	p.Tyr141Cys	p.Y141C	ENST00000171111	NM_203500.1	141	tAc/tGc																																																																														
BRD4	0	MSKCC	GRCh37	19	15355333	15355333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	91	426	0	ENST00000263377.2:c.2290C>T	p.Pro764Ser	p.P764S	ENST00000263377	NM_058243.2	764	Ccc/Tcc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32172059	32172059	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	148	744	0	ENST00000375023.3:c.2973C>G	p.His991Gln	p.H991Q	ENST00000375023	NM_004557.3	991	caC/caG																																																																														
PIM1	0	MSKCC	GRCh37	6	37140827	37140827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	119	599	0	ENST00000373509.5:c.663G>T	p.Arg221Ser	p.R221S	ENST00000373509	NM_002648.3	221	agG/agT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	41	670	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	152	546	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	343	794	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804322	46804322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	76	722	4	ENST00000290295.7:c.685C>T	p.Arg229Trp	p.R229W	ENST00000290295	NM_006361.5	229	Cgg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16257290	16257290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	59	785	0	ENST00000375759.3:c.4555G>C	p.Glu1519Gln	p.E1519Q	ENST00000375759	NM_015001.2	1519	Gag/Cag																																																																														
SPEN	0	MSKCC	GRCh37	1	16257344	16257344	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	51	779	0	ENST00000375759.3:c.4609G>C	p.Glu1537Gln	p.E1537Q	ENST00000375759	NM_015001.2	1537	Gaa/Caa																																																																														
RIT1	0	MSKCC	GRCh37	1	155874166	155874166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	82	769	1	ENST00000368323.3:c.365G>A	p.Arg122Gln	p.R122Q	ENST00000368323	NM_006912.5	122	cGa/cAa																																																																														
FH	0	MSKCC	GRCh37	1	241682949	241682960	+	inframe_deletion	In_Frame_Del	DEL	GCCGAAGCTAAG	GCCGAAGCTAAG	-			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	123	573	0	ENST00000366560.3:c.63_74del	p.Leu22_Ala25del	p.L22_A25del	ENST00000366560	NM_000143.3	21	gcCTTAGCTTCGGCt/gct																																																																														
TET1	0	MSKCC	GRCh37	10	70450706	70450706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	56	637	0	ENST00000373644.4:c.5546C>A	p.Ser1849Tyr	p.S1849Y	ENST00000373644	NM_030625.2	1849	tCc/tAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436647	49436647	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	200	642	0	ENST00000301067.7:c.5659G>T	p.Glu1887Ter	p.E1887*	ENST00000301067	NM_003482.3	1887	Gaa/Taa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495387	56495387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	328	778	0	ENST00000267101.3:c.3577G>A	p.Glu1193Lys	p.E1193K	ENST00000267101	NM_001982.3	1193	Gaa/Aaa																																																																														
HNF1A	0	MSKCC	GRCh37	12	121438901	121438901	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1332	77	926	0	ENST00000257555.6:c.1802C>G	p.Ser601Ter	p.S601*	ENST00000257555		601	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577572	7577573	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	390	726	0	ENST00000269305.4:c.708_709insCC	p.Met237ProfsTer11	p.M237Pfs*11	ENST00000269305	NM_001126112.2	236	-/CC																																																																														
CIC	0	MSKCC	GRCh37	19	42797300	42797300	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	70	858	0	ENST00000575354.2:c.3662C>G	p.Ser1221Cys	p.S1221C	ENST00000575354	NM_015125.3	1221	tCt/tGt																																																																														
GATA2	0	MSKCC	GRCh37	3	128200774	128200774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	58	648	0	ENST00000341105.2:c.1031G>C	p.Arg344Thr	p.R344T	ENST00000341105	NM_032638.4	344	aGa/aCa																																																																														
FAT1	0	MSKCC	GRCh37	4	187541112	187541112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	46	487	0	ENST00000441802.2:c.6628G>A	p.Glu2210Lys	p.E2210K	ENST00000441802	NM_005245.3	2210	Gaa/Aaa																																																																														
MSH3	0	MSKCC	GRCh37	5	80024675	80024675	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	42	573	0	ENST00000265081.6:c.1459C>G	p.Gln487Glu	p.Q487E	ENST00000265081	NM_002439.4	487	Caa/Gaa																																																																														
EGFR	0	MSKCC	GRCh37	7	55211125	55211125	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	51	626	0	ENST00000275493.2:c.368C>G	p.Ser123Cys	p.S123C	ENST00000275493	NM_005228.3	123	tCt/tGt																																																																														
CDK6	0	MSKCC	GRCh37	7	92355059	92355059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023261-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	169	448	1	ENST00000265734.4:c.418C>T	p.Arg140Ter	p.R140*	ENST00000265734	NM_001259.6	140	Cga/Tga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0023263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	82	490	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870948	12870948	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	27	401	0	ENST00000228872.4:c.176del	p.Lys59SerfsTer12	p.K59Sfs*12	ENST00000228872	NM_004064.3	59	Aag/ag																																																																														
ASXL2	0	MSKCC	GRCh37	2	26029178	26029191	+	frameshift_variant	Frame_Shift_Del	DEL	CATTCAGGCATGCA	CATTCAGGCATGCA	-			P-0023263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	113	503	0	ENST00000435504.4:c.159_172del	p.Ala54AsnfsTer9	p.A54Nfs*9	ENST00000435504		53	ctTGCATGCCTGAATGca/ctca																																																																														
PREX2	0	MSKCC	GRCh37	8	69046400	69046400	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023263-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	136	634	0	ENST00000288368.4:c.3873C>A	p.Asp1291Glu	p.D1291E	ENST00000288368	NM_024870.2	1291	gaC/gaA																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149501461	149501461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	200	556	0	ENST00000261799.4:c.2326G>A	p.Asp776Asn	p.D776N	ENST00000261799	NM_002609.3	776	Gat/Aat																																																																														
CDH1	0	MSKCC	GRCh37	16	68856050	68856050	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	280	635	0	ENST00000261769.5:c.1859delC	p.Pro620LeufsTer11	p.P620Lfs*11	ENST00000261769	NM_004360.3	620	Cct/ct																																																																														
YAP1	0	MSKCC	GRCh37	11	101984980	101984981	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	106	268	0	ENST00000282441.5:c.432dup	p.Thr145HisfsTer22	p.T145Hfs*22	ENST00000282441	NM_001130145.2	143	acc/aCcc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18658365	18658375	+	protein_altering_variant	In_Frame_Del	DEL	GTCATGCACAA	GTCATGCACAA	TC			P-0023264-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	184	481	2	ENST00000266497.5:c.3170_3180delinsTC	p.Gly1057_Gln1060delinsVal	p.G1057_Q1060delinsV	ENST00000266497		1057	gGTCATGCACAA/gTC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	24	527	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	34	447	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	62	540	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	47	431	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	33	467	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	45	381	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	55	627	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa																																																																														
ATRX	0	MSKCC	GRCh37	X	76940000	76940000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	84	599	1	ENST00000373344.5:c.748C>T	p.Arg250Ter	p.R250*	ENST00000373344	NM_000489.3	250	Cga/Tga																																																																														
ERBB4	0	MSKCC	GRCh37	2	212285326	212285326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	29	449	0	ENST00000342788.4:c.2975G>A	p.Arg992His	p.R992H	ENST00000342788	NM_005235.2	992	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0023269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	75	792	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	30	839	1	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424990	49424990	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	68	774	2	ENST00000301067.7:c.13498C>T	p.Gln4500Ter	p.Q4500*	ENST00000301067	NM_003482.3	4500	Cag/Tag																																																																														
MED12	0	MSKCC	GRCh37	X	70346230	70346230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023269-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	41	873	0	ENST00000374080.3:c.2581C>A	p.Leu861Ile	p.L861I	ENST00000374080		861	Ctt/Att																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432011	49432011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	43	898	0	ENST00000301067.7:c.9128A>G	p.Asn3043Ser	p.N3043S	ENST00000301067	NM_003482.3	3043	aAt/aGt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2213616	2213616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	92	830	0	ENST00000398665.3:c.1636C>G	p.Leu546Val	p.L546V	ENST00000398665	NM_032482.2	546	Ctg/Gtg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0023300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	77	472	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
GATA3	0	MSKCC	GRCh37	10	8115947	8115954	+	frameshift_variant	Frame_Shift_Del	DEL	ACCACACC	ACCACACC	-			P-0023300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	42	537	0	ENST00000346208.3:c.1296_1303del	p.His433LeufsTer71	p.H433Lfs*71	ENST00000346208		431	ggACCACACCac/ggac																																																																														
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0023319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	143	1087	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416536	49416536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	98	905	1	ENST00000301067.7:c.16175G>A	p.Arg5392His	p.R5392H	ENST00000301067	NM_003482.3	5392	cGc/cAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	57	397	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	78	597	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT																																																																														
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	46	280	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	169	935	1	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
H3F3C	0	MSKCC	GRCh37	12	31944878	31944878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141415515		P-0023187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	30	586	1	ENST00000340398.3:c.223G>A	p.Ala75Thr	p.A75T	ENST00000340398	NM_001013699.2	75	Gcg/Acg																																																																														
SDHA	0	MSKCC	GRCh37	5	228366	228366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	47	599	0	ENST00000264932.6:c.688G>A	p.Glu230Lys	p.E230K	ENST00000264932	NM_004168.2	230	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0023302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	151	983	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	89	681	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	152	686	0				ENST00000310581	NM_198253.2																																																																																
AKT1	0	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	239	941	0	ENST00000349310.3:c.155T>G	p.Leu52Arg	p.L52R	ENST00000349310	NM_001014432.1	52	cTc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023184-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	12	701	0	ENST00000269305.4:c.559G>A	p.Gly187Ser	p.G187S	ENST00000269305	NM_001126112.2	187	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	69	744	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0023198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	104	921	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577075	7577075	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	181	950	0	ENST00000269305.4:c.863delA	p.Asn288IlefsTer57	p.N288Ifs*57	ENST00000269305	NM_001126112.2	288	aAt/at																																																																														
NTRK1	0	MSKCC	GRCh37	1	156846275	156846275	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	34	918	1	ENST00000524377.1:c.1716C>G	p.Ile572Met	p.I572M	ENST00000524377	NM_002529.3	572	atC/atG																																																																														
POLE	0	MSKCC	GRCh37	12	133225656	133225656	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0023198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	33	667	0	ENST00000320574.5:c.4008C>G	p.Ile1336Met	p.I1336M	ENST00000320574	NM_006231.2	1336	atC/atG																																																																														
DICER1	0	MSKCC	GRCh37	14	95570407	95570407	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	36	400	0	ENST00000343455.3:c.3326C>G	p.Ser1109Ter	p.S1109*	ENST00000343455	NM_177438.2	1109	tCa/tGa																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43708595	43708595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	47	647	1	ENST00000382044.4:c.4701G>T	p.Arg1567Ser	p.R1567S	ENST00000382044	NM_001141980.1	1567	agG/agT																																																																														
RTEL1	0	MSKCC	GRCh37	20	62326765	62326765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023198-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	141	1058	2	ENST00000508582.2:c.3656C>T	p.Ala1219Val	p.A1219V	ENST00000508582		1219	gCg/gTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088734	27088735	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0023202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	68	723	0	ENST00000324856.7:c.2348_2349del	p.Thr783ArgfsTer33	p.T783Rfs*33	ENST00000324856	NM_006015.4	781	atACac/atac																																																																														
MAX	0	MSKCC	GRCh37	14	65569039	65569039	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	220	525	0	ENST00000358664.4:c.19del	p.Ile7SerfsTer58	p.I7Sfs*58	ENST00000358664	NM_002382.4	7	Atc/tc																																																																														
EP300	0	MSKCC	GRCh37	22	41545864	41545864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	85	823	0	ENST00000263253.7:c.2479C>T	p.Leu827Phe	p.L827F	ENST00000263253	NM_001429.3	827	Ctt/Ttt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	27	689	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057751	27057751	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1158	371	1177	0	ENST00000324856.7:c.1459C>T	p.Gln487Ter	p.Q487*	ENST00000324856	NM_006015.4	487	Cag/Tag																																																																														
MEN1	0	MSKCC	GRCh37	11	64575082	64575083	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0023196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	224	825	0	ENST00000337652.1:c.739_740delinsTT	p.Ala247Phe	p.A247F	ENST00000337652	NM_130803.2	247	GCc/TTc																																																																														
FAT1	0	MSKCC	GRCh37	4	187532888	187532888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	58	545	0	ENST00000441802.2:c.9505G>T	p.Asp3169Tyr	p.D3169Y	ENST00000441802	NM_005245.3	3169	Gat/Tat																																																																														
FH	0	MSKCC	GRCh37	1	241671911	241671911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	29	518	0	ENST00000366560.3:c.730C>T	p.Leu244Phe	p.L244F	ENST00000366560	NM_000143.3	244	Ctt/Ttt																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473636	67473636	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	127	677	0	ENST00000327367.4:c.716A>T	p.Glu239Val	p.E239V	ENST00000327367	NM_005902.3	239	gAg/gTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3900396	3900396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	85	627	0	ENST00000262367.5:c.700G>A	p.Ala234Thr	p.A234T	ENST00000262367	NM_004380.2	234	Gcc/Acc																																																																														
EGFR	0	MSKCC	GRCh37	7	55242468	55242485	+	protein_altering_variant	In_Frame_Del	DEL	ATTAAGAGAAGCAACATC	ATTAAGAGAAGCAACATC	GCAACA			P-0023206-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	77	544	2	ENST00000275493.2:c.2238_2255delinsGCAACA	p.Leu747_Ser752delinsGlnHis	p.L747_S752delinsQH	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACATCt/gaGCAACAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	105	707	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	47	914	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	63	832	2	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9916121	9916121	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	20	489	0	ENST00000330684.3:c.2168G>T	p.Gly723Val	p.G723V	ENST00000330684	NM_001134407.1	723	gGg/gTg																																																																														
FGF19	0	MSKCC	GRCh37	11	69518419	69518419	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	19	169	1	ENST00000294312.3:c.226G>T	p.Ala76Ser	p.A76S	ENST00000294312	NM_005117.2	76	Gcg/Tcg																																																																														
KDM5A	0	MSKCC	GRCh37	12	394665	394665	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	40	733	0	ENST00000399788.2:c.5030T>G	p.Met1677Arg	p.M1677R	ENST00000399788	NM_001042603.1	1677	aTg/aGg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032133	10032133	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	46	714	1	ENST00000330684.3:c.690C>A	p.Tyr230Ter	p.Y230*	ENST00000330684	NM_001134407.1	230	taC/taA																																																																														
PBRM1	0	MSKCC	GRCh37	3	52621424	52621425	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	78	714	1	ENST00000394830.3:c.2992_2993insC	p.Tyr998SerfsTer7	p.Y998Sfs*7	ENST00000394830	NM_018313.4	998	tac/tCac																																																																														
FAT1	0	MSKCC	GRCh37	4	187539950	187539950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	40	496	0	ENST00000441802.2:c.7790G>T	p.Arg2597Leu	p.R2597L	ENST00000441802	NM_005245.3	2597	cGa/cTa																																																																														
PARK2	0	MSKCC	GRCh37	6	162864442	162864442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	49	601	0	ENST00000366898.1:c.71del	p.Phe24SerfsTer20	p.F24Sfs*20	ENST00000366898	NM_004562.2	24	tTc/tc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49448338	49448338	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	97	859	0	ENST00000301067.7:c.373A>T	p.Thr125Ser	p.T125S	ENST00000301067	NM_003482.3	125	Aca/Tca																																																																														
PTPRT	0	MSKCC	GRCh37	20	41076905	41076905	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	93	783	0	ENST00000373198.4:c.1515G>C	p.Gln505His	p.Q505H	ENST00000373198	NM_133170.3	505	caG/caC																																																																														
EPHA7	0	MSKCC	GRCh37	6	93955053	93955053	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	29	431	2	ENST00000369303.4:c.2845T>A	p.Tyr949Asn	p.Y949N	ENST00000369303	NM_004440.3	949	Tac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	135	756	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	126	803	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg																																																																														
U2AF1	0	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	99	394	0	ENST00000291552.4:c.101C>A	p.Ser34Tyr	p.S34Y	ENST00000291552	NM_006758.2	34	tCt/tAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			344	337	535	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577506	7577507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	312	893	0	ENST00000269305.4:c.774dup	p.Asp259ArgfsTer5	p.D259Rfs*5	ENST00000269305	NM_001126112.2	258	-/A																																																																														
FAT1	2195	MSKCC	GRCh37	4	187522476	187522476	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	258	953	0	ENST00000441802.2:c.11587T>C	p.Ser3863Pro	p.S3863P	ENST00000441802	NM_005245.3	3863	Tcc/Ccc																																																																														
MGA	0	MSKCC	GRCh37	15	42058738	42058738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	15	345	0	ENST00000219905.7:c.8458G>T	p.Asp2820Tyr	p.D2820Y	ENST00000219905	NM_001164273.1	2820	Gat/Tat																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945382	151945382	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008931-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	172	473	0	ENST00000262189.6:c.2137del	p.Glu713AsnfsTer5	p.E713Nfs*5	ENST00000262189	NM_170606.2	713	Gaa/aa																																																																														
STK11	0	MSKCC	GRCh37	19	1220703	1220703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			287	229	774	0	ENST00000326873.7:c.721G>C	p.Ala241Pro	p.A241P	ENST00000326873	NM_000455.4	241	Gct/Cct																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			375	148	713	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281634	15281634	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			625	135	904	2	ENST00000263388.2:c.4739C>T	p.Ser1580Leu	p.S1580L	ENST00000263388	NM_000435.2	1580	tCg/tTg																																																																														
TSC1	0	MSKCC	GRCh37	9	135787846	135787846	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			268	59	360	0	ENST00000298552.3:c.738-2A>T		p.X246_splice	ENST00000298552	NM_001162426.1	246																																																																															
ESR1	0	MSKCC	GRCh37	6	152201851	152201851	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			281	79	520	0	ENST00000206249.3:c.705G>C	p.Lys235Asn	p.K235N	ENST00000206249	NM_000125.3	235	aaG/aaC																																																																														
BTK	0	MSKCC	GRCh37	X	100612503	100612503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			316	189	566	0	ENST00000308731.7:c.1171G>T	p.Gly391Ter	p.G391*	ENST00000308731	NM_000061.2	391	Gga/Tga																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344287	118344287	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			311	59	437	0	ENST00000534358.1:c.2413C>G	p.Gln805Glu	p.Q805E	ENST00000534358	NM_005933.3	805	Cag/Gag																																																																														
PRKD1	0	MSKCC	GRCh37	14	30194820	30194820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			500	114	774	0	ENST00000331968.5:c.325A>G	p.Thr109Ala	p.T109A	ENST00000331968	NM_002742.2	109	Acc/Gcc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610478	10610478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			308	116	803	0	ENST00000171111.5:c.232G>A	p.Asp78Asn	p.D78N	ENST00000171111	NM_203500.1	78	Gac/Aac																																																																														
SETD2	0	MSKCC	GRCh37	3	47158246	47158246	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			277	73	426	0	ENST00000409792.3:c.4455-2A>T		p.X1485_splice	ENST00000409792	NM_014159.6	1485																																																																															
PPP4R2	0	MSKCC	GRCh37	3	73113215	73113215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			126	44	133	0	ENST00000356692.5:c.556G>T	p.Ala186Ser	p.A186S	ENST00000356692		186	Gcc/Tcc																																																																														
TP63	0	MSKCC	GRCh37	3	189604284	189604284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			433	107	545	0	ENST00000264731.3:c.1451C>T	p.Pro484Leu	p.P484L	ENST00000264731	NM_003722.4	484	cCt/cTt																																																																														
TET2	0	MSKCC	GRCh37	4	106156727	106156727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			291	76	416	2	ENST00000380013.4:c.1628G>T	p.Gly543Val	p.G543V	ENST00000380013	NM_001127208.2	543	gGt/gTt																																																																														
ESR1	0	MSKCC	GRCh37	6	152265395	152265395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			318	94	495	0	ENST00000206249.3:c.848C>A	p.Ala283Asp	p.A283D	ENST00000206249	NM_000125.3	283	gCt/gAt																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38146052	38146052	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0019252-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			410	145	834	0	ENST00000317025.8:c.3454A>G	p.Thr1152Ala	p.T1152A	ENST00000317025	NM_023034.1	1152	Acg/Gcg																																																																														
WT1	0	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	44	689	0	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																																																														
MGA	0	MSKCC	GRCh37	15	41961492	41961492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	52	678	1	ENST00000219905.7:c.400C>T	p.Arg134Cys	p.R134C	ENST00000219905	NM_001164273.1	134	Cgt/Tgt																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740468	58740468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023209-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	43	644	0	ENST00000305921.3:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000305921	NM_003620.3	458	cGa/cAa																																																																														
ARAF	0	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	370	932	0	ENST00000377045.4:c.641C>T	p.Ser214Phe	p.S214F	ENST00000377045	NM_001654.4	214	tCc/tTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	42	610	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
CIC	0	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	45	961	7	ENST00000575354.2:c.3347dupC	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106626	27106626	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	49	700	1	ENST00000324856.7:c.6237del	p.Ser2079ArgfsTer56	p.S2079Rfs*56	ENST00000324856	NM_006015.4	2079	agC/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7579539	7579540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0023211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	17	851	0	ENST00000269305.4:c.147_148insCA	p.Ile50GlnfsTer74	p.I50Qfs*74	ENST00000269305	NM_001126112.2	49	-/CA																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591821	48591821	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	36	539	0	ENST00000342988.3:c.984C>A	p.Tyr328Ter	p.Y328*	ENST00000342988	NM_005359.5	328	taC/taA																																																																														
LATS1	0	MSKCC	GRCh37	6	150005681	150005681	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023211-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	24	357	0	ENST00000253339.5:c.544A>T	p.Lys182Ter	p.K182*	ENST00000253339		182	Aaa/Taa																																																																														
FLT4	0	MSKCC	GRCh37	5	180057744	180057744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138831198		P-0023318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	182	767	1	ENST00000261937.6:c.211G>A	p.Gly71Arg	p.G71R	ENST00000261937	NM_182925.4	71	Gga/Aga																																																																														
JAK1	0	MSKCC	GRCh37	1	65303755	65303755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	137	704	0	ENST00000342505.4:c.3000del	p.His1001ThrfsTer17	p.H1001Tfs*17	ENST00000342505	NM_002227.2	1000	gtT/gt																																																																														
BIRC3	0	MSKCC	GRCh37	11	102207682	102207682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	94	524	0	ENST00000263464.3:c.1664G>T	p.Arg555Ile	p.R555I	ENST00000263464	NM_001165.4	555	aGa/aTa																																																																														
RPTOR	0	MSKCC	GRCh37	17	78796979	78796980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTCA			P-0023318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	128	756	0	ENST00000306801.3:c.1094_1097dup	p.Ser367GlnfsTer22	p.S367Qfs*22	ENST00000306801	NM_020761.2	364	-/GTCA																																																																														
RYBP	0	MSKCC	GRCh37	3	72495646	72495646	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0023318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	112	503	0	ENST00000477973.2:c.423+1del		p.X141_splice	ENST00000477973	NM_012234.5	141																																																																															
STAG2	0	MSKCC	GRCh37	X	123185061	123185061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023318-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	9	393	0	ENST00000218089.9:c.1108C>G	p.Arg370Gly	p.R370G	ENST00000218089	NM_001042749.1	370	Cgg/Ggg																																																																														
ATM	0	MSKCC	GRCh37	11	108173715	108173716	+	missense_variant	Missense_Mutation	DNP	AC	AC	CA			P-0023321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	183	873	0	ENST00000278616.4:c.5455_5456delinsCA	p.Thr1819Gln	p.T1819Q	ENST00000278616	NM_000051.3	1819	ACa/CAa																																																																														
ARID2	0	MSKCC	GRCh37	12	46215243	46215264	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGAAGACTGATAGAGACTTC	AGAGAAGACTGATAGAGACTTC	-			P-0023321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	49	659	0	ENST00000334344.6:c.678_699del	p.Glu227LeufsTer58	p.E227Lfs*58	ENST00000334344	NM_152641.2	226	aaAGAGAAGACTGATAGAGACTTC/aa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061540	38061540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	162	472	0	ENST00000250448.2:c.449G>A	p.Arg150His	p.R150H	ENST00000250448	NM_004496.3	150	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	510	985	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178096381	178096381	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	167	864	0	ENST00000397062.3:c.950T>G	p.Ile317Ser	p.I317S	ENST00000397062	NM_006164.4	317	aTt/aGt																																																																														
VEGFA	0	MSKCC	GRCh37	6	43748554	43748554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	227	782	0	ENST00000523873.1:c.508C>G	p.Arg170Gly	p.R170G	ENST00000523873		170	Cgc/Ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022004-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	366	626	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432144	49432144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022004-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			779	149	806	0	ENST00000301067.7:c.8995G>A	p.Ala2999Thr	p.A2999T	ENST00000301067	NM_003482.3	2999	Gcc/Acc																																																																														
LATS2	0	MSKCC	GRCh37	13	21563015	21563070	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCGGCGCCTGGCGGTCCTCCCTGGCCCTTCGTGGGCAGGCTGGCGTAACCCCCG	GGCCGGCGCCTGGCGGTCCTCCCTGGCCCTTCGTGGGCAGGCTGGCGTAACCCCCG	-			P-0022004-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			766	127	716	0	ENST00000382592.4:c.849_904del	p.Gly284ArgfsTer59	p.G284Rfs*59	ENST00000382592	NM_014572.2	283	acCGGGGGTTACGCCAGCCTGCCCACGAAGGGCCAGGGAGGACCGCCAGGCGCCGGCCtc/actc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78796978	78796978	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022004-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			795	96	557	0	ENST00000306801.3:c.1091C>G	p.Pro364Arg	p.P364R	ENST00000306801	NM_020761.2	364	cCc/cGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	65	735	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118375003	118375004	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0023188-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	148	470	0	ENST00000534358.1:c.8396_8397del	p.Ser2799PhefsTer29	p.S2799Ffs*29	ENST00000534358	NM_005933.3	2799	tCC/t																																																																														
TBX3	0	MSKCC	GRCh37	12	115112182	115112182	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	27	814	0	ENST00000257566.3:c.1558del	p.Leu520CysfsTer112	p.L520Cfs*112	ENST00000257566	NM_016569.3	520	Ctg/tg																																																																														
MAPK3	0	MSKCC	GRCh37	16	30134479	30134479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	52	558	0	ENST00000263025.4:c.52G>A	p.Glu18Lys	p.E18K	ENST00000263025	NM_002746.2	18	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68847244	68847245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	58	690	0	ENST00000261769.5:c.1167dup	p.Asn390Ter	p.N390*	ENST00000261769	NM_004360.3	389	gct/gcTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023193-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	53	415	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	23	865	6	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt																																																																														
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	91	721	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																																																														
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	114	725	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
ALK	0	MSKCC	GRCh37	2	29446207	29446207	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0023219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	43	446	0	ENST00000389048.3:c.3359+1G>T		p.X1120_splice	ENST00000389048	NM_004304.4	1120																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	207	710	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
STK11	0	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	400	835	1	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																																																														
MGA	0	MSKCC	GRCh37	15	42040903	42040903	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	177	711	1	ENST00000219905.7:c.5281C>T	p.Arg1761Ter	p.R1761*	ENST00000219905	NM_001164273.1	1761	Cga/Tga																																																																														
ARID2	0	MSKCC	GRCh37	12	46245582	46245582	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	132	419	0	ENST00000334344.6:c.3676G>T	p.Gly1226Ter	p.G1226*	ENST00000334344	NM_152641.2	1226	Gga/Tga																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89335043	89335043	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	53	342	0	ENST00000301030.4:c.7835A>G	p.Glu2612Gly	p.E2612G	ENST00000301030	NM_001256183.1	2612	gAg/gGg																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713574	30713574	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	110	537	0	ENST00000359013.4:c.974A>C	p.Lys325Thr	p.K325T	ENST00000359013	NM_001024847.2	325	aAg/aCg																																																																														
FGFR4	0	MSKCC	GRCh37	5	176523645	176523645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	119	838	0	ENST00000292408.4:c.2056G>T	p.Gly686Trp	p.G686W	ENST00000292408	NM_213647.1	686	Ggg/Tgg																																																																														
PPP6C	0	MSKCC	GRCh37	9	127933445	127933445	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	146	641	0	ENST00000373547.4:c.90C>A	p.Tyr30Ter	p.Y30*	ENST00000373547	NM_002721.4	30	taC/taA																																																																														
ARAF	0	MSKCC	GRCh37	X	47426704	47426704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	44	765	1	ENST00000377045.4:c.949G>T	p.Gly317Trp	p.G317W	ENST00000377045	NM_001654.4	317	Ggg/Tgg																																																																														
ARAF	0	MSKCC	GRCh37	X	47426710	47426710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	44	748	2	ENST00000377045.4:c.955G>T	p.Gly319Cys	p.G319C	ENST00000377045	NM_001654.4	319	Ggc/Tgc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0011038-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			485	439	571	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44879961	44879961	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011038-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	66	252	0	ENST00000377967.4:c.550G>C	p.Glu184Gln	p.E184Q	ENST00000377967	NM_021140.2	184	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011038-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			601	215	689	0	ENST00000269305.4:c.440T>G	p.Val147Gly	p.V147G	ENST00000269305	NM_001126112.2	147	gTt/gGt																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950442	38950442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011038-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1077	65	426	0	ENST00000357387.3:c.3508G>C	p.Glu1170Gln	p.E1170Q	ENST00000357387	NM_152756.3	1170	Gaa/Caa																																																																														
PREX2	0	MSKCC	GRCh37	8	69050687	69050687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011038-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			671	82	531	0	ENST00000288368.4:c.4022C>A	p.Ala1341Glu	p.A1341E	ENST00000288368	NM_024870.2	1341	gCa/gAa																																																																														
PRDM14	0	MSKCC	GRCh37	8	70981578	70981578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011038-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	100	747	0	ENST00000276594.2:c.518C>T	p.Ser173Leu	p.S173L	ENST00000276594	NM_024504.3	173	tCa/tTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578391	7578393	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0022856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			173	170	561	1	ENST00000269305.4:c.537_539del	p.His179_Glu180delinsGln	p.H179_E180delinsQ	ENST00000269305	NM_001126112.2	179	caTGAg/cag																																																																														
BCOR	0	MSKCC	GRCh37	X	39931652	39931652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022856-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			370	217	663	0	ENST00000378444.4:c.2947G>T	p.Glu983Ter	p.E983*	ENST00000378444	NM_001123385.1	983	Gaa/Taa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	72	749	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	68	859	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
SOX2	0	MSKCC	GRCh37	3	181430245	181430245	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	53	483	0	ENST00000325404.1:c.97A>C	p.Asn33His	p.N33H	ENST00000325404	NM_003106.3	33	Aac/Cac																																																																														
RBM10	0	MSKCC	GRCh37	X	47039904	47039904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	63	420	0	ENST00000329236.7:c.1013A>T	p.Gln338Leu	p.Q338L	ENST00000329236	NM_001204466.1	338	cAg/cTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845234	151845234	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199858308		P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	87	578	0	ENST00000262189.6:c.13778A>G	p.Asn4593Ser	p.N4593S	ENST00000262189	NM_170606.2	4593	aAt/aGt																																																																														
TET1	0	MSKCC	GRCh37	10	70405285	70405285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	46	653	0	ENST00000373644.4:c.2799C>G	p.Ile933Met	p.I933M	ENST00000373644	NM_030625.2	933	atC/atG																																																																														
SLX4	0	MSKCC	GRCh37	16	3639647	3639647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	136	1071	1	ENST00000294008.3:c.3992G>T	p.Gly1331Val	p.G1331V	ENST00000294008	NM_032444.2	1331	gGa/gTa																																																																														
NF1	0	MSKCC	GRCh37	17	29552152	29552152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	37	405	0	ENST00000358273.4:c.1885G>T	p.Gly629Trp	p.G629W	ENST00000358273	NM_001042492.2	629	Ggg/Tgg																																																																														
PAK7	0	MSKCC	GRCh37	20	9546618	9546620	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	TT			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	70	711	1	ENST00000353224.5:c.1402_1404delinsAA	p.Glu468LysfsTer10	p.E468Kfs*10	ENST00000353224	NM_177990.2	468	GAG/AA																																																																														
INPP4B	0	MSKCC	GRCh37	4	143081681	143081681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	66	422	0	ENST00000262992.4:c.1393C>A	p.Leu465Ile	p.L465I	ENST00000262992	NM_001101669.1	465	Ctt/Att																																																																														
NBN	0	MSKCC	GRCh37	8	90983481	90983481	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	26	555	0	ENST00000265433.3:c.622A>C	p.Lys208Gln	p.K208Q	ENST00000265433	NM_002485.4	208	Aaa/Caa																																																																														
RXRA	0	MSKCC	GRCh37	9	137300086	137300086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199797293		P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	70	914	0	ENST00000481739.1:c.371C>T	p.Ser124Leu	p.S124L	ENST00000481739	NM_002957.4	124	tCa/tTa																																																																														
ARAF	0	MSKCC	GRCh37	X	47430386	47430386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	49	397	0	ENST00000377045.4:c.1661G>T	p.Arg554Leu	p.R554L	ENST00000377045	NM_001654.4	554	cGg/cTg																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	48	474	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	211	566	1	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	100	567	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
TET2	0	MSKCC	GRCh37	4	106158447	106158447	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	58	342	0	ENST00000380013.4:c.3353del	p.Asn1118IlefsTer19	p.N1118Ifs*19	ENST00000380013	NM_001127208.2	1116	atA/at																																																																														
RB1	0	MSKCC	GRCh37	13	48878061	48878062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	343	289	0	ENST00000267163.4:c.19dup	p.Arg7ProfsTer24	p.R7Pfs*24	ENST00000267163	NM_000321.2	5	acc/aCcc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	124	250	6	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	392	684	4	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs752580104		P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	97	491	19	ENST00000359013.4:c.458del	p.Lys153SerfsTer35	p.K153Sfs*35	ENST00000359013	NM_001024847.2	150	gAa/ga																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024636	31024637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	266	613	0	ENST00000375687.4:c.4127dup	p.Pro1377SerfsTer3	p.P1377Sfs*3	ENST00000375687	NM_015338.5	1374	gtg/gtGg																																																																														
FANCA	0	MSKCC	GRCh37	16	89857867	89857867	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148473140		P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	387	761	0	ENST00000389301.3:c.1303C>T	p.Arg435Cys	p.R435C	ENST00000389301	NM_000135.2	435	Cgc/Tgc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	171	785	4	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
TSHR	0	MSKCC	GRCh37	14	81609331	81609331	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139286618		P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	31	360	2	ENST00000298171.2:c.929G>A	p.Arg310His	p.R310H	ENST00000298171	NM_000369.2	310	cGc/cAc																																																																														
RASA1	0	MSKCC	GRCh37	5	86564667	86564667	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	352	721	1	ENST00000274376.6:c.402del	p.Pro136LeufsTer38	p.P136Lfs*38	ENST00000274376	NM_002890.2	133	ggT/gg																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073803	8073804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	76	335	0	ENST00000377482.5:c.855dupC	p.Arg286GlnfsTer7	p.R286Qfs*7	ENST00000377482	NM_018948.3	285	-/C																																																																														
MDM4	0	MSKCC	GRCh37	1	204518503	204518503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	131	366	0	ENST00000367182.3:c.1166G>A	p.Cys389Tyr	p.C389Y	ENST00000367182	NM_001278516.1	389	tGc/tAc																																																																														
SESN3	0	MSKCC	GRCh37	11	94911882	94911882	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	233	709	0	ENST00000536441.1:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000536441	NM_144665.3	350	Cga/Tga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49435156	49435156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	237	467	0	ENST00000301067.7:c.6397del	p.Ala2133ProfsTer11	p.A2133Pfs*11	ENST00000301067	NM_003482.3	2133	Gcc/cc																																																																														
GLI1	0	MSKCC	GRCh37	12	57860152	57860152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	166	668	0	ENST00000228682.2:c.892G>A	p.Glu298Lys	p.E298K	ENST00000228682	NM_005269.2	298	Gag/Aag																																																																														
CBFB	0	MSKCC	GRCh37	16	67070578	67070578	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	61	381	0	ENST00000412916.2:c.207del	p.Pro70ArgfsTer19	p.P70Rfs*19	ENST00000412916		68	Ttt/tt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830309	72830309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	152	391	0	ENST00000268489.5:c.6272C>T	p.Pro2091Leu	p.P2091L	ENST00000268489	NM_006885.3	2091	cCg/cTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577143	7577144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	294	585	0	ENST00000269305.4:c.794dup	p.Arg267ThrfsTer5	p.R267Tfs*5	ENST00000269305	NM_001126112.2	265	ctg/ctTg																																																																														
BRD4	0	MSKCC	GRCh37	19	15353896	15353896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	105	590	0	ENST00000263377.2:c.2984G>A	p.Arg995Gln	p.R995Q	ENST00000263377	NM_058243.2	995	cGg/cAg																																																																														
CCNE1	0	MSKCC	GRCh37	19	30308171	30308171	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	161	663	1	ENST00000262643.3:c.311del	p.Pro104ArgfsTer5	p.P104Rfs*5	ENST00000262643	NM_001238.2	103	tCc/tc																																																																														
PMS1	0	MSKCC	GRCh37	2	190719795	190719796	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	61	467	0	ENST00000441310.2:c.1797_1798delinsAT	p.Asp600Tyr	p.D600Y	ENST00000441310	NM_000534.4	599	gaGGat/gaATat																																																																														
NF2	0	MSKCC	GRCh37	22	30067828	30067828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	230	376	0	ENST00000338641.4:c.1013G>A	p.Arg338His	p.R338H	ENST00000338641	NM_000268.3	338	cGc/cAc																																																																														
MLH1	0	MSKCC	GRCh37	3	37045890	37045890	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	12	615	0	ENST00000231790.2:c.307-2A>G		p.X103_splice	ENST00000231790	NM_000249.3	103																																																																															
MLH1	0	MSKCC	GRCh37	3	37061799	37061799	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	193	519	0	ENST00000231790.2:c.885-2A>T		p.X295_splice	ENST00000231790	NM_000249.3	295																																																																															
FBXW7	0	MSKCC	GRCh37	4	153247172	153247173	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	127	403	0	ENST00000281708.4:c.1629_1630del	p.Arg543SerfsTer7	p.R543Sfs*7	ENST00000281708	NM_033632.3	543	agAGtc/agtc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161786	56161786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			33	221	587	0	ENST00000399503.3:c.1283C>T	p.Thr428Met	p.T428M	ENST00000399503	NM_005921.1	428	aCg/aTg																																																																														
ESR1	0	MSKCC	GRCh37	6	152265545	152265545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	219	582	0	ENST00000206249.3:c.998C>A	p.Pro333His	p.P333H	ENST00000206249	NM_000125.3	333	cCt/cAt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604785	48604786	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGACGA			P-0023090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	82	497	0	ENST00000342988.3:c.1610_1615dup	p.Asp537_Glu538dup	p.D537_E538dup	ENST00000342988	NM_005359.5	537	cta/ctAGACGAa																																																																														
KRAS	0	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0023090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	154	688	1	ENST00000256078.4:c.180_181inv	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggGAaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578549	7578551	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0023090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	253	856	0	ENST00000269305.4:c.379_381del	p.Ser127del	p.S127del	ENST00000269305	NM_001126112.2	127	TCC/-																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	388	740	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7579582	7579583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	123	669	0	ENST00000269305.4:c.104dup	p.Leu35PhefsTer8	p.L35Ffs*8	ENST00000269305	NM_001126112.2	35	ttg/ttTg																																																																														
STK19	0	MSKCC	GRCh37	6	31939981	31939981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	142	572	1	ENST00000375331.2:c.208G>A	p.Gly70Arg	p.G70R	ENST00000375331	NM_004197.1	70	Gga/Aga																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593460	48593461	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	98	519	0	ENST00000342988.3:c.1213dup	p.His405ProfsTer24	p.H405Pfs*24	ENST00000342988	NM_005359.5	404	gac/gaCc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509624	106509624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023087-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	91	586	0	ENST00000359195.3:c.1618G>A	p.Gly540Arg	p.G540R	ENST00000359195	NM_002649.2	540	Ggg/Agg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	63	499	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KDM5A	0	MSKCC	GRCh37	12	475218	475218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	66	1045	0	ENST00000399788.2:c.419C>G	p.Ser140Cys	p.S140C	ENST00000399788	NM_001042603.1	140	tCt/tGt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822357	72822357	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0023054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	64	1134	0	ENST00000268489.5:c.9818C>G	p.Ser3273Ter	p.S3273*	ENST00000268489	NM_006885.3	3273	tCa/tGa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151917610	151917610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	75	938	1	ENST00000262189.6:c.3710G>A	p.Arg1237Gln	p.R1237Q	ENST00000262189	NM_170606.2	1237	cGa/cAa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	8	793	2	ENST00000292408.4:c.1648G>A	p.Val550Met	p.V550M	ENST00000292408	NM_213647.1	550	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0023052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	212	830	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716212	52716212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	258	632	3	ENST00000322088.6:c.656C>T	p.Ser219Leu	p.S219L	ENST00000322088	NM_014225.5	219	tCg/tTg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	167	618	1	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	202	617	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																																																														
NTRK3	0	MSKCC	GRCh37	15	88476387	88476387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202056599		P-0023052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	251	665	0	ENST00000360948.2:c.1745G>A	p.Arg582Gln	p.R582Q	ENST00000360948	NM_001012338.2	582	cGg/cAg																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66526498	66526498	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	68	566	0	ENST00000358598.2:c.1054C>T	p.Arg352Ter	p.R352*	ENST00000358598	NM_212471.2	352	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106528	27106528	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	251	959	1	ENST00000324856.7:c.6139G>T	p.Glu2047Ter	p.E2047*	ENST00000324856	NM_006015.4	2047	Gag/Tag																																																																														
SOS1	0	MSKCC	GRCh37	2	39285850	39285851	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAGGGTTTCTTCGCTTCCTC			P-0023052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	133	723	0	ENST00000402219.2:c.288_308dup	p.Arg97_Leu103dup	p.R97_L103dup	ENST00000402219	NM_005633.3	97	tta/ttGAGGAAGCGAAGAAACCCTTTa																																																																														
CASP8	0	MSKCC	GRCh37	2	202141594	202141594	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	215	540	0	ENST00000358485.4:c.882C>G	p.Tyr294Ter	p.Y294*	ENST00000358485	NM_001080125.1	294	taC/taG																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916932	178916932	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	206	613	0	ENST00000263967.3:c.319A>C	p.Asn107His	p.N107H	ENST00000263967	NM_006218.2	107	Aac/Cac																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0023045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	234	1016	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0023045-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	109	326	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374673	118374673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	62	524	0	ENST00000534358.1:c.8066G>T	p.Arg2689Ile	p.R2689I	ENST00000534358	NM_005933.3	2689	aGa/aTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	55	722	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	85	863	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
APC	0	MSKCC	GRCh37	5	112174086	112174086	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	55	561	0	ENST00000257430.4:c.2795C>A	p.Ser932Ter	p.S932*	ENST00000257430	NM_000038.5	932	tCa/tAa																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15299983	15299983	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022997-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	114	805	0	ENST00000263388.2:c.1195G>A	p.Ala399Thr	p.A399T	ENST00000263388	NM_000435.2	399	Gcc/Acc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610468	10610468	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	129	819	0	ENST00000171111.5:c.242T>G	p.Leu81Arg	p.L81R	ENST00000171111	NM_203500.1	81	cTg/cGg																																																																														
TP63	0	MSKCC	GRCh37	3	189612101	189612101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	194	808	1	ENST00000264731.3:c.1853G>A	p.Arg618Gln	p.R618Q	ENST00000264731	NM_003722.4	618	cGg/cAg																																																																														
CDK12	0	MSKCC	GRCh37	17	37619281	37619281	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	147	512	0	ENST00000447079.4:c.957C>G	p.Tyr319Ter	p.Y319*	ENST00000447079	NM_015083.1	319	taC/taG																																																																														
NUF2	0	MSKCC	GRCh37	1	163306556	163306556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	64	683	1	ENST00000271452.3:c.353G>T	p.Ser118Ile	p.S118I	ENST00000271452	NM_145697.2	118	aGt/aTt																																																																														
CDK12	0	MSKCC	GRCh37	17	37667825	37667825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	84	590	1	ENST00000447079.4:c.2710C>T	p.Pro904Ser	p.P904S	ENST00000447079	NM_015083.1	904	Cca/Tca																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	23	349	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	19	430	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
JAK1	0	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			109	25	521	4	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																																																														
RAD50	0	MSKCC	GRCh37	5	131915673	131915673	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28903088		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	17	392	0	ENST00000265335.6:c.671G>A	p.Arg224His	p.R224H	ENST00000265335		224	cGt/cAt																																																																														
TCF3	0	MSKCC	GRCh37	19	1623969	1623969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147142249		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	81	595	0	ENST00000344749.5:c.530C>T	p.Pro177Leu	p.P177L	ENST00000344749	NM_001136139.2	177	cCg/cTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272201	15272201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	43	624	0	ENST00000263388.2:c.6238C>T	p.Arg2080Trp	p.R2080W	ENST00000263388	NM_000435.2	2080	Cgg/Tgg																																																																														
AXIN1	0	MSKCC	GRCh37	16	348230	348230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	27	825	0	ENST00000262320.3:c.1276G>A	p.Asp426Asn	p.D426N	ENST00000262320	NM_003502.3	426	Gat/Aat																																																																														
LATS1	0	MSKCC	GRCh37	6	149982885	149982885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139248642		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	10	411	0	ENST00000253339.5:c.3373C>T	p.Arg1125Cys	p.R1125C	ENST00000253339		1125	Cgc/Tgc																																																																														
TCF3	0	MSKCC	GRCh37	19	1619849	1619849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	25	742	0	ENST00000344749.5:c.1097C>T	p.Thr366Met	p.T366M	ENST00000344749	NM_001136139.2	366	aCg/aTg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944250	81944250	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147396004		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	102	710	2	ENST00000359376.3:c.1859C>T	p.Thr620Met	p.T620M	ENST00000359376	NM_002661.3	620	aCg/aTg																																																																														
LYN	4067	MSKCC	GRCh37	8	56863054	56863054	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1266824391		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	18	481	0	ENST00000519728.1:c.327del	p.Glu110LysfsTer15	p.E110Kfs*15	ENST00000519728	NM_002350.3	107	acA/ac																																																																														
XPO1	0	MSKCC	GRCh37	2	61721099	61721099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	29	517	0	ENST00000401558.2:c.1175C>T	p.Pro392Leu	p.P392L	ENST00000401558	NM_003400.3	392	cCg/cTg																																																																														
PREX2	80243	MSKCC	GRCh37	8	68992720	68992721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs774202059		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	17	655	11	ENST00000288368.4:c.1693dup	p.Ser565PhefsTer3	p.S565Ffs*3	ENST00000288368	NM_024870.2	562	cgt/cgTt																																																																														
SPEN	0	MSKCC	GRCh37	1	16262433	16262433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	24	280	0	ENST00000375759.3:c.9698C>T	p.Ala3233Val	p.A3233V	ENST00000375759	NM_015001.2	3233	gCt/gTt																																																																														
NUF2	0	MSKCC	GRCh37	1	163306549	163306549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	25	406	1	ENST00000271452.3:c.346C>T	p.Arg116Trp	p.R116W	ENST00000271452	NM_145697.2	116	Cgg/Tgg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63816910	63816910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	19	170	0	ENST00000279873.7:c.881C>T	p.Pro294Leu	p.P294L	ENST00000279873	NM_032199.2	294	cCg/cTg																																																																														
CCND1	0	MSKCC	GRCh37	11	69465978	69465978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	78	824	1	ENST00000227507.2:c.816G>T	p.Glu272Asp	p.E272D	ENST00000227507	NM_053056.2	272	gaG/gaT																																																																														
ARID2	0	MSKCC	GRCh37	12	46231383	46231383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	17	399	0	ENST00000334344.6:c.1223C>A	p.Thr408Asn	p.T408N	ENST00000334344	NM_152641.2	408	aCt/aAt																																																																														
NTRK3	0	MSKCC	GRCh37	15	88669523	88669523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	17	458	0	ENST00000360948.2:c.1375C>T	p.Arg459Trp	p.R459W	ENST00000360948	NM_001012338.2	459	Cgg/Tgg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779091	3779091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	14	576	0	ENST00000262367.5:c.5957C>T	p.Thr1986Met	p.T1986M	ENST00000262367	NM_004380.2	1986	aCg/aTg																																																																														
TCF3	0	MSKCC	GRCh37	19	1619412	1619412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	40	929	1	ENST00000344749.5:c.1229G>A	p.Gly410Asp	p.G410D	ENST00000344749	NM_001136139.2	410	gGc/gAc																																																																														
ERF	0	MSKCC	GRCh37	19	42753795	42753795	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	110	924	0	ENST00000222329.4:c.469G>T	p.Glu157Ter	p.E157*	ENST00000222329	NM_006494.2	157	Gag/Tag																																																																														
MYCN	0	MSKCC	GRCh37	2	16082775	16082775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			86	35	216	2	ENST00000281043.3:c.589G>A	p.Val197Met	p.V197M	ENST00000281043	NM_005378.4	197	Gtg/Atg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25469085	25469085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	85	805	0	ENST00000264709.3:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000264709	NM_175629.2	458	cGg/cAg																																																																														
ALK	0	MSKCC	GRCh37	2	29940499	29940499	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			55	18	494	0	ENST00000389048.3:c.732T>A	p.Asn244Lys	p.N244K	ENST00000389048	NM_004304.4	244	aaT/aaA																																																																														
PMS1	0	MSKCC	GRCh37	2	190660633	190660633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	26	285	0	ENST00000441310.2:c.271G>A	p.Gly91Ser	p.G91S	ENST00000441310	NM_000534.4	91	Ggt/Agt																																																																														
SETD2	0	MSKCC	GRCh37	3	47162989	47162989	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	15	368	0	ENST00000409792.3:c.3137A>G	p.Asn1046Ser	p.N1046S	ENST00000409792	NM_014159.6	1046	aAt/aGt																																																																														
RYBP	0	MSKCC	GRCh37	3	72427778	72427778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	35	237	0	ENST00000477973.2:c.710A>G	p.Lys238Glu	p.K238E	ENST00000477973	NM_012234.5	238	Aaa/Gaa																																																																														
FAT1	0	MSKCC	GRCh37	4	187628344	187628344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199836705		P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	64	680	4	ENST00000441802.2:c.2638G>A	p.Ala880Thr	p.A880T	ENST00000441802	NM_005245.3	880	Gca/Aca																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858314	27858314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	103	518	0	ENST00000359303.2:c.257A>G	p.Gln86Arg	p.Q86R	ENST00000359303	NM_003535.2	86	cAg/cGg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32168953	32168953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	79	866	2	ENST00000375023.3:c.4080G>T	p.Gln1360His	p.Q1360H	ENST00000375023	NM_004557.3	1360	caG/caT																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170102	32170102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	80	769	0	ENST00000375023.3:c.3506G>T	p.Arg1169Leu	p.R1169L	ENST00000375023	NM_004557.3	1169	cGg/cTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859589	151859589	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	24	439	0	ENST00000262189.6:c.11073A>C	p.Gln3691His	p.Q3691H	ENST00000262189	NM_170606.2	3691	caA/caC																																																																														
PTCH1	0	MSKCC	GRCh37	9	98218678	98218679	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	39	373	0	ENST00000331920.6:c.3185_3186delinsCT	p.Leu1062Pro	p.L1062P	ENST00000331920	NM_000264.3	1062	cTG/cCT																																																																														
RXRA	0	MSKCC	GRCh37	9	137309018	137309018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023067-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	63	768	2	ENST00000481739.1:c.625C>T	p.Arg209Trp	p.R209W	ENST00000481739	NM_002957.4	209	Cgg/Tgg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151842283	151842283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	43	658	0	ENST00000262189.6:c.14129G>A	p.Arg4710His	p.R4710H	ENST00000262189	NM_170606.2	4710	cGt/cAt																																																																														
CDH1	0	MSKCC	GRCh37	16	68772225	68772226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	259	1087	0	ENST00000261769.5:c.76dup	p.Glu26GlyfsTer8	p.E26Gfs*8	ENST00000261769	NM_004360.3	25	ccg/ccGg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178351	56178384	+	frameshift_variant	Frame_Shift_Del	DEL	TGACGAGACAGTGTTCACCCCAGTAGAGGAGAAA	TGACGAGACAGTGTTCACCCCAGTAGAGGAGAAA	-			P-0023127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	326	544	0	ENST00000399503.3:c.3326_3359del	p.Asp1109AlafsTer3	p.D1109Afs*3	ENST00000399503	NM_005921.1	1108	agTGACGAGACAGTGTTCACCCCAGTAGAGGAGAAA/ag																																																																														
KMT2C	0	MSKCC	GRCh37	7	152012269	152012269	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	485	864	0	ENST00000262189.6:c.544G>T	p.Glu182Ter	p.E182*	ENST00000262189	NM_170606.2	182	Gag/Tag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	437	521	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0023055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	240	728	1				ENST00000310581	NM_198253.2																																																																																
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	125	453	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	465	1061	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
ATM	0	MSKCC	GRCh37	11	108098533	108098533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	209	461	2	ENST00000278616.4:c.103C>T	p.Arg35Ter	p.R35*	ENST00000278616	NM_000051.3	35	Cga/Tga																																																																														
PTPN11	0	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	257	687	2	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg																																																																														
MEN1	0	MSKCC	GRCh37	11	64572188	64572188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	68	745	1	ENST00000337652.1:c.1466G>A	p.Arg489Gln	p.R489Q	ENST00000337652	NM_130803.2	489	cGg/cAg																																																																														
PRKCI	0	MSKCC	GRCh37	3	170015175	170015175	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	51	737	0	ENST00000295797.4:c.1581G>A	p.Trp527Ter	p.W527*	ENST00000295797	NM_002740.5	527	tgG/tgA																																																																														
MET	0	MSKCC	GRCh37	7	116339193	116339193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	92	368	0	ENST00000397752.3:c.55G>A	p.Val19Met	p.V19M	ENST00000397752	NM_000245.2	19	Gtg/Atg																																																																														
ABL1	0	MSKCC	GRCh37	9	133750430	133750430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	159	737	1	ENST00000318560.5:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000318560	NM_005157.4	421	Gac/Aac																																																																														
RBM10	0	MSKCC	GRCh37	X	47041391	47041391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	168	647	0	ENST00000329236.7:c.1501G>A	p.Gly501Ser	p.G501S	ENST00000329236	NM_001204466.1	501	Ggc/Agc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	229	752	0				ENST00000310581	NM_198253.2																																																																																
ARID1A	0	MSKCC	GRCh37	1	27100375	27100375	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	157	806	1	ENST00000324856.7:c.4087C>T	p.Gln1363Ter	p.Q1363*	ENST00000324856	NM_006015.4	1363	Caa/Taa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5265021	5265021	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	140	854	0	ENST00000357368.4:c.566C>G	p.Ser189Ter	p.S189*	ENST00000357368	NM_002850.3	189	tCa/tGa																																																																														
RB1	0	MSKCC	GRCh37	13	48955578	48955578	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	515	417	0	ENST00000267163.4:c.1694C>G	p.Ser565Ter	p.S565*	ENST00000267163	NM_000321.2	565	tCa/tGa																																																																														
PALB2	0	MSKCC	GRCh37	16	23646234	23646234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	186	809	0	ENST00000261584.4:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000261584	NM_024675.3	545	Gaa/Aaa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81922876	81922876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	122	614	1	ENST00000359376.3:c.865G>A	p.Glu289Lys	p.E289K	ENST00000359376	NM_002661.3	289	Gag/Aag																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031997	26031997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	278	552	0	ENST00000244661.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000244661	NM_003537.3	98	Gag/Aag																																																																														
NUF2	0	MSKCC	GRCh37	1	163315549	163315549	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	97	655	0	ENST00000271452.3:c.889C>G	p.Gln297Glu	p.Q297E	ENST00000271452	NM_145697.2	297	Caa/Gaa																																																																														
GLI1	0	MSKCC	GRCh37	12	57861968	57861968	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	128	584	0	ENST00000228682.2:c.1269C>G	p.Ile423Met	p.I423M	ENST00000228682	NM_005269.2	423	atC/atG																																																																														
STAT5B	0	MSKCC	GRCh37	17	40370212	40370212	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	436	1047	0	ENST00000293328.3:c.1126G>C	p.Glu376Gln	p.E376Q	ENST00000293328	NM_012448.3	376	Gag/Cag																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774771	73774771	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	671	851	0	ENST00000254810.4:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000254810	NM_005324.3	106	Gaa/Caa																																																																														
CALR	0	MSKCC	GRCh37	19	13051153	13051153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	124	692	0	ENST00000316448.5:c.589G>C	p.Glu197Gln	p.E197Q	ENST00000316448	NM_004343.3	197	Gaa/Caa																																																																														
CIC	0	MSKCC	GRCh37	19	42788864	42788864	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	136	800	0	ENST00000575354.2:c.8C>G	p.Ser3Trp	p.S3W	ENST00000575354	NM_015125.3	3	tCg/tGg																																																																														
PDCD1	0	MSKCC	GRCh37	2	242793239	242793239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	190	1139	0	ENST00000334409.5:c.838G>C	p.Glu280Gln	p.E280Q	ENST00000334409	NM_005018.2	280	Gag/Cag																																																																														
SETD2	0	MSKCC	GRCh37	3	47125716	47125716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	117	535	0	ENST00000409792.3:c.5554C>A	p.His1852Asn	p.H1852N	ENST00000409792	NM_014159.6	1852	Cat/Aat																																																																														
MST1R	0	MSKCC	GRCh37	3	49935623	49935623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	121	852	0	ENST00000296474.3:c.1741C>G	p.Leu581Val	p.L581V	ENST00000296474	NM_002447.2	581	Cta/Gta																																																																														
INPP4B	0	MSKCC	GRCh37	4	143081684	143081684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	102	433	0	ENST00000262992.4:c.1390C>G	p.Gln464Glu	p.Q464E	ENST00000262992	NM_001101669.1	464	Caa/Gaa																																																																														
FAT1	0	MSKCC	GRCh37	4	187521451	187521451	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	371	599	1	ENST00000441802.2:c.11704C>T	p.Gln3902Ter	p.Q3902*	ENST00000441802	NM_005245.3	3902	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112177701	112177701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	58	453	0	ENST00000257430.4:c.6410C>A	p.Ser2137Tyr	p.S2137Y	ENST00000257430	NM_000038.5	2137	tCc/tAc																																																																														
NSD1	0	MSKCC	GRCh37	5	176707668	176707668	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	112	630	0	ENST00000439151.2:c.5725T>G	p.Ser1909Ala	p.S1909A	ENST00000439151	NM_022455.4	1909	Tct/Gct																																																																														
ARID1B	0	MSKCC	GRCh37	6	157528765	157528765	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	95	597	0	ENST00000346085.5:c.6490G>C	p.Glu2164Gln	p.E2164Q	ENST00000346085	NM_020732.3	2164	Gag/Cag																																																																														
HGF	0	MSKCC	GRCh37	7	81335693	81335693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	111	651	0	ENST00000222390.5:c.1667G>T	p.Arg556Ile	p.R556I	ENST00000222390	NM_000601.4	556	aGa/aTa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38184335	38184335	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	357	814	0	ENST00000317025.8:c.1621G>C	p.Asp541His	p.D541H	ENST00000317025	NM_023034.1	541	Gac/Cac																																																																														
EGFL7	0	MSKCC	GRCh37	9	139566418	139566418	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023053-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	302	924	0	ENST00000308874.7:c.677C>A	p.Ser226Ter	p.S226*	ENST00000308874		226	tCg/tAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845705	151845705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	99	768	1	ENST00000262189.6:c.13307C>T	p.Ser4436Phe	p.S4436F	ENST00000262189	NM_170606.2	4436	tCc/tTc																																																																														
MEN1	0	MSKCC	GRCh37	11	64572102	64572102	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	43	912	0	ENST00000337652.1:c.1552G>T	p.Gly518Ter	p.G518*	ENST00000337652	NM_130803.2	518	Gga/Tga																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845557	151845557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	122	880	0	ENST00000262189.6:c.13455C>A	p.Phe4485Leu	p.F4485L	ENST00000262189	NM_170606.2	4485	ttC/ttA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0023014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	256	770	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
PAK7	0	MSKCC	GRCh37	20	9525116	9525116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	217	583	0	ENST00000353224.5:c.1769G>T	p.Cys590Phe	p.C590F	ENST00000353224	NM_177990.2	590	tGt/tTt																																																																														
RRAS2	0	MSKCC	GRCh37	11	14317322	14317322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	111	675	0	ENST00000256196.4:c.188G>C	p.Arg63Pro	p.R63P	ENST00000256196		63	cGg/cCg																																																																														
STK11	0	MSKCC	GRCh37	19	1218431	1218436	+	inframe_deletion	In_Frame_Del	DEL	GAGGAG	GAGGAG	-			P-0023014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	353	821	0	ENST00000326873.7:c.307_312del	p.Arg103_Arg104del	p.R103_R104del	ENST00000326873	NM_000455.4	102	ctGAGGAGg/ctg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10599944	10599944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	441	915	0	ENST00000171111.5:c.1632G>T	p.Trp544Cys	p.W544C	ENST00000171111	NM_203500.1	544	tgG/tgT																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0023051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	46	609	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0023051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	57	983	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
DUSP4	0	MSKCC	GRCh37	8	29194718	29194718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	51	1125	0	ENST00000240100.2:c.1010C>T	p.Thr337Met	p.T337M	ENST00000240100	NM_001394.6	337	aCg/aTg																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0023046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	224	503	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0023046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			74	93	360	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																															
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	117	489	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	99	336	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	274	534	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																																																														
ELF3	0	MSKCC	GRCh37	1	201982403	201982404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	231	748	0	ENST00000359651.3:c.783dupC	p.Glu262ArgfsTer39	p.E262Rfs*39	ENST00000359651		261	ctc/ctCc																																																																														
SLX4	0	MSKCC	GRCh37	16	3639936	3639936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	140	689	0	ENST00000294008.3:c.3703C>T	p.Pro1235Ser	p.P1235S	ENST00000294008	NM_032444.2	1235	Ccc/Tcc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151853089	151853089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	160	532	0	ENST00000262189.6:c.11866G>C	p.Asp3956His	p.D3956H	ENST00000262189	NM_170606.2	3956	Gac/Cac																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969432	44969433	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0023001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	185	339	0	ENST00000377967.4:c.4115_4116del	p.Phe1372CysfsTer16	p.F1372Cfs*16	ENST00000377967	NM_021140.2	1372	TTt/t																																																																														
MED12	0	MSKCC	GRCh37	X	70356239	70356239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	39	399	0	ENST00000374080.3:c.5134C>T	p.Arg1712Trp	p.R1712W	ENST00000374080		1712	Cgg/Tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	41	954	2	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	639	826	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100532	157100532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	423	433	0	ENST00000346085.5:c.1469G>A	p.Trp490Ter	p.W490*	ENST00000346085	NM_020732.3	490	tGg/tAg																																																																														
FLT4	0	MSKCC	GRCh37	5	180030329	180030329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142322370		P-0023049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	189	965	1	ENST00000261937.6:c.3955C>T	p.Arg1319Trp	p.R1319W	ENST00000261937	NM_182925.4	1319	Cgg/Tgg																																																																														
RAD21	0	MSKCC	GRCh37	8	117874164	117874164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023049-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	54	561	0	ENST00000297338.2:c.290C>G	p.Pro97Arg	p.P97R	ENST00000297338	NM_006265.2	97	cCt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578464	7578464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1545	117	1260	0	ENST00000269305.4:c.466C>G	p.Arg156Gly	p.R156G	ENST00000269305	NM_001126112.2	156	Cgc/Ggc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	291	680	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	291	680	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	134	411	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	416	1014	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056648	26056648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	39	194	0	ENST00000343677.2:c.9G>C	p.Glu3Asp	p.E3D	ENST00000343677	NM_005319.3	3	gaG/gaC																																																																														
PGR	0	MSKCC	GRCh37	11	100998408	100998408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	129	397	0	ENST00000325455.5:c.1394C>T	p.Ala465Val	p.A465V	ENST00000325455	NM_001202474.3	465	gCg/gTg																																																																														
GLI1	0	MSKCC	GRCh37	12	57860126	57860126	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	329	1019	0	ENST00000228682.2:c.866T>G	p.Val289Gly	p.V289G	ENST00000228682	NM_005269.2	289	gTg/gGg																																																																														
RB1	0	MSKCC	GRCh37	13	48937056	48937056	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	93	422	0	ENST00000267163.4:c.824A>C	p.Glu275Ala	p.E275A	ENST00000267163	NM_000321.2	275	gAa/gCa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031928	10031928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	91	891	0	ENST00000330684.3:c.895C>A	p.Leu299Ile	p.L299I	ENST00000330684	NM_001134407.1	299	Cta/Ata																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210497	2210498	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1065	219	1175	2	ENST00000398665.3:c.1104_1105del	p.Asp369ArgfsTer8	p.D369Rfs*8	ENST00000398665	NM_032482.2	368	gcCGac/gcac																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610172	10610172	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	410	999	0	ENST00000171111.5:c.538del	p.Asp180ThrfsTer50	p.D180Tfs*50	ENST00000171111	NM_203500.1	180	Gac/ac																																																																														
FAT1	0	MSKCC	GRCh37	4	187628488	187628488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	272	1204	0	ENST00000441802.2:c.2494A>C	p.Ser832Arg	p.S832R	ENST00000441802	NM_005245.3	832	Agt/Cgt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251857	212251857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	135	337	0	ENST00000342788.4:c.3202G>A	p.Asp1068Asn	p.D1068N	ENST00000342788	NM_005235.2	1068	Gat/Aat																																																																														
WT1	0	MSKCC	GRCh37	11	32456886	32456886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	413	663	0	ENST00000332351.3:c.6G>T	p.Gln2His	p.Q2H	ENST00000332351	NM_024426.4	2	caG/caT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49418394	49418394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	411	832	0	ENST00000301067.7:c.16019G>C	p.Arg5340Pro	p.R5340P	ENST00000301067	NM_003482.3	5340	cGa/cCa																																																																														
RB1	0	MSKCC	GRCh37	13	48955493	48955493	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0023039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			19	226	584	1	ENST00000267163.4:c.1609A>T	p.Lys537Ter	p.K537*	ENST00000267163	NM_000321.2	537	Aaa/Taa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40739097	40739097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	493	802	0	ENST00000373198.4:c.3187C>T	p.Leu1063Phe	p.L1063F	ENST00000373198	NM_133170.3	1063	Ctc/Ttc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31448684	31448684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	378	889	0	ENST00000344624.3:c.2852G>A	p.Arg951His	p.R951H	ENST00000344624		951	cGc/cAc																																																																														
ROS1	0	MSKCC	GRCh37	6	117609893	117609893	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023039-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	381	986	0	ENST00000368508.3:c.6806G>C	p.Arg2269Pro	p.R2269P	ENST00000368508	NM_002944.2	2269	cGa/cCa																																																																														
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0023160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	106	509	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																																																															
GATA3	0	MSKCC	GRCh37	10	8115697	8115703	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTAGAT	TTTAGAT	-			P-0023160-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	52	485	0	ENST00000346208.3:c.1048-4_1050del		p.X350_splice	ENST00000346208		350																																																																															
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023175-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	204	837	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	116	482	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0023174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	519	641	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350692	89350692	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143279397		P-0023174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	358	1148	1	ENST00000301030.4:c.2258C>T	p.Pro753Leu	p.P753L	ENST00000301030	NM_001256183.1	753	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	42	672	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44918514	44918514	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	28	243	0	ENST00000377967.4:c.997C>T	p.Gln333Ter	p.Q333*	ENST00000377967	NM_021140.2	333	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	23	928	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0023166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	26	883	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	79	967	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
INPP4A	0	MSKCC	GRCh37	2	99182509	99182509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	104	783	1	ENST00000074304.5:c.2312G>A	p.Arg771Gln	p.R771Q	ENST00000074304	NM_001134224.1	771	cGg/cAg																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553506	106553506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023167-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	51	496	1	ENST00000369096.4:c.1471G>T	p.Ala491Ser	p.A491S	ENST00000369096	NM_001198.3	491	Gcg/Tcg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	216	727	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																																																														
AR	0	MSKCC	GRCh37	X	66931463	66931464	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0023170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	141	452	0	ENST00000374690.3:c.2105_2106delinsAT	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTC/cAT																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	14	919	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	32	1054	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																																																														
KRAS	0	MSKCC	GRCh37	12	25398255	25398255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	70	910	0	ENST00000256078.4:c.64C>A	p.Gln22Lys	p.Q22K	ENST00000256078	NM_033360.2	22	Cag/Aag																																																																														
RBM10	0	MSKCC	GRCh37	X	47038563	47038563	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	125	958	0	ENST00000329236.7:c.493+1G>T		p.X165_splice	ENST00000329236	NM_001204466.1	165																																																																															
MAP2K1	0	MSKCC	GRCh37	15	66729181	66729181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	75	977	0	ENST00000307102.5:c.389A>G	p.Tyr130Cys	p.Y130C	ENST00000307102	NM_002755.3	130	tAt/tGt																																																																														
RAF1	0	MSKCC	GRCh37	3	12627284	12627284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	60	582	0	ENST00000251849.4:c.1432G>A	p.Glu478Lys	p.E478K	ENST00000251849	NM_002880.3	478	Gaa/Aaa																																																																														
FH	0	MSKCC	GRCh37	1	241667422	241667422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	70	748	0	ENST00000366560.3:c.1028G>T	p.Arg343Leu	p.R343L	ENST00000366560	NM_000143.3	343	cGa/cTa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18658283	18658283	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	47	719	0	ENST00000266497.5:c.3088G>T	p.Gly1030Ter	p.G1030*	ENST00000266497		1030	Gga/Tga																																																																														
CSF1R	0	MSKCC	GRCh37	5	149449779	149449779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	91	799	0	ENST00000286301.3:c.1285G>T	p.Val429Leu	p.V429L	ENST00000286301	NM_005211.3	429	Gtg/Ttg																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553400	106553400	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	37	443	0	ENST00000369096.4:c.1365C>G	p.Ser455Arg	p.S455R	ENST00000369096	NM_001198.3	455	agC/agG																																																																														
AR	0	MSKCC	GRCh37	X	66765605	66765605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	85	1173	0	ENST00000374690.3:c.617G>T	p.Ser206Ile	p.S206I	ENST00000374690	NM_000044.3	206	aGc/aTc																																																																														
MED12	0	MSKCC	GRCh37	X	70347783	70347783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	107	667	0	ENST00000374080.3:c.3022G>T	p.Val1008Leu	p.V1008L	ENST00000374080		1008	Gtg/Ttg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0023158-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	22	876	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	25	627	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																																																														
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0023130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	298	793	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0023130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	205	583	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52723068	52723068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	141	605	2	ENST00000322088.6:c.1253G>A	p.Arg418Gln	p.R418Q	ENST00000322088	NM_014225.5	418	cGg/cAg																																																																														
MTOR	0	MSKCC	GRCh37	1	11188590	11188590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	29	542	0	ENST00000361445.4:c.5831C>T	p.Ala1944Val	p.A1944V	ENST00000361445	NM_004958.3	1944	gCa/gTa																																																																														
ATR	0	MSKCC	GRCh37	3	142272559	142272559	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	238	792	0	ENST00000350721.4:c.2556A>T	p.Glu852Asp	p.E852D	ENST00000350721	NM_001184.3	852	gaA/gaT																																																																														
TSHR	0	MSKCC	GRCh37	14	81609993	81609993	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139892516		P-0023161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	109	325	0	ENST00000298171.2:c.1591C>T	p.Arg531Trp	p.R531W	ENST00000298171	NM_000369.2	531	Cgg/Tgg																																																																														
SETD2	0	MSKCC	GRCh37	3	47164417	47164419	+	frameshift_variant	Frame_Shift_Del	DEL	TTA	TTA	AT			P-0023161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	61	371	0	ENST00000409792.3:c.1707_1709delinsAT	p.Phe569LeufsTer2	p.F569Lfs*2	ENST00000409792	NM_014159.6	569	ttTAAa/ttATa																																																																														
EGFR	0	MSKCC	GRCh37	7	552424659	552424668	+		IGR	DEL	NNNNNNNNNN	NNNNNNNNNN	C			P-0023161-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	610	154	0																																																																																					
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	144	730	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103518184	103518184	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	70	398	0	ENST00000355739.4:c.2122G>T	p.Asp708Tyr	p.D708Y	ENST00000355739	NM_000123.3	708	Gac/Tac																																																																														
ERCC5	0	MSKCC	GRCh37	13	103518732	103518732	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	30	445	0	ENST00000355739.4:c.2319+1G>T		p.X773_splice	ENST00000355739	NM_000123.3	773																																																																															
KEAP1	0	MSKCC	GRCh37	19	10599868	10599868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	181	727	2	ENST00000171111.5:c.1708G>A	p.Gly570Arg	p.G570R	ENST00000171111	NM_203500.1	570	Gga/Aga																																																																														
ALK	0	MSKCC	GRCh37	2	29416698	29416698	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56181542		P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	161	628	0	ENST00000389048.3:c.4255G>A	p.Glu1419Lys	p.E1419K	ENST00000389048	NM_004304.4	1419	Gag/Aag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643806	52643806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	140	652	0	ENST00000394830.3:c.2090A>G	p.Tyr697Cys	p.Y697C	ENST00000394830	NM_018313.4	697	tAt/tGt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808373	1808373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	405	1182	0	ENST00000260795.2:c.2131C>T	p.His711Tyr	p.H711Y	ENST00000260795		711	Cac/Tac																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589599	67589616	+	inframe_deletion	In_Frame_Del	DEL	TCAGTTTCAAGAAAAAAG	TCAGTTTCAAGAAAAAAG	-			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	78	529	0	ENST00000274335.5:c.1364_1381del	p.Gln455_Ser460del	p.Q455_S460del	ENST00000274335		454	acTCAGTTTCAAGAAAAAAGt/act																																																																														
RBM10	0	MSKCC	GRCh37	X	47030493	47030493	+	intron_variant	Intron	SNP	C	C	T			P-0023133-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	149	429	0	ENST00000329236.7:c.201+1596C>T		p.*67*	ENST00000329236	NM_001204466.1																																																																																
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	77	649	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0023009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	36	433	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0023009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	36	433	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	102	566	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
SMAD4	0	MSKCC	GRCh37	18	48573605	48573605	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	18	368	0	ENST00000342988.3:c.191del	p.Asn64MetfsTer30	p.N64Mfs*30	ENST00000342988	NM_005359.5	63	acA/ac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	225	867	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138521	11138521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	226	1081	0	ENST00000344626.4:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000344626	NM_003072.3	1093	Cga/Tga																																																																														
RET	0	MSKCC	GRCh37	10	43615108	43615108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	262	1049	0	ENST00000355710.3:c.2522C>A	p.Pro841Gln	p.P841Q	ENST00000355710	NM_020975.4	841	cCg/cAg																																																																														
SESN3	0	MSKCC	GRCh37	11	94918610	94918610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	173	874	0	ENST00000536441.1:c.572T>C	p.Val191Ala	p.V191A	ENST00000536441	NM_144665.3	191	gTa/gCa																																																																														
ATM	0	MSKCC	GRCh37	11	108235833	108235833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	108	674	0	ENST00000278616.4:c.8875G>A	p.Asp2959Asn	p.D2959N	ENST00000278616	NM_000051.3	2959	Gac/Aac																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7989407	7989407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	130	1040	0	ENST00000319144.4:c.279C>A	p.Asn93Lys	p.N93K	ENST00000319144	NM_001139.2	93	aaC/aaA																																																																														
STK11	0	MSKCC	GRCh37	19	1221227	1221228	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	304	987	2	ENST00000326873.7:c.750_751delinsCT	p.Gly251Cys	p.G251C	ENST00000326873	NM_000455.4	250	acGGgt/acCTgt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713354	30713355	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	33	645	0	ENST00000359013.4:c.754_755insC	p.Ile252ThrfsTer19	p.I252Tfs*19	ENST00000359013	NM_001024847.2	252	atc/aCtc																																																																														
ATRX	0	MSKCC	GRCh37	X	76891404	76891404	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0023012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	125	574	0	ENST00000373344.5:c.4699+2T>G		p.X1567_splice	ENST00000373344	NM_000489.3	1567																																																																															
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	64	879	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	128	724	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
KIT	0	MSKCC	GRCh37	4	55593437	55593437	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55792975		P-0023013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	66	628	2	ENST00000288135.5:c.1594G>A	p.Val532Ile	p.V532I	ENST00000288135	NM_000222.2	532	Gta/Ata																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209489	98209489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023013-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	45	745	1	ENST00000331920.6:c.4049G>A	p.Arg1350Gln	p.R1350Q	ENST00000331920	NM_000264.3	1350	cGg/cAg																																																																														
TBX3	0	MSKCC	GRCh37	12	115118941	115118942	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	48	452	0	ENST00000257566.3:c.399dup	p.Pro134SerfsTer4	p.P134Sfs*4	ENST00000257566	NM_016569.3	133	-/T																																																																														
CDH1	0	MSKCC	GRCh37	16	68842746	68842747	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0023135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	35	654	1	ENST00000261769.5:c.683dup	p.Tyr228Ter	p.Y228*	ENST00000261769	NM_004360.3	228	tac/tAac																																																																														
RAD50	0	MSKCC	GRCh37	5	131944389	131944389	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023135-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	68	620	1	ENST00000265335.6:c.2801A>G	p.Asn934Ser	p.N934S	ENST00000265335		934	aAt/aGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	400	921	1	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																																																														
MAX	0	MSKCC	GRCh37	14	65560514	65560514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	365	548	0	ENST00000358664.4:c.83A>G	p.His28Arg	p.H28R	ENST00000358664	NM_002382.4	28	cAt/cGt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	113	338	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																																																														
MGA	0	MSKCC	GRCh37	15	42028504	42028504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	87	596	1	ENST00000219905.7:c.4042C>T	p.Arg1348Trp	p.R1348W	ENST00000219905	NM_001164273.1	1348	Cgg/Tgg																																																																														
EP300	0	MSKCC	GRCh37	22	41573047	41573047	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	244	892	0	ENST00000263253.7:c.5334del	p.Cys1779AlafsTer29	p.C1779Afs*29	ENST00000263253	NM_001429.3	1778	Ggg/gg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589583	67589596	+	protein_altering_variant	In_Frame_Del	DEL	TACATGAATATAAC	TACATGAATATAAC	GT			P-0023066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	82	345	2	ENST00000274335.5:c.1346_1359delinsGT	p.Leu449_Asn453delinsCys	p.L449_N453delinsC	ENST00000274335		449	tTACATGAATATAAC/tGT																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061231	38061231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	57	768	0	ENST00000250448.2:c.758T>C	p.Met253Thr	p.M253T	ENST00000250448	NM_004496.3	253	aTg/aCg																																																																														
TP53	0	MSKCC	GRCh37	17	7579861	7579861	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			959	150	859	0	ENST00000269305.4:c.52delA	p.Thr18HisfsTer26	p.T18Hfs*26	ENST00000269305	NM_001126112.2	18	Aca/ca																																																																														
FAT1	2195	MSKCC	GRCh37	4	187560908	187560908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	38	513	0	ENST00000441802.2:c.3610G>A	p.Asp1204Asn	p.D1204N	ENST00000441802	NM_005245.3	1204	Gac/Aac																																																																														
ACVR1	0	MSKCC	GRCh37	2	158617503	158617503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	51	703	1	ENST00000263640.3:c.1153G>A	p.Glu385Lys	p.E385K	ENST00000263640	NM_001105.4	385	Gaa/Aaa																																																																														
VTCN1	0	MSKCC	GRCh37	1	117699360	117699360	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	356	800	0	ENST00000369458.3:c.281A>G	p.Asp94Gly	p.D94G	ENST00000369458	NM_024626.3	94	gAt/gGt																																																																														
BAP1	0	MSKCC	GRCh37	3	52440330	52440331	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023140-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	266	852	0	ENST00000460680.1:c.721dup	p.Tyr241LeufsTer2	p.Y241Lfs*2	ENST00000460680	NM_004656.3	241	tat/tTat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	85	432	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0023138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	138	621	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63531801	63531801	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200460573		P-0023138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	87	788	2	ENST00000307078.5:c.2180C>T	p.Ser727Leu	p.S727L	ENST00000307078	NM_004655.3	727	tCg/tTg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981110	201981111	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0023138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	86	793	0	ENST00000359651.3:c.193dupC	p.Gln65ProfsTer27	p.Q65Pfs*27	ENST00000359651		63	-/C																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64127791	64127791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	59	710	2	ENST00000334205.4:c.284C>T	p.Ala95Val	p.A95V	ENST00000334205	NM_003942.2	95	gCg/gTg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94197398	94197398	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	319	633	0	ENST00000323929.3:c.1106A>G	p.Tyr369Cys	p.Y369C	ENST00000323929	NM_005591.3	369	tAt/tGt																																																																														
PGR	0	MSKCC	GRCh37	11	100922264	100922264	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	70	694	0	ENST00000325455.5:c.2248C>G	p.Leu750Val	p.L750V	ENST00000325455	NM_001202474.3	750	Ctc/Gtc																																																																														
CBL	0	MSKCC	GRCh37	11	119156101	119156101	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0023138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	66	868	0	ENST00000264033.4:c.1766C>G	p.Ser589Ter	p.S589*	ENST00000264033	NM_005188.3	589	tCa/tGa																																																																														
CBL	0	MSKCC	GRCh37	11	119156203	119156203	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	56	777	1	ENST00000264033.4:c.1868C>A	p.Ser623Ter	p.S623*	ENST00000264033	NM_005188.3	623	tCa/tAa																																																																														
CYLD	0	MSKCC	GRCh37	16	50830296	50830296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	97	749	0	ENST00000398568.2:c.2739G>C	p.Leu913Phe	p.L913F	ENST00000398568	NM_001042412.1	913	ttG/ttC																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467362	66467362	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	15	284	0	ENST00000273854.3:c.907C>G	p.Gln303Glu	p.Q303E	ENST00000273854	NM_004439.5	303	Caa/Gaa																																																																														
NSD1	0	MSKCC	GRCh37	5	176638590	176638590	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	76	946	0	ENST00000439151.2:c.3190C>G	p.Leu1064Val	p.L1064V	ENST00000439151	NM_022455.4	1064	Ctt/Gtt																																																																														
BCOR	0	MSKCC	GRCh37	X	39913186	39913186	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023138-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	41	374	0	ENST00000378444.4:c.4929G>C	p.Glu1643Asp	p.E1643D	ENST00000378444	NM_001123385.1	1643	gaG/gaC																																																																														
APC	0	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	112	409	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	123	447	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	234	780	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	306	888	0	ENST00000269305.4:c.731G>T	p.Gly244Val	p.G244V	ENST00000269305	NM_001126112.2	244	gGc/gTc																																																																														
E2F3	0	MSKCC	GRCh37	6	20483132	20483132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	139	409	0	ENST00000346618.3:c.865G>A	p.Glu289Lys	p.E289K	ENST00000346618	NM_001949.4	289	Gag/Aag																																																																														
ARID5B	0	MSKCC	GRCh37	10	63759935	63759935	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	137	408	0	ENST00000279873.7:c.588T>G	p.Asp196Glu	p.D196E	ENST00000279873	NM_032199.2	196	gaT/gaG																																																																														
CREBBP	0	MSKCC	GRCh37	16	3823891	3823891	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	308	882	0	ENST00000262367.5:c.2324T>A	p.Met775Lys	p.M775K	ENST00000262367	NM_004380.2	775	aTg/aAg																																																																														
FBXW7	0	MSKCC	GRCh37	4	153271204	153271204	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	196	378	0	ENST00000281708.4:c.574G>T	p.Glu192Ter	p.E192*	ENST00000281708	NM_033632.3	192	Gaa/Taa																																																																														
SMO	0	MSKCC	GRCh37	7	128851940	128851940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	317	780	0	ENST00000249373.3:c.2012G>A	p.Arg671Gln	p.R671Q	ENST00000249373	NM_005631.4	671	cGg/cAg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	220	967	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0023137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	154	552	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0023137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	149	597	2	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																														
CCND1	0	MSKCC	GRCh37	11	69466040	69466040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	195	845	0	ENST00000227507.2:c.878T>A	p.Val293Glu	p.V293E	ENST00000227507	NM_053056.2	293	gTg/gAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105997	27105998	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0023137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	195	679	0	ENST00000324856.7:c.5610_5611dup	p.His1871LeufsTer13	p.H1871Lfs*13	ENST00000324856	NM_006015.4	1870	cct/cCTct																																																																														
CTCF	0	MSKCC	GRCh37	16	67645454	67645454	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0023137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	152	661	0	ENST00000264010.4:c.720del	p.Asn241MetfsTer9	p.N241Mfs*9	ENST00000264010	NM_006565.3	240	gTt/gt																																																																														
PLK2	0	MSKCC	GRCh37	5	57755560	57755560	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	231	775	0	ENST00000274289.3:c.227C>G	p.Pro76Arg	p.P76R	ENST00000274289	NM_006622.3	76	cCc/cGc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589578	67589579	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAATTACATGAATAT			P-0023137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	107	558	0	ENST00000274335.5:c.1344_1358dup	p.Lys448_Tyr452dup	p.K448_Y452dup	ENST00000274335		448	-/AAATTACATGAATAT																																																																														
NSD1	0	MSKCC	GRCh37	5	176720851	176720851	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	229	680	0	ENST00000439151.2:c.6482G>A	p.Trp2161Ter	p.W2161*	ENST00000439151	NM_022455.4	2161	tGg/tAg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0023153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	111	611	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	86	388	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209652	98209652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	165	770	6	ENST00000331920.6:c.3886G>A	p.Gly1296Arg	p.G1296R	ENST00000331920	NM_000264.3	1296	Gga/Aga																																																																														
BCOR	0	MSKCC	GRCh37	X	39922945	39922945	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0023153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	225	820	1	ENST00000378444.4:c.3763G>T	p.Glu1255Ter	p.E1255*	ENST00000378444	NM_001123385.1	1255	Gag/Tag																																																																														
MTOR	0	MSKCC	GRCh37	1	11303196	11303196	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	145	687	0	ENST00000361445.4:c.1387C>G	p.Leu463Val	p.L463V	ENST00000361445	NM_004958.3	463	Ctg/Gtg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120480623	120480623	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	87	465	0	ENST00000256646.2:c.3194A>G	p.Asn1065Ser	p.N1065S	ENST00000256646	NM_024408.3	1065	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0023004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	70	491	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
GATA3	0	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0023004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	158	854	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71946178	71946178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	96	900	0	ENST00000298229.2:c.2434G>A	p.Asp812Asn	p.D812N	ENST00000298229	NM_001567.3	812	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7577122	7577122	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	164	856	2	ENST00000269305.4:c.816del	p.Arg273ValfsTer72	p.R273Vfs*72	ENST00000269305	NM_001126112.2	272	gtG/gt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152092	55152092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	296	732	2	ENST00000257290.5:c.2524G>T	p.Asp842Tyr	p.D842Y	ENST00000257290	NM_006206.4	842	Gac/Tac																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443979	49443979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201623566		P-0023159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	52	1005	1	ENST00000301067.7:c.3392C>T	p.Pro1131Leu	p.P1131L	ENST00000301067	NM_003482.3	1131	cCg/cTg																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25497958	25497958	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0023159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	52	540	0	ENST00000264709.3:c.493-2A>C		p.X165_splice	ENST00000264709	NM_175629.2	165																																																																															
CXCR4	0	MSKCC	GRCh37	2	136872533	136872533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0023159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	27	370	0	ENST00000241393.3:c.965G>C	p.Arg322Thr	p.R322T	ENST00000241393	NM_003467.2	322	aGa/aCa																																																																														
PLK2	0	MSKCC	GRCh37	5	57752883	57752883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023159-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	70	577	0	ENST00000274289.3:c.1045C>G	p.His349Asp	p.H349D	ENST00000274289	NM_006622.3	349	Cat/Gat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	224	790	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	217	850	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133523	55133523	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142492533		P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	66	685	1	ENST00000257290.5:c.827C>T	p.Thr276Met	p.T276M	ENST00000257290	NM_006206.4	276	aCg/aTg																																																																														
MRE11A	0	MSKCC	GRCh37	11	94212841	94212841	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	103	529	0	ENST00000323929.3:c.401G>A	p.Gly134Glu	p.G134E	ENST00000323929	NM_005591.3	134	gGg/gAg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910458	32910458	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	211	626	0	ENST00000380152.3:c.1966A>C	p.Thr656Pro	p.T656P	ENST00000380152		656	Act/Cct																																																																														
EZH1	0	MSKCC	GRCh37	17	40854917	40854917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	170	763	1	ENST00000428826.2:c.2161G>A	p.Glu721Lys	p.E721K	ENST00000428826		721	Gaa/Aaa																																																																														
YES1	0	MSKCC	GRCh37	18	742921	742921	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	75	653	0	ENST00000314574.4:c.1057A>C	p.Lys353Gln	p.K353Q	ENST00000314574	NM_005433.3	353	Aaa/Caa																																																																														
DROSHA	0	MSKCC	GRCh37	5	31409377	31409377	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	66	676	0	ENST00000344624.3:c.3730T>C	p.Cys1244Arg	p.C1244R	ENST00000344624		1244	Tgc/Cgc																																																																														
APC	0	MSKCC	GRCh37	5	112174268	112174268	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	48	546	0	ENST00000257430.4:c.2978del	p.Lys993SerfsTer12	p.K993Sfs*12	ENST00000257430	NM_000038.5	993	Aag/ag																																																																														
APC	324	MSKCC	GRCh37	5	112175788	112175789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	105	440	0	ENST00000257430.4:c.4500_4501dup	p.Ser1501PhefsTer7	p.S1501Ffs*7	ENST00000257430	NM_000038.5	1499	-/TT																																																																														
PARK2	0	MSKCC	GRCh37	6	162622198	162622198	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	42	557	0	ENST00000366898.1:c.499A>G	p.Ser167Gly	p.S167G	ENST00000366898	NM_004562.2	167	Agc/Ggc																																																																														
PREX2	0	MSKCC	GRCh37	8	69046299	69046299	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	48	485	0	ENST00000288368.4:c.3772G>T	p.Glu1258Ter	p.E1258*	ENST00000288368	NM_024870.2	1258	Gag/Tag																																																																														
PTCH1	0	MSKCC	GRCh37	9	98242804	98242804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	51	757	0	ENST00000331920.6:c.813A>G	p.Ile271Met	p.I271M	ENST00000331920	NM_000264.3	271	atA/atG																																																																														
AR	0	MSKCC	GRCh37	X	66765635	66765635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	26	434	0	ENST00000374690.3:c.647G>A	p.Gly216Glu	p.G216E	ENST00000374690	NM_000044.3	216	gGg/gAg																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24143174	24143174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	88	647	0	ENST00000263121.7:c.406C>T	p.Pro136Ser	p.P136S	ENST00000263121	NM_003073.3	136	Ccc/Tcc																																																																														
PREX2	0	MSKCC	GRCh37	8	69129903	69129903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	20	420	1	ENST00000288368.4:c.4657G>A	p.Gly1553Arg	p.G1553R	ENST00000288368	NM_024870.2	1553	Gga/Aga																																																																														
NEGR1	0	MSKCC	GRCh37	1	72241924	72241924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	19	591	1	ENST00000357731.5:c.466G>A	p.Val156Ile	p.V156I	ENST00000357731	NM_173808.2	156	Gtc/Atc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49439704	49439704	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0022953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	43	628	0	ENST00000301067.7:c.4740del	p.Glu1581SerfsTer12	p.E1581Sfs*12	ENST00000301067	NM_003482.3	1580	ccA/cc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874710	151874710	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	51	491	1	ENST00000262189.6:c.7828C>T	p.Arg2610Ter	p.R2610*	ENST00000262189	NM_170606.2	2610	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0023068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	54	636	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	80	702	1	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575194	48575194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	37	304	0	ENST00000342988.3:c.388C>T	p.Pro130Ser	p.P130S	ENST00000342988	NM_005359.5	130	Cca/Tca																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12016621	12016621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	29	518	0	ENST00000353533.5:c.757C>T	p.Gln253Ter	p.Q253*	ENST00000353533	NM_003010.3	253	Cag/Tag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974717	21974718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0023068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	30	412	0	ENST00000304494.5:c.108_109dup	p.Leu37ArgfsTer17	p.L37Rfs*17	ENST00000304494	NM_000077.4	37	ctg/cGCtg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974717	21974718	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0023068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	30	412	0	ENST00000304494.5:c.108_109dup	p.Leu37ArgfsTer17	p.L37Rfs*17	ENST00000304494	NM_000077.4	37	ctg/cGCtg																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	353	737	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373865	118373865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	50	301	0	ENST00000534358.1:c.7258C>A	p.His2420Asn	p.H2420N	ENST00000534358	NM_005933.3	2420	Cat/Aat																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0023131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	72	634	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	12	476	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0023131-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	19	322	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	118	915	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	81	1183	0	ENST00000269305.4:c.395A>C	p.Lys132Thr	p.K132T	ENST00000269305	NM_001126112.2	132	aAg/aCg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399409	139399411	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0023101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	207	859	5	ENST00000277541.6:c.4732_4734delGTG	p.Val1578del	p.V1578del	ENST00000277541	NM_017617.3	1578	GTG/-																																																																														
PTEN	0	MSKCC	GRCh37	10	89692783	89692827	+	inframe_deletion	In_Frame_Del	DEL	TTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTT	TTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTT	-			P-0023101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	18	601	0	ENST00000371953.3:c.269_313del	p.Phe90_Phe104del	p.F90_F104del	ENST00000371953	NM_000314.4	89	ccTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTt/cct																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911484	32911484	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	86	688	0	ENST00000380152.3:c.2993del	p.Gly998ValfsTer45	p.G998Vfs*45	ENST00000380152		998	Ggt/gt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361184	66361184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	81	541	1	ENST00000273854.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000273854	NM_004439.5	330	Gag/Aag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21994261	21994261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	116	657	0	ENST00000361570.3:c.193G>A	p.Val65Met	p.V65M	ENST00000361570	NM_058195.3	65	Gtg/Atg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21994261	21994261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	116	657	0	ENST00000361570.3:c.193G>A	p.Val65Met	p.V65M	ENST00000361570	NM_058195.3	65	Gtg/Atg																																																																														
AR	0	MSKCC	GRCh37	X	66931471	66931471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023101-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	183	857	0	ENST00000374690.3:c.2113C>A	p.Leu705Ile	p.L705I	ENST00000374690	NM_000044.3	705	Ctc/Atc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			239	366	775	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			65	460	748	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056314	26056314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	152	560	0	ENST00000343677.2:c.343G>A	p.Glu115Lys	p.E115K	ENST00000343677	NM_005319.3	115	Gaa/Aaa																																																																														
RET	0	MSKCC	GRCh37	10	43606672	43606672	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			102	454	708	4	ENST00000355710.3:c.1282del	p.Glu428LysfsTer25	p.E428Kfs*25	ENST00000355710	NM_020975.4	427	gtG/gt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63545771	63545771	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			34	365	454	0	ENST00000307078.5:c.823A>T	p.Lys275Ter	p.K275*	ENST00000307078	NM_004655.3	275	Aag/Tag																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25467199	25467199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			507	147	612	0	ENST00000264709.3:c.1676G>T	p.Cys559Phe	p.C559F	ENST00000264709	NM_175629.2	559	tGc/tTc																																																																														
TOP1	0	MSKCC	GRCh37	20	39708706	39708725	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAATTTTTTTTCTCTTTAGT	CAATTTTTTTTCTCTTTAGT	-			P-0014003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			449	130	621	0	ENST00000361337.2:c.336-18_337del		p.X112_splice	ENST00000361337	NM_003286.2	112																																																																															
FAT1	0	MSKCC	GRCh37	4	187518056	187518056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			490	390	714	0	ENST00000441802.2:c.12638A>T	p.Gln4213Leu	p.Q4213L	ENST00000441802	NM_005245.3	4213	cAg/cTg																																																																														
FLT4	0	MSKCC	GRCh37	5	180053126	180053126	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			448	182	775	0	ENST00000261937.6:c.1243G>T	p.Glu415Ter	p.E415*	ENST00000261937	NM_182925.4	415	Gag/Tag																																																																														
RRAGC	0	MSKCC	GRCh37	1	39305262	39305262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1434	230	718	3	ENST00000373001.3:c.1163C>T	p.Ala388Val	p.A388V	ENST00000373001	NM_022157.3	388	gCg/gTg																																																																														
ERCC4	0	MSKCC	GRCh37	16	14026065	14026065	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			509	32	626	0	ENST00000311895.7:c.1025G>T	p.Arg342Met	p.R342M	ENST00000311895	NM_005236.2	342	aGg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112137021	112137021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014003-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	49	666	2	ENST00000257430.4:c.775C>T	p.Arg259Trp	p.R259W	ENST00000257430	NM_000038.5	259	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	234	745	4	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	182	741	3	ENST00000269305.4:c.572_574del	p.Pro191del	p.P191del	ENST00000269305	NM_001126112.2	191	cCTCag/cag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	72	870	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	113	487	2	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	81	280	1	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	86	728	5	ENST00000269305.4:c.792_794delACT	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117739	70117739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	325	862	1	ENST00000245479.2:c.210del	p.Val71CysfsTer39	p.V71Cfs*39	ENST00000245479	NM_000346.3	69	ttC/tt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178919110	178919110	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	113	402	0	ENST00000263967.3:c.595T>C	p.Ser199Pro	p.S199P	ENST00000263967	NM_006218.2	199	Tct/Cct																																																																														
TERT	0	MSKCC	GRCh37	5	1295271	1295271	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	42	605	0				ENST00000310581	NM_198253.2																																																																																
MSH3	0	MSKCC	GRCh37	5	80150077	80150077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	208	786	5	ENST00000265081.6:c.2942C>T	p.Thr981Met	p.T981M	ENST00000265081	NM_002439.4	981	aCg/aTg																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38173545	38173545	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0023022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	141	524	0	ENST00000317025.8:c.1871C>A	p.Ser624Ter	p.S624*	ENST00000317025	NM_023034.1	624	tCa/tAa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212286761	212286761	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0023026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	14	627	0	ENST00000342788.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000342788	NM_005235.2	979	Cga/Tga																																																																														
FGFR3	0	MSKCC	GRCh37	4	1801020	1801020	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	255	991	0	ENST00000260795.2:c.149T>A	p.Val50Asp	p.V50D	ENST00000260795		50	gTc/gAc																																																																														
AXL	0	MSKCC	GRCh37	19	41744482	41744482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	35	962	2	ENST00000301178.4:c.1102C>T	p.Arg368Trp	p.R368W	ENST00000301178	NM_021913.4	368	Cgg/Tgg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139410441	139410441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	68	836	1	ENST00000277541.6:c.1661G>A	p.Cys554Tyr	p.C554Y	ENST00000277541	NM_017617.3	554	tGc/tAc																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858327	27858327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	46	707	1	ENST00000359303.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000359303	NM_003535.2	82	Gac/Aac																																																																														
SPEN	0	MSKCC	GRCh37	1	16256198	16256198	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	211	553	0	ENST00000375759.3:c.3463A>T	p.Thr1155Ser	p.T1155S	ENST00000375759	NM_015001.2	1155	Act/Tct																																																																														
SPEN	0	MSKCC	GRCh37	1	16259474	16259474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	214	504	0	ENST00000375759.3:c.6739C>A	p.Leu2247Met	p.L2247M	ENST00000375759	NM_015001.2	2247	Ctg/Atg																																																																														
SDHB	0	MSKCC	GRCh37	1	17359604	17359611	+	frameshift_variant	Frame_Shift_Del	DEL	AATCTTGA	AATCTTGA	-			P-0023029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	180	664	0	ENST00000375499.3:c.230_237del	p.Ile77LysfsTer3	p.I77Kfs*3	ENST00000375499	NM_003000.2	77	aTCAAGATT/a																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267402	198267402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	207	601	0	ENST00000335508.6:c.1955G>A	p.Cys652Tyr	p.C652Y	ENST00000335508	NM_012433.2	652	tGc/tAc																																																																														
VHL	0	MSKCC	GRCh37	3	10188248	10188255	+	frameshift_variant	Frame_Shift_Del	DEL	AACCAAAC	AACCAAAC	-			P-0023029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	294	900	0	ENST00000256474.2:c.391_398del	p.Asn131Ter	p.N131*	ENST00000256474	NM_000551.3	131	AACCAAACt/t																																																																														
CARD11	0	MSKCC	GRCh37	7	2978404	2978405	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTCGTGTTCCAAGATGTCCAGGATGGCCTTGTCTGAGTCTGGGAA			P-0023029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1162	176	1108	0	ENST00000396946.4:c.925_926insTTCCCAGACTCAGACAAGGCCATCCTGGACATCTTGGAACACGACC	p.Arg309LeufsTer66	p.R309Lfs*66	ENST00000396946	NM_032415.4	309	cgc/cTTCCCAGACTCAGACAAGGCCATCCTGGACATCTTGGAACACGACCgc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8331618	8331618	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	199	576	0	ENST00000356435.5:c.5498A>C	p.Gln1833Pro	p.Q1833P	ENST00000356435		1833	cAg/cCg																																																																														
KDM5C	0	MSKCC	GRCh37	X	53225127	53225127	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	286	441	0	ENST00000375401.3:c.3091del	p.Ala1031ProfsTer24	p.A1031Pfs*24	ENST00000375401	NM_004187.3	1031	Gcc/cc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118365081	118365081	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	255	622	1	ENST00000534358.1:c.5257del	p.Ala1753ProfsTer70	p.A1753Pfs*70	ENST00000534358	NM_005933.3	1753	Gcc/cc																																																																														
POLD1	0	MSKCC	GRCh37	19	50919693	50919693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	412	1106	2	ENST00000440232.2:c.2861C>T	p.Thr954Met	p.T954M	ENST00000440232	NM_002691.3	954	aCg/aTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0023104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	67	762	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0023104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	136	550	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0023104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	136	550	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
TP53	0	MSKCC	GRCh37	17	7579400	7579400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	213	829	0	ENST00000269305.4:c.287del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	tCt/tt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	109	577	1	ENST00000342988.3:c.1529G>A	p.Gly510Glu	p.G510E	ENST00000342988	NM_005359.5	510	gGa/gAa																																																																														
AKT3	0	MSKCC	GRCh37	1	243858957	243858958	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGA			P-0023104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	28	641	1	ENST00000263826.5:c.104_107dup	p.Gly37HisfsTer4	p.G37Hfs*4	ENST00000263826	NM_005465.4	36	ata/atTCATa																																																																														
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	232	650	0	ENST00000288135.5:c.1676T>C	p.Val559Ala	p.V559A	ENST00000288135	NM_000222.2	559	gTt/gCt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0023033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	21	414	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																																																														
ROS1	0	MSKCC	GRCh37	6	117665372	117665372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	33	367	0	ENST00000368508.3:c.4375G>A	p.Ala1459Thr	p.A1459T	ENST00000368508	NM_002944.2	1459	Gcc/Acc																																																																														
CASP8	0	MSKCC	GRCh37	2	202150039	202150039	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0023033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	72	663	0	ENST00000358485.4:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000358485	NM_001080125.1	494	Cga/Tga																																																																														
CTCF	0	MSKCC	GRCh37	16	67655479	67655479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	40	501	0	ENST00000264010.4:c.1342C>T	p.Arg448Ter	p.R448*	ENST00000264010	NM_006565.3	448	Cga/Tga																																																																														
MPL	0	MSKCC	GRCh37	1	43818294	43818294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	54	762	1	ENST00000372470.3:c.1759G>A	p.Ala587Thr	p.A587T	ENST00000372470	NM_005373.2	587	Gcc/Acc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713811	30713811	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	44	709	1	ENST00000359013.4:c.1211A>T	p.Asp404Val	p.D404V	ENST00000359013	NM_001024847.2	404	gAc/gTc																																																																														
AR	0	MSKCC	GRCh37	X	66765699	66765699	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	84	1346	0	ENST00000374690.3:c.711G>T	p.Lys237Asn	p.K237N	ENST00000374690	NM_000044.3	237	aaG/aaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	251	871	2				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	257	826	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857500	9857500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	132	446	0	ENST00000330684.3:c.3901G>A	p.Glu1301Lys	p.E1301K	ENST00000330684	NM_001134407.1	1301	Gag/Aag																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024758	31024758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	228	670	0	ENST00000375687.4:c.4243C>T	p.Arg1415Ter	p.R1415*	ENST00000375687	NM_015338.5	1415	Cga/Tga																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15285048	15285048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	288	900	0	ENST00000263388.2:c.4567G>A	p.Glu1523Lys	p.E1523K	ENST00000263388	NM_000435.2	1523	Gag/Aag																																																																														
PREX2	0	MSKCC	GRCh37	8	69058566	69058566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2175	302	825	1	ENST00000288368.4:c.4210C>T	p.His1404Tyr	p.H1404Y	ENST00000288368	NM_024870.2	1404	Cat/Tat																																																																														
MGA	0	MSKCC	GRCh37	15	42041468	42041468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	227	663	0	ENST00000219905.7:c.5663C>T	p.Ser1888Phe	p.S1888F	ENST00000219905	NM_001164273.1	1888	tCc/tTc																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727442	66727442	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	188	491	0	ENST00000307102.5:c.158T>A	p.Phe53Tyr	p.F53Y	ENST00000307102	NM_002755.3	53	tTt/tAt																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9943670	9943670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	269	701	0	ENST00000330684.3:c.1271C>A	p.Pro424His	p.P424H	ENST00000330684	NM_001134407.1	424	cCc/cAc																																																																														
MSH6	0	MSKCC	GRCh37	2	48010571	48010571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	261	699	0	ENST00000234420.5:c.199C>T	p.Pro67Ser	p.P67S	ENST00000234420	NM_000179.2	67	Ccc/Tcc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266976	41266976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	160	441	0	ENST00000349496.5:c.647G>A	p.Gly216Glu	p.G216E	ENST00000349496	NM_001904.3	216	gGg/gAg																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114856	73114856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	54	58	0	ENST00000356692.5:c.1237C>T	p.Pro413Ser	p.P413S	ENST00000356692		413	Cca/Tca																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185146671	185146671	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	261	577	0	ENST00000265026.3:c.302A>G	p.Asn101Ser	p.N101S	ENST00000265026	NM_004721.4	101	aAc/aGc																																																																														
FAT1	0	MSKCC	GRCh37	4	187628151	187628151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	270	860	1	ENST00000441802.2:c.2831C>T	p.Thr944Ile	p.T944I	ENST00000441802	NM_005245.3	944	aCc/aTc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93979318	93979318	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	305	524	0	ENST00000369303.4:c.1510A>G	p.Asn504Asp	p.N504D	ENST00000369303	NM_004440.3	504	Aat/Gat																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137519344	137519344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	125	348	0	ENST00000367739.4:c.1294C>T	p.Pro432Ser	p.P432S	ENST00000367739	NM_000416.2	432	Cca/Tca																																																																														
CARD11	0	MSKCC	GRCh37	7	2956979	2956979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	299	675	1	ENST00000396946.4:c.2648C>T	p.Pro883Leu	p.P883L	ENST00000396946	NM_032415.4	883	cCc/cTc																																																																														
INHBA	0	MSKCC	GRCh37	7	41729525	41729525	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	226	662	1	ENST00000242208.4:c.1004G>A	p.Trp335Ter	p.W335*	ENST00000242208	NM_002192.2	335	tGg/tAg																																																																														
TCEB1	0	MSKCC	GRCh37	8	74868149	74868149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	166	226	0	ENST00000284811.8:c.145C>A	p.Pro49Thr	p.P49T	ENST00000284811		49	Cca/Aca																																																																														
AMER1	0	MSKCC	GRCh37	X	63410253	63410253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	225	375	0	ENST00000330258.3:c.2914C>T	p.Pro972Ser	p.P972S	ENST00000330258	NM_152424.3	972	Cct/Tct																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123480595	123480595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023032-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	235	304	0	ENST00000371139.4:c.103G>A	p.Glu35Lys	p.E35K	ENST00000371139	NM_001114937.2	35	Gag/Aag																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0023017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	510	622	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0023017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	270	931	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0023031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	149	420	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0023031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	396	1067	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
CASP8	0	MSKCC	GRCh37	2	202137620	202137620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0023031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	527	655	0	ENST00000358485.4:c.728-1G>C		p.X243_splice	ENST00000358485	NM_001080125.1	243																																																																															
ARAF	0	MSKCC	GRCh37	X	47426638	47426638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	62	747	0	ENST00000377045.4:c.883G>T	p.Gly295Trp	p.G295W	ENST00000377045	NM_001654.4	295	Ggg/Tgg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912113	32912113	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0023031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	333	856	0	ENST00000380152.3:c.3621T>A	p.Tyr1207Ter	p.Y1207*	ENST00000380152		1207	taT/taA																																																																														
MTOR	0	MSKCC	GRCh37	1	11189847	11189847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	75	784	0	ENST00000361445.4:c.5662T>C	p.Phe1888Leu	p.F1888L	ENST00000361445	NM_004958.3	1888	Ttc/Ctc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64136934	64136934	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	80	837	0	ENST00000334205.4:c.1445T>A	p.Val482Asp	p.V482D	ENST00000334205	NM_003942.2	482	gTc/gAc																																																																														
KDM5A	0	MSKCC	GRCh37	12	406310	406310	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0023034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	173	935	0	ENST00000399788.2:c.4131A>T	p.Glu1377Asp	p.E1377D	ENST00000399788	NM_001042603.1	1377	gaA/gaT																																																																														
ARID2	0	MSKCC	GRCh37	12	46243997	46243997	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0023034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	159	807	0	ENST00000334344.6:c.2091T>G	p.Asn697Lys	p.N697K	ENST00000334344	NM_152641.2	697	aaT/aaG																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457267	67457267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0023034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	108	986	0	ENST00000327367.4:c.241A>G	p.Lys81Glu	p.K81E	ENST00000327367	NM_005902.3	81	Aag/Gag																																																																														
PBRM1	0	MSKCC	GRCh37	3	52610637	52610637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0023034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	122	950	0	ENST00000394830.3:c.3536A>G	p.His1179Arg	p.H1179R	ENST00000394830	NM_018313.4	1179	cAt/cGt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967266	134967266	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	84	808	1	ENST00000398015.3:c.2608del	p.Arg870GlyfsTer9	p.R870Gfs*9	ENST00000398015	NM_004441.4	869	Ccc/cc																																																																														
KIT	0	MSKCC	GRCh37	4	55598037	55598037	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	84	349	1	ENST00000288135.5:c.2234G>T	p.Gly745Val	p.G745V	ENST00000288135	NM_000222.2	745	gGc/gTc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061833	38061850	+	inframe_deletion	In_Frame_Del	DEL	GGTGTTCATGGTCATGTA	GGTGTTCATGGTCATGTA	-			P-0023030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1145	230	1376	0	ENST00000250448.2:c.139_156delTACATGACCATGAACACC	p.Tyr47_Thr52del	p.Y47_T52del	ENST00000250448	NM_004496.3	47	TACATGACCATGAACACC/-																																																																														
CALR	0	MSKCC	GRCh37	19	13051170	13051170	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0023030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	129	521	0	ENST00000316448.5:c.607del	p.Leu203CysfsTer6	p.L203Cfs*6	ENST00000316448	NM_004343.3	202	ttC/tt																																																																														
MSH6	0	MSKCC	GRCh37	2	48032071	48032072	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCAGATGGGTTG			P-0023030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	102	337	0	ENST00000234420.5:c.3462_3473dup	p.Gln1155_Cys1158dup	p.Q1155_C1158dup	ENST00000234420	NM_000179.2	1155	gcc/gcCCAGATGGGTTGc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061225	38061231	+	protein_altering_variant	In_Frame_Del	DEL	TCGAACA	TCGAACA	G			P-0023030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	187	882	0	ENST00000250448.2:c.758_764delinsC	p.Met253_Glu255delinsThr	p.M253_E255delinsT	ENST00000250448	NM_004496.3	253	aTGTTCGAg/aCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578467	7578469	+	missense_variant	Missense_Mutation	ONP	TGC	TGC	GGG			P-0023030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	210	979	0	ENST00000269305.4:c.461_463delinsCCC	p.Gly154_Thr155delinsAlaPro	p.G154_T155delinsAP	ENST00000269305	NM_001126112.2	154	gGCAcc/gCCCcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0023108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	53	993	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0023108-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	47	921	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	745	1100	0	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578483	7578483	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	148	1060	1	ENST00000269305.4:c.447del	p.Thr150HisfsTer20	p.T150Hfs*20	ENST00000269305	NM_001126112.2	149	tcC/tc																																																																														
SMO	0	MSKCC	GRCh37	7	128850879	128850879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	52	920	0	ENST00000249373.3:c.1726C>T	p.Arg576Trp	p.R576W	ENST00000249373	NM_005631.4	576	Cgg/Tgg																																																																														
TBX3	0	MSKCC	GRCh37	12	115120951	115120951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	81	749	0	ENST00000257566.3:c.55C>T	p.Pro19Ser	p.P19S	ENST00000257566	NM_016569.3	19	Ccg/Tcg																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39567832	39567832	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	31	486	0	ENST00000262039.4:c.588G>T	p.Leu196Phe	p.L196F	ENST00000262039	NM_002647.2	196	ttG/ttT																																																																														
ATR	0	MSKCC	GRCh37	3	142279235	142279235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	144	838	0	ENST00000350721.4:c.1411G>A	p.Glu471Lys	p.E471K	ENST00000350721	NM_001184.3	471	Gaa/Aaa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32183016	32183016	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs8192566		P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	37	861	4	ENST00000375023.3:c.2008G>A	p.Gly670Arg	p.G670R	ENST00000375023	NM_004557.3	670	Ggg/Agg																																																																														
RXRA	0	MSKCC	GRCh37	9	137293660	137293660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	51	1147	0	ENST00000481739.1:c.211C>T	p.Pro71Ser	p.P71S	ENST00000481739	NM_002957.4	71	Ccc/Tcc																																																																														
CRLF2	0	MSKCC	GRCh37	X	1325345	1325345	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0023023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	50	666	1	ENST00000381566.1:c.330T>A	p.Ser110Arg	p.S110R	ENST00000381566		110	agT/agA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0023007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	57	561	1				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7579566	7579584	+	frameshift_variant	Frame_Shift_Del	DEL	CCATTGCTTGGGACGGCAA	CCATTGCTTGGGACGGCAA	-			P-0023007-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	58	834	0	ENST00000269305.4:c.103_121del	p.Leu35MetfsTer3	p.L35Mfs*3	ENST00000269305	NM_001126112.2	35	TTGCCGTCCCAAGCAATGGat/at																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0022728-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			268	197	440	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022728-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			143	450	954	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214879	36214879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022728-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			217	461	1109	0	ENST00000222270.7:c.3305C>T	p.Ala1102Val	p.A1102V	ENST00000222270	NM_014727.1	1102	gCt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	186	730	7	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	120	699	1	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt																																																																														
JUN	0	MSKCC	GRCh37	1	59248408	59248409	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0022945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	138	421	5	ENST00000371222.2:c.333_334dup	p.Glu112AlafsTer37	p.E112Afs*37	ENST00000371222	NM_002228.3	112	gag/gCGag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346492	89346493	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTTCAC			P-0022945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	270	756	2	ENST00000301030.4:c.6452_6457dup	p.Gly2151_Glu2152dup	p.G2151_E2152dup	ENST00000301030	NM_001256183.1	2151	gcg/gGTGAAGcg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41265933	41266400	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTA	AATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTA	-			P-0022945-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	79	55	2	ENST00000349496.5:c.14-80_242-41del		p.X5_splice	ENST00000349496	NM_001904.3	5																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	154	759	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	233	763	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	175	420	2	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																																																														
PTPRS	0	MSKCC	GRCh37	19	5273548	5273548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	274	690	2	ENST00000357368.4:c.284C>T	p.Pro95Leu	p.P95L	ENST00000357368	NM_002850.3	95	cCg/cTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	61	754	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	92	897	2	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
BBC3	0	MSKCC	GRCh37	19	47729829	47729829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	73	988	0	ENST00000449228.1:c.560G>T	p.Arg187Leu	p.R187L	ENST00000449228	NM_001127240.2	187	cGa/cTa																																																																														
TERT	0	MSKCC	GRCh37	5	1294052	1294052	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	89	1253	1	ENST00000310581.5:c.949T>A	p.Trp317Arg	p.W317R	ENST00000310581	NM_198253.2	317	Tgg/Agg																																																																														
APC	0	MSKCC	GRCh37	5	112175689	112175693	+	stop_gained,protein_altering_variant	Nonsense_Mutation	DEL	ACCTA	ACCTA	CT			P-0022957-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	70	406	1	ENST00000257430.4:c.4398_4402delinsCT	p.Pro1467_Lys1468delinsTer	p.P1467_K1468delins*	ENST00000257430	NM_000038.5	1466	ggACCTAag/ggCTag																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7979620	7979620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	51	697	1	ENST00000319144.4:c.1405C>T	p.Arg469Trp	p.R469W	ENST00000319144	NM_001139.2	469	Cgg/Tgg																																																																														
RNF43	0	MSKCC	GRCh37	17	56435065	56435065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	52	724	0	ENST00000407977.2:c.2072C>G	p.Pro691Arg	p.P691R	ENST00000407977		691	cCt/cGt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	34	775	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
NCOA3	0	MSKCC	GRCh37	20	46268525	46268525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199688314		P-0022917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	39	417	0	ENST00000371998.3:c.2912C>T	p.Ala971Val	p.A971V	ENST00000371998		971	gCg/gTg																																																																														
APC	0	MSKCC	GRCh37	5	112111420	112111420	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022917-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	19	361	0	ENST00000257430.4:c.518del	p.Pro173LeufsTer2	p.P173Lfs*2	ENST00000257430	NM_000038.5	173	Cct/ct																																																																														
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	173	870	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15827390	15827390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	133	301	0	ENST00000307771.7:c.506G>A	p.Arg169Gln	p.R169Q	ENST00000307771	NM_005089.3	169	cGa/cAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	82	813	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	165	812	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	175	631	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	175	631	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	175	631	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
PRKD1	0	MSKCC	GRCh37	14	30098287	30098287	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	93	741	0	ENST00000331968.5:c.1685T>A	p.Val562Glu	p.V562E	ENST00000331968	NM_002742.2	562	gTg/gAg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259216	89259216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	49	517	0	ENST00000336596.2:c.360C>A	p.Phe120Leu	p.F120L	ENST00000336596	NM_005233.5	120	ttC/ttA																																																																														
KDM6A	0	MSKCC	GRCh37	X	44937752	44937752	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0022946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	91	855	0	ENST00000377967.4:c.2938+2T>G		p.X980_splice	ENST00000377967	NM_021140.2	980																																																																															
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	386	714	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210451	2210451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	150	756	3	ENST00000398665.3:c.1058C>T	p.Ala353Val	p.A353V	ENST00000398665	NM_032482.2	353	gCg/gTg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99500637	99500637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200539075		P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	186	465	1	ENST00000268035.6:c.4070G>A	p.Arg1357Gln	p.R1357Q	ENST00000268035	NM_000875.3	1357	cGg/cAg																																																																														
BLM	0	MSKCC	GRCh37	15	91306247	91306247	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	79	626	0	ENST00000355112.3:c.1934A>G	p.Gln645Arg	p.Q645R	ENST00000355112	NM_000057.2	645	cAa/cGa																																																																														
STAT3	0	MSKCC	GRCh37	17	40486041	40486041	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	276	646	0	ENST00000264657.5:c.824T>C	p.Leu275Pro	p.L275P	ENST00000264657	NM_139276.2	275	cTt/cCt																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804385	46804386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	102	481	0	ENST00000290295.7:c.621dup	p.Pro208SerfsTer2	p.P208Sfs*2	ENST00000290295	NM_006361.5	207	-/T																																																																														
APC	0	MSKCC	GRCh37	5	112155043	112155043	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	205	474	0	ENST00000257430.4:c.1312+2T>G		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																															
TCF7L2	0	MSKCC	GRCh37	10	114711033	114711034	+	splice_donor_variant	Splice_Site	DNP	GT	GT	CA			P-0022916-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	85	311	0	ENST00000543371.1:c.256+1_256+2delinsCA		p.X86_splice	ENST00000543371	NM_001198531.1	86																																																																															
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0022977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	14	370	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																																																														
ATRX	0	MSKCC	GRCh37	X	76855029	76855029	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	16	559	4	ENST00000373344.5:c.5807A>G	p.Lys1936Arg	p.K1936R	ENST00000373344	NM_000489.3	1936	aAg/aGg																																																																														
MLH1	0	MSKCC	GRCh37	3	37045935	37045935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	32	503	0	ENST00000231790.2:c.350C>T	p.Thr117Met	p.T117M	ENST00000231790	NM_000249.3	117	aCg/aTg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435114	110435114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	187	1085	1	ENST00000375856.3:c.3287C>T	p.Ala1096Val	p.A1096V	ENST00000375856	NM_003749.2	1096	gCc/gTc																																																																														
ETV6	0	MSKCC	GRCh37	12	11992187	11992187	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	151	733	0	ENST00000396373.4:c.277G>C	p.Ala93Pro	p.A93P	ENST00000396373	NM_001987.4	93	Gct/Cct																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873684	35873684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	218	827	0	ENST00000216797.5:c.167C>G	p.Pro56Arg	p.P56R	ENST00000216797	NM_020529.2	56	cCg/cGg																																																																														
CDH1	0	MSKCC	GRCh37	16	68847298	68847369	+	inframe_deletion	In_Frame_Del	DEL	CAGCGTGGGAGGCTGTATACACCATATTGAATGATGATGGTGGACAATTTGTCGTCACCACAAATCCAGTGA	CAGCGTGGGAGGCTGTATACACCATATTGAATGATGATGGTGGACAATTTGTCGTCACCACAAATCCAGTGA	-			P-0022920-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	59	891	0	ENST00000261769.5:c.1220_1291del	p.Pro407_Asn431delinsHis	p.P407_N431delinsH	ENST00000261769	NM_004360.3	407	cCAGCGTGGGAGGCTGTATACACCATATTGAATGATGATGGTGGACAATTTGTCGTCACCACAAATCCAGTGAac/cac																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0021665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	39	821	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0021665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	81	913	2	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	91	1072	2	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	86	579	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																																																														
EPHB1	0	MSKCC	GRCh37	3	134960136	134960136	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	37	924	0	ENST00000398015.3:c.2493A>C	p.Gln831His	p.Q831H	ENST00000398015	NM_004441.4	831	caA/caC																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0021665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	45	657	1	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																																																														
FANCA	0	MSKCC	GRCh37	16	89849297	89849297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	64	949	0	ENST00000389301.3:c.1596G>C	p.Glu532Asp	p.E532D	ENST00000389301	NM_000135.2	532	gaG/gaC																																																																														
STAT3	0	MSKCC	GRCh37	17	40474404	40474404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	43	903	0	ENST00000264657.5:c.1997T>C	p.Leu666Pro	p.L666P	ENST00000264657	NM_139276.2	666	cTg/cCg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46256493	46256493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	62	429	0	ENST00000371998.3:c.721G>A	p.Asp241Asn	p.D241N	ENST00000371998		241	Gat/Aat																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426790	121426790	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201095611		P-0022952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	81	577	5	ENST00000257555.6:c.481G>A	p.Ala161Thr	p.A161T	ENST00000257555		161	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7579317	7579317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	163	622	0	ENST00000269305.4:c.370T>C	p.Cys124Arg	p.C124R	ENST00000269305	NM_001126112.2	124	Tgc/Cgc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971115	21971115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	120	466	0	ENST00000361570.3:c.409C>T	p.Arg137Cys	p.R137C	ENST00000361570	NM_058195.3	137	Cgt/Tgt																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971115	21971115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	120	466	0	ENST00000361570.3:c.409C>T	p.Arg137Cys	p.R137C	ENST00000361570	NM_058195.3	137	Cgt/Tgt																																																																														
MGA	0	MSKCC	GRCh37	15	42003043	42003043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	178	900	0	ENST00000219905.7:c.2580G>C	p.Lys860Asn	p.K860N	ENST00000219905	NM_001164273.1	860	aaG/aaC																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911655	134911655	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	98	408	1	ENST00000398015.3:c.2120C>A	p.Ser707Tyr	p.S707Y	ENST00000398015	NM_004441.4	707	tCt/tAt																																																																														
SOX2	0	MSKCC	GRCh37	3	181430467	181430467	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	187	557	0	ENST00000325404.1:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000325404	NM_003106.3	107	Gat/Tat																																																																														
EPHA5	0	MSKCC	GRCh37	4	66509083	66509083	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0022952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	36	459	0	ENST00000273854.3:c.244G>C	p.Gly82Arg	p.G82R	ENST00000273854	NM_004439.5	82	Ggg/Cgg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509352	106509352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	49	624	0	ENST00000359195.3:c.1346C>A	p.Ser449Tyr	p.S449Y	ENST00000359195	NM_002649.2	449	tCc/tAc																																																																														
TSC1	0	MSKCC	GRCh37	9	135772071	135772071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	59	503	1	ENST00000298552.3:c.3046G>A	p.Gly1016Ser	p.G1016S	ENST00000298552	NM_001162426.1	1016	Ggt/Agt																																																																														
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	138	917	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
CDK4	0	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	74	567	0	ENST00000257904.6:c.71G>A	p.Arg24His	p.R24H	ENST00000257904	NM_000075.3	24	cGt/cAt																																																																														
NF2	0	MSKCC	GRCh37	22	30054182	30054182	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	53	459	0	ENST00000338641.4:c.604G>T	p.Glu202Ter	p.E202*	ENST00000338641	NM_000268.3	202	Gaa/Taa																																																																														
POLE	0	MSKCC	GRCh37	12	133253238	133253238	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	54	634	0	ENST00000320574.5:c.803A>C	p.Asp268Ala	p.D268A	ENST00000320574	NM_006231.2	268	gAc/gCc																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7984250	7984250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	27	692	0	ENST00000319144.4:c.479C>T	p.Pro160Leu	p.P160L	ENST00000319144	NM_001139.2	160	cCc/cTc																																																																														
NF1	0	MSKCC	GRCh37	17	29563013	29563014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	43	566	1	ENST00000358273.4:c.3948_3949insA	p.Val1317SerfsTer2	p.V1317Sfs*2	ENST00000358273	NM_001042492.2	1316	-/A																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602939	10602939	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	78	831	1	ENST00000171111.5:c.640-1G>T		p.X214_splice	ENST00000171111	NM_203500.1	214																																																																															
RBM10	0	MSKCC	GRCh37	X	47039429	47039429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	40	319	0	ENST00000329236.7:c.821C>G	p.Ser274Cys	p.S274C	ENST00000329236	NM_001204466.1	274	tCc/tGc																																																																														
STAG2	0	MSKCC	GRCh37	X	123210275	123210275	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	24	333	0	ENST00000218089.9:c.2627T>G	p.Val876Gly	p.V876G	ENST00000218089	NM_001042749.1	876	gTg/gGg																																																																														
STAG2	0	MSKCC	GRCh37	X	123210277	123210277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	23	329	1	ENST00000218089.9:c.2629G>T	p.Val877Leu	p.V877L	ENST00000218089	NM_001042749.1	877	Gtg/Ttg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	2603	793	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	249	893	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15289639	15289639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	117	969	0	ENST00000263388.2:c.3832G>A	p.Ala1278Thr	p.A1278T	ENST00000263388	NM_000435.2	1278	Gcc/Acc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176518695	176518695	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	439	769	0	ENST00000292408.4:c.613C>T	p.Gln205Ter	p.Q205*	ENST00000292408	NM_213647.1	205	Cag/Tag																																																																														
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	42	943	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341817	8341817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	19	957	1	ENST00000356435.5:c.4823C>T	p.Ala1608Val	p.A1608V	ENST00000356435		1608	gCa/gTa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600332	10600332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022923-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	53	875	1	ENST00000171111.5:c.1523G>A	p.Ser508Asn	p.S508N	ENST00000171111	NM_203500.1	508	aGc/aAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	39	685	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577026	7577026	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	133	783	2	ENST00000269305.4:c.912del	p.Lys305SerfsTer40	p.K305Sfs*40	ENST00000269305	NM_001126112.2	304	acT/ac																																																																														
MALT1	0	MSKCC	GRCh37	18	56376638	56376638	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	74	510	0	ENST00000348428.3:c.678G>C	p.Lys226Asn	p.K226N	ENST00000348428	NM_006785.3	226	aaG/aaC																																																																														
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	492	774	1	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610382	10610382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	453	884	0	ENST00000171111.5:c.328A>G	p.Met110Val	p.M110V	ENST00000171111	NM_203500.1	110	Atg/Gtg																																																																														
STK11	0	MSKCC	GRCh37	19	1219321	1219321	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	391	708	0	ENST00000326873.7:c.375-2A>T		p.X125_splice	ENST00000326873	NM_000455.4	125																																																																															
AKT3	0	MSKCC	GRCh37	1	243777010	243777010	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	489	710	0	ENST00000263826.5:c.659G>C	p.Arg220Pro	p.R220P	ENST00000263826	NM_005465.4	220	cGt/cCt																																																																														
FAT1	0	MSKCC	GRCh37	4	187628853	187628853	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	200	730	0	ENST00000441802.2:c.2129A>G	p.Asn710Ser	p.N710S	ENST00000441802	NM_005245.3	710	aAt/aGt																																																																														
BRAF	0	MSKCC	GRCh37	7	140453135	140453136	+	missense_variant	Missense_Mutation	DNP	CA	CA	TT			P-0022935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	60	645	0	ENST00000288602.6:c.1799_1800delTGinsAA	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTG/gAA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	62	742	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	76	718	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120812	94120812	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200883289		P-0022990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	33	666	0	ENST00000369303.4:c.239A>G	p.Asn80Ser	p.N80S	ENST00000369303	NM_004440.3	80	aAc/aGc																																																																														
STAG2	0	MSKCC	GRCh37	X	123210302	123210302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	60	266	0	ENST00000218089.9:c.2654T>C	p.Ile885Thr	p.I885T	ENST00000218089	NM_001042749.1	885	aTc/aCc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			65	261	341	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0022737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	654	727	3	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																														
RB1	5925	MSKCC	GRCh37	13	48916840	48916841	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0022737-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	434	376	0	ENST00000267163.4:c.371_372del	p.Ile124ArgfsTer6	p.I124Rfs*6	ENST00000267163	NM_000321.2	124	ATa/a																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	34	622	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	54	677	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0022980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	52	671	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
ETV1	0	MSKCC	GRCh37	7	13935499	13935499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	33	354	0	ENST00000405192.2:c.1357G>A	p.Val453Met	p.V453M	ENST00000405192	NM_001163147.1	453	Gtg/Atg																																																																														
PREX2	0	MSKCC	GRCh37	8	68864719	68864719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	41	614	0	ENST00000288368.4:c.90G>T	p.Glu30Asp	p.E30D	ENST00000288368	NM_024870.2	30	gaG/gaT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521543	8521543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	57	563	0	ENST00000356435.5:c.695G>A	p.Arg232His	p.R232H	ENST00000356435		232	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	255	954	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
RARA	0	MSKCC	GRCh37	17	38510648	38510648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	2751	1140	0	ENST00000254066.5:c.902G>A	p.Gly301Asp	p.G301D	ENST00000254066	NM_000964.3	301	gGc/gAc																																																																														
DUSP4	0	MSKCC	GRCh37	8	29197761	29197762	+	splice_acceptor_variant	Splice_Site	INS	-	-	TGTA			P-0022882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			986	158	1215	0	ENST00000240100.2:c.434-5_434-2dup		p.X145_splice	ENST00000240100	NM_001394.6	145																																																																															
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	27	647	1	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	79	702	1				ENST00000310581	NM_198253.2																																																																																
TSHR	0	MSKCC	GRCh37	14	81609612	81609612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	40	640	1	ENST00000298171.2:c.1210G>A	p.Glu404Lys	p.E404K	ENST00000298171	NM_000369.2	404	Gag/Aag																																																																														
ARID2	0	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	22	545	0	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																																																														
ASXL2	0	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	13	656	2	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																																																														
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	41	580	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566827	212566827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	18	332	0	ENST00000342788.4:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000342788	NM_005235.2	452	Gaa/Aaa																																																																														
PMS2	0	MSKCC	GRCh37	7	6031649	6031649	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs200640585		P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	37	656	0	ENST00000265849.7:c.943C>T	p.Arg315Ter	p.R315*	ENST00000265849	NM_000535.5	315	Cga/Tga																																																																														
ALK	0	MSKCC	GRCh37	2	29754827	29754827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	63	523	1	ENST00000389048.3:c.1108G>A	p.Glu370Lys	p.E370K	ENST00000389048	NM_004304.4	370	Gag/Aag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499706	8499706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	38	618	0	ENST00000356435.5:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000356435		755	Gaa/Aaa																																																																														
MITF	0	MSKCC	GRCh37	3	70005680	70005680	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	13	495	0	ENST00000352241.4:c.1012C>T	p.Pro338Ser	p.P338S	ENST00000352241	NM_198159.2	338	Cca/Tca																																																																														
ERCC3	0	MSKCC	GRCh37	2	128051208	128051208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	109	759	0	ENST00000285398.2:c.115C>T	p.Pro39Ser	p.P39S	ENST00000285398	NM_000122.1	39	Ccc/Tcc																																																																														
FUBP1	0	MSKCC	GRCh37	1	78430866	78430866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	31	664	1	ENST00000370768.2:c.523C>T	p.Pro175Ser	p.P175S	ENST00000370768	NM_003902.3	175	Cct/Tct																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851411	63851411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	59	661	1	ENST00000279873.7:c.2189C>T	p.Ser730Phe	p.S730F	ENST00000279873	NM_032199.2	730	tCc/tTc																																																																														
TET1	0	MSKCC	GRCh37	10	70332813	70332813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	42	705	0	ENST00000373644.4:c.718C>T	p.Pro240Ser	p.P240S	ENST00000373644	NM_030625.2	240	Cca/Tca																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344714	118344714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	24	507	0	ENST00000534358.1:c.2840C>T	p.Ser947Phe	p.S947F	ENST00000534358	NM_005933.3	947	tCt/tTt																																																																														
KMT2A	0	MSKCC	GRCh37	11	118361912	118361955	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AAACTTCTGCCCTCTCTGTGACAAATGTTATGATGATGATGACT	AAACTTCTGCCCTCTCTGTGACAAATGTTATGATGATGATGACT	-			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	28	252	0	ENST00000534358.1:c.4699_4742del	p.Asn1567Ter	p.N1567*	ENST00000534358	NM_005933.3	1566	ggAAACTTCTGCCCTCTCTGTGACAAATGTTATGATGATGATGACTat/ggat																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18793420	18793420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	17	619	0	ENST00000266497.5:c.4117C>T	p.Pro1373Ser	p.P1373S	ENST00000266497		1373	Ccc/Tcc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420991	49420992	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	58	540	1	ENST00000301067.7:c.14757_14758delinsTT	p.Pro4920Ser	p.P4920S	ENST00000301067	NM_003482.3	4919	tcCCcc/tcTTcc																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434113	121434113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	70	761	1	ENST00000257555.6:c.1004C>T	p.Ser335Leu	p.S335L	ENST00000257555		335	tCa/tTa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32929302	32929302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	13	610	0	ENST00000380152.3:c.7312G>A	p.Asp2438Asn	p.D2438N	ENST00000380152		2438	Gat/Aat																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868589	37868589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	68	641	0	ENST00000269571.5:c.1036G>C	p.Gly346Arg	p.G346R	ENST00000269571		346	Ggc/Cgc																																																																														
JAK3	0	MSKCC	GRCh37	19	17945732	17945732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	87	753	0	ENST00000458235.1:c.2128G>A	p.Gly710Ser	p.G710S	ENST00000458235	NM_000215.3	710	Ggc/Agc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210905	36210907	+	frameshift_variant	Frame_Shift_Del	DEL	CTC	CTC	AT			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	98	842	5	ENST00000222270.7:c.656_658delinsAT	p.Ser219TyrfsTer20	p.S219Yfs*20	ENST00000222270	NM_014727.1	219	tCTCgg/tATgg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36222961	36222961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	104	1027	0	ENST00000222270.7:c.5590C>T	p.Arg1864Ter	p.R1864*	ENST00000222270	NM_014727.1	1864	Cga/Tga																																																																														
AKT2	0	MSKCC	GRCh37	19	40762859	40762859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	85	681	0	ENST00000392038.2:c.149C>T	p.Pro50Leu	p.P50L	ENST00000392038	NM_001626.4	50	cCc/cTc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530166	212530166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	16	483	0	ENST00000342788.4:c.1753G>A	p.Asp585Asn	p.D585N	ENST00000342788	NM_005235.2	585	Gat/Aat																																																																														
PAK7	0	MSKCC	GRCh37	20	9525058	9525058	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	28	643	1	ENST00000353224.5:c.1827G>A	p.Trp609Ter	p.W609*	ENST00000353224	NM_177990.2	609	tgG/tgA																																																																														
MLH1	0	MSKCC	GRCh37	3	37070415	37070415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	29	316	0	ENST00000231790.2:c.1550G>A	p.Gly517Glu	p.G517E	ENST00000231790	NM_000249.3	517	gGa/gAa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71008496	71008496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	34	420	1	ENST00000318789.4:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000318789	NM_032682.5	646	Gaa/Aaa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916788	178916788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	16	649	0	ENST00000263967.3:c.175C>T	p.His59Tyr	p.H59Y	ENST00000263967	NM_006218.2	59	Cat/Tat																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41748119	41748119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	17	259	2	ENST00000226382.2:c.650G>A	p.Gly217Glu	p.G217E	ENST00000226382	NM_003924.3	217	gGg/gAg																																																																														
TERT	0	MSKCC	GRCh37	5	1278899	1278899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	46	669	2	ENST00000310581.5:c.2143G>A	p.Gly715Ser	p.G715S	ENST00000310581	NM_198253.2	715	Ggc/Agc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31409229	31409229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	26	610	2	ENST00000344624.3:c.3788C>T	p.Ser1263Phe	p.S1263F	ENST00000344624		1263	tCc/tTc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31468104	31468104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	23	726	0	ENST00000344624.3:c.2308C>T	p.Pro770Ser	p.P770S	ENST00000344624		770	Ccg/Tcg																																																																														
LATS1	0	MSKCC	GRCh37	6	150001518	150001518	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	11	720	0	ENST00000253339.5:c.2086A>G	p.Lys696Glu	p.K696E	ENST00000253339		696	Aaa/Gaa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157405960	157405960	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	52	561	0	ENST00000346085.5:c.2204delC	p.Pro735HisfsTer10	p.P735Hfs*10	ENST00000346085	NM_020732.3	734	ggC/gg																																																																														
PARK2	0	MSKCC	GRCh37	6	162683691	162683691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	56	672	0	ENST00000366898.1:c.278G>A	p.Gly93Glu	p.G93E	ENST00000366898	NM_004562.2	93	gGa/gAa																																																																														
EGFR	0	MSKCC	GRCh37	7	55221711	55221711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	8	450	0	ENST00000275493.2:c.755G>T	p.Arg252Leu	p.R252L	ENST00000275493	NM_005228.3	252	cGc/cTc																																																																														
SOX17	0	MSKCC	GRCh37	8	55371824	55371824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	43	360	1	ENST00000297316.4:c.514G>A	p.Gly172Ser	p.G172S	ENST00000297316	NM_022454.3	172	Ggc/Agc																																																																														
JAK2	0	MSKCC	GRCh37	9	5054594	5054594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	11	405	0	ENST00000381652.3:c.646G>A	p.Ala216Thr	p.A216T	ENST00000381652	NM_004972.3	216	Gca/Aca																																																																														
TEK	0	MSKCC	GRCh37	9	27169591	27169591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	58	878	1	ENST00000380036.4:c.592C>T	p.Leu198Phe	p.L198F	ENST00000380036	NM_000459.3	198	Ctc/Ttc																																																																														
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	282	782	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																																																														
INPPL1	0	MSKCC	GRCh37	11	71949342	71949342	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	141	756	0	ENST00000298229.2:c.3722T>A	p.Val1241Glu	p.V1241E	ENST00000298229	NM_001567.3	1241	gTg/gAg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831860	72831860	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	327	950	0	ENST00000268489.5:c.4721del	p.Lys1574ArgfsTer42	p.K1574Rfs*42	ENST00000268489	NM_006885.3	1574	aAg/ag																																																																														
PTCH1	0	MSKCC	GRCh37	9	98224163	98224163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138154222		P-0022688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	143	366	2	ENST00000331920.6:c.2678G>A	p.Arg893His	p.R893H	ENST00000331920	NM_000264.3	893	cGc/cAc																																																																														
ATM	0	MSKCC	GRCh37	11	108122722	108122722	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	465	675	4	ENST00000278616.4:c.1766T>A	p.Leu589Ter	p.L589*	ENST00000278616	NM_000051.3	589	tTa/tAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577044	7577044	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	427	947	1	ENST00000269305.4:c.894del	p.Glu298AspfsTer47	p.E298Dfs*47	ENST00000269305	NM_001126112.2	298	gaG/ga																																																																														
MEF2B	0	MSKCC	GRCh37	19	19260219	19260219	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	313	889	0	ENST00000162023.5:c.74A>C	p.Lys25Thr	p.K25T	ENST00000162023		25	aAg/aCg																																																																														
SETD2	0	MSKCC	GRCh37	3	47098615	47098615	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	46	822	0	ENST00000409792.3:c.6659del	p.Pro2220LeufsTer28	p.P2220Lfs*28	ENST00000409792	NM_014159.6	2220	cCt/ct																																																																														
BAP1	0	MSKCC	GRCh37	3	52442507	52442508	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0022888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	75	872	0	ENST00000460680.1:c.237_238del	p.Met80ValfsTer45	p.M80Vfs*45	ENST00000460680	NM_004656.3	79	aaCAtg/aatg																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	32	672	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881414	37881414	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	174	716	0	ENST00000269571.5:c.2606T>G	p.Leu869Arg	p.L869R	ENST00000269571		869	cTg/cGg																																																																														
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	9	677	5	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																																																														
CARD11	0	MSKCC	GRCh37	7	2983984	2983984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	38	832	0	ENST00000396946.4:c.546G>C	p.Lys182Asn	p.K182N	ENST00000396946	NM_032415.4	182	aaG/aaC																																																																														
MEN1	0	MSKCC	GRCh37	11	64577260	64577260	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	24	679	0	ENST00000337652.1:c.322C>G	p.Arg108Gly	p.R108G	ENST00000337652	NM_130803.2	108	Cga/Gga																																																																														
FGF3	0	MSKCC	GRCh37	11	69625360	69625360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	27	717	1	ENST00000334134.2:c.433C>T	p.Arg145Trp	p.R145W	ENST00000334134	NM_005247.2	145	Cgg/Tgg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434141	49434141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	26	699	2	ENST00000301067.7:c.7412G>A	p.Arg2471Gln	p.R2471Q	ENST00000301067	NM_003482.3	2471	cGa/cAa																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515078	103515078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	13	291	0	ENST00000355739.4:c.1579C>G	p.Pro527Ala	p.P527A	ENST00000355739	NM_000123.3	527	Cca/Gca																																																																														
CDH1	0	MSKCC	GRCh37	16	68842359	68842360	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	118	577	0	ENST00000261769.5:c.421dup	p.Thr141AsnfsTer27	p.T141Nfs*27	ENST00000261769	NM_004360.3	140	-/A																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244517	41244517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	34	696	1	ENST00000357654.3:c.3031G>A	p.Glu1011Lys	p.E1011K	ENST00000357654	NM_007294.3	1011	Gaa/Aaa																																																																														
DNMT1	0	MSKCC	GRCh37	19	10259621	10259621	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	22	679	0	ENST00000340748.4:c.2611C>G	p.Gln871Glu	p.Q871E	ENST00000340748		871	Caa/Gaa																																																																														
ASXL2	0	MSKCC	GRCh37	2	25973247	25973247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	19	438	0	ENST00000435504.4:c.1178C>A	p.Thr393Lys	p.T393K	ENST00000435504		393	aCa/aAa																																																																														
TAP1	0	MSKCC	GRCh37	6	32815761	32815761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	109	783	0	ENST00000354258.4:c.1855G>A	p.Gly619Arg	p.G619R	ENST00000354258	NM_000593.5	619	Ggg/Agg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874290	151874292	+	frameshift_variant	Frame_Shift_Ins	INS	TTA	TTA	ATCCAGG			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	93	484	1	ENST00000262189.6:c.8246_8248delinsCCTGGAT	p.Leu2749SerfsTer8	p.L2749Sfs*8	ENST00000262189	NM_170606.2	2749	tTAAgg/tCCTGGATgg																																																																														
GNAQ	0	MSKCC	GRCh37	9	80430635	80430635	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	25	346	0	ENST00000286548.4:c.373G>C	p.Glu125Gln	p.E125Q	ENST00000286548	NM_002072.3	125	Gag/Cag																																																																														
GATA1	0	MSKCC	GRCh37	X	48650302	48650302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	29	701	0	ENST00000376670.3:c.272C>T	p.Ser91Leu	p.S91L	ENST00000376670	NM_002049.3	91	tCa/tTa																																																																														
ATRX	0	MSKCC	GRCh37	X	76907768	76907768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	31	571	0	ENST00000373344.5:c.4393G>A	p.Asp1465Asn	p.D1465N	ENST00000373344	NM_000489.3	1465	Gat/Aat																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	349	731	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	568	846	2				ENST00000310581	NM_198253.2																																																																																
H3F3A	0	MSKCC	GRCh37	1	226253448	226253448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	40	187	0	ENST00000366813.1:c.220G>A	p.Glu74Lys	p.E74K	ENST00000366813		74	Gaa/Aaa																																																																														
ARID2	0	MSKCC	GRCh37	12	46245118	46245118	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	134	745	0	ENST00000334344.6:c.3212C>G	p.Ser1071Ter	p.S1071*	ENST00000334344	NM_152641.2	1071	tCa/tGa																																																																														
ARID2	0	MSKCC	GRCh37	12	46245192	46245192	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	140	683	0	ENST00000334344.6:c.3286C>G	p.Gln1096Glu	p.Q1096E	ENST00000334344	NM_152641.2	1096	Cag/Gag																																																																														
SLX4	0	MSKCC	GRCh37	16	3640117	3640117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	379	1497	0	ENST00000294008.3:c.3522T>G	p.Asp1174Glu	p.D1174E	ENST00000294008	NM_032444.2	1174	gaT/gaG																																																																														
JAK3	0	MSKCC	GRCh37	19	17945726	17945726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	212	1082	1	ENST00000458235.1:c.2134G>A	p.Gly712Ser	p.G712S	ENST00000458235	NM_000215.3	712	Ggc/Agc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71096244	71096244	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0022887-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	226	260	0	ENST00000318789.4:c.513A>C	p.Gln171His	p.Q171H	ENST00000318789	NM_032682.5	171	caA/caC																																																																														
MST1	0	MSKCC	GRCh37	3	49724798	49724798	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G	rs138710044		P-0022677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	10	103	0	ENST00000449682.2:c.469A>C	p.Lys157Gln	p.K157Q	ENST00000449682	NM_020998.3	157	Aag/Cag																																																																														
RB1	0	MSKCC	GRCh37	13	48951081	48951081	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	205	362	0	ENST00000267163.4:c.1243del	p.Ile415TyrfsTer2	p.I415Yfs*2	ENST00000267163	NM_000321.2	415	Ata/ta																																																																														
TP53	0	MSKCC	GRCh37	17	7578467	7578480	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCGGGCGGGGGT	TGCCGGGCGGGGGT	GCGGGGGGC			P-0022677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	354	1011	6	ENST00000269305.4:c.450_463delinsGCCCCCCGC	p.Pro153AlafsTer26	p.P153Afs*26	ENST00000269305	NM_001126112.2	150	acACCCCCGCCCGGCAcc/acGCCCCCCGCcc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38173510	38173510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	327	699	0	ENST00000317025.8:c.1906G>T	p.Ala636Ser	p.A636S	ENST00000317025	NM_023034.1	636	Gcc/Tcc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66270129	66270129	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	68	389	0	ENST00000273854.3:c.1753T>A	p.Leu585Met	p.L585M	ENST00000273854	NM_004439.5	585	Ttg/Atg																																																																														
ATRX	0	MSKCC	GRCh37	X	76813047	76813047	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	95	287	0	ENST00000373344.5:c.6574C>T	p.Gln2192Ter	p.Q2192*	ENST00000373344	NM_000489.3	2192	Cag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108206594	108206594	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022582-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			16	58	428	0	ENST00000278616.4:c.8174A>T	p.Asp2725Val	p.D2725V	ENST00000278616	NM_000051.3	2725	gAt/gTt																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20159754	20159754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022582-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			43	82	450	1	ENST00000379607.5:c.5C>T	p.Pro2Leu	p.P2L	ENST00000379607	NM_001412.3	2	cCc/cTc																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5535014	5535014	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200938803		P-0022582-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			119	73	375	1	ENST00000397747.3:c.325G>A	p.Ala109Thr	p.A109T	ENST00000397747	NM_025239.3	109	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0022892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	104	1058	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	107	1171	0	ENST00000269305.4:c.472C>A	p.Arg158Ser	p.R158S	ENST00000269305	NM_001126112.2	158	Cgc/Agc																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23538909	23538909	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	98	734	0	ENST00000380871.4:c.530A>G	p.Tyr177Cys	p.Y177C	ENST00000380871	NM_006167.3	177	tAt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	146	979	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
PAX5	0	MSKCC	GRCh37	9	37015054	37015054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	174	898	1	ENST00000358127.4:c.350G>A	p.Arg117Gln	p.R117Q	ENST00000358127	NM_001280556.1	117	cGg/cAg																																																																														
FLT4	0	MSKCC	GRCh37	5	180039570	180039570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	221	1437	4	ENST00000261937.6:c.3473C>T	p.Ala1158Val	p.A1158V	ENST00000261937	NM_182925.4	1158	gCg/gTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11301667	11301667	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	55	985	0	ENST00000361445.4:c.1484C>G	p.Pro495Arg	p.P495R	ENST00000361445	NM_004958.3	495	cCa/cGa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101146	27101200	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACCACAAATGATGGGCGGCCCCATACAGGCATCAGCTGAGGTTGCTCAGCAA	GCCACCACAAATGATGGGCGGCCCCATACAGGCATCAGCTGAGGTTGCTCAGCAA	-			P-0022896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	173	1068	0	ENST00000324856.7:c.4429_4483del	p.Pro1477AlafsTer10	p.P1477Afs*10	ENST00000324856	NM_006015.4	1476	atGCCACCACAAATGATGGGCGGCCCCATACAGGCATCAGCTGAGGTTGCTCAGCAA/at																																																																														
CIC	0	MSKCC	GRCh37	19	42795483	42795483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	164	1102	0	ENST00000575354.2:c.2563G>A	p.Gly855Ser	p.G855S	ENST00000575354	NM_015125.3	855	Ggc/Agc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916824	178916824	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	260	1027	0	ENST00000263967.3:c.211G>C	p.Val71Leu	p.V71L	ENST00000263967	NM_006218.2	71	Gta/Cta																																																																														
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	37	775	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0022654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	42	706	1	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																																																														
ERCC5	0	MSKCC	GRCh37	13	103515248	103515248	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	25	470	0	ENST00000355739.4:c.1749G>T	p.Leu583Phe	p.L583F	ENST00000355739	NM_000123.3	583	ttG/ttT																																																																														
IRS1	0	MSKCC	GRCh37	2	227660731	227660731	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	45	791	0	ENST00000305123.5:c.2724C>G	p.Tyr908Ter	p.Y908*	ENST00000305123	NM_005544.2	908	taC/taG																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0022653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	144	517	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
NTHL1	0	MSKCC	GRCh37	16	2096313	2096313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	203	872	0	ENST00000219066.1:c.194G>A	p.Arg65His	p.R65H	ENST00000219066	NM_002528.5	65	cGt/cAt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71037210	71037210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	97	463	0	ENST00000318789.4:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000318789	NM_032682.5	361	Cgc/Tgc																																																																														
FAT1	0	MSKCC	GRCh37	4	187527273	187527273	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	153	626	0	ENST00000441802.2:c.10301A>G	p.Asn3434Ser	p.N3434S	ENST00000441802	NM_005245.3	3434	aAt/aGt																																																																														
IRF4	0	MSKCC	GRCh37	6	393283	393283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022653-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	356	804	0	ENST00000380956.4:c.131A>G	p.Asn44Ser	p.N44S	ENST00000380956	NM_001195286.1	44	aAc/aGc																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	312	648	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
BRCA2	675	MSKCC	GRCh37	13	32913836	32913837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	191	592	0	ENST00000380152.3:c.5351dup	p.Asn1784LysfsTer3	p.N1784Kfs*3	ENST00000380152		1782	caa/cAaa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858549	9858549	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs139795367		P-0022707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	267	581	0	ENST00000330684.3:c.2852G>T	p.Gly951Val	p.G951V	ENST00000330684	NM_001134407.1	951	gGg/gTg																																																																														
PPARG	0	MSKCC	GRCh37	3	12421277	12421277	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	318	762	0	ENST00000287820.6:c.157A>G	p.Met53Val	p.M53V	ENST00000287820	NM_015869.4	53	Atg/Gtg																																																																														
PPARG	0	MSKCC	GRCh37	3	12421286	12421286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022707-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	333	782	1	ENST00000287820.6:c.166C>T	p.His56Tyr	p.H56Y	ENST00000287820	NM_015869.4	56	Cac/Tac																																																																														
MGA	0	MSKCC	GRCh37	15	41961970	41961970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	125	513	0	ENST00000219905.7:c.878G>A	p.Arg293His	p.R293H	ENST00000219905	NM_001164273.1	293	cGt/cAt																																																																														
SOX9	0	MSKCC	GRCh37	17	70117835	70117836	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	75	628	1	ENST00000245479.2:c.305dup	p.Pro103AlafsTer149	p.P103Afs*149	ENST00000245479	NM_000346.3	101	-/A																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966792	25966792	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	98	785	0	ENST00000435504.4:c.2414A>G	p.Lys805Arg	p.K805R	ENST00000435504		805	aAa/aGa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500900	8500900	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	38	725	0	ENST00000356435.5:c.1982A>C	p.Glu661Ala	p.E661A	ENST00000356435		661	gAg/gCg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	224	525	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			335	148	555	0				ENST00000310581	NM_198253.2																																																																																
MEN1	0	MSKCC	GRCh37	11	64577362	64577371	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCAGGCGG	CGCCAGGCGG	-			P-0021317-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			209	283	521	0	ENST00000337652.1:c.211_220del	p.Pro71AlafsTer45	p.P71Afs*45	ENST00000337652	NM_130803.2	71	CCGCCTGGCGgc/gc																																																																														
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0022651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	373	740	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32166763	32166763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	284	775	0	ENST00000375023.3:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000375023	NM_004557.3	1492	cGg/cAg																																																																														
AR	0	MSKCC	GRCh37	X	66765533	66765533	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	101	794	0	ENST00000374690.3:c.545A>G	p.Lys182Arg	p.K182R	ENST00000374690	NM_000044.3	182	aAa/aGa																																																																														
MEN1	0	MSKCC	GRCh37	11	64575035	64575035	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	206	582	0	ENST00000337652.1:c.787C>T	p.Gln263Ter	p.Q263*	ENST00000337652	NM_130803.2	263	Cag/Tag																																																																														
ATRX	0	MSKCC	GRCh37	X	76939291	76939291	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	150	979	0	ENST00000373344.5:c.1457del	p.Asn486IlefsTer28	p.N486Ifs*28	ENST00000373344	NM_000489.3	486	aAt/at																																																																														
RB1	0	MSKCC	GRCh37	13	48919252	48919253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	109	341	0	ENST00000267163.4:c.418dup	p.Thr140AsnfsTer6	p.T140Nfs*6	ENST00000267163	NM_000321.2	139	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	716	937	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																														
IL10	0	MSKCC	GRCh37	1	206944310	206944310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	476	789	0	ENST00000423557.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000423557	NM_000572.2	107	gCg/gTg																																																																														
FLT1	0	MSKCC	GRCh37	13	28891647	28891647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	569	876	1	ENST00000282397.4:c.3374C>A	p.Ser1125Tyr	p.S1125Y	ENST00000282397	NM_002019.4	1125	tCt/tAt																																																																														
CDH1	0	MSKCC	GRCh37	16	68863630	68863630	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	689	1000	0	ENST00000261769.5:c.2369C>A	p.Thr790Asn	p.T790N	ENST00000261769	NM_004360.3	790	aCc/aAc																																																																														
APC	0	MSKCC	GRCh37	5	112176227	112176227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	286	580	0	ENST00000257430.4:c.4936G>T	p.Gly1646Trp	p.G1646W	ENST00000257430	NM_000038.5	1646	Ggg/Tgg																																																																														
RAD50	0	MSKCC	GRCh37	5	131924564	131924564	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	204	533	0	ENST00000265335.6:c.1237C>G	p.Gln413Glu	p.Q413E	ENST00000265335		413	Caa/Gaa																																																																														
INHBA	0	MSKCC	GRCh37	7	41729695	41729696	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0022913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	434	726	3	ENST00000242208.4:c.833_834delinsTT	p.Gly278Val	p.G278V	ENST00000242208	NM_002192.2	278	gGG/gTT																																																																														
IKZF1	0	MSKCC	GRCh37	7	50455127	50455127	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	232	402	0	ENST00000331340.3:c.674A>T	p.Asn225Ile	p.N225I	ENST00000331340	NM_006060.4	225	aAc/aTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521291	8521291	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	207	320	0	ENST00000356435.5:c.947A>C	p.Gln316Pro	p.Q316P	ENST00000356435		316	cAg/cCg																																																																														
RXRA	0	MSKCC	GRCh37	9	137320967	137320968	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0022913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	824	1379	1	ENST00000481739.1:c.924_925delinsTT	p.Leu309Phe	p.L309F	ENST00000481739	NM_002957.4	308	ctGCtc/ctTTtc																																																																														
BCOR	0	MSKCC	GRCh37	X	39933445	39933445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	571	834	1	ENST00000378444.4:c.1154C>T	p.Ala385Val	p.A385V	ENST00000378444	NM_001123385.1	385	gCg/gTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	228	767	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
MRE11A	0	MSKCC	GRCh37	11	94209542	94209542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	112	607	1	ENST00000323929.3:c.572G>A	p.Arg191Gln	p.R191Q	ENST00000323929	NM_005591.3	191	cGa/cAa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30102148	30102148	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	90	652	0	ENST00000331968.5:c.1319A>C	p.Lys440Thr	p.K440T	ENST00000331968	NM_002742.2	440	aAa/aCa																																																																														
SETD2	0	MSKCC	GRCh37	3	47165700	47166476	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATTTTGCCCAATTCCACCCTTGACTTTGGTGGGGAAGATTCTTCTGCAGTAGATAAGGTATCACCAATTTCCATTTTCATTTTAGGAGTCGAGTCTACCTGAAGAGGTACAGCTGGAGGGTTTGGAGTATCACTTTGCTTTTCATTGCCAAGTGCAGTGAGAAACCTATTCTGCAAAGTTTTCTTTGTAAGGCTGAAGCTGAATGACACCTTCTGTCGTCCCTGTTCTTCCAAATTAACTTTTGTTTTGGTGCCTTTGGGCAAAAATCGACTAGAAGCAACACCTTTGAACATTGGTCCTTTGATGAAACCTGTTTTCTGCACATTTTCAATCTTTGCCTACAAATGAACAAAATAAGCAATTACTACTACAATAAATAGTTACTTTCAAATGGACTGCACAGTTTAAAATGTTTACTGGAGAAATGAAAAGCCCTTTTTAATAACAAATAGTATGAATTTCACTAAGCTATATATATCTTTATTATGAAAATTTTCAAACACAGTCAAAAGTATAGAAAATGGTATAATAAATCCCTAAGTATCCACTCCAAGCTTCAACAATTACCTATTTTCCCCATTCTTACTTTCTCGTACATAAATAACTTTTTTCAGTTTTATAACTATTTTCCAGGTAGCATTTTTTAAAAAGAATTTTTTAAAAACCTGACATATGTTTGAAAGACATTTGTATAAAGGGCAATATCTAACATCTCAGTACTCAATATGGTTTGTTCTTGTGTTCTATCAGAGATGAAAAATCAGAGGTCATCAAGA	AATTTTGCCCAATTCCACCCTTGACTTTGGTGGGGAAGATTCTTCTGCAGTAGATAAGGTATCACCAATTTCCATTTTCATTTTAGGAGTCGAGTCTACCTGAAGAGGTACAGCTGGAGGGTTTGGAGTATCACTTTGCTTTTCATTGCCAAGTGCAGTGAGAAACCTATTCTGCAAAGTTTTCTTTGTAAGGCTGAAGCTGAATGACACCTTCTGTCGTCCCTGTTCTTCCAAATTAACTTTTGTTTTGGTGCCTTTGGGCAAAAATCGACTAGAAGCAACACCTTTGAACATTGGTCCTTTGATGAAACCTGTTTTCTGCACATTTTCAATCTTTGCCTACAAATGAACAAAATAAGCAATTACTACTACAATAAATAGTTACTTTCAAATGGACTGCACAGTTTAAAATGTTTACTGGAGAAATGAAAAGCCCTTTTTAATAACAAATAGTATGAATTTCACTAAGCTATATATATCTTTATTATGAAAATTTTCAAACACAGTCAAAAGTATAGAAAATGGTATAATAAATCCCTAAGTATCCACTCCAAGCTTCAACAATTACCTATTTTCCCCATTCTTACTTTCTCGTACATAAATAACTTTTTTCAGTTTTATAACTATTTTCCAGGTAGCATTTTTTAAAAAGAATTTTTTAAAAACCTGACATATGTTTGAAAGACATTTGTATAAAGGGCAATATCTAACATCTCAGTACTCAATATGGTTTGTTCTTGTGTTCTATCAGAGATGAAAAATCAGAGGTCATCAAGA	-			P-0022822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	43	585	0	ENST00000409792.3:c.88-438_426del		p.X30_splice	ENST00000409792	NM_014159.6	30																																																																															
IFNGR1	0	MSKCC	GRCh37	6	137540464	137540464	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0022822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	67	448	0	ENST00000367739.4:c.1A>G	p.Met1?	p.M1?	ENST00000367739	NM_000416.2	1	Atg/Gtg																																																																														
AR	0	MSKCC	GRCh37	X	66931282	66931282	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111468555		P-0022822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	41	293	0	ENST00000374690.3:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000374690	NM_000044.3	642	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	137	847	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	170	755	2	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
RB1	0	MSKCC	GRCh37	13	48941694	48941694	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	205	588	0	ENST00000267163.4:c.1004T>A	p.Leu335Ter	p.L335*	ENST00000267163	NM_000321.2	335	tTa/tAa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2211811	2211817	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCTG	CAGCCTG	-			P-0022820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	169	923	0	ENST00000398665.3:c.1530_1536del	p.Ser510ArgfsTer45	p.S510Rfs*45	ENST00000398665	NM_032482.2	509	gcCAGCCTG/gc																																																																														
BCOR	0	MSKCC	GRCh37	X	39921510	39921510	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	184	439	0	ENST00000378444.4:c.4310C>G	p.Ser1437Ter	p.S1437*	ENST00000378444	NM_001123385.1	1437	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7578241	7578241	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	349	930	0	ENST00000269305.4:c.608T>A	p.Val203Glu	p.V203E	ENST00000269305	NM_001126112.2	203	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	22	812	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	68	697	0				ENST00000310581	NM_198253.2																																																																																
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	252	862	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32168916	32168916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	255	984	0	ENST00000375023.3:c.4117G>A	p.Glu1373Lys	p.E1373K	ENST00000375023	NM_004557.3	1373	Gag/Aag																																																																														
IKZF1	10320	MSKCC	GRCh37	7	50467675	50467675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759124417		P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	136	677	0	ENST00000331340.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000331340	NM_006060.4	304	Gaa/Aaa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18699323	18699323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199904184		P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	156	559	0	ENST00000266497.5:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000266497		1142	Cgt/Tgt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212488718	212488718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	175	698	0	ENST00000342788.4:c.2131C>T	p.Arg711Cys	p.R711C	ENST00000342788	NM_005235.2	711	Cgt/Tgt																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925412	114925412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	226	819	1	ENST00000543371.1:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000543371	NM_001198531.1	497	cCg/cTg																																																																														
TSC2	0	MSKCC	GRCh37	16	2122880	2122880	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	186	826	4	ENST00000219476.3:c.2251C>T	p.Arg751Ter	p.R751*	ENST00000219476	NM_000548.3	751	Cga/Tga																																																																														
BRAF	0	MSKCC	GRCh37	7	140481408	140481408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	148	575	1	ENST00000288602.6:c.1400C>T	p.Ser467Leu	p.S467L	ENST00000288602	NM_004333.4	467	tCa/tTa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518175	8518175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	53	479	1	ENST00000356435.5:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000356435		406	Gaa/Aaa																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211154	36211154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	223	1214	0	ENST00000222270.7:c.905C>T	p.Pro302Leu	p.P302L	ENST00000222270	NM_014727.1	302	cCc/cTc																																																																														
UPF1	0	MSKCC	GRCh37	19	18965985	18965985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	177	748	0	ENST00000262803.5:c.1478C>T	p.Pro493Leu	p.P493L	ENST00000262803	NM_002911.3	493	cCg/cTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16254692	16254692	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	191	704	0	ENST00000375759.3:c.1957C>T	p.Arg653Ter	p.R653*	ENST00000375759	NM_015001.2	653	Cga/Tga																																																																														
JAK1	0	MSKCC	GRCh37	1	65307265	65307265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	158	537	0	ENST00000342505.4:c.2423G>A	p.Ser808Asn	p.S808N	ENST00000342505	NM_002227.2	808	aGc/aAc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18762554	18762554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	113	475	0	ENST00000266497.5:c.4050G>A	p.Met1350Ile	p.M1350I	ENST00000266497		1350	atG/atA																																																																														
GLI1	0	MSKCC	GRCh37	12	57861263	57861263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	197	602	0	ENST00000228682.2:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000228682	NM_005269.2	354	Cgg/Tgg																																																																														
BRIP1	0	MSKCC	GRCh37	17	59926513	59926513	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	275	889	0	ENST00000259008.2:c.484C>T	p.Arg162Ter	p.R162*	ENST00000259008	NM_032043.2	162	Cga/Tga																																																																														
SMAD2	0	MSKCC	GRCh37	18	45374975	45374975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	141	744	0	ENST00000262160.6:c.868T>C	p.Phe290Leu	p.F290L	ENST00000262160	NM_005901.5	290	Ttc/Ctc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153332697	153332698	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	194	664	0	ENST00000281708.4:c.258_259delinsAA	p.Val87Ile	p.V87I	ENST00000281708	NM_033632.3	86	tcGGta/tcAAta																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120702	94120702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	174	571	0	ENST00000369303.4:c.349G>A	p.Gly117Arg	p.G117R	ENST00000369303	NM_004440.3	117	Gga/Aga																																																																														
EGFL7	0	MSKCC	GRCh37	9	139566719	139566719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	299	922	0	ENST00000308874.7:c.803C>T	p.Ser268Phe	p.S268F	ENST00000308874		268	tCc/tTc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53231079	53231079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	159	383	0	ENST00000375401.3:c.1823G>C	p.Gly608Ala	p.G608A	ENST00000375401	NM_004187.3	608	gGc/gCc																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	424	892	4	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	160	765	1	ENST00000335508.6:c.1998G>T	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaT																																																																														
WT1	0	MSKCC	GRCh37	11	32417920	32417920	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	123	705	0	ENST00000332351.3:c.1132C>G	p.Leu378Val	p.L378V	ENST00000332351	NM_024426.4	378	Ctt/Gtt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0022906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	161	1065	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0022906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	67	526	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0022906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	357	1256	0	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10244964	10244964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	88	882	1	ENST00000340748.4:c.4745C>T	p.Pro1582Leu	p.P1582L	ENST00000340748		1582	cCg/cTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70120106	70120106	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			77	30	154	0	ENST00000245479.2:c.1109del	p.Pro370ArgfsTer13	p.P370Rfs*13	ENST00000245479	NM_000346.3	370	Ccg/cg																																																																														
CARD11	0	MSKCC	GRCh37	7	2966388	2966388	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145836432		P-0022906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	171	955	0	ENST00000396946.4:c.1792G>A	p.Ala598Thr	p.A598T	ENST00000396946	NM_032415.4	598	Gcc/Acc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	74	473	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CBFB	0	MSKCC	GRCh37	16	67070567	67070567	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	70	432	0	ENST00000412916.2:c.191T>G	p.Leu64Arg	p.L64R	ENST00000412916		64	cTg/cGg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860235	151860236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	197	710	0	ENST00000262189.6:c.10426dup	p.Gln3476ProfsTer19	p.Q3476Pfs*19	ENST00000262189	NM_170606.2	3476	caa/cCaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	38	1281	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830751	72830751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	79	899	1	ENST00000268489.5:c.5830G>A	p.Ala1944Thr	p.A1944T	ENST00000268489	NM_006885.3	1944	Gcc/Acc																																																																														
KDM5A	0	MSKCC	GRCh37	12	427480	427480	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	86	999	0	ENST00000399788.2:c.2689G>C	p.Glu897Gln	p.E897Q	ENST00000399788	NM_001042603.1	897	Gag/Cag																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061131	38061202	+	inframe_deletion	In_Frame_Del	DEL	GCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	GCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTG	-			P-0022904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	115	337	0	ENST00000250448.2:c.787_858del	p.Gln263_Gly286del	p.Q263_G286del	ENST00000250448	NM_004496.3	263	CAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGC/-																																																																														
APC	0	MSKCC	GRCh37	5	112157630	112157631	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	46	905	0	ENST00000257430.4:c.1351dup	p.Cys451LeufsTer9	p.C451Lfs*9	ENST00000257430	NM_000038.5	450	-/T																																																																														
KIT	0	MSKCC	GRCh37	4	55593613	55593613	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	274	620	0	ENST00000288135.5:c.1679T>G	p.Val560Gly	p.V560G	ENST00000288135	NM_000222.2	560	gTt/gGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	83	546	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0022834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	225	980	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																																																														
KDM6A	0	MSKCC	GRCh37	X	44923060	44923060	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0022834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	745	415	0	ENST00000377967.4:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000377967	NM_021140.2	641	Cag/Tag																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732494	74732494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	41	278	0	ENST00000359995.5:c.415C>T	p.Arg139Cys	p.R139C	ENST00000359995	NM_001195427.1	139	Cgc/Tgc																																																																														
VHL	0	MSKCC	GRCh37	3	10183814	10183814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	292	873	2	ENST00000256474.2:c.283C>T	p.Pro95Ser	p.P95S	ENST00000256474	NM_000551.3	95	Ccg/Tcg																																																																														
TSC1	0	MSKCC	GRCh37	9	135797258	135797258	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	141	467	0	ENST00000298552.3:c.611del	p.Arg204LeufsTer6	p.R204Lfs*6	ENST00000298552	NM_001162426.1	204	cGt/ct																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	123	702	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
ATM	0	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	123	534	0	ENST00000278616.4:c.8631G>C	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttC																																																																														
SETD8	0	MSKCC	GRCh37	12	123874011	123874013	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs780061449		P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	13	78	1	ENST00000330479.4:c.62_64del	p.Ala21del	p.A21del	ENST00000330479	NM_020382.3	14	gaGGCg/gag																																																																														
MSH6	0	MSKCC	GRCh37	2	48027380	48027380	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	57	401	0	ENST00000234420.5:c.2258C>G	p.Ser753Cys	p.S753C	ENST00000234420	NM_000179.2	753	tCt/tGt																																																																														
CUL3	0	MSKCC	GRCh37	2	225371596	225371596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	43	599	0	ENST00000264414.4:c.1008G>C	p.Lys336Asn	p.K336N	ENST00000264414	NM_003590.4	336	aaG/aaC																																																																														
SHQ1	0	MSKCC	GRCh37	3	72799499	72799499	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	96	805	0	ENST00000325599.8:c.1670del	p.Gly557AlafsTer5	p.G557Afs*5	ENST00000325599	NM_018130.2	557	gGc/gc																																																																														
SDHA	0	MSKCC	GRCh37	5	256518	256518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	86	377	0	ENST00000264932.6:c.1978G>T	p.Ala660Ser	p.A660S	ENST00000264932	NM_004168.2	660	Gcc/Tcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0022699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	444	990	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	70	313	1	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	17	788	1	ENST00000263967.3:c.316G>T	p.Gly106Cys	p.G106C	ENST00000263967	NM_006218.2	106	Ggc/Tgc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25505312	25505312	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	318	878	0	ENST00000264709.3:c.446C>T	p.Ala149Val	p.A149V	ENST00000264709	NM_175629.2	149	gCg/gTg																																																																														
AKT1	0	MSKCC	GRCh37	14	105239859	105239859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022699-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	135	902	0	ENST00000349310.3:c.761G>A	p.Gly254Asp	p.G254D	ENST00000349310	NM_001014432.1	254	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	510	705	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779503	3779504	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0022866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	168	688	0	ENST00000262367.5:c.5544_5545del	p.His1848GlnfsTer117	p.H1848Qfs*117	ENST00000262367	NM_004380.2	1848	caCAag/caag																																																																														
SETD2	0	MSKCC	GRCh37	3	47098380	47098393	+	frameshift_variant	Frame_Shift_Del	DEL	TTGATAATATATGG	TTGATAATATATGG	-			P-0022866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	260	478	0	ENST00000409792.3:c.6881_6894del	p.Thr2294ArgfsTer70	p.T2294Rfs*70	ENST00000409792	NM_014159.6	2294	aCCATATATTATCAA/a																																																																														
KIT	0	MSKCC	GRCh37	4	55604655	55604655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	183	422	2	ENST00000288135.5:c.2863G>A	p.Val955Met	p.V955M	ENST00000288135	NM_000222.2	955	Gtg/Atg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	35	450	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0022750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	37	590	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11998971	11998972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	13	401	0	ENST00000353533.5:c.476dupC	p.Tyr160IlefsTer14	p.Y160Ifs*14	ENST00000353533	NM_003010.3	158	tgc/tgCc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922364	178922364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	31	424	1	ENST00000263967.3:c.1133G>A	p.Cys378Tyr	p.C378Y	ENST00000263967	NM_006218.2	378	tGt/tAt																																																																														
NSD1	0	MSKCC	GRCh37	5	176637813	176637813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	65	622	1	ENST00000439151.2:c.2413G>A	p.Val805Ile	p.V805I	ENST00000439151	NM_022455.4	805	Gtt/Att																																																																														
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0022693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	123	354	0	ENST00000412916.2:c.165+1G>C		p.X55_splice	ENST00000412916		55																																																																															
ANKRD11	0	MSKCC	GRCh37	16	89350973	89350974	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0022693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	269	1174	1	ENST00000301030.4:c.1976dup	p.Tyr659Ter	p.Y659*	ENST00000301030	NM_001256183.1	659	tac/taAc																																																																														
AKT2	0	MSKCC	GRCh37	19	40761127	40761128	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATGACAAAGGTGTTGGGTCGCGGCCTCTCGGTCTTC			P-0022693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	134	919	0	ENST00000392038.2:c.189_224dup	p.Met63_Val74dup	p.M63_V74dup	ENST00000392038	NM_001626.4	63	ata/atGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	28	714	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CARM1	0	MSKCC	GRCh37	19	11027430	11027430	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	153	852	0	ENST00000327064.4:c.997G>C	p.Glu333Gln	p.E333Q	ENST00000327064	NM_199141.1	333	Gag/Cag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	18	448	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CBFB	0	MSKCC	GRCh37	16	67063666	67063666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	29	623	0	ENST00000412916.2:c.115G>A	p.Glu39Lys	p.E39K	ENST00000412916		39	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	122	884	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061459	38061459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	106	751	1	ENST00000250448.2:c.530C>T	p.Ser177Leu	p.S177L	ENST00000250448	NM_004496.3	177	tCg/tTg																																																																														
DIS3	0	MSKCC	GRCh37	13	73347949	73347949	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	49	382	0	ENST00000377767.4:c.1112A>T	p.His371Leu	p.H371L	ENST00000377767	NM_014953.3	371	cAt/cTt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143181714	143181714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	30	601	0	ENST00000262992.4:c.619G>A	p.Ala207Thr	p.A207T	ENST00000262992	NM_001101669.1	207	Gcc/Acc																																																																														
MSH3	0	MSKCC	GRCh37	5	79950593	79950593	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022865-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	96	751	0	ENST00000265081.6:c.47C>G	p.Ser16Ter	p.S16*	ENST00000265081	NM_002439.4	16	tCa/tGa																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0022685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	144	811	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0022685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	144	811	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0022685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	144	811	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139402690	139402690	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	196	1013	0	ENST00000277541.6:c.3319C>T	p.Arg1107Ter	p.R1107*	ENST00000277541	NM_017617.3	1107	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	333	962	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107180	27107180	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	225	798	0	ENST00000324856.7:c.6791C>G	p.Ser2264Ter	p.S2264*	ENST00000324856	NM_006015.4	2264	tCa/tGa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198299701	198299701	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	68	579	0	ENST00000335508.6:c.23A>G	p.His8Arg	p.H8R	ENST00000335508	NM_012433.2	8	cAc/cGc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711931	89711931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	82	757	0	ENST00000371953.3:c.549G>T	p.Lys183Asn	p.K183N	ENST00000371953	NM_000314.4	183	aaG/aaT																																																																														
FLT3	0	MSKCC	GRCh37	13	28608284	28608284	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	84	934	0	ENST00000241453.7:c.1772A>G	p.Tyr591Cys	p.Y591C	ENST00000241453	NM_004119.2	591	tAc/tGc																																																																														
ARID2	0	MSKCC	GRCh37	12	46244548	46244548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	115	754	0	ENST00000334344.6:c.2642C>G	p.Ala881Gly	p.A881G	ENST00000334344	NM_152641.2	881	gCt/gGt																																																																														
B2M	0	MSKCC	GRCh37	15	45007842	45007842	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	74	677	0	ENST00000558401.1:c.289G>T	p.Glu97Ter	p.E97*	ENST00000558401	NM_004048.2	97	Gag/Tag																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41750470	41750470	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	116	689	1	ENST00000226382.2:c.158C>A	p.Ala53Asp	p.A53D	ENST00000226382	NM_003924.3	53	gCc/gAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0022747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	173	342	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
TBX3	0	MSKCC	GRCh37	12	115118704	115118706	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0022747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	138	610	0	ENST00000257566.3:c.635_637del	p.Asn212del	p.N212del	ENST00000257566	NM_016569.3	212	aACAtt/att																																																																														
ATM	0	MSKCC	GRCh37	11	108198382	108198382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	78	504	0	ENST00000278616.4:c.6986G>T	p.Ser2329Ile	p.S2329I	ENST00000278616	NM_000051.3	2329	aGc/aTc																																																																														
CDH1	0	MSKCC	GRCh37	16	68771355	68771381	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCTGCTGCAGGTACCCCGGATCCCC	CTGCTGCTGCAGGTACCCCGGATCCCC	-			P-0022747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	93	505	0	ENST00000261769.5:c.37_48+15del		p.X13_splice	ENST00000261769	NM_004360.3	13																																																																															
RAD50	0	MSKCC	GRCh37	5	131923368	131923368	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	50	226	0	ENST00000265335.6:c.871G>C	p.Glu291Gln	p.E291Q	ENST00000265335		291	Gag/Cag																																																																														
PMS2	0	MSKCC	GRCh37	7	6038756	6038756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022747-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	185	709	1	ENST00000265849.7:c.688G>A	p.Val230Met	p.V230M	ENST00000265849	NM_000535.5	230	Gtg/Atg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	23	912	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	35	912	3	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
BIRC3	0	MSKCC	GRCh37	11	102201930	102201931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGAGAG			P-0022687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	33	423	0	ENST00000263464.3:c.1286_1287insGAGGGGA	p.Glu430ArgfsTer10	p.E430Rfs*10	ENST00000263464	NM_001165.4	428	agg/aGGGAGAGgg																																																																														
CCND3	0	MSKCC	GRCh37	6	41903707	41903707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1041	155	958	5	ENST00000372991.4:c.850C>T	p.Pro284Ser	p.P284S	ENST00000372991	NM_001760.3	284	Cct/Tct																																																																														
ROS1	0	MSKCC	GRCh37	6	117677896	117677896	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022687-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	178	697	27	ENST00000368508.3:c.4037A>T	p.Asn1346Ile	p.N1346I	ENST00000368508	NM_002944.2	1346	aAc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022835-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	123	630	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	214	653	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20156729	20156729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	283	226	0	ENST00000379607.5:c.28A>G	p.Lys10Glu	p.K10E	ENST00000379607	NM_001412.3	10	Aaa/Gaa																																																																														
SETD2	0	MSKCC	GRCh37	3	47098779	47098779	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	624	833	0	ENST00000409792.3:c.6495del	p.Gly2166ValfsTer82	p.G2166Vfs*82	ENST00000409792	NM_014159.6	2165	gcT/gc																																																																														
BAP1	0	MSKCC	GRCh37	3	52442555	52442556	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0022745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	563	775	0	ENST00000460680.1:c.188_189dup	p.Thr64LeufsTer9	p.T64Lfs*9	ENST00000460680	NM_004656.3	63	-/CT																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	201	566	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153249503	153249503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	122	534	0	ENST00000281708.4:c.1275G>C	p.Trp425Cys	p.W425C	ENST00000281708	NM_033632.3	425	tgG/tgC																																																																														
SOX9	0	MSKCC	GRCh37	17	70119966	70120018	+	frameshift_variant	Frame_Shift_Del	DEL	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	GCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG	-			P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	57	301	0	ENST00000245479.2:c.970_1022del	p.Thr324AlafsTer236	p.T324Afs*236	ENST00000245479	NM_000346.3	323	aGCACCGCGGCCACCCCGGCGAGCGCGGGCCACGTGTGGATGTCCAAGCAGCAG/a																																																																														
ASXL2	55252	MSKCC	GRCh37	2	25965809	25965809	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1285225904		P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	212	601	0	ENST00000435504.4:c.3397C>T	p.Arg1133Trp	p.R1133W	ENST00000435504		1133	Cgg/Tgg																																																																														
KIT	0	MSKCC	GRCh37	4	55603417	55603417	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	42	337	0	ENST00000288135.5:c.2773G>T	p.Glu925Ter	p.E925*	ENST00000288135	NM_000222.2	925	Gag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112175394	112175395	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	65	242	0	ENST00000257430.4:c.4103_4104insT	p.Pro1369ThrfsTer6	p.P1369Tfs*6	ENST00000257430	NM_000038.5	1368	aca/acTa																																																																														
FLT4	0	MSKCC	GRCh37	5	180048896	180048896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	242	635	0	ENST00000261937.6:c.1666G>A	p.Asp556Asn	p.D556N	ENST00000261937	NM_182925.4	556	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	109	825	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	63	778	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0022839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	169	440	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
RAD51C	0	MSKCC	GRCh37	17	56780684	56780684	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	196	513	0	ENST00000337432.4:c.699C>G	p.His233Gln	p.H233Q	ENST00000337432	NM_058216.2	233	caC/caG																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	65	1047	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0022691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	60	461	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	137	829	0	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920435	114920435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	59	666	2	ENST00000543371.1:c.1376G>T	p.Trp459Leu	p.W459L	ENST00000543371	NM_001198531.1	459	tGg/tTg																																																																														
ATR	0	MSKCC	GRCh37	3	142285059	142285059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	51	600	0	ENST00000350721.4:c.196G>C	p.Val66Leu	p.V66L	ENST00000350721	NM_001184.3	66	Gtg/Ctg																																																																														
APC	0	MSKCC	GRCh37	5	112177149	112177149	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	91	525	1	ENST00000257430.4:c.5858A>G	p.Asn1953Ser	p.N1953S	ENST00000257430	NM_000038.5	1953	aAt/aGt																																																																														
PARK2	0	MSKCC	GRCh37	6	162394436	162394436	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	50	541	0	ENST00000366898.1:c.632A>C	p.Lys211Thr	p.K211T	ENST00000366898	NM_004562.2	211	aAa/aCa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0022843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	205	512	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
MSH2	0	MSKCC	GRCh37	2	47707894	47707894	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	47	478	0	ENST00000233146.2:c.2518G>C	p.Val840Leu	p.V840L	ENST00000233146	NM_000251.2	840	Gta/Cta																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858119	152858119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022843-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	130	727	3	ENST00000406277.2:c.496G>A	p.Val166Ile	p.V166I	ENST00000406277	NM_152274.4	166	Gtc/Atc																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0022874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	119	601	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0022874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	36	433	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	100	686	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0022874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	82	706	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
APC	0	MSKCC	GRCh37	5	112175630	112175630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	29	382	1	ENST00000257430.4:c.4339C>T	p.Gln1447Ter	p.Q1447*	ENST00000257430	NM_000038.5	1447	Caa/Taa																																																																														
NTRK2	0	MSKCC	GRCh37	9	87636204	87636204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	56	547	0	ENST00000277120.3:c.2369G>A	p.Arg790Gln	p.R790Q	ENST00000277120		790	cGa/cAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	82	443	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031883	26031884	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0022874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	55	251	0	ENST00000244661.2:c.405_406delAG	p.Arg135SerfsTer12	p.R135Sfs*12	ENST00000244661	NM_003537.3	135	agAGcg/agcg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72984743	72984743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	146	801	0	ENST00000268489.5:c.2841C>G	p.Cys947Trp	p.C947W	ENST00000268489	NM_006885.3	947	tgC/tgG																																																																														
BRD4	0	MSKCC	GRCh37	19	15375332	15375332	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	104	753	0	ENST00000263377.2:c.1095T>G	p.Phe365Leu	p.F365L	ENST00000263377	NM_058243.2	365	ttT/ttG																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67592075	67592075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	63	328	0	ENST00000274335.5:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000274335		631	Cga/Tga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67592139	67592140	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	61	298	0	ENST00000274335.5:c.1956dup	p.Lys653Ter	p.K653*	ENST00000274335		652	agt/agTt																																																																														
ATM	0	MSKCC	GRCh37	11	108168020	108168020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	22	364	0	ENST00000278616.4:c.4916C>T	p.Pro1639Leu	p.P1639L	ENST00000278616	NM_000051.3	1639	cCg/cTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0022754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	72	801	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120508112	120508112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	26	484	0	ENST00000256646.2:c.1645G>C	p.Asp549His	p.D549H	ENST00000256646	NM_024408.3	549	Gat/Cat																																																																														
JAK3	0	MSKCC	GRCh37	19	17941001	17941001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	32	953	2	ENST00000458235.1:c.3123G>T	p.Glu1041Asp	p.E1041D	ENST00000458235	NM_000215.3	1041	gaG/gaT																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	99	507	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164709	36164709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	140	772	0	ENST00000300305.3:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000300305		389	tCg/tTg																																																																														
RHOA	0	MSKCC	GRCh37	3	49405927	49405927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	93	771	0	ENST00000418115.1:c.211C>A	p.Pro71Thr	p.P71T	ENST00000418115	NM_001664.2	71	Ccc/Acc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52713591	52713591	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0022864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	53	561	0	ENST00000394830.3:c.137del	p.Pro46LeufsTer49	p.P46Lfs*49	ENST00000394830	NM_018313.4	46	cCt/ct																																																																														
PARK2	0	MSKCC	GRCh37	6	161781129	161781129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022864-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	75	689	1	ENST00000366898.1:c.1276G>A	p.Glu426Lys	p.E426K	ENST00000366898	NM_004562.2	426	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	734	758	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0022761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	414	899	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52702657	52702657	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	225	469	1	ENST00000394830.3:c.241C>T	p.Gln81Ter	p.Q81*	ENST00000394830	NM_018313.4	81	Caa/Taa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123256138	123256138	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	230	884	0	ENST00000358487.5:c.1771A>C	p.Asn591His	p.N591H	ENST00000358487	NM_000141.4	591	Aac/Cac																																																																														
NCOR1	0	MSKCC	GRCh37	17	15960892	15960892	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	141	469	0	ENST00000268712.3:c.6328G>C	p.Val2110Leu	p.V2110L	ENST00000268712	NM_006311.3	2110	Gtc/Ctc																																																																														
LYN	0	MSKCC	GRCh37	8	56922658	56922658	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	311	818	0	ENST00000519728.1:c.1528C>G	p.Gln510Glu	p.Q510E	ENST00000519728	NM_002350.3	510	Cag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	186	629	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0022763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	356	658	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9782369	9782369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	129	890	1	ENST00000377346.4:c.2302G>A	p.Ala768Thr	p.A768T	ENST00000377346	NM_005026.3	768	Gca/Aca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992043	72992043	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	53	842	0	ENST00000268489.5:c.2002T>C	p.Cys668Arg	p.C668R	ENST00000268489	NM_006885.3	668	Tgt/Cgt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348743	89348743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1238	194	1131	0	ENST00000301030.4:c.4207G>A	p.Gly1403Arg	p.G1403R	ENST00000301030	NM_001256183.1	1403	Gga/Aga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	122	614	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	183	521	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	216	815	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																																																														
MED12	0	MSKCC	GRCh37	X	70339981	70339981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	120	530	1	ENST00000374080.3:c.514G>A	p.Glu172Lys	p.E172K	ENST00000374080		172	Gag/Aag																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32165273	32165273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	123	843	0	ENST00000375023.3:c.4855C>G	p.Leu1619Val	p.L1619V	ENST00000375023	NM_004557.3	1619	Ctg/Gtg																																																																														
PGR	0	MSKCC	GRCh37	11	100922271	100922271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	88	482	0	ENST00000325455.5:c.2241G>C	p.Gln747His	p.Q747H	ENST00000325455	NM_001202474.3	747	caG/caC																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66518924	66518924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	163	369	1	ENST00000358598.2:c.205C>A	p.Gln69Lys	p.Q69K	ENST00000358598	NM_212471.2	69	Cag/Aag																																																																														
SOX9	0	MSKCC	GRCh37	17	70117614	70117614	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	154	715	0	ENST00000245479.2:c.82G>C	p.Glu28Gln	p.E28Q	ENST00000245479	NM_000346.3	28	Gag/Cag																																																																														
SOS1	0	MSKCC	GRCh37	2	39278351	39278352	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	75	823	2	ENST00000402219.2:c.797_798delinsAG	p.Thr266Lys	p.T266K	ENST00000402219	NM_005633.3	266	aCA/aAG																																																																														
MSH2	0	MSKCC	GRCh37	2	47698199	47698199	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	78	322	0	ENST00000233146.2:c.1757C>T	p.Ser586Leu	p.S586L	ENST00000233146	NM_000251.2	586	tCa/tTa																																																																														
MST1R	0	MSKCC	GRCh37	3	49932800	49932800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	154	852	1	ENST00000296474.3:c.3071C>T	p.Pro1024Leu	p.P1024L	ENST00000296474	NM_002447.2	1024	cCt/cTt																																																																														
FAT1	0	MSKCC	GRCh37	4	187538966	187538966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	130	529	0	ENST00000441802.2:c.8774G>A	p.Gly2925Glu	p.G2925E	ENST00000441802	NM_005245.3	2925	gGg/gAg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591128	67591128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	54	332	0	ENST00000274335.5:c.1721G>C	p.Arg574Thr	p.R574T	ENST00000274335		574	aGa/aCa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151843753	151843754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	124	543	0	ENST00000262189.6:c.13960_13961dup	p.Pro4655SerfsTer5	p.P4655Sfs*5	ENST00000262189	NM_170606.2	4654	ttc/ttTTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518403	8518403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	22	233	0	ENST00000356435.5:c.988G>A	p.Val330Ile	p.V330I	ENST00000356435		330	Gta/Ata																																																																														
RBM10	0	MSKCC	GRCh37	X	47032526	47032526	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	209	649	0	ENST00000329236.7:c.202-1G>A		p.X68_splice	ENST00000329236	NM_001204466.1	68																																																																															
KDM5C	0	MSKCC	GRCh37	X	53245159	53245159	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0022735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	170	575	0	ENST00000375401.3:c.782-1G>C		p.X261_splice	ENST00000375401	NM_004187.3	261																																																																															
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	469	899	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																																																														
RET	0	MSKCC	GRCh37	10	43600475	43600475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1462	84	789	0	ENST00000355710.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000355710	NM_020975.4	234	cGg/cAg																																																																														
DIS3	0	MSKCC	GRCh37	13	73336073	73336073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	11	317	0	ENST00000377767.4:c.2330C>T	p.Ser777Leu	p.S777L	ENST00000377767	NM_014953.3	777	tCa/tTa																																																																														
TBX3	0	MSKCC	GRCh37	12	115114102	115114156	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGACATGGTTTACCTTTGAGGTTCGATGTCCCTACAGTGGAGGCGGCTGGAG	AGGTGACATGGTTTACCTTTGAGGTTCGATGTCCCTACAGTGGAGGCGGCTGGAG	-			P-0022718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	323	458	0	ENST00000257566.3:c.1061_1099+16del		p.X354_splice	ENST00000257566	NM_016569.3	354																																																																															
HIST1H3I	0	MSKCC	GRCh37	6	27839759	27839759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	510	684	0	ENST00000328488.2:c.335C>T	p.Ala112Val	p.A112V	ENST00000328488	NM_003533.2	112	gCc/gTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873843	151873843	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	330	603	0	ENST00000262189.6:c.8695C>T	p.Gln2899Ter	p.Q2899*	ENST00000262189	NM_170606.2	2899	Caa/Taa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	487	786	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	117	444	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
SMAD2	0	MSKCC	GRCh37	18	45423058	45423058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	118	448	0	ENST00000262160.6:c.70G>T	p.Gly24Trp	p.G24W	ENST00000262160	NM_005901.5	24	Ggg/Tgg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40730801	40730801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	291	791	0	ENST00000373198.4:c.3734G>T	p.Gly1245Val	p.G1245V	ENST00000373198	NM_133170.3	1245	gGa/gTa																																																																														
U2AF1	0	MSKCC	GRCh37	21	44527604	44527604	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	118	724	0	ENST00000291552.4:c.1A>G	p.Met1?	p.M1?	ENST00000291552	NM_006758.2	1	Atg/Gtg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143159022	143159022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	137	430	0	ENST00000262992.4:c.831G>T	p.Leu277Phe	p.L277F	ENST00000262992	NM_001101669.1	277	ttG/ttT																																																																														
MYC	0	MSKCC	GRCh37	8	128751131	128751131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	151	847	0	ENST00000377970.2:c.668G>T	p.Cys223Phe	p.C223F	ENST00000377970	NM_002467.4	223	tGc/tTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427086	49427133	+	inframe_deletion	In_Frame_Del	DEL	ATGCCCTGGGGCCCCTGGGGTGGTTGAGGGGACAGCTGCTGGACCAGG	ATGCCCTGGGGCCCCTGGGGTGGTTGAGGGGACAGCTGCTGGACCAGG	-			P-0022765-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	26	663	0	ENST00000301067.7:c.11355_11402del	p.Val3787_Leu3802del	p.V3787_L3802del	ENST00000301067	NM_003482.3	3785	ctCCTGGTCCAGCAGCTGTCCCCTCAACCACCCCAGGGGCCCCAGGGCATg/ctg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	67	432	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	101	771	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																																																														
FOXP1	0	MSKCC	GRCh37	3	71008398	71008398	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0022739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	73	424	0	ENST00000318789.4:c.2034A>G	p.Ter678TrpextTer51	p.*678Wext*51	ENST00000318789	NM_032682.5	678	tgA/tgG																																																																														
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	143	759	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																																																														
HIST2H3D	0	MSKCC	GRCh37	1	149784833	149784833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	33	270	0	ENST00000331491.1:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000331491	NM_001123375.2	135	cGg/cAg																																																																														
TBX3	0	MSKCC	GRCh37	12	115114116	115114117	+	splice_donor_variant	Splice_Site	INS	-	-	C			P-0022767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	97	544	0	ENST00000257566.3:c.1099+1dup		p.X367_splice	ENST00000257566	NM_016569.3	367																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022292-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	17	728	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27102196	27102196	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0022757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	105	491	0	ENST00000324856.7:c.5122C>T	p.Gln1708Ter	p.Q1708*	ENST00000324856	NM_006015.4	1708	Cag/Tag																																																																														
ARID5B	0	MSKCC	GRCh37	10	63851661	63851662	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	190	609	0	ENST00000279873.7:c.2441dup	p.Leu814PhefsTer13	p.L814Ffs*13	ENST00000279873	NM_032199.2	813	-/T																																																																														
VHL	0	MSKCC	GRCh37	3	10183769	10183771	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0022757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	172	537	0	ENST00000256474.2:c.238_240del	p.Ser80del	p.S80del	ENST00000256474	NM_000551.3	80	AGT/-																																																																														
SETD2	0	MSKCC	GRCh37	3	47125739	47125739	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	136	467	0	ENST00000409792.3:c.5531del	p.Ser1844LeufsTer21	p.S1844Lfs*21	ENST00000409792	NM_014159.6	1844	tCt/tt																																																																														
PRDM1	0	MSKCC	GRCh37	6	106554937	106554937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	179	519	0	ENST00000369096.4:c.2054G>C	p.Arg685Pro	p.R685P	ENST00000369096	NM_001198.3	685	cGg/cCg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	324	729	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	158	843	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
JAK1	0	MSKCC	GRCh37	1	65321369	65321369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	58	677	0	ENST00000342505.4:c.1471G>A	p.Ala491Thr	p.A491T	ENST00000342505	NM_002227.2	491	Gcc/Acc																																																																														
JAK1	0	MSKCC	GRCh37	1	65321371	65321371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	57	664	0	ENST00000342505.4:c.1469G>T	p.Gly490Val	p.G490V	ENST00000342505	NM_002227.2	490	gGt/gTt																																																																														
JAK1	0	MSKCC	GRCh37	1	65321375	65321375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	57	654	0	ENST00000342505.4:c.1465C>A	p.Gln489Lys	p.Q489K	ENST00000342505	NM_002227.2	489	Cag/Aag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3827631	3827631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	39	682	0	ENST00000262367.5:c.2141G>T	p.Arg714Leu	p.R714L	ENST00000262367	NM_004380.2	714	cGc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7579380	7579396	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTTTTCTGGGAAGGG	AGGTTTTCTGGGAAGGG	-			P-0022848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	56	866	1	ENST00000269305.4:c.291_307del	p.Ser99GlyfsTer44	p.S99Gfs*44	ENST00000269305	NM_001126112.2	97	gtCCCTTCCCAGAAAACCTac/gtac																																																																														
APC	324	MSKCC	GRCh37	5	112174577	112174577	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587783029		P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	90	631	0	ENST00000257430.4:c.3286C>T	p.Gln1096Ter	p.Q1096*	ENST00000257430	NM_000038.5	1096	Cag/Tag																																																																														
RAF1	0	MSKCC	GRCh37	3	12645693	12645693	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	48	432	0	ENST00000251849.4:c.776C>G	p.Ser259Cys	p.S259C	ENST00000251849	NM_002880.3	259	tCc/tGc																																																																														
PREX2	0	MSKCC	GRCh37	8	69031691	69031691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	213	770	3	ENST00000288368.4:c.3446G>A	p.Arg1149His	p.R1149H	ENST00000288368	NM_024870.2	1149	cGc/cAc																																																																														
ATM	0	MSKCC	GRCh37	11	108151890	108151890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	68	548	0	ENST00000278616.4:c.3571A>G	p.Lys1191Glu	p.K1191E	ENST00000278616	NM_000051.3	1191	Aaa/Gaa																																																																														
SETD2	0	MSKCC	GRCh37	3	47161968	47161968	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	33	581	0	ENST00000409792.3:c.4158del	p.Asp1388IlefsTer6	p.D1388Ifs*6	ENST00000409792	NM_014159.6	1386	aaG/aa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026184	71026184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	76	601	0	ENST00000318789.4:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000318789	NM_032682.5	480	Gaa/Aaa																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27840014	27840014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	79	575	0	ENST00000328488.2:c.80G>T	p.Arg27Leu	p.R27L	ENST00000328488	NM_003533.2	27	cGc/cTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151860673	151860673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	100	758	0	ENST00000262189.6:c.9989C>T	p.Pro3330Leu	p.P3330L	ENST00000262189	NM_170606.2	3330	cCc/cTc																																																																														
PREX2	0	MSKCC	GRCh37	8	69104673	69104673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	285	816	0	ENST00000288368.4:c.4517C>T	p.Ser1506Phe	p.S1506F	ENST00000288368	NM_024870.2	1506	tCt/tTt																																																																														
AR	0	MSKCC	GRCh37	X	66765974	66765974	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	145	519	0	ENST00000374690.3:c.986G>C	p.Gly329Ala	p.G329A	ENST00000374690	NM_000044.3	329	gGc/gCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0022847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	294	725	1	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49415856	49415858	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0022847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	284	462	0	ENST00000301067.7:c.16489_16491delATC	p.Ile5497del	p.I5497del	ENST00000301067	NM_003482.3	5497	ATC/-																																																																														
CYLD	0	MSKCC	GRCh37	16	50784001	50784001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	83	707	0	ENST00000398568.2:c.392T>A	p.Val131Glu	p.V131E	ENST00000398568	NM_001042412.1	131	gTg/gAg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72984673	72984673	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	136	754	0	ENST00000268489.5:c.2911C>G	p.Leu971Val	p.L971V	ENST00000268489	NM_006885.3	971	Ctg/Gtg																																																																														
STK11	0	MSKCC	GRCh37	19	1221322	1221322	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	194	674	0	ENST00000326873.7:c.845T>G	p.Leu282Arg	p.L282R	ENST00000326873	NM_000455.4	282	cTc/cGc																																																																														
SETD2	0	MSKCC	GRCh37	3	47163429	47163429	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	53	391	0	ENST00000409792.3:c.2697A>C	p.Lys899Asn	p.K899N	ENST00000409792	NM_014159.6	899	aaA/aaC																																																																														
HGF	0	MSKCC	GRCh37	7	81335628	81335628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	85	563	0	ENST00000222390.5:c.1732G>T	p.Asp578Tyr	p.D578Y	ENST00000222390	NM_000601.4	578	Gat/Tat																																																																														
TRAF2	0	MSKCC	GRCh37	9	139820303	139820303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	115	787	0	ENST00000247668.2:c.1456C>T	p.Arg486Trp	p.R486W	ENST00000247668	NM_021138.3	486	Cgg/Tgg																																																																														
BCOR	0	MSKCC	GRCh37	X	39937117	39937117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	64	926	0	ENST00000378444.4:c.66G>T	p.Met22Ile	p.M22I	ENST00000378444	NM_001123385.1	22	atG/atT																																																																														
TBX3	0	MSKCC	GRCh37	12	115112164	115112164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	58	875	1	ENST00000257566.3:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000257566	NM_016569.3	526	Gcc/Acc																																																																														
DICER1	0	MSKCC	GRCh37	14	95566172	95566172	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	48	670	0	ENST00000343455.3:c.4151del	p.Gly1384ValfsTer3	p.G1384Vfs*3	ENST00000343455	NM_177438.2	1384	gGt/gt																																																																														
TP53	0	MSKCC	GRCh37	17	7577101	7577102	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	108	880	0	ENST00000269305.4:c.836_837delinsAT	p.Gly279Asp	p.G279D	ENST00000269305	NM_001126112.2	279	gGG/gAT																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600471	10600471	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	156	822	0	ENST00000171111.5:c.1384G>C	p.Gly462Arg	p.G462R	ENST00000171111	NM_203500.1	462	Ggg/Cgg																																																																														
XPO1	0	MSKCC	GRCh37	2	61721190	61721190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	90	559	0	ENST00000401558.2:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000401558	NM_003400.3	362	Gaa/Aaa																																																																														
EP300	0	MSKCC	GRCh37	22	41546073	41546073	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			961	206	734	0	ENST00000263253.7:c.2688A>C	p.Gln896His	p.Q896H	ENST00000263253	NM_001429.3	896	caA/caC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	190	776	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FANCA	0	MSKCC	GRCh37	16	89815074	89815074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	42	645	0	ENST00000389301.3:c.3341C>G	p.Ser1114Cys	p.S1114C	ENST00000389301	NM_000135.2	1114	tCt/tGt																																																																														
ERBB4	0	MSKCC	GRCh37	2	212652822	212652822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	96	647	0	ENST00000342788.4:c.484C>T	p.His162Tyr	p.H162Y	ENST00000342788	NM_005235.2	162	Cat/Tat																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178948071	178948071	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	60	502	0	ENST00000263967.3:c.2843A>C	p.Lys948Thr	p.K948T	ENST00000263967	NM_006218.2	948	aAa/aCa																																																																														
PRDM14	0	MSKCC	GRCh37	8	70980503	70980503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	119	865	1	ENST00000276594.2:c.874G>A	p.Glu292Lys	p.E292K	ENST00000276594	NM_024504.3	292	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577131	7577140	+	protein_altering_variant	In_Frame_Del	DEL	GCTGTTCCGT	GCTGTTCCGT	A			P-0022808-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	102	753	0	ENST00000269305.4:c.798_807delinsT	p.Arg267_Ser269del	p.R267_S269del	ENST00000269305	NM_001126112.2	266	ggACGGAACAGC/ggT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	10	959	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	8	543	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0022792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	12	663	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
BCL2L1	0	MSKCC	GRCh37	20	30309565	30309565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	16	752	2	ENST00000307677.4:c.457G>A	p.Glu153Lys	p.E153K	ENST00000307677	NM_138578.1	153	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	74	749	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106710	27106710	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	66	725	1	ENST00000324856.7:c.6324del	p.Asn2109MetfsTer26	p.N2109Mfs*26	ENST00000324856	NM_006015.4	2107	ggC/gg																																																																														
PAK1	0	MSKCC	GRCh37	11	77047232	77047232	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	80	681	1	ENST00000356341.3:c.1312C>T	p.Arg438Ter	p.R438*	ENST00000356341	NM_002576.4	438	Cga/Tga																																																																														
FLT1	0	MSKCC	GRCh37	13	28896455	28896455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	72	574	1	ENST00000282397.4:c.2995C>A	p.Leu999Met	p.L999M	ENST00000282397	NM_002019.4	999	Ctg/Atg																																																																														
FLT1	0	MSKCC	GRCh37	13	28971157	28971157	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	54	627	0	ENST00000282397.4:c.1600A>T	p.Ile534Phe	p.I534F	ENST00000282397	NM_002019.4	534	Att/Ttt																																																																														
PALB2	0	MSKCC	GRCh37	16	23641155	23641155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	96	790	0	ENST00000261584.4:c.2320A>G	p.Lys774Glu	p.K774E	ENST00000261584	NM_024675.3	774	Aaa/Gaa																																																																														
STK11	0	MSKCC	GRCh37	19	1219391	1219391	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	76	769	0	ENST00000326873.7:c.443T>C	p.Phe148Ser	p.F148S	ENST00000326873	NM_000455.4	148	tTc/tCc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2206758	2206758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	87	673	0	ENST00000398665.3:c.818C>A	p.Ala273Glu	p.A273E	ENST00000398665	NM_032482.2	273	gCa/gAa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226504	2226504	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	99	943	0	ENST00000398665.3:c.3984A>T	p.Leu1328Phe	p.L1328F	ENST00000398665	NM_032482.2	1328	ttA/ttT																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15298005	15298005	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	83	929	2	ENST00000263388.2:c.1751A>G	p.Asp584Gly	p.D584G	ENST00000263388	NM_000435.2	584	gAc/gGc																																																																														
ERF	0	MSKCC	GRCh37	19	42752648	42752648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	124	743	0	ENST00000222329.4:c.1616C>T	p.Ala539Val	p.A539V	ENST00000222329	NM_006494.2	539	gCc/gTc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99156038	99156038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	90	750	0	ENST00000074304.5:c.718G>A	p.Gly240Ser	p.G240S	ENST00000074304	NM_001134224.1	240	Ggt/Agt																																																																														
KIT	0	MSKCC	GRCh37	4	55524211	55524211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	70	737	0	ENST00000288135.5:c.30T>A	p.Phe10Leu	p.F10L	ENST00000288135	NM_000222.2	10	ttT/ttA																																																																														
KDR	0	MSKCC	GRCh37	4	55964343	55964343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	71	663	0	ENST00000263923.4:c.2470G>T	p.Ala824Ser	p.A824S	ENST00000263923	NM_002253.2	824	Gcc/Tcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	676	805	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	197	887	1	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																																																														
EGFR	0	MSKCC	GRCh37	7	55259554	55259554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	643	777	0	ENST00000275493.2:c.2612C>G	p.Ala871Gly	p.A871G	ENST00000275493	NM_005228.3	871	gCa/gGa																																																																														
TSC2	0	MSKCC	GRCh37	16	2129574	2129574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	187	961	0	ENST00000219476.3:c.3301C>A	p.His1101Asn	p.H1101N	ENST00000219476	NM_000548.3	1101	Cat/Aat																																																																														
POLD1	5424	MSKCC	GRCh37	19	50918125	50918127	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs763850764		P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	164	976	0	ENST00000440232.2:c.2446_2448del	p.Ser816del	p.S816del	ENST00000440232	NM_002691.3	814	ttCTCc/ttc																																																																														
MDC1	0	MSKCC	GRCh37	6	30673635	30673635	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	190	925	0	ENST00000376406.3:c.3325A>T	p.Thr1109Ser	p.T1109S	ENST00000376406	NM_014641.2	1109	Act/Tct																																																																														
PAX5	0	MSKCC	GRCh37	9	37020657	37020657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022809-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	129	626	0	ENST00000358127.4:c.188G>C	p.Gly63Ala	p.G63A	ENST00000358127	NM_001280556.1	63	gGt/gCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	23	775	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7579357	7579358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTT			P-0022793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	28	780	0	ENST00000269305.4:c.329_330insAAAG	p.Leu111LysfsTer39	p.L111Kfs*39	ENST00000269305	NM_001126112.2	110	cgt/cgAAAGt																																																																														
JAK2	0	MSKCC	GRCh37	9	5126409	5126409	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	27	503	0	ENST00000381652.3:c.3254A>G	p.Asn1085Ser	p.N1085S	ENST00000381652	NM_004972.3	1085	aAt/aGt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	39	490	0	ENST00000304494.5:c.341C>G	p.Pro114Arg	p.P114R	ENST00000304494	NM_000077.4	114	cCc/cGc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	39	490	0	ENST00000304494.5:c.341C>G	p.Pro114Arg	p.P114R	ENST00000304494	NM_000077.4	114	cCc/cGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	214	948	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag																																																																														
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	88	550	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																																																														
ARID1B	0	MSKCC	GRCh37	6	157469898	157469898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	402	743	0	ENST00000346085.5:c.2692C>T	p.Arg898Ter	p.R898*	ENST00000346085	NM_020732.3	898	Cga/Tga																																																																														
MAP2K4	6416	MSKCC	GRCh37	17	11923761	11924268	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	TGTGTTAGCGACTGGAGGAGAAAGGGATCCCTGGGATCCTTTTCAGCTTTACTATTCTGATTTGGGGTTCTGAGATTCCAACAAAGTGGACTTTTGGGAGTCACAGACCTCCATGGGAATGATGAAAGCTGCGTACCTTCTTTCCGCACAAATGCAGGCCCACCTTTAATTCTGCAAACCACTTTAGGCCCCGCGGGCCCGCAGCCCTGGTCCAAGACAGCTGTCTGCTTCACAGGTCGCGCACCCAGAGCCGGGCGGTTCTGCAGCTCAGCATCTGGCCCGGGCTGCGCGTCGGGCTCTGGCGGGGGCGTGTCAGGAGGCGTGTCCGGGGCGTGTCGGAGGCGGGGCCAAGGCGGGGGTAAGCCTCGCCCCTCGGCCGTGCGAGAGGCCGAGCTTGCTGCATTGCAGCCGCCGCGGCGCCGCTCGGCTCTTCACTCCCAACAATGGCGGCTCCGAGCCCGAGCGGCGGCGGCGGCTCCGGGGGCGGCAGCGGCAGCGGCACCCCCGG	TGTGTTAGCGACTGGAGGAGAAAGGGATCCCTGGGATCCTTTTCAGCTTTACTATTCTGATTTGGGGTTCTGAGATTCCAACAAAGTGGACTTTTGGGAGTCACAGACCTCCATGGGAATGATGAAAGCTGCGTACCTTCTTTCCGCACAAATGCAGGCCCACCTTTAATTCTGCAAACCACTTTAGGCCCCGCGGGCCCGCAGCCCTGGTCCAAGACAGCTGTCTGCTTCACAGGTCGCGCACCCAGAGCCGGGCGGTTCTGCAGCTCAGCATCTGGCCCGGGCTGCGCGTCGGGCTCTGGCGGGGGCGTGTCAGGAGGCGTGTCCGGGGCGTGTCGGAGGCGGGGCCAAGGCGGGGGTAAGCCTCGCCCCTCGGCCGTGCGAGAGGCCGAGCTTGCTGCATTGCAGCCGCCGCGGCGCCGCTCGGCTCTTCACTCCCAACAATGGCGGCTCCGAGCCCGAGCGGCGGCGGCGGCTCCGGGGGCGGCAGCGGCAGCGGCACCCCCGG	-			P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1	117	0	0				ENST00000353533	NM_003010.3			1/11																																																																													
NF1	0	MSKCC	GRCh37	17	29554626	29554626	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	108	418	0	ENST00000358273.4:c.2409+2T>G		p.X803_splice	ENST00000358273	NM_001042492.2	803																																																																															
KEAP1	0	MSKCC	GRCh37	19	10599871	10599871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	265	1000	0	ENST00000171111.5:c.1705C>T	p.Leu569Phe	p.L569F	ENST00000171111	NM_203500.1	569	Ctt/Ttt																																																																														
JAK3	0	MSKCC	GRCh37	19	17950433	17950433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	227	841	1	ENST00000458235.1:c.1294C>T	p.Arg432Cys	p.R432C	ENST00000458235	NM_000215.3	432	Cgc/Tgc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93955112	93955112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	91	715	0	ENST00000369303.4:c.2786G>A	p.Gly929Glu	p.G929E	ENST00000369303	NM_004440.3	929	gGa/gAa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602746	10602746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	237	1156	0	ENST00000171111.5:c.832C>T	p.Pro278Ser	p.P278S	ENST00000171111	NM_203500.1	278	Ccg/Tcg																																																																														
TP53	0	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1107	198	1099	2	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023577	27023592	+	frameshift_variant	Frame_Shift_Del	DEL	CCTACGCGCTGAGCTC	CCTACGCGCTGAGCTC	-			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1405	119	1093	0	ENST00000324856.7:c.685_700del	p.Tyr229ArgfsTer129	p.Y229Rfs*129	ENST00000324856	NM_006015.4	228	gCCTACGCGCTGAGCTCc/gc																																																																														
ATM	0	MSKCC	GRCh37	11	108124762	108124762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	18	440	0	ENST00000278616.4:c.2120C>G	p.Ser707Cys	p.S707C	ENST00000278616	NM_000051.3	707	tCt/tGt																																																																														
ASXL2	0	MSKCC	GRCh37	2	25982474	25982474	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	105	611	0	ENST00000435504.4:c.816G>T	p.Glu272Asp	p.E272D	ENST00000435504		272	gaG/gaT																																																																														
PBRM1	0	MSKCC	GRCh37	3	52676042	52676042	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	99	755	1	ENST00000394830.3:c.1015G>T	p.Gly339Ter	p.G339*	ENST00000394830	NM_018313.4	339	Gga/Tga																																																																														
INPP4B	0	MSKCC	GRCh37	4	143045869	143045870	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	73	733	0	ENST00000262992.4:c.1764_1765delinsAT	p.Asp589Tyr	p.D589Y	ENST00000262992	NM_001101669.1	588	aaGGac/aaATac																																																																														
KMT2C	0	MSKCC	GRCh37	7	151947021	151947021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022819-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	24	727	0	ENST00000262189.6:c.1753G>A	p.Glu585Lys	p.E585K	ENST00000262189	NM_170606.2	585	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	142	1046	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
MEN1	0	MSKCC	GRCh37	11	64577334	64577334	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022720-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	125	849	0	ENST00000337652.1:c.248del	p.Leu83ArgfsTer36	p.L83Rfs*36	ENST00000337652	NM_130803.2	83	cTg/cg																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0022797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	129	427	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
MLH1	0	MSKCC	GRCh37	3	37092047	37092047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	39	713	0	ENST00000231790.2:c.2174G>A	p.Arg725His	p.R725H	ENST00000231790	NM_000249.3	725	cGc/cAc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	88	882	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	251	721	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41385182	41385182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	240	814	0	ENST00000373198.4:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000373198	NM_133170.3	260	cGg/cAg																																																																														
KDR	0	MSKCC	GRCh37	4	55972009	55972009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	53	581	3	ENST00000263923.4:c.1635C>A	p.Phe545Leu	p.F545L	ENST00000263923	NM_002253.2	545	ttC/ttA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	90	731	2	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	358	826	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	328	804	3	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114905788	114905788	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	167	683	0	ENST00000543371.1:c.807C>G	p.Tyr269Ter	p.Y269*	ENST00000543371	NM_001198531.1	269	taC/taG																																																																														
GLI1	0	MSKCC	GRCh37	12	57858985	57858985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142957882		P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	189	850	6	ENST00000228682.2:c.481C>T	p.Arg161Trp	p.R161W	ENST00000228682	NM_005269.2	161	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	418	898	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257633	19257633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	196	942	5	ENST00000162023.5:c.593C>T	p.Pro198Leu	p.P198L	ENST00000162023		198	cCc/cTc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36228778	36228778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	172	786	1	ENST00000222270.7:c.7677G>T	p.Glu2559Asp	p.E2559D	ENST00000222270	NM_014727.1	2559	gaG/gaT																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100975	41100975	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	297	690	2	ENST00000373198.4:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000373198	NM_133170.3	461	Cga/Tga																																																																														
KDR	0	MSKCC	GRCh37	4	55958788	55958788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	131	695	0	ENST00000263923.4:c.3065G>A	p.Arg1022Gln	p.R1022Q	ENST00000263923	NM_002253.2	1022	cGa/cAa																																																																														
APC	0	MSKCC	GRCh37	5	112174241	112174241	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	101	518	2	ENST00000257430.4:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000257430	NM_000038.5	984	Gaa/Taa																																																																														
IKBKE	0	MSKCC	GRCh37	1	206658563	206658563	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	233	647	0	ENST00000367120.3:c.1536T>G	p.Asn512Lys	p.N512K	ENST00000367120	NM_014002.3	512	aaT/aaG																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061214	38061214	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	100	598	0	ENST00000250448.2:c.775T>A	p.Tyr259Asn	p.Y259N	ENST00000250448	NM_004496.3	259	Tac/Aac																																																																														
CDK12	0	MSKCC	GRCh37	17	37618626	37618627	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	303	784	0	ENST00000447079.4:c.302_303insT	p.Ser102IlefsTer25	p.S102Ifs*25	ENST00000447079	NM_015083.1	101	gga/ggTa																																																																														
CDK12	0	MSKCC	GRCh37	17	37657501	37657501	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0022798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	232	579	0	ENST00000447079.4:c.2420-2A>G		p.X807_splice	ENST00000447079	NM_015083.1	807																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	190	1181	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
AXIN1	0	MSKCC	GRCh37	16	360001	360001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	161	1178	0	ENST00000262320.3:c.1088A>G	p.Asn363Ser	p.N363S	ENST00000262320	NM_003502.3	363	aAt/aGt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266846	198266846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	135	932	0	ENST00000335508.6:c.2086G>A	p.Asp696Asn	p.D696N	ENST00000335508	NM_012433.2	696	Gat/Aat																																																																														
NF2	0	MSKCC	GRCh37	22	30050682	30050682	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	28	602	2	ENST00000338641.4:c.488del	p.Leu163TrpfsTer11	p.L163Wfs*11	ENST00000338641	NM_000268.3	162	Ttt/tt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56111435	56111435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022812-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	75	500	0	ENST00000399503.3:c.35C>T	p.Ser12Leu	p.S12L	ENST00000399503	NM_005921.1	12	tCg/tTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	134	826	3	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0022813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	100	557	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928071	178928097	+	inframe_deletion	In_Frame_Del	DEL	ATGGATTAGAAGATTTGCTGAACCCTA	ATGGATTAGAAGATTTGCTGAACCCTA	-			P-0022813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	56	755	0	ENST00000263967.3:c.1349_1375del	p.His450_Ile459delinsLeu	p.H450_I459delinsL	ENST00000263967	NM_006218.2	450	cATGGATTAGAAGATTTGCTGAACCCTAtt/ctt																																																																														
TP53	0	MSKCC	GRCh37	17	7579722	7579722	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0022813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	315	766	0	ENST00000269305.4:c.75-1G>C		p.X25_splice	ENST00000269305	NM_001126112.2	25																																																																															
NCOR1	0	MSKCC	GRCh37	17	16068438	16068438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	17	137	0	ENST00000268712.3:c.473C>T	p.Ser158Phe	p.S158F	ENST00000268712	NM_006311.3	158	tCt/tTt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2227019	2227019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	505	962	1	ENST00000398665.3:c.4499C>T	p.Ser1500Phe	p.S1500F	ENST00000398665	NM_032482.2	1500	tCt/tTt																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149513503	149513503	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	53	810	0	ENST00000261799.4:c.700del	p.Met234CysfsTer4	p.M234Cfs*4	ENST00000261799	NM_002609.3	234	Atg/tg																																																																														
MYC	0	MSKCC	GRCh37	8	128752968	128752969	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGAGCGCCAGAGGAGGAACGAGC			P-0022813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	215	624	0	ENST00000377970.2:c.1131_1154dup	p.Glu378_Leu385dup	p.E378_L385dup	ENST00000377970	NM_002467.4	378	ttg/tTGGAGCGCCAGAGGAGGAACGAGCtg																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	186	768	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0022818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	218	751	3	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66535450	66535450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	93	709	0	ENST00000273854.3:c.11C>T	p.Ser4Leu	p.S4L	ENST00000273854	NM_004439.5	4	tCg/tTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16261631	16261631	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	152	730	0	ENST00000375759.3:c.8896C>G	p.Leu2966Val	p.L2966V	ENST00000375759	NM_015001.2	2966	Ctt/Gtt																																																																														
PGR	0	MSKCC	GRCh37	11	100999104	100999104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022818-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	58	877	1	ENST00000325455.5:c.698C>T	p.Ala233Val	p.A233V	ENST00000325455	NM_001202474.3	233	gCg/gTg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913559	32913559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	76	710	3	ENST00000380152.3:c.5073del	p.Lys1691AsnfsTer15	p.K1691Nfs*15	ENST00000380152		1689	gcA/gc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	47	589	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	30	514	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	78	654	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	51	774	2	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	35	556	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
MED12	0	MSKCC	GRCh37	X	70356326	70356326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	74	751	1	ENST00000374080.3:c.5221C>T	p.Pro1741Ser	p.P1741S	ENST00000374080		1741	Cca/Tca																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	39	451	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																																																														
ATRX	0	MSKCC	GRCh37	X	76874314	76874314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	70	980	1	ENST00000373344.5:c.5408G>A	p.Arg1803His	p.R1803H	ENST00000373344	NM_000489.3	1803	cGt/cAt																																																																														
GATA2	0	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	81	1000	1	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	25	355	1	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	87	588	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
EPHA3	0	MSKCC	GRCh37	3	89445005	89445005	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112239794		P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	104	730	2	ENST00000336596.2:c.1325C>T	p.Thr442Met	p.T442M	ENST00000336596	NM_005233.5	442	aCg/aTg																																																																														
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	88	482	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074255	8074255	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	35	597	0	ENST00000377482.5:c.404delA	p.Asn135ThrfsTer40	p.N135Tfs*40	ENST00000377482	NM_018948.3	135	aAc/ac																																																																														
PBRM1	0	MSKCC	GRCh37	3	52588798	52588798	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	52	646	0	ENST00000394830.3:c.4230del	p.Pro1411LeufsTer21	p.P1411Lfs*21	ENST00000394830	NM_018313.4	1410	ggG/gg																																																																														
PBRM1	55193	MSKCC	GRCh37	3	52682400	52682400	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	54	773	0	ENST00000394830.3:c.773del	p.Asn258MetfsTer25	p.N258Mfs*25	ENST00000394830	NM_018313.4	258	aAt/at																																																																														
TNFAIP3	7128	MSKCC	GRCh37	6	138202351	138202351	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	104	681	0	ENST00000237289.4:c.2274del	p.Lys759SerfsTer57	p.K759Sfs*57	ENST00000237289	NM_001270507.1	756	gaC/ga																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821614	72821614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	12	39	0	ENST00000268489.5:c.10561G>A	p.Gly3521Ser	p.G3521S	ENST00000268489	NM_006885.3	3521	Ggc/Agc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372238	55372238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	53	478	0	ENST00000297316.4:c.928G>A	p.Gly310Ser	p.G310S	ENST00000297316	NM_022454.3	310	Ggc/Agc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	75	783	4	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																																																														
EPAS1	0	MSKCC	GRCh37	2	46602913	46602913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	62	817	1	ENST00000263734.3:c.971C>T	p.Thr324Met	p.T324M	ENST00000263734	NM_001430.4	324	aCg/aTg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201815	66201815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	49	673	2	ENST00000273854.3:c.2687G>A	p.Arg896His	p.R896H	ENST00000273854	NM_004439.5	896	cGt/cAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431746	49431748	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	61	746	0	ENST00000301067.7:c.9391_9393del	p.Pro3131del	p.P3131del	ENST00000301067	NM_003482.3	3131	CCT/-																																																																														
SDHA	0	MSKCC	GRCh37	5	233751	233751	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199844384		P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	68	744	3	ENST00000264932.6:c.1055G>A	p.Arg352Gln	p.R352Q	ENST00000264932	NM_004168.2	352	cGa/cAa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157405960	157405960	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	58	708	0	ENST00000346085.5:c.2204delC	p.Pro735HisfsTer10	p.P735Hfs*10	ENST00000346085	NM_020732.3	734	ggC/gg																																																																														
SDHB	0	MSKCC	GRCh37	1	17349144	17349144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	59	763	1	ENST00000375499.3:c.724C>T	p.Arg242Cys	p.R242C	ENST00000375499	NM_003000.2	242	Cgc/Tgc																																																																														
MPL	0	MSKCC	GRCh37	1	43803535	43803535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	53	765	0	ENST00000372470.3:c.16C>A	p.Leu6Ile	p.L6I	ENST00000372470	NM_005373.2	6	Ctc/Atc																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46531777	46531779	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	65	859	0	ENST00000262741.5:c.568_570del	p.Glu190del	p.E190del	ENST00000262741	NM_003629.3	190	GAG/-																																																																														
CSDE1	0	MSKCC	GRCh37	1	115280096	115280096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	77	814	0	ENST00000438362.2:c.536A>T	p.Asn179Ile	p.N179I	ENST00000438362	NM_001242891.1	179	aAt/aTt																																																																														
BIRC3	0	MSKCC	GRCh37	11	102198790	102198790	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	52	622	0	ENST00000263464.3:c.961T>C	p.Tyr321His	p.Y321H	ENST00000263464	NM_001165.4	321	Tac/Cac																																																																														
ATM	0	MSKCC	GRCh37	11	108115544	108115544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	55	726	0	ENST00000278616.4:c.692A>T	p.His231Leu	p.H231L	ENST00000278616	NM_000051.3	231	cAt/cTt																																																																														
GLI1	0	MSKCC	GRCh37	12	57864655	57864655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	91	944	0	ENST00000228682.2:c.2132C>T	p.Thr711Ile	p.T711I	ENST00000228682	NM_005269.2	711	aCc/aTc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856056	111856056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	58	612	0	ENST00000341259.2:c.107C>T	p.Ala36Val	p.A36V	ENST00000341259	NM_005475.2	36	gCg/gTg																																																																														
DICER1	0	MSKCC	GRCh37	14	95596469	95596469	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	39	710	0	ENST00000343455.3:c.499T>G	p.Ser167Ala	p.S167A	ENST00000343455	NM_177438.2	167	Tca/Gca																																																																														
AKT1	0	MSKCC	GRCh37	14	105239591	105239591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	49	534	0	ENST00000349310.3:c.954del	p.Glu319ArgfsTer24	p.E319Rfs*24	ENST00000349310	NM_001014432.1	318	ccC/cc																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66729187	66729187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	76	896	3	ENST00000307102.5:c.395C>T	p.Ala132Val	p.A132V	ENST00000307102	NM_002755.3	132	gCg/gTg																																																																														
SLX4	0	MSKCC	GRCh37	16	3639237	3639237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	64	887	0	ENST00000294008.3:c.4402C>T	p.Arg1468Cys	p.R1468C	ENST00000294008	NM_032444.2	1468	Cgc/Tgc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781210	3781210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			992	59	783	0	ENST00000262367.5:c.5155C>T	p.His1719Tyr	p.H1719Y	ENST00000262367	NM_004380.2	1719	Cac/Tac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3807815	3807815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	100	558	0	ENST00000262367.5:c.3604C>T	p.Arg1202Cys	p.R1202C	ENST00000262367	NM_004380.2	1202	Cgc/Tgc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817765	3817765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	65	905	3	ENST00000262367.5:c.3206G>A	p.Gly1069Asp	p.G1069D	ENST00000262367	NM_004380.2	1069	gGc/gAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10032303	10032303	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	52	733	0	ENST00000330684.3:c.520A>T	p.Thr174Ser	p.T174S	ENST00000330684	NM_001134407.1	174	Acc/Tcc																																																																														
CDH1	0	MSKCC	GRCh37	16	68846083	68846083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	96	960	1	ENST00000261769.5:c.1054G>A	p.Gly352Ser	p.G352S	ENST00000261769	NM_004360.3	352	Ggt/Agt																																																																														
CDH1	0	MSKCC	GRCh37	16	68853283	68853283	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	76	810	0	ENST00000261769.5:c.1666del	p.Val556Ter	p.V556*	ENST00000261769	NM_004360.3	556	Gtg/tg																																																																														
CALR	0	MSKCC	GRCh37	19	13054628	13054628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	49	512	0	ENST00000316448.5:c.1155G>T	p.Lys385Asn	p.K385N	ENST00000316448	NM_004343.3	385	aaG/aaT																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211109	36211109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1208	87	998	1	ENST00000222270.7:c.860G>A	p.Arg287His	p.R287H	ENST00000222270	NM_014727.1	287	cGt/cAt																																																																														
MSH2	0	MSKCC	GRCh37	2	47641411	47641411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	94	628	0	ENST00000233146.2:c.796G>A	p.Ala266Thr	p.A266T	ENST00000233146	NM_000251.2	266	Gca/Aca																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022791	31022791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	65	650	1	ENST00000375687.4:c.2276G>A	p.Cys759Tyr	p.C759Y	ENST00000375687	NM_015338.5	759	tGc/tAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40877351	40877351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	67	615	0	ENST00000373198.4:c.2345G>A	p.Gly782Asp	p.G782D	ENST00000373198	NM_133170.3	782	gGc/gAc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52637581	52637581	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	55	868	0	ENST00000394830.3:c.2735A>C	p.Lys912Thr	p.K912T	ENST00000394830	NM_018313.4	912	aAa/aCa																																																																														
KIT	0	MSKCC	GRCh37	4	55593392	55593392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	50	560	0	ENST00000288135.5:c.1549C>A	p.His517Asn	p.H517N	ENST00000288135	NM_000222.2	517	Cat/Aat																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201788	66201788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	57	723	0	ENST00000273854.3:c.2714C>A	p.Ala905Asp	p.A905D	ENST00000273854	NM_004439.5	905	gCt/gAt																																																																														
RAC1	0	MSKCC	GRCh37	7	6441611	6441611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	62	656	0	ENST00000356142.4:c.458T>C	p.Leu153Pro	p.L153P	ENST00000356142	NM_018890.3	153	cTg/cCg																																																																														
NBN	0	MSKCC	GRCh37	8	90996774	90996774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	69	629	1	ENST00000265433.3:c.16C>T	p.Pro6Ser	p.P6S	ENST00000265433	NM_002485.4	6	Ccc/Tcc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738997	145738997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	71	758	0	ENST00000428558.2:c.2158C>T	p.Leu720Phe	p.L720F	ENST00000428558	NM_004260.3	720	Ctc/Ttc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139405688	139405688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	64	837	0	ENST00000277541.6:c.2503C>A	p.Pro835Thr	p.P835T	ENST00000277541	NM_017617.3	835	Ccc/Acc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44733169	44733169	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	62	638	1	ENST00000377967.4:c.162-1G>A		p.X54_splice	ENST00000377967	NM_021140.2	54																																																																															
ARAF	0	MSKCC	GRCh37	X	47424387	47424387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	59	665	4	ENST00000377045.4:c.307C>T	p.Arg103Trp	p.R103W	ENST00000377045	NM_001654.4	103	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	80	895	4	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	170	714	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324674	31324674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11546719		P-0022801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	31	465	3	ENST00000412585.2:c.134G>A	p.Arg45His	p.R45H	ENST00000412585	NM_005514.6	45	cGc/cAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49447333	49447333	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	219	833	2	ENST00000301067.7:c.765C>A	p.Cys255Ter	p.C255*	ENST00000301067	NM_003482.3	255	tgC/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0022590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1380	176	1496	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
DDR2	0	MSKCC	GRCh37	1	162748455	162748455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	24	184	0	ENST00000367921.3:c.2369C>A	p.Ser790Tyr	p.S790Y	ENST00000367921	NM_006182.2	790	tCc/tAc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88476307	88476307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	110	985	1	ENST00000360948.2:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000360948	NM_001012338.2	609	Gat/Aat																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0022637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	34	955	3	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118370100	118370100	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	52	392	0	ENST00000534358.1:c.6044A>G	p.Asn2015Ser	p.N2015S	ENST00000534358	NM_005933.3	2015	aAt/aGt																																																																														
SETD2	0	MSKCC	GRCh37	3	47164064	47164064	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	44	430	0	ENST00000409792.3:c.2062A>C	p.Thr688Pro	p.T688P	ENST00000409792	NM_014159.6	688	Act/Cct																																																																														
RYBP	0	MSKCC	GRCh37	3	72495684	72495684	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022641-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	53	511	0	ENST00000477973.2:c.386T>G	p.Cys130Gly	p.C130G	ENST00000477973	NM_012234.5	130	Tgc/Ggc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	116	833	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
CDH1	0	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0022669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	77	448	0	ENST00000261769.5:c.1565+1G>A		p.X522_splice	ENST00000261769	NM_004360.3	522																																																																															
MTOR	0	MSKCC	GRCh37	1	11217348	11217348	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0022669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	88	643	0	ENST00000361445.4:c.4330del	p.Glu1444ArgfsTer33	p.E1444Rfs*33	ENST00000361445	NM_004958.3	1444	Gag/ag																																																																														
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	300	798	0	ENST00000269305.4:c.838delA	p.Arg280GlufsTer65	p.R280Efs*65	ENST00000269305	NM_001126112.2	280	Aga/ga																																																																														
KDM6A	0	MSKCC	GRCh37	X	44937723	44937723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	54	643	0	ENST00000377967.4:c.2911C>T	p.Arg971Cys	p.R971C	ENST00000377967	NM_021140.2	971	Cgt/Tgt																																																																														
TBX3	0	MSKCC	GRCh37	12	115110046	115110046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	119	906	0	ENST00000257566.3:c.1832C>T	p.Ala611Val	p.A611V	ENST00000257566	NM_016569.3	611	gCg/gTg																																																																														
CCND2	0	MSKCC	GRCh37	12	4385308	4385308	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	20	417	0	ENST00000261254.3:c.333A>C	p.Lys111Asn	p.K111N	ENST00000261254	NM_001759.3	111	aaA/aaC																																																																														
MSH6	0	MSKCC	GRCh37	2	48027730	48027730	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	71	435	0	ENST00000234420.5:c.2608A>T	p.Lys870Ter	p.K870*	ENST00000234420	NM_000179.2	870	Aaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	179	895	0	ENST00000269305.4:c.838A>T	p.Arg280Ter	p.R280*	ENST00000269305	NM_001126112.2	280	Aga/Tga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32950869	32950869	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	149	617	0	ENST00000380152.3:c.8695C>T	p.Gln2899Ter	p.Q2899*	ENST00000380152		2899	Caa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	133	458	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
JUN	0	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0022568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	69	920	0	ENST00000371222.2:c.109_110delAG	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0022568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	286	851	0	ENST00000269305.4:c.672+1delG		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
KMT2A	0	MSKCC	GRCh37	11	118343017	118343017	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	57	313	0	ENST00000534358.1:c.1147del	p.Ala383LeufsTer17	p.A383Lfs*17	ENST00000534358	NM_005933.3	381	aaG/aa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434990	49434990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	83	561	1	ENST00000301067.7:c.6563G>A	p.Arg2188His	p.R2188H	ENST00000301067	NM_003482.3	2188	cGc/cAc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168684	56168687	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0022568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	87	578	0	ENST00000399503.3:c.1539_1542del	p.Leu515GlufsTer41	p.L515Efs*41	ENST00000399503	NM_005921.1	513	tCTTCc/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	40	863	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0022643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			54	604	750	7	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
RB1	0	MSKCC	GRCh37	13	48916734	48916734	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0022643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			17	288	520	7	ENST00000267163.4:c.265-1G>A		p.X89_splice	ENST00000267163	NM_000321.2	89																																																																															
FUBP1	0	MSKCC	GRCh37	1	78429281	78429281	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	425	676	2	ENST00000370768.2:c.1161A>T	p.Lys387Asn	p.K387N	ENST00000370768	NM_003902.3	387	aaA/aaT																																																																														
KMT2D	0	MSKCC	GRCh37	12	49422891	49422891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	488	597	4	ENST00000301067.7:c.14204G>T	p.Arg4735Leu	p.R4735L	ENST00000301067	NM_003482.3	4735	cGg/cTg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478852	56478852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	326	918	6	ENST00000267101.3:c.308G>T	p.Arg103Leu	p.R103L	ENST00000267101	NM_001982.3	103	cGc/cTc																																																																														
NF1	0	MSKCC	GRCh37	17	29508467	29508467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	90	504	3	ENST00000358273.4:c.614A>G	p.Lys205Arg	p.K205R	ENST00000358273	NM_001042492.2	205	aAg/aGg																																																																														
U2AF1	0	MSKCC	GRCh37	21	44514590	44514590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	136	447	3	ENST00000291552.4:c.566G>A	p.Arg189His	p.R189H	ENST00000291552	NM_006758.2	189	cGt/cAt																																																																														
SESN1	0	MSKCC	GRCh37	6	109415168	109415168	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	406	1056	6	ENST00000436639.2:c.109G>T	p.Glu37Ter	p.E37*	ENST00000436639	NM_014454.2	37	Gag/Tag																																																																														
PREX2	0	MSKCC	GRCh37	8	69020471	69020471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	379	774	6	ENST00000288368.4:c.2843C>A	p.Pro948His	p.P948H	ENST00000288368	NM_024870.2	948	cCc/cAc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969478	44969478	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022643-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	121	582	2	ENST00000377967.4:c.4160A>G	p.Tyr1387Cys	p.Y1387C	ENST00000377967	NM_021140.2	1387	tAt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	310	659	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	250	713	1	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag																																																																														
KDM5A	0	MSKCC	GRCh37	12	402119	402119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	137	771	0	ENST00000399788.2:c.4672G>C	p.Glu1558Gln	p.E1558Q	ENST00000399788	NM_001042603.1	1558	Gaa/Caa																																																																														
IRS2	0	MSKCC	GRCh37	13	110434505	110434535	+	frameshift_variant	Frame_Shift_Del	DEL	ACGCCCACAGCGCTGATGAGACCCCCGAGGC	ACGCCCACAGCGCTGATGAGACCCCCGAGGC	-			P-0022660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	204	679	0	ENST00000375856.3:c.3866_3896del	p.Ser1289ThrfsTer32	p.S1289Tfs*32	ENST00000375856	NM_003749.2	1289	aGCCTCGGGGGTCTCATCAGCGCTGTGGGCGTc/ac																																																																														
IDH2	0	MSKCC	GRCh37	15	90628575	90628575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	146	716	0	ENST00000330062.3:c.1012G>A	p.Asp338Asn	p.D338N	ENST00000330062	NM_002168.2	338	Gat/Aat																																																																														
DOT1L	0	MSKCC	GRCh37	19	2193759	2193759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	199	675	0	ENST00000398665.3:c.565G>A	p.Asp189Asn	p.D189N	ENST00000398665	NM_032482.2	189	Gac/Aac																																																																														
RTEL1	0	MSKCC	GRCh37	20	62321681	62321681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	95	630	0	ENST00000508582.2:c.2372G>A	p.Ser791Asn	p.S791N	ENST00000508582		791	aGt/aAt																																																																														
INHBA	0	MSKCC	GRCh37	7	41729943	41729944	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0022660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	232	585	1	ENST00000242208.4:c.585_586delinsTA	p.Gly196Ser	p.G196S	ENST00000242208	NM_002192.2	195	gtGGgc/gtTAgc																																																																														
BRAF	0	MSKCC	GRCh37	7	140534572	140534572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	150	498	0	ENST00000288602.6:c.341C>T	p.Ser114Phe	p.S114F	ENST00000288602	NM_004333.4	114	tCt/tTt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53227021	53227021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	140	315	0	ENST00000375401.3:c.2554G>C	p.Glu852Gln	p.E852Q	ENST00000375401	NM_004187.3	852	Gag/Cag																																																																														
FAT1	0	MSKCC	GRCh37	4	187521087	187521094	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCAAGG	TGGCAAGG	A			P-0022660-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	181	400	0	ENST00000441802.2:c.12061_12068delinsT	p.Pro4021Ter	p.P4021*	ENST00000441802	NM_005245.3	4021	CCTTGCCAg/Tg																																																																														
ATRX	0	MSKCC	GRCh37	X	76938173	76938174	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	61	117	0	ENST00000373344.5:c.2574dup	p.Gly859ArgfsTer4	p.G859Rfs*4	ENST00000373344	NM_000489.3	858	-/A																																																																														
CREBBP	0	MSKCC	GRCh37	16	3788638	3788638	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	93	192	0	ENST00000262367.5:c.4316del	p.Phe1439SerfsTer20	p.F1439Sfs*20	ENST00000262367	NM_004380.2	1439	tTc/tc																																																																														
TSC1	0	MSKCC	GRCh37	9	135787825	135787825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	15	366	0	ENST00000298552.3:c.757C>A	p.His253Asn	p.H253N	ENST00000298552	NM_001162426.1	253	Cat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	295	925	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt																																																																														
E2F3	0	MSKCC	GRCh37	6	20483047	20483047	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022640-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	407	415	0	ENST00000346618.3:c.783del	p.Glu262LysfsTer2	p.E262Kfs*2	ENST00000346618	NM_001949.4	260	tcA/tc																																																																														
APC	324	MSKCC	GRCh37	5	112174577	112174577	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587783029		P-0022638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	75	518	0	ENST00000257430.4:c.3286C>T	p.Gln1096Ter	p.Q1096*	ENST00000257430	NM_000038.5	1096	Cag/Tag																																																																														
BRCA2	675	MSKCC	GRCh37	13	32905124	32905127	+	frameshift_variant	Frame_Shift_Del	DEL	GACA	GACA	-	rs1455701926		P-0022638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	98	533	0	ENST00000380152.3:c.755_758del	p.Asp252ValfsTer24	p.D252Vfs*24	ENST00000380152		250	gtGACA/gt																																																																														
SHOC2	0	MSKCC	GRCh37	10	112760179	112760179	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	93	568	0	ENST00000369452.4:c.848T>A	p.Leu283Gln	p.L283Q	ENST00000369452	NM_007373.3	283	cTg/cAg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134967284	134967284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	87	695	0	ENST00000398015.3:c.2623G>T	p.Val875Phe	p.V875F	ENST00000398015	NM_004441.4	875	Gtc/Ttc																																																																														
WHSC1	0	MSKCC	GRCh37	4	1932445	1932463	+	frameshift_variant	Frame_Shift_Del	DEL	CTACAACACCAAGTTTGCC	CTACAACACCAAGTTTGCC	-			P-0022638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	72	807	0	ENST00000382891.5:c.1505_1523del	p.Tyr502TrpfsTer14	p.Y502Wfs*14	ENST00000382891	NM_133335.3	501	cgCTACAACACCAAGTTTGCC/cg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31410944	31410965	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCGCTACCTTGGCCTGAGTT	CTCCGCTACCTTGGCCTGAGTT	-			P-0022638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	87	795	0	ENST00000344624.3:c.3555_3576del	p.Thr1186SerfsTer9	p.T1186Sfs*9	ENST00000344624		1185	agAACTCAGGCCAAGGTAGCGGAG/ag																																																																														
AGO2	0	MSKCC	GRCh37	8	141569508	141569531	+	inframe_deletion	In_Frame_Del	DEL	GTAAACTTTACCCTTTGGGAATCT	GTAAACTTTACCCTTTGGGAATCT	-			P-0022638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	64	679	0	ENST00000220592.5:c.753_776del	p.Asp252_Thr259del	p.D252_T259del	ENST00000220592	NM_012154.3	251	acAGATTCCCAAAGGGTAAAGTTTACc/acc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	154	647	1				ENST00000310581	NM_198253.2																																																																																
EP300	0	MSKCC	GRCh37	22	41572506	41572506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	128	924	0	ENST00000263253.7:c.5035A>G	p.Thr1679Ala	p.T1679A	ENST00000263253	NM_001429.3	1679	Aca/Gca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	13	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0022599-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	25	709	0	ENST00000269305.4:c.672+2T>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0022644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	62	565	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	316	708	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692968	89692968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	17	577	1	ENST00000371953.3:c.452C>A	p.Ala151Asp	p.A151D	ENST00000371953	NM_000314.4	151	gCc/gAc																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165659	118165659	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	28	375	0	ENST00000369448.3:c.169A>T	p.Ser57Cys	p.S57C	ENST00000369448	NM_017709.3	57	Agt/Tgt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30691933	30691934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	65	446	0	ENST00000359013.4:c.510_511insT	p.Asn171Ter	p.N171*	ENST00000359013	NM_001024847.2	170	-/T																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	610	680	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
RB1	0	MSKCC	GRCh37	13	48916850	48916850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	228	426	0	ENST00000267163.4:c.380G>A	p.Ser127Asn	p.S127N	ENST00000267163	NM_000321.2	127	aGt/aAt																																																																														
IRS2	0	MSKCC	GRCh37	13	110437427	110437427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	376	488	0	ENST00000375856.3:c.974A>G	p.His325Arg	p.H325R	ENST00000375856	NM_003749.2	325	cAc/cGc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433142	49433142	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	297	551	0	ENST00000301067.7:c.8230-1G>T		p.X2744_splice	ENST00000301067	NM_003482.3	2744																																																																															
FOXO1	0	MSKCC	GRCh37	13	41133865	41133865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			52	225	285	0	ENST00000379561.5:c.1763G>T	p.Gly588Val	p.G588V	ENST00000379561	NM_002015.3	588	gGc/gTc																																																																														
STAT5B	0	MSKCC	GRCh37	17	40379656	40379656	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	376	694	0	ENST00000293328.3:c.176A>T	p.Gln59Leu	p.Q59L	ENST00000293328	NM_012448.3	59	cAg/cTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5231554	5231554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	147	442	0	ENST00000357368.4:c.1922C>A	p.Pro641Gln	p.P641Q	ENST00000357368	NM_002850.3	641	cCg/cAg																																																																														
TMEM127	0	MSKCC	GRCh37	2	96931038	96931038	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	119	316	0	ENST00000258439.3:c.82G>T	p.Glu28Ter	p.E28*	ENST00000258439	NM_001193304.2	28	Gag/Tag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266810	198266810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	52	603	0	ENST00000335508.6:c.2122G>A	p.Ala708Thr	p.A708T	ENST00000335508	NM_012433.2	708	Gcc/Acc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024372	31024372	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	193	600	0	ENST00000375687.4:c.3857A>T	p.Gln1286Leu	p.Q1286L	ENST00000375687	NM_015338.5	1286	cAg/cTg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52582140	52582140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			50	259	437	1	ENST00000394830.3:c.4688G>T	p.Arg1563Leu	p.R1563L	ENST00000394830	NM_018313.4	1563	cGa/cTa																																																																														
APC	0	MSKCC	GRCh37	5	112175549	112175549	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	233	318	0	ENST00000257430.4:c.4258C>G	p.Pro1420Ala	p.P1420A	ENST00000257430	NM_000038.5	1420	Ccc/Gcc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149515256	149515256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	353	549	0	ENST00000261799.4:c.226G>T	p.Ala76Ser	p.A76S	ENST00000261799	NM_002609.3	76	Gcc/Tcc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176517775	176517775	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	407	758	1	ENST00000292408.4:c.385G>T	p.Asp129Tyr	p.D129Y	ENST00000292408	NM_213647.1	129	Gac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	490	717	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
TET2	0	MSKCC	GRCh37	4	106197506	106197506	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	23	380	1	ENST00000380013.4:c.5844del	p.Val1949Ter	p.V1949*	ENST00000380013	NM_001127208.2	1947	Aaa/aa																																																																														
DAXX	0	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	37	413	0	ENST00000374542.5:c.767G>A	p.Arg256His	p.R256H	ENST00000374542	NM_001141970.1	256	cGc/cAc																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	242	771	0	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120460308	120460308	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	43	566	1	ENST00000256646.2:c.6007C>T	p.Arg2003Ter	p.R2003*	ENST00000256646	NM_024408.3	2003	Cga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	48934189	48934189	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	76	508	0	ENST00000267163.4:c.644C>A	p.Ser215Ter	p.S215*	ENST00000267163	NM_000321.2	215	tCa/tAa																																																																														
TRAF7	0	MSKCC	GRCh37	16	2223817	2223817	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	211	843	2	ENST00000326181.6:c.1115T>C	p.Leu372Pro	p.L372P	ENST00000326181	NM_032271.2	372	cTg/cCg																																																																														
TP53	0	MSKCC	GRCh37	17	7579379	7579379	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	148	810	2	ENST00000269305.4:c.308A>G	p.Tyr103Cys	p.Y103C	ENST00000269305	NM_001126112.2	103	tAc/tGc																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7976261	7976261	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			79	199	422	0	ENST00000319144.4:c.1934T>G	p.Leu645Arg	p.L645R	ENST00000319144	NM_001139.2	645	cTg/cGg																																																																														
YES1	0	MSKCC	GRCh37	18	756677	756677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	138	598	2	ENST00000314574.4:c.151G>A	p.Ala51Thr	p.A51T	ENST00000314574	NM_005433.3	51	Gca/Aca																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610610	10610610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	47	697	0	ENST00000171111.5:c.100G>A	p.Ala34Thr	p.A34T	ENST00000171111	NM_203500.1	34	Gcc/Acc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99163122	99163123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	34	537	0	ENST00000074304.5:c.1133dup	p.Leu379AlafsTer5	p.L379Afs*5	ENST00000074304	NM_001134224.1	376	-/A																																																																														
SETD2	0	MSKCC	GRCh37	3	47144835	47144836	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	22	626	0	ENST00000409792.3:c.4917dup	p.Trp1640MetfsTer26	p.W1640Mfs*26	ENST00000409792	NM_014159.6	1639	-/A																																																																														
TET2	0	MSKCC	GRCh37	4	106158446	106158447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	60	297	0	ENST00000380013.4:c.3353dup	p.Asn1118LysfsTer12	p.N1118Kfs*12	ENST00000380013	NM_001127208.2	1116	ata/atAa																																																																														
TERT	0	MSKCC	GRCh37	5	1272316	1272316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	64	681	0	ENST00000310581.5:c.2366C>T	p.Ala789Val	p.A789V	ENST00000310581	NM_198253.2	789	gCc/gTc																																																																														
APC	0	MSKCC	GRCh37	5	112176193	112176193	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	118	435	0	ENST00000257430.4:c.4906del	p.Asp1636MetfsTer14	p.D1636Mfs*14	ENST00000257430	NM_000038.5	1634	ccG/cc																																																																														
E2F3	0	MSKCC	GRCh37	6	20490627	20490627	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	182	563	0	ENST00000346618.3:c.1364A>G	p.Lys455Arg	p.K455R	ENST00000346618	NM_001949.4	455	aAg/aGg																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225632	26225632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	200	678	2	ENST00000360408.1:c.250C>T	p.Arg84Cys	p.R84C	ENST00000360408	NM_003532.2	84	Cgc/Tgc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391698	139391699	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	190	866	0	ENST00000277541.6:c.6492dup	p.Gly2165ArgfsTer103	p.G2165Rfs*103	ENST00000277541	NM_017617.3	2164	-/A																																																																														
ZRSR2	0	MSKCC	GRCh37	X	15840961	15840961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	22	220	0	ENST00000307771.7:c.1045T>C	p.Ser349Pro	p.S349P	ENST00000307771	NM_005089.3	349	Tct/Cct																																																																														
ARID2	0	MSKCC	GRCh37	12	46230655	46230949	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATGTTAAGCTCTTGGCAGCTAATCGTACCTGTCTTCGTTTCCTATTACTTTCTGCACATAGTCATTTTATTTCTTTAAGGCAATTAGGCCTTGACACATTAGGAAATATTGCAGCTGAGGTAAGCATGTGACTGTACCTTAAACTAGTTTTTATAGTTAGCAACATTTATGTTACAATTTTAGGATGTGGCATTTTATAGTTGCCATATTTATAGACTATTAAATGCTTACATGTATTAGTTGCTAAAAATGGTGATGTAGAAGTATCACATACTTTTATGGAAAAAAGTATTT	AATGTTAAGCTCTTGGCAGCTAATCGTACCTGTCTTCGTTTCCTATTACTTTCTGCACATAGTCATTTTATTTCTTTAAGGCAATTAGGCCTTGACACATTAGGAAATATTGCAGCTGAGGTAAGCATGTGACTGTACCTTAAACTAGTTTTTATAGTTAGCAACATTTATGTTACAATTTTAGGATGTGGCATTTTATAGTTGCCATATTTATAGACTATTAAATGCTTACATGTATTAGTTGCTAAAAATGGTGATGTAGAAGTATCACATACTTTTATGGAAAAAAGTATTT	-			P-0022569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	68	637	0	ENST00000334344.6:c.904_1024-155del		p.X302_splice	ENST00000334344	NM_152641.2	302																																																																															
GREM1	0	MSKCC	GRCh37	15	33023329	33023337	+	inframe_deletion	In_Frame_Del	DEL	CAAGAAATT	CAAGAAATT	-			P-0022569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	73	979	0	ENST00000300177.4:c.440_448del	p.Lys147_Phe149del	p.K147_F149del	ENST00000300177	NM_001191322.1	146	ccCAAGAAATTc/ccc																																																																														
NUP93	0	MSKCC	GRCh37	16	56870591	56870591	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	148	644	0	ENST00000308159.5:c.1861C>A	p.Leu621Met	p.L621M	ENST00000308159	NM_014669.4	621	Ctg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7578510	7578515	+	inframe_deletion	In_Frame_Del	DEL	GGTCTT	GGTCTT	-			P-0022569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	532	1055	0	ENST00000269305.4:c.415_420del	p.Lys139_Thr140del	p.K139_T140del	ENST00000269305	NM_001126112.2	139	AAGACC/-																																																																														
GATA2	0	MSKCC	GRCh37	3	128200161	128200161	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0022569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	188	740	1	ENST00000341105.2:c.1144G>T	p.Val382Phe	p.V382F	ENST00000341105	NM_032638.4	382	Gtt/Ttt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0022646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	145	637	1				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	96	346	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022441	31022441	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	27	218	0	ENST00000375687.4:c.1926del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	642	ggA/gg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63850820	63850820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	86	392	0	ENST00000279873.7:c.1598C>T	p.Ala533Val	p.A533V	ENST00000279873	NM_032199.2	533	gCg/gTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49437462	49437462	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	215	678	1	ENST00000301067.7:c.5423del	p.Gly1808GlufsTer44	p.G1808Efs*44	ENST00000301067	NM_003482.3	1808	gGa/ga																																																																														
POLE	0	MSKCC	GRCh37	12	133245525	133245525	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0022646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	104	365	0	ENST00000320574.5:c.1795G>T	p.Val599Leu	p.V599L	ENST00000320574	NM_006231.2	599	Gtg/Ttg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350360	89350360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	85	778	0	ENST00000301030.4:c.2590G>A	p.Asp864Asn	p.D864N	ENST00000301030	NM_001256183.1	864	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7577572	7577573	+	stop_gained	Nonsense_Mutation	DNP	TG	TG	AC			P-0022646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	125	639	1	ENST00000269305.4:c.708_709delinsGT	p.Tyr236_Met237delinsTer	p.Y236_M237delins*	ENST00000269305	NM_001126112.2	236	taCAtg/taGTtg																																																																														
EP300	0	MSKCC	GRCh37	22	41546050	41546050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	182	752	0	ENST00000263253.7:c.2665C>A	p.Pro889Thr	p.P889T	ENST00000263253	NM_001429.3	889	Cca/Aca																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178020	56178020	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	28	441	0	ENST00000399503.3:c.2993C>G	p.Ala998Gly	p.A998G	ENST00000399503	NM_005921.1	998	gCa/gGa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099508	157099508	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	55	416	0	ENST00000346085.5:c.445C>G	p.Gln149Glu	p.Q149E	ENST00000346085	NM_020732.3	149	Cag/Gag																																																																														
NBN	0	MSKCC	GRCh37	8	90965795	90965795	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	28	346	0	ENST00000265433.3:c.1522C>G	p.Leu508Val	p.L508V	ENST00000265433	NM_002485.4	508	Cta/Gta																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	264	722	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	238	528	2	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0022667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	157	370	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925634	114925641	+	frameshift_variant	Frame_Shift_Del	DEL	CAATTGCA	CAATTGCA	-			P-0022667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	114	777	0	ENST00000543371.1:c.1714_1721del	p.Ile572AlafsTer34	p.I572Afs*34	ENST00000543371	NM_001198531.1	571	tCAATTGCA/t																																																																														
EPHA7	0	MSKCC	GRCh37	6	94066509	94066509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	100	346	0	ENST00000369303.4:c.1250C>T	p.Ala417Val	p.A417V	ENST00000369303	NM_004440.3	417	gCt/gTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	344	800	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	387	711	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
APC	0	MSKCC	GRCh37	5	112170862	112170862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	237	505	0	ENST00000257430.4:c.1958G>A	p.Arg653Lys	p.R653K	ENST00000257430	NM_000038.5	653	aGg/aAg																																																																														
DDR2	0	MSKCC	GRCh37	1	162725021	162725021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	176	529	0	ENST00000367921.3:c.493C>T	p.Arg165Trp	p.R165W	ENST00000367921	NM_006182.2	165	Cgg/Tgg																																																																														
KDR	0	MSKCC	GRCh37	4	55955094	55955094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	162	618	0	ENST00000263923.4:c.3451C>T	p.Pro1151Ser	p.P1151S	ENST00000263923	NM_002253.2	1151	Ccc/Tcc																																																																														
APC	0	MSKCC	GRCh37	5	112175546	112175547	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0022783-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	97	392	0	ENST00000257430.4:c.4255_4256del	p.Ser1419ProfsTer3	p.S1419Pfs*3	ENST00000257430	NM_000038.5	1419	AGc/c																																																																														
PHOX2B	0	MSKCC	GRCh37	4	41748308	41748308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	66	913	0	ENST00000226382.2:c.461G>A	p.Arg154His	p.R154H	ENST00000226382	NM_003924.3	154	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0022790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	264	859	2	ENST00000269305.4:c.809_810dup	p.Glu271LeufsTer75	p.E271Lfs*75	ENST00000269305	NM_001126112.2	270	-/TT																																																																														
APC	0	MSKCC	GRCh37	5	112175349	112175350	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0022790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	225	426	0	ENST00000257430.4:c.4058_4059delAA	p.Glu1353ValfsTer21	p.E1353Vfs*21	ENST00000257430	NM_000038.5	1353	gAA/g																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636723	8636723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	90	478	0	ENST00000356435.5:c.186G>C	p.Lys62Asn	p.K62N	ENST00000356435		62	aaG/aaC																																																																														
CBL	0	MSKCC	GRCh37	11	119169173	119169173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	157	598	0	ENST00000264033.4:c.2357C>T	p.Ala786Val	p.A786V	ENST00000264033	NM_005188.3	786	gCc/gTc																																																																														
MYC	0	MSKCC	GRCh37	8	128750498	128750498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	56	602	0	ENST00000377970.2:c.35C>T	p.Pro12Leu	p.P12L	ENST00000377970	NM_002467.4	12	cCt/cTt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80430637	80430637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022562-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	115	452	0	ENST00000286548.4:c.371T>C	p.Phe124Ser	p.F124S	ENST00000286548	NM_002072.3	124	tTt/tCt																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	93	628	1	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101195	27101195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	121	703	1	ENST00000324856.7:c.4477C>T	p.Gln1493Ter	p.Q1493*	ENST00000324856	NM_006015.4	1493	Cag/Tag																																																																														
ELF3	0	MSKCC	GRCh37	1	201980299	201980300	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAACTACTTCAGTGCGATGTACAGCT			P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	242	804	0	ENST00000359651.3:c.37_62dup	p.Glu22ThrfsTer30	p.E22Tfs*30	ENST00000359651		12	agc/agCAACTACTTCAGTGCGATGTACAGCTc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16052778	16052778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	102	620	1	ENST00000268712.3:c.896C>T	p.Ala299Val	p.A299V	ENST00000268712	NM_006311.3	299	gCa/gTa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591822	48591822	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	89	530	0	ENST00000342988.3:c.987del	p.Phe329LeufsTer7	p.F329Lfs*7	ENST00000342988	NM_005359.5	329	Ttt/tt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938526	44938527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	144	628	0	ENST00000377967.4:c.3075_3076dup	p.Asn1026IlefsTer23	p.N1026Ifs*23	ENST00000377967	NM_021140.2	1025	agt/agTAt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398287	+	missense_variant	Missense_Mutation	ONP	CAG	CAG	AAC			P-0022563-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	80	697	0	ENST00000256078.4:c.32_34delinsGTT	p.Ala11_Gly12delinsGlyCys	p.A11_G12delinsGC	ENST00000256078	NM_033360.2	11	gCTGgt/gGTTgt																																																																														
BTK	0	MSKCC	GRCh37	X	100611149	100611149	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	98	725	1	ENST00000308731.7:c.1457T>A	p.Leu486Gln	p.L486Q	ENST00000308731	NM_000061.2	486	cTg/cAg																																																																														
BTK	0	MSKCC	GRCh37	X	100611159	100611159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	85	713	0	ENST00000308731.7:c.1447C>A	p.Leu483Met	p.L483M	ENST00000308731	NM_000061.2	483	Ctg/Atg																																																																														
PGR	0	MSKCC	GRCh37	11	100909921	100909921	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	207	753	0	ENST00000325455.5:c.2728T>C	p.Ser910Pro	p.S910P	ENST00000325455	NM_001202474.3	910	Tct/Cct																																																																														
KMT2C	0	MSKCC	GRCh37	7	151945343	151945343	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	64	286	0	ENST00000262189.6:c.2176C>T	p.Gln726Ter	p.Q726*	ENST00000262189	NM_170606.2	726	Cag/Tag																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46509394	46509394	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	122	833	0	ENST00000262741.5:c.1337del	p.Val446AlafsTer45	p.V446Afs*45	ENST00000262741	NM_003629.3	446	gTc/gc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15965069	15965071	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0022780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	105	692	1	ENST00000268712.3:c.5525_5527del	p.Ser1842del	p.S1842del	ENST00000268712	NM_006311.3	1842	aGTAag/aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0022777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	345	600	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	144	721	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0022787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	220	1009	6	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871758	12871758	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0022787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	80	266	0	ENST00000228872.4:c.476-1G>T		p.X159_splice	ENST00000228872	NM_004064.3	159																																																																															
IL7R	0	MSKCC	GRCh37	5	35873711	35873711	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	164	695	3	ENST00000303115.3:c.667A>G	p.Ser223Gly	p.S223G	ENST00000303115	NM_002185.3	223	Agt/Ggt																																																																														
NPM1	0	MSKCC	GRCh37	5	170834762	170834762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	65	689	2	ENST00000296930.5:c.830G>A	p.Arg277Gln	p.R277Q	ENST00000296930	NM_002520.6	277	cGg/cAg																																																																														
NSD1	0	MSKCC	GRCh37	5	176637890	176637890	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	221	863	2	ENST00000439151.2:c.2490T>G	p.Ser830Arg	p.S830R	ENST00000439151	NM_022455.4	830	agT/agG																																																																														
PREX2	0	MSKCC	GRCh37	8	69069621	69069622	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0022787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	90	960	2	ENST00000288368.4:c.4296_4297delinsAT	p.Ile1433Leu	p.I1433L	ENST00000288368	NM_024870.2	1432	caGAta/caATta																																																																														
JAK2	0	MSKCC	GRCh37	9	5044416	5044416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147483622		P-0022787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	188	859	1	ENST00000381652.3:c.364C>T	p.Arg122Cys	p.R122C	ENST00000381652	NM_004972.3	122	Cgt/Tgt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412718	139412718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	29	978	1	ENST00000277541.6:c.1126T>C	p.Cys376Arg	p.C376R	ENST00000277541	NM_017617.3	376	Tgc/Cgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578504	7578540	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTG	AGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTG	-			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	310	1248	0	ENST00000269305.4:c.390_426del	p.Asn131CysfsTer27	p.N131Cfs*27	ENST00000269305	NM_001126112.2	130	ctCAACAAGATGTTTTGCCAACTGGCCAAGACCTGCCCT/ct																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368233	45368233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	248	575	0	ENST00000262160.6:c.1369G>A	p.Gly457Arg	p.G457R	ENST00000262160	NM_005901.5	457	Gga/Aga																																																																														
SMAD3	0	MSKCC	GRCh37	15	67358659	67358659	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	269	810	0	ENST00000327367.4:c.167C>G	p.Thr56Ser	p.T56S	ENST00000327367	NM_005902.3	56	aCc/aGc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021248	31021273	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGAACCAGAGCCAGAAGGAATCTG	TCCGAACCAGAGCCAGAAGGAATCTG	-			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	197	650	0	ENST00000375687.4:c.1248_1273del	p.Arg417GlnfsTer12	p.R417Qfs*12	ENST00000375687	NM_015338.5	416	cTCCGAACCAGAGCCAGAAGGAATCTG/c																																																																														
RAD21	0	MSKCC	GRCh37	8	117864336	117864787	+	splice_acceptor_variant,splice_donor_variant,intron_variant	Splice_Site	DEL	CTGCAATTGGTCATATGAAGAGAAAACATAGGTCATACAGTTTTGAACAGTATTATAGAACCATTTATTTTTTAAACTAGTACACTAAGACATACATAATGCTTTCTTTAATGAAGAAGGCCAGATAAAATTTTAGCTCCATAAAGATTTACTCAATTTTTAGCAATATACGTAAAGGGGAAAGGGGATCTTAAAAGGACAAGTCCTACCCTCAGTACAATGTAGGACAATTCTTTAGCAGACTATCTACCCTGCCAGTTCTGAACCTTAAAACTCTGGAAAGACAGGAGGCTTCATACTTAAATAAGGCAATCAGATCCAATGCATTTCCCTGCCCAAACATTTGAGTATATCTTTGATTCCTCATTTCTTTCACTCTGACAGTATAAAGGTAAATTTTAAGCCAAATACTCATGTGAACTTCATCAAGGAACTATTCCAACAGAACAAAC	CTGCAATTGGTCATATGAAGAGAAAACATAGGTCATACAGTTTTGAACAGTATTATAGAACCATTTATTTTTTAAACTAGTACACTAAGACATACATAATGCTTTCTTTAATGAAGAAGGCCAGATAAAATTTTAGCTCCATAAAGATTTACTCAATTTTTAGCAATATACGTAAAGGGGAAAGGGGATCTTAAAAGGACAAGTCCTACCCTCAGTACAATGTAGGACAATTCTTTAGCAGACTATCTACCCTGCCAGTTCTGAACCTTAAAACTCTGGAAAGACAGGAGGCTTCATACTTAAATAAGGCAATCAGATCCAATGCATTTCCCTGCCCAAACATTTGAGTATATCTTTGATTCCTCATTTCTTTCACTCTGACAGTATAAAGGTAAATTTTAAGCCAAATACTCATGTGAACTTCATCAAGGAACTATTCCAACAGAACAAAC	-			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	236	434	0	ENST00000297338.2:c.1321+1_1322-1del		p.X441_splice	ENST00000297338	NM_006265.2	441																																																																															
RAD21	0	MSKCC	GRCh37	8	117864802	117864802	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	292	504	0	ENST00000297338.2:c.1307A>T	p.Gln436Leu	p.Q436L	ENST00000297338	NM_006265.2	436	cAg/cTg																																																																														
RAD21	0	MSKCC	GRCh37	8	117869711	117870588	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTAAACAAATTTTAATTTGTCATTAGTTTAGAAAGATTAGAAATAGCACTGTGATAAAAGAAAACTGCTAATGATTTATTCTAATTATGTCACATTTGCTTACTGAAGTCTTACTTCAAATGTTAAAATATCTAGTTTAAACTTTAATTCTTTAGCATCTGAATTTTTTAAAATGACTCAATTACACACAGTTACAACACTGGGGCATGACTAGCAAATTCAAACTTAGATCTAGATTTAAATGATCCTAAAATATGTTTGATAAACTCTAAATATGTATGTATGTTAAGTTACATTAACAGTCACAGCTGAAACTTTCCCGTTATAATGTGTTTCATCAAGAAAAGAATCTGGTTCTGGGCACAGTGGCATGTGCCTGTAGTCCCAGCTACTTGAGGCTGAAGTGGGAGGATCACTTGAATCCAAGAGTTCGAGGCTGTAGTGTGCTATAATCCAGCCTGTGAAGAGCCACGGCACTCCAGCATGGATAACACAGCAGAGACCCCGCCTCTTAAAAAACAATATGCCTTGCTAACTAGTTTTGAATACCTGTTTTTGAATAGCAAGTATAACAGGGAAACTAACTGTTCCAAAATGGTTGGTTTAAACGTGATCACCACTTCAATGTTGGGACTCCTCGCAGAAATCAATATATAGGTTCTATGATTGCATATAGGGAGAGAAGTAGGTAAACAATTAGCTCCAAGTATGAAAATAATGCTTAATCTACTGGTAGAAAGCCAAATTCTTTTCTTGATGAAAATGCATTACATGAAATTTTAAGTCTTTCTGTCTATAGTCTGGTTTTCTTTTGAAATTGCTATTAGCAACACAATATAACATTATAATTAATGGCTAATAATTTGTTTCTCTTTT	ACCTAAACAAATTTTAATTTGTCATTAGTTTAGAAAGATTAGAAATAGCACTGTGATAAAAGAAAACTGCTAATGATTTATTCTAATTATGTCACATTTGCTTACTGAAGTCTTACTTCAAATGTTAAAATATCTAGTTTAAACTTTAATTCTTTAGCATCTGAATTTTTTAAAATGACTCAATTACACACAGTTACAACACTGGGGCATGACTAGCAAATTCAAACTTAGATCTAGATTTAAATGATCCTAAAATATGTTTGATAAACTCTAAATATGTATGTATGTTAAGTTACATTAACAGTCACAGCTGAAACTTTCCCGTTATAATGTGTTTCATCAAGAAAAGAATCTGGTTCTGGGCACAGTGGCATGTGCCTGTAGTCCCAGCTACTTGAGGCTGAAGTGGGAGGATCACTTGAATCCAAGAGTTCGAGGCTGTAGTGTGCTATAATCCAGCCTGTGAAGAGCCACGGCACTCCAGCATGGATAACACAGCAGAGACCCCGCCTCTTAAAAAACAATATGCCTTGCTAACTAGTTTTGAATACCTGTTTTTGAATAGCAAGTATAACAGGGAAACTAACTGTTCCAAAATGGTTGGTTTAAACGTGATCACCACTTCAATGTTGGGACTCCTCGCAGAAATCAATATATAGGTTCTATGATTGCATATAGGGAGAGAAGTAGGTAAACAATTAGCTCCAAGTATGAAAATAATGCTTAATCTACTGGTAGAAAGCCAAATTCTTTTCTTGATGAAAATGCATTACATGAAATTTTAAGTCTTTCTGTCTATAGTCTGGTTTTCTTTTGAAATTGCTATTAGCAACACAATATAACATTATAATTAATGGCTAATAATTTGTTTCTCTTTT	-			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	224	405	0	ENST00000297338.2:c.481+3_483del		p.X161_splice	ENST00000297338	NM_006265.2	161																																																																															
RAD21	0	MSKCC	GRCh37	8	117874178	117875200	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCTAGAAAAGAAATGCTAAGCTTAAATATCTAGCTACCCATAAATTATCTAGGGATCAGAGGGAGATAAGTAGGTATAACTTCCTAAGTTTATATTCTCATAGAAAGGTTGATAACATATGCAAAATACCTTGAAGCACAAGTACTTCTCTTTTTCCATGCTCATAAATTGTATTCCTTGCTTTAGGAAAAAGTCAAAGCACTAATTATGCATTAAGCTCATAAATGTTTAAACGGACATATCAACAAATAACTAGTAATAGTTTCCTAATTAAACATGATATTTATGAGGGGGAAAAAGAATAACTGCAGAAGAGTACCTTAAATGTTAAAAGGAGCTGGTTATTTTGGAGAAAGAATTACACAATTTTAATTTTCTTTATCTTTTTCCTATATTTTTCAAGTTGTCTATAATAAATATGCCTTACTTTGAAAGACAAAAAAAAGCATGTTATTTAGATAAAATGTGCTTATTGGTCACATGTTAATTTAAGTATTGTAGTCTTTTTCTAAATATTTTACTTTTAAATAAAATCTTAGATCTCAGACATTTTACTGTTCACATACTGACATAAACTGAAGTACTAGAATGTATCCTCAGTAGAAACTGTTTAAGGCATTTCTTAATAAAATACACATTATTTTAATTAGAATAAAAATTTCATCAATGCTTTTAAAAATTATAGAAAGATATGTGAATTTAAATATTAATTATCTTCTTAGATGGTGGTGTGGTTGGCAGACTCCAGTTTTATAACCAATCATTACCTAAAACAAAATAACAAAAAACTACGAAGAATATTTACTTAGGAAAAAAAGTTTAAAATCCTAAAATTGTCTTTTCTGAGCTATATTTTAAAAAATCATCACATAACAATTAGTTTCCAACATTTTAACCTCTTGATGACTCAAGTCTATGTAAGCTGCTGAAAAAAGTATTAAAAAGGCAGCTCCAAAGGAAGAACAAATGGGGGTGAGCTCCATTACTTCACAGGGAGAACAGACGCAAGTAGGTTTCCTCCC	ACCTAGAAAAGAAATGCTAAGCTTAAATATCTAGCTACCCATAAATTATCTAGGGATCAGAGGGAGATAAGTAGGTATAACTTCCTAAGTTTATATTCTCATAGAAAGGTTGATAACATATGCAAAATACCTTGAAGCACAAGTACTTCTCTTTTTCCATGCTCATAAATTGTATTCCTTGCTTTAGGAAAAAGTCAAAGCACTAATTATGCATTAAGCTCATAAATGTTTAAACGGACATATCAACAAATAACTAGTAATAGTTTCCTAATTAAACATGATATTTATGAGGGGGAAAAAGAATAACTGCAGAAGAGTACCTTAAATGTTAAAAGGAGCTGGTTATTTTGGAGAAAGAATTACACAATTTTAATTTTCTTTATCTTTTTCCTATATTTTTCAAGTTGTCTATAATAAATATGCCTTACTTTGAAAGACAAAAAAAAGCATGTTATTTAGATAAAATGTGCTTATTGGTCACATGTTAATTTAAGTATTGTAGTCTTTTTCTAAATATTTTACTTTTAAATAAAATCTTAGATCTCAGACATTTTACTGTTCACATACTGACATAAACTGAAGTACTAGAATGTATCCTCAGTAGAAACTGTTTAAGGCATTTCTTAATAAAATACACATTATTTTAATTAGAATAAAAATTTCATCAATGCTTTTAAAAATTATAGAAAGATATGTGAATTTAAATATTAATTATCTTCTTAGATGGTGGTGTGGTTGGCAGACTCCAGTTTTATAACCAATCATTACCTAAAACAAAATAACAAAAAACTACGAAGAATATTTACTTAGGAAAAAAAGTTTAAAATCCTAAAATTGTCTTTTCTGAGCTATATTTTAAAAAATCATCACATAACAATTAGTTTCCAACATTTTAACCTCTTGATGACTCAAGTCTATGTAAGCTGCTGAAAAAAGTATTAAAAAGGCAGCTCCAAAGGAAGAACAAATGGGGGTGAGCTCCATTACTTCACAGGGAGAACAGACGCAAGTAGGTTTCCTCCC	-			P-0022611-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	125	443	0	ENST00000297338.2:c.274+170_277del		p.X92_splice	ENST00000297338	NM_006265.2	92																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	156	914	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0022786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	103	961	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
MYCL1	0	MSKCC	GRCh37	1	40366802	40366802	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	66	643	0	ENST00000397332.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000397332	NM_001033082.2	132	cGg/cTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971011	21971012	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0022786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	66	665	0	ENST00000304494.5:c.344_346dup	p.Val115dup	p.V115dup	ENST00000304494	NM_000077.4	115	gac/gTGGac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971011	21971012	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0022786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	66	665	0	ENST00000304494.5:c.344_346dup	p.Val115dup	p.V115dup	ENST00000304494	NM_000077.4	115	gac/gTGGac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971011	21971012	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0022786-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	66	665	0	ENST00000304494.5:c.344_346dup	p.Val115dup	p.V115dup	ENST00000304494	NM_000077.4	115	gac/gTGGac																																																																														
APC	0	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	118	377	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	66	529	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577563	7577565	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	224	756	1	ENST00000269305.4:c.716_718del	p.Asn239del	p.N239del	ENST00000269305	NM_001126112.2	239	aACAgt/agt																																																																														
PREX2	0	MSKCC	GRCh37	8	68965476	68965476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1381	118	733	2	ENST00000288368.4:c.1088G>A	p.Arg363Gln	p.R363Q	ENST00000288368	NM_024870.2	363	cGg/cAg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118379891	118379891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	53	390	1	ENST00000534358.1:c.10876C>T	p.Pro3626Ser	p.P3626S	ENST00000534358	NM_005933.3	3626	Cca/Tca																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18656235	18656235	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	93	565	0	ENST00000266497.5:c.2914G>C	p.Asp972His	p.D972H	ENST00000266497		972	Gat/Cat																																																																														
PTPRT	0	MSKCC	GRCh37	20	41419965	41419965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	444	645	0	ENST00000373198.4:c.356C>G	p.Ala119Gly	p.A119G	ENST00000373198	NM_133170.3	119	gCc/gGc																																																																														
NKX3-1	0	MSKCC	GRCh37	8	23539034	23539034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	97	614	1	ENST00000380871.4:c.405G>T	p.Gln135His	p.Q135H	ENST00000380871	NM_006167.3	135	caG/caT																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870974	12870975	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	37	441	0	ENST00000228872.4:c.204dup	p.Pro69ThrfsTer56	p.P69Tfs*56	ENST00000228872	NM_004064.3	67	-/A																																																																														
CDH1	0	MSKCC	GRCh37	16	68772208	68772226	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGCTCTGCCAGGAGCCG	TTGGCTCTGCCAGGAGCCG	CAGAGCCAA			P-0022603-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	75	1017	0	ENST00000261769.5:c.57_75delinsCAGAGCCAA	p.Trp20ArgfsTer33	p.W20Rfs*33	ENST00000261769	NM_004360.3	19	tcTTGGCTCTGCCAGGAGCCG/tcCAGAGCCAA																																																																														
RBM10	0	MSKCC	GRCh37	X	47041720	47041720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	74	656	0	ENST00000329236.7:c.1711C>T	p.Gln571Ter	p.Q571*	ENST00000329236	NM_001204466.1	571	Caa/Taa																																																																														
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	452	699	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																																																														
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	375	602	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89717695	89717696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	59	623	0	ENST00000371953.3:c.723dupT	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	240	-/T																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2494677	2494677	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	76	943	0	ENST00000355716.4:c.817A>G	p.Ile273Val	p.I273V	ENST00000355716	NM_003820.2	273	Ata/Gta																																																																														
PMAIP1	0	MSKCC	GRCh37	18	57569913	57569914	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	49	371	0	ENST00000316660.6:c.95_96dup	p.Gly33LeufsTer5	p.G33Lfs*5	ENST00000316660	NM_021127.2	31	-/TT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212483999	212483999	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	76	471	0	ENST00000342788.4:c.2204G>T	p.Gly735Val	p.G735V	ENST00000342788	NM_005235.2	735	gGt/gTt																																																																														
MED12	0	MSKCC	GRCh37	X	70357096	70357096	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022604-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	112	995	0	ENST00000374080.3:c.5611C>T	p.Arg1871Ter	p.R1871*	ENST00000374080		1871	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	299	788	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	337	724	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0022506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	109	281	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	347	560	1	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
AKT3	0	MSKCC	GRCh37	1	243736254	243736254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	136	544	0	ENST00000263826.5:c.793G>A	p.Gly265Arg	p.G265R	ENST00000263826	NM_005465.4	265	Gga/Aga																																																																														
ERG	0	MSKCC	GRCh37	21	39774503	39774503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	268	768	0	ENST00000288319.7:c.649C>T	p.Arg217Trp	p.R217W	ENST00000288319	NM_182918.3	217	Cgg/Tgg																																																																														
FAT1	0	MSKCC	GRCh37	4	187535414	187535414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	24	707	0	ENST00000441802.2:c.9160T>C	p.Ser3054Pro	p.S3054P	ENST00000441802	NM_005245.3	3054	Tct/Cct																																																																														
MEN1	0	MSKCC	GRCh37	11	64572289	64572289	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	710	651	1	ENST00000337652.1:c.1366-1G>A		p.X456_splice	ENST00000337652	NM_130803.2	456																																																																															
JAK3	0	MSKCC	GRCh37	19	17945515	17945515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	330	325	0	ENST00000458235.1:c.2215G>A	p.Glu739Lys	p.E739K	ENST00000458235	NM_000215.3	739	Gag/Aag																																																																														
DAXX	0	MSKCC	GRCh37	6	33287842	33287843	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AT			P-0010652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	697	767	2	ENST00000374542.5:c.1410_1411delinsAT	p.Met470_Gln471delinsIleTer	p.M470_Q471delinsI*	ENST00000374542	NM_001141970.1	470	atGCag/atATag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696399	47696399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	89	689	0	ENST00000347630.2:c.424C>A	p.Leu142Ile	p.L142I	ENST00000347630	NM_001007230.1	142	Ctt/Att																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593607	+	protein_altering_variant	In_Frame_Del	DEL	AGTGGAA	AGTGGAA	G			P-0022613-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	158	551	0	ENST00000288135.5:c.1667_1673delAGTGGAAinsG	p.Gln556_Lys558delinsArg	p.Q556_K558delinsR	ENST00000288135	NM_000222.2	556	cAGTGGAAg/cGg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0022607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	78	619	1				ENST00000310581	NM_198253.2																																																																																
RBM10	0	MSKCC	GRCh37	X	47028820	47028823	+	frameshift_variant	Frame_Shift_Del	DEL	CGTT	CGTT	-			P-0022607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	112	879	0	ENST00000329236.7:c.125_128del	p.Arg42HisfsTer42	p.R42Hfs*42	ENST00000329236	NM_001204466.1	42	CGTTca/ca																																																																														
GATA3	0	MSKCC	GRCh37	10	8111407	8111435	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTCACCCTCTCCTCTCTCCCCACTCTCAG	TTCACCCTCTCCTCTCTCCCCACTCTCAG	-			P-0022607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			35	26	348	0	ENST00000346208.3:c.922-28_922del		p.X308_splice	ENST00000346208		308																																																																															
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	447	1000	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121435370	121435370	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	163	1151	1	ENST00000257555.6:c.1403T>A	p.Leu468Gln	p.L468Q	ENST00000257555		468	cTg/cAg																																																																														
AURKB	0	MSKCC	GRCh37	17	8111058	8111058	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	91	998	0	ENST00000585124.1:c.149C>T	p.Thr50Ile	p.T50I	ENST00000585124	NM_004217.3	50	aCa/aTa																																																																														
SMAD2	0	MSKCC	GRCh37	18	45377672	45377672	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	69	409	0	ENST00000262160.6:c.757A>T	p.Thr253Ser	p.T253S	ENST00000262160	NM_005901.5	253	Act/Tct																																																																														
ATRX	0	MSKCC	GRCh37	X	76855951	76855951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	92	911	1	ENST00000373344.5:c.5649G>A	p.Trp1883Ter	p.W1883*	ENST00000373344	NM_000489.3	1883	tgG/tgA																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	310	814	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974765	21974765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	140	373	0	ENST00000304494.5:c.62C>A	p.Ala21Asp	p.A21D	ENST00000304494	NM_000077.4	21	gCc/gAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974765	21974765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	140	373	0	ENST00000304494.5:c.62C>A	p.Ala21Asp	p.A21D	ENST00000304494	NM_000077.4	21	gCc/gAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	345	896	0	ENST00000269305.4:c.584T>G	p.Ile195Ser	p.I195S	ENST00000269305	NM_001126112.2	195	aTc/aGc																																																																														
EZH2	0	MSKCC	GRCh37	7	148524346	148524346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022606-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	152	544	0	ENST00000320356.2:c.638G>T	p.Arg213Leu	p.R213L	ENST00000320356	NM_004456.4	213	cGc/cTc																																																																														
MYCN	0	MSKCC	GRCh37	2	16086032	16086032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	239	660	2	ENST00000281043.3:c.1208C>T	p.Thr403Met	p.T403M	ENST00000281043	NM_005378.4	403	aCg/aTg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43708542	43708542	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	259	860	2	ENST00000382044.4:c.4754G>A	p.Trp1585Ter	p.W1585*	ENST00000382044	NM_001141980.1	1585	tGg/tAg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348413	89348413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	255	854	1	ENST00000301030.4:c.4537G>A	p.Val1513Met	p.V1513M	ENST00000301030	NM_001256183.1	1513	Gtg/Atg																																																																														
KIT	3815	MSKCC	GRCh37	4	55602664	55602664	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C	rs1057519713		P-0022487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	174	304	1	ENST00000288135.5:c.2485G>C	p.Ala829Pro	p.A829P	ENST00000288135	NM_000222.2	829	Gct/Cct																																																																														
KIT	0	MSKCC	GRCh37	4	55593590	55593607	+	inframe_deletion	In_Frame_Del	DEL	GTATGAAGTACAGTGGAA	GTATGAAGTACAGTGGAA	-			P-0022487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	149	387	0	ENST00000288135.5:c.1657_1674del	p.Tyr553_Lys558del	p.Y553_K558del	ENST00000288135	NM_000222.2	552	atGTATGAAGTACAGTGGAAg/atg																																																																														
MGA	0	MSKCC	GRCh37	15	42005499	42005521	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTGTACTTGTTTGAAAAGAAA	GGTTGTACTTGTTTGAAAAGAAA	-			P-0022487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	218	692	0	ENST00000219905.7:c.3235_3257del	p.Gly1079SerfsTer5	p.G1079Sfs*5	ENST00000219905	NM_001164273.1	1079	GGTTGTACTTGTTTGAAAAGAAAa/a																																																																														
CARM1	0	MSKCC	GRCh37	19	10982461	10982461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	13	147	1	ENST00000327064.4:c.83C>T	p.Thr28Ile	p.T28I	ENST00000327064	NM_199141.1	28	aCc/aTc																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185161376	185161376	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	41	597	0	ENST00000265026.3:c.803A>C	p.Asn268Thr	p.N268T	ENST00000265026	NM_004721.4	268	aAt/aCt																																																																														
MDC1	0	MSKCC	GRCh37	6	30672432	30672432	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	89	632	0	ENST00000376406.3:c.4528C>G	p.Pro1510Ala	p.P1510A	ENST00000376406	NM_014641.2	1510	Ccc/Gcc																																																																														
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	118	744	2	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
MDC1	0	MSKCC	GRCh37	6	30675664	30675664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	295	1081	0	ENST00000376406.3:c.2692G>A	p.Glu898Lys	p.E898K	ENST00000376406	NM_014641.2	898	Gag/Aag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37884145	37884145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	85	953	1	ENST00000269571.5:c.3616C>G	p.Gln1206Glu	p.Q1206E	ENST00000269571		1206	Cag/Gag																																																																														
TBX3	0	MSKCC	GRCh37	12	115109720	115109720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	120	1073	0	ENST00000257566.3:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000257566	NM_016569.3	720	Gaa/Aaa																																																																														
DICER1	0	MSKCC	GRCh37	14	95579470	95579470	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	48	566	0	ENST00000343455.3:c.1999C>G	p.Leu667Val	p.L667V	ENST00000343455	NM_177438.2	667	Ctt/Gtt																																																																														
MGA	0	MSKCC	GRCh37	15	42028418	42028418	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	21	433	0	ENST00000219905.7:c.3956C>G	p.Ser1319Cys	p.S1319C	ENST00000219905	NM_001164273.1	1319	tCt/tGt																																																																														
NF1	0	MSKCC	GRCh37	17	29552239	29552239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	30	655	0	ENST00000358273.4:c.1972C>G	p.Leu658Val	p.L658V	ENST00000358273	NM_001042492.2	658	Ctc/Gtc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2216988	2216988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	175	1033	1	ENST00000398665.3:c.2443C>T	p.Gln815Ter	p.Q815*	ENST00000398665	NM_032482.2	815	Cag/Tag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10597328	10597329	+	frameshift_variant,stop_lost	Frame_Shift_Ins	INS	-	-	C			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	120	926	0	ENST00000171111.5:c.1874dup	p.Ter625TrpfsTer26	p.*625Wfs*26	ENST00000171111	NM_203500.1	625	tga/tgGa																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11141551	11141551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	107	820	0	ENST00000344626.4:c.3528C>A	p.Ser1176Arg	p.S1176R	ENST00000344626	NM_003072.3	1176	agC/agA																																																																														
ASXL2	0	MSKCC	GRCh37	2	25978922	25978922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	58	552	1	ENST00000435504.4:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000435504		334	tCa/tTa																																																																														
MSH6	0	MSKCC	GRCh37	2	48027263	48027263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	33	511	0	ENST00000234420.5:c.2141C>G	p.Ser714Cys	p.S714C	ENST00000234420	NM_000179.2	714	tCt/tGt																																																																														
WHSC1	0	MSKCC	GRCh37	4	1941447	1941447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	39	795	0	ENST00000382891.5:c.1823C>G	p.Ser608Cys	p.S608C	ENST00000382891	NM_133335.3	608	tCt/tGt																																																																														
PREX2	0	MSKCC	GRCh37	8	68965375	68965375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	43	810	0	ENST00000288368.4:c.987G>C	p.Lys329Asn	p.K329N	ENST00000288368	NM_024870.2	329	aaG/aaC																																																																														
ATRX	0	MSKCC	GRCh37	X	76938505	76938505	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	26	579	0	ENST00000373344.5:c.2243C>G	p.Ser748Cys	p.S748C	ENST00000373344	NM_000489.3	748	tCt/tGt																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0022489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	193	412	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag																																																																														
MAX	0	MSKCC	GRCh37	14	65544682	65544682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	421	875	1	ENST00000358664.4:c.244C>T	p.Gln82Ter	p.Q82*	ENST00000358664	NM_002382.4	82	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	143	857	5	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
RAC1	0	MSKCC	GRCh37	7	6431634	6431634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	45	497	0	ENST00000356142.4:c.187G>C	p.Asp63His	p.D63H	ENST00000356142	NM_018890.3	63	Gat/Cat																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	120	600	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	120	600	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	120	600	0	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	14	55	2	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg																																																																														
FLT1	0	MSKCC	GRCh37	13	29001999	29001999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	19	537	0	ENST00000282397.4:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000282397	NM_002019.4	389	tCg/tTg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44833924	44833924	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	123	271	0	ENST00000377967.4:c.348C>G	p.Tyr116Ter	p.Y116*	ENST00000377967	NM_021140.2	116	taC/taG																																																																														
ELF3	0	MSKCC	GRCh37	1	201982403	201982404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	246	815	0	ENST00000359651.3:c.783dupC	p.Glu262ArgfsTer39	p.E262Rfs*39	ENST00000359651		261	ctc/ctCc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786740	3786740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	41	705	0	ENST00000262367.5:c.4471C>G	p.Gln1491Glu	p.Q1491E	ENST00000262367	NM_004380.2	1491	Caa/Gaa																																																																														
NUF2	0	MSKCC	GRCh37	1	163315571	163315571	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	22	384	0	ENST00000271452.3:c.911C>G	p.Ser304Ter	p.S304*	ENST00000271452	NM_145697.2	304	tCa/tGa																																																																														
RET	0	MSKCC	GRCh37	10	43598002	43598002	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	33	765	0	ENST00000355710.3:c.550A>T	p.Thr184Ser	p.T184S	ENST00000355710	NM_020975.4	184	Acc/Tcc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56494891	56494891	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	140	590	0	ENST00000267101.3:c.3248C>G	p.Ser1083Cys	p.S1083C	ENST00000267101	NM_001982.3	1083	tCt/tGt																																																																														
MGA	0	MSKCC	GRCh37	15	41991137	41991137	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	17	612	1	ENST00000219905.7:c.2090C>A	p.Ser697Ter	p.S697*	ENST00000219905	NM_001164273.1	697	tCa/tAa																																																																														
ASXL1	0	MSKCC	GRCh37	20	30946599	30946599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	169	467	0	ENST00000375687.4:c.21G>T	p.Lys7Asn	p.K7N	ENST00000375687	NM_015338.5	7	aaG/aaT																																																																														
RUNX1	0	MSKCC	GRCh37	21	36164515	36164515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	38	604	0	ENST00000300305.3:c.1360G>A	p.Glu454Lys	p.E454K	ENST00000300305		454	Gag/Aag																																																																														
AGO2	0	MSKCC	GRCh37	8	141566071	141566071	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	93	721	0	ENST00000220592.5:c.1193G>C	p.Gly398Ala	p.G398A	ENST00000220592	NM_012154.3	398	gGa/gCa																																																																														
STAG2	0	MSKCC	GRCh37	X	123195112	123195112	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	60	253	0	ENST00000218089.9:c.1455G>A	p.Trp485Ter	p.W485*	ENST00000218089	NM_001042749.1	485	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7578471	7578480	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGGGGGT	GGGCGGGGGT	-			P-0022579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	149	372	0	ENST00000269305.4:c.450_459del	p.Pro151AlafsTer16	p.P151Afs*16	ENST00000269305	NM_001126112.2	150	acACCCCCGCCC/ac																																																																														
EGFR	0	MSKCC	GRCh37	7	55259515	55259517	+	missense_variant	Missense_Mutation	ONP	TGG	TGG	GCT			P-0022579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	231	362	0	ENST00000275493.2:c.2573_2575delinsGCT	p.Leu858_Ala859delinsArgSer	p.L858_A859delinsRS	ENST00000275493	NM_005228.3	858	cTGGcc/cGCTcc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	94	524	0	ENST00000371953.3:c.494G>A	p.Gly165Glu	p.G165E	ENST00000371953	NM_000314.4	165	gGa/gAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	35	598	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0022476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	17	278	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																																																														
NF1	0	MSKCC	GRCh37	17	29490284	29490309	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTCGTGAAGGAAACCAGCATGCAG	CTGTCGTGAAGGAAACCAGCATGCAG	-			P-0022431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	478	607	0	ENST00000358273.4:c.372_397del	p.Cys124Ter	p.C124*	ENST00000358273	NM_001042492.2	123	acCTGTCGTGAAGGAAACCAGCATGCAGct/acct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	133	614	1				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	278	814	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	326	708	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710622	114710622	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	108	530	0	ENST00000543371.1:c.107C>A	p.Ser36Ter	p.S36*	ENST00000543371	NM_001198531.1	36	tCg/tAg																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51436047	51436047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	168	345	0	ENST00000262662.1:c.7G>A	p.Glu3Lys	p.E3K	ENST00000262662		3	Gag/Aag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426814	49426814	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	113	431	0	ENST00000301067.7:c.11674C>T	p.Gln3892Ter	p.Q3892*	ENST00000301067	NM_003482.3	3892	Cag/Tag																																																																														
AXIN1	0	MSKCC	GRCh37	16	341206	341206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	255	931	0	ENST00000262320.3:c.2278G>A	p.Glu760Lys	p.E760K	ENST00000262320	NM_003502.3	760	Gag/Aag																																																																														
AXIN1	0	MSKCC	GRCh37	16	343517	343517	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	260	952	0	ENST00000262320.3:c.2157G>C	p.Lys719Asn	p.K719N	ENST00000262320	NM_003502.3	719	aaG/aaC																																																																														
PALB2	0	MSKCC	GRCh37	16	23635337	23635337	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	194	662	0	ENST00000261584.4:c.2827G>C	p.Glu943Gln	p.E943Q	ENST00000261584	NM_024675.3	943	Gag/Cag																																																																														
FANCA	0	MSKCC	GRCh37	16	89842194	89842194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	130	726	0	ENST00000389301.3:c.1856C>G	p.Ser619Cys	p.S619C	ENST00000389301	NM_000135.2	619	tCc/tGc																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627804	14627804	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	157	725	0	ENST00000254322.2:c.266C>G	p.Ser89Cys	p.S89C	ENST00000254322	NM_006145.1	89	tCt/tGt																																																																														
KDR	0	MSKCC	GRCh37	4	55964935	55964935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	41	463	0	ENST00000263923.4:c.2302C>G	p.Leu768Val	p.L768V	ENST00000263923	NM_002253.2	768	Cta/Gta																																																																														
INPP4B	0	MSKCC	GRCh37	4	143191840	143191840	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	122	567	0	ENST00000262992.4:c.591C>G	p.Ile197Met	p.I197M	ENST00000262992	NM_001101669.1	197	atC/atG																																																																														
MDC1	0	MSKCC	GRCh37	6	30673499	30673499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	291	705	0	ENST00000376406.3:c.3461C>T	p.Ser1154Phe	p.S1154F	ENST00000376406	NM_014641.2	1154	tCt/tTt																																																																														
TAP2	0	MSKCC	GRCh37	6	32802933	32802933	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	203	372	0	ENST00000374899.4:c.943C>G	p.Gln315Glu	p.Q315E	ENST00000374899	NM_018833.2	315	Cag/Gag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44938390	44938390	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0022479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	61	396	0	ENST00000377967.4:c.2939-1G>A		p.X980_splice	ENST00000377967	NM_021140.2	980																																																																															
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0022491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	184	501	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553588	106553588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	44	336	1	ENST00000369096.4:c.1553C>T	p.Thr518Met	p.T518M	ENST00000369096	NM_001198.3	518	aCg/aTg																																																																														
BABAM1	0	MSKCC	GRCh37	19	17379883	17379883	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1229	117	970	0	ENST00000359435.4:c.268A>C	p.Asn90His	p.N90H	ENST00000359435	NM_001033549.1	90	Aac/Cac																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	78	797	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	37	771	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	28	559	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																																																														
MED12	0	MSKCC	GRCh37	X	70354226	70354226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	97	820	4	ENST00000374080.3:c.4637C>T	p.Thr1546Met	p.T1546M	ENST00000374080		1546	aCg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112155043	112155043	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	62	482	0	ENST00000257430.4:c.1312+2T>C		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																															
ARID1A	0	MSKCC	GRCh37	1	27107004	27107005	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	46	671	0	ENST00000324856.7:c.6619_6620del	p.Gln2207ValfsTer17	p.Q2207Vfs*17	ENST00000324856	NM_006015.4	2205	gcCAca/gcca																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920405	114920405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	64	707	1	ENST00000543371.1:c.1346C>T	p.Ala449Val	p.A449V	ENST00000543371	NM_001198531.1	449	gCa/gTa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3832683	3832683	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0022438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	38	470	0	ENST00000262367.5:c.1573+2T>C		p.X525_splice	ENST00000262367	NM_004380.2	525																																																																															
TCF3	0	MSKCC	GRCh37	19	1625652	1625652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	282	1035	0	ENST00000344749.5:c.422C>T	p.Ser141Leu	p.S141L	ENST00000344749	NM_001136139.2	141	tCg/tTg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210417	2210417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	420	894	3	ENST00000398665.3:c.1024C>T	p.Arg342Trp	p.R342W	ENST00000398665	NM_032482.2	342	Cgg/Tgg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061244	38061244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	332	948	1	ENST00000250448.2:c.745G>A	p.Asp249Asn	p.D249N	ENST00000250448	NM_004496.3	249	Gac/Aac																																																																														
ERCC4	0	MSKCC	GRCh37	16	14041623	14041623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	148	679	1	ENST00000311895.7:c.2170G>A	p.Val724Met	p.V724M	ENST00000311895	NM_005236.2	724	Gtg/Atg																																																																														
ERF	0	MSKCC	GRCh37	19	42753330	42753330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	287	1218	1	ENST00000222329.4:c.934C>T	p.Arg312Trp	p.R312W	ENST00000222329	NM_006494.2	312	Cgg/Tgg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198267696	198267696	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	174	717	0	ENST00000335508.6:c.1783G>C	p.Glu595Gln	p.E595Q	ENST00000335508	NM_012433.2	595	Gag/Cag																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55131197	55131197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	58	635	0	ENST00000257290.5:c.740G>T	p.Trp247Leu	p.W247L	ENST00000257290	NM_006206.4	247	tGg/tTg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50459476	50459476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	116	465	0	ENST00000331340.3:c.765G>C	p.Lys255Asn	p.K255N	ENST00000331340	NM_006060.4	255	aaG/aaC																																																																														
TEK	0	MSKCC	GRCh37	9	27185627	27185627	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0022436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	78	783	0	ENST00000380036.4:c.1327G>C	p.Val443Leu	p.V443L	ENST00000380036	NM_000459.3	443	Gtt/Ctt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101048	27101048	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	74	954	1	ENST00000324856.7:c.4330G>T	p.Glu1444Ter	p.E1444*	ENST00000324856	NM_006015.4	1444	Gag/Tag																																																																														
CD79B	0	MSKCC	GRCh37	17	62006644	62006644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	62	852	0	ENST00000392795.3:c.635T>C	p.Val212Ala	p.V212A	ENST00000392795	NM_001039933.1	212	gTg/gCg																																																																														
RAF1	0	MSKCC	GRCh37	3	12645695	12645699	+	protein_altering_variant	In_Frame_Del	DEL	TGTCG	TGTCG	GA			P-0022527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	61	337	0	ENST00000251849.4:c.770_774delinsTC	p.Ser257_Thr258delinsPhe	p.S257_T258delinsF	ENST00000251849	NM_002880.3	257	tCGACA/tTC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	15	721	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732976	30732976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	23	456	0	ENST00000359013.4:c.1664C>T	p.Thr555Ile	p.T555I	ENST00000359013	NM_001024847.2	555	aCa/aTa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591246	67591246	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	52	527	1	ENST00000274335.5:c.1746-2A>T		p.X582_splice	ENST00000274335		582																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	161	385	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0022441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	64	479	1	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																																																														
ELF3	0	MSKCC	GRCh37	1	201984447	201984457	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	ACTGAGGGTTG	ACTGAGGGTTG	-			P-0022441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	557	46	0	ENST00000359651.3:c.1112_*6del		p.*371*	ENST00000359651		371																																																																															
DIS3	0	MSKCC	GRCh37	13	73349363	73349363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	71	506	0	ENST00000377767.4:c.973G>C	p.Glu325Gln	p.E325Q	ENST00000377767	NM_014953.3	325	Gag/Cag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821746	72821746	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145105101		P-0022441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	62	536	0	ENST00000268489.5:c.10429G>A	p.Glu3477Lys	p.E3477K	ENST00000268489	NM_006885.3	3477	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577575	7577595	+	inframe_deletion	In_Frame_Del	DEL	AGTTGTAGTGGATGGTGGTAC	AGTTGTAGTGGATGGTGGTAC	-			P-0022441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	96	731	0	ENST00000269305.4:c.686_706del	p.Cys229_Asn235del	p.C229_N235del	ENST00000269305	NM_001126112.2	229	tGTACCACCATCCACTACAACTac/tac																																																																														
NCOR1	0	MSKCC	GRCh37	17	16062085	16062085	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	46	485	0	ENST00000268712.3:c.721G>C	p.Asp241His	p.D241H	ENST00000268712	NM_006311.3	241	Gat/Cat																																																																														
MSH2	0	MSKCC	GRCh37	2	47656948	47656948	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	40	446	0	ENST00000233146.2:c.1144C>G	p.Arg382Gly	p.R382G	ENST00000233146	NM_000251.2	382	Cgt/Ggt																																																																														
FAT1	0	MSKCC	GRCh37	4	187557888	187557892	+	frameshift_variant	Frame_Shift_Del	DEL	TGACG	TGACG	-			P-0022441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	65	672	0	ENST00000441802.2:c.3819_3823del	p.Val1274SerfsTer6	p.V1274Sfs*6	ENST00000441802	NM_005245.3	1273	caCGTCAta/cata																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589166	67589166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	47	364	0	ENST00000274335.5:c.1154A>G	p.His385Arg	p.H385R	ENST00000274335		385	cAt/cGt																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323232	31323232	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	71	552	0	ENST00000412585.2:c.757G>T	p.Glu253Ter	p.E253*	ENST00000412585	NM_005514.6	253	Gag/Tag																																																																														
ROS1	0	MSKCC	GRCh37	6	117686868	117686868	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	42	470	0	ENST00000368508.3:c.2849C>G	p.Ser950Cys	p.S950C	ENST00000368508	NM_002944.2	950	tCt/tGt																																																																														
JAK2	0	MSKCC	GRCh37	9	5069076	5069076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	48	430	0	ENST00000381652.3:c.1381G>T	p.Glu461Ter	p.E461*	ENST00000381652	NM_004972.3	461	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008422-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			175	400	641	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2216631	2216631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008422-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			674	140	564	1	ENST00000398665.3:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000398665	NM_032482.2	759	Cgc/Tgc																																																																														
ALK	0	MSKCC	GRCh37	2	29917845	29917845	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008422-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			693	352	613	2	ENST00000389048.3:c.823G>T	p.Glu275Ter	p.E275*	ENST00000389048	NM_004304.4	275	Gag/Tag																																																																														
ATR	0	MSKCC	GRCh37	3	142184044	142184044	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008422-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	264	508	0	ENST00000350721.4:c.6936T>G	p.Ile2312Met	p.I2312M	ENST00000350721	NM_001184.3	2312	atT/atG																																																																														
ASXL2	0	MSKCC	GRCh37	2	26022344	26022344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008422-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			873	110	509	0	ENST00000435504.4:c.313C>T	p.Gln105Ter	p.Q105*	ENST00000435504		105	Cag/Tag																																																																														
PTPRT	0	MSKCC	GRCh37	20	41400086	41400086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008422-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			468	28	445	2	ENST00000373198.4:c.673C>A	p.Leu225Ile	p.L225I	ENST00000373198	NM_133170.3	225	Ctt/Att																																																																														
PTCH1	0	MSKCC	GRCh37	9	98220339	98220339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	147	452	0	ENST00000331920.6:c.3124G>A	p.Val1042Met	p.V1042M	ENST00000331920	NM_000264.3	1042	Gtg/Atg																																																																														
CSDE1	0	MSKCC	GRCh37	1	115262240	115262240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	231	565	0	ENST00000438362.2:c.2314C>T	p.Arg772Cys	p.R772C	ENST00000438362	NM_001242891.1	772	Cgc/Tgc																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22008901	22008901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1588	318	876	0	ENST00000276925.6:c.52C>G	p.Leu18Val	p.L18V	ENST00000276925	NM_004936.3	18	Ctg/Gtg																																																																														
SPEN	0	MSKCC	GRCh37	1	16260837	16260837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	87	704	1	ENST00000375759.3:c.8102C>T	p.Thr2701Met	p.T2701M	ENST00000375759	NM_015001.2	2701	aCg/aTg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	125	608	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	57	585	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
CSF3R	0	MSKCC	GRCh37	1	36935322	36935323	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	186	1024	3	ENST00000361632.4:c.1404dupC	p.Ser469GlnfsTer5	p.S469Qfs*5	ENST00000361632		468	-/C																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120466515	120466515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	51	792	0	ENST00000256646.2:c.4604C>T	p.Ala1535Val	p.A1535V	ENST00000256646	NM_024408.3	1535	gCt/gTt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	107	797	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137077	64137077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	50	651	0	ENST00000334205.4:c.1588G>A	p.Asp530Asn	p.D530N	ENST00000334205	NM_003942.2	530	Gac/Aac																																																																														
FGF3	0	MSKCC	GRCh37	11	69625218	69625218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	194	972	1	ENST00000334134.2:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000334134	NM_005247.2	192	cGg/cAg																																																																														
EED	0	MSKCC	GRCh37	11	85963230	85963230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	50	582	0	ENST00000263360.6:c.308G>T	p.Trp103Leu	p.W103L	ENST00000263360	NM_003797.3	103	tGg/tTg																																																																														
PGR	0	MSKCC	GRCh37	11	100922257	100922257	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	25	561	0	ENST00000325455.5:c.2255A>G	p.Gln752Arg	p.Q752R	ENST00000325455	NM_001202474.3	752	cAg/cGg																																																																														
ATM	0	MSKCC	GRCh37	11	108139269	108139269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	59	938	2	ENST00000278616.4:c.2771G>A	p.Arg924Gln	p.R924Q	ENST00000278616	NM_000051.3	924	cGg/cAg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343712	118343712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	131	614	0	ENST00000534358.1:c.1838G>A	p.Arg613Gln	p.R613Q	ENST00000534358	NM_005933.3	613	cGa/cAa																																																																														
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	57	889	1	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																																																														
KMT2A	0	MSKCC	GRCh37	11	118369140	118369140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	37	545	0	ENST00000534358.1:c.5858G>A	p.Cys1953Tyr	p.C1953Y	ENST00000534358	NM_005933.3	1953	tGc/tAc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118371737	118371737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	98	406	0	ENST00000534358.1:c.6194G>A	p.Arg2065His	p.R2065H	ENST00000534358	NM_005933.3	2065	cGc/cAc																																																																														
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	56	533	3	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426973	49426973	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	158	730	1	ENST00000301067.7:c.11515del	p.Gln3839SerfsTer42	p.Q3839Sfs*42	ENST00000301067	NM_003482.3	3839	Cag/ag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427171	49427171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	136	985	1	ENST00000301067.7:c.11317C>T	p.Pro3773Ser	p.P3773S	ENST00000301067	NM_003482.3	3773	Ccc/Tcc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	214	1064	8	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																																																														
PTPN11	0	MSKCC	GRCh37	12	112924315	112924315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	64	949	2	ENST00000351677.2:c.1261C>T	p.Arg421Trp	p.R421W	ENST00000351677	NM_002834.3	421	Cgg/Tgg																																																																														
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	161	916	21	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																																																														
POLE	0	MSKCC	GRCh37	12	133220011	133220011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	139	738	0	ENST00000320574.5:c.4426T>C	p.Phe1476Leu	p.F1476L	ENST00000320574	NM_006231.2	1476	Ttc/Ctc																																																																														
LATS2	0	MSKCC	GRCh37	13	21562178	21562178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1207	225	1435	1	ENST00000382592.4:c.1741C>T	p.Arg581Cys	p.R581C	ENST00000382592	NM_014572.2	581	Cgc/Tgc																																																																														
LATS2	0	MSKCC	GRCh37	13	21563296	21563296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	82	1111	0	ENST00000382592.4:c.623C>T	p.Pro208Leu	p.P208L	ENST00000382592	NM_014572.2	208	cCg/cTg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907230	32907230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	60	602	0	ENST00000380152.3:c.1615G>A	p.Gly539Arg	p.G539R	ENST00000380152		539	Gga/Aga																																																																														
ERCC5	0	MSKCC	GRCh37	13	103513869	103513869	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	65	462	0	ENST00000355739.4:c.685T>G	p.Phe229Val	p.F229V	ENST00000355739	NM_000123.3	229	Ttt/Gtt																																																																														
IRS2	0	MSKCC	GRCh37	13	110434477	110434477	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	70	780	1	ENST00000375856.3:c.3924del	p.Pro1309ArgfsTer22	p.P1309Rfs*22	ENST00000375856	NM_003749.2	1308	ggG/gg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457692	67457692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	111	874	0	ENST00000327367.4:c.502G>A	p.Ala168Thr	p.A168T	ENST00000327367	NM_005902.3	168	Gca/Aca																																																																														
TSC2	0	MSKCC	GRCh37	16	2129568	2129568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	64	856	0	ENST00000219476.3:c.3295G>A	p.Gly1099Arg	p.G1099R	ENST00000219476	NM_000548.3	1099	Ggg/Agg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3777792	3777792	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200566758		P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1190	167	1268	0	ENST00000262367.5:c.7256C>T	p.Ala2419Val	p.A2419V	ENST00000262367	NM_004380.2	2419	gCg/gTg																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	143	626	3	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3831211	3831212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	108	527	0	ENST00000262367.5:c.1669dup	p.Ala557GlyfsTer14	p.A557Gfs*14	ENST00000262367	NM_004380.2	557	gcc/gGcc																																																																														
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	39	717	0	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72822609	72822609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	47	784	1	ENST00000268489.5:c.9566C>T	p.Ala3189Val	p.A3189V	ENST00000268489	NM_006885.3	3189	gCg/gTg																																																																														
PLCG2	0	MSKCC	GRCh37	16	81941375	81941375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	101	539	0	ENST00000359376.3:c.1553C>T	p.Pro518Leu	p.P518L	ENST00000359376	NM_002661.3	518	cCc/cTc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351682	89351682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	137	998	2	ENST00000301030.4:c.1268G>A	p.Gly423Glu	p.G423E	ENST00000301030	NM_001256183.1	423	gGa/gAa																																																																														
RNF43	0	MSKCC	GRCh37	17	56436128	56436128	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	94	873	0	ENST00000407977.2:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000407977		337	Cga/Tga																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533517	63533517	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	128	918	1	ENST00000307078.5:c.1637del	p.Gly546AlafsTer143	p.G546Afs*143	ENST00000307078	NM_004655.3	546	gGc/gc																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774681	73774684	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	13	160	0	ENST00000254810.4:c.403_406del	p.Arg135LeufsTer3	p.R135Lfs*3	ENST00000254810	NM_005324.3	135	AGAGct/ct																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39629562	39629562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	118	553	0	ENST00000262039.4:c.2260del	p.Thr754GlnfsTer7	p.T754Qfs*7	ENST00000262039	NM_002647.2	752	acA/ac																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14628987	14628987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	57	849	0	ENST00000254322.2:c.175C>T	p.Arg59Cys	p.R59C	ENST00000254322	NM_006145.1	59	Cgc/Tgc																																																																														
BRD4	0	MSKCC	GRCh37	19	15350625	15350625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35676845		P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	64	1121	2	ENST00000263377.2:c.3290G>A	p.Arg1097His	p.R1097H	ENST00000263377	NM_058243.2	1097	cGt/cAt																																																																														
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	59	1119	9	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36211082	36211082	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	217	1096	1	ENST00000222270.7:c.837del	p.Arg280GlyfsTer25	p.R280Gfs*25	ENST00000222270	NM_014727.1	278	aCc/ac																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216184	36216184	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	143	749	6	ENST00000222270.7:c.3596del	p.Gly1199AlafsTer156	p.G1199Afs*156	ENST00000222270	NM_014727.1	1198	Ggg/gg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867349	45867349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	50	992	4	ENST00000391945.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000391945	NM_000400.3	282	Cgg/Tgg																																																																														
POLD1	0	MSKCC	GRCh37	19	50905543	50905543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	81	1017	1	ENST00000440232.2:c.671G>A	p.Arg224His	p.R224H	ENST00000440232	NM_002691.3	224	cGc/cAc																																																																														
POLD1	0	MSKCC	GRCh37	19	50905960	50905960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	195	1032	1	ENST00000440232.2:c.932G>A	p.Arg311His	p.R311H	ENST00000440232	NM_002691.3	311	cGc/cAc																																																																														
IRS1	0	MSKCC	GRCh37	2	227660217	227660217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	195	997	0	ENST00000305123.5:c.3238A>G	p.Asn1080Asp	p.N1080D	ENST00000305123	NM_005544.2	1080	Aac/Gac																																																																														
PPARG	0	MSKCC	GRCh37	3	12475550	12475550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	61	753	0	ENST00000287820.6:c.1424C>T	p.Thr475Met	p.T475M	ENST00000287820	NM_015869.4	475	aCg/aTg																																																																														
MST1R	0	MSKCC	GRCh37	3	49934828	49934828	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs61734381		P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	113	918	0	ENST00000296474.3:c.2068C>T	p.Gln690Ter	p.Q690*	ENST00000296474	NM_002447.2	690	Caa/Taa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71015131	71015131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	68	539	0	ENST00000318789.4:c.1799G>T	p.Ser600Ile	p.S600I	ENST00000318789	NM_032682.5	600	aGc/aTc																																																																														
FOXP1	0	MSKCC	GRCh37	3	71027094	71027094	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	86	758	0	ENST00000318789.4:c.1233del	p.Ala412ProfsTer3	p.A412Pfs*3	ENST00000318789	NM_032682.5	411	acC/ac																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114152	73114152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	90	707	2	ENST00000356692.5:c.788C>T	p.Thr263Met	p.T263M	ENST00000356692		263	aCg/aTg																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138376557	138376557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	117	796	2	ENST00000289153.2:c.2917del	p.Thr973GlnfsTer19	p.T973Qfs*19	ENST00000289153	NM_006219.2	973	Aca/ca																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665342	138665342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	139	1150	2	ENST00000330315.3:c.223C>T	p.Leu75Phe	p.L75F	ENST00000330315	NM_023067.3	75	Ctc/Ttc																																																																														
BCL6	0	MSKCC	GRCh37	3	187446297	187446297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	111	758	0	ENST00000232014.4:c.1391G>A	p.Ser464Asn	p.S464N	ENST00000232014	NM_001130845.1	464	aGc/aAc																																																																														
TP63	0	MSKCC	GRCh37	3	189455618	189455618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	95	744	1	ENST00000264731.3:c.152G>A	p.Ser51Asn	p.S51N	ENST00000264731	NM_003722.4	51	aGt/aAt																																																																														
TP63	0	MSKCC	GRCh37	3	189586470	189586470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	125	514	3	ENST00000264731.3:c.1094C>T	p.Ser365Leu	p.S365L	ENST00000264731	NM_003722.4	365	tCg/tTg																																																																														
FGFR3	0	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	194	1205	1	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1902419	1902420	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	61	911	0	ENST00000382891.5:c.40_41del	p.Ser14CysfsTer42	p.S14Cfs*42	ENST00000382891	NM_133335.3	13	cAG/c																																																																														
KDR	0	MSKCC	GRCh37	4	55976876	55976876	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	148	881	0	ENST00000263923.4:c.1036del	p.Glu346SerfsTer17	p.E346Sfs*17	ENST00000263923	NM_002253.2	346	Gag/ag																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	48	678	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
MSH3	0	MSKCC	GRCh37	5	80021292	80021292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	75	671	1	ENST00000265081.6:c.1361G>A	p.Arg454Gln	p.R454Q	ENST00000265081	NM_002439.4	454	cGa/cAa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149506139	149506139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	113	774	1	ENST00000261799.4:c.1618G>A	p.Ala540Thr	p.A540T	ENST00000261799	NM_002609.3	540	Gcc/Acc																																																																														
NSD1	0	MSKCC	GRCh37	5	176665280	176665280	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	112	502	1	ENST00000439151.2:c.3964C>T	p.Arg1322Ter	p.R1322*	ENST00000439151	NM_022455.4	1322	Cga/Tga																																																																														
NSD1	0	MSKCC	GRCh37	5	176694712	176694712	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	79	470	0	ENST00000439151.2:c.5296C>T	p.Arg1766Ter	p.R1766*	ENST00000439151	NM_022455.4	1766	Cga/Tga																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32178641	32178641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	74	983	0	ENST00000375023.3:c.2753G>A	p.Cys918Tyr	p.C918Y	ENST00000375023	NM_004557.3	918	tGc/tAc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651912	36651912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	47	742	0	ENST00000244741.5:c.34C>T	p.Pro12Ser	p.P12S	ENST00000244741	NM_000389.4	12	Cca/Tca																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652302	36652302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	113	705	1	ENST00000244741.5:c.424C>T	p.Arg142Trp	p.R142W	ENST00000244741	NM_000389.4	142	Cgg/Tgg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157470017	157470018	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	32	563	0	ENST00000346085.5:c.2813_2814delTG	p.Val938GlufsTer3	p.V938Efs*3	ENST00000346085	NM_020732.3	937	acTGtg/actg																																																																														
RAC1	0	MSKCC	GRCh37	7	6431652	6431652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	88	719	0	ENST00000356142.4:c.205C>A	p.Pro69Thr	p.P69T	ENST00000356142	NM_018890.3	69	Ccc/Acc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98221971	98221971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	49	684	1	ENST00000331920.6:c.2798C>T	p.Ala933Val	p.A933V	ENST00000331920	NM_000264.3	933	gCg/gTg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139391307	139391307	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	161	1122	1	ENST00000277541.6:c.6884A>T	p.Asn2295Ile	p.N2295I	ENST00000277541	NM_017617.3	2295	aAt/aTt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399841	139399841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	126	1183	0	ENST00000277541.6:c.4507G>A	p.Gly1503Ser	p.G1503S	ENST00000277541	NM_017617.3	1503	Ggc/Agc																																																																														
TRAF2	0	MSKCC	GRCh37	9	139818316	139818316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	107	804	1	ENST00000247668.2:c.1151G>A	p.Ser384Asn	p.S384N	ENST00000247668	NM_021138.3	384	aGc/aAc																																																																														
CRLF2	0	MSKCC	GRCh37	X	1321396	1321396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	70	508	0	ENST00000381566.1:c.359G>A	p.Ser120Asn	p.S120N	ENST00000381566		120	aGt/aAt																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226008	53226009	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	121	581	0	ENST00000375401.3:c.2840dup	p.Leu947PhefsTer17	p.L947Ffs*17	ENST00000375401	NM_004187.3	947	ttg/ttTg																																																																														
BTK	0	MSKCC	GRCh37	X	100612503	100612503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	101	341	0	ENST00000308731.7:c.1171G>T	p.Gly391Ter	p.G391*	ENST00000308731	NM_000061.2	391	Gga/Tga																																																																														
EPHB1	0	MSKCC	GRCh37	3	134968251	134968251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	306	767	2	ENST00000398015.3:c.2764G>A	p.Ala922Thr	p.A922T	ENST00000398015	NM_004441.4	922	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7578441	7578441	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	468	850	0	ENST00000269305.4:c.489C>G	p.Tyr163Ter	p.Y163*	ENST00000269305	NM_001126112.2	163	taC/taG																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427543	49427543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	329	590	0	ENST00000301067.7:c.10945G>A	p.Gly3649Ser	p.G3649S	ENST00000301067	NM_003482.3	3649	Ggt/Agt																																																																														
PRKD1	0	MSKCC	GRCh37	14	30068253	30068253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	307	687	0	ENST00000331968.5:c.2146T>G	p.Ser716Ala	p.S716A	ENST00000331968	NM_002742.2	716	Tca/Gca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832556	72832556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	253	545	0	ENST00000268489.5:c.4025G>T	p.Gly1342Val	p.G1342V	ENST00000268489	NM_006885.3	1342	gGa/gTa																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52723103	52723106	+	frameshift_variant	Frame_Shift_Del	DEL	CTGG	CTGG	-			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	136	548	1	ENST00000322088.6:c.1292_1295del	p.Ala431AspfsTer35	p.A431Dfs*35	ENST00000322088	NM_014225.5	430	CTGGct/ct																																																																														
KDR	0	MSKCC	GRCh37	4	55976929	55976929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	209	485	0	ENST00000263923.4:c.983C>A	p.Pro328His	p.P328H	ENST00000263923	NM_002253.2	328	cCt/cAt																																																																														
IRF4	0	MSKCC	GRCh37	6	394945	394945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	293	674	0	ENST00000380956.4:c.341G>A	p.Ser114Asn	p.S114N	ENST00000380956	NM_001195286.1	114	aGc/aAc																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20156713	20156713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	81	693	0	ENST00000379607.5:c.44G>A	p.Gly15Asp	p.G15D	ENST00000379607	NM_001412.3	15	gGt/gAt																																																																														
STAG2	0	MSKCC	GRCh37	X	123179198	123179198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	40	499	0	ENST00000218089.9:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000218089	NM_001042749.1	216	cGa/cAa																																																																														
RNF43	0	MSKCC	GRCh37	17	56437605	56437605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	102	581	0	ENST00000407977.2:c.857G>A	p.Arg286Gln	p.R286Q	ENST00000407977		286	cGg/cAg																																																																														
CIC	0	MSKCC	GRCh37	19	42799281	42799281	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	69	692	0	ENST00000575354.2:c.4765G>C	p.Glu1589Gln	p.E1589Q	ENST00000575354	NM_015125.3	1589	Gag/Cag																																																																														
SH2D1A	0	MSKCC	GRCh37	X	123504048	123504048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	36	505	0	ENST00000371139.4:c.224G>T	p.Arg75Ile	p.R75I	ENST00000371139	NM_001114937.2	75	aGa/aTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0022522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	226	739	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
KMT2A	0	MSKCC	GRCh37	11	118374265	118374266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	226	573	0	ENST00000534358.1:c.7659dup	p.Glu2554ArgfsTer13	p.E2554Rfs*13	ENST00000534358	NM_005933.3	2553	ata/atAa																																																																														
DNMT1	0	MSKCC	GRCh37	19	10305557	10305557	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	67	712	0	ENST00000340748.4:c.19C>G	p.Pro7Ala	p.P7A	ENST00000340748		7	Cca/Gca																																																																														
KMT2B	0	MSKCC	GRCh37	19	36217202	36217202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	142	1033	2	ENST00000222270.7:c.3951G>T	p.Glu1317Asp	p.E1317D	ENST00000222270	NM_014727.1	1317	gaG/gaT																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163749	32163749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022522-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	144	826	0	ENST00000375023.3:c.5477A>G	p.Glu1826Gly	p.E1826G	ENST00000375023	NM_004557.3	1826	gAg/gGg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	303	787	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200072	138200072	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	170	580	0	ENST00000237289.4:c.1490G>T	p.Arg497Leu	p.R497L	ENST00000237289	NM_001270507.1	497	cGt/cTt																																																																														
CEBPA	0	MSKCC	GRCh37	19	33793016	33793016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	26	151	0	ENST00000498907.2:c.305G>A	p.Gly102Asp	p.G102D	ENST00000498907	NM_004364.3	102	gGc/gAc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636763	8636763	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	168	708	0	ENST00000356435.5:c.146del	p.Gly49GlufsTer23	p.G49Efs*23	ENST00000356435		49	gGa/ga																																																																														
ATRX	0	MSKCC	GRCh37	X	76939111	76939111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	108	708	2	ENST00000373344.5:c.1637G>T	p.Gly546Val	p.G546V	ENST00000373344	NM_000489.3	546	gGg/gTg																																																																														
CSDE1	0	MSKCC	GRCh37	1	115280121	115280121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	179	764	1	ENST00000438362.2:c.511A>T	p.Thr171Ser	p.T171S	ENST00000438362	NM_001242891.1	171	Aca/Tca																																																																														
CSDE1	0	MSKCC	GRCh37	1	115284194	115284194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	191	716	0	ENST00000438362.2:c.92C>T	p.Ser31Leu	p.S31L	ENST00000438362	NM_001242891.1	31	tCa/tTa																																																																														
RET	0	MSKCC	GRCh37	10	43615108	43615108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	245	987	0	ENST00000355710.3:c.2522C>A	p.Pro841Gln	p.P841Q	ENST00000355710	NM_020975.4	841	cCg/cAg																																																																														
ATM	0	MSKCC	GRCh37	11	108121427	108121427	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	90	308	0	ENST00000278616.4:c.1236-1G>T		p.X412_splice	ENST00000278616	NM_000051.3	412																																																																															
ATM	0	MSKCC	GRCh37	11	108199908	108199908	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	45	398	0	ENST00000278616.4:c.7250T>C	p.Leu2417Pro	p.L2417P	ENST00000278616	NM_000051.3	2417	cTg/cCg																																																																														
FOXO1	0	MSKCC	GRCh37	13	41133725	41133725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	61	540	0	ENST00000379561.5:c.1903G>T	p.Val635Leu	p.V635L	ENST00000379561	NM_002015.3	635	Gtg/Ttg																																																																														
TRAF7	0	MSKCC	GRCh37	16	2226351	2226351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	279	904	1	ENST00000326181.6:c.1964G>T	p.Arg655Leu	p.R655L	ENST00000326181	NM_032271.2	655	cGa/cTa																																																																														
ERCC2	0	MSKCC	GRCh37	19	45868190	45868190	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	116	915	1	ENST00000391945.4:c.500A>T	p.Glu167Val	p.E167V	ENST00000391945	NM_000400.3	167	gAg/gTg																																																																														
ALK	0	MSKCC	GRCh37	2	29474002	29474002	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	218	908	0	ENST00000389048.3:c.2173A>G	p.Ile725Val	p.I725V	ENST00000389048	NM_004304.4	725	Atc/Gtc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66189855	66189855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	104	716	0	ENST00000273854.3:c.3091G>T	p.Val1031Leu	p.V1031L	ENST00000273854	NM_004439.5	1031	Gta/Tta																																																																														
FAT1	0	MSKCC	GRCh37	4	187538934	187538934	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	89	647	0	ENST00000441802.2:c.8806del	p.Val2936Ter	p.V2936*	ENST00000441802	NM_005245.3	2936	Gtg/tg																																																																														
HGF	0	MSKCC	GRCh37	7	81358944	81358944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			697	327	688	1	ENST00000222390.5:c.1017G>A	p.Met339Ile	p.M339I	ENST00000222390	NM_000601.4	339	atG/atA																																																																														
PTPRD	0	MSKCC	GRCh37	9	8507426	8507426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	40	382	0	ENST00000356435.5:c.1552C>A	p.Gln518Lys	p.Q518K	ENST00000356435		518	Cag/Aag																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528622	8528622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	73	615	0	ENST00000356435.5:c.510C>A	p.Asn170Lys	p.N170K	ENST00000356435		170	aaC/aaA																																																																														
KDM5C	0	MSKCC	GRCh37	X	53231037	53231037	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	103	701	0	ENST00000375401.3:c.1865G>T	p.Trp622Leu	p.W622L	ENST00000375401	NM_004187.3	622	tGg/tTg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412376	63412376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022433-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	119	929	1	ENST00000330258.3:c.791C>A	p.Ala264Asp	p.A264D	ENST00000330258	NM_152424.3	264	gCc/gAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	183	648	1	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	183	648	1	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971156	21971156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	183	648	1	ENST00000304494.5:c.202G>A	p.Ala68Thr	p.A68T	ENST00000304494	NM_000077.4	68	Gcg/Acg																																																																														
IKBKE	0	MSKCC	GRCh37	1	206652339	206652339	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1677	293	1049	1	ENST00000367120.3:c.1046A>T	p.His349Leu	p.H349L	ENST00000367120	NM_014002.3	349	cAc/cTc																																																																														
TP53	0	MSKCC	GRCh37	17	7572929	7572929	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	167	755	0	ENST00000269305.4:c.1180T>C	p.Ter394ArgextTer9	p.*394Rext*9	ENST00000269305	NM_001126112.2	394	Tga/Cga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467370	66467370	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	69	259	0	ENST00000273854.3:c.899G>C	p.Gly300Ala	p.G300A	ENST00000273854	NM_004439.5	300	gGc/gCc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151933019	151933019	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	38	183	0	ENST00000262189.6:c.2653-1G>A		p.X885_splice	ENST00000262189	NM_170606.2	885																																																																															
CD274	0	MSKCC	GRCh37	9	5457127	5457127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	161	513	0	ENST00000381577.3:c.101G>A	p.Ser34Asn	p.S34N	ENST00000381577	NM_014143.3	34	aGc/aAc																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31379479	31379479	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145632647		P-0022586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	662	627	1	ENST00000328111.2:c.886G>A	p.Val296Ile	p.V296I	ENST00000328111	NM_006892.3	296	Gtc/Atc																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0022586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	65	498	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0022586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	47	333	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0022586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	180	687	0	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
TCF7L2	0	MSKCC	GRCh37	10	114912161	114912162	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	196	716	0	ENST00000543371.1:c.1232dup	p.Met411IlefsTer12	p.M411Ifs*12	ENST00000543371	NM_001198531.1	411	atg/aTtg																																																																														
DOT1L	84444	MSKCC	GRCh37	19	2216560	2216560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777525091		P-0022526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	409	1113	4	ENST00000398665.3:c.2204C>T	p.Thr735Met	p.T735M	ENST00000398665	NM_032482.2	735	aCg/aTg																																																																														
TERT	0	MSKCC	GRCh37	5	1294577	1294577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	157	761	1	ENST00000310581.5:c.424C>T	p.Arg142Cys	p.R142C	ENST00000310581	NM_198253.2	142	Cgc/Tgc																																																																														
RNF43	0	MSKCC	GRCh37	17	56440748	56440748	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	115	692	1	ENST00000407977.2:c.470T>C	p.Leu157Pro	p.L157P	ENST00000407977		157	cTg/cCg																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732286	74732286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	61	358	0	ENST00000359995.5:c.623G>T	p.Ser208Ile	p.S208I	ENST00000359995	NM_001195427.1	208	aGt/aTt																																																																														
JAK3	0	MSKCC	GRCh37	19	17953298	17953298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	186	1142	1	ENST00000458235.1:c.688G>C	p.Asp230His	p.D230H	ENST00000458235	NM_000215.3	230	Gac/Cac																																																																														
MAPK1	0	MSKCC	GRCh37	22	22123594	22123594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	90	715	0	ENST00000215832.6:c.982C>A	p.Pro328Thr	p.P328T	ENST00000215832	NM_002745.4	328	Cca/Aca																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643705	52643715	+	frameshift_variant	Frame_Shift_Del	DEL	TCATGACAAAG	TCATGACAAAG	-			P-0022526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	134	748	0	ENST00000394830.3:c.2181_2191del	p.Phe728ValfsTer2	p.F728Vfs*2	ENST00000394830	NM_018313.4	727	gaCTTTGTCATGAtg/gatg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52663004	52663004	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	80	550	0	ENST00000394830.3:c.1349G>C	p.Cys450Ser	p.C450S	ENST00000394830	NM_018313.4	450	tGt/tCt																																																																														
EPHA5	0	MSKCC	GRCh37	4	66231667	66231667	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	57	741	0	ENST00000273854.3:c.2033A>G	p.Glu678Gly	p.E678G	ENST00000273854	NM_004439.5	678	gAg/gGg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139405684	139405684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1241	174	1212	0	ENST00000277541.6:c.2507G>A	p.Ser836Asn	p.S836N	ENST00000277541	NM_017617.3	836	aGc/aAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577546	7577547	+	missense_variant	Missense_Mutation	DNP	GC	GC	TG			P-0022557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	397	859	3	ENST00000269305.4:c.734_735delinsCA	p.Gly245Ala	p.G245A	ENST00000269305	NM_001126112.2	245	gGC/gCA																																																																														
FGFR1	0	MSKCC	GRCh37	8	38277070	38277070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	1544	796	0	ENST00000425967.3:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000425967	NM_001174067.1	453	cCt/cTt																																																																														
NCOR1	0	MSKCC	GRCh37	17	16001751	16001755	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAC	GAGAC	-			P-0022466-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	97	533	1	ENST00000268712.3:c.2746_2750del	p.Val916IlefsTer30	p.V916Ifs*30	ENST00000268712	NM_006311.3	916	GTCTCa/a																																																																														
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	187	734	3	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
AKT3	0	MSKCC	GRCh37	1	243777010	243777010	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200428825		P-0022490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			155	48	595	1	ENST00000263826.5:c.659G>A	p.Arg220His	p.R220H	ENST00000263826	NM_005465.4	220	cGt/cAt																																																																														
MYD88	0	MSKCC	GRCh37	3	38180252	38180252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	110	578	0	ENST00000396334.3:c.100C>T	p.Pro34Ser	p.P34S	ENST00000396334	NM_002468.4	34	Ccc/Tcc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710518	114710518	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0022490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	67	271	0	ENST00000543371.1:c.3G>A	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	atG/atA																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346811	89346811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	10	264	0	ENST00000301030.4:c.6139G>A	p.Ala2047Thr	p.A2047T	ENST00000301030	NM_001256183.1	2047	Gcc/Acc																																																																														
PMS1	0	MSKCC	GRCh37	2	190719828	190719828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	27	264	0	ENST00000441310.2:c.1830G>T	p.Lys610Asn	p.K610N	ENST00000441310	NM_000534.4	610	aaG/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021878-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			11	76	528	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	0	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021878-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			181	426	600	1	ENST00000326873.7:c.465-1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
KEAP1	0	MSKCC	GRCh37	19	10610499	10610500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021878-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			285	477	734	0	ENST00000171111.5:c.210dup	p.Arg71AlafsTer8	p.R71Afs*8	ENST00000171111	NM_203500.1	70	-/G																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11129631	11129631	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0021878-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			190	411	588	0	ENST00000344626.4:c.2439-2A>G		p.X813_splice	ENST00000344626	NM_003072.3	813																																																																															
FAT1	0	MSKCC	GRCh37	4	187541297	187541297	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021878-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			40	99	377	0	ENST00000441802.2:c.6443A>G	p.Lys2148Arg	p.K2148R	ENST00000441802	NM_005245.3	2148	aAa/aGa																																																																														
AMER1	0	MSKCC	GRCh37	X	63413042	63413042	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0021878-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			97	458	439	0	ENST00000330258.3:c.125C>G	p.Ser42Ter	p.S42*	ENST00000330258	NM_152424.3	42	tCa/tGa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5229652	5229652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021878-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			114	10	87	0	ENST00000357368.4:c.2199C>A	p.Asn733Lys	p.N733K	ENST00000357368	NM_002850.3	733	aaC/aaA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	169	520	0				ENST00000310581	NM_198253.2																																																																																
CSF1R	0	MSKCC	GRCh37	5	149456932	149456932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148357861		P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	271	552	0	ENST00000286301.3:c.796G>A	p.Asp266Asn	p.D266N	ENST00000286301	NM_005211.3	266	Gat/Aat																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	622	529	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																																																														
TP63	0	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	362	557	1	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																																																														
NF1	0	MSKCC	GRCh37	17	29548939	29548939	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	92	297	0	ENST00000358273.4:c.1713G>A	p.Trp571Ter	p.W571*	ENST00000358273	NM_001042492.2	571	tgG/tgA																																																																														
RET	0	MSKCC	GRCh37	10	43619154	43619154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	222	538	1	ENST00000355710.3:c.2837C>T	p.Thr946Ile	p.T946I	ENST00000355710	NM_020975.4	946	aCc/aTc																																																																														
POLE	0	MSKCC	GRCh37	12	133202290	133202290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	267	651	0	ENST00000320574.5:c.6598G>A	p.Glu2200Lys	p.E2200K	ENST00000320574	NM_006231.2	2200	Gag/Aag																																																																														
RECQL4	0	MSKCC	GRCh37	8	145740809	145740809	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	312	652	0	ENST00000428558.2:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000428558	NM_004260.3	431	Gag/Tag																																																																														
PTPN11	0	MSKCC	GRCh37	12	112915524	112915524	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	309	480	0	ENST00000351677.2:c.923A>C	p.Asn308Thr	p.N308T	ENST00000351677	NM_002834.3	308	aAt/aCt																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120493418	120493418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	688	487	0	ENST00000256646.2:c.2408C>T	p.Pro803Leu	p.P803L	ENST00000256646	NM_024408.3	803	cCa/cTa																																																																														
PGR	0	MSKCC	GRCh37	11	100998614	100998615	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	211	632	2	ENST00000325455.5:c.1187_1188delinsTT	p.Ala396Val	p.A396V	ENST00000325455	NM_001202474.3	396	gCC/gTT																																																																														
KMT2A	0	MSKCC	GRCh37	11	118371833	118371833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	333	454	0	ENST00000534358.1:c.6290C>T	p.Thr2097Ile	p.T2097I	ENST00000534358	NM_005933.3	2097	aCc/aTc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18466999	18466999	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	203	289	0	ENST00000266497.5:c.1137+1G>A		p.X379_splice	ENST00000266497		379																																																																															
PIK3C2G	0	MSKCC	GRCh37	12	18491475	18491475	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	146	364	0	ENST00000266497.5:c.1388A>C	p.Lys463Thr	p.K463T	ENST00000266497		463	aAa/aCa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427530	49427531	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	270	449	1	ENST00000301067.7:c.10957_10958delinsAA	p.Gly3653Lys	p.G3653K	ENST00000301067	NM_003482.3	3653	GGa/AAa																																																																														
MDM2	0	MSKCC	GRCh37	12	69233316	69233316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	187	268	0	ENST00000462284.1:c.1181C>T	p.Ser394Leu	p.S394L	ENST00000462284	NM_002392.5	394	tCa/tTa																																																																														
FLT1	0	MSKCC	GRCh37	13	28896437	28896437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	272	412	0	ENST00000282397.4:c.3013C>A	p.Gln1005Lys	p.Q1005K	ENST00000282397	NM_002019.4	1005	Caa/Aaa																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40681712	40681712	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	133	315	0	ENST00000249776.8:c.491A>G	p.Lys164Arg	p.K164R	ENST00000249776	NM_033286.3	164	aAa/aGa																																																																														
MGA	0	MSKCC	GRCh37	15	42059173	42059173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	195	351	0	ENST00000219905.7:c.8893C>T	p.Pro2965Ser	p.P2965S	ENST00000219905	NM_001164273.1	2965	Ccc/Tcc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89383382	89383382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	336	717	1	ENST00000301030.4:c.46C>T	p.Pro16Ser	p.P16S	ENST00000301030	NM_001256183.1	16	Ccc/Tcc																																																																														
NF1	0	MSKCC	GRCh37	17	29683999	29683999	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	237	542	1	ENST00000358273.4:c.7760C>A	p.Ser2587Ter	p.S2587*	ENST00000358273	NM_001042492.2	2587	tCa/tAa																																																																														
NCOA3	0	MSKCC	GRCh37	20	46256349	46256349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	190	423	0	ENST00000371998.3:c.577C>T	p.His193Tyr	p.H193Y	ENST00000371998		193	Cat/Tat																																																																														
PIK3CB	0	MSKCC	GRCh37	3	138376634	138376634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	332	455	0	ENST00000289153.2:c.2840C>T	p.Ser947Phe	p.S947F	ENST00000289153	NM_006219.2	947	tCt/tTt																																																																														
PLK2	0	MSKCC	GRCh37	5	57754575	57754575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	253	396	1	ENST00000274289.3:c.472C>T	p.Leu158Phe	p.L158F	ENST00000274289	NM_006622.3	158	Ctc/Ttc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31322982	31322982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	451	770	0	ENST00000412585.2:c.914C>T	p.Thr305Ile	p.T305I	ENST00000412585	NM_005514.6	305	aCc/aTc																																																																														
TEK	0	MSKCC	GRCh37	9	27204970	27204970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	347	493	0	ENST00000380036.4:c.2271G>A	p.Met757Ile	p.M757I	ENST00000380036	NM_000459.3	757	atG/atA																																																																														
CRLF2	0	MSKCC	GRCh37	X	1321335	1321350	+	frameshift_variant	Frame_Shift_Del	DEL	GTCAGAACACGTCACC	GTCAGAACACGTCACC	-			P-0022471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	288	563	0	ENST00000381566.1:c.405_420del	p.Val136CysfsTer?	p.V136Cfs*?	ENST00000381566		135	acGGTGACGTGTTCTGAC/ac																																																																														
GATA3	0	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	101	595	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																														
MSI1	0	MSKCC	GRCh37	12	120795696	120795696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	34	422	0	ENST00000257552.2:c.457G>A	p.Gly153Arg	p.G153R	ENST00000257552	NM_002442.3	153	Ggg/Agg																																																																														
PRKAR1A	0	MSKCC	GRCh37	17	66525130	66525130	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0022468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	127	267	0	ENST00000358598.2:c.889G>C	p.Glu297Gln	p.E297Q	ENST00000358598	NM_212471.2	297	Gag/Cag																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288753	15288753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			191	35	148	0	ENST00000263388.2:c.3986G>T	p.Gly1329Val	p.G1329V	ENST00000263388	NM_000435.2	1329	gGg/gTg																																																																														
NBN	0	MSKCC	GRCh37	8	90965821	90965821	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022468-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	34	322	0	ENST00000265433.3:c.1496C>A	p.Ser499Ter	p.S499*	ENST00000265433	NM_002485.4	499	tCa/tAa																																																																														
PTEN	0	MSKCC	GRCh37	10	89711974	89711974	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	35	564	0	ENST00000371953.3:c.592del	p.Met198Ter	p.M198*	ENST00000371953	NM_000314.4	198	Atg/tg																																																																														
SETD2	0	MSKCC	GRCh37	3	47059127	47059127	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	55	662	1	ENST00000409792.3:c.7533+1G>A		p.X2511_splice	ENST00000409792	NM_014159.6	2511																																																																															
KDM6A	0	MSKCC	GRCh37	X	44922669	44922670	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	245	197	0	ENST00000377967.4:c.1531dup	p.Arg511LysfsTer15	p.R511Kfs*15	ENST00000377967	NM_021140.2	510	-/A																																																																														
TP53	0	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	483	729	2	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc																																																																														
DICER1	0	MSKCC	GRCh37	14	95590816	95590816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	543	560	3	ENST00000343455.3:c.1093C>T	p.Pro365Ser	p.P365S	ENST00000343455	NM_177438.2	365	Cct/Tct																																																																														
NF2	0	MSKCC	GRCh37	22	30050667	30050667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	135	600	1	ENST00000338641.4:c.469G>A	p.Val157Ile	p.V157I	ENST00000338641	NM_000268.3	157	Gtt/Att																																																																														
CDKN2C	0	MSKCC	GRCh37	1	51436099	51436125	+	inframe_deletion	In_Frame_Del	DEL	AACTTACTAGTTTGTTGCAAAATAATG	AACTTACTAGTTTGTTGCAAAATAATG	-			P-0022503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	40	525	0	ENST00000262662.1:c.59_85del	p.Gln20_Val29delinsLeu	p.Q20_V29delinsL	ENST00000262662		20	cAACTTACTAGTTTGTTGCAAAATAATGta/cta																																																																														
ATM	0	MSKCC	GRCh37	11	108196079	108196079	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	24	718	2	ENST00000278616.4:c.6615G>A	p.Trp2205Ter	p.W2205*	ENST00000278616	NM_000051.3	2205	tgG/tgA																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433904	49433904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	43	1058	1	ENST00000301067.7:c.7649del	p.Pro2550LeufsTer33	p.P2550Lfs*33	ENST00000301067	NM_003482.3	2550	cCt/ct																																																																														
NTRK3	0	MSKCC	GRCh37	15	88669525	88669525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	32	762	2	ENST00000360948.2:c.1373G>A	p.Arg458Gln	p.R458Q	ENST00000360948	NM_001012338.2	458	cGa/cAa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829847	72829847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	39	1063	0	ENST00000268489.5:c.6734C>T	p.Ser2245Leu	p.S2245L	ENST00000268489	NM_006885.3	2245	tCa/tTa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	30	845	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151843770	151843770	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	42	632	1	ENST00000262189.6:c.13945G>T	p.Glu4649Ter	p.E4649*	ENST00000262189	NM_170606.2	4649	Gaa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	110	736	0	ENST00000269305.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000269305	NM_001126112.2	337	cGc/cAc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	538	1053	0	ENST00000171111.5:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000171111	NM_203500.1	422	Gat/Aat																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944157	81944157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	389	715	0	ENST00000359376.3:c.1766G>A	p.Arg589His	p.R589H	ENST00000359376	NM_002661.3	589	cGc/cAc																																																																														
FLT4	2324	MSKCC	GRCh37	5	180045839	180045839	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140041761		P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	491	850	3	ENST00000261937.6:c.2932G>A	p.Asp978Asn	p.D978N	ENST00000261937	NM_182925.4	978	Gac/Aac																																																																														
STK11	0	MSKCC	GRCh37	19	1221981	1221981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	469	854	1	ENST00000326873.7:c.896C>T	p.Ser299Phe	p.S299F	ENST00000326873	NM_000455.4	299	tCc/tTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416417	49416417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	345	703	1	ENST00000301067.7:c.16294C>T	p.Arg5432Trp	p.R5432W	ENST00000301067	NM_003482.3	5432	Cgg/Tgg																																																																														
EED	0	MSKCC	GRCh37	11	85966317	85966317	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	113	512	0	ENST00000263360.6:c.414C>A	p.Tyr138Ter	p.Y138*	ENST00000263360	NM_003797.3	138	taC/taA																																																																														
SLX4	0	MSKCC	GRCh37	16	3658881	3658881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144832924		P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	329	694	0	ENST00000294008.3:c.85C>T	p.Arg29Cys	p.R29C	ENST00000294008	NM_032444.2	29	Cgc/Tgc																																																																														
CYLD	0	MSKCC	GRCh37	16	50785817	50785817	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	110	439	0	ENST00000398568.2:c.807G>C	p.Met269Ile	p.M269I	ENST00000398568	NM_001042412.1	269	atG/atC																																																																														
MST1R	0	MSKCC	GRCh37	3	49932666	49932666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	437	962	0	ENST00000296474.3:c.3205G>A	p.Glu1069Lys	p.E1069K	ENST00000296474	NM_002447.2	1069	Gag/Aag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201726	66201726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	293	725	1	ENST00000273854.3:c.2776G>A	p.Asp926Asn	p.D926N	ENST00000273854	NM_004439.5	926	Gat/Aat																																																																														
NSD1	0	MSKCC	GRCh37	5	176678849	176678849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	199	465	0	ENST00000439151.2:c.4760G>A	p.Arg1587His	p.R1587H	ENST00000439151	NM_022455.4	1587	cGc/cAc																																																																														
HIST1H3G	0	MSKCC	GRCh37	6	26271269	26271269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	314	737	0	ENST00000305910.3:c.344C>T	p.Ala115Val	p.A115V	ENST00000305910	NM_003534.2	115	gCt/gTt																																																																														
JAK2	0	MSKCC	GRCh37	9	5073735	5073735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	154	597	0	ENST00000381652.3:c.1814C>T	p.Ser605Phe	p.S605F	ENST00000381652	NM_004972.3	605	tCt/tTt																																																																														
JAK2	0	MSKCC	GRCh37	9	5077458	5077458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	87	488	0	ENST00000381652.3:c.1870C>G	p.Leu624Val	p.L624V	ENST00000381652	NM_004972.3	624	Ctg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	252	636	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	311	629	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0022537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	100	319	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
FOXO1	0	MSKCC	GRCh37	13	41239938	41239938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	59	52	0	ENST00000379561.5:c.412C>T	p.Pro138Ser	p.P138S	ENST00000379561	NM_002015.3	138	Ccc/Tcc																																																																														
TSC2	0	MSKCC	GRCh37	16	2111887	2111887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022537-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	187	610	1	ENST00000219476.3:c.1135G>A	p.Glu379Lys	p.E379K	ENST00000219476	NM_000548.3	379	Gag/Aag																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120458336	120458336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022533-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	52	575	0	ENST00000256646.2:c.7009C>T	p.Pro2337Ser	p.P2337S	ENST00000256646	NM_024408.3	2337	Ccc/Tcc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	129	604	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022432-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	146	628	0				ENST00000310581	NM_198253.2																																																																																
BRCA2	0	MSKCC	GRCh37	13	32914562	32914562	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	108	849	0	ENST00000380152.3:c.6070C>A	p.Gln2024Lys	p.Q2024K	ENST00000380152		2024	Cag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	45	548	0				ENST00000310581	NM_198253.2																																																																																
CBL	0	MSKCC	GRCh37	11	119148919	119148919	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	21	452	1	ENST00000264033.4:c.1139T>C	p.Leu380Pro	p.L380P	ENST00000264033	NM_005188.3	380	cTa/cCa																																																																														
POLE	0	MSKCC	GRCh37	12	133226084	133226084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	72	784	0	ENST00000320574.5:c.3813G>T	p.Trp1271Cys	p.W1271C	ENST00000320574	NM_006231.2	1271	tgG/tgT																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665522	138665522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	69	672	0	ENST00000330315.3:c.43C>A	p.Leu15Met	p.L15M	ENST00000330315	NM_023067.3	15	Ctg/Atg																																																																														
NF1	0	MSKCC	GRCh37	17	29527568	29527569	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0022511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	31	906	0	ENST00000358273.4:c.1019_1020delCT	p.Ser340CysfsTer12	p.S340Cfs*12	ENST00000358273	NM_001042492.2	339	aaCTct/aact																																																																														
TP53	0	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	266	1044	0	ENST00000269305.4:c.464C>T	p.Thr155Ile	p.T155I	ENST00000269305	NM_001126112.2	155	aCc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	39	610	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	45	232	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0022539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	111	607	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																																																														
GATA3	0	MSKCC	GRCh37	10	8111497	8111497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	138	700	1	ENST00000346208.3:c.983G>T	p.Trp328Leu	p.W328L	ENST00000346208		328	tGg/tTg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30105554	30105554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022425-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	587	863	0	ENST00000331968.5:c.1132G>A	p.Asp378Asn	p.D378N	ENST00000331968	NM_002742.2	378	Gac/Aac																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0021762-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			118	296	1027	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0021762-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	100	918	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
CSDE1	0	MSKCC	GRCh37	1	115282460	115282460	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021762-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			374	47	882	0	ENST00000438362.2:c.190A>G	p.Asn64Asp	p.N64D	ENST00000438362	NM_001242891.1	64	Aat/Gat																																																																														
MGA	0	MSKCC	GRCh37	15	42041093	42041108	+	frameshift_variant	Frame_Shift_Del	DEL	CCAACTTACAGCCTGT	CCAACTTACAGCCTGT	-			P-0021762-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	76	971	0	ENST00000219905.7:c.5472_5487del	p.Asn1825CysfsTer8	p.N1825Cfs*8	ENST00000219905	NM_001164273.1	1824	cCCAACTTACAGCCTGTc/cc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3788462	3788680	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACGCATAAAACTTAAAATACCCATTATTTCACGGAATAAACATACAGTAAAAAATAAAGGGTTCTTACTAGTTCCAAATAATTTAATCCAAACTCACCCTAATTTCTTCACATACTCTAAATATCCAATAAGGATCTCATGGTAAACGGCTGTGCGGAGGCAACGTGGCCGGAAGAAATGAATACTATCCAGATAAGAAATGTACACACGCCTGTGGG	AACGCATAAAACTTAAAATACCCATTATTTCACGGAATAAACATACAGTAAAAAATAAAGGGTTCTTACTAGTTCCAAATAATTTAATCCAAACTCACCCTAATTTCTTCACATACTCTAAATATCCAATAAGGATCTCATGGTAAACGGCTGTGCGGAGGCAACGTGGCCGGAAGAAATGAATACTATCCAGATAAGAAATGTACACACGCCTGTGGG	-			P-0021762-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			36	10	131	0	ENST00000262367.5:c.4281-7_4394+98del		p.X1427_splice	ENST00000262367	NM_004380.2	1427																																																																															
EPCAM	0	MSKCC	GRCh37	2	47601113	47601113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021762-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	42	758	0	ENST00000263735.4:c.351G>C	p.Trp117Cys	p.W117C	ENST00000263735	NM_002354.2	117	tgG/tgC																																																																														
PBRM1	0	MSKCC	GRCh37	3	52682394	52682394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021762-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			255	105	726	0	ENST00000394830.3:c.779A>G	p.Lys260Arg	p.K260R	ENST00000394830	NM_018313.4	260	aAa/aGa																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	237	795	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	309	742	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	293	841	1	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	88	325	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106467	27106467	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	228	600	0	ENST00000324856.7:c.6079del	p.Ala2027HisfsTer3	p.A2027Hfs*3	ENST00000324856	NM_006015.4	2026	caG/ca																																																																														
EPHA3	0	MSKCC	GRCh37	3	89457283	89457283	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	85	458	0	ENST00000336596.2:c.1762+2del		p.X588_splice	ENST00000336596	NM_005233.5	588																																																																															
APC	0	MSKCC	GRCh37	5	112155044	112155044	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	T			P-0022284-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	185	437	0	ENST00000257430.4:c.1312+3A>T		p.X438_splice	ENST00000257430	NM_000038.5	438																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	75	709	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	50	610	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	38	327	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	268	477	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	50	895	0	ENST00000269305.4:c.470T>C	p.Val157Ala	p.V157A	ENST00000269305	NM_001126112.2	157	gTc/gCc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72984825	72984825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	141	663	0	ENST00000268489.5:c.2759G>A	p.Gly920Glu	p.G920E	ENST00000268489	NM_006885.3	920	gGg/gAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	51	960	2	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	41	676	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																																																														
CCND1	0	MSKCC	GRCh37	11	69466021	69466022	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	60	1166	2	ENST00000227507.2:c.859_860delinsGA	p.Pro287Asp	p.P287D	ENST00000227507	NM_053056.2	287	CCc/GAc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	67	1297	4	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	52	937	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	39	833	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ARID2	0	MSKCC	GRCh37	12	46246296	46246296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	33	474	0	ENST00000334344.6:c.4390C>T	p.Arg1464Cys	p.R1464C	ENST00000334344	NM_152641.2	1464	Cgc/Tgc																																																																														
CTCF	0	MSKCC	GRCh37	16	67644943	67644944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	33	680	0	ENST00000264010.4:c.210dup	p.Leu71SerfsTer6	p.L71Sfs*6	ENST00000264010	NM_006565.3	70	ctt/cTtt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	31	572	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
NF1	0	MSKCC	GRCh37	17	29579995	29579996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	32	680	3	ENST00000358273.4:c.4157dupA	p.Glu1387GlyfsTer8	p.E1387Gfs*8	ENST00000358273	NM_001042492.2	1384	gaa/gAaa																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	80	933	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	44	819	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185198306	185198306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	44	695	1	ENST00000265026.3:c.2788C>T	p.Arg930Cys	p.R930C	ENST00000265026	NM_004721.4	930	Cgt/Tgt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67576487	67576487	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	36	770	0	ENST00000274335.5:c.770del	p.Asn257IlefsTer3	p.N257Ifs*3	ENST00000274335		256	Aaa/aa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591288	67591288	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	32	569	0	ENST00000274335.5:c.1786G>T	p.Glu596Ter	p.E596*	ENST00000274335		596	Gag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0022401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	271	640	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
POLE	0	MSKCC	GRCh37	12	133209274	133209274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181570274		P-0022401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	76	832	0	ENST00000320574.5:c.6112G>A	p.Glu2038Lys	p.E2038K	ENST00000320574	NM_006231.2	2038	Gag/Aag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	337	911	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
TP53	0	MSKCC	GRCh37	17	7576910	7576910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1059	80	883	0	ENST00000269305.4:c.936delC	p.Ser313AlafsTer32	p.S313Afs*32	ENST00000269305	NM_001126112.2	312	acC/ac																																																																														
DIS3	0	MSKCC	GRCh37	13	73336116	73336116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	21	297	0	ENST00000377767.4:c.2287C>T	p.His763Tyr	p.H763Y	ENST00000377767	NM_014953.3	763	Cat/Tat																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716326	52716326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	275	705	0	ENST00000322088.6:c.770G>T	p.Trp257Leu	p.W257L	ENST00000322088	NM_014225.5	257	tGg/tTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11291023	11291023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	46	569	0	ENST00000361445.4:c.2738C>T	p.Ser913Phe	p.S913F	ENST00000361445	NM_004958.3	913	tCt/tTt																																																																														
TOP1	0	MSKCC	GRCh37	20	39728705	39728705	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	41	417	0	ENST00000361337.2:c.985G>T	p.Glu329Ter	p.E329*	ENST00000361337	NM_003286.2	329	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	183	1222	2	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc																																																																														
MPL	0	MSKCC	GRCh37	1	43814532	43814532	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	67	642	0	ENST00000372470.3:c.1327G>C	p.Gly443Arg	p.G443R	ENST00000372470	NM_005373.2	443	Ggg/Cgg																																																																														
MALT1	0	MSKCC	GRCh37	18	56390460	56390692	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTTTTAGACAAGGGAGTATATGGTAAGATATTTATAATGTTTGTTTTTACAATTATCCATTATTCTTTTCATTATACAAGTTAGGTTAAGAATTGAAAATCAGATAAAGATAAGGTAAACATGTTGTTGAATGGAAGAGTTTTATTTTTCTTATTAAGATGATACATTTGATCTTCATTCCATCTGAATAACTAATTAGCTTCATGTCTTTACTTTTATGTTTCCTGTTTT	TCCTTTTAGACAAGGGAGTATATGGTAAGATATTTATAATGTTTGTTTTTACAATTATCCATTATTCTTTTCATTATACAAGTTAGGTTAAGAATTGAAAATCAGATAAAGATAAGGTAAACATGTTGTTGAATGGAAGAGTTTTATTTTTCTTATTAAGATGATACATTTGATCTTCATTCCATCTGAATAACTAATTAGCTTCATGTCTTTACTTTTATGTTTCCTGTTTT	-			P-0022420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	152	549	0	ENST00000348428.3:c.1199_1222+209del		p.X400_splice	ENST00000348428	NM_006785.3	400																																																																															
KMT2B	0	MSKCC	GRCh37	19	36212673	36212673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	32	1139	2	ENST00000222270.7:c.2424G>T	p.Gln808His	p.Q808H	ENST00000222270	NM_014727.1	808	caG/caT																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	161	598	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
RECQL	0	MSKCC	GRCh37	12	21624467	21624467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	295	946	3	ENST00000421138.2:c.1562G>C	p.Gly521Ala	p.G521A	ENST00000421138		521	gGa/gCa																																																																														
CDK12	0	MSKCC	GRCh37	17	37618691	37618697	+	frameshift_variant	Frame_Shift_Del	DEL	CTAAAAG	CTAAAAG	-			P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	169	721	0	ENST00000447079.4:c.372_378del	p.Lys124AsnfsTer18	p.K124Nfs*18	ENST00000447079	NM_015083.1	123	CTAAAAGct/ct																																																																														
KIT	0	MSKCC	GRCh37	4	55594078	55594078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	191	540	0	ENST00000288135.5:c.1864G>A	p.Val622Ile	p.V622I	ENST00000288135	NM_000222.2	622	Gta/Ata																																																																														
ARID1B	0	MSKCC	GRCh37	6	157469874	157469874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	167	806	1	ENST00000346085.5:c.2668C>A	p.Pro890Thr	p.P890T	ENST00000346085	NM_020732.3	890	Cca/Aca																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226024	53226024	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	55	527	0	ENST00000375401.3:c.2825C>G	p.Ala942Gly	p.A942G	ENST00000375401	NM_004187.3	942	gCc/gGc																																																																														
KDM5C	0	MSKCC	GRCh37	X	53226022	53226022	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	56	526	0	ENST00000375401.3:c.2827del	p.Arg943GlufsTer18	p.R943Efs*18	ENST00000375401	NM_004187.3	943	Cga/ga																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399459	139399460	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0022403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	763	1110	0	ENST00000277541.6:c.4683_4684del	p.Ala1562GlyfsTer47	p.A1562Gfs*47	ENST00000277541	NM_017617.3	1561	tgTGcg/tgcg																																																																														
ATRX	0	MSKCC	GRCh37	X	76937065	76937065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022403-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	53	423	0	ENST00000373344.5:c.3683C>T	p.Pro1228Leu	p.P1228L	ENST00000373344	NM_000489.3	1228	cCt/cTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	200	709	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	188	331	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
PAK7	0	MSKCC	GRCh37	20	9561495	9561495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146341429		P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1047	347	815	1	ENST00000353224.5:c.287G>A	p.Arg96His	p.R96H	ENST00000353224	NM_177990.2	96	cGc/cAc																																																																														
SOX9	0	MSKCC	GRCh37	17	70117750	70117750	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	451	888	4	ENST00000245479.2:c.218T>A	p.Ile73Asn	p.I73N	ENST00000245479	NM_000346.3	73	aTc/aAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	514	860	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
RET	0	MSKCC	GRCh37	10	43606671	43606671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	354	765	0	ENST00000355710.3:c.1280T>C	p.Val427Ala	p.V427A	ENST00000355710	NM_020975.4	427	gTg/gCg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214791	36214791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	397	820	1	ENST00000222270.7:c.3217C>T	p.Arg1073Cys	p.R1073C	ENST00000222270	NM_014727.1	1073	Cgc/Tgc																																																																														
AXL	0	MSKCC	GRCh37	19	41765543	41765543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	455	810	3	ENST00000301178.4:c.2419C>A	p.Leu807Met	p.L807M	ENST00000301178	NM_021913.4	807	Ctg/Atg																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186502390	186502390	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	43	620	0	ENST00000323963.5:c.113T>G	p.Met38Arg	p.M38R	ENST00000323963		38	aTg/aGg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50467928	50467946	+	frameshift_variant	Frame_Shift_Del	DEL	CGTCCCCGAGCAACAGCTG	CGTCCCCGAGCAACAGCTG	AGTCC			P-0022407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	190	584	3	ENST00000331340.3:c.1163_1181delinsAGTCC	p.Ala388GlufsTer96	p.A388Efs*96	ENST00000331340	NM_006060.4	388	gCGTCCCCGAGCAACAGCTGc/gAGTCCc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347020	89347020	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	98	686	1	ENST00000301030.4:c.5930C>A	p.Ser1977Ter	p.S1977*	ENST00000301030	NM_001256183.1	1977	tCg/tAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	403	554	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																																																														
NCOA3	0	MSKCC	GRCh37	20	46256365	46256365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	333	593	1	ENST00000371998.3:c.593G>A	p.Arg198His	p.R198H	ENST00000371998		198	cGt/cAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0022385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	651	924	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																																																														
AR	0	MSKCC	GRCh37	X	66765159	66765200	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0022385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	125	307	0	ENST00000374690.3:c.198_239del	p.Gln67_Gln80del	p.Q67_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg																																																																														
FLCN	0	MSKCC	GRCh37	17	17120399	17120399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	237	543	0	ENST00000285071.4:c.1160C>G	p.Ala387Gly	p.A387G	ENST00000285071	NM_144997.5	387	gCt/gGt																																																																														
APC	0	MSKCC	GRCh37	5	112175039	112175039	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	85	258	0	ENST00000257430.4:c.3748A>T	p.Lys1250Ter	p.K1250*	ENST00000257430	NM_000038.5	1250	Aaa/Taa																																																																														
ROS1	0	MSKCC	GRCh37	6	117683819	117683819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022385-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	215	647	2	ENST00000368508.3:c.3328G>A	p.Val1110Met	p.V1110M	ENST00000368508	NM_002944.2	1110	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	370	843	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	624	833	2	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
SESN2	0	MSKCC	GRCh37	1	28601351	28601351	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	317	796	0	ENST00000253063.3:c.1036G>C	p.Asp346His	p.D346H	ENST00000253063	NM_031459.4	346	Gac/Cac																																																																														
NSD1	0	MSKCC	GRCh37	5	176721228	176721228	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	211	529	0	ENST00000439151.2:c.6859G>C	p.Asp2287His	p.D2287H	ENST00000439151	NM_022455.4	2287	Gac/Cac																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0022423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	208	960	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
FOXA1	0	MSKCC	GRCh37	14	38060745	38060745	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	77	1227	0	ENST00000250448.2:c.1244T>G	p.Leu415Arg	p.L415R	ENST00000250448	NM_004496.3	415	cTg/cGg																																																																														
REL	0	MSKCC	GRCh37	2	61148949	61148949	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	116	594	0	ENST00000295025.8:c.1139T>A	p.Val380Asp	p.V380D	ENST00000295025	NM_002908.2	380	gTt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	83	318	0	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	163	467	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
RET	0	MSKCC	GRCh37	10	43595926	43595926	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2342	263	791	0	ENST00000355710.3:c.93C>G	p.Phe31Leu	p.F31L	ENST00000355710	NM_020975.4	31	ttC/ttG																																																																														
LATS2	0	MSKCC	GRCh37	13	21562493	21562493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	12	99	1	ENST00000382592.4:c.1426G>A	p.Ala476Thr	p.A476T	ENST00000382592	NM_014572.2	476	Gcc/Acc																																																																														
MGA	0	MSKCC	GRCh37	15	42041546	42041546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	221	745	0	ENST00000219905.7:c.5741G>T	p.Ser1914Ile	p.S1914I	ENST00000219905	NM_001164273.1	1914	aGt/aTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579528	7579528	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	895	886	0	ENST00000269305.4:c.159del	p.Trp53CysfsTer70	p.W53Cfs*70	ENST00000269305	NM_001126112.2	53	tgG/tg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5240320	5240320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	331	796	1	ENST00000357368.4:c.1594C>T	p.Arg532Trp	p.R532W	ENST00000357368	NM_002850.3	532	Cgg/Tgg																																																																														
CUL3	0	MSKCC	GRCh37	2	225379420	225379420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	133	861	1	ENST00000264414.4:c.448C>A	p.Gln150Lys	p.Q150K	ENST00000264414	NM_003590.4	150	Caa/Aaa																																																																														
GNAS	0	MSKCC	GRCh37	20	57466808	57466822	+	inframe_deletion	In_Frame_Del	DEL	CGAGGACCAGCGCAA	CGAGGACCAGCGCAA	-			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1333	117	369	1	ENST00000371085.3:c.33_47del	p.Asp11_Glu15del	p.D11_E15del	ENST00000371085	NM_000516.4	9	acCGAGGACCAGCGCAAc/acc																																																																														
PLK2	0	MSKCC	GRCh37	5	57753960	57753960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	149	547	0	ENST00000274289.3:c.664G>T	p.Gly222Trp	p.G222W	ENST00000274289	NM_006622.3	222	Ggg/Tgg																																																																														
CDK12	0	MSKCC	GRCh37	17	37618878	37618878	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	107	802	0	ENST00000447079.4:c.555del	p.Glu187AsnfsTer4	p.E187Nfs*4	ENST00000447079	NM_015083.1	185	aGg/ag																																																																														
CDK12	0	MSKCC	GRCh37	17	37627388	37627388	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	122	859	0	ENST00000447079.4:c.1303del	p.Val435Ter	p.V435*	ENST00000447079	NM_015083.1	435	Gta/ta																																																																														
SF3B1	0	MSKCC	GRCh37	2	198273215	198273215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	71	800	3	ENST00000335508.6:c.995G>A	p.Ser332Asn	p.S332N	ENST00000335508	NM_012433.2	332	aGt/aAt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99454670	99454670	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	134	598	0	ENST00000268035.6:c.1589C>T	p.Ala530Val	p.A530V	ENST00000268035	NM_000875.3	530	gCa/gTa																																																																														
BAP1	0	MSKCC	GRCh37	3	52436839	52436839	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022348-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	195	849	0	ENST00000460680.1:c.1939G>T	p.Glu647Ter	p.E647*	ENST00000460680	NM_004656.3	647	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	266	716	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	382	921	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913143	32913143	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	145	624	1	ENST00000380152.3:c.4651C>T	p.Gln1551Ter	p.Q1551*	ENST00000380152		1551	Caa/Taa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604688	48604688	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	111	540	0	ENST00000342988.3:c.1510A>C	p.Ser504Arg	p.S504R	ENST00000342988	NM_005359.5	504	Agt/Cgt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348980	89348980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	98	941	0	ENST00000301030.4:c.3970T>C	p.Ser1324Pro	p.S1324P	ENST00000301030	NM_001256183.1	1324	Tct/Cct																																																																														
MEF2B	0	MSKCC	GRCh37	19	19260061	19260061	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	78	1126	0	ENST00000162023.5:c.232A>G	p.Ser78Gly	p.S78G	ENST00000162023		78	Agc/Ggc																																																																														
CARD11	0	MSKCC	GRCh37	7	2952926	2952926	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	90	900	0	ENST00000396946.4:c.3014A>G	p.Lys1005Arg	p.K1005R	ENST00000396946	NM_032415.4	1005	aAg/aGg																																																																														
AR	0	MSKCC	GRCh37	X	66863202	66863202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022349-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	164	379	0	ENST00000374690.3:c.1721C>T	p.Ala574Val	p.A574V	ENST00000374690	NM_000044.3	574	gCt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	775	930	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	264	608	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																																																														
EPHA5	0	MSKCC	GRCh37	4	66242741	66242741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	142	471	2	ENST00000273854.3:c.1831G>A	p.Ala611Thr	p.A611T	ENST00000273854	NM_004439.5	611	Gct/Act																																																																														
STAT5A	0	MSKCC	GRCh37	17	40453355	40453355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	422	1055	0	ENST00000345506.4:c.1052C>T	p.Thr351Ile	p.T351I	ENST00000345506	NM_003152.3	351	aCc/aTc																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259204	36259204	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	351	801	0	ENST00000300305.3:c.287A>T	p.Asn96Ile	p.N96I	ENST00000300305		96	aAc/aTc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168491	56168491	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	180	505	0	ENST00000399503.3:c.1447del	p.Arg483GlufsTer4	p.R483Efs*4	ENST00000399503	NM_005921.1	483	Aga/ga																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56168668	56168668	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	221	604	0	ENST00000399503.3:c.1523del	p.Pro508LeufsTer49	p.P508Lfs*49	ENST00000399503	NM_005921.1	508	Cct/ct																																																																														
SOX17	0	MSKCC	GRCh37	8	55370898	55370898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022445-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1392	505	797	0	ENST00000297316.4:c.200G>A	p.Arg67His	p.R67H	ENST00000297316	NM_022454.3	67	cGt/cAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	181	634	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
FAT1	0	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	41	766	1	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc																																																																														
AURKA	0	MSKCC	GRCh37	20	54961321	54961321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs2230743		P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	100	886	1	ENST00000312783.6:c.311C>T	p.Ser104Leu	p.S104L	ENST00000312783	NM_198436.1	104	tCg/tTg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5219962	5219962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	242	942	0	ENST00000357368.4:c.3753G>C	p.Gln1251His	p.Q1251H	ENST00000357368	NM_002850.3	1251	caG/caC																																																																														
AGO2	0	MSKCC	GRCh37	8	141549464	141549464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	80	701	0	ENST00000220592.5:c.2124G>C	p.Gln708His	p.Q708H	ENST00000220592	NM_012154.3	708	caG/caC																																																																														
RIT1	0	MSKCC	GRCh37	1	155874229	155874229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	182	861	3	ENST00000368323.3:c.302C>T	p.Ser101Phe	p.S101F	ENST00000368323	NM_006912.5	101	tCt/tTt																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054989	176054989	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	42	775	0	ENST00000367669.3:c.1064C>G	p.Ser355Ter	p.S355*	ENST00000367669	NM_022457.5	355	tCa/tGa																																																																														
ARID2	0	MSKCC	GRCh37	12	46233255	46233255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	61	623	0	ENST00000334344.6:c.1474C>A	p.Gln492Lys	p.Q492K	ENST00000334344	NM_152641.2	492	Cag/Aag																																																																														
ARID2	0	MSKCC	GRCh37	12	46233276	46233276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	55	560	0	ENST00000334344.6:c.1495C>A	p.Pro499Thr	p.P499T	ENST00000334344	NM_152641.2	499	Cca/Aca																																																																														
KMT2D	0	MSKCC	GRCh37	12	49424446	49424461	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTCAGCTGGCTCTG	CCCTCAGCTGGCTCTG	-			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	69	937	0	ENST00000301067.7:c.13762_13777del	p.Gln4588GlyfsTer24	p.Q4588Gfs*24	ENST00000301067	NM_003482.3	4588	CAGAGCCAGCTGAGGGgg/gg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427104	49427104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	75	779	0	ENST00000301067.7:c.11384C>A	p.Pro3795His	p.P3795H	ENST00000301067	NM_003482.3	3795	cCc/cAc																																																																														
MGA	0	MSKCC	GRCh37	15	42054438	42054438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	45	667	0	ENST00000219905.7:c.7622C>G	p.Ser2541Cys	p.S2541C	ENST00000219905	NM_001164273.1	2541	tCt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7579359	7579359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	290	948	0	ENST00000269305.4:c.328C>G	p.Arg110Gly	p.R110G	ENST00000269305	NM_001126112.2	110	Cgt/Ggt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602449	10602449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	132	838	0	ENST00000171111.5:c.1129G>A	p.Val377Met	p.V377M	ENST00000171111	NM_203500.1	377	Gtg/Atg																																																																														
RAF1	0	MSKCC	GRCh37	3	12626737	12626737	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	46	708	3	ENST00000251849.4:c.1552C>T	p.Arg518Ter	p.R518*	ENST00000251849	NM_002880.3	518	Cga/Tga																																																																														
DAXX	0	MSKCC	GRCh37	6	33288999	33288999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	44	724	0	ENST00000374542.5:c.553C>T	p.Arg185Trp	p.R185W	ENST00000374542	NM_001141970.1	185	Cgg/Tgg																																																																														
MET	0	MSKCC	GRCh37	7	116395524	116395524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	55	755	0	ENST00000397752.3:c.1817G>A	p.Gly606Glu	p.G606E	ENST00000397752	NM_000245.2	606	gGa/gAa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151878659	151878659	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	105	703	1	ENST00000262189.6:c.6286C>T	p.Gln2096Ter	p.Q2096*	ENST00000262189	NM_170606.2	2096	Cag/Tag																																																																														
ARID2	0	MSKCC	GRCh37	12	46233219	46233219	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0022444-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	72	637	0	ENST00000334344.6:c.1438delinsAA	p.Glu480LysfsTer3	p.E480Kfs*3	ENST00000334344	NM_152641.2	480	Gaa/AAaa																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	244	804	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
PPM1D	0	MSKCC	GRCh37	17	58701089	58701089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			348	557	703	0	ENST00000305921.3:c.680G>A	p.Arg227Gln	p.R227Q	ENST00000305921	NM_003620.3	227	cGa/cAa																																																																														
MTOR	0	MSKCC	GRCh37	1	11293499	11293499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			646	125	678	0	ENST00000361445.4:c.2377G>A	p.Gly793Ser	p.G793S	ENST00000361445	NM_004958.3	793	Ggt/Agt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123258093	123258093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	215	653	0	ENST00000358487.5:c.1588G>A	p.Asp530Asn	p.D530N	ENST00000358487	NM_000141.4	530	Gat/Aat																																																																														
TBX3	0	MSKCC	GRCh37	12	115109807	115109807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	149	770	2	ENST00000257566.3:c.2071G>A	p.Glu691Lys	p.E691K	ENST00000257566	NM_016569.3	691	Gaa/Aaa																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185198079	185198079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			648	56	468	0	ENST00000265026.3:c.2561C>T	p.Ser854Phe	p.S854F	ENST00000265026	NM_004721.4	854	tCt/tTt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55138575	55138575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021890-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			305	243	625	0	ENST00000257290.5:c.1252C>G	p.Leu418Val	p.L418V	ENST00000257290	NM_006206.4	418	Ctg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	125	801	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	32	643	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
BRD4	0	MSKCC	GRCh37	19	15354069	15354069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022342-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	41	629	0	ENST00000263377.2:c.2811G>C	p.Lys937Asn	p.K937N	ENST00000263377	NM_058243.2	937	aaG/aaC																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	398	846	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																																																														
RB1	0	MSKCC	GRCh37	13	48916774	48916775	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0022448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	75	702	1	ENST00000267163.4:c.305_306del	p.Cys102TyrfsTer7	p.C102Yfs*7	ENST00000267163	NM_000321.2	102	TGt/t																																																																														
NF1	0	MSKCC	GRCh37	17	29657420	29657421	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0022448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	429	838	0	ENST00000358273.4:c.5718_5719del	p.Phe1907TyrfsTer5	p.F1907Yfs*5	ENST00000358273	NM_001042492.2	1906	CTc/c																																																																														
EP300	0	MSKCC	GRCh37	22	41572929	41572937	+	inframe_deletion	In_Frame_Del	DEL	CATCCAGTC	CATCCAGTC	-			P-0022448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	136	826	0	ENST00000263253.7:c.5214_5222del	p.Ile1739_Ser1741del	p.I1739_S1741del	ENST00000263253	NM_001429.3	1738	tgCATCCAGTCt/tgt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589618	67589619	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAGAATATGATA			P-0022448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	54	483	0	ENST00000274335.5:c.1384_1395dup	p.Glu462_Arg465dup	p.E462_R465dup	ENST00000274335		462	cga/cGAGAATATGATAga																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32164805	32164806	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0022448-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	114	775	0	ENST00000375023.3:c.5096_5097del	p.Glu1699GlyfsTer19	p.E1699Gfs*19	ENST00000375023	NM_004557.3	1699	gAG/g																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31393154	31393154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	46	596	0	ENST00000328111.2:c.2242G>A	p.Ala748Thr	p.A748T	ENST00000328111	NM_006892.3	748	Gca/Aca																																																																														
KIT	0	MSKCC	GRCh37	4	55593576	55593604	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCACAGAAACCCATGTATGAAGTACAGTG	CCACAGAAACCCATGTATGAAGTACAGTG	-			P-0022451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	261	522	0	ENST00000288135.5:c.1648-6_1670del		p.X550_splice	ENST00000288135	NM_000222.2	550																																																																															
KMT2C	0	MSKCC	GRCh37	7	151947014	151947014	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022451-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	299	719	0	ENST00000262189.6:c.1760A>C	p.Gln587Pro	p.Q587P	ENST00000262189	NM_170606.2	587	cAa/cCa																																																																														
GNA11	0	MSKCC	GRCh37	19	3119235	3119235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			809	22	846	2	ENST00000078429.4:c.767G>A	p.Arg256Gln	p.R256Q	ENST00000078429	NM_002067.2	256	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7574012	7574022	+	frameshift_variant	Frame_Shift_Del	DEL	CGAAGCGCTCA	CGAAGCGCTCA	-			P-0020168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			379	305	847	1	ENST00000269305.4:c.1005_1015del	p.Glu336AspfsTer7	p.E336Dfs*7	ENST00000269305	NM_001126112.2	335	cgTGAGCGCTTCGag/cgag																																																																														
RTEL1	0	MSKCC	GRCh37	20	62324302	62324302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020168-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			908	100	902	1	ENST00000508582.2:c.2869G>A	p.Ala957Thr	p.A957T	ENST00000508582		957	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	104	731	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0022350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	44	469	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
CDH1	0	MSKCC	GRCh37	16	68772209	68772231	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCTCTGCCAGGAGCCGGAGCC	TGGCTCTGCCAGGAGCCGGAGCC	-			P-0022350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	78	908	0	ENST00000261769.5:c.58_80del	p.Trp20LeufsTer6	p.W20Lfs*6	ENST00000261769	NM_004360.3	20	TGGCTCTGCCAGGAGCCGGAGCCc/c																																																																														
TP53	0	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	65	861	0	ENST00000269305.4:c.392A>G	p.Asn131Ser	p.N131S	ENST00000269305	NM_001126112.2	131	aAc/aGc																																																																														
RYBP	0	MSKCC	GRCh37	3	72495726	72495726	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	47	600	0	ENST00000477973.2:c.344T>G	p.Cys116Gly	p.C116G	ENST00000477973	NM_012234.5	116	Tgt/Ggt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106545631	106545631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	50	580	0	ENST00000359195.3:c.3108G>T	p.Met1036Ile	p.M1036I	ENST00000359195	NM_002649.2	1036	atG/atT																																																																														
ABL1	0	MSKCC	GRCh37	9	133760513	133760513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	67	758	1	ENST00000318560.5:c.2836G>A	p.Ala946Thr	p.A946T	ENST00000318560	NM_005157.4	946	Gcc/Acc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858005	152858005	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	38	308	0	ENST00000406277.2:c.610G>C	p.Glu204Gln	p.E204Q	ENST00000406277	NM_152274.4	204	Gag/Cag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	132	835	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	155	935	2	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																																																														
PTPRT	0	MSKCC	GRCh37	20	41100952	41100952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	87	845	0	ENST00000373198.4:c.1404G>T	p.Glu468Asp	p.E468D	ENST00000373198	NM_133170.3	468	gaG/gaT																																																																														
POLE	0	MSKCC	GRCh37	12	133257756	133257756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	75	969	0	ENST00000320574.5:c.172G>A	p.Glu58Lys	p.E58K	ENST00000320574	NM_006231.2	58	Gag/Aag																																																																														
SLX4	0	MSKCC	GRCh37	16	3639376	3639376	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	62	995	0	ENST00000294008.3:c.4263T>G	p.Ile1421Met	p.I1421M	ENST00000294008	NM_032444.2	1421	atT/atG																																																																														
CREBBP	0	MSKCC	GRCh37	16	3777729	3777729	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	87	1138	0	ENST00000262367.5:c.7319A>T	p.Glu2440Val	p.E2440V	ENST00000262367	NM_004380.2	2440	gAg/gTg																																																																														
TET2	0	MSKCC	GRCh37	4	106164773	106164773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	66	708	0	ENST00000380013.4:c.3641G>T	p.Arg1214Leu	p.R1214L	ENST00000380013	NM_001127208.2	1214	cGg/cTg																																																																														
TERT	0	MSKCC	GRCh37	5	1295305	1295305	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	85	778	0				ENST00000310581	NM_198253.2																																																																																
MSH3	0	MSKCC	GRCh37	5	79974749	79974749	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	129	725	1	ENST00000265081.6:c.1177G>T	p.Val393Leu	p.V393L	ENST00000265081	NM_002439.4	393	Gtg/Ttg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32187966	32187967	+	missense_variant	Missense_Mutation	DNP	GG	GG	TC			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	132	1014	3	ENST00000375023.3:c.1254_1255delinsGA	p.Cys418_Leu419delinsTrpMet	p.C418_L419delinsWM	ENST00000375023	NM_004557.3	418	tgCCtg/tgGAtg																																																																														
AR	0	MSKCC	GRCh37	X	66943526	66943526	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	93	632	0	ENST00000374690.3:c.2608-2A>T		p.X870_splice	ENST00000374690	NM_000044.3	870																																																																															
MED12	0	MSKCC	GRCh37	X	70348452	70348452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022453-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	154	740	0	ENST00000374080.3:c.3359G>T	p.Ser1120Ile	p.S1120I	ENST00000374080		1120	aGt/aTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	386	863	16	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga																																																																														
SPEN	0	MSKCC	GRCh37	1	16242647	16242647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	296	642	3	ENST00000375759.3:c.1268G>A	p.Arg423His	p.R423H	ENST00000375759	NM_015001.2	423	cGc/cAc																																																																														
CDH1	0	MSKCC	GRCh37	16	68772211	68772211	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	426	770	2	ENST00000261769.5:c.60G>A	p.Trp20Ter	p.W20*	ENST00000261769	NM_004360.3	20	tgG/tgA																																																																														
CDH1	0	MSKCC	GRCh37	16	68772215	68772215	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	441	818	0	ENST00000261769.5:c.64T>A	p.Cys22Ser	p.C22S	ENST00000261769	NM_004360.3	22	Tgc/Agc																																																																														
BAP1	0	MSKCC	GRCh37	3	52439125	52439125	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	325	667	5	ENST00000460680.1:c.1116+1G>A		p.X372_splice	ENST00000460680	NM_004656.3	372																																																																															
TERT	0	MSKCC	GRCh37	5	1293771	1293771	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	429	914	7	ENST00000310581.5:c.1230G>C	p.Lys410Asn	p.K410N	ENST00000310581	NM_198253.2	410	aaG/aaC																																																																														
HGF	0	MSKCC	GRCh37	7	81358928	81358928	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	278	588	2	ENST00000222390.5:c.1033A>T	p.Lys345Ter	p.K345*	ENST00000222390	NM_000601.4	345	Aag/Tag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971020	21971020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	257	575	3	ENST00000304494.5:c.338T>C	p.Leu113Pro	p.L113P	ENST00000304494	NM_000077.4	113	cTg/cCg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971020	21971020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	257	575	3	ENST00000304494.5:c.338T>C	p.Leu113Pro	p.L113P	ENST00000304494	NM_000077.4	113	cTg/cCg																																																																														
RAD54L	0	MSKCC	GRCh37	1	46714238	46714243	+	inframe_deletion	In_Frame_Del	DEL	TGTGAT	TGTGAT	-			P-0014524-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			471	65	575	0	ENST00000371975.4:c.58_63del	p.Cys20_Asp21del	p.C20_D21del	ENST00000371975	NM_003579.3	20	TGTGAT/-																																																																														
ATM	0	MSKCC	GRCh37	11	108202197	108202197	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014524-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			243	35	516	1	ENST00000278616.4:c.7542T>A	p.Tyr2514Ter	p.Y2514*	ENST00000278616	NM_000051.3	2514	taT/taA																																																																														
RAF1	0	MSKCC	GRCh37	3	12645681	12645681	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014524-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			213	21	255	0	ENST00000251849.4:c.788T>A	p.Val263Asp	p.V263D	ENST00000251849	NM_002880.3	263	gTc/gAc																																																																														
MET	0	MSKCC	GRCh37	7	116412046	116412046	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0014524-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			553	126	961	0	ENST00000397752.3:c.3028+3A>G		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																																																															
MAP3K13	0	MSKCC	GRCh37	3	185146610	185146610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014524-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			482	34	619	2	ENST00000265026.3:c.241G>C	p.Glu81Gln	p.E81Q	ENST00000265026	NM_004721.4	81	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	161	721	1	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16265285	16265285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	54	847	2	ENST00000375759.3:c.10777G>A	p.Glu3593Lys	p.E3593K	ENST00000375759	NM_015001.2	3593	Gag/Aag																																																																														
PGR	0	MSKCC	GRCh37	11	100998925	100998925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022154-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	41	618	0	ENST00000325455.5:c.877C>A	p.Arg293Ser	p.R293S	ENST00000325455	NM_001202474.3	293	Cgc/Agc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0022288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	124	591	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	135	385	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
PGR	0	MSKCC	GRCh37	11	100999656	100999656	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	64	1050	0	ENST00000325455.5:c.146C>G	p.Ser49Trp	p.S49W	ENST00000325455	NM_001202474.3	49	tCg/tGg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118307526	118307526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	58	768	0	ENST00000534358.1:c.299C>T	p.Ser100Phe	p.S100F	ENST00000534358	NM_005933.3	100	tCt/tTt																																																																														
TBX3	0	MSKCC	GRCh37	12	115112608	115112608	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	57	843	0	ENST00000257566.3:c.1132G>T	p.Glu378Ter	p.E378*	ENST00000257566	NM_016569.3	378	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577124	7577126	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0022288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	216	724	1	ENST00000269305.4:c.812_814del	p.Glu271del	p.E271del	ENST00000269305	NM_001126112.2	271	gAGGtg/gtg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94068079	94068079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	33	435	0	ENST00000369303.4:c.883C>T	p.Arg295Cys	p.R295C	ENST00000369303	NM_004440.3	295	Cgt/Tgt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0022365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	71	607	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	161	744	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
INPP4A	0	MSKCC	GRCh37	2	99155357	99155357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	40	443	2	ENST00000074304.5:c.583G>T	p.Val195Phe	p.V195F	ENST00000074304	NM_001134224.1	195	Gtt/Ttt																																																																														
PAK7	0	MSKCC	GRCh37	20	9520152	9520152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	39	504	0	ENST00000353224.5:c.2117C>A	p.Pro706Gln	p.P706Q	ENST00000353224	NM_177990.2	706	cCg/cAg																																																																														
MGA	0	MSKCC	GRCh37	15	42041800	42041800	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	41	502	2	ENST00000219905.7:c.5995G>T	p.Glu1999Ter	p.E1999*	ENST00000219905	NM_001164273.1	1999	Gag/Tag																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741681	17741681	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	66	601	0	ENST00000250003.3:c.352G>T	p.Glu118Ter	p.E118*	ENST00000250003	NM_002478.4	118	Gag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108141986	108141986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	60	501	2	ENST00000278616.4:c.2930G>T	p.Cys977Phe	p.C977F	ENST00000278616	NM_000051.3	977	tGt/tTt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72831923	72831923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	87	913	0	ENST00000268489.5:c.4658C>T	p.Ser1553Phe	p.S1553F	ENST00000268489	NM_006885.3	1553	tCt/tTt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41244877	41244877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	58	686	0	ENST00000357654.3:c.2671T>A	p.Ser891Thr	p.S891T	ENST00000357654	NM_007294.3	891	Tcc/Acc																																																																														
DNMT1	0	MSKCC	GRCh37	19	10247857	10247857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	57	873	0	ENST00000340748.4:c.4345G>T	p.Gly1449Cys	p.G1449C	ENST00000340748		1449	Ggc/Tgc																																																																														
KMT2B	0	MSKCC	GRCh37	19	36213999	36213999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	71	850	1	ENST00000222270.7:c.2825G>T	p.Gly942Val	p.G942V	ENST00000222270	NM_014727.1	942	gGa/gTa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40713353	40713353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	66	764	0	ENST00000373198.4:c.4162G>C	p.Gly1388Arg	p.G1388R	ENST00000373198	NM_133170.3	1388	Ggg/Cgg																																																																														
SETD2	0	MSKCC	GRCh37	3	47164234	47164234	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	49	474	0	ENST00000409792.3:c.1892A>T	p.Asp631Val	p.D631V	ENST00000409792	NM_014159.6	631	gAt/gTt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31409357	31409357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	110	595	0	ENST00000344624.3:c.3750A>T	p.Lys1250Asn	p.K1250N	ENST00000344624		1250	aaA/aaT																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149501467	149501467	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	65	826	2	ENST00000261799.4:c.2320C>A	p.Pro774Thr	p.P774T	ENST00000261799	NM_002609.3	774	Cct/Act																																																																														
MET	0	MSKCC	GRCh37	7	116339827	116339827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	40	588	1	ENST00000397752.3:c.689C>T	p.Thr230Met	p.T230M	ENST00000397752	NM_000245.2	230	aCg/aTg																																																																														
ABL1	0	MSKCC	GRCh37	9	133760450	133760450	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	45	676	1	ENST00000318560.5:c.2773G>T	p.Glu925Ter	p.E925*	ENST00000318560	NM_005157.4	925	Gag/Tag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022130-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	318	721	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056437	26056437	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	180	313	0	ENST00000343677.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000343677	NM_005319.3	74	Gag/Cag																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	336	720	1	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																														
KDM5A	0	MSKCC	GRCh37	12	472205	472205	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2753	169	663	0	ENST00000399788.2:c.596C>G	p.Thr199Ser	p.T199S	ENST00000399788	NM_001042603.1	199	aCt/aGt																																																																														
MST1R	0	MSKCC	GRCh37	3	49940930	49940930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	103	658	2	ENST00000296474.3:c.113G>A	p.Arg38His	p.R38H	ENST00000296474	NM_002447.2	38	cGc/cAc																																																																														
GSK3B	0	MSKCC	GRCh37	3	119624607	119624607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	262	583	0	ENST00000316626.5:c.808A>G	p.Ile270Val	p.I270V	ENST00000316626		270	Atc/Gtc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134911534	134911534	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	132	663	0	ENST00000398015.3:c.1999A>T	p.Ser667Cys	p.S667C	ENST00000398015	NM_004441.4	667	Agt/Tgt																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250727	26250727	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	134	510	0	ENST00000446824.2:c.107T>G	p.Val36Gly	p.V36G	ENST00000446824	NM_021018.2	36	gTg/gGg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971057	21971118	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGT	CGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGT	-			P-0022003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	84	435	0	ENST00000304494.5:c.240_301del	p.Pro81GlyfsTer18	p.P81Gfs*18	ENST00000304494	NM_000077.4	80	cgACCCGTGCACGACGCTGCCCGGGAGGGCTTCCTGGACACGCTGGTGGTGCTGCACCGGGCCGgg/cggg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971057	21971118	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGT	CGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGT	-			P-0022003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	84	435	0	ENST00000304494.5:c.240_301del	p.Pro81GlyfsTer18	p.P81Gfs*18	ENST00000304494	NM_000077.4	80	cgACCCGTGCACGACGCTGCCCGGGAGGGCTTCCTGGACACGCTGGTGGTGCTGCACCGGGCCGgg/cggg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971057	21971118	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGT	CGGCCCGGTGCAGCACCACCAGCGTGTCCAGGAAGCCCTCCCGGGCAGCGTCGTGCACGGGT	-			P-0022003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	84	435	0	ENST00000304494.5:c.240_301del	p.Pro81GlyfsTer18	p.P81Gfs*18	ENST00000304494	NM_000077.4	80	cgACCCGTGCACGACGCTGCCCGGGAGGGCTTCCTGGACACGCTGGTGGTGCTGCACCGGGCCGgg/cggg																																																																														
KLF4	0	MSKCC	GRCh37	9	110249941	110249941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	101	494	0	ENST00000374672.4:c.734C>T	p.Pro245Leu	p.P245L	ENST00000374672	NM_004235.4	245	cCg/cTg																																																																														
AR	0	MSKCC	GRCh37	X	66941704	66941704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	163	724	0	ENST00000374690.3:c.2348G>T	p.Ser783Ile	p.S783I	ENST00000374690	NM_000044.3	783	aGc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	140	650	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	95	657	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67477089	67477103	+	inframe_deletion	In_Frame_Del	DEL	TCGGAGGGGAGGTCT	TCGGAGGGGAGGTCT	-			P-0022085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	182	496	0	ENST00000327367.4:c.899_913del	p.Gly300_Phe304del	p.G300_F304del	ENST00000327367	NM_005902.3	299	aTCGGAGGGGAGGTCTtc/atc																																																																														
ERF	0	MSKCC	GRCh37	19	42753597	42753597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	139	790	1	ENST00000222329.4:c.667G>T	p.Ala223Ser	p.A223S	ENST00000222329	NM_006494.2	223	Gcc/Tcc																																																																														
GATA2	0	MSKCC	GRCh37	3	128200670	128200670	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	99	677	0	ENST00000341105.2:c.1135C>G	p.Leu379Val	p.L379V	ENST00000341105	NM_032638.4	379	Ctg/Gtg																																																																														
ATR	0	MSKCC	GRCh37	3	142268984	142268984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	94	422	0	ENST00000350721.4:c.2966G>A	p.Arg989His	p.R989H	ENST00000350721	NM_001184.3	989	cGt/cAt																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	47	1074	1	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																														
MAX	0	MSKCC	GRCh37	14	65560494	65560494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022129-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	30	683	1	ENST00000358664.4:c.103C>T	p.Arg35Cys	p.R35C	ENST00000358664	NM_002382.4	35	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	190	736	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	70	385	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	70	385	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0022144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	145	638	0	ENST00000300305.3:c.366_367dupGG	p.Asp123GlyfsTer11	p.D123Gfs*11	ENST00000300305		123	gat/gGGat																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2489852	2489852	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	186	913	0	ENST00000355716.4:c.249C>A	p.Tyr83Ter	p.Y83*	ENST00000355716	NM_003820.2	83	taC/taA																																																																														
KDM5A	0	MSKCC	GRCh37	12	443419	443419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	169	478	0	ENST00000399788.2:c.1478A>G	p.Asn493Ser	p.N493S	ENST00000399788	NM_001042603.1	493	aAc/aGc																																																																														
CTCF	0	MSKCC	GRCh37	16	67644882	67644882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	32	551	0	ENST00000264010.4:c.147G>T	p.Glu49Asp	p.E49D	ENST00000264010	NM_006565.3	49	gaG/gaT																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346565	89346565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	66	644	0	ENST00000301030.4:c.6385G>A	p.Asp2129Asn	p.D2129N	ENST00000301030	NM_001256183.1	2129	Gac/Aac																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89357487	89357487	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022144-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	83	851	0	ENST00000301030.4:c.331C>G	p.Leu111Val	p.L111V	ENST00000301030	NM_001256183.1	111	Ctc/Gtc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	239	651	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	201	451	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	80	422	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	26	391	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
APC	0	MSKCC	GRCh37	5	112163696	112163697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	67	453	0	ENST00000257430.4:c.1620dupA	p.Gln541ThrfsTer19	p.Q541Tfs*19	ENST00000257430	NM_000038.5	540	tta/ttAa																																																																														
MED12	0	MSKCC	GRCh37	X	70347217	70347217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	255	351	0	ENST00000374080.3:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000374080		961	Cgg/Tgg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67473704	67473704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	171	674	0	ENST00000327367.4:c.784G>A	p.Asp262Asn	p.D262N	ENST00000327367	NM_005902.3	262	Gac/Aac																																																																														
SMYD3	0	MSKCC	GRCh37	1	246078897	246078897	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145023938		P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	193	698	2	ENST00000388985.4:c.748C>T	p.Arg250Trp	p.R250W	ENST00000388985		250	Cgg/Tgg																																																																														
STAT5B	0	MSKCC	GRCh37	17	40375464	40375464	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	138	832	0	ENST00000293328.3:c.486A>T	p.Leu162Phe	p.L162F	ENST00000293328	NM_012448.3	162	ttA/ttT																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212611	36212611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	231	959	0	ENST00000222270.7:c.2362G>T	p.Val788Leu	p.V788L	ENST00000222270	NM_014727.1	788	Gta/Tta																																																																														
KMT2B	0	MSKCC	GRCh37	19	36220868	36220868	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	22	181	0	ENST00000222270.7:c.4918C>T	p.Arg1640Cys	p.R1640C	ENST00000222270	NM_014727.1	1640	Cgc/Tgc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			835	277	746	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			890	283	853	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			737	82	598	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																																																														
B2M	0	MSKCC	GRCh37	15	45003763	45003763	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010000-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			829	111	694	0	ENST00000558401.1:c.19T>G	p.Leu7Val	p.L7V	ENST00000558401	NM_004048.2	7	Tta/Gta																																																																														
TSC1	0	MSKCC	GRCh37	9	135797337	135797337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	199	440	1	ENST00000298552.3:c.532G>A	p.Val178Ile	p.V178I	ENST00000298552	NM_001162426.1	178	Gtc/Atc																																																																														
TET2	0	MSKCC	GRCh37	4	106196424	106196424	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	178	635	1	ENST00000380013.4:c.4757C>A	p.Ser1586Ter	p.S1586*	ENST00000380013	NM_001127208.2	1586	tCa/tAa																																																																														
AR	0	MSKCC	GRCh37	X	66943606	66943606	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	288	378	0	ENST00000374690.3:c.2686A>G	p.Met896Val	p.M896V	ENST00000374690	NM_000044.3	896	Atg/Gtg																																																																														
ATRX	0	MSKCC	GRCh37	X	76763873	76763873	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200478641		P-0022179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	91	389	0	ENST00000373344.5:c.7435A>G	p.Met2479Val	p.M2479V	ENST00000373344	NM_000489.3	2479	Atg/Gtg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	8	709	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PTEN	0	MSKCC	GRCh37	10	89690811	89690811	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	136	508	0	ENST00000371953.3:c.220del	p.Arg74AspfsTer25	p.R74Dfs*25	ENST00000371953	NM_000314.4	73	gAa/ga																																																																														
RB1	0	MSKCC	GRCh37	13	48934254	48934254	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	49	697	0	ENST00000267163.4:c.709G>T	p.Glu237Ter	p.E237*	ENST00000267163	NM_000321.2	237	Gaa/Taa																																																																														
TSC2	0	MSKCC	GRCh37	16	2134629	2134629	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	145	892	1	ENST00000219476.3:c.4406C>A	p.Ser1469Ter	p.S1469*	ENST00000219476	NM_000548.3	1469	tCa/tAa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212652774	212652774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	27	542	0	ENST00000342788.4:c.532G>A	p.Val178Met	p.V178M	ENST00000342788	NM_005235.2	178	Gtg/Atg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134825394	134825394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	150	716	5	ENST00000398015.3:c.910C>T	p.Arg304Trp	p.R304W	ENST00000398015	NM_004441.4	304	Cgg/Tgg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	66	350	0				ENST00000310581	NM_198253.2																																																																																
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	213	748	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27099093	27099093	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	195	670	0	ENST00000324856.7:c.3509A>C	p.His1170Pro	p.H1170P	ENST00000324856	NM_006015.4	1170	cAc/cCc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	325	714	1	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																																																														
BRAF	0	MSKCC	GRCh37	7	140453148	140453148	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	112	496	0	ENST00000288602.6:c.1787G>T	p.Gly596Val	p.G596V	ENST00000288602	NM_004333.4	596	gGt/gTt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143067050	143067050	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	134	614	0	ENST00000262992.4:c.1663A>C	p.Asn555His	p.N555H	ENST00000262992	NM_001101669.1	555	Aac/Cac																																																																														
DROSHA	0	MSKCC	GRCh37	5	31435899	31435899	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	38	506	0	ENST00000344624.3:c.3015G>T	p.Gln1005His	p.Q1005H	ENST00000344624		1005	caG/caT																																																																														
FGF19	0	MSKCC	GRCh37	11	69514290	69514290	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	353	729	2	ENST00000294312.3:c.391T>A	p.Tyr131Asn	p.Y131N	ENST00000294312	NM_005117.2	131	Tac/Aac																																																																														
KMT2A	0	MSKCC	GRCh37	11	118352490	118352490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	159	583	0	ENST00000534358.1:c.3695G>T	p.Ser1232Ile	p.S1232I	ENST00000534358	NM_005933.3	1232	aGt/aTt																																																																														
H3F3C	0	MSKCC	GRCh37	12	31944913	31944913	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	134	258	0	ENST00000340398.3:c.188G>C	p.Arg63Pro	p.R63P	ENST00000340398	NM_001013699.2	63	cGg/cCg																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281237	49281237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	161	781	1	ENST00000282018.3:c.284C>A	p.Ala95Asp	p.A95D	ENST00000282018	NM_020377.2	95	gCt/gAt																																																																														
MAX	0	MSKCC	GRCh37	14	65560425	65560425	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	65	348	0	ENST00000358664.4:c.171+1G>T		p.X57_splice	ENST00000358664	NM_002382.4	57																																																																															
GRIN2A	0	MSKCC	GRCh37	16	9943819	9943819	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	112	354	0	ENST00000330684.3:c.1123-1G>C		p.X375_splice	ENST00000330684	NM_001134407.1	375																																																																															
ZFHX3	0	MSKCC	GRCh37	16	72991761	72991761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	127	417	0	ENST00000268489.5:c.2284G>T	p.Gly762Trp	p.G762W	ENST00000268489	NM_006885.3	762	Ggg/Tgg																																																																														
RAD51D	0	MSKCC	GRCh37	17	33430338	33430338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	220	634	0	ENST00000335858.7:c.337G>T	p.Ala113Ser	p.A113S	ENST00000335858	NM_133629.2	113	Gcc/Tcc																																																																														
HOXB13	0	MSKCC	GRCh37	17	46804336	46804336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	203	600	0	ENST00000290295.7:c.671G>T	p.Ser224Ile	p.S224I	ENST00000290295	NM_006361.5	224	aGc/aTc																																																																														
YES1	0	MSKCC	GRCh37	18	756628	756628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	126	582	0	ENST00000314574.4:c.200G>T	p.Gly67Val	p.G67V	ENST00000314574	NM_005433.3	67	gGg/gTg																																																																														
JAK3	0	MSKCC	GRCh37	19	17955123	17955123	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	267	706	0	ENST00000458235.1:c.104C>G	p.Pro35Arg	p.P35R	ENST00000458235	NM_000215.3	35	cCc/cGc																																																																														
PMS1	0	MSKCC	GRCh37	2	190738269	190738270	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	152	398	0	ENST00000441310.2:c.2521_2522insA	p.Cys841Ter	p.C841*	ENST00000441310	NM_000534.4	841	tgt/tAgt																																																																														
IRS1	0	MSKCC	GRCh37	2	227660217	227660217	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	218	767	0	ENST00000305123.5:c.3238A>C	p.Asn1080His	p.N1080H	ENST00000305123	NM_005544.2	1080	Aac/Cac																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727174	40727175	+	missense_variant	Missense_Mutation	DNP	CG	CG	AC			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	200	567	1	ENST00000373198.4:c.3789_3790delinsGT	p.Ala1264Ser	p.A1264S	ENST00000373198	NM_133170.3	1263	gcCGcc/gcGTcc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89528582	89528582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	23	399	0	ENST00000336596.2:c.2882C>A	p.Pro961Gln	p.P961Q	ENST00000336596	NM_005233.5	961	cCa/cAa																																																																														
INPP4B	0	MSKCC	GRCh37	4	143094963	143094963	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	46	437	2	ENST00000262992.4:c.1182-1G>T		p.X394_splice	ENST00000262992	NM_001101669.1	394																																																																															
FAT1	0	MSKCC	GRCh37	4	187521269	187521269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	175	663	1	ENST00000441802.2:c.11886G>T	p.Arg3962Ser	p.R3962S	ENST00000441802	NM_005245.3	3962	agG/agT																																																																														
FLT4	0	MSKCC	GRCh37	5	180052955	180052955	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	222	802	0	ENST00000261937.6:c.1335del	p.Cys445Ter	p.C445*	ENST00000261937	NM_182925.4	445	tgC/tg																																																																														
CARD11	0	MSKCC	GRCh37	7	2962826	2962827	+	missense_variant	Missense_Mutation	DNP	CG	CG	GA			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	213	639	2	ENST00000396946.4:c.2081_2082delinsTC	p.Ser694Phe	p.S694F	ENST00000396946	NM_032415.4	694	tCG/tTC																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521418	8521418	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	273	736	0	ENST00000356435.5:c.820G>C	p.Glu274Gln	p.E274Q	ENST00000356435		274	Gaa/Caa																																																																														
PAX5	0	MSKCC	GRCh37	9	37020693	37020693	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	216	549	0	ENST00000358127.4:c.152C>A	p.Pro51His	p.P51H	ENST00000358127	NM_001280556.1	51	cCc/cAc																																																																														
ATRX	0	MSKCC	GRCh37	X	76938389	76938389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	31	383	2	ENST00000373344.5:c.2359G>T	p.Gly787Cys	p.G787C	ENST00000373344	NM_000489.3	787	Ggc/Tgc																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	240	623	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	20	135	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																																																														
APC	0	MSKCC	GRCh37	5	112174691	112174691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	44	363	0	ENST00000257430.4:c.3400G>A	p.Asp1134Asn	p.D1134N	ENST00000257430	NM_000038.5	1134	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	281	698	0	ENST00000269305.4:c.776A>T	p.Asp259Val	p.D259V	ENST00000269305	NM_001126112.2	259	gAc/gTc																																																																														
IL7R	0	MSKCC	GRCh37	5	35873630	35873630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	80	341	0	ENST00000303115.3:c.586C>T	p.Gln196Ter	p.Q196*	ENST00000303115	NM_002185.3	196	Caa/Taa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	218	416	0				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0022256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	127	549	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
CTCF	0	MSKCC	GRCh37	16	67644754	67644754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	196	531	1	ENST00000264010.4:c.19G>A	p.Glu7Lys	p.E7K	ENST00000264010	NM_006565.3	7	Gaa/Aaa																																																																														
TBX3	0	MSKCC	GRCh37	12	115117319	115117319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	163	447	0	ENST00000257566.3:c.855G>C	p.Gln285His	p.Q285H	ENST00000257566	NM_016569.3	285	caG/caC																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446160	49446160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	238	685	1	ENST00000301067.7:c.1306G>A	p.Glu436Lys	p.E436K	ENST00000301067	NM_003482.3	436	Gag/Aag																																																																														
MGA	0	MSKCC	GRCh37	15	42052574	42052574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	217	500	0	ENST00000219905.7:c.7245G>C	p.Gln2415His	p.Q2415H	ENST00000219905	NM_001164273.1	2415	caG/caC																																																																														
NF1	0	MSKCC	GRCh37	17	29546098	29546098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	123	521	0	ENST00000358273.4:c.1603C>G	p.Gln535Glu	p.Q535E	ENST00000358273	NM_001042492.2	535	Cag/Gag																																																																														
FAT1	0	MSKCC	GRCh37	4	187540680	187540680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	38	462	1	ENST00000441802.2:c.7060C>T	p.Arg2354Trp	p.R2354W	ENST00000441802	NM_005245.3	2354	Cgg/Tgg																																																																														
ROS1	0	MSKCC	GRCh37	6	117658409	117658409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	255	656	0	ENST00000368508.3:c.5174A>G	p.Tyr1725Cys	p.Y1725C	ENST00000368508	NM_002944.2	1725	tAt/tGt																																																																														
RECQL4	0	MSKCC	GRCh37	8	145738032	145738032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	41	746	0	ENST00000428558.2:c.2878G>A	p.Ala960Thr	p.A960T	ENST00000428558	NM_004260.3	960	Gcc/Acc																																																																														
TSC1	0	MSKCC	GRCh37	9	135781140	135781140	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	229	608	1	ENST00000298552.3:c.1825G>T	p.Glu609Ter	p.E609*	ENST00000298552	NM_001162426.1	609	Gag/Tag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44928846	44928846	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			47	148	198	0	ENST00000377967.4:c.1946C>G	p.Ser649Ter	p.S649*	ENST00000377967	NM_021140.2	649	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	368	794	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
APC	0	MSKCC	GRCh37	5	112175163	112175170	+	frameshift_variant	Frame_Shift_Del	DEL	AGACGACA	AGACGACA	-			P-0022150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	73	309	0	ENST00000257430.4:c.3872_3879del	p.Gln1291ProfsTer7	p.Q1291Pfs*7	ENST00000257430	NM_000038.5	1291	cAGACGACA/c																																																																														
ARAF	0	MSKCC	GRCh37	X	47426498	47426498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	27	430	0	ENST00000377045.4:c.841C>T	p.Arg281Trp	p.R281W	ENST00000377045	NM_001654.4	281	Cgg/Tgg																																																																														
STAG2	0	MSKCC	GRCh37	X	123181348	123181348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	40	148	1	ENST00000218089.9:c.812G>A	p.Arg271Gln	p.R271Q	ENST00000218089	NM_001042749.1	271	cGg/cAg																																																																														
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	205	778	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																																																														
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0022073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	251	928	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952074	178952075	+	missense_variant	Missense_Mutation	DNP	GA	GA	TC			P-0022073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	1784	569	1	ENST00000263967.3:c.3129_3130inv	p.Met1043_Asn1044delinsIleHis	p.M1043_N1044delinsIH	ENST00000263967	NM_006218.2	1043	atGAat/atTCat																																																																														
PGR	0	MSKCC	GRCh37	11	100999801	100999801	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0022073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	40	699	0	ENST00000325455.5:c.1A>C	p.Met1?	p.M1?	ENST00000325455	NM_001202474.3	1	Atg/Ctg																																																																														
CDH1	0	MSKCC	GRCh37	16	68863687	68863688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	45	434	0	ENST00000261769.5:c.2430dup	p.Ile811TyrfsTer2	p.I811Yfs*2	ENST00000261769	NM_004360.3	809	aat/aaTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579556	7579565	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAAATCAT	ATCAAATCAT	-			P-0022073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	193	908	0	ENST00000269305.4:c.122_131del	p.Asp41GlyfsTer79	p.D41Gfs*79	ENST00000269305	NM_001126112.2	41	gATGATTTGATg/gg																																																																														
BRD4	0	MSKCC	GRCh37	19	15375320	15375320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	57	868	0	ENST00000263377.2:c.1107C>G	p.His369Gln	p.H369Q	ENST00000263377	NM_058243.2	369	caC/caG																																																																														
EPHB1	0	MSKCC	GRCh37	3	134898785	134898785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	75	685	0	ENST00000398015.3:c.1843G>C	p.Asp615His	p.D615H	ENST00000398015	NM_004441.4	615	Gat/Cat																																																																														
CARD11	0	MSKCC	GRCh37	7	2958124	2958124	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	84	843	0	ENST00000396946.4:c.2607+1G>A		p.X869_splice	ENST00000396946	NM_032415.4	869																																																																															
MAP3K1	0	MSKCC	GRCh37	5	56160672	56160679	+	frameshift_variant	Frame_Shift_Del	DEL	CTGTACTT	CTGTACTT	A			P-0022073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	121	575	0	ENST00000399503.3:c.946_953delinsA	p.Leu316AsnfsTer5	p.L316Nfs*5	ENST00000399503	NM_005921.1	316	CTGTACTTa/Aa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0022047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	110	712	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350279	89350279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	211	921	1	ENST00000301030.4:c.2671G>A	p.Asp891Asn	p.D891N	ENST00000301030	NM_001256183.1	891	Gac/Aac																																																																														
STK11	0	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	172	740	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																														
CBL	0	MSKCC	GRCh37	11	119156046	119156046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	147	750	1	ENST00000264033.4:c.1711G>A	p.Asp571Asn	p.D571N	ENST00000264033	NM_005188.3	571	Gac/Aac																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259631	89259631	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	77	423	0	ENST00000336596.2:c.775T>A	p.Cys259Ser	p.C259S	ENST00000336596	NM_005233.5	259	Tgc/Agc																																																																														
TBX3	0	MSKCC	GRCh37	12	115120854	115120854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	56	448	1	ENST00000257566.3:c.152C>T	p.Ala51Val	p.A51V	ENST00000257566	NM_016569.3	51	gCg/gTg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32907073	32907073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	52	569	0	ENST00000380152.3:c.1458G>T	p.Gln486His	p.Q486H	ENST00000380152		486	caG/caT																																																																														
B2M	0	MSKCC	GRCh37	15	45003764	45003765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	75	603	0	ENST00000558401.1:c.20_21insC	p.Leu7PhefsTer50	p.L7Ffs*50	ENST00000558401	NM_004048.2	7	tta/ttCa																																																																														
AXIN2	0	MSKCC	GRCh37	17	63533704	63533704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	113	561	0	ENST00000307078.5:c.1450G>T	p.Gly484Cys	p.G484C	ENST00000307078	NM_004655.3	484	Ggt/Tgt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10597407	10597409	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0022047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	217	829	0	ENST00000171111.5:c.1794_1796del	p.Ser599del	p.S599del	ENST00000171111	NM_203500.1	598	acATCg/acg																																																																														
INPP4A	0	MSKCC	GRCh37	2	99137153	99137153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	52	447	0	ENST00000074304.5:c.110A>T	p.Asn37Ile	p.N37I	ENST00000074304	NM_001134224.1	37	aAt/aTt																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858234	27858234	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	75	577	0	ENST00000359303.2:c.337A>G	p.Ile113Val	p.I113V	ENST00000359303	NM_003535.2	113	Att/Gtt																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32188055	32188055	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	145	695	0	ENST00000375023.3:c.1166T>A	p.Leu389Gln	p.L389Q	ENST00000375023	NM_004557.3	389	cTg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	159	721	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	208	826	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0022041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	64	560	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508173	106508173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	46	340	1	ENST00000359195.3:c.167C>T	p.Thr56Met	p.T56M	ENST00000359195	NM_002649.2	56	aCg/aTg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971108	21971109	+	missense_variant	Missense_Mutation	DNP	CG	CG	GT			P-0022041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	61	583	1	ENST00000304494.5:c.249_250delinsAC	p.His83_Asp84delinsGlnHis	p.H83_D84delinsQH	ENST00000304494	NM_000077.4	83	caCGac/caACac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971108	21971109	+	missense_variant	Missense_Mutation	DNP	CG	CG	GT			P-0022041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	61	583	1	ENST00000304494.5:c.249_250delinsAC	p.His83_Asp84delinsGlnHis	p.H83_D84delinsQH	ENST00000304494	NM_000077.4	83	caCGac/caACac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971108	21971109	+	missense_variant	Missense_Mutation	DNP	CG	CG	GT			P-0022041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	61	583	1	ENST00000304494.5:c.249_250delinsAC	p.His83_Asp84delinsGlnHis	p.H83_D84delinsQH	ENST00000304494	NM_000077.4	83	caCGac/caACac																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0022124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			90	300	524	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
KMT2C	0	MSKCC	GRCh37	7	152012280	152012280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	255	733	0	ENST00000262189.6:c.533A>G	p.Asn178Ser	p.N178S	ENST00000262189	NM_170606.2	178	aAt/aGt																																																																														
TSC1	0	MSKCC	GRCh37	9	135798773	135798773	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022124-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	139	424	0	ENST00000298552.3:c.470T>A	p.Ile157Asn	p.I157N	ENST00000298552	NM_001162426.1	157	aTt/aAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	82	856	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	93	704	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MTOR	0	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	125	805	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt																																																																														
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	186	679	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	62	525	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	95	796	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																																																														
RBM10	0	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	336	419	1	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga																																																																														
HLA-A	0	MSKCC	GRCh37	6	29910617	29910617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	97	842	0	ENST00000376809.5:c.157G>A	p.Asp53Asn	p.D53N	ENST00000376809	NM_002116.7	53	Gac/Aac																																																																														
KMT2A	0	MSKCC	GRCh37	11	118347680	118347680	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	102	545	0	ENST00000534358.1:c.3317C>G	p.Ser1106Cys	p.S1106C	ENST00000534358	NM_005933.3	1106	tCt/tGt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72991387	72991387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	140	811	0	ENST00000268489.5:c.2658C>G	p.Phe886Leu	p.F886L	ENST00000268489	NM_006885.3	886	ttC/ttG																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0022368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	146	792	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																																																														
ARAF	0	MSKCC	GRCh37	X	47424197	47424197	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0022368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	46	752	1	ENST00000377045.4:c.202C>T	p.Arg68Ter	p.R68*	ENST00000377045	NM_001654.4	68	Cga/Tga																																																																														
SETD2	0	MSKCC	GRCh37	3	47161950	47161951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	48	471	0	ENST00000409792.3:c.4175dup	p.Asn1392LysfsTer6	p.N1392Kfs*6	ENST00000409792	NM_014159.6	1392	aac/aaAc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58734069	58734069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61739281		P-0022368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	45	823	0	ENST00000305921.3:c.1127C>T	p.Ser376Phe	p.S376F	ENST00000305921	NM_003620.3	376	tCt/tTt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	58	698	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
MED12	0	MSKCC	GRCh37	X	70357575	70357575	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	77	672	1	ENST00000374080.3:c.5827-1G>T		p.X1943_splice	ENST00000374080		1943																																																																															
TP53	0	MSKCC	GRCh37	17	7577107	7577107	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	91	672	0	ENST00000269305.4:c.831T>A	p.Cys277Ter	p.C277*	ENST00000269305	NM_001126112.2	277	tgT/tgA																																																																														
DAXX	0	MSKCC	GRCh37	6	33289116	33289116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	76	647	0	ENST00000374542.5:c.436G>A	p.Ala146Thr	p.A146T	ENST00000374542	NM_001141970.1	146	Gcc/Acc																																																																														
CDC73	0	MSKCC	GRCh37	1	193111080	193111080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	41	366	0	ENST00000367435.3:c.613A>G	p.Ile205Val	p.I205V	ENST00000367435	NM_024529.4	205	Ata/Gta																																																																														
ELF3	0	MSKCC	GRCh37	1	201983123	201983129	+	frameshift_variant	Frame_Shift_Del	DEL	GACCTAC	GACCTAC	-			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	62	589	0	ENST00000359651.3:c.974_980del	p.Thr325ArgfsTer3	p.T325Rfs*3	ENST00000359651		324	atGACCTAC/at																																																																														
RRAS2	0	MSKCC	GRCh37	11	14316109	14316109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	21	341	0	ENST00000256196.4:c.316A>G	p.Lys106Glu	p.K106E	ENST00000256196		106	Aag/Gag																																																																														
INPPL1	0	MSKCC	GRCh37	11	71946469	71946469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	71	687	2	ENST00000298229.2:c.2633G>T	p.Arg878Leu	p.R878L	ENST00000298229	NM_001567.3	878	cGc/cTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426489	49426489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	60	858	1	ENST00000301067.7:c.11999G>T	p.Gly4000Val	p.G4000V	ENST00000301067	NM_003482.3	4000	gGc/gTc																																																																														
MSI1	0	MSKCC	GRCh37	12	120784012	120784012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	64	713	0	ENST00000257552.2:c.973C>A	p.Gln325Lys	p.Q325K	ENST00000257552	NM_002442.3	325	Cag/Aag																																																																														
MGA	0	MSKCC	GRCh37	15	41989179	41989179	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	62	695	0	ENST00000219905.7:c.1972del	p.Glu658LysfsTer17	p.E658Kfs*17	ENST00000219905	NM_001164273.1	657	ctG/ct																																																																														
SDHA	0	MSKCC	GRCh37	5	233671	233671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	22	264	0	ENST00000264932.6:c.975G>T	p.Arg325Ser	p.R325S	ENST00000264932	NM_004168.2	325	agG/agT																																																																														
TERT	0	MSKCC	GRCh37	5	1293894	1293894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	42	879	0	ENST00000310581.5:c.1107G>T	p.Arg369Ser	p.R369S	ENST00000310581	NM_198253.2	369	agG/agT																																																																														
APC	0	MSKCC	GRCh37	5	112177569	112177569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	26	407	0	ENST00000257430.4:c.6281del	p.Pro2094LeufsTer18	p.P2094Lfs*18	ENST00000257430	NM_000038.5	2093	tCc/tc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149515423	149515423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	67	474	0	ENST00000261799.4:c.59C>T	p.Ser20Phe	p.S20F	ENST00000261799	NM_002609.3	20	tCt/tTt																																																																														
SOX17	0	MSKCC	GRCh37	8	55372431	55372431	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	51	778	0	ENST00000297316.4:c.1121A>T	p.Glu374Val	p.E374V	ENST00000297316	NM_022454.3	374	gAg/gTg																																																																														
LYN	0	MSKCC	GRCh37	8	56879407	56879410	+	missense_variant	Missense_Mutation	ONP	GGTC	GGTC	TTGT			P-0022251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	34	643	3	ENST00000519728.1:c.924_927delinsTTGT	p.Val309Cys	p.V309C	ENST00000519728	NM_002350.3	308	gtGGTC/gtTTGT																																																																														
ATRX	0	MSKCC	GRCh37	X	76888873	76888873	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0022327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	431	339	0	ENST00000373344.5:c.4957-1G>A		p.X1653_splice	ENST00000373344	NM_000489.3	1653																																																																															
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	162	831	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
CARD11	0	MSKCC	GRCh37	7	2983863	2983863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	126	709	1	ENST00000396946.4:c.667C>T	p.Arg223Ter	p.R223*	ENST00000396946	NM_032415.4	223	Cga/Tga																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0022356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	106	412	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741891	17741891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	37	146	0	ENST00000250003.3:c.562C>T	p.Arg188Cys	p.R188C	ENST00000250003	NM_002478.4	188	Cgc/Tgc																																																																														
APC	0	MSKCC	GRCh37	5	112175241	112175241	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	57	276	0	ENST00000257430.4:c.3951del	p.Asp1318IlefsTer3	p.D1318Ifs*3	ENST00000257430	NM_000038.5	1317	gAa/ga																																																																														
MET	0	MSKCC	GRCh37	7	116381018	116381018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	176	754	0	ENST00000397752.3:c.1640G>A	p.Arg547Gln	p.R547Q	ENST00000397752	NM_000245.2	547	cGa/cAa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	128	648	0	ENST00000342988.3:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000342988	NM_005359.5	351	Gat/Tat																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	453	878	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177933	56177933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	290	653	0	ENST00000399503.3:c.2906C>T	p.Ser969Phe	p.S969F	ENST00000399503	NM_005921.1	969	tCc/tTc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920401	114920401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	384	619	0	ENST00000543371.1:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000543371	NM_001198531.1	448	Cgg/Tgg																																																																														
MEN1	0	MSKCC	GRCh37	11	64572164	64572164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	36	585	0	ENST00000337652.1:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000337652	NM_130803.2	497	cCc/cTc																																																																														
PAK1	0	MSKCC	GRCh37	11	77051789	77051789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	167	656	0	ENST00000356341.3:c.1018C>G	p.Leu340Val	p.L340V	ENST00000356341	NM_002576.4	340	Ctg/Gtg																																																																														
ATRX	0	MSKCC	GRCh37	X	76939492	76939492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022065-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	21	819	0	ENST00000373344.5:c.1256C>T	p.Ala419Val	p.A419V	ENST00000373344	NM_000489.3	419	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0022023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	57	774	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	33	487	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	15	658	0	ENST00000342988.3:c.1052A>C	p.Asp351Ala	p.D351A	ENST00000342988	NM_005359.5	351	gAt/gCt																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	346	693	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc																																																																														
SPEN	0	MSKCC	GRCh37	1	16256021	16256021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	94	585	0	ENST00000375759.3:c.3286G>C	p.Val1096Leu	p.V1096L	ENST00000375759	NM_015001.2	1096	Gtg/Ctg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43772092	43772093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	268	731	0	ENST00000382044.4:c.622_623insA	p.Gly208GlufsTer7	p.G208Efs*7	ENST00000382044	NM_001141980.1	208	ggt/gAgt																																																																														
PPM1D	0	MSKCC	GRCh37	17	58678022	58678022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			32	157	200	0	ENST00000305921.3:c.247G>A	p.Gly83Arg	p.G83R	ENST00000305921	NM_003620.3	83	Ggg/Agg																																																																														
CCNE1	0	MSKCC	GRCh37	19	30313395	30313395	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1404	95	625	0	ENST00000262643.3:c.995T>G	p.Val332Gly	p.V332G	ENST00000262643	NM_001238.2	332	gTt/gGt																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259236	36259236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	76	524	0	ENST00000300305.3:c.255C>A	p.His85Gln	p.H85Q	ENST00000300305		85	caC/caA																																																																														
ABL1	0	MSKCC	GRCh37	9	133750437	133750437	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0022046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	239	554	2	ENST00000318560.5:c.1268G>T	p.Trp423Leu	p.W423L	ENST00000318560	NM_005157.4	423	tGg/tTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944633	40944634	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AA	AA	C			P-0022046-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	179	302	0	ENST00000373198.4:c.1868_1869delinsG	p.Val623GlyfsTer28	p.V623Gfs*28	ENST00000373198	NM_133170.3	623	gTT/gG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	125	1006	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	217	844	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	124	813	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	46	577	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	280	475	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	37	610	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
KDR	0	MSKCC	GRCh37	4	55973911	55973911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	179	708	1	ENST00000263923.4:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000263923	NM_002253.2	469	Gag/Aag																																																																														
MSH2	0	MSKCC	GRCh37	2	47656951	47656951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	98	659	4	ENST00000233146.2:c.1147C>T	p.Arg383Ter	p.R383*	ENST00000233146	NM_000251.2	383	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	307	1081	3	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																																																														
ASXL2	0	MSKCC	GRCh37	2	25982440	25982440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	49	646	3	ENST00000435504.4:c.850C>T	p.Arg284Ter	p.R284*	ENST00000435504		284	Cga/Tga																																																																														
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	253	853	7	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																																																														
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	57	453	3	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89720712	89720712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	53	179	0	ENST00000371953.3:c.867del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	288	gAa/ga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101416	27101417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	163	695	3	ENST00000324856.7:c.4703dup	p.Pro1569SerfsTer3	p.P1569Sfs*3	ENST00000324856	NM_006015.4	1566	-/C																																																																														
KIT	0	MSKCC	GRCh37	4	55602973	55602973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	149	623	1	ENST00000288135.5:c.2683G>A	p.Ala895Thr	p.A895T	ENST00000288135	NM_000222.2	895	Gca/Aca																																																																														
FAT1	0	MSKCC	GRCh37	4	187628637	187628637	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199928348		P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	218	1050	1	ENST00000441802.2:c.2345G>A	p.Arg782His	p.R782H	ENST00000441802	NM_005245.3	782	cGt/cAt																																																																														
TET1	0	MSKCC	GRCh37	10	70405652	70405652	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	34	774	0	ENST00000373644.4:c.3171del	p.Lys1057AsnfsTer25	p.K1057Nfs*25	ENST00000373644	NM_030625.2	1056	Aaa/aa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8733794	8733794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	207	760	1	ENST00000356435.5:c.50G>A	p.Arg17His	p.R17H	ENST00000356435		17	cGc/cAc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727174	40727174	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200157212		P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	111	791	1	ENST00000373198.4:c.3790G>A	p.Ala1264Thr	p.A1264T	ENST00000373198	NM_133170.3	1264	Gcc/Acc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508473	106508473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	62	271	1	ENST00000359195.3:c.467C>T	p.Ala156Val	p.A156V	ENST00000359195	NM_002649.2	156	gCg/gTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	438	866	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11118632	11118632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	238	947	0	ENST00000344626.4:c.2056G>A	p.Glu686Lys	p.E686K	ENST00000344626	NM_003072.3	686	Gag/Aag																																																																														
TET2	0	MSKCC	GRCh37	4	106157335	106157335	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	45	638	0	ENST00000380013.4:c.2236C>T	p.Gln746Ter	p.Q746*	ENST00000380013	NM_001127208.2	746	Caa/Taa																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26032072	26032072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	47	602	1	ENST00000244661.2:c.217C>T	p.Arg73Ter	p.R73*	ENST00000244661	NM_003537.3	73	Cga/Tga																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	285	993	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																																																														
PGR	0	MSKCC	GRCh37	11	100996755	100996757	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	216	682	0	ENST00000325455.5:c.1770_1772delCTT	p.Phe591del	p.F591del	ENST00000325455	NM_001202474.3	590	ttCTTt/ttt																																																																														
AXL	0	MSKCC	GRCh37	19	41743987	41743987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	310	1085	0	ENST00000301178.4:c.922C>T	p.Arg308Cys	p.R308C	ENST00000301178	NM_021913.4	308	Cgc/Tgc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	198	840	8	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
KMT2B	0	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	78	853	3	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061726	38061726	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	56	463	1	ENST00000250448.2:c.263del	p.Gly88AlafsTer6	p.G88Afs*6	ENST00000250448	NM_004496.3	88	gGc/gc																																																																														
AKT3	0	MSKCC	GRCh37	1	243675683	243675683	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	44	638	0	ENST00000263826.5:c.1297A>G	p.Arg433Gly	p.R433G	ENST00000263826	NM_005465.4	433	Aga/Gga																																																																														
SMYD3	0	MSKCC	GRCh37	1	246021879	246021879	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	287	927	0	ENST00000388985.4:c.995A>G	p.Asp332Gly	p.D332G	ENST00000388985		332	gAc/gGc																																																																														
ETV6	0	MSKCC	GRCh37	12	12022790	12022790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	56	719	0	ENST00000396373.4:c.896G>T	p.Arg299Met	p.R299M	ENST00000396373	NM_001987.4	299	aGg/aTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434235	49434235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	420	1276	0	ENST00000301067.7:c.7318G>A	p.Val2440Ile	p.V2440I	ENST00000301067	NM_003482.3	2440	Gtt/Att																																																																														
SLX4	0	MSKCC	GRCh37	16	3652150	3652150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	288	984	0	ENST00000294008.3:c.919A>G	p.Asn307Asp	p.N307D	ENST00000294008	NM_032444.2	307	Aac/Gac																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779424	3779424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	336	1013	2	ENST00000262367.5:c.5624G>A	p.Arg1875His	p.R1875H	ENST00000262367	NM_004380.2	1875	cGc/cAc																																																																														
NUP93	0	MSKCC	GRCh37	16	56857697	56857697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	283	784	1	ENST00000308159.5:c.733C>T	p.Arg245Cys	p.R245C	ENST00000308159	NM_014669.4	245	Cgc/Tgc																																																																														
CTCF	0	MSKCC	GRCh37	16	67670707	67670707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	312	791	0	ENST00000264010.4:c.1952G>A	p.Arg651Gln	p.R651Q	ENST00000264010	NM_006565.3	651	cGg/cAg																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828578	72828578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	58	937	0	ENST00000268489.5:c.8003G>A	p.Arg2668Gln	p.R2668Q	ENST00000268489	NM_006885.3	2668	cGa/cAa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347191	89347191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	165	712	1	ENST00000301030.4:c.5759C>T	p.Thr1920Met	p.T1920M	ENST00000301030	NM_001256183.1	1920	aCg/aTg																																																																														
PPM1D	0	MSKCC	GRCh37	17	58678182	58678182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	166	917	0	ENST00000305921.3:c.407C>T	p.Ala136Val	p.A136V	ENST00000305921	NM_003620.3	136	gCt/gTt																																																																														
AXIN2	0	MSKCC	GRCh37	17	63534358	63534358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	310	988	0	ENST00000307078.5:c.1163G>A	p.Arg388His	p.R388H	ENST00000307078	NM_004655.3	388	cGc/cAc																																																																														
SOX9	0	MSKCC	GRCh37	17	70120257	70120257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	114	1094	0	ENST00000245479.2:c.1259A>G	p.Tyr420Cys	p.Y420C	ENST00000245479	NM_000346.3	420	tAc/tGc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2226905	2226905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	30	354	1	ENST00000398665.3:c.4385G>T	p.Arg1462Leu	p.R1462L	ENST00000398665	NM_032482.2	1462	cGg/cTg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36229306	36229306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	272	908	1	ENST00000222270.7:c.7996G>A	p.Val2666Met	p.V2666M	ENST00000222270	NM_014727.1	2666	Gtg/Atg																																																																														
CD79A	0	MSKCC	GRCh37	19	42383357	42383357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	158	641	0	ENST00000221972.3:c.377G>A	p.Arg126His	p.R126H	ENST00000221972	NM_021601.3	126	cGc/cAc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867700	45867700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	260	911	3	ENST00000391945.4:c.700G>A	p.Asp234Asn	p.D234N	ENST00000391945	NM_000400.3	234	Gac/Aac																																																																														
MSH2	0	MSKCC	GRCh37	2	47707986	47707986	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	112	609	0	ENST00000233146.2:c.2612del	p.Lys871ArgfsTer21	p.K871Rfs*21	ENST00000233146	NM_000251.2	870	gcA/gc																																																																														
IRS1	0	MSKCC	GRCh37	2	227661167	227661168	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	248	974	0	ENST00000305123.5:c.2287_2288del	p.Ser763LeufsTer9	p.S763Lfs*9	ENST00000305123	NM_005544.2	763	TCc/c																																																																														
NF2	0	MSKCC	GRCh37	22	30069277	30069277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	64	729	2	ENST00000338641.4:c.1142C>T	p.Ala381Val	p.A381V	ENST00000338641	NM_000268.3	381	gCt/gTt																																																																														
MST1	0	MSKCC	GRCh37	3	49726048	49726048	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	15	177	0	ENST00000449682.2:c.77A>G	p.Gln26Arg	p.Q26R	ENST00000449682	NM_020998.3	26	cAa/cGa																																																																														
IL7R	0	MSKCC	GRCh37	5	35867524	35867525	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	65	564	0	ENST00000303115.3:c.340_341del	p.Lys114GlufsTer14	p.K114Efs*14	ENST00000303115	NM_002185.3	113	gAA/g																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56181834	56181835	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACTCC			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	54	672	0	ENST00000399503.3:c.4059_4063dup	p.Arg1355HisfsTer24	p.R1355Hfs*24	ENST00000399503	NM_005921.1	1353	tta/ttACTCCa																																																																														
FLT4	0	MSKCC	GRCh37	5	180048589	180048589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	111	939	1	ENST00000261937.6:c.1973G>A	p.Arg658Gln	p.R658Q	ENST00000261937	NM_182925.4	658	cGg/cAg																																																																														
MDC1	0	MSKCC	GRCh37	6	30672362	30672362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	93	767	0	ENST00000376406.3:c.4598C>T	p.Ala1533Val	p.A1533V	ENST00000376406	NM_014641.2	1533	gCa/gTa																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38187059	38187059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	180	983	0	ENST00000317025.8:c.1418C>T	p.Ala473Val	p.A473V	ENST00000317025	NM_023034.1	473	gCg/gTg																																																																														
SOX17	0	MSKCC	GRCh37	8	55371714	55371714	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	167	741	1	ENST00000297316.4:c.404A>T	p.Tyr135Phe	p.Y135F	ENST00000297316	NM_022454.3	135	tAc/tTc																																																																														
PREX2	0	MSKCC	GRCh37	8	69032431	69032431	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	48	826	0	ENST00000288368.4:c.3505G>A	p.Val1169Met	p.V1169M	ENST00000288368	NM_024870.2	1169	Gtg/Atg																																																																														
JAK2	0	MSKCC	GRCh37	9	5090802	5090802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	93	490	0	ENST00000381652.3:c.2950G>A	p.Val984Met	p.V984M	ENST00000381652	NM_004972.3	984	Gtg/Atg																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101908874	101908874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	123	794	0	ENST00000374994.4:c.1238G>A	p.Arg413Gln	p.R413Q	ENST00000374994	NM_004612.2	413	cGa/cAa																																																																														
KLF4	0	MSKCC	GRCh37	9	110249404	110249404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	381	1158	0	ENST00000374672.4:c.1169G>A	p.Arg390Gln	p.R390Q	ENST00000374672	NM_004235.4	390	cGg/cAg																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128230352	128230352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	222	949	2	ENST00000265960.3:c.1244C>T	p.Thr415Met	p.T415M	ENST00000265960	NM_001006617.1	415	aCg/aTg																																																																														
ABL1	0	MSKCC	GRCh37	9	133759635	133759635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	253	967	0	ENST00000318560.5:c.1958C>T	p.Thr653Ile	p.T653I	ENST00000318560	NM_005157.4	653	aCa/aTa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139405140	139405140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	298	991	3	ENST00000277541.6:c.2705G>A	p.Arg902His	p.R902H	ENST00000277541	NM_017617.3	902	cGc/cAc																																																																														
TRAF2	0	MSKCC	GRCh37	9	139815623	139815623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	269	831	4	ENST00000247668.2:c.1094G>A	p.Arg365His	p.R365H	ENST00000247668	NM_021138.3	365	cGc/cAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39914693	39914693	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	72	854	0	ENST00000378444.4:c.4669A>G	p.Thr1557Ala	p.T1557A	ENST00000378444	NM_001123385.1	1557	Acc/Gcc																																																																														
GATA1	0	MSKCC	GRCh37	X	48650777	48650777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	289	943	1	ENST00000376670.3:c.646C>T	p.Arg216Trp	p.R216W	ENST00000376670	NM_002049.3	216	Cgg/Tgg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123245021	123245021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	62	536	0	ENST00000358487.5:c.2083G>A	p.Glu695Lys	p.E695K	ENST00000358487	NM_000141.4	695	Gag/Aag																																																																														
TET1	0	MSKCC	GRCh37	10	70332478	70332478	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	97	622	0	ENST00000373644.4:c.384del	p.Pro129HisfsTer6	p.P129Hfs*6	ENST00000373644	NM_030625.2	128	gTt/gt																																																																														
EED	0	MSKCC	GRCh37	11	85975146	85975238	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCACAAGATGTTGAAAGTTCACAGTAAATAAAAAACATTCGCCTAATTTTTGTATGTTTATACTAGATCATGCTTTACGATTATGGAATAT	TTTCACAAGATGTTGAAAGTTCACAGTAAATAAAAAACATTCGCCTAATTTTTGTATGTTTATACTAGATCATGCTTTACGATTATGGAATAT	-			P-0021980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	13	74	0	ENST00000263360.6:c.635-68_659del		p.X212_splice	ENST00000263360	NM_003797.3	212																																																																															
AR	0	MSKCC	GRCh37	X	66943609	66943609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021980-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	96	681	1	ENST00000374690.3:c.2689G>T	p.Ala897Ser	p.A897S	ENST00000374690	NM_000044.3	897	Gca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	214	872	7	ENST00000269305.4:c.827C>A	p.Ala276Asp	p.A276D	ENST00000269305	NM_001126112.2	276	gCc/gAc																																																																														
ERF	0	MSKCC	GRCh37	19	42752627	42752627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	55	672	0	ENST00000222329.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000222329	NM_006494.2	546	cGa/cAa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489095	56489095	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0022110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	107	635	1	ENST00000267101.3:c.1913+1G>A		p.X638_splice	ENST00000267101	NM_001982.3	638																																																																															
RNF43	0	MSKCC	GRCh37	17	56435744	56435744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022110-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	26	618	0	ENST00000407977.2:c.1393G>A	p.Asp465Asn	p.D465N	ENST00000407977		465	Gac/Aac																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	312	630	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2608	78	644	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
RBM10	0	MSKCC	GRCh37	X	47040904	47040904	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	109	867	0	ENST00000329236.7:c.1202-2A>T		p.X401_splice	ENST00000329236	NM_001204466.1	401																																																																															
HGF	0	MSKCC	GRCh37	7	81359039	81359039	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	46	673	1	ENST00000222390.5:c.922G>T	p.Gly308Cys	p.G308C	ENST00000222390	NM_000601.4	308	Ggt/Tgt																																																																														
FUBP1	0	MSKCC	GRCh37	1	78429754	78429754	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022127-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	24	408	0	ENST00000370768.2:c.1034del	p.Ser345MetfsTer46	p.S345Mfs*46	ENST00000370768	NM_003902.3	345	aGt/at																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101904831	101904831	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	290	478	1	ENST00000374994.4:c.819G>A	p.Trp273Ter	p.W273*	ENST00000374994	NM_004612.2	273	tgG/tgA																																																																														
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	809	897	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	357	1071	2	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056024	26056024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	50	366	0	ENST00000343677.2:c.633G>C	p.Lys211Asn	p.K211N	ENST00000343677	NM_005319.3	211	aaG/aaC																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436088	49436088	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	229	475	1	ENST00000301067.7:c.5893G>T	p.Glu1965Ter	p.E1965*	ENST00000301067	NM_003482.3	1965	Gaa/Taa																																																																														
KIT	0	MSKCC	GRCh37	4	55561756	55561756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	54	465	0	ENST00000288135.5:c.146G>A	p.Arg49His	p.R49H	ENST00000288135	NM_000222.2	49	cGc/cAc																																																																														
TNFRSF14	0	MSKCC	GRCh37	1	2491373	2491373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	179	938	0	ENST00000355716.4:c.416G>T	p.Arg139Leu	p.R139L	ENST00000355716	NM_003820.2	139	cGc/cTc																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780699	9780699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	78	724	2	ENST00000377346.4:c.1501G>A	p.Val501Met	p.V501M	ENST00000377346	NM_005026.3	501	Gtg/Atg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057841	27057841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	354	1055	1	ENST00000324856.7:c.1549C>A	p.Pro517Thr	p.P517T	ENST00000324856	NM_006015.4	517	Cca/Aca																																																																														
SDHC	0	MSKCC	GRCh37	1	161310405	161310405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	290	674	0	ENST00000367975.2:c.201G>A	p.Met67Ile	p.M67I	ENST00000367975	NM_003001.3	67	atG/atA																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195806	102195806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	116	525	0	ENST00000263464.3:c.566T>C	p.Leu189Pro	p.L189P	ENST00000263464	NM_001165.4	189	cTg/cCg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18491359	18491359	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	73	405	0	ENST00000266497.5:c.1273del		p.X425_splice	ENST00000266497		425																																																																															
TBX3	0	MSKCC	GRCh37	12	115109646	115109646	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	163	967	0	ENST00000257566.3:c.2232G>T	p.Ter744TyrextTer22	p.*744Yext*22	ENST00000257566	NM_016569.3	744	taG/taT																																																																														
HNF1A	0	MSKCC	GRCh37	12	121437361	121437361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	330	891	1	ENST00000257555.6:c.1699G>A	p.Val567Ile	p.V567I	ENST00000257555		567	Gtc/Atc																																																																														
RB1	0	MSKCC	GRCh37	13	49037896	49037896	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	285	670	0	ENST00000267163.4:c.2136C>A	p.Cys712Ter	p.C712*	ENST00000267163	NM_000321.2	712	tgC/tgA																																																																														
MGA	0	MSKCC	GRCh37	15	42032306	42032306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	443	797	0	ENST00000219905.7:c.4490C>T	p.Ser1497Leu	p.S1497L	ENST00000219905	NM_001164273.1	1497	tCa/tTa																																																																														
AXIN1	0	MSKCC	GRCh37	16	343541	343542	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	332	931	0	ENST00000262320.3:c.2132_2133del	p.Arg711ProfsTer70	p.R711Pfs*70	ENST00000262320	NM_003502.3	711	cGC/c																																																																														
FANCA	0	MSKCC	GRCh37	16	89851273	89851273	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143083764		P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	310	676	0	ENST00000389301.3:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000389301	NM_000135.2	487	Cgg/Tgg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10597384	10597384	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	837	1071	0	ENST00000171111.5:c.1819G>C	p.Ala607Pro	p.A607P	ENST00000171111	NM_203500.1	607	Gct/Cct																																																																														
CEBPA	0	MSKCC	GRCh37	19	33792557	33792557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			64	95	120	2	ENST00000498907.2:c.764G>T	p.Gly255Val	p.G255V	ENST00000498907	NM_004364.3	255	gGg/gTg																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794949	242794949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	373	1038	0	ENST00000334409.5:c.260G>T	p.Ser87Ile	p.S87I	ENST00000334409	NM_005018.2	87	aGc/aTc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31017139	31017139	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	204	362	0	ENST00000375687.4:c.472-2A>T		p.X158_splice	ENST00000375687	NM_015338.5	158																																																																															
EPHA3	0	MSKCC	GRCh37	3	89498424	89498424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	271	422	0	ENST00000336596.2:c.2396G>T	p.Arg799Leu	p.R799L	ENST00000336596	NM_005233.5	799	cGc/cTc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139826	55139826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	252	585	0	ENST00000257290.5:c.1487C>T	p.Thr496Ile	p.T496I	ENST00000257290	NM_006206.4	496	aCc/aTc																																																																														
TET2	0	MSKCC	GRCh37	4	106196964	106196964	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	108	365	0	ENST00000380013.4:c.5297A>T	p.Tyr1766Phe	p.Y1766F	ENST00000380013	NM_001127208.2	1766	tAc/tTc																																																																														
INPP4B	0	MSKCC	GRCh37	4	143191856	143191857	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	148	694	2	ENST00000262992.4:c.574_575delinsTT	p.Gly192Leu	p.G192L	ENST00000262992	NM_001101669.1	192	GGg/TTg																																																																														
TERT	0	MSKCC	GRCh37	5	1266634	1266634	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201159197		P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	135	664	0	ENST00000310581.5:c.2599G>T	p.Val867Leu	p.V867L	ENST00000310581	NM_198253.2	867	Gtg/Ttg																																																																														
FLT4	0	MSKCC	GRCh37	5	180040023	180040023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	765	1015	0	ENST00000261937.6:c.3419C>A	p.Ala1140Asp	p.A1140D	ENST00000261937	NM_182925.4	1140	gCc/gAc																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120885	94120885	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	616	524	0	ENST00000369303.4:c.166del	p.Glu56LysfsTer45	p.E56Kfs*45	ENST00000369303	NM_004440.3	56	Gaa/aa																																																																														
INHBA	0	MSKCC	GRCh37	7	41729259	41729259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	197	472	0	ENST00000242208.4:c.1270G>C	p.Gly424Arg	p.G424R	ENST00000242208	NM_002192.2	424	Ggg/Cgg																																																																														
RHEB	0	MSKCC	GRCh37	7	151216590	151216590	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	58	262	0	ENST00000262187.5:c.8A>T	p.Gln3Leu	p.Q3L	ENST00000262187	NM_005614.3	3	cAg/cTg																																																																														
NBN	0	MSKCC	GRCh37	8	90993117	90993117	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	113	418	0	ENST00000265433.3:c.325G>T	p.Glu109Ter	p.E109*	ENST00000265433	NM_002485.4	109	Gag/Tag																																																																														
RECQL4	0	MSKCC	GRCh37	8	145742150	145742150	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	316	579	0	ENST00000428558.2:c.355-2A>T		p.X119_splice	ENST00000428558	NM_004260.3	119																																																																															
NOTCH1	0	MSKCC	GRCh37	9	139396918	139396918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	224	527	0	ENST00000277541.6:c.5190del	p.Pro1731ArgfsTer67	p.P1731Rfs*67	ENST00000277541	NM_017617.3	1730	ccG/cc																																																																														
AR	0	MSKCC	GRCh37	X	66931251	66931251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	215	253	0	ENST00000374690.3:c.1893G>C	p.Lys631Asn	p.K631N	ENST00000374690	NM_000044.3	631	aaG/aaC																																																																														
ATRX	0	MSKCC	GRCh37	X	76937785	76937786	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0022354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	398	374	1	ENST00000373344.5:c.2962_2963delinsTT	p.Gly988Leu	p.G988L	ENST00000373344	NM_000489.3	988	GGa/TTa																																																																														
HIST3H3	0	MSKCC	GRCh37	1	228612923	228612923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	145	730	2	ENST00000366696.1:c.104G>A	p.Gly35Asp	p.G35D	ENST00000366696	NM_003493.2	35	gGc/gAc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27056279	27056279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	125	621	0	ENST00000324856.7:c.1275G>T	p.Gln425His	p.Q425H	ENST00000324856	NM_006015.4	425	caG/caT																																																																														
INPPL1	0	MSKCC	GRCh37	11	71946465	71946465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	80	999	0	ENST00000298229.2:c.2629G>A	p.Glu877Lys	p.E877K	ENST00000298229	NM_001567.3	877	Gag/Aag																																																																														
INPPL1	0	MSKCC	GRCh37	11	71949125	71949125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	83	905	1	ENST00000298229.2:c.3592G>A	p.Glu1198Lys	p.E1198K	ENST00000298229	NM_001567.3	1198	Gag/Aag																																																																														
FLT3	0	MSKCC	GRCh37	13	28609656	28609656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	57	739	1	ENST00000241453.7:c.1573G>A	p.Glu525Lys	p.E525K	ENST00000241453	NM_004119.2	525	Gag/Aag																																																																														
NF1	0	MSKCC	GRCh37	17	29652842	29652842	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	49	268	0	ENST00000358273.4:c.4843del	p.Thr1615LeufsTer9	p.T1615Lfs*9	ENST00000358273	NM_001042492.2	1614	Aaa/aa																																																																														
STAT3	0	MSKCC	GRCh37	17	40477038	40477038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	76	737	0	ENST00000264657.5:c.1407G>C	p.Gln469His	p.Q469H	ENST00000264657	NM_139276.2	469	caG/caC																																																																														
STAT3	0	MSKCC	GRCh37	17	40478175	40478175	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	80	863	0	ENST00000264657.5:c.1324G>C	p.Glu442Gln	p.E442Q	ENST00000264657	NM_139276.2	442	Gag/Cag																																																																														
HGF	0	MSKCC	GRCh37	7	81359074	81359074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022372-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	89	522	0	ENST00000222390.5:c.887C>T	p.Thr296Ile	p.T296I	ENST00000222390	NM_000601.4	296	aCt/aTt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55152098	55152107	+	protein_altering_variant	In_Frame_Del	DEL	ATGCATGATT	ATGCATGATT	C			P-0022357-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	572	861	0	ENST00000257290.5:c.2530_2539delinsC	p.Met844_Ser847delinsPro	p.M844_S847delinsP	ENST00000257290	NM_006206.4	844	ATGCATGATTcg/Ccg																																																																														
RB1	0	MSKCC	GRCh37	13	48942689	48942695	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGTAA	AAAGTAA	GTT			P-0022113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	42	420	1	ENST00000267163.4:c.1076_1082delinsGTT	p.Lys359SerfsTer7	p.K359Sfs*7	ENST00000267163	NM_000321.2	359	aAAAGTAAc/aGTTc																																																																														
NCOR1	0	MSKCC	GRCh37	17	15961859	15961859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	100	542	0	ENST00000268712.3:c.5936C>T	p.Ala1979Val	p.A1979V	ENST00000268712	NM_006311.3	1979	gCc/gTc																																																																														
SMARCB1	0	MSKCC	GRCh37	22	24129377	24129377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	74	500	0	ENST00000263121.7:c.21C>A	p.Ser7Arg	p.S7R	ENST00000263121	NM_003073.3	7	agC/agA																																																																														
DROSHA	0	MSKCC	GRCh37	5	31401596	31401596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	75	730	0	ENST00000344624.3:c.4068G>C	p.Arg1356Ser	p.R1356S	ENST00000344624		1356	agG/agC																																																																														
HIST1H3J	0	MSKCC	GRCh37	6	27858284	27858284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	97	663	1	ENST00000359303.2:c.287C>T	p.Ala96Val	p.A96V	ENST00000359303	NM_003535.2	96	gCg/gTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518409	8518409	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022113-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	38	254	0	ENST00000356435.5:c.982A>C	p.Thr328Pro	p.T328P	ENST00000356435		328	Act/Cct																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	115	627	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118359410	118359410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	34	486	0	ENST00000534358.1:c.4414G>A	p.Glu1472Lys	p.E1472K	ENST00000534358	NM_005933.3	1472	Gaa/Aaa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3795345	3795345	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	22	491	0	ENST00000262367.5:c.3847T>C	p.Cys1283Arg	p.C1283R	ENST00000262367	NM_004380.2	1283	Tgc/Cgc																																																																														
CDKN2B	0	MSKCC	GRCh37	9	22008806	22008807	+	missense_variant	Missense_Mutation	DNP	GC	GC	AG			P-0022170-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	28	387	1	ENST00000276925.6:c.146_147delinsCT	p.Arg49Pro	p.R49P	ENST00000276925	NM_004936.3	49	cGC/cCT																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	122	745	1	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	82	845	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18278073	18278073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1294	170	867	5	ENST00000222254.8:c.1693C>T	p.Pro565Ser	p.P565S	ENST00000222254	NM_005027.3	565	Ccg/Tcg																																																																														
ARID2	0	MSKCC	GRCh37	12	46245345	46245345	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	128	608	0	ENST00000334344.6:c.3439A>T	p.Asn1147Tyr	p.N1147Y	ENST00000334344	NM_152641.2	1147	Aac/Tac																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873005	35873005	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0021971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	45	551	0	ENST00000216797.5:c.228-1G>A		p.X76_splice	ENST00000216797	NM_020529.2	76																																																																															
DNMT1	0	MSKCC	GRCh37	19	10251518	10251518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	146	870	0	ENST00000340748.4:c.3414G>T	p.Lys1138Asn	p.K1138N	ENST00000340748		1138	aaG/aaT																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	19	777	3	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
NFKBIA	0	MSKCC	GRCh37	14	35873806	35873807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	175	516	0	ENST00000216797.5:c.44dup	p.Arg17ProfsTer69	p.R17Pfs*69	ENST00000216797	NM_020529.2	15	ggc/ggGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	68	649	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
RAD50	0	MSKCC	GRCh37	5	131915115	131915115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	76	615	0	ENST00000265335.6:c.472C>T	p.His158Tyr	p.H158Y	ENST00000265335		158	Cat/Tat																																																																														
ELF3	0	MSKCC	GRCh37	1	201981857	201981858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	67	759	0	ENST00000359651.3:c.572dup	p.Gly192TrpfsTer4	p.G192Wfs*4	ENST00000359651		190	tcc/tCcc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	133	754	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	70	382	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	24	439	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
CDC73	0	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	70	620	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																																																														
NF1	0	MSKCC	GRCh37	17	29576010	29576010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	27	548	1	ENST00000358273.4:c.3983C>T	p.Pro1328Leu	p.P1328L	ENST00000358273	NM_001042492.2	1328	cCa/cTa																																																																														
PREX2	0	MSKCC	GRCh37	8	69028076	69028076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	76	844	1	ENST00000288368.4:c.3235G>A	p.Glu1079Lys	p.E1079K	ENST00000288368	NM_024870.2	1079	Gaa/Aaa																																																																														
SYK	0	MSKCC	GRCh37	9	93624625	93624625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0022009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	57	533	0	ENST00000375746.1:c.716A>G	p.Gln239Arg	p.Q239R	ENST00000375746	NM_001174167.1	239	cAg/cGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	88	542	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	20	357	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25463286	25463286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139293773		P-0022088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	178	446	0	ENST00000264709.3:c.2207G>A	p.Arg736His	p.R736H	ENST00000264709	NM_175629.2	736	cGc/cAc																																																																														
GATA3	0	MSKCC	GRCh37	10	8111542	8111543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	199	596	0	ENST00000346208.3:c.1029dup	p.Tyr344LeufsTer8	p.Y344Lfs*8	ENST00000346208		343	ctc/ctCc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178037	56178037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	17	314	0	ENST00000399503.3:c.3010C>A	p.His1004Asn	p.H1004N	ENST00000399503	NM_005921.1	1004	Cat/Aat																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	88	672	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FLT4	0	MSKCC	GRCh37	5	180056420	180056420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	69	564	0	ENST00000261937.6:c.824G>A	p.Arg275Gln	p.R275Q	ENST00000261937	NM_182925.4	275	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0022182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	548	748	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																																																														
BLM	0	MSKCC	GRCh37	15	91290720	91290720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs139282091		P-0022182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	84	377	1	ENST00000355112.3:c.98C>T	p.Ser33Leu	p.S33L	ENST00000355112	NM_000057.2	33	tCa/tTa																																																																														
SDHC	0	MSKCC	GRCh37	1	161326601	161326601	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	179	511	0	ENST00000367975.2:c.376T>C	p.Tyr126His	p.Y126H	ENST00000367975	NM_003001.3	126	Tat/Cat																																																																														
SLX4	0	MSKCC	GRCh37	16	3633221	3633221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1595	153	990	0	ENST00000294008.3:c.5030C>G	p.Pro1677Arg	p.P1677R	ENST00000294008	NM_032444.2	1677	cCc/cGc																																																																														
RPTOR	0	MSKCC	GRCh37	17	78704358	78704358	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0022182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	147	359	0	ENST00000306801.3:c.508-2A>G		p.X170_splice	ENST00000306801	NM_020761.2	170																																																																															
ATRX	0	MSKCC	GRCh37	X	76874448	76874448	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0022182-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	153	336	0	ENST00000373344.5:c.5274T>A	p.Tyr1758Ter	p.Y1758*	ENST00000373344	NM_000489.3	1758	taT/taA																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	177	484	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	218	408	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0022043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	47	272	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
FBXW7	0	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	87	343	1	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32169182	32169182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022043-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	222	516	0	ENST00000375023.3:c.3851G>C	p.Cys1284Ser	p.C1284S	ENST00000375023	NM_004557.3	1284	tGc/tCc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	31	640	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89346770	89346771	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	14	537	1	ENST00000301030.4:c.6179_6180delinsTT	p.Ser2060Phe	p.S2060F	ENST00000301030	NM_001256183.1	2060	tCC/tTT																																																																														
FGF19	0	MSKCC	GRCh37	11	69518553	69518554	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0022366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	19	696	3	ENST00000294312.3:c.91_92delinsAA	p.Gly31Lys	p.G31K	ENST00000294312	NM_005117.2	31	GGg/AAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425470	49425471	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0022366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	36	968	0	ENST00000301067.7:c.13017_13018delinsTT	p.His4340Tyr	p.H4340Y	ENST00000301067	NM_003482.3	4339	acCCat/acTTat																																																																														
AMER1	0	MSKCC	GRCh37	X	63410150	63410150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022366-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	19	455	0	ENST00000330258.3:c.3017C>T	p.Ser1006Leu	p.S1006L	ENST00000330258	NM_152424.3	1006	tCa/tTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577519	7577527	+	inframe_deletion	In_Frame_Del	DEL	GATGGTGAG	GATGGTGAG	-			P-0022321-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	381	769	1	ENST00000269305.4:c.754_762del	p.Leu252_Ile254del	p.L252_I254del	ENST00000269305	NM_001126112.2	252	CTCACCATC/-																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	205	445	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0022360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	410	840	2	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
BRAF	0	MSKCC	GRCh37	7	140453130	140453138	+	inframe_deletion	In_Frame_Del	DEL	GATTTCACT	GATTTCACT	-			P-0022360-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	208	568	0	ENST00000288602.6:c.1797_1805del	p.Val600_Ser602del	p.V600_S602del	ENST00000288602	NM_004333.4	599	acAGTGAAATCt/act																																																																														
BCOR	0	MSKCC	GRCh37	X	39930388	39930388	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	186	488	0	ENST00000378444.4:c.3076T>G	p.Leu1026Val	p.L1026V	ENST00000378444	NM_001123385.1	1026	Ttg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	519	713	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	343	660	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0022109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	140	289	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	85	596	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																																																														
ATM	0	MSKCC	GRCh37	11	108124713	108124713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	196	564	0	ENST00000278616.4:c.2071G>A	p.Asp691Asn	p.D691N	ENST00000278616	NM_000051.3	691	Gat/Aat																																																																														
DICER1	0	MSKCC	GRCh37	14	95590951	95590951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022109-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	21	359	0	ENST00000343455.3:c.958A>G	p.Lys320Glu	p.K320E	ENST00000343455	NM_177438.2	320	Aaa/Gaa																																																																														
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	422	749	1	ENST00000269305.4:c.1010G>C	p.Arg337Pro	p.R337P	ENST00000269305	NM_001126112.2	337	cGc/cCc																																																																														
RB1	0	MSKCC	GRCh37	13	48941720	48941720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			38	122	441	0	ENST00000267163.4:c.1030C>T	p.Gln344Ter	p.Q344*	ENST00000267163	NM_000321.2	344	Cag/Tag																																																																														
PALB2	0	MSKCC	GRCh37	16	23641487	23641487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	345	774	0	ENST00000261584.4:c.1988G>A	p.Arg663His	p.R663H	ENST00000261584	NM_024675.3	663	cGc/cAc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937905	36937905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	544	901	1	ENST00000361632.4:c.931C>A	p.Arg311Ser	p.R311S	ENST00000361632		311	Cgc/Agc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18650671	18650671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	107	458	0	ENST00000266497.5:c.2882G>T	p.Gly961Val	p.G961V	ENST00000266497		961	gGa/gTa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779355	3779355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	439	767	0	ENST00000262367.5:c.5693G>A	p.Ser1898Asn	p.S1898N	ENST00000262367	NM_004380.2	1898	aGc/aAc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3788656	3788656	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	49	431	0	ENST00000262367.5:c.4298A>T	p.Tyr1433Phe	p.Y1433F	ENST00000262367	NM_004380.2	1433	tAt/tTt																																																																														
CYLD	0	MSKCC	GRCh37	16	50783617	50783617	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	75	485	0	ENST00000398568.2:c.8C>G	p.Ser3Ter	p.S3*	ENST00000398568	NM_001042412.1	3	tCa/tGa																																																																														
RPTOR	0	MSKCC	GRCh37	17	78931452	78931452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	457	719	1	ENST00000306801.3:c.3399G>T	p.Gln1133His	p.Q1133H	ENST00000306801	NM_020761.2	1133	caG/caT																																																																														
ALK	0	MSKCC	GRCh37	2	29436902	29436902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	64	617	3	ENST00000389048.3:c.3691C>T	p.Arg1231Trp	p.R1231W	ENST00000389048	NM_004304.4	1231	Cgg/Tgg																																																																														
ALK	0	MSKCC	GRCh37	2	29445228	29445228	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	499	767	0	ENST00000389048.3:c.3497T>A	p.Met1166Lys	p.M1166K	ENST00000389048	NM_004304.4	1166	aTg/aAg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212615430	212615430	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	244	504	0	ENST00000342788.4:c.557-1G>T		p.X186_splice	ENST00000342788	NM_005235.2	186																																																																															
STAG2	0	MSKCC	GRCh37	X	123217400	123217400	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0022173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	193	249	0	ENST00000218089.9:c.3053+1G>A		p.X1018_splice	ENST00000218089	NM_001042749.1	1018																																																																															
PIK3CA	0	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	105	501	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc																																																																														
UPF1	0	MSKCC	GRCh37	19	18961036	18961036	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	34	653	0	ENST00000262803.5:c.614T>A	p.Val205Glu	p.V205E	ENST00000262803	NM_002911.3	205	gTg/gAg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980413	1980413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	67	1056	2	ENST00000382891.5:c.3875C>T	p.Ser1292Leu	p.S1292L	ENST00000382891	NM_133335.3	1292	tCg/tTg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	348	871	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PTPN11	0	MSKCC	GRCh37	12	112888165	112888165	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	38	845	2	ENST00000351677.2:c.181G>T	p.Asp61Tyr	p.D61Y	ENST00000351677	NM_002834.3	61	Gat/Tat																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191490	185191490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	443	911	1	ENST00000265026.3:c.2371G>A	p.Gly791Ser	p.G791S	ENST00000265026	NM_004721.4	791	Ggc/Agc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4099229	4099229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022185-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	47	802	1	ENST00000262948.5:c.889C>T	p.Arg297Trp	p.R297W	ENST00000262948	NM_030662.3	297	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	492	713	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0022118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	248	569	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971053	21971054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	162	509	0	ENST00000304494.5:c.304dup	p.Ala102GlyfsTer18	p.A102Gfs*18	ENST00000304494	NM_000077.4	102	gcg/gGcg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971053	21971054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	162	509	0	ENST00000304494.5:c.304dup	p.Ala102GlyfsTer18	p.A102Gfs*18	ENST00000304494	NM_000077.4	102	gcg/gGcg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971053	21971054	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022118-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	162	509	0	ENST00000304494.5:c.304dup	p.Ala102GlyfsTer18	p.A102Gfs*18	ENST00000304494	NM_000077.4	102	gcg/gGcg																																																																														
PAX5	0	MSKCC	GRCh37	9	37015094	37015094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	25	812	1	ENST00000358127.4:c.310C>T	p.Arg104Cys	p.R104C	ENST00000358127	NM_001280556.1	104	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0022330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	48	749	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																																																															
KMT2C	0	MSKCC	GRCh37	7	151879646	151879646	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	25	254	0	ENST00000262189.6:c.5299del	p.Ile1767LeufsTer10	p.I1767Lfs*10	ENST00000262189	NM_170606.2	1767	Att/tt																																																																														
B2M	0	MSKCC	GRCh37	15	45003808	45003808	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	160	431	0	ENST00000558401.1:c.64C>T	p.Gln22Ter	p.Q22*	ENST00000558401	NM_004048.2	22	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	473	649	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																																																														
AMER1	0	MSKCC	GRCh37	X	63412453	63412453	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	100	714	0	ENST00000330258.3:c.714A>C	p.Lys238Asn	p.K238N	ENST00000330258	NM_152424.3	238	aaA/aaC																																																																														
GLI1	0	MSKCC	GRCh37	12	57864705	57864705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	85	648	0	ENST00000228682.2:c.2182G>A	p.Asp728Asn	p.D728N	ENST00000228682	NM_005269.2	728	Gat/Aat																																																																														
PBRM1	0	MSKCC	GRCh37	3	52610580	52610580	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	64	468	0	ENST00000394830.3:c.3593C>G	p.Thr1198Ser	p.T1198S	ENST00000394830	NM_018313.4	1198	aCc/aGc																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808661	1808661	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0022058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	93	667	0	ENST00000260795.2:c.2274C>G	p.Asp758Glu	p.D758E	ENST00000260795		758	gaC/gaG																																																																														
FAT1	0	MSKCC	GRCh37	4	187517962	187517962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	337	510	0	ENST00000441802.2:c.12732C>A	p.Asp4244Glu	p.D4244E	ENST00000441802	NM_005245.3	4244	gaC/gaA																																																																														
STAG2	0	MSKCC	GRCh37	X	123181354	123181378	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTAAACTTTTATATTGAATATTT	AGGTAAACTTTTATATTGAATATTT	-			P-0022058-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	62	216	0	ENST00000218089.9:c.819+2_819+26del		p.X273_splice	ENST00000218089	NM_001042749.1	273																																																																															
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0006010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			489	163	736	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0006010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			315	95	779	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																																																														
PBRM1	0	MSKCC	GRCh37	3	52584629	52584629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			597	199	777	1	ENST00000394830.3:c.4384C>T	p.Gln1462Ter	p.Q1462*	ENST00000394830	NM_018313.4	1462	Cag/Tag																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			240	74	549	0	ENST00000263967.3:c.1034A>G	p.Asn345Ser	p.N345S	ENST00000263967	NM_006218.2	345	aAt/aGt																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197359	26197359	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			470	142	610	0	ENST00000356476.2:c.120C>G	p.His40Gln	p.H40Q	ENST00000356476		40	caC/caG																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101904885	101904885	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			312	142	646	0	ENST00000374994.4:c.873C>G	p.Tyr291Ter	p.Y291*	ENST00000374994	NM_004612.2	291	taC/taG																																																																														
XIAP	0	MSKCC	GRCh37	X	123022514	123022514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	222	437	0	ENST00000355640.3:c.923C>G	p.Thr308Ser	p.T308S	ENST00000355640		308	aCt/aGt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106879	27106895	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGAGATGGCTGTGGT	CGGGAGATGGCTGTGGT	-			P-0006010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			326	179	757	0	ENST00000324856.7:c.6490_6506del	p.Arg2164ThrfsTer55	p.R2164Tfs*55	ENST00000324856	NM_006015.4	2164	CGGGAGATGGCTGTGGTa/a																																																																														
SPEN	0	MSKCC	GRCh37	1	16202773	16202773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140309172		P-0006010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			539	32	772	1	ENST00000375759.3:c.481C>T	p.Arg161Trp	p.R161W	ENST00000375759	NM_015001.2	161	Cgg/Tgg																																																																														
MSI1	0	MSKCC	GRCh37	12	120784068	120784068	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006010-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			945	53	1035	0	ENST00000257552.2:c.917G>C	p.Gly306Ala	p.G306A	ENST00000257552	NM_002442.3	306	gGc/gCc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	155	693	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	45	386	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	44	447	0	ENST00000263967.3:c.3129G>C	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atC																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	71	450	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																																																														
APC	0	MSKCC	GRCh37	5	112176027	112176027	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	40	344	0	ENST00000257430.4:c.4737del	p.Ile1580PhefsTer70	p.I1580Ffs*70	ENST00000257430	NM_000038.5	1579	aTt/at																																																																														
SMAD2	0	MSKCC	GRCh37	18	45374882	45374882	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	59	752	0	ENST00000262160.6:c.961C>T	p.Arg321Ter	p.R321*	ENST00000262160	NM_005901.5	321	Cga/Tga																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114710561	114710581	+	inframe_deletion	In_Frame_Del	DEL	GACGAACTGATTTCCTTCAAA	GACGAACTGATTTCCTTCAAA	-			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	64	481	0	ENST00000543371.1:c.51_71del	p.Leu18_Glu24del	p.L18_E24del	ENST00000543371	NM_001198531.1	16	GACGAACTGATTTCCTTCAAA/-																																																																														
KMT2D	0	MSKCC	GRCh37	12	49416362	49416371	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCAGCTCATA	CCAGCTCATA	-			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	138	477	6	ENST00000301067.7:c.16338+2_16338+11del		p.X5446_splice	ENST00000301067	NM_003482.3	5446																																																																															
SMAD3	0	MSKCC	GRCh37	15	67473735	67473735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	172	703	2	ENST00000327367.4:c.815G>A	p.Gly272Glu	p.G272E	ENST00000327367	NM_005902.3	272	gGg/gAg																																																																														
IDH1	0	MSKCC	GRCh37	2	209106766	209106766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	86	708	0	ENST00000345146.2:c.802G>T	p.Ala268Ser	p.A268S	ENST00000345146	NM_005896.2	268	Gcc/Tcc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56161750	56161750	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	88	622	0	ENST00000399503.3:c.1247C>A	p.Ser416Ter	p.S416*	ENST00000399503	NM_005921.1	416	tCa/tAa																																																																														
APC	0	MSKCC	GRCh37	5	112174228	112174229	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAC			P-0022152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	47	533	0	ENST00000257430.4:c.2938_2941dup	p.Pro981GlnfsTer5	p.P981Qfs*5	ENST00000257430	NM_000038.5	979	-/AAAC																																																																														
MTOR	0	MSKCC	GRCh37	1	11187726	11187726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	436	829	0	ENST00000361445.4:c.6171G>C	p.Met2057Ile	p.M2057I	ENST00000361445	NM_004958.3	2057	atG/atC																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344928	118344928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	39	335	0	ENST00000534358.1:c.3054G>A	p.Met1018Ile	p.M1018I	ENST00000534358	NM_005933.3	1018	atG/atA																																																																														
EPHB1	0	MSKCC	GRCh37	3	134885785	134885785	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0022363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	118	685	0	ENST00000398015.3:c.1696A>G	p.Lys566Glu	p.K566E	ENST00000398015	NM_004441.4	566	Aaa/Gaa																																																																														
KIT	0	MSKCC	GRCh37	4	55593602	55593610	+	inframe_deletion	In_Frame_Del	DEL	GTGGAAGGT	GTGGAAGGT	-			P-0022363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	583	613	0	ENST00000288135.5:c.1668_1676del	p.Gln556_Val559delinsHis	p.Q556_V559delinsH	ENST00000288135	NM_000222.2	556	caGTGGAAGGTt/cat																																																																														
DAXX	0	MSKCC	GRCh37	6	33287970	33287970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	63	576	0	ENST00000374542.5:c.1283C>T	p.Pro428Leu	p.P428L	ENST00000374542	NM_001141970.1	428	cCt/cTt																																																																														
RAC1	0	MSKCC	GRCh37	7	6442013	6442013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	52	261	0	ENST00000356142.4:c.572C>T	p.Ala191Val	p.A191V	ENST00000356142	NM_018890.3	191	gCg/gTg																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852568	63852568	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022092-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	101	429	0	ENST00000279873.7:c.3346A>T	p.Met1116Leu	p.M1116L	ENST00000279873	NM_032199.2	1116	Atg/Ttg																																																																														
SPEN	0	MSKCC	GRCh37	1	16256670	16256670	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	134	553	1	ENST00000375759.3:c.3935A>T	p.Tyr1312Phe	p.Y1312F	ENST00000375759	NM_015001.2	1312	tAt/tTt																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72827928	72827929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	188	756	0	ENST00000268489.5:c.8652dup	p.Glu2885Ter	p.E2885*	ENST00000268489	NM_006885.3	2884	-/T																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72832341	72832341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	48	529	0	ENST00000268489.5:c.4240G>A	p.Glu1414Lys	p.E1414K	ENST00000268489	NM_006885.3	1414	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	126	550	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SMAD3	0	MSKCC	GRCh37	15	67479811	67479811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	149	632	0	ENST00000327367.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000327367	NM_005902.3	373	cGc/cAc																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	136	629	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	145	652	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348280	89348280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	266	1008	1	ENST00000301030.4:c.4670C>T	p.Pro1557Leu	p.P1557L	ENST00000301030	NM_001256183.1	1557	cCa/cTa																																																																														
MTOR	0	MSKCC	GRCh37	1	11174497	11174497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	173	714	0	ENST00000361445.4:c.7178A>G	p.Asp2393Gly	p.D2393G	ENST00000361445	NM_004958.3	2393	gAt/gGt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43701201	43701202	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	143	721	0	ENST00000382044.4:c.5493_5494del	p.His1833CysfsTer5	p.H1833Cfs*5	ENST00000382044	NM_001141980.1	1831	gtGTct/gtct																																																																														
SLX4	0	MSKCC	GRCh37	16	3647845	3647845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	248	786	0	ENST00000294008.3:c.1319C>T	p.Ala440Val	p.A440V	ENST00000294008	NM_032444.2	440	gCg/gTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70119955	70119955	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	104	432	1	ENST00000245479.2:c.957del	p.Tyr319Ter	p.Y319*	ENST00000245479	NM_000346.3	319	taC/ta																																																																														
SMAD2	0	MSKCC	GRCh37	18	45375001	45375001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	283	587	0	ENST00000262160.6:c.842A>T	p.Glu281Val	p.E281V	ENST00000262160	NM_005901.5	281	gAa/gTa																																																																														
ERCC2	0	MSKCC	GRCh37	19	45858047	45858047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142568756		P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	221	802	0	ENST00000391945.4:c.1606G>A	p.Val536Met	p.V536M	ENST00000391945	NM_000400.3	536	Gtg/Atg																																																																														
APC	0	MSKCC	GRCh37	5	112175537	112175541	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAT	GGCAT	ATTA			P-0022243-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	96	414	3	ENST00000257430.4:c.4246_4250delinsATTA	p.Gly1416IlefsTer3	p.G1416Ifs*3	ENST00000257430	NM_000038.5	1416	GGCATt/ATTAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	334	870	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
CDK12	0	MSKCC	GRCh37	17	37676268	37676268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	843	875	0	ENST00000447079.4:c.3023G>A	p.Arg1008Gln	p.R1008Q	ENST00000447079	NM_015083.1	1008	cGg/cAg																																																																														
EZH2	0	MSKCC	GRCh37	7	148524325	148524325	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	83	718	0	ENST00000320356.2:c.659C>G	p.Ser220Cys	p.S220C	ENST00000320356	NM_004456.4	220	tCt/tGt																																																																														
MYC	0	MSKCC	GRCh37	8	128752848	128752848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	35	509	2	ENST00000377970.2:c.1009G>A	p.Ala337Thr	p.A337T	ENST00000377970	NM_002467.4	337	Gcc/Acc																																																																														
CDK12	0	MSKCC	GRCh37	17	37667784	37667784	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			2355	1289	489	0	ENST00000447079.4:c.2669G>A	p.Arg890His	p.R890H	ENST00000447079	NM_015083.1	890	cGc/cAc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412059	63412059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			726	114	1086	0	ENST00000330258.3:c.1108G>A	p.Glu370Lys	p.E370K	ENST00000330258	NM_152424.3	370	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7579372	7579373	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	202	873	0	ENST00000269305.4:c.314dup	p.Ser106GlnfsTer43	p.S106Qfs*43	ENST00000269305	NM_001126112.2	105	ggc/ggGc																																																																														
TBX3	0	MSKCC	GRCh37	12	115110046	115110046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007550-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			467	135	1089	0	ENST00000257566.3:c.1832C>T	p.Ala611Val	p.A611V	ENST00000257566	NM_016569.3	611	gCg/gTg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	154	649	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0022190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	59	427	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	54	708	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	53	623	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022190-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	98	1105	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0022098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	370	692	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589589	67589591	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0022098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	59	389	0	ENST00000274335.5:c.1353_1355del	p.Glu451_Tyr452delinsAsp	p.E451_Y452delinsD	ENST00000274335		451	gAATat/gat																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67593360	67593363	+	frameshift_variant	Frame_Shift_Del	DEL	CCTT	CCTT	-			P-0022098-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	124	387	0	ENST00000274335.5:c.2106_2109del	p.Leu703CysfsTer11	p.L703Cfs*11	ENST00000274335		702	tcCCTT/tc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	532	662	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	360	529	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123274794	123274794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	916	608	0	ENST00000358487.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000358487	NM_000141.4	375	tAc/tGc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72829731	72829731	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	659	762	0	ENST00000268489.5:c.6850C>T	p.Arg2284Ter	p.R2284*	ENST00000268489	NM_006885.3	2284	Cga/Tga																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881620	37881620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1317	797	691	0	ENST00000269571.5:c.2690G>A	p.Arg897Gln	p.R897Q	ENST00000269571		897	cGg/cAg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057998	27058014	+	frameshift_variant	Frame_Shift_Del	DEL	CACCCTCGACGCTCTCC	CACCCTCGACGCTCTCC	-			P-0022081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	469	587	0	ENST00000324856.7:c.1708_1724del	p.Pro570AlafsTer47	p.P570Afs*47	ENST00000324856	NM_006015.4	569	gCACCCTCGACGCTCTCC/g																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105594	27105598	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGG	GGTGG	-			P-0022081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	382	584	0	ENST00000324856.7:c.5206_5210del	p.Val1736Ter	p.V1736*	ENST00000324856	NM_006015.4	1735	gaGGTGGgt/gagt																																																																														
MGA	0	MSKCC	GRCh37	15	42032336	42032336	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	432	637	0	ENST00000219905.7:c.4520C>G	p.Ser1507Cys	p.S1507C	ENST00000219905	NM_001164273.1	1507	tCt/tGt																																																																														
SOX17	0	MSKCC	GRCh37	8	55372074	55372081	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTCTCG	AGGTCTCG	-			P-0022081-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	354	533	0	ENST00000297316.4:c.764_771del	p.Gln255ArgfsTer107	p.Q255Rfs*107	ENST00000297316	NM_022454.3	255	cAGGTCTCG/c																																																																														
AURKA	0	MSKCC	GRCh37	20	54958118	54958118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022189-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	134	578	0	ENST00000312783.6:c.489del	p.Leu164TyrfsTer19	p.L164Yfs*19	ENST00000312783	NM_198436.1	163	gtG/gt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	526	536	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101609	27101609	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	204	591	3	ENST00000324856.7:c.4891C>T	p.Gln1631Ter	p.Q1631*	ENST00000324856	NM_006015.4	1631	Cag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	129	251	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11958231	11958231	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	144	318	0	ENST00000353533.5:c.144del	p.Phe48LeufsTer14	p.F48Lfs*14	ENST00000353533	NM_003010.3	47	aaT/aa																																																																														
SLX4	0	MSKCC	GRCh37	16	3641202	3641202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	378	723	0	ENST00000294008.3:c.2437G>A	p.Glu813Lys	p.E813K	ENST00000294008	NM_032444.2	813	Gag/Aag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349241	89349241	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1341	197	735	0	ENST00000301030.4:c.3709A>G	p.Lys1237Glu	p.K1237E	ENST00000301030	NM_001256183.1	1237	Aag/Gag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212652864	212652864	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	13	345	0	ENST00000342788.4:c.442T>A	p.Tyr148Asn	p.Y148N	ENST00000342788	NM_005235.2	148	Tat/Aat																																																																														
DCUN1D1	0	MSKCC	GRCh37	3	182679046	182679046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	64	419	0	ENST00000292782.4:c.488A>G	p.Asn163Ser	p.N163S	ENST00000292782	NM_020640.2	163	aAt/aGt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56177504	56177504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	64	367	0	ENST00000399503.3:c.2477T>C	p.Met826Thr	p.M826T	ENST00000399503	NM_005921.1	826	aTg/aCg																																																																														
FLT4	0	MSKCC	GRCh37	5	180030329	180030329	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142322370		P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	356	496	1	ENST00000261937.6:c.3955C>T	p.Arg1319Trp	p.R1319W	ENST00000261937	NM_182925.4	1319	Cgg/Tgg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412733	63412733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021985-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	190	476	1	ENST00000330258.3:c.434C>A	p.Thr145Lys	p.T145K	ENST00000330258	NM_152424.3	145	aCa/aAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	26	868	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11123694	11123694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	294	889	1	ENST00000344626.4:c.2344G>A	p.Gly782Ser	p.G782S	ENST00000344626	NM_003072.3	782	Ggc/Agc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3786791	3786791	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	91	575	0	ENST00000262367.5:c.4420T>C	p.Cys1474Arg	p.C1474R	ENST00000262367	NM_004380.2	1474	Tgt/Cgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100102	27100103	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0022172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	286	842	0	ENST00000324856.7:c.3898_3899del	p.Met1300GlufsTer22	p.M1300Efs*22	ENST00000324856	NM_006015.4	1300	ATg/g																																																																														
RFWD2	0	MSKCC	GRCh37	1	175996762	175996762	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	46	729	0	ENST00000367669.3:c.1675T>G	p.Cys559Gly	p.C559G	ENST00000367669	NM_022457.5	559	Tgc/Ggc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651922	36651926	+	frameshift_variant	Frame_Shift_Del	DEL	GCAAG	GCAAG	-			P-0022172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	240	743	0	ENST00000244741.5:c.46_50del	p.Lys16LeufsTer18	p.K16Lfs*18	ENST00000244741	NM_000389.4	15	aGCAAG/a																																																																														
KDM5C	0	MSKCC	GRCh37	X	53239938	53239938	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022172-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	117	851	0	ENST00000375401.3:c.1503G>C	p.Trp501Cys	p.W501C	ENST00000375401	NM_004187.3	501	tgG/tgC																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	239	604	0				ENST00000310581	NM_198253.2																																																																																
ALK	0	MSKCC	GRCh37	2	29416378	29416380	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1674	211	1030	0	ENST00000389048.3:c.4573_4575del	p.Lys1525del	p.K1525del	ENST00000389048	NM_004304.4	1525	AAG/-																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	780	1184	1	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag																																																																														
ATM	0	MSKCC	GRCh37	11	108214063	108214063	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	141	505	0	ENST00000278616.4:c.8383G>C	p.Asp2795His	p.D2795H	ENST00000278616	NM_000051.3	2795	Gat/Cat																																																																														
APC	0	MSKCC	GRCh37	5	112179275	112179275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	76	486	0	ENST00000257430.4:c.7984G>A	p.Glu2662Lys	p.E2662K	ENST00000257430	NM_000038.5	2662	Gag/Aag																																																																														
BRD4	0	MSKCC	GRCh37	19	15350822	15350822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200902225		P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	233	723	0	ENST00000263377.2:c.3181G>A	p.Glu1061Lys	p.E1061K	ENST00000263377	NM_058243.2	1061	Gaa/Aaa																																																																														
DDR2	0	MSKCC	GRCh37	1	162745977	162745977	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	61	488	0	ENST00000367921.3:c.2100C>G	p.Tyr700Ter	p.Y700*	ENST00000367921	NM_006182.2	700	taC/taG																																																																														
DDR2	0	MSKCC	GRCh37	1	162745987	162745987	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	67	510	0	ENST00000367921.3:c.2110C>A	p.Leu704Ile	p.L704I	ENST00000367921	NM_006182.2	704	Ctt/Att																																																																														
ELF3	0	MSKCC	GRCh37	1	201981203	201981209	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTGAC	ATGTGAC	-			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	895	1040	0	ENST00000359651.3:c.285_291del	p.Cys95TrpfsTer58	p.C95Wfs*58	ENST00000359651		94	cgATGTGAC/cg																																																																														
PARP1	0	MSKCC	GRCh37	1	226553737	226553737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	129	540	0	ENST00000366794.5:c.2423C>A	p.Ser808Tyr	p.S808Y	ENST00000366794	NM_001618.3	808	tCt/tAt																																																																														
FGFR2	0	MSKCC	GRCh37	10	123239406	123239406	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	85	505	0	ENST00000358487.5:c.2431C>T	p.Gln811Ter	p.Q811*	ENST00000358487	NM_000141.4	811	Cag/Tag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18716350	18716350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	132	524	0	ENST00000266497.5:c.3697A>C	p.Ser1233Arg	p.S1233R	ENST00000266497		1233	Agc/Cgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431684	49431684	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	239	911	0	ENST00000301067.7:c.9455T>G	p.Leu3152Arg	p.L3152R	ENST00000301067	NM_003482.3	3152	cTg/cGg																																																																														
CDK8	0	MSKCC	GRCh37	13	26927885	26927893	+	inframe_deletion	In_Frame_Del	DEL	CAAGTTTCA	CAAGTTTCA	-			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	79	409	0	ENST00000381527.3:c.326_334del	p.Lys109_His111del	p.K109_H111del	ENST00000381527	NM_001260.1	108	atCAAGTTTCAc/atc																																																																														
IRS2	0	MSKCC	GRCh37	13	110434553	110434553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	479	840	0	ENST00000375856.3:c.3848C>T	p.Ser1283Phe	p.S1283F	ENST00000375856	NM_003749.2	1283	tCc/tTc																																																																														
TSC2	0	MSKCC	GRCh37	16	2104442	2104442	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	536	893	1	ENST00000219476.3:c.481+1G>T		p.X161_splice	ENST00000219476	NM_000548.3	161																																																																															
CREBBP	0	MSKCC	GRCh37	16	3788624	3788628	+	frameshift_variant	Frame_Shift_Del	DEL	AACGT	AACGT	-			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	107	679	0	ENST00000262367.5:c.4326_4330del	p.Arg1443ProfsTer8	p.R1443Pfs*8	ENST00000262367	NM_004380.2	1442	ccACGTTgc/ccgc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881428	37881428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1353	225	867	4	ENST00000269571.5:c.2620G>A	p.Glu874Lys	p.E874K	ENST00000269571		874	Gag/Aag																																																																														
ERCC2	0	MSKCC	GRCh37	19	45872375	45872375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	678	919	0	ENST00000391945.4:c.136A>G	p.Thr46Ala	p.T46A	ENST00000391945	NM_000400.3	46	Acc/Gcc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29121076	29121076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	189	969	0	ENST00000328354.6:c.481G>A	p.Glu161Lys	p.E161K	ENST00000328354	NM_007194.3	161	Gaa/Aaa																																																																														
EP300	0	MSKCC	GRCh37	22	41547987	41548002	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGATACTCAGCCGG	GCAGATACTCAGCCGG	-			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	138	841	0	ENST00000263253.7:c.2968_2983del	p.Ala990ArgfsTer25	p.A990Rfs*25	ENST00000263253	NM_001429.3	990	GCAGATACTCAGCCGGag/ag																																																																														
MLH1	0	MSKCC	GRCh37	3	37090482	37090482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	146	562	0	ENST00000231790.2:c.2077G>C	p.Glu693Gln	p.E693Q	ENST00000231790	NM_000249.3	693	Gag/Cag																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67569249	67569249	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	205	654	0	ENST00000274335.5:c.366T>G	p.Phe122Leu	p.F122L	ENST00000274335		122	ttT/ttG																																																																														
CSF1R	0	MSKCC	GRCh37	5	149437075	149437075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	456	889	0	ENST00000286301.3:c.2213C>T	p.Ser738Phe	p.S738F	ENST00000286301	NM_005211.3	738	tCt/tTt																																																																														
ROS1	0	MSKCC	GRCh37	6	117687320	117687320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	59	599	0	ENST00000368508.3:c.2731C>G	p.Gln911Glu	p.Q911E	ENST00000368508	NM_002944.2	911	Cag/Gag																																																																														
LATS1	0	MSKCC	GRCh37	6	150001419	150001419	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	82	832	0	ENST00000253339.5:c.2185del	p.Ala729LeufsTer37	p.A729Lfs*37	ENST00000253339		729	Gct/ct																																																																														
LATS1	0	MSKCC	GRCh37	6	150004939	150004961	+	frameshift_variant	Frame_Shift_Del	DEL	AGTCCAGGTACACTAATGTTATA	AGTCCAGGTACACTAATGTTATA	-			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	110	572	0	ENST00000253339.5:c.1264_1286del	p.Tyr422AlafsTer21	p.Y422Afs*21	ENST00000253339		422	TATAACATTAGTGTACCTGGACTg/g																																																																														
FGFR1	0	MSKCC	GRCh37	8	38274872	38274872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	238	878	0	ENST00000425967.3:c.1708G>C	p.Gly570Arg	p.G570R	ENST00000425967	NM_001174067.1	570	Ggg/Cgg																																																																														
NBN	0	MSKCC	GRCh37	8	90994972	90994993	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGTTAACACAGCATGATTTC	GCAGTTAACACAGCATGATTTC	-			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	34	577	0	ENST00000265433.3:c.128_149del	p.Arg43LeufsTer5	p.R43Lfs*5	ENST00000265433	NM_002485.4	43	cGAAATCATGCTGTGTTAACTGCt/ct																																																																														
JAK2	0	MSKCC	GRCh37	9	5044440	5044441	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	69	788	0	ENST00000381652.3:c.390_391del	p.Arg130SerfsTer11	p.R130Sfs*11	ENST00000381652	NM_004972.3	130	AGa/a																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922816	44922825	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTGCCTGC	TCCTGCCTGC	-			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	375	317	0	ENST00000377967.4:c.1677_1686del	p.Pro560LeufsTer30	p.P560Lfs*30	ENST00000377967	NM_021140.2	559	cgTCCTGCCTGC/cg																																																																														
ARAF	0	MSKCC	GRCh37	X	47426651	47426651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	472	369	0	ENST00000377045.4:c.896C>T	p.Ser299Leu	p.S299L	ENST00000377045	NM_001654.4	299	tCa/tTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	456	732	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	516	654	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0022095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	107	223	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
APC	0	MSKCC	GRCh37	5	112151263	112151263	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	275	406	1	ENST00000257430.4:c.907del	p.Arg303GlyfsTer2	p.R303Gfs*2	ENST00000257430	NM_000038.5	302	cgA/cg																																																																														
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0022237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	565	931	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																																																														
KIT	0	MSKCC	GRCh37	4	55599332	55599332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	194	724	1	ENST00000288135.5:c.2458G>T	p.Asp820Tyr	p.D820Y	ENST00000288135	NM_000222.2	820	Gat/Tat																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593401	48593409	+	inframe_deletion	In_Frame_Del	DEL	CAAAGGTGT	CAAAGGTGT	-			P-0018476-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			338	48	520	0	ENST00000342988.3:c.1152_1160del	p.Lys385_Val387del	p.K385_V387del	ENST00000342988	NM_005359.5	384	ggCAAAGGTGTg/ggg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	177	605	0				ENST00000310581	NM_198253.2																																																																																
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	13	532	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																																																														
HRAS	0	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	320	871	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																																																														
PAK7	0	MSKCC	GRCh37	20	9546721	9546721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	67	332	0	ENST00000353224.5:c.1301C>T	p.Ala434Val	p.A434V	ENST00000353224	NM_177990.2	434	gCg/gTg																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665041	138665041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	38	231	0	ENST00000330315.3:c.524G>A	p.Gly175Glu	p.G175E	ENST00000330315	NM_023067.3	175	gGg/gAg																																																																														
ERCC2	0	MSKCC	GRCh37	19	45856356	45856356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	183	915	0	ENST00000391945.4:c.1816G>C	p.Glu606Gln	p.E606Q	ENST00000391945	NM_000400.3	606	Gag/Cag																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30729940	30729940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	131	544	0	ENST00000359013.4:c.1536G>A	p.Met512Ile	p.M512I	ENST00000359013	NM_001024847.2	512	atG/atA																																																																														
RHEB	0	MSKCC	GRCh37	7	151188049	151188049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	83	515	0	ENST00000262187.5:c.104A>G	p.Tyr35Cys	p.Y35C	ENST00000262187	NM_005614.3	35	tAc/tGc																																																																														
ATM	0	MSKCC	GRCh37	11	108139268	108139268	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55723361		P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	96	944	1	ENST00000278616.4:c.2770C>T	p.Arg924Trp	p.R924W	ENST00000278616	NM_000051.3	924	Cgg/Tgg																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913409		P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	96	363	0	ENST00000349496.5:c.134C>G	p.Ser45Cys	p.S45C	ENST00000349496	NM_001904.3	45	tCt/tGt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56481648	56481648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	230	864	0	ENST00000267101.3:c.683A>G	p.His228Arg	p.H228R	ENST00000267101	NM_001982.3	228	cAt/cGt																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	231	1017	1	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120471679	120471679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	42	554	0	ENST00000256646.2:c.3812A>G	p.Asn1271Ser	p.N1271S	ENST00000256646	NM_024408.3	1271	aAc/aGc																																																																														
ELF3	0	MSKCC	GRCh37	1	201982419	201982419	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	189	932	0	ENST00000359651.3:c.798del	p.Ser266ArgfsTer28	p.S266Rfs*28	ENST00000359651		266	agC/ag																																																																														
KMT2A	0	MSKCC	GRCh37	11	118343199	118343199	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	90	405	0	ENST00000534358.1:c.1325G>C	p.Arg442Pro	p.R442P	ENST00000534358	NM_005933.3	442	cGa/cCa																																																																														
ETV6	0	MSKCC	GRCh37	12	12038881	12038881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	122	472	0	ENST00000396373.4:c.1174G>A	p.Glu392Lys	p.E392K	ENST00000396373	NM_001987.4	392	Gag/Aag																																																																														
ERBB3	0	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	199	682	0	ENST00000267101.3:c.1166C>G	p.Thr389Arg	p.T389R	ENST00000267101	NM_001982.3	389	aCa/aGa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489558	56489558	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	153	598	0	ENST00000267101.3:c.2023A>T	p.Arg675Trp	p.R675W	ENST00000267101	NM_001982.3	675	Agg/Tgg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495477	56495477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	189	736	0	ENST00000267101.3:c.3667G>A	p.Glu1223Lys	p.E1223K	ENST00000267101	NM_001982.3	1223	Gag/Aag																																																																														
CREBBP	0	MSKCC	GRCh37	16	3828809	3828824	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTTGGACGCTGAAA	GGCTTGGACGCTGAAA	-			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	150	676	1	ENST00000262367.5:c.1824-6_1833del		p.X608_splice	ENST00000262367	NM_004380.2	608																																																																															
BCL2	0	MSKCC	GRCh37	18	60985815	60985815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	35	616	0	ENST00000333681.4:c.85G>A	p.Glu29Lys	p.E29K	ENST00000333681		29	Gag/Aag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2210848	2210855	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCCCAGGG	CCCCAGGG	-			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	89	394	0	ENST00000398665.3:c.1345_1351+1del		p.X449_splice	ENST00000398665	NM_032482.2	449																																																																															
UPF1	0	MSKCC	GRCh37	19	18960973	18960973	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	219	850	0	ENST00000262803.5:c.551A>C	p.Tyr184Ser	p.Y184S	ENST00000262803	NM_002911.3	184	tAc/tCc																																																																														
BBC3	0	MSKCC	GRCh37	19	47731539	47731539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			29	18	59	0	ENST00000449228.1:c.253C>T	p.Pro85Ser	p.P85S	ENST00000449228	NM_001127240.2	85	Ccc/Tcc																																																																														
MYCN	0	MSKCC	GRCh37	2	16082191	16082191	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	122	957	0	ENST00000281043.3:c.5C>G	p.Pro2Arg	p.P2R	ENST00000281043	NM_005378.4	2	cCg/cGg																																																																														
CASP8	0	MSKCC	GRCh37	2	202123021	202123021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	53	490	0	ENST00000358485.4:c.67C>A	p.Pro23Thr	p.P23T	ENST00000358485	NM_001080125.1	23	Ccc/Acc																																																																														
WWTR1	0	MSKCC	GRCh37	3	149374915	149374915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	194	884	0	ENST00000360632.3:c.179C>T	p.Ser60Leu	p.S60L	ENST00000360632	NM_015472.4	60	tCg/tTg																																																																														
RAD50	0	MSKCC	GRCh37	5	131940638	131940678	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCAGACTGTGGAATTATCCACTGAAGTTCAGTCTTTGTA	GAGCAGACTGTGGAATTATCCACTGAAGTTCAGTCTTTGTA	CAG			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	67	586	2	ENST00000265335.6:c.2665_2705delinsCAG	p.Glu889GlnfsTer8	p.E889Qfs*8	ENST00000265335		889	GAGCAGACTGTGGAATTATCCACTGAAGTTCAGTCTTTGTAc/CAGc																																																																														
CSF1R	0	MSKCC	GRCh37	5	149433718	149433718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	125	875	0	ENST00000286301.3:c.2833G>A	p.Glu945Lys	p.E945K	ENST00000286301	NM_005211.3	945	Gag/Aag																																																																														
NSD1	0	MSKCC	GRCh37	5	176636787	176636787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	100	603	0	ENST00000439151.2:c.1387G>A	p.Asp463Asn	p.D463N	ENST00000439151	NM_022455.4	463	Gat/Aat																																																																														
TAP1	0	MSKCC	GRCh37	6	32821485	32821485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	167	820	0	ENST00000354258.4:c.109C>T	p.Arg37Trp	p.R37W	ENST00000354258	NM_000593.5	37	Cgg/Tgg																																																																														
CDK6	0	MSKCC	GRCh37	7	92462483	92462537	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTCGCCGGTCTGCACCCGCACGCGCTTCAACGCCACGAAACGGCCTCCGTTCT	TCCTCGCCGGTCTGCACCCGCACGCGCTTCAACGCCACGAAACGGCCTCCGTTCT	-			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	54	719	0	ENST00000265734.4:c.101_155del	p.Lys34ArgfsTer14	p.K34Rfs*14	ENST00000265734	NM_001259.6	34	aAGAACGGAGGCCGTTTCGTGGCGTTGAAGCGCGTGCGGGTGCAGACCGGCGAGGAg/ag																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106508872	106508872	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	16	435	0	ENST00000359195.3:c.866A>T	p.Asn289Ile	p.N289I	ENST00000359195	NM_002649.2	289	aAc/aTc																																																																														
KLF4	0	MSKCC	GRCh37	9	110250394	110250394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022314-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	165	954	0	ENST00000374672.4:c.281G>A	p.Arg94Lys	p.R94K	ENST00000374672	NM_004235.4	94	aGa/aAa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	95	567	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0022119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	62	687	0	ENST00000324856.7:c.1650dupC	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																																																														
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	19	692	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0022031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	311	560	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0022031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	124	519	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
CBFB	0	MSKCC	GRCh37	16	67070608	67070608	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022031-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	89	396	0	ENST00000412916.2:c.232C>T	p.Arg78Ter	p.R78*	ENST00000412916		78	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	370	604	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	384	707	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	118	406	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18446858	18446858	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	60	376	0	ENST00000266497.5:c.943A>G	p.Ile315Val	p.I315V	ENST00000266497		315	Att/Gtt																																																																														
MGA	0	MSKCC	GRCh37	15	42003024	42003057	+	frameshift_variant	Frame_Shift_Del	DEL	TGTACCAGCTTCCCACTAAGAGTACCAGTTATGT	TGTACCAGCTTCCCACTAAGAGTACCAGTTATGT	-			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	405	791	1	ENST00000219905.7:c.2561_2594del	p.Val854AspfsTer8	p.V854Dfs*8	ENST00000219905	NM_001164273.1	854	gTGTACCAGCTTCCCACTAAGAGTACCAGTTATGTa/ga																																																																														
RNF43	0	MSKCC	GRCh37	17	56492812	56492812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	196	606	0	ENST00000407977.2:c.127G>A	p.Glu43Lys	p.E43K	ENST00000407977		43	Gaa/Aaa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2216416	2216416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	223	689	0	ENST00000398665.3:c.2060C>T	p.Ala687Val	p.A687V	ENST00000398665	NM_032482.2	687	gCc/gTc																																																																														
MSH6	0	MSKCC	GRCh37	2	48010433	48010433	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			861	394	656	0	ENST00000234420.5:c.61A>G	p.Asn21Asp	p.N21D	ENST00000234420	NM_000179.2	21	Aac/Gac																																																																														
CTLA4	0	MSKCC	GRCh37	2	204732741	204732741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	177	583	0	ENST00000302823.3:c.76T>C	p.Phe26Leu	p.F26L	ENST00000302823	NM_005214.4	26	Ttt/Ctt																																																																														
FAT1	0	MSKCC	GRCh37	4	187538994	187538994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	305	623	0	ENST00000441802.2:c.8746C>T	p.Pro2916Ser	p.P2916S	ENST00000441802	NM_005245.3	2916	Cca/Tca																																																																														
FGFR1	0	MSKCC	GRCh37	8	38282109	38282109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	479	990	0	ENST00000425967.3:c.947C>T	p.Pro316Leu	p.P316L	ENST00000425967	NM_001174067.1	316	cCg/cTg																																																																														
RBM10	0	MSKCC	GRCh37	X	47038867	47038870	+	frameshift_variant	Frame_Shift_Del	DEL	GAGC	GAGC	-			P-0022378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	242	907	0	ENST00000329236.7:c.643_646del	p.Glu215GlnfsTer15	p.E215Qfs*15	ENST00000329236	NM_001204466.1	215	GAGCca/ca																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	495	670	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
RBM10	0	MSKCC	GRCh37	X	47044965	47044966	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0022290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	162	994	4	ENST00000329236.7:c.2057_2058delinsAT	p.Cys686Tyr	p.C686Y	ENST00000329236	NM_001204466.1	686	tGC/tAT																																																																														
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	112	258	0	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																																																														
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	129	638	7	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	75	366	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11098455	11098455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	197	516	1	ENST00000344626.4:c.973G>A	p.Val325Met	p.V325M	ENST00000344626	NM_003072.3	325	Gtg/Atg																																																																														
ATM	0	MSKCC	GRCh37	11	108196880	108196880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	608	491	0	ENST00000278616.4:c.6908del	p.Lys2303ArgfsTer7	p.K2303Rfs*7	ENST00000278616	NM_000051.3	2301	gcA/gc																																																																														
ASXL1	171023	MSKCC	GRCh37	20	30946592	30946594	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs752094508		P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	175	352	0	ENST00000375687.4:c.25_27del	p.Lys9del	p.K9del	ENST00000375687	NM_015338.5	5	cAGAag/cag																																																																														
MST1R	0	MSKCC	GRCh37	3	49936349	49936349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	216	685	0	ENST00000296474.3:c.1499G>A	p.Arg500Gln	p.R500Q	ENST00000296474	NM_002447.2	500	cGg/cAg																																																																														
STAT5A	0	MSKCC	GRCh37	17	40457680	40457680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	155	679	1	ENST00000345506.4:c.1433C>T	p.Ala478Val	p.A478V	ENST00000345506	NM_003152.3	478	gCc/gTc																																																																														
RARA	0	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	121	678	4	ENST00000254066.5:c.1319delC	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc																																																																														
IL10	0	MSKCC	GRCh37	1	206945647	206945647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	204	576	0	ENST00000423557.1:c.134G>A	p.Arg45Gln	p.R45Q	ENST00000423557	NM_000572.2	45	cGa/cAa																																																																														
RPTOR	0	MSKCC	GRCh37	17	78897444	78897444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	110	824	1	ENST00000306801.3:c.2779C>T	p.Arg927Trp	p.R927W	ENST00000306801	NM_020761.2	927	Cgg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16258944	16258944	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	153	798	1	ENST00000375759.3:c.6215delA	p.Asn2072ThrfsTer14	p.N2072Tfs*14	ENST00000375759	NM_015001.2	2070	gAa/ga																																																																														
FUBP1	0	MSKCC	GRCh37	1	78429367	78429367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	159	591	0	ENST00000370768.2:c.1075C>T	p.Arg359Ter	p.R359*	ENST00000370768	NM_003902.3	359	Cga/Tga																																																																														
AKT1	0	MSKCC	GRCh37	14	105239881	105239881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	285	666	0	ENST00000349310.3:c.739G>A	p.Glu247Lys	p.E247K	ENST00000349310	NM_001014432.1	247	Gag/Aag																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43767848	43767848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	218	633	0	ENST00000382044.4:c.1000T>C	p.Cys334Arg	p.C334R	ENST00000382044	NM_001141980.1	334	Tgt/Cgt																																																																														
SLX4	0	MSKCC	GRCh37	16	3640766	3640766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	114	626	0	ENST00000294008.3:c.2873G>A	p.Cys958Tyr	p.C958Y	ENST00000294008	NM_032444.2	958	tGc/tAc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789651	3789651	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	109	617	0	ENST00000262367.5:c.4208A>G	p.Asp1403Gly	p.D1403G	ENST00000262367	NM_004380.2	1403	gAc/gGc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16024503	16024503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	111	509	0	ENST00000268712.3:c.1715G>A	p.Arg572Gln	p.R572Q	ENST00000268712	NM_006311.3	572	cGa/cAa																																																																														
EZH1	0	MSKCC	GRCh37	17	40870471	40870471	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	104	427	1	ENST00000428826.2:c.931+1G>A		p.X311_splice	ENST00000428826		311																																																																															
DOT1L	0	MSKCC	GRCh37	19	2210457	2210457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	234	838	0	ENST00000398665.3:c.1064C>T	p.Thr355Met	p.T355M	ENST00000398665	NM_032482.2	355	aCg/aTg																																																																														
CARM1	0	MSKCC	GRCh37	19	10982474	10982474	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	33	115	0	ENST00000327064.4:c.99del	p.Gly34AlafsTer91	p.G34Afs*91	ENST00000327064	NM_199141.1	32	ttC/tt																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257162	19257163	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	68	675	0	ENST00000162023.5:c.800dup	p.Gly268TrpfsTer17	p.G268Wfs*17	ENST00000162023		267	cct/ccCt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36218825	36218825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	142	858	1	ENST00000222270.7:c.4436C>T	p.Ser1479Leu	p.S1479L	ENST00000222270	NM_014727.1	1479	tCg/tTg																																																																														
MSH2	0	MSKCC	GRCh37	2	47703577	47703577	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	267	694	0	ENST00000233146.2:c.2077T>C	p.Cys693Arg	p.C693R	ENST00000233146	NM_000251.2	693	Tgt/Cgt																																																																														
SETD2	0	MSKCC	GRCh37	3	47162704	47162704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142723093		P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	83	576	2	ENST00000409792.3:c.3422C>T	p.Pro1141Leu	p.P1141L	ENST00000409792	NM_014159.6	1141	cCg/cTg																																																																														
MST1R	0	MSKCC	GRCh37	3	49940126	49940126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	89	666	2	ENST00000296474.3:c.917G>A	p.Arg306His	p.R306H	ENST00000296474	NM_002447.2	306	cGc/cAc																																																																														
GSK3B	0	MSKCC	GRCh37	3	119631607	119631607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	100	492	1	ENST00000316626.5:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000316626		220	cGg/cAg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38958587	38958587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	124	329	1	ENST00000357387.3:c.2378C>T	p.Ala793Val	p.A793V	ENST00000357387	NM_152756.3	793	gCg/gTg																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149513317	149513317	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147568171		P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	97	487	0	ENST00000261799.4:c.766C>T	p.Arg256Trp	p.R256W	ENST00000261799	NM_002609.3	256	Cgg/Tgg																																																																														
IRF4	0	MSKCC	GRCh37	6	394915	394915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	149	498	1	ENST00000380956.4:c.311G>T	p.Ser104Ile	p.S104I	ENST00000380956	NM_001195286.1	104	aGc/aTc																																																																														
EGFR	0	MSKCC	GRCh37	7	55273120	55273120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	138	675	0	ENST00000275493.2:c.3443A>G	p.Asn1148Ser	p.N1148S	ENST00000275493	NM_005228.3	1148	aAc/aGc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8500946	8500946	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	77	490	0	ENST00000356435.5:c.1936T>C	p.Ser646Pro	p.S646P	ENST00000356435		646	Tcc/Ccc																																																																														
MED12	0	MSKCC	GRCh37	X	70357094	70357094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	203	480	0	ENST00000374080.3:c.5609C>T	p.Thr1870Ile	p.T1870I	ENST00000374080		1870	aCc/aTc																																																																														
GATA3	0	MSKCC	GRCh37	10	8111514	8111515	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0022364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	577	710	0	ENST00000346208.3:c.1002_1003delGG	p.Asp335ProfsTer16	p.D335Pfs*16	ENST00000346208		334	GGg/g																																																																														
MSI1	0	MSKCC	GRCh37	12	120796817	120796817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	77	749	2	ENST00000257552.2:c.442C>T	p.Arg148Trp	p.R148W	ENST00000257552	NM_002442.3	148	Cgg/Tgg																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149497284	149497284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	53	704	0	ENST00000261799.4:c.3034G>C	p.Val1012Leu	p.V1012L	ENST00000261799	NM_002609.3	1012	Gtg/Ctg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	24	772	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575132	48575132	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	28	477	0	ENST00000342988.3:c.326T>G	p.Leu109Arg	p.L109R	ENST00000342988	NM_005359.5	109	cTa/cGa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151877837	151877852	+	frameshift_variant	Frame_Shift_Del	DEL	TATTCTGTGTATCAGT	TATTCTGTGTATCAGT	-			P-0022319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	37	424	0	ENST00000262189.6:c.7093_7108del	p.Thr2365LeufsTer2	p.T2365Lfs*2	ENST00000262189	NM_170606.2	2365	ACTGATACACAGAATAct/ct																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	63	673	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0022302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	482	951	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
NOTCH3	4854	MSKCC	GRCh37	19	15311619	15311621	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-	rs772632118		P-0022302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	13	133	0	ENST00000263388.2:c.96_98del	p.Leu33del	p.L33del	ENST00000263388	NM_000435.2	32	ctGCTa/cta																																																																														
PTPRS	0	MSKCC	GRCh37	19	5208051	5208051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	91	663	1	ENST00000357368.4:c.5660C>T	p.Thr1887Met	p.T1887M	ENST00000357368	NM_002850.3	1887	aCg/aTg																																																																														
ABL1	0	MSKCC	GRCh37	9	133729537	133729537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	79	729	1	ENST00000318560.5:c.166G>T	p.Ala56Ser	p.A56S	ENST00000318560	NM_005157.4	56	Gct/Tct																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15288526	15288526	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	51	236	0	ENST00000263388.2:c.4213T>G	p.Cys1405Gly	p.C1405G	ENST00000263388	NM_000435.2	1405	Tgc/Ggc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0022302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	196	509	0	ENST00000304494.5:c.458-1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21968242	21968242	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0022302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	196	509	0	ENST00000304494.5:c.458-1G>A		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
NOTCH1	0	MSKCC	GRCh37	9	139412663	139412663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	363	1041	1	ENST00000277541.6:c.1181G>T	p.Gly394Val	p.G394V	ENST00000277541	NM_017617.3	394	gGc/gTc																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413064	139413064	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	170	642	0	ENST00000277541.6:c.1078G>T	p.Glu360Ter	p.E360*	ENST00000277541	NM_017617.3	360	Gag/Tag																																																																														
KIT	0	MSKCC	GRCh37	4	55569926	55569926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	29	321	1	ENST00000288135.5:c.793G>A	p.Gly265Ser	p.G265S	ENST00000288135	NM_000222.2	265	Ggt/Agt																																																																														
SPEN	0	MSKCC	GRCh37	1	16245981	16245981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	37	433	0	ENST00000375759.3:c.1604G>A	p.Arg535Gln	p.R535Q	ENST00000375759	NM_015001.2	535	cGa/cAa																																																																														
EED	0	MSKCC	GRCh37	11	85961336	85961336	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	14	167	0	ENST00000263360.6:c.115-2A>T		p.X39_splice	ENST00000263360	NM_003797.3	39																																																																															
TP53	0	MSKCC	GRCh37	17	7577144	7577171	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTAGATTACCACTACTCAGGATAGGAA	AGTAGATTACCACTACTCAGGATAGGAA	-			P-0022169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	43	594	1	ENST00000269305.4:c.783-16_794del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																																																															
NOTCH3	0	MSKCC	GRCh37	19	15299868	15299871	+	frameshift_variant	Frame_Shift_Del	DEL	GACA	GACA	-			P-0022169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	60	834	0	ENST00000263388.2:c.1307_1310del	p.Leu436ArgfsTer14	p.L436Rfs*14	ENST00000263388	NM_000435.2	436	cTGTCg/cg																																																																														
SOX2	0	MSKCC	GRCh37	3	181431026	181431026	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022169-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	39	772	0	ENST00000325404.1:c.878A>G	p.His293Arg	p.H293R	ENST00000325404	NM_003106.3	293	cAc/cGc																																																																														
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	169	667	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																																																														
APC	0	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	90	389	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																																																														
PRKD1	0	MSKCC	GRCh37	14	30100133	30100133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	172	972	0	ENST00000331968.5:c.1487C>T	p.Thr496Met	p.T496M	ENST00000331968	NM_002742.2	496	aCg/aTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49446455	49446455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	103	657	0	ENST00000301067.7:c.1150G>C	p.Glu384Gln	p.E384Q	ENST00000301067	NM_003482.3	384	Gag/Cag																																																																														
GLI1	0	MSKCC	GRCh37	12	57861162	57861162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	258	795	0	ENST00000228682.2:c.959C>T	p.Thr320Met	p.T320M	ENST00000228682	NM_005269.2	320	aCg/aTg																																																																														
SETD8	0	MSKCC	GRCh37	12	123880917	123880917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	197	600	0	ENST00000330479.4:c.535C>T	p.Arg179Cys	p.R179C	ENST00000330479	NM_020382.3	179	Cgc/Tgc																																																																														
RAD51	0	MSKCC	GRCh37	15	41001278	41001287	+	frameshift_variant	Frame_Shift_Del	DEL	GACCCAGATC	GACCCAGATC	-			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	126	849	0	ENST00000267868.3:c.399_408del	p.Lys133AsnfsTer5	p.K133Nfs*5	ENST00000267868	NM_002875.4	133	aaGACCCAGATC/aa																																																																														
MYCN	0	MSKCC	GRCh37	2	16082206	16082206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	186	1236	1	ENST00000281043.3:c.20C>A	p.Ser7Tyr	p.S7Y	ENST00000281043	NM_005378.4	7	tCc/tAc																																																																														
KDR	0	MSKCC	GRCh37	4	55976680	55976680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	274	916	0	ENST00000263923.4:c.1145T>C	p.Val382Ala	p.V382A	ENST00000263923	NM_002253.2	382	gTa/gCa																																																																														
APC	0	MSKCC	GRCh37	5	112170770	112170770	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022137-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	288	941	0	ENST00000257430.4:c.1866C>A	p.Tyr622Ter	p.Y622*	ENST00000257430	NM_000038.5	622	taC/taA																																																																														
FLT4	0	MSKCC	GRCh37	5	180041110	180041110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	167	1389	2	ENST00000261937.6:c.3289G>A	p.Val1097Met	p.V1097M	ENST00000261937	NM_182925.4	1097	Gtg/Atg																																																																														
CBL	0	MSKCC	GRCh37	11	119167662	119167662	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	36	617	1	ENST00000264033.4:c.2071C>T	p.Gln691Ter	p.Q691*	ENST00000264033	NM_005188.3	691	Caa/Taa																																																																														
CCNE1	0	MSKCC	GRCh37	19	30308047	30308064	+	inframe_deletion	In_Frame_Del	DEL	TGGGACAATAATGCAGTC	TGGGACAATAATGCAGTC	-			P-0022086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	61	567	0	ENST00000262643.3:c.186_203del	p.Trp62_Val67del	p.W62_V67del	ENST00000262643	NM_001238.2	62	TGGGACAATAATGCAGTC/-																																																																														
PMS2	0	MSKCC	GRCh37	7	6043687	6043687	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0022086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	95	492	0	ENST00000265849.7:c.166C>A	p.Leu56Ile	p.L56I	ENST00000265849	NM_000535.5	56	Cta/Ata																																																																														
TCEB1	0	MSKCC	GRCh37	8	74868172	74868172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022086-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	13	145	0	ENST00000284811.8:c.122C>G	p.Thr41Arg	p.T41R	ENST00000284811		41	aCg/aGg																																																																														
GATA3	0	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	205	646	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794494	242794494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	115	835	0	ENST00000334409.5:c.448G>C	p.Glu150Gln	p.E150Q	ENST00000334409	NM_005018.2	150	Gaa/Caa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274121	10274121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	35	720	0	ENST00000330684.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000330684	NM_001134407.1	50	Gaa/Aaa																																																																														
MTOR	0	MSKCC	GRCh37	1	11181402	11181402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	120	835	0	ENST00000361445.4:c.6834G>C	p.Leu2278Phe	p.L2278F	ENST00000361445	NM_004958.3	2278	ttG/ttC																																																																														
JAK1	0	MSKCC	GRCh37	1	65307165	65307165	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	35	541	0	ENST00000342505.4:c.2523C>G	p.Ile841Met	p.I841M	ENST00000342505	NM_002227.2	841	atC/atG																																																																														
TP53	0	MSKCC	GRCh37	17	7578445	7578450	+	inframe_deletion	In_Frame_Del	DEL	ATGGCC	ATGGCC	-			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	137	843	0	ENST00000269305.4:c.480_485del	p.Met160_Ala161del	p.M160_A161del	ENST00000269305	NM_001126112.2	160	atGGCCATc/atc																																																																														
AXL	0	MSKCC	GRCh37	19	41762481	41762481	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	35	582	0	ENST00000301178.4:c.2161C>G	p.Leu721Val	p.L721V	ENST00000301178	NM_021913.4	721	Cta/Gta																																																																														
MSH6	0	MSKCC	GRCh37	2	48027227	48027227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	28	538	0	ENST00000234420.5:c.2105C>T	p.Ser702Leu	p.S702L	ENST00000234420	NM_000179.2	702	tCa/tTa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921404	178921404	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	44	750	0	ENST00000263967.3:c.886C>G	p.Gln296Glu	p.Q296E	ENST00000263967	NM_006218.2	296	Caa/Gaa																																																																														
NSD1	0	MSKCC	GRCh37	5	176562347	176562347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	49	770	0	ENST00000439151.2:c.243G>A	p.Met81Ile	p.M81I	ENST00000439151	NM_022455.4	81	atG/atA																																																																														
NSD1	0	MSKCC	GRCh37	5	176562849	176562849	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	46	663	0	ENST00000439151.2:c.745G>T	p.Glu249Ter	p.E249*	ENST00000439151	NM_022455.4	249	Gaa/Taa																																																																														
PRDM1	0	MSKCC	GRCh37	6	106552870	106552870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	1353	844	0	ENST00000369096.4:c.835G>C	p.Asp279His	p.D279H	ENST00000369096	NM_001198.3	279	Gac/Cac																																																																														
ESR1	0	MSKCC	GRCh37	6	152129319	152129319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	53	634	0	ENST00000206249.3:c.272C>G	p.Ser91Cys	p.S91C	ENST00000206249	NM_000125.3	91	tCc/tGc																																																																														
BCOR	0	MSKCC	GRCh37	X	39913151	39913151	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	22	429	0	ENST00000378444.4:c.4964C>G	p.Ser1655Cys	p.S1655C	ENST00000378444	NM_001123385.1	1655	tCt/tGt																																																																														
BCOR	0	MSKCC	GRCh37	X	39922945	39922945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022231-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	73	814	0	ENST00000378444.4:c.3763G>A	p.Glu1255Lys	p.E1255K	ENST00000378444	NM_001123385.1	1255	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	898	642	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	212	617	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	416	651	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CARD11	0	MSKCC	GRCh37	7	2984021	2984021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	26	725	1	ENST00000396946.4:c.509G>A	p.Arg170His	p.R170H	ENST00000396946	NM_032415.4	170	cGc/cAc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778441	3778470	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	GCTGCTGCTGCTGCAGCAGCTGCCTCCGTA	GCTGCTGCTGCTGCAGCAGCTGCCTCCGTA	-			P-0022373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	372	946	2	ENST00000262367.5:c.6578_6607del	p.Leu2193_Gln2203delinsTer	p.L2193_Q2203delins*	ENST00000262367	NM_004380.2	2193	tTACGGAGGCAGCTGCTGCAGCAGCAGCAGCaa/taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	209	607	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577145	7577148	+	frameshift_variant	Frame_Shift_Del	DEL	GTAG	GTAG	-			P-0022052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	329	664	0	ENST00000269305.4:c.790_793del	p.Leu264TrpfsTer80	p.L264Wfs*80	ENST00000269305	NM_001126112.2	264	CTACtg/tg																																																																														
ERBB2	0	MSKCC	GRCh37	17	37872012	37872012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3343	426	787	0	ENST00000269571.5:c.1333C>A	p.Leu445Met	p.L445M	ENST00000269571		445	Ctg/Atg																																																																														
RUNX1	0	MSKCC	GRCh37	21	36259259	36259260	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0022052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	305	453	0	ENST00000300305.3:c.230_231dup	p.Met78AlafsTer45	p.M78Afs*45	ENST00000300305		77	-/GC																																																																														
NSD1	0	MSKCC	GRCh37	5	176722068	176722068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022052-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	287	492	0	ENST00000439151.2:c.7699C>T	p.Pro2567Ser	p.P2567S	ENST00000439151	NM_022455.4	2567	Cca/Tca																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	802	830	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
RB1	0	MSKCC	GRCh37	13	48939046	48939052	+	frameshift_variant	Frame_Shift_Del	DEL	TCAAAAA	TCAAAAA	-			P-0022020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	164	531	2	ENST00000267163.4:c.879_885del	p.Lys294LeufsTer5	p.K294Lfs*5	ENST00000267163	NM_000321.2	293	tTCAAAAAt/tt																																																																														
EP300	0	MSKCC	GRCh37	22	41556657	41556657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	284	787	1	ENST00000263253.7:c.3602G>A	p.Cys1201Tyr	p.C1201Y	ENST00000263253	NM_001429.3	1201	tGt/tAt																																																																														
AGO2	0	MSKCC	GRCh37	8	141595361	141595361	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	151	900	0	ENST00000220592.5:c.72G>C	p.Lys24Asn	p.K24N	ENST00000220592	NM_012154.3	24	aaG/aaC																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	107	816	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0022128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	187	770	0	ENST00000269305.4:c.716_718dup	p.Asn239dup	p.N239dup	ENST00000269305	NM_001126112.2	239	agt/aACAgt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44935940	44935940	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0022128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	43	211	0	ENST00000377967.4:c.2703-2A>G		p.X901_splice	ENST00000377967	NM_021140.2	901																																																																															
RNF43	0	MSKCC	GRCh37	17	56492891	56492891	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	21	400	0	ENST00000407977.2:c.48del	p.Leu17Ter	p.L17*	ENST00000407977		16	ctG/ct																																																																														
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0022068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	244	809	0	ENST00000269305.4:c.672+1delG		p.X224_splice	ENST00000269305	NM_001126112.2	224																																																																															
NOTCH2	0	MSKCC	GRCh37	1	120466300	120466300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	46	622	0	ENST00000256646.2:c.4819C>T	p.Arg1607Cys	p.R1607C	ENST00000256646	NM_024408.3	1607	Cgc/Tgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432738	49432738	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	156	685	0	ENST00000301067.7:c.8401C>T	p.Arg2801Ter	p.R2801*	ENST00000301067	NM_003482.3	2801	Cga/Tga																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858130	9858130	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	66	775	0	ENST00000330684.3:c.3271G>C	p.Ala1091Pro	p.A1091P	ENST00000330684	NM_001134407.1	1091	Gcc/Ccc																																																																														
CTCF	0	MSKCC	GRCh37	16	67645342	67645342	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	51	505	0	ENST00000264010.4:c.607A>G	p.Lys203Glu	p.K203E	ENST00000264010	NM_006565.3	203	Aaa/Gaa																																																																														
CTCF	0	MSKCC	GRCh37	16	67645355	67645355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	51	480	0	ENST00000264010.4:c.620C>G	p.Thr207Ser	p.T207S	ENST00000264010	NM_006565.3	207	aCc/aGc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821274	72821274	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143760732		P-0022068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	134	663	0	ENST00000268489.5:c.10901C>T	p.Pro3634Leu	p.P3634L	ENST00000268489	NM_006885.3	3634	cCt/cTt																																																																														
MDC1	0	MSKCC	GRCh37	6	30679698	30679698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	82	791	0	ENST00000376406.3:c.2021G>A	p.Arg674Lys	p.R674K	ENST00000376406	NM_014641.2	674	aGa/aAa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	102	503	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	71	556	0				ENST00000310581	NM_198253.2																																																																																
SMARCB1	6598	MSKCC	GRCh37	22	24175836	24175837	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0022293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	93	642	0	ENST00000263121.7:c.1066_1067del	p.Leu356AspfsTer4	p.L356Dfs*4	ENST00000263121	NM_003073.3	355	aCT/a																																																																														
RIT1	0	MSKCC	GRCh37	1	155880473	155880473	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022293-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	129	652	1	ENST00000368323.3:c.80T>A	p.Leu27Gln	p.L27Q	ENST00000368323	NM_006912.5	27	cTg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0022145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	57	837	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0022145-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	83	794	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDH1	0	MSKCC	GRCh37	16	68842623	68842623	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	104	673	0	ENST00000261769.5:c.560del	p.Lys187ArgfsTer28	p.K187Rfs*28	ENST00000261769	NM_004360.3	187	Aag/ag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212426693	212426693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	76	568	0	ENST00000342788.4:c.2422G>A	p.Val808Ile	p.V808I	ENST00000342788	NM_005235.2	808	Gtc/Atc																																																																														
RICTOR	0	MSKCC	GRCh37	5	38947443	38947443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	31	412	0	ENST00000357387.3:c.4237G>T	p.Val1413Leu	p.V1413L	ENST00000357387	NM_152756.3	1413	Gtg/Ttg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	566	582	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43724799	43724799	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	619	650	0	ENST00000382044.4:c.3268C>T	p.Gln1090Ter	p.Q1090*	ENST00000382044	NM_001141980.1	1090	Cag/Tag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15967400	15967400	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	260	486	1	ENST00000268712.3:c.5203G>T	p.Asp1735Tyr	p.D1735Y	ENST00000268712	NM_006311.3	1735	Gac/Tac																																																																														
AXIN2	0	MSKCC	GRCh37	17	63532630	63532630	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199719878		P-0022061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	72	660	2	ENST00000307078.5:c.1949G>A	p.Arg650His	p.R650H	ENST00000307078	NM_004655.3	650	cGc/cAc																																																																														
APC	0	MSKCC	GRCh37	5	112173723	112173726	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0022061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	358	375	0	ENST00000257430.4:c.2434_2437del	p.Asp812IlefsTer7	p.D812Ifs*7	ENST00000257430	NM_000038.5	811	tCAGAc/tc																																																																														
APC	0	MSKCC	GRCh37	5	112175399	112175399	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	193	326	0	ENST00000257430.4:c.4108A>T	p.Lys1370Ter	p.K1370*	ENST00000257430	NM_000038.5	1370	Aaa/Taa																																																																														
ARID2	0	MSKCC	GRCh37	12	46245476	46245476	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022089-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	54	392	0	ENST00000334344.6:c.3572del	p.Asn1191MetfsTer13	p.N1191Mfs*13	ENST00000334344	NM_152641.2	1190	ggA/gg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	571	667	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	139	521	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576120	88576120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147160868		P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	201	761	2	ENST00000360948.2:c.1553G>A	p.Arg518His	p.R518H	ENST00000360948	NM_001012338.2	518	cGt/cAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	243	761	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
FLT4	0	MSKCC	GRCh37	5	180053141	180053141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	70	608	0	ENST00000261937.6:c.1228C>T	p.Arg410Cys	p.R410C	ENST00000261937	NM_182925.4	410	Cgc/Tgc																																																																														
PRDM14	0	MSKCC	GRCh37	8	70980712	70980712	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	105	628	0	ENST00000276594.2:c.754+2T>C		p.X252_splice	ENST00000276594	NM_024504.3	252																																																																															
MYC	0	MSKCC	GRCh37	8	128750776	128750776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022027-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	85	534	0	ENST00000377970.2:c.313G>A	p.Gly105Ser	p.G105S	ENST00000377970	NM_002467.4	105	Ggc/Agc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0022059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			49	143	848	4	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
FH	0	MSKCC	GRCh37	1	241671989	241671989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			160	45	710	2	ENST00000366560.3:c.652C>A	p.Leu218Ile	p.L218I	ENST00000366560	NM_000143.3	218	Ctt/Att																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857787	9857787	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	108	653	0	ENST00000330684.3:c.3614A>T	p.Glu1205Val	p.E1205V	ENST00000330684	NM_001134407.1	1205	gAg/gTg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929095	44929095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	54	616	0	ENST00000377967.4:c.2195G>A	p.Arg732Lys	p.R732K	ENST00000377967	NM_021140.2	732	aGg/aAg																																																																														
RET	0	MSKCC	GRCh37	10	43601926	43601926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	433	797	0	ENST00000355710.3:c.970T>A	p.Trp324Arg	p.W324R	ENST00000355710	NM_020975.4	324	Tgg/Agg																																																																														
CHEK1	0	MSKCC	GRCh37	11	125513686	125513686	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	52	420	0	ENST00000428830.2:c.815-1G>T		p.X272_splice	ENST00000428830	NM_001114121.2	272																																																																															
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	381	787	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	475	806	0	ENST00000269305.4:c.481del	p.Ala161ProfsTer9	p.A161Pfs*9	ENST00000269305	NM_001126112.2	161	Gcc/cc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	69	567	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
RASA1	0	MSKCC	GRCh37	5	86633847	86633847	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	29	518	0	ENST00000274376.6:c.956G>A	p.Trp319Ter	p.W319*	ENST00000274376	NM_002890.2	319	tGg/tAg																																																																														
ATRX	0	MSKCC	GRCh37	X	76938965	76938965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022033-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	53	808	0	ENST00000373344.5:c.1783C>A	p.Leu595Ile	p.L595I	ENST00000373344	NM_000489.3	595	Ctt/Att																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	118	779	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	151	953	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	69	806	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	69	806	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	69	806	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																																																														
GATA2	0	MSKCC	GRCh37	3	128200151	128200151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	151	928	2	ENST00000341105.2:c.1154C>T	p.Pro385Leu	p.P385L	ENST00000341105	NM_032638.4	385	cCa/cTa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198265007	198265007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	102	608	0	ENST00000335508.6:c.2870G>T	p.Arg957Leu	p.R957L	ENST00000335508	NM_012433.2	957	cGa/cTa																																																																														
MAX	0	MSKCC	GRCh37	14	65560451	65560451	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	143	649	1	ENST00000358664.4:c.146C>A	p.Ser49Ter	p.S49*	ENST00000358664	NM_002382.4	49	tCa/tAa																																																																														
MGA	0	MSKCC	GRCh37	15	42058313	42058313	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	70	548	0	ENST00000219905.7:c.8033G>T	p.Ser2678Ile	p.S2678I	ENST00000219905	NM_001164273.1	2678	aGc/aTc																																																																														
PALB2	0	MSKCC	GRCh37	16	23647077	23647077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	194	1155	0	ENST00000261584.4:c.790C>T	p.His264Tyr	p.H264Y	ENST00000261584	NM_024675.3	264	Cac/Tac																																																																														
RAD51D	0	MSKCC	GRCh37	17	33430565	33430566	+	splice_acceptor_variant,intron_variant	Splice_Site	DNP	TG	TG	AT			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	103	740	2	ENST00000335858.7:c.241-3_241-2delinsAT		p.X81_splice	ENST00000335858	NM_133629.2	81																																																																															
PIK3C3	0	MSKCC	GRCh37	18	39570515	39570515	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	29	511	0	ENST00000262039.4:c.711A>T	p.Glu237Asp	p.E237D	ENST00000262039	NM_002647.2	237	gaA/gaT																																																																														
SF3B1	0	MSKCC	GRCh37	2	198264996	198264996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	100	604	0	ENST00000335508.6:c.2881G>T	p.Val961Phe	p.V961F	ENST00000335508	NM_012433.2	961	Gtc/Ttc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198265019	198265019	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	108	628	0	ENST00000335508.6:c.2858A>C	p.Asp953Ala	p.D953A	ENST00000335508	NM_012433.2	953	gAc/gCc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56179414	56179414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	122	529	0	ENST00000399503.3:c.3727T>C	p.Trp1243Arg	p.W1243R	ENST00000399503	NM_005921.1	1243	Tgg/Cgg																																																																														
RBM10	0	MSKCC	GRCh37	X	47044499	47044499	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0022186-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	144	967	0	ENST00000329236.7:c.1762A>T	p.Lys588Ter	p.K588*	ENST00000329236	NM_001204466.1	588	Aaa/Taa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0022177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	271	533	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
EZH2	0	MSKCC	GRCh37	7	148508728	148508728	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	304	612	0	ENST00000320356.2:c.1936T>A	p.Tyr646Asn	p.Y646N	ENST00000320356	NM_004456.4	646	Tac/Aac																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281203	15281203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	186	864	1	ENST00000263388.2:c.5053G>A	p.Asp1685Asn	p.D1685N	ENST00000263388	NM_000435.2	1685	Gac/Aac																																																																														
ALK	0	MSKCC	GRCh37	2	29917787	29917787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	174	716	2	ENST00000389048.3:c.881C>T	p.Pro294Leu	p.P294L	ENST00000389048	NM_004304.4	294	cCc/cTc																																																																														
MTOR	0	MSKCC	GRCh37	1	11303267	11303267	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	178	726	0	ENST00000361445.4:c.1316T>C	p.Leu439Pro	p.L439P	ENST00000361445	NM_004958.3	439	cTa/cCa																																																																														
IGF2	0	MSKCC	GRCh37	11	2156744	2156744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	139	613	0	ENST00000434045.2:c.178C>T	p.Pro60Ser	p.P60S	ENST00000434045	NM_001127598.1	60	Cca/Tca																																																																														
BRCA2	0	MSKCC	GRCh37	13	32893340	32893340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	156	623	0	ENST00000380152.3:c.194C>T	p.Pro65Leu	p.P65L	ENST00000380152		65	cCa/cTa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911425	32911425	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	98	469	0	ENST00000380152.3:c.2933A>T	p.Asn978Ile	p.N978I	ENST00000380152		978	aAt/aTt																																																																														
HGF	0	MSKCC	GRCh37	7	81372693	81372693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022177-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	204	466	0	ENST00000222390.5:c.841G>A	p.Glu281Lys	p.E281K	ENST00000222390	NM_000601.4	281	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	243	672	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856394	111856394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	107	216	0	ENST00000341259.2:c.445C>T	p.Arg149Cys	p.R149C	ENST00000341259	NM_005475.2	149	Cgc/Tgc																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49281855	49281855	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	138	691	0	ENST00000282018.3:c.902A>C	p.Asn301Thr	p.N301T	ENST00000282018	NM_020377.2	301	aAt/aCt																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061023	38061024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0022117-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	52	362	0	ENST00000250448.2:c.964_965dup	p.Pro324ArgfsTer27	p.P324Rfs*27	ENST00000250448	NM_004496.3	322	ggc/ggGGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	204	654	1	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107180	27107180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	69	602	0	ENST00000324856.7:c.6791C>T	p.Ser2264Leu	p.S2264L	ENST00000324856	NM_006015.4	2264	tCa/tTa																																																																														
NTRK1	0	MSKCC	GRCh37	1	156845900	156845900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	108	713	0	ENST00000524377.1:c.1530C>G	p.Ile510Met	p.I510M	ENST00000524377	NM_002529.3	510	atC/atG																																																																														
MEN1	0	MSKCC	GRCh37	11	64572084	64572084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	63	575	1	ENST00000337652.1:c.1570C>A	p.Pro524Thr	p.P524T	ENST00000337652	NM_130803.2	524	Cct/Act																																																																														
MEN1	0	MSKCC	GRCh37	11	64573799	64573799	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	72	685	0	ENST00000337652.1:c.969C>G	p.Ile323Met	p.I323M	ENST00000337652	NM_130803.2	323	atC/atG																																																																														
KDM5A	0	MSKCC	GRCh37	12	438185	438185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	88	377	0	ENST00000399788.2:c.1784G>C	p.Gly595Ala	p.G595A	ENST00000399788	NM_001042603.1	595	gGa/gCa																																																																														
TRAF7	0	MSKCC	GRCh37	16	2221334	2221334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	169	711	0	ENST00000326181.6:c.418G>C	p.Asp140His	p.D140H	ENST00000326181	NM_032271.2	140	Gac/Cac																																																																														
MYC	0	MSKCC	GRCh37	8	128752989	128752989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021975-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	53	469	0	ENST00000377970.2:c.1150G>C	p.Glu384Gln	p.E384Q	ENST00000377970	NM_002467.4	384	Gag/Cag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111504	8111505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	163	654	0	ENST00000346208.3:c.992dup	p.Asn331LysfsTer21	p.N331Kfs*21	ENST00000346208		330	-/A																																																																														
STK11	0	MSKCC	GRCh37	19	1220673	1220682	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTCCGGCT	TTCTCCGGCT	-			P-0021990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	150	661	0	ENST00000326873.7:c.692_701del	p.Phe231SerfsTer53	p.F231Sfs*53	ENST00000326873	NM_000455.4	231	TTCTCCGGCTtc/tc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	253	535	1				ENST00000310581	NM_198253.2																																																																																
RB1	0	MSKCC	GRCh37	13	48947596	48947596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	115	576	0	ENST00000267163.4:c.1183C>T	p.Gln395Ter	p.Q395*	ENST00000267163	NM_000321.2	395	Caa/Taa																																																																														
AXL	0	MSKCC	GRCh37	19	41743864	41743864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	370	689	0	ENST00000301178.4:c.799G>A	p.Asp267Asn	p.D267N	ENST00000301178	NM_021913.4	267	Gat/Aat																																																																														
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	512	873	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																																																														
TP53	0	MSKCC	GRCh37	17	7579331	7579331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	343	620	0	ENST00000269305.4:c.356C>G	p.Ala119Gly	p.A119G	ENST00000269305	NM_001126112.2	119	gCc/gGc																																																																														
SMAD2	0	MSKCC	GRCh37	18	45368239	45368239	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	243	630	0	ENST00000262160.6:c.1363C>T	p.Gln455Ter	p.Q455*	ENST00000262160	NM_005901.5	455	Cag/Tag																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870853	12870853	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	134	246	0	ENST00000228872.4:c.80C>A	p.Ser27Ter	p.S27*	ENST00000228872	NM_004064.3	27	tCg/tAg																																																																														
NUF2	0	MSKCC	GRCh37	1	163313556	163313556	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	117	463	1	ENST00000271452.3:c.703G>T	p.Glu235Ter	p.E235*	ENST00000271452	NM_145697.2	235	Gaa/Taa																																																																														
POLE	0	MSKCC	GRCh37	12	133226002	133226002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	417	743	0	ENST00000320574.5:c.3895G>A	p.Glu1299Lys	p.E1299K	ENST00000320574	NM_006231.2	1299	Gag/Aag																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871860	12871860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	166	264	0	ENST00000228872.4:c.577C>A	p.Leu193Ile	p.L193I	ENST00000228872	NM_004064.3	193	Ctc/Atc																																																																														
POLE	0	MSKCC	GRCh37	12	133219234	133219234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	308	694	1	ENST00000320574.5:c.4810G>T	p.Glu1604Ter	p.E1604*	ENST00000320574	NM_006231.2	1604	Gag/Tag																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906684	32906684	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	180	523	1	ENST00000380152.3:c.1069G>T	p.Glu357Ter	p.E357*	ENST00000380152		357	Gaa/Taa																																																																														
POLD1	0	MSKCC	GRCh37	19	50918141	50918141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	429	772	1	ENST00000440232.2:c.2458G>A	p.Ala820Thr	p.A820T	ENST00000440232	NM_002691.3	820	Gcc/Acc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827885	40827885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	1182	588	0	ENST00000373198.4:c.2543G>T	p.Gly848Val	p.G848V	ENST00000373198	NM_133170.3	848	gGa/gTa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21994146	21994146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	368	673	0	ENST00000361570.3:c.308G>A	p.Arg103Lys	p.R103K	ENST00000361570	NM_058195.3	103	aGa/aAa																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21994146	21994146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022244-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	368	673	0	ENST00000361570.3:c.308G>A	p.Arg103Lys	p.R103K	ENST00000361570	NM_058195.3	103	aGa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	117	545	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	415	681	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929487	44929487	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	198	356	0	ENST00000377967.4:c.2587C>T	p.Gln863Ter	p.Q863*	ENST00000377967	NM_021140.2	863	Cag/Tag																																																																														
FH	0	MSKCC	GRCh37	1	241676926	241676926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	230	612	0	ENST00000366560.3:c.355G>A	p.Ala119Thr	p.A119T	ENST00000366560	NM_000143.3	119	Gca/Aca																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	236	713	1	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag																																																																														
ERCC2	0	MSKCC	GRCh37	19	45871992	45871992	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	254	551	0	ENST00000391945.4:c.256G>C	p.Glu86Gln	p.E86Q	ENST00000391945	NM_000400.3	86	Gag/Cag																																																																														
LYN	0	MSKCC	GRCh37	8	56922550	56922550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	226	636	0	ENST00000519728.1:c.1420G>A	p.Asp474Asn	p.D474N	ENST00000519728	NM_002350.3	474	Gac/Aac																																																																														
RAD54L	0	MSKCC	GRCh37	1	46738442	46738442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	131	698	0	ENST00000371975.4:c.1343C>A	p.Ser448Tyr	p.S448Y	ENST00000371975	NM_003579.3	448	tCt/tAt																																																																														
VTCN1	0	MSKCC	GRCh37	1	117695961	117695961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	229	561	0	ENST00000369458.3:c.476A>G	p.Tyr159Cys	p.Y159C	ENST00000369458	NM_024626.3	159	tAt/tGt																																																																														
ELF3	0	MSKCC	GRCh37	1	201980347	201980347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	284	738	0	ENST00000359651.3:c.83C>T	p.Ser28Phe	p.S28F	ENST00000359651		28	tCt/tTt																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435505	18435505	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	33	322	0	ENST00000266497.5:c.490A>T	p.Asn164Tyr	p.N164Y	ENST00000266497		164	Aat/Tat																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18466935	18466935	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	86	570	0	ENST00000266497.5:c.1074T>A	p.Asp358Glu	p.D358E	ENST00000266497		358	gaT/gaA																																																																														
CREBBP	0	MSKCC	GRCh37	16	3830764	3830764	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	74	541	0	ENST00000262367.5:c.1792C>T	p.Gln598Ter	p.Q598*	ENST00000262367	NM_004380.2	598	Cag/Tag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351475	89351475	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	84	658	0	ENST00000301030.4:c.1475A>G	p.Asp492Gly	p.D492G	ENST00000301030	NM_001256183.1	492	gAc/gGc																																																																														
AURKB	0	MSKCC	GRCh37	17	8109939	8109939	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	91	616	0	ENST00000585124.1:c.556G>C	p.Asp186His	p.D186H	ENST00000585124	NM_004217.3	186	Gat/Cat																																																																														
MSI2	0	MSKCC	GRCh37	17	55334494	55334494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	241	483	0	ENST00000284073.2:c.98C>T	p.Ser33Leu	p.S33L	ENST00000284073	NM_138962.2	33	tCa/tTa																																																																														
UPF1	0	MSKCC	GRCh37	19	18963845	18963845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	126	677	0	ENST00000262803.5:c.1022G>A	p.Arg341Lys	p.R341K	ENST00000262803	NM_002911.3	341	aGa/aAa																																																																														
ERF	0	MSKCC	GRCh37	19	42753711	42753721	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCTCGGCCC	AGCCTCGGCCC	-			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	219	805	0	ENST00000222329.4:c.543_553del	p.Gly182SerfsTer3	p.G182Sfs*3	ENST00000222329	NM_006494.2	181	ctGGGCCGAGGCTca/ctca																																																																														
MYCN	0	MSKCC	GRCh37	2	16082436	16082436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	90	722	0	ENST00000281043.3:c.250G>A	p.Glu84Lys	p.E84K	ENST00000281043	NM_005378.4	84	Gag/Aag																																																																														
ASXL2	0	MSKCC	GRCh37	2	25967074	25967074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	104	604	0	ENST00000435504.4:c.2132G>A	p.Arg711Lys	p.R711K	ENST00000435504		711	aGa/aAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47162666	47162666	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	81	517	0	ENST00000409792.3:c.3460G>C	p.Asp1154His	p.D1154H	ENST00000409792	NM_014159.6	1154	Gat/Cat																																																																														
MST1R	0	MSKCC	GRCh37	3	49935084	49935084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	446	698	0	ENST00000296474.3:c.1915G>A	p.Glu639Lys	p.E639K	ENST00000296474	NM_002447.2	639	Gag/Aag																																																																														
ATR	0	MSKCC	GRCh37	3	142234248	142234248	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	99	536	1	ENST00000350721.4:c.4492C>A	p.Leu1498Ile	p.L1498I	ENST00000350721	NM_001184.3	1498	Ctt/Att																																																																														
RASA1	0	MSKCC	GRCh37	5	86670033	86670033	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	183	550	1	ENST00000274376.6:c.1833del	p.Phe611LeufsTer10	p.F611Lfs*10	ENST00000274376	NM_002890.2	610	caT/ca																																																																														
MET	0	MSKCC	GRCh37	7	116339698	116339698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	77	428	0	ENST00000397752.3:c.560C>G	p.Ser187Cys	p.S187C	ENST00000397752	NM_000245.2	187	tCt/tGt																																																																														
JAK2	0	MSKCC	GRCh37	9	5054660	5054660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	195	445	0	ENST00000381652.3:c.712C>T	p.Gln238Ter	p.Q238*	ENST00000381652	NM_004972.3	238	Cag/Tag																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900351	101900351	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	60	455	0	ENST00000374994.4:c.785T>A	p.Phe262Tyr	p.F262Y	ENST00000374994	NM_004612.2	262	tTt/tAt																																																																														
ABL1	0	MSKCC	GRCh37	9	133755991	133755991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	95	655	0	ENST00000318560.5:c.1618G>C	p.Glu540Gln	p.E540Q	ENST00000318560	NM_005157.4	540	Gag/Cag																																																																														
ABL1	0	MSKCC	GRCh37	9	133759395	133759395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	142	776	0	ENST00000318560.5:c.1718C>T	p.Pro573Leu	p.P573L	ENST00000318560	NM_005157.4	573	cCt/cTt																																																																														
MED12	0	MSKCC	GRCh37	X	70356231	70356231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022000-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	216	362	0	ENST00000374080.3:c.5126G>A	p.Arg1709Gln	p.R1709Q	ENST00000374080		1709	cGa/cAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	137	452	0				ENST00000310581	NM_198253.2																																																																																
KIT	0	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	670	554	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt																																																																														
ATM	0	MSKCC	GRCh37	11	108186556	108186556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	144	373	1	ENST00000278616.4:c.6013C>T	p.Leu2005Phe	p.L2005F	ENST00000278616	NM_000051.3	2005	Ctc/Ttc																																																																														
CBL	0	MSKCC	GRCh37	11	119149242	119149242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	244	639	0	ENST00000264033.4:c.1250C>T	p.Pro417Leu	p.P417L	ENST00000264033	NM_005188.3	417	cCt/cTt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156851421	156851421	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	224	755	0	ENST00000524377.1:c.2378A>C	p.Asp793Ala	p.D793A	ENST00000524377	NM_002529.3	793	gAt/gCt																																																																														
SMYD3	0	MSKCC	GRCh37	1	246091305	246091306	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	193	550	3	ENST00000388985.4:c.629_630delinsTT	p.Pro210Leu	p.P210L	ENST00000388985		210	cCC/cTT																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948375	71948375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	313	895	0	ENST00000298229.2:c.3087C>G	p.His1029Gln	p.H1029Q	ENST00000298229	NM_001567.3	1029	caC/caG																																																																														
MRE11A	0	MSKCC	GRCh37	11	94192645	94192645	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	205	685	2	ENST00000323929.3:c.1429C>T	p.Gln477Ter	p.Q477*	ENST00000323929	NM_005591.3	477	Cag/Tag																																																																														
BIRC3	0	MSKCC	GRCh37	11	102206798	102206798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	231	576	1	ENST00000263464.3:c.1426G>A	p.Glu476Lys	p.E476K	ENST00000263464	NM_001165.4	476	Gaa/Aaa																																																																														
ERBB3	0	MSKCC	GRCh37	12	56487653	56487653	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	228	653	0	ENST00000267101.3:c.1586G>C	p.Cys529Ser	p.C529S	ENST00000267101	NM_001982.3	529	tGt/tCt																																																																														
SH2B3	0	MSKCC	GRCh37	12	111856488	111856488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	105	388	0	ENST00000341259.2:c.539A>G	p.Lys180Arg	p.K180R	ENST00000341259	NM_005475.2	180	aAg/aGg																																																																														
POLE	0	MSKCC	GRCh37	12	133219437	133219437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	268	798	0	ENST00000320574.5:c.4697G>A	p.Arg1566Lys	p.R1566K	ENST00000320574	NM_006231.2	1566	aGa/aAa																																																																														
FOXO1	0	MSKCC	GRCh37	13	41134312	41134312	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	208	591	0	ENST00000379561.5:c.1316del	p.Ile439AsnfsTer14	p.I439Nfs*14	ENST00000379561	NM_002015.3	439	aTa/aa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67457424	67457424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	516	614	0	ENST00000327367.4:c.398C>T	p.Pro133Leu	p.P133L	ENST00000327367	NM_005902.3	133	cCa/cTa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3823777	3823777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150767375		P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	230	526	1	ENST00000262367.5:c.2438C>T	p.Pro813Leu	p.P813L	ENST00000262367	NM_004380.2	813	cCg/cTg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9923416	9923416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	261	747	0	ENST00000330684.3:c.1871G>A	p.Gly624Glu	p.G624E	ENST00000330684	NM_001134407.1	624	gGg/gAg																																																																														
RAD51C	0	MSKCC	GRCh37	17	56780664	56780665	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	220	684	1	ENST00000337432.4:c.679_680delinsTT	p.Pro227Leu	p.P227L	ENST00000337432	NM_058216.2	227	CCa/TTa																																																																														
RPTOR	0	MSKCC	GRCh37	17	78857767	78857767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	217	608	0	ENST00000306801.3:c.1837C>T	p.Pro613Ser	p.P613S	ENST00000306801	NM_020761.2	613	Ccc/Tcc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15289699	15289699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	307	805	2	ENST00000263388.2:c.3772G>A	p.Gly1258Arg	p.G1258R	ENST00000263388	NM_000435.2	1258	Gga/Aga																																																																														
BRD4	0	MSKCC	GRCh37	19	15374321	15374321	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	280	750	0	ENST00000263377.2:c.1251G>C	p.Glu417Asp	p.E417D	ENST00000263377	NM_058243.2	417	gaG/gaC																																																																														
KMT2B	0	MSKCC	GRCh37	19	36214137	36214137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	303	867	1	ENST00000222270.7:c.2963C>T	p.Pro988Leu	p.P988L	ENST00000222270	NM_014727.1	988	cCc/cTc																																																																														
ALK	0	MSKCC	GRCh37	2	29606708	29606708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	234	597	0	ENST00000389048.3:c.1172G>A	p.Gly391Glu	p.G391E	ENST00000389048	NM_004304.4	391	gGa/gAa																																																																														
SOS1	0	MSKCC	GRCh37	2	39214664	39214664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	244	703	3	ENST00000402219.2:c.3460C>A	p.Pro1154Thr	p.P1154T	ENST00000402219	NM_005633.3	1154	Cct/Act																																																																														
EPAS1	0	MSKCC	GRCh37	2	46607607	46607608	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	308	761	3	ENST00000263734.3:c.1796_1797delinsTT	p.Pro599Leu	p.P599L	ENST00000263734	NM_001430.4	599	cCC/cTT																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566701	212566701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	118	313	0	ENST00000342788.4:c.1480G>A	p.Glu494Lys	p.E494K	ENST00000342788	NM_005235.2	494	Gaa/Aaa																																																																														
PTPRT	0	MSKCC	GRCh37	20	41420092	41420093	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	121	330	0	ENST00000373198.4:c.228_229delinsAA	p.Met76_Val77delinsIleMet	p.M76_V77delinsIM	ENST00000373198	NM_133170.3	76	atGGtg/atAAtg																																																																														
RAF1	0	MSKCC	GRCh37	3	12626725	12626725	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	229	599	0	ENST00000251849.4:c.1564A>G	p.Asn522Asp	p.N522D	ENST00000251849	NM_002880.3	522	Aac/Gac																																																																														
PBRM1	0	MSKCC	GRCh37	3	52643768	52643768	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	300	694	0	ENST00000394830.3:c.2128C>G	p.Arg710Gly	p.R710G	ENST00000394830	NM_018313.4	710	Cga/Gga																																																																														
MITF	0	MSKCC	GRCh37	3	70014127	70014629	+	stop_lost,3_prime_UTR_variant	Nonstop_Mutation	DEL	CAGCATCATGCAGACCTAACCTGTACAACAACTCTCGATCTCACGGATGGCACCATCACCTTCAACAACAACCTCGGAACTGGGACTGAGGCCAACCAAGCCTATAGTGTCCCCACAAAAATGGGATCCAAACTGGAAGACATCCTGATGGACGACACCCTTTCTCCCGTCGGTGTCACTGATCCACTCCTTTCCTCAGTGTCCCCCGGAGCTTCCAAAACAAGCAGCCGGAGGAGCAGTATGAGCATGGAAGAGACGGAGCACACTTGTTAGCGAATCCTCCCTGCACTGCATTCGCACAAACTGCTTCCTTTCTTGATTCGTAGATTTAATAACTTACCTGAAGGGGTTTTCTTGATAATTTTCCTTTAATATGAAATTTTTTTTCATGCTTTATCAATAGCCCAGGATATATTTTATTTTTAGAATTTTGTGAAACAGACTTGTATATTCTATTTTACAACTACAAATGCCTCCAAAGTATTGTACAAATAAGTGTGCAG	CAGCATCATGCAGACCTAACCTGTACAACAACTCTCGATCTCACGGATGGCACCATCACCTTCAACAACAACCTCGGAACTGGGACTGAGGCCAACCAAGCCTATAGTGTCCCCACAAAAATGGGATCCAAACTGGAAGACATCCTGATGGACGACACCCTTTCTCCCGTCGGTGTCACTGATCCACTCCTTTCCTCAGTGTCCCCCGGAGCTTCCAAAACAAGCAGCCGGAGGAGCAGTATGAGCATGGAAGAGACGGAGCACACTTGTTAGCGAATCCTCCCTGCACTGCATTCGCACAAACTGCTTCCTTTCTTGATTCGTAGATTTAATAACTTACCTGAAGGGGTTTTCTTGATAATTTTCCTTTAATATGAAATTTTTTTTCATGCTTTATCAATAGCCCAGGATATATTTTATTTTTAGAATTTTGTGAAACAGACTTGTATATTCTATTTTACAACTACAAATGCCTCCAAAGTATTGTACAAATAAGTGTGCAG	-			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	649	130	0	ENST00000352241.4:c.1291_*230del		p.*431*	ENST00000352241	NM_198159.2	431																																																																															
EPHA3	0	MSKCC	GRCh37	3	89390923	89390923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	179	488	0	ENST00000336596.2:c.989G>A	p.Arg330Lys	p.R330K	ENST00000336596	NM_005233.5	330	aGa/aAa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89457270	89457270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	132	507	5	ENST00000336596.2:c.1751G>A	p.Gly584Asp	p.G584D	ENST00000336596	NM_005233.5	584	gGc/gAc																																																																														
TP63	0	MSKCC	GRCh37	3	189612277	189612277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	151	402	0	ENST00000264731.3:c.2029G>A	p.Glu677Lys	p.E677K	ENST00000264731	NM_003722.4	677	Gag/Aag																																																																														
WHSC1	0	MSKCC	GRCh37	4	1959680	1959680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	134	381	0	ENST00000382891.5:c.2902C>T	p.Arg968Cys	p.R968C	ENST00000382891	NM_133335.3	968	Cgt/Tgt																																																																														
APC	0	MSKCC	GRCh37	5	112178465	112178465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	169	466	0	ENST00000257430.4:c.7174C>T	p.Pro2392Ser	p.P2392S	ENST00000257430	NM_000038.5	2392	Cca/Tca																																																																														
NSD1	0	MSKCC	GRCh37	5	176562391	176562391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	281	735	1	ENST00000439151.2:c.287C>T	p.Ser96Phe	p.S96F	ENST00000439151	NM_022455.4	96	tCc/tTc																																																																														
MDC1	0	MSKCC	GRCh37	6	30673255	30673256	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	153	550	0	ENST00000376406.3:c.3704_3705delinsTT	p.Ser1235Phe	p.S1235F	ENST00000376406	NM_014641.2	1235	tCC/tTT																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32187506	32187506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	254	826	0	ENST00000375023.3:c.1373C>T	p.Ser458Phe	p.S458F	ENST00000375023	NM_004557.3	458	tCc/tTc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157099313	157099333	+	inframe_deletion	In_Frame_Del	DEL	CACCACCACCACCACCATGCC	CACCACCACCACCACCATGCC	-			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	24	456	0	ENST00000346085.5:c.278_298delACCACCACCATGCCCACCACC	p.His93_His99del	p.H93_H99del	ENST00000346085	NM_020732.3	84	CACCACCACCACCACCATGCC/-																																																																														
EZH2	0	MSKCC	GRCh37	7	148523695	148523695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	285	416	0	ENST00000320356.2:c.758C>T	p.Pro253Leu	p.P253L	ENST00000320356	NM_004456.4	253	cCa/cTa																																																																														
PAX5	0	MSKCC	GRCh37	9	36846914	36846914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	190	581	3	ENST00000358127.4:c.1025C>T	p.Ser342Phe	p.S342F	ENST00000358127	NM_001280556.1	342	tCc/tTc																																																																														
EIF1AX	0	MSKCC	GRCh37	X	20156728	20156728	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	243	253	0	ENST00000379607.5:c.29A>T	p.Lys10Ile	p.K10I	ENST00000379607	NM_001412.3	10	aAa/aTa																																																																														
TP53	0	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	190	746	0	ENST00000269305.4:c.321C>G	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taG																																																																														
STK11	0	MSKCC	GRCh37	19	1222982	1222982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	268	558	1	ENST00000326873.7:c.921-2A>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																																																															
SOS1	0	MSKCC	GRCh37	2	39281778	39281778	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	75	443	0	ENST00000402219.2:c.697A>T	p.Asn233Tyr	p.N233Y	ENST00000402219	NM_005633.3	233	Aat/Tat																																																																														
JUN	0	MSKCC	GRCh37	1	59248397	59248397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	99	397	1	ENST00000371222.2:c.346C>T	p.Arg116Cys	p.R116C	ENST00000371222	NM_002228.3	116	Cgc/Tgc																																																																														
MRE11A	0	MSKCC	GRCh37	11	94180599	94180599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	85	478	0	ENST00000323929.3:c.1569G>T	p.Met523Ile	p.M523I	ENST00000323929	NM_005591.3	523	atG/atT																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12870945	12870977	+	inframe_deletion	In_Frame_Del	DEL	CGCAAGTGGAATTTCGATTTTCAGAATCACAAA	CGCAAGTGGAATTTCGATTTTCAGAATCACAAA	-			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	68	325	0	ENST00000228872.4:c.173_205del	p.Arg58_Lys68del	p.R58_K68del	ENST00000228872	NM_004064.3	58	CGCAAGTGGAATTTCGATTTTCAGAATCACAAA/-																																																																														
B2M	0	MSKCC	GRCh37	15	45003734	45003748	+	start_lost,5_prime_UTR_variant	Translation_Start_Site	DEL	TTCGGGCCGAGATGT	TTCGGGCCGAGATGT	-			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	464	85	0	ENST00000558401.1:c.-11_4del		p.*4*	ENST00000558401	NM_004048.2	4																																																																															
PPP2R1A	0	MSKCC	GRCh37	19	52714651	52714651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	171	711	1	ENST00000322088.6:c.409G>T	p.Gly137Cys	p.G137C	ENST00000322088	NM_014225.5	137	Ggc/Tgc																																																																														
MSH6	0	MSKCC	GRCh37	2	48010475	48010475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	155	610	0	ENST00000234420.5:c.103G>T	p.Ala35Ser	p.A35S	ENST00000234420	NM_000179.2	35	Gcc/Tcc																																																																														
MET	0	MSKCC	GRCh37	7	116415121	116415121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	153	646	2	ENST00000397752.3:c.3215G>T	p.Gly1072Val	p.G1072V	ENST00000397752	NM_000245.2	1072	gGg/gTg																																																																														
ABL1	0	MSKCC	GRCh37	9	133759407	133759407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	173	746	1	ENST00000318560.5:c.1730G>T	p.Arg577Leu	p.R577L	ENST00000318560	NM_005157.4	577	cGa/cTa																																																																														
PTPRS	0	MSKCC	GRCh37	19	5238941	5238941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	72	493	0	ENST00000357368.4:c.1838C>T	p.Thr613Met	p.T613M	ENST00000357368	NM_002850.3	613	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	391	999	2	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737142	145737142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61755067		P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	229	894	1	ENST00000428558.2:c.3424G>A	p.Asp1142Asn	p.D1142N	ENST00000428558	NM_004260.3	1142	Gac/Aac																																																																														
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	427	824	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																																																														
INPPL1	0	MSKCC	GRCh37	11	71941184	71941184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	170	867	0	ENST00000298229.2:c.959T>C	p.Leu320Pro	p.L320P	ENST00000298229	NM_001567.3	320	cTg/cCg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817751	3817751	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	171	699	0	ENST00000262367.5:c.3220T>C	p.Ser1074Pro	p.S1074P	ENST00000262367	NM_004380.2	1074	Tca/Cca																																																																														
ERCC2	0	MSKCC	GRCh37	19	45864832	45864832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	253	1115	1	ENST00000391945.4:c.1187C>T	p.Pro396Leu	p.P396L	ENST00000391945	NM_000400.3	396	cCg/cTg																																																																														
RTEL1	0	MSKCC	GRCh37	20	62311242	62311242	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	154	523	0	ENST00000508582.2:c.1150C>G	p.Gln384Glu	p.Q384E	ENST00000508582		384	Cag/Gag																																																																														
PLK2	0	MSKCC	GRCh37	5	57755533	57755533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	326	688	0	ENST00000274289.3:c.254G>A	p.Gly85Asp	p.G85D	ENST00000274289	NM_006622.3	85	gGc/gAc																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5534978	5534978	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201840318		P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	163	536	1	ENST00000397747.3:c.289G>A	p.Glu97Lys	p.E97K	ENST00000397747	NM_025239.3	97	Gaa/Aaa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139397675	139397675	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022084-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	142	855	0	ENST00000277541.6:c.5126T>C	p.Leu1709Pro	p.L1709P	ENST00000277541	NM_017617.3	1709	cTg/cCg																																																																														
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	65	528	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	41	479	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	49	379	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	56	668	2	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																																																														
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	34	352	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	47	497	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
TET2	0	MSKCC	GRCh37	4	106197255	106197255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	45	310	0	ENST00000380013.4:c.5588C>T	p.Ala1863Val	p.A1863V	ENST00000380013	NM_001127208.2	1863	gCc/gTc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	78	576	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																																																														
INPP4A	0	MSKCC	GRCh37	2	99154326	99154326	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	58	364	0	ENST00000074304.5:c.468G>T	p.Arg156Ser	p.R156S	ENST00000074304	NM_001134224.1	156	agG/agT																																																																														
BCOR	0	MSKCC	GRCh37	X	39931788	39931788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	84	338	0	ENST00000378444.4:c.2811del	p.Thr938ProfsTer18	p.T938Pfs*18	ENST00000378444	NM_001123385.1	937	ccC/cc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	29	339	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																																																														
POLD1	0	MSKCC	GRCh37	19	50905546	50905546	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144979965		P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	106	738	3	ENST00000440232.2:c.674G>A	p.Arg225His	p.R225H	ENST00000440232	NM_002691.3	225	cGt/cAt																																																																														
AXL	0	MSKCC	GRCh37	19	41743988	41743988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1102	86	918	3	ENST00000301178.4:c.923G>A	p.Arg308His	p.R308H	ENST00000301178	NM_021913.4	308	cGc/cAc																																																																														
AURKB	0	MSKCC	GRCh37	17	8108653	8108653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	61	620	1	ENST00000585124.1:c.742C>T	p.Arg248Cys	p.R248C	ENST00000585124	NM_004217.3	248	Cgc/Tgc																																																																														
ATM	0	MSKCC	GRCh37	11	108200961	108200961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	52	390	0	ENST00000278616.4:c.7328G>A	p.Arg2443Gln	p.R2443Q	ENST00000278616	NM_000051.3	2443	cGa/cAa																																																																														
MSH6	0	MSKCC	GRCh37	2	48026204	48026204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	42	420	0	ENST00000234420.5:c.1082G>A	p.Arg361His	p.R361H	ENST00000234420	NM_000179.2	361	cGc/cAc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	49	380	2	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																																																														
NEGR1	0	MSKCC	GRCh37	1	72076826	72076826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	36	364	1	ENST00000357731.5:c.671C>T	p.Ala224Val	p.A224V	ENST00000357731	NM_173808.2	224	gCt/gTt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3779158	3779158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			830	49	558	2	ENST00000262367.5:c.5890C>T	p.Arg1964Cys	p.R1964C	ENST00000262367	NM_004380.2	1964	Cgt/Tgt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480469	89480469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	39	342	0	ENST00000336596.2:c.2306G>A	p.Arg769His	p.R769H	ENST00000336596	NM_005233.5	769	cGt/cAt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27105892	27105892	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	54	446	0	ENST00000324856.7:c.5503C>T	p.Gln1835Ter	p.Q1835*	ENST00000324856	NM_006015.4	1835	Cag/Tag																																																																														
CARD11	0	MSKCC	GRCh37	7	2946355	2946355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	89	808	3	ENST00000396946.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000396946	NM_032415.4	1128	Gta/Ata																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281256	15281256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	77	810	0	ENST00000263388.2:c.5000G>A	p.Arg1667His	p.R1667H	ENST00000263388	NM_000435.2	1667	cGc/cAc																																																																														
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	47	431	2	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																																																														
MAPK3	0	MSKCC	GRCh37	16	30128009	30128009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	77	724	1	ENST00000263025.4:c.1120G>A	p.Gly374Arg	p.G374R	ENST00000263025	NM_002746.2	374	Gga/Aga																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495016	56495016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	161	617	2	ENST00000267101.3:c.3373C>T	p.Arg1125Trp	p.R1125W	ENST00000267101	NM_001982.3	1125	Cgg/Tgg																																																																														
TET1	0	MSKCC	GRCh37	10	70450876	70450876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	49	475	0	ENST00000373644.4:c.5716G>A	p.Glu1906Lys	p.E1906K	ENST00000373644	NM_030625.2	1906	Gaa/Aaa																																																																														
NF1	0	MSKCC	GRCh37	17	29592353	29592353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	57	469	0	ENST00000358273.4:c.4831C>T	p.Arg1611Trp	p.R1611W	ENST00000358273	NM_001042492.2	1611	Cgg/Tgg																																																																														
XIAP	0	MSKCC	GRCh37	X	123034522	123034522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	47	246	0	ENST00000355640.3:c.1279A>G	p.Ser427Gly	p.S427G	ENST00000355640		427	Agt/Ggt																																																																														
KDR	0	MSKCC	GRCh37	4	55958789	55958789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	76	547	0	ENST00000263923.4:c.3064C>T	p.Arg1022Ter	p.R1022*	ENST00000263923	NM_002253.2	1022	Cga/Tga																																																																														
TEK	0	MSKCC	GRCh37	9	27192600	27192600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	61	452	0	ENST00000380036.4:c.1603C>T	p.Arg535Cys	p.R535C	ENST00000380036	NM_000459.3	535	Cgc/Tgc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993832	72993832	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	32	473	1	ENST00000268489.5:c.213del	p.Ser72ProfsTer37	p.S72Pfs*37	ENST00000268489	NM_006885.3	71	ccC/cc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10031919	10031919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	60	669	1	ENST00000330684.3:c.904G>A	p.Ala302Thr	p.A302T	ENST00000330684	NM_001134407.1	302	Gct/Act																																																																														
B2M	567	MSKCC	GRCh37	15	45007752	45007753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	116	450	0	ENST00000558401.1:c.204dup	p.Val69SerfsTer21	p.V69Sfs*21	ENST00000558401	NM_004048.2	67	gaa/gAaa																																																																														
ESR1	0	MSKCC	GRCh37	6	152419949	152419949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	59	591	0	ENST00000206249.3:c.1636G>A	p.Ala546Thr	p.A546T	ENST00000206249	NM_000125.3	546	Gcc/Acc																																																																														
MGA	0	MSKCC	GRCh37	15	42046674	42046674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	75	552	1	ENST00000219905.7:c.7048G>A	p.Val2350Met	p.V2350M	ENST00000219905	NM_001164273.1	2350	Gtg/Atg																																																																														
RAC1	0	MSKCC	GRCh37	7	6431649	6431649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	74	515	5	ENST00000356142.4:c.202C>T	p.Arg68Cys	p.R68C	ENST00000356142	NM_018890.3	68	Cgc/Tgc																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073398	8073398	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201286989		P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	63	586	0	ENST00000377482.5:c.1261G>A	p.Ala421Thr	p.A421T	ENST00000377482	NM_018948.3	421	Gcc/Acc																																																																														
MTOR	0	MSKCC	GRCh37	1	11186766	11186766	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	53	617	0	ENST00000361445.4:c.6439A>G	p.Asn2147Asp	p.N2147D	ENST00000361445	NM_004958.3	2147	Aac/Gac																																																																														
SPEN	0	MSKCC	GRCh37	1	16254995	16254995	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	50	306	0	ENST00000375759.3:c.2260A>G	p.Arg754Gly	p.R754G	ENST00000375759	NM_015001.2	754	Agg/Ggg																																																																														
PIK3R3	0	MSKCC	GRCh37	1	46521524	46521525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	87	702	0	ENST00000262741.5:c.883dupA	p.Met295AsnfsTer3	p.M295Nfs*3	ENST00000262741	NM_003629.3	295	atg/aAtg																																																																														
RAD54L	0	MSKCC	GRCh37	1	46714238	46714238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	57	598	0	ENST00000371975.4:c.58T>C	p.Cys20Arg	p.C20R	ENST00000371975	NM_003579.3	20	Tgt/Cgt																																																																														
RAD54L	0	MSKCC	GRCh37	1	46738164	46738164	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	59	555	0	ENST00000371975.4:c.1196T>A	p.Ile399Asn	p.I399N	ENST00000371975	NM_003579.3	399	aTc/aAc																																																																														
SDHC	0	MSKCC	GRCh37	1	161326466	161326466	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1226	84	818	0	ENST00000367975.2:c.244del		p.X82_splice	ENST00000367975	NM_003001.3	82																																																																															
NUF2	0	MSKCC	GRCh37	1	163318766	163318766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	40	505	0	ENST00000271452.3:c.1156G>A	p.Ala386Thr	p.A386T	ENST00000271452	NM_145697.2	386	Gct/Act																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920442	114920442	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	48	521	0	ENST00000543371.1:c.1383A>C	p.Lys461Asn	p.K461N	ENST00000543371	NM_001198531.1	461	aaA/aaC																																																																														
INPPL1	0	MSKCC	GRCh37	11	71948388	71948388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1257	126	893	1	ENST00000298229.2:c.3100G>A	p.Val1034Met	p.V1034M	ENST00000298229	NM_001567.3	1034	Gtg/Atg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118352712	118352712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	65	557	0	ENST00000534358.1:c.3917C>T	p.Pro1306Leu	p.P1306L	ENST00000534358	NM_005933.3	1306	cCg/cTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118380738	118380738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	49	472	1	ENST00000534358.1:c.10976G>A	p.Arg3659Gln	p.R3659Q	ENST00000534358	NM_005933.3	3659	cGg/cAg																																																																														
CHEK1	0	MSKCC	GRCh37	11	125497570	125497570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	50	303	0	ENST00000428830.2:c.134C>T	p.Ala45Val	p.A45V	ENST00000428830	NM_001114121.2	45	gCc/gTc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436538	49436538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	65	630	0	ENST00000301067.7:c.5768G>T	p.Arg1923Met	p.R1923M	ENST00000301067	NM_003482.3	1923	aGg/aTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445415	49445415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1466	121	980	1	ENST00000301067.7:c.2051C>A	p.Pro684His	p.P684H	ENST00000301067	NM_003482.3	684	cCt/cAt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56493456	56493456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	47	511	0	ENST00000267101.3:c.2864G>A	p.Arg955His	p.R955H	ENST00000267101	NM_001982.3	955	cGc/cAc																																																																														
CDK8	0	MSKCC	GRCh37	13	26956958	26956958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	39	331	0	ENST00000381527.3:c.464C>T	p.Ala155Val	p.A155V	ENST00000381527	NM_001260.1	155	gCt/gTt																																																																														
FOXO1	0	MSKCC	GRCh37	13	41133887	41133887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	40	285	2	ENST00000379561.5:c.1741G>A	p.Val581Met	p.V581M	ENST00000379561	NM_002015.3	581	Gtg/Atg																																																																														
IRS2	0	MSKCC	GRCh37	13	110436207	110436207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	64	570	2	ENST00000375856.3:c.2194C>T	p.Pro732Ser	p.P732S	ENST00000375856	NM_003749.2	732	Ccc/Tcc																																																																														
MAX	0	MSKCC	GRCh37	14	65543291	65543291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	81	460	1	ENST00000358664.4:c.386G>A	p.Ser129Asn	p.S129N	ENST00000358664	NM_002382.4	129	aGc/aAc																																																																														
SMAD3	0	MSKCC	GRCh37	15	67479817	67479817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	133	574	0	ENST00000327367.4:c.1124G>A	p.Ser375Asn	p.S375N	ENST00000327367	NM_005902.3	375	aGc/aAc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88679730	88679730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	59	551	0	ENST00000360948.2:c.733G>T	p.Val245Phe	p.V245F	ENST00000360948	NM_001012338.2	245	Gtc/Ttc																																																																														
TSC2	0	MSKCC	GRCh37	16	2131727	2131727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	85	782	1	ENST00000219476.3:c.3742G>A	p.Ala1248Thr	p.A1248T	ENST00000219476	NM_000548.3	1248	Gcc/Acc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778990	3778990	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	53	503	1	ENST00000262367.5:c.6058C>T	p.Gln2020Ter	p.Q2020*	ENST00000262367	NM_004380.2	2020	Cag/Tag																																																																														
MAPK3	0	MSKCC	GRCh37	16	30129463	30129463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			990	76	636	0	ENST00000263025.4:c.565C>T	p.Arg189Trp	p.R189W	ENST00000263025	NM_002746.2	189	Cgg/Tgg																																																																														
CBFB	0	MSKCC	GRCh37	16	67070660	67070660	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	19	148	0	ENST00000412916.2:c.282+2T>C		p.X94_splice	ENST00000412916		94																																																																															
CTCF	0	MSKCC	GRCh37	16	67644729	67644729	+	splice_region_variant,5_prime_UTR_variant	Splice_Region	SNP	A	A	G			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	52	436	0	ENST00000264010.4:c.-7A>G		p.X3_splice	ENST00000264010	NM_006565.3	3																																																																															
CDH1	0	MSKCC	GRCh37	16	68867355	68867355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	54	460	0	ENST00000261769.5:c.2602C>T	p.Arg868Cys	p.R868C	ENST00000261769	NM_004360.3	868	Cgc/Tgc																																																																														
AURKB	0	MSKCC	GRCh37	17	8111056	8111056	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	81	719	1	ENST00000585124.1:c.151G>T	p.Ala51Ser	p.A51S	ENST00000585124	NM_004217.3	51	Gct/Tct																																																																														
FLCN	0	MSKCC	GRCh37	17	17127438	17127438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	71	589	0	ENST00000285071.4:c.416G>A	p.Gly139Asp	p.G139D	ENST00000285071	NM_144997.5	139	gGc/gAc																																																																														
STAT5A	0	MSKCC	GRCh37	17	40441905	40441905	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	76	763	0	ENST00000345506.4:c.150T>A	p.Asn50Lys	p.N50K	ENST00000345506	NM_003152.3	50	aaT/aaA																																																																														
STAT5A	0	MSKCC	GRCh37	17	40459688	40459688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	75	645	0	ENST00000345506.4:c.1853G>A	p.Arg618His	p.R618H	ENST00000345506	NM_003152.3	618	cGc/cAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5212379	5212379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	93	808	3	ENST00000357368.4:c.4738C>T	p.Pro1580Ser	p.P1580S	ENST00000357368	NM_002850.3	1580	Cca/Tca																																																																														
PTPRS	0	MSKCC	GRCh37	19	5222747	5222747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	81	738	3	ENST00000357368.4:c.3056G>A	p.Gly1019Asp	p.G1019D	ENST00000357368	NM_002850.3	1019	gGc/gAc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5258034	5258034	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	52	431	0	ENST00000357368.4:c.700G>T	p.Val234Leu	p.V234L	ENST00000357368	NM_002850.3	234	Gtg/Ttg																																																																														
UPF1	0	MSKCC	GRCh37	19	18976962	18976962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	43	446	0	ENST00000262803.5:c.3347C>T	p.Ser1116Phe	p.S1116F	ENST00000262803	NM_002911.3	1116	tCc/tTc																																																																														
POLD1	0	MSKCC	GRCh37	19	50905891	50905891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	101	771	1	ENST00000440232.2:c.863C>T	p.Ala288Val	p.A288V	ENST00000440232	NM_002691.3	288	gCg/gTg																																																																														
SOS1	0	MSKCC	GRCh37	2	39241009	39241009	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	43	487	0	ENST00000402219.2:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000402219	NM_005633.3	688	Cga/Tga																																																																														
SOS1	0	MSKCC	GRCh37	2	39250344	39250344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	60	761	0	ENST00000402219.2:c.1225A>G	p.Ser409Gly	p.S409G	ENST00000402219	NM_005633.3	409	Agt/Ggt																																																																														
INPP4A	0	MSKCC	GRCh37	2	99182598	99182598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	40	420	0	ENST00000074304.5:c.2401G>A	p.Val801Met	p.V801M	ENST00000074304	NM_001134224.1	801	Gtg/Atg																																																																														
ERCC3	0	MSKCC	GRCh37	2	128038162	128038162	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			772	57	596	0	ENST00000285398.2:c.1388A>T	p.Lys463Met	p.K463M	ENST00000285398	NM_000122.1	463	aAg/aTg																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266794	198266794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	75	503	0	ENST00000335508.6:c.2138C>A	p.Ala713Asp	p.A713D	ENST00000335508	NM_012433.2	713	gCt/gAt																																																																														
BAP1	0	MSKCC	GRCh37	3	52441997	52441997	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	80	458	0	ENST00000460680.1:c.352T>G	p.Phe118Val	p.F118V	ENST00000460680	NM_004656.3	118	Ttc/Gtc																																																																														
GATA2	0	MSKCC	GRCh37	3	128205805	128205805	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	56	669	0	ENST00000341105.2:c.70T>G	p.Ser24Ala	p.S24A	ENST00000341105	NM_032638.4	24	Tca/Gca																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808883	1808883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	91	749	0	ENST00000260795.2:c.2315C>T	p.Pro772Leu	p.P772L	ENST00000260795		772	cCg/cTg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66197713	66197713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	49	515	0	ENST00000273854.3:c.2986G>A	p.Ala996Thr	p.A996T	ENST00000273854	NM_004439.5	996	Gct/Act																																																																														
FBXW7	0	MSKCC	GRCh37	4	153251980	153251980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	48	623	0	ENST00000281708.4:c.1026A>G	p.Ile342Met	p.I342M	ENST00000281708	NM_033632.3	342	atA/atG																																																																														
HIST1H2BD	0	MSKCC	GRCh37	6	26158525	26158525	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	67	549	0	ENST00000289316.2:c.128A>G	p.Tyr43Cys	p.Y43C	ENST00000289316	NM_138720.2	43	tAc/tGc																																																																														
STK19	0	MSKCC	GRCh37	6	31939960	31939960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	65	547	0	ENST00000375331.2:c.187C>T	p.Arg63Trp	p.R63W	ENST00000375331	NM_004197.1	63	Cgg/Tgg																																																																														
DAXX	0	MSKCC	GRCh37	6	33288885	33288885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	48	392	0	ENST00000374542.5:c.667C>A	p.Leu223Met	p.L223M	ENST00000374542	NM_001141970.1	223	Ctg/Atg																																																																														
FYN	0	MSKCC	GRCh37	6	111983091	111983091	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	53	610	1	ENST00000368678.4:c.1456C>T	p.Gln486Ter	p.Q486*	ENST00000368678		486	Cag/Tag																																																																														
CARD11	0	MSKCC	GRCh37	7	2956939	2956939	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	47	529	0	ENST00000396946.4:c.2688del	p.Phe896LeufsTer18	p.F896Lfs*18	ENST00000396946	NM_032415.4	896	ttT/tt																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468113	50468113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	66	395	0	ENST00000331340.3:c.1348C>T	p.Arg450Cys	p.R450C	ENST00000331340	NM_006060.4	450	Cgc/Tgc																																																																														
EGFR	0	MSKCC	GRCh37	7	55229195	55229195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	31	260	0	ENST00000275493.2:c.1502C>T	p.Ala501Val	p.A501V	ENST00000275493	NM_005228.3	501	gCc/gTc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151879276	151879276	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146455116		P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	63	420	0	ENST00000262189.6:c.5669G>A	p.Arg1890Gln	p.R1890Q	ENST00000262189	NM_170606.2	1890	cGa/cAa																																																																														
AR	0	MSKCC	GRCh37	X	66765308	66765308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	83	363	0	ENST00000374690.3:c.320A>G	p.Tyr107Cys	p.Y107C	ENST00000374690	NM_000044.3	107	tAc/tGc																																																																														
MED12	0	MSKCC	GRCh37	X	70361197	70361197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	80	359	0	ENST00000374080.3:c.6385C>T	p.Pro2129Ser	p.P2129S	ENST00000374080		2129	Ccc/Tcc																																																																														
TSC2	0	MSKCC	GRCh37	16	2138094	2138099	+	inframe_deletion	In_Frame_Del	DEL	ACCGCA	ACCGCA	-			P-0022126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	162	875	0	ENST00000219476.3:c.5117_5122del	p.Arg1706_Asn1707del	p.R1706_N1707del	ENST00000219476	NM_000548.3	1705	gACCGCAac/gac																																																																														
TP53	0	MSKCC	GRCh37	17	7579546	7579547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0022126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	235	728	0	ENST00000269305.4:c.140dupC	p.Asp48GlyfsTer4	p.D48Gfs*4	ENST00000269305	NM_001126112.2	47	ccg/ccCg																																																																														
BCOR	0	MSKCC	GRCh37	X	39922130	39922130	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0022126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	21	855	0	ENST00000378444.4:c.4042C>T	p.Gln1348Ter	p.Q1348*	ENST00000378444	NM_001123385.1	1348	Cag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			319	453	945	1	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139395260	139395260	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			377	562	767	0	ENST00000277541.6:c.5678del	p.Gly1893AlafsTer88	p.G1893Afs*88	ENST00000277541	NM_017617.3	1893	gGc/gc																																																																														
TBX3	0	MSKCC	GRCh37	12	115109813	115109813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	432	759	0	ENST00000257566.3:c.2065G>T	p.Gly689Cys	p.G689C	ENST00000257566	NM_016569.3	689	Ggc/Tgc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36931998	36931998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			290	386	707	1	ENST00000361632.4:c.2471G>T	p.Gly824Val	p.G824V	ENST00000361632		824	gGg/gTg																																																																														
DDR2	0	MSKCC	GRCh37	1	162741817	162741817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			473	173	382	1	ENST00000367921.3:c.1508G>T	p.Cys503Phe	p.C503F	ENST00000367921	NM_006182.2	503	tGc/tTc																																																																														
BIRC3	0	MSKCC	GRCh37	11	102206719	102206719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			428	195	566	0	ENST00000263464.3:c.1347G>T	p.Lys449Asn	p.K449N	ENST00000263464	NM_001165.4	449	aaG/aaT																																																																														
CHEK1	0	MSKCC	GRCh37	11	125514113	125514113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			552	258	709	0	ENST00000428830.2:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000428830	NM_001114121.2	351	Gat/Tat																																																																														
TBX3	0	MSKCC	GRCh37	12	115120811	115120811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	491	527	1	ENST00000257566.3:c.195G>T	p.Met65Ile	p.M65I	ENST00000257566	NM_016569.3	65	atG/atT																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43762071	43762071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			499	147	640	0	ENST00000382044.4:c.1374G>T	p.Gln458His	p.Q458H	ENST00000382044	NM_001141980.1	458	caG/caT																																																																														
TP53	7157	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	DEL	C	C	-	rs1131691033		P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			241	540	636	0	ENST00000269305.4:c.993+1del		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
ERBB2	0	MSKCC	GRCh37	17	37876071	37876071	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	416	735	1	ENST00000269571.5:c.1930G>T	p.Ala644Ser	p.A644S	ENST00000269571		644	Gcc/Tcc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37882896	37882896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	397	781	1	ENST00000269571.5:c.2954G>A	p.Arg985His	p.R985H	ENST00000269571		985	cGc/cAc																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14629017	14629017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	382	745	0	ENST00000254322.2:c.145G>C	p.Ala49Pro	p.A49P	ENST00000254322	NM_006145.1	49	Gct/Cct																																																																														
MST1R	0	MSKCC	GRCh37	3	49934713	49934713	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			648	190	699	0	ENST00000296474.3:c.2183G>T	p.Arg728Leu	p.R728L	ENST00000296474	NM_002447.2	728	cGg/cTg																																																																														
ATR	0	MSKCC	GRCh37	3	142215258	142215258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			244	387	657	0	ENST00000350721.4:c.5843G>T	p.Gly1948Val	p.G1948V	ENST00000350721	NM_001184.3	1948	gGg/gTg																																																																														
TET2	0	MSKCC	GRCh37	4	106155914	106155914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	219	415	0	ENST00000380013.4:c.815G>T	p.Gly272Val	p.G272V	ENST00000380013	NM_001127208.2	272	gGg/gTg																																																																														
MDC1	0	MSKCC	GRCh37	6	30676116	30676116	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			146	220	466	0	ENST00000376406.3:c.2240G>A	p.Trp747Ter	p.W747*	ENST00000376406	NM_014641.2	747	tGg/tAg																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137525548	137525548	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			229	268	742	1	ENST00000367739.4:c.467A>T	p.Glu156Val	p.E156V	ENST00000367739	NM_000416.2	156	gAg/gTg																																																																														
PARK2	0	MSKCC	GRCh37	6	162864489	162864490	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			170	210	510	0	ENST00000366898.1:c.23dup	p.Asn8LysfsTer13	p.N8Kfs*13	ENST00000366898	NM_004562.2	8	aac/aaAc																																																																														
PREX2	0	MSKCC	GRCh37	8	68968190	68968190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			908	256	726	0	ENST00000288368.4:c.1219C>T	p.Pro407Ser	p.P407S	ENST00000288368	NM_024870.2	407	Cct/Tct																																																																														
PREX2	0	MSKCC	GRCh37	8	69028112	69028112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	633	887	1	ENST00000288368.4:c.3271G>A	p.Gly1091Arg	p.G1091R	ENST00000288368	NM_024870.2	1091	Gga/Aga																																																																														
JAK2	0	MSKCC	GRCh37	9	5090449	5090449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			96	85	333	1	ENST00000381652.3:c.2765G>T	p.Arg922Leu	p.R922L	ENST00000381652	NM_004972.3	922	cGg/cTg																																																																														
JAK2	0	MSKCC	GRCh37	9	5126366	5126366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			131	151	484	0	ENST00000381652.3:c.3211G>C	p.Gly1071Arg	p.G1071R	ENST00000381652	NM_004972.3	1071	Gga/Cga																																																																														
CRLF2	0	MSKCC	GRCh37	X	1331521	1331521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			580	694	710	2	ENST00000381566.1:c.7C>T	p.Arg3Trp	p.R3W	ENST00000381566		3	Cgg/Tgg																																																																														
BCOR	0	MSKCC	GRCh37	X	39933293	39933293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			876	857	998	1	ENST00000378444.4:c.1306G>T	p.Val436Phe	p.V436F	ENST00000378444	NM_001123385.1	436	Gtc/Ttc																																																																														
RBM10	0	MSKCC	GRCh37	X	47045923	47045923	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			679	765	752	0	ENST00000329236.7:c.2484C>A	p.Tyr828Ter	p.Y828*	ENST00000329236	NM_001204466.1	828	taC/taA																																																																														
MED12	0	MSKCC	GRCh37	X	70349594	70349594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0019979-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			721	354	811	1	ENST00000374080.3:c.3756G>T	p.Glu1252Asp	p.E1252D	ENST00000374080		1252	gaG/gaT																																																																														
TP53	0	MSKCC	GRCh37	17	7579314	7579314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0022099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	25	549	0	ENST00000269305.4:c.373A>C	p.Thr125Pro	p.T125P	ENST00000269305	NM_001126112.2	125	Acg/Ccg																																																																														
IGF1R	0	MSKCC	GRCh37	15	99442712	99442712	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	42	614	0	ENST00000268035.6:c.1109T>G	p.Ile370Ser	p.I370S	ENST00000268035	NM_000875.3	370	aTt/aGt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7979011	7979011	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	47	684	0	ENST00000319144.4:c.1556A>G	p.Tyr519Cys	p.Y519C	ENST00000319144	NM_001139.2	519	tAt/tGt																																																																														
ERCC3	0	MSKCC	GRCh37	2	128036589	128036748	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GGTCTTCCCTGGTTTCTGAGACCAGGGCCACAGAACAAGATCTTTGGAGCCCAAGAAGTTCCTGAGAGAAAAACAAAAAAACAAAACAACAGCCACCTTCTGCACTCTCAATGGGGAAGAGAAACTGGCCTGGAGGAAGCTCCAAGTTTTCAATTCTTAC	GGTCTTCCCTGGTTTCTGAGACCAGGGCCACAGAACAAGATCTTTGGAGCCCAAGAAGTTCCTGAGAGAAAAACAAAAAAACAAAACAACAGCCACCTTCTGCACTCTCAATGGGGAAGAGAAACTGGCCTGGAGGAAGCTCCAAGTTTTCAATTCTTAC	-			P-0022099-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	24	56	0	ENST00000285398.2:c.1730+1_1730+160del		p.X577_splice	ENST00000285398	NM_000122.1	577																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0022325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	80	714	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0022325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	119	853	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
MST1	0	MSKCC	GRCh37	3	49723130	49723130	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0022325-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	91	826	0	ENST00000449682.2:c.1286A>C	p.Glu429Ala	p.E429A	ENST00000449682	NM_020998.3	429	gAg/gCg																																																																														
STK40	0	MSKCC	GRCh37	1	36807378	36807378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	47	735	0	ENST00000373129.3:c.1286C>T	p.Ala429Val	p.A429V	ENST00000373129	NM_032017.1	429	gCg/gTg																																																																														
RRAGC	0	MSKCC	GRCh37	1	39321494	39321494	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	102	670	0	ENST00000373001.3:c.527T>C	p.Phe176Ser	p.F176S	ENST00000373001	NM_022157.3	176	tTt/tCt																																																																														
MYCL1	0	MSKCC	GRCh37	1	40363405	40363405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	146	705	0	ENST00000397332.2:c.824A>G	p.Glu275Gly	p.E275G	ENST00000397332	NM_001033082.2	275	gAa/gGa																																																																														
MUTYH	0	MSKCC	GRCh37	1	45796909	45796909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	124	592	2	ENST00000372115.3:c.1379G>A	p.Arg460His	p.R460H	ENST00000372115	NM_001048171.1	460	cGc/cAc																																																																														
RAD54L	0	MSKCC	GRCh37	1	46743550	46743550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	60	585	0	ENST00000371975.4:c.1931G>A	p.Cys644Tyr	p.C644Y	ENST00000371975	NM_003579.3	644	tGt/tAt																																																																														
JAK1	0	MSKCC	GRCh37	1	65313336	65313336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	96	588	0	ENST00000342505.4:c.1778C>T	p.Thr593Met	p.T593M	ENST00000342505	NM_002227.2	593	aCg/aTg																																																																														
WT1	0	MSKCC	GRCh37	11	32456728	32456728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	66	523	0	ENST00000332351.3:c.164G>A	p.Gly55Asp	p.G55D	ENST00000332351	NM_024426.4	55	gGc/gAc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137706	64137706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	97	736	0	ENST00000334205.4:c.1807C>G	p.Leu603Val	p.L603V	ENST00000334205	NM_003942.2	603	Ctg/Gtg																																																																														
MEN1	0	MSKCC	GRCh37	11	64574512	64574512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	147	697	2	ENST00000337652.1:c.898C>T	p.Arg300Trp	p.R300W	ENST00000337652	NM_130803.2	300	Cgg/Tgg																																																																														
EED	0	MSKCC	GRCh37	11	85956318	85956318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	122	320	1	ENST00000263360.6:c.47C>A	p.Pro16His	p.P16H	ENST00000263360	NM_003797.3	16	cCt/cAt																																																																														
YAP1	0	MSKCC	GRCh37	11	101981731	101981731	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	120	307	1	ENST00000282441.5:c.152G>T	p.Gly51Val	p.G51V	ENST00000282441	NM_001130145.2	51	gGg/gTg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373226	118373226	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150570074		P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	112	469	1	ENST00000534358.1:c.6619C>T	p.Arg2207Trp	p.R2207W	ENST00000534358	NM_005933.3	2207	Cgg/Tgg																																																																														
KDM5A	0	MSKCC	GRCh37	12	417006	417006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	130	496	1	ENST00000399788.2:c.3544G>T	p.Asp1182Tyr	p.D1182Y	ENST00000399788	NM_001042603.1	1182	Gac/Tac																																																																														
KDM5A	0	MSKCC	GRCh37	12	464349	464349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	129	720	2	ENST00000399788.2:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000399788	NM_001042603.1	282	cGg/cAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	136	616	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ARID2	0	MSKCC	GRCh37	12	46231404	46231404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	75	557	0	ENST00000334344.6:c.1244T>C	p.Val415Ala	p.V415A	ENST00000334344	NM_152641.2	415	gTa/gCa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49422933	49422933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	145	797	1	ENST00000301067.7:c.14162G>A	p.Arg4721His	p.R4721H	ENST00000301067	NM_003482.3	4721	cGt/cAt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49445976	49445976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	196	918	1	ENST00000301067.7:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000301067	NM_003482.3	497	cCg/cTg																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50483719	50483719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	124	570	0	ENST00000394963.4:c.824C>T	p.Pro275Leu	p.P275L	ENST00000394963	NM_003076.4	275	cCg/cTg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56477655	56477655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142735651		P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	175	674	0	ENST00000267101.3:c.203C>T	p.Thr68Met	p.T68M	ENST00000267101	NM_001982.3	68	aCg/aTg																																																																														
B2M	0	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	115	416	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88679204	88679204	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	123	717	0	ENST00000360948.2:c.833A>G	p.Asn278Ser	p.N278S	ENST00000360948	NM_001012338.2	278	aAt/aGt																																																																														
NTHL1	0	MSKCC	GRCh37	16	2094723	2094723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	126	615	1	ENST00000219066.1:c.457C>T	p.Arg153Ter	p.R153*	ENST00000219066	NM_002528.5	153	Cga/Tga																																																																														
SLX4	0	MSKCC	GRCh37	16	3639203	3639203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	164	727	2	ENST00000294008.3:c.4436G>A	p.Arg1479Gln	p.R1479Q	ENST00000294008	NM_032444.2	1479	cGa/cAa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3789623	3789623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	108	606	0	ENST00000262367.5:c.4236G>A	p.Met1412Ile	p.M1412I	ENST00000262367	NM_004380.2	1412	atG/atA																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72821482	72821482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	145	758	1	ENST00000268489.5:c.10693G>A	p.Ala3565Thr	p.A3565T	ENST00000268489	NM_006885.3	3565	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	162	705	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
CDK12	0	MSKCC	GRCh37	17	37627217	37627217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	134	715	0	ENST00000447079.4:c.1132C>T	p.Arg378Cys	p.R378C	ENST00000447079	NM_015083.1	378	Cgc/Tgc																																																																														
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	188	652	2	ENST00000326873.7:c.580G>A	p.Asp194Asn	p.D194N	ENST00000326873	NM_000455.4	194	Gac/Aac																																																																														
UPF1	0	MSKCC	GRCh37	19	18971771	18971771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	108	558	1	ENST00000262803.5:c.2437C>A	p.Leu813Met	p.L813M	ENST00000262803	NM_002911.3	813	Ctg/Atg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221328	36221328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	165	852	3	ENST00000222270.7:c.5162C>T	p.Thr1721Met	p.T1721M	ENST00000222270	NM_014727.1	1721	aCg/aTg																																																																														
ERF	0	MSKCC	GRCh37	19	42753218	42753218	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144812092		P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	161	809	2	ENST00000222329.4:c.1046C>T	p.Pro349Leu	p.P349L	ENST00000222329	NM_006494.2	349	cCg/cTg																																																																														
POLD1	0	MSKCC	GRCh37	19	50910259	50910259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	111	632	0	ENST00000440232.2:c.1514G>A	p.Arg505His	p.R505H	ENST00000440232	NM_002691.3	505	cGc/cAc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25464450	25464450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	104	538	2	ENST00000264709.3:c.2063G>A	p.Arg688His	p.R688H	ENST00000264709	NM_175629.2	688	cGc/cAc																																																																														
SOS1	0	MSKCC	GRCh37	2	39214733	39214733	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	28	361	0	ENST00000402219.2:c.3392-1G>T		p.X1131_splice	ENST00000402219	NM_005633.3	1131																																																																															
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC	rs1361078163		P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	61	558	0	ENST00000234420.5:c.3260_3261dup	p.Phe1088ProfsTer3	p.F1088Pfs*3	ENST00000234420	NM_000179.2	1085	acc/aCCcc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99169362	99169362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	106	511	0	ENST00000074304.5:c.1292G>A	p.Arg431Gln	p.R431Q	ENST00000074304	NM_001134224.1	431	cGg/cAg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251659	212251659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139785964		P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	124	465	0	ENST00000342788.4:c.3400G>A	p.Val1134Met	p.V1134M	ENST00000342788	NM_005235.2	1134	Gtg/Atg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41818301	41818301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	11	52	0	ENST00000373198.4:c.73G>A	p.Ala25Thr	p.A25T	ENST00000373198	NM_133170.3	25	Gct/Act																																																																														
EP300	0	MSKCC	GRCh37	22	41573977	41573977	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201569846		P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	126	647	1	ENST00000263253.7:c.6262C>T	p.Arg2088Trp	p.R2088W	ENST00000263253	NM_001429.3	2088	Cgg/Tgg																																																																														
VHL	0	MSKCC	GRCh37	3	10188278	10188278	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	85	725	0	ENST00000256474.2:c.421A>G	p.Asn141Asp	p.N141D	ENST00000256474	NM_000551.3	141	Aat/Gat																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30715721	30715721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	36	411	0	ENST00000359013.4:c.1454G>A	p.Arg485His	p.R485H	ENST00000359013	NM_001024847.2	485	cGc/cAc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30732985	30732985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	95	434	0	ENST00000359013.4:c.1673G>A	p.Cys558Tyr	p.C558Y	ENST00000359013	NM_001024847.2	558	tGt/tAt																																																																														
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	142	600	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																																																														
SETD2	0	MSKCC	GRCh37	3	47162959	47162959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	116	492	0	ENST00000409792.3:c.3167C>T	p.Ser1056Leu	p.S1056L	ENST00000409792	NM_014159.6	1056	tCg/tTg																																																																														
RYBP	0	MSKCC	GRCh37	3	72427726	72427726	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	114	449	0	ENST00000477973.2:c.762T>C	p.Val255Ala	p.V255A	ENST00000477973	NM_012234.5	255	gTc/gCc																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665045	138665045	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	38	122	0	ENST00000330315.3:c.520G>T	p.Gly174Cys	p.G174C	ENST00000330315	NM_023067.3	174	Ggc/Tgc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916646	178916646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	35	391	0	ENST00000263967.3:c.33G>T	p.Trp11Cys	p.W11C	ENST00000263967	NM_006218.2	11	tgG/tgT																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185191158	185191158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	118	544	2	ENST00000265026.3:c.2039G>A	p.Arg680Gln	p.R680Q	ENST00000265026	NM_004721.4	680	cGg/cAg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156639	55156639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	146	622	3	ENST00000257290.5:c.3040G>A	p.Ala1014Thr	p.A1014T	ENST00000257290	NM_006206.4	1014	Gct/Act																																																																														
DROSHA	0	MSKCC	GRCh37	5	31468079	31468079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	133	666	0	ENST00000344624.3:c.2333G>A	p.Arg778His	p.R778H	ENST00000344624		778	cGc/cAc																																																																														
PIK3R1	5295	MSKCC	GRCh37	5	67593424	67593424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs764019194		P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	72	272	0	ENST00000274335.5:c.2170C>T	p.Arg724Ter	p.R724*	ENST00000274335		724	Cga/Tga																																																																														
MSH3	0	MSKCC	GRCh37	5	79950706	79950706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	24	189	1	ENST00000265081.6:c.160G>A	p.Ala54Thr	p.A54T	ENST00000265081	NM_002439.4	54	Gct/Act																																																																														
FLT4	0	MSKCC	GRCh37	5	180053156	180053156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	109	686	2	ENST00000261937.6:c.1213G>A	p.Ala405Thr	p.A405T	ENST00000261937	NM_182925.4	405	Gct/Act																																																																														
DAXX	0	MSKCC	GRCh37	6	33286790	33286790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	98	501	0	ENST00000374542.5:c.2147G>A	p.Arg716Gln	p.R716Q	ENST00000374542	NM_001141970.1	716	cGg/cAg																																																																														
INHBA	0	MSKCC	GRCh37	7	41729400	41729400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	146	640	0	ENST00000242208.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000242208	NM_002192.2	377	Cgc/Tgc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50444275	50444275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	65	382	1	ENST00000331340.3:c.205C>T	p.Arg69Cys	p.R69C	ENST00000331340	NM_006060.4	69	Cgt/Tgt																																																																														
MET	0	MSKCC	GRCh37	7	116418896	116418896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	159	534	0	ENST00000397752.3:c.3407A>G	p.His1136Arg	p.H1136R	ENST00000397752	NM_000245.2	1136	cAt/cGt																																																																														
SMO	0	MSKCC	GRCh37	7	128845485	128845485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	56	695	1	ENST00000249373.3:c.782G>A	p.Arg261His	p.R261H	ENST00000249373	NM_005631.4	261	cGc/cAc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151919086	151919086	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	54	372	0	ENST00000262189.6:c.3499G>T	p.Asp1167Tyr	p.D1167Y	ENST00000262189	NM_170606.2	1167	Gac/Tac																																																																														
FGFR1	0	MSKCC	GRCh37	8	38282214	38282214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	130	548	0	ENST00000425967.3:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000425967	NM_001174067.1	281	cGg/cAg																																																																														
PREX2	0	MSKCC	GRCh37	8	68995482	68995482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	27	578	0	ENST00000288368.4:c.1886G>A	p.Gly629Asp	p.G629D	ENST00000288368	NM_024870.2	629	gGc/gAc																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5522559	5522559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	80	540	1	ENST00000397747.3:c.13C>A	p.Leu5Met	p.L5M	ENST00000397747	NM_025239.3	5	Ctg/Atg																																																																														
MED12	0	MSKCC	GRCh37	X	70360705	70360705	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	25	122	0	ENST00000374080.3:c.6265C>T	p.Arg2089Trp	p.R2089W	ENST00000374080		2089	Cgg/Tgg																																																																														
JAK3	0	MSKCC	GRCh37	19	17955126	17955126	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	53	776	0	ENST00000458235.1:c.101G>C	p.Gly34Ala	p.G34A	ENST00000458235	NM_000215.3	34	gGc/gCc																																																																														
TP53	0	MSKCC	GRCh37	17	7578493	7578493	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0022358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	428	874	0	ENST00000269305.4:c.437G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tGg/tAg																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18573886	18573886	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0022358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1410	205	532	0	ENST00000266497.5:c.2204A>T	p.Gln735Leu	p.Q735L	ENST00000266497		735	cAa/cTa																																																																														
CARM1	0	MSKCC	GRCh37	19	11031765	11031765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022358-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	660	908	0	ENST00000327064.4:c.1577G>A	p.Ser526Asn	p.S526N	ENST00000327064	NM_199141.1	526	aGt/aAt																																																																														
NF1	0	MSKCC	GRCh37	17	29661882	29661882	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0022063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	225	686	0	ENST00000358273.4:c.5839G>T	p.Glu1947Ter	p.E1947*	ENST00000358273	NM_001042492.2	1947	Gaa/Taa																																																																														
ROS1	0	MSKCC	GRCh37	6	117677851	117677851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0022063-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	176	433	0	ENST00000368508.3:c.4082G>T	p.Trp1361Leu	p.W1361L	ENST00000368508	NM_002944.2	1361	tGg/tTg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528705	8528705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0022147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	45	567	1	ENST00000356435.5:c.427G>A	p.Ala143Thr	p.A143T	ENST00000356435		143	Gcc/Acc																																																																														
TP53	0	MSKCC	GRCh37	17	7578530	7578533	+	frameshift_variant	Frame_Shift_Del	DEL	ACAT	ACAT	-			P-0022147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	391	1123	0	ENST00000269305.4:c.397_400del	p.Met133PhefsTer36	p.M133Ffs*36	ENST00000269305	NM_001126112.2	133	ATGTtt/tt																																																																														
RAD51D	0	MSKCC	GRCh37	17	33446179	33446179	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0022147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	96	683	0	ENST00000335858.7:c.95T>G	p.Val32Gly	p.V32G	ENST00000335858	NM_133629.2	32	gTt/gGt																																																																														
RPTOR	0	MSKCC	GRCh37	17	78858903	78858903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0022147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	283	819	0	ENST00000306801.3:c.1938G>A	p.Met646Ile	p.M646I	ENST00000306801	NM_020761.2	646	atG/atA																																																																														
TERT	0	MSKCC	GRCh37	5	1293497	1293497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0022147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	195	1074	0	ENST00000310581.5:c.1504A>G	p.Lys502Glu	p.K502E	ENST00000310581	NM_198253.2	502	Aag/Gag																																																																														
STAG2	0	MSKCC	GRCh37	X	123234423	123234423	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0022147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	304	636	0	ENST00000218089.9:c.3784-1G>A		p.X1262_splice	ENST00000218089	NM_001042749.1	1262																																																																															
RB1	0	MSKCC	GRCh37	13	49047524	49047527	+	splice_donor_variant,coding_sequence_variant	Splice_Site	ONP	GGGG	GGGG	AGGT			P-0022147-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			169	109	505	0	ENST00000267163.4:c.2518_2520+1delinsAGGT		p.X840_splice	ENST00000267163	NM_000321.2	840																																																																															
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0022030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	71	387	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
CBFB	0	MSKCC	GRCh37	16	67100699	67100699	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0022030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	153	594	0	ENST00000412916.2:c.397C>T	p.Gln133Ter	p.Q133*	ENST00000412916		133	Cag/Tag																																																																														
GATA3	0	MSKCC	GRCh37	10	8115700	8115702	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGA	AGA	-			P-0022030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	28	358	0	ENST00000346208.3:c.1048-2_1048del		p.X350_splice	ENST00000346208		350																																																																															
TP53	0	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1171	69	893	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag																																																																														
CSF3R	0	MSKCC	GRCh37	1	36932136	36932136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	69	708	2	ENST00000361632.4:c.2333C>T	p.Ala778Val	p.A778V	ENST00000361632		778	gCg/gTg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420606	49420606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	77	839	0	ENST00000301067.7:c.15143G>T	p.Arg5048Leu	p.R5048L	ENST00000301067	NM_003482.3	5048	cGt/cTt																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885512	111885512	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1253	90	912	0	ENST00000341259.2:c.1289A>C	p.His430Pro	p.H430P	ENST00000341259	NM_005475.2	430	cAc/cCc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993509	72993509	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	64	852	2	ENST00000268489.5:c.536delG	p.Gly179AlafsTer22	p.G179Afs*22	ENST00000268489	NM_006885.3	179	gGc/gc																																																																														
PTPRS	0	MSKCC	GRCh37	19	5208253	5208253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	53	741	0	ENST00000357368.4:c.5637C>G	p.His1879Gln	p.H1879Q	ENST00000357368	NM_002850.3	1879	caC/caG																																																																														
POLD1	0	MSKCC	GRCh37	19	50905596	50905596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	81	898	1	ENST00000440232.2:c.724G>T	p.Ala242Ser	p.A242S	ENST00000440232	NM_002691.3	242	Gcg/Tcg																																																																														
SRC	0	MSKCC	GRCh37	20	36031203	36031203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	66	877	0	ENST00000358208.4:c.1322G>T	p.Arg441Leu	p.R441L	ENST00000358208		441	cGc/cTc																																																																														
DAXX	0	MSKCC	GRCh37	6	33287244	33287244	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			963	120	818	0	ENST00000374542.5:c.1853C>G	p.Ser618Cys	p.S618C	ENST00000374542	NM_001141970.1	618	tCt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	390	781	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0021947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	142	637	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	446	872	4	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916948	178916950	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0021947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	354	493	0	ENST00000263967.3:c.337_339delCTC	p.Leu113del	p.L113del	ENST00000263967	NM_006218.2	112	aTCCtc/atc																																																																														
MPL	0	MSKCC	GRCh37	1	43804231	43804231	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	99	533	0	ENST00000372470.3:c.231C>A	p.Cys77Ter	p.C77*	ENST00000372470	NM_005373.2	77	tgC/tgA																																																																														
MGA	0	MSKCC	GRCh37	15	42042385	42042386	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAAAGAGGC			P-0021947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	392	673	0	ENST00000219905.7:c.6584_6593dupAAGAGGCAGA	p.Asp2198GlufsTer9	p.D2198Efs*9	ENST00000219905	NM_001164273.1	2194	aag/aAGAAAGAGGCag																																																																														
GNAS	0	MSKCC	GRCh37	20	57480505	57480506	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGAGTACCAGCTGATTGACTGTGC			P-0021947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	74	434	0	ENST00000371085.3:c.502_525dupGAGTACCAGCTGATTGACTGTGCC	p.Glu168_Ala175dup	p.E168_A175dup	ENST00000371085	NM_000516.4	168	aac/aaCGAGTACCAGCTGATTGACTGTGCc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	32	663	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																																																														
IRS1	0	MSKCC	GRCh37	2	227663299	227663301	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0021922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	195	650	0	ENST00000305123.5:c.154_156delAAG	p.Lys52del	p.K52del	ENST00000305123	NM_005544.2	52	AAG/-																																																																														
TERT	0	MSKCC	GRCh37	5	1294277	1294277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	36	347	0	ENST00000310581.5:c.724G>A	p.Ala242Thr	p.A242T	ENST00000310581	NM_198253.2	242	Gct/Act																																																																														
CSDE1	0	MSKCC	GRCh37	1	115261286	115261286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	369	695	0	ENST00000438362.2:c.2435G>C	p.Ser812Thr	p.S812T	ENST00000438362	NM_001242891.1	812	aGt/aCt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	213	678	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
ATM	0	MSKCC	GRCh37	11	108115710	108115714	+	frameshift_variant	Frame_Shift_Del	DEL	AATTT	AATTT	-			P-0021935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	87	347	0	ENST00000278616.4:c.859_863delATTTA	p.Ile287TyrfsTer16	p.I287Yfs*16	ENST00000278616	NM_000051.3	286	caAATTTat/caat																																																																														
SOS1	0	MSKCC	GRCh37	2	39214687	39214688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			913	193	586	0	ENST00000402219.2:c.3436dupG	p.Glu1146GlyfsTer25	p.E1146Gfs*25	ENST00000402219	NM_005633.3	1146	gaa/gGaa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971174	21971175	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0021935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	259	452	0	ENST00000304494.5:c.183_184delGC	p.Glu61AspfsTer58	p.E61Dfs*58	ENST00000304494	NM_000077.4	61	gaGCtg/gatg																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971174	21971175	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0021935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	259	452	0	ENST00000304494.5:c.183_184delGC	p.Glu61AspfsTer58	p.E61Dfs*58	ENST00000304494	NM_000077.4	61	gaGCtg/gatg																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971174	21971175	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0021935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	259	452	0	ENST00000304494.5:c.183_184delGC	p.Glu61AspfsTer58	p.E61Dfs*58	ENST00000304494	NM_000077.4	61	gaGCtg/gatg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44945181	44945181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	232	720	1	ENST00000377967.4:c.3505G>T	p.Val1169Phe	p.V1169F	ENST00000377967	NM_021140.2	1169	Gtt/Ttt																																																																														
TBX3	0	MSKCC	GRCh37	12	115118683	115118683	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010178-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			372	318	672	0	ENST00000257566.3:c.657+1G>T		p.X219_splice	ENST00000257566	NM_016569.3	219																																																																															
APC	0	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	213	465	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	434	812	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
APC	0	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	145	486	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	558	754	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																																																															
ERCC5	0	MSKCC	GRCh37	13	103527775	103527775	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	176	548	0	ENST00000355739.4:c.3083A>C	p.Glu1028Ala	p.E1028A	ENST00000355739	NM_000123.3	1028	gAa/gCa																																																																														
IRS1	0	MSKCC	GRCh37	2	227660730	227660730	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	242	964	1	ENST00000305123.5:c.2725T>A	p.Leu909Met	p.L909M	ENST00000305123	NM_005544.2	909	Ttg/Atg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40727171	40727171	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1414	367	728	0	ENST00000373198.4:c.3793T>C	p.Phe1265Leu	p.F1265L	ENST00000373198	NM_133170.3	1265	Ttc/Ctc																																																																														
ESR1	0	MSKCC	GRCh37	6	152129409	152129409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	254	496	0	ENST00000206249.3:c.362T>C	p.Leu121Pro	p.L121P	ENST00000206249	NM_000125.3	121	cTg/cCg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	120	390	0				ENST00000310581	NM_198253.2																																																																																
H3F3A	0	MSKCC	GRCh37	1	226252162	226252162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	42	130	0	ENST00000366813.1:c.110A>G	p.Lys37Arg	p.K37R	ENST00000366813		37	aAg/aGg																																																																														
POLE	0	MSKCC	GRCh37	12	133245077	133245077	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	188	787	0	ENST00000320574.5:c.2038C>G	p.Arg680Gly	p.R680G	ENST00000320574	NM_006231.2	680	Cgc/Ggc																																																																														
TSC2	0	MSKCC	GRCh37	16	2133695	2133695	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	199	809	1	ENST00000219476.3:c.3884-1G>T		p.X1295_splice	ENST00000219476	NM_000548.3	1295																																																																															
TSC2	0	MSKCC	GRCh37	16	2136321	2136322	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	233	979	0	ENST00000219476.3:c.4792dupG	p.Asp1598GlyfsTer5	p.D1598Gfs*5	ENST00000219476	NM_000548.3	1597	ctg/ctGg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401407	139401407	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	345	831	0	ENST00000277541.6:c.3662A>G	p.Asn1221Ser	p.N1221S	ENST00000277541	NM_017617.3	1221	aAc/aGc																																																																														
IRS2	0	MSKCC	GRCh37	13	110435202	110435202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	158	726	0	ENST00000375856.3:c.3199G>A	p.Gly1067Arg	p.G1067R	ENST00000375856	NM_003749.2	1067	Ggg/Agg																																																																														
RB1	0	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	103	503	2	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610364	10610364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	221	1002	3	ENST00000171111.5:c.346C>T	p.Arg116Trp	p.R116W	ENST00000171111	NM_203500.1	116	Cgg/Tgg																																																																														
EPHB1	0	MSKCC	GRCh37	3	134670351	134670351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	96	481	0	ENST00000398015.3:c.262G>A	p.Glu88Lys	p.E88K	ENST00000398015	NM_004441.4	88	Gag/Aag																																																																														
BCL6	0	MSKCC	GRCh37	3	187447333	187447333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1369	81	722	1	ENST00000232014.4:c.860C>T	p.Ser287Leu	p.S287L	ENST00000232014	NM_001130845.1	287	tCa/tTa																																																																														
RICTOR	0	MSKCC	GRCh37	5	38949832	38949832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	38	408	0	ENST00000357387.3:c.4118C>T	p.Ser1373Phe	p.S1373F	ENST00000357387	NM_152756.3	1373	tCc/tTc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149499112	149499112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	102	729	0	ENST00000261799.4:c.2716G>C	p.Glu906Gln	p.E906Q	ENST00000261799	NM_002609.3	906	Gag/Cag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	73	760	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0021929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	25	729	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0021929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	45	581	2	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
INPPL1	0	MSKCC	GRCh37	11	71936198	71936198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021929-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	29	337	1	ENST00000298229.2:c.170C>A	p.Ala57Glu	p.A57E	ENST00000298229	NM_001567.3	57	gCg/gAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	665	823	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
RASA1	0	MSKCC	GRCh37	5	86659245	86659245	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	139	549	0	ENST00000274376.6:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000274376	NM_002890.2	512	Cga/Tga																																																																														
CASP8	0	MSKCC	GRCh37	2	202149710	202149710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	261	829	1	ENST00000358485.4:c.1151G>A	p.Gly384Asp	p.G384D	ENST00000358485	NM_001080125.1	384	gGc/gAc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913783	32913783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	165	655	0	ENST00000380152.3:c.5291C>T	p.Ser1764Leu	p.S1764L	ENST00000380152		1764	tCa/tTa																																																																														
NF1	0	MSKCC	GRCh37	17	29546065	29546065	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	281	766	0	ENST00000358273.4:c.1570G>T	p.Glu524Ter	p.E524*	ENST00000358273	NM_001042492.2	524	Gaa/Taa																																																																														
FAM46C	0	MSKCC	GRCh37	1	118165953	118165953	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	115	507	0	ENST00000369448.3:c.463A>G	p.Ile155Val	p.I155V	ENST00000369448	NM_017709.3	155	Atc/Gtc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436662	49436662	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	139	667	0	ENST00000301067.7:c.5645-1G>T		p.X1882_splice	ENST00000301067	NM_003482.3	1882																																																																															
POLE	0	MSKCC	GRCh37	12	133241043	133241043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	120	744	0	ENST00000320574.5:c.2474G>C	p.Arg825Pro	p.R825P	ENST00000320574	NM_006231.2	825	cGc/cCc																																																																														
DIS3	0	MSKCC	GRCh37	13	73355957	73355957	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	168	1013	0	ENST00000377767.4:c.14A>G	p.Lys5Arg	p.K5R	ENST00000377767	NM_014953.3	5	aAg/aGg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88483955	88483955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	293	851	0	ENST00000360948.2:c.1615G>A	p.Val539Met	p.V539M	ENST00000360948	NM_001012338.2	539	Gtg/Atg																																																																														
BLM	0	MSKCC	GRCh37	15	91337439	91337439	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	178	656	0	ENST00000355112.3:c.3062A>G	p.Asn1021Ser	p.N1021S	ENST00000355112	NM_000057.2	1021	aAt/aGt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276627	15276627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	176	1023	2	ENST00000263388.2:c.5638G>T	p.Val1880Phe	p.V1880F	ENST00000263388	NM_000435.2	1880	Gtc/Ttc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31324736	31324736	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	34	140	0	ENST00000412585.2:c.74-2A>G		p.X25_splice	ENST00000412585	NM_005514.6	25																																																																															
CDKN1A	0	MSKCC	GRCh37	6	36651991	36651992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	358	922	0	ENST00000244741.5:c.115dupG	p.Ala39GlyfsTer9	p.A39Gfs*9	ENST00000244741	NM_000389.4	38	atg/atGg																																																																														
FYN	0	MSKCC	GRCh37	6	111995762	111995762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	228	650	0	ENST00000368678.4:c.1336G>T	p.Val446Leu	p.V446L	ENST00000368678		446	Gtg/Ttg																																																																														
INHBA	0	MSKCC	GRCh37	7	41729597	41729597	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	217	715	1	ENST00000242208.4:c.932delG	p.Gly311AlafsTer48	p.G311Afs*48	ENST00000242208	NM_002192.2	311	gGc/gc																																																																														
PREX2	0	MSKCC	GRCh37	8	68968158	68968159	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0021944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	303	826	4	ENST00000288368.4:c.1187_1188delTCinsAA	p.Ile396Lys	p.I396K	ENST00000288368	NM_024870.2	396	aTC/aAA																																																																														
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	47	421	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																																																														
ERF	0	MSKCC	GRCh37	19	42753152	42753152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	48	638	0	ENST00000222329.4:c.1112C>G	p.Ser371Cys	p.S371C	ENST00000222329	NM_006494.2	371	tCt/tGt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0014275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			623	324	682	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			864	298	686	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			913	287	607	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591933	48591933	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	GT			P-0014275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	217	499	0	ENST00000342988.3:c.1096delinsGT	p.Gln366ValfsTer12	p.Q366Vfs*12	ENST00000342988	NM_005359.5	366	Caa/GTaa																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	454	508	0	ENST00000327367.4:c.1265C>T	p.Ser422Phe	p.S422F	ENST00000327367	NM_005902.3	422	tCc/tTc																																																																														
TSC1	0	MSKCC	GRCh37	9	135772062	135772062	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014275-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			764	262	508	0	ENST00000298552.3:c.3055A>G	p.Lys1019Glu	p.K1019E	ENST00000298552	NM_001162426.1	1019	Aag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	201	515	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114920430	114920430	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	266	592	0	ENST00000543371.1:c.1373del	p.Leu458TyrfsTer33	p.L458Yfs*33	ENST00000543371	NM_001198531.1	457	acT/ac																																																																														
INPP4B	0	MSKCC	GRCh37	4	143045755	143045755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	73	247	0	ENST00000262992.4:c.1879G>A	p.Val627Ile	p.V627I	ENST00000262992	NM_001101669.1	627	Gtc/Atc																																																																														
APC	0	MSKCC	GRCh37	5	112175306	112175314	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTCTAGT	GGTTCTAGT	A			P-0009972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	141	301	0	ENST00000257430.4:c.4015_4023delinsA	p.Gly1339IlefsTer12	p.G1339Ifs*12	ENST00000257430	NM_000038.5	1339	GGTTCTAGT/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	425	581	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0021876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	214	613	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0021876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	244	724	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
PTEN	0	MSKCC	GRCh37	10	89692848	89692848	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	82	168	0	ENST00000371953.3:c.332G>A	p.Trp111Ter	p.W111*	ENST00000371953	NM_000314.4	111	tGg/tAg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	380	514	0	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa																																																																														
SOX17	0	MSKCC	GRCh37	8	55371799	55371820	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCGCGCTGGGCCCCGAG	GGCGGCCGCGCTGGGCCCCGAG	-			P-0021876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	68	96	0	ENST00000297316.4:c.499_520del	p.Leu167TrpfsTer213	p.L167Wfs*213	ENST00000297316	NM_022454.3	163	caGGCGGCCGCGCTGGGCCCCGAG/ca																																																																														
ARID1A	0	MSKCC	GRCh37	1	27107152	27107152	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	498	581	0	ENST00000324856.7:c.6763G>T	p.Glu2255Ter	p.E2255*	ENST00000324856	NM_006015.4	2255	Gaa/Taa																																																																														
PTEN	0	MSKCC	GRCh37	10	89720727	89720727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	36	143	0	ENST00000371953.3:c.878G>T	p.Gly293Val	p.G293V	ENST00000371953	NM_000314.4	293	gGa/gTa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350519	89350519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	81	785	0	ENST00000301030.4:c.2431G>A	p.Asp811Asn	p.D811N	ENST00000301030	NM_001256183.1	811	Gat/Aat																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139396904	139396904	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	145	498	0	ENST00000277541.6:c.5204A>G	p.His1735Arg	p.H1735R	ENST00000277541	NM_017617.3	1735	cAc/cGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	414	1006	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38950208	38950208	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs149611613		P-0021874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	251	646	0	ENST00000357387.3:c.3742A>G	p.Met1248Val	p.M1248V	ENST00000357387	NM_152756.3	1248	Atg/Gtg																																																																														
TP53	0	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0021891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			61	77	662	0	ENST00000269305.4:c.559+2T>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
NF1	0	MSKCC	GRCh37	17	29585382	29585383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGAA			P-0021891-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	77	861	0	ENST00000358273.4:c.4198_4202dup	p.Ser1401ArgfsTer7	p.S1401Rfs*7	ENST00000358273	NM_001042492.2	1398	-/CAGAA																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0021018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			567	268	212	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CARD11	0	MSKCC	GRCh37	7	2984024	2984024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			661	243	225	3	ENST00000396946.4:c.506C>T	p.Thr169Met	p.T169M	ENST00000396946	NM_032415.4	169	aCg/aTg																																																																														
APC	0	MSKCC	GRCh37	5	112175232	112175232	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			157	69	172	0	ENST00000257430.4:c.3942del	p.Arg1314SerfsTer7	p.R1314Sfs*7	ENST00000257430	NM_000038.5	1314	aGg/ag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18762491	18762491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			307	37	286	0	ENST00000266497.5:c.3987G>T	p.Lys1329Asn	p.K1329N	ENST00000266497		1329	aaG/aaT																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40675070	40675070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021018-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			855	56	314	0	ENST00000249776.8:c.34G>T	p.Val12Phe	p.V12F	ENST00000249776	NM_033286.3	12	Gtt/Ttt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	260	920	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	674	878	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9787061	9787061	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	336	694	0	ENST00000377346.4:c.3092T>G	p.Val1031Gly	p.V1031G	ENST00000377346	NM_005026.3	1031	gTg/gGg																																																																														
RRAGC	0	MSKCC	GRCh37	1	39322622	39322622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	55	783	0	ENST00000373001.3:c.370T>C	p.Phe124Leu	p.F124L	ENST00000373001	NM_022157.3	124	Ttt/Ctt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156830876	156830876	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	102	706	0	ENST00000524377.1:c.150C>A	p.Cys50Ter	p.C50*	ENST00000524377	NM_002529.3	50	tgC/tgA																																																																														
ELF3	0	MSKCC	GRCh37	1	201982332	201982332	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	222	867	0	ENST00000359651.3:c.715del	p.Asp239IlefsTer15	p.D239Ifs*15	ENST00000359651		237	aaG/aa																																																																														
IGF2	0	MSKCC	GRCh37	11	2154387	2154387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	190	933	0	ENST00000434045.2:c.541C>G	p.Arg181Gly	p.R181G	ENST00000434045	NM_001127598.1	181	Cgc/Ggc																																																																														
KRAS	0	MSKCC	GRCh37	12	25380196	25380196	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	90	650	1	ENST00000256078.4:c.262A>G	p.Lys88Glu	p.K88E	ENST00000256078	NM_033360.2	88	Aaa/Gaa																																																																														
TSC2	0	MSKCC	GRCh37	16	2110783	2110783	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	225	869	0	ENST00000219476.3:c.1088A>G	p.Asn363Ser	p.N363S	ENST00000219476	NM_000548.3	363	aAc/aGc																																																																														
SLX4	0	MSKCC	GRCh37	16	3642720	3642720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	194	822	0	ENST00000294008.3:c.2307G>T	p.Glu769Asp	p.E769D	ENST00000294008	NM_032444.2	769	gaG/gaT																																																																														
RARA	0	MSKCC	GRCh37	17	38512261	38512261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	363	730	0	ENST00000254066.5:c.1172G>T	p.Gly391Val	p.G391V	ENST00000254066	NM_000964.3	391	gGg/gTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117895	70117895	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	137	536	0	ENST00000245479.2:c.363G>C	p.Arg121Ser	p.R121S	ENST00000245479	NM_000346.3	121	agG/agC																																																																														
YES1	0	MSKCC	GRCh37	18	743260	743260	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	627	858	0	ENST00000314574.4:c.880G>T	p.Gly294Ter	p.G294*	ENST00000314574	NM_005433.3	294	Gga/Tga																																																																														
CCNE1	0	MSKCC	GRCh37	19	30308434	30308434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	678	766	0	ENST00000262643.3:c.448G>T	p.Asp150Tyr	p.D150Y	ENST00000262643	NM_001238.2	150	Gat/Tat																																																																														
AKT2	0	MSKCC	GRCh37	19	40741015	40741015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	550	920	1	ENST00000392038.2:c.1303G>T	p.Asp435Tyr	p.D435Y	ENST00000392038	NM_001626.4	435	Gac/Tac																																																																														
ASXL2	0	MSKCC	GRCh37	2	25966456	25966456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	268	819	1	ENST00000435504.4:c.2750C>T	p.Ser917Leu	p.S917L	ENST00000435504		917	tCg/tTg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259296	89259296	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	401	574	0	ENST00000336596.2:c.440del	p.Ala147GlufsTer16	p.A147Efs*16	ENST00000336596	NM_005233.5	147	gCa/ga																																																																														
ATR	0	MSKCC	GRCh37	3	142278129	142278129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	189	740	1	ENST00000350721.4:c.1696G>A	p.Val566Met	p.V566M	ENST00000350721	NM_001184.3	566	Gtg/Atg																																																																														
RICTOR	0	MSKCC	GRCh37	5	38982091	38982091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	574	637	0	ENST00000357387.3:c.631A>G	p.Ile211Val	p.I211V	ENST00000357387	NM_152756.3	211	Atc/Gtc																																																																														
APC	0	MSKCC	GRCh37	5	112179752	112179752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	138	447	0	ENST00000257430.4:c.8461G>C	p.Asp2821His	p.D2821H	ENST00000257430	NM_000038.5	2821	Gac/Cac																																																																														
IRF4	0	MSKCC	GRCh37	6	394894	394894	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	171	618	0	ENST00000380956.4:c.290T>A	p.Leu97Gln	p.L97Q	ENST00000380956	NM_001195286.1	97	cTg/cAg																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32190522	32190522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	223	862	0	ENST00000375023.3:c.217C>T	p.Leu73Phe	p.L73F	ENST00000375023	NM_004557.3	73	Ctc/Ttc																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652007	36652007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	417	739	0	ENST00000244741.5:c.129G>T	p.Gln43His	p.Q43H	ENST00000244741	NM_000389.4	43	caG/caT																																																																														
CARD11	0	MSKCC	GRCh37	7	2984065	2984065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	332	613	0	ENST00000396946.4:c.465G>T	p.Arg155Ser	p.R155S	ENST00000396946	NM_032415.4	155	agG/agT																																																																														
ETV1	0	MSKCC	GRCh37	7	13971216	13971216	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	168	569	0	ENST00000405192.2:c.713A>G	p.His238Arg	p.H238R	ENST00000405192	NM_001163147.1	238	cAc/cGc																																																																														
EGFR	0	MSKCC	GRCh37	7	55273024	55273024	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	224	810	2	ENST00000275493.2:c.3347A>T	p.Asn1116Ile	p.N1116I	ENST00000275493	NM_005228.3	1116	aAc/aTc																																																																														
HGF	0	MSKCC	GRCh37	7	81358979	81358979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	271	736	2	ENST00000222390.5:c.982C>A	p.Arg328Ser	p.R328S	ENST00000222390	NM_000601.4	328	Cgt/Agt																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509625	106509625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	189	640	0	ENST00000359195.3:c.1619G>T	p.Gly540Val	p.G540V	ENST00000359195	NM_002649.2	540	gGg/gTg																																																																														
LYN	0	MSKCC	GRCh37	8	56863040	56863040	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	171	735	0	ENST00000519728.1:c.307A>T	p.Lys103Ter	p.K103*	ENST00000519728	NM_002350.3	103	Aag/Tag																																																																														
JAK2	0	MSKCC	GRCh37	9	5080555	5080555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	68	510	0	ENST00000381652.3:c.2306G>A	p.Arg769Lys	p.R769K	ENST00000381652	NM_004972.3	769	aGg/aAg																																																																														
NTRK2	0	MSKCC	GRCh37	9	87317318	87317318	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	177	787	0	ENST00000277120.3:c.343A>T	p.Ser115Cys	p.S115C	ENST00000277120		115	Agc/Tgc																																																																														
BCOR	0	MSKCC	GRCh37	X	39916521	39916521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	474	873	1	ENST00000378444.4:c.4482C>A	p.Asp1494Glu	p.D1494E	ENST00000378444	NM_001123385.1	1494	gaC/gaA																																																																														
BCOR	0	MSKCC	GRCh37	X	39934394	39934394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	372	726	0	ENST00000378444.4:c.205G>T	p.Ala69Ser	p.A69S	ENST00000378444	NM_001123385.1	69	Gca/Tca																																																																														
KDM6A	0	MSKCC	GRCh37	X	44929072	44929072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	102	624	0	ENST00000377967.4:c.2172A>G	p.Ile724Met	p.I724M	ENST00000377967	NM_021140.2	724	atA/atG																																																																														
GATA1	0	MSKCC	GRCh37	X	48650771	48650771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	242	829	0	ENST00000376670.3:c.640C>A	p.Leu214Met	p.L214M	ENST00000376670	NM_002049.3	214	Ctg/Atg																																																																														
AMER1	0	MSKCC	GRCh37	X	63409860	63409860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021896-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	121	531	0	ENST00000330258.3:c.3307G>T	p.Gly1103Trp	p.G1103W	ENST00000330258	NM_152424.3	1103	Ggg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0021882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	300	732	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
FLT1	0	MSKCC	GRCh37	13	29008033	29008033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	60	480	0	ENST00000282397.4:c.736C>G	p.His246Asp	p.H246D	ENST00000282397	NM_002019.4	246	Cat/Gat																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43724664	43724664	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	318	853	0	ENST00000382044.4:c.3403G>C	p.Glu1135Gln	p.E1135Q	ENST00000382044	NM_001141980.1	1135	Gaa/Caa																																																																														
FAT1	0	MSKCC	GRCh37	4	187558017	187558017	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	169	400	0	ENST00000441802.2:c.3694A>T	p.Ile1232Phe	p.I1232F	ENST00000441802	NM_005245.3	1232	Att/Ttt																																																																														
MED12	0	MSKCC	GRCh37	X	70349204	70349204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	168	678	1	ENST00000374080.3:c.3616C>A	p.His1206Asn	p.H1206N	ENST00000374080		1206	Cac/Aac																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	113	747	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	104	589	4	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	76	599	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
JAK1	0	MSKCC	GRCh37	1	65330630	65330630	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	86	667	1	ENST00000342505.4:c.1016delA	p.Asn339IlefsTer3	p.N339Ifs*3	ENST00000342505	NM_002227.2	339	aAt/at																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	160	918	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	84	728	5	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																																																														
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	33	231	2	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	143	743	2	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	71	772	0	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																																																														
FOXP1	0	MSKCC	GRCh37	3	71101751	71101751	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	68	495	0	ENST00000318789.4:c.447del	p.Lys149AsnfsTer57	p.K149Nfs*57	ENST00000318789	NM_032682.5	149	aaA/aa																																																																														
PTEN	0	MSKCC	GRCh37	10	89720650	89720650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	39	299	0	ENST00000371953.3:c.802-1G>A		p.X268_splice	ENST00000371953	NM_000314.4	268																																																																															
NOTCH4	0	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	86	703	3	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																																																														
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	78	585	0	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	146	833	4	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
PTEN	0	MSKCC	GRCh37	10	89711875	89711875	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	49	578	0	ENST00000371953.3:c.493G>T	p.Gly165Ter	p.G165*	ENST00000371953	NM_000314.4	165	Gga/Tga																																																																														
INPPL1	0	MSKCC	GRCh37	11	71944698	71944698	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	149	976	1	ENST00000298229.2:c.2123-1G>T		p.X708_splice	ENST00000298229	NM_001567.3	708																																																																															
KMT2D	0	MSKCC	GRCh37	12	49425838	49425840	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	129	732	0	ENST00000301067.7:c.12648_12650del	p.Gln4221del	p.Q4221del	ENST00000301067	NM_003482.3	4216	ccTCAg/ccg																																																																														
MAPK3	0	MSKCC	GRCh37	16	30128302	30128302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	122	938	0	ENST00000263025.4:c.930G>A	p.Met310Ile	p.M310I	ENST00000263025	NM_002746.2	310	atG/atA																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72828915	72828916	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	102	832	0	ENST00000268489.5:c.7665dup	p.Ala2556ArgfsTer23	p.A2556Rfs*23	ENST00000268489	NM_006885.3	2555	-/C																																																																														
BRD4	0	MSKCC	GRCh37	19	15376209	15376209	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	118	704	0	ENST00000263377.2:c.805C>T	p.Gln269Ter	p.Q269*	ENST00000263377	NM_058243.2	269	Cag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47103743	47103743	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	106	853	0	ENST00000409792.3:c.6203A>T	p.Gln2068Leu	p.Q2068L	ENST00000409792	NM_014159.6	2068	cAa/cTa																																																																														
ATR	0	MSKCC	GRCh37	3	142280196	142280196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	95	818	0	ENST00000350721.4:c.1238G>A	p.Cys413Tyr	p.C413Y	ENST00000350721	NM_001184.3	413	tGc/tAc																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589286	67589286	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	39	484	0	ENST00000274335.5:c.1276del	p.Tyr426IlefsTer20	p.Y426Ifs*20	ENST00000274335		425	cTt/ct																																																																														
KMT2C	0	MSKCC	GRCh37	7	152132796	152132796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	148	766	0	ENST00000262189.6:c.76G>C	p.Ala26Pro	p.A26P	ENST00000262189	NM_170606.2	26	Gcc/Ccc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	184	753	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	274	702	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0021885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	86	319	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																																																														
HGF	0	MSKCC	GRCh37	7	81381559	81381559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	71	367	0	ENST00000222390.5:c.502C>T	p.Arg168Trp	p.R168W	ENST00000222390	NM_000601.4	168	Cgg/Tgg																																																																														
ASXL2	0	MSKCC	GRCh37	2	26022275	26022275	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	198	584	0	ENST00000435504.4:c.382A>C	p.Lys128Gln	p.K128Q	ENST00000435504		128	Aag/Cag																																																																														
APC	0	MSKCC	GRCh37	5	112175153	112175153	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	133	277	0	ENST00000257430.4:c.3863del	p.Gly1288AspfsTer17	p.G1288Dfs*17	ENST00000257430	NM_000038.5	1288	Gga/ga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	48	659	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
FLT4	0	MSKCC	GRCh37	5	180039532	180039532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	169	822	1	ENST00000261937.6:c.3511G>A	p.Asp1171Asn	p.D1171N	ENST00000261937	NM_182925.4	1171	Gac/Aac																																																																														
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	232	603	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139412252	139412252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	350	629	0	ENST00000277541.6:c.1393G>A	p.Ala465Thr	p.A465T	ENST00000277541	NM_017617.3	465	Gcc/Acc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	152	692	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc																																																																														
STK11	0	MSKCC	GRCh37	19	1207201	1207201	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	432	678	0	ENST00000326873.7:c.289A>T	p.Lys97Ter	p.K97*	ENST00000326873	NM_000455.4	97	Aag/Tag																																																																														
POLD1	0	MSKCC	GRCh37	19	50905112	50905112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	145	739	0	ENST00000440232.2:c.394G>A	p.Asp132Asn	p.D132N	ENST00000440232	NM_002691.3	132	Gat/Aat																																																																														
GATA3	0	MSKCC	GRCh37	10	8111445	8111445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	146	535	1	ENST00000346208.3:c.931A>T	p.Arg311Trp	p.R311W	ENST00000346208		311	Agg/Tgg																																																																														
MGA	0	MSKCC	GRCh37	15	42041817	42041817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	50	505	2	ENST00000219905.7:c.6012G>T	p.Glu2004Asp	p.E2004D	ENST00000219905	NM_001164273.1	2004	gaG/gaT																																																																														
PDCD1	0	MSKCC	GRCh37	2	242800987	242800987	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	255	615	0	ENST00000334409.5:c.4C>T	p.Gln2Ter	p.Q2*	ENST00000334409	NM_005018.2	2	Cag/Tag																																																																														
EPHA3	0	MSKCC	GRCh37	3	89445051	89445051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	130	568	3	ENST00000336596.2:c.1371G>T	p.Trp457Cys	p.W457C	ENST00000336596	NM_005233.5	457	tgG/tgT																																																																														
CSF1R	0	MSKCC	GRCh37	5	149441291	149441291	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	215	601	0	ENST00000286301.3:c.1748A>G	p.Gln583Arg	p.Q583R	ENST00000286301	NM_005211.3	583	cAg/cGg																																																																														
FLT4	0	MSKCC	GRCh37	5	180040033	180040033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	225	735	1	ENST00000261937.6:c.3409C>T	p.Pro1137Ser	p.P1137S	ENST00000261937	NM_182925.4	1137	Ccg/Tcg																																																																														
CCND3	0	MSKCC	GRCh37	6	41908119	41908119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	370	598	0	ENST00000372991.4:c.403C>T	p.Arg135Cys	p.R135C	ENST00000372991	NM_001760.3	135	Cgc/Tgc																																																																														
MYC	0	MSKCC	GRCh37	8	128750765	128750765	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1479	150	566	0	ENST00000377970.2:c.302A>T	p.Asn101Ile	p.N101I	ENST00000377970	NM_002467.4	101	aAc/aTc																																																																														
SYK	0	MSKCC	GRCh37	9	93627380	93627380	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	124	596	0	ENST00000375746.1:c.846+1G>A		p.X282_splice	ENST00000375746	NM_001174167.1	282																																																																															
RBM10	0	MSKCC	GRCh37	X	47044549	47044549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	107	667	1	ENST00000329236.7:c.1812C>A	p.Asp604Glu	p.D604E	ENST00000329236	NM_001204466.1	604	gaC/gaA																																																																														
AR	0	MSKCC	GRCh37	X	66942818	66942818	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021871-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	248	596	1	ENST00000374690.3:c.2599G>T	p.Val867Leu	p.V867L	ENST00000374690	NM_000044.3	867	Gtg/Ttg																																																																														
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0021863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	213	486	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																																																														
TSC1	0	MSKCC	GRCh37	9	135771828	135771828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1509	84	876	0	ENST00000298552.3:c.3289C>T	p.Arg1097Cys	p.R1097C	ENST00000298552	NM_001162426.1	1097	Cgt/Tgt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0021863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	547	994	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576213	88576213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	107	720	0	ENST00000360948.2:c.1460G>A	p.Gly487Asp	p.G487D	ENST00000360948	NM_001012338.2	487	gGc/gAc																																																																														
POLE	0	MSKCC	GRCh37	12	133252024	133252024	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	418	903	1	ENST00000320574.5:c.1186G>T	p.Glu396Ter	p.E396*	ENST00000320574	NM_006231.2	396	Gag/Tag																																																																														
POLE	0	MSKCC	GRCh37	12	133202789	133202789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			953	63	773	2	ENST00000320574.5:c.6445C>T	p.Arg2149Cys	p.R2149C	ENST00000320574	NM_006231.2	2149	Cgc/Tgc																																																																														
NCOR1	0	MSKCC	GRCh37	17	16021290	16021290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	339	609	1	ENST00000268712.3:c.1967C>T	p.Thr656Met	p.T656M	ENST00000268712	NM_006311.3	656	aCg/aTg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117774	70117775	+	missense_variant	Missense_Mutation	DNP	TC	TC	GG			P-0021863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	473	827	0	ENST00000245479.2:c.242_243delinsGG	p.Leu81Arg	p.L81R	ENST00000245479	NM_000346.3	81	cTC/cGG																																																																														
RTEL1	0	MSKCC	GRCh37	20	62294213	62294213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	562	831	5	ENST00000508582.2:c.581G>A	p.Arg194His	p.R194H	ENST00000508582		194	cGc/cAc																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266054	41266078	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAAAAGCGGCTGTTAGTCACTGG	CAGAAAAGCGGCTGTTAGTCACTGG	-			P-0021863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	124	489	0	ENST00000349496.5:c.54_78del	p.Arg18SerfsTer21	p.R18Sfs*21	ENST00000349496	NM_001904.3	17	gaCAGAAAAGCGGCTGTTAGTCACTGG/ga																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266089	41266108	+	frameshift_variant	Frame_Shift_Del	DEL	CTTACCTGGACTCTGGAATC	CTTACCTGGACTCTGGAATC	-			P-0021863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	127	525	0	ENST00000349496.5:c.87_106del	p.Tyr30PhefsTer13	p.Y30Ffs*13	ENST00000349496	NM_001904.3	29	tCTTACCTGGACTCTGGAATC/t																																																																														
TP63	0	MSKCC	GRCh37	3	189607169	189607169	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	154	946	0	ENST00000264731.3:c.1548G>C	p.Met516Ile	p.M516I	ENST00000264731	NM_003722.4	516	atG/atC																																																																														
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	378	960	2	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8518183	8518183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	1208	589	0	ENST00000356435.5:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000356435		403	cCt/cTt																																																																														
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	36	627	1	ENST00000269305.4:c.374C>A	p.Thr125Lys	p.T125K	ENST00000269305	NM_001126112.2	125	aCg/aAg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600324	10600324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	308	699	0	ENST00000171111.5:c.1531G>T	p.Gly511Cys	p.G511C	ENST00000171111	NM_203500.1	511	Ggc/Tgc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66242768	66242768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	307	488	0	ENST00000273854.3:c.1804G>T	p.Gly602Cys	p.G602C	ENST00000273854	NM_004439.5	602	Ggc/Tgc																																																																														
PBRM1	0	MSKCC	GRCh37	3	52677289	52677289	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	452	922	0	ENST00000394830.3:c.970A>T	p.Arg324Ter	p.R324*	ENST00000394830	NM_018313.4	324	Aga/Tga																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467557	66467557	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	334	510	4	ENST00000273854.3:c.712C>T	p.Arg238Ter	p.R238*	ENST00000273854	NM_004439.5	238	Cga/Tga																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8073385	8073618	+	inframe_deletion	In_Frame_Del	DEL	GGCTGGATTTGGGCGCCTCCATTTGTTTCTTCTGCTTCCCTAAAAAATTTTTCATATTTGTCCAGGTATGGTGGTCGTTCAGGTAGTAGGTAATAATGTGTTGAACTAACCTTCTTCCCATTTTCAATAATGGGCAGAATGCAAGGAACCTTACTGGCAGATCCTTCGCTGTTCTGTCTTTGCAGTGCTTTGCTGCTGACATACTTGGGATCAGGGGCAAAGCTCTGTGTCGGG	GGCTGGATTTGGGCGCCTCCATTTGTTTCTTCTGCTTCCCTAAAAAATTTTTCATATTTGTCCAGGTATGGTGGTCGTTCAGGTAGTAGGTAATAATGTGTTGAACTAACCTTCTTCCCATTTTCAATAATGGGCAGAATGCAAGGAACCTTACTGGCAGATCCTTCGCTGTTCTGTCTTTGCAGTGCTTTGCTGCTGACATACTTGGGATCAGGGGCAAAGCTCTGTGTCGGG	-			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	358	760	0	ENST00000377482.5:c.1041_1274del	p.Pro348_Pro425del	p.P348_P425del	ENST00000377482	NM_018948.3	347	ccCCCGACACAGAGCTTTGCCCCTGATCCCAAGTATGTCAGCAGCAAAGCACTGCAAAGACAGAACAGCGAAGGATCTGCCAGTAAGGTTCCTTGCATTCTGCCCATTATTGAAAATGGGAAGAAGGTTAGTTCAACACATTATTACCTACTACCTGAACGACCACCATACCTGGACAAATATGAAAAATTTTTTAGGGAAGCAGAAGAAACAAATGGAGGCGCCCAAATCCAGCCa/cca																																																																														
ID3	0	MSKCC	GRCh37	1	23885917	23885917	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	167	417	0	ENST00000374561.5:c.1A>T	p.Met1?	p.M1?	ENST00000374561	NM_002167.4	1	Atg/Ttg																																																																														
RAD54L	0	MSKCC	GRCh37	1	46715696	46715696	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	448	842	1	ENST00000371975.4:c.115A>T	p.Ser39Cys	p.S39C	ENST00000371975	NM_003579.3	39	Agt/Tgt																																																																														
EED	0	MSKCC	GRCh37	11	85989033	85989033	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	115	548	0	ENST00000263360.6:c.1199A>G	p.Lys400Arg	p.K400R	ENST00000263360	NM_003797.3	400	aAa/aGa																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18641544	18641544	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	334	637	0	ENST00000266497.5:c.2543C>G	p.Ala848Gly	p.A848G	ENST00000266497		848	gCc/gGc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49440438	49440438	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	430	917	0	ENST00000301067.7:c.4372G>C	p.Asp1458His	p.D1458H	ENST00000301067	NM_003482.3	1458	Gac/Cac																																																																														
FLT3	0	MSKCC	GRCh37	13	28626755	28626755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	392	746	0	ENST00000241453.7:c.541G>T	p.Ala181Ser	p.A181S	ENST00000241453	NM_004119.2	181	Gcc/Tcc																																																																														
FLT3	0	MSKCC	GRCh37	13	28631559	28631559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	178	716	1	ENST00000241453.7:c.409C>A	p.Gln137Lys	p.Q137K	ENST00000241453	NM_004119.2	137	Caa/Aaa																																																																														
MGA	0	MSKCC	GRCh37	15	42042557	42042557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	88	583	1	ENST00000219905.7:c.6752C>T	p.Ser2251Leu	p.S2251L	ENST00000219905	NM_001164273.1	2251	tCa/tTa																																																																														
PLCG2	0	MSKCC	GRCh37	16	81944136	81944136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	230	681	1	ENST00000359376.3:c.1745G>T	p.Arg582Leu	p.R582L	ENST00000359376	NM_002661.3	582	cGg/cTg																																																																														
CDK12	0	MSKCC	GRCh37	17	37618814	37618814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	252	662	2	ENST00000447079.4:c.490G>T	p.Ala164Ser	p.A164S	ENST00000447079	NM_015083.1	164	Gcg/Tcg																																																																														
CALR	0	MSKCC	GRCh37	19	13051624	13051644	+	inframe_deletion	In_Frame_Del	DEL	GACAACCCCGAGTATTCTCCC	GACAACCCCGAGTATTCTCCC	-			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	348	811	1	ENST00000316448.5:c.885_905del	p.Asn296_Asp302del	p.N296_D302del	ENST00000316448	NM_004343.3	295	GACAACCCCGAGTATTCTCCC/-																																																																														
BRD4	0	MSKCC	GRCh37	19	15376347	15376347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1124	203	1112	1	ENST00000263377.2:c.667C>T	p.His223Tyr	p.H223Y	ENST00000263377	NM_058243.2	223	Cac/Tac																																																																														
ASXL2	0	MSKCC	GRCh37	2	25976464	25976464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	200	847	0	ENST00000435504.4:c.1081G>C	p.Glu361Gln	p.E361Q	ENST00000435504		361	Gag/Cag																																																																														
IRS1	0	MSKCC	GRCh37	2	227660775	227660775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	503	735	1	ENST00000305123.5:c.2680G>T	p.Gly894Trp	p.G894W	ENST00000305123	NM_005544.2	894	Ggg/Tgg																																																																														
ERG	0	MSKCC	GRCh37	21	39755437	39755437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	336	716	0	ENST00000288319.7:c.1328C>A	p.Ser443Tyr	p.S443Y	ENST00000288319	NM_182918.3	443	tCc/tAc																																																																														
SOX2	0	MSKCC	GRCh37	3	181430722	181430722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	814	689	1	ENST00000325404.1:c.574G>A	p.Ala192Thr	p.A192T	ENST00000325404	NM_003106.3	192	Gcg/Acg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55139775	55139775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	86	744	0	ENST00000257290.5:c.1436G>C	p.Arg479Pro	p.R479P	ENST00000257290	NM_006206.4	479	cGa/cCa																																																																														
KDR	0	MSKCC	GRCh37	4	55984783	55984783	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	376	658	0	ENST00000263923.4:c.346G>T	p.Val116Phe	p.V116F	ENST00000263923	NM_002253.2	116	Gtc/Ttc																																																																														
TET2	0	MSKCC	GRCh37	4	106156326	106156328	+	frameshift_variant	Frame_Shift_Del	DEL	TCC	TCC	CT			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	229	541	2	ENST00000380013.4:c.1227_1229delinsCT	p.Pro410PhefsTer17	p.P410Ffs*17	ENST00000380013	NM_001127208.2	409	ccTCCt/ccCTt																																																																														
INPP4B	0	MSKCC	GRCh37	4	143033782	143033782	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	331	761	0	ENST00000262992.4:c.2189C>G	p.Pro730Arg	p.P730R	ENST00000262992	NM_001101669.1	730	cCt/cGt																																																																														
RASA1	0	MSKCC	GRCh37	5	86564741	86564741	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs200949838		P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	95	765	0	ENST00000274376.6:c.473C>G	p.Ser158Cys	p.S158C	ENST00000274376	NM_002890.2	158	tCt/tGt																																																																														
MDC1	0	MSKCC	GRCh37	6	30681601	30681601	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	441	756	1	ENST00000376406.3:c.496G>C	p.Glu166Gln	p.E166Q	ENST00000376406	NM_014641.2	166	Gag/Cag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151873676	151873676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021873-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	390	688	0	ENST00000262189.6:c.8862G>T	p.Leu2954Phe	p.L2954F	ENST00000262189	NM_170606.2	2954	ttG/ttT																																																																														
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	870	732	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																																																														
EGFR	0	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0021862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2002	4076	508	1	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																																																														
CSF3R	0	MSKCC	GRCh37	1	36937103	36937103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	398	559	2	ENST00000361632.4:c.1216G>A	p.Val406Met	p.V406M	ENST00000361632		406	Gtg/Atg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3831204	3831204	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0021862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	246	422	0	ENST00000262367.5:c.1676+1G>A		p.X559_splice	ENST00000262367	NM_004380.2	559																																																																															
INSR	0	MSKCC	GRCh37	19	7141701	7141701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021862-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	357	636	0	ENST00000302850.5:c.2669G>T	p.Arg890Leu	p.R890L	ENST00000302850	NM_000208.2	890	cGa/cTa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	124	816	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
BLM	0	MSKCC	GRCh37	15	91290720	91290720	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs139282091		P-0021870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	54	492	0	ENST00000355112.3:c.98C>T	p.Ser33Leu	p.S33L	ENST00000355112	NM_000057.2	33	tCa/tTa																																																																														
TP53	0	MSKCC	GRCh37	17	7577136	7577142	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGTCC	TCCGTCC	-			P-0021870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	108	731	0	ENST00000269305.4:c.796_802del	p.Gly266ThrfsTer77	p.G266Tfs*77	ENST00000269305	NM_001126112.2	266	GGACGGAac/ac																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	196	838	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80412493	80412493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	16	538	0	ENST00000286548.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000286548	NM_002072.3	183	cGa/cAa																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133483	55133483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	783	697	4	ENST00000257290.5:c.787G>T	p.Glu263Ter	p.E263*	ENST00000257290	NM_006206.4	263	Gaa/Taa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247267	153247267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	116	604	0	ENST00000281708.4:c.1535G>A	p.Arg512Lys	p.R512K	ENST00000281708	NM_033632.3	512	aGg/aAg																																																																														
TP53	0	MSKCC	GRCh37	17	7579485	7579485	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	201	859	0	ENST00000269305.4:c.202G>T	p.Glu68Ter	p.E68*	ENST00000269305	NM_001126112.2	68	Gag/Tag																																																																														
NEGR1	0	MSKCC	GRCh37	1	72163802	72163802	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	77	641	1	ENST00000357731.5:c.556C>T	p.Gln186Ter	p.Q186*	ENST00000357731	NM_173808.2	186	Caa/Taa																																																																														
FUBP1	0	MSKCC	GRCh37	1	78433876	78433876	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	96	630	0	ENST00000370768.2:c.223G>C	p.Ala75Pro	p.A75P	ENST00000370768	NM_003902.3	75	Gct/Cct																																																																														
RFWD2	0	MSKCC	GRCh37	1	176054966	176054966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	134	864	0	ENST00000367669.3:c.1087C>G	p.His363Asp	p.H363D	ENST00000367669	NM_022457.5	363	Cat/Gat																																																																														
PARP1	0	MSKCC	GRCh37	1	226561961	226561961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	261	723	0	ENST00000366794.5:c.2036T>A	p.Val679Glu	p.V679E	ENST00000366794	NM_001618.3	679	gTg/gAg																																																																														
PAK1	0	MSKCC	GRCh37	11	77085377	77085377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	232	636	0	ENST00000356341.3:c.473C>T	p.Ala158Val	p.A158V	ENST00000356341	NM_002576.4	158	gCc/gTc																																																																														
CDKN1B	0	MSKCC	GRCh37	12	12871147	12871147	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	25	363	0	ENST00000228872.4:c.374C>A	p.Ser125Tyr	p.S125Y	ENST00000228872	NM_004064.3	125	tCt/tAt																																																																														
KRAS	0	MSKCC	GRCh37	12	25378580	25378580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	83	829	0	ENST00000256078.4:c.418C>T	p.Pro140Ser	p.P140S	ENST00000256078	NM_033360.2	140	Cct/Tct																																																																														
LATS2	0	MSKCC	GRCh37	13	21557612	21557612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	97	823	0	ENST00000382592.4:c.2233A>G	p.Met745Val	p.M745V	ENST00000382592	NM_014572.2	745	Atg/Gtg																																																																														
FLT1	0	MSKCC	GRCh37	13	28963971	28963971	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	97	568	1	ENST00000282397.4:c.1931G>T	p.Gly644Val	p.G644V	ENST00000282397	NM_002019.4	644	gGg/gTg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912143	32912143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	287	895	4	ENST00000380152.3:c.3651G>T	p.Arg1217Ser	p.R1217S	ENST00000380152		1217	agG/agT																																																																														
IRS2	0	MSKCC	GRCh37	13	110435854	110435854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	241	639	0	ENST00000375856.3:c.2547G>T	p.Gln849His	p.Q849H	ENST00000375856	NM_003749.2	849	caG/caT																																																																														
MGA	0	MSKCC	GRCh37	15	42041834	42041834	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	109	663	0	ENST00000219905.7:c.6032del	p.Asn2011ThrfsTer11	p.N2011Tfs*11	ENST00000219905	NM_001164273.1	2010	cAa/ca																																																																														
NTRK3	0	MSKCC	GRCh37	15	88678546	88678547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	67	468	0	ENST00000360948.2:c.989dup	p.Pro331ThrfsTer76	p.P331Tfs*76	ENST00000360948	NM_001012338.2	330	cca/ccCa																																																																														
CTCF	0	MSKCC	GRCh37	16	67644830	67644830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	263	568	2	ENST00000264010.4:c.95G>T	p.Gly32Val	p.G32V	ENST00000264010	NM_006565.3	32	gGc/gTc																																																																														
TP53	0	MSKCC	GRCh37	17	7579367	7579367	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	221	850	0	ENST00000269305.4:c.320A>G	p.Tyr107Cys	p.Y107C	ENST00000269305	NM_001126112.2	107	tAc/tGc																																																																														
FLCN	0	MSKCC	GRCh37	17	17118361	17118361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	221	890	0	ENST00000285071.4:c.1476C>A	p.Asn492Lys	p.N492K	ENST00000285071	NM_144997.5	492	aaC/aaA																																																																														
AKT2	0	MSKCC	GRCh37	19	40741882	40741882	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	285	741	2	ENST00000392038.2:c.1090A>T	p.Met364Leu	p.M364L	ENST00000392038	NM_001626.4	364	Atg/Ttg																																																																														
CIC	0	MSKCC	GRCh37	19	42799191	42799191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	57	805	0	ENST00000575354.2:c.4675C>T	p.Pro1559Ser	p.P1559S	ENST00000575354	NM_015125.3	1559	Ccc/Tcc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45872199	45872199	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	44	799	0	ENST00000391945.4:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000391945	NM_000400.3	79	Gag/Cag																																																																														
MYCN	0	MSKCC	GRCh37	2	16086069	16086069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	260	745	3	ENST00000281043.3:c.1245G>T	p.Glu415Asp	p.E415D	ENST00000281043	NM_005378.4	415	gaG/gaT																																																																														
ALK	0	MSKCC	GRCh37	2	29543695	29543695	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	126	872	0	ENST00000389048.3:c.1468A>C	p.Thr490Pro	p.T490P	ENST00000389048	NM_004304.4	490	Acc/Ccc																																																																														
ERBB4	0	MSKCC	GRCh37	2	212285188	212285188	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	85	609	0	ENST00000342788.4:c.3113G>T	p.Arg1038Ile	p.R1038I	ENST00000342788	NM_005235.2	1038	aGa/aTa																																																																														
PAK7	0	MSKCC	GRCh37	20	9538358	9538358	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	116	517	1	ENST00000353224.5:c.1640C>A	p.Thr547Asn	p.T547N	ENST00000353224	NM_177990.2	547	aCt/aAt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40710653	40710653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	107	608	1	ENST00000373198.4:c.4198G>T	p.Gly1400Trp	p.G1400W	ENST00000373198	NM_133170.3	1400	Ggg/Tgg																																																																														
PTPRT	0	MSKCC	GRCh37	20	40827933	40827933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	354	809	1	ENST00000373198.4:c.2495C>A	p.Ala832Asp	p.A832D	ENST00000373198	NM_133170.3	832	gCc/gAc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259009	89259009	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	47	226	0	ENST00000336596.2:c.154-1G>T		p.X52_splice	ENST00000336596	NM_005233.5	52																																																																															
KDR	0	MSKCC	GRCh37	4	55979564	55979564	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1415	122	756	0	ENST00000263923.4:c.883G>C	p.Asp295His	p.D295H	ENST00000263923	NM_002253.2	295	Gat/Cat																																																																														
INPP4B	0	MSKCC	GRCh37	4	143081512	143081512	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	99	563	0	ENST00000262992.4:c.1562G>T	p.Trp521Leu	p.W521L	ENST00000262992	NM_001101669.1	521	tGg/tTg																																																																														
INPP4B	0	MSKCC	GRCh37	4	143094950	143094950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	134	623	0	ENST00000262992.4:c.1194G>T	p.Gln398His	p.Q398H	ENST00000262992	NM_001101669.1	398	caG/caT																																																																														
FAT1	0	MSKCC	GRCh37	4	187518122	187518122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	161	769	0	ENST00000441802.2:c.12572G>T	p.Gly4191Val	p.G4191V	ENST00000441802	NM_005245.3	4191	gGg/gTg																																																																														
IL7R	0	MSKCC	GRCh37	5	35861052	35861052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	394	569	2	ENST00000303115.3:c.181G>T	p.Asp61Tyr	p.D61Y	ENST00000303115	NM_002185.3	61	Gac/Tac																																																																														
IL7R	0	MSKCC	GRCh37	5	35876296	35876296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	277	628	0	ENST00000303115.3:c.1088G>C	p.Arg363Thr	p.R363T	ENST00000303115	NM_002185.3	363	aGa/aCa																																																																														
RASA1	0	MSKCC	GRCh37	5	86659284	86659284	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	177	550	0	ENST00000274376.6:c.1573T>C	p.Cys525Arg	p.C525R	ENST00000274376	NM_002890.2	525	Tgt/Cgt																																																																														
PRDM1	0	MSKCC	GRCh37	6	106543551	106543551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	77	495	0	ENST00000369096.4:c.353G>T	p.Gly118Val	p.G118V	ENST00000369096	NM_001198.3	118	gGt/gTt																																																																														
PRDM1	0	MSKCC	GRCh37	6	106555023	106555023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	179	611	0	ENST00000369096.4:c.2140C>A	p.Pro714Thr	p.P714T	ENST00000369096	NM_001198.3	714	Ccg/Acg																																																																														
INHBA	0	MSKCC	GRCh37	7	41729780	41729780	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	135	439	0	ENST00000242208.4:c.749G>C	p.Ser250Thr	p.S250T	ENST00000242208	NM_002192.2	250	aGt/aCt																																																																														
FGFR1	0	MSKCC	GRCh37	8	38314894	38314894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	140	606	4	ENST00000425967.3:c.170C>A	p.Ser57Tyr	p.S57Y	ENST00000425967	NM_001174067.1	57	tCc/tAc																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101891341	101891341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	100	839	1	ENST00000374994.4:c.302G>T	p.Cys101Phe	p.C101F	ENST00000374994	NM_004612.2	101	tGc/tTc																																																																														
MCL1	0	MSKCC	GRCh37	1	150551931	150551931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	76	570	0	ENST00000369026.2:c.76G>C	p.Gly26Arg	p.G26R	ENST00000369026	NM_021960.4	26	Ggc/Cgc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118374664	118374664	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	452	524	0	ENST00000534358.1:c.8057A>T	p.Asn2686Ile	p.N2686I	ENST00000534358	NM_005933.3	2686	aAc/aTc																																																																														
IGF1	0	MSKCC	GRCh37	12	102811777	102811777	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	328	638	0	ENST00000307046.8:c.407A>C	p.Gln136Pro	p.Q136P	ENST00000307046	NM_001111285.1	136	cAg/cCg																																																																														
TP53	0	MSKCC	GRCh37	17	7579373	7579373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	421	783	1	ENST00000269305.4:c.314del	p.Gly105AlafsTer18	p.G105Afs*18	ENST00000269305	NM_001126112.2	105	gGc/gc																																																																														
TP53	0	MSKCC	GRCh37	17	7579380	7579380	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	435	793	0	ENST00000269305.4:c.307T>C	p.Tyr103His	p.Y103H	ENST00000269305	NM_001126112.2	103	Tac/Cac																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602818	10602818	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	268	804	0	ENST00000171111.5:c.760A>T	p.Lys254Ter	p.K254*	ENST00000171111	NM_203500.1	254	Aag/Tag																																																																														
MSH6	0	MSKCC	GRCh37	2	48027854	48027854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	133	488	0	ENST00000234420.5:c.2732G>A	p.Arg911Gln	p.R911Q	ENST00000234420	NM_000179.2	911	cGa/cAa																																																																														
GNAS	0	MSKCC	GRCh37	20	57485448	57485448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	71	453	0	ENST00000371085.3:c.1030G>A	p.Glu344Lys	p.E344K	ENST00000371085	NM_000516.4	344	Gag/Aag																																																																														
EPHA5	0	MSKCC	GRCh37	4	66361263	66361263	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	42	327	1	ENST00000273854.3:c.911-2A>T		p.X304_splice	ENST00000273854	NM_004439.5	304																																																																															
MAP3K1	0	MSKCC	GRCh37	5	56181842	56181842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	111	565	0	ENST00000399503.3:c.4066G>T	p.Gly1356Cys	p.G1356C	ENST00000399503	NM_005921.1	1356	Ggc/Tgc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32165260	32165260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1167	117	774	0	ENST00000375023.3:c.4868G>T	p.Gly1623Val	p.G1623V	ENST00000375023	NM_004557.3	1623	gGg/gTg																																																																														
ROS1	0	MSKCC	GRCh37	6	117737452	117737452	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	88	659	0	ENST00000368508.3:c.197C>G	p.Ser66Cys	p.S66C	ENST00000368508	NM_002944.2	66	tCt/tGt																																																																														
HGF	0	MSKCC	GRCh37	7	81372753	81372753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	285	525	0	ENST00000222390.5:c.781C>T	p.Arg261Cys	p.R261C	ENST00000222390	NM_000601.4	261	Cgc/Tgc																																																																														
LYN	0	MSKCC	GRCh37	8	56864658	56864658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	57	643	1	ENST00000519728.1:c.621G>A	p.Met207Ile	p.M207I	ENST00000519728	NM_002350.3	207	atG/atA																																																																														
AMER1	0	MSKCC	GRCh37	X	63410865	63410865	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	216	733	0	ENST00000330258.3:c.2302A>G	p.Ser768Gly	p.S768G	ENST00000330258	NM_152424.3	768	Agt/Ggt																																																																														
MED12	0	MSKCC	GRCh37	X	70345959	70345959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	112	759	2	ENST00000374080.3:c.2496G>T	p.Lys832Asn	p.K832N	ENST00000374080		832	aaG/aaT																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	138	856	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	269	835	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	281	663	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	281	663	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	281	663	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0021675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	339	541	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
STK11	0	MSKCC	GRCh37	19	1219381	1219381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	286	590	1	ENST00000326873.7:c.433G>T	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	145	Gag/Tag																																																																														
TBX3	0	MSKCC	GRCh37	12	115115460	115115460	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0021675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	108	448	0	ENST00000257566.3:c.866T>A	p.Ile289Lys	p.I289K	ENST00000257566	NM_016569.3	289	aTa/aAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0021703-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	24	843	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	259	853	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																																																														
TET1	0	MSKCC	GRCh37	10	70405761	70405761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	53	609	0	ENST00000373644.4:c.3275A>G	p.Tyr1092Cys	p.Y1092C	ENST00000373644	NM_030625.2	1092	tAt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	60	558	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	46	681	2	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																														
CBFB	0	MSKCC	GRCh37	16	67063333	67063333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021677-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	56	558	0	ENST00000412916.2:c.23A>G	p.Gln8Arg	p.Q8R	ENST00000412916		8	cAg/cGg																																																																														
GATA3	0	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	142	883	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																																																														
RB1	0	MSKCC	GRCh37	13	48941662	48941681	+	frameshift_variant	Frame_Shift_Del	DEL	TTATCTTAAAAATAAAGATC	TTATCTTAAAAATAAAGATC	-			P-0021706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	46	487	0	ENST00000267163.4:c.973_992del	p.Tyr325ArgfsTer9	p.Y325Rfs*9	ENST00000267163	NM_000321.2	324	atTTATCTTAAAAATAAAGATCta/atta																																																																														
MET	0	MSKCC	GRCh37	7	116340253	116340253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	110	490	0	ENST00000397752.3:c.1115A>G	p.Asp372Gly	p.D372G	ENST00000397752	NM_000245.2	372	gAc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	408	1012	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0021681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	159	943	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	89	803	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	89	803	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	89	803	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	218	947	2	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																																																														
GLI1	0	MSKCC	GRCh37	12	57858476	57858476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199685332		P-0021681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	97	862	1	ENST00000228682.2:c.214C>T	p.Arg72Trp	p.R72W	ENST00000228682	NM_005269.2	72	Cgg/Tgg																																																																														
ELF3	0	MSKCC	GRCh37	1	201981156	201981169	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGTGGAGAAGAA	CAAGTGGAGAAGAA	-			P-0021681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	82	1148	0	ENST00000359651.3:c.240_253del	p.Glu81ArgfsTer6	p.E81Rfs*6	ENST00000359651		79	CAAGTGGAGAAGAAc/c																																																																														
ERCC2	0	MSKCC	GRCh37	19	45855493	45855493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	253	1028	1	ENST00000391945.4:c.2164C>T	p.Arg722Trp	p.R722W	ENST00000391945	NM_000400.3	722	Cgg/Tgg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0021710-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	133	551	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0021698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	117	751	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
EED	0	MSKCC	GRCh37	11	85966309	85966309	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	64	569	1	ENST00000263360.6:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000263360	NM_003797.3	136	Caa/Taa																																																																														
ATM	0	MSKCC	GRCh37	11	108121566	108121566	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	329	727	0	ENST00000278616.4:c.1374C>G	p.Cys458Trp	p.C458W	ENST00000278616	NM_000051.3	458	tgC/tgG																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060903	38060912	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGCTTATG	GGAGCTTATG	-			P-0021698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	96	662	0	ENST00000250448.2:c.1077_1086del	p.Ile360GlyfsTer26	p.I360Gfs*26	ENST00000250448	NM_004496.3	359	ccCATAAGCTCC/cc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060913	38060913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	114	642	0	ENST00000250448.2:c.1076C>T	p.Pro359Leu	p.P359L	ENST00000250448	NM_004496.3	359	cCc/cTc																																																																														
ERCC2	0	MSKCC	GRCh37	19	45868320	45868320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	161	1170	0	ENST00000391945.4:c.457C>T	p.Pro153Ser	p.P153S	ENST00000391945	NM_000400.3	153	Ccc/Tcc																																																																														
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	164	746	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																																																														
CDH1	0	MSKCC	GRCh37	16	68835736	68835737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	174	731	0	ENST00000261769.5:c.331dup	p.Ser111PhefsTer57	p.S111Ffs*57	ENST00000261769	NM_004360.3	109	-/T																																																																														
EPHA5	0	MSKCC	GRCh37	4	66213849	66213849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	89	722	1	ENST00000273854.3:c.2581G>A	p.Val861Ile	p.V861I	ENST00000273854	NM_004439.5	861	Gtc/Atc																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178120	56178120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	87	446	0	ENST00000399503.3:c.3095del	p.Asn1032ThrfsTer50	p.N1032Tfs*50	ENST00000399503	NM_005921.1	1031	agA/ag																																																																														
PREX2	0	MSKCC	GRCh37	8	69069667	69069667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	85	590	0	ENST00000288368.4:c.4342C>G	p.Leu1448Val	p.L1448V	ENST00000288368	NM_024870.2	1448	Ctc/Gtc																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	33	764	4	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	17	481	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0021685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	134	525	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7574026	7574026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	340	674	0	ENST00000269305.4:c.1001G>T	p.Gly334Val	p.G334V	ENST00000269305	NM_001126112.2	334	gGg/gTg																																																																														
MYOD1	0	MSKCC	GRCh37	11	17743005	17743005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	96	620	0	ENST00000250003.3:c.913C>T	p.Pro305Ser	p.P305S	ENST00000250003	NM_002478.4	305	Ccg/Tcg																																																																														
RB1	0	MSKCC	GRCh37	13	48916753	48916753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	255	543	0	ENST00000267163.4:c.287delA	p.Lys96ArgfsTer15	p.K96Rfs*15	ENST00000267163	NM_000321.2	95	Aaa/aa																																																																														
RASA1	0	MSKCC	GRCh37	5	86564666	86564667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0021685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	284	674	0	ENST00000274376.6:c.401_402dup	p.Pro135PhefsTer40	p.P135Ffs*40	ENST00000274376	NM_002890.2	133	ggt/ggTTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	64	646	4				ENST00000310581	NM_198253.2																																																																																
EPHB1	0	MSKCC	GRCh37	3	134851754	134851754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	53	815	2	ENST00000398015.3:c.1160C>T	p.Thr387Met	p.T387M	ENST00000398015	NM_004441.4	387	aCg/aTg																																																																														
CIC	0	MSKCC	GRCh37	19	42798098	42798098	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	181	711	0	ENST00000575354.2:c.4052C>G	p.Ser1351Ter	p.S1351*	ENST00000575354	NM_015125.3	1351	tCa/tGa																																																																														
MTOR	0	MSKCC	GRCh37	1	11292568	11292568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	144	553	0	ENST00000361445.4:c.2439G>A	p.Met813Ile	p.M813I	ENST00000361445	NM_004958.3	813	atG/atA																																																																														
MYCL1	0	MSKCC	GRCh37	1	40366776	40366776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	70	723	1	ENST00000397332.2:c.421G>A	p.Asp141Asn	p.D141N	ENST00000397332	NM_001033082.2	141	Gac/Aac																																																																														
RAD54L	0	MSKCC	GRCh37	1	46733239	46733239	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	222	870	0	ENST00000371975.4:c.1000G>C	p.Glu334Gln	p.E334Q	ENST00000371975	NM_003579.3	334	Gag/Cag																																																																														
FGFR2	0	MSKCC	GRCh37	10	123263335	123263335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	59	632	0	ENST00000358487.5:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000358487	NM_000141.4	470	Gag/Aag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436344	49436344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	149	828	2	ENST00000301067.7:c.5867G>A	p.Arg1956Lys	p.R1956K	ENST00000301067	NM_003482.3	1956	aGg/aAg																																																																														
ERBB3	0	MSKCC	GRCh37	12	56489566	56489566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	183	694	0	ENST00000267101.3:c.2031G>C	p.Met677Ile	p.M677I	ENST00000267101	NM_001982.3	677	atG/atC																																																																														
TBX3	0	MSKCC	GRCh37	12	115109735	115109735	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	215	1020	0	ENST00000257566.3:c.2143G>C	p.Glu715Gln	p.E715Q	ENST00000257566	NM_016569.3	715	Gag/Cag																																																																														
HNF1A	0	MSKCC	GRCh37	12	121434137	121434137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	186	924	0	ENST00000257555.6:c.1028C>A	p.Thr343Lys	p.T343K	ENST00000257555		343	aCa/aAa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32906503	32906513	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAACAGTTG	TGAAACAGTTG	-			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	105	658	0	ENST00000380152.3:c.889_899delGAAACAGTTGT	p.Glu297ArgfsTer4	p.E297Rfs*4	ENST00000380152		296	taTGAAACAGTTGta/tata																																																																														
ERCC5	0	MSKCC	GRCh37	13	103525622	103525622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	65	580	1	ENST00000355739.4:c.2893T>C	p.Tyr965His	p.Y965H	ENST00000355739	NM_000123.3	965	Tat/Cat																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36987039	36987039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	69	710	1	ENST00000354822.5:c.650C>T	p.Ser217Leu	p.S217L	ENST00000354822	NM_001079668.2	217	tCg/tTg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88670412	88670412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	30	655	0	ENST00000360948.2:c.1274C>A	p.Pro425Gln	p.P425Q	ENST00000360948	NM_001012338.2	425	cCa/cAa																																																																														
SLX4	0	MSKCC	GRCh37	16	3645643	3645643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	202	930	0	ENST00000294008.3:c.1976C>G	p.Ser659Trp	p.S659W	ENST00000294008	NM_032444.2	659	tCg/tGg																																																																														
NF1	0	MSKCC	GRCh37	17	29586049	29586049	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	30	566	0	ENST00000358273.4:c.4333-1G>C		p.X1445_splice	ENST00000358273	NM_001042492.2	1445																																																																															
DNMT1	0	MSKCC	GRCh37	19	10248658	10248658	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	104	716	0	ENST00000340748.4:c.4095C>G	p.Ile1365Met	p.I1365M	ENST00000340748		1365	atC/atG																																																																														
SOS1	0	MSKCC	GRCh37	2	39262364	39262364	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	294	802	0	ENST00000402219.2:c.1063G>C	p.Glu355Gln	p.E355Q	ENST00000402219	NM_005633.3	355	Gaa/Caa																																																																														
SOS1	0	MSKCC	GRCh37	2	39262430	39262430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	277	753	0	ENST00000402219.2:c.997G>C	p.Glu333Gln	p.E333Q	ENST00000402219	NM_005633.3	333	Gaa/Caa																																																																														
CUL3	0	MSKCC	GRCh37	2	225376224	225376224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	270	803	1	ENST00000264414.4:c.730G>A	p.Glu244Lys	p.E244K	ENST00000264414	NM_003590.4	244	Gaa/Aaa																																																																														
ASXL1	0	MSKCC	GRCh37	20	31021335	31021336	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	115	719	0	ENST00000375687.4:c.1336_1337dupGT	p.Pro447PhefsTer16	p.P447Ffs*16	ENST00000375687	NM_015338.5	445	gat/gaTGt																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091777	29091777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	62	707	1	ENST00000328354.6:c.1180G>A	p.Glu394Lys	p.E394K	ENST00000328354	NM_007194.3	394	Gaa/Aaa																																																																														
CHEK2	0	MSKCC	GRCh37	22	29107905	29107905	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	156	752	0	ENST00000328354.6:c.784A>T	p.Arg262Ter	p.R262*	ENST00000328354	NM_007194.3	262	Aga/Tga																																																																														
PBRM1	0	MSKCC	GRCh37	3	52584639	52584639	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	60	760	0	ENST00000394830.3:c.4374delG	p.Pro1459LeufsTer30	p.P1459Lfs*30	ENST00000394830	NM_018313.4	1458	ggG/gg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52675999	52675999	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	252	862	0	ENST00000394830.3:c.1058C>G	p.Ser353Ter	p.S353*	ENST00000394830	NM_018313.4	353	tCa/tGa																																																																														
VEGFA	0	MSKCC	GRCh37	6	43748514	43748514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	62	670	0	ENST00000523873.1:c.468G>C	p.Lys156Asn	p.K156N	ENST00000523873		156	aaG/aaC																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100253	157100253	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	18	213	0	ENST00000346085.5:c.1190C>G	p.Ser397Trp	p.S397W	ENST00000346085	NM_020732.3	397	tCg/tGg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509636	106509636	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	104	715	0	ENST00000359195.3:c.1630C>G	p.Arg544Gly	p.R544G	ENST00000359195	NM_002649.2	544	Cga/Gga																																																																														
BRAF	0	MSKCC	GRCh37	7	140534578	140534578	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	146	721	0	ENST00000288602.6:c.335C>G	p.Ser112Cys	p.S112C	ENST00000288602	NM_004333.4	112	tCt/tGt																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969378	44969381	+	frameshift_variant	Frame_Shift_Del	DEL	TACA	TACA	-			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	182	422	0	ENST00000377967.4:c.4062_4065delCATA	p.Tyr1354Ter	p.Y1354*	ENST00000377967	NM_021140.2	1354	TACAta/ta																																																																														
ATRX	0	MSKCC	GRCh37	X	76938961	76938961	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	231	459	0	ENST00000373344.5:c.1787C>G	p.Ser596Cys	p.S596C	ENST00000373344	NM_000489.3	596	tCt/tGt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	197	782	0				ENST00000310581	NM_198253.2																																																																																
ARID2	0	MSKCC	GRCh37	12	46244778	46244778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	67	723	4	ENST00000334344.6:c.2872C>T	p.Gln958Ter	p.Q958*	ENST00000334344	NM_152641.2	958	Cag/Tag																																																																														
ARID2	0	MSKCC	GRCh37	12	46244389	46244389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	93	649	0	ENST00000334344.6:c.2483C>G	p.Pro828Arg	p.P828R	ENST00000334344	NM_152641.2	828	cCt/cGt																																																																														
DIS3	0	MSKCC	GRCh37	13	73336102	73336102	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	57	356	0	ENST00000377767.4:c.2301A>C	p.Leu767Phe	p.L767F	ENST00000377767	NM_014953.3	767	ttA/ttC																																																																														
NF1	0	MSKCC	GRCh37	17	29509627	29509627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	40	788	0	ENST00000358273.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000358273	NM_001042492.2	278	Cca/Gca																																																																														
NF2	0	MSKCC	GRCh37	22	30069417	30069417	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	53	668	1	ENST00000338641.4:c.1282C>T	p.Gln428Ter	p.Q428*	ENST00000338641	NM_000268.3	428	Cag/Tag																																																																														
PRDM1	0	MSKCC	GRCh37	6	106555098	106555098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021795-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	202	686	3	ENST00000369096.4:c.2215G>A	p.Ala739Thr	p.A739T	ENST00000369096	NM_001198.3	739	Gct/Act																																																																														
TP53	0	MSKCC	GRCh37	17	7579315	7579315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	585	552	1	ENST00000269305.4:c.372C>A	p.Cys124Ter	p.C124*	ENST00000269305	NM_001126112.2	124	tgC/tgA																																																																														
IGF1R	0	MSKCC	GRCh37	15	99478604	99478604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	174	595	0	ENST00000268035.6:c.3246G>A	p.Met1082Ile	p.M1082I	ENST00000268035	NM_000875.3	1082	atG/atA																																																																														
INSR	0	MSKCC	GRCh37	19	7142853	7142853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	154	605	0	ENST00000302850.5:c.2516A>T	p.Tyr839Phe	p.Y839F	ENST00000302850	NM_000208.2	839	tAc/tTc																																																																														
SOX2	0	MSKCC	GRCh37	3	181430752	181430752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	188	827	0	ENST00000325404.1:c.604G>A	p.Val202Met	p.V202M	ENST00000325404	NM_003106.3	202	Gtg/Atg																																																																														
AGO2	0	MSKCC	GRCh37	8	141567259	141567259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1496	178	821	2	ENST00000220592.5:c.955G>T	p.Val319Phe	p.V319F	ENST00000220592	NM_012154.3	319	Gtt/Ttt																																																																														
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	524	876	1	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																																																														
CCND1	0	MSKCC	GRCh37	11	69465952	69465952	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	220	827	3	ENST00000227507.2:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000227507	NM_053056.2	264	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	503	749	0	ENST00000269305.4:c.527G>C	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	tGc/tCc																																																																														
NEGR1	0	MSKCC	GRCh37	1	72076781	72076781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	274	754	2	ENST00000357731.5:c.716G>A	p.Arg239His	p.R239H	ENST00000357731	NM_173808.2	239	cGc/cAc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18658227	18658227	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	14	619	0	ENST00000266497.5:c.3032C>A	p.Ala1011Asp	p.A1011D	ENST00000266497		1011	gCc/gAc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31409255	31409255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	411	634	0	ENST00000344624.3:c.3762G>T	p.Leu1254Phe	p.L1254F	ENST00000344624		1254	ttG/ttT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	109	688	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0021797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	253	905	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0021797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	79	968	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
TBX3	0	MSKCC	GRCh37	12	115112106	115112106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	45	1043	0	ENST00000257566.3:c.1634C>T	p.Thr545Met	p.T545M	ENST00000257566	NM_016569.3	545	aCg/aTg																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	297	728	0	ENST00000269305.4:c.734G>C	p.Gly245Ala	p.G245A	ENST00000269305	NM_001126112.2	245	gGc/gCc																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0021824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	181	375	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0021824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	181	375	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467952	66467952	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	149	509	0	ENST00000273854.3:c.317A>G	p.Glu106Gly	p.E106G	ENST00000273854	NM_004439.5	106	gAa/gGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	91	816	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
H3F3A	0	MSKCC	GRCh37	1	226252162	226252162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			44	11	120	0	ENST00000366813.1:c.110A>G	p.Lys37Arg	p.K37R	ENST00000366813		37	aAg/aGg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121437332	121437332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	36	1082	2	ENST00000257555.6:c.1670C>T	p.Thr557Met	p.T557M	ENST00000257555		557	aCg/aTg																																																																														
CTCF	0	MSKCC	GRCh37	16	67670628	67670628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	15	620	1	ENST00000264010.4:c.1873G>A	p.Glu625Lys	p.E625K	ENST00000264010	NM_006565.3	625	Gag/Aag																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11999000	11999000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	75	445	0	ENST00000353533.5:c.502C>T	p.Leu168Phe	p.L168F	ENST00000353533	NM_003010.3	168	Ctc/Ttc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176519337	176519337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	166	662	1	ENST00000292408.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000292408	NM_213647.1	248	cGg/cAg																																																																														
EGFR	0	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0021831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	137	624	0	ENST00000275493.2:c.2317_2319dupCAC	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																																																														
GLI1	0	MSKCC	GRCh37	12	57864355	57864355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	54	723	0	ENST00000228682.2:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000228682	NM_005269.2	611	cGg/cAg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	170	855	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	54	777	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	151	794	1	ENST00000342988.3:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000342988	NM_005359.5	351	Gat/Tat																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0021771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	144	1105	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	79	379	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
TSC2	0	MSKCC	GRCh37	16	2130352	2130352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	109	1117	2	ENST00000219476.3:c.3584C>T	p.Ala1195Val	p.A1195V	ENST00000219476	NM_000548.3	1195	gCg/gTg																																																																														
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0021771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	55	556	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																																																														
B2M	0	MSKCC	GRCh37	15	45003812	45003812	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0021771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	87	660	0	ENST00000558401.1:c.67+1G>A		p.X23_splice	ENST00000558401	NM_004048.2	23																																																																															
ARID1A	0	MSKCC	GRCh37	1	27088726	27088747	+	frameshift_variant	Frame_Shift_Del	DEL	GGACAGATACACACAGGCATGG	GGACAGATACACACAGGCATGG	-			P-0021771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	69	1095	0	ENST00000324856.7:c.2336_2357del	p.Gly779AlafsTer47	p.G779Afs*47	ENST00000324856	NM_006015.4	779	GGACAGATACACACAGGCATGGgc/gc																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873063	134873063	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	115	1127	0	ENST00000398015.3:c.1367A>T	p.Gln456Leu	p.Q456L	ENST00000398015	NM_004441.4	456	cAg/cTg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	166	660	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	191	836	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	48	384	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
PAK7	0	MSKCC	GRCh37	20	9561423	9561423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201131316		P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	327	732	1	ENST00000353224.5:c.359C>T	p.Ala120Val	p.A120V	ENST00000353224	NM_177990.2	120	gCg/gTg																																																																														
EGFR	0	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	8	495	0	ENST00000275493.2:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000275493	NM_005228.3	761	Gat/Aat																																																																														
ERBB2	0	MSKCC	GRCh37	17	37879580	37879580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	183	843	4	ENST00000269571.5:c.1955C>T	p.Thr652Met	p.T652M	ENST00000269571		652	aCg/aTg																																																																														
CREBBP	0	MSKCC	GRCh37	16	3778738	3778738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	156	933	0	ENST00000262367.5:c.6310C>T	p.Arg2104Cys	p.R2104C	ENST00000262367	NM_004380.2	2104	Cgc/Tgc																																																																														
TP53	0	MSKCC	GRCh37	17	7574018	7574035	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GCTCACGCCCACGGATCT	GCTCACGCCCACGGATCT	-			P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	92	793	0	ENST00000269305.4:c.994-2_1009del		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
APC	0	MSKCC	GRCh37	5	112137077	112137094	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCAGGTAAATAAATTATT	TCAGGTAAATAAATTATT	-			P-0021828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	48	464	0	ENST00000257430.4:c.832_834+15del		p.X278_splice	ENST00000257430	NM_000038.5	278																																																																															
RASA1	0	MSKCC	GRCh37	5	86665631	86665631	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	66	346	0	ENST00000274376.6:c.1612C>T	p.Pro538Ser	p.P538S	ENST00000274376	NM_002890.2	538	Cca/Tca																																																																														
SMAD2	0	MSKCC	GRCh37	18	45371733	45371733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	118	463	1	ENST00000262160.6:c.1258A>G	p.Lys420Glu	p.K420E	ENST00000262160	NM_005901.5	420	Aaa/Gaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0021830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	114	987	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	75	739	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																																																														
RET	0	MSKCC	GRCh37	10	43610128	43610128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	50	876	1	ENST00000355710.3:c.2080C>T	p.Arg694Trp	p.R694W	ENST00000355710	NM_020975.4	694	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7579366	7579367	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0021830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	76	976	0	ENST00000269305.4:c.320dup	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	tac/taAc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	160	810	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
LMO1	0	MSKCC	GRCh37	11	8252049	8252049	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	119	691	0	ENST00000335790.3:c.28G>T	p.Val10Leu	p.V10L	ENST00000335790	NM_002315.2	10	Gtg/Ttg																																																																														
NTRK1	0	MSKCC	GRCh37	1	156845394	156845395	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1227	68	872	3	ENST00000524377.1:c.1437_1438delinsAA	p.Glu480Lys	p.E480K	ENST00000524377	NM_002529.3	479	acCGag/acAAag																																																																														
WT1	0	MSKCC	GRCh37	11	32450061	32450061	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	102	669	0	ENST00000332351.3:c.751G>C	p.Gly251Arg	p.G251R	ENST00000332351	NM_024426.4	251	Ggc/Cgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434544	49434544	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	92	756	0	ENST00000301067.7:c.7009C>G	p.Gln2337Glu	p.Q2337E	ENST00000301067	NM_003482.3	2337	Cag/Gag																																																																														
TBX3	0	MSKCC	GRCh37	12	115111985	115111985	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	77	906	0	ENST00000257566.3:c.1755C>G	p.His585Gln	p.H585Q	ENST00000257566	NM_016569.3	585	caC/caG																																																																														
HNF1A	0	MSKCC	GRCh37	12	121426748	121426748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	188	806	0	ENST00000257555.6:c.439C>A	p.His147Asn	p.H147N	ENST00000257555		147	Cac/Aac																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911973	32911973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	32	663	0	ENST00000380152.3:c.3481G>A	p.Asp1161Asn	p.D1161N	ENST00000380152		1161	Gat/Aat																																																																														
SPRED1	0	MSKCC	GRCh37	15	38614563	38614563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	63	745	0	ENST00000299084.4:c.329G>T	p.Arg110Met	p.R110M	ENST00000299084	NM_152594.2	110	aGg/aTg																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347363	89347363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	68	977	1	ENST00000301030.4:c.5587G>A	p.Asp1863Asn	p.D1863N	ENST00000301030	NM_001256183.1	1863	Gac/Aac																																																																														
BRD4	0	MSKCC	GRCh37	19	15374334	15374334	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	124	771	1	ENST00000263377.2:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000263377	NM_058243.2	413	cGt/cTt																																																																														
SOS1	0	MSKCC	GRCh37	2	39241023	39241023	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	75	574	0	ENST00000402219.2:c.2048A>T	p.Gln683Leu	p.Q683L	ENST00000402219	NM_005633.3	683	cAg/cTg																																																																														
PAK7	0	MSKCC	GRCh37	20	9624847	9624847	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	42	676	0	ENST00000353224.5:c.130G>C	p.Ala44Pro	p.A44P	ENST00000353224	NM_177990.2	44	Gca/Cca																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467767	66467767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	37	416	0	ENST00000273854.3:c.502G>A	p.Glu168Lys	p.E168K	ENST00000273854	NM_004439.5	168	Gaa/Aaa																																																																														
FAT1	0	MSKCC	GRCh37	4	187629693	187629693	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	54	761	0	ENST00000441802.2:c.1289A>T	p.Gln430Leu	p.Q430L	ENST00000441802	NM_005245.3	430	cAg/cTg																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67522646	67522646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	35	422	1	ENST00000274335.5:c.143C>T	p.Ala48Val	p.A48V	ENST00000274335		48	gCc/gTc																																																																														
HIST1H3A	0	MSKCC	GRCh37	6	26021110	26021110	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	37	508	0	ENST00000357647.3:c.393C>G	p.Ile131Met	p.I131M	ENST00000357647	NM_003529.2	131	atC/atG																																																																														
CARD11	0	MSKCC	GRCh37	7	2962924	2962924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	98	1086	0	ENST00000396946.4:c.1984C>T	p.Pro662Ser	p.P662S	ENST00000396946	NM_032415.4	662	Cca/Tca																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521482	8521482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	79	735	1	ENST00000356435.5:c.756C>A	p.Ser252Arg	p.S252R	ENST00000356435		252	agC/agA																																																																														
KDM5C	0	MSKCC	GRCh37	X	53228265	53228265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	69	825	0	ENST00000375401.3:c.2137A>G	p.Thr713Ala	p.T713A	ENST00000375401	NM_004187.3	713	Acg/Gcg																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	404	619	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
WT1	0	MSKCC	GRCh37	11	32456566	32456566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	73	88	1	ENST00000332351.3:c.326C>A	p.Ala109Glu	p.A109E	ENST00000332351	NM_024426.4	109	gCg/gAg																																																																														
DIS3	0	MSKCC	GRCh37	13	73352336	73352336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	105	546	0	ENST00000377767.4:c.569C>A	p.Pro190Gln	p.P190Q	ENST00000377767	NM_014953.3	190	cCa/cAa																																																																														
TP53	0	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0021804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	497	785	1	ENST00000269305.4:c.743_744delinsCT	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGG/cCT																																																																														
NF1	0	MSKCC	GRCh37	17	29664523	29664523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	168	629	0	ENST00000358273.4:c.6565C>T	p.Pro2189Ser	p.P2189S	ENST00000358273	NM_001042492.2	2189	Cct/Tct																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67589563	67589586	+	inframe_deletion	In_Frame_Del	DEL	TGAAGCTGTAGGGAAAAAATTACA	TGAAGCTGTAGGGAAAAAATTACA	-			P-0021804-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	55	304	0	ENST00000274335.5:c.1330_1353del	p.Ala444_Glu451del	p.A444_E451del	ENST00000274335		442	atTGAAGCTGTAGGGAAAAAATTACAt/att																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	1047	852	2	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	140	403	3	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																																																														
NUF2	0	MSKCC	GRCh37	1	163318870	163318870	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	232	463	0	ENST00000271452.3:c.1260G>T	p.Gln420His	p.Q420H	ENST00000271452	NM_145697.2	420	caG/caT																																																																														
HNF1A	0	MSKCC	GRCh37	12	121437125	121437125	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	335	1030	0	ENST00000257555.6:c.1556C>G	p.Pro519Arg	p.P519R	ENST00000257555		519	cCg/cGg																																																																														
RB1	0	MSKCC	GRCh37	13	49039399	49039399	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	294	935	0	ENST00000267163.4:c.2384C>G	p.Ser795Ter	p.S795*	ENST00000267163	NM_000321.2	795	tCa/tGa																																																																														
CREBBP	0	MSKCC	GRCh37	16	3808010	3808010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	67	611	0	ENST00000262367.5:c.3409A>G	p.Thr1137Ala	p.T1137A	ENST00000262367	NM_004380.2	1137	Acc/Gcc																																																																														
JAK3	0	MSKCC	GRCh37	19	17950423	17950423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	226	784	0	ENST00000458235.1:c.1304C>A	p.Thr435Lys	p.T435K	ENST00000458235	NM_000215.3	435	aCa/aAa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212587236	212587236	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	326	555	0	ENST00000342788.4:c.765T>A	p.Ser255Arg	p.S255R	ENST00000342788	NM_005235.2	255	agT/agA																																																																														
ERBB4	0	MSKCC	GRCh37	2	212652831	212652831	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	31	665	0	ENST00000342788.4:c.475G>C	p.Asp159His	p.D159H	ENST00000342788	NM_005235.2	159	Gac/Cac																																																																														
CUL3	0	MSKCC	GRCh37	2	225449662	225449662	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	101	483	1	ENST00000264414.4:c.65C>T	p.Pro22Leu	p.P22L	ENST00000264414	NM_003590.4	22	cCg/cTg																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55129978	55129979	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	87	798	3	ENST00000257290.5:c.512_513delinsTA	p.Ser171Leu	p.S171L	ENST00000257290	NM_006206.4	171	tCC/tTA																																																																														
NSD1	0	MSKCC	GRCh37	5	176721882	176721882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	209	751	0	ENST00000439151.2:c.7513G>C	p.Glu2505Gln	p.E2505Q	ENST00000439151	NM_022455.4	2505	Gag/Cag																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120756	94120756	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	26	735	0	ENST00000369303.4:c.295T>G	p.Phe99Val	p.F99V	ENST00000369303	NM_004440.3	99	Ttt/Gtt																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138201364	138201364	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	238	640	0	ENST00000237289.4:c.2063A>G	p.Glu688Gly	p.E688G	ENST00000237289	NM_001270507.1	688	gAg/gGg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450356	50450356	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	91	768	0	ENST00000331340.3:c.540C>G	p.Tyr180Ter	p.Y180*	ENST00000331340	NM_006060.4	180	taC/taG																																																																														
LYN	0	MSKCC	GRCh37	8	56911020	56911020	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	317	733	0	ENST00000519728.1:c.1166C>G	p.Ala389Gly	p.A389G	ENST00000519728	NM_002350.3	389	gCt/gGt																																																																														
PREX2	0	MSKCC	GRCh37	8	68930081	68930081	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	76	514	0	ENST00000288368.4:c.142G>A	p.Ala48Thr	p.A48T	ENST00000288368	NM_024870.2	48	Gca/Aca																																																																														
EGFL7	0	MSKCC	GRCh37	9	139564384	139564395	+	inframe_deletion	In_Frame_Del	DEL	GCCGGAACGGAG	GCCGGAACGGAG	-			P-0021822-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	352	732	0	ENST00000308874.7:c.333_344del	p.Cys111_Gly115delinsTrp	p.C111_G115delinsW	ENST00000308874		111	tGCCGGAACGGAGgg/tgg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	90	744	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026112	71026112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	92	564	0	ENST00000318789.4:c.1510C>T	p.Arg504Cys	p.R504C	ENST00000318789	NM_032682.5	504	Cgc/Tgc																																																																														
STK11	0	MSKCC	GRCh37	19	1218446	1218447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	149	915	0	ENST00000326873.7:c.326dup	p.Asn109LysfsTer54	p.N109Kfs*54	ENST00000326873	NM_000455.4	107	-/A																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602754	10602754	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	173	910	5	ENST00000171111.5:c.824C>A	p.Ser275Ter	p.S275*	ENST00000171111	NM_203500.1	275	tCg/tAg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530052	212530052	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	54	339	0	ENST00000342788.4:c.1867C>T	p.Gln623Ter	p.Q623*	ENST00000342788	NM_005235.2	623	Caa/Taa																																																																														
FGFR4	0	MSKCC	GRCh37	5	176519331	176519331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	72	659	1	ENST00000292408.4:c.737C>T	p.Pro246Leu	p.P246L	ENST00000292408	NM_213647.1	246	cCg/cTg																																																																														
RBM10	0	MSKCC	GRCh37	X	47038793	47038794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	94	470	0	ENST00000329236.7:c.572dup	p.Leu192ProfsTer32	p.L192Pfs*32	ENST00000329236	NM_001204466.1	190	cag/caGg																																																																														
AMER1	0	MSKCC	GRCh37	X	63412536	63412536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021778-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	26	370	0	ENST00000330258.3:c.631G>A	p.Ala211Thr	p.A211T	ENST00000330258	NM_152424.3	211	Gcc/Acc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	1907	694	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0021805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	285	651	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt																																																																														
CDK12	0	MSKCC	GRCh37	17	37681100	37681100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	251	460	0	ENST00000447079.4:c.3269C>G	p.Ala1090Gly	p.A1090G	ENST00000447079	NM_015083.1	1090	gCt/gGt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	141	737	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0021721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	156	841	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971026	21971054	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCAGGCATCGCGCACGTCCAGCCGCGC	CCCCAGGCATCGCGCACGTCCAGCCGCGC	-			P-0021721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	111	581	0	ENST00000304494.5:c.304_332del	p.Ala102ProfsTer8	p.A102Pfs*8	ENST00000304494	NM_000077.4	102	GCGCGGCTGGACGTGCGCGATGCCTGGGGc/c																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971026	21971054	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCAGGCATCGCGCACGTCCAGCCGCGC	CCCCAGGCATCGCGCACGTCCAGCCGCGC	-			P-0021721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	111	581	0	ENST00000304494.5:c.304_332del	p.Ala102ProfsTer8	p.A102Pfs*8	ENST00000304494	NM_000077.4	102	GCGCGGCTGGACGTGCGCGATGCCTGGGGc/c																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971026	21971054	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCAGGCATCGCGCACGTCCAGCCGCGC	CCCCAGGCATCGCGCACGTCCAGCCGCGC	-			P-0021721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	111	581	0	ENST00000304494.5:c.304_332del	p.Ala102ProfsTer8	p.A102Pfs*8	ENST00000304494	NM_000077.4	102	GCGCGGCTGGACGTGCGCGATGCCTGGGGc/c																																																																														
NTRK2	0	MSKCC	GRCh37	9	87563428	87563428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	130	823	1	ENST00000277120.3:c.1816G>A	p.Glu606Lys	p.E606K	ENST00000277120		606	Gag/Aag																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	318	643	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0021734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	149	565	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																																																															
ASXL2	0	MSKCC	GRCh37	2	26068366	26068368	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0021734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	370	589	0	ENST00000435504.4:c.122_124delAAG	p.Glu41del	p.E41del	ENST00000435504		41	gAAGga/gga																																																																														
RUNX1	0	MSKCC	GRCh37	21	36206882	36206883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	217	451	0	ENST00000300305.3:c.629dup	p.Asp211ArgfsTer2	p.D211Rfs*2	ENST00000300305		210	cta/ctTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151921101	151921102	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0021734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			16	12	19	0	ENST00000262189.6:c.3321_3322del	p.Asp1107GlufsTer13	p.D1107Efs*13	ENST00000262189	NM_170606.2	1107	gaTAga/gaga																																																																														
ASXL2	0	MSKCC	GRCh37	2	25978946	25978946	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	97	672	0	ENST00000435504.4:c.977C>G	p.Ala326Gly	p.A326G	ENST00000435504		326	gCc/gGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	122	724	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
CDH1	0	MSKCC	GRCh37	16	68844175	68844175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	153	840	1	ENST00000261769.5:c.763C>T	p.Gln255Ter	p.Q255*	ENST00000261769	NM_004360.3	255	Cag/Tag																																																																														
EIF4A2	0	MSKCC	GRCh37	3	186501406	186501406	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	82	515	1	ENST00000323963.5:c.7G>C	p.Gly3Arg	p.G3R	ENST00000323963		3	Ggt/Cgt																																																																														
BCOR	0	MSKCC	GRCh37	X	39923643	39923643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021753-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	112	893	1	ENST00000378444.4:c.3448G>A	p.Glu1150Lys	p.E1150K	ENST00000378444	NM_001123385.1	1150	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	163	514	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KMT2B	0	MSKCC	GRCh37	19	36216702	36216702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	138	595	0	ENST00000222270.7:c.3868C>T	p.Arg1290Cys	p.R1290C	ENST00000222270	NM_014727.1	1290	Cgc/Tgc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427974	49427974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	232	687	0	ENST00000301067.7:c.10616G>A	p.Arg3539Gln	p.R3539Q	ENST00000301067	NM_003482.3	3539	cGg/cAg																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509444	106509444	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021728-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	227	732	0	ENST00000359195.3:c.1438T>C	p.Tyr480His	p.Y480H	ENST00000359195	NM_002649.2	480	Tac/Cac																																																																														
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	124	719	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																																																														
CDK12	0	MSKCC	GRCh37	17	37627306	37627307	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0021757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	37	636	0	ENST00000447079.4:c.1233_1235dupTGC	p.Ala413dup	p.A413dup	ENST00000447079	NM_015083.1	413	-/GCT																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31379407	31379407	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0021757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	337	587	0	ENST00000328111.2:c.814G>C	p.Val272Leu	p.V272L	ENST00000328111	NM_006892.3	272	Gtc/Ctc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	179	476	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CDH1	0	MSKCC	GRCh37	16	68835794	68835794	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0021745-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	267	654	0	ENST00000261769.5:c.385C>T	p.Gln129Ter	p.Q129*	ENST00000261769	NM_004360.3	129	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	368	718	2	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
JAK3	0	MSKCC	GRCh37	19	17951110	17951110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	77	822	0	ENST00000458235.1:c.1183C>T	p.Arg395Cys	p.R395C	ENST00000458235	NM_000215.3	395	Cgt/Tgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0021718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	201	967	2	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																																																														
AMER1	0	MSKCC	GRCh37	X	63411063	63411063	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	166	876	0	ENST00000330258.3:c.2104G>T	p.Glu702Ter	p.E702*	ENST00000330258	NM_152424.3	702	Gag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1207092	1207092	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	153	1056	2	ENST00000326873.7:c.180C>A	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/taA																																																																														
DDR2	0	MSKCC	GRCh37	1	162748520	162748520	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0021718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	38	463	0	ENST00000367921.3:c.2433+1G>C		p.X811_splice	ENST00000367921	NM_006182.2	811																																																																															
KEAP1	0	MSKCC	GRCh37	19	10600473	10600473	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021718-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	135	819	0	ENST00000171111.5:c.1382T>G	p.Ile461Ser	p.I461S	ENST00000171111	NM_203500.1	461	aTc/aGc																																																																														
TP53	0	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	394	694	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25462022	25462022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	223	660	0	ENST00000264709.3:c.2385G>T	p.Trp795Cys	p.W795C	ENST00000264709	NM_175629.2	795	tgG/tgT																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64129199	64129199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	218	828	0	ENST00000334205.4:c.737C>T	p.Thr246Met	p.T246M	ENST00000334205	NM_003942.2	246	aCg/aTg																																																																														
MTOR	0	MSKCC	GRCh37	1	11259723	11259723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	330	567	0	ENST00000361445.4:c.3982G>C	p.Glu1328Gln	p.E1328Q	ENST00000361445	NM_004958.3	1328	Gaa/Caa																																																																														
ETV6	0	MSKCC	GRCh37	12	12006401	12006401	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	275	741	0	ENST00000396373.4:c.369G>C	p.Gln123His	p.Q123H	ENST00000396373	NM_001987.4	123	caG/caC																																																																														
KMT2D	0	MSKCC	GRCh37	12	49433362	49433362	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	187	842	0	ENST00000301067.7:c.8085C>G	p.Ile2695Met	p.I2695M	ENST00000301067	NM_003482.3	2695	atC/atG																																																																														
RB1	0	MSKCC	GRCh37	13	49037951	49037951	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	358	703	0	ENST00000267163.4:c.2191C>G	p.Leu731Val	p.L731V	ENST00000267163	NM_000321.2	731	Ctt/Gtt																																																																														
RB1	0	MSKCC	GRCh37	13	49039202	49039202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	489	674	0	ENST00000267163.4:c.2280C>A	p.Phe760Leu	p.F760L	ENST00000267163	NM_000321.2	760	ttC/ttA																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680646	88680646	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	591	614	1	ENST00000360948.2:c.611T>A	p.Ile204Asn	p.I204N	ENST00000360948	NM_001012338.2	204	aTc/aAc																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857413	9857413	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	339	642	0	ENST00000330684.3:c.3988A>T	p.Ser1330Cys	p.S1330C	ENST00000330684	NM_001134407.1	1330	Agt/Tgt																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15271674	15271674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	264	1066	1	ENST00000263388.2:c.6765G>T	p.Trp2255Cys	p.W2255C	ENST00000263388	NM_000435.2	2255	tgG/tgT																																																																														
MEF2B	0	MSKCC	GRCh37	19	19260062	19260062	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	508	879	0	ENST00000162023.5:c.231G>T	p.Glu77Asp	p.E77D	ENST00000162023		77	gaG/gaT																																																																														
ASXL2	0	MSKCC	GRCh37	2	25990551	25990551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	159	781	0	ENST00000435504.4:c.676C>G	p.Gln226Glu	p.Q226E	ENST00000435504		226	Caa/Gaa																																																																														
ERBB4	0	MSKCC	GRCh37	2	212566838	212566838	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	134	443	1	ENST00000342788.4:c.1343A>T	p.Gln448Leu	p.Q448L	ENST00000342788	NM_005235.2	448	cAg/cTg																																																																														
FOXP1	0	MSKCC	GRCh37	3	71026981	71026981	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	604	622	0	ENST00000318789.4:c.1346C>G	p.Ser449Ter	p.S449*	ENST00000318789	NM_032682.5	449	tCa/tGa																																																																														
ATR	0	MSKCC	GRCh37	3	142215889	142215890	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	414	568	1	ENST00000350721.4:c.5703_5704delinsTT	p.Ala1902Ser	p.A1902S	ENST00000350721	NM_001184.3	1901	ctGGct/ctTTct																																																																														
MAP3K13	0	MSKCC	GRCh37	3	185155374	185155374	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	141	555	0	ENST00000265026.3:c.615C>G	p.Ile205Met	p.I205M	ENST00000265026	NM_004721.4	205	atC/atG																																																																														
FAT1	0	MSKCC	GRCh37	4	187628314	187628314	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			99	523	746	0	ENST00000441802.2:c.2668G>T	p.Glu890Ter	p.E890*	ENST00000441802	NM_005245.3	890	Gag/Tag																																																																														
RICTOR	0	MSKCC	GRCh37	5	38982001	38982001	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	231	693	0	ENST00000357387.3:c.721C>G	p.Arg241Gly	p.R241G	ENST00000357387	NM_152756.3	241	Cga/Gga																																																																														
HIST1H3H	0	MSKCC	GRCh37	6	27777889	27777889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	410	464	0	ENST00000369163.2:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369163	NM_003536.2	13	gGc/gAc																																																																														
MDC1	0	MSKCC	GRCh37	6	30671002	30671002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	500	777	3	ENST00000376406.3:c.5744G>A	p.Ser1915Asn	p.S1915N	ENST00000376406	NM_014641.2	1915	aGt/aAt																																																																														
MDC1	0	MSKCC	GRCh37	6	30672305	30672305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	449	782	0	ENST00000376406.3:c.4655C>T	p.Thr1552Ile	p.T1552I	ENST00000376406	NM_014641.2	1552	aCa/aTa																																																																														
PARK2	0	MSKCC	GRCh37	6	161771169	161771169	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	833	756	1	ENST00000366898.1:c.1360A>T	p.Asn454Tyr	p.N454Y	ENST00000366898	NM_004562.2	454	Aac/Tac																																																																														
PMS2	0	MSKCC	GRCh37	7	6038907	6038907	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	247	543	1	ENST00000265849.7:c.538-1G>T		p.X180_splice	ENST00000265849	NM_000535.5	180																																																																															
XRCC2	0	MSKCC	GRCh37	7	152345858	152345858	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	397	775	0	ENST00000359321.1:c.712A>T	p.Arg238Trp	p.R238W	ENST00000359321	NM_005431.1	238	Agg/Tgg																																																																														
LYN	0	MSKCC	GRCh37	8	56859043	56859043	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	140	741	0	ENST00000519728.1:c.169C>T	p.Gln57Ter	p.Q57*	ENST00000519728	NM_002350.3	57	Caa/Taa																																																																														
PREX2	0	MSKCC	GRCh37	8	68864657	68864657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	111	288	0	ENST00000288368.4:c.28C>A	p.Arg10Ser	p.R10S	ENST00000288368	NM_024870.2	10	Cgc/Agc																																																																														
JAK2	0	MSKCC	GRCh37	9	5080684	5080684	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	115	602	0	ENST00000381652.3:c.2434+1G>C		p.X812_splice	ENST00000381652	NM_004972.3	812																																																																															
ABL1	0	MSKCC	GRCh37	9	133750362	133750362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	412	692	3	ENST00000318560.5:c.1193G>T	p.Gly398Val	p.G398V	ENST00000318560	NM_005157.4	398	gGa/gTa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399774	139399790	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGCACGCTGGCAGTC	TCCGCACGCTGGCAGTC	-			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	204	626	0	ENST00000277541.6:c.4558_4574del	p.Asp1520ArgfsTer84	p.D1520Rfs*84	ENST00000277541	NM_017617.3	1520	GACTGCCAGCGTGCGGAa/a																																																																														
MED12	0	MSKCC	GRCh37	X	70338683	70338683	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	601	381	0	ENST00000374080.3:c.79C>T	p.Gln27Ter	p.Q27*	ENST00000374080		27	Cag/Tag																																																																														
ATRX	0	MSKCC	GRCh37	X	76938463	76938463	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021748-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	99	640	0	ENST00000373344.5:c.2285del	p.Lys762ArgfsTer6	p.K762Rfs*6	ENST00000373344	NM_000489.3	762	aAg/ag																																																																														
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	191	531	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																																																														
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	234	540	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	135	400	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	222	739	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																																																														
FOXP1	0	MSKCC	GRCh37	3	71101751	71101751	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	93	319	1	ENST00000318789.4:c.447del	p.Lys149AsnfsTer57	p.K149Nfs*57	ENST00000318789	NM_032682.5	149	aaA/aa																																																																														
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	200	654	3	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																																																														
PTEN	0	MSKCC	GRCh37	10	89717749	89717749	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	330	491	0	ENST00000371953.3:c.775del	p.His259ThrfsTer7	p.H259Tfs*7	ENST00000371953	NM_000314.4	258	ttC/tt																																																																														
FOXP1	0	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	218	512	0	ENST00000318789.4:c.1240delC	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg																																																																														
APC	0	MSKCC	GRCh37	5	112173323	112173323	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	117	351	0	ENST00000257430.4:c.2032A>G	p.Ser678Gly	p.S678G	ENST00000257430	NM_000038.5	678	Agt/Ggt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8636766	8636766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	173	638	0	ENST00000356435.5:c.143C>T	p.Thr48Met	p.T48M	ENST00000356435		48	aCg/aTg																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	205	687	2	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																																																														
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	221	695	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71939797	71939797	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	296	680	2	ENST00000298229.2:c.428del	p.Pro143ArgfsTer36	p.P143Rfs*36	ENST00000298229	NM_001567.3	142	Ccc/cc																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852350	63852352	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	186	544	0	ENST00000279873.7:c.3130_3132del	p.Glu1044del	p.E1044del	ENST00000279873	NM_032199.2	1043	aAGGag/aag																																																																														
INPPL1	3636	MSKCC	GRCh37	11	71942558	71942559	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	221	470	0	ENST00000298229.2:c.1516_1517del	p.Trp506GlufsTer45	p.W506Efs*45	ENST00000298229	NM_001567.3	505	cTG/c																																																																														
LATS2	0	MSKCC	GRCh37	13	21563290	21563290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	330	790	1	ENST00000382592.4:c.629C>T	p.Pro210Leu	p.P210L	ENST00000382592	NM_014572.2	210	cCg/cTg																																																																														
RB1	0	MSKCC	GRCh37	13	48953734	48953734	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	148	375	1	ENST00000267163.4:c.1337A>G	p.Tyr446Cys	p.Y446C	ENST00000267163	NM_000321.2	446	tAc/tGc																																																																														
CYSLTR2	0	MSKCC	GRCh37	13	49280954	49280954	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	31	553	0	ENST00000282018.3:c.1A>G	p.Met1?	p.M1?	ENST00000282018	NM_020377.2	1	Atg/Gtg																																																																														
IRS2	0	MSKCC	GRCh37	13	110435751	110435751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	89	168	0	ENST00000375856.3:c.2650C>T	p.Arg884Cys	p.R884C	ENST00000375856	NM_003749.2	884	Cgc/Tgc																																																																														
BLM	0	MSKCC	GRCh37	15	91303942	91303942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	191	700	0	ENST00000355112.3:c.1339G>T	p.Gly447Trp	p.G447W	ENST00000355112	NM_000057.2	447	Ggg/Tgg																																																																														
SLX4	0	MSKCC	GRCh37	16	3652192	3652192	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	342	840	1	ENST00000294008.3:c.877T>A	p.Leu293Met	p.L293M	ENST00000294008	NM_032444.2	293	Ttg/Atg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48584823	48584823	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	187	438	0	ENST00000342988.3:c.901T>A	p.Tyr301Asn	p.Y301N	ENST00000342988	NM_005359.5	301	Tac/Aac																																																																														
CALR	0	MSKCC	GRCh37	19	13054604	13054605	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAG			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	135	396	0	ENST00000316448.5:c.1142_1144dup	p.Glu381dup	p.E381dup	ENST00000316448	NM_004343.3	381	-/GAG																																																																														
ALK	0	MSKCC	GRCh37	2	29541195	29541195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	209	650	0	ENST00000389048.3:c.1622C>T	p.Ala541Val	p.A541V	ENST00000389048	NM_004304.4	541	gCa/gTa																																																																														
GSK3B	0	MSKCC	GRCh37	3	119812281	119812281	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	173	439	0	ENST00000316626.5:c.1A>T	p.Met1?	p.M1?	ENST00000316626		1	Atg/Ttg																																																																														
GATA2	0	MSKCC	GRCh37	3	128204900	128204902	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	358	903	0	ENST00000341105.2:c.539_541del	p.Glu180del	p.E180del	ENST00000341105	NM_032638.4	180	gAAGtg/gtg																																																																														
MSH3	0	MSKCC	GRCh37	5	80109476	80109476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	191	690	0	ENST00000265081.6:c.2729C>T	p.Ala910Val	p.A910V	ENST00000265081	NM_002439.4	910	gCa/gTa																																																																														
APC	0	MSKCC	GRCh37	5	112174728	112174728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	105	390	0	ENST00000257430.4:c.3437G>A	p.Arg1146His	p.R1146H	ENST00000257430	NM_000038.5	1146	cGt/cAt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80537237	80537237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	190	770	0	ENST00000286548.4:c.161C>T	p.Thr54Met	p.T54M	ENST00000286548	NM_002072.3	54	aCg/aTg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98209303	98209303	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	256	747	1	ENST00000331920.6:c.4235C>A	p.Pro1412His	p.P1412H	ENST00000331920	NM_000264.3	1412	cCc/cAc																																																																														
CRLF2	0	MSKCC	GRCh37	X	1325426	1325426	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	228	586	0	ENST00000381566.1:c.249del	p.Cys84AlafsTer3	p.C84Afs*3	ENST00000381566		83	ggG/gg																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794117	242794117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	329	1013	0	ENST00000334409.5:c.611G>A	p.Arg204His	p.R204H	ENST00000334409	NM_005018.2	204	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0021724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	262	804	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332																																																																															
DIS3	0	MSKCC	GRCh37	13	73352418	73352418	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	104	861	1	ENST00000377767.4:c.487delA	p.Met163CysfsTer12	p.M163Cfs*12	ENST00000377767	NM_014953.3	163	Atg/tg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46268731	46268731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1366	229	865	0	ENST00000371998.3:c.3016C>G	p.Gln1006Glu	p.Q1006E	ENST00000371998		1006	Caa/Gaa																																																																														
APC	0	MSKCC	GRCh37	5	112175137	112175143	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGAA	AGCTGAA	-			P-0021724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	229	418	0	ENST00000257430.4:c.3846_3852del	p.Ala1283MetfsTer3	p.A1283Mfs*3	ENST00000257430	NM_000038.5	1282	tcAGCTGAA/tc																																																																														
AR	0	MSKCC	GRCh37	X	66931352	66931352	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	93	891	0	ENST00000374690.3:c.1994T>A	p.Ile665Asn	p.I665N	ENST00000374690	NM_000044.3	665	aTt/aAt																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	132	738	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	49	824	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
RBM10	0	MSKCC	GRCh37	X	47038756	47038756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	48	1037	0	ENST00000329236.7:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000329236	NM_001204466.1	178	Cag/Tag																																																																														
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	147	560	0	ENST00000288135.5:c.1676T>G	p.Val559Gly	p.V559G	ENST00000288135	NM_000222.2	559	gTt/gGt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49438008	49438008	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	51	867	0	ENST00000301067.7:c.5163G>C	p.Leu1721Phe	p.L1721F	ENST00000301067	NM_003482.3	1721	ttG/ttC																																																																														
TEK	0	MSKCC	GRCh37	9	27158103	27158103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	149	734	0	ENST00000380036.4:c.327G>C	p.Glu109Asp	p.E109D	ENST00000380036	NM_000459.3	109	gaG/gaC																																																																														
CSDE1	0	MSKCC	GRCh37	1	115272914	115272916	+	frameshift_variant	Frame_Shift_Del	DEL	GAT	GAT	T			P-0021758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	197	771	1	ENST00000438362.2:c.1458_1459delTC	p.Pro487Ter	p.P487*	ENST00000438362	NM_001242891.1	487	aATCct/aAct																																																																														
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0021742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	319	670	1	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PIK3C2G	0	MSKCC	GRCh37	12	18443818	18443818	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	49	572	0	ENST00000266497.5:c.791T>G	p.Val264Gly	p.V264G	ENST00000266497		264	gTt/gGt																																																																														
BRCA1	0	MSKCC	GRCh37	17	41243606	41243640	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCTGGGTGTTTGTATTTGCAGTCAAGTCTTCCA	ATCCTGGGTGTTTGTATTTGCAGTCAAGTCTTCCA	-			P-0021742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	585	830	0	ENST00000357654.3:c.3908_3942del	p.Leu1303SerfsTer15	p.L1303Sfs*15	ENST00000357654	NM_007294.3	1303	tTGGAAGACTTGACTGCAAATACAAACACCCAGGAT/t																																																																														
PTPRS	0	MSKCC	GRCh37	19	5218521	5218521	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021742-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	235	973	0	ENST00000357368.4:c.3958del	p.Arg1320AlafsTer6	p.R1320Afs*6	ENST00000357368	NM_002850.3	1320	Cgc/gc																																																																														
TCEB1	0	MSKCC	GRCh37	8	74868172	74868172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	15	194	0	ENST00000284811.8:c.122C>T	p.Thr41Met	p.T41M	ENST00000284811		41	aCg/aTg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696435	47696435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	245	1082	0	ENST00000347630.2:c.388G>A	p.Asp130Asn	p.D130N	ENST00000347630	NM_001007230.1	130	Gac/Aac																																																																														
AGO2	0	MSKCC	GRCh37	8	141595381	141595381	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	332	1147	0	ENST00000220592.5:c.52A>T	p.Ile18Phe	p.I18F	ENST00000220592	NM_012154.3	18	Atc/Ttc																																																																														
DNMT3A	0	MSKCC	GRCh37	2	25457243	25457243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	31	735	1	ENST00000264709.3:c.2644C>T	p.Arg882Cys	p.R882C	ENST00000264709	NM_175629.2	882	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0021730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	104	644	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	13	610	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	183	848	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																																																														
SMO	0	MSKCC	GRCh37	7	128845518	128845518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	54	866	1	ENST00000249373.3:c.815C>T	p.Ala272Val	p.A272V	ENST00000249373	NM_005631.4	272	gCg/gTg																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106400	27106405	+	inframe_deletion	In_Frame_Del	DEL	ACCCAG	ACCCAG	-			P-0021700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	128	612	0	ENST00000324856.7:c.6011_6016del	p.His2004_Gly2006delinsArg	p.H2004_G2006delinsR	ENST00000324856	NM_006015.4	2004	cACCCAGgg/cgg																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9934873	9934873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	72	858	0	ENST00000330684.3:c.1417T>C	p.Phe473Leu	p.F473L	ENST00000330684	NM_001134407.1	473	Ttt/Ctt																																																																														
PRKCI	0	MSKCC	GRCh37	3	170002257	170002257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	58	232	0	ENST00000295797.4:c.1076C>G	p.Ser359Cys	p.S359C	ENST00000295797	NM_002740.5	359	tCt/tGt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8528630	8528630	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021700-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	46	542	0	ENST00000356435.5:c.502A>C	p.Thr168Pro	p.T168P	ENST00000356435		168	Aca/Cca																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	221	857	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	130	657	0				ENST00000310581	NM_198253.2																																																																																
FOXL2	0	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	192	1066	0	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag																																																																														
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	79	714	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247244	153247244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	196	587	0	ENST00000281708.4:c.1558G>A	p.Asp520Asn	p.D520N	ENST00000281708	NM_033632.3	520	Gat/Aat																																																																														
ERCC2	0	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	257	883	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
SOX17	0	MSKCC	GRCh37	8	55370798	55370798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	66	852	1	ENST00000297316.4:c.100G>A	p.Glu34Lys	p.E34K	ENST00000297316	NM_022454.3	34	Gag/Aag																																																																														
FH	0	MSKCC	GRCh37	1	241683007	241683007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	114	641	0	ENST00000366560.3:c.16C>T	p.Arg6Trp	p.R6W	ENST00000366560	NM_000143.3	6	Cgg/Tgg																																																																														
H3F3B	0	MSKCC	GRCh37	17	73774771	73774771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	148	741	0	ENST00000254810.4:c.316G>A	p.Glu106Lys	p.E106K	ENST00000254810	NM_005324.3	106	Gaa/Aaa																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807890	1807890	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	188	889	0	ENST00000260795.2:c.1949A>T	p.Lys650Met	p.K650M	ENST00000260795		650	aAg/aTg																																																																														
RAD51C	0	MSKCC	GRCh37	17	56774148	56774148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	210	805	2	ENST00000337432.4:c.499G>A	p.Asp167Asn	p.D167N	ENST00000337432	NM_058216.2	167	Gat/Aat																																																																														
NSD1	0	MSKCC	GRCh37	5	176686992	176686992	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	173	521	1	ENST00000439151.2:c.4969C>T	p.Arg1657Trp	p.R1657W	ENST00000439151	NM_022455.4	1657	Cgg/Tgg																																																																														
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	100	1011	1	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																																																														
PPARG	0	MSKCC	GRCh37	3	12475599	12475599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	251	650	1	ENST00000287820.6:c.1473G>A	p.Met491Ile	p.M491I	ENST00000287820	NM_015869.4	491	atG/atA																																																																														
CDK12	0	MSKCC	GRCh37	17	37618337	37618337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	29	303	0	ENST00000447079.4:c.13G>A	p.Glu5Lys	p.E5K	ENST00000447079	NM_015083.1	5	Gag/Aag																																																																														
CSF3R	0	MSKCC	GRCh37	1	36933187	36933187	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	93	874	0	ENST00000361632.4:c.1930G>T	p.Gly644Ter	p.G644*	ENST00000361632		644	Gga/Tga																																																																														
RET	0	MSKCC	GRCh37	10	43608372	43608372	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	94	1207	2	ENST00000355710.3:c.1720G>T	p.Glu574Ter	p.E574*	ENST00000355710	NM_020975.4	574	Gag/Tag																																																																														
ARID5B	0	MSKCC	GRCh37	10	63852605	63852605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	59	648	1	ENST00000279873.7:c.3383G>A	p.Arg1128Lys	p.R1128K	ENST00000279873	NM_032199.2	1128	aGa/aAa																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64127829	64127829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	186	886	0	ENST00000334205.4:c.322G>A	p.Asp108Asn	p.D108N	ENST00000334205	NM_003942.2	108	Gat/Aat																																																																														
MRE11A	0	MSKCC	GRCh37	11	94189500	94189500	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	218	570	0	ENST00000323929.3:c.1505G>C	p.Arg502Pro	p.R502P	ENST00000323929	NM_005591.3	502	cGt/cCt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49419998	49419998	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	70	637	0	ENST00000301067.7:c.15751G>T	p.Glu5251Ter	p.E5251*	ENST00000301067	NM_003482.3	5251	Gag/Tag																																																																														
KMT2D	0	MSKCC	GRCh37	12	49420870	49420870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	64	681	0	ENST00000301067.7:c.14879G>A	p.Arg4960Gln	p.R4960Q	ENST00000301067	NM_003482.3	4960	cGa/cAa																																																																														
LATS2	0	MSKCC	GRCh37	13	21565530	21565530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	57	702	0	ENST00000382592.4:c.356G>A	p.Arg119Gln	p.R119Q	ENST00000382592	NM_014572.2	119	cGa/cAa																																																																														
CDK8	0	MSKCC	GRCh37	13	26923320	26923320	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	108	380	1	ENST00000381527.3:c.315+1G>A		p.X105_splice	ENST00000381527	NM_001260.1	105																																																																															
TSHR	0	MSKCC	GRCh37	14	81528539	81528539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	46	555	0	ENST00000298171.2:c.218C>T	p.Ser73Phe	p.S73F	ENST00000298171	NM_000369.2	73	tCt/tTt																																																																														
GREM1	0	MSKCC	GRCh37	15	33023163	33023163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	144	665	0	ENST00000300177.4:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000300177	NM_001191322.1	91	cGa/cAa																																																																														
KNSTRN	0	MSKCC	GRCh37	15	40679401	40679401	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	173	706	0	ENST00000249776.8:c.479G>C	p.Arg160Thr	p.R160T	ENST00000249776	NM_033286.3	160	aGa/aCa																																																																														
MGA	0	MSKCC	GRCh37	15	42000307	42000325	+	frameshift_variant	Frame_Shift_Del	DEL	GGATTTCCCTTTGTTTCTA	GGATTTCCCTTTGTTTCTA	-			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	135	597	0	ENST00000219905.7:c.2329_2347del	p.Phe777GlnfsTer34	p.F777Qfs*34	ENST00000219905	NM_001164273.1	776	GGATTTCCCTTTGTTTCTAgg/gg																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43766883	43766883	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	51	353	0	ENST00000382044.4:c.1168G>C	p.Glu390Gln	p.E390Q	ENST00000382044	NM_001141980.1	390	Gaa/Caa																																																																														
CDK12	0	MSKCC	GRCh37	17	37618598	37618598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	70	600	0	ENST00000447079.4:c.274G>C	p.Asp92His	p.D92H	ENST00000447079	NM_015083.1	92	Gac/Cac																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805715	46805715	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	175	832	1	ENST00000290295.7:c.241G>A	p.Gly81Ser	p.G81S	ENST00000290295	NM_006361.5	81	Ggt/Agt																																																																														
DOT1L	0	MSKCC	GRCh37	19	2191188	2191188	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	351	936	1	ENST00000398665.3:c.442A>T	p.Ile148Phe	p.I148F	ENST00000398665	NM_032482.2	148	Att/Ttt																																																																														
MYCN	0	MSKCC	GRCh37	2	16082388	16082388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	250	1029	2	ENST00000281043.3:c.202G>A	p.Ala68Thr	p.A68T	ENST00000281043	NM_005378.4	68	Gcg/Acg																																																																														
SOS1	0	MSKCC	GRCh37	2	39239313	39239313	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	354	869	0	ENST00000402219.2:c.2344A>T	p.Ile782Leu	p.I782L	ENST00000402219	NM_005633.3	782	Ata/Tta																																																																														
CASP8	0	MSKCC	GRCh37	2	202123070	202123070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	37	478	2	ENST00000358485.4:c.116C>T	p.Ser39Leu	p.S39L	ENST00000358485	NM_001080125.1	39	tCg/tTg																																																																														
IDH1	0	MSKCC	GRCh37	2	209101817	209101817	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	205	756	0	ENST00000345146.2:c.1231C>T	p.Gln411Ter	p.Q411*	ENST00000345146	NM_005896.2	411	Cag/Tag																																																																														
GNAS	0	MSKCC	GRCh37	20	57466842	57466842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	59	698	1	ENST00000371085.3:c.61G>A	p.Glu21Lys	p.E21K	ENST00000371085	NM_000516.4	21	Gag/Aag																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45655413	45655413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	77	958	0	ENST00000407780.3:c.439C>T	p.His147Tyr	p.H147Y	ENST00000407780	NM_001283052.1	147	Cac/Tac																																																																														
MAPK1	0	MSKCC	GRCh37	22	22127165	22127165	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	112	587	0	ENST00000215832.6:c.963C>G	p.Asp321Glu	p.D321E	ENST00000215832	NM_002745.4	321	gaC/gaG																																																																														
MST1R	0	MSKCC	GRCh37	3	49924826	49924826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	50	1038	2	ENST00000296474.3:c.4117G>A	p.Val1373Met	p.V1373M	ENST00000296474	NM_002447.2	1373	Gtg/Atg																																																																														
PBRM1	0	MSKCC	GRCh37	3	52584476	52584476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	271	726	1	ENST00000394830.3:c.4537G>A	p.Glu1513Lys	p.E1513K	ENST00000394830	NM_018313.4	1513	Gag/Aag																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803117	1803117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	195	943	0	ENST00000260795.2:c.469G>A	p.Glu157Lys	p.E157K	ENST00000260795		157	Gag/Aag																																																																														
FGFR3	0	MSKCC	GRCh37	4	1807568	1807568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	222	961	0	ENST00000260795.2:c.1737C>G	p.Phe579Leu	p.F579L	ENST00000260795		579	ttC/ttG																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55156479	55156479	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	166	473	0	ENST00000257290.5:c.2881-1G>C		p.X961_splice	ENST00000257290	NM_006206.4	961																																																																															
KDR	0	MSKCC	GRCh37	4	55971101	55971101	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	237	701	0	ENST00000263923.4:c.1696A>C	p.Ser566Arg	p.S566R	ENST00000263923	NM_002253.2	566	Agc/Cgc																																																																														
RASA1	0	MSKCC	GRCh37	5	86681180	86681180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	163	522	0	ENST00000274376.6:c.2821G>A	p.Ala941Thr	p.A941T	ENST00000274376	NM_002890.2	941	Gca/Aca																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652083	36652099	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGGCCTTGGCCTGCC	CGGGGCCTTGGCCTGCC	-			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	278	894	0	ENST00000244741.5:c.206_222del	p.Arg69GlnfsTer14	p.R69Qfs*14	ENST00000244741	NM_000389.4	69	CGGGGCCTTGGCCTGCCc/c																																																																														
EGFR	0	MSKCC	GRCh37	7	55268026	55268026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	220	782	0	ENST00000275493.2:c.2866G>A	p.Asp956Asn	p.D956N	ENST00000275493	NM_005228.3	956	Gat/Aat																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737407	145737407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	187	870	1	ENST00000428558.2:c.3280G>A	p.Glu1094Lys	p.E1094K	ENST00000428558	NM_004260.3	1094	Gag/Aag																																																																														
JAK2	0	MSKCC	GRCh37	9	5044518	5044518	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	174	524	0	ENST00000381652.3:c.466C>T	p.Gln156Ter	p.Q156*	ENST00000381652	NM_004972.3	156	Cag/Tag																																																																														
ABL1	0	MSKCC	GRCh37	9	133760969	133760969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021642-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	301	874	1	ENST00000318560.5:c.3292C>T	p.Gln1098Ter	p.Q1098*	ENST00000318560	NM_005157.4	1098	Cag/Tag																																																																														
SPOP	0	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	211	831	0	ENST00000347630.2:c.259T>G	p.Tyr87Asp	p.Y87D	ENST00000347630	NM_001007230.1	87	Tac/Gac																																																																														
REL	0	MSKCC	GRCh37	2	61149329	61149329	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	135	484	0	ENST00000295025.8:c.1519G>T	p.Gly507Ter	p.G507*	ENST00000295025	NM_002908.2	507	Gga/Tga																																																																														
PTPRT	0	MSKCC	GRCh37	20	40735478	40735478	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	203	1030	0	ENST00000373198.4:c.3395T>C	p.Phe1132Ser	p.F1132S	ENST00000373198	NM_133170.3	1132	tTc/tCc																																																																														
APC	0	MSKCC	GRCh37	5	112157641	112157647	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAACT	TGAAACT	-			P-0021627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	227	757	0	ENST00000257430.4:c.1362_1368del	p.Met454IlefsTer11	p.M454Ifs*11	ENST00000257430	NM_000038.5	454	aTGAAACTt/at																																																																														
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	385	800	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577573	7577573	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0021601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	186	724	0	ENST00000269305.4:c.708C>G	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taC/taG																																																																														
ATM	0	MSKCC	GRCh37	11	108121729	108121729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	117	683	0	ENST00000278616.4:c.1537C>T	p.Gln513Ter	p.Q513*	ENST00000278616	NM_000051.3	513	Cag/Tag																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920369	134920369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	139	620	0	ENST00000398015.3:c.2184C>G	p.Ile728Met	p.I728M	ENST00000398015	NM_004441.4	728	atC/atG																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32171564	32171564	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	342	763	0	ENST00000375023.3:c.3214A>T	p.Ile1072Phe	p.I1072F	ENST00000375023	NM_004557.3	1072	Atc/Ttc																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38184352	38184352	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	124	598	0	ENST00000317025.8:c.1604T>G	p.Ile535Arg	p.I535R	ENST00000317025	NM_023034.1	535	aTa/aGa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139401825	139401825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021601-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	2550	928	1	ENST00000277541.6:c.3575G>T	p.Cys1192Phe	p.C1192F	ENST00000277541	NM_017617.3	1192	tGc/tTc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	28	546	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KIT	0	MSKCC	GRCh37	4	55599321	55599321	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	24	551	0	ENST00000288135.5:c.2447A>T	p.Asp816Val	p.D816V	ENST00000288135	NM_000222.2	816	gAc/gTc																																																																														
KIT	0	MSKCC	GRCh37	4	55599338	55599338	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	226	506	0	ENST00000288135.5:c.2464A>T	p.Asn822Tyr	p.N822Y	ENST00000288135	NM_000222.2	822	Aat/Tat																																																																														
KIT	0	MSKCC	GRCh37	4	55592202	55592202	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	24	491	0	ENST00000288135.5:c.1526A>T	p.Lys509Ile	p.K509I	ENST00000288135	NM_000222.2	509	aAa/aTa																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450270	50450270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021646-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	21	554	0	ENST00000331340.3:c.454G>T	p.Ala152Ser	p.A152S	ENST00000331340	NM_006060.4	152	Gcc/Tcc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061232	38061232	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	73	947	0	ENST00000250448.2:c.757A>G	p.Met253Val	p.M253V	ENST00000250448	NM_004496.3	253	Atg/Gtg																																																																														
GNA11	0	MSKCC	GRCh37	19	3094679	3094679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	117	631	0	ENST00000078429.4:c.30C>G	p.Cys10Trp	p.C10W	ENST00000078429	NM_002067.2	10	tgC/tgG																																																																														
MSH6	0	MSKCC	GRCh37	2	48025955	48025955	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	160	608	0	ENST00000234420.5:c.833T>G	p.Ile278Arg	p.I278R	ENST00000234420	NM_000179.2	278	aTa/aGa																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	35	321	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	71	505	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																																																														
SPOP	0	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	89	518	0	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857896	9857896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	39	566	0	ENST00000330684.3:c.3505C>T	p.Arg1169Trp	p.R1169W	ENST00000330684	NM_001134407.1	1169	Cgg/Tgg																																																																														
PTEN	0	MSKCC	GRCh37	10	89624266	89624268	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0021649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	23	342	0	ENST00000371953.3:c.42_44del	p.Arg15del	p.R15del	ENST00000371953	NM_000314.4	14	AGG/-																																																																														
PTEN	0	MSKCC	GRCh37	10	89692820	89692820	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	16	281	0	ENST00000371953.3:c.304A>T	p.Lys102Ter	p.K102*	ENST00000371953	NM_000314.4	102	Aaa/Taa																																																																														
SH2B3	0	MSKCC	GRCh37	12	111855999	111855999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	87	720	0	ENST00000341259.2:c.50C>T	p.Ala17Val	p.A17V	ENST00000341259	NM_005475.2	17	gCc/gTc																																																																														
TP63	0	MSKCC	GRCh37	3	189526253	189526253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	58	678	0	ENST00000264731.3:c.517G>A	p.Gly173Ser	p.G173S	ENST00000264731	NM_003722.4	173	Ggc/Agc																																																																														
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	243	694	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64137779	64137779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	223	1013	2	ENST00000334205.4:c.1880A>G	p.Lys627Arg	p.K627R	ENST00000334205	NM_003942.2	627	aAa/aGa																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88672023	88672023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	62	527	0	ENST00000372037.3:c.557G>T	p.Arg186Ile	p.R186I	ENST00000372037	NM_004329.2	186	aGa/aTa																																																																														
ERCC3	0	MSKCC	GRCh37	2	128044465	128044465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	301	690	3	ENST00000285398.2:c.1156G>T	p.Asp386Tyr	p.D386Y	ENST00000285398	NM_000122.1	386	Gac/Tac																																																																														
MLH1	0	MSKCC	GRCh37	3	37050374	37050374	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	35	474	0	ENST00000231790.2:c.526del	p.Ile176PhefsTer26	p.I176Ffs*26	ENST00000231790	NM_000249.3	175	Aaa/aa																																																																														
FBXW7	0	MSKCC	GRCh37	4	153271277	153271277	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs13146842		P-0021652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	60	267	0	ENST00000281708.4:c.502-1G>A		p.X168_splice	ENST00000281708	NM_033632.3	168																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67589156	67589156	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021652-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	210	289	0	ENST00000274335.5:c.1147delA	p.Ile383TyrfsTer14	p.I383Yfs*14	ENST00000274335		382	Aaa/aa																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0021579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	136	776	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																																																														
BRAF	0	MSKCC	GRCh37	7	140481478	140481478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	167	1104	0	ENST00000288602.6:c.1330C>T	p.Arg444Trp	p.R444W	ENST00000288602	NM_004333.4	444	Cgg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	201	910	0	ENST00000269305.4:c.774A>T	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaT																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	251	433	0	ENST00000263967.3:c.1033A>C	p.Asn345His	p.N345H	ENST00000263967	NM_006218.2	345	Aat/Cat																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	325	479	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG																																																																														
FAM58A	0	MSKCC	GRCh37	X	152857996	152857996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	45	257	0	ENST00000406277.2:c.619G>A	p.Ala207Thr	p.A207T	ENST00000406277	NM_152274.4	207	Gcc/Acc																																																																														
FOXA1	0	MSKCC	GRCh37	14	38061211	38061240	+	inframe_deletion	In_Frame_Del	DEL	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	-			P-0021594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	447	621	0	ENST00000250448.2:c.749_778del	p.Ser250_Tyr259del	p.S250_Y259del	ENST00000250448	NM_004496.3	250	tCCGGCAACATGTTCGAGAACGGCTGCTACTtg/ttg																																																																														
NEGR1	0	MSKCC	GRCh37	1	72076782	72076782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	307	712	0	ENST00000357731.5:c.715C>T	p.Arg239Cys	p.R239C	ENST00000357731	NM_173808.2	239	Cgc/Tgc																																																																														
SETD2	0	MSKCC	GRCh37	3	47162171	47162171	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200956000		P-0021594-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	238	506	0	ENST00000409792.3:c.3955G>T	p.Val1319Leu	p.V1319L	ENST00000409792	NM_014159.6	1319	Gtg/Ttg																																																																														
PREX2	0	MSKCC	GRCh37	8	69046378	69046378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	77	800	0	ENST00000288368.4:c.3851C>T	p.Ala1284Val	p.A1284V	ENST00000288368	NM_024870.2	1284	gCg/gTg																																																																														
FYN	0	MSKCC	GRCh37	6	112025268	112025268	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	367	791	0	ENST00000368678.4:c.481C>T	p.Arg161Ter	p.R161*	ENST00000368678		161	Cga/Tga																																																																														
BCOR	0	MSKCC	GRCh37	X	39932556	39932557	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021538-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	472	592	0	ENST00000378444.4:c.2042dup	p.His682SerfsTer58	p.H682Sfs*58	ENST00000378444	NM_001123385.1	681	cct/ccCt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0021645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	328	838	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	63	380	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																																																														
PARK2	0	MSKCC	GRCh37	6	162864388	162864388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	186	688	1	ENST00000366898.1:c.125G>A	p.Arg42His	p.R42H	ENST00000366898	NM_004562.2	42	cGt/cAt																																																																														
APC	0	MSKCC	GRCh37	5	112173271	112173272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	34	292	0	ENST00000257430.4:c.1981dup	p.Cys661LeufsTer13	p.C661Lfs*13	ENST00000257430	NM_000038.5	660	-/T																																																																														
PTPRD	0	MSKCC	GRCh37	9	8465543	8465543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	114	754	2	ENST00000356435.5:c.3637G>A	p.Gly1213Arg	p.G1213R	ENST00000356435		1213	Gga/Aga																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	26	463	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	41	541	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	38	932	2	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																																																														
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	47	753	2	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																																																														
RAD21	0	MSKCC	GRCh37	8	117864309	117864309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	43	531	0	ENST00000297338.2:c.1348C>T	p.Arg450Cys	p.R450C	ENST00000297338	NM_006265.2	450	Cgc/Tgc																																																																														
JAK3	0	MSKCC	GRCh37	19	17943348	17943348	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148688786		P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	58	809	0	ENST00000458235.1:c.2660G>A	p.Arg887His	p.R887H	ENST00000458235	NM_000215.3	887	cGt/cAt																																																																														
MEF2B	0	MSKCC	GRCh37	19	19257169	19257169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	37	756	0	ENST00000162023.5:c.794C>T	p.Pro265Leu	p.P265L	ENST00000162023		265	cCg/cTg																																																																														
CUL3	0	MSKCC	GRCh37	2	225368388	225368388	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	41	687	0	ENST00000264414.4:c.1358del	p.Asn453ThrfsTer2	p.N453Tfs*2	ENST00000264414	NM_003590.4	453	aAc/ac																																																																														
FUBP1	0	MSKCC	GRCh37	1	78428478	78428478	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	34	663	0	ENST00000370768.2:c.1321C>T	p.Gln441Ter	p.Q441*	ENST00000370768	NM_003902.3	441	Caa/Taa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49443512	49443512	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	61	698	0	ENST00000301067.7:c.3859del	p.Glu1287ArgfsTer43	p.E1287Rfs*43	ENST00000301067	NM_003482.3	1287	Gag/ag																																																																														
SPEN	0	MSKCC	GRCh37	1	16199451	16199451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	22	412	1	ENST00000375759.3:c.224G>A	p.Arg75His	p.R75H	ENST00000375759	NM_015001.2	75	cGc/cAc																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692949	89692949	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	75	739	0	ENST00000371953.3:c.437del	p.Leu146Ter	p.L146*	ENST00000371953	NM_000314.4	145	Ttt/tt																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195733	102195733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	36	507	0	ENST00000263464.3:c.493G>A	p.Ala165Thr	p.A165T	ENST00000263464	NM_001165.4	165	Gca/Aca																																																																														
ERBB3	0	MSKCC	GRCh37	12	56478846	56478846	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201479792		P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	53	1008	0	ENST00000267101.3:c.302A>G	p.Asn101Ser	p.N101S	ENST00000267101	NM_001982.3	101	aAc/aGc																																																																														
GLI1	0	MSKCC	GRCh37	12	57861906	57861906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	40	679	1	ENST00000228682.2:c.1207C>A	p.Leu403Met	p.L403M	ENST00000228682	NM_005269.2	403	Ctg/Atg																																																																														
NTRK3	0	MSKCC	GRCh37	15	88576248	88576248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	36	592	0	ENST00000360948.2:c.1425G>T	p.Glu475Asp	p.E475D	ENST00000360948	NM_001012338.2	475	gaG/gaT																																																																														
GPS2	0	MSKCC	GRCh37	17	7216758	7216758	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	41	574	0	ENST00000380728.2:c.665T>C	p.Leu222Pro	p.L222P	ENST00000380728		222	cTa/cCa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10600020	10600020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	52	957	0	ENST00000171111.5:c.1556T>C	p.Ile519Thr	p.I519T	ENST00000171111	NM_203500.1	519	aTc/aCc																																																																														
POLD1	0	MSKCC	GRCh37	19	50918795	50918795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	60	975	0	ENST00000440232.2:c.2665C>T	p.Arg889Cys	p.R889C	ENST00000440232	NM_002691.3	889	Cgc/Tgc																																																																														
SOS1	0	MSKCC	GRCh37	2	39213366	39213366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	59	931	0	ENST00000402219.2:c.3601C>T	p.Arg1201Trp	p.R1201W	ENST00000402219	NM_005633.3	1201	Cgg/Tgg																																																																														
GNAS	0	MSKCC	GRCh37	20	57484477	57484477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	45	554	0	ENST00000371085.3:c.658C>T	p.His220Tyr	p.H220Y	ENST00000371085	NM_000516.4	220	Cac/Tac																																																																														
KDR	0	MSKCC	GRCh37	4	55981468	55981468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	41	639	0	ENST00000263923.4:c.469C>A	p.Leu157Ile	p.L157I	ENST00000263923	NM_002253.2	157	Ctc/Atc																																																																														
FAT1	0	MSKCC	GRCh37	4	187539320	187539320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	34	549	0	ENST00000441802.2:c.8420C>T	p.Pro2807Leu	p.P2807L	ENST00000441802	NM_005245.3	2807	cCg/cTg																																																																														
MSH3	0	MSKCC	GRCh37	5	79961132	79961132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	69	788	1	ENST00000265081.6:c.529G>A	p.Ala177Thr	p.A177T	ENST00000265081	NM_002439.4	177	Gca/Aca																																																																														
RAD50	0	MSKCC	GRCh37	5	131939072	131939072	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141989813		P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	64	628	0	ENST00000265335.6:c.2288G>A	p.Arg763His	p.R763H	ENST00000265335		763	cGc/cAc																																																																														
FGFR4	0	MSKCC	GRCh37	5	176524649	176524650	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	52	875	0	ENST00000292408.4:c.2385dup	p.Phe796LeufsTer18	p.F796Lfs*18	ENST00000292408	NM_213647.1	794	ttc/ttCc																																																																														
CARD11	0	MSKCC	GRCh37	7	2976766	2976766	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	73	1100	2	ENST00000396946.4:c.1246G>A	p.Glu416Lys	p.E416K	ENST00000396946	NM_032415.4	416	Gag/Aag																																																																														
RECQL4	0	MSKCC	GRCh37	8	145737786	145737786	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	44	899	0	ENST00000428558.2:c.3044A>G	p.Glu1015Gly	p.E1015G	ENST00000428558	NM_004260.3	1015	gAg/gGg																																																																														
PTCH1	0	MSKCC	GRCh37	9	98232134	98232134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199523893		P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	47	525	1	ENST00000331920.6:c.1808G>A	p.Arg603His	p.R603H	ENST00000331920	NM_000264.3	603	cGc/cAc																																																																														
BCOR	0	MSKCC	GRCh37	X	39932084	39932084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	47	415	0	ENST00000378444.4:c.2515A>G	p.Lys839Glu	p.K839E	ENST00000378444	NM_001123385.1	839	Aag/Gag																																																																														
KDM6A	0	MSKCC	GRCh37	X	44913140	44913140	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	41	465	0	ENST00000377967.4:c.815A>T	p.Tyr272Phe	p.Y272F	ENST00000377967	NM_021140.2	272	tAt/tTt																																																																														
AR	0	MSKCC	GRCh37	X	66937356	66937356	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	61	386	0	ENST00000374690.3:c.2210T>C	p.Val737Ala	p.V737A	ENST00000374690	NM_000044.3	737	gTc/gCc																																																																														
MED12	0	MSKCC	GRCh37	X	70347844	70347844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021600-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	56	425	0	ENST00000374080.3:c.3083A>G	p.Asn1028Ser	p.N1028S	ENST00000374080		1028	aAc/aGc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	168	636	0				ENST00000310581	NM_198253.2																																																																																
BRCA2	0	MSKCC	GRCh37	13	32906553	32906553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	63	417	0	ENST00000380152.3:c.938C>G	p.Ser313Cys	p.S313C	ENST00000380152		313	tCt/tGt																																																																														
AKT2	0	MSKCC	GRCh37	19	40739825	40739825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021590-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	301	937	2	ENST00000392038.2:c.1400G>A	p.Arg467Gln	p.R467Q	ENST00000392038	NM_001626.4	467	cGg/cAg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0021632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	248	986	5	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
GSK3B	0	MSKCC	GRCh37	3	119631632	119631632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	12	591	1	ENST00000316626.5:c.634C>T	p.Pro212Ser	p.P212S	ENST00000316626		212	Ccc/Tcc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245381	153245381	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021632-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	107	962	0	ENST00000281708.4:c.1810A>G	p.Lys604Glu	p.K604E	ENST00000281708	NM_033632.3	604	Aaa/Gaa																																																																														
CDK12	0	MSKCC	GRCh37	17	37627744	37627744	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	109	1263	0	ENST00000447079.4:c.1661del	p.Leu554CysfsTer56	p.L554Cfs*56	ENST00000447079	NM_015083.1	553	ccT/cc																																																																														
FOXA1	3169	MSKCC	GRCh37	14	38061221	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTTCTCGAACAT	GTTCTCGAACAT	-			P-0021620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	61	895	0	ENST00000250448.2:c.757_768del	p.Met253_Asn256del	p.M253_N256del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAAC/-																																																																														
MLH1	0	MSKCC	GRCh37	3	37055943	37055943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	60	666	0	ENST00000231790.2:c.698G>A	p.Cys233Tyr	p.C233Y	ENST00000231790	NM_000249.3	233	tGt/tAt																																																																														
CDK12	0	MSKCC	GRCh37	17	37627446	37627452	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAATC	AAAAATC	-			P-0021620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	89	971	0	ENST00000447079.4:c.1361_1367del	p.Glu454ValfsTer8	p.E454Vfs*8	ENST00000447079	NM_015083.1	454	gAAAAATCt/gt																																																																														
KLF4	0	MSKCC	GRCh37	9	110250264	110250265	+	stop_gained	Nonsense_Mutation	DNP	CG	CG	TC			P-0021620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	49	998	0	ENST00000374672.4:c.410_411delinsGA	p.Ser137Ter	p.S137*	ENST00000374672	NM_004235.4	137	tCG/tGA																																																																														
GATA3	0	MSKCC	GRCh37	10	8115965	8115974	+	frameshift_variant	Frame_Shift_Del	DEL	CATGGTCACC	CATGGTCACC	-			P-0021543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	54	455	0	ENST00000346208.3:c.1311_1320del	p.Ser437ArgfsTer35	p.S437Rfs*35	ENST00000346208		437	agCATGGTCACC/ag																																																																														
MEN1	0	MSKCC	GRCh37	11	64575085	64575085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	161	779	0	ENST00000337652.1:c.737G>A	p.Cys246Tyr	p.C246Y	ENST00000337652	NM_130803.2	246	tGt/tAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0021619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	77	852	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
ASXL1	0	MSKCC	GRCh37	20	31024989	31024989	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	47	625	0	ENST00000375687.4:c.4474A>T	p.Met1492Leu	p.M1492L	ENST00000375687	NM_015338.5	1492	Atg/Ttg																																																																														
DROSHA	0	MSKCC	GRCh37	5	31409160	31409161	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0021619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	30	610	0	ENST00000344624.3:c.3854+2dup		p.X1285_splice	ENST00000344624		1285																																																																															
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0021531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	110	555	2	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0021531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	754	582	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0021531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	255	844	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	195	412	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	95	349	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56491626	56491626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	175	493	0	ENST00000267101.3:c.2518G>A	p.Val840Met	p.V840M	ENST00000267101	NM_001982.3	840	Gtg/Atg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	122	836	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																																																														
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	126	522	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	176	687	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																																																														
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	168	559	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	122	542	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	530	937	4	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																																																														
NSD1	0	MSKCC	GRCh37	5	176636973	176636973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	212	857	0	ENST00000439151.2:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000439151	NM_022455.4	525	Cgg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16255883	16255883	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	85	599	2	ENST00000375759.3:c.3154delA	p.Ile1052SerfsTer40	p.I1052Sfs*40	ENST00000375759	NM_015001.2	1050	Aaa/aa																																																																														
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	103	567	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																																																														
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	200	788	12	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	11	894	0	ENST00000263967.3:c.1634A>C	p.Glu545Ala	p.E545A	ENST00000263967	NM_006218.2	545	gAg/gCg																																																																														
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	147	551	0	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	162	564	0	ENST00000237289.4:c.1368delG	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																																																														
ARID1A	8289	MSKCC	GRCh37	1	27088681	27088682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	326	1113	1	ENST00000324856.7:c.2296dup	p.Gln766ProfsTer51	p.Q766Pfs*51	ENST00000324856	NM_006015.4	764	tcc/tCcc																																																																														
PTPRT	11122	MSKCC	GRCh37	20	41306553	41306553	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	202	826	0	ENST00000373198.4:c.1106del	p.Gly369ValfsTer28	p.G369Vfs*28	ENST00000373198	NM_133170.3	369	gGt/gt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426022	49426022	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	242	950	0	ENST00000301067.7:c.12466delC	p.Gln4156AsnfsTer5	p.Q4156Nfs*5	ENST00000301067	NM_003482.3	4156	Caa/aa																																																																														
MTOR	0	MSKCC	GRCh37	1	11172914	11172914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	201	789	0	ENST00000361445.4:c.7361C>T	p.Ser2454Leu	p.S2454L	ENST00000361445	NM_004958.3	2454	tCa/tTa																																																																														
TCF7L2	0	MSKCC	GRCh37	10	114903718	114903718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	333	1040	3	ENST00000543371.1:c.722C>T	p.Pro241Leu	p.P241L	ENST00000543371	NM_001198531.1	241	cCg/cTg																																																																														
ARID2	0	MSKCC	GRCh37	12	46125088	46125088	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	88	308	0	ENST00000334344.6:c.275A>T	p.Tyr92Phe	p.Y92F	ENST00000334344	NM_152641.2	92	tAt/tTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49434931	49434931	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	203	815	0	ENST00000301067.7:c.6622C>T	p.Gln2208Ter	p.Q2208*	ENST00000301067	NM_003482.3	2208	Cag/Tag																																																																														
SH2B3	0	MSKCC	GRCh37	12	111885900	111885900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	273	982	0	ENST00000341259.2:c.1522C>T	p.Arg508Trp	p.R508W	ENST00000341259	NM_005475.2	508	Cgg/Tgg																																																																														
PTPN11	0	MSKCC	GRCh37	12	112919947	112919947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	157	468	2	ENST00000351677.2:c.1162G>A	p.Val388Ile	p.V388I	ENST00000351677	NM_002834.3	388	Gtc/Atc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347683	89347683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	219	847	0	ENST00000301030.4:c.5267G>A	p.Cys1756Tyr	p.C1756Y	ENST00000301030	NM_001256183.1	1756	tGc/tAc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11145659	11145661	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	274	949	2	ENST00000344626.4:c.4023_4025del	p.Asp1341del	p.D1341del	ENST00000344626	NM_003072.3	1341	GAC/-																																																																														
ASXL2	0	MSKCC	GRCh37	2	26029177	26029177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	208	644	1	ENST00000435504.4:c.173C>T	p.Ala58Val	p.A58V	ENST00000435504		58	gCa/gTa																																																																														
FAT1	0	MSKCC	GRCh37	4	187557804	187557804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	204	646	0	ENST00000441802.2:c.3907G>A	p.Glu1303Lys	p.E1303K	ENST00000441802	NM_005245.3	1303	Gaa/Aaa																																																																														
ETV1	0	MSKCC	GRCh37	7	13935534	13935534	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	125	481	0	ENST00000405192.2:c.1322del	p.Gly441AlafsTer52	p.G441Afs*52	ENST00000405192	NM_001163147.1	441	gGc/gc																																																																														
SOX17	0	MSKCC	GRCh37	8	55372287	55372288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	28	622	2	ENST00000297316.4:c.983dup	p.Gly331ArgfsTer34	p.G331Rfs*34	ENST00000297316	NM_022454.3	326	cac/caCc																																																																														
RECQL4	0	MSKCC	GRCh37	8	145742543	145742543	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	256	994	1	ENST00000428558.2:c.245T>A	p.Leu82Gln	p.L82Q	ENST00000428558	NM_004260.3	82	cTg/cAg																																																																														
KDM6A	0	MSKCC	GRCh37	X	44950000	44950000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	202	752	0	ENST00000377967.4:c.3769G>A	p.Glu1257Lys	p.E1257K	ENST00000377967	NM_021140.2	1257	Gaa/Aaa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	159	794	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
STK11	0	MSKCC	GRCh37	19	1219413	1219413	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	95	663	0	ENST00000326873.7:c.464+1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																																																															
RET	0	MSKCC	GRCh37	10	43613917	43613917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	97	744	0	ENST00000355710.3:c.2381G>T	p.Cys794Phe	p.C794F	ENST00000355710	NM_020975.4	794	tGc/tTc																																																																														
CREBBP	0	MSKCC	GRCh37	16	3781902	3781903	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	100	830	1	ENST00000262367.5:c.4764_4765delinsTT	p.Lys1588_Asn1589delinsAsnTyr	p.K1588_N1589delinsNY	ENST00000262367	NM_004380.2	1588	aaGAac/aaTTac																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805628	46805628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	127	808	1	ENST00000290295.7:c.328C>A	p.Pro110Thr	p.P110T	ENST00000290295	NM_006361.5	110	Ccc/Acc																																																																														
MAP2K2	0	MSKCC	GRCh37	19	4117625	4117625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	93	662	1	ENST00000262948.5:c.95C>T	p.Ala32Val	p.A32V	ENST00000262948	NM_030662.3	32	gCa/gTa																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602926	10602926	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	131	793	0	ENST00000171111.5:c.652G>C	p.Glu218Gln	p.E218Q	ENST00000171111	NM_203500.1	218	Gag/Cag																																																																														
CCNE1	0	MSKCC	GRCh37	19	30312916	30312916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	99	675	0	ENST00000262643.3:c.719G>T	p.Arg240Leu	p.R240L	ENST00000262643	NM_001238.2	240	cGt/cTt																																																																														
FAT1	0	MSKCC	GRCh37	4	187629234	187629234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	131	775	0	ENST00000441802.2:c.1748G>T	p.Gly583Val	p.G583V	ENST00000441802	NM_005245.3	583	gGc/gTc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31486597	31486597	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	123	640	0	ENST00000344624.3:c.1914+1G>T		p.X638_splice	ENST00000344624		638																																																																															
APC	0	MSKCC	GRCh37	5	112179562	112179563	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	66	492	0	ENST00000257430.4:c.8271_8272delinsTT	p.Glu2758Ter	p.E2758*	ENST00000257430	NM_000038.5	2757	gtGGaa/gtTTaa																																																																														
RBM10	0	MSKCC	GRCh37	X	47044957	47044957	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021535-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	126	446	0	ENST00000329236.7:c.2049T>G	p.Cys683Trp	p.C683W	ENST00000329236	NM_001204466.1	683	tgT/tgG																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	443	758	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	301	946	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0021591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	146	624	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0021591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	146	624	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	163	826	3	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																																																														
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0021591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	146	624	1	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	155	719	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652056	36652056	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	113	883	2	ENST00000244741.5:c.178G>T	p.Glu60Ter	p.E60*	ENST00000244741	NM_000389.4	60	Gag/Tag																																																																														
PRKD1	0	MSKCC	GRCh37	14	30135392	30135392	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	96	462	0	ENST00000331968.5:c.426T>G	p.Phe142Leu	p.F142L	ENST00000331968	NM_002742.2	142	ttT/ttG																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348318	89348318	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	225	1062	0	ENST00000301030.4:c.4632C>A	p.Asp1544Glu	p.D1544E	ENST00000301030	NM_001256183.1	1544	gaC/gaA																																																																														
PREX2	0	MSKCC	GRCh37	8	68950406	68950406	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	77	545	0	ENST00000288368.4:c.718A>T	p.Thr240Ser	p.T240S	ENST00000288368	NM_024870.2	240	Act/Tct																																																																														
SDHB	0	MSKCC	GRCh37	1	17380450	17380493	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGCTCCGCCAAGGGTTGTGGCCGGCAACCGGCGCCTCAAGGA	CAGGCTCCGCCAAGGGTTGTGGCCGGCAACCGGCGCCTCAAGGA	T			P-0021573-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	55	722	0	ENST00000375499.3:c.22_65delinsA	p.Ser8ThrfsTer55	p.S8Tfs*55	ENST00000375499	NM_003000.2	8	TCCTTGAGGCGCCGGTTGCCGGCCACAACCCTTGGCGGAGCCTGc/Ac																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0021663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	155	636	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7979530	7979530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	221	762	3	ENST00000319144.4:c.1495C>T	p.Arg499Cys	p.R499C	ENST00000319144	NM_001139.2	499	Cgc/Tgc																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100137	27100137	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	214	725	0	ENST00000324856.7:c.3934del	p.Ser1312ProfsTer169	p.S1312Pfs*169	ENST00000324856	NM_006015.4	1311	ccT/cc																																																																														
PTPRD	0	MSKCC	GRCh37	9	8521415	8521415	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	261	875	0	ENST00000356435.5:c.823G>T	p.Asp275Tyr	p.D275Y	ENST00000356435		275	Gat/Tat																																																																														
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	175	681	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																																																														
NKX2-1	0	MSKCC	GRCh37	14	36986753	36986754	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	40	168	1	ENST00000354822.5:c.935dup	p.Gln313ThrfsTer126	p.Q313Tfs*126	ENST00000354822	NM_001079668.2	312	cta/ctTa																																																																														
RAD51C	0	MSKCC	GRCh37	17	56811531	56811531	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021539-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	139	648	0	ENST00000337432.4:c.1079A>C	p.Glu360Ala	p.E360A	ENST00000337432	NM_058216.2	360	gAa/gCa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	157	701	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	53	658	0				ENST00000310581	NM_198253.2																																																																																
EIF1AX	0	MSKCC	GRCh37	X	20159755	20159755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	80	300	0	ENST00000379607.5:c.4C>G	p.Pro2Ala	p.P2A	ENST00000379607	NM_001412.3	2	Ccc/Gcc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0021548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	468	864	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																																																														
MDC1	0	MSKCC	GRCh37	6	30673154	30673154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	153	629	0	ENST00000376406.3:c.3806C>T	p.Thr1269Ile	p.T1269I	ENST00000376406	NM_014641.2	1269	aCt/aTt																																																																														
ATRX	0	MSKCC	GRCh37	X	76855002	76855002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	218	863	0	ENST00000373344.5:c.5834G>T	p.Gly1945Val	p.G1945V	ENST00000373344	NM_000489.3	1945	gGa/gTa																																																																														
ATM	0	MSKCC	GRCh37	11	108202220	108202220	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	434	572	0	ENST00000278616.4:c.7565A>C	p.Gln2522Pro	p.Q2522P	ENST00000278616	NM_000051.3	2522	cAa/cCa																																																																														
MSH2	0	MSKCC	GRCh37	2	47707970	47707970	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	432	578	0	ENST00000233146.2:c.2594T>G	p.Ile865Ser	p.I865S	ENST00000233146	NM_000251.2	865	aTc/aGc																																																																														
SF3B1	0	MSKCC	GRCh37	2	198274655	198274655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1169	266	556	0	ENST00000335508.6:c.743C>T	p.Thr248Ile	p.T248I	ENST00000335508	NM_012433.2	248	aCc/aTc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	36	645	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	64	819	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0021583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	14	379	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0021592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	116	442	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																																																														
RRAS2	22800	MSKCC	GRCh37	11	14380338	14380339	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCCCACGCC			P-0021592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	342	474	1	ENST00000256196.4:c.70_78dup	p.Gly24_Gly26dup	p.G24_G26dup	ENST00000256196		24	-/GGCGTGGGC																																																																														
ARID1A	0	MSKCC	GRCh37	1	27101002	27101002	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	268	817	0	ENST00000324856.7:c.4284C>G	p.Tyr1428Ter	p.Y1428*	ENST00000324856	NM_006015.4	1428	taC/taG																																																																														
ARID1A	0	MSKCC	GRCh37	1	27106607	27106607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	484	722	0	ENST00000324856.7:c.6218T>C	p.Leu2073Pro	p.L2073P	ENST00000324856	NM_006015.4	2073	cTa/cCa																																																																														
DOT1L	0	MSKCC	GRCh37	19	2206768	2206770	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0021592-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	197	710	1	ENST00000398665.3:c.829_831del	p.Phe277del	p.F277del	ENST00000398665	NM_032482.2	276	aaCTTc/aac																																																																														
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	58	626	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	77	585	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	36	363	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	173	961	0	ENST00000269305.4:c.395A>T	p.Lys132Met	p.K132M	ENST00000269305	NM_001126112.2	132	aAg/aTg																																																																														
HOXB13	0	MSKCC	GRCh37	17	46805584	46805584	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	120	852	0	ENST00000290295.7:c.372del	p.Thr125LeufsTer154	p.T125Lfs*154	ENST00000290295	NM_006361.5	124	ccC/cc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604725	48604726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	47	544	0	ENST00000342988.3:c.1549_1550del	p.Ser517HisfsTer9	p.S517Hfs*9	ENST00000342988	NM_005359.5	516	cAG/c																																																																														
RICTOR	0	MSKCC	GRCh37	5	38960080	38960080	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021630-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	72	267	0	ENST00000357387.3:c.1852G>A	p.Asp618Asn	p.D618N	ENST00000357387	NM_152756.3	618	Gat/Aat																																																																														
SPOP	0	MSKCC	GRCh37	17	47696688	47696688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	155	828	0	ENST00000347630.2:c.260A>G	p.Tyr87Cys	p.Y87C	ENST00000347630	NM_001007230.1	87	tAc/tGc																																																																														
GATA2	0	MSKCC	GRCh37	3	128200663	128200663	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0021542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	179	839	0	ENST00000341105.2:c.1142A>G	p.Asn381Ser	p.N381S	ENST00000341105	NM_032638.4	381	aAt/aGt																																																																														
APC	0	MSKCC	GRCh37	5	112102907	112102908	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0021542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	138	492	0	ENST00000257430.4:c.242_243del	p.Asn81IlefsTer57	p.N81Ifs*57	ENST00000257430	NM_000038.5	81	aAT/a																																																																														
KMT2C	0	MSKCC	GRCh37	7	151864231	151864232	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	TG			P-0021542-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	89	493	0	ENST00000262189.6:c.9748_9749dup	p.Gln3250HisfsTer13	p.Q3250Hfs*13	ENST00000262189	NM_170606.2	3250	cag/caCAg																																																																														
KIT	0	MSKCC	GRCh37	4	55593601	55593615	+	inframe_deletion	In_Frame_Del	DEL	AGTGGAAGGTTGTTG	AGTGGAAGGTTGTTG	-			P-0021667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	272	527	0	ENST00000288135.5:c.1669_1683del	p.Trp557_Glu561del	p.W557_E561del	ENST00000288135	NM_000222.2	556	cAGTGGAAGGTTGTTGag/cag																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	64	250	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	64	250	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	64	250	0	ENST00000304494.5:c.322G>C	p.Asp108His	p.D108H	ENST00000304494	NM_000077.4	108	Gat/Cat																																																																														
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	53	696	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45656829	45656829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	43	600	0	ENST00000407780.3:c.327G>C	p.Gln109His	p.Q109H	ENST00000407780	NM_001283052.1	109	caG/caC																																																																														
NF1	0	MSKCC	GRCh37	17	29654605	29654605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	30	282	0	ENST00000358273.4:c.5357C>T	p.Ser1786Leu	p.S1786L	ENST00000358273	NM_001042492.2	1786	tCg/tTg																																																																														
RET	0	MSKCC	GRCh37	10	43595988	43595988	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	51	657	0	ENST00000355710.3:c.155A>G	p.Tyr52Cys	p.Y52C	ENST00000355710	NM_020975.4	52	tAc/tGc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49427282	49427282	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	29	430	0	ENST00000301067.7:c.11206C>T	p.Gln3736Ter	p.Q3736*	ENST00000301067	NM_003482.3	3736	Cag/Tag																																																																														
GRIN2A	0	MSKCC	GRCh37	16	10274055	10274055	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	21	659	0	ENST00000330684.3:c.214C>G	p.Leu72Val	p.L72V	ENST00000330684	NM_001134407.1	72	Ctg/Gtg																																																																														
SPEN	0	MSKCC	GRCh37	1	16256416	16256416	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	105	732	0	ENST00000375759.3:c.3681G>C	p.Lys1227Asn	p.K1227N	ENST00000375759	NM_015001.2	1227	aaG/aaC																																																																														
MPL	0	MSKCC	GRCh37	1	43817949	43817949	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	217	771	0	ENST00000372470.3:c.1628T>G	p.Leu543Arg	p.L543R	ENST00000372470	NM_005373.2	543	cTt/cGt																																																																														
POLE	0	MSKCC	GRCh37	12	133256151	133256151	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	97	748	0	ENST00000320574.5:c.510C>G	p.Ile170Met	p.I170M	ENST00000320574	NM_006231.2	170	atC/atG																																																																														
RB1	0	MSKCC	GRCh37	13	49030410	49030410	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	219	713	0	ENST00000267163.4:c.1885G>T	p.Glu629Ter	p.E629*	ENST00000267163	NM_000321.2	629	Gag/Tag																																																																														
MGA	0	MSKCC	GRCh37	15	42021371	42021371	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	181	480	1	ENST00000219905.7:c.3667G>T	p.Glu1223Ter	p.E1223*	ENST00000219905	NM_001164273.1	1223	Gag/Tag																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993791	72993791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	258	702	1	ENST00000268489.5:c.254C>T	p.Ser85Leu	p.S85L	ENST00000268489	NM_006885.3	85	tCg/tTg																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	335	834	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11138623	11138623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	199	674	0	ENST00000344626.4:c.3379G>T	p.Asp1127Tyr	p.D1127Y	ENST00000344626	NM_003072.3	1127	Gat/Tat																																																																														
ERCC2	0	MSKCC	GRCh37	19	45868168	45868168	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	528	946	2	ENST00000391945.4:c.522C>G	p.Ile174Met	p.I174M	ENST00000391945	NM_000400.3	174	atC/atG																																																																														
IRS1	0	MSKCC	GRCh37	2	227663157	227663157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	319	763	1	ENST00000305123.5:c.298G>A	p.Glu100Lys	p.E100K	ENST00000305123	NM_005544.2	100	Gag/Aag																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42848536	42848536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	112	653	0	ENST00000398585.3:c.806C>A	p.Ser269Tyr	p.S269Y	ENST00000398585	NM_001135099.1	269	tCt/tAt																																																																														
PPP4R2	0	MSKCC	GRCh37	3	73114547	73114547	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	104	358	0	ENST00000356692.5:c.929-1G>A		p.X310_splice	ENST00000356692		310																																																																															
KDR	0	MSKCC	GRCh37	4	55962486	55962486	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	100	637	0	ENST00000263923.4:c.2638C>G	p.Arg880Gly	p.R880G	ENST00000263923	NM_002253.2	880	Cga/Gga																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	610	716	0				ENST00000310581	NM_198253.2																																																																																
DROSHA	0	MSKCC	GRCh37	5	31526849	31526849	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1521	162	1138	0	ENST00000344624.3:c.191C>G	p.Ser64Ter	p.S64*	ENST00000344624		64	tCa/tGa																																																																														
ETV1	0	MSKCC	GRCh37	7	13935528	13935528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	161	515	0	ENST00000405192.2:c.1328G>A	p.Cys443Tyr	p.C443Y	ENST00000405192	NM_001163147.1	443	tGc/tAc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151896463	151896463	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	310	632	0	ENST00000262189.6:c.4174C>T	p.Gln1392Ter	p.Q1392*	ENST00000262189	NM_170606.2	1392	Cag/Tag																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373151	118373151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	157	486	0	ENST00000534358.1:c.6544G>A	p.Gly2182Ser	p.G2182S	ENST00000534358	NM_005933.3	2182	Ggt/Agt																																																																														
TBX3	0	MSKCC	GRCh37	12	115109764	115109764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1040	282	941	0	ENST00000257566.3:c.2114C>T	p.Ser705Phe	p.S705F	ENST00000257566	NM_016569.3	705	tCc/tTc																																																																														
TCF3	0	MSKCC	GRCh37	19	1646408	1646408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	195	724	0	ENST00000344749.5:c.91A>G	p.Thr31Ala	p.T31A	ENST00000344749	NM_001136139.2	31	Acc/Gcc																																																																														
FAT1	0	MSKCC	GRCh37	4	187542480	187542480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	171	568	0	ENST00000441802.2:c.5260C>T	p.His1754Tyr	p.H1754Y	ENST00000441802	NM_005245.3	1754	Cac/Tac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	311	745	1				ENST00000310581	NM_198253.2																																																																																
ASXL1	0	MSKCC	GRCh37	20	31023702	31023702	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	241	937	1	ENST00000375687.4:c.3187C>T	p.Gln1063Ter	p.Q1063*	ENST00000375687	NM_015338.5	1063	Cag/Tag																																																																														
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	188	993	1	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	246	830	0	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44922802	44922802	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	264	318	1	ENST00000377967.4:c.1663C>T	p.Gln555Ter	p.Q555*	ENST00000377967	NM_021140.2	555	Cag/Tag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350198	89350198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	115	1073	0	ENST00000301030.4:c.2752G>A	p.Glu918Lys	p.E918K	ENST00000301030	NM_001256183.1	918	Gag/Aag																																																																														
BARD1	0	MSKCC	GRCh37	2	215646021	215646021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	221	815	0	ENST00000260947.4:c.577G>C	p.Glu193Gln	p.E193Q	ENST00000260947	NM_000465.2	193	Gag/Cag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348883	89348883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	148	1169	0	ENST00000301030.4:c.4067C>T	p.Ser1356Leu	p.S1356L	ENST00000301030	NM_001256183.1	1356	tCa/tTa																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36651902	36651902	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	355	823	0	ENST00000244741.5:c.25del	p.Arg9ValfsTer22	p.R9Vfs*22	ENST00000244741	NM_000389.4	8	gtC/gt																																																																														
FOXL2	0	MSKCC	GRCh37	3	138665162	138665162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	80	833	0	ENST00000330315.3:c.403G>A	p.Glu135Lys	p.E135K	ENST00000330315	NM_023067.3	135	Gaa/Aaa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351512	89351512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	82	959	1	ENST00000301030.4:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000301030	NM_001256183.1	480	Gag/Aag																																																																														
MDM4	0	MSKCC	GRCh37	1	204518539	204518539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	91	489	1	ENST00000367182.3:c.1202C>T	p.Ser401Phe	p.S401F	ENST00000367182	NM_001278516.1	401	tCt/tTt																																																																														
MDM2	0	MSKCC	GRCh37	12	69222667	69222667	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	177	871	1	ENST00000462284.1:c.640G>C	p.Glu214Gln	p.E214Q	ENST00000462284	NM_002392.5	214	Gaa/Caa																																																																														
DICER1	0	MSKCC	GRCh37	14	95592997	95592997	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	145	867	0	ENST00000343455.3:c.823G>C	p.Glu275Gln	p.E275Q	ENST00000343455	NM_177438.2	275	Gaa/Caa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89347999	89347999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	150	1161	0	ENST00000301030.4:c.4951G>T	p.Asp1651Tyr	p.D1651Y	ENST00000301030	NM_001256183.1	1651	Gac/Tac																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89348726	89348726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	143	1186	0	ENST00000301030.4:c.4224G>A	p.Met1408Ile	p.M1408I	ENST00000301030	NM_001256183.1	1408	atG/atA																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349149	89349149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			792	203	1316	0	ENST00000301030.4:c.3801G>C	p.Glu1267Asp	p.E1267D	ENST00000301030	NM_001256183.1	1267	gaG/gaC																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89349727	89349727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	127	1201	0	ENST00000301030.4:c.3223G>C	p.Glu1075Gln	p.E1075Q	ENST00000301030	NM_001256183.1	1075	Gaa/Caa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350006	89350006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	115	1066	2	ENST00000301030.4:c.2944G>A	p.Glu982Lys	p.E982K	ENST00000301030	NM_001256183.1	982	Gag/Aag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350072	89350073	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	104	1044	1	ENST00000301030.4:c.2877_2878delinsAA	p.Glu960Lys	p.E960K	ENST00000301030	NM_001256183.1	959	aaGGag/aaAAag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350190	89350190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	114	1071	1	ENST00000301030.4:c.2760G>T	p.Arg920Ser	p.R920S	ENST00000301030	NM_001256183.1	920	agG/agT																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350537	89350537	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	138	903	2	ENST00000301030.4:c.2413G>T	p.Glu805Ter	p.E805*	ENST00000301030	NM_001256183.1	805	Gaa/Taa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350648	89350649	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AT			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	181	1516	3	ENST00000301030.4:c.2301_2302delinsAT	p.Lys768Ter	p.K768*	ENST00000301030	NM_001256183.1	767	aaGAaa/aaATaa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350791	89350791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	163	1353	1	ENST00000301030.4:c.2159G>A	p.Arg720Lys	p.R720K	ENST00000301030	NM_001256183.1	720	aGa/aAa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350800	89350800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	166	1338	0	ENST00000301030.4:c.2150C>T	p.Ser717Leu	p.S717L	ENST00000301030	NM_001256183.1	717	tCa/tTa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350909	89350909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	168	1206	1	ENST00000301030.4:c.2041G>A	p.Glu681Lys	p.E681K	ENST00000301030	NM_001256183.1	681	Gaa/Aaa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351104	89351104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	118	970	0	ENST00000301030.4:c.1846G>A	p.Glu616Lys	p.E616K	ENST00000301030	NM_001256183.1	616	Gag/Aag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351148	89351148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	86	878	2	ENST00000301030.4:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000301030	NM_001256183.1	601	cGa/cAa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351476	89351476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	60	860	0	ENST00000301030.4:c.1474G>A	p.Asp492Asn	p.D492N	ENST00000301030	NM_001256183.1	492	Gac/Aac																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351533	89351534	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	95	1020	0	ENST00000301030.4:c.1416_1417delinsAT	p.Ser473Cys	p.S473C	ENST00000301030	NM_001256183.1	472	cgGAgc/cgATgc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351920	89352942	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGACGGGGGCCGTGGCCTTCTGTGGCTCTGGGTTCTTGGCCTTGTGCTTGAGGCCTTTTTCGAACTCGGAGTCCGTGTTGTTGCCGTCGACTGAACTGGAAGGTGCGAAGGATGGTGCGTCTTCCTCTTCTGAGCTCTCTGTTGGAGGTAGGAAGCGAGAGGTCACAGGCAGGCTCAAAACAGCTCTCCCCAGAATGGCAGAGGAGGGAGGCTCTGCAGATGTGTCTGCGGGAAGGTTCCCACCCTGCCTCTGCAGAGACACTTTGCTCGACTCATGGAAACCAGCCACAGGCAGGAGGAAACCAGACAGAGCTCAGCTGACAGACAGGGCTGGCATCTTAGAATGAAGACTGCAGGCTTCTCGGCAGTGACACACCTGGGCGGGGTCTCCCGCAGTCCAGAAGCTCCTGTAAGCCCCCAGCATCCGAGGAGGAGCTGATCAGAGGGGCAACACTGTGCAAACACCACAGGGCAGCTCCTACCATCCCTGCATAAAAGAACAGGCAGCTCAGGTGGCCGTGACTTACCCGTCGAGCTCTCCTCGCTGGAAGTGTAAGTGCCTTTGCCTAACAGGAGGTTCACCATCGTGGGGGAGTTGGCCACTTTCAGCGGCGTCTCGCCTTTCCTGTTGCTCTGCTGCGGGTTCCCTCCGTACCGCAGCAGCAGCTTCACCACCTACAAGACAGTAACACCCGCGTCAGGGACTGCTGGAGAAGCACAACTCCTCTACCGTTCCGCATAACACGGCAGCCCCTTCCGAGAACCCTGGGGTTCGACCCGAGAGCAGCCCCTCACGGTCTGAGGGTGTGGGAGCCGAGCGCCCAGGGACTGCCTGGCGAGGCTCTGGGTGTGGTGGGCGAGGCTGTGGCTCCTCTGTGGGAAGGGCTGCAGCCGCGGGGGCTCCCGCACCCCTCCTGTGCTCTCCTTCAGAAGGGCTCTGCCTCCTTTGGATTTTTTTCCACCATTTCTCCGTTGCCGCAAGTAGACGACTTCCCAGGAATCTTCTCACGAAGGCTCTCCCCT	TGACGGGGGCCGTGGCCTTCTGTGGCTCTGGGTTCTTGGCCTTGTGCTTGAGGCCTTTTTCGAACTCGGAGTCCGTGTTGTTGCCGTCGACTGAACTGGAAGGTGCGAAGGATGGTGCGTCTTCCTCTTCTGAGCTCTCTGTTGGAGGTAGGAAGCGAGAGGTCACAGGCAGGCTCAAAACAGCTCTCCCCAGAATGGCAGAGGAGGGAGGCTCTGCAGATGTGTCTGCGGGAAGGTTCCCACCCTGCCTCTGCAGAGACACTTTGCTCGACTCATGGAAACCAGCCACAGGCAGGAGGAAACCAGACAGAGCTCAGCTGACAGACAGGGCTGGCATCTTAGAATGAAGACTGCAGGCTTCTCGGCAGTGACACACCTGGGCGGGGTCTCCCGCAGTCCAGAAGCTCCTGTAAGCCCCCAGCATCCGAGGAGGAGCTGATCAGAGGGGCAACACTGTGCAAACACCACAGGGCAGCTCCTACCATCCCTGCATAAAAGAACAGGCAGCTCAGGTGGCCGTGACTTACCCGTCGAGCTCTCCTCGCTGGAAGTGTAAGTGCCTTTGCCTAACAGGAGGTTCACCATCGTGGGGGAGTTGGCCACTTTCAGCGGCGTCTCGCCTTTCCTGTTGCTCTGCTGCGGGTTCCCTCCGTACCGCAGCAGCAGCTTCACCACCTACAAGACAGTAACACCCGCGTCAGGGACTGCTGGAGAAGCACAACTCCTCTACCGTTCCGCATAACACGGCAGCCCCTTCCGAGAACCCTGGGGTTCGACCCGAGAGCAGCCCCTCACGGTCTGAGGGTGTGGGAGCCGAGCGCCCAGGGACTGCCTGGCGAGGCTCTGGGTGTGGTGGGCGAGGCTGTGGCTCCTCTGTGGGAAGGGCTGCAGCCGCGGGGGCTCCCGCACCCCTCCTGTGCTCTCCTTCAGAAGGGCTCTGCCTCCTTTGGATTTTTTTCCACCATTTCTCCGTTGCCGCAAGTAGACGACTTCCCAGGAATCTTCTCACGAAGGCTCTCCCCT	-			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	95	1230	1	ENST00000301030.4:c.745-345_1033del		p.X249_splice	ENST00000301030	NM_001256183.1	249																																																																															
TP53	0	MSKCC	GRCh37	17	7573991	7573991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	98	1104	2	ENST00000269305.4:c.1036G>A	p.Glu346Lys	p.E346K	ENST00000269305	NM_001126112.2	346	Gag/Aag																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39623696	39623696	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	72	510	2	ENST00000262039.4:c.2104-1G>A		p.X702_splice	ENST00000262039	NM_002647.2	702																																																																															
CARM1	0	MSKCC	GRCh37	19	11030568	11030568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	78	922	0	ENST00000327064.4:c.1122C>G	p.Phe374Leu	p.F374L	ENST00000327064	NM_199141.1	374	ttC/ttG																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178095722	178095722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	153	698	0	ENST00000397062.3:c.1609G>C	p.Glu537Gln	p.E537Q	ENST00000397062	NM_006164.4	537	Gaa/Caa																																																																														
PPARG	0	MSKCC	GRCh37	3	12475573	12475573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2817	450	694	0	ENST00000287820.6:c.1447G>T	p.Val483Leu	p.V483L	ENST00000287820	NM_015869.4	483	Gtg/Ttg																																																																														
PPARG	0	MSKCC	GRCh37	3	12475599	12475599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	2920	693	1	ENST00000287820.6:c.1473G>A	p.Met491Ile	p.M491I	ENST00000287820	NM_015869.4	491	atG/atA																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713864	30713864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	120	849	1	ENST00000359013.4:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000359013	NM_001024847.2	422	Gac/Aac																																																																														
FLT4	0	MSKCC	GRCh37	5	180046343	180046343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	72	896	1	ENST00000261937.6:c.2671C>T	p.Arg891Cys	p.R891C	ENST00000261937	NM_182925.4	891	Cgc/Tgc																																																																														
NBN	0	MSKCC	GRCh37	8	90995015	90995015	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1063	122	832	0	ENST00000265433.3:c.106G>C	p.Glu36Gln	p.E36Q	ENST00000265433	NM_002485.4	36	Gaa/Caa																																																																														
XIAP	0	MSKCC	GRCh37	X	123019685	123019685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	108	451	0	ENST00000355640.3:c.173G>T	p.Gly58Val	p.G58V	ENST00000355640		58	gGa/gTa																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350072	89350072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	102	1043	0	ENST00000301030.4:c.2878G>A	p.Glu960Lys	p.E960K	ENST00000301030	NM_001256183.1	960	Gag/Aag																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89351533	89351533	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	94	1009	0	ENST00000301030.4:c.1417A>T	p.Ser473Cys	p.S473C	ENST00000301030	NM_001256183.1	473	Agc/Tgc																																																																														
ANKRD11	0	MSKCC	GRCh37	16	89350648	89350648	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	181	1519	0	ENST00000301030.4:c.2302A>T	p.Lys768Ter	p.K768*	ENST00000301030	NM_001256183.1	768	Aaa/Taa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023212	27023226	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGGGCCCTAGGCC	CGCGGGCCCTAGGCC	A			P-0021549-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	121	521	0	ENST00000324856.7:c.318_332delinsA	p.Asn106LysfsTer6	p.N106Kfs*6	ENST00000324856	NM_006015.4	106	aaCGCGGGCCCTAGGCCc/aaAc																																																																														
IDH2	0	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021672-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	171	839	0	ENST00000330062.3:c.515G>T	p.Arg172Met	p.R172M	ENST00000330062	NM_002168.2	172	aGg/aTg																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	192	408	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	224	601	1	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176050415	176050415	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	58	349	0	ENST00000367669.3:c.1150C>G	p.Arg384Gly	p.R384G	ENST00000367669	NM_022457.5	384	Cga/Gga																																																																														
ATM	0	MSKCC	GRCh37	11	108175540	108175540	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	93	559	0	ENST00000278616.4:c.5635C>G	p.Gln1879Glu	p.Q1879E	ENST00000278616	NM_000051.3	1879	Caa/Gaa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376372	118376372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	93	726	1	ENST00000534358.1:c.9765G>A	p.Met3255Ile	p.M3255I	ENST00000534358	NM_005933.3	3255	atG/atA																																																																														
MGA	0	MSKCC	GRCh37	15	42003111	42003111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	665	718	0	ENST00000219905.7:c.2648C>G	p.Ser883Cys	p.S883C	ENST00000219905	NM_001164273.1	883	tCt/tGt																																																																														
TP53	0	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0021064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	364	723	0	ENST00000269305.4:c.376-2A>C		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
CARM1	0	MSKCC	GRCh37	19	11024584	11024584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	80	653	2	ENST00000327064.4:c.701G>A	p.Arg234His	p.R234H	ENST00000327064	NM_199141.1	234	cGc/cAc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46607799	46607799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021064-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	465	748	0	ENST00000263734.3:c.1988G>A	p.Gly663Glu	p.G663E	ENST00000263734	NM_001430.4	663	gGa/gAa																																																																														
TP53	0	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	89	1149	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																																																														
PTEN	0	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0021498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	51	703	0	ENST00000371953.3:c.635-1G>C		p.X212_splice	ENST00000371953	NM_000314.4	212																																																																															
FGF3	0	MSKCC	GRCh37	11	69631183	69631183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021498-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	41	937	0	ENST00000334134.2:c.229G>A	p.Glu77Lys	p.E77K	ENST00000334134	NM_005247.2	77	Gag/Aag																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0021429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	98	757	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca																																																																														
KDM5C	0	MSKCC	GRCh37	X	53223422	53223422	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	166	982	1	ENST00000375401.3:c.3937C>T	p.Gln1313Ter	p.Q1313*	ENST00000375401	NM_004187.3	1313	Caa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	250	811	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	111	807	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21970895	21970899	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCTCA	CCTCA	-			P-0021500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	110	917	0	ENST00000304494.5:c.457+2_457+6del		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970895	21970899	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCTCA	CCTCA	-			P-0021500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	110	917	0	ENST00000304494.5:c.457+2_457+6del		p.X153_splice	ENST00000304494	NM_000077.4	153																																																																															
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	337	695	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426483	49426483	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	152	984	0	ENST00000301067.7:c.12005del	p.Pro4002GlnfsTer20	p.P4002Qfs*20	ENST00000301067	NM_003482.3	4002	cCa/ca																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72830631	72830631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	368	769	1	ENST00000268489.5:c.5950G>A	p.Glu1984Lys	p.E1984K	ENST00000268489	NM_006885.3	1984	Gag/Aag																																																																														
BRCA1	0	MSKCC	GRCh37	17	41234523	41234523	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	318	609	1	ENST00000357654.3:c.4255G>T	p.Glu1419Ter	p.E1419*	ENST00000357654	NM_007294.3	1419	Gaa/Taa																																																																														
ALK	0	MSKCC	GRCh37	2	29917776	29917940	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTCCTCGGAGGGGATGCGGCGCCAGGACCAGCTCTGGTTCCTGAGGTCATGCAGTGGAGGGGAATACTCCAGCTCACAGGGGAAGTCAAAGCTGCACTCCAGACCTGCAATAATAGCCAAGGGTCAATGGAAAAAACCATTTCCCAAACGTGACTTTTCAGCCC	CCTCCTCGGAGGGGATGCGGCGCCAGGACCAGCTCTGGTTCCTGAGGTCATGCAGTGGAGGGGAATACTCCAGCTCACAGGGGAAGTCAAAGCTGCACTCCAGACCTGCAATAATAGCCAAGGGTCAATGGAAAAAACCATTTCCCAAACGTGACTTTTCAGCCC	-			P-0021471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	143	725	0	ENST00000389048.3:c.788-60_892del		p.X263_splice	ENST00000389048	NM_004304.4	263																																																																															
TOP1	0	MSKCC	GRCh37	20	39725156	39725889	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTCTTGTTAAAAATGCAATTTCTGTATAGGATTCAGTAGGTCTAGGAGGGGGCCTGGGATTCTGCATTTCTAAACTCCCACATGATGCCAATGCTGCTGGTCTGTGAACCACTTGTTGAATAGCAAAGTTCTAGAAGAAGGTCTTATTAGGCTTTTCATATGGGAAATCTGGGCTTGCCTAGTATGGATATATATTTTTTTATTCATATTCCACCCACCTAACTTTGAAGAAGAAAGATGCCTATTTCTTTTCCCCACAATTCCTTTCTTCCACTCCCTGCCCTATCCCTTCCTCCCCTTCTTGAACAGAGGCTGCTTAGCTTAGCAGTGGCAGGAGTCCCTCTGAGGATTTGATTTTTAAAAACCATTGAAGAGGTGTAAAGGACCCTGCTTGCTGAAAGGAAAAGGAAGAGTGACTGGGCCTCCCCCAGGTCATCCCTGTCCTGAGCAGGCACCTGGGAACAATTAACTGGCATAGTCTCCAGAGAATGACCCAGGTAAATATATGCTAAAGAGAAGGAGAATTTGTACAAGTAGATATAAATCAGTATGTTGTCTTTGTTGTTGTTGCTACTATGTGTCACCAGACCTTTATATACCATGAGAAGGCAAACCATTATTAAAGAGAATTCGCTAGCCCTGGGTATTTATGCTTAGAACATGAATACTATACCTCACTTTTTGGAACCACTTTTTTCTCTAGGTAAAGTCATGAAGCTGAGCCCCAAAGCAG	AGTCTTGTTAAAAATGCAATTTCTGTATAGGATTCAGTAGGTCTAGGAGGGGGCCTGGGATTCTGCATTTCTAAACTCCCACATGATGCCAATGCTGCTGGTCTGTGAACCACTTGTTGAATAGCAAAGTTCTAGAAGAAGGTCTTATTAGGCTTTTCATATGGGAAATCTGGGCTTGCCTAGTATGGATATATATTTTTTTATTCATATTCCACCCACCTAACTTTGAAGAAGAAAGATGCCTATTTCTTTTCCCCACAATTCCTTTCTTCCACTCCCTGCCCTATCCCTTCCTCCCCTTCTTGAACAGAGGCTGCTTAGCTTAGCAGTGGCAGGAGTCCCTCTGAGGATTTGATTTTTAAAAACCATTGAAGAGGTGTAAAGGACCCTGCTTGCTGAAAGGAAAAGGAAGAGTGACTGGGCCTCCCCCAGGTCATCCCTGTCCTGAGCAGGCACCTGGGAACAATTAACTGGCATAGTCTCCAGAGAATGACCCAGGTAAATATATGCTAAAGAGAAGGAGAATTTGTACAAGTAGATATAAATCAGTATGTTGTCTTTGTTGTTGTTGCTACTATGTGTCACCAGACCTTTATATACCATGAGAAGGCAAACCATTATTAAAGAGAATTCGCTAGCCCTGGGTATTTATGCTTAGAACATGAATACTATACCTCACTTTTTGGAACCACTTTTTTCTCTAGGTAAAGTCATGAAGCTGAGCCCCAAAGCAG	-			P-0021471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	113	0	0	ENST00000361337.2:c.731-702_762del		p.X244_splice	ENST00000361337	NM_003286.2	244																																																																															
KMT2C	0	MSKCC	GRCh37	7	151864364	151864364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	240	562	0	ENST00000262189.6:c.9617G>A	p.Arg3206Lys	p.R3206K	ENST00000262189	NM_170606.2	3206	aGa/aAa																																																																														
PTPRD	0	MSKCC	GRCh37	9	8485807	8485807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	43	380	2	ENST00000356435.5:c.3010C>A	p.Pro1004Thr	p.P1004T	ENST00000356435		1004	Cca/Aca																																																																														
B2M	0	MSKCC	GRCh37	15	45007672	45007672	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	23	552	0	ENST00000558401.1:c.119C>G	p.Ser40Ter	p.S40*	ENST00000558401	NM_004048.2	40	tCa/tGa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27058093	27058093	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	115	519	0	ENST00000324856.7:c.1801C>T	p.Gln601Ter	p.Q601*	ENST00000324856	NM_006015.4	601	Cag/Tag																																																																														
PTCH1	0	MSKCC	GRCh37	9	98211389	98211389	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150850039		P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	48	927	0	ENST00000331920.6:c.3766G>A	p.Val1256Met	p.V1256M	ENST00000331920	NM_000264.3	1256	Gtg/Atg																																																																														
TERT	0	MSKCC	GRCh37	5	1293718	1293718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	72	938	0	ENST00000310581.5:c.1283G>T	p.Arg428Leu	p.R428L	ENST00000310581	NM_198253.2	428	cGg/cTg																																																																														
AURKA	0	MSKCC	GRCh37	20	54958197	54958197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	85	704	0	ENST00000312783.6:c.410G>T	p.Arg137Leu	p.R137L	ENST00000312783	NM_198436.1	137	cGc/cTc																																																																														
NTRK1	0	MSKCC	GRCh37	1	156849141	156849141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	317	934	0	ENST00000524377.1:c.2033C>A	p.Thr678Asn	p.T678N	ENST00000524377	NM_002529.3	678	aCc/aAc																																																																														
FH	0	MSKCC	GRCh37	1	241665777	241665777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	27	586	0	ENST00000366560.3:c.1202G>T	p.Gly401Val	p.G401V	ENST00000366560	NM_000143.3	401	gGa/gTa																																																																														
SESN3	0	MSKCC	GRCh37	11	94924741	94924741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	72	839	0	ENST00000536441.1:c.169G>A	p.Glu57Lys	p.E57K	ENST00000536441	NM_144665.3	57	Gaa/Aaa																																																																														
BIRC3	0	MSKCC	GRCh37	11	102201867	102201867	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	84	498	0	ENST00000263464.3:c.1219G>T	p.Gly407Ter	p.G407*	ENST00000263464	NM_001165.4	407	Gga/Tga																																																																														
KMT2A	0	MSKCC	GRCh37	11	118362012	118362012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	47	528	0	ENST00000534358.1:c.4798G>A	p.Glu1600Lys	p.E1600K	ENST00000534358	NM_005933.3	1600	Gag/Aag																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50482303	50482303	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	72	617	0	ENST00000394963.4:c.655-1G>T		p.X219_splice	ENST00000394963	NM_003076.4	219																																																																															
MDM2	0	MSKCC	GRCh37	12	69233288	69233288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	15	409	0	ENST00000462284.1:c.1153G>A	p.Asp385Asn	p.D385N	ENST00000462284	NM_002392.5	385	Gat/Aat																																																																														
IGF1	0	MSKCC	GRCh37	12	102813355	102813355	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	69	664	1	ENST00000307046.8:c.334C>A	p.Leu112Ile	p.L112I	ENST00000307046	NM_001111285.1	112	Ctc/Atc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32913836	32913836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	26	602	0	ENST00000380152.3:c.5344C>G	p.Gln1782Glu	p.Q1782E	ENST00000380152		1782	Caa/Gaa																																																																														
BLM	0	MSKCC	GRCh37	15	91304252	91304252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	19	592	1	ENST00000355112.3:c.1649C>T	p.Ser550Phe	p.S550F	ENST00000355112	NM_000057.2	550	tCc/tTc																																																																														
CTCF	0	MSKCC	GRCh37	16	67645327	67645327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	40	561	0	ENST00000264010.4:c.592C>G	p.Gln198Glu	p.Q198E	ENST00000264010	NM_006565.3	198	Cag/Gag																																																																														
TP53	0	MSKCC	GRCh37	17	7578395	7578396	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGT			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	91	792	0	ENST00000269305.4:c.488_534dup	p.His179ThrfsTer7	p.H179Tfs*7	ENST00000269305	NM_001126112.2	178	-/ACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCAC																																																																														
ALOX12B	0	MSKCC	GRCh37	17	7977017	7977017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	43	810	0	ENST00000319144.4:c.1713C>G	p.Ile571Met	p.I571M	ENST00000319144	NM_001139.2	571	atC/atG																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602593	10602593	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	156	762	1	ENST00000171111.5:c.985T>A	p.Tyr329Asn	p.Y329N	ENST00000171111	NM_203500.1	329	Tac/Aac																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11135059	11135059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	138	961	3	ENST00000344626.4:c.3026G>T	p.Arg1009Leu	p.R1009L	ENST00000344626	NM_003072.3	1009	cGc/cTc																																																																														
EPCAM	0	MSKCC	GRCh37	2	47606119	47606119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	18	706	0	ENST00000263735.4:c.583C>G	p.Leu195Val	p.L195V	ENST00000263735	NM_002354.2	195	Ctg/Gtg																																																																														
MSH6	0	MSKCC	GRCh37	2	48018193	48018193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	43	865	0	ENST00000234420.5:c.388C>T	p.His130Tyr	p.H130Y	ENST00000234420	NM_000179.2	130	Cat/Tat																																																																														
ERBB4	0	MSKCC	GRCh37	2	212251872	212251872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	17	318	0	ENST00000342788.4:c.3187C>A	p.Gln1063Lys	p.Q1063K	ENST00000342788	NM_005235.2	1063	Cag/Aag																																																																														
ERBB4	0	MSKCC	GRCh37	2	212530064	212530064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	34	343	0	ENST00000342788.4:c.1855C>T	p.Pro619Ser	p.P619S	ENST00000342788	NM_005235.2	619	Cca/Tca																																																																														
CUL3	0	MSKCC	GRCh37	2	225449042	225449664	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGAGTTTGTAAAGTGCTTAGGAAGCTTGTAGGATGAAAGACGCTATAAATACACCCAATGTTACTAGTTTATGACCACGGAGCATTCCGTGGAACCACTGTCACTGCGTCGGGGGCAGGTTGATGGCATAGACCTTCCTGGGGAGGGGGGCAGAGAGAGAGGGCAGCCCCTTCATCACCCTAAAAGCTAGGCTGGGTAAATTTTCAAAGTGTAGCGAAACCCCACGTGAAAAGTTCCACACACGCCCCACACAGGGAGGACTCCGCGGCTGCTAGCAGCGCCGGAGACTGGGCCTACAACCCCGGCAACGTGGGGAGGCGTGGGGCGGCCGAGGGGCCCCGGCCGCAGCCGACGCCCGCGGAGCGGCTGAAGGAGCAGCTCCCGGACGGGGGCGCGGCGCCAGGCCCGGGCTCCCGGCGCGGGGAACGGCCCGGGAGGGCGGCCGCGCCGGGGCCCCGCGCCGCCCGGTTGCCGGGAAGGCTCGCGCCCCGCGGCCGGCGGGCGTGGGGGAGGGGAGGCCGGGCCTGCGGCCTGTTGGGGGACTTCAGCCCGGGCCTCGCGTGCGGCTCTCGGCCCGGCCCCCGGCCCCGGGGTCCCGGACGCCGAGGAGAGACTCACCGGA	AAGAGTTTGTAAAGTGCTTAGGAAGCTTGTAGGATGAAAGACGCTATAAATACACCCAATGTTACTAGTTTATGACCACGGAGCATTCCGTGGAACCACTGTCACTGCGTCGGGGGCAGGTTGATGGCATAGACCTTCCTGGGGAGGGGGGCAGAGAGAGAGGGCAGCCCCTTCATCACCCTAAAAGCTAGGCTGGGTAAATTTTCAAAGTGTAGCGAAACCCCACGTGAAAAGTTCCACACACGCCCCACACAGGGAGGACTCCGCGGCTGCTAGCAGCGCCGGAGACTGGGCCTACAACCCCGGCAACGTGGGGAGGCGTGGGGCGGCCGAGGGGCCCCGGCCGCAGCCGACGCCCGCGGAGCGGCTGAAGGAGCAGCTCCCGGACGGGGGCGCGGCGCCAGGCCCGGGCTCCCGGCGCGGGGAACGGCCCGGGAGGGCGGCCGCGCCGGGGCCCCGCGCCGCCCGGTTGCCGGGAAGGCTCGCGCCCCGCGGCCGGCGGGCGTGGGGGAGGGGAGGCCGGGCCTGCGGCCTGTTGGGGGACTTCAGCCCGGGCCTCGCGTGCGGCTCTCGGCCCGGCCCCCGGCCCCGGGGTCCCGGACGCCGAGGAGAGACTCACCGGA	-			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			0	51	0	0	ENST00000264414.4:c.63_66+619del		p.X21_splice	ENST00000264414	NM_003590.4	21																																																																															
IRS1	0	MSKCC	GRCh37	2	227663402	227663402	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	55	500	0	ENST00000305123.5:c.53A>G	p.Tyr18Cys	p.Y18C	ENST00000305123	NM_005544.2	18	tAc/tGc																																																																														
PTPRT	0	MSKCC	GRCh37	20	40790021	40790021	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	42	665	0	ENST00000373198.4:c.2710C>A	p.Gln904Lys	p.Q904K	ENST00000373198	NM_133170.3	904	Cag/Aag																																																																														
U2AF1	0	MSKCC	GRCh37	21	44513271	44513271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	119	863	0	ENST00000291552.4:c.664G>T	p.Gly222Cys	p.G222C	ENST00000291552	NM_006758.2	222	Ggc/Tgc																																																																														
PPARG	0	MSKCC	GRCh37	3	12475584	12475584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	42	621	0	ENST00000287820.6:c.1458G>C	p.Lys486Asn	p.K486N	ENST00000287820	NM_015869.4	486	aaG/aaC																																																																														
EPHA3	0	MSKCC	GRCh37	3	89259574	89259574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	22	530	0	ENST00000336596.2:c.718C>A	p.Pro240Thr	p.P240T	ENST00000336596	NM_005233.5	240	Cca/Aca																																																																														
ATR	0	MSKCC	GRCh37	3	142274802	142274802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	81	691	0	ENST00000350721.4:c.2258G>C	p.Cys753Ser	p.C753S	ENST00000350721	NM_001184.3	753	tGt/tCt																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55141100	55141100	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	74	613	0	ENST00000257290.5:c.1746T>A	p.Tyr582Ter	p.Y582*	ENST00000257290	NM_006206.4	582	taT/taA																																																																														
EPHA5	0	MSKCC	GRCh37	4	66201809	66201809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	37	702	0	ENST00000273854.3:c.2693C>A	p.Pro898Gln	p.P898Q	ENST00000273854	NM_004439.5	898	cCa/cAa																																																																														
SDHA	0	MSKCC	GRCh37	5	226015	226015	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	11	166	0	ENST00000264932.6:c.474G>T	p.Met158Ile	p.M158I	ENST00000264932	NM_004168.2	158	atG/atT																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56178562	56178562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	13	359	0	ENST00000399503.3:c.3535G>C	p.Glu1179Gln	p.E1179Q	ENST00000399503	NM_005921.1	1179	Gag/Cag																																																																														
RASA1	0	MSKCC	GRCh37	5	86564327	86564327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	47	471	1	ENST00000274376.6:c.59G>T	p.Gly20Val	p.G20V	ENST00000274376	NM_002890.2	20	gGa/gTa																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839790	27839790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	55	722	0	ENST00000328488.2:c.304G>T	p.Val102Leu	p.V102L	ENST00000328488	NM_003533.2	102	Gtg/Ttg																																																																														
STK19	0	MSKCC	GRCh37	6	31940142	31940142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	44	1019	0	ENST00000375331.2:c.284C>G	p.Ser95Cys	p.S95C	ENST00000375331	NM_004197.1	95	tCt/tGt																																																																														
EPHA7	0	MSKCC	GRCh37	6	93979213	93979213	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	46	521	0	ENST00000369303.4:c.1615A>C	p.Thr539Pro	p.T539P	ENST00000369303	NM_004440.3	539	Aca/Cca																																																																														
EPHA7	0	MSKCC	GRCh37	6	93982063	93982063	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	55	616	0	ENST00000369303.4:c.1402C>A	p.His468Asn	p.H468N	ENST00000369303	NM_004440.3	468	Cat/Aat																																																																														
ROS1	0	MSKCC	GRCh37	6	117631283	117631283	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	29	702	0	ENST00000368508.3:c.6395G>C	p.Ser2132Thr	p.S2132T	ENST00000368508	NM_002944.2	2132	aGt/aCt																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137525479	137525479	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	18	682	0	ENST00000367739.4:c.536A>G	p.Asn179Ser	p.N179S	ENST00000367739	NM_000416.2	179	aAc/aGc																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138201347	138201347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	40	623	0	ENST00000237289.4:c.2046G>C	p.Gln682His	p.Q682H	ENST00000237289	NM_001270507.1	682	caG/caC																																																																														
CARD11	0	MSKCC	GRCh37	7	2959221	2959221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	186	826	0	ENST00000396946.4:c.2295G>C	p.Met765Ile	p.M765I	ENST00000396946	NM_032415.4	765	atG/atC																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106520027	106520027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	48	481	0	ENST00000359195.3:c.2455G>T	p.Asp819Tyr	p.D819Y	ENST00000359195	NM_002649.2	819	Gat/Tat																																																																														
KMT2C	0	MSKCC	GRCh37	7	151859797	151859797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	52	486	1	ENST00000262189.6:c.10865C>T	p.Pro3622Leu	p.P3622L	ENST00000262189	NM_170606.2	3622	cCa/cTa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151884356	151884356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	22	326	0	ENST00000262189.6:c.4999G>C	p.Glu1667Gln	p.E1667Q	ENST00000262189	NM_170606.2	1667	Gaa/Caa																																																																														
KMT2C	0	MSKCC	GRCh37	7	152007129	152007129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	42	628	0	ENST00000262189.6:c.771G>T	p.Glu257Asp	p.E257D	ENST00000262189	NM_170606.2	257	gaG/gaT																																																																														
PREX2	0	MSKCC	GRCh37	8	69058461	69058461	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	29	658	1	ENST00000288368.4:c.4105C>T	p.Gln1369Ter	p.Q1369*	ENST00000288368	NM_024870.2	1369	Caa/Taa																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971145	21971145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	69	493	0	ENST00000304494.5:c.213C>G	p.Asn71Lys	p.N71K	ENST00000304494	NM_000077.4	71	aaC/aaG																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971145	21971145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	69	493	0	ENST00000304494.5:c.213C>G	p.Asn71Lys	p.N71K	ENST00000304494	NM_000077.4	71	aaC/aaG																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971145	21971145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	69	493	0	ENST00000304494.5:c.213C>G	p.Asn71Lys	p.N71K	ENST00000304494	NM_000077.4	71	aaC/aaG																																																																														
MAPKAP1	0	MSKCC	GRCh37	9	128268662	128268663	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	101	842	0	ENST00000265960.3:c.992_993del	p.Pro331GlnfsTer5	p.P331Qfs*5	ENST00000265960	NM_001006617.1	331	cCC/c																																																																														
TRAF2	0	MSKCC	GRCh37	9	139815632	139815632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	42	795	0	ENST00000247668.2:c.1103C>T	p.Ala368Val	p.A368V	ENST00000247668	NM_021138.3	368	gCt/gTt																																																																														
RBM10	0	MSKCC	GRCh37	X	47044883	47044883	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	150	499	1	ENST00000329236.7:c.1975G>T	p.Asp659Tyr	p.D659Y	ENST00000329236	NM_001204466.1	659	Gac/Tac																																																																														
AR	0	MSKCC	GRCh37	X	66765742	66765742	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	169	622	1	ENST00000374690.3:c.754G>T	p.Glu252Ter	p.E252*	ENST00000374690	NM_000044.3	252	Gag/Tag																																																																														
SMAD4	0	MSKCC	GRCh37	18	48593443	48593443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021387-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	114	597	0	ENST00000342988.3:c.1194G>T	p.Trp398Cys	p.W398C	ENST00000342988	NM_005359.5	398	tgG/tgT																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031970	26031970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	71	549	0	ENST00000244661.2:c.319G>A	p.Asp107Asn	p.D107N	ENST00000244661	NM_003537.3	107	Gac/Aac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	422	823	0				ENST00000310581	NM_198253.2																																																																																
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	942	1025	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																																																														
ATM	0	MSKCC	GRCh37	11	108216545	108216545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	115	841	0	ENST00000278616.4:c.8494C>T	p.Arg2832Cys	p.R2832C	ENST00000278616	NM_000051.3	2832	Cgt/Tgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27059264	27059264	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	190	807	0	ENST00000324856.7:c.1901C>G	p.Ser634Ter	p.S634*	ENST00000324856	NM_006015.4	634	tCa/tGa																																																																														
SF3B1	0	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	131	846	1	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170112	32170112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	251	1025	3	ENST00000375023.3:c.3496C>T	p.Pro1166Ser	p.P1166S	ENST00000375023	NM_004557.3	1166	Cca/Tca																																																																														
HIST1H3D	0	MSKCC	GRCh37	6	26197129	26197129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	191	821	0	ENST00000356476.2:c.350G>C	p.Arg117Pro	p.R117P	ENST00000356476		117	cGa/cCa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27059273	27059273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	180	784	0	ENST00000324856.7:c.1910C>T	p.Ser637Phe	p.S637F	ENST00000324856	NM_006015.4	637	tCc/tTc																																																																														
NEGR1	0	MSKCC	GRCh37	1	72058649	72058649	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	129	566	0	ENST00000357731.5:c.791T>A	p.Leu264His	p.L264H	ENST00000357731	NM_173808.2	264	cTc/cAc																																																																														
RFWD2	0	MSKCC	GRCh37	1	176175987	176175987	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2065	176	551	3	ENST00000367669.3:c.128C>A	p.Ser43Ter	p.S43*	ENST00000367669	NM_022457.5	43	tCg/tAg																																																																														
PARP1	0	MSKCC	GRCh37	1	226549185	226549185	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	80	692	0	ENST00000366794.5:c.3021C>G	p.Phe1007Leu	p.F1007L	ENST00000366794	NM_001618.3	1007	ttC/ttG																																																																														
PGR	0	MSKCC	GRCh37	11	100999307	100999307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	749	1077	3	ENST00000325455.5:c.495G>A	p.Met165Ile	p.M165I	ENST00000325455	NM_001202474.3	165	atG/atA																																																																														
SETD8	0	MSKCC	GRCh37	12	123889486	123889486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	85	317	2	ENST00000330479.4:c.713G>A	p.Arg238Gln	p.R238Q	ENST00000330479	NM_020382.3	238	cGg/cAg																																																																														
DIS3	0	MSKCC	GRCh37	13	73352435	73352435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	172	1069	0	ENST00000377767.4:c.470A>G	p.Asn157Ser	p.N157S	ENST00000377767	NM_014953.3	157	aAt/aGt																																																																														
TP53BP1	0	MSKCC	GRCh37	15	43784275	43784275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	171	1088	0	ENST00000382044.4:c.211G>A	p.Glu71Lys	p.E71K	ENST00000382044	NM_001141980.1	71	Gaa/Aaa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37868273	37868273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	413	828	1	ENST00000269571.5:c.994G>C	p.Glu332Gln	p.E332Q	ENST00000269571		332	Gag/Cag																																																																														
JAK3	0	MSKCC	GRCh37	19	17953253	17953253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2709	195	1051	0	ENST00000458235.1:c.733C>A	p.Leu245Met	p.L245M	ENST00000458235	NM_000215.3	245	Ctg/Atg																																																																														
ERF	0	MSKCC	GRCh37	19	42753717	42753717	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	287	1100	0	ENST00000222329.4:c.547C>G	p.Arg183Gly	p.R183G	ENST00000222329	NM_006494.2	183	Cga/Gga																																																																														
CHEK2	0	MSKCC	GRCh37	22	29091771	29091771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	668	709	0	ENST00000328354.6:c.1186C>G	p.Leu396Val	p.L396V	ENST00000328354	NM_007194.3	396	Ctt/Gtt																																																																														
DROSHA	0	MSKCC	GRCh37	5	31401631	31401631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	648	865	1	ENST00000344624.3:c.4033G>A	p.Glu1345Lys	p.E1345K	ENST00000344624		1345	Gaa/Aaa																																																																														
HIST1H3I	0	MSKCC	GRCh37	6	27839802	27839802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	347	843	1	ENST00000328488.2:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000328488	NM_003533.2	98	Gag/Cag																																																																														
LATS1	0	MSKCC	GRCh37	6	150004810	150004810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	252	750	0	ENST00000253339.5:c.1415G>C	p.Arg472Thr	p.R472T	ENST00000253339		472	aGa/aCa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157502230	157502230	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	443	796	0	ENST00000346085.5:c.3263C>A	p.Ser1088Ter	p.S1088*	ENST00000346085	NM_020732.3	1088	tCa/tAa																																																																														
PARK2	0	MSKCC	GRCh37	6	161990410	161990410	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	131	788	0	ENST00000366898.1:c.910T>G	p.Phe304Val	p.F304V	ENST00000366898	NM_004562.2	304	Ttc/Gtc																																																																														
PIK3CG	0	MSKCC	GRCh37	7	106509966	106509966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021503-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	189	932	1	ENST00000359195.3:c.1960G>A	p.Asp654Asn	p.D654N	ENST00000359195	NM_002649.2	654	Gat/Aat																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	36	628	2				ENST00000310581	NM_198253.2																																																																																
CASP8	0	MSKCC	GRCh37	2	202131505	202131505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	29	590	0	ENST00000358485.4:c.473C>T	p.Ser158Phe	p.S158F	ENST00000358485	NM_001080125.1	158	tCt/tTt																																																																														
NTRK1	0	MSKCC	GRCh37	1	156843614	156843614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	78	1030	1	ENST00000524377.1:c.1040G>A	p.Arg347His	p.R347H	ENST00000524377	NM_002529.3	347	cGc/cAc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30686299	30686299	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	99	703	0	ENST00000359013.4:c.230A>C	p.Lys77Thr	p.K77T	ENST00000359013	NM_001024847.2	77	aAa/aCa																																																																														
MTOR	0	MSKCC	GRCh37	1	11307897	11307897	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	55	828	0	ENST00000361445.4:c.1095G>C	p.Leu365Phe	p.L365F	ENST00000361445	NM_004958.3	365	ttG/ttC																																																																														
SPEN	0	MSKCC	GRCh37	1	16258339	16258339	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	45	780	0	ENST00000375759.3:c.5604G>C	p.Leu1868Phe	p.L1868F	ENST00000375759	NM_015001.2	1868	ttG/ttC																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426318	49426318	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0021311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	67	1202	0	ENST00000301067.7:c.12170C>G	p.Ser4057Ter	p.S4057*	ENST00000301067	NM_003482.3	4057	tCa/tGa																																																																														
PALB2	0	MSKCC	GRCh37	16	23647397	23647397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	53	883	2	ENST00000261584.4:c.470C>T	p.Ser157Leu	p.S157L	ENST00000261584	NM_024675.3	157	tCa/tTa																																																																														
STAT3	0	MSKCC	GRCh37	17	40475623	40475623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	52	732	0	ENST00000264657.5:c.1621G>C	p.Gly541Arg	p.G541R	ENST00000264657	NM_139276.2	541	Ggg/Cgg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306611	41306611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	38	967	0	ENST00000373198.4:c.1048del	p.Leu350TrpfsTer47	p.L350Wfs*47	ENST00000373198	NM_133170.3	350	Ctg/tg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391023	89391023	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	41	833	0	ENST00000336596.2:c.1089T>G	p.Cys363Trp	p.C363W	ENST00000336596	NM_005233.5	363	tgT/tgG																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67522538	67522538	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs142940225		P-0021311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	22	302	0	ENST00000274335.5:c.35A>G	p.Tyr12Cys	p.Y12C	ENST00000274335		12	tAt/tGt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	232	594	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	282	763	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ATM	0	MSKCC	GRCh37	11	108141875	108141875	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0021319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	207	444	0	ENST00000278616.4:c.2921+2T>G		p.X974_splice	ENST00000278616	NM_000051.3	974																																																																															
INPP4A	0	MSKCC	GRCh37	2	99193519	99193519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	280	817	0	ENST00000074304.5:c.2714C>G	p.Ser905Trp	p.S905W	ENST00000074304	NM_001134224.1	905	tCg/tGg																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056332	26056333	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	207	520	0	ENST00000343677.2:c.324dup	p.Lys109GlnfsTer13	p.K109Qfs*13	ENST00000343677	NM_005319.3	108	-/C																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021508-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	15	412	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	24	1040	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	133	868	0	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																																																														
IGF2	0	MSKCC	GRCh37	11	2154242	2154242	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	64	1061	0	ENST00000434045.2:c.686delC	p.Pro229GlnfsTer27	p.P229Qfs*27	ENST00000434045	NM_001127598.1	229	cCa/ca																																																																														
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	881	1147	2	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																																																														
ATM	0	MSKCC	GRCh37	11	108196902	108196902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	106	702	0	ENST00000278616.4:c.6925C>G	p.Leu2309Val	p.L2309V	ENST00000278616	NM_000051.3	2309	Ctg/Gtg																																																																														
ATM	0	MSKCC	GRCh37	11	108216540	108216540	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	59	772	0	ENST00000278616.4:c.8489T>G	p.Val2830Gly	p.V2830G	ENST00000278616	NM_000051.3	2830	gTt/gGt																																																																														
ARID2	0	MSKCC	GRCh37	12	46245349	46245350	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	107	792	0	ENST00000334344.6:c.3444dup	p.Gln1149ThrfsTer11	p.Q1149Tfs*11	ENST00000334344	NM_152641.2	1148	tta/ttAa																																																																														
SLX4	0	MSKCC	GRCh37	16	3640010	3640010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	166	1220	0	ENST00000294008.3:c.3629G>T	p.Ser1210Ile	p.S1210I	ENST00000294008	NM_032444.2	1210	aGc/aTc																																																																														
INPP4A	0	MSKCC	GRCh37	2	99179935	99179935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	79	1076	1	ENST00000074304.5:c.1878G>C	p.Trp626Cys	p.W626C	ENST00000074304	NM_001134224.1	626	tgG/tgC																																																																														
SOX2	0	MSKCC	GRCh37	3	181430956	181430956	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	220	1027	1	ENST00000325404.1:c.808C>A	p.Leu270Ile	p.L270I	ENST00000325404	NM_003106.3	270	Ctc/Atc																																																																														
TERT	0	MSKCC	GRCh37	5	1279473	1279473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	69	1172	4	ENST00000310581.5:c.2063G>T	p.Arg688Met	p.R688M	ENST00000310581	NM_198253.2	688	aGg/aTg																																																																														
HGF	0	MSKCC	GRCh37	7	81372669	81372669	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	54	514	0	ENST00000222390.5:c.865G>T	p.Ala289Ser	p.A289S	ENST00000222390	NM_000601.4	289	Gct/Tct																																																																														
PDCD1LG2	0	MSKCC	GRCh37	9	5549364	5549364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	127	801	1	ENST00000397747.3:c.391C>A	p.Leu131Ile	p.L131I	ENST00000397747	NM_025239.3	131	Cta/Ata																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	281	721	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
PTPN11	0	MSKCC	GRCh37	12	112915524	112915524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021422-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	123	749	0	ENST00000351677.2:c.923A>G	p.Asn308Ser	p.N308S	ENST00000351677	NM_002834.3	308	aAt/aGt																																																																														
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	255	866	3	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																																																														
TP53	0	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	210	658	3	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
PTPRT	0	MSKCC	GRCh37	20	40770570	40770570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	57	787	0	ENST00000373198.4:c.2812G>T	p.Gly938Trp	p.G938W	ENST00000373198	NM_133170.3	938	Ggg/Tgg																																																																														
WHSC1	0	MSKCC	GRCh37	4	1980614	1980614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	159	553	3	ENST00000382891.5:c.4076G>A	p.Arg1359Gln	p.R1359Q	ENST00000382891	NM_133335.3	1359	cGg/cAg																																																																														
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	152	614	4	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																																																														
APC	0	MSKCC	GRCh37	5	112175282	112175282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	123	394	0	ENST00000257430.4:c.3991A>T	p.Arg1331Ter	p.R1331*	ENST00000257430	NM_000038.5	1331	Aga/Tga																																																																														
CARD11	0	MSKCC	GRCh37	7	2968317	2968317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	203	829	3	ENST00000396946.4:c.1669C>T	p.Arg557Cys	p.R557C	ENST00000396946	NM_032415.4	557	Cgc/Tgc																																																																														
AR	0	MSKCC	GRCh37	X	66765263	66765263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	135	619	10	ENST00000374690.3:c.275G>A	p.Gly92Asp	p.G92D	ENST00000374690	NM_000044.3	92	gGt/gAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	56	608	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160653	56160654	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	178	468	0	ENST00000399503.3:c.930dup	p.Val311SerfsTer15	p.V311Sfs*15	ENST00000399503	NM_005921.1	309	-/A																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56184186	56184186	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0021431-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	177	345	0	ENST00000399503.3:c.4389+2T>A		p.X1463_splice	ENST00000399503	NM_005921.1	1463																																																																															
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	77	554	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																																																														
APC	0	MSKCC	GRCh37	5	112173947	112173947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	56	513	1	ENST00000257430.4:c.2656C>T	p.Gln886Ter	p.Q886*	ENST00000257430	NM_000038.5	886	Cag/Tag																																																																														
SOX9	0	MSKCC	GRCh37	17	70120181	70120182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CG			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	97	642	0	ENST00000245479.2:c.1185_1186dup	p.His396ArgfsTer8	p.H396Rfs*8	ENST00000245479	NM_000346.3	395	acg/aCGcg																																																																														
SOX9	0	MSKCC	GRCh37	17	70117962	70117963	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	52	383	0	ENST00000245479.2:c.431+1dup		p.R144fs	ENST00000245479	NM_000346.3	144	aga/aGga																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	65	773	1	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178922363	178922363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	9	670	0	ENST00000263967.3:c.1132T>C	p.Cys378Arg	p.C378R	ENST00000263967	NM_006218.2	378	Tgt/Cgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48581348	48581348	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	61	662	0	ENST00000342988.3:c.653del	p.Pro218LeufsTer23	p.P218Lfs*23	ENST00000342988	NM_005359.5	218	Cct/ct																																																																														
KIT	0	MSKCC	GRCh37	4	55573285	55573285	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	33	586	0	ENST00000288135.5:c.947T>C	p.Phe316Ser	p.F316S	ENST00000288135	NM_000222.2	316	tTc/tCc																																																																														
APC	0	MSKCC	GRCh37	5	112175778	112175779	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	41	458	0	ENST00000257430.4:c.4488_4489del	p.Pro1497ArgfsTer16	p.P1497Rfs*16	ENST00000257430	NM_000038.5	1496	aCT/a																																																																														
KMT2C	0	MSKCC	GRCh37	7	152027813	152027813	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	71	687	2	ENST00000262189.6:c.262C>T	p.Gln88Ter	p.Q88*	ENST00000262189	NM_170606.2	88	Caa/Taa																																																																														
FANCC	0	MSKCC	GRCh37	9	97912366	97912366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021427-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	40	464	0	ENST00000289081.3:c.525G>A	p.Met175Ile	p.M175I	ENST00000289081	NM_000136.2	175	atG/atA																																																																														
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	104	272	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																																																														
BRCA2	0	MSKCC	GRCh37	13	32931894	32931894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	131	524	0	ENST00000380152.3:c.7633G>A	p.Val2545Ile	p.V2545I	ENST00000380152		2545	Gtt/Att																																																																														
ARID5B	0	MSKCC	GRCh37	10	63662128	63662128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	129	582	0	ENST00000279873.7:c.232C>T	p.Leu78Phe	p.L78F	ENST00000279873	NM_032199.2	78	Ctc/Ttc																																																																														
IRS2	0	MSKCC	GRCh37	13	110435253	110435253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	200	500	2	ENST00000375856.3:c.3148G>A	p.Val1050Ile	p.V1050I	ENST00000375856	NM_003749.2	1050	Gtt/Att																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858033	9858033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	123	710	0	ENST00000330684.3:c.3368A>G	p.Glu1123Gly	p.E1123G	ENST00000330684	NM_001134407.1	1123	gAg/gGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578378	7578392	+	inframe_deletion	In_Frame_Del	DEL	ATCTGAGCAGCGCTC	ATCTGAGCAGCGCTC	-			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	306	564	2	ENST00000269305.4:c.538_552delGAGCGCTGCTCAGAT	p.Glu180_Asp184del	p.E180_D184del	ENST00000269305	NM_001126112.2	180	GAGCGCTGCTCAGAT/-																																																																														
CIC	0	MSKCC	GRCh37	19	42795607	42795607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021418-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	215	821	0	ENST00000575354.2:c.2687C>A	p.Pro896Gln	p.P896Q	ENST00000575354	NM_015125.3	896	cCa/cAa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	1159	1081	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15983722	15983722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	445	723	0	ENST00000268712.3:c.3400G>A	p.Gly1134Ser	p.G1134S	ENST00000268712	NM_006311.3	1134	Ggt/Agt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023765	27023766	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCACCC			P-0021409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	148	857	0	ENST00000324856.7:c.878_883dup	p.Pro293_Thr294dup	p.P293_T294dup	ENST00000324856	NM_006015.4	293	gcc/gCCACCCcc																																																																														
BRCA2	0	MSKCC	GRCh37	13	32910578	32910579	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0021409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	241	663	61	ENST00000380152.3:c.2090_2091dup	p.Leu698AsnfsTer33	p.L698Nfs*33	ENST00000380152		696	gaa/gAAaa																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18277991	18277991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1974	347	977	0	ENST00000222254.8:c.1611G>C	p.Glu537Asp	p.E537D	ENST00000222254	NM_005027.3	537	gaG/gaC																																																																														
AGO2	0	MSKCC	GRCh37	8	141565784	141566048	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATTAAGGATAATTCTGAAAAACTTTAAAAAGGACCAAGGAAAGCCATTCCTTTATGAAATCTCACGTCTTTTACAGGCTCAGCCGGGAGTAGAAAGGATTCTCCTGCATGGAACACAGTCTACACCGCGGGCGATAGCTCAGAACCTGAGAGGGGTCGCAGGGCAGAGACATGCCCCGCAGCCACACGTTCCCCGCCGCCCCACACGTACCCTGCCCCCGTAGAGGATGGAGGGCGGCTGCAGCACCCGCCCAGTCACGTCTGT	CATTAAGGATAATTCTGAAAAACTTTAAAAAGGACCAAGGAAAGCCATTCCTTTATGAAATCTCACGTCTTTTACAGGCTCAGCCGGGAGTAGAAAGGATTCTCCTGCATGGAACACAGTCTACACCGCGGGCGATAGCTCAGAACCTGAGAGGGGTCGCAGGGCAGAGACATGCCCCGCAGCCACACGTTCCCCGCCGCCCCACACGTACCCTGCCCCCGTAGAGGATGGAGGGCGGCTGCAGCACCCGCCCAGTCACGTCTGT	-			P-0021409-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2442	171	19	0	ENST00000220592.5:c.1216_1269+211del		p.X406_splice	ENST00000220592	NM_012154.3	406																																																																															
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	106	879	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0021475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	75	790	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	144	843	3	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																																																														
FLT4	0	MSKCC	GRCh37	5	180057229	180057229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021475-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	71	743	1	ENST00000261937.6:c.509G>A	p.Arg170His	p.R170H	ENST00000261937	NM_182925.4	170	cGc/cAc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0021462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	18	381	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																																																														
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	35	359	1	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55																																																																															
KMT2C	0	MSKCC	GRCh37	7	151877822	151877822	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	29	341	0	ENST00000262189.6:c.7123C>T	p.Gln2375Ter	p.Q2375*	ENST00000262189	NM_170606.2	2375	Caa/Taa																																																																														
RB1	0	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	25	583	1	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga																																																																														
AR	0	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	103	541	1	ENST00000374690.3:c.2226G>T	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgT																																																																														
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	92	349	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																																																														
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	39	359	4	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																																																														
FAT1	0	MSKCC	GRCh37	4	187521299	187521299	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	102	993	1	ENST00000441802.2:c.11856delT	p.Phe3952LeufsTer31	p.F3952Lfs*31	ENST00000441802	NM_005245.3	3952	ttT/tt																																																																														
ASXL1	0	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	106	846	1	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga																																																																														
CSF1R	0	MSKCC	GRCh37	5	149457763	149457763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	156	977	0	ENST00000286301.3:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000286301	NM_005211.3	214	cGg/cAg																																																																														
CARM1	0	MSKCC	GRCh37	19	11027109	11027109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	169	1284	5	ENST00000327064.4:c.874G>A	p.Val292Ile	p.V292I	ENST00000327064	NM_199141.1	292	Gtc/Atc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49425038	49425038	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	198	1214	1	ENST00000301067.7:c.13450C>T	p.Arg4484Ter	p.R4484*	ENST00000301067	NM_003482.3	4484	Cga/Tga																																																																														
TEK	0	MSKCC	GRCh37	9	27185545	27185545	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	103	1093	0	ENST00000380036.4:c.1250delC	p.Pro417LeufsTer10	p.P417Lfs*10	ENST00000380036	NM_000459.3	415	ctC/ct																																																																														
CARD11	0	MSKCC	GRCh37	7	2977606	2977606	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	183	1271	3	ENST00000396946.4:c.1078A>G	p.Met360Val	p.M360V	ENST00000396946	NM_032415.4	360	Atg/Gtg																																																																														
ATR	545	MSKCC	GRCh37	3	142242899	142242899	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750252420		P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	56	938	4	ENST00000350721.4:c.4088C>T	p.Ala1363Val	p.A1363V	ENST00000350721	NM_001184.3	1363	gCg/gTg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845702	151845702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	126	904	1	ENST00000262189.6:c.13310C>T	p.Thr4437Met	p.T4437M	ENST00000262189	NM_170606.2	4437	aCg/aTg																																																																														
SPEN	0	MSKCC	GRCh37	1	16199493	16199493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	72	531	0	ENST00000375759.3:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000375759	NM_015001.2	89	cGg/cAg																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120462062	120462062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	144	909	0	ENST00000256646.2:c.5654C>T	p.Ala1885Val	p.A1885V	ENST00000256646	NM_024408.3	1885	gCc/gTc																																																																														
SMYD3	0	MSKCC	GRCh37	1	246027181	246027181	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	64	753	0	ENST00000388985.4:c.821A>G	p.Asp274Gly	p.D274G	ENST00000388985		274	gAt/gGt																																																																														
BIRC3	0	MSKCC	GRCh37	11	102196003	102196003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	11	521	0	ENST00000263464.3:c.763C>T	p.His255Tyr	p.H255Y	ENST00000263464	NM_001165.4	255	Cat/Tat																																																																														
KMT2D	0	MSKCC	GRCh37	12	49436073	49436073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	87	686	0	ENST00000301067.7:c.5908G>A	p.Asp1970Asn	p.D1970N	ENST00000301067	NM_003482.3	1970	Gac/Aac																																																																														
SMARCD1	0	MSKCC	GRCh37	12	50484150	50484150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	111	948	1	ENST00000394963.4:c.1000C>T	p.Arg334Trp	p.R334W	ENST00000394963	NM_003076.4	334	Cgg/Tgg																																																																														
TBX3	0	MSKCC	GRCh37	12	115118754	115118754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	116	908	0	ENST00000257566.3:c.587A>G	p.Gln196Arg	p.Q196R	ENST00000257566	NM_016569.3	196	cAg/cGg																																																																														
MGA	0	MSKCC	GRCh37	15	41991300	41991301	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	53	934	0	ENST00000219905.7:c.2132_2133del	p.Ile711ArgfsTer33	p.I711Rfs*33	ENST00000219905	NM_001164273.1	711	ATa/a																																																																														
IGF1R	0	MSKCC	GRCh37	15	99478548	99478548	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	93	439	0	ENST00000268035.6:c.3190C>T	p.Arg1064Ter	p.R1064*	ENST00000268035	NM_000875.3	1064	Cga/Tga																																																																														
CYLD	0	MSKCC	GRCh37	16	50815196	50815196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	124	894	0	ENST00000398568.2:c.1549G>T	p.Gly517Cys	p.G517C	ENST00000398568	NM_001042412.1	517	Ggc/Tgc																																																																														
BRCA1	0	MSKCC	GRCh37	17	41201169	41201169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	62	1210	0	ENST00000357654.3:c.5375T>C	p.Val1792Ala	p.V1792A	ENST00000357654	NM_007294.3	1792	gTg/gCg																																																																														
MSI2	0	MSKCC	GRCh37	17	55729505	55729505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	225	1194	2	ENST00000284073.2:c.773C>T	p.Ala258Val	p.A258V	ENST00000284073	NM_138962.2	258	gCg/gTg																																																																														
DOT1L	0	MSKCC	GRCh37	19	2220185	2220185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	142	1147	1	ENST00000398665.3:c.2770G>A	p.Gly924Ser	p.G924S	ENST00000398665	NM_032482.2	924	Ggt/Agt																																																																														
CIC	0	MSKCC	GRCh37	19	42793166	42793166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	79	1234	4	ENST00000575354.2:c.1058G>A	p.Arg353Gln	p.R353Q	ENST00000575354	NM_015125.3	353	cGa/cAa																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944413	40944414	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	143	1048	4	ENST00000373198.4:c.2088_2089del	p.Leu698GlufsTer54	p.L698Efs*54	ENST00000373198	NM_133170.3	696	tcTCcc/tccc																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713757	30713757	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	62	648	0	ENST00000359013.4:c.1157T>A	p.Leu386His	p.L386H	ENST00000359013	NM_001024847.2	386	cTc/cAc																																																																														
TP63	0	MSKCC	GRCh37	3	189612083	189612083	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	142	930	0	ENST00000264731.3:c.1838del	p.Pro613LeufsTer91	p.P613Lfs*91	ENST00000264731	NM_003722.4	612	tCc/tc																																																																														
EPHA5	0	MSKCC	GRCh37	4	66467758	66467758	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	35	549	0	ENST00000273854.3:c.511T>C	p.Tyr171His	p.Y171H	ENST00000273854	NM_004439.5	171	Tac/Cac																																																																														
RICTOR	0	MSKCC	GRCh37	5	39002763	39002763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	14	512	0	ENST00000357387.3:c.266G>A	p.Arg89Gln	p.R89Q	ENST00000357387	NM_152756.3	89	cGg/cAg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121432116	121432116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021355-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	119	1053	3	ENST00000257555.6:c.863G>C	p.Gly288Ala	p.G288A	ENST00000257555		288	gGg/gCg																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0021400-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	26	704	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0021402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	232	960	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0021402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	31	705	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72992630	72992630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	55	651	0	ENST00000268489.5:c.1415C>A	p.Ala472Glu	p.A472E	ENST00000268489	NM_006885.3	472	gCg/gAg																																																																														
EPHA3	0	MSKCC	GRCh37	3	89462305	89462305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			25	29	659	0	ENST00000336596.2:c.1777C>T	p.Leu593Phe	p.L593F	ENST00000336596	NM_005233.5	593	Ctc/Ttc																																																																														
ERRFI1	0	MSKCC	GRCh37	1	8074158	8074159	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0021402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	28	608	0	ENST00000377482.5:c.500_501del	p.Thr167ArgfsTer3	p.T167Rfs*3	ENST00000377482	NM_018948.3	167	aCA/a																																																																														
DNMT1	0	MSKCC	GRCh37	19	10260126	10260126	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0021402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	64	919	0	ENST00000340748.4:c.2538+3G>A		p.X846_splice	ENST00000340748		846																																																																															
KMT2A	0	MSKCC	GRCh37	11	118344505	118344508	+	frameshift_variant	Frame_Shift_Del	DEL	CCGG	CCGG	-			P-0021402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	18	412	1	ENST00000534358.1:c.2631_2634del	p.Asp877GlufsTer71	p.D877Efs*71	ENST00000534358	NM_005933.3	877	gaCCGG/ga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	107	959	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0021404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	35	620	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																																																														
PLCG2	0	MSKCC	GRCh37	16	81969923	81969923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	40	817	1	ENST00000359376.3:c.2992G>A	p.Asp998Asn	p.D998N	ENST00000359376	NM_002661.3	998	Gac/Aac																																																																														
MDC1	0	MSKCC	GRCh37	6	30671287	30671287	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	61	712	0	ENST00000376406.3:c.5590A>G	p.Arg1864Gly	p.R1864G	ENST00000376406	NM_014641.2	1864	Aga/Gga																																																																														
TGFBR1	0	MSKCC	GRCh37	9	101900214	101900214	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021404-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	111	612	0	ENST00000374994.4:c.648T>G	p.Phe216Leu	p.F216L	ENST00000374994	NM_004612.2	216	ttT/ttG																																																																														
ERBB4	0	MSKCC	GRCh37	2	212537911	212537911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	115	678	0	ENST00000342788.4:c.1694G>A	p.Gly565Asp	p.G565D	ENST00000342788	NM_005235.2	565	gGc/gAc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49432330	49432330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	124	835	0	ENST00000301067.7:c.8809C>G	p.Pro2937Ala	p.P2937A	ENST00000301067	NM_003482.3	2937	Cca/Gca																																																																														
TBX3	0	MSKCC	GRCh37	12	115112097	115112097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021469-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	98	869	0	ENST00000257566.3:c.1643G>A	p.Gly548Glu	p.G548E	ENST00000257566	NM_016569.3	548	gGg/gAg																																																																														
JUN	0	MSKCC	GRCh37	1	59248715	59248715	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1002	76	1346	0	ENST00000371222.2:c.28T>C	p.Tyr10His	p.Y10H	ENST00000371222	NM_002228.3	10	Tat/Cat																																																																														
BMPR1A	0	MSKCC	GRCh37	10	88681410	88681410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	59	681	0	ENST00000372037.3:c.1300G>A	p.Gly434Ser	p.G434S	ENST00000372037	NM_004329.2	434	Ggc/Agc																																																																														
SUFU	0	MSKCC	GRCh37	10	104309819	104309819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	53	752	0	ENST00000369902.3:c.410C>T	p.Pro137Leu	p.P137L	ENST00000369902	NM_016169.3	137	cCc/cTc																																																																														
PGR	0	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	35	530	1	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga																																																																														
ARID2	0	MSKCC	GRCh37	12	46231457	46231457	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	39	550	0	ENST00000334344.6:c.1297T>G	p.Cys433Gly	p.C433G	ENST00000334344	NM_152641.2	433	Tgc/Ggc																																																																														
ARID2	0	MSKCC	GRCh37	12	46246477	46246489	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAAACAGTCGC	GGGAAACAGTCGC	-			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	25	492	0	ENST00000334344.6:c.4571_4583del	p.Arg1524LysfsTer7	p.R1524Kfs*7	ENST00000334344	NM_152641.2	1524	aGGGAAACAGTCGCa/aa																																																																														
FLT3	0	MSKCC	GRCh37	13	28622553	28622553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	47	627	0	ENST00000241453.7:c.1064C>T	p.Ser355Leu	p.S355L	ENST00000241453	NM_004119.2	355	tCa/tTa																																																																														
IGF1R	0	MSKCC	GRCh37	15	99486260	99486260	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	64	1029	0	ENST00000268035.6:c.3566T>C	p.Phe1189Ser	p.F1189S	ENST00000268035	NM_000875.3	1189	tTc/tCc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81965111	81965111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	62	807	0	ENST00000359376.3:c.2591C>T	p.Pro864Leu	p.P864L	ENST00000359376	NM_002661.3	864	cCt/cTt																																																																														
PAK7	0	MSKCC	GRCh37	20	9560913	9560913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	69	778	2	ENST00000353224.5:c.869C>T	p.Ser290Leu	p.S290L	ENST00000353224	NM_177990.2	290	tCg/tTg																																																																														
KDR	3791	MSKCC	GRCh37	4	55955863	55955863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868047715		P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	52	655	0	ENST00000263923.4:c.3299C>T	p.Ser1100Phe	p.S1100F	ENST00000263923	NM_002253.2	1100	tCc/tTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	42	872	0				ENST00000310581	NM_198253.2																																																																																
APC	0	MSKCC	GRCh37	5	112116491	112116491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	27	438	0	ENST00000257430.4:c.536C>T	p.Ser179Phe	p.S179F	ENST00000257430	NM_000038.5	179	tCc/tTc																																																																														
IKZF1	0	MSKCC	GRCh37	7	50450261	50450261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	53	896	0	ENST00000331340.3:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000331340	NM_006060.4	149	Cag/Tag																																																																														
BRAF	0	MSKCC	GRCh37	7	140449184	140449184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	50	733	0	ENST00000288602.6:c.1895C>T	p.Pro632Leu	p.P632L	ENST00000288602	NM_004333.4	632	cCa/cTa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	42	763	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151874526	151874526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	43	587	0	ENST00000262189.6:c.8012C>T	p.Thr2671Met	p.T2671M	ENST00000262189	NM_170606.2	2671	aCg/aTg																																																																														
GNAQ	0	MSKCC	GRCh37	9	80343498	80343498	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	101	823	0	ENST00000286548.4:c.821A>C	p.Asn274Thr	p.N274T	ENST00000286548	NM_002072.3	274	aAc/aCc																																																																														
PTCH1	0	MSKCC	GRCh37	9	98242835	98242835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021331-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	121	755	1	ENST00000331920.6:c.782C>T	p.Pro261Leu	p.P261L	ENST00000331920	NM_000264.3	261	cCt/cTt																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	100	918	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
APC	0	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	64	379	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																																																														
TP53	0	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	208	1097	1	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31384605	31384605	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	136	921	0	ENST00000328111.2:c.1307T>C	p.Leu436Ser	p.L436S	ENST00000328111	NM_006892.3	436	tTg/tCg																																																																														
APC	0	MSKCC	GRCh37	5	112173346	112173346	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	38	458	0	ENST00000257430.4:c.2055G>A	p.Trp685Ter	p.W685*	ENST00000257430	NM_000038.5	685	tgG/tgA																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	297	1164	0				ENST00000310581	NM_198253.2																																																																																
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	103	631	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																																																														
ERCC2	0	MSKCC	GRCh37	19	45872219	45872219	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	430	1303	0	ENST00000391945.4:c.215A>G	p.Tyr72Cys	p.Y72C	ENST00000391945	NM_000400.3	72	tAc/tGc																																																																														
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	489	1309	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44942737	44942737	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	338	553	0	ENST00000377967.4:c.3317T>G	p.Leu1106Arg	p.L1106R	ENST00000377967	NM_021140.2	1106	cTt/cGt																																																																														
PPARG	0	MSKCC	GRCh37	3	12434122	12434122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	151	720	1	ENST00000287820.6:c.490C>T	p.Arg164Trp	p.R164W	ENST00000287820	NM_015869.4	164	Cgg/Tgg																																																																														
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	416	590	0	ENST00000374080.3:c.130G>C	p.Gly44Arg	p.G44R	ENST00000374080		44	Ggt/Cgt																																																																														
ARID1A	0	MSKCC	GRCh37	1	27087891	27087909	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGCCACCCAGTGGCCAG	TCGGCCACCCAGTGGCCAG	-			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	250	1162	0	ENST00000324856.7:c.2182_2200del	p.Pro728ThrfsTer8	p.P728Tfs*8	ENST00000324856	NM_006015.4	726	ccTCGGCCACCCAGTGGCCAG/cc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56494858	56494858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	281	923	0	ENST00000267101.3:c.3215C>A	p.Ser1072Tyr	p.S1072Y	ENST00000267101	NM_001982.3	1072	tCt/tAt																																																																														
ERBB3	0	MSKCC	GRCh37	12	56495511	56495511	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	291	976	0	ENST00000267101.3:c.3701C>G	p.Ser1234Cys	p.S1234C	ENST00000267101	NM_001982.3	1234	tCt/tGt																																																																														
RAD51B	0	MSKCC	GRCh37	14	68352665	68352665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	143	813	0	ENST00000487270.1:c.532C>T	p.His178Tyr	p.H178Y	ENST00000487270	NM_133509.3	178	Cat/Tat																																																																														
INHA	0	MSKCC	GRCh37	2	220439430	220439430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	216	635	1	ENST00000243786.2:c.283G>A	p.Asp95Asn	p.D95N	ENST00000243786	NM_002191.3	95	Gac/Aac																																																																														
PRKCI	0	MSKCC	GRCh37	3	170016856	170016856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	285	1132	0	ENST00000295797.4:c.1661C>T	p.Ser554Phe	p.S554F	ENST00000295797	NM_002740.5	554	tCt/tTt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1803150	1803150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	788	1406	1	ENST00000260795.2:c.502G>T	p.Ala168Ser	p.A168S	ENST00000260795		168	Gcc/Tcc																																																																														
APC	0	MSKCC	GRCh37	5	112174365	112174365	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021484-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	85	449	0	ENST00000257430.4:c.3074T>A	p.Ile1025Lys	p.I1025K	ENST00000257430	NM_000038.5	1025	aTa/aAa																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0017517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			284	92	535	0				ENST00000310581	NM_198253.2																																																																																
KDM6A	0	MSKCC	GRCh37	X	44950066	44950066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			553	45	742	0	ENST00000377967.4:c.3835C>T	p.Arg1279Ter	p.R1279*	ENST00000377967	NM_021140.2	1279	Cga/Tga																																																																														
CREBBP	0	MSKCC	GRCh37	16	3817729	3817729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0017517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	81	598	0	ENST00000262367.5:c.3242G>A	p.Arg1081His	p.R1081H	ENST00000262367	NM_004380.2	1081	cGc/cAc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692980	89692980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0017517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			378	26	483	0	ENST00000371953.3:c.464A>G	p.Tyr155Cys	p.Y155C	ENST00000371953	NM_000314.4	155	tAt/tGt																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139390873	139390874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0017517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			708	83	886	0	ENST00000277541.6:c.7316_7317dup	p.Gln2440AlafsTer38	p.Q2440Afs*38	ENST00000277541	NM_017617.3	2439	-/GC																																																																														
KDM6A	0	MSKCC	GRCh37	X	44949128	44949129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			544	39	615	0	ENST00000377967.4:c.3690dup	p.Ile1231TyrfsTer20	p.I1231Yfs*20	ENST00000377967	NM_021140.2	1230	gct/gcTt																																																																														
JUN	0	MSKCC	GRCh37	1	59247908	59247908	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	152	991	1	ENST00000371222.2:c.835del	p.Arg279GlyfsTer6	p.R279Gfs*6	ENST00000371222	NM_002228.3	279	Cgg/gg																																																																														
SETD2	0	MSKCC	GRCh37	3	47164665	47164665	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0017517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			351	57	398	0	ENST00000409792.3:c.1461del	p.Tyr488IlefsTer15	p.Y488Ifs*15	ENST00000409792	NM_014159.6	487	tcC/tc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157150505	157150505	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0017517-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			696	37	591	1	ENST00000346085.5:c.1687C>T	p.Gln563Ter	p.Q563*	ENST00000346085	NM_020732.3	563	Cag/Tag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	59	860	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	116	963	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																																																														
DICER1	0	MSKCC	GRCh37	14	95571439	95571439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	29	383	0	ENST00000343455.3:c.3238G>A	p.Val1080Met	p.V1080M	ENST00000343455	NM_177438.2	1080	Gtg/Atg																																																																														
BABAM1	0	MSKCC	GRCh37	19	17379657	17379657	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021472-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	22	599	0	ENST00000359435.4:c.42G>C	p.Glu14Asp	p.E14D	ENST00000359435	NM_001033549.1	14	gaG/gaC																																																																														
PTEN	0	MSKCC	GRCh37	10	89653835	89653835	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	49	527	0	ENST00000371953.3:c.133delG	p.Val45TyrfsTer9	p.V45Yfs*9	ENST00000371953	NM_000314.4	45	Gta/ta																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56180528	56180528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	51	396	0	ENST00000399503.3:c.3857A>T	p.Glu1286Val	p.E1286V	ENST00000399503	NM_005921.1	1286	gAa/gTa																																																																														
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	40	376	0	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	187	741	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	270	996	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																																																														
RAD51D	0	MSKCC	GRCh37	17	33446177	33446177	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	136	689	0	ENST00000335858.7:c.97del	p.Ser33LeufsTer7	p.S33Lfs*7	ENST00000335858	NM_133629.2	33	Tct/ct																																																																														
CDK12	0	MSKCC	GRCh37	17	37682386	37682386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021354-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1412	130	689	0	ENST00000447079.4:c.3577G>C	p.Glu1193Gln	p.E1193Q	ENST00000447079	NM_015083.1	1193	Gaa/Caa																																																																														
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0021399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	60	671	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																																																														
GNAS	0	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	32	596	3	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																														
NF1	0	MSKCC	GRCh37	17	29509577	29509577	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	46	873	0	ENST00000358273.4:c.782A>G	p.Lys261Arg	p.K261R	ENST00000358273	NM_001042492.2	261	aAa/aGa																																																																														
CIC	0	MSKCC	GRCh37	19	42797951	42797951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	88	908	2	ENST00000575354.2:c.4007del	p.Pro1336ArgfsTer3	p.P1336Rfs*3	ENST00000575354	NM_015125.3	1335	Ccc/cc																																																																														
PDCD1	0	MSKCC	GRCh37	2	242794922	242794922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	54	964	4	ENST00000334409.5:c.287G>A	p.Arg96His	p.R96H	ENST00000334409	NM_005018.2	96	cGt/cAt																																																																														
MYC	0	MSKCC	GRCh37	8	128750945	128750945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	20	595	0	ENST00000377970.2:c.482C>T	p.Ser161Leu	p.S161L	ENST00000377970	NM_002467.4	161	tCa/tTa																																																																														
KDM6A	0	MSKCC	GRCh37	X	44969496	44969496	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0021461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	21	276	0	ENST00000377967.4:c.4176+2T>G		p.X1392_splice	ENST00000377967	NM_021140.2	1392																																																																															
TP53	0	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	824	759	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG																																																																														
MYC	0	MSKCC	GRCh37	8	128750684	128750684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	988	549	1	ENST00000377970.2:c.221C>A	p.Pro74Gln	p.P74Q	ENST00000377970	NM_002467.4	74	cCg/cAg																																																																														
SPOP	0	MSKCC	GRCh37	17	47696461	47696461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	352	512	0	ENST00000347630.2:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000347630	NM_001007230.1	121	cGg/cAg																																																																														
CARM1	0	MSKCC	GRCh37	19	11032302	11032302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	133	499	0	ENST00000327064.4:c.1696G>A	p.Ala566Thr	p.A566T	ENST00000327064	NM_199141.1	566	Gcc/Acc																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627279	14627279	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0021401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1735	143	744	1	ENST00000254322.2:c.791A>G	p.Glu264Gly	p.E264G	ENST00000254322	NM_006145.1	264	gAg/gGg																																																																														
DNAJB1	0	MSKCC	GRCh37	19	14627472	14627472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	92	549	2	ENST00000254322.2:c.598G>A	p.Glu200Lys	p.E200K	ENST00000254322	NM_006145.1	200	Gaa/Aaa																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250694	26250694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	163	500	0	ENST00000446824.2:c.140T>C	p.Val47Ala	p.V47A	ENST00000446824	NM_021018.2	47	gTc/gCc																																																																														
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021401-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	11	579	0	ENST00000374080.3:c.130G>C	p.Gly44Arg	p.G44R	ENST00000374080		44	Ggt/Cgt																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	126	748	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0021459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	123	647	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																																																															
BCOR	0	MSKCC	GRCh37	X	39932474	39932474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	53	394	0	ENST00000378444.4:c.2125G>A	p.Gly709Ser	p.G709S	ENST00000378444	NM_001123385.1	709	Ggc/Agc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0021356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			773	32	854	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																																																														
TP53	0	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021356-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1129	73	1260	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	83	683	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	83	683	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	83	683	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																																																														
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	123	819	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																																																														
MDC1	0	MSKCC	GRCh37	6	30675997	30675997	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148637924		P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	85	761	1	ENST00000376406.3:c.2359G>A	p.Gly787Arg	p.G787R	ENST00000376406	NM_014641.2	787	Gga/Aga																																																																														
BRCA2	0	MSKCC	GRCh37	13	32930687	32930687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	53	583	0	ENST00000380152.3:c.7558C>G	p.Arg2520Gly	p.R2520G	ENST00000380152		2520	Cga/Gga																																																																														
TCF3	0	MSKCC	GRCh37	19	1619842	1619842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	56	956	0	ENST00000344749.5:c.1104G>T	p.Gln368His	p.Q368H	ENST00000344749	NM_001136139.2	368	caG/caT																																																																														
INSR	0	MSKCC	GRCh37	19	7267902	7267902	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	16	317	0	ENST00000302850.5:c.106C>G	p.Pro36Ala	p.P36A	ENST00000302850	NM_000208.2	36	Ccc/Gcc																																																																														
BAP1	0	MSKCC	GRCh37	3	52441196	52441196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	26	358	1	ENST00000460680.1:c.574G>T	p.Asp192Tyr	p.D192Y	ENST00000460680	NM_004656.3	192	Gac/Tac																																																																														
BCL6	0	MSKCC	GRCh37	3	187446328	187446328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	52	602	0	ENST00000232014.4:c.1360A>G	p.Met454Val	p.M454V	ENST00000232014	NM_001130845.1	454	Atg/Gtg																																																																														
FAT1	0	MSKCC	GRCh37	4	187629146	187629147	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	89	607	3	ENST00000441802.2:c.1835_1836delinsCT	p.Leu612Pro	p.L612P	ENST00000441802	NM_005245.3	612	cTG/cCT																																																																														
NSD1	0	MSKCC	GRCh37	5	176678767	176678767	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	35	627	0	ENST00000439151.2:c.4678G>C	p.Ala1560Pro	p.A1560P	ENST00000439151	NM_022455.4	1560	Gct/Cct																																																																														
LATS1	0	MSKCC	GRCh37	6	150016210	150016210	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	33	466	0	ENST00000253339.5:c.496G>T	p.Gly166Trp	p.G166W	ENST00000253339		166	Ggg/Tgg																																																																														
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	103	833	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																																																														
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	165	725	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																																																														
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	72	610	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																																																														
EP300	0	MSKCC	GRCh37	22	41572252	41572254	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TCT	TCT	-			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	95	759	0	ENST00000263253.7:c.4785_4787delCTT	p.Phe1596del	p.F1596del	ENST00000263253	NM_001429.3	1594	gTCTtc/gtc																																																																														
CASP8	841	MSKCC	GRCh37	2	202149798	202149799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	71	817	0	ENST00000358485.4:c.1245dup	p.Ile416TyrfsTer8	p.I416Yfs*8	ENST00000358485	NM_001080125.1	413	-/T																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	116	684	0	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																																																														
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	112	747	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																																																														
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	80	869	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																																																														
PPM1D	0	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	72	879	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																																																														
RAD50	0	MSKCC	GRCh37	5	131973851	131973851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	79	616	0	ENST00000265335.6:c.3554G>A	p.Arg1185Gln	p.R1185Q	ENST00000265335		1185	cGa/cAa																																																																														
MTOR	0	MSKCC	GRCh37	1	11217234	11217234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	99	797	3	ENST00000361445.4:c.4444C>T	p.Arg1482Cys	p.R1482C	ENST00000361445	NM_004958.3	1482	Cgc/Tgc																																																																														
PAX5	0	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	90	847	4	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																																																														
SETD2	0	MSKCC	GRCh37	3	47162932	47162932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	71	729	1	ENST00000409792.3:c.3194G>A	p.Arg1065His	p.R1065H	ENST00000409792	NM_014159.6	1065	cGt/cAt																																																																														
RNF43	0	MSKCC	GRCh37	17	56435312	56435312	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139405076		P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	122	831	6	ENST00000407977.2:c.1825C>T	p.Arg609Trp	p.R609W	ENST00000407977		609	Cgg/Tgg																																																																														
SETD2	0	MSKCC	GRCh37	3	47103754	47103755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	73	858	2	ENST00000409792.3:c.6190_6191dup	p.Asp2064GlufsTer84	p.D2064Efs*84	ENST00000409792	NM_014159.6	2064	gac/gaGAc																																																																														
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	100	795	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																																																														
APC	0	MSKCC	GRCh37	5	112128198	112128198	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	65	799	0	ENST00000257430.4:c.704del	p.Leu235TyrfsTer58	p.L235Yfs*58	ENST00000257430	NM_000038.5	234	cTt/ct																																																																														
CDKN1A	0	MSKCC	GRCh37	6	36652257	36652257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	53	753	2	ENST00000244741.5:c.379G>A	p.Ala127Thr	p.A127T	ENST00000244741	NM_000389.4	127	Gct/Act																																																																														
MSI1	4440	MSKCC	GRCh37	12	120800902	120800903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs748469666		P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	68	803	4	ENST00000257552.2:c.345dup	p.Leu116AlafsTer15	p.L116Afs*15	ENST00000257552	NM_002442.3	115	-/G																																																																														
UPF1	0	MSKCC	GRCh37	19	18960950	18960950	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	129	901	1	ENST00000262803.5:c.532del	p.Glu178ArgfsTer55	p.E178Rfs*55	ENST00000262803	NM_002911.3	176	ctG/ct																																																																														
SPRED1	0	MSKCC	GRCh37	15	38616977	38616977	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	68	622	0	ENST00000299084.4:c.395delA	p.Asn132MetfsTer20	p.N132Mfs*20	ENST00000299084	NM_152594.2	130	tcA/tc																																																																														
ASXL2	0	MSKCC	GRCh37	2	25991697	25991697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	105	712	1	ENST00000435504.4:c.545G>A	p.Cys182Tyr	p.C182Y	ENST00000435504		182	tGc/tAc																																																																														
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	74	728	5	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																																																															
KMT2B	0	MSKCC	GRCh37	19	36216189	36216189	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	48	858	1	ENST00000222270.7:c.3602del	p.Pro1201ArgfsTer154	p.P1201Rfs*154	ENST00000222270	NM_014727.1	1199	ggC/gg																																																																														
BRCA2	0	MSKCC	GRCh37	13	32912895	32912895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	63	662	0	ENST00000380152.3:c.4403C>G	p.Ser1468Cys	p.S1468C	ENST00000380152		1468	tCt/tGt																																																																														
SOS1	0	MSKCC	GRCh37	2	39222519	39222520	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	65	711	2	ENST00000402219.2:c.3090dup	p.Tyr1031IlefsTer2	p.Y1031Ifs*2	ENST00000402219	NM_005633.3	1030	-/A																																																																														
NTRK1	0	MSKCC	GRCh37	1	156838380	156838380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202030811		P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	153	978	3	ENST00000524377.1:c.658C>T	p.Arg220Trp	p.R220W	ENST00000524377	NM_002529.3	220	Cgg/Tgg																																																																														
JAK1	0	MSKCC	GRCh37	1	65325855	65325855	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	102	672	2	ENST00000342505.4:c.1267C>A	p.Leu423Ile	p.L423I	ENST00000342505	NM_002227.2	423	Ctc/Atc																																																																														
FGFR2	0	MSKCC	GRCh37	10	123324036	123324036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	87	872	2	ENST00000358487.5:c.434G>A	p.Ser145Asn	p.S145N	ENST00000358487	NM_000141.4	145	aGt/aAt																																																																														
CCND1	0	MSKCC	GRCh37	11	69465896	69465896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	102	829	2	ENST00000227507.2:c.734G>A	p.Arg245Gln	p.R245Q	ENST00000227507	NM_053056.2	245	cGg/cAg																																																																														
PGR	0	MSKCC	GRCh37	11	100998742	100998742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	28	824	3	ENST00000325455.5:c.1060G>A	p.Ala354Thr	p.A354T	ENST00000325455	NM_001202474.3	354	Gct/Act																																																																														
ATM	0	MSKCC	GRCh37	11	108117706	108117707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	27	488	0	ENST00000278616.4:c.921dup	p.Trp308MetfsTer10	p.W308Mfs*10	ENST00000278616	NM_000051.3	306	aca/acAa																																																																														
KMT2A	0	MSKCC	GRCh37	11	118344518	118344518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	46	525	1	ENST00000534358.1:c.2644A>G	p.Lys882Glu	p.K882E	ENST00000534358	NM_005933.3	882	Aag/Gag																																																																														
KMT2A	0	MSKCC	GRCh37	11	118373487	118373487	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	53	535	0	ENST00000534358.1:c.6880T>C	p.Ser2294Pro	p.S2294P	ENST00000534358	NM_005933.3	2294	Tcc/Ccc																																																																														
CBL	0	MSKCC	GRCh37	11	119077131	119077131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	45	479	0	ENST00000264033.4:c.4G>A	p.Ala2Thr	p.A2T	ENST00000264033	NM_005188.3	2	Gcc/Acc																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431880	49431880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	124	880	1	ENST00000301067.7:c.9259C>T	p.Arg3087Trp	p.R3087W	ENST00000301067	NM_003482.3	3087	Cgg/Tgg																																																																														
POLE	0	MSKCC	GRCh37	12	133249278	133249278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	128	955	1	ENST00000320574.5:c.1621G>A	p.Gly541Arg	p.G541R	ENST00000320574	NM_006231.2	541	Ggg/Agg																																																																														
FLT1	0	MSKCC	GRCh37	13	28885870	28885870	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	49	582	1	ENST00000282397.4:c.3493-1G>T		p.X1165_splice	ENST00000282397	NM_002019.4	1165																																																																															
AKT1	0	MSKCC	GRCh37	14	105258971	105258971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	88	876	1	ENST00000349310.3:c.10G>A	p.Val4Met	p.V4M	ENST00000349310	NM_001014432.1	4	Gtg/Atg																																																																														
PALB2	0	MSKCC	GRCh37	16	23647530	23647530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	54	863	2	ENST00000261584.4:c.337C>A	p.Pro113Thr	p.P113T	ENST00000261584	NM_024675.3	113	Cca/Aca																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11998988	11998988	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	39	576	0	ENST00000353533.5:c.493del	p.Tyr165MetfsTer32	p.Y165Mfs*32	ENST00000353533	NM_003010.3	164	Ttt/tt																																																																														
NCOR1	0	MSKCC	GRCh37	17	15974829	15974829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	52	670	0	ENST00000268712.3:c.4046G>A	p.Arg1349His	p.R1349H	ENST00000268712	NM_006311.3	1349	cGt/cAt																																																																														
SOX9	0	MSKCC	GRCh37	17	70119683	70119683	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	98	690	0	ENST00000245479.2:c.686-1G>T		p.X229_splice	ENST00000245479	NM_000346.3	229																																																																															
STK11	0	MSKCC	GRCh37	19	1226512	1226512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	127	919	2	ENST00000326873.7:c.1168G>A	p.Val390Met	p.V390M	ENST00000326873	NM_000455.4	390	Gtg/Atg																																																																														
PTPRS	0	MSKCC	GRCh37	19	5211748	5211748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	134	873	1	ENST00000357368.4:c.5087G>A	p.Arg1696His	p.R1696H	ENST00000357368	NM_002850.3	1696	cGc/cAc																																																																														
CALR	0	MSKCC	GRCh37	19	13054418	13054418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	114	751	0	ENST00000316448.5:c.1028G>A	p.Gly343Asp	p.G343D	ENST00000316448	NM_004343.3	343	gGc/gAc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15276274	15276274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	133	901	0	ENST00000263388.2:c.5720C>T	p.Ser1907Leu	p.S1907L	ENST00000263388	NM_000435.2	1907	tCa/tTa																																																																														
BRD4	0	MSKCC	GRCh37	19	15354055	15354055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	69	700	1	ENST00000263377.2:c.2825C>T	p.Thr942Met	p.T942M	ENST00000263377	NM_058243.2	942	aCg/aTg																																																																														
AXL	0	MSKCC	GRCh37	19	41762431	41762431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			750	111	758	2	ENST00000301178.4:c.2111G>A	p.Arg704His	p.R704H	ENST00000301178	NM_021913.4	704	cGc/cAc																																																																														
ERF	0	MSKCC	GRCh37	19	42753452	42753452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	124	929	3	ENST00000222329.4:c.812C>T	p.Thr271Met	p.T271M	ENST00000222329	NM_006494.2	271	aCg/aTg																																																																														
MSH2	0	MSKCC	GRCh37	2	47637357	47637357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	96	995	1	ENST00000233146.2:c.491G>A	p.Gly164Glu	p.G164E	ENST00000233146	NM_000251.2	164	gGg/gAg																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098831	178098831	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1135118		P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	121	951	2	ENST00000397062.3:c.214G>A	p.Ala72Thr	p.A72T	ENST00000397062	NM_006164.4	72	Gct/Act																																																																														
SF3B1	0	MSKCC	GRCh37	2	198274670	198274670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	97	770	0	ENST00000335508.6:c.728A>G	p.Glu243Gly	p.E243G	ENST00000335508	NM_012433.2	243	gAg/gGg																																																																														
IRS1	0	MSKCC	GRCh37	2	227661277	227661278	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	111	897	0	ENST00000305123.5:c.2177dup	p.Leu726PhefsTer6	p.L726Ffs*6	ENST00000305123	NM_005544.2	726	tta/ttTa																																																																														
IRS1	0	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	38	649	1	ENST00000305123.5:c.1790_1791dup	p.His598GlyfsTer39	p.H598Gfs*39	ENST00000305123	NM_005544.2	597	-/GG																																																																														
IRS1	0	MSKCC	GRCh37	2	227662850	227662850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	133	802	6	ENST00000305123.5:c.605C>T	p.Ala202Val	p.A202V	ENST00000305123	NM_005544.2	202	gCg/gTg																																																																														
NCOA3	0	MSKCC	GRCh37	20	46264413	46264413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	82	664	0	ENST00000371998.3:c.1460G>A	p.Arg487His	p.R487H	ENST00000371998		487	cGt/cAt																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42851110	42851110	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	77	695	0	ENST00000398585.3:c.783del	p.Lys261AsnfsTer19	p.K261Nfs*19	ENST00000398585	NM_001135099.1	261	aaA/aa																																																																														
EP300	0	MSKCC	GRCh37	22	41574430	41574430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	30	780	0	ENST00000263253.7:c.6715A>G	p.Met2239Val	p.M2239V	ENST00000263253	NM_001429.3	2239	Atg/Gtg																																																																														
RAF1	0	MSKCC	GRCh37	3	12645724	12645724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	27	510	0	ENST00000251849.4:c.745G>T	p.Gly249Cys	p.G249C	ENST00000251849	NM_002880.3	249	Ggt/Tgt																																																																														
MYD88	0	MSKCC	GRCh37	3	38181893	38181893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	67	471	0	ENST00000396334.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000396334	NM_002468.4	173	Cgt/Tgt																																																																														
MST1R	0	MSKCC	GRCh37	3	49927391	49927391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	105	838	2	ENST00000296474.3:c.3913C>T	p.Arg1305Cys	p.R1305C	ENST00000296474	NM_002447.2	1305	Cgc/Tgc																																																																														
BAP1	0	MSKCC	GRCh37	3	52437527	52437527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs71651687		P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	134	859	0	ENST00000460680.1:c.1634G>A	p.Arg545His	p.R545H	ENST00000460680	NM_004656.3	545	cGc/cAc																																																																														
EPHA3	0	MSKCC	GRCh37	3	89480468	89480468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	52	501	2	ENST00000336596.2:c.2305C>T	p.Arg769Cys	p.R769C	ENST00000336596	NM_005233.5	769	Cgt/Tgt																																																																														
FGFR3	0	MSKCC	GRCh37	4	1808391	1808391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17882190		P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	141	1369	5	ENST00000260795.2:c.2149G>A	p.Ala717Thr	p.A717T	ENST00000260795		717	Gcc/Acc																																																																														
KDR	0	MSKCC	GRCh37	4	55963865	55963865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	74	837	1	ENST00000263923.4:c.2578G>A	p.Ala860Thr	p.A860T	ENST00000263923	NM_002253.2	860	Gca/Aca																																																																														
FAT1	0	MSKCC	GRCh37	4	187509831	187509831	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	51	432	0	ENST00000441802.2:c.13682T>C	p.Met4561Thr	p.M4561T	ENST00000441802	NM_005245.3	4561	aTg/aCg																																																																														
TERT	0	MSKCC	GRCh37	5	1294385	1294385	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	102	758	0	ENST00000310581.5:c.616A>G	p.Ser206Gly	p.S206G	ENST00000310581	NM_198253.2	206	Agc/Ggc																																																																														
DROSHA	0	MSKCC	GRCh37	5	31526438	31526438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	163	1200	1	ENST00000344624.3:c.602G>A	p.Ser201Asn	p.S201N	ENST00000344624		201	aGt/aAt																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149512491	149512491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	52	582	0	ENST00000261799.4:c.949C>T	p.Arg317Trp	p.R317W	ENST00000261799	NM_002609.3	317	Cgg/Tgg																																																																														
HIST1H3E	0	MSKCC	GRCh37	6	26225717	26225717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	147	879	0	ENST00000360408.1:c.335C>T	p.Ala112Val	p.A112V	ENST00000360408	NM_003532.2	112	gCt/gTt																																																																														
HIST1H3F	0	MSKCC	GRCh37	6	26250695	26250695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	89	755	0	ENST00000446824.2:c.139G>A	p.Val47Ile	p.V47I	ENST00000446824	NM_021018.2	47	Gtc/Atc																																																																														
HLA-B	0	MSKCC	GRCh37	6	31323315	31323315	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	38	488	0	ENST00000412585.2:c.674T>G	p.Leu225Arg	p.L225R	ENST00000412585	NM_005514.6	225	cTg/cGg																																																																														
PRDM1	0	MSKCC	GRCh37	6	106553264	106553264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	113	691	0	ENST00000369096.4:c.1229A>G	p.Tyr410Cys	p.Y410C	ENST00000369096	NM_001198.3	410	tAc/tGc																																																																														
SESN1	0	MSKCC	GRCh37	6	109321836	109321836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	84	837	0	ENST00000436639.2:c.587A>G	p.His196Arg	p.H196R	ENST00000436639	NM_014454.2	196	cAt/cGt																																																																														
TNFAIP3	0	MSKCC	GRCh37	6	138200098	138200098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	80	603	0	ENST00000237289.4:c.1516G>A	p.Ala506Thr	p.A506T	ENST00000237289	NM_001270507.1	506	Gcc/Acc																																																																														
ARID1B	0	MSKCC	GRCh37	6	157100592	157100592	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	103	806	0	ENST00000346085.5:c.1529T>C	p.Met510Thr	p.M510T	ENST00000346085	NM_020732.3	510	aTg/aCg																																																																														
MET	0	MSKCC	GRCh37	7	116397800	116397800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	72	887	0	ENST00000397752.3:c.2074A>G	p.Ile692Val	p.I692V	ENST00000397752	NM_000245.2	692	Att/Gtt																																																																														
SMO	0	MSKCC	GRCh37	7	128850221	128850221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	96	759	0	ENST00000249373.3:c.1484C>T	p.Thr495Ile	p.T495I	ENST00000249373	NM_005631.4	495	aCc/aTc																																																																														
BRAF	0	MSKCC	GRCh37	7	140534444	140534444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	153	732	0	ENST00000288602.6:c.469G>A	p.Val157Ile	p.V157I	ENST00000288602	NM_004333.4	157	Gtt/Att																																																																														
AGO2	0	MSKCC	GRCh37	8	141568653	141568653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	101	864	1	ENST00000220592.5:c.809C>T	p.Thr270Met	p.T270M	ENST00000220592	NM_012154.3	270	aCg/aTg																																																																														
RECQL4	0	MSKCC	GRCh37	8	145741379	145741379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	164	970	1	ENST00000428558.2:c.1124G>A	p.Arg375His	p.R375H	ENST00000428558	NM_004260.3	375	cGc/cAc																																																																														
TSC1	0	MSKCC	GRCh37	9	135772716	135772716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	94	654	1	ENST00000298552.3:c.2830G>A	p.Ala944Thr	p.A944T	ENST00000298552	NM_001162426.1	944	Gca/Aca																																																																														
RXRA	6256	MSKCC	GRCh37	9	137300039	137300040	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755912201		P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	101	912	4	ENST00000481739.1:c.331dup	p.Leu111ProfsTer70	p.L111Pfs*70	ENST00000481739	NM_002957.4	108	-/C																																																																														
ARAF	0	MSKCC	GRCh37	X	47426667	47426667	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021393-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	61	432	0	ENST00000377045.4:c.912G>T	p.Glu304Asp	p.E304D	ENST00000377045	NM_001654.4	304	gaG/gaT																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	54	624	0				ENST00000310581	NM_198253.2																																																																																
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0021361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	173	692	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																																																														
BAP1	0	MSKCC	GRCh37	3	52437813	52437813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	102	796	1	ENST00000460680.1:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000460680	NM_004656.3	450	Gag/Aag																																																																														
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	118	471	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																																																														
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	218	931	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928069	178928086	+	inframe_deletion	In_Frame_Del	DEL	TCATGGATTAGAAGATTT	TCATGGATTAGAAGATTT	-			P-0021391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1234	141	829	0	ENST00000263967.3:c.1347_1364del	p.His450_Leu455del	p.H450_L455del	ENST00000263967	NM_006218.2	449	ccTCATGGATTAGAAGATTTg/ccg																																																																														
ELF3	0	MSKCC	GRCh37	1	201982975	201982975	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	70	862	0	ENST00000359651.3:c.824T>C	p.Leu275Pro	p.L275P	ENST00000359651		275	cTg/cCg																																																																														
BRAF	0	MSKCC	GRCh37	7	140494200	140494200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1213	100	936	0	ENST00000288602.6:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000288602	NM_004333.4	350	Gat/Aat																																																																														
NBN	0	MSKCC	GRCh37	8	90976662	90976662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1139	64	755	1	ENST00000265433.3:c.970G>A	p.Asp324Asn	p.D324N	ENST00000265433	NM_002485.4	324	Gat/Aat																																																																														
ATRX	0	MSKCC	GRCh37	X	76952064	76952064	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0021391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			930	67	648	0	ENST00000373344.5:c.370+1G>T		p.X124_splice	ENST00000373344	NM_000489.3	124																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	54	960	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	33	588	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	42	1062	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																																																														
CTCF	0	MSKCC	GRCh37	16	67654624	67654624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	102	788	0	ENST00000264010.4:c.1111C>T	p.Arg371Cys	p.R371C	ENST00000264010	NM_006565.3	371	Cgc/Tgc																																																																														
EGFR	0	MSKCC	GRCh37	7	55273029	55273029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			970	91	977	1	ENST00000275493.2:c.3352G>A	p.Ala1118Thr	p.A1118T	ENST00000275493	NM_005228.3	1118	Gcg/Acg																																																																														
KMT2C	0	MSKCC	GRCh37	7	151845814	151845814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	231	1069	0	ENST00000262189.6:c.13198C>T	p.Arg4400Trp	p.R4400W	ENST00000262189	NM_170606.2	4400	Cgg/Tgg																																																																														
TBX3	0	MSKCC	GRCh37	12	115114166	115114166	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	121	988	1	ENST00000257566.3:c.1051C>T	p.Gln351Ter	p.Q351*	ENST00000257566	NM_016569.3	351	Cag/Tag																																																																														
CBFB	0	MSKCC	GRCh37	16	67116106	67116120	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTCTGACAGCAGGA	ATTCTGACAGCAGGA	GTC			P-0021480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	60	557	3	ENST00000412916.2:c.400-10_404delinsGTC		p.X134_splice	ENST00000412916		134																																																																															
AXIN2	0	MSKCC	GRCh37	17	63533701	63533701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	285	562	1	ENST00000307078.5:c.1453G>A	p.Gly485Ser	p.G485S	ENST00000307078	NM_004655.3	485	Ggc/Agc																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	11627	816	1	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg																																																																														
ERBB4	0	MSKCC	GRCh37	2	212288969	212288969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148791072		P-0021363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	135	680	0	ENST00000342788.4:c.2777C>T	p.Thr926Met	p.T926M	ENST00000342788	NM_005235.2	926	aCg/aTg																																																																														
MITF	0	MSKCC	GRCh37	3	70014076	70014076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	141	606	0	ENST00000352241.4:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000352241	NM_198159.2	414	Cgg/Tgg																																																																														
APC	0	MSKCC	GRCh37	5	112175242	112175243	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATCCTGT			P-0021363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	101	260	0	ENST00000257430.4:c.3954_3961dup	p.Ser1321IlefsTer3	p.S1321Ifs*3	ENST00000257430	NM_000038.5	1317	-/GATCCTGT																																																																														
WHSC1L1	0	MSKCC	GRCh37	8	38148131	38148131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	2044	767	0	ENST00000317025.8:c.2980G>A	p.Asp994Asn	p.D994N	ENST00000317025	NM_023034.1	994	Gac/Aac																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015918-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			383	31	725	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
SOS1	0	MSKCC	GRCh37	2	39278343	39278343	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015918-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			444	25	978	0	ENST00000402219.2:c.806T>A	p.Met269Lys	p.M269K	ENST00000402219	NM_005633.3	269	aTg/aAg																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575152	48575152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015918-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	22	458	1	ENST00000342988.3:c.346C>G	p.Gln116Glu	p.Q116E	ENST00000342988	NM_005359.5	116	Cag/Gag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0021485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	109	1049	1	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																																																															
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0021406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	21	824	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0021406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	12	543	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			777	42	690	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																																																														
PTEN	0	MSKCC	GRCh37	10	89692961	89692961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	18	570	0	ENST00000371953.3:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000371953	NM_000314.4	149	Caa/Taa																																																																														
FLT1	0	MSKCC	GRCh37	13	28919595	28919595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	25	735	2	ENST00000282397.4:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000282397	NM_002019.4	781	cGa/cAa																																																																														
ARID1A	0	MSKCC	GRCh37	1	27023408	27023408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	38	627	0	ENST00000324856.7:c.514C>T	p.Gln172Ter	p.Q172*	ENST00000324856	NM_006015.4	172	Caa/Taa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	40	494	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	24	505	2	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																																																														
PTEN	0	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	103	610	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	92	768	0				ENST00000310581	NM_198253.2																																																																																
PAK7	0	MSKCC	GRCh37	20	9546931	9546931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	108	590	1	ENST00000353224.5:c.1091C>T	p.Ser364Leu	p.S364L	ENST00000353224	NM_177990.2	364	tCg/tTg																																																																														
ARID2	0	MSKCC	GRCh37	12	46245843	46245843	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	72	504	0	ENST00000334344.6:c.3937C>T	p.Gln1313Ter	p.Q1313*	ENST00000334344	NM_152641.2	1313	Caa/Taa																																																																														
AMER1	0	MSKCC	GRCh37	X	63412941	63412941	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	167	492	3	ENST00000330258.3:c.226G>T	p.Gly76Ter	p.G76*	ENST00000330258	NM_152424.3	76	Gga/Tga																																																																														
PTPRD	0	MSKCC	GRCh37	9	8341914	8341914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	76	731	0	ENST00000356435.5:c.4726G>A	p.Glu1576Lys	p.E1576K	ENST00000356435		1576	Gaa/Aaa																																																																														
AXL	0	MSKCC	GRCh37	19	41758315	41758315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	139	884	1	ENST00000301178.4:c.1771G>A	p.Glu591Lys	p.E591K	ENST00000301178	NM_021913.4	591	Gaa/Aaa																																																																														
NOTCH2	0	MSKCC	GRCh37	1	120468426	120468426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	106	641	2	ENST00000256646.2:c.4013C>T	p.Ser1338Phe	p.S1338F	ENST00000256646	NM_024408.3	1338	tCc/tTc																																																																														
MYOD1	0	MSKCC	GRCh37	11	17741580	17741580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	93	604	0	ENST00000250003.3:c.251C>T	p.Pro84Leu	p.P84L	ENST00000250003	NM_002478.4	84	cCc/cTc																																																																														
KMT2A	0	MSKCC	GRCh37	11	118376289	118376289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	99	701	1	ENST00000534358.1:c.9682C>T	p.Arg3228Cys	p.R3228C	ENST00000534358	NM_005933.3	3228	Cgt/Tgt																																																																														
TP53	0	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	115	675	0	ENST00000269305.4:c.358A>C	p.Lys120Gln	p.K120Q	ENST00000269305	NM_001126112.2	120	Aag/Cag																																																																														
NF1	0	MSKCC	GRCh37	17	29528097	29528097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	79	477	0	ENST00000358273.4:c.1105C>G	p.Gln369Glu	p.Q369E	ENST00000358273	NM_001042492.2	369	Cag/Gag																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602694	10602694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	147	1005	1	ENST00000171111.5:c.884C>T	p.Ser295Phe	p.S295F	ENST00000171111	NM_203500.1	295	tCc/tTc																																																																														
CALR	0	MSKCC	GRCh37	19	13051693	13051693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	104	636	0	ENST00000316448.5:c.952C>T	p.Leu318Phe	p.L318F	ENST00000316448	NM_004343.3	318	Ctc/Ttc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279980	18279980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	154	837	0	ENST00000222254.8:c.2063C>T	p.Ser688Leu	p.S688L	ENST00000222254	NM_005027.3	688	tCg/tTg																																																																														
NF2	0	MSKCC	GRCh37	22	30057270	30057270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	90	676	0	ENST00000338641.4:c.752C>T	p.Thr251Ile	p.T251I	ENST00000338641	NM_000268.3	251	aCc/aTc																																																																														
PRKCI	0	MSKCC	GRCh37	3	170002296	170002296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			140	28	157	1	ENST00000295797.4:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000295797	NM_002740.5	372	cGa/cAa																																																																														
RASA1	0	MSKCC	GRCh37	5	86564690	86564690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	105	762	0	ENST00000274376.6:c.422C>T	p.Pro141Leu	p.P141L	ENST00000274376	NM_002890.2	141	cCt/cTt																																																																														
NSD1	0	MSKCC	GRCh37	5	176631171	176631171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	102	662	0	ENST00000439151.2:c.1114C>T	p.Pro372Ser	p.P372S	ENST00000439151	NM_022455.4	372	Cct/Tct																																																																														
FLT4	0	MSKCC	GRCh37	5	180030199	180030199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	90	616	2	ENST00000261937.6:c.4085G>A	p.Ser1362Asn	p.S1362N	ENST00000261937	NM_182925.4	1362	aGc/aAc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32170129	32170129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	100	928	3	ENST00000375023.3:c.3479C>T	p.Ser1160Phe	p.S1160F	ENST00000375023	NM_004557.3	1160	tCc/tTc																																																																														
MET	0	MSKCC	GRCh37	7	116399471	116399471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	95	611	1	ENST00000397752.3:c.2291G>A	p.Gly764Glu	p.G764E	ENST00000397752	NM_000245.2	764	gGg/gAg																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0021411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	29	619	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																																																														
ERG	0	MSKCC	GRCh37	21	39775467	39775467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	10	768	3	ENST00000288319.7:c.553G>A	p.Ala185Thr	p.A185T	ENST00000288319	NM_182918.3	185	Gcc/Acc																																																																														
GATA3	0	MSKCC	GRCh37	10	8115733	8115734	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATCCAGA			P-0021411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	12	637	0	ENST00000346208.3:c.1081_1088dup	p.Arg364SerfsTer43	p.R364Sfs*43	ENST00000346208		360	ggc/ggCATCCAGAc																																																																														
EPHA7	0	MSKCC	GRCh37	6	93974394	93974394	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	35	624	0	ENST00000369303.4:c.1660C>A	p.Pro554Thr	p.P554T	ENST00000369303	NM_004440.3	554	Cct/Act																																																																														
KDM5C	0	MSKCC	GRCh37	X	53247541	53247541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	10	803	0	ENST00000375401.3:c.268G>T	p.Ala90Ser	p.A90S	ENST00000375401	NM_004187.3	90	Gcc/Tcc																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	353	721	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	169	740	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	99	501	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																																																														
MAP3K1	0	MSKCC	GRCh37	5	56160659	56160660	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGCGGGCCAGACT			P-0020540-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	88	463	0	ENST00000399503.3:c.934_947dup	p.Tyr317CysfsTer11	p.Y317Cfs*11	ENST00000399503	NM_005921.1	311	-/ATGCGGGCCAGACT																																																																														
PIK3CD	0	MSKCC	GRCh37	1	9780828	9780828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	210	823	2	ENST00000377346.4:c.1550G>A	p.Arg517Gln	p.R517Q	ENST00000377346	NM_005026.3	517	cGg/cAg																																																																														
TP53	0	MSKCC	GRCh37	17	7579319	7579348	+	inframe_deletion	In_Frame_Del	DEL	GTCACAGACTTGGCTGTCCCAGAATGCAAG	GTCACAGACTTGGCTGTCCCAGAATGCAAG	-			P-0021381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	446	638	2	ENST00000269305.4:c.339_368del	p.Leu114_Thr123del	p.L114_T123del	ENST00000269305	NM_001126112.2	113	ttCTTGCATTCTGGGACAGCCAAGTCTGTGACt/ttt																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732966	74732966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021381-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	58	345	0	ENST00000359995.5:c.277G>C	p.Gly93Arg	p.G93R	ENST00000359995	NM_001195427.1	93	Ggc/Cgc																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0017920-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			495	492	768	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0017920-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	240	726	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																																																														
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0017920-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			186	134	313	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																																																														
SRSF2	0	MSKCC	GRCh37	17	74732511	74732511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0019401-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			117	66	242	0	ENST00000359995.5:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000359995	NM_001195427.1	133	cGg/cAg																																																																														
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	162	458	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	115	439	0				ENST00000310581	NM_198253.2																																																																																
ERBB2	0	MSKCC	GRCh37	17	37868193	37868193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	287	732	0	ENST00000269571.5:c.914C>G	p.Ser305Cys	p.S305C	ENST00000269571		305	tCt/tGt																																																																														
PTPRD	0	MSKCC	GRCh37	9	8507340	8507340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	117	565	1	ENST00000356435.5:c.1638C>A	p.Asn546Lys	p.N546K	ENST00000356435		546	aaC/aaA																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088653	27088653	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	55	885	0	ENST00000324856.7:c.2262G>C	p.Gln754His	p.Q754H	ENST00000324856	NM_006015.4	754	caG/caC																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088728	27088729	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	60	807	0	ENST00000324856.7:c.2338_2339del	p.Gln780AspfsTer36	p.Q780Dfs*36	ENST00000324856	NM_006015.4	779	ggACag/ggag																																																																														
FGF3	0	MSKCC	GRCh37	11	69625117	69625117	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	212	867	0	ENST00000334134.2:c.676C>T	p.Gln226Ter	p.Q226*	ENST00000334134	NM_005247.2	226	Cag/Tag																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18716425	18716425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	122	461	0	ENST00000266497.5:c.3772C>G	p.Leu1258Val	p.L1258V	ENST00000266497		1258	Ctc/Gtc																																																																														
PLCG2	0	MSKCC	GRCh37	16	81922789	81922789	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	144	425	1	ENST00000359376.3:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000359376	NM_002661.3	260	Cag/Tag																																																																														
TP53	0	MSKCC	GRCh37	17	7579521	7579521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	119	910	1	ENST00000269305.4:c.166G>A	p.Glu56Lys	p.E56K	ENST00000269305	NM_001126112.2	56	Gaa/Aaa																																																																														
TP53	0	MSKCC	GRCh37	17	7579545	7579545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	105	860	1	ENST00000269305.4:c.142G>A	p.Asp48Asn	p.D48N	ENST00000269305	NM_001126112.2	48	Gac/Aac																																																																														
NCOR1	0	MSKCC	GRCh37	17	16004574	16004574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	228	420	0	ENST00000268712.3:c.2680G>A	p.Glu894Lys	p.E894K	ENST00000268712	NM_006311.3	894	Gag/Aag																																																																														
DOT1L	0	MSKCC	GRCh37	19	2213965	2213965	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200802307		P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	216	775	0	ENST00000398665.3:c.1777C>T	p.Arg593Cys	p.R593C	ENST00000398665	NM_032482.2	593	Cgc/Tgc																																																																														
DOT1L	0	MSKCC	GRCh37	19	2222026	2222026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	59	934	2	ENST00000398665.3:c.2858C>T	p.Pro953Leu	p.P953L	ENST00000398665	NM_032482.2	953	cCg/cTg																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281566	15281566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	64	1015	1	ENST00000263388.2:c.4807G>T	p.Asp1603Tyr	p.D1603Y	ENST00000263388	NM_000435.2	1603	Gat/Tat																																																																														
ERBB4	0	MSKCC	GRCh37	2	212495208	212495208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	130	724	0	ENST00000342788.4:c.2058G>C	p.Leu686Phe	p.L686F	ENST00000342788	NM_005235.2	686	ttG/ttC																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45656866	45656866	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	209	670	0	ENST00000407780.3:c.290C>G	p.Ser97Cys	p.S97C	ENST00000407780	NM_001283052.1	97	tCc/tGc																																																																														
FBXW7	0	MSKCC	GRCh37	4	153244167	153244167	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	239	694	0	ENST00000281708.4:c.1990G>T	p.Glu664Ter	p.E664*	ENST00000281708	NM_033632.3	664	Gag/Tag																																																																														
APC	0	MSKCC	GRCh37	5	112178268	112178268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	129	472	1	ENST00000257430.4:c.6977G>A	p.Arg2326Gln	p.R2326Q	ENST00000257430	NM_000038.5	2326	cGa/cAa																																																																														
VEGFA	0	MSKCC	GRCh37	6	43748574	43748574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	159	488	0	ENST00000523873.1:c.528G>C	p.Trp176Cys	p.W176C	ENST00000523873		176	tgG/tgC																																																																														
ARID1B	0	MSKCC	GRCh37	6	157525095	157525095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	110	328	0	ENST00000346085.5:c.4990G>A	p.Asp1664Asn	p.D1664N	ENST00000346085	NM_020732.3	1664	Gat/Aat																																																																														
PTPRD	0	MSKCC	GRCh37	9	8484129	8484129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	157	513	0	ENST00000356435.5:c.3403G>C	p.Glu1135Gln	p.E1135Q	ENST00000356435		1135	Gag/Cag																																																																														
BTK	0	MSKCC	GRCh37	X	100608969	100608969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	196	315	0	ENST00000308731.7:c.1639C>A	p.Leu547Met	p.L547M	ENST00000308731	NM_000061.2	547	Ctg/Atg																																																																														
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	312	1119	1	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0021438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	117	733	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																																																														
INSR	0	MSKCC	GRCh37	19	7141776	7141776	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	217	946	1	ENST00000302850.5:c.2594A>G	p.Asn865Ser	p.N865S	ENST00000302850	NM_000208.2	865	aAc/aGc																																																																														
ALK	0	MSKCC	GRCh37	2	29541192	29541192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	45	832	0	ENST00000389048.3:c.1625C>G	p.Pro542Arg	p.P542R	ENST00000389048	NM_004304.4	542	cCg/cGg																																																																														
MED12	0	MSKCC	GRCh37	X	70344938	70344938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021438-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	185	973	0	ENST00000374080.3:c.2168G>A	p.Gly723Glu	p.G723E	ENST00000374080		723	gGg/gAg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	100	879	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0021376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	75	672	2	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																																																														
PIK3R1	0	MSKCC	GRCh37	5	67591132	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0021376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	38	425	0	ENST00000274335.5:c.1727_1729delCGA	p.Thr576del	p.T576del	ENST00000274335		575	aaGACg/aag																																																																														
ARID1A	0	MSKCC	GRCh37	1	27100827	27100849	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGGCCAATGGATGGCACATAT	AGCGGCCAATGGATGGCACATAT	CGC			P-0021376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	139	734	3	ENST00000324856.7:c.4109_4131delinsCGC	p.Lys1370ThrfsTer68	p.K1370Tfs*68	ENST00000324856	NM_006015.4	1370	aAGCGGCCAATGGATGGCACATAT/aCGC																																																																														
PTEN	0	MSKCC	GRCh37	10	89717705	89717706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	90	678	0	ENST00000371953.3:c.730_731insA	p.Pro244HisfsTer9	p.P244Hfs*9	ENST00000371953	NM_000314.4	244	cct/cAct																																																																														
CCND1	0	MSKCC	GRCh37	11	69466000	69466000	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	138	1111	1	ENST00000227507.2:c.838G>T	p.Glu280Ter	p.E280*	ENST00000227507	NM_053056.2	280	Gag/Tag																																																																														
EP300	0	MSKCC	GRCh37	22	41572967	41572967	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	123	937	0	ENST00000263253.7:c.5252C>G	p.Ala1751Gly	p.A1751G	ENST00000263253	NM_001429.3	1751	gCc/gGc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916875	178916875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	19	944	0	ENST00000263967.3:c.262C>G	p.Arg88Gly	p.R88G	ENST00000263967	NM_006218.2	88	Cga/Gga																																																																														
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	22	715	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0021285-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	150	528	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																																																														
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	63	426	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																																																														
MGA	0	MSKCC	GRCh37	15	41961332	41961332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	16	526	0	ENST00000219905.7:c.240del	p.Asp80GlufsTer16	p.D80Efs*16	ENST00000219905	NM_001164273.1	80	gaT/ga																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15281193	15281193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021282-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	68	1183	0	ENST00000263388.2:c.5063C>G	p.Ser1688Cys	p.S1688C	ENST00000263388	NM_000435.2	1688	tCt/tGt																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	229	523	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
KMT2C	0	MSKCC	GRCh37	7	152012359	152012359	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	123	667	0	ENST00000262189.6:c.454C>T	p.Gln152Ter	p.Q152*	ENST00000262189	NM_170606.2	152	Caa/Taa																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139399444	139399444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021103-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	312	1060	4	ENST00000277541.6:c.4699G>A	p.Glu1567Lys	p.E1567K	ENST00000277541	NM_017617.3	1567	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	80	813	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	60	891	3	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																																																														
ARID2	0	MSKCC	GRCh37	12	46285796	46285796	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0021347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	70	471	0	ENST00000334344.6:c.5064del	p.Asp1688GlufsTer13	p.D1688Efs*13	ENST00000334344	NM_152641.2	1688	gaT/ga																																																																														
TP53	0	MSKCC	GRCh37	17	7578471	7578482	+	inframe_deletion	In_Frame_Del	DEL	GGGCGGGGGTGT	GGGCGGGGGTGT	-			P-0021347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	151	937	2	ENST00000269305.4:c.448_459del	p.Thr150_Pro153del	p.T150_P153del	ENST00000269305	NM_001126112.2	150	ACACCCCCGCCC/-																																																																														
TET2	0	MSKCC	GRCh37	4	106193800	106193800	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021347-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	46	479	0	ENST00000380013.4:c.4262A>G	p.Tyr1421Cys	p.Y1421C	ENST00000380013	NM_001127208.2	1421	tAc/tGc																																																																														
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	44	1121	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																																																														
NOTCH3	0	MSKCC	GRCh37	19	15272198	15272198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	41	885	0	ENST00000263388.2:c.6241G>A	p.Gly2081Ser	p.G2081S	ENST00000263388	NM_000435.2	2081	Ggc/Agc																																																																														
BCOR	0	MSKCC	GRCh37	X	39923582	39923603	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTCACCTTTAGAGACTCGTC	GGCTCACCTTTAGAGACTCGTC	-			P-0021107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	20	998	0	ENST00000378444.4:c.3488_3502+7del		p.X1163_splice	ENST00000378444	NM_001123385.1	1163																																																																															
AR	0	MSKCC	GRCh37	X	66766484	66766484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021107-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	43	1029	0	ENST00000374690.3:c.1496C>A	p.Ala499Glu	p.A499E	ENST00000374690	NM_000044.3	499	gCa/gAa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0021443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	21	835	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604835	48604835	+	stop_lost	Nonstop_Mutation	SNP	T	T	A			P-0021443-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	26	360	1	ENST00000342988.3:c.1657T>A	p.Ter553ArgextTer40	p.*553Rext*40	ENST00000342988	NM_005359.5	553	Tga/Aga																																																																														
GNAS	0	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	116	616	1	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																																																														
TMPRSS2	0	MSKCC	GRCh37	21	42843761	42843761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021183-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	37	1039	1	ENST00000398585.3:c.1158G>A	p.Met386Ile	p.M386I	ENST00000398585	NM_001135099.1	386	atG/atA																																																																														
SPOP	0	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	116	792	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139413973	139413973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021386-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	197	1008	0	ENST00000277541.6:c.787G>C	p.Gly263Arg	p.G263R	ENST00000277541	NM_017617.3	263	Gga/Cga																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	274	799	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
PTPRT	0	MSKCC	GRCh37	20	40944592	40944592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	187	592	0	ENST00000373198.4:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000373198	NM_133170.3	637	cGg/cAg																																																																														
KMT2D	0	MSKCC	GRCh37	12	49448157	49448157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	191	835	0	ENST00000301067.7:c.443G>T	p.Gly148Val	p.G148V	ENST00000301067	NM_003482.3	148	gGc/gTc																																																																														
TP53	0	MSKCC	GRCh37	17	7577608	7577609	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	CC	CC	-			P-0021350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	192	693	0	ENST00000269305.4:c.673-1_673del		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
SMAD4	0	MSKCC	GRCh37	18	48581272	48581273	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0021350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	54	730	1	ENST00000342988.3:c.579_580del	p.Glu193AspfsTer12	p.E193Dfs*12	ENST00000342988	NM_005359.5	192	acAGag/acag																																																																														
SETD2	0	MSKCC	GRCh37	3	47127702	47127702	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021350-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	142	667	0	ENST00000409792.3:c.5380C>T	p.Gln1794Ter	p.Q1794*	ENST00000409792	NM_014159.6	1794	Cag/Tag																																																																														
MAP2K1	0	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	39	685	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																																																														
LATS2	0	MSKCC	GRCh37	13	21619923	21619923	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	49	940	0	ENST00000382592.4:c.243A>C	p.Arg81Ser	p.R81S	ENST00000382592	NM_014572.2	81	agA/agC																																																																														
IRS2	0	MSKCC	GRCh37	13	110435403	110435403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	54	1147	3	ENST00000375856.3:c.2998G>A	p.Gly1000Ser	p.G1000S	ENST00000375856	NM_003749.2	1000	Ggc/Agc																																																																														
STK11	0	MSKCC	GRCh37	19	1221334	1221334	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	41	919	0	ENST00000326873.7:c.857T>C	p.Leu286Pro	p.L286P	ENST00000326873	NM_000455.4	286	cTg/cCg																																																																														
RAF1	0	MSKCC	GRCh37	3	12645684	12645684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021324-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	26	339	0	ENST00000251849.4:c.785A>G	p.Asn262Ser	p.N262S	ENST00000251849	NM_002880.3	262	aAt/aGt																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	392	760	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	604	1043	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																																																														
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021341-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	423	900	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	228	753	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0021273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	228	959	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
SMAD4	0	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	162	679	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	154	530	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7576900	7576901	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	635	833	0	ENST00000269305.4:c.945_946del	p.Gln317AlafsTer19	p.Q317Afs*19	ENST00000269305	NM_001126112.2	315	tcTCcc/tccc																																																																														
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	179	515	1	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc																																																																														
KDM5A	0	MSKCC	GRCh37	12	438183	438183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	135	406	0	ENST00000399788.2:c.1786C>T	p.Arg596Cys	p.R596C	ENST00000399788	NM_001042603.1	596	Cgt/Tgt																																																																														
ATM	0	MSKCC	GRCh37	11	108170608	108170608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	100	433	0	ENST00000278616.4:c.5173G>T	p.Asp1725Tyr	p.D1725Y	ENST00000278616	NM_000051.3	1725	Gat/Tat																																																																														
RECQL	0	MSKCC	GRCh37	12	21636390	21636390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	235	937	1	ENST00000421138.2:c.620C>A	p.Ala207Asp	p.A207D	ENST00000421138		207	gCc/gAc																																																																														
CD276	0	MSKCC	GRCh37	15	73996231	73996231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	147	393	1	ENST00000318443.5:c.965A>G	p.Asn322Ser	p.N322S	ENST00000318443	NM_001024736.1	322	aAt/aGt																																																																														
IGF1R	0	MSKCC	GRCh37	15	99440093	99440093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	423	690	0	ENST00000268035.6:c.1061C>T	p.Thr354Ile	p.T354I	ENST00000268035	NM_000875.3	354	aCc/aTc																																																																														
IGF1R	0	MSKCC	GRCh37	15	99486150	99486150	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	181	488	0	ENST00000268035.6:c.3458-2A>G		p.X1153_splice	ENST00000268035	NM_000875.3	1153																																																																															
ALOX12B	0	MSKCC	GRCh37	17	7979992	7979992	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	338	777	0	ENST00000319144.4:c.1345G>C	p.Gly449Arg	p.G449R	ENST00000319144	NM_001139.2	449	Ggg/Cgg																																																																														
RNF43	0	MSKCC	GRCh37	17	56448315	56448426	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTCCAGCTTGACGATGCTGATGAATCCAGGCTCCAGATTGTCGTCATCACTGGCATTGCACAGGTACAGCGGGTGGGACTGCAGAGAGAGACAGACTTGGGTTAGGGAGG	CTCTCCAGCTTGACGATGCTGATGAATCCAGGCTCCAGATTGTCGTCATCACTGGCATTGCACAGGTACAGCGGGTGGGACTGCAGAGAGAGACAGACTTGGGTTAGGGAGG	-			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	143	888	0	ENST00000407977.2:c.253-32_332del		p.X85_splice	ENST00000407977		85																																																																															
PTPRS	0	MSKCC	GRCh37	19	5212439	5212439	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150241840		P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	416	931	3	ENST00000357368.4:c.4678G>A	p.Val1560Met	p.V1560M	ENST00000357368	NM_002850.3	1560	Gtg/Atg																																																																														
CASP8	0	MSKCC	GRCh37	2	202123022	202123022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	148	607	0	ENST00000358485.4:c.68C>T	p.Pro23Leu	p.P23L	ENST00000358485	NM_001080125.1	23	cCc/cTc																																																																														
ICOSLG	0	MSKCC	GRCh37	21	45657031	45657031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	270	638	0	ENST00000407780.3:c.125G>A	p.Gly42Glu	p.G42E	ENST00000407780	NM_001283052.1	42	gGa/gAa																																																																														
ARID1B	0	MSKCC	GRCh37	6	157505404	157505406	+	frameshift_variant	Frame_Shift_Del	DEL	CTA	CTA	TT			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	179	556	1	ENST00000346085.5:c.3385_3387delinsTT	p.Asn1130ThrfsTer12	p.N1130Tfs*12	ENST00000346085	NM_020732.3	1129	CTA/TT																																																																														
SOX17	0	MSKCC	GRCh37	8	55370889	55370917	+	frameshift_variant	Frame_Shift_Del	DEL	GCGAGTCCCGTATCCGGCGGCCGATGAAC	GCGAGTCCCGTATCCGGCGGCCGATGAAC	-			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	309	768	0	ENST00000297316.4:c.193_221del	p.Glu65PhefsTer6	p.E65Ffs*6	ENST00000297316	NM_022454.3	64	gGCGAGTCCCGTATCCGGCGGCCGATGAAC/g																																																																														
SOX17	0	MSKCC	GRCh37	8	55371656	55372034	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTTCGTGGAGGAGGCAGAGCGGCTGCGCGTGCAGCACATGCAGGACCACCCCAACTACAAGTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGGCTGAAGCGGGTGGAGGGCGGCTTCCTGCACGGCCTGGCTGAGCCGCAGGCGGCCGCGCTGGGCCCCGAGGGCGGCCGCGTGGCCATGGACGGCCTGGGCCTCCAGTTCCCCGAGCAGGGCTTCCCCGCCGGCCCGCCGCTGCTGCCTCCGCACATGGGCGGCCACTACCGCGACTGCCAGAGTCTGGGCGCGCCTCCGCTCGACGGCTACCCGTTGCCCACGCCCGACACGTCCCCGCTGGACGGCGTGGACCCCGACCCGGCTTTCTTCGCCGCCCCGATGC	CCCTTCGTGGAGGAGGCAGAGCGGCTGCGCGTGCAGCACATGCAGGACCACCCCAACTACAAGTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGGCTGAAGCGGGTGGAGGGCGGCTTCCTGCACGGCCTGGCTGAGCCGCAGGCGGCCGCGCTGGGCCCCGAGGGCGGCCGCGTGGCCATGGACGGCCTGGGCCTCCAGTTCCCCGAGCAGGGCTTCCCCGCCGGCCCGCCGCTGCTGCCTCCGCACATGGGCGGCCACTACCGCGACTGCCAGAGTCTGGGCGCGCCTCCGCTCGACGGCTACCCGTTGCCCACGCCCGACACGTCCCCGCTGGACGGCGTGGACCCCGACCCGGCTTTCTTCGCCGCCCCGATGC	-			P-0021290-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	286	903	0	ENST00000297316.4:c.348_726del	p.Phe117GlyfsTer144	p.F117Gfs*144	ENST00000297316	NM_022454.3	116	CCCTTCGTGGAGGAGGCAGAGCGGCTGCGCGTGCAGCACATGCAGGACCACCCCAACTACAAGTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGGCTGAAGCGGGTGGAGGGCGGCTTCCTGCACGGCCTGGCTGAGCCGCAGGCGGCCGCGCTGGGCCCCGAGGGCGGCCGCGTGGCCATGGACGGCCTGGGCCTCCAGTTCCCCGAGCAGGGCTTCCCCGCCGGCCCGCCGCTGCTGCCTCCGCACATGGGCGGCCACTACCGCGACTGCCAGAGTCTGGGCGCGCCTCCGCTCGACGGCTACCCGTTGCCCACGCCCGACACGTCCCCGCTGGACGGCGTGGACCCCGACCCGGCTTTCTTCGCCGCCCCGATGCcc/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	145	818	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0021196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	8	509	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																																																														
EPHA3	0	MSKCC	GRCh37	3	89498465	89498465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	51	595	1	ENST00000336596.2:c.2437G>T	p.Val813Phe	p.V813F	ENST00000336596	NM_005233.5	813	Gtt/Ttt																																																																														
EGFR	0	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TCC			P-0021196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	327	690	1	ENST00000275493.2:c.2303_2305delinsTCC	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTCCtg																																																																														
DIS3	0	MSKCC	GRCh37	13	73355961	73355961	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	165	923	0	ENST00000377767.4:c.10T>G	p.Ser4Ala	p.S4A	ENST00000377767	NM_014953.3	4	Tcc/Gcc																																																																														
PIK3R2	0	MSKCC	GRCh37	19	18279352	18279352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	68	744	1	ENST00000222254.8:c.1804G>A	p.Glu602Lys	p.E602K	ENST00000222254	NM_005027.3	602	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	49	781	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0021373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	48	539	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0021373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	48	539	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																																																														
TP53	0	MSKCC	GRCh37	17	7579394	7579394	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	56	910	0	ENST00000269305.4:c.293del	p.Pro98LeufsTer25	p.P98Lfs*25	ENST00000269305	NM_001126112.2	98	cCt/ct																																																																														
PIK3C3	0	MSKCC	GRCh37	18	39637974	39637974	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	56	826	0	ENST00000262039.4:c.2391G>C	p.Glu797Asp	p.E797D	ENST00000262039	NM_002647.2	797	gaG/gaC																																																																														
SMAD4	0	MSKCC	GRCh37	18	48604626	48604629	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GTCT	GTCT	-			P-0021373-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	18	318	0	ENST00000342988.3:c.1451_1454del	p.Leu484GlnfsTer19	p.L484Qfs*19	ENST00000342988	NM_005359.5	483	aGTCTg/ag																																																																														
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0021328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	385	890	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																																																														
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0021328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	192	725	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	31	406	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																																																														
MSI1	0	MSKCC	GRCh37	12	120802531	120802531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	152	829	0	ENST00000257552.2:c.295C>G	p.Arg99Gly	p.R99G	ENST00000257552	NM_002442.3	99	Cga/Gga																																																																														
ERCC5	0	MSKCC	GRCh37	13	103519187	103519187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	54	612	0	ENST00000355739.4:c.2525A>G	p.Asn842Ser	p.N842S	ENST00000355739	NM_000123.3	842	aAt/aGt																																																																														
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021192-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	198	752	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa																																																																														
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	266	1076	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																																																														
GATA3	0	MSKCC	GRCh37	10	8115947	8115948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	118	645	0	ENST00000346208.3:c.1295dup	p.His433ThrfsTer74	p.H433Tfs*74	ENST00000346208		431	-/C																																																																														
EPHB1	0	MSKCC	GRCh37	3	134968189	134968189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	200	879	0	ENST00000398015.3:c.2702C>A	p.Pro901His	p.P901H	ENST00000398015	NM_004441.4	901	cCc/cAc																																																																														
PDGFRA	0	MSKCC	GRCh37	4	55133480	55133480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021178-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	117	812	0	ENST00000257290.5:c.784G>T	p.Glu262Ter	p.E262*	ENST00000257290	NM_006206.4	262	Gaa/Taa																																																																														
RICTOR	0	MSKCC	GRCh37	5	39074231	39074231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	110	714	1	ENST00000357387.3:c.79C>T	p.Pro27Ser	p.P27S	ENST00000357387	NM_152756.3	27	Ccg/Tcg																																																																														
RNF43	0	MSKCC	GRCh37	17	56437578	56437578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021104-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	132	819	0	ENST00000407977.2:c.884A>G	p.His295Arg	p.H295R	ENST00000407977		295	cAt/cGt																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	26	358	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																																																														
EP300	0	MSKCC	GRCh37	22	41566442	41566442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021288-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	193	515	0	ENST00000263253.7:c.4319C>T	p.Pro1440Leu	p.P1440L	ENST00000263253	NM_001429.3	1440	cCa/cTa																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	179	687	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
MAP2K4	0	MSKCC	GRCh37	17	12011152	12011152	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	168	599	1	ENST00000353533.5:c.559A>T	p.Lys187Ter	p.K187*	ENST00000353533	NM_003010.3	187	Aag/Tag																																																																														
NCOR1	0	MSKCC	GRCh37	17	15974793	15974794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	168	546	0	ENST00000268712.3:c.4081dup	p.Thr1361AsnfsTer19	p.T1361Nfs*19	ENST00000268712	NM_006311.3	1361	act/aAct																																																																														
SRC	0	MSKCC	GRCh37	20	36012737	36012747	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAAGCTGTT	CCCAAGCTGTT	-			P-0021437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	40	318	0	ENST00000358208.4:c.182_192del	p.Pro61ArgfsTer30	p.P61Rfs*30	ENST00000358208		61	CCCAAGCTGTTc/c																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	30	412	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	647	818	1	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																																																														
ESR1	0	MSKCC	GRCh37	6	152265627	152265627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	265	377	0	ENST00000206249.3:c.1080G>T	p.Trp360Cys	p.W360C	ENST00000206249	NM_000125.3	360	tgG/tgT																																																																														
CBL	0	MSKCC	GRCh37	11	119144684	119144684	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	222	584	0	ENST00000264033.4:c.697A>C	p.Asn233His	p.N233H	ENST00000264033	NM_005188.3	233	Aat/Cat																																																																														
DIS3	0	MSKCC	GRCh37	13	73346331	73346331	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	145	542	0	ENST00000377767.4:c.1469T>G	p.Leu490Arg	p.L490R	ENST00000377767	NM_014953.3	490	cTa/cGa																																																																														
FOXA1	0	MSKCC	GRCh37	14	38060916	38060916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	445	570	2	ENST00000250448.2:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000250448	NM_004496.3	358	cCc/cTc																																																																														
ZFHX3	0	MSKCC	GRCh37	16	72993573	72993573	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	246	577	0	ENST00000268489.5:c.472G>T	p.Gly158Trp	p.G158W	ENST00000268489	NM_006885.3	158	Ggg/Tgg																																																																														
TP53	0	MSKCC	GRCh37	17	7577117	7577137	+	inframe_deletion	In_Frame_Del	DEL	ACACGCACCTCAAAGCTGTTC	ACACGCACCTCAAAGCTGTTC	-			P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	257	788	0	ENST00000269305.4:c.801_821del	p.Asn268_Val274del	p.N268_V274del	ENST00000269305	NM_001126112.2	267	cgGAACAGCTTTGAGGTGCGTGTt/cgt																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610396	10610397	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	590	851	3	ENST00000171111.5:c.313_314delinsTT	p.Pro105Phe	p.P105F	ENST00000171111	NM_203500.1	105	CCt/TTt																																																																														
TGFBR2	0	MSKCC	GRCh37	3	30713520	30713520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	379	521	0	ENST00000359013.4:c.920A>G	p.Glu307Gly	p.E307G	ENST00000359013	NM_001024847.2	307	gAg/gGg																																																																														
FAM175A	0	MSKCC	GRCh37	4	84393419	84393419	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	220	451	0	ENST00000321945.7:c.238G>C	p.Val80Leu	p.V80L	ENST00000321945	NM_139076.2	80	Gta/Cta																																																																														
NSD1	0	MSKCC	GRCh37	5	176696730	176696730	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	371	483	0	ENST00000439151.2:c.5431C>G	p.Arg1811Gly	p.R1811G	ENST00000439151	NM_022455.4	1811	Cga/Gga																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32191704	32191704	+	start_lost	Translation_Start_Site	SNP	A	A	C			P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	471	829	0	ENST00000375023.3:c.2T>G	p.Met1?	p.M1?	ENST00000375023	NM_004557.3	1	aTg/aGg																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499774	8499774	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021166-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	279	634	0	ENST00000356435.5:c.2195G>A	p.Trp732Ter	p.W732*	ENST00000356435		732	tGg/tAg																																																																														
STK11	0	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	521	769	0	ENST00000326873.7:c.598-2A>G		p.X200_splice	ENST00000326873	NM_000455.4	200																																																																															
RIT1	0	MSKCC	GRCh37	1	155874286	155874286	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	808	593	0	ENST00000368323.3:c.245T>G	p.Phe82Cys	p.F82C	ENST00000368323	NM_006912.5	82	tTt/tGt																																																																														
AKT3	0	MSKCC	GRCh37	1	243668583	243668583	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	369	641	0	ENST00000263826.5:c.1408C>T	p.Gln470Ter	p.Q470*	ENST00000263826	NM_005465.4	470	Caa/Taa																																																																														
PTEN	0	MSKCC	GRCh37	10	89624268	89624268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	330	497	1	ENST00000371953.3:c.42G>T	p.Arg14Ser	p.R14S	ENST00000371953	NM_000314.4	14	agG/agT																																																																														
ATM	0	MSKCC	GRCh37	11	108119752	108119752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	125	335	0	ENST00000278616.4:c.1158G>T	p.Arg386Ser	p.R386S	ENST00000278616	NM_000051.3	386	agG/agT																																																																														
CBL	0	MSKCC	GRCh37	11	119077161	119077161	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	250	641	0	ENST00000264033.4:c.34G>T	p.Gly12Trp	p.G12W	ENST00000264033	NM_005188.3	12	Ggg/Tgg																																																																														
KEAP1	0	MSKCC	GRCh37	19	10610523	10610523	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	605	884	0	ENST00000171111.5:c.187del	p.Ala63ProfsTer5	p.A63Pfs*5	ENST00000171111	NM_203500.1	63	Gcc/cc																																																																														
EP300	0	MSKCC	GRCh37	22	41513326	41513326	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	238	723	1	ENST00000263253.7:c.230A>T	p.Lys77Ile	p.K77I	ENST00000263253	NM_001429.3	77	aAa/aTa																																																																														
SETD2	0	MSKCC	GRCh37	3	47061306	47061306	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	346	591	1	ENST00000409792.3:c.7375G>T	p.Glu2459Ter	p.E2459*	ENST00000409792	NM_014159.6	2459	Gaa/Taa																																																																														
FAT1	0	MSKCC	GRCh37	4	187519270	187519270	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	198	606	1	ENST00000441802.2:c.12113G>T	p.Cys4038Phe	p.C4038F	ENST00000441802	NM_005245.3	4038	tGc/tTc																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149513565	149513565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	227	639	0	ENST00000261799.4:c.638C>T	p.Ser213Phe	p.S213F	ENST00000261799	NM_002609.3	213	tCc/tTc																																																																														
AMER1	0	MSKCC	GRCh37	X	63412937	63412937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021442-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	343	974	0	ENST00000330258.3:c.230G>C	p.Arg77Pro	p.R77P	ENST00000330258	NM_152424.3	77	cGg/cCg																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	157	702	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	137	705	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
KMT2C	0	MSKCC	GRCh37	7	151846106	151846106	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021199-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	128	622	0	ENST00000262189.6:c.12906del	p.Ala4303ProfsTer23	p.A4303Pfs*23	ENST00000262189	NM_170606.2	4302	ccT/cc																																																																														
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	246	520	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89692922	89692922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	165	595	0	ENST00000371953.3:c.406T>C	p.Cys136Arg	p.C136R	ENST00000371953	NM_000314.4	136	Tgt/Cgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	107	394	1	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952052	178952052	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	104	492	0	ENST00000263967.3:c.3107T>C	p.Leu1036Ser	p.L1036S	ENST00000263967	NM_006218.2	1036	tTg/tCg																																																																														
INPPL1	0	MSKCC	GRCh37	11	71945331	71945331	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	58	802	0	ENST00000298229.2:c.2219C>G	p.Ser740Ter	p.S740*	ENST00000298229	NM_001567.3	740	tCa/tGa																																																																														
MAP2K4	0	MSKCC	GRCh37	17	11984734	11984735	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	130	303	1	ENST00000353533.5:c.281dup	p.His94GlnfsTer38	p.H94Qfs*38	ENST00000353533	NM_003010.3	94	cac/cAac																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952064	178952064	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	95	465	0	ENST00000263967.3:c.3119T>C	p.Met1040Thr	p.M1040T	ENST00000263967	NM_006218.2	1040	aTg/aCg																																																																														
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0021383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	496	661	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225																																																																															
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	344	1048	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0021111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	298	864	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																																																														
DIS3	0	MSKCC	GRCh37	13	73342984	73342989	+	inframe_deletion	In_Frame_Del	DEL	TGGTAA	TGGTAA	-			P-0021111-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			56	239	641	0	ENST00000377767.4:c.1817_1822del	p.Ile606_Thr607del	p.I606_T607del	ENST00000377767	NM_014953.3	606	aTTACCAct/act																																																																														
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	229	965	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178916924	178916926	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0021374-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	602	763	0	ENST00000263967.3:c.311_313del	p.Pro104_Val105delinsLeu	p.P104_V105delinsL	ENST00000263967	NM_006218.2	104	cCAGta/cta																																																																														
JAK1	0	MSKCC	GRCh37	1	65303790	65303790	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	85	386	1	ENST00000342505.4:c.2968-3C>T		p.X990_splice	ENST00000342505	NM_002227.2	990																																																																															
GLI1	0	MSKCC	GRCh37	12	57864118	57864118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200306754		P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	192	691	0	ENST00000228682.2:c.1595G>A	p.Arg532His	p.R532H	ENST00000228682	NM_005269.2	532	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	640	762	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																																																														
YES1	0	MSKCC	GRCh37	18	732902	732902	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	271	747	1	ENST00000314574.4:c.1355del	p.Lys452SerfsTer14	p.K452Sfs*14	ENST00000314574	NM_005433.3	452	aAg/ag																																																																														
DROSHA	0	MSKCC	GRCh37	5	31504729	31504729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	709	684	2	ENST00000344624.3:c.1601C>T	p.Pro534Leu	p.P534L	ENST00000344624		534	cCa/cTa																																																																														
PDGFRB	0	MSKCC	GRCh37	5	149497196	149497196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	110	571	1	ENST00000261799.4:c.3122C>A	p.Ser1041Tyr	p.S1041Y	ENST00000261799	NM_002609.3	1041	tCc/tAc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	979	653	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
BCOR	0	MSKCC	GRCh37	X	39921606	39921606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	136	362	0	ENST00000378444.4:c.4214C>T	p.Ser1405Leu	p.S1405L	ENST00000378444	NM_001123385.1	1405	tCg/tTg																																																																														
STAG2	0	MSKCC	GRCh37	X	123227950	123227950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021270-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	125	310	0	ENST00000218089.9:c.3661G>T	p.Asp1221Tyr	p.D1221Y	ENST00000218089	NM_001042749.1	1221	Gat/Tat																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9857896	9857896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	577	719	1	ENST00000330684.3:c.3505C>T	p.Arg1169Trp	p.R1169W	ENST00000330684	NM_001134407.1	1169	Cgg/Tgg																																																																														
ATM	0	MSKCC	GRCh37	11	108098601	108098601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	216	384	0	ENST00000278616.4:c.171G>T	p.Trp57Cys	p.W57C	ENST00000278616	NM_000051.3	57	tgG/tgT																																																																														
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	32	760	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	156	416	1				ENST00000310581	NM_198253.2																																																																																
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0021378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	128	630	12	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																																																														
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	254	946	6	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																																																														
SPEN	0	MSKCC	GRCh37	1	16260516	16260517	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	104	570	5	ENST00000375759.3:c.7782dup	p.Glu2595Ter	p.E2595*	ENST00000375759	NM_015001.2	2594	tct/tcTt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49418470	49418470	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	127	783	1	ENST00000301067.7:c.15943C>G	p.Gln5315Glu	p.Q5315E	ENST00000301067	NM_003482.3	5315	Caa/Gaa																																																																														
KMT2D	0	MSKCC	GRCh37	12	49426838	49426839	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0021378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	254	578	7	ENST00000301067.7:c.11649_11650del	p.His3883GlnfsTer128	p.H3883Qfs*128	ENST00000301067	NM_003482.3	3883	caCAgt/cagt																																																																														
KMT2D	0	MSKCC	GRCh37	12	49431205	49431205	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	235	750	15	ENST00000301067.7:c.9934C>T	p.Gln3312Ter	p.Q3312*	ENST00000301067	NM_003482.3	3312	Cag/Tag																																																																														
SETD2	0	MSKCC	GRCh37	3	47098642	47098642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	208	732	3	ENST00000409792.3:c.6632G>C	p.Gly2211Ala	p.G2211A	ENST00000409792	NM_014159.6	2211	gGa/gCa																																																																														
KMT2C	0	MSKCC	GRCh37	7	151896365	151896366	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0021378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	191	580	9	ENST00000262189.6:c.4271dup	p.His1424GlnfsTer5	p.H1424Qfs*5	ENST00000262189	NM_170606.2	1424	cac/caAc																																																																														
KMT2C	0	MSKCC	GRCh37	7	151902207	151902208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	104	842	8	ENST00000262189.6:c.3944dup	p.Leu1315PhefsTer6	p.L1315Ffs*6	ENST00000262189	NM_170606.2	1315	tta/ttTa																																																																														
RXRA	0	MSKCC	GRCh37	9	137300966	137300966	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0021378-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	180	710	6	ENST00000481739.1:c.610+1G>A		p.X204_splice	ENST00000481739	NM_002957.4	204																																																																															
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	437	954	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																																																														
FGFR2	0	MSKCC	GRCh37	10	123325158	123325158	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56226109		P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	352	747	0	ENST00000358487.5:c.170C>T	p.Ser57Leu	p.S57L	ENST00000358487	NM_000141.4	57	tCg/tTg																																																																														
PTPRT	0	MSKCC	GRCh37	20	41306677	41306677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	384	900	0	ENST00000373198.4:c.982C>T	p.Arg328Cys	p.R328C	ENST00000373198	NM_133170.3	328	Cgc/Tgc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44936024	44936024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	215	921	0	ENST00000377967.4:c.2785C>T	p.Pro929Ser	p.P929S	ENST00000377967	NM_021140.2	929	Cct/Tct																																																																														
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	116	593	2				ENST00000310581	NM_198253.2																																																																																
ARID2	0	MSKCC	GRCh37	12	46233249	46233249	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	316	599	0	ENST00000334344.6:c.1468C>T	p.Gln490Ter	p.Q490*	ENST00000334344	NM_152641.2	490	Caa/Taa																																																																														
BIRC3	0	MSKCC	GRCh37	11	102195335	102195335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	125	636	0	ENST00000263464.3:c.95G>A	p.Arg32Gln	p.R32Q	ENST00000263464	NM_001165.4	32	cGa/cAa																																																																														
MDM2	0	MSKCC	GRCh37	12	69230522	69230522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	340	612	0	ENST00000462284.1:c.911C>T	p.Ser304Phe	p.S304F	ENST00000462284	NM_002392.5	304	tCc/tTc																																																																														
FLT3	0	MSKCC	GRCh37	13	28597543	28597543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	295	954	0	ENST00000241453.7:c.2362C>T	p.Leu788Phe	p.L788F	ENST00000241453	NM_004119.2	788	Ctt/Ttt																																																																														
BRCA2	0	MSKCC	GRCh37	13	32911912	32911912	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	374	796	0	ENST00000380152.3:c.3420T>A	p.Ser1140Arg	p.S1140R	ENST00000380152		1140	agT/agA																																																																														
GRIN2A	0	MSKCC	GRCh37	16	9858313	9858313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	214	478	0	ENST00000330684.3:c.3088C>T	p.Pro1030Ser	p.P1030S	ENST00000330684	NM_001134407.1	1030	Cca/Tca																																																																														
KMT2B	0	MSKCC	GRCh37	19	36221763	36221763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	220	1118	0	ENST00000222270.7:c.5432C>T	p.Ser1811Phe	p.S1811F	ENST00000222270	NM_014727.1	1811	tCc/tTc																																																																														
KDR	0	MSKCC	GRCh37	4	55964962	55964962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	230	405	0	ENST00000263923.4:c.2275G>A	p.Glu759Lys	p.E759K	ENST00000263923	NM_002253.2	759	Gaa/Aaa																																																																														
FAT1	0	MSKCC	GRCh37	4	187628185	187628185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	418	937	0	ENST00000441802.2:c.2797C>T	p.Arg933Cys	p.R933C	ENST00000441802	NM_005245.3	933	Cgt/Tgt																																																																														
PREX2	0	MSKCC	GRCh37	8	69031699	69031699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	393	820	0	ENST00000288368.4:c.3454C>T	p.His1152Tyr	p.H1152Y	ENST00000288368	NM_024870.2	1152	Cat/Tat																																																																														
PAX5	0	MSKCC	GRCh37	9	36923406	36923406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	229	1010	1	ENST00000358127.4:c.856C>T	p.Pro286Ser	p.P286S	ENST00000358127	NM_001280556.1	286	Cct/Tct																																																																														
SYK	0	MSKCC	GRCh37	9	93624594	93624594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021174-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	146	690	0	ENST00000375746.1:c.685C>T	p.Pro229Ser	p.P229S	ENST00000375746	NM_001174167.1	229	Ccc/Tcc																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	94	862	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	115	1078	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																																																														
CHEK2	0	MSKCC	GRCh37	22	29107994	29107994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	125	763	0	ENST00000328354.6:c.695G>A	p.Gly232Glu	p.G232E	ENST00000328354	NM_007194.3	232	gGa/gAa																																																																														
VHL	0	MSKCC	GRCh37	3	10183813	10183813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	81	992	0	ENST00000256474.2:c.282G>T	p.Glu94Asp	p.E94D	ENST00000256474	NM_000551.3	94	gaG/gaT																																																																														
RBM10	0	MSKCC	GRCh37	X	47041425	47041425	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021105-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	97	957	0	ENST00000329236.7:c.1535del	p.Tyr512LeufsTer114	p.Y512Lfs*114	ENST00000329236	NM_001204466.1	512	tAt/tt																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	169	630	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
SETD2	0	MSKCC	GRCh37	3	47164508	47164508	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	185	564	0	ENST00000409792.3:c.1618del	p.Arg540AspfsTer39	p.R540Dfs*39	ENST00000409792	NM_014159.6	540	Cga/ga																																																																														
BAP1	0	MSKCC	GRCh37	3	52441268	52441269	+	missense_variant	Missense_Mutation	DNP	AC	AC	TG			P-0021441-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	283	686	2	ENST00000460680.1:c.501_502delinsCA	p.Phe168Ile	p.F168I	ENST00000460680	NM_004656.3	167	gcGTtc/gcCAtc																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	229	745	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	316	1104	3	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																																																														
EGFR	0	MSKCC	GRCh37	7	55266440	55266440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	223	897	0	ENST00000275493.2:c.2732G>C	p.Gly911Ala	p.G911A	ENST00000275493	NM_005228.3	911	gGa/gCa																																																																														
KDR	0	MSKCC	GRCh37	4	55968633	55968633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200338299		P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	234	991	2	ENST00000263923.4:c.2030C>T	p.Thr677Met	p.T677M	ENST00000263923	NM_002253.2	677	aCg/aTg																																																																														
HNF1A	0	MSKCC	GRCh37	12	121432086	121432086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	272	1058	0	ENST00000257555.6:c.833G>A	p.Arg278Gln	p.R278Q	ENST00000257555		278	cGg/cAg																																																																														
PTEN	0	MSKCC	GRCh37	10	89720866	89720887	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAATTTTAAGGTCAGTTAAATT	AAATTTTAAGGTCAGTTAAATT	-			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	26	611	0	ENST00000371953.3:c.1020_1026+15del		p.X340_splice	ENST00000371953	NM_000314.4	340																																																																															
PTPN11	0	MSKCC	GRCh37	12	112940014	112940014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	273	1139	2	ENST00000351677.2:c.1666G>T	p.Asp556Tyr	p.D556Y	ENST00000351677	NM_002834.3	556	Gat/Tat																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928201	178928236	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCTTCCATCTCTTAGGAAACTCCATGCTTAGAG	TTTTCTTCCATCTCTTAGGAAACTCCATGCTTAGAG	-			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	96	489	0	ENST00000263967.3:c.1405-16_1424del		p.X469_splice	ENST00000263967	NM_006218.2	469																																																																															
PIK3R1	0	MSKCC	GRCh37	5	67588147	67588148	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	91	529	0	ENST00000274335.5:c.978_979del	p.Met326IlefsTer6	p.M326Ifs*6	ENST00000274335		326	aTG/a																																																																														
PTCH1	0	MSKCC	GRCh37	9	98248121	98248121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	182	788	2	ENST00000331920.6:c.430C>T	p.Arg144Cys	p.R144C	ENST00000331920	NM_000264.3	144	Cgc/Tgc																																																																														
FAM58A	0	MSKCC	GRCh37	X	152858044	152858044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021352-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	169	594	4	ENST00000406277.2:c.571G>A	p.Val191Met	p.V191M	ENST00000406277	NM_152274.4	191	Gtg/Atg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	32	918	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0021200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	11	583	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																																																														
TP53	0	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0021200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	134	804	0	ENST00000269305.4:c.792_794delACT	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																																																														
IKZF1	0	MSKCC	GRCh37	7	50468309	50468309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021200-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	59	761	5	ENST00000331340.3:c.1544G>A	p.Arg515His	p.R515H	ENST00000331340	NM_006060.4	515	cGc/cAc																																																																														
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	184	988	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																																																														
EPHA3	0	MSKCC	GRCh37	3	89391107	89391107	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	59	754	0	ENST00000336596.2:c.1173C>G	p.Asn391Lys	p.N391K	ENST00000336596	NM_005233.5	391	aaC/aaG																																																																														
AMER1	0	MSKCC	GRCh37	X	63411360	63411360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			219	71	441	1	ENST00000330258.3:c.1807G>A	p.Ala603Thr	p.A603T	ENST00000330258	NM_152424.3	603	Gct/Act																																																																														
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021114-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	434	815	1	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																																																														
PREX2	0	MSKCC	GRCh37	8	68995482	68995482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	26	721	0	ENST00000288368.4:c.1886G>T	p.Gly629Val	p.G629V	ENST00000288368	NM_024870.2	629	gGc/gTc																																																																														
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	166	589	0				ENST00000310581	NM_198253.2																																																																																
ERCC2	0	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	224	1052	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																																																														
KDM6A	0	MSKCC	GRCh37	X	44913136	44913136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	317	481	0	ENST00000377967.4:c.811C>T	p.Gln271Ter	p.Q271*	ENST00000377967	NM_021140.2	271	Cag/Tag																																																																														
NOTCH1	0	MSKCC	GRCh37	9	139403413	139403413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	293	1107	0	ENST00000277541.6:c.3080C>T	p.Ser1027Leu	p.S1027L	ENST00000277541	NM_017617.3	1027	tCa/tTa																																																																														
CDC42	0	MSKCC	GRCh37	1	22405068	22405068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	161	461	0	ENST00000344548.3:c.97G>T	p.Val33Leu	p.V33L	ENST00000344548	NM_001039802.1	33	Gta/Tta																																																																														
JUN	0	MSKCC	GRCh37	1	59248735	59248735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	366	1063	1	ENST00000371222.2:c.8C>T	p.Ala3Val	p.A3V	ENST00000371222	NM_002228.3	3	gCa/gTa																																																																														
GATA3	0	MSKCC	GRCh37	10	8105989	8105989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	253	561	0	ENST00000346208.3:c.809C>T	p.Ser270Leu	p.S270L	ENST00000346208		270	tCg/tTg																																																																														
ARID2	0	MSKCC	GRCh37	12	46298779	46298779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	261	702	0	ENST00000334344.6:c.5426C>A	p.Ser1809Tyr	p.S1809Y	ENST00000334344	NM_152641.2	1809	tCc/tAc																																																																														
RB1	0	MSKCC	GRCh37	13	48954353	48954353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			128	272	646	0	ENST00000267163.4:c.1474G>A	p.Glu492Lys	p.E492K	ENST00000267163	NM_000321.2	492	Gag/Aag																																																																														
MGA	0	MSKCC	GRCh37	15	42026774	42026774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	232	653	1	ENST00000219905.7:c.3898G>A	p.Asp1300Asn	p.D1300N	ENST00000219905	NM_001164273.1	1300	Gat/Aat																																																																														
IGF1R	0	MSKCC	GRCh37	15	99467863	99467863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	148	496	0	ENST00000268035.6:c.2732C>T	p.Ser911Phe	p.S911F	ENST00000268035	NM_000875.3	911	tCt/tTt																																																																														
CREBBP	0	MSKCC	GRCh37	16	3794879	3795568	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTTCCCGAAACTTACTCTTAGCACTGAATTTGTTTTCTTTTCGAGGTCTGCCAGTTTTCTTCAAGCAGTTGTCGCACACAAAACTGCAAAATAATAGTGGTATGATGAGACTGTATATAATGATGTAAATTGTCAAACCAACAAAATGCAGCATTCAGATAGTTTGTTGGCAGTTTAAATCACATTATTATAAAATTAAAGAGTGAAGAGGCAGACTGCTTTGATTCCACAATTCCTAAAGCGGACAAACGCTTAGAACTTAAATTTAGAACCAACTGCCATCTCTCTTAATCGCTGAATTCTTGCTGACAACAATGAATGAGATGCAGTAGCCACTGCAACTGCCCCGCCACTGGCTCTGTGCAGAACTGCCCTCCAGGCCAGGGGAAACAACTCACCCTGAAGGCCAAATGATGTCATAGTGCAGAACGCAAATCTGATGCATCTTCCGGCCACACTCCTTGCAATCAACGAAACTAGGAGGCAAAGAAGGCGCACTGTTAAAGCACACGGAACCACAAGACCAGAGTCACTTGTAGAAGTCTGTGTGTGCGTCCACACCTTGTTCTCTGGGTTACTTTGAGTAGTGCTGACATTAATGCGTGTGTTGGCTGATTCAGCTATATTTTACAATGCATCCGTATGATATCTTCTACAGGAAAAAGCTTTCTTCTTTTGTTTGTACAAGC	GCTTCCCGAAACTTACTCTTAGCACTGAATTTGTTTTCTTTTCGAGGTCTGCCAGTTTTCTTCAAGCAGTTGTCGCACACAAAACTGCAAAATAATAGTGGTATGATGAGACTGTATATAATGATGTAAATTGTCAAACCAACAAAATGCAGCATTCAGATAGTTTGTTGGCAGTTTAAATCACATTATTATAAAATTAAAGAGTGAAGAGGCAGACTGCTTTGATTCCACAATTCCTAAAGCGGACAAACGCTTAGAACTTAAATTTAGAACCAACTGCCATCTCTCTTAATCGCTGAATTCTTGCTGACAACAATGAATGAGATGCAGTAGCCACTGCAACTGCCCCGCCACTGGCTCTGTGCAGAACTGCCCTCCAGGCCAGGGGAAACAACTCACCCTGAAGGCCAAATGATGTCATAGTGCAGAACGCAAATCTGATGCATCTTCCGGCCACACTCCTTGCAATCAACGAAACTAGGAGGCAAAGAAGGCGCACTGTTAAAGCACACGGAACCACAAGACCAGAGTCACTTGTAGAAGTCTGTGTGTGCGTCCACACCTTGTTCTCTGGGTTACTTTGAGTAGTGCTGACATTAATGCGTGTGTTGGCTGATTCAGCTATATTTTACAATGCATCCGTATGATATCTTCTACAGGAAAAAGCTTTCTTCTTTTGTTTGTACAAGC	-			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	47	780	0	ENST00000262367.5:c.3837-213_3982+16del		p.X1279_splice	ENST00000262367	NM_004380.2	1279																																																																															
CREBBP	0	MSKCC	GRCh37	16	3824616	3824616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	185	595	1	ENST00000262367.5:c.2237C>T	p.Pro746Leu	p.P746L	ENST00000262367	NM_004380.2	746	cCa/cTa																																																																														
RAD51C	0	MSKCC	GRCh37	17	56774070	56774070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	517	823	0	ENST00000337432.4:c.421G>A	p.Asp141Asn	p.D141N	ENST00000337432	NM_058216.2	141	Gat/Aat																																																																														
BCL2	0	MSKCC	GRCh37	18	60985407	60985407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	305	1024	0	ENST00000333681.4:c.493G>A	p.Glu165Lys	p.E165K	ENST00000333681		165	Gag/Aag																																																																														
INSR	0	MSKCC	GRCh37	19	7184382	7184382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	290	929	0	ENST00000302850.5:c.919C>T	p.His307Tyr	p.H307Y	ENST00000302850	NM_000208.2	307	Cac/Tac																																																																														
MYCN	0	MSKCC	GRCh37	2	16082748	16082748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	80	220	0	ENST00000281043.3:c.562G>A	p.Asp188Asn	p.D188N	ENST00000281043	NM_005378.4	188	Gat/Aat																																																																														
ALK	0	MSKCC	GRCh37	2	29551332	29551332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	220	826	1	ENST00000389048.3:c.1298C>A	p.Ser433Tyr	p.S433Y	ENST00000389048	NM_004304.4	433	tCc/tAc																																																																														
EPAS1	0	MSKCC	GRCh37	2	46603793	46603793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	245	903	0	ENST00000263734.3:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000263734	NM_001430.4	384	Gag/Aag																																																																														
MSH6	0	MSKCC	GRCh37	2	48033363	48033368	+	inframe_deletion	In_Frame_Del	DEL	GATGGG	GATGGG	-			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	234	728	0	ENST00000234420.5:c.3667_3672del	p.Asp1223_Gly1224del	p.D1223_G1224del	ENST00000234420	NM_000179.2	1223	GATGGG/-																																																																														
SF3B1	0	MSKCC	GRCh37	2	198262794	198262794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	317	629	0	ENST00000335508.6:c.3181G>A	p.Glu1061Lys	p.E1061K	ENST00000335508	NM_012433.2	1061	Gag/Aag																																																																														
TOP1	0	MSKCC	GRCh37	20	39658087	39658087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	175	591	0	ENST00000361337.2:c.50G>A	p.Arg17Gln	p.R17Q	ENST00000361337	NM_003286.2	17	cGa/cAa																																																																														
MAPK1	0	MSKCC	GRCh37	22	22127167	22127167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	240	618	0	ENST00000215832.6:c.961G>T	p.Asp321Tyr	p.D321Y	ENST00000215832	NM_002745.4	321	Gac/Tac																																																																														
EP300	0	MSKCC	GRCh37	22	41537180	41537180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	343	873	0	ENST00000263253.7:c.2007G>A	p.Met669Ile	p.M669I	ENST00000263253	NM_001429.3	669	atG/atA																																																																														
EPHB1	0	MSKCC	GRCh37	3	134873113	134873113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	228	734	2	ENST00000398015.3:c.1417G>A	p.Glu473Lys	p.E473K	ENST00000398015	NM_004441.4	473	Gag/Aag																																																																														
ATR	0	MSKCC	GRCh37	3	142279226	142279226	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	367	779	0	ENST00000350721.4:c.1420C>T	p.Gln474Ter	p.Q474*	ENST00000350721	NM_001184.3	474	Cag/Tag																																																																														
FBXW7	0	MSKCC	GRCh37	4	153247247	153247247	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	305	607	0	ENST00000281708.4:c.1555T>G	p.Tyr519Asp	p.Y519D	ENST00000281708	NM_033632.3	519	Tat/Gat																																																																														
APC	0	MSKCC	GRCh37	5	112163655	112163655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	223	515	0	ENST00000257430.4:c.1578G>A	p.Met526Ile	p.M526I	ENST00000257430	NM_000038.5	526	atG/atA																																																																														
IRF4	0	MSKCC	GRCh37	6	393267	393267	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	251	908	0	ENST00000380956.4:c.117del	p.Leu40TrpfsTer62	p.L40Wfs*62	ENST00000380956	NM_001195286.1	39	Ggg/gg																																																																														
HIST1H1C	0	MSKCC	GRCh37	6	26056141	26056141	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	286	656	0	ENST00000343677.2:c.516G>C	p.Lys172Asn	p.K172N	ENST00000343677	NM_005319.3	172	aaG/aaC																																																																														
VEGFA	0	MSKCC	GRCh37	6	43738985	43738985	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	262	629	0	ENST00000523873.1:c.2T>G	p.Met1?	p.M1?	ENST00000523873		1	aTg/aGg																																																																														
EPHA7	0	MSKCC	GRCh37	6	94120428	94120428	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	78	466	0	ENST00000369303.4:c.623T>A	p.Ile208Asn	p.I208N	ENST00000369303	NM_004440.3	208	aTt/aAt																																																																														
IFNGR1	0	MSKCC	GRCh37	6	137527337	137527337	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	198	936	0	ENST00000367739.4:c.309A>C	p.Lys103Asn	p.K103N	ENST00000367739	NM_000416.2	103	aaA/aaC																																																																														
PTCH1	0	MSKCC	GRCh37	9	98270585	98270585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021176-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			31	31	93	0	ENST00000331920.6:c.59G>A	p.Cys20Tyr	p.C20Y	ENST00000331920	NM_000264.3	20	tGt/tAt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	127	502	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																																																														
POLE	0	MSKCC	GRCh37	12	133249338	133249338	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	205	932	0	ENST00000320574.5:c.1561G>T	p.Glu521Ter	p.E521*	ENST00000320574	NM_006231.2	521	Gag/Tag																																																																														
PRKD1	0	MSKCC	GRCh37	14	30066937	30066937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021271-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	114	489	0	ENST00000331968.5:c.2194C>T	p.Arg732Trp	p.R732W	ENST00000331968	NM_002742.2	732	Cgg/Tgg																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007973-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			439	739	836	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007973-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			248	158	513	0				ENST00000310581	NM_198253.2																																																																																
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007973-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			407	164	550	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																																																														
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0007973-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			246	143	472	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																																																														
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007973-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			368	214	871	1	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																																																														
SMAD3	0	MSKCC	GRCh37	15	67482854	67482854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007973-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			324	220	710	2	ENST00000327367.4:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000327367	NM_005902.3	420	Cgc/Tgc																																																																														
LATS2	0	MSKCC	GRCh37	13	21562409	21562409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007973-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	222	864	0	ENST00000382592.4:c.1510G>A	p.Val504Met	p.V504M	ENST00000382592	NM_014572.2	504	Gtg/Atg																																																																														
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0021194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	10	814	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																																																														
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0021194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	113	1014	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																																																														
NCOR1	0	MSKCC	GRCh37	17	16062187	16062187	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0021194-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	106	812	1	ENST00000268712.3:c.619C>T	p.Gln207Ter	p.Q207*	ENST00000268712	NM_006311.3	207	Caa/Taa																																																																														
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	198	899	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																																																														
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	118	1091	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																																																														
LATS2	0	MSKCC	GRCh37	13	21557647	21557647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	77	1134	0	ENST00000382592.4:c.2198A>G	p.Tyr733Cys	p.Y733C	ENST00000382592	NM_014572.2	733	tAc/tGc																																																																														
STAG2	0	MSKCC	GRCh37	X	123224545	123224545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021102-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	77	516	0	ENST00000218089.9:c.3398G>T	p.Arg1133Leu	p.R1133L	ENST00000218089	NM_001042749.1	1133	cGg/cTg																																																																														
ARID1B	0	MSKCC	GRCh37	6	157522598	157522598	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	57	696	0	ENST00000346085.5:c.4870C>T	p.Arg1624Ter	p.R1624*	ENST00000346085	NM_020732.3	1624	Cga/Tga																																																																														
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	28	561	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																																																														
ATM	0	MSKCC	GRCh37	11	108115727	108115727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			179	17	267	0	ENST00000278616.4:c.875C>T	p.Pro292Leu	p.P292L	ENST00000278616	NM_000051.3	292	cCg/cTg																																																																														
TET2	0	MSKCC	GRCh37	4	106193931	106193931	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	17	305	0	ENST00000380013.4:c.4393C>T	p.Arg1465Ter	p.R1465*	ENST00000380013	NM_001127208.2	1465	Cga/Tga																																																																														
ARID1A	0	MSKCC	GRCh37	1	27088659	27088659	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	59	1003	0	ENST00000324856.7:c.2272delC	p.Gln758ArgfsTer75	p.Q758Rfs*75	ENST00000324856	NM_006015.4	756	aaC/aa																																																																														
ATM	0	MSKCC	GRCh37	11	108099987	108099987	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	21	389	2	ENST00000278616.4:c.268A>G	p.Arg90Gly	p.R90G	ENST00000278616	NM_000051.3	90	Agg/Ggg																																																																														
KMT2B	0	MSKCC	GRCh37	19	36210688	36210688	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	70	630	1	ENST00000222270.7:c.439C>T	p.Arg147Ter	p.R147*	ENST00000222270	NM_014727.1	147	Cga/Tga																																																																														
BCOR	0	MSKCC	GRCh37	X	39913224	39913224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	51	668	0	ENST00000378444.4:c.4891G>A	p.Asp1631Asn	p.D1631N	ENST00000378444	NM_001123385.1	1631	Gat/Aat																																																																														
MGA	0	MSKCC	GRCh37	15	42046674	42046674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	39	627	0	ENST00000219905.7:c.7048G>A	p.Val2350Met	p.V2350M	ENST00000219905	NM_001164273.1	2350	Gtg/Atg																																																																														
NSD1	0	MSKCC	GRCh37	5	176639097	176639097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	47	505	0	ENST00000439151.2:c.3697C>T	p.Arg1233Trp	p.R1233W	ENST00000439151	NM_022455.4	1233	Cgg/Tgg																																																																														
SPEN	0	MSKCC	GRCh37	1	16257980	16257980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	32	483	1	ENST00000375759.3:c.5245G>A	p.Val1749Ile	p.V1749I	ENST00000375759	NM_015001.2	1749	Gta/Ata																																																																														
JAK1	0	MSKCC	GRCh37	1	65301849	65301849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	20	322	1	ENST00000342505.4:c.3190G>A	p.Val1064Ile	p.V1064I	ENST00000342505	NM_002227.2	1064	Gtc/Atc																																																																														
ERBB3	0	MSKCC	GRCh37	12	56488226	56488226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	40	627	0	ENST00000267101.3:c.1745G>A	p.Gly582Glu	p.G582E	ENST00000267101	NM_001982.3	582	gGg/gAg																																																																														
PRKD1	0	MSKCC	GRCh37	14	30194881	30194881	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	25	409	0	ENST00000331968.5:c.265-1G>A		p.X89_splice	ENST00000331968	NM_002742.2	89																																																																															
IGF1R	0	MSKCC	GRCh37	15	99465522	99465522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	50	675	0	ENST00000268035.6:c.2347G>A	p.Asp783Asn	p.D783N	ENST00000268035	NM_000875.3	783	Gat/Aat																																																																														
PALB2	0	MSKCC	GRCh37	16	23619272	23619272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	43	681	1	ENST00000261584.4:c.3263C>A	p.Pro1088His	p.P1088H	ENST00000261584	NM_024675.3	1088	cCt/cAt																																																																														
CTCF	0	MSKCC	GRCh37	16	67655479	67655479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	33	566	0	ENST00000264010.4:c.1342C>T	p.Arg448Ter	p.R448*	ENST00000264010	NM_006565.3	448	Cga/Tga																																																																														
INSR	0	MSKCC	GRCh37	19	7170599	7170599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	52	724	1	ENST00000302850.5:c.1432C>T	p.Arg478Cys	p.R478C	ENST00000302850	NM_000208.2	478	Cgc/Tgc																																																																														
SMARCA4	0	MSKCC	GRCh37	19	11130273	11130273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	34	497	0	ENST00000344626.4:c.2512C>A	p.Pro838Thr	p.P838T	ENST00000344626	NM_003072.3	838	Cca/Aca																																																																														
POLD1	0	MSKCC	GRCh37	19	50905585	50905585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	86	922	1	ENST00000440232.2:c.713C>T	p.Thr238Met	p.T238M	ENST00000440232	NM_002691.3	238	aCg/aTg																																																																														
MSH6	0	MSKCC	GRCh37	2	48028136	48028136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	22	385	0	ENST00000234420.5:c.3014G>A	p.Arg1005Gln	p.R1005Q	ENST00000234420	NM_000179.2	1005	cGa/cAa																																																																														
SETD2	0	MSKCC	GRCh37	3	47163889	47163889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	23	511	0	ENST00000409792.3:c.2237T>C	p.Phe746Ser	p.F746S	ENST00000409792	NM_014159.6	746	tTt/tCt																																																																														
E2F3	0	MSKCC	GRCh37	6	20486961	20486961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	26	459	0	ENST00000346618.3:c.926G>A	p.Gly309Asp	p.G309D	ENST00000346618	NM_001949.4	309	gGc/gAc																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32165085	32165085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	41	585	0	ENST00000375023.3:c.5043G>T	p.Glu1681Asp	p.E1681D	ENST00000375023	NM_004557.3	1681	gaG/gaT																																																																														
PTPRD	0	MSKCC	GRCh37	9	8499814	8499814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	31	510	1	ENST00000356435.5:c.2155G>A	p.Glu719Lys	p.E719K	ENST00000356435		719	Gag/Aag																																																																														
FAM58A	0	MSKCC	GRCh37	X	152861493	152861493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	31	440	0	ENST00000406277.2:c.259C>T	p.Arg87Trp	p.R87W	ENST00000406277	NM_152274.4	87	Cgg/Tgg																																																																														
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	141	483	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																																																														
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	14	506	0				ENST00000310581	NM_198253.2																																																																																
PPP6C	0	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	60	419	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																																																														
INSR	0	MSKCC	GRCh37	19	7267441	7267442	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			107	45	524	3	ENST00000302850.5:c.566_567delinsTT	p.Thr189Ile	p.T189I	ENST00000302850	NM_000208.2	189	aCC/aTT																																																																														
KMT2B	0	MSKCC	GRCh37	19	36212188	36212188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			138	60	515	1	ENST00000222270.7:c.1939C>T	p.Leu647Phe	p.L647F	ENST00000222270	NM_014727.1	647	Ctt/Ttt																																																																														
CASP8	0	MSKCC	GRCh37	2	202131240	202131241	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0021440-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	44	512	2	ENST00000358485.4:c.208_209delinsAA	p.Gly70Lys	p.G70K	ENST00000358485	NM_001080125.1	70	GGg/AAg																																																																														
CDK12	0	MSKCC	GRCh37	17	37671997	37671997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	221	703	1	ENST00000447079.4:c.2782G>A	p.Glu928Lys	p.E928K	ENST00000447079	NM_015083.1	928	Gaa/Aaa																																																																														
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	1328	993	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																																																														
TP53	0	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	208	1458	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt																																																																														
NCOA3	0	MSKCC	GRCh37	20	46279766	46279766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	54	943	0	ENST00000371998.3:c.3692G>C	p.Arg1231Thr	p.R1231T	ENST00000371998		1231	aGa/aCa																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64126717	64126717	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	32	709	0	ENST00000334205.4:c.10G>C	p.Glu4Gln	p.E4Q	ENST00000334205	NM_003942.2	4	Gag/Cag																																																																														
DNMT3B	0	MSKCC	GRCh37	20	31387115	31387115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			842	50	1046	0	ENST00000328111.2:c.1740G>C	p.Leu580Phe	p.L580F	ENST00000328111	NM_006892.3	580	ttG/ttC																																																																														
MDC1	0	MSKCC	GRCh37	6	30680989	30680989	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	64	984	0	ENST00000376406.3:c.730G>C	p.Glu244Gln	p.E244Q	ENST00000376406	NM_014641.2	244	Gag/Cag																																																																														
PARK2	0	MSKCC	GRCh37	6	162683572	162683572	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	37	729	0	ENST00000366898.1:c.397C>G	p.Pro133Ala	p.P133A	ENST00000366898	NM_004562.2	133	Cca/Gca																																																																														
KMT2C	0	MSKCC	GRCh37	7	151842368	151842368	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	84	286	0	ENST00000262189.6:c.14044G>T	p.Glu4682Ter	p.E4682*	ENST00000262189	NM_170606.2	4682	Gag/Tag																																																																														
FGFR1	0	MSKCC	GRCh37	8	38274925	38274929	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGC	GTTGC	-			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	254	1351	0	ENST00000425967.3:c.1651_1655del	p.Ala551ArgfsTer21	p.A551Rfs*21	ENST00000425967	NM_001174067.1	551	GCAACa/a																																																																														
TEK	0	MSKCC	GRCh37	9	27197363	27197363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	51	1042	0	ENST00000380036.4:c.1675C>G	p.Leu559Val	p.L559V	ENST00000380036	NM_000459.3	559	Cta/Gta																																																																														
GATA1	0	MSKCC	GRCh37	X	48650448	48650448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021173-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	63	1419	5	ENST00000376670.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000376670	NM_002049.3	140	Cgg/Tgg																																																																														
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0021334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	305	994	5	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	18	940	0	ENST00000263967.3:c.1634A>C	p.Glu545Ala	p.E545A	ENST00000263967	NM_006218.2	545	gAg/gCg																																																																														
MSH2	0	MSKCC	GRCh37	2	47702205	47702205	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021334-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	183	777	0	ENST00000233146.2:c.1801C>T	p.Gln601Ter	p.Q601*	ENST00000233146	NM_000251.2	601	Cag/Tag																																																																														
STK11	0	MSKCC	GRCh37	19	1221320	1221320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	88	989	0	ENST00000326873.7:c.843delG	p.Leu282SerfsTer5	p.L282Sfs*5	ENST00000326873	NM_000455.4	281	ccG/cc																																																																														
PIK3C2G	0	MSKCC	GRCh37	12	18435578	18435578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	24	505	1	ENST00000266497.5:c.563C>T	p.Pro188Leu	p.P188L	ENST00000266497		188	cCg/cTg																																																																														
RFWD2	0	MSKCC	GRCh37	1	175916366	175916366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	40	525	0	ENST00000367669.3:c.2143G>T	p.Val715Leu	p.V715L	ENST00000367669	NM_022457.5	715	Gtg/Ttg																																																																														
RPS6KA4	0	MSKCC	GRCh37	11	64136034	64136034	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	62	975	0	ENST00000334205.4:c.1295A>G	p.Gln432Arg	p.Q432R	ENST00000334205	NM_003942.2	432	cAg/cGg																																																																														
KMT2A	0	MSKCC	GRCh37	11	118348769	118348769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	42	643	0	ENST00000534358.1:c.3422C>T	p.Pro1141Leu	p.P1141L	ENST00000534358	NM_005933.3	1141	cCc/cTc																																																																														
NTRK3	0	MSKCC	GRCh37	15	88680635	88680635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	34	609	0	ENST00000360948.2:c.622G>T	p.Asp208Tyr	p.D208Y	ENST00000360948	NM_001012338.2	208	Gac/Tac																																																																														
TOP1	0	MSKCC	GRCh37	20	39750720	39750720	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	29	502	1	ENST00000361337.2:c.2120A>T	p.Asp707Val	p.D707V	ENST00000361337	NM_003286.2	707	gAc/gTc																																																																														
APC	0	MSKCC	GRCh37	5	112175604	112175604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	27	555	0	ENST00000257430.4:c.4313C>G	p.Thr1438Arg	p.T1438R	ENST00000257430	NM_000038.5	1438	aCa/aGa																																																																														
EPHA7	0	MSKCC	GRCh37	6	94068105	94068105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	22	514	0	ENST00000369303.4:c.857C>G	p.Ser286Cys	p.S286C	ENST00000369303	NM_004440.3	286	tCt/tGt																																																																														
AGO2	0	MSKCC	GRCh37	8	141566315	141566315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021367-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	47	823	0	ENST00000220592.5:c.1097G>T	p.Arg366Ile	p.R366I	ENST00000220592	NM_012154.3	366	aGa/aTa																																																																														
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	604	692	2	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	423	828	15	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																																																														
FBXW7	0	MSKCC	GRCh37	4	153245399	153245399	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	339	882	3	ENST00000281708.4:c.1792A>C	p.Asn598His	p.N598H	ENST00000281708	NM_033632.3	598	Aat/Cat																																																																														
NOTCH4	0	MSKCC	GRCh37	6	32163807	32163807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	366	861	0	ENST00000375023.3:c.5419G>A	p.Ala1807Thr	p.A1807T	ENST00000375023	NM_004557.3	1807	Gct/Act																																																																														
RBM10	0	MSKCC	GRCh37	X	47045969	47045969	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	354	985	5	ENST00000329236.7:c.2530A>G	p.Met844Val	p.M844V	ENST00000329236	NM_001204466.1	844	Atg/Gtg																																																																														
CTNNB1	0	MSKCC	GRCh37	3	41266068	41266098	+	protein_altering_variant	In_Frame_Del	DEL	TTAGTCACTGGCAGCAACAGTCTTACCTGGA	TTAGTCACTGGCAGCAACAGTCTTACCTGGA	G			P-0021351-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	209	454	4	ENST00000349496.5:c.65_95delinsG	p.Val22_Asp32delinsGly	p.V22_D32delinsG	ENST00000349496	NM_001904.3	22	gTTAGTCACTGGCAGCAACAGTCTTACCTGGAc/gGc																																																																														
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	284	733	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																																																														
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0021168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	328	821	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																																																														
CDKN2A	0	MSKCC	GRCh37	9	21971138	21971164	+	inframe_deletion	In_Frame_Del	DEL	CGGCGCAGTTGGGCTCCGCGCCGTGGA	CGGCGCAGTTGGGCTCCGCGCCGTGGA	-			P-0021168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	187	698	0	ENST00000304494.5:c.194_220del	p.Leu65_Asp74delinsHis	p.L65_D74delinsH	ENST00000304494	NM_000077.4	65	cTCCACGGCGCGGAGCCCAACTGCGCCGac/cac																																																																														
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971138	21971164	+	inframe_deletion	In_Frame_Del	DEL	CGGCGCAGTTGGGCTCCGCGCCGTGGA	CGGCGCAGTTGGGCTCCGCGCCGTGGA	-			P-0021168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	187	698	0	ENST00000304494.5:c.194_220del	p.Leu65_Asp74delinsHis	p.L65_D74delinsH	ENST00000304494	NM_000077.4	65	cTCCACGGCGCGGAGCCCAACTGCGCCGac/cac																																																																														
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971138	21971164	+	inframe_deletion	In_Frame_Del	DEL	CGGCGCAGTTGGGCTCCGCGCCGTGGA	CGGCGCAGTTGGGCTCCGCGCCGTGGA	-			P-0021168-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	187	698	0	ENST00000304494.5:c.194_220del	p.Leu65_Asp74delinsHis	p.L65_D74delinsH	ENST00000304494	NM_000077.4	65	cTCCACGGCGCGGAGCCCAACTGCGCCGac/cac																																																																														
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			130	351	916	4	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																																																														
KEAP1	0	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			103	215	732	1	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																																																														
JAK3	0	MSKCC	GRCh37	19	17954648	17954648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			178	384	1198	0	ENST00000458235.1:c.246C>A	p.Phe82Leu	p.F82L	ENST00000458235	NM_000215.3	82	ttC/ttA																																																																														
ATM	0	MSKCC	GRCh37	11	108170545	108170545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			188	289	702	0	ENST00000278616.4:c.5110G>A	p.Glu1704Lys	p.E1704K	ENST00000278616	NM_000051.3	1704	Gaa/Aaa																																																																														
DIS3	0	MSKCC	GRCh37	13	73335596	73335596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	156	545	0	ENST00000377767.4:c.2575G>A	p.Ala859Thr	p.A859T	ENST00000377767	NM_014953.3	859	Gcc/Acc																																																																														
CARM1	0	MSKCC	GRCh37	19	11030344	11030344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			97	238	799	0	ENST00000327064.4:c.1094G>A	p.Gly365Glu	p.G365E	ENST00000327064	NM_199141.1	365	gGa/gAa																																																																														
JAK3	0	MSKCC	GRCh37	19	17954681	17954681	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	340	1121	0	ENST00000458235.1:c.213T>A	p.Phe71Leu	p.F71L	ENST00000458235	NM_000215.3	71	ttT/ttA																																																																														
ALK	0	MSKCC	GRCh37	2	29451908	29451908	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	177	1016	1	ENST00000389048.3:c.2657A>T	p.Asn886Ile	p.N886I	ENST00000389048	NM_004304.4	886	aAc/aTc																																																																														
PMS1	0	MSKCC	GRCh37	2	190719194	190719194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			259	238	540	0	ENST00000441310.2:c.1196C>G	p.Ser399Cys	p.S399C	ENST00000441310	NM_000534.4	399	tCt/tGt																																																																														
EPHB1	0	MSKCC	GRCh37	3	134920434	134920434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	47	914	0	ENST00000398015.3:c.2249T>C	p.Ile750Thr	p.I750T	ENST00000398015	NM_004441.4	750	aTt/aCt																																																																														
PIK3CA	0	MSKCC	GRCh37	3	178928219	178928219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			131	239	535	0	ENST00000263967.3:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000263967	NM_006218.2	469	Gaa/Aaa																																																																														
HIST1H3B	0	MSKCC	GRCh37	6	26031997	26031997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			139	273	541	0	ENST00000244661.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000244661	NM_003537.3	98	Gag/Aag																																																																														
FYN	0	MSKCC	GRCh37	6	112015609	112015609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			162	314	689	0	ENST00000368678.4:c.1233G>C	p.Leu411Phe	p.L411F	ENST00000368678		411	ttG/ttC																																																																														
KDM5C	0	MSKCC	GRCh37	X	53225109	53225109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			52	132	441	0	ENST00000375401.3:c.3109G>C	p.Asp1037His	p.D1037H	ENST00000375401	NM_004187.3	1037	Gat/Cat																																																																														
KDM5C	0	MSKCC	GRCh37	X	53225237	53225237	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009955-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			56	106	360	0	ENST00000375401.3:c.2982-1G>T		p.X994_splice	ENST00000375401	NM_004187.3	994																																																																															
WT1	0	MSKCC	GRCh37	11	32450105	32450105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021262-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	52	829	0	ENST00000332351.3:c.707C>T	p.Ala236Val	p.A236V	ENST00000332351	NM_024426.4	236	gCg/gTg																																																																														
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0021003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	5262	632	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	634	822	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48916766	48916766	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	269	668	0	ENST00000267163.4:c.299del	p.Gly100GlufsTer11	p.G100Efs*11	ENST00000267163	NM_000321.2	99	tGg/tg																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73346352	73346352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	257	581	1	ENST00000377767.4:c.1448G>T	p.Cys483Phe	p.C483F	ENST00000377767	NM_014953.3	483	tGt/tTt																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16075190	16075190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	394	491	1	ENST00000268712.3:c.362G>T	p.Arg121Leu	p.R121L	ENST00000268712	NM_006311.3	121	cGt/cTt																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81350082	81350082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	289	524	0	ENST00000222390.5:c.1250A>G	p.Lys417Arg	p.K417R	ENST00000222390	NM_000601.4	417	aAg/aGg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	91	841	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36219939	36219939	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	69	811	0	ENST00000222270.7:c.4741T>C	p.Cys1581Arg	p.C1581R	ENST00000222270	NM_014727.1	1581	Tgt/Cgt																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35871306	35871306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020998-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	24	443	0	ENST00000303115.3:c.528C>A	p.Asn176Lys	p.N176K	ENST00000303115	NM_002185.3	176	aaC/aaA																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	189	637	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	233	695	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67482874	67482874	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	198	410	0	ENST00000327367.4:c.1278G>T	p.Ter426TyrextTer6	p.*426Yext*6	ENST00000327367	NM_005902.3	426	taG/taT																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102811753	102811753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	182	745	1	ENST00000307046.8:c.431C>T	p.Thr144Met	p.T144M	ENST00000307046	NM_001111285.1	144	aCg/aTg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157502183	157502183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	72	482	0	ENST00000346085.5:c.3216G>T	p.Trp1072Cys	p.W1072C	ENST00000346085	NM_020732.3	1072	tgG/tgT																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971177	21971178	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	372	523	2	ENST00000304494.5:c.180_181delinsTT	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	60	gcGGag/gcTTag																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971177	21971178	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	372	523	2	ENST00000304494.5:c.180_181delinsTT	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	60	gcGGag/gcTTag																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971177	21971178	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	372	523	2	ENST00000304494.5:c.180_181delinsTT	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	60	gcGGag/gcTTag																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120881	115120881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	28	457	0	ENST00000257566.3:c.125C>T	p.Pro42Leu	p.P42L	ENST00000257566	NM_016569.3	42	cCc/cTc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021260-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	109	552	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0021249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	143	860	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0021249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	247	911	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48573584	48573584	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	112	552	0	ENST00000342988.3:c.170del	p.Leu57Ter	p.L57*	ENST00000342988	NM_005359.5	56	tcT/tc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971032	21971038	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCGC	GCATCGC	-			P-0021249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	150	636	0	ENST00000304494.5:c.320_326del	p.Arg107ProfsTer37	p.R107Pfs*37	ENST00000304494	NM_000077.4	107	cGCGATGCc/cc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971032	21971038	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCGC	GCATCGC	-			P-0021249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	150	636	0	ENST00000304494.5:c.320_326del	p.Arg107ProfsTer37	p.R107Pfs*37	ENST00000304494	NM_000077.4	107	cGCGATGCc/cc																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971032	21971038	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCGC	GCATCGC	-			P-0021249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	150	636	0	ENST00000304494.5:c.320_326del	p.Arg107ProfsTer37	p.R107Pfs*37	ENST00000304494	NM_000077.4	107	cGCGATGCc/cc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	227	813	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	247	842	1	ENST00000269305.4:c.811G>A	p.Glu271Lys	p.E271K	ENST00000269305	NM_001126112.2	271	Gag/Aag																																												NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0021005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	146	726	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44833925	44833925	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	171	717	0	ENST00000377967.4:c.349C>T	p.Gln117Ter	p.Q117*	ENST00000377967	NM_021140.2	117	Cag/Tag																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5044473	5044473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	200	788	0	ENST00000381652.3:c.421G>A	p.Glu141Lys	p.E141K	ENST00000381652	NM_004972.3	141	Gaa/Aaa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27092990	27092999	+	frameshift_variant	Frame_Shift_Del	DEL	AGTTAACTCC	AGTTAACTCC	-			P-0021005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	123	504	0	ENST00000324856.7:c.2923_2932del	p.Leu975ProfsTer4	p.L975Pfs*4	ENST00000324856	NM_006015.4	974	aAGTTAACTCCa/aa																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2224282	2224282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	281	1004	0	ENST00000326181.6:c.1294C>G	p.Gln432Glu	p.Q432E	ENST00000326181	NM_032271.2	432	Cag/Gag																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41523655	41523656	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	240	882	0	ENST00000263253.7:c.1073dup	p.Asn358LysfsTer53	p.N358Kfs*53	ENST00000263253	NM_001429.3	357	-/A																																												NEWRECORD																																		
HIST1H3H	0	MSKCC	GRCh37	6	27778095	27778095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	242	818	0	ENST00000369163.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000369163	NM_003536.2	82	Gac/Aac																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0021004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	287	799	2	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49416417	49416417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	265	731	1	ENST00000301067.7:c.16294C>T	p.Arg5432Trp	p.R5432W	ENST00000301067	NM_003482.3	5432	Cgg/Tgg																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18544125	18544125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	127	581	0	ENST00000266497.5:c.1942G>C	p.Glu648Gln	p.E648Q	ENST00000266497		648	Gag/Cag																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49416115	49416115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	212	539	1	ENST00000301067.7:c.16360C>T	p.Arg5454Ter	p.R5454*	ENST00000301067	NM_003482.3	5454	Cga/Tga																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41240334	41240334	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			159	185	565	0	ENST00000379561.5:c.16C>T	p.Gln6Ter	p.Q6*	ENST00000379561	NM_002015.3	6	Cag/Tag																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209526	98209547	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCCTATTGCTAGGGCCAGA	GGGCCCTATTGCTAGGGCCAGA	-			P-0021004-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	18	639	0	ENST00000331920.6:c.3991_4012del	p.Ser1331AlafsTer34	p.S1331Afs*34	ENST00000331920	NM_000264.3	1331	TCTGGCCCTAGCAATAGGGCCCgc/gc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	291	373	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	179	666	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175876	112175876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	99	318	0	ENST00000257430.4:c.4585C>T	p.Gln1529Ter	p.Q1529*	ENST00000257430	NM_000038.5	1529	Cag/Tag																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28901639	28901639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	215	741	0	ENST00000282397.4:c.2756A>G	p.Asn919Ser	p.N919S	ENST00000282397	NM_002019.4	919	aAc/aGc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189456447	189456447	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	137	538	1	ENST00000264731.3:c.208C>T	p.Gln70Ter	p.Q70*	ENST00000264731	NM_003722.4	70	Cag/Tag																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15272140	15272140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	217	702	2	ENST00000263388.2:c.6299C>T	p.Ser2100Leu	p.S2100L	ENST00000263388	NM_000435.2	2100	tCg/tTg																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	247	664	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																												NEWRECORD																																		
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	132	421	1	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453185	140453185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	101	495	1	ENST00000288602.6:c.1750C>T	p.Leu584Phe	p.L584F	ENST00000288602	NM_004333.4	584	Ctt/Ttt																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88678351	88678351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	234	828	1	ENST00000360948.2:c.1185C>A	p.Phe395Leu	p.F395L	ENST00000360948	NM_001012338.2	395	ttC/ttA																																												NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27169586	27169586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	270	970	0	ENST00000380036.4:c.587G>A	p.Gly196Glu	p.G196E	ENST00000380036	NM_000459.3	196	gGa/gAa																																												NEWRECORD																																		
STK19	0	MSKCC	GRCh37	6	31940079	31940079	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	451	796	0	ENST00000375331.2:c.221G>A	p.Gly74Glu	p.G74E	ENST00000375331	NM_004197.1	74	gGa/gAa																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40747138	40747138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	207	706	1	ENST00000373198.4:c.2944C>T	p.Pro982Ser	p.P982S	ENST00000373198	NM_133170.3	982	Ccg/Tcg																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073905	8073905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	163	555	0	ENST00000377482.5:c.754G>A	p.Gly252Arg	p.G252R	ENST00000377482	NM_018948.3	252	Gga/Aga																																												NEWRECORD																																		
SESN2	0	MSKCC	GRCh37	1	28599252	28599252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	260	815	2	ENST00000253063.3:c.698C>T	p.Pro233Leu	p.P233L	ENST00000253063	NM_031459.4	233	cCc/cTc																																												NEWRECORD																																		
SESN2	0	MSKCC	GRCh37	1	28600656	28600656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	206	806	0	ENST00000253063.3:c.1007C>T	p.Thr336Ile	p.T336I	ENST00000253063	NM_031459.4	336	aCc/aTc																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43804352	43804352	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	221	715	0	ENST00000372470.3:c.352C>T	p.Gln118Ter	p.Q118*	ENST00000372470	NM_005373.2	118	Cag/Tag																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2156702	2156702	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	267	808	0	ENST00000434045.2:c.220T>G	p.Phe74Val	p.F74V	ENST00000434045	NM_001127598.1	74	Ttc/Gtc																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118344458	118344458	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	108	348	1	ENST00000534358.1:c.2584C>T	p.Arg862Ter	p.R862*	ENST00000534358	NM_005933.3	862	Cga/Tga																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119156149	119156149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	232	801	0	ENST00000264033.4:c.1814C>T	p.Ser605Phe	p.S605F	ENST00000264033	NM_005188.3	605	tCc/tTc																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4385234	4385234	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	215	725	1	ENST00000261254.3:c.259T>A	p.Phe87Ile	p.F87I	ENST00000261254	NM_001759.3	87	Ttc/Atc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133218855	133218855	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	252	841	0	ENST00000320574.5:c.5081T>A	p.Leu1694Gln	p.L1694Q	ENST00000320574	NM_006231.2	1694	cTg/cAg																																												NEWRECORD																																		
PDPK1	0	MSKCC	GRCh37	16	2636700	2636700	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	253	713	0	ENST00000342085.4:c.1149T>G	p.Phe383Leu	p.F383L	ENST00000342085	NM_002613.4	383	ttT/ttG																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72984477	72984477	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	275	884	0	ENST00000268489.5:c.3107A>G	p.Asn1036Ser	p.N1036S	ENST00000268489	NM_006885.3	1036	aAc/aGc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11144107	11144107	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	279	908	0	ENST00000344626.4:c.3688C>T	p.Gln1230Ter	p.Q1230*	ENST00000344626	NM_003072.3	1230	Cag/Tag																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47657037	47657037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	186	550	0	ENST00000233146.2:c.1233A>G	p.Ile411Met	p.I411M	ENST00000233146	NM_000251.2	411	atA/atG																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212989590	212989590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	146	532	0	ENST00000342788.4:c.121G>A	p.Asp41Asn	p.D41N	ENST00000342788	NM_005235.2	41	Gac/Aac																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41101026	41101039	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTCTGGATGACC	AGGTCTGGATGACC	-			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	228	763	0	ENST00000373198.4:c.1317_1330del	p.Glu439AspfsTer23	p.E439Dfs*23	ENST00000373198	NM_133170.3	439	gaGGTCATCCAGACCTcc/gacc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134967267	134967267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	190	803	0	ENST00000398015.3:c.2606C>T	p.Pro869Leu	p.P869L	ENST00000398015	NM_004441.4	869	cCc/cTc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189607208	189607209	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	255	1047	3	ENST00000264731.3:c.1587_1588delinsTA	p.Ser530Thr	p.S530T	ENST00000264731	NM_003722.4	529	ctCTcc/ctTAcc																																												NEWRECORD																																		
WHSC1	0	MSKCC	GRCh37	4	1941489	1941489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	155	562	0	ENST00000382891.5:c.1865C>T	p.Ser622Phe	p.S622F	ENST00000382891	NM_133335.3	622	tCc/tTc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55972011	55972011	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	178	672	0	ENST00000263923.4:c.1633T>G	p.Phe545Val	p.F545V	ENST00000263923	NM_002253.2	545	Ttc/Gtc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117662371	117662371	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	213	717	0	ENST00000368508.3:c.5006A>G	p.Asn1669Ser	p.N1669S	ENST00000368508	NM_002944.2	1669	aAc/aGc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117706938	117706938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	240	813	0	ENST00000368508.3:c.2212G>A	p.Glu738Lys	p.E738K	ENST00000368508	NM_002944.2	738	Gag/Aag																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2963963	2963963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	254	925	0	ENST00000396946.4:c.1844C>T	p.Ser615Phe	p.S615F	ENST00000396946	NM_032415.4	615	tCc/tTc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55240696	55240696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	313	997	2	ENST00000275493.2:c.1940C>T	p.Ala647Val	p.A647V	ENST00000275493	NM_005228.3	647	gCc/gTc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106519997	106519997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	118	506	0	ENST00000359195.3:c.2425A>G	p.Lys809Glu	p.K809E	ENST00000359195	NM_002649.2	809	Aaa/Gaa																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	69104594	69104594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	256	852	0	ENST00000288368.4:c.4438G>A	p.Asp1480Asn	p.D1480N	ENST00000288368	NM_024870.2	1480	Gat/Aat																																												NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27169552	27169552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	264	973	1	ENST00000380036.4:c.553G>A	p.Asp185Asn	p.D185N	ENST00000380036	NM_000459.3	185	Gat/Aat																																												NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27209136	27209136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	227	763	0	ENST00000380036.4:c.2593G>A	p.Asp865Asn	p.D865N	ENST00000380036	NM_000459.3	865	Gat/Aat																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593613	55593614	+	missense_variant	Missense_Mutation	DNP	TT	TT	AG			P-0021296-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1014	395	760	1	ENST00000288135.5:c.1679_1680delinsAG	p.Val560Glu	p.V560E	ENST00000288135	NM_000222.2	560	gTT/gAG																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	164	582	1				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0021006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	572	546	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29553582	29553582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	39	265	0	ENST00000358273.4:c.2131C>A	p.Arg711Ser	p.R711S	ENST00000358273	NM_001042492.2	711	Cgc/Agc																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178096052	178096052	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	141	417	0	ENST00000397062.3:c.1279G>C	p.Glu427Gln	p.E427Q	ENST00000397062	NM_006164.4	427	Gag/Cag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44923055	44923055	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021006-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	209	593	0	ENST00000377967.4:c.1917del	p.Thr640LeufsTer51	p.T640Lfs*51	ENST00000377967	NM_021140.2	639	tCc/tc																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021253-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	70	720	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			89	487	916	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0021033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			359	154	767	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174885	112174886	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0021033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			192	205	490	0	ENST00000257430.4:c.3595_3596del	p.Lys1199GlufsTer8	p.K1199Efs*8	ENST00000257430	NM_000038.5	1198	tcAAag/tcag																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	68995569	68995569	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			549	226	893	1	ENST00000288368.4:c.1973C>A	p.Ser658Ter	p.S658*	ENST00000288368	NM_024870.2	658	tCg/tAg																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10305575	10305575	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0021033-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			506	28	737	0	ENST00000340748.4:c.1A>T	p.Met1?	p.M1?	ENST00000340748		1	Atg/Ttg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099403	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAGCAA	-			P-0021299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	56	354	0	ENST00000346085.5:c.369_392del	p.Gln124_Gln131del	p.Q124_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAA/-																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89805599	89805599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	189	864	1	ENST00000389301.3:c.4109C>A	p.Ala1370Asp	p.A1370D	ENST00000389301	NM_000135.2	1370	gCt/gAt																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151845959	151845959	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	172	841	3	ENST00000262189.6:c.13053delA	p.Lys4351AsnfsTer5	p.K4351Nfs*5	ENST00000262189	NM_170606.2	4351	aaA/aa																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151856070	151856070	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	211	719	2	ENST00000262189.6:c.11548C>T	p.Arg3850Ter	p.R3850*	ENST00000262189	NM_170606.2	3850	Cga/Tga																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29004254	29004254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143093353		P-0021254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	94	562	0	ENST00000282397.4:c.1039G>A	p.Val347Ile	p.V347I	ENST00000282397	NM_002019.4	347	Gta/Ata																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108202233	108202233	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	75	755	0	ENST00000278616.4:c.7578A>T	p.Arg2526Ser	p.R2526S	ENST00000278616	NM_000051.3	2526	agA/agT																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108206669	108206669	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	96	613	0	ENST00000278616.4:c.8249T>A	p.Leu2750Ter	p.L2750*	ENST00000278616	NM_000051.3	2750	tTa/tAa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32912436	32912437	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	33	471	0	ENST00000380152.3:c.3947dup	p.Asn1316LysfsTer3	p.N1316Kfs*3	ENST00000380152		1315	aga/agAa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	620	588	2				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	801	785	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105667	27105667	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	274	342	0	ENST00000324856.7:c.5278G>T	p.Glu1760Ter	p.E1760*	ENST00000324856	NM_006015.4	1760	Gag/Tag																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50444289	50444289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	257	425	0	ENST00000331340.3:c.219G>A	p.Met73Ile	p.M73I	ENST00000331340	NM_006060.4	73	atG/atA																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9784896	9784896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	402	703	0	ENST00000377346.4:c.2899C>A	p.Leu967Met	p.L967M	ENST00000377346	NM_005026.3	967	Ctg/Atg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105736	27105736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	216	241	0	ENST00000324856.7:c.5347G>A	p.Glu1783Lys	p.E1783K	ENST00000324856	NM_006015.4	1783	Gaa/Aaa																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43608374	43608374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1221	134	846	0	ENST00000355710.3:c.1722G>C	p.Glu574Asp	p.E574D	ENST00000355710	NM_020975.4	574	gaG/gaC																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108129725	108129725	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	315	470	0	ENST00000278616.4:c.2390del	p.Lys797ArgfsTer11	p.K797Rfs*11	ENST00000278616	NM_000051.3	797	Aag/ag																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118342550	118342550	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	135	224	1	ENST00000534358.1:c.678del	p.Thr227ProfsTer5	p.T227Pfs*5	ENST00000534358	NM_005933.3	226	Ccc/cc																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49431734	49431734	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	279	639	0	ENST00000301067.7:c.9405del	p.Ile3136LeufsTer6	p.I3136Lfs*6	ENST00000301067	NM_003482.3	3135	acC/ac																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49433995	49433995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	104	696	0	ENST00000301067.7:c.7558C>T	p.Arg2520Trp	p.R2520W	ENST00000301067	NM_003482.3	2520	Cgg/Tgg																																												NEWRECORD																																		
SOCS1	0	MSKCC	GRCh37	16	11349046	11349046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	187	471	1	ENST00000332029.2:c.290C>T	p.Pro97Leu	p.P97L	ENST00000332029	NM_003745.1	97	cCc/cTc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48573505	48573505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	87	319	0	ENST00000342988.3:c.89G>A	p.Gly30Glu	p.G30E	ENST00000342988	NM_005359.5	30	gGa/gAa																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30143273	30143273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	354	653	0	ENST00000389048.3:c.253C>T	p.Pro85Ser	p.P85S	ENST00000389048	NM_004304.4	85	Ccc/Tcc																																												NEWRECORD																																		
EPCAM	0	MSKCC	GRCh37	2	47601108	47601108	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	74	505	0	ENST00000263735.4:c.346T>C	p.Cys116Arg	p.C116R	ENST00000263735	NM_002354.2	116	Tgc/Cgc																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138407812	138407812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	281	327	0	ENST00000289153.2:c.2041G>C	p.Glu681Gln	p.E681Q	ENST00000289153	NM_006219.2	681	Gaa/Caa																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142261533	142261533	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs149008479		P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	260	413	0	ENST00000350721.4:c.3424A>G	p.Ser1142Gly	p.S1142G	ENST00000350721	NM_001184.3	1142	Agt/Ggt																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44919378	44919382	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGC	GGTGC	-			P-0021255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	229	182	0	ENST00000377967.4:c.1306_1310del	p.Gly436HisfsTer10	p.G436Hfs*10	ENST00000377967	NM_021140.2	436	GGTGCc/c																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0021302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	77	800	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	124	733	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	3013	878	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	2507	782	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	360	821	0	ENST00000269305.4:c.993G>T	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caT																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120460296	120460296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	64	765	1	ENST00000256646.2:c.6019G>A	p.Asp2007Asn	p.D2007N	ENST00000256646	NM_024408.3	2007	Gac/Aac																																												NEWRECORD																																		
SUFU	0	MSKCC	GRCh37	10	104375118	104375118	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	39	853	0	ENST00000369902.3:c.1116A>T	p.Lys372Asn	p.K372N	ENST00000369902	NM_016169.3	372	aaA/aaT																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65543330	65543330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	62	723	1	ENST00000358664.4:c.347C>T	p.Pro116Leu	p.P116L	ENST00000358664	NM_002382.4	116	cCc/cTc																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176523142	176523142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	31	959	1	ENST00000292408.4:c.1906G>A	p.Gly636Ser	p.G636S	ENST00000292408	NM_213647.1	636	Ggc/Agc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249092	55249092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3478	304	904	0	ENST00000275493.2:c.2390G>C	p.Cys797Ser	p.C797S	ENST00000275493	NM_005228.3	797	tGc/tCc																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151882692	151882692	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	31	554	0	ENST00000262189.6:c.5033T>C	p.Ile1678Thr	p.I1678T	ENST00000262189	NM_170606.2	1678	aTt/aCt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	397	919	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11298470	11298470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	73	627	0	ENST00000361445.4:c.1991T>A	p.Ile664Lys	p.I664K	ENST00000361445	NM_004958.3	664	aTa/aAa																																												NEWRECORD																																		
SDHB	0	MSKCC	GRCh37	1	17355187	17355187	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	57	873	0	ENST00000375499.3:c.331C>G	p.Leu111Val	p.L111V	ENST00000375499	NM_003000.2	111	Cta/Gta																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108204651	108204651	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	68	645	0	ENST00000278616.4:c.7966C>A	p.Leu2656Ile	p.L2656I	ENST00000278616	NM_000051.3	2656	Ctt/Att																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121435421	121435422	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0021303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	138	900	3	ENST00000257555.6:c.1454_1455delinsAG	p.Thr485Lys	p.T485K	ENST00000257555		485	aCC/aAG																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55141101	55141101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	112	726	1	ENST00000257290.5:c.1747G>A	p.Asp583Asn	p.D583N	ENST00000257290	NM_006206.4	583	Gac/Aac																																												NEWRECORD																																		
DROSHA	0	MSKCC	GRCh37	5	31526508	31526508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	256	1147	1	ENST00000344624.3:c.532C>T	p.Pro178Ser	p.P178S	ENST00000344624		178	Cca/Tca																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8389296	8389296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	42	1013	1	ENST00000356435.5:c.4322G>T	p.Arg1441Ile	p.R1441I	ENST00000356435		1441	aGa/aTa																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133760304	133760304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	38	663	0	ENST00000318560.5:c.2627G>A	p.Arg876Lys	p.R876K	ENST00000318560	NM_005157.4	876	aGg/aAg																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47430338	47430338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	85	931	1	ENST00000377045.4:c.1613G>A	p.Cys538Tyr	p.C538Y	ENST00000377045	NM_001654.4	538	tGc/tAc																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48650434	48650434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021303-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	76	1026	1	ENST00000376670.3:c.404C>A	p.Thr135Asn	p.T135N	ENST00000376670	NM_002049.3	135	aCt/aAt																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0021001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	127	660	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610285	10610285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	334	834	2	ENST00000171111.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000171111	NM_203500.1	142	aCg/aTg																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78430573	78430580	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTGTAA	TCCTGTAA	-			P-0021001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	224	548	0	ENST00000370768.2:c.710_717del	p.Ile237ArgfsTer4	p.I237Rfs*4	ENST00000370768	NM_003902.3	237	aTTACAGGA/a																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602390	10602390	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	195	870	1	ENST00000171111.5:c.1188C>A	p.Tyr396Ter	p.Y396*	ENST00000171111	NM_203500.1	396	taC/taA																																												NEWRECORD																																		
HIST1H3J	0	MSKCC	GRCh37	6	27858384	27858384	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021001-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	246	628	0	ENST00000359303.2:c.187A>C	p.Ile63Leu	p.I63L	ENST00000359303	NM_003535.2	63	Atc/Ctc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	230	823	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	141	388	0	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																													NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9777677	9777677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145191685		P-0021259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	179	728	2	ENST00000377346.4:c.1013G>A	p.Arg338Gln	p.R338Q	ENST00000377346	NM_005026.3	338	cGg/cAg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	123	772	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	74	753	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	182	465	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	276	961	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89351412	89351412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	141	838	0	ENST00000301030.4:c.1538C>A	p.Ser513Tyr	p.S513Y	ENST00000301030	NM_001256183.1	513	tCc/tAc																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38991161	38991161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	94	748	0	ENST00000357387.3:c.473C>T	p.Ala158Val	p.A158V	ENST00000357387	NM_152756.3	158	gCt/gTt																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	68950518	68950518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021232-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	78	590	1	ENST00000288368.4:c.830G>T	p.Arg277Ile	p.R277I	ENST00000288368	NM_024870.2	277	aGa/aTa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	131	673	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0021218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	31	488	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33286830	33286830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	166	648	0	ENST00000374542.5:c.2107C>T	p.Pro703Ser	p.P703S	ENST00000374542	NM_001141970.1	703	Cca/Tca																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151877199	151877200	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021218-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	179	572	0	ENST00000262189.6:c.7161dup	p.Arg2388ThrfsTer2	p.R2388Tfs*2	ENST00000262189	NM_170606.2	2387	-/A																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	28	822	0	ENST00000330062.3:c.514A>G	p.Arg172Gly	p.R172G	ENST00000330062	NM_002168.2	172	Agg/Ggg																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32417887	32417887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			780	60	869	0	ENST00000332351.3:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000332351	NM_024426.4	389	Cgc/Tgc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52637684	52637684	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021233-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	37	977	0	ENST00000394830.3:c.2632G>T	p.Glu878Ter	p.E878*	ENST00000394830	NM_018313.4	878	Gaa/Taa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	220	657	1				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49444000	49444000	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021234-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	292	852	8	ENST00000301067.7:c.3371del	p.Pro1124LeufsTer40	p.P1124Lfs*40	ENST00000301067	NM_003482.3	1124	cCt/ct																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	150	935	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
EIF1AX	0	MSKCC	GRCh37	X	20159748	20159748	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	57	648	0	ENST00000379607.5:c.11A>G	p.Asn4Ser	p.N4S	ENST00000379607	NM_001412.3	4	aAt/aGt																																												NEWRECORD																																		
CYSLTR2	0	MSKCC	GRCh37	13	49281768	49281768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148425155		P-0021236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	105	902	1	ENST00000282018.3:c.815C>T	p.Thr272Met	p.T272M	ENST00000282018	NM_020377.2	272	aCg/aTg																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31021451	31021451	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	44	799	0	ENST00000375687.4:c.1450G>T	p.Glu484Ter	p.E484*	ENST00000375687	NM_015338.5	484	Gag/Tag																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41739657	41739657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	128	1105	0	ENST00000242208.4:c.316G>T	p.Asp106Tyr	p.D106Y	ENST00000242208	NM_002192.2	106	Gac/Tac																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0021235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	194	784	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0021235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	107	438	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0021235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	107	438	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41573882	41573882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	213	915	1	ENST00000263253.7:c.6167G>A	p.Arg2056Gln	p.R2056Q	ENST00000263253	NM_001429.3	2056	cGg/cAg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29004254	29004254	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143093353		P-0021240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	108	763	3	ENST00000282397.4:c.1039G>A	p.Val347Ile	p.V347I	ENST00000282397	NM_002019.4	347	Gta/Ata																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578433	7578434	+	stop_gained	Nonsense_Mutation	INS	-	-	ACTGCT			P-0021240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	379	1010	0	ENST00000269305.4:c.491_496dup	p.Gln165_Ser166insTer	p.Q165_S166ins*	ENST00000269305	NM_001126112.2	166	tca/tAGCAGTca																																												NEWRECORD																																		
FAM175A	0	MSKCC	GRCh37	4	84383862	84383863	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0021240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	117	1043	0	ENST00000321945.7:c.989_990del	p.Thr330ArgfsTer4	p.T330Rfs*4	ENST00000321945	NM_139076.2	330	aCT/a																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117862980	117862981	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0021240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	153	863	0	ENST00000297338.2:c.1496_1497del	p.Ile499ThrfsTer37	p.I499Tfs*37	ENST00000297338	NM_006265.2	499	aTA/a																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86628437	86628437	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	62	504	0	ENST00000274376.6:c.808del	p.Tyr270ThrfsTer9	p.Y270Tfs*9	ENST00000274376	NM_002890.2	269	cTt/ct																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86685322	86685326	+	frameshift_variant	Frame_Shift_Del	DEL	GTAAT	GTAAT	-			P-0021237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	42	248	0	ENST00000274376.6:c.3039_3043del	p.Ser1013ArgfsTer31	p.S1013Rfs*31	ENST00000274376	NM_002890.2	1013	aGTAAT/a																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288616	33288621	+	inframe_deletion	In_Frame_Del	DEL	CATGAG	CATGAG	-			P-0021222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	405	642	0	ENST00000374542.5:c.931_936del	p.Leu311_Met312del	p.L311_M312del	ENST00000374542	NM_001141970.1	311	CTCATG/-																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	105	916	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207076	1207077	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	351	944	0	ENST00000326873.7:c.169dup	p.Glu57GlyfsTer106	p.E57Gfs*106	ENST00000326873	NM_000455.4	55	ctg/ctGg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2226424	2226424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	666	941	0	ENST00000398665.3:c.3904G>T	p.Gly1302Trp	p.G1302W	ENST00000398665	NM_032482.2	1302	Ggg/Tgg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47058697	47058709	+	frameshift_variant	Frame_Shift_Del	DEL	AGGATTCTTACAG	AGGATTCTTACAG	-			P-0021224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	48	852	0	ENST00000409792.3:c.7569_7581del	p.Tyr2523Ter	p.Y2523*	ENST00000409792	NM_014159.6	2523	taCTGTAAGAATCCT/ta																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55968622	55968622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	46	1035	0	ENST00000263923.4:c.2041G>A	p.Gly681Arg	p.G681R	ENST00000263923	NM_002253.2	681	Ggg/Agg																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180048793	180048793	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	172	989	1	ENST00000261937.6:c.1769G>A	p.Trp590Ter	p.W590*	ENST00000261937	NM_182925.4	590	tGg/tAg																																												NEWRECORD																																		
TAP2	0	MSKCC	GRCh37	6	32797769	32797769	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78328107		P-0021238-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	47	1009	3	ENST00000374899.4:c.1733C>T	p.Ala578Val	p.A578V	ENST00000374899	NM_018833.2	578	gCg/gTg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108216588	108216592	+	protein_altering_variant	In_Frame_Del	DEL	TTGAG	TTGAG	AT			P-0021239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	101	601	2	ENST00000278616.4:c.8537_8541delinsAT	p.Phe2846_Glu2847delinsTyr	p.F2846_E2847delinsY	ENST00000278616	NM_000051.3	2846	tTTGAG/tAT																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42021492	42021492	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	106	933	0	ENST00000219905.7:c.3788C>A	p.Ser1263Ter	p.S1263*	ENST00000219905	NM_001164273.1	1263	tCa/tAa																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68846086	68846086	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	101	903	2	ENST00000261769.5:c.1057G>T	p.Glu353Ter	p.E353*	ENST00000261769	NM_004360.3	353	Gag/Tag																																												NEWRECORD																																		
RHEB	0	MSKCC	GRCh37	7	151168677	151168751	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAATCACTTCAAAACTATAAAACAAAAAGTATAAATTAGACATCCATTTTAATGTTGAAGTTTTTAAATGTATG	TTAATCACTTCAAAACTATAAAACAAAAAGTATAAATTAGACATCCATTTTAATGTTGAAGTTTTTAAATGTATG	-			P-0021239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	71	589	0	ENST00000262187.5:c.276-60_290del		p.X92_splice	ENST00000262187	NM_005614.3	92																																													NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115947	8115951	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAC	ACCAC	-			P-0021242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	88	636	0	ENST00000346208.3:c.1298_1302del	p.His433ProfsTer72	p.H433Pfs*72	ENST00000346208		431	ggACCACac/ggac																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11984779	11984783	+	frameshift_variant	Frame_Shift_Del	DEL	GGACG	GGACG	-			P-0021242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	73	625	0	ENST00000353533.5:c.325_329del	p.Gly109ArgfsTer21	p.G109Rfs*21	ENST00000353533	NM_003010.3	109	GGACGa/a																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39933889	39933889	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	213	906	0	ENST00000378444.4:c.710T>A	p.Val237Asp	p.V237D	ENST00000378444	NM_001123385.1	237	gTc/gAc																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	35	621	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	150	931	1	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248768	212248768	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	38	410	0	ENST00000342788.4:c.3499G>T	p.Glu1167Ter	p.E1167*	ENST00000342788	NM_005235.2	1167	Gag/Tag																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108115595	108115595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	112	911	0	ENST00000278616.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000278616	NM_000051.3	248	cGa/cTa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41988819	41988820	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	97	888	0	ENST00000219905.7:c.1611_1612del	p.Arg538SerfsTer17	p.R538Sfs*17	ENST00000219905	NM_001164273.1	537	ctCAga/ctga																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25463286	25463286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	58	684	0	ENST00000264709.3:c.2207G>T	p.Arg736Leu	p.R736L	ENST00000264709	NM_175629.2	736	cGc/cTc																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215593408	215593408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	18	375	0	ENST00000260947.4:c.2326G>C	p.Asp776His	p.D776H	ENST00000260947	NM_000465.2	776	Gac/Cac																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55594016	55594016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	49	694	2	ENST00000288135.5:c.1802G>T	p.Gly601Val	p.G601V	ENST00000288135	NM_000222.2	601	gGg/gTg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47038844	47038844	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	92	968	0	ENST00000329236.7:c.622del	p.Gln208LysfsTer23	p.Q208Kfs*23	ENST00000329236	NM_001204466.1	207	tCc/tc																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123256174	123256174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	24	858	7	ENST00000358487.5:c.1735C>T	p.Arg579Trp	p.R579W	ENST00000358487	NM_000141.4	579	Cgg/Tgg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48603007	48603007	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	20	514	0	ENST00000342988.3:c.1309-1G>T		p.X437_splice	ENST00000342988	NM_005359.5	437																																													NEWRECORD																																		
ERF	0	MSKCC	GRCh37	19	42753432	42753432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			285	63	856	0	ENST00000222329.4:c.832A>G	p.Thr278Ala	p.T278A	ENST00000222329	NM_006494.2	278	Act/Gct																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31022629	31022629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	77	953	1	ENST00000375687.4:c.2114A>G	p.Glu705Gly	p.E705G	ENST00000375687	NM_015338.5	705	gAg/gGg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38958606	38958606	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	15	414	0	ENST00000357387.3:c.2359C>G	p.Leu787Val	p.L787V	ENST00000357387	NM_152756.3	787	Ctc/Gtc																																												NEWRECORD																																		
TRAF2	0	MSKCC	GRCh37	9	139818376	139818376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	14	1021	2	ENST00000247668.2:c.1211G>A	p.Gly404Glu	p.G404E	ENST00000247668	NM_021138.3	404	gGa/gAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0021155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			68	365	818	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																													NEWRECORD																																		
CSDE1	0	MSKCC	GRCh37	1	115277091	115277091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	183	838	0	ENST00000438362.2:c.692G>T	p.Arg231Leu	p.R231L	ENST00000438362	NM_001242891.1	231	cGc/cTc																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17742897	17742897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	323	893	0	ENST00000250003.3:c.805C>A	p.Leu269Ile	p.L269I	ENST00000250003	NM_002478.4	269	Ctc/Atc																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94224028	94224028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	375	836	2	ENST00000323929.3:c.124G>A	p.Glu42Lys	p.E42K	ENST00000323929	NM_005591.3	42	Gaa/Aaa																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112201	115112201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			420	339	795	0	ENST00000257566.3:c.1539C>A	p.Phe513Leu	p.F513L	ENST00000257566	NM_016569.3	513	ttC/ttA																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26959385	26959385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	255	583	0	ENST00000381527.3:c.552G>C	p.Leu184Phe	p.L184F	ENST00000381527	NM_001260.1	184	ttG/ttC																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	161771155	161771155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	350	813	0	ENST00000366898.1:c.1374G>T	p.Met458Ile	p.M458I	ENST00000366898	NM_004562.2	458	atG/atT																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81355246	81355246	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	110	464	0	ENST00000222390.5:c.1128C>A	p.Tyr376Ter	p.Y376*	ENST00000222390	NM_000601.4	376	taC/taA																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90995038	90995038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021155-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	121	601	0	ENST00000265433.3:c.83G>C	p.Arg28Thr	p.R28T	ENST00000265433	NM_002485.4	28	aGg/aCg																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0021062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	47	857	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	35	736	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																												NEWRECORD																																		
EZH1	0	MSKCC	GRCh37	17	40865275	40865277	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0021062-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	42	862	0	ENST00000428826.2:c.1154_1156del	p.Glu385del	p.E385del	ENST00000428826		385	gAAGga/gga																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41419840	41419840	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	34	571	1	ENST00000373198.4:c.481T>C	p.Tyr161His	p.Y161H	ENST00000373198	NM_133170.3	161	Tat/Cat																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876269	35876269	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	161	719	0	ENST00000303115.3:c.1061T>C	p.Val354Ala	p.V354A	ENST00000303115	NM_002185.3	354	gTa/gCa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938161	76938161	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021061-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			227	123	529	0	ENST00000373344.5:c.2587C>T	p.Gln863Ter	p.Q863*	ENST00000373344	NM_000489.3	863	Caa/Taa																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	123	487	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	253	899	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101904887	101904888	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	181	626	0	ENST00000374994.4:c.878dup	p.Asn293LysfsTer40	p.N293Kfs*40	ENST00000374994	NM_004612.2	292	tta/ttAa																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1803470	1803470	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0021066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	186	865	0	ENST00000260795.2:c.739G>C	p.Glu247Gln	p.E247Q	ENST00000260795		247	Gag/Cag																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47044713	47044713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021066-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	239	486	2	ENST00000329236.7:c.1879G>A	p.Glu627Lys	p.E627K	ENST00000329236	NM_001204466.1	627	Gag/Aag																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46279873	46279873	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	54	861	1	ENST00000371998.3:c.3799C>T	p.Gln1267Ter	p.Q1267*	ENST00000371998		1267	Cag/Tag																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56184140	56184140	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021152-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	136	672	0	ENST00000399503.3:c.4345T>A	p.Trp1449Arg	p.W1449R	ENST00000399503	NM_005921.1	1449	Tgg/Agg																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95566250	95566250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	95	554	0	ENST00000343455.3:c.4073G>A	p.Arg1358His	p.R1358H	ENST00000343455	NM_177438.2	1358	cGc/cAc																																												NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1220370	1220370	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	212	733	1	ENST00000326873.7:c.465-2A>T		p.X155_splice	ENST00000326873	NM_000455.4	155																																													NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	260	733	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108106434	108106434	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	78	289	0	ENST00000278616.4:c.369T>G	p.Tyr123Ter	p.Y123*	ENST00000278616	NM_000051.3	123	taT/taG																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913987	32913987	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs138489917		P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	49	543	0	ENST00000380152.3:c.5495C>G	p.Ser1832Cys	p.S1832C	ENST00000380152		1832	tCt/tGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7573992	7573992	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	281	817	0	ENST00000269305.4:c.1035del	p.Asn345LysfsTer25	p.N345Kfs*25	ENST00000269305	NM_001126112.2	345	aaT/aa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47058724	47058727	+	frameshift_variant	Frame_Shift_Del	DEL	ATTC	ATTC	-			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	95	572	0	ENST00000409792.3:c.7551_7554del	p.Met2517IlefsTer4	p.M2517Ifs*4	ENST00000409792	NM_014159.6	2517	atGAAT/at																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2963978	2963978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	327	753	0	ENST00000396946.4:c.1829C>A	p.Ser610Tyr	p.S610Y	ENST00000396946	NM_032415.4	610	tCc/tAc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47041002	47041002	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	234	775	0	ENST00000329236.7:c.1298C>G	p.Ser433Ter	p.S433*	ENST00000329236	NM_001204466.1	433	tCa/tGa																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142275290	142275293	+	protein_altering_variant	In_Frame_Del	DEL	ACAA	ACAA	T			P-0021022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	168	649	0	ENST00000350721.4:c.2010_2013delinsA	p.Ser670_Cys671delinsArg	p.S670_C671delinsR	ENST00000350721	NM_001184.3	670	agTTGT/agA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	452	914	4	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30691802	30691802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	182	807	0	ENST00000359013.4:c.379C>T	p.His127Tyr	p.H127Y	ENST00000359013	NM_001024847.2	127	Cat/Tat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	79	769	1	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457327	67457327	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	42	717	0	ENST00000327367.4:c.301C>G	p.His101Asp	p.H101D	ENST00000327367	NM_005902.3	101	Cac/Gac																																												NEWRECORD																																		
MALT1	0	MSKCC	GRCh37	18	56409172	56409172	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	19	500	0	ENST00000348428.3:c.1679T>C	p.Leu560Pro	p.L560P	ENST00000348428	NM_006785.3	560	cTt/cCt																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99172103	99172103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	46	596	1	ENST00000074304.5:c.1669G>A	p.Glu557Lys	p.E557K	ENST00000074304	NM_001134224.1	557	Gag/Aag																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56180558	56180564	+	frameshift_variant	Frame_Shift_Del	DEL	GAATGAT	GAATGAT	-			P-0021150-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	23	425	0	ENST00000399503.3:c.3889_3895del	p.Met1297AlafsTer3	p.M1297Afs*3	ENST00000399503	NM_005921.1	1296	aGAATGATg/ag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	279	1047	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0021073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	263	534	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0021073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	155	713	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																												NEWRECORD																																		
H3F3B	0	MSKCC	GRCh37	17	73775128	73775128	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	201	766	1	ENST00000254810.4:c.128G>A	p.Arg43Lys	p.R43K	ENST00000254810	NM_005324.3	43	aGg/aAg																																												NEWRECORD																																		
TAP2	0	MSKCC	GRCh37	6	32797817	32797817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	236	869	0	ENST00000374899.4:c.1685del	p.Asn562ThrfsTer15	p.N562Tfs*15	ENST00000374899	NM_018833.2	562	aAc/ac																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	110	434	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	85	658	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																												NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933400	39933400	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	53	558	0	ENST00000378444.4:c.1199del	p.Gly400AlafsTer42	p.G400Afs*42	ENST00000378444	NM_001123385.1	400	gGc/gc																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56857716	56857716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	42	585	0	ENST00000308159.5:c.752G>A	p.Arg251His	p.R251H	ENST00000308159	NM_014669.4	251	cGc/cAc																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190719463	190719463	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	22	331	0	ENST00000441310.2:c.1465A>T	p.Asn489Tyr	p.N489Y	ENST00000441310	NM_000534.4	489	Aac/Tac																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41419977	41419977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	60	532	0	ENST00000373198.4:c.344C>A	p.Ser115Tyr	p.S115Y	ENST00000373198	NM_133170.3	115	tCc/tAc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164883	47164883	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	28	316	0	ENST00000409792.3:c.1243A>G	p.Thr415Ala	p.T415A	ENST00000409792	NM_014159.6	415	Act/Gct																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971153	21971153	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	61	524	0	ENST00000304494.5:c.205del	p.Glu69SerfsTer77	p.E69Sfs*77	ENST00000304494	NM_000077.4	69	Gag/ag																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971153	21971153	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	61	524	0	ENST00000304494.5:c.205del	p.Glu69SerfsTer77	p.E69Sfs*77	ENST00000304494	NM_000077.4	69	Gag/ag																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971153	21971153	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	61	524	0	ENST00000304494.5:c.205del	p.Glu69SerfsTer77	p.E69Sfs*77	ENST00000304494	NM_000077.4	69	Gag/ag																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48652222	48652222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	72	594	0	ENST00000376670.3:c.893G>T	p.Arg298Leu	p.R298L	ENST00000376670	NM_002049.3	298	cGg/cTg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70357421	70357421	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021069-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	72	769	0	ENST00000374080.3:c.5762T>A	p.Met1921Lys	p.M1921K	ENST00000374080		1921	aTg/aAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	208	717	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10599990	10599990	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021072-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	101	853	0	ENST00000171111.5:c.1586A>T	p.Asp529Val	p.D529V	ENST00000171111	NM_203500.1	529	gAc/gTc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	129	370	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	128	621	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	78	384	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12870985	12870986	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	59	345	0	ENST00000228872.4:c.215dupG	p.Lys73GlnfsTer52	p.K73Qfs*52	ENST00000228872	NM_004064.3	71	gag/gaGg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156834161	156834169	+	inframe_deletion	In_Frame_Del	DEL	GCAGCATCT	GCAGCATCT	-			P-0021148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1246	67	727	0	ENST00000524377.1:c.238_246del	p.Gln80_Leu82del	p.Q80_L82del	ENST00000524377	NM_002529.3	76	caGCAGCATCTg/cag																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103515129	103515129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021148-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	24	271	0	ENST00000355739.4:c.1630G>A	p.Glu544Lys	p.E544K	ENST00000355739	NM_000123.3	544	Gag/Aag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	51	843	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0021071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	124	1029	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2211161	2211161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021071-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	92	891	1	ENST00000398665.3:c.1415C>A	p.Pro472His	p.P472H	ENST00000398665	NM_032482.2	472	cCc/cAc																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41726683	41726815	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGAGCTCGCGGACAGCACCCAGACCCAGGTGCCCCTGGGTGAGGATGAACAGGATGACTGGATAGTGGTCAGCCAGCTCAGGTGTGTGGCCACATCCCCGAATCCCACTCCCACCTCCGTCACACAGAGGGCA	GGAGCTCGCGGACAGCACCCAGACCCAGGTGCCCCTGGGTGAGGATGAACAGGATGACTGGATAGTGGTCAGCCAGCTCAGGTGTGTGGCCACATCCCCGAATCCCACTCCCACCTCCGTCACACAGAGGGCA	-			P-0021028-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	110	895	0	ENST00000301178.4:c.229_308+53del		p.X77_splice	ENST00000301178	NM_021913.4	77																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	148	634	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579494	7579494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	233	1023	0	ENST00000269305.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000269305	NM_001126112.2	65	Aga/Tga																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53230892	53230892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	234	442	2	ENST00000375401.3:c.1901G>T	p.Arg634Leu	p.R634L	ENST00000375401	NM_004187.3	634	cGc/cTc																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	87	582	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	225628	225628	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	124	563	3	ENST00000264932.6:c.407A>T	p.Gln136Leu	p.Q136L	ENST00000264932	NM_004168.2	136	cAg/cTg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023355	27023356	+	stop_gained	Nonsense_Mutation	DNP	AC	AC	GA			P-0021059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	199	545	3	ENST00000324856.7:c.461_462delinsGA	p.Tyr154Ter	p.Y154*	ENST00000324856	NM_006015.4	154	tAC/tGA																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99467791	99467791	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	51	525	1	ENST00000268035.6:c.2660A>T	p.Lys887Met	p.K887M	ENST00000268035	NM_000875.3	887	aAg/aTg																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59858334	59858334	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	190	759	0	ENST00000259008.2:c.1661A>C	p.Gln554Pro	p.Q554P	ENST00000259008	NM_032043.2	554	cAg/cCg																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227661206	227661206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	192	964	0	ENST00000305123.5:c.2249A>G	p.Tyr750Cys	p.Y750C	ENST00000305123	NM_005544.2	750	tAc/tGc																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	224613	224613	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	122	458	0	ENST00000264932.6:c.289A>T	p.Arg97Trp	p.R97W	ENST00000264932	NM_004168.2	97	Agg/Tgg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8528660	8528660	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	127	626	0	ENST00000356435.5:c.472A>G	p.Thr158Ala	p.T158A	ENST00000356435		158	Act/Gct																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	238	811	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	313	848	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	167	579	2	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	182	337	0	ENST00000257430.4:c.4128T>G	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taG																																												NEWRECORD																																		
RRAGC	0	MSKCC	GRCh37	1	39321401	39321401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	193	678	2	ENST00000373001.3:c.620G>A	p.Gly207Glu	p.G207E	ENST00000373001	NM_022157.3	207	gGg/gAg																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142185227	142185227	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	208	772	0	ENST00000350721.4:c.6836A>C	p.Asn2279Thr	p.N2279T	ENST00000350721	NM_001184.3	2279	aAc/aCc																																												NEWRECORD																																		
WHSC1	0	MSKCC	GRCh37	4	1980613	1980613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	184	585	0	ENST00000382891.5:c.4075C>T	p.Arg1359Trp	p.R1359W	ENST00000382891	NM_133335.3	1359	Cgg/Tgg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66356358	66356358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	164	636	0	ENST00000273854.3:c.1139C>T	p.Pro380Leu	p.P380L	ENST00000273854	NM_004439.5	380	cCt/cTt																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67575562	67575562	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	133	362	0	ENST00000274335.5:c.634+1G>A		p.X212_splice	ENST00000274335		212																																													NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38273515	38273515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021153-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	42	952	1	ENST00000425967.3:c.1820G>T	p.Arg607Leu	p.R607L	ENST00000425967	NM_001174067.1	607	cGg/cTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	674	903	3	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2226926	2226926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	133	463	2	ENST00000398665.3:c.4406C>T	p.Pro1469Leu	p.P1469L	ENST00000398665	NM_032482.2	1469	cCg/cTg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49039454	49039454	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0021125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	408	718	0	ENST00000267163.4:c.2439T>G	p.Tyr813Ter	p.Y813*	ENST00000267163	NM_000321.2	813	taT/taG																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47162683	47162683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021125-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	117	640	0	ENST00000409792.3:c.3443C>G	p.Ser1148Cys	p.S1148C	ENST00000409792	NM_014159.6	1148	tCc/tGc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0021079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	225	387	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0021079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	499	551	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36211898	36211899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775294431		P-0021079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	242	971	0	ENST00000222270.7:c.1656dup	p.Lys553GlnfsTer46	p.K553Qfs*46	ENST00000222270	NM_014727.1	550	gac/gaCc																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	384	753	0	ENST00000301067.7:c.15536G>T	p.Arg5179Leu	p.R5179L	ENST00000301067	NM_003482.3	5179	cGt/cTt																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49423021	49423021	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0021079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	308	654	1	ENST00000301067.7:c.14076-2A>G		p.X4692_splice	ENST00000301067	NM_003482.3	4692																																													NEWRECORD																																		
SLX4	0	MSKCC	GRCh37	16	3640662	3640662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	444	907	0	ENST00000294008.3:c.2977G>C	p.Glu993Gln	p.E993Q	ENST00000294008	NM_032444.2	993	Gag/Cag																																												NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36216444	36216444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	247	980	0	ENST00000222270.7:c.3707C>T	p.Pro1236Leu	p.P1236L	ENST00000222270	NM_014727.1	1236	cCc/cTc																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40747846	40747846	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0021079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	318	690	0	ENST00000392038.2:c.572A>T	p.Lys191Met	p.K191M	ENST00000392038	NM_001626.4	191	aAg/aTg																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176665411	176665412	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	271	521	0	ENST00000439151.2:c.4096dup	p.Ala1366GlyfsTer2	p.A1366Gfs*2	ENST00000439151	NM_022455.4	1365	-/G																																												NEWRECORD																																		
HIST1H3D	0	MSKCC	GRCh37	6	26197157	26197158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0021079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	251	697	0	ENST00000356476.2:c.321_322insTG	p.Thr108Ter	p.T108*	ENST00000356476		107	-/TG																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44970633	44970633	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	259	367	0	ENST00000377967.4:c.4184del	p.Pro1395HisfsTer143	p.P1395Hfs*143	ENST00000377967	NM_021140.2	1395	Cca/ca																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3788596	3788596	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TT			P-0021079-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	221	602	0	ENST00000262367.5:c.4358delinsAA	p.Ile1453LysfsTer26	p.I1453Kfs*26	ENST00000262367	NM_004380.2	1453	aTc/aAAc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	304	1335	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36987052	36987052	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	260	1032	0	ENST00000354822.5:c.637C>T	p.Gln213Ter	p.Q213*	ENST00000354822	NM_001079668.2	213	Cag/Tag																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828563	72828563	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	158	1192	0	ENST00000268489.5:c.8018A>C	p.His2673Pro	p.H2673P	ENST00000268489	NM_006885.3	2673	cAc/cCc																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30325684	30325684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	35	473	1	ENST00000322652.5:c.1882G>T	p.Ala628Ser	p.A628S	ENST00000322652	NM_015355.2	628	Gct/Tct																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59761401	59761401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	43	868	0	ENST00000259008.2:c.3006G>T	p.Trp1002Cys	p.W1002C	ENST00000259008	NM_032043.2	1002	tgG/tgT																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15285089	15285089	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	164	1163	7	ENST00000263388.2:c.4526C>A	p.Ala1509Asp	p.A1509D	ENST00000263388	NM_000435.2	1509	gCc/gAc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41100981	41100981	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	125	1031	0	ENST00000373198.4:c.1375C>G	p.Arg459Gly	p.R459G	ENST00000373198	NM_133170.3	459	Cgg/Ggg																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93967181	93967181	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	23	1018	1	ENST00000369303.4:c.2171G>A	p.Arg724Lys	p.R724K	ENST00000369303	NM_004440.3	724	aGg/aAg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44969328	44969328	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021093-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	16	319	2	ENST00000377967.4:c.4010A>T	p.Glu1337Val	p.E1337V	ENST00000377967	NM_021140.2	1337	gAg/gTg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	465	921	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56492902	56492902	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	53	431	0	ENST00000407977.2:c.37T>A	p.Trp13Arg	p.W13R	ENST00000407977		13	Tgg/Agg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604748	48604748	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	88	698	0	ENST00000342988.3:c.1570T>A	p.Trp524Arg	p.W524R	ENST00000342988	NM_005359.5	524	Tgg/Agg																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185200166	185200166	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021091-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	122	947	0	ENST00000265026.3:c.2824del	p.Asp942ThrfsTer36	p.D942Tfs*36	ENST00000265026	NM_004721.4	941	tcG/tc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	536	1030	1	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48937001	48937001	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	372	666	2	ENST00000267163.4:c.769C>T	p.Gln257Ter	p.Q257*	ENST00000267163	NM_000321.2	257	Cag/Tag																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713738	30713738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	305	593	1	ENST00000359013.4:c.1138G>A	p.Ala380Thr	p.A380T	ENST00000359013	NM_001024847.2	380	Gcc/Acc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88420311	88420311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	352	617	0	ENST00000360948.2:c.2375C>T	p.Pro792Leu	p.P792L	ENST00000360948	NM_001012338.2	792	cCc/cTc																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118350896	118350896	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	386	710	0	ENST00000534358.1:c.3577A>T	p.Lys1193Ter	p.K1193*	ENST00000534358	NM_005933.3	1193	Aaa/Taa																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2135314	2135316	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0021126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	94	889	0	ENST00000219476.3:c.4655_4657del	p.Glu1552del	p.E1552del	ENST00000219476	NM_000548.3	1551	ggAGAa/gga																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45368211	45368212	+	missense_variant	Missense_Mutation	DNP	GA	GA	AG			P-0021126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	315	559	0	ENST00000262160.6:c.1390_1391delinsCT	p.Ser464Leu	p.S464L	ENST00000262160	NM_005901.5	464	TCa/CTa																																												NEWRECORD																																		
PDCD1	0	MSKCC	GRCh37	2	242794506	242794506	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0021126-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	542	963	0	ENST00000334409.5:c.437-1G>A		p.X146_splice	ENST00000334409	NM_005018.2	146																																													NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9787030	9787030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	137	855	1	ENST00000377346.4:c.3061G>A	p.Glu1021Lys	p.E1021K	ENST00000377346	NM_005026.3	1021	Gaa/Aaa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16261434	16261434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	133	904	0	ENST00000375759.3:c.8699C>T	p.Ser2900Leu	p.S2900L	ENST00000375759	NM_015001.2	2900	tCg/tTg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27089669	27089669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	94	883	4	ENST00000324856.7:c.2625G>A	p.Met875Ile	p.M875I	ENST00000324856	NM_006015.4	875	atG/atA																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100172	27100172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	82	668	2	ENST00000324856.7:c.3968G>A	p.Arg1323His	p.R1323H	ENST00000324856	NM_006015.4	1323	cGc/cAc																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36932400	36932400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	142	1128	0	ENST00000361632.4:c.2069C>T	p.Thr690Met	p.T690M	ENST00000361632		690	aCg/aTg																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43812205	43812205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	138	994	2	ENST00000372470.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000372470	NM_005373.2	357	cGa/cAa																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43812214	43812214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	135	979	0	ENST00000372470.3:c.1079G>A	p.Ser360Asn	p.S360N	ENST00000372470	NM_005373.2	360	aGc/aAc																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72163819	72163819	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	44	562	0	ENST00000357731.5:c.539A>G	p.Lys180Arg	p.K180R	ENST00000357731	NM_173808.2	180	aAa/aGa																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	102	935	0	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																												NEWRECORD																																		
CSDE1	0	MSKCC	GRCh37	1	115276472	115276472	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	75	762	2	ENST00000438362.2:c.856G>T	p.Glu286Ter	p.E286*	ENST00000438362	NM_001242891.1	286	Gaa/Taa																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162745593	162745593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	106	814	0	ENST00000367921.3:c.2008G>A	p.Glu670Lys	p.E670K	ENST00000367921	NM_006182.2	670	Gag/Aag																																												NEWRECORD																																		
IL10	0	MSKCC	GRCh37	1	206943236	206943236	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	78	561	2	ENST00000423557.1:c.382C>T	p.Arg128Ter	p.R128*	ENST00000423557	NM_000572.2	128	Cga/Tga																																												NEWRECORD																																		
HIST3H3	0	MSKCC	GRCh37	1	228613019	228613019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	77	423	0	ENST00000366696.1:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000366696	NM_003493.2	3	cGa/cAa																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115778	8115778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	113	903	3	ENST00000346208.3:c.1124G>A	p.Cys375Tyr	p.C375Y	ENST00000346208		375	tGc/tAc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63829469	63829469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	49	586	4	ENST00000279873.7:c.1112G>A	p.Arg371His	p.R371H	ENST00000279873	NM_032199.2	371	cGc/cAc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63829541	63829541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	60	570	1	ENST00000279873.7:c.1184G>A	p.Arg395His	p.R395H	ENST00000279873	NM_032199.2	395	cGc/cAc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63845613	63845613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	47	394	0	ENST00000279873.7:c.1352G>A	p.Ser451Asn	p.S451N	ENST00000279873	NM_032199.2	451	aGc/aAc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63850777	63850777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	74	640	0	ENST00000279873.7:c.1555G>A	p.Glu519Lys	p.E519K	ENST00000279873	NM_032199.2	519	Gaa/Aaa																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852134	63852134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	98	790	0	ENST00000279873.7:c.2912C>T	p.Ser971Leu	p.S971L	ENST00000279873	NM_032199.2	971	tCg/tTg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70405917	70405917	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	79	891	0	ENST00000373644.4:c.3431A>C	p.Asn1144Thr	p.N1144T	ENST00000373644	NM_030625.2	1144	aAc/aCc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711931	89711931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	28	795	0	ENST00000371953.3:c.549G>T	p.Lys183Asn	p.K183N	ENST00000371953	NM_000314.4	183	aaG/aaT																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	90	799	1	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																												NEWRECORD																																		
INPPL1	0	MSKCC	GRCh37	11	71944012	71944012	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	150	1017	0	ENST00000298229.2:c.1945C>T	p.Arg649Ter	p.R649*	ENST00000298229	NM_001567.3	649	Cga/Tga																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77048440	77048440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	141	916	1	ENST00000356341.3:c.1145C>T	p.Ser382Leu	p.S382L	ENST00000356341	NM_002576.4	382	tCg/tTg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	68	850	1	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108205756	108205756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	78	609	0	ENST00000278616.4:c.8071C>T	p.Arg2691Cys	p.R2691C	ENST00000278616	NM_000051.3	2691	Cgc/Tgc																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119168162	119168162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	89	853	0	ENST00000264033.4:c.2222C>T	p.Ala741Val	p.A741V	ENST00000264033	NM_005188.3	741	gCg/gTg																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18699323	18699323	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199904184		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	77	658	0	ENST00000266497.5:c.3424C>T	p.Arg1142Cys	p.R1142C	ENST00000266497		1142	Cgt/Tgt																																												NEWRECORD																																		
RECQL	0	MSKCC	GRCh37	12	21636471	21636471	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	103	872	0	ENST00000421138.2:c.539A>C	p.Lys180Thr	p.K180T	ENST00000421138		180	aAa/aCa																																												NEWRECORD																																		
H3F3C	0	MSKCC	GRCh37	12	31944961	31944961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	113	783	0	ENST00000340398.3:c.140C>T	p.Ala47Val	p.A47V	ENST00000340398	NM_001013699.2	47	gCg/gTg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245076	46245076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	98	800	0	ENST00000334344.6:c.3170C>T	p.Ser1057Leu	p.S1057L	ENST00000334344	NM_152641.2	1057	tCg/tTg																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49425893	49425893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	145	991	2	ENST00000301067.7:c.12595G>A	p.Ala4199Thr	p.A4199T	ENST00000301067	NM_003482.3	4199	Gca/Aca																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102869501	102869501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	111	690	3	ENST00000307046.8:c.140C>T	p.Thr47Met	p.T47M	ENST00000307046	NM_001111285.1	47	aCg/aTg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120969	115120969	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	81	754	0	ENST00000257566.3:c.37A>C	p.Thr13Pro	p.T13P	ENST00000257566	NM_016569.3	13	Aca/Cca																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	104	738	1	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28908194	28908194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	109	1005	2	ENST00000282397.4:c.2561C>T	p.Thr854Met	p.T854M	ENST00000282397	NM_002019.4	854	aCg/aTg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29008329	29008329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	60	518	0	ENST00000282397.4:c.542G>A	p.Gly181Glu	p.G181E	ENST00000282397	NM_002019.4	181	gGa/gAa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913279	32913279	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	54	861	0	ENST00000380152.3:c.4787A>C	p.Asn1596Thr	p.N1596T	ENST00000380152		1596	aAt/aCt																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73346368	73346368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	57	807	0	ENST00000377767.4:c.1432G>A	p.Val478Ile	p.V478I	ENST00000377767	NM_014953.3	478	Gta/Ata																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103519117	103519117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	95	821	0	ENST00000355739.4:c.2455C>T	p.Arg819Trp	p.R819W	ENST00000355739	NM_000123.3	819	Cgg/Tgg																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110434426	110434426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	136	1035	1	ENST00000375856.3:c.3975C>A	p.Phe1325Leu	p.F1325L	ENST00000375856	NM_003749.2	1325	ttC/ttA																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435634	110435634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	97	519	1	ENST00000375856.3:c.2767G>A	p.Asp923Asn	p.D923N	ENST00000375856	NM_003749.2	923	Gac/Aac																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36987192	36987192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	120	1034	0	ENST00000354822.5:c.497A>G	p.Asn166Ser	p.N166S	ENST00000354822	NM_001079668.2	166	aAc/aGc																																												NEWRECORD																																		
RAD51	0	MSKCC	GRCh37	15	40993358	40993358	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	78	593	1	ENST00000267868.3:c.184A>C	p.Asn62His	p.N62H	ENST00000267868	NM_002875.4	62	Aat/Cat																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42003246	42003246	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	103	993	0	ENST00000219905.7:c.2783A>C	p.Lys928Thr	p.K928T	ENST00000219905	NM_001164273.1	928	aAa/aCa																																												NEWRECORD																																		
TP53BP1	0	MSKCC	GRCh37	15	43707977	43707977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	164	1056	1	ENST00000382044.4:c.4904G>A	p.Arg1635His	p.R1635H	ENST00000382044	NM_001141980.1	1635	cGc/cAc																																												NEWRECORD																																		
TP53BP1	0	MSKCC	GRCh37	15	43714237	43714237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	165	1210	0	ENST00000382044.4:c.3916G>A	p.Asp1306Asn	p.D1306N	ENST00000382044	NM_001141980.1	1306	Gat/Aat																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007643	45007643	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	52	519	1	ENST00000558401.1:c.90C>A	p.Tyr30Ter	p.Y30*	ENST00000558401	NM_004048.2	30	taC/taA																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007672	45007672	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	78	587	0	ENST00000558401.1:c.119C>A	p.Ser40Ter	p.S40*	ENST00000558401	NM_004048.2	40	tCa/tAa																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007867	45007867	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	85	630	0	ENST00000558401.1:c.314T>C	p.Val105Ala	p.V105A	ENST00000558401	NM_004048.2	105	gTg/gCg																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	133	924	5	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67473635	67473635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	142	937	1	ENST00000327367.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000327367	NM_005902.3	239	Gag/Aag																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88726711	88726711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	80	742	1	ENST00000360948.2:c.333G>T	p.Lys111Asn	p.K111N	ENST00000360948	NM_001012338.2	111	aaG/aaT																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91293070	91293070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	42	648	2	ENST00000355112.3:c.572G>T	p.Arg191Ile	p.R191I	ENST00000355112	NM_000057.2	191	aGa/aTa																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91326066	91326066	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	64	680	0	ENST00000355112.3:c.2570T>G	p.Phe857Cys	p.F857C	ENST00000355112	NM_000057.2	857	tTt/tGt																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99250839	99250839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	107	690	1	ENST00000268035.6:c.143G>A	p.Arg48His	p.R48H	ENST00000268035	NM_000875.3	48	cGc/cAc																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99465573	99465573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	45	852	3	ENST00000268035.6:c.2398C>T	p.Arg800Cys	p.R800C	ENST00000268035	NM_000875.3	800	Cgc/Tgc																																												NEWRECORD																																		
SLX4	0	MSKCC	GRCh37	16	3639366	3639366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	155	1041	0	ENST00000294008.3:c.4273G>A	p.Asp1425Asn	p.D1425N	ENST00000294008	NM_032444.2	1425	Gac/Aac																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3778168	3778168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	150	1082	1	ENST00000262367.5:c.6880C>T	p.Arg2294Trp	p.R2294W	ENST00000262367	NM_004380.2	2294	Cgg/Tgg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857197	9857197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	109	705	1	ENST00000330684.3:c.4204C>T	p.Arg1402Trp	p.R1402W	ENST00000330684	NM_001134407.1	1402	Cgg/Tgg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72845934	72845934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	75	632	3	ENST00000268489.5:c.3533C>T	p.Ser1178Leu	p.S1178L	ENST00000268489	NM_006885.3	1178	tCg/tTg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81888069	81888069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	69	636	0	ENST00000359376.3:c.214G>A	p.Glu72Lys	p.E72K	ENST00000359376	NM_002661.3	72	Gaa/Aaa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29556080	29556080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	49	395	1	ENST00000358273.4:c.2447G>A	p.Arg816Gln	p.R816Q	ENST00000358273	NM_001042492.2	816	cGa/cAa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29557865	29557865	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	29	354	0	ENST00000358273.4:c.3119A>C	p.Lys1040Thr	p.K1040T	ENST00000358273	NM_001042492.2	1040	aAg/aCg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29579995	29579995	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	78	698	3	ENST00000358273.4:c.4150G>T	p.Glu1384Ter	p.E1384*	ENST00000358273	NM_001042492.2	1384	Gaa/Taa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29652960	29652960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	91	735	0	ENST00000358273.4:c.4958G>A	p.Arg1653His	p.R1653H	ENST00000358273	NM_001042492.2	1653	cGc/cAc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29654757	29654757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	77	635	0	ENST00000358273.4:c.5509G>A	p.Asp1837Asn	p.D1837N	ENST00000358273	NM_001042492.2	1837	Gac/Aac																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29654820	29654820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	70	498	1	ENST00000358273.4:c.5572G>A	p.Ala1858Thr	p.A1858T	ENST00000358273	NM_001042492.2	1858	Gca/Aca																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45372045	45372045	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	77	801	0	ENST00000262160.6:c.1124A>C	p.Lys375Thr	p.K375T	ENST00000262160	NM_005901.5	375	aAa/aCa																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	112	967	1	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45395689	45395689	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	100	759	0	ENST00000262160.6:c.445T>G	p.Cys149Gly	p.C149G	ENST00000262160	NM_005901.5	149	Tgc/Ggc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5215538	5215538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	148	1083	1	ENST00000357368.4:c.4165G>A	p.Asp1389Asn	p.D1389N	ENST00000357368	NM_002850.3	1389	Gac/Aac																																												NEWRECORD																																		
UPF1	0	MSKCC	GRCh37	19	18968144	18968144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	154	944	2	ENST00000262803.5:c.1984G>A	p.Asp662Asn	p.D662N	ENST00000262803	NM_002911.3	662	Gac/Aac																																												NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36211219	36211219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	183	1445	1	ENST00000222270.7:c.970G>A	p.Glu324Lys	p.E324K	ENST00000222270	NM_014727.1	324	Gaa/Aaa																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52719065	52719065	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	76	937	0	ENST00000322088.6:c.841A>C	p.Thr281Pro	p.T281P	ENST00000322088	NM_014225.5	281	Aca/Cca																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25470926	25470926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	144	1095	0	ENST00000264709.3:c.835G>A	p.Asp279Asn	p.D279N	ENST00000264709	NM_175629.2	279	Gat/Aat																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26068374	26068374	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	78	749	0	ENST00000435504.4:c.116A>C	p.Gln39Pro	p.Q39P	ENST00000435504		39	cAg/cCg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29416563	29416563	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	28	784	0	ENST00000389048.3:c.4390C>T	p.Arg1464Ter	p.R1464*	ENST00000389048	NM_004304.4	1464	Cga/Tga																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29606678	29606678	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188859061		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	101	935	0	ENST00000389048.3:c.1202G>A	p.Arg401Gln	p.R401Q	ENST00000389048	NM_004304.4	401	cGa/cAa																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	132	948	2	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga																																												NEWRECORD																																		
SOS1	0	MSKCC	GRCh37	2	39222425	39222425	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	62	1056	0	ENST00000402219.2:c.3185A>C	p.Lys1062Thr	p.K1062T	ENST00000402219	NM_005633.3	1062	aAa/aCa																																												NEWRECORD																																		
SOS1	0	MSKCC	GRCh37	2	39281837	39281837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	78	863	1	ENST00000402219.2:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000402219	NM_005633.3	213	cGa/cAa																																												NEWRECORD																																		
EPCAM	0	MSKCC	GRCh37	2	47606099	47606099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	61	640	0	ENST00000263735.4:c.563A>G	p.Asn188Ser	p.N188S	ENST00000263735	NM_002354.2	188	aAt/aGt																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47635578	47635578	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	119	842	0	ENST00000233146.2:c.250A>G	p.Asn84Asp	p.N84D	ENST00000233146	NM_000251.2	84	Aat/Gat																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47641426	47641426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	90	747	0	ENST00000233146.2:c.811T>C	p.Ser271Pro	p.S271P	ENST00000233146	NM_000251.2	271	Tct/Cct																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47703539	47703539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	107	955	0	ENST00000233146.2:c.2039G>A	p.Arg680Gln	p.R680Q	ENST00000233146	NM_000251.2	680	cGa/cAa																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99193587	99193587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	90	728	2	ENST00000074304.5:c.2782G>A	p.Ala928Thr	p.A928T	ENST00000074304	NM_001134224.1	928	Gcc/Acc																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128050307	128050307	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	132	839	0	ENST00000285398.2:c.350A>C	p.Lys117Thr	p.K117T	ENST00000285398	NM_000122.1	117	aAa/aCa																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198267680	198267680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	89	649	0	ENST00000335508.6:c.1799T>C	p.Leu600Ser	p.L600S	ENST00000335508	NM_012433.2	600	tTg/tCg																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	90	749	2	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204737492	204737492	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	82	679	0	ENST00000302823.3:c.629A>C	p.Glu210Ala	p.E210A	ENST00000302823	NM_005214.4	210	gAa/gCa																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209103819	209103819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	78	861	1	ENST00000345146.2:c.1130C>T	p.Ala377Val	p.A377V	ENST00000345146	NM_005896.2	377	gCt/gTt																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9523279	9523279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	141	946	0	ENST00000353224.5:c.1958G>A	p.Arg653Gln	p.R653Q	ENST00000353224	NM_177990.2	653	cGg/cAg																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31019417	31019417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	79	790	0	ENST00000375687.4:c.914G>A	p.Ser305Asn	p.S305N	ENST00000375687	NM_015338.5	305	aGc/aAc																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31021124	31021124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	150	931	1	ENST00000375687.4:c.1123G>A	p.Val375Met	p.V375M	ENST00000375687	NM_015338.5	375	Gtg/Atg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40713470	40713470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	42	1016	1	ENST00000373198.4:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000373198	NM_133170.3	1349	Cgt/Tgt																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40899085	40899085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	124	968	1	ENST00000373198.4:c.2185G>T	p.Gly729Cys	p.G729C	ENST00000373198	NM_133170.3	729	Ggc/Tgc																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46265268	46265268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	71	539	0	ENST00000371998.3:c.2138T>C	p.Ile713Thr	p.I713T	ENST00000371998		713	aTa/aCa																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57485442	57485442	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	55	626	0	ENST00000371085.3:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000371085	NM_000516.4	342	Cga/Tga																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36171640	36171640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	115	641	0	ENST00000300305.3:c.925G>A	p.Gly309Ser	p.G309S	ENST00000300305		309	Ggc/Agc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41565543	41565543	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	30	814	1	ENST00000263253.7:c.4209C>A	p.Phe1403Leu	p.F1403L	ENST00000263253	NM_001429.3	1403	ttC/ttA																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12650277	12650277	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	118	904	0	ENST00000251849.4:c.569T>C	p.Ile190Thr	p.I190T	ENST00000251849	NM_002880.3	190	aTc/aCc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47098930	47098930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	168	1068	2	ENST00000409792.3:c.6344A>G	p.Lys2115Arg	p.K2115R	ENST00000409792	NM_014159.6	2115	aAa/aGa																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49927394	49927394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	57	1031	1	ENST00000296474.3:c.3910C>T	p.Arg1304Trp	p.R1304W	ENST00000296474	NM_002447.2	1304	Cgg/Tgg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52584478	52584478	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142726131		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	111	822	4	ENST00000394830.3:c.4535C>T	p.Ala1512Val	p.A1512V	ENST00000394830	NM_018313.4	1512	gCg/gTg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52637717	52637717	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	93	792	2	ENST00000394830.3:c.2599G>T	p.Glu867Ter	p.E867*	ENST00000394830	NM_018313.4	867	Gaa/Taa																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	69990402	69990402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	46	559	0	ENST00000352241.4:c.682G>A	p.Asp228Asn	p.D228N	ENST00000352241	NM_198159.2	228	Gat/Aat																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71008534	71008534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	63	477	0	ENST00000318789.4:c.1898T>C	p.Val633Ala	p.V633A	ENST00000318789	NM_032682.5	633	gTa/gCa																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71026984	71026984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	97	670	0	ENST00000318789.4:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000318789	NM_032682.5	448	tCg/tTg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89480466	89480466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	67	527	0	ENST00000336596.2:c.2303C>T	p.Ser768Leu	p.S768L	ENST00000336596	NM_005233.5	768	tCg/tTg																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128204593	128204593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	136	1031	0	ENST00000341105.2:c.848G>A	p.Arg283His	p.R283H	ENST00000341105	NM_032638.4	283	cGc/cAc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134670615	134670615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	127	1047	2	ENST00000398015.3:c.526G>A	p.Ala176Thr	p.A176T	ENST00000398015	NM_004441.4	176	Gct/Act																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138374251	138374251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	85	854	0	ENST00000289153.2:c.3193C>T	p.Arg1065Trp	p.R1065W	ENST00000289153	NM_006219.2	1065	Cgg/Tgg																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	53	616	1	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142274748	142274749	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	60	627	0	ENST00000350721.4:c.2311_2312insC	p.Lys771ThrfsTer6	p.K771Tfs*6	ENST00000350721	NM_001184.3	771	aaa/aCaa																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142274778	142274778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	69	776	0	ENST00000350721.4:c.2282C>T	p.Ser761Phe	p.S761F	ENST00000350721	NM_001184.3	761	tCt/tTt																																												NEWRECORD																																		
PRKCI	0	MSKCC	GRCh37	3	169999726	169999726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	82	706	1	ENST00000295797.4:c.1037G>A	p.Arg346Gln	p.R346Q	ENST00000295797	NM_002740.5	346	cGa/cAa																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186504023	186504023	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	29	514	1	ENST00000323963.5:c.588A>C	p.Gln196His	p.Q196H	ENST00000323963		196	caA/caC																																												NEWRECORD																																		
EIF4A2	1974	MSKCC	GRCh37	3	186506913	186506913	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	38	361	0	ENST00000323963.5:c.1080-1G>T		p.X360_splice	ENST00000323963		360																																													NEWRECORD																																		
BCL6	604	MSKCC	GRCh37	3	187447384	187447384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780987785		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	119	937	1	ENST00000232014.4:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000232014	NM_001130845.1	270	cGa/cAa																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189587160	189587160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	82	801	0	ENST00000264731.3:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000264731	NM_003722.4	393	Cga/Tga																																												NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	115	738	0	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																												NEWRECORD																																		
WHSC1	0	MSKCC	GRCh37	4	1952853	1952853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	134	913	0	ENST00000382891.5:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000382891	NM_133335.3	646	Gaa/Aaa																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55564503	55564503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	103	688	0	ENST00000288135.5:c.391G>A	p.Asp131Asn	p.D131N	ENST00000288135	NM_000222.2	131	Gac/Aac																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467751	66467751	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	45	559	1	ENST00000273854.3:c.518A>G	p.Lys173Arg	p.K173R	ENST00000273854	NM_004439.5	173	aAa/aGa																																												NEWRECORD																																		
FAM175A	0	MSKCC	GRCh37	4	84383654	84383654	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	91	1015	0	ENST00000321945.7:c.1198T>G	p.Phe400Val	p.F400V	ENST00000321945	NM_139076.2	400	Ttt/Gtt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156315	106156315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	71	485	0	ENST00000380013.4:c.1216C>A	p.Leu406Ile	p.L406I	ENST00000380013	NM_001127208.2	406	Ctt/Att																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156370	106156370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	42	504	0	ENST00000380013.4:c.1271G>T	p.Ser424Ile	p.S424I	ENST00000380013	NM_001127208.2	424	aGc/aTc																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	93	849	4	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539885	187539885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	89	688	1	ENST00000441802.2:c.7855C>A	p.Leu2619Ile	p.L2619I	ENST00000441802	NM_005245.3	2619	Ctt/Att																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630501	187630501	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	162	952	0	ENST00000441802.2:c.481A>C	p.Asn161His	p.N161H	ENST00000441802	NM_005245.3	161	Aac/Cac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630587	187630587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	109	1064	0	ENST00000441802.2:c.395G>A	p.Arg132Gln	p.R132Q	ENST00000441802	NM_005245.3	132	cGa/cAa																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1258719	1258719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	165	1015	1	ENST00000310581.5:c.3026C>T	p.Ala1009Val	p.A1009V	ENST00000310581	NM_198253.2	1009	gCg/gTg																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35874590	35874591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	109	863	0	ENST00000303115.3:c.752dupT	p.Ser252LeufsTer18	p.S252Lfs*18	ENST00000303115	NM_002185.3	249	agt/agTt																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38982057	38982057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	76	893	3	ENST00000357387.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000357387	NM_152756.3	222	cGa/cAa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56152566	56152566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	53	392	1	ENST00000399503.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000399503	NM_005921.1	208	Cga/Tga																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	58	513	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589618	67589618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057519838		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	55	516	0	ENST00000274335.5:c.1381C>T	p.Arg461Ter	p.R461*	ENST00000274335		461	Cga/Tga																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591270	67591270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	79	623	0	ENST00000274335.5:c.1768C>T	p.Arg590Trp	p.R590W	ENST00000274335		590	Cgg/Tgg																																												NEWRECORD																																		
MSH3	0	MSKCC	GRCh37	5	80168958	80168958	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	85	989	0	ENST00000265081.6:c.3154T>G	p.Phe1052Val	p.F1052V	ENST00000265081	NM_002439.4	1052	Ttt/Gtt																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86670706	86670706	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	17	417	0	ENST00000274376.6:c.1984A>C	p.Thr662Pro	p.T662P	ENST00000274376	NM_002890.2	662	Aca/Cca																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	55	606	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	62	454	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131940522	131940522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	62	591	0	ENST00000265335.6:c.2549G>A	p.Arg850His	p.R850H	ENST00000265335		850	cGt/cAt																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176562484	176562484	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	102	985	0	ENST00000439151.2:c.380A>C	p.Lys127Thr	p.K127T	ENST00000439151	NM_022455.4	127	aAa/aCa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176721771	176721771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	80	712	4	ENST00000439151.2:c.7402C>T	p.Arg2468Trp	p.R2468W	ENST00000439151	NM_022455.4	2468	Cgg/Tgg																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180057039	180057039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	134	1092	0	ENST00000261937.6:c.580T>C	p.Ser194Pro	p.S194P	ENST00000261937	NM_182925.4	194	Tcc/Ccc																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056291	26056292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	114	748	0	ENST00000343677.2:c.365dup	p.Ala123GlyfsTer7	p.A123Gfs*7	ENST00000343677	NM_005319.3	122	aag/aaAg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117662700	117662700	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	56	757	1	ENST00000368508.3:c.4765G>T	p.Glu1589Ter	p.E1589*	ENST00000368508	NM_002944.2	1589	Gaa/Taa																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6026666	6026666	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	186	1463	0	ENST00000265849.7:c.1730A>C	p.Lys577Thr	p.K577T	ENST00000265849	NM_000535.5	577	aAg/aCg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55224321	55224321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	89	698	0	ENST00000275493.2:c.1102G>A	p.Asp368Asn	p.D368N	ENST00000275493	NM_005228.3	368	Gat/Aat																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55273205	55273205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	126	873	1	ENST00000275493.2:c.3528C>A	p.Phe1176Leu	p.F1176L	ENST00000275493	NM_005228.3	1176	ttC/ttA																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509432	106509432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	106	911	0	ENST00000359195.3:c.1426C>T	p.Arg476Cys	p.R476C	ENST00000359195	NM_002649.2	476	Cgc/Tgc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106545636	106545636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	64	874	0	ENST00000359195.3:c.3113G>A	p.Gly1038Glu	p.G1038E	ENST00000359195	NM_002649.2	1038	gGa/gAa																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	53	432	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128845086	128845086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	188	1098	2	ENST00000249373.3:c.580G>A	p.Glu194Lys	p.E194K	ENST00000249373	NM_005631.4	194	Gaa/Aaa																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140487360	140487360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507472		P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	103	916	2	ENST00000288602.6:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000288602	NM_004333.4	389	Cgt/Tgt																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151860317	151860317	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	85	683	0	ENST00000262189.6:c.10345T>C	p.Ser3449Pro	p.S3449P	ENST00000262189	NM_170606.2	3449	Tcc/Ccc																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151871325	151871325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	61	583	0	ENST00000262189.6:c.9265T>G	p.Phe3089Val	p.F3089V	ENST00000262189	NM_170606.2	3089	Ttt/Gtt																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151878863	151878863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	118	841	2	ENST00000262189.6:c.6082C>T	p.Arg2028Ter	p.R2028*	ENST00000262189	NM_170606.2	2028	Cga/Tga																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151945021	151945021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	10	217	0	ENST00000262189.6:c.2498G>T	p.Arg833Ile	p.R833I	ENST00000262189	NM_170606.2	833	aGa/aTa																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38287216	38287216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	176	1155	0	ENST00000425967.3:c.441C>A	p.Phe147Leu	p.F147L	ENST00000425967	NM_001174067.1	147	ttC/ttA																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	68995539	68995539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	83	1018	0	ENST00000288368.4:c.1943C>A	p.Pro648His	p.P648H	ENST00000288368	NM_024870.2	648	cCt/cAt																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	69136820	69136820	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	84	753	0	ENST00000288368.4:c.4734G>T	p.Lys1578Asn	p.K1578N	ENST00000288368	NM_024870.2	1578	aaG/aaT																																												NEWRECORD																																		
AGO2	0	MSKCC	GRCh37	8	141582961	141582961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	171	1167	2	ENST00000220592.5:c.286G>A	p.Gly96Ser	p.G96S	ENST00000220592	NM_012154.3	96	Ggc/Agc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8340357	8340357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	99	775	0	ENST00000356435.5:c.5239C>T	p.Arg1747Cys	p.R1747C	ENST00000356435		1747	Cgt/Tgt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971026	21971026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	88	445	1	ENST00000304494.5:c.332G>A	p.Gly111Asp	p.G111D	ENST00000304494	NM_000077.4	111	gGc/gAc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971026	21971026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	88	445	1	ENST00000304494.5:c.332G>A	p.Gly111Asp	p.G111D	ENST00000304494	NM_000077.4	111	gGc/gAc																																												NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27229184	27229184	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	111	826	0	ENST00000380036.4:c.3329A>C	p.Lys1110Thr	p.K1110T	ENST00000380036	NM_000459.3	1110	aAg/aCg																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98231389	98231389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	121	873	4	ENST00000331920.6:c.1894G>A	p.Asp632Asn	p.D632N	ENST00000331920	NM_000264.3	632	Gac/Aac																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98268698	98268698	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	53	544	0	ENST00000331920.6:c.385T>C	p.Trp129Arg	p.W129R	ENST00000331920	NM_000264.3	129	Tgg/Cgg																																												NEWRECORD																																		
PPP6C	0	MSKCC	GRCh37	9	127912079	127912079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	62	588	1	ENST00000373547.4:c.791G>A	p.Arg264His	p.R264H	ENST00000373547	NM_002721.4	264	cGt/cAt																																												NEWRECORD																																		
PPP6C	0	MSKCC	GRCh37	9	127915943	127915943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	98	858	2	ENST00000373547.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000373547	NM_002721.4	180	Gaa/Aaa																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133760790	133760790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	129	936	0	ENST00000318560.5:c.3113C>T	p.Ala1038Val	p.A1038V	ENST00000318560	NM_005157.4	1038	gCg/gTg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139393575	139393575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	171	1006	0	ENST00000277541.6:c.6071T>C	p.Val2024Ala	p.V2024A	ENST00000277541	NM_017617.3	2024	gTa/gCa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139410085	139410085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	200	1192	6	ENST00000277541.6:c.1753G>A	p.Ala585Thr	p.A585T	ENST00000277541	NM_017617.3	585	Gcc/Acc																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411783	63411783	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	153	592	0	ENST00000330258.3:c.1384G>T	p.Glu462Ter	p.E462*	ENST00000330258	NM_152424.3	462	Gaa/Taa																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70344018	70344018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	125	524	0	ENST00000374080.3:c.1754G>A	p.Arg585Gln	p.R585Q	ENST00000374080		585	cGa/cAa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938406	76938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	91	501	0	ENST00000373344.5:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000373344	NM_000489.3	781	cGa/cAa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123210266	123210266	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	84	436	0	ENST00000218089.9:c.2618T>C	p.Val873Ala	p.V873A	ENST00000218089	NM_001042749.1	873	gTa/gCa																																												NEWRECORD																																		
H3F3A	0	MSKCC	GRCh37	1	226252163	226252163	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021090-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	14	131	0	ENST00000366813.1:c.111G>T	p.Lys37Asn	p.K37N	ENST00000366813		37	aaG/aaT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	219	926	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0021074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			222	80	665	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114925328	114925328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	160	731	0	ENST00000543371.1:c.1406G>A	p.Cys469Tyr	p.C469Y	ENST00000543371	NM_001198531.1	469	tGc/tAc																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106196220	106196233	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGACCAGTCATG	CAGGACCAGTCATG	-			P-0021074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	68	347	0	ENST00000380013.4:c.4556_4569del	p.Gly1519AlafsTer54	p.G1519Afs*54	ENST00000380013	NM_001127208.2	1518	tCAGGACCAGTCATG/t																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175192	112175193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0021074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	61	328	0	ENST00000257430.4:c.3903_3904dup	p.Leu1302ProfsTer4	p.L1302Pfs*4	ENST00000257430	NM_000038.5	1301	acc/aCCcc																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	218	645	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																												NEWRECORD																																		
RAC1	0	MSKCC	GRCh37	7	6442013	6442013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	45	337	0	ENST00000356142.4:c.572C>T	p.Ala191Val	p.A191V	ENST00000356142	NM_018890.3	191	gCg/gTg																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	69002946	69002946	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146486437		P-0021128-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	54	296	0	ENST00000288368.4:c.2246C>T	p.Thr749Met	p.T749M	ENST00000288368	NM_024870.2	749	aCg/aTg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	263	912	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	73	645	0	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108204612	108204612	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	43	370	0	ENST00000278616.4:c.7928-1G>A		p.X2643_splice	ENST00000278616	NM_000051.3	2643																																													NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108206581	108206581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	120	457	1	ENST00000278616.4:c.8161G>T	p.Asp2721Tyr	p.D2721Y	ENST00000278616	NM_000051.3	2721	Gac/Tac																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21549330	21549330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	97	835	0	ENST00000382592.4:c.2946C>G	p.Ile982Met	p.I982M	ENST00000382592	NM_014572.2	982	atC/atG																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134463	41134463	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199719831		P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	143	742	1	ENST00000379561.5:c.1165G>A	p.Val389Ile	p.V389I	ENST00000379561	NM_002015.3	389	Gtt/Att																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42040892	42040892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	161	741	2	ENST00000219905.7:c.5270G>T	p.Arg1757Leu	p.R1757L	ENST00000219905	NM_001164273.1	1757	cGt/cTt																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23634384	23634384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	159	871	1	ENST00000261584.4:c.2902G>T	p.Ala968Ser	p.A968S	ENST00000261584	NM_024675.3	968	Gct/Tct																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16012199	16012199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	93	715	0	ENST00000268712.3:c.2083G>A	p.Asp695Asn	p.D695N	ENST00000268712	NM_006311.3	695	Gat/Aat																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41256249	41256249	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	74	554	0	ENST00000357654.3:c.331G>T	p.Glu111Ter	p.E111*	ENST00000357654	NM_007294.3	111	Gaa/Taa																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29121316	29121317	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTT			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	126	981	0	ENST00000328354.6:c.356_358dup	p.Lys119dup	p.K119dup	ENST00000328354	NM_007194.3	119	agc/aAAAgc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134670378	134670378	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	140	594	0	ENST00000398015.3:c.289A>T	p.Ser97Cys	p.S97C	ENST00000398015	NM_004441.4	97	Agc/Tgc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178928061	178928061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	93	794	0	ENST00000263967.3:c.1339C>T	p.Pro447Ser	p.P447S	ENST00000263967	NM_006218.2	447	Cca/Tca																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039888	47039888	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	92	937	2	ENST00000329236.7:c.997C>T	p.Gln333Ter	p.Q333*	ENST00000329236	NM_001204466.1	333	Cag/Tag																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89828421	89828423	+	stop_gained	Nonsense_Mutation	ONP	GGT	GGT	AGA			P-0021100-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	108	583	1	ENST00000389301.3:c.2786_2788delinsTCT	p.Tyr929_Gln930delinsPheTer	p.Y929_Q930delinsF*	ENST00000389301	NM_000135.2	929	tACCaa/tTCTaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	207	1116	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741684	17741684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	67	726	5	ENST00000250003.3:c.355C>T	p.Arg119Trp	p.R119W	ENST00000250003	NM_002478.4	119	Cgg/Tgg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46125036	46125036	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	70	525	3	ENST00000334344.6:c.223G>T	p.Glu75Ter	p.E75*	ENST00000334344	NM_152641.2	75	Gag/Tag																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246497	46246509	+	frameshift_variant	Frame_Shift_Del	DEL	CCAAATAAAGTAG	CCAAATAAAGTAG	-			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	43	388	0	ENST00000334344.6:c.4591_4603del	p.Pro1531GlufsTer31	p.P1531Efs*31	ENST00000334344	NM_152641.2	1531	CCAAATAAAGTAGga/ga																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121435390	121435390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	109	1184	2	ENST00000257555.6:c.1423C>A	p.Pro475Thr	p.P475T	ENST00000257555		475	Ccg/Acg																																												NEWRECORD																																		
NFKBIA	0	MSKCC	GRCh37	14	35872934	35872934	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	141	857	0	ENST00000216797.5:c.298G>C	p.Asp100His	p.D100H	ENST00000216797	NM_020529.2	100	Gac/Cac																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95562480	95562480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	54	713	2	ENST00000343455.3:c.4777G>A	p.Val1593Ile	p.V1593I	ENST00000343455	NM_177438.2	1593	Gta/Ata																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42034837	42034837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	145	839	0	ENST00000219905.7:c.4681del	p.Thr1561ProfsTer15	p.T1561Pfs*15	ENST00000219905	NM_001164273.1	1560	cAa/ca																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29550586	29550586	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	45	346	0	ENST00000358273.4:c.1845+1G>T		p.X615_splice	ENST00000358273	NM_001042492.2	615																																													NEWRECORD																																		
BCL2	0	MSKCC	GRCh37	18	60985602	60985602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			105	69	329	0	ENST00000333681.4:c.298G>T	p.Ala100Ser	p.A100S	ENST00000333681		100	Gcc/Tcc																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40744873	40744873	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	58	983	0	ENST00000392038.2:c.647A>G	p.Lys216Arg	p.K216R	ENST00000392038	NM_001626.4	216	aAg/aGg																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54956497	54956497	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	126	705	0	ENST00000312783.6:c.697A>T	p.Thr233Ser	p.T233S	ENST00000312783	NM_198436.1	233	Act/Tct																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185200167	185200167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	141	970	1	ENST00000265026.3:c.2824G>T	p.Asp942Tyr	p.D942Y	ENST00000265026	NM_004721.4	942	Gac/Tac																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106197171	106197171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	64	557	1	ENST00000380013.4:c.5504G>T	p.Gly1835Val	p.G1835V	ENST00000380013	NM_001127208.2	1835	gGt/gTt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187530351	187530351	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	86	535	0	ENST00000441802.2:c.10192C>G	p.Leu3398Val	p.L3398V	ENST00000441802	NM_005245.3	3398	Ctc/Gtc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765346	66765347	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0021088-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	59	625	1	ENST00000374690.3:c.358_359delinsAT	p.Gln120Met	p.Q120M	ENST00000374690	NM_000044.3	120	CAg/ATg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	450	983	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	23	1034	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	286	1075	2	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40735458	40735458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	202	1026	0	ENST00000373198.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000373198	NM_133170.3	1139	Cgg/Tgg																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	492	802	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112128202	112128203	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TAGTC			P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	173	612	0	ENST00000257430.4:c.705_706insTAGTC	p.Gln236Ter	p.Q236*	ENST00000257430	NM_000038.5	235	-/TAGTC																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	104	368	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33287518	33287518	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	511	977	2	ENST00000374542.5:c.1579A>G	p.Ile527Val	p.I527V	ENST00000374542	NM_001141970.1	527	Ata/Gta																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39932980	39932980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021116-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	239	955	3	ENST00000378444.4:c.1619G>A	p.Arg540Gln	p.R540Q	ENST00000378444	NM_001123385.1	540	cGg/cAg																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	224	872	3	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			240	329	1137	14	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	196	748	3	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	218	870	1	ENST00000256078.4:c.99T>A	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaA																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	145	593	5	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604745	48604745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	191	726	4	ENST00000342988.3:c.1567T>C	p.Cys523Arg	p.C523R	ENST00000342988	NM_005359.5	523	Tgc/Cgc																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856019	111856019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	257	861	6	ENST00000341259.2:c.70C>T	p.Arg24Trp	p.R24W	ENST00000341259	NM_005475.2	24	Cgg/Tgg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119829	70119830	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	418	1245	3	ENST00000245479.2:c.832_833dup	p.Ser279Ter	p.S279*	ENST00000245479	NM_000346.3	277	-/CT																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78931459	78931459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	104	1091	0	ENST00000306801.3:c.3406G>A	p.Gly1136Ser	p.G1136S	ENST00000306801	NM_020761.2	1136	Ggc/Agc																																												NEWRECORD																																		
EIF4E	0	MSKCC	GRCh37	4	99812467	99812467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	204	666	1	ENST00000280892.6:c.202T>C	p.Phe68Leu	p.F68L	ENST00000280892	NM_001130678.1	68	Ttt/Ctt																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131940545	131940545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	212	645	2	ENST00000265335.6:c.2572G>A	p.Glu858Lys	p.E858K	ENST00000265335		858	Gaa/Aaa																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33290660	33290660	+	5_prime_UTR_variant	5'UTR	SNP	C	C	A			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	37	963	0	ENST00000374542.5:c.-74G>T		p.*25*	ENST00000374542	NM_001141970.1																																														NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150004221	150004221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021119-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	75	623	0	ENST00000253339.5:c.2004G>A	p.Met668Ile	p.M668I	ENST00000253339		668	atG/atA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			843	123	971	1	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175754	112175754	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0021083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	28	540	0	ENST00000257430.4:c.4463T>A	p.Leu1488Ter	p.L1488*	ENST00000257430	NM_000038.5	1488	tTa/tAa																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061227	38061235	+	inframe_deletion	In_Frame_Del	DEL	GAACATGTT	GAACATGTT	-			P-0021083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	47	789	0	ENST00000250448.2:c.754_762del	p.Asn252_Phe254del	p.N252_F254del	ENST00000250448	NM_004496.3	252	AACATGTTC/-																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	382	1117	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7572986	7572986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	249	640	1	ENST00000269305.4:c.1123C>T	p.Gln375Ter	p.Q375*	ENST00000269305	NM_001126112.2	375	Cag/Tag																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156843610	156843610	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1554	139	1162	0	ENST00000524377.1:c.1036C>G	p.Leu346Val	p.L346V	ENST00000524377	NM_002529.3	346	Ctg/Gtg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332915	70332915	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	143	994	0	ENST00000373644.4:c.820G>C	p.Gly274Arg	p.G274R	ENST00000373644	NM_030625.2	274	Ggt/Cgt																																												NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69625297	69625297	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	364	1043	1	ENST00000334134.2:c.496G>T	p.Gly166Cys	p.G166C	ENST00000334134	NM_005247.2	166	Ggc/Tgc																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49434697	49434697	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	312	1087	0	ENST00000301067.7:c.6856G>C	p.Glu2286Gln	p.E2286Q	ENST00000301067	NM_003482.3	2286	Gag/Cag																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40485990	40485990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	339	1080	1	ENST00000264657.5:c.875C>T	p.Ser292Phe	p.S292F	ENST00000264657	NM_139276.2	292	tCc/tTc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134968303	134968303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	270	999	1	ENST00000398015.3:c.2816C>A	p.Ser939Tyr	p.S939Y	ENST00000398015	NM_004441.4	939	tCc/tAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173912	112173912	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	179	546	0	ENST00000257430.4:c.2621C>G	p.Ser874Ter	p.S874*	ENST00000257430	NM_000038.5	874	tCa/tGa																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55223550	55223551	+	missense_variant	Missense_Mutation	DNP	CG	CG	AC			P-0021120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	623	864	0	ENST00000275493.2:c.917_918delinsAC	p.Ser306Tyr	p.S306Y	ENST00000275493	NM_005228.3	306	tCG/tAC																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70345201	70345201	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0021120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	139	853	0	ENST00000374080.3:c.2227G>T	p.Glu743Ter	p.E743*	ENST00000374080		743	Gag/Tag																																												NEWRECORD																																		
SPRED1	0	MSKCC	GRCh37	15	38643213	38643213	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0021120-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	59	476	0	ENST00000299084.4:c.685-2A>G		p.X229_splice	ENST00000299084	NM_152594.2	229																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	259	1015	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41385233	41385233	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	48	847	0	ENST00000373198.4:c.728T>C	p.Val243Ala	p.V243A	ENST00000373198	NM_133170.3	243	gTc/gCc																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138400860	138400860	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	50	972	0	ENST00000289153.2:c.2453A>T	p.Gln818Leu	p.Q818L	ENST00000289153	NM_006219.2	818	cAa/cTa																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133759916	133759916	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	62	1041	0	ENST00000318560.5:c.2239T>C	p.Phe747Leu	p.F747L	ENST00000318560	NM_005157.4	747	Ttt/Ctt																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133760877	133760877	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	56	1039	1	ENST00000318560.5:c.3200G>C	p.Cys1067Ser	p.C1067S	ENST00000318560	NM_005157.4	1067	tGc/tCc																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123195076	123195076	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0021080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	39	590	1	ENST00000218089.9:c.1419A>T	p.Leu473Phe	p.L473F	ENST00000218089	NM_001042749.1	473	ttA/ttT																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021122-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	13	917	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	141	514	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108129749	108129749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	155	1022	0	ENST00000278616.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000278616	NM_000051.3	805	Cga/Tga																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64136976	64136976	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	172	896	5	ENST00000334205.4:c.1487G>T	p.Arg496Leu	p.R496L	ENST00000334205	NM_003942.2	496	cGc/cTc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108192108	108192108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	140	1012	0	ENST00000278616.4:c.6533C>A	p.Ala2178Asp	p.A2178D	ENST00000278616	NM_000051.3	2178	gCc/gAc																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70118848	70119119	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGCCCCGAGCAGACTTCTGAACGAGAGCGAGAAGCGGCCCTTCGTGGAGGAGGCGGAGCGGCTGCGCGTGCAGCACAAGAAGGACCACCCGGATTACAAGTACCAGCCGCGGCGGAGGAAGTCGGTGAAGAACGGGCAGGCGGAGGCAGAGGAGGCCACGGAGCAGACGCACATCTCCCCCAACGCCATCTTCAAGGCGCTGCAGGCCGACTCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCACTCCCCCGGCGAGCACTCGGGTGAGT	CGCCCCGAGCAGACTTCTGAACGAGAGCGAGAAGCGGCCCTTCGTGGAGGAGGCGGAGCGGCTGCGCGTGCAGCACAAGAAGGACCACCCGGATTACAAGTACCAGCCGCGGCGGAGGAAGTCGGTGAAGAACGGGCAGGCGGAGGCAGAGGAGGCCACGGAGCAGACGCACATCTCCCCCAACGCCATCTTCAAGGCGCTGCAGGCCGACTCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCACTCCCCCGGCGAGCACTCGGGTGAGT	-			P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	16	524	0	ENST00000245479.2:c.432-6_685+12del		p.X144_splice	ENST00000245479	NM_000346.3	144																																													NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49725321	49725321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	144	747	1	ENST00000449682.2:c.104C>T	p.Ser35Leu	p.S35L	ENST00000449682	NM_020998.3	35	tCg/tTg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55214410	55214410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021078-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	151	1031	0	ENST00000275493.2:c.536A>G	p.Asp179Gly	p.D179G	ENST00000275493	NM_005228.3	179	gAc/gGc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0021095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	73	818	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	177	990	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44928872	44928872	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	73	620	2	ENST00000377967.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000377967	NM_021140.2	658	Cga/Tga																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29490337	29490337	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0021095-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	228	648	1	ENST00000358273.4:c.425del	p.Leu142TyrfsTer23	p.L142Yfs*23	ENST00000358273	NM_001042492.2	141	gTt/gt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	200	934	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47044711	47044711	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	95	1170	0	ENST00000329236.7:c.1878del	p.Glu627ArgfsTer97	p.E627Rfs*97	ENST00000329236	NM_001204466.1	626	gCc/gc																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9776131	9776131	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	60	952	0	ENST00000377346.4:c.595A>C	p.Ser199Arg	p.S199R	ENST00000377346	NM_005026.3	199	Agc/Cgc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108150300	108150301	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	179	739	1	ENST00000278616.4:c.3367_3368delinsAA	p.Ala1123Lys	p.A1123K	ENST00000278616	NM_000051.3	1123	GCa/AAa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108160451	108160466	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAAGTGGCTTAGGA	AAAAAGTGGCTTAGGA	-			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	91	926	0	ENST00000278616.4:c.4359_4374del	p.Ile1453MetfsTer15	p.I1453Mfs*15	ENST00000278616	NM_000051.3	1453	atAAAAAGTGGCTTAGGA/at																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37882020	37882020	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201399875		P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	81	1025	4	ENST00000269571.5:c.2786G>A	p.Arg929Gln	p.R929Q	ENST00000269571		929	cGg/cAg																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39637907	39637907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	161	862	1	ENST00000262039.4:c.2324C>T	p.Pro775Leu	p.P775L	ENST00000262039	NM_002647.2	775	cCa/cTa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47155393	47155393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	82	943	0	ENST00000409792.3:c.4688G>T	p.Gly1563Val	p.G1563V	ENST00000409792	NM_014159.6	1563	gGc/gTc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164373	47164403	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGTTTGATTTCTTCATTTAATTCTGTACA	ACTGTTTGATTTCTTCATTTAATTCTGTACA	-			P-0021034-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	58	595	0	ENST00000409792.3:c.1723_1753del	p.Cys575LeufsTer16	p.C575Lfs*16	ENST00000409792	NM_014159.6	575	TGTACAGAATTAAATGAAGAAATCAAACAGTct/ct																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	28	631	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112162804	112162804	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	70	487	0	ENST00000257430.4:c.1409-1G>A		p.X470_splice	ENST00000257430	NM_000038.5	470																																													NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243809341	243809341	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0020987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	60	604	0	ENST00000263826.5:c.285-2A>G		p.X95_splice	ENST00000263826	NM_005465.4	95																																													NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245320	46245339	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAGTACAAACTGTGCCCA	GGGAGTACAAACTGTGCCCA	-			P-0020987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	125	612	0	ENST00000334344.6:c.3414_3433del	p.Gly1139PhefsTer14	p.G1139Ffs*14	ENST00000334344	NM_152641.2	1138	ggGGGAGTACAAACTGTGCCCAtt/ggtt																																												NEWRECORD																																		
EPCAM	0	MSKCC	GRCh37	2	47596649	47596649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	74	465	0	ENST00000263735.4:c.5C>A	p.Ala2Glu	p.A2E	ENST00000263735	NM_002354.2	2	gCg/gAg																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	69928534	69928534	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	82	886	0	ENST00000352241.4:c.354G>C	p.Lys118Asn	p.K118N	ENST00000352241	NM_198159.2	118	aaG/aaC																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174712	112174725	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAATTATAGTGA	ACCAATTATAGTGA	-			P-0020987-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	62	464	0	ENST00000257430.4:c.3423_3436del	p.Asn1142LeufsTer3	p.N1142Lfs*3	ENST00000257430	NM_000038.5	1141	ACCAATTATAGTGAa/a																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			528	194	1055	1	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18499740	18499740	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	70	585	0	ENST00000266497.5:c.1595C>A	p.Ala532Glu	p.A532E	ENST00000266497		532	gCa/gAa																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49425655	49425655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	168	947	0	ENST00000301067.7:c.12833G>A	p.Gly4278Glu	p.G4278E	ENST00000301067	NM_003482.3	4278	gGg/gAg																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988298	36988298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	273	1049	0	ENST00000354822.5:c.355G>T	p.Gly119Cys	p.G119C	ENST00000354822	NM_001079668.2	119	Ggc/Tgc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042467	42042467	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	129	875	0	ENST00000219905.7:c.6662T>C	p.Ile2221Thr	p.I2221T	ENST00000219905	NM_001164273.1	2221	aTc/aCc																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48026928	48026932	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGG	AAAGG	-			P-0020514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			171	178	529	0	ENST00000234420.5:c.1809_1813del	p.Lys603AsnfsTer2	p.K603Nfs*2	ENST00000234420	NM_000179.2	602	tcAAAGGaa/tcaa																																												NEWRECORD																																		
RTEL1	0	MSKCC	GRCh37	20	62326496	62326496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	802	1518	0	ENST00000508582.2:c.3493C>T	p.Pro1165Ser	p.P1165S	ENST00000508582		1165	Ccg/Tcg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0021008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	371	632	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099610	157099610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	50	140	0	ENST00000346085.5:c.547G>A	p.Gly183Ser	p.G183S	ENST00000346085	NM_020732.3	183	Ggc/Agc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8319875	8319875	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	314	585	0	ENST00000356435.5:c.5626G>T	p.Val1876Phe	p.V1876F	ENST00000356435		1876	Gtc/Ttc																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110250373	110250373	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0021009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	54	683	0	ENST00000374672.4:c.302A>G	p.Asp101Gly	p.D101G	ENST00000374672	NM_004235.4	101	gAt/gGt																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139417616	139417616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	68	732	0	ENST00000277541.6:c.428C>T	p.Pro143Leu	p.P143L	ENST00000277541	NM_017617.3	143	cCg/cTg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	27	825	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	14	489	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692793	89692793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	20	534	1	ENST00000371953.3:c.277C>A	p.His93Asn	p.H93N	ENST00000371953	NM_000314.4	93	Cat/Aat																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971190	21971191	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	40	656	0	ENST00000304494.5:c.167dup	p.Ser56ArgfsTer64	p.S56Rfs*64	ENST00000304494	NM_000077.4	56	agc/agGc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971190	21971191	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	40	656	0	ENST00000304494.5:c.167dup	p.Ser56ArgfsTer64	p.S56Rfs*64	ENST00000304494	NM_000077.4	56	agc/agGc																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971190	21971191	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020666-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	40	656	0	ENST00000304494.5:c.167dup	p.Ser56ArgfsTer64	p.S56Rfs*64	ENST00000304494	NM_000077.4	56	agc/agGc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	33	761	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	35	761	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
HIST1H3J	0	MSKCC	GRCh37	6	27858327	27858327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	50	642	2	ENST00000359303.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000359303	NM_003535.2	82	Gac/Aac																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42041800	42041800	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	69	509	0	ENST00000219905.7:c.5995G>T	p.Glu1999Ter	p.E1999*	ENST00000219905	NM_001164273.1	1999	Gag/Tag																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47041439	47041439	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0020717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	49	738	1	ENST00000329236.7:c.1549C>T	p.Gln517Ter	p.Q517*	ENST00000329236	NM_001204466.1	517	Cag/Tag																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76776309	76776309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020717-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	80	948	0	ENST00000373344.5:c.7157G>T	p.Arg2386Leu	p.R2386L	ENST00000373344	NM_000489.3	2386	cGa/cTa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0021040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	62	707	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32914581	32914581	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	85	1106	0	ENST00000380152.3:c.6089A>T	p.Asn2030Ile	p.N2030I	ENST00000380152		2030	aAt/aTt																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10270368	10270368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	109	1100	0	ENST00000340748.4:c.1198G>A	p.Glu400Lys	p.E400K	ENST00000340748		400	Gag/Aag																																												NEWRECORD																																		
SOS1	0	MSKCC	GRCh37	2	39214624	39214624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	86	932	0	ENST00000402219.2:c.3500C>T	p.Ser1167Leu	p.S1167L	ENST00000402219	NM_005633.3	1167	tCa/tTa																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47637282	47637282	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0021040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	134	1046	0	ENST00000233146.2:c.416A>G	p.Asn139Ser	p.N139S	ENST00000233146	NM_000251.2	139	aAt/aGt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952108	178952108	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0021040-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	58	660	0	ENST00000263967.3:c.3163A>T	p.Met1055Leu	p.M1055L	ENST00000263967	NM_006218.2	1055	Atg/Ttg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			270	196	452	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123179050	123179050	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			76	393	447	0	ENST00000218089.9:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000218089	NM_001042749.1	167	Cag/Tag																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	255	446	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36651906	36651906	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			103	531	607	0	ENST00000244741.5:c.28C>T	p.Gln10Ter	p.Q10*	ENST00000244741	NM_000389.4	10	Cag/Tag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27102067	27102067	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			630	70	577	0	ENST00000324856.7:c.4994-1G>T		p.X1665_splice	ENST00000324856	NM_006015.4	1665																																													NEWRECORD																																		
ELF3	0	MSKCC	GRCh37	1	201982323	201982324	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			511	373	731	0	ENST00000359651.3:c.703dupT	p.Cys235LeufsTer66	p.C235Lfs*66	ENST00000359651		234	-/T																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18524142	18524143	+	missense_variant	Missense_Mutation	DNP	CT	CT	AG			P-0020835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			442	114	514	1	ENST00000266497.5:c.1654_1655inv	p.Leu552Ser	p.L552S	ENST00000266497		552	CTt/AGt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245826	46245826	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			353	215	398	0	ENST00000334344.6:c.3920C>G	p.Ser1307Ter	p.S1307*	ENST00000334344	NM_152641.2	1307	tCa/tGa																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46287287	46287300	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGAGAGGATCAA	GAGGAGAGGATCAA	-			P-0020835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	260	565	0	ENST00000334344.6:c.5234_5247del	p.Arg1745LysfsTer10	p.R1745Kfs*10	ENST00000334344	NM_152641.2	1744	ctGAGGAGAGGATCAAga/ctga																																												NEWRECORD																																		
PPARG	0	MSKCC	GRCh37	3	12458321	12458321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	692	612	0	ENST00000287820.6:c.938G>T	p.Cys313Phe	p.C313F	ENST00000287820	NM_015869.4	313	tGc/tTc																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38982123	38982123	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			367	138	347	0	ENST00000357387.3:c.599A>T	p.Glu200Val	p.E200V	ENST00000357387	NM_152756.3	200	gAg/gTg																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020835-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	223	446	0	ENST00000281708.4:c.1513C>A	p.Arg505Ser	p.R505S	ENST00000281708	NM_033632.3	505	Cgc/Agc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	321	755	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0020990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	11	47	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0020990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	201	423	3	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56486587	56486587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	161	764	0	ENST00000267101.3:c.1166C>A	p.Thr389Lys	p.T389K	ENST00000267101	NM_001982.3	389	aCa/aAa																																												NEWRECORD																																		
NFKBIA	0	MSKCC	GRCh37	14	35873625	35873626	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	GTCCCCGTCCTCGGT			P-0020990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	64	379	0	ENST00000216797.5:c.211_225dup	p.Thr71_Asp75dup	p.T71_D75dup	ENST00000216797	NM_020529.2	71	-/ACCGAGGACGGGGAC																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578391	7578393	+	frameshift_variant	Frame_Shift_Del	DEL	TCA	TCA	AT			P-0020990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	412	743	0	ENST00000269305.4:c.537_539delinsAT	p.His179GlnfsTer68	p.H179Qfs*68	ENST00000269305	NM_001126112.2	179	caTGAg/caATg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178947901	178947901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	11	393	0	ENST00000263967.3:c.2776G>A	p.Asp926Asn	p.D926N	ENST00000263967	NM_006218.2	926	Gat/Aat																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	119	634	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	119	634	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0020991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	191	949	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123196830	123196830	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	119	355	0	ENST00000218089.9:c.1717C>T	p.Gln573Ter	p.Q573*	ENST00000218089	NM_001042749.1	573	Cag/Tag																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913409		P-0020991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	100	518	0	ENST00000349496.5:c.134C>G	p.Ser45Cys	p.S45C	ENST00000349496	NM_001904.3	45	tCt/tGt																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971153	21971153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	119	634	0	ENST00000304494.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000304494	NM_000077.4	69	Gag/Tag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44945150	44945150	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	162	390	0	ENST00000377967.4:c.3474T>G	p.Asn1158Lys	p.N1158K	ENST00000377967	NM_021140.2	1158	aaT/aaG																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76939217	76939217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020991-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	51	549	1	ENST00000373344.5:c.1531G>A	p.Glu511Lys	p.E511K	ENST00000373344	NM_000489.3	511	Gaa/Aaa																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0021012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	18	725	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175288	112175288	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0021012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	25	335	0	ENST00000257430.4:c.3997A>T	p.Lys1333Ter	p.K1333*	ENST00000257430	NM_000038.5	1333	Aaa/Taa																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	101	901	1	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120240	70120241	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0021012-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1004	99	1030	0	ENST00000245479.2:c.1246dup	p.Gln416ProfsTer162	p.Q416Pfs*162	ENST00000245479	NM_000346.3	414	-/C																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	32	692	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	321	636	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508533	106508533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	21	246	1	ENST00000359195.3:c.527C>T	p.Thr176Met	p.T176M	ENST00000359195	NM_002649.2	176	aCg/aTg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100934	27100952	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCCAGCCCAGCCCCAGC	CCCCCAGCCCAGCCCCAGC	-			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	228	635	0	ENST00000324856.7:c.4217_4235del	p.Pro1406LeufsTer69	p.P1406Lfs*69	ENST00000324856	NM_006015.4	1406	CCCCCAGCCCAGCCCCAGCct/ct																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102196062	102196062	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	25	359	0	ENST00000263464.3:c.822G>T	p.Glu274Asp	p.E274D	ENST00000263464	NM_001165.4	274	gaG/gaT																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23646921	23646921	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	63	722	0	ENST00000261584.4:c.946C>A	p.Pro316Thr	p.P316T	ENST00000261584	NM_024675.3	316	Ccc/Acc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72832563	72832563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	29	451	0	ENST00000268489.5:c.4018C>A	p.Gln1340Lys	p.Q1340K	ENST00000268489	NM_006885.3	1340	Caa/Aaa																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546784	9546784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			115	89	352	0	ENST00000353224.5:c.1238C>T	p.Pro413Leu	p.P413L	ENST00000353224	NM_177990.2	413	cCg/cTg																																												NEWRECORD																																		
DCUN1D1	0	MSKCC	GRCh37	3	182662958	182662958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	37	419	1	ENST00000292782.4:c.704C>A	p.Ala235Glu	p.A235E	ENST00000292782	NM_020640.2	235	gCa/gAa																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152129363	152129363	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	70	553	0	ENST00000206249.3:c.316A>C	p.Ser106Arg	p.S106R	ENST00000206249	NM_000125.3	106	Agc/Cgc																																												NEWRECORD																																		
LYN	0	MSKCC	GRCh37	8	56863037	56863037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	301	607	0	ENST00000519728.1:c.304G>A	p.Ala102Thr	p.A102T	ENST00000519728	NM_002350.3	102	Gca/Aca																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117859844	117859844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	37	346	0	ENST00000297338.2:c.1791C>A	p.Phe597Leu	p.F597L	ENST00000297338	NM_006265.2	597	ttC/ttA																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974603	21974831	+	splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	TCCAATTCCCCTGCAAACTTCGTCCTCCAGAGTCGCCCGCCATCCCCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGC	TCCAATTCCCCTGCAAACTTCGTCCTCCAGAGTCGCCCGCCATCCCCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGC	-			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	124	811	0	ENST00000304494.5:c.-5_150+74del		p.X2_splice	ENST00000304494	NM_000077.4	2																																													NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974603	21974831	+	splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	TCCAATTCCCCTGCAAACTTCGTCCTCCAGAGTCGCCCGCCATCCCCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGC	TCCAATTCCCCTGCAAACTTCGTCCTCCAGAGTCGCCCGCCATCCCCTGCTCCCGCTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGC	-			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	124	811	0	ENST00000304494.5:c.-5_150+74del		p.X2_splice	ENST00000304494	NM_000077.4	2																																													NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70339940	70339940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	29	575	1	ENST00000374080.3:c.473G>T	p.Trp158Leu	p.W158L	ENST00000374080		158	tGg/tTg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42003252	42003253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	109	833	0	ENST00000219905.7:c.2790dup	p.His931SerfsTer7	p.H931Sfs*7	ENST00000219905	NM_001164273.1	930	tct/tcTt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187521196	187521197	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0020993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	339	855	0	ENST00000441802.2:c.11957_11958dup	p.Leu3987SerfsTer4	p.L3987Sfs*4	ENST00000441802	NM_005245.3	3986	-/AG																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39932628	39932629	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0020993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	44	536	0	ENST00000378444.4:c.1970dup	p.Tyr657Ter	p.Y657*	ENST00000378444	NM_001123385.1	657	tac/taAc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	99	855	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	232	880	1	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0020952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	216	531	2	ENST00000329236.7:c.1459+1G>A		p.X487_splice	ENST00000329236	NM_001204466.1	487																																													NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11138473	11138473	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	98	659	1	ENST00000344626.4:c.3229C>T	p.Arg1077Ter	p.R1077*	ENST00000344626	NM_003072.3	1077	Cga/Tga																																												NEWRECORD																																		
SPRED1	0	MSKCC	GRCh37	15	38643807	38643807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	248	949	2	ENST00000299084.4:c.1277G>T	p.Cys426Phe	p.C426F	ENST00000299084	NM_152594.2	426	tGc/tTc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765047	66765047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017478-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			768	60	1040	1	ENST00000374690.3:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000374690	NM_000044.3	20	cGa/cAa																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39742646	39742646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017478-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			385	22	486	1	ENST00000361337.2:c.1489G>A	p.Glu497Lys	p.E497K	ENST00000361337	NM_003286.2	497	Gaa/Aaa																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50467652	50467652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0017478-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			402	112	658	0	ENST00000331340.3:c.887G>A	p.Ser296Asn	p.S296N	ENST00000331340	NM_006060.4	296	aGc/aAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579427	7579427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	91	913	3	ENST00000269305.4:c.260C>T	p.Pro87Leu	p.P87L	ENST00000269305	NM_001126112.2	87	cCa/cTa																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0021048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	98	771	0	ENST00000269305.4:c.681dup	p.Asp228Ter	p.D228*	ENST00000269305	NM_001126112.2	227	-/T																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48026137	48026137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021038-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	55	544	0	ENST00000234420.5:c.1015G>A	p.Ala339Thr	p.A339T	ENST00000234420	NM_000179.2	339	Gct/Act																																												NEWRECORD																																		
CRLF2	0	MSKCC	GRCh37	X	1325416	1325416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	66	863	0	ENST00000381566.1:c.259G>A	p.Asp87Asn	p.D87N	ENST00000381566		87	Gac/Aac																																												NEWRECORD																																		
RPS6KB2	0	MSKCC	GRCh37	11	67200860	67200860	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1203	78	895	0	ENST00000312629.5:c.851del	p.Gly284AlafsTer21	p.G284Afs*21	ENST00000312629	NM_003952.2	283	aGg/ag																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118343775	118343775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	511	836	0	ENST00000534358.1:c.1901C>T	p.Ser634Leu	p.S634L	ENST00000534358	NM_005933.3	634	tCa/tTa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32912839	32912839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	164	590	0	ENST00000380152.3:c.4347C>G	p.Phe1449Leu	p.F1449L	ENST00000380152		1449	ttC/ttG																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32912895	32912895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	162	521	0	ENST00000380152.3:c.4403C>G	p.Ser1468Cys	p.S1468C	ENST00000380152		1468	tCt/tGt																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78617548	78617548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	44	706	0	ENST00000306801.3:c.286C>G	p.Gln96Glu	p.Q96E	ENST00000306801	NM_020761.2	96	Cag/Gag																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123205017	123205017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	52	521	2	ENST00000218089.9:c.2377G>A	p.Asp793Asn	p.D793N	ENST00000218089	NM_001042749.1	793	Gat/Aat																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10599964	10599965	+	missense_variant	Missense_Mutation	DNP	CG	CG	GA			P-0021054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	256	1174	1	ENST00000171111.5:c.1611_1612delinsTC	p.Asp538His	p.D538H	ENST00000171111	NM_203500.1	537	taCGat/taTCat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578376	7578379	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0020954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	182	736	0	ENST00000269305.4:c.551_554delATAG	p.Asp184AlafsTer62	p.D184Afs*62	ENST00000269305	NM_001126112.2	184	gATAGc/gc																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	156	717	1	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	159	607	1	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52651532	52651532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	137	692	2	ENST00000394830.3:c.1564C>T	p.Arg522Ter	p.R522*	ENST00000394830	NM_018313.4	522	Cga/Tga																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	138	658	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	306	744	3	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245																																													NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29657313	29657313	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	102	670	1	ENST00000358273.4:c.5610-1G>T		p.X1870_splice	ENST00000358273	NM_001042492.2	1870																																													NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108143289	108143291	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	188	595	0	ENST00000278616.4:c.3108_3110del	p.Ser1037del	p.S1037del	ENST00000278616	NM_000051.3	1036	ttCTCt/ttt																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73335623	73335623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	63	444	1	ENST00000377767.4:c.2548G>T	p.Ala850Ser	p.A850S	ENST00000377767	NM_014953.3	850	Gcc/Tcc																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73349420	73349420	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	91	692	0	ENST00000377767.4:c.916T>C	p.Ser306Pro	p.S306P	ENST00000377767	NM_014953.3	306	Tct/Cct																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29483016	29483016	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	165	589	0	ENST00000358273.4:c.76G>T	p.Gly26Ter	p.G26*	ENST00000358273	NM_001042492.2	26	Gga/Tga																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40727066	40727066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	89	585	0	ENST00000373198.4:c.3898G>T	p.Ala1300Ser	p.A1300S	ENST00000373198	NM_133170.3	1300	Gcc/Tcc																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81339481	81339481	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	169	647	0	ENST00000222390.5:c.1523T>A	p.Met508Lys	p.M508K	ENST00000222390	NM_000601.4	508	aTg/aAg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47044925	47044925	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020955-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	300	509	3	ENST00000329236.7:c.2017G>T	p.Glu673Ter	p.E673*	ENST00000329236	NM_001204466.1	673	Gag/Tag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0018860-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			549	28	763	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0021056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	549	1117	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc																																												NEWRECORD																																		
MUTYH	0	MSKCC	GRCh37	1	45795094	45795094	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0021056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	103	702	1	ENST00000372115.3:c.1492C>T	p.Gln498Ter	p.Q498*	ENST00000372115	NM_001048171.1	498	Cag/Tag																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118375812	118375831	+	frameshift_variant	Frame_Shift_Del	DEL	ACCACTCCACCCCACCTGAA	ACCACTCCACCCCACCTGAA	-			P-0021056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	199	811	0	ENST00000534358.1:c.9205_9224del	p.Thr3069AlafsTer4	p.T3069Afs*4	ENST00000534358	NM_005933.3	3069	ACCACTCCACCCCACCTGAAg/g																																												NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0021057-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	267	981	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	141	666	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
TP53BP1	0	MSKCC	GRCh37	15	43708603	43708603	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020961-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	291	653	2	ENST00000382044.4:c.4693G>T	p.Gly1565Ter	p.G1565*	ENST00000382044	NM_001141980.1	1565	Gga/Tga																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	72	601	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	144	737	2	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112015732	112015732	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	60	442	0	ENST00000368678.4:c.1111-1G>A		p.X371_splice	ENST00000368678		371																																													NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27206782	27206782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	103	449	0	ENST00000380036.4:c.2567G>A	p.Arg856Lys	p.R856K	ENST00000380036	NM_000459.3	856	aGa/aAa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44950040	44950041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			85	54	321	0	ENST00000377967.4:c.3811dup	p.Val1271GlyfsTer20	p.V1271Gfs*20	ENST00000377967	NM_021140.2	1270	atg/atGg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	133	872	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	96	715	1	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	96	715	1	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0021044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	147	791	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921555	178921555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	54	523	1	ENST00000263967.3:c.1037T>A	p.Val346Glu	p.V346E	ENST00000263967	NM_006218.2	346	gTa/gAa																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47044898	47044898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0021044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	329	1114	1	ENST00000329236.7:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000329236	NM_001204466.1	664	Cag/Tag																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0021044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	96	715	1	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64137092	64137092	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0021044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			496	89	734	1	ENST00000334205.4:c.1602+1G>T		p.X534_splice	ENST00000334205	NM_003942.2	534																																													NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59885896	59885896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	110	837	0	ENST00000259008.2:c.850G>T	p.Val284Phe	p.V284F	ENST00000259008	NM_032043.2	284	Gtc/Ttc																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100611919	100611919	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021044-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	267	935	0	ENST00000308731.7:c.1202A>T	p.Asp401Val	p.D401V	ENST00000308731	NM_000061.2	401	gAc/gTc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			431	293	736	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453138	140453139	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			560	792	650	0	ENST00000288602.6:c.1794_1796dupTAC	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	aca/acTACa																																												NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	33	597	1	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9561340	9561340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	330	610	0	ENST00000353224.5:c.442G>A	p.Glu148Lys	p.E148K	ENST00000353224	NM_177990.2	148	Gag/Aag																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123244982	123244982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			176	436	793	0	ENST00000358487.5:c.2122C>T	p.Pro708Ser	p.P708S	ENST00000358487	NM_000141.4	708	Ccc/Tcc																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65325833	65325833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	307	594	2	ENST00000342505.4:c.1289C>T	p.Pro430Leu	p.P430L	ENST00000342505	NM_002227.2	430	cCg/cTg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692986	89693051	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGTAAGGACCAGAGACAAAAAGGTAAGTTATTTTTTGATGTTTTTCCTTTCCTCTTCCTGGATCT	AAGTAAGGACCAGAGACAAAAAGGTAAGTTATTTTTTGATGTTTTTCCTTTCCTCTTCCTGGATCT	-			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			112	165	630	1	ENST00000371953.3:c.470_492+43del		p.X157_splice	ENST00000371953	NM_000314.4	157																																													NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857149	9857149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			389	261	458	0	ENST00000330684.3:c.4252G>A	p.Gly1418Ser	p.G1418S	ENST00000330684	NM_001134407.1	1418	Ggc/Agc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15995216	15995216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			668	465	778	1	ENST00000268712.3:c.2977C>T	p.Pro993Ser	p.P993S	ENST00000268712	NM_006311.3	993	Cca/Tca																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78897322	78897322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			675	414	786	2	ENST00000306801.3:c.2657C>T	p.Ser886Phe	p.S886F	ENST00000306801	NM_020761.2	886	tCc/tTc																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1623990	1623991	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			597	346	774	1	ENST00000344749.5:c.508_509delinsTT	p.Pro170Phe	p.P170F	ENST00000344749	NM_001136139.2	170	CCc/TTc																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10260139	10260140	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			604	402	794	1	ENST00000340748.4:c.2527_2528del	p.Trp843GlyfsTer27	p.W843Gfs*27	ENST00000340748		843	TGg/g																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15278102	15278102	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143939165		P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			692	439	1001	0	ENST00000263388.2:c.5320G>A	p.Asp1774Asn	p.D1774N	ENST00000263388	NM_000435.2	1774	Gac/Aac																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52723473	52723473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			578	359	757	0	ENST00000322088.6:c.1334C>T	p.Ser445Phe	p.S445F	ENST00000322088	NM_014225.5	445	tCc/tTc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29473983	29473983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			634	394	884	3	ENST00000389048.3:c.2192C>T	p.Thr731Ile	p.T731I	ENST00000389048	NM_004304.4	731	aCc/aTc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212566814	212566814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	263	459	1	ENST00000342788.4:c.1367G>A	p.Gly456Glu	p.G456E	ENST00000342788	NM_005235.2	456	gGa/gAa																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32180624	32180624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			849	353	641	1	ENST00000375023.3:c.2503G>A	p.Gly835Ser	p.G835S	ENST00000375023	NM_004557.3	835	Ggc/Agc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116395430	116395430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	361	704	0	ENST00000397752.3:c.1723C>T	p.Leu575Phe	p.L575F	ENST00000397752	NM_000245.2	575	Ctt/Ttt																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139399273	139399273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020641-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			253	525	985	1	ENST00000277541.6:c.4870G>A	p.Glu1624Lys	p.E1624K	ENST00000277541	NM_017617.3	1624	Gag/Aag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	99	921	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56440943	56440943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs786205215		P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	79	837	4	ENST00000407977.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000407977		132	Cga/Tga																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41275669	41275669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	76	702	1	ENST00000349496.5:c.1564G>A	p.Ala522Thr	p.A522T	ENST00000349496	NM_001904.3	522	Gca/Aca																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106504	27106505	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	95	930	0	ENST00000324856.7:c.6117dup	p.Gly2040ArgfsTer59	p.G2040Rfs*59	ENST00000324856	NM_006015.4	2039	caa/cAaa																																												NEWRECORD																																		
PRKD1	0	MSKCC	GRCh37	14	30107994	30107994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	98	838	0	ENST00000331968.5:c.813C>G	p.His271Gln	p.H271Q	ENST00000331968	NM_002742.2	271	caC/caG																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30143176	30143176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	69	833	0	ENST00000389048.3:c.350C>T	p.Pro117Leu	p.P117L	ENST00000389048	NM_004304.4	117	cCg/cTg																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49412970	49412970	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020922-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	109	1018	0	ENST00000418115.1:c.53A>C	p.Lys18Thr	p.K18T	ENST00000418115	NM_001664.2	18	aAg/aCg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0021030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			23	366	775	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020919-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	102	898	1	ENST00000347630.2:c.392G>T	p.Trp131Leu	p.W131L	ENST00000347630	NM_001007230.1	131	tGg/tTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	482	1050	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0020926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	9	719	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3778425	3778436	+	inframe_deletion	In_Frame_Del	DEL	TGTTGCTGCTGC	TGTTGCTGCTGC	-			P-0020926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	100	1134	0	ENST00000262367.5:c.6612_6623delGCAGCAGCAACA	p.Gln2213_Gln2216del	p.Q2213_Q2216del	ENST00000262367	NM_004380.2	2204	caGCAGCAGCAACAa/caa																																												NEWRECORD																																		
TNFRSF14	0	MSKCC	GRCh37	1	2494588	2494588	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			707	60	870	0	ENST00000355716.4:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000355716	NM_003820.2	243	cGg/cAg																																												NEWRECORD																																		
RPS6KB2	0	MSKCC	GRCh37	11	67200918	67200918	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	88	1009	0	ENST00000312629.5:c.906G>C	p.Lys302Asn	p.K302N	ENST00000312629	NM_003952.2	302	aaG/aaC																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10597444	10597444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020926-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1178	305	1215	2	ENST00000171111.5:c.1759G>A	p.Asp587Asn	p.D587N	ENST00000171111	NM_203500.1	587	Gat/Aat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	62	857	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0020924-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	58	561	2	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			469	327	1109	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175223	112175223	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			182	104	361	0	ENST00000257430.4:c.3933del	p.Ile1311MetfsTer10	p.I1311Mfs*10	ENST00000257430	NM_000038.5	1311	aTt/at																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49426736	49426771	+	inframe_deletion	In_Frame_Del	DEL	GCTGCTGCTGCTGCTGAAGTTGCTGTTGCTGTTGCA	GCTGCTGCTGCTGCTGAAGTTGCTGTTGCTGTTGCA	-			P-0009826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			362	46	472	0	ENST00000301067.7:c.11717_11752del	p.Leu3906_Gln3917del	p.L3906_Q3917del	ENST00000301067	NM_003482.3	3906	cTGCAACAGCAACAGCAACTTCAGCAGCAGCAGCAGCag/cag																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86686656	86686656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009826-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			452	31	680	0	ENST00000274376.6:c.3100C>T	p.Gln1034Ter	p.Q1034*	ENST00000274376	NM_002890.2	1034	Caa/Taa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0021026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	22	797	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	33	882	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49397650	49397650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	32	746	0	ENST00000418115.1:c.574G>A	p.Val192Ile	p.V192I	ENST00000418115	NM_001664.2	192	Gtc/Atc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180045901	180045901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	27	649	1	ENST00000261937.6:c.2870G>A	p.Arg957His	p.R957H	ENST00000261937	NM_182925.4	957	cGc/cAc																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49445349	49445349	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0021025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	66	1257	0	ENST00000301067.7:c.2117del	p.Pro706LeufsTer224	p.P706Lfs*224	ENST00000301067	NM_003482.3	706	cCt/ct																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	148	443	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	91	711	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	155	882	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	186	439	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148511094	148511094	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	106	518	0	ENST00000320356.2:c.1808del	p.Asn603MetfsTer72	p.N603Mfs*72	ENST00000320356	NM_004456.4	603	aAt/at																																												NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	114	1018	4	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	137	1001	7	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	243	621	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	98	684	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	103	601	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	156	931	2	ENST00000334205.4:c.2287delC	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42798822	42798822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	387	1042	2	ENST00000575354.2:c.4394G>A	p.Arg1465His	p.R1465H	ENST00000575354	NM_015125.3	1465	cGc/cAc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589582	67589582	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	78	454	0	ENST00000274335.5:c.1345T>A	p.Leu449Ile	p.L449I	ENST00000274335		449	Tta/Ata																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12626461	12626461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	91	701	0	ENST00000251849.4:c.1688G>A	p.Arg563Gln	p.R563Q	ENST00000251849	NM_002880.3	563	cGa/cAa																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11984672	11984672	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	61	319	0	ENST00000353533.5:c.219-1G>C		p.X73_splice	ENST00000353533	NM_003010.3	73																																													NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	442811	442811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	72	481	0	ENST00000399788.2:c.1495del	p.Glu499SerfsTer19	p.E499Sfs*19	ENST00000399788	NM_001042603.1	499	Gag/ag																																												NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	219	1324	8	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																												NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	144	908	6	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																												NEWRECORD																																		
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	160	893	8	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																												NEWRECORD																																		
TP53BP1	0	MSKCC	GRCh37	15	43708596	43708596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	132	715	0	ENST00000382044.4:c.4700G>T	p.Arg1567Met	p.R1567M	ENST00000382044	NM_001141980.1	1567	aGg/aTg																																												NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	120	896	1	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5223086	5223086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	197	1181	5	ENST00000357368.4:c.2717C>T	p.Ala906Val	p.A906V	ENST00000357368	NM_002850.3	906	gCg/gTg																																												NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36223002	36223002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	223	1244	3	ENST00000222270.7:c.5636del	p.Gly1879ValfsTer16	p.G1879Vfs*16	ENST00000222270	NM_014727.1	1877	ttG/tt																																												NEWRECORD																																		
TAP1	0	MSKCC	GRCh37	6	32814948	32814948	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	137	839	0	ENST00000354258.4:c.2117del	p.Gly706ValfsTer12	p.G706Vfs*12	ENST00000354258	NM_000593.5	706	gGt/gt																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	114	830	3	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																												NEWRECORD																																		
HLA-B	0	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	136	730	0	ENST00000412585.2:c.626dupC	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																												NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248285	59248285	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			103	28	143	0	ENST00000371222.2:c.458del	p.Gly153AlafsTer29	p.G153Afs*29	ENST00000371222	NM_002228.3	153	gGc/gc																																												NEWRECORD																																		
TNFRSF14	0	MSKCC	GRCh37	1	2494665	2494665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	151	973	3	ENST00000355716.4:c.805G>A	p.Val269Met	p.V269M	ENST00000355716	NM_003820.2	269	Gtg/Atg																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36941052	36941052	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	178	1016	2	ENST00000361632.4:c.287A>G	p.Gln96Arg	p.Q96R	ENST00000361632		96	cAg/cGg																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46726267	46726267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	146	784	2	ENST00000371975.4:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000371975	NM_003579.3	154	cGg/cAg																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248010	59248011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	149	907	0	ENST00000371222.2:c.732dup	p.Ile245HisfsTer65	p.I245Hfs*65	ENST00000371222	NM_002228.3	244	-/C																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120478217	120478217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	71	510	0	ENST00000256646.2:c.3533G>T	p.Gly1178Val	p.G1178V	ENST00000256646	NM_024408.3	1178	gGc/gTc																																												NEWRECORD																																		
FGF4	0	MSKCC	GRCh37	11	69588172	69588172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	177	982	1	ENST00000168712.1:c.526G>A	p.Gly176Ser	p.G176S	ENST00000168712	NM_002007.2	176	Ggc/Agc																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119158638	119158638	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	151	832	0	ENST00000264033.4:c.2018T>G	p.Ile673Ser	p.I673S	ENST00000264033	NM_005188.3	673	aTt/aGt																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133245474	133245474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	125	769	1	ENST00000320574.5:c.1846C>T	p.Arg616Cys	p.R616C	ENST00000320574	NM_006231.2	616	Cgc/Tgc																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134420	41134420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	145	739	0	ENST00000379561.5:c.1208C>T	p.Pro403Leu	p.P403L	ENST00000379561	NM_002015.3	403	cCg/cTg																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81422059	81422059	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	117	652	0	ENST00000298171.2:c.35T>C	p.Leu12Pro	p.L12P	ENST00000298171	NM_000369.2	12	cTg/cCg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828282	72828282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	156	729	0	ENST00000268489.5:c.8299G>A	p.Gly2767Arg	p.G2767R	ENST00000268489	NM_006885.3	2767	Gga/Aga																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81927337	81927337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	216	928	0	ENST00000359376.3:c.1010G>A	p.Arg337Gln	p.R337Q	ENST00000359376	NM_002661.3	337	cGg/cAg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89351205	89351205	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	169	904	1	ENST00000301030.4:c.1745A>G	p.Glu582Gly	p.E582G	ENST00000301030	NM_001256183.1	582	gAg/gGg																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15938157	15938157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	130	580	0	ENST00000268712.3:c.7057G>A	p.Val2353Ile	p.V2353I	ENST00000268712	NM_006311.3	2353	Gtc/Atc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15961294	15961294	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	149	728	0	ENST00000268712.3:c.6095del	p.Pro2032LeufsTer17	p.P2032Lfs*17	ENST00000268712	NM_006311.3	2032	cCt/ct																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17117042	17117042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	167	948	0	ENST00000285071.4:c.1667G>A	p.Gly556Asp	p.G556D	ENST00000285071	NM_144997.5	556	gGc/gAc																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37676243	37676243	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			771	199	845	1	ENST00000447079.4:c.2998A>G	p.Met1000Val	p.M1000V	ENST00000447079	NM_015083.1	1000	Atg/Gtg																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41246531	41246532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	78	1010	3	ENST00000357654.3:c.1016dup	p.Val340GlyfsTer6	p.V340Gfs*6	ENST00000357654	NM_007294.3	339	aag/aaAg																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39537693	39537693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	32	450	1	ENST00000262039.4:c.227C>T	p.Thr76Ile	p.T76I	ENST00000262039	NM_002647.2	76	aCa/aTa																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11097659	11097659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	83	1156	0	ENST00000344626.4:c.839C>A	p.Pro280His	p.P280H	ENST00000344626	NM_003072.3	280	cCt/cAt																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15353959	15353959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	49	301	1	ENST00000263377.2:c.2921C>A	p.Pro974Gln	p.P974Q	ENST00000263377	NM_058243.2	974	cCg/cAg																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25497933	25497934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	90	695	0	ENST00000264709.3:c.515dup	p.Gly173TrpfsTer43	p.G173Wfs*43	ENST00000264709	NM_175629.2	172	ggt/ggGt																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25966238	25966238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	158	772	0	ENST00000435504.4:c.2968A>G	p.Met990Val	p.M990V	ENST00000435504		990	Atg/Gtg																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25966733	25966733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	115	849	0	ENST00000435504.4:c.2473A>G	p.Ser825Gly	p.S825G	ENST00000435504		825	Agt/Ggt																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29446251	29446251	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	162	816	0	ENST00000389048.3:c.3316A>G	p.Ser1106Gly	p.S1106G	ENST00000389048	NM_004304.4	1106	Agt/Ggt																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61721099	61721099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	120	723	0	ENST00000401558.2:c.1175C>T	p.Pro392Leu	p.P392L	ENST00000401558	NM_003400.3	392	cCg/cTg																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198288564	198288564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	138	879	3	ENST00000335508.6:c.163G>A	p.Val55Met	p.V55M	ENST00000335508	NM_012433.2	55	Gtg/Atg																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46279789	46279789	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	149	656	0	ENST00000371998.3:c.3715C>T	p.Arg1239Ter	p.R1239*	ENST00000371998		1239	Cga/Tga																																												NEWRECORD																																		
MAPK1	0	MSKCC	GRCh37	22	22160198	22160198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	98	452	0	ENST00000215832.6:c.433G>A	p.Val145Ile	p.V145I	ENST00000215832	NM_002745.4	145	Gtt/Att																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37035134	37035204	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAAAGAGATGATTGAGAACTGGTACGGAGGGAGTCGAGCCGGGCTCACTTAAGGGCTACGACTTAACGGGC	CAAAGAGATGATTGAGAACTGGTACGGAGGGAGTCGAGCCGGGCTCACTTAAGGGCTACGACTTAACGGGC	AT			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	97	506	2	ENST00000231790.2:c.96_116+50delinsAT		p.X32_splice	ENST00000231790	NM_000249.3	32																																													NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49933438	49933438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	147	879	1	ENST00000296474.3:c.2752delC	p.Leu918CysfsTer18	p.L918Cfs*18	ENST00000296474	NM_002447.2	918	Ctg/tg																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185165701	185165701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	110	595	0	ENST00000265026.3:c.976C>T	p.Arg326Trp	p.R326W	ENST00000265026	NM_004721.4	326	Cgg/Tgg																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185191001	185191001	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	254	1292	2	ENST00000265026.3:c.1882T>C	p.Tyr628His	p.Y628H	ENST00000265026	NM_004721.4	628	Tac/Cac																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66286238	66286238	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	92	611	0	ENST00000273854.3:c.1448del	p.Asn483ThrfsTer18	p.N483Tfs*18	ENST00000273854	NM_004439.5	483	aAc/ac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187538990	187538990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	160	779	1	ENST00000441802.2:c.8750G>A	p.Arg2917Gln	p.R2917Q	ENST00000441802	NM_005245.3	2917	cGa/cAa																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294318	1294318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	154	882	2	ENST00000310581.5:c.683C>T	p.Ala228Val	p.A228V	ENST00000310581	NM_198253.2	228	gCc/gTc																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294696	1294696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	166	771	2	ENST00000310581.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000310581	NM_198253.2	102	gCg/gTg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112164604	112164604	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	87	404	0	ENST00000257430.4:c.1682delA	p.Lys561ArgfsTer9	p.K561Rfs*9	ENST00000257430	NM_000038.5	560	Aaa/aa																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30672067	30672067	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	143	1051	0	ENST00000376406.3:c.4893del	p.Lys1632SerfsTer44	p.K1632Sfs*44	ENST00000376406	NM_014641.2	1631	ccC/cc																																												NEWRECORD																																		
HLA-B	0	MSKCC	GRCh37	6	31323092	31323093	+	splice_donor_variant	Splice_Site	INS	-	-	C			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	128	924	0	ENST00000412585.2:c.895+1dupG		p.X299_splice	ENST00000412585	NM_005514.6	299																																													NEWRECORD																																		
TAP1	0	MSKCC	GRCh37	6	32818837	32818837	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	170	945	3	ENST00000354258.4:c.1114C>T	p.Arg372Ter	p.R372*	ENST00000354258	NM_000593.5	372	Cga/Tga																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81392174	81392174	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	60	446	0	ENST00000222390.5:c.103del	p.Arg35GlufsTer16	p.R35Efs*16	ENST00000222390	NM_000601.4	35	Aga/ga																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116412639	116412641	+	intron_variant	Intron	DEL	TGT	TGT	-			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	160	1152	0	ENST00000397752.3:c.3028+600_3028+602del		p.*1010*	ENST00000397752	NM_000245.2																																														NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8486350	8486350	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	48	344	0	ENST00000356435.5:c.2468-1G>A		p.X823_splice	ENST00000356435		823																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	544	790	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43812204	43812204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	182	794	2	ENST00000372470.3:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000372470	NM_005373.2	357	Cga/Tga																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29130646	29130646	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	162	633	0	ENST00000328354.6:c.64del	p.His22MetfsTer39	p.H22Mfs*39	ENST00000328354	NM_007194.3	22	Cat/at																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32166227	32166227	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1272	192	1008	0	ENST00000375023.3:c.4727A>G	p.Glu1576Gly	p.E1576G	ENST00000375023	NM_004557.3	1576	gAa/gGa																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6048631	6048631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020965-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1359	246	768	0	ENST00000265849.7:c.20C>G	p.Ser7Trp	p.S7W	ENST00000265849	NM_000535.5	7	tCg/tGg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	225	949	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	338	1134	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	69	536	1	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135779180	135779180	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200827913		P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	46	628	2	ENST00000298552.3:c.2066G>A	p.Arg689His	p.R689H	ENST00000298552	NM_001162426.1	689	cGc/cAc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8636766	8636766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	40	740	0	ENST00000356435.5:c.143C>T	p.Thr48Met	p.T48M	ENST00000356435		48	aCg/aTg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112448	115112448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	102	935	1	ENST00000257566.3:c.1292C>T	p.Ala431Val	p.A431V	ENST00000257566	NM_016569.3	431	gCg/gTg																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12028610	12028610	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	83	519	1	ENST00000353533.5:c.814-1G>A		p.X272_splice	ENST00000353533	NM_003010.3	272																																													NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36210899	36210899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	75	919	2	ENST00000222270.7:c.650G>A	p.Arg217Gln	p.R217Q	ENST00000222270	NM_014727.1	217	cGg/cAg																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25965019	25965019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	34	686	2	ENST00000435504.4:c.4187C>T	p.Thr1396Met	p.T1396M	ENST00000435504		1396	aCg/aTg																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225379486	225379486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	113	657	1	ENST00000264414.4:c.382C>A	p.Arg128Ser	p.R128S	ENST00000264414	NM_003590.4	128	Cgt/Agt																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56111759	56111759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			75	27	96	0	ENST00000399503.3:c.359G>A	p.Gly120Asp	p.G120D	ENST00000399503	NM_005921.1	120	gGc/gAc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	77	679	0	ENST00000304494.5:c.281T>G	p.Leu94Arg	p.L94R	ENST00000304494	NM_000077.4	94	cTg/cGg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971077	21971077	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	77	679	0	ENST00000304494.5:c.281T>G	p.Leu94Arg	p.L94R	ENST00000304494	NM_000077.4	94	cTg/cGg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971084	21971109	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGGAAGCCCTCCCGGGCAGCGTCG	CCAGGAAGCCCTCCCGGGCAGCGTCG	A			P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	42	674	0	ENST00000304494.5:c.249_274delinsT	p.Asp84ThrfsTer54	p.D84Tfs*54	ENST00000304494	NM_000077.4	83	caCGACGCTGCCCGGGAGGGCTTCCTGGac/caTac																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971084	21971109	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGGAAGCCCTCCCGGGCAGCGTCG	CCAGGAAGCCCTCCCGGGCAGCGTCG	A			P-0020977-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	42	674	0	ENST00000304494.5:c.249_274delinsT	p.Asp84ThrfsTer54	p.D84Tfs*54	ENST00000304494	NM_000077.4	83	caCGACGCTGCCCGGGAGGGCTTCCTGGac/caTac																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0021029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	42	865	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0021029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	47	845	0	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8484221	8484221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	31	751	0	ENST00000356435.5:c.3311C>A	p.Ala1104Glu	p.A1104E	ENST00000356435		1104	gCa/gAa																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48649598	48649598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0021029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	51	913	1	ENST00000376670.3:c.82C>A	p.Pro28Thr	p.P28T	ENST00000376670	NM_002049.3	28	Cca/Aca																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70349597	70349597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0021029-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	40	844	2	ENST00000374080.3:c.3759G>T	p.Glu1253Asp	p.E1253D	ENST00000374080		1253	gaG/gaT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579327	7579331	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGG	CTTGG	-			P-0020968-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	156	745	0	ENST00000269305.4:c.356_360del	p.Ala119ValfsTer28	p.A119Vfs*28	ENST00000269305	NM_001126112.2	119	gCCAAG/g																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64575540	64575540	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	233	936	2	ENST00000337652.1:c.492del	p.Phe164LeufsTer26	p.F164Lfs*26	ENST00000337652	NM_130803.2	164	ttT/tt																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81331911	81331911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	27	507	0	ENST00000222390.5:c.2173G>T	p.Val725Leu	p.V725L	ENST00000222390	NM_000601.4	725	Gta/Tta																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76907819	76907819	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	55	161	0	ENST00000373344.5:c.4342del	p.Glu1448LysfsTer42	p.E1448Kfs*42	ENST00000373344	NM_000489.3	1448	Gaa/aa																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	116	956	1	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	311	1016	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720670	89720670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	140	341	0	ENST00000371953.3:c.821G>A	p.Trp274Ter	p.W274*	ENST00000371953	NM_000314.4	274	tGg/tAg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591115	67591116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	80	486	0	ENST00000274335.5:c.1710dupT	p.Ile571TyrfsTer31	p.I571Yfs*31	ENST00000274335		570	ctt/cTtt																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371810	55371831	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCCCCGAGGGCGGCCGCGT	TGGGCCCCGAGGGCGGCCGCGT	-			P-0020969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	82	452	0	ENST00000297316.4:c.500_521del	p.Leu167ArgfsTer213	p.L167Rfs*213	ENST00000297316	NM_022454.3	167	cTGGGCCCCGAGGGCGGCCGCGTg/cg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023867	27023868	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	68	498	0	ENST00000324856.7:c.975dup	p.Gly326ArgfsTer74	p.G326Rfs*74	ENST00000324856	NM_006015.4	325	gcc/gCcc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717617	89717617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			625	84	753	0	ENST00000371953.3:c.642del	p.Gln214HisfsTer7	p.Q214Hfs*7	ENST00000371953	NM_000314.4	214	caG/ca																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589283	67589283	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0020969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	92	596	0	ENST00000274335.5:c.1271T>G	p.Leu424Ter	p.L424*	ENST00000274335		424	tTa/tGa																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67070640	67070643	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0020964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	100	366	0	ENST00000412916.2:c.267_270delAAGA	p.Arg90LysfsTer7	p.R90Kfs*7	ENST00000412916		88	ttAGAA/tt																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115707	8115719	+	frameshift_variant	Frame_Shift_Del	DEL	CAGACCCCTGACT	CAGACCCCTGACT	TCTAAACA			P-0020964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	61	579	4	ENST00000346208.3:c.1053_1065delinsTCTAAACA	p.Arg352LeufsTer17	p.R352Lfs*17	ENST00000346208		351	aaCAGACCCCTGACT/aaTCTAAACA																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112390	115112390	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	220	829	0	ENST00000257566.3:c.1350del	p.Ala451ArgfsTer181	p.A451Rfs*181	ENST00000257566	NM_016569.3	450	ggC/gg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	105	690	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0020973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	70	729	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	245	981	1	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0020973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	64	527	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49721622	49721622	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs200268600		P-0020973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	12	60	0	ENST00000449682.2:c.2017G>A	p.Gly673Ser	p.G673S	ENST00000449682	NM_020998.3	673	Ggt/Agt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107028	27107043	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCTCCTCCACATG	CAGCCTCCTCCACATG	-			P-0020973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	157	751	1	ENST00000324856.7:c.6642_6657del	p.Ser2214ArgfsTer12	p.S2214Rfs*12	ENST00000324856	NM_006015.4	2213	gcCAGCCTCCTCCACATG/gc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108202234	108202234	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	89	939	0	ENST00000278616.4:c.7579A>G	p.Met2527Val	p.M2527V	ENST00000278616	NM_000051.3	2527	Atg/Gtg																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	111995819	111995820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	71	620	0	ENST00000368678.4:c.1278dup	p.Ile427HisfsTer19	p.I427Hfs*19	ENST00000368678		426	-/C																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	86	657	1				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	139	1049	3	ENST00000269305.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000269305	NM_001126112.2	337	cGc/cAc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2226992	2226992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	144	908	1	ENST00000398665.3:c.4472C>T	p.Ser1491Phe	p.S1491F	ENST00000398665	NM_032482.2	1491	tCc/tTc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55561681	55561681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020974-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	71	390	0	ENST00000288135.5:c.71C>G	p.Ser24Cys	p.S24C	ENST00000288135	NM_000222.2	24	tCt/tGt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	33	759	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0020939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			118	533	792	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33289247	33289247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			76	446	547	1	ENST00000374542.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000374542	NM_001141970.1	102	tCg/tTg																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435542	18435542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	132	319	0	ENST00000266497.5:c.527C>T	p.Pro176Leu	p.P176L	ENST00000266497		176	cCt/cTt																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116422139	116422139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020939-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	461	580	0	ENST00000397752.3:c.3620C>T	p.Ala1207Val	p.A1207V	ENST00000397752	NM_000245.2	1207	gCa/gTa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117641113	117641113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	160	817	0	ENST00000368508.3:c.5858G>T	p.Ser1953Ile	p.S1953I	ENST00000368508	NM_002944.2	1953	aGt/aTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	264	1158	3	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	98	887	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	174	993	2	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41566460	41566460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	216	782	0	ENST00000263253.7:c.4337A>G	p.Tyr1446Cys	p.Y1446C	ENST00000263253	NM_001429.3	1446	tAt/tGt																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	152007128	152007128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020941-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	121	917	0	ENST00000262189.6:c.772T>C	p.Trp258Arg	p.W258R	ENST00000262189	NM_170606.2	258	Tgg/Cgg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	376	895	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40735506	40735506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020910-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	186	754	0	ENST00000373198.4:c.3367G>C	p.Ala1123Pro	p.A1123P	ENST00000373198	NM_133170.3	1123	Gcc/Ccc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49027128	49027128	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0020907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	94	530	0	ENST00000267163.4:c.1696del		p.X566_splice	ENST00000267163	NM_000321.2	566																																													NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3900918	3900918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	444	906	2	ENST00000262367.5:c.178G>A	p.Val60Ile	p.V60I	ENST00000262367	NM_004380.2	60	Gtt/Att																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187510276	187510276	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	188	672	0	ENST00000441802.2:c.13237T>G	p.Tyr4413Asp	p.Y4413D	ENST00000441802	NM_005245.3	4413	Tac/Gac																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139410114	139410114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	238	905	0	ENST00000277541.6:c.1724G>A	p.Cys575Tyr	p.C575Y	ENST00000277541	NM_017617.3	575	tGc/tAc																																												NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0020914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	1189	850	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0020914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	175	478	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153244232	153244232	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	346	674	0	ENST00000281708.4:c.1925A>G	p.Asp642Gly	p.D642G	ENST00000281708	NM_033632.3	642	gAt/gGt																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176631129	176631129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	71	782	1	ENST00000439151.2:c.1072C>T	p.Arg358Trp	p.R358W	ENST00000439151	NM_022455.4	358	Cgg/Tgg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023256	27023265	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGCGGCGG	CCGGCGGCGG	-			P-0020914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	157	542	0	ENST00000324856.7:c.363_372del	p.Gly122ValfsTer107	p.G122Vfs*107	ENST00000324856	NM_006015.4	121	cCCGGCGGCGGc/cc																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118374210	118374210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	284	632	0	ENST00000534358.1:c.7603G>C	p.Glu2535Gln	p.E2535Q	ENST00000534358	NM_005933.3	2535	Gag/Cag																																												NEWRECORD																																		
HIST1H3I	0	MSKCC	GRCh37	6	27839819	27839819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	436	898	1	ENST00000328488.2:c.275C>T	p.Ala92Val	p.A92V	ENST00000328488	NM_003533.2	92	gCg/gTg																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151891638	151891644	+	frameshift_variant	Frame_Shift_Del	DEL	GTGACAG	GTGACAG	-			P-0020914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	150	556	0	ENST00000262189.6:c.4388_4394del	p.Pro1463LeufsTer19	p.P1463Lfs*19	ENST00000262189	NM_170606.2	1463	cCTGTCACt/ct																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	69050718	69050718	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	250	798	1	ENST00000288368.4:c.4053C>A	p.Tyr1351Ter	p.Y1351*	ENST00000288368	NM_024870.2	1351	taC/taA																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44918642	44918642	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	386	997	0	ENST00000377967.4:c.1125C>A	p.Tyr375Ter	p.Y375*	ENST00000377967	NM_021140.2	375	taC/taA																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	55	848	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	76	1119	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221975	1221975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	67	1127	0	ENST00000326873.7:c.890G>A	p.Arg297Lys	p.R297K	ENST00000326873	NM_000455.4	297	aGg/aAg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46287468	46287469	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	30	599	0	ENST00000334344.6:c.5333dup	p.Asn1778LysfsTer4	p.N1778Kfs*4	ENST00000334344	NM_152641.2	1776	tta/ttAa																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134364	41134364	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	53	623	0	ENST00000379561.5:c.1264C>T	p.Gln422Ter	p.Q422*	ENST00000379561	NM_002015.3	422	Caa/Taa																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36986783	36986784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	25	356	0	ENST00000354822.5:c.905dup	p.Ala304CysfsTer135	p.A304Cfs*135	ENST00000354822	NM_001079668.2	302	gcg/gcCg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1295077	1295098	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCTCGGCAGCGGGGAGCGCG	CGGCTCGGCAGCGGGGAGCGCG	-			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	21	217	0	ENST00000310581.5:c.7_28del	p.Arg3CysfsTer68	p.R3Cfs*68	ENST00000310581	NM_198253.2	3	CGCGCTCCCCGCTGCCGAGCCGtg/tg																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140477806	140477806	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020944-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	40	782	0	ENST00000288602.6:c.1502A>T	p.Glu501Val	p.E501V	ENST00000288602	NM_004333.4	501	gAa/gTa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	36	852	2	ENST00000268489.5:c.2287dupG	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115109918	115109918	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	265	1227	1	ENST00000257566.3:c.1960del	p.Ser654ValfsTer235	p.S654Vfs*235	ENST00000257566	NM_016569.3	654	Agt/gt																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115110076	115110082	+	frameshift_variant	Frame_Shift_Del	DEL	AACAGGC	AACAGGC	-			P-0020912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			911	338	1526	0	ENST00000257566.3:c.1796_1802del	p.Ser599ThrfsTer31	p.S599Tfs*31	ENST00000257566	NM_016569.3	599	aGCCTGTTc/ac																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68847298	68847299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	223	1018	1	ENST00000261769.5:c.1221dup	p.Ala408SerfsTer11	p.A408Sfs*11	ENST00000261769	NM_004360.3	407	cca/ccAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177827	112177827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020912-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	36	555	0	ENST00000257430.4:c.6536A>G	p.Lys2179Arg	p.K2179R	ENST00000257430	NM_000038.5	2179	aAa/aGa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	9	435	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	28	869	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020947-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	35	883	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1204	109	744	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	105	698	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206652386	206652386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	86	738	0	ENST00000367120.3:c.1093G>A	p.Val365Ile	p.V365I	ENST00000367120	NM_014002.3	365	Gtc/Atc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458261	120458262	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	151	710	0	ENST00000256646.2:c.7083_7084delinsAT	p.Asp2362Tyr	p.D2362Y	ENST00000256646	NM_024408.3	2361	caGGac/caATac																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108150217	108150217	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	49	580	0	ENST00000278616.4:c.3285-1G>T		p.X1095_splice	ENST00000278616	NM_000051.3	1095																																													NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435850	110435850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	129	534	0	ENST00000375856.3:c.2551G>T	p.Ala851Ser	p.A851S	ENST00000375856	NM_003749.2	851	Gcc/Tcc																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81606168	81606168	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	148	629	0	ENST00000298171.2:c.838C>G	p.Pro280Ala	p.P280A	ENST00000298171	NM_000369.2	280	Cca/Gca																																												NEWRECORD																																		
TP53BP1	0	MSKCC	GRCh37	15	43712518	43712518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1233	123	814	1	ENST00000382044.4:c.4666G>A	p.Glu1556Lys	p.E1556K	ENST00000382044	NM_001141980.1	1556	Gag/Aag																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88420311	88420311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	86	561	2	ENST00000360948.2:c.2375C>T	p.Pro792Leu	p.P792L	ENST00000360948	NM_001012338.2	792	cCc/cTc																																												NEWRECORD																																		
CYLD	0	MSKCC	GRCh37	16	50828213	50828213	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			871	112	645	1	ENST00000398568.2:c.2551A>T	p.Ile851Phe	p.I851F	ENST00000398568	NM_001042412.1	851	Atc/Ttc																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9543537	9543537	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	101	611	0	ENST00000353224.5:c.1616+1G>T		p.X539_splice	ENST00000353224	NM_177990.2	539																																													NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153253748	153253748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0020861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	46	461	0	ENST00000281708.4:c.985G>T	p.Gly329Trp	p.G329W	ENST00000281708	NM_033632.3	329	Ggg/Tgg																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	43	491	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0020756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	77	861	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	77	1062	2	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30732957	30732957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	59	587	0	ENST00000359013.4:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000359013	NM_001024847.2	549	Gac/Aac																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	166	890	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
SLX4	0	MSKCC	GRCh37	16	3640328	3640328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1394	226	1100	0	ENST00000294008.3:c.3311G>A	p.Arg1104Gln	p.R1104Q	ENST00000294008	NM_032444.2	1104	cGg/cAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577541	7577541	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	229	864	0	ENST00000269305.4:c.740del	p.Asn247ThrfsTer98	p.N247Tfs*98	ENST00000269305	NM_001126112.2	247	aAc/ac																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	132	988	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	138	1145	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48934201	48934201	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	90	1008	0	ENST00000267163.4:c.656del	p.Met219SerfsTer45	p.M219Sfs*45	ENST00000267163	NM_000321.2	219	aTg/ag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44910994	44910994	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	109	905	0	ENST00000377967.4:c.695T>A	p.Leu232Ter	p.L232*	ENST00000377967	NM_021140.2	232	tTg/tAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	345	902	1	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48916776	48916776	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020833-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	170	784	0	ENST00000267163.4:c.306T>A	p.Cys102Ter	p.C102*	ENST00000267163	NM_000321.2	102	tgT/tgA																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	116	891	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	153	981	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64136019	64136019	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199674030		P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	181	1148	2	ENST00000334205.4:c.1280G>A	p.Arg427His	p.R427H	ENST00000334205	NM_003942.2	427	cGc/cAc																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77047163	77047163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	74	937	0	ENST00000356341.3:c.1381G>A	p.Glu461Lys	p.E461K	ENST00000356341	NM_002576.4	461	Gag/Aag																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89350447	89350447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1464	108	1452	2	ENST00000301030.4:c.2503G>A	p.Asp835Asn	p.D835N	ENST00000301030	NM_001256183.1	835	Gac/Aac																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40944362	40944362	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	120	668	0	ENST00000373198.4:c.2139+1G>A		p.X713_splice	ENST00000373198	NM_133170.3	713																																													NEWRECORD																																		
HIST1H3C	0	MSKCC	GRCh37	6	26045870	26045870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020793-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	75	750	0	ENST00000540144.1:c.232G>C	p.Asp78His	p.D78H	ENST00000540144	NM_003531.2	78	Gac/Cac																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061459	38061459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006212-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			526	44	971	1	ENST00000250448.2:c.530C>T	p.Ser177Leu	p.S177L	ENST00000250448	NM_004496.3	177	tCg/tTg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020870-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	23	773	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	163	396	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38962603	38962603	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020884-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	332	673	0	ENST00000357387.3:c.1652T>A	p.Ile551Lys	p.I551K	ENST00000357387	NM_152756.3	551	aTa/aAa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	240	814	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	153	896	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	115	763	0	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145739374	145739374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	190	971	2	ENST00000428558.2:c.1996G>A	p.Gly666Arg	p.G666R	ENST00000428558	NM_004260.3	666	Ggg/Agg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44922694	44922694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	51	502	1	ENST00000377967.4:c.1555C>T	p.Arg519Ter	p.R519*	ENST00000377967	NM_021140.2	519	Cga/Tga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108196791	108196791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	73	444	0	ENST00000278616.4:c.6814G>A	p.Glu2272Lys	p.E2272K	ENST00000278616	NM_000051.3	2272	Gaa/Aaa																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64128622	64128622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	172	778	0	ENST00000334205.4:c.479G>A	p.Arg160Gln	p.R160Q	ENST00000334205	NM_003942.2	160	cGa/cAa																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64136264	64136264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	177	764	4	ENST00000334205.4:c.1423G>A	p.Asp475Asn	p.D475N	ENST00000334205	NM_003942.2	475	Gac/Aac																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	431680	431680	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	137	900	0	ENST00000399788.2:c.2329G>C	p.Glu777Gln	p.E777Q	ENST00000399788	NM_001042603.1	777	Gag/Cag																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49427508	49427514	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGGG	CCCAGGG	-			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	153	776	0	ENST00000301067.7:c.10974_10980del	p.Pro3659ValfsTer88	p.P3659Vfs*88	ENST00000301067	NM_003482.3	3658	acCCCTGGG/ac																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49446774	49446775	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	189	736	0	ENST00000301067.7:c.1035_1036delCT	p.Cys346SerfsTer17	p.C346Sfs*17	ENST00000301067	NM_003482.3	345	ctCTgt/ctgt																																												NEWRECORD																																		
PRKD1	0	MSKCC	GRCh37	14	30046488	30046488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	18	794	1	ENST00000331968.5:c.2695G>A	p.Glu899Lys	p.E899K	ENST00000331968	NM_002742.2	899	Gaa/Aaa																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95570180	95570180	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150514959		P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	32	460	0	ENST00000343455.3:c.3553G>A	p.Ala1185Thr	p.A1185T	ENST00000343455	NM_177438.2	1185	Gcc/Acc																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740591	58740591	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	102	753	0	ENST00000305921.3:c.1496T>C	p.Val499Ala	p.V499A	ENST00000305921	NM_003620.3	499	gTg/gCg																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288229	33288229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	305	786	0	ENST00000374542.5:c.1179G>C	p.Lys393Asn	p.K393N	ENST00000374542	NM_001141970.1	393	aaG/aaC																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151878769	151878769	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	50	568	0	ENST00000262189.6:c.6176C>G	p.Ser2059Ter	p.S2059*	ENST00000262189	NM_170606.2	2059	tCa/tGa																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151878787	151878787	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	64	617	0	ENST00000262189.6:c.6158C>G	p.Ser2053Cys	p.S2053C	ENST00000262189	NM_170606.2	2053	tCt/tGt																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151878839	151878839	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	93	731	0	ENST00000262189.6:c.6106C>G	p.Leu2036Val	p.L2036V	ENST00000262189	NM_170606.2	2036	Ctt/Gtt																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135785992	135785992	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020781-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	96	906	0	ENST00000298552.3:c.1229C>G	p.Ser410Ter	p.S410*	ENST00000298552	NM_001162426.1	410	tCa/tGa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	257	703	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36228980	36228980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			894	330	696	0	ENST00000222270.7:c.7760G>A	p.Arg2587Gln	p.R2587Q	ENST00000222270	NM_014727.1	2587	cGa/cAa																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110436695	110436695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	330	814	3	ENST00000375856.3:c.1706G>A	p.Arg569Gln	p.R569Q	ENST00000375856	NM_003749.2	569	cGa/cAa																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162731228	162731228	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	137	352	0	ENST00000367921.3:c.1083G>C	p.Glu361Asp	p.E361D	ENST00000367921	NM_006182.2	361	gaG/gaC																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193121509	193121509	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	95	349	0	ENST00000367435.3:c.908-1G>C		p.X303_splice	ENST00000367435	NM_024529.4	303																																													NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73349468	73349468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	183	672	1	ENST00000377767.4:c.868G>T	p.Asp290Tyr	p.D290Y	ENST00000377767	NM_014953.3	290	Gat/Tat																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42798872	42798872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	371	701	0	ENST00000575354.2:c.4444G>A	p.Gly1482Ser	p.G1482S	ENST00000575354	NM_015125.3	1482	Ggc/Agc																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29912299	29912299	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1431	97	896	0	ENST00000376809.5:c.921del	p.Ile308SerfsTer14	p.I308Sfs*14	ENST00000376809	NM_002116.7	306	atC/at																																												NEWRECORD																																		
PRDM14	0	MSKCC	GRCh37	8	70981855	70981855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020874-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	566	792	0	ENST00000276594.2:c.241G>A	p.Gly81Ser	p.G81S	ENST00000276594	NM_024504.3	81	Ggt/Agt																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0020620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	14	384	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			28	84	340	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9928076	9928076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	77	489	1	ENST00000330684.3:c.1663G>A	p.Ala555Thr	p.A555T	ENST00000330684	NM_001134407.1	555	Gcc/Acc																																												NEWRECORD																																		
EED	0	MSKCC	GRCh37	11	85989481	85989481	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	119	731	0	ENST00000263360.6:c.1240C>G	p.Arg414Gly	p.R414G	ENST00000263360	NM_003797.3	414	Cga/Gga																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26029190	26029190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020792-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	71	646	2	ENST00000435504.4:c.160G>A	p.Ala54Thr	p.A54T	ENST00000435504		54	Gca/Aca																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	56	689	1	ENST00000324856.7:c.1650dupC	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	177	450	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29443625	29443625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020746-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	87	724	0	ENST00000389048.3:c.3592C>T	p.Leu1198Phe	p.L1198F	ENST00000389048	NM_004304.4	1198	Ctc/Ttc																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1293558	1293558	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020780-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	98	951	0	ENST00000310581.5:c.1443del	p.Arg481SerfsTer28	p.R481Sfs*28	ENST00000310581	NM_198253.2	481	agG/ag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	60	613	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120471712	120471712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75423398		P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	46	487	0	ENST00000256646.2:c.3779G>A	p.Arg1260His	p.R1260H	ENST00000256646	NM_024408.3	1260	cGt/cAt																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458813	120458813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	61	627	0	ENST00000256646.2:c.6532G>T	p.Ala2178Ser	p.A2178S	ENST00000256646	NM_024408.3	2178	Gcc/Tcc																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18499723	18499723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	60	476	0	ENST00000266497.5:c.1578C>A	p.Ser526Arg	p.S526R	ENST00000266497		526	agC/agA																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49426411	49426411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	97	1010	0	ENST00000301067.7:c.12077A>G	p.Gln4026Arg	p.Q4026R	ENST00000301067	NM_003482.3	4026	cAa/cGa																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49445379	49445379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	104	974	1	ENST00000301067.7:c.2087C>T	p.Ser696Phe	p.S696F	ENST00000301067	NM_003482.3	696	tCc/tTc																																												NEWRECORD																																		
EPCAM	0	MSKCC	GRCh37	2	47602389	47602389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	55	450	0	ENST00000263735.4:c.442C>G	p.Leu148Val	p.L148V	ENST00000263735	NM_002354.2	148	Cta/Gta																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187629316	187629316	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	86	695	0	ENST00000441802.2:c.1666A>G	p.Thr556Ala	p.T556A	ENST00000441802	NM_005245.3	556	Aca/Gca																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1260708	1260708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	62	530	1	ENST00000310581.5:c.2851C>T	p.Arg951Trp	p.R951W	ENST00000310581	NM_198253.2	951	Cgg/Tgg																																												NEWRECORD																																		
HIST1H2BD	0	MSKCC	GRCh37	6	26158743	26158743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	116	616	0	ENST00000289316.2:c.346A>G	p.Thr116Ala	p.T116A	ENST00000289316	NM_138720.2	116	Acc/Gcc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8317891	8317891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	55	467	0	ENST00000356435.5:c.5722G>T	p.Asp1908Tyr	p.D1908Y	ENST00000356435		1908	Gac/Tac																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039350	47039369	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCTGTCCTCCTCCAACGT	GTGCTGTCCTCCTCCAACGT	-			P-0020779-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	52	379	0	ENST00000329236.7:c.743_762del	p.Val248AlafsTer48	p.V248Afs*48	ENST00000329236	NM_001204466.1	248	GTGCTGTCCTCCTCCAACGTg/g																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	90	1066	5	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	22	437	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	105	853	1	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105239218	105239218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	27	859	0	ENST00000349310.3:c.1169A>G	p.Gln390Arg	p.Q390R	ENST00000349310	NM_001014432.1	390	cAg/cGg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44894199	44894200	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTA			P-0020839-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	38	944	0	ENST00000377967.4:c.589_592dup	p.Asn198MetfsTer2	p.N198Mfs*2	ENST00000377967	NM_021140.2	196	-/TGTA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	459	813	1	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48951053	48951053	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	115	294	0	ENST00000267163.4:c.1216-1G>C		p.X406_splice	ENST00000267163	NM_000321.2	406																																													NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65325798	65325798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	146	542	0	ENST00000342505.4:c.1324G>T	p.Gly442Cys	p.G442C	ENST00000342505	NM_002227.2	442	Ggt/Tgt																																												NEWRECORD																																		
ELF3	0	MSKCC	GRCh37	1	201981086	201981086	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	261	567	0	ENST00000359651.3:c.165G>C	p.Glu55Asp	p.E55D	ENST00000359651		55	gaG/gaC																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115118760	115118760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	293	780	0	ENST00000257566.3:c.581G>T	p.Gly194Val	p.G194V	ENST00000257566	NM_016569.3	194	gGg/gTg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112164656	112164656	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	80	351	0	ENST00000257430.4:c.1730T>A	p.Leu577Ter	p.L577*	ENST00000257430	NM_000038.5	577	tTa/tAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175097	112175097	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020876-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	44	324	0	ENST00000257430.4:c.3806T>G	p.Ile1269Arg	p.I1269R	ENST00000257430	NM_000038.5	1269	aTa/aGa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	120	640	3	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	218	956	5	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	161	415	3	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243800978	243800978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	199	978	5	ENST00000263826.5:c.496C>T	p.Arg166Ter	p.R166*	ENST00000263826	NM_005465.4	166	Cga/Tga																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2154748	2154748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	193	877	6	ENST00000434045.2:c.473C>T	p.Pro158Leu	p.P158L	ENST00000434045	NM_001127598.1	158	cCg/cTg																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508176	106508176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	188	342	3	ENST00000359195.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000359195	NM_002649.2	57	gCg/gTg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32188244	32188244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020739-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	207	1155	7	ENST00000375023.3:c.1097C>T	p.Pro366Leu	p.P366L	ENST00000375023	NM_004557.3	366	cCg/cTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	403	961	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41223115	41223115	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	217	818	1	ENST00000357654.3:c.4816A>T	p.Lys1606Ter	p.K1606*	ENST00000357654	NM_007294.3	1606	Aaa/Taa																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186504357	186504357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	83	489	0	ENST00000323963.5:c.694C>G	p.Pro232Ala	p.P232A	ENST00000323963		232	Cca/Gca																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117725519	117725519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020831-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	141	719	0	ENST00000368508.3:c.362C>T	p.Ser121Phe	p.S121F	ENST00000368508	NM_002944.2	121	tCt/tTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	46	992	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	280	979	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	74	459	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1131	47	957	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	109	421	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	215	702	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	104	503	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	31	812	0	ENST00000269305.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000269305	NM_001126112.2	236	Tac/Cac																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	237	953	0	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150005515	150005515	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	122	570	1	ENST00000253339.5:c.710del	p.Pro237HisfsTer6	p.P237Hfs*6	ENST00000253339		237	cCa/ca																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55370957	55370957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	267	916	0	ENST00000297316.4:c.259G>A	p.Ala87Thr	p.A87T	ENST00000297316	NM_022454.3	87	Gcg/Acg																																												NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48881488	48881489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	108	497	2	ENST00000267163.4:c.219_220dup	p.Ala74GlufsTer4	p.A74Efs*4	ENST00000267163	NM_000321.2	70	-/AG																																												NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	169	856	0	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11168272	11168272	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	60	829	0	ENST00000361445.4:c.7600T>C	p.Ser2534Pro	p.S2534P	ENST00000361445	NM_004958.3	2534	Tcc/Ccc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023089	27023090	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	36	112	0	ENST00000324856.7:c.197dup	p.Gln67AlafsTer44	p.Q67Afs*44	ENST00000324856	NM_006015.4	65	-/C																																												NEWRECORD																																		
INPPL1	0	MSKCC	GRCh37	11	71936189	71936189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	141	546	0	ENST00000298229.2:c.161G>T	p.Gly54Val	p.G54V	ENST00000298229	NM_001567.3	54	gGg/gTg																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118343381	118343381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	106	465	3	ENST00000534358.1:c.1507C>T	p.Arg503Trp	p.R503W	ENST00000534358	NM_005933.3	503	Cgg/Tgg																																												NEWRECORD																																		
RAB35	0	MSKCC	GRCh37	12	120541646	120541646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	90	774	1	ENST00000229340.5:c.211C>T	p.Arg71Cys	p.R71C	ENST00000229340	NM_006861.6	71	Cgc/Tgc																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7128915	7128915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	125	772	1	ENST00000302850.5:c.2893G>A	p.Val965Ile	p.V965I	ENST00000302850	NM_000208.2	965	Gtc/Atc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15375428	15375430	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	182	926	0	ENST00000263377.2:c.997_999del	p.Lys333del	p.K333del	ENST00000263377	NM_058243.2	333	AAG/-																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41574619	41574620	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	86	1115	2	ENST00000263253.7:c.6910_6911delTC	p.Ser2304GlnfsTer74	p.S2304Qfs*74	ENST00000263253	NM_001429.3	2302	TCt/t																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591141	67591142	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATTG			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	55	472	0	ENST00000274335.5:c.1734_1735insATTG	p.Gln579IlefsTer24	p.Q579Ifs*24	ENST00000274335		578	-/ATTG																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288207	33288207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	70	717	0	ENST00000374542.5:c.1201A>T	p.Thr401Ser	p.T401S	ENST00000374542	NM_001141970.1	401	Acc/Tcc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8492901	8492901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020754-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	99	777	0	ENST00000356435.5:c.2428G>A	p.Ala810Thr	p.A810T	ENST00000356435		810	Gct/Act																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020773-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1204	25	751	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	369	1086	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2958127	2958127	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	80	1207	0	ENST00000396946.4:c.2605C>T	p.Arg869Trp	p.R869W	ENST00000396946	NM_032415.4	869	Cgg/Tgg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156834565	156834565	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	134	1327	0	ENST00000524377.1:c.333C>A	p.Phe111Leu	p.F111L	ENST00000524377	NM_002529.3	111	ttC/ttA																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48955439	48955602	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATGTGCTTAATTTAAAAGCCTTTGATTTTTACAAAGTGATCGAAAGTTTTATCAAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACATCGAATCATGGAATCCCTTGCATGGCTCTCAGTAAGTAGCTAAATAATTGAAGA	AATGTGCTTAATTTAAAAGCCTTTGATTTTTACAAAGTGATCGAAAGTTTTATCAAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACATCGAATCATGGAATCCCTTGCATGGCTCTCAGTAAGTAGCTAAATAATTGAAGA	-			P-0020696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	42	634	1	ENST00000267163.4:c.1558_1695+26del		p.X520_splice	ENST00000267163	NM_000321.2	520																																													NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98231085	98231085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020696-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	68	762	0	ENST00000331920.6:c.2198C>T	p.Ser733Leu	p.S733L	ENST00000331920	NM_000264.3	733	tCa/tTa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	199	988	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0020863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	196	882	3	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67473756	67473756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	69	944	1	ENST00000327367.4:c.836G>A	p.Arg279Lys	p.R279K	ENST00000327367	NM_005902.3	279	aGg/aAg																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36935384	36935384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	223	993	1	ENST00000361632.4:c.1343G>A	p.Gly448Asp	p.G448D	ENST00000361632		448	gGc/gAc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48581290	48581296	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTCTG	AGCTCTG	-			P-0020863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	418	901	0	ENST00000342988.3:c.594_600del	p.Ala199Ter	p.A199*	ENST00000342988	NM_005359.5	198	ccAGCTCTG/cc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164887	36164888	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGCT			P-0020863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	258	1052	0	ENST00000300305.3:c.984_987dup	p.Phe330SerfsTer271	p.F330Sfs*271	ENST00000300305		329	-/AGCG																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	504	902	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578412	7578413	+	missense_variant	Missense_Mutation	DNP	AC	AC	TG			P-0020829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	361	899	2	ENST00000269305.4:c.517_518delinsCA	p.Val173Gln	p.V173Q	ENST00000269305	NM_001126112.2	173	GTg/CAg																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106196819	106196819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	170	626	0	ENST00000380013.4:c.5152G>A	p.Val1718Ile	p.V1718I	ENST00000380013	NM_001127208.2	1718	Gta/Ata																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117684019	117684019	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			72	186	529	0	ENST00000368508.3:c.3128C>A	p.Ala1043Glu	p.A1043E	ENST00000368508	NM_002944.2	1043	gCa/gAa																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49940025	49940025	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201546006		P-0020848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	29	1098	2	ENST00000296474.3:c.1018G>A	p.Ala340Thr	p.A340T	ENST00000296474	NM_002447.2	340	Gcc/Acc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52440365	52440365	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	32	946	0	ENST00000460680.1:c.687C>G	p.Asn229Lys	p.N229K	ENST00000460680	NM_004656.3	229	aaC/aaG																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21994234	21994234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	27	959	1	ENST00000361570.3:c.220G>T	p.Glu74Ter	p.E74*	ENST00000361570	NM_058195.3	74	Gag/Tag																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21994234	21994234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	27	959	1	ENST00000361570.3:c.220G>T	p.Glu74Ter	p.E74*	ENST00000361570	NM_058195.3	74	Gag/Tag																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108164163	108164164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			48	236	454	1	ENST00000278616.4:c.4741dupA	p.Ile1581AsnfsTer5	p.I1581Nfs*5	ENST00000278616	NM_000051.3	1579	caa/cAaa																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145742852	145742853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020882-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	927	521	0	ENST00000428558.2:c.158dup	p.Gln54ProfsTer83	p.Q54Pfs*83	ENST00000428558	NM_004260.3	53	ggc/ggGc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	204	994	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	195	963	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	335	949	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	318	712	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45368317	45368317	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	147	618	4	ENST00000262160.6:c.1285C>T	p.Gln429Ter	p.Q429*	ENST00000262160	NM_005901.5	429	Cag/Tag																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	78	596	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67473719	67473719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020791-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			255	603	958	1	ENST00000327367.4:c.799G>T	p.Glu267Ter	p.E267*	ENST00000327367	NM_005902.3	267	Gag/Tag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173345	112173345	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	90	616	0	ENST00000257430.4:c.2054G>A	p.Trp685Ter	p.W685*	ENST00000257430	NM_000038.5	685	tGg/tAg																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	342	789	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	102	428	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0020838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	691	1517	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142217614	142217614	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0020838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	94	852	0	ENST00000350721.4:c.5383G>T	p.Gly1795Ter	p.G1795*	ENST00000350721	NM_001184.3	1795	Gga/Tga																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189585691	189585691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020838-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	280	1004	0	ENST00000264731.3:c.952C>T	p.Arg318Cys	p.R318C	ENST00000264731	NM_003722.4	318	Cgc/Tgc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	121	1022	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0020867-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	971	1047	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	58	500	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55144564	55144564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	49	376	1	ENST00000257290.5:c.2038G>A	p.Gly680Arg	p.G680R	ENST00000257290	NM_006206.4	680	Gga/Aga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105820	27105820	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	52	387	1	ENST00000324856.7:c.5431A>T	p.Lys1811Ter	p.K1811*	ENST00000324856	NM_006015.4	1811	Aag/Tag																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193205420	193205420	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	64	382	0	ENST00000367435.3:c.1351G>C	p.Ala451Pro	p.A451P	ENST00000367435	NM_024529.4	451	Gca/Cca																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57864847	57864847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	40	540	2	ENST00000228682.2:c.2324C>T	p.Pro775Leu	p.P775L	ENST00000228682	NM_005269.2	775	cCc/cTc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3832775	3832775	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	48	401	0	ENST00000262367.5:c.1483C>T	p.Gln495Ter	p.Q495*	ENST00000262367	NM_004380.2	495	Cag/Tag																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220623	1220624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	58	589	0	ENST00000326873.7:c.644dup	p.Ser216LeufsTer50	p.S216Lfs*50	ENST00000326873	NM_000455.4	214	cag/caGg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602864	10602864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	89	686	0	ENST00000171111.5:c.714C>G	p.Asn238Lys	p.N238K	ENST00000171111	NM_203500.1	238	aaC/aaG																																												NEWRECORD																																		
CXCR4	0	MSKCC	GRCh37	2	136872901	136872901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	54	282	0	ENST00000241393.3:c.597C>G	p.Phe199Leu	p.F199L	ENST00000241393	NM_003467.2	199	ttC/ttG																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142215882	142215882	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	58	302	0	ENST00000350721.4:c.5711G>C	p.Arg1904Pro	p.R1904P	ENST00000350721	NM_001184.3	1904	cGg/cCg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187527319	187527319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	71	388	0	ENST00000441802.2:c.10255C>G	p.Pro3419Ala	p.P3419A	ENST00000441802	NM_005245.3	3419	Ccc/Gcc																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13978840	13978840	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	36	420	0	ENST00000405192.2:c.267G>C	p.Lys89Asn	p.K89N	ENST00000405192	NM_001163147.1	89	aaG/aaC																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039709	47039709	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0020776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	57	548	0	ENST00000329236.7:c.926+1G>T		p.X309_splice	ENST00000329236	NM_001204466.1	309																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			698	169	1156	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27097692	27097694	+	inframe_deletion	In_Frame_Del	DEL	AGC	AGC	-			P-0007298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	283	1085	0	ENST00000324856.7:c.3283_3285del	p.Gln1095del	p.Q1095del	ENST00000324856	NM_006015.4	1094	aAGCag/aag																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72863677	72863677	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			847	169	1217	2	ENST00000268489.5:c.3529+1G>A		p.X1177_splice	ENST00000268489	NM_006885.3	1177																																													NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157502313	157502313	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			482	87	585	3	ENST00000346085.5:c.3345+1G>T		p.X1115_splice	ENST00000346085	NM_020732.3	1115																																													NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	161771154	161771154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			831	125	1142	0	ENST00000366898.1:c.1375G>A	p.Gly459Arg	p.G459R	ENST00000366898	NM_004562.2	459	Ggg/Agg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8524997	8524997	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007298-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			547	88	721	0	ENST00000356435.5:c.607G>T	p.Gly203Ter	p.G203*	ENST00000356435		203	Gga/Tga																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0020750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	190	865	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180053194	180053194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020750-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	175	860	3	ENST00000261937.6:c.1175C>A	p.Ala392Asp	p.A392D	ENST00000261937	NM_182925.4	392	gCc/gAc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	249	789	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123247514	123247514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	22	794	0	ENST00000358487.5:c.1977G>C	p.Lys659Asn	p.K659N	ENST00000358487	NM_000141.4	659	aaG/aaC																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70404893	70404893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	170	723	1	ENST00000373644.4:c.2407G>A	p.Ala803Thr	p.A803T	ENST00000373644	NM_030625.2	803	Gct/Act																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	368	950	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410035	63410035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	174	724	0	ENST00000330258.3:c.3132G>A	p.Met1044Ile	p.M1044I	ENST00000330258	NM_152424.3	1044	atG/atA																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741604	17741604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	44	434	1	ENST00000250003.3:c.275G>A	p.Arg92His	p.R92H	ENST00000250003	NM_002478.4	92	cGc/cAc																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4409102	4409102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	179	575	0	ENST00000261254.3:c.797G>A	p.Arg266His	p.R266H	ENST00000261254	NM_001759.3	266	cGt/cAt																																												NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	350	777	25	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156841419	156841419	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	182	483	0	ENST00000524377.1:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000524377	NM_002529.3	241	tCt/tAt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717757	89717758	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	208	561	0	ENST00000371953.3:c.783_784del	p.Asn262GlnfsTer35	p.N262Qfs*35	ENST00000371953	NM_000314.4	261	cAG/c																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42021366	42021366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	182	528	0	ENST00000219905.7:c.3662G>A	p.Arg1221Gln	p.R1221Q	ENST00000219905	NM_001164273.1	1221	cGg/cAg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3786740	3786740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	302	832	0	ENST00000262367.5:c.4471C>G	p.Gln1491Glu	p.Q1491E	ENST00000262367	NM_004380.2	1491	Caa/Gaa																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50905513	50905513	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	306	928	0	ENST00000440232.2:c.641T>G	p.Val214Gly	p.V214G	ENST00000440232	NM_002691.3	214	gTg/gGg																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16085673	16085673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	300	842	0	ENST00000281043.3:c.849G>T	p.Glu283Asp	p.E283D	ENST00000281043	NM_005378.4	283	gaG/gaT																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37089091	37089091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	241	633	0	ENST00000231790.2:c.1813G>C	p.Glu605Gln	p.E605Q	ENST00000231790	NM_000249.3	605	Gaa/Caa																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37089136	37089136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	231	676	0	ENST00000231790.2:c.1858G>A	p.Glu620Lys	p.E620K	ENST00000231790	NM_000249.3	620	Gag/Aag																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37090410	37090410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	224	769	0	ENST00000231790.2:c.2005G>A	p.Glu669Lys	p.E669K	ENST00000231790	NM_000249.3	669	Gaa/Aaa																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1266601	1266601	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	197	765	0	ENST00000310581.5:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000310581	NM_198253.2	878	Acc/Gcc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55225358	55225358	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	306	731	0	ENST00000275493.2:c.1210T>C	p.Phe404Leu	p.F404L	ENST00000275493	NM_005228.3	404	Ttt/Ctt																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116411576	116411576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	169	497	1	ENST00000397752.3:c.2755G>A	p.Val919Ile	p.V919I	ENST00000397752	NM_000245.2	919	Gtc/Atc																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410237	63410237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	212	832	0	ENST00000330258.3:c.2930C>G	p.Pro977Arg	p.P977R	ENST00000330258	NM_152424.3	977	cCc/cGc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52623152	52623161	+	protein_altering_variant	In_Frame_Del	DEL	CCACATAGAC	CCACATAGAC	G			P-0020886-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			262	301	818	0	ENST00000394830.3:c.2890_2899delinsC	p.Val964_Glu967delinsGln	p.V964_E967delinsQ	ENST00000394830	NM_018313.4	964	GTCTATGTGGaa/Caa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	66	483	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12028619	12028619	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	87	508	0	ENST00000353533.5:c.822A>T	p.Arg274Ser	p.R274S	ENST00000353533	NM_003010.3	274	agA/agT																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16040728	16040728	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0020749-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	48	460	0	ENST00000268712.3:c.1408-2A>G		p.X470_splice	ENST00000268712	NM_006311.3	470																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	318	952	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32893408	32893408	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	149	704	0	ENST00000380152.3:c.262C>G	p.Leu88Val	p.L88V	ENST00000380152		88	Ctg/Gtg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579592	7579602	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGTAGATGGGT	TGTAGATGGGT	-			P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	141	832	1	ENST00000269305.4:c.97-12_97-2del		p.X33_splice	ENST00000269305	NM_001126112.2	33																																													NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29483000	29483000	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	167	511	0	ENST00000358273.4:c.61-1G>A		p.X21_splice	ENST00000358273	NM_001042492.2	21																																													NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220418	1220419	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCATTGTGCACAAGGACATCAAGCC			P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	158	1283	0	ENST00000326873.7:c.513_537dup	p.Gly180HisfsTer94	p.G180Hfs*94	ENST00000326873	NM_000455.4	171	ggc/gGCATTGTGCACAAGGACATCAAGCCgc																																												NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36211139	36211139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1329	217	1507	3	ENST00000222270.7:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000222270	NM_014727.1	297	cGa/cAa																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55564570	55564570	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	246	892	1	ENST00000288135.5:c.458G>T	p.Gly153Val	p.G153V	ENST00000288135	NM_000222.2	153	gGg/gTg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76912110	76912110	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020828-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	64	962	1	ENST00000373344.5:c.4154A>T	p.Gln1385Leu	p.Q1385L	ENST00000373344	NM_000489.3	1385	cAg/cTg																																												NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	38	704	0	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	59	550	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	76	701	5	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	111	968	7	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	62	917	3	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																												NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	72	1012	5	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	61	824	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	111	768	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177864	112177864	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			202	20	513	0	ENST00000257430.4:c.6579del	p.Val2194PhefsTer5	p.V2194Ffs*5	ENST00000257430	NM_000038.5	2191	ggA/gg																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149497299	149497299	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142762235		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	99	1080	4	ENST00000261799.4:c.3019G>A	p.Val1007Ile	p.V1007I	ENST00000261799	NM_002609.3	1007	Gtc/Atc																																												NEWRECORD																																		
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	74	1199	9	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																												NEWRECORD																																		
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	106	1393	3	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	90	1158	4	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																												NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36208923	36208925	+	start_lost,inframe_deletion	Translation_Start_Site	DEL	GGC	GGC	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	10	61	0	ENST00000222270.7:c.14_16del	p.Ala5del	p.A5del	ENST00000222270	NM_014727.1	1	atGGCg/atg																																												NEWRECORD																																		
HLA-B	0	MSKCC	GRCh37	6	31323362	31323363	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	76	923	2	ENST00000412585.2:c.626dupC	p.Thr211AspfsTer10	p.T211Dfs*10	ENST00000412585	NM_005514.6	209	cca/ccCa																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193205439	193205439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	66	786	0	ENST00000367435.3:c.1370G>T	p.Trp457Leu	p.W457L	ENST00000367435	NM_024529.4	457	tGg/tTg																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49418397	49418397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	111	938	0	ENST00000301067.7:c.16016C>A	p.Ala5339Asp	p.A5339D	ENST00000301067	NM_003482.3	5339	gCc/gAc																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49437711	49437713	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	91	1223	0	ENST00000301067.7:c.5257_5259del	p.Lys1753del	p.K1753del	ENST00000301067	NM_003482.3	1753	AAG/-																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112910844	112910844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	48	1058	0	ENST00000351677.2:c.853T>G	p.Phe285Val	p.F285V	ENST00000351677	NM_002834.3	285	Ttt/Gtt																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66729108	66729108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	58	1092	3	ENST00000307102.5:c.316G>A	p.Ala106Thr	p.A106T	ENST00000307102	NM_002755.3	106	Gca/Aca																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857386	9857386	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	27	712	0	ENST00000330684.3:c.4015A>G	p.Lys1339Glu	p.K1339E	ENST00000330684	NM_001134407.1	1339	Aaa/Gaa																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38508664	38508664	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	90	1253	0	ENST00000254066.5:c.712A>G	p.Lys238Glu	p.K238E	ENST00000254066	NM_000964.3	238	Aag/Gag																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696345	47696345	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	49	627	1	ENST00000347630.2:c.478G>A	p.Glu160Lys	p.E160K	ENST00000347630	NM_001007230.1	160	Gag/Aag																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59878611	59878612	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	22	500	0	ENST00000259008.2:c.1140+2_1140+3del		p.X380_splice	ENST00000259008	NM_032043.2	380																																													NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36212113	36212113	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	53	833	0	ENST00000222270.7:c.1868del	p.Pro623GlnfsTer37	p.P623Qfs*37	ENST00000222270	NM_014727.1	622	Ccc/cc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42794104	42794104	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	40	570	0	ENST00000575354.2:c.1464+1G>A		p.X488_splice	ENST00000575354	NM_015125.3	488																																													NEWRECORD																																		
PDCD1	0	MSKCC	GRCh37	2	242794123	242794123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	75	1161	1	ENST00000334409.5:c.605C>A	p.Ala202Asp	p.A202D	ENST00000334409	NM_005018.2	202	gCc/gAc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32169955	32169956	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	63	1178	0	ENST00000375023.3:c.3652dup	p.Ser1218PhefsTer17	p.S1218Ffs*17	ENST00000375023	NM_004557.3	1218	tct/tTct																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93967930	93967931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	25	891	0	ENST00000369303.4:c.1996dup	p.Thr666AsnfsTer17	p.T666Nfs*17	ENST00000369303	NM_004440.3	666	acc/aAcc																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151896493	151896493	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	30	756	0	ENST00000262189.6:c.4144A>G	p.Ser1382Gly	p.S1382G	ENST00000262189	NM_170606.2	1382	Agt/Ggt																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	69046453	69046453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	56	939	0	ENST00000288368.4:c.3926A>G	p.Asp1309Gly	p.D1309G	ENST00000288368	NM_024870.2	1309	gAc/gGc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145742149	145742149	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	69	745	0	ENST00000428558.2:c.355-1G>T		p.X119_splice	ENST00000428558	NM_004260.3	119																																													NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249911	110249911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	85	802	2	ENST00000374672.4:c.764C>A	p.Pro255His	p.P255H	ENST00000374672	NM_004235.4	255	cCt/cAt																																												NEWRECORD																																		
RXRA	0	MSKCC	GRCh37	9	137300130	137300130	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140464195		P-0020834-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	52	1035	0	ENST00000481739.1:c.415G>A	p.Gly139Arg	p.G139R	ENST00000481739	NM_002957.4	139	Ggg/Agg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0020866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	30	452	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	218	682	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																												NEWRECORD																																		
RRAS2	0	MSKCC	GRCh37	11	14380350	14380350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	113	394	0	ENST00000256196.4:c.67G>A	p.Gly23Ser	p.G23S	ENST00000256196		23	Ggc/Agc																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103506714	103506714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	98	347	1	ENST00000355739.4:c.457G>A	p.Glu153Lys	p.E153K	ENST00000355739	NM_000123.3	153	Gaa/Aaa																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	69009347	69009347	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs190776975		P-0020866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	254	685	0	ENST00000288368.4:c.2464G>A	p.Val822Met	p.V822M	ENST00000288368	NM_024870.2	822	Gtg/Atg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207204	1207204	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0020851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	313	1016	0	ENST00000326873.7:c.290+2del		p.X97_splice	ENST00000326873	NM_000455.4	97																																													NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15271883	15271883	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	267	1335	0	ENST00000263388.2:c.6556del	p.Leu2186CysfsTer60	p.L2186Cfs*60	ENST00000263388	NM_000435.2	2186	Ctg/tg																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637862	176637863	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0020851-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			129	229	951	0	ENST00000439151.2:c.2466_2467dup	p.Pro823LeufsTer15	p.P823Lfs*15	ENST00000439151	NM_022455.4	821	ggc/ggCTc																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17742945	17742945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	30	744	4	ENST00000250003.3:c.853G>T	p.Ala285Ser	p.A285S	ENST00000250003	NM_002478.4	285	Gct/Tct																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120647	115120647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	205	1131	1	ENST00000257566.3:c.359G>T	p.Gly120Val	p.G120V	ENST00000257566	NM_016569.3	120	gGc/gTc																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103515106	103515106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	34	497	0	ENST00000355739.4:c.1607A>G	p.Asn536Ser	p.N536S	ENST00000355739	NM_000123.3	536	aAt/aGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	215	887	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29684285	29684285	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	161	654	0	ENST00000358273.4:c.7870-2A>T		p.X2624_splice	ENST00000358273	NM_001042492.2	2624																																													NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39576684	39576684	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	64	597	0	ENST00000262039.4:c.974A>T	p.Asn325Ile	p.N325I	ENST00000262039	NM_002647.2	325	aAt/aTt																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40790086	40790086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	63	750	0	ENST00000373198.4:c.2645A>G	p.Asp882Gly	p.D882G	ENST00000373198	NM_133170.3	882	gAc/gGc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039904	47039904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0020883-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	138	479	0	ENST00000329236.7:c.1013A>T	p.Gln338Leu	p.Q338L	ENST00000329236	NM_001204466.1	338	cAg/cTg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2106654	2106654	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0018967-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			673	76	820	1	ENST00000219476.3:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000219476	NM_000548.3	220	Cag/Tag																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	382	524	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	336	967	1	ENST00000269305.4:c.581T>C	p.Leu194Pro	p.L194P	ENST00000269305	NM_001126112.2	194	cTt/cCt																																												NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24175836	24175837	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	331	963	1	ENST00000263121.7:c.1066_1067del	p.Leu356AspfsTer4	p.L356Dfs*4	ENST00000263121	NM_003073.3	355	aCT/a																																												NEWRECORD																																		
RPS6KB2	0	MSKCC	GRCh37	11	67196640	67196640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	46	812	1	ENST00000312629.5:c.169G>T	p.Val57Phe	p.V57F	ENST00000312629	NM_003952.2	57	Gtt/Ttt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32912711	32912711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	355	635	0	ENST00000380152.3:c.4219G>C	p.Glu1407Gln	p.E1407Q	ENST00000380152		1407	Gaa/Caa																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2098728	2098728	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	85	927	0	ENST00000219476.3:c.112T>G	p.Phe38Val	p.F38V	ENST00000219476	NM_000548.3	38	Ttt/Gtt																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93967993	93967993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020837-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	56	607	0	ENST00000369303.4:c.1934G>C	p.Gly645Ala	p.G645A	ENST00000369303	NM_004440.3	645	gGt/gCt																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95572535	95572535	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	205	391	1	ENST00000343455.3:c.2830C>T	p.Arg944Ter	p.R944*	ENST00000343455	NM_177438.2	944	Cga/Tga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	448	679	0	ENST00000269305.4:c.518T>G	p.Val173Gly	p.V173G	ENST00000269305	NM_001126112.2	173	gTg/gGg																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436386	52436386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			977	385	697	0	ENST00000460680.1:c.2108G>A	p.Gly703Glu	p.G703E	ENST00000460680	NM_004656.3	703	gGg/gAg																																												NEWRECORD																																		
WWTR1	0	MSKCC	GRCh37	3	149374828	149374828	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	376	318	0	ENST00000360632.3:c.266C>G	p.Ser89Trp	p.S89W	ENST00000360632	NM_015472.4	89	tCg/tGg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178922328	178922328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	713	556	0	ENST00000263967.3:c.1097C>G	p.Pro366Arg	p.P366R	ENST00000263967	NM_006218.2	366	cCc/cGc																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176562124	176562124	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	344	608	0	ENST00000439151.2:c.20T>C	p.Leu7Pro	p.L7P	ENST00000439151	NM_022455.4	7	cTa/cCa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509447	106509447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	403	658	2	ENST00000359195.3:c.1441G>A	p.Val481Ile	p.V481I	ENST00000359195	NM_002649.2	481	Gtc/Atc																																												NEWRECORD																																		
AGO2	0	MSKCC	GRCh37	8	141542531	141542531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1322	149	501	1	ENST00000220592.5:c.2455G>T	p.Asp819Tyr	p.D819Y	ENST00000220592	NM_012154.3	819	Gat/Tat																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123197027	123197027	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020777-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	41	648	0	ENST00000218089.9:c.1793A>T	p.Glu598Val	p.E598V	ENST00000218089	NM_001042749.1	598	gAa/gTa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	187	821	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198267360	198267360	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	160	740	0	ENST00000335508.6:c.1997A>T	p.Lys666Met	p.K666M	ENST00000335508	NM_012433.2	666	aAg/aTg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28964202	28964202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	90	453	0	ENST00000282397.4:c.1700C>A	p.Pro567Gln	p.P567Q	ENST00000282397	NM_002019.4	567	cCg/cAg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7163193	7163193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	147	750	2	ENST00000302850.5:c.1879G>T	p.Asp627Tyr	p.D627Y	ENST00000302850	NM_000208.2	627	Gat/Tat																																												NEWRECORD																																		
U2AF1	0	MSKCC	GRCh37	21	44524474	44524474	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020782-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	91	399	0	ENST00000291552.4:c.83G>C	p.Arg28Pro	p.R28P	ENST00000291552	NM_006758.2	28	cGt/cCt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	94	706	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40733217	40733217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	61	678	0	ENST00000373198.4:c.3589G>A	p.Glu1197Lys	p.E1197K	ENST00000373198	NM_133170.3	1197	Gaa/Aaa																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546761	9546761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	30	322	0	ENST00000353224.5:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000353224	NM_177990.2	421	Gac/Aac																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40733211	40733211	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	52	673	0	ENST00000373198.4:c.3595C>T	p.Gln1199Ter	p.Q1199*	ENST00000373198	NM_133170.3	1199	Cag/Tag																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29562746	29562746	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	48	638	0	ENST00000358273.4:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000358273	NM_001042492.2	1276	Cga/Tga																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	113	745	2	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38953634	38953634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146765449		P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	24	362	0	ENST00000357387.3:c.2719C>T	p.Arg907Cys	p.R907C	ENST00000357387	NM_152756.3	907	Cgt/Tgt																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189608648	189608648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	69	732	0	ENST00000264731.3:c.1723C>T	p.Gln575Ter	p.Q575*	ENST00000264731	NM_003722.4	575	Cag/Tag																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100922258	100922258	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	26	564	0	ENST00000325455.5:c.2254C>T	p.Gln752Ter	p.Q752*	ENST00000325455	NM_001202474.3	752	Cag/Tag																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934887	9934887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	53	695	2	ENST00000330684.3:c.1403C>T	p.Ser468Phe	p.S468F	ENST00000330684	NM_001134407.1	468	tCc/tTc																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93956676	93956676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	44	488	0	ENST00000369303.4:c.2560C>T	p.Arg854Cys	p.R854C	ENST00000369303	NM_004440.3	854	Cgt/Tgt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156354	106156354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	38	400	0	ENST00000380013.4:c.1255C>T	p.Pro419Ser	p.P419S	ENST00000380013	NM_001127208.2	419	Cct/Tct																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30050707	30050708	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	54	448	0	ENST00000338641.4:c.514dup	p.Arg172LysfsTer31	p.R172Kfs*31	ENST00000338641	NM_000268.3	170	cca/ccAa																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5222732	5222732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	100	881	0	ENST00000357368.4:c.3071C>T	p.Pro1024Leu	p.P1024L	ENST00000357368	NM_002850.3	1024	cCc/cTc																																												NEWRECORD																																		
DROSHA	0	MSKCC	GRCh37	5	31515295	31515295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	82	782	3	ENST00000344624.3:c.1090C>T	p.Arg364Cys	p.R364C	ENST00000344624		364	Cgt/Tgt																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249666	110249666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	379	1057	2	ENST00000374672.4:c.1009C>T	p.Pro337Ser	p.P337S	ENST00000374672	NM_004235.4	337	Cct/Tct																																												NEWRECORD																																		
LMO1	0	MSKCC	GRCh37	11	8251941	8251941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	107	804	1	ENST00000335790.3:c.136G>A	p.Glu46Lys	p.E46K	ENST00000335790	NM_002315.2	46	Gaa/Aaa																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81359060	81359060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	51	569	0	ENST00000222390.5:c.901G>A	p.Glu301Lys	p.E301K	ENST00000222390	NM_000601.4	301	Gaa/Aaa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42054037	42054037	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	23	413	0	ENST00000219905.7:c.7499C>T	p.Ser2500Leu	p.S2500L	ENST00000219905	NM_001164273.1	2500	tCg/tTg																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2962334	2962334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	66	861	0	ENST00000396946.4:c.2203G>A	p.Glu735Lys	p.E735K	ENST00000396946	NM_032415.4	735	Gaa/Aaa																																												NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	69050711	69050711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	40	625	0	ENST00000288368.4:c.4046C>T	p.Ser1349Phe	p.S1349F	ENST00000288368	NM_024870.2	1349	tCc/tTc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117715410	117715410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	40	596	0	ENST00000368508.3:c.1079G>A	p.Arg360Lys	p.R360K	ENST00000368508	NM_002944.2	360	aGa/aAa																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65321305	65321305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	106	785	0	ENST00000342505.4:c.1535C>T	p.Ser512Leu	p.S512L	ENST00000342505	NM_002227.2	512	tCg/tTg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16259453	16259453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	72	552	0	ENST00000375759.3:c.6718C>T	p.Pro2240Ser	p.P2240S	ENST00000375759	NM_015001.2	2240	Cct/Tct																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16260276	16260276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	73	546	1	ENST00000375759.3:c.7541C>T	p.Pro2514Leu	p.P2514L	ENST00000375759	NM_015001.2	2514	cCa/cTa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16262378	16262378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	61	352	0	ENST00000375759.3:c.9643G>A	p.Gly3215Arg	p.G3215R	ENST00000375759	NM_015001.2	3215	Ggg/Agg																																												NEWRECORD																																		
SESN2	0	MSKCC	GRCh37	1	28599253	28599254	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1079	151	1005	2	ENST00000253063.3:c.699_700delinsTT	p.Pro234Ser	p.P234S	ENST00000253063	NM_031459.4	233	ccCCct/ccTTct																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458234	120458234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	105	723	0	ENST00000256646.2:c.7111C>T	p.Pro2371Ser	p.P2371S	ENST00000256646	NM_024408.3	2371	Cca/Tca																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70451413	70451413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	55	672	0	ENST00000373644.4:c.6253G>A	p.Asp2085Asn	p.D2085N	ENST00000373644	NM_030625.2	2085	Gac/Aac																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123274777	123274777	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	113	698	0	ENST00000358487.5:c.1141T>A	p.Tyr381Asn	p.Y381N	ENST00000358487	NM_000141.4	381	Tac/Aac																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2161490	2161490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	65	740	1	ENST00000434045.2:c.37C>T	p.Pro13Ser	p.P13S	ENST00000434045	NM_001127598.1	13	Ccc/Tcc																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64128672	64128672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	106	767	0	ENST00000334205.4:c.529C>T	p.Leu177Phe	p.L177F	ENST00000334205	NM_003942.2	177	Ctc/Ttc																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118344888	118344888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	64	386	0	ENST00000534358.1:c.3014C>T	p.Ser1005Phe	p.S1005F	ENST00000534358	NM_005933.3	1005	tCc/tTc																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118360543	118360543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	59	581	0	ENST00000534358.1:c.4516C>T	p.His1506Tyr	p.H1506Y	ENST00000534358	NM_005933.3	1506	Cac/Tac																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118392012	118392013	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	53	613	1	ENST00000534358.1:c.11523_11524delinsTT	p.His3842Tyr	p.H3842Y	ENST00000534358	NM_005933.3	3841	atCCat/atTTat																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119149244	119149244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	67	657	0	ENST00000264033.4:c.1252T>A	p.Phe418Ile	p.F418I	ENST00000264033	NM_005188.3	418	Ttc/Atc																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119149294	119149294	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	95	669	0	ENST00000264033.4:c.1302T>G	p.Phe434Leu	p.F434L	ENST00000264033	NM_005188.3	434	ttT/ttG																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119155730	119155730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	118	860	0	ENST00000264033.4:c.1483C>T	p.Pro495Ser	p.P495S	ENST00000264033	NM_005188.3	495	Ccg/Tcg																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	432844	432844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	66	735	0	ENST00000399788.2:c.2072C>T	p.Ser691Phe	p.S691F	ENST00000399788	NM_001042603.1	691	tCc/tTc																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18644460	18644460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	34	714	1	ENST00000266497.5:c.2638C>T	p.Pro880Ser	p.P880S	ENST00000266497		880	Cct/Tct																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112926247	112926247	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	108	708	0	ENST00000351677.2:c.1380T>G	p.Ser460Arg	p.S460R	ENST00000351677	NM_002834.3	460	agT/agG																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81610228	81610228	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139352934		P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	49	523	0	ENST00000298171.2:c.1826G>A	p.Arg609Gln	p.R609Q	ENST00000298171	NM_000369.2	609	cGa/cAa																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95590864	95590864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	39	512	0	ENST00000343455.3:c.1045G>A	p.Asp349Asn	p.D349N	ENST00000343455	NM_177438.2	349	Gac/Aac																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42003357	42003357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	81	586	0	ENST00000219905.7:c.2894C>T	p.Pro965Leu	p.P965L	ENST00000219905	NM_001164273.1	965	cCa/cTa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42034789	42034789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	79	599	1	ENST00000219905.7:c.4631G>A	p.Ser1544Asn	p.S1544N	ENST00000219905	NM_001164273.1	1544	aGt/aAt																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42041524	42041525	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	59	699	0	ENST00000219905.7:c.5719_5720delinsTT	p.Pro1907Phe	p.P1907F	ENST00000219905	NM_001164273.1	1907	CCt/TTt																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88680731	88680731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	103	797	0	ENST00000360948.2:c.526G>A	p.Glu176Lys	p.E176K	ENST00000360948	NM_001012338.2	176	Gag/Aag																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91312729	91312729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	70	495	1	ENST00000355112.3:c.2468C>T	p.Ser823Phe	p.S823F	ENST00000355112	NM_000057.2	823	tCt/tTt																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	396235	396235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	141	794	1	ENST00000262320.3:c.791C>T	p.Pro264Leu	p.P264L	ENST00000262320	NM_003502.3	264	cCc/cTc																																												NEWRECORD																																		
SLX4	0	MSKCC	GRCh37	16	3646219	3646219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	130	948	1	ENST00000294008.3:c.1859G>A	p.Arg620Lys	p.R620K	ENST00000294008	NM_032444.2	620	aGg/aAg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3781431	3781431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	85	539	0	ENST00000262367.5:c.4934C>T	p.Thr1645Ile	p.T1645I	ENST00000262367	NM_004380.2	1645	aCc/aTc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857506	9857506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	52	498	0	ENST00000330684.3:c.3895C>T	p.Pro1299Ser	p.P1299S	ENST00000330684	NM_001134407.1	1299	Cct/Tct																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858032	9858032	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	54	676	0	ENST00000330684.3:c.3369G>T	p.Glu1123Asp	p.E1123D	ENST00000330684	NM_001134407.1	1123	gaG/gaT																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993051	72993051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1084	117	970	1	ENST00000268489.5:c.994G>A	p.Asp332Asn	p.D332N	ENST00000268489	NM_006885.3	332	Gac/Aac																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81934290	81934290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	109	883	0	ENST00000359376.3:c.1267G>A	p.Glu423Lys	p.E423K	ENST00000359376	NM_002661.3	423	Gaa/Aaa																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81990366	81990366	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	75	675	0	ENST00000359376.3:c.3637C>T	p.Gln1213Ter	p.Q1213*	ENST00000359376	NM_002661.3	1213	Cag/Tag																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29527574	29527580	+	frameshift_variant	Frame_Shift_Del	DEL	CATTTTC	CATTTTC	-			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	44	747	0	ENST00000358273.4:c.1024_1030del	p.Ile342TyrfsTer32	p.I342Yfs*32	ENST00000358273	NM_001042492.2	341	gtCATTTTC/gt																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41244547	41244547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	62	853	0	ENST00000357654.3:c.3001G>A	p.Glu1001Lys	p.E1001K	ENST00000357654	NM_007294.3	1001	Gaa/Aaa																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59878769	59878769	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	53	552	1	ENST00000259008.2:c.985C>T	p.Gln329Ter	p.Q329*	ENST00000259008	NM_032043.2	329	Caa/Taa																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63532590	63532590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	123	879	1	ENST00000307078.5:c.1989G>A	p.Trp663Ter	p.W663*	ENST00000307078	NM_004655.3	663	tgG/tgA																																												NEWRECORD																																		
SRSF2	0	MSKCC	GRCh37	17	74732310	74732310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	32	370	0	ENST00000359995.5:c.599C>T	p.Ser200Phe	p.S200F	ENST00000359995	NM_001195427.1	200	tCc/tTc																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78796897	78796897	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	91	618	0	ENST00000306801.3:c.1010T>G	p.Phe337Cys	p.F337C	ENST00000306801	NM_020761.2	337	tTc/tGc																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10247910	10247910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	108	863	0	ENST00000340748.4:c.4292C>T	p.Ala1431Val	p.A1431V	ENST00000340748		1431	gCc/gTc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610579	10610579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	125	838	1	ENST00000171111.5:c.131C>T	p.Pro44Leu	p.P44L	ENST00000171111	NM_203500.1	44	cCc/cTc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15272321	15272321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	144	1089	0	ENST00000263388.2:c.6118G>A	p.Gly2040Arg	p.G2040R	ENST00000263388	NM_000435.2	2040	Ggg/Agg																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15349565	15349565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	146	1047	1	ENST00000263377.2:c.4009C>T	p.Arg1337Cys	p.R1337C	ENST00000263377	NM_058243.2	1337	Cgc/Tgc																																												NEWRECORD																																		
UPF1	0	MSKCC	GRCh37	19	18961502	18961502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	46	488	0	ENST00000262803.5:c.635C>T	p.Pro212Leu	p.P212L	ENST00000262803	NM_002911.3	212	cCc/cTc																																												NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36223966	36223967	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	143	1021	4	ENST00000222270.7:c.6516_6517delinsTT	p.Arg2173Trp	p.R2173W	ENST00000222270	NM_014727.1	2172	gtCCgg/gtTTgg																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41749522	41749522	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	52	543	0	ENST00000301178.4:c.1447G>A	p.Glu483Lys	p.E483K	ENST00000301178	NM_021913.4	483	Gaa/Aaa																																												NEWRECORD																																		
RRAS	0	MSKCC	GRCh37	19	50143307	50143307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	22	198	0	ENST00000246792.3:c.49G>A	p.Gly17Arg	p.G17R	ENST00000246792	NM_006270.3	17	Ggg/Agg																																												NEWRECORD																																		
EPAS1	0	MSKCC	GRCh37	2	46587882	46587882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	62	541	0	ENST00000263734.3:c.560C>T	p.Ser187Leu	p.S187L	ENST00000263734	NM_001430.4	187	tCa/tTa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212587120	212587120	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	29	447	0	ENST00000342788.4:c.881C>T	p.Pro294Leu	p.P294L	ENST00000342788	NM_005235.2	294	cCa/cTa																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9624913	9624913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	60	624	0	ENST00000353224.5:c.64C>T	p.His22Tyr	p.H22Y	ENST00000353224	NM_177990.2	22	Cat/Tat																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40747137	40747138	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	54	579	3	ENST00000373198.4:c.2944_2945delinsTT	p.Pro982Leu	p.P982L	ENST00000373198	NM_133170.3	982	CCg/TTg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40899063	40899063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	118	648	1	ENST00000373198.4:c.2207G>A	p.Gly736Glu	p.G736E	ENST00000373198	NM_133170.3	736	gGg/gAg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40944364	40944364	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	65	558	1	ENST00000373198.4:c.2138G>A	p.Gly713Glu	p.G713E	ENST00000373198	NM_133170.3	713	gGa/gAa																																												NEWRECORD																																		
RTEL1	0	MSKCC	GRCh37	20	62324601	62324601	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146221660		P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	110	785	0	ENST00000508582.2:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000508582		1010	cGa/cAa																																												NEWRECORD																																		
MAPK1	0	MSKCC	GRCh37	22	22127238	22127238	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	260	871	0	ENST00000215832.6:c.890A>G	p.Asn297Ser	p.N297S	ENST00000215832	NM_002745.4	297	aAc/aGc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41545150	41545150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1394	114	777	0	ENST00000263253.7:c.2350C>T	p.Pro784Ser	p.P784S	ENST00000263253	NM_001429.3	784	Ccg/Tcg																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30715633	30715633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	52	373	0	ENST00000359013.4:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000359013	NM_001024847.2	456	Gaa/Aaa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47162137	47162137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	61	513	0	ENST00000409792.3:c.3989C>T	p.Ser1330Phe	p.S1330F	ENST00000409792	NM_014159.6	1330	tCc/tTc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164495	47164495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	44	492	1	ENST00000409792.3:c.1631C>T	p.Ser544Leu	p.S544L	ENST00000409792	NM_014159.6	544	tCa/tTa																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119585450	119585451	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	27	474	3	ENST00000316626.5:c.934_935delinsTT	p.Thr312Phe	p.T312F	ENST00000316626		312	ACc/TTc																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185183534	185183534	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	63	341	0	ENST00000265026.3:c.1389-1G>A		p.X463_splice	ENST00000265026	NM_004721.4	463																																													NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189590699	189590699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	70	645	1	ENST00000264731.3:c.1264G>A	p.Glu422Lys	p.E422K	ENST00000264731	NM_003722.4	422	Gaa/Aaa																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612284	189612284	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	40	392	0	ENST00000264731.3:c.2036G>A	p.Gly679Glu	p.G679E	ENST00000264731	NM_003722.4	679	gGg/gAg																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55161385	55161385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	77	631	0	ENST00000257290.5:c.3216G>A	p.Met1072Ile	p.M1072I	ENST00000257290	NM_006206.4	1072	atG/atA																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66230905	66230905	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	28	493	0	ENST00000273854.3:c.2066T>A	p.Val689Asp	p.V689D	ENST00000273854	NM_004439.5	689	gTt/gAt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156321	106156321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	49	415	0	ENST00000380013.4:c.1222C>T	p.Pro408Ser	p.P408S	ENST00000380013	NM_001127208.2	408	Ccc/Tcc																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106157923	106157923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	39	345	0	ENST00000380013.4:c.2824C>T	p.Pro942Ser	p.P942S	ENST00000380013	NM_001127208.2	942	Ccc/Tcc																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1295228	1295230	+	upstream_gene_variant	5'Flank	ONP	GGG	GGG	AAA			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	59	577	1				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
DROSHA	0	MSKCC	GRCh37	5	31526801	31526801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	87	798	0	ENST00000344624.3:c.239C>T	p.Pro80Leu	p.P80L	ENST00000344624		80	cCc/cTc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180047200	180047200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	102	909	0	ENST00000261937.6:c.2515G>A	p.Glu839Lys	p.E839K	ENST00000261937	NM_182925.4	839	Gaa/Aaa																																												NEWRECORD																																		
STK19	0	MSKCC	GRCh37	6	31940126	31940126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1489	198	966	0	ENST00000375331.2:c.268C>T	p.Pro90Ser	p.P90S	ENST00000375331	NM_004197.1	90	Cct/Tct																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32188203	32188203	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	101	719	0	ENST00000375023.3:c.1138C>G	p.Leu380Val	p.L380V	ENST00000375023	NM_004557.3	380	Ctc/Gtc																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288927	33288927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	78	436	0	ENST00000374542.5:c.625G>A	p.Glu209Lys	p.E209K	ENST00000374542	NM_001141970.1	209	Gag/Aag																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117609926	117609926	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	44	671	0	ENST00000368508.3:c.6773T>A	p.Ile2258Asn	p.I2258N	ENST00000368508	NM_002944.2	2258	aTt/aAt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117662320	117662320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	49	827	0	ENST00000368508.3:c.5057G>A	p.Arg1686Lys	p.R1686K	ENST00000368508	NM_002944.2	1686	aGa/aAa																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2959005	2959005	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	41	571	0	ENST00000396946.4:c.2510+1G>A		p.X837_splice	ENST00000396946	NM_032415.4	837																																													NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13978823	13978823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	67	767	1	ENST00000405192.2:c.284C>T	p.Pro95Leu	p.P95L	ENST00000405192	NM_001163147.1	95	cCa/cTa																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55224334	55224335	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	38	565	2	ENST00000275493.2:c.1115_1116delinsAT	p.Leu372His	p.L372H	ENST00000275493	NM_005228.3	372	cTG/cAT																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151860100	151860100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	28	439	0	ENST00000262189.6:c.10562C>T	p.Ser3521Leu	p.S3521L	ENST00000262189	NM_170606.2	3521	tCa/tTa																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151874754	151874754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	62	413	0	ENST00000262189.6:c.7784C>T	p.Pro2595Leu	p.P2595L	ENST00000262189	NM_170606.2	2595	cCc/cTc																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152346392	152346392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	50	715	0	ENST00000359321.1:c.178C>T	p.His60Tyr	p.H60Y	ENST00000359321	NM_005431.1	60	Cac/Tac																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8340446	8340446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	58	550	1	ENST00000356435.5:c.5150C>T	p.Thr1717Ile	p.T1717I	ENST00000356435		1717	aCc/aTc																																												NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27212740	27212740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	125	971	0	ENST00000380036.4:c.2722G>A	p.Gly908Arg	p.G908R	ENST00000380036	NM_000459.3	908	Gga/Aga																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93606553	93606553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	69	751	0	ENST00000375746.1:c.373G>A	p.Glu125Lys	p.E125K	ENST00000375746	NM_001174167.1	125	Gaa/Aaa																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53228066	53228066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	79	356	2	ENST00000375401.3:c.2248C>T	p.Arg750Trp	p.R750W	ENST00000375401	NM_004187.3	750	Cgg/Tgg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70344170	70344170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	82	374	0	ENST00000374080.3:c.1906C>T	p.Pro636Ser	p.P636S	ENST00000374080		636	Ccc/Tcc																																												NEWRECORD																																		
FAM58A	0	MSKCC	GRCh37	X	152858086	152858087	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0020817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	114	418	1	ENST00000406277.2:c.528_529delinsAT	p.Tyr176_His177delinsTer	p.Y176_H177delins*	ENST00000406277	NM_152274.4	176	taCCat/taATat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	259	1028	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81916891	81916891	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	138	1095	0	ENST00000359376.3:c.710A>T	p.Asp237Val	p.D237V	ENST00000359376	NM_002661.3	237	gAt/gTt																																												NEWRECORD																																		
ERF	0	MSKCC	GRCh37	19	42753719	42753719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			952	166	1212	2	ENST00000222329.4:c.545G>T	p.Gly182Val	p.G182V	ENST00000222329	NM_006494.2	182	gGc/gTc																																												NEWRECORD																																		
PPP4R2	0	MSKCC	GRCh37	3	73114747	73114747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	52	370	0	ENST00000356692.5:c.1128C>G	p.Asp376Glu	p.D376E	ENST00000356692		376	gaC/gaG																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	202	912	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	109	588	1				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46243472	46243472	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	96	599	0	ENST00000334344.6:c.1825C>T	p.Gln609Ter	p.Q609*	ENST00000334344	NM_152641.2	609	Cag/Tag																																												NEWRECORD																																		
ELF3	0	MSKCC	GRCh37	1	201981195	201981202	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTCACG	TTCTCACG	-			P-0020821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	139	1048	1	ENST00000359651.3:c.274_281del	p.Phe92MetfsTer2	p.F92Mfs*2	ENST00000359651		92	TTCTCACGa/a																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118343528	118343529	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	84	575	2	ENST00000534358.1:c.1660dupC	p.Gln554ProfsTer27	p.Q554Pfs*27	ENST00000534358	NM_005933.3	552	gcc/gCcc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180048760	180048760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	119	1042	1	ENST00000261937.6:c.1802C>T	p.Ala601Val	p.A601V	ENST00000261937	NM_182925.4	601	gCg/gTg																																												NEWRECORD																																		
PRDM14	0	MSKCC	GRCh37	8	70980520	70980520	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	194	1008	0	ENST00000276594.2:c.857A>C	p.Lys286Thr	p.K286T	ENST00000276594	NM_024504.3	286	aAa/aCa																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47028758	47028758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020821-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	99	927	1	ENST00000329236.7:c.62G>A	p.Arg21His	p.R21H	ENST00000329236	NM_001204466.1	21	cGc/cAc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	272	737	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	226	452	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149808	202149808	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	267	739	1	ENST00000358485.4:c.1249C>T	p.Gln417Ter	p.Q417*	ENST00000358485	NM_001080125.1	417	Cag/Tag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44910953	44910953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			110	204	223	0	ENST00000377967.4:c.655-1G>A		p.X219_splice	ENST00000377967	NM_021140.2	219																																													NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971048	21971058	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCGCCCCG	GCCGCGCCCCG	-			P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	353	590	0	ENST00000304494.5:c.300_310delCGGGGCGCGGC	p.Ala102ArgfsTer14	p.A102Rfs*14	ENST00000304494	NM_000077.4	100	gcCGGGGCGCGGCtg/gctg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971048	21971058	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCGCCCCG	GCCGCGCCCCG	-			P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	353	590	0	ENST00000304494.5:c.300_310delCGGGGCGCGGC	p.Ala102ArgfsTer14	p.A102Rfs*14	ENST00000304494	NM_000077.4	100	gcCGGGGCGCGGCtg/gctg																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971048	21971058	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCGCCCCG	GCCGCGCCCCG	-			P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	353	590	0	ENST00000304494.5:c.300_310delCGGGGCGCGGC	p.Ala102ArgfsTer14	p.A102Rfs*14	ENST00000304494	NM_000077.4	100	gcCGGGGCGCGGCtg/gctg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	304	677	1	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225																																													NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133738172	133738172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	183	566	0	ENST00000318560.5:c.572G>A	p.Arg191His	p.R191H	ENST00000318560	NM_005157.4	191	cGc/cAc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	260	944	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	106	324	1	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0020826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	346	972	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12032594	12032594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	203	732	0	ENST00000353533.5:c.1030G>T	p.Val344Phe	p.V344F	ENST00000353533	NM_003010.3	344	Gtc/Ttc																																												NEWRECORD																																		
XIAP	0	MSKCC	GRCh37	X	123019657	123019657	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	135	902	0	ENST00000355640.3:c.145C>T	p.Arg49Ter	p.R49*	ENST00000355640		49	Cga/Tga																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1094	370	709	3	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0020825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			972	264	716	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8404576	8404576	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146844299		P-0020825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	149	384	0	ENST00000356435.5:c.4171G>A	p.Ala1391Thr	p.A1391T	ENST00000356435		1391	Gca/Aca																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89653780	89653781	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0020825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	95	435	0	ENST00000371953.3:c.80-1_80del		p.X27_splice	ENST00000371953	NM_000314.4	27																																													NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88679790	88679790	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	299	728	0	ENST00000360948.2:c.673G>T	p.Asp225Tyr	p.D225Y	ENST00000360948	NM_001012338.2	225	Gac/Tac																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112154966	112154970	+	frameshift_variant	Frame_Shift_Del	DEL	ATACG	ATACG	C			P-0020825-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	299	753	0	ENST00000257430.4:c.1237_1241delinsC	p.Ile413ProfsTer40	p.I413Pfs*40	ENST00000257430	NM_000038.5	413	ATACGc/Cc																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0020824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	129	698	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	142	711	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577279	64577295	+	frameshift_variant	Frame_Shift_Del	DEL	GACGGCGCCTCGGATCT	GACGGCGCCTCGGATCT	-			P-0020824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	283	943	2	ENST00000337652.1:c.287_303del	p.Gln96ArgfsTer15	p.Q96Rfs*15	ENST00000337652	NM_130803.2	96	cAGATCCGAGGCGCCGTC/c																																												NEWRECORD																																		
TP53BP1	0	MSKCC	GRCh37	15	43748768	43748768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	39	1230	2	ENST00000382044.4:c.2038C>T	p.Gln680Ter	p.Q680*	ENST00000382044	NM_001141980.1	680	Caa/Taa																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0020724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	101	958	1	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	293	1147	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0020806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	180	751	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	96	351	2	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212566709	212566709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	121	486	0	ENST00000342788.4:c.1472G>T	p.Arg491Ile	p.R491I	ENST00000342788	NM_005235.2	491	aGa/aTa																																												NEWRECORD																																		
CDK8	1024	MSKCC	GRCh37	13	26967567	26967567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	913	883	0	ENST00000381527.3:c.710G>A	p.Arg237Gln	p.R237Q	ENST00000381527	NM_001260.1	237	cGa/cAa																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114920444	114920444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	352	727	0	ENST00000543371.1:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000543371	NM_001198531.1	462	cCg/cTg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	356	969	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0020762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	425	814	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32910683	32910683	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	170	757	0	ENST00000380152.3:c.2191G>T	p.Glu731Ter	p.E731*	ENST00000380152		731	Gaa/Taa																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95562569	95562569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	266	485	0	ENST00000343455.3:c.4688T>C	p.Val1563Ala	p.V1563A	ENST00000343455	NM_177438.2	1563	gTg/gCg																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151879112	151879113	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ATTTGCTGTTGTCTCATTCATTTGAAGGGGCC			P-0020762-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	267	859	0	ENST00000262189.6:c.5801_5832dup	p.Arg1945GlyfsTer5	p.R1945Gfs*5	ENST00000262189	NM_170606.2	1944	-/GGCCCCTTCAAATGAATGAGACAACAGCAAAT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0020579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	204	923	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225																																													NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221319	1221320	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	304	1030	0	ENST00000326873.7:c.842_843insT	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	281	ccg/ccTg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112344	115112344	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	72	308	1	ENST00000257566.3:c.1396A>T	p.Lys466Ter	p.K466*	ENST00000257566	NM_016569.3	466	Aag/Tag																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29652920	29652920	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	136	657	0	ENST00000358273.4:c.4918G>T	p.Glu1640Ter	p.E1640*	ENST00000358273	NM_001042492.2	1640	Gaa/Taa																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94066472	94066472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	95	534	0	ENST00000369303.4:c.1287G>T	p.Arg429Ser	p.R429S	ENST00000369303	NM_004440.3	429	agG/agT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	264	1217	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15983784	15983784	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150513105		P-0020644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	211	844	3	ENST00000268712.3:c.3338G>A	p.Arg1113Gln	p.R1113Q	ENST00000268712	NM_006311.3	1113	cGa/cAa																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37686985	37686985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	211	795	1	ENST00000447079.4:c.3889G>A	p.Val1297Met	p.V1297M	ENST00000447079	NM_015083.1	1297	Gtg/Atg																																												NEWRECORD																																		
EPCAM	0	MSKCC	GRCh37	2	47601175	47601175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	149	765	0	ENST00000263735.4:c.413G>A	p.Arg138Gln	p.R138Q	ENST00000263735	NM_002354.2	138	cGa/cAa																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971159	21971159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	188	956	1	ENST00000304494.5:c.199G>A	p.Gly67Ser	p.G67S	ENST00000304494	NM_000077.4	67	Ggc/Agc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971159	21971159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	188	956	1	ENST00000304494.5:c.199G>A	p.Gly67Ser	p.G67S	ENST00000304494	NM_000077.4	67	Ggc/Agc																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971159	21971159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020644-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	188	956	1	ENST00000304494.5:c.199G>A	p.Gly67Ser	p.G67S	ENST00000304494	NM_000077.4	67	Ggc/Agc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020629-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	8	435	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	1004	877	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11264742	11264742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	428	968	0	ENST00000361445.4:c.3820A>G	p.Arg1274Gly	p.R1274G	ENST00000361445	NM_004958.3	1274	Agg/Ggg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023576	27023576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	225	451	0	ENST00000324856.7:c.682G>T	p.Ala228Ser	p.A228S	ENST00000324856	NM_006015.4	228	Gcc/Tcc																																												NEWRECORD																																		
CYLD	0	MSKCC	GRCh37	16	50783685	50783685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	397	856	0	ENST00000398568.2:c.76C>T	p.Gln26Ter	p.Q26*	ENST00000398568	NM_001042412.1	26	Caa/Taa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	376	759	0	ENST00000269305.4:c.560-2A>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																													NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221260	1221260	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	808	943	2	ENST00000326873.7:c.783C>A	p.Tyr261Ter	p.Y261*	ENST00000326873	NM_000455.4	261	taC/taA																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212530092	212530092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	300	570	0	ENST00000342788.4:c.1827T>A	p.Asp609Glu	p.D609E	ENST00000342788	NM_005235.2	609	gaT/gaA																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177630	56177630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	315	565	1	ENST00000399503.3:c.2603C>T	p.Ala868Val	p.A868V	ENST00000399503	NM_005921.1	868	gCc/gTc																																												NEWRECORD																																		
TAP1	0	MSKCC	GRCh37	6	32816571	32816571	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	491	1053	0	ENST00000354258.4:c.1604C>G	p.Ser535Ter	p.S535*	ENST00000354258	NM_000593.5	535	tCa/tGa																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81381507	81381507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	144	628	0	ENST00000222390.5:c.554G>A	p.Gly185Glu	p.G185E	ENST00000222390	NM_000601.4	185	gGg/gAg																																												NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27202954	27202954	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs112475919		P-0020721-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	165	811	1	ENST00000380036.4:c.2046C>A	p.Asp682Glu	p.D682E	ENST00000380036	NM_000459.3	682	gaC/gaA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	626	1050	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA																																												NEWRECORD																																		
FGF4	0	MSKCC	GRCh37	11	69589698	69589698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	63	177	0	ENST00000168712.1:c.155C>T	p.Ala52Val	p.A52V	ENST00000168712	NM_002007.2	52	gCg/gTg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101300	27101301	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	166	808	0	ENST00000324856.7:c.4582_4583del	p.Arg1528AsnfsTer3	p.R1528Nfs*3	ENST00000324856	NM_006015.4	1528	CGa/a																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21549394	21549394	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148935054		P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	42	624	0	ENST00000382592.4:c.2882G>A	p.Arg961Gln	p.R961Q	ENST00000382592	NM_014572.2	961	cGg/cAg																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060664	38060664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	769	1108	4	ENST00000250448.2:c.1325C>A	p.Ala442Asp	p.A442D	ENST00000250448	NM_004496.3	442	gCc/gAc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30142898	30142898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	509	1018	0	ENST00000389048.3:c.628G>A	p.Ala210Thr	p.A210T	ENST00000389048	NM_004304.4	210	Gcc/Acc																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202141617	202141617	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	132	647	0	ENST00000358485.4:c.905A>G	p.Asn302Ser	p.N302S	ENST00000358485	NM_001080125.1	302	aAt/aGt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175069	112175069	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020588-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			123	98	295	0	ENST00000257430.4:c.3778C>T	p.Gln1260Ter	p.Q1260*	ENST00000257430	NM_000038.5	1260	Cag/Tag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	309	744	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56493688	56493688	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020682-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	73	561	0	ENST00000267101.3:c.3004G>C	p.Glu1002Gln	p.E1002Q	ENST00000267101	NM_001982.3	1002	Gaa/Caa																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	153	567	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	101	595	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg																																												NEWRECORD																																		
RTEL1	0	MSKCC	GRCh37	20	62298844	62298844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020665-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	117	601	0	ENST00000508582.2:c.709C>T	p.Arg237Trp	p.R237W	ENST00000508582		237	Cgg/Tgg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0020701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	157	786	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	135	842	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																												NEWRECORD																																		
STAT5B	0	MSKCC	GRCh37	17	40353860	40353860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	89	627	1	ENST00000293328.3:c.2260G>A	p.Asp754Asn	p.D754N	ENST00000293328	NM_012448.3	754	Gat/Aat																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533790	63533790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	49	744	0	ENST00000307078.5:c.1364C>T	p.Pro455Leu	p.P455L	ENST00000307078	NM_004655.3	455	cCa/cTa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27089590	27089591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	75	704	0	ENST00000324856.7:c.2548dup	p.Tyr850LeufsTer22	p.Y850Lfs*22	ENST00000324856	NM_006015.4	849	cct/ccTt																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100999176	100999176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	85	1022	0	ENST00000325455.5:c.626C>A	p.Pro209Gln	p.P209Q	ENST00000325455	NM_001202474.3	209	cCa/cAa																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58734188	58734188	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	61	579	0	ENST00000305921.3:c.1246A>C	p.Thr416Pro	p.T416P	ENST00000305921	NM_003620.3	416	Aca/Cca																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	118	597	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	144	829	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55241726	55241726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	57	736	1	ENST00000275493.2:c.2174C>T	p.Thr725Met	p.T725M	ENST00000275493	NM_005228.3	725	aCg/aTg																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142272146	142272146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	59	744	0	ENST00000350721.4:c.2728G>A	p.Glu910Lys	p.E910K	ENST00000350721	NM_001184.3	910	Gaa/Aaa																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28623782	28623782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	39	830	0	ENST00000241453.7:c.872C>T	p.Ala291Val	p.A291V	ENST00000241453	NM_004119.2	291	gCa/gTa																																												NEWRECORD																																		
RAD51	0	MSKCC	GRCh37	15	41011095	41011095	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	36	734	0	ENST00000267868.3:c.528G>C	p.Glu176Asp	p.E176D	ENST00000267868	NM_002875.4	176	gaG/gaC																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81944253	81944253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	55	915	0	ENST00000359376.3:c.1862A>C	p.His621Pro	p.H621P	ENST00000359376	NM_002661.3	621	cAc/cCc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11130353	11130353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			730	50	904	3	ENST00000344626.4:c.2592C>G	p.Ile864Met	p.I864M	ENST00000344626	NM_003072.3	864	atC/atG																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227661935	227661935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	78	869	0	ENST00000305123.5:c.1520C>A	p.Ala507Asp	p.A507D	ENST00000305123	NM_005544.2	507	gCt/gAt																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183734	10183734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	55	889	0	ENST00000256474.2:c.203C>G	p.Ser68Trp	p.S68W	ENST00000256474	NM_000551.3	68	tCg/tGg																																												NEWRECORD																																		
HIST1H2BD	0	MSKCC	GRCh37	6	26158564	26158564	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	52	834	0	ENST00000289316.2:c.167C>G	p.Ser56Cys	p.S56C	ENST00000289316	NM_138720.2	56	tCt/tGt																																												NEWRECORD																																		
XIAP	0	MSKCC	GRCh37	X	123020086	123020086	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	54	1097	1	ENST00000355640.3:c.574A>T	p.Thr192Ser	p.T192S	ENST00000355640		192	Aca/Tca																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	39	611	1	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81554355	81554355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	35	576	0	ENST00000298171.2:c.379del	p.Leu127SerfsTer2	p.L127Sfs*2	ENST00000298171	NM_000369.2	125	ctC/ct																																												NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	64	661	1	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86672318	86672318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	48	610	2	ENST00000274376.6:c.2120G>A	p.Arg707His	p.R707H	ENST00000274376	NM_002890.2	707	cGt/cAt																																												NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	63	352	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153249361	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	26	586	1	ENST00000281708.4:c.1417delA	p.Arg473GlufsTer25	p.R473Efs*25	ENST00000281708	NM_033632.3	473	Aga/ga																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25467197	25467197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	39	547	1	ENST00000264709.3:c.1678G>A	p.Val560Met	p.V560M	ENST00000264709	NM_175629.2	560	Gtg/Atg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53228172	53228172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	44	300	1	ENST00000375401.3:c.2230C>T	p.Arg744Trp	p.R744W	ENST00000375401	NM_004187.3	744	Cgg/Tgg																																												NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27213538	27213538	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	45	680	0	ENST00000380036.4:c.2938del	p.Ile980Ter	p.I980*	ENST00000380036	NM_000459.3	978	gcA/gc																																												NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	43	690	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																												NEWRECORD																																		
SPRED1	161742	MSKCC	GRCh37	15	38614463	38614463	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	32	613	0	ENST00000299084.4:c.234del	p.Asp79ThrfsTer42	p.D79Tfs*42	ENST00000299084	NM_152594.2	77	Aaa/aa																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65303664	65303664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	46	763	0	ENST00000342505.4:c.3091G>A	p.Asp1031Asn	p.D1031N	ENST00000342505	NM_002227.2	1031	Gat/Aat																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100998598	100998598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	39	554	4	ENST00000325455.5:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000325455	NM_001202474.3	402	Cgt/Tgt																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856428	111856428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	40	379	1	ENST00000341259.2:c.479C>T	p.Ala160Val	p.A160V	ENST00000341259	NM_005475.2	160	gCt/gTt																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88476364	88476364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	48	751	0	ENST00000360948.2:c.1768G>A	p.Glu590Lys	p.E590K	ENST00000360948	NM_001012338.2	590	Gag/Aag																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91308628	91308628	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	30	551	0	ENST00000355112.3:c.2177A>G	p.Lys726Arg	p.K726R	ENST00000355112	NM_000057.2	726	aAg/aGg																																												NEWRECORD																																		
SLX4	0	MSKCC	GRCh37	16	3640550	3640550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	68	818	0	ENST00000294008.3:c.3089C>T	p.Pro1030Leu	p.P1030L	ENST00000294008	NM_032444.2	1030	cCg/cTg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29550577	29550577	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	18	373	0	ENST00000358273.4:c.1841del	p.Asn614IlefsTer17	p.N614Ifs*17	ENST00000358273	NM_001042492.2	613	Aaa/aa																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117613	70117614	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAG			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	58	719	0	ENST00000245479.2:c.84_86dup	p.Glu28dup	p.E28dup	ENST00000245479	NM_000346.3	28	-/GAG																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10252721	10252721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	71	652	0	ENST00000340748.4:c.3244C>T	p.Arg1082Cys	p.R1082C	ENST00000340748		1082	Cgc/Tgc																																												NEWRECORD																																		
UPF1	0	MSKCC	GRCh37	19	18964066	18964066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	52	522	2	ENST00000262803.5:c.1063C>T	p.Arg355Trp	p.R355W	ENST00000262803	NM_002911.3	355	Cgg/Tgg																																												NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36211139	36211139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1276	74	989	1	ENST00000222270.7:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000222270	NM_014727.1	297	cGa/cAa																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99189340	99189340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	101	724	0	ENST00000074304.5:c.2596G>A	p.Val866Met	p.V866M	ENST00000074304	NM_001134224.1	866	Gtg/Atg																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178095826	178095826	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	89	598	0	ENST00000397062.3:c.1505G>A	p.Arg502His	p.R502H	ENST00000397062	NM_006164.4	502	cGt/cAt																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1803654	1803654	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	62	918	0	ENST00000260795.2:c.832T>C	p.Tyr278His	p.Y278H	ENST00000260795		278	Tac/Cac																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86645047	86645047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	28	441	0	ENST00000274376.6:c.1122del	p.Val376Ter	p.V376*	ENST00000274376	NM_002890.2	373	agT/ag																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30671889	30671889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	109	837	1	ENST00000376406.3:c.5071G>T	p.Ala1691Ser	p.A1691S	ENST00000376406	NM_014641.2	1691	Gct/Tct																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117638307	117638307	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020729-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	26	468	0	ENST00000368508.3:c.6134C>T	p.Thr2045Met	p.T2045M	ENST00000368508	NM_002944.2	2045	aCg/aTg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0020767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	889	1032	10	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30732951	30732951	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs863223854		P-0020767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	95	532	0	ENST00000359013.4:c.1639G>A	p.Asp547Asn	p.D547N	ENST00000359013	NM_001024847.2	547	Gac/Aac																																												NEWRECORD																																		
HIST1H3D	0	MSKCC	GRCh37	6	26197331	26197331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	155	895	0	ENST00000356476.2:c.148C>G	p.Arg50Gly	p.R50G	ENST00000356476		50	Cgc/Ggc																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106552990	106552990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	136	963	0	ENST00000369096.4:c.955G>C	p.Glu319Gln	p.E319Q	ENST00000369096	NM_001198.3	319	Gag/Cag																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116380076	116380077	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0020767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	120	979	2	ENST00000397752.3:c.1465_1466delinsTT	p.Glu489Leu	p.E489L	ENST00000397752	NM_000245.2	489	GAa/TTa																																												NEWRECORD																																		
XIAP	0	MSKCC	GRCh37	X	123020117	123020117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020767-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	75	1260	0	ENST00000355640.3:c.605G>T	p.Cys202Phe	p.C202F	ENST00000355640		202	tGt/tTt																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0020506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	338	688	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577561	7577566	+	inframe_deletion	In_Frame_Del	DEL	ACTGTT	ACTGTT	-			P-0020506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	327	886	1	ENST00000269305.4:c.715_720delAACAGT	p.Asn239_Ser240del	p.N239_S240del	ENST00000269305	NM_001126112.2	239	AACAGT/-																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187560938	187560938	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020506-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	33	533	0	ENST00000441802.2:c.3581-1G>A		p.X1194_splice	ENST00000441802	NM_005245.3	1194																																													NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020585-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	96	586	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578546	7578562	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGGAGTACTGTAGGA	AGGGGAGTACTGTAGGA	-			P-0020367-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			437	166	849	1	ENST00000269305.4:c.376-8_384del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																													NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150001395	150001395	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	192	1064	1	ENST00000253339.5:c.2209C>T	p.Arg737Ter	p.R737*	ENST00000253339		737	Cga/Tga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105887	27105887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020649-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	295	788	0	ENST00000324856.7:c.5498G>A	p.Arg1833His	p.R1833H	ENST00000324856	NM_006015.4	1833	cGt/cAt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	53	700	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28895610	28895610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	24	524	0	ENST00000282397.4:c.3164G>A	p.Arg1055Lys	p.R1055K	ENST00000282397	NM_002019.4	1055	aGa/aAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	57	771	1	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																													NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31017769	31017769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	46	582	0	ENST00000375687.4:c.631G>T	p.Ala211Ser	p.A211S	ENST00000375687	NM_015338.5	211	Gcc/Tcc																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57863371	57863371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	28	776	0	ENST00000228682.2:c.1466G>C	p.Gly489Ala	p.G489A	ENST00000228682	NM_005269.2	489	gGc/gCc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88680722	88680722	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	39	679	2	ENST00000360948.2:c.535del	p.Glu179ArgfsTer24	p.E179Rfs*24	ENST00000360948	NM_001012338.2	179	Gag/ag																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29462640	29462640	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	71	801	0	ENST00000389048.3:c.2261C>A	p.Ser754Tyr	p.S754Y	ENST00000389048	NM_004304.4	754	tCc/tAc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41536169	41536169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	38	641	1	ENST00000263253.7:c.1786G>T	p.Asp596Tyr	p.D596Y	ENST00000263253	NM_001429.3	596	Gat/Tat																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66218783	66218783	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	29	430	0	ENST00000273854.3:c.2275G>C	p.Gly759Arg	p.G759R	ENST00000273854	NM_004439.5	759	Ggc/Cgc																																												NEWRECORD																																		
TAP2	0	MSKCC	GRCh37	6	32797181	32797181	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	39	614	0	ENST00000374899.4:c.1928A>G	p.Gln643Arg	p.Q643R	ENST00000374899	NM_018833.2	643	cAg/cGg																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50444293	50444293	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	24	408	0	ENST00000331340.3:c.226del	p.Glu76LysfsTer17	p.E76Kfs*17	ENST00000331340	NM_006060.4	75	Ggg/gg																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	68942842	68942842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	59	690	0	ENST00000288368.4:c.654G>T	p.Met218Ile	p.M218I	ENST00000288368	NM_024870.2	218	atG/atT																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53223348	53223358	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGAGGGGGT	TCTGAGGGGGT	-			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	31	704	0	ENST00000375401.3:c.4001_4011del	p.Asp1334GlyfsTer9	p.D1334Gfs*9	ENST00000375401	NM_004187.3	1334	gACCCCCTCAGA/g																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70357441	70357441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020664-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	60	804	0	ENST00000374080.3:c.5782C>T	p.His1928Tyr	p.H1928Y	ENST00000374080		1928	Cat/Tat																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	455	1124	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	146	792	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0020636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	82	424	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	132	372	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52620522	52620523	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCAAATACAGA			P-0020636-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	167	794	0	ENST00000394830.3:c.3220_3230dup	p.Asn1078LeufsTer60	p.N1078Lfs*60	ENST00000394830	NM_018313.4	1077	gca/gcTCTGTATTTGCa																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0020683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	220	988	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020501-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	187	1123	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	1067	603	50	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			60	269	593	7	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579396	7579405	+	frameshift_variant	Frame_Shift_Del	DEL	GACAGAAGAT	GACAGAAGAT	-			P-0020673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	203	777	6	ENST00000269305.4:c.282_291del	p.Ser95LeufsTer25	p.S95Lfs*25	ENST00000269305	NM_001126112.2	94	tcATCTTCTGTC/tc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32968967	32968967	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	93	545	6	ENST00000380152.3:c.9398C>G	p.Ser3133Ter	p.S3133*	ENST00000380152		3133	tCa/tGa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	47	453	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87285754	87285754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	34	852	1	ENST00000277120.3:c.91G>A	p.Ala31Thr	p.A31T	ENST00000277120		31	Gcc/Acc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857275	9857275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	97	719	0	ENST00000330684.3:c.4126C>T	p.Arg1376Cys	p.R1376C	ENST00000330684	NM_001134407.1	1376	Cgc/Tgc																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	39074470	39074470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	31	591	0	ENST00000357387.3:c.10A>G	p.Ile4Val	p.I4V	ENST00000357387	NM_152756.3	4	Atc/Gtc																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65301852	65301852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	55	455	0	ENST00000342505.4:c.3187G>A	p.Asp1063Asn	p.D1063N	ENST00000342505	NM_002227.2	1063	Gac/Aac																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178096655	178096655	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	36	513	0	ENST00000397062.3:c.676T>A	p.Tyr226Asn	p.Y226N	ENST00000397062	NM_006164.4	226	Tat/Aat																																												NEWRECORD																																		
DROSHA	0	MSKCC	GRCh37	5	31495400	31495400	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020764-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	39	636	0	ENST00000344624.3:c.1748A>C	p.Asn583Thr	p.N583T	ENST00000344624		583	aAc/aCc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	243	743	8	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	143	545	2	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	128	435	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	58	490	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	159	371	0	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2225896	2225896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	253	793	0	ENST00000326181.6:c.1688A>G	p.Tyr563Cys	p.Y563C	ENST00000326181	NM_032271.2	563	tAc/tGc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15311616	15311616	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	21	106	0	ENST00000263388.2:c.101C>A	p.Ala34Glu	p.A34E	ENST00000263388	NM_000435.2	34	gCg/gAg																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131939628	131939628	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020661-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	51	408	0	ENST00000265335.6:c.2414T>A	p.Val805Asp	p.V805D	ENST00000265335		805	gTt/gAt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0020692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	140	606	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0020692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	140	606	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	369	894	2	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118377270	118377270	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	115	548	0	ENST00000534358.1:c.10663G>C	p.Gly3555Arg	p.G3555R	ENST00000534358	NM_005933.3	3555	Ggc/Cgc																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78867627	78867627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	256	982	2	ENST00000306801.3:c.2363G>A	p.Arg788His	p.R788H	ENST00000306801	NM_020761.2	788	cGc/cAc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2222455	2222455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	92	689	0	ENST00000398665.3:c.3287C>T	p.Thr1096Met	p.T1096M	ENST00000398665	NM_032482.2	1096	aCg/aTg																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54961503	54961503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	250	709	0	ENST00000312783.6:c.129G>C	p.Gln43His	p.Q43H	ENST00000312783	NM_198436.1	43	caG/caC																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187628376	187628376	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	385	999	0	ENST00000441802.2:c.2606C>A	p.Ser869Ter	p.S869*	ENST00000441802	NM_005245.3	869	tCa/tAa																																												NEWRECORD																																		
HIST1H3I	0	MSKCC	GRCh37	6	27839984	27839984	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	170	680	1	ENST00000328488.2:c.110A>T	p.Lys37Met	p.K37M	ENST00000328488	NM_003533.2	37	aAg/aTg																																												NEWRECORD																																		
CDK6	0	MSKCC	GRCh37	7	92355008	92355008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	163	506	1	ENST00000265734.4:c.469G>A	p.Gly157Arg	p.G157R	ENST00000265734	NM_001259.6	157	Gga/Aga																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101900201	101900201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			136	111	595	1	ENST00000374994.4:c.635G>T	p.Gly212Val	p.G212V	ENST00000374994	NM_004612.2	212	gGc/gTc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	24	400	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842383	68842384	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0020571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	46	715	0	ENST00000261769.5:c.445_446insAC	p.Leu149HisfsTer67	p.L149Hfs*67	ENST00000261769	NM_004360.3	148	-/CA																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151879364	151879364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	51	499	0	ENST00000262189.6:c.5581C>T	p.Arg1861Trp	p.R1861W	ENST00000262189	NM_170606.2	1861	Cgg/Tgg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937611	76937615	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTT	CTTTT	-			P-0020541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	95	265	0	ENST00000373344.5:c.3133_3137delAAAAG	p.Lys1045Ter	p.K1045*	ENST00000373344	NM_000489.3	1045	AAAAGt/t																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577448	64577448	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020541-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	162	793	0	ENST00000337652.1:c.134A>C	p.Glu45Ala	p.E45A	ENST00000337652	NM_130803.2	45	gAg/gCg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89390995	89390995	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144727411		P-0020586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	38	725	1	ENST00000336596.2:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000336596	NM_005233.5	354	cGg/cAg																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26970491	26970491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201577656		P-0020586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	17	454	0	ENST00000381527.3:c.860C>T	p.Thr287Met	p.T287M	ENST00000381527	NM_001260.1	287	aCg/aTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	184	832	1	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																													NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41385173	41385173	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	94	908	0	ENST00000373198.4:c.788G>C	p.Ser263Thr	p.S263T	ENST00000373198	NM_133170.3	263	aGc/aCc																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	69928301	69928301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020586-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			662	35	577	0	ENST00000352241.4:c.121C>T	p.Pro41Ser	p.P41S	ENST00000352241	NM_198159.2	41	Cct/Tct																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	40	390	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37665992	37665992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1293	74	554	0	ENST00000447079.4:c.2644C>T	p.Arg882Trp	p.R882W	ENST00000447079	NM_015083.1	882	Cgg/Tgg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577563	7577565	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0020622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	63	758	1	ENST00000269305.4:c.716_718del	p.Asn239del	p.N239del	ENST00000269305	NM_001126112.2	239	aACAgt/agt																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3900884	3900884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	35	749	0	ENST00000262367.5:c.212C>G	p.Ser71Trp	p.S71W	ENST00000262367	NM_004380.2	71	tCg/tGg																																												NEWRECORD																																		
CYLD	0	MSKCC	GRCh37	16	50830294	50830294	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	26	575	1	ENST00000398568.2:c.2737T>A	p.Leu913Met	p.L913M	ENST00000398568	NM_001042412.1	913	Ttg/Atg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	139	826	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	52	870	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261																																													NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67063633	67063633	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	104	616	1	ENST00000412916.2:c.82A>T	p.Lys28Ter	p.K28*	ENST00000412916		28	Aag/Tag																																												NEWRECORD																																		
GPS2	0	MSKCC	GRCh37	17	7217614	7217614	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	104	630	1	ENST00000380728.2:c.313C>T	p.Gln105Ter	p.Q105*	ENST00000380728		105	Cag/Tag																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12016558	12016558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	114	551	0	ENST00000353533.5:c.694C>A	p.Pro232Thr	p.P232T	ENST00000353533	NM_003010.3	232	Cct/Act																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134977858	134977858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020727-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	73	550	1	ENST00000398015.3:c.2851C>T	p.Leu951Phe	p.L951F	ENST00000398015	NM_004441.4	951	Ctc/Ttc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	57	969	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12038895	12038895	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	54	625	0	ENST00000396373.4:c.1188A>T	p.Arg396Ser	p.R396S	ENST00000396373	NM_001987.4	396	agA/agT																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23634324	23634324	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	125	1427	1	ENST00000261584.4:c.2962C>T	p.Gln988Ter	p.Q988*	ENST00000261584	NM_024675.3	988	Caa/Taa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			627	95	830	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87359975	87359975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			398	40	418	0	ENST00000277120.3:c.1283G>T	p.Arg428Leu	p.R428L	ENST00000277120		428	cGg/cTg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11188182	11188182	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			563	45	591	1	ENST00000361445.4:c.5912C>T	p.Ala1971Val	p.A1971V	ENST00000361445	NM_004958.3	1971	gCc/gTc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11317087	11317087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			693	40	790	0	ENST00000361445.4:c.407C>T	p.Ala136Val	p.A136V	ENST00000361445	NM_004958.3	136	gCa/gTa																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123276942	123276942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			505	56	498	1	ENST00000358487.5:c.975G>T	p.Glu325Asp	p.E325D	ENST00000358487	NM_000141.4	325	gaG/gaT																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119146836	119146836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	70	529	0	ENST00000264033.4:c.999G>T	p.Arg333Ser	p.R333S	ENST00000264033	NM_005188.3	333	agG/agT																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49432401	49432401	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			707	61	913	0	ENST00000301067.7:c.8738C>G	p.Pro2913Arg	p.P2913R	ENST00000301067	NM_003482.3	2913	cCc/cGc																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57858896	57858896	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			716	117	896	0	ENST00000228682.2:c.392C>A	p.Pro131Gln	p.P131Q	ENST00000228682	NM_005269.2	131	cCa/cAa																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28622419	28622419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			506	37	660	0	ENST00000241453.7:c.1198G>T	p.Gly400Ter	p.G400*	ENST00000241453	NM_004119.2	400	Gga/Tga																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88420286	88420286	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			525	73	699	0	ENST00000360948.2:c.2400C>G	p.Tyr800Ter	p.Y800*	ENST00000360948	NM_001012338.2	800	taC/taG																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39584416	39584416	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			471	59	487	0	ENST00000262039.4:c.1081G>T	p.Glu361Ter	p.E361*	ENST00000262039	NM_002647.2	361	Gag/Tag																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225338994	225338994	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			532	90	799	0	ENST00000264414.4:c.2275G>T	p.Glu759Ter	p.E759*	ENST00000264414	NM_003590.4	759	Gag/Tag																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47098952	47098952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			754	80	755	0	ENST00000409792.3:c.6322G>T	p.Val2108Leu	p.V2108L	ENST00000409792	NM_014159.6	2108	Gta/Tta																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47161937	47161937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			424	70	551	0	ENST00000409792.3:c.4189G>T	p.Asp1397Tyr	p.D1397Y	ENST00000409792	NM_014159.6	1397	Gat/Tat																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142278215	142278215	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			704	73	875	2	ENST00000350721.4:c.1610T>A	p.Leu537Ter	p.L537*	ENST00000350721	NM_001184.3	537	tTg/tAg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177686	56177686	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			440	81	491	0	ENST00000399503.3:c.2659G>T	p.Ala887Ser	p.A887S	ENST00000399503	NM_005921.1	887	Gca/Tca																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591249	67591257	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TGGTTGACT	TGGTTGACT	-			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			545	47	597	0	ENST00000274335.5:c.1747_1755del	p.Trp583_Thr585del	p.W583_T585del	ENST00000274335		583	TGGTTGACT/-																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508406	106508406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			347	39	352	0	ENST00000359195.3:c.400C>A	p.Gln134Lys	p.Q134K	ENST00000359195	NM_002649.2	134	Cag/Aag																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8486035	8486035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			524	50	737	0	ENST00000356435.5:c.2782G>C	p.Glu928Gln	p.E928Q	ENST00000356435		928	Gaa/Caa																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87475960	87475960	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			831	102	1070	0	ENST00000277120.3:c.1402T>A	p.Ser468Thr	p.S468T	ENST00000277120		468	Tca/Aca																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249372	110249372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	86	1213	1	ENST00000374672.4:c.1201G>A	p.Ala401Thr	p.A401T	ENST00000374672	NM_004235.4	401	Gcg/Acg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47044492	47044493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			671	89	840	0	ENST00000329236.7:c.1758dup	p.Gln587ThrfsTer8	p.Q587Tfs*8	ENST00000329236	NM_001204466.1	585	-/A																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70347807	70347807	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			698	44	790	0	ENST00000374080.3:c.3046C>A	p.Arg1016Ser	p.R1016S	ENST00000374080		1016	Cgc/Agc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76813088	76813089	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0020437-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			600	35	807	3	ENST00000373344.5:c.6532_6533delinsTT	p.Arg2178Leu	p.R2178L	ENST00000373344	NM_000489.3	2178	CGg/TTg																																												NEWRECORD																																		
CYLD	0	MSKCC	GRCh37	16	50813902	50813902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	346	772	4	ENST00000398568.2:c.1456C>T	p.Arg486Cys	p.R486C	ENST00000398568	NM_001042412.1	486	Cgt/Tgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579375	7579426	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCT	CTGGTAGGTTTTCTGGGAAGGGACAGAAGATGACAGGGGCCAGGAGGGGGCT	TCCTGGCCC			P-0020715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	228	865	5	ENST00000269305.4:c.261_312delinsGGGCCAGGA	p.Ala88GlyfsTer21	p.A88Gfs*21	ENST00000269305	NM_001126112.2	87	ccAGCCCCCTCCTGGCCCCTGTCATCTTCTGTCCCTTCCCAGAAAACCTACCAG/ccGGGCCAGGA																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52440372	52440372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	259	668	4	ENST00000460680.1:c.680G>T	p.Arg227Leu	p.R227L	ENST00000460680	NM_004656.3	227	cGc/cTc																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89390935	89390935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	100	580	0	ENST00000336596.2:c.1001C>T	p.Ser334Phe	p.S334F	ENST00000336596	NM_005233.5	334	tCt/tTt																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57754292	57754292	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	173	714	1	ENST00000274289.3:c.559A>G	p.Arg187Gly	p.R187G	ENST00000274289	NM_006622.3	187	Agg/Ggg																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5066677	5066677	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020715-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	82	718	0	ENST00000381652.3:c.1215-1G>A		p.X405_splice	ENST00000381652	NM_004972.3	405																																													NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0020550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	164	809	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29106013	29106054	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTCTATTTCTGTTTCAACATTGAGAGCTGGGTCCTTTGAT	ATTTCTATTTCTGTTTCAACATTGAGAGCTGGGTCCTTTGAT	-			P-0020550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	19	614	0	ENST00000328354.6:c.793-7_827del		p.X265_splice	ENST00000328354	NM_007194.3	265																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579315	7579316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	199	706	0	ENST00000269305.4:c.371dupG	p.Cys124TrpfsTer25	p.C124Wfs*25	ENST00000269305	NM_001126112.2	124	tgc/tgGc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139399258	139399258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	34	963	0	ENST00000277541.6:c.4885C>T	p.His1629Tyr	p.H1629Y	ENST00000277541	NM_017617.3	1629	Cac/Tac																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	765	722	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246011	46246011	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	45	346	0	ENST00000334344.6:c.4106del	p.Gly1369ValfsTer4	p.G1369Vfs*4	ENST00000334344	NM_152641.2	1369	Ggt/gt																																												NEWRECORD																																		
RYBP	0	MSKCC	GRCh37	3	72427699	72427699	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020572-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	68	439	2	ENST00000477973.2:c.789A>T	p.Glu264Val	p.E264V	ENST00000477973	NM_012234.5	264	gAa/gTa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	102	914	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11177096	11177096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	56	778	0	ENST00000361445.4:c.6981G>A	p.Met2327Ile	p.M2327I	ENST00000361445	NM_004958.3	2327	atG/atA																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	87	525	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	41	759	1	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	44	589	0	ENST00000269571.5:c.2305G>A	p.Asp769Asn	p.D769N	ENST00000269571		769	Gac/Aac																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114799803	114799803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020681-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	65	844	2	ENST00000543371.1:c.470C>T	p.Pro157Leu	p.P157L	ENST00000543371	NM_001198531.1	157	cCa/cTa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			900	46	939	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	103	961	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			933	116	1050	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106342	27106342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	49	822	0	ENST00000324856.7:c.5953T>C	p.Ser1985Pro	p.S1985P	ENST00000324856	NM_006015.4	1985	Tcc/Ccc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5223299	5223299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	53	1126	0	ENST00000357368.4:c.2504G>A	p.Arg835His	p.R835H	ENST00000357368	NM_002850.3	835	cGc/cAc																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33289145	33289145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020548-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	78	830	0	ENST00000374542.5:c.407C>G	p.Ala136Gly	p.A136G	ENST00000374542	NM_001141970.1	136	gCc/gGc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0018913-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			166	680	1016	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48951099	48951100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0018913-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			52	193	637	0	ENST00000267163.4:c.1265_1266dup	p.Gly423Ter	p.G423*	ENST00000267163	NM_000321.2	421	gat/gATat																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	240465	240471	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGTTTTA	TGTTTTA	-			P-0018913-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			184	40	359	0	ENST00000264932.6:c.1433-8_1433-2del		p.X478_splice	ENST00000264932	NM_004168.2	478																																													NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	147	639	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	202	827	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	190	621	1	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23646867	23646867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	161	850	0	ENST00000261584.4:c.1000T>C	p.Tyr334His	p.Y334H	ENST00000261584	NM_024675.3	334	Tac/Cac																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	268	894	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178097304	178097304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	107	467	5	ENST00000397062.3:c.410C>T	p.Ser137Leu	p.S137L	ENST00000397062	NM_006164.4	137	tCg/tTg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46230691	46230691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	102	629	2	ENST00000334344.6:c.940C>T	p.Arg314Cys	p.R314C	ENST00000334344	NM_152641.2	314	Cgt/Tgt																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164543	36164543	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	168	623	0	ENST00000300305.3:c.1332del	p.Ser445AlafsTer149	p.S445Afs*149	ENST00000300305		444	ccC/cc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	86	387	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175945	112175945	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	84	336	0	ENST00000257430.4:c.4654G>T	p.Glu1552Ter	p.E1552*	ENST00000257430	NM_000038.5	1552	Gag/Tag																																												NEWRECORD																																		
CSF1R	1436	MSKCC	GRCh37	5	149456893	149456893	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs3829986		P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	196	735	0	ENST00000286301.3:c.835G>A	p.Val279Met	p.V279M	ENST00000286301	NM_005211.3	279	Gtg/Atg																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149982884	149982884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	109	635	1	ENST00000253339.5:c.3374G>A	p.Arg1125His	p.R1125H	ENST00000253339		1125	cGc/cAc																																												NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	138	722	0	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89690846	89690846	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	62	544	0	ENST00000371953.3:c.253G>T	p.Val85Phe	p.V85F	ENST00000371953	NM_000314.4	85	Gtt/Ttt																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2962933	2962933	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs78443994		P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			752	224	913	5	ENST00000396946.4:c.1975G>A	p.Val659Met	p.V659M	ENST00000396946	NM_032415.4	659	Gtg/Atg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	206	486	1	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66782061	66782062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	142	583	1	ENST00000307102.5:c.1034dup	p.Asn345LysfsTer21	p.N345Kfs*21	ENST00000307102	NM_002755.3	343	ata/atAa																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48028049	48028049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	89	393	0	ENST00000234420.5:c.2927G>A	p.Arg976His	p.R976H	ENST00000234420	NM_000179.2	976	cGt/cAt																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15276861	15276861	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	125	782	2	ENST00000263388.2:c.5404delG	p.Ala1802LeufsTer23	p.A1802Lfs*23	ENST00000263388	NM_000435.2	1802	Gct/ct																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	152	636	1	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3779076	3779076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	60	753	2	ENST00000262367.5:c.5972C>T	p.Pro1991Leu	p.P1991L	ENST00000262367	NM_004380.2	1991	cCg/cTg																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111885930	111885930	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138410505		P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	127	655	2	ENST00000341259.2:c.1552C>T	p.Arg518Ter	p.R518*	ENST00000341259	NM_005475.2	518	Cga/Tga																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67588972	67588972	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	73	489	0	ENST00000274335.5:c.1067delT	p.Leu356TrpfsTer17	p.L356Wfs*17	ENST00000274335		355	Ttt/tt																																												NEWRECORD																																		
PRKAR1A	0	MSKCC	GRCh37	17	66519896	66519896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	97	687	2	ENST00000358598.2:c.379G>A	p.Ala127Thr	p.A127T	ENST00000358598	NM_212471.2	127	Gct/Act																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95596408	95596408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	24	531	0	ENST00000343455.3:c.560G>A	p.Arg187Gln	p.R187Q	ENST00000343455	NM_177438.2	187	cGa/cAa																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	354308	354308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	157	702	2	ENST00000262320.3:c.1250G>A	p.Arg417His	p.R417H	ENST00000262320	NM_003502.3	417	cGc/cAc																																												NEWRECORD																																		
SESN2	0	MSKCC	GRCh37	1	28598900	28598900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	210	800	0	ENST00000253063.3:c.460G>A	p.Glu154Lys	p.E154K	ENST00000253063	NM_031459.4	154	Gag/Aag																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24159112	24159112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	128	578	0	ENST00000263121.7:c.784G>A	p.Val262Ile	p.V262I	ENST00000263121	NM_003073.3	262	Gtc/Atc																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50905312	50905312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	135	910	0	ENST00000440232.2:c.520C>T	p.Arg174Trp	p.R174W	ENST00000440232	NM_002691.3	174	Cgg/Tgg																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1611717	1611717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	204	816	0	ENST00000344749.5:c.1945G>A	p.Gly649Arg	p.G649R	ENST00000344749	NM_001136139.2	649	Ggg/Agg																																												NEWRECORD																																		
CSDE1	0	MSKCC	GRCh37	1	115266570	115266570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	148	794	0	ENST00000438362.2:c.1945C>T	p.Arg649Cys	p.R649C	ENST00000438362	NM_001242891.1	649	Cgc/Tgc																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30129087	30129087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	166	657	0	ENST00000263025.4:c.679G>A	p.Asp227Asn	p.D227N	ENST00000263025	NM_002746.2	227	Gac/Aac																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925402	114925402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs768101780		P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	164	795	0	ENST00000543371.1:c.1485del	p.Ser496ProfsTer5	p.S496Pfs*5	ENST00000543371	NM_001198531.1	494	Ccc/cc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258440	16258440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	167	712	1	ENST00000375759.3:c.5705G>A	p.Arg1902Gln	p.R1902Q	ENST00000375759	NM_015001.2	1902	cGg/cAg																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46739853	46739853	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	183	633	2	ENST00000371975.4:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000371975	NM_003579.3	552	Cga/Tga																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	175957496	175957496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	124	751	0	ENST00000367669.3:c.1900C>T	p.Arg634Cys	p.R634C	ENST00000367669	NM_022457.5	634	Cgt/Tgt																																												NEWRECORD																																		
ELF3	0	MSKCC	GRCh37	1	201984380	201984380	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	189	798	1	ENST00000359651.3:c.1045C>T	p.Arg349Ter	p.R349*	ENST00000359651		349	Cga/Tga																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711906	89711906	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	143	689	0	ENST00000371953.3:c.524T>C	p.Val175Ala	p.V175A	ENST00000371953	NM_000314.4	175	gTg/gCg																																												NEWRECORD																																		
INPPL1	0	MSKCC	GRCh37	11	71941474	71941474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	235	897	3	ENST00000298229.2:c.1159C>T	p.Arg387Trp	p.R387W	ENST00000298229	NM_001567.3	387	Cgg/Tgg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108121562	108121562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	133	664	2	ENST00000278616.4:c.1370G>A	p.Arg457Gln	p.R457Q	ENST00000278616	NM_000051.3	457	cGa/cAa																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50492783	50492783	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	136	681	0	ENST00000394963.4:c.1548G>T	p.Ter516TyrextTer23	p.*516Yext*23	ENST00000394963	NM_003076.4	516	taG/taT																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133210807	133210807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	189	793	0	ENST00000320574.5:c.5969C>T	p.Ala1990Val	p.A1990V	ENST00000320574	NM_006231.2	1990	gCc/gTc																																												NEWRECORD																																		
RAD51	0	MSKCC	GRCh37	15	41023251	41023251	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	58	763	0	ENST00000267868.3:c.897-2A>G		p.X299_splice	ENST00000267868	NM_002875.4	299																																													NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88669605	88669605	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	29	401	2	ENST00000360948.2:c.1294-1G>T		p.X432_splice	ENST00000360948	NM_001012338.2	432																																													NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99434737	99434737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	224	704	2	ENST00000268035.6:c.824G>A	p.Arg275His	p.R275H	ENST00000268035	NM_000875.3	275	cGc/cAc																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2223920	2223920	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	163	639	0	ENST00000326181.6:c.1136-2A>G		p.X379_splice	ENST00000326181	NM_032271.2	379																																													NEWRECORD																																		
SLX4	0	MSKCC	GRCh37	16	3640169	3640169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	259	1043	3	ENST00000294008.3:c.3470C>T	p.Ser1157Leu	p.S1157L	ENST00000294008	NM_032444.2	1157	tCg/tTg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3777960	3777960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	269	1013	1	ENST00000262367.5:c.7088C>T	p.Pro2363Leu	p.P2363L	ENST00000262367	NM_004380.2	2363	cCg/cTg																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14028124	14028124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	29	641	0	ENST00000311895.7:c.1178C>T	p.Ala393Val	p.A393V	ENST00000311895	NM_005236.2	393	gCa/gTa																																												NEWRECORD																																		
CYLD	0	MSKCC	GRCh37	16	50828334	50828334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	120	513	3	ENST00000398568.2:c.2672G>A	p.Arg891Gln	p.R891Q	ENST00000398568	NM_001042412.1	891	cGg/cAg																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37619187	37619187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	149	669	0	ENST00000447079.4:c.863G>A	p.Ser288Asn	p.S288N	ENST00000447079	NM_015083.1	288	aGc/aAc																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37866411	37866411	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	56	756	0	ENST00000269571.5:c.716A>G	p.Gln239Arg	p.Q239R	ENST00000269571		239	cAg/cGg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119989	70119990	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TA			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	68	257	1	ENST00000245479.2:c.991_992delinsTA	p.Ala331Ter	p.A331*	ENST00000245479	NM_000346.3	331	GCg/TAg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15291627	15291627	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	216	886	0	ENST00000263388.2:c.3007T>C	p.Trp1003Arg	p.W1003R	ENST00000263388	NM_000435.2	1003	Tgg/Cgg																																												NEWRECORD																																		
BABAM1	0	MSKCC	GRCh37	19	17384765	17384765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	204	772	3	ENST00000359435.4:c.397C>T	p.Arg133Trp	p.R133W	ENST00000359435	NM_001033549.1	133	Cgg/Tgg																																												NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36214822	36214822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	166	768	0	ENST00000222270.7:c.3248G>A	p.Arg1083Gln	p.R1083Q	ENST00000222270	NM_014727.1	1083	cGa/cAa																																												NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36223866	36223866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	222	799	1	ENST00000222270.7:c.6416C>T	p.Ala2139Val	p.A2139V	ENST00000222270	NM_014727.1	2139	gCg/gTg																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40748545	40748545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	210	831	1	ENST00000392038.2:c.337C>T	p.Arg113Trp	p.R113W	ENST00000392038	NM_001626.4	113	Cgg/Tgg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30142956	30142956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	46	931	2	ENST00000389048.3:c.570G>A	p.Met190Ile	p.M190I	ENST00000389048	NM_004304.4	190	atG/atA																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111907671	111907671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	130	540	0	ENST00000393256.3:c.445G>T	p.Ala149Ser	p.A149S	ENST00000393256	NM_006538.4	149	Gcc/Tcc																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24159016	24159016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	127	825	1	ENST00000263121.7:c.688C>A	p.Pro230Thr	p.P230T	ENST00000263121	NM_003073.3	230	Ccg/Acg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47155382	47155382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	149	663	1	ENST00000409792.3:c.4699G>A	p.Ala1567Thr	p.A1567T	ENST00000409792	NM_014159.6	1567	Gcc/Acc																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71096111	71096111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	32	390	1	ENST00000318789.4:c.646C>A	p.Leu216Ile	p.L216I	ENST00000318789	NM_032682.5	216	Ctt/Att																																												NEWRECORD																																		
PPP4R2	0	MSKCC	GRCh37	3	73114752	73114752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	43	248	0	ENST00000356692.5:c.1133G>A	p.Arg378His	p.R378H	ENST00000356692		378	cGt/cAt																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128205181	128205181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	184	806	2	ENST00000341105.2:c.260C>A	p.Pro87Gln	p.P87Q	ENST00000341105	NM_032638.4	87	cCa/cAa																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149439284	149439284	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	172	740	0	ENST00000286301.3:c.2111T>C	p.Leu704Pro	p.L704P	ENST00000286301	NM_005211.3	704	cTc/cCc																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149499617	149499617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	177	741	0	ENST00000261799.4:c.2656G>A	p.Val886Met	p.V886M	ENST00000261799	NM_002609.3	886	Gtg/Atg																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180041127	180041127	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	181	1220	1	ENST00000261937.6:c.3272A>G	p.Tyr1091Cys	p.Y1091C	ENST00000261937	NM_182925.4	1091	tAc/tGc																																												NEWRECORD																																		
HLA-B	0	MSKCC	GRCh37	6	31323288	31323288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	14	154	0	ENST00000412585.2:c.701C>A	p.Pro234His	p.P234H	ENST00000412585	NM_005514.6	234	cCt/cAt																																												NEWRECORD																																		
STK19	0	MSKCC	GRCh37	6	31948473	31948473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142791776		P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	87	458	0	ENST00000375331.2:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000375331	NM_004197.1	315	cGg/cAg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32165280	32165280	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	218	902	1	ENST00000375023.3:c.4848G>A	p.Trp1616Ter	p.W1616*	ENST00000375023	NM_004557.3	1616	tgG/tgA																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32170103	32170103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	178	795	4	ENST00000375023.3:c.3505C>T	p.Arg1169Trp	p.R1169W	ENST00000375023	NM_004557.3	1169	Cgg/Tgg																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138202232	138202232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	108	572	1	ENST00000237289.4:c.2149G>A	p.Ala717Thr	p.A717T	ENST00000237289	NM_001270507.1	717	Gcc/Acc																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	68934320	68934320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	112	875	0	ENST00000288368.4:c.386C>T	p.Ala129Val	p.A129V	ENST00000288368	NM_024870.2	129	gCa/gTa																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	68989706	68989706	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	126	722	0	ENST00000288368.4:c.1642+2T>C		p.X548_splice	ENST00000288368	NM_024870.2	548																																													NEWRECORD																																		
PRDM14	0	MSKCC	GRCh37	8	70981780	70981780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	214	893	0	ENST00000276594.2:c.316C>T	p.His106Tyr	p.H106Y	ENST00000276594	NM_024504.3	106	Cac/Tac																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76849283	76849283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020689-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	34	384	0	ENST00000373344.5:c.5993C>A	p.Ala1998Asp	p.A1998D	ENST00000373344	NM_000489.3	1998	gCt/gAt																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020725-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	41	733	2	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	95	680	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	44	330	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	78	1004	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0020695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	125	738	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																												NEWRECORD																																		
TP53BP1	0	MSKCC	GRCh37	15	43700201	43700201	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	76	841	0	ENST00000382044.4:c.5686A>T	p.Ile1896Phe	p.I1896F	ENST00000382044	NM_001141980.1	1896	Atc/Ttc																																												NEWRECORD																																		
CYLD	0	MSKCC	GRCh37	16	50810162	50810162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	204	888	0	ENST00000398568.2:c.986C>G	p.Ser329Cys	p.S329C	ENST00000398568	NM_001042412.1	329	tCc/tGc																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38950751	38950751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	96	610	0	ENST00000357387.3:c.3199G>A	p.Asp1067Asn	p.D1067N	ENST00000357387	NM_152756.3	1067	Gat/Aat																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	54	674	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	547	924	2	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0020678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	2352	675	6	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	28	1041	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	37	936	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94128963	94128963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	28	614	0	ENST00000369303.4:c.97G>T	p.Val33Leu	p.V33L	ENST00000369303	NM_004440.3	33	Gta/Tta																																												NEWRECORD																																		
MCL1	0	MSKCC	GRCh37	1	150551324	150551324	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	35	1304	1	ENST00000369026.2:c.683T>A	p.Phe228Tyr	p.F228Y	ENST00000369026	NM_021960.4	228	tTc/tAc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28963999	28963999	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	17	582	0	ENST00000282397.4:c.1903G>T	p.Ala635Ser	p.A635S	ENST00000282397	NM_002019.4	635	Gcc/Tcc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89357126	89357129	+	frameshift_variant	Frame_Shift_Del	DEL	TCTC	TCTC	-			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	34	1089	0	ENST00000301030.4:c.505_508del	p.Glu169ProfsTer58	p.E169Pfs*58	ENST00000301030	NM_001256183.1	169	GAGAcc/cc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16024479	16024479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	23	658	0	ENST00000268712.3:c.1739G>T	p.Arg580Leu	p.R580L	ENST00000268712	NM_006311.3	580	cGc/cTc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29592321	29592321	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	22	814	0	ENST00000358273.4:c.4799A>G	p.Lys1600Arg	p.K1600R	ENST00000358273	NM_001042492.2	1600	aAa/aGa																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602617	10602617	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	23	1107	0	ENST00000171111.5:c.961del	p.Ala321ArgfsTer7	p.A321Rfs*7	ENST00000171111	NM_203500.1	321	Gcg/cg																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637891	176637891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	35	834	0	ENST00000439151.2:c.2491G>T	p.Gly831Trp	p.G831W	ENST00000439151	NM_022455.4	831	Ggg/Tgg																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138200081	138200081	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020543-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	31	625	0	ENST00000237289.4:c.1499A>G	p.Asn500Ser	p.N500S	ENST00000237289	NM_001270507.1	500	aAc/aGc																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	79	492	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100920785	100920785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	63	574	0	ENST00000325455.5:c.2363G>T	p.Arg788Leu	p.R788L	ENST00000325455	NM_001202474.3	788	cGg/cTg																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100933454	100933455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	37	426	0	ENST00000325455.5:c.1935dup	p.Arg646GlnfsTer20	p.R646Qfs*20	ENST00000325455	NM_001202474.3	645	-/C																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44913111	44913113	+	frameshift_variant	Frame_Shift_Del	DEL	AGC	AGC	TT			P-0020669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	70	849	0	ENST00000377967.4:c.786_788delinsTT	p.Lys262AsnfsTer63	p.K262Nfs*63	ENST00000377967	NM_021140.2	262	aaAGCc/aaTTc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70338669	70338669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020669-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	117	845	1	ENST00000374080.3:c.65C>T	p.Pro22Leu	p.P22L	ENST00000374080		22	cCc/cTc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	1028	745	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	310	557	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	310	557	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	310	557	0	ENST00000304494.5:c.247C>G	p.His83Asp	p.H83D	ENST00000304494	NM_000077.4	83	Cac/Gac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0020763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	264	614	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																													NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2977591	2977591	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020763-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	359	841	0	ENST00000396946.4:c.1093A>G	p.Met365Val	p.M365V	ENST00000396946	NM_032415.4	365	Atg/Gtg																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49431028	49431028	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	139	995	0	ENST00000301067.7:c.10111C>T	p.Gln3371Ter	p.Q3371*	ENST00000301067	NM_003482.3	3371	Cag/Tag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44870241	44870241	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0020581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			89	203	483	0	ENST00000377967.4:c.420C>G	p.Tyr140Ter	p.Y140*	ENST00000377967	NM_021140.2	140	taC/taG																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	114	815	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	39	796	1	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67063344	67063344	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	71	834	0	ENST00000412916.2:c.34T>A	p.Phe12Ile	p.F12I	ENST00000412916		12	Ttc/Atc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16062088	16062088	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	38	709	0	ENST00000268712.3:c.718T>G	p.Tyr240Asp	p.Y240D	ENST00000268712	NM_006311.3	240	Tat/Gat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577514	7577515	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCA			P-0020568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	242	793	0	ENST00000269305.4:c.766_767insTGA	p.Ile255_Thr256insMet	p.I255_T256insM	ENST00000269305	NM_001126112.2	256	aca/aTGAca																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55130003	55130003	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020568-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	81	714	0	ENST00000257290.5:c.537T>A	p.Asn179Lys	p.N179K	ENST00000257290	NM_006206.4	179	aaT/aaA																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	57	901	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579538	7579539	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0020552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	359	1161	0	ENST00000269305.4:c.148_149del	p.Ile50Ter	p.I50*	ENST00000269305	NM_001126112.2	50	ATt/t																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10277337	10277337	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	378	1167	0	ENST00000340748.4:c.780G>C	p.Glu260Asp	p.E260D	ENST00000340748		260	gaG/gaC																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187629575	187629575	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	32	862	0	ENST00000441802.2:c.1407A>T	p.Lys469Asn	p.K469N	ENST00000441802	NM_005245.3	469	aaA/aaT																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131944886	131944886	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020705-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	19	429	0	ENST00000265335.6:c.2907A>T	p.Lys969Asn	p.K969N	ENST00000265335		969	aaA/aaT																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	29	521	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	9	548	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	8	525	1	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020734-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	78	992	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc																																												NEWRECORD																																		
CYLD	0	MSKCC	GRCh37	16	50811826	50811826	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	431	810	1	ENST00000398568.2:c.1103C>A	p.Ser368Ter	p.S368*	ENST00000398568	NM_001042412.1	368	tCa/tAa																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41243712	41243712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	166	789	1	ENST00000357654.3:c.3836C>A	p.Ala1279Glu	p.A1279E	ENST00000357654	NM_007294.3	1279	gCa/gAa																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131894981	131894983	+	frameshift_variant	Frame_Shift_Del	DEL	CAT	CAT	A			P-0020587-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	158	482	0	ENST00000265335.6:c.135_137delinsA	p.Ile46Ter	p.I46*	ENST00000265335		45	atCATt/atAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	105	661	1	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																												NEWRECORD																																		
MSI1	0	MSKCC	GRCh37	12	120795681	120795681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020617-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	87	598	0	ENST00000257552.2:c.472G>C	p.Glu158Gln	p.E158Q	ENST00000257552	NM_002442.3	158	Gag/Cag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	137	1149	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	11	154	0	ENST00000331920.6:c.49_51delGGC	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																												NEWRECORD																																		
ELF3	0	MSKCC	GRCh37	1	201984428	201984428	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1164	137	1064	0	ENST00000359651.3:c.1093G>T	p.Glu365Ter	p.E365*	ENST00000359651		365	Gag/Tag																																												NEWRECORD																																		
SUFU	0	MSKCC	GRCh37	10	104352340	104352340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	88	816	0	ENST00000369902.3:c.456G>C	p.Glu152Asp	p.E152D	ENST00000369902	NM_016169.3	152	gaG/gaC																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42003191	42003191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	268	1138	1	ENST00000219905.7:c.2728C>T	p.Arg910Ter	p.R910*	ENST00000219905	NM_001164273.1	910	Cga/Tga																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42026720	42026720	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			996	111	958	2	ENST00000219905.7:c.3844G>T	p.Glu1282Ter	p.E1282*	ENST00000219905	NM_001164273.1	1282	Gaa/Taa																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220666	1220670	+	frameshift_variant	Frame_Shift_Del	DEL	GGACA	GGACA	-			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1544	209	1878	0	ENST00000326873.7:c.684_688del	p.Asp229LeufsTer35	p.D229Lfs*35	ENST00000326873	NM_000455.4	228	ctGGACAcc/ctcc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602922	10602922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1412	232	1658	2	ENST00000171111.5:c.656A>T	p.Glu219Val	p.E219V	ENST00000171111	NM_203500.1	219	gAg/gTg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11144123	11144123	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	187	1564	0	ENST00000344626.4:c.3704A>T	p.Asp1235Val	p.D1235V	ENST00000344626	NM_003072.3	1235	gAc/gTc																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152420000	152420000	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs146924427		P-0020497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	112	1023	0	ENST00000206249.3:c.1687A>G	p.Thr563Ala	p.T563A	ENST00000206249	NM_000125.3	563	Acg/Gcg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	1003	979	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0020651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	189	862	0	ENST00000269305.4:c.560-1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																													NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103514475	103514475	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	43	332	0	ENST00000355739.4:c.976T>C	p.Cys326Arg	p.C326R	ENST00000355739	NM_000123.3	326	Tgt/Cgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			280	443	743	2	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118352634	118352634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	153	571	0	ENST00000534358.1:c.3839G>T	p.Gly1280Val	p.G1280V	ENST00000534358	NM_005933.3	1280	gGg/gTg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3779826	3779826	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	403	939	0	ENST00000262367.5:c.5222A>T	p.Lys1741Met	p.K1741M	ENST00000262367	NM_004380.2	1741	aAg/aTg																																												NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36222932	36222932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	251	1084	0	ENST00000222270.7:c.5561C>T	p.Pro1854Leu	p.P1854L	ENST00000222270	NM_014727.1	1854	cCt/cTt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152415585	152415585	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020760-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	454	800	0	ENST00000206249.3:c.1435C>G	p.Leu479Val	p.L479V	ENST00000206249	NM_000125.3	479	Ctg/Gtg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	141	870	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	207	1038	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89690819	89690820	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0020716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	111	708	0	ENST00000371953.3:c.227_228del	p.Tyr76Ter	p.Y76*	ENST00000371953	NM_000314.4	76	TAt/t																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713853	30713853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	142	914	2	ENST00000359013.4:c.1253G>A	p.Cys418Tyr	p.C418Y	ENST00000359013	NM_001024847.2	418	tGc/tAc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29683551	29683557	+	frameshift_variant	Frame_Shift_Del	DEL	CACAACA	CACAACA	-			P-0020716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	81	587	0	ENST00000358273.4:c.7690_7696del	p.Thr2564ProfsTer4	p.T2564Pfs*4	ENST00000358273	NM_001042492.2	2563	atCACAACA/at																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			983	69	863	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589599	67589601	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0020735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	33	524	0	ENST00000274335.5:c.1362_1364del	p.Gln455del	p.Q455del	ENST00000274335		454	acTCAg/acg																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	109	771	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106519	27106523	+	frameshift_variant	Frame_Shift_Del	DEL	AACAA	AACAA	-			P-0020704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	107	1034	0	ENST00000324856.7:c.6131_6135del	p.Asn2044SerfsTer53	p.N2044Sfs*53	ENST00000324856	NM_006015.4	2044	AACAAa/a																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44922894	44922915	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAAGTACAGACACTATTTTG	GGGAAGTACAGACACTATTTTG	-			P-0020704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			126	78	334	0	ENST00000377967.4:c.1755_1776del	p.Gly586Ter	p.G586*	ENST00000377967	NM_021140.2	585	ctGGGAAGTACAGACACTATTTTG/ct																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578179	7578179	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	157	1059	1	ENST00000269305.4:c.670G>T	p.Glu224Ter	p.E224*	ENST00000269305	NM_001126112.2	224	Gag/Tag																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133250211	133250211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	133	1039	1	ENST00000320574.5:c.1309G>A	p.Val437Met	p.V437M	ENST00000320574	NM_006231.2	437	Gtg/Atg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220703	1220703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	143	1063	0	ENST00000326873.7:c.721G>C	p.Ala241Pro	p.A241P	ENST00000326873	NM_000455.4	241	Gct/Cct																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	432362	432362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			119	32	319	1	ENST00000399788.2:c.2161C>A	p.Pro721Thr	p.P721T	ENST00000399788	NM_001042603.1	721	Cca/Aca																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49425771	49425771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	103	823	0	ENST00000301067.7:c.12717G>T	p.Gln4239His	p.Q4239H	ENST00000301067	NM_003482.3	4239	caG/caT																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2105513	2105513	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	121	746	0	ENST00000219476.3:c.592A>T	p.Met198Leu	p.M198L	ENST00000219476	NM_000548.3	198	Atg/Ttg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41306800	41306800	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020570-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	50	306	0	ENST00000373198.4:c.860-1G>A		p.X287_splice	ENST00000373198	NM_133170.3	287																																													NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110436297	110436302	+	inframe_deletion	In_Frame_Del	DEL	CGGCGG	CGGCGG	-			P-0020693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	71	270	0	ENST00000375856.3:c.2099_2104del	p.Ala700_Ala701del	p.A700_A701del	ENST00000375856	NM_003749.2	700	gCCGCCGtg/gtg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117820	70117821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCTCCT			P-0020693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	51	710	0	ENST00000245479.2:c.294_295insTGGCTCC	p.Ser99TrpfsTer155	p.S99Wfs*155	ENST00000245479	NM_000346.3	96	-/GGCTCCT																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142274778	142274780	+	missense_variant	Missense_Mutation	ONP	GAA	GAA	TTT			P-0020693-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	36	759	0	ENST00000350721.4:c.2280_2282delinsAAA	p.Ser761Asn	p.S761N	ENST00000350721	NM_001184.3	760	gcTTCt/gcAAAt																																												NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063717	67063718	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0020663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			190	30	283	0	ENST00000412916.2:c.165+2dup		p.X55_splice	ENST00000412916		55																																													NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68847300	68847301	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0020663-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	61	721	0	ENST00000261769.5:c.1223dup	p.Trp409ValfsTer10	p.W409Vfs*10	ENST00000261769	NM_004360.3	408	gcg/gCcg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	226	995	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	62	656	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2983911	2983911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	268	1204	1	ENST00000396946.4:c.619C>T	p.Arg207Cys	p.R207C	ENST00000396946	NM_032415.4	207	Cgc/Tgc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43601893	43601893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	170	901	2	ENST00000355710.3:c.937C>T	p.Arg313Trp	p.R313W	ENST00000355710	NM_020975.4	313	Cgg/Tgg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578369	7578369	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	288	714	0	ENST00000269305.4:c.559+2T>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																													NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118380795	118380795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	93	710	3	ENST00000534358.1:c.11033G>A	p.Ser3678Asn	p.S3678N	ENST00000534358	NM_005933.3	3678	aGt/aAt																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88576096	88576096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	122	1010	0	ENST00000360948.2:c.1577C>T	p.Pro526Leu	p.P526L	ENST00000360948	NM_001012338.2	526	cCg/cTg																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128829165	128829165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			104	91	91	0	ENST00000249373.3:c.173C>T	p.Pro58Leu	p.P58L	ENST00000249373	NM_005631.4	58	cCg/cTg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020575-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	15	686	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0020500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	240	1396	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	168	999	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	28	402	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0020500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	160	640	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114903763	114903763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020500-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	314	969	0	ENST00000543371.1:c.767C>T	p.Pro256Leu	p.P256L	ENST00000543371	NM_001198531.1	256	cCg/cTg																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577427	64577433	+	frameshift_variant	Frame_Shift_Del	DEL	CGGTTGA	CGGTTGA	-			P-0020684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	358	928	0	ENST00000337652.1:c.149_155del	p.Val50AlafsTer67	p.V50Afs*67	ENST00000337652	NM_130803.2	50	gTCAACCGc/gc																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94219152	94219152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	413	858	0	ENST00000323929.3:c.252G>A	p.Met84Ile	p.M84I	ENST00000323929	NM_005591.3	84	atG/atA																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47158197	47158197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	378	920	1	ENST00000409792.3:c.4502G>A	p.Cys1501Tyr	p.C1501Y	ENST00000409792	NM_014159.6	1501	tGt/tAt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	192	720	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	209	637	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80412493	80412493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	228	618	0	ENST00000286548.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000286548	NM_002072.3	183	cGa/cAa																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189582120	189582120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	103	734	0	ENST00000264731.3:c.679G>A	p.Ala227Thr	p.A227T	ENST00000264731	NM_003722.4	227	Gcc/Acc																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652020	36652020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	398	1044	1	ENST00000244741.5:c.142C>T	p.Arg48Ter	p.R48*	ENST00000244741	NM_000389.4	48	Cga/Tga																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5229617	5229617	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064295		P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			58	60	162	1	ENST00000357368.4:c.2234C>T	p.Ala745Val	p.A745V	ENST00000357368	NM_002850.3	745	gCg/gTg																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1803121	1803121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	297	1036	0	ENST00000260795.2:c.473G>A	p.Arg158Gln	p.R158Q	ENST00000260795		158	cGg/cAg																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17127262	17127262	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200168437		P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			288	259	813	0	ENST00000285071.4:c.592G>A	p.Asp198Asn	p.D198N	ENST00000285071	NM_144997.5	198	Gat/Aat																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158626924	158626924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	35	795	0	ENST00000263640.3:c.746C>T	p.Thr249Met	p.T249M	ENST00000263640	NM_001105.4	249	aCg/aTg																																												NEWRECORD																																		
BAP1	8314	MSKCC	GRCh37	3	52442567	52442567	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			26	314	655	1	ENST00000460680.1:c.178C>T	p.Arg60Ter	p.R60*	ENST00000460680	NM_004656.3	60	Cga/Tga																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133253953	133253953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	34	933	0	ENST00000320574.5:c.797G>A	p.Arg266Gln	p.R266Q	ENST00000320574	NM_006231.2	266	cGa/cAa																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46736426	46736426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150138364		P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	301	818	0	ENST00000371975.4:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000371975	NM_003579.3	380	Cgg/Tgg																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64138082	64138082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	387	1067	2	ENST00000334205.4:c.2005C>T	p.Arg669Trp	p.R669W	ENST00000334205	NM_003942.2	669	Cgg/Tgg																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121416861	121416861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	310	1252	4	ENST00000257555.6:c.290C>T	p.Ala97Val	p.A97V	ENST00000257555		97	gCg/gTg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2115581	2115581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			349	308	1144	0	ENST00000219476.3:c.1661C>T	p.Ser554Leu	p.S554L	ENST00000219476	NM_000548.3	554	tCg/tTg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828015	72828015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	301	1161	0	ENST00000268489.5:c.8566G>A	p.Asp2856Asn	p.D2856N	ENST00000268489	NM_006885.3	2856	Gac/Aac																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806242	1806242	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	271	984	0	ENST00000260795.2:c.1261C>T	p.Arg421Ter	p.R421*	ENST00000260795		421	Cga/Tga																																												NEWRECORD																																		
TAP1	0	MSKCC	GRCh37	6	32818275	32818275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	323	851	0	ENST00000354258.4:c.1250G>A	p.Arg417Gln	p.R417Q	ENST00000354258	NM_000593.5	417	cGg/cAg																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508236	106508236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	141	470	0	ENST00000359195.3:c.230G>A	p.Arg77Gln	p.R77Q	ENST00000359195	NM_002649.2	77	cGa/cAa																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135781403	135781403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			314	251	865	0	ENST00000298552.3:c.1562C>T	p.Ser521Leu	p.S521L	ENST00000298552	NM_001162426.1	521	tCg/tTg																																												NEWRECORD																																		
FAM58A	0	MSKCC	GRCh37	X	152860121	152860121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	122	985	0	ENST00000406277.2:c.307G>A	p.Gly103Ser	p.G103S	ENST00000406277	NM_152274.4	103	Ggt/Agt																																												NEWRECORD																																		
FAM58A	0	MSKCC	GRCh37	X	152864483	152864483	+	synonymous_variant	Silent	SNP	C	C	T			P-0020626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			43	18	109	0	ENST00000406277.2:c.45G>A	p.Pro15=	p.P15=	ENST00000406277	NM_152274.4	15	ccG/ccA																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	543	651	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	543	651	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	543	651	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																												NEWRECORD																																		
PDCD1LG2	0	MSKCC	GRCh37	9	5549587	5549616	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGCATTGACCTTCAAAGTAAGAGCTGCC	CCAGCATTGACCTTCAAAGTAAGAGCTGCC	-			P-0020732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	118	858	0	ENST00000397747.3:c.616_631+14del		p.X206_splice	ENST00000397747	NM_025239.3	206																																													NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44929416	44929417	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0020732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	303	516	0	ENST00000377967.4:c.2517_2518del	p.Asn839LysfsTer6	p.N839Kfs*6	ENST00000377967	NM_021140.2	839	aAC/a																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	276	962	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	141	959	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	111	787	2	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212652855	212652856	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			244	35	695	2	ENST00000342788.4:c.450_451delinsAA	p.Asp150_Gln151delinsGluLys	p.D150_Q151delinsEK	ENST00000342788	NM_005235.2	150	gaCCag/gaAAag																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52668785	52668785	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	92	695	0	ENST00000394830.3:c.1134del	p.Phe379LeufsTer25	p.F379Lfs*25	ENST00000394830	NM_018313.4	378	tcC/tc																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876320	35876320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	84	752	1	ENST00000303115.3:c.1112C>A	p.Ala371Asp	p.A371D	ENST00000303115	NM_002185.3	371	gCt/gAt																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86665686	86665686	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	86	705	0	ENST00000274376.6:c.1667A>G	p.Tyr556Cys	p.Y556C	ENST00000274376	NM_002890.2	556	tAc/tGc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56448296	56448297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020578-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	102	967	0	ENST00000407977.2:c.350_351insA	p.Cys119LeufsTer6	p.C119Lfs*6	ENST00000407977		117	cgc/cgAc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	486	944	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66729163	66729163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	44	874	1	ENST00000307102.5:c.371C>T	p.Pro124Leu	p.P124L	ENST00000307102	NM_002755.3	124	cCg/cTg																																												NEWRECORD																																		
PPP6C	0	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			172	184	441	0	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50459531	50459531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	188	414	0	ENST00000331340.3:c.820C>T	p.Arg274Cys	p.R274C	ENST00000331340	NM_006060.4	274	Cgt/Tgt																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	178	472	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333555	70333555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150689919		P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	41	597	0	ENST00000373644.4:c.1460C>T	p.Ser487Leu	p.S487L	ENST00000373644	NM_030625.2	487	tCa/tTa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72992907	72992907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1095	247	898	0	ENST00000268489.5:c.1138C>T	p.Pro380Ser	p.P380S	ENST00000268489	NM_006885.3	380	Cca/Tca																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453185	140453185	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	70	344	0	ENST00000288602.6:c.1750C>T	p.Leu584Phe	p.L584F	ENST00000288602	NM_004333.4	584	Ctt/Ttt																																												NEWRECORD																																		
EIF1AX	0	MSKCC	GRCh37	X	20159748	20159748	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	395	445	0	ENST00000379607.5:c.11A>G	p.Asn4Ser	p.N4S	ENST00000379607	NM_001412.3	4	aAt/aGt																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81381466	81381466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	101	362	0	ENST00000222390.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000222390	NM_000601.4	199	Gaa/Aaa																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38512473	38512473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1714	105	1451	1	ENST00000254066.5:c.1384C>T	p.Pro462Ser	p.P462S	ENST00000254066	NM_000964.3	462	Ccg/Tcg																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12044470	12044470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	95	326	0	ENST00000353533.5:c.1093C>T	p.Pro365Ser	p.P365S	ENST00000353533	NM_003010.3	365	Ccc/Tcc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40739001	40739001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	228	550	0	ENST00000373198.4:c.3283G>A	p.Glu1095Lys	p.E1095K	ENST00000373198	NM_133170.3	1095	Gaa/Aaa																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	68981315	68981315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	69	474	0	ENST00000288368.4:c.1387C>T	p.Arg463Cys	p.R463C	ENST00000288368	NM_024870.2	463	Cgc/Tgc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857061	9857061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	97	375	0	ENST00000330684.3:c.4340C>T	p.Ser1447Phe	p.S1447F	ENST00000330684	NM_001134407.1	1447	tCc/tTc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212484001	212484001	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	78	432	0	ENST00000342788.4:c.2203-1G>A		p.X735_splice	ENST00000342788	NM_005235.2	735																																													NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18793461	18793461	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	66	545	0	ENST00000266497.5:c.4158A>T	p.Lys1386Asn	p.K1386N	ENST00000266497		1386	aaA/aaT																																												NEWRECORD																																		
KNSTRN	0	MSKCC	GRCh37	15	40675068	40675068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	423	959	1	ENST00000249776.8:c.32G>A	p.Arg11Lys	p.R11K	ENST00000249776	NM_033286.3	11	aGa/aAa																																												NEWRECORD																																		
KNSTRN	0	MSKCC	GRCh37	15	40683699	40683699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	164	818	0	ENST00000249776.8:c.691G>A	p.Gly231Ser	p.G231S	ENST00000249776	NM_033286.3	231	Ggc/Agc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9916202	9916202	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	114	575	0	ENST00000330684.3:c.2087A>C	p.Asn696Thr	p.N696T	ENST00000330684	NM_001134407.1	696	aAt/aCt																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934531	9934531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			572	257	594	0	ENST00000330684.3:c.1624G>A	p.Gly542Ser	p.G542S	ENST00000330684	NM_001134407.1	542	Ggc/Agc																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78796005	78796005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	194	792	2	ENST00000306801.3:c.895C>T	p.Pro299Ser	p.P299S	ENST00000306801	NM_020761.2	299	Cct/Tct																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15290300	15290300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1099	157	990	0	ENST00000263388.2:c.3335C>T	p.Pro1112Leu	p.P1112L	ENST00000263388	NM_000435.2	1112	cCt/cTt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212543777	212543777	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			734	40	470	0	ENST00000342788.4:c.1622G>A	p.Gly541Asp	p.G541D	ENST00000342788	NM_005235.2	541	gGt/gAt																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39817534	39817534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	166	608	0	ENST00000288319.7:c.29C>T	p.Ser10Leu	p.S10L	ENST00000288319	NM_182918.3	10	tCa/tTa																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185190813	185190813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			835	204	836	1	ENST00000265026.3:c.1694C>T	p.Thr565Ile	p.T565I	ENST00000265026	NM_004721.4	565	aCt/aTt																																												NEWRECORD																																		
WHSC1	0	MSKCC	GRCh37	4	1957735	1957735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	358	896	0	ENST00000382891.5:c.2701C>T	p.Pro901Ser	p.P901S	ENST00000382891	NM_133335.3	901	Ccc/Tcc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55133480	55133480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	86	632	0	ENST00000257290.5:c.784G>A	p.Glu262Lys	p.E262K	ENST00000257290	NM_006206.4	262	Gaa/Aaa																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553411	106553411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	64	451	1	ENST00000369096.4:c.1376C>T	p.Pro459Leu	p.P459L	ENST00000369096	NM_001198.3	459	cCc/cTc																																												NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128752842	128752842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	65	292	0	ENST00000377970.2:c.1003C>T	p.Pro335Ser	p.P335S	ENST00000377970	NM_002467.4	335	Cct/Tct																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8518223	8518223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020638-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	62	404	0	ENST00000356435.5:c.1168G>A	p.Glu390Lys	p.E390K	ENST00000356435		390	Gaa/Aaa																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100999429	100999429	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs191163476		P-0019030-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	281	1051	0	ENST00000325455.5:c.373G>A	p.Gly125Arg	p.G125R	ENST00000325455	NM_001202474.3	125	Ggg/Agg																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26978189	26978189	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0019030-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			435	200	627	0	ENST00000381527.3:c.1366C>T	p.Gln456Ter	p.Q456*	ENST00000381527	NM_001260.1	456	Cag/Tag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	661	1015	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	559	1120	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014809-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			604	188	748	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115117732	115117732	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014809-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			718	66	541	0	ENST00000257566.3:c.703A>T	p.Ser235Cys	p.S235C	ENST00000257566	NM_016569.3	235	Agt/Tgt																																												NEWRECORD																																		
WHSC1	0	MSKCC	GRCh37	4	1957525	1957525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014809-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	212	827	0	ENST00000382891.5:c.2624G>C	p.Gly875Ala	p.G875A	ENST00000382891	NM_133335.3	875	gGg/gCg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28901633	28901633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014809-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			689	61	648	0	ENST00000282397.4:c.2762T>C	p.Leu921Pro	p.L921P	ENST00000282397	NM_002019.4	921	cTc/cCc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88423637	88423637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014809-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			548	111	488	2	ENST00000360948.2:c.2198C>T	p.Pro733Leu	p.P733L	ENST00000360948	NM_001012338.2	733	cCc/cTc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220409	1220409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014809-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			735	199	911	0	ENST00000326873.7:c.502C>T	p.His168Tyr	p.H168Y	ENST00000326873	NM_000455.4	168	Cat/Tat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	933	2013	0	ENST00000269305.4:c.406C>G	p.Gln136Glu	p.Q136E	ENST00000269305	NM_001126112.2	136	Caa/Gaa																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204518352	204518352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	357	997	1	ENST00000367182.3:c.1015C>A	p.His339Asn	p.H339N	ENST00000367182	NM_001278516.1	339	Cat/Aat																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042265	42042265	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	312	964	0	ENST00000219905.7:c.6460C>G	p.Leu2154Val	p.L2154V	ENST00000219905	NM_001164273.1	2154	Cta/Gta																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8733781	8733781	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0020524-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	451	1081	0	ENST00000356435.5:c.63G>C	p.Glu21Asp	p.E21D	ENST00000356435		21	gaG/gaC																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003329-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			294	46	574	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70338632	70338632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003329-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			690	108	922	0	ENST00000374080.3:c.28G>A	p.Glu10Lys	p.E10K	ENST00000374080		10	Gaa/Aaa																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57484597	57484597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003329-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			497	106	748	0	ENST00000371085.3:c.681G>T	p.Gln227His	p.Q227H	ENST00000371085	NM_000516.4	227	caG/caT																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66270138	66270138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003329-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			528	87	740	1	ENST00000273854.3:c.1744G>A	p.Gly582Arg	p.G582R	ENST00000273854	NM_004439.5	582	Gga/Aga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023858	27023858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003329-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			243	60	496	0	ENST00000324856.7:c.964G>T	p.Asp322Tyr	p.D322Y	ENST00000324856	NM_006015.4	322	Gac/Tac																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852473	63852473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003329-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			580	101	840	1	ENST00000279873.7:c.3251G>A	p.Gly1084Glu	p.G1084E	ENST00000279873	NM_032199.2	1084	gGg/gAg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156846326	156846326	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003329-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			886	150	1239	0	ENST00000524377.1:c.1767T>G	p.Phe589Leu	p.F589L	ENST00000524377	NM_002529.3	589	ttT/ttG																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183734	10183734	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	134	898	0	ENST00000256474.2:c.203C>A	p.Ser68Ter	p.S68*	ENST00000256474	NM_000551.3	68	tCg/tAg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916920	178916922	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0020605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	252	760	0	ENST00000263967.3:c.307_309del	p.Glu103del	p.E103del	ENST00000263967	NM_006218.2	103	GAA/-																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53240976	53240980	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAT	GGCAT	-			P-0020605-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	97	334	0	ENST00000375401.3:c.1231_1235del	p.Met411ArgfsTer19	p.M411Rfs*19	ENST00000375401	NM_004187.3	411	ATGCCc/c																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0020529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1480	91	1708	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29528106	29528106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020529-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	38	803	0	ENST00000358273.4:c.1114G>C	p.Asp372His	p.D372H	ENST00000358273	NM_001042492.2	372	Gat/Cat																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68772218	68772219	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCT			P-0020456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	234	888	0	ENST00000261769.5:c.67_68insTCCT	p.Gln23LeufsTer12	p.Q23Lfs*12	ENST00000261769	NM_004360.3	23	cag/cTCCTag																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57485813	57485813	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	177	535	0	ENST00000371085.3:c.1114A>T	p.Ile372Phe	p.I372F	ENST00000371085	NM_000516.4	372	Atc/Ttc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0020607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	359	694	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0020607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	74	402	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	229	749	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0020607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	127	491	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913998	32913998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	64	689	0	ENST00000380152.3:c.5506A>T	p.Asn1836Tyr	p.N1836Y	ENST00000380152		1836	Aat/Tat																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	245	801	0	ENST00000171111.5:c.556G>A	p.Gly186Ser	p.G186S	ENST00000171111	NM_203500.1	186	Ggc/Agc																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119582295	119582295	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020607-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	545	428	0	ENST00000316626.5:c.1106C>G	p.Thr369Arg	p.T369R	ENST00000316626		369	aCa/aGa																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	863	1002	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	88	1302	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28886179	28886181	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0020521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	87	1132	0	ENST00000282397.4:c.3441_3443del	p.Phe1147_Ala1148delinsLeu	p.F1147_A1148delinsL	ENST00000282397	NM_002019.4	1147	ttTGCa/tta																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988359	36988359	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0020521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	87	905	0	ENST00000354822.5:c.294C>G	p.Tyr98Ter	p.Y98*	ENST00000354822	NM_001079668.2	98	taC/taG																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212587242	212587242	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	76	574	0	ENST00000342788.4:c.759T>A	p.Asn253Lys	p.N253K	ENST00000342788	NM_005235.2	253	aaT/aaA																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	279	858	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	389	1017	1	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	262	694	1	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	502	617	3	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830132	72830132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	618	794	1	ENST00000268489.5:c.6449C>A	p.Thr2150Asn	p.T2150N	ENST00000268489	NM_006885.3	2150	aCc/aAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170699	112170700	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0020461-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	247	742	0	ENST00000257430.4:c.1795_1796del	p.Cys599HisfsTer2	p.C599Hfs*2	ENST00000257430	NM_000038.5	599	TGc/c																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	101	819	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36986986	36986986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	58	804	1	ENST00000354822.5:c.703G>T	p.Val235Phe	p.V235F	ENST00000354822	NM_001079668.2	235	Gtc/Ttc																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988508	36988511	+	frameshift_variant	Frame_Shift_Del	DEL	GACT	GACT	-			P-0020557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	98	1064	0	ENST00000354822.5:c.142_145del	p.Ser48ProfsTer52	p.S48Pfs*52	ENST00000354822	NM_001079668.2	48	AGTCcc/cc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0020555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	336	792	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117875470	117875470	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020555-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	49	698	1	ENST00000297338.2:c.173A>T	p.His58Leu	p.H58L	ENST00000297338	NM_006265.2	58	cAt/cTt																																												NEWRECORD																																		
CARM1	0	MSKCC	GRCh37	19	11015635	11015635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	66	793	0	ENST00000327064.4:c.229G>A	p.Val77Met	p.V77M	ENST00000327064	NM_199141.1	77	Gtg/Atg																																												NEWRECORD																																		
RTEL1	0	MSKCC	GRCh37	20	62317180	62317180	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	123	1109	0	ENST00000508582.2:c.1375G>C	p.Ala459Pro	p.A459P	ENST00000508582		459	Gct/Cct																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30051642	30051643	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0020561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	29	548	0	ENST00000338641.4:c.577_578del	p.Ala193ArgfsTer9	p.A193Rfs*9	ENST00000338641	NM_000268.3	192	taCGca/taca																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	212	822	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198266605	198266605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	121	542	1	ENST00000335508.6:c.2231C>A	p.Ala744Asp	p.A744D	ENST00000335508	NM_012433.2	744	gCt/gAt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821755	72821761	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCCGC	AGCCCGC	-			P-0020559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	75	708	0	ENST00000268489.5:c.10414_10420del	p.Ala3472SerfsTer11	p.A3472Sfs*11	ENST00000268489	NM_006885.3	3472	GCGGGCTtc/tc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56183211	56183211	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020559-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	133	539	0	ENST00000399503.3:c.4121A>G	p.Asn1374Ser	p.N1374S	ENST00000399503	NM_005921.1	1374	aAt/aGt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	95	556	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0020554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	41	447	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0020554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	11	421	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023534	27023534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	98	831	0	ENST00000324856.7:c.640T>C	p.Ser214Pro	p.S214P	ENST00000324856	NM_006015.4	214	Tcc/Ccc																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63554117	63554117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	123	936	0	ENST00000307078.5:c.622G>A	p.Ala208Thr	p.A208T	ENST00000307078	NM_004655.3	208	Gct/Act																																												NEWRECORD																																		
KMT2B	0	MSKCC	GRCh37	19	36216437	36216437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020554-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1134	148	1120	5	ENST00000222270.7:c.3700G>A	p.Glu1234Lys	p.E1234K	ENST00000222270	NM_014727.1	1234	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	129	995	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																												NEWRECORD																																		
EED	0	MSKCC	GRCh37	11	85989562	85989562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	74	472	0	ENST00000263360.6:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000263360	NM_003797.3	441	Cga/Tga																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	79	1064	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0020483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	44	751	3	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77103408	77103408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	50	612	0	ENST00000356341.3:c.158G>A	p.Arg53Gln	p.R53Q	ENST00000356341	NM_002576.4	53	cGa/cAa																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88476309	88476309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	93	1186	1	ENST00000360948.2:c.1823G>A	p.Gly608Asp	p.G608D	ENST00000360948	NM_001012338.2	608	gGc/gAc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108164176	108164176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	27	542	0	ENST00000278616.4:c.4748A>G	p.Tyr1583Cys	p.Y1583C	ENST00000278616	NM_000051.3	1583	tAc/tGc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108218084	108218084	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	52	754	0	ENST00000278616.4:c.8663T>G	p.Ile2888Arg	p.I2888R	ENST00000278616	NM_000051.3	2888	aTa/aGa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020458-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	39	918	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	51	946	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1272	90	1231	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	46	637	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115118950	115118950	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	22	363	0	ENST00000257566.3:c.391C>T	p.Arg131Ter	p.R131*	ENST00000257566	NM_016569.3	131	Cga/Tga																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95572534	95572534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	29	444	0	ENST00000343455.3:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000343455	NM_177438.2	944	cGa/cAa																																												NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47164577	47164577	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	30	538	0	ENST00000409792.3:c.1549G>T	p.Glu517Ter	p.E517*	ENST00000409792	NM_014159.6	517	Gaa/Taa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			979	62	1144	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	54	812	1	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175930	112175930	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	22	359	0	ENST00000257430.4:c.4639G>T	p.Glu1547Ter	p.E1547*	ENST00000257430	NM_000038.5	1547	Gaa/Taa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108098419	108098419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	39	606	1	ENST00000278616.4:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000278616	NM_000051.3	23	cGa/cAa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508127	106508127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	27	365	0	ENST00000359195.3:c.121G>A	p.Glu41Lys	p.E41K	ENST00000359195	NM_002649.2	41	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	70	1247	0	ENST00000269305.4:c.378C>A	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taA																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662211	227662211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	63	1015	0	ENST00000305123.5:c.1244C>T	p.Ser415Leu	p.S415L	ENST00000305123	NM_005544.2	415	tCg/tTg																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71026984	71026984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	55	706	0	ENST00000318789.4:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000318789	NM_032682.5	448	tCg/tTg																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100920785	100920785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	38	755	0	ENST00000325455.5:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000325455	NM_001202474.3	788	cGg/cAg																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47702266	47702266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	52	892	3	ENST00000233146.2:c.1862G>A	p.Arg621Gln	p.R621Q	ENST00000233146	NM_000251.2	621	cGa/cAa																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	55	731	2	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57861838	57861838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	71	1024	2	ENST00000228682.2:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000228682	NM_005269.2	380	cGa/cAa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	45	738	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156829	106156829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	51	744	0	ENST00000380013.4:c.1730C>T	p.Ser577Phe	p.S577F	ENST00000380013	NM_001127208.2	577	tCc/tTc																																												NEWRECORD																																		
GPS2	0	MSKCC	GRCh37	17	7216091	7216091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	52	528	0	ENST00000380728.2:c.968G>A	p.Arg323Gln	p.R323Q	ENST00000380728		323	cGa/cAa																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	31	550	0	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509045	106509045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	63	816	0	ENST00000359195.3:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000359195	NM_002649.2	347	Gag/Aag																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108201008	108201008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	54	635	0	ENST00000278616.4:c.7375C>T	p.Arg2459Cys	p.R2459C	ENST00000278616	NM_000051.3	2459	Cgt/Tgt																																												NEWRECORD																																		
H3F3C	0	MSKCC	GRCh37	12	31944947	31944947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	49	642	0	ENST00000340398.3:c.154C>T	p.Arg52Cys	p.R52C	ENST00000340398	NM_001013699.2	52	Cgt/Tgt																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225362541	225362541	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	55	769	0	ENST00000264414.4:c.1636C>T	p.Arg546Ter	p.R546*	ENST00000264414	NM_003590.4	546	Cga/Tga																																												NEWRECORD																																		
HIST3H3	0	MSKCC	GRCh37	1	228612879	228612879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	64	927	0	ENST00000366696.1:c.148C>T	p.Arg50Cys	p.R50C	ENST00000366696	NM_003493.2	50	Cgc/Tgc																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73333960	73333960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	60	979	1	ENST00000377767.4:c.2850G>T	p.Lys950Asn	p.K950N	ENST00000377767	NM_014953.3	950	aaG/aaT																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591086	67591086	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	24	429	1	ENST00000274335.5:c.1679A>G	p.Asp560Gly	p.D560G	ENST00000274335		560	gAc/gGc																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25457192	25457192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	60	927	2	ENST00000264709.3:c.2695C>T	p.Arg899Cys	p.R899C	ENST00000264709	NM_175629.2	899	Cgc/Tgc																																												NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81350062	81350062	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs759145490		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	44	631	1	ENST00000222390.5:c.1270C>T	p.Arg424Cys	p.R424C	ENST00000222390	NM_000601.4	424	Cgt/Tgt																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103518106	103518106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	79	474	0	ENST00000355739.4:c.2044G>A	p.Glu682Lys	p.E682K	ENST00000355739	NM_000123.3	682	Gaa/Aaa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72992667	72992667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	41	680	0	ENST00000268489.5:c.1378G>A	p.Glu460Lys	p.E460K	ENST00000268489	NM_006885.3	460	Gaa/Aaa																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135797217	135797217	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	24	437	0	ENST00000298552.3:c.652G>T	p.Glu218Ter	p.E218*	ENST00000298552	NM_001162426.1	218	Gaa/Taa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178943780	178943780	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	49	711	0	ENST00000263967.3:c.2447T>G	p.Ile816Ser	p.I816S	ENST00000263967	NM_006218.2	816	aTt/aGt																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	11905514	11905514	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	34	411	0	ENST00000396373.4:c.163+1G>A		p.X55_splice	ENST00000396373	NM_001987.4	55																																													NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143159157	143159157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	28	541	0	ENST00000262992.4:c.696G>T	p.Lys232Asn	p.K232N	ENST00000262992	NM_001101669.1	232	aaG/aaT																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143159098	143159098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	42	830	1	ENST00000262992.4:c.755G>A	p.Arg252Gln	p.R252Q	ENST00000262992	NM_001101669.1	252	cGa/cAa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509138	106509138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	75	814	4	ENST00000359195.3:c.1132G>A	p.Asp378Asn	p.D378N	ENST00000359195	NM_002649.2	378	Gac/Aac																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56176999	56176999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	53	726	2	ENST00000399503.3:c.2269C>T	p.Arg757Cys	p.R757C	ENST00000399503	NM_005921.1	757	Cgc/Tgc																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103527931	103527931	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs4150388		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	109	532	0	ENST00000355739.4:c.3239G>A	p.Gly1080Glu	p.G1080E	ENST00000355739	NM_000123.3	1080	gGa/gAa																																												NEWRECORD																																		
WWTR1	0	MSKCC	GRCh37	3	149260151	149260151	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	48	744	1	ENST00000360632.3:c.742C>T	p.Arg248Ter	p.R248*	ENST00000360632	NM_015472.4	248	Cga/Tga																																												NEWRECORD																																		
KMT2D	0	MSKCC	GRCh37	12	49437701	49437701	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	67	1202	4	ENST00000301067.7:c.5269C>T	p.Arg1757Ter	p.R1757*	ENST00000301067	NM_003482.3	1757	Cga/Tga																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16085971	16085971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	49	783	2	ENST00000281043.3:c.1147C>T	p.Arg383Cys	p.R383C	ENST00000281043	NM_005378.4	383	Cgc/Tgc																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9776674	9776674	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	73	1055	1	ENST00000377346.4:c.777C>A	p.Phe259Leu	p.F259L	ENST00000377346	NM_005026.3	259	ttC/ttA																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16257495	16257495	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	49	593	0	ENST00000375759.3:c.4760T>G	p.Phe1587Cys	p.F1587C	ENST00000375759	NM_015001.2	1587	tTt/tGt																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36933246	36933246	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144754091		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	59	959	4	ENST00000361632.4:c.1871C>T	p.Ser624Leu	p.S624L	ENST00000361632		624	tCg/tTg																																												NEWRECORD																																		
MUTYH	0	MSKCC	GRCh37	1	45795028	45795028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	59	965	2	ENST00000372115.3:c.1558C>T	p.Arg520Trp	p.R520W	ENST00000372115	NM_001048171.1	520	Cgg/Tgg																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46725722	46725722	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	55	811	0	ENST00000371975.4:c.358C>A	p.Leu120Met	p.L120M	ENST00000371975	NM_003579.3	120	Ctg/Atg																																												NEWRECORD																																		
CDKN2C	0	MSKCC	GRCh37	1	51439711	51439711	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	44	482	0	ENST00000262662.1:c.276T>G	p.Phe92Leu	p.F92L	ENST00000262662		92	ttT/ttG																																												NEWRECORD																																		
CSDE1	0	MSKCC	GRCh37	1	115263336	115263336	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	60	903	0	ENST00000438362.2:c.2014G>A	p.Asp672Asn	p.D672N	ENST00000438362	NM_001242891.1	672	Gat/Aat																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70406000	70406000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			969	65	918	2	ENST00000373644.4:c.3514G>T	p.Asp1172Tyr	p.D1172Y	ENST00000373644	NM_030625.2	1172	Gat/Tat																																												NEWRECORD																																		
LMO1	0	MSKCC	GRCh37	11	8251854	8251854	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	51	864	0	ENST00000335790.3:c.223C>T	p.Arg75Ter	p.R75*	ENST00000335790	NM_002315.2	75	Cga/Tga																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64129419	64129419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	102	1122	2	ENST00000334205.4:c.851G>A	p.Arg284Gln	p.R284Q	ENST00000334205	NM_003942.2	284	cGa/cAa																																												NEWRECORD																																		
SESN3	0	MSKCC	GRCh37	11	94918560	94918560	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	51	996	0	ENST00000536441.1:c.622T>G	p.Phe208Val	p.F208V	ENST00000536441	NM_144665.3	208	Ttt/Gtt																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100912699	100912699	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	47	771	0	ENST00000325455.5:c.2623A>C	p.Lys875Gln	p.K875Q	ENST00000325455	NM_001202474.3	875	Aaa/Caa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108203577	108203577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	37	676	0	ENST00000278616.4:c.7877C>T	p.Ala2626Val	p.A2626V	ENST00000278616	NM_000051.3	2626	gCt/gTt																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118352474	118352474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	32	639	0	ENST00000534358.1:c.3679G>T	p.Asp1227Tyr	p.D1227Y	ENST00000534358	NM_005933.3	1227	Gac/Tac																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118374150	118374150	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	38	617	0	ENST00000534358.1:c.7543T>G	p.Leu2515Val	p.L2515V	ENST00000534358	NM_005933.3	2515	Tta/Gta																																												NEWRECORD																																		
CHEK1	0	MSKCC	GRCh37	11	125514077	125514077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	64	954	0	ENST00000428830.2:c.1015G>A	p.Val339Ile	p.V339I	ENST00000428830	NM_001114121.2	339	Gta/Ata																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	438161	438161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	51	699	1	ENST00000399788.2:c.1808G>A	p.Arg603Gln	p.R603Q	ENST00000399788	NM_001042603.1	603	cGa/cAa																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	475203	475203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	66	1140	1	ENST00000399788.2:c.434G>A	p.Arg145His	p.R145H	ENST00000399788	NM_001042603.1	145	cGc/cAc																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	495135	495135	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	42	643	0	ENST00000399788.2:c.171G>A	p.Trp57Ter	p.W57*	ENST00000399788	NM_001042603.1	57	tgG/tgA																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4385180	4385180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	40	675	0	ENST00000261254.3:c.205G>A	p.Glu69Lys	p.E69K	ENST00000261254	NM_001759.3	69	Gaa/Aaa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18715741	18715741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			588	38	585	0	ENST00000266497.5:c.3572C>T	p.Thr1191Ile	p.T1191I	ENST00000266497		1191	aCt/aTt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46215235	46215235	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	26	532	0	ENST00000334344.6:c.670G>T	p.Glu224Ter	p.E224*	ENST00000334344	NM_152641.2	224	Gaa/Taa																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57865213	57865213	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1228	76	1120	0	ENST00000228682.2:c.2690T>G	p.Leu897Arg	p.L897R	ENST00000228682	NM_005269.2	897	cTt/cGt																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21620051	21620051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1175	78	1026	6	ENST00000382592.4:c.115G>A	p.Ala39Thr	p.A39T	ENST00000382592	NM_014572.2	39	Gca/Aca																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26959447	26959447	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	147	775	0	ENST00000381527.3:c.614T>G	p.Leu205Arg	p.L205R	ENST00000381527	NM_001260.1	205	cTt/cGt																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134681	41134681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	107	661	0	ENST00000379561.5:c.947G>A	p.Arg316Gln	p.R316Q	ENST00000379561	NM_002015.3	316	cGa/cAa																																												NEWRECORD																																		
PRKD1	0	MSKCC	GRCh37	14	30093357	30093357	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	40	850	2	ENST00000331968.5:c.1905+1G>A		p.X635_splice	ENST00000331968	NM_002742.2	635																																													NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36986833	36986833	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	50	565	0	ENST00000354822.5:c.856C>T	p.Arg286Ter	p.R286*	ENST00000354822	NM_001079668.2	286	Cga/Tga																																												NEWRECORD																																		
SLX4	0	MSKCC	GRCh37	16	3641221	3641221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1650	134	1552	1	ENST00000294008.3:c.2418G>T	p.Glu806Asp	p.E806D	ENST00000294008	NM_032444.2	806	gaG/gaT																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10273878	10273878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	82	1157	2	ENST00000330684.3:c.391G>A	p.Ala131Thr	p.A131T	ENST00000330684	NM_001134407.1	131	Gca/Aca																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23647343	23647343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	70	982	1	ENST00000261584.4:c.524G>T	p.Arg175Ile	p.R175I	ENST00000261584	NM_024675.3	175	aGa/aTa																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56852631	56852631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	60	814	0	ENST00000308159.5:c.545A>G	p.Glu182Gly	p.E182G	ENST00000308159	NM_014669.4	182	gAg/gGg																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67655373	67655373	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			974	79	923	0	ENST00000264010.4:c.1236T>A	p.Cys412Ter	p.C412*	ENST00000264010	NM_006565.3	412	tgT/tgA																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72827421	72827421	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	60	1111	0	ENST00000268489.5:c.9160G>T	p.Asp3054Tyr	p.D3054Y	ENST00000268489	NM_006885.3	3054	Gac/Tac																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81944267	81944267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	75	1032	1	ENST00000359376.3:c.1876G>A	p.Glu626Lys	p.E626K	ENST00000359376	NM_002661.3	626	Gag/Aag																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81973552	81973552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	67	958	0	ENST00000359376.3:c.3369A>C	p.Glu1123Asp	p.E1123D	ENST00000359376	NM_002661.3	1123	gaA/gaC																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89346073	89346073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			96	13	108	0	ENST00000301030.4:c.6877G>A	p.Asp2293Asn	p.D2293N	ENST00000301030	NM_001256183.1	2293	Gac/Aac																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89347486	89347486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	44	803	1	ENST00000301030.4:c.5464G>A	p.Asp1822Asn	p.D1822N	ENST00000301030	NM_001256183.1	1822	Gac/Aac																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89349877	89349877	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1492	110	1562	0	ENST00000301030.4:c.3073C>A	p.Pro1025Thr	p.P1025T	ENST00000301030	NM_001256183.1	1025	Cca/Aca																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89351718	89351718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1224	76	1155	0	ENST00000301030.4:c.1232C>T	p.Ser411Leu	p.S411L	ENST00000301030	NM_001256183.1	411	tCg/tTg																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15971357	15971357	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151311067		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	67	921	0	ENST00000268712.3:c.4592C>T	p.Ala1531Val	p.A1531V	ENST00000268712	NM_006311.3	1531	gCg/gTg																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17131373	17131373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	88	956	2	ENST00000285071.4:c.79G>A	p.Ala27Thr	p.A27T	ENST00000285071	NM_144997.5	27	Gcc/Acc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435098	56435098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	84	973	0	ENST00000407977.2:c.2039T>G	p.Ile680Ser	p.I680S	ENST00000407977		680	aTt/aGt																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740723	58740723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	51	848	1	ENST00000305921.3:c.1628C>A	p.Ser543Tyr	p.S543Y	ENST00000305921	NM_003620.3	543	tCt/tAt																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78796881	78796881	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	43	639	0	ENST00000306801.3:c.994C>A	p.Leu332Ile	p.L332I	ENST00000306801	NM_020761.2	332	Ctc/Atc																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7122984	7122984	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1176	75	1269	0	ENST00000302850.5:c.3275T>G	p.Val1092Gly	p.V1092G	ENST00000302850	NM_000208.2	1092	gTg/gGg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7168072	7168072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	69	878	0	ENST00000302850.5:c.1517G>A	p.Arg506Gln	p.R506Q	ENST00000302850	NM_000208.2	506	cGg/cAg																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10246843	10246843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1225	82	1202	1	ENST00000340748.4:c.4562G>A	p.Gly1521Asp	p.G1521D	ENST00000340748		1521	gGc/gAc																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10246861	10246861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1271	75	1208	0	ENST00000340748.4:c.4544G>A	p.Gly1515Glu	p.G1515E	ENST00000340748		1515	gGa/gAa																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10265385	10265385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	66	1133	2	ENST00000340748.4:c.1661C>T	p.Ala554Val	p.A554V	ENST00000340748		554	gCg/gTg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602769	10602769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1304	107	1194	3	ENST00000171111.5:c.809C>T	p.Ala270Val	p.A270V	ENST00000171111	NM_203500.1	270	gCc/gTc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15349232	15349232	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	62	892	0	ENST00000263377.2:c.4045T>G	p.Phe1349Val	p.F1349V	ENST00000263377	NM_058243.2	1349	Ttc/Gtc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15375309	15375309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1142	66	1061	1	ENST00000263377.2:c.1118C>T	p.Ala373Val	p.A373V	ENST00000263377	NM_058243.2	373	gCc/gTc																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17949196	17949196	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	81	814	0	ENST00000458235.1:c.1445A>C	p.Lys482Thr	p.K482T	ENST00000458235	NM_000215.3	482	aAg/aCg																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128036895	128036895	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	89	1020	0	ENST00000285398.2:c.1584G>T	p.Lys528Asn	p.K528N	ENST00000285398	NM_000122.1	528	aaG/aaT																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178095813	178095813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	58	705	0	ENST00000397062.3:c.1518G>T	p.Lys506Asn	p.K506N	ENST00000397062	NM_006164.4	506	aaG/aaT																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227663425	227663425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	44	526	0	ENST00000305123.5:c.30C>A	p.Phe10Leu	p.F10L	ENST00000305123	NM_005544.2	10	ttC/ttA																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42839671	42839671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	84	1076	3	ENST00000398585.3:c.1568G>A	p.Arg523Gln	p.R523Q	ENST00000398585	NM_001135099.1	523	cGa/cAa																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30035134	30035134	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	63	870	0	ENST00000338641.4:c.296A>C	p.Lys99Thr	p.K99T	ENST00000338641	NM_000268.3	99	aAa/aCa																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41523693	41523693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	70	1193	2	ENST00000263253.7:c.1109G>A	p.Arg370His	p.R370H	ENST00000263253	NM_001429.3	370	cGc/cAc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41551082	41551082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	64	1063	2	ENST00000263253.7:c.3226C>T	p.Arg1076Cys	p.R1076C	ENST00000263253	NM_001429.3	1076	Cgt/Tgt																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12641287	12641287	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			738	50	758	0	ENST00000251849.4:c.1011T>G	p.Asp337Glu	p.D337E	ENST00000251849	NM_002880.3	337	gaT/gaG																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47163387	47163387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	42	529	0	ENST00000409792.3:c.2739G>T	p.Lys913Asn	p.K913N	ENST00000409792	NM_014159.6	913	aaG/aaT																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49723053	49723053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	25	337	3	ENST00000449682.2:c.1363G>A	p.Asp455Asn	p.D455N	ENST00000449682	NM_020998.3	455	Gac/Aac																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52442051	52442051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			960	74	891	1	ENST00000460680.1:c.298C>T	p.Leu100Phe	p.L100F	ENST00000460680	NM_004656.3	100	Ctc/Ttc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643618	52643618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	62	772	1	ENST00000394830.3:c.2278C>T	p.Arg760Cys	p.R760C	ENST00000394830	NM_018313.4	760	Cgc/Tgc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52649387	52649387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	68	1180	2	ENST00000394830.3:c.1904C>T	p.Ala635Val	p.A635V	ENST00000394830	NM_018313.4	635	gCt/gTt																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52651531	52651531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	45	727	0	ENST00000394830.3:c.1565G>A	p.Arg522Gln	p.R522Q	ENST00000394830	NM_018313.4	522	cGa/cAa																																												NEWRECORD																																		
EPHA3	2042	MSKCC	GRCh37	3	89498444	89498444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	35	530	0	ENST00000336596.2:c.2416G>A	p.Asp806Asn	p.D806N	ENST00000336596	NM_005233.5	806	Gat/Aat																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119720900	119720900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	39	599	0	ENST00000316626.5:c.275G>T	p.Arg92Ile	p.R92I	ENST00000316626		92	aGa/aTa																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142279197	142279197	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200968047		P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	63	962	3	ENST00000350721.4:c.1449G>T	p.Lys483Asn	p.K483N	ENST00000350721	NM_001184.3	483	aaG/aaT																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185195171	185195171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	42	579	1	ENST00000265026.3:c.2488C>T	p.Pro830Ser	p.P830S	ENST00000265026	NM_004721.4	830	Cca/Tca																																												NEWRECORD																																		
WHSC1	0	MSKCC	GRCh37	4	1920289	1920289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			964	79	976	3	ENST00000382891.5:c.1349G>T	p.Arg450Leu	p.R450L	ENST00000382891	NM_133335.3	450	cGa/cTa																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153251901	153251901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	43	838	0	ENST00000281708.4:c.1105G>T	p.Glu369Ter	p.E369*	ENST00000281708	NM_033632.3	369	Gaa/Taa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187517775	187517775	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	32	332	0	ENST00000441802.2:c.12919A>C	p.Asn4307His	p.N4307H	ENST00000441802	NM_005245.3	4307	Aac/Cac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187524651	187524651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1022	72	1110	0	ENST00000441802.2:c.11029G>A	p.Asp3677Asn	p.D3677N	ENST00000441802	NM_005245.3	3677	Gac/Aac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187534462	187534462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	41	585	0	ENST00000441802.2:c.9264G>T	p.Glu3088Asp	p.E3088D	ENST00000441802	NM_005245.3	3088	gaG/gaT																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	218531	218531	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	23	179	2	ENST00000264932.6:c.61G>A	p.Ala21Thr	p.A21T	ENST00000264932	NM_004168.2	21	Gcg/Acg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38962629	38962629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	35	784	1	ENST00000357387.3:c.1626G>T	p.Glu542Asp	p.E542D	ENST00000357387	NM_152756.3	542	gaG/gaT																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589552	67589552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	18	407	0	ENST00000274335.5:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000274335		439	Gaa/Aaa																																												NEWRECORD																																		
MSH3	0	MSKCC	GRCh37	5	80160683	80160684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1076	73	1297	0	ENST00000265081.6:c.3059dup	p.Asn1020LysfsTer17	p.N1020Kfs*17	ENST00000265081	NM_002439.4	1018	gaa/gAaa																																												NEWRECORD																																		
MSH3	0	MSKCC	GRCh37	5	80169100	80169100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	33	561	2	ENST00000265081.6:c.3296C>T	p.Thr1099Met	p.T1099M	ENST00000265081	NM_002439.4	1099	aCg/aTg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173632	112173632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	37	504	1	ENST00000257430.4:c.2341C>T	p.Pro781Ser	p.P781S	ENST00000257430	NM_000038.5	781	Ccc/Tcc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177223	112177223	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	39	394	1	ENST00000257430.4:c.5932G>T	p.Glu1978Ter	p.E1978*	ENST00000257430	NM_000038.5	1978	Gaa/Taa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176631256	176631256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	35	502	0	ENST00000439151.2:c.1199G>A	p.Arg400Lys	p.R400K	ENST00000439151	NM_022455.4	400	aGa/aAa																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180050958	180050958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	78	1302	4	ENST00000261937.6:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000261937	NM_182925.4	509	Gag/Aag																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32166821	32166821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1199	82	1013	1	ENST00000375023.3:c.4417C>T	p.Arg1473Cys	p.R1473C	ENST00000375023	NM_004557.3	1473	Cgt/Tgt																																												NEWRECORD																																		
TAP2	0	MSKCC	GRCh37	6	32797788	32797788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	54	985	2	ENST00000374899.4:c.1714G>A	p.Glu572Lys	p.E572K	ENST00000374899	NM_018833.2	572	Gaa/Aaa																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93979253	93979253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	37	661	0	ENST00000369303.4:c.1575T>G	p.Asn525Lys	p.N525K	ENST00000369303	NM_004440.3	525	aaT/aaG																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106534430	106534430	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	35	591	0	ENST00000369096.4:c.2T>G	p.Met1?	p.M1?	ENST00000369096	NM_001198.3	1	aTg/aGg																																												NEWRECORD																																		
SESN1	0	MSKCC	GRCh37	6	109314090	109314090	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	47	870	0	ENST00000436639.2:c.1133T>G	p.Val378Gly	p.V378G	ENST00000436639	NM_014454.2	378	gTt/gGt																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729631	41729631	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	42	760	0	ENST00000242208.4:c.898T>G	p.Ser300Ala	p.S300A	ENST00000242208	NM_002192.2	300	Tct/Gct																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55210116	55210116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	44	850	0	ENST00000275493.2:c.226C>A	p.Leu76Ile	p.L76I	ENST00000275493	NM_005228.3	76	Ctt/Att																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116339776	116339776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	37	587	0	ENST00000397752.3:c.638C>T	p.Ser213Leu	p.S213L	ENST00000397752	NM_000245.2	213	tCg/tTg																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151845367	151845367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			896	59	882	0	ENST00000262189.6:c.13645C>T	p.Arg4549Cys	p.R4549C	ENST00000262189	NM_170606.2	4549	Cgc/Tgc																																												NEWRECORD																																		
KMT2C	0	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	37	589	1	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38279438	38279438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	68	876	1	ENST00000425967.3:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000425967	NM_001174067.1	351	Gac/Aac																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117874125	117874125	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			729	56	865	0	ENST00000297338.2:c.329T>C	p.Leu110Ser	p.L110S	ENST00000297338	NM_006265.2	110	tTa/tCa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8485846	8485846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	32	557	1	ENST00000356435.5:c.2971G>A	p.Asp991Asn	p.D991N	ENST00000356435		991	Gat/Aat																																												NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27157936	27157936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	47	868	1	ENST00000380036.4:c.160C>A	p.Pro54Thr	p.P54T	ENST00000380036	NM_000459.3	54	Ccc/Acc																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	37034011	37034011	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	52	641	0	ENST00000358127.4:c.18T>A	p.Asn6Lys	p.N6K	ENST00000358127	NM_001280556.1	6	aaT/aaA																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93650169	93650169	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	51	713	0	ENST00000375746.1:c.1720C>T	p.Arg574Ter	p.R574*	ENST00000375746	NM_001174167.1	574	Cga/Tga																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98238441	98238441	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	34	542	0	ENST00000331920.6:c.1603G>A	p.Asp535Asn	p.D535N	ENST00000331920	NM_000264.3	535	Gac/Aac																																												NEWRECORD																																		
MAPKAP1	0	MSKCC	GRCh37	9	128347994	128347994	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	72	1157	1	ENST00000265960.3:c.511A>G	p.Thr171Ala	p.T171A	ENST00000265960	NM_001006617.1	171	Aca/Gca																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133760166	133760166	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020473-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	46	784	1	ENST00000318560.5:c.2489T>A	p.Leu830His	p.L830H	ENST00000318560	NM_005157.4	830	cTc/cAc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0020474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	171	994	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0020474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	65	626	1	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48947540	48947540	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0020474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	186	880	0	ENST00000267163.4:c.1128-1G>C		p.X376_splice	ENST00000267163	NM_000321.2	376																																													NEWRECORD																																		
NFKBIA	0	MSKCC	GRCh37	14	35871652	35871652	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020474-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	61	610	0	ENST00000216797.5:c.854A>T	p.Asp285Val	p.D285V	ENST00000216797	NM_020529.2	285	gAt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020472-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1109	164	1111	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020472-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			491	30	515	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5229545	5229545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020472-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	64	336	1	ENST00000357368.4:c.2306G>A	p.Arg769His	p.R769H	ENST00000357368	NM_002850.3	769	cGc/cAc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52663039	52663039	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020472-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			484	42	412	0	ENST00000394830.3:c.1314G>C	p.Lys438Asn	p.K438N	ENST00000394830	NM_018313.4	438	aaG/aaC																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0020481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	401	1096	1	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																													NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100998214	100998215	+	missense_variant	Missense_Mutation	DNP	GC	GC	AG			P-0020481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	43	820	6	ENST00000325455.5:c.1587_1588delinsCT	p.Leu530Phe	p.L530F	ENST00000325455	NM_001202474.3	529	gtGCtc/gtCTtc																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103518158	103518158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	49	420	0	ENST00000355739.4:c.2096G>C	p.Ser699Thr	p.S699T	ENST00000355739	NM_000123.3	699	aGc/aCc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67590424	67590424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	152	347	0	ENST00000274335.5:c.1486G>C	p.Glu496Gln	p.E496Q	ENST00000274335		496	Gaa/Caa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173956	112173957	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0020481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	312	561	0	ENST00000257430.4:c.2666_2667del	p.Lys889SerfsTer22	p.K889Sfs*22	ENST00000257430	NM_000038.5	889	AAa/a																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	373	931	0	ENST00000358487.5:c.1647T>G	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaG																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	83	462	1	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			884	197	1108	1	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89690802	89690802	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0020478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	202	657	0	ENST00000371953.3:c.210-1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70																																													NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107088	27107099	+	inframe_deletion	In_Frame_Del	DEL	GGCTGCCCGCGC	GGCTGCCCGCGC	-			P-0020478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	166	703	0	ENST00000324856.7:c.6700_6711del	p.Ala2234_Ala2237del	p.A2234_A2237del	ENST00000324856	NM_006015.4	2233	cgGGCTGCCCGCGCg/cgg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89653800	89653800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			608	83	676	0	ENST00000371953.3:c.98T>C	p.Ile33Thr	p.I33T	ENST00000371953	NM_000314.4	33	aTt/aCt																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100996769	100996770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0020478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	125	833	0	ENST00000325455.5:c.1756_1757dup	p.Ser586ArgfsTer64	p.S586Rfs*64	ENST00000325455	NM_001202474.3	586	agc/agAGc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67588927	67588927	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0020478-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	76	497	0	ENST00000274335.5:c.1020-2A>G		p.X340_splice	ENST00000274335		340																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0020480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	183	1127	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251754	212251754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	34	505	0	ENST00000342788.4:c.3305T>G	p.Phe1102Cys	p.F1102C	ENST00000342788	NM_005235.2	1102	tTt/tGt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11264705	11264705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	105	1080	2	ENST00000361445.4:c.3857G>A	p.Arg1286Gln	p.R1286Q	ENST00000361445	NM_004958.3	1286	cGg/cAg																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29910711	29910711	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1328	258	1430	1	ENST00000376809.5:c.251G>A	p.Trp84Ter	p.W84*	ENST00000376809	NM_002116.7	84	tGg/tAg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	189	880	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	298	1469	0	ENST00000269305.4:c.464C>A	p.Thr155Asn	p.T155N	ENST00000269305	NM_001126112.2	155	aCc/aAc																																												NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2466	225	1472	6	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	416673	416673	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	231	594	0	ENST00000399788.2:c.3877G>T	p.Glu1293Ter	p.E1293*	ENST00000399788	NM_001042603.1	1293	Gaa/Taa																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115115462	115115462	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	165	848	2	ENST00000257566.3:c.865-1G>T		p.X289_splice	ENST00000257566	NM_016569.3	289																																													NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49039497	49039497	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	220	871	0	ENST00000267163.4:c.2482A>T	p.Arg828Ter	p.R828*	ENST00000267163	NM_000321.2	828	Aga/Tga																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42059132	42059132	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	127	665	0	ENST00000219905.7:c.8852C>G	p.Thr2951Ser	p.T2951S	ENST00000219905	NM_001164273.1	2951	aCt/aGt																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7979002	7979002	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150371678		P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	222	1130	2	ENST00000319144.4:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000319144	NM_001139.2	522	cCg/cTg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78935227	78935227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1168	307	1368	0	ENST00000306801.3:c.3639G>C	p.Trp1213Cys	p.W1213C	ENST00000306801	NM_020761.2	1213	tgG/tgC																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	736922	736922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	178	1109	0	ENST00000314574.4:c.1177A>G	p.Ile393Val	p.I393V	ENST00000314574	NM_005433.3	393	Att/Gtt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8341793	8341793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020477-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	220	1212	0	ENST00000356435.5:c.4847G>T	p.Gly1616Val	p.G1616V	ENST00000356435		1616	gGa/gTa																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71050124	71050128	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGTAG	TGTAG	-			P-0020512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	75	470	0	ENST00000318789.4:c.1057_1061del	p.Leu353AlafsTer106	p.L353Afs*106	ENST00000318789	NM_032682.5	353	CTACAg/g																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135780998	135780998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020512-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	178	763	0	ENST00000298552.3:c.1967G>A	p.Gly656Glu	p.G656E	ENST00000298552	NM_001162426.1	656	gGa/gAa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015826-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			705	432	635	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0015826-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			276	426	796	0	ENST00000269305.4:c.792_794delACT	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	242	897	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29416304	29416304	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	304	963	2	ENST00000389048.3:c.4649T>A	p.Leu1550His	p.L1550H	ENST00000389048	NM_004304.4	1550	cTt/cAt																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	36840564	36840564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020428-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	292	1004	1	ENST00000358127.4:c.1169G>A	p.Arg390His	p.R390H	ENST00000358127	NM_001280556.1	390	cGt/cAt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015576-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			806	121	1200	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41988276	41988277	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015576-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			651	35	1075	0	ENST00000219905.7:c.1069dup	p.Ile357AsnfsTer6	p.I357Nfs*6	ENST00000219905	NM_001164273.1	356	-/A																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602611	10602611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015576-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			604	133	1362	0	ENST00000171111.5:c.967A>G	p.Lys323Glu	p.K323E	ENST00000171111	NM_203500.1	323	Aag/Gag																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378634	25378634	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015576-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			749	134	1220	0	ENST00000256078.4:c.364T>C	p.Ser122Pro	p.S122P	ENST00000256078	NM_033360.2	122	Tct/Cct																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042296	42042297	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0015576-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	27	849	0	ENST00000219905.7:c.6493_6494del	p.Asp2165LeufsTer29	p.D2165Lfs*29	ENST00000219905	NM_001164273.1	2164	gGA/g																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	236649	236649	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76896145		P-0020434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	10	781	2	ENST00000264932.6:c.1367C>T	p.Ser456Leu	p.S456L	ENST00000264932	NM_004168.2	456	tCg/tTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			40	431	897	0	ENST00000269305.4:c.776A>T	p.Asp259Val	p.D259V	ENST00000269305	NM_001126112.2	259	gAc/gTc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212288969	212288969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148791072		P-0020434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	84	923	0	ENST00000342788.4:c.2777C>T	p.Thr926Met	p.T926M	ENST00000342788	NM_005235.2	926	aCg/aTg																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36937989	36937989	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	107	1082	0	ENST00000361632.4:c.847G>C	p.Gly283Arg	p.G283R	ENST00000361632		283	Ggc/Cgc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32911736	32911736	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			113	91	919	0	ENST00000380152.3:c.3244A>G	p.Lys1082Glu	p.K1082E	ENST00000380152		1082	Aaa/Gaa																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2131758	2131758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	309	1133	1	ENST00000219476.3:c.3773C>T	p.Ala1258Val	p.A1258V	ENST00000219476	NM_000548.3	1258	gCc/gTc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15376332	15376332	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	132	1215	0	ENST00000263377.2:c.682G>C	p.Val228Leu	p.V228L	ENST00000263377	NM_058243.2	228	Gtc/Ctc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55124943	55124943	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	55	1000	1	ENST00000257290.5:c.8C>G	p.Thr3Ser	p.T3S	ENST00000257290	NM_006206.4	3	aCt/aGt																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93973625	93973625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	28	655	0	ENST00000369303.4:c.1751G>C	p.Gly584Ala	p.G584A	ENST00000369303	NM_004440.3	584	gGt/gCt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157517392	157517392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020434-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	78	838	0	ENST00000346085.5:c.3956C>G	p.Ser1319Cys	p.S1319C	ENST00000346085	NM_020732.3	1319	tCt/tGt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	160	1404	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67063655	67063655	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	39	1169	1	ENST00000412916.2:c.104G>C	p.Arg35Pro	p.R35P	ENST00000412916		35	cGg/cCg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178151	56178152	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0020511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	78	626	0	ENST00000399503.3:c.3127dup	p.Ser1043PhefsTer14	p.S1043Ffs*14	ENST00000399503	NM_005921.1	1042	ctt/cTtt																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176523067	176523067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	156	1185	6	ENST00000292408.4:c.1831C>T	p.Arg611Trp	p.R611W	ENST00000292408	NM_213647.1	611	Cgg/Tgg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44733232	44733240	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTAAGGC	AGGTAAGGC	-			P-0020511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	58	719	0	ENST00000377967.4:c.225+1_225+9del		p.X75_splice	ENST00000377967	NM_021140.2	75																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			176	260	1015	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	105	585	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	21	648	3	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	34	884	2	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	85	876	4	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39934037	39934037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	21	916	0	ENST00000378444.4:c.562C>T	p.Arg188Trp	p.R188W	ENST00000378444	NM_001123385.1	188	Cgg/Tgg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	140	843	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	71	998	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																												NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	69	1135	3	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																												NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	62	702	13	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720803	89720804	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			121	21	632	0	ENST00000371953.3:c.955dup	p.Thr319AsnfsTer6	p.T319Nfs*6	ENST00000371953	NM_000314.4	318	-/A																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	71	1249	0	ENST00000320574.5:c.6088delG	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	97	685	0	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30038260	30038260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	25	674	1	ENST00000338641.4:c.433G>A	p.Ala145Thr	p.A145T	ENST00000338641	NM_000268.3	145	Gcc/Acc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72833968	72833968	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			196	134	792	0	ENST00000268489.5:c.3925C>T	p.Arg1309Ter	p.R1309*	ENST00000268489	NM_006885.3	1309	Cga/Tga																																												NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	59	1984	5	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																												NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	86	1164	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																												NEWRECORD																																		
INPPL1	0	MSKCC	GRCh37	11	71939260	71939260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	74	1271	1	ENST00000298229.2:c.209G>A	p.Arg70His	p.R70H	ENST00000298229	NM_001567.3	70	cGc/cAc																																												NEWRECORD																																		
ERF	2077	MSKCC	GRCh37	19	42752695	42752695	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1366176199		P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	89	1106	10	ENST00000222329.4:c.1569del	p.Leu525SerfsTer6	p.L525Sfs*6	ENST00000222329	NM_006494.2	523	ggG/gg																																												NEWRECORD																																		
PRDM14	0	MSKCC	GRCh37	8	70980604	70980604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	28	789	0	ENST00000276594.2:c.773C>T	p.Thr258Met	p.T258M	ENST00000276594	NM_024504.3	258	aCg/aTg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11177130	11177130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	18	704	0	ENST00000361445.4:c.6947G>A	p.Arg2316Gln	p.R2316Q	ENST00000361445	NM_004958.3	2316	cGa/cAa																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43804275	43804275	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	99	848	0	ENST00000372470.3:c.275T>C	p.Val92Ala	p.V92A	ENST00000372470	NM_005373.2	92	gTg/gCg																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64571819	64571819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	117	1367	4	ENST00000337652.1:c.1835G>A	p.Arg612His	p.R612H	ENST00000337652	NM_130803.2	612	cGc/cAc																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90633748	90633748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	115	856	0	ENST00000330062.3:c.336G>C	p.Lys112Asn	p.K112N	ENST00000330062	NM_002168.2	112	aaG/aaC																																												NEWRECORD																																		
MAP2K2	0	MSKCC	GRCh37	19	4101108	4101108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	46	893	0	ENST00000262948.5:c.614G>T	p.Arg205Ile	p.R205I	ENST00000262948	NM_030662.3	205	aGa/aTa																																												NEWRECORD																																		
DNAJB1	0	MSKCC	GRCh37	19	14627582	14627582	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	77	743	2	ENST00000254322.2:c.488del	p.Pro163GlnfsTer21	p.P163Qfs*21	ENST00000254322	NM_006145.1	163	cCa/ca																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142281566	142281566	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	90	1139	0	ENST00000350721.4:c.678A>C	p.Glu226Asp	p.E226D	ENST00000350721	NM_001184.3	226	gaA/gaC																																												NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187447334	187447335	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	31	777	0	ENST00000232014.4:c.858dup	p.Ser287LeufsTer11	p.S287Lfs*11	ENST00000232014	NM_001130845.1	286	-/C																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55133829	55133829	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	15	643	0	ENST00000257290.5:c.1042T>G	p.Ser348Ala	p.S348A	ENST00000257290	NM_006206.4	348	Tcc/Gcc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180040015	180040015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	19	1469	4	ENST00000261937.6:c.3427G>A	p.Ala1143Thr	p.A1143T	ENST00000261937	NM_182925.4	1143	Gcc/Acc																																												NEWRECORD																																		
CDK6	0	MSKCC	GRCh37	7	92355083	92355083	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			230	16	346	0	ENST00000265734.4:c.394G>T	p.Gly132Cys	p.G132C	ENST00000265734	NM_001259.6	132	Ggt/Tgt																																												NEWRECORD																																		
AGO2	0	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	78	1674	0	ENST00000220592.5:c.1805_1806dup	p.Ala603ProfsTer93	p.A603Pfs*93	ENST00000220592	NM_012154.3	602	-/CC																																												NEWRECORD																																		
TRAF2	0	MSKCC	GRCh37	9	139820183	139820183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	35	978	2	ENST00000247668.2:c.1336G>A	p.Ala446Thr	p.A446T	ENST00000247668	NM_021138.3	446	Gcc/Acc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	229	1035	1	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88420192	88420192	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0020515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	260	710	0	ENST00000360948.2:c.2494C>G	p.Pro832Ala	p.P832A	ENST00000360948	NM_001012338.2	832	Cca/Gca																																												NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27202989	27202989	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	54	904	1	ENST00000380036.4:c.2081T>C	p.Ile694Thr	p.I694T	ENST00000380036	NM_000459.3	694	aTc/aCc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	122	714	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	235	730	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			181	79	347	0	ENST00000263967.3:c.1049A>G	p.Asp350Gly	p.D350G	ENST00000263967	NM_006218.2	350	gAc/gGc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174466	112174466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	134	306	0	ENST00000257430.4:c.3175G>A	p.Glu1059Lys	p.E1059K	ENST00000257430	NM_000038.5	1059	Gaa/Aaa																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2214510	2214510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	82	951	0	ENST00000398665.3:c.1838C>T	p.Thr613Met	p.T613M	ENST00000398665	NM_032482.2	613	aCg/aTg																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227661390	227661390	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141094678		P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	130	519	1	ENST00000305123.5:c.2065G>A	p.Val689Ile	p.V689I	ENST00000305123	NM_005544.2	689	Gtc/Atc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436356	52436356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	354	798	0	ENST00000460680.1:c.2138G>A	p.Arg713Gln	p.R713Q	ENST00000460680	NM_004656.3	713	cGg/cAg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174460	112174460	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0020423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			133	128	299	0	ENST00000257430.4:c.3169G>T	p.Glu1057Ter	p.E1057*	ENST00000257430	NM_000038.5	1057	Gaa/Taa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18576930	18576930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	50	935	0	ENST00000266497.5:c.2338C>A	p.His780Asn	p.H780N	ENST00000266497		780	Cac/Aac																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46256362	46256362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	43	816	1	ENST00000371998.3:c.590G>T	p.Cys197Phe	p.C197F	ENST00000371998		197	tGc/tTc																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53247098	53247098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0020492-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	61	485	0	ENST00000375401.3:c.402G>A	p.Trp134Ter	p.W134*	ENST00000375401	NM_004187.3	134	tgG/tgA																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40743859	40743859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	155	813	2	ENST00000373198.4:c.3136C>T	p.Arg1046Cys	p.R1046C	ENST00000373198	NM_133170.3	1046	Cgc/Tgc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180057600	180057600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020491-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	187	1452	3	ENST00000261937.6:c.355C>T	p.Arg119Cys	p.R119C	ENST00000261937	NM_182925.4	119	Cgc/Tgc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	96	873	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0020490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	80	825	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
KMT2A	0	MSKCC	GRCh37	11	118390473	118390473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0020490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	59	819	0	ENST00000534358.1:c.11287C>A	p.Pro3763Thr	p.P3763T	ENST00000534358	NM_005933.3	3763	Cct/Act																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89528598	89528598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0020490-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	84	527	0	ENST00000336596.2:c.2898C>G	p.Ile966Met	p.I966M	ENST00000336596	NM_005233.5	966	atC/atG																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106793	27106793	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	221	910	0	ENST00000324856.7:c.6404T>G	p.Ile2135Ser	p.I2135S	ENST00000324856	NM_006015.4	2135	aTt/aGt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			283	154	1034	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48951074	48951074	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	54	437	1	ENST00000267163.4:c.1236A>T	p.Lys412Asn	p.K412N	ENST00000267163	NM_000321.2	412	aaA/aaT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579534	7579535	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	252	1298	0	ENST00000269305.4:c.152_153del	p.Glu51AlafsTer5	p.E51Afs*5	ENST00000269305	NM_001126112.2	51	gAA/g																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591853	48591853	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	131	842	0	ENST00000342988.3:c.1016T>C	p.Phe339Ser	p.F339S	ENST00000342988	NM_005359.5	339	tTt/tCt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591886	48591886	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	150	862	0	ENST00000342988.3:c.1049T>G	p.Val350Gly	p.V350G	ENST00000342988	NM_005359.5	350	gTt/gGt																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128200082	128200082	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	228	1308	0	ENST00000341105.2:c.1223A>C	p.Lys408Thr	p.K408T	ENST00000341105	NM_032638.4	408	aAg/aCg																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106197573	106197573	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	94	584	0	ENST00000380013.4:c.5906A>C	p.Lys1969Thr	p.K1969T	ENST00000380013	NM_001127208.2	1969	aAg/aCg																																												NEWRECORD																																		
STK19	0	MSKCC	GRCh37	6	31948527	31948527	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	66	363	0	ENST00000375331.2:c.998T>G	p.Leu333Arg	p.L333R	ENST00000375331	NM_004197.1	333	cTt/cGt																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150001366	150001367	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGATTTC			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	89	1027	0	ENST00000253339.5:c.2231_2237dup	p.Val747LysfsTer7	p.V747Kfs*7	ENST00000253339		746	caa/caGAAATCAa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123182920	123182920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0020488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	38	587	0	ENST00000218089.9:c.885T>A	p.His295Gln	p.H295Q	ENST00000218089	NM_001042749.1	295	caT/caA																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	107	938	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16261145	16261145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	180	672	0	ENST00000375759.3:c.8410G>A	p.Ala2804Thr	p.A2804T	ENST00000375759	NM_015001.2	2804	Gcg/Acg																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2154246	2154246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			873	101	1074	1	ENST00000434045.2:c.682C>T	p.Pro228Ser	p.P228S	ENST00000434045	NM_001127598.1	228	Ccc/Tcc																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50920350	50920365	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGAGGTGAGAGGGCC	AGGAGGTGAGAGGGCC	-			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	247	1235	0	ENST00000440232.2:c.3116_3120+11del		p.X1039_splice	ENST00000440232	NM_002691.3	1039																																													NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31023402	31023403	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	162	796	0	ENST00000375687.4:c.2887_2888del	p.Pro963IlefsTer6	p.P963Ifs*6	ENST00000375687	NM_015338.5	963	CCa/a																																												NEWRECORD																																		
DROSHA	0	MSKCC	GRCh37	5	31431706	31431706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	158	867	1	ENST00000344624.3:c.3122C>A	p.Ala1041Asp	p.A1041D	ENST00000344624		1041	gCc/gAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112137082	112137082	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	80	479	0	ENST00000257430.4:c.834+2T>G		p.X278_splice	ENST00000257430	NM_000038.5	278																																													NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170683	112170683	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	111	794	0	ENST00000257430.4:c.1779G>A	p.Trp593Ter	p.W593*	ENST00000257430	NM_000038.5	593	tgG/tgA																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119070	70119089	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCTCCGGCATGAGCGAGG	CTCCTCCGGCATGAGCGAGG	A			P-0020487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	45	718	1	ENST00000245479.2:c.642_661delinsA	p.Ser215CysfsTer32	p.S215Cfs*32	ENST00000245479	NM_000346.3	214	tcCTCCTCCGGCATGAGCGAGGtg/tcAtg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0020493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	37	1018	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0020493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	20	621	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0020493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	36	1134	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0020493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	97	767	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45871940	45871940	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142462393		P-0020493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	52	1124	3	ENST00000391945.4:c.308C>T	p.Pro103Leu	p.P103L	ENST00000391945	NM_000400.3	103	cCg/cTg																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436802	52436802	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0020494-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	238	1176	0	ENST00000460680.1:c.1976del	p.Lys659SerfsTer33	p.K659Sfs*33	ENST00000460680	NM_004656.3	659	aAg/ag																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			477	643	779	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
NTRK1	4914	MSKCC	GRCh37	1	156846342	156846342	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs746049437		P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			945	568	730	1	ENST00000524377.1:c.1783G>A	p.Gly595Arg	p.G595R	ENST00000524377	NM_002529.3	595	Ggg/Agg																																												NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	213403244	213403244	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs748663394		P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			892	498	777	0	ENST00000342788.4:c.11C>A	p.Ala4Glu	p.A4E	ENST00000342788	NM_005235.2	4	gCg/gAg																																												NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372070	55372070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			721	239	345	1	ENST00000297316.4:c.760G>A	p.Ala254Thr	p.A254T	ENST00000297316	NM_022454.3	254	Gcg/Acg																																												NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	36882073	36882073	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1372104492		P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			969	538	732	1	ENST00000358127.4:c.940G>A	p.Gly314Arg	p.G314R	ENST00000358127	NM_001280556.1	314	Ggg/Agg																																												NEWRECORD																																		
ANKRD11	29123	MSKCC	GRCh37	16	89346901	89346901	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1455558820		P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			684	377	560	0	ENST00000301030.4:c.6049G>A	p.Ala2017Thr	p.A2017T	ENST00000301030	NM_001256183.1	2017	Gcc/Acc																																												NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46256445	46256445	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	761	1056	0	ENST00000371998.3:c.673C>T	p.Gln225Ter	p.Q225*	ENST00000371998		225	Cag/Tag																																												NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39930942	39930942	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	687	982	0	ENST00000378444.4:c.2999T>C	p.Met1000Thr	p.M1000T	ENST00000378444	NM_001123385.1	1000	aTg/aCg																																												NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44923000	44923000	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139486036		P-0013121-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	610	950	0	ENST00000377967.4:c.1861C>T	p.Arg621Cys	p.R621C	ENST00000377967	NM_021140.2	621	Cgc/Tgc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	42	449	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180045814	180045814	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	24	514	0	ENST00000261937.6:c.2957C>G	p.Ser986Trp	p.S986W	ENST00000261937	NM_182925.4	986	tCg/tGg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151845985	151845985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009137-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	32	463	0	ENST00000262189.6:c.13027G>A	p.Glu4343Lys	p.E4343K	ENST00000262189	NM_170606.2	4343	Gaa/Aaa																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93965672	93965672	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	104	1039	0	ENST00000369303.4:c.2256G>T	p.Met752Ile	p.M752I	ENST00000369303	NM_004440.3	752	atG/atT																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8507431	8507431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	59	501	1	ENST00000356435.5:c.1547C>T	p.Pro516Leu	p.P516L	ENST00000356435		516	cCa/cTa																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41737177	41737177	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	317	847	0	ENST00000301178.4:c.757T>A	p.Tyr253Asn	p.Y253N	ENST00000301178	NM_021913.4	253	Tac/Aac																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41101044	41101044	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	88	604	0	ENST00000373198.4:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000373198	NM_133170.3	438	Gag/Tag																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412389	139412427	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGGCGAGGGCACACGGGTGAGAGGCTGCTCCAGGCAC	CCTGGCGAGGGCACACGGGTGAGAGGCTGCTCCAGGCAC	-			P-0012257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	18	298	0	ENST00000277541.6:c.1256-38_1256del		p.X419_splice	ENST00000277541	NM_017617.3	419																																													NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183833	10183833	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	103	220	0	ENST00000256474.2:c.302T>G	p.Leu101Arg	p.L101R	ENST00000256474	NM_000551.3	101	cTg/cGg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53225202	53225202	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	130	217	0	ENST00000375401.3:c.3016A>G	p.Ile1006Val	p.I1006V	ENST00000375401	NM_004187.3	1006	Atc/Gtc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52702527	52702527	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	58	360	0	ENST00000394830.3:c.371del	p.Lys124SerfsTer50	p.K124Sfs*50	ENST00000394830	NM_018313.4	124	aAg/ag																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53228296	53228296	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001659-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	120	213	0	ENST00000375401.3:c.2106del	p.Asp702GlufsTer62	p.D702Efs*62	ENST00000375401	NM_004187.3	702	gaT/ga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0001676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	138	510	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0001676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	121	426	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	89	476	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																												NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	29451784	29451784	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772809305		P-0001676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			748	87	540	2	ENST00000389048.3:c.2781del	p.Cys928AlafsTer11	p.C928Afs*11	ENST00000389048	NM_004304.4	927	ggG/gg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	182	530	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	207	308	1	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40713469	40713469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	120	168	1	ENST00000373198.4:c.4046G>A	p.Arg1349His	p.R1349H	ENST00000373198	NM_133170.3	1349	cGt/cAt																																												NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133738360	133738360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	74	166	0	ENST00000318560.5:c.760G>A	p.Gly254Arg	p.G254R	ENST00000318560	NM_005157.4	254	Ggg/Agg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49445125	49445125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	52	112	0	ENST00000301067.7:c.2341G>A	p.Ala781Thr	p.A781T	ENST00000301067	NM_003482.3	781	Gct/Act																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41265743	41266365	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGT	CACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGT	-			P-0004154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	61	20	0	ENST00000349496.5:c.13+174_242-77del		p.X5_splice	ENST00000349496	NM_001904.3	5																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579567	7579573	+	frameshift_variant	Frame_Shift_Del	DEL	CATTGCT	CATTGCT	-			P-0004154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	137	210	0	ENST00000269305.4:c.114_120del	p.Ala39MetfsTer3	p.A39Mfs*3	ENST00000269305	NM_001126112.2	38	caAGCAATG/ca																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	442810	442811	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	57	220	0	ENST00000399788.2:c.1495dupG	p.Glu499GlyfsTer29	p.E499Gfs*29	ENST00000399788	NM_001042603.1	499	gag/gGag																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0004045-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	234	384	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004045-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	284	576	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa																																												NEWRECORD																																		
SDHAF2	0	MSKCC	GRCh37	11	61197647	61197647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004045-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			844	159	547	0	ENST00000301761.2:c.29C>T	p.Ser10Leu	p.S10L	ENST00000301761	NM_017841.2	10	tCg/tTg																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61715407	61715407	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004045-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1008	123	421	0	ENST00000401558.2:c.2207-1G>A		p.X736_splice	ENST00000401558	NM_003400.3	736																																													NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131976439	131976439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004045-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	106	369	0	ENST00000265335.6:c.3694G>A	p.Glu1232Lys	p.E1232K	ENST00000265335		1232	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577519	7577519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004045-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	100	203	0	ENST00000269305.4:c.762C>G	p.Ile254Met	p.I254M	ENST00000269305	NM_001126112.2	254	atC/atG																																												NEWRECORD																																		
U2AF1	0	MSKCC	GRCh37	21	44514647	44514647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	81	278	0	ENST00000291552.4:c.509A>G	p.Asn170Ser	p.N170S	ENST00000291552	NM_006758.2	170	aAc/aGc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			25	61	245	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																												NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	56	183	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44942719	44942719	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			46	49	373	0	ENST00000377967.4:c.3299T>C	p.Leu1100Pro	p.L1100P	ENST00000377967	NM_021140.2	1100	cTa/cCa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952146	178952147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	57	214	0	ENST00000263967.3:c.3203dupA	p.Asn1068LysfsTer5	p.N1068Kfs*5	ENST00000263967	NM_006218.2	1067	-/A																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49418729	49418731	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GCT	GCT	-			P-0003690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	51	185	0	ENST00000301067.7:c.15785-2_15785del		p.X5262_splice	ENST00000301067	NM_003482.3	5262																																													NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49433091	49433092	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	62	338	0	ENST00000301067.7:c.8279dup	p.Leu2761ProfsTer8	p.L2761Pfs*8	ENST00000301067	NM_003482.3	2760	atc/atTc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41556651	41556652	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	50	185	0	ENST00000263253.7:c.3599dup	p.Cys1201LeufsTer2	p.C1201Lfs*2	ENST00000263253	NM_001429.3	1199	cat/caTt																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44923055	44923056	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0003690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	35	295	0	ENST00000377967.4:c.1916_1917insTA	p.Gln641LeufsTer51	p.Q641Lfs*51	ENST00000377967	NM_021140.2	639	tcc/tcTAc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106936	27106936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	122	195	0	ENST00000324856.7:c.6547C>T	p.Arg2183Cys	p.R2183C	ENST00000324856	NM_006015.4	2183	Cgt/Tgt																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	175956147	175956147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	161	435	0	ENST00000367669.3:c.2065A>G	p.Lys689Glu	p.K689E	ENST00000367669	NM_022457.5	689	Aaa/Gaa																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	123	280	2	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	124	263	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249160	55249160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	169	255	2	ENST00000275493.2:c.2458C>T	p.Gln820Ter	p.Q820*	ENST00000275493	NM_005228.3	820	Cag/Tag																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38287386	38287386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	143	201	1	ENST00000425967.3:c.271C>T	p.Arg91Trp	p.R91W	ENST00000425967	NM_001174067.1	91	Cgg/Tgg																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88683390	88683390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	92	218	1	ENST00000372037.3:c.1513G>A	p.Ala505Thr	p.A505T	ENST00000372037	NM_004329.2	505	Gcc/Acc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89685316	89685316	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	97	234	0	ENST00000371953.3:c.209+2T>C		p.X70_splice	ENST00000371953	NM_000314.4	70																																													NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112221	115112221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	104	145	0	ENST00000257566.3:c.1519C>A	p.Leu507Met	p.L507M	ENST00000257566	NM_016569.3	507	Ctg/Atg																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457705	67457705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	223	291	2	ENST00000327367.4:c.515C>A	p.Pro172His	p.P172H	ENST00000327367	NM_005902.3	172	cCc/cAc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88678385	88678385	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	395	743	1	ENST00000360948.2:c.1151T>G	p.Leu384Arg	p.L384R	ENST00000360948	NM_001012338.2	384	cTg/cGg																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88679712	88679712	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	157	308	0	ENST00000360948.2:c.751A>T	p.Ile251Phe	p.I251F	ENST00000360948	NM_001012338.2	251	Atc/Ttc																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	209	373	3	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11098422	11098422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	118	155	0	ENST00000344626.4:c.940G>A	p.Ala314Thr	p.A314T	ENST00000344626	NM_003072.3	314	Gcg/Acg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70344077	70344077	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	338	850	3	ENST00000374080.3:c.1813C>T	p.Arg605Ter	p.R605*	ENST00000374080		605	Cga/Tga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	170	288	2	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65330629	65330630	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	177	388	0	ENST00000342505.4:c.1016dupA	p.Asn339LysfsTer2	p.N339Kfs*2	ENST00000342505	NM_002227.2	339	aat/aaAt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	25	34	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																												NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	172	330	11	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	163	429	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431722	49431722	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	258	390	0	ENST00000301067.7:c.9417del	p.Lys3140ArgfsTer2	p.K3140Rfs*2	ENST00000301067	NM_003482.3	3139	ccC/cc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15281181	15281181	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	83	493	0	ENST00000263388.2:c.5075del	p.Gly1692AlafsTer13	p.G1692Afs*13	ENST00000263388	NM_000435.2	1692	gGc/gc																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	49	134	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	340	653	0	ENST00000378444.4:c.3621delA	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	110	252	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	54	151	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	122	302	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	175996746	175996746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	124	486	1	ENST00000367669.3:c.1691G>A	p.Ser564Asn	p.S564N	ENST00000367669	NM_022457.5	564	aGc/aAc																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31376659	31376659	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	53	255	0	ENST00000328111.2:c.655-1G>T		p.X219_splice	ENST00000328111	NM_006892.3	219																																													NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11288925	11288925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	123	350	0	ENST00000361445.4:c.2830G>A	p.Asp944Asn	p.D944N	ENST00000361445	NM_004958.3	944	Gat/Aat																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106975	27106976	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	82	278	0	ENST00000324856.7:c.6587dup	p.Phe2198LeufsTer27	p.F2198Lfs*27	ENST00000324856	NM_006015.4	2196	ctg/cTtg																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36932865	36932865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1457	183	703	0	ENST00000361632.4:c.2006G>T	p.Ser669Ile	p.S669I	ENST00000361632		669	aGc/aTc																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435677	18435677	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	59	208	0	ENST00000266497.5:c.662G>A	p.Trp221Ter	p.W221*	ENST00000266497		221	tGg/tAg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246365	46246365	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	231	388	0	ENST00000334344.6:c.4461del	p.Asp1488ThrfsTer28	p.D1488Tfs*28	ENST00000334344	NM_152641.2	1487	Ccc/cc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56478893	56478893	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1541	173	600	1	ENST00000267101.3:c.349A>T	p.Ile117Phe	p.I117F	ENST00000267101	NM_001982.3	117	Atc/Ttc																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57864768	57864768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1428	470	715	0	ENST00000228682.2:c.2245G>T	p.Gly749Cys	p.G749C	ENST00000228682	NM_005269.2	749	Ggc/Tgc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112047	115112047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	79	369	0	ENST00000257566.3:c.1693G>T	p.Ala565Ser	p.A565S	ENST00000257566	NM_016569.3	565	Gct/Tct																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95566212	95566212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	82	441	0	ENST00000343455.3:c.4111G>T	p.Val1371Leu	p.V1371L	ENST00000343455	NM_177438.2	1371	Gtg/Ttg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29557401	29557401	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	108	236	0	ENST00000358273.4:c.3113+1G>T		p.X1038_splice	ENST00000358273	NM_001042492.2	1038																																													NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56436001	56436001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	36	241	0	ENST00000407977.2:c.1136A>T	p.Gln379Leu	p.Q379L	ENST00000407977		379	cAg/cTg																																												NEWRECORD																																		
RAD51C	0	MSKCC	GRCh37	17	56798141	56798141	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	218	534	0	ENST00000337432.4:c.872A>T	p.Asp291Val	p.D291V	ENST00000337432	NM_058216.2	291	gAt/gTt																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59878765	59878765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	153	372	0	ENST00000259008.2:c.989G>T	p.Gly330Val	p.G330V	ENST00000259008	NM_032043.2	330	gGg/gTg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2216598	2216598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	172	419	1	ENST00000398665.3:c.2242G>T	p.Val748Leu	p.V748L	ENST00000398665	NM_032482.2	748	Gtg/Ttg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10600330	10600330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	183	425	0	ENST00000171111.5:c.1525G>T	p.Gly509Trp	p.G509W	ENST00000171111	NM_203500.1	509	Ggg/Tgg																																												NEWRECORD																																		
BBC3	0	MSKCC	GRCh37	19	47724980	47724980	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1369	151	547	0	ENST00000449228.1:c.764G>C	p.Gly255Ala	p.G255A	ENST00000449228	NM_001127240.2	255	gGg/gCg																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50905993	50905993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1228	179	557	0	ENST00000440232.2:c.965G>T	p.Arg322Leu	p.R322L	ENST00000440232	NM_002691.3	322	cGc/cTc																																												NEWRECORD																																		
CXCR4	0	MSKCC	GRCh37	2	136872776	136872776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2166	142	809	0	ENST00000241393.3:c.722C>T	p.Thr241Ile	p.T241I	ENST00000241393	NM_003467.2	241	aCa/aTa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212295774	212295774	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	82	492	0	ENST00000342788.4:c.2539C>G	p.Arg847Gly	p.R847G	ENST00000342788	NM_005235.2	847	Cgt/Ggt																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546635	9546635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1320	291	605	2	ENST00000353224.5:c.1387G>T	p.Val463Leu	p.V463L	ENST00000353224	NM_177990.2	463	Gta/Tta																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40735452	40735452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	158	557	2	ENST00000373198.4:c.3421C>A	p.Gln1141Lys	p.Q1141K	ENST00000373198	NM_133170.3	1141	Caa/Aaa																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40735461	40735461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	98	538	0	ENST00000373198.4:c.3412C>A	p.Leu1138Ile	p.L1138I	ENST00000373198	NM_133170.3	1138	Ctc/Atc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40790149	40790149	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	56	196	0	ENST00000373198.4:c.2582C>A	p.Thr861Asn	p.T861N	ENST00000373198	NM_133170.3	861	aCc/aAc																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259206	89259206	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	45	361	0	ENST00000336596.2:c.350A>T	p.Lys117Met	p.K117M	ENST00000336596	NM_005233.5	117	aAg/aTg																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612212	189612212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	96	367	0	ENST00000264731.3:c.1964G>T	p.Arg655Leu	p.R655L	ENST00000264731	NM_003722.4	655	cGa/cTa																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55946301	55946301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	60	269	0	ENST00000263923.4:c.3878C>A	p.Ser1293Tyr	p.S1293Y	ENST00000263923	NM_002253.2	1293	tCt/tAt																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66356209	66356209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	79	422	0	ENST00000273854.3:c.1288G>T	p.Asp430Tyr	p.D430Y	ENST00000273854	NM_004439.5	430	Gat/Tat																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35871262	35871262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	146	332	0	ENST00000303115.3:c.484G>T	p.Val162Phe	p.V162F	ENST00000303115	NM_002185.3	162	Gtt/Ttt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112179493	112179493	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	131	569	1	ENST00000257430.4:c.8202A>T	p.Lys2734Asn	p.K2734N	ENST00000257430	NM_000038.5	2734	aaA/aaT																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149457684	149457684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1050	84	485	1	ENST00000286301.3:c.720C>A	p.Asn240Lys	p.N240K	ENST00000286301	NM_005211.3	240	aaC/aaA																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149503812	149503812	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	120	472	0	ENST00000261799.4:c.2023+1G>T		p.X675_splice	ENST00000261799	NM_002609.3	675																																													NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112041076	112041076	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1446	78	735	0	ENST00000368678.4:c.179G>T	p.Gly60Val	p.G60V	ENST00000368678		60	gGa/gTa																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41739732	41739732	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1669	187	786	0	ENST00000242208.4:c.241del	p.Ala81ArgfsTer4	p.A81Rfs*4	ENST00000242208	NM_002192.2	81	Gcg/cg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151842373	151842373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	75	280	0	ENST00000262189.6:c.14039G>T	p.Gly4680Val	p.G4680V	ENST00000262189	NM_170606.2	4680	gGg/gTg																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371713	55371713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	65	287	0	ENST00000297316.4:c.403T>A	p.Tyr135Asn	p.Y135N	ENST00000297316	NM_022454.3	135	Tac/Aac																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372304	55372304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	76	252	0	ENST00000297316.4:c.994C>A	p.Gln332Lys	p.Q332K	ENST00000297316	NM_022454.3	332	Cag/Aag																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8331585	8331585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	139	549	0	ENST00000356435.5:c.5531G>A	p.Cys1844Tyr	p.C1844Y	ENST00000356435		1844	tGc/tAc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8341847	8341847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	92	565	0	ENST00000356435.5:c.4793C>A	p.Thr1598Lys	p.T1598K	ENST00000356435		1598	aCa/aAa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8499774	8499774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	67	478	0	ENST00000356435.5:c.2195G>T	p.Trp732Leu	p.W732L	ENST00000356435		732	tGg/tTg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70349009	70349009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1340	128	646	1	ENST00000374080.3:c.3521G>T	p.Arg1174Leu	p.R1174L	ENST00000374080		1174	cGc/cTc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	440	634	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149509364	149509364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	283	439	1	ENST00000261799.4:c.1535A>G	p.Asn512Ser	p.N512S	ENST00000261799	NM_002609.3	512	aAc/aGc																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7980435	7980435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002961-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	91	441	0	ENST00000319144.4:c.1148C>T	p.Thr383Met	p.T383M	ENST00000319144	NM_001139.2	383	aCg/aTg																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15366981	15366982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002961-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	83	724	1	ENST00000263377.2:c.1644dupA	p.Glu549ArgfsTer13	p.E549Rfs*13	ENST00000263377	NM_058243.2	548	-/A																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	152	431	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99152219	99152219	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	29	360	0	ENST00000074304.5:c.298A>T	p.Ser100Cys	p.S100C	ENST00000074304	NM_001134224.1	100	Agt/Tgt																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111885945	111885945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1404	85	565	1	ENST00000341259.2:c.1567G>A	p.Glu523Lys	p.E523K	ENST00000341259	NM_005475.2	523	Gag/Aag																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57752411	57752412	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0009460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	28	185	0	ENST00000274289.3:c.1161_1162delAG	p.Arg387SerfsTer3	p.R387Sfs*3	ENST00000274289	NM_006622.3	387	agAGtg/agtg																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	23	329	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25457242	25457242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147001633		P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	28	260	0	ENST00000264709.3:c.2645G>A	p.Arg882His	p.R882H	ENST00000264709	NM_175629.2	882	cGc/cAc																																												NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	10	76	1	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164805	36164805	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	34	273	0	ENST00000300305.3:c.1070delC	p.Pro357ArgfsTer237	p.P357Rfs*237	ENST00000300305		357	cCg/cg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100425	8100425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	79	436	0	ENST00000346208.3:c.404delC	p.Pro135ArgfsTer60	p.P135Rfs*60	ENST00000346208		133	taC/ta																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	46	290	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	46	290	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac																																												NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	107	424	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140476733	140476733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	27	445	0	ENST00000288602.6:c.1673G>A	p.Arg558Gln	p.R558Q	ENST00000288602	NM_004333.4	558	cGa/cAa																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	31	354	1	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46714230	46714230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	37	317	0	ENST00000371975.4:c.50G>A	p.Gly17Asp	p.G17D	ENST00000371975	NM_003579.3	17	gGc/gAc																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48032104	48032104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	24	478	1	ENST00000234420.5:c.3494G>A	p.Cys1165Tyr	p.C1165Y	ENST00000234420	NM_000179.2	1165	tGc/tAc																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99155421	99155421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	40	374	0	ENST00000074304.5:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000074304	NM_001134224.1	216	cGa/cAa																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204736176	204736176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	30	563	1	ENST00000302823.3:c.533G>A	p.Ser178Asn	p.S178N	ENST00000302823	NM_005214.4	178	aGc/aAc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713853	30713853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	36	269	0	ENST00000359013.4:c.1253G>A	p.Cys418Tyr	p.C418Y	ENST00000359013	NM_001024847.2	418	tGc/tAc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134514507	134514507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	69	380	0	ENST00000398015.3:c.34G>T	p.Ala12Ser	p.A12S	ENST00000398015	NM_004441.4	12	Gca/Tca																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134851765	134851765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	44	280	0	ENST00000398015.3:c.1171G>A	p.Val391Ile	p.V391I	ENST00000398015	NM_004441.4	391	Gtc/Atc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142226865	142226865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	21	447	1	ENST00000350721.4:c.4939C>T	p.Arg1647Cys	p.R1647C	ENST00000350721	NM_001184.3	1647	Cgc/Tgc																																												NEWRECORD																																		
PHOX2B	0	MSKCC	GRCh37	4	41747979	41747979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	20	57	0	ENST00000226382.2:c.790G>T	p.Ala264Ser	p.A264S	ENST00000226382	NM_003924.3	264	Gct/Tct																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106197443	106197443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	42	541	0	ENST00000380013.4:c.5776C>T	p.Arg1926Cys	p.R1926C	ENST00000380013	NM_001127208.2	1926	Cgt/Tgt																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288891	33288891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	29	155	0	ENST00000374542.5:c.661G>A	p.Ala221Thr	p.A221T	ENST00000374542	NM_001141970.1	221	Gca/Aca																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527648	157527648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	31	300	0	ENST00000346085.5:c.5373A>G	p.Ile1791Met	p.I1791M	ENST00000346085	NM_020732.3	1791	atA/atG																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8319959	8319959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	27	289	1	ENST00000356435.5:c.5542G>A	p.Val1848Ile	p.V1848I	ENST00000356435		1848	Gtt/Att																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139407988	139407988	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	49	212	0	ENST00000277541.6:c.2209T>C	p.Tyr737His	p.Y737H	ENST00000277541	NM_017617.3	737	Tac/Cac																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333671	70333671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	18	385	0	ENST00000373644.4:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000373644	NM_030625.2	526	Gct/Act																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88649934	88649934	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	21	370	0	ENST00000372037.3:c.183C>A	p.Cys61Ter	p.C61*	ENST00000372037	NM_004329.2	61	tgC/tgA																																												NEWRECORD																																		
CHEK1	0	MSKCC	GRCh37	11	125496668	125496668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	29	379	1	ENST00000428830.2:c.5C>T	p.Ala2Val	p.A2V	ENST00000428830	NM_001114121.2	2	gCa/gTa																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	416994	416994	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	28	430	0	ENST00000399788.2:c.3556A>G	p.Asn1186Asp	p.N1186D	ENST00000399788	NM_001042603.1	1186	Aac/Gac																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49424459	49424459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	49	364	0	ENST00000301067.7:c.13764G>T	p.Gln4588His	p.Q4588H	ENST00000301067	NM_003482.3	4588	caG/caT																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49425728	49425728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	32	303	0	ENST00000301067.7:c.12760C>T	p.Gln4254Ter	p.Q4254*	ENST00000301067	NM_003482.3	4254	Cag/Tag																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	347941	347941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	101	391	2	ENST00000262320.3:c.1565C>T	p.Ala522Val	p.A522V	ENST00000262320	NM_003502.3	522	gCg/gTg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89350069	89350069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1361	120	647	0	ENST00000301030.4:c.2881C>T	p.Arg961Cys	p.R961C	ENST00000301030	NM_001256183.1	961	Cgc/Tgc																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7983200	7983200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	65	400	0	ENST00000319144.4:c.814G>A	p.Val272Ile	p.V272I	ENST00000319144	NM_001139.2	272	Gtc/Atc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5244209	5244209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	63	269	0	ENST00000357368.4:c.1273G>T	p.Ala425Ser	p.A425S	ENST00000357368	NM_002850.3	425	Gcc/Tcc																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7163174	7163174	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	59	462	0	ENST00000302850.5:c.1898A>G	p.Asn633Ser	p.N633S	ENST00000302850	NM_000208.2	633	aAc/aGc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11098434	11098434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	48	224	0	ENST00000344626.4:c.952G>A	p.Val318Ile	p.V318I	ENST00000344626	NM_003072.3	318	Gtc/Atc																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17953306	17953306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	71	275	0	ENST00000458235.1:c.680G>A	p.Cys227Tyr	p.C227Y	ENST00000458235	NM_000215.3	227	tGc/tAc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42797344	42797344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	66	311	0	ENST00000575354.2:c.3706C>T	p.Pro1236Ser	p.P1236S	ENST00000575354	NM_015125.3	1236	Cca/Tca																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30051643	30051643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	23	429	0	ENST00000338641.4:c.577G>A	p.Ala193Thr	p.A193T	ENST00000338641	NM_000268.3	193	Gca/Aca																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73335923	73335923	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	10	266	0	ENST00000377767.4:c.2372del	p.Leu791TrpfsTer14	p.L791Wfs*14	ENST00000377767	NM_014953.3	791	tTg/tg																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15354152	15354152	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	12	98	1	ENST00000263377.2:c.2728delC	p.Gln910LysfsTer39	p.Q910Kfs*39	ENST00000263377	NM_058243.2	910	Caa/aa																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32172062	32172063	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	57	423	0	ENST00000375023.3:c.2969dup	p.His991ProfsTer14	p.H991Pfs*14	ENST00000375023	NM_004557.3	990	ttc/ttTc																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100998627	100998629	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	98	371	1	ENST00000325455.5:c.1173_1175del	p.Glu392del	p.E392del	ENST00000325455	NM_001202474.3	391	gaGGAa/gaa																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88659789	88659789	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	33	427	0	ENST00000372037.3:c.441delT	p.Phe147LeufsTer18	p.F147Lfs*18	ENST00000372037	NM_004329.2	146	Ttt/tt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32910923	32910923	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	50	825	0	ENST00000380152.3:c.2435del	p.Asn812IlefsTer13	p.N812Ifs*13	ENST00000380152		811	Aaa/aa																																												NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063359	67063359	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	54	262	0	ENST00000412916.2:c.54del	p.Phe18LeufsTer4	p.F18Lfs*4	ENST00000412916		17	Ttt/tt																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93607788	93607789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	19	500	0	ENST00000375746.1:c.496dupA	p.Met166AsnfsTer14	p.M166Nfs*14	ENST00000375746	NM_001174167.1	164	gaa/gAaa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332471	70332471	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	34	497	3	ENST00000373644.4:c.380delA	p.Lys127ArgfsTer8	p.K127Rfs*8	ENST00000373644	NM_030625.2	126	Aaa/aa																																												NEWRECORD																																		
TNFRSF14	0	MSKCC	GRCh37	1	2493227	2493228	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0007831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	78	431	0	ENST00000355716.4:c.669_670del	p.Ile223MetfsTer10	p.I223Mfs*10	ENST00000355716	NM_003820.2	223	ATa/a																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579575	7579575	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	550	388	1	ENST00000269305.4:c.112C>T	p.Gln38Ter	p.Q38*	ENST00000269305	NM_001126112.2	38	Caa/Taa																																												NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	595	537	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458310	120458310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	180	351	0	ENST00000256646.2:c.7035G>T	p.Met2345Ile	p.M2345I	ENST00000256646	NM_024408.3	2345	atG/atT																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25965216	25965216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	218	500	1	ENST00000435504.4:c.3990G>A	p.Met1330Ile	p.M1330I	ENST00000435504		1330	atG/atA																																												NEWRECORD																																		
TMEM127	0	MSKCC	GRCh37	2	96931046	96931046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	62	130	0	ENST00000258439.3:c.74A>G	p.Lys25Arg	p.K25R	ENST00000258439	NM_001193304.2	25	aAg/aGg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539324	187539324	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	198	523	0	ENST00000441802.2:c.8416A>T	p.Ser2806Cys	p.S2806C	ENST00000441802	NM_005245.3	2806	Agc/Tgc																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	224520	224520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	111	217	0	ENST00000264932.6:c.196G>C	p.Val66Leu	p.V66L	ENST00000264932	NM_004168.2	66	Gtg/Ctg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112178662	112178662	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	178	505	0	ENST00000257430.4:c.7371G>C	p.Glu2457Asp	p.E2457D	ENST00000257430	NM_000038.5	2457	gaG/gaC																																												NEWRECORD																																		
HIST1H3A	0	MSKCC	GRCh37	6	26020874	26020874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1446	413	1166	0	ENST00000357647.3:c.157C>T	p.Arg53Cys	p.R53C	ENST00000357647	NM_003529.2	53	Cgc/Tgc																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26032169	26032169	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	650	811	2	ENST00000244661.2:c.120C>A	p.His40Gln	p.H40Q	ENST00000244661	NM_003537.3	40	caC/caA																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117710984	117710984	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	193	178	0	ENST00000368508.3:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000368508	NM_002944.2	430	Ggc/Tgc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509427	106509427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	1478	652	0	ENST00000359195.3:c.1421T>A	p.Leu474His	p.L474H	ENST00000359195	NM_002649.2	474	cTc/cAc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145741242	145741242	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	520	631	0	ENST00000428558.2:c.1164G>C	p.Glu388Asp	p.E388D	ENST00000428558	NM_004260.3	388	gaG/gaC																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115111970	115111970	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	199	258	0	ENST00000257566.3:c.1770G>C	p.Gln590His	p.Q590H	ENST00000257566	NM_016569.3	590	caG/caC																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88472468	88472468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	228	573	1	ENST00000360948.2:c.2087G>T	p.Gly696Val	p.G696V	ENST00000360948	NM_001012338.2	696	gGg/gTg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993518	72993518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1349	403	797	1	ENST00000268489.5:c.527G>T	p.Gly176Val	p.G176V	ENST00000268489	NM_006885.3	176	gGc/gTc																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70118883	70118883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	632	629	0	ENST00000245479.2:c.455G>C	p.Arg152Pro	p.R152P	ENST00000245479	NM_000346.3	152	cGg/cCg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78704391	78704391	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	255	484	0	ENST00000306801.3:c.539A>G	p.Tyr180Cys	p.Y180C	ENST00000306801	NM_020761.2	180	tAt/tGt																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39623724	39623724	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	223	582	3	ENST00000262039.4:c.2131G>T	p.Glu711Ter	p.E711*	ENST00000262039	NM_002647.2	711	Gag/Tag																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10600045	10600045	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	363	334	0	ENST00000171111.5:c.1532-1G>T		p.X511_splice	ENST00000171111	NM_203500.1	511																																													NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40735500	40735500	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	271	504	1	ENST00000373198.4:c.3373A>T	p.Asn1125Tyr	p.N1125Y	ENST00000373198	NM_133170.3	1125	Aat/Tat																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101460	27101460	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	290	602	0	ENST00000324856.7:c.4742del	p.His1581ProfsTer31	p.H1581Pfs*31	ENST00000324856	NM_006015.4	1581	cAc/cc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971096	21971096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	102	214	0	ENST00000304494.5:c.262delG	p.Glu88ArgfsTer58	p.E88Rfs*58	ENST00000304494	NM_000077.4	88	Gag/ag																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971096	21971096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	102	214	0	ENST00000304494.5:c.262delG	p.Glu88ArgfsTer58	p.E88Rfs*58	ENST00000304494	NM_000077.4	88	Gag/ag																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971096	21971096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	102	214	0	ENST00000304494.5:c.262delG	p.Glu88ArgfsTer58	p.E88Rfs*58	ENST00000304494	NM_000077.4	88	Gag/ag																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68856093	68856093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			15	631	541	0	ENST00000261769.5:c.1901C>T	p.Ala634Val	p.A634V	ENST00000261769	NM_004360.3	634	gCg/gTg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542332	187542332	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			15	413	339	0	ENST00000441802.2:c.5408C>G	p.Ser1803Ter	p.S1803*	ENST00000441802	NM_005245.3	1803	tCa/tGa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578484	7578485	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			41	624	508	0	ENST00000269305.4:c.445dup	p.Ser149PhefsTer32	p.S149Ffs*32	ENST00000269305	NM_001126112.2	149	tcc/tTcc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3786758	3786758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			833	731	671	2	ENST00000262367.5:c.4453C>T	p.His1485Tyr	p.H1485Y	ENST00000262367	NM_004380.2	1485	Cat/Tat																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150004625	150004625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1359	108	621	0	ENST00000253339.5:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000253339		534	Gag/Aag																																												NEWRECORD																																		
MYD88	0	MSKCC	GRCh37	3	38181377	38181377	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			553	505	427	0	ENST00000396334.3:c.390C>G	p.Ile130Met	p.I130M	ENST00000396334	NM_002468.4	130	atC/atG																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49405872	49405872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			782	691	621	0	ENST00000418115.1:c.266C>G	p.Pro89Arg	p.P89R	ENST00000418115	NM_001664.2	89	cCt/cGt																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55153624	55153624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			723	758	573	0	ENST00000257290.5:c.2590C>T	p.Pro864Ser	p.P864S	ENST00000257290	NM_006206.4	864	Cct/Tct																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38966814	38966814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			369	362	305	0	ENST00000357387.3:c.1228G>C	p.Glu410Gln	p.E410Q	ENST00000357387	NM_152756.3	410	Gaa/Caa																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32180964	32180964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			672	611	539	0	ENST00000375023.3:c.2386G>T	p.Gly796Cys	p.G796C	ENST00000375023	NM_004557.3	796	Ggc/Tgc																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117868486	117868486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			2277	326	523	0	ENST00000297338.2:c.856C>A	p.Pro286Thr	p.P286T	ENST00000297338	NM_006265.2	286	Cca/Aca																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63851515	63851515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			749	54	289	0	ENST00000279873.7:c.2293G>C	p.Glu765Gln	p.E765Q	ENST00000279873	NM_032199.2	765	Gag/Cag																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	11905397	11905397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			15	448	327	2	ENST00000396373.4:c.47C>T	p.Ser16Leu	p.S16L	ENST00000396373	NM_001987.4	16	tCa/tTa																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90634877	90634877	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			556	474	451	0	ENST00000330062.3:c.116-1G>C		p.X39_splice	ENST00000330062	NM_002168.2	39																																													NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11170805	11170805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007129-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			784	300	448	0	ENST00000344626.4:c.4853G>A	p.Arg1618Gln	p.R1618Q	ENST00000344626	NM_003072.3	1618	cGa/cAa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	29	381	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49030367	49030368	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	31	332	0	ENST00000267163.4:c.1848dupA	p.Gly617ArgfsTer36	p.G617Rfs*36	ENST00000267163	NM_000321.2	614	-/A																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41726677	41726677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	54	484	0	ENST00000301178.4:c.222G>C	p.Gln74His	p.Q74H	ENST00000301178	NM_021913.4	74	caG/caC																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578493	7578500	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGCTG	CACAGCTG	-			P-0009911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	48	427	0	ENST00000269305.4:c.430_437del	p.Gln144GlyfsTer2	p.Q144Gfs*2	ENST00000269305	NM_001126112.2	144	CAGCTGTGg/g																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48953741	48953742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001121-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	205	342	0	ENST00000267163.4:c.1346dupG	p.Val450SerfsTer13	p.V450Sfs*13	ENST00000267163	NM_000321.2	448	-/G																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	277	458	1	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61712943	61712943	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	569	565	0	ENST00000401558.2:c.2468T>G	p.Phe823Cys	p.F823C	ENST00000401558	NM_003400.3	823	tTt/tGt																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198267340	198267340	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	136	505	0	ENST00000335508.6:c.2017A>T	p.Ile673Phe	p.I673F	ENST00000335508	NM_012433.2	673	Att/Ttt																																												NEWRECORD																																		
SOCS1	0	MSKCC	GRCh37	16	11348741	11348741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	231	515	1	ENST00000332029.2:c.595G>A	p.Val199Ile	p.V199I	ENST00000332029	NM_003745.1	199	Gtc/Atc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48954342	48954343	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0012368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	22	259	0	ENST00000267163.4:c.1465_1466dup	p.Glu492LeufsTer4	p.E492Lfs*4	ENST00000267163	NM_000321.2	488	gcg/gcGTg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	169	314	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	119	340	0	ENST00000361445.4:c.5930C>T	p.Thr1977Ile	p.T1977I	ENST00000361445	NM_004958.3	1977	aCa/aTa																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	170	291	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630542	187630542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	168	611	1	ENST00000441802.2:c.440C>T	p.Pro147Leu	p.P147L	ENST00000441802	NM_005245.3	147	cCg/cTg																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57859436	57859436	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	1735	805	0	ENST00000228682.2:c.581C>G	p.Pro194Arg	p.P194R	ENST00000228682	NM_005269.2	194	cCc/cGc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42041074	42041074	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	106	850	1	ENST00000219905.7:c.5452C>T	p.Arg1818Ter	p.R1818*	ENST00000219905	NM_001164273.1	1818	Cga/Tga																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67482874	67482874	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0005225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	95	329	0	ENST00000327367.4:c.1278G>C	p.Ter426TyrextTer6	p.*426Yext*6	ENST00000327367	NM_005902.3	426	taG/taC																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30134461	30134461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	48	428	0	ENST00000263025.4:c.70G>T	p.Val24Phe	p.V24F	ENST00000263025	NM_002746.2	24	Gtc/Ttc																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45867695	45867695	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	143	432	0	ENST00000391945.4:c.705G>T	p.Glu235Asp	p.E235D	ENST00000391945	NM_000400.3	235	gaG/gaT																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045024	47045024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	202	285	0	ENST00000329236.7:c.2116C>T	p.His706Tyr	p.H706Y	ENST00000329236	NM_001204466.1	706	Cac/Tac																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44870255	44870256	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	164	391	0	ENST00000377967.4:c.435dup	p.Phe146IlefsTer6	p.F146Ifs*6	ENST00000377967	NM_021140.2	145	gca/gcAa																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36939183	36939183	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	250	784	0	ENST00000361632.4:c.526G>C	p.Asp176His	p.D176H	ENST00000361632		176	Gac/Cac																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29519891	29519891	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	182	545	0	ENST00000389048.3:c.1680G>C	p.Leu560Phe	p.L560F	ENST00000389048	NM_004304.4	560	ttG/ttC																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149799	202149799	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	112	467	0	ENST00000358485.4:c.1240T>C	p.Phe414Leu	p.F414L	ENST00000358485	NM_001080125.1	414	Ttt/Ctt																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643533	52643533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	166	552	0	ENST00000394830.3:c.2363C>T	p.Ser788Leu	p.S788L	ENST00000394830	NM_018313.4	788	tCa/tTa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	12	240	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189585728	189585728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	245	301	0	ENST00000264731.3:c.989G>C	p.Arg330Thr	p.R330T	ENST00000264731	NM_003722.4	330	aGa/aCa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	101	256	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149500492	149500492	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	242	525	1	ENST00000261799.4:c.2545C>T	p.Arg849Ter	p.R849*	ENST00000261799	NM_002609.3	849	Cga/Tga																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056201	26056201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	134	439	0	ENST00000343677.2:c.456G>C	p.Lys152Asn	p.K152N	ENST00000343677	NM_005319.3	152	aaG/aaC																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652017	36652017	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	177	528	1	ENST00000244741.5:c.139G>T	p.Glu47Ter	p.E47*	ENST00000244741	NM_000389.4	47	Gag/Tag																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	112	410	0	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157150475	157150475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	169	519	0	ENST00000346085.5:c.1657C>G	p.Pro553Ala	p.P553A	ENST00000346085	NM_020732.3	553	Cca/Gca																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145738304	145738304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	271	379	0	ENST00000428558.2:c.2681G>A	p.Arg894Lys	p.R894K	ENST00000428558	NM_004260.3	894	aGa/aAa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8507393	8507393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	28	517	0	ENST00000356435.5:c.1585G>A	p.Glu529Lys	p.E529K	ENST00000356435		529	Gaa/Aaa																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43615040	43615040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	151	537	0	ENST00000355710.3:c.2454G>C	p.Glu818Asp	p.E818D	ENST00000355710	NM_020975.4	818	gaG/gaC																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	438087	438087	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	176	516	0	ENST00000399788.2:c.1882G>C	p.Asp628His	p.D628H	ENST00000399788	NM_001042603.1	628	Gat/Cat																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49442507	49442507	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	159	590	0	ENST00000301067.7:c.4066G>C	p.Asp1356His	p.D1356H	ENST00000301067	NM_003482.3	1356	Gat/Cat																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49442519	49442519	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	149	535	0	ENST00000301067.7:c.4054G>T	p.Glu1352Ter	p.E1352*	ENST00000301067	NM_003482.3	1352	Gag/Tag																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29004241	29004241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	162	551	1	ENST00000282397.4:c.1052G>A	p.Arg351Gln	p.R351Q	ENST00000282397	NM_002019.4	351	cGg/cAg																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060934	38060934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	85	337	0	ENST00000250448.2:c.1055C>A	p.Pro352Gln	p.P352Q	ENST00000250448	NM_004496.3	352	cCa/cAa																																												NEWRECORD																																		
RAD51	0	MSKCC	GRCh37	15	41023306	41023306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	237	660	1	ENST00000267868.3:c.950C>T	p.Ser317Phe	p.S317F	ENST00000267868	NM_002875.4	317	tCt/tTt																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3789661	3789661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	210	579	0	ENST00000262367.5:c.4198G>C	p.Glu1400Gln	p.E1400Q	ENST00000262367	NM_004380.2	1400	Gag/Cag																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23640569	23640569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	178	563	0	ENST00000261584.4:c.2542G>C	p.Asp848His	p.D848H	ENST00000261584	NM_024675.3	848	Gat/Cat																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	235	723	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag																																												NEWRECORD																																		
GPS2	0	MSKCC	GRCh37	17	7218277	7218277	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	170	495	0	ENST00000380728.2:c.94+1G>A		p.X32_splice	ENST00000380728		32																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	459	604	1	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	33	622	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	29	493	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41228557	41228557	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	200	564	0	ENST00000357654.3:c.4432G>C	p.Glu1478Gln	p.E1478Q	ENST00000357654	NM_007294.3	1478	Gag/Cag																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41243604	41243604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	167	562	0	ENST00000357654.3:c.3944C>T	p.Pro1315Leu	p.P1315L	ENST00000357654	NM_007294.3	1315	cCt/cTt																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15299893	15299893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	199	598	0	ENST00000263388.2:c.1285G>A	p.Glu429Lys	p.E429K	ENST00000263388	NM_000435.2	429	Gag/Aag																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45871995	45871995	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	105	346	0	ENST00000391945.4:c.253G>C	p.Glu85Gln	p.E85Q	ENST00000391945	NM_000400.3	85	Gaa/Caa																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252953	36252953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	151	421	0	ENST00000300305.3:c.409G>A	p.Asp137Asn	p.D137N	ENST00000300305		137	Gat/Aat																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36265261	36265261	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	101	357	0	ENST00000300305.3:c.59-1G>C		p.X20_splice	ENST00000300305		20																																													NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123176451	123176451	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	192	368	0	ENST00000218089.9:c.418C>T	p.Gln140Ter	p.Q140*	ENST00000218089	NM_001042749.1	140	Cag/Tag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426549	49426550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	326	782	0	ENST00000301067.7:c.11938dup	p.Gln3980ProfsTer32	p.Q3980Pfs*32	ENST00000301067	NM_003482.3	3980	cag/cCag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44922786	44922805	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGCCTAGCGTCTCTCAGC	AGTGCCTAGCGTCTCTCAGC	-			P-0005449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	33	313	0	ENST00000377967.4:c.1647_1666del	p.Arg549SerfsTer25	p.R549Sfs*25	ENST00000377967	NM_021140.2	549	agAGTGCCTAGCGTCTCTCAGCct/agct																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	134	375	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0012751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	158	530	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0012751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	158	530	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225376187	225376187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1172	229	645	1	ENST00000264414.4:c.767C>T	p.Thr256Met	p.T256M	ENST00000264414	NM_003590.4	256	aCg/aTg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44929395	44929395	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	262	403	0	ENST00000377967.4:c.2496del	p.Thr833LeufsTer34	p.T833Lfs*34	ENST00000377967	NM_021140.2	832	tCc/tc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	139	189	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0006676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	501	456	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	161	276	1	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162722960	162722960	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	486	543	0	ENST00000367921.3:c.158C>G	p.Ser53Ter	p.S53*	ENST00000367921	NM_006182.2	53	tCa/tGa																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713316	30713316	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	652	337	0	ENST00000359013.4:c.716A>G	p.Glu239Gly	p.E239G	ENST00000359013	NM_001024847.2	239	gAg/gGg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46230405	46230405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	265	320	0	ENST00000334344.6:c.739C>T	p.Arg247Cys	p.R247C	ENST00000334344	NM_152641.2	247	Cgt/Tgt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	34	414	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259263	89259263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	31	436	0	ENST00000336596.2:c.407G>A	p.Arg136Gln	p.R136Q	ENST00000336596	NM_005233.5	136	cGa/cAa																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112041025	112041025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	81	591	0	ENST00000368678.4:c.230G>A	p.Arg77His	p.R77H	ENST00000368678		77	cGt/cAt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152163912	152163912	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	47	469	0	ENST00000206249.3:c.633A>T	p.Arg211Ser	p.R211S	ENST00000206249	NM_000125.3	211	agA/agT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	71	599	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat																																												NEWRECORD																																		
DNAJB1	0	MSKCC	GRCh37	19	14627666	14627666	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1210	70	660	0	ENST00000254322.2:c.404C>G	p.Pro135Arg	p.P135R	ENST00000254322	NM_006145.1	135	cCt/cGt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48573523	48573524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	46	592	0	ENST00000342988.3:c.112dup	p.Arg38LysfsTer4	p.R38Kfs*4	ENST00000342988	NM_005359.5	36	gca/gcAa																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971207	21971216	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGCCAGAG	CCTGCCAGAG	-			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	32	169	0	ENST00000304494.5:c.151-9_151del		p.X51_splice	ENST00000304494	NM_000077.4	51																																													NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971207	21971216	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGCCAGAG	CCTGCCAGAG	-			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	32	169	0	ENST00000304494.5:c.151-9_151del		p.X51_splice	ENST00000304494	NM_000077.4	51																																													NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971205	21971216	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCTGCCAGAG	GACCTGCCAGAG	CA			P-0005558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	32	170	0	ENST00000304494.5:c.151-9_153delinsTG		p.X51_splice	ENST00000304494	NM_000077.4	51																																													NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117609813	117609813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	85	833	1	ENST00000368508.3:c.6886G>A	p.Glu2296Lys	p.E2296K	ENST00000368508	NM_002944.2	2296	Gaa/Aaa																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	160	578	1	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	137	593	1	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158622630	158622630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	216	972	1	ENST00000263640.3:c.869C>T	p.Ser290Leu	p.S290L	ENST00000263640	NM_001105.4	290	tCg/tTg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16199342	16199342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	257	775	0	ENST00000375759.3:c.115C>T	p.Pro39Ser	p.P39S	ENST00000375759	NM_015001.2	39	Ccc/Tcc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139401389	139401389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	91	440	1	ENST00000277541.6:c.3680C>T	p.Pro1227Leu	p.P1227L	ENST00000277541	NM_017617.3	1227	cCc/cTc																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94120377	94120377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	86	918	0	ENST00000369303.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000369303	NM_004440.3	225	tCc/tTc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508905	106508905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	108	347	0	ENST00000359195.3:c.899G>A	p.Gly300Glu	p.G300E	ENST00000359195	NM_002649.2	300	gGa/gAa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8492945	8492945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	228	587	1	ENST00000356435.5:c.2384C>T	p.Ser795Phe	p.S795F	ENST00000356435		795	tCc/tTc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55961109	55961109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1509	172	622	0	ENST00000263923.4:c.2831G>A	p.Arg944Gln	p.R944Q	ENST00000263923	NM_002253.2	944	cGa/cAa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29005419	29005419	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55687105		P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	59	501	0	ENST00000282397.4:c.842G>A	p.Arg281Gln	p.R281Q	ENST00000282397	NM_002019.4	281	cGa/cAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577531	7577532	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	67	626	0	ENST00000269305.4:c.749_750delinsTT	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCC/cTT																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41385271	41385271	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	74	561	0	ENST00000373198.4:c.690G>A	p.Trp230Ter	p.W230*	ENST00000373198	NM_133170.3	230	tgG/tgA																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81953195	81953195	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187454354		P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	113	907	1	ENST00000359376.3:c.2161G>A	p.Glu721Lys	p.E721K	ENST00000359376	NM_002661.3	721	Gag/Aag																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117630069	117630069	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	98	674	1	ENST00000368508.3:c.6457G>A	p.Glu2153Lys	p.E2153K	ENST00000368508	NM_002944.2	2153	Gag/Aag																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212286760	212286760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	108	607	1	ENST00000342788.4:c.2936G>A	p.Arg979Gln	p.R979Q	ENST00000342788	NM_005235.2	979	cGa/cAa																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11204752	11204752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	240	855	1	ENST00000361445.4:c.4825C>T	p.Pro1609Ser	p.P1609S	ENST00000361445	NM_004958.3	1609	Ccc/Tcc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258107	16258107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	155	460	0	ENST00000375759.3:c.5372C>T	p.Ala1791Val	p.A1791V	ENST00000375759	NM_015001.2	1791	gCc/gTc																																												NEWRECORD																																		
MYCL1	0	MSKCC	GRCh37	1	40363547	40363547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	88	606	0	ENST00000397332.2:c.682C>T	p.Pro228Ser	p.P228S	ENST00000397332	NM_001033082.2	228	Ccc/Tcc																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46725708	46725708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	186	702	0	ENST00000371975.4:c.344A>C	p.Lys115Thr	p.K115T	ENST00000371975	NM_003579.3	115	aAa/aCa																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156838323	156838323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	106	663	2	ENST00000524377.1:c.601C>T	p.Pro201Ser	p.P201S	ENST00000524377	NM_002529.3	201	Ccc/Tcc																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25966556	25966556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	177	648	0	ENST00000435504.4:c.2650C>T	p.Pro884Ser	p.P884S	ENST00000435504		884	Ccc/Tcc																																												NEWRECORD																																		
EPCAM	0	MSKCC	GRCh37	2	47612324	47612324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	248	847	1	ENST00000263735.4:c.878G>A	p.Arg293Lys	p.R293K	ENST00000263735	NM_002354.2	293	aGa/aAa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164786	47164786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	127	429	0	ENST00000409792.3:c.1340C>T	p.Ser447Phe	p.S447F	ENST00000409792	NM_014159.6	447	tCt/tTt																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89391088	89391088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	73	595	1	ENST00000336596.2:c.1154G>A	p.Arg385Gln	p.R385Q	ENST00000336596	NM_005233.5	385	cGa/cAa																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134968305	134968305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	161	657	0	ENST00000398015.3:c.2818C>T	p.Leu940Phe	p.L940F	ENST00000398015	NM_004441.4	940	Ctc/Ttc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142253975	142253975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	95	586	0	ENST00000350721.4:c.3892G>A	p.Asp1298Asn	p.D1298N	ENST00000350721	NM_001184.3	1298	Gat/Aat																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185146647	185146647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	70	463	0	ENST00000265026.3:c.278C>T	p.Ser93Leu	p.S93L	ENST00000265026	NM_004721.4	93	tCa/tTa																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55133459	55133459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	998	634	0	ENST00000257290.5:c.763G>A	p.Gly255Ser	p.G255S	ENST00000257290	NM_006206.4	255	Ggc/Agc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55156621	55156621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	934	577	3	ENST00000257290.5:c.3022G>A	p.Asp1008Asn	p.D1008N	ENST00000257290	NM_006206.4	1008	Gat/Aat																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55976920	55976920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	137	451	2	ENST00000263923.4:c.992C>T	p.Ala331Val	p.A331V	ENST00000263923	NM_002253.2	331	gCt/gTt																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66242752	66242752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	136	575	0	ENST00000273854.3:c.1820C>T	p.Ser607Phe	p.S607F	ENST00000273854	NM_004439.5	607	tCt/tTt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156354	106156354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	132	505	2	ENST00000380013.4:c.1255C>T	p.Pro419Ser	p.P419S	ENST00000380013	NM_001127208.2	419	Cct/Tct																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1279483	1279483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	86	621	0	ENST00000310581.5:c.2053G>A	p.Asp685Asn	p.D685N	ENST00000310581	NM_198253.2	685	Gat/Aat																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180046037	180046037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	101	236	0	ENST00000261937.6:c.2834C>T	p.Ala945Val	p.A945V	ENST00000261937	NM_182925.4	945	gCc/gTc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30672734	30672734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	138	966	0	ENST00000376406.3:c.4226C>T	p.Pro1409Leu	p.P1409L	ENST00000376406	NM_014641.2	1409	cCc/cTc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30673634	30673634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	140	883	1	ENST00000376406.3:c.3326C>T	p.Thr1109Ile	p.T1109I	ENST00000376406	NM_014641.2	1109	aCt/aTt																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32170216	32170216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	80	539	0	ENST00000375023.3:c.3392C>T	p.Pro1131Leu	p.P1131L	ENST00000375023	NM_004557.3	1131	cCt/cTt																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94120534	94120534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	220	1054	1	ENST00000369303.4:c.517G>A	p.Glu173Lys	p.E173K	ENST00000369303	NM_004440.3	173	Gag/Aag																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106536242	106536242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	176	586	0	ENST00000369096.4:c.209G>A	p.Gly70Asp	p.G70D	ENST00000369096	NM_001198.3	70	gGt/gAt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117710984	117710984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	59	264	1	ENST00000368508.3:c.1288G>A	p.Gly430Ser	p.G430S	ENST00000368508	NM_002944.2	430	Ggc/Agc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509857	106509857	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	201	868	0	ENST00000359195.3:c.1851G>A	p.Trp617Ter	p.W617*	ENST00000359195	NM_002649.2	617	tgG/tgA																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151878070	151878070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	29	497	0	ENST00000262189.6:c.6875C>T	p.Pro2292Leu	p.P2292L	ENST00000262189	NM_170606.2	2292	cCa/cTa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8319902	8319902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	276	704	2	ENST00000356435.5:c.5599G>A	p.Glu1867Lys	p.E1867K	ENST00000356435		1867	Gaa/Aaa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8331723	8331723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	218	532	0	ENST00000356435.5:c.5393G>A	p.Arg1798Gln	p.R1798Q	ENST00000356435		1798	cGa/cAa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70406301	70406301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	210	676	1	ENST00000373644.4:c.3815C>T	p.Ser1272Phe	p.S1272F	ENST00000373644	NM_030625.2	1272	tCc/tTc																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94197310	94197310	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	72	526	0	ENST00000323929.3:c.1194T>A	p.Phe398Leu	p.F398L	ENST00000323929	NM_005591.3	398	ttT/ttA																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100933307	100933307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	112	1020	1	ENST00000325455.5:c.2083G>A	p.Glu695Lys	p.E695K	ENST00000325455	NM_001202474.3	695	Gaa/Aaa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118359384	118359384	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	79	655	0	ENST00000534358.1:c.4388A>T	p.Asn1463Ile	p.N1463I	ENST00000534358	NM_005933.3	1463	aAc/aTc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118373893	118373893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	173	626	0	ENST00000534358.1:c.7286G>A	p.Arg2429Lys	p.R2429K	ENST00000534358	NM_005933.3	2429	aGa/aAa																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119103179	119103179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	205	556	1	ENST00000264033.4:c.217C>T	p.Pro73Ser	p.P73S	ENST00000264033	NM_005188.3	73	Cca/Tca																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119149242	119149242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	200	746	0	ENST00000264033.4:c.1250C>T	p.Pro417Leu	p.P417L	ENST00000264033	NM_005188.3	417	cCt/cTt																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	427339	427339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	75	607	1	ENST00000399788.2:c.2830G>A	p.Glu944Lys	p.E944K	ENST00000399788	NM_001042603.1	944	Gaa/Aaa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435401	18435401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	79	552	0	ENST00000266497.5:c.386C>T	p.Pro129Leu	p.P129L	ENST00000266497		129	cCc/cTc																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50492521	50492521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	81	592	1	ENST00000394963.4:c.1417C>T	p.Pro473Ser	p.P473S	ENST00000394963	NM_003076.4	473	Cca/Tca																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57859610	57859610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	119	942	1	ENST00000228682.2:c.664G>A	p.Glu222Lys	p.E222K	ENST00000228682	NM_005269.2	222	Gag/Aag																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57865548	57865548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	305	940	0	ENST00000228682.2:c.3025C>T	p.Pro1009Ser	p.P1009S	ENST00000228682	NM_005269.2	1009	Ccc/Tcc																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111885850	111885850	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	117	1079	0	ENST00000341259.2:c.1472A>G	p.His491Arg	p.H491R	ENST00000341259	NM_005475.2	491	cAc/cGc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112311	115112311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	24	111	0	ENST00000257566.3:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000257566	NM_016569.3	477	Gag/Aag																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115118836	115118836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	89	587	2	ENST00000257566.3:c.505C>T	p.Arg169Trp	p.R169W	ENST00000257566	NM_016569.3	169	Cgg/Tgg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133249767	133249767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	89	600	0	ENST00000320574.5:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000320574	NM_006231.2	486	Ccc/Tcc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32911782	32911782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	99	1055	0	ENST00000380152.3:c.3290T>C	p.Phe1097Ser	p.F1097S	ENST00000380152		1097	tTt/tCt																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88679835	88679835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	75	441	0	ENST00000360948.2:c.628C>T	p.Pro210Ser	p.P210S	ENST00000360948	NM_001012338.2	210	Cct/Tct																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90631950	90631950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	97	637	0	ENST00000330062.3:c.403C>T	p.Pro135Ser	p.P135S	ENST00000330062	NM_002168.2	135	Ccc/Tcc																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91352379	91352379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	80	531	1	ENST00000355112.3:c.3764C>T	p.Ser1255Phe	p.S1255F	ENST00000355112	NM_000057.2	1255	tCt/tTt																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99478567	99478567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	82	595	0	ENST00000268035.6:c.3209C>T	p.Ser1070Phe	p.S1070F	ENST00000268035	NM_000875.3	1070	tCc/tTc																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	347206	347206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	185	619	0	ENST00000262320.3:c.1805G>A	p.Cys602Tyr	p.C602Y	ENST00000262320	NM_003502.3	602	tGc/tAc																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56863005	56863005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	82	854	0	ENST00000308159.5:c.911C>T	p.Pro304Leu	p.P304L	ENST00000308159	NM_014669.4	304	cCc/cTc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72984778	72984778	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	130	848	1	ENST00000268489.5:c.2806C>T	p.Gln936Ter	p.Q936*	ENST00000268489	NM_006885.3	936	Cag/Tag																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89347249	89347249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	120	994	0	ENST00000301030.4:c.5701C>T	p.Pro1901Ser	p.P1901S	ENST00000301030	NM_001256183.1	1901	Cct/Tct																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89348011	89348011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	150	1198	2	ENST00000301030.4:c.4939C>T	p.Pro1647Ser	p.P1647S	ENST00000301030	NM_001256183.1	1647	Cct/Tct																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89383402	89383402	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	111	932	0	ENST00000301030.4:c.26C>A	p.Ala9Glu	p.A9E	ENST00000301030	NM_001256183.1	9	gCa/gAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577527	7577527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	71	626	0	ENST00000269305.4:c.754C>T	p.Leu252Phe	p.L252F	ENST00000269305	NM_001126112.2	252	Ctc/Ttc																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7990645	7990645	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	135	623	0	ENST00000319144.4:c.116A>G	p.Asn39Ser	p.N39S	ENST00000319144	NM_001139.2	39	aAc/aGc																																												NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8109815	8109815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	68	504	0	ENST00000585124.1:c.680C>T	p.Ser227Phe	p.S227F	ENST00000585124	NM_004217.3	227	tCc/tTc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2226581	2226581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	129	572	0	ENST00000398665.3:c.4061C>T	p.Pro1354Leu	p.P1354L	ENST00000398665	NM_032482.2	1354	cCc/cTc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11138474	11138474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	153	549	1	ENST00000344626.4:c.3230G>A	p.Arg1077Gln	p.R1077Q	ENST00000344626	NM_003072.3	1077	cGa/cAa																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41727938	41727938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	127	599	0	ENST00000301178.4:c.563C>T	p.Pro188Leu	p.P188L	ENST00000301178	NM_021913.4	188	cCc/cTc																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48650526	48650526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	237	497	0	ENST00000376670.3:c.496C>T	p.Pro166Ser	p.P166S	ENST00000376670	NM_002049.3	166	Cct/Tct																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411447	63411447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	227	462	0	ENST00000330258.3:c.1720C>T	p.Arg574Trp	p.R574W	ENST00000330258	NM_152424.3	574	Cgg/Tgg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70344165	70344165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	203	375	0	ENST00000374080.3:c.1901C>T	p.Pro634Leu	p.P634L	ENST00000374080		634	cCc/cTc																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100625027	100625027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	100	434	0	ENST00000308731.7:c.350C>T	p.Thr117Ile	p.T117I	ENST00000308731	NM_000061.2	117	aCt/aTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578139	7578177	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACC	TAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACC	-			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	176	577	1	ENST00000269305.4:c.672_672+38del		p.X224_splice	ENST00000269305	NM_001126112.2	224																																													NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45395756	45395758	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	139	507	0	ENST00000262160.6:c.376_378del	p.Val126del	p.V126del	ENST00000262160	NM_005901.5	126	GTT/-																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29677327	29677328	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	139	514	0	ENST00000358273.4:c.7450dup	p.Ser2484PhefsTer3	p.S2484Ffs*3	ENST00000358273	NM_001042492.2	2483	cct/ccTt																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47158215	47158215	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	77	448	0	ENST00000409792.3:c.4484del	p.Lys1495SerfsTer20	p.K1495Sfs*20	ENST00000409792	NM_014159.6	1495	aAg/ag																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16257059	16257060	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	131	461	0	ENST00000375759.3:c.4324_4325delinsTT	p.Pro1442Leu	p.P1442L	ENST00000375759	NM_015001.2	1442	CCa/TTa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16257858	16257859	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	94	331	0	ENST00000375759.3:c.5123_5124delinsTT	p.Pro1708Leu	p.P1708L	ENST00000375759	NM_015001.2	1708	cCC/cTT																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31015958	31015959	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	78	430	0	ENST00000375687.4:c.280_281delinsTT	p.Pro94Leu	p.P94L	ENST00000375687	NM_015338.5	94	CCa/TTa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151879141	151879142	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	34	727	1	ENST00000262189.6:c.5803_5804delinsTT	p.Pro1935Phe	p.P1935F	ENST00000262189	NM_170606.2	1935	CCc/TTc																																												NEWRECORD																																		
CDK6	0	MSKCC	GRCh37	7	92354981	92354982	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	127	531	0	ENST00000265734.4:c.495_496delinsTT	p.Leu166Phe	p.L166F	ENST00000265734	NM_001259.6	165	ggCCtt/ggTTtt																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66535338	66535339	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	158	722	0	ENST00000273854.3:c.122_123delinsAA	p.Trp41Ter	p.W41*	ENST00000273854	NM_004439.5	41	tGG/tAA																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99193529	99193530	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	89	570	1	ENST00000074304.5:c.2724_2725delinsAA	p.Glu909Lys	p.E909K	ENST00000074304	NM_001134224.1	908	ctGGag/ctAAag																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151917671	151917672	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	71	267	0	ENST00000262189.6:c.3648_3649delinsTT	p.Leu1217Phe	p.L1217F	ENST00000262189	NM_170606.2	1216	gtCCtt/gtTTtt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8633405	8633406	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	230	729	0	ENST00000356435.5:c.263_264delinsAA	p.Arg88Gln	p.R88Q	ENST00000356435		88	cGG/cAA																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045516	47045517	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	192	311	0	ENST00000329236.7:c.2249_2250delinsTT	p.Pro750Leu	p.P750L	ENST00000329236	NM_001204466.1	750	cCC/cTT																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1295250	1295253	+	upstream_gene_variant	5'Flank	ONP	GAGG	GAGG	TTCT			P-0012860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	491	259	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	121	203	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58677925	58677948	+	inframe_deletion	In_Frame_Del	DEL	TCCGCGGCCGTCGCCGGCCGCCCT	TCCGCGGCCGTCGCCGGCCGCCCT	-			P-0003581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	124	228	0	ENST00000305921.3:c.153_176delGCGGCCGTCGCCGGCCGCCCTTCC	p.Arg52_Pro59del	p.R52_P59del	ENST00000305921	NM_003620.3	50	ccTCCGCGGCCGTCGCCGGCCGCCCTt/cct																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111471	8111472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	150	289	0	ENST00000346208.3:c.958dupT	p.Cys320LeufsTer32	p.C320Lfs*32	ENST00000346208		319	-/T																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115922	8115923	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCG			P-0003581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	74	185	0	ENST00000346208.3:c.1271_1274dup	p.Ser426AlafsTer82	p.S426Afs*82	ENST00000346208		423	cac/caCCCGc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	142	145	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	34	68	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0003279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	242	218	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70338683	70338683	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	282	190	0	ENST00000374080.3:c.79C>G	p.Gln27Glu	p.Q27E	ENST00000374080		27	Cag/Gag																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36938203	36938203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	286	334	1	ENST00000361632.4:c.758G>A	p.Trp253Ter	p.W253*	ENST00000361632		253	tGg/tAg																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149808	202149808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	87	277	0	ENST00000358485.4:c.1249C>G	p.Gln417Glu	p.Q417E	ENST00000358485	NM_001080125.1	417	Cag/Gag																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662805	227662805	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	219	282	0	ENST00000305123.5:c.650C>A	p.Ser217Ter	p.S217*	ENST00000305123	NM_005544.2	217	tCg/tAg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294370	1294370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	63	127	0	ENST00000310581.5:c.631G>A	p.Gly211Arg	p.G211R	ENST00000310581	NM_198253.2	211	Ggg/Agg																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145742824	145742824	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	69	54	0	ENST00000428558.2:c.187G>T	p.Glu63Ter	p.E63*	ENST00000428558	NM_004260.3	63	Gag/Tag																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68853288	68853288	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	114	224	0	ENST00000261769.5:c.1671G>C	p.Lys557Asn	p.K557N	ENST00000261769	NM_004360.3	557	aaG/aaC																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15272338	15272338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	159	143	0	ENST00000263388.2:c.6101C>T	p.Pro2034Leu	p.P2034L	ENST00000263388	NM_000435.2	2034	cCc/cTc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164851	36164852	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	136	163	0	ENST00000300305.3:c.1023dupC	p.Ile342HisfsTer258	p.I342Hfs*258	ENST00000300305		341	-/C																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52440302	52440310	+	inframe_deletion	In_Frame_Del	DEL	CACCTTCAG	CACCTTCAG	-			P-0003279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	209	242	0	ENST00000460680.1:c.742_750del	p.Leu248_Val250del	p.L248_V250del	ENST00000460680	NM_004656.3	248	CTGAAGGTG/-																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	176015368	176015368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	169	427	0	ENST00000367669.3:c.1370C>T	p.Ala457Val	p.A457V	ENST00000367669	NM_022457.5	457	gCa/gTa																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16082449	16082449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	100	329	0	ENST00000281043.3:c.263G>T	p.Trp88Leu	p.W88L	ENST00000281043	NM_005378.4	88	tGg/tTg																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25966882	25966882	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	166	451	0	ENST00000435504.4:c.2324A>G	p.Gln775Arg	p.Q775R	ENST00000435504		775	cAa/cGa																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30730005	30730005	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	94	236	0	ENST00000359013.4:c.1599+2T>C		p.X533_splice	ENST00000359013	NM_001024847.2	533																																													NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128205667	128205667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	124	433	0	ENST00000341105.2:c.208G>A	p.Val70Ile	p.V70I	ENST00000341105	NM_032638.4	70	Gtc/Atc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	136	391	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187518263	187518263	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	33	156	0	ENST00000441802.2:c.12431A>G	p.Asn4144Ser	p.N4144S	ENST00000441802	NM_005245.3	4144	aAc/aGc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30670355	30670355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	255	566	0	ENST00000376406.3:c.6077T>C	p.Leu2026Pro	p.L2026P	ENST00000376406	NM_014641.2	2026	cTa/cCa																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137519568	137519568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	203	497	0	ENST00000367739.4:c.1070C>T	p.Thr357Ile	p.T357I	ENST00000367739	NM_000416.2	357	aCt/aTt																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729888	41729888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	161	735	1	ENST00000242208.4:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000242208	NM_002192.2	214	cGg/cAg																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	174	417	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32456636	32456636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	32	69	0	ENST00000332351.3:c.256C>A	p.Leu86Met	p.L86M	ENST00000332351	NM_024426.4	86	Ctg/Atg																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32456737	32456737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	63	239	0	ENST00000332351.3:c.155G>A	p.Arg52His	p.R52H	ENST00000332351	NM_024426.4	52	cGt/cAt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118343913	118343913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	171	360	1	ENST00000534358.1:c.2039C>T	p.Ser680Leu	p.S680L	ENST00000534358	NM_005933.3	680	tCg/tTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49438528	49438528	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	131	389	0	ENST00000301067.7:c.4962A>C	p.Glu1654Asp	p.E1654D	ENST00000301067	NM_003482.3	1654	gaA/gaC																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121437073	121437073	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	71	390	0	ENST00000257555.6:c.1504C>A	p.Leu502Ile	p.L502I	ENST00000257555		502	Ctc/Atc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29041174	29041174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	199	509	0	ENST00000282397.4:c.254G>A	p.Gly85Asp	p.G85D	ENST00000282397	NM_002019.4	85	gGc/gAc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1312	335	717	2	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81953118	81953118	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	185	675	1	ENST00000359376.3:c.2084T>C	p.Ile695Thr	p.I695T	ENST00000359376	NM_002661.3	695	aTc/aCc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56434959	56434959	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	205	541	0	ENST00000407977.2:c.2178G>A	p.Trp726Ter	p.W726*	ENST00000407977		726	tgG/tgA																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	218	564	0	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga																																												NEWRECORD																																		
PRKAR1A	0	MSKCC	GRCh37	17	66519896	66519896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	179	433	1	ENST00000358598.2:c.379G>A	p.Ala127Thr	p.A127T	ENST00000358598	NM_212471.2	127	Gct/Act																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42796615	42796615	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	73	252	0	ENST00000575354.2:c.3172T>C	p.Ser1058Pro	p.S1058P	ENST00000575354	NM_015125.3	1058	Tca/Cca																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40730876	40730876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	96	345	1	ENST00000373198.4:c.3659G>A	p.Arg1220Gln	p.R1220Q	ENST00000373198	NM_133170.3	1220	cGg/cAg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874013	151874013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	232	573	0	ENST00000262189.6:c.8525delA	p.Asn2842MetfsTer21	p.N2842Mfs*21	ENST00000262189	NM_170606.2	2842	aAt/at																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412308	139412308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	176	421	0	ENST00000277541.6:c.1337del	p.Gly446AlafsTer185	p.G446Afs*185	ENST00000277541	NM_017617.3	446	gGc/gc																																												NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66286237	66286238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	169	537	0	ENST00000273854.3:c.1448dup	p.Asn483LysfsTer21	p.N483Kfs*21	ENST00000273854	NM_004439.5	483	aac/aaAc																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99439989	99439989	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	126	325	0	ENST00000268035.6:c.957del	p.Met319IlefsTer66	p.M319Ifs*66	ENST00000268035	NM_000875.3	319	atG/at																																												NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	56	296	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152345769	152345769	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	205	474	0	ENST00000359321.1:c.801del	p.Lys267AsnfsTer30	p.K267Nfs*30	ENST00000359321	NM_005431.1	267	aaA/aa																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29910372	29910372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	62	429	0	ENST00000376809.5:c.46delG	p.Ala16ProfsTer4	p.A16Pfs*4	ENST00000376809	NM_002116.7	14	tcG/tc																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	62	314	0	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																												NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	43	240	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108151825	108151825	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	160	331	0	ENST00000278616.4:c.3510del	p.Lys1170AsnfsTer11	p.K1170Nfs*11	ENST00000278616	NM_000051.3	1169	gAa/ga																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177558	56177558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	114	277	0	ENST00000399503.3:c.2531C>T	p.Ser844Phe	p.S844F	ENST00000399503	NM_005921.1	844	tCc/tTc																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2220634	2220634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	154	761	0	ENST00000326181.6:c.251G>T	p.Arg84Leu	p.R84L	ENST00000326181	NM_032271.2	84	cGc/cTc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70446398	70446398	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	105	532	2	ENST00000373644.4:c.5338C>T	p.Arg1780Ter	p.R1780*	ENST00000373644	NM_030625.2	1780	Cga/Tga																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46531793	46531793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	81	383	0	ENST00000262741.5:c.554A>G	p.His185Arg	p.H185R	ENST00000262741	NM_003629.3	185	cAc/cGc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108203493	108203493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	74	184	0	ENST00000278616.4:c.7793G>T	p.Arg2598Leu	p.R2598L	ENST00000278616	NM_000051.3	2598	cGa/cTa																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119145620	119145620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	185	411	1	ENST00000264033.4:c.826G>A	p.Glu276Lys	p.E276K	ENST00000264033	NM_005188.3	276	Gaa/Aaa																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12022436	12022436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1479	278	959	3	ENST00000396373.4:c.542G>T	p.Arg181Leu	p.R181L	ENST00000396373	NM_001987.4	181	cGc/cTc																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061174	38061174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	55	248	0	ENST00000250448.2:c.815C>T	p.Pro272Leu	p.P272L	ENST00000250448	NM_004496.3	272	cCg/cTg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831843	72831843	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1205	68	697	0	ENST00000268489.5:c.4738T>C	p.Ser1580Pro	p.S1580P	ENST00000268489	NM_006885.3	1580	Tca/Cca																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89351871	89351871	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1276	192	757	0	ENST00000301030.4:c.1079C>G	p.Pro360Arg	p.P360R	ENST00000301030	NM_001256183.1	360	cCg/cGg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	103	535	2	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578199	7578199	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1313	162	739	0	ENST00000269305.4:c.650T>A	p.Val217Glu	p.V217E	ENST00000269305	NM_001126112.2	217	gTg/gAg																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881623	37881623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1248	150	587	0	ENST00000269571.5:c.2693G>T	p.Arg898Leu	p.R898L	ENST00000269571		898	cGg/cTg																																												NEWRECORD																																		
MALT1	0	MSKCC	GRCh37	18	56409195	56409195	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	85	418	1	ENST00000348428.3:c.1702G>T	p.Glu568Ter	p.E568*	ENST00000348428	NM_006785.3	568	Gaa/Taa																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221238	1221239	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	541	680	0	ENST00000326873.7:c.761_762insT	p.Phe255LeufsTer11	p.F255Lfs*11	ENST00000326873	NM_000455.4	254	ccc/ccTc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30143056	30143056	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	119	814	2	ENST00000389048.3:c.470C>A	p.Pro157His	p.P157H	ENST00000389048	NM_004304.4	157	cCc/cAc																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89448585	89448585	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	95	507	0	ENST00000336596.2:c.1549T>C	p.Tyr517His	p.Y517H	ENST00000336596	NM_005233.5	517	Tat/Cat																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55961815	55961815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	76	329	0	ENST00000263923.4:c.2746G>T	p.Val916Leu	p.V916L	ENST00000263923	NM_002253.2	916	Gtg/Ttg																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876344	35876344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	81	430	0	ENST00000303115.3:c.1136C>A	p.Ala379Asp	p.A379D	ENST00000303115	NM_002185.3	379	gCc/gAc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55227848	55227848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	43	283	0	ENST00000275493.2:c.1315G>C	p.Ala439Pro	p.A439P	ENST00000275493	NM_005228.3	439	Gca/Cca																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371741	55371741	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	75	513	0	ENST00000297316.4:c.431A>T	p.Gln144Leu	p.Q144L	ENST00000297316	NM_022454.3	144	cAg/cTg																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135798881	135798881	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	28	160	0	ENST00000298552.3:c.364-2A>G		p.X122_splice	ENST00000298552	NM_001162426.1	122																																													NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70360540	70360540	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014361-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1202	328	809	0	ENST00000374080.3:c.6100A>T	p.Ser2034Cys	p.S2034C	ENST00000374080		2034	Agt/Tgt																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1295242	1295242	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1361	191	346	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57485115	57485115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1347	204	504	0	ENST00000371085.3:c.949C>T	p.Arg317Cys	p.R317C	ENST00000371085	NM_000516.4	317	Cgc/Tgc																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21562747	21562747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	55	193	0	ENST00000382592.4:c.1172G>A	p.Arg391His	p.R391H	ENST00000382592	NM_014572.2	391	cGc/cAc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108164040	108164040	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	125	242	1	ENST00000278616.4:c.4612G>T	p.Val1538Leu	p.V1538L	ENST00000278616	NM_000051.3	1538	Gta/Tta																																												NEWRECORD																																		
SDHB	0	MSKCC	GRCh37	1	17355225	17355225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	170	400	0	ENST00000375499.3:c.293G>C	p.Cys98Ser	p.C98S	ENST00000375499	NM_003000.2	98	tGt/tCt																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29474059	29474059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	162	641	1	ENST00000389048.3:c.2116C>T	p.Gln706Ter	p.Q706*	ENST00000389048	NM_004304.4	706	Cag/Tag																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248607	212248607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	128	552	0	ENST00000342788.4:c.3660G>T	p.Glu1220Asp	p.E1220D	ENST00000342788	NM_005235.2	1220	gaG/gaT																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225343003	225343003	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1427	152	993	0	ENST00000264414.4:c.2089G>C	p.Asp697His	p.D697H	ENST00000264414	NM_003590.4	697	Gac/Cac																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37067398	37067398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	282	486	0	ENST00000231790.2:c.1309C>T	p.Pro437Ser	p.P437S	ENST00000231790	NM_000249.3	437	Cct/Tct																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467695	66467695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	274	482	1	ENST00000273854.3:c.574G>A	p.Val192Ile	p.V192I	ENST00000273854	NM_004439.5	192	Gtt/Att																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153244158	153244158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	173	689	0	ENST00000281708.4:c.1999G>T	p.Gly667Trp	p.G667W	ENST00000281708	NM_033632.3	667	Ggg/Tgg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1293731	1293731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1359	192	369	0	ENST00000310581.5:c.1270G>T	p.Gly424Cys	p.G424C	ENST00000310581	NM_198253.2	424	Ggt/Tgt																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93964477	93964477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	372	803	0	ENST00000369303.4:c.2420C>T	p.Ala807Val	p.A807V	ENST00000369303	NM_004440.3	807	gCc/gTc																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106554918	106554918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	249	476	1	ENST00000369096.4:c.2035C>T	p.Arg679Cys	p.R679C	ENST00000369096	NM_001198.3	679	Cgt/Tgt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152415582	152415582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	354	662	0	ENST00000206249.3:c.1432G>A	p.Val478Ile	p.V478I	ENST00000206249	NM_000125.3	478	Gtc/Atc																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2968281	2968281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	651	551	1	ENST00000396946.4:c.1705G>T	p.Gly569Ter	p.G569*	ENST00000396946	NM_032415.4	569	Gga/Tga																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2978345	2978345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	562	552	0	ENST00000396946.4:c.985G>C	p.Glu329Gln	p.E329Q	ENST00000396946	NM_032415.4	329	Gag/Cag																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55221846	55221846	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1421	550	765	0	ENST00000275493.2:c.889+1G>T		p.X297_splice	ENST00000275493	NM_005228.3	297																																													NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81372707	81372707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	482	636	2	ENST00000222390.5:c.827C>A	p.Pro276His	p.P276H	ENST00000222390	NM_000601.4	276	cCt/cAt																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508596	106508596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	179	303	0	ENST00000359195.3:c.590C>A	p.Ala197Asp	p.A197D	ENST00000359195	NM_002649.2	197	gCc/gAc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151917629	151917629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	69	333	0	ENST00000262189.6:c.3691G>T	p.Gly1231Cys	p.G1231C	ENST00000262189	NM_170606.2	1231	Ggt/Tgt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21970994	21970994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	123	455	0	ENST00000304494.5:c.364G>T	p.Gly122Cys	p.G122C	ENST00000304494	NM_000077.4	122	Ggc/Tgc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970994	21970994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	123	455	0	ENST00000304494.5:c.364G>T	p.Gly122Cys	p.G122C	ENST00000304494	NM_000077.4	122	Ggc/Tgc																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87339151	87339151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	108	505	0	ENST00000277120.3:c.733C>T	p.His245Tyr	p.H245Y	ENST00000277120		245	Cac/Tac																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8106040	8106040	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	98	393	0	ENST00000346208.3:c.860G>T	p.Cys287Phe	p.C287F	ENST00000346208		287	tGc/tTc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111517	8111517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	550	578	0	ENST00000346208.3:c.1003G>T	p.Asp335Tyr	p.D335Y	ENST00000346208		335	Gac/Tac																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852473	63852473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1359	313	463	0	ENST00000279873.7:c.3251G>T	p.Gly1084Val	p.G1084V	ENST00000279873	NM_032199.2	1084	gGg/gTg																																												NEWRECORD																																		
FGF4	0	MSKCC	GRCh37	11	69589785	69589785	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	47	173	1	ENST00000168712.1:c.68G>A	p.Trp23Ter	p.W23*	ENST00000168712	NM_002007.2	23	tGg/tAg																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94180397	94180397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1862	165	633	0	ENST00000323929.3:c.1771C>G	p.Gln591Glu	p.Q591E	ENST00000323929	NM_005591.3	591	Caa/Gaa																																												NEWRECORD																																		
CDK4	0	MSKCC	GRCh37	12	58145491	58145491	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1197	1308	358	0	ENST00000257904.6:c.10T>C	p.Ser4Pro	p.S4P	ENST00000257904	NM_000075.3	4	Tct/Cct																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73352440	73352440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	158	628	0	ENST00000377767.4:c.465G>T	p.Trp155Cys	p.W155C	ENST00000377767	NM_014953.3	155	tgG/tgT																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91290653	91290653	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	107	596	0	ENST00000355112.3:c.31G>C	p.Glu11Gln	p.E11Q	ENST00000355112	NM_000057.2	11	Gag/Cag																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831747	72831747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1281	221	961	0	ENST00000268489.5:c.4834G>C	p.Glu1612Gln	p.E1612Q	ENST00000268489	NM_006885.3	1612	Gag/Cag																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37682395	37682395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	103	438	0	ENST00000447079.4:c.3586A>G	p.Thr1196Ala	p.T1196A	ENST00000447079	NM_015083.1	1196	Acc/Gcc																																												NEWRECORD																																		
BCL2	0	MSKCC	GRCh37	18	60985608	60985608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	55	183	0	ENST00000333681.4:c.292C>T	p.Arg98Cys	p.R98C	ENST00000333681		98	Cgc/Tgc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5219469	5219469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	380	471	0	ENST00000357368.4:c.3775G>T	p.Ala1259Ser	p.A1259S	ENST00000357368	NM_002850.3	1259	Gcc/Tcc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15376310	15376310	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	319	632	0	ENST00000263377.2:c.704A>T	p.Gln235Leu	p.Q235L	ENST00000263377	NM_058243.2	235	cAg/cTg																																												NEWRECORD																																		
CEBPA	0	MSKCC	GRCh37	19	33793072	33793072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1508	116	453	0	ENST00000498907.2:c.249G>C	p.Gln83His	p.Q83H	ENST00000498907	NM_004364.3	83	caG/caC																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31384656	31384656	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1246	992	649	2	ENST00000328111.2:c.1358G>T	p.Gly453Val	p.G453V	ENST00000328111	NM_006892.3	453	gGg/gTg																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57485103	57485103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1425	251	528	1	ENST00000371085.3:c.937C>T	p.Pro313Ser	p.P313S	ENST00000371085	NM_000516.4	313	Cca/Tca																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42845319	42845319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	143	532	0	ENST00000398585.3:c.943G>C	p.Val315Leu	p.V315L	ENST00000398585	NM_001135099.1	315	Gtc/Ctc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41999995	41999996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	452	879	0	ENST00000219905.7:c.2261dup	p.Leu754PhefsTer6	p.L754Ffs*6	ENST00000219905	NM_001164273.1	753	cct/ccTt																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53224186	53224195	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTTCTCCA	TCCTTCTCCA	-			P-0010904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	138	364	0	ENST00000375401.3:c.3356_3365del	p.Met1119SerfsTer25	p.M1119Sfs*25	ENST00000375401	NM_004187.3	1119	aTGGAGAAGGAg/ag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			957	115	607	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			574	341	525	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258202	16258202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			885	84	332	0	ENST00000375759.3:c.5467C>T	p.Arg1823Cys	p.R1823C	ENST00000375759	NM_015001.2	1823	Cgt/Tgt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55242457	55242457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	139	281	0	ENST00000275493.2:c.2227G>A	p.Ala743Thr	p.A743T	ENST00000275493	NM_005228.3	743	Gct/Act																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	173	246	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	173	246	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98224170	98224170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	40	245	0	ENST00000331920.6:c.2671G>A	p.Gly891Ser	p.G891S	ENST00000331920	NM_000264.3	891	Ggc/Agc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139408978	139408978	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199666126		P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	54	260	0	ENST00000277541.6:c.2191C>T	p.Arg731Trp	p.R731W	ENST00000277541	NM_017617.3	731	Cgg/Tgg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333833	70333833	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			817	155	455	0	ENST00000373644.4:c.1738C>A	p.Leu580Ile	p.L580I	ENST00000373644	NM_030625.2	580	Cta/Ata																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88659550	88659550	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	235	357	0	ENST00000372037.3:c.334-1G>T		p.X112_splice	ENST00000372037	NM_004329.2	112																																													NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32953535	32953535	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	128	254	0	ENST00000380152.3:c.8836T>A	p.Leu2946Met	p.L2946M	ENST00000380152		2946	Ttg/Atg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9943641	9943641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			831	86	380	0	ENST00000330684.3:c.1300G>A	p.Val434Met	p.V434M	ENST00000330684	NM_001134407.1	434	Gtg/Atg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2214487	2214487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	106	233	0	ENST00000398665.3:c.1815G>T	p.Glu605Asp	p.E605D	ENST00000398665	NM_032482.2	605	gaG/gaT																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2216397	2216397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	129	362	0	ENST00000398665.3:c.2041C>T	p.Arg681Cys	p.R681C	ENST00000398665	NM_032482.2	681	Cgc/Tgc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11095989	11095989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	218	462	0	ENST00000344626.4:c.263C>T	p.Pro88Leu	p.P88L	ENST00000344626	NM_003072.3	88	cCg/cTg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15281200	15281200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			908	79	539	0	ENST00000263388.2:c.5056G>A	p.Val1686Met	p.V1686M	ENST00000263388	NM_000435.2	1686	Gtg/Atg																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42870094	42870094	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	223	282	0	ENST00000398585.3:c.78C>G	p.Tyr26Ter	p.Y26*	ENST00000398585	NM_001135099.1	26	taC/taG																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162731104	162731105	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1128	69	570	0	ENST00000367921.3:c.964dupC	p.Leu322ProfsTer5	p.L322Pfs*5	ENST00000367921	NM_006182.2	320	ttc/ttCc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187541578	187541579	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	236	381	1	ENST00000441802.2:c.6161_6162delCA	p.Thr2054ArgfsTer4	p.T2054Rfs*4	ENST00000441802	NM_005245.3	2054	aCA/a																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176696802	176696802	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	117	184	0	ENST00000439151.2:c.5508delA	p.Ala1837LeufsTer12	p.A1837Lfs*12	ENST00000439151	NM_022455.4	1835	Aaa/aa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874092	151874093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1330	261	536	0	ENST00000262189.6:c.8445dupA	p.Ser2816IlefsTer6	p.S2816Ifs*6	ENST00000262189	NM_170606.2	2815	-/A																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3786045	3786045	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1066	209	572	0	ENST00000262367.5:c.4720delA	p.Thr1574ProfsTer61	p.T1574Pfs*61	ENST00000262367	NM_004380.2	1574	Acc/cc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	163	490	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	52	194	0	ENST00000304494.5:c.251A>G	p.Asp84Gly	p.D84G	ENST00000304494	NM_000077.4	84	gAc/gGc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	52	194	0	ENST00000304494.5:c.251A>G	p.Asp84Gly	p.D84G	ENST00000304494	NM_000077.4	84	gAc/gGc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41545060	41545060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	52	490	4	ENST00000263253.7:c.2260C>T	p.Arg754Cys	p.R754C	ENST00000263253	NM_001429.3	754	Cgt/Tgt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11190603	11190603	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	36	434	0	ENST00000361445.4:c.5596C>T	p.Gln1866Ter	p.Q1866*	ENST00000361445	NM_004958.3	1866	Cag/Tag																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	176050349	176050349	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	12	539	2	ENST00000367669.3:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000367669	NM_022457.5	406	Cga/Tga																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32185013	32185013	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	22	548	0	ENST00000375023.3:c.1655T>C	p.Ile552Thr	p.I552T	ENST00000375023	NM_004557.3	552	aTc/aCc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117710744	117710744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	29	465	0	ENST00000368508.3:c.1528C>T	p.Leu510Phe	p.L510F	ENST00000368508	NM_002944.2	510	Ctt/Ttt																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6043624	6043624	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	13	238	0	ENST00000265849.7:c.229G>T	p.Glu77Ter	p.E77*	ENST00000265849	NM_000535.5	77	Gaa/Taa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578196	7578197	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0010235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	83	588	0	ENST00000269305.4:c.651_652dup	p.Val218GlyfsTer30	p.V218Gfs*30	ENST00000269305	NM_001126112.2	218	gtg/gGGtg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	65	573	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	45	295	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	65	243	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	101	432	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	67	565	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	18	604	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	133	573	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41744385	41744385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	73	515	2	ENST00000301178.4:c.1010delC	p.Pro337LeufsTer29	p.P337Lfs*29	ENST00000301178	NM_021913.4	335	ggC/gg																																												NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	55	405	1	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128199957	128199957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	33	383	1	ENST00000341105.2:c.1348G>A	p.Gly450Arg	p.G450R	ENST00000341105	NM_032638.4	450	Gga/Aga																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435138	110435138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	132	764	1	ENST00000375856.3:c.3263C>T	p.Ala1088Val	p.A1088V	ENST00000375856	NM_003749.2	1088	gCg/gTg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133218282	133218282	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	131	589	0	ENST00000320574.5:c.5329A>G	p.Ser1777Gly	p.S1777G	ENST00000320574	NM_006231.2	1777	Agt/Ggt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	72	366	0	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																												NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	214	585	3	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16260960	16260960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	83	351	0	ENST00000375759.3:c.8225C>T	p.Thr2742Ile	p.T2742I	ENST00000375759	NM_015001.2	2742	aCa/aTa																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65330565	65330565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	91	480	0	ENST00000342505.4:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000342505	NM_002227.2	361	Gaa/Aaa																																												NEWRECORD																																		
CCND1	595	MSKCC	GRCh37	11	69466027	69466035	+	inframe_deletion	In_Frame_Del	DEL	GACGTGCGG	GACGTGCGG	-			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	100	685	0	ENST00000227507.2:c.871_879del	p.Arg291_Val293del	p.R291_V293del	ENST00000227507	NM_053056.2	289	GACGTGCGG/-																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108123616	108123616	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	26	330	0	ENST00000278616.4:c.1880del	p.Phe627SerfsTer22	p.F627Sfs*22	ENST00000278616	NM_000051.3	625	aaT/aa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108183212	108183212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	48	303	0	ENST00000278616.4:c.5993G>T	p.Gly1998Val	p.G1998V	ENST00000278616	NM_000051.3	1998	gGa/gTa																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90631606	90631606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	113	516	0	ENST00000330062.3:c.663G>A	p.Met221Ile	p.M221I	ENST00000330062	NM_002168.2	221	atG/atA																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207152	1207153	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAG			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	107	738	1	ENST00000326873.7:c.250_252dup	p.Lys84dup	p.K84dup	ENST00000326873	NM_000455.4	84	-/AAG																																												NEWRECORD																																		
KMT2B	9757	MSKCC	GRCh37	19	36210764	36210764	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	240	796	0	ENST00000222270.7:c.521del	p.Pro174GlnfsTer20	p.P174Qfs*20	ENST00000222270	NM_014727.1	172	aCc/ac																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61708414	61708414	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	53	272	0	ENST00000401558.2:c.2975C>T	p.Ala992Val	p.A992V	ENST00000401558	NM_003400.3	992	gCt/gTt																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467391	66467391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	50	202	0	ENST00000273854.3:c.878C>T	p.Ala293Val	p.A293V	ENST00000273854	NM_004439.5	293	gCa/gTa																																												NEWRECORD																																		
STK19	0	MSKCC	GRCh37	6	31948502	31948502	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201134143		P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	50	311	0	ENST00000375331.2:c.973C>T	p.Arg325Trp	p.R325W	ENST00000375331	NM_004197.1	325	Cgg/Tgg																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55370949	55370950	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	171	685	0	ENST00000297316.4:c.252dup	p.Arg85AlafsTer77	p.R85Afs*77	ENST00000297316	NM_022454.3	84	aag/aaGg																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123164817	123164817	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014495-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	45	253	0	ENST00000218089.9:c.135del	p.Gly46AlafsTer25	p.G46Afs*25	ENST00000218089	NM_001042749.1	44	Aaa/aa																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	253	583	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	146	355	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	206	345	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	107	229	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121434070	121434070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	267	541	5	ENST00000257555.6:c.961C>T	p.Arg321Cys	p.R321C	ENST00000257555		321	Cgc/Tgc																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	159	304	3	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	272	446	1	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93639995	93639995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	161	348	0	ENST00000375746.1:c.1324G>A	p.Glu442Lys	p.E442K	ENST00000375746	NM_001174167.1	442	Gag/Aag																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	165	277	0	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35875627	35875627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	150	311	0	ENST00000303115.3:c.814G>A	p.Val272Ile	p.V272I	ENST00000303115	NM_002185.3	272	Gta/Ata																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56440904	56440904	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	287	526	0	ENST00000407977.2:c.433C>T	p.Arg145Ter	p.R145*	ENST00000407977		145	Cga/Tga																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	16	167	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	147	365	0	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																												NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	248	596	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																												NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	129	281	2	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	152	232	0	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86679546	86679546	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	109	177	0	ENST00000274376.6:c.2707C>T	p.Arg903Ter	p.R903*	ENST00000274376	NM_002890.2	903	Cga/Tga																																												NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	203	424	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	216	476	2	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106513012	106513012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	117	302	0	ENST00000359195.3:c.2026G>A	p.Ala676Thr	p.A676T	ENST00000359195	NM_002649.2	676	Gcc/Acc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2210737	2210737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	190	532	1	ENST00000398665.3:c.1234G>A	p.Gly412Arg	p.G412R	ENST00000398665	NM_032482.2	412	Ggg/Agg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	161	359	0	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372205	55372205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	49	131	0	ENST00000297316.4:c.895G>A	p.Ala299Thr	p.A299T	ENST00000297316	NM_022454.3	299	Gcg/Acg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	115	254	0	ENST00000375759.3:c.9950delC	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435815	56435815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	122	218	0	ENST00000407977.2:c.1322delC	p.Pro441LeufsTer61	p.P441Lfs*61	ENST00000407977		441	cCt/ct																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	201	379	0	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																												NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	271	649	6	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	745962	745963	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	94	276	0	ENST00000314574.4:c.559_560delAG	p.Ser187Ter	p.S187*	ENST00000314574	NM_005433.3	187	AGt/t																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11168304	11168304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	177	405	0	ENST00000361445.4:c.7568C>T	p.Thr2523Met	p.T2523M	ENST00000361445	NM_004958.3	2523	aCg/aTg																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206658344	206658344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139758641		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	128	268	0	ENST00000367120.3:c.1438G>A	p.Val480Met	p.V480M	ENST00000367120	NM_014002.3	480	Gtg/Atg																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241680522	241680522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	329	411	0	ENST00000366560.3:c.227C>T	p.Thr76Met	p.T76M	ENST00000366560	NM_000143.3	76	aCg/aTg																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47657020	47657020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	268	438	0	ENST00000233146.2:c.1216C>T	p.Arg406Ter	p.R406*	ENST00000233146	NM_000251.2	406	Cga/Tga																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41275192	41275192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	146	324	0	ENST00000349496.5:c.1358G>A	p.Arg453Gln	p.R453Q	ENST00000349496	NM_001904.3	453	cGg/cAg																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436344	52436344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	223	490	0	ENST00000460680.1:c.2150G>A	p.Arg717Gln	p.R717Q	ENST00000460680	NM_004656.3	717	cGg/cAg																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	70008432	70008432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	80	167	0	ENST00000352241.4:c.1022G>A	p.Arg341His	p.R341H	ENST00000352241	NM_198159.2	341	cGc/cAc																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71247487	71247487	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	195	410	0	ENST00000318789.4:c.46A>C	p.Ile16Leu	p.I16L	ENST00000318789	NM_032682.5	16	Atc/Ctc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134880871	134880871	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	210	451	0	ENST00000398015.3:c.1434G>T	p.Glu478Asp	p.E478D	ENST00000398015	NM_004441.4	478	gaG/gaT																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	236606	236606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	107	241	0	ENST00000264932.6:c.1324G>A	p.Ala442Thr	p.A442T	ENST00000264932	NM_004168.2	442	Gcc/Acc																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1282640	1282640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	215	454	0	ENST00000310581.5:c.1673G>T	p.Arg558Met	p.R558M	ENST00000310581	NM_198253.2	558	aGg/aTg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38950798	38950798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	90	232	0	ENST00000357387.3:c.3152G>A	p.Arg1051Gln	p.R1051Q	ENST00000357387	NM_152756.3	1051	cGg/cAg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589582	67589582	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	122	198	0	ENST00000274335.5:c.1345T>A	p.Leu449Ile	p.L449I	ENST00000274335		449	Tta/Ata																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131953760	131953760	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	96	170	0	ENST00000265335.6:c.3165-2A>G		p.X1055_splice	ENST00000265335		1055																																													NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30679450	30679450	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	242	432	2	ENST00000376406.3:c.2122C>A	p.Leu708Met	p.L708M	ENST00000376406	NM_014641.2	708	Ctg/Atg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32166817	32166817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	124	292	1	ENST00000375023.3:c.4421G>A	p.Arg1474Gln	p.R1474Q	ENST00000375023	NM_004557.3	1474	cGa/cAa																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652073	36652073	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	220	490	1	ENST00000244741.5:c.195G>A	p.Trp65Ter	p.W65*	ENST00000244741	NM_000389.4	65	tgG/tgA																																												NEWRECORD																																		
VEGFA	0	MSKCC	GRCh37	6	43748510	43748510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1563	456	806	2	ENST00000523873.1:c.464G>A	p.Arg155His	p.R155H	ENST00000523873		155	cGc/cAc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157488310	157488310	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	88	231	0	ENST00000346085.5:c.3016A>C	p.Ser1006Arg	p.S1006R	ENST00000346085	NM_020732.3	1006	Agc/Cgc																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50367296	50367296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	158	282	0	ENST00000331340.3:c.103G>A	p.Glu35Lys	p.E35K	ENST00000331340	NM_006060.4	35	Gag/Aag																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50455073	50455073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	200	321	0	ENST00000331340.3:c.620G>T	p.Gly207Val	p.G207V	ENST00000331340	NM_006060.4	207	gGc/gTc																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128850377	128850377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	126	285	0	ENST00000249373.3:c.1640G>A	p.Arg547His	p.R547H	ENST00000249373	NM_005631.4	547	cGt/cAt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151845364	151845364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	169	339	0	ENST00000262189.6:c.13648G>A	p.Val4550Met	p.V4550M	ENST00000262189	NM_170606.2	4550	Gtg/Atg																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90965824	90965824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	84	322	0	ENST00000265433.3:c.1493C>T	p.Pro498Leu	p.P498L	ENST00000265433	NM_002485.4	498	cCc/cTc																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133747523	133747523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	143	342	0	ENST00000318560.5:c.830C>T	p.Thr277Ile	p.T277I	ENST00000318560	NM_005157.4	277	aCc/aTc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43622146	43622146	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	184	500	0	ENST00000355710.3:c.3163A>G	p.Thr1055Ala	p.T1055A	ENST00000355710	NM_020975.4	1055	Aca/Gca																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114912166	114912166	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1482	426	911	0	ENST00000543371.1:c.1236A>C	p.Gln412His	p.Q412H	ENST00000543371	NM_001198531.1	412	caA/caC																																												NEWRECORD																																		
RPS6KB2	0	MSKCC	GRCh37	11	67202621	67202621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	165	317	1	ENST00000312629.5:c.1430G>A	p.Arg477His	p.R477H	ENST00000312629	NM_003952.2	477	cGt/cAt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420184	49420184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	178	396	1	ENST00000301067.7:c.15565G>A	p.Gly5189Arg	p.G5189R	ENST00000301067	NM_003482.3	5189	Gga/Aga																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426817	49426817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	126	269	0	ENST00000301067.7:c.11671G>A	p.Ala3891Thr	p.A3891T	ENST00000301067	NM_003482.3	3891	Gct/Act																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50484085	50484085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	188	385	1	ENST00000394963.4:c.935G>A	p.Arg312His	p.R312H	ENST00000394963	NM_003076.4	312	cGt/cAt																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133219839	133219839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	121	286	0	ENST00000320574.5:c.4522C>T	p.Arg1508Cys	p.R1508C	ENST00000320574	NM_006231.2	1508	Cgc/Tgc																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28592606	28592606	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	278	609	0	ENST00000241453.7:c.2539A>G	p.Asn847Asp	p.N847D	ENST00000241453	NM_004119.2	847	Aat/Gat																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105238767	105238767	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188580689		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	209	476	0	ENST00000349310.3:c.1195G>A	p.Ala399Thr	p.A399T	ENST00000349310	NM_001014432.1	399	Gcc/Acc																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	205	397	0	ENST00000327367.4:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000327367	NM_005902.3	93	cGa/cAa																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91292842	91292842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	179	324	0	ENST00000355112.3:c.344C>T	p.Pro115Leu	p.P115L	ENST00000355112	NM_000057.2	115	cCg/cTg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821324	72821324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	280	609	0	ENST00000268489.5:c.10851G>A	p.Trp3617Ter	p.W3617*	ENST00000268489	NM_006885.3	3617	tgG/tgA																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72822285	72822285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1285	406	1071	2	ENST00000268489.5:c.9890C>T	p.Ser3297Leu	p.S3297L	ENST00000268489	NM_006885.3	3297	tCg/tTg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72832406	72832406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	339	776	0	ENST00000268489.5:c.4175C>T	p.Pro1392Leu	p.P1392L	ENST00000268489	NM_006885.3	1392	cCg/cTg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89348309	89348309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1749	492	1317	1	ENST00000301030.4:c.4641G>T	p.Lys1547Asn	p.K1547N	ENST00000301030	NM_001256183.1	1547	aaG/aaT																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7979619	7979619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140306846		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	216	419	0	ENST00000319144.4:c.1406G>A	p.Arg469Gln	p.R469Q	ENST00000319144	NM_001139.2	469	cGg/cAg																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15973496	15973496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	203	349	0	ENST00000268712.3:c.4496T>C	p.Met1499Thr	p.M1499T	ENST00000268712	NM_006311.3	1499	aTg/aCg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220394	1220394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	181	567	0	ENST00000326873.7:c.487G>A	p.Gly163Ser	p.G163S	ENST00000326873	NM_000455.4	163	Ggc/Agc																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17943427	17943427	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200784656		P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	259	589	0	ENST00000458235.1:c.2581G>A	p.Gly861Arg	p.G861R	ENST00000458235	NM_000215.3	861	Ggg/Agg																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50917119	50917119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	290	892	0	ENST00000440232.2:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000440232	NM_002691.3	791	Cgg/Tgg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41572305	41572305	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	200	409	0	ENST00000263253.7:c.4834A>G	p.Ile1612Val	p.I1612V	ENST00000263253	NM_001429.3	1612	Att/Gtt																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44929133	44929133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	280	534	1	ENST00000377967.4:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000377967	NM_021140.2	745	Gag/Aag																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47426104	47426104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	387	779	0	ENST00000377045.4:c.624G>T	p.Gln208His	p.Q208H	ENST00000377045	NM_001654.4	208	caG/caT																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47428265	47428265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	209	538	1	ENST00000377045.4:c.1225G>A	p.Val409Met	p.V409M	ENST00000377045	NM_001654.4	409	Gtg/Atg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70347906	70347906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1285	369	755	0	ENST00000374080.3:c.3145A>G	p.Asn1049Asp	p.N1049D	ENST00000374080		1049	Aac/Gac																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151873929	151873929	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	179	406	0	ENST00000262189.6:c.8609del	p.Leu2870CysfsTer36	p.L2870Cfs*36	ENST00000262189	NM_170606.2	2870	tTg/tg																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98231419	98231420	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	65	177	0	ENST00000331920.6:c.1863_1864del	p.Arg621SerfsTer5	p.R621Sfs*5	ENST00000331920	NM_000264.3	621	agAGtg/agtg																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64572092	64572093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	268	719	0	ENST00000337652.1:c.1561dupC	p.Arg521ProfsTer15	p.R521Pfs*15	ENST00000337652	NM_130803.2	521	cgg/cCgg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434354	49434354	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	154	359	2	ENST00000301067.7:c.7199del	p.Pro2400LeufsTer26	p.P2400Lfs*26	ENST00000301067	NM_003482.3	2400	cCt/ct																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39617679	39617680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	144	335	0	ENST00000262039.4:c.1869dup	p.Lys624Ter	p.K624*	ENST00000262039	NM_002647.2	621	-/T																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86564680	86564680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	164	380	1	ENST00000274376.6:c.416delC	p.Pro139LeufsTer35	p.P139Lfs*35	ENST00000274376	NM_002890.2	138	Ccc/cc																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25991625	25991626	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	158	290	0	ENST00000435504.4:c.616_617del	p.Val206ThrfsTer13	p.V206Tfs*13	ENST00000435504		206	GTa/a																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643791	52643791	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	197	288	0	ENST00000394830.3:c.2105del	p.Lys702SerfsTer12	p.K702Sfs*12	ENST00000394830	NM_018313.4	702	aAg/ag																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48953741	48953742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	181	353	0	ENST00000267163.4:c.1346dupG	p.Val450SerfsTer13	p.V450Sfs*13	ENST00000267163	NM_000321.2	448	-/G																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	255	633	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157528276	157528276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	86	559	0	ENST00000346085.5:c.6001G>A	p.Glu2001Lys	p.E2001K	ENST00000346085	NM_020732.3	2001	Gag/Aag																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156845922	156845922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1400	171	651	0	ENST00000524377.1:c.1552G>A	p.Glu518Lys	p.E518K	ENST00000524377	NM_002529.3	518	Gag/Aag																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16247363	16247363	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	70	287	0	ENST00000375759.3:c.1636-2A>T		p.X546_splice	ENST00000375759	NM_015001.2	546																																													NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119077153	119077153	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	75	276	0	ENST00000264033.4:c.26C>G	p.Ser9Cys	p.S9C	ENST00000264033	NM_005188.3	9	tCt/tGt																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12006361	12006361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	80	488	1	ENST00000396373.4:c.329G>T	p.Gly110Val	p.G110V	ENST00000396373	NM_001987.4	110	gGt/gTt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32900403	32900403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	102	607	0	ENST00000380152.3:c.500C>T	p.Thr167Ile	p.T167I	ENST00000380152		167	aCa/aTa																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060949	38060949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	140	273	0	ENST00000250448.2:c.1040C>T	p.Ser347Leu	p.S347L	ENST00000250448	NM_004496.3	347	tCg/tTg																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	396698	396698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	96	538	0	ENST00000262320.3:c.328G>T	p.Gly110Cys	p.G110C	ENST00000262320	NM_003502.3	110	Ggc/Tgc																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14022087	14022087	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	80	331	0	ENST00000311895.7:c.787G>C	p.Asp263His	p.D263H	ENST00000311895	NM_005236.2	263	Gac/Cac																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41226500	41226500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	180	445	0	ENST00000357654.3:c.4523G>A	p.Trp1508Ter	p.W1508*	ENST00000357654	NM_007294.3	1508	tGg/tAg																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40742002	40742002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1556	271	425	0	ENST00000392038.2:c.970G>T	p.Asp324Tyr	p.D324Y	ENST00000392038	NM_001626.4	324	Gac/Tac																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185181353	185181353	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	85	527	0	ENST00000265026.3:c.1294G>T	p.Glu432Ter	p.E432*	ENST00000265026	NM_004721.4	432	Gaa/Taa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176707641	176707641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	106	434	0	ENST00000439151.2:c.5698A>G	p.Thr1900Ala	p.T1900A	ENST00000439151	NM_022455.4	1900	Act/Gct																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180045806	180045806	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	100	546	0	ENST00000261937.6:c.2965G>T	p.Glu989Ter	p.E989*	ENST00000261937	NM_182925.4	989	Gag/Tag																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116339262	116339262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	153	614	0	ENST00000397752.3:c.124C>T	p.Gln42Ter	p.Q42*	ENST00000397752	NM_000245.2	42	Cag/Tag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44733177	44733177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	63	531	0	ENST00000377967.4:c.169T>C	p.Phe57Leu	p.F57L	ENST00000377967	NM_021140.2	57	Ttt/Ctt																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76949368	76949369	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0013604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1316	77	767	0	ENST00000373344.5:c.428_429delinsTT	p.Gly143Val	p.G143V	ENST00000373344	NM_000489.3	143	gGG/gTT																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226552821	226552821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182639036		P-0011188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	129	397	0	ENST00000366794.5:c.2540G>A	p.Arg847His	p.R847H	ENST00000366794	NM_001618.3	847	cGt/cAt																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061211	38061212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0011188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	142	309	0	ENST00000250448.2:c.777_778insAG	p.Leu260SerfsTer62	p.L260Sfs*62	ENST00000250448	NM_004496.3	259	-/AG																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	29	50	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	77	187	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	74	185	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
HIST1H3C	0	MSKCC	GRCh37	6	26045688	26045688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	165	702	2	ENST00000540144.1:c.50C>T	p.Pro17Leu	p.P17L	ENST00000540144	NM_003531.2	17	cCg/cTg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68847400	68847400	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0003388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	199	337	0	ENST00000261769.5:c.1320+2T>G		p.X440_splice	ENST00000261769	NM_004360.3	440																																													NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41243995	41243995	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	78	379	0	ENST00000357654.3:c.3553G>C	p.Glu1185Gln	p.E1185Q	ENST00000357654	NM_007294.3	1185	Gag/Cag																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41566424	41566424	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	208	380	0	ENST00000263253.7:c.4301A>G	p.His1434Arg	p.H1434R	ENST00000263253	NM_001429.3	1434	cAt/cGt																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123171455	123171455	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	89	490	0	ENST00000218089.9:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000218089	NM_001042749.1	123	Cag/Tag																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123220546	123220546	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	118	610	0	ENST00000218089.9:c.3203C>A	p.Ser1068Ter	p.S1068*	ENST00000218089	NM_001042749.1	1068	tCa/tAa																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41574883	41574884	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	241	484	0	ENST00000263253.7:c.7170dup	p.Thr2391HisfsTer9	p.T2391Hfs*9	ENST00000263253	NM_001429.3	2390	gcc/gCcc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44820585	44820585	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	215	593	0	ENST00000377967.4:c.284del	p.Phe95SerfsTer5	p.F95Sfs*5	ENST00000377967	NM_021140.2	94	gaT/ga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	135	245	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12871063	12871063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	62	195	1	ENST00000228872.4:c.290G>A	p.Gly97Asp	p.G97D	ENST00000228872	NM_004064.3	97	gGt/gAt																																												NEWRECORD																																		
SRSF2	0	MSKCC	GRCh37	17	74732361	74732361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1574	196	1052	0	ENST00000359995.5:c.548C>A	p.Ser183Tyr	p.S183Y	ENST00000359995	NM_001195427.1	183	tCc/tAc																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24176329	24176329	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	106	503	1	ENST00000263121.7:c.1120C>T	p.Arg374Trp	p.R374W	ENST00000263121	NM_003073.3	374	Cgg/Tgg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41551082	41551082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	163	787	0	ENST00000263253.7:c.3226C>A	p.Arg1076Ser	p.R1076S	ENST00000263253	NM_001429.3	1076	Cgt/Agt																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8074254	8074255	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0008709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1397	192	1272	0	ENST00000377482.5:c.403_404dup	p.Asn135LysfsTer41	p.N135Kfs*41	ENST00000377482	NM_018948.3	135	aac/aaAAc																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110250125	110250125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	22	273	0	ENST00000374672.4:c.550C>G	p.Pro184Ala	p.P184A	ENST00000374672	NM_004235.4	184	Ccc/Gcc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49418616	49418616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	72	499	0	ENST00000301067.7:c.15898G>A	p.Ala5300Thr	p.A5300T	ENST00000301067	NM_003482.3	5300	Gcc/Acc																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12871063	12871064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	48	258	0	ENST00000228872.4:c.291dup	p.Ala98CysfsTer27	p.A98Cfs*27	ENST00000228872	NM_004064.3	97	ggt/ggTt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002155-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			586	80	182	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002155-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	105	225	1	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175492	112175493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002155-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	114	158	0	ENST00000257430.4:c.4203dup	p.Ala1402CysfsTer7	p.A1402Cfs*7	ENST00000257430	NM_000038.5	1401	att/aTtt																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			252	168	642	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227660220	227660220	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148962208		P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			414	223	510	0	ENST00000305123.5:c.3235C>T	p.Pro1079Ser	p.P1079S	ENST00000305123	NM_005544.2	1079	Cct/Tct																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			80	86	515	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			444	234	674	5	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			82	178	416	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			245	89	240	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																												NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			290	117	369	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			79	177	400	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			248	118	441	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																												NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			709	292	1169	12	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209514	98209514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			366	177	413	1	ENST00000331920.6:c.4024C>T	p.Arg1342Cys	p.R1342C	ENST00000331920	NM_000264.3	1342	Cgc/Tgc																																												NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			343	157	570	5	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			272	122	706	1	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																												NEWRECORD																																		
FOXL2	0	MSKCC	GRCh37	3	138664761	138664761	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			67	44	99	0	ENST00000330315.3:c.804del	p.Gly269AlafsTer2	p.G269Afs*2	ENST00000330315	NM_023067.3	268	ccC/cc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142269074	142269074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			348	183	578	0	ENST00000350721.4:c.2876T>C	p.Val959Ala	p.V959A	ENST00000350721	NM_001184.3	959	gTg/gCg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187560916	187560916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			275	175	542	0	ENST00000441802.2:c.3602G>T	p.Arg1201Met	p.R1201M	ENST00000441802	NM_005245.3	1201	aGg/aTg																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652015	36652015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			376	215	448	2	ENST00000244741.5:c.137G>A	p.Arg46His	p.R46H	ENST00000244741	NM_000389.4	46	cGt/cAt																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117864309	117864309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			322	164	680	1	ENST00000297338.2:c.1348C>T	p.Arg450Cys	p.R450C	ENST00000297338	NM_006265.2	450	Cgc/Tgc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118366990	118366990	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			396	198	633	1	ENST00000534358.1:c.5572C>T	p.Arg1858Ter	p.R1858*	ENST00000534358	NM_005933.3	1858	Cga/Tga																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115117431	115117431	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			237	107	524	0	ENST00000257566.3:c.743A>G	p.Tyr248Cys	p.Y248C	ENST00000257566	NM_016569.3	248	tAc/tGc																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81819655	81819655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			909	293	920	3	ENST00000359376.3:c.61G>A	p.Ala21Thr	p.A21T	ENST00000359376	NM_002661.3	21	Gcc/Acc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5245891	5245891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			205	537	760	1	ENST00000357368.4:c.884G>A	p.Arg295Gln	p.R295Q	ENST00000357368	NM_002850.3	295	cGg/cAg																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118365074	118365075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			311	143	501	0	ENST00000534358.1:c.5256dup	p.Ala1753SerfsTer32	p.A1753Sfs*32	ENST00000534358	NM_005933.3	1750	-/A																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50444437	50444437	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			224	96	278	0	ENST00000331340.3:c.369del	p.Ile124SerfsTer69	p.I124Sfs*69	ENST00000331340	NM_006060.4	123	Ggg/gg																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37042482	37042482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			462	249	711	0	ENST00000231790.2:c.244A>G	p.Thr82Ala	p.T82A	ENST00000231790	NM_000249.3	82	Act/Gct																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55161434	55161434	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			348	135	621	0	ENST00000257290.5:c.3265C>A	p.Leu1089Met	p.L1089M	ENST00000257290	NM_006206.4	1089	Ctg/Atg																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056413	26056413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			428	30	328	0	ENST00000343677.2:c.244C>T	p.Leu82Phe	p.L82F	ENST00000343677	NM_005319.3	82	Ctt/Ttt																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98222053	98222053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			243	133	282	0	ENST00000331920.6:c.2716C>T	p.Arg906Cys	p.R906C	ENST00000331920	NM_000264.3	906	Cgt/Tgt																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43615577	43615577	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146838520		P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			410	216	602	0	ENST00000355710.3:c.2656C>T	p.Arg886Trp	p.R886W	ENST00000355710	NM_020975.4	886	Cgg/Tgg																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94224039	94224039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			239	149	513	0	ENST00000323929.3:c.113T>C	p.Val38Ala	p.V38A	ENST00000323929	NM_005591.3	38	gTa/gCa																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110437395	110437395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			84	52	103	1	ENST00000375856.3:c.1006A>G	p.Thr336Ala	p.T336A	ENST00000375856	NM_003749.2	336	Acg/Gcg																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95582064	95582064	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			266	143	637	0	ENST00000343455.3:c.1847T>C	p.Leu616Ser	p.L616S	ENST00000343455	NM_177438.2	616	tTg/tCg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3779131	3779131	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			399	21	357	0	ENST00000262367.5:c.5917T>C	p.Tyr1973His	p.Y1973H	ENST00000262367	NM_004380.2	1973	Tac/Cac																																												NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8109917	8109917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			473	198	483	0	ENST00000585124.1:c.578G>A	p.Gly193Glu	p.G193E	ENST00000585124	NM_004217.3	193	gGg/gAg																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38512459	38512459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			348	124	384	0	ENST00000254066.5:c.1370C>T	p.Pro457Leu	p.P457L	ENST00000254066	NM_000964.3	457	cCg/cTg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2210756	2210756	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			441	265	724	0	ENST00000398665.3:c.1253A>G	p.Asn418Ser	p.N418S	ENST00000398665	NM_032482.2	418	aAc/aGc																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17946845	17946845	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			394	219	599	0	ENST00000458235.1:c.1802A>G	p.Glu601Gly	p.E601G	ENST00000458235	NM_000215.3	601	gAa/gGa																																												NEWRECORD																																		
MEF2B	0	MSKCC	GRCh37	19	19260198	19260198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			383	229	609	1	ENST00000162023.5:c.95C>T	p.Ala32Val	p.A32V	ENST00000162023		32	gCc/gTc																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37884218	37884218	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			435	195	481	1	ENST00000269571.5:c.3694delG	p.Ala1232LeufsTer70	p.A1232Lfs*70	ENST00000269571		1230	cGg/cg																																												NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215646084	215646085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs746325928		P-0004910-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			256	19	469	1	ENST00000260947.4:c.513dup	p.Asp172ArgfsTer10	p.D172Rfs*10	ENST00000260947	NM_000465.2	171	-/A																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	59	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007620	45007620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	46	279	0	ENST00000558401.1:c.68-1G>T		p.X23_splice	ENST00000558401	NM_004048.2	23																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	111	475	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173847	112173848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	88	432	0	ENST00000257430.4:c.2563_2564dup	p.Arg856AsnfsTer6	p.R856Nfs*6	ENST00000257430	NM_000038.5	852	-/GA																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	343507	343507	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	135	561	1	ENST00000262320.3:c.2167C>T	p.Arg723Ter	p.R723*	ENST00000262320	NM_003502.3	723	Cga/Tga																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	94	397	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77090327	77090327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	145	613	0	ENST00000356341.3:c.398C>T	p.Ser133Leu	p.S133L	ENST00000356341	NM_002576.4	133	tCg/tTg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	103	399	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52716217	52716217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	126	449	3	ENST00000322088.6:c.661C>T	p.Arg221Trp	p.R221W	ENST00000322088	NM_014225.5	221	Cgg/Tgg																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	124	514	2	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2133801	2133801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	110	435	0	ENST00000219476.3:c.3989C>T	p.Thr1330Met	p.T1330M	ENST00000219476	NM_000548.3	1330	aCg/aTg																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	135	577	4	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3832688	3832688	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	118	449	0	ENST00000262367.5:c.1570delC	p.Leu524TrpfsTer6	p.L524Wfs*6	ENST00000262367	NM_004380.2	524	Ctg/tg																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145737820	145737820	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36023964		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	81	371	1	ENST00000428558.2:c.3010C>T	p.Arg1004Trp	p.R1004W	ENST00000428558	NM_004260.3	1004	Cgg/Tgg																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	226	752	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16262654	16262654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	54	274	1	ENST00000375759.3:c.9919C>T	p.Arg3307Trp	p.R3307W	ENST00000375759	NM_015001.2	3307	Cgg/Tgg																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	69990480	69990480	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	85	393	0	ENST00000352241.4:c.760A>G	p.Thr254Ala	p.T254A	ENST00000352241	NM_198159.2	254	Acg/Gcg																																												NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803222	1803222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	123	552	1	ENST00000260795.2:c.574G>A	p.Gly192Ser	p.G192S	ENST00000260795		192	Ggc/Agc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187628571	187628571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	159	580	2	ENST00000441802.2:c.2411C>T	p.Ala804Val	p.A804V	ENST00000441802	NM_005245.3	804	gCg/gTg																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176517774	176517774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	187	727	1	ENST00000292408.4:c.384G>T	p.Glu128Asp	p.E128D	ENST00000292408	NM_213647.1	128	gaG/gaT																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32170313	32170313	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	104	481	0	ENST00000375023.3:c.3295G>T	p.Gly1099Ter	p.G1099*	ENST00000375023	NM_004557.3	1099	Gga/Tga																																												NEWRECORD																																		
CCND3	0	MSKCC	GRCh37	6	41904359	41904359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	102	462	0	ENST00000372991.4:c.649G>A	p.Ala217Thr	p.A217T	ENST00000372991	NM_001760.3	217	Gcc/Acc																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2976706	2976706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	114	351	0	ENST00000396946.4:c.1306C>T	p.Arg436Trp	p.R436W	ENST00000396946	NM_032415.4	436	Cgg/Tgg																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93627378	93627378	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201994789		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	83	500	0	ENST00000375746.1:c.845C>T	p.Ala282Val	p.A282V	ENST00000375746	NM_001174167.1	282	gCg/gTg																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249887	110249887	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	34	214	0	ENST00000374672.4:c.788T>C	p.Val263Ala	p.V263A	ENST00000374672	NM_004235.4	263	gTg/gCg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49437199	49437199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	127	504	1	ENST00000301067.7:c.5480C>T	p.Pro1827Leu	p.P1827L	ENST00000301067	NM_003482.3	1827	cCa/cTa																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	339492	339492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	151	645	2	ENST00000262320.3:c.2410G>A	p.Ala804Thr	p.A804T	ENST00000262320	NM_003502.3	804	Gct/Act																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3819346	3819346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	84	279	1	ENST00000262367.5:c.2889G>T	p.Gln963His	p.Q963H	ENST00000262367	NM_004380.2	963	caG/caT																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39584482	39584482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	77	447	1	ENST00000262039.4:c.1147C>T	p.Arg383Trp	p.R383W	ENST00000262039	NM_002647.2	383	Cgg/Tgg																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1612346	1612346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	191	700	0	ENST00000344749.5:c.1673G>A	p.Arg558His	p.R558H	ENST00000344749	NM_001136139.2	558	cGc/cAc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5223251	5223251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	77	238	1	ENST00000357368.4:c.2552G>A	p.Arg851His	p.R851H	ENST00000357368	NM_002850.3	851	cGc/cAc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15350470	15350470	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	73	311	0	ENST00000263377.2:c.3445C>T	p.Arg1149Trp	p.R1149W	ENST00000263377	NM_058243.2	1149	Cgg/Tgg																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45858008	45858008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199778239		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	101	547	0	ENST00000391945.4:c.1645G>A	p.Val549Met	p.V549M	ENST00000391945	NM_000400.3	549	Gtg/Atg																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1620992	1620992	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	190	677	0	ENST00000344749.5:c.1068del	p.Val357TrpfsTer37	p.V357Wfs*37	ENST00000344749	NM_001136139.2	356	ccC/cc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3807363	3807364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	99	423	0	ENST00000262367.5:c.3623dupC	p.Gln1209ThrfsTer25	p.Q1209Tfs*25	ENST00000262367	NM_004380.2	1208	cca/ccCa																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153251985	153251986	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	99	449	0	ENST00000281708.4:c.1020dup	p.Val341SerfsTer22	p.V341Sfs*22	ENST00000281708	NM_033632.3	340	-/A																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150005515	150005515	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	81	399	1	ENST00000253339.5:c.710del	p.Pro237HisfsTer6	p.P237Hfs*6	ENST00000253339		237	cCa/ca																																												NEWRECORD																																		
HIST1H2BD	3017	MSKCC	GRCh37	6	26158465	26158467	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs766586530		P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	127	441	0	ENST00000289316.2:c.73_75del	p.Lys25del	p.K25del	ENST00000289316	NM_138720.2	23	cAGAag/cag																																												NEWRECORD																																		
STAT5B	0	MSKCC	GRCh37	17	40362311	40362311	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	152	725	4	ENST00000293328.3:c.1784del	p.Leu595TrpfsTer4	p.L595Wfs*4	ENST00000293328	NM_012448.3	595	tTg/tg																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145737107	145737109	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	126	546	1	ENST00000428558.2:c.3457_3459delGAG	p.Glu1153del	p.E1153del	ENST00000428558	NM_004260.3	1153	GAG/-																																												NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	36	239	1	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37686901	37686901	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	146	422	0	ENST00000447079.4:c.3810del	p.Gly1271AspfsTer23	p.G1271Dfs*23	ENST00000447079	NM_015083.1	1269	Ccc/cc																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119156070	119156070	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	153	544	0	ENST00000264033.4:c.1739del	p.Pro580LeufsTer35	p.P580Lfs*35	ENST00000264033	NM_005188.3	579	Ccc/cc																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106162524	106162524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	105	366	1	ENST00000380013.4:c.3442delT	p.Tyr1148IlefsTer4	p.Y1148Ifs*4	ENST00000380013	NM_001127208.2	1146	ccT/cc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	87	377	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0012533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	120	642	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372220	55372220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	28	130	0	ENST00000297316.4:c.910G>A	p.Gly304Arg	p.G304R	ENST00000297316	NM_022454.3	304	Ggg/Agg																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55151646	55151647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	84	438	0	ENST00000257290.5:c.2438dup	p.Asn813LysfsTer6	p.N813Kfs*6	ENST00000257290	NM_006206.4	811	tca/tcAa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8518111	8518111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	108	495	0	ENST00000356435.5:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000356435		427	cGa/cAa																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140507774	140507774	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	97	422	0	ENST00000288602.6:c.697A>C	p.Thr233Pro	p.T233P	ENST00000288602	NM_004333.4	233	Aca/Cca																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118374267	118374267	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	118	689	0	ENST00000534358.1:c.7660G>C	p.Glu2554Gln	p.E2554Q	ENST00000534358	NM_005933.3	2554	Gag/Cag																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112891044	112891044	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	377	449	0	ENST00000351677.2:c.378A>T	p.Leu126Phe	p.L126F	ENST00000351677	NM_002834.3	126	ttA/ttT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	156	455	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249012	55249013	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGT			P-0005533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	299	499	0	ENST00000275493.2:c.2310_2311insGGT	p.Asp770_Asn771insGly	p.D770_N771insG	ENST00000275493	NM_005228.3	770	-/GGT																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			283	59	171	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			400	136	272	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27089562	27089562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			732	195	451	1	ENST00000324856.7:c.2518C>T	p.Gln840Ter	p.Q840*	ENST00000324856	NM_006015.4	840	Caa/Taa																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			807	91	362	0	ENST00000269571.5:c.2305G>C	p.Asp769His	p.D769H	ENST00000269571		769	Gac/Cac																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			622	246	381	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67569301	67569301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			528	34	267	0	ENST00000274335.5:c.418G>A	p.Glu140Lys	p.E140K	ENST00000274335		140	Gaa/Aaa																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116339409	116339409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			536	37	263	0	ENST00000397752.3:c.271G>A	p.Glu91Lys	p.E91K	ENST00000397752	NM_000245.2	91	Gaa/Aaa																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458507	120458507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			649	146	290	0	ENST00000256646.2:c.6838C>T	p.Pro2280Ser	p.P2280S	ENST00000256646	NM_024408.3	2280	Cct/Tct																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41101170	41101170	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41279256		P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			435	70	238	0	ENST00000373198.4:c.1186G>A	p.Val396Ile	p.V396I	ENST00000373198	NM_133170.3	396	Gta/Ata																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36651901	36651902	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			516	198	293	1	ENST00000244741.5:c.25dupC	p.Arg9ProfsTer27	p.R9Pfs*27	ENST00000244741	NM_000389.4	8	gtc/gtCc																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43818286	43818286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			824	46	424	0	ENST00000372470.3:c.1751C>A	p.Ser584Tyr	p.S584Y	ENST00000372470	NM_005373.2	584	tCc/tAc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458878	120458878	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			896	234	445	0	ENST00000256646.2:c.6467C>G	p.Ser2156Cys	p.S2156C	ENST00000256646	NM_024408.3	2156	tCt/tGt																																												NEWRECORD																																		
HIST2H3D	0	MSKCC	GRCh37	1	149784859	149784859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			634	36	237	0	ENST00000331491.1:c.378G>C	p.Gln126His	p.Q126H	ENST00000331491	NM_001123375.2	126	caG/caC																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155874563	155874563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	69	437	0	ENST00000368323.3:c.196G>A	p.Asp66Asn	p.D66N	ENST00000368323	NM_006912.5	66	Gat/Aat																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48023174	48023174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1389	128	643	1	ENST00000234420.5:c.599C>T	p.Ser200Leu	p.S200L	ENST00000234420	NM_000179.2	200	tCa/tTa																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61148915	61148915	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			708	55	331	0	ENST00000295025.8:c.1105C>G	p.His369Asp	p.H369D	ENST00000295025	NM_002908.2	369	Cat/Gat																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61149036	61149036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			843	65	385	0	ENST00000295025.8:c.1226C>T	p.Ser409Phe	p.S409F	ENST00000295025	NM_002908.2	409	tCt/tTt																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209101841	209101841	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			852	51	410	0	ENST00000345146.2:c.1207G>C	p.Glu403Gln	p.E403Q	ENST00000345146	NM_005896.2	403	Gaa/Caa																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183766	10183766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			576	51	318	0	ENST00000256474.2:c.235C>G	p.Arg79Gly	p.R79G	ENST00000256474	NM_000551.3	79	Cgc/Ggc																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49933705	49933705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	68	516	0	ENST00000296474.3:c.2572C>T	p.Arg858Cys	p.R858C	ENST00000296474	NM_002447.2	858	Cgc/Tgc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142279187	142279187	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			788	78	332	0	ENST00000350721.4:c.1459A>T	p.Ile487Phe	p.I487F	ENST00000350721	NM_001184.3	487	Att/Ttt																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142279231	142279231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			775	82	318	0	ENST00000350721.4:c.1415C>T	p.Ser472Phe	p.S472F	ENST00000350721	NM_001184.3	472	tCc/tTc																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106162516	106162516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			543	45	261	0	ENST00000380013.4:c.3430G>A	p.Glu1144Lys	p.E1144K	ENST00000380013	NM_001127208.2	1144	Gaa/Aaa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187535405	187535405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			705	48	277	0	ENST00000441802.2:c.9169G>A	p.Glu3057Lys	p.E3057K	ENST00000441802	NM_005245.3	3057	Gaa/Aaa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187557767	187557767	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			650	40	293	0	ENST00000441802.2:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000441802	NM_005245.3	1315	tCa/tGa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177050	112177050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	57	487	0	ENST00000257430.4:c.5759G>A	p.Arg1920Gln	p.R1920Q	ENST00000257430	NM_000038.5	1920	cGa/cAa																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32166818	32166818	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			758	45	359	0	ENST00000375023.3:c.4420C>T	p.Arg1474Ter	p.R1474*	ENST00000375023	NM_004557.3	1474	Cga/Tga																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117650555	117650555	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			805	160	511	0	ENST00000368508.3:c.5303C>G	p.Ser1768Ter	p.S1768*	ENST00000368508	NM_002944.2	1768	tCa/tGa																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116381023	116381023	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			890	71	416	0	ENST00000397752.3:c.1645G>C	p.Glu549Gln	p.E549Q	ENST00000397752	NM_000245.2	549	Gag/Cag																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116395531	116395531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			674	37	337	0	ENST00000397752.3:c.1824G>C	p.Glu608Asp	p.E608D	ENST00000397752	NM_000245.2	608	gaG/gaC																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151891579	151891579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			690	98	328	0	ENST00000262189.6:c.4453G>A	p.Glu1485Lys	p.E1485K	ENST00000262189	NM_170606.2	1485	Gaa/Aaa																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145737112	145737112	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			924	50	374	0	ENST00000428558.2:c.3454G>T	p.Glu1152Ter	p.E1152*	ENST00000428558	NM_004260.3	1152	Gag/Tag																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145742108	145742108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			421	25	186	0	ENST00000428558.2:c.395G>C	p.Arg132Thr	p.R132T	ENST00000428558	NM_004260.3	132	aGa/aCa																																												NEWRECORD																																		
CCND1	0	MSKCC	GRCh37	11	69456120	69456120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			766	67	371	0	ENST00000227507.2:c.39C>G	p.Ile13Met	p.I13M	ENST00000227507	NM_053056.2	13	atC/atG																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100999539	100999539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	96	626	0	ENST00000325455.5:c.263C>G	p.Ser88Cys	p.S88C	ENST00000325455	NM_001202474.3	88	tCc/tGc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108196110	108196110	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			597	64	279	0	ENST00000278616.4:c.6646G>C	p.Asp2216His	p.D2216H	ENST00000278616	NM_000051.3	2216	Gat/Cat																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118342821	118342821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			817	52	344	0	ENST00000534358.1:c.947C>T	p.Ser316Leu	p.S316L	ENST00000534358	NM_005933.3	316	tCg/tTg																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119144697	119144697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			634	44	316	0	ENST00000264033.4:c.710C>T	p.Ser237Leu	p.S237L	ENST00000264033	NM_005188.3	237	tCg/tTg																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119146791	119146791	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			840	56	381	0	ENST00000264033.4:c.954C>G	p.Ile318Met	p.I318M	ENST00000264033	NM_005188.3	318	atC/atG																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32910767	32910767	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			961	54	469	0	ENST00000380152.3:c.2275C>G	p.Leu759Val	p.L759V	ENST00000380152		759	Ctt/Gtt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32972384	32972384	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			684	42	299	0	ENST00000380152.3:c.9734C>G	p.Ser3245Ter	p.S3245*	ENST00000380152		3245	tCa/tGa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42003068	42003068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	102	568	1	ENST00000219905.7:c.2605G>A	p.Asp869Asn	p.D869N	ENST00000219905	NM_001164273.1	869	Gat/Aat																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99465517	99465517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			890	72	416	0	ENST00000268035.6:c.2342G>A	p.Arg781Lys	p.R781K	ENST00000268035	NM_000875.3	781	aGa/aAa																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99482465	99482465	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			676	125	388	0	ENST00000268035.6:c.3333G>C	p.Lys1111Asn	p.K1111N	ENST00000268035	NM_000875.3	1111	aaG/aaC																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991611	72991611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	55	498	0	ENST00000268489.5:c.2434G>C	p.Glu812Gln	p.E812Q	ENST00000268489	NM_006885.3	812	Gag/Cag																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72992138	72992138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			830	59	489	0	ENST00000268489.5:c.1907C>T	p.Ser636Leu	p.S636L	ENST00000268489	NM_006885.3	636	tCg/tTg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89351286	89351286	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	66	535	0	ENST00000301030.4:c.1664C>G	p.Ser555Cys	p.S555C	ENST00000301030	NM_001256183.1	555	tCt/tGt																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89825063	89825063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			823	86	421	3	ENST00000389301.3:c.2903C>T	p.Ser968Leu	p.S968L	ENST00000389301	NM_000135.2	968	tCg/tTg																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89838108	89838108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			763	75	397	0	ENST00000389301.3:c.2129G>C	p.Arg710Thr	p.R710T	ENST00000389301	NM_000135.2	710	aGa/aCa																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31381365	31381365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			583	36	289	0	ENST00000328111.2:c.1090C>T	p.Arg364Cys	p.R364C	ENST00000328111	NM_006892.3	364	Cgt/Tgt																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46266522	46266522	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			665	42	313	0	ENST00000371998.3:c.2507C>G	p.Ser836Cys	p.S836C	ENST00000371998		836	tCt/tGt																																												NEWRECORD																																		
MAPK1	0	MSKCC	GRCh37	22	22160206	22160206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			838	76	361	0	ENST00000215832.6:c.425C>T	p.Ser142Leu	p.S142L	ENST00000215832	NM_002745.4	142	tCa/tTa																																												NEWRECORD																																		
SH2D1A	0	MSKCC	GRCh37	X	123504098	123504098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006926-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			361	34	192	0	ENST00000371139.4:c.274C>G	p.Gln92Glu	p.Q92E	ENST00000371139	NM_001114937.2	92	Caa/Gaa																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	241	448	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	230	322	0	ENST00000269305.4:c.724T>C	p.Cys242Arg	p.C242R	ENST00000269305	NM_001126112.2	242	Tgc/Cgc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157405905	157405905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	125	357	0	ENST00000346085.5:c.2147C>T	p.Ala716Val	p.A716V	ENST00000346085	NM_020732.3	716	gCg/gTg																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	95	401	0	ENST00000435504.4:c.2333dupC	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170772	112170772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	120	575	0	ENST00000257430.4:c.1868G>A	p.Arg623Gln	p.R623Q	ENST00000257430	NM_000038.5	623	cGg/cAg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249079	55249079	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014557-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			829	353	539	0	ENST00000275493.2:c.2377A>C	p.Met793Leu	p.M793L	ENST00000275493	NM_005228.3	793	Atg/Ctg																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43604493	43604493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	269	574	0	ENST00000355710.3:c.1078C>T	p.Arg360Trp	p.R360W	ENST00000355710	NM_020975.4	360	Cgg/Tgg																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	224	620	1	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																												NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47144880	47144880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	518	589	4	ENST00000409792.3:c.4873C>T	p.Arg1625Cys	p.R1625C	ENST00000409792	NM_014159.6	1625	Cgt/Tgt																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50912125	50912125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	374	779	5	ENST00000440232.2:c.1859C>T	p.Thr620Met	p.T620M	ENST00000440232	NM_002691.3	620	aCg/aTg																																												NEWRECORD																																		
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			304	181	387	3	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																												NEWRECORD																																		
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	223	512	4	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	416796	416796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	374	395	0	ENST00000399788.2:c.3754C>T	p.Arg1252Cys	p.R1252C	ENST00000399788	NM_001042603.1	1252	Cgt/Tgt																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42054541	42054541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			144	207	467	2	ENST00000219905.7:c.7731delA	p.Asp2578ThrfsTer10	p.D2578Tfs*10	ENST00000219905	NM_001164273.1	2575	agA/ag																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43596093	43596093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	270	655	9	ENST00000355710.3:c.260G>A	p.Cys87Tyr	p.C87Y	ENST00000355710	NM_020975.4	87	tGc/tAc																																												NEWRECORD																																		
TP53BP1	7158	MSKCC	GRCh37	15	43748661	43748661	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1375740992		P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	338	869	7	ENST00000382044.4:c.2145del	p.Glu716AsnfsTer12	p.E716Nfs*12	ENST00000382044	NM_001141980.1	715	aaA/aa																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	347903	347903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	451	947	3	ENST00000262320.3:c.1603G>A	p.Val535Ile	p.V535I	ENST00000262320	NM_003502.3	535	Gtc/Atc																																												NEWRECORD																																		
CYLD	1540	MSKCC	GRCh37	16	50825519	50825519	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	35	550	1	ENST00000398568.2:c.2156del	p.Asn719MetfsTer13	p.N719Mfs*13	ENST00000398568	NM_001042412.1	717	gAa/ga																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16004934	16004935	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	315	650	2	ENST00000268712.3:c.2319dupA	p.Pro774ThrfsTer3	p.P774Tfs*3	ENST00000268712	NM_006311.3	773	-/A																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41243743	41243743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	270	616	0	ENST00000357654.3:c.3805G>A	p.Asp1269Asn	p.D1269N	ENST00000357654	NM_007294.3	1269	Gac/Aac																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2222274	2222274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	367	798	1	ENST00000398665.3:c.3106G>T	p.Asp1036Tyr	p.D1036Y	ENST00000398665	NM_032482.2	1036	Gat/Tat																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15374337	15374337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	307	726	1	ENST00000263377.2:c.1235A>G	p.Tyr412Cys	p.Y412C	ENST00000263377	NM_058243.2	412	tAc/tGc																																												NEWRECORD																																		
MLL4	0	MSKCC	GRCh37	19	36212191	36212191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	259	614	4	ENST00000222270.7:c.1942C>T	p.Arg648Trp	p.R648W	ENST00000222270	NM_014727.1	648	Cgg/Tgg																																												NEWRECORD																																		
ERF	0	MSKCC	GRCh37	19	42754583	42754583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	310	688	3	ENST00000222329.4:c.157G>A	p.Gly53Arg	p.G53R	ENST00000222329	NM_006494.2	53	Ggg/Agg																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50916737	50916737	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	266	628	1	ENST00000440232.2:c.2209T>A	p.Ser737Thr	p.S737T	ENST00000440232	NM_002691.3	737	Tct/Act																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178095601	178095602	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AATAAGGTTTT			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	156	501	0	ENST00000397062.3:c.1719_1729dupAAAACCTTATT	p.Ser577Ter	p.S577*	ENST00000397062	NM_006164.4	577	tct/tAAAACCTTATTct																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178095619	178095620	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATCA			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	173	543	0	ENST00000397062.3:c.1707_1711dupTGATG	p.Glu571ValfsTer43	p.E571Vfs*43	ENST00000397062	NM_006164.4	571	gaa/gTGATGaa																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24167562	24167562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	275	572	8	ENST00000263121.7:c.946C>T	p.Arg316Trp	p.R316W	ENST00000263121	NM_003073.3	316	Cgg/Tgg																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29105996	29105996	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			278	155	380	1	ENST00000328354.6:c.844C>A	p.His282Asn	p.H282N	ENST00000328354	NM_007194.3	282	Cat/Aat																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30691893	30691893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	409	462	4	ENST00000359013.4:c.470C>T	p.Thr157Ile	p.T157I	ENST00000359013	NM_001024847.2	157	aCt/aTt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187549443	187549443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	278	576	4	ENST00000441802.2:c.4675G>A	p.Ala1559Thr	p.A1559T	ENST00000441802	NM_005245.3	1559	Gcc/Acc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30680916	30680916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	333	762	4	ENST00000376406.3:c.803G>T	p.Arg268Met	p.R268M	ENST00000376406	NM_014641.2	268	aGg/aTg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32165126	32165126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	343	613	1	ENST00000375023.3:c.5002C>T	p.Arg1668Cys	p.R1668C	ENST00000375023	NM_004557.3	1668	Cgc/Tgc																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128845090	128845090	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1278	314	855	5	ENST00000249373.3:c.584T>C	p.Val195Ala	p.V195A	ENST00000249373	NM_005631.4	195	gTg/gCg																																												NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128753100	128753100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	458	477	2	ENST00000377970.2:c.1261G>C	p.Val421Leu	p.V421L	ENST00000377970	NM_002467.4	421	Gtc/Ctc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70361095	70361097	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0014756-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	11	198	0	ENST00000374080.3:c.6285_6287delACA	p.Gln2115del	p.Q2115del	ENST00000374080		2095	CAA/-																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	268	470	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	196	407	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	235	657	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2210451	2210451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	90	460	1	ENST00000398665.3:c.1058C>T	p.Ala353Val	p.A353V	ENST00000398665	NM_032482.2	353	gCg/gTg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81969884	81969884	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199840870		P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1431	317	962	1	ENST00000359376.3:c.2953G>A	p.Val985Ile	p.V985I	ENST00000359376	NM_002661.3	985	Gtc/Atc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41101179	41101179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	98	248	0	ENST00000373198.4:c.1177G>A	p.Val393Met	p.V393M	ENST00000373198	NM_133170.3	393	Gtg/Atg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175287	112175288	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	154	383	0	ENST00000257430.4:c.3999dup	p.Ser1334IlefsTer8	p.S1334Ifs*8	ENST00000257430	NM_000038.5	1332	-/A																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	87	283	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	123	448	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	382	586	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	223	422	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72400848	72400848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1624	89	886	0	ENST00000357731.5:c.323T>C	p.Val108Ala	p.V108A	ENST00000357731	NM_173808.2	108	gTa/gCa																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153245504	153245504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	118	512	1	ENST00000281708.4:c.1687A>G	p.Ile563Val	p.I563V	ENST00000281708	NM_033632.3	563	Atc/Gtc																																												NEWRECORD																																		
FGF19	0	MSKCC	GRCh37	11	69514200	69514200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1444	170	746	0	ENST00000294312.3:c.481C>A	p.Pro161Thr	p.P161T	ENST00000294312	NM_005117.2	161	Cca/Aca																																												NEWRECORD																																		
CRLF2	0	MSKCC	GRCh37	X	1321390	1321390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	574	533	1	ENST00000381566.1:c.365C>T	p.Pro122Leu	p.P122L	ENST00000381566		122	cCg/cTg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	531	519	2	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66937392	66937392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	174	365	0	ENST00000374690.3:c.2246C>A	p.Ala749Asp	p.A749D	ENST00000374690	NM_000044.3	749	gCc/gAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174694	112174695	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0004960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	165	610	0	ENST00000257430.4:c.3404_3405del	p.Tyr1135Ter	p.Y1135*	ENST00000257430	NM_000038.5	1135	TAt/t																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	125	463	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48581157	48581157	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	41	248	0	ENST00000342988.3:c.461C>G	p.Ser154Ter	p.S154*	ENST00000342988	NM_005359.5	154	tCa/tGa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0005163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	121	221	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821760	72821760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	193	556	3	ENST00000268489.5:c.10415C>T	p.Ala3472Val	p.A3472V	ENST00000268489	NM_006885.3	3472	gCg/gTg																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117864807	117864808	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCTGCTGT			P-0005163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	133	544	0	ENST00000297338.2:c.1293_1301dup	p.Gln431_Gln433dup	p.Q431_Q433dup	ENST00000297338	NM_006265.2	431	cat/caACAGCAGCAt																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114901017	114901018	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0005163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	141	640	0	ENST00000543371.1:c.629_630del	p.His210LeufsTer117	p.H210Lfs*117	ENST00000543371	NM_001198531.1	209	gaACac/gaac																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0010406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	223	686	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17131327	17131327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	218	656	0	ENST00000285071.4:c.125G>T	p.Gly42Val	p.G42V	ENST00000285071	NM_144997.5	42	gGt/gTt																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41219661	41219661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	367	588	2	ENST00000357654.3:c.5038A>G	p.Ile1680Val	p.I1680V	ENST00000357654	NM_007294.3	1680	Att/Gtt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175918	112175919	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGAATCAAATGAATCCAAGAGAAAGAGGCAG			P-0010406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	27	327	0	ENST00000257430.4:c.4641_4642insTCCAAGAGAAAGAGGCAGAAGAATCAAATGAA	p.Asn1548SerfsTer28	p.N1548Sfs*28	ENST00000257430	NM_000038.5	1543	aaa/aAAGAATCAAATGAATCCAAGAGAAAGAGGCAGaa																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000624-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1307	701	547	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139405171	139405171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000624-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			806	473	584	0	ENST00000277541.6:c.2674C>T	p.Arg892Cys	p.R892C	ENST00000277541	NM_017617.3	892	Cgc/Tgc																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65544703	65544703	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000624-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			369	578	537	2	ENST00000358664.4:c.223C>T	p.Arg75Ter	p.R75*	ENST00000358664	NM_002382.4	75	Cga/Tga																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0000624-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			777	327	346	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16255665	16255665	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	154	287	0	ENST00000375759.3:c.2930A>T	p.Asp977Val	p.D977V	ENST00000375759	NM_015001.2	977	gAt/gTt																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16261463	16261463	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	198	315	0	ENST00000375759.3:c.8728G>T	p.Glu2910Ter	p.E2910*	ENST00000375759	NM_015001.2	2910	Gag/Tag																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178096484	178096484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	239	333	0	ENST00000397062.3:c.847G>A	p.Asp283Asn	p.D283N	ENST00000397062	NM_006164.4	283	Gat/Aat																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12653503	12653503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1073	247	398	0	ENST00000251849.4:c.266G>C	p.Arg89Thr	p.R89T	ENST00000251849	NM_002880.3	89	aGg/aCg																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50455141	50455141	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	132	267	0	ENST00000331340.3:c.688A>T	p.Met230Leu	p.M230L	ENST00000331340	NM_006060.4	230	Atg/Ttg																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43615069	43615069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	332	349	0	ENST00000355710.3:c.2483G>C	p.Gly828Ala	p.G828A	ENST00000355710	NM_020975.4	828	gGc/gCc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43615190	43615190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	73	172	0	ENST00000355710.3:c.2604G>A	p.Met868Ile	p.M868I	ENST00000355710	NM_020975.4	868	atG/atA																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			58	503	378	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14042188	14042189	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			56	247	218	0	ENST00000311895.7:c.2739dup	p.Gly914ArgfsTer26	p.G914Rfs*26	ENST00000311895	NM_005236.2	912	gga/ggAa																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39584375	39584375	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002435-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	199	343	0	ENST00000262039.4:c.1040del	p.Gln347ArgfsTer14	p.Q347Rfs*14	ENST00000262039	NM_002647.2	347	cAg/cg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	103	717	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128046289	128046289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	89	601	2	ENST00000285398.2:c.974G>A	p.Arg325Gln	p.R325Q	ENST00000285398	NM_000122.1	325	cGa/cAa																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143191893	143191893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	39	621	1	ENST00000262992.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000262992	NM_001101669.1	180	Gaa/Aaa																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060823	38060823	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1575	88	1014	1	ENST00000250448.2:c.1166A>T	p.Lys389Ile	p.K389I	ENST00000250448	NM_004496.3	389	aAa/aTa																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140501219	140501220	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	94	448	0	ENST00000288602.6:c.852_853insA	p.Gln285ThrfsTer3	p.Q285Tfs*3	ENST00000288602	NM_004333.4	284	-/A																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44950066	44950066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	62	474	1	ENST00000377967.4:c.3835C>T	p.Arg1279Ter	p.R1279*	ENST00000377967	NM_021140.2	1279	Cga/Tga																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14015937	14015937	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187435008		P-0002245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			743	101	308	0	ENST00000311895.7:c.257G>A	p.Arg86His	p.R86H	ENST00000311895	NM_005236.2	86	cGc/cAc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002245-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	438	337	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	48	467	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0005642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	73	360	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67479784	67479784	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	68	469	0	ENST00000327367.4:c.1091A>C	p.Tyr364Ser	p.Y364S	ENST00000327367	NM_005902.3	364	tAc/tCc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971079	21971080	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0005642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	49	215	0	ENST00000304494.5:c.277_278dup	p.Leu94ArgfsTer53	p.L94Rfs*53	ENST00000304494	NM_000077.4	93	acg/acACg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971079	21971080	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0005642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	49	215	0	ENST00000304494.5:c.277_278dup	p.Leu94ArgfsTer53	p.L94Rfs*53	ENST00000304494	NM_000077.4	93	acg/acACg																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971079	21971080	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0005642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	49	215	0	ENST00000304494.5:c.277_278dup	p.Leu94ArgfsTer53	p.L94Rfs*53	ENST00000304494	NM_000077.4	93	acg/acACg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187584475	187584475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	65	457	0	ENST00000441802.2:c.3558C>A	p.Phe1186Leu	p.F1186L	ENST00000441802	NM_005245.3	1186	ttC/ttA																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162731205	162731205	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	68	523	0	ENST00000367921.3:c.1060G>C	p.Asp354His	p.D354H	ENST00000367921	NM_006182.2	354	Gat/Cat																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630240	187630240	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	44	352	0	ENST00000441802.2:c.742G>C	p.Glu248Gln	p.E248Q	ENST00000441802	NM_005245.3	248	Gaa/Caa																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94120614	94120614	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1334	96	865	0	ENST00000369303.4:c.437T>G	p.Ile146Arg	p.I146R	ENST00000369303	NM_004440.3	146	aTa/aGa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042709	42042709	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1256	297	1012	0	ENST00000219905.7:c.6904G>T	p.Glu2302Ter	p.E2302*	ENST00000219905	NM_001164273.1	2302	Gaa/Taa																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47038726	47038726	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	105	245	0	ENST00000329236.7:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000329236	NM_001204466.1	168	Cag/Tag																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410946	63410946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	96	357	0	ENST00000330258.3:c.2221C>T	p.Pro741Ser	p.P741S	ENST00000330258	NM_152424.3	741	Ccc/Tcc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576882	7576883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	132	537	0	ENST00000269305.4:c.963dup	p.Pro322ThrfsTer15	p.P322Tfs*15	ENST00000269305	NM_001126112.2	321	-/A																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	163	431	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	113	288	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	164	456	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	152	380	1	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	194	467	1	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151891590	151891590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	185	421	1	ENST00000262189.6:c.4442G>A	p.Arg1481Gln	p.R1481Q	ENST00000262189	NM_170606.2	1481	cGa/cAa																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244967	46244967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	248	572	0	ENST00000334344.6:c.3061C>A	p.Pro1021Thr	p.P1021T	ENST00000334344	NM_152641.2	1021	Ccc/Acc																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40497630	40497630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	307	703	1	ENST00000264657.5:c.319C>T	p.Arg107Trp	p.R107W	ENST00000264657	NM_139276.2	107	Cgg/Tgg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15296358	15296358	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202228716		P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	143	493	2	ENST00000263388.2:c.2084C>T	p.Pro695Leu	p.P695L	ENST00000263388	NM_000435.2	695	cCg/cTg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70344125	70344125	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	108	646	2	ENST00000374080.3:c.1861C>T	p.Arg621Ter	p.R621*	ENST00000374080		621	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175879	112175880	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	168	416	0	ENST00000257430.4:c.4592dup	p.Asn1531LysfsTer2	p.N1531Kfs*2	ENST00000257430	NM_000038.5	1530	gaa/gAaa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	106	169	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806599	1806599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			801	351	371	0	ENST00000260795.2:c.1315C>T	p.Arg439Cys	p.R439C	ENST00000260795		439	Cgc/Tgc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32945129	32945129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	147	323	0	ENST00000380152.3:c.8524C>T	p.Arg2842Cys	p.R2842C	ENST00000380152		2842	Cgc/Tgc																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103504572	103504572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			630	238	455	0	ENST00000355739.4:c.193C>T	p.Leu65Phe	p.L65F	ENST00000355739	NM_000123.3	65	Ctc/Ttc																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153249360	153249361	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	167	347	0	ENST00000281708.4:c.1417dupA	p.Arg473LysfsTer4	p.R473Kfs*4	ENST00000281708	NM_033632.3	473	aga/aAga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174459	112174459	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	149	259	0	ENST00000257430.4:c.3168del	p.Ile1056MetfsTer5	p.I1056Mfs*5	ENST00000257430	NM_000038.5	1056	atA/at																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175668	112175668	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	202	386	1	ENST00000257430.4:c.4377del	p.Ala1460LeufsTer13	p.A1460Lfs*13	ENST00000257430	NM_000038.5	1459	acT/ac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002200-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			564	40	651	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002200-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			560	41	586	0	ENST00000324856.7:c.1650dupC	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138478161	138478161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002200-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			406	27	611	0	ENST00000289153.2:c.25C>T	p.Pro9Ser	p.P9S	ENST00000289153	NM_006219.2	9	Cct/Tct																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188261	10188261	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	356	943	0	ENST00000256474.2:c.404T>A	p.Leu135Ter	p.L135*	ENST00000256474	NM_000551.3	135	tTa/tAa																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81334727	81334727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	341	1029	0	ENST00000222390.5:c.1989G>T	p.Lys663Asn	p.K663N	ENST00000222390	NM_000601.4	663	aaG/aaT																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43806072	43806072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	171	935	0	ENST00000372470.3:c.868C>A	p.Gln290Lys	p.Q290K	ENST00000372470	NM_005373.2	290	Caa/Aaa																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627531	37627531	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	261	842	0	ENST00000447079.4:c.1446del	p.Lys482AsnfsTer14	p.K482Nfs*14	ENST00000447079	NM_015083.1	482	aaG/aa																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52623170	52623170	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	335	820	2	ENST00000394830.3:c.2881G>T	p.Gly961Ter	p.G961*	ENST00000394830	NM_018313.4	961	Gga/Tga																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117687293	117687293	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	143	846	0	ENST00000368508.3:c.2758C>G	p.Pro920Ala	p.P920A	ENST00000368508	NM_002944.2	920	Cca/Gca																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47163662	47163663	+	frameshift_variant	Frame_Shift_Ins	INS	TT	TT	CTTGAA			P-0013638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	137	567	0	ENST00000409792.3:c.2463_2464delinsTTCAAG	p.Asn822SerfsTer3	p.N822Sfs*3	ENST00000409792	NM_014159.6	821	tcAAat/tcTTCAAGat																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720625	89720687	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCTTTTCTTTTTTTTTTTTTTTAGGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCA	TTTCTTTTCTTTTTTTTTTTTTTTAGGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCA	-			P-0003506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	53	107	0	ENST00000371953.3:c.802-25_839del		p.X268_splice	ENST00000371953	NM_000314.4	268																																													NEWRECORD																																		
VTCN1	0	MSKCC	GRCh37	1	117690296	117690297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	110	306	0	ENST00000369458.3:c.832dup	p.Tyr278LeufsTer34	p.Y278Lfs*34	ENST00000369458	NM_024626.3	278	tac/tTac																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	792	667	2	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	191	373	0	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16049724	16049724	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	469	857	0	ENST00000268712.3:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000268712	NM_006311.3	350	Cga/Tga																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164812	36164813	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	204	454	0	ENST00000300305.3:c.1062dup	p.Tyr355LeufsTer245	p.Y355Lfs*245	ENST00000300305		354	-/C																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120634	115120643	+	frameshift_variant	Frame_Shift_Del	DEL	GACCATCTCG	GACCATCTCG	-			P-0010201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	261	652	1	ENST00000257566.3:c.363_372del	p.Glu122LeufsTer14	p.E122Lfs*14	ENST00000257566	NM_016569.3	121	acCGAGATGGTC/ac																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68835728	68835729	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAC			P-0010201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	266	538	0	ENST00000261769.5:c.322_323insCACA	p.Arg108ThrfsTer61	p.R108Tfs*61	ENST00000261769	NM_004360.3	107	tac/tACACac																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10191480	10191480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	246	338	0	ENST00000256474.2:c.473T>C	p.Leu158Pro	p.L158P	ENST00000256474	NM_000551.3	158	cTg/cCg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52696240	52696240	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	441	595	0	ENST00000394830.3:c.437G>C	p.Arg146Pro	p.R146P	ENST00000394830	NM_018313.4	146	cGa/cCa																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93969104	93969104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1475	594	700	0	ENST00000369303.4:c.1892C>T	p.Ser631Phe	p.S631F	ENST00000369303	NM_004440.3	631	tCc/tTc																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121437292	121437292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	182	509	0	ENST00000257555.6:c.1630A>G	p.Thr544Ala	p.T544A	ENST00000257555		544	Acc/Gcc																																												NEWRECORD																																		
BCL2	0	MSKCC	GRCh37	18	60985587	60985587	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	53	184	1	ENST00000333681.4:c.313T>C	p.Ser105Pro	p.S105P	ENST00000333681		105	Tcc/Ccc																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46265492	46265492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1248	381	748	0	ENST00000371998.3:c.2362G>C	p.Glu788Gln	p.E788Q	ENST00000371998		788	Gag/Cag																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89725047	89725062	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCTGTACTTCACAA	AAGCTGTACTTCACAA	-			P-0005306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	179	394	0	ENST00000371953.3:c.1032_1047del	p.Leu345GlnfsTer2	p.L345Qfs*2	ENST00000371953	NM_000314.4	344	AAGCTGTACTTCACAAaa/aa																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52441188	52441188	+	splice_donor_variant	Splice_Site	DEL	A	A	-			P-0005306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	224	440	0	ENST00000460680.1:c.580+2del		p.X194_splice	ENST00000460680	NM_004656.3	194																																													NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89693005	89693005	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TT			P-0005306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	135	229	0	ENST00000371953.3:c.489delinsTT	p.Lys163AsnfsTer2	p.K163Nfs*2	ENST00000371953	NM_000314.4	163	aaA/aaTT																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118370604	118370605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	10	343	0	ENST00000534358.1:c.6135dup	p.Lys2046Ter	p.K2046*	ENST00000534358	NM_005933.3	2045	gat/gaTt																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061211	38061240	+	inframe_deletion	In_Frame_Del	DEL	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	-			P-0014249-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	47	623	0	ENST00000250448.2:c.749_778del	p.Ser250_Tyr259del	p.S250_Y259del	ENST00000250448	NM_004496.3	250	tCCGGCAACATGTTCGAGAACGGCTGCTACTtg/ttg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938218	76938219	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	25	610	0	ENST00000373344.5:c.2529dup	p.Thr844TyrfsTer5	p.T844Yfs*5	ENST00000373344	NM_000489.3	843	-/T																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	138	303	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	42	142	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16257143	16257143	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	154	449	0	ENST00000375759.3:c.4408C>T	p.Arg1470Ter	p.R1470*	ENST00000375759	NM_015001.2	1470	Cga/Tga																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662590	227662590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	65	192	0	ENST00000305123.5:c.865C>T	p.Leu289Phe	p.L289F	ENST00000305123	NM_005544.2	289	Ctc/Ttc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52637603	52637603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			910	241	601	0	ENST00000394830.3:c.2713G>C	p.Glu905Gln	p.E905Q	ENST00000394830	NM_018313.4	905	Gag/Cag																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508075	106508075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	58	132	1	ENST00000359195.3:c.69G>A	p.Met23Ile	p.M23I	ENST00000359195	NM_002649.2	23	atG/atA																																												NEWRECORD																																		
LMO1	0	MSKCC	GRCh37	11	8251950	8251950	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	136	392	2	ENST00000335790.3:c.127T>C	p.Tyr43His	p.Y43H	ENST00000335790	NM_002315.2	43	Tac/Cac																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29002012	29002012	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			584	116	283	1	ENST00000282397.4:c.1153A>G	p.Thr385Ala	p.T385A	ENST00000282397	NM_002019.4	385	Act/Gct																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37883987	37883987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	125	369	3	ENST00000269571.5:c.3458G>T	p.Arg1153Leu	p.R1153L	ENST00000269571		1153	cGa/cTa																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68845736	68845737	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGT			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	88	262	1	ENST00000261769.5:c.983_986dupTGGT	p.Thr330GlyfsTer21	p.T330Gfs*21	ENST00000261769	NM_004360.3	328	gtg/gTGGTtg																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419920	152419921	+	missense_variant	Missense_Mutation	DNP	TC	TC	AG			P-0000607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	86	247	0	ENST00000206249.3:c.1607_1608delTCinsAG	p.Leu536Gln	p.L536Q	ENST00000206249	NM_000125.3	536	cTC/cAG																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766350	66766351	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGT			P-0001211-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			33	28	89	3	ENST00000374690.3:c.1368_1370dupTGG	p.Gly473dup	p.G473dup	ENST00000374690	NM_000044.3	473	-/GGT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001211-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	108	589	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148544383	148544383	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001211-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	18	398	0	ENST00000320356.2:c.8A>T	p.Gln3Leu	p.Q3L	ENST00000320356	NM_004456.4	3	cAg/cTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578274	7578274	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001211-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	61	475	0	ENST00000269305.4:c.575A>T	p.Gln192Leu	p.Q192L	ENST00000269305	NM_001126112.2	192	cAg/cTg																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39726872	39726872	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001211-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	41	302	0	ENST00000361337.2:c.870G>C	p.Glu290Asp	p.E290D	ENST00000361337	NM_003286.2	290	gaG/gaC																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246603	46246603	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001211-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	48	165	0	ENST00000334344.6:c.4697del	p.Ala1566ValfsTer3	p.A1566Vfs*3	ENST00000334344	NM_152641.2	1566	gCt/gt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			809	103	289	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842748	68842748	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	42	360	0	ENST00000261769.5:c.684C>G	p.Tyr228Ter	p.Y228*	ENST00000261769	NM_004360.3	228	taC/taG																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178641	56178641	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	93	229	0	ENST00000399503.3:c.3615del	p.Pro1206LeufsTer39	p.P1206Lfs*39	ENST00000399503	NM_005921.1	1205	gTt/gt																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44942029	44942030	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014560-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	93	273	0	ENST00000377967.4:c.3284dup	p.Trp1096ValfsTer7	p.W1096Vfs*7	ENST00000377967	NM_021140.2	1093	-/A																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37667850	37667850	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002796-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	63	323	0	ENST00000447079.4:c.2735G>C	p.Arg912Pro	p.R912P	ENST00000447079	NM_015083.1	912	cGt/cCt																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31386450	31386450	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0002796-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	34	118	0	ENST00000328111.2:c.1674+1G>C		p.X558_splice	ENST00000328111	NM_006892.3	558																																													NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627417	37627418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002796-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	51	235	0	ENST00000447079.4:c.1337dup	p.Leu447ValfsTer15	p.L447Vfs*15	ENST00000447079	NM_015083.1	444	-/A																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	109	770	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	109	692	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	102	876	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56855485	56855485	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79070284		P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	141	585	0	ENST00000308159.5:c.634G>A	p.Val212Ile	p.V212I	ENST00000308159	NM_014669.4	212	Gtc/Atc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579354	7579355	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	190	1019	0	ENST00000269305.4:c.332_333del	p.Leu111ArgfsTer37	p.L111Rfs*37	ENST00000269305	NM_001126112.2	111	cTG/c																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2222183	2222183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	60	1070	2	ENST00000398665.3:c.3015G>T	p.Gln1005His	p.Q1005H	ENST00000398665	NM_032482.2	1005	caG/caT																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467526	66467526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	82	477	0	ENST00000273854.3:c.743C>T	p.Thr248Ile	p.T248I	ENST00000273854	NM_004439.5	248	aCt/aTt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175452	112175452	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014694-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	213	453	0	ENST00000257430.4:c.4161T>A	p.Cys1387Ter	p.C1387*	ENST00000257430	NM_000038.5	1387	tgT/tgA																																												NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	394	438	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143129637	143129637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	60	398	0	ENST00000262992.4:c.1013A>G	p.Glu338Gly	p.E338G	ENST00000262992	NM_001101669.1	338	gAa/gGa																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56477573	56477573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	154	547	1	ENST00000267101.3:c.121G>A	p.Asp41Asn	p.D41N	ENST00000267101	NM_001982.3	41	Gat/Aat																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988228	36988228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	13	131	0	ENST00000354822.5:c.425G>A	p.Gly142Glu	p.G142E	ENST00000354822	NM_001079668.2	142	gGa/gAa																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3807965	3807965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	211	393	0	ENST00000262367.5:c.3454C>G	p.Gln1152Glu	p.Q1152E	ENST00000262367	NM_004380.2	1152	Cag/Gag																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48573434	48573453	+	frameshift_variant	Frame_Shift_Del	DEL	TACGAATACACCAACAAGTA	TACGAATACACCAACAAGTA	-			P-0007072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	30	401	1	ENST00000342988.3:c.18_37del	p.Thr7Ter	p.T7*	ENST00000342988	NM_005359.5	6	atTACGAATACACCAACAAGTAat/atat																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	103	339	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	219	539	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101894916	101894916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	339	722	0	ENST00000374994.4:c.469C>T	p.Arg157Ter	p.R157*	ENST00000374994	NM_004612.2	157	Cga/Tga																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117622209	117622209	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	215	686	0	ENST00000368508.3:c.6661T>G	p.Phe2221Val	p.F2221V	ENST00000368508	NM_002944.2	2221	Ttt/Gtt																																												NEWRECORD																																		
BBC3	0	MSKCC	GRCh37	19	47731614	47731614	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	157	213	0	ENST00000449228.1:c.178C>T	p.Pro60Ser	p.P60S	ENST00000449228	NM_001127240.2	60	Ccc/Tcc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0007115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	258	585	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	419	408	0	ENST00000263967.3:c.3127A>T	p.Met1043Leu	p.M1043L	ENST00000263967	NM_006218.2	1043	Atg/Ttg																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110438153	110438153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	202	173	0	ENST00000375856.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000375856	NM_003749.2	83	cGg/cAg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	614	396	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174529	112174529	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	324	425	3	ENST00000257430.4:c.3238G>T	p.Glu1080Ter	p.E1080*	ENST00000257430	NM_000038.5	1080	Gag/Tag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0007115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	288	326	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33																																													NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	359	423	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717695	89717696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	218	335	0	ENST00000371953.3:c.723dupT	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	240	-/T																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	61	372	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186504432	186504432	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	94	519	0	ENST00000323963.5:c.769G>A	p.Glu257Lys	p.E257K	ENST00000323963		257	Gag/Aag																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37619180	37619180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	143	391	0	ENST00000447079.4:c.856C>G	p.Gln286Glu	p.Q286E	ENST00000447079	NM_015083.1	286	Cag/Gag																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117884	70117884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	36	214	0	ENST00000245479.2:c.352G>A	p.Ala118Thr	p.A118T	ENST00000245479	NM_000346.3	118	Gcg/Acg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120202	70120203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	120	340	0	ENST00000245479.2:c.1205dup	p.Ser403GlufsTer175	p.S403Efs*175	ENST00000245479	NM_000346.3	402	ctg/cTtg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	167	524	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577196	64577196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002958-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	100	568	2	ENST00000337652.1:c.386del	p.Leu129ProfsTer25	p.L129Pfs*25	ENST00000337652	NM_130803.2	129	cTc/cc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003187-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			349	83	333	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212566883	212566883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003187-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			324	34	270	0	ENST00000342788.4:c.1298C>T	p.Ser433Phe	p.S433F	ENST00000342788	NM_005235.2	433	tCc/tTc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49444055	49444055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003187-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			341	52	380	0	ENST00000301067.7:c.3316C>T	p.Pro1106Ser	p.P1106S	ENST00000301067	NM_003482.3	1106	Ccc/Tcc																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7126597	7126597	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0003187-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			625	52	608	0	ENST00000302850.5:c.3011A>G	p.Asp1004Gly	p.D1004G	ENST00000302850	NM_000208.2	1004	gAt/gGt																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43812190	43812191	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ATATGCAATTCTGTCAT			P-0003187-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			805	50	613	0	ENST00000372470.3:c.1055_1056insATATGCAATTCTGTCAT	p.Cys352Ter	p.C352*	ENST00000372470	NM_005373.2	352	tgc/tgATATGCAATTCTGTCATc																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002975-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			158	117	157	1	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002975-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			218	79	256	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64574690	64574690	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0002975-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			147	92	147	0	ENST00000337652.1:c.800del	p.Lys267SerfsTer19	p.K267Sfs*19	ENST00000337652	NM_130803.2	267	aAg/ag																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212812172	212812172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002975-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			359	35	213	0	ENST00000342788.4:c.404G>T	p.Gly135Val	p.G135V	ENST00000342788	NM_005235.2	135	gGa/gTa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	101	685	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	27	528	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0014224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	103	468	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			824	33	680	3	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	54	556	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89725042	89725042	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0014224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	65	212	0	ENST00000371953.3:c.1027-2A>T		p.X343_splice	ENST00000371953	NM_000314.4	343																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023151	27023179	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	-			P-0014224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			95	104	98	0	ENST00000324856.7:c.267_295del	p.Ser90ProfsTer11	p.S90Pfs*11	ENST00000324856	NM_006015.4	86	gGCGGAGCCGGCAGCGGCGGCGGGCCCGGC/g																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692929	89692929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	120	603	0	ENST00000371953.3:c.413A>G	p.Tyr138Cys	p.Y138C	ENST00000371953	NM_000314.4	138	tAt/tGt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105966	27105967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0014224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	95	428	0	ENST00000324856.7:c.5581_5582dup	p.Ser1861ArgfsTer23	p.S1861Rfs*23	ENST00000324856	NM_006015.4	1859	-/GA																																												NEWRECORD																																		
RRAS2	0	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014224-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	134	440	0	ENST00000256196.4:c.71G>A	p.Gly24Asp	p.G24D	ENST00000256196		24	gGc/gAc																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	62	139	0	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29462581	29462581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	57	190	1	ENST00000389048.3:c.2320C>A	p.Leu774Met	p.L774M	ENST00000389048	NM_004304.4	774	Ctg/Atg																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128047062	128047062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	43	194	0	ENST00000285398.2:c.673G>A	p.Glu225Lys	p.E225K	ENST00000285398	NM_000122.1	225	Gaa/Aaa																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662307	227662307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	39	158	0	ENST00000305123.5:c.1148C>G	p.Ser383Trp	p.S383W	ENST00000305123	NM_005544.2	383	tCg/tGg																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41267219	41267219	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	27	132	0	ENST00000349496.5:c.803G>C	p.Gly268Ala	p.G268A	ENST00000349496	NM_001904.3	268	gGa/gCa																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55602909	55602909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	43	122	0	ENST00000288135.5:c.2619G>T	p.Met873Ile	p.M873I	ENST00000288135	NM_000222.2	873	atG/atT																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55955933	55955933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	26	178	0	ENST00000263923.4:c.3229A>G	p.Ile1077Val	p.I1077V	ENST00000263923	NM_002253.2	1077	Att/Gtt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117677894	117677894	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	40	168	0	ENST00000368508.3:c.4039C>G	p.Leu1347Val	p.L1347V	ENST00000368508	NM_002944.2	1347	Cta/Gta																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157520015	157520015	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	90	229	1	ENST00000346085.5:c.4084C>T	p.Gln1362Ter	p.Q1362*	ENST00000346085	NM_020732.3	1362	Cag/Tag																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106523486	106523486	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	28	102	0	ENST00000359195.3:c.2638G>T	p.Glu880Ter	p.E880*	ENST00000359195	NM_002649.2	880	Gag/Tag																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70446161	70446161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	44	153	0	ENST00000373644.4:c.5101C>T	p.Gln1701Ter	p.Q1701*	ENST00000373644	NM_030625.2	1701	Caa/Taa																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100999114	100999114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	52	256	2	ENST00000325455.5:c.688G>A	p.Glu230Lys	p.E230K	ENST00000325455	NM_001202474.3	230	Gag/Aag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49446785	49446785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	38	184	0	ENST00000301067.7:c.1025A>G	p.Asn342Ser	p.N342S	ENST00000301067	NM_003482.3	342	aAc/aGc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115110047	115110047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	48	162	0	ENST00000257566.3:c.1831G>A	p.Ala611Thr	p.A611T	ENST00000257566	NM_016569.3	611	Gcg/Acg																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88472444	88472444	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	25	143	0	ENST00000360948.2:c.2111T>G	p.Val704Gly	p.V704G	ENST00000360948	NM_001012338.2	704	gTc/gGc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3786137	3786137	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	96	225	0	ENST00000262367.5:c.4628A>T	p.Asp1543Val	p.D1543V	ENST00000262367	NM_004380.2	1543	gAt/gTt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831986	72831986	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	58	310	0	ENST00000268489.5:c.4595A>G	p.Asn1532Ser	p.N1532S	ENST00000268489	NM_006885.3	1532	aAt/aGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	181	171	0	ENST00000269305.4:c.577C>G	p.His193Asp	p.H193D	ENST00000269305	NM_001126112.2	193	Cat/Gat																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17122406	17122406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	83	206	0	ENST00000285071.4:c.989C>T	p.Ser330Phe	p.S330F	ENST00000285071	NM_144997.5	330	tCc/tTc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42794509	42794509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	175	228	0	ENST00000575354.2:c.1589C>T	p.Ser530Phe	p.S530F	ENST00000575354	NM_015125.3	530	tCc/tTc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42796747	42796747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	68	125	0	ENST00000575354.2:c.3205C>T	p.Gln1069Ter	p.Q1069*	ENST00000575354	NM_015125.3	1069	Cag/Tag																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410355	63410355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	65	134	0	ENST00000330258.3:c.2812G>A	p.Gly938Arg	p.G938R	ENST00000330258	NM_152424.3	938	Gga/Aga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27102069	27102069	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	43	242	0	ENST00000324856.7:c.4996del	p.Thr1666ProfsTer7	p.T1666Pfs*7	ENST00000324856	NM_006015.4	1665	ggA/gg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49425135	49425136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	145	213	0	ENST00000301067.7:c.13352dup	p.Ala4452GlyfsTer35	p.A4452Gfs*35	ENST00000301067	NM_003482.3	4451	ctg/ctTg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139404311	139404315	+	missense_variant	Missense_Mutation	ONP	TCGTT	TCGTT	CCGTC			P-0006281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	73	197	0	ENST00000277541.6:c.2839_2843delinsGACGG	p.Asn947_Glu948delinsAspGly	p.N947_E948delinsDG	ENST00000277541	NM_017617.3	947	AACGAg/GACGGg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	48	488	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	53	617	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56168686	56168687	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	143	533	0	ENST00000399503.3:c.1543dup	p.Leu515ProfsTer26	p.L515Pfs*26	ENST00000399503	NM_005921.1	514	tcc/tCcc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56168803	56168804	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0014622-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	205	576	0	ENST00000399503.3:c.1658dup	p.Tyr553Ter	p.Y553*	ENST00000399503	NM_005921.1	553	tac/tAac																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	99	560	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0009186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	82	479	1	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81346637	81346637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	32	558	0	ENST00000222390.5:c.1316A>G	p.Tyr439Cys	p.Y439C	ENST00000222390	NM_000601.4	439	tAc/tGc																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101904835	101904835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	72	503	0	ENST00000374994.4:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000374994	NM_004612.2	275	Cag/Tag																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120512260	120512260	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	454	362	0	ENST00000256646.2:c.982A>T	p.Asn328Tyr	p.N328Y	ENST00000256646	NM_024408.3	328	Aac/Tac																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56168704	56168704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	665	472	0	ENST00000399503.3:c.1558C>T	p.Gln520Ter	p.Q520*	ENST00000399503	NM_005921.1	520	Cag/Tag																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67070595	67070595	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	585	540	0	ENST00000412916.2:c.219G>A	p.Trp73Ter	p.W73*	ENST00000412916		73	tgG/tgA																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGGACCC			P-0007984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	434	485	0	ENST00000346208.3:c.1000_1007dup	p.Val337GlyfsTer21	p.V337Gfs*21	ENST00000346208		333	-/GGGGACCC																																												NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	336	621	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																												NEWRECORD																																		
HIST1H3F	0	MSKCC	GRCh37	6	26250500	26250501	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACACAGGTTGGTGTCCTCAAAGAGCCCCACCAGGT			P-0006928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1684	209	1395	0	ENST00000446824.2:c.299_333dup	p.Ala112ThrfsTer19	p.A112Tfs*19	ENST00000446824	NM_021018.2	111	-/ACCTGGTGGGGCTCTTTGAGGACACCAACCTGTGT																																												NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	97	843	1	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	321	733	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	325	471	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	91	423	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9782063	9782063	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	194	718	0	ENST00000377346.4:c.2086A>G	p.Asn696Asp	p.N696D	ENST00000377346	NM_005026.3	696	Aat/Gat																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101231	27101231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	60	581	0	ENST00000324856.7:c.4513A>G	p.Thr1505Ala	p.T1505A	ENST00000324856	NM_006015.4	1505	Acc/Gcc																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	176145045	176145045	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	59	574	0	ENST00000367669.3:c.565+1G>A		p.X189_splice	ENST00000367669	NM_022457.5	189																																													NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16085728	16085728	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144939456		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	146	475	0	ENST00000281043.3:c.904C>T	p.Arg302Cys	p.R302C	ENST00000281043	NM_005378.4	302	Cgt/Tgt																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149551	202149551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139337151		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	75	563	0	ENST00000358485.4:c.992C>T	p.Thr331Met	p.T331M	ENST00000358485	NM_001080125.1	331	aCg/aTg																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37061895	37061895	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	319	447	1	ENST00000231790.2:c.979C>T	p.Gln327Ter	p.Q327*	ENST00000231790	NM_000249.3	327	Cag/Tag																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	65	606	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808581	1808581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	50	619	0	ENST00000260795.2:c.2194C>T	p.His732Tyr	p.H732Y	ENST00000260795		732	Cat/Tat																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187549334	187549334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	88	607	1	ENST00000441802.2:c.4784C>A	p.Ala1595Asp	p.A1595D	ENST00000441802	NM_005245.3	1595	gCt/gAt																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149503915	149503915	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201183721		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	49	440	0	ENST00000261799.4:c.1921C>T	p.Arg641Cys	p.R641C	ENST00000261799	NM_002609.3	641	Cgc/Tgc																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176518690	176518690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	78	304	0	ENST00000292408.4:c.608G>A	p.Arg203His	p.R203H	ENST00000292408	NM_213647.1	203	cGc/cAc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32170027	32170027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	89	740	0	ENST00000375023.3:c.3581C>T	p.Pro1194Leu	p.P1194L	ENST00000375023	NM_004557.3	1194	cCg/cTg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32191633	32191633	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	276	1180	0	ENST00000375023.3:c.73G>T	p.Gly25Trp	p.G25W	ENST00000375023	NM_004557.3	25	Ggg/Tgg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117686336	117686336	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	145	356	0	ENST00000368508.3:c.3005T>C	p.Val1002Ala	p.V1002A	ENST00000368508	NM_002944.2	1002	gTa/gCa																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157469898	157469898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	152	516	0	ENST00000346085.5:c.2692C>T	p.Arg898Ter	p.R898*	ENST00000346085	NM_020732.3	898	Cga/Tga																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116380038	116380038	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	102	807	0	ENST00000397752.3:c.1427A>G	p.His476Arg	p.H476R	ENST00000397752	NM_000245.2	476	cAt/cGt																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140624407	140624407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	33	89	0	ENST00000288602.6:c.97G>A	p.Ala33Thr	p.A33T	ENST00000288602	NM_004333.4	33	Gcc/Acc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8486320	8486320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	45	258	0	ENST00000356435.5:c.2497C>A	p.His833Asn	p.H833N	ENST00000356435		833	Cac/Aac																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49428261	49428261	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	63	493	0	ENST00000301067.7:c.10441-2A>G		p.X3481_splice	ENST00000301067	NM_003482.3	3481																																													NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121438877	121438877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	70	535	1	ENST00000257555.6:c.1778G>A	p.Ser593Asn	p.S593N	ENST00000257555		593	aGc/aAc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133219196	133219196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	65	499	0	ENST00000320574.5:c.4848G>T	p.Lys1616Asn	p.K1616N	ENST00000320574	NM_006231.2	1616	aaG/aaT																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32929312	32929312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	34	590	2	ENST00000380152.3:c.7322G>A	p.Gly2441Asp	p.G2441D	ENST00000380152		2441	gGc/gAc																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91358450	91358450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	74	776	0	ENST00000355112.3:c.4195A>G	p.Met1399Val	p.M1399V	ENST00000355112	NM_000057.2	1399	Atg/Gtg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3820866	3820866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	71	298	0	ENST00000262367.5:c.2585C>T	p.Thr862Met	p.T862M	ENST00000262367	NM_004380.2	862	aCg/aTg																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17129612	17129612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	226	719	1	ENST00000285071.4:c.274C>T	p.His92Tyr	p.H92Y	ENST00000285071	NM_144997.5	92	Cac/Tac																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39600632	39600632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	82	962	2	ENST00000262039.4:c.1447G>T	p.Ala483Ser	p.A483S	ENST00000262039	NM_002647.2	483	Gcc/Tcc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48584558	48584558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	40	503	0	ENST00000342988.3:c.731C>A	p.Pro244His	p.P244H	ENST00000342988	NM_005359.5	244	cCt/cAt																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5212456	5212456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	123	540	0	ENST00000357368.4:c.4661C>T	p.Ala1554Val	p.A1554V	ENST00000357368	NM_002850.3	1554	gCg/gTg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15291061	15291061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	184	557	0	ENST00000263388.2:c.3149G>A	p.Arg1050Gln	p.R1050Q	ENST00000263388	NM_000435.2	1050	cGg/cAg																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921451	39921451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	34	805	0	ENST00000378444.4:c.4369A>G	p.Ile1457Val	p.I1457V	ENST00000378444	NM_001123385.1	1457	Att/Gtt																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53224207	53224207	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202160290		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	182	771	0	ENST00000375401.3:c.3344G>A	p.Arg1115His	p.R1115H	ENST00000375401	NM_004187.3	1115	cGc/cAc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76888785	76888785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	115	1205	0	ENST00000373344.5:c.5044G>T	p.Gly1682Cys	p.G1682C	ENST00000373344	NM_000489.3	1682	Ggc/Tgc																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100608923	100608923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	152	900	0	ENST00000308731.7:c.1685G>A	p.Arg562Gln	p.R562Q	ENST00000308731	NM_000061.2	562	cGg/cAg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	119	485	0	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	55	602	1	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149793	202149794	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	71	646	1	ENST00000358485.4:c.1235_1236del	p.Lys412SerfsTer11	p.K412Sfs*11	ENST00000358485	NM_001080125.1	412	AAa/a																																												NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			112	74	276	3	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																												NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	242	419	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	92	879	5	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539266	187539266	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	71	667	0	ENST00000441802.2:c.8474delG	p.Gly2825GlufsTer4	p.G2825Efs*4	ENST00000441802	NM_005245.3	2825	gGa/ga																																												NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	37	230	3	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88649922	88649922	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	140	451	0	ENST00000372037.3:c.176del	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	57	ccT/cc																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577222	64577224	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	209	648	0	ENST00000337652.1:c.358_360del	p.Lys120del	p.K120del	ENST00000337652	NM_130803.2	120	AAG/-																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16029457	16029457	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	88	1110	1	ENST00000268712.3:c.1573del	p.Thr525GlnfsTer30	p.T525Qfs*30	ENST00000268712	NM_006311.3	525	Aca/ca																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76918921	76918921	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000862-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	108	1522	4	ENST00000373344.5:c.4070del	p.Lys1357ArgfsTer18	p.K1357Rfs*18	ENST00000373344	NM_000489.3	1357	aAg/ag																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0003282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	287	243	1	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225379455	225379455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	199	243	0	ENST00000264414.4:c.413A>G	p.Asn138Ser	p.N138S	ENST00000264414	NM_003590.4	138	aAc/aGc																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153250922	153250922	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	199	262	0	ENST00000281708.4:c.1138G>C	p.Asp380His	p.D380H	ENST00000281708	NM_033632.3	380	Gat/Cat																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3929856	3929856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	396	262	0	ENST00000262367.5:c.62G>A	p.Gly21Asp	p.G21D	ENST00000262367	NM_004380.2	21	gGt/gAt																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89836321	89836348	+	frameshift_variant	Frame_Shift_Del	DEL	CACCAGGTGCAGGAGGACCCACATCCAC	CACCAGGTGCAGGAGGACCCACATCCAC	-			P-0003282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	156	269	0	ENST00000389301.3:c.2401_2428del	p.Val801LeufsTer13	p.V801Lfs*13	ENST00000389301	NM_000135.2	801	GTGGATGTGGGTCCTCCTGCACCTGGTGct/ct																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	58	251	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	375	501	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	167	400	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50444333	50444333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	48	370	0	ENST00000331340.3:c.263C>T	p.Ser88Leu	p.S88L	ENST00000331340	NM_006060.4	88	tCg/tTg																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54963225	54963225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	39	458	0	ENST00000312783.6:c.29C>T	p.Ser10Leu	p.S10L	ENST00000312783	NM_198436.1	10	tCa/tTa																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153247165	153247165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	30	271	0	ENST00000281708.4:c.1637C>T	p.Ser546Leu	p.S546L	ENST00000281708	NM_033632.3	546	tCa/tTa																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8074274	8074274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	150	874	0	ENST00000377482.5:c.385C>T	p.Pro129Ser	p.P129S	ENST00000377482	NM_018948.3	129	Cca/Tca																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156836765	156836765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	63	357	0	ENST00000524377.1:c.423G>T	p.Gln141His	p.Q141H	ENST00000524377	NM_002529.3	141	caG/caT																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225343045	225343045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	126	464	0	ENST00000264414.4:c.2047G>A	p.Glu683Lys	p.E683K	ENST00000264414	NM_003590.4	683	Gaa/Aaa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176562130	176562130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	133	359	0	ENST00000439151.2:c.26G>A	p.Arg9Lys	p.R9K	ENST00000439151	NM_022455.4	9	aGa/aAa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108154982	108154982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	29	245	0	ENST00000278616.4:c.3775C>G	p.Leu1259Val	p.L1259V	ENST00000278616	NM_000051.3	1259	Ctg/Gtg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49433653	49433653	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	234	524	0	ENST00000301067.7:c.7900C>T	p.Gln2634Ter	p.Q2634*	ENST00000301067	NM_003482.3	2634	Cag/Tag																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133263898	133263898	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	52	198	0	ENST00000320574.5:c.4T>C	p.Ser2Pro	p.S2P	ENST00000320574	NM_006231.2	2	Tct/Cct																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81610554	81610554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	25	472	0	ENST00000298171.2:c.2152G>A	p.Asp718Asn	p.D718N	ENST00000298171	NM_000369.2	718	Gat/Aat																																												NEWRECORD																																		
GPS2	0	MSKCC	GRCh37	17	7216986	7216986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	373	699	1	ENST00000380728.2:c.535C>T	p.Gln179Ter	p.Q179*	ENST00000380728		179	Caa/Taa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15942749	15942749	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	42	493	0	ENST00000268712.3:c.6953C>G	p.Ser2318Ter	p.S2318*	ENST00000268712	NM_006311.3	2318	tCa/tGa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44923049	44923050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	63	195	0	ENST00000377967.4:c.1911dup	p.Asn638Ter	p.N638*	ENST00000377967	NM_021140.2	637	tct/tcTt																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178097198	178097199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	154	390	0	ENST00000397062.3:c.514_515dup	p.Ala173Ter	p.A173*	ENST00000397062	NM_006164.4	172	gta/gtGTa																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70361163	70361164	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAA			P-0005490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	40	267	0	ENST00000374080.3:c.6353_6354insACA	p.Gln2123dup	p.Q2123dup	ENST00000374080		2123	-/CAA																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	263	340	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	375	482	1	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt																																												NEWRECORD																																		
HIST1H3D	0	MSKCC	GRCh37	6	26197478	26197478	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1334	172	663	0	ENST00000356476.2:c.1A>G	p.Met1?	p.M1?	ENST00000356476		1	Atg/Gtg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32172151	32172151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	369	413	0	ENST00000375023.3:c.2881G>A	p.Asp961Asn	p.D961N	ENST00000375023	NM_004557.3	961	Gat/Aat																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117663588	117663588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	69	277	0	ENST00000368508.3:c.4644G>T	p.Glu1548Asp	p.E1548D	ENST00000368508	NM_002944.2	1548	gaG/gaT																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56492755	56492755	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	402	456	0	ENST00000407977.2:c.184A>G	p.Asn62Asp	p.N62D	ENST00000407977		62	Aat/Gat																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	363	334	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114710637	114710638	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	701	757	0	ENST00000543371.1:c.123dup	p.Ala42SerfsTer2	p.A42Sfs*2	ENST00000543371	NM_001198531.1	41	tta/ttAa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	104	328	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	63	551	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115746	8115746	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	106	683	0	ENST00000346208.3:c.1092A>T	p.Arg364Ser	p.R364S	ENST00000346208		364	agA/agT																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91306287	91306287	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	55	424	0	ENST00000355112.3:c.1974T>G	p.Ile658Met	p.I658M	ENST00000355112	NM_000057.2	658	atT/atG																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178492	56178493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGTCTCCTG			P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	108	371	0	ENST00000399503.3:c.3466_3475dup	p.Glu1159AlafsTer4	p.E1159Afs*4	ENST00000399503	NM_005921.1	1155	-/CTGTCTCCTG																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56180551	56180555	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAT	GAGAT	-			P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	38	292	0	ENST00000399503.3:c.3880_3884delGAGAT	p.Glu1294LysfsTer13	p.E1294Kfs*13	ENST00000399503	NM_005921.1	1294	GAGATa/a																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061268	38061269	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTTGCCCGG			P-0010453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	80	615	0	ENST00000250448.2:c.712_720dup	p.Pro238_Lys240dup	p.P238_K240dup	ENST00000250448	NM_004496.3	238	-/CCGGGCAAG																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	21	298	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578476	7578477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGGT			P-0007414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	24	314	0	ENST00000269305.4:c.450_453dup	p.Pro152ThrfsTer30	p.P152Tfs*30	ENST00000269305	NM_001126112.2	151	-/ACCC																																												NEWRECORD																																		
RAD51B	0	MSKCC	GRCh37	14	68331719	68331719	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001118-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	12	164	0	ENST00000487270.1:c.316-1G>T		p.X106_splice	ENST00000487270	NM_133509.3	106																																													NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115971	8115972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGTG			P-0001118-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	234	164	0	ENST00000346208.3:c.1318_1319insGTGA	p.Thr440SerfsTer68	p.T440Sfs*68	ENST00000346208		439	-/AGTG																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	84	423	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0007333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	65	480	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	35	390	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	35	390	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001317-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			853	47	502	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593532	48593532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001317-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			623	37	286	0	ENST00000342988.3:c.1283A>C	p.Lys428Thr	p.K428T	ENST00000342988	NM_005359.5	428	aAg/aCg																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56437564	56437565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0001317-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	57	348	0	ENST00000407977.2:c.896_897dupTG	p.Asp300TrpfsTer120	p.D300Wfs*120	ENST00000407977		299	-/TG																																												NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81335040	81335040	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751819844		P-0003363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	83	228	0	ENST00000222390.5:c.1787C>T	p.Thr596Met	p.T596M	ENST00000222390	NM_000601.4	596	aCg/aTg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108206593	108206593	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	92	243	0	ENST00000278616.4:c.8173G>C	p.Asp2725His	p.D2725H	ENST00000278616	NM_000051.3	2725	Gat/Cat																																												NEWRECORD																																		
TRAF2	0	MSKCC	GRCh37	9	139793211	139793212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	176	409	1	ENST00000247668.2:c.26dup	p.Gly10TrpfsTer70	p.G10Wfs*70	ENST00000247668	NM_021138.3	7	acc/aCcc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16262026	16262026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	112	170	0	ENST00000375759.3:c.9291G>T	p.Glu3097Asp	p.E3097D	ENST00000375759	NM_015001.2	3097	gaG/gaT																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165515	47165515	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	303	334	0	ENST00000409792.3:c.611C>G	p.Ser204Ter	p.S204*	ENST00000409792	NM_014159.6	204	tCa/tGa																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55565874	55565874	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	224	301	1	ENST00000288135.5:c.698G>C	p.Cys233Ser	p.C233S	ENST00000288135	NM_000222.2	233	tGc/tCc																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57755637	57755637	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	228	304	0	ENST00000274289.3:c.150A>C	p.Gln50His	p.Q50H	ENST00000274289	NM_006622.3	50	caA/caC																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151846084	151846084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			537	56	286	0	ENST00000262189.6:c.12928C>T	p.Pro4310Ser	p.P4310S	ENST00000262189	NM_170606.2	4310	Cct/Tct																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692829	89692829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			93	44	77	0	ENST00000371953.3:c.313T>A	p.Cys105Ser	p.C105S	ENST00000371953	NM_000314.4	105	Tgt/Agt																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741886	17741886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			39	27	33	0	ENST00000250003.3:c.557C>A	p.Pro186Gln	p.P186Q	ENST00000250003	NM_002478.4	186	cCg/cAg																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435528	18435528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	148	293	0	ENST00000266497.5:c.513T>G	p.Phe171Leu	p.F171L	ENST00000266497		171	ttT/ttG																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48881438	48881438	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	178	213	0	ENST00000267163.4:c.160G>T	p.Glu54Ter	p.E54*	ENST00000267163	NM_000321.2	54	Gaa/Taa																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3823858	3823858	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			492	309	323	0	ENST00000262367.5:c.2357A>C	p.Gln786Pro	p.Q786P	ENST00000262367	NM_004380.2	786	cAg/cCg																																												NEWRECORD																																		
SOCS1	0	MSKCC	GRCh37	16	11348804	11348804	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	64	83	0	ENST00000332029.2:c.532T>C	p.Cys178Arg	p.C178R	ENST00000332029	NM_003745.1	178	Tgc/Cgc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29490246	29490246	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	240	296	0	ENST00000358273.4:c.331A>T	p.Lys111Ter	p.K111*	ENST00000358273	NM_001042492.2	111	Aaa/Taa																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	739767	739767	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			798	94	420	0	ENST00000314574.4:c.1105A>T	p.Lys369Ter	p.K369*	ENST00000314574	NM_005433.3	369	Aag/Tag																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76855003	76855003	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			147	309	233	0	ENST00000373344.5:c.5833G>C	p.Gly1945Arg	p.G1945R	ENST00000373344	NM_000489.3	1945	Gga/Cga																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593591	55593596	+	inframe_deletion	In_Frame_Del	DEL	TATGAA	TATGAA	-			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	270	355	0	ENST00000288135.5:c.1657_1662del	p.Tyr553_Glu554del	p.Y553_E554del	ENST00000288135	NM_000222.2	553	TATGAA/-																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574009	7574010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	593	386	1	ENST00000269305.4:c.1017dup	p.Met340AspfsTer7	p.M340Dfs*7	ENST00000269305	NM_001126112.2	339	-/G																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156849152	156849152	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1396	192	596	0	ENST00000524377.1:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000524377	NM_002529.3	682	Cgt/Tgt																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100999087	100999087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	212	617	0	ENST00000325455.5:c.715G>A	p.Gly239Ser	p.G239S	ENST00000325455	NM_001202474.3	239	Ggc/Agc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	332	437	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	545	651	23	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25505568	25505568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	246	554	1	ENST00000264709.3:c.190G>A	p.Asp64Asn	p.D64N	ENST00000264709	NM_175629.2	64	Gac/Aac																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134967304	134967304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	202	498	1	ENST00000398015.3:c.2643G>A	p.Met881Ile	p.M881I	ENST00000398015	NM_004441.4	881	atG/atA																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189526294	189526295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCAA			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	122	317	0	ENST00000264731.3:c.560_564dup	p.Ser189ProfsTer12	p.S189Pfs*12	ENST00000264731	NM_003722.4	186	-/GCCAA																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372248	55372248	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	44	258	0	ENST00000297316.4:c.938T>C	p.Met313Thr	p.M313T	ENST00000297316	NM_022454.3	313	aTg/aCg																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	169	214	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	169	214	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	169	214	1	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39933145	39933146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	275	678	0	ENST00000378444.4:c.1453_1454insC	p.Glu485AlafsTer14	p.E485Afs*14	ENST00000378444	NM_001123385.1	485	gaa/gCaa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	108	1004	1	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	141	396	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45868194	45868194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	32	588	2	ENST00000391945.4:c.496C>T	p.Arg166Cys	p.R166C	ENST00000391945	NM_000400.3	166	Cgt/Tgt																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48018076	48018076	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	59	528	0	ENST00000234420.5:c.271T>G	p.Ser91Ala	p.S91A	ENST00000234420	NM_000179.2	91	Tca/Gca																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212522509	212522509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	23	465	2	ENST00000342788.4:c.1916C>T	p.Thr639Met	p.T639M	ENST00000342788	NM_005235.2	639	aCg/aTg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178922363	178922363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	57	548	0	ENST00000263967.3:c.1132T>C	p.Cys378Arg	p.C378R	ENST00000263967	NM_006218.2	378	Tgt/Cgt																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185191223	185191223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	44	287	0	ENST00000265026.3:c.2104G>A	p.Ala702Thr	p.A702T	ENST00000265026	NM_004721.4	702	Gcc/Acc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55561915	55561915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	29	454	0	ENST00000288135.5:c.305G>A	p.Gly102Asp	p.G102D	ENST00000288135	NM_000222.2	102	gGc/gAc																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149503887	149503887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	94	566	2	ENST00000261799.4:c.1949C>T	p.Ser650Leu	p.S650L	ENST00000261799	NM_002609.3	650	tCg/tTg																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2979559	2979559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	65	449	0	ENST00000396946.4:c.688G>A	p.Asp230Asn	p.D230N	ENST00000396946	NM_032415.4	230	Gat/Aat																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116340003	116340003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	10	382	1	ENST00000397752.3:c.865C>T	p.His289Tyr	p.H289Y	ENST00000397752	NM_000245.2	289	Cat/Tat																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64132906	64132906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	44	824	0	ENST00000334205.4:c.1040G>A	p.Ser347Asn	p.S347N	ENST00000334205	NM_003942.2	347	aGc/aAc																																												NEWRECORD																																		
EED	0	MSKCC	GRCh37	11	85988155	85988155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	65	632	0	ENST00000263360.6:c.1100G>T	p.Arg367Met	p.R367M	ENST00000263360	NM_003797.3	367	aGg/aTg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5215356	5215356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	146	675	0	ENST00000357368.4:c.4262G>A	p.Arg1421His	p.R1421H	ENST00000357368	NM_002850.3	1421	cGc/cAc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15285054	15285054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	25	311	0	ENST00000263388.2:c.4561C>T	p.Pro1521Ser	p.P1521S	ENST00000263388	NM_000435.2	1521	Cca/Tca																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692796	89692820	+	frameshift_variant	Frame_Shift_Del	DEL	AACCCACCACAGCTAGAACTTATCA	AACCCACCACAGCTAGAACTTATCA	-			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	28	289	0	ENST00000371953.3:c.285_309del	p.Pro96PhefsTer9	p.P96Ffs*9	ENST00000371953	NM_000314.4	94	AACCCACCACAGCTAGAACTTATCAaa/aa																																												NEWRECORD																																		
MYCL1	0	MSKCC	GRCh37	1	40366654	40366667	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTTCGCCCAGCG	GGGTTCGCCCAGCG	-			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	102	390	1	ENST00000397332.2:c.530_543del	p.Pro177GlnfsTer17	p.P177Qfs*17	ENST00000397332	NM_001033082.2	177	cCGCTGGGCGAACCC/c																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42791282	42791282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	24	459	0	ENST00000575354.2:c.346del	p.Val116TrpfsTer89	p.V116Wfs*89	ENST00000575354	NM_015125.3	114	ttG/tt																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67645943	67645944	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	34	534	0	ENST00000264010.4:c.875_876del	p.Arg292ThrfsTer22	p.R292Tfs*22	ENST00000264010	NM_006565.3	291	GAg/g																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73342925	73342925	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	47	438	0	ENST00000377767.4:c.1881delA	p.Ala629LeufsTer2	p.A629Lfs*2	ENST00000377767	NM_014953.3	627	aaA/aa																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225368387	225368388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	11	425	0	ENST00000264414.4:c.1358dupA	p.Asn453LysfsTer5	p.N453Kfs*5	ENST00000264414	NM_003590.4	453	aac/aaAc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2210766	2210766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	48	574	0	ENST00000398665.3:c.1266del	p.Glu423SerfsTer66	p.E423Sfs*66	ENST00000398665	NM_032482.2	421	aaC/aa																																												NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	74	666	3	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	93	300	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	159	485	5	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	25	410	1	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	94	435	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	104	658	0	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga																																												NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	81	427	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																												NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	88	306	0	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																												NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	110	457	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11123688	11123688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	43	615	0	ENST00000344626.4:c.2338G>A	p.Glu780Lys	p.E780K	ENST00000344626	NM_003072.3	780	Gag/Aag																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16260214	16260214	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	10	201	0	ENST00000375759.3:c.7484delC	p.Pro2495LeufsTer4	p.P2495Lfs*4	ENST00000375759	NM_015001.2	2493	agC/ag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	43	461	0	ENST00000269305.4:c.470T>C	p.Val157Ala	p.V157A	ENST00000269305	NM_001126112.2	157	gTc/gCc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49440135	49440136	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	28	486	1	ENST00000301067.7:c.4490_4491del	p.His1497LeufsTer30	p.H1497Lfs*30	ENST00000301067	NM_003482.3	1497	cAC/c																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133202283	133202283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	172	635	0	ENST00000320574.5:c.6605C>T	p.Thr2202Met	p.T2202M	ENST00000320574	NM_006231.2	2202	aCg/aTg																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36987087	36987087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	71	308	1	ENST00000354822.5:c.602C>T	p.Ala201Val	p.A201V	ENST00000354822	NM_001079668.2	201	gCg/gTg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11270924	11270924	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	66	475	1	ENST00000361445.4:c.3601C>T	p.Arg1201Ter	p.R1201*	ENST00000361445	NM_004958.3	1201	Cga/Tga																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11288900	11288900	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	89	488	0	ENST00000361445.4:c.2855T>C	p.Met952Thr	p.M952T	ENST00000361445	NM_004958.3	952	aTg/aCg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023768	27023769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	109	627	0	ENST00000324856.7:c.879dup	p.Thr294HisfsTer106	p.T294Hfs*106	ENST00000324856	NM_006015.4	292	acc/aCcc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023913	27023913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	110	148	1	ENST00000324856.7:c.1019C>T	p.Ala340Val	p.A340V	ENST00000324856	NM_006015.4	340	gCg/gTg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101278	27101278	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	131	560	0	ENST00000324856.7:c.4563del	p.Ala1522ProfsTer5	p.A1522Pfs*5	ENST00000324856	NM_006015.4	1520	ggC/gg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106887	27106887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	96	446	0	ENST00000324856.7:c.6498G>T	p.Met2166Ile	p.M2166I	ENST00000324856	NM_006015.4	2166	atG/atT																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458326	120458326	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	84	386	0	ENST00000256646.2:c.7019A>G	p.Tyr2340Cys	p.Y2340C	ENST00000256646	NM_024408.3	2340	tAc/tGc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120462945	120462945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	144	572	0	ENST00000256646.2:c.5386G>T	p.Ala1796Ser	p.A1796S	ENST00000256646	NM_024408.3	1796	Gct/Tct																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63759977	63759977	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	114	413	0	ENST00000279873.7:c.635del	p.Gly212AlafsTer24	p.G212Afs*24	ENST00000279873	NM_032199.2	210	ctG/ct																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64137021	64137021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	181	399	2	ENST00000334205.4:c.1532G>A	p.Arg511His	p.R511H	ENST00000334205	NM_003942.2	511	cGc/cAc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118343355	118343355	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	11	390	0	ENST00000534358.1:c.1481A>T	p.Glu494Val	p.E494V	ENST00000534358	NM_005933.3	494	gAg/gTg																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4409035	4409035	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	91	514	0	ENST00000261254.3:c.730A>G	p.Lys244Glu	p.K244E	ENST00000261254	NM_001759.3	244	Aaa/Gaa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420593	49420598	+	inframe_deletion	In_Frame_Del	DEL	CAGGTT	CAGGTT	-			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	82	474	0	ENST00000301067.7:c.15151_15156del	p.Asn5051_Leu5052del	p.N5051_L5052del	ENST00000301067	NM_003482.3	5051	AACCTG/-																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49443830	49443830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	240	645	0	ENST00000301067.7:c.3541C>T	p.Pro1181Ser	p.P1181S	ENST00000301067	NM_003482.3	1181	Cca/Tca																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49447881	49447881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201796530		P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	146	337	2	ENST00000301067.7:c.553C>T	p.Arg185Cys	p.R185C	ENST00000301067	NM_003482.3	185	Cgc/Tgc																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988303	36988303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	62	196	0	ENST00000354822.5:c.350G>A	p.Cys117Tyr	p.C117Y	ENST00000354822	NM_001079668.2	117	tGc/tAc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41961895	41961896	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	58	1008	1	ENST00000219905.7:c.808_809del	p.Asp270TrpfsTer8	p.D270Wfs*8	ENST00000219905	NM_001164273.1	268	cAG/c																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	137	625	0	ENST00000262367.5:c.3250dupA	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56440931	56440931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	185	581	0	ENST00000407977.2:c.406G>A	p.Ala136Thr	p.A136T	ENST00000407977		136	Gct/Act																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15276768	15276768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	184	613	0	ENST00000263388.2:c.5497G>A	p.Ala1833Thr	p.A1833T	ENST00000263388	NM_000435.2	1833	Gca/Aca																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50902194	50902194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	246	994	0	ENST00000440232.2:c.86C>A	p.Pro29His	p.P29H	ENST00000440232	NM_002691.3	29	cCt/cAt																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149769	202149769	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	18	570	0	ENST00000358485.4:c.1210T>C	p.Cys404Arg	p.C404R	ENST00000358485	NM_001080125.1	404	Tgc/Cgc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252959	36252959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	70	428	0	ENST00000300305.3:c.403G>A	p.Gly135Ser	p.G135S	ENST00000300305		135	Ggc/Agc																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30057288	30057288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	31	499	0	ENST00000338641.4:c.770C>T	p.Pro257Leu	p.P257L	ENST00000338641	NM_000268.3	257	cCg/cTg																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41275291	41275291	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750554859		P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	21	358	1	ENST00000349496.5:c.1457G>A	p.Arg486His	p.R486H	ENST00000349496	NM_001904.3	486	cGc/cAc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52685804	52685804	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	21	557	0	ENST00000394830.3:c.668T>C	p.Ile223Thr	p.I223T	ENST00000394830	NM_018313.4	223	aTa/aCa																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134920454	134920454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	96	739	1	ENST00000398015.3:c.2269G>C	p.Val757Leu	p.V757L	ENST00000398015	NM_004441.4	757	Gtg/Ctg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187538941	187538941	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	92	626	0	ENST00000441802.2:c.8799delA	p.Gly2934ValfsTer3	p.G2934Vfs*3	ENST00000441802	NM_005245.3	2933	caA/ca																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	251519	251519	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	123	245	0	ENST00000264932.6:c.1730A>G	p.Gln577Arg	p.Q577R	ENST00000264932	NM_004168.2	577	cAg/cGg																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176522545	176522545	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199694646		P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	141	549	0	ENST00000292408.4:c.1642G>A	p.Val548Met	p.V548M	ENST00000292408	NM_213647.1	548	Gtg/Atg																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176523292	176523292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	148	551	1	ENST00000292408.4:c.1949G>A	p.Arg650His	p.R650H	ENST00000292408	NM_213647.1	650	cGc/cAc																																												NEWRECORD																																		
HIST1H3I	0	MSKCC	GRCh37	6	27839907	27839907	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	671	1435	2	ENST00000328488.2:c.187A>T	p.Ile63Phe	p.I63F	ENST00000328488	NM_003533.2	63	Atc/Ttc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157405806	157405806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	124	342	0	ENST00000346085.5:c.2048G>A	p.Gly683Asp	p.G683D	ENST00000346085	NM_020732.3	683	gGc/gAc																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50468021	50468021	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	160	445	0	ENST00000331340.3:c.1259del	p.Pro420ArgfsTer40	p.P420Rfs*40	ENST00000331340	NM_006060.4	419	gCc/gc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139405176	139405176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	182	718	2	ENST00000277541.6:c.2669G>A	p.Gly890Asp	p.G890D	ENST00000277541	NM_017617.3	890	gGc/gAc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66931268	66931268	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	67	822	0	ENST00000374690.3:c.1910A>T	p.Asn637Ile	p.N637I	ENST00000374690	NM_000044.3	637	aAt/aTt																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66931335	66931335	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	111	810	0	ENST00000374690.3:c.1977G>T	p.Lys659Asn	p.K659N	ENST00000374690	NM_000044.3	659	aaG/aaT																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123181277	123181277	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	59	569	0	ENST00000218089.9:c.741A>T	p.Gln247His	p.Q247H	ENST00000218089	NM_001042749.1	247	caA/caT																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	391	499	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78919511	78919511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	233	602	0	ENST00000306801.3:c.3070G>A	p.Gly1024Ser	p.G1024S	ENST00000306801	NM_020761.2	1024	Ggc/Agc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48603148	48603148	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0005487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	147	327	0	ENST00000342988.3:c.1447+2T>C		p.X483_splice	ENST00000342988	NM_005359.5	483																																													NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15276860	15276861	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs753725730		P-0005487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	44	492	0	ENST00000263388.2:c.5404dup	p.Ala1802GlyfsTer8	p.A1802Gfs*8	ENST00000263388	NM_000435.2	1802	gct/gGct																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56448304	56448305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGT			P-0005487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	376	439	0	ENST00000407977.2:c.339_342dup	p.Ala115ThrfsTer11	p.A115Tfs*11	ENST00000407977		114	-/ACGG																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	51	598	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	177	789	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	49	427	1	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	27	365	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	87	866	0	ENST00000269305.4:c.643A>C	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	Agt/Cgt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251659	212251659	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139785964		P-0013495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	84	811	2	ENST00000342788.4:c.3400G>A	p.Val1134Met	p.V1134M	ENST00000342788	NM_005235.2	1134	Gtg/Atg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174349	112174349	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	36	511	0	ENST00000257430.4:c.3058G>T	p.Glu1020Ter	p.E1020*	ENST00000257430	NM_000038.5	1020	Gaa/Taa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177665	112177665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	48	538	0	ENST00000257430.4:c.6374C>T	p.Ser2125Phe	p.S2125F	ENST00000257430	NM_000038.5	2125	tCt/tTt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575137	48575137	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	63	713	0	ENST00000342988.3:c.331C>G	p.His111Asp	p.H111D	ENST00000342988	NM_005359.5	111	Cat/Gat																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39931954	39931955	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	98	366	0	ENST00000378444.4:c.2644dup	p.Ser882LysfsTer35	p.S882Kfs*35	ENST00000378444	NM_001123385.1	882	agt/aAgt																																												NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	85	455	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	291	518	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	69	324	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																												NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13975472	13975473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs769886672		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	59	237	1	ENST00000405192.2:c.414dup	p.Thr139HisfsTer24	p.T139Hfs*24	ENST00000405192	NM_001163147.1	138	-/C																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49427265	49427266	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	49	308	0	ENST00000301067.7:c.11220_11222dup	p.Gln3745dup	p.Q3745dup	ENST00000301067	NM_003482.3	3745	caa/caGCAa																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	110	497	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	173	469	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	307	623	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162741822	162741822	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115169993		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	129	342	0	ENST00000367921.3:c.1513G>A	p.Gly505Ser	p.G505S	ENST00000367921	NM_006182.2	505	Ggt/Agt																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202136293	202136293	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	203	548	0	ENST00000358485.4:c.537T>A	p.Phe179Leu	p.F179L	ENST00000358485	NM_001080125.1	179	ttT/ttA																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165327	47165327	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186148199		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	219	530	0	ENST00000409792.3:c.799G>A	p.Val267Ile	p.V267I	ENST00000409792	NM_014159.6	267	Gta/Ata																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	358	480	1	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121431469	121431469	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	130	477	0	ENST00000257555.6:c.673A>G	p.Ser225Gly	p.S225G	ENST00000257555		225	Agc/Ggc																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	85	272	1	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																													NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89805318	89805318	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201494304		P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	157	516	0	ENST00000389301.3:c.4232C>T	p.Pro1411Leu	p.P1411L	ENST00000389301	NM_000135.2	1411	cCg/cTg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120455	70120455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	168	680	0	ENST00000245479.2:c.1457T>C	p.Val486Ala	p.V486A	ENST00000245479	NM_000346.3	486	gTc/gCc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41573228	41573228	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	28	425	0	ENST00000263253.7:c.5513C>A	p.Thr1838Asn	p.T1838N	ENST00000263253	NM_001429.3	1838	aCt/aAt																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47006897	47006897	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	133	257	0	ENST00000329236.7:c.17G>A	p.Arg6His	p.R6H	ENST00000329236	NM_001204466.1	6	cGt/cAt																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	396792	396792	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	37	516	1	ENST00000262320.3:c.234delC	p.Thr79ProfsTer5	p.T79Pfs*5	ENST00000262320	NM_003502.3	78	ccC/cc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63845553	63845553	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	165	514	0	ENST00000279873.7:c.1295del	p.Asn432MetfsTer47	p.N432Mfs*47	ENST00000279873	NM_032199.2	431	gAa/ga																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10251782	10251782	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0004083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	45	553	1	ENST00000340748.4:c.3345del	p.Lys1117ArgfsTer16	p.K1117Rfs*16	ENST00000340748		1115	aaA/aa																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0005063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	2116	605	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12028660	12028660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	54	651	0	ENST00000353533.5:c.863C>T	p.Ser288Phe	p.S288F	ENST00000353533	NM_003010.3	288	tCt/tTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574021	7574022	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	145	790	2	ENST00000269305.4:c.1005dup	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	335	-/T																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	356	327	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																													NEWRECORD																																		
MCL1	0	MSKCC	GRCh37	1	150551677	150551677	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	76	203	0	ENST00000369026.2:c.330G>C	p.Glu110Asp	p.E110D	ENST00000369026	NM_021960.4	110	gaG/gaC																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156849083	156849083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	381	627	0	ENST00000524377.1:c.1975G>T	p.Gly659Cys	p.G659C	ENST00000524377	NM_002529.3	659	Ggc/Tgc																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220440202	220440202	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	307	916	0	ENST00000243786.2:c.1055A>G	p.Tyr352Cys	p.Y352C	ENST00000243786	NM_002191.3	352	tAt/tGt																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225422567	225422567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	158	210	0	ENST00000264414.4:c.73A>G	p.Met25Val	p.M25V	ENST00000264414	NM_003590.4	25	Atg/Gtg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89498397	89498397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	432	394	0	ENST00000336596.2:c.2369G>T	p.Trp790Leu	p.W790L	ENST00000336596	NM_005233.5	790	tGg/tTg																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741590	17741590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	151	198	0	ENST00000250003.3:c.261C>A	p.His87Gln	p.H87Q	ENST00000250003	NM_002478.4	87	caC/caA																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64136193	64136193	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	287	403	1	ENST00000334205.4:c.1352A>T	p.Gln451Leu	p.Q451L	ENST00000334205	NM_003942.2	451	cAg/cTg																																												NEWRECORD																																		
FGF19	0	MSKCC	GRCh37	11	69514163	69514163	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	351	545	0	ENST00000294312.3:c.518C>G	p.Pro173Arg	p.P173R	ENST00000294312	NM_005117.2	173	cCa/cGa																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245210	46245210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	133	371	0	ENST00000334344.6:c.3304G>T	p.Ala1102Ser	p.A1102S	ENST00000334344	NM_152641.2	1102	Gcc/Tcc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49416423	49416423	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	398	442	0	ENST00000301067.7:c.16288A>G	p.Ile5430Val	p.I5430V	ENST00000301067	NM_003482.3	5430	Atc/Gtc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49433848	49433848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	155	561	1	ENST00000301067.7:c.7705G>T	p.Gly2569Cys	p.G2569C	ENST00000301067	NM_003482.3	2569	Ggc/Tgc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133257255	133257255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	155	527	0	ENST00000320574.5:c.223G>A	p.Asp75Asn	p.D75N	ENST00000320574	NM_006231.2	75	Gat/Aat																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48953773	48953773	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	35	270	0	ENST00000267163.4:c.1376C>G	p.Ser459Cys	p.S459C	ENST00000267163	NM_000321.2	459	tCc/tGc																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73336139	73336139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	506	464	0	ENST00000377767.4:c.2264G>T	p.Cys755Phe	p.C755F	ENST00000377767	NM_014953.3	755	tGt/tTt																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95577731	95577731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	855	798	0	ENST00000343455.3:c.2179G>A	p.Asp727Asn	p.D727N	ENST00000343455	NM_177438.2	727	Gat/Aat																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88678582	88678582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	176	239	0	ENST00000360948.2:c.954G>C	p.Glu318Asp	p.E318D	ENST00000360948	NM_001012338.2	318	gaG/gaC																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88679241	88679241	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	177	538	0	ENST00000360948.2:c.796A>G	p.Ile266Val	p.I266V	ENST00000360948	NM_001012338.2	266	Atc/Gtc																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	364640	364640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	171	466	0	ENST00000262320.3:c.922G>A	p.Ala308Thr	p.A308T	ENST00000262320	NM_003502.3	308	Gcc/Acc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9923497	9923497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	242	307	0	ENST00000330684.3:c.1790C>A	p.Pro597His	p.P597H	ENST00000330684	NM_001134407.1	597	cCt/cAt																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9984951	9984951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	188	549	1	ENST00000330684.3:c.1014G>T	p.Met338Ile	p.M338I	ENST00000330684	NM_001134407.1	338	atG/atT																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89877373	89877373	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	283	392	0	ENST00000389301.3:c.390G>C	p.Glu130Asp	p.E130D	ENST00000389301	NM_000135.2	130	gaG/gaC																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435348	56435348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	243	361	0	ENST00000407977.2:c.1789C>T	p.Gln597Ter	p.Q597*	ENST00000407977		597	Caa/Taa																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117639	70117639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	160	442	1	ENST00000245479.2:c.107C>A	p.Pro36Gln	p.P36Q	ENST00000245479	NM_000346.3	36	cCg/cAg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	321	546	0	ENST00000326873.7:c.709G>C	p.Asp237His	p.D237H	ENST00000326873	NM_000455.4	237	Gac/Cac																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10270570	10270570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	278	420	0	ENST00000340748.4:c.1070G>A	p.Gly357Glu	p.G357E	ENST00000340748		357	gGg/gAg																																												NEWRECORD																																		
CCNE1	0	MSKCC	GRCh37	19	30313370	30313370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	406	578	0	ENST00000262643.3:c.970A>G	p.Ile324Val	p.I324V	ENST00000262643	NM_001238.2	324	Ata/Gta																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39932962	39932962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	366	546	0	ENST00000378444.4:c.1637G>T	p.Arg546Leu	p.R546L	ENST00000378444	NM_001123385.1	546	cGc/cTc																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411396	63411396	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	377	680	0	ENST00000330258.3:c.1771A>T	p.Arg591Trp	p.R591W	ENST00000330258	NM_152424.3	591	Agg/Tgg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411705	63411705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	439	702	0	ENST00000330258.3:c.1462G>T	p.Gly488Trp	p.G488W	ENST00000330258	NM_152424.3	488	Ggg/Tgg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412862	63412862	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	383	520	1	ENST00000330258.3:c.305C>A	p.Ala102Glu	p.A102E	ENST00000330258	NM_152424.3	102	gCa/gAa																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100617192	100617192	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	470	713	0	ENST00000308731.7:c.557A>T	p.Lys186Met	p.K186M	ENST00000308731	NM_000061.2	186	aAg/aTg																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123210312	123210312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	603	454	0	ENST00000218089.9:c.2664G>T	p.Gln888His	p.Q888H	ENST00000218089	NM_001042749.1	888	caG/caT																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11145742	11145742	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	319	538	0	ENST00000344626.4:c.4105del	p.Arg1369ValfsTer15	p.R1369Vfs*15	ENST00000344626	NM_003072.3	1368	ggC/gg																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189604306	189604307	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	403	421	0	ENST00000264731.3:c.1473_1474delinsAA	p.Pro492Thr	p.P492T	ENST00000264731	NM_003722.4	491	acTCct/acAAct																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48954340	48954340	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TT			P-0011471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	253	246	0	ENST00000267163.4:c.1461delinsTT	p.Leu487PhefsTer6	p.L487Ffs*6	ENST00000267163	NM_000321.2	487	ttG/ttTT																																												NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056588	26056590	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs751086925		P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	63	123	0	ENST00000343677.2:c.67_69del	p.Lys23del	p.K23del	ENST00000343677	NM_005319.3	23	AAG/-																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	296	335	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	47	327	0	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																												NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	201	452	2	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																												NEWRECORD																																		
HIST3H3	0	MSKCC	GRCh37	1	228612948	228612948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	271	515	1	ENST00000366696.1:c.79C>T	p.Arg27Cys	p.R27C	ENST00000366696	NM_003493.2	27	Cgc/Tgc																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41268793	41268793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	56	324	0	ENST00000349496.5:c.1031T>C	p.Leu344Pro	p.L344P	ENST00000349496	NM_001904.3	344	cTg/cCg																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189526163	189526163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	223	413	0	ENST00000264731.3:c.427G>A	p.Val143Ile	p.V143I	ENST00000264731	NM_003722.4	143	Gtc/Atc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55961103	55961103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140041720		P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	169	359	0	ENST00000263923.4:c.2837G>A	p.Arg946His	p.R946H	ENST00000263923	NM_002253.2	946	cGt/cAt																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93967193	93967193	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	183	484	0	ENST00000369303.4:c.2159A>G	p.Asp720Gly	p.D720G	ENST00000369303	NM_004440.3	720	gAt/gGt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151877208	151877208	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	92	188	0	ENST00000262189.6:c.7153C>T	p.Gln2385Ter	p.Q2385*	ENST00000262189	NM_170606.2	2385	Cag/Tag																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118342437	118342437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	52	350	0	ENST00000534358.1:c.563C>T	p.Ala188Val	p.A188V	ENST00000534358	NM_005933.3	188	gCt/gTt																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	432787	432787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	141	286	0	ENST00000399788.2:c.2129C>A	p.Pro710His	p.P710H	ENST00000399788	NM_001042603.1	710	cCc/cAc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133235941	133235941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	174	360	0	ENST00000320574.5:c.3215C>T	p.Ala1072Val	p.A1072V	ENST00000320574	NM_006231.2	1072	gCa/gTa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28931807	28931807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	166	373	0	ENST00000282397.4:c.2132C>T	p.Pro711Leu	p.P711L	ENST00000282397	NM_002019.4	711	cCa/cTa																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061484	38061484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	177	314	0	ENST00000250448.2:c.505G>A	p.Ala169Thr	p.A169T	ENST00000250448	NM_004496.3	169	Gcc/Acc																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2134632	2134632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	151	346	1	ENST00000219476.3:c.4409G>A	p.Arg1470His	p.R1470H	ENST00000219476	NM_000548.3	1470	cGc/cAc																																												NEWRECORD																																		
SOCS1	0	MSKCC	GRCh37	16	11348806	11348806	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	19	108	0	ENST00000332029.2:c.530T>C	p.Leu177Pro	p.L177P	ENST00000332029	NM_003745.1	177	cTg/cCg																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38512401	38512401	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	67	308	0	ENST00000254066.5:c.1312G>C	p.Ala438Pro	p.A438P	ENST00000254066	NM_000964.3	438	Gcc/Ccc																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120199	70120199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	49	315	0	ENST00000245479.2:c.1201C>T	p.Gln401Ter	p.Q401*	ENST00000245479	NM_000346.3	401	Cag/Tag																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15291782	15291782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	159	298	0	ENST00000263388.2:c.2984C>T	p.Pro995Leu	p.P995L	ENST00000263388	NM_000435.2	995	cCg/cTg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412635	63412635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	153	432	2	ENST00000330258.3:c.532C>T	p.Arg178Cys	p.R178C	ENST00000330258	NM_152424.3	178	Cgt/Tgt																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119145603	119145604	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	201	331	0	ENST00000264033.4:c.815dup	p.Leu272PhefsTer4	p.L272Ffs*4	ENST00000264033	NM_005188.3	270	gct/gcTt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152415640	152415641	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0011235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	130	368	0	ENST00000206249.3:c.1500_1502dup	p.Gln500dup	p.Q500dup	ENST00000206249	NM_000125.3	500	ctg/ctGCAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	397	389	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0011344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	228	198	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178927977	178927982	+	inframe_deletion	In_Frame_Del	DEL	CACTGT	CACTGT	-			P-0011344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	139	180	0	ENST00000263967.3:c.1256_1261del	p.His419_Cys420del	p.H419_C420del	ENST00000263967	NM_006218.2	419	CACTGT/-																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48923143	48923144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	166	255	0	ENST00000267163.4:c.596dup	p.Leu199PhefsTer4	p.L199Ffs*4	ENST00000267163	NM_000321.2	197	-/T																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117686323	117686323	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	307	302	0	ENST00000368508.3:c.3018A>C	p.Glu1006Asp	p.E1006D	ENST00000368508	NM_002944.2	1006	gaA/gaC																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123298137	123298143	+	frameshift_variant	Frame_Shift_Del	DEL	GGACCCG	GGACCCG	-			P-0011344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	355	402	0	ENST00000358487.5:c.711_717del	p.Tyr237Ter	p.Y237*	ENST00000358487	NM_000141.4	237	taCGGGTCC/ta																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160762	56160762	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			46	41	342	0	ENST00000399503.3:c.1035+1G>T		p.X345_splice	ENST00000399503	NM_005921.1	345																																													NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87549094	87549094	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	12	398	0	ENST00000277120.3:c.1651C>T	p.Arg551Ter	p.R551*	ENST00000277120		551	Cga/Tga																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	30	251	0	ENST00000371953.3:c.275A>T	p.Asp92Val	p.D92V	ENST00000371953	NM_000314.4	92	gAc/gTc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115118706	115118706	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	27	400	0	ENST00000257566.3:c.635A>T	p.Asn212Ile	p.N212I	ENST00000257566	NM_016569.3	212	aAc/aTc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164867	36164868	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	47	224	0	ENST00000300305.3:c.1007dup	p.Ala338ArgfsTer262	p.A338Rfs*262	ENST00000300305		336	ttc/ttTc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56170864	56170865	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	21	311	0	ENST00000399503.3:c.1694dup	p.Met566AsnfsTer10	p.M566Nfs*10	ENST00000399503	NM_005921.1	564	-/G																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	278	407	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	191	289	0	ENST00000269305.4:c.406C>G	p.Gln136Glu	p.Q136E	ENST00000269305	NM_001126112.2	136	Caa/Gaa																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	296	534	0	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178919264	178919264	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	240	396	0	ENST00000263967.3:c.749A>T	p.Tyr250Phe	p.Y250F	ENST00000263967	NM_006218.2	250	tAt/tTt																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66217211	66217211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	106	473	0	ENST00000273854.3:c.2404G>A	p.Ala802Thr	p.A802T	ENST00000273854	NM_004439.5	802	Gct/Act																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64137834	64137834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	51	454	0	ENST00000334205.4:c.1935G>T	p.Glu645Asp	p.E645D	ENST00000334205	NM_003942.2	645	gaG/gaT																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593507	48593507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	290	312	0	ENST00000342988.3:c.1258C>T	p.Arg420Cys	p.R420C	ENST00000342988	NM_005359.5	420	Cgt/Tgt																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252875	36252875	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	195	436	0	ENST00000300305.3:c.487T>G	p.Phe163Val	p.F163V	ENST00000300305		163	Ttt/Gtt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106313	27106314	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	141	362	0	ENST00000324856.7:c.5924_5925del	p.Asp1975ValfsTer23	p.D1975Vfs*23	ENST00000324856	NM_006015.4	1975	gAT/g																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215646129	215646131	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0003870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1570	201	382	0	ENST00000260947.4:c.467_469del	p.Tyr156_Val157delinsPhe	p.Y156_V157delinsF	ENST00000260947	NM_000465.2	156	tATGtt/ttt																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCT			P-0006965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	422	567	0	ENST00000269571.5:c.2314_2325dupTACGTGATGGCT	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	203	572	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971179	21971179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36204594		P-0006965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	33	197	0	ENST00000304494.5:c.179C>T	p.Ala60Val	p.A60V	ENST00000304494	NM_000077.4	60	gCg/gTg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971179	21971179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs36204594		P-0006965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	33	197	0	ENST00000304494.5:c.179C>T	p.Ala60Val	p.A60V	ENST00000304494	NM_000077.4	60	gCg/gTg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	141	272	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	153	280	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0009846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	549	708	3	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	2473	562	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25978935	25978935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	377	613	0	ENST00000435504.4:c.988G>A	p.Glu330Lys	p.E330K	ENST00000435504		330	Gaa/Aaa																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2222277	2222277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	236	626	0	ENST00000398665.3:c.3109C>T	p.Pro1037Ser	p.P1037S	ENST00000398665	NM_032482.2	1037	Cct/Tct																																												NEWRECORD																																		
SOX2	0	MSKCC	GRCh37	3	181430508	181430508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	65	459	0	ENST00000325404.1:c.360G>A	p.Met120Ile	p.M120I	ENST00000325404	NM_003106.3	120	atG/atA																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118359345	118359345	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	150	539	0	ENST00000534358.1:c.4349T>G	p.Val1450Gly	p.V1450G	ENST00000534358	NM_005933.3	1450	gTc/gGc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118371743	118371743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	49	486	0	ENST00000534358.1:c.6200G>A	p.Arg2067His	p.R2067H	ENST00000534358	NM_005933.3	2067	cGc/cAc																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061456	38061456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	283	412	0	ENST00000250448.2:c.533T>C	p.Leu178Pro	p.L178P	ENST00000250448	NM_004496.3	178	cTc/cCc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49427023	49427032	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGGGGGC	CCCTGGGGGC	-			P-0009846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	241	378	0	ENST00000301067.7:c.11456_11465del	p.Gly3819AlafsTer8	p.G3819Afs*8	ENST00000301067	NM_003482.3	3819	gGCCCCCAGGGc/gc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27088654	27088655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	565	695	0	ENST00000324856.7:c.2265dup	p.Asn756GlufsTer61	p.N756Efs*61	ENST00000324856	NM_006015.4	755	agg/aGgg																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149961	202149962	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0009846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	350	561	0	ENST00000358485.4:c.1405_1406del	p.Val469PhefsTer28	p.V469Ffs*28	ENST00000358485	NM_001080125.1	468	TGt/t																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	211	683	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	92	660	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	42	707	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18439857	18439858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	77	577	1	ENST00000266497.5:c.761dup	p.Ile255AsnfsTer9	p.I255Nfs*9	ENST00000266497		252	gta/gtAa																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30128292	30128292	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1796	294	1291	0	ENST00000263025.4:c.940A>C	p.Asn314His	p.N314H	ENST00000263025	NM_002746.2	314	Aac/Cac																																												NEWRECORD																																		
BCL2	0	MSKCC	GRCh37	18	60985521	60985521	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	137	759	4	ENST00000333681.4:c.379C>T	p.Arg127Trp	p.R127W	ENST00000333681		127	Cgg/Tgg																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55561764	55561764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	36	641	3	ENST00000288135.5:c.154G>T	p.Asp52Tyr	p.D52Y	ENST00000288135	NM_000222.2	52	Gac/Tac																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162394430	162394430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	174	741	0	ENST00000366898.1:c.638G>C	p.Gly213Ala	p.G213A	ENST00000366898	NM_004562.2	213	gGa/gCa																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47428200	47428200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	320	1157	0	ENST00000377045.4:c.1160G>T	p.Gly387Val	p.G387V	ENST00000377045	NM_001654.4	387	gGc/gTc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	214	314	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225																																													NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175378	112175378	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	171	263	0	ENST00000257430.4:c.4087A>T	p.Lys1363Ter	p.K1363*	ENST00000257430	NM_000038.5	1363	Aaa/Taa																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32185789	32185789	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	189	565	0	ENST00000375023.3:c.1607A>T	p.Gln536Leu	p.Q536L	ENST00000375023	NM_004557.3	536	cAg/cTg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412679	139412679	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	112	509	0	ENST00000277541.6:c.1165A>C	p.Thr389Pro	p.T389P	ENST00000277541	NM_017617.3	389	Acc/Ccc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43601917	43601917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	192	524	0	ENST00000355710.3:c.961G>A	p.Gly321Arg	p.G321R	ENST00000355710	NM_020975.4	321	Ggg/Agg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108213967	108213967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	311	338	0	ENST00000278616.4:c.8287C>T	p.Arg2763Ter	p.R2763*	ENST00000278616	NM_000051.3	2763	Cga/Tga																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28589729	28589729	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0005938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	118	505	0	ENST00000241453.7:c.2651T>C	p.Leu884Pro	p.L884P	ENST00000241453	NM_004119.2	884	cTt/cCt																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2191015	2191015	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	64	330	0	ENST00000398665.3:c.269A>C	p.Lys90Thr	p.K90T	ENST00000398665	NM_032482.2	90	aAg/aCg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2226770	2226770	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	44	427	0	ENST00000398665.3:c.4250A>T	p.Glu1417Val	p.E1417V	ENST00000398665	NM_032482.2	1417	gAg/gTg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5220162	5220162	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	136	345	0	ENST00000357368.4:c.3553A>C	p.Ile1185Leu	p.I1185L	ENST00000357368	NM_002850.3	1185	Atc/Ctc																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28636206	28636208	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	INS	CCT	CCT	ACCA			P-0005938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	152	387	0	ENST00000241453.7:c.166-2_166delinsTGGT		p.X56_splice	ENST00000241453	NM_004119.2	56																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	288	399	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142261554	142261555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	120	445	0	ENST00000350721.4:c.3402dupT	p.Asn1135Ter	p.N1135*	ENST00000350721	NM_001184.3	1134	-/T																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0012542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	177	728	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																												NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	98	307	5	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16086001	16086001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	172	391	1	ENST00000281043.3:c.1177C>T	p.Arg393Cys	p.R393C	ENST00000281043	NM_005378.4	393	Cgc/Tgc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106072	27106072	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	109	323	1	ENST00000324856.7:c.5683G>T	p.Glu1895Ter	p.E1895*	ENST00000324856	NM_006015.4	1895	Gag/Tag																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55599359	55599359	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0012542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	54	307	0	ENST00000288135.5:c.2484+1G>A		p.X828_splice	ENST00000288135	NM_000222.2	828																																													NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38950303	38950303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	98	461	1	ENST00000357387.3:c.3647G>A	p.Arg1216His	p.R1216H	ENST00000357387	NM_152756.3	1216	cGt/cAt																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2962857	2962857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	132	445	1	ENST00000396946.4:c.2051G>T	p.Gly684Val	p.G684V	ENST00000396946	NM_032415.4	684	gGg/gTg																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116423410	116423410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	77	422	0	ENST00000397752.3:c.3685A>G	p.Met1229Val	p.M1229V	ENST00000397752	NM_000245.2	1229	Atg/Gtg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692985	89692985	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	67	259	0	ENST00000371953.3:c.469G>T	p.Glu157Ter	p.E157*	ENST00000371953	NM_000314.4	157	Gaa/Taa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49432464	49432464	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	189	580	1	ENST00000301067.7:c.8675del	p.Gly2892AlafsTer18	p.G2892Afs*18	ENST00000301067	NM_003482.3	2892	gGc/gc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692918	89692918	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	110	335	0	ENST00000371953.3:c.402del	p.Met134IlefsTer13	p.M134Ifs*13	ENST00000371953	NM_000314.4	134	atG/at																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151835904	151835904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	19	462	1	ENST00000262189.6:c.14620C>T	p.Arg4874Trp	p.R4874W	ENST00000262189	NM_170606.2	4874	Cgg/Tgg																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149460417	149460417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	13	611	1	ENST00000286301.3:c.220G>A	p.Ala74Thr	p.A74T	ENST00000286301	NM_005211.3	74	Gct/Act																																												NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	14	352	2	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591115	67591116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	23	343	0	ENST00000274335.5:c.1710dupT	p.Ile571TyrfsTer31	p.I571Yfs*31	ENST00000274335		570	ctt/cTtt																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89693003	89693003	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	18	219	0	ENST00000371953.3:c.491del	p.Lys164ArgfsTer3	p.K164Rfs*3	ENST00000371953	NM_000314.4	163	Aaa/aa																																												NEWRECORD																																		
CDKN2C	0	MSKCC	GRCh37	1	51439586	51439586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	19	428	0	ENST00000262662.1:c.151G>A	p.Glu51Lys	p.E51K	ENST00000262662		51	Gag/Aag																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	231046	231046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	17	518	3	ENST00000264932.6:c.826G>A	p.Gly276Ser	p.G276S	ENST00000264932	NM_004168.2	276	Ggc/Agc																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57751979	57751979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	19	449	0	ENST00000274289.3:c.1258C>T	p.Leu420Phe	p.L420F	ENST00000274289	NM_006622.3	420	Ctc/Ttc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42041117	42041117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	22	894	3	ENST00000219905.7:c.5495G>A	p.Arg1832Gln	p.R1832Q	ENST00000219905	NM_001164273.1	1832	cGg/cAg																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627177	37627177	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	16	450	0	ENST00000447079.4:c.1092A>T	p.Arg364Ser	p.R364S	ENST00000447079	NM_015083.1	364	agA/agT																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18273217	18273217	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	13	726	0	ENST00000222254.8:c.1011-1G>T		p.X337_splice	ENST00000222254	NM_005027.3	337																																													NEWRECORD																																		
U2AF1	0	MSKCC	GRCh37	21	44515807	44515807	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	17	505	0	ENST00000291552.4:c.246del	p.Phe82LeufsTer15	p.F82Lfs*15	ENST00000291552	NM_006758.2	82	ttT/tt																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65321268	65321269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	12	410	0	ENST00000342505.4:c.1571dup	p.Ser524ArgfsTer12	p.S524Rfs*12	ENST00000342505	NM_002227.2	524	agc/agGc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29560181	29560181	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	31	282	1	ENST00000358273.4:c.3658G>T	p.Glu1220Ter	p.E1220*	ENST00000358273	NM_001042492.2	1220	Gaa/Taa																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65325822	65325822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	37	240	0	ENST00000342505.4:c.1300C>T	p.His434Tyr	p.H434Y	ENST00000342505	NM_002227.2	434	Cac/Tac																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47630377	47630377	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	32	242	0	ENST00000233146.2:c.47A>C	p.Glu16Ala	p.E16A	ENST00000233146	NM_000251.2	16	gAg/gCg																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37092115	37092115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	51	475	0	ENST00000231790.2:c.2242G>A	p.Asp748Asn	p.D748N	ENST00000231790	NM_000249.3	748	Gat/Aat																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81934333	81934333	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	24	462	0	ENST00000359376.3:c.1310G>C	p.Ser437Thr	p.S437T	ENST00000359376	NM_002661.3	437	aGt/aCt																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41245210	41245210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	31	454	0	ENST00000357654.3:c.2338C>G	p.Gln780Glu	p.Q780E	ENST00000357654	NM_007294.3	780	Cag/Gag																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45375012	45375012	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	40	346	0	ENST00000262160.6:c.831A>G	p.Ile277Met	p.I277M	ENST00000262160	NM_005901.5	277	atA/atG																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5069132	5069178	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTTACCAGATGGAAACTGTTCGCTCAGACAATATAATTTTCCAGT	TTGTTACCAGATGGAAACTGTTCGCTCAGACAATATAATTTTCCAGT	-			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	34	416	0	ENST00000381652.3:c.1439_1485del	p.Cys480TyrfsTer2	p.C480Yfs*2	ENST00000381652	NM_004972.3	479	aaTTGTTACCAGATGGAAACTGTTCGCTCAGACAATATAATTTTCCAGTtt/aatt																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2210502	2210502	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	21	253	0	ENST00000398665.3:c.1113del	p.Met372TrpfsTer15	p.M372Wfs*15	ENST00000398665	NM_032482.2	370	gCc/gc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602501	10602511	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCAGGTCCG	CTGCAGGTCCG	-			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	24	249	0	ENST00000171111.5:c.1067_1077del	p.Ala356GlyfsTer55	p.A356Gfs*55	ENST00000171111	NM_203500.1	356	gCGGACCTGCAG/g																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86681204	86681204	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	38	255	0	ENST00000274376.6:c.2846del	p.Lys949ArgfsTer19	p.K949Rfs*19	ENST00000274376	NM_002890.2	949	Aag/ag																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55973912	55973913	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	25	231	0	ENST00000263923.4:c.1403dup	p.Asn468LysfsTer16	p.N468Kfs*16	ENST00000263923	NM_002253.2	468	aac/aaAc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116399449	116399449	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	43	484	0	ENST00000397752.3:c.2271del	p.Ser758AlafsTer3	p.S758Afs*3	ENST00000397752	NM_000245.2	757	Ggg/gg																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	173	307	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70405566	70405566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	237	489	1	ENST00000373644.4:c.3080C>T	p.Thr1027Ile	p.T1027I	ENST00000373644	NM_030625.2	1027	aCt/aTt																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81888076	81888076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	167	376	0	ENST00000359376.3:c.221G>A	p.Arg74His	p.R74H	ENST00000359376	NM_002661.3	74	cGc/cAc																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37619130	37619130	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			978	274	484	0	ENST00000447079.4:c.807delC	p.Ser270ArgfsTer68	p.S270Rfs*68	ENST00000447079	NM_015083.1	269	aCc/ac																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37671993	37671994	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	321	407	0	ENST00000447079.4:c.2782dupG	p.Glu928GlyfsTer27	p.E928Gfs*27	ENST00000447079	NM_015083.1	926	-/G																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93969177	93969177	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	67	298	0	ENST00000369303.4:c.1819A>T	p.Thr607Ser	p.T607S	ENST00000369303	NM_004440.3	607	Acc/Tcc																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061228	38061240	+	protein_altering_variant	In_Frame_Del	DEL	AACATGTTGCCGG	AACATGTTGCCGG	C			P-0014566-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1568	222	533	0	ENST00000250448.2:c.749_761delinsG	p.Ser250_Phe254delinsCys	p.S250_F254delinsC	ENST00000250448	NM_004496.3	250	tCCGGCAACATGTTc/tGc																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000193-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	258	382	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106078	27106078	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000193-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	174	268	0	ENST00000324856.7:c.5693delC	p.Pro1898HisfsTer25	p.P1898Hfs*25	ENST00000324856	NM_006015.4	1897	Ccc/cc																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000193-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	356	400	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc																																												NEWRECORD																																		
PDPK1	0	MSKCC	GRCh37	16	2647668	2647668	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000193-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	280	546	0	ENST00000342085.4:c.1571A>G	p.Tyr524Cys	p.Y524C	ENST00000342085	NM_002613.4	524	tAt/tGt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27058052	27058064	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGCAAACTGC	CCCAGCAAACTGC	-			P-0000193-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	40	145	0	ENST00000324856.7:c.1761_1773delCCAGCAAACTGCC	p.Gln588IlefsTer27	p.Q588Ifs*27	ENST00000324856	NM_006015.4	587	tCCCAGCAAACTGCc/tc																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67654669	67654670	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0000193-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			719	419	536	0	ENST00000264010.4:c.1157dupA	p.Tyr386Ter	p.Y386*	ENST00000264010	NM_006565.3	386	tat/tAat																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68846087	68846102	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGGTTAAGCACAAC	AGGGGTTAAGCACAAC	-			P-0000193-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	239	479	0	ENST00000261769.5:c.1060_1075delGGGTTAAGCACAACAG	p.Gly354GlnfsTer4	p.G354Qfs*4	ENST00000261769	NM_004360.3	353	gAGGGGTTAAGCACAACa/ga																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	259	266	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	775	552	0	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46243561	46243561	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	206	267	1	ENST00000334344.6:c.1912+2T>G		p.X638_splice	ENST00000334344	NM_152641.2	638																																													NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061193	38061193	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	170	367	0	ENST00000250448.2:c.796T>G	p.Phe266Val	p.F266V	ENST00000250448	NM_004496.3	266	Ttc/Gtc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857070	9857070	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	330	557	0	ENST00000330684.3:c.4331T>A	p.Val1444Asp	p.V1444D	ENST00000330684	NM_001134407.1	1444	gTt/gAt																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696435	47696435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	373	512	0	ENST00000347630.2:c.388G>C	p.Asp130His	p.D130H	ENST00000347630	NM_001007230.1	130	Gac/Cac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577517	7577518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	473	514	0	ENST00000269305.4:c.763dup	p.Ile255AsnfsTer9	p.I255Nfs*9	ENST00000269305	NM_001126112.2	255	atc/aAtc																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185167709	185167709	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001010-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			13	44	634	0	ENST00000265026.3:c.1032G>A	p.Trp344Ter	p.W344*	ENST00000265026	NM_004721.4	344	tgG/tgA																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81554312	81554313	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTA			P-0001010-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			83	10	641	0	ENST00000298171.2:c.332_333insTTA	p.Thr111_Arg112insTyr	p.T111_R112insY	ENST00000298171	NM_000369.2	111	acc/acTTAc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	429	601	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177011	56177014	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	111	426	0	ENST00000399503.3:c.2286_2289delTAGA	p.Arg763CysfsTer35	p.R763Cfs*35	ENST00000399503	NM_005921.1	761	ATAGat/at																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149983017	149983017	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	172	638	2	ENST00000253339.5:c.3241C>T	p.Arg1081Ter	p.R1081*	ENST00000253339		1081	Cga/Tga																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8499771	8499771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	184	587	1	ENST00000356435.5:c.2198G>A	p.Arg733His	p.R733H	ENST00000356435		733	cGc/cAc																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18491373	18491373	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	255	434	0	ENST00000266497.5:c.1286A>G	p.Asn429Ser	p.N429S	ENST00000266497		429	aAt/aGt																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57859039	57859039	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	150	704	0	ENST00000228682.2:c.534+1G>A		p.X178_splice	ENST00000228682	NM_005269.2	178																																													NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3830754	3830754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	163	494	1	ENST00000262367.5:c.1802G>A	p.Arg601Gln	p.R601Q	ENST00000262367	NM_004380.2	601	cGg/cAg																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45374853	45374853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	71	427	0	ENST00000262160.6:c.990G>T	p.Arg330Ser	p.R330S	ENST00000262160	NM_005901.5	330	agG/agT																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5229569	5229569	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	40	168	0	ENST00000357368.4:c.2282T>A	p.Val761Glu	p.V761E	ENST00000357368	NM_002850.3	761	gTg/gAg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56184093	56184094	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AC			P-0006249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	126	563	0	ENST00000399503.3:c.4298_4299insAC	p.Trp1433Ter	p.W1433*	ENST00000399503	NM_005921.1	1433	tgg/tgACg																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12870888	12870888	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	252	328	0	ENST00000228872.4:c.115G>T	p.Glu39Ter	p.E39*	ENST00000228872	NM_004064.3	39	Gaa/Taa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41961308	41961308	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	370	626	0	ENST00000219905.7:c.218del	p.Gly73ValfsTer23	p.G73Vfs*23	ENST00000219905	NM_001164273.1	72	gtG/gt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579837	7579838	+	splice_donor_variant	Splice_Site	INS	-	-	CAGTTTCC			P-0006994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	263	421	0	ENST00000269305.4:c.68_74+1dup		p.X23_splice	ENST00000269305	NM_001126112.2	23																																													NEWRECORD																																		
NKX3-1	0	MSKCC	GRCh37	8	23538906	23538907	+	inframe_insertion	In_Frame_Ins	INS	-	-	TATAGCGTC			P-0006994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	254	431	0	ENST00000380871.4:c.524_532dup	p.Arg175_Tyr177dup	p.R175_Y177dup	ENST00000380871	NM_006167.3	175	aag/aGACGCTATAag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	81	403	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	127	233	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	44	234	0	ENST00000288602.6:c.1781A>T	p.Asp594Val	p.D594V	ENST00000288602	NM_004333.4	594	gAt/gTt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	308	360	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	303	372	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	415	471	0	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114925435	114925435	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	349	508	0	ENST00000543371.1:c.1513C>T	p.Arg505Ter	p.R505*	ENST00000543371	NM_001198531.1	505	Cga/Tga																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29588835	29588836	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	55	410	0	ENST00000358273.4:c.4686dup	p.Asn1563Ter	p.N1563*	ENST00000358273	NM_001042492.2	1562	ctt/cTtt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	26	360	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	227	350	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87563465	87563465	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs202136187		P-0008271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	26	312	0	ENST00000277120.3:c.1853A>G	p.Lys618Arg	p.K618R	ENST00000277120		618	aAg/aGg																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63661474	63661474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	74	330	1	ENST00000279873.7:c.6G>T	p.Glu2Asp	p.E2D	ENST00000279873	NM_032199.2	2	gaG/gaT																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5239002	5239002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	29	485	0	ENST00000357368.4:c.1777C>T	p.Arg593Cys	p.R593C	ENST00000357368	NM_002850.3	593	Cgc/Tgc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42791802	42791802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	47	342	1	ENST00000575354.2:c.688G>A	p.Val230Ile	p.V230I	ENST00000575354	NM_015125.3	230	Gtc/Atc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42791971	42791972	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	348	472	0	ENST00000575354.2:c.778dup	p.His260ProfsTer55	p.H260Pfs*55	ENST00000575354	NM_015125.3	259	gcc/gCcc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	347	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630465	187630465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	162	402	0	ENST00000441802.2:c.517G>A	p.Ala173Thr	p.A173T	ENST00000441802	NM_005245.3	173	Gcc/Acc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175153	112175153	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	168	179	0	ENST00000257430.4:c.3862G>T	p.Gly1288Ter	p.G1288*	ENST00000257430	NM_000038.5	1288	Gga/Tga																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20488427	20488427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	133	356	0	ENST00000346618.3:c.1083G>A	p.Met361Ile	p.M361I	ENST00000346618	NM_001949.4	361	atG/atA																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934918	9934918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	119	329	0	ENST00000330684.3:c.1372G>A	p.Gly458Arg	p.G458R	ENST00000330684	NM_001134407.1	458	Ggg/Agg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938562	76938562	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	117	412	1	ENST00000373344.5:c.2186C>A	p.Ser729Ter	p.S729*	ENST00000373344	NM_000489.3	729	tCa/tAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	170	269	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114900944	114900945	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0003210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	207	343	0	ENST00000543371.1:c.555dup	p.Asn186Ter	p.N186*	ENST00000543371	NM_001198531.1	185	tct/tcTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			96	76	279	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	144	288	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	106	394	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246671	46246671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			113	27	96	0	ENST00000334344.6:c.4765G>T	p.Val1589Phe	p.V1589F	ENST00000334344	NM_152641.2	1589	Gtc/Ttc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49447892	49447892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	29	139	0	ENST00000301067.7:c.542C>T	p.Ser181Phe	p.S181F	ENST00000301067	NM_003482.3	181	tCc/tTc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56491692	56491692	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	34	341	0	ENST00000267101.3:c.2584G>C	p.Asp862His	p.D862H	ENST00000267101	NM_001982.3	862	Gat/Cat																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28623559	28623559	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	25	251	0	ENST00000241453.7:c.998C>G	p.Ser333Ter	p.S333*	ENST00000241453	NM_004119.2	333	tCa/tGa																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103527709	103527709	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	87	267	0	ENST00000355739.4:c.3017A>C	p.Asp1006Ala	p.D1006A	ENST00000355739	NM_000123.3	1006	gAt/gCt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29557904	29557904	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	47	144	0	ENST00000358273.4:c.3158C>G	p.Ser1053Ter	p.S1053*	ENST00000358273	NM_001042492.2	1053	tCa/tGa																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86658489	86658490	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	39	278	0	ENST00000274376.6:c.1453+2dup		p.X485_splice	ENST00000274376	NM_002890.2	485																																													NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11984696	11984697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0001383-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			59	36	87	0	ENST00000353533.5:c.243_244insAT	p.Glu82MetfsTer7	p.E82Mfs*7	ENST00000353533	NM_003010.3	81	att/atTAt																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0004359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	789	215	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	435	112	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40498697	40498697	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	381	364	0	ENST00000264657.5:c.163T>G	p.Leu55Val	p.L55V	ENST00000264657	NM_139276.2	55	Ttg/Gtg																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546984	9546985	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0004359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	18	93	0	ENST00000353224.5:c.1037_1038delinsTC	p.Gly346Val	p.G346V	ENST00000353224	NM_177990.2	346	gGG/gTC																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	1120	500	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	300	298	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99172089	99172089	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	130	272	0	ENST00000074304.5:c.1655A>G	p.Glu552Gly	p.E552G	ENST00000074304	NM_001134224.1	552	gAg/gGg																																												NEWRECORD																																		
FAM175A	0	MSKCC	GRCh37	4	84388647	84388647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	337	610	0	ENST00000321945.7:c.641A>T	p.Lys214Met	p.K214M	ENST00000321945	NM_139076.2	214	aAg/aTg																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149460401	149460401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	165	495	0	ENST00000286301.3:c.236C>T	p.Thr79Met	p.T79M	ENST00000286301	NM_005211.3	79	aCg/aTg																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116339301	116339301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	383	564	0	ENST00000397752.3:c.163G>A	p.Val55Ile	p.V55I	ENST00000397752	NM_000245.2	55	Gtc/Atc																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64129374	64129374	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142374327		P-0001102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	206	577	0	ENST00000334205.4:c.806C>T	p.Ala269Val	p.A269V	ENST00000334205	NM_003942.2	269	gCg/gTg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108178641	108178641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	167	164	0	ENST00000278616.4:c.5692C>T	p.Arg1898Ter	p.R1898*	ENST00000278616	NM_000051.3	1898	Cga/Tga																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56482425	56482425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	359	302	0	ENST00000267101.3:c.973G>A	p.Gly325Arg	p.G325R	ENST00000267101	NM_001982.3	325	Gga/Aga																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31019265	31019265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	247	469	0	ENST00000375687.4:c.860T>C	p.Leu287Pro	p.L287P	ENST00000375687	NM_015338.5	287	cTc/cCc																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57470712	57470712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	153	233	0	ENST00000371085.3:c.185T>C	p.Ile62Thr	p.I62T	ENST00000371085	NM_000516.4	62	aTc/aCc																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001102-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	296	285	0	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	110	323	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	96	388	0	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	98	342	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	89	307	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294372	1294372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	48	142	0	ENST00000310581.5:c.629C>T	p.Ala210Val	p.A210V	ENST00000310581	NM_198253.2	210	gCc/gTc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	52	414	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	92	291	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20402537	20402537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	15	75	0	ENST00000346618.3:c.74T>C	p.Val25Ala	p.V25A	ENST00000346618	NM_001949.4	25	gTc/gCc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56439924	56439924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	52	134	1	ENST00000407977.2:c.668G>A	p.Arg223His	p.R223H	ENST00000407977		223	cGc/cAc																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	131	491	6	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72058529	72058529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	151	460	0	ENST00000357731.5:c.911G>A	p.Gly304Asp	p.G304D	ENST00000357731	NM_173808.2	304	gGc/gAc																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37042530	37042530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	123	374	0	ENST00000231790.2:c.292G>A	p.Gly98Ser	p.G98S	ENST00000231790	NM_000249.3	98	Ggc/Agc																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294223	1294223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	52	170	0	ENST00000310581.5:c.778G>A	p.Gly260Ser	p.G260S	ENST00000310581	NM_198253.2	260	Ggc/Agc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112164611	112164611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	74	241	0	ENST00000257430.4:c.1685C>T	p.Thr562Met	p.T562M	ENST00000257430	NM_000038.5	562	aCg/aTg																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41739599	41739599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	120	368	0	ENST00000242208.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000242208	NM_002192.2	125	aCg/aTg																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21994291	21994291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	61	240	0	ENST00000361570.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000361570	NM_058195.3	55	Gcg/Acg																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21994291	21994291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	61	240	0	ENST00000361570.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000361570	NM_058195.3	55	Gcg/Acg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717778	89717778	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	21	146	0	ENST00000371953.3:c.801+2T>C		p.X267_splice	ENST00000371953	NM_000314.4	267																																													NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114912171	114912171	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	78	485	0	ENST00000543371.1:c.1241A>G	p.Tyr414Cys	p.Y414C	ENST00000543371	NM_001198531.1	414	tAc/tGc																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121416701	121416701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	98	360	0	ENST00000257555.6:c.130C>G	p.Leu44Val	p.L44V	ENST00000257555		44	Ctg/Gtg																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435414	110435414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	46	138	0	ENST00000375856.3:c.2987G>A	p.Gly996Asp	p.G996D	ENST00000375856	NM_003749.2	996	gGc/gAc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101401	27101402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	39	280	0	ENST00000324856.7:c.4689dup	p.Met1564HisfsTer8	p.M1564Hfs*8	ENST00000324856	NM_006015.4	1561	-/C																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16260214	16260214	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	47	144	0	ENST00000375759.3:c.7484delC	p.Pro2495LeufsTer4	p.P2495Lfs*4	ENST00000375759	NM_015001.2	2493	agC/ag																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46265048	46265049	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	133	529	0	ENST00000371998.3:c.1924dup	p.Leu642ProfsTer6	p.L642Pfs*6	ENST00000371998		640	tcc/tCcc																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59247903	59247904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	185	506	0	ENST00000371222.2:c.839dup	p.Glu281GlyfsTer29	p.E281Gfs*29	ENST00000371222	NM_002228.3	280	ctg/ctTg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28964077	28964077	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	100	371	0	ENST00000282397.4:c.1825del	p.Met609TrpfsTer16	p.M609Wfs*16	ENST00000282397	NM_002019.4	609	Atg/tg																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	90	314	0	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	121	458	1	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																												NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	107	346	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49433874	49433875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	60	302	0	ENST00000301067.7:c.7678dup	p.His2560ProfsTer95	p.H2560Pfs*95	ENST00000301067	NM_003482.3	2560	cat/cCat																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81554355	81554355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	108	391	2	ENST00000298171.2:c.379del	p.Leu127SerfsTer2	p.L127Sfs*2	ENST00000298171	NM_000369.2	125	ctC/ct																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59247812	59247813	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1370	225	511	0	ENST00000371222.2:c.930_931delGA	p.Lys311SerfsTer6	p.K311Sfs*6	ENST00000371222	NM_002228.3	310	caGAaa/caaa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174783	112174783	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	92	293	0	ENST00000257430.4:c.3495del	p.Lys1165AsnfsTer17	p.K1165Nfs*17	ENST00000257430	NM_000038.5	1164	atA/at																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	103	290	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	272	606	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56161795	56161795	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	58	340	0	ENST00000399503.3:c.1292C>A	p.Ser431Ter	p.S431*	ENST00000399503	NM_005921.1	431	tCa/tAa																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103527792	103527792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	138	628	0	ENST00000355739.4:c.3100A>G	p.Ile1034Val	p.I1034V	ENST00000355739	NM_000123.3	1034	Ata/Gta																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56167801	56167802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	142	513	0	ENST00000399503.3:c.1368dupT	p.Thr457TyrfsTer4	p.T457Yfs*4	ENST00000399503	NM_005921.1	456	ctt/cTtt																																												NEWRECORD																																		
FOXA1	3169	MSKCC	GRCh37	14	38061218	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCCGTTCTCGAACATGTT	GCCGTTCTCGAACATGTT	-			P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	131	368	0	ENST00000250448.2:c.754_771del	p.Asn252_Gly257del	p.N252_G257del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGC/-																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53240740	53240752	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGAATGGATGT	TTGGAATGGATGT	GA			P-0005950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	294	741	0	ENST00000375401.3:c.1328_1340delinsTC	p.Asp443ValfsTer11	p.D443Vfs*11	ENST00000375401	NM_004187.3	443	gACATCCATTCCAAa/gTCa																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001424-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			630	211	402	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001424-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			357	184	211	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001424-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			419	79	264	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001424-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			249	150	388	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38285870	38285870	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0001424-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			507	184	577	1	ENST00000425967.3:c.541C>T	p.Pro181Ser	p.P181S	ENST00000425967	NM_001174067.1	181	Ccc/Tcc																																												NEWRECORD																																		
MEF2B	0	MSKCC	GRCh37	19	19261493	19261493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001424-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			479	194	543	1	ENST00000162023.5:c.52C>A	p.Gln18Lys	p.Q18K	ENST00000162023		18	Cag/Aag																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76763953	76763953	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001424-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			622	172	593	0	ENST00000373344.5:c.7355A>T	p.Gln2452Leu	p.Q2452L	ENST00000373344	NM_000489.3	2452	cAg/cTg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112116586	112116587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001424-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			443	163	328	0	ENST00000257430.4:c.636dup	p.Arg213ThrfsTer39	p.R213Tfs*39	ENST00000257430	NM_000038.5	211	gaa/gAaa																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26032129	26032130	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0001424-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			622	128	302	0	ENST00000244661.2:c.158_159dup	p.Arg54AlafsTer10	p.R54Afs*10	ENST00000244661	NM_003537.3	53	-/GC																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	34	158	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	54	529	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	134	272	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45873425	45873425	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	179	430	0	ENST00000391945.4:c.71A>G	p.Tyr24Cys	p.Y24C	ENST00000391945	NM_000400.3	24	tAc/tGc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30691889	30691889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	57	285	0	ENST00000359013.4:c.466G>A	p.Glu156Lys	p.E156K	ENST00000359013	NM_001024847.2	156	Gag/Aag																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52442080	52442080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	52	309	0	ENST00000460680.1:c.269C>G	p.Ser90Cys	p.S90C	ENST00000460680	NM_004656.3	90	tCt/tGt																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52443892	52443892	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	115	341	0	ENST00000460680.1:c.3G>A	p.Met1?	p.M1?	ENST00000460680	NM_004656.3	1	atG/atA																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52668637	52668637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	30	419	3	ENST00000394830.3:c.1282A>G	p.Ile428Val	p.I428V	ENST00000394830	NM_018313.4	428	Ata/Gta																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119812218	119812218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	47	391	0	ENST00000316626.5:c.64G>A	p.Ala22Thr	p.A22T	ENST00000316626		22	Gct/Act																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106157573	106157573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	46	407	0	ENST00000380013.4:c.2474C>T	p.Ser825Leu	p.S825L	ENST00000380013	NM_001127208.2	825	tCa/tTa																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112569	115112569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	139	410	0	ENST00000257566.3:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000257566	NM_016569.3	391	Gac/Aac																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26927961	26927961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	27	387	0	ENST00000381527.3:c.400C>T	p.Gln134Ter	p.Q134*	ENST00000381527	NM_001260.1	134	Cag/Tag																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28931751	28931751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	35	496	0	ENST00000282397.4:c.2188C>T	p.His730Tyr	p.H730Y	ENST00000282397	NM_002019.4	730	Cac/Tac																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435153	110435153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	30	300	0	ENST00000375856.3:c.3248C>T	p.Pro1083Leu	p.P1083L	ENST00000375856	NM_003749.2	1083	cCg/cTg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42005599	42005599	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	62	552	0	ENST00000219905.7:c.3335A>T	p.Asp1112Val	p.D1112V	ENST00000219905	NM_001164273.1	1112	gAt/gTt																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17942536	17942536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	44	301	0	ENST00000458235.1:c.2752C>T	p.Arg918Cys	p.R918C	ENST00000458235	NM_000215.3	918	Cgc/Tgc																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31024021	31024021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	65	414	0	ENST00000375687.4:c.3506C>A	p.Ser1169Tyr	p.S1169Y	ENST00000375687	NM_015338.5	1169	tCt/tAt																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24167454	24167454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	37	407	0	ENST00000263121.7:c.838G>A	p.Glu280Lys	p.E280K	ENST00000263121	NM_003073.3	280	Gag/Aag																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30035106	30035106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	25	417	0	ENST00000338641.4:c.268G>A	p.Glu90Lys	p.E90K	ENST00000338641	NM_000268.3	90	Gaa/Aaa																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41545855	41545855	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	80	519	0	ENST00000263253.7:c.2470C>T	p.Gln824Ter	p.Q824*	ENST00000263253	NM_001429.3	824	Caa/Taa																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060819	38060820	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGGA			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	83	566	0	ENST00000250448.2:c.1169_1170insTCCCG	p.Asp391ProfsTer51	p.D391Pfs*51	ENST00000250448	NM_004496.3	390	ggg/ggTCCCGg																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	226087	226087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	41	162	0	ENST00000264932.6:c.548del	p.Gly183AlafsTer43	p.G183Afs*43	ENST00000264932	NM_004168.2	182	aaG/aa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16262227	16262231	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTG	TCCTG	-			P-0003434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	28	73	0	ENST00000375759.3:c.9494_9498del	p.Pro3165ArgfsTer17	p.P3165Rfs*17	ENST00000375759	NM_015001.2	3164	ctTCCTGtc/cttc																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18439842	18439843	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			142	50	411	0	ENST00000266497.5:c.745dup	p.Cys249LeufsTer15	p.C249Lfs*15	ENST00000266497		247	tct/tcTt																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52441322	52441322	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014719-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			185	244	433	0	ENST00000460680.1:c.448del	p.Arg150AlafsTer37	p.R150Afs*37	ENST00000460680	NM_004656.3	150	Cgc/gc																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156846308	156846308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	52	461	0	ENST00000524377.1:c.1753delC	p.Leu585CysfsTer73	p.L585Cfs*73	ENST00000524377	NM_002529.3	583	cgC/cg																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	293	401	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	257	143	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	40	128	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	83	308	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	124	399	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	255	417	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																												NEWRECORD																																		
HIST1H1C	3006	MSKCC	GRCh37	6	26056588	26056590	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs751086925		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	88	159	0	ENST00000343677.2:c.67_69del	p.Lys23del	p.K23del	ENST00000343677	NM_005319.3	23	AAG/-																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53247039	53247039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	289	341	0	ENST00000375401.3:c.461G>A	p.Arg154His	p.R154H	ENST00000375401	NM_004187.3	154	cGc/cAc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	118	314	0	ENST00000261769.5:c.1565+1G>A		p.X522_splice	ENST00000261769	NM_004360.3	522																																													NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48573505	48573506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	342	448	0	ENST00000342988.3:c.94_95delAG	p.Ser32Ter	p.S32*	ENST00000342988	NM_005359.5	30	gGA/g																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41765459	41765459	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	152	379	0	ENST00000301178.4:c.2335T>C	p.Tyr779His	p.Y779H	ENST00000301178	NM_021913.4	779	Tat/Cat																																												NEWRECORD																																		
ARID2	196528	MSKCC	GRCh37	12	46287469	46287469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	270	359	0	ENST00000334344.6:c.5333del	p.Asn1778IlefsTer13	p.N1778Ifs*13	ENST00000334344	NM_152641.2	1776	ttA/tt																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49412913	49412913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	239	543	0	ENST00000418115.1:c.110C>T	p.Thr37Ile	p.T37I	ENST00000418115	NM_001664.2	37	aCa/aTa																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	231	352	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	213	584	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	195	379	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206648328	206648328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	107	384	0	ENST00000367120.3:c.349C>T	p.Arg117Cys	p.R117C	ENST00000367120	NM_014002.3	117	Cgc/Tgc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5214591	5214591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	139	471	1	ENST00000357368.4:c.4475G>A	p.Arg1492Gln	p.R1492Q	ENST00000357368	NM_002850.3	1492	cGg/cAg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32188854	32188854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	98	422	0	ENST00000375023.3:c.700C>T	p.Arg234Trp	p.R234W	ENST00000375023	NM_004557.3	234	Cgg/Tgg																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9780684	9780684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	123	428	0	ENST00000377346.4:c.1486C>T	p.Arg496Ter	p.R496*	ENST00000377346	NM_005026.3	496	Cga/Tga																																												NEWRECORD																																		
CDKN2C	0	MSKCC	GRCh37	1	51439586	51439586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	270	326	0	ENST00000262662.1:c.151G>A	p.Glu51Lys	p.E51K	ENST00000262662		51	Gag/Aag																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206658601	206658601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	187	484	0	ENST00000367120.3:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000367120	NM_014002.3	525	cGg/cAg																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25523049	25523049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	134	413	0	ENST00000264709.3:c.136C>T	p.Arg46Trp	p.R46W	ENST00000264709	NM_175629.2	46	Cgg/Tgg																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47693887	47693887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	303	459	1	ENST00000233146.2:c.1601G>A	p.Arg534His	p.R534H	ENST00000233146	NM_000251.2	534	cGt/cAt																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47709924	47709924	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	267	375	0	ENST00000233146.2:c.2641G>T	p.Glu881Ter	p.E881*	ENST00000233146	NM_000251.2	881	Gaa/Taa																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99170929	99170929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	194	439	1	ENST00000074304.5:c.1558G>A	p.Val520Met	p.V520M	ENST00000074304	NM_001134224.1	520	Gtg/Atg																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128036942	128036942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	163	376	0	ENST00000285398.2:c.1537C>A	p.Pro513Thr	p.P513T	ENST00000285398	NM_000122.1	513	Cct/Act																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662554	227662554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	84	345	1	ENST00000305123.5:c.901C>T	p.Arg301Cys	p.R301C	ENST00000305123	NM_005544.2	301	Cgc/Tgc																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49397700	49397700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	218	463	0	ENST00000418115.1:c.524C>T	p.Thr175Met	p.T175M	ENST00000418115	NM_001664.2	175	aCg/aTg																																												NEWRECORD																																		
RYBP	23429	MSKCC	GRCh37	3	72427588	72427588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	228	402	2	ENST00000477973.2:c.900G>A	p.Arg301His	p.R301H	ENST00000477973	NM_012234.5	301	cGt/cAt																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143003184	143003184	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	317	405	0	ENST00000262992.4:c.2642G>T	p.Arg881Ile	p.R881I	ENST00000262992	NM_001101669.1	881	aGa/aTa																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153332544	153332544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	373	436	0	ENST00000281708.4:c.412A>G	p.Thr138Ala	p.T138A	ENST00000281708	NM_033632.3	138	Aca/Gca																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187628547	187628547	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	387	509	0	ENST00000441802.2:c.2435T>C	p.Val812Ala	p.V812A	ENST00000441802	NM_005245.3	812	gTt/gCt																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1293458	1293458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	76	335	0	ENST00000310581.5:c.1543C>T	p.Arg515Trp	p.R515W	ENST00000310581	NM_198253.2	515	Cgg/Tgg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38991049	38991049	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	190	236	0	ENST00000357387.3:c.583+2T>C		p.X195_splice	ENST00000357387	NM_152756.3	195																																													NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131895051	131895051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	124	199	0	ENST00000265335.6:c.205G>A	p.Asp69Asn	p.D69N	ENST00000265335		69	Gat/Aat																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131923258	131923258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	148	174	0	ENST00000265335.6:c.761G>A	p.Arg254His	p.R254H	ENST00000265335		254	cGt/cAt																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149441394	149441394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	100	302	1	ENST00000286301.3:c.1645C>T	p.Arg549Cys	p.R549C	ENST00000286301	NM_005211.3	549	Cgc/Tgc																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149500865	149500865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	103	403	0	ENST00000261799.4:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000261799	NM_002609.3	789	Gca/Aca																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056284	26056284	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	205	327	0	ENST00000343677.2:c.373G>T	p.Gly125Ter	p.G125*	ENST00000343677	NM_005319.3	125	Gga/Tga																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117715871	117715871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	283	348	0	ENST00000368508.3:c.887C>T	p.Ser296Phe	p.S296F	ENST00000368508	NM_002944.2	296	tCc/tTc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527835	157527835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	235	392	1	ENST00000346085.5:c.5560G>T	p.Gly1854Cys	p.G1854C	ENST00000346085	NM_020732.3	1854	Ggt/Tgt																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13940458	13940458	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	198	258	0	ENST00000405192.2:c.1048C>T	p.Arg350Ter	p.R350*	ENST00000405192	NM_001163147.1	350	Cga/Tga																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508556	106508556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	108	173	1	ENST00000359195.3:c.550C>T	p.Arg184Cys	p.R184C	ENST00000359195	NM_002649.2	184	Cgc/Tgc																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5081749	5081749	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	230	334	0	ENST00000381652.3:c.2459A>T	p.Asp820Val	p.D820V	ENST00000381652	NM_004972.3	820	gAc/gTc																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93606431	93606431	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	122	320	0	ENST00000375746.1:c.251G>C	p.Ser84Thr	p.S84T	ENST00000375746	NM_001174167.1	84	aGc/aCc																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135797289	135797289	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	363	407	0	ENST00000298552.3:c.580A>T	p.Met194Leu	p.M194L	ENST00000298552	NM_001162426.1	194	Atg/Ttg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70406048	70406048	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199726871		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	250	400	0	ENST00000373644.4:c.3562G>A	p.Asp1188Asn	p.D1188N	ENST00000373644	NM_030625.2	1188	Gac/Aac																																												NEWRECORD																																		
FGF19	0	MSKCC	GRCh37	11	69518512	69518512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	163	288	0	ENST00000294312.3:c.133C>T	p.Arg45Trp	p.R45W	ENST00000294312	NM_005117.2	45	Cgg/Tgg																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56480404	56480404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	214	536	0	ENST00000267101.3:c.511G>T	p.Asp171Tyr	p.D171Y	ENST00000267101	NM_001982.3	171	Gat/Tat																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112926260	112926260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	229	427	1	ENST00000351677.2:c.1393C>T	p.Arg465Trp	p.R465W	ENST00000351677	NM_002834.3	465	Cgg/Tgg																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99434683	99434683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	223	405	0	ENST00000268035.6:c.770C>T	p.Ala257Val	p.A257V	ENST00000268035	NM_000875.3	257	gCc/gTc																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81888138	81888138	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	246	606	0	ENST00000359376.3:c.283T>C	p.Cys95Arg	p.C95R	ENST00000359376	NM_002661.3	95	Tgc/Cgc																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81969881	81969881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	272	561	0	ENST00000359376.3:c.2950C>T	p.Arg984Cys	p.R984C	ENST00000359376	NM_002661.3	984	Cgc/Tgc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	92	359	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56439906	56439906	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	160	272	0	ENST00000407977.2:c.686C>T	p.Pro229Leu	p.P229L	ENST00000407977		229	cCg/cTg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78854225	78854225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	168	428	2	ENST00000306801.3:c.1520C>T	p.Ala507Val	p.A507V	ENST00000306801	NM_020761.2	507	gCg/gTg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78867533	78867533	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185118480		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	148	457	0	ENST00000306801.3:c.2269G>A	p.Gly757Arg	p.G757R	ENST00000306801	NM_020761.2	757	Gga/Aga																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78919514	78919514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149834841		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	149	435	0	ENST00000306801.3:c.3073G>A	p.Val1025Ile	p.V1025I	ENST00000306801	NM_020761.2	1025	Gtc/Atc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2210501	2210501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	137	373	2	ENST00000398665.3:c.1108G>A	p.Ala370Thr	p.A370T	ENST00000398665	NM_032482.2	370	Gcc/Acc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11145624	11145624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	160	354	0	ENST00000344626.4:c.3986G>A	p.Arg1329His	p.R1329H	ENST00000344626	NM_003072.3	1329	cGc/cAc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15298730	15298730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	53	427	0	ENST00000263388.2:c.1568T>C	p.Val523Ala	p.V523A	ENST00000263388	NM_000435.2	523	gTg/gCg																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15365052	15365052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	135	409	1	ENST00000263377.2:c.2069C>T	p.Ala690Val	p.A690V	ENST00000263377	NM_058243.2	690	gCc/gTc																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41737136	41737136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	185	499	0	ENST00000301178.4:c.716C>T	p.Thr239Met	p.T239M	ENST00000301178	NM_021913.4	239	aCg/aTg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42793416	42793416	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	119	319	0	ENST00000575354.2:c.1218G>T	p.Glu406Asp	p.E406D	ENST00000575354	NM_015125.3	406	gaG/gaT																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42797780	42797780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	98	398	1	ENST00000575354.2:c.3832G>A	p.Val1278Ile	p.V1278I	ENST00000575354	NM_015125.3	1278	Gtc/Atc																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54945355	54945355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	162	277	0	ENST00000312783.6:c.1071G>T	p.Arg357Ser	p.R357S	ENST00000312783	NM_198436.1	357	agG/agT																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29121241	29121241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	463	517	0	ENST00000328354.6:c.434G>A	p.Arg145Gln	p.R145Q	ENST00000328354	NM_007194.3	145	cGg/cAg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41566519	41566519	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1168	250	549	0	ENST00000263253.7:c.4396T>C	p.Trp1466Arg	p.W1466R	ENST00000263253	NM_001429.3	1466	Tgg/Cgg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70355041	70355041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	203	300	0	ENST00000374080.3:c.4963G>T	p.Gly1655Cys	p.G1655C	ENST00000374080		1655	Ggc/Tgc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937084	76937084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	432	283	0	ENST00000373344.5:c.3664G>A	p.Asp1222Asn	p.D1222N	ENST00000373344	NM_000489.3	1222	Gat/Aat																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139401385	139401385	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	124	269	2	ENST00000277541.6:c.3684del	p.Val1229LeufsTer216	p.V1229Lfs*216	ENST00000277541	NM_017617.3	1228	ccC/cc																																												NEWRECORD																																		
BCL10	8915	MSKCC	GRCh37	1	85733513	85733513	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs764922765		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	392	617	4	ENST00000370580.1:c.499del	p.Ser167LeufsTer6	p.S167Lfs*6	ENST00000370580	NM_003921.4	167	Tct/ct																																												NEWRECORD																																		
FGF19	0	MSKCC	GRCh37	11	69518488	69518488	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	175	259	0	ENST00000294312.3:c.157del	p.His53ThrfsTer93	p.H53Tfs*93	ENST00000294312	NM_005117.2	53	Cac/ac																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426729	49426730	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	27	150	0	ENST00000301067.7:c.11756_11758dup	p.Gln3919dup	p.Q3919dup	ENST00000301067	NM_003482.3	3919	cta/cAGCta																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133760024	133760024	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	167	460	3	ENST00000318560.5:c.2352delC	p.Arg785GlyfsTer3	p.R785Gfs*3	ENST00000318560	NM_005157.4	783	Ccc/cc																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26029193	26029195	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	226	343	0	ENST00000435504.4:c.155_157del	p.Pro52del	p.P52del	ENST00000435504		52	cCTCtt/ctt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100331	27100331	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	185	496	0	ENST00000324856.7:c.4046del	p.Pro1349LeufsTer132	p.P1349Lfs*132	ENST00000324856	NM_006015.4	1348	aCc/ac																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47702391	47702399	+	inframe_deletion	In_Frame_Del	DEL	ATGTTCCAC	ATGTTCCAC	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	111	282	0	ENST00000233146.2:c.1989_1997del	p.Met663_His665del	p.M663_H665del	ENST00000233146	NM_000251.2	663	ATGTTCCAC/-																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29091793	29091793	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	159	287	0	ENST00000328354.6:c.1164del	p.Thr389ProfsTer25	p.T389Pfs*25	ENST00000328354	NM_007194.3	388	ccC/cc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139409036	139409036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	106	524	0	ENST00000277541.6:c.2133delC	p.Thr712ProfsTer60	p.T712Pfs*60	ENST00000277541	NM_017617.3	711	ccC/cc																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149802	202149805	+	frameshift_variant	Frame_Shift_Del	DEL	TTTA	TTTA	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	169	339	0	ENST00000358485.4:c.1245_1248del	p.Ile416ArgfsTer24	p.I416Rfs*24	ENST00000358485	NM_001080125.1	415	TTTAtt/tt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49445374	49445375	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	94	379	0	ENST00000301067.7:c.2091dup	p.Thr698HisfsTer6	p.T698Hfs*6	ENST00000301067	NM_003482.3	697	-/C																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101259	27101259	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	150	428	0	ENST00000324856.7:c.4541delC	p.Thr1514ArgfsTer13	p.T1514Rfs*13	ENST00000324856	NM_006015.4	1514	aCg/ag																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007825	45007825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	219	399	0	ENST00000558401.1:c.276del	p.Thr93LeufsTer10	p.T93Lfs*10	ENST00000558401	NM_004048.2	91	aCc/ac																																												NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1328	175	589	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88420202	88420202	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	194	429	0	ENST00000360948.2:c.2484del	p.Lys829ArgfsTer18	p.K829Rfs*18	ENST00000360948	NM_001012338.2	828	ggG/gg																																												NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3781901	3781903	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-	rs751071525		P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	128	459	0	ENST00000262367.5:c.4764_4766del	p.Lys1588del	p.K1588del	ENST00000262367	NM_004380.2	1588	aaGAAc/aac																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46123837	46123837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	222	256	0	ENST00000334344.6:c.109delA	p.Ile37SerfsTer21	p.I37Sfs*21	ENST00000334344	NM_152641.2	35	Aaa/aa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937419	76937421	+	inframe_deletion	In_Frame_Del	DEL	GAT	GAT	-			P-0005823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	342	232	0	ENST00000373344.5:c.3327_3329del	p.Ser1110del	p.S1110del	ENST00000373344	NM_000489.3	1109	tcATCt/tct																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16265908	16265908	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	127	461	0	ENST00000375759.3:c.10981A>T	p.Ile3661Phe	p.I3661F	ENST00000375759	NM_015001.2	3661	Att/Ttt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	109	256	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	66	245	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	72	202	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	413	467	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89685288	89685289	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	166	194	0	ENST00000371953.3:c.188dupA	p.Asn63LysfsTer11	p.N63Kfs*11	ENST00000371953	NM_000314.4	61	-/A																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	162	206	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	176	352	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123200033	123200033	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	115	261	0	ENST00000218089.9:c.2105A>G	p.Asp702Gly	p.D702G	ENST00000218089	NM_001042749.1	702	gAc/gGc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175880	112175880	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	247	372	0	ENST00000257430.4:c.4592delA	p.Asn1531MetfsTer34	p.N1531Mfs*34	ENST00000257430	NM_000038.5	1530	gAa/ga																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0003515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	69	169	0	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1646359	1646359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	284	462	0	ENST00000344749.5:c.140G>C	p.Gly47Ala	p.G47A	ENST00000344749	NM_001136139.2	47	gGt/gCt																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073928	8073928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	79	1133	2	ENST00000377482.5:c.731G>A	p.Arg244Gln	p.R244Q	ENST00000377482	NM_018948.3	244	cGa/cAa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16254608	16254608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	52	656	1	ENST00000375759.3:c.1873G>A	p.Asp625Asn	p.D625N	ENST00000375759	NM_015001.2	625	Gac/Aac																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27059183	27059183	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	72	710	0	ENST00000324856.7:c.1820C>A	p.Ser607Ter	p.S607*	ENST00000324856	NM_006015.4	607	tCa/tAa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	29	456	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																												NEWRECORD																																		
STK40	0	MSKCC	GRCh37	1	36807378	36807378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	33	452	1	ENST00000373129.3:c.1286C>T	p.Ala429Val	p.A429V	ENST00000373129	NM_032017.1	429	gCg/gTg																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43806095	43806095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	68	688	1	ENST00000372470.3:c.891G>T	p.Lys297Asn	p.K297N	ENST00000372470	NM_005373.2	297	aaG/aaT																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72163760	72163760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	67	1166	0	ENST00000357731.5:c.598G>A	p.Glu200Lys	p.E200K	ENST00000357731	NM_173808.2	200	Gaa/Aaa																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162740098	162740098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	24	368	0	ENST00000367921.3:c.1300C>T	p.Arg434Trp	p.R434W	ENST00000367921	NM_006182.2	434	Cgg/Tgg																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204518460	204518460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	40	513	1	ENST00000367182.3:c.1123G>T	p.Asp375Tyr	p.D375Y	ENST00000367182	NM_001278516.1	375	Gat/Tat																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25972866	25972866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	57	622	0	ENST00000435504.4:c.1559C>A	p.Ser520Tyr	p.S520Y	ENST00000435504		520	tCt/tAt																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30143482	30143482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	17	160	0	ENST00000389048.3:c.44C>A	p.Ser15Tyr	p.S15Y	ENST00000389048	NM_004304.4	15	tCc/tAc																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47641516	47641516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	42	603	0	ENST00000233146.2:c.901A>G	p.Lys301Glu	p.K301E	ENST00000233146	NM_000251.2	301	Aaa/Gaa																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47707951	47707951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	35	510	0	ENST00000233146.2:c.2575G>T	p.Glu859Ter	p.E859*	ENST00000233146	NM_000251.2	859	Gaa/Taa																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48026896	48026896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	53	577	0	ENST00000234420.5:c.1774G>T	p.Val592Leu	p.V592L	ENST00000234420	NM_000179.2	592	Gta/Tta																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48027541	48027541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	29	327	1	ENST00000234420.5:c.2419G>A	p.Glu807Lys	p.E807K	ENST00000234420	NM_000179.2	807	Gaa/Aaa																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61118941	61118941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	60	501	0	ENST00000295025.8:c.134G>A	p.Arg45Gln	p.R45Q	ENST00000295025	NM_002908.2	45	cGa/cAa																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158630638	158630638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	61	912	2	ENST00000263640.3:c.605G>T	p.Arg202Ile	p.R202I	ENST00000263640	NM_001105.4	202	aGa/aTa																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	66	541	2	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113347	209113347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	51	560	0	ENST00000345146.2:c.160G>A	p.Asp54Asn	p.D54N	ENST00000345146	NM_005896.2	54	Gac/Aac																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212288964	212288964	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	42	596	0	ENST00000342788.4:c.2782G>T	p.Glu928Ter	p.E928*	ENST00000342788	NM_005235.2	928	Gaa/Taa																																												NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215645381	215645381	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587780014		P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	51	886	2	ENST00000260947.4:c.1217G>A	p.Arg406Gln	p.R406Q	ENST00000260947	NM_000465.2	406	cGa/cAa																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225379410	225379410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	43	625	0	ENST00000264414.4:c.458G>A	p.Arg153His	p.R153H	ENST00000264414	NM_003590.4	153	cGt/cAt																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47058740	47058740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	28	304	1	ENST00000409792.3:c.7538C>T	p.Thr2513Ile	p.T2513I	ENST00000409792	NM_014159.6	2513	aCt/aTt																																												NEWRECORD																																		
RYBP	0	MSKCC	GRCh37	3	72427709	72427709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	59	455	0	ENST00000477973.2:c.779G>T	p.Asp261Tyr	p.D261Y	ENST00000477973	NM_012234.5	261	Gac/Tac																																												NEWRECORD																																		
RYBP	0	MSKCC	GRCh37	3	72427738	72427738	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	59	369	0	ENST00000477973.2:c.750C>A	p.Thr251Asn	p.T251N	ENST00000477973	NM_012234.5	251	aCt/aAt																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119631610	119631610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	58	704	1	ENST00000316626.5:c.656C>A	p.Ser219Tyr	p.S219Y	ENST00000316626		219	tCt/tAt																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119634961	119634961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	32	535	0	ENST00000316626.5:c.538C>T	p.Arg180Trp	p.R180W	ENST00000316626		180	Cgg/Tgg																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134898711	134898711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	59	671	2	ENST00000398015.3:c.1769G>T	p.Gly590Val	p.G590V	ENST00000398015	NM_004441.4	590	gGg/gTg																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142272680	142272680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	55	704	0	ENST00000350721.4:c.2519G>T	p.Gly840Val	p.G840V	ENST00000350721	NM_001184.3	840	gGa/gTa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1293	87	1163	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	86	1156	2	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185169115	185169115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	77	846	0	ENST00000265026.3:c.1210C>T	p.Leu404Phe	p.L404F	ENST00000265026	NM_004721.4	404	Ctc/Ttc																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186505640	186505640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	69	874	0	ENST00000323963.5:c.1048C>A	p.Leu350Ile	p.L350I	ENST00000323963		350	Cta/Ata																																												NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187449600	187449600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	36	439	0	ENST00000232014.4:c.280C>T	p.Arg94Trp	p.R94W	ENST00000232014	NM_001130845.1	94	Cgg/Tgg																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55603381	55603381	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	45	686	0	ENST00000288135.5:c.2737A>C	p.Lys913Gln	p.K913Q	ENST00000288135	NM_000222.2	913	Aaa/Caa																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143029269	143029269	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	32	376	0	ENST00000262992.4:c.2351T>G	p.Phe784Cys	p.F784C	ENST00000262992	NM_001101669.1	784	tTt/tGt																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153251946	153251946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	51	702	1	ENST00000281708.4:c.1060G>T	p.Ala354Ser	p.A354S	ENST00000281708	NM_033632.3	354	Gca/Tca																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153332699	153332699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	63	783	1	ENST00000281708.4:c.257C>T	p.Ser86Leu	p.S86L	ENST00000281708	NM_033632.3	86	tCg/tTg																																												NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187539727	187539727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	41	584	0	ENST00000441802.2:c.8013C>A	p.Phe2671Leu	p.F2671L	ENST00000441802	NM_005245.3	2671	ttC/ttA																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542861	187542861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	37	476	2	ENST00000441802.2:c.4879C>T	p.Arg1627Ter	p.R1627*	ENST00000441802	NM_005245.3	1627	Cga/Tga																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630763	187630763	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	56	816	0	ENST00000441802.2:c.219A>C	p.Lys73Asn	p.K73N	ENST00000441802	NM_005245.3	73	aaA/aaC																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56189383	56189383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	74	717	0	ENST00000399503.3:c.4415C>T	p.Ser1472Leu	p.S1472L	ENST00000399503	NM_005921.1	1472	tCg/tTg																																												NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57750454	57750454	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	55	642	0	ENST00000274289.3:c.2014C>T	p.Arg672Ter	p.R672*	ENST00000274289	NM_006622.3	672	Cga/Tga																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57752839	57752839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	35	351	1	ENST00000274289.3:c.1089C>A	p.Phe363Leu	p.F363L	ENST00000274289	NM_006622.3	363	ttC/ttA																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86645152	86645152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	27	364	0	ENST00000274376.6:c.1224G>T	p.Gln408His	p.Q408H	ENST00000274376	NM_002890.2	408	caG/caT																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	32	413	0	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86672371	86672371	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	38	368	0	ENST00000274376.6:c.2173G>T	p.Glu725Ter	p.E725*	ENST00000274376	NM_002890.2	725	Gaa/Taa																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131931374	131931374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	65	578	0	ENST00000265335.6:c.2079G>T	p.Glu693Asp	p.E693D	ENST00000265335		693	gaG/gaT																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149500867	149500867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	35	411	0	ENST00000261799.4:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000261799	NM_002609.3	788	cGa/cAa																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149501508	149501508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	51	655	0	ENST00000261799.4:c.2279A>G	p.Asp760Gly	p.D760G	ENST00000261799	NM_002609.3	760	gAc/gGc																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176562387	176562387	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	44	384	0	ENST00000439151.2:c.283G>T	p.Glu95Ter	p.E95*	ENST00000439151	NM_022455.4	95	Gaa/Taa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176675248	176675248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201483724		P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	45	666	0	ENST00000439151.2:c.4564G>A	p.Asp1522Asn	p.D1522N	ENST00000439151	NM_022455.4	1522	Gat/Aat																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180036019	180036019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	52	680	3	ENST00000261937.6:c.3842C>T	p.Ser1281Leu	p.S1281L	ENST00000261937	NM_182925.4	1281	tCg/tTg																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20488443	20488443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	55	720	2	ENST00000346618.3:c.1099G>T	p.Asp367Tyr	p.D367Y	ENST00000346618	NM_001949.4	367	Gac/Tac																																												NEWRECORD																																		
HIST1H3E	0	MSKCC	GRCh37	6	26225411	26225411	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1584	103	1263	0	ENST00000360408.1:c.29A>C	p.Lys10Thr	p.K10T	ENST00000360408	NM_003532.2	10	aAa/aCa																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30672233	30672233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	73	895	0	ENST00000376406.3:c.4727C>A	p.Pro1576His	p.P1576H	ENST00000376406	NM_014641.2	1576	cCt/cAt																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112024169	112024169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	69	990	3	ENST00000368678.4:c.616C>T	p.Arg206Cys	p.R206C	ENST00000368678		206	Cgc/Tgc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117710657	117710657	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	51	596	1	ENST00000368508.3:c.1615G>T	p.Glu539Ter	p.E539*	ENST00000368508	NM_002944.2	539	Gaa/Taa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117746794	117746794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	55	613	0	ENST00000368508.3:c.26C>T	p.Pro9Leu	p.P9L	ENST00000368508	NM_002944.2	9	cCg/cTg																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138196096	138196096	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	81	609	0	ENST00000237289.4:c.410A>C	p.Asn137Thr	p.N137T	ENST00000237289	NM_001270507.1	137	aAc/aCc																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149982971	149982971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	34	513	0	ENST00000253339.5:c.3287C>A	p.Pro1096His	p.P1096H	ENST00000253339		1096	cCt/cAt																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150004349	150004349	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	53	831	1	ENST00000253339.5:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000253339		626	Cga/Tga																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157150392	157150392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	62	701	0	ENST00000346085.5:c.1574G>A	p.Arg525Lys	p.R525K	ENST00000346085	NM_020732.3	525	aGa/aAa																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527458	157527458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	51	532	0	ENST00000346085.5:c.5183C>A	p.Ser1728Tyr	p.S1728Y	ENST00000346085	NM_020732.3	1728	tCt/tAt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55211170	55211170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	44	426	0	ENST00000275493.2:c.413G>T	p.Arg138Ile	p.R138I	ENST00000275493	NM_005228.3	138	aGa/aTa																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140487360	140487360	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs397507472		P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	75	896	1	ENST00000288602.6:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000288602	NM_004333.4	389	Cgt/Tgt																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148511220	148511220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	34	394	1	ENST00000320356.2:c.1682G>A	p.Arg561His	p.R561H	ENST00000320356	NM_004456.4	561	cGc/cAc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151851403	151851403	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	51	758	0	ENST00000262189.6:c.12088G>T	p.Glu4030Ter	p.E4030*	ENST00000262189	NM_170606.2	4030	Gaa/Taa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874383	151874383	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	36	600	0	ENST00000262189.6:c.8155A>C	p.Asn2719His	p.N2719H	ENST00000262189	NM_170606.2	2719	Aac/Cac																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152055755	152055755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	59	538	0	ENST00000262189.6:c.167G>A	p.Arg56Gln	p.R56Q	ENST00000262189	NM_170606.2	56	cGa/cAa																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55370965	55370965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	37	415	0	ENST00000297316.4:c.267G>T	p.Gln89His	p.Q89H	ENST00000297316	NM_022454.3	89	caG/caT																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5029830	5029830	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	49	505	0	ENST00000381652.3:c.274G>T	p.Glu92Ter	p.E92*	ENST00000381652	NM_004972.3	92	Gaa/Taa																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87570332	87570332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	50	718	0	ENST00000277120.3:c.2072G>A	p.Arg691His	p.R691H	ENST00000277120		691	cGc/cAc																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135778101	135778101	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	46	636	0	ENST00000298552.3:c.2282A>G	p.Tyr761Cys	p.Y761C	ENST00000298552	NM_001162426.1	761	tAc/tGc																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88649927	88649927	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	37	418	0	ENST00000372037.3:c.176T>G	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	59	tTa/tGa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	19	158	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692856	89692856	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	14	152	0	ENST00000371953.3:c.340G>T	p.Glu114Ter	p.E114*	ENST00000371953	NM_000314.4	114	Gaa/Taa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720862	89720862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	29	291	0	ENST00000371953.3:c.1013C>A	p.Ser338Tyr	p.S338Y	ENST00000371953	NM_000314.4	338	tCt/tAt																																												NEWRECORD																																		
SUFU	0	MSKCC	GRCh37	10	104386931	104386931	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	43	413	0	ENST00000369902.3:c.1297-1G>T		p.X433_splice	ENST00000369902	NM_016169.3	433																																													NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114912150	114912150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	88	1031	4	ENST00000543371.1:c.1220G>A	p.Arg407Gln	p.R407Q	ENST00000543371	NM_001198531.1	407	cGa/cAa																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2154868	2154868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	34	593	0	ENST00000434045.2:c.353G>A	p.Arg118His	p.R118H	ENST00000434045	NM_001127598.1	118	cGc/cAc																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64132774	64132774	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	46	599	0	ENST00000334205.4:c.908G>A	p.Gly303Asp	p.G303D	ENST00000334205	NM_003942.2	303	gGc/gAc																																												NEWRECORD																																		
EED	0	MSKCC	GRCh37	11	85968608	85968608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	47	582	2	ENST00000263360.6:c.604G>T	p.Asp202Tyr	p.D202Y	ENST00000263360	NM_003797.3	202	Gat/Tat																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94219163	94219163	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	46	420	0	ENST00000323929.3:c.241A>C	p.Lys81Gln	p.K81Q	ENST00000323929	NM_005591.3	81	Aaa/Caa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	34	617	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																												NEWRECORD																																		
CHEK1	0	MSKCC	GRCh37	11	125503180	125503180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	38	552	0	ENST00000428830.2:c.547G>T	p.Glu183Ter	p.E183*	ENST00000428830	NM_001114121.2	183	Gaa/Taa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18491472	18491472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	25	390	0	ENST00000266497.5:c.1385G>T	p.Arg462Ile	p.R462I	ENST00000266497		462	aGa/aTa																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56478786	56478786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	58	499	0	ENST00000267101.3:c.242G>A	p.Arg81Gln	p.R81Q	ENST00000267101	NM_001982.3	81	cGa/cAa																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56478965	56478965	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	72	583	3	ENST00000267101.3:c.421G>T	p.Glu141Ter	p.E141*	ENST00000267101	NM_001982.3	141	Gag/Tag																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102811604	102811604	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	71	943	0	ENST00000307046.8:c.580G>T	p.Gly194Ter	p.G194*	ENST00000307046	NM_001111285.1	194	Gga/Tga																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112891035	112891035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	31	303	0	ENST00000351677.2:c.369G>T	p.Glu123Asp	p.E123D	ENST00000351677	NM_002834.3	123	gaG/gaT																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112939991	112939991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	69	569	0	ENST00000351677.2:c.1643C>T	p.Ser548Phe	p.S548F	ENST00000351677	NM_002834.3	548	tCt/tTt																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133209337	133209337	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs115452769		P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	37	630	3	ENST00000320574.5:c.6049C>T	p.Arg2017Cys	p.R2017C	ENST00000320574	NM_006231.2	2017	Cgc/Tgc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133220557	133220557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	29	314	0	ENST00000320574.5:c.4156C>T	p.Arg1386Trp	p.R1386W	ENST00000320574	NM_006231.2	1386	Cgg/Tgg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133226361	133226361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	39	806	0	ENST00000320574.5:c.3697C>T	p.Arg1233Ter	p.R1233*	ENST00000320574	NM_006231.2	1233	Cga/Tga																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	50	559	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21563383	21563383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	84	898	0	ENST00000382592.4:c.536C>T	p.Ser179Leu	p.S179L	ENST00000382592	NM_014572.2	179	tCg/tTg																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26974661	26974661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	46	603	1	ENST00000381527.3:c.1005C>A	p.Phe335Leu	p.F335L	ENST00000381527	NM_001260.1	335	ttC/ttA																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28589756	28589756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	43	669	2	ENST00000241453.7:c.2624G>T	p.Gly875Val	p.G875V	ENST00000241453	NM_004119.2	875	gGa/gTa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28964160	28964160	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	29	502	0	ENST00000282397.4:c.1742A>C	p.Lys581Thr	p.K581T	ENST00000282397	NM_002019.4	581	aAg/aCg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28964184	28964184	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	35	452	0	ENST00000282397.4:c.1718T>C	p.Leu573Pro	p.L573P	ENST00000282397	NM_002019.4	573	cTg/cCg																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32911088	32911088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	68	1193	1	ENST00000380152.3:c.2596G>A	p.Glu866Lys	p.E866K	ENST00000380152		866	Gaa/Aaa																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73336269	73336269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	19	210	0	ENST00000377767.4:c.2134G>A	p.Glu712Lys	p.E712K	ENST00000377767	NM_014953.3	712	Gaa/Aaa																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103520501	103520501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	55	607	0	ENST00000355739.4:c.2572C>A	p.Leu858Ile	p.L858I	ENST00000355739	NM_000123.3	858	Ctt/Att																																												NEWRECORD																																		
RAD51B	0	MSKCC	GRCh37	14	68301849	68301849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	70	629	0	ENST00000487270.1:c.251C>A	p.Ser84Tyr	p.S84Y	ENST00000487270	NM_133509.3	84	tCt/tAt																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81609532	81609532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	50	597	0	ENST00000298171.2:c.1130C>T	p.Thr377Ile	p.T377I	ENST00000298171	NM_000369.2	377	aCt/aTt																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95599662	95599662	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	44	543	0	ENST00000343455.3:c.134G>T	p.Arg45Ile	p.R45I	ENST00000343455	NM_177438.2	45	aGa/aTa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042400	42042400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1257	96	1332	1	ENST00000219905.7:c.6595G>A	p.Glu2199Lys	p.E2199K	ENST00000219905	NM_001164273.1	2199	Gag/Aag																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42046766	42046766	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	63	814	0	ENST00000219905.7:c.7139+1G>A		p.X2380_splice	ENST00000219905	NM_001164273.1	2380																																													NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007779	45007779	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	43	523	0	ENST00000558401.1:c.226T>G	p.Phe76Val	p.F76V	ENST00000558401	NM_004048.2	76	Ttc/Gtc																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91352484	91352484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	30	272	0	ENST00000355112.3:c.3869C>T	p.Ser1290Leu	p.S1290L	ENST00000355112	NM_000057.2	1290	tCg/tTg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2129426	2129426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	33	349	0	ENST00000219476.3:c.3281C>T	p.Ser1094Leu	p.S1094L	ENST00000219476	NM_000548.3	1094	tCg/tTg																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2223241	2223241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	50	476	1	ENST00000326181.6:c.853G>A	p.Glu285Lys	p.E285K	ENST00000326181	NM_032271.2	285	Gag/Aag																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857834	9857834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	75	892	1	ENST00000330684.3:c.3567G>T	p.Lys1189Asn	p.K1189N	ENST00000330684	NM_001134407.1	1189	aaG/aaT																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9892164	9892164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	56	677	3	ENST00000330684.3:c.2326G>A	p.Asp776Asn	p.D776N	ENST00000330684	NM_001134407.1	776	Gac/Aac																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23619257	23619257	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	75	674	0	ENST00000261584.4:c.3278T>G	p.Ile1093Ser	p.I1093S	ENST00000261584	NM_024675.3	1093	aTt/aGt																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23646545	23646545	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	23	313	0	ENST00000261584.4:c.1322A>C	p.Lys441Thr	p.K441T	ENST00000261584	NM_024675.3	441	aAa/aCa																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30133282	30133282	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	74	842	0	ENST00000263025.4:c.216G>T	p.Lys72Asn	p.K72N	ENST00000263025	NM_002746.2	72	aaG/aaT																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67650710	67650710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	73	673	0	ENST00000264010.4:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000264010	NM_006565.3	339	Cgg/Tgg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68855985	68855985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	46	701	1	ENST00000261769.5:c.1793G>A	p.Arg598Gln	p.R598Q	ENST00000261769	NM_004360.3	598	cGa/cAa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72827732	72827732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	72	914	2	ENST00000268489.5:c.8849G>A	p.Arg2950His	p.R2950H	ENST00000268489	NM_006885.3	2950	cGc/cAc																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81939065	81939065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	59	931	1	ENST00000359376.3:c.1420G>A	p.Glu474Lys	p.E474K	ENST00000359376	NM_002661.3	474	Gaa/Aaa																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89348352	89348352	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	69	1097	0	ENST00000301030.4:c.4598A>C	p.Lys1533Thr	p.K1533T	ENST00000301030	NM_001256183.1	1533	aAa/aCa																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89349860	89349860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	85	1174	0	ENST00000301030.4:c.3090G>T	p.Glu1030Asp	p.E1030D	ENST00000301030	NM_001256183.1	1030	gaG/gaT																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7976107	7976107	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	59	639	1	ENST00000319144.4:c.2088G>T	p.Glu696Asp	p.E696D	ENST00000319144	NM_001139.2	696	gaG/gaT																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16022796	16022796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	31	472	0	ENST00000268712.3:c.1856C>A	p.Ser619Tyr	p.S619Y	ENST00000268712	NM_006311.3	619	tCt/tAt																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16042433	16042433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	33	631	3	ENST00000268712.3:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000268712	NM_006311.3	414	cGa/cAa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16089995	16089995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150859090		P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	22	267	0	ENST00000268712.3:c.115G>A	p.Ala39Thr	p.A39T	ENST00000268712	NM_006311.3	39	Gca/Aca																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17118616	17118616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112980409		P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	44	560	0	ENST00000285071.4:c.1315G>A	p.Val439Met	p.V439M	ENST00000285071	NM_144997.5	439	Gtg/Atg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29556403	29556403	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	36	440	3	ENST00000358273.4:c.2770G>T	p.Glu924Ter	p.E924*	ENST00000358273	NM_001042492.2	924	Gaa/Taa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29683508	29683508	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	28	443	0	ENST00000358273.4:c.7646C>A	p.Ser2549Ter	p.S2549*	ENST00000358273	NM_001042492.2	2549	tCa/tAa																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740668	58740668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	73	1176	1	ENST00000305921.3:c.1573G>T	p.Glu525Ter	p.E525*	ENST00000305921	NM_003620.3	525	Gaa/Taa																																												NEWRECORD																																		
PRKAR1A	0	MSKCC	GRCh37	17	66511714	66511714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	42	348	0	ENST00000358598.2:c.174G>T	p.Glu58Asp	p.E58D	ENST00000358598	NM_212471.2	58	gaG/gaT																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5229620	5229620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	31	118	0	ENST00000357368.4:c.2231C>T	p.Pro744Leu	p.P744L	ENST00000357368	NM_002850.3	744	cCc/cTc																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10291167	10291167	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	51	729	1	ENST00000340748.4:c.304G>T	p.Glu102Ter	p.E102*	ENST00000340748		102	Gaa/Taa																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10291528	10291528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	63	639	3	ENST00000340748.4:c.151G>A	p.Glu51Lys	p.E51K	ENST00000340748		51	Gaa/Aaa																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17950294	17950294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	51	568	0	ENST00000458235.1:c.1433G>T	p.Arg478Ile	p.R478I	ENST00000458235	NM_000215.3	478	aGa/aTa																																												NEWRECORD																																		
MEF2B	0	MSKCC	GRCh37	19	19257874	19257874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	43	587	2	ENST00000162023.5:c.512G>A	p.Arg171Gln	p.R171Q	ENST00000162023		171	cGa/cAa																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50906786	50906786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	92	1060	1	ENST00000440232.2:c.1174G>A	p.Val392Met	p.V392M	ENST00000440232	NM_002691.3	392	Gtg/Atg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52729224	52729224	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	56	545	2	ENST00000322088.6:c.1760C>A	p.Ser587Tyr	p.S587Y	ENST00000322088	NM_014225.5	587	tCt/tAt																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31021439	31021439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	36	426	0	ENST00000375687.4:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000375687	NM_015338.5	480	Gaa/Aaa																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31023957	31023957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139435094		P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	37	484	0	ENST00000375687.4:c.3442C>T	p.Arg1148Cys	p.R1148C	ENST00000375687	NM_015338.5	1148	Cgc/Tgc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40944523	40944523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	30	632	1	ENST00000373198.4:c.1979C>A	p.Ser660Tyr	p.S660Y	ENST00000373198	NM_133170.3	660	tCt/tAt																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41306588	41306588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	44	666	0	ENST00000373198.4:c.1071G>T	p.Glu357Asp	p.E357D	ENST00000373198	NM_133170.3	357	gaG/gaT																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46268449	46268449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	63	986	0	ENST00000371998.3:c.2836A>G	p.Asn946Asp	p.N946D	ENST00000371998		946	Aat/Gat																																												NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	56	663	1	ENST00000300305.3:c.611G>A	p.Arg204Gln	p.R204Q	ENST00000300305		204	cGa/cAa																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24134006	24134006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	53	487	0	ENST00000263121.7:c.157C>T	p.Arg53Ter	p.R53*	ENST00000263121	NM_003073.3	53	Cga/Tga																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24143241	24143241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	50	678	0	ENST00000263121.7:c.473G>A	p.Arg158Gln	p.R158Q	ENST00000263121	NM_003073.3	158	cGa/cAa																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39913563	39913563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	55	763	0	ENST00000378444.4:c.4765C>T	p.Arg1589Cys	p.R1589C	ENST00000378444	NM_001123385.1	1589	Cgc/Tgc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47044462	47044462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	45	653	0	ENST00000329236.7:c.1725G>T	p.Lys575Asn	p.K575N	ENST00000329236	NM_001204466.1	575	aaG/aaT																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48650397	48650397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	45	763	0	ENST00000376670.3:c.367G>T	p.Asp123Tyr	p.D123Y	ENST00000376670	NM_002049.3	123	Gat/Tat																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53224141	53224141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	46	850	4	ENST00000375401.3:c.3410C>T	p.Ala1137Val	p.A1137V	ENST00000375401	NM_004187.3	1137	gCg/gTg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53228018	53228018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	59	853	3	ENST00000375401.3:c.2296C>T	p.Arg766Trp	p.R766W	ENST00000375401	NM_004187.3	766	Cgg/Tgg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410352	63410352	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	69	953	0	ENST00000330258.3:c.2815G>T	p.Glu939Ter	p.E939*	ENST00000330258	NM_152424.3	939	Gaa/Taa																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412510	63412510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	45	779	1	ENST00000330258.3:c.657G>T	p.Glu219Asp	p.E219D	ENST00000330258	NM_152424.3	219	gaG/gaT																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66943638	66943638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	52	1053	2	ENST00000374690.3:c.2718G>T	p.Lys906Asn	p.K906N	ENST00000374690	NM_000044.3	906	aaG/aaT																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70339568	70339568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	51	726	1	ENST00000374080.3:c.237G>T	p.Glu79Asp	p.E79D	ENST00000374080		79	gaG/gaT																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100608209	100608209	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	42	635	0	ENST00000308731.7:c.1881T>G	p.Tyr627Ter	p.Y627*	ENST00000308731	NM_000061.2	627	taT/taG																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100613381	100613381	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	44	608	1	ENST00000308731.7:c.1019C>A	p.Pro340His	p.P340H	ENST00000308731	NM_000061.2	340	cCt/cAt																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100624989	100624989	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	53	542	0	ENST00000308731.7:c.388A>C	p.Asn130His	p.N130H	ENST00000308731	NM_000061.2	130	Aac/Cac																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123179125	123179125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	43	694	2	ENST00000218089.9:c.574T>C	p.Tyr192His	p.Y192H	ENST00000218089	NM_001042749.1	192	Tat/Cat																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18656332	18656333	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	27	385	0	ENST00000266497.5:c.3014dup	p.Ala1006GlyfsTer4	p.A1006Gfs*4	ENST00000266497		1004	tta/ttAa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023720	27023720	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	221	261	0	ENST00000324856.7:c.826G>T	p.Gly276Ter	p.G276*	ENST00000324856	NM_006015.4	276	Gga/Tga																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212812269	212812269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201152419		P-0001292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	243	342	0	ENST00000342788.4:c.307C>T	p.Arg103Cys	p.R103C	ENST00000342788	NM_005235.2	103	Cgc/Tgc																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12645687	12645687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	135	193	0	ENST00000251849.4:c.782C>G	p.Pro261Arg	p.P261R	ENST00000251849	NM_002880.3	261	cCt/cGt																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	241	336	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa																																												NEWRECORD																																		
RYBP	0	MSKCC	GRCh37	3	72495764	72495765	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	197	248	0	ENST00000477973.2:c.305dup	p.Arg103LysfsTer15	p.R103Kfs*15	ENST00000477973	NM_012234.5	103	aga/aAga																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2226859	2226879	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGTCCTCCGCAGGCGGC	GCGGCGTCCTCCGCAGGCGGC	-			P-0001292-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			161	33	98	0	ENST00000398665.3:c.4353_4373del	p.Gly1452_Ala1458del	p.G1452_A1458del	ENST00000398665	NM_032482.2	1447	GCGGCGTCCTCCGCAGGCGGC/-																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0013143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	194	487	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55242448	55242449	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTCCCGTCGCTATCAAGG			P-0013143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1232	383	563	0	ENST00000275493.2:c.2219_2236dup	p.Lys745_Glu746insValProValAlaIleLys	p.K745_E746insVPVAIK	ENST00000275493	NM_005228.3	740	att/aTTCCCGTCGCTATCAAGGtt																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55955100	55955100	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	334	666	0	ENST00000263923.4:c.3445C>T	p.Gln1149Ter	p.Q1149*	ENST00000263923	NM_002253.2	1149	Cag/Tag																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49722905	49722906	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GG			P-0005452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	23	135	2	ENST00000449682.2:c.1420_1421dup	p.Asp475GlnfsTer52	p.D475Qfs*52	ENST00000449682	NM_020998.3	474	cca/ccCCa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151877175	151877175	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	53	355	0	ENST00000262189.6:c.7186C>T	p.Gln2396Ter	p.Q2396*	ENST00000262189	NM_170606.2	2396	Cag/Tag																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133219578	133219578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	46	389	0	ENST00000320574.5:c.4556G>T	p.Arg1519Leu	p.R1519L	ENST00000320574	NM_006231.2	1519	cGc/cTc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115722	8115724	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0005452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	220	585	1	ENST00000346208.3:c.1072_1074del	p.Lys358del	p.K358del	ENST00000346208		356	atGAAg/atg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	379	454	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	879	582	2	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	192	185	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	299	378	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
HOXB13	0	MSKCC	GRCh37	17	46805834	46805834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199799743		P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1471	556	723	1	ENST00000290295.7:c.122C>T	p.Thr41Met	p.T41M	ENST00000290295	NM_006361.5	41	aCg/aTg																																												NEWRECORD																																		
TRAF2	0	MSKCC	GRCh37	9	139793211	139793212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	392	670	2	ENST00000247668.2:c.26dup	p.Gly10TrpfsTer70	p.G10Wfs*70	ENST00000247668	NM_021138.3	7	acc/aCcc																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119759	70119778	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAGGGGCGCCCCTTGCCA	GAGAGGGGCGCCCCTTGCCA	-			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	726	536	1	ENST00000245479.2:c.764_783del	p.Glu255GlyfsTer34	p.E255Gfs*34	ENST00000245479	NM_000346.3	254	cGAGAGGGGCGCCCCTTGCCA/c																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692839	89692839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	90	115	0	ENST00000371953.3:c.323T>A	p.Leu108His	p.L108H	ENST00000371953	NM_000314.4	108	cTt/cAt																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16049691	16049691	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	470	589	1	ENST00000268712.3:c.1081C>T	p.Arg361Ter	p.R361*	ENST00000268712	NM_006311.3	361	Cga/Tga																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42845360	42845360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	199	392	1	ENST00000398585.3:c.902C>T	p.Pro301Leu	p.P301L	ENST00000398585	NM_001135099.1	301	cCg/cTg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575183	48575184	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0012415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	289	362	0	ENST00000342988.3:c.378_379del	p.Val128GlufsTer14	p.V128Efs*14	ENST00000342988	NM_005359.5	126	gTC/g																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000163-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			169	72	216	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11123760	11123760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000163-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			219	113	236	0	ENST00000344626.4:c.2410G>A	p.Gly804Arg	p.G804R	ENST00000344626	NM_003072.3	804	Ggg/Agg																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0000163-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			423	132	329	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0008357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	92	610	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																												NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	74	490	0	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175148	112175148	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	36	249	0	ENST00000257430.4:c.3859delA	p.Ile1287Ter	p.I1287*	ENST00000257430	NM_000038.5	1286	gAa/ga																																												NEWRECORD																																		
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	182	363	1	ENST00000227507.2:c.857C>T	p.Thr286Ile	p.T286I	ENST00000227507	NM_053056.2	286	aCa/aTa																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47699360	47699360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	244	618	0	ENST00000347630.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000347630	NM_001007230.1	50	Gaa/Aaa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692920	89692921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	342	362	1	ENST00000371953.3:c.405dupA	p.Cys136MetfsTer44	p.C136Mfs*44	ENST00000371953	NM_000314.4	135	ata/atAa																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	172	441	1	ENST00000349496.5:c.109T>C	p.Ser37Pro	p.S37P	ENST00000349496	NM_001904.3	37	Tct/Cct																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37879903	37879903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	325	500	0	ENST00000269571.5:c.2198C>T	p.Thr733Ile	p.T733I	ENST00000269571		733	aCa/aTa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106489	27106489	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	638	556	5	ENST00000324856.7:c.6100G>T	p.Glu2034Ter	p.E2034*	ENST00000324856	NM_006015.4	2034	Gag/Tag																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58678097	58678097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	422	561	0	ENST00000305921.3:c.322G>A	p.Gly108Ser	p.G108S	ENST00000305921	NM_003620.3	108	Ggc/Agc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157469814	157469817	+	frameshift_variant	Frame_Shift_Del	DEL	CCAG	CCAG	-			P-0010310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	318	463	0	ENST00000346085.5:c.2608_2611del	p.Pro870GlyfsTer43	p.P870Gfs*43	ENST00000346085	NM_020732.3	870	CCAGgg/gg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591076	67591090	+	inframe_deletion	In_Frame_Del	DEL	CGAGAAATTGACAAA	CGAGAAATTGACAAA	-			P-0010310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	245	270	0	ENST00000274335.5:c.1671_1685del	p.Glu558_Arg562del	p.E558_R562del	ENST00000274335		557	CGAGAAATTGACAAA/-																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	152	234	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	162	286	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52719104	52719104	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	18	262	0	ENST00000322088.6:c.880T>C	p.Cys294Arg	p.C294R	ENST00000322088	NM_014225.5	294	Tgt/Cgt																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25972564	25972564	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0004462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	113	197	0	ENST00000435504.4:c.1860+1del		p.X620_splice	ENST00000435504		620																																													NEWRECORD																																		
GPS2	0	MSKCC	GRCh37	17	7218291	7218292	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	137	280	0	ENST00000380728.2:c.80dup	p.Arg28AlafsTer11	p.R28Afs*11	ENST00000380728		27	gag/gaAg																																												NEWRECORD																																		
H3F3C	0	MSKCC	GRCh37	12	31944758	31944758	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003442-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			140	92	157	0	ENST00000340398.3:c.343A>G	p.Lys115Glu	p.K115E	ENST00000340398	NM_001013699.2	115	Aag/Gag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578484	7578485	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003442-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			81	224	264	0	ENST00000269305.4:c.445dup	p.Ser149PhefsTer32	p.S149Ffs*32	ENST00000269305	NM_001126112.2	149	tcc/tTcc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49050894	49050894	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003442-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			160	185	264	0	ENST00000267163.4:c.2581del	p.Arg861GlufsTer12	p.R861Efs*12	ENST00000267163	NM_000321.2	860	Aaa/aa																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150004599	150004600	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0003442-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			394	41	429	0	ENST00000253339.5:c.1625_1626del	p.Val542AspfsTer6	p.V542Dfs*6	ENST00000253339		542	gTG/g																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	120	322	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0009270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	134	240	0	ENST00000269305.4:c.716_718dup	p.Asn239dup	p.N239dup	ENST00000269305	NM_001126112.2	239	agt/aACAgt																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38949907	38949907	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	83	331	0	ENST00000357387.3:c.4043C>G	p.Ser1348Cys	p.S1348C	ENST00000357387	NM_152756.3	1348	tCt/tGt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	105	226	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14024721	14024721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	16	312	0	ENST00000311895.7:c.947C>T	p.Thr316Met	p.T316M	ENST00000311895	NM_005236.2	316	aCg/aTg																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419870	152419871	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	23	138	0	ENST00000206249.3:c.1560dupA	p.Gly521ArgfsTer18	p.G521Rfs*18	ENST00000206249	NM_000125.3	519	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578284	7578288	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CCAGA	CCAGA	-			P-0000274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			61	15	381	0	ENST00000269305.4:c.561_565delTCTGG	p.Leu188ProfsTer19	p.L188Pfs*19	ENST00000269305	NM_001126112.2	187	ggTCTGGcc/ggcc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	149	526	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7573978	7573979	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GTTCCAAGGCCTCATTCAGC			P-0004624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	124	601	0	ENST00000269305.4:c.1029_1048dup	p.Leu350ArgfsTer2	p.L350Rfs*2	ENST00000269305	NM_001126112.2	350	ctc/cGCTGAATGAGGCCTTGGAACtc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0001302-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	192	400	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86685344	86685344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0001302-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	77	144	0	ENST00000274376.6:c.3060G>C	p.Gln1020His	p.Q1020H	ENST00000274376	NM_002890.2	1020	caG/caC																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174901	112174901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001302-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	303	284	0	ENST00000257430.4:c.3610C>T	p.Gln1204Ter	p.Q1204*	ENST00000257430	NM_000038.5	1204	Caa/Taa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579382	7579383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001302-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	257	287	0	ENST00000269305.4:c.304dup	p.Thr102AsnfsTer47	p.T102Nfs*47	ENST00000269305	NM_001126112.2	102	acc/aAcc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30670943	30670943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	139	359	0	ENST00000376406.3:c.5803G>A	p.Val1935Ile	p.V1935I	ENST00000376406	NM_014641.2	1935	Gtc/Atc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63851131	63851131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	58	224	0	ENST00000279873.7:c.1909G>A	p.Asp637Asn	p.D637N	ENST00000279873	NM_032199.2	637	Gac/Aac																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38508183	38508183	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	72	391	0	ENST00000254066.5:c.491A>C	p.Lys164Thr	p.K164T	ENST00000254066	NM_000964.3	164	aAg/aCg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76814213	76814213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	138	620	0	ENST00000373344.5:c.6431A>G	p.Asp2144Gly	p.D2144G	ENST00000373344	NM_000489.3	2144	gAc/gGc																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577281	64577282	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	221	294	0	ENST00000337652.1:c.300dup	p.Val101ArgfsTer16	p.V101Rfs*16	ENST00000337652	NM_130803.2	100	-/C																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	99	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	45	390	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	84	325	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	65	386	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	71	206	1	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	47	333	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																												NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	26	381	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156838363	156838363	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200132482		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	45	288	0	ENST00000524377.1:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000524377	NM_002529.3	214	cGg/cAg																																												NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	29	516	3	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																												NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	31	223	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42796744	42796744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	58	294	0	ENST00000575354.2:c.3202G>A	p.Gly1068Ser	p.G1068S	ENST00000575354	NM_015125.3	1068	Ggt/Agt																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145741760	145741760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	95	373	1	ENST00000428558.2:c.743G>A	p.Arg248His	p.R248H	ENST00000428558	NM_004260.3	248	cGt/cAt																																												NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50468158	50468158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	39	270	0	ENST00000331340.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331340	NM_006060.4	465	Gaa/Aaa																																												NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135785964	135785964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs118203506		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	14	183	0	ENST00000298552.3:c.1257del	p.Arg420GlyfsTer20	p.R420Gfs*20	ENST00000298552	NM_001162426.1	419	ccC/cc																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	59	562	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																												NEWRECORD																																		
SDHAF2	0	MSKCC	GRCh37	11	61197631	61197631	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	49	438	0	ENST00000301761.2:c.13A>G	p.Thr5Ala	p.T5A	ENST00000301761	NM_017841.2	5	Aca/Gca																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11264661	11264661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	26	380	0	ENST00000361445.4:c.3901C>T	p.Arg1301Cys	p.R1301C	ENST00000361445	NM_004958.3	1301	Cgc/Tgc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11273503	11273503	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	15	346	0	ENST00000361445.4:c.3238C>T	p.Arg1080Cys	p.R1080C	ENST00000361445	NM_004958.3	1080	Cgt/Tgt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11319406	11319406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149221273		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	59	374	0	ENST00000361445.4:c.61G>A	p.Val21Ile	p.V21I	ENST00000361445	NM_004958.3	21	Gtc/Atc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16255472	16255472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	28	287	0	ENST00000375759.3:c.2737C>A	p.Leu913Met	p.L913M	ENST00000375759	NM_015001.2	913	Ctg/Atg																																												NEWRECORD																																		
SDHB	0	MSKCC	GRCh37	1	17371344	17371344	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202119350		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	39	348	1	ENST00000375499.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000375499	NM_003000.2	38	Cgt/Tgt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27059227	27059227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	54	405	0	ENST00000324856.7:c.1864A>G	p.Lys622Glu	p.K622E	ENST00000324856	NM_006015.4	622	Aag/Gag																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156841541	156841541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	43	242	2	ENST00000524377.1:c.844G>A	p.Val282Ile	p.V282I	ENST00000524377	NM_002529.3	282	Gtc/Atc																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128015258	128015258	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115312738		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	35	338	0	ENST00000285398.2:c.2263G>A	p.Asp755Asn	p.D755N	ENST00000285398	NM_000122.1	755	Gac/Aac																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158626970	158626970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	78	567	1	ENST00000263640.3:c.700G>A	p.Val234Met	p.V234M	ENST00000263640	NM_001105.4	234	Gtg/Atg																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662401	227662401	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	28	168	0	ENST00000305123.5:c.1054A>G	p.Asn352Asp	p.N352D	ENST00000305123	NM_005544.2	352	Aac/Gac																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713802	30713802	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	108	238	0	ENST00000359013.4:c.1202T>C	p.Val401Ala	p.V401A	ENST00000359013	NM_001024847.2	401	gTg/gCg																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30715613	30715613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	113	212	0	ENST00000359013.4:c.1346A>G	p.Tyr449Cys	p.Y449C	ENST00000359013	NM_001024847.2	449	tAc/tGc																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49924781	49924781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	82	556	1	ENST00000296474.3:c.4162C>T	p.Arg1388Cys	p.R1388C	ENST00000296474	NM_002447.2	1388	Cgc/Tgc																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49933744	49933744	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	69	524	0	ENST00000296474.3:c.2533C>T	p.Arg845Ter	p.R845*	ENST00000296474	NM_002447.2	845	Cga/Tga																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142178078	142178078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	17	222	0	ENST00000350721.4:c.7340C>A	p.Pro2447His	p.P2447H	ENST00000350721	NM_001184.3	2447	cCt/cAt																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	56	229	0	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177968	112177968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	71	371	0	ENST00000257430.4:c.6677G>A	p.Arg2226Gln	p.R2226Q	ENST00000257430	NM_000038.5	2226	cGa/cAa																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180047905	180047905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	18	293	0	ENST00000261937.6:c.2270T>C	p.Val757Ala	p.V757A	ENST00000261937	NM_182925.4	757	gTc/gCc																																												NEWRECORD																																		
HIST1H3E	0	MSKCC	GRCh37	6	26225530	26225530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	118	876	0	ENST00000360408.1:c.148C>T	p.Arg50Cys	p.R50C	ENST00000360408	NM_003532.2	50	Cgc/Tgc																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106536224	106536224	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	81	262	0	ENST00000369096.4:c.191A>G	p.Asp64Gly	p.D64G	ENST00000369096	NM_001198.3	64	gAc/gGc																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98220390	98220390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	52	266	0	ENST00000331920.6:c.3073C>T	p.Arg1025Cys	p.R1025C	ENST00000331920	NM_000264.3	1025	Cgc/Tgc																																												NEWRECORD																																		
LMO1	0	MSKCC	GRCh37	11	8251976	8251976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	29	360	0	ENST00000335790.3:c.101G>A	p.Arg34His	p.R34H	ENST00000335790	NM_002315.2	34	cGc/cAc																																												NEWRECORD																																		
FGF4	0	MSKCC	GRCh37	11	69588192	69588192	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	16	525	0	ENST00000168712.1:c.506A>G	p.Tyr169Cys	p.Y169C	ENST00000168712	NM_002007.2	169	tAc/tGc																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100920750	100920750	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	28	542	0	ENST00000325455.5:c.2398A>G	p.Thr800Ala	p.T800A	ENST00000325455	NM_001202474.3	800	Acc/Gcc																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100920785	100920785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	51	463	0	ENST00000325455.5:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000325455	NM_001202474.3	788	cGg/cAg																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4385261	4385261	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	55	364	0	ENST00000261254.3:c.286T>A	p.Ser96Thr	p.S96T	ENST00000261254	NM_001759.3	96	Tcc/Acc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3828032	3828032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	42	329	0	ENST00000262367.5:c.2093C>T	p.Ala698Val	p.A698V	ENST00000262367	NM_004380.2	698	gCa/gTa																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3831284	3831284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	74	235	0	ENST00000262367.5:c.1597G>A	p.Ala533Thr	p.A533T	ENST00000262367	NM_004380.2	533	Gca/Aca																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81934239	81934239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	47	384	0	ENST00000359376.3:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000359376	NM_002661.3	406	Gag/Aag																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81941311	81941311	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	22	365	0	ENST00000359376.3:c.1489G>A	p.Ala497Thr	p.A497T	ENST00000359376	NM_002661.3	497	Gcc/Acc																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37646849	37646849	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	40	434	0	ENST00000447079.4:c.1971G>C	p.Glu657Asp	p.E657D	ENST00000447079	NM_015083.1	657	gaG/gaC																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37682393	37682393	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61741615		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	66	350	2	ENST00000447079.4:c.3584C>T	p.Thr1195Met	p.T1195M	ENST00000447079	NM_015083.1	1195	aCg/aTg																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63537616	63537616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	55	457	2	ENST00000307078.5:c.1016G>A	p.Arg339His	p.R339H	ENST00000307078	NM_004655.3	339	cGc/cAc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2210735	2210735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	36	394	0	ENST00000398665.3:c.1232G>A	p.Arg411His	p.R411H	ENST00000398665	NM_032482.2	411	cGc/cAc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2222475	2222475	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200919682		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	10	162	0	ENST00000398665.3:c.3307G>A	p.Val1103Met	p.V1103M	ENST00000398665	NM_032482.2	1103	Gtg/Atg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5243960	5243960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	16	278	0	ENST00000357368.4:c.1522G>A	p.Gly508Ser	p.G508S	ENST00000357368	NM_002850.3	508	Ggc/Agc																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7126648	7126648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	46	258	0	ENST00000302850.5:c.2960C>T	p.Pro987Leu	p.P987L	ENST00000302850	NM_000208.2	987	cCg/cTg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7142851	7142851	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139912396		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	15	226	0	ENST00000302850.5:c.2518G>A	p.Val840Ile	p.V840I	ENST00000302850	NM_000208.2	840	Gtc/Atc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11141534	11141534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	21	424	0	ENST00000344626.4:c.3511G>A	p.Val1171Met	p.V1171M	ENST00000344626	NM_003072.3	1171	Gtg/Atg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11144017	11144017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	41	356	2	ENST00000344626.4:c.3598C>T	p.Arg1200Cys	p.R1200C	ENST00000344626	NM_003072.3	1200	Cgt/Tgt																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50905873	50905873	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	34	472	2	ENST00000440232.2:c.845C>T	p.Thr282Met	p.T282M	ENST00000440232	NM_002691.3	282	aCg/aTg																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50912125	50912125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	59	566	1	ENST00000440232.2:c.1859C>T	p.Thr620Met	p.T620M	ENST00000440232	NM_002691.3	620	aCg/aTg																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47428277	47428277	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	13	197	0	ENST00000377045.4:c.1237A>C	p.Thr413Pro	p.T413P	ENST00000377045	NM_001654.4	413	Act/Cct																																												NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	65	402	2	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	101	469	3	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151859859	151859859	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	10	244	0	ENST00000262189.6:c.10803del	p.Lys3604ArgfsTer26	p.K3604Rfs*26	ENST00000262189	NM_170606.2	3601	aaA/aa																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152129338	152129338	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	14	344	2	ENST00000206249.3:c.296del	p.Pro99HisfsTer10	p.P99Hfs*10	ENST00000206249	NM_000125.3	97	ttC/tt																																												NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19261529	19261529	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	52	431	0	ENST00000162023.5:c.16del	p.Ile6SerfsTer14	p.I6Sfs*14	ENST00000162023		6	Atc/tc																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	69987193	69987193	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	17	236	0	ENST00000352241.4:c.579del	p.Glu194ArgfsTer19	p.E194Rfs*19	ENST00000352241	NM_198159.2	192	gAa/ga																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180030307	180030308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	14	464	0	ENST00000261937.6:c.3976dup	p.Ala1326GlyfsTer118	p.A1326Gfs*118	ENST00000261937	NM_182925.4	1326	gcc/gGcc																																												NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63412648	63412648	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	46	253	0	ENST00000330258.3:c.519del	p.Phe173LeufsTer36	p.F173Lfs*36	ENST00000330258	NM_152424.3	173	ttT/tt																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190660534	190660534	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	93	186	0	ENST00000441310.2:c.175del	p.Glu59ArgfsTer10	p.E59Rfs*10	ENST00000441310	NM_000534.4	58	Ggg/gg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139401034	139401034	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	28	355	0	ENST00000277541.6:c.3959del	p.Gly1320AlafsTer125	p.G1320Afs*125	ENST00000277541	NM_017617.3	1320	gGc/gc																																												NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19257365	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0004362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	21	240	0	ENST00000162023.5:c.767dup	p.Glu257ArgfsTer28	p.E257Rfs*28	ENST00000162023		256	cca/ccCa																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	35	358	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	42	314	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	321	301	2	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17945969	17945969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	247	423	1	ENST00000458235.1:c.1970G>A	p.Arg657Gln	p.R657Q	ENST00000458235	NM_000215.3	657	cGg/cAg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5231584	5231584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	84	136	0	ENST00000357368.4:c.1892G>A	p.Arg631His	p.R631H	ENST00000357368	NM_002850.3	631	cGc/cAc																																												NEWRECORD																																		
HIST1H3G	0	MSKCC	GRCh37	6	26271338	26271339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1387	175	989	0	ENST00000305910.3:c.274dup	p.Ala92GlyfsTer15	p.A92Gfs*15	ENST00000305910	NM_003534.2	92	gcc/gGcc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974796	21974805	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCATGCT	GCTCCATGCT	-			P-0007903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	63	134	0	ENST00000304494.5:c.22_31del	p.Ser8LeufsTer15	p.S8Lfs*15	ENST00000304494	NM_000077.4	8	AGCATGGAGCct/ct																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974796	21974805	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCATGCT	GCTCCATGCT	-			P-0007903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	63	134	0	ENST00000304494.5:c.22_31del	p.Ser8LeufsTer15	p.S8Lfs*15	ENST00000304494	NM_000077.4	8	AGCATGGAGCct/ct																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	271	408	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	203	327	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	146	313	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	118	291	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																												NEWRECORD																																		
MYCL1	0	MSKCC	GRCh37	1	40363231	40363231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	133	396	2	ENST00000397332.2:c.998C>T	p.Ala333Val	p.A333V	ENST00000397332	NM_001033082.2	333	gCg/gTg																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55143618	55143618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	113	469	0	ENST00000257290.5:c.1850G>A	p.Arg617Gln	p.R617Q	ENST00000257290	NM_006206.4	617	cGg/cAg																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112041065	112041065	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1385	241	995	0	ENST00000368678.4:c.190T>A	p.Phe64Ile	p.F64I	ENST00000368678		64	Ttt/Att																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114912158	114912158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1549	138	1004	1	ENST00000543371.1:c.1228C>A	p.His410Asn	p.H410N	ENST00000543371	NM_001198531.1	410	Cat/Aat																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007645	45007645	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	169	282	0	ENST00000558401.1:c.92C>A	p.Ser31Ter	p.S31*	ENST00000558401	NM_004048.2	31	tCa/tAa																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117854	70117854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	42	369	0	ENST00000245479.2:c.322C>T	p.Pro108Ser	p.P108S	ENST00000245479	NM_000346.3	108	Ccc/Tcc																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119683	70119683	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	163	683	0	ENST00000245479.2:c.686-1G>A		p.X229_splice	ENST00000245479	NM_000346.3	229																																													NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591978	48591978	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	83	249	0	ENST00000342988.3:c.1139+2T>C		p.X380_splice	ENST00000342988	NM_005359.5	380																																													NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610402	10610402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	99	440	0	ENST00000171111.5:c.308C>T	p.Ser103Phe	p.S103F	ENST00000171111	NM_203500.1	103	tCc/tTc																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12011139	12011140	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	116	426	0	ENST00000353533.5:c.547dup	p.Thr183AsnfsTer4	p.T183Nfs*4	ENST00000353533	NM_003010.3	182	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	158	336	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72076823	72076823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	46	344	1	ENST00000357731.5:c.674C>A	p.Pro225His	p.P225H	ENST00000357731	NM_173808.2	225	cCt/cAt																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153247244	153247244	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	157	447	0	ENST00000281708.4:c.1558G>T	p.Asp520Tyr	p.D520Y	ENST00000281708	NM_033632.3	520	Gat/Tat																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128845185	128845185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	239	401	1	ENST00000249373.3:c.679C>T	p.His227Tyr	p.H227Y	ENST00000249373	NM_005631.4	227	Cac/Tac																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97888819	97888819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	92	518	0	ENST00000289081.3:c.888G>C	p.Glu296Asp	p.E296D	ENST00000289081	NM_000136.2	296	gaG/gaC																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49423021	49423021	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	230	379	0	ENST00000301067.7:c.14076-2A>G		p.X4692_splice	ENST00000301067	NM_003482.3	4692																																													NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32906873	32906873	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	27	246	0	ENST00000380152.3:c.1258G>C	p.Asp420His	p.D420H	ENST00000380152		420	Gac/Cac																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89351185	89351185	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	131	531	0	ENST00000301030.4:c.1765C>G	p.Leu589Val	p.L589V	ENST00000301030	NM_001256183.1	589	Ctg/Gtg																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971032	21971065	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGT	GCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGT	-			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	179	243	0	ENST00000304494.5:c.293_326del	p.His98ProfsTer37	p.H98Pfs*37	ENST00000304494	NM_000077.4	98	cACCGGGCCGGGGCGCGGCTGGACGTGCGCGATGCc/cc																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971032	21971065	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGT	GCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGT	-			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	179	243	0	ENST00000304494.5:c.293_326del	p.His98ProfsTer37	p.H98Pfs*37	ENST00000304494	NM_000077.4	98	cACCGGGCCGGGGCGCGGCTGGACGTGCGCGATGCc/cc																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971032	21971065	+	frameshift_variant	Frame_Shift_Del	DEL	GCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGT	GCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGT	-			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	179	243	0	ENST00000304494.5:c.293_326del	p.His98ProfsTer37	p.H98Pfs*37	ENST00000304494	NM_000077.4	98	cACCGGGCCGGGGCGCGGCTGGACGTGCGCGATGCc/cc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187627744	187627745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AACGCCAG			P-0005931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	148	416	0	ENST00000441802.2:c.3230_3237dup	p.Gly1080LeufsTer8	p.G1080Lfs*8	ENST00000441802	NM_005245.3	1079	-/CTGGCGTT																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720857	89720857	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	30	215	0	ENST00000371953.3:c.1008del	p.Ser338LeufsTer6	p.S338Lfs*6	ENST00000371953	NM_000314.4	336	taC/ta																																												NEWRECORD																																		
IL10	0	MSKCC	GRCh37	1	206945665	206945665	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	45	625	0	ENST00000423557.1:c.116A>T	p.Asn39Ile	p.N39I	ENST00000423557	NM_000572.2	39	aAc/aTc																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183776	10183777	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	30	334	0	ENST00000256474.2:c.245_246insT	p.Val83ArgfsTer49	p.V83Rfs*49	ENST00000256474	NM_000551.3	82	cgc/cgTc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106821	27106821	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	35	411	1	ENST00000324856.7:c.6433del	p.Glu2145ArgfsTer55	p.E2145Rfs*55	ENST00000324856	NM_006015.4	2144	ctG/ct																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	18	195	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	24	158	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187627736	187627736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	11	507	0	ENST00000441802.2:c.3246C>A	p.Phe1082Leu	p.F1082L	ENST00000441802	NM_005245.3	1082	ttC/ttA																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41765775	41765775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	10	236	0	ENST00000301178.4:c.2651C>T	p.Ser884Phe	p.S884F	ENST00000301178	NM_021913.4	884	tCc/tTc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44911017	44911017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	14	488	0	ENST00000377967.4:c.718C>T	p.Gln240Ter	p.Q240*	ENST00000377967	NM_021140.2	240	Caa/Taa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44949018	44949018	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	11	412	0	ENST00000377967.4:c.3579G>A	p.Trp1193Ter	p.W1193*	ENST00000377967	NM_021140.2	1193	tgG/tgA																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123211866	123211867	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	41	507	0	ENST00000218089.9:c.2737dup	p.Ile913AsnfsTer5	p.I913Nfs*5	ENST00000218089	NM_001042749.1	911	-/A																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123195623	123195624	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0003391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	17	189	0	ENST00000218089.9:c.1537_1538del	p.Leu513AsnfsTer3	p.L513Nfs*3	ENST00000218089	NM_001042749.1	513	CTa/a																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44918538	44918539	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0003391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	44	480	0	ENST00000377967.4:c.1024_1025del	p.Ile342LeufsTer21	p.I342Lfs*21	ENST00000377967	NM_021140.2	341	TAt/t																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	158	380	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720805	89720808	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	95	146	0	ENST00000371953.3:c.956_959delCTTT	p.Thr319LysfsTer24	p.T319Kfs*24	ENST00000371953	NM_000314.4	319	aCTTTa/aa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	436	448	1	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16257143	16257143	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	303	610	4	ENST00000375759.3:c.4408C>T	p.Arg1470Ter	p.R1470*	ENST00000375759	NM_015001.2	1470	Cga/Tga																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	151	264	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103519134	103519135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	295	595	1	ENST00000355739.4:c.2478dup	p.Asn827Ter	p.N827*	ENST00000355739	NM_000123.3	824	-/T																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	152	378	0	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405																																													NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830902	72830903	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	388	988	1	ENST00000268489.5:c.5677_5678dup	p.Asp1894GlyfsTer21	p.D1894Gfs*21	ENST00000268489	NM_006885.3	1893	agg/agAGg																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112041025	112041025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	532	728	0	ENST00000368678.4:c.230G>A	p.Arg77His	p.R77H	ENST00000368678		77	cGt/cAt																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249405	110249405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	348	761	0	ENST00000374672.4:c.1168C>T	p.Arg390Trp	p.R390W	ENST00000374672	NM_004235.4	390	Cgg/Tgg																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	251542	251542	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200397144		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	157	362	1	ENST00000264932.6:c.1753C>T	p.Arg585Trp	p.R585W	ENST00000264932	NM_004168.2	585	Cgg/Tgg																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43596032	43596032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	199	482	0	ENST00000355710.3:c.199C>T	p.Arg67Cys	p.R67C	ENST00000355710	NM_020975.4	67	Cgc/Tgc																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150016264	150016264	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	276	651	3	ENST00000253339.5:c.442C>T	p.Arg148Ter	p.R148*	ENST00000253339		148	Cga/Tga																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258878	16258878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	310	666	0	ENST00000375759.3:c.6143C>T	p.Ala2048Val	p.A2048V	ENST00000375759	NM_015001.2	2048	gCt/gTt																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61118871	61118871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	261	500	0	ENST00000295025.8:c.64C>T	p.Arg22Cys	p.R22C	ENST00000295025	NM_002908.2	22	Cgt/Tgt																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220437229	220437229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	325	757	1	ENST00000243786.2:c.133G>A	p.Ala45Thr	p.A45T	ENST00000243786	NM_002191.3	45	Gcg/Acg																																												NEWRECORD																																		
FOXL2	0	MSKCC	GRCh37	3	138664664	138664664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	22	28	0	ENST00000330315.3:c.901G>A	p.Ala301Thr	p.A301T	ENST00000330315	NM_023067.3	301	Gcg/Acg																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131940596	131940596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	356	562	0	ENST00000265335.6:c.2623C>G	p.Leu875Val	p.L875V	ENST00000265335		875	Ctt/Gtt																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149502659	149502659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	154	333	0	ENST00000261799.4:c.2129C>T	p.Pro710Leu	p.P710L	ENST00000261799	NM_002609.3	710	cCg/cTg																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162206804	162206804	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	190	381	0	ENST00000366898.1:c.871G>A	p.Ala291Thr	p.A291T	ENST00000366898	NM_004562.2	291	Gct/Act																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6029581	6029581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	504	572	0	ENST00000265849.7:c.994G>A	p.Val332Ile	p.V332I	ENST00000265849	NM_000535.5	332	Gtt/Att																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6038848	6038848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	627	650	0	ENST00000265849.7:c.596G>A	p.Arg199His	p.R199H	ENST00000265849	NM_000535.5	199	cGt/cAt																																												NEWRECORD																																		
TRAF2	0	MSKCC	GRCh37	9	139802558	139802558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	175	714	0	ENST00000247668.2:c.403G>A	p.Glu135Lys	p.E135K	ENST00000247668	NM_021138.3	135	Gaa/Aaa																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43598056	43598056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	177	345	0	ENST00000355710.3:c.604G>A	p.Val202Met	p.V202M	ENST00000355710	NM_020975.4	202	Gtg/Atg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70451546	70451546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	288	586	0	ENST00000373644.4:c.6386C>T	p.Ala2129Val	p.A2129V	ENST00000373644	NM_030625.2	2129	gCg/gTg																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	438183	438183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	78	453	0	ENST00000399788.2:c.1786C>T	p.Arg596Cys	p.R596C	ENST00000399788	NM_001042603.1	596	Cgt/Tgt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46285669	46285669	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	203	501	0	ENST00000334344.6:c.5029C>T	p.Arg1677Ter	p.R1677*	ENST00000334344	NM_152641.2	1677	Cga/Tga																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28602330	28602330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	290	552	0	ENST00000241453.7:c.2038G>A	p.Ala680Thr	p.A680T	ENST00000241453	NM_004119.2	680	Gcg/Acg																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110436413	110436413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	176	414	0	ENST00000375856.3:c.1988C>T	p.Ala663Val	p.A663V	ENST00000375856	NM_003749.2	663	gCg/gTg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3778738	3778738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	66	452	2	ENST00000262367.5:c.6310C>T	p.Arg2104Cys	p.R2104C	ENST00000262367	NM_004380.2	2104	Cgc/Tgc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10274018	10274018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	255	631	0	ENST00000330684.3:c.251C>T	p.Thr84Met	p.T84M	ENST00000330684	NM_001134407.1	84	aCg/aTg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81939042	81939042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	352	869	0	ENST00000359376.3:c.1397T>C	p.Val466Ala	p.V466A	ENST00000359376	NM_002661.3	466	gTc/gCc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89351736	89351736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	411	911	3	ENST00000301030.4:c.1214G>A	p.Arg405His	p.R405H	ENST00000301030	NM_001256183.1	405	cGt/cAt																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78858817	78858817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	188	456	0	ENST00000306801.3:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000306801	NM_020761.2	618	Gca/Aca																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78919548	78919548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	40	443	0	ENST00000306801.3:c.3107C>T	p.Pro1036Leu	p.P1036L	ENST00000306801	NM_020761.2	1036	cCg/cTg																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10291562	10291562	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	116	610	0	ENST00000340748.4:c.118-1G>A		p.X40_splice	ENST00000340748		40																																													NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15291860	15291860	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146214060		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	224	574	0	ENST00000263388.2:c.2906G>A	p.Arg969Gln	p.R969Q	ENST00000263388	NM_000435.2	969	cGg/cAg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42793159	42793159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	201	501	1	ENST00000575354.2:c.1051C>T	p.Arg351Trp	p.R351W	ENST00000575354	NM_015125.3	351	Cgg/Tgg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42797955	42797955	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140554618		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	313	749	2	ENST00000575354.2:c.4007C>T	p.Pro1336Leu	p.P1336L	ENST00000575354	NM_015125.3	1336	cCg/cTg																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46277819	46277819	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1406	179	636	0	ENST00000371998.3:c.3617T>C	p.Met1206Thr	p.M1206T	ENST00000371998		1206	aTg/aCg																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39772519	39772519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	307	566	1	ENST00000288319.7:c.722C>T	p.Thr241Met	p.T241M	ENST00000288319	NM_182918.3	241	aCg/aTg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41574253	41574253	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201097711		P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	245	598	1	ENST00000263253.7:c.6538C>T	p.Arg2180Ter	p.R2180*	ENST00000263253	NM_001429.3	2180	Cga/Tga																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44894174	44894174	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	358	354	0	ENST00000377967.4:c.565-2A>G		p.X189_splice	ENST00000377967	NM_021140.2	189																																													NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039372	47039372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	334	322	1	ENST00000329236.7:c.764G>A	p.Arg255His	p.R255H	ENST00000329236	NM_001204466.1	255	cGc/cAc																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65330647	65330648	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	104	434	0	ENST00000342505.4:c.998_999del	p.Ser333CysfsTer2	p.S333Cfs*2	ENST00000342505	NM_002227.2	333	tCT/t																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48018082	48018082	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	259	565	0	ENST00000234420.5:c.278del	p.Gly93GlufsTer56	p.G93Efs*56	ENST00000234420	NM_000179.2	93	Gga/ga																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	356	309	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	572	445	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	307	423	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	145	214	2	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073717	8073717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	896	704	0	ENST00000377482.5:c.942C>A	p.Asp314Glu	p.D314E	ENST00000377482	NM_018948.3	314	gaC/gaA																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72832038	72832038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1355	381	681	0	ENST00000268489.5:c.4543G>C	p.Glu1515Gln	p.E1515Q	ENST00000268489	NM_006885.3	1515	Gaa/Caa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174000	112174000	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	114	340	0	ENST00000257430.4:c.2709del	p.Asp903GlufsTer13	p.D903Efs*13	ENST00000257430	NM_000038.5	903	gaC/ga																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	46	431	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	49	433	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	106	428	3	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165212	47165213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	56	449	0	ENST00000409792.3:c.913dup	p.Thr305AsnfsTer4	p.T305Nfs*4	ENST00000409792	NM_014159.6	305	aca/aAca																																												NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	21	89	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	80	554	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32910661	32910662	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	72	778	3	ENST00000380152.3:c.2175dup	p.Val726SerfsTer25	p.V726Sfs*25	ENST00000380152		723	-/A																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55221711	55221711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	110	331	0	ENST00000275493.2:c.755G>A	p.Arg252His	p.R252H	ENST00000275493	NM_005228.3	252	cGc/cAc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	35	441	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	154	634	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	58	612	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	51	646	3	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	142	707	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41743896	41743896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	144	481	0	ENST00000301178.4:c.836delC	p.Pro279GlnfsTer18	p.P279Qfs*18	ENST00000301178	NM_021913.4	277	gaC/ga																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187558039	187558039	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	51	308	0	ENST00000441802.2:c.3672delC	p.Lys1225AsnfsTer9	p.K1225Nfs*9	ENST00000441802	NM_005245.3	1224	ccC/cc																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56872937	56872937	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	102	670	5	ENST00000308159.5:c.2097delT	p.Phe699LeufsTer19	p.F699Lfs*19	ENST00000308159	NM_014669.4	698	Ttt/tt																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176709485	176709485	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	84	646	0	ENST00000439151.2:c.5912A>G	p.Tyr1971Cys	p.Y1971C	ENST00000439151	NM_022455.4	1971	tAt/tGt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174910	112174910	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	43	429	0	ENST00000257430.4:c.3622del	p.Thr1208ProfsTer57	p.T1208Pfs*57	ENST00000257430	NM_000038.5	1207	Aaa/aa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16257915	16257915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	107	211	0	ENST00000375759.3:c.5180A>G	p.Gln1727Arg	p.Q1727R	ENST00000375759	NM_015001.2	1727	cAg/cGg																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37045935	37045935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	60	499	0	ENST00000231790.2:c.350C>T	p.Thr117Met	p.T117M	ENST00000231790	NM_000249.3	117	aCg/aTg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89478272	89478272	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	43	479	0	ENST00000336596.2:c.2091T>G	p.Ile697Met	p.I697M	ENST00000336596	NM_005233.5	697	atT/atG																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55151655	55151655	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	68	457	0	ENST00000257290.5:c.2439+2T>C		p.X813_splice	ENST00000257290	NM_006206.4	813																																													NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173962	112173962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	46	318	0	ENST00000257430.4:c.2671A>G	p.Met891Val	p.M891V	ENST00000257430	NM_000038.5	891	Atg/Gtg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174369	112174369	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	39	369	0	ENST00000257430.4:c.3078T>A	p.Asn1026Lys	p.N1026K	ENST00000257430	NM_000038.5	1026	aaT/aaA																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176520258	176520258	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	130	263	0	ENST00000292408.4:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000292408	NM_213647.1	393	Cag/Tag																																												NEWRECORD																																		
VEGFA	0	MSKCC	GRCh37	6	43748503	43748503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	167	641	0	ENST00000523873.1:c.457C>T	p.Arg153Ter	p.R153*	ENST00000523873		153	Cga/Tga																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55268075	55268075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	84	477	0	ENST00000275493.2:c.2915C>T	p.Ala972Val	p.A972V	ENST00000275493	NM_005228.3	972	gCc/gTc																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5123095	5123095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	37	477	0	ENST00000381652.3:c.3151A>G	p.Ile1051Val	p.I1051V	ENST00000381652	NM_004972.3	1051	Att/Gtt																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139390915	139390915	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	118	349	0	ENST00000277541.6:c.7276A>G	p.Ser2426Gly	p.S2426G	ENST00000277541	NM_017617.3	2426	Agc/Ggc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139399279	139399279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	119	358	1	ENST00000277541.6:c.4864C>T	p.Arg1622Cys	p.R1622C	ENST00000277541	NM_017617.3	1622	Cgc/Tgc																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114925397	114925397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	153	643	3	ENST00000543371.1:c.1475C>T	p.Ser492Leu	p.S492L	ENST00000543371	NM_001198531.1	492	tCg/tTg																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123279581	123279581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	122	437	1	ENST00000358487.5:c.851C>T	p.Ala284Val	p.A284V	ENST00000358487	NM_000141.4	284	gCc/gTc																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21563018	21563018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	83	255	1	ENST00000382592.4:c.901G>A	p.Gly301Ser	p.G301S	ENST00000382592	NM_014572.2	301	Ggc/Agc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32911797	32911797	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	55	662	0	ENST00000380152.3:c.3305A>G	p.Asn1102Ser	p.N1102S	ENST00000380152		1102	aAt/aGt																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89346783	89346783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	93	474	0	ENST00000301030.4:c.6167A>G	p.Tyr2056Cys	p.Y2056C	ENST00000301030	NM_001256183.1	2056	tAc/tGc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29679273	29679273	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	56	346	0	ENST00000358273.4:c.7458-2A>C		p.X2486_splice	ENST00000358273	NM_001042492.2	2486																																													NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435777	56435777	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1055597951		P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	85	239	0	ENST00000407977.2:c.1360C>T	p.Arg454Cys	p.R454C	ENST00000407977		454	Cgc/Tgc																																												NEWRECORD																																		
MALT1	0	MSKCC	GRCh37	18	56411707	56411707	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	146	605	0	ENST00000348428.3:c.1891T>C	p.Tyr631His	p.Y631H	ENST00000348428	NM_006785.3	631	Tac/Cac																																												NEWRECORD																																		
CCNE1	0	MSKCC	GRCh37	19	30313211	30313211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	82	638	0	ENST00000262643.3:c.905C>T	p.Ser302Leu	p.S302L	ENST00000262643	NM_001238.2	302	tCg/tTg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830450	72830450	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	95	559	0	ENST00000268489.5:c.6131del	p.Pro2044LeufsTer57	p.P2044Lfs*57	ENST00000268489	NM_006885.3	2044	cCt/ct																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12028648	12028650	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	65	541	1	ENST00000353533.5:c.854_856del	p.Asp285del	p.D285del	ENST00000353533	NM_003010.3	284	tATGat/tat																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3900401	3900401	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	132	432	0	ENST00000262367.5:c.695del	p.Gln232ArgfsTer12	p.Q232Rfs*12	ENST00000262367	NM_004380.2	232	cAg/cg																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202151254	202151254	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	110	632	0	ENST00000358485.4:c.1557delG	p.Lys520AsnfsTer10	p.K520Nfs*10	ENST00000358485	NM_001080125.1	518	atG/at																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151846107	151846107	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	98	384	0	ENST00000262189.6:c.12905del	p.Pro4302LeufsTer24	p.P4302Lfs*24	ENST00000262189	NM_170606.2	4302	cCt/ct																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434759	49434759	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	128	358	2	ENST00000301067.7:c.6794delG	p.Gly2265GlufsTer21	p.G2265Efs*21	ENST00000301067	NM_003482.3	2265	gGa/ga																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16082436	16082436	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	12	222	0	ENST00000281043.3:c.250G>C	p.Glu84Gln	p.E84Q	ENST00000281043	NM_005378.4	84	Gag/Cag																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11552761		P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	27	423	0	ENST00000418115.1:c.50G>C	p.Gly17Ala	p.G17A	ENST00000418115	NM_001664.2	17	gGa/gCa																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186505595	186505595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	107	399	0	ENST00000323963.5:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000323963		335	Cgc/Tgc																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176517758	176517758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	44	488	0	ENST00000292408.4:c.368C>G	p.Ser123Cys	p.S123C	ENST00000292408	NM_213647.1	123	tCc/tGc																																												NEWRECORD																																		
HIST1H3E	0	MSKCC	GRCh37	6	26225674	26225674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	78	708	0	ENST00000360408.1:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000360408	NM_003532.2	98	Gag/Cag																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8485282	8485282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	27	357	0	ENST00000356435.5:c.3098C>T	p.Ser1033Phe	p.S1033F	ENST00000356435		1033	tCc/tTc																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123276914	123276914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	31	304	0	ENST00000358487.5:c.1003G>C	p.Glu335Gln	p.E335Q	ENST00000358487	NM_000141.4	335	Gag/Cag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49445534	49445534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	10	117	0	ENST00000301067.7:c.1932G>A	p.Met644Ile	p.M644I	ENST00000301067	NM_003482.3	644	atG/atA																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112891189	112891189	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	17	211	0	ENST00000351677.2:c.523C>T	p.Gln175Ter	p.Q175*	ENST00000351677	NM_002834.3	175	Cag/Tag																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115114205	115114205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	29	389	0	ENST00000257566.3:c.1012G>A	p.Glu338Lys	p.E338K	ENST00000257566	NM_016569.3	338	Gag/Aag																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061264	38061264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	52	369	0	ENST00000250448.2:c.725C>A	p.Ser242Tyr	p.S242Y	ENST00000250448	NM_004496.3	242	tCc/tAc																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061283	38061283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	64	405	0	ENST00000250448.2:c.706G>A	p.Asp236Asn	p.D236N	ENST00000250448	NM_004496.3	236	Gac/Aac																																												NEWRECORD																																		
CD276	0	MSKCC	GRCh37	15	73996086	73996086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	14	370	1	ENST00000318443.5:c.820C>T	p.Pro274Ser	p.P274S	ENST00000318443	NM_001024736.1	274	Cct/Tct																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857558	9857558	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	16	192	0	ENST00000330684.3:c.3843G>C	p.Lys1281Asn	p.K1281N	ENST00000330684	NM_001134407.1	1281	aaG/aaC																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89341344	89341344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	15	267	0	ENST00000301030.4:c.7591G>C	p.Glu2531Gln	p.E2531Q	ENST00000301030	NM_001256183.1	2531	Gag/Cag																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643617	52643618	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	42	265	0	ENST00000394830.3:c.2278_2279insT	p.Arg760LeufsTer8	p.R760Lfs*8	ENST00000394830	NM_018313.4	760	cgc/cTgc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56489499	56489499	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	38	256	0	ENST00000267101.3:c.1967del	p.Phe656SerfsTer2	p.F656Sfs*2	ENST00000267101	NM_001982.3	655	aTt/at																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160638	56160638	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004908-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			759	228	512	0	ENST00000399503.3:c.914delA	p.Asn305ThrfsTer7	p.N305Tfs*7	ENST00000399503	NM_005921.1	304	acA/ac																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0004908-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			958	322	658	0	ENST00000269571.5:c.2332_2340dupGGCTCCCCA	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120880	115120880	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004908-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			498	157	355	0	ENST00000257566.3:c.126delC	p.Ala43ArgfsTer2	p.A43Rfs*2	ENST00000257566	NM_016569.3	42	ccC/cc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177598	56177620	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTATTGCAGATGAGGTGGAAA	GGCTATTGCAGATGAGGTGGAAA	-			P-0004908-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			634	233	455	0	ENST00000399503.3:c.2571_2593delGGCTATTGCAGATGAGGTGGAAA	p.Met857IlefsTer39	p.M857Ifs*39	ENST00000399503	NM_005921.1	857	atGGCTATTGCAGATGAGGTGGAAAtt/attt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	52	318	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111881621	111881621	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	80	344	0	ENST00000393256.3:c.299A>G	p.Asp100Gly	p.D100G	ENST00000393256	NM_006538.4	100	gAc/gGc																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143094874	143094874	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	52	638	0	ENST00000262992.4:c.1270A>T	p.Ile424Leu	p.I424L	ENST00000262992	NM_001101669.1	424	Ata/Tta																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73336102	73336102	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	31	436	1	ENST00000377767.4:c.2301A>T	p.Leu767Phe	p.L767F	ENST00000377767	NM_014953.3	767	ttA/ttT																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858784	9858784	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	26	275	0	ENST00000330684.3:c.2617G>T	p.Gly873Ter	p.G873*	ENST00000330684	NM_001134407.1	873	Gga/Tga																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15995212	15995213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	53	605	0	ENST00000268712.3:c.2980dup	p.Cys994LeufsTer24	p.C994Lfs*24	ENST00000268712	NM_006311.3	994	tgt/tTgt																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220707	1220708	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	110	323	1	ENST00000326873.7:c.725_726delinsTT	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGG/gTT																																												NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	429	705	3	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533904	63533904	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201460658		P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	242	422	1	ENST00000307078.5:c.1250C>T	p.Ala417Val	p.A417V	ENST00000307078	NM_004655.3	417	gCg/gTg																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	255	570	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																												NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	204	463	2	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	327	513	1	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																												NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	257	557	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142241619	142241619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	320	595	1	ENST00000350721.4:c.4217C>T	p.Ala1406Val	p.A1406V	ENST00000350721	NM_001184.3	1406	gCg/gTg																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	213	372	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																												NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	375	623	8	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																												NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	234	484	0	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53230752	53230752	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	459	406	2	ENST00000375401.3:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000375401	NM_004187.3	681	Cga/Tga																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38944623	38944623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	299	588	1	ENST00000357387.3:c.4838G>A	p.Arg1613His	p.R1613H	ENST00000357387	NM_152756.3	1613	cGc/cAc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44918622	44918622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	358	344	0	ENST00000377967.4:c.1105C>T	p.Gln369Ter	p.Q369*	ENST00000377967	NM_021140.2	369	Cag/Tag																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17124854	17124854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	348	561	1	ENST00000285071.4:c.868G>A	p.Ala290Thr	p.A290T	ENST00000285071	NM_144997.5	290	Gct/Act																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458420	120458420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	165	363	1	ENST00000256646.2:c.6925C>T	p.Leu2309Phe	p.L2309F	ENST00000256646	NM_024408.3	2309	Ctc/Ttc																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47656987	47656987	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	753	628	0	ENST00000233146.2:c.1183C>T	p.Gln395Ter	p.Q395*	ENST00000233146	NM_000251.2	395	Caa/Taa																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134968219	134968219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	321	562	2	ENST00000398015.3:c.2732C>T	p.Thr911Met	p.T911M	ENST00000398015	NM_004441.4	911	aCg/aTg																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138417934	138417934	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	156	302	0	ENST00000289153.2:c.1585C>T	p.Arg529Ter	p.R529*	ENST00000289153	NM_006219.2	529	Cga/Tga																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55973979	55973979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	288	585	2	ENST00000263923.4:c.1337C>T	p.Thr446Met	p.T446M	ENST00000263923	NM_002253.2	446	aCg/aTg																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150004616	150004616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150904756		P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	480	789	4	ENST00000253339.5:c.1609G>A	p.Ala537Thr	p.A537T	ENST00000253339		537	Gct/Act																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38275752	38275752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	374	569	1	ENST00000425967.3:c.1517G>A	p.Arg506Gln	p.R506Q	ENST00000425967	NM_001174067.1	506	cGg/cAg																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64132926	64132926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	408	589	0	ENST00000334205.4:c.1060C>T	p.Arg354Ter	p.R354*	ENST00000334205	NM_003942.2	354	Cga/Tga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108202231	108202231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	254	495	0	ENST00000278616.4:c.7576A>G	p.Arg2526Gly	p.R2526G	ENST00000278616	NM_000051.3	2526	Aga/Gga																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67479838	67479838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	386	543	0	ENST00000327367.4:c.1145C>T	p.Ala382Val	p.A382V	ENST00000327367	NM_005902.3	382	gCg/gTg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3788669	3788669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	299	578	0	ENST00000262367.5:c.4285G>A	p.Val1429Met	p.V1429M	ENST00000262367	NM_004380.2	1429	Gtg/Atg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72822363	72822363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	574	901	0	ENST00000268489.5:c.9812C>T	p.Thr3271Met	p.T3271M	ENST00000268489	NM_006885.3	3271	aCg/aTg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5244079	5244079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	147	731	0	ENST00000357368.4:c.1403C>T	p.Pro468Leu	p.P468L	ENST00000357368	NM_002850.3	468	cCg/cTg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11169019	11169019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	385	646	1	ENST00000344626.4:c.4513G>A	p.Val1505Met	p.V1505M	ENST00000344626	NM_003072.3	1505	Gtg/Atg																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18276986	18276986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	341	510	0	ENST00000222254.8:c.1433G>A	p.Arg478His	p.R478H	ENST00000222254	NM_005027.3	478	cGt/cAt																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40748487	40748487	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143335817		P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	382	637	1	ENST00000392038.2:c.395C>T	p.Thr132Met	p.T132M	ENST00000392038	NM_001626.4	132	aCg/aTg																																												NEWRECORD																																		
SRC	0	MSKCC	GRCh37	20	36030983	36030983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	305	473	0	ENST00000358208.4:c.1262C>T	p.Ala421Val	p.A421V	ENST00000358208		421	gCg/gTg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41489043	41489043	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	314	579	0	ENST00000263253.7:c.35C>A	p.Ser12Ter	p.S12*	ENST00000263253	NM_001429.3	12	tCa/tAa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123195552	123195648	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGTGGCATATAGGGAGAAGAAATAAGCTAACTCTTTCTGACTTTTTTTTTTTTTTTTTTTTTTTTTAGCACTAACAGATAGGCAAGAGAGTGCTCT	AAGTGGCATATAGGGAGAAGAAATAAGCTAACTCTTTCTGACTTTTTTTTTTTTTTTTTTTTTTTTTAGCACTAACAGATAGGCAAGAGAGTGCTCT	-			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			7	341	57	0	ENST00000218089.9:c.1535-69_1562del		p.X512_splice	ENST00000218089	NM_001042749.1	512																																													NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157405953	157405954	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	299	601	0	ENST00000346085.5:c.2201dup	p.Ser736IlefsTer27	p.S736Ifs*27	ENST00000346085	NM_020732.3	732	ccg/ccGg																																												NEWRECORD																																		
IKBKE	9641	MSKCC	GRCh37	1	206666428	206666428	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs66476220		P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	402	651	1	ENST00000367120.3:c.1912del	p.Val638SerfsTer31	p.V638Sfs*31	ENST00000367120	NM_014002.3	636	caG/ca																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420332	49420333	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	385	720	0	ENST00000301067.7:c.15416dup	p.Pro5141AlafsTer3	p.P5141Afs*3	ENST00000301067	NM_003482.3	5139	aag/aaAg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100934	27100934	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	288	524	0	ENST00000324856.7:c.4220del	p.Pro1407GlnfsTer74	p.P1407Qfs*74	ENST00000324856	NM_006015.4	1406	Ccc/cc																																												NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38512401	38512402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs745553450		P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	202	446	2	ENST00000254066.5:c.1319dup	p.Pro441AlafsTer5	p.P441Afs*5	ENST00000254066	NM_000964.3	438	gcc/gCcc																																												NEWRECORD																																		
RYBP	0	MSKCC	GRCh37	3	72428510	72428510	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	260	450	0	ENST00000477973.2:c.492del	p.Pro165LeufsTer43	p.P165Lfs*43	ENST00000477973	NM_012234.5	165	cCt/ct																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67645499	67645500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	212	339	1	ENST00000264010.4:c.769dup	p.Ile257AsnfsTer2	p.I257Nfs*2	ENST00000264010	NM_006565.3	255	aca/acAa																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91295028	91295030	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0005842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	267	585	0	ENST00000355112.3:c.819_821del	p.Lys273del	p.K273del	ENST00000355112	NM_000057.2	271	AAG/-																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916933	178916933	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	267	470	0	ENST00000263967.3:c.320A>T	p.Asn107Ile	p.N107I	ENST00000263967	NM_006218.2	107	aAc/aTc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68844247	68844247	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	G			P-0014785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	241	474	0	ENST00000261769.5:c.832+3A>G		p.X278_splice	ENST00000261769	NM_004360.3	278																																													NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49037933	49037934	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	272	501	0	ENST00000267163.4:c.2174dup	p.Thr726AsnfsTer25	p.T726Nfs*25	ENST00000267163	NM_000321.2	725	gta/gTta																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16089929	16089940	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	GCTGTTGCTGCA	GCTGTTGCTGCA	-			P-0014785-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	211	433	1	ENST00000268712.3:c.170_181del	p.Leu57_Gln61delinsTer	p.L57_Q61delins*	ENST00000268712	NM_006311.3	57	tTGCAGCAACAGCag/tag																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001094-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	35	313	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70344853	70344853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001094-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	26	959	0	ENST00000374080.3:c.2083G>A	p.Gly695Arg	p.G695R	ENST00000374080		695	Ggg/Agg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591125	67591126	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAGAAAGAC			P-0001094-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	36	279	0	ENST00000274335.5:c.1723_1731dup	p.Lys575_Arg577dup	p.K575_R577dup	ENST00000274335		575	ctg/ctGAGAAAGACg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023329	27023330	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	A			P-0001094-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			144	10	50	0	ENST00000324856.7:c.435_436delinsA	p.Pro146GlnfsTer86	p.P146Qfs*86	ENST00000324856	NM_006015.4	145	ccCCca/ccAca																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	348	516	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	247	402	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156837898	156837898	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	182	332	1	ENST00000524377.1:c.431T>C	p.Val144Ala	p.V144A	ENST00000524377	NM_002529.3	144	gTc/gCc																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243716032	243716032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	280	254	0	ENST00000263826.5:c.1162C>T	p.Arg388Cys	p.R388C	ENST00000263826	NM_005465.4	388	Cgc/Tgc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189590774	189590774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	122	367	0	ENST00000264731.3:c.1339C>T	p.Leu447Phe	p.L447F	ENST00000264731	NM_003722.4	447	Ctt/Ttt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89653805	89653805	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	95	266	0	ENST00000371953.3:c.103A>T	p.Met35Leu	p.M35L	ENST00000371953	NM_000314.4	35	Atg/Ttg																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67670736	67670736	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	207	357	0	ENST00000264010.4:c.1981C>G	p.Gln661Glu	p.Q661E	ENST00000264010	NM_006565.3	661	Cag/Gag																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31023720	31023720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	66	309	0	ENST00000375687.4:c.3205G>T	p.Val1069Leu	p.V1069L	ENST00000375687	NM_015338.5	1069	Gta/Tta																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31386367	31386367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	199	342	0	ENST00000328111.2:c.1592G>A	p.Arg531His	p.R531H	ENST00000328111	NM_006892.3	531	cGc/cAc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175749	112175750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	88	206	0	ENST00000257430.4:c.4459dup	p.Thr1487AsnfsTer27	p.T1487Nfs*27	ENST00000257430	NM_000038.5	1486	-/A																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204511954	204511954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	148	360	0	ENST00000367182.3:c.554G>T	p.Arg185Met	p.R185M	ENST00000367182	NM_001278516.1	185	aGg/aTg																																												NEWRECORD																																		
CXCR4	0	MSKCC	GRCh37	2	136873449	136873449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	374	752	0	ENST00000241393.3:c.49G>T	p.Gly17Cys	p.G17C	ENST00000241393	NM_003467.2	17	Ggc/Tgc																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94120524	94120524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	282	675	1	ENST00000369303.4:c.527C>T	p.Pro176Leu	p.P176L	ENST00000369303	NM_004440.3	176	cCt/cTt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	184	362	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	155	356	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610160	10610160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	34	383	0	ENST00000171111.5:c.550G>A	p.Ala184Thr	p.A184T	ENST00000171111	NM_203500.1	184	Gcc/Acc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045501	47045501	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	252	229	1	ENST00000329236.7:c.2237del	p.Lys746SerfsTer23	p.K746Sfs*23	ENST00000329236	NM_001204466.1	745	gAa/ga																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151945045	151945045	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	TT			P-0008485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	30	220	0	ENST00000262189.6:c.2474delinsAA	p.Met825LysfsTer3	p.M825Kfs*3	ENST00000262189	NM_170606.2	825	aTg/aAAg																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0007305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	118	299	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	44	380	0	ENST00000269305.4:c.706T>G	p.Tyr236Asp	p.Y236D	ENST00000269305	NM_001126112.2	236	Tac/Gac																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56161171	56161171	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	45	356	0	ENST00000399503.3:c.1040G>T	p.Cys347Phe	p.C347F	ENST00000399503	NM_005921.1	347	tGc/tTc																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12022609	12022609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	58	390	0	ENST00000396373.4:c.715C>T	p.Pro239Ser	p.P239S	ENST00000396373	NM_001987.4	239	Ccc/Tcc																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120175	70120175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	29	222	0	ENST00000245479.2:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000245479	NM_000346.3	393	Cag/Tag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112155031	112155032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	29	374	0	ENST00000257430.4:c.1307dup	p.Asn436LysfsTer8	p.N436Kfs*8	ENST00000257430	NM_000038.5	434	-/A																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	226	235	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	643	442	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	292	528	2	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175749	112175750	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	427	323	0	ENST00000257430.4:c.4459dup	p.Thr1487AsnfsTer27	p.T1487Nfs*27	ENST00000257430	NM_000038.5	1486	-/A																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95557639	95557639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	599	463	0	ENST00000343455.3:c.5428G>A	p.Asp1810Asn	p.D1810N	ENST00000343455	NM_177438.2	1810	Gat/Aat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	353	288	0	ENST00000269305.4:c.97-1G>C		p.X33_splice	ENST00000269305	NM_001126112.2	33																																													NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66729175	66729175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	487	353	0	ENST00000307102.5:c.383G>T	p.Gly128Val	p.G128V	ENST00000307102	NM_002755.3	128	gGc/gTc																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78938074	78938074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	591	447	0	ENST00000306801.3:c.3952G>A	p.Val1318Met	p.V1318M	ENST00000306801	NM_020761.2	1318	Gtg/Atg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11101830	11101830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	170	406	0	ENST00000344626.4:c.1250G>A	p.Arg417His	p.R417H	ENST00000344626	NM_003072.3	417	cGc/cAc																																												NEWRECORD																																		
MAP2K2	0	MSKCC	GRCh37	19	4099253	4099255	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0008133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	572	437	0	ENST00000262948.5:c.863_865del	p.Glu288del	p.E288del	ENST00000262948	NM_030662.3	288	gAAGga/gga																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	96	598	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0014650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			995	102	570	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	37	358	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67660469	67660469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	62	425	2	ENST00000264010.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000264010	NM_006565.3	457	Cga/Tga																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	65	473	0	ENST00000371953.3:c.275A>T	p.Asp92Val	p.D92V	ENST00000371953	NM_000314.4	92	gAc/gTc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101005	27101005	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1171	86	765	0	ENST00000324856.7:c.4288delC	p.Gln1430SerfsTer51	p.Q1430Sfs*51	ENST00000324856	NM_006015.4	1429	aaC/aa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105904	27105905	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0014650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	83	617	0	ENST00000324856.7:c.5515_5516delAG	p.Ser1839TrpfsTer14	p.S1839Wfs*14	ENST00000324856	NM_006015.4	1839	AGt/t																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40476777	40476777	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1287	91	758	1	ENST00000264657.5:c.1552C>T	p.Arg518Ter	p.R518*	ENST00000264657	NM_139276.2	518	Cga/Tga																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39573265	39573265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014650-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	47	474	0	ENST00000262039.4:c.746G>A	p.Ser249Asn	p.S249N	ENST00000262039	NM_002647.2	249	aGt/aAt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	115	528	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578552	7578553	+	stop_gained,splice_region_variant	Nonsense_Mutation	INS	-	-	TAC			P-0014252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	284	1404	1	ENST00000269305.4:c.376-1_377dup	p.Thr125_Tyr126insTer	p.T125_Y126ins*	ENST00000269305	NM_001126112.2	126	tac/taGTAc																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259362	89259362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	100	451	0	ENST00000336596.2:c.506G>A	p.Arg169Lys	p.R169K	ENST00000336596	NM_005233.5	169	aGa/aAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175759	112175760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0014252-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	167	269	0	ENST00000257430.4:c.4469_4470insAA	p.His1490GlnfsTer18	p.H1490Qfs*18	ENST00000257430	NM_000038.5	1490	cat/cAAat																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	329	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	91	522	1	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	166	602	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974782	21974783	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAGT			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	42	279	0	ENST00000304494.5:c.41_44dup	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgg/tgACTGg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974782	21974783	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CAGT			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	42	279	0	ENST00000304494.5:c.41_44dup	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgg/tgACTGg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16256670	16256670	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	79	438	0	ENST00000375759.3:c.3935A>T	p.Tyr1312Phe	p.Y1312F	ENST00000375759	NM_015001.2	1312	tAt/tTt																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	175996746	175996746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	103	651	2	ENST00000367669.3:c.1691G>A	p.Ser564Asn	p.S564N	ENST00000367669	NM_022457.5	564	aGc/aAc																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25965535	25965535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	172	595	0	ENST00000435504.4:c.3671A>G	p.Asp1224Gly	p.D1224G	ENST00000435504		1224	gAt/gGt																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266898	41266898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	85	555	0	ENST00000349496.5:c.569G>A	p.Arg190His	p.R190H	ENST00000349496	NM_001904.3	190	cGt/cAt																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49722927	49722927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	41	250	0	ENST00000449682.2:c.1400C>T	p.Pro467Leu	p.P467L	ENST00000449682	NM_020998.3	467	cCg/cTg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160715	56160715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	92	566	0	ENST00000399503.3:c.989G>C	p.Gly330Ala	p.G330A	ENST00000399503	NM_005921.1	330	gGa/gCa																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180043926	180043926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	186	597	1	ENST00000261937.6:c.3070G>A	p.Gly1024Arg	p.G1024R	ENST00000261937	NM_182925.4	1024	Ggg/Agg																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50459536	50459536	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	55	404	0	ENST00000331340.3:c.825G>C	p.Lys275Asn	p.K275N	ENST00000331340	NM_006060.4	275	aaG/aaC																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69218405	69218405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	97	560	0	ENST00000462284.1:c.497C>T	p.Ser166Phe	p.S166F	ENST00000462284	NM_002392.5	166	tCt/tTt																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119945	70119945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	62	320	0	ENST00000245479.2:c.947C>A	p.Thr316Lys	p.T316K	ENST00000245479	NM_000346.3	316	aCg/aAg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974678	21974684	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGGATCG	TGGATCG	-			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	65	421	0	ENST00000304494.5:c.143_149del	p.Pro48ArgfsTer3	p.P48Rfs*3	ENST00000304494	NM_000077.4	48	cCGATCCAg/cg																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15935625	15935626	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0005282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	66	424	0	ENST00000268712.3:c.7307_7308del	p.Ser2436Ter	p.S2436*	ENST00000268712	NM_006311.3	2436	tCG/t																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	238	279	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	221	350	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023633	27023634	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCGGCTC			P-0007062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	59	132	0	ENST00000324856.7:c.741_747dup	p.Lys250ArgfsTer152	p.K250Rfs*152	ENST00000324856	NM_006015.4	247	gcc/gCCGGCTCcc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	67	279	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176522416	176522416	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	123	401	0	ENST00000292408.4:c.1605C>G	p.Asn535Lys	p.N535K	ENST00000292408	NM_213647.1	535	aaC/aaG																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4388046	4388046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	77	265	0	ENST00000261254.3:c.532C>T	p.Arg178Cys	p.R178C	ENST00000261254	NM_001759.3	178	Cgc/Tgc																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45856520	45856520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	108	577	0	ENST00000391945.4:c.1738G>A	p.Ala580Thr	p.A580T	ENST00000391945	NM_000400.3	580	Gcc/Acc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68862134	68862135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	115	560	0	ENST00000261769.5:c.2223dup	p.Leu742ThrfsTer6	p.L742Tfs*6	ENST00000261769	NM_004360.3	741	tta/ttAa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	83	462	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10286275	10286275	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	85	481	0	ENST00000340748.4:c.541C>G	p.Gln181Glu	p.Q181E	ENST00000340748		181	Cag/Gag																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56179366	56179367	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	82	426	0	ENST00000399503.3:c.3680dup	p.Pro1228ThrfsTer11	p.P1228Tfs*11	ENST00000399503	NM_005921.1	1227	cta/cTta																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842631	68842632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	112	588	0	ENST00000261769.5:c.568dupT	p.Tyr190LeufsTer9	p.Y190Lfs*9	ENST00000261769	NM_004360.3	189	-/T																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117962	70117963	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0007860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	11	167	0	ENST00000245479.2:c.431+1dup		p.R144fs	ENST00000245479	NM_000346.3	144	aga/aGga																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	96	140	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12044463	12044463	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	71	252	0	ENST00000353533.5:c.1087-1G>A		p.X363_splice	ENST00000353533	NM_003010.3	363																																													NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17950348	17950348	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199659728		P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			800	192	526	0	ENST00000458235.1:c.1379G>A	p.Gly460Glu	p.G460E	ENST00000458235	NM_000215.3	460	gGg/gAg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101053	27101053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			806	69	617	0	ENST00000324856.7:c.4336del	p.Arg1446AspfsTer35	p.R1446Dfs*35	ENST00000324856	NM_006015.4	1445	cgC/cg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105617	27105618	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTT			P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			792	89	547	0	ENST00000324856.7:c.5231_5232insTGCT	p.Leu1745AlafsTer12	p.L1745Afs*12	ENST00000324856	NM_006015.4	1743	acg/acGCTTg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70404556	70404558	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	189	474	0	ENST00000373644.4:c.2071_2073del	p.Thr691del	p.T691del	ENST00000373644	NM_030625.2	690	caTACt/cat																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68847226	68847227	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001212-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	196	375	0	ENST00000261769.5:c.1150dup	p.Val384GlyfsTer3	p.V384Gfs*3	ENST00000261769	NM_004360.3	383	cag/caGg																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0012459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	487	495	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435311	18435311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	411	414	0	ENST00000266497.5:c.296A>T	p.His99Leu	p.H99L	ENST00000266497		99	cAt/cTt																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41991140	41991141	+	splice_donor_variant	Splice_Site	DEL	GT	GT	-			P-0012459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	564	493	0	ENST00000219905.7:c.2092+1_2092+2del		p.X698_splice	ENST00000219905	NM_001164273.1	698																																													NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	38	257	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	81	331	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																													NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88420315	88420315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	33	209	1	ENST00000360948.2:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000360948	NM_001012338.2	791	Cgg/Tgg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187516908	187516908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	133	369	0	ENST00000441802.2:c.13073C>T	p.Ala4358Val	p.A4358V	ENST00000441802	NM_005245.3	4358	gCc/gTc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	44	322	0	ENST00000257430.4:c.2805C>G	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taG																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152265596	152265596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	60	213	0	ENST00000206249.3:c.1049C>A	p.Ala350Glu	p.A350E	ENST00000206249	NM_000125.3	350	gCa/gAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112154680	112154681	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	54	257	0	ENST00000257430.4:c.953dup	p.Leu318PhefsTer9	p.L318Ffs*9	ENST00000257430	NM_000038.5	317	-/T																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	48	486	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25965020	25965020	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	45	447	0	ENST00000435504.4:c.4186A>T	p.Thr1396Ser	p.T1396S	ENST00000435504		1396	Acg/Tcg																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227663063	227663063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	19	384	0	ENST00000305123.5:c.392G>T	p.Gly131Val	p.G131V	ENST00000305123	NM_005544.2	131	gGt/gTt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175871	112175871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	28	389	0	ENST00000257430.4:c.4580C>T	p.Pro1527Leu	p.P1527L	ENST00000257430	NM_000038.5	1527	cCa/cTa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176562463	176562463	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	30	515	0	ENST00000439151.2:c.359G>C	p.Gly120Ala	p.G120A	ENST00000439151	NM_022455.4	120	gGt/gCt																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20481467	20481467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	34	348	0	ENST00000346618.3:c.536A>G	p.Tyr179Cys	p.Y179C	ENST00000346618	NM_001949.4	179	tAt/tGt																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88679195	88679195	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	14	276	0	ENST00000372037.3:c.1135G>C	p.Ala379Pro	p.A379P	ENST00000372037	NM_004329.2	379	Gct/Cct																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112302	115112302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	11	82	0	ENST00000257566.3:c.1438G>T	p.Ala480Ser	p.A480S	ENST00000257566	NM_016569.3	480	Gcg/Tcg																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110436013	110436013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	13	260	0	ENST00000375856.3:c.2388G>T	p.Arg796Ser	p.R796S	ENST00000375856	NM_003749.2	796	agG/agT																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95560464	95560464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	13	173	0	ENST00000343455.3:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000343455	NM_177438.2	1709	Gat/Aat																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88483977	88483977	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	22	384	0	ENST00000360948.2:c.1593G>C	p.Gln531His	p.Q531H	ENST00000360948	NM_001012338.2	531	caG/caC																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59761283	59761283	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	39	566	0	ENST00000259008.2:c.3124G>T	p.Glu1042Ter	p.E1042*	ENST00000259008	NM_032043.2	1042	Gaa/Taa																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207146	1207146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	47	346	0	ENST00000326873.7:c.234G>T	p.Lys78Asn	p.K78N	ENST00000326873	NM_000455.4	78	aaG/aaT																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10599888	10599888	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	38	603	0	ENST00000171111.5:c.1688A>G	p.Gln563Arg	p.Q563R	ENST00000171111	NM_203500.1	563	cAg/cGg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602446	10602446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	32	385	0	ENST00000171111.5:c.1132G>T	p.Gly378Cys	p.G378C	ENST00000171111	NM_203500.1	378	Ggc/Tgc																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9525015	9525015	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	23	422	0	ENST00000353224.5:c.1869+1G>A		p.X623_splice	ENST00000353224	NM_177990.2	623																																													NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47044901	47044901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	36	221	0	ENST00000329236.7:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000329236	NM_001204466.1	665	Gag/Tag																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70360537	70360537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	54	320	0	ENST00000374080.3:c.6097A>G	p.Met2033Val	p.M2033V	ENST00000374080		2033	Atg/Gtg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10599883	10599884	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	42	590	0	ENST00000171111.5:c.1692_1693insT	p.Arg565Ter	p.R565*	ENST00000171111	NM_203500.1	564	-/T																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5055702	5055703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	28	391	0	ENST00000381652.3:c.972dup	p.Asp325Ter	p.D325*	ENST00000381652	NM_004972.3	324	att/aTtt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	298	423	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38318622	38318622	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	198	542	0	ENST00000425967.3:c.3G>T	p.Met1?	p.M1?	ENST00000425967	NM_001174067.1	1	atG/atT																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89845359	89845359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	356	595	0	ENST00000389301.3:c.1768C>A	p.Pro590Thr	p.P590T	ENST00000389301	NM_000135.2	590	Cct/Act																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44942737	44942737	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	481	681	0	ENST00000377967.4:c.3317T>G	p.Leu1106Arg	p.L1106R	ENST00000377967	NM_021140.2	1106	cTt/cGt																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	404892	404893	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	435	561	0	ENST00000399788.2:c.4301_4302insTT	p.Leu1435CysfsTer16	p.L1435Cfs*16	ENST00000399788	NM_001042603.1	1434	gtg/gtTTg																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	404908	404912	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCG	CTTCG	-			P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	408	549	0	ENST00000399788.2:c.4282_4286del	p.Arg1428PhefsTer13	p.R1428Ffs*13	ENST00000399788	NM_001042603.1	1428	CGAAGt/t																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	404900	404902	+	frameshift_variant	Frame_Shift_Del	DEL	GTT	GTT	CA			P-0010824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	427	550	0	ENST00000399788.2:c.4292_4294delinsTG	p.Glu1431ValfsTer19	p.E1431Vfs*19	ENST00000399788	NM_001042603.1	1431	gAACct/gTGct																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11217304	11217305	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCCTCCCACTCG			P-0006020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	83	612	0	ENST00000361445.4:c.4362_4373dup	p.Glu1455_Asp1458dup	p.E1455_D1458dup	ENST00000361445	NM_004958.3	1455	gat/gaCGAGTGGGAGGAt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	220	543	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	240	592	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15291527	15291527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	187	720	0	ENST00000263388.2:c.3107G>A	p.Arg1036Gln	p.R1036Q	ENST00000263388	NM_000435.2	1036	cGa/cAa																																												NEWRECORD																																		
MYD88	0	MSKCC	GRCh37	3	38181926	38181926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	55	575	1	ENST00000396334.3:c.550G>A	p.Asp184Asn	p.D184N	ENST00000396334	NM_002468.4	184	Gac/Aac																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152332882	152332882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	224	607	0	ENST00000206249.3:c.1188G>A	p.Met396Ile	p.M396I	ENST00000206249	NM_000125.3	396	atG/atA																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101014	27101028	+	inframe_deletion	In_Frame_Del	DEL	CAATGCCTATCCTGC	CAATGCCTATCCTGC	-			P-0013395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	202	677	0	ENST00000324856.7:c.4298_4312del	p.Asn1433_Ala1437del	p.N1433_A1437del	ENST00000324856	NM_006015.4	1432	ggCAATGCCTATCCTGCc/ggc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	60	430	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	23	249	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717674	89717675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	54	439	0	ENST00000371953.3:c.700dup	p.Arg234ProfsTer9	p.R234Pfs*9	ENST00000371953	NM_000314.4	233	-/C																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	37	521	0	ENST00000288602.6:c.1391G>T	p.Gly464Val	p.G464V	ENST00000288602	NM_004333.4	464	gGa/gTa																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31023732	31023732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	71	499	0	ENST00000375687.4:c.3217C>T	p.Arg1073Cys	p.R1073C	ENST00000375687	NM_015338.5	1073	Cgc/Tgc																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46509469	46509469	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs200277706		P-0008998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	51	421	0	ENST00000262741.5:c.1262T>C	p.Leu421Pro	p.L421P	ENST00000262741	NM_003629.3	421	cTg/cCg																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180053236	180053236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	96	548	0	ENST00000261937.6:c.1133G>T	p.Arg378Leu	p.R378L	ENST00000261937	NM_182925.4	378	cGc/cTc																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46264108	46264108	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	95	674	0	ENST00000371998.3:c.1155A>C	p.Gln385His	p.Q385H	ENST00000371998		385	caA/caC																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692858	89692867	+	frameshift_variant	Frame_Shift_Del	DEL	AGATGACAAT	AGATGACAAT	-			P-0008998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	16	129	0	ENST00000371953.3:c.342_351del	p.Glu114AspfsTer17	p.E114Dfs*17	ENST00000371953	NM_000314.4	114	gaAGATGACAAT/ga																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49443634	49443634	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112921115		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	171	624	0	ENST00000301067.7:c.3737C>T	p.Thr1246Met	p.T1246M	ENST00000301067	NM_003482.3	1246	aCg/aTg																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	146	463	3	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	27	215	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	77	360	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	179	346	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	216	589	4	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	189	591	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	187	543	2	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																												NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	134	420	2	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																												NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	47	378	1	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63851054	63851054	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs117757404		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	100	289	0	ENST00000279873.7:c.1832C>T	p.Thr611Met	p.T611M	ENST00000279873	NM_032199.2	611	aCg/aTg																																												NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	49	123	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577091	7577091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149633775		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	248	722	0	ENST00000269305.4:c.847C>T	p.Arg283Cys	p.R283C	ENST00000269305	NM_001126112.2	283	Cgc/Tgc																																												NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	164	471	6	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																												NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	139	508	4	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	36882049	36882050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	204	607	0	ENST00000358127.4:c.963dupC	p.Ala322ArgfsTer19	p.A322Rfs*19	ENST00000358127	NM_001280556.1	321	-/C																																												NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47144880	47144880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	87	482	3	ENST00000409792.3:c.4873C>T	p.Arg1625Cys	p.R1625C	ENST00000409792	NM_014159.6	1625	Cgt/Tgt																																												NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	115	413	5	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	227	574	1	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																												NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	144	563	10	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	151	654	1	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42794655	42794655	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	194	569	1	ENST00000575354.2:c.1739del	p.Gly580ValfsTer148	p.G580Vfs*148	ENST00000575354	NM_015125.3	579	Ggg/gg																																												NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67063359	67063359	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	217	539	0	ENST00000412916.2:c.54del	p.Phe18LeufsTer4	p.F18Lfs*4	ENST00000412916		17	Ttt/tt																																												NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69625159	69625159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	185	617	2	ENST00000334134.2:c.634C>T	p.Arg212Trp	p.R212W	ENST00000334134	NM_005247.2	212	Cgg/Tgg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100499	8100499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	242	799	0	ENST00000346208.3:c.473C>T	p.Pro158Leu	p.P158L	ENST00000346208		158	cCg/cTg																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206649566	206649566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	154	340	0	ENST00000367120.3:c.401G>A	p.Arg134His	p.R134H	ENST00000367120	NM_014002.3	134	cGc/cAc																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111921803	111921803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	154	441	1	ENST00000393256.3:c.592C>T	p.His198Tyr	p.H198Y	ENST00000393256	NM_006538.4	198	Cat/Tat																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12641190	12641190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	222	755	3	ENST00000251849.4:c.1108G>A	p.Gly370Arg	p.G370R	ENST00000251849	NM_002880.3	370	Gga/Aga																																												NEWRECORD																																		
MYD88	0	MSKCC	GRCh37	3	38182749	38182749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	197	530	1	ENST00000396334.3:c.902G>A	p.Arg301His	p.R301H	ENST00000396334	NM_002468.4	301	cGc/cAc																																												NEWRECORD																																		
SOX2	0	MSKCC	GRCh37	3	181431077	181431077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	77	224	0	ENST00000325404.1:c.929G>A	p.Gly310Asp	p.G310D	ENST00000325404	NM_003106.3	310	gGc/gAc																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185155325	185155325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	227	576	0	ENST00000265026.3:c.566C>T	p.Ala189Val	p.A189V	ENST00000265026	NM_004721.4	189	gCg/gTg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66356134	66356134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	279	530	0	ENST00000273854.3:c.1363C>T	p.Arg455Trp	p.R455W	ENST00000273854	NM_004439.5	455	Cgg/Tgg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187540977	187540977	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200488891		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	87	284	0	ENST00000441802.2:c.6763C>T	p.Arg2255Cys	p.R2255C	ENST00000441802	NM_005245.3	2255	Cgc/Tgc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177001	112177001	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	70	635	0	ENST00000257430.4:c.5710C>T	p.Gln1904Ter	p.Q1904*	ENST00000257430	NM_000038.5	1904	Caa/Taa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176638513	176638513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	145	386	0	ENST00000439151.2:c.3113T>C	p.Met1038Thr	p.M1038T	ENST00000439151	NM_022455.4	1038	aTg/aCg																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162683613	162683613	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	158	516	0	ENST00000366898.1:c.356T>G	p.Leu119Arg	p.L119R	ENST00000366898	NM_004562.2	119	cTg/cGg																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90983457	90983457	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	65	365	0	ENST00000265433.3:c.646C>T	p.Gln216Ter	p.Q216*	ENST00000265433	NM_002485.4	216	Cag/Tag																																												NEWRECORD																																		
TRAF2	0	MSKCC	GRCh37	9	139820166	139820166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1368	346	1103	2	ENST00000247668.2:c.1319G>A	p.Arg440Gln	p.R440Q	ENST00000247668	NM_021138.3	440	cGg/cAg																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114724330	114724330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	242	946	0	ENST00000543371.1:c.397G>A	p.Gly133Ser	p.G133S	ENST00000543371	NM_001198531.1	133	Ggc/Agc																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2161445	2161445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	207	964	0	ENST00000434045.2:c.82G>A	p.Gly28Arg	p.G28R	ENST00000434045	NM_001127598.1	28	Ggg/Agg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246417	46246417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	140	601	1	ENST00000334344.6:c.4511G>A	p.Arg1504Gln	p.R1504Q	ENST00000334344	NM_152641.2	1504	cGg/cAg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112071	115112071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	216	621	0	ENST00000257566.3:c.1669G>A	p.Asp557Asn	p.D557N	ENST00000257566	NM_016569.3	557	Gat/Aat																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21563012	21563012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	203	488	2	ENST00000382592.4:c.907G>A	p.Ala303Thr	p.A303T	ENST00000382592	NM_014572.2	303	Gct/Act																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435111	110435111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	115	316	1	ENST00000375856.3:c.3290G>A	p.Arg1097His	p.R1097H	ENST00000375856	NM_003749.2	1097	cGc/cAc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88679209	88679209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	92	564	0	ENST00000360948.2:c.828G>T	p.Glu276Asp	p.E276D	ENST00000360948	NM_001012338.2	276	gaG/gaT																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12032460	12032460	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	31	340	0	ENST00000353533.5:c.896A>T	p.Glu299Val	p.E299V	ENST00000353533	NM_003010.3	299	gAg/gTg																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16024509	16024509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	271	712	1	ENST00000268712.3:c.1709G>A	p.Arg570Gln	p.R570Q	ENST00000268712	NM_006311.3	570	cGg/cAg																																												NEWRECORD																																		
STAT5A	0	MSKCC	GRCh37	17	40459708	40459708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1519	444	1151	2	ENST00000345506.4:c.1873G>A	p.Gly625Arg	p.G625R	ENST00000345506	NM_003152.3	625	Ggg/Agg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5214666	5214666	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116660613		P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	252	730	1	ENST00000357368.4:c.4400C>T	p.Pro1467Leu	p.P1467L	ENST00000357368	NM_002850.3	1467	cCg/cTg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40828020	40828020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	95	311	0	ENST00000373198.4:c.2408C>T	p.Ala803Val	p.A803V	ENST00000373198	NM_133170.3	803	gCc/gTc																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29130573	29130573	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	128	643	0	ENST00000328354.6:c.137T>C	p.Met46Thr	p.M46T	ENST00000328354	NM_007194.3	46	aTg/aCg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44949103	44949103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	93	823	2	ENST00000377967.4:c.3664G>A	p.Ala1222Thr	p.A1222T	ENST00000377967	NM_021140.2	1222	Gca/Aca																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123190046	123190046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	150	771	1	ENST00000218089.9:c.1265G>A	p.Arg422Gln	p.R422Q	ENST00000218089	NM_001042749.1	422	cGg/cAg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133252023	133252024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1154	233	689	0	ENST00000320574.5:c.1186dup	p.Glu396GlyfsTer28	p.E396Gfs*28	ENST00000320574	NM_006231.2	396	gag/gGag																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	402224	402225	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	208	973	1	ENST00000399788.2:c.4566_4567del	p.Lys1523ValfsTer11	p.K1523Vfs*11	ENST00000399788	NM_001042603.1	1522	caGAag/caag																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63845615	63845618	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	74	272	1	ENST00000279873.7:c.1360_1363del	p.Glu454LysfsTer24	p.E454Kfs*24	ENST00000279873	NM_032199.2	452	AAGAaa/aa																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47639646	47639646	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	86	463	0	ENST00000233146.2:c.740del	p.Gly247AlafsTer7	p.G247Afs*7	ENST00000233146	NM_000251.2	247	Ggc/gc																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40477076	40477076	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	306	882	0	ENST00000264657.5:c.1369del	p.His457ThrfsTer7	p.H457Tfs*7	ENST00000264657	NM_139276.2	457	Cac/ac																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16257132	16257133	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	70	501	0	ENST00000375759.3:c.4399dup	p.Trp1467LeufsTer14	p.W1467Lfs*14	ENST00000375759	NM_015001.2	1466	gat/gaTt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	103	540	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	97	378	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	43	672	0	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2946355	2946355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	69	637	1	ENST00000396946.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000396946	NM_032415.4	1128	Gta/Ata																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150001244	150001244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	185	622	0	ENST00000253339.5:c.2360G>A	p.Gly787Glu	p.G787E	ENST00000253339		787	gGg/gAg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398287	25398288	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTC			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	157	489	0	ENST00000256078.4:c.29_31dup	p.Gly10dup	p.G10dup	ENST00000256078	NM_033360.2	10	gct/gGAGct																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56839482	56839482	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	70	841	0	ENST00000308159.5:c.427C>T	p.Arg143Ter	p.R143*	ENST00000308159	NM_014669.4	143	Cga/Tga																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828308	72828308	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	153	928	0	ENST00000268489.5:c.8273T>G	p.Leu2758Arg	p.L2758R	ENST00000268489	NM_006885.3	2758	cTc/cGc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578220	7578220	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	109	709	0	ENST00000269305.4:c.629del	p.Asn210ThrfsTer37	p.N210Tfs*37	ENST00000269305	NM_001126112.2	210	aAc/ac																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180041175	180041175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	106	542	0	ENST00000261937.6:c.3224G>A	p.Arg1075Gln	p.R1075Q	ENST00000261937	NM_182925.4	1075	cGg/cAg																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112017620	112017620	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	52	815	0	ENST00000368678.4:c.893T>G	p.Leu298Arg	p.L298R	ENST00000368678		298	cTt/cGt																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47040969	47040970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCT			P-0013784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	104	588	0	ENST00000329236.7:c.1267_1270dup	p.Gly424AlafsTer17	p.G424Afs*17	ENST00000329236	NM_001204466.1	422	cag/caGCCTg																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	16	226	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43596014	43596014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	120	397	1	ENST00000355710.3:c.181G>A	p.Glu61Lys	p.E61K	ENST00000355710	NM_020975.4	61	Gag/Aag																																												NEWRECORD																																		
PHOX2B	0	MSKCC	GRCh37	4	41748290	41748290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	48	340	1	ENST00000226382.2:c.479C>T	p.Ala160Val	p.A160V	ENST00000226382	NM_003924.3	160	gCg/gTg																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225370756	225370756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	79	435	0	ENST00000264414.4:c.1123G>C	p.Glu375Gln	p.E375Q	ENST00000264414	NM_003590.4	375	Gag/Cag																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47006898	47006898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	106	177	0	ENST00000329236.7:c.17+1G>T		p.X6_splice	ENST00000329236	NM_001204466.1	6																																													NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10599904	10599904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	261	467	0	ENST00000171111.5:c.1672G>A	p.Gly558Arg	p.G558R	ENST00000171111	NM_203500.1	558	Ggg/Agg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11308012	11308012	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	124	472	0	ENST00000361445.4:c.980C>G	p.Ser327Ter	p.S327*	ENST00000361445	NM_004958.3	327	tCa/tGa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057850	27057850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	266	605	0	ENST00000324856.7:c.1558C>T	p.Gln520Ter	p.Q520*	ENST00000324856	NM_006015.4	520	Cag/Tag																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178095755	178095755	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	94	450	0	ENST00000397062.3:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000397062	NM_006164.4	526	Gag/Cag																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225342976	225342976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1624	156	672	0	ENST00000264414.4:c.2116G>T	p.Ala706Ser	p.A706S	ENST00000264414	NM_003590.4	706	Gct/Tct																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227661011	227661011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	180	330	0	ENST00000305123.5:c.2444G>T	p.Ser815Ile	p.S815I	ENST00000305123	NM_005544.2	815	aGc/aTc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134644679	134644679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	188	335	0	ENST00000398015.3:c.80C>A	p.Thr27Lys	p.T27K	ENST00000398015	NM_004441.4	27	aCg/aAg																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55573447	55573447	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	87	241	0	ENST00000288135.5:c.1109A>T	p.Asn370Ile	p.N370I	ENST00000288135	NM_000222.2	370	aAt/aTt																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149513266	149513266	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	63	420	1	ENST00000261799.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000261799	NM_002609.3	273	Cgc/Agc																																												NEWRECORD																																		
HIST1H3G	0	MSKCC	GRCh37	6	26271234	26271234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1827	239	799	1	ENST00000305910.3:c.379C>A	p.Leu127Ile	p.L127I	ENST00000305910	NM_003534.2	127	Ctc/Atc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32163282	32163282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1539	85	566	0	ENST00000375023.3:c.5944C>G	p.Gln1982Glu	p.Q1982E	ENST00000375023	NM_004557.3	1982	Caa/Gaa																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93969119	93969119	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1320	121	585	0	ENST00000369303.4:c.1877A>T	p.Lys626Met	p.K626M	ENST00000369303	NM_004440.3	626	aAg/aTg																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81334783	81334783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	274	454	0	ENST00000222390.5:c.1933C>A	p.His645Asn	p.H645N	ENST00000222390	NM_000601.4	645	Cat/Aat																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971093	21971093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	67	161	0	ENST00000304494.5:c.265G>T	p.Gly89Cys	p.G89C	ENST00000304494	NM_000077.4	89	Ggc/Tgc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971093	21971093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	67	161	0	ENST00000304494.5:c.265G>T	p.Gly89Cys	p.G89C	ENST00000304494	NM_000077.4	89	Ggc/Tgc																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971093	21971093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	67	161	0	ENST00000304494.5:c.265G>T	p.Gly89Cys	p.G89C	ENST00000304494	NM_000077.4	89	Ggc/Tgc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43604526	43604526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	163	417	0	ENST00000355710.3:c.1111C>A	p.Gln371Lys	p.Q371K	ENST00000355710	NM_020975.4	371	Cag/Aag																																												NEWRECORD																																		
FGF4	0	MSKCC	GRCh37	11	69589519	69589519	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	53	88	0	ENST00000168712.1:c.334C>A	p.Arg112Ser	p.R112S	ENST00000168712	NM_002007.2	112	Cgc/Agc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49448535	49448535	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	77	311	0	ENST00000301067.7:c.177-1G>T		p.X59_splice	ENST00000301067	NM_003482.3	59																																													NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29546119	29546119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	106	316	0	ENST00000358273.4:c.1624G>A	p.Ala542Thr	p.A542T	ENST00000358273	NM_001042492.2	542	Gct/Act																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627376	37627376	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	135	538	1	ENST00000447079.4:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000447079	NM_015083.1	431	Gag/Tag																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5214599	5214599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	54	442	2	ENST00000357368.4:c.4467G>A	p.Met1489Ile	p.M1489I	ENST00000357368	NM_002850.3	1489	atG/atA																																												NEWRECORD																																		
SH2D1A	0	MSKCC	GRCh37	X	123504078	123504078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	50	230	0	ENST00000371139.4:c.254C>T	p.Ser85Leu	p.S85L	ENST00000371139	NM_001114937.2	85	tCa/tTa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117641138	117641139	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	78	568	0	ENST00000368508.3:c.5832_5833insT	p.Leu1945SerfsTer17	p.L1945Sfs*17	ENST00000368508	NM_002944.2	1944	-/T																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180030348	180030362	+	inframe_deletion	In_Frame_Del	DEL	GTGTGCCCTGGTCAC	GTGTGCCCTGGTCAC	-			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	57	513	0	ENST00000261937.6:c.3922_3936del	p.Val1308_His1312del	p.V1308_H1312del	ENST00000261937	NM_182925.4	1308	GTGACCAGGGCACAC/-																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577137	7577137	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	275	446	0	ENST00000269305.4:c.801del	p.Asn268ThrfsTer77	p.N268Tfs*77	ENST00000269305	NM_001126112.2	267	cgG/cg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	250	495	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	32	326	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	89	386	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174144	112174144	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	234	501	0	ENST00000257430.4:c.2853T>A	p.Tyr951Ter	p.Y951*	ENST00000257430	NM_000038.5	951	taT/taA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	297	457	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591104	67591115	+	inframe_deletion	In_Frame_Del	DEL	TTAAACCAGACC	TTAAACCAGACC	-			P-0013795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	82	340	0	ENST00000274335.5:c.1700_1711del	p.Lys567_Leu570del	p.K567_L570del	ENST00000274335		566	aTTAAACCAGACCtt/att																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7122904	7122904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	167	573	2	ENST00000302850.5:c.3355C>T	p.Arg1119Trp	p.R1119W	ENST00000302850	NM_000208.2	1119	Cgg/Tgg																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593667	55593668	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGATCTCCCTTG			P-0013795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	269	441	0	ENST00000288135.5:c.1738_1739insTCCCTTGTGATC	p.Asp579_His580insLeuProCysAsp	p.D579_H580insLPCD	ENST00000288135	NM_000222.2	578	tat/taTGATCTCCCTTGt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106196207	106196207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	94	316	0	ENST00000380013.4:c.4540C>A	p.Leu1514Ile	p.L1514I	ENST00000380013	NM_001127208.2	1514	Ctt/Att																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	277	345	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	236	261	2	ENST00000171111.5:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000171111	NM_203500.1	362	cGg/cAg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52678783	52678784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	294	390	0	ENST00000394830.3:c.835dupA	p.Ile279AsnfsTer8	p.I279Nfs*8	ENST00000394830	NM_018313.4	279	ata/aAta																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27089611	27089611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	278	421	0	ENST00000324856.7:c.2567G>A	p.Gly856Glu	p.G856E	ENST00000324856	NM_006015.4	856	gGg/gAg																																												NEWRECORD																																		
EPCAM	0	MSKCC	GRCh37	2	47600638	47600638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	460	477	0	ENST00000263735.4:c.113G>A	p.Cys38Tyr	p.C38Y	ENST00000263735	NM_002354.2	38	tGc/tAc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436821	52436821	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	406	514	0	ENST00000460680.1:c.1957G>T	p.Glu653Ter	p.E653*	ENST00000460680	NM_004656.3	653	Gag/Tag																																												NEWRECORD																																		
FAM175A	0	MSKCC	GRCh37	4	84383675	84383675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	449	542	0	ENST00000321945.7:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000321945	NM_139076.2	393	Gaa/Aaa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112154801	112154801	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	276	371	0	ENST00000257430.4:c.1072C>T	p.Gln358Ter	p.Q358*	ENST00000257430	NM_000038.5	358	Cag/Tag																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32912653	32912653	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1182	425	744	0	ENST00000380152.3:c.4161A>C	p.Leu1387Phe	p.L1387F	ENST00000380152		1387	ttA/ttC																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0005867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	52	157	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25991736	25991736	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	99	249	2	ENST00000435504.4:c.506C>T	p.Ala169Val	p.A169V	ENST00000435504		169	gCg/gTg																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86682699	86682699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	70	214	0	ENST00000274376.6:c.2904C>G	p.Ile968Met	p.I968M	ENST00000274376	NM_002890.2	968	atC/atG																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112179233	112179233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	146	244	0	ENST00000257430.4:c.7942G>A	p.Ala2648Thr	p.A2648T	ENST00000257430	NM_000038.5	2648	Gca/Aca																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48934234	48934234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	70	213	0	ENST00000267163.4:c.689C>A	p.Ser230Ter	p.S230*	ENST00000267163	NM_000321.2	230	tCa/tAa																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37618561	37618561	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	259	240	0	ENST00000447079.4:c.238del	p.Ser80ProfsTer12	p.S80Pfs*12	ENST00000447079	NM_015083.1	79	gaT/ga																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137524703	137524705	+	frameshift_variant	Frame_Shift_Ins	INS	ATG	ATG	TTAC			P-0005867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	114	250	0	ENST00000367739.4:c.664_666delinsGTAA	p.His222ValfsTer8	p.H222Vfs*8	ENST00000367739	NM_000416.2	222	CAT/GTAA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	112	544	0	ENST00000269305.4:c.845G>C	p.Arg282Pro	p.R282P	ENST00000269305	NM_001126112.2	282	cGg/cCg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717672	89717673	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACGGGAAGACAAGTTCATGTACTTT			P-0004903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	52	412	0	ENST00000371953.3:c.700_725dup	p.Glu242AspfsTer23	p.E242Dfs*23	ENST00000371953	NM_000314.4	233	cga/cGACGGGAAGACAAGTTCATGTACTTTga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			631	187	446	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164784	47164784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			334	69	289	0	ENST00000409792.3:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000409792	NM_014159.6	448	Cgg/Tgg																																												NEWRECORD																																		
CD276	0	MSKCC	GRCh37	15	73991982	73991982	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			800	84	476	0	ENST00000318443.5:c.2T>C	p.Met1?	p.M1?	ENST00000318443	NM_001024736.1	1	aTg/aCg																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226574125	226574125	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			551	90	410	0	ENST00000366794.5:c.736T>A	p.Trp246Arg	p.W246R	ENST00000366794	NM_001618.3	246	Tgg/Agg																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225360671	225360671	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			519	72	324	0	ENST00000264414.4:c.1720G>T	p.Glu574Ter	p.E574*	ENST00000264414	NM_003590.4	574	Gaa/Taa																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128205041	128205041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			892	108	399	0	ENST00000341105.2:c.400C>A	p.Pro134Thr	p.P134T	ENST00000341105	NM_032638.4	134	Cct/Act																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134851567	134851567	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			601	65	285	0	ENST00000398015.3:c.973G>C	p.Gly325Arg	p.G325R	ENST00000398015	NM_004441.4	325	Ggt/Cgt																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142281570	142281570	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			501	48	308	0	ENST00000350721.4:c.674A>T	p.Gln225Leu	p.Q225L	ENST00000350721	NM_001184.3	225	cAa/cTa																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32169195	32169195	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			555	71	349	0	ENST00000375023.3:c.3838G>C	p.Asp1280His	p.D1280H	ENST00000375023	NM_004557.3	1280	Gat/Cat																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93969087	93969087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			675	123	522	1	ENST00000369303.4:c.1909C>A	p.Arg637Ser	p.R637S	ENST00000369303	NM_004440.3	637	Cgt/Agt																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15942864	15942864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			567	83	448	0	ENST00000268712.3:c.6838G>A	p.Glu2280Lys	p.E2280K	ENST00000268712	NM_006311.3	2280	Gag/Aag																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	756806	756806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			671	54	372	0	ENST00000314574.4:c.22G>C	p.Glu8Gln	p.E8Q	ENST00000314574	NM_005433.3	8	Gaa/Caa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023861	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGCGCCGGCAAGGGCCCGGCGGACATGGCCTCGCAGTGTTG	GGGGGCGCCGGCAAGGGCCCGGCGGACATGGCCTCGCAGTGTTG	-			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			274	25	105	0	ENST00000324856.7:c.973_1016del	p.Ala325CysfsTer60	p.A325Cfs*60	ENST00000324856	NM_006015.4	323	GGGGGCGCCGGCAAGGGCCCGGCGGACATGGCCTCGCAGTGTTGg/g																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971091	21971091	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			317	66	194	0	ENST00000304494.5:c.267del	p.Phe90SerfsTer56	p.F90Sfs*56	ENST00000304494	NM_000077.4	89	ggC/gg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971091	21971091	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			317	66	194	0	ENST00000304494.5:c.267del	p.Phe90SerfsTer56	p.F90Sfs*56	ENST00000304494	NM_000077.4	89	ggC/gg																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971091	21971091	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			317	66	194	0	ENST00000304494.5:c.267del	p.Phe90SerfsTer56	p.F90Sfs*56	ENST00000304494	NM_000077.4	89	ggC/gg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52637670	52637671	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005621-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			446	61	425	0	ENST00000394830.3:c.2645dup	p.Asn882LysfsTer19	p.N882Kfs*19	ENST00000394830	NM_018313.4	882	aat/aaAt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	148	428	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0009837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	58	434	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47637339	47637339	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1285	128	615	0	ENST00000233146.2:c.473A>G	p.Gln158Arg	p.Q158R	ENST00000233146	NM_000251.2	158	cAg/cGg																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	427383	427383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	93	497	0	ENST00000399788.2:c.2786G>T	p.Gly929Val	p.G929V	ENST00000399788	NM_001042603.1	929	gGg/gTg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47041373	47041373	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1235	117	684	1	ENST00000329236.7:c.1483C>T	p.Gln495Ter	p.Q495*	ENST00000329236	NM_001204466.1	495	Cag/Tag																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31024406	31024407	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0009837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	86	493	0	ENST00000375687.4:c.3892_3893insGA	p.Thr1298ArgfsTer153	p.T1298Rfs*153	ENST00000375687	NM_015338.5	1297	-/AG																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	150	157	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519925		P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	206	247	0	ENST00000263967.3:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000263967	NM_006218.2	453	Gaa/Caa																																												NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	301	372	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																												NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56161221	56161221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs781300314		P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	150	348	1	ENST00000399503.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000399503	NM_005921.1	364	Cgg/Tgg																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128829321	128829321	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	86	153	0	ENST00000249373.3:c.329C>T	p.Ser110Leu	p.S110L	ENST00000249373	NM_005631.4	110	tCg/tTg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151879670	151879670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	94	114	1	ENST00000262189.6:c.5275C>T	p.Gln1759Ter	p.Q1759*	ENST00000262189	NM_170606.2	1759	Cag/Tag																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007799	45007799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	85	231	0	ENST00000558401.1:c.246C>G	p.Phe82Leu	p.F82L	ENST00000558401	NM_004048.2	82	ttC/ttG																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67645516	67645516	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	37	94	0	ENST00000264010.4:c.781G>A	p.Gly261Ser	p.G261S	ENST00000264010	NM_006565.3	261	Ggt/Agt																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16256794	16256795	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	118	264	0	ENST00000375759.3:c.4060_4061del	p.Ser1354PhefsTer7	p.S1354Ffs*7	ENST00000375759	NM_015001.2	1353	gtGAgt/gtgt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971199	21971200	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ATCA			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			48	44	75	0	ENST00000361570.3:c.321_324dup	p.Asp109Ter	p.D109*	ENST00000361570	NM_058195.3	108	-/TGAT																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971199	21971200	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	ATCA			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			48	44	75	0	ENST00000361570.3:c.321_324dup	p.Asp109Ter	p.D109*	ENST00000361570	NM_058195.3	108	-/TGAT																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061530	38061556	+	inframe_deletion	In_Frame_Del	DEL	CGCGCGGCTGCGGCCCAGGTTGGACGG	CGCGCGGCTGCGGCCCAGGTTGGACGG	-			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			104	36	95	0	ENST00000250448.2:c.433_459del	p.Pro145_Ala153del	p.P145_A153del	ENST00000250448	NM_004496.3	145	CCGTCCAACCTGGGCCGCAGCCGCGCG/-																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3788618	3788625	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGGCAA	GGAGGCAA	-			P-0002562-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	98	325	0	ENST00000262367.5:c.4329_4336del	p.Cys1444HisfsTer6	p.C1444Hfs*6	ENST00000262367	NM_004380.2	1443	cgTTGCCTCCgc/cggc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	88	341	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	147	674	1	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591966	48591967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014738-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	35	216	0	ENST00000342988.3:c.1130dup	p.Arg378GlufsTer15	p.R378Efs*15	ENST00000342988	NM_005359.5	377	gag/gAag																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	284	671	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0014648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	611	926	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48955399	48955399	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			97	161	316	0	ENST00000267163.4:c.1515delT	p.Asp507IlefsTer12	p.D507Ifs*12	ENST00000267163	NM_000321.2	505	aaT/aa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821973	72821973	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	263	372	0	ENST00000268489.5:c.10202C>A	p.Thr3401Asn	p.T3401N	ENST00000268489	NM_006885.3	3401	aCc/aAc																																												NEWRECORD																																		
SRC	0	MSKCC	GRCh37	20	36030058	36030058	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	419	742	0	ENST00000358208.4:c.1093C>T	p.Gln365Ter	p.Q365*	ENST00000358208		365	Cag/Tag																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41568557	41568557	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	505	805	0	ENST00000263253.7:c.4507T>A	p.Tyr1503Asn	p.Y1503N	ENST00000263253	NM_001429.3	1503	Tat/Aat																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249012	55249013	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGTTA			P-0014648-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	274	626	0	ENST00000275493.2:c.2310_2311insGGGTTA	p.Asp770_Asn771insGlyLeu	p.D770_N771insGL	ENST00000275493	NM_005228.3	770	-/GGGTTA																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0009627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	303	480	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30051658	30051658	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	166	408	0	ENST00000338641.4:c.592C>T	p.Arg198Ter	p.R198*	ENST00000338641	NM_000268.3	198	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176051	112176051	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	116	380	0	ENST00000257430.4:c.4760C>A	p.Ser1587Ter	p.S1587*	ENST00000257430	NM_000038.5	1587	tCa/tAa																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78919565	78919565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	77	272	0	ENST00000306801.3:c.3124G>A	p.Asp1042Asn	p.D1042N	ENST00000306801	NM_020761.2	1042	Gac/Aac																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039435	47039435	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0009627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	128	434	0	ENST00000329236.7:c.827T>A	p.Ile276Asn	p.I276N	ENST00000329236	NM_001204466.1	276	aTc/aAc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115859	8115859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	213	596	0	ENST00000346208.3:c.1205C>T	p.Ser402Phe	p.S402F	ENST00000346208		402	tCc/tTc																																												NEWRECORD																																		
YAP1	0	MSKCC	GRCh37	11	102056791	102056791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	211	420	0	ENST00000282441.5:c.731G>A	p.Gly244Glu	p.G244E	ENST00000282441	NM_001130145.2	244	gGa/gAa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151878354	151878355	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	337	465	0	ENST00000262189.6:c.6590dup	p.Arg2198GlufsTer4	p.R2198Efs*4	ENST00000262189	NM_170606.2	2197	cag/caAg																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138202269	138202269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			671	372	303	0	ENST00000237289.4:c.2186G>A	p.Ser729Asn	p.S729N	ENST00000237289	NM_001270507.1	729	aGc/aAc																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7980426	7980426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	156	329	0	ENST00000319144.4:c.1157G>A	p.Arg386His	p.R386H	ENST00000319144	NM_001139.2	386	cGc/cAc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66943583	66943583	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			641	120	473	0	ENST00000374690.3:c.2663T>A	p.Val888Glu	p.V888E	ENST00000374690	NM_000044.3	888	gTg/gAg																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52441202	52441203	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GTAGACCTTCAGCCCATCCA			P-0002299-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	497	287	0	ENST00000460680.1:c.548_567dup	p.Pro190TrpfsTer4	p.P190Wfs*4	ENST00000460680	NM_004656.3	189	-/TGGATGGGCTGAAGGTCTAC																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0004866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	67	217	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0004866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	57	158	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0004866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	57	158	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0004866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	60	273	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28883065	28883065	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0004866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	48	181	0	ENST00000282397.4:c.3636-1G>C		p.X1212_splice	ENST00000282397	NM_002019.4	1212																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7572986	7572986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	30	147	0	ENST00000269305.4:c.1123C>A	p.Gln375Lys	p.Q375K	ENST00000269305	NM_001126112.2	375	Cag/Aag																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	147	325	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0008864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	308	489	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	100	328	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0008864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	142	438	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67593415	67593415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	29	258	0	ENST00000274335.5:c.2161C>T	p.Gln721Ter	p.Q721*	ENST00000274335		721	Cag/Tag																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39725967	39725967	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	102	278	0	ENST00000361337.2:c.838A>G	p.Lys280Glu	p.K280E	ENST00000361337	NM_003286.2	280	Aaa/Gaa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27097746	27097747	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	145	425	0	ENST00000324856.7:c.3338dup	p.Pro1114SerfsTer9	p.P1114Sfs*9	ENST00000324856	NM_006015.4	1112	gac/gaCc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591242	67591247	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTTCAG	TTTCAG	-			P-0008864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	163	313	0	ENST00000274335.5:c.1746-6_1746-1del		p.X582_splice	ENST00000274335		582																																													NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692903	89692906	+	missense_variant	Missense_Mutation	ONP	ACGA	ACGA	CAGT			P-0008864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	77	321	0	ENST00000371953.3:c.387_390delinsCAGT	p.Arg130Ser	p.R130S	ENST00000371953	NM_000314.4	129	ggACGA/ggCAGT																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0014928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	62	361	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41730075	41730075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	82	456	0	ENST00000242208.4:c.454C>T	p.Arg152Cys	p.R152C	ENST00000242208	NM_002192.2	152	Cgt/Tgt																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30128266	30128266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	96	712	0	ENST00000263025.4:c.966G>T	p.Glu322Asp	p.E322D	ENST00000263025	NM_002746.2	322	gaG/gaT																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67070575	67070575	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	57	282	0	ENST00000412916.2:c.199C>T	p.Gln67Ter	p.Q67*	ENST00000412916		67	Cag/Tag																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178340	56178341	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	57	410	0	ENST00000399503.3:c.3315dup	p.Ile1106TyrfsTer4	p.I1106Yfs*4	ENST00000399503	NM_005921.1	1105	gtt/gTtt																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178379	56178379	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014928-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	72	400	0	ENST00000399503.3:c.3352G>T	p.Glu1118Ter	p.E1118*	ENST00000399503	NM_005921.1	1118	Gag/Tag																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	211	319	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151859305	151859305	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	336	497	0	ENST00000262189.6:c.11357C>G	p.Ser3786Ter	p.S3786*	ENST00000262189	NM_170606.2	3786	tCa/tGa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991331	72991331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1250	229	750	0	ENST00000268489.5:c.2714C>G	p.Ala905Gly	p.A905G	ENST00000268489	NM_006885.3	905	gCt/gGt																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160677	56160678	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	410	610	0	ENST00000399503.3:c.953dup	p.Leu318PhefsTer8	p.L318Ffs*8	ENST00000399503	NM_005921.1	317	-/T																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56152576	56152577	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0005036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	279	503	0	ENST00000399503.3:c.633+1dup		p.V211fs	ENST00000399503	NM_005921.1	211	gtg/gtGg																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5126418	5126418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			479	50	369	0	ENST00000381652.3:c.3263T>C	p.Leu1088Ser	p.L1088S	ENST00000381652	NM_004972.3	1088	tTa/tCa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139404290	139404290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			155	369	520	1	ENST00000277541.6:c.2864G>A	p.Arg955His	p.R955H	ENST00000277541	NM_017617.3	955	cGc/cAc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43596002	43596002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			547	172	435	0	ENST00000355710.3:c.169C>T	p.Arg57Trp	p.R57W	ENST00000355710	NM_020975.4	57	Cgg/Tgg																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2156760	2156760	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			612	171	457	0	ENST00000434045.2:c.163-1G>T		p.X55_splice	ENST00000434045	NM_001127598.1	55																																													NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45395738	45395738	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			132	389	431	1	ENST00000262160.6:c.396G>A	p.Trp132Ter	p.W132*	ENST00000262160	NM_005901.5	132	tgG/tgA																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17950437	17950437	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			366	154	335	0	ENST00000458235.1:c.1290C>G	p.Ile430Met	p.I430M	ENST00000458235	NM_000215.3	430	atC/atG																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			146	263	342	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			150	326	346	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
NPM1	0	MSKCC	GRCh37	5	170819743	170819745	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			511	114	282	0	ENST00000296930.5:c.384_386delAGA	p.Glu131del	p.E131del	ENST00000296930	NM_002520.6	128	GAA/-																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116423453	116423454	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			652	182	470	0	ENST00000397752.3:c.3731dupA	p.Leu1245AlafsTer42	p.L1245Afs*42	ENST00000397752	NM_000245.2	1243	gca/gcAa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332272	70332273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	249	794	2	ENST00000373644.4:c.184dupA	p.Thr62AsnfsTer4	p.T62Nfs*4	ENST00000373644	NM_030625.2	59	-/A																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			70	75	188	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																												NEWRECORD																																		
H3F3C	0	MSKCC	GRCh37	12	31944900	31944901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			409	101	307	1	ENST00000340398.3:c.200dupT	p.Gln68ProfsTer14	p.Q68Pfs*14	ENST00000340398	NM_001013699.2	67	ttc/ttTc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	550	879	7	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99162489	99162489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			672	158	556	0	ENST00000074304.5:c.1007C>A	p.Thr336Lys	p.T336K	ENST00000074304	NM_001134224.1	336	aCa/aAa																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72890293	72890293	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			909	67	503	0	ENST00000325599.8:c.389A>G	p.Glu130Gly	p.E130G	ENST00000325599	NM_018130.2	130	gAg/gGg																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138456547	138456547	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			958	70	451	0	ENST00000289153.2:c.801+2T>C		p.X267_splice	ENST00000289153	NM_006219.2	267																																													NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288333	33288333	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200104639		P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			567	43	300	0	ENST00000374542.5:c.1075C>T	p.Arg359Trp	p.R359W	ENST00000374542	NM_001141970.1	359	Cgg/Tgg																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106552711	106552711	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			847	75	541	0	ENST00000369096.4:c.676A>C	p.Ser226Arg	p.S226R	ENST00000369096	NM_001198.3	226	Agc/Cgc																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38506100	38506100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			942	74	475	0	ENST00000254066.5:c.392T>C	p.Ile131Thr	p.I131T	ENST00000254066	NM_000964.3	131	aTc/aCc																																												NEWRECORD																																		
STAT5A	0	MSKCC	GRCh37	17	40462634	40462634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	98	913	1	ENST00000345506.4:c.2332C>T	p.Arg778Cys	p.R778C	ENST00000345506	NM_003152.3	778	Cgc/Tgc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42799164	42799164	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			338	26	245	0	ENST00000575354.2:c.4648A>G	p.Thr1550Ala	p.T1550A	ENST00000575354	NM_015125.3	1550	Act/Gct																																												NEWRECORD																																		
DNAJB1	0	MSKCC	GRCh37	19	14626859	14626860	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000449-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1340	247	886	0	ENST00000254322.2:c.915dup	p.Lys306GlnfsTer12	p.K306Qfs*12	ENST00000254322	NM_006145.1	305	-/C																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	357	798	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	387	766	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162742008	162742008	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	370	777	0	ENST00000367921.3:c.1699G>C	p.Glu567Gln	p.E567Q	ENST00000367921	NM_006182.2	567	Gag/Cag																																												NEWRECORD																																		
CCND3	0	MSKCC	GRCh37	6	41905105	41905105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	310	529	0	ENST00000372991.4:c.442C>G	p.Leu148Val	p.L148V	ENST00000372991	NM_001760.3	148	Ctc/Gtc																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63553946	63553946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	381	774	0	ENST00000307078.5:c.793G>A	p.Glu265Lys	p.E265K	ENST00000307078	NM_004655.3	265	Gaa/Aaa																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41420060	41420060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	148	610	2	ENST00000373198.4:c.261G>T	p.Lys87Asn	p.K87N	ENST00000373198	NM_133170.3	87	aaG/aaT																																												NEWRECORD																																		
CRKL	0	MSKCC	GRCh37	22	21272506	21272506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	386	776	1	ENST00000354336.3:c.284C>A	p.Thr95Asn	p.T95N	ENST00000354336	NM_005207.3	95	aCc/aAc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46233193	46233219	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGTTCCAGTCATCAAATGTTATCTG	CAAGTTCCAGTCATCAAATGTTATCTG	AGAT			P-0013387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	328	740	0	ENST00000334344.6:c.1412_1438delinsAGAT	p.Pro471GlnfsTer4	p.P471Qfs*4	ENST00000334344	NM_152641.2	471	cCAAGTTCCAGTCATCAAATGTTATCTGaa/cAGATaa																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13940362	13940362	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0011363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	101	308	0	ENST00000405192.2:c.1143+1G>A		p.X381_splice	ENST00000405192	NM_001163147.1	381																																													NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32907240	32907241	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	71	384	0	ENST00000380152.3:c.1626dup	p.His543ThrfsTer17	p.H543Tfs*17	ENST00000380152		542	ata/atAa																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	349	230	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0009341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	535	409	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	338	325	1	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344954	118344955	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	215	325	0	ENST00000534358.1:c.3086dup	p.Ala1030GlyfsTer9	p.A1030Gfs*9	ENST00000534358	NM_005933.3	1027	cta/ctAa																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001545-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			846	91	541	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30057222	30057222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	76	473	0	ENST00000338641.4:c.704G>A	p.Gly235Glu	p.G235E	ENST00000338641	NM_000268.3	235	gGa/gAa																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52439900	52439901	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TCAGC			P-0008755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	42	311	0	ENST00000460680.1:c.807_811dup	p.Ile271SerfsTer2	p.I271Sfs*2	ENST00000460680	NM_004656.3	271	att/aGCTGAtt																																												NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1463	433	548	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0008945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	161	387	0	ENST00000399503.3:c.819_820delAG	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0008945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	219	512	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331																																													NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	394866	394866	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs144593192		P-0008945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	22	405	0	ENST00000380956.4:c.262C>G	p.Pro88Ala	p.P88A	ENST00000380956	NM_001195286.1	88	Ccg/Gcg																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8075612	8075612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	239	1470	1	ENST00000377482.5:c.68G>A	p.Gly23Asp	p.G23D	ENST00000377482	NM_018948.3	23	gGc/gAc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16261038	16261038	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144525015		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	86	961	5	ENST00000375759.3:c.8303C>T	p.Ala2768Val	p.A2768V	ENST00000375759	NM_015001.2	2768	gCg/gTg																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72076745	72076745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1171	219	1613	1	ENST00000357731.5:c.752C>T	p.Pro251Leu	p.P251L	ENST00000357731	NM_173808.2	251	cCg/cTg																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115251164	115251164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	150	1322	2	ENST00000369535.4:c.562G>A	p.Val188Met	p.V188M	ENST00000369535	NM_002524.4	188	Gtg/Atg																																												NEWRECORD																																		
HIST3H3	0	MSKCC	GRCh37	1	228612819	228612819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	157	1845	7	ENST00000366696.1:c.208C>T	p.Arg70Trp	p.R70W	ENST00000366696	NM_003493.2	70	Cgg/Tgg																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	175	1132	5	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	173	797	0	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128047007	128047007	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	154	1435	1	ENST00000285398.2:c.728A>T	p.Asp243Val	p.D243V	ENST00000285398	NM_000122.1	243	gAc/gTc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	180	1067	1	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41268762	41268762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	158	1195	2	ENST00000349496.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000349496	NM_001904.3	334	Gaa/Aaa																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41277275	41277275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	203	1119	3	ENST00000349496.5:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000349496	NM_001904.3	582	Cgg/Tgg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89390994	89390994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	185	1237	0	ENST00000336596.2:c.1060C>T	p.Arg354Trp	p.R354W	ENST00000336596	NM_005233.5	354	Cgg/Tgg																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138374293	138374293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	191	1258	1	ENST00000289153.2:c.3151G>A	p.Glu1051Lys	p.E1051K	ENST00000289153	NM_006219.2	1051	Gaa/Aaa																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808338	1808338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	113	1260	0	ENST00000260795.2:c.2096C>A	p.Pro699His	p.P699H	ENST00000260795		699	cCt/cAt																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808590	1808590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	93	1215	0	ENST00000260795.2:c.2203C>A	p.Pro735Thr	p.P735T	ENST00000260795		735	Ccc/Acc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55964866	55964866	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	180	1107	3	ENST00000263923.4:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000263923	NM_002253.2	791	Cgg/Tgg																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591125	67591125	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	207	922	0	ENST00000274335.5:c.1718T>C	p.Leu573Pro	p.L573P	ENST00000274335		573	cTg/cCg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	238	1241	6	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173495	112173495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147655929		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	180	1044	0	ENST00000257430.4:c.2204C>T	p.Ala735Val	p.A735V	ENST00000257430	NM_000038.5	735	gCg/gTg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	204	1424	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149450031	149450031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	68	1007	1	ENST00000286301.3:c.1186C>T	p.Leu396Phe	p.L396F	ENST00000286301	NM_005211.3	396	Ctc/Ttc																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149457763	149457763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	58	873	0	ENST00000286301.3:c.641G>A	p.Arg214Gln	p.R214Q	ENST00000286301	NM_005211.3	214	cGg/cAg																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056632	26056632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	50	288	0	ENST00000343677.2:c.25C>G	p.Pro9Ala	p.P9A	ENST00000343677	NM_005319.3	9	Ccc/Gcc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32163675	32163675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	51	676	0	ENST00000375023.3:c.5551C>T	p.Pro1851Ser	p.P1851S	ENST00000375023	NM_004557.3	1851	Ccc/Tcc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117681061	117681061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	222	1194	0	ENST00000368508.3:c.3559G>A	p.Val1187Ile	p.V1187I	ENST00000368508	NM_002944.2	1187	Gtt/Att																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138202364	138202364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	97	565	0	ENST00000237289.4:c.2281C>T	p.Arg761Cys	p.R761C	ENST00000237289	NM_001270507.1	761	Cgt/Tgt																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50467663	50467663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	119	1057	0	ENST00000331340.3:c.898G>A	p.Glu300Lys	p.E300K	ENST00000331340	NM_006060.4	300	Gag/Aag																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8485917	8485917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	191	1402	4	ENST00000356435.5:c.2900C>T	p.Pro967Leu	p.P967L	ENST00000356435		967	cCg/cTg																																												NEWRECORD																																		
CDKN2B	0	MSKCC	GRCh37	9	22006026	22006026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	218	1115	0	ENST00000276925.6:c.377G>A	p.Arg126His	p.R126H	ENST00000276925	NM_004936.3	126	cGc/cAc																																												NEWRECORD																																		
EGFL7	0	MSKCC	GRCh37	9	139563095	139563095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	36	1109	4	ENST00000308874.7:c.167G>A	p.Cys56Tyr	p.C56Y	ENST00000308874		56	tGc/tAc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63851671	63851671	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	72	894	2	ENST00000279873.7:c.2449A>G	p.Arg817Gly	p.R817G	ENST00000279873	NM_032199.2	817	Agg/Ggg																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	167	1040	3	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123310860	123310860	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147987917		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	257	1164	5	ENST00000358487.5:c.568C>T	p.Arg190Trp	p.R190W	ENST00000358487	NM_000141.4	190	Cgg/Tgg																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32410618	32410618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	138	1117	1	ENST00000332351.3:c.1540C>A	p.Gln514Lys	p.Q514K	ENST00000332351	NM_024426.4	514	Cag/Aag																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	11905418	11905418	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	102	907	0	ENST00000396373.4:c.68C>A	p.Pro23Gln	p.P23Q	ENST00000396373	NM_001987.4	23	cCa/cAa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434315	49434315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	100	1567	2	ENST00000301067.7:c.7238C>T	p.Ala2413Val	p.A2413V	ENST00000301067	NM_003482.3	2413	gCc/gTc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49437175	49437175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	90	1279	3	ENST00000301067.7:c.5504G>A	p.Arg1835His	p.R1835H	ENST00000301067	NM_003482.3	1835	cGt/cAt																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69233149	69233149	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	179	1369	0	ENST00000462284.1:c.1014A>C	p.Glu338Asp	p.E338D	ENST00000462284	NM_002392.5	338	gaA/gaC																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21562345	21562345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	121	788	2	ENST00000382592.4:c.1574G>A	p.Arg525His	p.R525H	ENST00000382592	NM_014572.2	525	cGc/cAc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	455	1678	4	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	209	1371	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23641218	23641218	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	96	985	2	ENST00000261584.4:c.2257C>T	p.Arg753Ter	p.R753*	ENST00000261584	NM_024675.3	753	Cga/Tga																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68835630	68835630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	136	1372	3	ENST00000261769.5:c.221G>A	p.Arg74Gln	p.R74Q	ENST00000261769	NM_004360.3	74	cGa/cAa																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89838087	89838087	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	62	1193	0	ENST00000389301.3:c.2150T>C	p.Met717Thr	p.M717T	ENST00000389301	NM_000135.2	717	aTg/aCg																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38510723	38510723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	31	798	1	ENST00000254066.5:c.977C>T	p.Thr326Met	p.T326M	ENST00000254066	NM_000964.3	326	aCg/aTg																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	69	817	1	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78811795	78811795	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	103	979	0	ENST00000306801.3:c.1210C>T	p.Arg404Trp	p.R404W	ENST00000306801	NM_020761.2	404	Cgg/Tgg																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	197	1158	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5222982	5222982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201435229		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	66	914	1	ENST00000357368.4:c.2821G>A	p.Ala941Thr	p.A941T	ENST00000357368	NM_002850.3	941	Gcc/Acc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5229502	5229502	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	18	341	0	ENST00000357368.4:c.2349G>T	p.Gln783His	p.Q783H	ENST00000357368	NM_002850.3	783	caG/caT																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5231554	5231554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	38	730	1	ENST00000357368.4:c.1922C>T	p.Pro641Leu	p.P641L	ENST00000357368	NM_002850.3	641	cCg/cTg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11152145	11152145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	116	1308	2	ENST00000344626.4:c.4333C>T	p.Arg1445Trp	p.R1445W	ENST00000344626	NM_003072.3	1445	Cgg/Tgg																																												NEWRECORD																																		
MEF2B	0	MSKCC	GRCh37	19	19260058	19260058	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143400241		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	72	1265	3	ENST00000162023.5:c.235C>T	p.Arg79Cys	p.R79C	ENST00000162023		79	Cgc/Tgc																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40762839	40762839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	47	898	3	ENST00000392038.2:c.169G>A	p.Val57Ile	p.V57I	ENST00000392038	NM_001626.4	57	Gta/Ata																																												NEWRECORD																																		
SRC	0	MSKCC	GRCh37	20	36028617	36028617	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	63	1177	0	ENST00000358208.4:c.959T>C	p.Leu320Pro	p.L320P	ENST00000358208		320	cTg/cCg																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39708802	39708802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	144	892	2	ENST00000361337.2:c.413G>A	p.Arg138Lys	p.R138K	ENST00000361337	NM_003286.2	138	aGa/aAa																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40739099	40739099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	83	1163	3	ENST00000373198.4:c.3185G>A	p.Arg1062His	p.R1062H	ENST00000373198	NM_133170.3	1062	cGc/cAc																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46256696	46256696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1313	245	1794	1	ENST00000371998.3:c.752G>A	p.Arg251His	p.R251H	ENST00000371998		251	cGc/cAc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41525915	41525915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	149	1040	0	ENST00000263253.7:c.1190G>A	p.Arg397Gln	p.R397Q	ENST00000263253	NM_001429.3	397	cGa/cAa																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39911597	39911597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	163	701	5	ENST00000378444.4:c.5033G>A	p.Arg1678His	p.R1678H	ENST00000378444	NM_001123385.1	1678	cGc/cAc																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39931619	39931619	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	128	685	0	ENST00000378444.4:c.2980G>T	p.Glu994Ter	p.E994*	ENST00000378444	NM_001123385.1	994	Gag/Tag																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	202	874	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	174	1262	7	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	70	992	9	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																												NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	139	1371	6	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	89	1186	1	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48027926	48027927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	185	1127	1	ENST00000234420.5:c.2805dup	p.Asp936Ter	p.D936*	ENST00000234420	NM_000179.2	935	tct/tcTt																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	72	731	5	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0005548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	177	908	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0005504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1216	3238	459	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs483352695		P-0005504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	119	508	0	ENST00000269305.4:c.736A>T	p.Met246Leu	p.M246L	ENST00000269305	NM_001126112.2	246	Atg/Ttg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	117	451	0	ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30673008	30673008	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	49	307	0	ENST00000376406.3:c.3952T>G	p.Ser1318Ala	p.S1318A	ENST00000376406	NM_014641.2	1318	Tct/Gct																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151875031	151875031	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	80	524	0	ENST00000262189.6:c.7507C>T	p.Gln2503Ter	p.Q2503*	ENST00000262189	NM_170606.2	2503	Cag/Tag																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18762554	18762554	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	116	483	0	ENST00000266497.5:c.4050G>C	p.Met1350Ile	p.M1350I	ENST00000266497		1350	atG/atC																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2130306	2130306	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	134	795	0	ENST00000219476.3:c.3538A>G	p.Lys1180Glu	p.K1180E	ENST00000219476	NM_000548.3	1180	Aag/Gag																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3820773	3820773	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	91	693	0	ENST00000262367.5:c.2678C>G	p.Ser893Trp	p.S893W	ENST00000262367	NM_004380.2	893	tCg/tGg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56170882	56170890	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCTTATT	CTGCTTATT	AATGGAA			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	47	592	0	ENST00000399503.3:c.1710_1718delinsAATGGAA	p.Cys571MetfsTer4	p.C571Mfs*4	ENST00000399503	NM_005921.1	570	ggCTGCTTATTt/ggAATGGAAt																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111510	8111511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	177	768	0	ENST00000346208.3:c.998dup	p.Asn333LysfsTer19	p.N333Kfs*19	ENST00000346208		332	-/A																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41245366	41245367	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0002915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	156	803	0	ENST00000357654.3:c.2181_2182del	p.Glu729ArgfsTer10	p.E729Rfs*10	ENST00000357654	NM_007294.3	727	ccAAga/ccga																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			46	238	187	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0003482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	124	199	0	ENST00000269305.4:c.993+2T>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																													NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152027789	152027790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTCAGCATCCTCTTCTGCAGATTGTTCTTTGA			P-0003482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	152	359	1	ENST00000262189.6:c.254_285dup	p.Ala96SerfsTer20	p.A96Sfs*20	ENST00000262189	NM_170606.2	95	-/TCAAAGAACAATCTGCAGAAGAGGATGCTGAA																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001967-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	183	216	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2193780	2193780	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0001967-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	200	339	0	ENST00000398665.3:c.586G>C	p.Glu196Gln	p.E196Q	ENST00000398665	NM_032482.2	196	Gag/Cag																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123179184	123179184	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001967-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	344	467	0	ENST00000218089.9:c.633A>C	p.Gln211His	p.Q211H	ENST00000218089	NM_001042749.1	211	caA/caC																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68856027	68856028	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001967-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	252	515	0	ENST00000261769.5:c.1838dupA	p.Asn613LysfsTer4	p.N613Kfs*4	ENST00000261769	NM_004360.3	612	ata/atAa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	244	521	3	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577573	7577573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	394	595	2	ENST00000269305.4:c.708C>A	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taC/taA																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971011	21971012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	261	369	0	ENST00000304494.5:c.346_347insT	p.Asp116ValfsTer4	p.D116Vfs*4	ENST00000304494	NM_000077.4	116	gac/gTac																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971011	21971012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	261	369	0	ENST00000304494.5:c.346_347insT	p.Asp116ValfsTer4	p.D116Vfs*4	ENST00000304494	NM_000077.4	116	gac/gTac																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971011	21971012	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014329-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	261	369	0	ENST00000304494.5:c.346_347insT	p.Asp116ValfsTer4	p.D116Vfs*4	ENST00000304494	NM_000077.4	116	gac/gTac																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0007519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	407	423	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	142	561	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	59	243	1	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156843613	156843613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			712	218	805	0	ENST00000524377.1:c.1039C>T	p.Arg347Cys	p.R347C	ENST00000524377	NM_002529.3	347	Cgc/Tgc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30143444	30143444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	14	84	0	ENST00000389048.3:c.82C>T	p.Arg28Cys	p.R28C	ENST00000389048	NM_004304.4	28	Cgc/Tgc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112137048	112137048	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	59	260	0	ENST00000257430.4:c.802G>T	p.Glu268Ter	p.E268*	ENST00000257430	NM_000038.5	268	Gaa/Taa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170813	112170813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	130	703	0	ENST00000257430.4:c.1909G>A	p.Gly637Arg	p.G637R	ENST00000257430	NM_000038.5	637	Ggg/Agg																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103518992	103518992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	173	227	3	ENST00000355739.4:c.2330G>A	p.Arg777His	p.R777H	ENST00000355739	NM_000123.3	777	cGc/cAc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	88	251	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126																																													NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44896903	44896903	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000625-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	48	1230	0	ENST00000377967.4:c.623A>T	p.Gln208Leu	p.Q208L	ENST00000377967	NM_021140.2	208	cAa/cTa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1254614	1254614	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201330213		P-0008570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	120	267	0	ENST00000310581.5:c.3164C>T	p.Ser1055Leu	p.S1055L	ENST00000310581	NM_198253.2	1055	tCg/tTg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111467	8111468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	155	360	0	ENST00000346208.3:c.954dup	p.Asn319GlufsTer33	p.N319Efs*33	ENST00000346208		318	gcg/gcGg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	18	83	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	61	672	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47028824	47028824	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	19	228	0	ENST00000329236.7:c.128C>G	p.Ser43Ter	p.S43*	ENST00000329236	NM_001204466.1	43	tCa/tGa																																												NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44911033	44911034	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	106	292	0	ENST00000377967.4:c.735dup	p.Gln247ThrfsTer16	p.Q247Tfs*16	ENST00000377967	NM_021140.2	245	gtc/gtCc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118373848	118373848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	65	396	1	ENST00000534358.1:c.7241C>T	p.Ser2414Leu	p.S2414L	ENST00000534358	NM_005933.3	2414	tCa/tTa																																												NEWRECORD																																		
H3F3C	0	MSKCC	GRCh37	12	31945034	31945034	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1185	163	672	0	ENST00000340398.3:c.67A>T	p.Thr23Ser	p.T23S	ENST00000340398	NM_001013699.2	23	Acg/Tcg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577100	7577101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	167	610	1	ENST00000269305.4:c.837_838insT	p.Arg280Ter	p.R280*	ENST00000269305	NM_001126112.2	279	-/T																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29486027	29486027	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	112	307	0	ENST00000358273.4:c.205-1G>A		p.X69_splice	ENST00000358273	NM_001042492.2	69																																													NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	795	530	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46715685	46715685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	587	640	0	ENST00000371975.4:c.104G>A	p.Arg35Gln	p.R35Q	ENST00000371975	NM_003579.3	35	cGg/cAg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151859467	151859467	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	201	396	0	ENST00000262189.6:c.11195A>T	p.Glu3732Val	p.E3732V	ENST00000262189	NM_170606.2	3732	gAg/gTg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108173586	108173586	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	165	213	0	ENST00000278616.4:c.5326G>T	p.Glu1776Ter	p.E1776*	ENST00000278616	NM_000051.3	1776	Gaa/Taa																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	97	509	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575209	48575209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	106	435	0	ENST00000342988.3:c.403C>T	p.Arg135Ter	p.R135*	ENST00000342988	NM_005359.5	135	Cga/Tga																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149962	202149962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	95	436	0	ENST00000358485.4:c.1403G>A	p.Cys468Tyr	p.C468Y	ENST00000358485	NM_001080125.1	468	tGt/tAt																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44910975	44910975	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	192	699	2	ENST00000377967.4:c.676G>T	p.Glu226Ter	p.E226*	ENST00000377967	NM_021140.2	226	Gaa/Taa																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457681	67457682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	168	529	0	ENST00000327367.4:c.492dup	p.Asn165Ter	p.N165*	ENST00000327367	NM_005902.3	164	act/acTt																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38064155	38064155	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	294	513	2	ENST00000250448.2:c.23A>T	p.Glu8Val	p.E8V	ENST00000250448	NM_004496.3	8	gAa/gTa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624292	89624321	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTAGACTTGACCTGTATCCATTTCTGCGG	CTTAGACTTGACCTGTATCCATTTCTGCGG	-			P-0012632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	75	276	0	ENST00000371953.3:c.68_79+18del		p.X23_splice	ENST00000371953	NM_000314.4	23																																													NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164858	36164859	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCGCGGGGAACT			P-0012632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	128	347	0	ENST00000300305.3:c.1004_1016dup	p.Pro340ValfsTer264	p.P340Vfs*264	ENST00000300305		339	ctg/ctAGTTCCCCGCGCTg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68867178	68867196	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCCTTCTTCTTTAGAATC	TCCCTTCTTCTTTAGAATC	-			P-0012632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	268	218	0	ENST00000261769.5:c.2440-14_2444del		p.X814_splice	ENST00000261769	NM_004360.3	814																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0010852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	349	419	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577567	7577568	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	CACATGTAGTTGT			P-0010852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	358	464	0	ENST00000269305.4:c.701_713dup	p.Cys238Ter	p.C238*	ENST00000269305	NM_001126112.2	238	tgt/tgACAACTACATGTGt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575172	48575184	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTGATAGTGTC	ATGTGATAGTGTC	TGT			P-0010852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	210	405	0	ENST00000342988.3:c.366_378delinsTGT	p.Lys122AsnfsTer4	p.K122Nfs*4	ENST00000342988	NM_005359.5	122	aaATGTGATAGTGTC/aaTGT																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	101	417	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061194	38061195	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTT			P-0012543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	109	253	0	ENST00000250448.2:c.794_795insAAG	p.Arg265_Phe266insSer	p.R265_F266insS	ENST00000250448	NM_004496.3	265	cgc/cgAAGc																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	124	549	3	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	26	481	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331																																													NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	38	430	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	14	243	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49427265	49427266	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	49	406	1	ENST00000301067.7:c.11220_11222dup	p.Gln3745dup	p.Q3745dup	ENST00000301067	NM_003482.3	3745	caa/caGCAa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	110	435	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173847	112173848	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	107	451	0	ENST00000257430.4:c.2563_2564dup	p.Arg856AsnfsTer6	p.R856Nfs*6	ENST00000257430	NM_000038.5	852	-/GA																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	20	755	2	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																												NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	102	450	2	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64129428	64129428	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61736650		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	31	509	0	ENST00000334205.4:c.860C>T	p.Ala287Val	p.A287V	ENST00000334205	NM_003942.2	287	gCg/gTg																																												NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	58	510	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49448407	49448408	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	27	513	0	ENST00000301067.7:c.303dup	p.Ser102GlufsTer6	p.S102Efs*6	ENST00000301067	NM_003482.3	101	-/G																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56161182	56161182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	71	449	0	ENST00000399503.3:c.1051C>T	p.Arg351Cys	p.R351C	ENST00000399503	NM_005921.1	351	Cgt/Tgt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	82	412	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	212	487	6	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	37	404	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																												NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	48	426	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																												NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187442854	187442854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	48	389	1	ENST00000232014.4:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000232014	NM_001130845.1	618	Cgt/Tgt																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16259852	16259852	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	39	512	0	ENST00000375759.3:c.7117A>G	p.Thr2373Ala	p.T2373A	ENST00000375759	NM_015001.2	2373	Aca/Gca																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65306989	65306989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	52	446	0	ENST00000342505.4:c.2588C>A	p.Thr863Asn	p.T863N	ENST00000342505	NM_002227.2	863	aCt/aAt																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	176015428	176015428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	55	515	1	ENST00000367669.3:c.1310C>T	p.Ala437Val	p.A437V	ENST00000367669	NM_022457.5	437	gCg/gTg																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16082943	16082943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	17	148	0	ENST00000281043.3:c.757A>G	p.Ser253Gly	p.S253G	ENST00000281043	NM_005378.4	253	Agt/Ggt																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99163159	99163159	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	98	507	2	ENST00000074304.5:c.1163+2T>C		p.X388_splice	ENST00000074304	NM_001134224.1	388																																													NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128044377	128044377	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	61	616	0	ENST00000285398.2:c.1244A>G	p.His415Arg	p.H415R	ENST00000285398	NM_000122.1	415	cAc/cGc																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202141632	202141632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	88	520	1	ENST00000358485.4:c.920G>A	p.Arg307Gln	p.R307Q	ENST00000358485	NM_001080125.1	307	cGg/cAg																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149917	202149917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	51	466	0	ENST00000358485.4:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000358485	NM_001080125.1	453	cCg/cTg																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209106796	209106796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	55	516	0	ENST00000345146.2:c.772G>A	p.Ala258Thr	p.A258T	ENST00000345146	NM_005896.2	258	Gct/Act																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212293208	212293208	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	20	297	0	ENST00000342788.4:c.2644A>G	p.Met882Val	p.M882V	ENST00000342788	NM_005235.2	882	Atg/Gtg																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227660957	227660957	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	51	560	0	ENST00000305123.5:c.2498A>C	p.His833Pro	p.H833P	ENST00000305123	NM_005544.2	833	cAc/cCc																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227663375	227663375	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	11	207	0	ENST00000305123.5:c.80A>G	p.Lys27Arg	p.K27R	ENST00000305123	NM_005544.2	27	aAa/aGa																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37091995	37091995	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	85	477	0	ENST00000231790.2:c.2122A>T	p.Ile708Phe	p.I708F	ENST00000231790	NM_000249.3	708	Att/Ttt																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49928016	49928016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	156	713	0	ENST00000296474.3:c.3712T>C	p.Tyr1238His	p.Y1238H	ENST00000296474	NM_002447.2	1238	Tac/Cac																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52696160	52696160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	45	492	0	ENST00000394830.3:c.517G>T	p.Val173Leu	p.V173L	ENST00000394830	NM_018313.4	173	Gtg/Ttg																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119720964	119720964	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	75	541	0	ENST00000316626.5:c.211T>C	p.Tyr71His	p.Y71H	ENST00000316626		71	Tat/Cat																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180038428	180038428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	34	575	0	ENST00000261937.6:c.3589G>T	p.Gly1197Cys	p.G1197C	ENST00000261937	NM_182925.4	1197	Ggc/Tgc																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	394893	394893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	41	351	0	ENST00000380956.4:c.289C>A	p.Leu97Met	p.L97M	ENST00000380956	NM_001195286.1	97	Ctg/Atg																																												NEWRECORD																																		
HIST1H2BD	0	MSKCC	GRCh37	6	26158605	26158605	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	24	205	0	ENST00000289316.2:c.208A>G	p.Ile70Val	p.I70V	ENST00000289316	NM_138720.2	70	Atc/Gtc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30671994	30671994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	35	692	0	ENST00000376406.3:c.4966G>A	p.Ala1656Thr	p.A1656T	ENST00000376406	NM_014641.2	1656	Gca/Aca																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30679708	30679708	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	50	590	0	ENST00000376406.3:c.2011G>T	p.Gly671Ter	p.G671*	ENST00000376406	NM_014641.2	671	Gga/Tga																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93956659	93956659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	52	818	0	ENST00000369303.4:c.2577G>T	p.Met859Ile	p.M859I	ENST00000369303	NM_004440.3	859	atG/atT																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94066534	94066534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	115	695	3	ENST00000369303.4:c.1225G>A	p.Ala409Thr	p.A409T	ENST00000369303	NM_004440.3	409	Gct/Act																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117658485	117658485	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	49	282	0	ENST00000368508.3:c.5098T>C	p.Tyr1700His	p.Y1700H	ENST00000368508	NM_002944.2	1700	Tac/Cac																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	161969968	161969968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	41	494	1	ENST00000366898.1:c.1001G>A	p.Arg334His	p.R334H	ENST00000366898	NM_004562.2	334	cGc/cAc																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2951847	2951847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	54	512	0	ENST00000396946.4:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000396946	NM_032415.4	1035	Gaa/Aaa																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2951862	2951862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	24	484	0	ENST00000396946.4:c.3088A>G	p.Asn1030Asp	p.N1030D	ENST00000396946	NM_032415.4	1030	Aac/Gac																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8636784	8636784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	44	459	0	ENST00000356435.5:c.125C>T	p.Ser42Phe	p.S42F	ENST00000356435		42	tCt/tTt																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133759443	133759443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	44	747	0	ENST00000318560.5:c.1766G>A	p.Arg589His	p.R589H	ENST00000318560	NM_005157.4	589	cGc/cAc																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77070034	77070034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	60	400	1	ENST00000356341.3:c.506C>T	p.Ala169Val	p.A169V	ENST00000356341	NM_002576.4	169	gCa/gTa																																												NEWRECORD																																		
H3F3C	0	MSKCC	GRCh37	12	31944961	31944961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	129	516	2	ENST00000340398.3:c.140C>T	p.Ala47Val	p.A47V	ENST00000340398	NM_001013699.2	47	gCg/gTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49432135	49432135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	52	599	0	ENST00000301067.7:c.9004G>A	p.Ala3002Thr	p.A3002T	ENST00000301067	NM_003482.3	3002	Gcc/Acc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56478923	56478923	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	52	574	0	ENST00000267101.3:c.379T>C	p.Ser127Pro	p.S127P	ENST00000267101	NM_001982.3	127	Tcc/Ccc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133252337	133252337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	108	481	0	ENST00000320574.5:c.1090G>T	p.Gly364Trp	p.G364W	ENST00000320574	NM_006231.2	364	Ggg/Tgg																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007688	45007688	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	65	413	1	ENST00000558401.1:c.135C>A	p.Cys45Ter	p.C45*	ENST00000558401	NM_004048.2	45	tgC/tgA																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66782067	66782067	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	33	457	0	ENST00000307102.5:c.1034A>C	p.Asn345Thr	p.N345T	ENST00000307102	NM_002755.3	345	aAc/aCc																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14029555	14029555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	15	205	1	ENST00000311895.7:c.1766G>A	p.Arg589Gln	p.R589Q	ENST00000311895	NM_005236.2	589	cGg/cAg																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56864597	56864597	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	69	656	1	ENST00000308159.5:c.1085G>T	p.Arg362Ile	p.R362I	ENST00000308159	NM_014669.4	362	aGa/aTa																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89346403	89346403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	52	617	0	ENST00000301030.4:c.6547G>T	p.Val2183Leu	p.V2183L	ENST00000301030	NM_001256183.1	2183	Gtg/Ttg																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89849325	89849325	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	52	607	0	ENST00000389301.3:c.1568T>A	p.Val523Asp	p.V523D	ENST00000389301	NM_000135.2	523	gTt/gAt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29664858	29664858	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	35	403	0	ENST00000358273.4:c.6664A>G	p.Thr2222Ala	p.T2222A	ENST00000358273	NM_001042492.2	2222	Acg/Gcg																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30325991	30325991	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	36	431	0	ENST00000322652.5:c.2189T>C	p.Val730Ala	p.V730A	ENST00000322652	NM_015355.2	730	gTt/gCt																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41246352	41246352	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	36	551	0	ENST00000357654.3:c.1196A>G	p.His399Arg	p.H399R	ENST00000357654	NM_007294.3	399	cAt/cGt																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119014	70119014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	26	470	0	ENST00000245479.2:c.586A>G	p.Thr196Ala	p.T196A	ENST00000245479	NM_000346.3	196	Acg/Gcg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120178	70120178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	33	263	2	ENST00000245479.2:c.1180C>T	p.Arg394Ter	p.R394*	ENST00000245479	NM_000346.3	394	Cga/Tga																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1612341	1612341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	69	690	1	ENST00000344749.5:c.1678C>T	p.Arg560Trp	p.R560W	ENST00000344749	NM_001136139.2	560	Cgg/Tgg																																												NEWRECORD																																		
GNA11	0	MSKCC	GRCh37	19	3110228	3110228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	46	597	2	ENST00000078429.4:c.218G>A	p.Arg73His	p.R73H	ENST00000078429	NM_002067.2	73	cGc/cAc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15355121	15355121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	26	452	0	ENST00000263377.2:c.2502G>T	p.Glu834Asp	p.E834D	ENST00000263377	NM_058243.2	834	gaG/gaT																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41743944	41743944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	35	627	0	ENST00000301178.4:c.879G>T	p.Gln293His	p.Q293H	ENST00000301178	NM_021913.4	293	caG/caT																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45860903	45860903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	48	582	0	ENST00000391945.4:c.1292C>A	p.Pro431His	p.P431H	ENST00000391945	NM_000400.3	431	cCc/cAc																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52723079	52723079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	11	238	0	ENST00000322088.6:c.1264G>A	p.Ala422Thr	p.A422T	ENST00000322088	NM_014225.5	422	Gcc/Acc																																												NEWRECORD																																		
BCL2L1	0	MSKCC	GRCh37	20	30309568	30309568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	32	528	1	ENST00000307677.4:c.454G>A	p.Val152Met	p.V152M	ENST00000307677	NM_138578.1	152	Gtg/Atg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41408879	41408879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	28	527	1	ENST00000373198.4:c.547C>T	p.Arg183Trp	p.R183W	ENST00000373198	NM_133170.3	183	Cgg/Tgg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53250089	53250089	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	72	321	0	ENST00000375401.3:c.160C>T	p.Pro54Ser	p.P54S	ENST00000375401	NM_004187.3	54	Cca/Tca																																												NEWRECORD																																		
XIAP	0	MSKCC	GRCh37	X	123019579	123019579	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	94	351	0	ENST00000355640.3:c.67T>C	p.Phe23Leu	p.F23L	ENST00000355640		23	Ttt/Ctt																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18491389	18491390	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	50	483	0	ENST00000266497.5:c.1309dupA	p.Ile437AsnfsTer19	p.I437Nfs*19	ENST00000266497		434	-/A																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30686315	30686316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	102	393	0	ENST00000359013.4:c.250dup	p.Ser84PhefsTer4	p.S84Ffs*4	ENST00000359013	NM_001024847.2	82	-/T																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176721164	176721165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	16	310	0	ENST00000439151.2:c.6801dup	p.Ala2268SerfsTer13	p.A2268Sfs*13	ENST00000439151	NM_022455.4	2265	-/A																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52637539	52637540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	34	418	0	ENST00000394830.3:c.2776dup	p.Arg926LysfsTer4	p.R926Kfs*4	ENST00000394830	NM_018313.4	926	aga/aAga																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41246158	41246158	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	52	440	0	ENST00000357654.3:c.1390del	p.Thr464ProfsTer11	p.T464Pfs*11	ENST00000357654	NM_007294.3	464	Acc/cc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56184150	56184150	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	62	458	0	ENST00000399503.3:c.4359del	p.Lys1453AsnfsTer8	p.K1453Nfs*8	ENST00000399503	NM_005921.1	1452	gAa/ga																																												NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	77	566	2	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411001	63411002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	94	296	0	ENST00000330258.3:c.2165dup	p.Gln723ProfsTer3	p.Q723Pfs*3	ENST00000330258	NM_152424.3	722	ttc/ttTc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16029437	16029439	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	66	497	0	ENST00000268712.3:c.1591_1593delGAA	p.Glu531del	p.E531del	ENST00000268712	NM_006311.3	531	GAA/-																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16022738	16022738	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	84	467	4	ENST00000268712.3:c.1914delA	p.Gly639ValfsTer2	p.G639Vfs*2	ENST00000268712	NM_006311.3	638	aaA/aa																																												NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	34	604	1	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121434361	121434361	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	36	356	0	ENST00000257555.6:c.1129delC	p.Leu377SerfsTer7	p.L377Sfs*7	ENST00000257555		375	ggC/gg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27097808	27097808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	48	392	0	ENST00000324856.7:c.3399del	p.Ser1134LeufsTer27	p.S1134Lfs*27	ENST00000324856	NM_006015.4	1133	Ccc/cc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16202752	16202753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	54	553	1	ENST00000375759.3:c.465dup	p.Thr156AspfsTer5	p.T156Dfs*5	ENST00000375759	NM_015001.2	154	cgg/cGgg																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94209523	94209523	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	65	563	0	ENST00000323929.3:c.591del	p.Val198Ter	p.V198*	ENST00000323929	NM_005591.3	197	aaA/aa																																												NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	38	392	1	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																												NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	51	809	0	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042278	42042278	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	61	915	0	ENST00000219905.7:c.6474del	p.Glu2160ArgfsTer19	p.E2160Rfs*19	ENST00000219905	NM_001164273.1	2158	gCc/gc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46211615	46211615	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	54	487	0	ENST00000334344.6:c.585del	p.Asp196IlefsTer19	p.D196Ifs*19	ENST00000334344	NM_152641.2	194	gAa/ga																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61149655	61149656	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	18	204	0	ENST00000295025.8:c.1851dup	p.Gln618SerfsTer8	p.Q618Sfs*8	ENST00000295025	NM_002908.2	615	-/T																																												NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	57	564	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																												NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	56	500	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58734176	58734177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	69	774	0	ENST00000305921.3:c.1238dup	p.Cys414MetfsTer20	p.C414Mfs*20	ENST00000305921	NM_003620.3	412	tcc/tCcc																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135785963	135785964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	28	362	0	ENST00000298552.3:c.1257dupC	p.Arg420GlnfsTer22	p.R420Qfs*22	ENST00000298552	NM_001162426.1	419	-/C																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874013	151874013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	65	564	2	ENST00000262189.6:c.8525delA	p.Asn2842MetfsTer21	p.N2842Mfs*21	ENST00000262189	NM_170606.2	2842	aAt/at																																												NEWRECORD																																		
BCL10	0	MSKCC	GRCh37	1	85733413	85733414	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	65	905	0	ENST00000370580.1:c.598dup	p.Ala200GlyfsTer20	p.A200Gfs*20	ENST00000370580	NM_003921.4	200	gct/gGct																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36932274	36932275	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	47	822	0	ENST00000361632.4:c.2194dup	p.Asp732GlyfsTer40	p.D732Gfs*40	ENST00000361632		732	gac/gGac																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46531827	46531827	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	74	469	0	ENST00000262741.5:c.520A>T	p.Ile174Phe	p.I174F	ENST00000262741	NM_003629.3	174	Att/Ttt																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206667324	206667324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	60	303	0	ENST00000367120.3:c.2117G>T	p.Arg706Leu	p.R706L	ENST00000367120	NM_014002.3	706	cGg/cTg																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143007332	143007332	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	84	441	0	ENST00000262992.4:c.2452A>T	p.Arg818Ter	p.R818*	ENST00000262992	NM_001101669.1	818	Aga/Tga																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131915589	131915589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	40	163	0	ENST00000265335.6:c.587G>T	p.Arg196Leu	p.R196L	ENST00000265335		196	cGt/cTt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117710626	117710626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	66	218	0	ENST00000368508.3:c.1646G>A	p.Gly549Asp	p.G549D	ENST00000368508	NM_002944.2	549	gGc/gAc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106515161	106515161	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	66	306	0	ENST00000359195.3:c.2304A>T	p.Lys768Asn	p.K768N	ENST00000359195	NM_002649.2	768	aaA/aaT																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128846052	128846052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	83	510	0	ENST00000249373.3:c.982G>T	p.Gly328Cys	p.G328C	ENST00000249373	NM_005631.4	328	Ggt/Tgt																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38283714	38283714	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	58	285	0	ENST00000425967.3:c.764A>G	p.Asp255Gly	p.D255G	ENST00000425967	NM_001174067.1	255	gAc/gGc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8465473	8465473	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	54	319	0	ENST00000356435.5:c.3707C>A	p.Ala1236Glu	p.A1236E	ENST00000356435		1236	gCa/gAa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8518406	8518406	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			97	27	101	0	ENST00000356435.5:c.985C>G	p.Pro329Ala	p.P329A	ENST00000356435		329	Cct/Gct																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115760	8115760	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	93	535	0	ENST00000346208.3:c.1106C>A	p.Ser369Tyr	p.S369Y	ENST00000346208		369	tCt/tAt																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43604479	43604479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	60	287	0	ENST00000355710.3:c.1064G>T	p.Arg355Met	p.R355M	ENST00000355710	NM_020975.4	355	aGg/aTg																																												NEWRECORD																																		
HRAS	0	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	163	310	0	ENST00000311189.7:c.38G>T	p.Gly13Val	p.G13V	ENST00000311189		13	gGt/gTt																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17742507	17742507	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	88	516	0	ENST00000250003.3:c.689A>T	p.Tyr230Phe	p.Y230F	ENST00000250003	NM_002478.4	230	tAc/tTc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118343274	118343274	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	38	256	0	ENST00000534358.1:c.1400A>T	p.Gln467Leu	p.Q467L	ENST00000534358	NM_005933.3	467	cAg/cTg																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28623608	28623608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	58	188	0	ENST00000241453.7:c.949G>T	p.Val317Leu	p.V317L	ENST00000241453	NM_004119.2	317	Gta/Tta																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110436404	110436404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	41	210	1	ENST00000375856.3:c.1997G>T	p.Gly666Val	p.G666V	ENST00000375856	NM_003749.2	666	gGg/gTg																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81558951	81558951	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	50	276	0	ENST00000298171.2:c.544C>A	p.Leu182Met	p.L182M	ENST00000298171	NM_000369.2	182	Ctg/Atg																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99467225	99467225	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	64	322	0	ENST00000268035.6:c.2606A>C	p.Tyr869Ser	p.Y869S	ENST00000268035	NM_000875.3	869	tAc/tCc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	67	164	1	ENST00000269305.4:c.524G>T	p.Arg175Leu	p.R175L	ENST00000269305	NM_001126112.2	175	cGc/cTc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29559870	29559870	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	46	205	0	ENST00000358273.4:c.3467A>T	p.Asn1156Ile	p.N1156I	ENST00000358273	NM_001042492.2	1156	aAc/aTc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29560181	29560181	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	38	181	0	ENST00000358273.4:c.3658G>T	p.Glu1220Ter	p.E1220*	ENST00000358273	NM_001042492.2	1220	Gaa/Taa																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40730934	40730934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	25	106	0	ENST00000373198.4:c.3601C>A	p.Leu1201Ile	p.L1201I	ENST00000373198	NM_133170.3	1201	Ctc/Atc																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	161969982	161969982	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	80	528	0	ENST00000366898.1:c.987del	p.Val330CysfsTer105	p.V330Cfs*105	ENST00000366898	NM_004562.2	329	ggC/gg																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65560477	65560477	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	79	295	0	ENST00000358664.4:c.120delA	p.Asp41ThrfsTer24	p.D41Tfs*24	ENST00000358664	NM_002382.4	40	aaA/aa																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	89	331	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41547992	41547993	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	45	165	0	ENST00000263253.7:c.2974dup	p.Thr992AsnfsTer10	p.T992Nfs*10	ENST00000263253	NM_001429.3	991	-/A																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24143268	24143269	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	83	460	1	ENST00000263121.7:c.500_500+1delinsTT		p.X167_splice	ENST00000263121	NM_003073.3	167																																													NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88476318	88476319	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0000726-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	43	281	0	ENST00000360948.2:c.1813_1814delinsTT	p.Gly605Leu	p.G605L	ENST00000360948	NM_001012338.2	605	GGa/TTa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	90	511	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86659323	86659323	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	49	475	0	ENST00000274376.6:c.1610+2T>C		p.X537_splice	ENST00000274376	NM_002890.2	537																																													NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971177	21971211	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCGCCACTCGGGCGCTGCCCATCATCATGACCTGC	CCGCCACTCGGGCGCTGCCCATCATCATGACCTGC	-			P-0006940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	29	181	0	ENST00000304494.5:c.151-4_181del		p.X51_splice	ENST00000304494	NM_000077.4	51																																													NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971177	21971211	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCGCCACTCGGGCGCTGCCCATCATCATGACCTGC	CCGCCACTCGGGCGCTGCCCATCATCATGACCTGC	-			P-0006940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	29	181	0	ENST00000304494.5:c.151-4_181del		p.X51_splice	ENST00000304494	NM_000077.4	51																																													NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971177	21971211	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCGCCACTCGGGCGCTGCCCATCATCATGACCTGC	CCGCCACTCGGGCGCTGCCCATCATCATGACCTGC	-			P-0006940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	29	181	0	ENST00000304494.5:c.151-4_181del		p.X51_splice	ENST00000304494	NM_000077.4	51																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577551	7577552	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATGCAGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGT			P-0006940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	40	629	0	ENST00000269305.4:c.683_729dup	p.Gly244ThrfsTer19	p.G244Tfs*19	ENST00000269305	NM_001126112.2	243	-/ACTGTACCACCATCCACTACAACTACATGTGTAACAGTTCCTGCATG																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0009086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	153	269	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	254	449	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30134513	30134514	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCC			P-0009086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	26	283	0	ENST00000263025.4:c.15_17dupGGC	p.Ala6dup	p.A6dup	ENST00000263025	NM_002746.2	6	gct/gcGGCt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105920	27105920	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	288	292	0	ENST00000324856.7:c.5531G>A	p.Trp1844Ter	p.W1844*	ENST00000324856	NM_006015.4	1844	tGg/tAg																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140477813	140477813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	365	445	0	ENST00000288602.6:c.1495A>G	p.Lys499Glu	p.K499E	ENST00000288602	NM_004333.4	499	Aaa/Gaa																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1621855	1621855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	130	467	0	ENST00000344749.5:c.937G>A	p.Gly313Arg	p.G313R	ENST00000344749	NM_001136139.2	313	Ggg/Agg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	302	454	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	529	621	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15291056	15291056	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1302	586	711	0	ENST00000263388.2:c.3154G>C	p.Glu1052Gln	p.E1052Q	ENST00000263388	NM_000435.2	1052	Gag/Cag																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15292602	15292603	+	missense_variant	Missense_Mutation	DNP	CA	CA	TC			P-0014558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	432	582	2	ENST00000263388.2:c.2576_2577delinsGA	p.Leu859Arg	p.L859R	ENST00000263388	NM_000435.2	859	cTG/cGA																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151864236	151864239	+	frameshift_variant	Frame_Shift_Del	DEL	CTAG	CTAG	-			P-0014558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	206	197	0	ENST00000262189.6:c.9742_9745del	p.Leu3248AsnfsTer13	p.L3248Nfs*13	ENST00000262189	NM_170606.2	3248	CTAGaa/aa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151900080	151900081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014558-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	241	294	0	ENST00000262189.6:c.4030dup	p.Ile1344AsnfsTer11	p.I1344Nfs*11	ENST00000262189	NM_170606.2	1344	ata/aAta																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	88	188	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	87	142	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	93	216	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	93	216	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115118835	115118835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	135	248	0	ENST00000257566.3:c.506G>T	p.Arg169Leu	p.R169L	ENST00000257566	NM_016569.3	169	cGg/cTg																																												NEWRECORD																																		
ID3	0	MSKCC	GRCh37	1	23885835	23885835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	156	391	0	ENST00000374561.5:c.83G>T	p.Arg28Leu	p.R28L	ENST00000374561	NM_002167.4	28	cGa/cTa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099093	27099093	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	129	227	0	ENST00000324856.7:c.3509A>C	p.His1170Pro	p.H1170P	ENST00000324856	NM_006015.4	1170	cAc/cCc																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36935296	36935296	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs144323240		P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	162	529	0	ENST00000361632.4:c.1431G>T	p.Trp477Cys	p.W477C	ENST00000361632		477	tgG/tgT																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458225	120458225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	44	170	0	ENST00000256646.2:c.7120C>T	p.His2374Tyr	p.H2374Y	ENST00000256646	NM_024408.3	2374	Cat/Tat																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29450512	29450512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	83	319	0	ENST00000389048.3:c.2842C>A	p.Pro948Thr	p.P948T	ENST00000389048	NM_004304.4	948	Ccc/Acc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134670645	134670645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	161	341	0	ENST00000398015.3:c.556C>T	p.Leu186Phe	p.L186F	ENST00000398015	NM_004441.4	186	Ctt/Ttt																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142204103	142204103	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	84	248	0	ENST00000350721.4:c.6100G>C	p.Glu2034Gln	p.E2034Q	ENST00000350721	NM_001184.3	2034	Gaa/Caa																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55138612	55138612	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202072966		P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	103	189	0	ENST00000257290.5:c.1289G>A	p.Gly430Glu	p.G430E	ENST00000257290	NM_006206.4	430	gGa/gAa																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30675664	30675664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	129	432	0	ENST00000376406.3:c.2692G>A	p.Glu898Lys	p.E898K	ENST00000376406	NM_014641.2	898	Gag/Aag																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2949704	2949704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	132	302	0	ENST00000396946.4:c.3240G>C	p.Glu1080Asp	p.E1080D	ENST00000396946	NM_032415.4	1080	gaG/gaC																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45003799	45003799	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	116	226	0	ENST00000558401.1:c.55G>T	p.Glu19Ter	p.E19*	ENST00000558401	NM_004048.2	19	Gag/Tag																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29588803	29588803	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	109	300	0	ENST00000358273.4:c.4652A>C	p.His1551Pro	p.H1551P	ENST00000358273	NM_001042492.2	1551	cAc/cCc																																												NEWRECORD																																		
HOXB13	0	MSKCC	GRCh37	17	46805846	46805846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	165	509	1	ENST00000290295.7:c.110C>T	p.Pro37Leu	p.P37L	ENST00000290295	NM_006361.5	37	cCa/cTa																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10600472	10600472	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	122	293	0	ENST00000171111.5:c.1383C>G	p.Ile461Met	p.I461M	ENST00000171111	NM_203500.1	461	atC/atG																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15298020	15298020	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	123	247	0	ENST00000263388.2:c.1736G>T	p.Cys579Phe	p.C579F	ENST00000263388	NM_000435.2	579	tGc/tTc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41988676	41988676	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	176	455	0	ENST00000219905.7:c.1468del	p.Met490CysfsTer33	p.M490Cfs*33	ENST00000219905	NM_001164273.1	490	Atg/tg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1223038	1223082	+	inframe_deletion	In_Frame_Del	DEL	CCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTA	CCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTA	-			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	130	265	0	ENST00000326873.7:c.976_1020del	p.Pro326_Tyr340del	p.P326_Y340del	ENST00000326873	NM_000455.4	325	agCCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTAc/agc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539568	187539568	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	71	210	0	ENST00000441802.2:c.8172del	p.Ile2725SerfsTer28	p.I2725Sfs*28	ENST00000441802	NM_005245.3	2724	ctC/ct																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1223087	1223088	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	146	330	0	ENST00000326873.7:c.1025dup	p.Asp343GlyfsTer17	p.D343Gfs*17	ENST00000326873	NM_000455.4	342	gag/gAag																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435328	18435329	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	81	221	0	ENST00000266497.5:c.313_314delinsAA	p.Pro105Lys	p.P105K	ENST00000266497		105	CCa/AAa																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41100956	41100957	+	missense_variant	Missense_Mutation	DNP	GG	GG	TC			P-0004030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	62	154	0	ENST00000373198.4:c.1399_1400delinsGA	p.Pro467Asp	p.P467D	ENST00000373198	NM_133170.3	467	CCc/GAc																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123210181	123210181	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	202	464	1	ENST00000218089.9:c.2534-1G>T		p.X845_splice	ENST00000218089	NM_001042749.1	845																																													NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12871058	12871059	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	193	195	0	ENST00000228872.4:c.288dup	p.Gly97ArgfsTer28	p.G97Rfs*28	ENST00000228872	NM_004064.3	95	-/A																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	89	477	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	108	587	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	51	405	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65560514	65560514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	68	403	0	ENST00000358664.4:c.83A>G	p.His28Arg	p.H28R	ENST00000358664	NM_002382.4	28	cAt/cGt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	82	495	1	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713688	30713688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	37	237	0	ENST00000359013.4:c.1088C>T	p.Thr363Met	p.T363M	ENST00000359013	NM_001024847.2	363	aCg/aTg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11298579	11298579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	81	445	0	ENST00000361445.4:c.1882C>T	p.Arg628Cys	p.R628C	ENST00000361445	NM_004958.3	628	Cgc/Tgc																																												NEWRECORD																																		
MUTYH	0	MSKCC	GRCh37	1	45800117	45800117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	107	565	0	ENST00000372115.3:c.103G>T	p.Gly35Trp	p.G35W	ENST00000372115	NM_001048171.1	35	Ggg/Tgg																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72890203	72890203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	83	448	1	ENST00000325599.8:c.479G>A	p.Arg160Gln	p.R160Q	ENST00000325599	NM_018130.2	160	cGg/cAg																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149497351	149497351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	84	380	0	ENST00000261799.4:c.2967G>T	p.Gln989His	p.Q989H	ENST00000261799	NM_002609.3	989	caG/caT																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117665372	117665372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	73	419	0	ENST00000368508.3:c.4375G>A	p.Ala1459Thr	p.A1459T	ENST00000368508	NM_002944.2	1459	Gcc/Acc																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128845135	128845135	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	86	574	0	ENST00000249373.3:c.629T>C	p.Val210Ala	p.V210A	ENST00000249373	NM_005631.4	210	gTg/gCg																																												NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128750639	128750639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	82	462	1	ENST00000377970.2:c.176C>T	p.Ala59Val	p.A59V	ENST00000377970	NM_002467.4	59	gCg/gTg																																												NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128750770	128750770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	65	482	1	ENST00000377970.2:c.307G>A	p.Gly103Ser	p.G103S	ENST00000377970	NM_002467.4	103	Ggc/Agc																																												NEWRECORD																																		
CCND1	0	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	76	385	0	ENST00000227507.2:c.859C>G	p.Pro287Ala	p.P287A	ENST00000227507	NM_053056.2	287	Ccc/Gcc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49435215	49435215	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	38	181	0	ENST00000301067.7:c.6338T>C	p.Leu2113Pro	p.L2113P	ENST00000301067	NM_003482.3	2113	cTg/cCg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2107125	2107125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	88	506	3	ENST00000219476.3:c.794G>A	p.Gly265Asp	p.G265D	ENST00000219476	NM_000548.3	265	gGc/gAc																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56868043	56868043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	96	537	0	ENST00000308159.5:c.1541G>C	p.Ser514Thr	p.S514T	ENST00000308159	NM_014669.4	514	aGc/aCc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89346127	89346127	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	15	194	0	ENST00000301030.4:c.6823G>A	p.Ala2275Thr	p.A2275T	ENST00000301030	NM_001256183.1	2275	Gcc/Acc																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89811395	89811395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	105	582	0	ENST00000389301.3:c.3598C>A	p.Leu1200Ile	p.L1200I	ENST00000389301	NM_000135.2	1200	Cta/Ata																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29556289	29556289	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	107	592	0	ENST00000358273.4:c.2656A>G	p.Asn886Asp	p.N886D	ENST00000358273	NM_001042492.2	886	Aac/Gac																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5243999	5243999	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144686472		P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	67	469	1	ENST00000357368.4:c.1483G>A	p.Glu495Lys	p.E495K	ENST00000357368	NM_002850.3	495	Gag/Aag																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178928078	178928080	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	54	413	0	ENST00000263967.3:c.1359_1361delAGA	p.Glu453del	p.E453del	ENST00000263967	NM_006218.2	452	ttAGAa/tta																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993730	72993731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	87	644	1	ENST00000268489.5:c.314dup	p.Pro106AlafsTer13	p.P106Afs*13	ENST00000268489	NM_006885.3	105	ccg/ccCg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119017	70119018	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	64	437	0	ENST00000245479.2:c.591_592del	p.Ile198LeufsTer53	p.I198Lfs*53	ENST00000245479	NM_000346.3	197	CAc/c																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	109	750	2	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157511329	157511329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	36	253	0	ENST00000346085.5:c.3851delG	p.Gly1284GlufsTer2	p.G1284Efs*2	ENST00000346085	NM_020732.3	1283	Ggg/gg																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149460515	149460515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	167	217	0	ENST00000286301.3:c.122G>A	p.Arg41Gln	p.R41Q	ENST00000286301	NM_005211.3	41	cGa/cAa																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31023052	31023052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148575778		P-0004458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	116	324	0	ENST00000375687.4:c.2537G>A	p.Ser846Asn	p.S846N	ENST00000375687	NM_015338.5	846	aGt/aAt																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53230752	53230752	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	241	227	0	ENST00000375401.3:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000375401	NM_004187.3	681	Cga/Tga																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643328	52643329	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CGATTCATCCTTCTTGCTCGTTCCAATACTT			P-0004458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	30	272	0	ENST00000394830.3:c.2537_2567dup	p.Thr857SerfsTer17	p.T857Sfs*17	ENST00000394830	NM_018313.4	856	cgg/cgAAGTATTGGAACGAGCAAGAAGGATGAATCGg																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123197853	123197853	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	46	195	0	ENST00000218089.9:c.1977del	p.Asp659GlufsTer33	p.D659Efs*33	ENST00000218089	NM_001042749.1	659	gaT/ga																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183865	10183866	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0004458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	83	76	0	ENST00000256474.2:c.335dup	p.Tyr112Ter	p.Y112*	ENST00000256474	NM_000551.3	112	tac/tAac																																												NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8108259	8108267	+	inframe_deletion	In_Frame_Del	DEL	GAGACCTGG	GAGACCTGG	-			P-0004458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	86	238	0	ENST00000585124.1:c.957_965del	p.Gln320_Ser322del	p.Q320_S322del	ENST00000585124	NM_004217.3	319	gcCCAGGTCTCa/gca																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	94	664	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55221830	55221830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	128	964	3	ENST00000275493.2:c.874G>T	p.Val292Leu	p.V292L	ENST00000275493	NM_005228.3	292	Gtg/Ttg																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546997	9546997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	45	378	0	ENST00000353224.5:c.1025C>A	p.Pro342His	p.P342H	ENST00000353224	NM_177990.2	342	cCt/cAt																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193099362	193099362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	77	536	0	ENST00000367435.3:c.296A>G	p.Asn99Ser	p.N99S	ENST00000367435	NM_024529.4	99	aAt/aGt																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64137748	64137748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	89	765	1	ENST00000334205.4:c.1849G>T	p.Gly617Trp	p.G617W	ENST00000334205	NM_003942.2	617	Ggg/Tgg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108121525	108121526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	74	593	0	ENST00000278616.4:c.1333_1334insT	p.Gln445LeufsTer42	p.Q445Lfs*42	ENST00000278616	NM_000051.3	445	caa/cTaa																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58677993	58677993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	66	466	0	ENST00000305921.3:c.218G>T	p.Arg73Leu	p.R73L	ENST00000305921	NM_003620.3	73	cGa/cTa																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15383775	15383775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	71	865	4	ENST00000263377.2:c.136C>T	p.Pro46Ser	p.P46S	ENST00000263377	NM_058243.2	46	Ccg/Tcg																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25466853	25466853	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	41	568	2	ENST00000264709.3:c.1852-2A>G		p.X618_splice	ENST00000264709	NM_175629.2	618																																													NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220440180	220440180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	109	1030	1	ENST00000243786.2:c.1033G>A	p.Asp345Asn	p.D345N	ENST00000243786	NM_002191.3	345	Gat/Aat																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187510024	187510024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	76	700	0	ENST00000441802.2:c.13489G>C	p.Asp4497His	p.D4497H	ENST00000441802	NM_005245.3	4497	Gat/Cat																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140439746	140439746	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	48	468	0	ENST00000288602.6:c.1993A>G	p.Ile665Val	p.I665V	ENST00000288602	NM_004333.4	665	Ata/Gta																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90994952	90994952	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	99	559	0	ENST00000265433.3:c.169C>G	p.Leu57Val	p.L57V	ENST00000265433	NM_002485.4	57	Ctg/Gtg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76918990	76918990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	112	423	0	ENST00000373344.5:c.4001C>G	p.Pro1334Arg	p.P1334R	ENST00000373344	NM_000489.3	1334	cCa/cGa																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	19	324	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29911146	29911146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	12	312	0	ENST00000376809.5:c.445G>A	p.Ala149Thr	p.A149T	ENST00000376809	NM_002116.7	149	Gcc/Acc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32169934	32169934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	19	699	0	ENST00000375023.3:c.3674G>A	p.Arg1225Gln	p.R1225Q	ENST00000375023	NM_004557.3	1225	cGg/cAg																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81609338	81609338	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	12	628	0	ENST00000298171.2:c.939del	p.Lys313AsnfsTer3	p.K313Nfs*3	ENST00000298171	NM_000369.2	312	agA/ag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174583	112174584	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0008159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	14	587	0	ENST00000257430.4:c.3295_3296delGT	p.Val1099PhefsTer19	p.V1099Ffs*19	ENST00000257430	NM_000038.5	1098	TGt/t																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105927	27105928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	18	365	0	ENST00000324856.7:c.5540dup	p.Gly1848TrpfsTer6	p.G1848Wfs*6	ENST00000324856	NM_006015.4	1846	-/G																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576919	7576919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	738	392	0	ENST00000269305.4:c.927delC	p.Asn310ThrfsTer35	p.N310Tfs*35	ENST00000269305	NM_001126112.2	309	ccC/cc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117708153	117708153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	367	374	2	ENST00000368508.3:c.2024C>T	p.Pro675Leu	p.P675L	ENST00000368508	NM_002944.2	675	cCa/cTa																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133257865	133257865	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	246	352	1	ENST00000320574.5:c.63G>T	p.Arg21Ser	p.R21S	ENST00000320574	NM_006231.2	21	agG/agT																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41961958	41961958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	526	726	1	ENST00000219905.7:c.866G>T	p.Gly289Val	p.G289V	ENST00000219905	NM_001164273.1	289	gGt/gTt																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47679277	47679277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1372	73	454	3	ENST00000347630.2:c.930C>A	p.Asp310Glu	p.D310E	ENST00000347630	NM_001007230.1	310	gaC/gaA																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49428671	49428671	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	807	486	0	ENST00000301067.7:c.10279del	p.Ala3427ProfsTer6	p.A3427Pfs*6	ENST00000301067	NM_003482.3	3427	Gcc/cc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145741450	145741451	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1562	423	613	0	ENST00000428558.2:c.1052dup	p.Asn352GlnfsTer20	p.N352Qfs*20	ENST00000428558	NM_004260.3	351	ggc/ggGc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	21	100	1	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193181212	193181212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	173	314	0	ENST00000367435.3:c.1048C>T	p.Pro350Ser	p.P350S	ENST00000367435	NM_024529.4	350	Ccc/Tcc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10599868	10599868	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	175	409	1	ENST00000171111.5:c.1708G>T	p.Gly570Ter	p.G570*	ENST00000171111	NM_203500.1	570	Gga/Tga																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	53	359	0	ENST00000245479.2:c.791G>A	p.Arg264Lys	p.R264K	ENST00000245479	NM_000346.3	264	aGa/aAa																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220437220	220437220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	65	543	0	ENST00000243786.2:c.124G>T	p.Gly42Trp	p.G42W	ENST00000243786	NM_002191.3	42	Ggg/Tgg																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36945043	36945043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	85	449	0	ENST00000361632.4:c.55C>A	p.Leu19Ile	p.L19I	ENST00000361632		19	Ctc/Atc																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65300318	65300318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	51	197	0	ENST00000342505.4:c.3392G>T	p.Cys1131Phe	p.C1131F	ENST00000342505	NM_002227.2	1131	tGc/tTc																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156845873	156845873	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	109	464	0	ENST00000524377.1:c.1503T>G	p.Cys501Trp	p.C501W	ENST00000524377	NM_002529.3	501	tgT/tgG																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204495523	204495523	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	148	292	0	ENST00000367182.3:c.114T>A	p.His38Gln	p.H38Q	ENST00000367182	NM_001278516.1	38	caT/caA																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204518424	204518424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	118	351	0	ENST00000367182.3:c.1087C>T	p.Arg363Ter	p.R363*	ENST00000367182	NM_001278516.1	363	Cga/Tga																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25466852	25466852	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	75	267	0	ENST00000264709.3:c.1852-1G>T		p.X618_splice	ENST00000264709	NM_175629.2	618																																													NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212578362	212578362	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	80	265	0	ENST00000342788.4:c.895G>T	p.Val299Leu	p.V299L	ENST00000342788	NM_005235.2	299	Gta/Tta																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225367741	225367741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	133	361	0	ENST00000264414.4:c.1426G>T	p.Asp476Tyr	p.D476Y	ENST00000264414	NM_003590.4	476	Gat/Tat																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47143043	47143043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	83	291	0	ENST00000409792.3:c.4920G>T	p.Trp1640Cys	p.W1640C	ENST00000409792	NM_014159.6	1640	tgG/tgT																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164215	47164215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	124	243	0	ENST00000409792.3:c.1911G>T	p.Lys637Asn	p.K637N	ENST00000409792	NM_014159.6	637	aaG/aaT																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71015147	71015147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	116	279	0	ENST00000318789.4:c.1783C>G	p.Leu595Val	p.L595V	ENST00000318789	NM_032682.5	595	Ctg/Gtg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259328	89259328	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	95	360	0	ENST00000336596.2:c.472G>T	p.Gly158Trp	p.G158W	ENST00000336596	NM_005233.5	158	Ggg/Tgg																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128200062	128200062	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	64	385	0	ENST00000341105.2:c.1243G>T	p.Glu415Ter	p.E415*	ENST00000341105	NM_032638.4	415	Gag/Tag																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134825398	134825398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	71	367	0	ENST00000398015.3:c.914C>A	p.Thr305Asn	p.T305N	ENST00000398015	NM_004441.4	305	aCc/aAc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142281672	142281672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	139	332	0	ENST00000350721.4:c.572C>T	p.Ser191Leu	p.S191L	ENST00000350721	NM_001184.3	191	tCa/tTa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187521515	187521515	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	59	153	0	ENST00000441802.2:c.11641-1G>A		p.X3881_splice	ENST00000441802	NM_005245.3	3881																																													NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35873648	35873648	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	117	307	0	ENST00000303115.3:c.604G>C	p.Glu202Gln	p.E202Q	ENST00000303115	NM_002185.3	202	Gag/Cag																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86675622	86675622	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	81	243	0	ENST00000274376.6:c.2558C>T	p.Ser853Leu	p.S853L	ENST00000274376	NM_002890.2	853	tCa/tTa																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131930682	131930682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	63	251	0	ENST00000265335.6:c.1915G>T	p.Glu639Ter	p.E639*	ENST00000265335		639	Gaa/Taa																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2974161	2974161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	96	334	0	ENST00000396946.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000396946	NM_032415.4	482	Gag/Aag																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729279	41729279	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	112	514	0	ENST00000242208.4:c.1250A>G	p.Asn417Ser	p.N417S	ENST00000242208	NM_002192.2	417	aAc/aGc																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729875	41729875	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	89	544	0	ENST00000242208.4:c.654G>T	p.Trp218Cys	p.W218C	ENST00000242208	NM_002192.2	218	tgG/tgT																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81372752	81372752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	132	298	0	ENST00000222390.5:c.782G>T	p.Arg261Leu	p.R261L	ENST00000222390	NM_000601.4	261	cGc/cTc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508185	106508185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	33	122	0	ENST00000359195.3:c.179A>G	p.His60Arg	p.H60R	ENST00000359195	NM_002649.2	60	cAc/cGc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116418854	116418854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	135	239	0	ENST00000397752.3:c.3365C>T	p.Ser1122Phe	p.S1122F	ENST00000397752	NM_000245.2	1122	tCc/tTc																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38271704	38271704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	65	339	3	ENST00000425967.3:c.2245C>A	p.Arg749Ser	p.R749S	ENST00000425967	NM_001174067.1	749	Cgc/Agc																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371618	55371618	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	49	235	0	ENST00000297316.4:c.308G>T	p.Gly103Val	p.G103V	ENST00000297316	NM_022454.3	103	gGc/gTc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145739030	145739030	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199562131		P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	100	222	0	ENST00000428558.2:c.2125C>T	p.Arg709Trp	p.R709W	ENST00000428558	NM_004260.3	709	Cgg/Tgg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8376024	8376024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	49	310	0	ENST00000356435.5:c.4573C>A	p.Pro1525Thr	p.P1525T	ENST00000356435		1525	Cca/Aca																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333293	70333293	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	97	350	0	ENST00000373644.4:c.1198G>C	p.Gly400Arg	p.G400R	ENST00000373644	NM_030625.2	400	Ggt/Cgt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246242	46246242	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	300	297	0	ENST00000334344.6:c.4336G>C	p.Asp1446His	p.D1446H	ENST00000334344	NM_152641.2	1446	Gat/Cat																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69210637	69210637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	410	324	0	ENST00000462284.1:c.220G>A	p.Asp74Asn	p.D74N	ENST00000462284	NM_002392.5	74	Gat/Aat																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133220449	133220449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	199	247	0	ENST00000320574.5:c.4264G>C	p.Asp1422His	p.D1422H	ENST00000320574	NM_006231.2	1422	Gac/Cac																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134724	41134724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	147	532	0	ENST00000379561.5:c.904C>T	p.His302Tyr	p.H302Y	ENST00000379561	NM_002015.3	302	Cac/Tac																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042428	42042428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	73	582	0	ENST00000219905.7:c.6623G>A	p.Cys2208Tyr	p.C2208Y	ENST00000219905	NM_001164273.1	2208	tGt/tAt																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42054540	42054540	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	131	424	0	ENST00000219905.7:c.7724G>C	p.Arg2575Thr	p.R2575T	ENST00000219905	NM_001164273.1	2575	aGa/aCa																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10274153	10274153	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	21	243	0	ENST00000330684.3:c.116T>G	p.Met39Arg	p.M39R	ENST00000330684	NM_001134407.1	39	aTg/aGg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72845577	72845577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	73	534	0	ENST00000268489.5:c.3763C>T	p.Pro1255Ser	p.P1255S	ENST00000268489	NM_006885.3	1255	Ccc/Tcc																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89806439	89806439	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	157	373	0	ENST00000389301.3:c.3897G>C	p.Lys1299Asn	p.K1299N	ENST00000389301	NM_000135.2	1299	aaG/aaC																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37682139	37682139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	123	282	0	ENST00000447079.4:c.3330G>T	p.Gln1110His	p.Q1110H	ENST00000447079	NM_015083.1	1110	caG/caT																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41209094	41209094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	155	445	0	ENST00000357654.3:c.5252G>T	p.Arg1751Leu	p.R1751L	ENST00000357654	NM_007294.3	1751	cGa/cTa																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58678098	58678098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	113	348	0	ENST00000305921.3:c.323G>A	p.Gly108Asp	p.G108D	ENST00000305921	NM_003620.3	108	gGc/gAc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1223068	1223068	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	157	356	0	ENST00000326873.7:c.1005G>T	p.Met335Ile	p.M335I	ENST00000326873	NM_000455.4	335	atG/atT																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42794048	42794048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	125	286	0	ENST00000575354.2:c.1409G>T	p.Arg470Leu	p.R470L	ENST00000575354	NM_015125.3	470	cGg/cTg																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9523321	9523321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	93	354	0	ENST00000353224.5:c.1916G>T	p.Gly639Val	p.G639V	ENST00000353224	NM_177990.2	639	gGc/gTc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41408885	41408885	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	80	346	0	ENST00000373198.4:c.541G>T	p.Glu181Ter	p.E181*	ENST00000373198	NM_133170.3	181	Gag/Tag																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164509	36164509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	84	166	0	ENST00000300305.3:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000300305		456	Gag/Aag																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30077474	30077474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	108	243	0	ENST00000338641.4:c.1621G>A	p.Glu541Lys	p.E541K	ENST00000338641	NM_000268.3	541	Gaa/Aaa																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41525962	41525962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	153	346	0	ENST00000263253.7:c.1237G>T	p.Val413Leu	p.V413L	ENST00000263253	NM_001429.3	413	Gtg/Ttg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045518	47045518	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	96	179	0	ENST00000329236.7:c.2251G>T	p.Glu751Ter	p.E751*	ENST00000329236	NM_001204466.1	751	Gag/Tag																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52696179	52696179	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	150	484	0	ENST00000394830.3:c.498del	p.Gln167LysfsTer7	p.Q167Kfs*7	ENST00000394830	NM_018313.4	166	ggG/gg																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128047811	128047812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	129	367	0	ENST00000285398.2:c.509dup	p.Leu170PhefsTer9	p.L170Ffs*9	ENST00000285398	NM_000122.1	170	ttg/ttTg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412247	63412248	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	104	251	0	ENST00000330258.3:c.919dup	p.Asp307GlyfsTer17	p.D307Gfs*17	ENST00000330258	NM_152424.3	307	gac/gGac																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411279	63411280	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	89	240	0	ENST00000330258.3:c.1887_1888delinsTT	p.Gln629_Ala630delinsHisSer	p.Q629_A630delinsHS	ENST00000330258	NM_152424.3	629	caGGcc/caTTcc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579338	7579340	+	frameshift_variant	Frame_Shift_Del	DEL	CAG	CAG	AA			P-0004189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	90	239	0	ENST00000269305.4:c.347_349delinsTT	p.Ser116PhefsTer7	p.S116Ffs*7	ENST00000269305	NM_001126112.2	116	tCTGgg/tTTgg																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190728527	190728527	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	81	462	0	ENST00000441310.2:c.1915A>T	p.Ile639Phe	p.I639F	ENST00000441310	NM_000534.4	639	Att/Ttt																																												NEWRECORD																																		
FOXL2	0	MSKCC	GRCh37	3	138665359	138665359	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	160	531	0	ENST00000330315.3:c.206A>C	p.Glu69Ala	p.E69A	ENST00000330315	NM_023067.3	69	gAg/gCg																																												NEWRECORD																																		
CEBPA	0	MSKCC	GRCh37	19	33793116	33793116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	143	430	0	ENST00000498907.2:c.205G>T	p.Asp69Tyr	p.D69Y	ENST00000498907	NM_004364.3	69	Gac/Tac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577136	7577137	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	251	681	0	ENST00000269305.4:c.801dup	p.Asn268GlufsTer4	p.N268Efs*4	ENST00000269305	NM_001126112.2	267	-/G																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	290	421	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	168	298	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	235	527	1	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	121	294	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114912125	114912125	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	181	379	0	ENST00000543371.1:c.1195T>A	p.Tyr399Asn	p.Y399N	ENST00000543371	NM_001198531.1	399	Tac/Aac																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108151830	108151830	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	135	382	0	ENST00000278616.4:c.3511C>T	p.Gln1171Ter	p.Q1171*	ENST00000278616	NM_000051.3	1171	Cag/Tag																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108205784	108205784	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	94	281	0	ENST00000278616.4:c.8099A>C	p.Lys2700Thr	p.K2700T	ENST00000278616	NM_000051.3	2700	aAa/aCa																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457652	67457653	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACT			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	422	650	0	ENST00000327367.4:c.463_466dup	p.Tyr156Ter	p.Y156*	ENST00000327367	NM_005902.3	154	-/GACT																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99434685	99434685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	426	464	0	ENST00000268035.6:c.772G>A	p.Gly258Ser	p.G258S	ENST00000268035	NM_000875.3	258	Ggt/Agt																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78704418	78704418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	143	367	1	ENST00000306801.3:c.566C>T	p.Pro189Leu	p.P189L	ENST00000306801	NM_020761.2	189	cCg/cTg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174061	112174061	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	148	274	0	ENST00000257430.4:c.2770A>T	p.Arg924Ter	p.R924*	ENST00000257430	NM_000038.5	924	Aga/Tga																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98242827	98242827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014827-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	198	360	0	ENST00000331920.6:c.790T>C	p.Phe264Leu	p.F264L	ENST00000331920	NM_000264.3	264	Ttc/Ctc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	758	302	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48941715	48941716	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0011181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	198	249	0	ENST00000267163.4:c.1027_1028del	p.Leu343SerfsTer3	p.L343Sfs*3	ENST00000267163	NM_000321.2	342	aCT/a																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55970944	55970944	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	337	563	0	ENST00000263923.4:c.1853C>G	p.Ser618Cys	p.S618C	ENST00000263923	NM_002253.2	618	tCt/tGt																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29912163	29912163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	68	101	0	ENST00000376809.5:c.884C>A	p.Thr295Asn	p.T295N	ENST00000376809	NM_002116.7	295	aCc/aAc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509606	106509606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	304	489	0	ENST00000359195.3:c.1600C>A	p.Pro534Thr	p.P534T	ENST00000359195	NM_002649.2	534	Ccc/Acc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139400006	139400006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	907	485	1	ENST00000277541.6:c.4342G>A	p.Ala1448Thr	p.A1448T	ENST00000277541	NM_017617.3	1448	Gcg/Acg																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119167705	119167705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	674	587	0	ENST00000264033.4:c.2114C>G	p.Ser705Cys	p.S705C	ENST00000264033	NM_005188.3	705	tCc/tGc																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50480090	50480090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	215	429	0	ENST00000394963.4:c.324C>G	p.Ile108Met	p.I108M	ENST00000394963	NM_003076.4	108	atC/atG																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45868097	45868097	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1190	231	433	0	ENST00000391945.4:c.593C>T	p.Ser198Leu	p.S198L	ENST00000391945	NM_000400.3	198	tCa/tTa																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162475207	162475208	+	splice_acceptor_variant	Splice_Site	INS	-	-	T			P-0011181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	324	415	0	ENST00000366898.1:c.535-2dup		p.X179_splice	ENST00000366898	NM_004562.2	179																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	327	460	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	274	518	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971069	21971070	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	64	80	0	ENST00000304494.5:c.288dup	p.Leu97AlafsTer23	p.L97Afs*23	ENST00000304494	NM_000077.4	96	-/G																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971069	21971070	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	64	80	0	ENST00000304494.5:c.288dup	p.Leu97AlafsTer23	p.L97Afs*23	ENST00000304494	NM_000077.4	96	-/G																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971069	21971070	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	64	80	0	ENST00000304494.5:c.288dup	p.Leu97AlafsTer23	p.L97Afs*23	ENST00000304494	NM_000077.4	96	-/G																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226567723	226567723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000228-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2317	132	699	1	ENST00000366794.5:c.1443G>T	p.Trp481Cys	p.W481C	ENST00000366794	NM_001618.3	481	tgG/tgT																																												NEWRECORD																																		
FOXL2	0	MSKCC	GRCh37	3	138664911	138664911	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000228-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	41	156	0	ENST00000330315.3:c.654C>G	p.Cys218Trp	p.C218W	ENST00000330315	NM_023067.3	218	tgC/tgG																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31020771	31020771	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000228-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	129	308	0	ENST00000375687.4:c.1068A>T	p.Glu356Asp	p.E356D	ENST00000375687	NM_015338.5	356	gaA/gaT																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	465700	465701	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000228-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1157	115	530	0	ENST00000399788.2:c.675dupA	p.Glu226ArgfsTer7	p.E226Rfs*7	ENST00000399788	NM_001042603.1	225	-/A																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	209	83	2				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27092809	27092809	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	311	296	0	ENST00000324856.7:c.2830C>T	p.Gln944Ter	p.Q944*	ENST00000324856	NM_006015.4	944	Cag/Tag																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93636487	93636487	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	179	367	0	ENST00000375746.1:c.917C>T	p.Ser306Phe	p.S306F	ENST00000375746	NM_001174167.1	306	tCc/tTc																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135787691	135787692	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0003140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	465	297	1	ENST00000298552.3:c.890dup	p.Tyr297Ter	p.Y297*	ENST00000298552	NM_001162426.1	297	tat/taAt																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			777	249	266	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643972	52643972	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	62	149	0	ENST00000394830.3:c.1925-1G>T		p.X642_splice	ENST00000394830	NM_018313.4	642																																													NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89498521	89498521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	88	207	0	ENST00000336596.2:c.2493G>T	p.Gln831His	p.Q831H	ENST00000336596	NM_005233.5	831	caG/caT																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66217279	66217279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	29	204	0	ENST00000273854.3:c.2336G>T	p.Gly779Val	p.G779V	ENST00000273854	NM_004439.5	779	gGc/gTc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542579	187542579	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			764	76	317	0	ENST00000441802.2:c.5161A>C	p.Thr1721Pro	p.T1721P	ENST00000441802	NM_005245.3	1721	Act/Cct																																												NEWRECORD																																		
FGF4	0	MSKCC	GRCh37	11	69588233	69588233	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	686	326	0	ENST00000168712.1:c.465C>A	p.Cys155Ter	p.C155*	ENST00000168712	NM_002007.2	155	tgC/tgA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578242	7578242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	153	326	0	ENST00000269305.4:c.607G>T	p.Val203Leu	p.V203L	ENST00000269305	NM_001126112.2	203	Gtg/Ttg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29560019	29560019	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	132	245	0	ENST00000358273.4:c.3497-1G>T		p.X1166_splice	ENST00000358273	NM_001042492.2	1166																																													NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	129	358	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099447	157099448	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAACAGCAACATCCCATTT			P-0002605-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	18	83	0	ENST00000346085.5:c.386_404dup	p.Asn136ThrfsTer102	p.N136Tfs*102	ENST00000346085	NM_020732.3	128	-/CAACAGCAACATCCCATTT																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27097680	27097680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	174	302	0	ENST00000324856.7:c.3269G>T	p.Ser1090Ile	p.S1090I	ENST00000324856	NM_006015.4	1090	aGc/aTc																																												NEWRECORD																																		
MCL1	0	MSKCC	GRCh37	1	150551862	150551862	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	105	155	0	ENST00000369026.2:c.145G>C	p.Gly49Arg	p.G49R	ENST00000369026	NM_021960.4	49	Ggg/Cgg																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134670358	134670358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	102	278	0	ENST00000398015.3:c.269G>A	p.Arg90His	p.R90H	ENST00000398015	NM_004441.4	90	cGc/cAc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142254044	142254044	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	16	215	0	ENST00000350721.4:c.3823A>G	p.Thr1275Ala	p.T1275A	ENST00000350721	NM_001184.3	1275	Acc/Gcc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55961055	55961055	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	109	360	0	ENST00000263923.4:c.2885G>C	p.Arg962Pro	p.R962P	ENST00000263923	NM_002253.2	962	cGc/cCc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174845	112174845	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	111	296	0	ENST00000257430.4:c.3554C>A	p.Thr1185Lys	p.T1185K	ENST00000257430	NM_000038.5	1185	aCa/aAa																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21970913	21970913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	106	283	0	ENST00000304494.5:c.445G>T	p.Glu149Ter	p.E149*	ENST00000304494	NM_000077.4	149	Gaa/Taa																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970913	21970913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	106	283	0	ENST00000304494.5:c.445G>T	p.Glu149Ter	p.E149*	ENST00000304494	NM_000077.4	149	Gaa/Taa																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209320	98209320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	103	342	0	ENST00000331920.6:c.4218C>A	p.His1406Gln	p.H1406Q	ENST00000331920	NM_000264.3	1406	caC/caA																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98244319	98244319	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	132	263	0	ENST00000331920.6:c.658A>G	p.Ile220Val	p.I220V	ENST00000331920	NM_000264.3	220	Ata/Gta																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32450142	32450142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	88	257	0	ENST00000332351.3:c.670G>T	p.Gly224Trp	p.G224W	ENST00000332351	NM_024426.4	224	Ggg/Tgg																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64138878	64138878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	72	209	2	ENST00000334205.4:c.2245G>A	p.Ala749Thr	p.A749T	ENST00000334205	NM_003942.2	749	Gcc/Acc																																												NEWRECORD																																		
EED	0	MSKCC	GRCh37	11	85966292	85966292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			810	83	367	0	ENST00000263360.6:c.389G>T	p.Gly130Val	p.G130V	ENST00000263360	NM_003797.3	130	gGa/gTa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108153464	108153464	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	162	308	4	ENST00000278616.4:c.3604G>T	p.Gly1202Ter	p.G1202*	ENST00000278616	NM_000051.3	1202	Gga/Tga																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3779644	3779644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	297	226	0	ENST00000262367.5:c.5404G>A	p.Val1802Met	p.V1802M	ENST00000262367	NM_004380.2	1802	Gtg/Atg																																												NEWRECORD																																		
PRKAR1A	0	MSKCC	GRCh37	17	66518916	66518916	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	94	275	0	ENST00000358598.2:c.197A>T	p.Gln66Leu	p.Q66L	ENST00000358598	NM_212471.2	66	cAg/cTg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119932	70119932	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	171	196	0	ENST00000245479.2:c.934C>T	p.Gln312Ter	p.Q312*	ENST00000245479	NM_000346.3	312	Cag/Tag																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31016030	31016030	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	200	306	0	ENST00000375687.4:c.352A>C	p.Thr118Pro	p.T118P	ENST00000375687	NM_015338.5	118	Act/Cct																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252869	36252869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	110	298	0	ENST00000300305.3:c.493G>T	p.Gly165Cys	p.G165C	ENST00000300305		165	Ggt/Tgt																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36259143	36259143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	97	318	0	ENST00000300305.3:c.348C>G	p.Phe116Leu	p.F116L	ENST00000300305		116	ttC/ttG																																												NEWRECORD																																		
CRLF2	0	MSKCC	GRCh37	X	1325400	1325400	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	151	325	0	ENST00000381566.1:c.275A>T	p.Asp92Val	p.D92V	ENST00000381566		92	gAc/gTc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47044557	47044557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	196	325	0	ENST00000329236.7:c.1820G>T	p.Arg607Leu	p.R607L	ENST00000329236	NM_001204466.1	607	cGg/cTg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70352694	70352694	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	71	299	1	ENST00000374080.3:c.4416-1G>T		p.X1472_splice	ENST00000374080		1472																																													NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64138116	64138117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	77	272	0	ENST00000334205.4:c.2040dup	p.Ser681LeufsTer123	p.S681Lfs*123	ENST00000334205	NM_003942.2	680	cgc/cgCc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1219367	1219368	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGACAGCGTGCC			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	92	284	0	ENST00000326873.7:c.423_434dup	p.Asp141_Pro144dup	p.D141_P144dup	ENST00000326873	NM_000455.4	141	ctg/ctGGACAGCGTGCCg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11141498	11141499	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	165	329	0	ENST00000344626.4:c.3475_3476delinsTT	p.Gly1159Leu	p.G1159L	ENST00000344626	NM_003072.3	1159	GGg/TTg																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	175956239	175956240	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	72	216	0	ENST00000367669.3:c.1973-1_1973delinsTT		p.X658_splice	ENST00000367669	NM_022457.5	658																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577498	7577499	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0001782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	123	208	0	ENST00000269305.4:c.782_782+1delinsTT		p.X261_splice	ENST00000269305	NM_001126112.2	261																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	152	332	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	374	491	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39721126	39721126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	74	413	0	ENST00000361337.2:c.629G>A	p.Arg210His	p.R210H	ENST00000361337	NM_003286.2	210	cGc/cAc																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81346659	81346659	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	131	331	0	ENST00000222390.5:c.1294G>T	p.Ala432Ser	p.A432S	ENST00000222390	NM_000601.4	432	Gca/Tca																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508200	106508200	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	125	140	0	ENST00000359195.3:c.194G>C	p.Gly65Ala	p.G65A	ENST00000359195	NM_002649.2	65	gGc/gCc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509240	106509240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	174	509	0	ENST00000359195.3:c.1234G>T	p.Val412Leu	p.V412L	ENST00000359195	NM_002649.2	412	Gtg/Ttg																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123310884	123310884	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs200766273		P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	180	522	1	ENST00000358487.5:c.544G>T	p.Gly182Trp	p.G182W	ENST00000358487	NM_000141.4	182	Ggg/Tgg																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119149219	119149219	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	232	472	1	ENST00000264033.4:c.1228-1G>T		p.X410_splice	ENST00000264033	NM_005188.3	410																																													NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207042	1207042	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	235	391	0	ENST00000326873.7:c.130A>T	p.Lys44Ter	p.K44*	ENST00000326873	NM_000455.4	44	Aag/Tag																																												NEWRECORD																																		
ZRSR2	0	MSKCC	GRCh37	X	15841307	15841307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	379	287	0	ENST00000307771.7:c.1391G>A	p.Arg464His	p.R464H	ENST00000307771	NM_005089.3	464	cGt/cAt																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86658397	86658397	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	88	305	0	ENST00000274376.6:c.1363del	p.Asp455MetfsTer28	p.D455Mfs*28	ENST00000274376	NM_002890.2	454	gtG/gt																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10599938	10599939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	411	558	0	ENST00000171111.5:c.1637dup	p.Val547ArgfsTer27	p.V547Rfs*27	ENST00000171111	NM_203500.1	546	ttc/ttTc																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81334786	81334787	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	59	374	0	ENST00000222390.5:c.1929_1930delinsAA	p.Ser643_Gln644delinsArgLys	p.S643_Q644delinsRK	ENST00000222390	NM_000601.4	643	agCCag/agAAag																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81340796	81340796	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0003056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	81	306	0	ENST00000222390.5:c.1444+1G>A		p.X482_splice	ENST00000222390	NM_000601.4	482																																													NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434958	49434959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	36	104	0	ENST00000301067.7:c.6594dupC	p.Tyr2199LeufsTer3	p.Y2199Lfs*3	ENST00000301067	NM_003482.3	2198	-/C																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			981	194	717	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	21	409	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1301	163	776	1	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc																																												NEWRECORD																																		
MEF2B	0	MSKCC	GRCh37	19	19257366	19257366	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	103	851	0	ENST00000162023.5:c.767delC	p.Pro256GlnfsTer?	p.P256Qfs*?	ENST00000162023		256	cCa/ca																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178258	56178258	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	80	481	1	ENST00000399503.3:c.3236del	p.Asn1079IlefsTer3	p.N1079Ifs*3	ENST00000399503	NM_005921.1	1077	tcA/tc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	83	552	0	ENST00000256078.4:c.99T>G	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaG																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121431395	121431395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	137	655	2	ENST00000257555.6:c.599G>A	p.Arg200Gln	p.R200Q	ENST00000257555		200	cGg/cAg																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95557628	95557628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1029	175	734	0	ENST00000343455.3:c.5439G>T	p.Glu1813Asp	p.E1813D	ENST00000343455	NM_177438.2	1813	gaG/gaT																																												NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1346	183	995	3	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																												NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			886	172	684	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																												NEWRECORD																																		
HIST3H3	0	MSKCC	GRCh37	1	228613016	228613016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	72	288	0	ENST00000366696.1:c.11C>T	p.Thr4Ile	p.T4I	ENST00000366696	NM_003493.2	4	aCc/aTc																																												NEWRECORD																																		
INPPL1	0	MSKCC	GRCh37	11	71948653	71948653	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147991973		P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	204	730	0	ENST00000298229.2:c.3365C>T	p.Ser1122Leu	p.S1122L	ENST00000298229	NM_001567.3	1122	tCg/tTg																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	422242	422248	+	frameshift_variant	Frame_Shift_Del	DEL	CGGTCCA	CGGTCCA	-			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	120	773	0	ENST00000399788.2:c.3010_3016del	p.Trp1004LeufsTer42	p.W1004Lfs*42	ENST00000399788	NM_001042603.1	1004	TGGACCGct/ct																																												NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72821918	72821918	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	120	353	0	ENST00000268489.5:c.10257del	p.Lys3420AsnfsTer65	p.K3420Nfs*65	ENST00000268489	NM_006885.3	3419	ccC/cc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435692	56435692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	51	566	1	ENST00000407977.2:c.1445G>A	p.Cys482Tyr	p.C482Y	ENST00000407977		482	tGc/tAc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5231610	5231611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	29	185	0	ENST00000357368.4:c.1865dup	p.Gln623SerfsTer4	p.Q623Sfs*4	ENST00000357368	NM_002850.3	622	cct/ccCt																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18266981	18266981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	98	358	0	ENST00000222254.8:c.292G>A	p.Ala98Thr	p.A98T	ENST00000222254	NM_005027.3	98	Gcc/Acc																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39725902	39725902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	125	555	0	ENST00000361337.2:c.773C>T	p.Thr258Met	p.T258M	ENST00000361337	NM_003286.2	258	aCg/aTg																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29090060	29090060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	64	234	0	ENST00000328354.6:c.1421G>A	p.Arg474His	p.R474H	ENST00000328354	NM_007194.3	474	cGt/cAt																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41574656	41574656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1219	241	908	0	ENST00000263253.7:c.6941C>G	p.Pro2314Arg	p.P2314R	ENST00000263253	NM_001429.3	2314	cCt/cGt																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89462353	89462353	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1016	72	768	0	ENST00000336596.2:c.1825G>T	p.Val609Phe	p.V609F	ENST00000336596	NM_005233.5	609	Gtt/Ttt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187628614	187628614	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	183	844	0	ENST00000441802.2:c.2368del	p.Leu790Ter	p.L790*	ENST00000441802	NM_005245.3	790	Ctg/tg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589135	67589135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	32	306	0	ENST00000274335.5:c.1127del	p.Gly376GlufsTer5	p.G376Efs*5	ENST00000274335		375	Ggg/gg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67592160	67592160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	83	258	0	ENST00000274335.5:c.1976G>T	p.Cys659Phe	p.C659F	ENST00000274335		659	tGc/tTc																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372092	55372092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	83	712	1	ENST00000297316.4:c.782G>C	p.Gly261Ala	p.G261A	ENST00000297316	NM_022454.3	261	gGc/gCc																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	69030855	69030855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	116	447	0	ENST00000288368.4:c.3397T>C	p.Phe1133Leu	p.F1133L	ENST00000288368	NM_024870.2	1133	Ttc/Ctc																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98270541	98270541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015048-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	86	409	2	ENST00000331920.6:c.103C>T	p.Arg35Trp	p.R35W	ENST00000331920	NM_000264.3	35	Cgg/Tgg																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			552	144	337	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			708	199	494	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			430	121	262	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			524	124	290	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29416139	29416139	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			512	105	345	0	ENST00000389048.3:c.4814A>T	p.Glu1605Val	p.E1605V	ENST00000389048	NM_004304.4	1605	gAg/gTg																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713744	30713744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			336	289	263	2	ENST00000359013.4:c.1144G>T	p.Gly382Trp	p.G382W	ENST00000359013	NM_001024847.2	382	Ggg/Tgg																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64136031	64136031	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			540	183	273	0	ENST00000334205.4:c.1292G>C	p.Arg431Pro	p.R431P	ENST00000334205	NM_003942.2	431	cGc/cCc																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14029218	14029218	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41557814		P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			707	198	530	0	ENST00000311895.7:c.1429C>T	p.Arg477Trp	p.R477W	ENST00000311895	NM_005236.2	477	Cgg/Tgg																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29091862	29091862	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			85	29	73	0	ENST00000328354.6:c.1096-1G>T		p.X366_splice	ENST00000328354	NM_007194.3	366																																													NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410021	63410021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			315	259	306	0	ENST00000330258.3:c.3146G>A	p.Arg1049Gln	p.R1049Q	ENST00000330258	NM_152424.3	1049	cGa/cAa																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411828	63411837	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGATAAGA	CAGGATAAGA	-			P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			342	338	405	0	ENST00000330258.3:c.1330_1339del	p.Ser444AlafsTer2	p.S444Afs*2	ENST00000330258	NM_152424.3	444	TCTTATCCTGgc/gc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11272489	11272489	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			521	122	318	0	ENST00000361445.4:c.3441T>G	p.Asp1147Glu	p.D1147E	ENST00000361445	NM_004958.3	1147	gaT/gaG																																												NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2137925	2137958	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCTGCAGTGCAGGAAAGGTAGGGCCGGGTGGGG	CCCTGCAGTGCAGGAAAGGTAGGGCCGGGTGGGG	-	rs1401175925		P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			769	46	463	0	ENST00000219476.3:c.5068+27_5069-47del		p.X1690_splice	ENST00000219476	NM_000548.3	1690																																													NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120206	70120207	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0004809-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			629	193	351	0	ENST00000245479.2:c.1211_1212dup	p.Ser405ProfsTer66	p.S405Pfs*66	ENST00000245479	NM_000346.3	403	agc/agCCc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591115	67591115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	52	362	1	ENST00000274335.5:c.1708C>T	p.Leu570Phe	p.L570F	ENST00000274335		570	Ctt/Ttt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974696	21974696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	100	358	0	ENST00000304494.5:c.131del	p.Tyr44SerfsTer9	p.Y44Sfs*9	ENST00000304494	NM_000077.4	44	tAc/tc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974696	21974696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	100	358	0	ENST00000304494.5:c.131del	p.Tyr44SerfsTer9	p.Y44Sfs*9	ENST00000304494	NM_000077.4	44	tAc/tc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579471	7579472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0014239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	180	615	1	ENST00000269305.4:c.215_216insTG	p.Val73AlafsTer51	p.V73Afs*51	ENST00000269305	NM_001126112.2	72	ccc/ccTGc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579477	7579477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014239-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	178	626	0	ENST00000269305.4:c.210del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	70	gcT/gc																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	150	414	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0007804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	100	322	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0007804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	260	594	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57754826	57754826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	203	487	0	ENST00000274289.3:c.364C>T	p.His122Tyr	p.H122Y	ENST00000274289	NM_006622.3	122	Cat/Tat																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174484	112174484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	122	469	1	ENST00000257430.4:c.3193C>T	p.Gln1065Ter	p.Q1065*	ENST00000257430	NM_000038.5	1065	Caa/Taa																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32168969	32168969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	522	640	1	ENST00000375023.3:c.4064G>A	p.Arg1355Gln	p.R1355Q	ENST00000375023	NM_004557.3	1355	cGg/cAg																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43600507	43600507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	424	514	0	ENST00000355710.3:c.733G>A	p.Val245Met	p.V245M	ENST00000355710	NM_020975.4	245	Gtg/Atg																																												NEWRECORD																																		
EIF1AX	0	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	366	290	0	ENST00000379607.5:c.38G>A	p.Arg13His	p.R13H	ENST00000379607	NM_001412.3	13	cGc/cAc																																												NEWRECORD																																		
TRAF2	0	MSKCC	GRCh37	9	139804423	139804425	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0007804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1113	476	663	0	ENST00000247668.2:c.587_589del	p.Lys196del	p.K196del	ENST00000247668	NM_021138.3	194	AAG/-																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119765	70119766	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0007804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	394	468	1	ENST00000245479.2:c.770_771dupGC	p.Pro258AlafsTer22	p.P258Afs*22	ENST00000245479	NM_000346.3	256	ggg/ggGCg																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	158	367	1	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt																																												NEWRECORD																																		
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	208	469	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11097199	11097200	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCCT			P-0005470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	48	314	0	ENST00000344626.4:c.708_713dup	p.Gly243_Pro244dup	p.G243_P244dup	ENST00000344626	NM_003072.3	243	-/GGCCCT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	197	310	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	46	327	1	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0005876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	227	455	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	66	81	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	66	81	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	162	231	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0005876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	442	320	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248599	212248599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	255	349	0	ENST00000342788.4:c.3668A>G	p.Lys1223Arg	p.K1223R	ENST00000342788	NM_005235.2	1223	aAg/aGg																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45368252	45368252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	380	348	0	ENST00000262160.6:c.1350C>G	p.Asp450Glu	p.D450E	ENST00000262160	NM_005901.5	450	gaC/gaG																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123217364	123217364	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	273	382	0	ENST00000218089.9:c.3018T>G	p.Phe1006Leu	p.F1006L	ENST00000218089	NM_001042749.1	1006	ttT/ttG																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47035925	47035926	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0005876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	388	348	0	ENST00000329236.7:c.375_376dup	p.Ser126CysfsTer64	p.S126Cfs*64	ENST00000329236	NM_001204466.1	124	-/GT																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971147	21971148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	40	44	0	ENST00000304494.5:c.210dup	p.Asn71GlnfsTer49	p.N71Qfs*49	ENST00000304494	NM_000077.4	70	-/C																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971147	21971148	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	40	44	0	ENST00000304494.5:c.210dup	p.Asn71GlnfsTer49	p.N71Qfs*49	ENST00000304494	NM_000077.4	70	-/C																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	123	335	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18278049	18278049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	78	373	0	ENST00000222254.8:c.1669G>A	p.Asp557Asn	p.D557N	ENST00000222254	NM_005027.3	557	Gac/Aac																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115914	8115915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	96	226	0	ENST00000346208.3:c.1262dup	p.Met422AspfsTer85	p.M422Dfs*85	ENST00000346208		420	-/C																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14024721	14024721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	346	250	0	ENST00000311895.7:c.947C>T	p.Thr316Met	p.T316M	ENST00000311895	NM_005236.2	316	aCg/aTg																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	140	169	0	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	721	208	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	465598	465598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	510	366	1	ENST00000399788.2:c.778G>T	p.Asp260Tyr	p.D260Y	ENST00000399788	NM_001042603.1	260	Gat/Tat																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28626706	28626706	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	445	314	0	ENST00000241453.7:c.590T>C	p.Val197Ala	p.V197A	ENST00000241453	NM_004119.2	197	gTg/gCg																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220439700	220439701	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	721	551	0	ENST00000243786.2:c.562_563dupCT	p.Leu189CysfsTer2	p.L189Cfs*2	ENST00000243786	NM_002191.3	185	gct/gCTct																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16264391	16264391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145335938		P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	530	449	1	ENST00000375759.3:c.10594G>A	p.Val3532Ile	p.V3532I	ENST00000375759	NM_015001.2	3532	Gtc/Atc																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206667296	206667296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	489	341	0	ENST00000367120.3:c.2089C>A	p.Leu697Ile	p.L697I	ENST00000367120	NM_014002.3	697	Ctc/Atc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189586482	189586482	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	289	171	0	ENST00000264731.3:c.1106A>G	p.Lys369Arg	p.K369R	ENST00000264731	NM_003722.4	369	aAg/aGg																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112029147	112029147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	756	552	4	ENST00000368678.4:c.421G>A	p.Val141Ile	p.V141I	ENST00000368678		141	Gtt/Att																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98244441	98244441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	369	273	0	ENST00000331920.6:c.629T>C	p.Ile210Thr	p.I210T	ENST00000331920	NM_000264.3	210	aTc/aCc																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249363	110249363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	795	612	0	ENST00000374672.4:c.1210G>A	p.Gly404Ser	p.G404S	ENST00000374672	NM_004235.4	404	Ggc/Agc																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64572613	64572613	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	493	381	1	ENST00000337652.1:c.1258C>T	p.Arg420Ter	p.R420*	ENST00000337652	NM_130803.2	420	Cga/Tga																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49415591	49415591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	470	292	0	ENST00000301067.7:c.16586C>T	p.Ala5529Val	p.A5529V	ENST00000301067	NM_003482.3	5529	gCc/gTc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32900724	32900724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	516	389	0	ENST00000380152.3:c.605C>T	p.Pro202Leu	p.P202L	ENST00000380152		202	cCc/cTc																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	175957464	175957465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	538	376	0	ENST00000367669.3:c.1931dup	p.Asn644LysfsTer17	p.N644Kfs*17	ENST00000367669	NM_022457.5	644	aac/aaAc																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69233089	69233090	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	388	270	0	ENST00000462284.1:c.961dupC	p.Leu321ProfsTer13	p.L321Pfs*13	ENST00000462284	NM_002392.5	318	-/C																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821360	72821360	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	424	451	0	ENST00000268489.5:c.10815del	p.Ser3606ProfsTer88	p.S3606Pfs*88	ENST00000268489	NM_006885.3	3605	ccC/cc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89348560	89348561	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0011155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1625	632	795	1	ENST00000301030.4:c.4389_4390del	p.Lys1464ThrfsTer89	p.K1464Tfs*89	ENST00000301030	NM_001256183.1	1463	gaGAaa/gaaa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003009-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	99	453	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003009-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	162	323	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	70014202	70014202	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003009-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			536	181	562	0	ENST00000352241.4:c.1366G>T	p.Gly456Ter	p.G456*	ENST00000352241	NM_198159.2	456	Gga/Tga																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143029327	143029327	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003009-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			624	184	358	0	ENST00000262992.4:c.2293T>A	p.Leu765Met	p.L765M	ENST00000262992	NM_001101669.1	765	Ttg/Atg																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43615013	43615013	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003009-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	98	389	0	ENST00000355710.3:c.2427C>A	p.Tyr809Ter	p.Y809*	ENST00000355710	NM_020975.4	809	taC/taA																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70357483	70357483	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003009-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	174	491	0	ENST00000374080.3:c.5824C>A	p.Gln1942Lys	p.Q1942K	ENST00000374080		1942	Cag/Aag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023987	27023987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003009-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			39	30	12	0	ENST00000324856.7:c.1095del	p.Ser366AlafsTer25	p.S366Afs*25	ENST00000324856	NM_006015.4	365	Ggg/gg																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176710802	176710803	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0003009-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	333	474	0	ENST00000439151.2:c.6025_6026dup	p.Gly2010LeufsTer11	p.G2010Lfs*11	ENST00000439151	NM_022455.4	2008	-/GC																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398262	25398262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	350	354	0	ENST00000256078.4:c.57G>C	p.Leu19Phe	p.L19F	ENST00000256078	NM_033360.2	19	ttG/ttC																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32168695	32168695	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143103753		P-0006838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1189	77	510	1	ENST00000375023.3:c.4228C>T	p.Arg1410Cys	p.R1410C	ENST00000375023	NM_004557.3	1410	Cgc/Tgc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	438	346	3	ENST00000380152.3:c.1813delA	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1295444	1295444	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0006838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	11	11	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88677032	88677032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	196	141	0	ENST00000372037.3:c.817C>T	p.Arg273Ter	p.R273*	ENST00000372037	NM_004329.2	273	Cga/Tga																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89685269	89685269	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	284	166	0	ENST00000371953.3:c.165-1G>T		p.X55_splice	ENST00000371953	NM_000314.4	55																																													NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64572152	64572152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	128	299	0	ENST00000337652.1:c.1502A>G	p.Lys501Arg	p.K501R	ENST00000337652	NM_130803.2	501	aAg/aGg																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31022638	31022638	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	64	457	0	ENST00000375687.4:c.2123A>G	p.Gln708Arg	p.Q708R	ENST00000375687	NM_015338.5	708	cAg/cGg																																												NEWRECORD																																		
BCL10	8915	MSKCC	GRCh37	1	85736510	85736511	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs387906351		P-0006838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	589	584	4	ENST00000370580.1:c.136dup	p.Ile46AsnfsTer4	p.I46Nfs*4	ENST00000370580	NM_003921.4	46	ata/aAta																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842331	68842331	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	220	354	0	ENST00000261769.5:c.393delC	p.Val132PhefsTer83	p.V132Ffs*83	ENST00000261769	NM_004360.3	131	tCc/tc																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2121529	2121573	+	inframe_deletion	In_Frame_Del	DEL	CTGCTGCGGGCCGACTCACTGCACCGCCTGGGCCTGCCCAACAAG	CTGCTGCGGGCCGACTCACTGCACCGCCTGGGCCTGCCCAACAAG	-			P-0006838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	96	349	0	ENST00000219476.3:c.1858_1902delCTGCTGCGGGCCGACTCACTGCACCGCCTGGGCCTGCCCAACAAG	p.Leu620_Lys634del	p.L620_K634del	ENST00000219476	NM_000548.3	620	CTGCTGCGGGCCGACTCACTGCACCGCCTGGGCCTGCCCAACAAG/-																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5069101	5069122	+	frameshift_variant	Frame_Shift_Del	DEL	AGAACTTCAGCAGTCTTAAAGA	AGAACTTCAGCAGTCTTAAAGA	-			P-0006838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	42	462	0	ENST00000381652.3:c.1406_1427delAGAACTTCAGCAGTCTTAAAGA	p.Lys469IlefsTer3	p.K469Ifs*3	ENST00000381652	NM_004972.3	469	aAGAACTTCAGCAGTCTTAAAGAt/at																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	215	270	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467570	66467570	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			797	137	335	0	ENST00000273854.3:c.699C>A	p.Cys233Ter	p.C233*	ENST00000273854	NM_004439.5	233	tgC/tgA																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112154696	112154696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	99	286	0	ENST00000257430.4:c.967G>T	p.Gly323Cys	p.G323C	ENST00000257430	NM_000038.5	323	Ggt/Tgt																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610136	10610136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			658	348	392	0	ENST00000171111.5:c.574G>A	p.Glu192Lys	p.E192K	ENST00000171111	NM_203500.1	192	Gag/Aag																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610217	10610217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	362	417	0	ENST00000171111.5:c.493G>A	p.Asp165Asn	p.D165N	ENST00000171111	NM_203500.1	165	Gac/Aac																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52661309	52661310	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTATCAGT			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			854	252	472	0	ENST00000394830.3:c.1520_1521insACTGATAC	p.Gly508LeufsTer14	p.G508Lfs*14	ENST00000394830	NM_018313.4	507	act/acACTGATACt																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119148541	119148546	+	inframe_deletion	In_Frame_Del	DEL	TCAAAG	TCAAAG	-			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			652	324	443	0	ENST00000264033.4:c.1083_1088del	p.Ile361_Val363delinsMet	p.I361_V363delinsM	ENST00000264033	NM_005188.3	361	aTCAAAGtg/atg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1218422	1218456	+	frameshift_variant	Frame_Shift_Del	DEL	TCAACTACTGAGGAGGTTACGGCACAAAAATGTCA	TCAACTACTGAGGAGGTTACGGCACAAAAATGTCA	-			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			568	49	355	0	ENST00000326873.7:c.299_333del	p.Gln100ProfsTer51	p.Q100Pfs*51	ENST00000326873	NM_000455.4	99	atTCAACTACTGAGGAGGTTACGGCACAAAAATGTCAtc/attc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11097133	11097134	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001130-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	261	343	0	ENST00000344626.4:c.626dup	p.Met210AspfsTer77	p.M210Dfs*77	ENST00000344626	NM_003072.3	208	-/C																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	354	254	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206651096	206651096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1451	182	513	0	ENST00000367120.3:c.706C>T	p.Arg236Trp	p.R236W	ENST00000367120	NM_014002.3	236	Cgg/Tgg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68847303	68847304	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	442	614	0	ENST00000261769.5:c.1228dup	p.Glu410GlyfsTer9	p.E410Gfs*9	ENST00000261769	NM_004360.3	409	tgg/tGgg																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49934220	49934221	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0007902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	279	867	0	ENST00000296474.3:c.2286_2287delinsTT	p.Trp762_Thr763delinsCysSer	p.W762_T763delinsCS	ENST00000296474	NM_002447.2	762	tgGAcc/tgTTcc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	150	529	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	13	842	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	62	285	3	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	92	415	1	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156845371	156845371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	45	648	0	ENST00000524377.1:c.1414G>T	p.Gly472Cys	p.G472C	ENST00000524377	NM_002529.3	472	Ggt/Tgt																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	70014356	70014356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	38	739	0	ENST00000352241.4:c.1520G>A	p.Arg507Gln	p.R507Q	ENST00000352241	NM_198159.2	507	cGg/cAg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66361213	66361213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	55	366	1	ENST00000273854.3:c.959G>A	p.Gly320Asp	p.G320D	ENST00000273854	NM_004439.5	320	gGc/gAc																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38962670	38962670	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	11	325	0	ENST00000357387.3:c.1585T>A	p.Leu529Ile	p.L529I	ENST00000357387	NM_152756.3	529	Tta/Ata																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099109	157099109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	10	121	0	ENST00000346085.5:c.46G>A	p.Ala16Thr	p.A16T	ENST00000346085	NM_020732.3	16	Gcc/Acc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5229612	5229612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			8	64	49	0	ENST00000357368.4:c.2239G>A	p.Gly747Ser	p.G747S	ENST00000357368	NM_002850.3	747	Ggc/Agc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116339352	116339353	+	inframe_insertion	In_Frame_Ins	INS	-	-	TTTTAA			P-0011288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	43	376	0	ENST00000397752.3:c.215_220dup	p.Leu73_Asn74insIleLeu	p.L73_N74insIL	ENST00000397752	NM_000245.2	72	gtt/gTTTTAAtt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	178	216	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	279	420	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	219	396	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134851684	134851684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	109	352	0	ENST00000398015.3:c.1090C>T	p.Arg364Trp	p.R364W	ENST00000398015	NM_004441.4	364	Cgg/Tgg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187629336	187629336	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	272	449	0	ENST00000441802.2:c.1646G>T	p.Arg549Leu	p.R549L	ENST00000441802	NM_005245.3	549	cGg/cTg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175630	112175631	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	127	521	0	ENST00000257430.4:c.4342dup	p.Thr1448AsnfsTer7	p.T1448Nfs*7	ENST00000257430	NM_000038.5	1447	caa/cAaa																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411615	63411615	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	255	322	0	ENST00000330258.3:c.1552del	p.Ser518LeufsTer23	p.S518Lfs*23	ENST00000330258	NM_152424.3	518	Tct/ct																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47139504	47139505	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0003895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	125	641	0	ENST00000409792.3:c.5082_5083del	p.Arg1694SerfsTer17	p.R1694Sfs*17	ENST00000409792	NM_014159.6	1694	agAGtc/agtc																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266139	41266140	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	117	430	1	ENST00000349496.5:c.137dup	p.Ser47GlufsTer3	p.S47Efs*3	ENST00000349496	NM_001904.3	46	ctg/cTtg																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52441424	52441443	+	frameshift_variant	Frame_Shift_Del	DEL	CTATTATGGGCCTTGGCCAA	CTATTATGGGCCTTGGCCAA	-			P-0003895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	141	516	0	ENST00000460680.1:c.409_428del	p.Leu137ProfsTer11	p.L137Pfs*11	ENST00000460680	NM_004656.3	137	TTGGCCAAGGCCCATAATAGc/c																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	161	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244361	46244361	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	80	426	0	ENST00000334344.6:c.2455C>T	p.Gln819Ter	p.Q819*	ENST00000334344	NM_152641.2	819	Caa/Taa																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190742103	190742103	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	90	375	1	ENST00000441310.2:c.2740G>T	p.Glu914Ter	p.E914*	ENST00000441310	NM_000534.4	914	Gag/Tag																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151841892	151841892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	90	488	0	ENST00000262189.6:c.14249A>G	p.Tyr4750Cys	p.Y4750C	ENST00000262189	NM_170606.2	4750	tAt/tGt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8317907	8317907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	107	497	1	ENST00000356435.5:c.5706G>T	p.Glu1902Asp	p.E1902D	ENST00000356435		1902	gaG/gaT																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602328	10602328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	80	557	0	ENST00000171111.5:c.1250G>T	p.Gly417Val	p.G417V	ENST00000171111	NM_203500.1	417	gGg/gTg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11132542	11132542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	38	563	0	ENST00000344626.4:c.2758G>A	p.Glu920Lys	p.E920K	ENST00000344626	NM_003072.3	920	Gag/Aag																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17949183	17949183	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	86	574	0	ENST00000458235.1:c.1458C>G	p.Ile486Met	p.I486M	ENST00000458235	NM_000215.3	486	atC/atG																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41419835	41419835	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	43	414	0	ENST00000373198.4:c.486G>T	p.Gln162His	p.Q162H	ENST00000373198	NM_133170.3	162	caG/caT																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47041007	47041007	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	80	308	0	ENST00000329236.7:c.1303G>T	p.Glu435Ter	p.E435*	ENST00000329236	NM_001204466.1	435	Gag/Tag																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207042	1207057	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCTCATCGGCAAGT	AAGCTCATCGGCAAGT	-			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	62	476	0	ENST00000326873.7:c.131_146del	p.Lys44ThrfsTer2	p.K44Tfs*2	ENST00000326873	NM_000455.4	44	AAGCTCATCGGCAAGTac/ac																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137528122	137528123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	77	428	0	ENST00000367739.4:c.177dup	p.Thr60TyrfsTer10	p.T60Yfs*10	ENST00000367739	NM_000416.2	59	-/T																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153244268	153244271	+	frameshift_variant	Frame_Shift_Del	DEL	AAAC	AAAC	-			P-0004875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	50	305	0	ENST00000281708.4:c.1886_1889del	p.Cys629TyrfsTer8	p.C629Yfs*8	ENST00000281708	NM_033632.3	629	tGTTTa/ta																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			115	190	184	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			169	143	155	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29576024	29576024	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			341	217	327	0	ENST00000358273.4:c.3997G>T	p.Glu1333Ter	p.E1333*	ENST00000358273	NM_001042492.2	1333	Gag/Tag																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9784136	9784136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			252	172	245	0	ENST00000377346.4:c.2704C>T	p.Arg902Ter	p.R902*	ENST00000377346	NM_005026.3	902	Cga/Tga																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71026811	71026811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			276	179	317	0	ENST00000318789.4:c.1411G>A	p.Ala471Thr	p.A471T	ENST00000318789	NM_032682.5	471	Gca/Aca																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142274718	142274718	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			299	69	191	0	ENST00000350721.4:c.2341+1G>C		p.X781_splice	ENST00000350721	NM_001184.3	781																																													NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67588942	67588942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			208	104	242	0	ENST00000274335.5:c.1033G>A	p.Glu345Lys	p.E345K	ENST00000274335		345	Gaa/Aaa																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149514547	149514547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			332	158	305	0	ENST00000261799.4:c.397G>A	p.Glu133Lys	p.E133K	ENST00000261799	NM_002609.3	133	Gag/Aag																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874836	151874836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			393	56	311	0	ENST00000262189.6:c.7702G>A	p.Gly2568Arg	p.G2568R	ENST00000262189	NM_170606.2	2568	Gga/Aga																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139390918	139390918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			121	436	277	1	ENST00000277541.6:c.7273G>A	p.Ala2425Thr	p.A2425T	ENST00000277541	NM_017617.3	2425	Gcc/Acc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29683977	29683977	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			318	153	318	0	ENST00000358273.4:c.7739-1G>A		p.X2580_splice	ENST00000358273	NM_001042492.2	2580																																													NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29683985	29683985	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			331	164	355	0	ENST00000358273.4:c.7746G>C	p.Gln2582His	p.Q2582H	ENST00000358273	NM_001042492.2	2582	caG/caC																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37687232	37687232	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			426	231	291	0	ENST00000447079.4:c.4136C>G	p.Ser1379Cys	p.S1379C	ENST00000447079	NM_015083.1	1379	tCt/tGt																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50919914	50919914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			507	179	432	0	ENST00000440232.2:c.3001G>A	p.Gly1001Ser	p.G1001S	ENST00000440232	NM_002691.3	1001	Ggc/Agc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045541	47045541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			51	399	173	0	ENST00000329236.7:c.2274G>T	p.Arg758Ser	p.R758S	ENST00000329236	NM_001204466.1	758	agG/agT																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652089	36652090	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			557	315	310	0	ENST00000244741.5:c.213dup	p.Gly72TrpfsTer17	p.G72Wfs*17	ENST00000244741	NM_000389.4	71	ctt/cTtt																																												NEWRECORD																																		
MAPK1	0	MSKCC	GRCh37	22	22162010	22162011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			483	66	374	0	ENST00000215832.6:c.243_244dup	p.Asn82ArgfsTer18	p.N82Rfs*18	ENST00000215832	NM_002745.4	82	aac/aGAac																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36651893	36651894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0002748-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			439	322	236	0	ENST00000244741.5:c.18_19dup	p.Asp7GlyfsTer25	p.D7Gfs*25	ENST00000244741	NM_000389.4	5	-/GG																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	286	607	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29754956	29754956	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	64	317	0	ENST00000389048.3:c.979G>C	p.Ala327Pro	p.A327P	ENST00000389048	NM_004304.4	327	Gct/Cct																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2983994	2983994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	449	788	0	ENST00000396946.4:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000396946	NM_032415.4	179	cGg/cAg																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50467828	50467828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	253	367	0	ENST00000331340.3:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000331340	NM_006060.4	355	Gcg/Acg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108164101	108164101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	250	450	0	ENST00000278616.4:c.4673C>A	p.Thr1558Lys	p.T1558K	ENST00000278616	NM_000051.3	1558	aCg/aAg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398260	25398260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	330	587	0	ENST00000256078.4:c.59C>T	p.Thr20Met	p.T20M	ENST00000256078	NM_033360.2	20	aCg/aTg																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95590593	95590593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	353	753	0	ENST00000343455.3:c.1316C>T	p.Thr439Ile	p.T439I	ENST00000343455	NM_177438.2	439	aCc/aTc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89348684	89348684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	262	1131	0	ENST00000301030.4:c.4266G>T	p.Leu1422Phe	p.L1422F	ENST00000301030	NM_001256183.1	1422	ttG/ttT																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12016584	12016584	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	120	545	0	ENST00000353533.5:c.720T>A	p.Ser240Arg	p.S240R	ENST00000353533	NM_003010.3	240	agT/agA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578467	7578468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	223	405	0	ENST00000269305.4:c.462dup	p.Thr155HisfsTer26	p.T155Hfs*26	ENST00000269305	NM_001126112.2	154	-/C																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	183	256	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48937001	48937001	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	208	308	0	ENST00000267163.4:c.769C>T	p.Gln257Ter	p.Q257*	ENST00000267163	NM_000321.2	257	Cag/Tag																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198267481	198267481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	172	230	0	ENST00000335508.6:c.1876A>G	p.Asn626Asp	p.N626D	ENST00000335508	NM_012433.2	626	Aac/Gac																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591105	67591106	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	123	189	0	ENST00000274335.5:c.1701dup	p.Pro568ThrfsTer34	p.P568Tfs*34	ENST00000274335		566	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002770-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	43	368	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0002770-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	41	260	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29486094	29486095	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002770-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	56	233	0	ENST00000358273.4:c.276dup	p.Cys93MetfsTer14	p.C93Mfs*14	ENST00000358273	NM_001042492.2	91	gaa/gAaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0002710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	23	379	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0002710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	23	402	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135771932	135771932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	46	403	1	ENST00000298552.3:c.3185G>A	p.Arg1062Gln	p.R1062Q	ENST00000298552	NM_001162426.1	1062	cGg/cAg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151878530	151878530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	59	433	0	ENST00000262189.6:c.6415C>T	p.Arg2139Ter	p.R2139*	ENST00000262189	NM_170606.2	2139	Cga/Tga																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971065	21971065	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	23	367	0	ENST00000304494.5:c.293A>C	p.His98Pro	p.H98P	ENST00000304494	NM_000077.4	98	cAc/cCc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971065	21971065	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	23	367	0	ENST00000304494.5:c.293A>C	p.His98Pro	p.H98P	ENST00000304494	NM_000077.4	98	cAc/cCc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15292560	15292560	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	30	542	0	ENST00000263388.2:c.2619C>A	p.Cys873Ter	p.C873*	ENST00000263388	NM_000435.2	873	tgC/tgA																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045718	47045718	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			51	37	317	0	ENST00000329236.7:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000329236	NM_001204466.1	789	Cag/Tag																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12032536	12032537	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002710-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			75	24	417	0	ENST00000353533.5:c.974dup	p.Pro326SerfsTer5	p.P326Sfs*5	ENST00000353533	NM_003010.3	324	-/C																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000356-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			616	233	366	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0000356-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	263	354	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47684731	47684731	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000356-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	195	370	0	ENST00000347630.2:c.718C>T	p.Arg240Ter	p.R240*	ENST00000347630	NM_001007230.1	240	Cga/Tga																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12016579	12016580	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000356-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	259	434	0	ENST00000353533.5:c.716dupG	p.Ser240LysfsTer5	p.S240Kfs*5	ENST00000353533	NM_003010.3	239	aga/aGga																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	137	348	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	178	311	4	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	287	266	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	201	294	2	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																												NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	333	335	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																												NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	228	396	5	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	273	508	0	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	123	298	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187532678	187532678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	248	511	0	ENST00000441802.2:c.9715G>A	p.Val3239Met	p.V3239M	ENST00000441802	NM_005245.3	3239	Gtg/Atg																																												NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	262	376	1	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	174	347	1	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																												NEWRECORD																																		
SRC	0	MSKCC	GRCh37	20	36028680	36028680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	198	403	0	ENST00000358208.4:c.1022C>T	p.Thr341Met	p.T341M	ENST00000358208		341	aCg/aTg																																												NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	339	582	1	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1272311	1272311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141425941		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	220	407	3	ENST00000310581.5:c.2371G>A	p.Val791Ile	p.V791I	ENST00000310581	NM_198253.2	791	Gtc/Atc																																												NEWRECORD																																		
MET	4233	MSKCC	GRCh37	7	116340097	116340097	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35776110		P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	142	273	0	ENST00000397752.3:c.959C>T	p.Ala320Val	p.A320V	ENST00000397752	NM_000245.2	320	gCg/gTg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151864451	151864451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	118	276	0	ENST00000262189.6:c.9530G>A	p.Arg3177His	p.R3177H	ENST00000262189	NM_170606.2	3177	cGt/cAt																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41727943	41727943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	257	360	0	ENST00000301178.4:c.568C>T	p.Arg190Cys	p.R190C	ENST00000301178	NM_021913.4	190	Cgc/Tgc																																												NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	329	523	2	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120460319	120460319	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	241	426	4	ENST00000256646.2:c.5996del	p.Asn1999MetfsTer32	p.N1999Mfs*32	ENST00000256646	NM_024408.3	1999	aAt/at																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10250425	10250425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	218	417	1	ENST00000340748.4:c.3827G>A	p.Arg1276His	p.R1276H	ENST00000340748		1276	cGc/cAc																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206652329	206652330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	51	464	1	ENST00000367120.3:c.1042dup	p.Arg348ProfsTer8	p.R348Pfs*8	ENST00000367120	NM_014002.3	346	gcc/gCcc																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9520141	9520141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	203	422	0	ENST00000353224.5:c.2128G>A	p.Val710Ile	p.V710I	ENST00000353224	NM_177990.2	710	Gtc/Atc																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46739880	46739880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	282	500	0	ENST00000371975.4:c.1681A>G	p.Ser561Gly	p.S561G	ENST00000371975	NM_003579.3	561	Agt/Ggt																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59247883	59247883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	415	540	0	ENST00000371222.2:c.860T>C	p.Leu287Ser	p.L287S	ENST00000371222	NM_002228.3	287	tTg/tCg																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128015225	128015225	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	69	418	0	ENST00000285398.2:c.2296A>G	p.Ser766Gly	p.S766G	ENST00000285398	NM_000122.1	766	Agc/Ggc																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149593	202149593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	441	390	0	ENST00000358485.4:c.1034A>G	p.Asp345Gly	p.D345G	ENST00000358485	NM_001080125.1	345	gAc/gGc																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72893525	72893525	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	195	461	0	ENST00000325599.8:c.193T>C	p.Tyr65His	p.Y65H	ENST00000325599	NM_018130.2	65	Tat/Cat																																												NEWRECORD																																		
FOXL2	0	MSKCC	GRCh37	3	138664475	138664475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	147	213	1	ENST00000330315.3:c.1090G>A	p.Asp364Asn	p.D364N	ENST00000330315	NM_023067.3	364	Gac/Aac																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153250896	153250896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	197	373	1	ENST00000281708.4:c.1164G>T	p.Gln388His	p.Q388H	ENST00000281708	NM_033632.3	388	caG/caT																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1295329	1295329	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	166	270	1				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176722324	176722324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	41	381	0	ENST00000439151.2:c.7955C>T	p.Ala2652Val	p.A2652V	ENST00000439151	NM_022455.4	2652	gCt/gTt																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36651985	36651985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	215	364	0	ENST00000244741.5:c.107C>T	p.Ala36Val	p.A36V	ENST00000244741	NM_000389.4	36	gCg/gTg																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93969151	93969151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	282	564	1	ENST00000369303.4:c.1845G>T	p.Glu615Asp	p.E615D	ENST00000369303	NM_004440.3	615	gaG/gaT																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93982054	93982054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	271	541	0	ENST00000369303.4:c.1411G>A	p.Gly471Arg	p.G471R	ENST00000369303	NM_004440.3	471	Gga/Aga																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41739671	41739671	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	305	583	0	ENST00000242208.4:c.302T>C	p.Val101Ala	p.V101A	ENST00000242208	NM_002192.2	101	gTg/gCg																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106513305	106513305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	167	368	0	ENST00000359195.3:c.2209C>A	p.Gln737Lys	p.Q737K	ENST00000359195	NM_002649.2	737	Caa/Aaa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152055719	152055719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	296	591	2	ENST00000262189.6:c.203G>T	p.Ser68Ile	p.S68I	ENST00000262189	NM_170606.2	68	aGc/aTc																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98215773	98215773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	214	358	1	ENST00000331920.6:c.3436G>A	p.Asp1146Asn	p.D1146N	ENST00000331920	NM_000264.3	1146	Gac/Aac																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139402723	139402723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	42	347	0	ENST00000277541.6:c.3286G>A	p.Val1096Met	p.V1096M	ENST00000277541	NM_017617.3	1096	Gtg/Atg																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741604	17741604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	85	119	0	ENST00000250003.3:c.275G>A	p.Arg92His	p.R92H	ENST00000250003	NM_002478.4	92	cGc/cAc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108188247	108188247	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	131	260	0	ENST00000278616.4:c.6346A>C	p.Ser2116Arg	p.S2116R	ENST00000278616	NM_000051.3	2116	Agc/Cgc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431760	49431760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	44	341	0	ENST00000301067.7:c.9379C>T	p.Arg3127Cys	p.R3127C	ENST00000301067	NM_003482.3	3127	Cgc/Tgc																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2138499	2138499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	321	533	0	ENST00000219476.3:c.5312C>T	p.Pro1771Leu	p.P1771L	ENST00000219476	NM_000548.3	1771	cCg/cTg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81960687	81960687	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	262	489	0	ENST00000359376.3:c.2418G>A	p.Trp806Ter	p.W806*	ENST00000359376	NM_002661.3	806	tgG/tgA																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89350353	89350353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1237	111	612	0	ENST00000301030.4:c.2597G>T	p.Arg866Met	p.R866M	ENST00000301030	NM_001256183.1	866	aGg/aTg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15295797	15295797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	295	432	1	ENST00000263388.2:c.2330C>T	p.Pro777Leu	p.P777L	ENST00000263388	NM_000435.2	777	cCg/cTg																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45872384	45872384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	216	368	0	ENST00000391945.4:c.127C>T	p.Pro43Ser	p.P43S	ENST00000391945	NM_000400.3	43	Ccc/Tcc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937521	76937521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	30	400	0	ENST00000373344.5:c.3227C>A	p.Ser1076Tyr	p.S1076Y	ENST00000373344	NM_000489.3	1076	tCt/tAt																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133225574	133225574	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	225	464	0	ENST00000320574.5:c.4090del	p.Arg1364ValfsTer5	p.R1364Vfs*5	ENST00000320574	NM_006231.2	1364	Cgt/gt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49433960	49433960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	43	315	0	ENST00000301067.7:c.7593del	p.Ser2532LeufsTer11	p.S2532Lfs*11	ENST00000301067	NM_003482.3	2531	ccC/cc																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90967511	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	202	326	0	ENST00000265433.3:c.1396dup	p.Arg466LysfsTer5	p.R466Kfs*5	ENST00000265433	NM_002485.4	466	agg/aAgg																																												NEWRECORD																																		
ZRSR2	8233	MSKCC	GRCh37	X	15821896	15821896	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1195	65	608	0	ENST00000307771.7:c.294del	p.Lys98AsnfsTer10	p.K98Nfs*10	ENST00000307771	NM_005089.3	97	Aaa/aa																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119070	70119071	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	G			P-0013357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	95	221	0	ENST00000245479.2:c.642_643delinsG	p.Ser215ProfsTer4	p.S215Pfs*4	ENST00000245479	NM_000346.3	214	tcCTcc/tcGcc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52442545	52442545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	314	297	0	ENST00000460680.1:c.200A>G	p.Asp67Gly	p.D67G	ENST00000460680	NM_004656.3	67	gAt/gGt																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729399	41729399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	303	664	1	ENST00000242208.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000242208	NM_002192.2	377	cGc/cAc																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28589335	28589336	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	65	402	0	ENST00000241453.7:c.2711dup	p.Asn904LysfsTer4	p.N904Kfs*4	ENST00000241453	NM_004119.2	904	aat/aaAt																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47163986	47163992	+	frameshift_variant	Frame_Shift_Del	DEL	ATGCTTT	ATGCTTT	-			P-0009290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	370	330	0	ENST00000409792.3:c.2134_2140del	p.Lys712AlafsTer53	p.K712Afs*53	ENST00000409792	NM_014159.6	712	AAAGCATgc/gc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52713707	52713709	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0009290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	36	302	0	ENST00000394830.3:c.19_21del	p.Arg7del	p.R7del	ENST00000394830	NM_018313.4	7	AGA/-																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44922988	44922989	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	393	277	0	ENST00000377967.4:c.1850dup	p.Pro618ThrfsTer3	p.P618Tfs*3	ENST00000377967	NM_021140.2	617	cta/cTta																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3900610	3900616	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCAGC	CGCCAGC	-			P-0009290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	253	344	0	ENST00000262367.5:c.480_486del	p.Thr163AlafsTer13	p.T163Afs*13	ENST00000262367	NM_004380.2	160	ggGCTGGCG/gg																																												NEWRECORD																																		
CALR	0	MSKCC	GRCh37	19	13050398	13050398	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	181	691	0	ENST00000316448.5:c.350T>C	p.Leu117Ser	p.L117S	ENST00000316448	NM_004343.3	117	tTg/tCg																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9624879	9624879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	135	568	0	ENST00000353224.5:c.98C>T	p.Thr33Ile	p.T33I	ENST00000353224	NM_177990.2	33	aCc/aTc																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188255	10188256	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAATTATTTGTGCCATCTCTCAATGTTGACGGACAGCCTATT			P-0006387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	78	527	0	ENST00000256474.2:c.400_442dup	p.Phe148Ter	p.F148*	ENST00000256474	NM_000551.3	133	act/acTGAATTATTTGTGCCATCTCTCAATGTTGACGGACAGCCTATTt																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52437886	52437892	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCCCT	CTTCCCT	-			P-0006387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	160	638	0	ENST00000460680.1:c.1269_1275del	p.Gly424GlnfsTer4	p.G424Qfs*4	ENST00000460680	NM_004656.3	423	acAGGGAAG/ac																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52685766	52685777	+	protein_altering_variant	In_Frame_Del	DEL	TCTGGGCAATGG	TCTGGGCAATGG	CCC			P-0006387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	132	561	0	ENST00000394830.3:c.695_706delinsGGG	p.Thr232_Arg236delinsArgGly	p.T232_R236delinsRG	ENST00000394830	NM_018313.4	232	aCCATTGCCCAGAgg/aGGGgg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	318	480	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974744	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0006722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	130	247	0	ENST00000304494.5:c.52_83del	p.Thr18AlafsTer15	p.T18Afs*15	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTg/g																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974744	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	ACCTCCTCTACCCGACCCCGGGCCGCGGCCGT	-			P-0006722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	130	247	0	ENST00000304494.5:c.52_83del	p.Thr18AlafsTer15	p.T18Afs*15	ENST00000304494	NM_000077.4	18	ACGGCCGCGGCCCGGGGTCGGGTAGAGGAGGTg/g																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106247	27106247	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	59	370	0	ENST00000324856.7:c.5858A>G	p.Lys1953Arg	p.K1953R	ENST00000324856	NM_006015.4	1953	aAg/aGg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178947852	178947852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1236	236	521	0	ENST00000263967.3:c.2727C>A	p.Phe909Leu	p.F909L	ENST00000263967	NM_006218.2	909	ttC/ttA																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0006722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	219	401	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307																																													NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225368427	225368428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTCTC			P-0006722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	332	396	1	ENST00000264414.4:c.1314_1318dup	p.Leu440ArgfsTer17	p.L440Rfs*17	ENST00000264414	NM_003590.4	440	ctt/cGAGACtt																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	60	357	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0012207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	216	433	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
CDKN1A	1026	MSKCC	GRCh37	6	36652198	36652199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	91	471	0	ENST00000244741.5:c.322dup	p.Glu108GlyfsTer21	p.E108Gfs*21	ENST00000244741	NM_000389.4	107	gag/gaGg																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652097	36652098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	98	515	0	ENST00000244741.5:c.222dup	p.Lys75GlnfsTer14	p.K75Qfs*14	ENST00000244741	NM_000389.4	73	-/C																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806567	1806567	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs138986264		P-0012207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	300	521	0	ENST00000260795.2:c.1283A>G	p.Asn428Ser	p.N428S	ENST00000260795		428	aAc/aGc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116339836	116339836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	156	605	1	ENST00000397752.3:c.698C>T	p.Ser233Phe	p.S233F	ENST00000397752	NM_000245.2	233	tCc/tTc																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135781005	135781005	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	220	974	0	ENST00000298552.3:c.1960C>T	p.Gln654Ter	p.Q654*	ENST00000298552	NM_001162426.1	654	Cag/Tag																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63851692	63851692	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	155	527	0	ENST00000279873.7:c.2470A>T	p.Met824Leu	p.M824L	ENST00000279873	NM_032199.2	824	Atg/Ttg																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95583979	95583979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	88	365	0	ENST00000343455.3:c.1489G>A	p.Glu497Lys	p.E497K	ENST00000343455	NM_177438.2	497	Gaa/Aaa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16022773	16022773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	106	443	0	ENST00000268712.3:c.1879C>T	p.Arg627Ter	p.R627*	ENST00000268712	NM_006311.3	627	Cga/Tga																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	209	282	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0003768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	112	362	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48573563	48573564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	90	206	0	ENST00000342988.3:c.153dupA	p.Asp52ArgfsTer2	p.D52Rfs*2	ENST00000342988	NM_005359.5	49	-/A																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38271527	38271527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003768-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	102	240	0	ENST00000425967.3:c.2294G>A	p.Arg765Gln	p.R765Q	ENST00000425967	NM_001174067.1	765	cGg/cAg																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1568	215	530	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	509	753	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																												NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	353	574	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162748502	162748502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	11	340	1	ENST00000367921.3:c.2416C>T	p.Arg806Ter	p.R806*	ENST00000367921	NM_006182.2	806	Cga/Tga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107046	27107047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	151	390	0	ENST00000324856.7:c.6659dup	p.Asn2220LysfsTer5	p.N2220Kfs*5	ENST00000324856	NM_006015.4	2219	-/A																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244824	46244824	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1100	132	751	0	ENST00000334344.6:c.2918C>G	p.Ser973Ter	p.S973*	ENST00000334344	NM_152641.2	973	tCa/tGa																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246668	46246668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			91	28	168	0	ENST00000334344.6:c.4762G>A	p.Val1588Met	p.V1588M	ENST00000334344	NM_152641.2	1588	Gtg/Atg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115118782	115118783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	92	550	0	ENST00000257566.3:c.558dup	p.His187SerfsTer40	p.H187Sfs*40	ENST00000257566	NM_016569.3	186	-/T																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99451941	99451941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	132	436	0	ENST00000268035.6:c.1275C>G	p.Asn425Lys	p.N425K	ENST00000268035	NM_000875.3	425	aaC/aaG																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89877455	89877455	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1664	92	785	0	ENST00000389301.3:c.308C>G	p.Ser103Ter	p.S103*	ENST00000389301	NM_000135.2	103	tCa/tGa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187628392	187628392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	51	693	1	ENST00000441802.2:c.2590G>A	p.Asp864Asn	p.D864N	ENST00000441802	NM_005245.3	864	Gac/Aac																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178310	56178310	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	51	369	0	ENST00000399503.3:c.3285del	p.Phe1095LeufsTer22	p.F1095Lfs*22	ENST00000399503	NM_005921.1	1095	Ttt/tt																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2976741	2976741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1951	290	714	0	ENST00000396946.4:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000396946	NM_032415.4	424	cGg/cAg																																												NEWRECORD																																		
RAC1	0	MSKCC	GRCh37	7	6441589	6441589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	68	231	0	ENST00000356142.4:c.436G>C	p.Glu146Gln	p.E146Q	ENST00000356142	NM_018890.3	146	Gag/Cag																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140481390	140481390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014702-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			329	37	377	0	ENST00000288602.6:c.1418A>T	p.Lys473Met	p.K473M	ENST00000288602	NM_004333.4	473	aAg/aTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	9	390	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47162353	47162353	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0005913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	41	312	0	ENST00000409792.3:c.3773T>G	p.Leu1258Ter	p.L1258*	ENST00000409792	NM_014159.6	1258	tTa/tGa																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55976637	55976637	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	106	619	1	ENST00000263923.4:c.1188C>A	p.Tyr396Ter	p.Y396*	ENST00000263923	NM_002253.2	396	taC/taA																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55273273	55273273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	133	393	0	ENST00000275493.2:c.3596G>C	p.Arg1199Thr	p.R1199T	ENST00000275493	NM_005228.3	1199	aGg/aCg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426393	49426393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	111	640	0	ENST00000301067.7:c.12095C>T	p.Ala4032Val	p.A4032V	ENST00000301067	NM_003482.3	4032	gCc/gTc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112553	115112553	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	56	435	0	ENST00000257566.3:c.1187C>G	p.Ser396Cys	p.S396C	ENST00000257566	NM_016569.3	396	tCc/tGc																																												NEWRECORD																																		
XIAP	0	MSKCC	GRCh37	X	123025111	123025111	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	112	302	0	ENST00000355640.3:c.1001A>T	p.Lys334Met	p.K334M	ENST00000355640		334	aAg/aTg																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188250	10188251	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAAA			P-0005913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	127	586	0	ENST00000256474.2:c.395_398dup	p.Glu134AsnfsTer2	p.E134Nfs*2	ENST00000256474	NM_000551.3	131	-/CAAA																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52702588	52702589	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AT			P-0005913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	59	452	0	ENST00000394830.3:c.309_310delinsAT	p.Met103_Glu104delinsIleTer	p.M103_E104delinsI*	ENST00000394830	NM_018313.4	103	atGGaa/atATaa																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	147	660	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1286	51	1079	2	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	89	396	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	149	330	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176671198	176671198	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	88	494	0	ENST00000439151.2:c.4305C>A	p.Cys1435Ter	p.C1435*	ENST00000439151	NM_022455.4	1435	tgC/tgA																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95557629	95557629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	27	664	0	ENST00000343455.3:c.5438A>G	p.Glu1813Gly	p.E1813G	ENST00000343455	NM_177438.2	1813	gAg/gGg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	22	542	2	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	49	621	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																												NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	62	761	2	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39923645	39923645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	54	757	3	ENST00000378444.4:c.3446C>T	p.Ala1149Val	p.A1149V	ENST00000378444	NM_001123385.1	1149	gCg/gTg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1247	136	1114	2	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
CCND1	0	MSKCC	GRCh37	11	69466021	69466021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	65	654	0	ENST00000227507.2:c.859C>T	p.Pro287Ser	p.P287S	ENST00000227507	NM_053056.2	287	Ccc/Tcc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	127	790	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100183	27100183	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	30	479	0	ENST00000324856.7:c.3979C>T	p.Gln1327Ter	p.Q1327*	ENST00000324856	NM_006015.4	1327	Cag/Tag																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89390982	89390982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	36	597	0	ENST00000336596.2:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000336596	NM_005233.5	350	Gac/Aac																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	66	726	4	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142168368	142168368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	61	537	0	ENST00000350721.4:c.7838C>T	p.Pro2613Leu	p.P2613L	ENST00000350721	NM_001184.3	2613	cCg/cTg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72992292	72992292	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140602496		P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1335	136	1256	4	ENST00000268489.5:c.1753G>A	p.Gly585Ser	p.G585S	ENST00000268489	NM_006885.3	585	Ggc/Agc																																												NEWRECORD																																		
MUTYH	0	MSKCC	GRCh37	1	45797852	45797852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	147	646	1	ENST00000372115.3:c.877C>T	p.Arg293Trp	p.R293W	ENST00000372115	NM_001048171.1	293	Cgg/Tgg																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178095943	178095943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	53	479	1	ENST00000397062.3:c.1388C>T	p.Ala463Val	p.A463V	ENST00000397062	NM_006164.4	463	gCt/gTt																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37081744	37081744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	52	643	0	ENST00000231790.2:c.1626G>T	p.Gln542His	p.Q542H	ENST00000231790	NM_000249.3	542	caG/caT																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128200073	128200073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	58	771	3	ENST00000341105.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000341105	NM_032638.4	411	gCg/gTg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178942528	178942528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	31	353	0	ENST00000263967.3:c.2335C>A	p.Leu779Met	p.L779M	ENST00000263967	NM_006218.2	779	Ctg/Atg																																												NEWRECORD																																		
SOX2	0	MSKCC	GRCh37	3	181430614	181430614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	31	341	0	ENST00000325404.1:c.466C>T	p.Arg156Cys	p.R156C	ENST00000325404	NM_003106.3	156	Cgc/Tgc																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176678775	176678775	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	50	653	0	ENST00000439151.2:c.4686C>A	p.Cys1562Ter	p.C1562*	ENST00000439151	NM_022455.4	1562	tgC/tgA																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176707797	176707797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	121	557	0	ENST00000439151.2:c.5854C>T	p.Arg1952Trp	p.R1952W	ENST00000439151	NM_022455.4	1952	Cgg/Tgg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157528079	157528079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	56	264	0	ENST00000346085.5:c.5804C>T	p.Ala1935Val	p.A1935V	ENST00000346085	NM_020732.3	1935	gCg/gTg																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117864225	117864225	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	58	883	4	ENST00000297338.2:c.1432C>T	p.Arg478Ter	p.R478*	ENST00000297338	NM_006265.2	478	Cga/Tga																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145737699	145737699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	36	423	0	ENST00000428558.2:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000428558	NM_004260.3	1022	Cgt/Tgt																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80412547	80412547	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	34	436	0	ENST00000286548.4:c.494A>T	p.Asp165Val	p.D165V	ENST00000286548	NM_002072.3	165	gAc/gTc																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110250065	110250065	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	34	389	0	ENST00000374672.4:c.610C>A	p.Leu204Met	p.L204M	ENST00000374672	NM_004235.4	204	Ctg/Atg																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133760066	133760066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	33	495	1	ENST00000318560.5:c.2389G>A	p.Val797Ile	p.V797I	ENST00000318560	NM_005157.4	797	Gtc/Atc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139399225	139399225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	30	362	4	ENST00000277541.6:c.4918G>A	p.Ala1640Thr	p.A1640T	ENST00000277541	NM_017617.3	1640	Gca/Aca																																												NEWRECORD																																		
YAP1	0	MSKCC	GRCh37	11	101981765	101981765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	36	469	0	ENST00000282441.5:c.186G>T	p.Glu62Asp	p.E62D	ENST00000282441	NM_001130145.2	62	gaG/gaT																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108124717	108124717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	43	418	0	ENST00000278616.4:c.2075G>A	p.Arg692His	p.R692H	ENST00000278616	NM_000051.3	692	cGc/cAc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108165786	108165786	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	42	392	0	ENST00000278616.4:c.4909G>A	p.Asp1637Asn	p.D1637N	ENST00000278616	NM_000051.3	1637	Gat/Aat																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118339561	118339561	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	90	567	0	ENST00000534358.1:c.502+2T>C		p.X168_splice	ENST00000534358	NM_005933.3	168																																													NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856209	111856209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	38	334	1	ENST00000341259.2:c.260G>A	p.Arg87His	p.R87H	ENST00000341259	NM_005475.2	87	cGc/cAc																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856280	111856280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	10	65	0	ENST00000341259.2:c.331G>A	p.Ala111Thr	p.A111T	ENST00000341259	NM_005475.2	111	Gcc/Acc																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134160	41134160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	114	1095	3	ENST00000379561.5:c.1468C>T	p.Arg490Trp	p.R490W	ENST00000379561	NM_002015.3	490	Cgg/Tgg																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7983596	7983596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	45	649	0	ENST00000319144.4:c.711G>T	p.Lys237Asn	p.K237N	ENST00000319144	NM_001139.2	237	aaG/aaT																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119861	70119861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	79	624	0	ENST00000245479.2:c.863C>T	p.Thr288Ile	p.T288I	ENST00000245479	NM_000346.3	288	aCc/aTc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602589	10602589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	38	546	1	ENST00000171111.5:c.989C>T	p.Thr330Ile	p.T330I	ENST00000171111	NM_203500.1	330	aCc/aTc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36259300	36259300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	26	185	1	ENST00000300305.3:c.191G>A	p.Gly64Asp	p.G64D	ENST00000300305		64	gGc/gAc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045486	47045486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	48	647	0	ENST00000329236.7:c.2219C>T	p.Ala740Val	p.A740V	ENST00000329236	NM_001204466.1	740	gCa/gTa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187517927	187517928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	133	716	0	ENST00000441802.2:c.12766dup	p.Tyr4256LeufsTer8	p.Y4256Lfs*8	ENST00000441802	NM_005245.3	4256	tac/tTac																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49424442	49424443	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0011569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	120	572	0	ENST00000301067.7:c.13780dup	p.Ala4594GlyfsTer12	p.A4594Gfs*12	ENST00000301067	NM_003482.3	4594	gcc/gGcc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	429	685	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25469603	25469603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1571	269	751	0	ENST00000264709.3:c.1165G>A	p.Asp389Asn	p.D389N	ENST00000264709	NM_175629.2	389	Gac/Aac																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115985	8115989	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	AGAGC	AGAGC	-			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	104	311	0	ENST00000346208.3:c.1331_*3delAGAGC		p.*444fs*	ENST00000346208		444																																													NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38512297	38512298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	63	786	0	ENST00000254066.5:c.1211dup	p.Ser405LeufsTer41	p.S405Lfs*41	ENST00000254066	NM_000964.3	403	ccg/ccGg																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637714	176637714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1385	311	815	0	ENST00000439151.2:c.2314G>T	p.Ala772Ser	p.A772S	ENST00000439151	NM_022455.4	772	Gca/Tca																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38287398	38287398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2380	214	660	0	ENST00000425967.3:c.259C>T	p.Arg87Cys	p.R87C	ENST00000425967	NM_001174067.1	87	Cgc/Tgc																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5044450	5044450	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	226	718	0	ENST00000381652.3:c.399del	p.His134MetfsTer33	p.H134Mfs*33	ENST00000381652	NM_004972.3	133	cGg/cg																																												NEWRECORD																																		
FGF4	0	MSKCC	GRCh37	11	69588238	69588241	+	missense_variant	Missense_Mutation	ONP	CATC	CATC	GATT			P-0014954-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1132	165	469	0	ENST00000168712.1:c.457_460delinsAATC	p.Asp153_Glu154delinsAsnGln	p.D153_E154delinsNQ	ENST00000168712	NM_002007.2	153	GATGag/AATCag																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	103	218	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0008532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	123	197	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5238983	5238983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	88	438	0	ENST00000357368.4:c.1796C>T	p.Pro599Leu	p.P599L	ENST00000357368	NM_002850.3	599	cCg/cTg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44937741	44937742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	193	212	0	ENST00000377967.4:c.2931dup	p.Lys978Ter	p.K978*	ENST00000377967	NM_021140.2	977	ctt/cTtt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	103	201	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115115427	115115427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	159	435	0	ENST00000257566.3:c.899C>T	p.Ala300Val	p.A300V	ENST00000257566	NM_016569.3	300	gCa/gTa																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42845298	42845298	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	63	308	0	ENST00000398585.3:c.964A>G	p.Ile322Val	p.I322V	ENST00000398585	NM_001135099.1	322	Atc/Gtc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115118599	115118684	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGCTGAAACTCATGAAATGGGAAGCACTGCCTTTGACTGAGTGAAGGAGGAGAAAATTTTACTGAAGAGAGCAATGAAACTTACA	GGGCTGAAACTCATGAAATGGGAAGCACTGCCTTTGACTGAGTGAAGGAGGAGAAAATTTTACTGAAGAGAGCAATGAAACTTACA	-			P-0004406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	66	153	0	ENST00000257566.3:c.657_657+85del		p.X219_splice	ENST00000257566	NM_016569.3	219																																													NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842612	68842613	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	138	368	0	ENST00000261769.5:c.549dup	p.Lys184GlnfsTer15	p.K184Qfs*15	ENST00000261769	NM_004360.3	183	gac/gaCc																																												NEWRECORD																																		
H3F3A	0	MSKCC	GRCh37	1	226253418	226253419	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0004406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	23	75	0	ENST00000366813.1:c.191_192del	p.Arg64GlnfsTer16	p.R64Qfs*16	ENST00000366813		64	CGc/c																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	220	254	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0013187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	309	526	0	ENST00000269305.4:c.560-2A>G		p.X187_splice	ENST00000269305	NM_001126112.2	187																																													NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48954315	48954317	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0013187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	109	297	0	ENST00000267163.4:c.1439_1441del	p.Asn480del	p.N480del	ENST00000267163	NM_000321.2	479	gACAac/gac																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252852	36252853	+	splice_donor_variant	Splice_Site	INS	-	-	CCTCTT			P-0013187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	225	433	0	ENST00000300305.3:c.504_508+1dup		p.X168_splice	ENST00000300305		168																																													NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857910	9857910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	233	352	0	ENST00000330684.3:c.3491C>T	p.Thr1164Met	p.T1164M	ENST00000330684	NM_001134407.1	1164	aCg/aTg																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	680	279	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198264987	198264987	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	449	331	0	ENST00000335508.6:c.2890A>G	p.Thr964Ala	p.T964A	ENST00000335508	NM_012433.2	964	Act/Gct																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8341878	8341878	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	504	527	0	ENST00000356435.5:c.4762A>G	p.Met1588Val	p.M1588V	ENST00000356435		1588	Atg/Gtg																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119149003	119149003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	360	269	0	ENST00000264033.4:c.1223G>C	p.Trp408Ser	p.W408S	ENST00000264033	NM_005188.3	408	tGg/tCg																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37687182	37687182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	240	307	0	ENST00000447079.4:c.4086G>C	p.Leu1362Phe	p.L1362F	ENST00000447079	NM_015083.1	1362	ttG/ttC																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37687370	37687370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	232	291	0	ENST00000447079.4:c.4274G>A	p.Gly1425Glu	p.G1425E	ENST00000447079	NM_015083.1	1425	gGa/gAa																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37687502	37687502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	150	217	0	ENST00000447079.4:c.4406G>A	p.Gly1469Glu	p.G1469E	ENST00000447079	NM_015083.1	1469	gGa/gAa																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37687526	37687526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	140	191	0	ENST00000447079.4:c.4430G>T	p.Arg1477Ile	p.R1477I	ENST00000447079	NM_015083.1	1477	aGa/aTa																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37687417	37687417	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0008375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	175	279	0	ENST00000447079.4:c.4321delinsAA	p.Gly1441LysfsTer72	p.G1441Kfs*72	ENST00000447079	NM_015083.1	1441	Ggg/AAgg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	9	107	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93955087	93955087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	44	409	0	ENST00000369303.4:c.2811G>T	p.Met937Ile	p.M937I	ENST00000369303	NM_004440.3	937	atG/atT																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106199	27106200	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	110	197	0	ENST00000324856.7:c.5811dup	p.Lys1938GlnfsTer7	p.K1938Qfs*7	ENST00000324856	NM_006015.4	1937	agc/agCc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	118	224	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	252	284	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226567643	226567643	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	198	337	2	ENST00000366794.5:c.1523A>C	p.Lys508Thr	p.K508T	ENST00000366794	NM_001618.3	508	aAg/aCg																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134880962	134880962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	205	287	0	ENST00000398015.3:c.1525C>T	p.Arg509Cys	p.R509C	ENST00000398015	NM_004441.4	509	Cgc/Tgc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174098	112174098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	177	294	1	ENST00000257430.4:c.2807A>G	p.Asn936Ser	p.N936S	ENST00000257430	NM_000038.5	936	aAt/aGt																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117614	70117614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	527	342	1	ENST00000245479.2:c.82G>T	p.Glu28Ter	p.E28*	ENST00000245479	NM_000346.3	28	Gag/Tag																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15281517	15281517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	238	444	2	ENST00000263388.2:c.4856G>A	p.Arg1619His	p.R1619H	ENST00000263388	NM_000435.2	1619	cGc/cAc																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12013728	12013728	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	147	263	0	ENST00000353533.5:c.673del	p.Ile225LeufsTer51	p.I225Lfs*51	ENST00000353533	NM_003010.3	224	Aaa/aa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175171	112175172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0012974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	89	158	0	ENST00000257430.4:c.3881_3882insAA	p.Glu1295ArgfsTer11	p.E1295Rfs*11	ENST00000257430	NM_000038.5	1294	cag/cAAag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	498	360	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106547360	106547360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	183	317	0	ENST00000369096.4:c.597G>C	p.Trp199Cys	p.W199C	ENST00000369096	NM_001198.3	199	tgG/tgC																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133759701	133759701	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	110	184	0	ENST00000318560.5:c.2024A>C	p.Glu675Ala	p.E675A	ENST00000318560	NM_005157.4	675	gAg/gCg																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988192	36988192	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0011369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	98	134	0	ENST00000354822.5:c.461C>G	p.Ala154Gly	p.A154G	ENST00000354822	NM_001079668.2	154	gCc/gGc																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106536249	106536341	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGCGGTACTTCGGTTCAGGCGGAGGCATCCTTACCAAGGAATCTGCTTTTCAAGTATGCCACCAACAGTGAAGAGGTAAGCCTCTGGTTTAT	TGGCGGTACTTCGGTTCAGGCGGAGGCATCCTTACCAAGGAATCTGCTTTTCAAGTATGCCACCAACAGTGAAGAGGTAAGCCTCTGGTTTAT	-			P-0011369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	298	378	0	ENST00000369096.4:c.218_291+19del		p.X73_splice	ENST00000369096	NM_001198.3	73																																													NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41245492	41245493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	603	553	0	ENST00000357654.3:c.2055dup	p.Glu686Ter	p.E686*	ENST00000357654	NM_007294.3	685	-/T																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157100171	157100172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	10	169	0	ENST00000346085.5:c.1114dupC	p.Arg372ProfsTer163	p.R372Pfs*163	ENST00000346085	NM_020732.3	370	tcc/tCcc																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103518992	103518992	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	42	259	1	ENST00000355739.4:c.2330G>A	p.Arg777His	p.R777H	ENST00000355739	NM_000123.3	777	cGc/cAc																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	88	577	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																												NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	51	1105	3	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16254929	16254929	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	80	482	0	ENST00000375759.3:c.2194C>T	p.Arg732Ter	p.R732*	ENST00000375759	NM_015001.2	732	Cga/Tga																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	71	383	0	ENST00000371953.3:c.395G>A	p.Gly132Asp	p.G132D	ENST00000371953	NM_000314.4	132	gGt/gAt																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	93	652	0	ENST00000349496.5:c.95A>C	p.Asp32Ala	p.D32A	ENST00000349496	NM_001904.3	32	gAc/gCc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023827	27023827	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	85	616	0	ENST00000324856.7:c.936del	p.Gly314AlafsTer49	p.G314Afs*49	ENST00000324856	NM_006015.4	311	taC/ta																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67522741	67522741	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	82	413	1	ENST00000274335.5:c.244del	p.Ile82SerfsTer32	p.I82Sfs*32	ENST00000274335		80	Aaa/aa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916824	178916824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201269904		P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	141	1305	3	ENST00000263967.3:c.211G>A	p.Val71Ile	p.V71I	ENST00000263967	NM_006218.2	71	Gta/Ata																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151836879	151836879	+	splice_region_variant,intron_variant	Splice_Region	DEL	A	A	-			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	68	511	6	ENST00000262189.6:c.14344-3delT		p.X4782_splice	ENST00000262189	NM_170606.2	4782																																													NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023290	27023290	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	97	380	0	ENST00000324856.7:c.400del	p.Ala134ArgfsTer98	p.A134Rfs*98	ENST00000324856	NM_006015.4	132	gtG/gt																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36987169	36987169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	33	328	0	ENST00000354822.5:c.520G>T	p.Gly174Cys	p.G174C	ENST00000354822	NM_001079668.2	174	Ggc/Tgc																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007741	45007742	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	55	521	0	ENST00000558401.1:c.194_195delGA	p.Arg65AsnfsTer2	p.R65Nfs*2	ENST00000558401	NM_004048.2	63	gGA/g																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2210774	2210774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	36	560	0	ENST00000398665.3:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000398665	NM_032482.2	424	cGg/cAg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15303186	15303186	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	141	630	0	ENST00000263388.2:c.340+2T>C		p.X114_splice	ENST00000263388	NM_000435.2	114																																													NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25965612	25965612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	93	605	0	ENST00000435504.4:c.3594G>T	p.Glu1198Asp	p.E1198D	ENST00000435504		1198	gaG/gaT																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187540101	187540101	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	64	691	1	ENST00000441802.2:c.7639C>T	p.Gln2547Ter	p.Q2547*	ENST00000441802	NM_005245.3	2547	Cag/Tag																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140454013	140454013	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	44	486	0	ENST00000288602.6:c.1715T>G	p.Ile572Ser	p.I572S	ENST00000288602	NM_004333.4	572	aTc/aGc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117715345	117715345	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs145259410		P-0005948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	83	377	0	ENST00000368508.3:c.1144T>C	p.Tyr382His	p.Y382H	ENST00000368508	NM_002944.2	382	Tat/Cat																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8097755	8097756	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	489	595	0	ENST00000346208.3:c.139dup	p.Val47GlyfsTer6	p.V47Gfs*6	ENST00000346208		46	gag/gaGg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10597438	10597439	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002272-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			568	43	549	0	ENST00000171111.5:c.1764dup	p.Asp589ArgfsTer30	p.D589Rfs*30	ENST00000171111	NM_203500.1	588	-/A																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	157	397	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	44	442	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11259674	11259674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	78	371	0	ENST00000361445.4:c.4031C>T	p.Ala1344Val	p.A1344V	ENST00000361445	NM_004958.3	1344	gCc/gTc																																												NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835780	68835781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	118	420	0	ENST00000261769.5:c.377dup	p.Pro127AlafsTer41	p.P127Afs*41	ENST00000261769	NM_004360.3	124	cgc/cgCc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180053023	180053023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	45	386	0	ENST00000261937.6:c.1267delC	p.Gln423ArgfsTer70	p.Q423Rfs*70	ENST00000261937	NM_182925.4	423	Cag/ag																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	262	540	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	151	233	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49418718	49418718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	65	236	0	ENST00000301067.7:c.15796C>T	p.Arg5266Cys	p.R5266C	ENST00000301067	NM_003482.3	5266	Cgc/Tgc																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577290	64577290	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	45	456	1	ENST00000337652.1:c.292C>T	p.Arg98Ter	p.R98*	ENST00000337652	NM_130803.2	98	Cga/Tga																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41743896	41743896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	212	489	0	ENST00000301178.4:c.836delC	p.Pro279GlnfsTer18	p.P279Qfs*18	ENST00000301178	NM_021913.4	277	gaC/ga																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56782275	56782275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	143	560	3	ENST00000308159.5:c.116C>T	p.Ala39Val	p.A39V	ENST00000308159	NM_014669.4	39	gCg/gTg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16202858	16202858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	136	417	0	ENST00000375759.3:c.566G>A	p.Arg189Gln	p.R189Q	ENST00000375759	NM_015001.2	189	cGa/cAa																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206649592	206649592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	132	343	1	ENST00000367120.3:c.427C>T	p.Arg143Cys	p.R143C	ENST00000367120	NM_014002.3	143	Cgc/Tgc																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48028285	48028285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	97	318	0	ENST00000234420.5:c.3163G>A	p.Ala1055Thr	p.A1055T	ENST00000234420	NM_000179.2	1055	Gca/Aca																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198265061	198265061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	196	401	0	ENST00000335508.6:c.2816G>A	p.Arg939His	p.R939H	ENST00000335508	NM_012433.2	939	cGt/cAt																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227663034	227663034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	115	292	0	ENST00000305123.5:c.421G>A	p.Gly141Ser	p.G141S	ENST00000305123	NM_005544.2	141	Ggc/Agc																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71247373	71247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	39	317	1	ENST00000318789.4:c.160G>A	p.Ala54Thr	p.A54T	ENST00000318789	NM_032682.5	54	Gcc/Acc																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89480469	89480469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	81	388	1	ENST00000336596.2:c.2306G>A	p.Arg769His	p.R769H	ENST00000336596	NM_005233.5	769	cGt/cAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112178228	112178228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	129	549	0	ENST00000257430.4:c.6937G>A	p.Ala2313Thr	p.A2313T	ENST00000257430	NM_000038.5	2313	Gcc/Acc																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176638697	176638697	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	114	485	0	ENST00000439151.2:c.3297T>G	p.Ser1099Arg	p.S1099R	ENST00000439151	NM_022455.4	1099	agT/agG																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176696757	176696757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	127	421	1	ENST00000439151.2:c.5458G>A	p.Val1820Met	p.V1820M	ENST00000439151	NM_022455.4	1820	Gtg/Atg																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30682856	30682856	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113702536		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	503	672	1	ENST00000376406.3:c.97C>T	p.Arg33Trp	p.R33W	ENST00000376406	NM_014641.2	33	Cgg/Tgg																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509063	106509063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	73	383	0	ENST00000359195.3:c.1057T>C	p.Ser353Pro	p.S353P	ENST00000359195	NM_002649.2	353	Tcc/Ccc																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128845233	128845233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	30	217	0	ENST00000249373.3:c.727C>A	p.Leu243Ile	p.L243I	ENST00000249373	NM_005631.4	243	Ctc/Atc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151845190	151845190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	126	450	0	ENST00000262189.6:c.13822C>T	p.Arg4608Cys	p.R4608C	ENST00000262189	NM_170606.2	4608	Cgc/Tgc																																												NEWRECORD																																		
NKX3-1	0	MSKCC	GRCh37	8	23540288	23540288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	57	245	0	ENST00000380871.4:c.115G>A	p.Ala39Thr	p.A39T	ENST00000380871	NM_006167.3	39	Gcg/Acg																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117878944	117878944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	128	593	0	ENST00000297338.2:c.25A>G	p.Ser9Gly	p.S9G	ENST00000297338	NM_006265.2	9	Agt/Ggt																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64574661	64574661	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149783078		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	34	321	0	ENST00000337652.1:c.829C>T	p.His277Tyr	p.H277Y	ENST00000337652	NM_130803.2	277	Cat/Tat																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108124701	108124701	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	73	448	0	ENST00000278616.4:c.2059A>G	p.Lys687Glu	p.K687E	ENST00000278616	NM_000051.3	687	Aag/Gag																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245621	46245621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	97	516	0	ENST00000334344.6:c.3715G>T	p.Gly1239Cys	p.G1239C	ENST00000334344	NM_152641.2	1239	Ggt/Tgt																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115115398	115115398	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	540	611	0	ENST00000257566.3:c.928C>T	p.Arg310Ter	p.R310*	ENST00000257566	NM_016569.3	310	Cga/Tga																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28601297	28601297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	98	633	0	ENST00000241453.7:c.2135G>A	p.Arg712Lys	p.R712K	ENST00000241453	NM_004119.2	712	aGg/aAg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3801727	3801727	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	80	447	0	ENST00000262367.5:c.3779C>T	p.Thr1260Met	p.T1260M	ENST00000262367	NM_004380.2	1260	aCg/aTg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68771320	68771320	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	37	229	0	ENST00000261769.5:c.2T>C	p.Met1?	p.M1?	ENST00000261769	NM_004360.3	1	aTg/aCg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821829	72821829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140437495		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	158	719	2	ENST00000268489.5:c.10346C>T	p.Ala3449Val	p.A3449V	ENST00000268489	NM_006885.3	3449	gCg/gTg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72822274	72822274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	207	744	0	ENST00000268489.5:c.9901G>T	p.Ala3301Ser	p.A3301S	ENST00000268489	NM_006885.3	3301	Gca/Tca																																												NEWRECORD																																		
GPS2	0	MSKCC	GRCh37	17	7216731	7216731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	110	667	0	ENST00000380728.2:c.692C>T	p.Ala231Val	p.A231V	ENST00000380728		231	gCt/gTt																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37879819	37879819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	131	315	1	ENST00000269571.5:c.2114C>T	p.Ala705Val	p.A705V	ENST00000269571		705	gCg/gTg																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40475607	40475607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	182	694	4	ENST00000264657.5:c.1637G>T	p.Trp546Leu	p.W546L	ENST00000264657	NM_139276.2	546	tGg/tTg																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696682	47696682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	160	546	0	ENST00000347630.2:c.266T>C	p.Leu89Ser	p.L89S	ENST00000347630	NM_001007230.1	89	tTa/tCa																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59878691	59878691	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	155	582	0	ENST00000259008.2:c.1063G>A	p.Ala355Thr	p.A355T	ENST00000259008	NM_032043.2	355	Gcc/Acc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5238951	5238951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	113	311	1	ENST00000357368.4:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000357368	NM_002850.3	610	Cgg/Tgg																																												NEWRECORD																																		
CCNE1	0	MSKCC	GRCh37	19	30303922	30303922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	140	317	1	ENST00000262643.3:c.158C>T	p.Ala53Val	p.A53V	ENST00000262643	NM_001238.2	53	gCg/gTg																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31388006	31388006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	120	533	1	ENST00000328111.2:c.1807G>A	p.Ala603Thr	p.A603T	ENST00000328111	NM_006892.3	603	Gct/Act																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36206814	36206814	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150042294		P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	71	239	1	ENST00000300305.3:c.698G>A	p.Arg233His	p.R233H	ENST00000300305		233	cGc/cAc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41574489	41574489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	91	360	2	ENST00000263253.7:c.6774G>T	p.Gln2258His	p.Q2258H	ENST00000263253	NM_001429.3	2258	caG/caT																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44929238	44929238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	108	638	1	ENST00000377967.4:c.2338C>T	p.Leu780Phe	p.L780F	ENST00000377967	NM_021140.2	780	Ctc/Ttc																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53223548	53223548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	40	232	0	ENST00000375401.3:c.3811C>T	p.Arg1271Trp	p.R1271W	ENST00000375401	NM_004187.3	1271	Cgg/Tgg																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66937402	66937402	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	163	652	0	ENST00000374690.3:c.2256G>A	p.Trp752Ter	p.W752*	ENST00000374690	NM_000044.3	752	tgG/tgA																																												NEWRECORD																																		
U2AF1	0	MSKCC	GRCh37	21	44514671	44514672	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	117	331	0	ENST00000291552.4:c.484_485del	p.Glu162MetfsTer32	p.E162Mfs*32	ENST00000291552	NM_006758.2	162	GAa/a																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	38	305	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	38	305	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971026	21971026	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	38	305	0	ENST00000304494.5:c.332del	p.Gly111AlafsTer35	p.G111Afs*35	ENST00000304494	NM_000077.4	111	gGc/gc																																												NEWRECORD																																		
CALR	0	MSKCC	GRCh37	19	13050034	13050036	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	246	601	1	ENST00000316448.5:c.181_183del	p.Glu61del	p.E61del	ENST00000316448	NM_004343.3	60	GAG/-																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2962854	2962854	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	58	401	1	ENST00000396946.4:c.2054delG	p.Gly685AlafsTer31	p.G685Afs*31	ENST00000396946	NM_032415.4	685	gGc/gc																																												NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	52	170	1	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98224251	98224251	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	61	358	0	ENST00000331920.6:c.2590del	p.Glu864LysfsTer39	p.E864Kfs*39	ENST00000331920	NM_000264.3	864	Gaa/aa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118343529	118343529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	53	328	2	ENST00000534358.1:c.1660del	p.Gln554SerfsTer13	p.Q554Sfs*13	ENST00000534358	NM_005933.3	552	gCc/gc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173837	112173838	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	171	415	0	ENST00000257430.4:c.2547_2548del	p.Asp849GlufsTer62	p.D849Efs*62	ENST00000257430	NM_000038.5	849	gAT/g																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15989668	15989669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	56	378	0	ENST00000268712.3:c.3104dup	p.Leu1036SerfsTer35	p.L1036Sfs*35	ENST00000268712	NM_006311.3	1035	cct/ccCt																																												NEWRECORD																																		
XIAP	0	MSKCC	GRCh37	X	123040836	123040837	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0007596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	192	487	0	ENST00000355640.3:c.1302_1303del		p.X434_splice	ENST00000355640		434																																													NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221266	1221267	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	206	592	0	ENST00000326873.7:c.792dup	p.Glu265Ter	p.E265*	ENST00000326873	NM_000455.4	263	-/T																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40481661	40481661	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	286	708	0	ENST00000264657.5:c.1144del	p.Arg382GlyfsTer12	p.R382Gfs*12	ENST00000264657	NM_139276.2	382	Cgg/gg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	811	288	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32906916	32906919	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs80359279		P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	191	171	0	ENST00000380152.3:c.1310_1313delAAGA	p.Lys437IlefsTer22	p.K437Ifs*22	ENST00000380152		434	aAAAGa/aa																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	354393	354393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	328	432	0	ENST00000262320.3:c.1165G>A	p.Ala389Thr	p.A389T	ENST00000262320	NM_003502.3	389	Gcg/Acg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830265	72830265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	580	509	0	ENST00000268489.5:c.6316C>G	p.Pro2106Ala	p.P2106A	ENST00000268489	NM_006885.3	2106	Ccg/Gcg																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39713150	39713150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	133	212	1	ENST00000361337.2:c.556C>T	p.Pro186Ser	p.P186S	ENST00000361337	NM_003286.2	186	Cct/Tct																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70344629	70344629	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	276	533	0	ENST00000374080.3:c.1990G>C	p.Glu664Gln	p.E664Q	ENST00000374080		664	Gaa/Caa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577097	7577121	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTCCCAGGACAGGCACAAACACG	CTCTCCCAGGACAGGCACAAACACG	-			P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	575	439	0	ENST00000269305.4:c.817_841del	p.Arg273ThrfsTer64	p.R273Tfs*64	ENST00000269305	NM_001126112.2	273	CGTGTTTGTGCCTGTCCTGGGAGAGac/ac																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65560425	65560432	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CCTTCTCT	CCTTCTCT	-			P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	246	300	0	ENST00000358664.4:c.165_171+1del		p.X55_splice	ENST00000358664	NM_002382.4	55																																													NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32906919	32906923	+	protein_altering_variant	In_Frame_Ins	INS	GAAAG	GAAAG	AGAAAAGA			P-0012505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	64	174	0	ENST00000380152.3:c.1304_1308delinsAGAAAAGA	p.Arg435_Lys436delinsLysLysArg	p.R435_K436delinsKKR	ENST00000380152		435	aGAAAG/aAGAAAAGA																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	90	586	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65312350	65312351	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0014332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	286	629	0	ENST00000342505.4:c.1968_1969del	p.Val658ProfsTer50	p.V658Pfs*50	ENST00000342505	NM_002227.2	656	gtCTgt/gtgt																																												NEWRECORD																																		
KNSTRN	0	MSKCC	GRCh37	15	40683741	40683741	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	57	657	0	ENST00000249776.8:c.733C>G	p.His245Asp	p.H245D	ENST00000249776	NM_033286.3	245	Cac/Gac																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579388	7579389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	388	687	0	ENST00000269305.4:c.298dup	p.Gln100ProfsTer49	p.Q100Pfs*49	ENST00000269305	NM_001126112.2	100	cag/cCag																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	724485	724485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	132	581	1	ENST00000314574.4:c.1571C>T	p.Ser524Phe	p.S524F	ENST00000314574	NM_005433.3	524	tCc/tTc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48584503	48584521	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGTATACTGGGGGGCA	GCCAGTATACTGGGGGGCA	-			P-0014332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	21	354	0	ENST00000342988.3:c.680_698del	p.Ser227IlefsTer8	p.S227Ifs*8	ENST00000342988	NM_005359.5	226	GCCAGTATACTGGGGGGCAgc/gc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591792	48591792	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	20	395	0	ENST00000342988.3:c.956-1G>C		p.X319_splice	ENST00000342988	NM_005359.5	319																																													NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25464501	25464501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1135	80	601	1	ENST00000264709.3:c.2012C>T	p.Thr671Met	p.T671M	ENST00000264709	NM_175629.2	671	aCg/aTg																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72799490	72799490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	243	719	0	ENST00000325599.8:c.1679C>T	p.Ala560Val	p.A560V	ENST00000325599	NM_018130.2	560	gCt/gTt																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137525527	137525527	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	75	732	0	ENST00000367739.4:c.488C>A	p.Pro163His	p.P163H	ENST00000367739	NM_000416.2	163	cCc/cAc																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	68930119	68930119	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	194	533	0	ENST00000288368.4:c.180A>T	p.Lys60Asn	p.K60N	ENST00000288368	NM_024870.2	60	aaA/aaT																																												NEWRECORD																																		
AGO2	0	MSKCC	GRCh37	8	141559236	141559236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	164	661	1	ENST00000220592.5:c.1565T>C	p.Leu522Pro	p.L522P	ENST00000220592	NM_012154.3	522	cTg/cCg																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249397	110249397	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014332-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1728	191	982	0	ENST00000374672.4:c.1176G>C	p.Arg392Ser	p.R392S	ENST00000374672	NM_004235.4	392	agG/agC																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	139	699	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	258	649	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	92	540	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193202215	193202215	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	311	608	0	ENST00000367435.3:c.1247G>C	p.Gly416Ala	p.G416A	ENST00000367435	NM_024529.4	416	gGc/gCc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212426668	212426668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	182	657	0	ENST00000342788.4:c.2447G>C	p.Gly816Ala	p.G816A	ENST00000342788	NM_005235.2	816	gGa/gCa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212426680	212426680	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	193	694	0	ENST00000342788.4:c.2435A>G	p.Lys812Arg	p.K812R	ENST00000342788	NM_005235.2	812	aAg/aGg																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142177826	142177826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	98	476	1	ENST00000350721.4:c.7477G>T	p.Val2493Leu	p.V2493L	ENST00000350721	NM_001184.3	2493	Gta/Tta																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43606887	43606887	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	53	276	0	ENST00000355710.3:c.1496A>T	p.Gln499Leu	p.Q499L	ENST00000355710	NM_020975.4	499	cAg/cTg																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88472661	88472661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	114	307	0	ENST00000360948.2:c.1894C>A	p.His632Asn	p.H632N	ENST00000360948	NM_001012338.2	632	Cat/Aat																																												NEWRECORD																																		
SOX2	0	MSKCC	GRCh37	3	181430639	181430640	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC			P-0013306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	54	342	0	ENST00000325404.1:c.493_494insCCG	p.Asn164_Gly165insAla	p.N164_G165insA	ENST00000325404	NM_003106.3	164	aac/aaCGCc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	176	282	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	45	268	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	103	246	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180049782	180049782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	72	439	0	ENST00000261937.6:c.1606G>A	p.Val536Ile	p.V536I	ENST00000261937	NM_182925.4	536	Gtc/Atc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8485774	8485774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	110	260	0	ENST00000356435.5:c.3043C>T	p.Pro1015Ser	p.P1015S	ENST00000356435		1015	Cct/Tct																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15298024	15298024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	92	387	0	ENST00000263388.2:c.1732C>A	p.Arg578Ser	p.R578S	ENST00000263388	NM_000435.2	578	Cgc/Agc																																												NEWRECORD																																		
ZRSR2	0	MSKCC	GRCh37	X	15827437	15827437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	46	175	0	ENST00000307771.7:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000307771	NM_005089.3	185	Gat/Tat																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937705	76937705	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	119	187	0	ENST00000373344.5:c.3043G>C	p.Gly1015Arg	p.G1015R	ENST00000373344	NM_000489.3	1015	Ggc/Cgc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173689	112173690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	52	251	0	ENST00000257430.4:c.2403dupT	p.Asp802Ter	p.D802*	ENST00000257430	NM_000038.5	800	gtt/gTtt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	49	420	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	34	381	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248027	59248027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	135	334	0	ENST00000371222.2:c.716C>T	p.Thr239Ile	p.T239I	ENST00000371222	NM_002228.3	239	aCa/aTa																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65335013	65335013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	151	445	0	ENST00000342505.4:c.628G>A	p.Glu210Lys	p.E210K	ENST00000342505	NM_002227.2	210	Gaa/Aaa																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	71873191	71873191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1078	230	761	0	ENST00000357731.5:c.1003C>T	p.Leu335Phe	p.L335F	ENST00000357731	NM_173808.2	335	Ctt/Ttt																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243777029	243777029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	127	425	0	ENST00000263826.5:c.640T>C	p.Ser214Pro	p.S214P	ENST00000263826	NM_005465.4	214	Tcc/Ccc																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61149180	61149180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	109	379	0	ENST00000295025.8:c.1370C>A	p.Ala457Asp	p.A457D	ENST00000295025	NM_002908.2	457	gCt/gAt																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128046241	128046241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	151	357	0	ENST00000285398.2:c.1022C>T	p.Pro341Leu	p.P341L	ENST00000285398	NM_000122.1	341	cCc/cTc																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178095827	178095827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	149	413	2	ENST00000397062.3:c.1504C>T	p.Arg502Cys	p.R502C	ENST00000397062	NM_006164.4	502	Cgt/Tgt																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198270174	198270174	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	99	316	0	ENST00000335508.6:c.1262A>T	p.Tyr421Phe	p.Y421F	ENST00000335508	NM_012433.2	421	tAt/tTt																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209116221	209116221	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	167	544	0	ENST00000345146.2:c.55A>G	p.Thr19Ala	p.T19A	ENST00000345146	NM_005896.2	19	Aca/Gca																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212295705	212295705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	148	462	0	ENST00000342788.4:c.2608G>A	p.Gly870Arg	p.G870R	ENST00000342788	NM_005235.2	870	Gga/Aga																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12626101	12626101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	136	346	1	ENST00000251849.4:c.1859C>A	p.Ala620Asp	p.A620D	ENST00000251849	NM_002880.3	620	gCt/gAt																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49927994	49927994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	281	726	2	ENST00000296474.3:c.3734G>A	p.Arg1245His	p.R1245H	ENST00000296474	NM_002447.2	1245	cGc/cAc																																												NEWRECORD																																		
RYBP	0	MSKCC	GRCh37	3	72427613	72427613	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	115	411	0	ENST00000477973.2:c.875G>C	p.Glu293Gln	p.E293Q	ENST00000477973	NM_012234.5	293	Gag/Cag																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128204968	128204968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	162	438	0	ENST00000341105.2:c.473C>T	p.Ser158Phe	p.S158F	ENST00000341105	NM_032638.4	158	tCc/tTc																																												NEWRECORD																																		
FOXL2	0	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	240	563	0	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142266707	142266707	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	143	455	0	ENST00000350721.4:c.3217C>T	p.Gln1073Ter	p.Q1073*	ENST00000350721	NM_001184.3	1073	Caa/Taa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	53	195	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806582	1806582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	114	446	0	ENST00000260795.2:c.1298C>A	p.Ser433Tyr	p.S433Y	ENST00000260795		433	tCc/tAc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1807186	1807186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	178	461	0	ENST00000260795.2:c.1517C>T	p.Ala506Val	p.A506V	ENST00000260795		506	gCc/gTc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55573285	55573285	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	115	369	0	ENST00000288135.5:c.947T>G	p.Phe316Cys	p.F316C	ENST00000288135	NM_000222.2	316	tTc/tGc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55968136	55968136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	154	508	1	ENST00000263923.4:c.2194G>A	p.Glu732Lys	p.E732K	ENST00000263923	NM_002253.2	732	Gaa/Aaa																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467464	66467464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	132	386	0	ENST00000273854.3:c.805G>A	p.Asp269Asn	p.D269N	ENST00000273854	NM_004439.5	269	Gat/Aat																																												NEWRECORD																																		
FAM175A	0	MSKCC	GRCh37	4	84403325	84403325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	169	503	1	ENST00000321945.7:c.160G>A	p.Glu54Lys	p.E54K	ENST00000321945	NM_139076.2	54	Gaa/Aaa																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106196580	106196580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	115	417	0	ENST00000380013.4:c.4913C>T	p.Ser1638Leu	p.S1638L	ENST00000380013	NM_001127208.2	1638	tCa/tTa																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153244110	153244110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	112	496	0	ENST00000281708.4:c.2047G>A	p.Val683Met	p.V683M	ENST00000281708	NM_033632.3	683	Gtg/Atg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539564	187539565	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	246	386	0	ENST00000441802.2:c.8175_8176delinsTT	p.Arg2726Ter	p.R2726*	ENST00000441802	NM_005245.3	2725	atCCga/atTTga																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542864	187542864	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	85	350	0	ENST00000441802.2:c.4876G>C	p.Asp1626His	p.D1626H	ENST00000441802	NM_005245.3	1626	Gat/Cat																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187557881	187557881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	358	541	0	ENST00000441802.2:c.3830C>T	p.Thr1277Ile	p.T1277I	ENST00000441802	NM_005245.3	1277	aCc/aTc																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	233751	233751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	96	231	0	ENST00000264932.6:c.1055G>T	p.Arg352Leu	p.R352L	ENST00000264932	NM_004168.2	352	cGa/cTa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	113	358	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56189379	56189379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	183	489	1	ENST00000399503.3:c.4411C>A	p.Pro1471Thr	p.P1471T	ENST00000399503	NM_005921.1	1471	Cca/Aca																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67576768	67576768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	54	179	1	ENST00000274335.5:c.850G>A	p.Glu284Lys	p.E284K	ENST00000274335		284	Gaa/Aaa																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180056286	180056286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	184	571	0	ENST00000261937.6:c.958C>T	p.Arg320Trp	p.R320W	ENST00000261937	NM_182925.4	320	Cgg/Tgg																																												NEWRECORD																																		
HIST1H3C	0	MSKCC	GRCh37	6	26045806	26045806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1417	321	1045	0	ENST00000540144.1:c.168G>C	p.Gln56His	p.Q56H	ENST00000540144	NM_003531.2	56	caG/caC																																												NEWRECORD																																		
HIST1H3I	0	MSKCC	GRCh37	6	27839839	27839839	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1442	327	999	0	ENST00000328488.2:c.255C>A	p.Phe85Leu	p.F85L	ENST00000328488	NM_003533.2	85	ttC/ttA																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32181528	32181528	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	182	460	0	ENST00000375023.3:c.2257T>A	p.Cys753Ser	p.C753S	ENST00000375023	NM_004557.3	753	Tgc/Agc																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93956529	93956529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	216	718	0	ENST00000369303.4:c.2707C>T	p.Pro903Ser	p.P903S	ENST00000369303	NM_004440.3	903	Ccc/Tcc																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93956544	93956544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	212	756	0	ENST00000369303.4:c.2692A>G	p.Asn898Asp	p.N898D	ENST00000369303	NM_004440.3	898	Aat/Gat																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93956676	93956676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	220	711	0	ENST00000369303.4:c.2560C>T	p.Arg854Cys	p.R854C	ENST00000369303	NM_004440.3	854	Cgt/Tgt																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93965677	93965677	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	209	779	0	ENST00000369303.4:c.2251G>C	p.Asp751His	p.D751H	ENST00000369303	NM_004440.3	751	Gat/Cat																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94124437	94124437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	210	655	0	ENST00000369303.4:c.146C>T	p.Ser49Phe	p.S49F	ENST00000369303	NM_004440.3	49	tCc/tTc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117674261	117674261	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	152	579	0	ENST00000368508.3:c.4213A>C	p.Thr1405Pro	p.T1405P	ENST00000368508	NM_002944.2	1405	Aca/Cca																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117674321	117674321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	116	422	0	ENST00000368508.3:c.4153C>T	p.Leu1385Phe	p.L1385F	ENST00000368508	NM_002944.2	1385	Ctt/Ttt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117674323	117674323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	103	406	0	ENST00000368508.3:c.4151C>T	p.Thr1384Ile	p.T1384I	ENST00000368508	NM_002944.2	1384	aCc/aTc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117686303	117686303	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	154	461	0	ENST00000368508.3:c.3038T>C	p.Leu1013Ser	p.L1013S	ENST00000368508	NM_002944.2	1013	tTa/tCa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117710563	117710563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	159	363	0	ENST00000368508.3:c.1709C>T	p.Ser570Phe	p.S570F	ENST00000368508	NM_002944.2	570	tCt/tTt																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149983275	149983275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	128	371	0	ENST00000253339.5:c.2983C>T	p.Arg995Cys	p.R995C	ENST00000253339		995	Cgc/Tgc																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150004721	150004721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	181	438	0	ENST00000253339.5:c.1504C>T	p.Arg502Cys	p.R502C	ENST00000253339		502	Cgt/Tgt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099485	157099485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	166	422	0	ENST00000346085.5:c.422G>A	p.Gly141Asp	p.G141D	ENST00000346085	NM_020732.3	141	gGc/gAc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508517	106508517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	89	101	0	ENST00000359195.3:c.511G>A	p.Asp171Asn	p.D171N	ENST00000359195	NM_002649.2	171	Gat/Aat																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128846150	128846151	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	415	653	0	ENST00000249373.3:c.1080_1081delinsTT	p.His361Tyr	p.H361Y	ENST00000249373	NM_005631.4	360	ttCCac/ttTTac																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140494194	140494194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	56	550	0	ENST00000288602.6:c.1054G>C	p.Asp352His	p.D352H	ENST00000288602	NM_004333.4	352	Gat/Cat																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860416	151860416	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	358	584	0	ENST00000262189.6:c.10246A>G	p.Met3416Val	p.M3416V	ENST00000262189	NM_170606.2	3416	Atg/Gtg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152007140	152007140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	324	475	1	ENST00000262189.6:c.760C>T	p.Arg254Cys	p.R254C	ENST00000262189	NM_170606.2	254	Cgt/Tgt																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98238366	98238366	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	122	412	0	ENST00000331920.6:c.1678T>G	p.Phe560Val	p.F560V	ENST00000331920	NM_000264.3	560	Ttc/Gtc																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249930	110249930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	49	180	0	ENST00000374672.4:c.745A>G	p.Ser249Gly	p.S249G	ENST00000374672	NM_004235.4	249	Agc/Ggc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139411771	139411771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	228	567	0	ENST00000277541.6:c.1508G>A	p.Gly503Asp	p.G503D	ENST00000277541	NM_017617.3	503	gGc/gAc																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114905810	114905810	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1176	265	777	0	ENST00000543371.1:c.829A>G	p.Arg277Gly	p.R277G	ENST00000543371	NM_001198531.1	277	Aga/Gga																																												NEWRECORD																																		
EED	0	MSKCC	GRCh37	11	85975303	85975303	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	135	467	0	ENST00000263360.6:c.724G>A	p.Ala242Thr	p.A242T	ENST00000263360	NM_003797.3	242	Gct/Act																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100999392	100999392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	270	683	2	ENST00000325455.5:c.410C>T	p.Thr137Ile	p.T137I	ENST00000325455	NM_001202474.3	137	aCc/aTc																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1025908	1025908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	204	650	0	ENST00000358495.3:c.622T>C	p.Cys208Arg	p.C208R	ENST00000358495	NM_134424.2	208	Tgc/Cgc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49424198	49424198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	92	256	1	ENST00000301067.7:c.13864C>T	p.Pro4622Ser	p.P4622S	ENST00000301067	NM_003482.3	4622	Cca/Tca																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431198	49431198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	192	442	0	ENST00000301067.7:c.9941C>T	p.Ser3314Phe	p.S3314F	ENST00000301067	NM_003482.3	3314	tCc/tTc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431610	49431610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	151	436	0	ENST00000301067.7:c.9529G>A	p.Gly3177Arg	p.G3177R	ENST00000301067	NM_003482.3	3177	Ggg/Agg																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56490547	56490547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	122	438	0	ENST00000267101.3:c.2191G>C	p.Glu731Gln	p.E731Q	ENST00000267101	NM_001982.3	731	Gag/Cag																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57860117	57860117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	246	700	1	ENST00000228682.2:c.857A>G	p.Tyr286Cys	p.Y286C	ENST00000228682	NM_005269.2	286	tAc/tGc																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102813316	102813316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	156	496	1	ENST00000307046.8:c.373C>T	p.Arg125Cys	p.R125C	ENST00000307046	NM_001111285.1	125	Cgc/Tgc																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21562667	21562667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	74	161	0	ENST00000382592.4:c.1252C>T	p.Pro418Ser	p.P418S	ENST00000382592	NM_014572.2	418	Ccg/Tcg																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32930730	32930730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	80	350	0	ENST00000380152.3:c.7601C>T	p.Ala2534Val	p.A2534V	ENST00000380152		2534	gCg/gTg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	98	342	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435597	110435597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	44	113	0	ENST00000375856.3:c.2804C>T	p.Ala935Val	p.A935V	ENST00000375856	NM_003749.2	935	gCg/gTg																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061532	38061532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	123	237	0	ENST00000250448.2:c.457G>A	p.Ala153Thr	p.A153T	ENST00000250448	NM_004496.3	153	Gcg/Acg																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81609925	81609925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	134	315	0	ENST00000298171.2:c.1523C>T	p.Ser508Leu	p.S508L	ENST00000298171	NM_000369.2	508	tCg/tTg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41989087	41989087	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	241	837	2	ENST00000219905.7:c.1879C>T	p.Arg627Ter	p.R627*	ENST00000219905	NM_001164273.1	627	Cga/Tga																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42032342	42032342	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	275	807	0	ENST00000219905.7:c.4526C>G	p.Thr1509Ser	p.T1509S	ENST00000219905	NM_001164273.1	1509	aCt/aGt																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934945	9934945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	118	335	0	ENST00000330684.3:c.1345G>A	p.Gly449Arg	p.G449R	ENST00000330684	NM_001134407.1	449	Ggg/Agg																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23641508	23641509	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	153	548	1	ENST00000261584.4:c.1966_1967delinsTT	p.Pro656Leu	p.P656L	ENST00000261584	NM_024675.3	656	CCa/TTa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577105	7577106	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	185	544	0	ENST00000269305.4:c.832_833delCCinsTT	p.Pro278Phe	p.P278F	ENST00000269305	NM_001126112.2	278	CCt/TTt																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56492894	56492894	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	93	214	0	ENST00000407977.2:c.45G>A	p.Trp15Ter	p.W15*	ENST00000407977		15	tgG/tgA																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533778	63533778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	140	380	0	ENST00000307078.5:c.1376G>A	p.Arg459His	p.R459H	ENST00000307078	NM_004655.3	459	cGc/cAc																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63534420	63534421	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	114	357	0	ENST00000307078.5:c.1100_1101delinsTT	p.Pro367Leu	p.P367L	ENST00000307078	NM_004655.3	367	cCC/cTT																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120524	70120524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	113	308	0	ENST00000245479.2:c.1526C>T	p.Pro509Leu	p.P509L	ENST00000245479	NM_000346.3	509	cCt/cTt																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	724557	724557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	66	168	0	ENST00000314574.4:c.1499C>T	p.Ser500Phe	p.S500F	ENST00000314574	NM_005433.3	500	tCc/tTc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2191215	2191215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	228	584	0	ENST00000398665.3:c.469G>A	p.Asp157Asn	p.D157N	ENST00000398665	NM_032482.2	157	Gac/Aac																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5210526	5210526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	187	559	0	ENST00000357368.4:c.5441A>G	p.Asn1814Ser	p.N1814S	ENST00000357368	NM_002850.3	1814	aAc/aGc																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10247915	10247916	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	114	313	0	ENST00000340748.4:c.4286_4287delinsTT	p.Pro1429Leu	p.P1429L	ENST00000340748		1429	cCC/cTT																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610554	10610554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	174	382	0	ENST00000171111.5:c.156C>A	p.Phe52Leu	p.F52L	ENST00000171111	NM_203500.1	52	ttC/ttA																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11170811	11170811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	112	308	0	ENST00000344626.4:c.4859C>T	p.Ser1620Phe	p.S1620F	ENST00000344626	NM_003072.3	1620	tCc/tTc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15276756	15276756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	154	527	1	ENST00000263388.2:c.5509C>T	p.Arg1837Cys	p.R1837C	ENST00000263388	NM_000435.2	1837	Cgt/Tgt																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15278172	15278173	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	177	627	0	ENST00000263388.2:c.5249_5250delinsAA	p.Trp1750Ter	p.W1750*	ENST00000263388	NM_000435.2	1750	tGG/tAA																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15295830	15295830	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	149	413	0	ENST00000263388.2:c.2297G>A	p.Gly766Glu	p.G766E	ENST00000263388	NM_000435.2	766	gGa/gAa																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17952276	17952276	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	98	335	0	ENST00000458235.1:c.1064C>G	p.Ser355Cys	p.S355C	ENST00000458235	NM_000215.3	355	tCc/tGc																																												NEWRECORD																																		
MEF2B	0	MSKCC	GRCh37	19	19257848	19257848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	199	446	2	ENST00000162023.5:c.538C>T	p.Pro180Ser	p.P180S	ENST00000162023		180	Cca/Tca																																												NEWRECORD																																		
BBC3	0	MSKCC	GRCh37	19	47725141	47725142	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	177	419	0	ENST00000449228.1:c.602_603delinsTT	p.Thr201Ile	p.T201I	ENST00000449228	NM_001127240.2	201	aCC/aTT																																												NEWRECORD																																		
BBC3	0	MSKCC	GRCh37	19	47731464	47731464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	54	89	0	ENST00000449228.1:c.328C>T	p.Pro110Ser	p.P110S	ENST00000449228	NM_001127240.2	110	Ccg/Tcg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40877349	40877349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	95	251	0	ENST00000373198.4:c.2347G>A	p.Val783Met	p.V783M	ENST00000373198	NM_133170.3	783	Gtg/Atg																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48650833	48650833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	184	363	1	ENST00000376670.3:c.702G>A	p.Met234Ile	p.M234I	ENST00000376670	NM_002049.3	234	atG/atA																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37083760	37083763	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	GAAG	GAAG	A			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	124	530	0	ENST00000231790.2:c.1669_1672delinsA	p.Glu557_Glu558delinsLys	p.E557_E558delinsK	ENST00000231790	NM_000249.3	557	GAAGaa/Aaa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139395260	139395260	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	122	315	0	ENST00000277541.6:c.5678del	p.Gly1893AlafsTer88	p.G1893Afs*88	ENST00000277541	NM_017617.3	1893	gGc/gc																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	252	697	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	204	646	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49435725	49435727	+	frameshift_variant	Frame_Shift_Del	DEL	GGA	GGA	C			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	173	535	0	ENST00000301067.7:c.6156_6158delinsG	p.Pro2053SerfsTer3	p.P2053Sfs*3	ENST00000301067	NM_003482.3	2052	gtTCCa/gtGa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139399552	139399552	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	91	240	0	ENST00000277541.6:c.4591delC	p.Leu1531CysfsTer49	p.L1531Cfs*49	ENST00000277541	NM_017617.3	1531	Ctg/tg																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49444378	49444378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	80	375	0	ENST00000301067.7:c.2993del	p.Pro998LeufsTer2	p.P998Lfs*2	ENST00000301067	NM_003482.3	998	cCt/ct																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	83	461	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149449582	149449582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	69	356	0	ENST00000286301.3:c.1364C>A	p.Pro455His	p.P455H	ENST00000286301	NM_005211.3	455	cCt/cAt																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25470480	25470480	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	49	345	0	ENST00000264709.3:c.994G>T	p.Gly332Ter	p.G332*	ENST00000264709	NM_175629.2	332	Gga/Tga																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30143404	30143404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	16	119	0	ENST00000389048.3:c.122G>T	p.Arg41Leu	p.R41L	ENST00000389048	NM_004304.4	41	cGg/cTg																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61128200	61128200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	46	109	0	ENST00000295025.8:c.376G>T	p.Gly126Ter	p.G126*	ENST00000295025	NM_002908.2	126	Gga/Tga																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61145682	61145682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	58	280	0	ENST00000295025.8:c.794G>T	p.Arg265Ile	p.R265I	ENST00000295025	NM_002908.2	265	aGa/aTa																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198274712	198274712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	76	242	0	ENST00000335508.6:c.686C>A	p.Ser229Tyr	p.S229Y	ENST00000335508	NM_012433.2	229	tCc/tAc																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662133	227662133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	34	313	0	ENST00000305123.5:c.1322C>A	p.Ser441Tyr	p.S441Y	ENST00000305123	NM_005544.2	441	tCc/tAc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52443571	52443571	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	39	294	1	ENST00000460680.1:c.121G>T	p.Gly41Cys	p.G41C	ENST00000460680	NM_004656.3	41	Ggc/Tgc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55981462	55981462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	98	267	0	ENST00000263923.4:c.475G>T	p.Val159Leu	p.V159L	ENST00000263923	NM_002253.2	159	Gtg/Ttg																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176519785	176519785	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	57	351	0	ENST00000292408.4:c.1057G>T	p.Glu353Ter	p.E353*	ENST00000292408	NM_213647.1	353	Gag/Tag																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652251	36652251	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	49	233	0	ENST00000244741.5:c.373G>T	p.Glu125Ter	p.E125*	ENST00000244741	NM_000389.4	125	Gag/Tag																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94120364	94120364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	99	531	0	ENST00000369303.4:c.687G>T	p.Glu229Asp	p.E229D	ENST00000369303	NM_004440.3	229	gaG/gaT																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117630000	117630000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	32	302	0	ENST00000368508.3:c.6526A>G	p.Thr2176Ala	p.T2176A	ENST00000368508	NM_002944.2	2176	Aca/Gca																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157405902	157405902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	29	278	0	ENST00000346085.5:c.2144C>G	p.Pro715Arg	p.P715R	ENST00000346085	NM_020732.3	715	cCg/cGg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55272994	55272994	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	164	378	0	ENST00000275493.2:c.3317A>T	p.Gln1106Leu	p.Q1106L	ENST00000275493	NM_005228.3	1106	cAg/cTg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139391728	139391728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	18	303	0	ENST00000277541.6:c.6463G>T	p.Gly2155Cys	p.G2155C	ENST00000277541	NM_017617.3	2155	Ggc/Tgc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43604633	43604633	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	31	327	0	ENST00000355710.3:c.1218T>A	p.Ser406Arg	p.S406R	ENST00000355710	NM_020975.4	406	agT/agA																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	71	157	0	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366																																													NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18491387	18491387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	55	197	0	ENST00000266497.5:c.1300G>T	p.Val434Phe	p.V434F	ENST00000266497		434	Gtt/Ttt																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18691196	18691196	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	44	266	0	ENST00000266497.5:c.3307T>A	p.Tyr1103Asn	p.Y1103N	ENST00000266497		1103	Tat/Aat																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112526	115112526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	63	312	0	ENST00000257566.3:c.1214G>T	p.Arg405Leu	p.R405L	ENST00000257566	NM_016569.3	405	cGt/cTt																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121432205	121432205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	34	220	0	ENST00000257555.6:c.952C>A	p.His318Asn	p.H318N	ENST00000257555		318	Cac/Aac																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29008057	29008057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	59	226	0	ENST00000282397.4:c.712C>A	p.Arg238Ser	p.R238S	ENST00000282397	NM_002019.4	238	Cgc/Agc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29012474	29012474	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	59	194	1	ENST00000282397.4:c.397A>T	p.Arg133Ter	p.R133*	ENST00000282397	NM_002019.4	133	Aga/Tga																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88727529	88727529	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	39	197	0	ENST00000360948.2:c.250C>A	p.His84Asn	p.H84N	ENST00000360948	NM_001012338.2	84	Cac/Aac																																												NEWRECORD																																		
STAT5B	0	MSKCC	GRCh37	17	40369266	40369266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	108	545	0	ENST00000293328.3:c.1292G>T	p.Gly431Val	p.G431V	ENST00000293328	NM_012448.3	431	gGg/gTg																																												NEWRECORD																																		
CD79B	0	MSKCC	GRCh37	17	62007547	62007547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	73	409	0	ENST00000392795.3:c.320C>A	p.Thr107Asn	p.T107N	ENST00000392795	NM_001039933.1	107	aCc/aAc																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45374884	45374884	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	41	316	0	ENST00000262160.6:c.959A>T	p.Asn320Ile	p.N320I	ENST00000262160	NM_005901.5	320	aAc/aTc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610541	10610541	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	61	351	0	ENST00000171111.5:c.169G>T	p.Glu57Ter	p.E57*	ENST00000171111	NM_203500.1	57	Gag/Tag																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40710569	40710569	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	126	282	0	ENST00000373198.4:c.4282A>G	p.Ile1428Val	p.I1428V	ENST00000373198	NM_133170.3	1428	Atc/Gtc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40710600	40710600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	25	273	0	ENST00000373198.4:c.4251C>G	p.Ile1417Met	p.I1417M	ENST00000373198	NM_133170.3	1417	atC/atG																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36206809	36206809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	16	165	0	ENST00000300305.3:c.703G>A	p.Ala235Thr	p.A235T	ENST00000300305		235	Gcc/Acc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76889090	76889090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	74	508	0	ENST00000373344.5:c.4920G>T	p.Lys1640Asn	p.K1640N	ENST00000373344	NM_000489.3	1640	aaG/aaT																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76931795	76931795	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	87	332	0	ENST00000373344.5:c.3737-2A>T		p.X1246_splice	ENST00000373344	NM_000489.3	1246																																													NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123200096	123200096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	91	409	0	ENST00000218089.9:c.2168G>T	p.Gly723Val	p.G723V	ENST00000218089	NM_001042749.1	723	gGa/gTa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123220500	123220500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	125	464	0	ENST00000218089.9:c.3157G>T	p.Asp1053Tyr	p.D1053Y	ENST00000218089	NM_001042749.1	1053	Gat/Tat																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11141497	11141498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	57	349	0	ENST00000344626.4:c.3480dup	p.Leu1161AlafsTer15	p.L1161Afs*15	ENST00000344626	NM_003072.3	1158	-/G																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974689	21974689	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	48	315	0	ENST00000304494.5:c.138del	p.Arg47GlyfsTer6	p.R47Gfs*6	ENST00000304494	NM_000077.4	46	cgG/cg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974689	21974689	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	48	315	0	ENST00000304494.5:c.138del	p.Arg47GlyfsTer6	p.R47Gfs*6	ENST00000304494	NM_000077.4	46	cgG/cg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045683	47045684	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0003311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	19	297	0	ENST00000329236.7:c.2330_2331delinsTT	p.Gly777Val	p.G777V	ENST00000329236	NM_001204466.1	777	gGG/gTT																																												NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	159	367	1	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																												NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	128	351	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	137	336	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	231	552	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																												NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	203	641	1	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																												NEWRECORD																																		
DOT1L	84444	MSKCC	GRCh37	19	2216560	2216560	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777525091		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	111	461	0	ENST00000398665.3:c.2204C>T	p.Thr735Met	p.T735M	ENST00000398665	NM_032482.2	735	aCg/aTg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	105	384	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258817	16258817	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	183	618	0	ENST00000375759.3:c.6082A>G	p.Met2028Val	p.M2028V	ENST00000375759	NM_015001.2	2028	Atg/Gtg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175068	112175069	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	103	328	0	ENST00000257430.4:c.3778_3779del	p.Gln1260AspfsTer15	p.Q1260Dfs*15	ENST00000257430	NM_000038.5	1259	atACag/atag																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	111	387	0	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																												NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	174	529	3	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	260	676	4	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	95	382	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98270530	98270530	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	32	217	0	ENST00000331920.6:c.114delG	p.Leu39CysfsTer41	p.L39Cfs*41	ENST00000331920	NM_000264.3	38	ggG/gg																																												NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40375459	40375459	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1312	105	1184	0	ENST00000293328.3:c.491del	p.Lys164SerfsTer17	p.K164Sfs*17	ENST00000293328	NM_012448.3	164	aAg/ag																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11292579	11292579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	169	488	2	ENST00000361445.4:c.2428G>T	p.Gly810Cys	p.G810C	ENST00000361445	NM_004958.3	810	Ggc/Tgc																																												NEWRECORD																																		
BCL10	0	MSKCC	GRCh37	1	85741978	85741978	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1499	102	678	0	ENST00000370580.1:c.57+1G>A		p.X19_splice	ENST00000370580	NM_003921.4	19																																													NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120479966	120479966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	216	496	0	ENST00000256646.2:c.3461C>T	p.Ala1154Val	p.A1154V	ENST00000256646	NM_024408.3	1154	gCg/gTg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156843724	156843724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	306	602	1	ENST00000524377.1:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000524377	NM_002529.3	384	Gag/Aag																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47703538	47703538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	204	623	1	ENST00000233146.2:c.2038C>T	p.Arg680Ter	p.R680*	ENST00000233146	NM_000251.2	680	Cga/Tga																																												NEWRECORD																																		
PDCD1	0	MSKCC	GRCh37	2	242794355	242794355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	75	475	0	ENST00000334409.5:c.587C>G	p.Ala196Gly	p.A196G	ENST00000334409	NM_005018.2	196	gCa/gGa																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49412922	49412922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	68	825	0	ENST00000418115.1:c.101A>G	p.Tyr34Cys	p.Y34C	ENST00000418115	NM_001664.2	34	tAt/tGt																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52439181	52439181	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	35	269	0	ENST00000460680.1:c.1061T>G	p.Val354Gly	p.V354G	ENST00000460680	NM_004656.3	354	gTc/gGc																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71090533	71090533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	269	595	0	ENST00000318789.4:c.815A>G	p.Asn272Ser	p.N272S	ENST00000318789	NM_032682.5	272	aAc/aGc																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71090597	71090597	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	335	648	0	ENST00000318789.4:c.751A>G	p.Ser251Gly	p.S251G	ENST00000318789	NM_032682.5	251	Agt/Ggt																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55979624	55979624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	187	545	1	ENST00000263923.4:c.823C>T	p.Arg275Ter	p.R275*	ENST00000263923	NM_002253.2	275	Cga/Tga																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187510101	187510101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	116	433	0	ENST00000441802.2:c.13412C>T	p.Ala4471Val	p.A4471V	ENST00000441802	NM_005245.3	4471	gCg/gTg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1282650	1282650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	198	665	0	ENST00000310581.5:c.1663G>A	p.Glu555Lys	p.E555K	ENST00000310581	NM_198253.2	555	Gag/Aag																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149433887	149433887	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs202216061		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	77	350	0	ENST00000286301.3:c.2761C>T	p.Arg921Trp	p.R921W	ENST00000286301	NM_005211.3	921	Cgg/Tgg																																												NEWRECORD																																		
HIST1H2BD	0	MSKCC	GRCh37	6	26158654	26158654	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs140038730		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	13	47	0	ENST00000289316.2:c.257A>G	p.Lys86Arg	p.K86R	ENST00000289316	NM_138720.2	86	aAg/aGg																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29910692	29910692	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	229	506	2	ENST00000376809.5:c.232C>T	p.Gln78Ter	p.Q78*	ENST00000376809	NM_002116.7	78	Cag/Tag																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93967829	93967829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	151	734	1	ENST00000369303.4:c.2098G>A	p.Val700Ile	p.V700I	ENST00000369303	NM_004440.3	700	Gtt/Att																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38271516	38271516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	147	721	0	ENST00000425967.3:c.2305C>T	p.His769Tyr	p.H769Y	ENST00000425967	NM_001174067.1	769	Cat/Tat																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80412526	80412526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	304	502	1	ENST00000286548.4:c.515A>G	p.Tyr172Cys	p.Y172C	ENST00000286548	NM_002072.3	172	tAc/tGc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100468	8100468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	52	459	0	ENST00000346208.3:c.442C>A	p.Pro148Thr	p.P148T	ENST00000346208		148	Ccg/Acg																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63661981	63661981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	66	326	1	ENST00000279873.7:c.85C>T	p.Leu29Phe	p.L29F	ENST00000279873	NM_032199.2	29	Ctt/Ttt																																												NEWRECORD																																		
RPS6KB2	0	MSKCC	GRCh37	11	67196059	67196059	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	58	575	0	ENST00000312629.5:c.43A>G	p.Ser15Gly	p.S15G	ENST00000312629	NM_003952.2	15	Agc/Ggc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118375929	118375929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	65	445	0	ENST00000534358.1:c.9322A>G	p.Thr3108Ala	p.T3108A	ENST00000534358	NM_005933.3	3108	Acc/Gcc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46287273	46287273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	216	551	0	ENST00000334344.6:c.5218G>A	p.Ala1740Thr	p.A1740T	ENST00000334344	NM_152641.2	1740	Gca/Aca																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115109731	115109731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	213	519	0	ENST00000257566.3:c.2147C>T	p.Ala716Val	p.A716V	ENST00000257566	NM_016569.3	716	gCg/gTg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133201534	133201534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	147	566	0	ENST00000320574.5:c.6704A>G	p.Tyr2235Cys	p.Y2235C	ENST00000320574	NM_006231.2	2235	tAc/tGc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49033830	49033830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202031219		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	214	431	0	ENST00000267163.4:c.1967G>A	p.Arg656Gln	p.R656Q	ENST00000267163	NM_000321.2	656	cGg/cAg																																												NEWRECORD																																		
RAD51B	0	MSKCC	GRCh37	14	68352648	68352648	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	206	413	0	ENST00000487270.1:c.515T>C	p.Leu172Ser	p.L172S	ENST00000487270	NM_133509.3	172	tTg/tCg																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99467848	99467848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	192	638	0	ENST00000268035.6:c.2717A>G	p.Gln906Arg	p.Q906R	ENST00000268035	NM_000875.3	906	cAg/cGg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2115574	2115574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	147	527	1	ENST00000219476.3:c.1654G>A	p.Ala552Thr	p.A552T	ENST00000219476	NM_000548.3	552	Gca/Aca																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3778173	3778173	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	41	317	0	ENST00000262367.5:c.6875A>G	p.Gln2292Arg	p.Q2292R	ENST00000262367	NM_004380.2	2292	cAg/cGg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72992513	72992513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	293	896	1	ENST00000268489.5:c.1532C>A	p.Pro511His	p.P511H	ENST00000268489	NM_006885.3	511	cCt/cAt																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89346357	89346357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	105	614	0	ENST00000301030.4:c.6593G>T	p.Arg2198Leu	p.R2198L	ENST00000301030	NM_001256183.1	2198	cGg/cTg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89348151	89348151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	207	923	1	ENST00000301030.4:c.4799G>A	p.Arg1600Gln	p.R1600Q	ENST00000301030	NM_001256183.1	1600	cGg/cAg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89350245	89350245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	282	919	0	ENST00000301030.4:c.2705A>G	p.Glu902Gly	p.E902G	ENST00000301030	NM_001256183.1	902	gAg/gGg																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89857940	89857940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	146	414	0	ENST00000389301.3:c.1230G>T	p.Trp410Cys	p.W410C	ENST00000389301	NM_000135.2	410	tgG/tgT																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435491	56435491	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	211	516	0	ENST00000407977.2:c.1646A>G	p.His549Arg	p.H549R	ENST00000407977		549	cAc/cGc																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78867630	78867630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	174	578	2	ENST00000306801.3:c.2366G>A	p.Arg789His	p.R789H	ENST00000306801	NM_020761.2	789	cGc/cAc																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39623700	39623700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	215	504	0	ENST00000262039.4:c.2107T>C	p.Phe703Leu	p.F703L	ENST00000262039	NM_002647.2	703	Ttt/Ctt																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5222228	5222228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	131	469	0	ENST00000357368.4:c.3107C>T	p.Ser1036Leu	p.S1036L	ENST00000357368	NM_002850.3	1036	tCg/tTg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5245841	5245841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	72	604	1	ENST00000357368.4:c.934G>A	p.Val312Met	p.V312M	ENST00000357368	NM_002850.3	312	Gtg/Atg																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18278077	18278077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	75	592	0	ENST00000222254.8:c.1697A>G	p.Asp566Gly	p.D566G	ENST00000222254	NM_005027.3	566	gAc/gGc																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31022961	31022961	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	162	538	0	ENST00000375687.4:c.2446T>C	p.Ser816Pro	p.S816P	ENST00000375687	NM_015338.5	816	Tct/Cct																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24159023	24159023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	201	460	0	ENST00000263121.7:c.695C>T	p.Thr232Met	p.T232M	ENST00000263121	NM_003073.3	232	aCg/aTg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41573200	41573200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	31	406	0	ENST00000263253.7:c.5485C>T	p.Arg1829Cys	p.R1829C	ENST00000263253	NM_001429.3	1829	Cgc/Tgc																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48652558	48652558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	49	91	0	ENST00000376670.3:c.1229C>T	p.Pro410Leu	p.P410L	ENST00000376670	NM_002049.3	410	cCg/cTg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70342150	70342150	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	374	364	0	ENST00000374080.3:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000374080		401	cCg/cTg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32166916	32166916	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	51	183	2	ENST00000375023.3:c.4322del	p.Pro1441LeufsTer17	p.P1441Lfs*17	ENST00000375023	NM_004557.3	1441	cCt/ct																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178577	56178579	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	192	504	2	ENST00000399503.3:c.3560_3562del	p.Glu1187del	p.E1187del	ENST00000399503	NM_005921.1	1184	GAA/-																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2211795	2211795	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	68	732	1	ENST00000398665.3:c.1516del	p.Gln506SerfsTer51	p.Q506Sfs*51	ENST00000398665	NM_032482.2	504	aCc/ac																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41244596	41244596	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	72	560	0	ENST00000357654.3:c.2952delT	p.Ile986SerfsTer14	p.I986Sfs*14	ENST00000357654	NM_007294.3	984	ttT/tt																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39629562	39629562	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	218	543	2	ENST00000262039.4:c.2260del	p.Thr754GlnfsTer7	p.T754Qfs*7	ENST00000262039	NM_002647.2	752	acA/ac																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32914617	32914617	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	383	1039	0	ENST00000380152.3:c.6129delA	p.Gly2044AlafsTer7	p.G2044Afs*7	ENST00000380152		2042	cAa/ca																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99467855	99467856	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	262	622	0	ENST00000268035.6:c.2732_2733dupCT	p.Gly912LeufsTer26	p.G912Lfs*26	ENST00000268035	NM_000875.3	908	-/TC																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	213	391	2	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133219487	133219487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	172	574	0	ENST00000320574.5:c.4647del	p.Lys1550AsnfsTer12	p.K1550Nfs*12	ENST00000320574	NM_006231.2	1549	ccC/cc																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41743896	41743896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	183	601	1	ENST00000301178.4:c.836delC	p.Pro279GlnfsTer18	p.P279Qfs*18	ENST00000301178	NM_021913.4	277	gaC/ga																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152265522	152265522	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	125	360	0	ENST00000206249.3:c.975del	p.Ile326TyrfsTer17	p.I326Yfs*17	ENST00000206249	NM_000125.3	325	ccG/cc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808898	1808898	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	166	671	4	ENST00000260795.2:c.2334delC	p.Ser779AlafsTer41	p.S779Afs*41	ENST00000260795		777	aCc/ac																																												NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32163553	32163554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs777647776		P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	108	339	6	ENST00000375023.3:c.5672dup	p.Gly1892ArgfsTer24	p.G1892Rfs*24	ENST00000375023	NM_004557.3	1891	ggc/ggGc																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176719159	176719159	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	134	301	0	ENST00000439151.2:c.6463+1del		p.G2155fs	ENST00000439151	NM_022455.4	2155	Ggg/gg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49439880	49439881	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	217	676	0	ENST00000301067.7:c.4660_4661del	p.Val1554LeufsTer48	p.V1554Lfs*48	ENST00000301067	NM_003482.3	1554	GTc/c																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118380780	118380780	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	264	585	0	ENST00000534358.1:c.11022del	p.Phe3674LeufsTer23	p.F3674Lfs*23	ENST00000534358	NM_005933.3	3673	gTt/gt																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29910346	29910346	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	250	556	0	ENST00000376809.5:c.19delC	p.Arg7GlufsTer13	p.R7Efs*13	ENST00000376809	NM_002116.7	6	Ccc/cc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56487896	56487897	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	193	511	0	ENST00000267101.3:c.1628_1629del	p.Phe543CysfsTer3	p.F543Cfs*3	ENST00000267101	NM_001982.3	543	TTt/t																																												NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142266651	142266651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	238	490	1	ENST00000350721.4:c.3273del	p.Phe1091LeufsTer28	p.F1091Lfs*28	ENST00000350721	NM_001184.3	1091	ttT/tt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112154850	112154850	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	244	464	0	ENST00000257430.4:c.1124del	p.Gly375AlafsTer79	p.G375Afs*79	ENST00000257430	NM_000038.5	374	cGg/cg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1196	131	428	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	89	693	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	117	532	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1262	95	820	3	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	63	462	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	35	733	1	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																												NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128750945	128750945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	89	489	1	ENST00000377970.2:c.482C>T	p.Ser161Leu	p.S161L	ENST00000377970	NM_002467.4	161	tCa/tTa																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	57	389	1	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63554214	63554246	+	inframe_deletion	In_Frame_Del	DEL	CTGCGCCTGGTCAAACATGATGGAATCAATCTG	CTGCGCCTGGTCAAACATGATGGAATCAATCTG	-			P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	231	619	0	ENST00000307078.5:c.493_525del	p.Gln165_Gln175del	p.Q165_Q175del	ENST00000307078	NM_004655.3	165	CAGATTGATTCCATCATGTTTGACCAGGCGCAG/-																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119752	70119753	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	225	707	0	ENST00000245479.2:c.755dup	p.Lys253GlufsTer43	p.K253Efs*43	ENST00000245479	NM_000346.3	252	ctg/cTtg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47041428	47041429	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	101	379	0	ENST00000329236.7:c.1542dup	p.Asn515GlnfsTer35	p.N515Qfs*35	ENST00000329236	NM_001204466.1	513	gac/gaCc																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0013596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	118	141	1				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0013596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	878	454	2	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																												NEWRECORD																																		
RAC1	0	MSKCC	GRCh37	7	6439806	6439806	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	630	519	1	ENST00000356142.4:c.332A>T	p.Asn111Ile	p.N111I	ENST00000356142	NM_018890.3	111	aAt/aTt																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43609951	43609951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	231	897	0	ENST00000355710.3:c.1903C>T	p.Arg635Cys	p.R635C	ENST00000355710	NM_020975.4	635	Cgc/Tgc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28908189	28908189	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	293	567	0	ENST00000282397.4:c.2566C>G	p.Arg856Gly	p.R856G	ENST00000282397	NM_002019.4	856	Cgg/Ggg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89350427	89350427	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	439	872	1	ENST00000301030.4:c.2523G>A	p.Trp841Ter	p.W841*	ENST00000301030	NM_001256183.1	841	tgG/tgA																																												NEWRECORD																																		
MAP2K2	0	MSKCC	GRCh37	19	4102429	4102429	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	244	531	0	ENST00000262948.5:c.473T>A	p.Val158Glu	p.V158E	ENST00000262948	NM_030662.3	158	gTg/gAg																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15383892	15383892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	195	417	0	ENST00000263377.2:c.19C>T	p.Pro7Ser	p.P7S	ENST00000263377	NM_058243.2	7	Cct/Tct																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31022357	31022358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCAGACA			P-0013596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	150	364	0	ENST00000375687.4:c.1843_1849dup	p.Ile617SerfsTer4	p.I617Sfs*4	ENST00000375687	NM_015338.5	614	-/GCAGACA																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49725190	49725190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	67	178	0	ENST00000449682.2:c.235G>A	p.Asp79Asn	p.D79N	ENST00000449682	NM_020998.3	79	Gac/Aac																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8389278	8389278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	312	642	2	ENST00000356435.5:c.4340G>A	p.Arg1447Gln	p.R1447Q	ENST00000356435		1447	cGg/cAg																																												NEWRECORD																																		
CDKN2B	0	MSKCC	GRCh37	9	22006225	22006225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	147	259	0	ENST00000276925.6:c.178C>T	p.Arg60Cys	p.R60C	ENST00000276925	NM_004936.3	60	Cgc/Tgc																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0004120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	69	264	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	39	305	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	55	306	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41268766	41268766	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	81	449	0	ENST00000349496.5:c.1004A>T	p.Lys335Ile	p.K335I	ENST00000349496	NM_001904.3	335	aAa/aTa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	8	367	0	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65309760	65309760	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	20	344	0	ENST00000342505.4:c.2390A>G	p.Lys797Arg	p.K797R	ENST00000342505	NM_002227.2	797	aAg/aGg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	30	349	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40944375	40944375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	18	329	0	ENST00000373198.4:c.2127C>A	p.Ser709Arg	p.S709R	ENST00000373198	NM_133170.3	709	agC/agA																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173785	112173785	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	21	290	0	ENST00000257430.4:c.2496del	p.Ser833AlafsTer9	p.S833Afs*9	ENST00000257430	NM_000038.5	832	Ccc/cc																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	88	154	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112157690	112157690	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0007025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	174	266	1	ENST00000257430.4:c.1408+2T>A		p.X470_splice	ENST00000257430	NM_000038.5	470																																													NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11307902	11307902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	239	652	0	ENST00000361445.4:c.1090G>T	p.Asp364Tyr	p.D364Y	ENST00000361445	NM_004958.3	364	Gac/Tac																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16237703	16237703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	261	592	1	ENST00000375759.3:c.1150C>T	p.Arg384Trp	p.R384W	ENST00000375759	NM_015001.2	384	Cgg/Tgg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16259962	16259962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	294	571	0	ENST00000375759.3:c.7227G>T	p.Glu2409Asp	p.E2409D	ENST00000375759	NM_015001.2	2409	gaG/gaT																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27094291	27094291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	168	404	0	ENST00000324856.7:c.2999C>A	p.Ser1000Tyr	p.S1000Y	ENST00000324856	NM_006015.4	1000	tCt/tAt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105694	27105694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	179	586	2	ENST00000324856.7:c.5305C>A	p.Leu1769Ile	p.L1769I	ENST00000324856	NM_006015.4	1769	Cta/Ata																																												NEWRECORD																																		
STK40	0	MSKCC	GRCh37	1	36826842	36826842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	236	621	1	ENST00000373129.3:c.92G>T	p.Arg31Ile	p.R31I	ENST00000373129	NM_032017.1	31	aGa/aTa																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36941155	36941155	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs145623142		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	267	752	1	ENST00000361632.4:c.184C>A	p.Leu62Met	p.L62M	ENST00000361632		62	Ctg/Atg																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43805719	43805719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	78	571	0	ENST00000372470.3:c.775G>A	p.Glu259Lys	p.E259K	ENST00000372470	NM_005373.2	259	Gaa/Aaa																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43812274	43812274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	206	436	0	ENST00000372470.3:c.1139G>C	p.Gly380Ala	p.G380A	ENST00000372470	NM_005373.2	380	gGc/gCc																																												NEWRECORD																																		
MUTYH	0	MSKCC	GRCh37	1	45795032	45795032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	237	599	1	ENST00000372115.3:c.1554C>A	p.Phe518Leu	p.F518L	ENST00000372115	NM_001048171.1	518	ttC/ttA																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65300268	65300268	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	120	348	0	ENST00000342505.4:c.3442G>T	p.Gly1148Ter	p.G1148*	ENST00000342505	NM_002227.2	1148	Gga/Tga																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65310506	65310506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	277	568	2	ENST00000342505.4:c.2182G>A	p.Asp728Asn	p.D728N	ENST00000342505	NM_002227.2	728	Gac/Aac																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65316594	65316594	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	97	380	0	ENST00000342505.4:c.1649-1G>T		p.X550_splice	ENST00000342505	NM_002227.2	550																																													NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65321245	65321245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	173	435	0	ENST00000342505.4:c.1595G>A	p.Arg532His	p.R532H	ENST00000342505	NM_002227.2	532	cGc/cAc																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65334993	65334993	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	67	399	0	ENST00000342505.4:c.647+1G>T		p.X216_splice	ENST00000342505	NM_002227.2	216																																													NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65348959	65348959	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	46	288	0	ENST00000342505.4:c.205+1G>A		p.X69_splice	ENST00000342505	NM_002227.2	69																																													NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72163744	72163744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	215	697	0	ENST00000357731.5:c.614C>T	p.Ala205Val	p.A205V	ENST00000357731	NM_173808.2	205	gCg/gTg																																												NEWRECORD																																		
FAM46C	0	MSKCC	GRCh37	1	118166011	118166011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	175	463	0	ENST00000369448.3:c.521G>A	p.Arg174Gln	p.R174Q	ENST00000369448	NM_017709.3	174	cGg/cAg																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155870200	155870200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	214	567	0	ENST00000368323.3:c.639G>T	p.Lys213Asn	p.K213N	ENST00000368323	NM_006912.5	213	aaG/aaT																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156834571	156834571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	147	551	0	ENST00000524377.1:c.339C>A	p.Phe113Leu	p.F113L	ENST00000524377	NM_002529.3	113	ttC/ttA																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156849050	156849050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	230	492	1	ENST00000524377.1:c.1942C>A	p.His648Asn	p.H648N	ENST00000524377	NM_002529.3	648	Cac/Aac																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162688884	162688884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	162	504	0	ENST00000367921.3:c.31C>A	p.Leu11Met	p.L11M	ENST00000367921	NM_006182.2	11	Ctg/Atg																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162741963	162741963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	221	632	0	ENST00000367921.3:c.1654G>A	p.Asp552Asn	p.D552N	ENST00000367921	NM_006182.2	552	Gat/Aat																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162748475	162748475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	152	467	0	ENST00000367921.3:c.2389G>T	p.Val797Phe	p.V797F	ENST00000367921	NM_006182.2	797	Gtt/Ttt																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193099343	193099343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	166	389	0	ENST00000367435.3:c.277G>T	p.Asp93Tyr	p.D93Y	ENST00000367435	NM_024529.4	93	Gat/Tat																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193119509	193119509	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	68	440	1	ENST00000367435.3:c.904G>T	p.Glu302Ter	p.E302*	ENST00000367435	NM_024529.4	302	Gaa/Taa																																												NEWRECORD																																		
HIST3H3	0	MSKCC	GRCh37	1	228613019	228613019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	106	592	1	ENST00000366696.1:c.8G>A	p.Arg3Gln	p.R3Q	ENST00000366696	NM_003493.2	3	cGa/cAa																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243675668	243675668	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	152	419	0	ENST00000263826.5:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000263826	NM_005465.4	438	Gaa/Taa																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25965982	25965982	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62130126		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	231	560	0	ENST00000435504.4:c.3224G>A	p.Arg1075Gln	p.R1075Q	ENST00000435504		1075	cGg/cAg																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25994324	25994324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	233	590	0	ENST00000435504.4:c.489G>T	p.Lys163Asn	p.K163N	ENST00000435504		163	aaG/aaT																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26068357	26068357	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	128	421	0	ENST00000435504.4:c.133G>T	p.Glu45Ter	p.E45*	ENST00000435504		45	Gaa/Taa																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26068393	26068393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	190	467	0	ENST00000435504.4:c.97G>T	p.Glu33Ter	p.E33*	ENST00000435504		33	Gaa/Taa																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29446209	29446209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	220	414	0	ENST00000389048.3:c.3358C>T	p.Arg1120Trp	p.R1120W	ENST00000389048	NM_004304.4	1120	Cgg/Tgg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29917726	29917726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	164	478	1	ENST00000389048.3:c.942G>T	p.Glu314Asp	p.E314D	ENST00000389048	NM_004304.4	314	gaG/gaT																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	161	438	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61128137	61128137	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	174	309	0	ENST00000295025.8:c.313T>G	p.Leu105Val	p.L105V	ENST00000295025	NM_002908.2	105	Ttg/Gtg																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61144142	61144142	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	58	387	0	ENST00000295025.8:c.525T>G	p.Ile175Met	p.I175M	ENST00000295025	NM_002908.2	175	atT/atG																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	152	356	2	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61753622	61753622	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	131	419	0	ENST00000401558.2:c.161A>C	p.Lys54Thr	p.K54T	ENST00000401558	NM_003400.3	54	aAg/aCg																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128046948	128046948	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	199	543	0	ENST00000285398.2:c.787G>T	p.Glu263Ter	p.E263*	ENST00000285398	NM_000122.1	263	Gaa/Taa																																												NEWRECORD																																		
CXCR4	0	MSKCC	GRCh37	2	136873097	136873097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	347	761	6	ENST00000241393.3:c.401G>A	p.Arg134His	p.R134H	ENST00000241393	NM_003467.2	134	cGc/cAc																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158617565	158617565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	112	632	1	ENST00000263640.3:c.1091G>A	p.Ser364Asn	p.S364N	ENST00000263640	NM_001105.4	364	aGc/aAc																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158626972	158626972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	262	624	2	ENST00000263640.3:c.698C>T	p.Ala233Val	p.A233V	ENST00000263640	NM_001105.4	233	gCc/gTc																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178096592	178096592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	125	365	2	ENST00000397062.3:c.739C>A	p.Leu247Ile	p.L247I	ENST00000397062	NM_006164.4	247	Ctt/Att																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190682826	190682826	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	147	417	0	ENST00000441310.2:c.502G>T	p.Glu168Ter	p.E168*	ENST00000441310	NM_000534.4	168	Gaa/Taa																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190728575	190728575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	232	538	0	ENST00000441310.2:c.1963A>G	p.Lys655Glu	p.K655E	ENST00000441310	NM_000534.4	655	Aaa/Gaa																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198260916	198260916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	165	608	0	ENST00000335508.6:c.3403G>A	p.Glu1135Lys	p.E1135K	ENST00000335508	NM_012433.2	1135	Gaa/Aaa																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198263220	198263220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	179	486	0	ENST00000335508.6:c.3099G>T	p.Glu1033Asp	p.E1033D	ENST00000335508	NM_012433.2	1033	gaG/gaT																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198270010	198270010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	57	445	0	ENST00000335508.6:c.1426G>T	p.Asp476Tyr	p.D476Y	ENST00000335508	NM_012433.2	476	Gat/Tat																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202123091	202123091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	184	290	0	ENST00000358485.4:c.137G>T	p.Gly46Val	p.G46V	ENST00000358485	NM_001080125.1	46	gGa/gTa																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202131447	202131447	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	184	516	0	ENST00000358485.4:c.415A>C	p.Asn139His	p.N139H	ENST00000358485	NM_001080125.1	139	Aac/Cac																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149643	202149643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	209	576	0	ENST00000358485.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000358485	NM_001080125.1	362	Gac/Aac																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251606	212251606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	59	377	0	ENST00000342788.4:c.3453G>T	p.Met1151Ile	p.M1151I	ENST00000342788	NM_005235.2	1151	atG/atT																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251747	212251747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	89	427	0	ENST00000342788.4:c.3312C>A	p.Asp1104Glu	p.D1104E	ENST00000342788	NM_005235.2	1104	gaC/gaA																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251814	212251814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	47	387	0	ENST00000342788.4:c.3245G>T	p.Arg1082Ile	p.R1082I	ENST00000342788	NM_005235.2	1082	aGa/aTa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212286805	212286805	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	143	405	0	ENST00000342788.4:c.2891G>T	p.Arg964Ile	p.R964I	ENST00000342788	NM_005235.2	964	aGa/aTa																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220439839	220439839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	245	660	0	ENST00000243786.2:c.692G>A	p.Arg231Gln	p.R231Q	ENST00000243786	NM_002191.3	231	cGa/cAa																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227661897	227661897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	141	331	0	ENST00000305123.5:c.1558C>T	p.Arg520Trp	p.R520W	ENST00000305123	NM_005544.2	520	Cgg/Tgg																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12641652	12641652	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	40	341	0	ENST00000251849.4:c.989T>G	p.Ile330Ser	p.I330S	ENST00000251849	NM_002880.3	330	aTt/aGt																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47144859	47144859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	103	505	1	ENST00000409792.3:c.4894G>A	p.Glu1632Lys	p.E1632K	ENST00000409792	NM_014159.6	1632	Gaa/Aaa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47162485	47162485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	198	497	0	ENST00000409792.3:c.3641A>C	p.Asn1214Thr	p.N1214T	ENST00000409792	NM_014159.6	1214	aAt/aCt																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47163277	47163277	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149265978		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	182	620	1	ENST00000409792.3:c.2849G>A	p.Arg950His	p.R950H	ENST00000409792	NM_014159.6	950	cGt/cAt																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165678	47165678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	201	540	0	ENST00000409792.3:c.448C>A	p.His150Asn	p.H150N	ENST00000409792	NM_014159.6	150	Cat/Aat																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	160	540	0	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52696234	52696234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	66	563	0	ENST00000394830.3:c.443G>T	p.Arg148Ile	p.R148I	ENST00000394830	NM_018313.4	148	aGa/aTa																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	70008501	70008501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147148433		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	174	502	2	ENST00000352241.4:c.1091G>A	p.Arg364His	p.R364H	ENST00000352241	NM_198159.2	364	cGc/cAc																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71015074	71015074	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	73	547	0	ENST00000318789.4:c.1856A>G	p.Asp619Gly	p.D619G	ENST00000318789	NM_032682.5	619	gAc/gGc																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72873669	72873669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	174	404	1	ENST00000325599.8:c.633G>T	p.Gln211His	p.Q211H	ENST00000325599	NM_018130.2	211	caG/caT																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259649	89259649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	35	209	0	ENST00000336596.2:c.793G>T	p.Glu265Ter	p.E265*	ENST00000336596	NM_005233.5	265	Gaa/Taa																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89456518	89456518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	127	500	0	ENST00000336596.2:c.1694G>T	p.Gly565Val	p.G565V	ENST00000336596	NM_005233.5	565	gGg/gTg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89498484	89498484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	191	617	0	ENST00000336596.2:c.2456C>A	p.Ser819Tyr	p.S819Y	ENST00000336596	NM_005233.5	819	tCt/tAt																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134670708	134670708	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	156	480	0	ENST00000398015.3:c.619C>A	p.Pro207Thr	p.P207T	ENST00000398015	NM_004441.4	207	Cca/Aca																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138376574	138376574	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	198	572	1	ENST00000289153.2:c.2900T>A	p.Val967Asp	p.V967D	ENST00000289153	NM_006219.2	967	gTc/gAc																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138426112	138426112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	172	432	0	ENST00000289153.2:c.1419G>T	p.Leu473Phe	p.L473F	ENST00000289153	NM_006219.2	473	ttG/ttT																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	210	557	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142204013	142204013	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	159	506	2	ENST00000350721.4:c.6190C>A	p.Leu2064Ile	p.L2064I	ENST00000350721	NM_001184.3	2064	Ctc/Atc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142253951	142253951	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	203	492	0	ENST00000350721.4:c.3916A>C	p.Ser1306Arg	p.S1306R	ENST00000350721	NM_001184.3	1306	Agc/Cgc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142278247	142278247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	159	307	0	ENST00000350721.4:c.1578G>T	p.Lys526Asn	p.K526N	ENST00000350721	NM_001184.3	526	aaG/aaT																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178917594	178917594	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	179	447	0	ENST00000263967.3:c.469A>G	p.Asn157Asp	p.N157D	ENST00000263967	NM_006218.2	157	Aat/Gat																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186504354	186504354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	110	332	0	ENST00000323963.5:c.691G>T	p.Asp231Tyr	p.D231Y	ENST00000323963		231	Gat/Tat																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189584501	189584501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	68	474	0	ENST00000264731.3:c.797G>A	p.Arg266Gln	p.R266Q	ENST00000264731	NM_003722.4	266	cGa/cAa																																												NEWRECORD																																		
PHOX2B	0	MSKCC	GRCh37	4	41749374	41749374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	31	313	0	ENST00000226382.2:c.421C>T	p.Arg141Ter	p.R141*	ENST00000226382	NM_003924.3	141	Cga/Tga																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55133724	55133724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	158	523	0	ENST00000257290.5:c.937G>T	p.Gly313Cys	p.G313C	ENST00000257290	NM_006206.4	313	Ggt/Tgt																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55133884	55133884	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	146	459	0	ENST00000257290.5:c.1097A>C	p.Asp366Ala	p.D366A	ENST00000257290	NM_006206.4	366	gAt/gCt																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55138675	55138675	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	132	434	0	ENST00000257290.5:c.1352A>C	p.Lys451Thr	p.K451T	ENST00000257290	NM_006206.4	451	aAa/aCa																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55146497	55146497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	139	445	0	ENST00000257290.5:c.2171C>A	p.Ser724Tyr	p.S724Y	ENST00000257290	NM_006206.4	724	tCt/tAt																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55565863	55565863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	66	581	1	ENST00000288135.5:c.687C>A	p.Phe229Leu	p.F229L	ENST00000288135	NM_000222.2	229	ttC/ttA																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55948151	55948151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	195	518	0	ENST00000263923.4:c.3820G>T	p.Asp1274Tyr	p.D1274Y	ENST00000263923	NM_002253.2	1274	Gac/Tac																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55956201	55956201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	206	519	0	ENST00000263923.4:c.3114G>T	p.Glu1038Asp	p.E1038D	ENST00000263923	NM_002253.2	1038	gaG/gaT																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55968651	55968651	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149740758		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	157	480	0	ENST00000263923.4:c.2012G>A	p.Gly671Glu	p.G671E	ENST00000263923	NM_002253.2	671	gGa/gAa																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55976831	55976831	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	162	411	0	ENST00000263923.4:c.1081G>T	p.Glu361Ter	p.E361*	ENST00000263923	NM_002253.2	361	Gaa/Taa																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55980418	55980418	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs75079316		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	148	457	0	ENST00000263923.4:c.673G>T	p.Asp225Tyr	p.D225Y	ENST00000263923	NM_002253.2	225	Gat/Tat																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66189906	66189906	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149835568		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	146	491	0	ENST00000273854.3:c.3040G>A	p.Gly1014Ser	p.G1014S	ENST00000273854	NM_004439.5	1014	Ggt/Agt																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66280142	66280142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	36	349	0	ENST00000273854.3:c.1547C>T	p.Thr516Met	p.T516M	ENST00000273854	NM_004439.5	516	aCg/aTg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66509087	66509087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	128	374	0	ENST00000273854.3:c.240A>C	p.Lys80Asn	p.K80N	ENST00000273854	NM_004439.5	80	aaA/aaC																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66509097	66509097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	112	386	0	ENST00000273854.3:c.230C>T	p.Ala77Val	p.A77V	ENST00000273854	NM_004439.5	77	gCt/gTt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106157352	106157352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	171	496	0	ENST00000380013.4:c.2253G>T	p.Lys751Asn	p.K751N	ENST00000380013	NM_001127208.2	751	aaG/aaT																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106158014	106158014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	172	485	0	ENST00000380013.4:c.2915C>A	p.Ser972Tyr	p.S972Y	ENST00000380013	NM_001127208.2	972	tCt/tAt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106164011	106164011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	199	581	0	ENST00000380013.4:c.3521C>T	p.Ala1174Val	p.A1174V	ENST00000380013	NM_001127208.2	1174	gCt/gTt																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143324204	143324204	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	155	361	0	ENST00000262992.4:c.259A>C	p.Thr87Pro	p.T87P	ENST00000262992	NM_001101669.1	87	Aca/Cca																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153249457	153249457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	166	496	1	ENST00000281708.4:c.1321C>T	p.Arg441Trp	p.R441W	ENST00000281708	NM_033632.3	441	Cgg/Tgg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187510153	187510153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	246	675	0	ENST00000441802.2:c.13360G>A	p.Glu4454Lys	p.E4454K	ENST00000441802	NM_005245.3	4454	Gaa/Aaa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187527368	187527368	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	91	183	0	ENST00000441802.2:c.10207-1G>T		p.X3403_splice	ENST00000441802	NM_005245.3	3403																																													NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187531020	187531020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	225	535	0	ENST00000441802.2:c.10003T>C	p.Phe3335Leu	p.F3335L	ENST00000441802	NM_005245.3	3335	Ttc/Ctc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187532825	187532825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	225	490	1	ENST00000441802.2:c.9568G>T	p.Glu3190Ter	p.E3190*	ENST00000441802	NM_005245.3	3190	Gaa/Taa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539809	187539809	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	46	466	0	ENST00000441802.2:c.7931A>C	p.Glu2644Ala	p.E2644A	ENST00000441802	NM_005245.3	2644	gAg/gCg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539852	187539852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	173	435	2	ENST00000441802.2:c.7888G>A	p.Asp2630Asn	p.D2630N	ENST00000441802	NM_005245.3	2630	Gac/Aac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542531	187542531	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	114	631	0	ENST00000441802.2:c.5209A>C	p.Ile1737Leu	p.I1737L	ENST00000441802	NM_005245.3	1737	Ata/Cta																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542842	187542842	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	53	510	1	ENST00000441802.2:c.4898A>G	p.Tyr1633Cys	p.Y1633C	ENST00000441802	NM_005245.3	1633	tAt/tGt																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1293664	1293664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111952055		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	160	362	0	ENST00000310581.5:c.1337G>A	p.Arg446His	p.R446H	ENST00000310581	NM_198253.2	446	cGt/cAt																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35873655	35873655	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	125	567	0	ENST00000303115.3:c.611A>C	p.Lys204Thr	p.K204T	ENST00000303115	NM_002185.3	204	aAa/aCa																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876361	35876361	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	35	378	0	ENST00000303115.3:c.1153T>G	p.Ser385Ala	p.S385A	ENST00000303115	NM_002185.3	385	Tcc/Gcc																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876393	35876393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	135	390	2	ENST00000303115.3:c.1185G>T	p.Lys395Asn	p.K395N	ENST00000303115	NM_002185.3	395	aaG/aaT																																												NEWRECORD																																		
RICTOR	253260	MSKCC	GRCh37	5	38982073	38982073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	143	431	0	ENST00000357387.3:c.649G>A	p.Asp217Asn	p.D217N	ENST00000357387	NM_152756.3	217	Gat/Aat																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	39002645	39002645	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	107	377	0	ENST00000357387.3:c.384A>C	p.Leu128Phe	p.L128F	ENST00000357387	NM_152756.3	128	ttA/ttC																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178439	56178439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	49	536	1	ENST00000399503.3:c.3412G>T	p.Ala1138Ser	p.A1138S	ENST00000399503	NM_005921.1	1138	Gca/Tca																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	323	413	2	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173350	112173350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	167	571	0	ENST00000257430.4:c.2059C>A	p.Leu687Ile	p.L687I	ENST00000257430	NM_000038.5	687	Ctc/Atc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	128	393	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174236	112174236	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139773221		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	217	571	0	ENST00000257430.4:c.2945C>T	p.Ser982Leu	p.S982L	ENST00000257430	NM_000038.5	982	tCg/tTg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174802	112174802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201830995		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	166	476	0	ENST00000257430.4:c.3511C>T	p.Arg1171Cys	p.R1171C	ENST00000257430	NM_000038.5	1171	Cgt/Tgt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174959	112174959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	158	426	0	ENST00000257430.4:c.3668C>A	p.Ser1223Tyr	p.S1223Y	ENST00000257430	NM_000038.5	1223	tCt/tAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176020	112176020	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	149	401	0	ENST00000257430.4:c.4729G>T	p.Glu1577Ter	p.E1577*	ENST00000257430	NM_000038.5	1577	Gaa/Taa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176706	112176706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	166	458	0	ENST00000257430.4:c.5415C>A	p.Phe1805Leu	p.F1805L	ENST00000257430	NM_000038.5	1805	ttC/ttA																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177203	112177203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	96	415	0	ENST00000257430.4:c.5912C>A	p.Ser1971Tyr	p.S1971Y	ENST00000257430	NM_000038.5	1971	tCt/tAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112178606	112178606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	169	483	1	ENST00000257430.4:c.7315C>T	p.Arg2439Cys	p.R2439C	ENST00000257430	NM_000038.5	2439	Cgc/Tgc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112179516	112179516	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	194	514	0	ENST00000257430.4:c.8225A>G	p.Gln2742Arg	p.Q2742R	ENST00000257430	NM_000038.5	2742	cAa/cGa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112179520	112179520	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	171	509	0	ENST00000257430.4:c.8229T>G	p.Asn2743Lys	p.N2743K	ENST00000257430	NM_000038.5	2743	aaT/aaG																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131924411	131924411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	145	417	0	ENST00000265335.6:c.1084G>T	p.Glu362Ter	p.E362*	ENST00000265335		362	Gaa/Taa																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131939134	131939134	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	151	640	0	ENST00000265335.6:c.2350A>C	p.Ser784Arg	p.S784R	ENST00000265335		784	Agt/Cgt																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149495372	149495372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146614144		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	180	435	0	ENST00000261799.4:c.3275C>T	p.Ser1092Leu	p.S1092L	ENST00000261799	NM_002609.3	1092	tCg/tTg																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637295	176637295	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201702515		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	186	494	0	ENST00000439151.2:c.1895G>A	p.Arg632Gln	p.R632Q	ENST00000439151	NM_022455.4	632	cGa/cAa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176673753	176673753	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	276	601	0	ENST00000439151.2:c.4453A>C	p.Lys1485Gln	p.K1485Q	ENST00000439151	NM_022455.4	1485	Aaa/Caa																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20483060	20483060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	182	520	1	ENST00000346618.3:c.793G>A	p.Glu265Lys	p.E265K	ENST00000346618	NM_001949.4	265	Gag/Aag																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056189	26056189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	53	459	0	ENST00000343677.2:c.468G>T	p.Lys156Asn	p.K156N	ENST00000343677	NM_005319.3	156	aaG/aaT																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30671212	30671212	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1373	106	709	1	ENST00000376406.3:c.5665G>T	p.Glu1889Ter	p.E1889*	ENST00000376406	NM_014641.2	1889	Gaa/Taa																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30671985	30671985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1370	75	669	0	ENST00000376406.3:c.4975G>T	p.Asp1659Tyr	p.D1659Y	ENST00000376406	NM_014641.2	1659	Gat/Tat																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30675596	30675596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1247	311	879	0	ENST00000376406.3:c.2760G>T	p.Glu920Asp	p.E920D	ENST00000376406	NM_014641.2	920	gaG/gaT																																												NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32166773	32166773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1231739465		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	232	519	1	ENST00000375023.3:c.4465C>T	p.Arg1489Ter	p.R1489*	ENST00000375023	NM_004557.3	1489	Cga/Tga																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32172162	32172162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	200	383	0	ENST00000375023.3:c.2870C>T	p.Ala957Val	p.A957V	ENST00000375023	NM_004557.3	957	gCc/gTc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32178537	32178537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	159	435	0	ENST00000375023.3:c.2857C>A	p.Leu953Ile	p.L953I	ENST00000375023	NM_004557.3	953	Ctc/Atc																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93973599	93973599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	257	652	2	ENST00000369303.4:c.1777G>A	p.Asp593Asn	p.D593N	ENST00000369303	NM_004440.3	593	Gat/Aat																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553781	106553781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	75	430	0	ENST00000369096.4:c.1746G>T	p.Lys582Asn	p.K582N	ENST00000369096	NM_001198.3	582	aaG/aaT																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117609933	117609933	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	88	537	0	ENST00000368508.3:c.6766G>T	p.Asp2256Tyr	p.D2256Y	ENST00000368508	NM_002944.2	2256	Gat/Tat																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117631345	117631345	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	183	586	0	ENST00000368508.3:c.6333A>C	p.Lys2111Asn	p.K2111N	ENST00000368508	NM_002944.2	2111	aaA/aaC																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117642486	117642486	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	231	652	0	ENST00000368508.3:c.5713G>T	p.Glu1905Ter	p.E1905*	ENST00000368508	NM_002944.2	1905	Gag/Tag																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117662397	117662397	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	160	487	0	ENST00000368508.3:c.4980G>T	p.Glu1660Asp	p.E1660D	ENST00000368508	NM_002944.2	1660	gaG/gaT																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117687329	117687329	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	211	570	0	ENST00000368508.3:c.2722G>T	p.Glu908Ter	p.E908*	ENST00000368508	NM_002944.2	908	Gaa/Taa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117706977	117706977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	212	510	1	ENST00000368508.3:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000368508	NM_002944.2	725	Gac/Aac																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117715410	117715410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	202	559	0	ENST00000368508.3:c.1079G>T	p.Arg360Ile	p.R360I	ENST00000368508	NM_002944.2	360	aGa/aTa																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137519560	137519560	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	76	415	0	ENST00000367739.4:c.1078G>T	p.Glu360Ter	p.E360*	ENST00000367739	NM_000416.2	360	Gaa/Taa																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137528188	137528188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	147	448	0	ENST00000367739.4:c.112G>T	p.Glu38Ter	p.E38*	ENST00000367739	NM_000416.2	38	Gaa/Taa																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138196847	138196847	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	75	481	0	ENST00000237289.4:c.509A>C	p.Asn170Thr	p.N170T	ENST00000237289	NM_001270507.1	170	aAt/aCt																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138199594	138199594	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	81	351	0	ENST00000237289.4:c.1012G>T	p.Glu338Ter	p.E338*	ENST00000237289	NM_001270507.1	338	Gaa/Taa																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138200479	138200479	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	127	295	0	ENST00000237289.4:c.1897G>T	p.Glu633Ter	p.E633*	ENST00000237289	NM_001270507.1	633	Gaa/Taa																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150005269	150005269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	145	543	2	ENST00000253339.5:c.956G>A	p.Gly319Asp	p.G319D	ENST00000253339		319	gGc/gAc																																												NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152265313	152265313	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	106	462	0	ENST00000206249.3:c.766C>T	p.Arg256Ter	p.R256*	ENST00000206249	NM_000125.3	256	Cga/Tga																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152415580	152415580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	83	626	0	ENST00000206249.3:c.1430G>A	p.Arg477Gln	p.R477Q	ENST00000206249	NM_000125.3	477	cGa/cAa																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162683734	162683734	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	83	436	0	ENST00000366898.1:c.235G>T	p.Glu79Ter	p.E79*	ENST00000366898	NM_004562.2	79	Gaa/Taa																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2949715	2949715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	238	651	2	ENST00000396946.4:c.3229C>T	p.Arg1077Trp	p.R1077W	ENST00000396946	NM_032415.4	1077	Cgg/Tgg																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6026643	6026643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	240	553	0	ENST00000265849.7:c.1753C>A	p.Leu585Ile	p.L585I	ENST00000265849	NM_000535.5	585	Ctt/Att																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6029548	6029548	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	174	480	0	ENST00000265849.7:c.1027A>T	p.Ile343Phe	p.I343F	ENST00000265849	NM_000535.5	343	Att/Ttt																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	14026296	14026296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	99	316	0	ENST00000405192.2:c.148C>A	p.Leu50Ile	p.L50I	ENST00000405192	NM_001163147.1	50	Cta/Ata																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729535	41729535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1467	106	743	0	ENST00000242208.4:c.994G>A	p.Asp332Asn	p.D332N	ENST00000242208	NM_002192.2	332	Gac/Aac																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81358932	81358932	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	115	440	0	ENST00000222390.5:c.1029T>A	p.Asn343Lys	p.N343K	ENST00000222390	NM_000601.4	343	aaT/aaA																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509045	106509045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	182	437	0	ENST00000359195.3:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000359195	NM_002649.2	347	Gag/Aag																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106545740	106545740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	177	592	1	ENST00000359195.3:c.3217G>A	p.Glu1073Lys	p.E1073K	ENST00000359195	NM_002649.2	1073	Gaa/Aaa																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140500207	140500207	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	168	458	0	ENST00000288602.6:c.935T>C	p.Leu312Pro	p.L312P	ENST00000288602	NM_004333.4	312	cTa/cCa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151859941	151859941	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	173	541	0	ENST00000262189.6:c.10721C>A	p.Ser3574Tyr	p.S3574Y	ENST00000262189	NM_170606.2	3574	tCt/tAt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151873309	151873309	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145953124		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	201	457	1	ENST00000262189.6:c.9229C>T	p.Arg3077Cys	p.R3077C	ENST00000262189	NM_170606.2	3077	Cgt/Tgt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151873626	151873626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	41	369	0	ENST00000262189.6:c.8912C>A	p.Ser2971Tyr	p.S2971Y	ENST00000262189	NM_170606.2	2971	tCt/tAt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874046	151874046	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	208	628	2	ENST00000262189.6:c.8492C>A	p.Ser2831Tyr	p.S2831Y	ENST00000262189	NM_170606.2	2831	tCt/tAt																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38279458	38279458	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	124	378	0	ENST00000425967.3:c.1031C>T	p.Thr344Ile	p.T344I	ENST00000425967	NM_001174067.1	344	aCt/aTt																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90971022	90971022	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	201	491	0	ENST00000265433.3:c.1055T>G	p.Leu352Arg	p.L352R	ENST00000265433	NM_002485.4	352	cTa/cGa																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117866702	117866702	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	353	496	1	ENST00000297338.2:c.943G>T	p.Glu315Ter	p.E315*	ENST00000297338	NM_006265.2	315	Gaa/Taa																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117875450	117875450	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	259	737	0	ENST00000297338.2:c.193C>T	p.Arg65Ter	p.R65*	ENST00000297338	NM_006265.2	65	Cga/Tga																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8436600	8436600	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	50	495	1	ENST00000356435.5:c.4078G>T	p.Glu1360Ter	p.E1360*	ENST00000356435		1360	Gaa/Taa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8521481	8521481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	157	511	1	ENST00000356435.5:c.757G>A	p.Val253Ile	p.V253I	ENST00000356435		253	Gtt/Att																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8528711	8528711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	65	514	0	ENST00000356435.5:c.421C>T	p.Arg141Cys	p.R141C	ENST00000356435		141	Cgc/Tgc																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80343439	80343439	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	140	295	0	ENST00000286548.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000286548	NM_002072.3	294	Gaa/Taa																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101908829	101908829	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200657153		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	175	498	0	ENST00000374994.4:c.1193G>A	p.Arg398His	p.R398H	ENST00000374994	NM_004612.2	398	cGt/cAt																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101908877	101908877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	149	480	0	ENST00000374994.4:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000374994	NM_004612.2	414	cGa/cAa																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135781416	135781416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1249	359	820	1	ENST00000298552.3:c.1549C>T	p.Arg517Trp	p.R517W	ENST00000298552	NM_001162426.1	517	Cgg/Tgg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115815	8115815	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	264	624	1	ENST00000346208.3:c.1161G>T	p.Lys387Asn	p.K387N	ENST00000346208		387	aaG/aaT																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63829499	63829499	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	128	411	0	ENST00000279873.7:c.1142T>G	p.Leu381Ter	p.L381*	ENST00000279873	NM_032199.2	381	tTa/tGa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333080	70333080	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	199	558	0	ENST00000373644.4:c.985T>C	p.Phe329Leu	p.F329L	ENST00000373644	NM_030625.2	329	Ttc/Ctc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333863	70333863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	154	464	1	ENST00000373644.4:c.1768C>T	p.Arg590Ter	p.R590*	ENST00000373644	NM_030625.2	590	Cga/Tga																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70404693	70404693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	91	479	0	ENST00000373644.4:c.2207C>T	p.Ser736Leu	p.S736L	ENST00000373644	NM_030625.2	736	tCg/tTg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70404862	70404862	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	135	429	0	ENST00000373644.4:c.2376A>C	p.Lys792Asn	p.K792N	ENST00000373644	NM_030625.2	792	aaA/aaC																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70405080	70405080	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	220	574	0	ENST00000373644.4:c.2594A>C	p.Lys865Thr	p.K865T	ENST00000373644	NM_030625.2	865	aAa/aCa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70405349	70405349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	175	476	0	ENST00000373644.4:c.2863C>T	p.His955Tyr	p.H955Y	ENST00000373644	NM_030625.2	955	Cac/Tac																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70411602	70411602	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	153	420	0	ENST00000373644.4:c.4277-1G>T		p.X1426_splice	ENST00000373644	NM_030625.2	1426																																													NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89685311	89685311	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	60	268	0	ENST00000371953.3:c.206A>C	p.Asn69Thr	p.N69T	ENST00000371953	NM_000314.4	69	aAt/aCt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720711	89720711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	15	51	0	ENST00000371953.3:c.862G>T	p.Glu288Ter	p.E288*	ENST00000371953	NM_000314.4	288	Gaa/Taa																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123239508	123239508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1499	91	890	1	ENST00000358487.5:c.2329G>A	p.Glu777Lys	p.E777K	ENST00000358487	NM_000141.4	777	Gaa/Aaa																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123247555	123247555	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	236	504	0	ENST00000358487.5:c.1936G>T	p.Gly646Ter	p.G646*	ENST00000358487	NM_000141.4	646	Gga/Tga																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123310821	123310821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	209	558	0	ENST00000358487.5:c.607C>T	p.Arg203Cys	p.R203C	ENST00000358487	NM_000141.4	203	Cgc/Tgc																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17742934	17742934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	27	333	1	ENST00000250003.3:c.842G>A	p.Arg281His	p.R281H	ENST00000250003	NM_002478.4	281	cGc/cAc																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64573813	64573813	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139936447		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	185	420	1	ENST00000337652.1:c.955C>T	p.Arg319Trp	p.R319W	ENST00000337652	NM_130803.2	319	Cgg/Tgg																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77047231	77047231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	170	578	2	ENST00000356341.3:c.1313G>A	p.Arg438Gln	p.R438Q	ENST00000356341	NM_002576.4	438	cGa/cAa																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77085386	77085386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	213	511	0	ENST00000356341.3:c.464C>A	p.Ser155Tyr	p.S155Y	ENST00000356341	NM_002576.4	155	tCt/tAt																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94170371	94170371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	189	420	1	ENST00000323929.3:c.1898G>A	p.Arg633Gln	p.R633Q	ENST00000323929	NM_005591.3	633	cGa/cAa																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94192696	94192696	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	152	355	0	ENST00000323929.3:c.1378G>T	p.Glu460Ter	p.E460*	ENST00000323929	NM_005591.3	460	Gaa/Taa																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94224018	94224018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	200	497	0	ENST00000323929.3:c.134G>T	p.Arg45Ile	p.R45I	ENST00000323929	NM_005591.3	45	aGa/aTa																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100933252	100933252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	271	780	2	ENST00000325455.5:c.2138C>A	p.Ser713Tyr	p.S713Y	ENST00000325455	NM_001202474.3	713	tCt/tAt																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100933270	100933270	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	274	793	0	ENST00000325455.5:c.2120A>C	p.Lys707Thr	p.K707T	ENST00000325455	NM_001202474.3	707	aAa/aCa																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100996829	100996829	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	229	679	0	ENST00000325455.5:c.1698T>G	p.Ile566Met	p.I566M	ENST00000325455	NM_001202474.3	566	atT/atG																																												NEWRECORD																																		
YAP1	0	MSKCC	GRCh37	11	102056798	102056798	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	195	541	0	ENST00000282441.5:c.738T>G	p.Ile246Met	p.I246M	ENST00000282441	NM_001130145.2	246	atT/atG																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102201936	102201936	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1423	327	930	2	ENST00000263464.3:c.1288G>T	p.Glu430Ter	p.E430*	ENST00000263464	NM_001165.4	430	Gag/Tag																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	187	497	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108122668	108122668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	164	518	0	ENST00000278616.4:c.1712C>A	p.Ser571Tyr	p.S571Y	ENST00000278616	NM_000051.3	571	tCt/tAt																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108124599	108124599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	169	489	0	ENST00000278616.4:c.1957C>A	p.Leu653Ile	p.L653I	ENST00000278616	NM_000051.3	653	Ctt/Att																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108196197	108196197	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	185	452	0	ENST00000278616.4:c.6733G>T	p.Glu2245Ter	p.E2245*	ENST00000278616	NM_000051.3	2245	Gaa/Taa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108201008	108201008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	178	492	0	ENST00000278616.4:c.7375C>T	p.Arg2459Cys	p.R2459C	ENST00000278616	NM_000051.3	2459	Cgt/Tgt																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108205711	108205711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	120	330	0	ENST00000278616.4:c.8026G>T	p.Glu2676Ter	p.E2676*	ENST00000278616	NM_000051.3	2676	Gaa/Taa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118342539	118342539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	218	661	1	ENST00000534358.1:c.665G>T	p.Arg222Ile	p.R222I	ENST00000534358	NM_005933.3	222	aGa/aTa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118373664	118373664	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	60	534	0	ENST00000534358.1:c.7057T>G	p.Ser2353Ala	p.S2353A	ENST00000534358	NM_005933.3	2353	Tcc/Gcc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118373689	118373689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	203	505	2	ENST00000534358.1:c.7082C>T	p.Ser2361Leu	p.S2361L	ENST00000534358	NM_005933.3	2361	tCg/tTg																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118376455	118376455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	165	455	1	ENST00000534358.1:c.9848G>T	p.Arg3283Leu	p.R3283L	ENST00000534358	NM_005933.3	3283	cGa/cTa																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119169238	119169238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	91	301	0	ENST00000264033.4:c.2422G>T	p.Asp808Tyr	p.D808Y	ENST00000264033	NM_005188.3	808	Gat/Tat																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	431665	431665	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	214	483	0	ENST00000399788.2:c.2344C>T	p.Arg782Ter	p.R782*	ENST00000399788	NM_001042603.1	782	Cga/Tga																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1023606	1023606	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	249	535	0	ENST00000358495.3:c.958G>T	p.Glu320Ter	p.E320*	ENST00000358495	NM_134424.2	320	Gaa/Taa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18650557	18650557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	147	498	0	ENST00000266497.5:c.2768G>A	p.Gly923Glu	p.G923E	ENST00000266497		923	gGa/gAa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18658375	18658375	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	143	472	0	ENST00000266497.5:c.3180A>C	p.Gln1060His	p.Q1060H	ENST00000266497		1060	caA/caC																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18699296	18699296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	175	557	0	ENST00000266497.5:c.3397G>T	p.Asp1133Tyr	p.D1133Y	ENST00000266497		1133	Gac/Tac																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	161	388	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246026	46246026	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	151	563	0	ENST00000334344.6:c.4120A>G	p.Lys1374Glu	p.K1374E	ENST00000334344	NM_152641.2	1374	Aaa/Gaa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49425896	49425896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	178	552	1	ENST00000301067.7:c.12592C>T	p.Arg4198Ter	p.R4198*	ENST00000301067	NM_003482.3	4198	Cga/Tga																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426198	49426198	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	113	369	0	ENST00000301067.7:c.12290T>G	p.Leu4097Arg	p.L4097R	ENST00000301067	NM_003482.3	4097	cTt/cGt																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57863296	57863296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1321	110	800	2	ENST00000228682.2:c.1391G>T	p.Gly464Val	p.G464V	ENST00000228682	NM_005269.2	464	gGt/gTt																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57864647	57864647	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	216	855	0	ENST00000228682.2:c.2124A>C	p.Glu708Asp	p.E708D	ENST00000228682	NM_005269.2	708	gaA/gaC																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	216	530	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133256623	133256623	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	207	505	2	ENST00000320574.5:c.340C>T	p.Arg114Ter	p.R114*	ENST00000320574	NM_006231.2	114	Cga/Tga																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28601301	28601301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	203	584	0	ENST00000241453.7:c.2131C>A	p.His711Asn	p.H711N	ENST00000241453	NM_004119.2	711	Cac/Aac																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28601361	28601361	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	147	471	0	ENST00000241453.7:c.2071T>G	p.Phe691Val	p.F691V	ENST00000241453	NM_004119.2	691	Ttt/Gtt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32912484	32912484	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1279	129	760	0	ENST00000380152.3:c.3992C>A	p.Ser1331Tyr	p.S1331Y	ENST00000380152		1331	tCt/tAt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32912525	32912525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1362	81	724	1	ENST00000380152.3:c.4033G>T	p.Asp1345Tyr	p.D1345Y	ENST00000380152		1345	Gat/Tat																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32915255	32915255	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	289	805	0	ENST00000380152.3:c.6763A>G	p.Thr2255Ala	p.T2255A	ENST00000380152		2255	Aca/Gca																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32953964	32953964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	112	438	0	ENST00000380152.3:c.9031C>A	p.Leu3011Ile	p.L3011I	ENST00000380152		3011	Ctt/Att																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48881438	48881438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	150	410	0	ENST00000267163.4:c.160G>A	p.Glu54Lys	p.E54K	ENST00000267163	NM_000321.2	54	Gaa/Aaa																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48939054	48939054	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	91	402	0	ENST00000267163.4:c.886T>G	p.Phe296Val	p.F296V	ENST00000267163	NM_000321.2	296	Ttt/Gtt																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49033829	49033829	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142509759		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	139	441	1	ENST00000267163.4:c.1966C>T	p.Arg656Trp	p.R656W	ENST00000267163	NM_000321.2	656	Cgg/Tgg																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	224	498	0	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73351596	73351596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	235	472	0	ENST00000377767.4:c.616G>A	p.Glu206Lys	p.E206K	ENST00000377767	NM_014953.3	206	Gaa/Aaa																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81609467	81609467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	205	654	0	ENST00000298171.2:c.1065C>A	p.Phe355Leu	p.F355L	ENST00000298171	NM_000369.2	355	ttC/ttA																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95557672	95557672	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	126	422	0	ENST00000343455.3:c.5395G>T	p.Glu1799Ter	p.E1799*	ENST00000343455	NM_177438.2	1799	Gaa/Taa																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95562462	95562462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	41	413	1	ENST00000343455.3:c.4795C>T	p.Arg1599Trp	p.R1599W	ENST00000343455	NM_177438.2	1599	Cgg/Tgg																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95577679	95577679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	187	670	0	ENST00000343455.3:c.2231A>G	p.Lys744Arg	p.K744R	ENST00000343455	NM_177438.2	744	aAa/aGa																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95582819	95582819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	117	347	0	ENST00000343455.3:c.1723G>A	p.Asp575Asn	p.D575N	ENST00000343455	NM_177438.2	575	Gac/Aac																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95595941	95595941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	136	355	0	ENST00000343455.3:c.602G>A	p.Arg201His	p.R201H	ENST00000343455	NM_177438.2	201	cGc/cAc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41961867	41961867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	202	811	4	ENST00000219905.7:c.775C>T	p.Arg259Trp	p.R259W	ENST00000219905	NM_001164273.1	259	Cgg/Tgg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41988772	41988772	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1476	80	810	0	ENST00000219905.7:c.1564T>G	p.Leu522Val	p.L522V	ENST00000219905	NM_001164273.1	522	Tta/Gta																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042178	42042178	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1353	399	959	1	ENST00000219905.7:c.6373G>T	p.Glu2125Ter	p.E2125*	ENST00000219905	NM_001164273.1	2125	Gaa/Taa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42054338	42054338	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	156	655	0	ENST00000219905.7:c.7522G>T	p.Glu2508Ter	p.E2508*	ENST00000219905	NM_001164273.1	2508	Gaa/Taa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42058765	42058765	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	247	701	1	ENST00000219905.7:c.8485G>T	p.Glu2829Ter	p.E2829*	ENST00000219905	NM_001164273.1	2829	Gaa/Taa																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007763	45007763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	174	560	0	ENST00000558401.1:c.210G>T	p.Glu70Asp	p.E70D	ENST00000558401	NM_004048.2	70	gaG/gaT																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007876	45007876	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	65	342	1	ENST00000558401.1:c.323C>A	p.Ser108Ter	p.S108*	ENST00000558401	NM_004048.2	108	tCa/tAa																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66729090	66729090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	257	569	0	ENST00000307102.5:c.298C>A	p.His100Asn	p.H100N	ENST00000307102	NM_002755.3	100	Cat/Aat																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66782859	66782859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	212	485	0	ENST00000307102.5:c.1088G>T	p.Arg363Ile	p.R363I	ENST00000307102	NM_002755.3	363	aGa/aTa																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88483966	88483966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	168	497	0	ENST00000360948.2:c.1604G>T	p.Arg535Met	p.R535M	ENST00000360948	NM_001012338.2	535	aGg/aTg																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91310233	91310233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	171	439	0	ENST00000355112.3:c.2287C>A	p.Leu763Ile	p.L763I	ENST00000355112	NM_000057.2	763	Cta/Ata																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99454583	99454583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	57	487	0	ENST00000268035.6:c.1502C>T	p.Ser501Leu	p.S501L	ENST00000268035	NM_000875.3	501	tCg/tTg																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	347200	347200	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	191	412	0	ENST00000262320.3:c.1811G>T	p.Arg604Ile	p.R604I	ENST00000262320	NM_003502.3	604	aGa/aTa																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	396589	396589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	182	498	0	ENST00000262320.3:c.437G>A	p.Arg146Gln	p.R146Q	ENST00000262320	NM_003502.3	146	cGa/cAa																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2098655	2098655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1242	75	637	2	ENST00000219476.3:c.39G>T	p.Glu13Asp	p.E13D	ENST00000219476	NM_000548.3	13	gaG/gaT																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3900349	3900349	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	179	512	0	ENST00000262367.5:c.747A>C	p.Gln249His	p.Q249H	ENST00000262367	NM_004380.2	249	caA/caC																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857948	9857948	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	59	511	2	ENST00000330684.3:c.3453C>A	p.Tyr1151Ter	p.Y1151*	ENST00000330684	NM_001134407.1	1151	taC/taA																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934798	9934798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	233	649	2	ENST00000330684.3:c.1492G>A	p.Gly498Ser	p.G498S	ENST00000330684	NM_001134407.1	498	Ggt/Agt																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23641217	23641217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	131	421	0	ENST00000261584.4:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000261584	NM_024675.3	753	cGa/cAa																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23646559	23646559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	98	263	0	ENST00000261584.4:c.1308G>T	p.Lys436Asn	p.K436N	ENST00000261584	NM_024675.3	436	aaG/aaT																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23647472	23647472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	48	474	1	ENST00000261584.4:c.395T>C	p.Val132Ala	p.V132A	ENST00000261584	NM_024675.3	132	gTc/gCc																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30129459	30129459	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	314	637	0	ENST00000263025.4:c.569T>C	p.Ile190Thr	p.I190T	ENST00000263025	NM_002746.2	190	aTt/aCt																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67670592	67670592	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	75	483	3	ENST00000264010.4:c.1838-1G>T		p.X613_splice	ENST00000264010	NM_006565.3	613																																													NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821095	72821095	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	283	683	1	ENST00000268489.5:c.11080A>G	p.Thr3694Ala	p.T3694A	ENST00000268489	NM_006885.3	3694	Acc/Gcc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72827706	72827706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	207	679	0	ENST00000268489.5:c.8875A>G	p.Lys2959Glu	p.K2959E	ENST00000268489	NM_006885.3	2959	Aag/Gag																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831953	72831953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1492	101	733	0	ENST00000268489.5:c.4628G>A	p.Arg1543His	p.R1543H	ENST00000268489	NM_006885.3	1543	cGc/cAc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72832272	72832272	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	296	654	1	ENST00000268489.5:c.4309A>G	p.Ser1437Gly	p.S1437G	ENST00000268489	NM_006885.3	1437	Agt/Ggt																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81942093	81942093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	100	703	2	ENST00000359376.3:c.1630G>A	p.Glu544Lys	p.E544K	ENST00000359376	NM_002661.3	544	Gag/Aag																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81990302	81990302	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	178	494	0	ENST00000359376.3:c.3573G>T	p.Glu1191Asp	p.E1191D	ENST00000359376	NM_002661.3	1191	gaG/gaT																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89348329	89348329	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	373	900	2	ENST00000301030.4:c.4621G>T	p.Glu1541Ter	p.E1541*	ENST00000301030	NM_001256183.1	1541	Gaa/Taa																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89866024	89866024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	250	455	0	ENST00000389301.3:c.815G>T	p.Arg272Ile	p.R272I	ENST00000389301	NM_000135.2	272	aGa/aTa																																												NEWRECORD																																		
GPS2	0	MSKCC	GRCh37	17	7217719	7217719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	263	753	1	ENST00000380728.2:c.208C>A	p.Leu70Met	p.L70M	ENST00000380728		70	Ctg/Atg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	205	551	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1113	264	609	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15974826	15974826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	197	492	0	ENST00000268712.3:c.4049C>A	p.Ser1350Tyr	p.S1350Y	ENST00000268712	NM_006311.3	1350	tCc/tAc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29508761	29508761	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	169	502	0	ENST00000358273.4:c.688G>T	p.Glu230Ter	p.E230*	ENST00000358273	NM_001042492.2	230	Gaa/Taa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29509612	29509612	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	132	552	0	ENST00000358273.4:c.817C>A	p.Leu273Ile	p.L273I	ENST00000358273	NM_001042492.2	273	Ctc/Atc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29550566	29550566	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	142	423	0	ENST00000358273.4:c.1826A>C	p.Lys609Thr	p.K609T	ENST00000358273	NM_001042492.2	609	aAa/aCa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29676219	29676219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	57	394	3	ENST00000358273.4:c.7271G>T	p.Arg2424Ile	p.R2424I	ENST00000358273	NM_001042492.2	2424	aGa/aTa																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37865572	37865572	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	261	593	0	ENST00000269571.5:c.441G>T	p.Glu147Asp	p.E147D	ENST00000269571		147	gaG/gaT																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38487645	38487645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	60	496	1	ENST00000254066.5:c.175G>A	p.Ala59Thr	p.A59T	ENST00000254066	NM_000964.3	59	Gcc/Acc																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41223001	41223001	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	70	639	0	ENST00000357654.3:c.4930G>T	p.Glu1644Ter	p.E1644*	ENST00000357654	NM_007294.3	1644	Gaa/Taa																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41243716	41243716	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	60	620	0	ENST00000357654.3:c.3832A>C	p.Lys1278Gln	p.K1278Q	ENST00000357654	NM_007294.3	1278	Aag/Cag																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41243770	41243770	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	209	544	0	ENST00000357654.3:c.3778T>G	p.Leu1260Val	p.L1260V	ENST00000357654	NM_007294.3	1260	Tta/Gta																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41245326	41245326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	211	500	0	ENST00000357654.3:c.2222C>A	p.Ser741Tyr	p.S741Y	ENST00000357654	NM_007294.3	741	tCt/tAt																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41245825	41245825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	159	448	0	ENST00000357654.3:c.1723G>A	p.Glu575Lys	p.E575K	ENST00000357654	NM_007294.3	575	Gaa/Aaa																																												NEWRECORD																																		
HOXB13	0	MSKCC	GRCh37	17	46805697	46805697	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	69	392	1	ENST00000290295.7:c.259T>C	p.Tyr87His	p.Y87H	ENST00000290295	NM_006361.5	87	Tac/Cac																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56440930	56440930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	255	538	1	ENST00000407977.2:c.407C>T	p.Ala136Val	p.A136V	ENST00000407977		136	gCt/gTt																																												NEWRECORD																																		
RAD51C	0	MSKCC	GRCh37	17	56772395	56772395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	239	593	0	ENST00000337432.4:c.249G>T	p.Lys83Asn	p.K83N	ENST00000337432	NM_058216.2	83	aaG/aaT																																												NEWRECORD																																		
RAD51C	0	MSKCC	GRCh37	17	56772468	56772468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	164	503	0	ENST00000337432.4:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000337432	NM_058216.2	108	Gat/Tat																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58725277	58725277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	116	687	1	ENST00000305921.3:c.851T>C	p.Phe284Ser	p.F284S	ENST00000305921	NM_003620.3	284	tTc/tCc																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59761173	59761173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	155	521	0	ENST00000259008.2:c.3234G>T	p.Lys1078Asn	p.K1078N	ENST00000259008	NM_032043.2	1078	aaG/aaT																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59761411	59761411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	68	378	0	ENST00000259008.2:c.2996G>T	p.Arg999Ile	p.R999I	ENST00000259008	NM_032043.2	999	aGa/aTa																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59821930	59821930	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200313471		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	167	456	0	ENST00000259008.2:c.2120G>A	p.Arg707His	p.R707H	ENST00000259008	NM_032043.2	707	cGt/cAt																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	743272	743272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs188857712		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	187	558	1	ENST00000314574.4:c.868G>A	p.Glu290Lys	p.E290K	ENST00000314574	NM_005433.3	290	Gaa/Aaa																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	751726	751726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	105	362	0	ENST00000314574.4:c.350G>T	p.Arg117Ile	p.R117I	ENST00000314574	NM_005433.3	117	aGa/aTa																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	163	487	1	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2180724	2180724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	256	580	0	ENST00000398665.3:c.94G>A	p.Asp32Asn	p.D32N	ENST00000398665	NM_032482.2	32	Gat/Aat																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5220045	5220045	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145842090		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	209	565	1	ENST00000357368.4:c.3670G>A	p.Asp1224Asn	p.D1224N	ENST00000357368	NM_002850.3	1224	Gac/Aac																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5265175	5265175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147257283		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	157	541	0	ENST00000357368.4:c.412G>A	p.Asp138Asn	p.D138N	ENST00000357368	NM_002850.3	138	Gac/Aac																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11098351	11098351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	158	474	1	ENST00000344626.4:c.869C>T	p.Ala290Val	p.A290V	ENST00000344626	NM_003072.3	290	gCg/gTg																																												NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15276316	15276316	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs372834264		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	163	452	0	ENST00000263388.2:c.5678G>A	p.Arg1893Gln	p.R1893Q	ENST00000263388	NM_000435.2	1893	cGa/cAa																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15291527	15291527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	224	479	1	ENST00000263388.2:c.3107G>A	p.Arg1036Gln	p.R1036Q	ENST00000263388	NM_000435.2	1036	cGa/cAa																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41745625	41745625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	111	583	0	ENST00000301178.4:c.1312G>A	p.Val438Met	p.V438M	ENST00000301178	NM_021913.4	438	Gtg/Atg																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41749591	41749591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	318	622	1	ENST00000301178.4:c.1516C>T	p.Arg506Cys	p.R506C	ENST00000301178	NM_021913.4	506	Cgt/Tgt																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52729220	52729220	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	63	504	0	ENST00000322088.6:c.1756C>A	p.Leu586Met	p.L586M	ENST00000322088	NM_014225.5	586	Ctg/Atg																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31021700	31021700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	79	255	2	ENST00000375687.4:c.1699C>A	p.Pro567Thr	p.P567T	ENST00000375687	NM_015338.5	567	Ccc/Acc																																												NEWRECORD																																		
SRC	0	MSKCC	GRCh37	20	36028627	36028627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	214	630	0	ENST00000358208.4:c.969G>T	p.Glu323Asp	p.E323D	ENST00000358208		323	gaG/gaT																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39729850	39729850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	58	382	1	ENST00000361337.2:c.1165G>T	p.Asp389Tyr	p.D389Y	ENST00000361337	NM_003286.2	389	Gat/Tat																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39744970	39744970	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	428	579	0	ENST00000361337.2:c.1760A>G	p.Lys587Arg	p.K587R	ENST00000361337	NM_003286.2	587	aAg/aGg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40733283	40733283	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	148	375	0	ENST00000373198.4:c.3523T>G	p.Phe1175Val	p.F1175V	ENST00000373198	NM_133170.3	1175	Ttc/Gtc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40743943	40743943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	249	405	1	ENST00000373198.4:c.3052C>T	p.Arg1018Ter	p.R1018*	ENST00000373198	NM_133170.3	1018	Cga/Tga																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40877330	40877330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	111	341	0	ENST00000373198.4:c.2366G>A	p.Arg789Lys	p.R789K	ENST00000373198	NM_133170.3	789	aGg/aAg																																												NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751886972		P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	331	462	1	ENST00000373198.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000373198	NM_133170.3	413	gCg/gTg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41306638	41306638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	176	496	1	ENST00000373198.4:c.1021G>A	p.Asp341Asn	p.D341N	ENST00000373198	NM_133170.3	341	Gac/Aac																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46268450	46268450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1436	188	781	0	ENST00000371998.3:c.2837A>C	p.Asn946Thr	p.N946T	ENST00000371998		946	aAt/aCt																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57485115	57485115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	335	414	0	ENST00000371085.3:c.949C>T	p.Arg317Cys	p.R317C	ENST00000371085	NM_000516.4	317	Cgc/Tgc																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39775575	39775575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	95	451	1	ENST00000288319.7:c.445G>T	p.Glu149Ter	p.E149*	ENST00000288319	NM_182918.3	149	Gaa/Taa																																												NEWRECORD																																		
MAPK1	0	MSKCC	GRCh37	22	22162055	22162055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	55	490	1	ENST00000215832.6:c.200G>T	p.Arg67Ile	p.R67I	ENST00000215832	NM_002745.4	67	aGa/aTa																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24143241	24143241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	279	656	2	ENST00000263121.7:c.473G>A	p.Arg158Gln	p.R158Q	ENST00000263121	NM_003073.3	158	cGa/cAa																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30064321	30064321	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	193	467	0	ENST00000338641.4:c.886-1G>A		p.X296_splice	ENST00000338641	NM_000268.3	296																																													NEWRECORD																																		
EIF1AX	0	MSKCC	GRCh37	X	20153903	20153903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	207	182	0	ENST00000379607.5:c.157G>A	p.Asp53Asn	p.D53N	ENST00000379607	NM_001412.3	53	Gat/Aat																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39933640	39933640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	225	348	0	ENST00000378444.4:c.959C>T	p.Ala320Val	p.A320V	ENST00000378444	NM_001123385.1	320	gCg/gTg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53222800	53222800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	77	280	0	ENST00000375401.3:c.4136C>T	p.Ser1379Leu	p.S1379L	ENST00000375401	NM_004187.3	1379	tCg/tTg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53245277	53245277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	246	339	0	ENST00000375401.3:c.760G>T	p.Asp254Tyr	p.D254Y	ENST00000375401	NM_004187.3	254	Gac/Tac																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	308	338	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765275	66765275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	147	277	0	ENST00000374690.3:c.287C>A	p.Ser96Tyr	p.S96Y	ENST00000374690	NM_000044.3	96	tCt/tAt																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766441	66766441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	25	118	1	ENST00000374690.3:c.1453C>T	p.Arg485Trp	p.R485W	ENST00000374690	NM_000044.3	485	Cgg/Tgg																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66863204	66863204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	204	318	1	ENST00000374690.3:c.1723C>A	p.Leu575Ile	p.L575I	ENST00000374690	NM_000044.3	575	Ctc/Atc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70348545	70348545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	265	334	1	ENST00000374080.3:c.3452C>T	p.Ala1151Val	p.A1151V	ENST00000374080		1151	gCc/gTc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938090	76938090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	27	245	0	ENST00000373344.5:c.2658G>T	p.Glu886Asp	p.E886D	ENST00000373344	NM_000489.3	886	gaG/gaT																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938330	76938330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	134	221	0	ENST00000373344.5:c.2418G>T	p.Lys806Asn	p.K806N	ENST00000373344	NM_000489.3	806	aaG/aaT																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76939584	76939584	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	229	322	0	ENST00000373344.5:c.1164A>C	p.Lys388Asn	p.K388N	ENST00000373344	NM_000489.3	388	aaA/aaC																																												NEWRECORD																																		
XIAP	0	MSKCC	GRCh37	X	123034413	123034413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	274	294	0	ENST00000355640.3:c.1170G>T	p.Lys390Asn	p.K390N	ENST00000355640		390	aaG/aaT																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123176470	123176470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	405	345	1	ENST00000218089.9:c.437G>A	p.Arg146Gln	p.R146Q	ENST00000218089	NM_001042749.1	146	cGa/cAa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123215264	123215264	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	332	258	0	ENST00000218089.9:c.2810A>C	p.Asn937Thr	p.N937T	ENST00000218089	NM_001042749.1	937	aAt/aCt																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123220441	123220441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	42	374	0	ENST00000218089.9:c.3098G>A	p.Arg1033Gln	p.R1033Q	ENST00000218089	NM_001042749.1	1033	cGa/cAa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212568865	212568866	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	170	573	0	ENST00000342788.4:c.1252dup	p.Ser418PhefsTer2	p.S418Ffs*2	ENST00000342788	NM_005235.2	418	tct/tTct																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	168	264	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220705	1220706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	81	263	0	ENST00000326873.7:c.727dup	p.Val243GlyfsTer23	p.V243Gfs*23	ENST00000326873	NM_000455.4	241	-/G																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20402702	20402702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	80	293	0	ENST00000346618.3:c.239C>T	p.Ala80Val	p.A80V	ENST00000346618	NM_001949.4	80	gCc/gTc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70446398	70446398	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	95	324	0	ENST00000373644.4:c.5338C>T	p.Arg1780Ter	p.R1780*	ENST00000373644	NM_030625.2	1780	Cga/Tga																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41100988	41100988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	36	218	0	ENST00000373198.4:c.1368G>T	p.Met456Ile	p.M456I	ENST00000373198	NM_133170.3	456	atG/atT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577093	7577094	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGG			P-0008443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	118	362	0	ENST00000269305.4:c.844_845insCCC	p.Asp281_Arg282insPro	p.D281_R282insP	ENST00000269305	NM_001126112.2	282	cgg/cCCCgg																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31022490	31022490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	65	142	0	ENST00000375687.4:c.1975G>C	p.Gly659Arg	p.G659R	ENST00000375687	NM_015338.5	659	Ggt/Cgt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212426635	212426640	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTGG	ATCTGG	TA			P-0001996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	31	380	0	ENST00000342788.4:c.2475_2480delCCAGATinsTA	p.Gln826LysfsTer5	p.Q826Kfs*5	ENST00000342788	NM_005235.2	825	gtCCAGATa/gtTAa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212426679	212426684	+	inframe_deletion	In_Frame_Del	DEL	CTTGTG	CTTGTG	-			P-0001996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	33	342	0	ENST00000342788.4:c.2431_2436delCACAAG	p.His811_Lys812del	p.H811_K812del	ENST00000342788	NM_005235.2	811	CACAAG/-																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577127	7577128	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			51	302	363	1	ENST00000269305.4:c.810dup	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	270	-/T																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29665804	29665830	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACAGCCACTTCTTAATAAGGTAATTA	TACAGCCACTTCTTAATAAGGTAATTA	-			P-0001996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	49	360	0	ENST00000358273.4:c.6902_6921+7delTACAGCCACTTCTTAATAAGGTAATTA		p.X2301_splice	ENST00000358273	NM_001042492.2	2301																																													NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41514570	41514571	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0001996-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	42	244	0	ENST00000373198.4:c.90_91delTG	p.Gly31LeufsTer4	p.G31Lfs*4	ENST00000373198	NM_133170.3	30	ggTGgc/gggc																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	60	183	0	ENST00000369535.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000369535	NM_002524.4	12	gGt/gCt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	114	186	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag																																												NEWRECORD																																		
VTCN1	0	MSKCC	GRCh37	1	117695892	117695892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	59	204	0	ENST00000369458.3:c.545C>A	p.Ala182Glu	p.A182E	ENST00000369458	NM_024626.3	182	gCa/gAa																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575150	48575150	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	84	285	0	ENST00000342988.3:c.344G>C	p.Cys115Ser	p.C115S	ENST00000342988	NM_005359.5	115	tGt/tCt																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40741973	40741973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	146	286	0	ENST00000392038.2:c.999G>C	p.Trp333Cys	p.W333C	ENST00000392038	NM_001626.4	333	tgG/tgC																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30069382	30069382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	202	319	1	ENST00000338641.4:c.1247C>A	p.Ala416Glu	p.A416E	ENST00000338641	NM_000268.3	416	gCg/gAg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108202212	108202213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGTACCAATTGGCTGCTAGAATGGGGACCA			P-0004904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	74	213	0	ENST00000278616.4:c.7559_7589dup	p.Lys2530AsnfsTer7	p.K2530Nfs*7	ENST00000278616	NM_000051.3	2519	-/ATGTACCAATTGGCTGCTAGAATGGGGACCA																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			655	28	483	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131927568	131927568	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	88	274	0	ENST00000265335.6:c.1636-1G>T		p.X546_splice	ENST00000265335		546																																													NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	59	371	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165212	47165213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	121	409	0	ENST00000409792.3:c.913dup	p.Thr305AsnfsTer4	p.T305Nfs*4	ENST00000409792	NM_014159.6	305	aca/aAca																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41551118	41551118	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			655	123	450	0	ENST00000263253.7:c.3261+1G>C		p.X1087_splice	ENST00000263253	NM_001429.3	1087																																													NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226552814	226552814	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			796	83	405	0	ENST00000366794.5:c.2547G>T	p.Lys849Asn	p.K849N	ENST00000366794	NM_001618.3	849	aaG/aaT																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98248150	98248150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	115	337	0	ENST00000331920.6:c.401G>T	p.Gly134Val	p.G134V	ENST00000331920	NM_000264.3	134	gGa/gTa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32900387	32900387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	128	440	0	ENST00000380152.3:c.484G>T	p.Gly162Trp	p.G162W	ENST00000380152		162	Ggg/Tgg																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2223271	2223271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	43	389	1	ENST00000326181.6:c.883G>A	p.Asp295Asn	p.D295N	ENST00000326181	NM_032271.2	295	Gat/Aat																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41226395	41226395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	154	489	0	ENST00000357654.3:c.4628G>T	p.Gly1543Val	p.G1543V	ENST00000357654	NM_007294.3	1543	gGg/gTg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2216763	2216763	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	51	161	0	ENST00000398665.3:c.2407A>T	p.Arg803Ter	p.R803*	ENST00000398665	NM_032482.2	803	Aga/Tga																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10597492	10597492	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	110	369	0	ENST00000171111.5:c.1711G>C	p.Gly571Arg	p.G571R	ENST00000171111	NM_203500.1	571	Ggc/Cgc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11123688	11123688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			604	34	410	1	ENST00000344626.4:c.2338G>A	p.Glu780Lys	p.E780K	ENST00000344626	NM_003072.3	780	Gag/Aag																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18273811	18273811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	146	458	1	ENST00000222254.8:c.1144C>T	p.His382Tyr	p.H382Y	ENST00000222254	NM_005027.3	382	Cac/Tac																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546626	9546626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			747	136	507	0	ENST00000353224.5:c.1396G>C	p.Ala466Pro	p.A466P	ENST00000353224	NM_177990.2	466	Gcc/Ccc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039669	47039669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	127	232	0	ENST00000329236.7:c.887G>T	p.Gly296Val	p.G296V	ENST00000329236	NM_001204466.1	296	gGc/gTc																																												NEWRECORD																																		
SH2D1A	0	MSKCC	GRCh37	X	123480508	123480508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	108	174	0	ENST00000371139.4:c.16G>T	p.Val6Leu	p.V6L	ENST00000371139	NM_001114937.2	6	Gtg/Ttg																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	10	758	4	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	65	414	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	16	550	1	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	22	705	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589619	67589620	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	83	640	0	ENST00000274335.5:c.1384_1385delGA	p.Glu462IlefsTer2	p.E462Ifs*2	ENST00000274335		461	cGA/c																																												NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	48	867	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			82	24	376	0	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100195	27100195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	28	553	1	ENST00000324856.7:c.3991C>T	p.Gln1331Ter	p.Q1331*	ENST00000324856	NM_006015.4	1331	Cag/Tag																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65311207	65311207	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	11	713	0	ENST00000342505.4:c.2104C>G	p.Leu702Val	p.L702V	ENST00000342505	NM_002227.2	702	Ctg/Gtg																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			147	33	831	0	ENST00000397062.3:c.246A>T	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaT																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165464	47165464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	30	898	0	ENST00000409792.3:c.662T>C	p.Val221Ala	p.V221A	ENST00000409792	NM_014159.6	221	gTt/gCt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106158064	106158064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			61	20	804	1	ENST00000380013.4:c.2965C>T	p.Pro989Ser	p.P989S	ENST00000380013	NM_001127208.2	989	Cca/Tca																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106158277	106158277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	21	734	1	ENST00000380013.4:c.3178G>T	p.Gly1060Trp	p.G1060W	ENST00000380013	NM_001127208.2	1060	Ggg/Tgg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187629483	187629483	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			78	25	803	1	ENST00000441802.2:c.1499A>G	p.Tyr500Cys	p.Y500C	ENST00000441802	NM_005245.3	500	tAc/tGc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8485885	8485885	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs139259906		P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			57	17	861	0	ENST00000356435.5:c.2932A>G	p.Thr978Ala	p.T978A	ENST00000356435		978	Act/Gct																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135779084	135779084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	31	708	0	ENST00000298552.3:c.2162G>A	p.Arg721His	p.R721H	ENST00000298552	NM_001162426.1	721	cGc/cAc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332109	70332109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			75	15	760	0	ENST00000373644.4:c.14G>A	p.Arg5His	p.R5H	ENST00000373644	NM_030625.2	5	cGc/cAc																																												NEWRECORD																																		
MEF2B	0	MSKCC	GRCh37	19	19256679	19256679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			90	22	430	0	ENST00000162023.5:c.1034G>A	p.Arg345Gln	p.R345Q	ENST00000162023		345	cGg/cAg																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31020781	31020781	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			52	15	443	0	ENST00000375687.4:c.1078G>T	p.Gly360Ter	p.G360*	ENST00000375687	NM_015338.5	360	Gga/Tga																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41566522	41566522	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs200897987		P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			113	32	865	0	ENST00000263253.7:c.4399T>A	p.Tyr1467Asn	p.Y1467N	ENST00000263253	NM_001429.3	1467	Tac/Aac																																												NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	14	515	4	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67593247	67593247	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	79	741	0	ENST00000274335.5:c.1994del	p.Gly665AlafsTer3	p.G665Afs*3	ENST00000274335		665	Ggc/gc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711887	89711887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	23	710	0	ENST00000371953.3:c.507delC	p.Ser170ValfsTer13	p.S170Vfs*13	ENST00000371953	NM_000314.4	169	Ccc/cc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	120	552	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	137	562	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332368	70332368	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	94	538	0	ENST00000373644.4:c.273T>A	p.Phe91Leu	p.F91L	ENST00000373644	NM_030625.2	91	ttT/ttA																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120403	70120404	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001761-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	144	649	1	ENST00000245479.2:c.1406dup	p.Met469IlefsTer109	p.M469Ifs*109	ENST00000245479	NM_000346.3	469	atg/aTtg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	9	309	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	10	342	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	11	313	1	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	5	205	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	11	408	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																												NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	14	344	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3790455	3790455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	14	415	0	ENST00000262367.5:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000262367	NM_004380.2	1360	Cga/Tga																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198273111	198273111	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	15	336	0	ENST00000335508.6:c.1099A>G	p.Met367Val	p.M367V	ENST00000335508	NM_012433.2	367	Atg/Gtg																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209104713	209104713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	32	289	0	ENST00000345146.2:c.865G>A	p.Gly289Ser	p.G289S	ENST00000345146	NM_005896.2	289	Ggc/Agc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52439208	52439208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	19	302	0	ENST00000460680.1:c.1034G>T	p.Gly345Val	p.G345V	ENST00000460680	NM_004656.3	345	gGg/gTg																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142168290	142168290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	24	272	0	ENST00000350721.4:c.7916G>A	p.Gly2639Asp	p.G2639D	ENST00000350721	NM_001184.3	2639	gGt/gAt																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	251555	251555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	21	285	0	ENST00000264932.6:c.1766G>A	p.Arg589Gln	p.R589Q	ENST00000264932	NM_004168.2	589	cGg/cAg																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86679546	86679546	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	49	312	0	ENST00000274376.6:c.2707C>T	p.Arg903Ter	p.R903*	ENST00000274376	NM_002890.2	903	Cga/Tga																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40486032	40486032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	20	533	0	ENST00000264657.5:c.833G>A	p.Arg278His	p.R278H	ENST00000264657	NM_139276.2	278	cGt/cAt																																												NEWRECORD																																		
SRSF2	0	MSKCC	GRCh37	17	74732469	74732469	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	57	488	0	ENST00000359995.5:c.440C>G	p.Ser147Trp	p.S147W	ENST00000359995	NM_001195427.1	147	tCg/tGg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44921908	44921908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	27	480	0	ENST00000377967.4:c.1442G>A	p.Arg481His	p.R481H	ENST00000377967	NM_021140.2	481	cGc/cAc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44936072	44936072	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	43	411	0	ENST00000377967.4:c.2832+1G>A		p.X944_splice	ENST00000377967	NM_021140.2	944																																													NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44949076	44949076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	17	472	1	ENST00000377967.4:c.3637C>T	p.Arg1213Ter	p.R1213*	ENST00000377967	NM_021140.2	1213	Cga/Tga																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53247102	53247102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	18	537	0	ENST00000375401.3:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000375401	NM_004187.3	133	cGg/cAg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	17	55	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																												NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	71	239	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																												NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	14	383	1	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																												NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	19	359	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042483	42042483	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	26	552	0	ENST00000219905.7:c.6682delA	p.Ser2228ValfsTer10	p.S2228Vfs*10	ENST00000219905	NM_001164273.1	2226	ggA/gg																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32911443	32911443	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	16	496	0	ENST00000380152.3:c.2957del	p.Asn986IlefsTer5	p.N986Ifs*5	ENST00000380152		984	gAa/ga																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	14	341	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001208-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	98	307	0	ENST00000263967.3:c.323G>T	p.Arg108Leu	p.R108L	ENST00000263967	NM_006218.2	108	cGt/cTt																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0001208-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	303	228	0	ENST00000397752.3:c.3028+1G>T		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																													NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106197275	106197276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001208-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	53	261	0	ENST00000380013.4:c.5609dup	p.Ile1871AsnfsTer4	p.I1871Nfs*4	ENST00000380013	NM_001127208.2	1870	tca/tCca																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	82	330	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	84	367	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	253	512	4	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																												NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39913252	39913253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs797044647		P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	284	313	0	ENST00000378444.4:c.4862dup	p.Gly1622ArgfsTer7	p.G1622Rfs*7	ENST00000378444	NM_001123385.1	1621	cca/ccCa																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	140	238	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	112	187	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372389	55372389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	63	491	0	ENST00000297316.4:c.1079G>A	p.Arg360His	p.R360H	ENST00000297316	NM_022454.3	360	cGc/cAc																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	80	154	3	ENST00000307078.5:c.1214_1215delAG	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30729962	30729962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	146	228	0	ENST00000359013.4:c.1558C>T	p.Arg520Ter	p.R520*	ENST00000359013	NM_001024847.2	520	Cga/Tga																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56493620	56493621	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	214	420	1	ENST00000267101.3:c.2944_2945del		p.X982_splice	ENST00000267101	NM_001982.3	982																																													NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180058747	180058748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	211	467	0	ENST00000261937.6:c.89dupC	p.Thr31AspfsTer15	p.T31Dfs*15	ENST00000261937	NM_182925.4	30	ccg/ccCg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105667	27105667	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	243	481	0	ENST00000324856.7:c.5278G>T	p.Glu1760Ter	p.E1760*	ENST00000324856	NM_006015.4	1760	Gag/Tag																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198281545	198281545	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	270	533	1	ENST00000335508.6:c.586C>T	p.Arg196Ter	p.R196*	ENST00000335508	NM_012433.2	196	Cga/Tga																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202141596	202141596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	216	442	0	ENST00000358485.4:c.884G>A	p.Cys295Tyr	p.C295Y	ENST00000358485	NM_001080125.1	295	tGt/tAt																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142231267	142231267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	230	459	0	ENST00000350721.4:c.4687A>G	p.Thr1563Ala	p.T1563A	ENST00000350721	NM_001184.3	1563	Acc/Gcc																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131973914	131973914	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	176	256	0	ENST00000265335.6:c.3617A>G	p.Lys1206Arg	p.K1206R	ENST00000265335		1206	aAg/aGg																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149513202	149513202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	230	499	1	ENST00000261799.4:c.881C>T	p.Thr294Met	p.T294M	ENST00000261799	NM_002609.3	294	aCg/aTg																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112029160	112029160	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1326	336	814	0	ENST00000368678.4:c.408T>G	p.Asn136Lys	p.N136K	ENST00000368678		136	aaT/aaG																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729984	41729984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1889	617	1036	1	ENST00000242208.4:c.545C>T	p.Pro182Leu	p.P182L	ENST00000242208	NM_002192.2	182	cCg/cTg																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140494169	140494169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	216	582	0	ENST00000288602.6:c.1079G>A	p.Arg360Gln	p.R360Q	ENST00000288602	NM_004333.4	360	cGa/cAa																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117878836	117878836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	271	714	0	ENST00000297338.2:c.133A>G	p.Ile45Val	p.I45V	ENST00000297338	NM_006265.2	45	Atc/Gtc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145737842	145737842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	140	347	1	ENST00000428558.2:c.2988G>T	p.Met996Ile	p.M996I	ENST00000428558	NM_004260.3	996	atG/atT																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87570285	87570285	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	61	326	1	ENST00000277120.3:c.2025G>T	p.Gln675His	p.Q675H	ENST00000277120		675	caG/caT																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98220318	98220318	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	198	291	2	ENST00000331920.6:c.3145A>G	p.Asn1049Asp	p.N1049D	ENST00000331920	NM_000264.3	1049	Aac/Gac																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63845643	63845643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	79	237	0	ENST00000279873.7:c.1382C>T	p.Pro461Leu	p.P461L	ENST00000279873	NM_032199.2	461	cCc/cTc																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114925513	114925513	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1590	492	978	0	ENST00000543371.1:c.1591A>G	p.Met531Val	p.M531V	ENST00000543371	NM_001198531.1	531	Atg/Gtg																																												NEWRECORD																																		
YAP1	0	MSKCC	GRCh37	11	102076624	102076624	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	94	193	0	ENST00000282441.5:c.803C>T	p.Ala268Val	p.A268V	ENST00000282441	NM_001130145.2	268	gCc/gTc																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1022610	1022610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	149	451	0	ENST00000358495.3:c.1204G>A	p.Glu402Lys	p.E402K	ENST00000358495	NM_134424.2	402	Gaa/Aaa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49444555	49444555	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	97	228	0	ENST00000301067.7:c.2816T>A	p.Leu939His	p.L939H	ENST00000301067	NM_003482.3	939	cTc/cAc																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50480106	50480106	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	180	338	0	ENST00000394963.4:c.340C>T	p.Gln114Ter	p.Q114*	ENST00000394963	NM_003076.4	114	Cag/Tag																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50484373	50484373	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	187	326	0	ENST00000394963.4:c.1133G>T	p.Ser378Ile	p.S378I	ENST00000394963	NM_003076.4	378	aGt/aTt																																												NEWRECORD																																		
RAB35	0	MSKCC	GRCh37	12	120536891	120536891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1608	428	859	3	ENST00000229340.5:c.295G>A	p.Val99Ile	p.V99I	ENST00000229340	NM_006861.6	99	Gtc/Atc																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121435294	121435294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	42	288	0	ENST00000257555.6:c.1327G>T	p.Ala443Ser	p.A443S	ENST00000257555		443	Gca/Tca																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21563156	21563156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	206	367	0	ENST00000382592.4:c.763C>T	p.Arg255Trp	p.R255W	ENST00000382592	NM_014572.2	255	Cgg/Tgg																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36987067	36987067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	158	312	0	ENST00000354822.5:c.622C>T	p.Arg208Ter	p.R208*	ENST00000354822	NM_001079668.2	208	Cga/Tga																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99456376	99456376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	199	349	0	ENST00000268035.6:c.1693G>T	p.Gly565Cys	p.G565C	ENST00000268035	NM_000875.3	565	Ggc/Tgc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3788672	3788672	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	185	384	0	ENST00000262367.5:c.4282C>T	p.Arg1428Cys	p.R1428C	ENST00000262367	NM_004380.2	1428	Cgt/Tgt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72845477	72845477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	231	567	0	ENST00000268489.5:c.3863C>T	p.Thr1288Met	p.T1288M	ENST00000268489	NM_006885.3	1288	aCg/aTg																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41244880	41244880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	120	384	0	ENST00000357654.3:c.2668G>T	p.Gly890Trp	p.G890W	ENST00000357654	NM_007294.3	890	Ggg/Tgg																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56436128	56436128	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	373	621	0	ENST00000407977.2:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000407977		337	Cga/Tga																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15353815	15353815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	183	462	1	ENST00000263377.2:c.3065C>T	p.Pro1022Leu	p.P1022L	ENST00000263377	NM_058243.2	1022	cCg/cTg																																												NEWRECORD																																		
ICOSLG	0	MSKCC	GRCh37	21	45651171	45651171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	255	467	1	ENST00000407780.3:c.854G>T	p.Ser285Ile	p.S285I	ENST00000407780	NM_001283052.1	285	aGc/aTc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76764017	76764017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	60	389	1	ENST00000373344.5:c.7291G>A	p.Ala2431Thr	p.A2431T	ENST00000373344	NM_000489.3	2431	Gca/Aca																																												NEWRECORD																																		
SRSF2	0	MSKCC	GRCh37	17	74732484	74732519	+	inframe_deletion	In_Frame_Del	DEL	GATCGGCTGCGAGACCTGGAACGACTCCGACTCCGG	GATCGGCTGCGAGACCTGGAACGACTCCGACTCCGG	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1437	258	745	0	ENST00000359995.5:c.390_425del	p.Ser132_Arg143del	p.S132_R143del	ENST00000359995	NM_001195427.1	130	tcCCGGAGTCGGAGTCGTTCCAGGTCTCGCAGCCGATCt/tct																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190728564	190728565	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	131	488	0	ENST00000441310.2:c.1958dup	p.Ile654AspfsTer21	p.I654Dfs*21	ENST00000441310	NM_000534.4	651	aga/agAa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118369100	118369101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	123	252	0	ENST00000534358.1:c.5822dup	p.Pro1942AlafsTer31	p.P1942Afs*31	ENST00000534358	NM_005933.3	1940	caa/cAaa																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	175957465	175957465	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	177	552	0	ENST00000367669.3:c.1931del	p.Asn644ThrfsTer3	p.N644Tfs*3	ENST00000367669	NM_022457.5	644	aAc/ac																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1622183	1622183	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1553	86	741	0	ENST00000344749.5:c.692del	p.Pro231ArgfsTer53	p.P231Rfs*53	ENST00000344749	NM_001136139.2	231	cCg/cg																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39617680	39617680	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	102	426	0	ENST00000262039.4:c.1869del	p.Phe623LeufsTer43	p.F623Lfs*43	ENST00000262039	NM_002647.2	622	Ttt/tt																																												NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372092	55372093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	28	179	2	ENST00000297316.4:c.788dup	p.Glu264GlyfsTer101	p.E264Gfs*101	ENST00000297316	NM_022454.3	261	ggc/ggCc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057961	27057962	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0008729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	213	398	0	ENST00000324856.7:c.1669_1670del	p.Gln557ValfsTer65	p.Q557Vfs*65	ENST00000324856	NM_006015.4	557	CAg/g																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002545-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	115	400	0	ENST00000288602.6:c.1803A>T	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574002	7574003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0002545-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	188	507	0	ENST00000269305.4:c.1024_1025insTA	p.Arg342LeufsTer4	p.R342Lfs*4	ENST00000269305	NM_001126112.2	342	cga/cTAga																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10248629	10248629	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002545-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	84	337	0	ENST00000340748.4:c.4124del	p.Pro1375ArgfsTer43	p.P1375Rfs*43	ENST00000340748		1375	cCg/cg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139401001	139401001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007981-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			412	321	332	0	ENST00000277541.6:c.3992G>T	p.Gly1331Val	p.G1331V	ENST00000277541	NM_017617.3	1331	gGg/gTg																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852092	63852093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007981-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			284	179	200	0	ENST00000279873.7:c.2871dup	p.Ser958IlefsTer9	p.S958Ifs*9	ENST00000279873	NM_032199.2	957	gta/gtAa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18446909	18446909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	48	341	0	ENST00000266497.5:c.994C>A	p.His332Asn	p.H332N	ENST00000266497		332	Cat/Aat																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	98009792	98009792	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	36	286	1	ENST00000289081.3:c.172A>T	p.Asn58Tyr	p.N58Y	ENST00000289081	NM_000136.2	58	Aat/Tat																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17743005	17743005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	30	247	0	ENST00000250003.3:c.913C>A	p.Pro305Thr	p.P305T	ENST00000250003	NM_002478.4	305	Ccg/Acg																																												NEWRECORD																																		
SRSF2	0	MSKCC	GRCh37	17	74732413	74732413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1447	106	609	0	ENST00000359995.5:c.496G>T	p.Ala166Ser	p.A166S	ENST00000359995	NM_001195427.1	166	Gca/Tca																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546581	9546581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	38	296	0	ENST00000353224.5:c.1441G>T	p.Asp481Tyr	p.D481Y	ENST00000353224	NM_177990.2	481	Gac/Tac																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40828000	40828000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	22	176	0	ENST00000373198.4:c.2428C>A	p.Gln810Lys	p.Q810K	ENST00000373198	NM_133170.3	810	Cag/Aag																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11114063	11114063	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	53	427	1	ENST00000344626.4:c.1992del	p.Glu665ArgfsTer109	p.E665Rfs*109	ENST00000344626	NM_003072.3	664	gAa/ga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578473	7578474	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	74	221	1	ENST00000269305.4:c.456_457insT	p.Pro153SerfsTer28	p.P153Sfs*28	ENST00000269305	NM_001126112.2	152	-/T																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	414	383	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66765149	66765151	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-	rs764402637		P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	46	324	0	ENST00000374690.3:c.170_172del	p.Leu57del	p.L57del	ENST00000374690	NM_000044.3	54	tTGCtg/ttg																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138199958	138199958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	57	195	4	ENST00000237289.4:c.1376C>T	p.Ser459Leu	p.S459L	ENST00000237289	NM_001270507.1	459	tCg/tTg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860143	151860143	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	268	427	0	ENST00000262189.6:c.10519C>T	p.Arg3507Ter	p.R3507*	ENST00000262189	NM_170606.2	3507	Cga/Tga																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	405	424	0	ENST00000292408.4:c.1648G>A	p.Val550Met	p.V550M	ENST00000292408	NM_213647.1	550	Gtg/Atg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11184589	11184589	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	146	507	0	ENST00000361445.4:c.6628G>C	p.Ala2210Pro	p.A2210P	ENST00000361445	NM_004958.3	2210	Gcc/Ccc																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38508610	38508610	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1391	152	585	0	ENST00000254066.5:c.658C>G	p.Leu220Val	p.L220V	ENST00000254066	NM_000964.3	220	Ctg/Gtg																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105243057	105243058	+	inframe_insertion	In_Frame_Ins	INS	-	-	GATGATGAAGGTGTTGGGCCGGGGCCGCTCCGT			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1608	617	604	0	ENST00000349310.3:c.193_225dup	p.Thr65_Ile75dup	p.T65_I75dup	ENST00000349310	NM_001014432.1	65	-/ACGGAGCGGCCCCGGCCCAACACCTTCATCATC																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21555684	21555685	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0007282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	41	627	1	ENST00000382592.4:c.2585_2586delinsAA	p.Arg862Gln	p.R862Q	ENST00000382592	NM_014572.2	862	cGG/cAA																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	118	339	2	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971101	21971101	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	142	154	0	ENST00000361570.3:c.423C>A	p.Cys141Ter	p.C141*	ENST00000361570	NM_058195.3	141	tgC/tgA																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971101	21971101	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	142	154	0	ENST00000361570.3:c.423C>A	p.Cys141Ter	p.C141*	ENST00000361570	NM_058195.3	141	tgC/tgA																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3778741	3778741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	167	249	0	ENST00000262367.5:c.6307C>A	p.Gln2103Lys	p.Q2103K	ENST00000262367	NM_004380.2	2103	Cag/Aag																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7163165	7163165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	251	298	0	ENST00000302850.5:c.1907C>T	p.Ser636Phe	p.S636F	ENST00000302850	NM_000208.2	636	tCc/tTc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579708	7579709	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0003548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	238	361	0	ENST00000269305.4:c.87_88del	p.Asn29LysfsTer13	p.N29Kfs*13	ENST00000269305	NM_001126112.2	29	aaCAac/aaac																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95570304	95570305	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0003548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	136	214	0	ENST00000343455.3:c.3427_3428dup	p.Glu1144Ter	p.E1144*	ENST00000343455	NM_177438.2	1143	cta/ctCTa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	39	301	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0005211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	34	316	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72058652	72058652	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0005211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	28	525	0	ENST00000357731.5:c.789-1G>C		p.X263_splice	ENST00000357731	NM_173808.2	263																																													NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66535310	66535310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	214	488	0	ENST00000273854.3:c.151C>T	p.Arg51Trp	p.R51W	ENST00000273854	NM_004439.5	51	Cgg/Tgg																																												NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0001073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	208	707	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	191	347	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333683	70333683	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	201	525	0	ENST00000373644.4:c.1588A>G	p.Ile530Val	p.I530V	ENST00000373644	NM_030625.2	530	Ata/Gta																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420288	49420288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	205	459	0	ENST00000301067.7:c.15461G>A	p.Arg5154Gln	p.R5154Q	ENST00000301067	NM_003482.3	5154	cGg/cAg																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63554590	63554590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	159	425	0	ENST00000307078.5:c.149C>A	p.Pro50His	p.P50H	ENST00000307078	NM_004655.3	50	cCt/cAt																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53226064	53226064	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			54	151	578	0	ENST00000375401.3:c.2785C>T	p.Arg929Ter	p.R929*	ENST00000375401	NM_004187.3	929	Cga/Tga																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589581	67589583	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0001073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	284	435	0	ENST00000274335.5:c.1345_1347del	p.Leu449del	p.L449del	ENST00000274335		448	aaATTa/aaa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89690830	89690831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			687	297	340	0	ENST00000371953.3:c.240dup	p.Phe81IlefsTer2	p.F81Ifs*2	ENST00000371953	NM_000314.4	79	-/A																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717616	89717617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001073-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	517	330	0	ENST00000371953.3:c.642dup	p.Phe215ValfsTer28	p.F215Vfs*28	ENST00000371953	NM_000314.4	214	cag/caGg																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	175958549	175958549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002692-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	44	351	0	ENST00000367669.3:c.1796G>A	p.Arg599His	p.R599H	ENST00000367669	NM_022457.5	599	cGt/cAt																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18439830	18439830	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186647102		P-0002692-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	76	301	0	ENST00000266497.5:c.728C>T	p.Thr243Met	p.T243M	ENST00000266497		243	aCg/aTg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002692-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	130	250	0	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	56	125	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TMEM127	0	MSKCC	GRCh37	2	96919598	96919598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	106	704	1	ENST00000258439.3:c.665C>T	p.Ala222Val	p.A222V	ENST00000258439	NM_001193304.2	222	gCg/gTg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249018	55249019	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACCAT			P-0013705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	146	569	0	ENST00000275493.2:c.2319_2320insCATCAC	p.His773_Val774insHisHis	p.H773_V774insHH	ENST00000275493	NM_005228.3	772	-/CACCAT																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133730371	133730371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	92	552	0	ENST00000318560.5:c.437A>G	p.Asn146Ser	p.N146S	ENST00000318560	NM_005157.4	146	aAt/aGt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	200	359	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577085	7577086	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014823-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			785	275	574	0	ENST00000269305.4:c.852dup	p.Glu285ArgfsTer21	p.E285Rfs*21	ENST00000269305	NM_001126112.2	284	-/A																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	25	91	2				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	40	376	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244283	46244283	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	47	424	0	ENST00000334344.6:c.2377C>T	p.Gln793Ter	p.Q793*	ENST00000334344	NM_152641.2	793	Caa/Taa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44949985	44949985	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	77	222	0	ENST00000377967.4:c.3754G>C	p.Ala1252Pro	p.A1252P	ENST00000377967	NM_021140.2	1252	Gca/Cca																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47035945	47035946	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	33	303	0	ENST00000329236.7:c.396dupC	p.Lys133GlnfsTer6	p.K133Qfs*6	ENST00000329236	NM_001204466.1	131	gac/gaCc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187522574	187522575	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	41	296	0	ENST00000441802.2:c.11488dup	p.Ser3830PhefsTer19	p.S3830Ffs*19	ENST00000441802	NM_005245.3	3830	tca/tTca																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	47	257	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0012911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1383	141	724	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																												NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	92	523	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29917737	29917737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	71	528	0	ENST00000389048.3:c.931C>A	p.Arg311Ser	p.R311S	ENST00000389048	NM_004304.4	311	Cgt/Agt																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115706	8115707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGAC			P-0012911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	81	434	0	ENST00000346208.3:c.1054_1058dup	p.Leu354AspfsTer3	p.L354Dfs*3	ENST00000346208		351	aac/aaCAGACc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49427119	49427143	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTGCTGGACCAGGAGGCCTTGGT	AGCTGCTGGACCAGGAGGCCTTGGT	-			P-0013861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	65	784	0	ENST00000301067.7:c.11345_11369del	p.His3782ArgfsTer40	p.H3782Rfs*40	ENST00000301067	NM_003482.3	3782	cACCAAGGCCTCCTGGTCCAGCAGCTg/cg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3790401	3790402	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0013861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	47	517	0	ENST00000262367.5:c.4131dup	p.Arg1378ThrfsTer10	p.R1378Tfs*10	ENST00000262367	NM_004380.2	1377	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578448	7578461	+	frameshift_variant	Frame_Shift_Del	DEL	GCCATGGCGCGGAC	GCCATGGCGCGGAC	-			P-0013861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	75	580	0	ENST00000269305.4:c.469_482del	p.Val157HisfsTer19	p.V157Hfs*19	ENST00000269305	NM_001126112.2	157	GTCCGCGCCATGGCc/c																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11217230	11217230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	616	692	1	ENST00000361445.4:c.4448G>A	p.Cys1483Tyr	p.C1483Y	ENST00000361445	NM_004958.3	1483	tGc/tAc																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188320	10188320	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	268	527	1	ENST00000256474.2:c.463G>T	p.Val155Leu	p.V155L	ENST00000256474	NM_000551.3	155	Gtg/Ttg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52692298	52692298	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	248	730	1	ENST00000394830.3:c.562C>T	p.Gln188Ter	p.Q188*	ENST00000394830	NM_018313.4	188	Cag/Tag																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149460502	149460502	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	270	574	0	ENST00000286301.3:c.135T>A	p.Asn45Lys	p.N45K	ENST00000286301	NM_005211.3	45	aaT/aaA																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29912310	29912310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	267	613	0	ENST00000376809.5:c.929G>A	p.Gly310Asp	p.G310D	ENST00000376809	NM_002116.7	310	gGc/gAc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41101061	41101062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	298	684	0	ENST00000373198.4:c.1294dup	p.Gln432ProfsTer35	p.Q432Pfs*35	ENST00000373198	NM_133170.3	432	cag/cCag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	120	464	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	176	447	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	131	363	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591097	67591097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	86	401	0	ENST00000274335.5:c.1690A>G	p.Asn564Asp	p.N564D	ENST00000274335		564	Aac/Gac																																												NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	95	299	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																												NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	109	418	3	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																												NEWRECORD																																		
HIST1H3J	0	MSKCC	GRCh37	6	27858492	27858492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	247	957	0	ENST00000359303.2:c.79C>T	p.Arg27Cys	p.R27C	ENST00000359303	NM_003535.2	27	Cgc/Tgc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831026	72831026	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs61737017		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1256	237	886	1	ENST00000268489.5:c.5555A>C	p.Gln1852Pro	p.Q1852P	ENST00000268489	NM_006885.3	1852	cAg/cCg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	111	366	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176522720	176522720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	119	399	1	ENST00000292408.4:c.1817G>A	p.Arg606Gln	p.R606Q	ENST00000292408	NM_213647.1	606	cGg/cAg																																												NEWRECORD																																		
HIST1H3C	0	MSKCC	GRCh37	6	26045726	26045726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1561	268	984	4	ENST00000540144.1:c.88G>A	p.Ala30Thr	p.A30T	ENST00000540144	NM_003531.2	30	Gct/Act																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30671451	30671451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	186	604	0	ENST00000376406.3:c.5509G>A	p.Val1837Met	p.V1837M	ENST00000376406	NM_014641.2	1837	Gtg/Atg																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106513371	106513371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	115	479	2	ENST00000359195.3:c.2275G>A	p.Val759Ile	p.V759I	ENST00000359195	NM_002649.2	759	Gtc/Atc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151917715	151917715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	29	157	0	ENST00000262189.6:c.3605C>T	p.Pro1202Leu	p.P1202L	ENST00000262189	NM_170606.2	1202	cCa/cTa																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145738708	145738708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	56	437	0	ENST00000428558.2:c.2356G>A	p.Val786Met	p.V786M	ENST00000428558	NM_004260.3	786	Gtg/Atg																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87285694	87285694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	98	494	0	ENST00000277120.3:c.31G>A	p.Ala11Thr	p.A11T	ENST00000277120		11	Gcc/Acc																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87636210	87636210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	123	459	0	ENST00000277120.3:c.2375G>A	p.Arg792His	p.R792H	ENST00000277120		792	cGc/cAc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139401384	139401384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	92	361	1	ENST00000277541.6:c.3685G>A	p.Val1229Ile	p.V1229I	ENST00000277541	NM_017617.3	1229	Gtt/Att																																												NEWRECORD																																		
HRAS	0	MSKCC	GRCh37	11	532701	532701	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151229168		P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	204	687	3	ENST00000311189.7:c.505C>T	p.Arg169Trp	p.R169W	ENST00000311189		169	Cgg/Tgg																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102195752	102195752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1351	263	909	0	ENST00000263464.3:c.512C>T	p.Ala171Val	p.A171V	ENST00000263464	NM_001165.4	171	gCc/gTc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133237692	133237692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	141	611	0	ENST00000320574.5:c.2923C>T	p.Arg975Cys	p.R975C	ENST00000320574	NM_006231.2	975	Cgc/Tgc																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134933	41134933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1569	248	996	0	ENST00000379561.5:c.695G>A	p.Gly232Glu	p.G232E	ENST00000379561	NM_002015.3	232	gGa/gAa																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7122768	7122768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	57	506	1	ENST00000302850.5:c.3386C>T	p.Pro1129Leu	p.P1129L	ENST00000302850	NM_000208.2	1129	cCt/cTt																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15302277	15302277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	176	584	0	ENST00000263388.2:c.994C>T	p.Arg332Cys	p.R332C	ENST00000263388	NM_000435.2	332	Cgc/Tgc																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41725374	41725374	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	467	594	0	ENST00000301178.4:c.81delC	p.Arg28GlyfsTer70	p.R28Gfs*70	ENST00000301178	NM_021913.4	26	gCc/gc																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103524567	103524568	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	134	449	0	ENST00000355739.4:c.2705dup	p.Asn902LysfsTer7	p.N902Kfs*7	ENST00000355739	NM_000123.3	900	caa/cAaa																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135797261	135797261	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	80	496	2	ENST00000298552.3:c.608delT	p.Leu203CysfsTer7	p.L203Cfs*7	ENST00000298552	NM_001162426.1	203	tTg/tg																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61147770	61147771	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	93	351	0	ENST00000295025.8:c.1086dup	p.Glu363ArgfsTer8	p.E363Rfs*8	ENST00000295025	NM_002908.2	360	-/A																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47038526	47038526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	703	612	2	ENST00000329236.7:c.457C>T	p.Arg153Ter	p.R153*	ENST00000329236	NM_001204466.1	153	Cga/Tga																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41100980	41100980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	812	329	0	ENST00000373198.4:c.1376G>A	p.Arg459Gln	p.R459Q	ENST00000373198	NM_133170.3	459	cGg/cAg																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123215327	123215327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1068	151	541	0	ENST00000218089.9:c.2873C>A	p.Thr958Asn	p.T958N	ENST00000218089	NM_001042749.1	958	aCt/aAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578532	7578533	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0010134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	291	374	0	ENST00000269305.4:c.396_397dup	p.Met133ArgfsTer38	p.M133Rfs*38	ENST00000269305	NM_001126112.2	133	atg/aGAtg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	176	335	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	188	472	0	ENST00000269305.4:c.400T>A	p.Phe134Ile	p.F134I	ENST00000269305	NM_001126112.2	134	Ttt/Att																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101909981	101909982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	135	410	0	ENST00000374994.4:c.1302dup	p.Asp435Ter	p.D435*	ENST00000374994	NM_004612.2	434	tct/tcTt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	136	301	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	240	318	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553677	106553677	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	167	283	0	ENST00000369096.4:c.1642A>C	p.Asn548His	p.N548H	ENST00000369096	NM_001198.3	548	Aat/Cat																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41573492	41573492	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	205	336	0	ENST00000263253.7:c.5777T>G	p.Val1926Gly	p.V1926G	ENST00000263253	NM_001429.3	1926	gTg/gGg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44949068	44949068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	219	447	0	ENST00000377967.4:c.3629T>G	p.Phe1210Cys	p.F1210C	ENST00000377967	NM_021140.2	1210	tTt/tGt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971145	21971146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	48	81	0	ENST00000304494.5:c.212dup	p.Asn71LysfsTer49	p.N71Kfs*49	ENST00000304494	NM_000077.4	71	aac/aaAc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971145	21971146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	48	81	0	ENST00000304494.5:c.212dup	p.Asn71LysfsTer49	p.N71Kfs*49	ENST00000304494	NM_000077.4	71	aac/aaAc																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971145	21971146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	48	81	0	ENST00000304494.5:c.212dup	p.Asn71LysfsTer49	p.N71Kfs*49	ENST00000304494	NM_000077.4	71	aac/aaAc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0011029-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			277	690	478	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55270295	55270295	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011029-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1183	543	646	0	ENST00000275493.2:c.3248A>G	p.Asp1083Gly	p.D1083G	ENST00000275493	NM_005228.3	1083	gAc/gGc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76778879	76778880	+	stop_gained,inframe_insertion,splice_region_variant	Nonsense_Mutation	INS	-	-	TTA			P-0011029-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			250	324	521	0	ENST00000373344.5:c.6700-1_6700insTAA	p.Lys2233_Asp2234insTer	p.K2233_D2234ins*	ENST00000373344	NM_000489.3	2233	-/TAA																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	108	288	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																												NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3779211	3779211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783507		P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			124	24	110	0	ENST00000262367.5:c.5837del	p.Pro1946HisfsTer30	p.P1946Hfs*30	ENST00000262367	NM_004380.2	1946	cCa/ca																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198266476	198266476	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	99	323	0	ENST00000335508.6:c.2360T>A	p.Ile787Asn	p.I787N	ENST00000335508	NM_012433.2	787	aTt/aAt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248627	212248627	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	117	453	1	ENST00000342788.4:c.3640A>G	p.Asn1214Asp	p.N1214D	ENST00000342788	NM_005235.2	1214	Aac/Gac																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185146702	185146702	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	56	268	0	ENST00000265026.3:c.333C>G	p.Ser111Arg	p.S111R	ENST00000265026	NM_004721.4	111	agC/agG																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	28	423	0	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187549832	187549832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	50	427	1	ENST00000441802.2:c.4409C>T	p.Ala1470Val	p.A1470V	ENST00000441802	NM_005245.3	1470	gCg/gTg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	39002713	39002713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	48	438	0	ENST00000357387.3:c.316G>A	p.Ala106Thr	p.A106T	ENST00000357387	NM_152756.3	106	Gcg/Acg																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13935606	13935606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	94	239	0	ENST00000405192.2:c.1250G>A	p.Arg417His	p.R417H	ENST00000405192	NM_001163147.1	417	cGt/cAt																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97888839	97888839	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	127	458	0	ENST00000289081.3:c.868A>G	p.Ile290Val	p.I290V	ENST00000289081	NM_000136.2	290	Ata/Gta																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624305	89624305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	85	186	0	ENST00000371953.3:c.79T>C	p.Tyr27His	p.Y27H	ENST00000371953	NM_000314.4	27	Tat/Cat																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741834	17741834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	15	115	0	ENST00000250003.3:c.505G>A	p.Ala169Thr	p.A169T	ENST00000250003	NM_002478.4	169	Gcc/Acc																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32417886	32417886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	114	397	1	ENST00000332351.3:c.1166G>A	p.Arg389His	p.R389H	ENST00000332351	NM_024426.4	389	cGc/cAc																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	736952	736952	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	82	391	0	ENST00000314574.4:c.1147G>T	p.Gly383Cys	p.G383C	ENST00000314574	NM_005433.3	383	Ggt/Tgt																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15272501	15272501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	77	250	0	ENST00000263388.2:c.5938G>A	p.Ala1980Thr	p.A1980T	ENST00000263388	NM_000435.2	1980	Gcc/Acc																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31374341	31374341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	134	444	0	ENST00000328111.2:c.340C>T	p.Arg114Trp	p.R114W	ENST00000328111	NM_006892.3	114	Cgg/Tgg																																												NEWRECORD																																		
ICOSLG	0	MSKCC	GRCh37	21	45656792	45656792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	42	301	0	ENST00000407780.3:c.364T>C	p.Phe122Leu	p.F122L	ENST00000407780	NM_001283052.1	122	Ttc/Ctc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41513541	41513541	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			250	65	253	1	ENST00000263253.7:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000263253	NM_001429.3	149	Cag/Tag																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	30	336	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112154827	112154828	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	92	337	0	ENST00000257430.4:c.1100_1101del	p.Ser367CysfsTer10	p.S367Cfs*10	ENST00000257430	NM_000038.5	366	gaCTct/gact																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174674	112174675	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	93	371	0	ENST00000257430.4:c.3386dup	p.Leu1129PhefsTer6	p.L1129Ffs*6	ENST00000257430	NM_000038.5	1128	tct/tcTt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176171	112176171	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	176	421	0	ENST00000257430.4:c.4883del	p.Lys1628SerfsTer22	p.K1628Sfs*22	ENST00000257430	NM_000038.5	1627	cAa/ca																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	402096	402098	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	115	557	0	ENST00000399788.2:c.4693_4695del	p.Lys1565del	p.K1565del	ENST00000399788	NM_001042603.1	1565	AAG/-																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765242	66765243	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	58	155	0	ENST00000374690.3:c.271_273dup	p.Gln91dup	p.Q91dup	ENST00000374690	NM_000044.3	91	agg/agGCAg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	395	389	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0006668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	773	382	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142285073	142285073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	97	412	0	ENST00000350721.4:c.182C>T	p.Ser61Phe	p.S61F	ENST00000350721	NM_001184.3	61	tCt/tTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0006668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	204	321	0	ENST00000269305.4:c.376T>G	p.Tyr126Asp	p.Y126D	ENST00000269305	NM_001126112.2	126	Tac/Gac																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38285913	38285914	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCA			P-0006668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	77	464	0	ENST00000425967.3:c.495_497dupTGA	p.Asp166dup	p.D166dup	ENST00000425967	NM_001174067.1	166	gac/gaTGAc																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	266	413	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
VEGFA	0	MSKCC	GRCh37	6	43749769	43749769	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	346	796	0	ENST00000523873.1:c.622A>C	p.Asn208His	p.N208H	ENST00000523873		208	Aac/Cac																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117665317	117665317	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	192	538	0	ENST00000368508.3:c.4430G>A	p.Trp1477Ter	p.W1477*	ENST00000368508	NM_002944.2	1477	tGg/tAg																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118367013	118367013	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	182	584	0	ENST00000534358.1:c.5595C>G	p.Asn1865Lys	p.N1865K	ENST00000534358	NM_005933.3	1865	aaC/aaG																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37682254	37682254	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	422	523	2	ENST00000447079.4:c.3445C>T	p.Gln1149Ter	p.Q1149*	ENST00000447079	NM_015083.1	1149	Cag/Tag																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	313	374	0	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577514	7577515	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGA			P-0009561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	321	490	0	ENST00000269305.4:c.764_766dupTCA	p.Ile255dup	p.I255dup	ENST00000269305	NM_001126112.2	255	aca/aTCAca																																												NEWRECORD																																		
DCUN1D1	0	MSKCC	GRCh37	3	182683426	182683426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	53	435	0	ENST00000292782.4:c.119C>T	p.Ala40Val	p.A40V	ENST00000292782	NM_020640.2	40	gCa/gTa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118343180	118343180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	65	632	0	ENST00000534358.1:c.1306C>G	p.Pro436Ala	p.P436A	ENST00000534358	NM_005933.3	436	Cct/Gct																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248284	59248285	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	20	94	0	ENST00000371222.2:c.458dup	p.Ser154GlnfsTer156	p.S154Qfs*156	ENST00000371222	NM_002228.3	153	ggc/ggGc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	540	299	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212543850	212543850	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	52	184	0	ENST00000342788.4:c.1549C>G	p.Pro517Ala	p.P517A	ENST00000342788	NM_005235.2	517	Cca/Gca																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41275738	41275738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	116	221	0	ENST00000349496.5:c.1633C>A	p.Gln545Lys	p.Q545K	ENST00000349496	NM_001904.3	545	Cag/Aag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112157650	112157650	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	146	241	0	ENST00000257430.4:c.1370C>G	p.Ser457Ter	p.S457*	ENST00000257430	NM_000038.5	457	tCa/tGa																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50480426	50480426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	81	172	0	ENST00000394963.4:c.388G>A	p.Asp130Asn	p.D130N	ENST00000394963	NM_003076.4	130	Gac/Aac																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11094984	11094984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	31	435	0	ENST00000344626.4:c.157G>A	p.Gly53Arg	p.G53R	ENST00000344626	NM_003072.3	53	Gga/Aga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175191	112175192	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000739-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			103	23	117	0	ENST00000257430.4:c.3901dup	p.Thr1301AsnfsTer14	p.T1301Nfs*14	ENST00000257430	NM_000038.5	1300	-/A																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	230	379	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	119	262	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112641	115112641	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	165	238	0	ENST00000257566.3:c.1100-1G>A		p.X367_splice	ENST00000257566	NM_016569.3	367																																													NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99434825	99434825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	76	170	0	ENST00000268035.6:c.912G>A	p.Met304Ile	p.M304I	ENST00000268035	NM_000875.3	304	atG/atA																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112449	115112450	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	237	203	0	ENST00000257566.3:c.1290dup	p.Ala431SerfsTer8	p.A431Sfs*8	ENST00000257566	NM_016569.3	430	-/A																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248589	59248590	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCAC			P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	144	378	0	ENST00000371222.2:c.153_154insGTGGG	p.His52ValfsTer30	p.H52Vfs*30	ENST00000371222	NM_002228.3	51	-/GTGGG																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57750460	57750461	+	stop_gained	Nonsense_Mutation	DNP	TT	TT	AA			P-0004314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	230	462	0	ENST00000274289.3:c.2007_2008inv	p.Leu669_Lys670delinsPheTer	p.L669_K670delinsF*	ENST00000274289	NM_006622.3	669	ttAAaa/ttTTaa																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	84	299	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	46	246	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108154953	108154953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	17	137	0	ENST00000278616.4:c.3747-1G>T		p.X1249_splice	ENST00000278616	NM_000051.3	1249																																													NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100999758	100999758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2152	124	563	3	ENST00000325455.5:c.44C>T	p.Ala15Val	p.A15V	ENST00000325455	NM_001202474.3	15	gCg/gTg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78938120	78938120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	190	371	1	ENST00000306801.3:c.3998G>A	p.Arg1333His	p.R1333H	ENST00000306801	NM_020761.2	1333	cGt/cAt																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30074311	30074311	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	30	183	0	ENST00000338641.4:c.1573A>T	p.Lys525Ter	p.K525*	ENST00000338641	NM_000268.3	525	Aaa/Taa																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12871059	12871060	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGGTGCCTGC			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	77	183	0	ENST00000228872.4:c.295_305dup	p.Gln104ArgfsTer19	p.Q104Rfs*19	ENST00000228872	NM_004064.3	96	aaa/aAAGGTGCCTGCaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577061	7577062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	169	417	0	ENST00000269305.4:c.876dup	p.Gly293ArgfsTer13	p.G293Rfs*13	ENST00000269305	NM_001126112.2	292	-/A																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000319-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	157	491	1	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412375	139412375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000319-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			30	27	238	0	ENST00000277541.6:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000277541	NM_017617.3	424	Gag/Aag																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000319-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	90	402	0	ENST00000371953.3:c.518G>C	p.Arg173Pro	p.R173P	ENST00000371953	NM_000314.4	173	cGc/cCc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431639	49431639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000319-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	13	430	0	ENST00000301067.7:c.9500G>A	p.Arg3167Gln	p.R3167Q	ENST00000301067	NM_003482.3	3167	cGg/cAg																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121416663	121416663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000319-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			47	14	491	0	ENST00000257555.6:c.92G>A	p.Gly31Asp	p.G31D	ENST00000257555		31	gGt/gAt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29686017	29686017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000319-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	51	338	0	ENST00000358273.4:c.8144C>A	p.Ala2715Glu	p.A2715E	ENST00000358273	NM_001042492.2	2715	gCa/gAa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187540225	187540226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000319-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			153	47	606	0	ENST00000441802.2:c.7514dupC	p.Pro2506SerfsTer29	p.P2506Sfs*29	ENST00000441802	NM_005245.3	2505	gct/gcCt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630745	187630757	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGTCTCCGGAA	ACTGTCTCCGGAA	-			P-0000319-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	25	694	0	ENST00000441802.2:c.225_237delTTCCGGAGACAGT	p.Ser76LysfsTer17	p.S76Kfs*17	ENST00000441802	NM_005245.3	75	gtTTCCGGAGACAGT/gt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	49	347	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115972	8115973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	33	261	0	ENST00000346208.3:c.1320dup	p.Ala441ArgfsTer66	p.A441Rfs*66	ENST00000346208		440	acc/aCcc																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106180835	106180835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	94	586	0	ENST00000380013.4:c.3863G>T	p.Gly1288Val	p.G1288V	ENST00000380013	NM_001127208.2	1288	gGt/gTt																																												NEWRECORD																																		
RAB35	0	MSKCC	GRCh37	12	120554444	120554444	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	42	295	0	ENST00000229340.5:c.11A>G	p.Asp4Gly	p.D4G	ENST00000229340	NM_006861.6	4	gAc/gGc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	143	521	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66197710	66197710	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs147053536		P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	52	499	0	ENST00000273854.3:c.2989G>T	p.Val997Leu	p.V997L	ENST00000273854	NM_004439.5	997	Gtg/Ttg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045533	47045533	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	63	552	0	ENST00000329236.7:c.2266A>T	p.Lys756Ter	p.K756*	ENST00000329236	NM_001204466.1	756	Aag/Tag																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371984	55371985	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	199	258	0	ENST00000297316.4:c.676_677del	p.Pro226AlafsTer138	p.P226Afs*138	ENST00000297316	NM_022454.3	225	tCC/t																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61712946	61712947	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	71	761	0	ENST00000401558.2:c.2464dup	p.Ile822AsnfsTer3	p.I822Nfs*3	ENST00000401558	NM_003400.3	822	ata/aAta																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108202262	108202271	+	frameshift_variant	Frame_Shift_Del	DEL	GATTTCATGA	GATTTCATGA	-			P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	106	427	0	ENST00000278616.4:c.7607_7616del	p.Gly2536GlufsTer6	p.G2536Efs*6	ENST00000278616	NM_000051.3	2536	gGATTTCATGAa/ga																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88576132	88576133	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0013338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	67	624	1	ENST00000360948.2:c.1540_1541delinsAA	p.Pro514Asn	p.P514N	ENST00000360948	NM_001012338.2	514	CCc/AAc																																												NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0006447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	144	392	1	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68849453	68849454	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0006447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	163	455	0	ENST00000261769.5:c.1358_1359del	p.His453ArgfsTer10	p.H453Rfs*10	ENST00000261769	NM_004360.3	452	ctACac/ctac																																												NEWRECORD																																		
MUTYH	0	MSKCC	GRCh37	1	45798353	45798353	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	156	459	0	ENST00000372115.3:c.541G>T	p.Glu181Ter	p.E181*	ENST00000372115	NM_001048171.1	181	Gag/Tag																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25470474	25470474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	53	244	0	ENST00000264709.3:c.1000G>A	p.Gly334Ser	p.G334S	ENST00000264709	NM_175629.2	334	Ggc/Agc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187554897	187554897	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	174	641	0	ENST00000441802.2:c.4264A>T	p.Lys1422Ter	p.K1422*	ENST00000441802	NM_005245.3	1422	Aag/Tag																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176518056	176518056	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	131	376	0	ENST00000292408.4:c.554T>G	p.Leu185Arg	p.L185R	ENST00000292408	NM_213647.1	185	cTt/cGt																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95562895	95562895	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	70	238	0	ENST00000343455.3:c.4362T>G	p.Asp1454Glu	p.D1454E	ENST00000343455	NM_177438.2	1454	gaT/gaG																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52724361	52724361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	86	256	1	ENST00000322088.6:c.1493G>A	p.Arg498His	p.R498H	ENST00000322088	NM_014225.5	498	cGc/cAc																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48652530	48652530	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	54	159	0	ENST00000376670.3:c.1201C>A	p.Pro401Thr	p.P401T	ENST00000376670	NM_002049.3	401	Ccc/Acc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47127802	47127866	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTCTTTCATGGGGGAAGGGAGACACGATGCAGAGCATTGGGAGGCAATATCAGAATATTACAAA	GTTCTTTCATGGGGGAAGGGAGACACGATGCAGAGCATTGGGAGGCAATATCAGAATATTACAAA	-			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	36	124	0	ENST00000409792.3:c.5278-62_5280del		p.X1760_splice	ENST00000409792	NM_014159.6	1760																																													NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32906837	32906837	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	GCCAGG			P-0010464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	97	458	0	ENST00000380152.3:c.1222delinsGCCAGG	p.Met408AlafsTer24	p.M408Afs*24	ENST00000380152		408	Atg/GCCAGGtg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	295	662	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																												NEWRECORD																																		
STK40	0	MSKCC	GRCh37	1	36820862	36820862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	63	624	0	ENST00000373129.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000373129	NM_032017.1	172	aGg/aAg																																												NEWRECORD																																		
NUF2	0	MSKCC	GRCh37	1	163310151	163310154	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGA	TAGA	-			P-0014219-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	69	458	0	ENST00000271452.3:c.607_610del		p.X203_splice	ENST00000271452	NM_145697.2	203																																													NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0002088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	580	424	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																												NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187446269	187446270	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	183	269	0	ENST00000232014.4:c.1418dupC	p.Lys474GlufsTer26	p.K474Efs*26	ENST00000232014	NM_001130845.1	473	ccg/ccCg																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116423449	116423453	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGC	GGTGC	-			P-0002088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	297	427	0	ENST00000397752.3:c.3724_3728delGGTGC	p.Gly1242LysfsTer43	p.G1242Kfs*43	ENST00000397752	NM_000245.2	1242	GGTGCa/a																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115109946	115109946	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002088-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	159	223	0	ENST00000257566.3:c.1932delC	p.Ile645SerfsTer244	p.I645Sfs*244	ENST00000257566	NM_016569.3	644	tcC/tc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001804-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	55	516	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118373209	118373209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001804-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	52	599	0	ENST00000534358.1:c.6602C>T	p.Ser2201Phe	p.S2201F	ENST00000534358	NM_005933.3	2201	tCt/tTt																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65330486	65330487	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001804-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	57	506	0	ENST00000342505.4:c.1159_1160insT	p.Gln387LeufsTer66	p.Q387Lfs*66	ENST00000342505	NM_002227.2	387	cag/cTag																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266092	41266092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001910-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	349	534	0	ENST00000349496.5:c.89A>C	p.Tyr30Ser	p.Y30S	ENST00000349496	NM_001904.3	30	tAc/tCc																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001910-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			492	353	544	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106157735	106157735	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001910-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	320	484	0	ENST00000380013.4:c.2636T>A	p.Leu879His	p.L879H	ENST00000380013	NM_001127208.2	879	cTt/cAt																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115114181	115114182	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCTG			P-0001910-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	324	594	0	ENST00000257566.3:c.1031_1035dup	p.Phe346GlnfsTer17	p.F346Qfs*17	ENST00000257566	NM_016569.3	345	-/CAGCT																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	376	536	0	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1265	472	689	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023211	27023227	+	frameshift_variant	Frame_Shift_Del	DEL	ACGCGGGCCCTAGGCCC	ACGCGGGCCCTAGGCCC	CGCGGGCCTA			P-0014913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	170	282	2	ENST00000324856.7:c.317_333delinsCGCGGGCCTA	p.Asn106ThrfsTer4	p.N106Tfs*4	ENST00000324856	NM_006015.4	106	aACGCGGGCCCTAGGCCC/aCGCGGGCCTA																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434384	49434384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	157	640	0	ENST00000301067.7:c.7169C>T	p.Pro2390Leu	p.P2390L	ENST00000301067	NM_003482.3	2390	cCg/cTg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120148	70120148	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	162	227	0	ENST00000245479.2:c.1150A>G	p.Thr384Ala	p.T384A	ENST00000245479	NM_000346.3	384	Acg/Gcg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52693373	52693373	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014913-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	273	615	0	ENST00000322088.6:c.24C>G	p.Asp8Glu	p.D8E	ENST00000322088	NM_014225.5	8	gaC/gaG																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188251	10188252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	199	780	0	ENST00000256474.2:c.397dup	p.Thr133AsnfsTer2	p.T133Nfs*2	ENST00000256474	NM_000551.3	132	caa/cAaa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47155495	47155495	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	77	435	0	ENST00000409792.3:c.4587-1G>T		p.X1529_splice	ENST00000409792	NM_014159.6	1529																																													NEWRECORD																																		
NKX3-1	0	MSKCC	GRCh37	8	23540157	23540164	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCGGG	GGCGCGGG	-			P-0005958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	55	187	0	ENST00000380871.4:c.239_246del	p.Pro80ArgfsTer25	p.P80Rfs*25	ENST00000380871	NM_006167.3	80	cCCCGCGCC/c																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52598078	52598080	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0005958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	121	689	0	ENST00000394830.3:c.3786_3788del	p.Glu1262_Ile1263delinsAsp	p.E1262_I1263delinsD	ENST00000394830	NM_018313.4	1262	gaAATt/gat																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162745620	162745620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	64	500	2	ENST00000367921.3:c.2035G>A	p.Val679Ile	p.V679I	ENST00000367921	NM_006182.2	679	Gta/Ata																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	187	768	3	ENST00000346208.3:c.708dupC	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100998753	100998753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	340	672	0	ENST00000325455.5:c.1049C>T	p.Ser350Phe	p.S350F	ENST00000325455	NM_001202474.3	350	tCc/tTc																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061218	38061230	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGTTCTCGAAC	GCCGTTCTCGAAC	-			P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	300	560	0	ENST00000250448.2:c.759_771del	p.Met253IlefsTer64	p.M253Ifs*64	ENST00000250448	NM_004496.3	253	atGTTCGAGAACGGC/at																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061836	38061862	+	inframe_deletion	In_Frame_Del	DEL	GTTCATGGTCATGTAGGTGTTCATGGA	GTTCATGGTCATGTAGGTGTTCATGGA	-			P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1361	394	1121	3	ENST00000250448.2:c.127_153del	p.Ser43_Asn51del	p.S43_N51del	ENST00000250448	NM_004496.3	43	TCCATGAACACCTACATGACCATGAAC/-																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	520	791	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151873587	151873588	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014235-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			903	77	537	0	ENST00000262189.6:c.8950dup	p.Ser2984PhefsTer18	p.S2984Ffs*18	ENST00000262189	NM_170606.2	2984	tct/tTct																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692922	89692922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	28	367	0	ENST00000371953.3:c.406T>C	p.Cys136Arg	p.C136R	ENST00000371953	NM_000314.4	136	Tgt/Cgt																																												NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	59	512	0	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47144835	47144835	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	203	500	0	ENST00000409792.3:c.4917+1G>A		p.X1639_splice	ENST00000409792	NM_014159.6	1639																																													NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41573524	41573524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	216	532	0	ENST00000263253.7:c.5809G>A	p.Glu1937Lys	p.E1937K	ENST00000263253	NM_001429.3	1937	Gag/Aag																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52442506	52442507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	131	367	0	ENST00000460680.1:c.238dup	p.Met80AsnfsTer46	p.M80Nfs*46	ENST00000460680	NM_004656.3	80	atg/aAtg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	68	323	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65544640	65544640	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	71	414	0	ENST00000358664.4:c.286G>T	p.Glu96Ter	p.E96*	ENST00000358664	NM_002382.4	96	Gag/Tag																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	69	492	1	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156845987	156845987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	33	393	0	ENST00000524377.1:c.1617G>C	p.Met539Ile	p.M539I	ENST00000524377	NM_002529.3	539	atG/atC																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170652	112170652	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	43	397	0	ENST00000257430.4:c.1748C>G	p.Ser583Ter	p.S583*	ENST00000257430	NM_000038.5	583	tCa/tGa																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94120241	94120241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	86	719	0	ENST00000369303.4:c.810G>C	p.Gln270His	p.Q270H	ENST00000369303	NM_004440.3	270	caG/caC																																												NEWRECORD																																		
LMO1	0	MSKCC	GRCh37	11	8252049	8252049	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	47	303	0	ENST00000335790.3:c.28G>T	p.Val10Leu	p.V10L	ENST00000335790	NM_002315.2	10	Gtg/Ttg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7573009	7573009	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	76	446	0	ENST00000269305.4:c.1101-1G>A		p.X367_splice	ENST00000269305	NM_001126112.2	367																																													NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44969485	44969485	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	48	244	0	ENST00000377967.4:c.4167A>T	p.Gln1389His	p.Q1389H	ENST00000377967	NM_021140.2	1389	caA/caT																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137519590	137519590	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	44	515	0	ENST00000367739.4:c.1048del	p.Ser350LeufsTer3	p.S350Lfs*3	ENST00000367739	NM_000416.2	350	Tct/ct																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11129694	11129695	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	76	407	0	ENST00000344626.4:c.2501dup	p.Tyr834Ter	p.Y834*	ENST00000344626	NM_003072.3	834	tac/tAac																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974817	21974818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGCTCCATG			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	22	116	0	ENST00000304494.5:c.-1_9dup	p.Ala4HisfsTer14	p.A4Hfs*14	ENST00000304494	NM_000077.4	3	-/CATGGAGCCG																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974817	21974818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGCTCCATG			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	22	116	0	ENST00000304494.5:c.-1_9dup	p.Ala4HisfsTer14	p.A4Hfs*14	ENST00000304494	NM_000077.4	3	-/CATGGAGCCG																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55133878	55133880	+	missense_variant	Missense_Mutation	ONP	CCA	CCA	ACC			P-0009178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	53	391	0	ENST00000257290.5:c.1091_1093delinsACC	p.Thr364_Thr365delinsAsnPro	p.T364_T365delinsNP	ENST00000257290	NM_006206.4	364	aCCAct/aACCct																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	57	258	1	ENST00000397062.3:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000397062	NM_006164.4	29	Gat/Tat																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29910355	29910356	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCGT			P-0006251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	62	488	0	ENST00000376809.5:c.27_28insGTTC	p.Leu10ValfsTer90	p.L10Vfs*90	ENST00000376809	NM_002116.7	9	ctc/cTCGTtc																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30320284	30320284	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	60	553	0	ENST00000322652.5:c.1225del	p.Asp409IlefsTer18	p.D409Ifs*18	ENST00000322652	NM_015355.2	409	Gat/at																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	66	344	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	42	359	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	76	346	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	118	534	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	45	413	1	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																												NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	47	407	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	42	380	2	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																												NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	96	385	3	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	92	661	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	33	392	0	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	16	320	0	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																												NEWRECORD																																		
MCL1	0	MSKCC	GRCh37	1	150551677	150551679	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	72	204	0	ENST00000369026.2:c.328_330del	p.Glu110del	p.E110del	ENST00000369026	NM_021960.4	110	GAG/-																																												NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	64	386	3	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37884218	37884218	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	98	430	0	ENST00000269571.5:c.3694delG	p.Ala1232LeufsTer70	p.A1232Lfs*70	ENST00000269571		1230	cGg/cg																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94120326	94120326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	58	610	2	ENST00000369303.4:c.725C>T	p.Ala242Val	p.A242V	ENST00000369303	NM_004440.3	242	gCg/gTg																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	54	308	1	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																												NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63850704	63850705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	50	390	3	ENST00000279873.7:c.1489dup	p.Ile497AsnfsTer31	p.I497Nfs*31	ENST00000279873	NM_032199.2	494	-/A																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411071	63411071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	48	272	0	ENST00000330258.3:c.2096G>A	p.Arg699His	p.R699H	ENST00000330258	NM_152424.3	699	cGt/cAt																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	61	360	0	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112164664	112164664	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	23	188	0	ENST00000257430.4:c.1742delA	p.Lys581ArgfsTer9	p.K581Rfs*9	ENST00000257430	NM_000038.5	580	Aaa/aa																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120480538	120480538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	56	453	0	ENST00000256646.2:c.3279G>T	p.Trp1093Cys	p.W1093C	ENST00000256646	NM_024408.3	1093	tgG/tgT																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155870264	155870264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	122	619	0	ENST00000368323.3:c.575C>T	p.Ala192Val	p.A192V	ENST00000368323	NM_006912.5	192	gCc/gTc																																												NEWRECORD																																		
CXCR4	0	MSKCC	GRCh37	2	136872663	136872663	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	142	748	0	ENST00000241393.3:c.835A>G	p.Thr279Ala	p.T279A	ENST00000241393	NM_003467.2	279	Act/Gct																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202151314	202151314	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	41	443	0	ENST00000358485.4:c.1614T>A	p.Asp538Glu	p.D538E	ENST00000358485	NM_001080125.1	538	gaT/gaA																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37035151	37035151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	97	188	0	ENST00000231790.2:c.113A>G	p.Asn38Ser	p.N38S	ENST00000231790	NM_000249.3	38	aAc/aGc																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266190	41266190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	36	381	0	ENST00000349496.5:c.187C>A	p.Leu63Met	p.L63M	ENST00000349496	NM_001904.3	63	Ctg/Atg																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143094943	143094943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	36	375	0	ENST00000262992.4:c.1201T>C	p.Tyr401His	p.Y401H	ENST00000262992	NM_001101669.1	401	Tac/Cac																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117866579	117866579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	74	768	0	ENST00000297338.2:c.1066C>T	p.Pro356Ser	p.P356S	ENST00000297338	NM_006265.2	356	Ccc/Tcc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8319965	8319965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs141403124		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	23	292	0	ENST00000356435.5:c.5536G>A	p.Ala1846Thr	p.A1846T	ENST00000356435		1846	Gcg/Acg																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21549230	21549230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113238499		P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	87	703	0	ENST00000382592.4:c.3046G>A	p.Glu1016Lys	p.E1016K	ENST00000382592	NM_014572.2	1016	Gaa/Aaa																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56865792	56865792	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	83	732	1	ENST00000308159.5:c.1124A>G	p.Tyr375Cys	p.Y375C	ENST00000308159	NM_014669.4	375	tAc/tGc																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17127424	17127424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	47	357	1	ENST00000285071.4:c.430G>A	p.Gly144Arg	p.G144R	ENST00000285071	NM_144997.5	144	Gga/Aga																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56436098	56436098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	134	521	1	ENST00000407977.2:c.1039G>A	p.Gly347Ser	p.G347S	ENST00000407977		347	Ggc/Agc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5210796	5210796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	42	389	0	ENST00000357368.4:c.5255C>T	p.Ala1752Val	p.A1752V	ENST00000357368	NM_002850.3	1752	gCg/gTg																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10265313	10265313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	57	420	0	ENST00000340748.4:c.1733C>T	p.Thr578Ile	p.T578I	ENST00000340748		578	aCa/aTa																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11118683	11118683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	124	528	0	ENST00000344626.4:c.2107G>A	p.Ala703Thr	p.A703T	ENST00000344626	NM_003072.3	703	Gcg/Acg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52729010	52729010	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	53	434	0	ENST00000322088.6:c.1702A>G	p.Thr568Ala	p.T568A	ENST00000322088	NM_014225.5	568	Acc/Gcc																																												NEWRECORD																																		
SH2D1A	0	MSKCC	GRCh37	X	123504029	123504029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	13	186	0	ENST00000371139.4:c.205G>A	p.Ala69Thr	p.A69T	ENST00000371139	NM_001114937.2	69	Gca/Aca																																												NEWRECORD																																		
BBC3	0	MSKCC	GRCh37	19	47725019	47725019	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	135	573	0	ENST00000449228.1:c.725del	p.Gly242AlafsTer48	p.G242Afs*48	ENST00000449228	NM_001127240.2	242	gGc/gc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170660	112170660	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	38	323	0	ENST00000257430.4:c.1759del	p.Ser587AlafsTer3	p.S587Afs*3	ENST00000257430	NM_000038.5	586	Aaa/aa																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5240271	5240271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	62	483	0	ENST00000357368.4:c.1643del	p.Pro548ArgfsTer37	p.P548Rfs*37	ENST00000357368	NM_002850.3	548	cCg/cg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52620442	52620442	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	43	355	0	ENST00000394830.3:c.3311del	p.Lys1104ArgfsTer30	p.K1104Rfs*30	ENST00000394830	NM_018313.4	1104	aAg/ag																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220437288	220437288	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	100	712	2	ENST00000243786.2:c.197del	p.Gly66AlafsTer61	p.G66Afs*61	ENST00000243786	NM_002191.3	64	ctG/ct																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991709	72991711	+	inframe_deletion	In_Frame_Del	DEL	GCA	GCA	-			P-0011068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	36	249	0	ENST00000268489.5:c.2334_2336delTGC	p.Ala784del	p.A784del	ENST00000268489	NM_006885.3	778	gcTGCg/gcg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187554965	187554965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	599	457	0	ENST00000441802.2:c.4196A>G	p.Asp1399Gly	p.D1399G	ENST00000441802	NM_005245.3	1399	gAc/gGc																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99456497	99456497	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45553041		P-0012189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	276	296	1	ENST00000268035.6:c.1814G>A	p.Arg605His	p.R605H	ENST00000268035	NM_000875.3	605	cGc/cAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	592	695	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	473	593	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa																																												NEWRECORD																																		
MALT1	0	MSKCC	GRCh37	18	56402459	56402459	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	326	524	0	ENST00000348428.3:c.1501A>C	p.Ile501Leu	p.I501L	ENST00000348428	NM_006785.3	501	Atc/Ctc																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48010530	48010548	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGGCCTGGGCCCAGGCC	CTGGGCCTGGGCCCAGGCC	-			P-0012189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	401	242	0	ENST00000234420.5:c.160_178del	p.Gly54TrpfsTer21	p.G54Wfs*21	ENST00000234420	NM_000179.2	53	gCTGGGCCTGGGCCCAGGCCc/gc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974808	21974809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	211	205	0	ENST00000304494.5:c.18dup	p.Ser7GlufsTer8	p.S7Efs*8	ENST00000304494	NM_000077.4	6	-/G																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974808	21974809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	211	205	0	ENST00000304494.5:c.18dup	p.Ser7GlufsTer8	p.S7Efs*8	ENST00000304494	NM_000077.4	6	-/G																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187524468	187524469	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0012189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	609	377	0	ENST00000441802.2:c.11211_11212del	p.Cys3738ArgfsTer12	p.C3738Rfs*12	ENST00000441802	NM_005245.3	3737	ctCTgc/ctgc																																												NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	335	461	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61149036	61149036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	111	399	1	ENST00000295025.8:c.1226C>T	p.Ser409Phe	p.S409F	ENST00000295025	NM_002908.2	409	tCt/tTt																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288194	33288194	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	90	424	0	ENST00000374542.5:c.1214C>G	p.Ser405Cys	p.S405C	ENST00000374542	NM_001141970.1	405	tCt/tGt																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	134	495	1	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																													NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458042	120458042	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	101	477	0	ENST00000256646.2:c.7303G>C	p.Asp2435His	p.D2435H	ENST00000256646	NM_024408.3	2435	Gac/Cac																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206661320	206661320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	149	636	0	ENST00000367120.3:c.1686G>A	p.Met562Ile	p.M562I	ENST00000367120	NM_014002.3	562	atG/atA																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64137170	64137170	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	111	572	0	ENST00000334205.4:c.1603-1G>A		p.X535_splice	ENST00000334205	NM_003942.2	535																																													NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105242132	105242132	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	119	538	0	ENST00000349310.3:c.292G>T	p.Glu98Ter	p.E98*	ENST00000349310	NM_001014432.1	98	Gag/Tag																																												NEWRECORD																																		
TP53BP1	0	MSKCC	GRCh37	15	43748606	43748606	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	193	1060	0	ENST00000382044.4:c.2200C>G	p.Gln734Glu	p.Q734E	ENST00000382044	NM_001141980.1	734	Caa/Gaa																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68835617	68835629	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCTCGACACCC	TCCCTCGACACCC	-			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			226	258	596	0	ENST00000261769.5:c.208_220del	p.Ser70AspfsTer9	p.S70Dfs*9	ENST00000261769	NM_004360.3	70	TCCCTCGACACCCga/ga																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81929489	81929489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	154	617	0	ENST00000359376.3:c.1150G>A	p.Asp384Asn	p.D384N	ENST00000359376	NM_002661.3	384	Gac/Aac																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29585516	29585516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			224	36	158	0	ENST00000358273.4:c.4328C>T	p.Ser1443Leu	p.S1443L	ENST00000358273	NM_001042492.2	1443	tCa/tTa																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252852	36252853	+	splice_donor_variant	Splice_Site	INS	-	-	CCTCTT			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	124	343	0	ENST00000300305.3:c.504_508+1dup		p.X168_splice	ENST00000300305		168																																													NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55564515	55564515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	103	510	3	ENST00000288135.5:c.403C>T	p.Arg135Cys	p.R135C	ENST00000288135	NM_000222.2	135	Cgc/Tgc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630870	187630870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	139	591	1	ENST00000441802.2:c.112G>A	p.Glu38Lys	p.E38K	ENST00000441802	NM_005245.3	38	Gag/Aag																																												NEWRECORD																																		
MSH3	0	MSKCC	GRCh37	5	79961067	79961067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	158	556	0	ENST00000265081.6:c.464C>G	p.Ser155Cys	p.S155C	ENST00000265081	NM_002439.4	155	tCt/tGt																																												NEWRECORD																																		
AGO2	0	MSKCC	GRCh37	8	141542624	141542624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	180	728	0	ENST00000220592.5:c.2362C>T	p.His788Tyr	p.H788Y	ENST00000220592	NM_012154.3	788	Cac/Tac																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135776983	135776983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014907-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	97	395	0	ENST00000298552.3:c.2495C>T	p.Ser832Phe	p.S832F	ENST00000298552	NM_001162426.1	832	tCc/tTc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	175	245	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	417	172	0	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178948100	178948100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	22	220	0	ENST00000263967.3:c.2872C>A	p.Gln958Lys	p.Q958K	ENST00000263967	NM_006218.2	958	Cag/Aag																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12011152	12011152	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	180	247	0	ENST00000353533.5:c.559A>T	p.Lys187Ter	p.K187*	ENST00000353533	NM_003010.3	187	Aag/Tag																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16004618	16004619	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	218	350	0	ENST00000268712.3:c.2635dup	p.Ser879PhefsTer8	p.S879Ffs*8	ENST00000268712	NM_006311.3	879	tcc/tTcc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70349241	70349242	+	missense_variant	Missense_Mutation	DNP	GA	GA	CT			P-0004196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	99	465	0	ENST00000374080.3:c.3653_3654delinsCT	p.Gly1218Ala	p.G1218A	ENST00000374080		1218	gGA/gCT																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717777	89717777	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0014571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	140	244	0	ENST00000371953.3:c.801+1G>T		p.X267_splice	ENST00000371953	NM_000314.4	267																																													NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	346	481	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87570325	87570325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	331	521	0	ENST00000277120.3:c.2065G>A	p.Val689Met	p.V689M	ENST00000277120		689	Gtg/Atg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49427878	49427879	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1025	191	517	0	ENST00000301067.7:c.10711dup	p.Gln3571ProfsTer20	p.Q3571Pfs*20	ENST00000301067	NM_003482.3	3571	cag/cCag																																												NEWRECORD																																		
TP53BP1	0	MSKCC	GRCh37	15	43700219	43700219	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014571-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	220	475	0	ENST00000382044.4:c.5668delC	p.Leu1890TrpfsTer9	p.L1890Wfs*9	ENST00000382044	NM_001141980.1	1890	Ctg/tg																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	349	285	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	105	135	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	193	247	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9780197	9780197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	135	304	1	ENST00000377346.4:c.1367C>T	p.Thr456Met	p.T456M	ENST00000377346	NM_005026.3	456	aCg/aTg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16199610	16199610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	65	131	0	ENST00000375759.3:c.383G>A	p.Arg128His	p.R128H	ENST00000375759	NM_015001.2	128	cGt/cAt																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47702265	47702265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	173	328	0	ENST00000233146.2:c.1861C>T	p.Arg621Ter	p.R621*	ENST00000233146	NM_000251.2	621	Cga/Tga																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212285314	212285314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	181	275	0	ENST00000342788.4:c.2987C>A	p.Pro996His	p.P996H	ENST00000342788	NM_005235.2	996	cCc/cAc																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215646033	215646033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	202	297	0	ENST00000260947.4:c.565G>A	p.Ala189Thr	p.A189T	ENST00000260947	NM_000465.2	189	Gca/Aca																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47098586	47098586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	161	241	0	ENST00000409792.3:c.6688G>A	p.Ala2230Thr	p.A2230T	ENST00000409792	NM_014159.6	2230	Gca/Aca																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52437440	52437440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	94	115	0	ENST00000460680.1:c.1721C>T	p.Ala574Val	p.A574V	ENST00000460680	NM_004656.3	574	gCg/gTg																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119642254	119642254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	203	257	0	ENST00000316626.5:c.443G>A	p.Arg148Gln	p.R148Q	ENST00000316626		148	cGa/cAa																																												NEWRECORD																																		
FOXL2	0	MSKCC	GRCh37	3	138664460	138664460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	89	105	0	ENST00000330315.3:c.1105G>A	p.Ala369Thr	p.A369T	ENST00000330315	NM_023067.3	369	Gcg/Acg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177626	56177626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	185	262	0	ENST00000399503.3:c.2599G>A	p.Glu867Lys	p.E867K	ENST00000399503	NM_005921.1	867	Gaa/Aaa																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2969697	2969697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	85	220	0	ENST00000396946.4:c.1582G>A	p.Glu528Lys	p.E528K	ENST00000396946	NM_032415.4	528	Gag/Aag																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508499	106508499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	44	74	0	ENST00000359195.3:c.493G>A	p.Val165Ile	p.V165I	ENST00000359195	NM_002649.2	165	Gtc/Atc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108155142	108155142	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	173	310	0	ENST00000278616.4:c.3935G>T	p.Arg1312Ile	p.R1312I	ENST00000278616	NM_000051.3	1312	aGa/aTa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32950861	32950861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	209	315	0	ENST00000380152.3:c.8687G>A	p.Arg2896His	p.R2896H	ENST00000380152		2896	cGt/cAt																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23646627	23646627	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	105	235	0	ENST00000261584.4:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000261584	NM_024675.3	414	Cga/Tga																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37618997	37618997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	23	202	0	ENST00000447079.4:c.673A>G	p.Arg225Gly	p.R225G	ENST00000447079	NM_015083.1	225	Agg/Ggg																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10248621	10248621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	109	261	0	ENST00000340748.4:c.4132C>T	p.Arg1378Trp	p.R1378W	ENST00000340748		1378	Cgg/Tgg																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57485868	57485868	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	132	229	0	ENST00000371085.3:c.1169A>G	p.Gln390Arg	p.Q390R	ENST00000371085	NM_000516.4	390	cAg/cGg																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			137	272	230	0	ENST00000374690.3:c.2226G>T	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgT																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	297	188	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65339129	65339129	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	153	271	0	ENST00000342505.4:c.407del	p.Asn136MetfsTer32	p.N136Mfs*32	ENST00000342505	NM_002227.2	136	aAt/at																																												NEWRECORD																																		
MLH1	4292	MSKCC	GRCh37	3	37070349	37070349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1220422495		P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	181	319	0	ENST00000231790.2:c.1489del	p.Arg497GlyfsTer11	p.R497Gfs*11	ENST00000231790	NM_000249.3	495	aCc/ac																																												NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	235	421	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	37020768	37020769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	160	315	0	ENST00000358127.4:c.76dupG	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gtt/gGtt																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110250508	110250508	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	71	131	0	ENST00000374672.4:c.167del	p.Pro56GlnfsTer58	p.P56Qfs*58	ENST00000374672	NM_004235.4	56	cCa/ca																																												NEWRECORD																																		
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0000755-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	142	299	0	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	16	74	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	47	264	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105604	27105604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	142	493	0	ENST00000324856.7:c.5215C>T	p.Pro1739Ser	p.P1739S	ENST00000324856	NM_006015.4	1739	Cca/Tca																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49436054	49436054	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	46	203	0	ENST00000301067.7:c.5927C>G	p.Ser1976Ter	p.S1976*	ENST00000301067	NM_003482.3	1976	tCa/tGa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44938412	44938412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			26	270	339	0	ENST00000377967.4:c.2960A>G	p.Lys987Arg	p.K987R	ENST00000377967	NM_021140.2	987	aAa/aGa																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36651893	36651894	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	119	423	0	ENST00000244741.5:c.19dup	p.Asp7GlyfsTer29	p.D7Gfs*29	ENST00000244741	NM_000389.4	5	-/G																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	123	236	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
HRAS	0	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	744	411	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15354179	15354179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	135	228	0	ENST00000263377.2:c.2701C>T	p.Pro901Ser	p.P901S	ENST00000263377	NM_058243.2	901	Cca/Tca																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93982036	93982036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	277	432	1	ENST00000369303.4:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000369303	NM_004440.3	477	Gaa/Aaa																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9561396	9561396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	310	427	1	ENST00000353224.5:c.386C>T	p.Ser129Phe	p.S129F	ENST00000353224	NM_177990.2	129	tCc/tTc																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193094261	193094261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	245	362	0	ENST00000367435.3:c.151C>T	p.Pro51Ser	p.P51S	ENST00000367435	NM_024529.4	51	Ccc/Tcc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41306568	41306568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	234	375	1	ENST00000373198.4:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000373198	NM_133170.3	364	cGa/cAa																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57861246	57861246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	386	573	0	ENST00000228682.2:c.1043G>A	p.Arg348Gln	p.R348Q	ENST00000228682	NM_005269.2	348	cGa/cAa																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259244	89259244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	232	319	0	ENST00000336596.2:c.388G>A	p.Asp130Asn	p.D130N	ENST00000336596	NM_005233.5	130	Gat/Aat																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140494160	140494160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	323	439	0	ENST00000288602.6:c.1088C>T	p.Ser363Phe	p.S363F	ENST00000288602	NM_004333.4	363	tCc/tTc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29416221	29416221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	293	477	0	ENST00000389048.3:c.4732C>T	p.Pro1578Ser	p.P1578S	ENST00000389048	NM_004304.4	1578	Cct/Tct																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29436901	29436901	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200110351		P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	281	462	0	ENST00000389048.3:c.3692G>A	p.Arg1231Gln	p.R1231Q	ENST00000389048	NM_004304.4	1231	cGg/cAg																																												NEWRECORD																																		
CXCR4	0	MSKCC	GRCh37	2	136872864	136872864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	436	694	0	ENST00000241393.3:c.634G>A	p.Gly212Ser	p.G212S	ENST00000241393	NM_003467.2	212	Ggt/Agt																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47163893	47163893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	305	405	0	ENST00000409792.3:c.2233C>T	p.Pro745Ser	p.P745S	ENST00000409792	NM_014159.6	745	Cca/Tca																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589306	67589306	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	162	245	0	ENST00000274335.5:c.1294C>T	p.Gln432Ter	p.Q432*	ENST00000274335		432	Caa/Taa																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20481633	20481633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	251	352	0	ENST00000346618.3:c.702G>T	p.Lys234Asn	p.K234N	ENST00000346618	NM_001949.4	234	aaG/aaT																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117709098	117709098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	265	466	1	ENST00000368508.3:c.1859C>T	p.Pro620Leu	p.P620L	ENST00000368508	NM_002944.2	620	cCt/cTt																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38282101	38282101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	197	467	1	ENST00000425967.3:c.955C>A	p.Gln319Lys	p.Q319K	ENST00000425967	NM_001174067.1	319	Cag/Aag																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98220507	98220507	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	266	368	0	ENST00000331920.6:c.2956G>A	p.Asp986Asn	p.D986N	ENST00000331920	NM_000264.3	986	Gac/Aac																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139417574	139417574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	324	453	1	ENST00000277541.6:c.470C>T	p.Pro157Leu	p.P157L	ENST00000277541	NM_017617.3	157	cCc/cTc																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123324982	123324982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	294	480	0	ENST00000358487.5:c.346G>A	p.Glu116Lys	p.E116K	ENST00000358487	NM_000141.4	116	Gaa/Aaa																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64573716	64573716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	225	383	0	ENST00000337652.1:c.1052C>T	p.Thr351Ile	p.T351I	ENST00000337652	NM_130803.2	351	aCt/aTt																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18443881	18443881	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	195	342	0	ENST00000266497.5:c.854A>C	p.Lys285Thr	p.K285T	ENST00000266497		285	aAg/aCg																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18534798	18534798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	214	369	0	ENST00000266497.5:c.1856C>T	p.Ser619Phe	p.S619F	ENST00000266497		619	tCc/tTc																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121431395	121431395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	199	388	0	ENST00000257555.6:c.599G>A	p.Arg200Gln	p.R200Q	ENST00000257555		200	cGg/cAg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133241044	133241044	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200283666		P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	199	328	0	ENST00000320574.5:c.2473C>T	p.Arg825Cys	p.R825C	ENST00000320574	NM_006231.2	825	Cgc/Tgc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28895604	28895604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	239	405	0	ENST00000282397.4:c.3170G>A	p.Gly1057Glu	p.G1057E	ENST00000282397	NM_002019.4	1057	gGa/gAa																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81934354	81934354	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	345	481	0	ENST00000359376.3:c.1331C>G	p.Pro444Arg	p.P444R	ENST00000359376	NM_002661.3	444	cCc/cGc																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59853769	59853769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	261	416	0	ENST00000259008.2:c.2090C>T	p.Ser697Phe	p.S697F	ENST00000259008	NM_032043.2	697	tCt/tTt																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42797979	42797979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	329	553	1	ENST00000575354.2:c.4031C>T	p.Ser1344Phe	p.S1344F	ENST00000575354	NM_015125.3	1344	tCt/tTt																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31024339	31024339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	825	386	0	ENST00000375687.4:c.3824C>T	p.Ser1275Leu	p.S1275L	ENST00000375687	NM_015338.5	1275	tCa/tTa																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54945354	54945354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	410	271	0	ENST00000312783.6:c.1072G>A	p.Asp358Asn	p.D358N	ENST00000312783	NM_198436.1	358	Gac/Aac																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39755506	39755506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	255	459	0	ENST00000288319.7:c.1259C>T	p.Ser420Phe	p.S420F	ENST00000288319	NM_182918.3	420	tCc/tTc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47044847	47044847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	200	167	0	ENST00000329236.7:c.1939C>T	p.Pro647Ser	p.P647S	ENST00000329236	NM_001204466.1	647	Ccg/Tcg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53223568	53223568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	130	121	1	ENST00000375401.3:c.3791C>T	p.Ala1264Val	p.A1264V	ENST00000375401	NM_004187.3	1264	gCc/gTc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527499	157527519	+	inframe_deletion	In_Frame_Del	DEL	GAGGAAGACGAGGAGGATGAG	GAGGAAGACGAGGAGGATGAG	-			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	170	385	0	ENST00000346085.5:c.5233_5253del	p.Glu1745_Asp1751del	p.E1745_D1751del	ENST00000346085	NM_020732.3	1742	GAGGAAGACGAGGAGGATGAG/-																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711896	89711897	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	244	296	1	ENST00000371953.3:c.516dup	p.Arg173AlafsTer7	p.R173Afs*7	ENST00000371953	NM_000314.4	172	agg/aGgg																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21620142	21620143	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	188	280	2	ENST00000382592.4:c.23_24delinsTT	p.Ala8Val	p.A8V	ENST00000382592	NM_014572.2	8	gCC/gTT																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0014465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	341	434	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	260	735	0	ENST00000269305.4:c.658T>G	p.Tyr220Asp	p.Y220D	ENST00000269305	NM_001126112.2	220	Tat/Gat																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27092739	27092740	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	218	479	0	ENST00000324856.7:c.2765dup	p.Met923HisfsTer13	p.M923Hfs*13	ENST00000324856	NM_006015.4	920	-/G																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69233163	69233163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	162	379	0	ENST00000462284.1:c.1028A>G	p.Asp343Gly	p.D343G	ENST00000462284	NM_002392.5	343	gAt/gGt																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134670374	134670375	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0014465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	37	403	0	ENST00000398015.3:c.285_286delinsAA	p.Asp95_Cys96delinsGluSer	p.D95_C96delinsES	ENST00000398015	NM_004441.4	95	gaCTgc/gaAAgc																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86685212	86685222	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGTACCTGAAC	TGTACCTGAAC	-			P-0014465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			229	171	217	0	ENST00000274376.6:c.2929_2939del	p.Val977SerfsTer8	p.V977Sfs*8	ENST00000274376	NM_002890.2	976	aaTGTACCTGAACtt/aatt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151877996	151877996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	178	276	0	ENST00000262189.6:c.6949C>G	p.Gln2317Glu	p.Q2317E	ENST00000262189	NM_170606.2	2317	Caa/Gaa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139399960	139399960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	260	678	1	ENST00000277541.6:c.4388G>T	p.Cys1463Phe	p.C1463F	ENST00000277541	NM_017617.3	1463	tGc/tTc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70349946	70349946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	267	371	0	ENST00000374080.3:c.3929C>T	p.Pro1310Leu	p.P1310L	ENST00000374080		1310	cCa/cTa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938434	76938434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014465-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	33	234	0	ENST00000373344.5:c.2314G>A	p.Gly772Arg	p.G772R	ENST00000373344	NM_000489.3	772	Ggg/Agg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	49	249	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	133	354	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1764	164	928	1	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	167	691	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420788	49420788	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	106	486	0	ENST00000301067.7:c.14961G>A	p.Trp4987Ter	p.W4987*	ENST00000301067	NM_003482.3	4987	tgG/tgA																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30686252	30686252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	100	429	0	ENST00000359013.4:c.183G>C	p.Met61Ile	p.M61I	ENST00000359013	NM_001024847.2	61	atG/atC																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8518010	8518010	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	172	739	0	ENST00000356435.5:c.1381C>T	p.Gln461Ter	p.Q461*	ENST00000356435		461	Caa/Taa																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65313213	65313213	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	116	695	2	ENST00000342505.4:c.1899+2C>T		p.X633_splice	ENST00000342505	NM_002227.2	633																																													NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65335148	65335148	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	76	486	0	ENST00000342505.4:c.493G>C	p.Asp165His	p.D165H	ENST00000342505	NM_002227.2	165	Gat/Cat																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	176050364	176050364	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	53	597	0	ENST00000367669.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000367669	NM_022457.5	401	Cga/Tga																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133238201	133238201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	101	740	0	ENST00000320574.5:c.2776G>A	p.Glu926Lys	p.E926K	ENST00000320574	NM_006231.2	926	Gag/Aag																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28644711	28644711	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	97	462	0	ENST00000241453.7:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000241453	NM_004119.2	28	Caa/Taa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28913406	28913406	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	118	540	0	ENST00000282397.4:c.2387C>G	p.Ser796Ter	p.S796*	ENST00000282397	NM_002019.4	796	tCa/tGa																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88726689	88726689	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	95	552	0	ENST00000360948.2:c.355C>T	p.Gln119Ter	p.Q119*	ENST00000360948	NM_001012338.2	119	Cag/Tag																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38508218	38508218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	151	692	0	ENST00000254066.5:c.526G>A	p.Glu176Lys	p.E176K	ENST00000254066	NM_000964.3	176	Gag/Aag																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740432	58740432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	189	818	0	ENST00000305921.3:c.1337C>T	p.Ser446Leu	p.S446L	ENST00000305921	NM_003620.3	446	tCa/tTa																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	756598	756598	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	66	635	0	ENST00000314574.4:c.230C>G	p.Ser77Ter	p.S77*	ENST00000314574	NM_005433.3	77	tCa/tGa																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15350573	15350573	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	42	457	0	ENST00000263377.2:c.3342G>C	p.Lys1114Asn	p.K1114N	ENST00000263377	NM_058243.2	1114	aaG/aaC																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26022340	26022340	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	142	630	0	ENST00000435504.4:c.317C>G	p.Ser106Ter	p.S106*	ENST00000435504		106	tCa/tGa																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30054221	30054221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	246	668	0	ENST00000338641.4:c.643G>C	p.Glu215Gln	p.E215Q	ENST00000338641	NM_000268.3	215	Gag/Cag																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49928919	49928919	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	93	834	0	ENST00000296474.3:c.3447C>G	p.Ile1149Met	p.I1149M	ENST00000296474	NM_002447.2	1149	atC/atG																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138375052	138375052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	61	534	0	ENST00000289153.2:c.3007C>G	p.Leu1003Val	p.L1003V	ENST00000289153	NM_006219.2	1003	Ctc/Gtc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189586422	189586422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	63	352	0	ENST00000264731.3:c.1046G>A	p.Gly349Glu	p.G349E	ENST00000264731	NM_003722.4	349	gGa/gAa																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467746	66467746	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	107	593	0	ENST00000273854.3:c.523G>C	p.Asp175His	p.D175H	ENST00000273854	NM_004439.5	175	Gat/Cat																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176562906	176562906	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	245	513	0	ENST00000439151.2:c.802G>C	p.Glu268Gln	p.E268Q	ENST00000439151	NM_022455.4	268	Gaa/Caa																																												NEWRECORD																																		
HIST1H3E	0	MSKCC	GRCh37	6	26225622	26225622	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1451	431	1282	0	ENST00000360408.1:c.240G>C	p.Lys80Asn	p.K80N	ENST00000360408	NM_003532.2	80	aaG/aaC																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137519721	137519721	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	50	404	0	ENST00000367739.4:c.917C>G	p.Ser306Ter	p.S306*	ENST00000367739	NM_000416.2	306	tCa/tGa																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150005546	150005546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	87	599	0	ENST00000253339.5:c.679C>T	p.His227Tyr	p.H227Y	ENST00000253339		227	Cac/Tac																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157528033	157528033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	59	299	1	ENST00000346085.5:c.5758G>A	p.Glu1920Lys	p.E1920K	ENST00000346085	NM_020732.3	1920	Gag/Aag																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145742144	145742144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	88	219	0	ENST00000428558.2:c.359G>A	p.Gly120Glu	p.G120E	ENST00000428558	NM_004260.3	120	gGa/gAa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8504293	8504293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	119	586	0	ENST00000356435.5:c.1790C>T	p.Thr597Ile	p.T597I	ENST00000356435		597	aCt/aTt																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97864041	97864041	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	118	634	0	ENST00000289081.3:c.1625G>C	p.Arg542Thr	p.R542T	ENST00000289081	NM_000136.2	542	aGa/aCa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139417503	139417503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	119	632	1	ENST00000277541.6:c.541G>A	p.Glu181Lys	p.E181K	ENST00000277541	NM_017617.3	181	Gag/Aag																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76972667	76972667	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	189	744	0	ENST00000373344.5:c.74C>G	p.Ser25Ter	p.S25*	ENST00000373344	NM_000489.3	25	tCa/tGa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123191741	123191741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	123	759	1	ENST00000218089.9:c.1330G>A	p.Glu444Lys	p.E444K	ENST00000218089	NM_001042749.1	444	Gag/Aag																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123191748	123191748	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	124	781	0	ENST00000218089.9:c.1337G>C	p.Gly446Ala	p.G446A	ENST00000218089	NM_001042749.1	446	gGa/gCa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	57	370	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0012090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	80	502	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579373	7579373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	48	454	0	ENST00000269305.4:c.314del	p.Gly105AlafsTer18	p.G105Afs*18	ENST00000269305	NM_001126112.2	105	gGc/gc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56448328	56448328	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199909371		P-0012090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	56	405	0	ENST00000407977.2:c.319G>A	p.Val107Ile	p.V107I	ENST00000407977		107	Gtc/Atc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2223461	2223461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	30	321	0	ENST00000398665.3:c.3572C>T	p.Ser1191Phe	p.S1191F	ENST00000398665	NM_032482.2	1191	tCt/tTt																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29121292	29121292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1487	105	613	0	ENST00000328354.6:c.383C>T	p.Pro128Leu	p.P128L	ENST00000328354	NM_007194.3	128	cCa/cTa																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0004040-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			557	261	587	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004040-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			524	316	624	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0004040-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			369	216	380	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831603	72831604	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCACTCACA			P-0004040-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			607	280	676	0	ENST00000268489.5:c.4977_4978insTGTGAGTGGC	p.Ser1660CysfsTer5	p.S1660Cfs*5	ENST00000268489	NM_006885.3	1659	-/TGTGAGTGGC																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591115	67591116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004040-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			395	394	412	0	ENST00000274335.5:c.1710dupT	p.Ile571TyrfsTer31	p.I571Yfs*31	ENST00000274335		570	ctt/cTtt																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65330610	65330611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004040-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			183	242	468	0	ENST00000342505.4:c.1035dupA	p.Leu346ThrfsTer4	p.L346Tfs*4	ENST00000342505	NM_002227.2	345	-/A																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	475	616	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	132	355	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	192	373	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	188	319	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																												NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	248	424	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10248552	10248552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	387	528	0	ENST00000340748.4:c.4201C>T	p.Arg1401Trp	p.R1401W	ENST00000340748		1401	Cgg/Tgg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15281257	15281257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	351	418	0	ENST00000263388.2:c.4999C>T	p.Arg1667Cys	p.R1667C	ENST00000263388	NM_000435.2	1667	Cgc/Tgc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175969	112175970	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	163	310	0	ENST00000257430.4:c.4682dupA	p.Asp1562GlyfsTer5	p.D1562Gfs*5	ENST00000257430	NM_000038.5	1560	gaa/gAaa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	66	228	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117745	70117746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	41	377	0	ENST00000245479.2:c.214dup	p.Cys72LeufsTer180	p.C72Lfs*180	ENST00000245479	NM_000346.3	71	-/T																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52712514	52712514	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0005893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	157	513	0	ENST00000394830.3:c.236+2T>C		p.X79_splice	ENST00000394830	NM_018313.4	79																																													NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164067	47164067	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	73	408	0	ENST00000409792.3:c.2059del	p.Cys687AlafsTer9	p.C687Afs*9	ENST00000409792	NM_014159.6	687	Tgc/gc																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53253991	53253992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	193	480	0	ENST00000375401.3:c.80dup	p.Leu28SerfsTer47	p.L28Sfs*47	ENST00000375401	NM_004187.3	27	cct/ccCt																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188217	10188217	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	146	558	0	ENST00000256474.2:c.360del	p.Asp121MetfsTer38	p.D121Mfs*38	ENST00000256474	NM_000551.3	120	agA/ag																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78429345	78429345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	191	755	0	ENST00000370768.2:c.1097G>A	p.Gly366Asp	p.G366D	ENST00000370768	NM_003902.3	366	gGc/gAc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808555	1808555	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	96	736	0	ENST00000260795.2:c.2169-1G>A		p.X723_splice	ENST00000260795		723																																													NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874907	151874907	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	153	583	0	ENST00000262189.6:c.7631A>G	p.Gln2544Arg	p.Q2544R	ENST00000262189	NM_170606.2	2544	cAg/cGg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52705248	52705248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	180	859	0	ENST00000322088.6:c.130G>A	p.Val44Ile	p.V44I	ENST00000322088	NM_014225.5	44	Gtt/Att																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508023	106508025	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	ATA	ATA	-			P-0013089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	60	272	0	ENST00000359195.3:c.18_20del	p.Tyr6_Lys7delinsTer	p.Y6_K7delins*	ENST00000359195	NM_002649.2	6	tATAaa/taa																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188296	10188297	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	182	863	2	ENST00000256474.2:c.444dup	p.Ala149CysfsTer25	p.A149Cfs*25	ENST00000256474	NM_000551.3	147	att/aTtt																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643923	52643924	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	92	380	0	ENST00000394830.3:c.1972dup	p.Met658AsnfsTer7	p.M658Nfs*7	ENST00000394830	NM_018313.4	658	atg/aAtg																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10191570	10191570	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	445	503	0	ENST00000256474.2:c.563T>A	p.Leu188Gln	p.L188Q	ENST00000256474	NM_000551.3	188	cTg/cAg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47144904	47144904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	71	352	0	ENST00000409792.3:c.4849G>C	p.Ala1617Pro	p.A1617P	ENST00000409792	NM_014159.6	1617	Gcc/Ccc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52442503	52442503	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	146	394	0	ENST00000460680.1:c.242T>G	p.Phe81Cys	p.F81C	ENST00000460680	NM_004656.3	81	tTc/tGc																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149459719	149459719	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1331	266	601	0	ENST00000286301.3:c.488C>G	p.Thr163Ser	p.T163S	ENST00000286301	NM_005211.3	163	aCc/aGc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115928	8115929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	44	138	0	ENST00000346208.3:c.1275dupA	p.Ser426IlefsTer81	p.S426Ifs*81	ENST00000346208		425	cca/ccAa																																												NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			395	126	318	1	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			459	136	425	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			686	143	448	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913559	32913559	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs80359481		P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			785	282	817	1	ENST00000380152.3:c.5073del	p.Lys1691AsnfsTer15	p.K1691Nfs*15	ENST00000380152		1689	gcA/gc																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			370	259	283	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			183	201	352	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			577	157	394	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88649922	88649922	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			388	99	334	1	ENST00000372037.3:c.176del	p.Leu59Ter	p.L59*	ENST00000372037	NM_004329.2	57	ccT/cc																																												NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			755	245	479	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																												NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			719	244	474	3	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	324	647	9	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533939	63533940	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			371	98	249	0	ENST00000307078.5:c.1214_1215delAG	p.Glu405GlyfsTer56	p.E405Gfs*56	ENST00000307078	NM_004655.3	405	gAG/g																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226589917	226589917	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			520	149	277	0	ENST00000366794.5:c.284C>T	p.Thr95Ile	p.T95I	ENST00000366794	NM_001618.3	95	aCa/aTa																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	69928424	69928424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			713	221	405	0	ENST00000352241.4:c.244G>A	p.Ala82Thr	p.A82T	ENST00000352241	NM_198159.2	82	Gcg/Acg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187518911	187518911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			615	245	565	0	ENST00000441802.2:c.12293G>T	p.Cys4098Phe	p.C4098F	ENST00000441802	NM_005245.3	4098	tGt/tTt																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26032090	26032090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1377	452	1012	2	ENST00000244661.2:c.199C>T	p.Pro67Ser	p.P67S	ENST00000244661	NM_003537.3	67	Ccg/Tcg																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94203770	94203770	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			356	115	391	0	ENST00000323929.3:c.884A>G	p.Asn295Ser	p.N295S	ENST00000323929	NM_005591.3	295	aAt/aGt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118359330	118359330	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			410	143	297	2	ENST00000534358.1:c.4334T>C	p.Phe1445Ser	p.F1445S	ENST00000534358	NM_005933.3	1445	tTt/tCt																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56495415	56495415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			913	300	652	0	ENST00000267101.3:c.3605G>A	p.Arg1202Gln	p.R1202Q	ENST00000267101	NM_001982.3	1202	cGg/cAg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42052624	42052624	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	454	831	0	ENST00000219905.7:c.7295A>C	p.Glu2432Ala	p.E2432A	ENST00000219905	NM_001164273.1	2432	gAg/gCg																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91354482	91354482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			641	222	459	1	ENST00000355112.3:c.3922G>A	p.Gly1308Arg	p.G1308R	ENST00000355112	NM_000057.2	1308	Gga/Aga																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3781302	3781302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	353	589	0	ENST00000262367.5:c.5063C>T	p.Thr1688Met	p.T1688M	ENST00000262367	NM_004380.2	1688	aCg/aTg																																												NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8108611	8108611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			871	277	483	1	ENST00000585124.1:c.784C>T	p.Leu262Phe	p.L262F	ENST00000585124	NM_004217.3	262	Ctt/Ttt																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56492937	56492937	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			149	57	113	0	ENST00000407977.2:c.2T>C	p.Met1?	p.M1?	ENST00000407977		1	aTg/aCg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11102000	11102000	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			530	192	348	1	ENST00000344626.4:c.1419+1G>A		p.X473_splice	ENST00000344626	NM_003072.3	473																																													NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11145645	11145645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			766	282	480	0	ENST00000344626.4:c.4007G>A	p.Arg1336His	p.R1336H	ENST00000344626	NM_003072.3	1336	cGc/cAc																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42866321	42866321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			539	171	335	0	ENST00000398585.3:c.311C>T	p.Thr104Met	p.T104M	ENST00000398585	NM_001135099.1	104	aCg/aTg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41513598	41513598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			904	352	567	1	ENST00000263253.7:c.502G>T	p.Gly168Trp	p.G168W	ENST00000263253	NM_001429.3	168	Ggg/Tgg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29041044	29041047	+	frameshift_variant	Frame_Shift_Del	DEL	AATA	AATA	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			322	106	313	0	ENST00000282397.4:c.381_384del	p.Phe127LeufsTer9	p.F127Lfs*9	ENST00000282397	NM_002019.4	127	ttTATT/tt																																												NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134851848	134851848	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			706	191	477	0	ENST00000398015.3:c.1259del	p.Pro420HisfsTer28	p.P420Hfs*28	ENST00000398015	NM_004441.4	418	ttC/tt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11259454	11259454	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			649	186	433	0	ENST00000361445.4:c.4114del	p.Leu1372CysfsTer3	p.L1372Cfs*3	ENST00000361445	NM_004958.3	1372	Ctg/tg																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			896	315	529	1	ENST00000331920.6:c.290delA	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157100405	157100406	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGT			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			184	44	101	0	ENST00000346085.5:c.1344_1345insTCG	p.Pro448_Pro449insSer	p.P448_P449insS	ENST00000346085	NM_020732.3	448	ccg/cCGTcg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831391	72831392	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			838	173	557	0	ENST00000268489.5:c.5187_5189dup	p.Gln1741dup	p.Q1741dup	ENST00000268489	NM_006885.3	1741	caa/caGCAa																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11132494	11132494	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			883	245	500	0	ENST00000344626.4:c.2713del	p.Arg905AlafsTer5	p.R905Afs*5	ENST00000344626	NM_003072.3	904	Ccc/cc																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64132896	64132896	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			997	325	621	3	ENST00000334205.4:c.1034del	p.Pro345LeufsTer30	p.P345Lfs*30	ENST00000334205	NM_003942.2	344	Ccc/cc																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32456497	32456497	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			132	24	54	0	ENST00000332351.3:c.395del	p.Pro132ArgfsTer26	p.P132Rfs*26	ENST00000332351	NM_024426.4	132	cCg/cg																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30671478	30671478	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			877	317	552	0	ENST00000376406.3:c.5482del	p.Gln1828LysfsTer10	p.Q1828Kfs*10	ENST00000376406	NM_014641.2	1828	Caa/aa																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			521	526	509	0	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38953630	38953630	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			315	59	266	0	ENST00000357387.3:c.2723A>G	p.Asn908Ser	p.N908S	ENST00000357387	NM_152756.3	908	aAt/aGt																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41730095	41730095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1353	300	850	0	ENST00000242208.4:c.434G>A	p.Ser145Asn	p.S145N	ENST00000242208	NM_002192.2	145	aGt/aAt																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50467765	50467765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			692	127	444	0	ENST00000331340.3:c.1000C>T	p.Pro334Ser	p.P334S	ENST00000331340	NM_006060.4	334	Ccc/Tcc																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32456645	32456645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			180	66	127	0	ENST00000332351.3:c.247G>A	p.Val83Ile	p.V83I	ENST00000332351	NM_024426.4	83	Gtc/Atc																																												NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			537	179	509	9	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117714409	117714409	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			569	129	480	1	ENST00000368508.3:c.1240del	p.Ile414LeufsTer14	p.I414Lfs*14	ENST00000368508	NM_002944.2	414	Att/tt																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227660808	227660810	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			408	254	342	9	ENST00000305123.5:c.2645_2647delAGC	p.Gln882del	p.Q882del	ENST00000305123	NM_005544.2	882	cAGCcc/ccc																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45396914	45396915	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004954-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			381	95	310	0	ENST00000262160.6:c.257dup	p.Leu87ThrfsTer20	p.L87Tfs*20	ENST00000262160	NM_005901.5	86	gga/ggGa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	73	410	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	41	310	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	31	264	1	ENST00000342988.3:c.692dup	p.Ser232GlnfsTer3	p.S232Qfs*3	ENST00000342988	NM_005359.5	229	ctg/ctGg																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	25	231	1	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	60	414	7	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																												NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	169	705	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																												NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	85	549	2	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	145	682	2	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	64	466	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	179	827	1	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	33	454	2	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	31	363	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164711	47164711	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201984344		P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	54	439	0	ENST00000409792.3:c.1415G>A	p.Arg472His	p.R472H	ENST00000409792	NM_014159.6	472	cGt/cAt																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	71	314	2	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	129	600	1	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa																																												NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	61	776	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																												NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	49	477	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	89	482	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5220116	5220116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	67	381	0	ENST00000357368.4:c.3599G>A	p.Arg1200His	p.R1200H	ENST00000357368	NM_002850.3	1200	cGt/cAt																																												NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	41	583	6	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																													NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	164	866	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	298	831	11	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	127	525	1	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138375075	138375075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	75	441	0	ENST00000289153.2:c.2984G>A	p.Arg995Gln	p.R995Q	ENST00000289153	NM_006219.2	995	cGg/cAg																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39609314	39609314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	102	488	0	ENST00000262039.4:c.1616G>A	p.Arg539His	p.R539H	ENST00000262039	NM_002647.2	539	cGt/cAt																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40743859	40743859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	90	575	0	ENST00000373198.4:c.3136C>T	p.Arg1046Cys	p.R1046C	ENST00000373198	NM_133170.3	1046	Cgc/Tgc																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155870205	155870205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	64	790	3	ENST00000368323.3:c.634C>T	p.Arg212Trp	p.R212W	ENST00000368323	NM_006912.5	212	Cgg/Tgg																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106193892	106193892	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	56	496	0	ENST00000380013.4:c.4354C>T	p.Arg1452Ter	p.R1452*	ENST00000380013	NM_001127208.2	1452	Cga/Tga																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41569733	41569733	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs144547088		P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	148	592	0	ENST00000263253.7:c.4724A>G	p.Asn1575Ser	p.N1575S	ENST00000263253	NM_001429.3	1575	aAt/aGt																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	150	718	0	ENST00000344626.4:c.810delC	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45375016	45375016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	71	329	0	ENST00000262160.6:c.827C>T	p.Ser276Leu	p.S276L	ENST00000262160	NM_005901.5	276	tCg/tTg																																												NEWRECORD																																		
RYBP	0	MSKCC	GRCh37	3	72427568	72427568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	93	345	0	ENST00000477973.2:c.920G>A	p.Asp308Asn	p.D308N	ENST00000477973	NM_012234.5	308	Gac/Aac																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10265302	10265302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	115	501	0	ENST00000340748.4:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000340748		582	Cgg/Tgg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991757	72991758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	25	371	0	ENST00000268489.5:c.2287dupG	p.Glu763GlyfsTer26	p.E763Gfs*26	ENST00000268489	NM_006885.3	763	gag/gGag																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50484085	50484085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	126	531	0	ENST00000394963.4:c.935G>A	p.Arg312His	p.R312H	ENST00000394963	NM_003076.4	312	cGt/cAt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11199365	11199365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	85	509	1	ENST00000361445.4:c.5126G>A	p.Arg1709His	p.R1709H	ENST00000361445	NM_004958.3	1709	cGc/cAc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16256832	16256832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	92	400	0	ENST00000375759.3:c.4097G>A	p.Arg1366Gln	p.R1366Q	ENST00000375759	NM_015001.2	1366	cGa/cAa																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156846354	156846354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	115	554	1	ENST00000524377.1:c.1795C>T	p.Arg599Cys	p.R599C	ENST00000524377	NM_002529.3	599	Cgc/Tgc																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25469633	25469633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	67	445	2	ENST00000264709.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264709	NM_175629.2	379	Cgc/Tgc																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61719743	61719743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	70	662	0	ENST00000401558.2:c.1525C>T	p.His509Tyr	p.H509Y	ENST00000401558	NM_003400.3	509	Cat/Tat																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99182505	99182505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	110	502	0	ENST00000074304.5:c.2308G>A	p.Val770Met	p.V770M	ENST00000074304	NM_001134224.1	770	Gtg/Atg																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149752	202149752	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	86	593	0	ENST00000358485.4:c.1193A>G	p.Gln398Arg	p.Q398R	ENST00000358485	NM_001080125.1	398	cAg/cGg																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225378306	225378306	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	58	535	0	ENST00000264414.4:c.589G>T	p.Gly197Ter	p.G197*	ENST00000264414	NM_003590.4	197	Gga/Tga																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225379486	225379486	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	68	367	1	ENST00000264414.4:c.382C>T	p.Arg128Cys	p.R128C	ENST00000264414	NM_003590.4	128	Cgt/Tgt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	48	230	0	ENST00000263967.3:c.1625A>T	p.Glu542Val	p.E542V	ENST00000263967	NM_006218.2	542	gAa/gTa																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185146653	185146653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	100	315	1	ENST00000265026.3:c.284C>T	p.Thr95Met	p.T95M	ENST00000265026	NM_004721.4	95	aCg/aTg																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55946269	55946269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	136	431	0	ENST00000263923.4:c.3910G>A	p.Gly1304Ser	p.G1304S	ENST00000263923	NM_002253.2	1304	Ggc/Agc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187629616	187629616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	140	507	0	ENST00000441802.2:c.1366G>A	p.Ala456Thr	p.A456T	ENST00000441802	NM_005245.3	456	Gca/Aca																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30681587	30681587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	82	626	0	ENST00000376406.3:c.510G>T	p.Glu170Asp	p.E170D	ENST00000376406	NM_014641.2	170	gaG/gaT																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93974378	93974378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	96	693	2	ENST00000369303.4:c.1676C>T	p.Ala559Val	p.A559V	ENST00000369303	NM_004440.3	559	gCt/gTt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157528252	157528252	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	41	462	1	ENST00000346085.5:c.5977C>T	p.Gln1993Ter	p.Q1993*	ENST00000346085	NM_020732.3	1993	Cag/Tag																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116395454	116395454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	66	558	0	ENST00000397752.3:c.1747A>C	p.Ile583Leu	p.I583L	ENST00000397752	NM_000245.2	583	Ata/Cta																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372049	55372049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	29	156	0	ENST00000297316.4:c.739G>A	p.Ala247Thr	p.A247T	ENST00000297316	NM_022454.3	247	Gcg/Acg																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90982701	90982701	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1068	58	618	0	ENST00000265433.3:c.787T>C	p.Phe263Leu	p.F263L	ENST00000265433	NM_002485.4	263	Ttt/Ctt																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145741959	145741959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	89	328	1	ENST00000428558.2:c.544C>T	p.Arg182Trp	p.R182W	ENST00000428558	NM_004260.3	182	Cgg/Tgg																																												NEWRECORD																																		
EGFL7	0	MSKCC	GRCh37	9	139564074	139564074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	132	670	1	ENST00000308874.7:c.214G>A	p.Ala72Thr	p.A72T	ENST00000308874		72	Gcc/Acc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70406565	70406565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	74	669	1	ENST00000373644.4:c.4079G>A	p.Cys1360Tyr	p.C1360Y	ENST00000373644	NM_030625.2	1360	tGt/tAt																																												NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69625386	69625386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	101	561	0	ENST00000334134.2:c.407C>T	p.Thr136Met	p.T136M	ENST00000334134	NM_005247.2	136	aCg/aTg																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77069963	77069963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	170	643	0	ENST00000356341.3:c.577C>T	p.Arg193Cys	p.R193C	ENST00000356341	NM_002576.4	193	Cgc/Tgc																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119170273	119170273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	125	523	0	ENST00000264033.4:c.2503C>T	p.Arg835Trp	p.R835W	ENST00000264033	NM_005188.3	835	Cgg/Tgg																																												NEWRECORD																																		
RAB35	0	MSKCC	GRCh37	12	120536641	120536641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	98	851	2	ENST00000229340.5:c.451G>A	p.Ala151Thr	p.A151T	ENST00000229340	NM_006861.6	151	Gcc/Acc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133238236	133238236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	112	534	0	ENST00000320574.5:c.2741C>T	p.Ala914Val	p.A914V	ENST00000320574	NM_006231.2	914	gCt/gTt																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28623524	28623524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	86	360	2	ENST00000241453.7:c.1033G>A	p.Val345Ile	p.V345I	ENST00000241453	NM_004119.2	345	Gta/Ata																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105239892	105239892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	94	361	0	ENST00000349310.3:c.728G>A	p.Arg243His	p.R243H	ENST00000349310	NM_001014432.1	243	cGt/cAt																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67473704	67473704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	104	548	1	ENST00000327367.4:c.784G>A	p.Asp262Asn	p.D262N	ENST00000327367	NM_005902.3	262	Gac/Aac																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3779038	3779038	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	29	302	0	ENST00000262367.5:c.6010C>T	p.Arg2004Ter	p.R2004*	ENST00000262367	NM_004380.2	2004	Cga/Tga																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830936	72830936	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	268	1001	0	ENST00000268489.5:c.5645T>A	p.Ile1882Asn	p.I1882N	ENST00000268489	NM_006885.3	1882	aTc/aAc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993737	72993737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	153	639	1	ENST00000268489.5:c.308G>A	p.Arg103His	p.R103H	ENST00000268489	NM_006885.3	103	cGc/cAc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1219322	1219322	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	50	471	0	ENST00000326873.7:c.375-1C>T		p.X125_splice	ENST00000326873	NM_000455.4	125																																													NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18280066	18280066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	25	90	0	ENST00000222254.8:c.2149C>T	p.Arg717Cys	p.R717C	ENST00000222254	NM_005027.3	717	Cgc/Tgc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42793441	42793441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	59	375	0	ENST00000575354.2:c.1243C>T	p.Arg415Trp	p.R415W	ENST00000575354	NM_015125.3	415	Cgg/Tgg																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29130448	29130448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	113	502	0	ENST00000328354.6:c.262C>T	p.Pro88Ser	p.P88S	ENST00000328354	NM_007194.3	88	Cct/Tct																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30038260	30038260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	140	559	3	ENST00000338641.4:c.433G>A	p.Ala145Thr	p.A145T	ENST00000338641	NM_000268.3	145	Gcc/Acc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41573224	41573224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	91	460	0	ENST00000263253.7:c.5509C>T	p.Arg1837Trp	p.R1837W	ENST00000263253	NM_001429.3	1837	Cgg/Tgg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70344613	70344613	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	88	430	0	ENST00000374080.3:c.1975-1G>T		p.X659_splice	ENST00000374080		659																																													NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157502210	157502211	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	103	381	0	ENST00000346085.5:c.3249_3250del	p.Gly1084LeufsTer33	p.G1084Lfs*33	ENST00000346085	NM_020732.3	1081	gaAGag/gaag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023831	27023831	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	36	303	0	ENST00000324856.7:c.941del	p.Gly314AlafsTer49	p.G314Afs*49	ENST00000324856	NM_006015.4	313	Ggg/gg																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47637392	47637392	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	135	780	0	ENST00000233146.2:c.526del	p.Cys176ValfsTer38	p.C176Vfs*38	ENST00000233146	NM_000251.2	176	Tgt/gt																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41246532	41246532	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	164	692	3	ENST00000357654.3:c.1016del	p.Lys339ArgfsTer2	p.K339Rfs*2	ENST00000357654	NM_007294.3	339	aAg/ag																																												NEWRECORD																																		
ICOSLG	0	MSKCC	GRCh37	21	45655413	45655413	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	47	453	0	ENST00000407780.3:c.439del	p.His147ThrfsTer15	p.H147Tfs*15	ENST00000407780	NM_001283052.1	147	Cac/ac																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023518	27023519	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	76	647	1	ENST00000324856.7:c.626dup	p.Asn209LysfsTer191	p.N209Kfs*191	ENST00000324856	NM_006015.4	208	-/A																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2126529	2126529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	54	676	0	ENST00000219476.3:c.2784del	p.Glu929ArgfsTer19	p.E929Rfs*19	ENST00000219476	NM_000548.3	927	aCc/ac																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12870961	12870962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	72	410	0	ENST00000228872.4:c.192dup	p.Gln65SerfsTer60	p.Q65Sfs*60	ENST00000228872	NM_004064.3	63	gat/gaTt																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153253835	153253836	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	38	308	0	ENST00000281708.4:c.897dup	p.Asp300ArgfsTer17	p.D300Rfs*17	ENST00000281708	NM_033632.3	299	-/A																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123220560	123220560	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	212	474	0	ENST00000218089.9:c.3222del	p.Lys1074AsnfsTer31	p.K1074Nfs*31	ENST00000218089	NM_001042749.1	1073	Aaa/aa																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	111983042	111983042	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1181	122	931	6	ENST00000368678.4:c.1505del	p.Lys502ArgfsTer53	p.K502Rfs*53	ENST00000368678		502	aAg/ag																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5077503	5077503	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	23	248	0	ENST00000381652.3:c.1919del	p.Lys640ArgfsTer6	p.K640Rfs*6	ENST00000381652	NM_004972.3	639	Aaa/aa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434026	49434027	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	71	367	0	ENST00000301067.7:c.7525_7526dup	p.Val2510ArgfsTer34	p.V2510Rfs*34	ENST00000301067	NM_003482.3	2509	aag/aaAAg																																												NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44923045	44923048	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0010803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	112	245	0	ENST00000377967.4:c.1909_1912del	p.Ser637ThrfsTer53	p.S637Tfs*53	ENST00000377967	NM_021140.2	636	CTATct/ct																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0009822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	321	653	2	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	253	686	0	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31375079	31375079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	92	532	0	ENST00000328111.2:c.476C>T	p.Pro159Leu	p.P159L	ENST00000328111	NM_006892.3	159	cCg/cTg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68857393	68857394	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0009822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	228	472	0	ENST00000261769.5:c.2029_2030dupCA	p.Gln677HisfsTer3	p.Q677Hfs*3	ENST00000261769	NM_004360.3	676	-/CA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0007095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	419	461	2	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																													NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	98	341	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41743930	41743930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141302305		P-0007095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1256	330	550	2	ENST00000301178.4:c.865G>A	p.Val289Met	p.V289M	ENST00000301178	NM_021913.4	289	Gtg/Atg																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86665719	86665719	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0007095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	53	275	0	ENST00000274376.6:c.1698+2T>G		p.X566_splice	ENST00000274376	NM_002890.2	566																																													NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97912257	97912257	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	623	503	0	ENST00000289081.3:c.634C>T	p.Gln212Ter	p.Q212*	ENST00000289081	NM_000136.2	212	Cag/Tag																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70405953	70405953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	345	505	0	ENST00000373644.4:c.3467G>C	p.Arg1156Thr	p.R1156T	ENST00000373644	NM_030625.2	1156	aGa/aCa																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593477	48593477	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	266	409	1	ENST00000342988.3:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000342988	NM_005359.5	410	Cag/Tag																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17937626	17937626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	54	550	0	ENST00000458235.1:c.3301G>A	p.Gly1101Arg	p.G1101R	ENST00000458235	NM_000215.3	1101	Gga/Aga																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30032758	30032758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	127	427	0	ENST00000338641.4:c.133G>A	p.Asp45Asn	p.D45N	ENST00000338641	NM_000268.3	45	Gac/Aac																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112178813	112178814	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACCTAATCTCAGTCCCACTATAGAGTATAATGATGGAAGA			P-0007095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	73	392	0	ENST00000257430.4:c.7524_7564dup	p.Pro2522HisfsTer8	p.P2522Hfs*8	ENST00000257430	NM_000038.5	2508	cca/cCACCTAATCTCAGTCCCACTATAGAGTATAATGATGGAAGAca																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89448551	89448551	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	319	514	0	ENST00000336596.2:c.1515C>G	p.Tyr505Ter	p.Y505*	ENST00000336596	NM_005233.5	505	taC/taG																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578470	7578502	+	inframe_deletion	In_Frame_Del	DEL	CGGGCGGGGGTGTGGAATCAACCCACAGCTGCA	CGGGCGGGGGTGTGGAATCAACCCACAGCTGCA	-			P-0010224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	244	341	0	ENST00000269305.4:c.428_460del	p.Val143_Pro153del	p.V143_P153del	ENST00000269305	NM_001126112.2	143	gTGCAGCTGTGGGTTGATTCCACACCCCCGCCCGgc/ggc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49039493	49039494	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	285	388	0	ENST00000267163.4:c.2480dup	p.Arg828LysfsTer10	p.R828Kfs*10	ENST00000267163	NM_000321.2	826	-/C																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	62	306	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	72	242	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	122	495	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66729181	66729181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	92	492	0	ENST00000307102.5:c.389A>G	p.Tyr130Cys	p.Y130C	ENST00000307102	NM_002755.3	130	tAt/tGt																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17122487	17122487	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	136	673	0	ENST00000285071.4:c.908del	p.Glu303GlyfsTer20	p.E303Gfs*20	ENST00000285071	NM_144997.5	303	gAg/gg																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71026116	71026117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGT			P-0011380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	47	400	0	ENST00000318789.4:c.1502_1505dup	p.Phe502LeufsTer16	p.F502Lfs*16	ENST00000318789	NM_032682.5	502	ttc/ttACTTc																																												NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436296	110436297	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGG	rs34412495		P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	20	77	1	ENST00000375856.3:c.2102_2104dup	p.Ala701dup	p.A701dup	ENST00000375856	NM_003749.2	701	gtg/gCCGtg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	424	517	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89528645	89528645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	277	360	0	ENST00000336596.2:c.2945C>A	p.Pro982His	p.P982H	ENST00000336596	NM_005233.5	982	cCc/cAc																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119582334	119582334	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	167	507	0	ENST00000316626.5:c.1067T>G	p.Leu356Ter	p.L356*	ENST00000316626		356	tTa/tGa																																												NEWRECORD																																		
FOXL2	0	MSKCC	GRCh37	3	138665386	138665386	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	579	408	0	ENST00000330315.3:c.179T>C	p.Val60Ala	p.V60A	ENST00000330315	NM_023067.3	60	gTg/gCg																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106158255	106158255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	386	502	0	ENST00000380013.4:c.3156G>T	p.Lys1052Asn	p.K1052N	ENST00000380013	NM_001127208.2	1052	aaG/aaT																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630081	187630081	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	531	533	1	ENST00000441802.2:c.901C>T	p.Gln301Ter	p.Q301*	ENST00000441802	NM_005245.3	301	Cag/Tag																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56189427	56189427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	243	532	1	ENST00000399503.3:c.4459C>T	p.Arg1487Cys	p.R1487C	ENST00000399503	NM_005921.1	1487	Cgt/Tgt																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138199870	138199870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	43	332	0	ENST00000237289.4:c.1288C>A	p.Leu430Ile	p.L430I	ENST00000237289	NM_001270507.1	430	Ctc/Atc																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435548	18435548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	311	392	0	ENST00000266497.5:c.533C>A	p.Thr178Lys	p.T178K	ENST00000266497		178	aCa/aAa																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57864354	57864354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1499	304	728	1	ENST00000228682.2:c.1831C>T	p.Arg611Trp	p.R611W	ENST00000228682	NM_005269.2	611	Cgg/Tgg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49027127	49027127	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	399	465	0	ENST00000267163.4:c.1696-2A>T		p.X566_splice	ENST00000267163	NM_000321.2	566																																													NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858550	9858550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	399	577	0	ENST00000330684.3:c.2851G>T	p.Gly951Trp	p.G951W	ENST00000330684	NM_001134407.1	951	Ggg/Tgg																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30134488	30134488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	153	469	0	ENST00000263025.4:c.43C>G	p.Arg15Gly	p.R15G	ENST00000263025	NM_002746.2	15	Cgt/Ggt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	422	502	0	ENST00000269305.4:c.892G>C	p.Glu298Gln	p.E298Q	ENST00000269305	NM_001126112.2	298	Gag/Cag																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52714643	52714643	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	651	454	0	ENST00000322088.6:c.401G>C	p.Arg134Pro	p.R134P	ENST00000322088	NM_014225.5	134	cGg/cCg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41419902	41419902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	390	586	0	ENST00000373198.4:c.419G>C	p.Gly140Ala	p.G140A	ENST00000373198	NM_133170.3	140	gGg/gCg																																												NEWRECORD																																		
CRLF2	0	MSKCC	GRCh37	X	1321355	1321355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	504	534	0	ENST00000381566.1:c.400G>A	p.Val134Met	p.V134M	ENST00000381566		134	Gtg/Atg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76872105	76872105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	278	385	0	ENST00000373344.5:c.5542C>A	p.Gln1848Lys	p.Q1848K	ENST00000373344	NM_000489.3	1848	Cag/Aag																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	275	545	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	347	598	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241683007	241683007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	274	494	0	ENST00000366560.3:c.16C>T	p.Arg6Trp	p.R6W	ENST00000366560	NM_000143.3	6	Cgg/Tgg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107195	27107195	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	283	486	0	ENST00000324856.7:c.6806C>G	p.Ser2269Ter	p.S2269*	ENST00000324856	NM_006015.4	2269	tCa/tGa																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061461	38061461	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	275	507	0	ENST00000250448.2:c.528C>G	p.Ile176Met	p.I176M	ENST00000250448	NM_004496.3	176	atC/atG																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68845741	68845742	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			218	288	414	2	ENST00000261769.5:c.988dup	p.Thr330AsnfsTer20	p.T330Nfs*20	ENST00000261769	NM_004360.3	329	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579714	7579714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	263	585	0	ENST00000269305.4:c.82G>A	p.Glu28Lys	p.E28K	ENST00000269305	NM_001126112.2	28	Gaa/Aaa																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2216319	2216319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	302	584	0	ENST00000398665.3:c.1963G>C	p.Glu655Gln	p.E655Q	ENST00000398665	NM_032482.2	655	Gag/Cag																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2216484	2216484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	384	699	0	ENST00000398665.3:c.2128G>A	p.Glu710Lys	p.E710K	ENST00000398665	NM_032482.2	710	Gag/Aag																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2216586	2216586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	421	708	0	ENST00000398665.3:c.2230G>A	p.Asp744Asn	p.D744N	ENST00000398665	NM_032482.2	744	Gac/Aac																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134911464	134911464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	297	608	0	ENST00000398015.3:c.1929G>C	p.Lys643Asn	p.K643N	ENST00000398015	NM_004441.4	643	aaG/aaC																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56179353	56179353	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	107	207	0	ENST00000399503.3:c.3667-1G>A		p.X1223_splice	ENST00000399503	NM_005921.1	1223																																													NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176639025	176639025	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	345	615	0	ENST00000439151.2:c.3625C>G	p.Pro1209Ala	p.P1209A	ENST00000439151	NM_022455.4	1209	Cct/Gct																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176639119	176639119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	343	563	0	ENST00000439151.2:c.3719C>G	p.Ser1240Cys	p.S1240C	ENST00000439151	NM_022455.4	1240	tCc/tGc																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148526919	148526919	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	230	428	0	ENST00000320356.2:c.385C>G	p.His129Asp	p.H129D	ENST00000320356	NM_004456.4	129	Cat/Gat																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151850018	151850018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	121	367	2	ENST00000262189.6:c.12298G>A	p.Ala4100Thr	p.A4100T	ENST00000262189	NM_170606.2	4100	Gca/Aca																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135787747	135787747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	318	509	0	ENST00000298552.3:c.835C>A	p.His279Asn	p.H279N	ENST00000298552	NM_001162426.1	279	Cac/Aac																																												NEWRECORD																																		
DUSP4	0	MSKCC	GRCh37	8	29207468	29207471	+	stop_gained	Nonsense_Mutation	ONP	CGTC	CGTC	AGTT			P-0014938-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	224	343	0	ENST00000240100.2:c.325_328delinsAACT	p.Asp109_Glu110delinsAsnTer	p.D109_E110delinsN*	ENST00000240100	NM_001394.6	109	GACGag/AACTag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	488	564	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	499	617	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	353	400	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140482926	140482927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs777474487		P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	205	569	2	ENST00000288602.6:c.1208dup	p.Ala404CysfsTer9	p.A404Cfs*9	ENST00000288602	NM_004333.4	403	cct/ccCt																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78433879	78433879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	178	534	0	ENST00000370768.2:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000370768	NM_003902.3	74	Gat/Tat																																												NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69625107	69625107	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	188	362	0	ENST00000334134.2:c.686G>C	p.Arg229Thr	p.R229T	ENST00000334134	NM_005247.2	229	aGa/aCa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44913167	44913167	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	221	922	0	ENST00000377967.4:c.842C>G	p.Pro281Arg	p.P281R	ENST00000377967	NM_021140.2	281	cCt/cGt																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25458649	25458649	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	80	519	0	ENST00000264709.3:c.2524C>T	p.Gln842Ter	p.Q842*	ENST00000264709	NM_175629.2	842	Cag/Tag																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			685	67	619	0	ENST00000418115.1:c.50G>T	p.Gly17Val	p.G17V	ENST00000418115	NM_001664.2	17	gGa/gTa																																												NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835780	68835781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	46	477	1	ENST00000261769.5:c.377dup	p.Pro127AlafsTer41	p.P127Afs*41	ENST00000261769	NM_004360.3	124	cgc/cgCc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44936059	44936068	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTAGTATT	ACCTAGTATT	-			P-0002144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			759	95	581	0	ENST00000377967.4:c.2820_2829del	p.Pro941ThrfsTer26	p.P941Tfs*26	ENST00000377967	NM_021140.2	940	acACCTAGTATT/ac																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	28	313	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	33	317	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0003613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	37	230	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29012389	29012389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	29	313	1	ENST00000282397.4:c.482C>T	p.Thr161Met	p.T161M	ENST00000282397	NM_002019.4	161	aCg/aTg																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50467670	50467670	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	31	343	0	ENST00000331340.3:c.905A>G	p.Glu302Gly	p.E302G	ENST00000331340	NM_006060.4	302	gAg/gGg																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39729894	39729894	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	46	379	1	ENST00000361337.2:c.1209A>C	p.Glu403Asp	p.E403D	ENST00000361337	NM_003286.2	403	gaA/gaC																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41522006	41522006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	25	368	0	ENST00000263253.7:c.868G>A	p.Asp290Asn	p.D290N	ENST00000263253	NM_001429.3	290	Gac/Aac																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117835	70117836	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	59	328	0	ENST00000245479.2:c.305dup	p.Pro103AlafsTer149	p.P103Afs*149	ENST00000245479	NM_000346.3	101	-/A																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	182	380	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	263	547	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	160	346	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227661845	227661845	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	184	334	0	ENST00000305123.5:c.1610A>G	p.Gln537Arg	p.Q537R	ENST00000305123	NM_005544.2	537	cAg/cGg																																												NEWRECORD																																		
MYD88	0	MSKCC	GRCh37	3	38180165	38180165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	119	248	0	ENST00000396334.3:c.13C>T	p.Arg5Cys	p.R5C	ENST00000396334	NM_002468.4	5	Cgc/Tgc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	74	129	0	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67063672	67063672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	215	349	0	ENST00000412916.2:c.121C>T	p.Gln41Ter	p.Q41*	ENST00000412916		41	Cag/Tag																																												NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411246	63411246	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	311	258	0	ENST00000330258.3:c.1921C>T	p.Arg641Ter	p.R641*	ENST00000330258	NM_152424.3	641	Cga/Tga																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098885	178098886	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	210	459	0	ENST00000397062.3:c.159dupA	p.Leu54ThrfsTer2	p.L54Tfs*2	ENST00000397062	NM_006164.4	53	-/A																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67522799	67522800	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0005908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	131	309	1	ENST00000274335.5:c.297_298dup	p.Gly100GlufsTer15	p.G100Efs*15	ENST00000274335		99	cca/ccAGa																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	143	731	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	54	500	5	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	107	191	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																												NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	20	402	1	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	62	732	0	ENST00000397062.3:c.246A>T	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaT																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	8	234	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																												NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	156	707	2	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																												NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	76	586	7	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101401	27101402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	136	860	0	ENST00000324856.7:c.4689dup	p.Met1564HisfsTer8	p.M1564Hfs*8	ENST00000324856	NM_006015.4	1561	-/C																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	39	402	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	40	512	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508082	106508082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	61	237	1	ENST00000359195.3:c.76C>T	p.Arg26Cys	p.R26C	ENST00000359195	NM_002649.2	26	Cgc/Tgc																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	73	876	1	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																												NEWRECORD																																		
JAK3	3718	MSKCC	GRCh37	19	17955112	17955112	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1260547510		P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	125	558	2	ENST00000458235.1:c.115del	p.Gln39SerfsTer108	p.Q39Sfs*108	ENST00000458235	NM_000215.3	39	Cag/ag																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	42	464	0	ENST00000409792.3:c.843delA	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37055943	37055943	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	44	573	0	ENST00000231790.2:c.698G>A	p.Cys233Tyr	p.C233Y	ENST00000231790	NM_000249.3	233	tGt/tAt																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266840	41266840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	27	469	0	ENST00000349496.5:c.511G>A	p.Ala171Thr	p.A171T	ENST00000349496	NM_001904.3	171	Gct/Act																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916903	178916903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	56	1238	2	ENST00000263967.3:c.290C>A	p.Pro97His	p.P97H	ENST00000263967	NM_006218.2	97	cCc/cAc																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149501499	149501499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	32	871	0	ENST00000261799.4:c.2288A>G	p.Tyr763Cys	p.Y763C	ENST00000261799	NM_002609.3	763	tAt/tGt																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20481529	20481529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	75	552	0	ENST00000346618.3:c.598G>T	p.Gly200Trp	p.G200W	ENST00000346618	NM_001949.4	200	Ggg/Tgg																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140624413	140624413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	91	178	0	ENST00000288602.6:c.91G>A	p.Ala31Thr	p.A31T	ENST00000288602	NM_004333.4	31	Gcc/Acc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89685289	89685289	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	36	199	0	ENST00000371953.3:c.184A>T	p.Lys62Ter	p.K62*	ENST00000371953	NM_000314.4	62	Aaa/Taa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821425	72821425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	55	1458	3	ENST00000268489.5:c.10750G>A	p.Ala3584Thr	p.A3584T	ENST00000268489	NM_006885.3	3584	Gca/Aca																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17117082	17117082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	162	738	5	ENST00000285071.4:c.1627G>A	p.Glu543Lys	p.E543K	ENST00000285071	NM_144997.5	543	Gag/Aag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44820532	44820532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	33	627	0	ENST00000377967.4:c.229G>A	p.Val77Ile	p.V77I	ENST00000377967	NM_021140.2	77	Gtt/Att																																												NEWRECORD																																		
CCND1	0	MSKCC	GRCh37	11	69466003	69466038	+	inframe_deletion	In_Frame_Del	DEL	GTGGACCTGGCTTGCACACCCACCGACGTGCGGGAC	GTGGACCTGGCTTGCACACCCACCGACGTGCGGGAC	-			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	87	707	1	ENST00000227507.2:c.847_882del	p.Leu283_Asp294del	p.L283_D294del	ENST00000227507	NM_053056.2	281	GTGGACCTGGCTTGCACACCCACCGACGTGCGGGAC/-																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49443915	49443916	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	153	570	0	ENST00000301067.7:c.3455_3456insA	p.Val1153CysfsTer31	p.V1153Cfs*31	ENST00000301067	NM_003482.3	1152	cct/ccAt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023968	27023975	+	frameshift_variant	Frame_Shift_Del	DEL	CCACGCGC	CCACGCGC	-			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	47	154	0	ENST00000324856.7:c.1077_1084del	p.Ala360GlufsTer37	p.A360Efs*37	ENST00000324856	NM_006015.4	358	caCCACGCGCcc/cacc																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	70008516	70008516	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	67	359	0	ENST00000352241.4:c.1109delA	p.Asn370ThrfsTer43	p.N370Tfs*43	ENST00000352241	NM_198159.2	369	gAa/ga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	287	497	2	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55211065	55211065	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	555	413	0	ENST00000275493.2:c.308A>T	p.Asn103Ile	p.N103I	ENST00000275493	NM_005228.3	103	aAc/aTc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246224	46246224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			726	85	357	0	ENST00000334344.6:c.4318C>G	p.Gln1440Glu	p.Q1440E	ENST00000334344	NM_152641.2	1440	Cag/Gag																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48923160	48923160	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	154	311	0	ENST00000267163.4:c.607+1G>T		p.X203_splice	ENST00000267163	NM_000321.2	203																																													NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	348223	348223	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	50	201	0	ENST00000262320.3:c.1283C>A	p.Ser428Ter	p.S428*	ENST00000262320	NM_003502.3	428	tCg/tAg																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89831395	89831395	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	80	369	0	ENST00000389301.3:c.2681G>C	p.Arg894Thr	p.R894T	ENST00000389301	NM_000135.2	894	aGa/aCa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29490319	29490319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			822	254	377	1	ENST00000358273.4:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000358273	NM_001042492.2	135	cGg/cAg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49444487	49444488	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	230	253	0	ENST00000301067.7:c.2883dup	p.Gly962TrpfsTer7	p.G962Wfs*7	ENST00000301067	NM_003482.3	961	-/T																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	153	356	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	89	221	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30681828	30681828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	184	350	0	ENST00000376406.3:c.269G>T	p.Arg90Leu	p.R90L	ENST00000376406	NM_014641.2	90	cGa/cTa																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974690	21974691	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACCGT			P-0007276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	120	307	0	ENST00000304494.5:c.131_136dup	p.Gly45_Arg46insHisGly	p.G45_R46insHG	ENST00000304494	NM_000077.4	46	cgg/cACGGTCgg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974690	21974691	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACCGT			P-0007276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	120	307	0	ENST00000304494.5:c.131_136dup	p.Gly45_Arg46insHisGly	p.G45_R46insHG	ENST00000304494	NM_000077.4	46	cgg/cACGGTCgg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	146	638	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183825	10183825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	117	337	2	ENST00000256474.2:c.294C>A	p.Tyr98Ter	p.Y98*	ENST00000256474	NM_000551.3	98	taC/taA																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993300	72993300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	185	904	1	ENST00000268489.5:c.745G>A	p.Gly249Ser	p.G249S	ENST00000268489	NM_006885.3	249	Ggt/Agt																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47058705	47058706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	117	564	0	ENST00000409792.3:c.7572dup	p.Lys2525Ter	p.K2525*	ENST00000409792	NM_014159.6	2524	-/T																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30143399	30143399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	47	319	1	ENST00000389048.3:c.127C>T	p.Pro43Ser	p.P43S	ENST00000389048	NM_004304.4	43	Cca/Tca																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48025961	48025961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	235	791	0	ENST00000234420.5:c.839G>A	p.Ser280Asn	p.S280N	ENST00000234420	NM_000179.2	280	aGt/aAt																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53223905	53223905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	148	327	0	ENST00000375401.3:c.3454del	p.Glu1152ArgfsTer112	p.E1152Rfs*112	ENST00000375401	NM_004187.3	1152	Gag/ag																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52696263	52696266	+	frameshift_variant	Frame_Shift_Del	DEL	GCAA	GCAA	-			P-0012279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	189	621	0	ENST00000394830.3:c.411_414del	p.Cys138AsnfsTer35	p.C138Nfs*35	ENST00000394830	NM_018313.4	137	gcTTGC/gc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116414995	116415006	+	inframe_deletion	In_Frame_Del	DEL	ACATGTCCCCCA	ACATGTCCCCCA	-			P-0012279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	286	704	0	ENST00000397752.3:c.3089_3100del	p.Asp1030_Ile1034delinsVal	p.D1030_I1034delinsV	ENST00000397752	NM_000245.2	1030	gACATGTCCCCCAtc/gtc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	80	423	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																												NEWRECORD																																		
NPM1	0	MSKCC	GRCh37	5	170818346	170818346	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	27	490	0	ENST00000296930.5:c.176T>C	p.Ile59Thr	p.I59T	ENST00000296930	NM_002520.6	59	aTt/aCt																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10191482	10191497	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGAGCGATGCCTCC	AAAGAGCGATGCCTCC	-			P-0007854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	29	367	0	ENST00000256474.2:c.476_491del	p.Lys159ArgfsTer6	p.K159Rfs*6	ENST00000256474	NM_000551.3	159	AAAGAGCGATGCCTCCag/ag																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436863	52436872	+	frameshift_variant	Frame_Shift_Del	DEL	CACACTTCAG	CACACTTCAG	-			P-0007854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	33	446	0	ENST00000460680.1:c.1906_1915del	p.Leu636TrpfsTer16	p.L636Wfs*16	ENST00000460680	NM_004656.3	636	CTGAAGTGTGtg/tg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	192	150	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10597395	10597395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	247	231	0	ENST00000171111.5:c.1808G>T	p.Gly603Val	p.G603V	ENST00000171111	NM_203500.1	603	gGg/gTg																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26031964	26031964	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	296	181	0	ENST00000244661.2:c.325A>G	p.Asn109Asp	p.N109D	ENST00000244661	NM_003537.3	109	Aac/Gac																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220705	1220706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	116	318	0	ENST00000326873.7:c.727dup	p.Val243GlyfsTer23	p.V243Gfs*23	ENST00000326873	NM_000455.4	241	-/G																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	574	439	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	341	479	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	209	594	1	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173926	112173926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	347	487	0	ENST00000257430.4:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000257430	NM_000038.5	879	Cag/Tag																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9782128	9782128	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	104	681	0	ENST00000377346.4:c.2151G>T	p.Leu717Phe	p.L717F	ENST00000377346	NM_005026.3	717	ttG/ttT																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174355	112174355	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	204	379	0	ENST00000257430.4:c.3064G>C	p.Asp1022His	p.D1022H	ENST00000257430	NM_000038.5	1022	Gat/Cat																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32188853	32188853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192478549		P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	419	625	0	ENST00000375023.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000375023	NM_004557.3	234	cGg/cAg																																												NEWRECORD																																		
CDKN2B	0	MSKCC	GRCh37	9	22006218	22006218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	135	403	1	ENST00000276925.6:c.185C>T	p.Ala62Val	p.A62V	ENST00000276925	NM_004936.3	62	gCg/gTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578547	7578560	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGGGAGTACTGTAG	GGGGAGTACTGTAG	-			P-0007303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	666	584	0	ENST00000269305.4:c.376-6_383del		p.X126_splice	ENST00000269305	NM_001126112.2	126																																													NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	649	414	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111499	8111500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1165	200	643	0	ENST00000346208.3:c.987dup	p.Arg330GlufsTer22	p.R330Efs*22	ENST00000346208		329	agg/aGgg																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64129169	64129169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	231	616	1	ENST00000334205.4:c.707C>T	p.Ser236Leu	p.S236L	ENST00000334205	NM_003942.2	236	tCg/tTg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16199339	16199339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	123	319	0	ENST00000375759.3:c.112C>T	p.Leu38Phe	p.L38F	ENST00000375759	NM_015001.2	38	Ctt/Ttt																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120483247	120483263	+	frameshift_variant	Frame_Shift_Del	DEL	TCCCTCATTCAGGCATG	TCCCTCATTCAGGCATG	-			P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	262	429	0	ENST00000256646.2:c.3098_3114del	p.Pro1033HisfsTer4	p.P1033Hfs*4	ENST00000256646	NM_024408.3	1033	cCATGCCTGAATGAGGGA/c																																												NEWRECORD																																		
WHSC1	0	MSKCC	GRCh37	4	1961416	1961416	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	337	571	0	ENST00000382891.5:c.3204C>G	p.Ile1068Met	p.I1068M	ENST00000382891	NM_133335.3	1068	atC/atG																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630152	187630152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014814-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	203	519	0	ENST00000441802.2:c.830C>G	p.Thr277Arg	p.T277R	ENST00000441802	NM_005245.3	277	aCa/aGa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	54	142	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	130	295	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713807	30713807	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	117	357	0	ENST00000359013.4:c.1207A>T	p.Arg403Trp	p.R403W	ENST00000359013	NM_001024847.2	403	Agg/Tgg																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88472442	88472442	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	89	447	0	ENST00000360948.2:c.2113T>C	p.Tyr705His	p.Y705H	ENST00000360948	NM_001012338.2	705	Tac/Cac																																												NEWRECORD																																		
RAD51D	0	MSKCC	GRCh37	17	33446156	33446161	+	inframe_deletion	In_Frame_Del	DEL	CTACCT	CTACCT	-			P-0010588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	46	456	0	ENST00000335858.7:c.113_118del	p.Glu38_Val39del	p.E38_V39del	ENST00000335858	NM_133629.2	38	gAGGTAGct/gct																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187540440	187540441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	68	261	0	ENST00000441802.2:c.7299_7300insA	p.Asp2434ArgfsTer3	p.D2434Rfs*3	ENST00000441802	NM_005245.3	2433	-/A																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	113	285	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123258035	123258035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	84	560	0	ENST00000358487.5:c.1646A>G	p.Asn549Ser	p.N549S	ENST00000358487	NM_000141.4	549	aAt/aGt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46287449	46287449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	73	515	0	ENST00000334344.6:c.5308C>G	p.Leu1770Val	p.L1770V	ENST00000334344	NM_152641.2	1770	Cta/Gta																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7989385	7989385	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200663524		P-0007356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	91	381	2	ENST00000319144.4:c.301G>A	p.Ala101Thr	p.A101T	ENST00000319144	NM_001139.2	101	Gcc/Acc																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46265024	46265024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	51	748	1	ENST00000371998.3:c.1894C>T	p.Arg632Trp	p.R632W	ENST00000371998		632	Cgg/Tgg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76855268	76855268	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	61	299	0	ENST00000373344.5:c.5719A>G	p.Met1907Val	p.M1907V	ENST00000373344	NM_000489.3	1907	Atg/Gtg																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123211849	123211849	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	50	269	0	ENST00000218089.9:c.2716A>T	p.Lys906Ter	p.K906*	ENST00000218089	NM_001042749.1	906	Aaa/Taa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579314	7579342	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGCAAGTCACAGACTTGGCTGTCCCAGAA	TGCAAGTCACAGACTTGGCTGTCCCAGAA	-			P-0007356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	65	278	0	ENST00000269305.4:c.345_373del	p.Ser116ValfsTer23	p.S116Vfs*23	ENST00000269305	NM_001126112.2	115	caTTCTGGGACAGCCAAGTCTGTGACTTGCAcg/cacg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49427026	49427027	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	57	281	0	ENST00000301067.7:c.11461dup	p.Gln3821ProfsTer191	p.Q3821Pfs*191	ENST00000301067	NM_003482.3	3821	cag/cCag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44923008	44923008	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	46	273	0	ENST00000377967.4:c.1870del	p.Leu624Ter	p.L624*	ENST00000377967	NM_021140.2	623	aaC/aa																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	48	505	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0002268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	80	660	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41547958	41547958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	64	500	0	ENST00000263253.7:c.2939C>T	p.Ala980Val	p.A980V	ENST00000263253	NM_001429.3	980	gCc/gTc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108173695	108173696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	42	484	0	ENST00000278616.4:c.5441dup	p.Leu1814PhefsTer9	p.L1814Ffs*9	ENST00000278616	NM_000051.3	1812	gct/gcTt																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119730	70119731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	115	595	0	ENST00000245479.2:c.733dup	p.Val245GlyfsTer7	p.V245Gfs*7	ENST00000245479	NM_000346.3	244	-/G																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	125	557	4	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	68	263	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	60	302	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	86	307	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	150	379	0	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																												NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98209616	98209617	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761353734		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	60	243	0	ENST00000331920.6:c.3921dup	p.Arg1308GlnfsTer17	p.R1308Qfs*17	ENST00000331920	NM_000264.3	1307	-/C																																												NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	63	199	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	12	190	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	177	463	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	142	381	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																												NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19261529	19261529	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	120	428	0	ENST00000162023.5:c.16del	p.Ile6SerfsTer14	p.I6Sfs*14	ENST00000162023		6	Atc/tc																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	176015428	176015428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	111	389	0	ENST00000367669.3:c.1310C>T	p.Ala437Val	p.A437V	ENST00000367669	NM_022457.5	437	gCg/gTg																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49933240	49933240	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143096514		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	209	499	2	ENST00000296474.3:c.2870C>T	p.Thr957Met	p.T957M	ENST00000296474	NM_002447.2	957	aCg/aTg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47161939	47161939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	57	282	0	ENST00000409792.3:c.4187del	p.Asn1396MetfsTer16	p.N1396Mfs*16	ENST00000409792	NM_014159.6	1396	aAt/at																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9784085	9784085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	126	377	2	ENST00000377346.4:c.2653G>A	p.Ala885Thr	p.A885T	ENST00000377346	NM_005026.3	885	Gcc/Acc																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47637338	47637338	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	108	485	0	ENST00000233146.2:c.472C>T	p.Gln158Ter	p.Q158*	ENST00000233146	NM_000251.2	158	Cag/Tag																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47702269	47702269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	92	428	1	ENST00000233146.2:c.1865C>A	p.Pro622Gln	p.P622Q	ENST00000233146	NM_000251.2	622	cCa/cAa																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49928036	49928036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199869962		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	91	416	0	ENST00000296474.3:c.3692G>A	p.Arg1231His	p.R1231H	ENST00000296474	NM_002447.2	1231	cGc/cAc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916838	178916838	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	79	559	0	ENST00000263967.3:c.225A>C	p.Gln75His	p.Q75H	ENST00000263967	NM_006218.2	75	caA/caC																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	235390	235390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	116	288	0	ENST00000264932.6:c.1196C>A	p.Pro399Gln	p.P399Q	ENST00000264932	NM_004168.2	399	cCg/cAg																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30672848	30672848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	199	685	1	ENST00000376406.3:c.4112C>A	p.Pro1371His	p.P1371H	ENST00000376406	NM_014641.2	1371	cCt/cAt																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93964481	93964481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	114	453	0	ENST00000369303.4:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000369303	NM_004440.3	806	Gaa/Aaa																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099080	157099080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	55	125	0	ENST00000346085.5:c.17G>C	p.Gly6Ala	p.G6A	ENST00000346085	NM_020732.3	6	gGc/gCc																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117864801	117864801	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	111	407	0	ENST00000297338.2:c.1308G>C	p.Gln436His	p.Q436H	ENST00000297338	NM_006265.2	436	caG/caC																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43596068	43596068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	105	375	1	ENST00000355710.3:c.235C>T	p.Arg79Trp	p.R79W	ENST00000355710	NM_020975.4	79	Cgg/Tgg																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852292	63852292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	109	313	0	ENST00000279873.7:c.3070G>A	p.Ala1024Thr	p.A1024T	ENST00000279873	NM_032199.2	1024	Gca/Aca																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64137198	64137198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	127	330	0	ENST00000334205.4:c.1630G>A	p.Gly544Arg	p.G544R	ENST00000334205	NM_003942.2	544	Ggg/Agg																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100909984	100909984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	121	469	0	ENST00000325455.5:c.2665C>A	p.Leu889Met	p.L889M	ENST00000325455	NM_001202474.3	889	Ctg/Atg																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118307646	118307646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	45	148	0	ENST00000534358.1:c.419G>T	p.Gly140Val	p.G140V	ENST00000534358	NM_005933.3	140	gGc/gTc																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	416796	416796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	109	404	0	ENST00000399788.2:c.3754C>T	p.Arg1252Cys	p.R1252C	ENST00000399788	NM_001042603.1	1252	Cgt/Tgt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49416647	49416647	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	93	284	0	ENST00000301067.7:c.16064T>G	p.Leu5355Arg	p.L5355R	ENST00000301067	NM_003482.3	5355	cTg/cGg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49433611	49433611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	109	373	0	ENST00000301067.7:c.7942C>T	p.Pro2648Ser	p.P2648S	ENST00000301067	NM_003482.3	2648	Cca/Tca																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28877305	28877305	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	89	229	0	ENST00000282397.4:c.4016A>G	p.Ter1339TrpextTer20	p.*1339Wext*20	ENST00000282397	NM_002019.4	1339	tAg/tGg																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95577766	95577766	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	114	354	0	ENST00000343455.3:c.2144T>C	p.Val715Ala	p.V715A	ENST00000343455	NM_177438.2	715	gTt/gCt																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007792	45007792	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	64	317	0	ENST00000558401.1:c.239G>A	p.Trp80Ter	p.W80*	ENST00000558401	NM_004048.2	80	tGg/tAg																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91354607	91354607	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	121	486	0	ENST00000355112.3:c.4047A>C	p.Lys1349Asn	p.K1349N	ENST00000355112	NM_000057.2	1349	aaA/aaC																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99486163	99486163	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	52	306	0	ENST00000268035.6:c.3469A>G	p.Thr1157Ala	p.T1157A	ENST00000268035	NM_000875.3	1157	Acg/Gcg																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2224023	2224023	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	111	461	0	ENST00000326181.6:c.1237A>G	p.Ser413Gly	p.S413G	ENST00000326181	NM_032271.2	413	Agt/Ggt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72845511	72845511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	203	502	0	ENST00000268489.5:c.3829G>A	p.Val1277Met	p.V1277M	ENST00000268489	NM_006885.3	1277	Gtg/Atg																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89816187	89816187	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	94	354	0	ENST00000389301.3:c.3190A>G	p.Ser1064Gly	p.S1064G	ENST00000389301	NM_000135.2	1064	Agc/Ggc																																												NEWRECORD																																		
RAD51D	0	MSKCC	GRCh37	17	33430327	33430327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	149	422	0	ENST00000335858.7:c.348G>A	p.Met116Ile	p.M116I	ENST00000335858	NM_133629.2	116	atG/atA																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37883770	37883770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	138	406	0	ENST00000269571.5:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000269571		1128	Gtt/Att																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10249155	10249155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	141	367	0	ENST00000340748.4:c.4027G>A	p.Val1343Met	p.V1343M	ENST00000340748		1343	Gtg/Atg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15278185	15278185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	146	389	0	ENST00000263388.2:c.5237A>G	p.Asp1746Gly	p.D1746G	ENST00000263388	NM_000435.2	1746	gAt/gGt																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17943670	17943670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	109	339	0	ENST00000458235.1:c.2419C>T	p.Gln807Ter	p.Q807*	ENST00000458235	NM_000215.3	807	Cag/Tag																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42843771	42843771	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	101	341	0	ENST00000398585.3:c.1148T>C	p.Ile383Thr	p.I383T	ENST00000398585	NM_001135099.1	383	aTt/aCt																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63409784	63409784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	113	457	1	ENST00000330258.3:c.3383C>T	p.Ala1128Val	p.A1128V	ENST00000330258	NM_152424.3	1128	gCc/gTc																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411678	63411678	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	119	441	0	ENST00000330258.3:c.1489C>T	p.Arg497Ter	p.R497*	ENST00000330258	NM_152424.3	497	Cga/Tga																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9523310	9523311	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	116	402	0	ENST00000353224.5:c.1926dupC	p.Tyr643LeufsTer4	p.Y643Lfs*4	ENST00000353224	NM_177990.2	642	-/C																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114710595	114710597	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs754968616		P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	212	511	1	ENST00000543371.1:c.85_87del	p.Glu29del	p.E29del	ENST00000543371	NM_001198531.1	27	cAGGag/cag																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17742462	17742463	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	106	390	0	ENST00000250003.3:c.650dup	p.Ser218GlufsTer60	p.S218Efs*60	ENST00000250003	NM_002478.4	215	ggc/ggCc																																												NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139400023	139400023	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	68	307	1	ENST00000277541.6:c.4325del	p.Pro1442ArgfsTer3	p.P1442Rfs*3	ENST00000277541	NM_017617.3	1442	cCg/cg																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14041976	14041977	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	53	301	0	ENST00000311895.7:c.2526_2527del	p.Lys843ValfsTer2	p.K843Vfs*2	ENST00000311895	NM_005236.2	841	tcAGag/tcag																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45368256	45368256	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	70	411	0	ENST00000262160.6:c.1346del	p.Leu449TrpfsTer5	p.L449Wfs*5	ENST00000262160	NM_005901.5	449	tTg/tg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	98	312	3	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42795269	42795269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	92	321	0	ENST00000575354.2:c.2353delG	p.Ala785ProfsTer139	p.A785Pfs*139	ENST00000575354	NM_015125.3	783	caG/ca																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	102	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176636973	176636973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	65	356	0	ENST00000439151.2:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000439151	NM_022455.4	525	Cgg/Tgg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577106	7577107	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAGGC			P-0003006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	104	526	0	ENST00000269305.4:c.826_831dup	p.Ala276_Cys277dup	p.A276_C277dup	ENST00000269305	NM_001126112.2	276	-/GCCTGT																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435675	56435676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TAGGC			P-0003006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	34	211	0	ENST00000407977.2:c.1457_1461dup	p.Gln488AlafsTer16	p.Q488Afs*16	ENST00000407977		487	-/GCCTA																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0005647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	83	195	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																												NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207153	1207155	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1414068445		P-0005647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1307	156	380	0	ENST00000326873.7:c.250_252del	p.Lys84del	p.K84del	ENST00000326873	NM_000455.4	81	AAG/-																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29562657	29562660	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0005647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1406	164	351	0	ENST00000358273.4:c.3739_3742delTTTG	p.Phe1247IlefsTer18	p.F1247Ifs*18	ENST00000358273	NM_001042492.2	1246	cTGTTt/ct																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25470497	25470497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	99	305	1	ENST00000264709.3:c.977G>A	p.Arg326His	p.R326H	ENST00000264709	NM_175629.2	326	cGc/cAc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49425230	49425230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199797812		P-0005647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	105	289	0	ENST00000301067.7:c.13258C>T	p.Arg4420Trp	p.R4420W	ENST00000301067	NM_003482.3	4420	Cgg/Tgg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29684326	29684326	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1276	149	312	0	ENST00000358273.4:c.7909C>T	p.Arg2637Ter	p.R2637*	ENST00000358273	NM_001042492.2	2637	Cga/Tga																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86564530	86564530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	112	268	0	ENST00000274376.6:c.266del	p.Gly89GlufsTer7	p.G89Efs*7	ENST00000274376	NM_002890.2	88	Ggg/gg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29560085	29560087	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0005647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1237	139	334	1	ENST00000358273.4:c.3565_3567del	p.Gln1189del	p.Q1189del	ENST00000358273	NM_001042492.2	1188	CAA/-																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86564712	86564712	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	91	311	0	ENST00000274376.6:c.446del	p.Gly149AlafsTer25	p.G149Afs*25	ENST00000274376	NM_002890.2	148	gcG/gc																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37092023	37092036	+	frameshift_variant	Frame_Shift_Del	DEL	AACACATTGTCTAT	AACACATTGTCTAT	G			P-0005647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	114	325	0	ENST00000231790.2:c.2150_2163delinsG	p.Glu717GlyfsTer62	p.E717Gfs*62	ENST00000231790	NM_000249.3	717	gAACACATTGTCTAT/gG																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	315	379	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	395910	395910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	300	526	0	ENST00000380956.4:c.467C>T	p.Thr156Met	p.T156M	ENST00000380956	NM_001195286.1	156	aCg/aTg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11316069	11316069	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	227	335	0	ENST00000361445.4:c.685C>T	p.Gln229Ter	p.Q229*	ENST00000361445	NM_004958.3	229	Cag/Tag																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11316081	11316081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	247	366	0	ENST00000361445.4:c.673C>G	p.Pro225Ala	p.P225A	ENST00000361445	NM_004958.3	225	Ccg/Gcg																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64572201	64572201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	170	441	2	ENST00000337652.1:c.1453C>T	p.Arg485Trp	p.R485W	ENST00000337652	NM_130803.2	485	Cgg/Tgg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610211	10610211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	776	628	0	ENST00000171111.5:c.499G>T	p.Val167Phe	p.V167F	ENST00000171111	NM_203500.1	167	Gtt/Ttt																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207090	1207091	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	748	581	1	ENST00000326873.7:c.179dupA	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	tac/tAac																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47041201	47041202	+	frameshift_variant	Frame_Shift_Ins	INS	CC	CC	TAT			P-0005024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	376	325	0	ENST00000329236.7:c.1395_1396delinsTAT	p.His466IlefsTer3	p.H466Ifs*3	ENST00000329236	NM_001204466.1	465	acCCat/acTATat																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	193	96	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151875096	151875097	+	splice_acceptor_variant	Splice_Site	INS	-	-	T			P-0000658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	63	107	2	ENST00000262189.6:c.7443-2dupA		p.X2481_splice	ENST00000262189	NM_170606.2	2481																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0000658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	337	537	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16049715	16049716	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0000658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	939	715	0	ENST00000268712.3:c.1056_1057delAA	p.Glu354ThrfsTer21	p.E354Tfs*21	ENST00000268712	NM_006311.3	352	caAAga/caga																																												NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	376	409	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																												NEWRECORD																																		
FGF4	0	MSKCC	GRCh37	11	69588123	69588123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	105	659	3	ENST00000168712.1:c.575G>A	p.Arg192Gln	p.R192Q	ENST00000168712	NM_002007.2	192	cGa/cAa																																												NEWRECORD																																		
FGF19	0	MSKCC	GRCh37	11	69518482	69518482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	70	204	0	ENST00000294312.3:c.163C>T	p.Leu55Phe	p.L55F	ENST00000294312	NM_005117.2	55	Ctc/Ttc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32911338	32911338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	246	1058	0	ENST00000380152.3:c.2846A>G	p.Tyr949Cys	p.Y949C	ENST00000380152		949	tAt/tGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579393	7579408	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGACAGAAGATGAC	AGGGACAGAAGATGAC	-			P-0009356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	168	424	0	ENST00000269305.4:c.279_294del	p.Ser94ProfsTer24	p.S94Pfs*24	ENST00000269305	NM_001126112.2	93	ctGTCATCTTCTGTCCCT/ct																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023269	27023292	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCGGCAGCAGCGATGGGGTGGG	TGGCGGCAGCAGCGATGGGGTGGG	C			P-0009356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	59	236	0	ENST00000324856.7:c.375_398delinsC	p.Gly127AlafsTer265	p.G127Afs*265	ENST00000324856	NM_006015.4	125	ggTGGCGGCAGCAGCGATGGGGTGGGg/ggCg																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18278049	18278049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	73	346	0	ENST00000222254.8:c.1669G>T	p.Asp557Tyr	p.D557Y	ENST00000222254	NM_005027.3	557	Gac/Tac																																												NEWRECORD																																		
MCL1	0	MSKCC	GRCh37	1	150549945	150549945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	72	157	0	ENST00000369026.2:c.959A>G	p.His320Arg	p.H320R	ENST00000369026	NM_021960.4	320	cAt/cGt																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30729893	30729893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	48	222	0	ENST00000359013.4:c.1489C>A	p.Pro497Thr	p.P497T	ENST00000359013	NM_001024847.2	497	Cct/Act																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259489	89259489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	160	516	0	ENST00000336596.2:c.633G>T	p.Met211Ile	p.M211I	ENST00000336596	NM_005233.5	211	atG/atT																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115919	8115920	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	53	189	0	ENST00000346208.3:c.1266dup	p.His423AlafsTer84	p.H423Afs*84	ENST00000346208		422	atg/atGg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	161	465	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	176	414	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			199	110	314	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	138	348	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29559780	29559780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			319	145	288	0	ENST00000358273.4:c.3377A>G	p.Gln1126Arg	p.Q1126R	ENST00000358273	NM_001042492.2	1126	cAa/cGa																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1293439	1293439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	43	552	0	ENST00000310581.5:c.1562G>A	p.Arg521His	p.R521H	ENST00000310581	NM_198253.2	521	cGc/cAc																																												NEWRECORD																																		
DROSHA	0	MSKCC	GRCh37	5	31410856	31410856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	215	486	0	ENST00000344624.3:c.3664G>A	p.Glu1222Lys	p.E1222K	ENST00000344624		1222	Gaa/Aaa																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589214	67589215	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACA			P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	120	321	0	ENST00000274335.5:c.1202_1203insACA	p.Val401_Val402insGln	p.V401_V402insQ	ENST00000274335		401	gtg/gtACAg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039405	47039405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015020-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	48	321	0	ENST00000329236.7:c.797G>A	p.Arg266His	p.R266H	ENST00000329236	NM_001204466.1	266	cGc/cAc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005623-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			403	232	380	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005623-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			446	455	546	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005623-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1427	475	776	2	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266013	41266355	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTA	ATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTA	-			P-0005623-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			317	138	348	0	ENST00000349496.5:c.15_242-85del		p.X5_splice	ENST00000349496	NM_001904.3	5																																													NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248320	59248321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTGC			P-0005623-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			94	64	81	0	ENST00000371222.2:c.418_422dup	p.Met142GlnfsTer8	p.M142Qfs*8	ENST00000371222	NM_002228.3	141	ggc/ggGCAGGc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	103	361	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	149	552	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131940507	131940507	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	132	418	0	ENST00000265335.6:c.2534A>T	p.Lys845Met	p.K845M	ENST00000265335		845	aAg/aTg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593558	48593558	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	62	226	0	ENST00000342988.3:c.1308+1G>A		p.X436_splice	ENST00000342988	NM_005359.5	436																																													NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48919252	48919253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	137	353	0	ENST00000267163.4:c.418dup	p.Thr140AsnfsTer6	p.T140Nfs*6	ENST00000267163	NM_000321.2	139	-/A																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	80	153	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	81	301	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152055756	152055756	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	22	232	1	ENST00000262189.6:c.166C>T	p.Arg56Ter	p.R56*	ENST00000262189	NM_170606.2	56	Cga/Tga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108192065	108192065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	141	330	0	ENST00000278616.4:c.6490G>C	p.Glu2164Gln	p.E2164Q	ENST00000278616	NM_000051.3	2164	Gag/Cag																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47127693	47127693	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	40	263	0	ENST00000409792.3:c.5389C>T	p.Gln1797Ter	p.Q1797*	ENST00000409792	NM_014159.6	1797	Cag/Tag																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11317160	11317160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	154	416	0	ENST00000361445.4:c.334C>T	p.Arg112Trp	p.R112W	ENST00000361445	NM_004958.3	112	Cgg/Tgg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16256933	16256933	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	155	363	0	ENST00000375759.3:c.4198G>T	p.Glu1400Ter	p.E1400*	ENST00000375759	NM_015001.2	1400	Gaa/Taa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16257290	16257290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	140	355	0	ENST00000375759.3:c.4555G>A	p.Glu1519Lys	p.E1519K	ENST00000375759	NM_015001.2	1519	Gag/Aag																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120469217	120469217	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	206	304	0	ENST00000256646.2:c.3910T>C	p.Phe1304Leu	p.F1304L	ENST00000256646	NM_024408.3	1304	Ttc/Ctc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251769	212251769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	45	252	0	ENST00000342788.4:c.3290C>T	p.Ala1097Val	p.A1097V	ENST00000342788	NM_005235.2	1097	gCt/gTt																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12626123	12626123	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	138	258	0	ENST00000251849.4:c.1837C>G	p.Leu613Val	p.L613V	ENST00000251849	NM_002880.3	613	Cta/Gta																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12632338	12632338	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	145	375	0	ENST00000251849.4:c.1329C>G	p.Phe443Leu	p.F443L	ENST00000251849	NM_002880.3	443	ttC/ttG																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47098670	47098670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	203	405	0	ENST00000409792.3:c.6604C>A	p.Pro2202Thr	p.P2202T	ENST00000409792	NM_014159.6	2202	Cct/Act																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52668771	52668771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	87	314	0	ENST00000394830.3:c.1148C>T	p.Ser383Leu	p.S383L	ENST00000394830	NM_018313.4	383	tCa/tTa																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	69988316	69988316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	136	205	0	ENST00000352241.4:c.650G>A	p.Arg217Gln	p.R217Q	ENST00000352241	NM_198159.2	217	cGa/cAa																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	31	214	0	ENST00000318789.4:c.1531-1G>C		p.X511_splice	ENST00000318789	NM_032682.5	511																																													NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142168330	142168330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	30	243	0	ENST00000350721.4:c.7876G>A	p.Glu2626Lys	p.E2626K	ENST00000350721	NM_001184.3	2626	Gaa/Aaa																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612113	189612113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	150	330	0	ENST00000264731.3:c.1865G>T	p.Ser622Ile	p.S622I	ENST00000264731	NM_003722.4	622	aGt/aTt																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153253817	153253817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	32	254	0	ENST00000281708.4:c.916C>A	p.Gln306Lys	p.Q306K	ENST00000281708	NM_033632.3	306	Cag/Aag																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187541712	187541712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	147	345	0	ENST00000441802.2:c.6028G>A	p.Glu2010Lys	p.E2010K	ENST00000441802	NM_005245.3	2010	Gag/Aag																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149450135	149450135	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	145	385	0	ENST00000286301.3:c.1083-1G>A		p.X361_splice	ENST00000286301	NM_005211.3	361																																													NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149497266	149497266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	157	428	0	ENST00000261799.4:c.3052G>T	p.Asp1018Tyr	p.D1018Y	ENST00000261799	NM_002609.3	1018	Gac/Tac																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176522416	176522416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	136	311	0	ENST00000292408.4:c.1605C>A	p.Asn535Lys	p.N535K	ENST00000292408	NM_213647.1	535	aaC/aaA																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26032031	26032031	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1240	116	657	0	ENST00000244661.2:c.258G>C	p.Gln86His	p.Q86H	ENST00000244661	NM_003537.3	86	caG/caC																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056021	26056021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	47	155	0	ENST00000343677.2:c.636G>C	p.Lys212Asn	p.K212N	ENST00000343677	NM_005319.3	212	aaG/aaC																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32185020	32185020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	56	363	0	ENST00000375023.3:c.1648G>A	p.Glu550Lys	p.E550K	ENST00000375023	NM_004557.3	550	Gag/Aag																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150004877	150004877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	136	318	0	ENST00000253339.5:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000253339		450	Gaa/Aaa																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90947841	90947841	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	27	218	0	ENST00000265433.3:c.2235-1G>A		p.X745_splice	ENST00000265433	NM_002485.4	745																																													NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145739635	145739635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	91	421	0	ENST00000428558.2:c.1816G>A	p.Glu606Lys	p.E606K	ENST00000428558	NM_004260.3	606	Gag/Aag																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28891647	28891647	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	191	446	0	ENST00000282397.4:c.3374C>G	p.Ser1125Cys	p.S1125C	ENST00000282397	NM_002019.4	1125	tCt/tGt																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41256945	41256945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	41	266	0	ENST00000357654.3:c.241C>G	p.Gln81Glu	p.Q81E	ENST00000357654	NM_007294.3	81	Caa/Gaa																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	134	312	0	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7117320	7117320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	60	407	0	ENST00000302850.5:c.3896C>T	p.Pro1299Leu	p.P1299L	ENST00000302850	NM_000208.2	1299	cCa/cTa																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45872221	45872221	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	82	345	0	ENST00000391945.4:c.213C>G	p.Ile71Met	p.I71M	ENST00000391945	NM_000400.3	71	atC/atG																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31016191	31016191	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	70	335	0	ENST00000375687.4:c.437C>A	p.Ser146Tyr	p.S146Y	ENST00000375687	NM_015338.5	146	tCc/tAc																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39750725	39750725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	106	163	0	ENST00000361337.2:c.2125G>C	p.Glu709Gln	p.E709Q	ENST00000361337	NM_003286.2	709	Gag/Cag																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39772526	39772526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	44	307	0	ENST00000288319.7:c.715G>A	p.Glu239Lys	p.E239K	ENST00000288319	NM_182918.3	239	Gaa/Aaa																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39922160	39922160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	70	564	0	ENST00000378444.4:c.4012G>C	p.Glu1338Gln	p.E1338Q	ENST00000378444	NM_001123385.1	1338	Gaa/Caa																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045016	47045016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	169	441	0	ENST00000329236.7:c.2108C>T	p.Ser703Leu	p.S703L	ENST00000329236	NM_001204466.1	703	tCa/tTa																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48650729	48650729	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	242	466	0	ENST00000376670.3:c.599-1G>C		p.X200_splice	ENST00000376670	NM_002049.3	200																																													NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53239915	53239915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	98	420	0	ENST00000375401.3:c.1526C>T	p.Ser509Leu	p.S509L	ENST00000375401	NM_004187.3	509	tCa/tTa																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70352372	70352372	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	190	479	1	ENST00000374080.3:c.4399C>T	p.Arg1467Ter	p.R1467*	ENST00000374080		1467	Cga/Tga																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225368488	225368489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	101	227	0	ENST00000264414.4:c.1257dup	p.Arg420Ter	p.R420*	ENST00000264414	NM_003590.4	419	-/T																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68862100	68862100	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	218	356	0	ENST00000261769.5:c.2190del	p.Leu731PhefsTer39	p.L731Ffs*39	ENST00000261769	NM_004360.3	730	Ttt/tt																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	29	181	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652129	36652136	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCCGG	GAGGCCGG	-			P-0006628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	93	333	0	ENST00000244741.5:c.253_260delGGCCGGGA	p.Gly85Ter	p.G85*	ENST00000244741	NM_000389.4	84	cGAGGCCGG/c																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0006628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	342	404	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189608664	189608664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1464459460		P-0006628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	103	349	1	ENST00000264731.3:c.1739C>T	p.Ser580Phe	p.S580F	ENST00000264731	NM_003722.4	580	tCc/tTc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41564578	41564578	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	109	450	0	ENST00000263253.7:c.4000G>T	p.Glu1334Ter	p.E1334*	ENST00000263253	NM_001429.3	1334	Gaa/Taa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	125	359	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117868412	117868412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	116	422	0	ENST00000297338.2:c.930T>G	p.Asp310Glu	p.D310E	ENST00000297338	NM_006265.2	310	gaT/gaG																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70356400	70356401	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	88	527	1	ENST00000374080.3:c.5301dup	p.Lys1768GlnfsTer3	p.K1768Qfs*3	ENST00000374080		1765	-/C																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971124	21971124	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	82	304	0	ENST00000304494.5:c.234del	p.Thr79ProfsTer67	p.T79Pfs*67	ENST00000304494	NM_000077.4	78	ctC/ct																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971124	21971124	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	82	304	0	ENST00000304494.5:c.234del	p.Thr79ProfsTer67	p.T79Pfs*67	ENST00000304494	NM_000077.4	78	ctC/ct																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971124	21971124	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	82	304	0	ENST00000304494.5:c.234del	p.Thr79ProfsTer67	p.T79Pfs*67	ENST00000304494	NM_000077.4	78	ctC/ct																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579537	7579537	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	97	492	0	ENST00000269305.4:c.150del	p.Ile50MetfsTer73	p.I50Mfs*73	ENST00000269305	NM_001126112.2	50	atT/at																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0006743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	124	463	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	147	409	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11145615	11145615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	80	371	0	ENST00000344626.4:c.3977A>G	p.Glu1326Gly	p.E1326G	ENST00000344626	NM_003072.3	1326	gAg/gGg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53224178	53224179	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	89	550	0	ENST00000375401.3:c.3372_3373insA	p.Leu1125IlefsTer5	p.L1125Ifs*5	ENST00000375401	NM_004187.3	1124	-/A																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120149	70120149	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	92	180	0	ENST00000245479.2:c.1151del	p.Thr384SerfsTer2	p.T384Sfs*2	ENST00000245479	NM_000346.3	384	aCg/ag																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76874405	76874407	+	frameshift_variant	Frame_Shift_Del	DEL	TGG	TGG	AT			P-0006743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	69	616	0	ENST00000373344.5:c.5315_5317delinsAT	p.Ser1772TyrfsTer10	p.S1772Yfs*10	ENST00000373344	NM_000489.3	1772	tCCAtt/tATtt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	274	652	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	254	887	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29462643	29462643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1337	237	1089	2	ENST00000389048.3:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000389048	NM_004304.4	753	cGg/cAg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38947467	38947467	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1397	82	844	1	ENST00000357387.3:c.4213C>T	p.Arg1405Ter	p.R1405*	ENST00000357387	NM_152756.3	1405	Cga/Tga																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155874272	155874272	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	86	644	0	ENST00000368323.3:c.259G>C	p.Asp87His	p.D87H	ENST00000368323	NM_006912.5	87	Gac/Cac																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988403	36988403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	68	276	0	ENST00000354822.5:c.250C>G	p.Gln84Glu	p.Q84E	ENST00000354822	NM_001079668.2	84	Cag/Gag																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593416	48593417	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAT			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	141	673	0	ENST00000342988.3:c.1169_1172dup	p.Cys391Ter	p.C391*	ENST00000342988	NM_005359.5	389	-/GAAT																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974775	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	151	381	0	ENST00000304494.5:c.52del	p.Thr18ArgfsTer8	p.T18Rfs*8	ENST00000304494	NM_000077.4	18	Acg/cg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974775	21974775	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	151	381	0	ENST00000304494.5:c.52del	p.Thr18ArgfsTer8	p.T18Rfs*8	ENST00000304494	NM_000077.4	18	Acg/cg																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988381	36988402	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTGCCCCACGGCGTGCTGCT	TGGTGCCCCACGGCGTGCTGCT	-			P-0012821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	67	220	0	ENST00000354822.5:c.251_272del	p.Gln84ProfsTer10	p.Q84Pfs*10	ENST00000354822	NM_001079668.2	84	cAGCAGCACGCCGTGGGGCACCAc/cc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	96	312	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	189	265	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	142	229	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																												NEWRECORD																																		
SRSF2	0	MSKCC	GRCh37	17	74733058	74733058	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	175	351	2	ENST00000359995.5:c.185T>G	p.Phe62Cys	p.F62C	ENST00000359995	NM_001195427.1	62	tTt/tGt																																												NEWRECORD																																		
SRC	0	MSKCC	GRCh37	20	36012692	36012692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	166	34	0	ENST00000358208.4:c.136G>A	p.Gly46Ser	p.G46S	ENST00000358208		46	Ggc/Agc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	81	520	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	93	609	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593473	48593474	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	82	535	1	ENST00000342988.3:c.1225dup	p.Val409GlyfsTer20	p.V409Gfs*20	ENST00000342988	NM_005359.5	408	-/G																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	75	293	1	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527820	157527820	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	60	312	0	ENST00000346085.5:c.5545C>A	p.Pro1849Thr	p.P1849T	ENST00000346085	NM_020732.3	1849	Ccc/Acc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593662	55593663	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCTTATGATCATTTG			P-0010109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	142	490	0	ENST00000288135.5:c.1739_1740insTTTGCCTTATGATCA	p.Leu576_His580dup	p.L576_H580dup	ENST00000288135	NM_000222.2	576	-/CCTTATGATCATTTG																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	145	295	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	19	214	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	426	564	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	50	397	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	38	350	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	68	446	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	94	431	0	ENST00000269305.4:c.706T>A	p.Tyr236Asn	p.Y236N	ENST00000269305	NM_001126112.2	236	Tac/Aac																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936076	178936076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	57	172	1	ENST00000263967.3:c.1618C>T	p.Leu540Phe	p.L540F	ENST00000263967	NM_006218.2	540	Ctc/Ttc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509735	106509735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	178	392	0	ENST00000359195.3:c.1729C>A	p.His577Asn	p.H577N	ENST00000359195	NM_002649.2	577	Cat/Aat																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643942	52643943	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	86	242	0	ENST00000394830.3:c.1953dup	p.Ser652IlefsTer13	p.S652Ifs*13	ENST00000394830	NM_018313.4	651	-/A																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			584	165	588	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	160	741	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30729932	30729932	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	92	386	0	ENST00000359013.4:c.1528G>T	p.Glu510Ter	p.E510*	ENST00000359013	NM_001024847.2	510	Gaa/Taa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057809	27057810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	161	807	1	ENST00000324856.7:c.1518dup	p.Gln507SerfsTer116	p.Q507Sfs*116	ENST00000324856	NM_006015.4	506	tct/tcTt																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			345	99	322	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																												NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35874637	35874637	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			834	181	525	3	ENST00000303115.3:c.799del	p.Arg267GlyfsTer28	p.R267Gfs*28	ENST00000303115	NM_002185.3	265	Aaa/aa																																												NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			584	206	547	7	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			597	114	352	0	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56878430	56878430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			965	252	724	2	ENST00000308159.5:c.2369G>A	p.Arg790His	p.R790H	ENST00000308159	NM_014669.4	790	cGc/cAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175650	112175651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			619	194	575	0	ENST00000257430.4:c.4364dup	p.Asn1455LysfsTer2	p.N1455Kfs*2	ENST00000257430	NM_000038.5	1453	-/A																																												NEWRECORD																																		
MCL1	0	MSKCC	GRCh37	1	150551951	150551952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			804	193	478	3	ENST00000369026.2:c.55dup	p.Ala19GlyfsTer91	p.A19Gfs*91	ENST00000369026	NM_021960.4	19	gcc/gGcc																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65304197	65304197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			620	194	581	0	ENST00000342505.4:c.2918A>G	p.Asn973Ser	p.N973S	ENST00000342505	NM_002227.2	973	aAc/aGc																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106197150	106197150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			632	154	411	1	ENST00000380013.4:c.5483A>G	p.Gln1828Arg	p.Q1828R	ENST00000380013	NM_001127208.2	1828	cAg/cGg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108117725	108117725	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			631	155	397	0	ENST00000278616.4:c.936A>T	p.Leu312Phe	p.L312F	ENST00000278616	NM_000051.3	312	ttA/ttT																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49446729	49446729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			657	169	402	0	ENST00000301067.7:c.1081G>A	p.Val361Ile	p.V361I	ENST00000301067	NM_003482.3	361	Gtt/Att																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40489570	40489570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	266	742	0	ENST00000264657.5:c.680C>T	p.Ala227Val	p.A227V	ENST00000264657	NM_139276.2	227	gCg/gTg																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10265386	10265386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			769	179	457	0	ENST00000340748.4:c.1660G>A	p.Ala554Thr	p.A554T	ENST00000340748		554	Gcg/Acg																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24143232	24143232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			878	231	581	1	ENST00000263121.7:c.464G>A	p.Arg155His	p.R155H	ENST00000263121	NM_003073.3	155	cGc/cAc																																												NEWRECORD																																		
TCF3	6929	MSKCC	GRCh37	19	1622192	1622193	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			822	197	595	0	ENST00000344749.5:c.682_683del	p.Trp228GlufsTer25	p.W228Efs*25	ENST00000344749	NM_001136139.2	228	TGg/g																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806204	1806204	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007143-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			852	192	559	0	ENST00000260795.2:c.1227del	p.Thr410ProfsTer22	p.T410Pfs*22	ENST00000260795		408	tCc/tc																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	69	982	7	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	22	629	1	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31022403	31022425	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACTGCCATAGAGAGGCGGC	CACCACTGCCATAGAGAGGCGGC	-			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	12	321	0	ENST00000375687.4:c.1900_1922delAGAGAGGCGGCCACCACTGCCAT	p.Glu635ArgfsTer15	p.E635Rfs*15	ENST00000375687	NM_015338.5	630	CACCACTGCCATAGAGAGGCGGCc/c																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16263998	16263998	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145947516		P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	33	821	0	ENST00000375759.3:c.10367C>T	p.Pro3456Leu	p.P3456L	ENST00000375759	NM_015001.2	3456	cCg/cTg																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48028085	48028085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	26	633	3	ENST00000234420.5:c.2963G>A	p.Arg988His	p.R988H	ENST00000234420	NM_000179.2	988	cGc/cAc																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185184613	185184613	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	37	849	0	ENST00000265026.3:c.1506-1G>T		p.X502_splice	ENST00000265026	NM_004721.4	502																																													NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55961056	55961056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	23	610	0	ENST00000263923.4:c.2884C>T	p.Arg962Cys	p.R962C	ENST00000263923	NM_002253.2	962	Cgc/Tgc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187527289	187527289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	25	419	0	ENST00000441802.2:c.10285G>A	p.Asp3429Asn	p.D3429N	ENST00000441802	NM_005245.3	3429	Gat/Aat																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630815	187630815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	35	705	1	ENST00000441802.2:c.167C>T	p.Pro56Leu	p.P56L	ENST00000441802	NM_005245.3	56	cCt/cTt																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2968290	2968290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	19	723	0	ENST00000396946.4:c.1696G>A	p.Glu566Lys	p.E566K	ENST00000396946	NM_032415.4	566	Gag/Aag																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13935664	13935664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	42	483	0	ENST00000405192.2:c.1192C>A	p.Leu398Ile	p.L398I	ENST00000405192	NM_001163147.1	398	Ctt/Att																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117878884	117878884	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	51	994	0	ENST00000297338.2:c.85A>G	p.Lys29Glu	p.K29E	ENST00000297338	NM_006265.2	29	Aaa/Gaa																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5126778	5126778	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	33	514	0	ENST00000381652.3:c.3386A>G	p.Asn1129Ser	p.N1129S	ENST00000381652	NM_004972.3	1129	aAc/aGc																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133729624	133729624	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	22	485	0	ENST00000318560.5:c.253G>T	p.Gly85Cys	p.G85C	ENST00000318560	NM_005157.4	85	Ggt/Tgt																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852155	63852155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	22	433	0	ENST00000279873.7:c.2933C>A	p.Pro978His	p.P978H	ENST00000279873	NM_032199.2	978	cCt/cAt																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70450757	70450757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	25	478	0	ENST00000373644.4:c.5597C>T	p.Ala1866Val	p.A1866V	ENST00000373644	NM_030625.2	1866	gCa/gTa																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133252002	133252002	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	22	658	0	ENST00000320574.5:c.1208T>C	p.Ile403Thr	p.I403T	ENST00000320574	NM_006231.2	403	aTc/aCc																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41133772	41133772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	31	1119	1	ENST00000379561.5:c.1856G>A	p.Arg619Gln	p.R619Q	ENST00000379561	NM_002015.3	619	cGg/cAg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41988838	41988838	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	33	1241	1	ENST00000219905.7:c.1630C>A	p.Pro544Thr	p.P544T	ENST00000219905	NM_001164273.1	544	Ccc/Acc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89346252	89346252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	23	619	1	ENST00000301030.4:c.6698G>T	p.Gly2233Val	p.G2233V	ENST00000301030	NM_001256183.1	2233	gGg/gTg																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1612253	1612253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	16	802	0	ENST00000344749.5:c.1766T>C	p.Leu589Pro	p.L589P	ENST00000344749	NM_001136139.2	589	cTg/cCg																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061226	38061237	+	inframe_deletion	In_Frame_Del	DEL	CGAACATGTTGC	CGAACATGTTGC	-			P-0008387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	74	468	1	ENST00000250448.2:c.752_763delGCAACATGTTCG	p.Gly251_Phe254del	p.G251_F254del	ENST00000250448	NM_004496.3	251	gGCAACATGTTCGag/gag																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	99	526	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	78	487	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	95	614	0	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061169	38061169	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	19	230	0	ENST00000250448.2:c.820del	p.Ala274ProfsTer47	p.A274Pfs*47	ENST00000250448	NM_004496.3	274	Gcc/cc																																												NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128752960	128752960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	74	555	0	ENST00000377970.2:c.1121A>G	p.His374Arg	p.H374R	ENST00000377970	NM_002467.4	374	cAc/cGc																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155874163	155874163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1328	85	703	0	ENST00000368323.3:c.368G>A	p.Arg123His	p.R123H	ENST00000368323	NM_006912.5	123	cGt/cAt																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153245399	153245399	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	90	603	0	ENST00000281708.4:c.1792A>C	p.Asn598His	p.N598H	ENST00000281708	NM_033632.3	598	Aat/Cat																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145742547	145742547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	62	377	0	ENST00000428558.2:c.241del	p.His81IlefsTer2	p.H81Ifs*2	ENST00000428558	NM_004260.3	81	Cat/at																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44732910	44732910	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	79	460	0	ENST00000377967.4:c.117del	p.Ser40AlafsTer2	p.S40Afs*2	ENST00000377967	NM_021140.2	38	tCc/tc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099286	157099287	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1234	153	725	0	ENST00000346085.5:c.228dup	p.Ala77ArgfsTer155	p.A77Rfs*155	ENST00000346085	NM_020732.3	75	gcc/gCcc																																												NEWRECORD																																		
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	141	661	1	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434889	49434889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	96	490	1	ENST00000301067.7:c.6664C>T	p.Gln2222Ter	p.Q2222*	ENST00000301067	NM_003482.3	2222	Cag/Tag																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	85	495	1	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31395665	31395665	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	98	594	0	ENST00000328111.2:c.2518C>T	p.Arg840Ter	p.R840*	ENST00000328111	NM_006892.3	840	Cga/Tga																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	213403254	213403254	+	frameshift_variant,start_lost	Frame_Shift_Del	DEL	T	T	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	47	643	0	ENST00000342788.4:c.1delA	p.Met1?	p.M1?	ENST00000342788	NM_005235.2	1	Atg/tg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16199481	16199481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	115	578	0	ENST00000375759.3:c.254C>T	p.Pro85Leu	p.P85L	ENST00000375759	NM_015001.2	85	cCg/cTg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16260200	16260200	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	48	246	0	ENST00000375759.3:c.7465A>G	p.Ile2489Val	p.I2489V	ENST00000375759	NM_015001.2	2489	Atc/Gtc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29445447	29445447	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	106	700	0	ENST00000389048.3:c.3386A>C	p.Glu1129Ala	p.E1129A	ENST00000389048	NM_004304.4	1129	gAg/gCg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29940456	29940456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	66	478	0	ENST00000389048.3:c.775C>T	p.Arg259Cys	p.R259C	ENST00000389048	NM_004304.4	259	Cgc/Tgc																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99172158	99172158	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	120	692	0	ENST00000074304.5:c.1724A>G	p.Asn575Ser	p.N575S	ENST00000074304	NM_001134224.1	575	aAc/aGc																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99182499	99182499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	91	585	0	ENST00000074304.5:c.2302T>C	p.Phe768Leu	p.F768L	ENST00000074304	NM_001134224.1	768	Ttt/Ctt																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56183253	56183253	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	63	400	0	ENST00000399503.3:c.4163A>C	p.Asp1388Ala	p.D1388A	ENST00000399503	NM_005921.1	1388	gAt/gCt																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29911164	29911164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	44	270	0	ENST00000376809.5:c.463C>T	p.Arg155Cys	p.R155C	ENST00000376809	NM_002116.7	155	Cgc/Tgc																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138196045	138196045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	87	455	0	ENST00000237289.4:c.359T>C	p.Leu120Ser	p.L120S	ENST00000237289	NM_001270507.1	120	tTg/tCg																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145739328	145739328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	98	481	0	ENST00000428558.2:c.2042A>G	p.Asp681Gly	p.D681G	ENST00000428558	NM_004260.3	681	gAc/gGc																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101904987	101904987	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	54	330	0	ENST00000374994.4:c.973+2T>C		p.X325_splice	ENST00000374994	NM_004612.2	325																																													NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100998747	100998747	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11571148		P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	177	862	2	ENST00000325455.5:c.1055C>T	p.Pro352Leu	p.P352L	ENST00000325455	NM_001202474.3	352	cCg/cTg																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73345041	73345041	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	48	385	0	ENST00000377767.4:c.1755+1G>C		p.X585_splice	ENST00000377767	NM_014953.3	585																																													NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95566229	95566229	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	108	588	0	ENST00000343455.3:c.4094T>C	p.Leu1365Pro	p.L1365P	ENST00000343455	NM_177438.2	1365	cTa/cCa																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3820570	3820570	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	53	305	0	ENST00000262367.5:c.2880+1G>A		p.X960_splice	ENST00000262367	NM_004380.2	960																																													NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3824601	3824601	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	108	726	0	ENST00000262367.5:c.2252T>C	p.Val751Ala	p.V751A	ENST00000262367	NM_004380.2	751	gTc/gCc																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67645064	67645064	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	117	703	0	ENST00000264010.4:c.329T>C	p.Ile110Thr	p.I110T	ENST00000264010	NM_006565.3	110	aTa/aCa																																												NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8108698	8108698	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	104	621	0	ENST00000585124.1:c.697A>G	p.Met233Val	p.M233V	ENST00000585124	NM_004217.3	233	Atg/Gtg																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56440675	56440675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	178	874	0	ENST00000407977.2:c.543G>T	p.Lys181Asn	p.K181N	ENST00000407977		181	aaG/aaT																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10252837	10252837	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	164	410	0	ENST00000340748.4:c.3128A>G	p.Tyr1043Cys	p.Y1043C	ENST00000340748		1043	tAc/tGc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41564603	41564603	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	97	611	0	ENST00000263253.7:c.4025G>T	p.Arg1342Met	p.R1342M	ENST00000263253	NM_001429.3	1342	aGg/aTg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70360612	70360617	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	43	615	1	ENST00000374080.3:c.6183_6188del	p.Gln2075_Gln2076del	p.Q2075_Q2076del	ENST00000374080		2058	CAGCAA/-																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89349355	89349356	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2157	248	1382	0	ENST00000301030.4:c.3594dupA	p.Glu1199ArgfsTer5	p.E1199Rfs*5	ENST00000301030	NM_001256183.1	1198	-/A																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3900661	3900661	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	79	418	2	ENST00000262367.5:c.435delC	p.Ala146LeufsTer6	p.A146Lfs*6	ENST00000262367	NM_004380.2	145	ccC/cc																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31019143	31019144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	105	820	0	ENST00000375687.4:c.742dup	p.Glu248GlyfsTer6	p.E248Gfs*6	ENST00000375687	NM_015338.5	246	-/G																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49432686	49432687	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	71	569	0	ENST00000301067.7:c.8452_8453del	p.Trp2818AlafsTer26	p.W2818Afs*26	ENST00000301067	NM_003482.3	2818	TGg/g																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98224248	98224248	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	71	490	0	ENST00000331920.6:c.2593del	p.Thr865ProfsTer38	p.T865Pfs*38	ENST00000331920	NM_000264.3	865	Acc/cc																																												NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933594	39933594	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	72	607	1	ENST00000378444.4:c.1005del	p.Ser336ArgfsTer42	p.S336Rfs*42	ENST00000378444	NM_001123385.1	335	ccC/cc																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533517	63533517	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	89	643	0	ENST00000307078.5:c.1637del	p.Gly546AlafsTer143	p.G546Afs*143	ENST00000307078	NM_004655.3	546	gGc/gc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002390-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			829	549	305	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																												NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0003915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	30	42	0	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1189	259	607	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47163551	47163551	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	105	362	0	ENST00000409792.3:c.2575A>G	p.Thr859Ala	p.T859A	ENST00000409792	NM_014159.6	859	Act/Gct																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55956212	55956212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1161	64	504	0	ENST00000263923.4:c.3103C>A	p.Leu1035Ile	p.L1035I	ENST00000263923	NM_002253.2	1035	Ctc/Atc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68845731	68845731	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	146	176	0	ENST00000261769.5:c.977T>A	p.Ile326Asn	p.I326N	ENST00000261769	NM_004360.3	326	aTc/aAc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624263	89624282	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAGGAGATATCAAGAGGA	AAAAGGAGATATCAAGAGGA	-			P-0003915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	52	138	0	ENST00000371953.3:c.37_56delAAAAGGAGATATCAAGAGGA	p.Lys13TrpfsTer24	p.K13Wfs*24	ENST00000371953	NM_000314.4	13	AAAAGGAGATATCAAGAGGAt/t																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	77	208	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133738275	133738276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	86	278	0	ENST00000318560.5:c.676dup	p.Tyr226LeufsTer72	p.Y226Lfs*72	ENST00000318560	NM_005157.4	225	-/T																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099884	27099884	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	78	239	0	ENST00000324856.7:c.3765del	p.Met1256TrpfsTer13	p.M1256Wfs*13	ENST00000324856	NM_006015.4	1255	Ggg/gg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0009829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	15	384	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0009829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	70	458	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151845697	151845697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	50	367	0	ENST00000262189.6:c.13315G>T	p.Val4439Phe	p.V4439F	ENST00000262189	NM_170606.2	4439	Gtc/Ttc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55136887	55136888	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCT			P-0009829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	17	530	0	ENST00000257290.5:c.1211_1214dup	p.Tyr405Ter	p.Y405*	ENST00000257290	NM_006206.4	403	-/AGCT																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183793	10183793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	133	329	0	ENST00000256474.2:c.262T>C	p.Trp88Arg	p.W88R	ENST00000256474	NM_000551.3	88	Tgg/Cgg																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12022628	12022628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	66	413	0	ENST00000396373.4:c.734G>A	p.Cys245Tyr	p.C245Y	ENST00000396373	NM_001987.4	245	tGc/tAc																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26828803	26828803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	58	380	1	ENST00000381527.3:c.25C>A	p.Leu9Met	p.L9M	ENST00000381527	NM_001260.1	9	Ctg/Atg																																												NEWRECORD																																		
CD79B	0	MSKCC	GRCh37	17	62006603	62006603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	143	428	0	ENST00000392795.3:c.676C>T	p.His226Tyr	p.H226Y	ENST00000392795	NM_001039933.1	226	Cac/Tac																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52677329	52677330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	152	462	1	ENST00000394830.3:c.929dup	p.Thr311AspfsTer7	p.T311Dfs*7	ENST00000394830	NM_018313.4	310	ctg/ctTg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934916	9934916	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	125	464	0	ENST00000330684.3:c.1374del	p.Phe459SerfsTer6	p.F459Sfs*6	ENST00000330684	NM_001134407.1	458	ggG/gg																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37067142	37067142	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	74	228	0	ENST00000231790.2:c.1053del	p.Ala353LeufsTer14	p.A353Lfs*14	ENST00000231790	NM_000249.3	351	ggA/gg																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20480130	20480130	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	62	558	0	ENST00000346618.3:c.449del	p.Leu150Ter	p.L150*	ENST00000346618	NM_001949.4	149	ggT/gg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	248	538	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15272024	15272024	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	149	220	0	ENST00000263388.2:c.6415C>T	p.Gln2139Ter	p.Q2139*	ENST00000263388	NM_000435.2	2139	Cag/Tag																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056572	26056573	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	40	150	0	ENST00000343677.2:c.84dup	p.Gly29TrpfsTer6	p.G29Wfs*6	ENST00000343677	NM_005319.3	28	-/T																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			536	231	674	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115974	8115975	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCAT			P-0002950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	90	349	0	ENST00000346208.3:c.1322_1326dup	p.Gly443ProfsTer34	p.G443Pfs*34	ENST00000346208		440	-/GCCAT																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1293	350	945	2	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	219	528	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	125	442	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	162	576	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	330	678	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	155	628	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																												NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	212	482	5	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	140	480	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																												NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	175	984	2	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	149	450	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg																																												NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	14	296	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457264	67457264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	106	620	1	ENST00000327367.4:c.238C>T	p.Arg80Trp	p.R80W	ENST00000327367	NM_005902.3	80	Cgg/Tgg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	255	1136	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	38	328	4	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830903	72830904	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	317	1108	3	ENST00000268489.5:c.5677_5678delAG	p.Arg1893GlyfsTer35	p.R1893Gfs*35	ENST00000268489	NM_006885.3	1893	AGg/g																																												NEWRECORD																																		
TRAF2	0	MSKCC	GRCh37	9	139794917	139794917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	279	915	2	ENST00000247668.2:c.311C>T	p.Pro104Leu	p.P104L	ENST00000247668	NM_021138.3	104	cCg/cTg																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	248	931	3	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123298226	123298226	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	121	450	2	ENST00000358487.5:c.628C>T	p.Arg210Ter	p.R210*	ENST00000358487	NM_000141.4	210	Cga/Tga																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11190714	11190714	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199646470		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	42	650	0	ENST00000361445.4:c.5485A>G	p.Thr1829Ala	p.T1829A	ENST00000361445	NM_004958.3	1829	Acc/Gcc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15298120	15298120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	164	694	1	ENST00000263388.2:c.1636G>A	p.Val546Met	p.V546M	ENST00000263388	NM_000435.2	546	Gtg/Atg																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89836985	89836985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	85	596	2	ENST00000389301.3:c.2209G>A	p.Ala737Thr	p.A737T	ENST00000389301	NM_000135.2	737	Gct/Act																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1619428	1619428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	68	774	0	ENST00000344749.5:c.1213C>T	p.Arg405Cys	p.R405C	ENST00000344749	NM_001136139.2	405	Cgc/Tgc																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78858817	78858817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	107	595	0	ENST00000306801.3:c.1852G>A	p.Ala618Thr	p.A618T	ENST00000306801	NM_020761.2	618	Gca/Aca																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193107231	193107231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	189	477	0	ENST00000367435.3:c.440G>A	p.Arg147His	p.R147H	ENST00000367435	NM_024529.4	147	cGc/cAc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101624	27101624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	164	601	4	ENST00000324856.7:c.4906C>T	p.Arg1636Trp	p.R1636W	ENST00000324856	NM_006015.4	1636	Cgg/Tgg																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46511647	46511647	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	213	638	0	ENST00000262741.5:c.1130A>G	p.Asp377Gly	p.D377G	ENST00000262741	NM_003629.3	377	gAt/gGt																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46739871	46739871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	118	672	0	ENST00000371975.4:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000371975	NM_003579.3	558	Cgc/Tgc																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47630442	47630442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	198	592	1	ENST00000233146.2:c.112G>A	p.Asp38Asn	p.D38N	ENST00000233146	NM_000251.2	38	Gac/Aac																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47672702	47672702	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	230	656	0	ENST00000233146.2:c.1292T>A	p.Leu431Ter	p.L431*	ENST00000233146	NM_000251.2	431	tTa/tAa																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99179952	99179952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	219	800	0	ENST00000074304.5:c.1895C>T	p.Pro632Leu	p.P632L	ENST00000074304	NM_001134224.1	632	cCg/cTg																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662916	227662916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	244	802	0	ENST00000305123.5:c.539T>C	p.Ile180Thr	p.I180T	ENST00000305123	NM_005544.2	180	aTt/aCt																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138431133	138431133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	209	513	0	ENST00000289153.2:c.1316C>T	p.Ala439Val	p.A439V	ENST00000289153	NM_006219.2	439	gCg/gTg																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55124955	55124955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	249	906	1	ENST00000257290.5:c.20C>T	p.Ala7Val	p.A7V	ENST00000257290	NM_006206.4	7	gCg/gTg																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	224547	224547	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	61	478	0	ENST00000264932.6:c.223C>T	p.Arg75Ter	p.R75*	ENST00000264932	NM_004168.2	75	Cga/Tga																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38955712	38955712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	217	638	1	ENST00000357387.3:c.2594G>A	p.Arg865His	p.R865H	ENST00000357387	NM_152756.3	865	cGt/cAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112179179	112179179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199688874		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	155	494	0	ENST00000257430.4:c.7888G>A	p.Val2630Ile	p.V2630I	ENST00000257430	NM_000038.5	2630	Gtt/Att																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176722090	176722090	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150977055		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	145	424	1	ENST00000439151.2:c.7721C>T	p.Pro2574Leu	p.P2574L	ENST00000439151	NM_022455.4	2574	cCg/cTg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527698	157527698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	207	574	0	ENST00000346085.5:c.5423G>A	p.Arg1808His	p.R1808H	ENST00000346085	NM_020732.3	1808	cGt/cAt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8341820	8341820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	93	686	0	ENST00000356435.5:c.4820A>G	p.Asp1607Gly	p.D1607G	ENST00000356435		1607	gAt/gGt																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80412544	80412544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	223	574	1	ENST00000286548.4:c.497G>A	p.Arg166His	p.R166H	ENST00000286548	NM_002072.3	166	cGc/cAc																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97873912	97873912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	133	547	0	ENST00000289081.3:c.1162G>A	p.Gly388Arg	p.G388R	ENST00000289081	NM_000136.2	388	Gga/Aga																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133759526	133759526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	174	840	0	ENST00000318560.5:c.1849C>T	p.Arg617Cys	p.R617C	ENST00000318560	NM_005157.4	617	Cgc/Tgc																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133759706	133759706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	52	336	1	ENST00000318560.5:c.2029G>A	p.Gly677Arg	p.G677R	ENST00000318560	NM_005157.4	677	Ggg/Agg																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114917814	114917814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	217	787	1	ENST00000543371.1:c.1304C>T	p.Pro435Leu	p.P435L	ENST00000543371	NM_001198531.1	435	cCg/cTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431810	49431810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	79	430	1	ENST00000301067.7:c.9329G>A	p.Arg3110His	p.R3110H	ENST00000301067	NM_003482.3	3110	cGc/cAc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49030387	49030387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	171	499	0	ENST00000267163.4:c.1862G>A	p.Arg621His	p.R621H	ENST00000267163	NM_000321.2	621	cGt/cAt																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2131647	2131647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	188	816	2	ENST00000219476.3:c.3662C>T	p.Ser1221Leu	p.S1221L	ENST00000219476	NM_000548.3	1221	tCg/tTg																																												NEWRECORD																																		
PRKAR1A	0	MSKCC	GRCh37	17	66519008	66519008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	185	691	0	ENST00000358598.2:c.289C>T	p.Arg97Ter	p.R97*	ENST00000358598	NM_212471.2	97	Cga/Tga																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207168	1207168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	201	668	0	ENST00000326873.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000326873	NM_000455.4	86	Cga/Tga																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42794874	42794874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	24	433	2	ENST00000575354.2:c.1954G>A	p.Ala652Thr	p.A652T	ENST00000575354	NM_015125.3	652	Gcc/Acc																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50919695	50919695	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	187	867	1	ENST00000440232.2:c.2863C>T	p.Gln955Ter	p.Q955*	ENST00000440232	NM_002691.3	955	Cag/Tag																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41818358	41818358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			29	30	56	0	ENST00000373198.4:c.16G>A	p.Ala6Thr	p.A6T	ENST00000373198	NM_133170.3	6	Gcg/Acg																																												NEWRECORD																																		
ICOSLG	0	MSKCC	GRCh37	21	45655428	45655428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	110	440	1	ENST00000407780.3:c.424G>A	p.Val142Ile	p.V142I	ENST00000407780	NM_001283052.1	142	Gtc/Atc																																												NEWRECORD																																		
CRLF2	0	MSKCC	GRCh37	X	1321280	1321280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	89	378	1	ENST00000381566.1:c.475G>A	p.Glu159Lys	p.E159K	ENST00000381566		159	Gag/Aag																																												NEWRECORD																																		
AR	367	MSKCC	GRCh37	X	66942786	66942786	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs9332971		P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	234	951	3	ENST00000374690.3:c.2567G>A	p.Arg856His	p.R856H	ENST00000374690	NM_000044.3	856	cGc/cAc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057666	27057666	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	122	904	0	ENST00000324856.7:c.1377del	p.Ser460AlafsTer159	p.S460Afs*159	ENST00000324856	NM_006015.4	458	ggC/gg																																												NEWRECORD																																		
MAP2K2	0	MSKCC	GRCh37	19	4099311	4099312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	131	781	0	ENST00000262948.5:c.806dup	p.Pro270AlafsTer43	p.P270Afs*43	ENST00000262948	NM_030662.3	269	ccg/ccCg																																												NEWRECORD																																		
ICOSLG	0	MSKCC	GRCh37	21	45656840	45656840	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	53	502	0	ENST00000407780.3:c.316del	p.Gln106ArgfsTer11	p.Q106Rfs*11	ENST00000407780	NM_001283052.1	106	Cag/ag																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106157385	106157385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	112	446	0	ENST00000380013.4:c.2290del	p.Gln764LysfsTer49	p.Q764Kfs*49	ENST00000380013	NM_001127208.2	762	caC/ca																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37646922	37646922	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	229	798	2	ENST00000447079.4:c.2048del	p.Pro683GlnfsTer70	p.P683Qfs*70	ENST00000447079	NM_015083.1	682	Ccc/cc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56168478	56168479	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	181	320	0	ENST00000399503.3:c.1436_1437del	p.Cys479Ter	p.C479*	ENST00000399503	NM_005921.1	478	gaGTgt/gagt																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938088	76938089	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	158	639	0	ENST00000373344.5:c.2658_2659dup	p.Thr887ArgfsTer19	p.T887Rfs*19	ENST00000373344	NM_000489.3	887	act/aGAct																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135782131	135782131	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	467	708	0	ENST00000298552.3:c.1425del	p.Asp476IlefsTer56	p.D476Ifs*56	ENST00000298552	NM_001162426.1	475	aaA/aa																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1625696	1625696	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	226	890	0	ENST00000344749.5:c.378del	p.Ser127GlnfsTer17	p.S127Qfs*17	ENST00000344749	NM_001136139.2	126	ctG/ct																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	15	80	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	26	142	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	30	211	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261																																													NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25467058	25467058	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	51	232	0	ENST00000264709.3:c.1817A>G	p.Gln606Arg	p.Q606R	ENST00000264709	NM_175629.2	606	cAg/cGg																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80537224	80537224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	37	173	0	ENST00000286548.4:c.174G>C	p.Gln58His	p.Q58H	ENST00000286548	NM_002072.3	58	caG/caC																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380279	25380279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	51	299	2	ENST00000256078.4:c.179G>A	p.Gly60Asp	p.G60D	ENST00000256078	NM_033360.2	60	gGt/gAt																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59763282	59763282	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	67	353	0	ENST00000259008.2:c.2820G>C	p.Lys940Asn	p.K940N	ENST00000259008	NM_032043.2	940	aaG/aaC																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59763455	59763455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	32	218	0	ENST00000259008.2:c.2647G>A	p.Glu883Lys	p.E883K	ENST00000259008	NM_032043.2	883	Gaa/Aaa																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1621908	1621908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	58	374	0	ENST00000344749.5:c.884C>T	p.Ser295Leu	p.S295L	ENST00000344749	NM_001136139.2	295	tCa/tTa																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36421175	36421175	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	38	224	0	ENST00000300305.3:c.22G>C	p.Glu8Gln	p.E8Q	ENST00000300305		8	Gag/Cag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44937721	44937721	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	55	160	0	ENST00000377967.4:c.2909T>G	p.Ile970Arg	p.I970R	ENST00000377967	NM_021140.2	970	aTa/aGa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27088648	27088649	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	50	304	0	ENST00000324856.7:c.2258dup	p.Met753IlefsTer64	p.M753Ifs*64	ENST00000324856	NM_006015.4	753	atg/aTtg																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002487-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	167	368	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458424	120458424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002487-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	79	190	0	ENST00000256646.2:c.6921C>A	p.Phe2307Leu	p.F2307L	ENST00000256646	NM_024408.3	2307	ttC/ttA																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553426	106553426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002487-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	150	228	0	ENST00000369096.4:c.1391C>T	p.Thr464Ile	p.T464I	ENST00000369096	NM_001198.3	464	aCt/aTt																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10273940	10273940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002487-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	114	326	0	ENST00000330684.3:c.329C>T	p.Ala110Val	p.A110V	ENST00000330684	NM_001134407.1	110	gCc/gTc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578534	7578535	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002487-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	239	280	0	ENST00000269305.4:c.395dup	p.Met133AspfsTer16	p.M133Dfs*16	ENST00000269305	NM_001126112.2	132	aag/aaAg																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56448331	56448339	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTGATGA	TGCTGATGA	C			P-0002487-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			147	250	228	0	ENST00000407977.2:c.308_316delinsG	p.Phe103CysfsTer19	p.F103Cfs*19	ENST00000407977		103	tTCATCAGCAtc/tGtc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624262	89624263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	36	157	0	ENST00000371953.3:c.40dup	p.Arg14LysfsTer30	p.R14Kfs*30	ENST00000371953	NM_000314.4	12	-/A																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66729099	66729104	+	inframe_deletion	In_Frame_Del	DEL	ATCAAA	ATCAAA	-			P-0004554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	299	490	0	ENST00000307102.5:c.307_312delATCAAA	p.Ile103_Lys104del	p.I103_K104del	ENST00000307102	NM_002755.3	103	ATCAAA/-																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579315	7579316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	273	362	0	ENST00000269305.4:c.371dupG	p.Cys124TrpfsTer25	p.C124Wfs*25	ENST00000269305	NM_001126112.2	124	tgc/tgGc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	194	286	0	ENST00000257430.4:c.3944C>G	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tGa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212812239	212812239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	71	520	0	ENST00000342788.4:c.337G>A	p.Asp113Asn	p.D113N	ENST00000342788	NM_005235.2	113	Gat/Aat																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153268138	153268138	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	153	540	1	ENST00000281708.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000281708	NM_033632.3	224	Cga/Tga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108188194	108188194	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	80	465	0	ENST00000278616.4:c.6293T>G	p.Leu2098Arg	p.L2098R	ENST00000278616	NM_000051.3	2098	cTt/cGt																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45368319	45368319	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	144	486	0	ENST00000262160.6:c.1283G>A	p.Arg428Lys	p.R428K	ENST00000262160	NM_005901.5	428	aGg/aAg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717703	89717703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	85	161	1	ENST00000371953.3:c.728T>C	p.Phe243Ser	p.F243S	ENST00000371953	NM_000314.4	243	tTc/tCc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101566	27101567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	63	270	0	ENST00000324856.7:c.4850dup	p.Pro1618SerfsTer30	p.P1618Sfs*30	ENST00000324856	NM_006015.4	1616	-/G																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	77	269	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0005896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	801	734	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	160	418	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	130	193	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	351	700	0	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107180	27107180	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	121	252	0	ENST00000324856.7:c.6791C>G	p.Ser2264Ter	p.S2264*	ENST00000324856	NM_006015.4	2264	tCa/tGa																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	26	51	0	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100139	27100139	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	273	513	0	ENST00000324856.7:c.3936del	p.Asn1313ThrfsTer168	p.N1313Tfs*168	ENST00000324856	NM_006015.4	1312	tCc/tc																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29910371	29910372	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	311	704	0	ENST00000376809.5:c.46dupG	p.Ala16GlyfsTer83	p.A16Gfs*83	ENST00000376809	NM_002116.7	14	tcg/tcGg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	218	703	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131972891	131972891	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0005525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	127	497	0	ENST00000265335.6:c.3474A>T	p.Gln1158His	p.Q1158H	ENST00000265335		1158	caA/caT																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176518738	176518738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200232395		P-0005525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	45	583	0	ENST00000292408.4:c.656G>A	p.Arg219His	p.R219H	ENST00000292408	NM_213647.1	219	cGc/cAc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3779564	3779564	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	215	808	0	ENST00000262367.5:c.5484C>A	p.Tyr1828Ter	p.Y1828*	ENST00000262367	NM_004380.2	1828	taC/taA																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41765801	41765801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	13	268	0	ENST00000301178.4:c.2677G>T	p.Gly893Cys	p.G893C	ENST00000301178	NM_021913.4	893	Ggt/Tgt																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53239756	53239756	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	155	350	0	ENST00000375401.3:c.1586G>T	p.Gly529Val	p.G529V	ENST00000375401	NM_004187.3	529	gGt/gTt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29509552	29509590	+	inframe_deletion	In_Frame_Del	DEL	GTGGATGGTTTTGCTGAAAGCACCAAACGTAAAGCAGCA	GTGGATGGTTTTGCTGAAAGCACCAAACGTAAAGCAGCA	-			P-0005525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	67	579	0	ENST00000358273.4:c.759_797del	p.Asp254_Val266del	p.D254_V266del	ENST00000358273	NM_001042492.2	253	GTGGATGGTTTTGCTGAAAGCACCAAACGTAAAGCAGCA/-																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64572153	64572166	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCGGCGGGGGC	TGGGCGGCGGGGGC	-			P-0005525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	36	420	0	ENST00000337652.1:c.1488_1501del	p.Pro497GlufsTer34	p.P497Efs*34	ENST00000337652	NM_130803.2	496	gaGCCCCCGCCGCCCAag/gaag																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115110002	115110002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	219	628	0	ENST00000257566.3:c.1876del	p.His626ThrfsTer6	p.H626Tfs*6	ENST00000257566	NM_016569.3	626	Cac/ac																																												NEWRECORD																																		
PRKAR1A	5573	MSKCC	GRCh37	17	66520205	66520206	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-	rs1307872454		P-0005525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	110	496	0	ENST00000358598.2:c.491_492del	p.Val164AspfsTer5	p.V164Dfs*5	ENST00000358598	NM_212471.2	163	acTGtg/actg																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577329	64577330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	69	651	2	ENST00000337652.1:c.252dup	p.Ile85TyrfsTer32	p.I85Yfs*32	ENST00000337652	NM_130803.2	84	-/T																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	128	707	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	17	858	0	ENST00000374080.3:c.131G>A	p.Gly44Asp	p.G44D	ENST00000374080		44	gGt/gAt																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	125	595	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308																																													NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100660	8100660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	186	966	0	ENST00000346208.3:c.634T>G	p.Ser212Ala	p.S212A	ENST00000346208		212	Tcc/Gcc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68856094	68856095	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGTGCCAACTGGACCATTC			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	106	821	0	ENST00000261769.5:c.1906_1924dup	p.Tyr642CysfsTer27	p.Y642Cfs*27	ENST00000261769	NM_004360.3	634	-/AGTGCCAACTGGACCATTC																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11984681	11984684	+	frameshift_variant	Frame_Shift_Del	DEL	TGAG	TGAG	-			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	29	504	1	ENST00000353533.5:c.227_230del	p.Leu76GlnfsTer11	p.L76Qfs*11	ENST00000353533	NM_003010.3	76	cTGAGa/ca																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56183253	56183253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	134	620	0	ENST00000399503.3:c.4163A>G	p.Asp1388Gly	p.D1388G	ENST00000399503	NM_005921.1	1388	gAt/gGt																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115114237	115114239	+	frameshift_variant	Frame_Shift_Ins	INS	TCA	TCA	CCAT			P-0014866-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	130	806	0	ENST00000257566.3:c.978_980delinsATGG	p.Asp326GlufsTer12	p.D326Efs*12	ENST00000257566	NM_016569.3	326	gaTGAa/gaATGGa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	117	480	1				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	128	486	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106523606	106523606	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	100	307	0	ENST00000359195.3:c.2758A>T	p.Lys920Ter	p.K920*	ENST00000359195	NM_002649.2	920	Aag/Tag																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94066482	94066482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1601	296	917	1	ENST00000369303.4:c.1277G>A	p.Arg426Gln	p.R426Q	ENST00000369303	NM_004440.3	426	cGa/cAa																																												NEWRECORD																																		
TNFRSF14	0	MSKCC	GRCh37	1	2492096	2492097	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1326	325	730	0	ENST00000355716.4:c.500dupC	p.Thr169AspfsTer65	p.T169Dfs*65	ENST00000355716	NM_003820.2	165	tgc/tgCc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458456	120458456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	92	352	0	ENST00000256646.2:c.6889C>T	p.Pro2297Ser	p.P2297S	ENST00000256646	NM_024408.3	2297	Cct/Tct																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190719163	190719163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	70	275	0	ENST00000441310.2:c.1165C>T	p.Pro389Ser	p.P389S	ENST00000441310	NM_000534.4	389	Cca/Tca																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55127420	55127420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	204	709	0	ENST00000257290.5:c.208G>A	p.Glu70Lys	p.E70K	ENST00000257290	NM_006206.4	70	Gaa/Aaa																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55955581	55955581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1479	219	866	1	ENST00000263923.4:c.3364G>A	p.Gly1122Arg	p.G1122R	ENST00000263923	NM_002253.2	1122	Gga/Aga																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149453012	149453012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	150	561	0	ENST00000286301.3:c.934G>A	p.Glu312Lys	p.E312K	ENST00000286301	NM_005211.3	312	Gag/Aag																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117681034	117681034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	155	552	0	ENST00000368508.3:c.3586G>A	p.Gly1196Arg	p.G1196R	ENST00000368508	NM_002944.2	1196	Gga/Aga																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150001541	150001541	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	116	369	0	ENST00000253339.5:c.2063A>T	p.Lys688Ile	p.K688I	ENST00000253339		688	aAa/aTa																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	463370	463370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	195	593	2	ENST00000399788.2:c.901C>T	p.Arg301Trp	p.R301W	ENST00000399788	NM_001042603.1	301	Cgg/Tgg																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435925	110435925	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	58	162	0	ENST00000375856.3:c.2476A>G	p.Met826Val	p.M826V	ENST00000375856	NM_003749.2	826	Atg/Gtg																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2222516	2222516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	169	690	1	ENST00000326181.6:c.710C>T	p.Pro237Leu	p.P237L	ENST00000326181	NM_032271.2	237	cCc/cTc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10031883	10031883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	139	517	0	ENST00000330684.3:c.940C>T	p.Pro314Ser	p.P314S	ENST00000330684	NM_001134407.1	314	Ccc/Tcc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68844122	68844122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	143	511	0	ENST00000261769.5:c.710C>T	p.Ser237Phe	p.S237F	ENST00000261769	NM_004360.3	237	tCc/tTc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15968232	15968232	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	229	667	1	ENST00000268712.3:c.5053C>T	p.Gln1685Ter	p.Q1685*	ENST00000268712	NM_006311.3	1685	Cag/Tag																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29528441	29528441	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	196	484	0	ENST00000358273.4:c.1198C>T	p.Gln400Ter	p.Q400*	ENST00000358273	NM_001042492.2	400	Cag/Tag																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37687321	37687321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	225	630	0	ENST00000447079.4:c.4225C>T	p.Pro1409Ser	p.P1409S	ENST00000447079	NM_015083.1	1409	Ccc/Tcc																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45867032	45867032	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	64	271	0	ENST00000391945.4:c.1087C>T	p.Gln363Ter	p.Q363*	ENST00000391945	NM_000400.3	363	Cag/Tag																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39933083	39933083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	215	380	0	ENST00000378444.4:c.1516C>T	p.Pro506Ser	p.P506S	ENST00000378444	NM_001123385.1	506	Ccc/Tcc																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	382	673	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	245	544	0	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187629613	187629613	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	59	592	0	ENST00000441802.2:c.1369A>C	p.Asn457His	p.N457H	ENST00000441802	NM_005245.3	457	Aat/Cat																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133219096	133219096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	125	510	0	ENST00000320574.5:c.4948A>T	p.Ser1650Cys	p.S1650C	ENST00000320574	NM_006231.2	1650	Agc/Tgc																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14041710	14041710	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	111	611	0	ENST00000311895.7:c.2257A>T	p.Lys753Ter	p.K753*	ENST00000311895	NM_005236.2	753	Aag/Tag																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42795364	42795364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	206	434	0	ENST00000575354.2:c.2444C>T	p.Ala815Val	p.A815V	ENST00000575354	NM_015125.3	815	gCc/gTc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937958	76937958	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	41	639	0	ENST00000373344.5:c.2790T>A	p.Ser930Arg	p.S930R	ENST00000373344	NM_000489.3	930	agT/agA																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	215	310	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	98	274	0	ENST00000288602.6:c.1780G>T	p.Asp594Tyr	p.D594Y	ENST00000288602	NM_004333.4	594	Gat/Tat																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56448309	56448309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	107	209	0	ENST00000407977.2:c.338G>T	p.Arg113Leu	p.R113L	ENST00000407977		113	cGa/cTa																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10600329	10600329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	151	365	0	ENST00000171111.5:c.1526G>A	p.Gly509Glu	p.G509E	ENST00000171111	NM_203500.1	509	gGg/gAg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70357597	70357597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	94	439	0	ENST00000374080.3:c.5848C>T	p.His1950Tyr	p.H1950Y	ENST00000374080		1950	Cat/Tat																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123205134	123205134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	69	463	1	ENST00000218089.9:c.2494C>A	p.His832Asn	p.H832N	ENST00000218089	NM_001042749.1	832	Cat/Aat																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	161969905	161969905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	68	310	1	ENST00000366898.1:c.1064del	p.Gly355AlafsTer80	p.G355Afs*80	ENST00000366898	NM_004562.2	355	gGc/gc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220585	1220587	+	frameshift_variant	Frame_Shift_Ins	INS	GCA	GCA	TCCC			P-0003523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	70	298	0	ENST00000326873.7:c.603_605delinsTCCC	p.His202ProfsTer64	p.H202Pfs*64	ENST00000326873	NM_000455.4	201	ctGCAc/ctTCCCc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44941824	44941824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	110	235	1	ENST00000377967.4:c.3148G>A	p.Glu1050Lys	p.E1050K	ENST00000377967	NM_021140.2	1050	Gaa/Aaa																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149983320	149983320	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TT			P-0003031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	65	272	0	ENST00000253339.5:c.2938delinsAA	p.Glu980LysfsTer4	p.E980Kfs*4	ENST00000253339		980	Gaa/AAaa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44941830	44941830	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	109	247	1	ENST00000377967.4:c.3154del	p.Glu1052LysfsTer31	p.E1052Kfs*31	ENST00000377967	NM_021140.2	1052	Gaa/aa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637649	176637650	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0003031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	184	419	0	ENST00000439151.2:c.2256_2257del	p.Pro753LysfsTer11	p.P753Kfs*11	ENST00000439151	NM_022455.4	750	gCT/g																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	370	208	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	102	104	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18272777	18272777	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T	rs147990742		P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	161	231	0	ENST00000222254.8:c.817A>T	p.Ser273Cys	p.S273C	ENST00000222254	NM_005027.3	273	Agt/Tgt																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	264	299	0	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																												NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47144880	47144880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	214	231	0	ENST00000409792.3:c.4873C>T	p.Arg1625Cys	p.R1625C	ENST00000409792	NM_014159.6	1625	Cgt/Tgt																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43805764	43805764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	378	328	2	ENST00000372470.3:c.820C>T	p.Leu274Phe	p.L274F	ENST00000372470	NM_005373.2	274	Ctc/Ttc																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204518755	204518755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	351	203	0	ENST00000367182.3:c.1418C>T	p.Ser473Leu	p.S473L	ENST00000367182	NM_001278516.1	473	tCa/tTa																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52651334	52651334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	311	312	0	ENST00000394830.3:c.1762G>A	p.Glu588Lys	p.E588K	ENST00000394830	NM_018313.4	588	Gaa/Aaa																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66535307	66535307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	315	278	0	ENST00000273854.3:c.154A>G	p.Thr52Ala	p.T52A	ENST00000273854	NM_004439.5	52	Acc/Gcc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187627771	187627771	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	321	341	0	ENST00000441802.2:c.3211T>G	p.Tyr1071Asp	p.Y1071D	ENST00000441802	NM_005245.3	1071	Tac/Gac																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112178415	112178415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	387	288	0	ENST00000257430.4:c.7124A>T	p.Gln2375Leu	p.Q2375L	ENST00000257430	NM_000038.5	2375	cAa/cTa																																												NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	93965706	93965706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	608	483	0	ENST00000369303.4:c.2222G>A	p.Gly741Glu	p.G741E	ENST00000369303	NM_004440.3	741	gGa/gAa																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81972514	81972514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	678	477	2	ENST00000359376.3:c.3307G>A	p.Val1103Ile	p.V1103I	ENST00000359376	NM_002661.3	1103	Gtt/Att																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39644733	39644733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	248	240	0	ENST00000262039.4:c.2462C>T	p.Ser821Phe	p.S821F	ENST00000262039	NM_002647.2	821	tCc/tTc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15296145	15296145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	206	308	0	ENST00000263388.2:c.2219C>T	p.Ser740Phe	p.S740F	ENST00000263388	NM_000435.2	740	tCc/tTc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120459072	120459073	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	341	236	0	ENST00000256646.2:c.6272dup	p.Leu2092ProfsTer13	p.L2092Pfs*13	ENST00000256646	NM_024408.3	2091	ttc/ttTc																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0002000-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	62	371	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106196970	106196970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	89	467	0	ENST00000380013.4:c.5303C>A	p.Ala1768Glu	p.A1768E	ENST00000380013	NM_001127208.2	1768	gCa/gAa																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5210778	5210778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	173	454	1	ENST00000357368.4:c.5273C>T	p.Ala1758Val	p.A1758V	ENST00000357368	NM_002850.3	1758	gCg/gTg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40735503	40735503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	134	484	0	ENST00000373198.4:c.3370G>A	p.Glu1124Lys	p.E1124K	ENST00000373198	NM_133170.3	1124	Gag/Aag																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577571	7577572	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGTAGT			P-0003710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	135	361	0	ENST00000269305.4:c.704_709dup	p.Asn235_Tyr236dup	p.N235_Y236dup	ENST00000269305	NM_001126112.2	235	atg/aACTACAtg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	1299	607	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11217302	11217302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	330	581	0	ENST00000361445.4:c.4376C>A	p.Ala1459Asp	p.A1459D	ENST00000361445	NM_004958.3	1459	gCc/gAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	288	414	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100499	8100499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	262	634	2	ENST00000346208.3:c.473C>T	p.Pro158Leu	p.P158L	ENST00000346208		158	cCg/cTg																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741900	17741900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	17	31	0	ENST00000250003.3:c.571G>A	p.Glu191Lys	p.E191K	ENST00000250003	NM_002478.4	191	Gag/Aag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175531	112175532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	243	434	0	ENST00000257430.4:c.4241dup	p.Ser1415LysfsTer8	p.S1415Kfs*8	ENST00000257430	NM_000038.5	1414	gta/gTta																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0003894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	171	229	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212288967	212288967	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	63	261	0	ENST00000342788.4:c.2779C>T	p.Arg927Ter	p.R927*	ENST00000342788	NM_005235.2	927	Cga/Tga																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111881549	111881549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	174	223	0	ENST00000393256.3:c.227G>A	p.Arg76Lys	p.R76K	ENST00000393256	NM_006538.4	76	aGa/aAa																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134884819	134884819	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	43	180	0	ENST00000398015.3:c.1595A>T	p.Lys532Met	p.K532M	ENST00000398015	NM_004441.4	532	aAg/aTg																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142272212	142272212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	103	227	0	ENST00000350721.4:c.2662G>T	p.Ala888Ser	p.A888S	ENST00000350721	NM_001184.3	888	Gca/Tca																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29008080	29008080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	42	171	0	ENST00000282397.4:c.689T>C	p.Ile230Thr	p.I230T	ENST00000282397	NM_002019.4	230	aTa/aCa																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88678598	88678598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	21	97	0	ENST00000360948.2:c.938C>A	p.Pro313His	p.P313H	ENST00000360948	NM_001012338.2	313	cCt/cAt																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88679708	88679708	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	107	214	0	ENST00000360948.2:c.755A>C	p.Asn252Thr	p.N252T	ENST00000360948	NM_001012338.2	252	aAc/aCc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29587512	29587512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	151	192	0	ENST00000358273.4:c.4556G>T	p.Gly1519Val	p.G1519V	ENST00000358273	NM_001042492.2	1519	gGg/gTg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5211746	5211746	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	57	209	0	ENST00000357368.4:c.5089T>G	p.Phe1697Val	p.F1697V	ENST00000357368	NM_002850.3	1697	Ttc/Gtc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27094333	27094334	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0003894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	89	187	0	ENST00000324856.7:c.3041_3042insCA	p.Gly1015ArgfsTer25	p.G1015Rfs*25	ENST00000324856	NM_006015.4	1014	ctg/ctCAg																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21968233	21968243	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	CGGGGATGTCT	CGGGGATGTCT	G			P-0003894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	56	109	0	ENST00000304494.5:c.458-2_466delAGACATCCCCGinsC		p.X153_splice	ENST00000304494	NM_000077.4	153																																													NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21968233	21968243	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	CGGGGATGTCT	CGGGGATGTCT	G			P-0003894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	56	109	0	ENST00000304494.5:c.458-2_466delAGACATCCCCGinsC		p.X153_splice	ENST00000304494	NM_000077.4	153																																													NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101867538	101867540	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0014493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			46	12	24	0	ENST00000374994.4:c.76_78delGCG	p.Ala26del	p.A26del	ENST00000374994	NM_004612.2	17	ctGGCg/ctg																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881414	37881414	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	373	574	0	ENST00000269571.5:c.2606T>G	p.Leu869Arg	p.L869R	ENST00000269571		869	cTg/cGg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68862105	68862106	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	257	365	0	ENST00000261769.5:c.2193_2194insG	p.Arg732AlafsTer16	p.R732Afs*16	ENST00000261769	NM_004360.3	731	-/G																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	301	379	0	ENST00000263967.3:c.3061T>A	p.Tyr1021Asn	p.Y1021N	ENST00000263967	NM_006218.2	1021	Tac/Aac																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178044	56178044	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	291	358	0	ENST00000399503.3:c.3018del	p.Gln1007ArgfsTer75	p.Q1007Rfs*75	ENST00000399503	NM_005921.1	1006	cTt/ct																																												NEWRECORD																																		
XIAP	0	MSKCC	GRCh37	X	123040864	123040864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014493-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			915	485	763	0	ENST00000355640.3:c.1327C>T	p.Arg443Cys	p.R443C	ENST00000355640		443	Cgc/Tgc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120708	115120709	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	141	496	0	ENST00000257566.3:c.296_297dupTG	p.Glu100TrpfsTer40	p.E100Wfs*40	ENST00000257566	NM_016569.3	99	-/TG																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	72	226	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89347546	89347546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	63	568	0	ENST00000301030.4:c.5404G>A	p.Glu1802Lys	p.E1802K	ENST00000301030	NM_001256183.1	1802	Gaa/Aaa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508903	106508903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	41	163	1	ENST00000359195.3:c.897C>A	p.Asn299Lys	p.N299K	ENST00000359195	NM_002649.2	299	aaC/aaA																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116411567	116411567	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	98	252	0	ENST00000397752.3:c.2746T>C	p.Ser916Pro	p.S916P	ENST00000397752	NM_000245.2	916	Tct/Cct																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97864047	97864047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	61	398	1	ENST00000289081.3:c.1619G>A	p.Ser540Asn	p.S540N	ENST00000289081	NM_000136.2	540	aGc/aAc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120668	115120668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	132	558	0	ENST00000257566.3:c.338G>A	p.Trp113Ter	p.W113*	ENST00000257566	NM_016569.3	113	tGg/tAg																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32936802	32936802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	67	338	0	ENST00000380152.3:c.7948G>C	p.Glu2650Gln	p.E2650Q	ENST00000380152		2650	Gaa/Caa																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842724	68842724	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	76	379	0	ENST00000261769.5:c.661del	p.Asp221IlefsTer29	p.D221Ifs*29	ENST00000261769	NM_004360.3	220	ctG/ct																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	76	242	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112153	115112154	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	56	308	0	ENST00000257566.3:c.1586dup	p.Ala530ArgfsTer162	p.A530Rfs*162	ENST00000257566	NM_016569.3	529	ggc/ggGc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0004367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	117	132	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	227	309	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0004367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	133	204	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180057230	180057230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	26	217	0	ENST00000261937.6:c.508C>T	p.Arg170Cys	p.R170C	ENST00000261937	NM_182925.4	170	Cgc/Tgc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44929487	44929487	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	522	528	0	ENST00000377967.4:c.2587C>T	p.Gln863Ter	p.Q863*	ENST00000377967	NM_021140.2	863	Cag/Tag																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78432379	78432379	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0004367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	85	300	0	ENST00000370768.2:c.472C>T	p.Gln158Ter	p.Q158*	ENST00000370768	NM_003902.3	158	Cag/Tag																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	417	339	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138426021	138426021	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	296	336	0	ENST00000289153.2:c.1510T>A	p.Tyr504Asn	p.Y504N	ENST00000289153	NM_006219.2	504	Tat/Aat																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89882341	89882341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	442	474	0	ENST00000389301.3:c.133G>C	p.Glu45Gln	p.E45Q	ENST00000389301	NM_000135.2	45	Gaa/Caa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123199797	123199798	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0004367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	261	359	0	ENST00000218089.9:c.2096+2dup		p.X699_splice	ENST00000218089	NM_001042749.1	699																																													NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44937712	44937713	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	280	404	0	ENST00000377967.4:c.2900_2901insG	p.Thr968TyrfsTer11	p.T968Yfs*11	ENST00000377967	NM_021140.2	967	gtt/gtGt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			580	289	474	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	161	237	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	161	237	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602354	10602354	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	88	480	0	ENST00000171111.5:c.1224del	p.Met409Ter	p.M409*	ENST00000171111	NM_203500.1	408	ccC/cc																																												NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	55	372	1	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212426680	212426680	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	214	514	2	ENST00000342788.4:c.2435A>T	p.Lys812Met	p.K812M	ENST00000342788	NM_005235.2	812	aAg/aTg																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1801190	1801190	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	30	426	0	ENST00000260795.2:c.319T>A	p.Tyr107Asn	p.Y107N	ENST00000260795		107	Tac/Aac																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55268023	55268023	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201830126		P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	97	433	0	ENST00000275493.2:c.2863G>A	p.Ala955Thr	p.A955T	ENST00000275493	NM_005228.3	955	Gca/Aca																																												NEWRECORD																																		
SDHAF2	0	MSKCC	GRCh37	11	61213439	61213439	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	111	486	0	ENST00000301761.2:c.397G>T	p.Glu133Ter	p.E133*	ENST00000301761	NM_017841.2	133	Gaa/Taa																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	144	483	0	ENST00000377767.4:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000377767	NM_014953.3	479	Gac/Tac																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95598870	95598870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	122	508	0	ENST00000343455.3:c.289G>T	p.Val97Leu	p.V97L	ENST00000343455	NM_177438.2	97	Gtg/Ttg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2113037	2113037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	45	488	0	ENST00000219476.3:c.1426A>G	p.Asn476Asp	p.N476D	ENST00000219476	NM_000548.3	476	Aac/Gac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578514	7578514	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	88	438	0	ENST00000269305.4:c.416A>C	p.Lys139Thr	p.K139T	ENST00000269305	NM_001126112.2	139	aAg/aCg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220701	1220701	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	107	432	2	ENST00000326873.7:c.719C>A	p.Ser240Ter	p.S240*	ENST00000326873	NM_000455.4	240	tCg/tAg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11134239	11134239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	92	476	0	ENST00000344626.4:c.2905C>A	p.His969Asn	p.H969N	ENST00000344626	NM_003072.3	969	Cac/Aac																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40742002	40742002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			75	200	397	0	ENST00000392038.2:c.970G>A	p.Asp324Asn	p.D324N	ENST00000392038	NM_001626.4	324	Gac/Aac																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9560805	9560805	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	142	380	0	ENST00000353224.5:c.977T>A	p.Met326Lys	p.M326K	ENST00000353224	NM_177990.2	326	aTg/aAg																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29121015	29121015	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	131	562	0	ENST00000328354.6:c.542G>T	p.Arg181Leu	p.R181L	ENST00000328354	NM_007194.3	181	cGt/cTt																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48650822	48650822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	69	576	0	ENST00000376670.3:c.691T>C	p.Tyr231His	p.Y231H	ENST00000376670	NM_002049.3	231	Tat/Cat																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48652531	48652531	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	33	368	0	ENST00000376670.3:c.1202C>G	p.Pro401Arg	p.P401R	ENST00000376670	NM_002049.3	401	cCc/cGc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212543861	212543862	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	286	436	0	ENST00000342788.4:c.1537dup	p.Trp513LeufsTer16	p.W513Lfs*16	ENST00000342788	NM_005235.2	513	tgg/tTgg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108154976	108154976	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002054-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	80	274	0	ENST00000278616.4:c.3770del	p.Pro1257HisfsTer4	p.P1257Hfs*4	ENST00000278616	NM_000051.3	1257	Cca/ca																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	199	673	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	128	493	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	92	347	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533905	63533905	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	129	454	0	ENST00000307078.5:c.1249delG	p.Ala417ArgfsTer41	p.A417Rfs*41	ENST00000307078	NM_004655.3	417	Gcg/cg																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	121	427	4	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	163	581	4	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29586101	29586101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	34	471	0	ENST00000358273.4:c.4384C>T	p.Arg1462Trp	p.R1462W	ENST00000358273	NM_001042492.2	1462	Cgg/Tgg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27059230	27059230	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	153	574	0	ENST00000324856.7:c.1867G>T	p.Gly623Ter	p.G623*	ENST00000324856	NM_006015.4	623	Gga/Tga																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120462983	120462983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	52	457	0	ENST00000256646.2:c.5348C>T	p.Pro1783Leu	p.P1783L	ENST00000256646	NM_024408.3	1783	cCc/cTc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89653835	89653836	+	inframe_insertion	In_Frame_Ins	INS	-	-	TATACAGGA			P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	100	520	0	ENST00000371953.3:c.134_142dup	p.Arg47_Asn48insIleTyrArg	p.R47_N48insIYR	ENST00000371953	NM_000314.4	45	gta/gTATACAGGAta																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115109969	115109969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1104	81	848	0	ENST00000257566.3:c.1909C>T	p.Arg637Trp	p.R637W	ENST00000257566	NM_016569.3	637	Cgg/Tgg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28903769	28903769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	39	533	0	ENST00000282397.4:c.2690C>T	p.Ala897Val	p.A897V	ENST00000282397	NM_002019.4	897	gCc/gTc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89347830	89347830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	94	454	0	ENST00000301030.4:c.5120C>T	p.Thr1707Met	p.T1707M	ENST00000301030	NM_001256183.1	1707	aCg/aTg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099245	157099245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	146	555	4	ENST00000346085.5:c.182C>T	p.Thr61Met	p.T61M	ENST00000346085	NM_020732.3	61	aCg/aTg																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	37002647	37002647	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0014680-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	146	427	0	ENST00000358127.4:c.602A>G	p.Glu201Gly	p.E201G	ENST00000358127	NM_001280556.1	201	gAa/gGa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	237	723	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106078	27106078	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	156	359	0	ENST00000324856.7:c.5693delC	p.Pro1898HisfsTer25	p.P1898Hfs*25	ENST00000324856	NM_006015.4	1897	Ccc/cc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	171	461	0	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	198	498	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717608	89717608	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	212	316	0	ENST00000371953.3:c.635-2A>G		p.X212_splice	ENST00000371953	NM_000314.4	212																																													NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	195	530	1	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2956964	2956964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	164	399	0	ENST00000396946.4:c.2663G>A	p.Arg888His	p.R888H	ENST00000396946	NM_032415.4	888	cGt/cAt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27089730	27089730	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	115	310	0	ENST00000324856.7:c.2686G>T	p.Glu896Ter	p.E896*	ENST00000324856	NM_006015.4	896	Gaa/Taa																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	125	320	0	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	217	435	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	222	261	0	ENST00000371953.3:c.253+1G>A		p.X85_splice	ENST00000371953	NM_000314.4	85																																													NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	118	531	4	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178096504	178096504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	243	509	1	ENST00000397062.3:c.827C>T	p.Thr276Ile	p.T276I	ENST00000397062	NM_006164.4	276	aCa/aTa																																												NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	327	817	4	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																												NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95560476	95560476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	148	183	0	ENST00000343455.3:c.5113G>A	p.Glu1705Lys	p.E1705K	ENST00000343455	NM_177438.2	1705	Gaa/Aaa																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	279	725	2	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16265863	16265863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	259	792	0	ENST00000375759.3:c.10936C>A	p.Leu3646Ile	p.L3646I	ENST00000375759	NM_015001.2	3646	Ctc/Atc																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119582275	119582275	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	173	398	0	ENST00000316626.5:c.1126A>G	p.Thr376Ala	p.T376A	ENST00000316626		376	Acc/Gcc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177074	56177074	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	117	259	0	ENST00000399503.3:c.2344T>G	p.Ser782Ala	p.S782A	ENST00000399503	NM_005921.1	782	Tca/Gca																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67522778	67522778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	162	363	0	ENST00000274335.5:c.275C>A	p.Pro92His	p.P92H	ENST00000274335		92	cCt/cAt																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138200267	138200267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	173	357	0	ENST00000237289.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000237289	NM_001270507.1	562	cGt/cAt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55266514	55266514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	183	579	0	ENST00000275493.2:c.2806C>T	p.Pro936Ser	p.P936S	ENST00000275493	NM_005228.3	936	Cca/Tca																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151842307	151842307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	228	591	1	ENST00000262189.6:c.14105C>T	p.Ala4702Val	p.A4702V	ENST00000262189	NM_170606.2	4702	gCc/gTc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49432275	49432275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	245	775	0	ENST00000301067.7:c.8864C>T	p.Pro2955Leu	p.P2955L	ENST00000301067	NM_003482.3	2955	cCt/cTt																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103498680	103498680	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	226	644	0	ENST00000355739.4:c.64C>A	p.Leu22Met	p.L22M	ENST00000355739	NM_000123.3	22	Ctg/Atg																																												NEWRECORD																																		
STAT5A	0	MSKCC	GRCh37	17	40462546	40462546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	493	768	0	ENST00000345506.4:c.2244G>C	p.Gln748His	p.Q748H	ENST00000345506	NM_003152.3	748	caG/caC																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46279754	46279754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	226	551	0	ENST00000371998.3:c.3680C>T	p.Ala1227Val	p.A1227V	ENST00000371998		1227	gCc/gTc																																												NEWRECORD																																		
CRKL	0	MSKCC	GRCh37	22	21304087	21304087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	271	614	0	ENST00000354336.3:c.866C>A	p.Thr289Lys	p.T289K	ENST00000354336	NM_005207.3	289	aCg/aAg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591222	67591266	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGT	GTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGT	-			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	118	351	0	ENST00000274335.5:c.1746-22_1768del		p.X582_splice	ENST00000274335		582																																													NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073426	8073426	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	362	1189	2	ENST00000377482.5:c.1233del	p.Phe411LeufsTer41	p.F411Lfs*41	ENST00000377482	NM_018948.3	411	ttT/tt																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098975	178098977	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	131	298	0	ENST00000397062.3:c.68_70del	p.Leu23_Trp24delinsArg	p.L23_W24delinsR	ENST00000397062	NM_006164.4	23	cTTTgg/cgg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591087	67591088	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	166	316	0	ENST00000274335.5:c.1683dup	p.Arg562ThrfsTer6	p.R562Tfs*6	ENST00000274335		560	-/A																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	58	66	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	12	134	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	13	244	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	64	344	0	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	130	286	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25536796	25536796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	129	242	0	ENST00000264709.3:c.58G>A	p.Glu20Lys	p.E20K	ENST00000264709	NM_175629.2	20	Gag/Aag																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52682422	52682422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	91	414	0	ENST00000394830.3:c.751G>C	p.Asp251His	p.D251H	ENST00000394830	NM_018313.4	251	Gat/Cat																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32421528	32421528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	67	212	0	ENST00000332351.3:c.1064G>A	p.Arg355Lys	p.R355K	ENST00000332351	NM_024426.4	355	aGa/aAa																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102195295	102195295	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	121	505	0	ENST00000263464.3:c.55A>G	p.Thr19Ala	p.T19A	ENST00000263464	NM_001165.4	19	Acg/Gcg																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21619885	21619885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	64	335	0	ENST00000382592.4:c.281C>G	p.Ser94Cys	p.S94C	ENST00000382592	NM_014572.2	94	tCt/tGt																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3828733	3828733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	73	306	0	ENST00000262367.5:c.1909G>A	p.Glu637Lys	p.E637K	ENST00000262367	NM_004380.2	637	Gaa/Aaa																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37618422	37618422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	54	240	0	ENST00000447079.4:c.98G>A	p.Arg33Lys	p.R33K	ENST00000447079	NM_015083.1	33	aGa/aAa																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50921117	50921117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	71	370	0	ENST00000440232.2:c.3237C>G	p.Phe1079Leu	p.F1079L	ENST00000440232	NM_002691.3	1079	ttC/ttG																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40713434	40713434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	60	241	0	ENST00000373198.4:c.4081G>A	p.Ala1361Thr	p.A1361T	ENST00000373198	NM_133170.3	1361	Gcc/Acc																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123200213	123200214	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	44	325	0	ENST00000218089.9:c.2192_2193del	p.Ile731ThrfsTer16	p.I731Tfs*16	ENST00000218089	NM_001042749.1	731	aTT/a																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123202443	123202444	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	103	357	0	ENST00000218089.9:c.2296dup	p.Arg766LysfsTer19	p.R766Kfs*19	ENST00000218089	NM_001042749.1	765	-/A																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	162	364	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0009053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	112	409	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8341976	8341976	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	32	256	1	ENST00000356435.5:c.4664C>T	p.Ala1555Val	p.A1555V	ENST00000356435		1555	gCg/gTg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175475	112175476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTTGAGA			P-0009053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	83	342	0	ENST00000257430.4:c.4185_4192dupTTTTGAGA	p.Ser1398IlefsTer20	p.S1398Ifs*20	ENST00000257430	NM_000038.5	1395	agt/agTTTTGAGAt																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591141	67591152	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CCAATACTTGAT	CCAATACTTGAT	-			P-0009053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	66	280	0	ENST00000274335.5:c.1734_1745delCCAATACTTGAT	p.Asp578_Met582delinsGlu	p.D578_M582delinsE	ENST00000274335		578	gaCCAATACTTGATg/gag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0005836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	61	505	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	187	357	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164686	36164686	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	157	517	0	ENST00000300305.3:c.1189del	p.Gln397LysfsTer197	p.Q397Kfs*197	ENST00000300305		397	Caa/aa																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5054748	5054748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	134	495	0	ENST00000381652.3:c.800C>T	p.Thr267Ile	p.T267I	ENST00000381652	NM_004972.3	267	aCa/aTa																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252961	36252962	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	147	341	0	ENST00000300305.3:c.400dup	p.Ala134GlyfsTer4	p.A134Gfs*4	ENST00000300305		134	gct/gGct																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68867234	68867237	+	stop_gained	Nonsense_Mutation	DEL	TGAT	TGAT	A			P-0010010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	370	419	0	ENST00000261769.5:c.2481_2484delinsA	p.Tyr827_Asp828delinsTer	p.Y827_D828delins*	ENST00000261769	NM_004360.3	827	taTGAT/taA																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	111	374	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411702	63411703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	205	855	0	ENST00000330258.3:c.1464dup	p.Leu489AlafsTer19	p.L489Afs*19	ENST00000330258	NM_152424.3	488	-/G																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0012317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	217	813	0	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																													NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68853251	68853251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	199	728	1	ENST00000261769.5:c.1634G>C	p.Arg545Pro	p.R545P	ENST00000261769	NM_004360.3	545	cGg/cCg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2114990	2115536	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCAATCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTAGGAGGTGAAGGTTGCAGTGAGCCAAGATTCTGCCACTGCACTCCAGCCTGGACGACAGAGCAAGACTCTGTCTCAAAAAGAAAAAAAAAAAGGGCCGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCTAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGTAGTGAGCTGAGATTGTGCCACCGCACTCCAGCCTGGGCGACAGAGCAAGACTCGATCTCAAAAAAAAAAAAAAAAAAAAAAAAGGTGTTTGTGGTAGAAAGTGTTCTCACGGCTGCTGACTCAGAACCATGAGCCTGTGTGTAAGTCCTGGCCTTCTCTTCAAAGGTGATGGCCCGCTCCCT	CTGCAATCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTAGGAGGTGAAGGTTGCAGTGAGCCAAGATTCTGCCACTGCACTCCAGCCTGGACGACAGAGCAAGACTCTGTCTCAAAAAGAAAAAAAAAAAGGGCCGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCTAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGTAGTGAGCTGAGATTGTGCCACCGCACTCCAGCCTGGGCGACAGAGCAAGACTCGATCTCAAAAAAAAAAAAAAAAAAAAAAAAGGTGTTTGTGGTAGAAAGTGTTCTCACGGCTGCTGACTCAGAACCATGAGCCTGTGTGTAAGTCCTGGCCTTCTCTTCAAAGGTGATGGCCCGCTCCCT	-			P-0012317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1	154	1	0	ENST00000219476.3:c.1600-528_1618del		p.X534_splice	ENST00000219476	NM_000548.3	534																																													NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	24	340	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	13	285	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	14	311	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156849033	156849033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	37	423	0	ENST00000524377.1:c.1925C>T	p.Ala642Val	p.A642V	ENST00000524377	NM_002529.3	642	gCg/gTg																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215617281	215617281	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	18	278	0	ENST00000260947.4:c.1569-2A>G		p.X523_splice	ENST00000260947	NM_000465.2	523																																													NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508176	106508176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	24	212	0	ENST00000359195.3:c.170C>T	p.Ala57Val	p.A57V	ENST00000359195	NM_002649.2	57	gCg/gTg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8500865	8500865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	22	364	0	ENST00000356435.5:c.2017C>T	p.Leu673Phe	p.L673F	ENST00000356435		673	Ctt/Ttt																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32456780	32456780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	16	144	1	ENST00000332351.3:c.112G>A	p.Gly38Ser	p.G38S	ENST00000332351	NM_024426.4	38	Ggc/Agc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	27	430	0	ENST00000342988.3:c.1067C>G	p.Pro356Arg	p.P356R	ENST00000342988	NM_005359.5	356	cCt/cGt																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12870793	12870794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	34	119	0	ENST00000228872.4:c.21dup	p.Asn8Ter	p.N8*	ENST00000228872	NM_004064.3	7	tct/tcTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577111	7577112	+	inframe_insertion	In_Frame_Ins	INS	-	-	CACAAA			P-0006317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	21	489	2	ENST00000269305.4:c.821_826dupTTTGTG	p.Val274_Cys275dup	p.V274_C275dup	ENST00000269305	NM_001126112.2	274	gcc/gTTTGTGcc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47155365	47155365	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0005682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	145	467	0	ENST00000409792.3:c.4715+1G>T		p.X1572_splice	ENST00000409792	NM_014159.6	1572																																													NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148511104	148511104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	154	428	0	ENST00000320356.2:c.1798G>T	p.Asp600Tyr	p.D600Y	ENST00000320356	NM_004456.4	600	Gac/Tac																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10191635	10191636	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	142	482	0	ENST00000256474.2:c.630dup	p.Met211AspfsTer45	p.M211Dfs*45	ENST00000256474	NM_000551.3	210	cgg/cGgg																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52437879	52437879	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	299	893	2	ENST00000460680.1:c.1282del	p.Ala428HisfsTer2	p.A428Hfs*2	ENST00000460680	NM_004656.3	428	Gca/ca																																												NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			813	199	668	3	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			561	157	612	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			329	113	344	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187524757	187524757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			721	183	679	0	ENST00000441802.2:c.10923C>A	p.His3641Gln	p.H3641Q	ENST00000441802	NM_005245.3	3641	caC/caA																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16257841	16257842	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			298	115	326	0	ENST00000375759.3:c.5111dup	p.Gly1705ArgfsTer6	p.G1705Rfs*6	ENST00000375759	NM_015001.2	1702	-/C																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32914715	32914719	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGT	AAAGT	-			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1328	372	1030	0	ENST00000380152.3:c.6223_6227del	p.Lys2075Ter	p.K2075*	ENST00000380152		2075	AAAGTt/t																																												NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			615	138	529	0	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			364	41	269	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			511	192	621	0	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105239419	105239419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			478	204	533	0	ENST00000349310.3:c.968A>G	p.Asp323Gly	p.D323G	ENST00000349310	NM_001014432.1	323	gAc/gGc																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			360	95	358	0	ENST00000237289.4:c.1368delG	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108151843	108151843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			684	49	460	1	ENST00000278616.4:c.3524C>T	p.Ala1175Val	p.A1175V	ENST00000278616	NM_000051.3	1175	gCc/gTc																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162729711	162729711	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			765	67	655	0	ENST00000367921.3:c.797A>G	p.Asn266Ser	p.N266S	ENST00000367921	NM_006182.2	266	aAt/aGt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118373433	118373433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			639	157	565	1	ENST00000534358.1:c.6826G>A	p.Val2276Ile	p.V2276I	ENST00000534358	NM_005933.3	2276	Gta/Ata																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457640	67457640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			635	216	730	1	ENST00000327367.4:c.455del	p.Pro152HisfsTer34	p.P152Hfs*34	ENST00000327367	NM_005902.3	150	ttC/tt																																												NEWRECORD																																		
PDPK1	0	MSKCC	GRCh37	16	2647685	2647685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			883	277	765	1	ENST00000342085.4:c.1588G>A	p.Gly530Arg	p.G530R	ENST00000342085	NM_002613.4	530	Ggg/Agg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821193	72821193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			988	244	878	2	ENST00000268489.5:c.10982C>T	p.Ser3661Leu	p.S3661L	ENST00000268489	NM_006885.3	3661	tCg/tTg																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11984813	11984830	+	frameshift_variant	Frame_Shift_Del	DEL	TCCACAAACCAAGTGGGC	TCCACAAACCAAGTGGGC	CAGTT			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			461	122	474	1	ENST00000353533.5:c.359_376delinsCAGTT	p.Val120AlafsTer4	p.V120Afs*4	ENST00000353533	NM_003010.3	120	gTCCACAAACCAAGTGGGCaa/gCAGTTaa																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5207953	5207953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			816	196	814	2	ENST00000357368.4:c.5758C>T	p.Pro1920Ser	p.P1920S	ENST00000357368	NM_002850.3	1920	Ccg/Tcg																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99136567	99136567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			685	192	549	1	ENST00000074304.5:c.56G>A	p.Arg19Gln	p.R19Q	ENST00000074304	NM_001134224.1	19	cGg/cAg																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46256430	46256430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	291	964	0	ENST00000371998.3:c.658A>G	p.Arg220Gly	p.R220G	ENST00000371998		220	Aga/Gga																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41574911	41574911	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			742	177	587	0	ENST00000263253.7:c.7196A>G	p.Asn2399Ser	p.N2399S	ENST00000263253	NM_001429.3	2399	aAc/aGc																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	70014298	70014298	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142372494		P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1348	291	925	1	ENST00000352241.4:c.1462G>A	p.Gly488Ser	p.G488S	ENST00000352241	NM_198159.2	488	Ggt/Agt																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142217580	142217580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			890	86	528	1	ENST00000350721.4:c.5417A>G	p.Gln1806Arg	p.Q1806R	ENST00000350721	NM_001184.3	1806	cAg/cGg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1260648	1260648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			780	161	656	0	ENST00000310581.5:c.2911C>T	p.Arg971Cys	p.R971C	ENST00000310581	NM_198253.2	971	Cgt/Tgt																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38946635	38946635	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			593	75	419	0	ENST00000357387.3:c.4334T>A	p.Phe1445Tyr	p.F1445Y	ENST00000357387	NM_152756.3	1445	tTt/tAt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157150449	157150449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			786	217	678	1	ENST00000346085.5:c.1631C>T	p.Pro544Leu	p.P544L	ENST00000346085	NM_020732.3	544	cCg/cTg																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162683689	162683689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			735	85	617	0	ENST00000366898.1:c.280G>T	p.Gly94Cys	p.G94C	ENST00000366898	NM_004562.2	94	Ggc/Tgc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139397775	139397775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000964-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			504	111	397	0	ENST00000277541.6:c.5026G>A	p.Val1676Ile	p.V1676I	ENST00000277541	NM_017617.3	1676	Gtc/Atc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	92	539	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	52	360	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857391	9857391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	133	527	5	ENST00000330684.3:c.4010C>T	p.Ser1337Leu	p.S1337L	ENST00000330684	NM_001134407.1	1337	tCg/tTg																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	182	477	0	ENST00000206249.3:c.1609T>C	p.Tyr537His	p.Y537H	ENST00000206249	NM_000125.3	537	Tat/Cat																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114917778	114917778	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	119	404	0	ENST00000543371.1:c.1270-2A>C		p.X424_splice	ENST00000543371	NM_001198531.1	424																																													NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48652533	48652533	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	104	379	0	ENST00000376670.3:c.1204A>C	p.Thr402Pro	p.T402P	ENST00000376670	NM_002049.3	402	Acc/Ccc																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80646045	80646066	+	frameshift_variant	Frame_Shift_Del	DEL	GCGTCCCGCTTGTCCCTGCGGA	GCGTCCCGCTTGTCCCTGCGGA	-			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	29	279	0	ENST00000286548.4:c.86_107del	p.Leu29ProfsTer24	p.L29Pfs*24	ENST00000286548	NM_002072.3	29	cTCCGCAGGGACAAGCGGGACGCc/cc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27087372	27087373	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	86	588	0	ENST00000324856.7:c.1950dup	p.Met651HisfsTer25	p.M651Hfs*25	ENST00000324856	NM_006015.4	649	ctc/ctCc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174909	112174910	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	173	425	0	ENST00000257430.4:c.3622dup	p.Thr1208AsnfsTer9	p.T1208Nfs*9	ENST00000257430	NM_000038.5	1206	-/A																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12043155	12043155	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0008327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	33	388	0	ENST00000353533.5:c.1041-1G>T		p.X347_splice	ENST00000353533	NM_003010.3	347																																													NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258889	16258889	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	144	452	0	ENST00000375759.3:c.6154A>T	p.Lys2052Ter	p.K2052*	ENST00000375759	NM_015001.2	2052	Aaa/Taa																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64572183	64572183	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	138	433	0	ENST00000337652.1:c.1471G>T	p.Glu491Ter	p.E491*	ENST00000337652	NM_130803.2	491	Gag/Tag																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23637579	23637579	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	95	448	0	ENST00000261584.4:c.2726T>G	p.Leu909Arg	p.L909R	ENST00000261584	NM_024675.3	909	cTt/cGt																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15973731	15973731	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	100	392	0	ENST00000268712.3:c.4261G>T	p.Glu1421Ter	p.E1421*	ENST00000268712	NM_006311.3	1421	Gaa/Taa																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17953322	17953322	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	111	294	0	ENST00000458235.1:c.664C>T	p.Arg222Cys	p.R222C	ENST00000458235	NM_000215.3	222	Cgc/Tgc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115941	8115942	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	79	226	0	ENST00000346208.3:c.1290dupT	p.Gly431TrpfsTer76	p.G431Wfs*76	ENST00000346208		429	-/T																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	95	407	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	219	887	4	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																												NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	159	578	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176675268	176675269	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	240	639	1	ENST00000439151.2:c.4591dupA	p.Met1531AsnfsTer4	p.M1531Nfs*4	ENST00000439151	NM_022455.4	1528	-/A																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	205	773	0	ENST00000269571.5:c.2305G>C	p.Asp769His	p.D769H	ENST00000269571		769	Gac/Cac																																												NEWRECORD																																		
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	274	967	4	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39931788	39931788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1186	107	960	1	ENST00000378444.4:c.2811del	p.Thr938ProfsTer18	p.T938Pfs*18	ENST00000378444	NM_001123385.1	937	ccC/cc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711874	89711874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	95	420	0	ENST00000371953.3:c.493-1G>A		p.X165_splice	ENST00000371953	NM_000314.4	165																																													NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591135	67591136	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	94	415	0	ENST00000274335.5:c.1732_1733del	p.Asp578ProfsTer23	p.D578Pfs*23	ENST00000274335		576	acGAga/acga																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110434595	110434595	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	110	437	0	ENST00000375856.3:c.3806A>C	p.Gln1269Pro	p.Q1269P	ENST00000375856	NM_003749.2	1269	cAg/cCg																																												NEWRECORD																																		
TMEM127	0	MSKCC	GRCh37	2	96920688	96920688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	173	605	3	ENST00000258439.3:c.292G>A	p.Ala98Thr	p.A98T	ENST00000258439	NM_001193304.2	98	Gcc/Acc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180048836	180048836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	202	800	0	ENST00000261937.6:c.1726C>A	p.Leu576Met	p.L576M	ENST00000261937	NM_182925.4	576	Ctg/Atg																																												NEWRECORD																																		
RAC1	0	MSKCC	GRCh37	7	6431637	6431637	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	215	376	0	ENST00000356142.4:c.190T>G	p.Tyr64Asp	p.Y64D	ENST00000356142	NM_018890.3	64	Tat/Gat																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151841806	151841806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	68	555	1	ENST00000262189.6:c.14335C>T	p.Arg4779Trp	p.R4779W	ENST00000262189	NM_170606.2	4779	Cgg/Tgg																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77047225	77047225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	65	843	0	ENST00000356341.3:c.1319C>T	p.Ala440Val	p.A440V	ENST00000356341	NM_002576.4	440	gCc/gTc																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119077278	119077278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	210	841	0	ENST00000264033.4:c.151G>A	p.Val51Met	p.V51M	ENST00000264033	NM_005188.3	51	Gtg/Atg																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435726	110435726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	81	219	0	ENST00000375856.3:c.2675G>A	p.Arg892His	p.R892H	ENST00000375856	NM_003749.2	892	cGc/cAc																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061142	38061142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	44	220	0	ENST00000250448.2:c.847G>A	p.Gly283Arg	p.G283R	ENST00000250448	NM_004496.3	283	Ggg/Agg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5207965	5207965	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	278	973	2	ENST00000357368.4:c.5746C>T	p.Arg1916Ter	p.R1916*	ENST00000357368	NM_002850.3	1916	Cga/Tga																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15296445	15296445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	245	797	0	ENST00000263388.2:c.1997G>A	p.Cys666Tyr	p.C666Y	ENST00000263388	NM_000435.2	666	tGc/tAc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164836	36164836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	132	625	1	ENST00000300305.3:c.1039A>G	p.Met347Val	p.M347V	ENST00000300305		347	Atg/Gtg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042077	42042077	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1478	275	1232	2	ENST00000219905.7:c.6276delA	p.Ala2093ProfsTer9	p.A2093Pfs*9	ENST00000219905	NM_001164273.1	2091	gAa/ga																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176683984	176683984	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1324	253	1074	0	ENST00000439151.2:c.4801del	p.Glu1601LysfsTer41	p.E1601Kfs*41	ENST00000439151	NM_022455.4	1600	Ggg/gg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831386	72831388	+	inframe_deletion	In_Frame_Del	DEL	TGC	TGC	-			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	93	767	4	ENST00000268489.5:c.5193_5195del	p.Gln1741del	p.Q1741del	ENST00000268489	NM_006885.3	1731	caGCAa/caa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27094387	27094388	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	133	489	0	ENST00000324856.7:c.3097dup	p.Glu1033GlyfsTer14	p.E1033Gfs*14	ENST00000324856	NM_006015.4	1032	gag/gaGg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49428239	49428239	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	194	739	0	ENST00000301067.7:c.10461del	p.Ser3488ProfsTer14	p.S3488Pfs*14	ENST00000301067	NM_003482.3	3487	ccC/cc																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198257779	198257781	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0012848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	184	779	0	ENST00000335508.6:c.3671_3673del	p.Pro1224del	p.P1224del	ENST00000335508	NM_012433.2	1224	cCTCat/cat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000729-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	138	227	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134884866	134884866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000729-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	170	365	0	ENST00000398015.3:c.1642G>A	p.Ala548Thr	p.A548T	ENST00000398015	NM_004441.4	548	Gcc/Acc																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50459525	50459525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000729-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	75	209	0	ENST00000331340.3:c.814G>A	p.Ala272Thr	p.A272T	ENST00000331340	NM_006060.4	272	Gcc/Acc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49433896	49433896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000729-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	115	239	0	ENST00000301067.7:c.7657C>T	p.Gln2553Ter	p.Q2553*	ENST00000301067	NM_003482.3	2553	Cag/Tag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434618	49434618	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000729-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	112	244	0	ENST00000301067.7:c.6935C>G	p.Ser2312Ter	p.S2312*	ENST00000301067	NM_003482.3	2312	tCa/tGa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29012398	29012398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000729-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	98	427	0	ENST00000282397.4:c.473G>T	p.Cys158Phe	p.C158F	ENST00000282397	NM_002019.4	158	tGc/tTc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579386	7579386	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000729-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	147	256	0	ENST00000269305.4:c.301A>T	p.Lys101Ter	p.K101*	ENST00000269305	NM_001126112.2	101	Aaa/Taa																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602475	10602475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000729-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	152	318	1	ENST00000171111.5:c.1103G>T	p.Cys368Phe	p.C368F	ENST00000171111	NM_203500.1	368	tGc/tTc																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17950343	17950344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000729-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	163	357	0	ENST00000458235.1:c.1383dup	p.Leu462AlafsTer58	p.L462Afs*58	ENST00000458235	NM_000215.3	461	-/G																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610287	10610299	+	frameshift_variant	Frame_Shift_Del	DEL	GTAGGCGAATTCA	GTAGGCGAATTCA	CC			P-0000729-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	69	379	0	ENST00000171111.5:c.411_423delinsGG	p.Ile137MetfsTer33	p.I137Mfs*33	ENST00000171111	NM_203500.1	137	atTGAATTCGCCTAC/atGG																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162731061	162731061	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	161	764	0	ENST00000367921.3:c.916T>G	p.Phe306Val	p.F306V	ENST00000367921	NM_006182.2	306	Ttc/Gtc																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71021758	71021758	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	354	755	0	ENST00000318789.4:c.1600T>A	p.Trp534Arg	p.W534R	ENST00000318789	NM_032682.5	534	Tgg/Agg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160663	56160663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	242	548	0	ENST00000399503.3:c.937C>G	p.Arg313Gly	p.R313G	ENST00000399503	NM_005921.1	313	Cgg/Ggg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624294	89624295	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	146	381	0	ENST00000371953.3:c.69dupA	p.Asp24ArgfsTer20	p.D24Rfs*20	ENST00000371953	NM_000314.4	23	tta/ttAa																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12032537	12032537	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	202	463	0	ENST00000353533.5:c.974del	p.Pro325LeufsTer4	p.P325Lfs*4	ENST00000353533	NM_003010.3	325	Cct/ct																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	206	359	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2958169	2958169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	173	433	0	ENST00000396946.4:c.2563C>T	p.Arg855Trp	p.R855W	ENST00000396946	NM_032415.4	855	Cgg/Tgg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	357	458	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	368	301	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																												NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	225	365	1	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47639655	47639655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	119	479	1	ENST00000233146.2:c.748G>A	p.Gly250Arg	p.G250R	ENST00000233146	NM_000251.2	250	Gga/Aga																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371782	55371782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	61	112	0	ENST00000297316.4:c.472G>A	p.Gly158Ser	p.G158S	ENST00000297316	NM_022454.3	158	Ggc/Agc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	193	716	2	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	98	415	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98244261	98244261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	84	529	0	ENST00000331920.6:c.716C>T	p.Ala239Val	p.A239V	ENST00000331920	NM_000264.3	239	gCg/gTg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32189003	32189003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	124	525	2	ENST00000375023.3:c.551C>T	p.Pro184Leu	p.P184L	ENST00000375023	NM_004557.3	184	cCg/cTg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49039414	49039414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1394	126	571	1	ENST00000267163.4:c.2399C>A	p.Pro800His	p.P800H	ENST00000267163	NM_000321.2	800	cCt/cAt																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11100036	11100036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1143	167	625	0	ENST00000344626.4:c.1162C>T	p.Leu388Phe	p.L388F	ENST00000344626	NM_003072.3	388	Ctt/Ttt																																												NEWRECORD																																		
ICOSLG	0	MSKCC	GRCh37	21	45655233	45655233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	130	542	2	ENST00000407780.3:c.619C>T	p.Arg207Trp	p.R207W	ENST00000407780	NM_001283052.1	207	Cgg/Tgg																																												NEWRECORD																																		
DROSHA	0	MSKCC	GRCh37	5	31493364	31493364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			822	96	432	1	ENST00000344624.3:c.1792G>A	p.Glu598Lys	p.E598K	ENST00000344624		598	Gag/Aag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175535	112175536	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGCATTA			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	87	334	0	ENST00000257430.4:c.4246_4253dup	p.Ile1418MetfsTer4	p.I1418Mfs*4	ENST00000257430	NM_000038.5	1415	agt/agTGGCATTAt																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	68930152	68930152	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014514-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	80	466	0	ENST00000288368.4:c.213G>T	p.Lys71Asn	p.K71N	ENST00000288368	NM_024870.2	71	aaG/aaT																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952117	178952117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	115	280	0	ENST00000263967.3:c.3172A>C	p.Ile1058Leu	p.I1058L	ENST00000263967	NM_006218.2	1058	Atc/Ctc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	81	164	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	135	121	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67654642	67654642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	230	484	2	ENST00000264010.4:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000264010	NM_006565.3	377	Cgt/Tgt																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41256974	41256974	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	137	287	1	ENST00000357654.3:c.213-1G>A		p.X71_splice	ENST00000357654	NM_007294.3	71																																													NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	144	289	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99160393	99160393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	173	403	0	ENST00000074304.5:c.872G>A	p.Arg291Gln	p.R291Q	ENST00000074304	NM_001134224.1	291	cGg/cAg																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158617589	158617589	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	191	474	0	ENST00000263640.3:c.1067G>A	p.Gly356Asp	p.G356D	ENST00000263640	NM_001105.4	356	gGc/gAc																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209110101	209110101	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	218	412	0	ENST00000345146.2:c.462A>G	p.Ile154Met	p.I154M	ENST00000345146	NM_005896.2	154	atA/atG																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	188	407	0	ENST00000349496.5:c.97T>G	p.Ser33Ala	p.S33A	ENST00000349496	NM_001904.3	33	Tct/Gct																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1807829	1807829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	152	413	1	ENST00000260795.2:c.1888G>A	p.Val630Met	p.V630M	ENST00000260795		630	Gtg/Atg																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55603394	55603394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	212	501	0	ENST00000288135.5:c.2750T>C	p.Phe917Ser	p.F917S	ENST00000288135	NM_000222.2	917	tTc/tCc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112178196	112178196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	195	426	0	ENST00000257430.4:c.6905C>T	p.Ser2302Leu	p.S2302L	ENST00000257430	NM_000038.5	2302	tCa/tTa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152012310	152012310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	221	380	1	ENST00000262189.6:c.503C>A	p.Ser168Tyr	p.S168Y	ENST00000262189	NM_170606.2	168	tCt/tAt																																												NEWRECORD																																		
NKX3-1	0	MSKCC	GRCh37	8	23538930	23538930	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	142	485	0	ENST00000380871.4:c.509T>C	p.Ile170Thr	p.I170T	ENST00000380871	NM_006167.3	170	aTa/aCa																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43619251	43619251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	95	256	0	ENST00000355710.3:c.2934G>T	p.Glu978Asp	p.E978D	ENST00000355710	NM_020975.4	978	gaG/gaT																																												NEWRECORD																																		
HRAS	0	MSKCC	GRCh37	11	533836	533836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	157	446	0	ENST00000311189.7:c.220A>G	p.Thr74Ala	p.T74A	ENST00000311189		74	Acc/Gcc																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32456764	32456764	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	11	144	0	ENST00000332351.3:c.128T>C	p.Leu43Ser	p.L43S	ENST00000332351	NM_024426.4	43	tTa/tCa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18793388	18793388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	215	408	0	ENST00000266497.5:c.4085G>A	p.Ser1362Asn	p.S1362N	ENST00000266497		1362	aGt/aAt																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29001981	29001981	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	158	342	0	ENST00000282397.4:c.1184T>C	p.Val395Ala	p.V395A	ENST00000282397	NM_002019.4	395	gTa/gCa																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66774159	66774159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	178	446	0	ENST00000307102.5:c.635G>A	p.Ser212Asn	p.S212N	ENST00000307102	NM_002755.3	212	aGc/aAc																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7132201	7132201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	145	378	0	ENST00000302850.5:c.2810C>T	p.Thr937Met	p.T937M	ENST00000302850	NM_000208.2	937	aCg/aTg																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10260278	10260278	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	117	317	0	ENST00000340748.4:c.2389T>C	p.Phe797Leu	p.F797L	ENST00000340748		797	Ttc/Ctc																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50918822	50918822	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	166	583	0	ENST00000440232.2:c.2692C>G	p.Gln898Glu	p.Q898E	ENST00000440232	NM_002691.3	898	Cag/Gag																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70356405	70356405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	166	607	1	ENST00000374080.3:c.5300C>A	p.Pro1767His	p.P1767H	ENST00000374080		1767	cCc/cAc																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67645357	67645357	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	135	292	0	ENST00000264010.4:c.626del	p.Lys209ArgfsTer13	p.K209Rfs*13	ENST00000264010	NM_006565.3	208	Aaa/aa																																												NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	162	321	0	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766424	66766424	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	43	141	0	ENST00000374690.3:c.1440del	p.Tyr481ThrfsTer29	p.Y481Tfs*29	ENST00000374690	NM_000044.3	479	gCc/gc																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36941189	36941189	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	317	749	0	ENST00000361632.4:c.150G>C	p.Gln50His	p.Q50H	ENST00000361632		50	caG/caC																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29091812	29091812	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	58	316	0	ENST00000328354.6:c.1145G>C	p.Arg382Thr	p.R382T	ENST00000328354	NM_007194.3	382	aGa/aCa																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48650601	48650601	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140561920		P-0012831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	290	737	0	ENST00000376670.3:c.571C>T	p.Arg191Cys	p.R191C	ENST00000376670	NM_002049.3	191	Cgt/Tgt																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57754908	57754909	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	163	305	0	ENST00000274289.3:c.281_282insT	p.Cys96MetfsTer10	p.C96Mfs*10	ENST00000274289	NM_006622.3	94	gca/gcTa																																												NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	89	458	2	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	98	559	2	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42799300	42799300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	45	136	2	ENST00000575354.2:c.4790del	p.Pro1597HisfsTer23	p.P1597Hfs*23	ENST00000575354	NM_015125.3	1595	tCc/tc																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	51	189	2	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56111579	56111579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	64	170	0	ENST00000399503.3:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000399503	NM_005921.1	60	cGg/cAg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152012410	152012410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	123	427	0	ENST00000262189.6:c.403G>A	p.Ala135Thr	p.A135T	ENST00000262189	NM_170606.2	135	Gct/Act																																												NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	65	584	0	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	166	720	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55211097	55211097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	168	619	0	ENST00000275493.2:c.340G>A	p.Glu114Lys	p.E114K	ENST00000275493	NM_005228.3	114	Gaa/Aaa																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	295	1048	9	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	107	538	1	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	202	966	2	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202139625	202139626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	192	688	2	ENST00000358485.4:c.790dup	p.Val264GlyfsTer13	p.V264Gfs*13	ENST00000358485	NM_001080125.1	262	-/G																																												NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	174	388	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90993676	90993676	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	134	408	0	ENST00000265433.3:c.247delA	p.Met83CysfsTer9	p.M83Cfs*9	ENST00000265433	NM_002485.4	83	Atg/tg																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120497796	120497796	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	168	512	0	ENST00000256646.2:c.2086A>G	p.Thr696Ala	p.T696A	ENST00000256646	NM_024408.3	696	Aca/Gca																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156844720	156844720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1171	329	1058	1	ENST00000524377.1:c.1274C>T	p.Ala425Val	p.A425V	ENST00000524377	NM_002529.3	425	gCc/gTc																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	176105684	176105684	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	114	372	0	ENST00000367669.3:c.832-1G>A		p.X278_splice	ENST00000367669	NM_022457.5	278																																													NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215633993	215633993	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	59	622	0	ENST00000260947.4:c.1358A>G	p.Asp453Gly	p.D453G	ENST00000260947	NM_000465.2	453	gAt/gGt																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220437202	220437202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	187	976	0	ENST00000243786.2:c.106C>A	p.Leu36Met	p.L36M	ENST00000243786	NM_002191.3	36	Ctg/Atg																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12645694	12645694	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs3730271		P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	187	746	0	ENST00000251849.4:c.775T>C	p.Ser259Pro	p.S259P	ENST00000251849	NM_002880.3	259	Tcc/Ccc																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138374326	138374326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	256	570	2	ENST00000289153.2:c.3118C>A	p.Gln1040Lys	p.Q1040K	ENST00000289153	NM_006219.2	1040	Cag/Aag																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294456	1294456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	133	322	0	ENST00000310581.5:c.545C>A	p.Thr182Asn	p.T182N	ENST00000310581	NM_198253.2	182	aCt/aAt																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288314	33288314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	144	484	0	ENST00000374542.5:c.1094G>A	p.Arg365Gln	p.R365Q	ENST00000374542	NM_001141970.1	365	cGg/cAg																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2987413	2987413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	59	494	0	ENST00000396946.4:c.16C>T	p.Pro6Ser	p.P6S	ENST00000396946	NM_032415.4	6	Cca/Tca																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128845623	128845623	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201012381		P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	64	516	0	ENST00000249373.3:c.920C>T	p.Thr307Ile	p.T307I	ENST00000249373	NM_005631.4	307	aCc/aTc																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128851566	128851566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	161	675	0	ENST00000249373.3:c.1891G>T	p.Ala631Ser	p.A631S	ENST00000249373	NM_005631.4	631	Gcc/Tcc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8486247	8486247	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139171396		P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	157	552	0	ENST00000356435.5:c.2570G>A	p.Arg857His	p.R857H	ENST00000356435		857	cGt/cAt																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133730249	133730249	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	173	615	0	ENST00000318560.5:c.315A>C	p.Lys105Asn	p.K105N	ENST00000318560	NM_005157.4	105	aaA/aaC																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100998607	100998607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	221	802	1	ENST00000325455.5:c.1195C>A	p.Arg399Ser	p.R399S	ENST00000325455	NM_001202474.3	399	Cgc/Agc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108129749	108129749	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	170	484	0	ENST00000278616.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000278616	NM_000051.3	805	Cga/Tga																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120980	115120980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	106	498	0	ENST00000257566.3:c.26T>C	p.Val9Ala	p.V9A	ENST00000257566	NM_016569.3	9	gTc/gCc																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	354353	354353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142097791		P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	180	585	1	ENST00000262320.3:c.1205C>T	p.Thr402Met	p.T402M	ENST00000262320	NM_003502.3	402	aCg/aTg																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30128997	30128997	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	238	903	1	ENST00000263025.4:c.769A>G	p.Ile257Val	p.I257V	ENST00000263025	NM_002746.2	257	Att/Gtt																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89337296	89337296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	137	524	0	ENST00000301030.4:c.7735C>T	p.Arg2579Cys	p.R2579C	ENST00000301030	NM_001256183.1	2579	Cgc/Tgc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29527492	29527492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	56	551	1	ENST00000358273.4:c.941G>T	p.Arg314Met	p.R314M	ENST00000358273	NM_001042492.2	314	aGg/aTg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2217783	2217783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	50	677	1	ENST00000398665.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000398665	NM_032482.2	853	Cgc/Tgc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15376280	15376280	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	76	415	0	ENST00000263377.2:c.734A>G	p.Gln245Arg	p.Q245R	ENST00000263377	NM_058243.2	245	cAg/cGg																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188297	10188297	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	160	630	0	ENST00000256474.2:c.444delT	p.Phe148LeufsTer11	p.F148Lfs*11	ENST00000256474	NM_000551.3	147	aTt/at																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	360055	360055	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	330	700	2	ENST00000262320.3:c.1034delC	p.Pro345HisfsTer69	p.P345Hfs*69	ENST00000262320	NM_003502.3	345	cCa/ca																																												NEWRECORD																																		
YAP1	0	MSKCC	GRCh37	11	101981861	101981863	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	159	617	1	ENST00000282441.5:c.286_288del	p.Phe96del	p.F96del	ENST00000282441	NM_001130145.2	94	tcCTTc/tcc																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248442	59248443	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	123	534	0	ENST00000371222.2:c.300dup	p.Lys101GlnfsTer6	p.K101Qfs*6	ENST00000371222	NM_002228.3	100	-/C																																												NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	265	570	2	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33287888	33287889	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCT			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	91	612	0	ENST00000374542.5:c.1362_1364dup	p.Glu457dup	p.E457dup	ENST00000374542	NM_001141970.1	457	gag/gaAGAg																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	137	628	1	ENST00000358485.4:c.1245delT	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47709925	47709925	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	164	611	0	ENST00000233146.2:c.2647del	p.Ile883LeufsTer9	p.I883Lfs*9	ENST00000233146	NM_000251.2	881	gAa/ga																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66509112	66509113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	55	409	0	ENST00000273854.3:c.214dup	p.Asp72GlyfsTer17	p.D72Gfs*17	ENST00000273854	NM_004439.5	72	gac/gGac																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29912152	29912153	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0005400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	20	68	0	ENST00000376809.5:c.873_874delinsAG	p.Lys292Glu	p.K292E	ENST00000376809	NM_002116.7	291	ccCAag/ccAGag																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	38	132	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	197	404	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0000933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	89	363	3	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579314	7579314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0000933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	48	314	0	ENST00000269305.4:c.373A>G	p.Thr125Ala	p.T125A	ENST00000269305	NM_001126112.2	125	Acg/Gcg																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248583	59248584	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0000933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	163	520	0	ENST00000371222.2:c.158_159dup	p.Arg54SerfsTer27	p.R54Sfs*27	ENST00000371222	NM_002228.3	53	-/TC																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174113	112174113	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	84	427	0	ENST00000257430.4:c.2825del	p.Asn942IlefsTer13	p.N942Ifs*13	ENST00000257430	NM_000038.5	941	gAa/ga																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49436570	49436571	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001430-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			673	115	314	0	ENST00000301067.7:c.5735_5736insA	p.Gly1913TrpfsTer44	p.G1913Wfs*44	ENST00000301067	NM_003482.3	1912	cct/ccAt																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0009518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	500	626	1	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	324	487	0	ENST00000227507.2:c.857C>T	p.Thr286Ile	p.T286I	ENST00000227507	NM_053056.2	286	aCa/aTa																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	429	493	0	ENST00000349496.5:c.109T>C	p.Ser37Pro	p.S37P	ENST00000349496	NM_001904.3	37	Tct/Cct																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33286892	33286892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	318	371	1	ENST00000374542.5:c.2045C>T	p.Ser682Phe	p.S682F	ENST00000374542	NM_001141970.1	682	tCc/tTc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692809	89692809	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	775	285	0	ENST00000371953.3:c.293T>G	p.Leu98Arg	p.L98R	ENST00000371953	NM_000314.4	98	cTa/cGa																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41566465	41566465	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	610	590	0	ENST00000263253.7:c.4342T>G	p.Phe1448Val	p.F1448V	ENST00000263253	NM_001429.3	1448	Ttc/Gtc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591106	67591107	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AACC			P-0009518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	390	370	0	ENST00000274335.5:c.1701_1704dup	p.Asp569ThrfsTer34	p.D569Tfs*34	ENST00000274335		567	aaa/aAACCaa																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	63	407	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	51	332	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	85	401	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119111	70119111	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	27	137	1	ENST00000245479.2:c.683C>A	p.Ser228Ter	p.S228*	ENST00000245479	NM_000346.3	228	tCg/tAg																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180051054	180051054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	49	356	2	ENST00000261937.6:c.1429C>T	p.Arg477Trp	p.R477W	ENST00000261937	NM_182925.4	477	Cgg/Tgg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81925183	81925183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	66	571	0	ENST00000359376.3:c.974C>T	p.Ser325Leu	p.S325L	ENST00000359376	NM_002661.3	325	tCg/tTg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173668	112173669	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	52	322	0	ENST00000257430.4:c.2380dup	p.Ser794LysfsTer5	p.S794Kfs*5	ENST00000257430	NM_000038.5	793	caa/cAaa																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	118	359	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	45	219	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0004757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	115	307	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	62	443	1	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0004757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	82	269	2	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57753199	57753199	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	50	335	0	ENST00000274289.3:c.817A>G	p.Met273Val	p.M273V	ENST00000274289	NM_006622.3	273	Atg/Gtg																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56481823	56481823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	59	463	0	ENST00000267101.3:c.751G>A	p.Asp251Asn	p.D251N	ENST00000267101	NM_001982.3	251	Gac/Aac																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47040640	47040640	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			5	51	228	0	ENST00000329236.7:c.1041G>A	p.Trp347Ter	p.W347*	ENST00000329236	NM_001204466.1	347	tgG/tgA																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652054	36652055	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	80	524	0	ENST00000244741.5:c.178dup	p.Glu60GlyfsTer3	p.E60Gfs*3	ENST00000244741	NM_000389.4	59	ctg/ctGg																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36651995	36651995	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	18	541	0	ENST00000244741.5:c.119del	p.Gly40AlafsTer108	p.G40Afs*108	ENST00000244741	NM_000389.4	39	gcG/gc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44949171	44949172	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			11	38	234	0	ENST00000377967.4:c.3733dup	p.Thr1245AsnfsTer6	p.T1245Nfs*6	ENST00000377967	NM_021140.2	1244	-/A																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652125	36652126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	23	399	0	ENST00000244741.5:c.247_248insT	p.Arg83LeufsTer6	p.R83Lfs*6	ENST00000244741	NM_000389.4	83	cgg/cTgg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	115	874	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10191488	10191488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	92	482	0	ENST00000256474.2:c.481C>T	p.Arg161Ter	p.R161*	ENST00000256474	NM_000551.3	161	Cga/Tga																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29509603	29509603	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	39	596	1	ENST00000358273.4:c.808C>T	p.Gln270Ter	p.Q270*	ENST00000358273	NM_001042492.2	270	Caa/Taa																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52610656	52610657	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	75	587	0	ENST00000394830.3:c.3516dup	p.His1173SerfsTer8	p.H1173Sfs*8	ENST00000394830	NM_018313.4	1172	-/T																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55565803	55565803	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	38	701	0	ENST00000288135.5:c.627A>T	p.Lys209Asn	p.K209N	ENST00000288135	NM_000222.2	209	aaA/aaT																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53246393	53246393	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	159	508	0	ENST00000375401.3:c.589del	p.Leu197TyrfsTer37	p.L197Yfs*37	ENST00000375401	NM_004187.3	197	Cta/ta																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47161720	47161730	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTTCCCTTG	ATTTTCCCTTG	T			P-0014147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	111	683	0	ENST00000409792.3:c.4396_4406delinsA	p.Gln1466SerfsTer14	p.Q1466Sfs*14	ENST00000409792	NM_014159.6	1466	CAAGGGAAAATg/Ag																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3807905	3807906	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTCTTG			P-0001030-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	171	364	0	ENST00000262367.5:c.3507_3513dup	p.Ser1172GlnfsTer7	p.S1172Qfs*7	ENST00000262367	NM_004380.2	1171	-/CAAGACA																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	84	403	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	30	379	0	ENST00000278616.4:c.8432dupA	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190742011	190742011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	51	396	0	ENST00000441310.2:c.2648G>A	p.Arg883His	p.R883H	ENST00000441310	NM_000534.4	883	cGt/cAt																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88420269	88420269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	63	357	0	ENST00000360948.2:c.2417G>T	p.Cys806Phe	p.C806F	ENST00000360948	NM_001012338.2	806	tGc/tTc																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637724	176637724	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	87	510	0	ENST00000439151.2:c.2324A>G	p.Gln775Arg	p.Q775R	ENST00000439151	NM_022455.4	775	cAa/cGa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637747	176637747	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	94	552	0	ENST00000439151.2:c.2347A>G	p.Lys783Glu	p.K783E	ENST00000439151	NM_022455.4	783	Aaa/Gaa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151847993	151847993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	280	507	1	ENST00000262189.6:c.12766G>A	p.Glu4256Lys	p.E4256K	ENST00000262189	NM_170606.2	4256	Gaa/Aaa																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32456738	32456738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	101	271	0	ENST00000332351.3:c.154C>T	p.Arg52Cys	p.R52C	ENST00000332351	NM_024426.4	52	Cgt/Tgt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244664	46244664	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	326	692	0	ENST00000334344.6:c.2758C>T	p.Gln920Ter	p.Q920*	ENST00000334344	NM_152641.2	920	Cag/Tag																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54958089	54958089	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	159	604	0	ENST00000312783.6:c.518G>A	p.Gly173Glu	p.G173E	ENST00000312783	NM_198436.1	173	gGa/gAa																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766326	66766326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	63	185	0	ENST00000374690.3:c.1338G>T	p.Leu446Phe	p.L446F	ENST00000374690	NM_000044.3	446	ttG/ttT																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12011150	12011151	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	227	641	0	ENST00000353533.5:c.558dup	p.Lys187Ter	p.K187*	ENST00000353533	NM_003010.3	186	gat/gaTt																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115840	8115850	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTCCAGACA	CTCTCCAGACA	-			P-0008833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1399	540	740	0	ENST00000346208.3:c.1187_1197del	p.Leu396HisfsTer107	p.L396Hfs*107	ENST00000346208		396	CTCTCCAGACAc/c																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	103	280	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99170797	99170797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	236	549	0	ENST00000074304.5:c.1426G>A	p.Ala476Thr	p.A476T	ENST00000074304	NM_001134224.1	476	Gct/Act																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52678781	52678781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	296	376	0	ENST00000394830.3:c.838T>C	p.Phe280Leu	p.F280L	ENST00000394830	NM_018313.4	280	Ttt/Ctt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106157728	106157728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	179	436	2	ENST00000380013.4:c.2629G>C	p.Asp877His	p.D877H	ENST00000380013	NM_001127208.2	877	Gat/Cat																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38944570	38944570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	196	523	0	ENST00000357387.3:c.4891T>C	p.Cys1631Arg	p.C1631R	ENST00000357387	NM_152756.3	1631	Tgt/Cgt																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93626890	93626890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	600	625	0	ENST00000375746.1:c.737A>C	p.Tyr246Ser	p.Y246S	ENST00000375746	NM_001174167.1	246	tAt/tCt																																												NEWRECORD																																		
RAD51D	0	MSKCC	GRCh37	17	33427978	33427978	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	468	639	0	ENST00000335858.7:c.645G>C	p.Gln215His	p.Q215H	ENST00000335858	NM_133629.2	215	caG/caC																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	347795	347816	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGTGTGGTTCCAGGCCCCA	GGCTGTGTGGTTCCAGGCCCCA	-			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	89	619	0	ENST00000262320.3:c.1690_1711del	p.Trp564MetfsTer134	p.W564Mfs*134	ENST00000262320	NM_003502.3	564	TGGGGCCTGGAACCACACAGCCat/at																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44937647	44937679	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GGAAAATAAACGTGATGCTTTCTTTCCTCCATT	GGAAAATAAACGTGATGCTTTCTTTCCTCCATT	-			P-0006840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	94	234	0	ENST00000377967.4:c.2835_2867del	p.Glu946_Leu956del	p.E946_L956del	ENST00000377967	NM_021140.2	945	ttGGAAAATAAACGTGATGCTTTCTTTCCTCCATTa/tta																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	313	287	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	71	211	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66931483	66931483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	162	209	0	ENST00000374690.3:c.2125G>T	p.Gly709Ter	p.G709*	ENST00000374690	NM_000044.3	709	Gga/Tga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27102097	27102098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	138	414	0	ENST00000324856.7:c.5026dup	p.Leu1676ProfsTer22	p.L1676Pfs*22	ENST00000324856	NM_006015.4	1675	tcc/tCcc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55227856	55227857	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT			P-0014564-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	34	308	0	ENST00000275493.2:c.1323_1324insGTT	p.Val441dup	p.V441dup	ENST00000275493	NM_005228.3	441	-/GTT																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	161	433	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1186	286	789	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874092	151874093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	236	641	0	ENST00000262189.6:c.8445dupA	p.Ser2816IlefsTer6	p.S2816Ifs*6	ENST00000262189	NM_170606.2	2815	-/A																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	195	507	0	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	250	416	4	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32953632	32953633	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	242	651	0	ENST00000380152.3:c.8940dupA	p.Glu2981ArgfsTer37	p.E2981Rfs*37	ENST00000380152		2978	tca/tcAa																																												NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	110	168	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	163	303	1	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	167	370	0	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717727	89717727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	122	242	0	ENST00000371953.3:c.752G>T	p.Gly251Val	p.G251V	ENST00000371953	NM_000314.4	251	gGt/gTt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11182050	11182050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	142	321	0	ENST00000361445.4:c.6796C>T	p.Arg2266Cys	p.R2266C	ENST00000361445	NM_004958.3	2266	Cgc/Tgc																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37070354	37070354	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200830026		P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	167	572	2	ENST00000231790.2:c.1489C>T	p.Arg497Trp	p.R497W	ENST00000231790	NM_000249.3	497	Cgg/Tgg																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86681156	86681156	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	177	420	0	ENST00000274376.6:c.2797G>C	p.Val933Leu	p.V933L	ENST00000274376	NM_002890.2	933	Gtg/Ctg																																												NEWRECORD																																		
CCND1	0	MSKCC	GRCh37	11	69456116	69456116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	328	503	2	ENST00000227507.2:c.35C>T	p.Thr12Ile	p.T12I	ENST00000227507	NM_053056.2	12	aCc/aTc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46123901	46123901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	234	345	0	ENST00000334344.6:c.167C>T	p.Thr56Ile	p.T56I	ENST00000334344	NM_152641.2	56	aCt/aTt																																												NEWRECORD																																		
STAT5B	0	MSKCC	GRCh37	17	40364210	40364210	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	221	561	0	ENST00000293328.3:c.1474-2A>G		p.X492_splice	ENST00000293328	NM_012448.3	492																																													NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50921157	50921157	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1339	348	637	0	ENST00000440232.2:c.3277G>T	p.Glu1093Ter	p.E1093*	ENST00000440232	NM_002691.3	1093	Gag/Tag																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53226124	53226124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	220	420	1	ENST00000375401.3:c.2725C>T	p.Arg909Trp	p.R909W	ENST00000375401	NM_004187.3	909	Cgg/Tgg																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100615569	100615569	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	195	584	1	ENST00000308731.7:c.763C>T	p.Arg255Ter	p.R255*	ENST00000308731	NM_000061.2	255	Cga/Tga																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63845624	63845627	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	112	319	2	ENST00000279873.7:c.1366_1369del	p.Glu456MetfsTer22	p.E456Mfs*22	ENST00000279873	NM_032199.2	455	AAAGaa/aa																																												NEWRECORD																																		
CCND1	0	MSKCC	GRCh37	11	69466039	69466041	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	229	447	0	ENST00000227507.2:c.878_880del	p.Val293del	p.V293del	ENST00000227507	NM_053056.2	293	GTG/-																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118391565	118391565	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	67	252	0	ENST00000534358.1:c.11483delA	p.Lys3828ArgfsTer31	p.K3828Rfs*31	ENST00000534358	NM_005933.3	3826	ttA/tt																																												NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185191049	185191049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	256	473	0	ENST00000265026.3:c.1934del	p.Pro645LeufsTer19	p.P645Lfs*19	ENST00000265026	NM_004721.4	644	Ccc/cc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	513	533	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76920172	76920173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	493	564	0	ENST00000373344.5:c.3904dupA	p.Arg1302LysfsTer7	p.R1302Kfs*7	ENST00000373344	NM_000489.3	1302	aga/aAga																																												NEWRECORD																																		
H3F3C	0	MSKCC	GRCh37	12	31944808	31944808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	88	738	0	ENST00000340398.3:c.293C>T	p.Ala98Val	p.A98V	ENST00000340398	NM_001013699.2	98	gCg/gTg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48916815	48916815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	221	467	2	ENST00000267163.4:c.345C>G	p.Phe115Leu	p.F115L	ENST00000267163	NM_000321.2	115	ttC/ttG																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103515342	103515342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	188	536	0	ENST00000355739.4:c.1843C>A	p.Leu615Met	p.L615M	ENST00000355739	NM_000123.3	615	Ctg/Atg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0012120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	214	384	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138461563	138461563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	333	675	1	ENST00000289153.2:c.458G>A	p.Arg153His	p.R153H	ENST00000289153	NM_006219.2	153	cGc/cAc																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67100703	67100703	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0012120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	158	542	0	ENST00000412916.2:c.399+2T>C		p.X133_splice	ENST00000412916		133																																													NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41226448	41226448	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	119	858	1	ENST00000357654.3:c.4575A>T	p.Gln1525His	p.Q1525H	ENST00000357654	NM_007294.3	1525	caA/caT																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115730	8115731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGC			P-0012120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	145	813	0	ENST00000346208.3:c.1078_1081dup	p.Ile361ArgfsTer11	p.I361Rfs*11	ENST00000346208		359	gaa/gaAGGCa																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52442077	52442077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	338	305	0	ENST00000460680.1:c.272G>T	p.Cys91Phe	p.C91F	ENST00000460680	NM_004656.3	91	tGt/tTt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101558	27101558	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	380	322	0	ENST00000324856.7:c.4840C>T	p.Gln1614Ter	p.Q1614*	ENST00000324856	NM_006015.4	1614	Cag/Tag																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	464323	464323	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	69	375	0	ENST00000399788.2:c.870+1G>A		p.X290_splice	ENST00000399788	NM_001042603.1	290																																													NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11098561	11098562	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTCGAC			P-0005000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	117	302	0	ENST00000344626.4:c.1083_1089dup	p.Val364ArgfsTer25	p.V364Rfs*25	ENST00000344626	NM_003072.3	360	ggc/ggCCTCGACc																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0014645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1147	116	622	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578445	7578446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			775	221	619	0	ENST00000269305.4:c.484dup	p.Ile162AsnfsTer19	p.I162Nfs*19	ENST00000269305	NM_001126112.2	162	atc/aAtc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15291780	15291780	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	204	661	0	ENST00000263388.2:c.2986C>T	p.Gln996Ter	p.Q996*	ENST00000263388	NM_000435.2	996	Cag/Tag																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1260600	1260600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	80	572	0	ENST00000310581.5:c.2959C>G	p.Leu987Val	p.L987V	ENST00000310581	NM_198253.2	987	Ctg/Gtg																																												NEWRECORD																																		
SESN1	0	MSKCC	GRCh37	6	109319929	109319929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	72	648	0	ENST00000436639.2:c.759G>T	p.Trp253Cys	p.W253C	ENST00000436639	NM_014454.2	253	tgG/tgT																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50467718	50467718	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014645-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	196	686	0	ENST00000331340.3:c.953C>G	p.Ala318Gly	p.A318G	ENST00000331340	NM_006060.4	318	gCc/gGc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0002330-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			595	1046	477	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002330-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			59	830	497	3	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0002330-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			589	489	525	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29554278	29554278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002330-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			942	499	390	2	ENST00000358273.4:c.2294G>A	p.Arg765His	p.R765H	ENST00000358273	NM_001042492.2	765	cGc/cAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175354	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTA	TCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTA	-			P-0002330-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	361	364	0	ENST00000257430.4:c.4064_4128del	p.Ser1355CysfsTer9	p.S1355Cfs*9	ENST00000257430	NM_000038.5	1355	TCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTAt/t																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49030478	49030479	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002330-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	339	340	0	ENST00000267163.4:c.1959dupA	p.Val654SerfsTer14	p.V654Sfs*14	ENST00000267163	NM_000321.2	651	-/A																																												NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009325-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			450	110	180	0	ENST00000346208.3:c.1300dup	p.His434ProfsTer73	p.H434Pfs*73	ENST00000346208		433	cac/caCc																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45371745	45371745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009325-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			978	53	504	0	ENST00000262160.6:c.1246A>G	p.Met416Val	p.M416V	ENST00000262160	NM_005901.5	416	Atg/Gtg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151875049	151875056	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCTTGA	GCTCTTGA	-			P-0009325-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			609	108	235	0	ENST00000262189.6:c.7482_7489del	p.Ser2494ArgfsTer28	p.S2494Rfs*28	ENST00000262189	NM_170606.2	2494	agTCAAGAGCgc/aggc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	350	387	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	138	689	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149460516	149460516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	31	411	2	ENST00000286301.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000286301	NM_005211.3	41	Cga/Tga																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45008529	45008529	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	245	515	1	ENST00000558401.1:c.349C>T	p.Arg117Ter	p.R117*	ENST00000558401	NM_004048.2	117	Cga/Tga																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78681708	78681708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	149	495	0	ENST00000306801.3:c.416G>A	p.Arg139His	p.R139H	ENST00000306801	NM_020761.2	139	cGc/cAc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70342421	70342421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	62	630	0	ENST00000374080.3:c.1312C>T	p.Arg438Cys	p.R438C	ENST00000374080		438	Cgc/Tgc																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89448592	89448592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	169	542	0	ENST00000336596.2:c.1556C>T	p.Thr519Met	p.T519M	ENST00000336596	NM_005233.5	519	aCg/aTg																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	176054983	176054983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	278	631	0	ENST00000367669.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000367669	NM_022457.5	357	cGa/cAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	74	259	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	134	396	0	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65544702	65544702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	147	540	0	ENST00000358664.4:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000358664	NM_002382.4	75	cGa/cAa																																												NEWRECORD																																		
SDHD	0	MSKCC	GRCh37	11	111958593	111958593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	51	367	0	ENST00000375549.3:c.65G>A	p.Arg22Gln	p.R22Q	ENST00000375549	NM_003002.3	22	cGa/cAa																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	105	271	0	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																												NEWRECORD																																		
BCL6	604	MSKCC	GRCh37	3	187443345	187443345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	178	378	1	ENST00000232014.4:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000232014	NM_001130845.1	594	cGa/cAa																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55980345	55980345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	191	588	0	ENST00000263923.4:c.746G>T	p.Arg249Ile	p.R249I	ENST00000263923	NM_002253.2	249	aGa/aTa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720870	89720870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	166	247	0	ENST00000371953.3:c.1021T>G	p.Phe341Val	p.F341V	ENST00000371953	NM_000314.4	341	Ttt/Gtt																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108143551	108143551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201780199		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	196	494	0	ENST00000278616.4:c.3256C>T	p.Arg1086Cys	p.R1086C	ENST00000278616	NM_000051.3	1086	Cgc/Tgc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15276250	15276250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	122	548	1	ENST00000263388.2:c.5744G>A	p.Arg1915His	p.R1915H	ENST00000263388	NM_000435.2	1915	cGc/cAc																																												NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	159	485	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36171607	36171607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	119	198	0	ENST00000300305.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000300305		320	Cga/Tga																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	151	639	0	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857197	9857197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	215	811	2	ENST00000330684.3:c.4204C>T	p.Arg1402Trp	p.R1402W	ENST00000330684	NM_001134407.1	1402	Cgg/Tgg																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20483060	20483060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	180	457	0	ENST00000346618.3:c.793G>A	p.Glu265Lys	p.E265K	ENST00000346618	NM_001949.4	265	Gag/Aag																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88683246	88683246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	96	381	0	ENST00000372037.3:c.1456C>T	p.Arg486Trp	p.R486W	ENST00000372037	NM_004329.2	486	Cgg/Tgg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	294	952	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174802	112174802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201830995		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	153	355	0	ENST00000257430.4:c.3511C>T	p.Arg1171Cys	p.R1171C	ENST00000257430	NM_000038.5	1171	Cgt/Tgt																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156845901	156845901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	178	752	0	ENST00000524377.1:c.1531G>A	p.Val511Met	p.V511M	ENST00000524377	NM_002529.3	511	Gtg/Atg																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106520000	106520000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	105	470	0	ENST00000359195.3:c.2428C>A	p.Pro810Thr	p.P810T	ENST00000359195	NM_002649.2	810	Cca/Aca																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49432375	49432375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	85	551	2	ENST00000301067.7:c.8764C>T	p.Arg2922Trp	p.R2922W	ENST00000301067	NM_003482.3	2922	Cgg/Tgg																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	25	515	1	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18716344	18716344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	189	432	0	ENST00000266497.5:c.3691G>A	p.Glu1231Lys	p.E1231K	ENST00000266497		1231	Gaa/Aaa																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55133561	55133561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	176	471	1	ENST00000257290.5:c.865G>A	p.Glu289Lys	p.E289K	ENST00000257290	NM_006206.4	289	Gaa/Aaa																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50481162	50481162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	191	496	0	ENST00000394963.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000394963	NM_003076.4	183	cGa/cAa																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	164	301	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76814253	76814253	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	132	685	1	ENST00000373344.5:c.6391C>T	p.Arg2131Ter	p.R2131*	ENST00000373344	NM_000489.3	2131	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	206	536	1	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																												NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133761036	133761036	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1456042173		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	47	637	0	ENST00000318560.5:c.3359C>T	p.Ser1120Leu	p.S1120L	ENST00000318560	NM_005157.4	1120	tCg/tTg																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48027998	48027998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	135	401	1	ENST00000234420.5:c.2876G>A	p.Arg959His	p.R959H	ENST00000234420	NM_000179.2	959	cGc/cAc																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111921737	111921737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	231	569	1	ENST00000393256.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000393256	NM_006538.4	176	Gaa/Aaa																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43805719	43805719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	198	546	0	ENST00000372470.3:c.775G>A	p.Glu259Lys	p.E259K	ENST00000372470	NM_005373.2	259	Gaa/Aaa																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111907683	111907683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146318804		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	269	656	0	ENST00000393256.3:c.457C>T	p.Arg153Trp	p.R153W	ENST00000393256	NM_006538.4	153	Cgg/Tgg																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	326	600	3	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178095	56178095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	211	326	0	ENST00000399503.3:c.3068G>A	p.Arg1023His	p.R1023H	ENST00000399503	NM_005921.1	1023	cGc/cAc																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	179	500	1	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt																																												NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178095836	178095836	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1328262363		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	224	420	0	ENST00000397062.3:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000397062	NM_006164.4	499	Cgg/Tgg																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52439281	52439281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143891879		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	125	362	0	ENST00000460680.1:c.961G>A	p.Ala321Thr	p.A321T	ENST00000460680	NM_004656.3	321	Gca/Aca																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134670615	134670615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	31	748	0	ENST00000398015.3:c.526G>A	p.Ala176Thr	p.A176T	ENST00000398015	NM_004441.4	176	Gct/Act																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	167	589	1	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48951156	48951156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	100	448	0	ENST00000267163.4:c.1318G>A	p.Glu440Lys	p.E440K	ENST00000267163	NM_000321.2	440	Gaa/Aaa																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48953748	48953748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	98	331	0	ENST00000267163.4:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000267163	NM_000321.2	451	Cgc/Tgc																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99442819	99442819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	31	511	0	ENST00000268035.6:c.1216C>T	p.Arg406Cys	p.R406C	ENST00000268035	NM_000875.3	406	Cgc/Tgc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15971393	15971393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	170	462	0	ENST00000268712.3:c.4556C>T	p.Ser1519Leu	p.S1519L	ENST00000268712	NM_006311.3	1519	tCg/tTg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29543740	29543740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	129	414	1	ENST00000389048.3:c.1423C>T	p.Pro475Ser	p.P475S	ENST00000389048	NM_004304.4	475	Cct/Tct																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	438026	438026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	223	462	0	ENST00000399788.2:c.1943G>A	p.Arg648Gln	p.R648Q	ENST00000399788	NM_001042603.1	648	cGa/cAa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49443758	49443758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	188	685	1	ENST00000301067.7:c.3613G>A	p.Val1205Ile	p.V1205I	ENST00000301067	NM_003482.3	1205	Gtt/Att																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913023	32913023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	317	859	0	ENST00000380152.3:c.4531G>A	p.Glu1511Lys	p.E1511K	ENST00000380152		1511	Gaa/Aaa																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30142885	30142885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	129	321	0	ENST00000389048.3:c.641G>A	p.Arg214His	p.R214H	ENST00000389048	NM_004304.4	214	cGc/cAc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29940455	29940455	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138686378		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	133	408	3	ENST00000389048.3:c.776G>A	p.Arg259His	p.R259H	ENST00000389048	NM_004304.4	259	cGc/cAc																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86645121	86645121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	179	317	1	ENST00000274376.6:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000274376	NM_002890.2	398	cGa/cAa																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86649000	86649000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	147	361	0	ENST00000274376.6:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000274376	NM_002890.2	427	cGa/cAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	215	564	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729604	41729604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	77	766	1	ENST00000242208.4:c.925C>T	p.Arg309Trp	p.R309W	ENST00000242208	NM_002192.2	309	Cgg/Tgg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	198	531	2	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	177	539	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577077	7577077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	172	539	0	ENST00000269305.4:c.861G>T	p.Glu287Asp	p.E287D	ENST00000269305	NM_001126112.2	287	gaG/gaT																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119169179	119169179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150811339		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	35	380	0	ENST00000264033.4:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000264033	NM_005188.3	788	cGa/cAa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42041074	42041074	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	84	756	0	ENST00000219905.7:c.5452C>T	p.Arg1818Ter	p.R1818*	ENST00000219905	NM_001164273.1	1818	Cga/Tga																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	126	481	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41765694	41765694	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61737385		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	117	557	1	ENST00000301178.4:c.2570C>T	p.Ala857Val	p.A857V	ENST00000301178	NM_021913.4	857	gCg/gTg																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100922293	100922293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149186732		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	46	615	0	ENST00000325455.5:c.2219G>A	p.Arg740Gln	p.R740Q	ENST00000325455	NM_001202474.3	740	cGa/cAa																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220439839	220439839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	220	780	0	ENST00000243786.2:c.692G>A	p.Arg231Gln	p.R231Q	ENST00000243786	NM_002191.3	231	cGa/cAa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187517847	187517847	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202133523		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	136	544	1	ENST00000441802.2:c.12847G>A	p.Glu4283Lys	p.E4283K	ENST00000441802	NM_005245.3	4283	Gaa/Aaa																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37061907	37061907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	140	465	0	ENST00000231790.2:c.991G>A	p.Glu331Lys	p.E331K	ENST00000231790	NM_000249.3	331	Gag/Aag																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70344077	70344077	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	38	881	0	ENST00000374080.3:c.1813C>T	p.Arg605Ter	p.R605*	ENST00000374080		605	Cga/Tga																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150004247	150004247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	199	632	3	ENST00000253339.5:c.1978C>T	p.Arg660Cys	p.R660C	ENST00000253339		660	Cgt/Tgt																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156844404	156844404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	27	912	2	ENST00000524377.1:c.1237G>A	p.Glu413Lys	p.E413K	ENST00000524377	NM_002529.3	413	Gaa/Aaa																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	208	551	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3842041	3842041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	241	500	0	ENST00000262367.5:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000262367	NM_004380.2	424	cGa/cAa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29562982	29562982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	255	686	0	ENST00000358273.4:c.3917G>A	p.Arg1306Gln	p.R1306Q	ENST00000358273	NM_001042492.2	1306	cGa/cAa																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81336625	81336625	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	154	522	0	ENST00000222390.5:c.1597C>T	p.Arg533Ter	p.R533*	ENST00000222390	NM_000601.4	533	Cga/Tga																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434090	49434090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	20	295	0	ENST00000301067.7:c.7463C>T	p.Ser2488Leu	p.S2488L	ENST00000301067	NM_003482.3	2488	tCg/tTg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152055755	152055755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	154	504	0	ENST00000262189.6:c.167G>A	p.Arg56Gln	p.R56Q	ENST00000262189	NM_170606.2	56	cGa/cAa																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101910054	101910054	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	110	418	0	ENST00000374994.4:c.1374G>A	p.Trp458Ter	p.W458*	ENST00000374994	NM_004612.2	458	tgG/tgA																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143130163	143130163	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	150	414	0	ENST00000262992.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000262992	NM_001101669.1	285	Gaa/Taa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176687122	176687122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	208	541	1	ENST00000439151.2:c.5099G>A	p.Arg1700Gln	p.R1700Q	ENST00000439151	NM_022455.4	1700	cGa/cAa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28891687	28891687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	137	677	1	ENST00000282397.4:c.3334C>T	p.Arg1112Cys	p.R1112C	ENST00000282397	NM_002019.4	1112	Cgc/Tgc																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66231757	66231757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	19	437	0	ENST00000273854.3:c.1943G>T	p.Arg648Ile	p.R648I	ENST00000273854	NM_004439.5	648	aGa/aTa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	240	651	1	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542861	187542861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	169	392	0	ENST00000441802.2:c.4879C>T	p.Arg1627Ter	p.R1627*	ENST00000441802	NM_005245.3	1627	Cga/Tga																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29012441	29012441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55974987		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	73	456	0	ENST00000282397.4:c.430G>A	p.Glu144Lys	p.E144K	ENST00000282397	NM_002019.4	144	Gaa/Aaa																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94224031	94224031	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116679717		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	138	499	0	ENST00000323929.3:c.121G>A	p.Asp41Asn	p.D41N	ENST00000323929	NM_005591.3	41	Gat/Aat																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40944562	40944562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	101	302	0	ENST00000373198.4:c.1940C>T	p.Ser647Leu	p.S647L	ENST00000373198	NM_133170.3	647	tCg/tTg																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111881467	111881467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	152	436	1	ENST00000393256.3:c.145G>A	p.Gly49Arg	p.G49R	ENST00000393256	NM_006538.4	49	Gga/Aga																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157405902	157405902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	181	454	2	ENST00000346085.5:c.2144C>T	p.Pro715Leu	p.P715L	ENST00000346085	NM_020732.3	715	cCg/cTg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47098949	47098949	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	136	329	2	ENST00000409792.3:c.6325C>T	p.Arg2109Ter	p.R2109*	ENST00000409792	NM_014159.6	2109	Cga/Tga																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9560970	9560970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	167	485	0	ENST00000353224.5:c.812C>T	p.Ser271Leu	p.S271L	ENST00000353224	NM_177990.2	271	tCg/tTg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68835623	68835623	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35606263		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	224	615	3	ENST00000261769.5:c.214G>A	p.Asp72Asn	p.D72N	ENST00000261769	NM_004360.3	72	Gac/Aac																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47028820	47028820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	130	654	0	ENST00000329236.7:c.124C>T	p.Arg42Cys	p.R42C	ENST00000329236	NM_001204466.1	42	Cgt/Tgt																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32168682	32168682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	190	538	2	ENST00000375023.3:c.4241C>T	p.Ala1414Val	p.A1414V	ENST00000375023	NM_004557.3	1414	gCg/gTg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89457251	89457252	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	126	364	0	ENST00000336596.2:c.1738dup	p.Arg580LysfsTer19	p.R580Kfs*19	ENST00000336596	NM_005233.5	578	gaa/gAaa																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131953827	131953827	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	107	389	1	ENST00000265335.6:c.3230G>A	p.Arg1077Gln	p.R1077Q	ENST00000265335		1077	cGa/cAa																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112015851	112015851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	285	757	1	ENST00000368678.4:c.1090C>T	p.Leu364Phe	p.L364F	ENST00000368678		364	Ctt/Ttt																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67650719	67650719	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	234	633	0	ENST00000264010.4:c.1024C>T	p.Arg342Cys	p.R342C	ENST00000264010	NM_006565.3	342	Cgt/Tgt																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	101	482	3	ENST00000327367.4:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000327367	NM_005902.3	93	cGa/cAa																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56875705	56875705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	270	769	2	ENST00000308159.5:c.2309C>T	p.Ser770Leu	p.S770L	ENST00000308159	NM_014669.4	770	tCg/tTg																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47428244	47428244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	93	518	3	ENST00000377045.4:c.1204G>A	p.Asp402Asn	p.D402N	ENST00000377045	NM_001654.4	402	Gac/Aac																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29585494	29585494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	89	234	1	ENST00000358273.4:c.4306G>A	p.Glu1436Lys	p.E1436K	ENST00000358273	NM_001042492.2	1436	Gaa/Aaa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16256832	16256832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	114	392	0	ENST00000375759.3:c.4097G>A	p.Arg1366Gln	p.R1366Q	ENST00000375759	NM_015001.2	1366	cGa/cAa																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162740098	162740098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	126	281	0	ENST00000367921.3:c.1300C>T	p.Arg434Trp	p.R434W	ENST00000367921	NM_006182.2	434	Cgg/Tgg																																												NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57750454	57750454	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	102	587	1	ENST00000274289.3:c.2014C>T	p.Arg672Ter	p.R672*	ENST00000274289	NM_006622.3	672	Cga/Tga																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10291528	10291528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	213	642	1	ENST00000340748.4:c.151G>A	p.Glu51Lys	p.E51K	ENST00000340748		51	Gaa/Aaa																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2987215	2987215	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	79	337	0	ENST00000396946.4:c.214C>T	p.Arg72Ter	p.R72*	ENST00000396946	NM_032415.4	72	Cga/Tga																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8521544	8521544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	42	271	0	ENST00000356435.5:c.694C>T	p.Arg232Cys	p.R232C	ENST00000356435		232	Cgc/Tgc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55958788	55958788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	172	614	1	ENST00000263923.4:c.3065G>A	p.Arg1022Gln	p.R1022Q	ENST00000263923	NM_002253.2	1022	cGa/cAa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151884866	151884866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	116	471	0	ENST00000262189.6:c.4727C>A	p.Ser1576Tyr	p.S1576Y	ENST00000262189	NM_170606.2	1576	tCt/tAt																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18793432	18793432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187869576		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	37	565	0	ENST00000266497.5:c.4129C>T	p.Arg1377Cys	p.R1377C	ENST00000266497		1377	Cgt/Tgt																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55599263	55599263	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	81	405	0	ENST00000288135.5:c.2389A>G	p.Asn797Asp	p.N797D	ENST00000288135	NM_000222.2	797	Aat/Gat																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99203950	99203950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	30	346	1	ENST00000074304.5:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000074304	NM_001134224.1	938	cGa/cAa																																												NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55136805	55136805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41279521		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	74	436	0	ENST00000257290.5:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000257290	NM_006206.4	376	cGa/cAa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	189	305	1	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46123836	46123837	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	153	230	0	ENST00000334344.6:c.109dupA	p.Ile37AsnfsTer29	p.I37Nfs*29	ENST00000334344	NM_152641.2	34	-/A																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11307755	11307755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	263	583	0	ENST00000361445.4:c.1152G>T	p.Lys384Asn	p.K384N	ENST00000361445	NM_004958.3	384	aaG/aaT																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16255695	16255695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	126	300	0	ENST00000375759.3:c.2960G>A	p.Arg987His	p.R987H	ENST00000375759	NM_015001.2	987	cGc/cAc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16257596	16257596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	125	663	0	ENST00000375759.3:c.4861G>A	p.Glu1621Lys	p.E1621K	ENST00000375759	NM_015001.2	1621	Gaa/Aaa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27022943	27022943	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	24	20	0	ENST00000324856.7:c.49C>A	p.Pro17Thr	p.P17T	ENST00000324856	NM_006015.4	17	Ccg/Acg																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36933176	36933176	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	142	832	2	ENST00000361632.4:c.1941G>T	p.Trp647Cys	p.W647C	ENST00000361632		647	tgG/tgT																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46521581	46521581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	214	598	0	ENST00000262741.5:c.827G>A	p.Arg276His	p.R276H	ENST00000262741	NM_003629.3	276	cGt/cAt																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46543230	46543230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	37	612	0	ENST00000262741.5:c.271G>A	p.Asp91Asn	p.D91N	ENST00000262741	NM_003629.3	91	Gat/Aat																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65313355	65313355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	92	465	0	ENST00000342505.4:c.1759G>A	p.Glu587Lys	p.E587K	ENST00000342505	NM_002227.2	587	Gag/Aag																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115256589	115256589	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	94	392	0	ENST00000369535.4:c.122G>T	p.Arg41Ile	p.R41I	ENST00000369535	NM_002524.4	41	aGa/aTa																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458162	120458162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	77	467	0	ENST00000256646.2:c.7183T>C	p.Ser2395Pro	p.S2395P	ENST00000256646	NM_024408.3	2395	Tca/Cca																																												NEWRECORD																																		
MCL1	0	MSKCC	GRCh37	1	150550850	150550850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	280	381	1	ENST00000369026.2:c.806C>A	p.Ser269Tyr	p.S269Y	ENST00000369026	NM_021960.4	269	tCt/tAt																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155874154	155874154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	251	613	0	ENST00000368323.3:c.377A>G	p.Asp126Gly	p.D126G	ENST00000368323	NM_006912.5	126	gAt/gGt																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155874214	155874214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	135	547	1	ENST00000368323.3:c.317G>A	p.Arg106Gln	p.R106Q	ENST00000368323	NM_006912.5	106	cGa/cAa																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	176050414	176050414	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148950158		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	33	331	0	ENST00000367669.3:c.1151G>A	p.Arg384Gln	p.R384Q	ENST00000367669	NM_022457.5	384	cGa/cAa																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243708810	243708810	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	170	422	0	ENST00000263826.5:c.1251+2T>C		p.X417_splice	ENST00000263826	NM_005465.4	417																																													NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243800999	243800999	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	143	493	0	ENST00000263826.5:c.475T>G	p.Phe159Val	p.F159V	ENST00000263826	NM_005465.4	159	Ttt/Gtt																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16085656	16085656	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201115523		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	256	443	2	ENST00000281043.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000281043	NM_005378.4	278	Gac/Aac																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25965778	25965778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	37	468	0	ENST00000435504.4:c.3428C>A	p.Ser1143Tyr	p.S1143Y	ENST00000435504		1143	tCt/tAt																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25976426	25976426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	332	724	1	ENST00000435504.4:c.1119C>A	p.Phe373Leu	p.F373L	ENST00000435504		373	ttC/ttA																																												NEWRECORD																																		
CENPA	0	MSKCC	GRCh37	2	27015651	27015651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	186	845	2	ENST00000335756.4:c.238C>T	p.Arg80Cys	p.R80C	ENST00000335756	NM_001809.3	80	Cgt/Tgt																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29451864	29451864	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	166	676	0	ENST00000389048.3:c.2701A>G	p.Thr901Ala	p.T901A	ENST00000389048	NM_004304.4	901	Acc/Gcc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29940536	29940536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	123	552	0	ENST00000389048.3:c.695A>G	p.Asn232Ser	p.N232S	ENST00000389048	NM_004304.4	232	aAc/aGc																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47690230	47690230	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	217	516	0	ENST00000233146.2:c.1447G>T	p.Glu483Ter	p.E483*	ENST00000233146	NM_000251.2	483	Gaa/Taa																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61719325	61719325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	92	320	0	ENST00000401558.2:c.1732G>T	p.Asp578Tyr	p.D578Y	ENST00000401558	NM_003400.3	578	Gat/Tat																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61719724	61719724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	167	626	0	ENST00000401558.2:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000401558	NM_003400.3	515	cGa/cAa																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61753593	61753593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	211	488	1	ENST00000401558.2:c.190G>A	p.Asp64Asn	p.D64N	ENST00000401558	NM_003400.3	64	Gac/Aac																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99149873	99149873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	113	422	0	ENST00000074304.5:c.185G>A	p.Arg62Gln	p.R62Q	ENST00000074304	NM_001134224.1	62	cGa/cAa																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99152295	99152295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	26	520	1	ENST00000074304.5:c.374G>T	p.Arg125Ile	p.R125I	ENST00000074304	NM_001134224.1	125	aGa/aTa																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111881416	111881416	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200974474		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	264	518	1	ENST00000393256.3:c.94G>A	p.Ala32Thr	p.A32T	ENST00000393256	NM_006538.4	32	Gcc/Acc																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111907698	111907698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	72	640	1	ENST00000393256.3:c.472G>A	p.Glu158Lys	p.E158K	ENST00000393256	NM_006538.4	158	Gag/Aag																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178096156	178096156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	244	399	1	ENST00000397062.3:c.1175G>A	p.Gly392Asp	p.G392D	ENST00000397062	NM_006164.4	392	gGt/gAt																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190719569	190719569	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	34	326	0	ENST00000441310.2:c.1571T>G	p.Leu524Ter	p.L524*	ENST00000441310	NM_000534.4	524	tTa/tGa																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198257053	198257053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	146	392	0	ENST00000335508.6:c.3889C>T	p.Arg1297Cys	p.R1297C	ENST00000335508	NM_012433.2	1297	Cgt/Tgt																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198274671	198274671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	132	497	0	ENST00000335508.6:c.727G>A	p.Glu243Lys	p.E243K	ENST00000335508	NM_012433.2	243	Gag/Aag																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202137627	202137627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	197	593	1	ENST00000358485.4:c.734G>A	p.Ser245Asn	p.S245N	ENST00000358485	NM_001080125.1	245	aGc/aAc																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202151289	202151289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	211	671	0	ENST00000358485.4:c.1589G>T	p.Arg530Ile	p.R530I	ENST00000358485	NM_001080125.1	530	aGa/aTa																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204735593	204735593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	17	284	0	ENST00000302823.3:c.394G>A	p.Glu132Lys	p.E132K	ENST00000302823	NM_005214.4	132	Gag/Aag																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248574	212248574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	50	625	0	ENST00000342788.4:c.3693G>T	p.Glu1231Asp	p.E1231D	ENST00000342788	NM_005235.2	1231	gaG/gaT																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251595	212251595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	113	448	1	ENST00000342788.4:c.3464G>A	p.Arg1155Gln	p.R1155Q	ENST00000342788	NM_005235.2	1155	cGa/cAa																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225376182	225376182	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	248	666	1	ENST00000264414.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000264414	NM_003590.4	258	Gaa/Taa																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662752	227662752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	176	509	0	ENST00000305123.5:c.703G>A	p.Glu235Lys	p.E235K	ENST00000305123	NM_005544.2	235	Gag/Aag																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12650799	12650799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	160	439	1	ENST00000251849.4:c.356C>T	p.Ala119Val	p.A119V	ENST00000251849	NM_002880.3	119	gCg/gTg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47125724	47125724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	210	510	1	ENST00000409792.3:c.5546C>T	p.Ser1849Leu	p.S1849L	ENST00000409792	NM_014159.6	1849	tCg/tTg																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49397669	49397669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	209	509	0	ENST00000418115.1:c.555G>T	p.Lys185Asn	p.K185N	ENST00000418115	NM_001664.2	185	aaG/aaT																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49940714	49940714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	285	708	0	ENST00000296474.3:c.329G>A	p.Gly110Glu	p.G110E	ENST00000296474	NM_002447.2	110	gGa/gAa																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72873637	72873637	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	160	455	0	ENST00000325599.8:c.665A>C	p.Lys222Thr	p.K222T	ENST00000325599	NM_018130.2	222	aAa/aCa																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119582445	119582445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	29	184	0	ENST00000316626.5:c.956G>A	p.Arg319Gln	p.R319Q	ENST00000316626		319	cGa/cAa																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134884903	134884903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	128	673	0	ENST00000398015.3:c.1679C>A	p.Ser560Tyr	p.S560Y	ENST00000398015	NM_004441.4	560	tCt/tAt																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138453531	138453531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	160	544	0	ENST00000289153.2:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000289153	NM_006219.2	306	cGa/cAa																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142168369	142168369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	205	430	4	ENST00000350721.4:c.7837C>T	p.Pro2613Ser	p.P2613S	ENST00000350721	NM_001184.3	2613	Ccg/Tcg																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142180803	142180803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	218	542	0	ENST00000350721.4:c.7171A>G	p.Thr2391Ala	p.T2391A	ENST00000350721	NM_001184.3	2391	Acc/Gcc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142226948	142226948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	115	315	0	ENST00000350721.4:c.4856C>T	p.Ser1619Phe	p.S1619F	ENST00000350721	NM_001184.3	1619	tCt/tTt																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142234346	142234346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	154	316	0	ENST00000350721.4:c.4394C>A	p.Ser1465Tyr	p.S1465Y	ENST00000350721	NM_001184.3	1465	tCt/tAt																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142257327	142257327	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	121	346	0	ENST00000350721.4:c.3722A>G	p.Asn1241Ser	p.N1241S	ENST00000350721	NM_001184.3	1241	aAc/aGc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142278168	142278168	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	125	433	0	ENST00000350721.4:c.1657T>C	p.Ser553Pro	p.S553P	ENST00000350721	NM_001184.3	553	Tct/Cct																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	229	636	0	ENST00000263967.3:c.344G>A	p.Arg115Gln	p.R115Q	ENST00000263967	NM_006218.2	115	cGa/cAa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936068	178936068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	77	161	0	ENST00000263967.3:c.1610G>A	p.Arg537Gln	p.R537Q	ENST00000263967	NM_006218.2	537	cGa/cAa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178951934	178951934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	71	450	0	ENST00000263967.3:c.2989C>A	p.Leu997Ile	p.L997I	ENST00000263967	NM_006218.2	997	Ctc/Atc																																												NEWRECORD																																		
SOX2	0	MSKCC	GRCh37	3	181430786	181430786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	183	507	1	ENST00000325404.1:c.638C>T	p.Ser213Leu	p.S213L	ENST00000325404	NM_003106.3	213	tCg/tTg																																												NEWRECORD																																		
DCUN1D1	0	MSKCC	GRCh37	3	182683508	182683508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	59	339	0	ENST00000292782.4:c.37C>T	p.Arg13Cys	p.R13C	ENST00000292782	NM_020640.2	13	Cgt/Tgt																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189582038	189582038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	53	557	0	ENST00000264731.3:c.597G>T	p.Lys199Asn	p.K199N	ENST00000264731	NM_003722.4	199	aaG/aaT																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55133617	55133617	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	29	414	0	ENST00000257290.5:c.921T>G	p.Ile307Met	p.I307M	ENST00000257290	NM_006206.4	307	atT/atG																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593663	55593663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	121	423	0	ENST00000288135.5:c.1729C>T	p.Pro577Ser	p.P577S	ENST00000288135	NM_000222.2	577	Cct/Tct																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55602711	55602711	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	21	535	0	ENST00000288135.5:c.2532T>G	p.Cys844Trp	p.C844W	ENST00000288135	NM_000222.2	844	tgT/tgG																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55958809	55958809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	168	591	0	ENST00000263923.4:c.3044G>A	p.Gly1015Asp	p.G1015D	ENST00000263923	NM_002253.2	1015	gGc/gAc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55968156	55968156	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	196	580	4	ENST00000263923.4:c.2174G>A	p.Arg725His	p.R725H	ENST00000263923	NM_002253.2	725	cGc/cAc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55968535	55968535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	96	460	0	ENST00000263923.4:c.2128G>T	p.Asp710Tyr	p.D710Y	ENST00000263923	NM_002253.2	710	Gac/Tac																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55972907	55972907	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	102	500	0	ENST00000263923.4:c.1483A>C	p.Asn495His	p.N495H	ENST00000263923	NM_002253.2	495	Aat/Cat																																												NEWRECORD																																		
FAM175A	0	MSKCC	GRCh37	4	84388682	84388682	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	108	477	0	ENST00000321945.7:c.606T>G	p.Phe202Leu	p.F202L	ENST00000321945	NM_139076.2	202	ttT/ttG																																												NEWRECORD																																		
FAM175A	0	MSKCC	GRCh37	4	84403359	84403359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	206	643	0	ENST00000321945.7:c.126G>T	p.Lys42Asn	p.K42N	ENST00000321945	NM_139076.2	42	aaG/aaT																																												NEWRECORD																																		
EIF4E	0	MSKCC	GRCh37	4	99812471	99812471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	145	433	0	ENST00000280892.6:c.198G>T	p.Trp66Cys	p.W66C	ENST00000280892	NM_001130678.1	66	tgG/tgT																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106155145	106155145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	236	569	0	ENST00000380013.4:c.46C>T	p.Pro16Ser	p.P16S	ENST00000380013	NM_001127208.2	16	Cca/Tca																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106158304	106158304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	194	561	0	ENST00000380013.4:c.3205A>G	p.Thr1069Ala	p.T1069A	ENST00000380013	NM_001127208.2	1069	Acc/Gcc																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106193889	106193889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	150	455	1	ENST00000380013.4:c.4351C>T	p.Arg1451Trp	p.R1451W	ENST00000380013	NM_001127208.2	1451	Cgg/Tgg																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106197281	106197281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	95	291	0	ENST00000380013.4:c.5614C>A	p.Leu1872Ile	p.L1872I	ENST00000380013	NM_001127208.2	1872	Ctc/Atc																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	142950045	142950045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	140	450	0	ENST00000262992.4:c.2665G>A	p.Val889Ile	p.V889I	ENST00000262992	NM_001101669.1	889	Gta/Ata																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143007335	143007335	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	165	389	0	ENST00000262992.4:c.2449A>C	p.Lys817Gln	p.K817Q	ENST00000262992	NM_001101669.1	817	Aaa/Caa																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143350325	143350325	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	90	222	0	ENST00000262992.4:c.136+1G>A		p.X46_splice	ENST00000262992	NM_001101669.1	46																																													NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187517733	187517733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	91	239	1	ENST00000441802.2:c.12961G>A	p.Asp4321Asn	p.D4321N	ENST00000441802	NM_005245.3	4321	Gac/Aac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187521385	187521385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	113	461	0	ENST00000441802.2:c.11770C>T	p.Arg3924Cys	p.R3924C	ENST00000441802	NM_005245.3	3924	Cgc/Tgc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187554954	187554954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	72	498	0	ENST00000441802.2:c.4207G>A	p.Asp1403Asn	p.D1403N	ENST00000441802	NM_005245.3	1403	Gat/Aat																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187627734	187627734	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	53	680	0	ENST00000441802.2:c.3248A>C	p.Lys1083Thr	p.K1083T	ENST00000441802	NM_005245.3	1083	aAa/aCa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187629400	187629400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	29	531	2	ENST00000441802.2:c.1582G>A	p.Glu528Lys	p.E528K	ENST00000441802	NM_005245.3	528	Gaa/Aaa																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294403	1294403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	77	343	0	ENST00000310581.5:c.598G>A	p.Glu200Lys	p.E200K	ENST00000310581	NM_198253.2	200	Gaa/Aaa																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38945707	38945707	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	187	495	0	ENST00000357387.3:c.4519A>G	p.Thr1507Ala	p.T1507A	ENST00000357387	NM_152756.3	1507	Aca/Gca																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38945765	38945765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	155	419	0	ENST00000357387.3:c.4461G>A	p.Met1487Ile	p.M1487I	ENST00000357387	NM_152756.3	1487	atG/atA																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38958789	38958789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	158	457	2	ENST00000357387.3:c.2323G>A	p.Asp775Asn	p.D775N	ENST00000357387	NM_152756.3	775	Gat/Aat																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56183210	56183210	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	50	238	0	ENST00000399503.3:c.4120A>C	p.Asn1374His	p.N1374H	ENST00000399503	NM_005921.1	1374	Aat/Cat																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589546	67589546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	83	260	0	ENST00000274335.5:c.1309G>C	p.Val437Leu	p.V437L	ENST00000274335		437	Gtc/Ctc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112128185	112128185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	178	537	3	ENST00000257430.4:c.688C>T	p.Arg230Cys	p.R230C	ENST00000257430	NM_000038.5	230	Cgt/Tgt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112154724	112154724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	81	338	1	ENST00000257430.4:c.995G>A	p.Arg332Gln	p.R332Q	ENST00000257430	NM_000038.5	332	cGa/cAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173522	112173522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	162	382	0	ENST00000257430.4:c.2231C>T	p.Ser744Phe	p.S744F	ENST00000257430	NM_000038.5	744	tCt/tTt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175764	112175764	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	122	321	0	ENST00000257430.4:c.4473T>G	p.Phe1491Leu	p.F1491L	ENST00000257430	NM_000038.5	1491	ttT/ttG																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175799	112175799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	109	298	0	ENST00000257430.4:c.4508C>A	p.Ser1503Ter	p.S1503*	ENST00000257430	NM_000038.5	1503	tCa/tAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176890	112176890	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	150	471	0	ENST00000257430.4:c.5599T>G	p.Phe1867Val	p.F1867V	ENST00000257430	NM_000038.5	1867	Ttt/Gtt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176960	112176960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	92	410	0	ENST00000257430.4:c.5669C>T	p.Ser1890Leu	p.S1890L	ENST00000257430	NM_000038.5	1890	tCa/tTa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177359	112177359	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	95	342	0	ENST00000257430.4:c.6068G>T	p.Arg2023Ile	p.R2023I	ENST00000257430	NM_000038.5	2023	aGa/aTa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112179816	112179816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	51	245	0	ENST00000257430.4:c.8525C>A	p.Ser2842Tyr	p.S2842Y	ENST00000257430	NM_000038.5	2842	tCt/tAt																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131893077	131893077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	267	643	1	ENST00000265335.6:c.61G>T	p.Asp21Tyr	p.D21Y	ENST00000265335		21	Gat/Tat																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131944836	131944836	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	71	232	0	ENST00000265335.6:c.2857A>G	p.Asn953Asp	p.N953D	ENST00000265335		953	Aat/Gat																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131951755	131951755	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	129	391	0	ENST00000265335.6:c.3097G>T	p.Glu1033Ter	p.E1033*	ENST00000265335		1033	Gaa/Taa																																												NEWRECORD																																		
NPM1	0	MSKCC	GRCh37	5	170819954	170819954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	116	448	1	ENST00000296930.5:c.496G>A	p.Asp166Asn	p.D166N	ENST00000296930	NM_002520.6	166	Gat/Aat																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176562984	176562984	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	153	394	0	ENST00000439151.2:c.880G>T	p.Glu294Ter	p.E294*	ENST00000439151	NM_022455.4	294	Gaa/Taa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637466	176637466	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	120	323	0	ENST00000439151.2:c.2066T>G	p.Phe689Cys	p.F689C	ENST00000439151	NM_022455.4	689	tTt/tGt																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176720928	176720928	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	171	473	2	ENST00000439151.2:c.6559C>T	p.Arg2187Ter	p.R2187*	ENST00000439151	NM_022455.4	2187	Cga/Tga																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176721046	176721046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	165	391	0	ENST00000439151.2:c.6677T>C	p.Val2226Ala	p.V2226A	ENST00000439151	NM_022455.4	2226	gTa/gCa																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180048881	180048881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	98	416	1	ENST00000261937.6:c.1681G>A	p.Glu561Lys	p.E561K	ENST00000261937	NM_182925.4	561	Gaa/Aaa																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	397142	397142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	22	553	1	ENST00000380956.4:c.527G>A	p.Arg176Gln	p.R176Q	ENST00000380956	NM_001195286.1	176	cGa/cAa																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	397219	397219	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143144957		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	78	511	1	ENST00000380956.4:c.604G>A	p.Gly202Ser	p.G202S	ENST00000380956	NM_001195286.1	202	Ggc/Agc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32164810	32164810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	157	364	0	ENST00000375023.3:c.5092A>G	p.Thr1698Ala	p.T1698A	ENST00000375023	NM_004557.3	1698	Aca/Gca																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32168933	32168933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	122	709	0	ENST00000375023.3:c.4100C>T	p.Thr1367Met	p.T1367M	ENST00000375023	NM_004557.3	1367	aCg/aTg																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93964502	93964502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	214	642	0	ENST00000369303.4:c.2395C>A	p.Pro799Thr	p.P799T	ENST00000369303	NM_004440.3	799	Cca/Aca																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94120374	94120374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	203	777	0	ENST00000369303.4:c.677C>A	p.Ser226Tyr	p.S226Y	ENST00000369303	NM_004440.3	226	tCt/tAt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117630053	117630053	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	106	589	0	ENST00000368508.3:c.6473G>C	p.Gly2158Ala	p.G2158A	ENST00000368508	NM_002944.2	2158	gGt/gCt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117662676	117662676	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	34	542	0	ENST00000368508.3:c.4789A>G	p.Ile1597Val	p.I1597V	ENST00000368508	NM_002944.2	1597	Atc/Gtc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117681075	117681075	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	107	548	0	ENST00000368508.3:c.3545G>T	p.Arg1182Ile	p.R1182I	ENST00000368508	NM_002944.2	1182	aGa/aTa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117687371	117687371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	182	525	1	ENST00000368508.3:c.2680C>T	p.Arg894Trp	p.R894W	ENST00000368508	NM_002944.2	894	Cgg/Tgg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117687431	117687431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	124	415	0	ENST00000368508.3:c.2620G>T	p.Glu874Ter	p.E874*	ENST00000368508	NM_002944.2	874	Gaa/Taa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117710578	117710578	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142303126		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	99	409	0	ENST00000368508.3:c.1694C>T	p.Ser565Leu	p.S565L	ENST00000368508	NM_002944.2	565	tCg/tTg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117710903	117710903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	165	507	0	ENST00000368508.3:c.1369G>A	p.Asp457Asn	p.D457N	ENST00000368508	NM_002944.2	457	Gac/Aac																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149983059	149983059	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	40	635	0	ENST00000253339.5:c.3199A>C	p.Asn1067His	p.N1067H	ENST00000253339		1067	Aat/Cat																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150001133	150001133	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	204	587	0	ENST00000253339.5:c.2471T>G	p.Phe824Cys	p.F824C	ENST00000253339		824	tTt/tGt																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150001187	150001187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	49	671	0	ENST00000253339.5:c.2417G>A	p.Arg806Gln	p.R806Q	ENST00000253339		806	cGa/cAa																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152201798	152201798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	133	343	0	ENST00000206249.3:c.652G>A	p.Asp218Asn	p.D218N	ENST00000206249	NM_000125.3	218	Gac/Aac																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099755	157099755	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	38	236	0	ENST00000346085.5:c.692A>C	p.Asn231Thr	p.N231T	ENST00000346085	NM_020732.3	231	aAt/aCt																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162394444	162394444	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	113	410	0	ENST00000366898.1:c.624T>G	p.Phe208Leu	p.F208L	ENST00000366898	NM_004562.2	208	ttT/ttG																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162394449	162394449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	107	390	0	ENST00000366898.1:c.619G>A	p.Glu207Lys	p.E207K	ENST00000366898	NM_004562.2	207	Gaa/Aaa																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2974131	2974131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	73	525	0	ENST00000396946.4:c.1474C>T	p.Pro492Ser	p.P492S	ENST00000396946	NM_032415.4	492	Ccc/Tcc																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2979498	2979498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	26	700	0	ENST00000396946.4:c.749C>A	p.Ser250Tyr	p.S250Y	ENST00000396946	NM_032415.4	250	tCt/tAt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55268933	55268933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	168	540	0	ENST00000275493.2:c.2999C>T	p.Ala1000Val	p.A1000V	ENST00000275493	NM_005228.3	1000	gCc/gTc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509441	106509441	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	159	493	2	ENST00000359195.3:c.1435G>T	p.Glu479Ter	p.E479*	ENST00000359195	NM_002649.2	479	Gaa/Taa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106545795	106545795	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	76	363	0	ENST00000359195.3:c.3272T>C	p.Val1091Ala	p.V1091A	ENST00000359195	NM_002649.2	1091	gTt/gCt																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116398647	116398647	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	137	447	0	ENST00000397752.3:c.2237A>G	p.Glu746Gly	p.E746G	ENST00000397752	NM_000245.2	746	gAa/gGa																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116411694	116411694	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	193	364	0	ENST00000397752.3:c.2873G>T	p.Arg958Ile	p.R958I	ENST00000397752	NM_000245.2	958	aGa/aTa																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128846357	128846357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	41	715	0	ENST00000249373.3:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000249373	NM_005631.4	398	cGa/cAa																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148506185	148506185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	128	502	0	ENST00000320356.2:c.2173G>A	p.Glu725Lys	p.E725K	ENST00000320356	NM_004456.4	725	Gaa/Aaa																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148525883	148525883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	210	618	0	ENST00000320356.2:c.574G>A	p.Asp192Asn	p.D192N	ENST00000320356	NM_004456.4	192	Gat/Aat																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151880126	151880126	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	36	551	2	ENST00000262189.6:c.5198C>A	p.Ser1733Ter	p.S1733*	ENST00000262189	NM_170606.2	1733	tCg/tAg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151884835	151884835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	118	454	1	ENST00000262189.6:c.4758C>A	p.Phe1586Leu	p.F1586L	ENST00000262189	NM_170606.2	1586	ttC/ttA																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151891100	151891100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	164	366	0	ENST00000262189.6:c.4654A>G	p.Asn1552Asp	p.N1552D	ENST00000262189	NM_170606.2	1552	Aat/Gat																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151945124	151945124	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	17	193	0	ENST00000262189.6:c.2395A>C	p.Asn799His	p.N799H	ENST00000262189	NM_170606.2	799	Aat/Cat																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152009026	152009026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	105	345	0	ENST00000262189.6:c.596G>A	p.Arg199Gln	p.R199Q	ENST00000262189	NM_170606.2	199	cGa/cAa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152012244	152012244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	327	581	2	ENST00000262189.6:c.569G>A	p.Arg190Gln	p.R190Q	ENST00000262189	NM_170606.2	190	cGa/cAa																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152346094	152346094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	247	828	0	ENST00000359321.1:c.476G>A	p.Arg159His	p.R159H	ENST00000359321	NM_005431.1	159	cGc/cAc																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117864824	117864824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	230	757	1	ENST00000297338.2:c.1285G>A	p.Asp429Asn	p.D429N	ENST00000297338	NM_006265.2	429	Gac/Aac																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5054768	5054768	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	199	480	2	ENST00000381652.3:c.820G>T	p.Glu274Ter	p.E274*	ENST00000381652	NM_004972.3	274	Gaa/Taa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8471055	8471055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	59	444	0	ENST00000356435.5:c.3444G>T	p.Lys1148Asn	p.K1148N	ENST00000356435		1148	aaG/aaT																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8633353	8633353	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	201	579	1	ENST00000356435.5:c.316G>T	p.Glu106Ter	p.E106*	ENST00000356435		106	Gaa/Taa																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	36846870	36846870	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	123	572	0	ENST00000358127.4:c.1069T>G	p.Ser357Ala	p.S357A	ENST00000358127	NM_001280556.1	357	Tcc/Gcc																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	37015151	37015151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	148	513	0	ENST00000358127.4:c.253G>A	p.Gly85Arg	p.G85R	ENST00000358127	NM_001280556.1	85	Gga/Aga																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80336402	80336402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	97	418	0	ENST00000286548.4:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000286548	NM_002072.3	306	cGa/cAa																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80430633	80430633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	16	170	0	ENST00000286548.4:c.375G>T	p.Glu125Asp	p.E125D	ENST00000286548	NM_002072.3	125	gaG/gaT																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87285871	87285871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	97	405	0	ENST00000277120.3:c.208G>A	p.Glu70Lys	p.E70K	ENST00000277120		70	Gaa/Aaa																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87570334	87570334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	191	615	0	ENST00000277120.3:c.2074G>A	p.Asp692Asn	p.D692N	ENST00000277120		692	Gat/Aat																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93650096	93650096	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	245	544	0	ENST00000375746.1:c.1647C>A	p.Phe549Leu	p.F549L	ENST00000375746	NM_001174167.1	549	ttC/ttA																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97864002	97864002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	137	429	1	ENST00000289081.3:c.1664G>A	p.Arg555Gln	p.R555Q	ENST00000289081	NM_000136.2	555	cGa/cAa																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101904872	101904872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	171	429	1	ENST00000374994.4:c.860C>T	p.Ser287Phe	p.S287F	ENST00000374994	NM_004612.2	287	tCc/tTc																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249753	110249753	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	182	379	0	ENST00000374672.4:c.922G>T	p.Gly308Trp	p.G308W	ENST00000374672	NM_004235.4	308	Ggg/Tgg																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249824	110249824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	131	300	0	ENST00000374672.4:c.851C>T	p.Ser284Leu	p.S284L	ENST00000374672	NM_004235.4	284	tCg/tTg																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133729465	133729465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	54	346	0	ENST00000318560.5:c.94C>T	p.Pro32Ser	p.P32S	ENST00000318560	NM_005157.4	32	Cca/Tca																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133755919	133755919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	116	502	0	ENST00000318560.5:c.1546C>T	p.Arg516Cys	p.R516C	ENST00000318560	NM_005157.4	516	Cgt/Tgt																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135796804	135796804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	172	491	0	ENST00000298552.3:c.683G>A	p.Arg228Gln	p.R228Q	ENST00000298552	NM_001162426.1	228	cGa/cAa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139401080	139401080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	114	514	0	ENST00000277541.6:c.3913G>A	p.Glu1305Lys	p.E1305K	ENST00000277541	NM_017617.3	1305	Gag/Aag																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63829495	63829495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	27	379	0	ENST00000279873.7:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000279873	NM_032199.2	380	Gaa/Aaa																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63845627	63845627	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	159	272	0	ENST00000279873.7:c.1366G>T	p.Glu456Ter	p.E456*	ENST00000279873	NM_032199.2	456	Gaa/Taa																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63850996	63850996	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	268	389	0	ENST00000279873.7:c.1774G>T	p.Glu592Ter	p.E592*	ENST00000279873	NM_032199.2	592	Gaa/Taa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332909	70332909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	191	720	2	ENST00000373644.4:c.814G>A	p.Glu272Lys	p.E272K	ENST00000373644	NM_030625.2	272	Gag/Aag																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70446128	70446128	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	109	320	1	ENST00000373644.4:c.5068C>T	p.Arg1690Ter	p.R1690*	ENST00000373644	NM_030625.2	1690	Cga/Tga																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88681299	88681299	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	163	391	0	ENST00000372037.3:c.1189C>G	p.Pro397Ala	p.P397A	ENST00000372037	NM_004329.2	397	Ccc/Gcc																																												NEWRECORD																																		
LMO1	0	MSKCC	GRCh37	11	8246188	8246188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	118	584	2	ENST00000335790.3:c.446G>A	p.Gly149Asp	p.G149D	ENST00000335790	NM_002315.2	149	gGc/gAc																																												NEWRECORD																																		
CCND1	0	MSKCC	GRCh37	11	69456245	69456245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	143	360	0	ENST00000227507.2:c.164C>T	p.Ser55Phe	p.S55F	ENST00000227507	NM_053056.2	55	tCc/tTc																																												NEWRECORD																																		
EED	0	MSKCC	GRCh37	11	85979586	85979586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	165	379	1	ENST00000263360.6:c.949G>A	p.Asp317Asn	p.D317N	ENST00000263360	NM_003797.3	317	Gat/Aat																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94192594	94192594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	166	666	2	ENST00000323929.3:c.1480G>A	p.Glu494Lys	p.E494K	ENST00000323929	NM_005591.3	494	Gaa/Aaa																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94201000	94201000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	132	502	1	ENST00000323929.3:c.1077G>T	p.Glu359Asp	p.E359D	ENST00000323929	NM_005591.3	359	gaG/gaT																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100912717	100912717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	457	710	1	ENST00000325455.5:c.2605C>T	p.Arg869Cys	p.R869C	ENST00000325455	NM_001202474.3	869	Cgt/Tgt																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100999180	100999180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	247	632	1	ENST00000325455.5:c.622G>A	p.Ala208Thr	p.A208T	ENST00000325455	NM_001202474.3	208	Gcc/Acc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108186796	108186796	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202206540		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	138	486	0	ENST00000278616.4:c.6154G>A	p.Glu2052Lys	p.E2052K	ENST00000278616	NM_000051.3	2052	Gaa/Aaa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344458	118344458	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	71	270	0	ENST00000534358.1:c.2584C>T	p.Arg862Ter	p.R862*	ENST00000534358	NM_005933.3	862	Cga/Tga																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344751	118344751	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	225	639	0	ENST00000534358.1:c.2877A>C	p.Lys959Asn	p.K959N	ENST00000534358	NM_005933.3	959	aaA/aaC																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118390778	118390778	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	106	433	0	ENST00000534358.1:c.11428C>T	p.Arg3810Trp	p.R3810W	ENST00000534358	NM_005933.3	3810	Cgg/Tgg																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118392634	118392634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	120	438	1	ENST00000534358.1:c.11666G>A	p.Arg3889Gln	p.R3889Q	ENST00000534358	NM_005933.3	3889	cGa/cAa																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119144603	119144603	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	166	445	1	ENST00000264033.4:c.616C>T	p.Arg206Ter	p.R206*	ENST00000264033	NM_005188.3	206	Cga/Tga																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	416162	416162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	219	707	0	ENST00000399788.2:c.4024G>A	p.Glu1342Lys	p.E1342K	ENST00000399788	NM_001042603.1	1342	Gaa/Aaa																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	438057	438057	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	236	504	0	ENST00000399788.2:c.1912G>T	p.Glu638Ter	p.E638*	ENST00000399788	NM_001042603.1	638	Gaa/Taa																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	465663	465663	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	145	646	0	ENST00000399788.2:c.713A>C	p.Lys238Thr	p.K238T	ENST00000399788	NM_001042603.1	238	aAa/aCa																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12038956	12038956	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	246	378	0	ENST00000396373.4:c.1249T>C	p.Phe417Leu	p.F417L	ENST00000396373	NM_001987.4	417	Ttc/Ctc																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12871797	12871797	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	182	215	2	ENST00000228872.4:c.514G>T	p.Glu172Ter	p.E172*	ENST00000228872	NM_004064.3	172	Gaa/Taa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18650568	18650568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	34	442	0	ENST00000266497.5:c.2779C>T	p.Arg927Cys	p.R927C	ENST00000266497		927	Cgt/Tgt																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18793361	18793361	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	168	408	0	ENST00000266497.5:c.4060-2A>C		p.X1354_splice	ENST00000266497		1354																																													NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244518	46244518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	155	498	0	ENST00000334344.6:c.2612A>G	p.Gln871Arg	p.Q871R	ENST00000334344	NM_152641.2	871	cAg/cGg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46287500	46287500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	16	304	0	ENST00000334344.6:c.5359C>T	p.Arg1787Cys	p.R1787C	ENST00000334344	NM_152641.2	1787	Cgc/Tgc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420778	49420778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	145	400	1	ENST00000301067.7:c.14971C>T	p.Arg4991Trp	p.R4991W	ENST00000301067	NM_003482.3	4991	Cgg/Tgg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431669	49431669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	167	552	0	ENST00000301067.7:c.9470G>A	p.Gly3157Glu	p.G3157E	ENST00000301067	NM_003482.3	3157	gGa/gAa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49438655	49438655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	165	428	1	ENST00000301067.7:c.4835G>A	p.Arg1612His	p.R1612H	ENST00000301067	NM_003482.3	1612	cGc/cAc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56487641	56487641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	128	496	0	ENST00000267101.3:c.1574G>A	p.Arg525Gln	p.R525Q	ENST00000267101	NM_001982.3	525	cGa/cAa																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57858512	57858512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	251	949	0	ENST00000228682.2:c.250T>C	p.Ser84Pro	p.S84P	ENST00000228682	NM_005269.2	84	Tcc/Ccc																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57864193	57864193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	188	726	2	ENST00000228682.2:c.1670G>A	p.Arg557His	p.R557H	ENST00000228682	NM_005269.2	557	cGc/cAc																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69233244	69233244	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	283	546	0	ENST00000462284.1:c.1109A>C	p.Lys370Thr	p.K370T	ENST00000462284	NM_002392.5	370	aAa/aCa																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102813333	102813333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	242	543	0	ENST00000307046.8:c.356G>A	p.Arg119His	p.R119H	ENST00000307046	NM_001111285.1	119	cGc/cAc																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111885459	111885459	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	207	647	0	ENST00000341259.2:c.1237-1G>A		p.X413_splice	ENST00000341259	NM_005475.2	413																																													NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112884111	112884111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	90	359	0	ENST00000351677.2:c.46G>A	p.Ala16Thr	p.A16T	ENST00000351677	NM_002834.3	16	Gca/Aca																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115114234	115114234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	24	527	0	ENST00000257566.3:c.983G>T	p.Arg328Ile	p.R328I	ENST00000257566	NM_016569.3	328	aGa/aTa																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115115397	115115397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	181	594	0	ENST00000257566.3:c.929G>A	p.Arg310Gln	p.R310Q	ENST00000257566	NM_016569.3	310	cGa/cAa																																												NEWRECORD																																		
RAB35	0	MSKCC	GRCh37	12	120535064	120535064	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	73	783	0	ENST00000229340.5:c.591G>T	p.Lys197Asn	p.K197N	ENST00000229340	NM_006861.6	197	aaG/aaT																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133225525	133225525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	337	548	1	ENST00000320574.5:c.4139C>T	p.Ser1380Leu	p.S1380L	ENST00000320574	NM_006231.2	1380	tCg/tTg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133249419	133249419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	90	220	0	ENST00000320574.5:c.1480C>T	p.Arg494Trp	p.R494W	ENST00000320574	NM_006231.2	494	Cgg/Tgg																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21549116	21549116	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	179	586	0	ENST00000382592.4:c.3160C>T	p.Arg1054Ter	p.R1054*	ENST00000382592	NM_014572.2	1054	Cga/Tga																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21555686	21555686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	170	584	1	ENST00000382592.4:c.2584C>T	p.Arg862Trp	p.R862W	ENST00000382592	NM_014572.2	862	Cgg/Tgg																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26927898	26927898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	165	382	0	ENST00000381527.3:c.337G>A	p.Ala113Thr	p.A113T	ENST00000381527	NM_001260.1	113	Gct/Act																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28589787	28589787	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	109	647	0	ENST00000241453.7:c.2593T>C	p.Tyr865His	p.Y865H	ENST00000241453	NM_004119.2	865	Tac/Cac																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28602341	28602341	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	62	554	0	ENST00000241453.7:c.2027A>G	p.Asn676Ser	p.N676S	ENST00000241453	NM_004119.2	676	aAc/aGc																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28608456	28608456	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	19	450	0	ENST00000241453.7:c.1686T>G	p.Ile562Met	p.I562M	ENST00000241453	NM_004119.2	562	atT/atG																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28609707	28609707	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	200	619	0	ENST00000241453.7:c.1522A>C	p.Lys508Gln	p.K508Q	ENST00000241453	NM_004119.2	508	Aaa/Caa																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28622458	28622458	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	130	443	0	ENST00000241453.7:c.1159C>T	p.Arg387Ter	p.R387*	ENST00000241453	NM_004119.2	387	Cga/Tga																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28623870	28623870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	28	385	0	ENST00000241453.7:c.784C>A	p.Leu262Ile	p.L262I	ENST00000241453	NM_004119.2	262	Ctt/Att																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28979934	28979934	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	152	498	0	ENST00000282397.4:c.1534A>C	p.Ile512Leu	p.I512L	ENST00000282397	NM_002019.4	512	Ata/Cta																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29002009	29002009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	140	435	0	ENST00000282397.4:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000282397	NM_002019.4	386	Cgt/Tgt																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29041065	29041065	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	114	356	0	ENST00000282397.4:c.363A>C	p.Glu121Asp	p.E121D	ENST00000282397	NM_002019.4	121	gaA/gaC																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32893435	32893435	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	135	283	0	ENST00000380152.3:c.289G>T	p.Glu97Ter	p.E97*	ENST00000380152		97	Gaa/Taa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32906567	32906567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	101	345	0	ENST00000380152.3:c.952A>C	p.Lys318Gln	p.K318Q	ENST00000380152		318	Aaa/Caa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32910726	32910726	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	233	957	0	ENST00000380152.3:c.2234A>C	p.Lys745Thr	p.K745T	ENST00000380152		745	aAa/aCa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32911589	32911589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	87	878	1	ENST00000380152.3:c.3097G>T	p.Asp1033Tyr	p.D1033Y	ENST00000380152		1033	Gat/Tat																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32914280	32914280	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	295	857	0	ENST00000380152.3:c.5788T>G	p.Leu1930Val	p.L1930V	ENST00000380152		1930	Tta/Gta																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32915267	32915267	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	121	868	0	ENST00000380152.3:c.6775A>C	p.Asn2259His	p.N2259H	ENST00000380152		2259	Aat/Cat																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32929156	32929156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	235	811	0	ENST00000380152.3:c.7166G>T	p.Arg2389Ile	p.R2389I	ENST00000380152		2389	aGa/aTa																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48939040	48939040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	21	356	0	ENST00000267163.4:c.872T>C	p.Val291Ala	p.V291A	ENST00000267163	NM_000321.2	291	gTt/gCt																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48951074	48951074	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	142	319	0	ENST00000267163.4:c.1236A>C	p.Lys412Asn	p.K412N	ENST00000267163	NM_000321.2	412	aaA/aaC																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73349353	73349353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	206	543	1	ENST00000377767.4:c.983G>A	p.Arg328Gln	p.R328Q	ENST00000377767	NM_014953.3	328	cGa/cAa																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103504507	103504507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	220	600	0	ENST00000355739.4:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000355739	NM_000123.3	43	cGg/cAg																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103508437	103508437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	19	261	0	ENST00000355739.4:c.503G>T	p.Arg168Ile	p.R168I	ENST00000355739	NM_000123.3	168	aGa/aTa																																												NEWRECORD																																		
RAD51B	0	MSKCC	GRCh37	14	68301872	68301872	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144348796		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	174	469	1	ENST00000487270.1:c.274G>A	p.Glu92Lys	p.E92K	ENST00000487270	NM_133509.3	92	Gaa/Aaa																																												NEWRECORD																																		
RAD51B	0	MSKCC	GRCh37	14	68331814	68331814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	292	587	0	ENST00000487270.1:c.410C>T	p.Ala137Val	p.A137V	ENST00000487270	NM_133509.3	137	gCt/gTt																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95556921	95556921	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	187	429	0	ENST00000343455.3:c.5683C>T	p.Arg1895Ter	p.R1895*	ENST00000343455	NM_177438.2	1895	Cga/Tga																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95572103	95572103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	149	390	1	ENST00000343455.3:c.3005C>T	p.Pro1002Leu	p.P1002L	ENST00000343455	NM_177438.2	1002	cCt/cTt																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95592924	95592924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	20	306	0	ENST00000343455.3:c.896C>T	p.Ser299Leu	p.S299L	ENST00000343455	NM_177438.2	299	tCg/tTg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41989110	41989110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	278	816	1	ENST00000219905.7:c.1902G>T	p.Lys634Asn	p.K634N	ENST00000219905	NM_001164273.1	634	aaG/aaT																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42040934	42040934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	279	845	1	ENST00000219905.7:c.5312C>A	p.Ser1771Tyr	p.S1771Y	ENST00000219905	NM_001164273.1	1771	tCt/tAt																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42040978	42040978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	288	865	2	ENST00000219905.7:c.5356C>T	p.Arg1786Trp	p.R1786W	ENST00000219905	NM_001164273.1	1786	Cgg/Tgg																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66737028	66737028	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	108	492	0	ENST00000307102.5:c.551A>G	p.His184Arg	p.H184R	ENST00000307102	NM_002755.3	184	cAc/cGc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88576178	88576178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	141	455	2	ENST00000360948.2:c.1495G>A	p.Asp499Asn	p.D499N	ENST00000360948	NM_001012338.2	499	Gac/Aac																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88726711	88726711	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	100	406	0	ENST00000360948.2:c.333G>T	p.Lys111Asn	p.K111N	ENST00000360948	NM_001012338.2	111	aaG/aaT																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91303846	91303846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	81	243	0	ENST00000355112.3:c.1243G>T	p.Asp415Tyr	p.D415Y	ENST00000355112	NM_000057.2	415	Gat/Tat																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3794952	3794952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	150	388	0	ENST00000262367.5:c.3925G>A	p.Asp1309Asn	p.D1309N	ENST00000262367	NM_004380.2	1309	Gac/Aac																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3799657	3799657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	169	554	0	ENST00000262367.5:c.3807G>T	p.Lys1269Asn	p.K1269N	ENST00000262367	NM_004380.2	1269	aaG/aaT																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857847	9857847	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	114	704	0	ENST00000330684.3:c.3554A>C	p.Lys1185Thr	p.K1185T	ENST00000330684	NM_001134407.1	1185	aAa/aCa																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9923379	9923379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	53	613	1	ENST00000330684.3:c.1908C>A	p.Phe636Leu	p.F636L	ENST00000330684	NM_001134407.1	636	ttC/ttA																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934603	9934603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	193	563	1	ENST00000330684.3:c.1552C>T	p.Arg518Cys	p.R518C	ENST00000330684	NM_001134407.1	518	Cgt/Tgt																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10274007	10274007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	92	703	1	ENST00000330684.3:c.262G>A	p.Asp88Asn	p.D88N	ENST00000330684	NM_001134407.1	88	Gac/Aac																																												NEWRECORD																																		
SOCS1	0	MSKCC	GRCh37	16	11348918	11348918	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	71	211	0	ENST00000332029.2:c.418A>G	p.Ser140Gly	p.S140G	ENST00000332029	NM_003745.1	140	Agc/Ggc																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23640966	23640966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	89	311	2	ENST00000261584.4:c.2509G>A	p.Glu837Lys	p.E837K	ENST00000261584	NM_024675.3	837	Gaa/Aaa																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23646544	23646544	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	118	333	1	ENST00000261584.4:c.1323A>T	p.Lys441Asn	p.K441N	ENST00000261584	NM_024675.3	441	aaA/aaT																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30129008	30129008	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	202	701	0	ENST00000263025.4:c.758A>C	p.Gln253Pro	p.Q253P	ENST00000263025	NM_002746.2	253	cAg/cCg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72827580	72827580	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	264	876	1	ENST00000268489.5:c.9001G>T	p.Glu3001Ter	p.E3001*	ENST00000268489	NM_006885.3	3001	Gaa/Taa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830535	72830535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	54	910	0	ENST00000268489.5:c.6046G>A	p.Glu2016Lys	p.E2016K	ENST00000268489	NM_006885.3	2016	Gag/Aag																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830640	72830640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	48	1017	1	ENST00000268489.5:c.5941G>A	p.Glu1981Lys	p.E1981K	ENST00000268489	NM_006885.3	1981	Gaa/Aaa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830958	72830958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	153	920	0	ENST00000268489.5:c.5623G>A	p.Glu1875Lys	p.E1875K	ENST00000268489	NM_006885.3	1875	Gaa/Aaa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72832265	72832265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	208	761	1	ENST00000268489.5:c.4316G>A	p.Arg1439Gln	p.R1439Q	ENST00000268489	NM_006885.3	1439	cGa/cAa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72833968	72833968	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	180	683	1	ENST00000268489.5:c.3925C>T	p.Arg1309Ter	p.R1309*	ENST00000268489	NM_006885.3	1309	Cga/Tga																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991586	72991586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	82	862	1	ENST00000268489.5:c.2459G>A	p.Arg820His	p.R820H	ENST00000268489	NM_006885.3	820	cGc/cAc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72992667	72992667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	301	673	0	ENST00000268489.5:c.1378G>A	p.Glu460Lys	p.E460K	ENST00000268489	NM_006885.3	460	Gaa/Aaa																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89348470	89348470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	56	923	3	ENST00000301030.4:c.4480C>T	p.Arg1494Trp	p.R1494W	ENST00000301030	NM_001256183.1	1494	Cgg/Tgg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89350504	89350504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	46	990	0	ENST00000301030.4:c.2446G>A	p.Glu816Lys	p.E816K	ENST00000301030	NM_001256183.1	816	Gaa/Aaa																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89351980	89351980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	125	1021	2	ENST00000301030.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000301030	NM_001256183.1	324	Gaa/Aaa																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89849470	89849470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	83	829	2	ENST00000389301.3:c.1511G>A	p.Arg504His	p.R504H	ENST00000389301	NM_000135.2	504	cGc/cAc																																												NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8108548	8108548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	51	454	0	ENST00000585124.1:c.847C>T	p.Arg283Cys	p.R283C	ENST00000585124	NM_004217.3	283	Cgc/Tgc																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11984764	11984764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	17	264	0	ENST00000353533.5:c.310G>T	p.Asp104Tyr	p.D104Y	ENST00000353533	NM_003010.3	104	Gac/Tac																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12032472	12032472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	139	307	0	ENST00000353533.5:c.908G>A	p.Gly303Asp	p.G303D	ENST00000353533	NM_003010.3	303	gGc/gAc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16049728	16049728	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	276	734	0	ENST00000268712.3:c.1044A>C	p.Glu348Asp	p.E348D	ENST00000268712	NM_006311.3	348	gaA/gaC																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16089913	16089913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	178	385	0	ENST00000268712.3:c.197G>A	p.Arg66Gln	p.R66Q	ENST00000268712	NM_006311.3	66	cGa/cAa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29663454	29663454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	41	379	0	ENST00000358273.4:c.6110C>T	p.Ala2037Val	p.A2037V	ENST00000358273	NM_001042492.2	2037	gCt/gTt																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30325897	30325897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	116	452	1	ENST00000322652.5:c.2095G>A	p.Glu699Lys	p.E699K	ENST00000322652	NM_015355.2	699	Gaa/Aaa																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37650845	37650845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	72	682	0	ENST00000447079.4:c.2317C>T	p.Arg773Cys	p.R773C	ENST00000447079	NM_015083.1	773	Cgt/Tgt																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37657676	37657676	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	170	492	0	ENST00000447079.4:c.2593A>C	p.Ile865Leu	p.I865L	ENST00000447079	NM_015083.1	865	Att/Ctt																																												NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37681051	37681051	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	174	392	0	ENST00000447079.4:c.3220A>G	p.Thr1074Ala	p.T1074A	ENST00000447079	NM_015083.1	1074	Aca/Gca																																												NEWRECORD																																		
STAT5B	0	MSKCC	GRCh37	17	40359594	40359594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	236	778	0	ENST00000293328.3:c.2059C>T	p.Pro687Ser	p.P687S	ENST00000293328	NM_012448.3	687	Ccc/Tcc																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41243774	41243774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	47	512	0	ENST00000357654.3:c.3774G>T	p.Glu1258Asp	p.E1258D	ENST00000357654	NM_007294.3	1258	gaG/gaT																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41244094	41244094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	168	490	0	ENST00000357654.3:c.3454G>A	p.Asp1152Asn	p.D1152N	ENST00000357654	NM_007294.3	1152	Gac/Aac																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41244213	41244213	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	153	461	0	ENST00000357654.3:c.3335A>C	p.Glu1112Ala	p.E1112A	ENST00000357654	NM_007294.3	1112	gAa/gCa																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435240	56435240	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	108	189	0	ENST00000407977.2:c.1897T>C	p.Cys633Arg	p.C633R	ENST00000407977		633	Tgc/Cgc																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58677911	58677911	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	151	559	0	ENST00000305921.3:c.136T>C	p.Ser46Pro	p.S46P	ENST00000305921	NM_003620.3	46	Tct/Cct																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58734023	58734023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	252	690	2	ENST00000305921.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000305921	NM_003620.3	361	Cgt/Tgt																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740704	58740704	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	257	850	0	ENST00000305921.3:c.1609A>G	p.Thr537Ala	p.T537A	ENST00000305921	NM_003620.3	537	Aca/Gca																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740837	58740837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200809297		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	80	855	2	ENST00000305921.3:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000305921	NM_003620.3	581	cGa/cAa																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59861752	59861752	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	149	475	0	ENST00000259008.2:c.1507A>C	p.Lys503Gln	p.K503Q	ENST00000259008	NM_032043.2	503	Aaa/Caa																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63554382	63554382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	339	528	0	ENST00000307078.5:c.357G>T	p.Gln119His	p.Q119H	ENST00000307078	NM_004655.3	119	caG/caT																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78865623	78865623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	143	354	2	ENST00000306801.3:c.2087C>A	p.Ser696Tyr	p.S696Y	ENST00000306801	NM_020761.2	696	tCt/tAt																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	756778	756778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	197	609	0	ENST00000314574.4:c.50G>A	p.Arg17Lys	p.R17K	ENST00000314574	NM_005433.3	17	aGa/aAa																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39570469	39570469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	63	570	0	ENST00000262039.4:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000262039	NM_002647.2	222	cGa/cAa																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45395686	45395686	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200841904		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	144	464	0	ENST00000262160.6:c.448G>A	p.Glu150Lys	p.E150K	ENST00000262160	NM_005901.5	150	Gaa/Aaa																																												NEWRECORD																																		
MALT1	0	MSKCC	GRCh37	18	56348487	56348487	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	416	952	0	ENST00000348428.3:c.295A>C	p.Lys99Gln	p.K99Q	ENST00000348428	NM_006785.3	99	Aaa/Caa																																												NEWRECORD																																		
MALT1	0	MSKCC	GRCh37	18	56377266	56377266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	286	705	1	ENST00000348428.3:c.887G>A	p.Arg296Gln	p.R296Q	ENST00000348428	NM_006785.3	296	cGa/cAa																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7267638	7267638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	26	529	0	ENST00000302850.5:c.370G>A	p.Glu124Lys	p.E124K	ENST00000302850	NM_000208.2	124	Gag/Aag																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10259678	10259678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	93	393	0	ENST00000340748.4:c.2554G>A	p.Glu852Lys	p.E852K	ENST00000340748		852	Gag/Aag																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10291513	10291513	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	149	642	0	ENST00000340748.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000340748		56	Gaa/Taa																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10600369	10600369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	117	696	0	ENST00000171111.5:c.1486G>A	p.Glu496Lys	p.E496K	ENST00000171111	NM_203500.1	496	Gag/Aag																																												NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11144152	11144152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	92	414	0	ENST00000344626.4:c.3733G>A	p.Ala1245Thr	p.A1245T	ENST00000344626	NM_003072.3	1245	Gcc/Acc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15276313	15276313	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	72	393	0	ENST00000263388.2:c.5681A>G	p.Asn1894Ser	p.N1894S	ENST00000263388	NM_000435.2	1894	aAc/aGc																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41748903	41748903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	107	705	0	ENST00000301178.4:c.1428G>T	p.Lys476Asn	p.K476N	ENST00000301178	NM_021913.4	476	aaG/aaT																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9520177	9520177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	155	539	0	ENST00000353224.5:c.2092C>T	p.Pro698Ser	p.P698S	ENST00000353224	NM_177990.2	698	Cca/Tca																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31372585	31372585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	109	565	0	ENST00000328111.2:c.226G>A	p.Gly76Arg	p.G76R	ENST00000328111	NM_006892.3	76	Ggg/Agg																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31374312	31374312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	107	583	0	ENST00000328111.2:c.311G>A	p.Arg104Gln	p.R104Q	ENST00000328111	NM_006892.3	104	cGa/cAa																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31379489	31379489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	139	519	1	ENST00000328111.2:c.896G>A	p.Arg299Gln	p.R299Q	ENST00000328111	NM_006892.3	299	cGa/cAa																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31394052	31394052	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	141	461	0	ENST00000328111.2:c.2339C>T	p.Ser780Leu	p.S780L	ENST00000328111	NM_006892.3	780	tCg/tTg																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39713132	39713132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	25	363	1	ENST00000361337.2:c.538G>T	p.Asp180Tyr	p.D180Y	ENST00000361337	NM_003286.2	180	Gat/Tat																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39728710	39728710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	112	300	0	ENST00000361337.2:c.990G>T	p.Glu330Asp	p.E330D	ENST00000361337	NM_003286.2	330	gaG/gaT																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39741523	39741523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	165	344	0	ENST00000361337.2:c.1410G>T	p.Met470Ile	p.M470I	ENST00000361337	NM_003286.2	470	atG/atT																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40757463	40757463	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	142	505	0	ENST00000373198.4:c.2835T>G	p.His945Gln	p.H945Q	ENST00000373198	NM_133170.3	945	caT/caG																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40827900	40827900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	106	576	0	ENST00000373198.4:c.2528C>A	p.Ser843Tyr	p.S843Y	ENST00000373198	NM_133170.3	843	tCt/tAt																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40944432	40944432	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	183	691	3	ENST00000373198.4:c.2070C>A	p.Tyr690Ter	p.Y690*	ENST00000373198	NM_133170.3	690	taC/taA																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41385152	41385152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	104	561	0	ENST00000373198.4:c.809G>A	p.Arg270His	p.R270H	ENST00000373198	NM_133170.3	270	cGc/cAc																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54948566	54948566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	110	483	0	ENST00000312783.6:c.752G>A	p.Arg251Lys	p.R251K	ENST00000312783	NM_198436.1	251	aGa/aAa																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39762955	39762955	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	45	472	0	ENST00000288319.7:c.881A>C	p.Gln294Pro	p.Q294P	ENST00000288319	NM_182918.3	294	cAg/cCg																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39817414	39817414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	119	494	0	ENST00000288319.7:c.149G>A	p.Arg50His	p.R50H	ENST00000288319	NM_182918.3	50	cGc/cAc																																												NEWRECORD																																		
U2AF1	0	MSKCC	GRCh37	21	44513331	44513331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	147	447	1	ENST00000291552.4:c.604C>T	p.Arg202Cys	p.R202C	ENST00000291552	NM_006758.2	202	Cgt/Tgt																																												NEWRECORD																																		
MAPK1	0	MSKCC	GRCh37	22	22162107	22162107	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	126	354	1	ENST00000215832.6:c.148C>T	p.Arg50Ter	p.R50*	ENST00000215832	NM_002745.4	50	Cga/Tga																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41513352	41513352	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	51	626	1	ENST00000263253.7:c.256C>T	p.Arg86Ter	p.R86*	ENST00000263253	NM_001429.3	86	Cga/Tga																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41562635	41562635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	175	404	0	ENST00000263253.7:c.3839C>T	p.Ala1280Val	p.A1280V	ENST00000263253	NM_001429.3	1280	gCa/gTa																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41574391	41574391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	117	549	2	ENST00000263253.7:c.6676C>T	p.Arg2226Trp	p.R2226W	ENST00000263253	NM_001429.3	2226	Cgg/Tgg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41574404	41574404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	102	527	0	ENST00000263253.7:c.6689A>G	p.His2230Arg	p.H2230R	ENST00000263253	NM_001429.3	2230	cAc/cGc																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39916526	39916526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	195	712	2	ENST00000378444.4:c.4477C>T	p.Arg1493Trp	p.R1493W	ENST00000378444	NM_001123385.1	1493	Cgg/Tgg																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39934252	39934252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	219	792	2	ENST00000378444.4:c.347C>T	p.Ser116Leu	p.S116L	ENST00000378444	NM_001123385.1	116	tCg/tTg																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48652362	48652362	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	141	829	0	ENST00000376670.3:c.1033A>G	p.Asn345Asp	p.N345D	ENST00000376670	NM_002049.3	345	Aat/Gat																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70342639	70342639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	133	736	1	ENST00000374080.3:c.1400G>T	p.Ser467Ile	p.S467I	ENST00000374080		467	aGt/aTt																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76912075	76912075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	322	780	1	ENST00000373344.5:c.4189G>A	p.Glu1397Lys	p.E1397K	ENST00000373344	NM_000489.3	1397	Gaa/Aaa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937393	76937393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	49	521	0	ENST00000373344.5:c.3355G>T	p.Glu1119Ter	p.E1119*	ENST00000373344	NM_000489.3	1119	Gaa/Taa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938028	76938028	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143413618		P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	136	578	0	ENST00000373344.5:c.2720G>A	p.Arg907Gln	p.R907Q	ENST00000373344	NM_000489.3	907	cGa/cAa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938119	76938119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	175	521	1	ENST00000373344.5:c.2629G>A	p.Asp877Asn	p.D877N	ENST00000373344	NM_000489.3	877	Gat/Aat																																												NEWRECORD																																		
XIAP	0	MSKCC	GRCh37	X	123034532	123034532	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	91	283	0	ENST00000355640.3:c.1289C>A	p.Ser430Ter	p.S430*	ENST00000355640		430	tCa/tAa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123159736	123159736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	262	743	2	ENST00000218089.9:c.91G>A	p.Glu31Lys	p.E31K	ENST00000218089	NM_001042749.1	31	Gaa/Aaa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123197867	123197867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	122	625	0	ENST00000218089.9:c.1991A>G	p.Lys664Arg	p.K664R	ENST00000218089	NM_001042749.1	664	aAa/aGa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123200207	123200207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	97	528	0	ENST00000218089.9:c.2186T>G	p.Ile729Ser	p.I729S	ENST00000218089	NM_001042749.1	729	aTt/aGt																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123217306	123217306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	110	641	1	ENST00000218089.9:c.2960C>T	p.Pro987Leu	p.P987L	ENST00000218089	NM_001042749.1	987	cCg/cTg																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123229243	123229243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	146	528	0	ENST00000218089.9:c.3727G>A	p.Glu1243Lys	p.E1243K	ENST00000218089	NM_001042749.1	1243	Gag/Aag																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7979986	7979987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	97	374	0	ENST00000319144.4:c.1350dup	p.Leu451AlafsTer27	p.L451Afs*27	ENST00000319144	NM_001139.2	450	-/G																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157100408	157100409	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGT			P-0012358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	28	86	0	ENST00000346085.5:c.1347_1348insTCG	p.Pro449_Pro450insSer	p.P449_P450insS	ENST00000346085	NM_020732.3	449	ccg/cCGTcg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	83	246	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0008041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	14	392	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0008041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	46	147	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0008041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	46	147	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90958438	90958438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	16	343	0	ENST00000265433.3:c.2000C>G	p.Ser667Cys	p.S667C	ENST00000265433	NM_002485.4	667	tCt/tGt																																												NEWRECORD																																		
EGFL7	0	MSKCC	GRCh37	9	139566538	139566538	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	62	300	0	ENST00000308874.7:c.797C>T	p.Ser266Phe	p.S266F	ENST00000308874		266	tCc/tTc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578419	7578420	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGTCATGTG			P-0008041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	49	247	0	ENST00000269305.4:c.502_510dup	p.His168_Thr170dup	p.H168_T170dup	ENST00000269305	NM_001126112.2	168	-/CACATGACG																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	47	54	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42019392	42019392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	304	480	1	ENST00000219905.7:c.3445G>A	p.Glu1149Lys	p.E1149K	ENST00000219905	NM_001164273.1	1149	Gag/Aag																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52439142	52439175	+	frameshift_variant	Frame_Shift_Del	DEL	GCATAATTGTGATTGTCTAGAAAGGCCGGCAGCC	GCATAATTGTGATTGTCTAGAAAGGCCGGCAGCC	-			P-0010813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	130	168	0	ENST00000460680.1:c.1067_1100del	p.Arg356ProfsTer63	p.R356Pfs*63	ENST00000460680	NM_004656.3	356	cGGCTGCCGGCCTTTCTAGACAATCACAATTATGCc/cc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579441	7579442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	255	312	0	ENST00000269305.4:c.245dup	p.Ala83GlyfsTer66	p.A83Gfs*66	ENST00000269305	NM_001126112.2	82	ccg/ccCg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187521382	187521388	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGAGC	AGCGAGC	-			P-0010813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	102	369	0	ENST00000441802.2:c.11767_11773del	p.Ala3923TrpfsTer3	p.A3923Wfs*3	ENST00000441802	NM_005245.3	3923	GCTCGCTtg/tg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187584585	187584586	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0010813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	123	384	0	ENST00000441802.2:c.3447_3448delinsTT	p.Met1149_Glu1150delinsIleTer	p.M1149_E1150delinsI*	ENST00000441802	NM_005245.3	1149	atGGaa/atTTaa																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134851693	134851693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002118-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	107	364	0	ENST00000398015.3:c.1099C>T	p.Arg367Cys	p.R367C	ENST00000398015	NM_004441.4	367	Cgc/Tgc																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131930650	131930650	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002118-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			771	56	516	1	ENST00000265335.6:c.1883A>T	p.Lys628Met	p.K628M	ENST00000265335		628	aAg/aTg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106099	27106100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002118-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	62	419	0	ENST00000324856.7:c.5715dup	p.Arg1906ThrfsTer8	p.R1906Tfs*8	ENST00000324856	NM_006015.4	1904	gaa/gAaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577558	7577563	+	inframe_deletion	In_Frame_Del	DEL	GGAACT	GGAACT	-			P-0002118-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	39	418	0	ENST00000269305.4:c.718_723delAGTTCC	p.Ser240_Ser241del	p.S240_S241del	ENST00000269305	NM_001126112.2	240	AGTTCC/-																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18650591	18650591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	46	482	0	ENST00000266497.5:c.2802G>T	p.Gln934His	p.Q934H	ENST00000266497		934	caG/caT																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	115	403	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420289	49420289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	54	536	0	ENST00000301067.7:c.15460C>T	p.Arg5154Trp	p.R5154W	ENST00000301067	NM_003482.3	5154	Cgg/Tgg																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56871587	56871587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	51	593	0	ENST00000308159.5:c.1967C>T	p.Pro656Leu	p.P656L	ENST00000308159	NM_014669.4	656	cCg/cTg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	114	494	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0006709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	33	383	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52682418	52682418	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	176	625	1	ENST00000394830.3:c.755T>G	p.Ile252Arg	p.I252R	ENST00000394830	NM_018313.4	252	aTa/aGa																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89349582	89349582	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	88	858	0	ENST00000301030.4:c.3368G>T	p.Ser1123Ile	p.S1123I	ENST00000301030	NM_001256183.1	1123	aGt/aTt																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53228341	53228341	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	21	213	0	ENST00000375401.3:c.2062-1G>A		p.X688_splice	ENST00000375401	NM_004187.3	688																																													NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10191517	10191518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	114	479	0	ENST00000256474.2:c.512dup	p.Pro172AlafsTer2	p.P172Afs*2	ENST00000256474	NM_000551.3	170	-/A																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	70	183	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156981	106156981	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	20	341	0	ENST00000380013.4:c.1882G>T	p.Glu628Ter	p.E628*	ENST00000380013	NM_001127208.2	628	Gag/Tag																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	37002645	37002645	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	23	300	0	ENST00000358127.4:c.604G>T	p.Gly202Cys	p.G202C	ENST00000358127	NM_001280556.1	202	Ggt/Tgt																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112926314	112926314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	38	315	0	ENST00000351677.2:c.1447G>T	p.Gly483Cys	p.G483C	ENST00000351677	NM_002834.3	483	Ggt/Tgt																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103515223	103515223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	50	410	0	ENST00000355739.4:c.1724C>G	p.Ser575Cys	p.S575C	ENST00000355739	NM_000123.3	575	tCt/tGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579492	7579493	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	57	310	0	ENST00000269305.4:c.194dup	p.Met66AsnfsTer83	p.M66Nfs*83	ENST00000269305	NM_001126112.2	65	aga/agGa																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842659	68842660	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACCCCCTGTTGGTGTCTTTAC			P-0008369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	121	520	0	ENST00000261769.5:c.616_617insCCACCCCCTGTTGGTGTCTTTA	p.Ile206ThrfsTer10	p.I206Tfs*10	ENST00000261769	NM_004360.3	199	aca/aCACCCCCTGTTGGTGTCTTTACca																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226549757	226549757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1095	169	283	0	ENST00000366794.5:c.2876C>T	p.Ser959Leu	p.S959L	ENST00000366794	NM_001618.3	959	tCa/tTa																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	130	153	0	ENST00000274335.5:c.1678G>T	p.Asp560Tyr	p.D560Y	ENST00000274335		560	Gac/Tac																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89839769	89839769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	484	385	1	ENST00000389301.3:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000389301	NM_000135.2	642	Gaa/Aaa																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65325858	65325859	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0000345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	288	246	0	ENST00000342505.4:c.1262_1263dupAT	p.Tyr422IlefsTer11	p.Y422Ifs*11	ENST00000342505	NM_002227.2	421	-/AT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579360	7579365	+	inframe_deletion	In_Frame_Del	DEL	GAAACC	GAAACC	-			P-0000345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	231	271	0	ENST00000269305.4:c.322_327delGGTTTC	p.Gly108_Phe109del	p.G108_F109del	ENST00000269305	NM_001126112.2	108	GGTTTC/-																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41553210	41553211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000345-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			903	209	345	0	ENST00000263253.7:c.3300dupT	p.Thr1101TyrfsTer3	p.T1101Yfs*3	ENST00000263253	NM_001429.3	1100	tct/tcTt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	37	205	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	134	147	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	134	147	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	340	639	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	375	461	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	134	147	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72799866	72799866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	101	364	0	ENST00000325599.8:c.1303G>T	p.Ala435Ser	p.A435S	ENST00000325599	NM_018130.2	435	Gca/Tca																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55152105	55152105	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	113	473	0	ENST00000257290.5:c.2537A>T	p.Asp846Val	p.D846V	ENST00000257290	NM_006206.4	846	gAt/gTt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55270256	55270256	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	143	573	0	ENST00000275493.2:c.3209G>C	p.Ser1070Thr	p.S1070T	ENST00000275493	NM_005228.3	1070	aGc/aCc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115118874	115118874	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	115	448	0	ENST00000257566.3:c.467T>A	p.Ile156Lys	p.I156K	ENST00000257566	NM_016569.3	156	aTa/aAa																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49033915	49033915	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	280	588	1	ENST00000267163.4:c.2052C>A	p.Phe684Leu	p.F684L	ENST00000267163	NM_000321.2	684	ttC/ttA																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91358472	91358472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	310	632	0	ENST00000355112.3:c.4217A>G	p.Asn1406Ser	p.N1406S	ENST00000355112	NM_000057.2	1406	aAt/aGt																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15960886	15960886	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	200	409	0	ENST00000268712.3:c.6334C>A	p.His2112Asn	p.H2112N	ENST00000268712	NM_006311.3	2112	Cat/Aat																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16260213	16260214	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	35	215	0	ENST00000375759.3:c.7484dup	p.Thr2496TyrfsTer2	p.T2496Yfs*2	ENST00000375759	NM_015001.2	2493	agc/agCc																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241680480	241680480	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0006734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	258	361	0	ENST00000366560.3:c.267+2T>C		p.X89_splice	ENST00000366560	NM_000143.3	89																																													NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508954	106508954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	152	342	0	ENST00000359195.3:c.948C>G	p.Asp316Glu	p.D316E	ENST00000359195	NM_002649.2	316	gaC/gaG																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45394757	45394757	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	302	557	0	ENST00000262160.6:c.592C>G	p.His198Asp	p.H198D	ENST00000262160	NM_005901.5	198	Cac/Gac																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41306550	41306550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	88	506	0	ENST00000373198.4:c.1109C>T	p.Thr370Met	p.T370M	ENST00000373198	NM_133170.3	370	aCg/aTg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107224	27107225	+	frameshift_variant	Frame_Shift_Ins	INS	CT	CT	GTA			P-0006734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	280	345	0	ENST00000324856.7:c.6835_6836delinsGTA	p.Leu2279ValfsTer106	p.L2279Vfs*106	ENST00000324856	NM_006015.4	2279	CTg/GTAg																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72799584	72799584	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	28	589	0	ENST00000325599.8:c.1585T>A	p.Ser529Thr	p.S529T	ENST00000325599	NM_018130.2	529	Tcc/Acc																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138198297	138198297	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	21	551	2	ENST00000237289.4:c.890A>T	p.Glu297Val	p.E297V	ENST00000237289	NM_001270507.1	297	gAg/gTg																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106526672	106526672	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	19	541	0	ENST00000359195.3:c.2965C>G	p.Pro989Ala	p.P989A	ENST00000359195	NM_002649.2	989	Cct/Gct																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2125821	2125821	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	35	668	0	ENST00000219476.3:c.2567T>A	p.Leu856His	p.L856H	ENST00000219476	NM_000548.3	856	cTc/cAc																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188243	10188244	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	37	617	0	ENST00000256474.2:c.388dup	p.Val130GlyfsTer2	p.V130Gfs*2	ENST00000256474	NM_000551.3	129	ctg/ctGg																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	53	327	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	28	130	1				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16260950	16260950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	29	126	0	ENST00000375759.3:c.8215G>A	p.Val2739Met	p.V2739M	ENST00000375759	NM_015001.2	2739	Gtg/Atg																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453119	140453119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	55	337	0	ENST00000288602.6:c.1816G>T	p.Gly606Trp	p.G606W	ENST00000288602	NM_004333.4	606	Ggg/Tgg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139401005	139401005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	31	370	0	ENST00000277541.6:c.3988C>T	p.Arg1330Cys	p.R1330C	ENST00000277541	NM_017617.3	1330	Cgc/Tgc																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652262	36652263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	31	252	0	ENST00000244741.5:c.387dup	p.Ser130ValfsTer67	p.S130Vfs*67	ENST00000244741	NM_000389.4	128	-/G																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266110	41266110	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	185	491	0	ENST00000349496.5:c.107A>C	p.His36Pro	p.H36P	ENST00000349496	NM_001904.3	36	cAt/cCt																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652033	36652033	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	292	591	1	ENST00000244741.5:c.155A>T	p.Asp52Val	p.D52V	ENST00000244741	NM_000389.4	52	gAc/gTc																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52716327	52716327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	125	491	0	ENST00000322088.6:c.771G>T	p.Trp257Cys	p.W257C	ENST00000322088	NM_014225.5	257	tgG/tgT																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41100999	41100999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	106	405	1	ENST00000373198.4:c.1357C>T	p.Arg453Cys	p.R453C	ENST00000373198	NM_133170.3	453	Cgc/Tgc																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577399	64577400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGCTC			P-0007773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	131	745	0	ENST00000337652.1:c.178_182dup	p.Thr62SerfsTer59	p.T62Sfs*59	ENST00000337652	NM_130803.2	61	ctc/ctGAGCTc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0013043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	93	328	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																												NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835780	68835781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	121	521	0	ENST00000261769.5:c.377dup	p.Pro127AlafsTer41	p.P127Afs*41	ENST00000261769	NM_004360.3	124	cgc/cgCc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	196	500	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	89	418	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162746132	162746132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	65	412	1	ENST00000367921.3:c.2255G>A	p.Arg752His	p.R752H	ENST00000367921	NM_006182.2	752	cGc/cAc																																												NEWRECORD																																		
TCEB1	0	MSKCC	GRCh37	8	74868211	74868211	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	11	105	0	ENST00000284811.8:c.83A>G	p.Glu28Gly	p.E28G	ENST00000284811		28	gAa/gGa																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858493	9858493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	36	469	0	ENST00000330684.3:c.2908C>T	p.Arg970Trp	p.R970W	ENST00000330684	NM_001134407.1	970	Cgg/Tgg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9916143	9916143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	63	415	0	ENST00000330684.3:c.2146G>T	p.Ala716Ser	p.A716S	ENST00000330684	NM_001134407.1	716	Gcc/Tcc																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14042110	14042110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	108	432	0	ENST00000311895.7:c.2657G>A	p.Ser886Asn	p.S886N	ENST00000311895	NM_005236.2	886	aGt/aAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173614	112173615	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	55	446	0	ENST00000257430.4:c.2323_2324del	p.Asn775TyrfsTer12	p.N775Yfs*12	ENST00000257430	NM_000038.5	775	AAt/t																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175646	112175647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0007222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	93	538	0	ENST00000257430.4:c.4356_4357dup	p.Pro1453HisfsTer21	p.P1453Hfs*21	ENST00000257430	NM_000038.5	1452	gta/gtACa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	33	356	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	106	499	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	134	692	1	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106099	27106100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	142	522	0	ENST00000324856.7:c.5715dup	p.Arg1906ThrfsTer8	p.R1906Tfs*8	ENST00000324856	NM_006015.4	1904	gaa/gAaa																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2221573	2221573	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	148	808	1	ENST00000326181.6:c.442C>T	p.His148Tyr	p.H148Y	ENST00000326181	NM_032271.2	148	Cac/Tac																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0003023-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			857	95	582	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49438210	49438211	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003023-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			877	64	542	0	ENST00000301067.7:c.5058dup	p.Arg1687ThrfsTer4	p.R1687Tfs*4	ENST00000301067	NM_003482.3	1686	-/A																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	295	359	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	156	350	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																												NEWRECORD																																		
CTLA4	1493	MSKCC	GRCh37	2	204736166	204736166	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	238	497	0	ENST00000302823.3:c.529del	p.Tyr177IlefsTer10	p.Y177Ifs*10	ENST00000302823	NM_005214.4	175	Ttt/tt																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29430136	29430136	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs74716434		P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	31	289	1	ENST00000389048.3:c.3839C>T	p.Ala1280Val	p.A1280V	ENST00000389048	NM_004304.4	1280	gCg/gTg																																												NEWRECORD																																		
FAM46C	0	MSKCC	GRCh37	1	118166505	118166505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	59	358	0	ENST00000369448.3:c.1015C>T	p.Arg339Cys	p.R339C	ENST00000369448	NM_017709.3	339	Cgt/Tgt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	175	298	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11217207	11217207	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	79	298	0	ENST00000361445.4:c.4469+2T>C		p.X1490_splice	ENST00000361445	NM_004958.3	1490																																													NEWRECORD																																		
SDHB	0	MSKCC	GRCh37	1	17380489	17380489	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	283	377	0	ENST00000375499.3:c.26T>C	p.Leu9Ser	p.L9S	ENST00000375499	NM_003000.2	9	tTg/tCg																																												NEWRECORD																																		
MUTYH	0	MSKCC	GRCh37	1	45797890	45797890	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146044717		P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	35	461	0	ENST00000372115.3:c.839G>A	p.Arg280His	p.R280H	ENST00000372115	NM_001048171.1	280	cGc/cAc																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78435636	78435636	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	271	438	0	ENST00000370768.2:c.184G>T	p.Gly62Ter	p.G62*	ENST00000370768	NM_003902.3	62	Gga/Tga																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99160342	99160342	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	25	287	0	ENST00000074304.5:c.821T>C	p.Val274Ala	p.V274A	ENST00000074304	NM_001134224.1	274	gTg/gCg																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209116175	209116175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	73	398	0	ENST00000345146.2:c.101A>G	p.Tyr34Cys	p.Y34C	ENST00000345146	NM_005896.2	34	tAc/tGc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713346	30713346	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112465572		P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	18	327	0	ENST00000359013.4:c.746G>A	p.Arg249His	p.R249H	ENST00000359013	NM_001024847.2	249	cGc/cAc																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37070411	37070411	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	171	340	1	ENST00000231790.2:c.1546C>T	p.Gln516Ter	p.Q516*	ENST00000231790	NM_000249.3	516	Cag/Tag																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49405964	49405964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	87	448	0	ENST00000418115.1:c.174G>T	p.Trp58Cys	p.W58C	ENST00000418115	NM_001664.2	58	tgG/tgT																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134960032	134960032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	59	333	0	ENST00000398015.3:c.2389G>A	p.Ala797Thr	p.A797T	ENST00000398015	NM_004441.4	797	Gcc/Acc																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185191379	185191379	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	42	348	0	ENST00000265026.3:c.2260A>C	p.Ser754Arg	p.S754R	ENST00000265026	NM_004721.4	754	Agc/Cgc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187521198	187521198	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	37	578	0	ENST00000441802.2:c.11957A>C	p.Glu3986Ala	p.E3986A	ENST00000441802	NM_005245.3	3986	gAg/gCg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187540721	187540721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	54	425	0	ENST00000441802.2:c.7019G>A	p.Gly2340Asp	p.G2340D	ENST00000441802	NM_005245.3	2340	gGc/gAc																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876136	35876136	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	263	397	0	ENST00000303115.3:c.928A>T	p.Arg310Trp	p.R310W	ENST00000303115	NM_002185.3	310	Agg/Tgg																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94066627	94066627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	314	588	1	ENST00000369303.4:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000369303	NM_004440.3	378	Gaa/Aaa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139413924	139413924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	153	406	0	ENST00000277541.6:c.836A>G	p.Tyr279Cys	p.Y279C	ENST00000277541	NM_017617.3	279	tAc/tGc																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77060334	77060334	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	28	339	0	ENST00000356341.3:c.837-2A>C		p.X279_splice	ENST00000356341	NM_002576.4	279																																													NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108190680	108190680	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	83	310	2	ENST00000278616.4:c.6348-1G>A		p.X2116_splice	ENST00000278616	NM_000051.3	2116																																													NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435385	18435385	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	89	445	0	ENST00000266497.5:c.370T>C	p.Cys124Arg	p.C124R	ENST00000266497		124	Tgc/Cgc																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57864309	57864309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	194	576	0	ENST00000228682.2:c.1786G>A	p.Ala596Thr	p.A596T	ENST00000228682	NM_005269.2	596	Gcc/Acc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28877320	28877320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	144	213	0	ENST00000282397.4:c.4001C>T	p.Ser1334Phe	p.S1334F	ENST00000282397	NM_002019.4	1334	tCc/tTc																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36986574	36986574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	21	276	0	ENST00000354822.5:c.1115G>A	p.Gly372Asp	p.G372D	ENST00000354822	NM_001079668.2	372	gGc/gAc																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2129325	2129325	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	46	451	0	ENST00000219476.3:c.3180G>A	p.Trp1060Ter	p.W1060*	ENST00000219476	NM_000548.3	1060	tgG/tgA																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857833	9857833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	22	512	1	ENST00000330684.3:c.3568C>T	p.His1190Tyr	p.H1190Y	ENST00000330684	NM_001134407.1	1190	Cac/Tac																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821547	72821547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	118	323	0	ENST00000268489.5:c.10628C>A	p.Ala3543Asp	p.A3543D	ENST00000268489	NM_006885.3	3543	gCt/gAt																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610421	10610421	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	197	388	1	ENST00000171111.5:c.289A>T	p.Lys97Ter	p.K97*	ENST00000171111	NM_203500.1	97	Aag/Tag																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20480138	20480138	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	146	426	0	ENST00000346618.3:c.459del	p.Lys154ArgfsTer41	p.K154Rfs*41	ENST00000346618	NM_001949.4	152	aCc/ac																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117681016	117681016	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	37	396	0	ENST00000368508.3:c.3604del	p.Asp1202ThrfsTer41	p.D1202Tfs*41	ENST00000368508	NM_002944.2	1202	Gac/ac																																												NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	44	255	2	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61729435	61729435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	45	408	0	ENST00000401558.2:c.312del	p.Lys104AsnfsTer17	p.K104Nfs*17	ENST00000401558	NM_003400.3	104	aaA/aa																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48954320	48954321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	273	325	0	ENST00000267163.4:c.1446dup	p.His483SerfsTer10	p.H483Sfs*10	ENST00000267163	NM_000321.2	481	att/aTtt																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553280	106553281	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	71	368	0	ENST00000369096.4:c.1251dupC	p.Tyr418LeufsTer6	p.Y418Lfs*6	ENST00000369096	NM_001198.3	415	-/C																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	291	421	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	254	326	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	404	539	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204735422	204735422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	145	268	0	ENST00000302823.3:c.223C>T	p.Arg75Trp	p.R75W	ENST00000302823	NM_005214.4	75	Cgg/Tgg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56183205	56183205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	105	214	0	ENST00000399503.3:c.4115G>A	p.Gly1372Asp	p.G1372D	ENST00000399503	NM_005921.1	1372	gGt/gAt																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435658	18435658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143896492		P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	82	256	0	ENST00000266497.5:c.643G>A	p.Gly215Arg	p.G215R	ENST00000266497		215	Gga/Aga																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5231459	5231459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	197	482	0	ENST00000357368.4:c.2017G>A	p.Gly673Ser	p.G673S	ENST00000357368	NM_002850.3	673	Ggc/Agc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	232	352	1	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	232	352	1	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	232	352	1	ENST00000304494.5:c.247C>A	p.His83Asn	p.H83N	ENST00000304494	NM_000077.4	83	Cac/Aac																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88680659	88680659	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	108	603	0	ENST00000360948.2:c.598T>C	p.Phe200Leu	p.F200L	ENST00000360948	NM_001012338.2	200	Ttc/Ctc																																												NEWRECORD																																		
HOXB13	0	MSKCC	GRCh37	17	46804284	46804284	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	256	829	0	ENST00000290295.7:c.723C>G	p.Ile241Met	p.I241M	ENST00000290295	NM_006361.5	241	atC/atG																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9523271	9523271	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	142	760	0	ENST00000353224.5:c.1966C>G	p.Arg656Gly	p.R656G	ENST00000353224	NM_177990.2	656	Cgg/Ggg																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30648415	30648416	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0014424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	127	671	0	ENST00000359013.4:c.41_42dup	p.Val15SerfsTer41	p.V15Sfs*41	ENST00000359013	NM_001024847.2	14	atc/aTCtc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30691813	30691814	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014424-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	203	724	0	ENST00000359013.4:c.391dup	p.Leu131ProfsTer5	p.L131Pfs*5	ENST00000359013	NM_001024847.2	130	-/C																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	341	360	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0006448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	172	167	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0006448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	172	167	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																												NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56160588	56160588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	155	386	1	ENST00000399503.3:c.862C>T	p.Arg288Ter	p.R288*	ENST00000399503	NM_005921.1	288	Cga/Tga																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467865	66467865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	139	407	2	ENST00000273854.3:c.404G>A	p.Arg135Gln	p.R135Q	ENST00000273854	NM_004439.5	135	cGg/cAg																																												NEWRECORD																																		
STK40	0	MSKCC	GRCh37	1	36809497	36809497	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	343	405	0	ENST00000373129.3:c.968A>C	p.Asp323Ala	p.D323A	ENST00000373129	NM_032017.1	323	gAc/gCc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187527314	187527314	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	162	330	0	ENST00000441802.2:c.10260A>T	p.Arg3420Ser	p.R3420S	ENST00000441802	NM_005245.3	3420	agA/agT																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533685	63533685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	490	419	0	ENST00000307078.5:c.1469C>T	p.Ala490Val	p.A490V	ENST00000307078	NM_004655.3	490	gCg/gTg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974754	21974766	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGACCCCGGGC	CCCGACCCCGGGC	-			P-0006448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	92	253	0	ENST00000304494.5:c.61_73delGCCCGGGGTCGGG	p.Ala21Ter	p.A21*	ENST00000304494	NM_000077.4	21	GCCCGGGGTCGGGta/ta																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099102	27099103	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	386	429	0	ENST00000324856.7:c.3524dup	p.Leu1176IlefsTer17	p.L1176Ifs*17	ENST00000324856	NM_006015.4	1173	atc/atCc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29443574	29443574	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	265	586	0	ENST00000389048.3:c.3643C>A	p.Pro1215Thr	p.P1215T	ENST00000389048	NM_004304.4	1215	Ccg/Acg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576888	7576888	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	182	615	0	ENST00000269305.4:c.958A>T	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	320	Aag/Tag																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77090974	77090974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3711	583	583	1	ENST00000356341.3:c.256C>T	p.His86Tyr	p.H86Y	ENST00000356341	NM_002576.4	86	Cat/Tat																																												NEWRECORD																																		
MSI1	0	MSKCC	GRCh37	12	120794714	120794714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	224	477	0	ENST00000257552.2:c.643G>C	p.Gly215Arg	p.G215R	ENST00000257552	NM_002442.3	215	Ggc/Cgc																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89807250	89807252	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	148	526	1	ENST00000389301.3:c.3788_3790del	p.Phe1263del	p.F1263del	ENST00000389301	NM_000135.2	1263	tTCTcc/tcc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142176504	142176504	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	216	427	2	ENST00000350721.4:c.7597C>T	p.Arg2533Ter	p.R2533*	ENST00000350721	NM_001184.3	2533	Cga/Tga																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186503816	186503816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	200	467	1	ENST00000323963.5:c.493G>A	p.Asp165Asn	p.D165N	ENST00000323963		165	Gat/Aat																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56152571	56152572	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014483-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	316	337	0	ENST00000399503.3:c.629dup	p.Val211CysfsTer9	p.V211Cfs*9	ENST00000399503	NM_005921.1	209	-/C																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48023036	48023036	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	40	260	0	ENST00000234420.5:c.461C>G	p.Ser154Ter	p.S154*	ENST00000234420	NM_000179.2	154	tCa/tGa																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55370981	55370982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			598	36	192	0	ENST00000297316.4:c.283_284insT	p.Asn95IlefsTer67	p.N95Ifs*67	ENST00000297316	NM_022454.3	95	aac/aTac																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	51	281	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101267	27101268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0011531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	57	410	0	ENST00000324856.7:c.4555dup	p.Gln1519ProfsTer13	p.Q1519Pfs*13	ENST00000324856	NM_006015.4	1517	gcc/gCcc																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0011531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	137	520	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68847275	68847277	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0011531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	100	490	0	ENST00000261769.5:c.1199_1201del	p.Asp400del	p.D400del	ENST00000261769	NM_004360.3	399	acTGAt/act																																												NEWRECORD																																		
FGF19	0	MSKCC	GRCh37	11	69518457	69518457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	26	109	0	ENST00000294312.3:c.188G>A	p.Arg63His	p.R63H	ENST00000294312	NM_005117.2	63	cGt/cAt																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68855958	68855958	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	113	498	1	ENST00000261769.5:c.1766A>T	p.Asn589Ile	p.N589I	ENST00000261769	NM_004360.3	589	aAt/aTt																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39937102	39937102	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	210	447	0	ENST00000378444.4:c.81A>T	p.Glu27Asp	p.E27D	ENST00000378444	NM_001123385.1	27	gaA/gaT																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100630137	100630137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	215	494	0	ENST00000308731.7:c.136C>T	p.Arg46Cys	p.R46C	ENST00000308731	NM_000061.2	46	Cgt/Tgt																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	494	358	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0007508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	784	396	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55153609	55153609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	143	390	0	ENST00000257290.5:c.2575G>A	p.Val859Met	p.V859M	ENST00000257290	NM_006206.4	859	Gtg/Atg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11300444	11300444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	158	290	0	ENST00000361445.4:c.1702C>T	p.Pro568Ser	p.P568S	ENST00000361445	NM_004958.3	568	Cct/Tct																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29001342	29001342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	218	339	1	ENST00000282397.4:c.1390A>G	p.Ile464Val	p.I464V	ENST00000282397	NM_002019.4	464	Atc/Gtc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174176	112174177	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	278	447	0	ENST00000257430.4:c.2886dup	p.Ser963Ter	p.S963*	ENST00000257430	NM_000038.5	962	gat/gaTt																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	52	314	1				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
MAPK1	0	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	13	518	1	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133738181	133738181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	46	413	0	ENST00000318560.5:c.581C>T	p.Thr194Ile	p.T194I	ENST00000318560	NM_005157.4	194	aCc/aTc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72827475	72827475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	37	857	2	ENST00000268489.5:c.9106C>T	p.Arg3036Trp	p.R3036W	ENST00000268489	NM_006885.3	3036	Cgg/Tgg																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153245370	153245371	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	13	340	0	ENST00000281708.4:c.1820dup	p.Asp607GlufsTer37	p.D607Efs*37	ENST00000281708	NM_033632.3	607	gat/gaAt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023247	27023259	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAGCCGCCCGG	CGGAGCCGCCCGG	-			P-0005690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	61	290	0	ENST00000324856.7:c.356_368delAGCCGCCCGGCGG	p.Glu119AlafsTer109	p.E119Afs*109	ENST00000324856	NM_006015.4	118	aCGGAGCCGCCCGGc/ac																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	177	320	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67645922	67645922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			29	131	319	0	ENST00000264010.4:c.850C>T	p.His284Tyr	p.H284Y	ENST00000264010	NM_006565.3	284	Cac/Tac																																												NEWRECORD																																		
NKX3-1	0	MSKCC	GRCh37	8	23538852	23538852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	31	310	0	ENST00000380871.4:c.587C>T	p.Ser196Phe	p.S196F	ENST00000380871	NM_006167.3	196	tCt/tTt																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12016585	12016585	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			46	173	343	0	ENST00000353533.5:c.721G>T	p.Gly241Ter	p.G241*	ENST00000353533	NM_003010.3	241	Gga/Tga																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71101695	71101698	+	frameshift_variant	Frame_Shift_Del	DEL	GGCT	GGCT	-			P-0001875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			55	120	399	0	ENST00000318789.4:c.500_503del	p.Gln167LeufsTer38	p.Q167Lfs*38	ENST00000318789	NM_032682.5	167	cAGCCt/ct																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111475	8111476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	267	377	2	ENST00000346208.3:c.962dupA	p.Thr322AspfsTer30	p.T322Dfs*30	ENST00000346208		321	cag/cAag																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	220	462	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2138599	2138610	+	stop_lost,inframe_deletion	Nonstop_Mutation	DEL	CGAGTTTGTGTG	CGAGTTTGTGTG	-			P-0012643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	320	437	1	ENST00000219476.3:c.5412_5423del	p.GluPheValTer1805delextTer15	p.EFV*1805delext*15	ENST00000219476	NM_000548.3	1805	acCGAGTTTGTGTGa/aca																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108196950	108196951	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CC			P-0012643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	271	261	0	ENST00000278616.4:c.6974_6975insCC	p.Asn2326ArgfsTer6	p.N2326Rfs*6	ENST00000278616	NM_000051.3	2325	gcg/gCCcg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	88	483	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	24	528	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	13	1057	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12871063	12871064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	137	326	0	ENST00000228872.4:c.291dup	p.Ala98CysfsTer27	p.A98Cfs*27	ENST00000228872	NM_004064.3	97	ggt/ggTt																																												NEWRECORD																																		
FAM175A	0	MSKCC	GRCh37	4	84383707	84383707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	12	576	2	ENST00000321945.7:c.1145C>G	p.Ala382Gly	p.A382G	ENST00000321945	NM_139076.2	382	gCa/gGa																																												NEWRECORD																																		
CD276	0	MSKCC	GRCh37	15	74003504	74003504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	48	680	0	ENST00000318443.5:c.1575C>A	p.Ser525Arg	p.S525R	ENST00000318443	NM_001024736.1	525	agC/agA																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67662321	67662321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	108	595	0	ENST00000264010.4:c.1567T>G	p.Tyr523Asp	p.Y523D	ENST00000264010	NM_006565.3	523	Tac/Gac																																												NEWRECORD																																		
FAM175A	0	MSKCC	GRCh37	4	84383703	84383703	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	12	573	2	ENST00000321945.7:c.1149del	p.Met385Ter	p.M385*	ENST00000321945	NM_139076.2	383	tcC/tc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			370	277	640	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			295	249	560	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12038912	12038912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			569	231	639	0	ENST00000396373.4:c.1205A>G	p.Tyr402Cys	p.Y402C	ENST00000396373	NM_001987.4	402	tAc/tGc																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9782654	9782654	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			304	448	555	0	ENST00000377346.4:c.2416C>A	p.Leu806Met	p.L806M	ENST00000377346	NM_005026.3	806	Ctg/Atg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29917797	29917797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			495	198	542	0	ENST00000389048.3:c.871C>T	p.Arg291Cys	p.R291C	ENST00000389048	NM_004304.4	291	Cgc/Tgc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808647	1808647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			480	186	486	0	ENST00000260795.2:c.2260G>A	p.Val754Met	p.V754M	ENST00000260795		754	Gtg/Atg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66213909	66213909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			510	212	661	0	ENST00000273854.3:c.2521C>T	p.Pro841Ser	p.P841S	ENST00000273854	NM_004439.5	841	Cca/Tca																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50468029	50468029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			410	194	362	1	ENST00000331340.3:c.1264G>A	p.Ala422Thr	p.A422T	ENST00000331340	NM_006060.4	422	Gcg/Acg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8504378	8504378	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			255	155	426	0	ENST00000356435.5:c.1705T>A	p.Ser569Thr	p.S569T	ENST00000356435		569	Tca/Aca																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46231337	46231337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			441	182	516	1	ENST00000334344.6:c.1177G>A	p.Glu393Lys	p.E393K	ENST00000334344	NM_152641.2	393	Gaa/Aaa																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121432110	121432110	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			534	222	528	0	ENST00000257555.6:c.857A>T	p.Tyr286Phe	p.Y286F	ENST00000257555		286	tAc/tTc																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2218120	2218120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			571	275	600	0	ENST00000326181.6:c.182C>T	p.Ser61Phe	p.S61F	ENST00000326181	NM_032271.2	61	tCc/tTc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857029	9857029	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			513	201	617	0	ENST00000330684.3:c.4372C>G	p.Pro1458Ala	p.P1458A	ENST00000330684	NM_001134407.1	1458	Cct/Gct																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47087987	47087987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			490	218	463	0	ENST00000409792.3:c.7088C>A	p.Pro2363His	p.P2363H	ENST00000409792	NM_014159.6	2363	cCc/cAc																																												NEWRECORD																																		
PHOX2B	0	MSKCC	GRCh37	4	41750450	41750450	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			453	188	550	0	ENST00000226382.2:c.178C>G	p.Leu60Val	p.L60V	ENST00000226382	NM_003924.3	60	Ctc/Gtc																																												NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32954272	32954273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs886038189		P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			762	202	582	2	ENST00000380152.3:c.9253dup	p.Thr3085AsnfsTer26	p.T3085Nfs*26	ENST00000380152		3082	-/A																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56439988	56439993	+	frameshift_variant	Frame_Shift_Ins	INS	GGATCC	GGATCC	TCATAATCTG			P-0001104-T05-IM3									Unknown	SOMATIC				MSK-IMPACT			284	219	472	0	ENST00000407977.2:c.599_604delinsCAGATTATGA	p.Trp200SerfsTer60	p.W200Sfs*60	ENST00000407977		200	tGGATCCta/tCAGATTATGAta																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	68	370	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	107	368	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178577	56178579	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0006219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	56	500	0	ENST00000399503.3:c.3560_3562del	p.Glu1187del	p.E1187del	ENST00000399503	NM_005921.1	1184	GAA/-																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42794524	42794524	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143443453		P-0006219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	165	550	0	ENST00000575354.2:c.1604C>T	p.Ser535Phe	p.S535F	ENST00000575354	NM_015125.3	535	tCt/tTt																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70354235	70354235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	195	659	0	ENST00000374080.3:c.4646G>A	p.Arg1549His	p.R1549H	ENST00000374080		1549	cGc/cAc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589583	67589584	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACATGA			P-0006219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	63	332	0	ENST00000274335.5:c.1348_1353dup	p.His450_Glu451dup	p.H450_E451dup	ENST00000274335		450	tta/ttACATGAa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	70	540	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	126	1047	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713675	30713676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	58	479	0	ENST00000359013.4:c.1076dup	p.Glu360GlyfsTer30	p.E360Gfs*30	ENST00000359013	NM_001024847.2	359	cag/cAag																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66270108	66270108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014914-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	47	535	1	ENST00000273854.3:c.1774G>A	p.Val592Ile	p.V592I	ENST00000273854	NM_004439.5	592	Gtc/Atc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	264	353	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11106898	11106898	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	151	416	1	ENST00000344626.4:c.1603G>T	p.Glu535Ter	p.E535*	ENST00000344626	NM_003072.3	535	Gag/Tag																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215593477	215593477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	104	362	1	ENST00000260947.4:c.2257G>T	p.Gly753Cys	p.G753C	ENST00000260947	NM_000465.2	753	Ggc/Tgc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15281551	15281551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	212	459	2	ENST00000263388.2:c.4822G>A	p.Ala1608Thr	p.A1608T	ENST00000263388	NM_000435.2	1608	Gct/Act																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934798	9934798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	173	571	0	ENST00000330684.3:c.1492G>T	p.Gly498Cys	p.G498C	ENST00000330684	NM_001134407.1	498	Ggt/Tgt																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49724702	49724702	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	120	332	0	ENST00000449682.2:c.487C>G	p.Arg163Gly	p.R163G	ENST00000449682	NM_020998.3	163	Cgg/Ggg																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612172	189612172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	119	445	0	ENST00000264731.3:c.1924G>A	p.Val642Met	p.V642M	ENST00000264731	NM_003722.4	642	Gtg/Atg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187518010	187518010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	104	325	0	ENST00000441802.2:c.12684G>T	p.Leu4228Phe	p.L4228F	ENST00000441802	NM_005245.3	4228	ttG/ttT																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32163848	32163848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	87	215	0	ENST00000375023.3:c.5378G>A	p.Arg1793Gln	p.R1793Q	ENST00000375023	NM_004557.3	1793	cGa/cAa																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81399260	81399260	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	158	369	1	ENST00000222390.5:c.28C>A	p.Leu10Met	p.L10M	ENST00000222390	NM_000601.4	10	Ctg/Atg																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57864336	57864336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	301	605	0	ENST00000228682.2:c.1813G>T	p.Ala605Ser	p.A605S	ENST00000228682	NM_005269.2	605	Gca/Tca																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610361	10610361	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	195	397	0	ENST00000171111.5:c.349G>T	p.Glu117Ter	p.E117*	ENST00000171111	NM_203500.1	117	Gag/Tag																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40741860	40741860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	288	366	0	ENST00000392038.2:c.1112G>T	p.Arg371Leu	p.R371L	ENST00000392038	NM_001626.4	371	cGc/cTc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220628	1220629	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	140	478	0	ENST00000326873.7:c.650dup	p.Ala218GlyfsTer48	p.A218Gfs*48	ENST00000326873	NM_000455.4	216	tcc/tCcc																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002232-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	458	313	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0002232-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	238	378	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50459514	50459514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002232-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	144	347	0	ENST00000331340.3:c.803C>A	p.Ala268Glu	p.A268E	ENST00000331340	NM_006060.4	268	gCa/gAa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16042476	16042476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002232-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			766	339	519	0	ENST00000268712.3:c.1198C>A	p.Leu400Ile	p.L400I	ENST00000268712	NM_006311.3	400	Ctc/Atc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68856033	68856034	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002232-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	315	546	0	ENST00000261769.5:c.1842dup	p.Ile615HisfsTer2	p.I615Hfs*2	ENST00000261769	NM_004360.3	614	atc/atCc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177446	56177450	+	frameshift_variant	Frame_Shift_Del	DEL	AATTC	AATTC	GGTT			P-0002232-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			832	333	504	0	ENST00000399503.3:c.2419_2423delinsGGTT	p.Asn807GlyfsTer15	p.N807Gfs*15	ENST00000399503	NM_005921.1	807	AATTCc/GGTTc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	227	278	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202151289	202151290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	364	854	0	ENST00000358485.4:c.1596dupA	p.Leu533ThrfsTer6	p.L533Tfs*6	ENST00000358485	NM_001080125.1	530	aga/agAa																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46743519	46743519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	259	501	0	ENST00000371975.4:c.1900C>T	p.Arg634Cys	p.R634C	ENST00000371975	NM_003579.3	634	Cgt/Tgt																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52440903	52440903	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	491	501	0	ENST00000460680.1:c.601G>T	p.Glu201Ter	p.E201*	ENST00000460680	NM_004656.3	201	Gag/Tag																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			675	350	373	0	ENST00000281708.4:c.1436G>C	p.Arg479Pro	p.R479P	ENST00000281708	NM_033632.3	479	cGa/cCa																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70342421	70342421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			860	82	733	0	ENST00000374080.3:c.1312C>T	p.Arg438Cys	p.R438C	ENST00000374080		438	Cgc/Tgc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1803350	1803350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	95	389	0	ENST00000260795.2:c.619C>T	p.Arg207Trp	p.R207W	ENST00000260795		207	Cgg/Tgg																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138199778	138199778	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	149	354	0	ENST00000237289.4:c.1196A>G	p.Asn399Ser	p.N399S	ENST00000237289	NM_001270507.1	399	aAc/aGc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151845769	151845769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	52	416	0	ENST00000262189.6:c.13243G>A	p.Gly4415Arg	p.G4415R	ENST00000262189	NM_170606.2	4415	Gga/Aga																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52715939	52715939	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	166	313	1	ENST00000322088.6:c.504G>T	p.Gln168His	p.Q168H	ENST00000322088	NM_014225.5	168	caG/caT																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44937648	44937648	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	103	149	0	ENST00000377967.4:c.2836G>T	p.Glu946Ter	p.E946*	ENST00000377967	NM_021140.2	946	Gaa/Taa																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204732740	204732741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	81	341	0	ENST00000302823.3:c.81dupT	p.Leu28SerfsTer32	p.L28Sfs*32	ENST00000302823	NM_005214.4	25	-/T																																												NEWRECORD																																		
MYD88	0	MSKCC	GRCh37	3	38181890	38181890	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	96	366	1	ENST00000396334.3:c.514G>T	p.Glu172Ter	p.E172*	ENST00000396334	NM_002468.4	172	Gag/Tag																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55956149	55956149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	101	610	1	ENST00000263923.4:c.3166G>A	p.Asp1056Asn	p.D1056N	ENST00000263923	NM_002253.2	1056	Gat/Aat																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	233715	233715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	123	295	0	ENST00000264932.6:c.1019G>A	p.Arg340Lys	p.R340K	ENST00000264932	NM_004168.2	340	aGa/aAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112154992	112154992	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	103	539	0	ENST00000257430.4:c.1263G>T	p.Trp421Cys	p.W421C	ENST00000257430	NM_000038.5	421	tgG/tgT																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180056396	180056396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148616009		P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	126	367	0	ENST00000261937.6:c.848G>A	p.Arg283His	p.R283H	ENST00000261937	NM_182925.4	283	cGc/cAc																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81386569	81386569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	68	509	0	ENST00000222390.5:c.418G>T	p.Val140Leu	p.V140L	ENST00000222390	NM_000601.4	140	Gta/Tta																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8339023	8339023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	94	429	0	ENST00000356435.5:c.5278G>T	p.Ala1760Ser	p.A1760S	ENST00000356435		1760	Gca/Tca																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1025941	1025941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	205	692	0	ENST00000358495.3:c.589G>C	p.Glu197Gln	p.E197Q	ENST00000358495	NM_134424.2	197	Gaa/Caa																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57865598	57865598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1348	263	938	0	ENST00000228682.2:c.3075G>C	p.Leu1025Phe	p.L1025F	ENST00000228682	NM_005269.2	1025	ttG/ttC																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28886201	28886201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	91	578	0	ENST00000282397.4:c.3421C>A	p.Pro1141Thr	p.P1141T	ENST00000282397	NM_002019.4	1141	Cca/Aca																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123205112	123205112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	90	793	0	ENST00000218089.9:c.2472G>T	p.Glu824Asp	p.E824D	ENST00000218089	NM_001042749.1	824	gaG/gaT																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32163619	32163620	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	75	358	0	ENST00000375023.3:c.5606dup	p.Arg1871SerfsTer45	p.R1871Sfs*45	ENST00000375023	NM_004557.3	1869	ggc/ggGc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8521463	8521463	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	190	444	0	ENST00000356435.5:c.775del	p.Ala259ProfsTer9	p.A259Pfs*9	ENST00000356435		259	Gcc/cc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000346-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	332	884	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46231437	46231437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000346-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	189	397	0	ENST00000334344.6:c.1277C>A	p.Thr426Lys	p.T426K	ENST00000334344	NM_152641.2	426	aCg/aAg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40944607	40944607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000346-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	96	251	0	ENST00000373198.4:c.1895G>A	p.Arg632Gln	p.R632Q	ENST00000373198	NM_133170.3	632	cGa/cAa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106519966	106519967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0000346-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	137	351	0	ENST00000359195.3:c.2395_2396dupGA	p.Cys801AsnfsTer4	p.C801Nfs*4	ENST00000359195	NM_002649.2	798	-/GA																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0013410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	1297	652	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	97	383	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156851381	156851381	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	83	410	0	ENST00000524377.1:c.2338C>G	p.Arg780Gly	p.R780G	ENST00000524377	NM_002529.3	780	Cgg/Ggg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29498082	29498082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	102	473	0	ENST00000389048.3:c.1924G>T	p.Asp642Tyr	p.D642Y	ENST00000389048	NM_004304.4	642	Gac/Tac																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94163100	94163100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	133	591	0	ENST00000323929.3:c.2047G>C	p.Gly683Arg	p.G683R	ENST00000323929	NM_005591.3	683	Ggg/Cgg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3779451	3779451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	130	547	1	ENST00000262367.5:c.5597G>T	p.Arg1866Leu	p.R1866L	ENST00000262367	NM_004380.2	1866	cGc/cTc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610298	10610298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	115	555	1	ENST00000171111.5:c.412G>T	p.Glu138Ter	p.E138*	ENST00000171111	NM_203500.1	138	Gaa/Taa																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220492	1220492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	101	445	1	ENST00000326873.7:c.587del	p.Gly196AlafsTer91	p.G196Afs*91	ENST00000326873	NM_000455.4	195	ctG/ct																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11136170	11136170	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	94	473	0	ENST00000344626.4:c.3155del	p.Phe1052SerfsTer54	p.F1052Sfs*54	ENST00000344626	NM_003072.3	1052	Ttc/tc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971036	21971036	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TT			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	67	232	0	ENST00000304494.5:c.322delinsAA	p.Asp108LysfsTer12	p.D108Kfs*12	ENST00000304494	NM_000077.4	108	Gat/AAat																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971036	21971036	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TT			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	67	232	0	ENST00000304494.5:c.322delinsAA	p.Asp108LysfsTer12	p.D108Kfs*12	ENST00000304494	NM_000077.4	108	Gat/AAat																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971036	21971036	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TT			P-0011298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	67	232	0	ENST00000304494.5:c.322delinsAA	p.Asp108LysfsTer12	p.D108Kfs*12	ENST00000304494	NM_000077.4	108	Gat/AAat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	180	330	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94120381	94120381	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	271	479	0	ENST00000369303.4:c.670T>C	p.Phe224Leu	p.F224L	ENST00000369303	NM_004440.3	224	Ttt/Ctt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151835933	151835933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	126	353	0	ENST00000262189.6:c.14591G>C	p.Arg4864Thr	p.R4864T	ENST00000262189	NM_170606.2	4864	aGa/aCa																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66729175	66729175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	181	265	0	ENST00000307102.5:c.383G>T	p.Gly128Val	p.G128V	ENST00000307102	NM_002755.3	128	gGc/gTc																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2124290	2124290	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	228	397	0	ENST00000219476.3:c.2445G>T	p.Met815Ile	p.M815I	ENST00000219476	NM_000548.3	815	atG/atT																																												NEWRECORD																																		
GPS2	0	MSKCC	GRCh37	17	7216889	7216889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	289	484	0	ENST00000380728.2:c.632G>C	p.Arg211Thr	p.R211T	ENST00000380728		211	aGa/aCa																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	74	174	0	ENST00000326873.7:c.921-1G>A		p.X307_splice	ENST00000326873	NM_000455.4	307																																													NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10600416	10600416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	215	423	0	ENST00000171111.5:c.1439G>T	p.Gly480Val	p.G480V	ENST00000171111	NM_203500.1	480	gGg/gTg																																												NEWRECORD																																		
SRC	0	MSKCC	GRCh37	20	36024656	36024656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	235	374	0	ENST00000358208.4:c.645C>G	p.Phe215Leu	p.F215L	ENST00000358208		215	ttC/ttG																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39741500	39741500	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	158	279	0	ENST00000361337.2:c.1387G>C	p.Glu463Gln	p.E463Q	ENST00000361337	NM_003286.2	463	Gaa/Caa																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2226617	2226618	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	130	272	0	ENST00000398665.3:c.4100dup	p.Leu1368ProfsTer170	p.L1368Pfs*170	ENST00000398665	NM_032482.2	1366	cct/ccTt																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	503	454	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226579931	226579931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	271	607	0	ENST00000366794.5:c.371C>T	p.Thr124Met	p.T124M	ENST00000366794	NM_001618.3	124	aCg/aTg																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	331	267	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	82	147	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11177098	11177098	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	47	574	0	ENST00000361445.4:c.6979A>G	p.Met2327Val	p.M2327V	ENST00000361445	NM_004958.3	2327	Atg/Gtg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			933	74	498	0	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120461933	120461933	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	134	201	0	ENST00000256646.2:c.5781+2T>C		p.X1927_splice	ENST00000256646	NM_024408.3	1927																																													NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47641433	47641433	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs144288433		P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	68	489	0	ENST00000233146.2:c.818T>C	p.Val273Ala	p.V273A	ENST00000233146	NM_000251.2	273	gTa/gCa																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142215235	142215235	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	114	408	0	ENST00000350721.4:c.5866T>A	p.Tyr1956Asn	p.Y1956N	ENST00000350721	NM_001184.3	1956	Tac/Aac																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131976413	131976413	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	204	372	0	ENST00000265335.6:c.3668T>C	p.Leu1223Pro	p.L1223P	ENST00000265335		1223	cTc/cCc																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6037056	6037056	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	145	314	0	ENST00000265849.7:c.706-2A>C		p.X236_splice	ENST00000265849	NM_000535.5	236																																													NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135787774	135787774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	156	358	0	ENST00000298552.3:c.808T>C	p.Ser270Pro	p.S270P	ENST00000298552	NM_001162426.1	270	Tca/Cca																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12022819	12022819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	135	193	0	ENST00000396373.4:c.925C>T	p.Arg309Trp	p.R309W	ENST00000396373	NM_001987.4	309	Cgg/Tgg																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121434449	121434449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			586	296	450	0	ENST00000257555.6:c.1213A>G	p.Met405Val	p.M405V	ENST00000257555		405	Atg/Gtg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133252733	133252733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	253	440	0	ENST00000320574.5:c.967A>G	p.Thr323Ala	p.T323A	ENST00000320574	NM_006231.2	323	Acc/Gcc																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21565453	21565453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	409	601	0	ENST00000382592.4:c.433A>G	p.Arg145Gly	p.R145G	ENST00000382592	NM_014572.2	145	Agg/Ggg																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59763414	59763414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	20	384	0	ENST00000259008.2:c.2688A>G	p.Ile896Met	p.I896M	ENST00000259008	NM_032043.2	896	atA/atG																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	72	356	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7122684	7122684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	262	398	0	ENST00000302850.5:c.3470A>G	p.His1157Arg	p.H1157R	ENST00000302850	NM_000208.2	1157	cAt/cGt																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45860915	45860915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			595	219	333	1	ENST00000391945.4:c.1280C>T	p.Thr427Ile	p.T427I	ENST00000391945	NM_000400.3	427	aCc/aTc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70357474	70357474	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	290	573	1	ENST00000374080.3:c.5815C>T	p.Gln1939Ter	p.Q1939*	ENST00000374080		1939	Cag/Tag																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70361105	70361105	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	231	288	0	ENST00000374080.3:c.6293A>C	p.Gln2098Pro	p.Q2098P	ENST00000374080		2098	cAg/cCg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11182129	11182132	+	frameshift_variant	Frame_Shift_Del	DEL	CCAG	CCAG	-			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			835	47	332	0	ENST00000361445.4:c.6714_6717delCTGG	p.Trp2239PhefsTer39	p.W2239Ffs*39	ENST00000361445	NM_004958.3	2238	ggCTGG/gg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16256205	16256205	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	150	367	0	ENST00000375759.3:c.3475delA	p.Ile1159LeufsTer28	p.I1159Lfs*28	ENST00000375759	NM_015001.2	1157	gAa/ga																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16259042	16259043	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	35	229	0	ENST00000375759.3:c.6313dupG	p.Ala2105GlyfsTer18	p.A2105Gfs*18	ENST00000375759	NM_015001.2	2103	agg/aGgg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	202	339	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106809	27106810	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	259	336	0	ENST00000324856.7:c.6420_6421insA	p.Phe2141IlefsTer9	p.F2141Ifs*9	ENST00000324856	NM_006015.4	2140	-/A																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29455289	29455290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			551	160	318	0	ENST00000389048.3:c.2512dupC	p.Leu838ProfsTer27	p.L838Pfs*27	ENST00000389048	NM_004304.4	838	ctg/cCtg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589610	67589612	+	inframe_deletion	In_Frame_Del	DEL	AAA	AAA	-			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			191	77	202	0	ENST00000274335.5:c.1376_1378delAAA	p.Lys459del	p.K459del	ENST00000274335		458	gAAAaa/gaa																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6037056	6037056	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	30	314	0	ENST00000265849.7:c.706-2delA		p.X236_splice	ENST00000265849	NM_000535.5	236																																													NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434073	49434074	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	148	221	0	ENST00000301067.7:c.7479dupG	p.Phe2494ValfsTer12	p.F2494Vfs*12	ENST00000301067	NM_003482.3	2493	-/G																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	142	262	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29486049	29486050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	112	264	0	ENST00000358273.4:c.233dup	p.Asn78LysfsTer29	p.N78Kfs*29	ENST00000358273	NM_001042492.2	76	gaa/gAaa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			714	217	422	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	137	376	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			713	246	455	0	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226567674	226567674	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	206	395	0	ENST00000366794.5:c.1492A>G	p.Lys498Glu	p.K498E	ENST00000366794	NM_001618.3	498	Aag/Gag																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	147	384	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149982928	149982928	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	215	540	0	ENST00000253339.5:c.3330G>C	p.Gln1110His	p.Q1110H	ENST00000253339		1110	caG/caC																																												NEWRECORD																																		
CCND1	0	MSKCC	GRCh37	11	69465997	69465997	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	242	337	0	ENST00000227507.2:c.835G>T	p.Glu279Ter	p.E279*	ENST00000227507	NM_053056.2	279	Gag/Tag																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108158444	108158444	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	116	214	0	ENST00000278616.4:c.4109+2T>C		p.X1370_splice	ENST00000278616	NM_000051.3	1370																																													NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46287293	46287293	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	158	432	0	ENST00000334344.6:c.5238A>C	p.Arg1746Ser	p.R1746S	ENST00000334344	NM_152641.2	1746	agA/agC																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48936984	48936984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	181	470	0	ENST00000267163.4:c.752G>A	p.Arg251Gln	p.R251Q	ENST00000267163	NM_000321.2	251	cGa/cAa																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90631872	90631872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			652	229	404	0	ENST00000330062.3:c.481G>A	p.Val161Ile	p.V161I	ENST00000330062	NM_002168.2	161	Gtc/Atc																																												NEWRECORD																																		
U2AF1	0	MSKCC	GRCh37	21	44527561	44527561	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	237	391	0	ENST00000291552.4:c.44A>G	p.Lys15Arg	p.K15R	ENST00000291552	NM_006758.2	15	aAa/aGa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27087346	27087346	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	144	395	1	ENST00000324856.7:c.1921delG		p.X641_splice	ENST00000324856	NM_006015.4	641																																													NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	199	444	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225378266	225378266	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	235	626	2	ENST00000264414.4:c.629delT	p.Leu210TrpfsTer16	p.L210Wfs*16	ENST00000264414	NM_003590.4	210	tTg/tg																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371929	55371930	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	124	104	0	ENST00000297316.4:c.620dupA	p.Ser208GlufsTer157	p.S208Efs*157	ENST00000297316	NM_022454.3	207	cag/cAag																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	102	227	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	101	180	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11132428	11132430	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0000069-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			684	253	567	0	ENST00000344626.4:c.2645_2647delAAG	p.Glu882del	p.E882del	ENST00000344626	NM_003072.3	882	GAA/-																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	210	484	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	10	55	1	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	39	270	1	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48027998	48027998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	110	372	0	ENST00000234420.5:c.2876G>A	p.Arg959His	p.R959H	ENST00000234420	NM_000179.2	959	cGc/cAc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56183272	56183272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	88	290	0	ENST00000399503.3:c.4182G>T	p.Arg1394Ser	p.R1394S	ENST00000399503	NM_005921.1	1394	agG/agT																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174763	112174763	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	63	446	0	ENST00000257430.4:c.3472A>T	p.Arg1158Ter	p.R1158*	ENST00000257430	NM_000038.5	1158	Aga/Tga																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509458	106509458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	33	375	0	ENST00000359195.3:c.1452G>A	p.Met484Ile	p.M484I	ENST00000359195	NM_002649.2	484	atG/atA																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971051	21971051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	27	199	0	ENST00000304494.5:c.307C>T	p.Arg103Trp	p.R103W	ENST00000304494	NM_000077.4	103	Cgg/Tgg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971051	21971051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	27	199	0	ENST00000304494.5:c.307C>T	p.Arg103Trp	p.R103W	ENST00000304494	NM_000077.4	103	Cgg/Tgg																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971051	21971051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	27	199	0	ENST00000304494.5:c.307C>T	p.Arg103Trp	p.R103W	ENST00000304494	NM_000077.4	103	Cgg/Tgg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49445203	49445203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	71	224	0	ENST00000301067.7:c.2263C>T	p.Arg755Trp	p.R755W	ENST00000301067	NM_003482.3	755	Cgg/Tgg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48953781	48953781	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	42	319	0	ENST00000267163.4:c.1384A>G	p.Lys462Glu	p.K462E	ENST00000267163	NM_000321.2	462	Aaa/Gaa																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103528200	103528200	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	12	124	1	ENST00000355739.4:c.3508G>T	p.Gly1170Trp	p.G1170W	ENST00000355739	NM_000123.3	1170	Ggg/Tgg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11217310	11217330	+	inframe_deletion	In_Frame_Del	DEL	CCACTCGTGCAGTTTCTCATA	CCACTCGTGCAGTTTCTCATA	-			P-0010020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	123	422	0	ENST00000361445.4:c.4348_4368del	p.Tyr1450_Trp1456del	p.Y1450_W1456del	ENST00000361445	NM_004958.3	1450	TATGAGAAACTGCACGAGTGG/-																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4383210	4383210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2088	128	293	0	ENST00000261254.3:c.4G>A	p.Glu2Lys	p.E2K	ENST00000261254	NM_001759.3	2	Gag/Aag																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	567	477	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29562981	29562981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	1114	486	1	ENST00000358273.4:c.3916C>T	p.Arg1306Ter	p.R1306*	ENST00000358273	NM_001042492.2	1306	Cga/Tga																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11189872	11189872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	251	364	0	ENST00000361445.4:c.5637G>A	p.Met1879Ile	p.M1879I	ENST00000361445	NM_004958.3	1879	atG/atA																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139401883	139401883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	180	348	0	ENST00000277541.6:c.3517G>T	p.Ala1173Ser	p.A1173S	ENST00000277541	NM_017617.3	1173	Gcc/Tcc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108172382	108172382	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs3092907		P-0006090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	187	295	0	ENST00000278616.4:c.5185G>C	p.Val1729Leu	p.V1729L	ENST00000278616	NM_000051.3	1729	Gtt/Ctt																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15989602	15989602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	215	326	0	ENST00000268712.3:c.3171C>G	p.Ile1057Met	p.I1057M	ENST00000268712	NM_006311.3	1057	atC/atG																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16255704	16255705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	400	247	0	ENST00000375759.3:c.2971dup	p.Ser991PhefsTer31	p.S991Ffs*31	ENST00000375759	NM_015001.2	990	gat/gaTt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0014832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1270	297	827	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15271746	15271747	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1055	79	782	0	ENST00000263388.2:c.6692dupC	p.Ala2233GlyfsTer9	p.A2233Gfs*9	ENST00000263388	NM_000435.2	2231	cca/ccCa																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63851423	63851439	+	frameshift_variant	Frame_Shift_Del	DEL	AGACCCACCATGGCCAA	AGACCCACCATGGCCAA	-			P-0014832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	42	382	0	ENST00000279873.7:c.2203_2219del	p.Thr735HisfsTer2	p.T735Hfs*2	ENST00000279873	NM_032199.2	734	cAGACCCACCATGGCCAA/c																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56492882	56492891	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCATCAGC	AGCCATCAGC	-			P-0014832-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	111	288	0	ENST00000407977.2:c.48_57delGCTGATGGCT	p.Leu17ProfsTer31	p.L17Pfs*31	ENST00000407977		16	ctGCTGATGGCT/ct																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	172	246	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	87	618	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	101	544	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66937372	66937372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	385	379	0	ENST00000374690.3:c.2226G>T	p.Trp742Cys	p.W742C	ENST00000374690	NM_000044.3	742	tgG/tgT																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	364	387	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	69	191	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																												NEWRECORD																																		
EIF1AX	0	MSKCC	GRCh37	X	20156742	20156742	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	57	247	0	ENST00000379607.5:c.17-2A>G		p.X6_splice	ENST00000379607	NM_001412.3	6																																													NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	34	172	2	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10191506	10191506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	216	433	1	ENST00000256474.2:c.499C>T	p.Arg167Trp	p.R167W	ENST00000256474	NM_000551.3	167	Cgg/Tgg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72827732	72827732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	143	825	1	ENST00000268489.5:c.8849G>A	p.Arg2950His	p.R2950H	ENST00000268489	NM_006885.3	2950	cGc/cAc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	97	402	4	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189526226	189526226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	105	315	1	ENST00000264731.3:c.490G>A	p.Ala164Thr	p.A164T	ENST00000264731	NM_003722.4	164	Gcc/Acc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55968633	55968633	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200338299		P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	104	551	0	ENST00000263923.4:c.2030C>T	p.Thr677Met	p.T677M	ENST00000263923	NM_002253.2	677	aCg/aTg																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696438	47696438	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	256	530	0	ENST00000347630.2:c.385A>G	p.Lys129Glu	p.K129E	ENST00000347630	NM_001007230.1	129	Aaa/Gaa																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65348960	65348960	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	111	186	0	ENST00000342505.4:c.205C>T	p.Arg69Cys	p.R69C	ENST00000342505	NM_002227.2	69	Cgt/Tgt																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206651106	206651106	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148172544		P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	114	596	1	ENST00000367120.3:c.716C>T	p.Thr239Met	p.T239M	ENST00000367120	NM_014002.3	239	aCg/aTg																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206651612	206651612	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	221	647	0	ENST00000367120.3:c.922C>T	p.Arg308Ter	p.R308*	ENST00000367120	NM_014002.3	308	Cga/Tga																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206653377	206653377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	161	292	0	ENST00000367120.3:c.1261G>A	p.Ala421Thr	p.A421T	ENST00000367120	NM_014002.3	421	Gcc/Acc																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243716094	243716094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	145	534	0	ENST00000263826.5:c.1100G>A	p.Arg367Gln	p.R367Q	ENST00000263826	NM_005465.4	367	cGa/cAa																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243736242	243736242	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	192	317	2	ENST00000263826.5:c.805T>C	p.Tyr269His	p.Y269H	ENST00000263826	NM_005465.4	269	Tac/Cac																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225362495	225362495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	101	380	0	ENST00000264414.4:c.1682C>T	p.Ala561Val	p.A561V	ENST00000264414	NM_003590.4	561	gCc/gTc																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49934279	49934279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	235	1008	2	ENST00000296474.3:c.2228C>T	p.Thr743Met	p.T743M	ENST00000296474	NM_002447.2	743	aCg/aTg																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119666143	119666143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	257	416	0	ENST00000316626.5:c.338G>A	p.Arg113His	p.R113H	ENST00000316626		113	cGt/cAt																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55981044	55981044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	180	319	1	ENST00000263923.4:c.655G>T	p.Val219Leu	p.V219L	ENST00000263923	NM_002253.2	219	Gta/Tta																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187519192	187519192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	90	470	0	ENST00000441802.2:c.12191G>T	p.Gly4064Val	p.G4064V	ENST00000441802	NM_005245.3	4064	gGg/gTg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539572	187539572	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	203	408	0	ENST00000441802.2:c.8168A>T	p.Asp2723Val	p.D2723V	ENST00000441802	NM_005245.3	2723	gAt/gTt																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177792	56177792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	241	387	0	ENST00000399503.3:c.2765C>T	p.Ala922Val	p.A922V	ENST00000399503	NM_005921.1	922	gCc/gTc																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57750748	57750748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	137	433	0	ENST00000274289.3:c.1856G>A	p.Gly619Asp	p.G619D	ENST00000274289	NM_006622.3	619	gGc/gAc																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131925462	131925462	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	273	380	0	ENST00000265335.6:c.1385A>G	p.Tyr462Cys	p.Y462C	ENST00000265335		462	tAt/tGt																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32166737	32166737	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	197	396	0	ENST00000375023.3:c.4501C>T	p.Arg1501Trp	p.R1501W	ENST00000375023	NM_004557.3	1501	Cgg/Tgg																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553755	106553755	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	100	361	0	ENST00000369096.4:c.1720A>G	p.Lys574Glu	p.K574E	ENST00000369096	NM_001198.3	574	Aag/Gag																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117866581	117866581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	229	1130	2	ENST00000297338.2:c.1064C>T	p.Pro355Leu	p.P355L	ENST00000297338	NM_006265.2	355	cCg/cTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49427951	49427951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	209	600	2	ENST00000301067.7:c.10639C>T	p.Arg3547Cys	p.R3547C	ENST00000301067	NM_003482.3	3547	Cgc/Tgc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68867329	68867329	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	230	463	0	ENST00000261769.5:c.2576A>G	p.Tyr859Cys	p.Y859C	ENST00000261769	NM_004360.3	859	tAt/tGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579365	7579365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	172	449	0	ENST00000269305.4:c.322G>A	p.Gly108Ser	p.G108S	ENST00000269305	NM_001126112.2	108	Ggt/Agt																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17119796	17119796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	147	411	4	ENST00000285071.4:c.1198G>A	p.Val400Ile	p.V400I	ENST00000285071	NM_144997.5	400	Gtc/Atc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29533304	29533304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	292	595	1	ENST00000358273.4:c.1307C>T	p.Ser436Leu	p.S436L	ENST00000358273	NM_001042492.2	436	tCg/tTg																																												NEWRECORD																																		
MALT1	0	MSKCC	GRCh37	18	56411726	56411726	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	198	789	0	ENST00000348428.3:c.1910T>G	p.Leu637Arg	p.L637R	ENST00000348428	NM_006785.3	637	cTt/cGt																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11097165	11097165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	55	215	0	ENST00000344626.4:c.656C>T	p.Thr219Met	p.T219M	ENST00000344626	NM_003072.3	219	aCg/aTg																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45867712	45867712	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	103	555	1	ENST00000391945.4:c.688G>A	p.Val230Ile	p.V230I	ENST00000391945	NM_000400.3	230	Gtc/Atc																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31021232	31021232	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148964601		P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	175	411	0	ENST00000375687.4:c.1231C>T	p.Arg411Cys	p.R411C	ENST00000375687	NM_015338.5	411	Cgc/Tgc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70345884	70345884	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	124	293	0	ENST00000374080.3:c.2423-2A>G		p.X808_splice	ENST00000374080		808																																													NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	312	989	1	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25972820	25972820	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	319	628	2	ENST00000435504.4:c.1605del	p.Lys535AsnfsTer3	p.K535Nfs*3	ENST00000435504		535	aaA/aa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860383	151860390	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGCAAA	GCTGCAAA	AAAC			P-0010382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	537	262	0	ENST00000262189.6:c.10272_10279delinsGTTT	p.Leu3425PhefsTer16	p.L3425Ffs*16	ENST00000262189	NM_170606.2	3424	gcTTTGCAGCag/gcGTTTag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023007	27023008	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			P-0011299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			35	18	14	0	ENST00000324856.7:c.126_128dup	p.Ala45dup	p.A45dup	ENST00000324856	NM_006015.4	45	gag/gaGGCg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66509127	66509127	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145126637		P-0011299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	34	270	0	ENST00000273854.3:c.200G>A	p.Arg67His	p.R67H	ENST00000273854	NM_004439.5	67	cGc/cAc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29665721	29665721	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	21	422	0	ENST00000358273.4:c.6820-1G>A		p.X2274_splice	ENST00000358273	NM_001042492.2	2274																																													NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108106509	108106511	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0004899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	22	365	0	ENST00000278616.4:c.444_446del	p.Ile149del	p.I149del	ENST00000278616	NM_000051.3	148	gaCATt/gat																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49033825	49033826	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0004899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	26	373	0	ENST00000267163.4:c.1963dup	p.Tyr655LeufsTer13	p.Y655Lfs*13	ENST00000267163	NM_000321.2	654	-/T																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	65	525	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	84	449	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	72	504	2	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	118	501	2	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2969703	2969703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	79	572	0	ENST00000396946.4:c.1576G>A	p.Gly526Arg	p.G526R	ENST00000396946	NM_032415.4	526	Ggg/Agg																																												NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	35	290	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																												NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187532710	187532710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1010116749		P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	57	622	0	ENST00000441802.2:c.9683del	p.Pro3228LeufsTer42	p.P3228Lfs*42	ENST00000441802	NM_005245.3	3228	cCt/ct																																												NEWRECORD																																		
MUTYH	0	MSKCC	GRCh37	1	45800116	45800116	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	99	594	0	ENST00000372115.3:c.104G>T	p.Gly35Val	p.G35V	ENST00000372115	NM_001048171.1	35	gGg/gTg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539921	187539921	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	38	482	1	ENST00000441802.2:c.7819T>C	p.Ser2607Pro	p.S2607P	ENST00000441802	NM_005245.3	2607	Tcc/Ccc																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131939646	131939646	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	37	498	0	ENST00000265335.6:c.2432A>G	p.Gln811Arg	p.Q811R	ENST00000265335		811	cAa/cGa																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26031979	26031979	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1409	131	880	1	ENST00000244661.2:c.310C>A	p.Leu104Ile	p.L104I	ENST00000244661	NM_003537.3	104	Ctc/Atc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30672462	30672462	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148215318		P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	147	595	4	ENST00000376406.3:c.4498G>A	p.Ala1500Thr	p.A1500T	ENST00000376406	NM_014641.2	1500	Gcc/Acc																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2968242	2968242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	99	596	0	ENST00000396946.4:c.1744C>T	p.Pro582Ser	p.P582S	ENST00000396946	NM_032415.4	582	Ccc/Tcc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145739437	145739437	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	75	489	0	ENST00000428558.2:c.1933A>G	p.Thr645Ala	p.T645A	ENST00000428558	NM_004260.3	645	Aca/Gca																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333957	70333957	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	51	517	0	ENST00000373644.4:c.1862A>G	p.Lys621Arg	p.K621R	ENST00000373644	NM_030625.2	621	aAa/aGa																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14028136	14028136	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	54	571	0	ENST00000311895.7:c.1190A>G	p.Glu397Gly	p.E397G	ENST00000311895	NM_005236.2	397	gAg/gGg																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50905143	50905143	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1266	88	660	0	ENST00000440232.2:c.425A>G	p.His142Arg	p.H142R	ENST00000440232	NM_002691.3	142	cAc/cGc																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123205083	123205083	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	76	745	0	ENST00000218089.9:c.2443T>C	p.Tyr815His	p.Y815H	ENST00000218089	NM_001042749.1	815	Tat/Cat																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41765621	41765621	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	91	647	2	ENST00000301178.4:c.2501del	p.Pro834LeufsTer122	p.P834Lfs*122	ENST00000301178	NM_021913.4	833	Ccc/cc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717713	89717714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0013631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	88	400	0	ENST00000371953.3:c.739_740dup	p.Leu247PhefsTer10	p.L247Ffs*10	ENST00000371953	NM_000314.4	246	-/TT																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720820	89720838	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTTGACAAAGCAAATAA	ATCTTGACAAAGCAAATAA	-			P-0013631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	13	182	0	ENST00000371953.3:c.972_990del	p.Asp324GlufsTer14	p.D324Efs*14	ENST00000371953	NM_000314.4	324	gATCTTGACAAAGCAAATAAa/ga																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135782702	135782702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	108	616	2	ENST00000298552.3:c.1319A>G	p.Asn440Ser	p.N440S	ENST00000298552	NM_001162426.1	440	aAt/aGt																																												NEWRECORD																																		
CRLF2	0	MSKCC	GRCh37	X	1314896	1314896	+	downstream_gene_variant	3'Flank	SNP	C	C	T			P-0013631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	97	504	0				ENST00000381566																																															NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	100	379	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	26	148	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	109	443	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937179	76937179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	39	1224	0	ENST00000373344.5:c.3569G>A	p.Arg1190Lys	p.R1190K	ENST00000373344	NM_000489.3	1190	aGa/aAa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47059128	47059129	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0000630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	173	521	0	ENST00000409792.3:c.7532dupA	p.Leu2512AlafsTer8	p.L2512Afs*8	ENST00000409792	NM_014159.6	2511	aag/aaAg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	26	459	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11189847	11189847	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	49	441	0	ENST00000361445.4:c.5662T>A	p.Phe1888Ile	p.F1888I	ENST00000361445	NM_004958.3	1888	Ttc/Atc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52441255	52441255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	66	472	0	ENST00000460680.1:c.515G>A	p.Ser172Asn	p.S172N	ENST00000460680	NM_004656.3	172	aGc/aAc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27056152	27056152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	131	389	1	ENST00000324856.7:c.1148C>T	p.Pro383Leu	p.P383L	ENST00000324856	NM_006015.4	383	cCa/cTa																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41727829	41727829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1422	92	677	1	ENST00000301178.4:c.454G>A	p.Ala152Thr	p.A152T	ENST00000301178	NM_021913.4	152	Gcc/Acc																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40761100	40761101	+	inframe_insertion	In_Frame_Ins	INS	-	-	ATGACTGTGGTCCACTGCAGGCAGCGT			P-0008522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	57	448	0	ENST00000392038.2:c.225_251dup	p.Arg76_Ile84dup	p.R76_I84dup	ENST00000392038	NM_001626.4	76	atc/atACGCTGCCTGCAGTGGACCACAGTCATc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246144	46246144	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	85	376	0	ENST00000334344.6:c.4240del	p.Arg1414GlufsTer8	p.R1414Efs*8	ENST00000334344	NM_152641.2	1413	gAa/ga																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183717	10183721	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGC	GCTGC	-			P-0008522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	161	443	0	ENST00000256474.2:c.189_193del	p.Arg64GlyfsTer66	p.R64Gfs*66	ENST00000256474	NM_000551.3	62	gtGCTGCgc/gtgc																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005897-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			555	129	511	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52712537	52712544	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAGCTC	AAGAGCTC	-			P-0005897-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			608	415	738	0	ENST00000394830.3:c.208_215del	p.Glu70HisfsTer2	p.E70Hfs*2	ENST00000394830	NM_018313.4	70	GAGCTCTTc/c																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2959064	2959064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005897-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	216	506	0	ENST00000396946.4:c.2452C>T	p.Arg818Trp	p.R818W	ENST00000396946	NM_032415.4	818	Cgg/Tgg																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18573874	18573874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0005897-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			438	106	454	0	ENST00000266497.5:c.2193-1G>C		p.X731_splice	ENST00000266497		731																																													NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28636112	28636112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005897-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			861	164	616	0	ENST00000241453.7:c.260C>T	p.Ala87Val	p.A87V	ENST00000241453	NM_004119.2	87	gCt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576918	7576919	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005897-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			673	237	541	0	ENST00000269305.4:c.927dup	p.Asn310GlnfsTer27	p.N310Qfs*27	ENST00000269305	NM_001126112.2	309	-/C																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	99	429	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	109	460	0	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134911502	134911502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	113	377	0	ENST00000398015.3:c.1967G>T	p.Gly656Val	p.G656V	ENST00000398015	NM_004441.4	656	gGg/gTg																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106157041	106157041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	127	514	2	ENST00000380013.4:c.1942G>T	p.Asp648Tyr	p.D648Y	ENST00000380013	NM_001127208.2	648	Gac/Tac																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80412539	80412539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	82	382	1	ENST00000286548.4:c.502G>T	p.Ala168Ser	p.A168S	ENST00000286548	NM_002072.3	168	Gct/Tct																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43606748	43606748	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	70	479	0	ENST00000355710.3:c.1357G>T	p.Gly453Trp	p.G453W	ENST00000355710	NM_020975.4	453	Ggg/Tgg																																												NEWRECORD																																		
FGF19	0	MSKCC	GRCh37	11	69514194	69514194	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	94	608	0	ENST00000294312.3:c.487T>G	p.Ser163Ala	p.S163A	ENST00000294312	NM_005117.2	163	Tct/Gct																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244764	46244764	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	48	450	0	ENST00000334344.6:c.2858C>G	p.Ala953Gly	p.A953G	ENST00000334344	NM_152641.2	953	gCt/gGt																																												NEWRECORD																																		
SRSF2	0	MSKCC	GRCh37	17	74732458	74732458	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	77	657	0	ENST00000359995.5:c.451T>C	p.Ser151Pro	p.S151P	ENST00000359995	NM_001195427.1	151	Tcc/Ccc																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48651678	48651678	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	150	550	0	ENST00000376670.3:c.844T>A	p.Cys282Ser	p.C282S	ENST00000376670	NM_002049.3	282	Tgc/Agc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133201391	133201394	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	GAAG	GAAG	AAAAA			P-0005567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	177	440	1	ENST00000320574.5:c.6750_6753delinsTTTTT	p.Met2252TyrfsTer52	p.M2252Yfs*52	ENST00000320574	NM_006231.2	2250	gtCTTC/gtTTTTT																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	46	380	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	124	191	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	19	317	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	116	283	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808979	1808979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	69	217	0	ENST00000260795.2:c.2411C>T	p.Ser804Leu	p.S804L	ENST00000260795		804	tCg/tTg																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63554665	63554665	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	112	197	0	ENST00000307078.5:c.74C>G	p.Pro25Arg	p.P25R	ENST00000307078	NM_004655.3	25	cCa/cGa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175465	112175466	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AA			P-0003130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	32	301	0	ENST00000257430.4:c.4174_4175insAA	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1392	tca/tAAca																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	155	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259563	89259563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	68	252	0	ENST00000336596.2:c.707A>G	p.Glu236Gly	p.E236G	ENST00000336596	NM_005233.5	236	gAg/gGg																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18439864	18439864	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0012065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	133	293	0	ENST00000266497.5:c.761+1G>A		p.X254_splice	ENST00000266497		254																																													NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610285	10610285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	172	429	0	ENST00000171111.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000171111	NM_203500.1	142	aCg/aTg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207090	1207091	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	AG			P-0012065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	156	423	0	ENST00000326873.7:c.179_180insGA	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	tac/tAGac																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	321	169	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	217	264	0	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627889	37627889	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	376	438	1	ENST00000447079.4:c.1804C>T	p.Gln602Ter	p.Q602*	ENST00000447079	NM_015083.1	602	Cag/Tag																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115117409	115117410	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	301	299	0	ENST00000257566.3:c.764dup	p.Arg256LysfsTer4	p.R256Kfs*4	ENST00000257566	NM_016569.3	255	gta/gtTa																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25990499	25990503	+	frameshift_variant	Frame_Shift_Del	DEL	AGTAA	AGTAA	-			P-0003522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	289	347	0	ENST00000435504.4:c.724_728del	p.Leu242ArgfsTer11	p.L242Rfs*11	ENST00000435504		242	TTACTa/a																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111499	8111500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	259	569	0	ENST00000346208.3:c.987dup	p.Arg330GlufsTer22	p.R330Efs*22	ENST00000346208		329	agg/aGgg																																												NEWRECORD																																		
SDHAF2	0	MSKCC	GRCh37	11	61205157	61205157	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144867876		P-0005469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	235	498	1	ENST00000301761.2:c.97C>T	p.Arg33Cys	p.R33C	ENST00000301761	NM_017841.2	33	Cgc/Tgc																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	90	281	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591924	48591924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	105	356	0	ENST00000342988.3:c.1087T>C	p.Cys363Arg	p.C363R	ENST00000342988	NM_005359.5	363	Tgt/Cgt																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139413225	139413225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	76	393	0	ENST00000277541.6:c.917G>C	p.Cys306Ser	p.C306S	ENST00000277541	NM_017617.3	306	tGc/tCc																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99465600	99465600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	97	239	0	ENST00000268035.6:c.2425G>A	p.Glu809Lys	p.E809K	ENST00000268035	NM_000875.3	809	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	63	254	1	ENST00000269305.4:c.520A>G	p.Arg174Gly	p.R174G	ENST00000269305	NM_001126112.2	174	Agg/Ggg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	168	426	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	53	512	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220443	1220443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	74	533	0	ENST00000326873.7:c.536C>T	p.Pro179Leu	p.P179L	ENST00000326873	NM_000455.4	179	cCg/cTg																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50906436	50906436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	203	547	1	ENST00000440232.2:c.1097C>A	p.Ala366Asp	p.A366D	ENST00000440232	NM_002691.3	366	gCc/gAc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47044967	47044967	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	71	271	0	ENST00000329236.7:c.2059C>T	p.Arg687Ter	p.R687*	ENST00000329236	NM_001204466.1	687	Cga/Tga																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56492898	56492899	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0004970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	20	194	0	ENST00000407977.2:c.39_40dup	p.Pro14ArgfsTer5	p.P14Rfs*5	ENST00000407977		14	ccc/cGCcc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	320	431	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	139	232	1	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259357	89259357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	75	596	0	ENST00000336596.2:c.501G>T	p.Glu167Asp	p.E167D	ENST00000336596	NM_005233.5	167	gaG/gaT																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431777	49431777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	191	317	0	ENST00000301067.7:c.9362A>G	p.Lys3121Arg	p.K3121R	ENST00000301067	NM_003482.3	3121	aAg/aGg																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	342	397	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53250046	53250047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	272	515	0	ENST00000375401.3:c.202dup	p.Arg68ProfsTer7	p.R68Pfs*7	ENST00000375401	NM_004187.3	68	cga/cCga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579408	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTG	-			P-0006912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	163	385	0	ENST00000269305.4:c.257_279delCACCAGCCCCCTCCTGGCCCCTG	p.Ala86ValfsTer55	p.A86Vfs*55	ENST00000269305	NM_001126112.2	86	gCACCAGCCCCCTCCTGGCCCCTG/g																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0008671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	26	458	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453138	140453139	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0008671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	31	356	0	ENST00000288602.6:c.1794_1796dupTAC	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	aca/acTACa																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	54	521	0	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	44	277	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	91	584	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	97	576	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435829	110435855	+	inframe_deletion	In_Frame_Del	DEL	GGCCGGCCCCGAAGGCGCTGGCCGCCT	GGCCGGCCCCGAAGGCGCTGGCCGCCT	-			P-0011558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	17	114	0	ENST00000375856.3:c.2546_2572del	p.Gln849_Gly857del	p.Q849_G857del	ENST00000375856	NM_003749.2	849	cAGGCGGCCAGCGCCTTCGGGGCCGGCCcc/ccc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0005069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	76	810	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49722905	49722906	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	GGG			P-0005069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	43	198	7	ENST00000449682.2:c.1419_1421dup	p.Pro474dup	p.P474dup	ENST00000449682	NM_020998.3	474	cca/ccCCCa																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64575533	64575533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	73	822	0	ENST00000337652.1:c.499G>T	p.Val167Phe	p.V167F	ENST00000337652	NM_130803.2	167	Gtt/Ttt																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116412044	116412047	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTAT	GTAT	AG			P-0005069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	142	476	0	ENST00000397752.3:c.3028+1_3028+4delinsAG		p.X1010_splice	ENST00000397752	NM_000245.2	1010																																													NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0005434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	363	534	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46240659	46240659	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	312	416	0	ENST00000334344.6:c.1519C>T	p.Gln507Ter	p.Q507*	ENST00000334344	NM_152641.2	507	Cag/Tag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	202	450	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49422859	49422859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	75	502	0	ENST00000301067.7:c.14236C>T	p.Arg4746Trp	p.R4746W	ENST00000301067	NM_003482.3	4746	Cgg/Tgg																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67663421	67663421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	470	612	0	ENST00000264010.4:c.1822G>T	p.Asp608Tyr	p.D608Y	ENST00000264010	NM_006565.3	608	Gat/Tat																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46125032	46125033	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	374	501	0	ENST00000334344.6:c.220dup	p.Glu74GlyfsTer11	p.E74Gfs*11	ENST00000334344	NM_152641.2	73	-/G																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	311	339	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55133805	55133805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	178	654	1	ENST00000257290.5:c.1018C>T	p.Arg340Trp	p.R340W	ENST00000257290	NM_006206.4	340	Cgg/Tgg																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	85	258	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1503	433	581	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2134448	2134448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1331	400	609	3	ENST00000219476.3:c.4225C>T	p.Arg1409Trp	p.R1409W	ENST00000219476	NM_000548.3	1409	Cgg/Tgg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002399-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	169	387	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	46	249	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	356	266	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7572971	7572971	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1496	128	697	0	ENST00000269305.4:c.1138del	p.His380IlefsTer42	p.H380Ifs*42	ENST00000269305	NM_001126112.2	380	Cat/at																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66356216	66356216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	54	410	0	ENST00000273854.3:c.1281G>A	p.Met427Ile	p.M427I	ENST00000273854	NM_004439.5	427	atG/atA																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187629238	187629238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	63	433	2	ENST00000441802.2:c.1744C>A	p.Leu582Ile	p.L582I	ENST00000441802	NM_005245.3	582	Cta/Ata																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8375945	8375945	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	70	416	0	ENST00000356435.5:c.4652T>C	p.Val1551Ala	p.V1551A	ENST00000356435		1551	gTg/gCg																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43620418	43620418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	131	256	0	ENST00000355710.3:c.3027G>A	p.Met1009Ile	p.M1009I	ENST00000355710	NM_020975.4	1009	atG/atA																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68856106	68856106	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	154	462	1	ENST00000261769.5:c.1914G>A	p.Trp638Ter	p.W638*	ENST00000261769	NM_004360.3	638	tgG/tgA																																												NEWRECORD																																		
CALR	0	MSKCC	GRCh37	19	13050034	13050034	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	203	770	2	ENST00000316448.5:c.178G>A	p.Glu60Lys	p.E60K	ENST00000316448	NM_004343.3	60	Gag/Aag																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30054182	30054182	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	72	416	0	ENST00000338641.4:c.604G>T	p.Glu202Ter	p.E202*	ENST00000338641	NM_000268.3	202	Gaa/Taa																																												NEWRECORD																																		
VTCN1	0	MSKCC	GRCh37	1	117699366	117699367	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	61	422	0	ENST00000369458.3:c.274dup	p.Glu92GlyfsTer4	p.E92Gfs*4	ENST00000369458	NM_024626.3	92	gag/gGag																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36653529	36653529	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0008718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	221	433	0	ENST00000244741.5:c.449del	p.Phe150SerfsTer8	p.F150Sfs*8	ENST00000244741	NM_000389.4	149	gaT/ga																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	109	387	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	56	193	3	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																												NEWRECORD																																		
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	145	320	2	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	254	238	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023716	27023716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	212	480	2	ENST00000324856.7:c.827del	p.Gly276GlufsTer87	p.G276Efs*87	ENST00000324856	NM_006015.4	274	atG/at																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	278	687	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	261	375	6	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133245024	133245024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	150	412	2	ENST00000320574.5:c.2091del	p.Leu698CysfsTer94	p.L698Cfs*94	ENST00000320574	NM_006231.2	697	ccC/cc																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435136	110435136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	166	305	0	ENST00000375856.3:c.3265G>C	p.Ala1089Pro	p.A1089P	ENST00000375856	NM_003749.2	1089	Gcc/Ccc																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31022309	31022309	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	199	472	0	ENST00000375687.4:c.1797del	p.Thr600ProfsTer103	p.T600Pfs*103	ENST00000375687	NM_015338.5	598	atC/at																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227660807	227660808	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	133	287	0	ENST00000305123.5:c.2645_2647dupAGC	p.Gln882dup	p.Q882dup	ENST00000305123	NM_005544.2	882	ccc/cAGCcc																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	269	587	0	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765148	66765149	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	26	240	0	ENST00000374690.3:c.170_172dupTGC	p.Leu57dup	p.L57dup	ENST00000374690	NM_000044.3	57	ttg/tTGCtg																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69229729	69229731	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	197	355	1	ENST00000462284.1:c.809_811del	p.Glu270del	p.E270del	ENST00000462284	NM_002392.5	269	GAA/-																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099309	27099310	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	190	385	0	ENST00000324856.7:c.3548dup	p.Asn1183LysfsTer10	p.N1183Kfs*10	ENST00000324856	NM_006015.4	1182	-/A																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434588	49434589	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	154	260	0	ENST00000301067.7:c.6964_6965del	p.Lys2322AspfsTer3	p.K2322Dfs*3	ENST00000301067	NM_003482.3	2322	AAg/g																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258889	16258889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	199	494	3	ENST00000375759.3:c.6158delA	p.Asn2053ThrfsTer11	p.N2053Tfs*11	ENST00000375759	NM_015001.2	2052	Aaa/aa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32936811	32936813	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	198	487	1	ENST00000380152.3:c.7961_7963del	p.Leu2654del	p.L2654del	ENST00000380152		2653	CTT/-																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31023465	31023465	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	214	383	0	ENST00000375687.4:c.2953del	p.Ile985SerfsTer8	p.I985Sfs*8	ENST00000375687	NM_015338.5	984	Aaa/aa																																												NEWRECORD																																		
RPS6KB2	0	MSKCC	GRCh37	11	67202570	67202570	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	156	448	0	ENST00000312629.5:c.1382del	p.Pro461LeufsTer33	p.P461Lfs*33	ENST00000312629	NM_003952.2	460	gCc/gc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720857	89720862	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTTC	CTTTTC	TT			P-0007675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	308	197	0	ENST00000371953.3:c.1008_1013delinsTT	p.Ser338GlnfsTer5	p.S338Qfs*5	ENST00000371953	NM_000314.4	336	taCTTTTCt/taTTt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	314	400	2	ENST00000301067.7:c.15536G>A	p.Arg5179His	p.R5179H	ENST00000301067	NM_003482.3	5179	cGt/cAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	410	491	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720737	89720737	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	25	70	0	ENST00000371953.3:c.888T>A	p.Cys296Ter	p.C296*	ENST00000371953	NM_000314.4	296	tgT/tgA																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89693002	89693003	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	186	227	0	ENST00000371953.3:c.491dupA	p.Val166SerfsTer14	p.V166Sfs*14	ENST00000371953	NM_000314.4	162	-/A																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589584	67589591	+	protein_altering_variant	In_Frame_Del	DEL	ACATGAAT	ACATGAAT	TC			P-0004544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	648	354	0	ENST00000274335.5:c.1347_1354delinsTC	p.Leu449_Tyr452delinsPheHis	p.L449_Y452delinsFH	ENST00000274335		449	ttACATGAATat/ttTCat																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32166723	32166724	+	missense_variant	Missense_Mutation	DNP	GC	GC	AT			P-0004544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	236	387	0	ENST00000375023.3:c.4514_4515delinsAT	p.Gly1505Asp	p.G1505D	ENST00000375023	NM_004557.3	1505	gGC/gAT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	60	281	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	129	272	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175191	112175192	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	64	176	0	ENST00000257430.4:c.3901dup	p.Thr1301AsnfsTer14	p.T1301Nfs*14	ENST00000257430	NM_000038.5	1300	-/A																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	73	379	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241667364	241667364	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	57	485	0	ENST00000366560.3:c.1086A>T	p.Glu362Asp	p.E362D	ENST00000366560	NM_000143.3	362	gaA/gaT																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	58	261	1	ENST00000281708.4:c.1393C>A	p.Arg465Ser	p.R465S	ENST00000281708	NM_033632.3	465	Cgt/Agt																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139391848	139391848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	57	304	1	ENST00000277541.6:c.6343G>A	p.Glu2115Lys	p.E2115K	ENST00000277541	NM_017617.3	2115	Gag/Aag																																												NEWRECORD																																		
PHOX2B	0	MSKCC	GRCh37	4	41750420	41750420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	74	269	0	ENST00000226382.2:c.208del	p.Leu70SerfsTer64	p.L70Sfs*64	ENST00000226382	NM_003924.3	70	Ctc/tc																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457270	67457270	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TTCCGA			P-0003582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	107	231	0	ENST00000327367.4:c.244delinsTTCCGA	p.Gly82PhefsTer36	p.G82Ffs*36	ENST00000327367	NM_005902.3	82	Ggg/TTCCGAgg																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	77	569	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41280768	41280768	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	18	482	0	ENST00000349496.5:c.2281G>C	p.Asp761His	p.D761H	ENST00000349496	NM_001904.3	761	Gac/Cac																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259173	89259173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	17	475	1	ENST00000336596.2:c.317G>A	p.Cys106Tyr	p.C106Y	ENST00000336596	NM_005233.5	106	tGc/tAc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142279194	142279194	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	18	639	0	ENST00000350721.4:c.1452T>A	p.Asn484Lys	p.N484K	ENST00000350721	NM_001184.3	484	aaT/aaA																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106157404	106157404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	27	548	0	ENST00000380013.4:c.2305C>T	p.Gln769Ter	p.Q769*	ENST00000380013	NM_001127208.2	769	Cag/Tag																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874751	151874751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	19	395	0	ENST00000262189.6:c.7787G>T	p.Arg2596Leu	p.R2596L	ENST00000262189	NM_170606.2	2596	cGg/cTg																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103498619	103498619	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	26	582	0	ENST00000355739.4:c.3G>A	p.Met1?	p.M1?	ENST00000355739	NM_000123.3	1	atG/atA																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9892293	9892293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	10	489	0	ENST00000330684.3:c.2197G>T	p.Ala733Ser	p.A733S	ENST00000330684	NM_001134407.1	733	Gca/Tca																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578197	7578197	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	75	766	0	ENST00000269305.4:c.652G>T	p.Val218Leu	p.V218L	ENST00000269305	NM_001126112.2	218	Gtg/Ttg																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18271779	18271779	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	29	509	0	ENST00000222254.8:c.466G>T	p.Asp156Tyr	p.D156Y	ENST00000222254	NM_005027.3	156	Gac/Tac																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50910642	50910642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	28	893	1	ENST00000440232.2:c.1745C>G	p.Thr582Arg	p.T582R	ENST00000440232	NM_002691.3	582	aCg/aGg																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31379489	31379489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	28	612	0	ENST00000328111.2:c.896G>T	p.Arg299Leu	p.R299L	ENST00000328111	NM_006892.3	299	cGa/cTa																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40733343	40733343	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	10	223	0	ENST00000373198.4:c.3463G>C	p.Val1155Leu	p.V1155L	ENST00000373198	NM_133170.3	1155	Gtg/Ctg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70341493	70341493	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	35	847	1	ENST00000374080.3:c.928G>T	p.Asp310Tyr	p.D310Y	ENST00000374080		310	Gat/Tat																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	394979	394980	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	27	312	0	ENST00000380956.4:c.376dup	p.Arg126LysfsTer5	p.R126Kfs*5	ENST00000380956	NM_001195286.1	125	-/A																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	117	599	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0014654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	192	684	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	86	512	1	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47162397	47162398	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0014654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	137	411	0	ENST00000409792.3:c.3728_3729delTA	p.Ile1243ThrfsTer32	p.I1243Tfs*32	ENST00000409792	NM_014159.6	1243	aTA/a																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142275280	142275280	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	81	811	0	ENST00000350721.4:c.2023T>A	p.Phe675Ile	p.F675I	ENST00000350721	NM_001184.3	675	Ttt/Att																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1807509	1807509	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	83	770	1	ENST00000260795.2:c.1678A>T	p.Lys560Ter	p.K560*	ENST00000260795		560	Aag/Tag																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178148	56178160	+	frameshift_variant	Frame_Shift_Del	DEL	AAACTTTCCCCAG	AAACTTTCCCCAG	GAC			P-0014654-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	76	561	1	ENST00000399503.3:c.3121_3133delAAACTTTCCCCAGinsGAC	p.Lys1041AspfsTer38	p.K1041Dfs*38	ENST00000399503	NM_005921.1	1041	AAACTTTCCCCAGtc/GACtc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	35	155	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	144	496	0	ENST00000368323.3:c.270G>C	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atC																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023895	27023895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	13	98	0	ENST00000324856.7:c.1001C>G	p.Ser334Trp	p.S334W	ENST00000324856	NM_006015.4	334	tCg/tGg																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16086151	16086151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	101	309	0	ENST00000281043.3:c.1327G>A	p.Glu443Lys	p.E443K	ENST00000281043	NM_005378.4	443	Gaa/Aaa																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48026889	48026889	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	106	541	0	ENST00000234420.5:c.1767T>A	p.Tyr589Ter	p.Y589*	ENST00000234420	NM_000179.2	589	taT/taA																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49397738	49397738	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	58	734	0	ENST00000418115.1:c.486G>C	p.Lys162Asn	p.K162N	ENST00000418115	NM_001664.2	162	aaG/aaC																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49397815	49397815	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	57	535	0	ENST00000418115.1:c.409G>A	p.Glu137Lys	p.E137K	ENST00000418115	NM_001664.2	137	Gag/Aag																																												NEWRECORD																																		
SOX2	0	MSKCC	GRCh37	3	181430425	181430425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	55	604	0	ENST00000325404.1:c.277G>A	p.Glu93Lys	p.E93K	ENST00000325404	NM_003106.3	93	Gag/Aag																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66218774	66218774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	40	613	0	ENST00000273854.3:c.2284G>C	p.Asp762His	p.D762H	ENST00000273854	NM_004439.5	762	Gat/Cat																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187524560	187524560	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	90	495	0	ENST00000441802.2:c.11120C>G	p.Ser3707Ter	p.S3707*	ENST00000441802	NM_005245.3	3707	tCa/tGa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56167795	56167795	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	77	457	0	ENST00000399503.3:c.1360G>C	p.Glu454Gln	p.E454Q	ENST00000399503	NM_005921.1	454	Gaa/Caa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56168473	56168473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	30	311	0	ENST00000399503.3:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000399503	NM_005921.1	477	Gaa/Aaa																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157502230	157502230	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	32	321	0	ENST00000346085.5:c.3263C>G	p.Ser1088Ter	p.S1088*	ENST00000346085	NM_020732.3	1088	tCa/tGa																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110248205	110248205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	30	234	0	ENST00000374672.4:c.1267G>A	p.Glu423Lys	p.E423K	ENST00000374672	NM_004235.4	423	Gag/Aag																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50492767	50492767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	151	586	0	ENST00000394963.4:c.1532G>A	p.Gly511Glu	p.G511E	ENST00000394963	NM_003076.4	511	gGa/gAa																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14041512	14041512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	42	319	0	ENST00000311895.7:c.2059G>C	p.Asp687His	p.D687H	ENST00000311895	NM_005236.2	687	Gat/Cat																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37884134	37884134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	65	611	0	ENST00000269571.5:c.3605G>T	p.Gly1202Val	p.G1202V	ENST00000269571		1202	gGa/gTa																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41199678	41199678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	71	602	0	ENST00000357654.3:c.5449G>A	p.Glu1817Lys	p.E1817K	ENST00000357654	NM_007294.3	1817	Gag/Aag																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32912752	32912831	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTGAGACTTCTGATACATTTTTTCAGACTGCAAGTGGGAAAAATATTAGTGTCGCCAAAGAGTCATTTAATAAAATTG	TTTTGAGACTTCTGATACATTTTTTCAGACTGCAAGTGGGAAAAATATTAGTGTCGCCAAAGAGTCATTTAATAAAATTG	-			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	46	970	0	ENST00000380152.3:c.4261_4340del	p.Phe1421LysfsTer4	p.F1421Kfs*4	ENST00000380152		1420	gaTTTTGAGACTTCTGATACATTTTTTCAGACTGCAAGTGGGAAAAATATTAGTGTCGCCAAAGAGTCATTTAATAAAATTGta/gata																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115953	8115954	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	73	264	0	ENST00000346208.3:c.1301_1302dup	p.Pro435ThrfsTer41	p.P435Tfs*41	ENST00000346208		433	-/CA																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061447	38061448	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	52	286	0	ENST00000250448.2:c.541dup	p.Met181AsnfsTer46	p.M181Nfs*46	ENST00000250448	NM_004496.3	181	atg/aAtg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44922793	44922802	+	frameshift_variant	Frame_Shift_Del	DEL	AGCGTCTCTC	AGCGTCTCTC	-			P-0004519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	154	329	0	ENST00000377967.4:c.1657_1666del	p.Val553LeufsTer37	p.V553Lfs*37	ENST00000377967	NM_021140.2	552	AGCGTCTCTCag/ag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577061	7577062	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	88	892	0	ENST00000269305.4:c.876dup	p.Gly293ArgfsTer13	p.G293Rfs*13	ENST00000269305	NM_001126112.2	292	-/A																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37657668	37657668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	61	617	0	ENST00000447079.4:c.2585G>A	p.Cys862Tyr	p.C862Y	ENST00000447079	NM_015083.1	862	tGt/tAt																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2222530	2222530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	29	1242	1	ENST00000398665.3:c.3362C>T	p.Ser1121Leu	p.S1121L	ENST00000398665	NM_032482.2	1121	tCg/tTg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174757	112174757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	42	315	0	ENST00000257430.4:c.3466G>T	p.Glu1156Ter	p.E1156*	ENST00000257430	NM_000038.5	1156	Gaa/Taa																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0014181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	163	703	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																												NEWRECORD																																		
MLL4	0	MSKCC	GRCh37	19	36219676	36219676	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014181-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	64	861	0	ENST00000222270.7:c.4573G>A	p.Gly1525Arg	p.G1525R	ENST00000222270	NM_014727.1	1525	Gga/Aga																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	83	487	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0002960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	117	451	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71008412	71008412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			773	108	570	0	ENST00000318789.4:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000318789	NM_032682.5	674	Gag/Aag																																												NEWRECORD																																		
FOXL2	0	MSKCC	GRCh37	3	138664942	138664942	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	21	110	0	ENST00000330315.3:c.623A>G	p.Gln208Arg	p.Q208R	ENST00000330315	NM_023067.3	208	cAg/cGg																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81386537	81386537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	42	446	0	ENST00000222390.5:c.450G>T	p.Gln150His	p.Q150H	ENST00000222390	NM_000601.4	150	caG/caT																																												NEWRECORD																																		
NFE2L2	4780	MSKCC	GRCh37	2	178098894	178098895	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	67	578	0	ENST00000397062.3:c.150dup	p.Gln51ThrfsTer5	p.Q51Tfs*5	ENST00000397062	NM_006164.4	50	-/A																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56436028	56436028	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002960-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	69	267	0	ENST00000407977.2:c.1109del	p.Pro370HisfsTer49	p.P370Hfs*49	ENST00000407977		370	cCa/ca																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36171657	36171657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	156	325	0	ENST00000300305.3:c.908C>T	p.Ser303Leu	p.S303L	ENST00000300305		303	tCa/tTa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	239	488	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	474	861	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	219	476	1	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115256527	115256528	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	411	511	0	ENST00000369535.4:c.183_184delinsTA	p.Gln61_Glu62delinsHisLys	p.Q61_E62delinsHK	ENST00000369535	NM_002524.4	61	caAGaa/caTAaa																																												NEWRECORD																																		
INPPL1	0	MSKCC	GRCh37	11	71948260	71948260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	418	859	2	ENST00000298229.2:c.2972G>A	p.Gly991Glu	p.G991E	ENST00000298229	NM_001567.3	991	gGg/gAg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49030363	49030363	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	135	187	0	ENST00000267163.4:c.1838C>T	p.Pro613Leu	p.P613L	ENST00000267163	NM_000321.2	613	cCa/cTa																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103518091	103518091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			223	154	304	0	ENST00000355739.4:c.2029C>T	p.Pro677Ser	p.P677S	ENST00000355739	NM_000123.3	677	Ccc/Tcc																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91310221	91310221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	131	327	0	ENST00000355112.3:c.2275A>G	p.Ile759Val	p.I759V	ENST00000355112	NM_000057.2	759	Atc/Gtc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991914	72991914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	205	410	0	ENST00000268489.5:c.2131C>T	p.Pro711Ser	p.P711S	ENST00000268489	NM_006885.3	711	Ccc/Tcc																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18273919	18273919	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	251	461	1	ENST00000222254.8:c.1252G>T	p.Asp418Tyr	p.D418Y	ENST00000222254	NM_005027.3	418	Gac/Tac																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12645687	12645687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			330	133	235	0	ENST00000251849.4:c.782C>T	p.Pro261Leu	p.P261L	ENST00000251849	NM_002880.3	261	cCt/cTt																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49933434	49933434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	221	556	0	ENST00000296474.3:c.2756C>T	p.Pro919Leu	p.P919L	ENST00000296474	NM_002447.2	919	cCc/cTc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539213	187539213	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	167	333	0	ENST00000441802.2:c.8527C>T	p.Gln2843Ter	p.Q2843*	ENST00000441802	NM_005245.3	2843	Caa/Taa																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35875669	35875669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	191	343	0	ENST00000303115.3:c.856C>T	p.Leu286Phe	p.L286F	ENST00000303115	NM_002185.3	286	Ctt/Ttt																																												NEWRECORD																																		
HIST1H3C	0	MSKCC	GRCh37	6	26045967	26045968	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	160	282	0	ENST00000540144.1:c.331_332delTG	p.Cys111ArgfsTer5	p.C111Rfs*5	ENST00000540144	NM_003531.2	110	cTG/c																																												NEWRECORD																																		
HIST1H3C	0	MSKCC	GRCh37	6	26046048	26046048	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	139	184	0	ENST00000540144.1:c.410A>C	p.Ter137SerextTer8	p.*137Sext*8	ENST00000540144	NM_003531.2	137	tAa/tCa																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2966415	2966415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	306	657	0	ENST00000396946.4:c.1765G>A	p.Glu589Lys	p.E589K	ENST00000396946	NM_032415.4	589	Gaa/Aaa																																												NEWRECORD																																		
AGO2	0	MSKCC	GRCh37	8	141595332	141595332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	317	708	0	ENST00000220592.5:c.101C>T	p.Ser34Phe	p.S34F	ENST00000220592	NM_012154.3	34	tCc/tTc																																												NEWRECORD																																		
MAPKAP1	0	MSKCC	GRCh37	9	128347951	128347951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014556-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	331	590	0	ENST00000265960.3:c.554C>T	p.Ser185Leu	p.S185L	ENST00000265960	NM_001006617.1	185	tCg/tTg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	269	287	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	327	293	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	544	272	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187541541	187541541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	240	361	0	ENST00000441802.2:c.6199G>A	p.Val2067Met	p.V2067M	ENST00000441802	NM_005245.3	2067	Gtg/Atg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170864	112170864	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	357	332	0	ENST00000257430.4:c.1958+2T>C		p.X653_splice	ENST00000257430	NM_000038.5	653																																													NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99460065	99460065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	508	332	1	ENST00000268035.6:c.2161G>A	p.Val721Ile	p.V721I	ENST00000268035	NM_000875.3	721	Gtc/Atc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42794730	42794730	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143090600		P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	101	206	0	ENST00000575354.2:c.1810G>A	p.Glu604Lys	p.E604K	ENST00000575354	NM_015125.3	604	Gaa/Aaa																																												NEWRECORD																																		
BBC3	0	MSKCC	GRCh37	19	47731419	47731419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	41	25	0	ENST00000449228.1:c.373G>A	p.Gly125Arg	p.G125R	ENST00000449228	NM_001127240.2	125	Gga/Aga																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76939921	76939922	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGTCCAACAAAGGCTCTGGGTGACGAATGT			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	335	288	0	ENST00000373344.5:c.826_827insACATTCGTCACCCAGAGCCTTTGTTGGACT	p.Asp275_Leu276insTyrIleArgHisProGluProLeuLeuAsp	p.D275_L276insYIRHPEPLLD	ENST00000373344	NM_000489.3	276	ttg/tACATTCGTCACCCAGAGCCTTTGTTGGACTtg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187534433	187534434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	165	321	0	ENST00000441802.2:c.9292dup	p.Arg3098LysfsTer24	p.R3098Kfs*24	ENST00000441802	NM_005245.3	3098	agg/aAgg																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176638157	176638158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	155	227	0	ENST00000439151.2:c.2758dup	p.Ser920LysfsTer2	p.S920Kfs*2	ENST00000439151	NM_022455.4	919	-/A																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50467799	50467799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	90	498	0	ENST00000331340.3:c.1034G>T	p.Ser345Ile	p.S345I	ENST00000331340	NM_006060.4	345	aGc/aTc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27102131	27102131	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	156	765	0	ENST00000324856.7:c.5059del	p.Ala1687HisfsTer2	p.A1687Hfs*2	ENST00000324856	NM_006015.4	1686	tGg/tg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151879243	151879244	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	117	557	0	ENST00000262189.6:c.5701dup	p.Met1901AsnfsTer13	p.M1901Nfs*13	ENST00000262189	NM_170606.2	1901	atg/aAtg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	361	536	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64575523	64575523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	231	483	0	ENST00000337652.1:c.509G>A	p.Cys170Tyr	p.C170Y	ENST00000337652	NM_130803.2	170	tGc/tAc																																												NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	44	772	1	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	11	244	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	56	889	2	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180053022	180053023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	23	549	2	ENST00000261937.6:c.1267dupC	p.Gln423ProfsTer4	p.Q423Pfs*4	ENST00000261937	NM_182925.4	423	cag/cCag																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131931471	131931471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	29	426	0	ENST00000265335.6:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000265335		726	Cgt/Tgt																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206667302	206667302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	53	659	2	ENST00000367120.3:c.2095G>T	p.Asp699Tyr	p.D699Y	ENST00000367120	NM_014002.3	699	Gac/Tac																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55144061	55144061	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	37	618	0	ENST00000257290.5:c.1892-2A>G		p.X631_splice	ENST00000257290	NM_006206.4	631																																													NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149457779	149457779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	26	423	0	ENST00000286301.3:c.625C>T	p.Pro209Ser	p.P209S	ENST00000286301	NM_005211.3	209	Cct/Tct																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180048207	180048207	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	35	589	0	ENST00000261937.6:c.2066T>C	p.Val689Ala	p.V689A	ENST00000261937	NM_182925.4	689	gTg/gCg																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148512041	148512041	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	31	543	0	ENST00000320356.2:c.1637A>T	p.Asn546Ile	p.N546I	ENST00000320356	NM_004456.4	546	aAt/aTt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344648	118344648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	34	709	2	ENST00000534358.1:c.2774C>A	p.Ser925Tyr	p.S925Y	ENST00000534358	NM_005933.3	925	tCt/tAt																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95595888	95595888	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	47	736	0	ENST00000343455.3:c.655T>G	p.Leu219Val	p.L219V	ENST00000343455	NM_177438.2	219	Ttg/Gtg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41961850	41961850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	51	1077	0	ENST00000219905.7:c.758C>A	p.Pro253Gln	p.P253Q	ENST00000219905	NM_001164273.1	253	cCa/cAa																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	347881	347881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	53	1028	1	ENST00000262320.3:c.1625G>A	p.Ser542Asn	p.S542N	ENST00000262320	NM_003502.3	542	aGc/aAc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72829529	72829529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	57	1138	0	ENST00000268489.5:c.7052G>A	p.Cys2351Tyr	p.C2351Y	ENST00000268489	NM_006885.3	2351	tGt/tAt																																												NEWRECORD																																		
CCNE1	898	MSKCC	GRCh37	19	30308419	30308419	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	36	744	0	ENST00000262643.3:c.433C>T	p.Arg145Ter	p.R145*	ENST00000262643	NM_001238.2	145	Cga/Tga																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50910600	50910600	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	46	889	0	ENST00000440232.2:c.1703T>C	p.Leu568Pro	p.L568P	ENST00000440232	NM_002691.3	568	cTg/cCg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52719329	52719329	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	26	593	0	ENST00000322088.6:c.993+2T>C		p.X331_splice	ENST00000322088	NM_014225.5	331																																													NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53222648	53222648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	51	338	0	ENST00000375401.3:c.4288G>T	p.Asp1430Tyr	p.D1430Y	ENST00000375401	NM_004187.3	1430	Gac/Tac																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103524640	103524640	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	45	769	0	ENST00000355739.4:c.2774del	p.Pro925LeufsTer57	p.P925Lfs*57	ENST00000355739	NM_000123.3	924	aCc/ac																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157100302	157100302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	31	338	0	ENST00000346085.5:c.1243delG	p.Ala415ProfsTer15	p.A415Pfs*15	ENST00000346085	NM_020732.3	413	tcG/tc																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53228329	53228330	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	33	400	0	ENST00000375401.3:c.2072_2073del	p.Glu691GlyfsTer2	p.E691Gfs*2	ENST00000375401	NM_004187.3	691	gAG/g																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10271068	10271068	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	41	718	1	ENST00000340748.4:c.987delC	p.Glu331AsnfsTer14	p.E331Nfs*14	ENST00000340748		329	ccC/cc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252856	36252857	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	105	280	0	ENST00000300305.3:c.505dupA	p.Arg169LysfsTer44	p.R169Kfs*44	ENST00000300305		169	aga/aAga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	155	437	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881002	37881003	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCTCCCCA			P-0012081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	179	483	0	ENST00000269571.5:c.2332_2340dupGGCTCCCCA	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	-/GGCTCCCCA																																												NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0012081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	110	318	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	378	497	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9782651	9782651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	83	583	0	ENST00000377346.4:c.2413G>A	p.Gly805Arg	p.G805R	ENST00000377346	NM_005026.3	805	Ggg/Agg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467434	66467434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	120	362	0	ENST00000273854.3:c.835G>A	p.Glu279Lys	p.E279K	ENST00000273854	NM_004439.5	279	Gaa/Aaa																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591113	67591113	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	139	378	0	ENST00000274335.5:c.1706A>G	p.Asp569Gly	p.D569G	ENST00000274335		569	gAc/gGc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29005380	29005380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	59	453	0	ENST00000282397.4:c.881G>T	p.Ser294Ile	p.S294I	ENST00000282397	NM_002019.4	294	aGt/aTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577521	7577521	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	357	524	0	ENST00000269305.4:c.760A>C	p.Ile254Leu	p.I254L	ENST00000269305	NM_001126112.2	254	Atc/Ctc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29670111	29670111	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	157	491	0	ENST00000358273.4:c.7147A>T	p.Asn2383Tyr	p.N2383Y	ENST00000358273	NM_001042492.2	2383	Aac/Tac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577500	7577514	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TGGAGTCTTCCAGTG	TGGAGTCTTCCAGTG	-			P-0006920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	341	473	0	ENST00000269305.4:c.767_781del	p.Thr256_Ser260del	p.T256_S260del	ENST00000269305	NM_001126112.2	256	aCACTGGAAGACTCCAgt/agt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	419	549	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138417865	138417865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	282	364	0	ENST00000289153.2:c.1654G>A	p.Glu552Lys	p.E552K	ENST00000289153	NM_006219.2	552	Gaa/Aaa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212576822	212576822	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	244	355	0	ENST00000342788.4:c.1077T>A	p.Cys359Ter	p.C359*	ENST00000342788	NM_005235.2	359	tgT/tgA																																												NEWRECORD																																		
RYBP	0	MSKCC	GRCh37	3	72427568	72427568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	140	323	0	ENST00000477973.2:c.920G>A	p.Asp308Asn	p.D308N	ENST00000477973	NM_012234.5	308	Gac/Aac																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114710597	114710597	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	513	651	0	ENST00000543371.1:c.82G>T	p.Glu28Ter	p.E28*	ENST00000543371	NM_001198531.1	28	Gag/Tag																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3824628	3824628	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1607	171	457	1	ENST00000262367.5:c.2225G>T	p.Arg742Leu	p.R742L	ENST00000262367	NM_004380.2	742	cGt/cTt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	301	328	0	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173472	112173473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	611	436	0	ENST00000257430.4:c.2183dup	p.Asn728LysfsTer6	p.N728Kfs*6	ENST00000257430	NM_000038.5	727	-/A																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57861837	57861837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	448	996	2	ENST00000228682.2:c.1138C>T	p.Arg380Ter	p.R380*	ENST00000228682	NM_005269.2	380	Cga/Tga																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115965	8115966	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0012546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	91	264	0	ENST00000346208.3:c.1312_1313dup	p.Met438IlefsTer38	p.M438Ifs*38	ENST00000346208		437	-/AT																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	176	304	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63850702	63850703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGAAAAAAATAGAAGGGTATCAGGAATTTTC			P-0004208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	51	393	0	ENST00000279873.7:c.1483_1513dup	p.Ala505GlufsTer33	p.A505Efs*33	ENST00000279873	NM_032199.2	494	aag/aAGAAAAAAATAGAAGGGTATCAGGAATTTTCag																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	252	410	1	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	575	542	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	130	187	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	195	175	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	211	414	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
ETV1	2115	MSKCC	GRCh37	7	13975473	13975473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	148	305	0	ENST00000405192.2:c.414del	p.Thr139HisfsTer116	p.T139Hfs*116	ENST00000405192	NM_001163147.1	138	ccC/cc																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	313	478	0	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938230	76938230	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	270	667	2	ENST00000373344.5:c.2518delA	p.Arg840GlufsTer29	p.R840Efs*29	ENST00000373344	NM_000489.3	840	Aga/ga																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9779983	9779984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	39	529	1	ENST00000377346.4:c.1251dup	p.Ile418HisfsTer10	p.I418Hfs*10	ENST00000377346	NM_005026.3	416	tgc/tgCc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107010	27107010	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	234	333	0	ENST00000324856.7:c.6621del	p.Gln2207HisfsTer24	p.Q2207Hfs*24	ENST00000324856	NM_006015.4	2207	caG/ca																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78432609	78432609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	170	399	0	ENST00000370768.2:c.374G>A	p.Arg125His	p.R125H	ENST00000370768	NM_003902.3	125	cGc/cAc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120468274	120468274	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	171	272	0	ENST00000256646.2:c.4165T>C	p.Cys1389Arg	p.C1389R	ENST00000256646	NM_024408.3	1389	Tgc/Cgc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89653828	89653829	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	445	399	0	ENST00000371953.3:c.127dup	p.Glu43GlyfsTer9	p.E43Gfs*9	ENST00000371953	NM_000314.4	42	-/G																																												NEWRECORD																																		
CCND1	0	MSKCC	GRCh37	11	69466031	69466031	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	294	467	0	ENST00000227507.2:c.869T>G	p.Val290Gly	p.V290G	ENST00000227507	NM_053056.2	290	gTg/gGg																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	442811	442811	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	56	400	0	ENST00000399788.2:c.1495del	p.Glu499SerfsTer19	p.E499Sfs*19	ENST00000399788	NM_001042603.1	499	Gag/ag																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115118831	115118831	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	116	521	0	ENST00000257566.3:c.510G>A	p.Trp170Ter	p.W170*	ENST00000257566	NM_016569.3	170	tgG/tgA																																												NEWRECORD																																		
RAB35	0	MSKCC	GRCh37	12	120541730	120541730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	532	889	0	ENST00000229340.5:c.127G>A	p.Val43Met	p.V43M	ENST00000229340	NM_006861.6	43	Gtg/Atg																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91304375	91304375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	31	375	0	ENST00000355112.3:c.1772G>T	p.Arg591Leu	p.R591L	ENST00000355112	NM_000057.2	591	cGg/cTg																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91347446	91347446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	309	505	0	ENST00000355112.3:c.3608C>T	p.Ala1203Val	p.A1203V	ENST00000355112	NM_000057.2	1203	gCg/gTg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2103442	2103442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	193	325	0	ENST00000219476.3:c.325G>A	p.Val109Met	p.V109M	ENST00000219476	NM_000548.3	109	Gtg/Atg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89349754	89349755	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	601	1139	0	ENST00000301030.4:c.3195dup	p.His1066ThrfsTer2	p.H1066Tfs*2	ENST00000301030	NM_001256183.1	1065	-/A																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227660999	227660999	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	192	447	0	ENST00000305123.5:c.2456del	p.Gly819AspfsTer124	p.G819Dfs*124	ENST00000305123	NM_005544.2	819	gGa/ga																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412377	139412377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	180	346	0	ENST00000277541.6:c.1268G>A	p.Cys423Tyr	p.C423Y	ENST00000277541	NM_017617.3	423	tGc/tAc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70355039	70355039	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	411	871	1	ENST00000374080.3:c.4961A>T	p.Gln1654Leu	p.Q1654L	ENST00000374080		1654	cAg/cTg																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0014948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			796	175	609	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112157657	112157658	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014948-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	84	399	0	ENST00000257430.4:c.1378dup	p.Glu460GlyfsTer4	p.E460Gfs*4	ENST00000257430	NM_000038.5	459	-/G																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	128	250	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	117	199	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27089706	27089706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	105	213	0	ENST00000324856.7:c.2666delG	p.Gly889AlafsTer2	p.G889Afs*2	ENST00000324856	NM_006015.4	888	Ggg/gg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	122	318	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55564642	55564642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	90	248	0	ENST00000288135.5:c.530G>A	p.Arg177His	p.R177H	ENST00000288135	NM_000222.2	177	cGc/cAc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5223203	5223203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	66	174	0	ENST00000357368.4:c.2600G>A	p.Arg867His	p.R867H	ENST00000357368	NM_002850.3	867	cGc/cAc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	76	230	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15297981	15297981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	118	278	0	ENST00000263388.2:c.1775G>A	p.Arg592His	p.R592H	ENST00000263388	NM_000435.2	592	cGc/cAc																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	100	280	1	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	112	246	0	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	133	374	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	73	212	0	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94209523	94209523	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	111	291	0	ENST00000323929.3:c.591del	p.Val198Ter	p.V198*	ENST00000323929	NM_005591.3	197	aaA/aa																																												NEWRECORD																																		
TNFRSF14	0	MSKCC	GRCh37	1	2491274	2491274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	86	241	0	ENST00000355716.4:c.317G>A	p.Arg106His	p.R106H	ENST00000355716	NM_003820.2	106	cGc/cAc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16264445	16264445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	122	293	0	ENST00000375759.3:c.10648G>A	p.Ala3550Thr	p.A3550T	ENST00000375759	NM_015001.2	3550	Gcc/Acc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099430	27099430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	103	314	0	ENST00000324856.7:c.3667C>T	p.Arg1223Cys	p.R1223C	ENST00000324856	NM_006015.4	1223	Cgc/Tgc																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241669408	241669408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	86	272	0	ENST00000366560.3:c.799C>T	p.Pro267Ser	p.P267S	ENST00000366560	NM_000143.3	267	Cca/Tca																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30142885	30142885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	57	230	0	ENST00000389048.3:c.641G>A	p.Arg214His	p.R214H	ENST00000389048	NM_004304.4	214	cGc/cAc																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47641544	47641544	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	244	168	0	ENST00000233146.2:c.929T>G	p.Leu310Arg	p.L310R	ENST00000233146	NM_000251.2	310	cTt/cGt																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227661857	227661857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	66	176	0	ENST00000305123.5:c.1598C>T	p.Thr533Ile	p.T533I	ENST00000305123	NM_005544.2	533	aCc/aTc																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185165687	185165687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	112	216	2	ENST00000265026.3:c.962C>T	p.Ala321Val	p.A321V	ENST00000265026	NM_004721.4	321	gCg/gTg																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55138664	55138664	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	88	223	1	ENST00000257290.5:c.1341G>A	p.Trp447Ter	p.W447*	ENST00000257290	NM_006206.4	447	tgG/tgA																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66197781	66197781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	76	271	0	ENST00000273854.3:c.2918G>T	p.Trp973Leu	p.W973L	ENST00000273854	NM_004439.5	973	tGg/tTg																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	123	243	1	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32164180	32164180	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	96	208	0	ENST00000375023.3:c.5219G>A	p.Trp1740Ter	p.W1740*	ENST00000375023	NM_004557.3	1740	tGg/tAg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157470048	157470048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	39	145	0	ENST00000346085.5:c.2842G>T	p.Ala948Ser	p.A948S	ENST00000346085	NM_020732.3	948	Gca/Tca																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106519984	106519984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	88	203	0	ENST00000359195.3:c.2412G>T	p.Met804Ile	p.M804I	ENST00000359195	NM_002649.2	804	atG/atT																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128843375	128843375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	88	275	0	ENST00000249373.3:c.482G>A	p.Arg161Gln	p.R161Q	ENST00000249373	NM_005631.4	161	cGg/cAg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151841949	151841949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	85	210	2	ENST00000262189.6:c.14192G>A	p.Ser4731Asn	p.S4731N	ENST00000262189	NM_170606.2	4731	aGc/aAc																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135777085	135777085	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	92	215	0	ENST00000298552.3:c.2393C>T	p.Thr798Met	p.T798M	ENST00000298552	NM_001162426.1	798	aCg/aTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431709	49431709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	109	301	0	ENST00000301067.7:c.9430G>A	p.Ala3144Thr	p.A3144T	ENST00000301067	NM_003482.3	3144	Gca/Aca																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105240286	105240286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	90	270	0	ENST00000349310.3:c.665G>A	p.Arg222His	p.R222H	ENST00000349310	NM_001014432.1	222	cGc/cAc																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2107176	2107176	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	72	264	0	ENST00000219476.3:c.845A>G	p.Asp282Gly	p.D282G	ENST00000219476	NM_000548.3	282	gAc/gGc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3828120	3828120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	133	260	0	ENST00000262367.5:c.2005C>T	p.Arg669Trp	p.R669W	ENST00000262367	NM_004380.2	669	Cgg/Tgg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81925150	81925150	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	137	365	0	ENST00000359376.3:c.941T>C	p.Met314Thr	p.M314T	ENST00000359376	NM_002661.3	314	aTg/aCg																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89857933	89857933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	88	265	1	ENST00000389301.3:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000389301	NM_000135.2	413	Cgt/Tgt																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41251827	41251827	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	146	306	0	ENST00000357654.3:c.512T>C	p.Ile171Thr	p.I171T	ENST00000357654	NM_007294.3	171	aTa/aCa																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45423040	45423040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	103	243	0	ENST00000262160.6:c.88G>A	p.Gly30Arg	p.G30R	ENST00000262160	NM_005901.5	30	Gga/Aga																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42799231	42799231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	20	74	0	ENST00000575354.2:c.4715C>T	p.Ala1572Val	p.A1572V	ENST00000575354	NM_015125.3	1572	gCc/gTc																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24175889	24175889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	73	271	0	ENST00000263121.7:c.1117A>G	p.Arg373Gly	p.R373G	ENST00000263121	NM_003073.3	373	Agg/Ggg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44879892	44879892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	142	130	0	ENST00000377967.4:c.481C>T	p.Pro161Ser	p.P161S	ENST00000377967	NM_021140.2	161	Ccc/Tcc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44938474	44938474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	158	182	0	ENST00000377967.4:c.3022G>A	p.Ala1008Thr	p.A1008T	ENST00000377967	NM_021140.2	1008	Gca/Aca																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42797376	42797376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	78	246	0	ENST00000575354.2:c.3743delC	p.Pro1248HisfsTer54	p.P1248Hfs*54	ENST00000575354	NM_015125.3	1246	agC/ag																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37687514	37687514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	61	144	0	ENST00000447079.4:c.4422del	p.Pro1475LeufsTer24	p.P1475Lfs*24	ENST00000447079	NM_015083.1	1473	cGg/cg																																												NEWRECORD																																		
TMEM127	0	MSKCC	GRCh37	2	96919561	96919562	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	89	256	0	ENST00000258439.3:c.701dup	p.Ala235CysfsTer41	p.A235Cfs*41	ENST00000258439	NM_001193304.2	234	cct/ccCt																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114799871	114799871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	154	400	0	ENST00000543371.1:c.539del	p.Pro180ArgfsTer45	p.P180Rfs*45	ENST00000543371	NM_001198531.1	180	Ccg/cg																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128843237	128843237	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	80	275	0	ENST00000249373.3:c.349del	p.Arg117AlafsTer5	p.R117Afs*5	ENST00000249373	NM_005631.4	115	gCc/gc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142186844	142186845	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	84	225	0	ENST00000350721.4:c.6618dup	p.Ser2207IlefsTer15	p.S2207Ifs*15	ENST00000350721	NM_001184.3	2206	-/A																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178085	56178085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	118	420	0	ENST00000399503.3:c.3058C>T	p.Gln1020Ter	p.Q1020*	ENST00000399503	NM_005921.1	1020	Caa/Taa																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68772198	68772199	+	splice_acceptor_variant	Splice_Site	INS	-	-	G			P-0012243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	186	753	0	ENST00000261769.5:c.49dup		p.X17_splice	ENST00000261769	NM_004360.3	17																																													NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202141586	202141586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			423	134	302	0	ENST00000358485.4:c.874C>T	p.Arg292Trp	p.R292W	ENST00000358485	NM_001080125.1	292	Cgg/Tgg																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806633	1806633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56240927		P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			572	207	485	0	ENST00000260795.2:c.1349C>T	p.Thr450Met	p.T450M	ENST00000260795		450	aCg/aTg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467650	66467650	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			345	113	245	0	ENST00000273854.3:c.619A>G	p.Lys207Glu	p.K207E	ENST00000273854	NM_004439.5	207	Aaa/Gaa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			99	39	104	3				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177460	112177460	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			371	126	286	0	ENST00000257430.4:c.6169A>T	p.Lys2057Ter	p.K2057*	ENST00000257430	NM_000038.5	2057	Aag/Tag																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32168766	32168767	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			475	111	457	0	ENST00000375023.3:c.4156_4157delinsAA	p.Gly1386Asn	p.G1386N	ENST00000375023	NM_004557.3	1386	GGt/AAt																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32188368	32188368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			431	126	302	0	ENST00000375023.3:c.973C>T	p.His325Tyr	p.H325Y	ENST00000375023	NM_004557.3	325	Cac/Tac																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509474	106509474	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			365	261	305	0	ENST00000359195.3:c.1468A>C	p.Lys490Gln	p.K490Q	ENST00000359195	NM_002649.2	490	Aag/Cag																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			177	211	271	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			177	211	271	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133759718	133759718	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			199	64	192	0	ENST00000318560.5:c.2041T>C	p.Phe681Leu	p.F681L	ENST00000318560	NM_005157.4	681	Ttc/Ctc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70406261	70406261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			530	143	387	0	ENST00000373644.4:c.3775C>T	p.Pro1259Ser	p.P1259S	ENST00000373644	NM_030625.2	1259	Cca/Tca																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			439	116	295	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94168996	94168996	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			460	136	267	0	ENST00000323929.3:c.1994+2T>A		p.X665_splice	ENST00000323929	NM_005591.3	665																																													NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108124739	108124740	+	missense_variant	Missense_Mutation	DNP	AC	AC	TG			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			304	77	220	0	ENST00000278616.4:c.2097_2098delinsTG	p.Glu699_Gln700delinsAspGlu	p.E699_Q700delinsDE	ENST00000278616	NM_000051.3	699	gaACag/gaTGag																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95557636	95557636	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			460	118	352	0	ENST00000343455.3:c.5431A>G	p.Ile1811Val	p.I1811V	ENST00000343455	NM_177438.2	1811	Att/Gtt																																												NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740665	58740665	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			971	270	929	1	ENST00000305921.3:c.1570C>T	p.Gln524Ter	p.Q524*	ENST00000305921	NM_003620.3	524	Caa/Taa																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47710049	47710050	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			355	88	232	0	ENST00000233146.2:c.2767_2768del	p.Val923LysfsTer2	p.V923Kfs*2	ENST00000233146	NM_000251.2	922	ttTGta/ttta																																												NEWRECORD																																		
CALR	0	MSKCC	GRCh37	19	13051633	13051633	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	CA			P-0002209-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			981	262	891	0	ENST00000316448.5:c.892delinsCA	p.Glu298GlnfsTer12	p.E298Qfs*12	ENST00000316448	NM_004343.3	298	Gag/CAag																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	246	660	1	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29107974	29107974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	133	631	0	ENST00000328354.6:c.715G>A	p.Glu239Lys	p.E239K	ENST00000328354	NM_007194.3	239	Gag/Aag																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15952173	15952182	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTGCGCCC	CTCTGCGCCC	-			P-0006189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	222	525	0	ENST00000268712.3:c.6513_6522del	p.Arg2171SerfsTer15	p.R2171Sfs*15	ENST00000268712	NM_006311.3	2171	agGGGCGCAGAG/ag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27089741	27089741	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	106	262	0	ENST00000324856.7:c.2697del	p.Ala900ProfsTer19	p.A900Pfs*19	ENST00000324856	NM_006015.4	899	gtC/gt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244435	46244438	+	frameshift_variant	Frame_Shift_Del	DEL	AGAT	AGAT	-			P-0006189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	161	575	0	ENST00000334344.6:c.2530_2533del	p.Asp844LeufsTer4	p.D844Lfs*4	ENST00000334344	NM_152641.2	843	caAGAT/ca																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	72	389	2	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	39	397	2	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15288437	15288437	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	32	181	0	ENST00000263388.2:c.4302G>A	p.Trp1434Ter	p.W1434*	ENST00000263388	NM_000435.2	1434	tgG/tgA																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27097733	27097733	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	31	332	0	ENST00000324856.7:c.3322G>T	p.Glu1108Ter	p.E1108*	ENST00000324856	NM_006015.4	1108	Gaa/Taa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099406	27099406	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	28	322	0	ENST00000324856.7:c.3643A>C	p.Met1215Leu	p.M1215L	ENST00000324856	NM_006015.4	1215	Atg/Ctg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106090	27106090	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	23	236	0	ENST00000324856.7:c.5701G>T	p.Gly1901Ter	p.G1901*	ENST00000324856	NM_006015.4	1901	Gga/Tga																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72400804	72400804	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	41	445	0	ENST00000357731.5:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000357731	NM_173808.2	123	Caa/Taa																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25966982	25966982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	51	276	0	ENST00000435504.4:c.2224G>T	p.Glu742Ter	p.E742*	ENST00000435504		742	Gag/Tag																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29455315	29455315	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	54	191	1	ENST00000389048.3:c.2488-1G>A		p.X830_splice	ENST00000389048	NM_004304.4	830																																													NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48025771	48025771	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	42	273	1	ENST00000234420.5:c.649G>T	p.Asp217Tyr	p.D217Y	ENST00000234420	NM_000179.2	217	Gat/Tat																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142253927	142253927	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	28	298	1	ENST00000350721.4:c.3940A>G	p.Asn1314Asp	p.N1314D	ENST00000350721	NM_001184.3	1314	Aat/Gat																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55156682	55156682	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	22	172	0	ENST00000257290.5:c.3083T>C	p.Val1028Ala	p.V1028A	ENST00000257290	NM_006206.4	1028	gTc/gCc																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66356216	66356216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	89	267	0	ENST00000273854.3:c.1281G>T	p.Met427Ile	p.M427I	ENST00000273854	NM_004439.5	427	atG/atT																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143045834	143045834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	55	275	0	ENST00000262992.4:c.1800G>T	p.Gln600His	p.Q600H	ENST00000262992	NM_001101669.1	600	caG/caT																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187629880	187629880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	78	318	0	ENST00000441802.2:c.1102G>C	p.Glu368Gln	p.E368Q	ENST00000441802	NM_005245.3	368	Gaa/Caa																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157256628	157256628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	49	277	0	ENST00000346085.5:c.1955G>C	p.Arg652Thr	p.R652T	ENST00000346085	NM_020732.3	652	aGa/aCa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860765	151860765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	32	240	0	ENST00000262189.6:c.9897G>A	p.Met3299Ile	p.M3299I	ENST00000262189	NM_170606.2	3299	atG/atA																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8331612	8331612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	66	420	0	ENST00000356435.5:c.5504G>C	p.Gly1835Ala	p.G1835A	ENST00000356435		1835	gGc/gCc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	36	151	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	36	151	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	36	151	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94189441	94189441	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	55	328	0	ENST00000323929.3:c.1563+1G>C		p.X521_splice	ENST00000323929	NM_005591.3	521																																													NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100922163	100922163	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs112862471		P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	30	379	0	ENST00000325455.5:c.2349A>G	p.Ile783Met	p.I783M	ENST00000325455	NM_001202474.3	783	atA/atG																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108114757	108114757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	33	280	0	ENST00000278616.4:c.574C>A	p.His192Asn	p.H192N	ENST00000278616	NM_000051.3	192	Cat/Aat																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69218372	69218372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	36	374	0	ENST00000462284.1:c.464C>A	p.Ser155Tyr	p.S155Y	ENST00000462284	NM_002392.5	155	tCt/tAt																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112884201	112884201	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	33	248	0	ENST00000351677.2:c.136A>G	p.Arg46Gly	p.R46G	ENST00000351677	NM_002834.3	46	Aga/Gga																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112915528	112915528	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	43	441	0	ENST00000351677.2:c.927C>G	p.Ile309Met	p.I309M	ENST00000351677	NM_002834.3	309	atC/atG																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133250250	133250250	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	34	354	0	ENST00000320574.5:c.1270C>G	p.Leu424Val	p.L424V	ENST00000320574	NM_006231.2	424	Ctc/Gtc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28964125	28964125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	30	332	0	ENST00000282397.4:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000282397	NM_002019.4	593	Cgg/Tgg																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73355839	73355839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	35	146	0	ENST00000377767.4:c.132G>T	p.Glu44Asp	p.E44D	ENST00000377767	NM_014953.3	44	gaG/gaT																																												NEWRECORD																																		
RAD51	0	MSKCC	GRCh37	15	41021830	41021830	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	33	292	1	ENST00000267868.3:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000267868	NM_002875.4	258	Gag/Cag																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42041920	42041920	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	42	445	0	ENST00000219905.7:c.6115G>T	p.Glu2039Ter	p.E2039*	ENST00000219905	NM_001164273.1	2039	Gaa/Taa																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91304040	91304040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	28	426	1	ENST00000355112.3:c.1437C>A	p.Phe479Leu	p.F479L	ENST00000355112	NM_000057.2	479	ttC/ttA																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99442709	99442709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	34	251	0	ENST00000268035.6:c.1106A>G	p.Asn369Ser	p.N369S	ENST00000268035	NM_000875.3	369	aAc/aGc																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56864492	56864492	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	75	411	0	ENST00000308159.5:c.980G>T	p.Arg327Leu	p.R327L	ENST00000308159	NM_014669.4	327	cGc/cTc																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12013719	12013719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	43	304	1	ENST00000353533.5:c.661G>T	p.Glu221Ter	p.E221*	ENST00000353533	NM_003010.3	221	Gaa/Taa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16021323	16021323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	40	319	0	ENST00000268712.3:c.1934G>A	p.Arg645His	p.R645H	ENST00000268712	NM_006311.3	645	cGt/cAt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29560097	29560097	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	31	329	0	ENST00000358273.4:c.3574G>T	p.Glu1192Ter	p.E1192*	ENST00000358273	NM_001042492.2	1192	Gaa/Taa																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435290	56435290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	22	164	0	ENST00000407977.2:c.1847C>T	p.Pro616Leu	p.P616L	ENST00000407977		616	cCc/cTc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56448277	56448277	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	42	160	0	ENST00000407977.2:c.370A>T	p.Ser124Cys	p.S124C	ENST00000407977		124	Agc/Tgc																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740371	58740371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	28	339	0	ENST00000305921.3:c.1276C>A	p.Pro426Thr	p.P426T	ENST00000305921	NM_003620.3	426	Cca/Aca																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59926556	59926556	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	33	378	0	ENST00000259008.2:c.441C>G	p.Tyr147Ter	p.Y147*	ENST00000259008	NM_032043.2	147	taC/taG																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2213543	2213543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	72	263	0	ENST00000398665.3:c.1563G>C	p.Lys521Asn	p.K521N	ENST00000398665	NM_032482.2	521	aaG/aaC																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15350787	15350787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	26	196	0	ENST00000263377.2:c.3216G>C	p.Gln1072His	p.Q1072H	ENST00000263377	NM_058243.2	1072	caG/caC																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17952282	17952282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	57	269	1	ENST00000458235.1:c.1058C>A	p.Thr353Lys	p.T353K	ENST00000458235	NM_000215.3	353	aCg/aAg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42797948	42797948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	66	208	1	ENST00000575354.2:c.4000C>T	p.Arg1334Trp	p.R1334W	ENST00000575354	NM_015125.3	1334	Cgg/Tgg																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164611	36164611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	45	174	0	ENST00000300305.3:c.1264G>A	p.Glu422Lys	p.E422K	ENST00000300305		422	Gag/Aag																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53223892	53223892	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	27	184	0	ENST00000375401.3:c.3467A>C	p.Lys1156Thr	p.K1156T	ENST00000375401	NM_004187.3	1156	aAg/aCg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46287215	46287216	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	16	216	0	ENST00000334344.6:c.5165dup	p.Thr1723HisfsTer6	p.T1723Hfs*6	ENST00000334344	NM_152641.2	1720	-/G																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099023	27099023	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	58	293	0	ENST00000324856.7:c.3442del	p.Gln1148SerfsTer13	p.Q1148Sfs*13	ENST00000324856	NM_006015.4	1147	Ccc/cc																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31022924	31022925	+	missense_variant	Missense_Mutation	DNP	AG	AG	TA			P-0003229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	43	305	0	ENST00000375687.4:c.2409_2410delinsTA	p.Gln803_Gly804delinsHisArg	p.Q803_G804delinsHR	ENST00000375687	NM_015338.5	803	caAGga/caTAga																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178951996	178951996	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			817	80	370	0	ENST00000263967.3:c.3051T>G	p.Asp1017Glu	p.D1017E	ENST00000263967	NM_006218.2	1017	gaT/gaG																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952000	178952000	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			819	81	369	0	ENST00000263967.3:c.3055A>G	p.Ile1019Val	p.I1019V	ENST00000263967	NM_006218.2	1019	Att/Gtt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	88	371	0	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29559886	29559887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	106	184	0	ENST00000358273.4:c.3484dupA	p.Met1162AsnfsTer33	p.M1162Nfs*33	ENST00000358273	NM_001042492.2	1161	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	396	716	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	268	547	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180039583	180039583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75614493		P-0010812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	376	864	1	ENST00000261937.6:c.3460G>A	p.Gly1154Arg	p.G1154R	ENST00000261937	NM_182925.4	1154	Gga/Aga																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15300155	15300155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	360	792	1	ENST00000263388.2:c.1121G>A	p.Arg374Gln	p.R374Q	ENST00000263388	NM_000435.2	374	cGg/cAg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46287446	46287446	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	204	538	0	ENST00000334344.6:c.5305C>T	p.Arg1769Ter	p.R1769*	ENST00000334344	NM_152641.2	1769	Cga/Tga																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251859	212251859	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147514533		P-0010812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	188	427	0	ENST00000342788.4:c.3200G>A	p.Arg1067Gln	p.R1067Q	ENST00000342788	NM_005235.2	1067	cGa/cAa																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	471	503	0	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	72	299	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162750016	162750016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	27	315	0	ENST00000367921.3:c.2548C>A	p.Leu850Ile	p.L850I	ENST00000367921	NM_006182.2	850	Ctt/Att																																												NEWRECORD																																		
STAT5B	0	MSKCC	GRCh37	17	40369290	40369290	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	35	655	0	ENST00000293328.3:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000293328	NM_012448.3	423	cGa/cAa																																												NEWRECORD																																		
STAT5A	0	MSKCC	GRCh37	17	40456579	40456579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	54	593	0	ENST00000345506.4:c.1289G>A	p.Arg430Gln	p.R430Q	ENST00000345506	NM_003152.3	430	cGg/cAg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575170	48575170	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	24	310	0	ENST00000342988.3:c.364A>T	p.Lys122Ter	p.K122*	ENST00000342988	NM_005359.5	122	Aaa/Taa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099340	27099340	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AA			P-0004268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	25	366	0	ENST00000324856.7:c.3577delinsAA	p.Asp1193LysfsTer4	p.D1193Kfs*4	ENST00000324856	NM_006015.4	1193	Gat/AAat																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	181	366	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	89	310	0	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56482437	56482437	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	57	280	0	ENST00000267101.3:c.985A>G	p.Lys329Glu	p.K329E	ENST00000267101	NM_001982.3	329	Aaa/Gaa																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842405	68842406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	112	460	0	ENST00000261769.5:c.469dup	p.Val157GlyfsTer11	p.V157Gfs*11	ENST00000261769	NM_004360.3	156	tgg/tGgg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29662032	29662033	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	C			P-0009731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	93	210	0	ENST00000358273.4:c.5989_5990delinsC	p.Trp1997ArgfsTer15	p.W1997Rfs*15	ENST00000358273	NM_001042492.2	1997	TGg/Cg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	127	346	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	205	522	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13971292	13971292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	153	512	1	ENST00000405192.2:c.637C>T	p.Arg213Cys	p.R213C	ENST00000405192	NM_001163147.1	213	Cgc/Tgc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	107	345	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174357	112174358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	104	314	0	ENST00000257430.4:c.3067dup	p.Thr1023AsnfsTer6	p.T1023Nfs*6	ENST00000257430	NM_000038.5	1022	-/A																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118343255	118343255	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	277	406	0	ENST00000534358.1:c.1381A>C	p.Lys461Gln	p.K461Q	ENST00000534358	NM_005933.3	461	Aaa/Caa																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2223235	2223235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	189	520	0	ENST00000326181.6:c.847C>T	p.Arg283Cys	p.R283C	ENST00000326181	NM_032271.2	283	Cgc/Tgc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593413	48593415	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	142	393	0	ENST00000342988.3:c.1165_1167del	p.Leu389del	p.L389del	ENST00000342988	NM_005359.5	388	caGTTg/cag																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52620566	52620566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	141	459	0	ENST00000394830.3:c.3187C>T	p.Arg1063Trp	p.R1063W	ENST00000394830	NM_018313.4	1063	Cgg/Tgg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539933	187539933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	158	466	0	ENST00000441802.2:c.7807G>A	p.Val2603Met	p.V2603M	ENST00000441802	NM_005245.3	2603	Gtg/Atg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139399902	139399902	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	190	571	0	ENST00000277541.6:c.4446C>A	p.Asn1482Lys	p.N1482K	ENST00000277541	NM_017617.3	1482	aaC/aaA																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	171	181	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	283	435	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48919244	48919244	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	293	417	0	ENST00000267163.4:c.409G>T	p.Glu137Ter	p.E137*	ENST00000267163	NM_000321.2	137	Gaa/Taa																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46512257	46512257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	67	763	1	ENST00000262741.5:c.982G>A	p.Val328Ile	p.V328I	ENST00000262741	NM_003629.3	328	Gtc/Atc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48584567	48584567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	136	537	0	ENST00000342988.3:c.740G>A	p.Gly247Glu	p.G247E	ENST00000342988	NM_005359.5	247	gGa/gAa																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589629	67589630	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGATTA			P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	176	263	0	ENST00000274335.5:c.1393_1398dup	p.Arg465_Leu466dup	p.R465_L466dup	ENST00000274335		465	-/AGATTA																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67590411	67590411	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	159	423	0	ENST00000274335.5:c.1477del	p.Ile493TyrfsTer17	p.I493Yfs*17	ENST00000274335		491	atA/at																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89831438	89831438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	138	675	1	ENST00000389301.3:c.2638C>T	p.Arg880Ter	p.R880*	ENST00000389301	NM_000135.2	880	Cga/Tga																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188196	10188196	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0005507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	83	415	0	ENST00000256474.2:c.341-2A>C		p.X114_splice	ENST00000256474	NM_000551.3	114																																													NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29107927	29107927	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	137	682	1	ENST00000328354.6:c.762del	p.Lys255SerfsTer20	p.K255Sfs*20	ENST00000328354	NM_007194.3	254	agG/ag																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643923	52643924	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	108	321	0	ENST00000394830.3:c.1972dup	p.Met658AsnfsTer7	p.M658Nfs*7	ENST00000394830	NM_018313.4	658	atg/aAtg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165212	47165213	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005088-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			872	116	519	1	ENST00000409792.3:c.913dup	p.Thr305AsnfsTer4	p.T305Nfs*4	ENST00000409792	NM_014159.6	305	aca/aAca																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52443880	52443880	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005088-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			640	64	547	0	ENST00000460680.1:c.15G>A	p.Trp5Ter	p.W5*	ENST00000460680	NM_004656.3	5	tgG/tgA																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44928870	44928870	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005088-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	67	506	0	ENST00000377967.4:c.1971del	p.Glu657AspfsTer34	p.E657Dfs*34	ENST00000377967	NM_021140.2	657	gAa/ga																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001679-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	110	413	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001679-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	1026	539	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131940572	131940572	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001679-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	212	571	0	ENST00000265335.6:c.2599A>T	p.Thr867Ser	p.T867S	ENST00000265335		867	Aca/Tca																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41554452	41554452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001679-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	216	593	0	ENST00000263253.7:c.3538A>G	p.Lys1180Glu	p.K1180E	ENST00000263253	NM_001429.3	1180	Aaa/Gaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578397	7578398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001679-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	129	369	0	ENST00000269305.4:c.532dupC	p.His178ProfsTer3	p.H178Pfs*3	ENST00000269305	NM_001126112.2	178	cac/cCac																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55561818	55561818	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001393-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	31	452	2	ENST00000288135.5:c.208A>T	p.Ile70Phe	p.I70F	ENST00000288135	NM_000222.2	70	Atc/Ttc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527471	157527471	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001393-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			798	64	493	0	ENST00000346085.5:c.5196G>C	p.Glu1732Asp	p.E1732D	ENST00000346085	NM_020732.3	1732	gaG/gaC																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139396800	139396800	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001393-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	82	503	0	ENST00000277541.6:c.5308C>A	p.Pro1770Thr	p.P1770T	ENST00000277541	NM_017617.3	1770	Cct/Act																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118342381	118342381	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001393-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	86	735	0	ENST00000534358.1:c.507A>T	p.Lys169Asn	p.K169N	ENST00000534358	NM_005933.3	169	aaA/aaT																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5240345	5240345	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0001393-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	31	437	0	ENST00000357368.4:c.1571-2A>T		p.X524_splice	ENST00000357368	NM_002850.3	524																																													NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178928079	178928084	+	inframe_deletion	In_Frame_Del	DEL	GAAGAT	GAAGAT	-			P-0001393-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	129	562	0	ENST00000263967.3:c.1357_1362delGAAGAT	p.Glu453_Asp454del	p.E453_D454del	ENST00000263967	NM_006218.2	453	GAAGAT/-																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577520	7577521	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGG			P-0001393-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	235	431	0	ENST00000269305.4:c.758_760dupCCA	p.Thr253dup	p.T253dup	ENST00000269305	NM_001126112.2	253	atc/aCCAtc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	39	312	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	38	674	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174309	112174310	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	41	438	0	ENST00000257430.4:c.3022dup	p.Ile1008AsnfsTer3	p.I1008Nfs*3	ENST00000257430	NM_000038.5	1006	-/A																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0005984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	464	731	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	143	465	0	ENST00000342988.3:c.1611C>G	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaG																																												NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187446235	187446235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	158	585	1	ENST00000232014.4:c.1453C>T	p.His485Tyr	p.H485Y	ENST00000232014	NM_001130845.1	485	Cat/Tat																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103514015	103514015	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	221	555	0	ENST00000355739.4:c.831G>C	p.Glu277Asp	p.E277D	ENST00000355739	NM_000123.3	277	gaG/gaC																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65543210	65543210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	327	499	0	ENST00000358664.4:c.467G>A	p.Arg156Gln	p.R156Q	ENST00000358664	NM_002382.4	156	cGg/cAg																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17124920	17124920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	283	454	0	ENST00000285071.4:c.802C>T	p.Arg268Trp	p.R268W	ENST00000285071	NM_144997.5	268	Cgg/Tgg																																												NEWRECORD																																		
MAP2K2	0	MSKCC	GRCh37	19	4090636	4090636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	551	651	0	ENST00000262948.5:c.1163G>A	p.Arg388Gln	p.R388Q	ENST00000262948	NM_030662.3	388	cGg/cAg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7143079	7143079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138897740		P-0005984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	250	328	0	ENST00000302850.5:c.2290C>T	p.Leu764Phe	p.L764F	ENST00000302850	NM_000208.2	764	Ctt/Ttt																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40739018	40739018	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	361	581	0	ENST00000373198.4:c.3266A>C	p.Lys1089Thr	p.K1089T	ENST00000373198	NM_133170.3	1089	aAg/aCg																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102207802	102207803	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	354	817	0	ENST00000263464.3:c.1785dup	p.Lys596GlnfsTer18	p.K596Qfs*18	ENST00000263464	NM_001165.4	595	atc/atCc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0014389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	258	295	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0014389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			768	595	419	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2226369	2226369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	218	708	0	ENST00000326181.6:c.1982T>C	p.Val661Ala	p.V661A	ENST00000326181	NM_032271.2	661	gTg/gCg																																												NEWRECORD																																		
RAD51C	0	MSKCC	GRCh37	17	56772432	56772432	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	153	567	0	ENST00000337432.4:c.286A>T	p.Thr96Ser	p.T96S	ENST00000337432	NM_058216.2	96	Acc/Tcc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55141035	55141035	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	25	236	0	ENST00000257290.5:c.1681G>C	p.Val561Leu	p.V561L	ENST00000257290	NM_006206.4	561	Gtc/Ctc																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98242724	98242724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014389-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	241	479	2	ENST00000331920.6:c.893A>G	p.Asn298Ser	p.N298S	ENST00000331920	NM_000264.3	298	aAt/aGt																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	102	279	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
RAC1	0	MSKCC	GRCh37	7	6426893	6426893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	58	464	0	ENST00000356142.4:c.86C>T	p.Pro29Leu	p.P29L	ENST00000356142	NM_018890.3	29	cCt/cTt																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35875645	35875645	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201449880		P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	59	419	0	ENST00000303115.3:c.832G>A	p.Asp278Asn	p.D278N	ENST00000303115	NM_002185.3	278	Gat/Aat																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12633229	12633229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	379	501	0	ENST00000251849.4:c.1171A>T	p.Arg391Trp	p.R391W	ENST00000251849	NM_002880.3	391	Agg/Tgg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89390170	89390170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148593404		P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	147	582	0	ENST00000336596.2:c.919G>A	p.Glu307Lys	p.E307K	ENST00000336596	NM_005233.5	307	Gag/Aag																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372023	55372023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	142	351	0	ENST00000297316.4:c.713C>T	p.Ala238Val	p.A238V	ENST00000297316	NM_022454.3	238	gCc/gTc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15272140	15272140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	81	187	0	ENST00000263388.2:c.6299C>T	p.Ser2100Leu	p.S2100L	ENST00000263388	NM_000435.2	2100	tCg/tTg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9916259	9916259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	112	438	0	ENST00000330684.3:c.2030C>T	p.Ser677Phe	p.S677F	ENST00000330684	NM_001134407.1	677	tCc/tTc																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81554350	81554350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	77	660	0	ENST00000298171.2:c.370G>A	p.Glu124Lys	p.E124K	ENST00000298171	NM_000369.2	124	Gag/Aag																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93967209	93967209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	58	578	0	ENST00000369303.4:c.2143G>A	p.Glu715Lys	p.E715K	ENST00000369303	NM_004440.3	715	Gaa/Aaa																																												NEWRECORD																																		
CCND3	0	MSKCC	GRCh37	6	41903745	41903746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	368	631	2	ENST00000372991.4:c.811dupC	p.Arg271ProfsTer53	p.R271Pfs*53	ENST00000372991	NM_001760.3	271	cgg/cCgg																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45003764	45003764	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	205	463	0	ENST00000558401.1:c.20T>G	p.Leu7Ter	p.L7*	ENST00000558401	NM_004048.2	7	tTa/tGa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16263953	16263953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	191	567	1	ENST00000375759.3:c.10322C>T	p.Pro3441Leu	p.P3441L	ENST00000375759	NM_015001.2	3441	cCt/cTt																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16086067	16086067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	168	444	1	ENST00000281043.3:c.1243G>A	p.Glu415Lys	p.E415K	ENST00000281043	NM_005378.4	415	Gag/Aag																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25967324	25967324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	270	483	0	ENST00000435504.4:c.1882C>T	p.Pro628Ser	p.P628S	ENST00000435504		628	Ccc/Tcc																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178096135	178096135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	110	398	0	ENST00000397062.3:c.1196C>T	p.Ser399Phe	p.S399F	ENST00000397062	NM_006164.4	399	tCt/tTt																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134670234	134670234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	104	453	0	ENST00000398015.3:c.145G>A	p.Asp49Asn	p.D49N	ENST00000398015	NM_004441.4	49	Gat/Aat																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	240488	240488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	23	168	0	ENST00000264932.6:c.1448C>T	p.Pro483Leu	p.P483L	ENST00000264932	NM_004168.2	483	cCa/cTa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112178355	112178355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	47	385	0	ENST00000257430.4:c.7064C>T	p.Ser2355Leu	p.S2355L	ENST00000257430	NM_000038.5	2355	tCa/tTa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8486299	8486299	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142009246		P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	73	289	1	ENST00000356435.5:c.2518C>T	p.Leu840Phe	p.L840F	ENST00000356435		840	Ctt/Ttt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8497256	8497256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	23	371	0	ENST00000356435.5:c.2335G>A	p.Asp779Asn	p.D779N	ENST00000356435		779	Gat/Aat																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249341	110249341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1358	272	835	2	ENST00000374672.4:c.1232C>T	p.Ser411Phe	p.S411F	ENST00000374672	NM_004235.4	411	tCc/tTc																																												NEWRECORD																																		
FGF4	0	MSKCC	GRCh37	11	69589582	69589582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	182	411	0	ENST00000168712.1:c.271G>A	p.Gly91Ser	p.G91S	ENST00000168712	NM_002007.2	91	Ggc/Agc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118379915	118379915	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	104	378	0	ENST00000534358.1:c.10900G>A	p.Glu3634Lys	p.E3634K	ENST00000534358	NM_005933.3	3634	Gaa/Aaa																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81422086	81422086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	101	417	1	ENST00000298171.2:c.62G>A	p.Gly21Glu	p.G21E	ENST00000298171	NM_000369.2	21	gGa/gAa																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88483969	88483969	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	173	480	1	ENST00000360948.2:c.1601A>G	p.Lys534Arg	p.K534R	ENST00000360948	NM_001012338.2	534	aAg/aGg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3778288	3778288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	52	277	0	ENST00000262367.5:c.6760C>T	p.Leu2254Phe	p.L2254F	ENST00000262367	NM_004380.2	2254	Ctc/Ttc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9892238	9892238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	212	549	0	ENST00000330684.3:c.2252G>A	p.Gly751Glu	p.G751E	ENST00000330684	NM_001134407.1	751	gGg/gAg																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41258500	41258500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	56	463	1	ENST00000357654.3:c.185C>T	p.Pro62Leu	p.P62L	ENST00000357654	NM_007294.3	62	cCt/cTt																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2227100	2227100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	75	176	1	ENST00000398665.3:c.4580C>T	p.Ser1527Phe	p.S1527F	ENST00000398665	NM_032482.2	1527	tCc/tTc																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41758806	41758806	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	239	721	0	ENST00000301178.4:c.1860A>T	p.Leu620Phe	p.L620F	ENST00000301178	NM_021913.4	620	ttA/ttT																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70350059	70350059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	149	194	1	ENST00000374080.3:c.4042C>T	p.Leu1348Phe	p.L1348F	ENST00000374080		1348	Ctc/Ttc																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12870899	12870900	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	89	318	0	ENST00000228872.4:c.126_127delinsTT	p.Arg43Trp	p.R43W	ENST00000228872	NM_004064.3	42	acCCgg/acTTgg																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31374360	31374361	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	162	651	0	ENST00000328111.2:c.359_360delinsTT	p.Ser120Phe	p.S120F	ENST00000328111	NM_006892.3	120	tCC/tTT																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55209987	55209988	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	118	427	0	ENST00000275493.2:c.97_98delinsAA	p.Gly33Asn	p.G33N	ENST00000275493	NM_005228.3	33	GGc/AAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002740-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	103	559	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11204749	11204749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199612643		P-0002740-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	53	690	0	ENST00000361445.4:c.4828G>A	p.Glu1610Lys	p.E1610K	ENST00000361445	NM_004958.3	1610	Gag/Aag																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115109949	115109950	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0002740-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	39	405	0	ENST00000257566.3:c.1927_1928dup	p.Ser644ThrfsTer246	p.S644Tfs*246	ENST00000257566	NM_016569.3	643	tac/taTAc																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90627545	90627545	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002740-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	109	646	0	ENST00000330062.3:c.1312delC	p.Leu438SerfsTer30	p.L438Sfs*30	ENST00000330062	NM_002168.2	438	Ctc/tc																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	56	254	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112025277	112025277	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	186	530	0	ENST00000368678.4:c.472G>C	p.Asp158His	p.D158H	ENST00000368678		158	Gat/Cat																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55238895	55238895	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	88	298	0	ENST00000275493.2:c.1908T>G	p.Cys636Trp	p.C636W	ENST00000275493	NM_005228.3	636	tgT/tgG																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18443838	18443838	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	246	344	0	ENST00000266497.5:c.811A>T	p.Ile271Phe	p.I271F	ENST00000266497		271	Atc/Ttc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28959063	28959063	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	108	300	0	ENST00000282397.4:c.2075T>G	p.Ile692Ser	p.I692S	ENST00000282397	NM_002019.4	692	aTc/aGc																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	100	237	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15968871	15968871	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	103	312	0	ENST00000268712.3:c.4879T>G	p.Leu1627Val	p.L1627V	ENST00000268712	NM_006311.3	1627	Ttg/Gtg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	123	293	0	ENST00000278616.4:c.8432dupA	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	132	343	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	96	210	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11130342	11130342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	112	581	1	ENST00000344626.4:c.2581G>A	p.Glu861Lys	p.E861K	ENST00000344626	NM_003072.3	861	Gag/Aag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057749	27057749	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	207	745	0	ENST00000324856.7:c.1457C>G	p.Ser486Cys	p.S486C	ENST00000324856	NM_006015.4	486	tCc/tGc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057899	27057899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	164	529	0	ENST00000324856.7:c.1607C>T	p.Ser536Phe	p.S536F	ENST00000324856	NM_006015.4	536	tCc/tTc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27058072	27058072	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	36	141	0	ENST00000324856.7:c.1780C>T	p.Gln594Ter	p.Q594*	ENST00000324856	NM_006015.4	594	Cag/Tag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112179353	112179353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	139	438	0	ENST00000257430.4:c.8062G>A	p.Glu2688Lys	p.E2688K	ENST00000257430	NM_000038.5	2688	Gaa/Aaa																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157488317	157488317	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	59	226	0	ENST00000346085.5:c.3023C>T	p.Ala1008Val	p.A1008V	ENST00000346085	NM_020732.3	1008	gCa/gTa																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88635831	88635831	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	171	378	0	ENST00000372037.3:c.56C>G	p.Ser19Cys	p.S19C	ENST00000372037	NM_004329.2	19	tCt/tGt																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44820528	44820528	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	153	188	0	ENST00000377967.4:c.226-1G>A		p.X76_splice	ENST00000377967	NM_021140.2	76																																													NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27087378	27087379	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	182	567	0	ENST00000324856.7:c.1956dup	p.Thr653AspfsTer23	p.T653Dfs*23	ENST00000324856	NM_006015.4	651	atg/atGg																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30320936	30320937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGCC			P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	160	552	0	ENST00000322652.5:c.1347_1351dup	p.Pro451LeufsTer7	p.P451Lfs*7	ENST00000322652	NM_015355.2	449	cat/caTTGCCt																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76776357	76776358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	199	328	0	ENST00000373344.5:c.7108dup	p.Gln2370ProfsTer7	p.Q2370Pfs*7	ENST00000373344	NM_000489.3	2370	cag/cCag																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831263	72831263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	128	878	2	ENST00000268489.5:c.5318del	p.Asn1773ThrfsTer10	p.N1773Tfs*10	ENST00000268489	NM_006885.3	1773	aAc/ac																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	239	227	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	176	282	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49428410	49428411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1284500089		P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	81	368	0	ENST00000301067.7:c.10394dup	p.Pro3466ThrfsTer2	p.P3466Tfs*2	ENST00000301067	NM_003482.3	3465	gga/ggGa																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30729968	30729968	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	172	209	0	ENST00000359013.4:c.1564C>T	p.Arg522Ter	p.R522*	ENST00000359013	NM_001024847.2	522	Cga/Tga																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89468488	89468488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	115	329	0	ENST00000336596.2:c.2022G>T	p.Met674Ile	p.M674I	ENST00000336596	NM_005233.5	674	atG/atT																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55136837	55136837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	151	403	0	ENST00000257290.5:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000257290	NM_006206.4	387	Gaa/Aaa																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55962432	55962432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	192	371	0	ENST00000263923.4:c.2692G>A	p.Val898Met	p.V898M	ENST00000263923	NM_002253.2	898	Gtg/Atg																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106164916	106164916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	124	168	0	ENST00000380013.4:c.3784C>T	p.Arg1262Trp	p.R1262W	ENST00000380013	NM_001127208.2	1262	Cgg/Tgg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38955731	38955731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	97	376	0	ENST00000357387.3:c.2575G>C	p.Asp859His	p.D859H	ENST00000357387	NM_152756.3	859	Gat/Cat																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8521392	8521392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	185	401	0	ENST00000356435.5:c.846G>T	p.Met282Ile	p.M282I	ENST00000356435		282	atG/atT																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102869477	102869477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	72	212	0	ENST00000307046.8:c.164G>C	p.Gly55Ala	p.G55A	ENST00000307046	NM_001111285.1	55	gGg/gCg																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111884578	111884578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	215	418	0	ENST00000341259.2:c.754G>A	p.Ala252Thr	p.A252T	ENST00000341259	NM_005475.2	252	Gca/Aca																																												NEWRECORD																																		
RAD51B	0	MSKCC	GRCh37	14	68290288	68290288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	52	407	0	ENST00000487270.1:c.28G>T	p.Gly10Cys	p.G10C	ENST00000487270	NM_133509.3	10	Ggt/Tgt																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37682473	37682473	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	269	267	0	ENST00000447079.4:c.3664G>T	p.Glu1222Ter	p.E1222*	ENST00000447079	NM_015083.1	1222	Gag/Tag																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78899176	78899176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	22	193	0	ENST00000306801.3:c.2815G>T	p.Asp939Tyr	p.D939Y	ENST00000306801	NM_020761.2	939	Gac/Tac																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410892	63410892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	252	518	0	ENST00000330258.3:c.2275G>A	p.Val759Ile	p.V759I	ENST00000330258	NM_152424.3	759	Gtt/Att																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49448529	49448529	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	150	233	0	ENST00000301067.7:c.182del	p.Gly61ValfsTer69	p.G61Vfs*69	ENST00000301067	NM_003482.3	61	gGt/gt																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99472873	99472873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	226	720	1	ENST00000268035.6:c.2869G>T	p.Val957Phe	p.V957F	ENST00000268035	NM_000875.3	957	Gtc/Ttc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89352562	89352562	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	196	715	0	ENST00000301030.4:c.777C>G	p.Asn259Lys	p.N259K	ENST00000301030	NM_001256183.1	259	aaC/aaG																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52441433	52441447	+	inframe_deletion	In_Frame_Del	DEL	GCCTTGGCCAACTCC	GCCTTGGCCAACTCC	-			P-0005835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	209	639	0	ENST00000460680.1:c.405_419del	p.Glu136_Ala140del	p.E136_A140del	ENST00000460680	NM_004656.3	135	ccGGAGTTGGCCAAGGCc/ccc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63851298	63851299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	145	399	0	ENST00000279873.7:c.2081dup	p.Leu695AlafsTer31	p.L695Afs*31	ENST00000279873	NM_032199.2	692	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576854	7576868	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TGAAGGGTGAAATAT	TGAAGGGTGAAATAT	A			P-0005835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	189	670	0	ENST00000269305.4:c.978_992delinsT	p.Glu326AspfsTer6	p.E326Dfs*6	ENST00000269305	NM_001126112.2	326	gaATATTTCACCCTTCAg/gaTg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47163194	47163194	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	106	555	0	ENST00000409792.3:c.2932G>T	p.Glu978Ter	p.E978*	ENST00000409792	NM_014159.6	978	Gaa/Taa																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52677289	52677289	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	152	847	1	ENST00000394830.3:c.970A>T	p.Arg324Ter	p.R324*	ENST00000394830	NM_018313.4	324	Aga/Tga																																												NEWRECORD																																		
PHOX2B	0	MSKCC	GRCh37	4	41750462	41750462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	51	683	1	ENST00000226382.2:c.166G>A	p.Gly56Ser	p.G56S	ENST00000226382	NM_003924.3	56	Ggc/Agc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624297	89624297	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	42	373	0	ENST00000371953.3:c.71A>T	p.Asp24Val	p.D24V	ENST00000371953	NM_000314.4	24	gAc/gTc																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37882064	37882064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	43	558	1	ENST00000269571.5:c.2830C>T	p.Pro944Ser	p.P944S	ENST00000269571		944	Ccc/Tcc																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90955527	90955528	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	151	664	0	ENST00000265433.3:c.2137dup	p.Ala713GlyfsTer29	p.A713Gfs*29	ENST00000265433	NM_002485.4	713	gct/gGct																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183694	10183707	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCCGGGCGGCC	GAGGCCGGGCGGCC	-			P-0012256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	87	551	0	ENST00000256474.2:c.164_177del	p.Glu55AlafsTer72	p.E55Afs*72	ENST00000256474	NM_000551.3	55	GAGGCCGGGCGGCCg/g																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	77	449	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25469179	25469179	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	151	574	0	ENST00000264709.3:c.1280-1G>A		p.X427_splice	ENST00000264709	NM_175629.2	427																																													NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55984951	55984951	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	119	672	0	ENST00000263923.4:c.178G>C	p.Asp60His	p.D60H	ENST00000263923	NM_002253.2	60	Gac/Cac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187628667	187628667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	122	604	0	ENST00000441802.2:c.2315G>T	p.Gly772Val	p.G772V	ENST00000441802	NM_005245.3	772	gGa/gTa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176893	112176893	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	162	672	0	ENST00000257430.4:c.5602G>C	p.Asp1868His	p.D1868H	ENST00000257430	NM_000038.5	1868	Gat/Cat																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91293050	91293050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	131	545	0	ENST00000355112.3:c.552G>C	p.Gln184His	p.Q184H	ENST00000355112	NM_000057.2	184	caG/caC																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14041626	14041626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	122	759	1	ENST00000311895.7:c.2173G>A	p.Glu725Lys	p.E725K	ENST00000311895	NM_005236.2	725	Gag/Aag																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68849586	68849586	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	165	766	0	ENST00000261769.5:c.1489G>T	p.Glu497Ter	p.E497*	ENST00000261769	NM_004360.3	497	Gag/Tag																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	143	616	0	ENST00000342988.3:c.1523G>A	p.Gly508Asp	p.G508D	ENST00000342988	NM_005359.5	508	gGc/gAc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604799	48604799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	35	532	0	ENST00000342988.3:c.1621C>T	p.His541Tyr	p.H541Y	ENST00000342988	NM_005359.5	541	Cat/Tat																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10267111	10267111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	125	613	0	ENST00000340748.4:c.1307C>T	p.Ser436Phe	p.S436F	ENST00000340748		436	tCt/tTt																																												NEWRECORD																																		
SH2D1A	0	MSKCC	GRCh37	X	123505218	123505218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	125	561	0	ENST00000371139.4:c.364G>A	p.Asp122Asn	p.D122N	ENST00000371139	NM_001114937.2	122	Gat/Aat																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16255092	16255093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	113	493	0	ENST00000375759.3:c.2363dup	p.Asn788LysfsTer2	p.N788Kfs*2	ENST00000375759	NM_015001.2	786	aca/acAa																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575152	48575152	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005991-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	357	402	0	ENST00000342988.3:c.346C>T	p.Gln116Ter	p.Q116*	ENST00000342988	NM_005359.5	116	Cag/Tag																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55955033	55955033	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0005991-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	213	384	0	ENST00000263923.4:c.3510+2T>C		p.X1170_splice	ENST00000263923	NM_002253.2	1170																																													NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108216518	108216518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005991-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1214	344	538	0	ENST00000278616.4:c.8467G>A	p.Val2823Ile	p.V2823I	ENST00000278616	NM_000051.3	2823	Gtt/Att																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578267	7578268	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0005991-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	314	493	0	ENST00000269305.4:c.580_581dupCT	p.Ile195LeufsTer53	p.I195Lfs*53	ENST00000269305	NM_001126112.2	194	ctt/ctCTt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	11	401	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29528082	29528082	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	24	266	0	ENST00000358273.4:c.1090T>G	p.Phe364Val	p.F364V	ENST00000358273	NM_001042492.2	364	Ttc/Gtc																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	224	625	1	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	114	660	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	52	230	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																												NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	115	675	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56448298	56448298	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	102	613	0	ENST00000407977.2:c.349delC	p.Arg117AlafsTer41	p.R117Afs*41	ENST00000407977		117	Cgc/gc																																												NEWRECORD																																		
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	168	1084	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga																																												NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	87	473	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72822585	72822586	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	117	913	2	ENST00000268489.5:c.9589dupC	p.Gln3197ProfsTer42	p.Q3197Pfs*42	ENST00000268489	NM_006885.3	3197	cag/cCag																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67588981	67588981	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	104	568	0	ENST00000274335.5:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000274335		358	Cga/Tga																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106157834	106157834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	77	591	0	ENST00000380013.4:c.2735C>T	p.Ala912Val	p.A912V	ENST00000380013	NM_001127208.2	912	gCg/gTg																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	153	701	2	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140434413	140434413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	132	736	0	ENST00000288602.6:c.2285C>T	p.Ala762Val	p.A762V	ENST00000288602	NM_004333.4	762	gCg/gTg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38968098	38968098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	107	758	0	ENST00000357387.3:c.1007G>A	p.Arg336His	p.R336H	ENST00000357387	NM_152756.3	336	cGt/cAt																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741837	17741837	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199584989		P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	47	197	1	ENST00000250003.3:c.508G>A	p.Ala170Thr	p.A170T	ENST00000250003	NM_002478.4	170	Gcg/Acg																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134884908	134884908	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202034365		P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	130	799	2	ENST00000398015.3:c.1684G>A	p.Val562Ile	p.V562I	ENST00000398015	NM_004441.4	562	Gtc/Atc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258889	16258889	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	174	828	1	ENST00000375759.3:c.6158delA	p.Asn2053ThrfsTer11	p.N2053Tfs*11	ENST00000375759	NM_015001.2	2052	Aaa/aa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76919038	76919038	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	97	575	1	ENST00000373344.5:c.3953delA	p.Asn1318IlefsTer28	p.N1318Ifs*28	ENST00000373344	NM_000489.3	1318	aAt/at																																												NEWRECORD																																		
CDK4	0	MSKCC	GRCh37	12	58144708	58144708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	215	574	1	ENST00000257904.6:c.520G>A	p.Val174Met	p.V174M	ENST00000257904	NM_000075.3	174	Gtg/Atg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47163377	47163377	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	110	666	0	ENST00000409792.3:c.2749del	p.Ser917ValfsTer5	p.S917Vfs*5	ENST00000409792	NM_014159.6	917	Agt/gt																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	103	435	0	ENST00000374542.5:c.767G>A	p.Arg256His	p.R256H	ENST00000374542	NM_001141970.1	256	cGc/cAc																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9782390	9782390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	162	724	0	ENST00000377346.4:c.2323G>T	p.Gly775Cys	p.G775C	ENST00000377346	NM_005026.3	775	Ggc/Tgc																																												NEWRECORD																																		
MUTYH	0	MSKCC	GRCh37	1	45797118	45797118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	109	732	0	ENST00000372115.3:c.1255G>A	p.Ala419Thr	p.A419T	ENST00000372115	NM_001048171.1	419	Gcc/Acc																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155874184	155874184	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	97	896	0	ENST00000368323.3:c.347A>G	p.Gln116Arg	p.Q116R	ENST00000368323	NM_006912.5	116	cAg/cGg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156849041	156849041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	124	634	0	ENST00000524377.1:c.1933C>T	p.His645Tyr	p.H645Y	ENST00000524377	NM_002529.3	645	Cat/Tat																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16085996	16085996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	127	561	0	ENST00000281043.3:c.1172G>A	p.Arg391His	p.R391H	ENST00000281043	NM_005378.4	391	cGc/cAc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29416659	29416659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	76	529	3	ENST00000389048.3:c.4294C>T	p.Arg1432Trp	p.R1432W	ENST00000389048	NM_004304.4	1432	Cgg/Tgg																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48030560	48030560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	126	799	0	ENST00000234420.5:c.3174T>A	p.Asp1058Glu	p.D1058E	ENST00000234420	NM_000179.2	1058	gaT/gaA																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48030670	48030670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	155	913	3	ENST00000234420.5:c.3284G>A	p.Arg1095His	p.R1095H	ENST00000234420	NM_000179.2	1095	cGc/cAc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52441297	52441297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	121	739	0	ENST00000460680.1:c.473G>A	p.Gly158Asp	p.G158D	ENST00000460680	NM_004656.3	158	gGc/gAc																																												NEWRECORD																																		
SOX2	0	MSKCC	GRCh37	3	181430488	181430488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	126	698	0	ENST00000325404.1:c.340C>T	p.Arg114Trp	p.R114W	ENST00000325404	NM_003106.3	114	Cgg/Tgg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66356133	66356133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	110	714	3	ENST00000273854.3:c.1364G>A	p.Arg455Gln	p.R455Q	ENST00000273854	NM_004439.5	455	cGg/cAg																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153245522	153245522	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	73	607	0	ENST00000281708.4:c.1669G>T	p.Gly557Ter	p.G557*	ENST00000281708	NM_033632.3	557	Gga/Tga																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187628340	187628340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	72	443	2	ENST00000441802.2:c.2642G>A	p.Arg881His	p.R881H	ENST00000441802	NM_005245.3	881	cGc/cAc																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149495484	149495484	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	184	1048	0	ENST00000261799.4:c.3163T>C	p.Ser1055Pro	p.S1055P	ENST00000261799	NM_002609.3	1055	Tcc/Ccc																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176687001	176687001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	122	704	1	ENST00000439151.2:c.4978C>T	p.Arg1660Cys	p.R1660C	ENST00000439151	NM_022455.4	1660	Cgc/Tgc																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176721397	176721397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	107	741	2	ENST00000439151.2:c.7028C>T	p.Pro2343Leu	p.P2343L	ENST00000439151	NM_022455.4	2343	cCc/cTc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55231457	55231457	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	144	834	0	ENST00000275493.2:c.1663T>C	p.Cys555Arg	p.C555R	ENST00000275493	NM_005228.3	555	Tgc/Cgc																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97912349	97912349	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182879858		P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	129	634	2	ENST00000289081.3:c.542C>T	p.Ala181Val	p.A181V	ENST00000289081	NM_000136.2	181	gCg/gTg																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133750297	133750297	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	152	839	1	ENST00000318560.5:c.1128G>T	p.Leu376Phe	p.L376F	ENST00000318560	NM_005157.4	376	ttG/ttT																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108198471	108198471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	95	472	0	ENST00000278616.4:c.7075A>G	p.Thr2359Ala	p.T2359A	ENST00000278616	NM_000051.3	2359	Acc/Gcc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344536	118344536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	156	866	0	ENST00000534358.1:c.2662T>C	p.Ser888Pro	p.S888P	ENST00000534358	NM_005933.3	888	Tca/Cca																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118375783	118375783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	161	847	2	ENST00000534358.1:c.9176C>T	p.Pro3059Leu	p.P3059L	ENST00000534358	NM_005933.3	3059	cCg/cTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49446768	49446768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	150	769	0	ENST00000301067.7:c.1042C>T	p.Arg348Cys	p.R348C	ENST00000301067	NM_003482.3	348	Cgc/Tgc																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57857515	57857515	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	474	1119	2	ENST00000228682.2:c.41G>A	p.Gly14Asp	p.G14D	ENST00000228682	NM_005269.2	14	gGc/gAc																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81610059	81610059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	89	684	0	ENST00000298171.2:c.1657G>A	p.Ala553Thr	p.A553T	ENST00000298171	NM_000369.2	553	Gcc/Acc																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95582935	95582935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	120	675	3	ENST00000343455.3:c.1607G>A	p.Arg536His	p.R536H	ENST00000343455	NM_177438.2	536	cGt/cAt																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90628530	90628530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	211	865	2	ENST00000330062.3:c.1057C>T	p.Arg353Cys	p.R353C	ENST00000330062	NM_002168.2	353	Cgc/Tgc																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91304459	91304459	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	102	471	0	ENST00000355112.3:c.1856T>G	p.Phe619Cys	p.F619C	ENST00000355112	NM_000057.2	619	tTc/tGc																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	359996	359996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	184	989	4	ENST00000262320.3:c.1093C>T	p.Arg365Trp	p.R365W	ENST00000262320	NM_003502.3	365	Cgg/Tgg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3781216	3781216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	110	631	1	ENST00000262367.5:c.5149C>T	p.Arg1717Cys	p.R1717C	ENST00000262367	NM_004380.2	1717	Cgc/Tgc																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89845230	89845230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	189	923	3	ENST00000389301.3:c.1805C>T	p.Ala602Val	p.A602V	ENST00000389301	NM_000135.2	602	gCg/gTg																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30264357	30264357	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	43	322	0	ENST00000322652.5:c.92T>C	p.Val31Ala	p.V31A	ENST00000322652	NM_015355.2	31	gTg/gCg																																												NEWRECORD																																		
PRKAR1A	0	MSKCC	GRCh37	17	66526513	66526513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	107	676	0	ENST00000358598.2:c.1069C>T	p.Arg357Cys	p.R357C	ENST00000358598	NM_212471.2	357	Cgt/Tgt																																												NEWRECORD																																		
MAP2K2	0	MSKCC	GRCh37	19	4117478	4117478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	36	413	0	ENST00000262948.5:c.242G>A	p.Gly81Asp	p.G81D	ENST00000262948	NM_030662.3	81	gGc/gAc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15299983	15299983	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	108	555	1	ENST00000263388.2:c.1195G>A	p.Ala399Thr	p.A399T	ENST00000263388	NM_000435.2	399	Gcc/Acc																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50917060	50917060	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139235742		P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	242	1101	3	ENST00000440232.2:c.2312C>T	p.Ala771Val	p.A771V	ENST00000440232	NM_002691.3	771	gCg/gTg																																												NEWRECORD																																		
BCL2L1	0	MSKCC	GRCh37	20	30309724	30309724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	260	626	1	ENST00000307677.4:c.298C>T	p.Arg100Trp	p.R100W	ENST00000307677	NM_138578.1	100	Cgg/Tgg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41513539	41513539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	128	723	5	ENST00000263253.7:c.443C>T	p.Thr148Met	p.T148M	ENST00000263253	NM_001429.3	148	aCg/aTg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70340958	70340958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	191	896	0	ENST00000374080.3:c.691C>T	p.Arg231Trp	p.R231W	ENST00000374080		231	Cgg/Tgg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3824569	3824569	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	97	646	0	ENST00000262367.5:c.2283+1del		p.X761_splice	ENST00000262367	NM_004380.2	761																																													NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245739	46245739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	264	714	1	ENST00000334344.6:c.3834del	p.Ser1279AlafsTer16	p.S1279Afs*16	ENST00000334344	NM_152641.2	1278	aCc/ac																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30729880	30729881	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	46	315	0	ENST00000359013.4:c.1478_1479delAA	p.Lys493ArgfsTer3	p.K493Rfs*3	ENST00000359013	NM_001024847.2	492	gtAAaa/gtaa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72829585	72829585	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	192	1191	1	ENST00000268489.5:c.6996delA	p.Lys2332AsnfsTer44	p.K2332Nfs*44	ENST00000268489	NM_006885.3	2332	aaA/aa																																												NEWRECORD																																		
PIK3C2G	5288	MSKCC	GRCh37	12	18435201	18435202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	130	742	0	ENST00000266497.5:c.192dup	p.Val65CysfsTer16	p.V65Cfs*16	ENST00000266497		62	-/T																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61147771	61147771	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	65	364	0	ENST00000295025.8:c.1086delA	p.Glu363AsnfsTer11	p.E363Nfs*11	ENST00000295025	NM_002908.2	361	Aaa/aa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76855019	76855019	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	127	913	4	ENST00000373344.5:c.5817del	p.Asp1940IlefsTer15	p.D1940Ifs*15	ENST00000373344	NM_000489.3	1939	aaA/aa																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138413710	138413710	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	125	550	7	ENST00000289153.2:c.1810delC	p.Arg604GlyfsTer4	p.R604Gfs*4	ENST00000289153	NM_006219.2	604	Cgg/gg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156846336	156846336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	140	435	2	ENST00000524377.1:c.1777C>T	p.Arg593Trp	p.R593W	ENST00000524377	NM_002529.3	593	Cgg/Tgg																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149973	202149973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	85	368	2	ENST00000358485.4:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000358485	NM_001080125.1	472	Cga/Tga																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209104677	209104677	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	144	393	0	ENST00000345146.2:c.901A>G	p.Lys301Glu	p.K301E	ENST00000345146	NM_005896.2	301	Aag/Gag																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225370792	225370792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	233	445	0	ENST00000264414.4:c.1087G>A	p.Asp363Asn	p.D363N	ENST00000264414	NM_003590.4	363	Gac/Aac																																												NEWRECORD																																		
PDCD1	0	MSKCC	GRCh37	2	242794773	242794773	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	32	178	0	ENST00000334409.5:c.436G>T	p.Glu146Ter	p.E146*	ENST00000334409	NM_005018.2	146	Gag/Tag																																												NEWRECORD																																		
MYD88	0	MSKCC	GRCh37	3	38180190	38180190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	34	303	0	ENST00000396334.3:c.38C>T	p.Ala13Val	p.A13V	ENST00000396334	NM_002468.4	13	gCc/gTc																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119666150	119666150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	137	409	2	ENST00000316626.5:c.331C>T	p.Arg111Ter	p.R111*	ENST00000316626		111	Cga/Tga																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128202731	128202731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	162	434	0	ENST00000341105.2:c.989G>A	p.Arg330Gln	p.R330Q	ENST00000341105	NM_032638.4	330	cGa/cAa																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808373	1808373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	27	403	0	ENST00000260795.2:c.2131C>A	p.His711Asn	p.H711N	ENST00000260795		711	Cac/Aac																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153332936	153332936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	65	216	0	ENST00000281708.4:c.20C>A	p.Ser7Tyr	p.S7Y	ENST00000281708	NM_033632.3	7	tCt/tAt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187518309	187518309	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs191917852		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	25	79	0	ENST00000441802.2:c.12385G>A	p.Asp4129Asn	p.D4129N	ENST00000441802	NM_005245.3	4129	Gac/Aac																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	393357	393357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	155	326	0	ENST00000380956.4:c.205G>A	p.Ala69Thr	p.A69T	ENST00000380956	NM_001195286.1	69	Gcg/Acg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32181031	32181031	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	136	326	0	ENST00000375023.3:c.2321-2A>G		p.X774_splice	ENST00000375023	NM_004557.3	774																																													NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33286841	33286841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	103	267	0	ENST00000374542.5:c.2096G>A	p.Cys699Tyr	p.C699Y	ENST00000374542	NM_001141970.1	699	tGc/tAc																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112020823	112020823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	457	826	1	ENST00000368678.4:c.748A>G	p.Thr250Ala	p.T250A	ENST00000368678		250	Acc/Gcc																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150005305	150005305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	190	456	0	ENST00000253339.5:c.920C>T	p.Thr307Ile	p.T307I	ENST00000253339		307	aCt/aTt																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	138	356	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90958499	90958499	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	105	297	2	ENST00000265433.3:c.1939A>G	p.Ser647Gly	p.S647G	ENST00000265433	NM_002485.4	647	Agt/Ggt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8376681	8376681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	91	389	0	ENST00000356435.5:c.4432G>A	p.Gly1478Arg	p.G1478R	ENST00000356435		1478	Gga/Aga																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87482247	87482247	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	156	507	0	ENST00000277120.3:c.1534G>T	p.Gly512Cys	p.G512C	ENST00000277120		512	Ggt/Tgt																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100462	8100462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	141	521	0	ENST00000346208.3:c.436G>A	p.Ala146Thr	p.A146T	ENST00000346208		146	Gcc/Acc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43615128	43615128	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	64	484	0	ENST00000355710.3:c.2542A>G	p.Met848Val	p.M848V	ENST00000355710	NM_020975.4	848	Atg/Gtg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245682	46245682	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	186	472	0	ENST00000334344.6:c.3776A>G	p.His1259Arg	p.H1259R	ENST00000334344	NM_152641.2	1259	cAt/cGt																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36986668	36986668	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			14	17	14	0	ENST00000354822.5:c.1021G>A	p.Ala341Thr	p.A341T	ENST00000354822	NM_001079668.2	341	Gcc/Acc																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95560488	95560488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	18	106	0	ENST00000343455.3:c.5101T>C	p.Tyr1701His	p.Y1701H	ENST00000343455	NM_177438.2	1701	Tac/Cac																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42000406	42000406	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	94	552	0	ENST00000219905.7:c.2425G>T	p.Gly809Cys	p.G809C	ENST00000219905	NM_001164273.1	809	Ggt/Tgt																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857925	9857925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	129	363	0	ENST00000330684.3:c.3476G>A	p.Arg1159His	p.R1159H	ENST00000330684	NM_001134407.1	1159	cGc/cAc																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56871563	56871563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	111	655	0	ENST00000308159.5:c.1943C>A	p.Pro648His	p.P648H	ENST00000308159	NM_014669.4	648	cCt/cAt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	288	471	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5231506	5231506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	223	429	2	ENST00000357368.4:c.1970G>A	p.Arg657His	p.R657H	ENST00000357368	NM_002850.3	657	cGc/cAc																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7117408	7117408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	52	263	0	ENST00000302850.5:c.3808C>T	p.Arg1270Cys	p.R1270C	ENST00000302850	NM_000208.2	1270	Cgc/Tgc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602707	10602707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	156	383	0	ENST00000171111.5:c.871C>A	p.Leu291Met	p.L291M	ENST00000171111	NM_203500.1	291	Ctg/Atg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11098557	11098557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	150	416	1	ENST00000344626.4:c.1075C>T	p.Arg359Trp	p.R359W	ENST00000344626	NM_003072.3	359	Cgg/Tgg																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54963247	54963247	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	126	464	0	ENST00000312783.6:c.7C>T	p.Arg3Ter	p.R3*	ENST00000312783	NM_198436.1	3	Cga/Tga																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24159023	24159023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	130	376	0	ENST00000263121.7:c.695C>T	p.Thr232Met	p.T232M	ENST00000263121	NM_003073.3	232	aCg/aTg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47030658	47030658	+	intron_variant	Intron	SNP	G	G	A			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	35	361	2	ENST00000329236.7:c.201+1761G>A		p.*67*	ENST00000329236	NM_001204466.1																																														NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108205782	108205782	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	116	388	0	ENST00000278616.4:c.8101del	p.Ile2701Ter	p.I2701*	ENST00000278616	NM_000051.3	2699	ccA/cc																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226570840	226570841	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	C			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	48	276	0	ENST00000366794.5:c.1055_1056delinsG	p.Lys352SerfsTer29	p.K352Sfs*29	ENST00000366794	NM_001618.3	352	aAA/aG																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	128	205	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149799	202149799	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	60	382	0	ENST00000358485.4:c.1245delT	p.Phe415LeufsTer26	p.F415Lfs*26	ENST00000358485	NM_001080125.1	414	Ttt/tt																																												NEWRECORD																																		
DCUN1D1	0	MSKCC	GRCh37	3	182683472	182683472	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	118	396	0	ENST00000292782.4:c.73delA	p.Thr25GlnfsTer3	p.T25Qfs*3	ENST00000292782	NM_020640.2	25	Aca/ca																																												NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	155	436	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	245	608	5	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	282	480	6	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																												NEWRECORD																																		
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	180	367	2	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t																																												NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41574678	41574679	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs754418509		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	102	671	1	ENST00000263253.7:c.6970dup	p.His2324ProfsTer55	p.H2324Pfs*55	ENST00000263253	NM_001429.3	2321	-/C																																												NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52584583	52584583	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	39	494	0	ENST00000394830.3:c.4430del	p.Pro1477LeufsTer12	p.P1477Lfs*12	ENST00000394830	NM_018313.4	1477	cCt/ct																																												NEWRECORD																																		
SH2B3	10019	MSKCC	GRCh37	12	111885939	111885939	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	565	654	0	ENST00000341259.2:c.1566del	p.Glu523SerfsTer25	p.E523Sfs*25	ENST00000341259	NM_005475.2	521	Ccc/cc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	129	400	6	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	73	280	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	73	158	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226567719	226567719	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	86	431	1	ENST00000366794.5:c.1447delG	p.Ala483GlnfsTer3	p.A483Qfs*3	ENST00000366794	NM_001618.3	483	Gca/ca																																												NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0007688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	81	304	3	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																												NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	171	239	3	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	129	222	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	46	45	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	46	45	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2121791	2121792	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	78	161	0	ENST00000219476.3:c.1959_1960delAG	p.Gly654LeufsTer2	p.G654Lfs*2	ENST00000219476	NM_000548.3	651	ccAGag/ccag																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180030323	180030323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	136	292	0	ENST00000261937.6:c.3961C>T	p.Arg1321Trp	p.R1321W	ENST00000261937	NM_182925.4	1321	Cgg/Tgg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212285327	212285327	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143134749		P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	120	182	0	ENST00000342788.4:c.2974C>T	p.Arg992Cys	p.R992C	ENST00000342788	NM_005235.2	992	Cgt/Tgt																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11141426	11141426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11537676		P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	151	218	0	ENST00000344626.4:c.3403C>T	p.Arg1135Trp	p.R1135W	ENST00000344626	NM_003072.3	1135	Cgg/Tgg																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	80	103	0	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11138521	11138521	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	208	243	0	ENST00000344626.4:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000344626	NM_003072.3	1093	Cga/Tga																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	99	75	1	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																												NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151874148	151874148	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs747256476		P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	308	157	7	ENST00000262189.6:c.8390del	p.Lys2797ArgfsTer26	p.K2797Rfs*26	ENST00000262189	NM_170606.2	2797	aAg/ag																																												NEWRECORD																																		
PAX5	5079	MSKCC	GRCh37	9	36882050	36882050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	129	188	0	ENST00000358127.4:c.963del	p.Ala322LeufsTer11	p.A322Lfs*11	ENST00000358127	NM_001280556.1	321	ccC/cc																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	152	247	1	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258485	16258485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	117	142	0	ENST00000375759.3:c.5750G>A	p.Arg1917His	p.R1917H	ENST00000375759	NM_015001.2	1917	cGc/cAc																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65325881	65325881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	112	148	0	ENST00000342505.4:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000342505	NM_002227.2	414	cGg/cAg																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226553677	226553677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147825810		P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	129	213	0	ENST00000366794.5:c.2483C>T	p.Ala828Val	p.A828V	ENST00000366794	NM_001618.3	828	gCg/gTg																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25497847	25497847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	136	209	0	ENST00000264709.3:c.602G>A	p.Arg201His	p.R201H	ENST00000264709	NM_175629.2	201	cGc/cAc																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47702211	47702211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	126	218	0	ENST00000233146.2:c.1807G>T	p.Asp603Tyr	p.D603Y	ENST00000233146	NM_000251.2	603	Gat/Tat																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61710119	61710119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	118	160	0	ENST00000401558.2:c.2785G>A	p.Val929Ile	p.V929I	ENST00000401558	NM_003400.3	929	Gtt/Att																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204735422	204735422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	91	158	0	ENST00000302823.3:c.223C>T	p.Arg75Trp	p.R75W	ENST00000302823	NM_005214.4	75	Cgg/Tgg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47163278	47163278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	216	318	0	ENST00000409792.3:c.2848C>T	p.Arg950Cys	p.R950C	ENST00000409792	NM_014159.6	950	Cgt/Tgt																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176517475	176517475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	133	191	0	ENST00000292408.4:c.176G>A	p.Arg59Gln	p.R59Q	ENST00000292408	NM_213647.1	59	cGg/cAg																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180030232	180030232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	194	262	0	ENST00000261937.6:c.4052C>T	p.Pro1351Leu	p.P1351L	ENST00000261937	NM_182925.4	1351	cCg/cTg																																												NEWRECORD																																		
PRDM1	639	MSKCC	GRCh37	6	106552909	106552909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	195	344	1	ENST00000369096.4:c.874C>T	p.Pro292Ser	p.P292S	ENST00000369096	NM_001198.3	292	Ccc/Tcc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117662652	117662652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	111	201	0	ENST00000368508.3:c.4813G>A	p.Glu1605Lys	p.E1605K	ENST00000368508	NM_002944.2	1605	Gaa/Aaa																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2959117	2959117	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	86	193	0	ENST00000396946.4:c.2399T>A	p.Val800Asp	p.V800D	ENST00000396946	NM_032415.4	800	gTt/gAt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151845228	151845228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	144	166	0	ENST00000262189.6:c.13784G>A	p.Arg4595His	p.R4595H	ENST00000262189	NM_170606.2	4595	cGc/cAc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145737578	145737578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	96	177	0	ENST00000428558.2:c.3185G>A	p.Arg1062Gln	p.R1062Q	ENST00000428558	NM_004260.3	1062	cGg/cAg																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93650071	93650071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	201	241	0	ENST00000375746.1:c.1622C>T	p.Pro541Leu	p.P541L	ENST00000375746	NM_001174167.1	541	cCg/cTg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70446278	70446278	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147119124		P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	201	270	1	ENST00000373644.4:c.5218C>T	p.Arg1740Cys	p.R1740C	ENST00000373644	NM_030625.2	1740	Cgc/Tgc																																												NEWRECORD																																		
SDHAF2	0	MSKCC	GRCh37	11	61205534	61205534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140191819		P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	135	203	0	ENST00000301761.2:c.319C>T	p.Arg107Cys	p.R107C	ENST00000301761	NM_017841.2	107	Cgc/Tgc																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1025569	1025569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	178	266	0	ENST00000358495.3:c.806G>A	p.Arg269Gln	p.R269Q	ENST00000358495	NM_134424.2	269	cGg/cAg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133219908	133219908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	134	246	0	ENST00000320574.5:c.4453C>T	p.Arg1485Cys	p.R1485C	ENST00000320574	NM_006231.2	1485	Cgc/Tgc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133233948	133233948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	118	166	0	ENST00000320574.5:c.3446C>T	p.Ala1149Val	p.A1149V	ENST00000320574	NM_006231.2	1149	gCg/gTg																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21563296	21563296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	169	214	1	ENST00000382592.4:c.623C>T	p.Pro208Leu	p.P208L	ENST00000382592	NM_014572.2	208	cCg/cTg																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66777404	66777404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	85	239	0	ENST00000307102.5:c.770C>T	p.Ala257Val	p.A257V	ENST00000307102	NM_002755.3	257	gCg/gTg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858403	9858403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	93	145	0	ENST00000330684.3:c.2998G>A	p.Val1000Met	p.V1000M	ENST00000330684	NM_001134407.1	1000	Gtg/Atg																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30133239	30133239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	346	314	0	ENST00000263025.4:c.259C>T	p.Arg87Trp	p.R87W	ENST00000263025	NM_002746.2	87	Cgg/Tgg																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881117	37881117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	164	229	0	ENST00000269571.5:c.2446C>T	p.Arg816Cys	p.R816C	ENST00000269571		816	Cgc/Tgc																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7128881	7128881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	35	252	0	ENST00000302850.5:c.2927A>G	p.Tyr976Cys	p.Y976C	ENST00000302850	NM_000208.2	976	tAt/tGt																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7143000	7143000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	116	222	0	ENST00000302850.5:c.2369C>T	p.Thr790Met	p.T790M	ENST00000302850	NM_000208.2	790	aCg/aTg																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10257072	10257072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	154	214	0	ENST00000340748.4:c.2801G>A	p.Arg934Gln	p.R934Q	ENST00000340748		934	cGa/cAa																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15271819	15271819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	26	59	0	ENST00000263388.2:c.6620G>A	p.Arg2207Gln	p.R2207Q	ENST00000263388	NM_000435.2	2207	cGg/cAg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52705200	52705200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	159	206	0	ENST00000322088.6:c.82C>T	p.Arg28Cys	p.R28C	ENST00000322088	NM_014225.5	28	Cgc/Tgc																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39922048	39922048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	260	155	0	ENST00000378444.4:c.4124G>A	p.Arg1375Gln	p.R1375Q	ENST00000378444	NM_001123385.1	1375	cGg/cAg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44928872	44928872	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	218	116	2	ENST00000377967.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000377967	NM_021140.2	658	Cga/Tga																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47429004	47429004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	212	140	0	ENST00000377045.4:c.1367G>A	p.Arg456Gln	p.R456Q	ENST00000377045	NM_001654.4	456	cGa/cAa																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53223488	53223488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	116	81	0	ENST00000375401.3:c.3871C>T	p.Arg1291Cys	p.R1291C	ENST00000375401	NM_004187.3	1291	Cgc/Tgc																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53253966	53253966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	216	151	0	ENST00000375401.3:c.106C>T	p.Pro36Ser	p.P36S	ENST00000375401	NM_004187.3	36	Ccc/Tcc																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29130441	29130441	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	150	205	0	ENST00000328354.6:c.269del	p.Pro90LeufsTer20	p.P90Lfs*20	ENST00000328354	NM_007194.3	90	cCt/ct																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40741811	40741813	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	75	136	0	ENST00000392038.2:c.1159_1161del	p.Lys387del	p.K387del	ENST00000392038	NM_001626.4	387	AAG/-																																												NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15272337	15272337	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs776990686		P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	82	138	0	ENST00000263388.2:c.6102del	p.Gly2035ValfsTer50	p.G2035Vfs*50	ENST00000263388	NM_000435.2	2034	ccC/cc																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148514998	148515000	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	164	242	2	ENST00000320356.2:c.1209_1211del	p.Glu404del	p.E404del	ENST00000320356	NM_004456.4	403	gaAGAg/gag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426222	49426223	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	112	160	0	ENST00000301067.7:c.12265_12266delCT	p.Leu4089AlafsTer17	p.L4089Afs*17	ENST00000301067	NM_003482.3	4089	CTg/g																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49444932	49444933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	27	39	0	ENST00000301067.7:c.2533dup	p.Arg845ProfsTer3	p.R845Pfs*3	ENST00000301067	NM_003482.3	845	cgg/cCgg																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156288	106156289	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAC			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	82	201	0	ENST00000380013.4:c.1201_1203dup	p.Pro401dup	p.P401dup	ENST00000380013	NM_001127208.2	401	aca/aCACca																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3817786	3817790	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTC	TCCTC	-			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	216	330	0	ENST00000262367.5:c.3181_3185del	p.Glu1061ArgfsTer4	p.E1061Rfs*4	ENST00000262367	NM_004380.2	1061	GAGGAa/a																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30322767	30322768	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	106	152	0	ENST00000322652.5:c.1786dup	p.Thr596AsnfsTer6	p.T596Nfs*6	ENST00000322652	NM_015355.2	594	gaa/gAaa																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149818	202149819	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	78	189	0	ENST00000358485.4:c.1264dup	p.Asp422GlyfsTer2	p.D422Gfs*2	ENST00000358485	NM_001080125.1	420	cag/caGg																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81422080	81422081	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	60	164	0	ENST00000298171.2:c.59dup	p.Gly21ArgfsTer41	p.G21Rfs*41	ENST00000298171	NM_000369.2	19	ctg/ctGg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2108788	2108788	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	116	244	0	ENST00000219476.3:c.894del	p.Phe298LeufsTer65	p.F298Lfs*65	ENST00000219476	NM_000548.3	297	Ttt/tt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	90	362	0	ENST00000324856.7:c.1650dupC	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0009967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	140	442	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32417823	32417823	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	90	345	2	ENST00000332351.3:c.1229T>C	p.Met410Thr	p.M410T	ENST00000332351	NM_024426.4	410	aTg/aCg																																												NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	127	351	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0008516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	312	505	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852590	63852591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	37	487	0	ENST00000279873.7:c.3368_3369insA	p.Leu1124AlafsTer37	p.L1124Afs*37	ENST00000279873	NM_032199.2	1123	tcg/tcAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578472	7578491	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGGGGTGTGGAATCAAC	GGCGGGGGTGTGGAATCAAC	-			P-0008516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	265	460	0	ENST00000269305.4:c.439_458del	p.Val147ArgfsTer27	p.V147Rfs*27	ENST00000269305	NM_001126112.2	147	GTTGATTCCACACCCCCGCCc/c																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519925		P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	152	303	0	ENST00000263967.3:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000263967	NM_006218.2	453	Gaa/Caa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578499	7578499	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	405	408	1	ENST00000269305.4:c.431A>C	p.Gln144Pro	p.Q144P	ENST00000269305	NM_001126112.2	144	cAg/cCg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27058079	27058079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	66	95	0	ENST00000324856.7:c.1787G>T	p.Arg596Leu	p.R596L	ENST00000324856	NM_006015.4	596	cGc/cTc																																												NEWRECORD																																		
INSRR	0	MSKCC	GRCh37	1	156811503	156811503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	36	37	0	ENST00000368195.3:c.3481C>A	p.Pro1161Thr	p.P1161T	ENST00000368195	NM_014215.2	1161	Ccc/Acc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29541241	29541241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	115	375	0	ENST00000389048.3:c.1576G>T	p.Val526Phe	p.V526F	ENST00000389048	NM_004304.4	526	Gtc/Ttc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212537945	212537945	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	411	378	0	ENST00000342788.4:c.1660G>T	p.Glu554Ter	p.E554*	ENST00000342788	NM_005235.2	554	Gag/Tag																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157192782	157192782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	373	395	0	ENST00000346085.5:c.1772G>T	p.Trp591Leu	p.W591L	ENST00000346085	NM_020732.3	591	tGg/tTg																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93606188	93606188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	312	245	0	ENST00000375746.1:c.8G>A	p.Ser3Asn	p.S3N	ENST00000375746	NM_001174167.1	3	aGc/aAc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108201002	108201002	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	179	308	0	ENST00000278616.4:c.7369G>C	p.Glu2457Gln	p.E2457Q	ENST00000278616	NM_000051.3	2457	Gag/Cag																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133248867	133248867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1310	265	402	1	ENST00000320574.5:c.1728G>T	p.Lys576Asn	p.K576N	ENST00000320574	NM_006231.2	576	aaG/aaT																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28610105	28610105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1703	114	493	0	ENST00000241453.7:c.1385G>A	p.Trp462Ter	p.W462*	ENST00000241453	NM_004119.2	462	tGg/tAg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49039133	49039133	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	224	146	1	ENST00000267163.4:c.2212-1G>A		p.X738_splice	ENST00000267163	NM_000321.2	738																																													NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99465517	99465517	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1374	243	467	0	ENST00000268035.6:c.2342G>C	p.Arg781Thr	p.R781T	ENST00000268035	NM_000875.3	781	aGa/aCa																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1206915	1206915	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	111	161	0	ENST00000326873.7:c.3G>A	p.Met1?	p.M1?	ENST00000326873	NM_000455.4	1	atG/atA																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11144179	11144179	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	309	293	0	ENST00000344626.4:c.3760G>T	p.Glu1254Ter	p.E1254*	ENST00000344626	NM_003072.3	1254	Gag/Tag																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40757449	40757449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1689	243	444	0	ENST00000373198.4:c.2849T>C	p.Leu950Pro	p.L950P	ENST00000373198	NM_133170.3	950	cTg/cCg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49444986	49444987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0011303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	96	171	0	ENST00000301067.7:c.2479dup	p.Gln827ProfsTer3	p.Q827Pfs*3	ENST00000301067	NM_003482.3	827	caa/cCaa																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	383	327	0	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	37	83	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	768	427	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42866376	42866376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	694	307	3	ENST00000398585.3:c.256G>A	p.Val86Met	p.V86M	ENST00000398585	NM_001135099.1	86	Gtg/Atg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8389254	8389254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	277	418	1	ENST00000356435.5:c.4364C>A	p.Thr1455Lys	p.T1455K	ENST00000356435		1455	aCa/aAa																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060643	38060643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1528	529	599	0	ENST00000250448.2:c.1346C>T	p.Pro449Leu	p.P449L	ENST00000250448	NM_004496.3	449	cCc/cTc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176675	112176676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	220	332	0	ENST00000257430.4:c.5390dup	p.Asn1797LysfsTer2	p.N1797Kfs*2	ENST00000257430	NM_000038.5	1795	tca/tcAa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	93	387	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56179386	56179386	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	55	324	0	ENST00000399503.3:c.3702del	p.Lys1234AsnfsTer11	p.K1234Nfs*11	ENST00000399503	NM_005921.1	1233	gcA/gc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56152532	56152533	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	34	308	0	ENST00000399503.3:c.589dup	p.Trp197LeufsTer11	p.W197Lfs*11	ENST00000399503	NM_005921.1	196	-/T																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204735578	204735578	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	57	69	0	ENST00000302823.3:c.379T>A	p.Tyr127Asn	p.Y127N	ENST00000302823	NM_005214.4	127	Tac/Aac																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52713703	52713703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	63	156	0	ENST00000394830.3:c.25A>G	p.Thr9Ala	p.T9A	ENST00000394830	NM_018313.4	9	Acc/Gcc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	39	123	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0000523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	58	174	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244781	46244782	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1153	207	278	0	ENST00000334344.6:c.2876dupC	p.Val960SerfsTer8	p.V960Sfs*8	ENST00000334344	NM_152641.2	959	aca/aCca																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	53	394	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52692289	52692290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGAAGCTGTAGCTACAACTATGGCTTT			P-0005944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	40	660	0	ENST00000394830.3:c.570_571insAAAGCCATAGTTGTAGCTACAGCTTCTT	p.Glu191LysfsTer10	p.E191Kfs*10	ENST00000394830	NM_018313.4	190	-/AAAGCCATAGTTGTAGCTACAGCTTCTT																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29652971	29652971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	55	413	0	ENST00000358273.4:c.4969G>C	p.Asp1657His	p.D1657H	ENST00000358273	NM_001042492.2	1657	Gac/Cac																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115957	8115958	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGTGG			P-0004982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	145	162	0	ENST00000346208.3:c.1303_1304insGGTGG	p.Pro435ArgfsTer42	p.P435Rfs*42	ENST00000346208		435	ccc/cGGTGGcc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			812	154	467	3	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			919	353	501	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55259502	55259502	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			919	346	490	1	ENST00000275493.2:c.2560A>T	p.Thr854Ser	p.T854S	ENST00000275493	NM_005228.3	854	Aca/Tca																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88678619	88678619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148888023		P-0002085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			287	55	171	1	ENST00000360948.2:c.917G>A	p.Arg306His	p.R306H	ENST00000360948	NM_001012338.2	306	cGt/cAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578291	7578291	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0002085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			449	279	398	0	ENST00000269305.4:c.560-2A>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																													NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52702569	52702569	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			394	259	390	0	ENST00000394830.3:c.329delA	p.Asn110IlefsTer3	p.N110Ifs*3	ENST00000394830	NM_018313.4	110	aAt/at																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717713	89717714	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			306	211	262	0	ENST00000371953.3:c.740dup	p.Leu247PhefsTer6	p.L247Ffs*6	ENST00000371953	NM_000314.4	246	-/T																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11138584	11138584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			496	291	422	0	ENST00000344626.4:c.3340G>C	p.Asp1114His	p.D1114H	ENST00000344626	NM_003072.3	1114	Gat/Cat																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11138623	11138623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			417	214	332	0	ENST00000344626.4:c.3379G>C	p.Asp1127His	p.D1127H	ENST00000344626	NM_003072.3	1127	Gat/Cat																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29911288	29911289	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002085-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			297	28	153	0	ENST00000376809.5:c.589dup	p.Glu197GlyfsTer24	p.E197Gfs*24	ENST00000376809	NM_002116.7	196	ctg/ctGg																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	230	530	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	305	538	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																												NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	178	939	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																												NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	309	791	1	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41744048	41744048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	149	780	0	ENST00000301178.4:c.983C>T	p.Thr328Met	p.T328M	ENST00000301178	NM_021913.4	328	aCg/aTg																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	132	548	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	154	402	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30671004	30671005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	130	688	0	ENST00000376406.3:c.5741dup	p.Ser1915LysfsTer15	p.S1915Kfs*15	ENST00000376406	NM_014641.2	1914	gga/ggGa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187521298	187521299	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	155	989	0	ENST00000441802.2:c.11856dupT	p.Gly3953TrpfsTer19	p.G3953Wfs*19	ENST00000441802	NM_005245.3	3952	-/T																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47702265	47702265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	236	742	2	ENST00000233146.2:c.1861C>T	p.Arg621Ter	p.R621*	ENST00000233146	NM_000251.2	621	Cga/Tga																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27088682	27088682	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	63	866	2	ENST00000324856.7:c.2296del	p.Gln766SerfsTer67	p.Q766Sfs*67	ENST00000324856	NM_006015.4	764	tCc/tc																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12037474	12037474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	105	582	0	ENST00000396373.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000396373	NM_001987.4	369	Cgg/Tgg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38950625	38950626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1127	220	1028	0	ENST00000357387.3:c.3324dup	p.His1109ThrfsTer3	p.H1109Tfs*3	ENST00000357387	NM_152756.3	1108	-/A																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64138941	64138941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	79	472	1	ENST00000334205.4:c.2313del	p.Ser772ProfsTer12	p.S772Pfs*12	ENST00000334205	NM_003942.2	770	Ccc/cc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100195	27100195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	110	452	1	ENST00000324856.7:c.3991C>T	p.Gln1331Ter	p.Q1331*	ENST00000324856	NM_006015.4	1331	Cag/Tag																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	258	1187	2	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	127	688	1	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98240375	98240375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	136	585	1	ENST00000331920.6:c.1309G>A	p.Val437Ile	p.V437I	ENST00000331920	NM_000264.3	437	Gtc/Atc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27097609	27097609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	83	686	0	ENST00000324856.7:c.3199-1G>A		p.X1067_splice	ENST00000324856	NM_006015.4	1067																																													NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15366129	15366129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	49	695	0	ENST00000263377.2:c.2026C>T	p.Arg676Trp	p.R676W	ENST00000263377	NM_058243.2	676	Cgg/Tgg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157100302	157100302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	88	474	0	ENST00000346085.5:c.1243delG	p.Ala415ProfsTer15	p.A415Pfs*15	ENST00000346085	NM_020732.3	413	tcG/tc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11184622	11184622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	186	745	1	ENST00000361445.4:c.6595A>G	p.Met2199Val	p.M2199V	ENST00000361445	NM_004958.3	2199	Atg/Gtg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106978	27106978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	88	430	2	ENST00000324856.7:c.6589G>T	p.Gly2197Cys	p.G2197C	ENST00000324856	NM_006015.4	2197	Ggc/Tgc																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	176085815	176085815	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	119	519	0	ENST00000367669.3:c.971G>A	p.Ser324Asn	p.S324N	ENST00000367669	NM_022457.5	324	aGt/aAt																																												NEWRECORD																																		
SDHAF2	0	MSKCC	GRCh37	11	61205115	61205115	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	160	712	1	ENST00000301761.2:c.55C>A	p.His19Asn	p.H19N	ENST00000301761	NM_017841.2	19	Cac/Aac																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46233265	46233265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	65	594	0	ENST00000334344.6:c.1484T>C	p.Val495Ala	p.V495A	ENST00000334344	NM_152641.2	495	gTa/gCa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49425986	49425986	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	53	891	0	ENST00000301067.7:c.12502A>G	p.Thr4168Ala	p.T4168A	ENST00000301067	NM_003482.3	4168	Aca/Gca																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426973	49426973	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	59	515	3	ENST00000301067.7:c.11515del	p.Gln3839SerfsTer42	p.Q3839Sfs*42	ENST00000301067	NM_003482.3	3839	Cag/ag																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49448480	49448480	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	67	676	0	ENST00000301067.7:c.231del	p.His77GlnfsTer53	p.H77Qfs*53	ENST00000301067	NM_003482.3	77	caC/ca																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112939969	112939969	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs186919241		P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	161	658	0	ENST00000351677.2:c.1621G>A	p.Glu541Lys	p.E541K	ENST00000351677	NM_002834.3	541	Gaa/Aaa																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133236017	133236017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	147	649	1	ENST00000320574.5:c.3139G>A	p.Gly1047Arg	p.G1047R	ENST00000320574	NM_006231.2	1047	Ggg/Agg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48878077	48878082	+	inframe_deletion	In_Frame_Del	DEL	CCGCCA	CCGCCA	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	45	284	0	ENST00000267163.4:c.34_39del	p.Thr12_Ala13del	p.T12_A13del	ENST00000267163	NM_000321.2	10	gCCGCCAcc/gcc																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81422179	81422179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	109	541	1	ENST00000298171.2:c.155C>A	p.Pro52His	p.P52H	ENST00000298171	NM_000369.2	52	cCc/cAc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89351547	89351547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1228	399	1291	0	ENST00000301030.4:c.1403G>A	p.Arg468His	p.R468H	ENST00000301030	NM_001256183.1	468	cGc/cAc																																												NEWRECORD																																		
STAT5A	0	MSKCC	GRCh37	17	40456579	40456579	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	255	1103	0	ENST00000345506.4:c.1292del	p.Gly431ValfsTer5	p.G431Vfs*5	ENST00000345506	NM_003152.3	430	cGg/cg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5243963	5243963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	98	563	2	ENST00000357368.4:c.1519G>A	p.Val507Ile	p.V507I	ENST00000357368	NM_002850.3	507	Gtc/Atc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11123674	11123674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	181	706	0	ENST00000344626.4:c.2324G>A	p.Gly775Asp	p.G775D	ENST00000344626	NM_003072.3	775	gGc/gAc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11135100	11135100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	131	496	1	ENST00000344626.4:c.3067G>A	p.Glu1023Lys	p.E1023K	ENST00000344626	NM_003072.3	1023	Gag/Aag																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41744384	41744384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	180	976	1	ENST00000301178.4:c.1004G>C	p.Gly335Ala	p.G335A	ENST00000301178	NM_021913.4	335	gGc/gCc																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45860625	45860625	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	99	1107	0	ENST00000391945.4:c.1382T>G	p.Leu461Arg	p.L461R	ENST00000391945	NM_000400.3	461	cTg/cGg																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47635626	47635626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	58	674	0	ENST00000233146.2:c.298G>A	p.Val100Ile	p.V100I	ENST00000233146	NM_000251.2	100	Gtt/Att																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47637495	47637496	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	100	489	0	ENST00000233146.2:c.633dup	p.Lys212GlufsTer20	p.K212Efs*20	ENST00000233146	NM_000251.2	210	atg/atGg																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158655990	158655990	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	237	1110	0	ENST00000263640.3:c.16A>G	p.Met6Val	p.M6V	ENST00000263640	NM_001105.4	6	Atg/Gtg																																												NEWRECORD																																		
U2AF1	0	MSKCC	GRCh37	21	44514591	44514591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	101	497	0	ENST00000291552.4:c.565C>T	p.Arg189Cys	p.R189C	ENST00000291552	NM_006758.2	189	Cgt/Tgt																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41566534	41566535	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	59	764	1	ENST00000263253.7:c.4413dup	p.Asp1472Ter	p.D1472*	ENST00000263253	NM_001429.3	1471	ctt/cTtt																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138433521	138433523	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	104	448	0	ENST00000289153.2:c.1089_1091del	p.Leu364del	p.L364del	ENST00000289153	NM_006219.2	363	ctCCTg/ctg																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142232479	142232479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	111	492	0	ENST00000350721.4:c.4505T>C	p.Val1502Ala	p.V1502A	ENST00000350721	NM_001184.3	1502	gTt/gCt																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55594094	55594094	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	116	535	4	ENST00000288135.5:c.1879+1G>A		p.X627_splice	ENST00000288135	NM_000222.2	627																																													NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66213842	66213842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	176	838	0	ENST00000273854.3:c.2588G>A	p.Ser863Asn	p.S863N	ENST00000273854	NM_004439.5	863	aGt/aAt																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	236621	236621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	92	457	0	ENST00000264932.6:c.1339C>T	p.His447Tyr	p.H447Y	ENST00000264932	NM_004168.2	447	Cat/Tat																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288177	33288177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	79	450	0	ENST00000374542.5:c.1231G>T	p.Ala411Ser	p.A411S	ENST00000374542	NM_001141970.1	411	Gcc/Tcc																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138200107	138200107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	76	351	1	ENST00000237289.4:c.1525G>A	p.Ala509Thr	p.A509T	ENST00000237289	NM_001270507.1	509	Gcc/Acc																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81339535	81339535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	363	876	3	ENST00000222390.5:c.1469C>T	p.Thr490Met	p.T490M	ENST00000222390	NM_000601.4	490	aCg/aTg																																												NEWRECORD																																		
CDK6	0	MSKCC	GRCh37	7	92247489	92247489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	89	752	2	ENST00000265734.4:c.731C>T	p.Pro244Leu	p.P244L	ENST00000265734	NM_001259.6	244	cCt/cTt																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90965798	90965798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	56	555	0	ENST00000265433.3:c.1519C>T	p.His507Tyr	p.H507Y	ENST00000265433	NM_002485.4	507	Cat/Tat																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87342610	87342610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	130	582	2	ENST00000277120.3:c.895C>T	p.His299Tyr	p.H299Y	ENST00000277120		299	Cac/Tac																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39913264	39913265	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	204	953	0	ENST00000378444.4:c.4850dup	p.Leu1617PhefsTer12	p.L1617Ffs*12	ENST00000378444	NM_001123385.1	1617	tta/ttTa																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32190405	32190405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	140	685	0	ENST00000375023.3:c.334G>A	p.Glu112Lys	p.E112K	ENST00000375023	NM_004557.3	112	Gag/Aag																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0014971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	112	543	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	101	748	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	86	570	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114912134	114912135	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGG			P-0014971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	72	600	0	ENST00000543371.1:c.1205_1207dup	p.Leu402_Ala403insVal	p.L402_A403insV	ENST00000543371	NM_001198531.1	402	ctg/cTGGtg																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50468114	50468114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014971-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	108	428	0	ENST00000331340.3:c.1349G>A	p.Arg450His	p.R450H	ENST00000331340	NM_006060.4	450	cGc/cAc																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000820-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			217	298	582	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000820-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			177	67	173	0	ENST00000300305.3:c.367dupG	p.Asp123GlyfsTer15	p.D123Gfs*15	ENST00000300305		123	gat/gGat																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16254815	16254815	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000820-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			148	51	293	1	ENST00000375759.3:c.2080G>T	p.Glu694Ter	p.E694*	ENST00000375759	NM_015001.2	694	Gaa/Taa																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	58	469	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578429	7578430	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0006430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	120	463	0	ENST00000269305.4:c.499_500dup	p.Gln167HisfsTer4	p.Q167Hfs*4	ENST00000269305	NM_001126112.2	167	cag/caCAg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27087396	27087409	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGTCCTGGAGTG	TGAGTCCTGGAGTG	C			P-0006430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	190	671	0	ENST00000324856.7:c.1970_1983delinsC	p.Leu657ProfsTer81	p.L657Pfs*81	ENST00000324856	NM_006015.4	657	cTGAGTCCTGGAGTG/cC																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	36	276	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212989581	212989581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	33	358	2	ENST00000342788.4:c.130C>A	p.Gln44Lys	p.Q44K	ENST00000342788	NM_005235.2	44	Cag/Aag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023485	27023486	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	66	762	0	ENST00000324856.7:c.595dup	p.Gln199ProfsTer201	p.Q199Pfs*201	ENST00000324856	NM_006015.4	197	-/C																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38064170	38064170	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	61	655	0	ENST00000250448.2:c.8del	p.Gly3GlufsTer3	p.G3Efs*3	ENST00000250448	NM_004496.3	3	gGa/ga																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1570	156	871	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0005720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	10	58	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578467	7578468	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCGGGC			P-0005720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2070	219	1022	0	ENST00000269305.4:c.456_462dup	p.Thr155AlafsTer28	p.T155Afs*28	ENST00000269305	NM_001126112.2	154	-/GCCCGGC																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54958225	54958226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1687	200	711	0	ENST00000312783.6:c.381dup	p.Trp128ValfsTer7	p.W128Vfs*7	ENST00000312783	NM_198436.1	127	-/G																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	644	347	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	131	267	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	229	404	2	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713883	30713883	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143095746		P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	67	285	0	ENST00000359013.4:c.1283G>A	p.Arg428His	p.R428H	ENST00000359013	NM_001024847.2	428	cGt/cAt																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	394941	394941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	146	248	0	ENST00000380956.4:c.337C>T	p.Arg113Trp	p.R113W	ENST00000380956	NM_001195286.1	113	Cgg/Tgg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604797	48604797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	172	324	0	ENST00000342988.3:c.1619T>A	p.Leu540His	p.L540H	ENST00000342988	NM_005359.5	540	cTt/cAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174505	112174505	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CGTACAAC			P-0009488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	100	297	0	ENST00000257430.4:c.3214delinsCGTACAAC	p.Ser1072ArgfsTer11	p.S1072Rfs*11	ENST00000257430	NM_000038.5	1072	Agt/CGTACAACgt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	59	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577562	7577563	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGT			P-0006013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	38	375	0	ENST00000269305.4:c.716_718dup	p.Asn239dup	p.N239dup	ENST00000269305	NM_001126112.2	239	agt/aACAgt																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49431874	49431874	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	184	371	0	ENST00000301067.7:c.9265del	p.Val3089TrpfsTer30	p.V3089Wfs*30	ENST00000301067	NM_003482.3	3089	Gtg/tg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	282	425	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	276	506	2	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	280	525	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206647788	206647788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	296	461	0	ENST00000367120.3:c.202G>A	p.Val68Ile	p.V68I	ENST00000367120	NM_014002.3	68	Gtc/Atc																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	104	399	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	67	232	3	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	317	316	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	363	552	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	134	335	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	222	424	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																												NEWRECORD																																		
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	451	561	0	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg																																												NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	40	119	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	283	447	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	157	187	7	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46256424	46256424	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs6094752		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	489	788	0	ENST00000371998.3:c.652C>T	p.Arg218Cys	p.R218C	ENST00000371998		218	Cgc/Tgc																																												NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	302	488	7	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																												NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	145	444	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	193	744	4	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																												NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	373	426	6	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	371	568	3	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	413	607	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45391501	45391501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	204	332	1	ENST00000262160.6:c.659C>T	p.Thr220Met	p.T220M	ENST00000262160	NM_005901.5	220	aCg/aTg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993849	72993849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	329	599	1	ENST00000268489.5:c.196G>A	p.Ala66Thr	p.A66T	ENST00000268489	NM_006885.3	66	Gcg/Acg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	255	608	2	ENST00000575354.2:c.3347dupC	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542110	187542110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	128	393	0	ENST00000441802.2:c.5630del	p.Pro1877LeufsTer20	p.P1877Lfs*20	ENST00000441802	NM_005245.3	1877	cCt/ct																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	326	489	0	ENST00000344626.4:c.3484G>A	p.Gly1162Ser	p.G1162S	ENST00000344626	NM_003072.3	1162	Ggc/Agc																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	292	374	1	ENST00000462284.1:c.961delC	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	311	520	6	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187518306	187518306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	53	130	0	ENST00000441802.2:c.12388G>A	p.Glu4130Lys	p.E4130K	ENST00000441802	NM_005245.3	4130	Gag/Aag																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713742	30713742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	182	307	1	ENST00000359013.4:c.1142G>C	p.Arg381Pro	p.R381P	ENST00000359013	NM_001024847.2	381	cGg/cCg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32169116	32169116	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	211	454	2	ENST00000375023.3:c.3917delC	p.Pro1306GlnfsTer3	p.P1306Qfs*3	ENST00000375023	NM_004557.3	1306	cCa/ca																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81969882	81969882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1146	513	633	2	ENST00000359376.3:c.2951G>A	p.Arg984His	p.R984H	ENST00000359376	NM_002661.3	984	cGc/cAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	346	425	0	ENST00000269305.4:c.400T>C	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	Ttt/Ctt																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209652	98209652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	123	278	0	ENST00000331920.6:c.3886G>A	p.Gly1296Arg	p.G1296R	ENST00000331920	NM_000264.3	1296	Gga/Aga																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	41	422	0	ENST00000334205.4:c.2287delC	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42799131	42799131	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	224	363	0	ENST00000575354.2:c.4620delC	p.Thr1541LeufsTer79	p.T1541Lfs*79	ENST00000575354	NM_015125.3	1539	Ccc/cc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16256846	16256846	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	145	354	0	ENST00000375759.3:c.4111C>T	p.Arg1371Ter	p.R1371*	ENST00000375759	NM_015001.2	1371	Cga/Tga																																												NEWRECORD																																		
FAM46C	0	MSKCC	GRCh37	1	118166214	118166214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	266	447	2	ENST00000369448.3:c.724G>A	p.Gly242Arg	p.G242R	ENST00000369448	NM_017709.3	242	Ggg/Agg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156851394	156851394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	260	459	0	ENST00000524377.1:c.2351T>C	p.Leu784Pro	p.L784P	ENST00000524377	NM_002529.3	784	cTg/cCg																																												NEWRECORD																																		
HIST3H3	0	MSKCC	GRCh37	1	228612869	228612869	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201904037		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	391	797	1	ENST00000366696.1:c.158G>A	p.Arg53His	p.R53H	ENST00000366696	NM_003493.2	53	cGc/cAc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47098598	47098598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	315	456	1	ENST00000409792.3:c.6676G>T	p.Val2226Leu	p.V2226L	ENST00000409792	NM_014159.6	2226	Gtg/Ttg																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143045875	143045875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	246	494	0	ENST00000262992.4:c.1759C>A	p.Leu587Met	p.L587M	ENST00000262992	NM_001101669.1	587	Ctg/Atg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177540	112177540	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	122	271	0	ENST00000257430.4:c.6249A>G	p.Ile2083Met	p.I2083M	ENST00000257430	NM_000038.5	2083	atA/atG																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149504392	149504392	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	125	387	0	ENST00000261799.4:c.1810C>T	p.Arg604Cys	p.R604C	ENST00000261799	NM_002609.3	604	Cgc/Tgc																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176522591	176522591	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139461102		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	307	532	0	ENST00000292408.4:c.1688G>A	p.Arg563Gln	p.R563Q	ENST00000292408	NM_213647.1	563	cGg/cAg																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176522695	176522695	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	321	462	1	ENST00000292408.4:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000292408	NM_213647.1	598	Cga/Tga																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176523068	176523068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	84	335	0	ENST00000292408.4:c.1832G>A	p.Arg611Gln	p.R611Q	ENST00000292408	NM_213647.1	611	cGg/cAg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32163737	32163737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	210	367	0	ENST00000375023.3:c.5489A>G	p.Lys1830Arg	p.K1830R	ENST00000375023	NM_004557.3	1830	aAa/aGa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117632201	117632201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	241	438	1	ENST00000368508.3:c.6215G>A	p.Arg2072Gln	p.R2072Q	ENST00000368508	NM_002944.2	2072	cGg/cAg																																												NEWRECORD																																		
RAC1	0	MSKCC	GRCh37	7	6441974	6441974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	263	346	0	ENST00000356142.4:c.533C>T	p.Ala178Val	p.A178V	ENST00000356142	NM_018890.3	178	gCg/gTg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139399128	139399128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	280	420	0	ENST00000277541.6:c.5015G>A	p.Arg1672His	p.R1672H	ENST00000277541	NM_017617.3	1672	cGc/cAc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412350	139412350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200562991		P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	235	400	0	ENST00000277541.6:c.1295C>T	p.Thr432Met	p.T432M	ENST00000277541	NM_017617.3	432	aCg/aTg																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77066883	77066883	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	145	333	0	ENST00000356341.3:c.602A>G	p.Tyr201Cys	p.Y201C	ENST00000356341	NM_002576.4	201	tAc/tGc																																												NEWRECORD																																		
EED	0	MSKCC	GRCh37	11	85956323	85956323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	148	316	0	ENST00000263360.6:c.52G>A	p.Ala18Thr	p.A18T	ENST00000263360	NM_003797.3	18	Gcc/Acc																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1025831	1025831	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	314	487	0	ENST00000358495.3:c.699A>G	p.Ile233Met	p.I233M	ENST00000358495	NM_134424.2	233	atA/atG																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49424724	49424724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	396	526	0	ENST00000301067.7:c.13623G>T	p.Lys4541Asn	p.K4541N	ENST00000301067	NM_003482.3	4541	aaG/aaT																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431543	49431543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	254	453	0	ENST00000301067.7:c.9596G>A	p.Ser3199Asn	p.S3199N	ENST00000301067	NM_003482.3	3199	aGc/aAc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49442932	49442932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	265	409	1	ENST00000301067.7:c.3976C>T	p.Arg1326Trp	p.R1326W	ENST00000301067	NM_003482.3	1326	Cgg/Tgg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112400	115112400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	182	311	0	ENST00000257566.3:c.1340G>A	p.Arg447His	p.R447H	ENST00000257566	NM_016569.3	447	cGc/cAc																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435345	110435345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	188	237	0	ENST00000375856.3:c.3056C>T	p.Pro1019Leu	p.P1019L	ENST00000375856	NM_003749.2	1019	cCg/cTg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42019539	42019539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	534	663	0	ENST00000219905.7:c.3592G>A	p.Val1198Met	p.V1198M	ENST00000219905	NM_001164273.1	1198	Gtg/Atg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3779279	3779279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	212	418	2	ENST00000262367.5:c.5769C>A	p.Ser1923Arg	p.S1923R	ENST00000262367	NM_004380.2	1923	agC/agA																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3788618	3788618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	336	471	0	ENST00000262367.5:c.4336C>A	p.Arg1446Ser	p.R1446S	ENST00000262367	NM_004380.2	1446	Cgc/Agc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72923711	72923711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	356	744	3	ENST00000268489.5:c.3367C>T	p.Arg1123Trp	p.R1123W	ENST00000268489	NM_006885.3	1123	Cgg/Tgg																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7982776	7982776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	79	523	0	ENST00000319144.4:c.1009T>C	p.Cys337Arg	p.C337R	ENST00000319144	NM_001139.2	337	Tgc/Cgc																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38504636	38504636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	333	518	0	ENST00000254066.5:c.247C>T	p.Arg83Cys	p.R83C	ENST00000254066	NM_000964.3	83	Cgc/Tgc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2220218	2220218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	51	426	2	ENST00000398665.3:c.2803G>A	p.Ala935Thr	p.A935T	ENST00000398665	NM_032482.2	935	Gca/Aca																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11170801	11170801	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	25	353	0	ENST00000344626.4:c.4849A>G	p.Ser1617Gly	p.S1617G	ENST00000344626	NM_003072.3	1617	Agc/Ggc																																												NEWRECORD																																		
ZRSR2	0	MSKCC	GRCh37	X	15838419	15838419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	144	579	0	ENST00000307771.7:c.917G>A	p.Arg306Gln	p.R306Q	ENST00000307771	NM_005089.3	306	cGg/cAg																																												NEWRECORD																																		
EIF1AX	0	MSKCC	GRCh37	X	20159746	20159746	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	39	511	0	ENST00000379607.5:c.13A>G	p.Lys5Glu	p.K5E	ENST00000379607	NM_001412.3	5	Aaa/Gaa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44923001	44923001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	163	590	1	ENST00000377967.4:c.1862G>A	p.Arg621His	p.R621H	ENST00000377967	NM_021140.2	621	cGc/cAc																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18274086	18274088	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	272	454	0	ENST00000222254.8:c.1308_1310del	p.Glu436del	p.E436del	ENST00000222254	NM_005027.3	435	aAGGag/aag																																												NEWRECORD																																		
STAT5A	0	MSKCC	GRCh37	17	40441983	40441984	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	565	838	0	ENST00000345506.4:c.228_229insT	p.Gly77TrpfsTer23	p.G77Wfs*23	ENST00000345506	NM_003152.3	76	-/T																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3817777	3817778	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	517	741	1	ENST00000262367.5:c.3193_3194delAG	p.Ser1065Ter	p.S1065*	ENST00000262367	NM_004380.2	1065	AGt/t																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65311293	65311293	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	346	480	0	ENST00000342505.4:c.2018del	p.Gly673ValfsTer30	p.G673Vfs*30	ENST00000342505	NM_002227.2	673	gGt/gt																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101867538	101867543	+	inframe_deletion	In_Frame_Del	DEL	GGCGGC	GGCGGC	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	12	26	0	ENST00000374994.4:c.73_78del	p.Ala25_Ala26del	p.A25_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCg/ctg																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138198265	138198265	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	215	306	0	ENST00000237289.4:c.861del	p.Val288PhefsTer4	p.V288Ffs*4	ENST00000237289	NM_001270507.1	286	ttA/tt																																												NEWRECORD																																		
CRKL	0	MSKCC	GRCh37	22	21288188	21288188	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	77	554	1	ENST00000354336.3:c.437delA	p.Lys146ArgfsTer5	p.K146Rfs*5	ENST00000354336	NM_005207.3	145	Aaa/aa																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41726645	41726645	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	289	547	1	ENST00000301178.4:c.195del	p.Glu66ArgfsTer32	p.E66Rfs*32	ENST00000301178	NM_021913.4	64	Ccc/cc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48951141	48951141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	391	528	0	ENST00000267163.4:c.1303G>T	p.Gly435Ter	p.G435*	ENST00000267163	NM_000321.2	435	Gga/Tga																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42005580	42005580	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	596	924	0	ENST00000219905.7:c.3316C>T	p.Arg1106Ter	p.R1106*	ENST00000219905	NM_001164273.1	1106	Cga/Tga																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2111929	2111929	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	566	641	1	ENST00000219476.3:c.1177G>T	p.Glu393Ter	p.E393*	ENST00000219476	NM_000548.3	393	Gag/Tag																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41566476	41566476	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	614	604	0	ENST00000263253.7:c.4353T>A	p.His1451Gln	p.H1451Q	ENST00000263253	NM_001429.3	1451	caT/caA																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47006849	47006849	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0006408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1519	521	765	0	ENST00000329236.7:c.-32G>A		p.*11*	ENST00000329236	NM_001204466.1																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578463	7578464	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	555	626	0	ENST00000269305.4:c.466_467insT	p.Arg156LeufsTer25	p.R156Lfs*25	ENST00000269305	NM_001126112.2	156	cgc/cTgc																																												NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32954022	32954023	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1305653361		P-0011185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	156	407	7	ENST00000380152.3:c.9097dup	p.Thr3033AsnfsTer11	p.T3033Nfs*11	ENST00000380152		3030	aca/acAa																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47705517	47705517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	250	472	0	ENST00000233146.2:c.2317A>G	p.Lys773Glu	p.K773E	ENST00000233146	NM_000251.2	773	Aag/Gag																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198273096	198273096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	368	457	0	ENST00000335508.6:c.1114C>T	p.Pro372Ser	p.P372S	ENST00000335508	NM_012433.2	372	Cca/Tca																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66356427	66356427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	137	251	0	ENST00000273854.3:c.1070C>A	p.Pro357His	p.P357H	ENST00000273854	NM_004439.5	357	cCc/cAc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117674171	117674171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	224	375	0	ENST00000368508.3:c.4303G>A	p.Val1435Ile	p.V1435I	ENST00000368508	NM_002944.2	1435	Gtt/Att																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8486251	8486251	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	702	377	0	ENST00000356435.5:c.2566T>G	p.Tyr856Asp	p.Y856D	ENST00000356435		856	Tac/Gac																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139404350	139404350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	538	451	0	ENST00000277541.6:c.2804C>T	p.Pro935Leu	p.P935L	ENST00000277541	NM_017617.3	935	cCc/cTc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717678	89717685	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGACAA	GAAGACAA	-			P-0011185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	77	375	0	ENST00000371953.3:c.704_711del	p.Glu235ValfsTer5	p.E235Vfs*5	ENST00000371953	NM_000314.4	235	GAAGACAAg/g																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	573	453	1	ENST00000269305.4:c.797del	p.Gly266AspfsTer79	p.G266Dfs*79	ENST00000269305	NM_001126112.2	266	gGa/ga																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49443908	49443908	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	510	412	2	ENST00000301067.7:c.3463del	p.Leu1155TrpfsTer9	p.L1155Wfs*9	ENST00000301067	NM_003482.3	1155	Ctg/tg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101048	27101048	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	75	1014	1	ENST00000324856.7:c.4330G>T	p.Glu1444Ter	p.E1444*	ENST00000324856	NM_006015.4	1444	Gag/Tag																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52438603	52438603	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0011076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	41	396	0	ENST00000460680.1:c.1117-1G>A		p.X373_splice	ENST00000460680	NM_004656.3	373																																													NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71096153	71096153	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	55	357	0	ENST00000318789.4:c.604C>T	p.Gln202Ter	p.Q202*	ENST00000318789	NM_032682.5	202	Caa/Taa																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120505	70120506	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACAC			P-0011076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	49	573	0	ENST00000245479.2:c.1511_1514dup	p.Gln505HisfsTer74	p.Q505Hfs*74	ENST00000245479	NM_000346.3	503	tac/tACACac																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	849	563	1	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	906	592	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435219	110435219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	487	269	0	ENST00000375856.3:c.3182C>T	p.Ser1061Leu	p.S1061L	ENST00000375856	NM_003749.2	1061	tCg/tTg																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89857932	89857932	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201385829		P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	180	443	0	ENST00000389301.3:c.1238G>A	p.Arg413His	p.R413H	ENST00000389301	NM_000135.2	413	cGt/cAt																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7984475	7984475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	153	605	0	ENST00000319144.4:c.383T>C	p.Val128Ala	p.V128A	ENST00000319144	NM_001139.2	128	gTc/gCc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70361146	70361146	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	324	564	1	ENST00000374080.3:c.6334C>T	p.Gln2112Ter	p.Q2112*	ENST00000374080		2112	Caa/Taa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576926	7576927	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	C			P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	240	475	0	ENST00000269305.4:c.920-1dup	p.Ala307GlyfsTer30	p.A307Gfs*30	ENST00000269305	NM_001126112.2	307	gca/gGca																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577588	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGGTAC	GGTGGTAC	-			P-0006402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	172	485	0	ENST00000269305.4:c.686_693del	p.Cys229TyrfsTer8	p.C229Yfs*8	ENST00000269305	NM_001126112.2	229	tGTACCACC/t																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	102	266	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023060	27023060	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			58	15	34	0	ENST00000324856.7:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000324856	NM_006015.4	56	Cag/Tag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105841	27105841	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	88	222	0	ENST00000324856.7:c.5452C>T	p.Gln1818Ter	p.Q1818*	ENST00000324856	NM_006015.4	1818	Cag/Tag																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55141084	55141084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	101	243	1	ENST00000257290.5:c.1730C>T	p.Pro577Leu	p.P577L	ENST00000257290	NM_006206.4	577	cCg/cTg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151835904	151835904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			772	51	246	0	ENST00000262189.6:c.14620C>T	p.Arg4874Trp	p.R4874W	ENST00000262189	NM_170606.2	4874	Cgg/Tgg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692848	89692848	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	33	68	0	ENST00000371953.3:c.332G>A	p.Trp111Ter	p.W111*	ENST00000371953	NM_000314.4	111	tGg/tAg																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209104637	209104638	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			773	124	324	0	ENST00000345146.2:c.940dup	p.Arg314ProfsTer34	p.R314Pfs*34	ENST00000345146	NM_005896.2	314	cgt/cCgt																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591077	67591090	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAAATTGACAAA	GAGAAATTGACAAA	-			P-0001286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	20	115	0	ENST00000274335.5:c.1670_1683del	p.Arg557ProfsTer6	p.R557Pfs*6	ENST00000274335		557	cGAGAAATTGACAAA/c																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692984	89692985	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	91	175	0	ENST00000371953.3:c.468_469insT	p.Glu157Ter	p.E157*	ENST00000371953	NM_000314.4	156	-/T																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	39	178	1				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	42	403	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202151186	202151186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	43	433	0	ENST00000358485.4:c.1486G>A	p.Asp496Asn	p.D496N	ENST00000358485	NM_001080125.1	496	Gat/Aat																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52637549	52637549	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	49	436	0	ENST00000394830.3:c.2767G>T	p.Glu923Ter	p.E923*	ENST00000394830	NM_018313.4	923	Gaa/Taa																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52662953	52662953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	52	547	1	ENST00000394830.3:c.1400C>T	p.Ser467Leu	p.S467L	ENST00000394830	NM_018313.4	467	tCa/tTa																																												NEWRECORD																																		
PIM1	0	MSKCC	GRCh37	6	37138781	37138781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	117	439	0	ENST00000373509.5:c.214G>A	p.Asp72Asn	p.D72N	ENST00000373509	NM_002648.3	72	Gac/Aac																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344035	118344035	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	56	374	0	ENST00000534358.1:c.2161C>T	p.Arg721Ter	p.R721*	ENST00000534358	NM_005933.3	721	Cga/Tga																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56492623	56492623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	128	507	1	ENST00000267101.3:c.2773G>A	p.Glu925Lys	p.E925K	ENST00000267101	NM_001982.3	925	Gag/Aag																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89347105	89347105	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	44	589	0	ENST00000301030.4:c.5845G>C	p.Glu1949Gln	p.E1949Q	ENST00000301030	NM_001256183.1	1949	Gag/Cag																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123179027	123179027	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	106	568	0	ENST00000218089.9:c.476A>G	p.Tyr159Cys	p.Y159C	ENST00000218089	NM_001042749.1	159	tAt/tGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578545	7578546	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0005365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	37	381	0	ENST00000269305.4:c.384_385insCC	p.Ala129ProfsTer42	p.A129Pfs*42	ENST00000269305	NM_001126112.2	128	-/CC																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30032786	30032787	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0005365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	89	508	0	ENST00000338641.4:c.161_162delTG	p.Leu54ArgfsTer31	p.L54Rfs*31	ENST00000338641	NM_000268.3	54	cTG/c																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711927	89711928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003052-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	72	416	1	ENST00000371953.3:c.548dup	p.Asn184GlufsTer6	p.N184Efs*6	ENST00000371953	NM_000314.4	182	tta/ttAa																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003052-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	64	358	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0010080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	47	124	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																												NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	212	595	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																												NEWRECORD																																		
MALT1	0	MSKCC	GRCh37	18	56409166	56409166	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201811923		P-0010080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	234	739	0	ENST00000348428.3:c.1673G>A	p.Arg558Lys	p.R558K	ENST00000348428	NM_006785.3	558	aGa/aAa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624267	89624270	+	frameshift_variant	Frame_Shift_Del	DEL	GGAG	GGAG	-			P-0010080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	59	220	0	ENST00000371953.3:c.41_44del	p.Arg14AsnfsTer9	p.R14Nfs*9	ENST00000371953	NM_000314.4	14	aGGAGa/aa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011484-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	57	366	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175192	112175193	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0011484-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	21	158	0	ENST00000257430.4:c.3904dup	p.Leu1302ProfsTer13	p.L1302Pfs*13	ENST00000257430	NM_000038.5	1301	acc/aCcc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	651	427	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10032181	10032181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	186	365	0	ENST00000330684.3:c.642G>T	p.Lys214Asn	p.K214N	ENST00000330684	NM_001134407.1	214	aaG/aaT																																												NEWRECORD																																		
CENPA	0	MSKCC	GRCh37	2	27015026	27015026	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	470	457	0	ENST00000335756.4:c.128G>T	p.Arg43Leu	p.R43L	ENST00000335756	NM_001809.3	43	cGg/cTg																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128202786	128202786	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	544	375	1	ENST00000341105.2:c.934G>T	p.Gly312Cys	p.G312C	ENST00000341105	NM_032638.4	312	Ggc/Tgc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55980328	55980328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	163	434	1	ENST00000263923.4:c.763G>T	p.Gly255Trp	p.G255W	ENST00000263923	NM_002253.2	255	Ggg/Tgg																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118379870	118379870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	388	352	0	ENST00000534358.1:c.10855G>A	p.Glu3619Lys	p.E3619K	ENST00000534358	NM_005933.3	3619	Gaa/Aaa																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766249	66766249	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	78	257	0	ENST00000374690.3:c.1261G>T	p.Gly421Ter	p.G421*	ENST00000374690	NM_000044.3	421	Gga/Tga																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1219380	1219381	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	289	365	0	ENST00000326873.7:c.432_433insT	p.Glu145Ter	p.E145*	ENST00000326873	NM_000455.4	144	-/T																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602687	10602691	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGC	GCAGC	-			P-0011331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	344	385	2	ENST00000171111.5:c.887_891del	p.Arg296GlnfsTer52	p.R296Qfs*52	ENST00000171111	NM_203500.1	296	cGCTGC/c																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212295684	212295684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	113	480	0	ENST00000342788.4:c.2629G>T	p.Ala877Ser	p.A877S	ENST00000342788	NM_005235.2	877	Gct/Tct																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876425	35876425	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	68	437	0	ENST00000303115.3:c.1217T>G	p.Leu406Arg	p.L406R	ENST00000303115	NM_002185.3	406	cTt/cGt																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116340112	116340112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	122	396	0	ENST00000397752.3:c.974C>A	p.Pro325His	p.P325H	ENST00000397752	NM_000245.2	325	cCt/cAt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118376011	118376011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	147	645	1	ENST00000534358.1:c.9404C>T	p.Thr3135Ile	p.T3135I	ENST00000534358	NM_005933.3	3135	aCc/aTc																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12037492	12037492	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	118	385	0	ENST00000396373.4:c.1123G>T	p.Gly375Ter	p.G375*	ENST00000396373	NM_001987.4	375	Gga/Tga																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	608	492	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28623545	28623545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	84	426	1	ENST00000241453.7:c.1012C>A	p.Gln338Lys	p.Q338K	ENST00000241453	NM_004119.2	338	Caa/Aaa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28979946	28979946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	158	608	2	ENST00000282397.4:c.1522C>T	p.Arg508Cys	p.R508C	ENST00000282397	NM_002019.4	508	Cgc/Tgc																																												NEWRECORD																																		
RAD51B	0	MSKCC	GRCh37	14	68352598	68352598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	197	534	0	ENST00000487270.1:c.465A>G	p.Ile155Met	p.I155M	ENST00000487270	NM_133509.3	155	atA/atG																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67645955	67645955	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	67	484	0	ENST00000264010.4:c.883A>C	p.Lys295Gln	p.K295Q	ENST00000264010	NM_006565.3	295	Aag/Cag																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993600	72993600	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	120	629	0	ENST00000268489.5:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000268489	NM_006885.3	149	Cag/Tag																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9561237	9561237	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148001479		P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	96	507	0	ENST00000353224.5:c.545A>G	p.Tyr182Cys	p.Y182C	ENST00000353224	NM_177990.2	182	tAt/tGt																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31376659	31376659	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	76	428	0	ENST00000328111.2:c.655-1G>T		p.X219_splice	ENST00000328111	NM_006892.3	219																																													NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162740174	162740174	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	305	555	1	ENST00000367921.3:c.1377del	p.Ser460HisfsTer28	p.S460Hfs*28	ENST00000367921	NM_006182.2	459	tCc/tc																																												NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39937163	39937164	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	117	616	0	ENST00000378444.4:c.19dup	p.Leu7ProfsTer29	p.L7Pfs*29	ENST00000378444	NM_001123385.1	7	ctg/cCtg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	267	423	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	66	340	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0008862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	203	389	1	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224																																													NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97933424	97933424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0008862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	61	301	0	ENST00000289081.3:c.458T>A	p.Met153Lys	p.M153K	ENST00000289081	NM_000136.2	153	aTg/aAg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48603040	48603064	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCAGCAGGCGGCTACTGCACAA	GCAGCAGCAGGCGGCTACTGCACAA	-			P-0008862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	155	226	0	ENST00000342988.3:c.1343_1367del	p.Gln448LeufsTer20	p.Q448Lfs*20	ENST00000342988	NM_005359.5	447	atGCAGCAGCAGGCGGCTACTGCACAA/at																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106712	27106713	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAATGCCGTCCTTTCCCCG			P-0008862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	151	283	2	ENST00000324856.7:c.6326_6344dup	p.Arg2116CysfsTer40	p.R2116Cfs*40	ENST00000324856	NM_006015.4	2108	ccc/ccCAATGCCGTCCTTTCCCCGc																																												NEWRECORD																																		
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	291	482	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25463208	25463208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	161	493	0	ENST00000264709.3:c.2285G>A	p.Gly762Asp	p.G762D	ENST00000264709	NM_175629.2	762	gGc/gAc																																												NEWRECORD																																		
PHOX2B	0	MSKCC	GRCh37	4	41747918	41747918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	90	416	0	ENST00000226382.2:c.851C>A	p.Pro284Gln	p.P284Q	ENST00000226382	NM_003924.3	284	cCg/cAg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187540322	187540322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	96	503	0	ENST00000441802.2:c.7418G>A	p.Arg2473Lys	p.R2473K	ENST00000441802	NM_005245.3	2473	aGa/aAa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151879016	151879016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	257	489	0	ENST00000262189.6:c.5929C>A	p.Gln1977Lys	p.Q1977K	ENST00000262189	NM_170606.2	1977	Caa/Aaa																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135798735	135798735	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	166	364	0	ENST00000298552.3:c.508G>T	p.Gly170Cys	p.G170C	ENST00000298552	NM_001162426.1	170	Ggc/Tgc																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95590765	95590765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	69	524	0	ENST00000343455.3:c.1144G>A	p.Glu382Lys	p.E382K	ENST00000343455	NM_177438.2	382	Gaa/Aaa																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10247836	10247836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	267	656	0	ENST00000340748.4:c.4366C>T	p.Arg1456Trp	p.R1456W	ENST00000340748		1456	Cgg/Tgg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15272230	15272230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	152	290	0	ENST00000263388.2:c.6209C>T	p.Ala2070Val	p.A2070V	ENST00000263388	NM_000435.2	2070	gCg/gTg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151878994	151878995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	240	490	0	ENST00000262189.6:c.5950dup	p.Leu1984ProfsTer22	p.L1984Pfs*22	ENST00000262189	NM_170606.2	1984	cta/cCta																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542238	187542244	+	frameshift_variant	Frame_Shift_Del	DEL	ACTTAGT	ACTTAGT	-			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	117	587	0	ENST00000441802.2:c.5496_5502del	p.Leu1833TrpfsTer31	p.L1833Wfs*31	ENST00000441802	NM_005245.3	1832	gtACTAAGT/gt																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120506374	120506378	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAA	GGCAA	-			P-0004892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	235	517	0	ENST00000256646.2:c.1734_1738del	p.Cys579ProfsTer9	p.C579Pfs*9	ENST00000256646	NM_024408.3	578	ccTTGCCac/ccac																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	87	165	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52610608	52610609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	165	358	0	ENST00000394830.3:c.3564dup	p.Glu1189ArgfsTer6	p.E1189Rfs*6	ENST00000394830	NM_018313.4	1188	-/A																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	288	318	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123195116	123195117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	334	210	1	ENST00000218089.9:c.1459_1460insC	p.Cys487SerfsTer4	p.C487Sfs*4	ENST00000218089	NM_001042749.1	487	tgt/tCgt																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52440347	52440356	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCACCACT	GGGCACCACT	-			P-0003403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	226	299	0	ENST00000460680.1:c.696_705del	p.Val233ThrfsTer13	p.V233Tfs*13	ENST00000460680	NM_004656.3	232	gcAGTGGTGCCC/gc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	543	739	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57858476	57858476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199685332		P-0004341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	210	864	0	ENST00000228682.2:c.214C>T	p.Arg72Trp	p.R72W	ENST00000228682	NM_005269.2	72	Cgg/Tgg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720857	89720857	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			46	60	119	0	ENST00000371953.3:c.1008del	p.Ser338LeufsTer6	p.S338Lfs*6	ENST00000371953	NM_000314.4	336	taC/ta																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66782067	66782068	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	60	384	0	ENST00000307102.5:c.1038dup	p.Ala347ArgfsTer19	p.A347Rfs*19	ENST00000307102	NM_002755.3	345	aac/aaCc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	209	479	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	219	355	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	219	355	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101900209	101900209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	126	655	1	ENST00000374994.4:c.643C>T	p.Arg215Ter	p.R215*	ENST00000374994	NM_004612.2	215	Cga/Tga																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101891277	101891277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	108	604	0	ENST00000374994.4:c.238C>T	p.Arg80Ter	p.R80*	ENST00000374994	NM_004612.2	80	Cga/Tga																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	459813	459813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	289	553	0	ENST00000399788.2:c.1282C>T	p.Arg428Trp	p.R428W	ENST00000399788	NM_001042603.1	428	Cgg/Tgg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48581173	48581173	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	266	464	1	ENST00000342988.3:c.477G>T	p.Lys159Asn	p.K159N	ENST00000342988	NM_005359.5	159	aaG/aaT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579718	7579718	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	223	562	0	ENST00000269305.4:c.78delT	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	26	ctT/ct																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	258	416	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187541726	187541726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	186	527	0	ENST00000441802.2:c.6014G>A	p.Gly2005Glu	p.G2005E	ENST00000441802	NM_005245.3	2005	gGg/gAg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916929	178916937	+	inframe_deletion	In_Frame_Del	DEL	GGCAACCGT	GGCAACCGT	-			P-0007700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	627	801	0	ENST00000263967.3:c.317_325delGCAACCGTG	p.Gly106_Arg108del	p.G106_R108del	ENST00000263967	NM_006218.2	106	GGCAACCGT/-																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16202995	16202995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200777699		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	37	339	0	ENST00000375759.3:c.703C>T	p.Arg235Trp	p.R235W	ENST00000375759	NM_015001.2	235	Cgg/Tgg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16259043	16259043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	37	405	2	ENST00000375759.3:c.6308G>T	p.Arg2103Met	p.R2103M	ENST00000375759	NM_015001.2	2103	aGg/aTg																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162746102	162746102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	80	454	0	ENST00000367921.3:c.2225G>A	p.Arg742Gln	p.R742Q	ENST00000367921	NM_006182.2	742	cGg/cAg																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61149071	61149071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	80	597	4	ENST00000295025.8:c.1261C>T	p.Arg421Cys	p.R421C	ENST00000295025	NM_002908.2	421	Cgc/Tgc																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225368428	225368428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	38	560	0	ENST00000264414.4:c.1318C>T	p.Leu440Phe	p.L440F	ENST00000264414	NM_003590.4	440	Ctt/Ttt																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47098909	47098909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	56	485	1	ENST00000409792.3:c.6365G>A	p.Arg2122Gln	p.R2122Q	ENST00000409792	NM_014159.6	2122	cGg/cAg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52595840	52595840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	67	610	0	ENST00000394830.3:c.4075C>T	p.Arg1359Cys	p.R1359C	ENST00000394830	NM_018313.4	1359	Cgc/Tgc																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	54	403	0	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72866457	72866457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	96	547	0	ENST00000325599.8:c.806G>A	p.Arg269His	p.R269H	ENST00000325599	NM_018130.2	269	cGt/cAt																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259603	89259603	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	15	241	0	ENST00000336596.2:c.747A>C	p.Glu249Asp	p.E249D	ENST00000336596	NM_005233.5	249	gaA/gaC																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	79	445	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612061	189612061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	44	378	0	ENST00000264731.3:c.1813C>T	p.Arg605Trp	p.R605W	ENST00000264731	NM_003722.4	605	Cgg/Tgg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66356208	66356208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	21	470	0	ENST00000273854.3:c.1289A>G	p.Asp430Gly	p.D430G	ENST00000273854	NM_004439.5	430	gAt/gGt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187517730	187517730	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	15	189	0	ENST00000441802.2:c.12964T>C	p.Ser4322Pro	p.S4322P	ENST00000441802	NM_005245.3	4322	Tcc/Ccc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187628026	187628026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	81	573	0	ENST00000441802.2:c.2956G>A	p.Val986Ile	p.V986I	ENST00000441802	NM_005245.3	986	Gtc/Atc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	60	400	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	65	535	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150004721	150004721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	47	480	1	ENST00000253339.5:c.1504C>T	p.Arg502Cys	p.R502C	ENST00000253339		502	Cgt/Tgt																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2946355	2946355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	35	521	0	ENST00000396946.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000396946	NM_032415.4	1128	Gta/Ata																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2962804	2962804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	18	401	2	ENST00000396946.4:c.2104G>A	p.Glu702Lys	p.E702K	ENST00000396946	NM_032415.4	702	Gag/Aag																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508461	106508461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	11	130	0	ENST00000359195.3:c.455G>A	p.Arg152Gln	p.R152Q	ENST00000359195	NM_002649.2	152	cGg/cAg																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116339700	116339700	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	36	395	1	ENST00000397752.3:c.562G>A	p.Val188Ile	p.V188I	ENST00000397752	NM_000245.2	188	Gta/Ata																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852274	63852274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	57	318	0	ENST00000279873.7:c.3052G>A	p.Asp1018Asn	p.D1018N	ENST00000279873	NM_032199.2	1018	Gat/Aat																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70446278	70446278	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147119124		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	79	682	0	ENST00000373644.4:c.5218C>T	p.Arg1740Cys	p.R1740C	ENST00000373644	NM_030625.2	1740	Cgc/Tgc																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64137761	64137761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	38	504	1	ENST00000334205.4:c.1862C>T	p.Ala621Val	p.A621V	ENST00000334205	NM_003942.2	621	gCg/gTg																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77103408	77103408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	51	702	0	ENST00000356341.3:c.158G>A	p.Arg53Gln	p.R53Q	ENST00000356341	NM_002576.4	53	cGa/cAa																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100933406	100933406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150584881		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	93	726	1	ENST00000325455.5:c.1984G>A	p.Val662Ile	p.V662I	ENST00000325455	NM_001202474.3	662	Gtt/Att																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	96	451	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46205332	46205332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	82	356	0	ENST00000334344.6:c.416C>T	p.Ser139Leu	p.S139L	ENST00000334344	NM_152641.2	139	tCg/tTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420745	49420745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	33	336	2	ENST00000301067.7:c.15004C>T	p.Arg5002Trp	p.R5002W	ENST00000301067	NM_003482.3	5002	Cgg/Tgg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49435048	49435048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	16	260	0	ENST00000301067.7:c.6505G>A	p.Ala2169Thr	p.A2169T	ENST00000301067	NM_003482.3	2169	Gcc/Acc																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56864528	56864528	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	93	874	0	ENST00000308159.5:c.1016A>G	p.Asn339Ser	p.N339S	ENST00000308159	NM_014669.4	339	aAt/aGt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29509685	29509685	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	30	333	0	ENST00000358273.4:c.888+2T>C		p.X296_splice	ENST00000358273	NM_001042492.2	296																																													NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10250953	10250953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	31	316	0	ENST00000340748.4:c.3527C>T	p.Ala1176Val	p.A1176V	ENST00000340748		1176	gCg/gTg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11098396	11098396	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138097741		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	38	385	0	ENST00000344626.4:c.914C>T	p.Pro305Leu	p.P305L	ENST00000344626	NM_003072.3	305	cCg/cTg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11098423	11098423	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	25	272	0	ENST00000344626.4:c.941C>T	p.Ala314Val	p.A314V	ENST00000344626	NM_003072.3	314	gCg/gTg																																												NEWRECORD																																		
DNAJB1	0	MSKCC	GRCh37	19	14626844	14626844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	121	829	1	ENST00000254322.2:c.931C>T	p.Arg311Cys	p.R311C	ENST00000254322	NM_006145.1	311	Cgt/Tgt																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31395665	31395665	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	30	480	0	ENST00000328111.2:c.2518C>T	p.Arg840Ter	p.R840*	ENST00000328111	NM_006892.3	840	Cga/Tga																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44970645	44970645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	31	322	0	ENST00000377967.4:c.4195G>A	p.Ala1399Thr	p.A1399T	ENST00000377967	NM_021140.2	1399	Gcc/Acc																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	123	402	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																												NEWRECORD																																		
NCOA3	8202	MSKCC	GRCh37	20	46264985	46264985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	72	904	0	ENST00000371998.3:c.1860del	p.Lys620AsnfsTer18	p.K620Nfs*18	ENST00000371998		619	Aaa/aa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101401	27101402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	37	466	0	ENST00000324856.7:c.4689dup	p.Met1564HisfsTer8	p.M1564Hfs*8	ENST00000324856	NM_006015.4	1561	-/C																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177716	112177717	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	43	325	0	ENST00000257430.4:c.6430_6431del	p.Leu2144GlyfsTer9	p.L2144Gfs*9	ENST00000257430	NM_000038.5	2142	aTC/a																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114903755	114903755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	78	785	1	ENST00000543371.1:c.763del	p.His255IlefsTer3	p.H255Ifs*3	ENST00000543371	NM_001198531.1	253	atC/at																																												NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	57	609	4	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47702382	47702382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	53	386	0	ENST00000233146.2:c.1978del	p.Asp660IlefsTer25	p.D660Ifs*25	ENST00000233146	NM_000251.2	660	Gat/at																																												NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	39	470	2	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																													NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2154251	2154251	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	39	534	0	ENST00000434045.2:c.677del	p.Gly226AlafsTer30	p.G226Afs*30	ENST00000434045	NM_001127598.1	226	gGc/gc																																												NEWRECORD																																		
CD274	0	MSKCC	GRCh37	9	5466787	5466787	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	69	540	0	ENST00000381577.3:c.813del	p.Lys271AsnfsTer44	p.K271Nfs*44	ENST00000381577	NM_014143.3	270	Aaa/aa																																												NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215646084	215646085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs746325928		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	55	435	0	ENST00000260947.4:c.513dup	p.Asp172ArgfsTer10	p.D172Rfs*10	ENST00000260947	NM_000465.2	171	-/A																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	71	712	6	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23646981	23646981	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs587776408		P-0008317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	50	531	2	ENST00000261584.4:c.886del	p.Met296Ter	p.M296*	ENST00000261584	NM_024675.3	296	Atg/tg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577105	7577106	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACAGGCAC			P-0014255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	49	854	0	ENST00000269305.4:c.824_832dup	p.Cys277_Pro278insArgAlaCys	p.C277_P278insRAC	ENST00000269305	NM_001126112.2	278	cct/cGTGCCTGTCct																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11130372	11130372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014255-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	32	695	1	ENST00000344626.4:c.2611G>A	p.Ala871Thr	p.A871T	ENST00000344626	NM_003072.3	871	Gcc/Acc																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156837904	156837904	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			147	134	364	1	ENST00000524377.1:c.437C>A	p.Ser146Ter	p.S146*	ENST00000524377	NM_002529.3	146	tCg/tAg																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162746110	162746110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	128	289	2	ENST00000367921.3:c.2233G>T	p.Gly745Cys	p.G745C	ENST00000367921	NM_006182.2	745	Ggc/Tgc																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35871274	35871274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	38	371	0	ENST00000303115.3:c.496G>T	p.Asp166Tyr	p.D166Y	ENST00000303115	NM_002185.3	166	Gat/Tat																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32191699	32191699	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	205	398	0	ENST00000375023.3:c.7C>G	p.Pro3Ala	p.P3A	ENST00000375023	NM_004557.3	3	Ccc/Gcc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	129	419	1	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32																																													NEWRECORD																																		
RAD51D	0	MSKCC	GRCh37	17	33446586	33446586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	134	579	0	ENST00000335858.7:c.47T>C	p.Met16Thr	p.M16T	ENST00000335858	NM_133629.2	16	aTg/aCg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78899194	78899194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	30	251	0	ENST00000306801.3:c.2833G>T	p.Ala945Ser	p.A945S	ENST00000306801	NM_020761.2	945	Gct/Tct																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			42	100	196	0	ENST00000326873.7:c.921-1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307																																													NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602773	10602773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			40	184	382	0	ENST00000171111.5:c.805C>T	p.Arg269Trp	p.R269W	ENST00000171111	NM_203500.1	269	Cgg/Tgg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173628	112173628	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			47	107	328	0	ENST00000257430.4:c.2338del	p.Ser780ValfsTer40	p.S780Vfs*40	ENST00000257430	NM_000038.5	779	ttA/tt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974795	21974796	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTC			P-0001348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	52	148	0	ENST00000304494.5:c.28_31dup	p.Pro11ArgfsTer5	p.P11Rfs*5	ENST00000304494	NM_000077.4	11	cct/cGAGCct																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974795	21974796	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTC			P-0001348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	52	148	0	ENST00000304494.5:c.28_31dup	p.Pro11ArgfsTer5	p.P11Rfs*5	ENST00000304494	NM_000077.4	11	cct/cGAGCct																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577061	7577084	+	inframe_deletion	In_Frame_Del	DEL	CTTTCTTGCGGAGATTCTCTTCCT	CTTTCTTGCGGAGATTCTCTTCCT	-			P-0001348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	64	451	0	ENST00000269305.4:c.854_877del	p.Glu285_Lys292del	p.E285_K292del	ENST00000269305	NM_001126112.2	285	gAGGAAGAGAATCTCCGCAAGAAAGgg/ggg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151884488	151884488	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	180	244	0	ENST00000262189.6:c.4867G>T	p.Glu1623Ter	p.E1623*	ENST00000262189	NM_170606.2	1623	Gaa/Taa																																												NEWRECORD																																		
GREM1	0	MSKCC	GRCh37	15	33022962	33022962	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	104	382	0	ENST00000300177.4:c.71G>C	p.Gly24Ala	p.G24A	ENST00000300177	NM_001191322.1	24	gGg/gCg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115939	8115940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	49	168	0	ENST00000346208.3:c.1287dup	p.Phe430LeufsTer77	p.F430Lfs*77	ENST00000346208		429	tcc/tCcc																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	335	412	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	342	707	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	250	405	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49724798	49724798	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G	rs138710044		P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	14	101	0	ENST00000449682.2:c.469A>C	p.Lys157Gln	p.K157Q	ENST00000449682	NM_020998.3	157	Aag/Cag																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46531765	46531765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	180	695	0	ENST00000262741.5:c.582G>T	p.Glu194Asp	p.E194D	ENST00000262741	NM_003629.3	194	gaG/gaT																																												NEWRECORD																																		
HIST1H3E	0	MSKCC	GRCh37	6	26225561	26225561	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1360	951	1572	1	ENST00000360408.1:c.179A>T	p.Glu60Val	p.E60V	ENST00000360408	NM_003532.2	60	gAg/gTg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602484	10602485	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012897-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	358	423	0	ENST00000171111.5:c.1093dup	p.Leu365ProfsTer50	p.L365Pfs*50	ENST00000171111	NM_203500.1	365	ctg/cCtg																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14029527	14029527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000570-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	37	132	0	ENST00000311895.7:c.1738C>G	p.Leu580Val	p.L580V	ENST00000311895	NM_005236.2	580	Ctt/Gtt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000570-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			536	347	392	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120205	70120206	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCCCC			P-0000570-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	44	407	0	ENST00000245479.2:c.1208_1212dupGCCCC	p.Ser405AlafsTer67	p.S405Afs*67	ENST00000245479	NM_000346.3	403	agc/aGCCCCgc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000632-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	149	569	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	18	259	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	16	286	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																												NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			754	128	615	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			589	82	423	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52442542	52442542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	75	390	2	ENST00000460680.1:c.203A>G	p.Asp68Gly	p.D68G	ENST00000460680	NM_004656.3	68	gAt/gGt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106197505	106197506	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			673	105	566	0	ENST00000380013.4:c.5844dup	p.Val1949SerfsTer7	p.V1949Sfs*7	ENST00000380013	NM_001127208.2	1946	-/A																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	67	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100175	27100176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	42	270	0	ENST00000324856.7:c.3977dupC	p.Gln1327AlafsTer11	p.Q1327Afs*11	ENST00000324856	NM_006015.4	1324	tac/taCc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	41	250	0	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24143190	24143190	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	83	428	0	ENST00000263121.7:c.422A>G	p.His141Arg	p.H141R	ENST00000263121	NM_003073.3	141	cAc/cGc																																												NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	82	483	3	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	108	667	4	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	102	463	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59760967	59760967	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	112	602	4	ENST00000259008.2:c.3440delA	p.Asn1147MetfsTer3	p.N1147Mfs*3	ENST00000259008	NM_032043.2	1147	aAt/at																																												NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	54	437	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68856093	68856093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	108	512	0	ENST00000261769.5:c.1901C>T	p.Ala634Val	p.A634V	ENST00000261769	NM_004360.3	634	gCg/gTg																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	145	730	0	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	106	764	2	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	78	368	0	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94120326	94120326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	116	693	0	ENST00000369303.4:c.725C>T	p.Ala242Val	p.A242V	ENST00000369303	NM_004440.3	242	gCg/gTg																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45003781	45003784	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	65	456	0	ENST00000558401.1:c.41_44delCTCT	p.Ser14PhefsTer29	p.S14Ffs*29	ENST00000558401	NM_004048.2	13	CTCTct/ct																																												NEWRECORD																																		
SOX2	6657	MSKCC	GRCh37	3	181430202	181430202	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	20	144	0	ENST00000325404.1:c.59del	p.Gly20AlafsTer26	p.G20Afs*26	ENST00000325404	NM_003106.3	18	tcG/tc																																												NEWRECORD																																		
TNFRSF14	0	MSKCC	GRCh37	1	2494309	2494309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	67	495	0	ENST00000355716.4:c.700G>A	p.Val234Ile	p.V234I	ENST00000355716	NM_003820.2	234	Gta/Ata																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65321324	65321324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	90	475	1	ENST00000342505.4:c.1516C>A	p.Arg506Ser	p.R506S	ENST00000342505	NM_002227.2	506	Cgc/Agc																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115256439	115256439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	86	509	4	ENST00000369535.4:c.272C>T	p.Ala91Val	p.A91V	ENST00000369535	NM_002524.4	91	gCg/gTg																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48026033	48026033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	74	527	0	ENST00000234420.5:c.911T>C	p.Val304Ala	p.V304A	ENST00000234420	NM_000179.2	304	gTg/gCg																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198265030	198265030	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	91	439	0	ENST00000335508.6:c.2847A>T	p.Gln949His	p.Q949H	ENST00000335508	NM_012433.2	949	caA/caT																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178947116	178947116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	85	457	0	ENST00000263967.3:c.2552T>C	p.Val851Ala	p.V851A	ENST00000263967	NM_006218.2	851	gTg/gCg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56161175	56161175	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	97	470	0	ENST00000399503.3:c.1044C>A	p.Ser348Arg	p.S348R	ENST00000399503	NM_005921.1	348	agC/agA																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157522260	157522260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	82	473	0	ENST00000346085.5:c.4532A>G	p.Gln1511Arg	p.Q1511R	ENST00000346085	NM_020732.3	1511	cAg/cGg																																												NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69625348	69625348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	126	555	0	ENST00000334134.2:c.445G>A	p.Ala149Thr	p.A149T	ENST00000334134	NM_005247.2	149	Gcc/Acc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118391600	118391600	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	57	269	0	ENST00000534358.1:c.11513G>T	p.Arg3838Met	p.R3838M	ENST00000534358	NM_005933.3	3838	aGg/aTg																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	416834	416834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	108	536	0	ENST00000399788.2:c.3716G>A	p.Arg1239Gln	p.R1239Q	ENST00000399788	NM_001042603.1	1239	cGg/cAg																																												NEWRECORD																																		
RAB35	0	MSKCC	GRCh37	12	120541651	120541651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	143	700	0	ENST00000229340.5:c.206G>A	p.Arg69His	p.R69H	ENST00000229340	NM_006861.6	69	cGc/cAc																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36986509	36986509	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	65	535	0	ENST00000354822.5:c.1180A>G	p.Thr394Ala	p.T394A	ENST00000354822	NM_001079668.2	394	Acc/Gcc																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30129432	30129432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	120	654	0	ENST00000263025.4:c.596G>A	p.Gly199Asp	p.G199D	ENST00000263025	NM_002746.2	199	gGc/gAc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991889	72991889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	116	764	0	ENST00000268489.5:c.2156A>G	p.Tyr719Cys	p.Y719C	ENST00000268489	NM_006885.3	719	tAc/tGc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16052769	16052769	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	87	619	0	ENST00000268712.3:c.905A>G	p.Gln302Arg	p.Q302R	ENST00000268712	NM_006311.3	302	cAa/cGa																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38508652	38508652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	110	601	0	ENST00000254066.5:c.700A>G	p.Lys234Glu	p.K234E	ENST00000254066	NM_000964.3	234	Aag/Gag																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533131	63533131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	84	493	4	ENST00000307078.5:c.1763C>A	p.Pro588Gln	p.P588Q	ENST00000307078	NM_004655.3	588	cCg/cAg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5212403	5212403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	94	541	3	ENST00000357368.4:c.4714C>T	p.Arg1572Trp	p.R1572W	ENST00000357368	NM_002850.3	1572	Cgg/Tgg																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988409	36988409	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	13	112	0	ENST00000354822.5:c.244del	p.Ala82ProfsTer19	p.A82Pfs*19	ENST00000354822	NM_001079668.2	82	Gcc/cc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30143052	30143052	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	97	538	0	ENST00000389048.3:c.474del	p.Glu160ArgfsTer26	p.E160Rfs*26	ENST00000389048	NM_004304.4	158	ccC/cc																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176673759	176673759	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	127	438	1	ENST00000439151.2:c.4463del	p.Asn1488MetfsTer15	p.N1488Mfs*15	ENST00000439151	NM_022455.4	1487	Aaa/aa																																												NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933013	39933013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	110	281	0	ENST00000378444.4:c.1586del	p.Asn529ThrfsTer60	p.N529Tfs*60	ENST00000378444	NM_001123385.1	529	aAc/ac																																												NEWRECORD																																		
GPS2	2874	MSKCC	GRCh37	17	7217705	7217707	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs757139280		P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	161	690	0	ENST00000380728.2:c.220_222del	p.Glu74del	p.E74del	ENST00000380728		74	GAG/-																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70360589	70360594	+	inframe_deletion	In_Frame_Del	DEL	AGCAGC	AGCAGC	-			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	44	234	0	ENST00000374080.3:c.6162_6167del	p.Gln2075_Gln2076del	p.Q2075_Q2076del	ENST00000374080		2050	gAGCAGCag/gag																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153271233	153271234	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	86	495	0	ENST00000281708.4:c.544dup	p.Ser182PhefsTer74	p.S182Ffs*74	ENST00000281708	NM_033632.3	182	tct/tTct																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	8	209	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	96	405	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0010428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	10	26	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1742	306	977	0	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	186	609	1	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175650	112175651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	142	436	0	ENST00000257430.4:c.4364dup	p.Asn1455LysfsTer2	p.N1455Kfs*2	ENST00000257430	NM_000038.5	1453	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	420	543	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519925		P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	138	387	0	ENST00000263967.3:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000263967	NM_006218.2	453	Gaa/Caa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49432741	49432741	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	79	298	1	ENST00000301067.7:c.8398C>T	p.Gln2800Ter	p.Q2800*	ENST00000301067	NM_003482.3	2800	Cag/Tag																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	89	257	0	ENST00000318789.4:c.1531-1G>C		p.X511_splice	ENST00000318789	NM_032682.5	511																																													NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50468182	50468182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	107	496	1	ENST00000331340.3:c.1417G>A	p.Asp473Asn	p.D473N	ENST00000331340	NM_006060.4	473	Gat/Aat																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458042	120458042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	138	495	1	ENST00000256646.2:c.7303G>A	p.Asp2435Asn	p.D2435N	ENST00000256646	NM_024408.3	2435	Gac/Aac																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215617242	215617242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	346	468	0	ENST00000260947.4:c.1606G>A	p.Asp536Asn	p.D536N	ENST00000260947	NM_000465.2	536	Gat/Aat																																												NEWRECORD																																		
HIST1H3D	0	MSKCC	GRCh37	6	26197399	26197399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1754	494	867	0	ENST00000356476.2:c.80G>C	p.Arg27Pro	p.R27P	ENST00000356476		27	cGa/cCa																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30672525	30672525	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	333	654	0	ENST00000376406.3:c.4435G>C	p.Asp1479His	p.D1479H	ENST00000376406	NM_014641.2	1479	Gat/Cat																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145741833	145741833	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	303	581	0	ENST00000428558.2:c.670G>C	p.Glu224Gln	p.E224Q	ENST00000428558	NM_004260.3	224	Gag/Cag																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12043951	12043951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	270	443	2	ENST00000396373.4:c.1330G>A	p.Glu444Lys	p.E444K	ENST00000396373	NM_001987.4	444	Gaa/Aaa																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73346883	73346883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	210	438	0	ENST00000377767.4:c.1334C>T	p.Ser445Leu	p.S445L	ENST00000377767	NM_014953.3	445	tCa/tTa																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67473630	67473630	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	139	546	0	ENST00000327367.4:c.710A>C	p.Tyr237Ser	p.Y237S	ENST00000327367	NM_005902.3	237	tAc/tCc																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37868682	37868682	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	221	529	0	ENST00000269571.5:c.1129C>G	p.Leu377Val	p.L377V	ENST00000269571		377	Ctg/Gtg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11138480	11138480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	283	391	0	ENST00000344626.4:c.3236C>T	p.Ser1079Leu	p.S1079L	ENST00000344626	NM_003072.3	1079	tCg/tTg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42798863	42798863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	120	479	0	ENST00000575354.2:c.4435C>G	p.Gln1479Glu	p.Q1479E	ENST00000575354	NM_015125.3	1479	Cag/Gag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44929104	44929105	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	341	300	0	ENST00000377967.4:c.2205dup	p.Glu736ArgfsTer4	p.E736Rfs*4	ENST00000377967	NM_021140.2	735	gga/ggAa																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533628	63533628	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	241	686	0	ENST00000307078.5:c.1526del	p.Gln509ArgfsTer180	p.Q509Rfs*180	ENST00000307078	NM_004655.3	509	cAg/cg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49039374	49039374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	166	495	0	ENST00000267163.4:c.2359C>T	p.Arg787Ter	p.R787*	ENST00000267163	NM_000321.2	787	Cga/Tga																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	173	525	3	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	201	387	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49444172	49444172	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	122	421	0	ENST00000301067.7:c.3199G>T	p.Glu1067Ter	p.E1067*	ENST00000301067	NM_003482.3	1067	Gag/Tag																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88476391	88476391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	167	222	0	ENST00000360948.2:c.1741G>T	p.Ala581Ser	p.A581S	ENST00000360948	NM_001012338.2	581	Gcc/Tcc																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41243925	41243925	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	235	339	0	ENST00000357654.3:c.3623A>C	p.Lys1208Thr	p.K1208T	ENST00000357654	NM_007294.3	1208	aAa/aCa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175665	112175666	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	176	417	0	ENST00000257430.4:c.4375dup	p.Thr1459AsnfsTer3	p.T1459Nfs*3	ENST00000257430	NM_000038.5	1458	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578471	7578483	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGGGGGTGTG	GGGCGGGGGTGTG	-			P-0003618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	92	290	0	ENST00000269305.4:c.447_459delCACACCCCCGCCC	p.Thr150AlafsTer16	p.T150Afs*16	ENST00000269305	NM_001126112.2	149	tcCACACCCCCGCCC/tc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174092	112174093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003618-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	145	315	0	ENST00000257430.4:c.2803dup	p.Tyr935LeufsTer5	p.Y935Lfs*5	ENST00000257430	NM_000038.5	934	act/acTt																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	29	396	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	34	244	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44918276	44918276	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	23	264	0	ENST00000377967.4:c.901C>T	p.Gln301Ter	p.Q301*	ENST00000377967	NM_021140.2	301	Cag/Tag																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71021817	71021817	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	37	472	0	ENST00000318789.4:c.1541G>A	p.Arg514His	p.R514H	ENST00000318789	NM_032682.5	514	cGt/cAt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249011	55249012	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAACCCCACACC			P-0010826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	24	576	0	ENST00000275493.2:c.2316_2317insACACCCAACCCC	p.Pro772_His773insThrProAsnPro	p.P772_H773insTPNP	ENST00000275493	NM_005228.3	770	gac/gaCAACCCCACACCc																																												NEWRECORD																																		
MAP2K2	0	MSKCC	GRCh37	19	4117549	4117549	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	30	396	2	ENST00000262948.5:c.171T>A	p.Phe57Leu	p.F57L	ENST00000262948	NM_030662.3	57	ttT/ttA																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111449	8111450	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	55	621	0	ENST00000346208.3:c.936dup	p.Ala313SerfsTer39	p.A313Sfs*39	ENST00000346208		312	aga/agAa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	184	402	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81610048	81610048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	57	369	0	ENST00000298171.2:c.1646G>A	p.Cys549Tyr	p.C549Y	ENST00000298171	NM_000369.2	549	tGc/tAc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151873825	151873826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	74	454	0	ENST00000262189.6:c.8712dup	p.Val2905CysfsTer20	p.V2905Cfs*20	ENST00000262189	NM_170606.2	2904	-/T																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0011138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	636	434	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0011138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	130	284	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156843550	156843550	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	146	402	0	ENST00000524377.1:c.976A>T	p.Ser326Cys	p.S326C	ENST00000524377	NM_002529.3	326	Agc/Tgc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100553	8100553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	111	353	0	ENST00000346208.3:c.527C>G	p.Ala176Gly	p.A176G	ENST00000346208		176	gCc/gGc																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32439164	32439164	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	130	290	0	ENST00000332351.3:c.909C>A	p.Cys303Ter	p.C303*	ENST00000332351	NM_024426.4	303	tgC/tgA																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112926878	112926878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	107	320	0	ENST00000351677.2:c.1498C>G	p.Gln500Glu	p.Q500E	ENST00000351677	NM_002834.3	500	Cag/Gag																																												NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	358	408	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9775720	9775720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	150	350	0	ENST00000377346.4:c.263G>A	p.Arg88His	p.R88H	ENST00000377346	NM_005026.3	88	cGt/cAt																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108181012	108181012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	178	331	0	ENST00000278616.4:c.5888A>G	p.Asp1963Gly	p.D1963G	ENST00000278616	NM_000051.3	1963	gAt/gGt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	204	560	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99160392	99160392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	169	705	1	ENST00000074304.5:c.871C>T	p.Arg291Trp	p.R291W	ENST00000074304	NM_001134224.1	291	Cgg/Tgg																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145742054	145742054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	102	539	0	ENST00000428558.2:c.449C>A	p.Ser150Tyr	p.S150Y	ENST00000428558	NM_004260.3	150	tCc/tAc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29664443	29664443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	74	698	0	ENST00000358273.4:c.6485A>G	p.Tyr2162Cys	p.Y2162C	ENST00000358273	NM_001042492.2	2162	tAc/tGc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	187	578	0	ENST00000269305.4:c.406del	p.Gln136AsnfsTer34	p.Q136Nfs*34	ENST00000269305	NM_001126112.2	136	Caa/aa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099879	27099881	+	frameshift_variant	Frame_Shift_Del	DEL	ACG	ACG	C			P-0013346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	109	548	0	ENST00000324856.7:c.3758_3760delinsC	p.Asn1253ThrfsTer5	p.N1253Tfs*5	ENST00000324856	NM_006015.4	1253	aACGgc/aCgc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	100	342	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175349	112175353	+	frameshift_variant	Frame_Shift_Del	DEL	AATTT	AATTT	-			P-0007996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	19	266	0	ENST00000257430.4:c.4058_4062del	p.Glu1353ValfsTer20	p.E1353Vfs*20	ENST00000257430	NM_000038.5	1353	gAATTT/g																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120003	70120003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	19	50	0	ENST00000245479.2:c.1005G>A	p.Trp335Ter	p.W335*	ENST00000245479	NM_000346.3	335	tgG/tgA																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54945263	54945263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	13	300	0	ENST00000312783.6:c.1163C>T	p.Ser388Leu	p.S388L	ENST00000312783	NM_198436.1	388	tCa/tTa																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12871157	12871158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	34	137	0	ENST00000228872.4:c.385dup	p.His129ProfsTer8	p.H129Pfs*8	ENST00000228872	NM_004064.3	128	-/C																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47155365	47155365	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0000190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	543	402	0	ENST00000409792.3:c.4715+1G>T		p.X1572_splice	ENST00000409792	NM_014159.6	1572																																													NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4383210	4383210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	210	252	0	ENST00000261254.3:c.4G>A	p.Glu2Lys	p.E2K	ENST00000261254	NM_001759.3	2	Gag/Aag																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29008036	29008036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	620	440	0	ENST00000282397.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000282397	NM_002019.4	245	Ggc/Agc																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37866420	37866420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	399	420	0	ENST00000269571.5:c.725C>T	p.Ala242Val	p.A242V	ENST00000269571		242	gCc/gTc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15288858	15288858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			19	24	18	0	ENST00000263388.2:c.3881G>T	p.Arg1294Leu	p.R1294L	ENST00000263388	NM_000435.2	1294	cGg/cTg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15300207	15300207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	506	431	0	ENST00000263388.2:c.1069A>T	p.Ser357Cys	p.S357C	ENST00000263388	NM_000435.2	357	Agc/Tgc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938952	76938952	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1401	849	857	0	ENST00000373344.5:c.1796C>A	p.Pro599Gln	p.P599Q	ENST00000373344	NM_000489.3	599	cCa/cAa																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49050874	49050875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	396	344	1	ENST00000267163.4:c.2559dupT	p.Asn854Ter	p.N854*	ENST00000267163	NM_000321.2	853	tgt/tgTt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0006374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	71	417	4	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151859704	151859704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	50	441	1	ENST00000262189.6:c.10958C>T	p.Pro3653Leu	p.P3653L	ENST00000262189	NM_170606.2	3653	cCt/cTt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	34	297	0	ENST00000304494.5:c.235dup	p.Thr79AsnfsTer41	p.T79Nfs*41	ENST00000304494	NM_000077.4	79	acc/aAcc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	34	297	0	ENST00000304494.5:c.235dup	p.Thr79AsnfsTer41	p.T79Nfs*41	ENST00000304494	NM_000077.4	79	acc/aAcc																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971122	21971123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	34	297	0	ENST00000304494.5:c.235dup	p.Thr79AsnfsTer41	p.T79Nfs*41	ENST00000304494	NM_000077.4	79	acc/aAcc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380276	25380277	+	missense_variant	Missense_Mutation	DNP	TG	TG	GC			P-0006374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	52	428	0	ENST00000256078.4:c.181_182delinsGC	p.Gln61Ala	p.Q61A	ENST00000256078	NM_033360.2	61	CAa/GCa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	80	255	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	93	504	5	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																												NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19256768	19256769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1202792889		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	45	335	0	ENST00000162023.5:c.944dup	p.Val316SerfsTer6	p.V316Sfs*6	ENST00000162023		315	cca/ccCa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	203	591	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180057230	180057230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	61	534	1	ENST00000261937.6:c.508C>T	p.Arg170Cys	p.R170C	ENST00000261937	NM_182925.4	170	Cgc/Tgc																																												NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	184	982	2	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																												NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39934126	39934127	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	188	489	0	ENST00000378444.4:c.472dup	p.Ser158LysfsTer28	p.S158Kfs*28	ENST00000378444	NM_001123385.1	158	agt/aAgt																																												NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	307	1564	16	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																												NEWRECORD																																		
DNMT1	1786	MSKCC	GRCh37	19	10291083	10291084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755889652		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	68	637	2	ENST00000340748.4:c.387dup	p.Lys130GlnfsTer19	p.K130Qfs*19	ENST00000340748		129	-/C																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420661	49420661	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	80	371	0	ENST00000301067.7:c.15088C>T	p.Arg5030Cys	p.R5030C	ENST00000301067	NM_003482.3	5030	Cgt/Tgt																																												NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1331	262	1334	0	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																												NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	183	645	1	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90958479	90958480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	98	356	0	ENST00000265433.3:c.1958dup	p.Leu654AlafsTer5	p.L654Afs*5	ENST00000265433	NM_002485.4	653	aag/aaAg																																												NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38512401	38512402	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs745553450		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	53	514	1	ENST00000254066.5:c.1319dup	p.Pro441AlafsTer5	p.P441Afs*5	ENST00000254066	NM_000964.3	438	gcc/gCcc																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2154241	2154242	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	60	819	3	ENST00000434045.2:c.686dup	p.Glu230ArgfsTer50	p.E230Rfs*50	ENST00000434045	NM_001127598.1	229	cca/ccCa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139390735	139390736	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	75	926	0	ENST00000277541.6:c.7455dupC	p.Ser2486LeufsTer21	p.S2486Lfs*21	ENST00000277541	NM_017617.3	2485	-/C																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25368433	25368434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	165	559	0	ENST00000256078.4:c.511dup	p.Ile171AsnfsTer14	p.I171Nfs*14	ENST00000256078	NM_033360.2	171	atc/aAtc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29550472	29550473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	76	359	1	ENST00000358273.4:c.1738dup	p.Tyr580LeufsTer8	p.Y580Lfs*8	ENST00000358273	NM_001042492.2	578	ctt/cTtt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11288919	11288919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	71	518	0	ENST00000361445.4:c.2836T>C	p.Phe946Leu	p.F946L	ENST00000361445	NM_004958.3	946	Ttc/Ctc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16255967	16255967	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	81	326	0	ENST00000375759.3:c.3232T>C	p.Ser1078Pro	p.S1078P	ENST00000375759	NM_015001.2	1078	Tca/Cca																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65303624	65303624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	129	566	1	ENST00000342505.4:c.3131C>A	p.Pro1044His	p.P1044H	ENST00000342505	NM_002227.2	1044	cCt/cAt																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156849113	156849113	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	129	885	0	ENST00000524377.1:c.2005T>G	p.Phe669Val	p.F669V	ENST00000524377	NM_002529.3	669	Ttt/Gtt																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206653255	206653255	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	92	568	0	ENST00000367120.3:c.1226A>G	p.Gln409Arg	p.Q409R	ENST00000367120	NM_014002.3	409	cAg/cGg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29446388	29446388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	188	1207	1	ENST00000389048.3:c.3179G>A	p.Arg1060His	p.R1060H	ENST00000389048	NM_004304.4	1060	cGc/cAc																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47641544	47641544	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	108	534	0	ENST00000233146.2:c.929T>A	p.Leu310His	p.L310H	ENST00000233146	NM_000251.2	310	cTt/cAt																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61118836	61118836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	106	410	0	ENST00000295025.8:c.29T>C	p.Ile10Thr	p.I10T	ENST00000295025	NM_002908.2	10	aTa/aCa																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215593573	215593573	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140729292		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	105	440	3	ENST00000260947.4:c.2161G>A	p.Ala721Thr	p.A721T	ENST00000260947	NM_000465.2	721	Gca/Aca																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47125634	47125634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	213	806	0	ENST00000409792.3:c.5636G>A	p.Arg1879His	p.R1879H	ENST00000409792	NM_014159.6	1879	cGc/cAc																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49405903	49405903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	247	1056	1	ENST00000418115.1:c.235G>A	p.Val79Ile	p.V79I	ENST00000418115	NM_001664.2	79	Gtt/Att																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106157633	106157633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	163	593	1	ENST00000380013.4:c.2534A>G	p.Lys845Arg	p.K845R	ENST00000380013	NM_001127208.2	845	aAa/aGa																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106190818	106190818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	161	510	0	ENST00000380013.4:c.4096C>T	p.Arg1366Cys	p.R1366C	ENST00000380013	NM_001127208.2	1366	Cgt/Tgt																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876197	35876197	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	91	504	0	ENST00000303115.3:c.989A>G	p.Gln330Arg	p.Q330R	ENST00000303115	NM_002185.3	330	cAg/cGg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38950228	38950228	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	102	465	0	ENST00000357387.3:c.3722T>C	p.Val1241Ala	p.V1241A	ENST00000357387	NM_152756.3	1241	gTa/gCa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160640	56160640	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	160	593	0	ENST00000399503.3:c.914A>G	p.Asn305Ser	p.N305S	ENST00000399503	NM_005921.1	305	aAc/aGc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178259	56178259	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	156	636	0	ENST00000399503.3:c.3232A>G	p.Lys1078Glu	p.K1078E	ENST00000399503	NM_005921.1	1078	Aaa/Gaa																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57750772	57750772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	162	561	0	ENST00000274289.3:c.1832C>T	p.Ala611Val	p.A611V	ENST00000274289	NM_006622.3	611	gCc/gTc																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86670022	86670022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	64	441	0	ENST00000274376.6:c.1819C>T	p.Pro607Ser	p.P607S	ENST00000274376	NM_002890.2	607	Cca/Tca																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29911288	29911288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	48	142	0	ENST00000376809.5:c.587T>C	p.Leu196Pro	p.L196P	ENST00000376809	NM_002116.7	196	cTg/cCg																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93964384	93964384	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	192	966	0	ENST00000369303.4:c.2513G>A	p.Trp838Ter	p.W838*	ENST00000369303	NM_004440.3	838	tGg/tAg																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149997811	149997811	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	153	512	1	ENST00000253339.5:c.2656C>T	p.Arg886Ter	p.R886*	ENST00000253339		886	Cga/Tga																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150005146	150005146	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	152	531	0	ENST00000253339.5:c.1079A>G	p.Gln360Arg	p.Q360R	ENST00000253339		360	cAa/cGa																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527410	157527410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	124	531	0	ENST00000346085.5:c.5135A>G	p.Asp1712Gly	p.D1712G	ENST00000346085	NM_020732.3	1712	gAt/gGt																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13971178	13971178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	135	553	0	ENST00000405192.2:c.751C>T	p.Pro251Ser	p.P251S	ENST00000405192	NM_001163147.1	251	Ccc/Tcc																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50467672	50467672	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	84	545	0	ENST00000331340.3:c.907A>G	p.Asn303Asp	p.N303D	ENST00000331340	NM_006060.4	303	Aac/Gac																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55231515	55231515	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	72	359	0	ENST00000275493.2:c.1721G>A	p.Arg574Gln	p.R574Q	ENST00000275493	NM_005228.3	574	cGg/cAg																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128850344	128850344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	69	537	0	ENST00000249373.3:c.1607T>C	p.Val536Ala	p.V536A	ENST00000249373	NM_005631.4	536	gTc/gCc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860649	151860649	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs201260588		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	371	912	0	ENST00000262189.6:c.10013A>G	p.Asn3338Ser	p.N3338S	ENST00000262189	NM_170606.2	3338	aAc/aGc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151891344	151891344	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	182	403	0	ENST00000262189.6:c.4510G>A	p.Ala1504Thr	p.A1504T	ENST00000262189	NM_170606.2	1504	Gca/Aca																																												NEWRECORD																																		
NKX3-1	0	MSKCC	GRCh37	8	23540302	23540302	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	45	302	2	ENST00000380871.4:c.101T>C	p.Ile34Thr	p.I34T	ENST00000380871	NM_006167.3	34	aTc/aCc																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209267	98209267	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	131	810	0	ENST00000331920.6:c.4271A>G	p.Asp1424Gly	p.D1424G	ENST00000331920	NM_000264.3	1424	gAt/gGt																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63816974	63816974	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	85	364	0	ENST00000279873.7:c.945A>T	p.Glu315Asp	p.E315D	ENST00000279873	NM_032199.2	315	gaA/gaT																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70446138	70446138	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	105	487	0	ENST00000373644.4:c.5078A>G	p.Asn1693Ser	p.N1693S	ENST00000373644	NM_030625.2	1693	aAc/aGc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108188231	108188231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	77	423	1	ENST00000278616.4:c.6330C>A	p.Asp2110Glu	p.D2110E	ENST00000278616	NM_000051.3	2110	gaC/gaA																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18544183	18544183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	116	531	0	ENST00000266497.5:c.2000T>C	p.Leu667Pro	p.L667P	ENST00000266497		667	cTa/cCa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18699294	18699294	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	159	534	0	ENST00000266497.5:c.3395A>G	p.Gln1132Arg	p.Q1132R	ENST00000266497		1132	cAa/cGa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49427440	49427440	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	104	687	0	ENST00000301067.7:c.11048A>C	p.Gln3683Pro	p.Q3683P	ENST00000301067	NM_003482.3	3683	cAg/cCg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49447056	49447056	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	95	698	0	ENST00000301067.7:c.888A>C	p.Lys296Asn	p.K296N	ENST00000301067	NM_003482.3	296	aaA/aaC																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32914669	32914669	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1588	219	1557	2	ENST00000380152.3:c.6177T>A	p.Ser2059Arg	p.S2059R	ENST00000380152		2059	agT/agA																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99454633	99454633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	185	695	0	ENST00000268035.6:c.1552A>G	p.Arg518Gly	p.R518G	ENST00000268035	NM_000875.3	518	Agg/Ggg																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15961036	15961036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	113	346	0	ENST00000268712.3:c.6184G>T	p.Asp2062Tyr	p.D2062Y	ENST00000268712	NM_006311.3	2062	Gat/Tat																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15967498	15967498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	157	623	0	ENST00000268712.3:c.5105A>G	p.His1702Arg	p.H1702R	ENST00000268712	NM_006311.3	1702	cAc/cGc																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63545668	63545668	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	53	685	0	ENST00000307078.5:c.926A>G	p.Asp309Gly	p.D309G	ENST00000307078	NM_004655.3	309	gAt/gGt																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78914296	78914296	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	54	470	0	ENST00000306801.3:c.2920A>C	p.Ile974Leu	p.I974L	ENST00000306801	NM_020761.2	974	Atc/Ctc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575132	48575132	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	126	491	0	ENST00000342988.3:c.326T>C	p.Leu109Pro	p.L109P	ENST00000342988	NM_005359.5	109	cTa/cCa																																												NEWRECORD																																		
MALT1	0	MSKCC	GRCh37	18	56390403	56390403	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1400	314	1342	1	ENST00000348428.3:c.1142T>C	p.Val381Ala	p.V381A	ENST00000348428	NM_006785.3	381	gTt/gCt																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50910276	50910276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	203	1391	0	ENST00000440232.2:c.1531T>C	p.Tyr511His	p.Y511H	ENST00000440232	NM_002691.3	511	Tac/Cac																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39755579	39755579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	125	643	5	ENST00000288319.7:c.1186G>A	p.Ala396Thr	p.A396T	ENST00000288319	NM_182918.3	396	Gcc/Acc																																												NEWRECORD																																		
ICOSLG	0	MSKCC	GRCh37	21	45656846	45656846	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	38	472	0	ENST00000407780.3:c.310A>G	p.Thr104Ala	p.T104A	ENST00000407780	NM_001283052.1	104	Acc/Gcc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41573882	41573882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	140	677	1	ENST00000263253.7:c.6167G>A	p.Arg2056Gln	p.R2056Q	ENST00000263253	NM_001429.3	2056	cGg/cAg																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39923844	39923844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	52	507	0	ENST00000378444.4:c.3247A>G	p.Ser1083Gly	p.S1083G	ENST00000378444	NM_001123385.1	1083	Agt/Ggt																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70349909	70349909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	199	474	0	ENST00000374080.3:c.3892A>G	p.Lys1298Glu	p.K1298E	ENST00000374080		1298	Aag/Gag																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42791228	42791229	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	72	403	0	ENST00000575354.2:c.293dup	p.Gly99TrpfsTer6	p.G99Wfs*6	ENST00000575354	NM_015125.3	96	-/C																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81392144	81392145	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	151	695	0	ENST00000222390.5:c.132dup	p.Ser45IlefsTer28	p.S45Ifs*28	ENST00000222390	NM_000601.4	44	-/A																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35874636	35874637	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	108	626	0	ENST00000303115.3:c.799dup	p.Arg267LysfsTer3	p.R267Kfs*3	ENST00000303115	NM_002185.3	264	-/A																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3786070	3786071	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	198	974	0	ENST00000262367.5:c.4694dup	p.Glu1566GlyfsTer8	p.E1566Gfs*8	ENST00000262367	NM_004380.2	1565	aag/aaAg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42791472	42791473	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	171	830	0	ENST00000575354.2:c.455dup	p.Leu153ProfsTer7	p.L153Pfs*7	ENST00000575354	NM_015125.3	151	-/T																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060911	38060912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	83	495	1	ENST00000250448.2:c.1077dup	p.Ile360HisfsTer55	p.I360Hfs*55	ENST00000250448	NM_004496.3	359	-/C																																												NEWRECORD																																		
DNMT3B	1789	MSKCC	GRCh37	20	31384650	31384651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756395138		P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	146	949	4	ENST00000328111.2:c.1359dup	p.Leu454AlafsTer11	p.L454Afs*11	ENST00000328111	NM_006892.3	451	gag/gaGg																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	44	355	0	ENST00000407977.2:c.1975_1976dup	p.Pro660ValfsTer41	p.P660Vfs*41	ENST00000407977		659	ggt/ggGGt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156651	106156652	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	150	555	0	ENST00000380013.4:c.1557dupT	p.Gly520TrpfsTer2	p.G520Wfs*2	ENST00000380013	NM_001127208.2	518	att/aTtt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118360575	118360576	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	204	799	0	ENST00000534358.1:c.4551dup	p.Pro1518ThrfsTer17	p.P1518Tfs*17	ENST00000534358	NM_005933.3	1516	-/A																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37686900	37686901	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	142	719	0	ENST00000447079.4:c.3810dup	p.Gly1271ArgfsTer13	p.G1271Rfs*13	ENST00000447079	NM_015083.1	1268	-/C																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15288788	15288789	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	47	209	0	ENST00000263388.2:c.3950dup	p.Gly1318ArgfsTer245	p.G1318Rfs*245	ENST00000263388	NM_000435.2	1317	cca/ccCa																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38946580	38946581	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	93	328	0	ENST00000357387.3:c.4388dup	p.His1463GlnfsTer2	p.H1463Qfs*2	ENST00000357387	NM_152756.3	1463	cat/caAt																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135798768	135798769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	75	390	0	ENST00000298552.3:c.474dup	p.Gly159TrpfsTer59	p.G159Wfs*59	ENST00000298552	NM_001162426.1	158	-/T																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8331622	8331623	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	70	982	0	ENST00000356435.5:c.5493dup	p.Glu1832ArgfsTer36	p.E1832Rfs*36	ENST00000356435		1831	-/A																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47161950	47161951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	110	455	0	ENST00000409792.3:c.4175dup	p.Asn1392LysfsTer6	p.N1392Kfs*6	ENST00000409792	NM_014159.6	1392	aac/aaAc																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188200	10188200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	70	429	0	ENST00000256474.2:c.343C>A	p.His115Asn	p.H115N	ENST00000256474	NM_000551.3	115	Cac/Aac																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158617440	158617440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	173	722	1	ENST00000263640.3:c.1216G>T	p.Ala406Ser	p.A406S	ENST00000263640	NM_001105.4	406	Gcc/Tcc																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90983487	90983488	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0011418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	91	331	0	ENST00000265433.3:c.614_615dup	p.Gly206LeufsTer26	p.G206Lfs*26	ENST00000265433	NM_002485.4	205	-/TT																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47098737	47098737	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011418-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	113	601	0	ENST00000409792.3:c.6537del	p.Ser2180AlafsTer68	p.S2180Afs*68	ENST00000409792	NM_014159.6	2179	ccC/cc																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45008529	45008529	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	99	708	0	ENST00000558401.1:c.349C>T	p.Arg117Ter	p.R117*	ENST00000558401	NM_004048.2	117	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	136	699	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	80	369	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	191	809	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	110	500	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	136	763	3	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38967279	38967279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	77	514	0	ENST00000357387.3:c.1202G>A	p.Arg401His	p.R401H	ENST00000357387	NM_152756.3	401	cGt/cAt																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	62	678	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27089730	27089730	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	88	339	0	ENST00000324856.7:c.2686G>T	p.Glu896Ter	p.E896*	ENST00000324856	NM_006015.4	896	Gaa/Taa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509723	106509723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	108	606	2	ENST00000359195.3:c.1717G>T	p.Glu573Ter	p.E573*	ENST00000359195	NM_002649.2	573	Gaa/Taa																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63661997	63661997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	109	495	0	ENST00000279873.7:c.101G>T	p.Arg34Ile	p.R34I	ENST00000279873	NM_032199.2	34	aGa/aTa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32907000	32907000	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	64	368	0	ENST00000380152.3:c.1385A>G	p.Glu462Gly	p.E462G	ENST00000380152		462	gAa/gGa																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93956552	93956552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	192	945	0	ENST00000369303.4:c.2684G>A	p.Arg895Gln	p.R895Q	ENST00000369303	NM_004440.3	895	cGa/cAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	51	245	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	95	617	0	ENST00000256078.4:c.351A>C	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaC																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	159	830	0	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30322774	30322774	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	24	360	0	ENST00000322652.5:c.1787C>A	p.Thr596Asn	p.T596N	ENST00000322652	NM_015355.2	596	aCc/aAc																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49932714	49932714	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144584611		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	192	930	2	ENST00000296474.3:c.3157C>T	p.Arg1053Trp	p.R1053W	ENST00000296474	NM_002447.2	1053	Cgg/Tgg																																												NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106197563	106197563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745668941		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	138	748	1	ENST00000380013.4:c.5896C>T	p.Arg1966Cys	p.R1966C	ENST00000380013	NM_001127208.2	1966	Cgt/Tgt																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30681476	30681476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	118	615	0	ENST00000376406.3:c.536G>A	p.Arg179His	p.R179H	ENST00000376406	NM_014641.2	179	cGt/cAt																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856364	111856364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	24	219	1	ENST00000341259.2:c.415C>T	p.Arg139Cys	p.R139C	ENST00000341259	NM_005475.2	139	Cgc/Tgc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55968610	55968610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	182	792	0	ENST00000263923.4:c.2053G>A	p.Glu685Lys	p.E685K	ENST00000263923	NM_002253.2	685	Gaa/Aaa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16040679	16040679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	122	651	0	ENST00000268712.3:c.1455G>T	p.Glu485Asp	p.E485D	ENST00000268712	NM_006311.3	485	gaG/gaT																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073667	8073667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1291	146	949	1	ENST00000377482.5:c.992G>A	p.Arg331His	p.R331H	ENST00000377482	NM_018948.3	331	cGc/cAc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	116	618	0	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149983275	149983275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	104	492	1	ENST00000253339.5:c.2983C>T	p.Arg995Cys	p.R995C	ENST00000253339		995	Cgc/Tgc																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119169179	119169179	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150811339		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	114	503	0	ENST00000264033.4:c.2363G>A	p.Arg788Gln	p.R788Q	ENST00000264033	NM_005188.3	788	cGa/cAa																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	102	642	0	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372343	55372343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	63	361	0	ENST00000297316.4:c.1033G>A	p.Gly345Ser	p.G345S	ENST00000297316	NM_022454.3	345	Ggc/Agc																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61118821	61118821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146326268		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	73	408	2	ENST00000295025.8:c.14C>T	p.Ala5Val	p.A5V	ENST00000295025	NM_002908.2	5	gCg/gTg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42002918	42002918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	147	835	1	ENST00000219905.7:c.2455C>T	p.Arg819Cys	p.R819C	ENST00000219905	NM_001164273.1	819	Cgt/Tgt																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	64	448	2	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151877154	151877154	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	119	527	0	ENST00000262189.6:c.7207C>T	p.Arg2403Ter	p.R2403*	ENST00000262189	NM_170606.2	2403	Cga/Tga																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6031648	6031648	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116314131		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	120	512	2	ENST00000265849.7:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000265849	NM_000535.5	315	cGa/cAa																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119582439	119582439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	56	254	0	ENST00000316626.5:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000316626		321	cGa/cAa																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81554305	81554305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	140	817	1	ENST00000298171.2:c.325C>T	p.Arg109Trp	p.R109W	ENST00000298171	NM_000369.2	109	Cgg/Tgg																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	127	760	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10260146	10260146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	138	650	3	ENST00000340748.4:c.2521G>A	p.Glu841Lys	p.E841K	ENST00000340748		841	Gaa/Aaa																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41765576	41765576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	130	714	0	ENST00000301178.4:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000301178	NM_021913.4	818	Gaa/Aaa																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39690066	39690066	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	61	320	0	ENST00000361337.2:c.91C>T	p.Arg31Ter	p.R31*	ENST00000361337	NM_003286.2	31	Cga/Tga																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123325170	123325170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	108	539	0	ENST00000358487.5:c.158C>T	p.Ala53Val	p.A53V	ENST00000358487	NM_000141.4	53	gCg/gTg																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118343913	118343913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	114	503	0	ENST00000534358.1:c.2039C>T	p.Ser680Leu	p.S680L	ENST00000534358	NM_005933.3	680	tCg/tTg																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66727423	66727423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	81	488	3	ENST00000307102.5:c.139C>T	p.Arg47Ter	p.R47*	ENST00000307102	NM_002755.3	47	Cga/Tga																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12028618	12028618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	131	623	0	ENST00000353533.5:c.821G>T	p.Arg274Ile	p.R274I	ENST00000353533	NM_003010.3	274	aGa/aTa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	126	604	1	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	172	878	2	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81953228	81953228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	163	874	7	ENST00000359376.3:c.2194C>T	p.Arg732Cys	p.R732C	ENST00000359376	NM_002661.3	732	Cgc/Tgc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187510225	187510225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	141	690	3	ENST00000441802.2:c.13288G>A	p.Asp4430Asn	p.D4430N	ENST00000441802	NM_005245.3	4430	Gac/Aac																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46285669	46285669	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	117	550	0	ENST00000334344.6:c.5029C>T	p.Arg1677Ter	p.R1677*	ENST00000334344	NM_152641.2	1677	Cga/Tga																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	120	709	0	ENST00000320574.5:c.1231G>C	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ctg																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508059	106508059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142380460		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	72	280	0	ENST00000359195.3:c.53G>A	p.Arg18Gln	p.R18Q	ENST00000359195	NM_002649.2	18	cGa/cAa																																												NEWRECORD																																		
MYCL1	0	MSKCC	GRCh37	1	40363091	40363091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142406322		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	150	632	0	ENST00000397332.2:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000397332	NM_001033082.2	380	Cgg/Tgg																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198281544	198281544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	167	722	0	ENST00000335508.6:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000335508	NM_012433.2	196	cGa/cAa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117665261	117665261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	91	545	1	ENST00000368508.3:c.4486G>T	p.Asp1496Tyr	p.D1496Y	ENST00000368508	NM_002944.2	1496	Gac/Tac																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59763428	59763428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	92	499	0	ENST00000259008.2:c.2674C>A	p.Leu892Ile	p.L892I	ENST00000259008	NM_032043.2	892	Ctt/Att																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252940	36252940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	131	522	0	ENST00000300305.3:c.422C>T	p.Ser141Leu	p.S141L	ENST00000300305		141	tCg/tTg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108163458	108163458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	129	693	1	ENST00000278616.4:c.4549C>A	p.Leu1517Ile	p.L1517I	ENST00000278616	NM_000051.3	1517	Ctt/Att																																												NEWRECORD																																		
MYD88	0	MSKCC	GRCh37	3	38181926	38181926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	97	550	1	ENST00000396334.3:c.550G>A	p.Asp184Asn	p.D184N	ENST00000396334	NM_002468.4	184	Gac/Aac																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251595	212251595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	117	514	1	ENST00000342788.4:c.3464G>A	p.Arg1155Gln	p.R1155Q	ENST00000342788	NM_005235.2	1155	cGa/cAa																																												NEWRECORD																																		
TNFRSF14	0	MSKCC	GRCh37	1	2489229	2489229	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	144	784	0	ENST00000355716.4:c.134A>G	p.Asp45Gly	p.D45G	ENST00000355716	NM_003820.2	45	gAc/gGc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11188180	11188180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	64	332	0	ENST00000361445.4:c.5914C>T	p.Leu1972Phe	p.L1972F	ENST00000361445	NM_004958.3	1972	Ctc/Ttc																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36932164	36932164	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201556754		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	171	888	4	ENST00000361632.4:c.2305C>T	p.Arg769Cys	p.R769C	ENST00000361632		769	Cgc/Tgc																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43804370	43804370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	153	613	1	ENST00000372470.3:c.370G>T	p.Val124Phe	p.V124F	ENST00000372470	NM_005373.2	124	Gtc/Ttc																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46511630	46511630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	130	670	0	ENST00000262741.5:c.1147C>T	p.Arg383Cys	p.R383C	ENST00000262741	NM_003629.3	383	Cgt/Tgt																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46531829	46531829	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	79	645	0	ENST00000262741.5:c.518A>C	p.Asn173Thr	p.N173T	ENST00000262741	NM_003629.3	173	aAt/aCt																																												NEWRECORD																																		
BCL10	0	MSKCC	GRCh37	1	85733461	85733461	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1228	227	1063	0	ENST00000370580.1:c.551A>C	p.Asn184Thr	p.N184T	ENST00000370580	NM_003921.4	184	aAt/aCt																																												NEWRECORD																																		
BCL10	0	MSKCC	GRCh37	1	85736321	85736321	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	166	783	0	ENST00000370580.1:c.326T>C	p.Ile109Thr	p.I109T	ENST00000370580	NM_003921.4	109	aTa/aCa																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115251227	115251227	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	160	707	3	ENST00000369535.4:c.499C>T	p.Arg167Ter	p.R167*	ENST00000369535	NM_002524.4	167	Cga/Tga																																												NEWRECORD																																		
MCL1	0	MSKCC	GRCh37	1	150551757	150551757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	24	138	0	ENST00000369026.2:c.250G>T	p.Ala84Ser	p.A84S	ENST00000369026	NM_021960.4	84	Gcc/Tcc																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155874172	155874172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	172	728	1	ENST00000368323.3:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000368323	NM_006912.5	120	cGa/cAa																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162725452	162725452	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	131	637	0	ENST00000367921.3:c.566-2A>G		p.X189_splice	ENST00000367921	NM_006182.2	189																																													NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243809195	243809195	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	50	603	0	ENST00000263826.5:c.429G>T	p.Lys143Asn	p.K143N	ENST00000263826	NM_005465.4	143	aaG/aaT																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16085689	16085689	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	111	617	0	ENST00000281043.3:c.865T>C	p.Ser289Pro	p.S289P	ENST00000281043	NM_005378.4	289	Tcc/Ccc																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25470522	25470522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	129	614	2	ENST00000264709.3:c.952C>T	p.Arg318Trp	p.R318W	ENST00000264709	NM_175629.2	318	Cgg/Tgg																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25965940	25965940	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	121	596	0	ENST00000435504.4:c.3266A>G	p.Asn1089Ser	p.N1089S	ENST00000435504		1089	aAc/aGc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29451881	29451881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	152	733	0	ENST00000389048.3:c.2684C>A	p.Ser895Tyr	p.S895Y	ENST00000389048	NM_004304.4	895	tCt/tAt																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47637243	47637243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	102	463	0	ENST00000233146.2:c.377G>A	p.Gly126Asp	p.G126D	ENST00000233146	NM_000251.2	126	gGc/gAc																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48033605	48033605	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	38	310	0	ENST00000234420.5:c.3816A>C	p.Glu1272Asp	p.E1272D	ENST00000234420	NM_000179.2	1272	gaA/gaC																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61128173	61128173	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	61	291	0	ENST00000295025.8:c.349G>T	p.Glu117Ter	p.E117*	ENST00000295025	NM_002908.2	117	Gaa/Taa																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61713094	61713094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	83	391	2	ENST00000401558.2:c.2317G>A	p.Ala773Thr	p.A773T	ENST00000401558	NM_003400.3	773	Gct/Act																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61753652	61753652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	70	396	0	ENST00000401558.2:c.131G>T	p.Arg44Ile	p.R44I	ENST00000401558	NM_003400.3	44	aGa/aTa																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178095695	178095695	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	175	752	0	ENST00000397062.3:c.1636A>C	p.Asn546His	p.N546H	ENST00000397062	NM_006164.4	546	Aat/Cat																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190742014	190742014	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	111	544	0	ENST00000441310.2:c.2651T>A	p.Leu884Gln	p.L884Q	ENST00000441310	NM_000534.4	884	cTa/cAa																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198262793	198262793	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	137	537	0	ENST00000335508.6:c.3182A>C	p.Glu1061Ala	p.E1061A	ENST00000335508	NM_012433.2	1061	gAg/gCg																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	137	671	1	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149601	202149601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	147	694	1	ENST00000358485.4:c.1042G>A	p.Val348Ile	p.V348I	ENST00000358485	NM_001080125.1	348	Gta/Ata																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212576844	212576844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	109	578	0	ENST00000342788.4:c.1055A>G	p.Asn352Ser	p.N352S	ENST00000342788	NM_005235.2	352	aAc/aGc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212652753	212652753	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	94	555	0	ENST00000342788.4:c.553G>T	p.Gly185Ter	p.G185*	ENST00000342788	NM_005235.2	185	Gga/Tga																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215595211	215595211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	65	621	1	ENST00000260947.4:c.1925G>T	p.Arg642Ile	p.R642I	ENST00000260947	NM_000465.2	642	aGa/aTa																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220439864	220439864	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	135	858	0	ENST00000243786.2:c.717G>C	p.Trp239Cys	p.W239C	ENST00000243786	NM_002191.3	239	tgG/tgC																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227660327	227660327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	44	296	0	ENST00000305123.5:c.3128C>T	p.Ser1043Phe	p.S1043F	ENST00000305123	NM_005544.2	1043	tCc/tTc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30686286	30686286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	139	549	0	ENST00000359013.4:c.217C>T	p.Pro73Ser	p.P73S	ENST00000359013	NM_001024847.2	73	Cca/Tca																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47161694	47161694	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	137	660	0	ENST00000409792.3:c.4432G>T	p.Glu1478Ter	p.E1478*	ENST00000409792	NM_014159.6	1478	Gaa/Taa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165106	47165106	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	58	380	0	ENST00000409792.3:c.1020A>C	p.Lys340Asn	p.K340N	ENST00000409792	NM_014159.6	340	aaA/aaC																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52623223	52623223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	93	563	0	ENST00000394830.3:c.2828T>C	p.Leu943Ser	p.L943S	ENST00000394830	NM_018313.4	943	tTa/tCa																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71027140	71027140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	95	510	0	ENST00000318789.4:c.1187C>T	p.Ser396Leu	p.S396L	ENST00000318789	NM_032682.5	396	tCg/tTg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259016	89259016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	68	255	0	ENST00000336596.2:c.160G>A	p.Glu54Lys	p.E54K	ENST00000336596	NM_005233.5	54	Gag/Aag																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259578	89259578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	77	409	0	ENST00000336596.2:c.722G>T	p.Arg241Met	p.R241M	ENST00000336596	NM_005233.5	241	aGg/aTg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89448485	89448485	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	90	509	0	ENST00000336596.2:c.1449T>G	p.Ser483Arg	p.S483R	ENST00000336596	NM_005233.5	483	agT/agG																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89457220	89457220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	74	430	0	ENST00000336596.2:c.1701C>A	p.Phe567Leu	p.F567L	ENST00000336596	NM_005233.5	567	ttC/ttA																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138400852	138400852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	84	739	1	ENST00000289153.2:c.2461C>T	p.Arg821Cys	p.R821C	ENST00000289153	NM_006219.2	821	Cgc/Tgc																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138417818	138417818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	144	682	1	ENST00000289153.2:c.1701G>T	p.Glu567Asp	p.E567D	ENST00000289153	NM_006219.2	567	gaG/gaT																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142180893	142180893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	99	596	0	ENST00000350721.4:c.7081C>A	p.His2361Asn	p.H2361N	ENST00000350721	NM_001184.3	2361	Cat/Aat																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142274755	142274755	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	90	471	1	ENST00000350721.4:c.2305C>A	p.Leu769Ile	p.L769I	ENST00000350721	NM_001184.3	769	Cta/Ata																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142275252	142275252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	113	585	0	ENST00000350721.4:c.2051C>A	p.Ser684Tyr	p.S684Y	ENST00000350721	NM_001184.3	684	tCt/tAt																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185184727	185184727	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	143	649	0	ENST00000265026.3:c.1619A>G	p.His540Arg	p.H540R	ENST00000265026	NM_004721.4	540	cAc/cGc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189526295	189526295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	101	386	4	ENST00000264731.3:c.559G>A	p.Ala187Thr	p.A187T	ENST00000264731	NM_003722.4	187	Gcc/Acc																																												NEWRECORD																																		
PHOX2B	0	MSKCC	GRCh37	4	41750542	41750542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	103	598	0	ENST00000226382.2:c.86C>T	p.Ala29Val	p.A29V	ENST00000226382	NM_003924.3	29	gCc/gTc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55130038	55130038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	133	642	1	ENST00000257290.5:c.572C>T	p.Ala191Val	p.A191V	ENST00000257290	NM_006206.4	191	gCc/gTc																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66218771	66218771	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	92	686	0	ENST00000273854.3:c.2287A>G	p.Thr763Ala	p.T763A	ENST00000273854	NM_004439.5	763	Aca/Gca																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66231761	66231761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	88	486	0	ENST00000273854.3:c.1939G>T	p.Val647Leu	p.V647L	ENST00000273854	NM_004439.5	647	Gta/Tta																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467917	66467917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	121	657	0	ENST00000273854.3:c.352A>G	p.Ile118Val	p.I118V	ENST00000273854	NM_004439.5	118	Atc/Gtc																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467948	66467948	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	62	675	0	ENST00000273854.3:c.321G>T	p.Gln107His	p.Q107H	ENST00000273854	NM_004439.5	107	caG/caT																																												NEWRECORD																																		
FAM175A	0	MSKCC	GRCh37	4	84406219	84406219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	96	456	1	ENST00000321945.7:c.7G>A	p.Gly3Arg	p.G3R	ENST00000321945	NM_139076.2	3	Ggg/Agg																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143081579	143081579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	125	619	0	ENST00000262992.4:c.1495G>A	p.Asp499Asn	p.D499N	ENST00000262992	NM_001101669.1	499	Gac/Aac																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143081594	143081594	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	124	627	0	ENST00000262992.4:c.1480G>T	p.Glu494Ter	p.E494*	ENST00000262992	NM_001101669.1	494	Gag/Tag																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153249456	153249456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	138	685	1	ENST00000281708.4:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000281708	NM_033632.3	441	cGg/cAg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187628622	187628622	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	154	708	0	ENST00000441802.2:c.2360A>C	p.Lys787Thr	p.K787T	ENST00000441802	NM_005245.3	787	aAa/aCa																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38952460	38952460	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	105	444	0	ENST00000357387.3:c.2965A>G	p.Asn989Asp	p.N989D	ENST00000357387	NM_152756.3	989	Aac/Gac																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57753031	57753031	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs139008001		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	136	639	0	ENST00000274289.3:c.985A>G	p.Ile329Val	p.I329V	ENST00000274289	NM_006622.3	329	Att/Gtt																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86642542	86642542	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	38	325	0	ENST00000274376.6:c.1102+1G>A		p.X368_splice	ENST00000274376	NM_002890.2	368																																													NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86659246	86659246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	107	688	1	ENST00000274376.6:c.1535G>A	p.Arg512Gln	p.R512Q	ENST00000274376	NM_002890.2	512	cGa/cAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112111411	112111411	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	83	482	0	ENST00000257430.4:c.508G>T	p.Asp170Tyr	p.D170Y	ENST00000257430	NM_000038.5	170	Gat/Tat																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173303	112173303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	95	596	0	ENST00000257430.4:c.2012C>A	p.Ser671Tyr	p.S671Y	ENST00000257430	NM_000038.5	671	tCt/tAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177139	112177139	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	120	598	0	ENST00000257430.4:c.5848A>C	p.Lys1950Gln	p.K1950Q	ENST00000257430	NM_000038.5	1950	Aag/Cag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177152	112177152	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	94	546	0	ENST00000257430.4:c.5861T>G	p.Phe1954Cys	p.F1954C	ENST00000257430	NM_000038.5	1954	tTt/tGt																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131944824	131944824	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	54	297	0	ENST00000265335.6:c.2845G>T	p.Glu949Ter	p.E949*	ENST00000265335		949	Gag/Tag																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176562826	176562826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	153	592	1	ENST00000439151.2:c.722G>T	p.Arg241Ile	p.R241I	ENST00000439151	NM_022455.4	241	aGa/aTa																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30673310	30673310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1273	279	1063	1	ENST00000376406.3:c.3650G>A	p.Arg1217Gln	p.R1217Q	ENST00000376406	NM_014641.2	1217	cGa/cAa																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32181016	32181016	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	111	585	0	ENST00000375023.3:c.2334T>G	p.Asn778Lys	p.N778K	ENST00000375023	NM_004557.3	778	aaT/aaG																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32189077	32189077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	81	540	0	ENST00000375023.3:c.477C>A	p.Phe159Leu	p.F159L	ENST00000375023	NM_004557.3	159	ttC/ttA																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112015685	112015685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	176	849	0	ENST00000368678.4:c.1157G>T	p.Arg386Ile	p.R386I	ENST00000368678		386	aGa/aTa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117680985	117680985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	99	420	2	ENST00000368508.3:c.3635G>A	p.Arg1212His	p.R1212H	ENST00000368508	NM_002944.2	1212	cGc/cAc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117681019	117681019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	137	568	0	ENST00000368508.3:c.3601G>T	p.Gly1201Trp	p.G1201W	ENST00000368508	NM_002944.2	1201	Ggg/Tgg																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137519451	137519451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	94	390	0	ENST00000367739.4:c.1187C>T	p.Ser396Leu	p.S396L	ENST00000367739	NM_000416.2	396	tCg/tTg																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137519731	137519731	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	42	403	0	ENST00000367739.4:c.907A>G	p.Lys303Glu	p.K303E	ENST00000367739	NM_000416.2	303	Aaa/Gaa																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137527278	137527278	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146914620		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	116	568	2	ENST00000367739.4:c.368G>A	p.Arg123Gln	p.R123Q	ENST00000367739	NM_000416.2	123	cGa/cAa																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150005447	150005447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	142	707	1	ENST00000253339.5:c.778G>T	p.Gly260Cys	p.G260C	ENST00000253339		260	Ggt/Tgt																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162475133	162475133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	103	737	0	ENST00000366898.1:c.608G>T	p.Gly203Val	p.G203V	ENST00000366898	NM_004562.2	203	gGg/gTg																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2974260	2974260	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	95	522	0	ENST00000396946.4:c.1345C>A	p.Leu449Met	p.L449M	ENST00000396946	NM_032415.4	449	Ctg/Atg																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50468285	50468285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	69	386	0	ENST00000331340.3:c.1520C>T	p.Ser507Leu	p.S507L	ENST00000331340	NM_006060.4	507	tCg/tTg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55224510	55224510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	121	701	0	ENST00000275493.2:c.1192G>A	p.Val398Ile	p.V398I	ENST00000275493	NM_005228.3	398	Gta/Ata																																												NEWRECORD																																		
CDK6	0	MSKCC	GRCh37	7	92404108	92404108	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	131	548	2	ENST00000265734.4:c.271G>T	p.Glu91Ter	p.E91*	ENST00000265734	NM_001259.6	91	Gaa/Taa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509182	106509182	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	131	689	0	ENST00000359195.3:c.1176A>C	p.Gln392His	p.Q392H	ENST00000359195	NM_002649.2	392	caA/caC																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116340201	116340201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	134	604	0	ENST00000397752.3:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000397752	NM_000245.2	355	Gaa/Aaa																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116417442	116417442	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	84	566	0	ENST00000397752.3:c.3260-1G>A		p.X1087_splice	ENST00000397752	NM_000245.2	1087																																													NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116435812	116435812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	176	828	0	ENST00000397752.3:c.3902G>T	p.Arg1301Ile	p.R1301I	ENST00000397752	NM_000245.2	1301	aGa/aTa																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140494182	140494182	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	142	674	1	ENST00000288602.6:c.1066C>A	p.Gln356Lys	p.Q356K	ENST00000288602	NM_004333.4	356	Caa/Aaa																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140494188	140494188	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	137	642	0	ENST00000288602.6:c.1060C>T	p.Arg354Ter	p.R354*	ENST00000288602	NM_004333.4	354	Cga/Tga																																												NEWRECORD																																		
RHEB	0	MSKCC	GRCh37	7	151164278	151164278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	145	594	0	ENST00000262187.5:c.482G>A	p.Arg161Gln	p.R161Q	ENST00000262187	NM_005614.3	161	cGa/cAa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151859303	151859303	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	113	546	0	ENST00000262189.6:c.11359T>C	p.Ser3787Pro	p.S3787P	ENST00000262189	NM_170606.2	3787	Tct/Cct																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874616	151874616	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	109	616	4	ENST00000262189.6:c.7922C>A	p.Ser2641Ter	p.S2641*	ENST00000262189	NM_170606.2	2641	tCa/tAa																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101910053	101910053	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	111	544	2	ENST00000374994.4:c.1373G>A	p.Trp458Ter	p.W458*	ENST00000374994	NM_004612.2	458	tGg/tAg																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135797217	135797217	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	123	631	0	ENST00000298552.3:c.652G>T	p.Glu218Ter	p.E218*	ENST00000298552	NM_001162426.1	218	Gaa/Taa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139393588	139393588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	113	642	0	ENST00000277541.6:c.6058G>A	p.Asp2020Asn	p.D2020N	ENST00000277541	NM_017617.3	2020	Gac/Aac																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139408975	139408975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	91	469	0	ENST00000277541.6:c.2194G>A	p.Asp732Asn	p.D732N	ENST00000277541	NM_017617.3	732	Gac/Aac																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139409769	139409769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	99	536	3	ENST00000277541.6:c.1987G>A	p.Glu663Lys	p.E663K	ENST00000277541	NM_017617.3	663	Gag/Aag																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333069	70333069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	150	765	0	ENST00000373644.4:c.974C>A	p.Ser325Tyr	p.S325Y	ENST00000373644	NM_030625.2	325	tCt/tAt																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70405821	70405821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	120	632	0	ENST00000373644.4:c.3335T>C	p.Val1112Ala	p.V1112A	ENST00000373644	NM_030625.2	1112	gTa/gCa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70406103	70406103	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	107	515	0	ENST00000373644.4:c.3617T>A	p.Phe1206Tyr	p.F1206Y	ENST00000373644	NM_030625.2	1206	tTt/tAt																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88672088	88672088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	39	206	0	ENST00000372037.3:c.622G>T	p.Asp208Tyr	p.D208Y	ENST00000372037	NM_004329.2	208	Gac/Tac																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692918	89692918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	78	400	0	ENST00000371953.3:c.402G>T	p.Met134Ile	p.M134I	ENST00000371953	NM_000314.4	134	atG/atT																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741411	17741411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	163	704	0	ENST00000250003.3:c.82G>A	p.Asp28Asn	p.D28N	ENST00000250003	NM_002478.4	28	Gac/Aac																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77043819	77043819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	189	765	2	ENST00000356341.3:c.1507G>A	p.Glu503Lys	p.E503K	ENST00000356341	NM_002576.4	503	Gag/Aag																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77047151	77047151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	151	708	1	ENST00000356341.3:c.1393C>T	p.Leu465Phe	p.L465F	ENST00000356341	NM_002576.4	465	Ctc/Ttc																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102201966	102201966	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	144	795	0	ENST00000263464.3:c.1318G>T	p.Glu440Ter	p.E440*	ENST00000263464	NM_001165.4	440	Gaa/Taa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108160347	108160347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	63	322	0	ENST00000278616.4:c.4255C>A	p.Leu1419Ile	p.L1419I	ENST00000278616	NM_000051.3	1419	Ctt/Att																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118342998	118342998	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	112	470	0	ENST00000534358.1:c.1124T>G	p.Leu375Arg	p.L375R	ENST00000534358	NM_005933.3	375	cTc/cGc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118343956	118343956	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	121	491	0	ENST00000534358.1:c.2082C>A	p.Ser694Arg	p.S694R	ENST00000534358	NM_005933.3	694	agC/agA																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344944	118344944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	104	485	1	ENST00000534358.1:c.3070G>A	p.Ala1024Thr	p.A1024T	ENST00000534358	NM_005933.3	1024	Gcc/Acc																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	422312	422312	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	144	802	0	ENST00000399788.2:c.2946G>T	p.Lys982Asn	p.K982N	ENST00000399788	NM_001042603.1	982	aaG/aaT																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12037430	12037430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	138	691	0	ENST00000396373.4:c.1061A>G	p.Tyr354Cys	p.Y354C	ENST00000396373	NM_001987.4	354	tAc/tGc																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435088	18435088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	75	491	0	ENST00000266497.5:c.73C>A	p.Leu25Ile	p.L25I	ENST00000266497		25	Ctc/Atc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46240719	46240719	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	117	537	0	ENST00000334344.6:c.1579T>C	p.Trp527Arg	p.W527R	ENST00000334344	NM_152641.2	527	Tgg/Cgg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49425016	49425016	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	171	697	0	ENST00000301067.7:c.13472T>G	p.Ile4491Ser	p.I4491S	ENST00000301067	NM_003482.3	4491	aTt/aGt																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50479274	50479274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	60	471	0	ENST00000394963.4:c.122G>A	p.Gly41Asp	p.G41D	ENST00000394963	NM_003076.4	41	gGc/gAc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56478938	56478938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	146	730	1	ENST00000267101.3:c.394C>T	p.Arg132Cys	p.R132C	ENST00000267101	NM_001982.3	132	Cgc/Tgc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56490564	56490564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	110	602	0	ENST00000267101.3:c.2208G>T	p.Lys736Asn	p.K736N	ENST00000267101	NM_001982.3	736	aaG/aaT																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121432067	121432067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	147	688	1	ENST00000257555.6:c.814C>T	p.Arg272Cys	p.R272C	ENST00000257555		272	Cgc/Tgc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133201360	133201360	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	143	702	0	ENST00000320574.5:c.6784G>T	p.Ala2262Ser	p.A2262S	ENST00000320574	NM_006231.2	2262	Gcc/Tcc																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26967543	26967543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	54	659	0	ENST00000381527.3:c.686C>T	p.Thr229Met	p.T229M	ENST00000381527	NM_001260.1	229	aCg/aTg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28931804	28931804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	114	628	0	ENST00000282397.4:c.2135G>T	p.Gly712Val	p.G712V	ENST00000282397	NM_002019.4	712	gGa/gTa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29005299	29005299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	109	537	0	ENST00000282397.4:c.962C>A	p.Ser321Tyr	p.S321Y	ENST00000282397	NM_002019.4	321	tCt/tAt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32906611	32906611	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	37	437	0	ENST00000380152.3:c.996T>G	p.Ile332Met	p.I332M	ENST00000380152		332	atT/atG																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32906930	32906930	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	52	318	0	ENST00000380152.3:c.1315T>G	p.Phe439Val	p.F439V	ENST00000380152		439	Ttt/Gtt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32912209	32912209	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	185	997	0	ENST00000380152.3:c.3717A>C	p.Lys1239Asn	p.K1239N	ENST00000380152		1239	aaA/aaC																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32954027	32954027	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	93	590	1	ENST00000380152.3:c.9094A>T	p.Lys3032Ter	p.K3032*	ENST00000380152		3032	Aaa/Taa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32972643	32972643	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	87	457	0	ENST00000380152.3:c.9993T>G	p.Ile3331Met	p.I3331M	ENST00000380152		3331	atT/atG																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32972674	32972674	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	92	554	0	ENST00000380152.3:c.10024G>A	p.Glu3342Lys	p.E3342K	ENST00000380152		3342	Gaa/Aaa																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110436912	110436912	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	28	209	0	ENST00000375856.3:c.1489T>G	p.Phe497Val	p.F497V	ENST00000375856	NM_003749.2	497	Ttc/Gtc																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81557479	81557479	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	92	613	0	ENST00000298171.2:c.459C>A	p.Phe153Leu	p.F153L	ENST00000298171	NM_000369.2	153	ttC/ttA																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41961238	41961238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	194	1018	0	ENST00000219905.7:c.146C>T	p.Ala49Val	p.A49V	ENST00000219905	NM_001164273.1	49	gCt/gTt																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007686	45007686	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	100	438	0	ENST00000558401.1:c.133T>G	p.Cys45Gly	p.C45G	ENST00000558401	NM_004048.2	45	Tgc/Ggc																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007818	45007818	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	118	516	1	ENST00000558401.1:c.265G>T	p.Glu89Ter	p.E89*	ENST00000558401	NM_004048.2	89	Gaa/Taa																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91354503	91354503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	97	470	0	ENST00000355112.3:c.3943C>T	p.Leu1315Phe	p.L1315F	ENST00000355112	NM_000057.2	1315	Ctc/Ttc																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2108760	2108760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	137	736	1	ENST00000219476.3:c.861G>T	p.Glu287Asp	p.E287D	ENST00000219476	NM_000548.3	287	gaG/gaT																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2225549	2225549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	125	608	1	ENST00000326181.6:c.1552G>A	p.Gly518Ser	p.G518S	ENST00000326181	NM_032271.2	518	Ggc/Agc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3788637	3788637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	125	554	0	ENST00000262367.5:c.4317C>A	p.Phe1439Leu	p.F1439L	ENST00000262367	NM_004380.2	1439	ttC/ttA																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3808003	3808003	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	131	492	0	ENST00000262367.5:c.3416A>C	p.Lys1139Thr	p.K1139T	ENST00000262367	NM_004380.2	1139	aAg/aCg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3819355	3819355	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	83	301	0	ENST00000262367.5:c.2881-1G>A		p.X961_splice	ENST00000262367	NM_004380.2	961																																													NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858709	9858709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	141	672	2	ENST00000330684.3:c.2692C>A	p.Leu898Ile	p.L898I	ENST00000330684	NM_001134407.1	898	Ctc/Atc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934633	9934633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	116	492	0	ENST00000330684.3:c.1522G>A	p.Ala508Thr	p.A508T	ENST00000330684	NM_001134407.1	508	Gca/Aca																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23641455	23641455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	88	827	0	ENST00000261584.4:c.2020G>A	p.Asp674Asn	p.D674N	ENST00000261584	NM_024675.3	674	Gac/Aac																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56832410	56832410	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	175	859	0	ENST00000308159.5:c.320A>G	p.Asp107Gly	p.D107G	ENST00000308159	NM_014669.4	107	gAc/gGc																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56864551	56864551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	196	829	0	ENST00000308159.5:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000308159	NM_014669.4	347	Gag/Aag																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67116123	67116123	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	130	485	0	ENST00000412916.2:c.407A>G	p.Asp136Gly	p.D136G	ENST00000412916		136	gAt/gGt																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67655374	67655374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	141	644	2	ENST00000264010.4:c.1237C>T	p.His413Tyr	p.H413Y	ENST00000264010	NM_006565.3	413	Cat/Tat																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828045	72828045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	202	1194	0	ENST00000268489.5:c.8536A>G	p.Thr2846Ala	p.T2846A	ENST00000268489	NM_006885.3	2846	Aca/Gca																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831909	72831909	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	235	1062	0	ENST00000268489.5:c.4672A>C	p.Asn1558His	p.N1558H	ENST00000268489	NM_006885.3	1558	Aat/Cat																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72832394	72832394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	211	930	5	ENST00000268489.5:c.4187G>A	p.Arg1396His	p.R1396H	ENST00000268489	NM_006885.3	1396	cGc/cAc																																												NEWRECORD																																		
GPS2	0	MSKCC	GRCh37	17	7217817	7217817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1194	110	1014	0	ENST00000380728.2:c.194C>G	p.Thr65Ser	p.T65S	ENST00000380728		65	aCc/aGc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15950304	15950304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	164	784	1	ENST00000268712.3:c.6640C>T	p.Arg2214Cys	p.R2214C	ENST00000268712	NM_006311.3	2214	Cgt/Tgt																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37649073	37649073	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	130	589	0	ENST00000447079.4:c.2178G>C	p.Lys726Asn	p.K726N	ENST00000447079	NM_015083.1	726	aaG/aaC																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38506046	38506046	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	128	553	0	ENST00000254066.5:c.338G>A	p.Arg113His	p.R113H	ENST00000254066	NM_000964.3	113	cGc/cAc																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47688750	47688750	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	138	519	1	ENST00000347630.2:c.550T>C	p.Cys184Arg	p.C184R	ENST00000347630	NM_001007230.1	184	Tgc/Cgc																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696663	47696663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	159	741	1	ENST00000347630.2:c.285G>T	p.Lys95Asn	p.K95N	ENST00000347630	NM_001007230.1	95	aaG/aaT																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59763235	59763235	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	90	609	1	ENST00000259008.2:c.2867C>A	p.Ser956Ter	p.S956*	ENST00000259008	NM_032043.2	956	tCa/tAa																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59924493	59924493	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	154	734	0	ENST00000259008.2:c.596T>C	p.Leu199Pro	p.L199P	ENST00000259008	NM_032043.2	199	cTg/cCg																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	732848	732848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	146	756	2	ENST00000314574.4:c.1409G>A	p.Arg470Gln	p.R470Q	ENST00000314574	NM_005433.3	470	cGa/cAa																																												NEWRECORD																																		
GNA11	0	MSKCC	GRCh37	19	3110155	3110155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	39	351	0	ENST00000078429.4:c.145G>A	p.Glu49Lys	p.E49K	ENST00000078429	NM_002067.2	49	Gag/Aag																																												NEWRECORD																																		
GNA11	0	MSKCC	GRCh37	19	3115048	3115048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	100	581	1	ENST00000078429.4:c.583G>A	p.Asp195Asn	p.D195N	ENST00000078429	NM_002067.2	195	Gac/Aac																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5274217	5274217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	121	651	0	ENST00000357368.4:c.230G>A	p.Arg77His	p.R77H	ENST00000357368	NM_002850.3	77	cGc/cAc																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10246481	10246481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	101	449	0	ENST00000340748.4:c.4656G>T	p.Glu1552Asp	p.E1552D	ENST00000340748		1552	gaG/gaT																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11152203	11152203	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	125	567	0	ENST00000344626.4:c.4391A>C	p.Lys1464Thr	p.K1464T	ENST00000344626	NM_003072.3	1464	aAg/aCg																																												NEWRECORD																																		
DNAJB1	0	MSKCC	GRCh37	19	14626848	14626848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	184	974	0	ENST00000254322.2:c.927G>T	p.Glu309Asp	p.E309D	ENST00000254322	NM_006145.1	309	gaG/gaT																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15383651	15383651	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	117	525	0	ENST00000263377.2:c.260T>G	p.Val87Gly	p.V87G	ENST00000263377	NM_058243.2	87	gTg/gGg																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17946842	17946842	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs147408277		P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	105	655	0	ENST00000458235.1:c.1805T>C	p.Phe602Ser	p.F602S	ENST00000458235	NM_000215.3	602	tTt/tCt																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31368254	31368254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	84	442	2	ENST00000328111.2:c.125G>A	p.Arg42His	p.R42H	ENST00000328111	NM_006892.3	42	cGc/cAc																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54959350	54959350	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	82	518	0	ENST00000312783.6:c.350A>C	p.Lys117Thr	p.K117T	ENST00000312783	NM_198436.1	117	aAa/aCa																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29090065	29090065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	23	142	0	ENST00000328354.6:c.1416G>T	p.Lys472Asn	p.K472N	ENST00000328354	NM_007194.3	472	aaG/aaT																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29090088	29090088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	19	96	0	ENST00000328354.6:c.1393A>G	p.Lys465Glu	p.K465E	ENST00000328354	NM_007194.3	465	Aag/Gag																																												NEWRECORD																																		
CRLF2	0	MSKCC	GRCh37	X	1327732	1327732	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	154	743	0	ENST00000381566.1:c.149A>C	p.Lys50Thr	p.K50T	ENST00000381566		50	aAa/aCa																																												NEWRECORD																																		
ZRSR2	0	MSKCC	GRCh37	X	15841301	15841301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	142	344	0	ENST00000307771.7:c.1385G>A	p.Arg462Gln	p.R462Q	ENST00000307771	NM_005089.3	462	cGa/cAa																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39933958	39933958	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	185	437	4	ENST00000378444.4:c.641C>A	p.Ser214Ter	p.S214*	ENST00000378444	NM_001123385.1	214	tCa/tAa																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47424297	47424297	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	125	323	0	ENST00000377045.4:c.302T>G	p.Phe101Cys	p.F101C	ENST00000377045	NM_001654.4	101	tTt/tGt																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100608930	100608930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	152	408	0	ENST00000308731.7:c.1678C>A	p.Pro560Thr	p.P560T	ENST00000308731	NM_000061.2	560	Cca/Aca																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123190082	123190082	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	103	272	0	ENST00000218089.9:c.1301A>G	p.Lys434Arg	p.K434R	ENST00000218089	NM_001042749.1	434	aAa/aGa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123202447	123202447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	119	408	0	ENST00000218089.9:c.2299G>T	p.Val767Leu	p.V767L	ENST00000218089	NM_001042749.1	767	Gta/Tta																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123224539	123224539	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	206	470	1	ENST00000218089.9:c.3392G>T	p.Arg1131Ile	p.R1131I	ENST00000218089	NM_001042749.1	1131	aGa/aTa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177434	112177435	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	64	582	2	ENST00000257430.4:c.6149dupA	p.Lys2051GlufsTer9	p.K2051Efs*9	ENST00000257430	NM_000038.5	2048	cca/ccAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	145	298	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0008012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	89	171	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12645693	12645693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	110	255	0	ENST00000251849.4:c.776C>T	p.Ser259Phe	p.S259F	ENST00000251849	NM_002880.3	259	tCc/tTc																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123325179	123325179	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	92	297	0	ENST00000358487.5:c.149A>T	p.Tyr50Phe	p.Y50F	ENST00000358487	NM_000141.4	50	tAc/tTc																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95557643	95557643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	151	345	0	ENST00000343455.3:c.5424G>T	p.Met1808Ile	p.M1808I	ENST00000343455	NM_177438.2	1808	atG/atT																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3781222	3781222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	173	307	0	ENST00000262367.5:c.5143G>A	p.Glu1715Lys	p.E1715K	ENST00000262367	NM_004380.2	1715	Gag/Aag																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11094940	11094940	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	111	447	0	ENST00000344626.4:c.113C>G	p.Ser38Cys	p.S38C	ENST00000344626	NM_003072.3	38	tCc/tGc																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9543543	9543543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	120	401	0	ENST00000353224.5:c.1611C>G	p.His537Gln	p.H537Q	ENST00000353224	NM_177990.2	537	caC/caG																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47040763	47040764	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCAG			P-0008012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	126	416	0	ENST00000329236.7:c.1165_1166insCAGG	p.Gly389AlafsTer52	p.G389Afs*52	ENST00000329236	NM_001204466.1	388	-/GCAG																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206651679	206651679	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			112	684	393	0	ENST00000367120.3:c.989A>G	p.Asn330Ser	p.N330S	ENST00000367120	NM_014002.3	330	aAc/aGc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612124	189612124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			3903	933	608	1	ENST00000264731.3:c.1876G>T	p.Val626Phe	p.V626F	ENST00000264731	NM_003722.4	626	Gtc/Ttc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32172139	32172139	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			721	40	498	0	ENST00000375023.3:c.2893T>A	p.Cys965Ser	p.C965S	ENST00000375023	NM_004557.3	965	Tgc/Agc																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123325164	123325164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1252	161	502	0	ENST00000358487.5:c.164G>A	p.Gly55Glu	p.G55E	ENST00000358487	NM_000141.4	55	gGg/gAg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29001978	29001978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	204	520	0	ENST00000282397.4:c.1187C>G	p.Thr396Ser	p.T396S	ENST00000282397	NM_002019.4	396	aCt/aGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	1218	600	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29528073	29528073	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	109	197	0	ENST00000358273.4:c.1081A>T	p.Ser361Cys	p.S361C	ENST00000358273	NM_001042492.2	361	Agt/Tgt																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610359	10610359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	706	558	0	ENST00000171111.5:c.351G>T	p.Glu117Asp	p.E117D	ENST00000171111	NM_203500.1	117	gaG/gaT																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48650778	48650778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	798	344	1	ENST00000376670.3:c.647G>A	p.Arg216Gln	p.R216Q	ENST00000376670	NM_002049.3	216	cGg/cAg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49440430	49440431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	516	455	0	ENST00000301067.7:c.4379dupC	p.Leu1461ThrfsTer30	p.L1461Tfs*30	ENST00000301067	NM_003482.3	1460	cca/ccCa																																												NEWRECORD																																		
FGF19	0	MSKCC	GRCh37	11	69518477	69518478	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0001622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	247	303	0	ENST00000294312.3:c.167_168delinsAA	p.Ser56Ter	p.S56*	ENST00000294312	NM_005117.2	56	tCC/tAA																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	8	124	0	ENST00000358487.5:c.755C>T	p.Ser252Leu	p.S252L	ENST00000358487	NM_000141.4	252	tCg/tTg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115883	8115884	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	322	354	0	ENST00000346208.3:c.1231dup	p.His411ProfsTer96	p.H411Pfs*96	ENST00000346208		410	agc/agCc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142278102	142278102	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000271-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	403	272	0	ENST00000350721.4:c.1723T>C	p.Tyr575His	p.Y575H	ENST00000350721	NM_001184.3	575	Tat/Cat																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720808	89720808	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000271-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	194	89	0	ENST00000371953.3:c.959T>C	p.Leu320Ser	p.L320S	ENST00000371953	NM_000314.4	320	tTa/tCa																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148508773	148508774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000271-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	61	254	0	ENST00000320356.2:c.1890dupG	p.Ile631AspfsTer11	p.I631Dfs*11	ENST00000320356	NM_004456.4	630	-/G																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76889072	76889073	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0000271-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	534	334	0	ENST00000373344.5:c.4937_4938delAA	p.Lys1646ArgfsTer2	p.K1646Rfs*2	ENST00000373344	NM_000489.3	1646	aAA/a																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	48	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	44	704	1	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604768	48604768	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	68	556	0	ENST00000342988.3:c.1591del	p.Arg531GlyfsTer6	p.R531Gfs*6	ENST00000342988	NM_005359.5	530	caC/ca																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23641718	23641724	+	protein_altering_variant	In_Frame_Del	DEL	TCATCAT	TCATCAT	C			P-0012972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	65	538	0	ENST00000261584.4:c.1751_1757delinsG	p.Asp584_Asp586delinsGly	p.D584_D586delinsG	ENST00000261584	NM_024675.3	584	gATGATGAt/gGt																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602390	10602391	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0004708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	87	893	0	ENST00000171111.5:c.1187dup	p.Tyr396Ter	p.Y396*	ENST00000171111	NM_203500.1	396	tac/taAc																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	43	156	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	97	227	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	108	250	1	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	30	78	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70441157	70441157	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	134	312	0	ENST00000373644.4:c.4832delA	p.Asn1611ThrfsTer13	p.N1611Tfs*13	ENST00000373644	NM_030625.2	1609	gAa/ga																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	76	216	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																												NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69625281	69625281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35983315		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	62	359	1	ENST00000334134.2:c.512G>A	p.Arg171His	p.R171H	ENST00000334134	NM_005247.2	171	cGc/cAc																																												NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69625080	69625080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	18	130	0	ENST00000334134.2:c.713C>T	p.Ala238Val	p.A238V	ENST00000334134	NM_005247.2	238	gCg/gTg																																												NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	122	623	6	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94203691	94203691	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	125	277	2	ENST00000323929.3:c.963del	p.Phe321LeufsTer8	p.F321Lfs*8	ENST00000323929	NM_005591.3	321	ttT/tt																																												NEWRECORD																																		
ID3	0	MSKCC	GRCh37	1	23885643	23885643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	131	477	0	ENST00000374561.5:c.275C>A	p.Pro92His	p.P92H	ENST00000374561	NM_002167.4	92	cCt/cAt																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72076815	72076815	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	123	247	1	ENST00000357731.5:c.682C>G	p.Gln228Glu	p.Q228E	ENST00000357731	NM_173808.2	228	Cag/Gag																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111907683	111907683	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146318804		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	77	239	0	ENST00000393256.3:c.457C>T	p.Arg153Trp	p.R153W	ENST00000393256	NM_006538.4	153	Cgg/Tgg																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	47	152	0	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49932614	49932614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	94	365	0	ENST00000296474.3:c.3257G>A	p.Arg1086Gln	p.R1086Q	ENST00000296474	NM_002447.2	1086	cGa/cAa																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49940468	49940468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	134	526	0	ENST00000296474.3:c.575G>A	p.Gly192Asp	p.G192D	ENST00000296474	NM_002447.2	192	gGc/gAc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436857	52436857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	81	320	0	ENST00000460680.1:c.1921G>A	p.Ala641Thr	p.A641T	ENST00000460680	NM_004656.3	641	Gct/Act																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128200768	128200768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	55	198	0	ENST00000341105.2:c.1037G>T	p.Gly346Val	p.G346V	ENST00000341105	NM_032638.4	346	gGc/gTc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134880887	134880887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	86	262	0	ENST00000398015.3:c.1450G>A	p.Ala484Thr	p.A484T	ENST00000398015	NM_004441.4	484	Gcc/Acc																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106196328	106196328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	125	284	0	ENST00000380013.4:c.4661C>T	p.Thr1554Ile	p.T1554I	ENST00000380013	NM_001127208.2	1554	aCa/aTa																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106197190	106197190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	65	139	0	ENST00000380013.4:c.5523G>T	p.Glu1841Asp	p.E1841D	ENST00000380013	NM_001127208.2	1841	gaG/gaT																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187524899	187524899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	92	295	1	ENST00000441802.2:c.10781G>A	p.Ser3594Asn	p.S3594N	ENST00000441802	NM_005245.3	3594	aGc/aAc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67575474	67575474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	103	198	0	ENST00000274335.5:c.547G>A	p.Ala183Thr	p.A183T	ENST00000274335		183	Gct/Act																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67593343	67593343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	121	313	0	ENST00000274335.5:c.2089C>T	p.His697Tyr	p.H697Y	ENST00000274335		697	Cat/Tat																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149449546	149449546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	75	330	0	ENST00000286301.3:c.1400C>T	p.Thr467Met	p.T467M	ENST00000286301	NM_005211.3	467	aCg/aTg																																												NEWRECORD																																		
HIST1H3F	0	MSKCC	GRCh37	6	26250724	26250724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	158	442	0	ENST00000446824.2:c.110A>G	p.Lys37Arg	p.K37R	ENST00000446824	NM_021018.2	37	aAg/aGg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32166285	32166285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	81	211	0	ENST00000375023.3:c.4669G>A	p.Gly1557Ser	p.G1557S	ENST00000375023	NM_004557.3	1557	Ggc/Agc																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162394349	162394349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	95	236	0	ENST00000366898.1:c.719C>T	p.Thr240Met	p.T240M	ENST00000366898	NM_004562.2	240	aCg/aTg																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50468150	50468150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	73	171	0	ENST00000331340.3:c.1385A>G	p.Tyr462Cys	p.Y462C	ENST00000331340	NM_006060.4	462	tAc/tGc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106513046	106513046	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	63	164	0	ENST00000359195.3:c.2060G>A	p.Arg687Lys	p.R687K	ENST00000359195	NM_002649.2	687	aGa/aAa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139396823	139396823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	56	242	0	ENST00000277541.6:c.5285G>A	p.Arg1762Gln	p.R1762Q	ENST00000277541	NM_017617.3	1762	cGg/cAg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333182	70333182	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	83	327	0	ENST00000373644.4:c.1087T>G	p.Ser363Ala	p.S363A	ENST00000373644	NM_030625.2	363	Tct/Gct																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741573	17741573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	54	129	1	ENST00000250003.3:c.244C>T	p.Arg82Cys	p.R82C	ENST00000250003	NM_002478.4	82	Cgc/Tgc																																												NEWRECORD																																		
RPS6KB2	0	MSKCC	GRCh37	11	67200841	67200841	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	69	303	0	ENST00000312629.5:c.829A>C	p.Thr277Pro	p.T277P	ENST00000312629	NM_003952.2	277	Acc/Ccc																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50484049	50484049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	77	226	0	ENST00000394963.4:c.899G>A	p.Arg300His	p.R300H	ENST00000394963	NM_003076.4	300	cGc/cAc																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95590990	95590990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	59	119	0	ENST00000343455.3:c.919C>T	p.Arg307Cys	p.R307C	ENST00000343455	NM_177438.2	307	Cgt/Tgt																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23641679	23641679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	92	264	0	ENST00000261584.4:c.1796G>A	p.Ser599Asn	p.S599N	ENST00000261584	NM_024675.3	599	aGt/aAt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72984704	72984704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	145	543	0	ENST00000268489.5:c.2880G>A	p.Met960Ile	p.M960I	ENST00000268489	NM_006885.3	960	atG/atA																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29533279	29533279	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	92	232	0	ENST00000358273.4:c.1282A>G	p.Lys428Glu	p.K428E	ENST00000358273	NM_001042492.2	428	Aag/Gag																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56448270	56448270	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	48	98	0	ENST00000407977.2:c.375+2T>C		p.X125_splice	ENST00000407977		125																																													NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2213969	2213969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	36	102	0	ENST00000398665.3:c.1781G>A	p.Gly594Asp	p.G594D	ENST00000398665	NM_032482.2	594	gGc/gAc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5222993	5222993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	20	136	0	ENST00000357368.4:c.2810C>T	p.Ala937Val	p.A937V	ENST00000357368	NM_002850.3	937	gCg/gTg																																												NEWRECORD																																		
INSR	3643	MSKCC	GRCh37	19	7172331	7172331	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758151117		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	99	330	0	ENST00000302850.5:c.1238G>A	p.Arg413His	p.R413H	ENST00000302850	NM_000208.2	413	cGt/cAt																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15281250	15281250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	42	231	0	ENST00000263388.2:c.5006G>A	p.Arg1669His	p.R1669H	ENST00000263388	NM_000435.2	1669	cGc/cAc																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39721126	39721126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	95	211	0	ENST00000361337.2:c.629G>A	p.Arg210His	p.R210H	ENST00000361337	NM_003286.2	210	cGc/cAc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36231788	36231788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	72	203	0	ENST00000300305.3:c.596G>T	p.Gly199Val	p.G199V	ENST00000300305		199	gGg/gTg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41551089	41551089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	90	486	0	ENST00000263253.7:c.3233C>A	p.Pro1078His	p.P1078H	ENST00000263253	NM_001429.3	1078	cCt/cAt																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766451	66766451	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			29	40	79	0	ENST00000374690.3:c.1463A>G	p.Gln488Arg	p.Q488R	ENST00000374690	NM_000044.3	488	cAg/cGg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151917717	151917717	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	19	80	0	ENST00000262189.6:c.3603delA	p.Lys1201AsnfsTer4	p.K1201Nfs*4	ENST00000262189	NM_170606.2	1201	aaA/aa																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42798220	42798222	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	38	284	0	ENST00000575354.2:c.4178_4180del	p.Lys1393del	p.K1393del	ENST00000575354	NM_015125.3	1392	AAG/-																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831385	72831386	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGTTGTTGC			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	39	321	0	ENST00000268489.5:c.5195_5196insGCAACAACA	p.Gln1739_Gln1741dup	p.Q1739_Q1741dup	ENST00000268489	NM_006885.3	1739	caa/caGCAACAACAa																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	58	197	0	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																												NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72821959	72821960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs762108866		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	48	248	1	ENST00000268489.5:c.10215dup	p.Gly3406ArgfsTer25	p.G3406Rfs*25	ENST00000268489	NM_006885.3	3405	-/C																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47424734	47424734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	106	229	0	ENST00000377045.4:c.547delC	p.Gln183ArgfsTer109	p.Q183Rfs*109	ENST00000377045	NM_001654.4	181	aCc/ac																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209116263	209116263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	135	305	0	ENST00000345146.2:c.13delA	p.Ile5SerfsTer7	p.I5Sfs*7	ENST00000345146	NM_005896.2	5	Atc/tc																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99172203	99172203	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	83	344	0	ENST00000074304.5:c.1769del	p.Cys590LeufsTer21	p.C590Lfs*21	ENST00000074304	NM_001134224.1	590	tGt/tt																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42798164	42798164	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	61	339	0	ENST00000575354.2:c.4122delC	p.Thr1375ProfsTer40	p.T1375Pfs*40	ENST00000575354	NM_015125.3	1373	tCc/tc																																												NEWRECORD																																		
AXIN1	8312	MSKCC	GRCh37	16	347983	347983	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs760961378		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	48	275	4	ENST00000262320.3:c.1523del	p.Gly508ValfsTer197	p.G508Vfs*197	ENST00000262320	NM_003502.3	508	gGt/gt																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	106	225	4	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																												NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	109	299	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	348211	348211	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	46	116	0	ENST00000262320.3:c.1295del	p.Pro432GlnfsTer48	p.P432Qfs*48	ENST00000262320	NM_003502.3	432	cCa/ca																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135781141	135781141	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	152	678	2	ENST00000298552.3:c.1824del	p.Phe608LeufsTer21	p.F608Lfs*21	ENST00000298552	NM_001162426.1	608	ttT/tt																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	78	162	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																												NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	198	611	3	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																												NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135785964	135785964	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs118203506		P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	36	139	2	ENST00000298552.3:c.1257del	p.Arg420GlyfsTer20	p.R420Gfs*20	ENST00000298552	NM_001162426.1	419	ccC/cc																																												NEWRECORD																																		
NOTCH2	4853	MSKCC	GRCh37	1	120483185	120483185	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	62	127	0	ENST00000256646.2:c.3176del	p.Asn1059ThrfsTer6	p.N1059Tfs*6	ENST00000256646	NM_024408.3	1059	aAc/ac																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138202374	138202374	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	25	147	0	ENST00000237289.4:c.2295del	p.Ala766ProfsTer50	p.A766Pfs*50	ENST00000237289	NM_001270507.1	764	gCc/gc																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	161781121	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	28	226	0	ENST00000366898.1:c.1283dup	p.Asn428LysfsTer141	p.N428Kfs*141	ENST00000366898	NM_004562.2	428	aat/aaAt																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41245587	41245587	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	92	338	1	ENST00000357654.3:c.1961delA	p.Lys654SerfsTer47	p.K654Sfs*47	ENST00000357654	NM_007294.3	654	aAg/ag																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39934301	39934302	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0004051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	125	201	1	ENST00000378444.4:c.297_298del	p.Lys100ArgfsTer85	p.K100Rfs*85	ENST00000378444	NM_001123385.1	99	gaGAaa/gaaa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099906	27099906	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140125151		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	226	556	0	ENST00000324856.7:c.3785G>A	p.Arg1262His	p.R1262H	ENST00000324856	NM_006015.4	1262	cGt/cAt																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	341	594	0	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65306942	65306942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	160	375	0	ENST00000342505.4:c.2635C>T	p.Arg879Cys	p.R879C	ENST00000342505	NM_002227.2	879	Cgt/Tgt																																												NEWRECORD																																		
CSDE1	0	MSKCC	GRCh37	1	115269621	115269622	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	295	878	0	ENST00000438362.2:c.1584_1585del	p.Pro529SerfsTer5	p.P529Sfs*5	ENST00000438362	NM_001242891.1	528	tcTCct/tcct																																												NEWRECORD																																		
SHOC2	0	MSKCC	GRCh37	10	112724269	112724269	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			883	302	632	0	ENST00000369452.4:c.153A>C	p.Lys51Asn	p.K51N	ENST00000369452	NM_007373.3	51	aaA/aaC																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94189472	94189473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	195	462	0	ENST00000323929.3:c.1532dup	p.Asn511LysfsTer3	p.N511Kfs*3	ENST00000323929	NM_005591.3	511	aat/aaAt																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18644452	18644452	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	216	483	0	ENST00000266497.5:c.2630C>A	p.Pro877His	p.P877H	ENST00000266497		877	cCt/cAt																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	255	691	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115117323	115117323	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	168	348	0	ENST00000257566.3:c.851A>G	p.Tyr284Cys	p.Y284C	ENST00000257566	NM_016569.3	284	tAc/tGc																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103519115	103519115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	242	487	0	ENST00000355739.4:c.2453C>T	p.Ala818Val	p.A818V	ENST00000355739	NM_000123.3	818	gCg/gTg																																												NEWRECORD																																		
KNSTRN	0	MSKCC	GRCh37	15	40678619	40678619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1149	205	665	2	ENST00000249776.8:c.361G>A	p.Asp121Asn	p.D121N	ENST00000249776	NM_033286.3	121	Gat/Aat																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	162	413	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	179	411	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91293075	91293075	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	226	494	0	ENST00000355112.3:c.582del	p.Phe194LeufsTer11	p.F194Lfs*11	ENST00000355112	NM_000057.2	193	Ttt/tt																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2127688	2127688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	220	585	0	ENST00000219476.3:c.2927G>A	p.Arg976Gln	p.R976Q	ENST00000219476	NM_000548.3	976	cGg/cAg																																												NEWRECORD																																		
SOCS1	0	MSKCC	GRCh37	16	11349070	11349070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	154	421	1	ENST00000332029.2:c.266C>T	p.Ala89Val	p.A89V	ENST00000332029	NM_003745.1	89	gCg/gTg																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	416	567	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
PRKAR1A	0	MSKCC	GRCh37	17	66526531	66526531	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	202	440	0	ENST00000358598.2:c.1087T>G	p.Ser363Ala	p.S363A	ENST00000358598	NM_212471.2	363	Tca/Gca																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	134	334	1	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	165	493	0	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5244196	5244196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	193	547	2	ENST00000357368.4:c.1286C>T	p.Ala429Val	p.A429V	ENST00000357368	NM_002850.3	429	gCg/gTg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7267448	7267448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	225	464	0	ENST00000302850.5:c.560C>T	p.Pro187Leu	p.P187L	ENST00000302850	NM_000208.2	187	cCg/cTg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11097228	11097228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201600949		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	258	618	2	ENST00000344626.4:c.719C>T	p.Pro240Leu	p.P240L	ENST00000344626	NM_003072.3	240	cCg/cTg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15284889	15284889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	286	747	0	ENST00000263388.2:c.4726G>A	p.Glu1576Lys	p.E1576K	ENST00000263388	NM_000435.2	1576	Gag/Aag																																												NEWRECORD																																		
CCNE1	0	MSKCC	GRCh37	19	30314680	30314680	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141578348		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	158	511	0	ENST00000262643.3:c.1229C>T	p.Ala410Val	p.A410V	ENST00000262643	NM_001238.2	410	gCg/gTg																																												NEWRECORD																																		
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1017	269	765	1	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga																																												NEWRECORD																																		
ERF	0	MSKCC	GRCh37	19	42753385	42753385	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	223	682	2	ENST00000222329.4:c.879delG	p.Ser295AlafsTer16	p.S295Afs*16	ENST00000222329	NM_006494.2	293	ggG/gg																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50906369	50906369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			872	244	649	0	ENST00000440232.2:c.1030T>C	p.Trp344Arg	p.W344R	ENST00000440232	NM_002691.3	344	Tgg/Cgg																																												NEWRECORD																																		
SOS1	0	MSKCC	GRCh37	2	39250095	39250095	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	230	562	0	ENST00000402219.2:c.1474G>T	p.Glu492Ter	p.E492*	ENST00000402219	NM_005633.3	492	Gaa/Taa																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	398	499	2	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202141631	202141631	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	226	526	0	ENST00000358485.4:c.919del	p.Arg307GlyfsTer23	p.R307Gfs*23	ENST00000358485	NM_001080125.1	307	Cgg/gg																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225362470	225362470	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	118	312	0	ENST00000264414.4:c.1707G>T	p.Lys569Asn	p.K569N	ENST00000264414	NM_003590.4	569	aaG/aaT																																												NEWRECORD																																		
BCL2L1	0	MSKCC	GRCh37	20	30309535	30309535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	291	649	0	ENST00000307677.4:c.487G>T	p.Val163Leu	p.V163L	ENST00000307677	NM_138578.1	163	Gtg/Ttg																																												NEWRECORD																																		
SRC	0	MSKCC	GRCh37	20	36030877	36030877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	187	535	0	ENST00000358208.4:c.1156G>A	p.Val386Ile	p.V386I	ENST00000358208		386	Gtc/Atc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40899050	40899050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	144	487	0	ENST00000373198.4:c.2220C>G	p.Cys740Trp	p.C740W	ENST00000373198	NM_133170.3	740	tgC/tgG																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	20	446	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39764347	39764347	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			936	235	584	0	ENST00000288319.7:c.765del	p.Arg256GlyfsTer35	p.R256Gfs*35	ENST00000288319	NM_182918.3	255	ccC/cc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52682360	52682360	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	144	268	0	ENST00000394830.3:c.813G>T	p.Lys271Asn	p.K271N	ENST00000394830	NM_018313.4	271	aaG/aaT																																												NEWRECORD																																		
FOXL2	0	MSKCC	GRCh37	3	138665215	138665215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1031	354	864	1	ENST00000330315.3:c.350G>A	p.Arg117His	p.R117H	ENST00000330315	NM_023067.3	117	cGc/cAc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142188303	142188304	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	192	527	0	ENST00000350721.4:c.6427dup	p.Ser2143PhefsTer13	p.S2143Ffs*13	ENST00000350721	NM_001184.3	2143	tca/tTca																																												NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187447297	187447297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	193	571	0	ENST00000232014.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000232014	NM_001130845.1	299	gCc/gTc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187521103	187521103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183364307		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	149	384	0	ENST00000441802.2:c.12052G>A	p.Ala4018Thr	p.A4018T	ENST00000441802	NM_005245.3	4018	Gcc/Acc																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176638776	176638776	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	248	612	0	ENST00000439151.2:c.3376G>C	p.Gly1126Arg	p.G1126R	ENST00000439151	NM_022455.4	1126	Gga/Cga																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29911051	29911051	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	250	541	0	ENST00000376809.5:c.350A>G	p.His117Arg	p.H117R	ENST00000376809	NM_002116.7	117	cAc/cGc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117677848	117677848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	152	389	2	ENST00000368508.3:c.4085C>A	p.Ala1362Glu	p.A1362E	ENST00000368508	NM_002944.2	1362	gCa/gAa																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150005002	150005002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	138	340	0	ENST00000253339.5:c.1223C>T	p.Ser408Phe	p.S408F	ENST00000253339		408	tCt/tTt																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			787	229	514	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
AGO2	27161	MSKCC	GRCh37	8	141554344	141554345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs748399150		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	290	850	4	ENST00000220592.5:c.1806dup	p.Ala603ArgfsTer71	p.A603Rfs*71	ENST00000220592	NM_012154.3	602	-/C																																												NEWRECORD																																		
AGO2	0	MSKCC	GRCh37	8	141559350	141559350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	256	511	0	ENST00000220592.5:c.1451C>T	p.Pro484Leu	p.P484L	ENST00000220592	NM_012154.3	484	cCc/cTc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	146	397	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																													NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	146	397	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																													NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			523	146	397	0	ENST00000304494.5:c.151-1G>T		p.X51_splice	ENST00000304494	NM_000077.4	51																																													NEWRECORD																																		
MAPKAP1	79109	MSKCC	GRCh37	9	128420047	128420047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			982	244	649	4	ENST00000265960.3:c.381del	p.Lys127AsnfsTer20	p.K127Nfs*20	ENST00000265960	NM_001006617.1	127	aaA/aa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139404341	139404341	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35962301		P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	283	692	0	ENST00000277541.6:c.2813G>A	p.Arg938Gln	p.R938Q	ENST00000277541	NM_017617.3	938	cGg/cAg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045514	47045514	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	232	685	0	ENST00000329236.7:c.2250del	p.Glu751SerfsTer18	p.E751Sfs*18	ENST00000329236	NM_001204466.1	749	atC/at																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100617180	100617180	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014787-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	254	606	0	ENST00000308731.7:c.569del	p.Pro190GlnfsTer9	p.P190Qfs*9	ENST00000308731	NM_000061.2	190	cCa/ca																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	47	140	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	69	143	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56492608	56492608	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	170	333	0	ENST00000267101.3:c.2758G>C	p.Val920Leu	p.V920L	ENST00000267101	NM_001982.3	920	Gta/Cta																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150005408	150005408	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	147	419	0	ENST00000253339.5:c.817C>G	p.Gln273Glu	p.Q273E	ENST00000253339		273	Caa/Gaa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099397	27099397	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	143	347	0	ENST00000324856.7:c.3634C>G	p.Gln1212Glu	p.Q1212E	ENST00000324856	NM_006015.4	1212	Cag/Gag																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78430359	78430359	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	177	337	0	ENST00000370768.2:c.809C>G	p.Ser270Ter	p.S270*	ENST00000370768	NM_003902.3	270	tCa/tGa																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30715624	30715624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	126	336	0	ENST00000359013.4:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000359013	NM_001024847.2	453	Gaa/Aaa																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41275717	41275717	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	189	322	0	ENST00000349496.5:c.1612C>A	p.Gln538Lys	p.Q538K	ENST00000349496	NM_001904.3	538	Cag/Aag																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134670652	134670652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	102	395	0	ENST00000398015.3:c.563C>A	p.Ser188Tyr	p.S188Y	ENST00000398015	NM_004441.4	188	tCt/tAt																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189526197	189526197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	230	351	0	ENST00000264731.3:c.461C>G	p.Ser154Cys	p.S154C	ENST00000264731	NM_003722.4	154	tCc/tGc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1807335	1807335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	207	423	0	ENST00000260795.2:c.1584G>A	p.Met528Ile	p.M528I	ENST00000260795		528	atG/atA																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187535364	187535364	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	129	290	0	ENST00000441802.2:c.9210C>G	p.Phe3070Leu	p.F3070L	ENST00000441802	NM_005245.3	3070	ttC/ttG																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	226031	226031	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	28	56	0	ENST00000264932.6:c.490G>C	p.Glu164Gln	p.E164Q	ENST00000264932	NM_004168.2	164	Gaa/Caa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56180536	56180536	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	146	315	0	ENST00000399503.3:c.3865G>C	p.Glu1289Gln	p.E1289Q	ENST00000399503	NM_005921.1	1289	Gaa/Caa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8376078	8376078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	85	232	0	ENST00000356435.5:c.4519G>C	p.Glu1507Gln	p.E1507Q	ENST00000356435		1507	Gag/Cag																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123260391	123260391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	155	351	0	ENST00000358487.5:c.1510G>C	p.Asp504His	p.D504H	ENST00000358487	NM_000141.4	504	Gac/Cac																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108121609	108121609	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	201	379	0	ENST00000278616.4:c.1417G>C	p.Glu473Gln	p.E473Q	ENST00000278616	NM_000051.3	473	Gaa/Caa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431006	49431006	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	138	371	1	ENST00000301067.7:c.10133C>A	p.Ser3378Ter	p.S3378*	ENST00000301067	NM_003482.3	3378	tCa/tAa																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95562371	95562371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	140	265	0	ENST00000343455.3:c.4886C>T	p.Ser1629Leu	p.S1629L	ENST00000343455	NM_177438.2	1629	tCa/tTa																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11169561	11169561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	76	296	0	ENST00000344626.4:c.4631C>T	p.Ser1544Phe	p.S1544F	ENST00000344626	NM_003072.3	1544	tCc/tTc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44894174	44894174	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	228	447	0	ENST00000377967.4:c.565-2A>C		p.X189_splice	ENST00000377967	NM_021140.2	189																																													NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47038519	47038519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	119	391	0	ENST00000329236.7:c.450C>G	p.Phe150Leu	p.F150L	ENST00000329236	NM_001204466.1	150	ttC/ttG																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039429	47039429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	120	358	0	ENST00000329236.7:c.821C>T	p.Ser274Phe	p.S274F	ENST00000329236	NM_001204466.1	274	tCc/tTc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766006	66766006	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	175	423	0	ENST00000374690.3:c.1018G>C	p.Glu340Gln	p.E340Q	ENST00000374690	NM_000044.3	340	Gaa/Caa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44918509	44918509	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	341	447	0	ENST00000377967.4:c.995del	p.Asn332IlefsTer27	p.N332Ifs*27	ENST00000377967	NM_021140.2	331	cAa/ca																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123179025	123179025	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	173	364	0	ENST00000218089.9:c.475del	p.Tyr159IlefsTer24	p.Y159Ifs*24	ENST00000218089	NM_001042749.1	158	gaT/ga																																												NEWRECORD																																		
CDKN1A	1026	MSKCC	GRCh37	6	36652225	36652226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	163	292	0	ENST00000244741.5:c.349dup	p.Cys117LeufsTer12	p.C117Lfs*12	ENST00000244741	NM_000389.4	116	tct/tcTt																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36651885	36651886	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	193	243	0	ENST00000244741.5:c.9dup	p.Pro4ThrfsTer32	p.P4Tfs*32	ENST00000244741	NM_000389.4	3	gaa/gAaa																																												NEWRECORD																																		
IL10	0	MSKCC	GRCh37	1	206942006	206942006	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	30	368	0	ENST00000423557.1:c.512A>T	p.Tyr171Phe	p.Y171F	ENST00000423557	NM_000572.2	171	tAc/tTc																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50905288	50905288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	85	731	0	ENST00000440232.2:c.496C>T	p.Arg166Trp	p.R166W	ENST00000440232	NM_002691.3	166	Cgg/Tgg																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627344	37627347	+	frameshift_variant	Frame_Shift_Del	DEL	CCAA	CCAA	-			P-0009843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	73	510	1	ENST00000447079.4:c.1259_1262del	p.Ser420TrpfsTer15	p.S420Wfs*15	ENST00000447079	NM_015083.1	420	tCCAAg/tg																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061215	38061227	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCCGTTCTCG	GCAGCCGTTCTCG	-			P-0009843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	241	329	0	ENST00000250448.2:c.762_774del	p.Glu255ThrfsTer62	p.E255Tfs*62	ENST00000250448	NM_004496.3	254	ttCGAGAACGGCTGC/tt																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37650871	37650871	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	43	470	1	ENST00000447079.4:c.2344del	p.Ile782SerfsTer8	p.I782Sfs*8	ENST00000447079	NM_015083.1	781	ttA/tt																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934559	9934560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	19	455	0	ENST00000330684.3:c.1595dup	p.Ile533AsnfsTer9	p.I533Nfs*9	ENST00000330684	NM_001134407.1	532	gga/ggGa																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100611137	100611137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010254-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			582	39	846	0	ENST00000308731.7:c.1469G>A	p.Arg490His	p.R490H	ENST00000308731	NM_000061.2	490	cGc/cAc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55144148	55144148	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	72	616	0	ENST00000257290.5:c.1977C>G	p.Asn659Lys	p.N659K	ENST00000257290	NM_006206.4	659	aaC/aaG																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47641544	47641544	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	13	326	0	ENST00000233146.2:c.929T>G	p.Leu310Arg	p.L310R	ENST00000233146	NM_000251.2	310	cTt/cGt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72992630	72992630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	15	387	0	ENST00000268489.5:c.1415C>A	p.Ala472Glu	p.A472E	ENST00000268489	NM_006885.3	472	gCg/gAg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2112561	2112561	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	95	739	0	ENST00000219476.3:c.1321T>A	p.Trp441Arg	p.W441R	ENST00000219476	NM_000548.3	441	Tgg/Agg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78857678	78857678	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	128	657	0	ENST00000306801.3:c.1748G>C	p.Arg583Thr	p.R583T	ENST00000306801	NM_020761.2	583	aGg/aCg																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55141111	55141112	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAGTTTCCAAGAGATGGACTAGTGCTTGAGAT			P-0014411-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	48	363	0	ENST00000257290.5:c.1786_1786+1insAGATGGAGTTTCCAAGAGATGGACTAGTGCTTG	p.Leu595_Gly596insGluMetGluPheProArgAspGlyLeuValLeu	p.L595_G596insEMEFPRDGLVL	ENST00000257290	NM_006206.4	586	tgg/tgGGAGTTTCCAAGAGATGGACTAGTGCTTGAGATg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	132	559	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	21	471	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108186775	108186776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCTAGTAACATATGA			P-0004113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	74	682	0	ENST00000278616.4:c.6136_6151dup	p.Leu2051ProfsTer5	p.L2051Pfs*5	ENST00000278616	NM_000051.3	2045	gcc/gCCCTAGTAACATATGAcc																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	105	406	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30143035	30143035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	118	506	2	ENST00000389048.3:c.491G>A	p.Gly164Glu	p.G164E	ENST00000389048	NM_004304.4	164	gGg/gAg																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98220303	98220303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	110	316	1	ENST00000331920.6:c.3160G>A	p.Gly1054Arg	p.G1054R	ENST00000331920	NM_000264.3	1054	Ggg/Agg																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12037475	12037475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	154	318	0	ENST00000396373.4:c.1106G>A	p.Arg369Gln	p.R369Q	ENST00000396373	NM_001987.4	369	cGg/cAg																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37883138	37883138	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3049	10073	552	2	ENST00000269571.5:c.3041T>A	p.Met1014Lys	p.M1014K	ENST00000269571		1014	aTg/aAg																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29083947	29083947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	35	87	0	ENST00000328354.6:c.1570G>A	p.Glu524Lys	p.E524K	ENST00000328354	NM_007194.3	524	Gaa/Aaa																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41545115	41545115	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1286	221	511	0	ENST00000263253.7:c.2315C>A	p.Ser772Ter	p.S772*	ENST00000263253	NM_001429.3	772	tCa/tAa																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70345893	70345893	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	193	202	0	ENST00000374080.3:c.2430G>C	p.Glu810Asp	p.E810D	ENST00000374080		810	gaG/gaC																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576923	7576955	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAA	AGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAA	-			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	263	403	0	ENST00000269305.4:c.920-29_923del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																													NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119562123	119562124	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	205	457	0	ENST00000316626.5:c.1212dup	p.Thr405HisfsTer10	p.T405Hfs*10	ENST00000316626		404	-/C																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55242444	55242445	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAAATTCCCGTCGCTATC			P-0012745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	463	344	0	ENST00000275493.2:c.2217_2234dup	p.Ile740_Lys745dup	p.I740_K745dup	ENST00000275493	NM_005228.3	740	-/AAAATTCCCGTCGCTATC																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183791	10183792	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	ATA			P-0005593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	37	319	0	ENST00000256474.2:c.262_263insAAT	p.Val87_Trp88insTer	p.V87_W88ins*	ENST00000256474	NM_000551.3	87	gta/gtATAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	20	716	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	17	361	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81386537	81386537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	23	654	0	ENST00000222390.5:c.450G>T	p.Gln150His	p.Q150H	ENST00000222390	NM_000601.4	150	caG/caT																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	24	380	0	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga																																												NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	18	452	0	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12653513	12653513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	22	593	0	ENST00000251849.4:c.256C>T	p.Leu86Phe	p.L86F	ENST00000251849	NM_002880.3	86	Ctc/Ttc																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114710517	114710517	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	84	734	0	ENST00000543371.1:c.2T>G	p.Met1?	p.M1?	ENST00000543371	NM_001198531.1	1	aTg/aGg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173574	112173575	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	15	456	0	ENST00000257430.4:c.2284dup	p.Ala762GlyfsTer13	p.A762Gfs*13	ENST00000257430	NM_000038.5	761	-/G																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604762	48604763	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	38	584	0	ENST00000342988.3:c.1586dup	p.Leu529PhefsTer48	p.L529Ffs*48	ENST00000342988	NM_005359.5	528	-/T																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	137	384	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	71	367	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	70	253	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	43	322	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1264568	1264568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	48	440	0	ENST00000310581.5:c.2794G>A	p.Gly932Ser	p.G932S	ENST00000310581	NM_198253.2	932	Ggc/Agc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174840	112174840	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	96	438	0	ENST00000257430.4:c.3549T>A	p.Tyr1183Ter	p.Y1183*	ENST00000257430	NM_000038.5	1183	taT/taA																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50480588	50480588	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	159	429	0	ENST00000394963.4:c.458T>G	p.Phe153Cys	p.F153C	ENST00000394963	NM_003076.4	153	tTt/tGt																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117960	70117960	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	86	125	0	ENST00000245479.2:c.428G>A	p.Trp143Ter	p.W143*	ENST00000245479	NM_000346.3	143	tGg/tAg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11319341	11319341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	232	611	0	ENST00000361445.4:c.126G>T	p.Lys42Asn	p.K42N	ENST00000361445	NM_004958.3	42	aaG/aaT																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16248743	16248743	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	39	405	1	ENST00000375759.3:c.1750-1G>T		p.X584_splice	ENST00000375759	NM_015001.2	584																																													NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226578282	226578282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	220	633	2	ENST00000366794.5:c.446C>A	p.Pro149Gln	p.P149Q	ENST00000366794	NM_001618.3	149	cCa/cAa																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61724082	61724082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	59	612	0	ENST00000401558.2:c.820G>A	p.Val274Met	p.V274M	ENST00000401558	NM_003400.3	274	Gtg/Atg																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198257146	198257146	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	69	554	0	ENST00000335508.6:c.3796T>A	p.Trp1266Arg	p.W1266R	ENST00000335508	NM_012433.2	1266	Tgg/Agg																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204735609	204735609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	120	330	0	ENST00000302823.3:c.410C>T	p.Pro137Leu	p.P137L	ENST00000302823	NM_005214.4	137	cCg/cTg																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662389	227662389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	136	359	1	ENST00000305123.5:c.1066G>A	p.Ala356Thr	p.A356T	ENST00000305123	NM_005544.2	356	Gcc/Acc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47127716	47127716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	294	514	0	ENST00000409792.3:c.5366G>A	p.Gly1789Asp	p.G1789D	ENST00000409792	NM_014159.6	1789	gGc/gAc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	52	221	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186504306	186504306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	146	275	0	ENST00000323963.5:c.643G>A	p.Ala215Thr	p.A215T	ENST00000323963		215	Gcc/Acc																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	255	554	2	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1264632	1264632	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	224	779	0	ENST00000310581.5:c.2730A>C	p.Glu910Asp	p.E910D	ENST00000310581	NM_198253.2	910	gaA/gaC																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	183	524	0	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	82	239	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	206	416	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874710	151874710	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	246	554	0	ENST00000262189.6:c.7828C>T	p.Arg2610Ter	p.R2610*	ENST00000262189	NM_170606.2	2610	Cga/Tga																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80409425	80409425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	136	260	0	ENST00000286548.4:c.689T>C	p.Val230Ala	p.V230A	ENST00000286548	NM_002072.3	230	gTa/gCa																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93606313	93606313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	195	586	1	ENST00000375746.1:c.133C>T	p.Arg45Cys	p.R45C	ENST00000375746	NM_001174167.1	45	Cgc/Tgc																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1040429	1040429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	242	670	0	ENST00000358495.3:c.143G>A	p.Gly48Asp	p.G48D	ENST00000358495	NM_134424.2	48	gGc/gAc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133202828	133202828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	47	601	1	ENST00000320574.5:c.6406G>A	p.Gly2136Ser	p.G2136S	ENST00000320574	NM_006231.2	2136	Ggc/Agc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29001303	29001303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201407326		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	263	534	0	ENST00000282397.4:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000282397	NM_002019.4	477	Gaa/Aaa																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007878	45007878	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	224	408	0	ENST00000558401.1:c.325C>T	p.Gln109Ter	p.Q109*	ENST00000558401	NM_004048.2	109	Cag/Tag																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2130352	2130352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	154	554	1	ENST00000219476.3:c.3584C>T	p.Ala1195Val	p.A1195V	ENST00000219476	NM_000548.3	1195	gCg/gTg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2135300	2135300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	222	653	0	ENST00000219476.3:c.4639G>A	p.Val1547Ile	p.V1547I	ENST00000219476	NM_000548.3	1547	Gtc/Atc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858029	9858029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	260	718	0	ENST00000330684.3:c.3372G>T	p.Lys1124Asn	p.K1124N	ENST00000330684	NM_001134407.1	1124	aaG/aaT																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67660469	67660469	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	142	500	0	ENST00000264010.4:c.1369C>T	p.Arg457Ter	p.R457*	ENST00000264010	NM_006565.3	457	Cga/Tga																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81972439	81972439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	393	1025	1	ENST00000359376.3:c.3232C>T	p.Arg1078Ter	p.R1078*	ENST00000359376	NM_002661.3	1078	Cga/Tga																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89349604	89349604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	444	1110	0	ENST00000301030.4:c.3346G>A	p.Ala1116Thr	p.A1116T	ENST00000301030	NM_001256183.1	1116	Gca/Aca																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29677273	29677273	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs143474365		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	68	578	0	ENST00000358273.4:c.7394A>G	p.Asp2465Gly	p.D2465G	ENST00000358273	NM_001042492.2	2465	gAt/gGt																																												NEWRECORD																																		
HOXB13	0	MSKCC	GRCh37	17	46805453	46805453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	173	896	0	ENST00000290295.7:c.503G>A	p.Ser168Asn	p.S168N	ENST00000290295	NM_006361.5	168	aGt/aAt																																												NEWRECORD																																		
GNA11	0	MSKCC	GRCh37	19	3115006	3115006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	184	617	1	ENST00000078429.4:c.541C>T	p.Arg181Trp	p.R181W	ENST00000078429	NM_002067.2	181	Cgg/Tgg																																												NEWRECORD																																		
GNA11	0	MSKCC	GRCh37	19	3119286	3119286	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	245	749	0	ENST00000078429.4:c.818T>G	p.Leu273Arg	p.L273R	ENST00000078429	NM_002067.2	273	cTc/cGc																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17955106	17955106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	186	530	0	ENST00000458235.1:c.121C>A	p.Leu41Ile	p.L41I	ENST00000458235	NM_000215.3	41	Cta/Ata																																												NEWRECORD																																		
CD79A	0	MSKCC	GRCh37	19	42383059	42383059	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	166	543	1	ENST00000221972.3:c.80-1G>T		p.X27_splice	ENST00000221972	NM_021601.3	27																																													NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	127	410	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123224563	123224563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	380	395	0	ENST00000218089.9:c.3416T>C	p.Met1139Thr	p.M1139T	ENST00000218089	NM_001042749.1	1139	aTg/aCg																																												NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	237	761	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89811410	89811410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	44	664	0	ENST00000389301.3:c.3583del	p.Arg1195GlyfsTer52	p.R1195Gfs*52	ENST00000389301	NM_000135.2	1195	Cgg/gg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47098688	47098694	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCCAT	GGTCCAT	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	269	706	0	ENST00000409792.3:c.6580_6586del	p.Met2194GlnfsTer52	p.M2194Qfs*52	ENST00000409792	NM_014159.6	2194	ATGGACCca/ca																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106155700	106155700	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	184	508	0	ENST00000380013.4:c.605delA	p.Asn202ThrfsTer5	p.N202Tfs*5	ENST00000380013	NM_001127208.2	201	Aaa/aa																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23646575	23646576	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	137	311	0	ENST00000261584.4:c.1291_1292del	p.His432PhefsTer9	p.H432Ffs*9	ENST00000261584	NM_024675.3	431	AGt/t																																												NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	179	510	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	271	575	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																												NEWRECORD																																		
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	276	775	2	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	283	718	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	181	548	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	304	925	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099639	157099639	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	15	36	0	ENST00000346085.5:c.580del	p.Glu194SerfsTer72	p.E194Sfs*72	ENST00000346085	NM_020732.3	192	atG/at																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508725	106508725	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	179	478	0	ENST00000359195.3:c.723del	p.Gly242AlafsTer17	p.G242Afs*17	ENST00000359195	NM_002649.2	240	aCc/ac																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52623187	52623187	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	71	680	0	ENST00000394830.3:c.2864del	p.Asn955ThrfsTer53	p.N955Tfs*53	ENST00000394830	NM_018313.4	955	aAc/ac																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0007230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	289	458	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65544644	65544653	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAGCATTC	AAGAGCATTC	-			P-0007230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	543	399	0	ENST00000358664.4:c.273_282delGAATGCTCTT	p.Gln91HisfsTer76	p.Q91Hfs*76	ENST00000358664	NM_002382.4	91	caGAATGCTCTT/ca																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	336	381	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	265	417	0	ENST00000269305.4:c.577C>G	p.His193Asp	p.H193D	ENST00000269305	NM_001126112.2	193	Cat/Gat																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88679811	88679811	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	225	414	0	ENST00000360948.2:c.652A>C	p.Asn218His	p.N218H	ENST00000360948	NM_001012338.2	218	Aac/Cac																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934931	9934931	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	103	286	0	ENST00000330684.3:c.1359G>C	p.Lys453Asn	p.K453N	ENST00000330684	NM_001134407.1	453	aaG/aaC																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174357	112174358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	196	271	0	ENST00000257430.4:c.3067dup	p.Thr1023AsnfsTer6	p.T1023Nfs*6	ENST00000257430	NM_000038.5	1022	-/A																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	175996825	175996825	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			586	122	307	0	ENST00000367669.3:c.1613-1G>T		p.X538_splice	ENST00000367669	NM_022457.5	538																																													NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225422472	225422472	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	541	491	1	ENST00000264414.4:c.168G>C	p.Glu56Asp	p.E56D	ENST00000264414	NM_003590.4	56	gaG/gaC																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55987337	55987337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	223	252	0	ENST00000263923.4:c.88G>T	p.Asp30Tyr	p.D30Y	ENST00000263923	NM_002253.2	30	Gat/Tat																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38953162	38953162	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200255149		P-0001467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			862	193	219	0	ENST00000357387.3:c.2822A>G	p.Asn941Ser	p.N941S	ENST00000357387	NM_152756.3	941	aAt/aGt																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32169961	32169961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	468	472	0	ENST00000375023.3:c.3647C>T	p.Ser1216Phe	p.S1216F	ENST00000375023	NM_004557.3	1216	tCc/tTc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43609949	43609949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	508	441	1	ENST00000355710.3:c.1901G>A	p.Cys634Tyr	p.C634Y	ENST00000355710	NM_020975.4	634	tGc/tAc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49033828	49033828	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	876	479	4	ENST00000267163.4:c.1965T>A	p.Tyr655Ter	p.Y655*	ENST00000267163	NM_000321.2	655	taT/taA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			666	248	495	2	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	736889	736889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1187	649	643	4	ENST00000314574.4:c.1210G>T	p.Val404Leu	p.V404L	ENST00000314574	NM_005433.3	404	Gta/Tta																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15292450	15292450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	323	324	0	ENST00000263388.2:c.2729G>C	p.Cys910Ser	p.C910S	ENST00000263388	NM_000435.2	910	tGc/tCc																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53230892	53230892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	143	382	0	ENST00000375401.3:c.1901G>T	p.Arg634Leu	p.R634L	ENST00000375401	NM_004187.3	634	cGc/cTc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578470	7578471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	196	245	2	ENST00000269305.4:c.459dup	p.Gly154ArgfsTer27	p.G154Rfs*27	ENST00000269305	NM_001126112.2	153	-/C																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18552592	18552606	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GACTCTCTGAAGAAA	GACTCTCTGAAGAAA	CAAAG			P-0001467-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1045	442	71	0	ENST00000266497.5:c.2004-1_2017delinsCAAAG		p.X668_splice	ENST00000266497		668																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	213	575	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023559	27023560	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	44	485	0	ENST00000324856.7:c.671dup	p.Pro225AlafsTer175	p.P225Afs*175	ENST00000324856	NM_006015.4	222	tac/taCc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	186	503	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	169	415	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																												NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56184065	56184065	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	187	385	0	ENST00000399503.3:c.4270C>T	p.Gln1424Ter	p.Q1424*	ENST00000399503	NM_005921.1	1424	Caa/Taa																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95562578	95562578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	75	439	0	ENST00000343455.3:c.4679C>T	p.Ala1560Val	p.A1560V	ENST00000343455	NM_177438.2	1560	gCg/gTg																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67477087	67477087	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	501	646	0	ENST00000327367.4:c.894C>A	p.Tyr298Ter	p.Y298*	ENST00000327367	NM_005902.3	298	taC/taA																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45374929	45374929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	238	529	0	ENST00000262160.6:c.914C>T	p.Pro305Leu	p.P305L	ENST00000262160	NM_005901.5	305	cCa/cTa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	571	672	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47162516	47162516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	117	282	0	ENST00000409792.3:c.3610A>G	p.Ile1204Val	p.I1204V	ENST00000409792	NM_014159.6	1204	Att/Gtt																																												NEWRECORD																																		
NPM1	0	MSKCC	GRCh37	5	170834766	170834766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	135	428	0	ENST00000296930.5:c.834G>C	p.Met278Ile	p.M278I	ENST00000296930	NM_002520.6	278	atG/atC																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5080375	5080375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	62	231	0	ENST00000381652.3:c.2278C>G	p.Gln760Glu	p.Q760E	ENST00000381652	NM_004972.3	760	Caa/Gaa																																												NEWRECORD																																		
PRKAR1A	0	MSKCC	GRCh37	17	66518915	66518915	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	194	336	0	ENST00000358598.2:c.196C>T	p.Gln66Ter	p.Q66*	ENST00000358598	NM_212471.2	66	Cag/Tag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49444193	49444194	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	194	603	0	ENST00000301067.7:c.3177dup	p.Lys1060GlufsTer8	p.K1060Efs*8	ENST00000301067	NM_003482.3	1059	-/G																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187557246	187557246	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	154	442	0	ENST00000441802.2:c.4116del	p.Val1373LeufsTer4	p.V1373Lfs*4	ENST00000441802	NM_005245.3	1372	ccC/cc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	99	248	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88680656	88680656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	97	428	0	ENST00000360948.2:c.601C>T	p.Arg201Cys	p.R201C	ENST00000360948	NM_001012338.2	201	Cgc/Tgc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591925	48591925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			666	83	412	0	ENST00000342988.3:c.1088G>T	p.Cys363Phe	p.C363F	ENST00000342988	NM_005359.5	363	tGt/tTt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	43	224	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0004251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	30	265	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	15	158	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579409	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0004251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	30	118	0	ENST00000269305.4:c.277_278delCT	p.Leu93ValfsTer55	p.L93Vfs*55	ENST00000269305	NM_001126112.2	93	CTg/g																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173562	112173563	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	34	247	0	ENST00000257430.4:c.2271_2272insT	p.Lys758Ter	p.K758*	ENST00000257430	NM_000038.5	757	-/T																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	96	548	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	38	401	1				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76918921	76918921	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1317	74	1166	3	ENST00000373344.5:c.4070del	p.Lys1357ArgfsTer18	p.K1357Rfs*18	ENST00000373344	NM_000489.3	1357	aAg/ag																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	86	618	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057727	27057727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	183	1021	0	ENST00000324856.7:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000324856	NM_006015.4	479	Cag/Tag																																												NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128750639	128750639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	114	670	1	ENST00000377970.2:c.176C>T	p.Ala59Val	p.A59V	ENST00000377970	NM_002467.4	59	gCg/gTg																																												NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	49	723	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																												NEWRECORD																																		
HIST1H2BD	3017	MSKCC	GRCh37	6	26158465	26158467	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-	rs766586530		P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	62	527	0	ENST00000289316.2:c.73_75del	p.Lys25del	p.K25del	ENST00000289316	NM_138720.2	23	cAGAag/cag																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149997825	149997826	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	53	648	0	ENST00000253339.5:c.2641dup	p.Asp881GlyfsTer40	p.D881Gfs*40	ENST00000253339		881	gat/gGat																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108126993	108126994	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	84	804	0	ENST00000278616.4:c.2178dup	p.Gly727TrpfsTer11	p.G727Wfs*11	ENST00000278616	NM_000051.3	726	ctt/cTtt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49421042	49421042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	115	616	0	ENST00000301067.7:c.14707G>A	p.Val4903Met	p.V4903M	ENST00000301067	NM_003482.3	4903	Gtg/Atg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991949	72991949	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	139	940	0	ENST00000268489.5:c.2096del	p.Gly699AlafsTer125	p.G699Afs*125	ENST00000268489	NM_006885.3	699	gGc/gc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16075224	16075224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	71	600	1	ENST00000268712.3:c.328C>T	p.Arg110Cys	p.R110C	ENST00000268712	NM_006311.3	110	Cgt/Tgt																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15298020	15298020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	97	607	0	ENST00000263388.2:c.1736G>A	p.Cys579Tyr	p.C579Y	ENST00000263388	NM_000435.2	579	tGc/tAc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178928220	178928220	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	74	463	0	ENST00000263967.3:c.1406A>G	p.Glu469Gly	p.E469G	ENST00000263967	NM_006218.2	469	gAa/gGa																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056464	26056465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	26	324	0	ENST00000343677.2:c.192dup	p.Ala65SerfsTer8	p.A65Sfs*8	ENST00000343677	NM_005319.3	64	-/A																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30673776	30673776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	51	583	4	ENST00000376406.3:c.3184G>T	p.Ala1062Ser	p.A1062S	ENST00000376406	NM_014641.2	1062	Gca/Tca																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32180951	32180951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	99	559	0	ENST00000375023.3:c.2399C>T	p.Pro800Leu	p.P800L	ENST00000375023	NM_004557.3	800	cCg/cTg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157528099	157528099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	46	407	0	ENST00000346085.5:c.5824G>A	p.Ala1942Thr	p.A1942T	ENST00000346085	NM_020732.3	1942	Gct/Act																																												NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0010070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	67	465	2	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202141679	202141679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	70	470	0	ENST00000358485.4:c.967C>A	p.His323Asn	p.H323N	ENST00000358485	NM_001080125.1	323	Cac/Aac																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133226305	133226305	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	114	772	5	ENST00000320574.5:c.3753G>A	p.Trp1251Ter	p.W1251*	ENST00000320574	NM_006231.2	1251	tgG/tgA																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81929426	81929426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1502	146	903	1	ENST00000359376.3:c.1087G>A	p.Gly363Arg	p.G363R	ENST00000359376	NM_002661.3	363	Ggg/Agg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89351431	89351431	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1440	122	939	0	ENST00000301030.4:c.1519C>A	p.Leu507Met	p.L507M	ENST00000301030	NM_001256183.1	507	Ctg/Atg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29653185	29653185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	65	395	0	ENST00000358273.4:c.5183C>T	p.Ala1728Val	p.A1728V	ENST00000358273	NM_001042492.2	1728	gCt/gTt																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15354088	15354088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	25	203	0	ENST00000263377.2:c.2792A>G	p.Tyr931Cys	p.Y931C	ENST00000263377	NM_058243.2	931	tAc/tGc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44929280	44929280	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	137	519	0	ENST00000377967.4:c.2380A>C	p.Thr794Pro	p.T794P	ENST00000377967	NM_021140.2	794	Act/Cct																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412156	63412156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	164	664	1	ENST00000330258.3:c.1011G>T	p.Met337Ile	p.M337I	ENST00000330258	NM_152424.3	337	atG/atT																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412162	63412162	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	160	663	0	ENST00000330258.3:c.1005G>T	p.Gln335His	p.Q335H	ENST00000330258	NM_152424.3	335	caG/caT																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740727	58740727	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1659	147	1051	2	ENST00000305921.3:c.1636delC	p.Leu546Ter	p.L546*	ENST00000305921	NM_003620.3	544	ggC/gg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78811748	78811751	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0010070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	81	581	0	ENST00000306801.3:c.1170_1173delGTCT	p.Gln392CysfsTer21	p.Q392Cfs*21	ENST00000306801	NM_020761.2	388	aTCTGt/at																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52597361	52597380	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGAAGGAGGTTCAATGACC	GAGAAGGAGGTTCAATGACC	A			P-0010070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1212	93	834	0	ENST00000394830.3:c.3930_3930+19delinsT		p.X1310_splice	ENST00000394830	NM_018313.4	1310																																													NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162740216	162740216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	270	300	1	ENST00000367921.3:c.1418G>A	p.Arg473His	p.R473H	ENST00000367921	NM_006182.2	473	cGc/cAc																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39934190	39934190	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146403660		P-0003133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	95	418	0	ENST00000378444.4:c.409G>A	p.Val137Ile	p.V137I	ENST00000378444	NM_001123385.1	137	Gtc/Atc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115907	8115908	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	199	215	0	ENST00000346208.3:c.1254dup	p.Pro419AlafsTer88	p.P419Afs*88	ENST00000346208		418	acg/acGg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0013056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	17	640	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249014	55249015	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCCCCACGTGTG			P-0013056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	210	611	0	ENST00000275493.2:c.2315_2326dup	p.Pro772_Cys775dup	p.P772_C775dup	ENST00000275493	NM_005228.3	772	aac/aaCCCCCACGTGTGc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001918-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1146	273	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
RAC1	0	MSKCC	GRCh37	7	6426908	6426908	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001918-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1223	81	291	0	ENST00000356142.4:c.101C>G	p.Pro34Arg	p.P34R	ENST00000356142	NM_018890.3	34	cCt/cGt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023007	27023008	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			P-0001918-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			24	12	9	0	ENST00000324856.7:c.126_128dup	p.Ala45dup	p.A45dup	ENST00000324856	NM_006015.4	45	gag/gaGGCg																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001918-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			616	42	298	0	ENST00000288135.5:c.1924A>C	p.Lys642Gln	p.K642Q	ENST00000288135	NM_000222.2	642	Aaa/Caa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	22	62	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87636290	87636290	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	136	498	0	ENST00000277120.3:c.2455A>T	p.Ile819Phe	p.I819F	ENST00000277120		819	Atc/Ttc																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97876984	97876984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	88	350	1	ENST00000289081.3:c.1081C>T	p.Arg361Trp	p.R361W	ENST00000289081	NM_000136.2	361	Cgg/Tgg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48955563	48955563	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	134	319	0	ENST00000267163.4:c.1681del	p.Ala562HisfsTer49	p.A562Hfs*49	ENST00000267163	NM_000321.2	560	tCc/tc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576900	7576901	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0003409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	107	263	0	ENST00000269305.4:c.945_946del	p.Gln317AlafsTer19	p.Q317Afs*19	ENST00000269305	NM_001126112.2	315	tcTCcc/tccc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44911036	44911037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	196	311	0	ENST00000377967.4:c.738dup	p.Gln247ThrfsTer16	p.Q247Tfs*16	ENST00000377967	NM_021140.2	246	tta/ttAa																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			575	129	287	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			618	80	341	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56152503	56152503	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			814	80	371	0	ENST00000399503.3:c.559G>T	p.Glu187Ter	p.E187*	ENST00000399503	NM_005921.1	187	Gag/Tag																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108225552	108225552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			743	62	333	0	ENST00000278616.4:c.8801C>A	p.Thr2934Asn	p.T2934N	ENST00000278616	NM_000051.3	2934	aCc/aAc																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12028660	12028660	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			756	88	421	0	ENST00000353533.5:c.863C>G	p.Ser288Cys	p.S288C	ENST00000353533	NM_003010.3	288	tCt/tGt																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41245021	41245021	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			577	56	404	0	ENST00000357654.3:c.2527A>G	p.Thr843Ala	p.T843A	ENST00000357654	NM_007294.3	843	Aca/Gca																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117627	70117628	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			483	81	302	1	ENST00000245479.2:c.96dup	p.Ser33LeufsTer219	p.S33Lfs*219	ENST00000245479	NM_000346.3	32	ggc/ggCc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176186	112176187	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TACACCG			P-0001394-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			663	80	369	0	ENST00000257430.4:c.4896_4902dup	p.Gly1635TyrfsTer5	p.G1635Yfs*5	ENST00000257430	NM_000038.5	1632	ttt/ttTACACCGt																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001484-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			955	130	428	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001484-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			780	62	395	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108164065	108164066	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GATA			P-0001484-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			703	50	290	0	ENST00000278616.4:c.4642_4645dup	p.Asn1549ArgfsTer2	p.N1549Rfs*2	ENST00000278616	NM_000051.3	1546	gtg/gtGATAg																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114710595	114710597	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs754968616		P-0001484-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	92	649	0	ENST00000543371.1:c.85_87del	p.Glu29del	p.E29del	ENST00000543371	NM_001198531.1	27	cAGGag/cag																																												NEWRECORD																																		
TSC2	7249	MSKCC	GRCh37	16	2134248	2134250	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-	rs1385014323		P-0001484-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			766	50	384	0	ENST00000219476.3:c.4030_4032del	p.Glu1344del	p.E1344del	ENST00000219476	NM_000548.3	1342	cAGGag/cag																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90631656	90631682	+	protein_altering_variant	In_Frame_Del	DEL	TGACACCACTGCCATCTTTTGGGGTGA	TGACACCACTGCCATCTTTTGGGGTGA	GTG			P-0001484-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			865	103	414	0	ENST00000330062.3:c.587_613delinsCAC	p.Phe196_Lys205delinsSerGln	p.F196_K205delinsSQ	ENST00000330062	NM_002168.2	196	tTCACCCCAAAAGATGGCAGTGGTGTCAag/tCACag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	19	162	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29606715	29606715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	18	231	1	ENST00000389048.3:c.1165C>T	p.Leu389Phe	p.L389F	ENST00000389048	NM_004304.4	389	Ctc/Ttc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16024518	16024518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			730	39	438	0	ENST00000268712.3:c.1700C>T	p.Ala567Val	p.A567V	ENST00000268712	NM_006311.3	567	gCc/gTc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCCCC			P-0000670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	43	236	0	ENST00000275493.2:c.2314_2319dupCCCCAC	p.Pro772_His773dup	p.P772_H773dup	ENST00000275493	NM_005228.3	772	aac/aACCCCCac																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974712	21974720	+	inframe_deletion	In_Frame_Del	DEL	TGGGCAGCG	TGGGCAGCG	-			P-0000670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	17	219	0	ENST00000304494.5:c.107_115del	p.Ala36_Asn39delinsAsp	p.A36_N39delinsD	ENST00000304494	NM_000077.4	36	gCGCTGCCCAac/gac																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974712	21974720	+	inframe_deletion	In_Frame_Del	DEL	TGGGCAGCG	TGGGCAGCG	-			P-0000670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	17	219	0	ENST00000304494.5:c.107_115del	p.Ala36_Asn39delinsAsp	p.A36_N39delinsD	ENST00000304494	NM_000077.4	36	gCGCTGCCCAac/gac																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	245	290	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0006583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	472	455	1	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176638403	176638403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	246	361	0	ENST00000439151.2:c.3003C>A	p.Asp1001Glu	p.D1001E	ENST00000439151	NM_022455.4	1001	gaC/gaA																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101900301	101900301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	296	427	2	ENST00000374994.4:c.735G>T	p.Glu245Asp	p.E245D	ENST00000374994	NM_004612.2	245	gaG/gaT																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108196947	108196947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	243	315	0	ENST00000278616.4:c.6970G>C	p.Ala2324Pro	p.A2324P	ENST00000278616	NM_000051.3	2324	Gca/Cca																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108206581	108206581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	303	356	0	ENST00000278616.4:c.8161G>A	p.Asp2721Asn	p.D2721N	ENST00000278616	NM_000051.3	2721	Gac/Aac																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	406362	406362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	274	412	0	ENST00000399788.2:c.4079C>A	p.Thr1360Lys	p.T1360K	ENST00000399788	NM_001042603.1	1360	aCa/aAa																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81971431	81971431	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1691	474	602	0	ENST00000359376.3:c.3121G>C	p.Glu1041Gln	p.E1041Q	ENST00000359376	NM_002661.3	1041	Gag/Cag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27097799	27097800	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	321	340	0	ENST00000324856.7:c.3389dup	p.Gln1131ProfsTer62	p.Q1131Pfs*62	ENST00000324856	NM_006015.4	1130	atc/aTtc																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100909851	100909851	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	136	258	0	ENST00000325455.5:c.2798del	p.Lys933SerfsTer11	p.K933Sfs*11	ENST00000325455	NM_001202474.3	933	aAg/ag																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37618689	37618690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	51	448	0	ENST00000447079.4:c.366dup	p.Leu123ThrfsTer4	p.L123Tfs*4	ENST00000447079	NM_015083.1	122	tta/ttAa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49443560	49443560	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	320	372	0	ENST00000301067.7:c.3811C>G	p.Leu1271Val	p.L1271V	ENST00000301067	NM_003482.3	1271	Cta/Gta																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52716000	52716000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	401	493	0	ENST00000322088.6:c.565C>G	p.Leu189Val	p.L189V	ENST00000322088	NM_014225.5	189	Ctg/Gtg																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0009615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	331	443	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	52	329	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	89	556	1	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249348	110249348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	115	952	0	ENST00000374672.4:c.1225A>C	p.Lys409Gln	p.K409Q	ENST00000374672	NM_004235.4	409	Aag/Cag																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139395151	139395151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	85	678	0	ENST00000277541.6:c.5787G>C	p.Glu1929Asp	p.E1929D	ENST00000277541	NM_017617.3	1929	gaG/gaC																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56155607	56155608	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	55	440	0	ENST00000399503.3:c.699_700del	p.Gly234ArgfsTer66	p.G234Rfs*66	ENST00000399503	NM_005921.1	233	ccAGga/ccga																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56179388	56179389	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0013507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	158	510	0	ENST00000399503.3:c.3703_3704dup	p.Gln1235HisfsTer11	p.Q1235Hfs*11	ENST00000399503	NM_005921.1	1234	aaa/aaACa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16055262	16055264	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CTT	CTT	A			P-0013507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	72	495	0	ENST00000268712.3:c.838_840delinsT	p.Lys280TyrfsTer14	p.K280Yfs*14	ENST00000268712	NM_006311.3	280	AAG/T																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	675	817	1	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37059000	37059000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	100	655	0	ENST00000231790.2:c.794G>A	p.Arg265His	p.R265H	ENST00000231790	NM_000249.3	265	cGt/cAt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107086	27107087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	193	381	0	ENST00000324856.7:c.6700dup	p.Ala2234GlyfsTer44	p.A2234Gfs*44	ENST00000324856	NM_006015.4	2233	cgg/cGgg																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153271193	153271193	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	247	304	0	ENST00000281708.4:c.584+1G>A		p.X195_splice	ENST00000281708	NM_033632.3	195																																													NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88677077	88677077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	161	352	0	ENST00000372037.3:c.862A>G	p.Ile288Val	p.I288V	ENST00000372037	NM_004329.2	288	Ata/Gta																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576891	7576891	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	444	418	0	ENST00000269305.4:c.955A>T	p.Lys319Ter	p.K319*	ENST00000269305	NM_001126112.2	319	Aag/Tag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578379	7578379	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	277	297	0	ENST00000269305.4:c.551del	p.Asp184ValfsTer63	p.D184Vfs*63	ENST00000269305	NM_001126112.2	184	gAt/gt																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40944500	40944501	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	240	476	0	ENST00000373198.4:c.2001_2002insA	p.Leu668IlefsTer16	p.L668Ifs*16	ENST00000373198	NM_133170.3	667	-/A																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542062	187542063	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	446	294	0	ENST00000441802.2:c.5677dup	p.Tyr1893LeufsTer15	p.Y1893Lfs*15	ENST00000441802	NM_005245.3	1893	tac/tTac																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11319442	11319442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	262	509	1	ENST00000361445.4:c.25G>A	p.Ala9Thr	p.A9T	ENST00000361445	NM_004958.3	9	Gcc/Acc																																												NEWRECORD																																		
ID3	0	MSKCC	GRCh37	1	23885833	23885833	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	310	797	1	ENST00000374561.5:c.85G>T	p.Gly29Trp	p.G29W	ENST00000374561	NM_002167.4	29	Ggg/Tgg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27087437	27087437	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	242	792	1	ENST00000324856.7:c.2011G>T	p.Gly671Ter	p.G671*	ENST00000324856	NM_006015.4	671	Gga/Tga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27087447	27087447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	321	769	1	ENST00000324856.7:c.2021G>A	p.Ser674Asn	p.S674N	ENST00000324856	NM_006015.4	674	aGt/aAt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106732	27106732	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	258	583	1	ENST00000324856.7:c.6343C>T	p.Gln2115Ter	p.Q2115*	ENST00000324856	NM_006015.4	2115	Cag/Tag																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36932404	36932404	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1293	396	1019	1	ENST00000361632.4:c.2065G>T	p.Gly689Cys	p.G689C	ENST00000361632		689	Ggc/Tgc																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65305321	65305321	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1210	180	736	0	ENST00000342505.4:c.2807A>G	p.Asn936Ser	p.N936S	ENST00000342505	NM_002227.2	936	aAc/aGc																																												NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	222	523	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155870382	155870382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	147	590	0	ENST00000368323.3:c.457G>A	p.Ala153Thr	p.A153T	ENST00000368323	NM_006912.5	153	Gcc/Acc																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156838305	156838305	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	149	525	0	ENST00000524377.1:c.583A>G	p.Thr195Ala	p.T195A	ENST00000524377	NM_002529.3	195	Acg/Gcg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156841544	156841544	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	192	451	0	ENST00000524377.1:c.847T>C	p.Ser283Pro	p.S283P	ENST00000524377	NM_002529.3	283	Tcc/Ccc																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156851274	156851274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	174	563	2	ENST00000524377.1:c.2231G>A	p.Arg744His	p.R744H	ENST00000524377	NM_002529.3	744	cGt/cAt																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162724626	162724626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	201	441	0	ENST00000367921.3:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000367921	NM_006182.2	133	cGg/cAg																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226576420	226576420	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	253	554	0	ENST00000366794.5:c.654A>T	p.Glu218Asp	p.E218D	ENST00000366794	NM_001618.3	218	gaA/gaT																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25966920	25966920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	241	669	0	ENST00000435504.4:c.2286G>T	p.Gln762His	p.Q762H	ENST00000435504		762	caG/caT																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29416220	29416220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	276	632	0	ENST00000389048.3:c.4733C>T	p.Pro1578Leu	p.P1578L	ENST00000389048	NM_004304.4	1578	cCt/cTt																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178129296	178129296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	176	493	0	ENST00000397062.3:c.9C>A	p.Asp3Glu	p.D3E	ENST00000397062	NM_006164.4	3	gaC/gaA																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190719455	190719455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	71	392	0	ENST00000441310.2:c.1457G>A	p.Gly486Asp	p.G486D	ENST00000441310	NM_000534.4	486	gGt/gAt																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198285218	198285218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	103	441	0	ENST00000335508.6:c.349G>T	p.Asp117Tyr	p.D117Y	ENST00000335508	NM_012433.2	117	Gat/Tat																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47125235	47125235	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	106	654	0	ENST00000409792.3:c.6035T>C	p.Leu2012Pro	p.L2012P	ENST00000409792	NM_014159.6	2012	cTc/cCc																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49723561	49723561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	16	23	0	ENST00000449682.2:c.1081C>T	p.Arg361Trp	p.R361W	ENST00000449682	NM_020998.3	361	Cgg/Tgg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52598124	52598124	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	52	576	1	ENST00000394830.3:c.3742G>T	p.Gly1248Ter	p.G1248*	ENST00000394830	NM_018313.4	1248	Gga/Tga																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52682379	52682379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	103	575	0	ENST00000394830.3:c.794C>A	p.Pro265His	p.P265H	ENST00000394830	NM_018313.4	265	cCt/cAt																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	70005639	70005639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	120	450	2	ENST00000352241.4:c.971G>A	p.Arg324His	p.R324H	ENST00000352241	NM_198159.2	324	cGc/cAc																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	70014370	70014370	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1571	236	881	0	ENST00000352241.4:c.1534A>T	p.Ser512Cys	p.S512C	ENST00000352241	NM_198159.2	512	Agc/Tgc																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71037207	71037207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	162	513	0	ENST00000318789.4:c.1084C>A	p.Leu362Met	p.L362M	ENST00000318789	NM_032682.5	362	Ctg/Atg																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128204737	128204737	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs35079193		P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1296	236	980	1	ENST00000341105.2:c.704C>A	p.Thr235Asn	p.T235N	ENST00000341105	NM_032638.4	235	aCt/aAt																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134851631	134851631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	218	535	0	ENST00000398015.3:c.1037G>T	p.Arg346Met	p.R346M	ENST00000398015	NM_004441.4	346	aGg/aTg																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134960080	134960080	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1042786		P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	235	517	1	ENST00000398015.3:c.2437G>A	p.Val813Ile	p.V813I	ENST00000398015	NM_004441.4	813	Gtc/Atc																																												NEWRECORD																																		
FOXL2	0	MSKCC	GRCh37	3	138664651	138664651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	21	42	0	ENST00000330315.3:c.914C>T	p.Pro305Leu	p.P305L	ENST00000330315	NM_023067.3	305	cCg/cTg																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142224120	142224120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	170	441	0	ENST00000350721.4:c.5057C>A	p.Pro1686His	p.P1686H	ENST00000350721	NM_001184.3	1686	cCt/cAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	138	424	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185165631	185165631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	46	486	0	ENST00000265026.3:c.906G>T	p.Lys302Asn	p.K302N	ENST00000265026	NM_004721.4	302	aaG/aaT																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186502467	186502467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	186	644	0	ENST00000323963.5:c.190A>G	p.Ile64Val	p.I64V	ENST00000323963		64	Att/Gtt																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186506946	186506946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	209	1074	1	ENST00000323963.5:c.1112G>A	p.Gly371Asp	p.G371D	ENST00000323963		371	gGt/gAt																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1807874	1807874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	192	631	0	ENST00000260795.2:c.1933C>A	p.Leu645Ile	p.L645I	ENST00000260795		645	Ctc/Atc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55564613	55564613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	145	586	0	ENST00000288135.5:c.501G>T	p.Lys167Asn	p.K167N	ENST00000288135	NM_000222.2	167	aaG/aaT																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55948780	55948780	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	83	383	0	ENST00000263923.4:c.3685C>T	p.Arg1229Ter	p.R1229*	ENST00000263923	NM_002253.2	1229	Cga/Tga																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55974024	55974024	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	152	353	1	ENST00000263923.4:c.1292C>A	p.Pro431His	p.P431H	ENST00000263923	NM_002253.2	431	cCt/cAt																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66535336	66535336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	251	724	2	ENST00000273854.3:c.125C>T	p.Thr42Met	p.T42M	ENST00000273854	NM_004439.5	42	aCg/aTg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66535429	66535429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	178	364	0	ENST00000273854.3:c.32G>A	p.Arg11His	p.R11H	ENST00000273854	NM_004439.5	11	cGc/cAc																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153247195	153247195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	49	577	0	ENST00000281708.4:c.1607C>T	p.Thr536Met	p.T536M	ENST00000281708	NM_033632.3	536	aCg/aTg																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153250883	153250883	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	87	552	1	ENST00000281708.4:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000281708	NM_033632.3	393	Cga/Tga																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187527264	187527264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	190	374	0	ENST00000441802.2:c.10310C>T	p.Ala3437Val	p.A3437V	ENST00000441802	NM_005245.3	3437	gCg/gTg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539035	187539035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	306	748	0	ENST00000441802.2:c.8705C>T	p.Ala2902Val	p.A2902V	ENST00000441802	NM_005245.3	2902	gCc/gTc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187540842	187540842	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	110	558	0	ENST00000441802.2:c.6898A>G	p.Thr2300Ala	p.T2300A	ENST00000441802	NM_005245.3	2300	Acg/Gcg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630695	187630695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	195	691	0	ENST00000441802.2:c.287T>C	p.Leu96Pro	p.L96P	ENST00000441802	NM_005245.3	96	cTa/cCa																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86670013	86670013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	78	398	0	ENST00000274376.6:c.1810C>A	p.His604Asn	p.H604N	ENST00000274376	NM_002890.2	604	Cat/Aat																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131939001	131939001	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	13	242	0	ENST00000265335.6:c.2217A>G	p.Ile739Met	p.I739M	ENST00000265335		739	atA/atG																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176519670	176519670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	94	344	0	ENST00000292408.4:c.942G>T	p.Glu314Asp	p.E314D	ENST00000292408	NM_213647.1	314	gaG/gaT																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176636948	176636948	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	119	378	0	ENST00000439151.2:c.1548A>G	p.Ile516Met	p.I516M	ENST00000439151	NM_022455.4	516	atA/atG																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176671214	176671214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	121	475	0	ENST00000439151.2:c.4321C>A	p.Leu1441Met	p.L1441M	ENST00000439151	NM_022455.4	1441	Ctg/Atg																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176673718	176673718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	180	544	0	ENST00000439151.2:c.4418G>A	p.Arg1473Gln	p.R1473Q	ENST00000439151	NM_022455.4	1473	cGa/cAa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176715879	176715879	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	338	771	0	ENST00000439151.2:c.6211A>G	p.Lys2071Glu	p.K2071E	ENST00000439151	NM_022455.4	2071	Aaa/Gaa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176722112	176722112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	156	370	1	ENST00000439151.2:c.7743G>T	p.Lys2581Asn	p.K2581N	ENST00000439151	NM_022455.4	2581	aaG/aaT																																												NEWRECORD																																		
HIST1H3A	0	MSKCC	GRCh37	6	26020964	26020964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1575	386	1210	1	ENST00000357647.3:c.247C>A	p.Leu83Met	p.L83M	ENST00000357647	NM_003529.2	83	Ctg/Atg																																												NEWRECORD																																		
HIST1H3E	0	MSKCC	GRCh37	6	26225789	26225789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1919	351	1257	0	ENST00000360408.1:c.407C>T	p.Ala136Val	p.A136V	ENST00000360408	NM_003532.2	136	gCg/gTg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32183033	32183033	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	193	560	0	ENST00000375023.3:c.1991A>C	p.Asn664Thr	p.N664T	ENST00000375023	NM_004557.3	664	aAc/aCc																																												NEWRECORD																																		
PNRC1	0	MSKCC	GRCh37	6	89793821	89793821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	96	388	0	ENST00000336032.3:c.890C>A	p.Pro297His	p.P297H	ENST00000336032	NM_006813.2	297	cCt/cAt																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93956510	93956510	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	198	772	0	ENST00000369303.4:c.2726G>T	p.Arg909Met	p.R909M	ENST00000369303	NM_004440.3	909	aGg/aTg																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93967822	93967822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	130	766	0	ENST00000369303.4:c.2105C>T	p.Thr702Ile	p.T702I	ENST00000369303	NM_004440.3	702	aCa/aTa																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106552781	106552781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	235	804	1	ENST00000369096.4:c.746G>T	p.Ser249Ile	p.S249I	ENST00000369096	NM_001198.3	249	aGc/aTc																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	111995815	111995815	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	365	768	0	ENST00000368678.4:c.1283A>G	p.Lys428Arg	p.K428R	ENST00000368678		428	aAg/aGg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117665285	117665285	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	84	537	0	ENST00000368508.3:c.4462C>A	p.Leu1488Met	p.L1488M	ENST00000368508	NM_002944.2	1488	Ctg/Atg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117677803	117677803	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	75	329	0	ENST00000368508.3:c.4130C>A	p.Pro1377His	p.P1377H	ENST00000368508	NM_002944.2	1377	cCt/cAt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527547	157527547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	178	358	2	ENST00000346085.5:c.5272G>A	p.Asp1758Asn	p.D1758N	ENST00000346085	NM_020732.3	1758	Gat/Aat																																												NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50468158	50468158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	164	408	0	ENST00000331340.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331340	NM_006060.4	465	Gaa/Aaa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508605	106508605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	119	303	0	ENST00000359195.3:c.599C>T	p.Pro200Leu	p.P200L	ENST00000359195	NM_002649.2	200	cCg/cTg																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106523534	106523534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	156	389	0	ENST00000359195.3:c.2686G>A	p.Val896Met	p.V896M	ENST00000359195	NM_002649.2	896	Gtg/Atg																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116397490	116397490	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	103	466	0	ENST00000397752.3:c.1863-1G>A		p.X621_splice	ENST00000397752	NM_000245.2	621																																													NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453123	140453123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	90	407	0	ENST00000288602.6:c.1812G>T	p.Trp604Cys	p.W604C	ENST00000288602	NM_004333.4	604	tgG/tgT																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151846087	151846087	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	172	426	0	ENST00000262189.6:c.12925T>C	p.Phe4309Leu	p.F4309L	ENST00000262189	NM_170606.2	4309	Ttc/Ctc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151877909	151877909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	60	383	0	ENST00000262189.6:c.7036G>T	p.Gly2346Cys	p.G2346C	ENST00000262189	NM_170606.2	2346	Ggc/Tgc																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117866512	117866512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	49	868	0	ENST00000297338.2:c.1133A>G	p.Gln378Arg	p.Q378R	ENST00000297338	NM_006265.2	378	cAg/cGg																																												NEWRECORD																																		
CD274	0	MSKCC	GRCh37	9	5463089	5463089	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	93	315	0	ENST00000381577.3:c.650A>G	p.Glu217Gly	p.E217G	ENST00000381577	NM_014143.3	217	gAg/gGg																																												NEWRECORD																																		
CD274	0	MSKCC	GRCh37	9	5465529	5465529	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	103	714	0	ENST00000381577.3:c.713G>T	p.Arg238Met	p.R238M	ENST00000381577	NM_014143.3	238	aGg/aTg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8521456	8521456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	142	553	0	ENST00000356435.5:c.782G>A	p.Gly261Glu	p.G261E	ENST00000356435		261	gGg/gAg																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93606223	93606223	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	171	537	0	ENST00000375746.1:c.43T>C	p.Phe15Leu	p.F15L	ENST00000375746	NM_001174167.1	15	Ttc/Ctc																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98220393	98220393	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	279	576	0	ENST00000331920.6:c.3070C>A	p.Leu1024Ile	p.L1024I	ENST00000331920	NM_000264.3	1024	Ctc/Atc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70426902	70426902	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	155	449	0	ENST00000373644.4:c.4562T>C	p.Val1521Ala	p.V1521A	ENST00000373644	NM_030625.2	1521	gTg/gCg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89653802	89653802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	87	393	0	ENST00000371953.3:c.100G>A	p.Ala34Thr	p.A34T	ENST00000371953	NM_000314.4	34	Gct/Act																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692893	89692893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	71	261	0	ENST00000371953.3:c.377C>A	p.Ala126Asp	p.A126D	ENST00000371953	NM_000314.4	126	gCt/gAt																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32410656	32410656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	268	617	3	ENST00000332351.3:c.1502G>A	p.Arg501His	p.R501H	ENST00000332351	NM_024426.4	501	cGc/cAc																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32449553	32449553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	245	615	2	ENST00000332351.3:c.821C>T	p.Thr274Ile	p.T274I	ENST00000332351	NM_024426.4	274	aCc/aTc																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577269	64577269	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	240	570	0	ENST00000337652.1:c.313C>A	p.Leu105Ile	p.L105I	ENST00000337652	NM_130803.2	105	Ctc/Atc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108119659	108119659	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	47	173	0	ENST00000278616.4:c.1066-1G>T		p.X356_splice	ENST00000278616	NM_000051.3	356																																													NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108124674	108124674	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	119	527	0	ENST00000278616.4:c.2032A>G	p.Ile678Val	p.I678V	ENST00000278616	NM_000051.3	678	Att/Gtt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344147	118344147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	147	429	1	ENST00000534358.1:c.2273G>T	p.Arg758Ile	p.R758I	ENST00000534358	NM_005933.3	758	aGa/aTa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118392116	118392116	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	183	366	0	ENST00000534358.1:c.11627A>T	p.Lys3876Met	p.K3876M	ENST00000534358	NM_005933.3	3876	aAg/aTg																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119148943	119148943	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	145	501	0	ENST00000264033.4:c.1163A>T	p.Asp388Val	p.D388V	ENST00000264033	NM_005188.3	388	gAt/gTt																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	417101	417101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	163	414	0	ENST00000399788.2:c.3449C>T	p.Ala1150Val	p.A1150V	ENST00000399788	NM_001042603.1	1150	gCc/gTc																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1040445	1040445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	67	632	1	ENST00000358495.3:c.127C>A	p.Leu43Met	p.L43M	ENST00000358495	NM_134424.2	43	Ctg/Atg																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12043873	12043873	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	140	434	0	ENST00000396373.4:c.1254-2A>G		p.X418_splice	ENST00000396373	NM_001987.4	418																																													NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	119	471	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426642	49426642	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	129	322	0	ENST00000301067.7:c.11846A>G	p.Gln3949Arg	p.Q3949R	ENST00000301067	NM_003482.3	3949	cAa/cGa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49445203	49445203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	39	407	0	ENST00000301067.7:c.2263C>T	p.Arg755Trp	p.R755W	ENST00000301067	NM_003482.3	755	Cgg/Tgg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49449057	49449057	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	247	605	0	ENST00000301067.7:c.49+2T>C		p.X17_splice	ENST00000301067	NM_003482.3	17																																													NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856530	111856530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	170	515	0	ENST00000341259.2:c.581A>C	p.Glu194Ala	p.E194A	ENST00000341259	NM_005475.2	194	gAg/gCg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28901601	28901601	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	98	616	0	ENST00000282397.4:c.2794A>G	p.Lys932Glu	p.K932E	ENST00000282397	NM_002019.4	932	Aag/Gag																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29041123	29041123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	108	601	0	ENST00000282397.4:c.305C>T	p.Thr102Ile	p.T102I	ENST00000282397	NM_002019.4	102	aCt/aTt																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435409	110435409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	159	388	0	ENST00000375856.3:c.2992C>T	p.Pro998Ser	p.P998S	ENST00000375856	NM_003749.2	998	Ccc/Tcc																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81422074	81422074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	148	442	0	ENST00000298171.2:c.50G>T	p.Arg17Met	p.R17M	ENST00000298171	NM_000369.2	17	aGg/aTg																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81609837	81609837	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	127	450	0	ENST00000298171.2:c.1435T>C	p.Ser479Pro	p.S479P	ENST00000298171	NM_000369.2	479	Tct/Cct																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41961782	41961782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1195	72	980	1	ENST00000219905.7:c.690G>T	p.Gln230His	p.Q230H	ENST00000219905	NM_001164273.1	230	caG/caT																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42021464	42021464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1266	78	1003	1	ENST00000219905.7:c.3760C>A	p.Pro1254Thr	p.P1254T	ENST00000219905	NM_001164273.1	1254	Cca/Aca																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42040885	42040885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	372	800	0	ENST00000219905.7:c.5263G>A	p.Val1755Met	p.V1755M	ENST00000219905	NM_001164273.1	1755	Gtg/Atg																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45003782	45003782	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	98	465	0	ENST00000558401.1:c.38T>C	p.Leu13Pro	p.L13P	ENST00000558401	NM_004048.2	13	cTc/cCc																																												NEWRECORD																																		
CD276	0	MSKCC	GRCh37	15	73992011	73992011	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	256	730	2	ENST00000318443.5:c.31G>T	p.Gly11Cys	p.G11C	ENST00000318443	NM_001024736.1	11	Ggt/Tgt																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90628601	90628601	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	289	820	0	ENST00000330062.3:c.986T>C	p.Leu329Pro	p.L329P	ENST00000330062	NM_002168.2	329	cTg/cCg																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	364669	364669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	144	463	0	ENST00000262320.3:c.893G>T	p.Arg298Leu	p.R298L	ENST00000262320	NM_003502.3	298	cGg/cTg																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2220700	2220700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	199	543	0	ENST00000326181.6:c.317C>T	p.Thr106Ile	p.T106I	ENST00000326181	NM_032271.2	106	aCa/aTa																																												NEWRECORD																																		
PDPK1	0	MSKCC	GRCh37	16	2636813	2636813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	280	608	2	ENST00000342085.4:c.1262C>T	p.Ser421Leu	p.S421L	ENST00000342085	NM_002613.4	421	tCg/tTg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3781359	3781359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	208	570	0	ENST00000262367.5:c.5006C>T	p.Thr1669Ile	p.T1669I	ENST00000262367	NM_004380.2	1669	aCc/aTc																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14041717	14041717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	161	552	0	ENST00000311895.7:c.2264C>T	p.Pro755Leu	p.P755L	ENST00000311895	NM_005236.2	755	cCc/cTc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831333	72831333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	302	768	1	ENST00000268489.5:c.5248G>A	p.Ala1750Thr	p.A1750T	ENST00000268489	NM_006885.3	1750	Gct/Act																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81934365	81934365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200919414		P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	280	705	1	ENST00000359376.3:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000359376	NM_002661.3	448	Cgg/Tgg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89335049	89335049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	102	344	0	ENST00000301030.4:c.7829A>G	p.Gln2610Arg	p.Q2610R	ENST00000301030	NM_001256183.1	2610	cAg/cGg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	27	367	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	145	383	0	ENST00000269305.4:c.520A>G	p.Arg174Gly	p.R174G	ENST00000269305	NM_001126112.2	174	Agg/Ggg																																												NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8108344	8108344	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151173438		P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	209	451	0	ENST00000585124.1:c.880G>A	p.Ala294Thr	p.A294T	ENST00000585124	NM_004217.3	294	Gct/Act																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16022787	16022787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	28	489	0	ENST00000268712.3:c.1865C>A	p.Pro622His	p.P622H	ENST00000268712	NM_006311.3	622	cCt/cAt																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16049844	16049844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	29	377	1	ENST00000268712.3:c.928C>T	p.Arg310Cys	p.R310C	ENST00000268712	NM_006311.3	310	Cgt/Tgt																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30315504	30315504	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	195	606	0	ENST00000322652.5:c.1189A>G	p.Thr397Ala	p.T397A	ENST00000322652	NM_015355.2	397	Act/Gct																																												NEWRECORD																																		
RAD51D	0	MSKCC	GRCh37	17	33428338	33428338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	180	512	0	ENST00000335858.7:c.449C>A	p.Pro150His	p.P150H	ENST00000335858	NM_133629.2	150	cCt/cAt																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37673809	37673809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	150	343	0	ENST00000447079.4:c.2963T>C	p.Phe988Ser	p.F988S	ENST00000447079	NM_015083.1	988	tTc/tCc																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696691	47696691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	228	644	0	ENST00000347630.2:c.257T>C	p.Leu86Pro	p.L86P	ENST00000347630	NM_001007230.1	86	cTt/cCt																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435681	56435681	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	55	261	0	ENST00000407977.2:c.1456A>G	p.Ser486Gly	p.S486G	ENST00000407977		486	Agc/Ggc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56448325	56448325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	189	419	0	ENST00000407977.2:c.322A>G	p.Lys108Glu	p.K108E	ENST00000407977		108	Aag/Gag																																												NEWRECORD																																		
RAD51C	0	MSKCC	GRCh37	17	56811479	56811479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	95	351	1	ENST00000337432.4:c.1027C>T	p.Pro343Ser	p.P343S	ENST00000337432	NM_058216.2	343	Cct/Tct																																												NEWRECORD																																		
H3F3B	0	MSKCC	GRCh37	17	73774925	73774925	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	175	661	0	ENST00000254810.4:c.248T>C	p.Leu83Pro	p.L83P	ENST00000254810	NM_005324.3	83	cTg/cCg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2217049	2217049	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	186	498	0	ENST00000398665.3:c.2504C>A	p.Pro835His	p.P835H	ENST00000398665	NM_032482.2	835	cCt/cAt																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5215607	5215607	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	121	399	1	ENST00000357368.4:c.4097-1G>T		p.X1366_splice	ENST00000357368	NM_002850.3	1366																																													NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7172442	7172442	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	83	305	0	ENST00000302850.5:c.1127A>T	p.Asn376Ile	p.N376I	ENST00000302850	NM_000208.2	376	aAt/aTt																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11095027	11095027	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	242	736	1	ENST00000344626.4:c.200A>T	p.Asp67Val	p.D67V	ENST00000344626	NM_003072.3	67	gAc/gTc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11095985	11095985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	243	672	2	ENST00000344626.4:c.259G>A	p.Asp87Asn	p.D87N	ENST00000344626	NM_003072.3	87	Gac/Aac																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11097215	11097215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	94	306	0	ENST00000344626.4:c.706C>A	p.Pro236Thr	p.P236T	ENST00000344626	NM_003072.3	236	Cct/Act																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11170810	11170810	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	77	360	1	ENST00000344626.4:c.4858T>A	p.Ser1620Thr	p.S1620T	ENST00000344626	NM_003072.3	1620	Tcc/Acc																																												NEWRECORD																																		
DNAJB1	0	MSKCC	GRCh37	19	14629051	14629051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	181	534	1	ENST00000254322.2:c.111G>T	p.Lys37Asn	p.K37N	ENST00000254322	NM_006145.1	37	aaG/aaT																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15291872	15291872	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	138	558	0	ENST00000263388.2:c.2894C>A	p.Pro965His	p.P965H	ENST00000263388	NM_000435.2	965	cCc/cAc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15355210	15355210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	165	483	0	ENST00000263377.2:c.2413G>A	p.Val805Met	p.V805M	ENST00000263377	NM_058243.2	805	Gtg/Atg																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18273908	18273908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	262	621	0	ENST00000222254.8:c.1241A>G	p.Asn414Ser	p.N414S	ENST00000222254	NM_005027.3	414	aAt/aGt																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50905974	50905974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	295	910	2	ENST00000440232.2:c.946G>A	p.Asp316Asn	p.D316N	ENST00000440232	NM_002691.3	316	Gat/Aat																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52714556	52714556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	241	605	0	ENST00000322088.6:c.314G>A	p.Arg105Gln	p.R105Q	ENST00000322088	NM_014225.5	105	cGg/cAg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	281	634	5	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9547031	9547031	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	33	155	0	ENST00000353224.5:c.991G>A	p.Val331Met	p.V331M	ENST00000353224	NM_177990.2	331	Gtg/Atg																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46264364	46264364	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1452	293	903	0	ENST00000371998.3:c.1411C>A	p.Pro471Thr	p.P471T	ENST00000371998		471	Cct/Act																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41527509	41527509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	55	508	0	ENST00000263253.7:c.1400C>T	p.Ala467Val	p.A467V	ENST00000263253	NM_001429.3	467	gCc/gTc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41545119	41545119	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	269	707	0	ENST00000263253.7:c.2319G>T	p.Gln773His	p.Q773H	ENST00000263253	NM_001429.3	773	caG/caT																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41573122	41573122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	166	504	0	ENST00000263253.7:c.5407G>A	p.Val1803Met	p.V1803M	ENST00000263253	NM_001429.3	1803	Gtg/Atg																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39922290	39922290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	206	591	0	ENST00000378444.4:c.3882G>T	p.Lys1294Asn	p.K1294N	ENST00000378444	NM_001123385.1	1294	aaG/aaT																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412937	63412937	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201650985		P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1246	307	934	2	ENST00000330258.3:c.230G>A	p.Arg77Gln	p.R77Q	ENST00000330258	NM_152424.3	77	cGg/cAg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938599	76938599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	33	736	0	ENST00000373344.5:c.2149C>T	p.Pro717Ser	p.P717S	ENST00000373344	NM_000489.3	717	Cca/Tca																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76939031	76939031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	164	755	0	ENST00000373344.5:c.1717G>T	p.Gly573Cys	p.G573C	ENST00000373344	NM_000489.3	573	Ggt/Tgt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55225357	55225358	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	155	352	0	ENST00000275493.2:c.1214dup	p.Leu405PhefsTer8	p.L405Ffs*8	ENST00000275493	NM_005228.3	403	-/T																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	179	477	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741839	17741840	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	14	161	0	ENST00000250003.3:c.515dup	p.Gly173TrpfsTer105	p.G173Wfs*105	ENST00000250003	NM_002478.4	170	-/C																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	112	483	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9770516	9770517	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	253	593	1	ENST00000377346.4:c.8dup	p.Gly4TrpfsTer20	p.G4Wfs*20	ENST00000377346	NM_005026.3	1	-/C																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48018150	48018163	+	frameshift_variant	Frame_Shift_Del	DEL	TGATGGAACATTCA	TGATGGAACATTCA	-			P-0012988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	213	574	0	ENST00000234420.5:c.346_359del	p.Asp116ProfsTer15	p.D116Pfs*15	ENST00000234420	NM_000179.2	115	ttTGATGGAACATTCAtc/tttc																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	109	285	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151917707	151917707	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			147	15	115	0	ENST00000262189.6:c.3613A>T	p.Lys1205Ter	p.K1205*	ENST00000262189	NM_170606.2	1205	Aaa/Taa																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67070594	67070594	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	86	490	0	ENST00000412916.2:c.218G>A	p.Trp73Ter	p.W73*	ENST00000412916		73	tGg/tAg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29654689	29654690	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			652	82	387	0	ENST00000358273.4:c.5443dupC	p.Gln1815ProfsTer4	p.Q1815Pfs*4	ENST00000358273	NM_001042492.2	1814	cac/caCc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	499	510	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	671	946	3	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16082339	16082339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	307	692	0	ENST00000281043.3:c.153G>T	p.Lys51Asn	p.K51N	ENST00000281043	NM_005378.4	51	aaG/aaT																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66356133	66356133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	288	629	0	ENST00000273854.3:c.1364G>T	p.Arg455Leu	p.R455L	ENST00000273854	NM_004439.5	455	cGg/cTg																																												NEWRECORD																																		
FAM175A	0	MSKCC	GRCh37	4	84388683	84388683	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	196	552	0	ENST00000321945.7:c.605T>G	p.Phe202Cys	p.F202C	ENST00000321945	NM_139076.2	202	tTt/tGt																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106524634	106524634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	239	480	1	ENST00000359195.3:c.2795G>T	p.Cys932Phe	p.C932F	ENST00000359195	NM_002649.2	932	tGt/tTt																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98224163	98224163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	252	549	2	ENST00000331920.6:c.2678G>T	p.Arg893Leu	p.R893L	ENST00000331920	NM_000264.3	893	cGc/cTc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332729	70332729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	223	532	1	ENST00000373644.4:c.634G>A	p.Glu212Lys	p.E212K	ENST00000373644	NM_030625.2	212	Gag/Aag																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934917	9934917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	281	606	0	ENST00000330684.3:c.1373G>T	p.Gly458Val	p.G458V	ENST00000330684	NM_001134407.1	458	gGg/gTg																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89805351	89805351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	319	662	0	ENST00000389301.3:c.4199G>T	p.Arg1400Leu	p.R1400L	ENST00000389301	NM_000135.2	1400	cGt/cTt																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1222985	1222985	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	313	346	0	ENST00000326873.7:c.922T>G	p.Trp308Gly	p.W308G	ENST00000326873	NM_000455.4	308	Tgg/Ggg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2214594	2214594	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	412	507	0	ENST00000398665.3:c.1922A>T	p.Gln641Leu	p.Q641L	ENST00000398665	NM_032482.2	641	cAg/cTg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10600425	10600425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	748	885	1	ENST00000171111.5:c.1430del	p.Gly477AlafsTer23	p.G477Afs*23	ENST00000171111	NM_203500.1	477	gGc/gc																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149501602	149501602	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0012545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	184	351	0	ENST00000261799.4:c.2185del	p.His729MetfsTer4	p.H729Mfs*4	ENST00000261799	NM_002609.3	729	Cat/at																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0010313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	147	485	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0010313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	110	374	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66356248	66356248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202046693		P-0010313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	35	411	0	ENST00000273854.3:c.1249C>T	p.Arg417Trp	p.R417W	ENST00000273854	NM_004439.5	417	Cgg/Tgg																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57864610	57864610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	97	913	0	ENST00000228682.2:c.2087C>A	p.Ala696Asp	p.A696D	ENST00000228682	NM_005269.2	696	gCt/gAt																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66931256	66931256	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	37	435	0	ENST00000374690.3:c.1898A>C	p.Lys633Thr	p.K633T	ENST00000374690	NM_000044.3	633	aAg/aCg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	69	479	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	101	531	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	100	453	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	59	413	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55131142	55131142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	81	439	1	ENST00000257290.5:c.685G>A	p.Glu229Lys	p.E229K	ENST00000257290	NM_006206.4	229	Gaa/Aaa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420268	49420268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	104	499	1	ENST00000301067.7:c.15481G>A	p.Glu5161Lys	p.E5161K	ENST00000301067	NM_003482.3	5161	Gag/Aag																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43622056	43622056	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	58	365	0	ENST00000355710.3:c.3073G>C	p.Asp1025His	p.D1025H	ENST00000355710	NM_020975.4	1025	Gac/Cac																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118376332	118376332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	93	512	0	ENST00000534358.1:c.9725C>A	p.Thr3242Asn	p.T3242N	ENST00000534358	NM_005933.3	3242	aCc/aAc																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28610172	28610172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	77	353	0	ENST00000241453.7:c.1318C>G	p.Gln440Glu	p.Q440E	ENST00000241453	NM_004119.2	440	Caa/Gaa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28931694	28931694	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			491	57	340	0	ENST00000282397.4:c.2245C>T	p.Gln749Ter	p.Q749*	ENST00000282397	NM_002019.4	749	Caa/Taa																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061226	38061226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	83	478	0	ENST00000250448.2:c.763G>A	p.Glu255Lys	p.E255K	ENST00000250448	NM_004496.3	255	Gag/Aag																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2210632	2210632	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	75	420	0	ENST00000398665.3:c.1129G>C	p.Glu377Gln	p.E377Q	ENST00000398665	NM_032482.2	377	Gag/Cag																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5258124	5258124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			675	75	491	0	ENST00000357368.4:c.610G>C	p.Glu204Gln	p.E204Q	ENST00000357368	NM_002850.3	204	Gaa/Caa																																												NEWRECORD																																		
UPF1	0	MSKCC	GRCh37	19	18956879	18956879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	87	520	1	ENST00000262803.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000262803	NM_002911.3	108	Gat/Tat																																												NEWRECORD																																		
MLL4	0	MSKCC	GRCh37	19	36221618	36221618	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	117	609	0	ENST00000222270.7:c.5287C>G	p.Leu1763Val	p.L1763V	ENST00000222270	NM_014727.1	1763	Ctg/Gtg																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26029156	26029156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	70	420	0	ENST00000435504.4:c.194G>C	p.Arg65Thr	p.R65T	ENST00000435504		65	aGa/aCa																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40944455	40944455	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	102	544	0	ENST00000373198.4:c.2047G>A	p.Asp683Asn	p.D683N	ENST00000373198	NM_133170.3	683	Gac/Aac																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71050211	71050211	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	32	263	0	ENST00000318789.4:c.975-1G>A		p.X325_splice	ENST00000318789	NM_032682.5	325																																													NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56161166	56161166	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	49	297	0	ENST00000399503.3:c.1036-1G>C		p.X346_splice	ENST00000399503	NM_005921.1	346																																													NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56170986	56170987	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	33	230	0	ENST00000399503.3:c.1816dup	p.Ser606PhefsTer40	p.S606Ffs*40	ENST00000399503	NM_005921.1	605	aat/aaTt																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39933823	39933823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	82	622	0	ENST00000378444.4:c.776C>T	p.Ser259Leu	p.S259L	ENST00000378444	NM_001123385.1	259	tCg/tTg																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765547	66765547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014479-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	120	597	0	ENST00000374690.3:c.559G>C	p.Glu187Gln	p.E187Q	ENST00000374690	NM_000044.3	187	Gag/Cag																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1445	200	588	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	632	480	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527847	157527847	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	94	366	0	ENST00000346085.5:c.5572G>C	p.Glu1858Gln	p.E1858Q	ENST00000346085	NM_020732.3	1858	Gag/Cag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	58	351	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc																																												NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1196	67	377	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157511274	157511274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	67	403	0	ENST00000346085.5:c.3792G>A	p.Met1264Ile	p.M1264I	ENST00000346085	NM_020732.3	1264	atG/atA																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042185	42042185	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1350	179	971	0	ENST00000219905.7:c.6380C>G	p.Ser2127Ter	p.S2127*	ENST00000219905	NM_001164273.1	2127	tCa/tGa																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100611144	100611144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	106	634	0	ENST00000308731.7:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000308731	NM_000061.2	488	Gag/Aag																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49027140	49027141	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0009824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	340	491	0	ENST00000267163.4:c.1709_1710dup	p.Asp571LeufsTer41	p.D571Lfs*41	ENST00000267163	NM_000321.2	569	-/TT																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	20	86	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	103	365	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	65	313	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																													NEWRECORD																																		
NFKBIA	0	MSKCC	GRCh37	14	35873835	35873835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	37	152	0	ENST00000216797.5:c.16G>A	p.Glu6Lys	p.E6K	ENST00000216797	NM_020529.2	6	Gag/Aag																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16242679	16242679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	205	431	1	ENST00000375759.3:c.1300C>T	p.Pro434Ser	p.P434S	ENST00000375759	NM_015001.2	434	Ccc/Tcc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120468180	120468180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	44	214	0	ENST00000256646.2:c.4259C>T	p.Thr1420Ile	p.T1420I	ENST00000256646	NM_024408.3	1420	aCc/aTc																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225370675	225370675	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	37	232	0	ENST00000264414.4:c.1204G>A	p.Gly402Arg	p.G402R	ENST00000264414	NM_003590.4	402	Ggg/Agg																																												NEWRECORD																																		
SOX2	0	MSKCC	GRCh37	3	181431100	181431100	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	25	137	0	ENST00000325404.1:c.952T>G	p.Ter318GlyextTer27	p.*318Gext*27	ENST00000325404	NM_003106.3	318	Tga/Gga																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187535490	187535490	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	26	168	0	ENST00000441802.2:c.9084T>A	p.Tyr3028Ter	p.Y3028*	ENST00000441802	NM_005245.3	3028	taT/taA																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187540887	187540887	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	43	271	0	ENST00000441802.2:c.6853C>T	p.Gln2285Ter	p.Q2285*	ENST00000441802	NM_005245.3	2285	Cag/Tag																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149459867	149459867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	33	203	0	ENST00000286301.3:c.340G>A	p.Glu114Lys	p.E114K	ENST00000286301	NM_005211.3	114	Gag/Aag																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50459558	50459558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	38	197	0	ENST00000331340.3:c.847C>T	p.Leu283Phe	p.L283F	ENST00000331340	NM_006060.4	283	Ctt/Ttt																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135797229	135797229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	191	318	0	ENST00000298552.3:c.640G>A	p.Glu214Lys	p.E214K	ENST00000298552	NM_001162426.1	214	Gag/Aag																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139400050	139400050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	96	337	0	ENST00000277541.6:c.4298G>A	p.Gly1433Glu	p.G1433E	ENST00000277541	NM_017617.3	1433	gGg/gAg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412248	139412248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	155	368	0	ENST00000277541.6:c.1397C>T	p.Thr466Ile	p.T466I	ENST00000277541	NM_017617.3	466	aCc/aTc																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64128011	64128011	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	55	302	0	ENST00000334205.4:c.409G>C	p.Glu137Gln	p.E137Q	ENST00000334205	NM_003942.2	137	Gag/Cag																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64572548	64572548	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	45	227	0	ENST00000337652.1:c.1323G>A	p.Trp441Ter	p.W441*	ENST00000337652	NM_130803.2	441	tgG/tgA																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108196836	108196836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	55	271	0	ENST00000278616.4:c.6859G>A	p.Gly2287Arg	p.G2287R	ENST00000278616	NM_000051.3	2287	Gga/Aga																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42041397	42041397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1216	132	653	0	ENST00000219905.7:c.5592G>A	p.Met1864Ile	p.M1864I	ENST00000219905	NM_001164273.1	1864	atG/atA																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821176	72821176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	153	601	1	ENST00000268489.5:c.10999G>A	p.Asp3667Asn	p.D3667N	ENST00000268489	NM_006885.3	3667	Gat/Aat																																												NEWRECORD																																		
STAT5A	0	MSKCC	GRCh37	17	40441451	40441451	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	58	365	0	ENST00000345506.4:c.22C>T	p.Gln8Ter	p.Q8*	ENST00000345506	NM_003152.3	8	Cag/Tag																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56448279	56448279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	26	164	0	ENST00000407977.2:c.368C>T	p.Ala123Val	p.A123V	ENST00000407977		123	gCt/gTt																																												NEWRECORD																																		
DNAJB1	0	MSKCC	GRCh37	19	14628978	14628978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	53	471	0	ENST00000254322.2:c.184G>A	p.Glu62Lys	p.E62K	ENST00000254322	NM_006145.1	62	Gag/Aag																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39690033	39690033	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	27	139	0	ENST00000361337.2:c.59-1G>A		p.X20_splice	ENST00000361337	NM_003286.2	20																																													NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41306677	41306677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	44	285	0	ENST00000373198.4:c.982C>T	p.Arg328Cys	p.R328C	ENST00000373198	NM_133170.3	328	Cgc/Tgc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045671	47045671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	31	268	0	ENST00000329236.7:c.2318C>T	p.Pro773Leu	p.P773L	ENST00000329236	NM_001204466.1	773	cCt/cTt																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938551	76938551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	78	452	0	ENST00000373344.5:c.2197G>A	p.Glu733Lys	p.E733K	ENST00000373344	NM_000489.3	733	Gaa/Aaa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139400250	139400251	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	60	163	0	ENST00000277541.6:c.4097dup	p.Arg1368AlafsTer37	p.R1368Afs*37	ENST00000277541	NM_017617.3	1366	ggc/ggGc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	551	500	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0008853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	57	178	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185146452	185146452	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	139	290	0	ENST00000265026.3:c.83A>T	p.Gln28Leu	p.Q28L	ENST00000265026	NM_004721.4	28	cAa/cTa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435577	18435577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	97	325	0	ENST00000266497.5:c.562C>T	p.Pro188Ser	p.P188S	ENST00000266497		188	Ccg/Tcg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173624	112173625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	181	335	0	ENST00000257430.4:c.2336dup	p.Leu779PhefsTer9	p.L779Ffs*9	ENST00000257430	NM_000038.5	778	aat/aaTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	149	391	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																												NEWRECORD																																		
TMEM127	0	MSKCC	GRCh37	2	96919761	96919761	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	106	349	1	ENST00000258439.3:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000258439	NM_001193304.2	168	Cag/Tag																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139396916	139396916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	55	192	0	ENST00000277541.6:c.5192C>T	p.Pro1731Leu	p.P1731L	ENST00000277541	NM_017617.3	1731	cCg/cTg																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102206861	102206861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	233	606	0	ENST00000263464.3:c.1489G>C	p.Asp497His	p.D497H	ENST00000263464	NM_001165.4	497	Gat/Cat																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28964121	28964121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	135	417	0	ENST00000282397.4:c.1781C>G	p.Thr594Arg	p.T594R	ENST00000282397	NM_002019.4	594	aCa/aGa																																												NEWRECORD																																		
RAD51D	0	MSKCC	GRCh37	17	33430524	33430524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	152	515	1	ENST00000335858.7:c.280G>A	p.Asp94Asn	p.D94N	ENST00000335858	NM_133629.2	94	Gac/Aac																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15271876	15271878	+	frameshift_variant	Frame_Shift_Ins	INS	GGC	GGC	AGAA			P-0011060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	59	248	0	ENST00000263388.2:c.6561_6563delinsTTCT	p.Pro2188SerfsTer54	p.P2188Sfs*54	ENST00000263388	NM_000435.2	2187	ctGCCa/ctTTCTa																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	326	422	2	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	83	191	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	168	466	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	13	96	0	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																												NEWRECORD																																		
IDH2	3418	MSKCC	GRCh37	15	90631918	90631918	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs747216375		P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	201	693	1	ENST00000330062.3:c.435del	p.Thr146LeufsTer15	p.T146Lfs*15	ENST00000330062	NM_002168.2	145	ggG/gg																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149983228	149983228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	191	505	0	ENST00000253339.5:c.3030delT	p.Phe1010LeufsTer10	p.F1010Lfs*10	ENST00000253339		1010	ttT/tt																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90958479	90958480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	137	383	0	ENST00000265433.3:c.1958dup	p.Leu654AlafsTer5	p.L654Afs*5	ENST00000265433	NM_002485.4	653	aag/aaAg																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45374914	45374914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	482	546	0	ENST00000262160.6:c.929G>C	p.Arg310Thr	p.R310T	ENST00000262160	NM_005901.5	310	aGg/aCg																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	253	704	0	ENST00000397062.3:c.246A>C	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaC																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119562194	119562194	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	186	553	0	ENST00000316626.5:c.1142C>G	p.Ser381Ter	p.S381*	ENST00000316626		381	tCa/tGa																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128200694	128200694	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	128	627	0	ENST00000341105.2:c.1111A>G	p.Asn371Asp	p.N371D	ENST00000341105	NM_032638.4	371	Aac/Gac																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1803435	1803435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	214	625	1	ENST00000260795.2:c.704G>A	p.Gly235Asp	p.G235D	ENST00000260795		235	gGc/gAc																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13935556	13935556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	131	379	0	ENST00000405192.2:c.1300A>G	p.Met434Val	p.M434V	ENST00000405192	NM_001163147.1	434	Atg/Gtg																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101891188	101891188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	184	535	0	ENST00000374994.4:c.149C>T	p.Thr50Ile	p.T50I	ENST00000374994	NM_004612.2	50	aCa/aTa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139409974	139409974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	206	541	1	ENST00000277541.6:c.1864G>A	p.Asp622Asn	p.D622N	ENST00000277541	NM_017617.3	622	Gac/Aac																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77064580	77064580	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs199690644		P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	236	726	0	ENST00000356341.3:c.836+1G>T		p.X279_splice	ENST00000356341	NM_002576.4	279																																													NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46211461	46211461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	133	387	1	ENST00000334344.6:c.427C>T	p.Arg143Cys	p.R143C	ENST00000334344	NM_152641.2	143	Cgt/Tgt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49433934	49433934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	150	444	0	ENST00000301067.7:c.7619A>G	p.Gln2540Arg	p.Q2540R	ENST00000301067	NM_003482.3	2540	cAg/cGg																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21563354	21563354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	137	753	0	ENST00000382592.4:c.565A>G	p.Thr189Ala	p.T189A	ENST00000382592	NM_014572.2	189	Acc/Gcc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49037892	49037892	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	116	561	0	ENST00000267163.4:c.2132T>C	p.Ile711Thr	p.I711T	ENST00000267163	NM_000321.2	711	aTa/aCa																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67473732	67473732	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	199	607	0	ENST00000327367.4:c.812T>C	p.Leu271Pro	p.L271P	ENST00000327367	NM_005902.3	271	cTa/cCa																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67644994	67644994	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	195	458	1	ENST00000264010.4:c.259G>T	p.Glu87Ter	p.E87*	ENST00000264010	NM_006565.3	87	Gag/Tag																																												NEWRECORD																																		
CALR	0	MSKCC	GRCh37	19	13050447	13050447	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	217	723	0	ENST00000316448.5:c.397+2T>C		p.X133_splice	ENST00000316448	NM_004343.3	133																																													NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11217275	11217304	+	inframe_deletion	In_Frame_Del	DEL	TCCATTTTCTTGTCATAGGCCACAAGGGCA	TCCATTTTCTTGTCATAGGCCACAAGGGCA	-			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	166	699	1	ENST00000361445.4:c.4374_4403del	p.Ala1459_Asp1468del	p.A1459_D1468del	ENST00000361445	NM_004958.3	1458	gaTGCCCTTGTGGCCTATGACAAGAAAATGGAc/gac																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589220	67589267	+	inframe_deletion	In_Frame_Del	DEL	AATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCA	AATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCA	-			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	145	597	0	ENST00000274335.5:c.1212_1259del	p.Ile405_Leu420del	p.I405_L420del	ENST00000274335		403	gAATTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAaa/gaa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49435187	49435187	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	99	235	0	ENST00000301067.7:c.6366del	p.Thr2123ProfsTer21	p.T2123Pfs*21	ENST00000301067	NM_003482.3	2122	ccC/cc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11303227	11303228	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	232	591	0	ENST00000361445.4:c.1355dup	p.Leu452PhefsTer20	p.L452Ffs*20	ENST00000361445	NM_004958.3	452	ttg/ttTg																																												NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48881488	48881489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	119	495	0	ENST00000267163.4:c.219_220dup	p.Ala74GlufsTer4	p.A74Efs*4	ENST00000267163	NM_000321.2	70	-/AG																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121432071	121432073	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0011222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	226	642	0	ENST00000257555.6:c.824_826delAAG	p.Glu275del	p.E275del	ENST00000257555		273	aAAGaa/aaa																																												NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52682399	52682400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000368-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	518	390	0	ENST00000394830.3:c.773dup	p.Asn258LysfsTer6	p.N258Kfs*6	ENST00000394830	NM_018313.4	258	aat/aaAt																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			343	114	172	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	609	285	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	391	169	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	259	258	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	291	340	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																												NEWRECORD																																		
PHOX2B	0	MSKCC	GRCh37	4	41749500	41749500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	97	271	0	ENST00000226382.2:c.295C>T	p.Arg99Trp	p.R99W	ENST00000226382	NM_003924.3	99	Cgg/Tgg																																												NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	127	124	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27056236	27056236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			768	68	236	0	ENST00000324856.7:c.1232C>T	p.Pro411Leu	p.P411L	ENST00000324856	NM_006015.4	411	cCg/cTg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156845390	156845390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1355	349	289	0	ENST00000524377.1:c.1433C>A	p.Pro478His	p.P478H	ENST00000524377	NM_002529.3	478	cCc/cAc																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241676953	241676953	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1338	291	362	0	ENST00000366560.3:c.328T>C	p.Tyr110His	p.Y110H	ENST00000366560	NM_000143.3	110	Tat/Cat																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29543689	29543689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			589	318	315	0	ENST00000389048.3:c.1474G>T	p.Gly492Cys	p.G492C	ENST00000389048	NM_004304.4	492	Ggc/Tgc																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227661393	227661393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	240	269	0	ENST00000305123.5:c.2062G>A	p.Ala688Thr	p.A688T	ENST00000305123	NM_005544.2	688	Gcc/Acc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	28	132	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																												NEWRECORD																																		
SOX2	0	MSKCC	GRCh37	3	181430950	181430950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			548	338	337	0	ENST00000325404.1:c.802G>A	p.Gly268Arg	p.G268R	ENST00000325404	NM_003106.3	268	Ggg/Agg																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1803676	1803676	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	154	330	0	ENST00000260795.2:c.854T>C	p.Ile285Thr	p.I285T	ENST00000260795		285	aTc/aCc																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86649012	86649012	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	247	253	0	ENST00000274376.6:c.1292T>C	p.Ile431Thr	p.I431T	ENST00000274376	NM_002890.2	431	aTt/aCt																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056305	26056305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	306	313	0	ENST00000343677.2:c.352C>T	p.Pro118Ser	p.P118S	ENST00000343677	NM_005319.3	118	Ccc/Tcc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30676047	30676047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	293	272	0	ENST00000376406.3:c.2309C>T	p.Thr770Met	p.T770M	ENST00000376406	NM_014641.2	770	aCg/aTg																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152382214	152382214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	307	221	1	ENST00000206249.3:c.1324G>A	p.Gly442Arg	p.G442R	ENST00000206249	NM_000125.3	442	Gga/Aga																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90971013	90971013	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			657	479	351	0	ENST00000265433.3:c.1064G>T	p.Ser355Ile	p.S355I	ENST00000265433	NM_002485.4	355	aGc/aTc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145741917	145741917	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			784	127	217	0	ENST00000428558.2:c.586A>G	p.Ser196Gly	p.S196G	ENST00000428558	NM_004260.3	196	Agt/Ggt																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43598042	43598042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	267	292	0	ENST00000355710.3:c.590G>A	p.Cys197Tyr	p.C197Y	ENST00000355710	NM_020975.4	197	tGc/tAc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717730	89717730	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	237	233	0	ENST00000371953.3:c.755A>T	p.Asp252Val	p.D252V	ENST00000371953	NM_000314.4	252	gAt/gTt																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123310914	123310914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	364	346	0	ENST00000358487.5:c.514G>A	p.Ala172Thr	p.A172T	ENST00000358487	NM_000141.4	172	Gcc/Acc																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	416685	416685	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			623	389	272	0	ENST00000399788.2:c.3865C>T	p.Arg1289Ter	p.R1289*	ENST00000399788	NM_001042603.1	1289	Cga/Tga																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10274114	10274114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			537	297	321	1	ENST00000330684.3:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000330684	NM_001134407.1	52	cGa/cAa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15974847	15974847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	334	410	0	ENST00000268712.3:c.4028C>T	p.Thr1343Ile	p.T1343I	ENST00000268712	NM_006311.3	1343	aCc/aTc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15271546	15271546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			616	335	360	0	ENST00000263388.2:c.6893G>T	p.Ser2298Ile	p.S2298I	ENST00000263388	NM_000435.2	2298	aGc/aTc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41551013	41551013	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			761	139	299	0	ENST00000263253.7:c.3157G>T	p.Glu1053Ter	p.E1053*	ENST00000263253	NM_001429.3	1053	Gaa/Taa																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53222716	53222716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			782	318	342	0	ENST00000375401.3:c.4220A>G	p.Asp1407Gly	p.D1407G	ENST00000375401	NM_004187.3	1407	gAc/gGc																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26022274	26022274	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			795	411	370	0	ENST00000435504.4:c.383del	p.Lys128ArgfsTer39	p.K128Rfs*39	ENST00000435504		128	aAg/ag																																												NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			804	129	328	2	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																												NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157528825	157528825	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			620	85	210	0	ENST00000346085.5:c.6554del	p.Pro2185ArgfsTer8	p.P2185Rfs*8	ENST00000346085	NM_020732.3	2184	Ccc/cc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89690842	89690843	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	167	150	0	ENST00000371953.3:c.252_253dup	p.Val85GlufsTer15	p.V85Efs*15	ENST00000371953	NM_000314.4	83	-/AG																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49444452	49444453	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			551	132	219	0	ENST00000301067.7:c.2918dup	p.Leu973PhefsTer17	p.L973Ffs*17	ENST00000301067	NM_003482.3	973	ttg/ttTg																																												NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	258	314	0	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	68	86	0	ENST00000263377.2:c.3061delC	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41573051	41573052	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	272	253	0	ENST00000263253.7:c.5340dup	p.Ile1781HisfsTer102	p.I1781Hfs*102	ENST00000263253	NM_001429.3	1779	tgc/tgCc																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	245	511	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	52	234	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	158	379	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11141498	11141498	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	46	646	2	ENST00000344626.4:c.3480delG	p.Leu1161SerfsTer3	p.L1161Sfs*3	ENST00000344626	NM_003072.3	1159	Ggg/gg																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	193	498	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	275	1004	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	184	494	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga																																												NEWRECORD																																		
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	153	588	0	ENST00000227507.2:c.857C>T	p.Thr286Ile	p.T286I	ENST00000227507	NM_053056.2	286	aCa/aTa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1186	52	1165	4	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	187	561	9	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																												NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	56	690	1	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																												NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	158	418	0	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	57	235	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga																																												NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	196	659	2	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																												NEWRECORD																																		
NOTCH4	4855	MSKCC	GRCh37	6	32163553	32163554	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs777647776		P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	73	500	3	ENST00000375023.3:c.5672dup	p.Gly1892ArgfsTer24	p.G1892Rfs*24	ENST00000375023	NM_004557.3	1891	ggc/ggGc																																												NEWRECORD																																		
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	377	1055	0	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45422959	45422959	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	110	915	2	ENST00000262160.6:c.169C>T	p.Arg57Ter	p.R57*	ENST00000262160	NM_005901.5	57	Cga/Tga																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	293	678	0	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56436128	56436128	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	330	765	1	ENST00000407977.2:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000407977		337	Cga/Tga																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39617680	39617680	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	140	561	0	ENST00000262039.4:c.1869del	p.Phe623LeufsTer43	p.F623Lfs*43	ENST00000262039	NM_002647.2	622	Ttt/tt																																												NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40362447	40362447	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	144	974	0	ENST00000293328.3:c.1749del	p.Lys583AsnfsTer16	p.K583Nfs*16	ENST00000293328	NM_012448.3	583	aaA/aa																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78432379	78432379	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	133	378	0	ENST00000370768.2:c.472C>A	p.Gln158Lys	p.Q158K	ENST00000370768	NM_003902.3	158	Cag/Aag																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16085999	16085999	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	210	481	0	ENST00000281043.3:c.1175A>G	p.Gln392Arg	p.Q392R	ENST00000281043	NM_005378.4	392	cAg/cGg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1279557	1279557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	179	513	0	ENST00000310581.5:c.1979C>T	p.Ala660Val	p.A660V	ENST00000310581	NM_198253.2	660	gCa/gTa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176683975	176683975	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	295	858	0	ENST00000439151.2:c.4789A>T	p.Lys1597Ter	p.K1597*	ENST00000439151	NM_022455.4	1597	Aag/Tag																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140449215	140449215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	54	322	0	ENST00000288602.6:c.1864C>T	p.Pro622Ser	p.P622S	ENST00000288602	NM_004333.4	622	Cca/Tca																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151960177	151960177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	142	481	1	ENST00000262189.6:c.1223C>T	p.Thr408Met	p.T408M	ENST00000262189	NM_170606.2	408	aCg/aTg																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118347638	118347638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	149	629	0	ENST00000534358.1:c.3275C>T	p.Thr1092Ile	p.T1092I	ENST00000534358	NM_005933.3	1092	aCc/aTc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133242037	133242037	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	212	381	0	ENST00000320574.5:c.2320-1G>T		p.X774_splice	ENST00000320574	NM_006231.2	774																																													NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21557797	21557797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	299	732	0	ENST00000382592.4:c.2048G>A	p.Cys683Tyr	p.C683Y	ENST00000382592	NM_014572.2	683	tGc/tAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579470	7579470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	181	515	0	ENST00000269305.4:c.217G>A	p.Val73Met	p.V73M	ENST00000269305	NM_001126112.2	73	Gtg/Atg																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435622	56435622	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	124	340	0	ENST00000407977.2:c.1515T>A	p.Phe505Leu	p.F505L	ENST00000407977		505	ttT/ttA																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40713366	40713366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	301	632	0	ENST00000373198.4:c.4149G>T	p.Gln1383His	p.Q1383H	ENST00000373198	NM_133170.3	1383	caG/caT																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48652537	48652537	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	25	388	0	ENST00000376670.3:c.1208C>G	p.Thr403Ser	p.T403S	ENST00000376670	NM_002049.3	403	aCc/aGc																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65305440	65305440	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	76	590	0	ENST00000342505.4:c.2688del	p.Glu897LysfsTer14	p.E897Kfs*14	ENST00000342505	NM_002227.2	896	ccC/cc																																												NEWRECORD																																		
MCL1	0	MSKCC	GRCh37	1	150549852	150549859	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	TATCTTAT	TATCTTAT	-			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	175	561	0	ENST00000369026.2:c.1045_1052del	p.Ile349AlafsTer4	p.I349Afs*4	ENST00000369026	NM_021960.4	349	ATAAGATAg/g																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63845628	63845628	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	111	275	0	ENST00000279873.7:c.1370del	p.Asn457MetfsTer22	p.N457Mfs*22	ENST00000279873	NM_032199.2	456	gAa/ga																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49927422	49927422	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1291	248	1136	1	ENST00000296474.3:c.3882del	p.Phe1294LeufsTer26	p.F1294Lfs*26	ENST00000296474	NM_002447.2	1294	ttT/tt																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112020818	112020819	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1384	491	1031	0	ENST00000368678.4:c.752dupC	p.Gln252ThrfsTer7	p.Q252Tfs*7	ENST00000368678		251	cca/ccCa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830620	72830620	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	422	1166	0	ENST00000268489.5:c.5961del	p.Cys1988AlafsTer9	p.C1988Afs*9	ENST00000268489	NM_006885.3	1987	tcC/tc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76874316	76874316	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	39	919	0	ENST00000373344.5:c.5406del	p.Lys1802AsnfsTer10	p.K1802Nfs*10	ENST00000373344	NM_000489.3	1802	aaA/aa																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56490980	56490980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000342-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	79	265	0	ENST00000267101.3:c.2426A>G	p.Gln809Arg	p.Q809R	ENST00000267101	NM_001982.3	809	cAg/cGg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000342-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	243	521	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41749547	41749547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000342-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			769	124	669	0	ENST00000301178.4:c.1472G>C	p.Arg491Thr	p.R491T	ENST00000301178	NM_021913.4	491	aGa/aCa																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30064394	30064394	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000342-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	28	291	0	ENST00000338641.4:c.958C>T	p.Gln320Ter	p.Q320*	ENST00000338641	NM_000268.3	320	Cag/Tag																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120206	70120207	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000342-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	27	373	0	ENST00000245479.2:c.1212dupC	p.Ser405GlnfsTer173	p.S405Qfs*173	ENST00000245479	NM_000346.3	403	agc/agCc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593555	48593563	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGGTTAGT	AAGGTTAGT	-			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	53	249	0	ENST00000342988.3:c.1306_1308+6del		p.X436_splice	ENST00000342988	NM_005359.5	436																																													NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152027709	152027710	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	217	582	0	ENST00000262189.6:c.365_366del	p.Ser122CysfsTer9	p.S122Cfs*9	ENST00000262189	NM_170606.2	122	tCT/t																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711879	89711882	+	frameshift_variant	Frame_Shift_Del	DEL	TAAC	TAAC	-			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	74	341	0	ENST00000371953.3:c.499_502del	p.Thr167PhefsTer15	p.T167Ffs*15	ENST00000371953	NM_000314.4	166	gTAACt/gt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593537	48593551	+	inframe_deletion	In_Frame_Del	DEL	TACCCAAGTGCATAT	TACCCAAGTGCATAT	-			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	55	294	0	ENST00000342988.3:c.1288_1302del	p.Tyr430_Tyr434del	p.Y430_Y434del	ENST00000342988	NM_005359.5	430	TACCCAAGTGCATAT/-																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23641028	23641028	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	110	433	0	ENST00000261584.4:c.2447del	p.Phe816SerfsTer35	p.F816Sfs*35	ENST00000261584	NM_024675.3	816	tTc/tc																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119155674	119155687	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTAGGTGGAACGG	CCTAGGTGGAACGG	-			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	77	410	0	ENST00000264033.4:c.1432-3_1442del		p.X478_splice	ENST00000264033	NM_005188.3	478																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578184	7578187	+	frameshift_variant	Frame_Shift_Del	DEL	GGCT	GGCT	-			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	116	498	0	ENST00000269305.4:c.662_665del	p.Glu221GlyfsTer25	p.E221Gfs*25	ENST00000269305	NM_001126112.2	221	gAGCCg/gg																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36171704	36171705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	88	378	0	ENST00000300305.3:c.859_860dupTA	p.Leu288ThrfsTer24	p.L288Tfs*24	ENST00000300305		287	tac/taTAc																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227659796	227659797	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	64	281	0	ENST00000305123.5:c.3658dup	p.Arg1220ProfsTer5	p.R1220Pfs*5	ENST00000305123	NM_005544.2	1220	cgc/cCgc																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133748426	133748427	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	CC			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	32	213	0	ENST00000318560.5:c.1085+2_1085+3insCC		p.X362_splice	ENST00000318560	NM_005157.4	362																																													NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46287209	46287209	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	75	277	0	ENST00000334344.6:c.5155del	p.Thr1719LeufsTer2	p.T1719Lfs*2	ENST00000334344	NM_152641.2	1718	ccA/cc																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48650794	48650800	+	frameshift_variant	Frame_Shift_Del	DEL	CCACTAC	CCACTAC	-			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	151	332	0	ENST00000376670.3:c.664_670del	p.His222TyrfsTer11	p.H222Yfs*11	ENST00000376670	NM_002049.3	221	ggCCACTAC/gg																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21549497	21549499	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	14	73	0	ENST00000382592.4:c.2777_2779del	p.Ile926del	p.I926del	ENST00000382592	NM_014572.2	926	aTCAac/aac																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435669	56435675	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCCTG	CCCCCTG	-			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	35	170	0	ENST00000407977.2:c.1462_1468del	p.Gln488SerfsTer12	p.Q488Sfs*12	ENST00000407977		488	CAGGGGGtc/tc																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67482759	67482760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	107	443	0	ENST00000327367.4:c.1166_1167dup	p.Thr390Ter	p.T390*	ENST00000327367	NM_005902.3	388	act/acTGt																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71101740	71101741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	114	403	0	ENST00000318789.4:c.457dup	p.Gln153ProfsTer17	p.Q153Pfs*17	ENST00000318789	NM_032682.5	153	cag/cCag																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42866492	42866494	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1184	141	608	0	ENST00000398585.3:c.138_140del	p.Ala47del	p.A47del	ENST00000398585	NM_001135099.1	46	ccAGCt/cct																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49725180	49725181	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	35	213	0	ENST00000449682.2:c.242+2_242+3del		p.X81_splice	ENST00000449682	NM_020998.3	81																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577563	7577566	+	protein_altering_variant	In_Frame_Del	DEL	TGTT	TGTT	A			P-0007782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	76	419	0	ENST00000269305.4:c.715_718delinsT	p.Asn239_Ser240delinsCys	p.N239_S240delinsC	ENST00000269305	NM_001126112.2	239	AACAgt/Tgt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	105	545	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	69	342	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	24	83	0	ENST00000304494.5:c.188T>A	p.Leu63Gln	p.L63Q	ENST00000304494	NM_000077.4	63	cTg/cAg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971170	21971170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	24	83	0	ENST00000304494.5:c.188T>A	p.Leu63Gln	p.L63Q	ENST00000304494	NM_000077.4	63	cTg/cAg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9943745	9943745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	36	265	0	ENST00000330684.3:c.1196G>A	p.Cys399Tyr	p.C399Y	ENST00000330684	NM_001134407.1	399	tGt/tAt																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56492895	56492896	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	22	133	0	ENST00000407977.2:c.43dup	p.Trp15LeufsTer25	p.W15Lfs*25	ENST00000407977		15	tgg/tTgg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			474	37	338	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41275239	41275239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			490	43	395	1	ENST00000349496.5:c.1405C>T	p.Arg469Cys	p.R469C	ENST00000349496	NM_001904.3	469	Cgt/Tgt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821530	72821530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			863	63	830	0	ENST00000268489.5:c.10645G>A	p.Glu3549Lys	p.E3549K	ENST00000268489	NM_006885.3	3549	Gag/Aag																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575116	48575116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			568	47	417	0	ENST00000342988.3:c.310C>T	p.Leu104Phe	p.L104F	ENST00000342988	NM_005359.5	104	Ctt/Ttt																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591129	67591130	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAG			P-0011084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			500	33	341	0	ENST00000274335.5:c.1724_1726dup	p.Lys575dup	p.K575dup	ENST00000274335		575	-/AAG																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119694	70119694	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			779	140	803	0	ENST00000245479.2:c.698del	p.Gly233AlafsTer20	p.G233Afs*20	ENST00000245479	NM_000346.3	232	caG/ca																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0006707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	129	467	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099422	27099422	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	74	705	0	ENST00000324856.7:c.3659T>C	p.Met1220Thr	p.M1220T	ENST00000324856	NM_006015.4	1220	aTg/aCg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578510	7578510	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	488	753	0	ENST00000269305.4:c.420del	p.Cys141AlafsTer29	p.C141Afs*29	ENST00000269305	NM_001126112.2	140	acC/ac																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114911638	114911639	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0006707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	322	706	0	ENST00000543371.1:c.1157_1158dupGG	p.Arg387GlyfsTer105	p.R387Gfs*105	ENST00000543371	NM_001198531.1	386	cgg/cGGgg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174782	112174783	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	54	652	0	ENST00000257430.4:c.3495dup	p.Tyr1166IlefsTer2	p.Y1166Ifs*2	ENST00000257430	NM_000038.5	1164	ata/atAa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692849	89692849	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			148	68	192	2	ENST00000371953.3:c.333G>A	p.Trp111Ter	p.W111*	ENST00000371953	NM_000314.4	111	tgG/tgA																																												NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152382152	152382154	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0014579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	123	307	0	ENST00000206249.3:c.1265_1267del	p.Val422del	p.V422del	ENST00000206249	NM_000125.3	421	aTGGtg/atg																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	223	529	1	ENST00000206249.3:c.1609T>C	p.Tyr537His	p.Y537H	ENST00000206249	NM_000125.3	537	Tat/Cat																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27056181	27056181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	207	535	0	ENST00000324856.7:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000324856	NM_006015.4	393	Cag/Tag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107089	27107099	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGCCCGCGC	GCTGCCCGCGC	-			P-0014579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	214	364	0	ENST00000324856.7:c.6705_6715del	p.Arg2236CysfsTer38	p.R2236Cfs*38	ENST00000324856	NM_006015.4	2234	GCTGCCCGCGCg/g																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692864	89692865	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			178	72	217	0	ENST00000371953.3:c.350dupA	p.Asn117LysfsTer9	p.N117Kfs*9	ENST00000371953	NM_000314.4	116	-/A																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123274777	123274777	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	210	554	0	ENST00000358487.5:c.1141T>G	p.Tyr381Asp	p.Y381D	ENST00000358487	NM_000141.4	381	Tac/Gac																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123274785	123274785	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	200	523	0	ENST00000358487.5:c.1133T>G	p.Ile378Arg	p.I378R	ENST00000358487	NM_000141.4	378	aTa/aGa																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589146	67589147	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	67	190	0	ENST00000274335.5:c.1137dup	p.Leu380IlefsTer15	p.L380Ifs*15	ENST00000274335		378	-/A																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589663	67589663	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0014579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	59	173	0	ENST00000274335.5:c.1425+1G>T		p.X475_splice	ENST00000274335		475																																													NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209457	98209457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014579-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	243	550	1	ENST00000331920.6:c.4081G>A	p.Val1361Met	p.V1361M	ENST00000331920	NM_000264.3	1361	Gtg/Atg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	168	447	2	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	73	179	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66905909	66905909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	67	173	1	ENST00000374690.3:c.1826G>T	p.Arg609Met	p.R609M	ENST00000374690	NM_000044.3	609	aGg/aTg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106657	27106657	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	256	416	0	ENST00000324856.7:c.6268del	p.His2090ThrfsTer45	p.H2090Tfs*45	ENST00000324856	NM_006015.4	2090	Cac/ac																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89815086	89815086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	164	413	0	ENST00000389301.3:c.3329A>G	p.His1110Arg	p.H1110R	ENST00000389301	NM_000135.2	1110	cAc/cGc																																												NEWRECORD																																		
SOS1	0	MSKCC	GRCh37	2	39285837	39285838	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACTGGGAGAGATAAAGGGTTTCTTCGCTTCCTCTT			P-0014246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	52	364	0	ENST00000402219.2:c.286_321dup	p.Lys96_Val107dup	p.K96_V107dup	ENST00000402219	NM_005633.3	96	-/AAGAGGAAGCGAAGAAACCCTTTATCTCTCCCAGTA																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52662922	52662923	+	missense_variant	Missense_Mutation	DNP	CT	CT	GG			P-0014246-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	89	321	0	ENST00000394830.3:c.1430_1431delinsCC	p.Gln477Pro	p.Q477P	ENST00000394830	NM_018313.4	477	cAG/cCC																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0000628-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	3348	310	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000628-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	626	437	1	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55151625	55151625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000628-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	875	601	0	ENST00000257290.5:c.2411G>A	p.Arg804Gln	p.R804Q	ENST00000257290	NM_006206.4	804	cGa/cAa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47143040	47143041	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTCCACT			P-0000628-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			841	244	436	0	ENST00000409792.3:c.4918-2_4922dupAGTGGAC	p.Asn1643AspfsTer25	p.N1643Dfs*25	ENST00000409792	NM_014159.6	1641	act/acAGTGGACt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27088787	27088788	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	122	277	0	ENST00000324856.7:c.2402dupG	p.Gln802SerfsTer15	p.Q802Sfs*15	ENST00000324856	NM_006015.4	799	cag/caGg																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	125	185	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	125	185	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43817936	43817936	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	113	470	0	ENST00000372470.3:c.1615C>A	p.Leu539Ile	p.L539I	ENST00000372470	NM_005373.2	539	Cta/Ata																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156843526	156843526	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	103	362	0	ENST00000524377.1:c.952A>T	p.Asn318Tyr	p.N318Y	ENST00000524377	NM_002529.3	318	Aat/Tat																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16085918	16085918	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs150742977		P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	106	228	0	ENST00000281043.3:c.1094C>A	p.Pro365Gln	p.P365Q	ENST00000281043	NM_005378.4	365	cCa/cAa																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29551342	29551342	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	119	276	0	ENST00000389048.3:c.1288T>A	p.Ser430Thr	p.S430T	ENST00000389048	NM_004304.4	430	Tcc/Acc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55127579	55127579	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	58	116	0	ENST00000257290.5:c.367G>C	p.Asp123His	p.D123H	ENST00000257290	NM_006206.4	123	Gac/Cac																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117706968	117706968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	378	330	0	ENST00000368508.3:c.2182G>T	p.Val728Leu	p.V728L	ENST00000368508	NM_002944.2	728	Gtg/Ttg																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93624510	93624510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	346	234	1	ENST00000375746.1:c.601G>T	p.Gly201Cys	p.G201C	ENST00000375746	NM_001174167.1	201	Ggc/Tgc																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77066821	77066821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	188	379	0	ENST00000356341.3:c.664A>G	p.Ile222Val	p.I222V	ENST00000356341	NM_002576.4	222	Att/Gtt																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47699411	47699411	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	123	233	0	ENST00000347630.2:c.97T>G	p.Ser33Ala	p.S33A	ENST00000347630	NM_001007230.1	33	Tcc/Gcc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10600393	10600393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	372	453	0	ENST00000171111.5:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000171111	NM_203500.1	488	Gag/Aag																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41726580	41726580	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	129	338	0	ENST00000301178.4:c.125G>A	p.Gly42Glu	p.G42E	ENST00000301178	NM_021913.4	42	gGg/gAg																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111907683	111907684	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	174	305	0	ENST00000393256.3:c.458_459insTG	p.Arg154GlyfsTer17	p.R154Gfs*17	ENST00000393256	NM_006538.4	153	cgg/cGTgg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579472	7579473	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0003347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	188	186	0	ENST00000269305.4:c.214_215delinsG	p.Pro72AlafsTer51	p.P72Afs*51	ENST00000269305	NM_001126112.2	72	CCc/Gc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0009469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	270	437	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACCCCC			P-0009469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	150	349	0	ENST00000275493.2:c.2311_2319dup	p.Asn771_His773dup	p.N771_H773dup	ENST00000275493	NM_005228.3	771	gac/gACAACCCCCac																																												NEWRECORD																																		
CENPA	0	MSKCC	GRCh37	2	27015035	27015035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	259	489	0	ENST00000335756.4:c.137G>A	p.Gly46Asp	p.G46D	ENST00000335756	NM_001809.3	46	gGt/gAt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	197	389	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1660	145	865	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49936094	49936094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1373	214	776	0	ENST00000296474.3:c.1576G>T	p.Gly526Cys	p.G526C	ENST00000296474	NM_002447.2	526	Ggc/Tgc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120925	115120925	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	268	427	0	ENST00000257566.3:c.81C>A	p.Asp27Glu	p.D27E	ENST00000257566	NM_016569.3	27	gaC/gaA																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65544655	65544655	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	446	546	2	ENST00000358664.4:c.271C>T	p.Gln91Ter	p.Q91*	ENST00000358664	NM_002382.4	91	Cag/Tag																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40744835	40744835	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	247	555	0	ENST00000392038.2:c.685A>G	p.Met229Val	p.M229V	ENST00000392038	NM_001626.4	229	Atg/Gtg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039625	47039626	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTGCAGATC			P-0007318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	148	233	0	ENST00000329236.7:c.850_858dup	p.Ile284_Gln286dup	p.I284_Q286dup	ENST00000329236	NM_001204466.1	284	-/CTGCAGATC																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			870	431	278	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	303	251	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	452	326	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212288910	212288910	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	276	248	0	ENST00000342788.4:c.2836A>G	p.Thr946Ala	p.T946A	ENST00000342788	NM_005235.2	946	Act/Gct																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71050182	71050182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	336	262	0	ENST00000318789.4:c.1003G>C	p.Asp335His	p.D335H	ENST00000318789	NM_032682.5	335	Gat/Cat																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119720972	119720972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			925	550	353	0	ENST00000316626.5:c.203G>T	p.Gly68Val	p.G68V	ENST00000316626		68	gGt/gTt																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90993602	90993602	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1069	317	242	0	ENST00000265433.3:c.320+1G>T		p.X107_splice	ENST00000265433	NM_002485.4	107																																													NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741834	17741834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	129	105	0	ENST00000250003.3:c.505G>T	p.Ala169Ser	p.A169S	ENST00000250003	NM_002478.4	169	Gcc/Tcc																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18491436	18491436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			863	358	276	0	ENST00000266497.5:c.1349C>A	p.Thr450Lys	p.T450K	ENST00000266497		450	aCa/aAa																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88420207	88420207	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			739	363	340	0	ENST00000360948.2:c.2479T>A	p.Leu827Met	p.L827M	ENST00000360948	NM_001012338.2	827	Ttg/Atg																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99460084	99460084	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	284	252	0	ENST00000268035.6:c.2180A>C	p.His727Pro	p.H727P	ENST00000268035	NM_000875.3	727	cAc/cCc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713333	30713334	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	288	240	0	ENST00000359013.4:c.734dup	p.Glu246GlyfsTer3	p.E246Gfs*3	ENST00000359013	NM_001024847.2	245	ctg/cTtg																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508533	106508533	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	152	104	0	ENST00000359195.3:c.527del	p.Thr176SerfsTer6	p.T176Sfs*6	ENST00000359195	NM_002649.2	176	aCg/ag																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89685288	89685289	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	357	291	0	ENST00000371953.3:c.188dupA	p.Asn63LysfsTer11	p.N63Kfs*11	ENST00000371953	NM_000314.4	61	-/A																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106879	27106879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	110	278	0	ENST00000324856.7:c.6490C>T	p.Arg2164Trp	p.R2164W	ENST00000324856	NM_006015.4	2164	Cgg/Tgg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107008	27107008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	44	259	0	ENST00000324856.7:c.6619C>T	p.Gln2207Ter	p.Q2207*	ENST00000324856	NM_006015.4	2207	Cag/Tag																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71019886	71019886	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	135	316	0	ENST00000318789.4:c.1722+1G>T		p.X574_splice	ENST00000318789	NM_032682.5	574																																													NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71026105	71026105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	120	323	0	ENST00000318789.4:c.1517C>T	p.Ala506Val	p.A506V	ENST00000318789	NM_032682.5	506	gCg/gTg																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134898826	134898826	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	66	341	0	ENST00000398015.3:c.1882+2T>C		p.X628_splice	ENST00000398015	NM_004441.4	628																																													NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142255002	142255002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	41	358	0	ENST00000350721.4:c.3767C>A	p.Pro1256His	p.P1256H	ENST00000350721	NM_001184.3	1256	cCt/cAt																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185161350	185161350	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	105	457	0	ENST00000265026.3:c.777G>C	p.Trp259Cys	p.W259C	ENST00000265026	NM_004721.4	259	tgG/tgC																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55133571	55133571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	114	370	1	ENST00000257290.5:c.875C>T	p.Ala292Val	p.A292V	ENST00000257290	NM_006206.4	292	gCc/gTc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55589818	55589818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	86	375	0	ENST00000288135.5:c.1300C>A	p.Pro434Thr	p.P434T	ENST00000288135	NM_000222.2	434	Cca/Aca																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66233135	66233135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	166	441	0	ENST00000273854.3:c.1864G>T	p.Gly622Cys	p.G622C	ENST00000273854	NM_004439.5	622	Ggc/Tgc																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	131	379	2	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38947467	38947467	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	153	389	0	ENST00000357387.3:c.4213C>T	p.Arg1405Ter	p.R1405*	ENST00000357387	NM_152756.3	1405	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	155	434	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139405225	139405225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	133	354	0	ENST00000277541.6:c.2620G>A	p.Val874Ile	p.V874I	ENST00000277541	NM_017617.3	874	Gtt/Att																																												NEWRECORD																																		
TRAF2	0	MSKCC	GRCh37	9	139794896	139794896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	218	608	0	ENST00000247668.2:c.290G>A	p.Arg97His	p.R97H	ENST00000247668	NM_021138.3	97	cGc/cAc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	111	275	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	127	315	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																												NEWRECORD																																		
YAP1	0	MSKCC	GRCh37	11	102056856	102056856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	214	483	0	ENST00000282441.5:c.796C>T	p.Arg266Cys	p.R266C	ENST00000282441	NM_001130145.2	266	Cgt/Tgt																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133202251	133202251	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	144	399	0	ENST00000320574.5:c.6637G>A	p.Ala2213Thr	p.A2213T	ENST00000320574	NM_006231.2	2213	Gcc/Acc																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21562220	21562220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	357	729	0	ENST00000382592.4:c.1699G>A	p.Gly567Arg	p.G567R	ENST00000382592	NM_014572.2	567	Gga/Aga																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23637597	23637597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	194	439	0	ENST00000261584.4:c.2708C>T	p.Ala903Val	p.A903V	ENST00000261584	NM_024675.3	903	gCt/gTt																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68844112	68844112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	73	321	0	ENST00000261769.5:c.700G>A	p.Ala234Thr	p.A234T	ENST00000261769	NM_004360.3	234	Gct/Act																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828221	72828221	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	169	801	1	ENST00000268489.5:c.8360C>A	p.Pro2787His	p.P2787H	ENST00000268489	NM_006885.3	2787	cCt/cAt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72984709	72984709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	241	606	0	ENST00000268489.5:c.2875G>A	p.Asp959Asn	p.D959N	ENST00000268489	NM_006885.3	959	Gac/Aac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	98	253	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7976219	7976219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	39	278	0	ENST00000319144.4:c.1976G>A	p.Arg659Gln	p.R659Q	ENST00000319144	NM_001139.2	659	cGg/cAg																																												NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8108364	8108364	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	66	222	0	ENST00000585124.1:c.862-2A>G		p.X288_splice	ENST00000585124	NM_004217.3	288																																													NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8110524	8110524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	95	290	0	ENST00000585124.1:c.368G>A	p.Arg123His	p.R123H	ENST00000585124	NM_004217.3	123	cGc/cAc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2213905	2213905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	87	318	0	ENST00000398665.3:c.1717G>A	p.Ala573Thr	p.A573T	ENST00000398665	NM_032482.2	573	Gcc/Acc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5214604	5214604	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116515629		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	310	446	0	ENST00000357368.4:c.4462G>A	p.Val1488Ile	p.V1488I	ENST00000357368	NM_002850.3	1488	Gtc/Atc																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7125394	7125394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	223	492	2	ENST00000302850.5:c.3158G>A	p.Arg1053His	p.R1053H	ENST00000302850	NM_000208.2	1053	cGc/cAc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11098501	11098501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	87	258	0	ENST00000344626.4:c.1019C>T	p.Ala340Val	p.A340V	ENST00000344626	NM_003072.3	340	gCg/gTg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15281518	15281518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	145	361	0	ENST00000263388.2:c.4855C>T	p.Arg1619Cys	p.R1619C	ENST00000263388	NM_000435.2	1619	Cgc/Tgc																																												NEWRECORD																																		
CD79A	0	MSKCC	GRCh37	19	42383257	42383257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	218	665	0	ENST00000221972.3:c.277A>G	p.Ile93Val	p.I93V	ENST00000221972	NM_021601.3	93	Atc/Gtc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42798424	42798424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	162	381	0	ENST00000575354.2:c.4295G>A	p.Cys1432Tyr	p.C1432Y	ENST00000575354	NM_015125.3	1432	tGc/tAc																																												NEWRECORD																																		
BBC3	0	MSKCC	GRCh37	19	47725076	47725076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	144	512	1	ENST00000449228.1:c.668G>A	p.Arg223Gln	p.R223Q	ENST00000449228	NM_001127240.2	223	cGa/cAa																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31386351	31386351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	80	345	0	ENST00000328111.2:c.1576A>G	p.Met526Val	p.M526V	ENST00000328111	NM_006892.3	526	Atg/Gtg																																												NEWRECORD																																		
SRC	0	MSKCC	GRCh37	20	36024567	36024567	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	127	385	0	ENST00000358208.4:c.556G>A	p.Ala186Thr	p.A186T	ENST00000358208		186	Gcc/Acc																																												NEWRECORD																																		
MAPK1	0	MSKCC	GRCh37	22	22221706	22221706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	42	95	0	ENST00000215832.6:c.25G>A	p.Ala9Thr	p.A9T	ENST00000215832	NM_002745.4	9	Gcg/Acg																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	124	438	0	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30067827	30067827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	34	229	1	ENST00000338641.4:c.1012C>T	p.Arg338Cys	p.R338C	ENST00000338641	NM_000268.3	338	Cgc/Tgc																																												NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	188	295	3	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	24	85	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28624317	28624317	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	237	431	1	ENST00000241453.7:c.657del	p.Val220CysfsTer10	p.V220Cfs*10	ENST00000241453	NM_004119.2	219	aaA/aa																																												NEWRECORD																																		
SUFU	0	MSKCC	GRCh37	10	104263952	104263952	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	49	97	0	ENST00000369902.3:c.47del	p.Pro16ArgfsTer80	p.P16Rfs*80	ENST00000369902	NM_016169.3	15	Ccc/cc																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28597588	28597588	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	167	534	4	ENST00000241453.7:c.2317del	p.Arg773GlyfsTer8	p.R773Gfs*8	ENST00000241453	NM_004119.2	773	Agg/gg																																												NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	42	379	1	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																												NEWRECORD																																		
PLK2	10769	MSKCC	GRCh37	5	57753012	57753012	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772701630		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	161	406	4	ENST00000274289.3:c.1004del	p.Leu335CysfsTer68	p.L335Cfs*68	ENST00000274289	NM_006622.3	335	tTg/tg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	112	273	0	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																												NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	48	449	0	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435283	110435283	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	12	50	0	ENST00000375856.3:c.3118del	p.Glu1040SerfsTer66	p.E1040Sfs*66	ENST00000375856	NM_003749.2	1040	Gag/ag																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372093	55372093	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	36	114	2	ENST00000297316.4:c.788del	p.Pro263ArgfsTer124	p.P263Rfs*124	ENST00000297316	NM_022454.3	261	ggC/gg																																												NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185191049	185191049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	87	451	0	ENST00000265026.3:c.1934del	p.Pro645LeufsTer19	p.P645Lfs*19	ENST00000265026	NM_004721.4	644	Ccc/cc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	53	277	1	ENST00000263377.2:c.3061delC	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	288	605	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37053348	37053348	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs35847123		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	98	450	0	ENST00000231790.2:c.588delA	p.Lys196AsnfsTer6	p.K196Nfs*6	ENST00000231790	NM_000249.3	195	Aaa/aa																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15271747	15271747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	89	426	0	ENST00000263388.2:c.6692del	p.Pro2231GlnfsTer15	p.P2231Qfs*15	ENST00000263388	NM_000435.2	2231	cCa/ca																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112157627	112157628	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	149	434	0	ENST00000257430.4:c.1354_1355del	p.Val452SerfsTer7	p.V452Sfs*7	ENST00000257430	NM_000038.5	449	gcTGtg/gctg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152012386	152012386	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	128	413	0	ENST00000262189.6:c.427delA	p.Ser143ValfsTer3	p.S143Vfs*3	ENST00000262189	NM_170606.2	143	Agt/gt																																												NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	126	416	5	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16255882	16255883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	109	239	1	ENST00000375759.3:c.3154dup	p.Ile1052AsnfsTer7	p.I1052Nfs*7	ENST00000375759	NM_015001.2	1049	-/A																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	173	604	4	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																												NEWRECORD																																		
STAT5A	0	MSKCC	GRCh37	17	40456603	40456605	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	66	669	0	ENST00000345506.4:c.1315_1317del	p.Lys439del	p.K439del	ENST00000345506	NM_003152.3	438	gAGAag/gag																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	114	373	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	98003011	98003011	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	132	430	0	ENST00000289081.3:c.265del	p.Ile89PhefsTer2	p.I89Ffs*2	ENST00000289081	NM_000136.2	89	Att/tt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	29	291	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46125044	46125045	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	37	306	0	ENST00000334344.6:c.234dup	p.Pro79SerfsTer6	p.P79Sfs*6	ENST00000334344	NM_152641.2	77	-/T																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81334713	81334713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	263	721	0	ENST00000222390.5:c.2003C>T	p.Pro668Leu	p.P668L	ENST00000222390	NM_000601.4	668	cCa/cTa																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26029108	26029108	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	380	504	0	ENST00000435504.4:c.242A>G	p.Tyr81Cys	p.Y81C	ENST00000435504		81	tAt/tGt																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48953759	48953759	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	345	315	0	ENST00000267163.4:c.1362C>A	p.Tyr454Ter	p.Y454*	ENST00000267163	NM_000321.2	454	taC/taA																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9923306	9923306	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	192	527	1	ENST00000330684.3:c.1981C>T	p.Gln661Ter	p.Q661*	ENST00000330684	NM_001134407.1	661	Caa/Taa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16012112	16012112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	183	527	1	ENST00000268712.3:c.2170G>A	p.Glu724Lys	p.E724K	ENST00000268712	NM_006311.3	724	Gaa/Aaa																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39755338	39755338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	218	593	0	ENST00000288319.7:c.1427G>T	p.Gly476Val	p.G476V	ENST00000288319	NM_182918.3	476	gGc/gTc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579470	7579470	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AG			P-0011508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	303	426	0	ENST00000269305.4:c.217delinsCT	p.Val73LeufsTer76	p.V73Lfs*76	ENST00000269305	NM_001126112.2	73	Gtg/CTtg																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	304	750	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	175	953	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	130	531	0	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178921551	178921551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	9	638	0	ENST00000263967.3:c.1033A>T	p.Asn345Tyr	p.N345Y	ENST00000263967	NM_006218.2	345	Aat/Tat																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170689	112170689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	88	744	0	ENST00000257430.4:c.1785G>T	p.Leu595Phe	p.L595F	ENST00000257430	NM_000038.5	595	ttG/ttT																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64575125	64575126	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	76	616	0	ENST00000337652.1:c.694_696dup	p.Tyr232dup	p.Y232dup	ENST00000337652	NM_130803.2	232	-/TAC																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49940810	49940811	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0004232-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	135	1080	0	ENST00000296474.3:c.231_232dup	p.Leu78ProfsTer9	p.L78Pfs*9	ENST00000296474	NM_002447.2	78	ctg/cCCtg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	120	582	0	ENST00000269305.4:c.672G>C	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaC																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25466788	25466788	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	120	535	0	ENST00000264709.3:c.1915C>G	p.Leu639Val	p.L639V	ENST00000264709	NM_175629.2	639	Ctc/Gtc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55133883	55133883	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	52	431	0	ENST00000257290.5:c.1096G>C	p.Asp366His	p.D366H	ENST00000257290	NM_006206.4	366	Gat/Cat																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55225387	55225387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	97	370	0	ENST00000275493.2:c.1239C>A	p.Asn413Lys	p.N413K	ENST00000275493	NM_005228.3	413	aaC/aaA																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98244444	98244444	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	12	363	0	ENST00000331920.6:c.626T>G	p.Leu209Arg	p.L209R	ENST00000331920	NM_000264.3	209	cTt/cGt																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	432859	432859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	63	518	0	ENST00000399788.2:c.2057C>T	p.Ser686Phe	p.S686F	ENST00000399788	NM_001042603.1	686	tCt/tTt																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23635339	23635339	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	80	463	0	ENST00000261584.4:c.2825G>C	p.Arg942Thr	p.R942T	ENST00000261584	NM_024675.3	942	aGa/aCa																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2194543	2194543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	37	716	0	ENST00000398665.3:c.618G>A	p.Met206Ile	p.M206I	ENST00000398665	NM_032482.2	206	atG/atA																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2213568	2213568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	82	535	0	ENST00000398665.3:c.1588C>G	p.Gln530Glu	p.Q530E	ENST00000398665	NM_032482.2	530	Cag/Gag																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53228162	53228162	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	93	573	0	ENST00000375401.3:c.2240T>C	p.Leu747Pro	p.L747P	ENST00000375401	NM_004187.3	747	cTg/cCg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117948	70117969	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGGCAAGCTCTGGAGGTAGGA	TGGGCAAGCTCTGGAGGTAGGA	-			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	40	303	0	ENST00000245479.2:c.416_431+6del		p.X139_splice	ENST00000245479	NM_000346.3	139																																													NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128200704	128200705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	115	508	0	ENST00000341105.2:c.1100dup	p.Asp367GlufsTer17	p.D367Efs*17	ENST00000341105	NM_032638.4	367	gac/gaAc																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41243034	41243035	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGA			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	105	523	0	ENST00000357654.3:c.4108_4111dup	p.Gly1371ValfsTer4	p.G1371Vfs*4	ENST00000357654	NM_007294.3	1371	ggg/gTCTGgg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117942	70117943	+	protein_altering_variant	In_Frame_Ins	INS	AG	AG	CTTGCACA			P-0007037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	42	329	0	ENST00000245479.2:c.410_411delinsCTTGCACA	p.Lys137delinsThrCysThr	p.K137delinsTCT	ENST00000245479	NM_000346.3	137	aAG/aCTTGCACA																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	114	449	0	ENST00000206249.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000206249	NM_000125.3	536	cTc/cCc																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225360638	225360638	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	145	549	0	ENST00000264414.4:c.1753T>G	p.Ser585Ala	p.S585A	ENST00000264414	NM_003590.4	585	Tct/Gct																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135777041	135777041	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	142	563	0	ENST00000298552.3:c.2437G>T	p.Glu813Ter	p.E813*	ENST00000298552	NM_001162426.1	813	Gaa/Taa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578411	7578411	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	237	412	0	ENST00000269305.4:c.519del	p.Arg174GlyfsTer73	p.R174Gfs*73	ENST00000269305	NM_001126112.2	173	gtG/gt																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50918078	50918080	+	protein_altering_variant	In_Frame_Ins	INS	TTC	TTC	CTGCTTATCAGT			P-0005972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	134	664	0	ENST00000440232.2:c.2395_2397delinsCTGCTTATCAGT	p.Phe799delinsLeuLeuIleSer	p.F799delinsLLIS	ENST00000440232	NM_002691.3	799	TTC/CTGCTTATCAGT																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	606	406	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12870953	12870953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	262	512	0	ENST00000228872.4:c.180G>C	p.Trp60Cys	p.W60C	ENST00000228872	NM_004064.3	60	tgG/tgC																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133760765	133760765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	113	575	0	ENST00000318560.5:c.3088G>A	p.Gly1030Ser	p.G1030S	ENST00000318560	NM_005157.4	1030	Ggc/Agc																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54959326	54959326	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0013156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2143	153	621	0	ENST00000312783.6:c.374A>C	p.Lys125Thr	p.K125T	ENST00000312783	NM_198436.1	125	aAg/aCg																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766408	66766408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	29	70	0	ENST00000374690.3:c.1420G>A	p.Glu474Lys	p.E474K	ENST00000374690	NM_000044.3	474	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578226	7578227	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CATCCAAA			P-0013156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	1000	874	0	ENST00000269305.4:c.615_622dup	p.Asp208ValfsTer42	p.D208Vfs*42	ENST00000269305	NM_001126112.2	208	gac/gTTTGGATGac																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152382185	152382185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	407	393	0	ENST00000206249.3:c.1295C>T	p.Ser432Leu	p.S432L	ENST00000206249	NM_000125.3	432	tCa/tTa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	574	441	1	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115258697	115258697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	248	274	0	ENST00000369535.4:c.85G>T	p.Val29Leu	p.V29L	ENST00000369535	NM_002524.4	29	Gta/Tta																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90982754	90982754	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	439	354	0	ENST00000265433.3:c.734G>C	p.Gly245Ala	p.G245A	ENST00000265433	NM_002485.4	245	gGa/gCa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70404762	70404762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	24	387	1	ENST00000373644.4:c.2276G>A	p.Gly759Asp	p.G759D	ENST00000373644	NM_030625.2	759	gGc/gAc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49037866	49037866	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0010351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	612	478	0	ENST00000267163.4:c.2107-1G>C		p.X703_splice	ENST00000267163	NM_000321.2	703																																													NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857077	9857077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	531	513	0	ENST00000330684.3:c.4324C>A	p.Pro1442Thr	p.P1442T	ENST00000330684	NM_001134407.1	1442	Ccc/Acc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10273999	10273999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	507	570	0	ENST00000330684.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000330684	NM_001134407.1	90	atG/atA																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81610540	81610541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	455	495	0	ENST00000298171.2:c.2141dup	p.Asn715GlufsTer4	p.N715Efs*4	ENST00000298171	NM_000369.2	713	cca/ccAa																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57484265	57484361	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CGATCAGGTGTGCAAAACCCCTCCCCACCAGAGGACTCTGAGCCCTCTTTCCAAACTACTCCAGACCTTTGCTTTAGATTGGCAATTATTACTGTTT	CGATCAGGTGTGCAAAACCCCTCCCCACCAGAGGACTCTGAGCCCTCTTTCCAAACTACTCCAGACCTTTGCTTTAGATTGGCAATTATTACTGTTT	-			P-0005176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	95	315	0	ENST00000371085.3:c.581_586-42del		p.X194_splice	ENST00000371085	NM_000516.4	194																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579341	7579342	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATGC			P-0005176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	218	425	0	ENST00000269305.4:c.342_345dup	p.Ser116AlafsTer34	p.S116Afs*34	ENST00000269305	NM_001126112.2	115	-/GCAT																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	146	443	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	82	557	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	59	612	0	ENST00000342988.3:c.1523G>T	p.Gly508Val	p.G508V	ENST00000342988	NM_005359.5	508	gGc/gTc																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18439807	18439807	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	70	437	0	ENST00000266497.5:c.706del	p.Glu236LysfsTer17	p.E236Kfs*17	ENST00000266497		235	gtG/gt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107135	27107136	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	52	340	0	ENST00000324856.7:c.6747dupA	p.Glu2250ArgfsTer28	p.E2250Rfs*28	ENST00000324856	NM_006015.4	2249	tca/tcAa																																												NEWRECORD																																		
EED	0	MSKCC	GRCh37	11	85975304	85975304	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			409	121	371	0	ENST00000263360.6:c.725C>T	p.Ala242Val	p.A242V	ENST00000263360	NM_003797.3	242	gCt/gTt																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14041826	14041827	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	196	444	2	ENST00000311895.7:c.2374dup	p.Thr792AsnfsTer23	p.T792Nfs*23	ENST00000311895	NM_005236.2	791	-/A																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188309	10188309	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	168	617	0	ENST00000256474.2:c.452T>C	p.Ile151Thr	p.I151T	ENST00000256474	NM_000551.3	151	aTc/aCc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47158186	47158186	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	79	536	0	ENST00000409792.3:c.4513del	p.Ser1505LeufsTer10	p.S1505Lfs*10	ENST00000409792	NM_014159.6	1505	Tct/ct																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52637750	52637750	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0014625-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	72	417	0	ENST00000394830.3:c.2568-2A>G		p.X856_splice	ENST00000394830	NM_018313.4	856																																													NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	247	505	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	175	1035	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153249510	153249510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	74	490	0	ENST00000281708.4:c.1268G>T	p.Gly423Val	p.G423V	ENST00000281708	NM_033632.3	423	gGa/gTa																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26828881	26828881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	334	516	2	ENST00000381527.3:c.103G>A	p.Val35Ile	p.V35I	ENST00000381527	NM_001260.1	35	Gtc/Atc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	182	725	0	ENST00000342988.3:c.1064A>G	p.Asp355Gly	p.D355G	ENST00000342988	NM_005359.5	355	gAc/gGc																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52714657	52714657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	363	567	0	ENST00000322088.6:c.415G>A	p.Asp139Asn	p.D139N	ENST00000322088	NM_014225.5	139	Gac/Aac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578283	7578284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	296	575	0	ENST00000269305.4:c.565dup	p.Ala189GlyfsTer20	p.A189Gfs*20	ENST00000269305	NM_001126112.2	189	gcc/gGcc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175650	112175651	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	101	689	0	ENST00000257430.4:c.4364dup	p.Asn1455LysfsTer2	p.N1455Kfs*2	ENST00000257430	NM_000038.5	1453	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	602	499	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45374935	45374935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	66	474	0	ENST00000262160.6:c.908C>G	p.Thr303Arg	p.T303R	ENST00000262160	NM_005901.5	303	aCa/aGa																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183742	10183742	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	365	413	3	ENST00000256474.2:c.211C>A	p.Pro71Thr	p.P71T	ENST00000256474	NM_000551.3	71	Ccc/Acc																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86672758	86672758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	96	510	0	ENST00000274376.6:c.2245C>T	p.Arg749Ter	p.R749*	ENST00000274376	NM_002890.2	749	Cga/Tga																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10274196	10274196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	138	251	1	ENST00000330684.3:c.73G>A	p.Ala25Thr	p.A25T	ENST00000330684	NM_001134407.1	25	Gcg/Acg																																												NEWRECORD																																		
SRC	0	MSKCC	GRCh37	20	36031687	36031687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1934	290	575	3	ENST00000358208.4:c.1516C>T	p.Pro506Ser	p.P506S	ENST00000358208		506	Cct/Tct																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70344889	70344889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	304	700	0	ENST00000374080.3:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000374080		707	Gag/Aag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112157591	112157592	+	splice_acceptor_variant	Splice_Site	INS	-	-	GTGCCAGCTCCTGTTGAACATCAGATCTGTCCTGCTGTGTGTGTGGT			P-0007218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	147	440	0	ENST00000257430.4:c.1355_1356insGGTGTGCCAGCTCCTGTTGAACATCAGATCTGTCCTGCTGTGTGTGT		p.X452_splice	ENST00000257430	NM_000038.5	452																																													NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114903780	114903780	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007218-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	160	629	0	ENST00000543371.1:c.785del	p.Pro262HisfsTer23	p.P262Hfs*23	ENST00000543371	NM_001198531.1	262	Cca/ca																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106513002	106513002	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	343	374	0	ENST00000359195.3:c.2016C>A	p.Tyr672Ter	p.Y672*	ENST00000359195	NM_002649.2	672	taC/taA																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112017602	112017602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	271	718	0	ENST00000368678.4:c.911C>T	p.Ser304Phe	p.S304F	ENST00000368678		304	tCc/tTc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106520072	106520072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	160	409	0	ENST00000359195.3:c.2500C>T	p.His834Tyr	p.H834Y	ENST00000359195	NM_002649.2	834	Cat/Tat																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101521	27101523	+	frameshift_variant	Frame_Shift_Del	DEL	TAG	TAG	AA			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	344	951	1	ENST00000324856.7:c.4803_4805delinsAA	p.Ser1602ThrfsTer10	p.S1602Tfs*10	ENST00000324856	NM_006015.4	1601	ccTAGc/ccAAc																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162746014	162746014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	208	526	0	ENST00000367921.3:c.2137A>G	p.Thr713Ala	p.T713A	ENST00000367921	NM_006182.2	713	Aca/Gca																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	430169	430169	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	200	506	0	ENST00000399788.2:c.2533C>T	p.Gln845Ter	p.Q845*	ENST00000399788	NM_001042603.1	845	Caa/Taa																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245553	46245553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	392	453	1	ENST00000334344.6:c.3647C>T	p.Thr1216Met	p.T1216M	ENST00000334344	NM_152641.2	1216	aCg/aTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49438234	49438234	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	655	838	0	ENST00000301067.7:c.5035G>T	p.Glu1679Ter	p.E1679*	ENST00000301067	NM_003482.3	1679	Gag/Tag																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68849535	68849535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	312	820	0	ENST00000261769.5:c.1438G>A	p.Val480Met	p.V480M	ENST00000261769	NM_004360.3	480	Gtg/Atg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	515	648	0	ENST00000269305.4:c.97-2A>T		p.X33_splice	ENST00000269305	NM_001126112.2	33																																													NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50920465	50920465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	320	702	0	ENST00000440232.2:c.3157C>A	p.Arg1053Ser	p.R1053S	ENST00000440232	NM_002691.3	1053	Cgc/Agc																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204735398	204735398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	143	428	0	ENST00000302823.3:c.199A>G	p.Thr67Ala	p.T67A	ENST00000302823	NM_005214.4	67	Act/Gct																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225362486	225362486	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	362	565	0	ENST00000264414.4:c.1691A>T	p.Tyr564Phe	p.Y564F	ENST00000264414	NM_003590.4	564	tAt/tTt																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225362490	225362491	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	358	585	0	ENST00000264414.4:c.1686dup	p.Phe563IlefsTer6	p.F563Ifs*6	ENST00000264414	NM_003590.4	562	-/A																																												NEWRECORD																																		
DROSHA	0	MSKCC	GRCh37	5	31526379	31526379	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1310	402	1255	0	ENST00000344624.3:c.661del	p.Ser221ProfsTer5	p.S221Pfs*5	ENST00000344624		221	Tcc/cc																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38945060	38945060	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	217	659	1	ENST00000357387.3:c.4744C>T	p.Gln1582Ter	p.Q1582*	ENST00000357387	NM_152756.3	1582	Caa/Taa																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128852188	128852188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	729	997	6	ENST00000249373.3:c.2260G>A	p.Ala754Thr	p.A754T	ENST00000249373	NM_005631.4	754	Gcc/Acc																																												NEWRECORD																																		
WHSC1L1	0	MSKCC	GRCh37	8	38189051	38189051	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	336	866	1	ENST00000317025.8:c.963G>A	p.Trp321Ter	p.W321*	ENST00000317025	NM_023034.1	321	tgG/tgA																																												NEWRECORD																																		
RXRA	0	MSKCC	GRCh37	9	137321044	137321044	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014308-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	586	775	0	ENST00000481739.1:c.1001G>C	p.Arg334Pro	p.R334P	ENST00000481739	NM_002957.4	334	cGg/cCg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3828126	3828126	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	49	423	0	ENST00000262367.5:c.1999G>T	p.Glu667Ter	p.E667*	ENST00000262367	NM_004380.2	667	Gaa/Taa																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56839524	56839524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	49	416	0	ENST00000308159.5:c.469G>C	p.Asp157His	p.D157H	ENST00000308159	NM_014669.4	157	Gac/Cac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577530	7577533	+	frameshift_variant	Frame_Shift_Ins	INS	TGGG	TGGG	AGGGA			P-0014520-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	100	528	0	ENST00000269305.4:c.748_751delinsTCCCT	p.Pro250SerfsTer14	p.P250Sfs*14	ENST00000269305	NM_001126112.2	250	CCCAtc/TCCCTtc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	67	363	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	55	353	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372347	55372347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	64	295	2	ENST00000297316.4:c.1037C>T	p.Thr346Met	p.T346M	ENST00000297316	NM_022454.3	346	aCg/aTg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139391095	139391095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	45	322	0	ENST00000277541.6:c.7096C>T	p.Gln2366Ter	p.Q2366*	ENST00000277541	NM_017617.3	2366	Cag/Tag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175410	112175411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	64	355	1	ENST00000257430.4:c.4120dup	p.Glu1374GlyfsTer12	p.E1374Gfs*12	ENST00000257430	NM_000038.5	1373	-/G																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115952	8115953	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0004295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	71	155	0	ENST00000346208.3:c.1299_1300dupCC	p.His434ProfsTer42	p.H434Pfs*42	ENST00000346208		433	cac/caCCc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212587144	212587144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	129	323	1	ENST00000342788.4:c.857G>T	p.Gly286Val	p.G286V	ENST00000342788	NM_005235.2	286	gGa/gTa																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152415531	152415531	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	182	361	0	ENST00000206249.3:c.1381T>G	p.Phe461Val	p.F461V	ENST00000206249	NM_000125.3	461	Ttt/Gtt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118377363	118377363	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0004295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	67	180	0	ENST00000534358.1:c.10754+2T>C		p.X3585_splice	ENST00000534358	NM_005933.3	3585																																													NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32910675	32910675	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	165	558	0	ENST00000380152.3:c.2183A>T	p.Asp728Val	p.D728V	ENST00000380152		728	gAt/gTt																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842626	68842627	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	153	366	0	ENST00000261769.5:c.566dupT	p.Tyr190LeufsTer9	p.Y190Lfs*9	ENST00000261769	NM_004360.3	188	gtt/gTtt																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0013454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	431	788	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133710889	133710889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1369	186	941	1	ENST00000318560.5:c.56C>T	p.Ser19Leu	p.S19L	ENST00000318560	NM_005157.4	19	tCg/tTg																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89816265	89816265	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	117	596	0	ENST00000389301.3:c.3112C>G	p.Leu1038Val	p.L1038V	ENST00000389301	NM_000135.2	1038	Ctc/Gtc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56180624	56180625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	127	447	0	ENST00000399503.3:c.3955dup	p.Tyr1319LeufsTer6	p.Y1319Lfs*6	ENST00000399503	NM_005921.1	1318	aat/aaTt																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56168751	56168752	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	133	569	0	ENST00000399503.3:c.1609_1610del	p.Ser537GlnfsTer3	p.S537Qfs*3	ENST00000399503	NM_005921.1	535	caAGag/caag																																												NEWRECORD																																		
CDK4	0	MSKCC	GRCh37	12	58143258	58143258	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			346	160	441	0	ENST00000257904.6:c.662A>G	p.Asp221Gly	p.D221G	ENST00000257904	NM_000075.3	221	gAc/gGc																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7978914	7978915	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GAGCTCTCCC			P-0012669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			374	114	566	0	ENST00000319144.4:c.1643_1652dup	p.Phe553GlufsTer6	p.F553Efs*6	ENST00000319144	NM_001139.2	551	tca/tcGGGAGAGCTCa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151845261	151845261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012669-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			392	191	619	0	ENST00000262189.6:c.13751G>A	p.Arg4584Gln	p.R4584Q	ENST00000262189	NM_170606.2	4584	cGg/cAg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057811	27057811	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1549	96	630	0	ENST00000324856.7:c.1519C>T	p.Gln507Ter	p.Q507*	ENST00000324856	NM_006015.4	507	Caa/Taa																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64127709	64127709	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	50	300	0	ENST00000334205.4:c.202C>T	p.Arg68Cys	p.R68C	ENST00000334205	NM_003942.2	68	Cgc/Tgc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41572350	41572350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	59	370	2	ENST00000263253.7:c.4879C>T	p.Arg1627Trp	p.R1627W	ENST00000263253	NM_001429.3	1627	Cgg/Tgg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89685270	89685271	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0011509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	36	120	0	ENST00000371953.3:c.170dup	p.Leu57PhefsTer6	p.L57Ffs*6	ENST00000371953	NM_000314.4	55	-/T																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258907	16258907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	299	525	2	ENST00000375759.3:c.6172G>A	p.Ala2058Thr	p.A2058T	ENST00000375759	NM_015001.2	2058	Gcc/Acc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29754943	29754943	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	21	350	0	ENST00000389048.3:c.992A>G	p.His331Arg	p.H331R	ENST00000389048	NM_004304.4	331	cAc/cGc																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61720175	61720175	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	126	533	0	ENST00000401558.2:c.1259T>C	p.Met420Thr	p.M420T	ENST00000401558	NM_003400.3	420	aTg/aCg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251730	212251730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	209	500	2	ENST00000342788.4:c.3329C>A	p.Thr1110Asn	p.T1110N	ENST00000342788	NM_005235.2	1110	aCc/aAc																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72873620	72873620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	298	638	1	ENST00000325599.8:c.682G>A	p.Ala228Thr	p.A228T	ENST00000325599	NM_018130.2	228	Gcc/Acc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1801158	1801158	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	182	397	0	ENST00000260795.2:c.287T>A	p.Val96Glu	p.V96E	ENST00000260795		96	gTg/gAg																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55961742	55961742	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	288	600	1	ENST00000263923.4:c.2817+2T>C		p.X939_splice	ENST00000263923	NM_002253.2	939																																													NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1278883	1278883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	185	445	0	ENST00000310581.5:c.2159T>C	p.Ile720Thr	p.I720T	ENST00000310581	NM_198253.2	720	aTc/aCc																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149457728	149457728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	240	453	0	ENST00000286301.3:c.676G>A	p.Ala226Thr	p.A226T	ENST00000286301	NM_005211.3	226	Gcc/Acc																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056427	26056427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	218	385	0	ENST00000343677.2:c.230A>G	p.Asn77Ser	p.N77S	ENST00000343677	NM_005319.3	77	aAc/aGc																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150005375	150005375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	276	610	3	ENST00000253339.5:c.850G>A	p.Val284Ile	p.V284I	ENST00000253339		284	Gta/Ata																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152201828	152201828	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	79	580	1	ENST00000206249.3:c.682A>G	p.Thr228Ala	p.T228A	ENST00000206249	NM_000125.3	228	Acc/Gcc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116339647	116339647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	54	384	0	ENST00000397752.3:c.509G>A	p.Ser170Asn	p.S170N	ENST00000397752	NM_000245.2	170	aGc/aAc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116415076	116415076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	272	550	1	ENST00000397752.3:c.3170C>T	p.Ala1057Val	p.A1057V	ENST00000397752	NM_000245.2	1057	gCt/gTt																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148523672	148523672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	276	431	0	ENST00000320356.2:c.781A>G	p.Thr261Ala	p.T261A	ENST00000320356	NM_004456.4	261	Acc/Gcc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145742886	145742886	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	16	210	0	ENST00000428558.2:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000428558	NM_004260.3	42	tAc/tGc																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133756042	133756042	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	192	388	1	ENST00000318560.5:c.1669G>T	p.Gly557Ter	p.G557*	ENST00000318560	NM_005157.4	557	Gga/Tga																																												NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69631177	69631177	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	221	524	0	ENST00000334134.2:c.235A>G	p.Thr79Ala	p.T79A	ENST00000334134	NM_005247.2	79	Acg/Gcg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108124655	108124655	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	250	616	0	ENST00000278616.4:c.2013A>G	p.Ile671Met	p.I671M	ENST00000278616	NM_000051.3	671	atA/atG																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1023201	1023201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	250	477	0	ENST00000358495.3:c.1054G>A	p.Ala352Thr	p.A352T	ENST00000358495	NM_134424.2	352	Gcc/Acc																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12037514	12037514	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			214	123	232	0	ENST00000396373.4:c.1145A>G	p.Asn382Ser	p.N382S	ENST00000396373	NM_001987.4	382	aAc/aGc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32893318	32893318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	347	677	0	ENST00000380152.3:c.172G>A	p.Glu58Lys	p.E58K	ENST00000380152		58	Gaa/Aaa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32953620	32953620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	219	360	0	ENST00000380152.3:c.8921T>C	p.Ile2974Thr	p.I2974T	ENST00000380152		2974	aTt/aCt																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73335810	73335810	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183862178		P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	171	432	0	ENST00000377767.4:c.2485C>T	p.Arg829Cys	p.R829C	ENST00000377767	NM_014953.3	829	Cgt/Tgt																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103514517	103514517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	243	440	0	ENST00000355739.4:c.1018C>T	p.Pro340Ser	p.P340S	ENST00000355739	NM_000123.3	340	Cct/Tct																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105243045	105243045	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	427	445	0	ENST00000349310.3:c.238T>C	p.Trp80Arg	p.W80R	ENST00000349310	NM_001014432.1	80	Tgg/Cgg																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99250898	99250898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	270	511	0	ENST00000268035.6:c.202G>A	p.Glu68Lys	p.E68K	ENST00000268035	NM_000875.3	68	Gag/Aag																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23646199	23646199	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	68	598	0	ENST00000261584.4:c.1668A>T	p.Leu556Phe	p.L556F	ENST00000261584	NM_024675.3	556	ttA/ttT																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	301	539	1	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39629513	39629513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	307	570	0	ENST00000262039.4:c.2207C>G	p.Thr736Ser	p.T736S	ENST00000262039	NM_002647.2	736	aCc/aGc																																												NEWRECORD																																		
GNA11	0	MSKCC	GRCh37	19	3113388	3113388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	276	587	0	ENST00000078429.4:c.382T>C	p.Tyr128His	p.Y128H	ENST00000078429	NM_002067.2	128	Tac/Cac																																												NEWRECORD																																		
MAP2K2	0	MSKCC	GRCh37	19	4094474	4094474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	197	432	0	ENST00000262948.5:c.1069C>T	p.Arg357Trp	p.R357W	ENST00000262948	NM_030662.3	357	Cgg/Tgg																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18278074	18278074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	187	438	0	ENST00000222254.8:c.1694C>T	p.Pro565Leu	p.P565L	ENST00000222254	NM_005027.3	565	cCg/cTg																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41743996	41743996	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	238	582	0	ENST00000301178.4:c.931T>C	p.Cys311Arg	p.C311R	ENST00000301178	NM_021913.4	311	Tgc/Cgc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164725	36164725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	196	459	0	ENST00000300305.3:c.1150C>A	p.Pro384Thr	p.P384T	ENST00000300305		384	Ccc/Acc																																												NEWRECORD																																		
U2AF1	0	MSKCC	GRCh37	21	44513243	44513243	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200044775		P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			149	67	201	0	ENST00000291552.4:c.692C>T	p.Ser231Leu	p.S231L	ENST00000291552	NM_006758.2	231	tCg/tTg																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			62	330	309	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143044482	143044482	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	67	541	0	ENST00000262992.4:c.1980del	p.Leu661Ter	p.L661*	ENST00000262992	NM_001101669.1	660	ggG/gg																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150005427	150005428	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	77	521	0	ENST00000253339.5:c.797dup	p.Ser267PhefsTer48	p.S267Ffs*48	ENST00000253339		266	cct/ccCt																																												NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	23	258	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																												NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	182	469	1	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49447773	49447773	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	207	332	0	ENST00000301067.7:c.661del	p.Ala221LeufsTer40	p.A221Lfs*40	ENST00000301067	NM_003482.3	221	Gct/ct																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73355942	73355942	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	224	486	0	ENST00000377767.4:c.29del	p.Lys10ArgfsTer7	p.K10Rfs*7	ENST00000377767	NM_014953.3	10	aAg/ag																																												NEWRECORD																																		
CREBBP	1387	MSKCC	GRCh37	16	3777898	3777898	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	249	648	0	ENST00000262367.5:c.7150del	p.His2384ThrfsTer12	p.H2384Tfs*12	ENST00000262367	NM_004380.2	2384	Cac/ac																																												NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	212	534	0	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0015022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	44	393	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591139	67591140	+	missense_variant	Missense_Mutation	DNP	GA	GA	CC			P-0015022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	27	346	0	ENST00000274335.5:c.1732_1733delinsCC	p.Asp578Pro	p.D578P	ENST00000274335		578	GAc/CCc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106405	27106406	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCT			P-0015022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	44	565	0	ENST00000324856.7:c.6018_6021dup	p.Leu2008AlafsTer26	p.L2008Afs*26	ENST00000324856	NM_006015.4	2006	ggg/gGGCTgg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624262	89624262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	80	361	0	ENST00000371953.3:c.36del	p.Asn12LysfsTer12	p.N12Kfs*12	ENST00000371953	NM_000314.4	12	aaC/aa																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28601231	28601231	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015022-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	45	499	0	ENST00000241453.7:c.2201A>G	p.Asn734Ser	p.N734S	ENST00000241453	NM_004119.2	734	aAt/aGt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11316237	11316237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	64	389	0	ENST00000361445.4:c.517C>T	p.Arg173Cys	p.R173C	ENST00000361445	NM_004958.3	173	Cgt/Tgt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099090	27099090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	57	424	0	ENST00000324856.7:c.3506C>T	p.Pro1169Leu	p.P1169L	ENST00000324856	NM_006015.4	1169	cCa/cTa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100178	27100178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	45	517	0	ENST00000324856.7:c.3974C>T	p.Pro1325Leu	p.P1325L	ENST00000324856	NM_006015.4	1325	cCc/cTc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458380	120458380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	31	231	0	ENST00000256646.2:c.6965C>T	p.Pro2322Leu	p.P2322L	ENST00000256646	NM_024408.3	2322	cCc/cTc																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162741940	162741940	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150835897		P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			153	52	555	0	ENST00000367921.3:c.1631C>T	p.Thr544Ile	p.T544I	ENST00000367921	NM_006182.2	544	aCc/aTc																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25497898	25497898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	38	504	0	ENST00000264709.3:c.551C>T	p.Pro184Leu	p.P184L	ENST00000264709	NM_175629.2	184	cCc/cTc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248411	212248411	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	47	673	0	ENST00000342788.4:c.3856T>A	p.Ser1286Thr	p.S1286T	ENST00000342788	NM_005235.2	1286	Tct/Act																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212578371	212578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	35	513	0	ENST00000342788.4:c.886A>C	p.Asn296His	p.N296H	ENST00000342788	NM_005235.2	296	Aac/Cac																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89391000	89391000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	118	656	0	ENST00000336596.2:c.1066G>A	p.Asp356Asn	p.D356N	ENST00000336596	NM_005233.5	356	Gat/Aat																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89468535	89468535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	49	431	0	ENST00000336596.2:c.2069C>T	p.Thr690Ile	p.T690I	ENST00000336596	NM_005233.5	690	aCc/aTc																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128202807	128202807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			112	40	455	0	ENST00000341105.2:c.913C>T	p.Leu305Phe	p.L305F	ENST00000341105	NM_032638.4	305	Ctc/Ttc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808641	1808641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			112	79	765	1	ENST00000260795.2:c.2254C>T	p.Leu752Phe	p.L752F	ENST00000260795		752	Ctt/Ttt																																												NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55953837	55953837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	33	630	0	ENST00000263923.4:c.3599C>T	p.Ser1200Phe	p.S1200F	ENST00000263923	NM_002253.2	1200	tCc/tTc																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66230813	66230813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	43	859	0	ENST00000273854.3:c.2158G>A	p.Asp720Asn	p.D720N	ENST00000273854	NM_004439.5	720	Gat/Aat																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467848	66467848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	46	732	0	ENST00000273854.3:c.421C>T	p.Pro141Ser	p.P141S	ENST00000273854	NM_004439.5	141	Cct/Tct																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106197429	106197429	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	67	655	0	ENST00000380013.4:c.5762T>C	p.Met1921Thr	p.M1921T	ENST00000380013	NM_001127208.2	1921	aTg/aCg																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876398	35876398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	38	481	0	ENST00000303115.3:c.1190G>A	p.Gly397Glu	p.G397E	ENST00000303115	NM_002185.3	397	gGg/gAg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177731	56177731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	82	469	0	ENST00000399503.3:c.2704C>T	p.Pro902Ser	p.P902S	ENST00000399503	NM_005921.1	902	Cct/Tct																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173647	112173647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	52	565	0	ENST00000257430.4:c.2356C>T	p.Arg786Cys	p.R786C	ENST00000257430	NM_000038.5	786	Cgt/Tgt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176824	112176824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	57	763	0	ENST00000257430.4:c.5533C>T	p.His1845Tyr	p.H1845Y	ENST00000257430	NM_000038.5	1845	Cat/Tat																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131927070	131927070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	113	660	0	ENST00000265335.6:c.1607C>T	p.Thr536Ile	p.T536I	ENST00000265335		536	aCc/aTc																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176710810	176710810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	54	728	0	ENST00000439151.2:c.6032C>T	p.Pro2011Leu	p.P2011L	ENST00000439151	NM_022455.4	2011	cCc/cTc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180056964	180056964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			66	36	788	0	ENST00000261937.6:c.655C>T	p.Pro219Ser	p.P219S	ENST00000261937	NM_182925.4	219	Ccc/Tcc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117704518	117704518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	102	729	0	ENST00000368508.3:c.2458C>T	p.Leu820Phe	p.L820F	ENST00000368508	NM_002944.2	820	Ctt/Ttt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157150422	157150422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	64	652	1	ENST00000346085.5:c.1604C>T	p.Pro535Leu	p.P535L	ENST00000346085	NM_020732.3	535	cCt/cTt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527802	157527802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	51	353	0	ENST00000346085.5:c.5527C>T	p.Arg1843Cys	p.R1843C	ENST00000346085	NM_020732.3	1843	Cgc/Tgc																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13940460	13940460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	128	516	0	ENST00000405192.2:c.1046C>T	p.Ala349Val	p.A349V	ENST00000405192	NM_001163147.1	349	gCc/gTc																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50459549	50459549	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	26	341	0	ENST00000331340.3:c.838C>T	p.Gln280Ter	p.Q280*	ENST00000331340	NM_006060.4	280	Cag/Tag																																												NEWRECORD																																		
HGF	3082	MSKCC	GRCh37	7	81381541	81381541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	62	917	0	ENST00000222390.5:c.520G>A	p.Glu174Lys	p.E174K	ENST00000222390	NM_000601.4	174	Gaa/Aaa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8376024	8376024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	39	504	0	ENST00000356435.5:c.4573C>T	p.Pro1525Ser	p.P1525S	ENST00000356435		1525	Cca/Tca																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			66	57	383	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			66	57	383	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98241391	98241391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			52	42	454	0	ENST00000331920.6:c.1106C>T	p.Pro369Leu	p.P369L	ENST00000331920	NM_000264.3	369	cCc/cTc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63851285	63851285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	76	468	0	ENST00000279873.7:c.2063C>T	p.Ser688Phe	p.S688F	ENST00000279873	NM_032199.2	688	tCc/tTc																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88635779	88635779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	18	484	1	ENST00000372037.3:c.4C>T	p.Pro2Ser	p.P2S	ENST00000372037	NM_004329.2	2	Cct/Tct																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123239513	123239513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	69	716	0	ENST00000358487.5:c.2324C>T	p.Pro775Leu	p.P775L	ENST00000358487	NM_000141.4	775	cCt/cTt																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64575494	64575494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	43	604	0	ENST00000337652.1:c.538C>T	p.Leu180Phe	p.L180F	ENST00000337652	NM_130803.2	180	Ctc/Ttc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108139269	108139269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	59	705	0	ENST00000278616.4:c.2771G>A	p.Arg924Gln	p.R924Q	ENST00000278616	NM_000051.3	924	cGg/cAg																																												NEWRECORD																																		
H3F3C	0	MSKCC	GRCh37	12	31944926	31944926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			54	14	186	0	ENST00000340398.3:c.175G>A	p.Glu59Lys	p.E59K	ENST00000340398	NM_001013699.2	59	Gag/Aag																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28592680	28592680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	48	768	0	ENST00000241453.7:c.2465G>A	p.Gly822Glu	p.G822E	ENST00000241453	NM_004119.2	822	gGg/gAg																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110436240	110436240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			30	19	282	0	ENST00000375856.3:c.2161C>T	p.Pro721Ser	p.P721S	ENST00000375856	NM_003749.2	721	Ccg/Tcg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3778935	3778935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			59	20	231	0	ENST00000262367.5:c.6113C>T	p.Pro2038Leu	p.P2038L	ENST00000262367	NM_004380.2	2038	cCt/cTt																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857742	9857742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	35	695	0	ENST00000330684.3:c.3659A>G	p.Asn1220Ser	p.N1220S	ENST00000330684	NM_001134407.1	1220	aAc/aGc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858787	9858787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	20	340	0	ENST00000330684.3:c.2614C>T	p.His872Tyr	p.H872Y	ENST00000330684	NM_001134407.1	872	Cat/Tat																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9862896	9862896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	27	435	0	ENST00000330684.3:c.2407G>A	p.Glu803Lys	p.E803K	ENST00000330684	NM_001134407.1	803	Gag/Aag																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9862939	9862939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	25	368	0	ENST00000330684.3:c.2364G>A	p.Met788Ile	p.M788I	ENST00000330684	NM_001134407.1	788	atG/atA																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89825073	89825073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			191	22	579	0	ENST00000389301.3:c.2893C>T	p.Pro965Ser	p.P965S	ENST00000389301	NM_000135.2	965	Cct/Tct																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29553484	29553484	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs17881753		P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	64	723	0	ENST00000358273.4:c.2033C>T	p.Pro678Leu	p.P678L	ENST00000358273	NM_001042492.2	678	cCg/cTg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29559842	29559842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	66	474	0	ENST00000358273.4:c.3439C>T	p.Leu1147Phe	p.L1147F	ENST00000358273	NM_001042492.2	1147	Ctt/Ttt																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533581	63533581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	47	1097	0	ENST00000307078.5:c.1573C>T	p.Pro525Ser	p.P525S	ENST00000307078	NM_004655.3	525	Ccc/Tcc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591837	48591837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	100	723	1	ENST00000342988.3:c.1000C>T	p.Gln334Ter	p.Q334*	ENST00000342988	NM_005359.5	334	Cag/Tag																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7117084	7117084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	36	761	1	ENST00000302850.5:c.4132C>T	p.Arg1378Trp	p.R1378W	ENST00000302850	NM_000208.2	1378	Cgg/Tgg																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15355080	15355080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	35	244	0	ENST00000263377.2:c.2543C>T	p.Pro848Leu	p.P848L	ENST00000263377	NM_058243.2	848	cCa/cTa																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17948818	17948818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	30	865	0	ENST00000458235.1:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000458235	NM_000215.3	542	Gag/Aag																																												NEWRECORD																																		
MEF2B	0	MSKCC	GRCh37	19	19257388	19257388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			63	29	473	0	ENST00000162023.5:c.745C>T	p.Pro249Ser	p.P249S	ENST00000162023		249	Ccc/Tcc																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9525051	9525051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	38	801	0	ENST00000353224.5:c.1834C>T	p.Pro612Ser	p.P612S	ENST00000353224	NM_177990.2	612	Cct/Tct																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31017788	31017788	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	35	527	0	ENST00000375687.4:c.650T>A	p.Ile217Asn	p.I217N	ENST00000375687	NM_015338.5	217	aTt/aAt																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42840342	42840342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	56	475	0	ENST00000398585.3:c.1406G>A	p.Gly469Glu	p.G469E	ENST00000398585	NM_001135099.1	469	gGg/gAg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938022	76938022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	56	482	0	ENST00000373344.5:c.2726C>T	p.Pro909Leu	p.P909L	ENST00000373344	NM_000489.3	909	cCt/cTt																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142274876	142274877	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	31	588	0	ENST00000350721.4:c.2183dup	p.Leu728PhefsTer7	p.L728Ffs*7	ENST00000350721	NM_001184.3	728	tta/ttTa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579547	7579552	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGAC	GGGGAC	AGCA			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	25	501	0	ENST00000269305.4:c.135_140delinsTGCT	p.Ser46AlafsTer5	p.S46Afs*5	ENST00000269305	NM_001126112.2	45	ctGTCCCCg/ctTGCTg																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17953135	17953136	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	13	410	0	ENST00000458235.1:c.850_851delinsAA	p.Gly284Lys	p.G284K	ENST00000458235	NM_000215.3	284	GGa/AAa																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36171735	36171736	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	69	408	0	ENST00000300305.3:c.829_830delinsTT	p.Pro277Leu	p.P277L	ENST00000300305		277	CCa/TTa																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66509102	66509103	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			161	62	702	0	ENST00000273854.3:c.224_225delinsAA	p.Trp75Ter	p.W75*	ENST00000273854	NM_004439.5	75	tGG/tAA																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98239111	98239112	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0001229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	59	482	0	ENST00000331920.6:c.1531_1532delinsAA	p.Gly511Asn	p.G511N	ENST00000331920	NM_000264.3	511	GGt/AAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	275	605	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	585	415	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27024001	27024002	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	26	86	0	ENST00000324856.7:c.1113dup	p.Gln372AlafsTer28	p.Q372Afs*28	ENST00000324856	NM_006015.4	369	-/G																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106649	27106649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	165	362	0	ENST00000324856.7:c.6260G>A	p.Gly2087Glu	p.G2087E	ENST00000324856	NM_006015.4	2087	gGa/gAa																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971101	21971102	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTC			P-0009870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	17	140	0	ENST00000304494.5:c.256_257insGACGGCGCGGAGCCCAACTGCGCCGACCCCGCCACTCTCACCCGACCCGTGCACGACGCTG	p.Ala86GlyfsTer54	p.A86Gfs*54	ENST00000304494	NM_000077.4	86	gcc/gGACGGCGCGGAGCCCAACTGCGCCGACCCCGCCACTCTCACCCGACCCGTGCACGACGCTGcc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971101	21971102	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTC			P-0009870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	17	140	0	ENST00000304494.5:c.256_257insGACGGCGCGGAGCCCAACTGCGCCGACCCCGCCACTCTCACCCGACCCGTGCACGACGCTG	p.Ala86GlyfsTer54	p.A86Gfs*54	ENST00000304494	NM_000077.4	86	gcc/gGACGGCGCGGAGCCCAACTGCGCCGACCCCGCCACTCTCACCCGACCCGTGCACGACGCTGcc																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971101	21971102	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGCGTCGTGCACGGGTCGGGTGAGAGTGGCGGGGTCGGCGCAGTTGGGCTCCGCGCCGTC			P-0009870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	17	140	0	ENST00000304494.5:c.256_257insGACGGCGCGGAGCCCAACTGCGCCGACCCCGCCACTCTCACCCGACCCGTGCACGACGCTG	p.Ala86GlyfsTer54	p.A86Gfs*54	ENST00000304494	NM_000077.4	86	gcc/gGACGGCGCGGAGCCCAACTGCGCCGACCCCGCCACTCTCACCCGACCCGTGCACGACGCTGcc																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	66	389	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	26	233	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	67	466	1	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81339478	81339478	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	50	689	0	ENST00000222390.5:c.1526T>G	p.Val509Gly	p.V509G	ENST00000222390	NM_000601.4	509	gTt/gGt																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32421508	32421508	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	49	226	0	ENST00000332351.3:c.1084T>C	p.Phe362Leu	p.F362L	ENST00000332351	NM_024426.4	362	Ttc/Ctc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175522	112175534	+	frameshift_variant	Frame_Shift_Del	DEL	AGTGGAATGGTAA	AGTGGAATGGTAA	-			P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	57	340	0	ENST00000257430.4:c.4231_4243delAGTGGAATGGTAA	p.Ser1411ValfsTer4	p.S1411Vfs*4	ENST00000257430	NM_000038.5	1411	AGTGGAATGGTAAgt/gt																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47044727	47044728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	75	233	0	ENST00000329236.7:c.1894dup	p.Ser632LysfsTer10	p.S632Kfs*10	ENST00000329236	NM_001204466.1	631	-/A																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	35	282	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108114816	108114816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	132	336	0	ENST00000278616.4:c.633C>A	p.Asp211Glu	p.D211E	ENST00000278616	NM_000051.3	211	gaC/gaA																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66943551	66943551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	193	294	0	ENST00000374690.3:c.2631C>G	p.Phe877Leu	p.F877L	ENST00000374690	NM_000044.3	877	ttC/ttG																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67592049	67592050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0005428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	203	436	0	ENST00000274335.5:c.1866_1867insGG	p.Thr623GlyfsTer40	p.T623Gfs*40	ENST00000274335		622	aag/aaGGg																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056465	26056466	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0005428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	92	147	0	ENST00000343677.2:c.191_192delAA	p.Lys64SerfsTer8	p.K64Sfs*8	ENST00000343677	NM_005319.3	64	aAA/a																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	107	577	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48936984	48936984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	68	420	0	ENST00000267163.4:c.752G>A	p.Arg251Gln	p.R251Q	ENST00000267163	NM_000321.2	251	cGa/cAa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	189	428	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178951919	178951919	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	197	413	0	ENST00000263967.3:c.2974C>T	p.Arg992Ter	p.R992*	ENST00000263967	NM_006218.2	992	Cga/Tga																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5078403	5078403	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	34	307	0	ENST00000381652.3:c.2090T>G	p.Leu697Arg	p.L697R	ENST00000381652	NM_004972.3	697	cTt/cGt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151875096	151875096	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	53	106	0	ENST00000262189.6:c.7443-1G>T		p.X2481_splice	ENST00000262189	NM_170606.2	2481																																													NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7163084	7163084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	74	570	0	ENST00000302850.5:c.1988C>T	p.Ala663Val	p.A663V	ENST00000302850	NM_000208.2	663	gCg/gTg																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142281802	142281802	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	159	409	1	ENST00000350721.4:c.442G>T	p.Glu148Ter	p.E148*	ENST00000350721	NM_001184.3	148	Gaa/Taa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	167	376	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16254906	16254906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	85	425	1	ENST00000375759.3:c.2171G>A	p.Arg724Gln	p.R724Q	ENST00000375759	NM_015001.2	724	cGa/cAa																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50481162	50481162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	333	478	0	ENST00000394963.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000394963	NM_003076.4	183	cGa/cAa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117642495	117642495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs9489124		P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	111	665	0	ENST00000368508.3:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000368508	NM_002944.2	1902	Gaa/Aaa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828383	72828383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	257	630	1	ENST00000268489.5:c.8198G>A	p.Arg2733His	p.R2733H	ENST00000268489	NM_006885.3	2733	cGt/cAt																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70345913	70345913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	66	599	3	ENST00000374080.3:c.2450G>A	p.Arg817His	p.R817H	ENST00000374080		817	cGc/cAc																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	398917	398917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	146	327	0	ENST00000380956.4:c.727G>A	p.Glu243Lys	p.E243K	ENST00000380956	NM_001195286.1	243	Gaa/Aaa																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	198	454	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624262	89624263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	71	183	0	ENST00000371953.3:c.40dup	p.Arg14LysfsTer30	p.R14Kfs*30	ENST00000371953	NM_000314.4	12	-/A																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151856027	151856027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	80	667	2	ENST00000262189.6:c.11591G>A	p.Arg3864His	p.R3864H	ENST00000262189	NM_170606.2	3864	cGc/cAc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	192	452	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123243237	123243237	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55774317		P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	298	671	1	ENST00000358487.5:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000358487	NM_000141.4	759	cGa/cAa																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2951852	2951852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	57	502	0	ENST00000396946.4:c.3098C>T	p.Ala1033Val	p.A1033V	ENST00000396946	NM_032415.4	1033	gCg/gTg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42041074	42041074	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	318	694	2	ENST00000219905.7:c.5452C>T	p.Arg1818Ter	p.R1818*	ENST00000219905	NM_001164273.1	1818	Cga/Tga																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72827732	72827732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	275	687	0	ENST00000268489.5:c.8849G>A	p.Arg2950His	p.R2950H	ENST00000268489	NM_006885.3	2950	cGc/cAc																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53245350	53245350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	144	642	1	ENST00000375401.3:c.687G>T	p.Lys229Asn	p.K229N	ENST00000375401	NM_004187.3	229	aaG/aaT																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65310506	65310506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	82	566	1	ENST00000342505.4:c.2182G>A	p.Asp728Asn	p.D728N	ENST00000342505	NM_002227.2	728	Gac/Aac																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241661199	241661199	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201115573		P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	211	490	0	ENST00000366560.3:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000366560	NM_000143.3	488	Gaa/Aaa																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	39	534	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46230405	46230405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	69	395	0	ENST00000334344.6:c.739C>T	p.Arg247Cys	p.R247C	ENST00000334344	NM_152641.2	247	Cgt/Tgt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27102084	27102084	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	281	583	1	ENST00000324856.7:c.5010G>A	p.Trp1670Ter	p.W1670*	ENST00000324856	NM_006015.4	1670	tgG/tgA																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198270084	198270084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	87	438	0	ENST00000335508.6:c.1352G>A	p.Arg451Gln	p.R451Q	ENST00000335508	NM_012433.2	451	cGa/cAa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47108598	47108598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	164	414	3	ENST00000409792.3:c.6071G>A	p.Arg2024Gln	p.R2024Q	ENST00000409792	NM_014159.6	2024	cGa/cAa																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93956553	93956553	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	555	625	1	ENST00000369303.4:c.2683C>T	p.Arg895Ter	p.R895*	ENST00000369303	NM_004440.3	895	Cga/Tga																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39609382	39609382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	85	423	1	ENST00000262039.4:c.1684G>A	p.Glu562Lys	p.E562K	ENST00000262039	NM_002647.2	562	Gaa/Aaa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72845640	72845640	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148354034		P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	69	682	1	ENST00000268489.5:c.3700G>A	p.Asp1234Asn	p.D1234N	ENST00000268489	NM_006885.3	1234	Gat/Aat																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542861	187542861	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	289	410	1	ENST00000441802.2:c.4879C>T	p.Arg1627Ter	p.R1627*	ENST00000441802	NM_005245.3	1627	Cga/Tga																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20483132	20483132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	44	455	0	ENST00000346618.3:c.865G>A	p.Glu289Lys	p.E289K	ENST00000346618	NM_001949.4	289	Gag/Aag																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55575630	55575630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	79	534	0	ENST00000288135.5:c.1156G>A	p.Glu386Lys	p.E386K	ENST00000288135	NM_000222.2	386	Gaa/Aaa																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1025543	1025543	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	101	499	0	ENST00000358495.3:c.832C>T	p.Arg278Ter	p.R278*	ENST00000358495	NM_134424.2	278	Cga/Tga																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76907705	76907705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	309	835	0	ENST00000373344.5:c.4456G>T	p.Asp1486Tyr	p.D1486Y	ENST00000373344	NM_000489.3	1486	Gat/Tat																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8518262	8518262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	43	413	0	ENST00000356435.5:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000356435		377	Cgc/Tgc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624245	89624245	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	30	103	0	ENST00000371953.3:c.19G>T	p.Glu7Ter	p.E7*	ENST00000371953	NM_000314.4	7	Gag/Tag																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	71873237	71873237	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	59	601	0	ENST00000357731.5:c.957G>T	p.Gln319His	p.Q319H	ENST00000357731	NM_173808.2	319	caG/caT																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10291528	10291528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	220	578	0	ENST00000340748.4:c.151G>A	p.Glu51Lys	p.E51K	ENST00000340748		51	Gaa/Aaa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187521385	187521385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	169	416	0	ENST00000441802.2:c.11770C>T	p.Arg3924Cys	p.R3924C	ENST00000441802	NM_005245.3	3924	Cgc/Tgc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16089913	16089913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	44	481	0	ENST00000268712.3:c.197G>A	p.Arg66Gln	p.R66Q	ENST00000268712	NM_006311.3	66	cGa/cAa																																												NEWRECORD																																		
MAPK1	0	MSKCC	GRCh37	22	22162107	22162107	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	66	331	1	ENST00000215832.6:c.148C>T	p.Arg50Ter	p.R50*	ENST00000215832	NM_002745.4	50	Cga/Tga																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100608897	100608897	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	282	616	0	ENST00000308731.7:c.1711T>C	p.Tyr571His	p.Y571H	ENST00000308731	NM_000061.2	571	Tat/Cat																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	90	440	0	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16245490	16245490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	164	446	0	ENST00000375759.3:c.1465G>A	p.Val489Ile	p.V489I	ENST00000375759	NM_015001.2	489	Gtt/Att																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36931974	36931974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	92	597	0	ENST00000361632.4:c.2495C>T	p.Ala832Val	p.A832V	ENST00000361632		832	gCg/gTg																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46740305	46740305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	49	488	0	ENST00000371975.4:c.1785G>T	p.Trp595Cys	p.W595C	ENST00000371975	NM_003579.3	595	tgG/tgT																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65313333	65313333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	96	544	2	ENST00000342505.4:c.1781G>T	p.Arg594Ile	p.R594I	ENST00000342505	NM_002227.2	594	aGa/aTa																																												NEWRECORD																																		
VTCN1	0	MSKCC	GRCh37	1	117699514	117699514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138215115		P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	61	283	1	ENST00000369458.3:c.127G>A	p.Ala43Thr	p.A43T	ENST00000369458	NM_024626.3	43	Gcc/Acc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120497685	120497685	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	163	353	0	ENST00000256646.2:c.2197A>G	p.Asn733Asp	p.N733D	ENST00000256646	NM_024408.3	733	Aac/Gac																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162737131	162737131	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	125	409	2	ENST00000367921.3:c.1275G>A	p.Trp425Ter	p.W425*	ENST00000367921	NM_006182.2	425	tgG/tgA																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48027661	48027661	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	47	225	0	ENST00000234420.5:c.2539G>T	p.Glu847Ter	p.E847*	ENST00000234420	NM_000179.2	847	Gaa/Taa																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48027958	48027958	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	175	443	1	ENST00000234420.5:c.2836G>T	p.Glu946Ter	p.E946*	ENST00000234420	NM_000179.2	946	Gaa/Taa																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61719704	61719704	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	45	470	0	ENST00000401558.2:c.1564A>C	p.Lys522Gln	p.K522Q	ENST00000401558	NM_003400.3	522	Aag/Cag																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61726957	61726957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	225	470	0	ENST00000401558.2:c.481G>A	p.Glu161Lys	p.E161K	ENST00000401558	NM_003400.3	161	Gaa/Aaa																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128018861	128018861	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	88	607	0	ENST00000285398.2:c.2007A>C	p.Glu669Asp	p.E669D	ENST00000285398	NM_000122.1	669	gaA/gaC																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225339002	225339002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	175	560	0	ENST00000264414.4:c.2267G>A	p.Arg756Gln	p.R756Q	ENST00000264414	NM_003590.4	756	cGa/cAa																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227661672	227661672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	34	361	2	ENST00000305123.5:c.1783C>T	p.Arg595Trp	p.R595W	ENST00000305123	NM_005544.2	595	Cgg/Tgg																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37089035	37089035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	46	408	1	ENST00000231790.2:c.1757C>T	p.Ala586Val	p.A586V	ENST00000231790	NM_000249.3	586	gCc/gTc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47098600	47098600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	189	483	0	ENST00000409792.3:c.6674T>C	p.Val2225Ala	p.V2225A	ENST00000409792	NM_014159.6	2225	gTg/gCg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47161943	47161943	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	156	363	0	ENST00000409792.3:c.4183A>C	p.Lys1395Gln	p.K1395Q	ENST00000409792	NM_014159.6	1395	Aaa/Caa																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49724623	49724623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	100	426	0	ENST00000449682.2:c.566C>T	p.Ala189Val	p.A189V	ENST00000449682	NM_020998.3	189	gCt/gTt																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89478300	89478300	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	96	328	0	ENST00000336596.2:c.2119T>G	p.Leu707Val	p.L707V	ENST00000336596	NM_005233.5	707	Ttg/Gtg																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134873115	134873115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	163	416	0	ENST00000398015.3:c.1419G>T	p.Glu473Asp	p.E473D	ENST00000398015	NM_004441.4	473	gaG/gaT																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134920512	134920512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	42	424	1	ENST00000398015.3:c.2327C>A	p.Pro776His	p.P776H	ENST00000398015	NM_004441.4	776	cCc/cAc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142242849	142242849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	42	368	0	ENST00000350721.4:c.4138G>T	p.Asp1380Tyr	p.D1380Y	ENST00000350721	NM_001184.3	1380	Gat/Tat																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142274805	142274805	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	78	386	0	ENST00000350721.4:c.2255A>C	p.Glu752Ala	p.E752A	ENST00000350721	NM_001184.3	752	gAa/gCa																																												NEWRECORD																																		
DCUN1D1	0	MSKCC	GRCh37	3	182679036	182679036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	64	371	0	ENST00000292782.4:c.498G>T	p.Lys166Asn	p.K166N	ENST00000292782	NM_020640.2	166	aaG/aaT																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66280072	66280072	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	95	470	0	ENST00000273854.3:c.1617A>C	p.Gln539His	p.Q539H	ENST00000273854	NM_004439.5	539	caA/caC																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66361152	66361152	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	88	481	0	ENST00000273854.3:c.1020G>T	p.Lys340Asn	p.K340N	ENST00000273854	NM_004439.5	340	aaG/aaT																																												NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143094904	143094904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	190	553	0	ENST00000262992.4:c.1240C>A	p.Leu414Ile	p.L414I	ENST00000262992	NM_001101669.1	414	Ctc/Atc																																												NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143159099	143159099	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1332432216		P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	141	442	0	ENST00000262992.4:c.754C>T	p.Arg252Ter	p.R252*	ENST00000262992	NM_001101669.1	252	Cga/Tga																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187509928	187509928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	51	330	1	ENST00000441802.2:c.13585G>A	p.Ala4529Thr	p.A4529T	ENST00000441802	NM_005245.3	4529	Gcg/Acg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187541438	187541438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	52	499	0	ENST00000441802.2:c.6302G>A	p.Arg2101His	p.R2101H	ENST00000441802	NM_005245.3	2101	cGc/cAc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542729	187542729	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	50	487	1	ENST00000441802.2:c.5011G>T	p.Glu1671Ter	p.E1671*	ENST00000441802	NM_005245.3	1671	Gaa/Taa																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	251530	251530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	71	205	0	ENST00000264932.6:c.1741G>A	p.Gly581Arg	p.G581R	ENST00000264932	NM_004168.2	581	Gga/Aga																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38945794	38945794	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	141	347	0	ENST00000357387.3:c.4432A>C	p.Asn1478His	p.N1478H	ENST00000357387	NM_152756.3	1478	Aat/Cat																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177960	56177960	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	262	594	0	ENST00000399503.3:c.2933T>G	p.Leu978Ter	p.L978*	ENST00000399503	NM_005921.1	978	tTa/tGa																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86628427	86628427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	44	257	0	ENST00000274376.6:c.796G>A	p.Glu266Lys	p.E266K	ENST00000274376	NM_002890.2	266	Gaa/Aaa																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86670680	86670680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	78	315	0	ENST00000274376.6:c.1958G>A	p.Arg653Lys	p.R653K	ENST00000274376	NM_002890.2	653	aGa/aAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175183	112175183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	23	166	0	ENST00000257430.4:c.3892T>C	p.Ser1298Pro	p.S1298P	ENST00000257430	NM_000038.5	1298	Tct/Cct																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176694716	176694716	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	210	530	1	ENST00000439151.2:c.5300A>G	p.Tyr1767Cys	p.Y1767C	ENST00000439151	NM_022455.4	1767	tAc/tGc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180043465	180043465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	34	399	0	ENST00000261937.6:c.3121C>T	p.Arg1041Trp	p.R1041W	ENST00000261937	NM_182925.4	1041	Cgg/Tgg																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29912175	29912175	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	19	128	0	ENST00000376809.5:c.895+1G>A		p.X299_splice	ENST00000376809	NM_002116.7	299																																													NEWRECORD																																		
VEGFA	0	MSKCC	GRCh37	6	43749748	43749748	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	112	611	0	ENST00000523873.1:c.601A>C	p.Thr201Pro	p.T201P	ENST00000523873		201	Acg/Ccg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117609786	117609786	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs141670885		P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	208	584	0	ENST00000368508.3:c.6913G>T	p.Glu2305Ter	p.E2305*	ENST00000368508	NM_002944.2	2305	Gaa/Taa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117647532	117647532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	189	581	1	ENST00000368508.3:c.5412G>T	p.Lys1804Asn	p.K1804N	ENST00000368508	NM_002944.2	1804	aaG/aaT																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117686228	117686228	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	85	354	0	ENST00000368508.3:c.3113A>C	p.Glu1038Ala	p.E1038A	ENST00000368508	NM_002944.2	1038	gAa/gCa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117707025	117707025	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	59	284	0	ENST00000368508.3:c.2126-1G>T		p.X709_splice	ENST00000368508	NM_002944.2	709																																													NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117715847	117715847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	150	421	0	ENST00000368508.3:c.911G>A	p.Arg304Lys	p.R304K	ENST00000368508	NM_002944.2	304	aGa/aAa																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157256631	157256631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	217	460	0	ENST00000346085.5:c.1958C>T	p.Ser653Phe	p.S653F	ENST00000346085	NM_020732.3	653	tCt/tTt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157406006	157406006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	180	513	2	ENST00000346085.5:c.2248C>T	p.Arg750Ter	p.R750*	ENST00000346085	NM_020732.3	750	Cga/Tga																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81381567	81381567	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	192	428	2	ENST00000222390.5:c.494C>T	p.Ser165Leu	p.S165L	ENST00000222390	NM_000601.4	165	tCg/tTg																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116418859	116418859	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	80	404	0	ENST00000397752.3:c.3370T>G	p.Phe1124Val	p.F1124V	ENST00000397752	NM_000245.2	1124	Ttt/Gtt																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116422142	116422142	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	59	305	0	ENST00000397752.3:c.3623G>T	p.Arg1208Ile	p.R1208I	ENST00000397752	NM_000245.2	1208	aGa/aTa																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128850942	128850942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	65	292	0	ENST00000249373.3:c.1789G>A	p.Asp597Asn	p.D597N	ENST00000249373	NM_005631.4	597	Gac/Aac																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151842334	151842334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	206	485	0	ENST00000262189.6:c.14078G>A	p.Arg4693Gln	p.R4693Q	ENST00000262189	NM_170606.2	4693	cGa/cAa																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152346115	152346115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	285	682	1	ENST00000359321.1:c.455C>T	p.Ser152Leu	p.S152L	ENST00000359321	NM_005431.1	152	tCa/tTa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8485903	8485903	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	49	565	0	ENST00000356435.5:c.2914A>T	p.Ile972Phe	p.I972F	ENST00000356435		972	Att/Ttt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8527354	8527354	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	29	251	0	ENST00000356435.5:c.542-1G>T		p.X181_splice	ENST00000356435		181																																													NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93606578	93606578	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	121	320	1	ENST00000375746.1:c.398A>G	p.Lys133Arg	p.K133R	ENST00000375746	NM_001174167.1	133	aAg/aGg																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101909998	101909998	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	154	426	0	ENST00000374994.4:c.1318G>T	p.Glu440Ter	p.E440*	ENST00000374994	NM_004612.2	440	Gaa/Taa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70406300	70406300	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	195	517	0	ENST00000373644.4:c.3814T>C	p.Ser1272Pro	p.S1272P	ENST00000373644	NM_030625.2	1272	Tcc/Ccc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70426835	70426835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	167	389	0	ENST00000373644.4:c.4495C>A	p.Leu1499Ile	p.L1499I	ENST00000373644	NM_030625.2	1499	Ctt/Att																																												NEWRECORD																																		
SUFU	0	MSKCC	GRCh37	10	104263935	104263935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	167	278	0	ENST00000369902.3:c.26C>T	p.Ala9Val	p.A9V	ENST00000369902	NM_016169.3	9	gCc/gTc																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32456315	32456315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	37	470	1	ENST00000332351.3:c.577G>A	p.Ala193Thr	p.A193T	ENST00000332351	NM_024426.4	193	Gcc/Acc																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100920785	100920785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	64	579	0	ENST00000325455.5:c.2363G>T	p.Arg788Leu	p.R788L	ENST00000325455	NM_001202474.3	788	cGg/cTg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108115595	108115595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	204	453	0	ENST00000278616.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000278616	NM_000051.3	248	cGa/cAa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108115681	108115681	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	111	282	0	ENST00000278616.4:c.829G>T	p.Glu277Ter	p.E277*	ENST00000278616	NM_000051.3	277	Gaa/Taa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108196906	108196906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	89	363	0	ENST00000278616.4:c.6929G>A	p.Ser2310Asn	p.S2310N	ENST00000278616	NM_000051.3	2310	aGt/aAt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344108	118344108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	31	315	0	ENST00000534358.1:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000534358	NM_005933.3	745	cGa/cAa																																												NEWRECORD																																		
CHEK1	0	MSKCC	GRCh37	11	125503099	125503099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140276570		P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	69	457	0	ENST00000428830.2:c.466C>T	p.Arg156Trp	p.R156W	ENST00000428830	NM_001114121.2	156	Cgg/Tgg																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4409167	4409167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	126	344	1	ENST00000261254.3:c.862G>A	p.Asp288Asn	p.D288N	ENST00000261254	NM_001759.3	288	Gac/Aac																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12871831	12871831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	29	231	0	ENST00000228872.4:c.548C>A	p.Ser183Tyr	p.S183Y	ENST00000228872	NM_004064.3	183	tCt/tAt																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18573931	18573931	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	78	401	0	ENST00000266497.5:c.2249A>C	p.Asn750Thr	p.N750T	ENST00000266497		750	aAt/aCt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49425078	49425078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	103	629	0	ENST00000301067.7:c.13410G>T	p.Lys4470Asn	p.K4470N	ENST00000301067	NM_003482.3	4470	aaG/aaT																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49436656	49436656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	162	422	0	ENST00000301067.7:c.5650C>T	p.Pro1884Ser	p.P1884S	ENST00000301067	NM_003482.3	1884	Ccc/Tcc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115121002	115121002	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	92	282	0	ENST00000257566.3:c.4A>C	p.Ser2Arg	p.S2R	ENST00000257566	NM_016569.3	2	Agc/Cgc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133225538	133225538	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	201	469	0	ENST00000320574.5:c.4126G>T	p.Glu1376Ter	p.E1376*	ENST00000320574	NM_006231.2	1376	Gag/Tag																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32910656	32910656	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	275	725	0	ENST00000380152.3:c.2164A>C	p.Lys722Gln	p.K722Q	ENST00000380152		722	Aaa/Caa																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48942665	48942665	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	61	414	0	ENST00000267163.4:c.1052T>G	p.Phe351Cys	p.F351C	ENST00000267163	NM_000321.2	351	tTt/tGt																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48953731	48953731	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	92	294	0	ENST00000267163.4:c.1334G>A	p.Arg445Gln	p.R445Q	ENST00000267163	NM_000321.2	445	cGa/cAa																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988537	36988537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	61	630	0	ENST00000354822.5:c.116C>T	p.Thr39Ile	p.T39I	ENST00000354822	NM_001079668.2	39	aCt/aTt																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95596408	95596408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	36	375	0	ENST00000343455.3:c.560G>A	p.Arg187Gln	p.R187Q	ENST00000343455	NM_177438.2	187	cGa/cAa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41961198	41961198	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	132	759	0	ENST00000219905.7:c.106A>C	p.Thr36Pro	p.T36P	ENST00000219905	NM_001164273.1	36	Act/Cct																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67479738	67479738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	87	536	0	ENST00000327367.4:c.1045G>A	p.Ala349Thr	p.A349T	ENST00000327367	NM_005902.3	349	Gct/Act																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88669537	88669537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	244	524	0	ENST00000360948.2:c.1361A>G	p.Asn454Ser	p.N454S	ENST00000360948	NM_001012338.2	454	aAc/aGc																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91292990	91292990	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	73	390	0	ENST00000355112.3:c.492G>T	p.Glu164Asp	p.E164D	ENST00000355112	NM_000057.2	164	gaG/gaT																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	396473	396473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	226	563	0	ENST00000262320.3:c.553G>A	p.Ala185Thr	p.A185T	ENST00000262320	NM_003502.3	185	Gcc/Acc																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2221334	2221334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	207	529	4	ENST00000326181.6:c.418G>T	p.Asp140Tyr	p.D140Y	ENST00000326181	NM_032271.2	140	Gac/Tac																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3824691	3824691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	153	437	1	ENST00000262367.5:c.2162T>C	p.Met721Thr	p.M721T	ENST00000262367	NM_004380.2	721	aTg/aCg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3831302	3831302	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	29	313	0	ENST00000262367.5:c.1579A>C	p.Asn527His	p.N527H	ENST00000262367	NM_004380.2	527	Aat/Cat																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10032032	10032032	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	236	620	0	ENST00000330684.3:c.791A>G	p.Asn264Ser	p.N264S	ENST00000330684	NM_001134407.1	264	aAc/aGc																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23646806	23646806	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	195	584	0	ENST00000261584.4:c.1061C>A	p.Ser354Tyr	p.S354Y	ENST00000261584	NM_024675.3	354	tCt/tAt																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56864504	56864504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	296	723	0	ENST00000308159.5:c.992T>C	p.Leu331Pro	p.L331P	ENST00000308159	NM_014669.4	331	cTg/cCg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828029	72828029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1502	98	887	1	ENST00000268489.5:c.8552G>T	p.Gly2851Val	p.G2851V	ENST00000268489	NM_006885.3	2851	gGc/gTc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828767	72828767	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	260	756	0	ENST00000268489.5:c.7814C>G	p.Ser2605Ter	p.S2605*	ENST00000268489	NM_006885.3	2605	tCa/tGa																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627803	37627803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	128	588	0	ENST00000447079.4:c.1718T>C	p.Phe573Ser	p.F573S	ENST00000447079	NM_015083.1	573	tTt/tCt																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37864776	37864776	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs185670819		P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	120	309	0	ENST00000269571.5:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000269571		143	cGa/cAa																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47684637	47684637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	188	443	0	ENST00000347630.2:c.812A>G	p.Asp271Gly	p.D271G	ENST00000347630	NM_001007230.1	271	gAt/gGt																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740750	58740750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	288	719	3	ENST00000305921.3:c.1655G>A	p.Arg552Gln	p.R552Q	ENST00000305921	NM_003620.3	552	cGa/cAa																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59926523	59926523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	206	511	1	ENST00000259008.2:c.474G>T	p.Lys158Asn	p.K158N	ENST00000259008	NM_032043.2	158	aaG/aaT																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533560	63533560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	51	571	1	ENST00000307078.5:c.1594G>A	p.Glu532Lys	p.E532K	ENST00000307078	NM_004655.3	532	Gag/Aag																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78617526	78617526	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	156	333	0	ENST00000306801.3:c.266-2A>G		p.X89_splice	ENST00000306801	NM_020761.2	89																																													NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39609349	39609349	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201418439		P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	48	434	2	ENST00000262039.4:c.1651C>T	p.Arg551Trp	p.R551W	ENST00000262039	NM_002647.2	551	Cgg/Tgg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2216658	2216658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	71	374	1	ENST00000398665.3:c.2302G>A	p.Ala768Thr	p.A768T	ENST00000398665	NM_032482.2	768	Gca/Aca																																												NEWRECORD																																		
DNAJB1	0	MSKCC	GRCh37	19	14626904	14626904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	146	779	0	ENST00000254322.2:c.871C>T	p.Pro291Ser	p.P291S	ENST00000254322	NM_006145.1	291	Cct/Tct																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17943395	17943395	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201643826		P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	243	586	0	ENST00000458235.1:c.2613G>T	p.Glu871Asp	p.E871D	ENST00000458235	NM_000215.3	871	gaG/gaT																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17946810	17946810	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs149316157		P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	47	531	3	ENST00000458235.1:c.1837C>T	p.Arg613Ter	p.R613*	ENST00000458235	NM_000215.3	613	Cga/Tga																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31387111	31387111	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	198	411	0	ENST00000328111.2:c.1736C>A	p.Ser579Ter	p.S579*	ENST00000328111	NM_006892.3	579	tCa/tAa																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39726860	39726860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	142	312	0	ENST00000361337.2:c.858G>T	p.Met286Ile	p.M286I	ENST00000361337	NM_003286.2	286	atG/atT																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46268417	46268417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	276	715	0	ENST00000371998.3:c.2804C>T	p.Ser935Leu	p.S935L	ENST00000371998		935	tCa/tTa																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24159110	24159110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	122	313	1	ENST00000263121.7:c.782G>A	p.Arg261His	p.R261H	ENST00000263121	NM_003073.3	261	cGc/cAc																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29091160	29091160	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	120	253	0	ENST00000328354.6:c.1330A>C	p.Lys444Gln	p.K444Q	ENST00000328354	NM_007194.3	444	Aaa/Caa																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29121319	29121319	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	222	565	0	ENST00000328354.6:c.356A>C	p.Lys119Thr	p.K119T	ENST00000328354	NM_007194.3	119	aAa/aCa																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41574926	41574926	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	70	429	0	ENST00000263253.7:c.7211C>A	p.Ser2404Ter	p.S2404*	ENST00000263253	NM_001429.3	2404	tCa/tAa																																												NEWRECORD																																		
CRLF2	0	MSKCC	GRCh37	X	1314969	1314969	+	downstream_gene_variant	3'Flank	SNP	T	T	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	209	512	0				ENST00000381566																																															NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47429358	47429358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	199	633	2	ENST00000377045.4:c.1486G>A	p.Gly496Arg	p.G496R	ENST00000377045	NM_001654.4	496	Ggg/Agg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53223505	53223505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	46	289	0	ENST00000375401.3:c.3854C>A	p.Ala1285Asp	p.A1285D	ENST00000375401	NM_004187.3	1285	gCc/gAc																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410075	63410075	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201899164		P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	47	638	0	ENST00000330258.3:c.3092G>A	p.Gly1031Asp	p.G1031D	ENST00000330258	NM_152424.3	1031	gGc/gAc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765047	66765047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	234	638	1	ENST00000374690.3:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000374690	NM_000044.3	20	cGa/cAa																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70343020	70343020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	200	532	0	ENST00000374080.3:c.1561C>T	p.Arg521Cys	p.R521C	ENST00000374080		521	Cgt/Tgt																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76778774	76778774	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	104	663	0	ENST00000373344.5:c.6805G>T	p.Glu2269Ter	p.E2269*	ENST00000373344	NM_000489.3	2269	Gaa/Taa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76778843	76778843	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	224	649	1	ENST00000373344.5:c.6736G>T	p.Glu2246Ter	p.E2246*	ENST00000373344	NM_000489.3	2246	Gaa/Taa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76874293	76874293	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	228	527	0	ENST00000373344.5:c.5429T>C	p.Met1810Thr	p.M1810T	ENST00000373344	NM_000489.3	1810	aTg/aCg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76891498	76891498	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	203	620	0	ENST00000373344.5:c.4607A>G	p.Lys1536Arg	p.K1536R	ENST00000373344	NM_000489.3	1536	aAg/aGg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938794	76938794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	230	551	2	ENST00000373344.5:c.1954G>A	p.Asp652Asn	p.D652N	ENST00000373344	NM_000489.3	652	Gat/Aat																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123215312	123215312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	216	602	1	ENST00000218089.9:c.2858G>A	p.Arg953Gln	p.R953Q	ENST00000218089	NM_001042749.1	953	cGa/cAa																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162722894	162722894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000242-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			151	80	256	0	ENST00000367921.3:c.92G>T	p.Arg31Leu	p.R31L	ENST00000367921	NM_006182.2	31	cGc/cTc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000242-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			164	68	466	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252962	36252962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000242-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			368	62	150	0	ENST00000300305.3:c.400G>C	p.Ala134Pro	p.A134P	ENST00000300305		134	Gct/Cct																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860461	151860462	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000242-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			231	61	363	0	ENST00000262189.6:c.10200dupT	p.Lys3401Ter	p.K3401*	ENST00000262189	NM_170606.2	3400	-/T																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	96	208	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	50	291	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	61	319	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98220389	98220389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	53	397	2	ENST00000331920.6:c.3074G>A	p.Arg1025His	p.R1025H	ENST00000331920	NM_000264.3	1025	cGc/cAc																																												NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	86	481	1	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	48	340	2	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																												NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	40	320	3	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	96	596	1	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32914070	32914070	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1473	126	674	1	ENST00000380152.3:c.5583delA	p.Val1862Ter	p.V1862*	ENST00000380152		1860	Aaa/aa																																												NEWRECORD																																		
NSD1	64324	MSKCC	GRCh37	5	176675269	176675269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	58	423	2	ENST00000439151.2:c.4591del	p.Met1531CysfsTer43	p.M1531Cfs*43	ENST00000439151	NM_022455.4	1529	Aaa/aa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023018	27023018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	17	39	0	ENST00000324856.7:c.124G>A	p.Ala42Thr	p.A42T	ENST00000324856	NM_006015.4	42	Gcg/Acg																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46740345	46740345	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138693255		P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	82	329	0	ENST00000371975.4:c.1825C>T	p.Arg609Ter	p.R609*	ENST00000371975	NM_003579.3	609	Cga/Tga																																												NEWRECORD																																		
FAM46C	0	MSKCC	GRCh37	1	118165837	118165837	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	58	270	0	ENST00000369448.3:c.347T>A	p.Leu116His	p.L116H	ENST00000369448	NM_017709.3	116	cTt/cAt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	213403209	213403209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	56	418	0	ENST00000342788.4:c.46G>A	p.Ala16Thr	p.A16T	ENST00000342788	NM_005235.2	16	Gcg/Acg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52623241	52623241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	49	275	0	ENST00000394830.3:c.2810C>T	p.Ala937Val	p.A937V	ENST00000394830	NM_018313.4	937	gCt/gTt																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134911460	134911460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	37	311	0	ENST00000398015.3:c.1925G>A	p.Gly642Asp	p.G642D	ENST00000398015	NM_004441.4	642	gGc/gAc																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86645099	86645099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	66	277	1	ENST00000274376.6:c.1171C>T	p.Arg391Trp	p.R391W	ENST00000274376	NM_002890.2	391	Cgg/Tgg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32170177	32170177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	50	310	0	ENST00000375023.3:c.3431G>A	p.Gly1144Asp	p.G1144D	ENST00000375023	NM_004557.3	1144	gGc/gAc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157522274	157522274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	67	377	0	ENST00000346085.5:c.4546G>A	p.Val1516Ile	p.V1516I	ENST00000346085	NM_020732.3	1516	Gtc/Atc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157525096	157525096	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	54	299	0	ENST00000346085.5:c.4991A>C	p.Asp1664Ala	p.D1664A	ENST00000346085	NM_020732.3	1664	gAt/gCt																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98239140	98239140	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	44	311	1	ENST00000331920.6:c.1504-1G>T		p.X502_splice	ENST00000331920	NM_000264.3	502																																													NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133729602	133729602	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	62	367	0	ENST00000318560.5:c.231T>A	p.Asp77Glu	p.D77E	ENST00000318560	NM_005157.4	77	gaT/gaA																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332170	70332170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	64	582	0	ENST00000373644.4:c.75C>A	p.Ser25Arg	p.S25R	ENST00000373644	NM_030625.2	25	agC/agA																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123263382	123263382	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148672240		P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	56	308	0	ENST00000358487.5:c.1361C>T	p.Thr454Met	p.T454M	ENST00000358487	NM_000141.4	454	aCg/aTg																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64136271	64136271	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	69	328	0	ENST00000334205.4:c.1428+2T>C		p.X476_splice	ENST00000334205	NM_003942.2	476																																													NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42041590	42041590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1299	126	679	1	ENST00000219905.7:c.5785C>T	p.Gln1929Ter	p.Q1929*	ENST00000219905	NM_001164273.1	1929	Cag/Tag																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66679701	66679701	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	46	406	0	ENST00000307102.5:c.16C>A	p.Pro6Thr	p.P6T	ENST00000307102	NM_002755.3	6	Ccg/Acg																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90631629	90631629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	59	300	1	ENST00000330062.3:c.640G>A	p.Ala214Thr	p.A214T	ENST00000330062	NM_002168.2	214	Gca/Aca																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10274258	10274258	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	10	119	0	ENST00000330684.3:c.11T>C	p.Val4Ala	p.V4A	ENST00000330684	NM_001134407.1	4	gTg/gCg																																												NEWRECORD																																		
SOCS1	0	MSKCC	GRCh37	16	11349011	11349011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	33	206	1	ENST00000332029.2:c.325C>T	p.Arg109Trp	p.R109W	ENST00000332029	NM_003745.1	109	Cgg/Tgg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842472	68842472	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	48	246	0	ENST00000261769.5:c.531+2T>C		p.X177_splice	ENST00000261769	NM_004360.3	177																																													NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15971268	15971268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	58	306	0	ENST00000268712.3:c.4681C>T	p.Arg1561Trp	p.R1561W	ENST00000268712	NM_006311.3	1561	Cgg/Tgg																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17118616	17118616	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112980409		P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	63	362	0	ENST00000285071.4:c.1315G>A	p.Val439Met	p.V439M	ENST00000285071	NM_144997.5	439	Gtg/Atg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610604	10610604	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	48	280	0	ENST00000171111.5:c.106A>G	p.Thr36Ala	p.T36A	ENST00000171111	NM_203500.1	36	Act/Gct																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11138563	11138563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	53	420	0	ENST00000344626.4:c.3319T>C	p.Ser1107Pro	p.S1107P	ENST00000344626	NM_003072.3	1107	Tcc/Ccc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15289931	15289931	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	66	421	0	ENST00000263388.2:c.3623A>C	p.Glu1208Ala	p.E1208A	ENST00000263388	NM_000435.2	1208	gAg/gCg																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50916766	50916766	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	63	491	0	ENST00000440232.2:c.2238C>G	p.Ser746Arg	p.S746R	ENST00000440232	NM_002691.3	746	agC/agG																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50918828	50918828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	79	508	2	ENST00000440232.2:c.2698C>A	p.His900Asn	p.H900N	ENST00000440232	NM_002691.3	900	Cac/Aac																																												NEWRECORD																																		
ICOSLG	0	MSKCC	GRCh37	21	45651293	45651293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	77	436	0	ENST00000407780.3:c.732G>T	p.Glu244Asp	p.E244D	ENST00000407780	NM_001283052.1	244	gaG/gaT																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39755427	39755427	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	60	341	1	ENST00000288319.7:c.1338delT	p.Phe446LeufsTer59	p.F446Lfs*59	ENST00000288319	NM_182918.3	446	ttT/tt																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152345768	152345769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	44	420	0	ENST00000359321.1:c.801dup	p.His268ThrfsTer11	p.H268Tfs*11	ENST00000359321	NM_005431.1	267	-/A																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59761147	59761147	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	80	351	0	ENST00000259008.2:c.3260del	p.Asn1087IlefsTer21	p.N1087Ifs*21	ENST00000259008	NM_032043.2	1087	aAt/at																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68863699	68863702	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAGT	AAGT	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	19	137	0	ENST00000261769.5:c.2439+5_2439+8del		p.X813_splice	ENST00000261769	NM_004360.3	813																																													NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114711299	114711301	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	79	365	0	ENST00000543371.1:c.318_320delCAT	p.Ile106del	p.I106del	ENST00000543371	NM_001198531.1	105	tTCAtc/ttc																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63554356	63554357	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	79	385	0	ENST00000307078.5:c.382_383del	p.Leu128ThrfsTer12	p.L128Tfs*12	ENST00000307078	NM_004655.3	128	TTa/a																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411812	63411813	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	48	319	0	ENST00000330258.3:c.1354dup	p.Glu452GlyfsTer8	p.E452Gfs*8	ENST00000330258	NM_152424.3	452	gaa/gGaa																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42796347	42796349	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	86	444	0	ENST00000575354.2:c.3001_3003del	p.Ser1001del	p.S1001del	ENST00000575354	NM_015125.3	999	cCCTcc/ccc																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856624	111856630	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGGCC	CCGGGCC	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	32	186	0	ENST00000341259.2:c.685_691del	p.Gly229MetfsTer47	p.G229Mfs*47	ENST00000341259	NM_005475.2	225	cgCCGGGCC/cg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49438567	49438569	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	56	326	0	ENST00000301067.7:c.4921_4923del	p.Lys1641del	p.K1641del	ENST00000301067	NM_003482.3	1641	AAG/-																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204736165	204736166	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	85	473	0	ENST00000302823.3:c.529dupT	p.Tyr177LeufsTer2	p.Y177Lfs*2	ENST00000302823	NM_005214.4	174	-/T																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10262139	10262139	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	74	548	3	ENST00000340748.4:c.2152delA	p.Met718CysfsTer59	p.M718Cfs*59	ENST00000340748		718	Atg/tg																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533938	63533939	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	20	168	0	ENST00000307078.5:c.1214_1215dup	p.Gly406ArgfsTer53	p.G406Rfs*53	ENST00000307078	NM_004655.3	405	-/AG																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91326110	91326110	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	75	335	0	ENST00000355112.3:c.2618del	p.Lys873ArgfsTer7	p.K873Rfs*7	ENST00000355112	NM_000057.2	872	Aaa/aa																																												NEWRECORD																																		
ID3	0	MSKCC	GRCh37	1	23885643	23885643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1383	110	515	0	ENST00000374561.5:c.275del	p.Pro92LeufsTer34	p.P92Lfs*34	ENST00000374561	NM_002167.4	92	cCt/ct																																												NEWRECORD																																		
FANCC	2176	MSKCC	GRCh37	9	97873817	97873817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	64	372	2	ENST00000289081.3:c.1257del	p.Thr420ArgfsTer27	p.T420Rfs*27	ENST00000289081	NM_000136.2	419	ccC/cc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56480325	56480326	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	58	326	0	ENST00000267101.3:c.437dup	p.Val147CysfsTer4	p.V147Cfs*4	ENST00000267101	NM_001982.3	144	-/G																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153245492	153245492	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	57	279	0	ENST00000281708.4:c.1699del	p.Asp567MetfsTer11	p.D567Mfs*11	ENST00000281708	NM_033632.3	567	Gat/at																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	28	299	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37089028	37089028	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	48	556	0	ENST00000231790.2:c.1750G>C	p.Asp584His	p.D584H	ENST00000231790	NM_000249.3	584	Gac/Cac																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47098963	47098963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	40	334	0	ENST00000409792.3:c.6311C>G	p.Ser2104Cys	p.S2104C	ENST00000409792	NM_014159.6	2104	tCt/tGt																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9520210	9520210	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	29	610	0	ENST00000353224.5:c.2059C>T	p.Gln687Ter	p.Q687*	ENST00000353224	NM_177990.2	687	Cag/Tag																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39933350	39933350	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	41	751	0	ENST00000378444.4:c.1249G>C	p.Asp417His	p.D417H	ENST00000378444	NM_001123385.1	417	Gac/Cac																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157502159	157502160	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	26	436	0	ENST00000346085.5:c.3192_3193insC	p.Asn1065GlnfsTer2	p.N1065Qfs*2	ENST00000346085	NM_020732.3	1064	-/C																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56152428	56152428	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	C	C	TT			P-0005526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	74	326	0	ENST00000399503.3:c.484delinsTT	p.Arg162LeufsTer2	p.R162Lfs*2	ENST00000399503	NM_005921.1	162	Cgt/TTgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000594-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	150	468	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0000594-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			671	291	327	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138409905	138409905	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000594-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	220	322	0	ENST00000289153.2:c.1973G>C	p.Arg658Thr	p.R658T	ENST00000289153	NM_006219.2	658	aGa/aCa																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29092966	29092966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000594-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	109	264	0	ENST00000328354.6:c.1018G>A	p.Glu340Lys	p.E340K	ENST00000328354	NM_007194.3	340	Gaa/Aaa																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119168143	119168144	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0000594-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	122	278	0	ENST00000264033.4:c.2205_2206delTA	p.Tyr735Ter	p.Y735*	ENST00000264033	NM_005188.3	735	TAt/t																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	108	417	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	48	164	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56167736	56167736	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	68	262	0	ENST00000399503.3:c.1302-1G>C		p.X434_splice	ENST00000399503	NM_005921.1	434																																													NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112154942	112154942	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	57	290	1	ENST00000257430.4:c.1213C>T	p.Arg405Ter	p.R405*	ENST00000257430	NM_000038.5	405	Cga/Tga																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64127730	64127730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	36	203	0	ENST00000334205.4:c.223C>T	p.Arg75Cys	p.R75C	ENST00000334205	NM_003942.2	75	Cgc/Tgc																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67473730	67473730	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	49	407	0	ENST00000327367.4:c.810C>G	p.Cys270Trp	p.C270W	ENST00000327367	NM_005902.3	270	tgC/tgG																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67479810	67479810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	64	447	1	ENST00000327367.4:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000327367	NM_005902.3	373	Cgc/Tgc																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37879798	37879798	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	37	186	0	ENST00000269571.5:c.2093A>T	p.Glu698Val	p.E698V	ENST00000269571		698	gAg/gTg																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45375019	45375019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	61	308	0	ENST00000262160.6:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000262160	NM_005901.5	275	tGt/tAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170782	112170782	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	72	484	0	ENST00000257430.4:c.1880del	p.Asn627ThrfsTer3	p.N627Tfs*3	ENST00000257430	NM_000038.5	626	acA/ac																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0002907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	1825	420	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974770	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGT			P-0002907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	61	215	0	ENST00000304494.5:c.52_57dup	p.Thr18_Ala19dup	p.T18_A19dup	ENST00000304494	NM_000077.4	18	-/ACGGCC																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974769	21974770	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGCCGT			P-0002907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	61	215	0	ENST00000304494.5:c.52_57dup	p.Thr18_Ala19dup	p.T18_A19dup	ENST00000304494	NM_000077.4	18	-/ACGGCC																																												NEWRECORD																																		
MCL1	0	MSKCC	GRCh37	1	150551772	150551772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	49	64	0	ENST00000369026.2:c.235C>G	p.Pro79Ala	p.P79A	ENST00000369026	NM_021960.4	79	Ccg/Gcg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412233	139412233	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	90	437	0	ENST00000277541.6:c.1412T>C	p.Ile471Thr	p.I471T	ENST00000277541	NM_017617.3	471	aTt/aCt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576872	7576872	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	265	380	0	ENST00000269305.4:c.974del	p.Gly325GlufsTer20	p.G325Efs*20	ENST00000269305	NM_001126112.2	325	gGa/ga																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48030639	48030640	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1361078163		P-0000751-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	106	621	1	ENST00000234420.5:c.3261dup	p.Phe1088LeufsTer5	p.F1088Lfs*5	ENST00000234420	NM_000179.2	1085	acc/aCcc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000751-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	134	590	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000751-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	71	173	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23641527	23641527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000751-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	150	566	0	ENST00000261584.4:c.1948G>C	p.Glu650Gln	p.E650Q	ENST00000261584	NM_024675.3	650	Gag/Cag																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11984788	11984788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000751-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	78	232	0	ENST00000353533.5:c.334G>T	p.Ala112Ser	p.A112S	ENST00000353533	NM_003010.3	112	Gct/Tct																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221946	1221946	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0000751-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			214	124	492	0	ENST00000326873.7:c.863-2A>C		p.X288_splice	ENST00000326873	NM_000455.4	288																																													NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	55	711	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16029445	16029446	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	80	937	4	ENST00000268712.3:c.1584dup	p.Glu529ArgfsTer7	p.E529Rfs*7	ENST00000268712	NM_006311.3	528	-/A																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152332899	152332899	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	63	559	0	ENST00000206249.3:c.1205T>A	p.Leu402Gln	p.L402Q	ENST00000206249	NM_000125.3	402	cTa/cAa																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209446	98209446	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	33	510	0	ENST00000331920.6:c.4092C>A	p.Tyr1364Ter	p.Y1364*	ENST00000331920	NM_000264.3	1364	taC/taA																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118373923	118373923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	12	718	0	ENST00000534358.1:c.7316C>G	p.Thr2439Ser	p.T2439S	ENST00000534358	NM_005933.3	2439	aCt/aGt																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115109920	115109920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	26	298	0	ENST00000257566.3:c.1958G>T	p.Ser653Ile	p.S653I	ENST00000257566	NM_016569.3	653	aGc/aTc																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061347	38061347	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	169	711	0	ENST00000250448.2:c.642G>C	p.Trp214Cys	p.W214C	ENST00000250448	NM_004496.3	214	tgG/tgC																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55575642	55575643	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	159	718	0	ENST00000288135.5:c.1169dup	p.Tyr390Ter	p.Y390*	ENST00000288135	NM_000222.2	390	tac/tAac																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060879	38060880	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	63	546	0	ENST00000250448.2:c.1109_1110del	p.Val370AlafsTer44	p.V370Afs*44	ENST00000250448	NM_004496.3	370	gTG/g																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717669	89717673	+	frameshift_variant	Frame_Shift_Del	DEL	ACACG	ACACG	-			P-0013510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	17	661	0	ENST00000371953.3:c.696_700del	p.Arg233GlyfsTer8	p.R233Gfs*8	ENST00000371953	NM_000314.4	232	ACACGa/a																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3779452	3779452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	18	482	0	ENST00000262367.5:c.5596C>T	p.Arg1866Cys	p.R1866C	ENST00000262367	NM_004380.2	1866	Cgc/Tgc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56495017	56495017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	19	366	0	ENST00000267101.3:c.3374G>A	p.Arg1125Gln	p.R1125Q	ENST00000267101	NM_001982.3	1125	cGg/cAg																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37673728	37673728	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	90	494	0	ENST00000447079.4:c.2882C>G	p.Pro961Arg	p.P961R	ENST00000447079	NM_015083.1	961	cCt/cGt																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5244223	5244223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	64	342	0	ENST00000357368.4:c.1259G>T	p.Arg420Leu	p.R420L	ENST00000357368	NM_002850.3	420	cGc/cTc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857074	9857075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	40	437	0	ENST00000330684.3:c.4326dup	p.Arg1443GlnfsTer9	p.R1443Qfs*9	ENST00000330684	NM_001134407.1	1442	-/C																																												NEWRECORD																																		
RPS6KB2	0	MSKCC	GRCh37	11	67198887	67198887	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113335412		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	106	324	3	ENST00000312629.5:c.358C>T	p.Arg120Trp	p.R120W	ENST00000312629	NM_003952.2	120	Cgg/Tgg																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	104	278	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	57	331	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	67	362	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	77	197	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56489534	56489534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	78	315	1	ENST00000267101.3:c.1999C>T	p.Arg667Cys	p.R667C	ENST00000267101	NM_001982.3	667	Cgt/Tgt																																												NEWRECORD																																		
PTPRT	11122	MSKCC	GRCh37	20	40739003	40739003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	65	263	0	ENST00000373198.4:c.3281del	p.Pro1094ArgfsTer6	p.P1094Rfs*6	ENST00000373198	NM_133170.3	1094	cCg/cg																																												NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	89	245	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																												NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	129	297	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6036958	6036958	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	53	336	1	ENST00000265849.7:c.802del	p.Tyr268ThrfsTer39	p.Y268Tfs*39	ENST00000265849	NM_000535.5	268	Tac/ac																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140482927	140482927	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	136	397	4	ENST00000288602.6:c.1208del	p.Pro403LeufsTer8	p.P403Lfs*8	ENST00000288602	NM_004333.4	403	cCt/ct																																												NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	131	410	2	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																												NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	80	230	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	35	253	1	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49422892	49422892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	93	277	0	ENST00000301067.7:c.14203C>T	p.Arg4735Trp	p.R4735W	ENST00000301067	NM_003482.3	4735	Cgg/Tgg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89499363	89499363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	70	308	0	ENST00000336596.2:c.2538delC	p.Met847TrpfsTer10	p.M847Wfs*10	ENST00000336596	NM_005233.5	845	Ccc/cc																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45003781	45003784	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	86	286	0	ENST00000558401.1:c.41_44delCTCT	p.Ser14PhefsTer29	p.S14Ffs*29	ENST00000558401	NM_004048.2	13	CTCTct/ct																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31021190	31021190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	104	282	1	ENST00000375687.4:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000375687	NM_015338.5	397	Cgt/Tgt																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78430339	78430339	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	61	377	0	ENST00000370768.2:c.829G>T	p.Gly277Trp	p.G277W	ENST00000370768	NM_003902.3	277	Ggg/Tgg																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198265047	198265047	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	109	329	0	ENST00000335508.6:c.2830T>G	p.Ser944Ala	p.S944A	ENST00000335508	NM_012433.2	944	Tct/Gct																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	70014176	70014176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	119	678	0	ENST00000352241.4:c.1340G>A	p.Gly447Asp	p.G447D	ENST00000352241	NM_198159.2	447	gGc/gAc																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29910638	29910638	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	71	234	0	ENST00000376809.5:c.178T>G	p.Phe60Val	p.F60V	ENST00000376809	NM_002116.7	60	Ttc/Gtc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30680692	30680692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	56	376	0	ENST00000376406.3:c.1027G>A	p.Val343Ile	p.V343I	ENST00000376406	NM_014641.2	343	Gtt/Att																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117715413	117715413	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	87	339	0	ENST00000368508.3:c.1076T>C	p.Leu359Pro	p.L359P	ENST00000368508	NM_002944.2	359	cTg/cCg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157525080	157525080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	39	342	0	ENST00000346085.5:c.4975A>G	p.Asn1659Asp	p.N1659D	ENST00000346085	NM_020732.3	1659	Aat/Gat																																												NEWRECORD																																		
CDKN2B	0	MSKCC	GRCh37	9	22006054	22006054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	159	199	3	ENST00000276925.6:c.349G>A	p.Val117Met	p.V117M	ENST00000276925	NM_004936.3	117	Gtg/Atg																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80336294	80336294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	125	255	0	ENST00000286548.4:c.1025C>T	p.Ala342Val	p.A342V	ENST00000286548	NM_002072.3	342	gCt/gTt																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133760147	133760147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	61	304	0	ENST00000318560.5:c.2470G>A	p.Val824Met	p.V824M	ENST00000318560	NM_005157.4	824	Gtg/Atg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139401405	139401405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112900950		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	47	119	0	ENST00000277541.6:c.3664G>A	p.Val1222Met	p.V1222M	ENST00000277541	NM_017617.3	1222	Gtg/Atg																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43612156	43612156	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181856591		P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	82	267	0	ENST00000355710.3:c.2261C>T	p.Thr754Met	p.T754M	ENST00000355710	NM_020975.4	754	aCg/aTg																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63661937	63661937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	66	221	0	ENST00000279873.7:c.41G>A	p.Gly14Asp	p.G14D	ENST00000279873	NM_032199.2	14	gGc/gAc																																												NEWRECORD																																		
FGF4	0	MSKCC	GRCh37	11	69589698	69589698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	27	55	0	ENST00000168712.1:c.155C>T	p.Ala52Val	p.A52V	ENST00000168712	NM_002007.2	52	gCg/gTg																																												NEWRECORD																																		
TIMM8B	0	MSKCC	GRCh37	11	111956081	111956081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	31	150	0	ENST00000541231.1:c.235A>G	p.Ile79Val	p.I79V	ENST00000541231		79	Att/Gtt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118375344	118375344	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	62	255	0	ENST00000534358.1:c.8737A>G	p.Ser2913Gly	p.S2913G	ENST00000534358	NM_005933.3	2913	Agt/Ggt																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133244133	133244133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	130	299	0	ENST00000320574.5:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000320574	NM_006231.2	759	Cgt/Tgt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32906442	32906442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	79	458	0	ENST00000380152.3:c.827T>C	p.Val276Ala	p.V276A	ENST00000380152		276	gTa/gCa																																												NEWRECORD																																		
RAD51	0	MSKCC	GRCh37	15	40993303	40993303	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	32	376	0	ENST00000267868.3:c.129A>C	p.Glu43Asp	p.E43D	ENST00000267868	NM_002875.4	43	gaA/gaC																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99456355	99456355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	106	289	0	ENST00000268035.6:c.1672C>T	p.Pro558Ser	p.P558S	ENST00000268035	NM_000875.3	558	Ccc/Tcc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5208017	5208017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	154	360	1	ENST00000357368.4:c.5694G>T	p.Glu1898Asp	p.E1898D	ENST00000357368	NM_002850.3	1898	gaG/gaT																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5221018	5221018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	72	198	0	ENST00000357368.4:c.3448C>T	p.Pro1150Ser	p.P1150S	ENST00000357368	NM_002850.3	1150	Cct/Tct																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15272027	15272027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	55	121	0	ENST00000263388.2:c.6412G>A	p.Ala2138Thr	p.A2138T	ENST00000263388	NM_000435.2	2138	Gca/Aca																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15308309	15308309	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	115	340	0	ENST00000263388.2:c.197+2T>C		p.X66_splice	ENST00000263388	NM_000435.2	66																																													NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15355326	15355326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	13	39	0	ENST00000263377.2:c.2297C>T	p.Pro766Leu	p.P766L	ENST00000263377	NM_058243.2	766	cCg/cTg																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66931405	66931405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	116	521	0	ENST00000374690.3:c.2047C>T	p.Pro683Ser	p.P683S	ENST00000374690	NM_000044.3	683	Cca/Tca																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78727867	78727867	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	42	360	0	ENST00000306801.3:c.716del	p.Asn239ThrfsTer16	p.N239Tfs*16	ENST00000306801	NM_020761.2	238	Aaa/aa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106733	27106734	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	63	316	0	ENST00000324856.7:c.6347_6348del	p.Arg2116ThrfsTer33	p.R2116Tfs*33	ENST00000324856	NM_006015.4	2115	cAG/c																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25368433	25368434	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	105	412	1	ENST00000256078.4:c.511dup	p.Ile171AsnfsTer14	p.I171Nfs*14	ENST00000256078	NM_033360.2	171	atc/aAtc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023861	27023861	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	43	101	0	ENST00000324856.7:c.971del	p.Gly324AlafsTer39	p.G324Afs*39	ENST00000324856	NM_006015.4	323	Ggg/gg																																												NEWRECORD																																		
CASP8	841	MSKCC	GRCh37	2	202151290	202151290	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	265	484	0	ENST00000358485.4:c.1596del	p.Lys532AsnfsTer73	p.K532Nfs*73	ENST00000358485	NM_001080125.1	530	agA/ag																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25967116	25967116	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	59	206	0	ENST00000435504.4:c.2090del	p.Gly697ValfsTer102	p.G697Vfs*102	ENST00000435504		697	gGt/gt																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988309	36988309	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	34	111	0	ENST00000354822.5:c.344delG	p.Gly115AlafsTer10	p.G115Afs*10	ENST00000354822	NM_001079668.2	115	gGc/gc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174910	112174910	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	52	322	0	ENST00000257430.4:c.3622del	p.Thr1208ProfsTer57	p.T1208Pfs*57	ENST00000257430	NM_000038.5	1207	Aaa/aa																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185165720	185165720	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	41	240	0	ENST00000265026.3:c.999delA	p.Val334LeufsTer14	p.V334Lfs*14	ENST00000265026	NM_004721.4	332	gAa/ga																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	120	276	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200018596		P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	174	544	0	ENST00000263967.3:c.344G>T	p.Arg115Leu	p.R115L	ENST00000263967	NM_006218.2	115	cGa/cTa																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	299	339	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98218673	98218673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	123	218	2	ENST00000331920.6:c.3191C>T	p.Thr1064Met	p.T1064M	ENST00000331920	NM_000264.3	1064	aCg/aTg																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178096570	178096570	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	167	305	0	ENST00000397062.3:c.761T>A	p.Phe254Tyr	p.F254Y	ENST00000397062	NM_006164.4	254	tTc/tAc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212587204	212587204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	238	460	0	ENST00000342788.4:c.797T>C	p.Phe266Ser	p.F266S	ENST00000342788	NM_005235.2	266	tTt/tCt																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89391033	89391033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	173	438	0	ENST00000336596.2:c.1099G>A	p.Gly367Arg	p.G367R	ENST00000336596	NM_005233.5	367	Ggg/Agg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245316	46245316	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	92	416	0	ENST00000334344.6:c.3410C>A	p.Ser1137Ter	p.S1137*	ENST00000334344	NM_152641.2	1137	tCa/tAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175440	112175441	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTAGCAGATGTA			P-0011109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	183	292	0	ENST00000257430.4:c.4150_4162dup	p.Thr1388IlefsTer2	p.T1388Ifs*2	ENST00000257430	NM_000038.5	1383	-/TTTAGCAGATGTA																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	182	352	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	91	333	0	ENST00000342988.3:c.1610A>T	p.Asp537Val	p.D537V	ENST00000342988	NM_005359.5	537	gAc/gTc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	52	286	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9916220	9916220	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	81	388	1	ENST00000330684.3:c.2069C>T	p.Thr690Met	p.T690M	ENST00000330684	NM_001134407.1	690	aCg/aTg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412095	63412095	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	513	452	3	ENST00000330258.3:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000330258	NM_152424.3	358	Cga/Tga																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151884485	151884485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	227	411	1	ENST00000262189.6:c.4870G>A	p.Gly1624Arg	p.G1624R	ENST00000262189	NM_170606.2	1624	Gga/Aga																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	495073	495073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	136	466	0	ENST00000399788.2:c.233A>G	p.Asn78Ser	p.N78S	ENST00000399788	NM_001042603.1	78	aAt/aGt																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45374992	45374992	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	93	359	0	ENST00000262160.6:c.851A>G	p.Gln284Arg	p.Q284R	ENST00000262160	NM_005901.5	284	cAg/cGg																																												NEWRECORD																																		
CRLF2	0	MSKCC	GRCh37	X	1327707	1327707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	317	406	0	ENST00000381566.1:c.174C>A	p.Phe58Leu	p.F58L	ENST00000381566		58	ttC/ttA																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112102972	112102973	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	111	414	0	ENST00000257430.4:c.308dup	p.Ser104IlefsTer35	p.S104Ifs*35	ENST00000257430	NM_000038.5	103	gta/gTta																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	71	182	0	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																												NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41566525	41566525	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	167	246	0	ENST00000263253.7:c.4408del	p.Met1470CysfsTer26	p.M1470Cfs*26	ENST00000263253	NM_001429.3	1468	Aaa/aa																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	230	240	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	70	147	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg																																												NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	115	272	1	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88423632	88423632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	95	193	0	ENST00000360948.2:c.2203C>T	p.Arg735Cys	p.R735C	ENST00000360948	NM_001012338.2	735	Cgc/Tgc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11145644	11145644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	36	150	1	ENST00000344626.4:c.4006C>T	p.Arg1336Cys	p.R1336C	ENST00000344626	NM_003072.3	1336	Cgc/Tgc																																												NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	95	192	0	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																												NEWRECORD																																		
MEF2B	100271849	MSKCC	GRCh37	19	19257144	19257144	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	52	102	1	ENST00000162023.5:c.819del	p.Thr274ProfsTer?	p.T274Pfs*?	ENST00000162023		273	ccC/cc																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41275249	41275249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	59	149	0	ENST00000349496.5:c.1415C>G	p.Thr472Ser	p.T472S	ENST00000349496	NM_001904.3	472	aCc/aGc																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138375045	138375045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	113	192	0	ENST00000289153.2:c.3014C>T	p.Ala1005Val	p.A1005V	ENST00000289153	NM_006219.2	1005	gCg/gTg																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86668007	86668007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	96	215	0	ENST00000274376.6:c.1771C>T	p.Arg591Cys	p.R591C	ENST00000274376	NM_002890.2	591	Cgt/Tgt																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5072537	5072537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	71	154	0	ENST00000381652.3:c.1687G>A	p.Val563Ile	p.V563I	ENST00000381652	NM_004972.3	563	Gta/Ata																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412642	139412642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	111	179	0	ENST00000277541.6:c.1202C>A	p.Pro401His	p.P401H	ENST00000277541	NM_017617.3	401	cCc/cAc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717727	89717727	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	160	150	0	ENST00000371953.3:c.752G>T	p.Gly251Val	p.G251V	ENST00000371953	NM_000314.4	251	gGt/gTt																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115117336	115117336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	144	350	0	ENST00000257566.3:c.838G>A	p.Ala280Thr	p.A280T	ENST00000257566	NM_016569.3	280	Gct/Act																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828089	72828089	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	201	407	1	ENST00000268489.5:c.8492A>T	p.Asp2831Val	p.D2831V	ENST00000268489	NM_006885.3	2831	gAc/gTc																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10248548	10248548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	141	210	0	ENST00000340748.4:c.4205G>A	p.Gly1402Asp	p.G1402D	ENST00000340748		1402	gGc/gAc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15288736	15288736	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	12	28	0	ENST00000263388.2:c.4003A>T	p.Ser1335Cys	p.S1335C	ENST00000263388	NM_000435.2	1335	Agc/Tgc																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101117	27101117	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	153	269	2	ENST00000324856.7:c.4403del	p.Pro1468LeufsTer13	p.P1468Lfs*13	ENST00000324856	NM_006015.4	1467	Ccc/cc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49446774	49446775	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	97	190	0	ENST00000301067.7:c.1035_1036delCT	p.Cys346SerfsTer17	p.C346Sfs*17	ENST00000301067	NM_003482.3	345	ctCTgt/ctgt																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591135	67591136	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	106	159	0	ENST00000274335.5:c.1732_1733del	p.Asp578ProfsTer23	p.D578Pfs*23	ENST00000274335		576	acGAga/acga																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993013	72993014	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	238	420	0	ENST00000268489.5:c.1031dup	p.Asn344LysfsTer13	p.N344Kfs*13	ENST00000268489	NM_006885.3	344	aac/aaAc																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073850	8073851	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTATACAA			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	176	415	0	ENST00000377482.5:c.801_808dup	p.His270LeufsTer28	p.H270Lfs*28	ENST00000377482	NM_018948.3	270	cac/cTTGTATACac																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38512377	38512377	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	54	183	0	ENST00000254066.5:c.1293delG	p.Arg432GlyfsTer211	p.R432Gfs*211	ENST00000254066	NM_000964.3	430	Ggg/gg																																												NEWRECORD																																		
CCND1	0	MSKCC	GRCh37	11	69466030	69466031	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCGCCA			P-0008444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	89	227	0	ENST00000227507.2:c.868_869insCCCGCCA	p.Val290AlafsTer66	p.V290Afs*66	ENST00000227507	NM_053056.2	290	gtg/gCCCGCCAtg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16259786	16259786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	267	298	0	ENST00000375759.3:c.7051C>T	p.Pro2351Ser	p.P2351S	ENST00000375759	NM_015001.2	2351	Cct/Tct																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156845416	156845416	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1068	286	465	1	ENST00000524377.1:c.1459C>T	p.Gln487Ter	p.Q487*	ENST00000524377	NM_002529.3	487	Caa/Taa																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16085921	16085921	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	79	198	0	ENST00000281043.3:c.1097A>C	p.Lys366Thr	p.K366T	ENST00000281043	NM_005378.4	366	aAg/aCg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29917784	29917784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	144	330	1	ENST00000389048.3:c.884C>T	p.Ser295Phe	p.S295F	ENST00000389048	NM_004304.4	295	tCc/tTc																																												NEWRECORD																																		
EPCAM	0	MSKCC	GRCh37	2	47606929	47606929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	144	262	0	ENST00000263735.4:c.679C>T	p.His227Tyr	p.H227Y	ENST00000263735	NM_002354.2	227	Cat/Tat																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61145543	61145543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	102	287	1	ENST00000295025.8:c.655C>T	p.Arg219Cys	p.R219C	ENST00000295025	NM_002908.2	219	Cgt/Tgt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248453	212248453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	106	314	1	ENST00000342788.4:c.3814G>A	p.Gly1272Arg	p.G1272R	ENST00000342788	NM_005235.2	1272	Ggg/Agg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248741	212248741	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	86	225	0	ENST00000342788.4:c.3526A>T	p.Lys1176Ter	p.K1176*	ENST00000342788	NM_005235.2	1176	Aaa/Taa																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215632279	215632279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	162	437	0	ENST00000260947.4:c.1495C>T	p.His499Tyr	p.H499Y	ENST00000260947	NM_000465.2	499	Cac/Tac																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	70008543	70008544	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	65	202	1	ENST00000352241.4:c.1133_1134delinsTT	p.Ala378Val	p.A378V	ENST00000352241	NM_198159.2	378	gCC/gTT																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71021800	71021800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	82	321	1	ENST00000318789.4:c.1558C>T	p.His520Tyr	p.H520Y	ENST00000318789	NM_032682.5	520	Cac/Tac																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128200682	128200682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	217	366	0	ENST00000341105.2:c.1123C>T	p.Leu375Phe	p.L375F	ENST00000341105	NM_032638.4	375	Ctc/Ttc																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138409912	138409912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	235	353	0	ENST00000289153.2:c.1966C>T	p.Leu656Phe	p.L656F	ENST00000289153	NM_006219.2	656	Ctc/Ttc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189349321	189349321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	213	343	0	ENST00000264731.3:c.17C>T	p.Ser6Leu	p.S6L	ENST00000264731	NM_003722.4	6	tCa/tTa																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	235	314	0	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt																																												NEWRECORD																																		
PHOX2B	0	MSKCC	GRCh37	4	41748257	41748257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	141	410	0	ENST00000226382.2:c.512C>T	p.Ser171Phe	p.S171F	ENST00000226382	NM_003924.3	171	tCc/tTc																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66217165	66217165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	167	415	1	ENST00000273854.3:c.2450C>T	p.Ser817Phe	p.S817F	ENST00000273854	NM_004439.5	817	tCt/tTt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187541697	187541697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	115	392	0	ENST00000441802.2:c.6043C>T	p.His2015Tyr	p.H2015Y	ENST00000441802	NM_005245.3	2015	Cac/Tac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542722	187542722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	123	391	0	ENST00000441802.2:c.5018C>T	p.Ser1673Phe	p.S1673F	ENST00000441802	NM_005245.3	1673	tCt/tTt																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	226100	226100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	76	211	1	ENST00000264932.6:c.559C>T	p.His187Tyr	p.H187Y	ENST00000264932	NM_004168.2	187	Cat/Tat																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35861010	35861010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	126	290	0	ENST00000303115.3:c.139G>A	p.Glu47Lys	p.E47K	ENST00000303115	NM_002185.3	47	Gaa/Aaa																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35873708	35873708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	105	323	0	ENST00000303115.3:c.664C>T	p.Pro222Ser	p.P222S	ENST00000303115	NM_002185.3	222	Cca/Tca																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149502728	149502728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	141	323	0	ENST00000261799.4:c.2060G>A	p.Gly687Glu	p.G687E	ENST00000261799	NM_002609.3	687	gGa/gAa																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180056405	180056405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	82	218	1	ENST00000261937.6:c.839C>T	p.Pro280Leu	p.P280L	ENST00000261937	NM_182925.4	280	cCc/cTc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30673379	30673379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	125	477	0	ENST00000376406.3:c.3581C>T	p.Ser1194Phe	p.S1194F	ENST00000376406	NM_014641.2	1194	tCc/tTc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30679876	30679876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	81	274	0	ENST00000376406.3:c.1843C>T	p.Leu615Phe	p.L615F	ENST00000376406	NM_014641.2	615	Ctt/Ttt																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30680931	30680931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1407	137	515	2	ENST00000376406.3:c.788C>T	p.Pro263Leu	p.P263L	ENST00000376406	NM_014641.2	263	cCt/cTt																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32178632	32178632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	216	423	0	ENST00000375023.3:c.2762G>A	p.Gly921Glu	p.G921E	ENST00000375023	NM_004557.3	921	gGa/gAa																																												NEWRECORD																																		
EPHA7	2045	MSKCC	GRCh37	6	94068025	94068025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	206	516	1	ENST00000369303.4:c.937G>A	p.Glu313Lys	p.E313K	ENST00000369303	NM_004440.3	313	Gaa/Aaa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117609831	117609831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	148	447	1	ENST00000368508.3:c.6868G>A	p.Gly2290Ser	p.G2290S	ENST00000368508	NM_002944.2	2290	Ggt/Agt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117609846	117609846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	175	465	1	ENST00000368508.3:c.6853G>A	p.Glu2285Lys	p.E2285K	ENST00000368508	NM_002944.2	2285	Gaa/Aaa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117709099	117709099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	145	376	0	ENST00000368508.3:c.1858C>T	p.Pro620Ser	p.P620S	ENST00000368508	NM_002944.2	620	Cct/Tct																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117710962	117710962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	75	222	0	ENST00000368508.3:c.1310C>T	p.Pro437Leu	p.P437L	ENST00000368508	NM_002944.2	437	cCt/cTt																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137519496	137519496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	90	258	0	ENST00000367739.4:c.1142C>T	p.Pro381Leu	p.P381L	ENST00000367739	NM_000416.2	381	cCt/cTt																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138202352	138202352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	89	225	0	ENST00000237289.4:c.2269C>T	p.Pro757Ser	p.P757S	ENST00000237289	NM_001270507.1	757	Ccc/Tcc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157510880	157510880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	122	335	0	ENST00000346085.5:c.3655C>T	p.Pro1219Ser	p.P1219S	ENST00000346085	NM_020732.3	1219	Cct/Tct																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2959226	2959226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	168	306	0	ENST00000396946.4:c.2290G>A	p.Asp764Asn	p.D764N	ENST00000396946	NM_032415.4	764	Gac/Aac																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6026826	6026826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	109	141	0	ENST00000265849.7:c.1570C>T	p.Pro524Ser	p.P524S	ENST00000265849	NM_000535.5	524	Cca/Tca																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81381466	81381466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	108	464	1	ENST00000222390.5:c.595G>A	p.Glu199Lys	p.E199K	ENST00000222390	NM_000601.4	199	Gaa/Aaa																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116436143	116436143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	109	255	0	ENST00000397752.3:c.4138G>A	p.Asp1380Asn	p.D1380N	ENST00000397752	NM_000245.2	1380	Gac/Aac																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151875006	151875006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	192	325	0	ENST00000262189.6:c.7532C>T	p.Ser2511Phe	p.S2511F	ENST00000262189	NM_170606.2	2511	tCt/tTt																																												NEWRECORD																																		
NKX3-1	0	MSKCC	GRCh37	8	23538897	23538897	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150251660		P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	127	403	0	ENST00000380871.4:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000380871	NM_006167.3	181	cGa/cAa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8524937	8524937	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	218	262	0	ENST00000356435.5:c.667T>A	p.Leu223Ile	p.L223I	ENST00000356435		223	Tta/Ata																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8636799	8636799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	350	375	0	ENST00000356435.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000356435		37	tCt/tTt																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87356825	87356825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	309	394	1	ENST00000277120.3:c.1178C>T	p.Pro393Leu	p.P393L	ENST00000277120		393	cCt/cTt																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93606422	93606423	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	91	325	0	ENST00000375746.1:c.242_243delinsAT	p.Thr81Asn	p.T81N	ENST00000375746	NM_001174167.1	81	aCC/aAT																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98212157	98212157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	150	365	0	ENST00000331920.6:c.3515C>T	p.Pro1172Leu	p.P1172L	ENST00000331920	NM_000264.3	1172	cCc/cTc																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135804163	135804163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	197	261	1	ENST00000298552.3:c.97C>T	p.Leu33Phe	p.L33F	ENST00000298552	NM_001162426.1	33	Ctc/Ttc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63845643	63845643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	64	130	0	ENST00000279873.7:c.1382C>T	p.Pro461Leu	p.P461L	ENST00000279873	NM_032199.2	461	cCc/cTc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332943	70332943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	181	515	0	ENST00000373644.4:c.848C>T	p.Ser283Phe	p.S283F	ENST00000373644	NM_030625.2	283	tCt/tTt																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123274696	123274696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	164	348	0	ENST00000358487.5:c.1222G>A	p.Asp408Asn	p.D408N	ENST00000358487	NM_000141.4	408	Gac/Aac																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64138158	64138158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	123	261	0	ENST00000334205.4:c.2081C>T	p.Ser694Phe	p.S694F	ENST00000334205	NM_003942.2	694	tCt/tTt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118342779	118342780	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	152	344	0	ENST00000534358.1:c.905_906delinsAA	p.Arg302Gln	p.R302Q	ENST00000534358	NM_005933.3	302	cGG/cAA																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18443814	18443814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	88	283	0	ENST00000266497.5:c.787G>A	p.Asp263Asn	p.D263N	ENST00000266497		263	Gat/Aat																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18691101	18691101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	280	274	0	ENST00000266497.5:c.3212C>T	p.Pro1071Leu	p.P1071L	ENST00000266497		1071	cCt/cTt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49445376	49445376	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	67	240	0	ENST00000301067.7:c.2090C>T	p.Pro697Leu	p.P697L	ENST00000301067	NM_003482.3	697	cCc/cTc																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121434077	121434077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	341	416	0	ENST00000257555.6:c.968G>A	p.Gly323Glu	p.G323E	ENST00000257555		323	gGa/gAa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28959133	28959133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	126	309	0	ENST00000282397.4:c.2005G>A	p.Asp669Asn	p.D669N	ENST00000282397	NM_002019.4	669	Gat/Aat																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29012441	29012441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55974987		P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	91	364	0	ENST00000282397.4:c.430G>A	p.Glu144Lys	p.E144K	ENST00000282397	NM_002019.4	144	Gaa/Aaa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29041073	29041073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	116	293	0	ENST00000282397.4:c.355G>A	p.Glu119Lys	p.E119K	ENST00000282397	NM_002019.4	119	Gaa/Aaa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32906999	32906999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	107	214	0	ENST00000380152.3:c.1384G>A	p.Glu462Lys	p.E462K	ENST00000380152		462	Gaa/Aaa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32907092	32907092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	143	242	0	ENST00000380152.3:c.1477C>T	p.Pro493Ser	p.P493S	ENST00000380152		493	Cca/Tca																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988342	36988342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	50	104	0	ENST00000354822.5:c.311G>A	p.Gly104Glu	p.G104E	ENST00000354822	NM_001079668.2	104	gGg/gAg																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81610464	81610464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	176	390	0	ENST00000298171.2:c.2062G>A	p.Asp688Asn	p.D688N	ENST00000298171	NM_000369.2	688	Gat/Aat																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41989031	41989031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1431	253	572	1	ENST00000219905.7:c.1823C>T	p.Pro608Leu	p.P608L	ENST00000219905	NM_001164273.1	608	cCa/cTa																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99456431	99456431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	138	292	0	ENST00000268035.6:c.1748C>T	p.Ala583Val	p.A583V	ENST00000268035	NM_000875.3	583	gCt/gTt																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99459199	99459199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	182	498	0	ENST00000268035.6:c.1835C>T	p.Ser612Phe	p.S612F	ENST00000268035	NM_000875.3	612	tCc/tTc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3828772	3828772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	190	462	0	ENST00000262367.5:c.1870C>T	p.Arg624Cys	p.R624C	ENST00000262367	NM_004380.2	624	Cgc/Tgc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857334	9857334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	106	302	0	ENST00000330684.3:c.4067C>T	p.Ser1356Phe	p.S1356F	ENST00000330684	NM_001134407.1	1356	tCt/tTt																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857391	9857391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	95	361	0	ENST00000330684.3:c.4010C>T	p.Ser1337Leu	p.S1337L	ENST00000330684	NM_001134407.1	1337	tCg/tTg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858357	9858359	+	stop_gained	Nonsense_Mutation	ONP	TTC	TTC	ATT			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	48	271	0	ENST00000330684.3:c.3042_3044delinsAAT	p.Trp1014_Lys1015delinsTer	p.W1014_K1015delins*	ENST00000330684	NM_001134407.1	1014	tgGAAg/tgAATg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9892177	9892177	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	170	466	0	ENST00000330684.3:c.2313G>A	p.Trp771Ter	p.W771*	ENST00000330684	NM_001134407.1	771	tgG/tgA																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9923482	9923482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	81	320	1	ENST00000330684.3:c.1805G>A	p.Gly602Glu	p.G602E	ENST00000330684	NM_001134407.1	602	gGa/gAa																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10274121	10274121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	74	269	0	ENST00000330684.3:c.148G>A	p.Glu50Lys	p.E50K	ENST00000330684	NM_001134407.1	50	Gaa/Aaa																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7979527	7979527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	275	390	0	ENST00000319144.4:c.1498G>A	p.Asp500Asn	p.D500N	ENST00000319144	NM_001139.2	500	Gat/Aat																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	245	343	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29585494	29585494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	114	158	1	ENST00000358273.4:c.4306G>A	p.Glu1436Lys	p.E1436K	ENST00000358273	NM_001042492.2	1436	Gaa/Aaa																																												NEWRECORD																																		
MAP2K2	0	MSKCC	GRCh37	19	4102403	4102403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	180	380	1	ENST00000262948.5:c.499G>A	p.Glu167Lys	p.E167K	ENST00000262948	NM_030662.3	167	Gag/Aag																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5210733	5210733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	162	355	0	ENST00000357368.4:c.5318C>T	p.Ser1773Leu	p.S1773L	ENST00000357368	NM_002850.3	1773	tCg/tTg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7174602	7174602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	123	322	0	ENST00000302850.5:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000302850	NM_000208.2	372	cGa/cAa																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15290271	15290271	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140147764		P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	174	474	2	ENST00000263388.2:c.3364G>A	p.Asp1122Asn	p.D1122N	ENST00000263388	NM_000435.2	1122	Gac/Aac																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17946809	17946809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	141	383	0	ENST00000458235.1:c.1838G>A	p.Arg613Gln	p.R613Q	ENST00000458235	NM_000215.3	613	cGa/cAa																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17948869	17948869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	135	334	0	ENST00000458235.1:c.1573G>A	p.Glu525Lys	p.E525K	ENST00000458235	NM_000215.3	525	Gag/Aag																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42790926	42790926	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	155	426	0	ENST00000575354.2:c.71G>A	p.Trp24Ter	p.W24*	ENST00000575354	NM_015125.3	24	tGg/tAg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42794463	42794463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	240	531	0	ENST00000575354.2:c.1543C>T	p.Pro515Ser	p.P515S	ENST00000575354	NM_015125.3	515	Cca/Tca																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9561555	9561555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	142	213	0	ENST00000353224.5:c.227C>G	p.Pro76Arg	p.P76R	ENST00000353224	NM_177990.2	76	cCc/cGc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41408864	41408864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	296	396	0	ENST00000373198.4:c.562C>T	p.Pro188Ser	p.P188S	ENST00000373198	NM_133170.3	188	Cca/Tca																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42840334	42840334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	142	380	1	ENST00000398585.3:c.1414G>A	p.Asp472Asn	p.D472N	ENST00000398585	NM_001135099.1	472	Gat/Aat																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42852518	42852518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	172	455	0	ENST00000398585.3:c.568G>A	p.Gly190Arg	p.G190R	ENST00000398585	NM_001135099.1	190	Gga/Aga																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41545901	41545901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1674	457	554	0	ENST00000263253.7:c.2516C>T	p.Thr839Ile	p.T839I	ENST00000263253	NM_001429.3	839	aCc/aTc																																												NEWRECORD																																		
CRLF2	0	MSKCC	GRCh37	X	1331479	1331479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	283	308	0	ENST00000381566.1:c.49G>A	p.Gly17Ser	p.G17S	ENST00000381566		17	Ggc/Agc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70349979	70349979	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	293	206	0	ENST00000374080.3:c.3962T>C	p.Met1321Thr	p.M1321T	ENST00000374080		1321	aTg/aCg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76931728	76931728	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	278	234	0	ENST00000373344.5:c.3802G>T	p.Glu1268Ter	p.E1268*	ENST00000373344	NM_000489.3	1268	Gag/Tag																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857386	9857387	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	84	360	0	ENST00000330684.3:c.4014dup	p.Lys1339GlufsTer27	p.K1339Efs*27	ENST00000330684	NM_001134407.1	1338	-/G																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579408	7579430	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGGCCAGGAGGGGGCTGGTG	CAGGGGCCAGGAGGGGGCTGGTG	-			P-0010726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	224	325	0	ENST00000269305.4:c.257_279delCACCAGCCCCCTCCTGGCCCCTG	p.Ala86ValfsTer55	p.A86Vfs*55	ENST00000269305	NM_001126112.2	86	gCACCAGCCCCCTCCTGGCCCCTG/g																																												NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0010925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	207	852	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27089539	27089540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	137	614	0	ENST00000324856.7:c.2498dup	p.Asn833LysfsTer39	p.N833Kfs*39	ENST00000324856	NM_006015.4	832	ata/atAa																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0011270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	217	280	2	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	209	452	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCT			P-0008472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	717	480	0	ENST00000269571.5:c.2314_2325dupTACGTGATGGCT	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCT																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	163	336	0	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991559	72991559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	305	706	0	ENST00000268489.5:c.2486T>C	p.Met829Thr	p.M829T	ENST00000268489	NM_006885.3	829	aTg/aCg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81957199	81957199	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008472-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	255	410	0	ENST00000359376.3:c.2417G>T	p.Trp806Leu	p.W806L	ENST00000359376	NM_002661.3	806	tGg/tTg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			76	310	286	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46543187	46543187	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	574	328	0	ENST00000262741.5:c.314G>T	p.Arg105Leu	p.R105L	ENST00000262741	NM_003629.3	105	cGg/cTg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29519787	29519787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	188	273	0	ENST00000389048.3:c.1784G>A	p.Trp595Ter	p.W595*	ENST00000389048	NM_004304.4	595	tGg/tAg																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204732712	204732712	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	332	360	0	ENST00000302823.3:c.47C>A	p.Ala16Asp	p.A16D	ENST00000302823	NM_005214.4	16	gCt/gAt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212812204	212812204	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	386	318	0	ENST00000342788.4:c.372A>T	p.Arg124Ser	p.R124S	ENST00000342788	NM_005235.2	124	agA/agT																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117632220	117632220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	298	308	0	ENST00000368508.3:c.6196G>T	p.Gly2066Cys	p.G2066C	ENST00000368508	NM_002944.2	2066	Ggc/Tgc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63810661	63810661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	214	253	1	ENST00000279873.7:c.748G>T	p.Gly250Cys	p.G250C	ENST00000279873	NM_032199.2	250	Ggc/Tgc																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4409042	4409042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	168	265	1	ENST00000261254.3:c.737G>A	p.Cys246Tyr	p.C246Y	ENST00000261254	NM_001759.3	246	tGc/tAc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49435026	49435026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			113	182	160	0	ENST00000301067.7:c.6527C>T	p.Pro2176Leu	p.P2176L	ENST00000301067	NM_003482.3	2176	cCc/cTc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48916734	48916734	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	228	229	0	ENST00000267163.4:c.265-1G>T		p.X89_splice	ENST00000267163	NM_000321.2	89																																													NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103514853	103514853	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	196	213	0	ENST00000355739.4:c.1354A>T	p.Asn452Tyr	p.N452Y	ENST00000355739	NM_000123.3	452	Aac/Tac																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434924	49434924	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	193	178	0	ENST00000301067.7:c.6629del	p.Pro2210ArgfsTer54	p.P2210Rfs*54	ENST00000301067	NM_003482.3	2210	cCg/cg																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42839685	42839686	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	166	272	0	ENST00000398585.3:c.1553dup	p.Asp519GlyfsTer40	p.D519Gfs*40	ENST00000398585	NM_001135099.1	518	acg/acCg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66201670	66201671	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0001937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	303	304	0	ENST00000273854.3:c.2831_2832delinsTT	p.Thr944Ile	p.T944I	ENST00000273854	NM_004439.5	944	aCG/aTT																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007424-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			734	59	316	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36987105	36987106	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007424-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			292	21	232	0	ENST00000354822.5:c.583dup	p.Arg195ProfsTer244	p.R195Pfs*244	ENST00000354822	NM_001079668.2	195	cgg/cCgg																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120612014	120612014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	10	39	1	ENST00000256646.2:c.7G>T	p.Ala3Ser	p.A3S	ENST00000256646	NM_024408.3	3	Gcc/Tcc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29606696	29606696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	105	360	0	ENST00000389048.3:c.1184G>A	p.Arg395His	p.R395H	ENST00000389048	NM_004304.4	395	cGt/cAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	215	434	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	241	530	1	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1801148	1801148	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199968400		P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	10	309	0	ENST00000260795.2:c.277C>T	p.Arg93Trp	p.R93W	ENST00000260795		93	Cgg/Tgg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593394	48593394	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	74	294	0	ENST00000342988.3:c.1145A>G	p.His382Arg	p.H382R	ENST00000342988	NM_005359.5	382	cAc/cGc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41385182	41385182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	59	420	0	ENST00000373198.4:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000373198	NM_133170.3	260	cGg/cAg																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28644740	28644741	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	54	332	1	ENST00000241453.7:c.52dup	p.Ser18PhefsTer24	p.S18Ffs*24	ENST00000241453	NM_004119.2	18	tct/tTct																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	31	180	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	97	533	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16004856	16004856	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	102	393	2	ENST00000268712.3:c.2398C>T	p.Gln800Ter	p.Q800*	ENST00000268712	NM_006311.3	800	Cag/Tag																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78428510	78428510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	112	402	0	ENST00000370768.2:c.1289G>A	p.Arg430His	p.R430H	ENST00000370768	NM_003902.3	430	cGt/cAt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178938932	178938932	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	36	121	0	ENST00000263967.3:c.2174A>G	p.Asp725Gly	p.D725G	ENST00000263967	NM_006218.2	725	gAt/gGt																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67063716	67063717	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GT			P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	41	215	0	ENST00000412916.2:c.165+1_165+2dup		p.-55fs	ENST00000412916		55	-/GT																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12032529	12032536	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGAGAT	AAGGAGAT	-			P-0004194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	73	284	0	ENST00000353533.5:c.965_972del	p.Lys322ThrfsTer6	p.K322Tfs*6	ENST00000353533	NM_003010.3	322	aAAGGAGAT/a																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149441304	149441304	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	140	495	0	ENST00000286301.3:c.1735C>T	p.Arg579Trp	p.R579W	ENST00000286301	NM_005211.3	579	Cgg/Tgg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579580	7579580	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	507	450	0	ENST00000269305.4:c.107delC	p.Pro36ArgfsTer8	p.P36Rfs*8	ENST00000269305	NM_001126112.2	36	cCg/cg																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67589586	67589591	+	inframe_deletion	In_Frame_Del	DEL	ATGAAT	ATGAAT	-			P-0011284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	74	295	0	ENST00000274335.5:c.1351_1356del	p.Glu451_Tyr452del	p.E451_Y452del	ENST00000274335		450	cATGAATat/cat																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59761459	59761460	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	341	406	0	ENST00000259008.2:c.2947dup	p.Ile983AsnfsTer19	p.I983Nfs*19	ENST00000259008	NM_032043.2	983	att/aAtt																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48026204	48026204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	292	525	1	ENST00000234420.5:c.1082G>A	p.Arg361His	p.R361H	ENST00000234420	NM_000179.2	361	cGc/cAc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180030221	180030221	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143739828		P-0011284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	171	541	1	ENST00000261937.6:c.4063G>A	p.Val1355Met	p.V1355M	ENST00000261937	NM_182925.4	1355	Gtg/Atg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56152479	56152479	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	79	304	0	ENST00000399503.3:c.535delC	p.Arg179ValfsTer6	p.R179Vfs*6	ENST00000399503	NM_005921.1	179	Cgt/gt																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643768	52643768	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	98	494	0	ENST00000394830.3:c.2128C>T	p.Arg710Ter	p.R710*	ENST00000394830	NM_018313.4	710	Cga/Tga																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52613209	52613210	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	33	439	0	ENST00000394830.3:c.3318dup	p.Glu1107ArgfsTer11	p.E1107Rfs*11	ENST00000394830	NM_018313.4	1106	-/A																																												NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187447774	187447774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	115	254	0	ENST00000232014.4:c.419G>A	p.Arg140His	p.R140H	ENST00000232014	NM_001130845.1	140	cGt/cAt																																												NEWRECORD																																		
PRKAR1A	0	MSKCC	GRCh37	17	66526085	66526085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	156	652	1	ENST00000358598.2:c.916C>T	p.Arg306Trp	p.R306W	ENST00000358598	NM_212471.2	306	Cgg/Tgg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187584643	187584643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	180	797	0	ENST00000441802.2:c.3390G>T	p.Glu1130Asp	p.E1130D	ENST00000441802	NM_005245.3	1130	gaG/gaT																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176721973	176721973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	98	292	0	ENST00000439151.2:c.7604A>G	p.Gln2535Arg	p.Q2535R	ENST00000439151	NM_022455.4	2535	cAg/cGg																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43607553	43607553	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201745826		P-0010376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	38	311	2	ENST00000355710.3:c.1529C>T	p.Ala510Val	p.A510V	ENST00000355710	NM_020975.4	510	gCc/gTc																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119144628	119144628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	73	564	0	ENST00000264033.4:c.641C>T	p.Pro214Leu	p.P214L	ENST00000264033	NM_005188.3	214	cCc/cTc																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183755	10183757	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0010376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	113	360	0	ENST00000256474.2:c.227_229delTCT	p.Phe76del	p.F76del	ENST00000256474	NM_000551.3	75	aTCTtc/atc																																												NEWRECORD																																		
MYCL1	0	MSKCC	GRCh37	1	40363137	40363138	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	149	436	0	ENST00000397332.2:c.1091dup	p.Ala366GlyfsTer2	p.A366Gfs*2	ENST00000397332	NM_001033082.2	364	gtg/gtTg																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37053506	37053507	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0010376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	162	558	0	ENST00000231790.2:c.597_598del	p.Glu199AspfsTer4	p.E199Dfs*4	ENST00000231790	NM_000249.3	198	gGA/g																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	95	455	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	19	301	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114920396	114920396	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	113	584	0	ENST00000543371.1:c.1337A>C	p.Lys446Thr	p.K446T	ENST00000543371	NM_001198531.1	446	aAg/aCg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212426657	212426657	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	71	434	0	ENST00000342788.4:c.2458C>A	p.Leu820Met	p.L820M	ENST00000342788	NM_005235.2	820	Ctg/Atg																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71026118	71026118	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	69	412	0	ENST00000318789.4:c.1504T>A	p.Phe502Ile	p.F502I	ENST00000318789	NM_032682.5	502	Ttc/Atc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67576373	67576373	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	36	254	0	ENST00000274335.5:c.652G>T	p.Glu218Ter	p.E218*	ENST00000274335		218	Gaa/Taa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112111340	112111340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	41	262	1	ENST00000257430.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000257430	NM_000038.5	146	gCt/gTt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117680994	117680994	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	42	318	0	ENST00000368508.3:c.3626T>G	p.Leu1209Trp	p.L1209W	ENST00000368508	NM_002944.2	1209	tTg/tGg																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57861143	57861143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	74	553	0	ENST00000228682.2:c.940C>T	p.Arg314Cys	p.R314C	ENST00000228682	NM_005269.2	314	Cgc/Tgc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133209268	133209268	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	99	508	1	ENST00000320574.5:c.6118G>T	p.Ala2040Ser	p.A2040S	ENST00000320574	NM_006231.2	2040	Gcg/Tcg																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457310	67457310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	139	435	0	ENST00000327367.4:c.284C>T	p.Pro95Leu	p.P95L	ENST00000327367	NM_005902.3	95	cCa/cTa																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41551071	41551071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	37	613	0	ENST00000263253.7:c.3215C>T	p.Ser1072Phe	p.S1072F	ENST00000263253	NM_001429.3	1072	tCc/tTc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173607	112173607	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	65	407	0	ENST00000257430.4:c.2319del	p.Phe773LeufsTer4	p.F773Lfs*4	ENST00000257430	NM_000038.5	772	acT/ac																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89725043	89725043	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	31	411	0	ENST00000371953.3:c.1027delG		p.X343_splice	ENST00000371953	NM_000314.4	343																																													NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27089625	27089626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	36	479	0	ENST00000324856.7:c.2583dup	p.Ser862LeufsTer10	p.S862Lfs*10	ENST00000324856	NM_006015.4	861	gcc/gCcc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			418	97	334	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			309	407	409	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123196830	123196830	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			180	259	346	0	ENST00000218089.9:c.1717C>T	p.Gln573Ter	p.Q573*	ENST00000218089	NM_001042749.1	573	Cag/Tag																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16260464	16260464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			315	160	262	0	ENST00000375759.3:c.7729G>A	p.Asp2577Asn	p.D2577N	ENST00000375759	NM_015001.2	2577	Gac/Aac																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106771	27106771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			522	295	444	0	ENST00000324856.7:c.6382C>T	p.Gln2128Ter	p.Q2128*	ENST00000324856	NM_006015.4	2128	Cag/Tag																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43812202	43812202	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			885	365	627	1	ENST00000372470.3:c.1067C>T	p.Ser356Leu	p.S356L	ENST00000372470	NM_005373.2	356	tCa/tTa																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30142927	30142927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			662	268	436	0	ENST00000389048.3:c.599G>A	p.Arg200Lys	p.R200K	ENST00000389048	NM_004304.4	200	aGa/aAa																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12632451	12632451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			731	405	486	1	ENST00000251849.4:c.1216C>A	p.Leu406Met	p.L406M	ENST00000251849	NM_002880.3	406	Ctg/Atg																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436305	52436305	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			557	253	527	0	ENST00000460680.1:c.2189G>C	p.Ter730SerextTer205	p.*730Sext*205	ENST00000460680	NM_004656.3	730	tGa/tCa																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52595810	52595810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			855	168	502	0	ENST00000394830.3:c.4105G>C	p.Glu1369Gln	p.E1369Q	ENST00000394830	NM_018313.4	1369	Gag/Cag																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187524459	187524459	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			490	249	422	0	ENST00000441802.2:c.11221C>G	p.Leu3741Val	p.L3741V	ENST00000441802	NM_005245.3	3741	Ctg/Gtg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32169228	32169228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			747	311	448	1	ENST00000375023.3:c.3805G>A	p.Glu1269Lys	p.E1269K	ENST00000375023	NM_004557.3	1269	Gag/Aag																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152373155	152373155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1428	212	886	1	ENST00000359321.1:c.10G>A	p.Ala4Thr	p.A4T	ENST00000359321	NM_005431.1	4	Gcc/Acc																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38274882	38274882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			894	179	568	0	ENST00000425967.3:c.1698G>T	p.Met566Ile	p.M566I	ENST00000425967	NM_001174067.1	566	atG/atT																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114710681	114710681	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	499	821	0	ENST00000543371.1:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000543371	NM_001198531.1	56	Caa/Taa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108121454	108121454	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			192	84	160	0	ENST00000278616.4:c.1262C>G	p.Ser421Ter	p.S421*	ENST00000278616	NM_000051.3	421	tCa/tGa																																												NEWRECORD																																		
GPS2	0	MSKCC	GRCh37	17	7217308	7217308	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			614	695	770	0	ENST00000380728.2:c.398-1G>C		p.X133_splice	ENST00000380728		133																																													NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58678010	58678010	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			468	313	389	0	ENST00000305921.3:c.235C>G	p.Leu79Val	p.L79V	ENST00000305921	NM_003620.3	79	Ctc/Gtc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591865	48591865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			766	41	626	1	ENST00000342988.3:c.1028C>T	p.Ser343Leu	p.S343L	ENST00000342988	NM_005359.5	343	tCa/tTa																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5222997	5222997	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			471	205	367	0	ENST00000357368.4:c.2806G>C	p.Glu936Gln	p.E936Q	ENST00000357368	NM_002850.3	936	Gag/Cag																																												NEWRECORD																																		
MEF2B	0	MSKCC	GRCh37	19	19257367	19257367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			651	175	490	0	ENST00000162023.5:c.766C>G	p.Pro256Ala	p.P256A	ENST00000162023		256	Cca/Gca																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26911747	26911747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			524	144	534	0	ENST00000381527.3:c.174del	p.Ile59SerfsTer9	p.I59Sfs*9	ENST00000381527	NM_001260.1	58	Ggg/gg																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36651946	36651947	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004953-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			569	186	420	0	ENST00000244741.5:c.71dup	p.Val25SerfsTer11	p.V25Sfs*11	ENST00000244741	NM_000389.4	23	ggc/ggCc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	225	323	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29917765	29917765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	129	433	0	ENST00000389048.3:c.903G>A	p.Met301Ile	p.M301I	ENST00000389048	NM_004304.4	301	atG/atA																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178095743	178095743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	522	475	0	ENST00000397062.3:c.1588G>C	p.Asp530His	p.D530H	ENST00000397062	NM_006164.4	530	Gat/Cat																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178095822	178095822	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	402	309	0	ENST00000397062.3:c.1509G>C	p.Arg503Ser	p.R503S	ENST00000397062	NM_006164.4	503	agG/agC																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178096076	178096076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	297	237	0	ENST00000397062.3:c.1255G>A	p.Asp419Asn	p.D419N	ENST00000397062	NM_006164.4	419	Gat/Aat																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	594	638	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974783	21974784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	169	234	0	ENST00000304494.5:c.43dup	p.Trp15LeufsTer29	p.W15Lfs*29	ENST00000304494	NM_000077.4	15	tgg/tTgg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974783	21974784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	169	234	0	ENST00000304494.5:c.43dup	p.Trp15LeufsTer29	p.W15Lfs*29	ENST00000304494	NM_000077.4	15	tgg/tTgg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	97	278	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29446269	29446269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1437	104	445	0	ENST00000389048.3:c.3298G>T	p.Gly1100Cys	p.G1100C	ENST00000389048	NM_004304.4	1100	Ggc/Tgc																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53223599	53223599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	47	203	0	ENST00000375401.3:c.3760C>T	p.Arg1254Cys	p.R1254C	ENST00000375401	NM_004187.3	1254	Cgc/Tgc																																												NEWRECORD																																		
CALR	0	MSKCC	GRCh37	19	13050384	13050385	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTCCTAA			P-0010228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1841	130	562	0	ENST00000316448.5:c.338_345dup	p.Ser116PhefsTer44	p.S116Ffs*44	ENST00000316448	NM_004343.3	112	-/TTTCCTAA																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	2792	346	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57864645	57864645	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1323	845	804	4	ENST00000228682.2:c.2122G>T	p.Glu708Ter	p.E708*	ENST00000228682	NM_005269.2	708	Gaa/Taa																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67070596	67070596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	547	411	1	ENST00000412916.2:c.220C>T	p.Gln74Ter	p.Q74*	ENST00000412916		74	Cag/Tag																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111475	8111476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0010508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	185	326	0	ENST00000346208.3:c.962_963insAA	p.Thr322ArgfsTer34	p.T322Rfs*34	ENST00000346208		321	cag/cAAag																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577271	64577272	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACA			P-0010508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	423	451	0	ENST00000337652.1:c.308_310dup	p.Leu103dup	p.L103dup	ENST00000337652	NM_130803.2	103	tcc/tTGTcc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16261080	16261121	+	protein_altering_variant	In_Frame_Del	DEL	ACAGTCGGTTCCACCCAGGGTCCATGCCTGTGATCGACGATC	ACAGTCGGTTCCACCCAGGGTCCATGCCTGTGATCGACGATC	TGA			P-0010508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	112	165	0	ENST00000375759.3:c.8345_8386delinsTGA	p.Asn2782_Arg2796delinsMetSer	p.N2782_R2796delinsMS	ENST00000375759	NM_015001.2	2782	aACAGTCGGTTCCACCCAGGGTCCATGCCTGTGATCGACGATCgt/aTGAgt																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153253747	153253747	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	101	395	0	ENST00000281708.4:c.985+1G>A		p.X329_splice	ENST00000281708	NM_033632.3	329																																													NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5066700	5066700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	262	597	0	ENST00000381652.3:c.1237C>G	p.Leu413Val	p.L413V	ENST00000381652	NM_004972.3	413	Ctg/Gtg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0004692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	368	273	0	ENST00000269305.4:c.378C>G	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taG																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15364965	15364965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0004692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	87	356	0	ENST00000263377.2:c.2156C>G	p.Thr719Arg	p.T719R	ENST00000263377	NM_058243.2	719	aCa/aGa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175324	112175325	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	186	412	0	ENST00000257430.4:c.4035dup	p.Ser1346IlefsTer8	p.S1346Ifs*8	ENST00000257430	NM_000038.5	1345	gaa/gAaa																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	332	706	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	200	531	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11138480	11138480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	243	523	0	ENST00000344626.4:c.3236C>T	p.Ser1079Leu	p.S1079L	ENST00000344626	NM_003072.3	1079	tCg/tTg																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	205	575	0	ENST00000304494.5:c.132C>G	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taG																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974695	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	205	575	0	ENST00000304494.5:c.132C>G	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	taC/taG																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44966766	44966767	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	355	845	0	ENST00000377967.4:c.3991dup	p.Cys1331LeufsTer2	p.C1331Lfs*2	ENST00000377967	NM_021140.2	1330	-/T																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	96	582	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0012573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	39	390	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11217240	11217240	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148486930		P-0012573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	74	579	1	ENST00000361445.4:c.4438C>T	p.Arg1480Cys	p.R1480C	ENST00000361445	NM_004958.3	1480	Cgc/Tgc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48573549	48573549	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	51	466	0	ENST00000342988.3:c.133A>T	p.Lys45Ter	p.K45*	ENST00000342988	NM_005359.5	45	Aag/Tag																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002361-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	232	441	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91358353	91358353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002361-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	67	462	0	ENST00000355112.3:c.4098G>C	p.Lys1366Asn	p.K1366N	ENST00000355112	NM_000057.2	1366	aaG/aaC																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2134515	2134515	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002361-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	83	571	0	ENST00000219476.3:c.4292C>A	p.Ser1431Ter	p.S1431*	ENST00000219476	NM_000548.3	1431	tCg/tAg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11132428	11132428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002361-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	40	633	0	ENST00000344626.4:c.2644G>A	p.Glu882Lys	p.E882K	ENST00000344626	NM_003072.3	882	Gaa/Aaa																																												NEWRECORD																																		
EED	0	MSKCC	GRCh37	11	85979542	85979543	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGACATAC			P-0002361-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	166	362	1	ENST00000263360.6:c.907_914dup	p.His305GlnfsTer14	p.H305Qfs*14	ENST00000263360	NM_003797.3	302	aga/agAGACATACa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108190744	108190745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002361-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	213	409	0	ENST00000278616.4:c.6412dup	p.Arg2138LysfsTer8	p.R2138Kfs*8	ENST00000278616	NM_000051.3	2137	-/A																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	4388	322	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89498400	89498400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	71	344	0	ENST00000336596.2:c.2372C>T	p.Thr791Ile	p.T791I	ENST00000336596	NM_005233.5	791	aCa/aTa																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66356145	66356145	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	491	419	0	ENST00000273854.3:c.1352G>T	p.Ser451Ile	p.S451I	ENST00000273854	NM_004439.5	451	aGc/aTc																																												NEWRECORD																																		
PNRC1	0	MSKCC	GRCh37	6	89793911	89793911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	84	216	0	ENST00000336032.3:c.980C>T	p.Thr327Ile	p.T327I	ENST00000336032	NM_006813.2	327	aCt/aTt																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81392068	81392068	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	214	438	0	ENST00000222390.5:c.209G>T	p.Cys70Phe	p.C70F	ENST00000222390	NM_000601.4	70	tGt/tTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	360	295	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47032587	47032587	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	271	361	0	ENST00000329236.7:c.262A>T	p.Lys88Ter	p.K88*	ENST00000329236	NM_001204466.1	88	Aaa/Taa																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765177	66765177	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	66	179	0	ENST00000374690.3:c.189G>T	p.Gln63His	p.Q63H	ENST00000374690	NM_000044.3	63	caG/caT																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589589	67589606	+	inframe_deletion	In_Frame_Del	DEL	AATATAACACTCAGTTTC	AATATAACACTCAGTTTC	-			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	235	354	0	ENST00000274335.5:c.1354_1371del	p.Tyr452_Gln457del	p.Y452_Q457del	ENST00000274335		451	gAATATAACACTCAGTTTCaa/gaa																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974774	21974775	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCA			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	120	154	0	ENST00000304494.5:c.47_52dup	p.Ala17_Thr18insMetAla	p.A17_T18insMA	ENST00000304494	NM_000077.4	18	acg/aTGGCCAcg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974774	21974775	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCA			P-0002523-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	120	154	0	ENST00000304494.5:c.47_52dup	p.Ala17_Thr18insMetAla	p.A17_T18insMA	ENST00000304494	NM_000077.4	18	acg/aTGGCCAcg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002081-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	378	348	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0002081-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	116	331	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221293	1221293	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002081-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	122	252	0	ENST00000326873.7:c.816C>A	p.Tyr272Ter	p.Y272*	ENST00000326873	NM_000455.4	272	taC/taA																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11141472	11141473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002081-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	133	293	0	ENST00000344626.4:c.3450dup	p.Ile1151HisfsTer25	p.I1151Hfs*25	ENST00000344626	NM_003072.3	1150	ttc/ttCc																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	71	201	2	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	109	398	1	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874092	151874093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	254	683	0	ENST00000262189.6:c.8445dupA	p.Ser2816IlefsTer6	p.S2816Ifs*6	ENST00000262189	NM_170606.2	2815	-/A																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139390656	139390656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	38	715	2	ENST00000277541.6:c.7535C>T	p.Pro2512Leu	p.P2512L	ENST00000277541	NM_017617.3	2512	cCg/cTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49443799	49443799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs112236653		P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	224	581	1	ENST00000301067.7:c.3572C>T	p.Pro1191Leu	p.P1191L	ENST00000301067	NM_003482.3	1191	cCg/cTg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2210735	2210735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	200	646	1	ENST00000398665.3:c.1232G>A	p.Arg411His	p.R411H	ENST00000398665	NM_032482.2	411	cGc/cAc																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65330610	65330611	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	215	587	0	ENST00000342505.4:c.1035dupA	p.Leu346ThrfsTer4	p.L346Tfs*4	ENST00000342505	NM_002227.2	345	-/A																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41574502	41574502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	127	454	1	ENST00000263253.7:c.6787C>T	p.Arg2263Ter	p.R2263*	ENST00000263253	NM_001429.3	2263	Cga/Tga																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16261065	16261065	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181891870		P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	62	198	0	ENST00000375759.3:c.8330C>T	p.Ala2777Val	p.A2777V	ENST00000375759	NM_015001.2	2777	gCg/gTg																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65316513	65316513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	152	374	0	ENST00000342505.4:c.1729C>T	p.Arg577Trp	p.R577W	ENST00000342505	NM_002227.2	577	Cgg/Tgg																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65321195	65321195	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	65	197	0	ENST00000342505.4:c.1645C>T	p.Arg549Ter	p.R549*	ENST00000342505	NM_002227.2	549	Cga/Tga																																												NEWRECORD																																		
RYBP	0	MSKCC	GRCh37	3	72495657	72495657	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	100	319	0	ENST00000477973.2:c.413A>G	p.Thr139Ala	p.T139A	ENST00000477973	NM_012234.5	139	Acc/Gcc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176693	112176693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	107	484	2	ENST00000257430.4:c.5402C>T	p.Ala1801Val	p.A1801V	ENST00000257430	NM_000038.5	1801	gCt/gTt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157405902	157405902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	51	431	0	ENST00000346085.5:c.2144C>T	p.Pro715Leu	p.P715L	ENST00000346085	NM_020732.3	715	cCg/cTg																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2951813	2951813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	139	512	0	ENST00000396946.4:c.3137C>T	p.Ala1046Val	p.A1046V	ENST00000396946	NM_032415.4	1046	gCc/gTc																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5126729	5126729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	206	445	1	ENST00000381652.3:c.3337C>T	p.Arg1113Cys	p.R1113C	ENST00000381652	NM_004972.3	1113	Cgc/Tgc																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	36840613	36840613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	136	396	1	ENST00000358127.4:c.1120G>A	p.Ala374Thr	p.A374T	ENST00000358127	NM_001280556.1	374	Gct/Act																																												NEWRECORD																																		
LMO1	0	MSKCC	GRCh37	11	8252001	8252001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	138	399	0	ENST00000335790.3:c.76G>T	p.Gly26Cys	p.G26C	ENST00000335790	NM_002315.2	26	Ggc/Tgc																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67662396	67662396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	182	626	0	ENST00000264010.4:c.1642C>A	p.Pro548Thr	p.P548T	ENST00000264010	NM_006565.3	548	Ccc/Acc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29586101	29586101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	101	371	1	ENST00000358273.4:c.4384C>T	p.Arg1462Trp	p.R1462W	ENST00000358273	NM_001042492.2	1462	Cgg/Tgg																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38510573	38510573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	142	522	0	ENST00000254066.5:c.827G>A	p.Arg276Gln	p.R276Q	ENST00000254066	NM_000964.3	276	cGg/cAg																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740594	58740594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	269	1047	1	ENST00000305921.3:c.1499C>A	p.Pro500His	p.P500H	ENST00000305921	NM_003620.3	500	cCt/cAt																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39755606	39755606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	179	446	1	ENST00000288319.7:c.1159G>A	p.Ala387Thr	p.A387T	ENST00000288319	NM_182918.3	387	Gcc/Acc																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53247580	53247580	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	37	298	0	ENST00000375401.3:c.229G>C	p.Ala77Pro	p.A77P	ENST00000375401	NM_004187.3	77	Gcc/Ccc																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25966872	25966873	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	167	529	3	ENST00000435504.4:c.2333dupC	p.Val779SerfsTer25	p.V779Sfs*25	ENST00000435504		778	cca/ccCa																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63526212	63526215	+	frameshift_variant	Frame_Shift_Del	DEL	AAGT	AAGT	-			P-0008682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	139	417	0	ENST00000307078.5:c.2411_2414del	p.Tyr804SerfsTer56	p.Y804Sfs*56	ENST00000307078	NM_004655.3	804	tACTTc/tc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	497	292	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720711	89720712	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	80	42	0	ENST00000371953.3:c.867dup	p.Val290SerfsTer8	p.V290Sfs*8	ENST00000371953	NM_000314.4	288	gaa/gAaa																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1612209	1612209	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	128	316	0	ENST00000344749.5:c.1810C>T	p.Arg604Ter	p.R604*	ENST00000344749	NM_001136139.2	604	Cga/Tga																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41989106	41989107	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	712	650	1	ENST00000219905.7:c.1901dup	p.Ser635ValfsTer22	p.S635Vfs*22	ENST00000219905	NM_001164273.1	633	gga/ggAa																																												NEWRECORD																																		
H3F3B	0	MSKCC	GRCh37	17	73774894	73774895	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1281	298	473	0	ENST00000254810.4:c.278dup	p.Gln94AlafsTer4	p.Q94Afs*4	ENST00000254810	NM_005324.3	93	ctg/ctTg																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72400787	72400795	+	inframe_deletion	In_Frame_Del	DEL	TGTTCTGGG	TGTTCTGGG	-			P-0006905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	355	545	0	ENST00000357731.5:c.376_384del	p.Pro126_Thr128del	p.P126_T128del	ENST00000357731	NM_173808.2	126	CCCAGAACA/-																																												NEWRECORD																																		
FAM46C	0	MSKCC	GRCh37	1	118165663	118165663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	117	540	0	ENST00000369448.3:c.173G>A	p.Arg58Gln	p.R58Q	ENST00000369448	NM_017709.3	58	cGg/cAg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212495306	212495306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	123	429	0	ENST00000342788.4:c.1960G>T	p.Ala654Ser	p.A654S	ENST00000342788	NM_005235.2	654	Gca/Tca																																												NEWRECORD																																		
PDCD1	0	MSKCC	GRCh37	2	242794499	242794499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	46	419	1	ENST00000334409.5:c.443G>T	p.Arg148Met	p.R148M	ENST00000334409	NM_005018.2	148	aGg/aTg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	228	378	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65543349	65543349	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	225	735	0	ENST00000358664.4:c.328C>T	p.Gln110Ter	p.Q110*	ENST00000358664	NM_002382.4	110	Caa/Taa																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2222282	2222282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	171	702	0	ENST00000326181.6:c.566G>C	p.Arg189Pro	p.R189P	ENST00000326181	NM_032271.2	189	cGg/cCg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	164	613	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546965	9546965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	62	317	0	ENST00000353224.5:c.1057G>T	p.Gly353Cys	p.G353C	ENST00000353224	NM_177990.2	353	Ggc/Tgc																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988545	36988546	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1548	1638	760	0	ENST00000354822.5:c.107dup	p.His37AlafsTer9	p.H37Afs*9	ENST00000354822	NM_001079668.2	36	aag/aaAg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47034417	47034417	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0005981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	139	266	0	ENST00000329236.7:c.272del		p.X91_splice	ENST00000329236	NM_001204466.1	91																																													NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0010675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	127	265	0	ENST00000275493.2:c.2317_2319dupCAC	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																												NEWRECORD																																		
STK40	0	MSKCC	GRCh37	1	36814416	36814416	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	218	495	0	ENST00000373129.3:c.624G>T	p.Arg208Ser	p.R208S	ENST00000373129	NM_032017.1	208	agG/agT																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	146	329	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100913	27100913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	148	251	0	ENST00000324856.7:c.4195C>T	p.Gln1399Ter	p.Q1399*	ENST00000324856	NM_006015.4	1399	Cag/Tag																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72799727	72799727	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	222	269	0	ENST00000325599.8:c.1442A>G	p.Lys481Arg	p.K481R	ENST00000325599	NM_018130.2	481	aAa/aGa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023046	27023047	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GGCAT			P-0004981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	24	32	0	ENST00000324856.7:c.156_157insTGGCA	p.Ala53TrpfsTer50	p.A53Wfs*50	ENST00000324856	NM_006015.4	51	aag/aaGGCATg																																												NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	174	347	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	179	139	0	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174086	112174086	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	119	394	0	ENST00000257430.4:c.2795C>A	p.Ser932Ter	p.S932*	ENST00000257430	NM_000038.5	932	tCa/tAa																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57858985	57858985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142957882		P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	1058	1068	6	ENST00000228682.2:c.481C>T	p.Arg161Trp	p.R161W	ENST00000228682	NM_005269.2	161	Cgg/Tgg																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31379464	31379464	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	309	461	1	ENST00000328111.2:c.871A>G	p.Thr291Ala	p.T291A	ENST00000328111	NM_006892.3	291	Acc/Gcc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173661	112173662	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	110	327	0	ENST00000257430.4:c.2373_2374del	p.His791GlnfsTer7	p.H791Qfs*7	ENST00000257430	NM_000038.5	790	agACac/agac																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112128198	112128198	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	159	455	0	ENST00000257430.4:c.704del	p.Leu235TyrfsTer58	p.L235Yfs*58	ENST00000257430	NM_000038.5	234	cTt/ct																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	103	281	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100976	27100976	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	268	563	3	ENST00000324856.7:c.4258C>T	p.Gln1420Ter	p.Q1420*	ENST00000324856	NM_006015.4	1420	Cag/Tag																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46511611	46511611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	160	533	0	ENST00000262741.5:c.1166G>A	p.Gly389Glu	p.G389E	ENST00000262741	NM_003629.3	389	gGa/gAa																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46511625	46511625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	159	537	0	ENST00000262741.5:c.1152G>C	p.Glu384Asp	p.E384D	ENST00000262741	NM_003629.3	384	gaG/gaC																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46511694	46511694	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	118	489	0	ENST00000262741.5:c.1083G>C	p.Glu361Asp	p.E361D	ENST00000262741	NM_003629.3	361	gaG/gaC																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46511735	46511735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	88	403	0	ENST00000262741.5:c.1042G>A	p.Glu348Lys	p.E348K	ENST00000262741	NM_003629.3	348	Gaa/Aaa																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46511744	46511744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	77	382	0	ENST00000262741.5:c.1033G>A	p.Glu345Lys	p.E345K	ENST00000262741	NM_003629.3	345	Gag/Aag																																												NEWRECORD																																		
PDCD1	0	MSKCC	GRCh37	2	242793362	242793362	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs137861407		P-0005640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	300	568	0	ENST00000334409.5:c.715G>A	p.Val239Met	p.V239M	ENST00000334409	NM_005018.2	239	Gtg/Atg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115849	8115850	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACATGTCCTCCCT			P-0005640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	258	707	0	ENST00000346208.3:c.1196_1208dup	p.Ser404HisfsTer107	p.S404Hfs*107	ENST00000346208		399	cac/cACATGTCCTCCCTac																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	357	345	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156844747	156844747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1426	518	398	0	ENST00000524377.1:c.1301C>T	p.Thr434Met	p.T434M	ENST00000524377	NM_002529.3	434	aCg/aTg																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	176175972	176175972	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	20	50	0	ENST00000367669.3:c.143T>C	p.Val48Ala	p.V48A	ENST00000367669	NM_022457.5	48	gTg/gCg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212570070	212570070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	134	370	0	ENST00000342788.4:c.1171G>A	p.Val391Ile	p.V391I	ENST00000342788	NM_005235.2	391	Gtc/Atc																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86564590	86564590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	140	274	0	ENST00000274376.6:c.322G>T	p.Ala108Ser	p.A108S	ENST00000274376	NM_002890.2	108	Gct/Tct																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174400	112174400	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	59	112	0	ENST00000257430.4:c.3110del	p.Asn1037ThrfsTer19	p.N1037Tfs*19	ENST00000257430	NM_000038.5	1037	Aac/ac																																												NEWRECORD																																		
RPS6KB2	0	MSKCC	GRCh37	11	67196695	67196696	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	170	145	0	ENST00000312629.5:c.230dupG	p.Tyr78LeufsTer42	p.Y78Lfs*42	ENST00000312629	NM_003952.2	75	aag/aaGg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117958	70117959	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	229	91	0	ENST00000245479.2:c.427dup	p.Trp143LeufsTer109	p.W143Lfs*109	ENST00000245479	NM_000346.3	142	-/T																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36231863	36231879	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGAAGCTTTTCCCTGT	GTGAAGCTTTTCCCTGT	-			P-0000802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	178	240	0	ENST00000300305.3:c.509-4_521del		p.X170_splice	ENST00000300305		170																																													NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766350	66766351	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGT			P-0000637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			82	63	78	1	ENST00000374690.3:c.1368_1370dupTGG	p.Gly473dup	p.G473dup	ENST00000374690	NM_000044.3	473	-/GGT																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	193	378	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52598108	52598108	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	324	758	0	ENST00000394830.3:c.3758C>A	p.Ser1253Ter	p.S1253*	ENST00000394830	NM_018313.4	1253	tCa/tAa																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86685321	86685321	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	75	181	0	ENST00000274376.6:c.3037A>G	p.Ser1013Gly	p.S1013G	ENST00000274376	NM_002890.2	1013	Agt/Ggt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527589	157527589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	24	186	0	ENST00000346085.5:c.5314G>A	p.Ala1772Thr	p.A1772T	ENST00000346085	NM_020732.3	1772	Gca/Aca																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2951891	2951891	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116583746		P-0000637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			727	299	387	0	ENST00000396946.4:c.3059C>T	p.Thr1020Met	p.T1020M	ENST00000396946	NM_032415.4	1020	aCg/aTg																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436635	52436641	+	frameshift_variant	Frame_Shift_Del	DEL	GAGATAA	GAGATAA	-			P-0000637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	135	297	0	ENST00000460680.1:c.2033_2039delTTATCTC	p.Phe678SerfsTer12	p.F678Sfs*12	ENST00000460680	NM_004656.3	678	tTTATCTCc/tc																																												NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0000637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	86	284	0	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0008469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	103	185	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1316	274	551	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579357	7579358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGTTT			P-0008469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	223	356	0	ENST00000269305.4:c.329_330insAAACG	p.Leu111AsnfsTer14	p.L111Nfs*14	ENST00000269305	NM_001126112.2	110	cgt/cgAAACGt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29587480	29587489	+	frameshift_variant	Frame_Shift_Del	DEL	TCGTCTACTC	TCGTCTACTC	-			P-0008469-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	257	385	0	ENST00000358273.4:c.4525_4534del	p.Arg1509GlyfsTer62	p.R1509Gfs*62	ENST00000358273	NM_001042492.2	1508	caTCGTCTACTC/ca																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003790-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			170	79	298	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138199821	138199821	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003790-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			449	62	419	0	ENST00000237289.4:c.1239G>C	p.Lys413Asn	p.K413N	ENST00000237289	NM_001270507.1	413	aaG/aaC																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8504321	8504321	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200847027		P-0003790-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			406	223	557	2	ENST00000356435.5:c.1762C>T	p.Arg588Cys	p.R588C	ENST00000356435		588	Cgc/Tgc																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29130707	29130707	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0003790-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			133	77	277	1	ENST00000328354.6:c.3G>T	p.Met1?	p.M1?	ENST00000328354	NM_007194.3	1	atG/atT																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023529	27023530	+	frameshift_variant	Frame_Shift_Ins	INS	AC	AC	TGT			P-0003790-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			411	318	542	0	ENST00000324856.7:c.635_636delinsTGT	p.Tyr212LeufsTer2	p.Y212Lfs*2	ENST00000324856	NM_006015.4	212	tAC/tTGT																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16262685	16262685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003790-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			213	13	179	0	ENST00000375759.3:c.9950C>T	p.Pro3317Leu	p.P3317L	ENST00000375759	NM_015001.2	3317	cCg/cTg																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55604659	55604659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139694927		P-0003790-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			647	107	546	0	ENST00000288135.5:c.2867G>A	p.Arg956Gln	p.R956Q	ENST00000288135	NM_000222.2	956	cGg/cAg																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106196627	106196627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003790-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			382	64	417	0	ENST00000380013.4:c.4960C>G	p.Gln1654Glu	p.Q1654E	ENST00000380013	NM_001127208.2	1654	Cag/Gag																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860613	151860613	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003790-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			576	174	729	1	ENST00000262189.6:c.10049G>C	p.Arg3350Thr	p.R3350T	ENST00000262189	NM_170606.2	3350	aGa/aCa																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371801	55371801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003790-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			111	10	97	0	ENST00000297316.4:c.491C>T	p.Ala164Val	p.A164V	ENST00000297316	NM_022454.3	164	gCg/gTg																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	459891	459891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003790-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			467	133	656	0	ENST00000399788.2:c.1204G>A	p.Glu402Lys	p.E402K	ENST00000399788	NM_001042603.1	402	Gaa/Aaa																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039407	47039407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003790-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			192	157	351	0	ENST00000329236.7:c.799G>T	p.Gly267Cys	p.G267C	ENST00000329236	NM_001204466.1	267	Ggc/Tgc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	296	356	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga																																												NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0006611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	132	373	1	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148516773	148516773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	47	211	0	ENST00000320356.2:c.914A>G	p.His305Arg	p.H305R	ENST00000320356	NM_004456.4	305	cAt/cGt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49448520	49448520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	120	291	0	ENST00000301067.7:c.191G>A	p.Arg64Gln	p.R64Q	ENST00000301067	NM_003482.3	64	cGg/cAg																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105238740	105238740	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	118	367	0	ENST00000349310.3:c.1222T>G	p.Phe408Val	p.F408V	ENST00000349310	NM_001014432.1	408	Ttt/Gtt																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	74	439	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	127	590	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	32	170	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	97	294	2	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16029457	16029457	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	174	453	0	ENST00000268712.3:c.1573del	p.Thr525GlnfsTer30	p.T525Qfs*30	ENST00000268712	NM_006311.3	525	Aca/ca																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49425038	49425038	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	120	481	0	ENST00000301067.7:c.13450C>T	p.Arg4484Ter	p.R4484*	ENST00000301067	NM_003482.3	4484	Cga/Tga																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	62	386	0	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67671655	67671655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	85	313	0	ENST00000264010.4:c.2070delA	p.Glu691SerfsTer30	p.E691Sfs*30	ENST00000264010	NM_006565.3	688	gtA/gt																																												NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86675571	86675571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	80	191	2	ENST00000274376.6:c.2513del	p.Asn838MetfsTer4	p.N838Mfs*4	ENST00000274376	NM_002890.2	836	gAa/ga																																												NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	125	278	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	125	410	2	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204515939	204515939	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	113	317	2	ENST00000367182.3:c.842del	p.Asn281MetfsTer10	p.N281Mfs*10	ENST00000367182	NM_001278516.1	279	ggA/gg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11217234	11217234	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	90	366	0	ENST00000361445.4:c.4444C>T	p.Arg1482Cys	p.R1482C	ENST00000361445	NM_004958.3	1482	Cgc/Tgc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11317099	11317099	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201093943		P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	127	475	2	ENST00000361445.4:c.395G>A	p.Arg132His	p.R132H	ENST00000361445	NM_004958.3	132	cGt/cAt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023384	27023384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	103	224	0	ENST00000324856.7:c.490G>A	p.Ala164Thr	p.A164T	ENST00000324856	NM_006015.4	164	Gcc/Acc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	59	272	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120496279	120496279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	100	320	2	ENST00000256646.2:c.2252G>A	p.Gly751Asp	p.G751D	ENST00000256646	NM_024408.3	751	gGc/gAc																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48010590	48010590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	92	268	0	ENST00000234420.5:c.218A>G	p.Asn73Ser	p.N73S	ENST00000234420	NM_000179.2	73	aAc/aGc																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61145601	61145601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	158	390	0	ENST00000295025.8:c.713G>A	p.Arg238His	p.R238H	ENST00000295025	NM_002908.2	238	cGt/cAt																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41280754	41280754	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	92	328	0	ENST00000349496.5:c.2267T>C	p.Leu756Pro	p.L756P	ENST00000349496	NM_001904.3	756	cTg/cCg																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49725205	49725205	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	31	122	0	ENST00000449682.2:c.220T>C	p.Cys74Arg	p.C74R	ENST00000449682	NM_020998.3	74	Tgt/Cgt																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55991458	55991458	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	94	380	0	ENST00000263923.4:c.3G>A	p.Met1?	p.M1?	ENST00000263923	NM_002253.2	1	atG/atA																																												NEWRECORD																																		
TET2	54790	MSKCC	GRCh37	4	106197563	106197563	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs745668941		P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	118	456	0	ENST00000380013.4:c.5896C>T	p.Arg1966Cys	p.R1966C	ENST00000380013	NM_001127208.2	1966	Cgt/Tgt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542188	187542188	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	98	394	0	ENST00000441802.2:c.5552A>C	p.Asp1851Ala	p.D1851A	ENST00000441802	NM_005245.3	1851	gAc/gCc																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149502729	149502729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	47	323	0	ENST00000261799.4:c.2059G>A	p.Gly687Arg	p.G687R	ENST00000261799	NM_002609.3	687	Gga/Aga																																												NEWRECORD																																		
VEGFA	0	MSKCC	GRCh37	6	43749782	43749782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	201	579	1	ENST00000523873.1:c.635G>A	p.Arg212His	p.R212H	ENST00000523873		212	cGt/cAt																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553578	106553578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	41	219	0	ENST00000369096.4:c.1543G>A	p.Gly515Arg	p.G515R	ENST00000369096	NM_001198.3	515	Ggg/Agg																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138200087	138200087	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150513567		P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	54	185	1	ENST00000237289.4:c.1505G>A	p.Arg502Gln	p.R502Q	ENST00000237289	NM_001270507.1	502	cGg/cAg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157522283	157522283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	110	403	0	ENST00000346085.5:c.4555C>T	p.Arg1519Cys	p.R1519C	ENST00000346085	NM_020732.3	1519	Cgt/Tgt																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116395560	116395560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	144	231	0	ENST00000397752.3:c.1853C>T	p.Thr618Met	p.T618M	ENST00000397752	NM_000245.2	618	aCg/aTg																																												NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128752783	128752783	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	69	224	0	ENST00000377970.2:c.944G>A	p.Cys315Tyr	p.C315Y	ENST00000377970	NM_002467.4	315	tGc/tAc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145736822	145736822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	114	337	0	ENST00000428558.2:c.3619G>A	p.Ala1207Thr	p.A1207T	ENST00000428558	NM_004260.3	1207	Gcc/Acc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8319901	8319901	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	112	447	0	ENST00000356435.5:c.5600A>G	p.Glu1867Gly	p.E1867G	ENST00000356435		1867	gAa/gGa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8376675	8376675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	100	296	0	ENST00000356435.5:c.4438G>A	p.Val1480Ile	p.V1480I	ENST00000356435		1480	Gtt/Att																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98211514	98211514	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200029534		P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	65	361	0	ENST00000331920.6:c.3641C>T	p.Thr1214Met	p.T1214M	ENST00000331920	NM_000264.3	1214	aCg/aTg																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133753910	133753910	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149852028		P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	96	354	0	ENST00000318560.5:c.1379G>A	p.Arg460His	p.R460H	ENST00000318560	NM_005157.4	460	cGc/cAc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139397706	139397706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	78	268	0	ENST00000277541.6:c.5095G>A	p.Val1699Met	p.V1699M	ENST00000277541	NM_017617.3	1699	Gtg/Atg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139404348	139404348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	103	418	0	ENST00000277541.6:c.2806G>A	p.Gly936Ser	p.G936S	ENST00000277541	NM_017617.3	936	Ggc/Agc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344476	118344476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	63	249	0	ENST00000534358.1:c.2602G>A	p.Val868Met	p.V868M	ENST00000534358	NM_005933.3	868	Gtg/Atg																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4398080	4398080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	83	343	0	ENST00000261254.3:c.644A>G	p.Gln215Arg	p.Q215R	ENST00000261254	NM_001759.3	215	cAg/cGg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49437701	49437701	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	154	621	0	ENST00000301067.7:c.5269C>T	p.Arg1757Ter	p.R1757*	ENST00000301067	NM_003482.3	1757	Cga/Tga																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49446066	49446066	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	85	353	0	ENST00000301067.7:c.1400T>G	p.Leu467Arg	p.L467R	ENST00000301067	NM_003482.3	467	cTg/cGg																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57858476	57858476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199685332		P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	142	676	1	ENST00000228682.2:c.214C>T	p.Arg72Trp	p.R72W	ENST00000228682	NM_005269.2	72	Cgg/Tgg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133201338	133201338	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	64	414	0	ENST00000320574.5:c.6806A>G	p.Tyr2269Cys	p.Y2269C	ENST00000320574	NM_006231.2	2269	tAc/tGc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133219278	133219278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	92	328	0	ENST00000320574.5:c.4766C>T	p.Ser1589Phe	p.S1589F	ENST00000320574	NM_006231.2	1589	tCc/tTc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133219579	133219579	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	39	221	0	ENST00000320574.5:c.4555C>T	p.Arg1519Cys	p.R1519C	ENST00000320574	NM_006231.2	1519	Cgc/Tgc																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21563252	21563252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	80	410	0	ENST00000382592.4:c.667G>A	p.Gly223Arg	p.G223R	ENST00000382592	NM_014572.2	223	Ggg/Agg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3778603	3778603	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147448293		P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	64	272	0	ENST00000262367.5:c.6445G>A	p.Val2149Met	p.V2149M	ENST00000262367	NM_004380.2	2149	Gtg/Atg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3781417	3781417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	36	221	0	ENST00000262367.5:c.4948G>A	p.Val1650Ile	p.V1650I	ENST00000262367	NM_004380.2	1650	Gtc/Atc																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117573	70117573	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	94	362	0	ENST00000245479.2:c.41A>G	p.Gln14Arg	p.Q14R	ENST00000245479	NM_000346.3	14	cAg/cGg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78897438	78897438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	103	457	0	ENST00000306801.3:c.2773C>T	p.Arg925Trp	p.R925W	ENST00000306801	NM_020761.2	925	Cgg/Tgg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7174633	7174633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs72549237		P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	122	478	1	ENST00000302850.5:c.1084G>A	p.Val362Ile	p.V362I	ENST00000302850	NM_000208.2	362	Gtc/Atc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11105645	11105645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	72	323	0	ENST00000344626.4:c.1561C>T	p.Arg521Trp	p.R521W	ENST00000344626	NM_003072.3	521	Cgg/Tgg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15276788	15276788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	111	466	0	ENST00000263388.2:c.5477G>A	p.Cys1826Tyr	p.C1826Y	ENST00000263388	NM_000435.2	1826	tGc/tAc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15281554	15281554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	115	460	0	ENST00000263388.2:c.4819G>A	p.Ala1607Thr	p.A1607T	ENST00000263388	NM_000435.2	1607	Gcc/Acc																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50919079	50919079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	88	497	0	ENST00000440232.2:c.2816C>T	p.Ser939Leu	p.S939L	ENST00000440232	NM_002691.3	939	tCg/tTg																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30032747	30032747	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	98	261	0	ENST00000338641.4:c.122G>A	p.Trp41Ter	p.W41*	ENST00000338641	NM_000268.3	41	tGg/tAg																																												NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72821960	72821960	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	109	395	3	ENST00000268489.5:c.10215del	p.Ala3407LeufsTer78	p.A3407Lfs*78	ENST00000268489	NM_006885.3	3405	ccC/cc																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	431595	431595	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	113	287	0	ENST00000399788.2:c.2414del	p.Lys805SerfsTer17	p.K805Sfs*17	ENST00000399788	NM_001042603.1	805	aAg/ag																																												NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78430775	78430775	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	97	311	0	ENST00000370768.2:c.614del	p.Gly205GlufsTer17	p.G205Efs*17	ENST00000370768	NM_003902.3	205	gGa/ga																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115780	8115780	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	183	563	2	ENST00000346208.3:c.1131del	p.Val378CysfsTer26	p.V378Cfs*26	ENST00000346208		376	Aaa/aa																																												NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	159	357	3	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56852600	56852600	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	150	535	1	ENST00000308159.5:c.518del	p.Pro173LeufsTer25	p.P173Lfs*25	ENST00000308159	NM_014669.4	172	Ccc/cc																																												NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63852118	63852118	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	25	243	0	ENST00000279873.7:c.2901del	p.Lys967AsnfsTer15	p.K967Nfs*15	ENST00000279873	NM_032199.2	966	Aaa/aa																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32180979	32180981	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	60	373	0	ENST00000375023.3:c.2369_2371del	p.Ser790del	p.S790del	ENST00000375023	NM_004557.3	790	tCCTgc/tgc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72845830	72845830	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	154	617	0	ENST00000268489.5:c.3637del	p.Thr1213GlnfsTer31	p.T1213Qfs*31	ENST00000268489	NM_006885.3	1213	Aca/ca																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71019947	71019950	+	frameshift_variant	Frame_Shift_Del	DEL	GGAA	GGAA	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	52	272	0	ENST00000318789.4:c.1659_1662del	p.Ser554LeufsTer44	p.S554Lfs*44	ENST00000318789	NM_032682.5	553	ccTTCC/cc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32181929	32181929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	95	475	0	ENST00000375023.3:c.2125del	p.Gln709SerfsTer22	p.Q709Sfs*22	ENST00000375023	NM_004557.3	709	Cag/ag																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150005408	150005409	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	87	345	0	ENST00000253339.5:c.816_817del	p.Gln273AsnfsTer41	p.Q273Nfs*41	ENST00000253339		272	tcTCaa/tcaa																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63759976	63759977	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	97	247	1	ENST00000279873.7:c.635dup	p.Ile213HisfsTer18	p.I213Hfs*18	ENST00000279873	NM_032199.2	210	ctg/ctGg																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43619159	43619159	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	65	386	0	ENST00000355710.3:c.2846del	p.Gly949GlufsTer16	p.G949Efs*16	ENST00000355710	NM_020975.4	948	Ggg/gg																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133760264	133760264	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs67129258		P-0003555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	44	278	0	ENST00000318560.5:c.2591delG	p.Gly864AlafsTer12	p.G864Afs*12	ENST00000318560	NM_005157.4	863	Ggg/gg																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21555667	21555683	+	frameshift_variant	Frame_Shift_Del	DEL	CACCTCTGGTGCTGCTT	CACCTCTGGTGCTGCTT	-			P-0002864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			836	118	510	0	ENST00000382592.4:c.2587_2603del	p.Lys863ProfsTer27	p.K863Pfs*27	ENST00000382592	NM_014572.2	863	AAGCAGCACCAGAGGTGc/c																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30050681	30050682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	82	415	0	ENST00000338641.4:c.488dup	p.Leu163PhefsTer40	p.L163Ffs*40	ENST00000338641	NM_000268.3	161	-/T																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25965526	25965527	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0002864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			846	159	537	0	ENST00000435504.4:c.3679_3680delinsAG	p.Ala1227Ser	p.A1227S	ENST00000435504		1227	GCt/AGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003536-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			200	352	607	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0003536-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			136	510	351	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0003536-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			136	510	351	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29012465	29012465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003536-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			334	294	425	0	ENST00000282397.4:c.406G>A	p.Val136Ile	p.V136I	ENST00000282397	NM_002019.4	136	Gta/Ata																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007741	45007741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003536-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			489	285	465	0	ENST00000558401.1:c.188G>T	p.Gly63Val	p.G63V	ENST00000558401	NM_004048.2	63	gGa/gTa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8500832	8500832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003536-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			847	61	522	0	ENST00000356435.5:c.2050C>T	p.Arg684Trp	p.R684W	ENST00000356435		684	Cgg/Tgg																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43598011	43598011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003536-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			548	34	413	0	ENST00000355710.3:c.559C>A	p.Gln187Lys	p.Q187K	ENST00000355710	NM_020975.4	187	Cag/Aag																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69222698	69222698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003536-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			685	74	594	0	ENST00000462284.1:c.671C>T	p.Thr224Met	p.T224M	ENST00000462284	NM_002392.5	224	aCg/aTg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	140	480	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	443471	443471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	71	591	0	ENST00000399788.2:c.1426T>C	p.Cys476Arg	p.C476R	ENST00000399788	NM_001042603.1	476	Tgc/Cgc																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			965	280	600	0	ENST00000349496.5:c.110C>A	p.Ser37Tyr	p.S37Y	ENST00000349496	NM_001904.3	37	tCt/tAt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			846	231	491	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0000024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	317	783	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105878	27105881	+	frameshift_variant	Frame_Shift_Del	DEL	AGCT	AGCT	-			P-0000024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	234	588	0	ENST00000324856.7:c.5489_5492delAGCT	p.Lys1830MetfsTer52	p.K1830Mfs*52	ENST00000324856	NM_006015.4	1830	aAGCTt/at																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591238	67591248	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTTTTTCAGG	TGTTTTTCAGG	-			P-0000024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			762	445	442	0	ENST00000274335.5:c.1746-8_1748delTTTTTCAGGTG		p.X582_splice	ENST00000274335		582																																													NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720720	89720721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000024-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	53	88	0	ENST00000371953.3:c.875dupA	p.Asn292LysfsTer6	p.N292Kfs*6	ENST00000371953	NM_000314.4	291	gaa/gAaa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	129	310	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49444297	49444297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	96	427	1	ENST00000301067.7:c.3074C>T	p.Ser1025Leu	p.S1025L	ENST00000301067	NM_003482.3	1025	tCg/tTg																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25497847	25497847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	75	299	1	ENST00000264709.3:c.602G>A	p.Arg201His	p.R201H	ENST00000264709	NM_175629.2	201	cGc/cAc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157100414	157100414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	14	48	0	ENST00000346085.5:c.1351T>C	p.Ser451Pro	p.S451P	ENST00000346085	NM_020732.3	451	Tcg/Ccg																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134920458	134920458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	76	361	0	ENST00000398015.3:c.2273G>A	p.Cys758Tyr	p.C758Y	ENST00000398015	NM_004441.4	758	tGc/tAc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32180641	32180641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	102	312	1	ENST00000375023.3:c.2486G>A	p.Arg829His	p.R829H	ENST00000375023	NM_004557.3	829	cGc/cAc																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553090	106553090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	161	290	0	ENST00000369096.4:c.1055C>T	p.Pro352Leu	p.P352L	ENST00000369096	NM_001198.3	352	cCt/cTt																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139411769	139411769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	52	356	0	ENST00000277541.6:c.1510C>T	p.Arg504Cys	p.R504C	ENST00000277541	NM_017617.3	504	Cgc/Tgc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63851345	63851345	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	88	214	0	ENST00000279873.7:c.2123A>G	p.Tyr708Cys	p.Y708C	ENST00000279873	NM_032199.2	708	tAc/tGc																																												NEWRECORD																																		
GREM1	0	MSKCC	GRCh37	15	33023100	33023100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	61	403	0	ENST00000300177.4:c.209G>C	p.Gly70Ala	p.G70A	ENST00000300177	NM_001191322.1	70	gGg/gCg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81972440	81972440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	149	543	2	ENST00000359376.3:c.3233G>A	p.Arg1078Gln	p.R1078Q	ENST00000359376	NM_002661.3	1078	cGa/cAa																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39762932	39762932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	54	345	0	ENST00000288319.7:c.904C>T	p.Arg302Cys	p.R302C	ENST00000288319	NM_182918.3	302	Cgc/Tgc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56440635	56440636	+	stop_gained,frameshift_variant,splice_region_variant	Nonsense_Mutation	INS	-	-	CCAGGCCGGGGGCTCCTTCAGCTCAATCCTCACATGGG			P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	120	360	0	ENST00000407977.2:c.545_582dup	p.Asp196MetfsTer2	p.D196Mfs*2	ENST00000407977		194	-/CCCATGTGAGGATTGAGCTGAAGGAGCCCCCGGCCTGG																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576926	7576929	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTA	GCTA	-			P-0006834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	128	323	0	ENST00000269305.4:c.920-3_920del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																													NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	162	242	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	97	175	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057727	27057727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	169	683	1	ENST00000324856.7:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000324856	NM_006015.4	479	Cag/Tag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057647	27057647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	123	482	0	ENST00000324856.7:c.1355C>G	p.Pro452Arg	p.P452R	ENST00000324856	NM_006015.4	452	cCt/cGt																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89390197	89390197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	100	402	0	ENST00000336596.2:c.946G>A	p.Asp316Asn	p.D316N	ENST00000336596	NM_005233.5	316	Gac/Aac																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131973826	131973826	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	211	347	0	ENST00000265335.6:c.3529G>C	p.Asp1177His	p.D1177H	ENST00000265335		1177	Gat/Cat																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	206	878	1	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101904949	101904949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	101	335	0	ENST00000374994.4:c.937C>G	p.Leu313Val	p.L313V	ENST00000374994	NM_004612.2	313	Ctt/Gtt																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28964207	28964207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	78	243	0	ENST00000282397.4:c.1695A>T	p.Lys565Asn	p.K565N	ENST00000282397	NM_002019.4	565	aaA/aaT																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32893373	32893373	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	98	356	0	ENST00000380152.3:c.227C>G	p.Ser76Ter	p.S76*	ENST00000380152		76	tCa/tGa																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15375435	15375435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	109	445	1	ENST00000263377.2:c.992C>A	p.Pro331Gln	p.P331Q	ENST00000263377	NM_058243.2	331	cCa/cAa																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50905112	50905112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	170	614	0	ENST00000440232.2:c.394G>A	p.Asp132Asn	p.D132N	ENST00000440232	NM_002691.3	132	Gat/Aat																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44942789	44942790	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0005489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	156	286	0	ENST00000377967.4:c.3369_3370insTA	p.His1124TyrfsTer7	p.H1124Yfs*7	ENST00000377967	NM_021140.2	1123	-/TA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	214	341	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99465636	99465636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	11	104	0	ENST00000268035.6:c.2461G>A	p.Val821Ile	p.V821I	ENST00000268035	NM_000875.3	821	Gtc/Atc																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18280049	18280086	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGGCGCACCCAGTGCGCGCCCCGGGCCCCGGCCCG	CCCTGGCGCACCCAGTGCGCGCCCCGGGCCCCGGCCCG	-			P-0010465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	79	77	0	ENST00000222254.8:c.2134_2171del	p.Leu712AlafsTer86	p.L712Afs*86	ENST00000222254	NM_005027.3	711	aCCCTGGCGCACCCAGTGCGCGCCCCGGGCCCCGGCCCG/a																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204513806	204513807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	187	207	1	ENST00000367182.3:c.821dup	p.Val275GlyfsTer3	p.V275Gfs*3	ENST00000367182	NM_001278516.1	272	-/A																																												NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	126	252	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	73	345	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	57	243	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7143049	7143049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	48	222	3	ENST00000302850.5:c.2320G>A	p.Val774Met	p.V774M	ENST00000302850	NM_000208.2	774	Gtg/Atg																																												NEWRECORD																																		
ARID5B	84159	MSKCC	GRCh37	10	63850705	63850705	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	145	443	0	ENST00000279873.7:c.1489del	p.Ile497Ter	p.I497*	ENST00000279873	NM_032199.2	495	Aaa/aa																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	258	335	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	112	329	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2968266	2968266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	136	453	0	ENST00000396946.4:c.1720G>A	p.Val574Ile	p.V574I	ENST00000396946	NM_032415.4	574	Gtc/Atc																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9775985	9775985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201492009		P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	59	179	0	ENST00000377346.4:c.449C>T	p.Ala150Val	p.A150V	ENST00000377346	NM_005026.3	150	gCg/gTg																																												NEWRECORD																																		
NFKBIA	0	MSKCC	GRCh37	14	35872018	35872018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	218	670	1	ENST00000216797.5:c.595G>A	p.Val199Met	p.V199M	ENST00000216797	NM_020529.2	199	Gtg/Atg																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45375016	45375016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	86	289	0	ENST00000262160.6:c.827C>T	p.Ser276Leu	p.S276L	ENST00000262160	NM_005901.5	276	tCg/tTg																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26101072	26101072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	153	566	0	ENST00000435504.4:c.20G>A	p.Arg7Lys	p.R7K	ENST00000435504		7	aGg/aAg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29443675	29443675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	86	215	0	ENST00000389048.3:c.3542G>A	p.Arg1181His	p.R1181H	ENST00000389048	NM_004304.4	1181	cGc/cAc																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12641689	12641689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	111	367	1	ENST00000251849.4:c.952C>T	p.Arg318Trp	p.R318W	ENST00000251849	NM_002880.3	318	Cgg/Tgg																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37053310	37053310	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	192	390	0	ENST00000231790.2:c.546-1G>A		p.X182_splice	ENST00000231790	NM_000249.3	182																																													NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175025	112175025	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	89	279	0	ENST00000257430.4:c.3734A>C	p.Lys1245Thr	p.K1245T	ENST00000257430	NM_000038.5	1245	aAg/aCg																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149504355	149504355	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	84	303	0	ENST00000261799.4:c.1847A>C	p.Glu616Ala	p.E616A	ENST00000261799	NM_002609.3	616	gAg/gCg																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63851485	63851485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	69	152	0	ENST00000279873.7:c.2263G>A	p.Val755Ile	p.V755I	ENST00000279873	NM_032199.2	755	Gtc/Atc																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856472	111856472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	85	296	2	ENST00000341259.2:c.523C>T	p.Arg175Trp	p.R175W	ENST00000341259	NM_005475.2	175	Cgg/Tgg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28893578	28893578	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	101	369	0	ENST00000282397.4:c.3268T>G	p.Trp1090Gly	p.W1090G	ENST00000282397	NM_002019.4	1090	Tgg/Ggg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2124255	2124255	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	112	357	0	ENST00000219476.3:c.2410T>C	p.Cys804Arg	p.C804R	ENST00000219476	NM_000548.3	804	Tgc/Cgc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9984931	9984931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	173	497	1	ENST00000330684.3:c.1034G>A	p.Gly345Asp	p.G345D	ENST00000330684	NM_001134407.1	345	gGc/gAc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991497	72991497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	187	647	0	ENST00000268489.5:c.2548C>A	p.Leu850Ile	p.L850I	ENST00000268489	NM_006885.3	850	Ctc/Atc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89346583	89346583	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	94	406	0	ENST00000301030.4:c.6367G>A	p.Ala2123Thr	p.A2123T	ENST00000301030	NM_001256183.1	2123	Gcc/Acc																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89845237	89845237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	158	452	1	ENST00000389301.3:c.1798C>T	p.Arg600Cys	p.R600C	ENST00000389301	NM_000135.2	600	Cgt/Tgt																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435837	56435837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	68	209	0	ENST00000407977.2:c.1300C>T	p.Pro434Ser	p.P434S	ENST00000407977		434	Ccc/Tcc																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39570487	39570487	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	114	469	0	ENST00000262039.4:c.683A>T	p.Asp228Val	p.D228V	ENST00000262039	NM_002647.2	228	gAt/gTt																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10259628	10259628	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	133	476	0	ENST00000340748.4:c.2604G>A	p.Trp868Ter	p.W868*	ENST00000340748		868	tgG/tgA																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57484426	57484426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	115	294	0	ENST00000371085.3:c.607C>A	p.Leu203Met	p.L203M	ENST00000371085	NM_000516.4	203	Ctg/Atg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47084145	47084146	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	82	363	0	ENST00000409792.3:c.7143dupC	p.Ser2382LeufsTer47	p.S2382Lfs*47	ENST00000409792	NM_014159.6	2381	-/C																																												NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47143009	47143010	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	109	564	0	ENST00000409792.3:c.4953dup	p.Thr1652TyrfsTer14	p.T1652Yfs*14	ENST00000409792	NM_014159.6	1651	-/T																																												NEWRECORD																																		
SRSF2	0	MSKCC	GRCh37	17	74732279	74732279	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	205	617	0	ENST00000359995.5:c.630del	p.Lys211SerfsTer21	p.K211Sfs*21	ENST00000359995	NM_001195427.1	210	ccC/cc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187557272	187557273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	120	407	0	ENST00000441802.2:c.4089dupT	p.Thr1364TyrfsTer8	p.T1364Yfs*8	ENST00000441802	NM_005245.3	1363	-/T																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435293	110435295	+	inframe_deletion	In_Frame_Del	DEL	CGG	CGG	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	26	59	0	ENST00000375856.3:c.3106_3108del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1036	CCG/-																																												NEWRECORD																																		
JUN	3725	MSKCC	GRCh37	1	59248461	59248461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	79	304	0	ENST00000371222.2:c.282del	p.Thr95ProfsTer9	p.T95Pfs*9	ENST00000371222	NM_002228.3	94	ccC/cc																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31022666	31022667	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	99	367	0	ENST00000375687.4:c.2156_2157del	p.Glu719GlyfsTer54	p.E719Gfs*54	ENST00000375687	NM_015338.5	717	agGAga/agga																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134670328	134670328	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	77	310	3	ENST00000398015.3:c.244delG	p.Ala82ProfsTer12	p.A82Pfs*12	ENST00000398015	NM_004441.4	80	cGg/cg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	57	398	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9525048	9525048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	33	653	0	ENST00000353224.5:c.1837G>A	p.Glu613Lys	p.E613K	ENST00000353224	NM_177990.2	613	Gag/Aag																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142268377	142268377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	42	561	0	ENST00000350721.4:c.3115C>A	p.His1039Asn	p.H1039N	ENST00000350721	NM_001184.3	1039	Cat/Aat																																												NEWRECORD																																		
FAM175A	0	MSKCC	GRCh37	4	84403342	84403342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	59	717	0	ENST00000321945.7:c.143C>T	p.Ser48Phe	p.S48F	ENST00000321945	NM_139076.2	48	tCc/tTc																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100998706	100998706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	49	836	0	ENST00000325455.5:c.1096G>C	p.Asp366His	p.D366H	ENST00000325455	NM_001202474.3	366	Gac/Cac																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32906883	32906883	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	44	414	0	ENST00000380152.3:c.1268T>A	p.Ile423Asn	p.I423N	ENST00000380152		423	aTt/aAt																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103515177	103515177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	23	445	0	ENST00000355739.4:c.1678C>T	p.Leu560Phe	p.L560F	ENST00000355739	NM_000123.3	560	Ctt/Ttt																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11958249	11958249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	30	304	0	ENST00000353533.5:c.159C>G	p.Phe53Leu	p.F53L	ENST00000353533	NM_003010.3	53	ttC/ttG																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37619113	37619113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	41	618	0	ENST00000447079.4:c.789G>C	p.Lys263Asn	p.K263N	ENST00000447079	NM_015083.1	263	aaG/aaC																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842402	68842403	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0004346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	102	768	0	ENST00000261769.5:c.464_465dup	p.Trp156ThrfsTer60	p.W156Tfs*60	ENST00000261769	NM_004360.3	155	gac/gACac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	457	245	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78936768	78936768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1314	258	366	1	ENST00000306801.3:c.3850G>A	p.Gly1284Arg	p.G1284R	ENST00000306801	NM_020761.2	1284	Gga/Aga																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36259278	36259279	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	152	148	0	ENST00000300305.3:c.212dup	p.Arg72GlufsTer66	p.R72Efs*66	ENST00000300305		71	ctg/ctTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	166	363	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56161270	56161270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	192	393	0	ENST00000399503.3:c.1139T>C	p.Leu380Ser	p.L380S	ENST00000399503	NM_005921.1	380	tTa/tCa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637723	176637723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			749	84	371	0	ENST00000439151.2:c.2323C>G	p.Gln775Glu	p.Q775E	ENST00000439151	NM_022455.4	775	Caa/Gaa																																												NEWRECORD																																		
RAD51	0	MSKCC	GRCh37	15	41001291	41001291	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			779	93	383	0	ENST00000267868.3:c.412C>G	p.His138Asp	p.H138D	ENST00000267868	NM_002875.4	138	Cat/Gat																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842658	68842659	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	229	395	0	ENST00000261769.5:c.595dupA	p.Thr199AsnfsTer10	p.T199Nfs*10	ENST00000261769	NM_004360.3	198	-/A																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	122	365	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	106	381	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89880997	89880997	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	315	657	0	ENST00000389301.3:c.214T>A	p.Leu72Met	p.L72M	ENST00000389301	NM_000135.2	72	Ttg/Atg																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56437593	56437593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	182	320	0	ENST00000407977.2:c.869G>T	p.Cys290Phe	p.C290F	ENST00000407977		290	tGc/tTc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5215357	5215357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	300	534	0	ENST00000357368.4:c.4261C>T	p.Arg1421Cys	p.R1421C	ENST00000357368	NM_002850.3	1421	Cgc/Tgc																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12641205	12641206	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATAAACAGTTCCAAAAGAGCCTGACCCAATCC			P-0007698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	168	660	0	ENST00000251849.4:c.1061_1092dup	p.Lys365GlyfsTer21	p.K365Gfs*21	ENST00000251849	NM_002880.3	364	-/GGATTGGGTCAGGCTCTTTTGGAACTGTTTAT																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	443491	443491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	169	335	0	ENST00000399788.2:c.1406C>T	p.Pro469Leu	p.P469L	ENST00000399788	NM_001042603.1	469	cCg/cTg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156849800	156849800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	161	287	2	ENST00000524377.1:c.2056C>T	p.Arg686Cys	p.R686C	ENST00000524377	NM_002529.3	686	Cgc/Tgc																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106164914	106164914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	150	176	0	ENST00000380013.4:c.3782G>A	p.Arg1261His	p.R1261H	ENST00000380013	NM_001127208.2	1261	cGc/cAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112137082	112137082	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	130	252	0	ENST00000257430.4:c.834+2T>A		p.X278_splice	ENST00000257430	NM_000038.5	278																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	191	285	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49416365	49416379	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTCATACCTGCTCT	GCTCATACCTGCTCT	-			P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	120	221	0	ENST00000301067.7:c.16332_16338+8del		p.X5444_splice	ENST00000301067	NM_003482.3	5444																																													NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119730	70119731	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	327	404	0	ENST00000245479.2:c.734_735dup	p.Gln246CysfsTer8	p.Q246Cfs*8	ENST00000245479	NM_000346.3	244	-/GT																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002529-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	196	402	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			604	197	697	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	53	509	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	125	668	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	52	483	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41076949	41076949	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			644	165	647	0	ENST00000373198.4:c.1471G>T	p.Glu491Ter	p.E491*	ENST00000373198	NM_133170.3	491	Gaa/Taa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	99	487	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119814	70119815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0002728-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	173	655	0	ENST00000245479.2:c.818_819dup	p.Asp274TrpfsTer6	p.D274Wfs*6	ENST00000245479	NM_000346.3	272	-/GT																																												NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0012854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	195	592	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0012854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	331	650	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																												NEWRECORD																																		
PDPK1	0	MSKCC	GRCh37	16	2588139	2588139	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0012854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	61	145	0	ENST00000342085.4:c.24+2T>G		p.X8_splice	ENST00000342085	NM_002613.4	8																																													NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89462351	89462351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	154	495	0	ENST00000336596.2:c.1823C>A	p.Ala608Asp	p.A608D	ENST00000336596	NM_005233.5	608	gCt/gAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	343	337	1	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	253	403	1	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245060	46245060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	267	517	1	ENST00000334344.6:c.3154C>T	p.Pro1052Ser	p.P1052S	ENST00000334344	NM_152641.2	1052	Cct/Tct																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81888168	81888168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	383	719	0	ENST00000359376.3:c.313G>A	p.Val105Ile	p.V105I	ENST00000359376	NM_002661.3	105	Gtc/Atc																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119829	70119830	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	281	588	0	ENST00000245479.2:c.832_833dup	p.Ser279Ter	p.S279*	ENST00000245479	NM_000346.3	277	-/CT																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162622262	162622262	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	75	429	0	ENST00000366898.1:c.435del	p.Tyr147MetfsTer30	p.Y147Mfs*30	ENST00000366898	NM_004562.2	145	agC/ag																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120426	70120427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	240	863	0	ENST00000245479.2:c.1429dup	p.Tyr477LeufsTer101	p.Y477Lfs*101	ENST00000245479	NM_000346.3	476	-/T																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000209-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			361	215	248	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67660536	67660536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000209-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			677	315	376	0	ENST00000264010.4:c.1436G>A	p.Arg479His	p.R479H	ENST00000264010	NM_006565.3	479	cGc/cAc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29556481	29556481	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0000209-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			204	123	132	0	ENST00000358273.4:c.2848C>T	p.Gln950Ter	p.Q950*	ENST00000358273	NM_001042492.2	950	Cag/Tag																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589618	67589619	+	inframe_insertion	In_Frame_Ins	INS	-	-	GAGAATATGATAGATTATATGAAG			P-0000209-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			830	177	323	0	ENST00000274335.5:c.1382_1405dup	p.Glu468_Glu469insGlyGluTyrAspArgLeuTyrGlu	p.E468_E469insGEYDRLYE	ENST00000274335		461	cga/cGAGAATATGATAGATTATATGAAGga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7573970	7573994	+	frameshift_variant	Frame_Shift_Del	DEL	CATCCTTGAGTTCCAAGGCCTCATT	CATCCTTGAGTTCCAAGGCCTCATT	-			P-0000209-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			445	306	331	0	ENST00000269305.4:c.1033_1057del	p.Asn345ProfsTer17	p.N345Pfs*17	ENST00000269305	NM_001126112.2	345	AATGAGGCCTTGGAACTCAAGGATGcc/cc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	226	338	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0014273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	506	792	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126																																													NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149509408	149509409	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014273-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	210	601	0	ENST00000261799.4:c.1490dup	p.Gln498AlafsTer34	p.Q498Afs*34	ENST00000261799	NM_002609.3	497	ctg/ctTg																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	32	710	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0013582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	442	637	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	113	476	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142217556	142217557	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	112	636	0	ENST00000350721.4:c.5440dupA	p.Arg1814LysfsTer8	p.R1814Kfs*8	ENST00000350721	NM_001184.3	1814	aga/aAga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	130	472	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	112	542	1	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9778972	9778972	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	76	295	0	ENST00000377346.4:c.1241C>T	p.Ala414Val	p.A414V	ENST00000377346	NM_005026.3	414	gCg/gTg																																												NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	141	551	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14026115	14026116	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	180	584	0	ENST00000311895.7:c.1081dup	p.Met361AsnfsTer4	p.M361Nfs*4	ENST00000311895	NM_005236.2	359	gaa/gAaa																																												NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	93	492	2	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1311	313	843	4	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
TRAF2	0	MSKCC	GRCh37	9	139793211	139793212	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	230	677	1	ENST00000247668.2:c.26dup	p.Gly10TrpfsTer70	p.G10Wfs*70	ENST00000247668	NM_021138.3	7	acc/aCcc																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	154	423	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720712	89720712	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	15	95	0	ENST00000371953.3:c.867del	p.Val290Ter	p.V290*	ENST00000371953	NM_000314.4	288	gAa/ga																																												NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70117594	70117594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	231	480	0	ENST00000245479.2:c.66del	p.Ser23AlafsTer38	p.S23Afs*38	ENST00000245479	NM_000346.3	21	gCc/gc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120457933	120457933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	83	373	0	ENST00000256646.2:c.7412C>T	p.Ala2471Val	p.A2471V	ENST00000256646	NM_024408.3	2471	gCg/gTg																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52442044	52442044	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	132	534	0	ENST00000460680.1:c.305A>G	p.Asn102Ser	p.N102S	ENST00000460680	NM_004656.3	102	aAc/aGc																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86659191	86659191	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	87	391	0	ENST00000274376.6:c.1480T>C	p.Tyr494His	p.Y494H	ENST00000274376	NM_002890.2	494	Tat/Cat																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176903	112176903	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	124	514	0	ENST00000257430.4:c.5612A>T	p.Asp1871Val	p.D1871V	ENST00000257430	NM_000038.5	1871	gAt/gTt																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38275842	38275842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	241	603	1	ENST00000425967.3:c.1427G>T	p.Arg476Leu	p.R476L	ENST00000425967	NM_001174067.1	476	cGg/cTg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89653836	89653836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	129	454	0	ENST00000371953.3:c.134T>C	p.Val45Ala	p.V45A	ENST00000371953	NM_000314.4	45	gTa/gCa																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123298226	123298226	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	79	350	1	ENST00000358487.5:c.628C>T	p.Arg210Ter	p.R210*	ENST00000358487	NM_000141.4	210	Cga/Tga																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77047314	77047314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	166	553	0	ENST00000356341.3:c.1230C>A	p.Phe410Leu	p.F410L	ENST00000356341	NM_002576.4	410	ttC/ttA																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118374798	118374798	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	148	566	0	ENST00000534358.1:c.8191A>G	p.Thr2731Ala	p.T2731A	ENST00000534358	NM_005933.3	2731	Act/Gct																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	402031	402031	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	92	560	0	ENST00000399788.2:c.4760A>G	p.Lys1587Arg	p.K1587R	ENST00000399788	NM_001042603.1	1587	aAg/aGg																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18658254	18658254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	42	516	0	ENST00000266497.5:c.3059C>A	p.Ala1020Asp	p.A1020D	ENST00000266497		1020	gCt/gAt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244913	46244913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	169	626	0	ENST00000334344.6:c.3007G>A	p.Val1003Ile	p.V1003I	ENST00000334344	NM_152641.2	1003	Gtc/Atc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133214672	133214672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	67	606	0	ENST00000320574.5:c.5606A>G	p.Asn1869Ser	p.N1869S	ENST00000320574	NM_006231.2	1869	aAc/aGc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32954040	32954040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	159	546	0	ENST00000380152.3:c.9107A>G	p.Gln3036Arg	p.Q3036R	ENST00000380152		3036	cAa/cGa																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48881543	48881543	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	156	457	2	ENST00000267163.4:c.264+1G>A		p.X88_splice	ENST00000267163	NM_000321.2	88																																													NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48955562	48955562	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	124	467	0	ENST00000267163.4:c.1678T>C	p.Ser560Pro	p.S560P	ENST00000267163	NM_000321.2	560	Tcc/Ccc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5225777	5225777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	237	570	3	ENST00000357368.4:c.2455G>A	p.Ala819Thr	p.A819T	ENST00000357368	NM_002850.3	819	Gct/Act																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7166396	7166396	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	191	481	0	ENST00000302850.5:c.1630G>T	p.Glu544Ter	p.E544*	ENST00000302850	NM_000208.2	544	Gag/Tag																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11145589	11145589	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	101	323	0	ENST00000344626.4:c.3952-1G>T		p.X1318_splice	ENST00000344626	NM_003072.3	1318																																													NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41537197	41537197	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	40	594	0	ENST00000263253.7:c.2024T>C	p.Met675Thr	p.M675T	ENST00000263253	NM_001429.3	675	aTg/aCg																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55151647	55151647	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	140	495	0	ENST00000257290.5:c.2438del	p.Asn813IlefsTer20	p.N813Ifs*20	ENST00000257290	NM_006206.4	811	tcA/tc																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103528057	103528058	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	145	347	0	ENST00000355739.4:c.3370dup	p.Thr1124AsnfsTer26	p.T1124Nfs*26	ENST00000355739	NM_000123.3	1122	cca/ccAa																																												NEWRECORD																																		
NOTCH1	4851	MSKCC	GRCh37	9	139390736	139390736	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	257	659	0	ENST00000277541.6:c.7455del	p.Ser2486ArgfsTer103	p.S2486Rfs*103	ENST00000277541	NM_017617.3	2485	ccC/cc																																												NEWRECORD																																		
ROS1	6098	MSKCC	GRCh37	6	117681119	117681120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs748436511		P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	158	566	0	ENST00000368508.3:c.3500dup	p.Leu1167PhefsTer26	p.L1167Ffs*26	ENST00000368508	NM_002944.2	1167	tta/ttTa																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411702	63411703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	204	356	0	ENST00000330258.3:c.1464dup	p.Leu489AlafsTer19	p.L489Afs*19	ENST00000330258	NM_152424.3	488	-/G																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43600551	43600551	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	74	614	1	ENST00000355710.3:c.778del	p.Val260Ter	p.V260*	ENST00000355710	NM_020975.4	259	ccG/cc																																												NEWRECORD																																		
ERBB4	2066	MSKCC	GRCh37	2	212989590	212989591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	92	492	0	ENST00000342788.4:c.119_120dup	p.Asp41LeufsTer26	p.D41Lfs*26	ENST00000342788	NM_005235.2	40	-/CT																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133209298	133209298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	206	593	0	ENST00000320574.5:c.6088delG	p.Ala2030ProfsTer18	p.A2030Pfs*18	ENST00000320574	NM_006231.2	2030	Gcc/cc																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241671931	241671931	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	201	452	1	ENST00000366560.3:c.710A>G	p.Gln237Arg	p.Q237R	ENST00000366560	NM_000143.3	237	cAg/cGg																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37619309	37619309	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	125	247	0	ENST00000447079.4:c.985C>T	p.Arg329Ter	p.R329*	ENST00000447079	NM_015083.1	329	Cga/Tga																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39916517	39916517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	448	351	1	ENST00000378444.4:c.4486G>A	p.Ala1496Thr	p.A1496T	ENST00000378444	NM_001123385.1	1496	Gca/Aca																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67671654	67671655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	202	371	1	ENST00000264010.4:c.2070dup	p.Glu691ArgfsTer5	p.E691Rfs*5	ENST00000264010	NM_006565.3	688	gta/gtAa																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627418	37627418	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	244	479	0	ENST00000447079.4:c.1337del	p.Lys446SerfsTer6	p.K446Sfs*6	ENST00000447079	NM_015083.1	445	Aaa/aa																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060571	38060574	+	stop_lost	Nonstop_Mutation	ONP	TAGG	TAGG	AAGA			P-0008235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	315	721	0	ENST00000250448.2:c.1415_1418delinsTCTT	p.Ser472_Ter473delinsPheLeu	p.S472_*473delinsFL	ENST00000250448	NM_004496.3	472	tCCTAg/tTCTTg																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128829039	128829040	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT			P-0008844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	20	18	0	ENST00000249373.3:c.67_69dupCTG	p.Leu23dup	p.L23dup	ENST00000249373	NM_005631.4	23	ggg/ggGCTg																																												NEWRECORD																																		
HIST2H3D	0	MSKCC	GRCh37	1	149784837	149784837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	100	450	0	ENST00000331491.1:c.400G>A	p.Glu134Lys	p.E134K	ENST00000331491	NM_001123375.2	134	Gag/Aag																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66781586	66781586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	140	449	0	ENST00000307102.5:c.994C>G	p.Leu332Val	p.L332V	ENST00000307102	NM_002755.3	332	Ctg/Gtg																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185198265	185198276	+	inframe_deletion	In_Frame_Del	DEL	TGAAGACTCAGA	TGAAGACTCAGA	-			P-0008844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	110	334	0	ENST00000265026.3:c.2749_2760delAAGACTCAGATG	p.Lys917_Met920del	p.K917_M920del	ENST00000265026	NM_004721.4	916	gTGAAGACTCAGAtg/gtg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380277	25380278	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0008844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	106	403	0	ENST00000256078.4:c.180_181delTCinsAA	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	60	ggTCaa/ggAAaa																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	241	296	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	443	469	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	249	147	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66727483	66727483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	195	343	0	ENST00000307102.5:c.199G>A	p.Asp67Asn	p.D67N	ENST00000307102	NM_002755.3	67	Gac/Aac																																												NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32907420	32907421	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1253401667		P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	371	248	0	ENST00000380152.3:c.1813dup	p.Ile605AsnfsTer11	p.I605Nfs*11	ENST00000380152		602	gga/ggAa																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88799200	88799200	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	71	535	2	ENST00000360948.2:c.185C>G	p.Ser62Ter	p.S62*	ENST00000360948	NM_001012338.2	62	tCa/tGa																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11141507	11141507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	236	522	0	ENST00000344626.4:c.3484G>T	p.Gly1162Cys	p.G1162C	ENST00000344626	NM_003072.3	1162	Ggc/Tgc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76855971	76855971	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014553-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	444	257	0	ENST00000373344.5:c.5629C>T	p.Gln1877Ter	p.Q1877*	ENST00000373344	NM_000489.3	1877	Cag/Tag																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101402	27101402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	346	354	0	ENST00000324856.7:c.4689del	p.Met1564Ter	p.M1564*	ENST00000324856	NM_006015.4	1562	Ccc/cc																																												NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	191	360	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																												NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	310	408	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	225	227	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																												NEWRECORD																																		
INPP4A	3631	MSKCC	GRCh37	2	99181109	99181109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs757028003		P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	253	353	0	ENST00000074304.5:c.2050G>A	p.Ala684Thr	p.A684T	ENST00000074304	NM_001134224.1	684	Gcc/Acc																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	162	240	0	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	61	456	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31024637	31024637	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	40	418	0	ENST00000375687.4:c.4127delG	p.Gly1376ValfsTer74	p.G1376Vfs*74	ENST00000375687	NM_015338.5	1374	gtG/gt																																												NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	198	372	7	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	124	356	2	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																												NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108114817	108114817	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs1388051413		P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	263	313	0	ENST00000278616.4:c.640del	p.Ser214ProfsTer16	p.S214Pfs*16	ENST00000278616	NM_000051.3	212	Ttt/tt																																												NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	29	356	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2223376	2223376	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	380	466	0	ENST00000398665.3:c.3492del	p.Val1165CysfsTer8	p.V1165Cfs*8	ENST00000398665	NM_032482.2	1163	Ccc/cc																																												NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151900081	151900081	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	74	259	0	ENST00000262189.6:c.4030del	p.Ile1344Ter	p.I1344*	ENST00000262189	NM_170606.2	1344	Ata/ta																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692980	89692980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	246	198	0	ENST00000371953.3:c.464A>G	p.Tyr155Cys	p.Y155C	ENST00000371953	NM_000314.4	155	tAt/tGt																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	34	264	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																												NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47422384	47422384	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	33	437	0	ENST00000377045.4:c.23del	p.Pro8LeufsTer26	p.P8Lfs*26	ENST00000377045	NM_001654.4	6	ggC/gg																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806181	1806181	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	309	415	1	ENST00000260795.2:c.1206delC	p.Lys403ArgfsTer29	p.K403Rfs*29	ENST00000260795		400	agC/ag																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47424734	47424734	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	241	508	0	ENST00000377045.4:c.547delC	p.Gln183ArgfsTer109	p.Q183Rfs*109	ENST00000377045	NM_001654.4	181	aCc/ac																																												NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	384	600	2	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31389203	31389203	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	330	419	0	ENST00000328111.2:c.2116G>A	p.Asp706Asn	p.D706N	ENST00000328111	NM_006892.3	706	Gac/Aac																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508995	106508995	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62001906		P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	166	296	1	ENST00000359195.3:c.989C>T	p.Thr330Met	p.T330M	ENST00000359195	NM_002649.2	330	aCg/aTg																																												NEWRECORD																																		
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	248	367	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11174404	11174404	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	34	411	0	ENST00000361445.4:c.7271A>C	p.Asp2424Ala	p.D2424A	ENST00000361445	NM_004958.3	2424	gAc/gCc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16261053	16261053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	284	370	0	ENST00000375759.3:c.8318G>A	p.Cys2773Tyr	p.C2773Y	ENST00000375759	NM_015001.2	2773	tGc/tAc																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46739809	46739809	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	354	405	0	ENST00000371975.4:c.1611-1G>T		p.X537_splice	ENST00000371975	NM_003579.3	537																																													NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46743772	46743772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	387	395	0	ENST00000371975.4:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000371975	NM_003579.3	688	Cgt/Tgt																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120506358	120506358	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	164	396	0	ENST00000256646.2:c.1754A>G	p.Gln585Arg	p.Q585R	ENST00000256646	NM_024408.3	585	cAg/cGg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156849069	156849069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	273	466	0	ENST00000524377.1:c.1961G>A	p.Arg654His	p.R654H	ENST00000524377	NM_002529.3	654	cGc/cAc																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193202124	193202124	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	40	287	0	ENST00000367435.3:c.1156T>C	p.Phe386Leu	p.F386L	ENST00000367435	NM_024529.4	386	Ttt/Ctt																																												NEWRECORD																																		
IL10	0	MSKCC	GRCh37	1	206943190	206943190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	91	314	0	ENST00000423557.1:c.428A>C	p.Lys143Thr	p.K143T	ENST00000423557	NM_000572.2	143	aAg/aCg																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25470995	25470995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	55	429	0	ENST00000264709.3:c.766C>T	p.Pro256Ser	p.P256S	ENST00000264709	NM_175629.2	256	Ccc/Tcc																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48026204	48026204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	315	388	0	ENST00000234420.5:c.1082G>A	p.Arg361His	p.R361H	ENST00000234420	NM_000179.2	361	cGc/cAc																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61145432	61145432	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	32	289	0	ENST00000295025.8:c.640+2T>C		p.X214_splice	ENST00000295025	NM_002908.2	214																																													NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61720166	61720166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	56	329	0	ENST00000401558.2:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000401558	NM_003400.3	423	cGa/cAa																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99169316	99169316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	279	509	0	ENST00000074304.5:c.1246G>A	p.Ala416Thr	p.A416T	ENST00000074304	NM_001134224.1	416	Gcc/Acc																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158636917	158636917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	369	476	2	ENST00000263640.3:c.263G>A	p.Gly88Asp	p.G88D	ENST00000263640	NM_001105.4	88	gGc/gAc																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190718809	190718809	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	28	185	0	ENST00000441310.2:c.966+1G>A		p.X322_splice	ENST00000441310	NM_000534.4	322																																													NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662442	227662442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	229	255	0	ENST00000305123.5:c.1013G>A	p.Arg338His	p.R338H	ENST00000305123	NM_005544.2	338	cGc/cAc																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37067255	37067255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	43	386	1	ENST00000231790.2:c.1166G>A	p.Arg389Gln	p.R389Q	ENST00000231790	NM_000249.3	389	cGg/cAg																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37090477	37090477	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	32	324	0	ENST00000231790.2:c.2072T>A	p.Ile691Lys	p.I691K	ENST00000231790	NM_000249.3	691	aTa/aAa																																												NEWRECORD																																		
MYD88	0	MSKCC	GRCh37	3	38182721	38182721	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	377	363	0	ENST00000396334.3:c.874C>A	p.Pro292Thr	p.P292T	ENST00000396334	NM_002468.4	292	Ccc/Acc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142226846	142226846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	237	382	0	ENST00000350721.4:c.4958G>A	p.Arg1653Gln	p.R1653Q	ENST00000350721	NM_001184.3	1653	cGa/cAa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	309	553	1	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185161351	185161351	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	47	453	0	ENST00000265026.3:c.778T>C	p.Ser260Pro	p.S260P	ENST00000265026	NM_004721.4	260	Tcc/Ccc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55564477	55564477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	63	326	0	ENST00000288135.5:c.365G>A	p.Arg122His	p.R122H	ENST00000288135	NM_000222.2	122	cGc/cAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177950	112177950	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	30	342	2	ENST00000257430.4:c.6659A>G	p.Asn2220Ser	p.N2220S	ENST00000257430	NM_000038.5	2220	aAc/aGc																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131915666	131915666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	39	390	0	ENST00000265335.6:c.664G>A	p.Glu222Lys	p.E222K	ENST00000265335		222	Gag/Aag																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176520328	176520328	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200070761		P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	251	379	0	ENST00000292408.4:c.1247G>A	p.Arg416Gln	p.R416Q	ENST00000292408	NM_213647.1	416	cGa/cAa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176687118	176687118	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	51	462	0	ENST00000439151.2:c.5095T>C	p.Cys1699Arg	p.C1699R	ENST00000439151	NM_022455.4	1699	Tgc/Cgc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180055910	180055910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	32	366	2	ENST00000261937.6:c.1075G>A	p.Ala359Thr	p.A359T	ENST00000261937	NM_182925.4	359	Gca/Aca																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099862	157099862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	299	360	2	ENST00000346085.5:c.799C>T	p.His267Tyr	p.H267Y	ENST00000346085	NM_020732.3	267	Cac/Tac																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128843227	128843227	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	211	379	0	ENST00000249373.3:c.334C>A	p.Leu112Ile	p.L112I	ENST00000249373	NM_005631.4	112	Ctc/Atc																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128845147	128845147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	41	433	2	ENST00000249373.3:c.641G>A	p.Gly214Asp	p.G214D	ENST00000249373	NM_005631.4	214	gGc/gAc																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93624519	93624519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	39	341	0	ENST00000375746.1:c.610G>A	p.Ala204Thr	p.A204T	ENST00000375746	NM_001174167.1	204	Gcc/Acc																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135777991	135777991	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	25	306	0	ENST00000298552.3:c.2391+1G>A		p.X797_splice	ENST00000298552	NM_001162426.1	797																																													NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139396844	139396844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	267	352	1	ENST00000277541.6:c.5264T>C	p.Leu1755Pro	p.L1755P	ENST00000277541	NM_017617.3	1755	cTg/cCg																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2161460	2161460	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	278	473	0	ENST00000434045.2:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000434045	NM_001127598.1	23	Caa/Taa																																												NEWRECORD																																		
LMO1	0	MSKCC	GRCh37	11	8246170	8246170	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	33	425	0	ENST00000335790.3:c.464T>C	p.Val155Ala	p.V155A	ENST00000335790	NM_002315.2	155	gTt/gCt																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64129139	64129139	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	35	367	0	ENST00000334205.4:c.677T>C	p.Ile226Thr	p.I226T	ENST00000334205	NM_003942.2	226	aTc/aCc																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100962586	100962586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	248	420	0	ENST00000325455.5:c.1811C>A	p.Ala604Asp	p.A604D	ENST00000325455	NM_001202474.3	604	gCt/gAt																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108236204	108236204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	73	384	1	ENST00000278616.4:c.9140G>A	p.Arg3047Gln	p.R3047Q	ENST00000278616	NM_000051.3	3047	cGa/cAa																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	418973	418973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	38	414	0	ENST00000399788.2:c.3374T>C	p.Met1125Thr	p.M1125T	ENST00000399788	NM_001042603.1	1125	aTg/aCg																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435214	18435214	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	232	383	0	ENST00000266497.5:c.199A>G	p.Thr67Ala	p.T67A	ENST00000266497		67	Act/Gct																																												NEWRECORD																																		
H3F3C	0	MSKCC	GRCh37	12	31945033	31945033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	37	484	1	ENST00000340398.3:c.68C>T	p.Thr23Met	p.T23M	ENST00000340398	NM_001013699.2	23	aCg/aTg																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21557537	21557537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	38	498	2	ENST00000382592.4:c.2308T>C	p.Phe770Leu	p.F770L	ENST00000382592	NM_014572.2	770	Ttc/Ctc																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21562748	21562748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	18	194	1	ENST00000382592.4:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000382592	NM_014572.2	391	Cgc/Tgc																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26959402	26959402	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	192	408	0	ENST00000381527.3:c.569T>C	p.Leu190Ser	p.L190S	ENST00000381527	NM_001260.1	190	tTg/tCg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28886236	28886236	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	172	288	0	ENST00000282397.4:c.3387-1G>A		p.X1129_splice	ENST00000282397	NM_002019.4	1129																																													NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95590950	95590950	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	259	204	1	ENST00000343455.3:c.959A>C	p.Lys320Thr	p.K320T	ENST00000343455	NM_177438.2	320	aAa/aCa																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95598915	95598915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	287	350	0	ENST00000343455.3:c.244T>C	p.Ser82Pro	p.S82P	ENST00000343455	NM_177438.2	82	Tcc/Ccc																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2134268	2134268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	337	456	0	ENST00000219476.3:c.4045G>T	p.Ala1349Ser	p.A1349S	ENST00000219476	NM_000548.3	1349	Gcg/Tcg																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67670755	67670755	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	280	350	0	ENST00000264010.4:c.1999+1G>A		p.X667_splice	ENST00000264010	NM_006565.3	667																																													NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821209	72821209	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	407	561	1	ENST00000268489.5:c.10966C>T	p.Pro3656Ser	p.P3656S	ENST00000268489	NM_006885.3	3656	Cca/Tca																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72829731	72829731	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	430	598	0	ENST00000268489.5:c.6850C>T	p.Arg2284Ter	p.R2284*	ENST00000268489	NM_006885.3	2284	Cga/Tga																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993848	72993848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	51	432	0	ENST00000268489.5:c.197C>T	p.Ala66Val	p.A66V	ENST00000268489	NM_006885.3	66	gCg/gTg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89347066	89347066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	361	540	0	ENST00000301030.4:c.5884C>A	p.Leu1962Met	p.L1962M	ENST00000301030	NM_001256183.1	1962	Ctg/Atg																																												NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8109923	8109923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	107	355	0	ENST00000585124.1:c.572G>A	p.Cys191Tyr	p.C191Y	ENST00000585124	NM_004217.3	191	tGc/tAc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15989690	15989690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	275	451	0	ENST00000268712.3:c.3083G>A	p.Arg1028Gln	p.R1028Q	ENST00000268712	NM_006311.3	1028	cGa/cAa																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17125921	17125921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	141	400	0	ENST00000285071.4:c.673G>A	p.Ala225Thr	p.A225T	ENST00000285071	NM_144997.5	225	Gcc/Acc																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38504571	38504571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	70	395	0	ENST00000254066.5:c.182T>C	p.Ile61Thr	p.I61T	ENST00000254066	NM_000964.3	61	aTt/aCt																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59821931	59821931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	206	359	2	ENST00000259008.2:c.2119C>T	p.Arg707Cys	p.R707C	ENST00000259008	NM_032043.2	707	Cgt/Tgt																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63545677	63545677	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs151247101		P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	297	512	1	ENST00000307078.5:c.917C>T	p.Ala306Val	p.A306V	ENST00000307078	NM_004655.3	306	gCg/gTg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78681725	78681725	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	303	420	1	ENST00000306801.3:c.433C>T	p.Arg145Ter	p.R145*	ENST00000306801	NM_020761.2	145	Cga/Tga																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78831689	78831689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	279	361	1	ENST00000306801.3:c.1498G>A	p.Ala500Thr	p.A500T	ENST00000306801	NM_020761.2	500	Gca/Aca																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78897330	78897330	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	31	391	1	ENST00000306801.3:c.2665A>G	p.Thr889Ala	p.T889A	ENST00000306801	NM_020761.2	889	Acc/Gcc																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	751768	751768	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	177	301	0	ENST00000314574.4:c.308A>G	p.Glu103Gly	p.E103G	ENST00000314574	NM_005433.3	103	gAa/gGa																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2222314	2222314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	49	377	0	ENST00000398665.3:c.3146T>C	p.Ile1049Thr	p.I1049T	ENST00000398665	NM_032482.2	1049	aTc/aCc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5246056	5246056	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	26	218	0	ENST00000357368.4:c.719T>C	p.Val240Ala	p.V240A	ENST00000357368	NM_002850.3	240	gTc/gCc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15295220	15295220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	327	494	0	ENST00000263388.2:c.2452G>A	p.Ala818Thr	p.A818T	ENST00000263388	NM_000435.2	818	Gca/Aca																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15349606	15349606	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	239	313	0	ENST00000263377.2:c.3968A>C	p.Gln1323Pro	p.Q1323P	ENST00000263377	NM_058243.2	1323	cAg/cCg																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18278073	18278073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	359	456	1	ENST00000222254.8:c.1693C>T	p.Pro565Ser	p.P565S	ENST00000222254	NM_005027.3	565	Ccg/Tcg																																												NEWRECORD																																		
BBC3	0	MSKCC	GRCh37	19	47731596	47731596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	64	81	1	ENST00000449228.1:c.196G>A	p.Ala66Thr	p.A66T	ENST00000449228	NM_001127240.2	66	Gcc/Acc																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50905324	50905324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	334	575	1	ENST00000440232.2:c.532G>T	p.Gly178Trp	p.G178W	ENST00000440232	NM_002691.3	178	Ggg/Tgg																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50910426	50910426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	39	513	0	ENST00000440232.2:c.1681C>T	p.Arg561Trp	p.R561W	ENST00000440232	NM_002691.3	561	Cgg/Tgg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52714631	52714631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	239	367	1	ENST00000322088.6:c.389C>T	p.Pro130Leu	p.P130L	ENST00000322088	NM_014225.5	130	cCg/cTg																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39741458	39741458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	321	418	1	ENST00000361337.2:c.1345C>T	p.Arg449Trp	p.R449W	ENST00000361337	NM_003286.2	449	Cgg/Tgg																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54945234	54945234	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	84	284	0	ENST00000312783.6:c.1192T>G	p.Ser398Ala	p.S398A	ENST00000312783	NM_198436.1	398	Tca/Gca																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29120988	29120988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	287	390	0	ENST00000328354.6:c.569C>T	p.Ala190Val	p.A190V	ENST00000328354	NM_007194.3	190	gCa/gTa																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53223571	53223571	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	149	283	0	ENST00000375401.3:c.3788T>C	p.Val1263Ala	p.V1263A	ENST00000375401	NM_004187.3	1263	gTa/gCa																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66937326	66937326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	139	460	0	ENST00000374690.3:c.2180G>A	p.Arg727His	p.R727H	ENST00000374690	NM_000044.3	727	cGc/cAc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70338675	70338675	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	245	423	0	ENST00000374080.3:c.71T>C	p.Val24Ala	p.V24A	ENST00000374080		24	gTt/gCt																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78429260	78429260	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	72	284	0	ENST00000370768.2:c.1182del	p.Gly395GlufsTer5	p.G395Efs*5	ENST00000370768	NM_003902.3	394	aaA/aa																																												NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	261	474	0	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																												NEWRECORD																																		
H3F3B	0	MSKCC	GRCh37	17	73774681	73774682	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	56	54	0	ENST00000254810.4:c.405_406delAG	p.Arg135SerfsTer12	p.R135Sfs*12	ENST00000254810	NM_005324.3	135	agAGct/agct																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27089746	27089755	+	frameshift_variant	Frame_Shift_Del	DEL	TGCATGTTGC	TGCATGTTGC	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	133	195	0	ENST00000324856.7:c.2705_2714del	p.His902ProfsTer14	p.H902Pfs*14	ENST00000324856	NM_006015.4	901	aTGCATGTTGCt/at																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49440431	49440431	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	105	358	0	ENST00000301067.7:c.4379delC	p.Pro1460HisfsTer46	p.P1460Hfs*46	ENST00000301067	NM_003482.3	1460	cCa/ca																																												NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436227	110436227	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1394911868		P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	13	192	0	ENST00000375856.3:c.2174del	p.Gly725AlafsTer102	p.G725Afs*102	ENST00000375856	NM_003749.2	725	gGc/gc																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	296	366	2	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2134568	2134569	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	47	379	1	ENST00000219476.3:c.4351dup	p.Arg1451ProfsTer73	p.R1451Pfs*73	ENST00000219476	NM_000548.3	1449	tcc/tCcc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32972356	32972356	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	57	284	0	ENST00000380152.3:c.9709del	p.Arg3237GlyfsTer12	p.R3237Gfs*12	ENST00000380152		3236	Aaa/aa																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435986	56435986	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	214	282	0	ENST00000407977.2:c.1151del	p.Gly384AlafsTer35	p.G384Afs*35	ENST00000407977		384	gGc/gc																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061080	38061080	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	12	97	0	ENST00000250448.2:c.909del	p.Ser304AlafsTer17	p.S304Afs*17	ENST00000250448	NM_004496.3	303	ccC/cc																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294530	1294532	+	missense_variant	Missense_Mutation	ONP	CGC	CGC	TGT			P-0005564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	43	191	0	ENST00000310581.5:c.469_471delinsACA	p.Ala157Thr	p.A157T	ENST00000310581	NM_198253.2	157	GCG/ACA																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	142	381	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108196896	108196896	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	155	348	0	ENST00000278616.4:c.6919C>G	p.Leu2307Val	p.L2307V	ENST00000278616	NM_000051.3	2307	Ctt/Gtt																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89833629	89833629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	145	389	0	ENST00000389301.3:c.2521A>G	p.Ile841Val	p.I841V	ENST00000389301	NM_000135.2	841	Att/Gtt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576653	7576982	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTCCTTTAAAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCT	TGGTCCTTTAAAATATATATTATGGTATAAGTTGGTGTTCTGAAGTTAGTTAGCTACAACCAGGAGCCATTGTCTTTGAGGCATCACTGCCCCCTGATGGCAAATGCCCCAATTGCAGGTAAAACAGTCAAGAAGAAAACGGCATTTTGAGTGTTAGACTGGAAACTTTCCACTTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCT	-			P-0014800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	72	356	0	ENST00000269305.4:c.919+37_993+200del		p.X307_splice	ENST00000269305	NM_001126112.2	307																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576868	7576886	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTCCATCCAGTGGTTTC	TTCTCCATCCAGTGGTTTC	-			P-0014800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	103	587	0	ENST00000269305.4:c.960_978delGAAACCACTGGATGGAGAA	p.Lys320AsnfsTer19	p.K320Nfs*19	ENST00000269305	NM_001126112.2	320	aaGAAACCACTGGATGGAGAA/aa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	38	530	0	ENST00000269305.4:c.716A>C	p.Asn239Thr	p.N239T	ENST00000269305	NM_001126112.2	239	aAc/aCc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56437521	56437522	+	stop_gained	Nonsense_Mutation	INS	-	-	ACATGCATT			P-0014800-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	151	623	0	ENST00000407977.2:c.940_941insAATGCATGT	p.Met313_Phe314insTer	p.M313_F314ins*	ENST00000407977		314	ttc/tAATGCATGTtc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000300-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			747	101	477	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39913252	39913253	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs797044647		P-0000300-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1113	71	737	0	ENST00000378444.4:c.4862dup	p.Gly1622ArgfsTer7	p.G1622Rfs*7	ENST00000378444	NM_001123385.1	1621	cca/ccCa																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593656	55593657	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAACTT			P-0014678-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	231	502	0	ENST00000288135.5:c.1724_1729dup	p.Gln575_Leu576dup	p.Q575_L576dup	ENST00000288135	NM_000222.2	575	-/CAACTT																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0006901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	167	323	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																												NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913514		P-0006901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	202	315	0	ENST00000288135.5:c.2466T>A	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaA																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	147	258	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001631-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			204	204	206	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001631-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			374	388	374	0	ENST00000263967.3:c.3127A>T	p.Met1043Leu	p.M1043L	ENST00000263967	NM_006218.2	1043	Atg/Ttg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151845412	151845412	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001631-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			699	466	343	0	ENST00000262189.6:c.13600C>T	p.Gln4534Ter	p.Q4534*	ENST00000262189	NM_170606.2	4534	Cag/Tag																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68849662	68849663	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	GT			P-0001631-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			244	447	313	0	ENST00000261769.5:c.1565+1_1565+2dup		p.T522fs	ENST00000261769	NM_004360.3	522	aca/acGTa																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32187982	32187982	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001631-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	213	439	0	ENST00000375023.3:c.1239del	p.Gly414AlafsTer24	p.G414Afs*24	ENST00000375023	NM_004557.3	413	acA/ac																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	223	321	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	542	467	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121434367	121434367	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	222	437	1	ENST00000257555.6:c.1136del	p.Pro379LeufsTer5	p.P379Lfs*5	ENST00000257555		377	ctC/ct																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294175	1294175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	40	269	0	ENST00000310581.5:c.826G>A	p.Ala276Thr	p.A276T	ENST00000310581	NM_198253.2	276	Gcc/Acc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057936	27057937	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	236	364	0	ENST00000324856.7:c.1650dupC	p.Tyr551LeufsTer72	p.Y551Lfs*72	ENST00000324856	NM_006015.4	548	-/C																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	294	496	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258817	16258817	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	264	395	0	ENST00000375759.3:c.6082A>G	p.Met2028Val	p.M2028V	ENST00000375759	NM_015001.2	2028	Atg/Gtg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023390	27023390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	215	271	2	ENST00000324856.7:c.496G>A	p.Ala166Thr	p.A166T	ENST00000324856	NM_006015.4	166	Gcc/Acc																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99154355	99154355	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	208	365	0	ENST00000074304.5:c.497T>C	p.Ile166Thr	p.I166T	ENST00000074304	NM_001134224.1	166	aTc/aCc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30648416	30648416	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	246	302	0	ENST00000359013.4:c.41T>C	p.Ile14Thr	p.I14T	ENST00000359013	NM_001024847.2	14	aTc/aCc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178947865	178947865	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	373	530	0	ENST00000263967.3:c.2740G>C	p.Gly914Arg	p.G914R	ENST00000263967	NM_006218.2	914	Gga/Cga																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185190891	185190891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			685	348	552	2	ENST00000265026.3:c.1772G>A	p.Arg591His	p.R591H	ENST00000265026	NM_004721.4	591	cGc/cAc																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876264	35876264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	264	409	1	ENST00000303115.3:c.1056G>T	p.Glu352Asp	p.E352D	ENST00000303115	NM_002185.3	352	gaG/gaT																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98244261	98244261	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	316	607	0	ENST00000331920.6:c.716C>T	p.Ala239Val	p.A239V	ENST00000331920	NM_000264.3	239	gCg/gTg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108218092	108218092	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	225	308	0	ENST00000278616.4:c.8671G>A	p.Gly2891Ser	p.G2891S	ENST00000278616	NM_000051.3	2891	Ggt/Agt																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29012380	29012380	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			649	265	514	0	ENST00000282397.4:c.491A>T	p.Asn164Ile	p.N164I	ENST00000282397	NM_002019.4	164	aAc/aTc																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81563048	81563048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	312	483	0	ENST00000298171.2:c.611C>T	p.Ala204Val	p.A204V	ENST00000298171	NM_000369.2	204	gCt/gTt																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67645384	67645384	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	236	407	0	ENST00000264010.4:c.649G>T	p.Glu217Ter	p.E217*	ENST00000264010	NM_006565.3	217	Gag/Tag																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78831603	78831603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	211	420	0	ENST00000306801.3:c.1412G>A	p.Gly471Asp	p.G471D	ENST00000306801	NM_020761.2	471	gGc/gAc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15350217	15350217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			863	102	518	0	ENST00000263377.2:c.3562G>T	p.Val1188Phe	p.V1188F	ENST00000263377	NM_058243.2	1188	Gtt/Ttt																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42791721	42791721	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	266	419	0	ENST00000575354.2:c.607C>G	p.Pro203Ala	p.P203A	ENST00000575354	NM_015125.3	203	Ccc/Gcc																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39775625	39775625	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140222241		P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	181	277	0	ENST00000288319.7:c.395C>T	p.Thr132Met	p.T132M	ENST00000288319	NM_182918.3	132	aCg/aTg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70343005	70343005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	243	489	0	ENST00000374080.3:c.1546C>T	p.Arg516Cys	p.R516C	ENST00000374080		516	Cgt/Tgt																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100611219	100611219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	234	415	1	ENST00000308731.7:c.1387G>A	p.Val463Ile	p.V463I	ENST00000308731	NM_000061.2	463	Gtc/Atc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29456453	29456453	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			746	335	574	0	ENST00000389048.3:c.2465del	p.Gly822ValfsTer9	p.G822Vfs*9	ENST00000389048	NM_004304.4	822	gGt/gt																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553281	106553281	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	294	427	0	ENST00000369096.4:c.1251del	p.Tyr418ThrfsTer3	p.Y418Tfs*3	ENST00000369096	NM_001198.3	416	Ccc/cc																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1039278	1039281	+	frameshift_variant	Frame_Shift_Del	DEL	ATTA	ATTA	-			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			686	278	603	0	ENST00000358495.3:c.216_219del	p.Asn73TrpfsTer38	p.N73Wfs*38	ENST00000358495	NM_134424.2	72	atTAAT/at																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49443667	49443667	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1364500207		P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			589	219	412	1	ENST00000301067.7:c.3704del	p.Gly1235ValfsTer95	p.G1235Vfs*95	ENST00000301067	NM_003482.3	1235	gGt/gt																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31375193	31375194	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	223	392	0	ENST00000328111.2:c.596dup	p.Met200HisfsTer89	p.M200Hfs*89	ENST00000328111	NM_006892.3	197	cag/caGg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106696	27106696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002280-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	281	440	1	ENST00000324856.7:c.6310del	p.Ser2104ProfsTer31	p.S2104Pfs*31	ENST00000324856	NM_006015.4	2103	Ttt/tt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	180	388	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	247	570	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72400905	72400905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	114	730	2	ENST00000357731.5:c.266C>A	p.Pro89His	p.P89H	ENST00000357731	NM_173808.2	89	cCt/cAt																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25462022	25462022	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	241	492	0	ENST00000264709.3:c.2385G>T	p.Trp795Cys	p.W795C	ENST00000264709	NM_175629.2	795	tgG/tgT																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89499520	89499520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	138	291	0	ENST00000336596.2:c.2690G>T	p.Arg897Met	p.R897M	ENST00000336596	NM_005233.5	897	aGg/aTg																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153249460	153249460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	100	452	0	ENST00000281708.4:c.1318G>A	p.Asp440Asn	p.D440N	ENST00000281708	NM_033632.3	440	Gat/Aat																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149499656	149499656	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	97	559	1	ENST00000261799.4:c.2617G>T	p.Glu873Ter	p.E873*	ENST00000261799	NM_002609.3	873	Gag/Tag																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180052917	180052917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	196	495	0	ENST00000261937.6:c.1373G>T	p.Trp458Leu	p.W458L	ENST00000261937	NM_182925.4	458	tGg/tTg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32188861	32188861	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	187	462	0	ENST00000375023.3:c.693T>G	p.Cys231Trp	p.C231W	ENST00000375023	NM_004557.3	231	tgT/tgG																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138200101	138200101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	176	267	0	ENST00000237289.4:c.1519A>T	p.Ser507Cys	p.S507C	ENST00000237289	NM_001270507.1	507	Agc/Tgc																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140454014	140454014	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs139510971		P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	122	394	0	ENST00000288602.6:c.1714A>T	p.Ile572Phe	p.I572F	ENST00000288602	NM_004333.4	572	Atc/Ttc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8500882	8500882	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191877533		P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	104	439	0	ENST00000356435.5:c.2000C>T	p.Ser667Leu	p.S667L	ENST00000356435		667	tCg/tTg																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87570239	87570239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	142	308	0	ENST00000277120.3:c.1979C>G	p.Pro660Arg	p.P660R	ENST00000277120		660	cCg/cGg																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101911521	101911521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	188	497	0	ENST00000374994.4:c.1446G>T	p.Arg482Ser	p.R482S	ENST00000374994	NM_004612.2	482	agG/agT																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18656255	18656255	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	169	527	0	ENST00000266497.5:c.2934G>C	p.Lys978Asn	p.K978N	ENST00000266497		978	aaG/aaC																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63534359	63534359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	63	436	0	ENST00000307078.5:c.1162C>T	p.Arg388Cys	p.R388C	ENST00000307078	NM_004655.3	388	Cgc/Tgc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40735521	40735521	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	231	456	0	ENST00000373198.4:c.3352A>G	p.Thr1118Ala	p.T1118A	ENST00000373198	NM_133170.3	1118	Acc/Gcc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40979268	40979268	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	71	402	0	ENST00000373198.4:c.1865G>C	p.Ser622Thr	p.S622T	ENST00000373198	NM_133170.3	622	aGt/aCt																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70360689	70360689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	41	44	0	ENST00000374080.3:c.6249G>T	p.Gln2083His	p.Q2083H	ENST00000374080		2083	caG/caT																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45864800	45864801	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	166	648	0	ENST00000391945.4:c.1218dup	p.Val407CysfsTer16	p.V407Cfs*16	ENST00000391945	NM_000400.3	406	-/T																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123353328	123353329	+	start_lost	Translation_Start_Site	DNP	CC	CC	AA			P-0006046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	237	484	0	ENST00000358487.5:c.3_4delinsTT	p.MetVal1_?2	p.MV1_?2	ENST00000358487	NM_000141.4	1	atGGtc/atTTtc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0006075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	238	470	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0006075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	135	328	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	295	694	1	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																												NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69625165	69625165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	103	503	0	ENST00000334134.2:c.628C>T	p.Arg210Trp	p.R210W	ENST00000334134	NM_005247.2	210	Cgg/Tgg																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114711367	114711368	+	splice_donor_variant	Splice_Site	INS	-	-	T			P-0006075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	103	231	0	ENST00000543371.1:c.381+2dup		p.X127_splice	ENST00000543371	NM_001198531.1	127																																													NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	135	329	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101891350	101891350	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	115	340	0	ENST00000374994.4:c.311A>T	p.Asp104Val	p.D104V	ENST00000374994	NM_004612.2	104	gAc/gTc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643802	52643803	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAAA			P-0007510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	116	359	0	ENST00000394830.3:c.2093_2094insTTTTT	p.Thr699PhefsTer2	p.T699Ffs*2	ENST00000394830	NM_018313.4	698	ctg/ctTTTTTg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0006282-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			676	53	248	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52676018	52676027	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTAATTGC	TTGTAATTGC	-			P-0006282-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			248	101	404	0	ENST00000394830.3:c.1030_1039del	p.Ala344TrpfsTer15	p.A344Wfs*15	ENST00000394830	NM_018313.4	344	GCAATTACAAtg/tg																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183858	10183859	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0006282-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			164	92	161	0	ENST00000256474.2:c.330_331dupCA	p.Ser111ThrfsTer49	p.S111Tfs*49	ENST00000256474	NM_000551.3	109	-/CA																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225379426	225379426	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	107	730	0	ENST00000264414.4:c.442C>T	p.Arg148Ter	p.R148*	ENST00000264414	NM_003590.4	148	Cga/Tga																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11276273	11276273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	107	629	1	ENST00000361445.4:c.3049G>A	p.Gly1017Arg	p.G1017R	ENST00000361445	NM_004958.3	1017	Gga/Aga																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139399790	139399790	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	81	529	0	ENST00000277541.6:c.4558G>C	p.Asp1520His	p.D1520H	ENST00000277541	NM_017617.3	1520	Gac/Cac																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241669354	241669355	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	217	635	0	ENST00000366560.3:c.852dup	p.Thr285TyrfsTer2	p.T285Yfs*2	ENST00000366560	NM_000143.3	284	-/T																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53230765	53230765	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	153	413	0	ENST00000375401.3:c.2028del	p.Glu677SerfsTer87	p.E677Sfs*87	ENST00000375401	NM_004187.3	676	gaA/ga																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16261047	16261048	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	95	446	1	ENST00000375759.3:c.8315dup	p.Cys2773ValfsTer8	p.C2773Vfs*8	ENST00000375759	NM_015001.2	2771	aca/acAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578280	7578281	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0013498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	374	692	1	ENST00000269305.4:c.568_569delinsT	p.Pro190PhefsTer57	p.P190Ffs*57	ENST00000269305	NM_001126112.2	190	CCt/Tt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	169	279	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	355	279	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	177	298	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	184	220	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371968	55371968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	83	125	0	ENST00000297316.4:c.658C>A	p.Pro220Thr	p.P220T	ENST00000297316	NM_022454.3	220	Ccc/Acc																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114910882	114910882	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	607	606	1	ENST00000543371.1:c.1001C>A	p.Ser334Ter	p.S334*	ENST00000543371	NM_001198531.1	334	tCa/tAa																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39795422	39795422	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140580933		P-0009363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	343	386	0	ENST00000288319.7:c.298G>A	p.Val100Ile	p.V100I	ENST00000288319	NM_182918.3	100	Gtt/Att																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106915	27106915	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	174	143	0	ENST00000324856.7:c.6526C>T	p.Gln2176Ter	p.Q2176*	ENST00000324856	NM_006015.4	2176	Cag/Tag																																												NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	136	158	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652029	36652029	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	142	177	0	ENST00000244741.5:c.151T>G	p.Phe51Val	p.F51V	ENST00000244741	NM_000389.4	51	Ttc/Gtc																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39629525	39629525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	96	263	0	ENST00000262039.4:c.2219G>T	p.Gly740Val	p.G740V	ENST00000262039	NM_002647.2	740	gGa/gTa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151846179	151846180	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAAATGCTTTGGAAGGCGTTTCTCTC			P-0003911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	111	172	0	ENST00000262189.6:c.12807_12832dup	p.His4278ArgfsTer57	p.H4278Rfs*57	ENST00000262189	NM_170606.2	4278	cat/cGAGAGAAACGCCTTCCAAAGCATTTCat																																												NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	91	454	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																												NEWRECORD																																		
BCL10	0	MSKCC	GRCh37	1	85733545	85733545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	82	763	0	ENST00000370580.1:c.467C>T	p.Pro156Leu	p.P156L	ENST00000370580	NM_003921.4	156	cCa/cTa																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662350	227662350	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	47	386	0	ENST00000305123.5:c.1105C>T	p.Leu369Phe	p.L369F	ENST00000305123	NM_005544.2	369	Ctc/Ttc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244349	46244349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	43	459	0	ENST00000334344.6:c.2443G>T	p.Val815Phe	p.V815F	ENST00000334344	NM_152641.2	815	Gtt/Ttt																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2223195	2223195	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	57	422	0	ENST00000326181.6:c.807C>G	p.Ile269Met	p.I269M	ENST00000326181	NM_032271.2	269	atC/atG																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9916124	9916124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	23	375	0	ENST00000330684.3:c.2165C>T	p.Thr722Met	p.T722M	ENST00000330684	NM_001134407.1	722	aCg/aTg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15271527	15271527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	69	578	0	ENST00000263388.2:c.6912G>T	p.Gln2304His	p.Q2304H	ENST00000263388	NM_000435.2	2304	caG/caT																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0012811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	85	558	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128028956	128028956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	51	548	0	ENST00000285398.2:c.1901G>A	p.Arg634His	p.R634H	ENST00000285398	NM_000122.1	634	cGt/cAt																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11134277	11134277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	28	493	0	ENST00000344626.4:c.2943G>T	p.Lys981Asn	p.K981N	ENST00000344626	NM_003072.3	981	aaG/aaT																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11170525	11170525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	28	417	1	ENST00000344626.4:c.4732G>T	p.Glu1578Ter	p.E1578*	ENST00000344626	NM_003072.3	1578	Gag/Tag																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103518257	103518258	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	51	296	0	ENST00000355739.4:c.2198dup	p.Leu733PhefsTer69	p.L733Ffs*69	ENST00000355739	NM_000123.3	732	aat/aaTt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0014302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	567	794	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100358	27100359	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0014302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	484	712	0	ENST00000324856.7:c.4070_4071insCT	p.Gln1357HisfsTer125	p.Q1357Hfs*125	ENST00000324856	NM_006015.4	1357	cag/caCTg																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	396582	396582	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	440	665	0	ENST00000262320.3:c.444C>G	p.Tyr148Ter	p.Y148*	ENST00000262320	NM_003502.3	148	taC/taG																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	384	512	0	ENST00000342988.3:c.1052A>G	p.Asp351Gly	p.D351G	ENST00000342988	NM_005359.5	351	gAt/gGt																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5211749	5211749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	401	725	0	ENST00000357368.4:c.5086C>T	p.Arg1696Cys	p.R1696C	ENST00000357368	NM_002850.3	1696	Cgc/Tgc																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10260194	10260194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	524	690	1	ENST00000340748.4:c.2473C>T	p.Leu825Phe	p.L825F	ENST00000340748		825	Ctt/Ttt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176011	112176011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	258	416	0	ENST00000257430.4:c.4720A>G	p.Ile1574Val	p.I1574V	ENST00000257430	NM_000038.5	1574	Ata/Gta																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93979230	93979230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014302-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	110	479	0	ENST00000369303.4:c.1598C>G	p.Ala533Gly	p.A533G	ENST00000369303	NM_004440.3	533	gCt/gGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	132	298	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	65	128	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	65	128	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	65	128	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157100414	157100414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	10	52	0	ENST00000346085.5:c.1351T>C	p.Ser451Pro	p.S451P	ENST00000346085	NM_020732.3	451	Tcg/Ccg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106159	27106159	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	81	226	0	ENST00000324856.7:c.5770G>T	p.Glu1924Ter	p.E1924*	ENST00000324856	NM_006015.4	1924	Gag/Tag																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134898738	134898738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	69	501	0	ENST00000398015.3:c.1796C>A	p.Thr599Asn	p.T599N	ENST00000398015	NM_004441.4	599	aCt/aAt																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66280144	66280144	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	67	230	0	ENST00000273854.3:c.1545C>A	p.Tyr515Ter	p.Y515*	ENST00000273854	NM_004439.5	515	taC/taA																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114901047	114901047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	125	641	1	ENST00000543371.1:c.657C>A	p.His219Gln	p.H219Q	ENST00000543371	NM_001198531.1	219	caC/caA																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18641473	18641473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	63	364	0	ENST00000266497.5:c.2472G>C	p.Leu824Phe	p.L824F	ENST00000266497		824	ttG/ttC																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57858905	57858905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	227	645	0	ENST00000228682.2:c.401G>C	p.Gly134Ala	p.G134A	ENST00000228682	NM_005269.2	134	gGa/gCa																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26959346	26959346	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	45	212	0	ENST00000381527.3:c.515-2A>T		p.X172_splice	ENST00000381527	NM_001260.1	172																																													NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134313	41134313	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs146471778		P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	195	705	0	ENST00000379561.5:c.1315A>G	p.Ile439Val	p.I439V	ENST00000379561	NM_002015.3	439	Ata/Gta																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9862891	9862891	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	70	339	0	ENST00000330684.3:c.2412G>C	p.Lys804Asn	p.K804N	ENST00000330684	NM_001134407.1	804	aaG/aaC																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81946314	81946314	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	184	495	0	ENST00000359376.3:c.2047A>G	p.Thr683Ala	p.T683A	ENST00000359376	NM_002661.3	683	Acc/Gcc																																												NEWRECORD																																		
RAD51D	0	MSKCC	GRCh37	17	33428242	33428242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	118	335	0	ENST00000335858.7:c.545G>A	p.Cys182Tyr	p.C182Y	ENST00000335858	NM_133629.2	182	tGt/tAt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604743	48604743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	91	344	0	ENST00000342988.3:c.1565C>G	p.Pro522Arg	p.P522R	ENST00000342988	NM_005359.5	522	cCt/cGt																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2222166	2222166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	163	369	0	ENST00000398665.3:c.2998G>T	p.Ala1000Ser	p.A1000S	ENST00000398665	NM_032482.2	1000	Gcc/Tcc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40790156	40790156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	14	143	0	ENST00000373198.4:c.2575C>A	p.Gln859Lys	p.Q859K	ENST00000373198	NM_133170.3	859	Cag/Aag																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41554503	41554503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	120	307	0	ENST00000263253.7:c.3589A>T	p.Arg1197Trp	p.R1197W	ENST00000263253	NM_001429.3	1197	Agg/Tgg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76889095	76889095	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	141	258	0	ENST00000373344.5:c.4915G>T	p.Glu1639Ter	p.E1639*	ENST00000373344	NM_000489.3	1639	Gag/Tag																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40790110	40790110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	29	221	0	ENST00000373198.4:c.2621del	p.Pro874LeufsTer4	p.P874Lfs*4	ENST00000373198	NM_133170.3	874	cCt/ct																																												NEWRECORD																																		
NFKBIA	0	MSKCC	GRCh37	14	35872546	35872547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	161	490	1	ENST00000216797.5:c.356dup	p.Ile120AspfsTer9	p.I120Dfs*9	ENST00000216797	NM_020529.2	119	gtg/gtTg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32183097	32183098	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	265	468	0	ENST00000375023.3:c.1926_1927delinsAA	p.Asp642_Gln643delinsGluLys	p.D642_Q643delinsEK	ENST00000375023	NM_004557.3	642	gaCCag/gaAAag																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11141534	11141536	+	missense_variant	Missense_Mutation	ONP	GTG	GTG	TTT			P-0009614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	134	359	1	ENST00000344626.4:c.3511_3513delinsTTT	p.Val1171Phe	p.V1171F	ENST00000344626	NM_003072.3	1171	GTG/TTT																																												NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78429978	78429978	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	139	233	0	ENST00000370768.2:c.901del	p.Ile301TyrfsTer22	p.I301Yfs*22	ENST00000370768	NM_003902.3	301	Ata/ta																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	130	240	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	131	309	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	173	288	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103510737	103510737	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146833751		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	119	276	0	ENST00000355739.4:c.641G>A	p.Arg214His	p.R214H	ENST00000355739	NM_000123.3	214	cGc/cAc																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156841505	156841505	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145222195		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	216	315	0	ENST00000524377.1:c.808G>A	p.Asp270Asn	p.D270N	ENST00000524377	NM_002529.3	270	Gat/Aat																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	223	385	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	146	290	1	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	165	253	0	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	152	313	0	ENST00000241453.7:c.2955_2956delTC	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																												NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	128	225	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78936354	78936354	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	142	325	0	ENST00000306801.3:c.3790delC	p.Gln1264ArgfsTer4	p.Q1264Rfs*4	ENST00000306801	NM_020761.2	1262	caC/ca																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	79	188	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																												NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	163	263	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																												NEWRECORD																																		
SMARCA4	6597	MSKCC	GRCh37	19	11097624	11097625	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1165714406		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	187	415	0	ENST00000344626.4:c.810dup	p.Gly271ArgfsTer16	p.G271Rfs*16	ENST00000344626	NM_003072.3	268	-/C																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11317105	11317105	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	181	360	1	ENST00000361445.4:c.389T>C	p.Ile130Thr	p.I130T	ENST00000361445	NM_004958.3	130	aTt/aCt																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713403	30713403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	32	208	0	ENST00000359013.4:c.803C>A	p.Pro268His	p.P268H	ENST00000359013	NM_001024847.2	268	cCc/cAc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52620541	52620541	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141958485		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	233	316	0	ENST00000394830.3:c.3212G>A	p.Arg1071His	p.R1071H	ENST00000394830	NM_018313.4	1071	cGc/cAc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55575646	55575646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	189	343	0	ENST00000288135.5:c.1172C>T	p.Thr391Ile	p.T391I	ENST00000288135	NM_000222.2	391	aCa/aTa																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106197564	106197564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	201	343	1	ENST00000380013.4:c.5897G>A	p.Arg1966His	p.R1966H	ENST00000380013	NM_001127208.2	1966	cGt/cAt																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131951787	131951787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	158	243	0	ENST00000265335.6:c.3129G>T	p.Lys1043Asn	p.K1043N	ENST00000265335		1043	aaG/aaT																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93979193	93979193	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	178	363	0	ENST00000369303.4:c.1633+2T>C		p.X545_splice	ENST00000369303	NM_004440.3	545																																													NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94129026	94129026	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	279	454	0	ENST00000369303.4:c.34A>G	p.Ile12Val	p.I12V	ENST00000369303	NM_004440.3	12	Att/Gtt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55272947	55272947	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	93	177	0	ENST00000275493.2:c.3272-2A>G		p.X1091_splice	ENST00000275493	NM_005228.3	1091																																													NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145738714	145738714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	148	229	2	ENST00000428558.2:c.2350C>T	p.Arg784Trp	p.R784W	ENST00000428558	NM_004260.3	784	Cgg/Tgg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139395186	139395186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	187	344	2	ENST00000277541.6:c.5752G>A	p.Ala1918Thr	p.A1918T	ENST00000277541	NM_017617.3	1918	Gcc/Acc																																												NEWRECORD																																		
SDHD	0	MSKCC	GRCh37	11	111959722	111959722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	130	167	0	ENST00000375549.3:c.301C>G	p.Leu101Val	p.L101V	ENST00000375549	NM_003002.3	101	Ctt/Gtt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118307462	118307462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	94	198	0	ENST00000534358.1:c.235G>A	p.Ala79Thr	p.A79T	ENST00000534358	NM_005933.3	79	Gcc/Acc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49416073	49416073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	277	429	0	ENST00000301067.7:c.16402G>A	p.Gly5468Ser	p.G5468S	ENST00000301067	NM_003482.3	5468	Ggc/Agc																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111885931	111885931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	290	428	0	ENST00000341259.2:c.1553G>A	p.Arg518Gln	p.R518Q	ENST00000341259	NM_005475.2	518	cGa/cAa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32907510	32907510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	145	186	1	ENST00000380152.3:c.1895C>A	p.Ala632Glu	p.A632E	ENST00000380152		632	gCa/gAa																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36986997	36986997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	124	260	0	ENST00000354822.5:c.692C>T	p.Thr231Met	p.T231M	ENST00000354822	NM_001079668.2	231	aCg/aTg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42058610	42058610	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	279	578	0	ENST00000219905.7:c.8330A>G	p.Lys2777Arg	p.K2777R	ENST00000219905	NM_001164273.1	2777	aAa/aGa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830204	72830204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	217	475	0	ENST00000268489.5:c.6377C>A	p.Ala2126Glu	p.A2126E	ENST00000268489	NM_006885.3	2126	gCg/gAg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831344	72831344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	215	429	0	ENST00000268489.5:c.5237C>T	p.Ala1746Val	p.A1746V	ENST00000268489	NM_006885.3	1746	gCc/gTc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15961337	15961337	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	189	307	1	ENST00000268712.3:c.6052C>T	p.Arg2018Ter	p.R2018*	ENST00000268712	NM_006311.3	2018	Cga/Tga																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15964862	15964862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	224	364	0	ENST00000268712.3:c.5734A>G	p.Lys1912Glu	p.K1912E	ENST00000268712	NM_006311.3	1912	Aaa/Gaa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29552112	29552112	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	83	186	0	ENST00000358273.4:c.1846-1G>A		p.X616_splice	ENST00000358273	NM_001042492.2	616																																													NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7117401	7117401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	174	290	0	ENST00000302850.5:c.3815G>A	p.Cys1272Tyr	p.C1272Y	ENST00000302850	NM_000208.2	1272	tGc/tAc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11138627	11138627	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	159	205	0	ENST00000344626.4:c.3382+1G>T		p.X1128_splice	ENST00000344626	NM_003072.3	1128																																													NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15272244	15272244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	13	173	0	ENST00000263388.2:c.6195G>C	p.Arg2065Ser	p.R2065S	ENST00000263388	NM_000435.2	2065	agG/agC																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41758265	41758265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	193	331	0	ENST00000301178.4:c.1721G>A	p.Cys574Tyr	p.C574Y	ENST00000301178	NM_021913.4	574	tGc/tAc																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31023957	31023957	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139435094		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	93	318	0	ENST00000375687.4:c.3442C>T	p.Arg1148Cys	p.R1148C	ENST00000375687	NM_015338.5	1148	Cgc/Tgc																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31375171	31375171	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140395707		P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	184	368	0	ENST00000328111.2:c.568C>T	p.Arg190Cys	p.R190C	ENST00000328111	NM_006892.3	190	Cgc/Tgc																																												NEWRECORD																																		
ICOSLG	0	MSKCC	GRCh37	21	45655425	45655425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	141	252	0	ENST00000407780.3:c.427G>A	p.Val143Ile	p.V143I	ENST00000407780	NM_001283052.1	143	Gtc/Atc																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411486	63411486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	194	450	0	ENST00000330258.3:c.1681C>A	p.Leu561Ile	p.L561I	ENST00000330258	NM_152424.3	561	Cta/Ata																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151859851	151859851	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	109	255	0	ENST00000262189.6:c.10811del	p.Lys3604ArgfsTer26	p.K3604Rfs*26	ENST00000262189	NM_170606.2	3604	aAg/ag																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52623186	52623187	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	105	318	0	ENST00000394830.3:c.2864dup	p.Asn955LysfsTer27	p.N955Kfs*27	ENST00000394830	NM_018313.4	955	aac/aaAc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49435198	49435199	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	33	122	0	ENST00000301067.7:c.6354dupC	p.Ala2119ArgfsTer36	p.A2119Rfs*36	ENST00000301067	NM_003482.3	2118	-/C																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89350331	89350332	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	149	559	0	ENST00000301030.4:c.2618_2619del	p.Val873GlyfsTer42	p.V873Gfs*42	ENST00000301030	NM_001256183.1	873	gTG/g																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2154251	2154251	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	104	312	0	ENST00000434045.2:c.677del	p.Gly226AlafsTer30	p.G226Afs*30	ENST00000434045	NM_001127598.1	226	gGc/gc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118347686	118347687	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	151	299	0	ENST00000534358.1:c.3327dup	p.Asn1110GlufsTer2	p.N1110Efs*2	ENST00000534358	NM_005933.3	1108	atg/atGg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434378	49434378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	175	309	0	ENST00000301067.7:c.7175del	p.Pro2392LeufsTer34	p.P2392Lfs*34	ENST00000301067	NM_003482.3	2392	cCt/ct																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48027196	48027196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	108	259	0	ENST00000234420.5:c.2079delA	p.Lys693AsnfsTer43	p.K693Nfs*43	ENST00000234420	NM_000179.2	692	Aaa/aa																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131944381	131944382	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	160	264	1	ENST00000265335.6:c.2801dup	p.Asn934LysfsTer10	p.N934Kfs*10	ENST00000265335		931	-/A																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436692	52436692	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0002792-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	24	291	0	ENST00000460680.1:c.1984-2A>G		p.X662_splice	ENST00000460680	NM_004656.3	662																																													NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	142950062	142950062	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002792-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	21	195	0	ENST00000262992.4:c.2648G>A	p.Gly883Glu	p.G883E	ENST00000262992	NM_001101669.1	883	gGa/gAa																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47038717	47038717	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0002792-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	82	79	0	ENST00000329236.7:c.494-1G>A		p.X165_splice	ENST00000329236	NM_001204466.1	165																																													NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174808	112174817	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGATCAGC	GTGGATCAGC	-			P-0002792-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	117	234	0	ENST00000257430.4:c.3517_3526del	p.Val1173LeufsTer6	p.V1173Lfs*6	ENST00000257430	NM_000038.5	1173	GTGGATCAGCct/ct																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578265	7578266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002792-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	146	285	0	ENST00000269305.4:c.583dupA	p.Ile195AsnfsTer14	p.I195Nfs*14	ENST00000269305	NM_001126112.2	195	atc/aAtc																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	420	430	2	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	205	513	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165791	47165791	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	22	535	0	ENST00000409792.3:c.335C>A	p.Ser112Ter	p.S112*	ENST00000409792	NM_014159.6	112	tCg/tAg																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11998891	11998891	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	114	374	1	ENST00000353533.5:c.394-1G>T		p.X132_splice	ENST00000353533	NM_003010.3	132																																													NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106157346	106157352	+	frameshift_variant	Frame_Shift_Del	DEL	AATAAAG	AATAAAG	-			P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	119	461	2	ENST00000380013.4:c.2255_2261del	p.Asn752ArgfsTer59	p.N752Rfs*59	ENST00000380013	NM_001127208.2	749	caAATAAAG/ca																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123215313	123215330	+	inframe_deletion	In_Frame_Del	DEL	ACGTTTTGCTTTAACTTT	ACGTTTTGCTTTAACTTT	-			P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	373	746	0	ENST00000218089.9:c.2859_2876del	p.Arg954_Phe959del	p.R954_F959del	ENST00000218089	NM_001042749.1	953	cgACGTTTTGCTTTAACTTTt/cgt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29559799	29559799	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	GAAAC			P-0005778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	150	610	1	ENST00000358273.4:c.3396delinsGAAAC	p.Gly1133LysfsTer63	p.G1133Kfs*63	ENST00000358273	NM_001042492.2	1132	cgT/cgGAAAC																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	59	391	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134151	41134151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	47	692	1	ENST00000379561.5:c.1477G>T	p.Gly493Cys	p.G493C	ENST00000379561	NM_002015.3	493	Ggc/Tgc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7573987	7573987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	60	513	0	ENST00000269305.4:c.1040C>A	p.Ala347Asp	p.A347D	ENST00000269305	NM_001126112.2	347	gCc/gAc																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412008	63412008	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	30	820	3	ENST00000330258.3:c.1159G>T	p.Glu387Ter	p.E387*	ENST00000330258	NM_152424.3	387	Gag/Tag																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86665642	86665643	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGATAGTAGTTCAGCACTTTAGTGAAGAA			P-0007753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	10	297	0	ENST00000274376.6:c.1626_1655dup	p.Gln542_Glu551dup	p.Q542_E551dup	ENST00000274376	NM_002890.2	542	-/CAGATAGTAGTTCAGCACTTTAGTGAAGAA																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1218483	1218483	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	63	460	0	ENST00000326873.7:c.358del	p.Glu120LysfsTer9	p.E120Kfs*9	ENST00000326873	NM_000455.4	120	Gaa/aa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0006148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	31	584	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29519923	29519923	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	44	265	1	ENST00000389048.3:c.1648C>A	p.Leu550Ile	p.L550I	ENST00000389048	NM_004304.4	550	Ctc/Atc																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412453	63412453	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	118	291	0	ENST00000330258.3:c.714A>C	p.Lys238Asn	p.K238N	ENST00000330258	NM_152424.3	238	aaA/aaC																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579432	7579433	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	66	287	0	ENST00000269305.4:c.254dup	p.Ala86CysfsTer63	p.A86Cfs*63	ENST00000269305	NM_001126112.2	85	cct/ccCt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578441	7578442	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	A			P-0006148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	173	312	0	ENST00000269305.4:c.488_489delinsT	p.Tyr163LeufsTer7	p.Y163Lfs*7	ENST00000269305	NM_001126112.2	163	tAC/tT																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11217275	11217275	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	349	632	0	ENST00000361445.4:c.4403A>G	p.Asp1468Gly	p.D1468G	ENST00000361445	NM_004958.3	1468	gAc/gGc																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65301163	65301164	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	260	397	0	ENST00000342505.4:c.3284_3285delinsTT	p.Thr1095Ile	p.T1095I	ENST00000342505	NM_002227.2	1095	aCC/aTT																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120457933	120457933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	228	319	2	ENST00000256646.2:c.7412C>T	p.Ala2471Val	p.A2471V	ENST00000256646	NM_024408.3	2471	gCg/gTg																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	244006429	244006429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	425	600	0	ENST00000263826.5:c.44G>A	p.Arg15Lys	p.R15K	ENST00000263826	NM_005465.4	15	aGg/aAg																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26068375	26068375	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	168	423	1	ENST00000435504.4:c.115C>T	p.Gln39Ter	p.Q39*	ENST00000435504		39	Cag/Tag																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29497997	29497997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	438	717	1	ENST00000389048.3:c.2009C>T	p.Ser670Leu	p.S670L	ENST00000389048	NM_004304.4	670	tCa/tTa																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99172168	99172168	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	167	560	1	ENST00000074304.5:c.1734C>A	p.Ser578Arg	p.S578R	ENST00000074304	NM_001134224.1	578	agC/agA																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190738254	190738254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	95	192	0	ENST00000441310.2:c.2506G>A	p.Glu836Lys	p.E836K	ENST00000441310	NM_000534.4	836	Gaa/Aaa																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37090440	37090440	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	251	397	0	ENST00000231790.2:c.2035G>T	p.Glu679Ter	p.E679*	ENST00000231790	NM_000249.3	679	Gaa/Taa																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185146557	185146557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	555	379	0	ENST00000265026.3:c.188C>T	p.Pro63Leu	p.P63L	ENST00000265026	NM_004721.4	63	cCc/cTc																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185184646	185184646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1127	411	695	2	ENST00000265026.3:c.1538G>T	p.Gly513Val	p.G513V	ENST00000265026	NM_004721.4	513	gGg/gTg																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55971017	55971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	342	530	2	ENST00000263923.4:c.1780C>T	p.His594Tyr	p.H594Y	ENST00000263923	NM_002253.2	594	Cat/Tat																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66270177	66270177	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	269	370	0	ENST00000273854.3:c.1705C>T	p.Gln569Ter	p.Q569*	ENST00000273854	NM_004439.5	569	Caa/Taa																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149500480	149500480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	340	527	2	ENST00000261799.4:c.2557C>T	p.Arg853Trp	p.R853W	ENST00000261799	NM_002609.3	853	Cgg/Tgg																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149513223	149513223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	343	567	2	ENST00000261799.4:c.860G>A	p.Gly287Glu	p.G287E	ENST00000261799	NM_002609.3	287	gGg/gAg																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176523318	176523318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	315	510	1	ENST00000292408.4:c.1975G>A	p.Glu659Lys	p.E659K	ENST00000292408	NM_213647.1	659	Gag/Aag																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	398896	398896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	690	423	0	ENST00000380956.4:c.706G>A	p.Glu236Lys	p.E236K	ENST00000380956	NM_001195286.1	236	Gag/Aag																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32163357	32163357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	742	743	2	ENST00000375023.3:c.5869G>A	p.Gly1957Arg	p.G1957R	ENST00000375023	NM_004557.3	1957	Gga/Aga																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32187555	32187555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	533	370	0	ENST00000375023.3:c.1324G>A	p.Gly442Ser	p.G442S	ENST00000375023	NM_004557.3	442	Ggc/Agc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116436012	116436012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	368	591	2	ENST00000397752.3:c.4007G>A	p.Arg1336Gln	p.R1336Q	ENST00000397752	NM_000245.2	1336	cGg/cAg																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152345990	152345990	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs180805457		P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	553	837	0	ENST00000359321.1:c.580A>G	p.Thr194Ala	p.T194A	ENST00000359321	NM_005431.1	194	Acg/Gcg																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	325	176	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	325	176	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139413963	139413963	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1743	441	630	0	ENST00000277541.6:c.797G>C	p.Cys266Ser	p.C266S	ENST00000277541	NM_017617.3	266	tGc/tCc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63851683	63851683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	234	424	0	ENST00000279873.7:c.2461C>T	p.His821Tyr	p.H821Y	ENST00000279873	NM_032199.2	821	Cat/Tat																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108119819	108119819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	525	410	0	ENST00000278616.4:c.1225C>T	p.Leu409Phe	p.L409F	ENST00000278616	NM_000051.3	409	Ctt/Ttt																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112888285	112888285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	262	425	0	ENST00000351677.2:c.301C>T	p.Pro101Ser	p.P101S	ENST00000351677	NM_002834.3	101	Cct/Tct																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112025	115112025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	222	360	1	ENST00000257566.3:c.1715G>A	p.Gly572Glu	p.G572E	ENST00000257566	NM_016569.3	572	gGg/gAg																																												NEWRECORD																																		
RAB35	0	MSKCC	GRCh37	12	120554402	120554402	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	25	109	0	ENST00000229340.5:c.52+1G>A		p.X18_splice	ENST00000229340	NM_006861.6	18																																													NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3779272	3779272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	196	375	0	ENST00000262367.5:c.5776C>T	p.Arg1926Trp	p.R1926W	ENST00000262367	NM_004380.2	1926	Cgg/Tgg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10273929	10273929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	396	626	0	ENST00000330684.3:c.340G>A	p.Asp114Asn	p.D114N	ENST00000330684	NM_001134407.1	114	Gat/Aat																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89337296	89337296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	344	505	1	ENST00000301030.4:c.7735C>T	p.Arg2579Cys	p.R2579C	ENST00000301030	NM_001256183.1	2579	Cgc/Tgc																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89813074	89813074	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138112218		P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	231	405	0	ENST00000389301.3:c.3431G>A	p.Arg1144Gln	p.R1144Q	ENST00000389301	NM_000135.2	1144	cGg/cAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577528	7577529	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	284	512	0	ENST00000269305.4:c.752_753delinsAT	p.Ile251Asn	p.I251N	ENST00000269305	NM_001126112.2	251	aTC/aAT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	450	671	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30315348	30315349	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	276	327	0	ENST00000322652.5:c.1033_1034delinsTT	p.Pro345Leu	p.P345L	ENST00000322652	NM_015355.2	345	CCa/TTa																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39550367	39550368	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	237	432	0	ENST00000262039.4:c.478_479delCCinsTT	p.Pro160Phe	p.P160F	ENST00000262039	NM_002647.2	160	CCt/TTt																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5238951	5238951	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	261	317	3	ENST00000357368.4:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000357368	NM_002850.3	610	Cgg/Tgg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610330	10610330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	283	470	0	ENST00000171111.5:c.380G>A	p.Gly127Asp	p.G127D	ENST00000171111	NM_203500.1	127	gGt/gAt																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9560853	9560853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	355	553	0	ENST00000353224.5:c.929G>A	p.Gly310Glu	p.G310E	ENST00000353224	NM_177990.2	310	gGa/gAa																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41408878	41408878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	313	557	2	ENST00000373198.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000373198	NM_133170.3	183	cGg/cAg																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39755518	39755519	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	270	581	0	ENST00000288319.7:c.1246_1247delinsTT	p.Pro416Leu	p.P416L	ENST00000288319	NM_182918.3	416	CCg/TTg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47006759	47006759	+	5_prime_UTR_variant	5'UTR	SNP	C	C	T			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	342	260	0	ENST00000329236.7:c.-122C>T		p.*41*	ENST00000329236	NM_001204466.1																																														NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411527	63411527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	524	455	0	ENST00000330258.3:c.1640C>T	p.Ser547Phe	p.S547F	ENST00000330258	NM_152424.3	547	tCc/tTc																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434005	49434005	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	218	420	0	ENST00000301067.7:c.7548del	p.Asn2517IlefsTer26	p.N2517Ifs*26	ENST00000301067	NM_003482.3	2516	ccC/cc																																												NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432118	121432118	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs766982432		P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	275	528	3	ENST00000257555.6:c.872del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		289	Ccc/cc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49425456	49425456	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	434	743	1	ENST00000301067.7:c.13032del	p.Lys4345AsnfsTer39	p.K4345Nfs*39	ENST00000301067	NM_003482.3	4344	ccC/cc																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25966873	25966873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	111	531	5	ENST00000435504.4:c.2333del	p.Pro778GlnfsTer21	p.P778Qfs*21	ENST00000435504		778	cCa/ca																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3786734	3786734	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	463	778	0	ENST00000262367.5:c.4477del	p.Ile1493TyrfsTer57	p.I1493Yfs*57	ENST00000262367	NM_004380.2	1493	Ata/ta																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8106029	8106029	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	278	358	0	ENST00000346208.3:c.849del	p.Cys284AlafsTer10	p.C284Afs*10	ENST00000346208		283	ctG/ct																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202151246	202151246	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	433	588	0	ENST00000358485.4:c.1550del	p.Asn517ThrfsTer13	p.N517Tfs*13	ENST00000358485	NM_001080125.1	516	Aaa/aa																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204515939	204515939	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	339	528	2	ENST00000367182.3:c.842del	p.Asn281MetfsTer10	p.N281Mfs*10	ENST00000367182	NM_001278516.1	279	ggA/gg																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150001455	150001456	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	590	445	0	ENST00000253339.5:c.2148dup	p.Gly717TrpfsTer2	p.G717Wfs*2	ENST00000253339		716	-/T																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41548269	41548269	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	595	404	1	ENST00000263253.7:c.3061del	p.Thr1021LeufsTer3	p.T1021Lfs*3	ENST00000263253	NM_001429.3	1019	ttA/tt																																												NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110435128	110435129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs772322568		P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	174	350	2	ENST00000375856.3:c.3272dup	p.Lys1092GlufsTer233	p.K1092Efs*233	ENST00000375856	NM_003749.2	1091	ccg/ccCg																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36935323	36935323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	404	692	2	ENST00000361632.4:c.1404delC	p.Ser469AlafsTer22	p.S469Afs*22	ENST00000361632		468	ccC/cc																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91293221	91293221	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	153	236	0	ENST00000355112.3:c.726del	p.Ile243LeufsTer6	p.I243Lfs*6	ENST00000355112	NM_000057.2	241	ggC/gg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	119	207	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	178	262	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63554327	63554327	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	269	471	0	ENST00000307078.5:c.412T>C	p.Tyr138His	p.Y138H	ENST00000307078	NM_004655.3	138	Tac/Cac																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153245401	153245401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	199	303	0	ENST00000281708.4:c.1790G>A	p.Gly597Glu	p.G597E	ENST00000281708	NM_033632.3	597	gGg/gAg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56181840	56181840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	165	301	1	ENST00000399503.3:c.4064G>A	p.Arg1355His	p.R1355H	ENST00000399503	NM_005921.1	1355	cGt/cAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174182	112174182	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	175	292	0	ENST00000257430.4:c.2891T>A	p.Leu964Ter	p.L964*	ENST00000257430	NM_000038.5	964	tTa/tAa																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248159	59248174	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCCGGCCGCGCCGT	AGGCCGGCCGCGCCGT	-			P-0012693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	54	46	0	ENST00000371222.2:c.569_584del	p.Tyr190TrpfsTer31	p.Y190Wfs*31	ENST00000371222	NM_002228.3	190	tACGGCGCGGCCGGCCTg/tg																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	338151	338153	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0012693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	227	425	0	ENST00000262320.3:c.2558_2560del	p.Lys853del	p.K853del	ENST00000262320	NM_003502.3	853	aAGAtc/atc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175769	112175770	+	frameshift_variant	Frame_Shift_Ins	INS	CG	CG	TTAA			P-0012693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	96	180	0	ENST00000257430.4:c.4478_4479delinsTTAA	p.Thr1493IlefsTer15	p.T1493Ifs*15	ENST00000257430	NM_000038.5	1493	aCG/aTTAA																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29912364	29912364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	198	460	1	ENST00000376809.5:c.983C>T	p.Ala328Val	p.A328V	ENST00000376809	NM_002116.7	328	gCt/gTt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117609861	117609861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	242	757	1	ENST00000368508.3:c.6838G>A	p.Glu2280Lys	p.E2280K	ENST00000368508	NM_002944.2	2280	Gaa/Aaa																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150001394	150001394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	240	548	2	ENST00000253339.5:c.2210G>T	p.Arg737Leu	p.R737L	ENST00000253339		737	cGa/cTa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89725111	89725112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0013050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	32	95	0	ENST00000371953.3:c.1095_1096insCA	p.Thr366GlnfsTer51	p.T366Qfs*51	ENST00000371953	NM_000314.4	365	gta/gtACa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	492	393	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac																																												NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0005070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	86	299	1	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49924886	49924886	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	255	479	0	ENST00000296474.3:c.4057T>C	p.Tyr1353His	p.Y1353H	ENST00000296474	NM_002447.2	1353	Tat/Cat																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177466	112177466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	129	378	1	ENST00000257430.4:c.6175G>A	p.Asp2059Asn	p.D2059N	ENST00000257430	NM_000038.5	2059	Gat/Aat																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180045918	180045918	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0005070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	74	214	0	ENST00000261937.6:c.2853G>C	p.Glu951Asp	p.E951D	ENST00000261937	NM_182925.4	951	gaG/gaC																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32169981	32169981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	99	426	0	ENST00000375023.3:c.3627C>A	p.Asp1209Glu	p.D1209E	ENST00000375023	NM_004557.3	1209	gaC/gaA																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	375	502	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61719259	61719259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1457	471	614	0	ENST00000401558.2:c.1798G>A	p.Val600Ile	p.V600I	ENST00000401558	NM_003400.3	600	Gtt/Att																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175162	112175162	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	174	281	0	ENST00000257430.4:c.3871C>G	p.Gln1291Glu	p.Q1291E	ENST00000257430	NM_000038.5	1291	Cag/Gag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175221	112175221	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	201	320	0	ENST00000257430.4:c.3930del	p.Ile1311LeufsTer10	p.I1311Lfs*10	ENST00000257430	NM_000038.5	1310	aaG/aa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720805	89720806	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	106	158	0	ENST00000371953.3:c.959dupT	p.Leu320PhefsTer5	p.L320Ffs*5	ENST00000371953	NM_000314.4	319	act/acTt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46230555	46230556	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	428	590	0	ENST00000334344.6:c.805_806delTT	p.Leu269IlefsTer10	p.L269Ifs*10	ENST00000334344	NM_152641.2	268	tcTTta/tcta																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108153439	108153440	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TT	TT	G			P-0010219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	768	485	0	ENST00000278616.4:c.3579_3580delinsG	p.Leu1194Ter	p.L1194*	ENST00000278616	NM_000051.3	1193	gtTTta/gtGta																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	116	514	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55524244	55524244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	161	534	0	ENST00000288135.5:c.63G>T	p.Gln21His	p.Q21H	ENST00000288135	NM_000222.2	21	caG/caT																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45374930	45374930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	60	508	0	ENST00000262160.6:c.913C>A	p.Pro305Thr	p.P305T	ENST00000262160	NM_005901.5	305	Cca/Aca																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45375038	45375041	+	frameshift_variant	Frame_Shift_Del	DEL	AGTA	AGTA	-			P-0008852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	14	297	0	ENST00000262160.6:c.802_805del	p.Tyr268GlnfsTer9	p.Y268Qfs*9	ENST00000262160	NM_005901.5	268	TACTca/ca																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45368311	45368311	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	26	501	0	ENST00000262160.6:c.1291del	p.Val431Ter	p.V431*	ENST00000262160	NM_005901.5	431	Gta/ta																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49416561	49416562	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	27	377	0	ENST00000301067.7:c.16149dup	p.Lys5384GlnfsTer75	p.K5384Qfs*75	ENST00000301067	NM_003482.3	5383	-/C																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000952-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			184	1306	586	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0000952-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			576	277	514	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000952-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			766	419	1073	0	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000952-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			746	401	799	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187554954	187554955	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000952-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			839	444	833	0	ENST00000441802.2:c.4206_4207insA	p.Asp1403ArgfsTer16	p.D1403Rfs*16	ENST00000441802	NM_005245.3	1402	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	55	536	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	69	541	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185146499	185146499	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35266179		P-0005862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	25	426	0	ENST00000265026.3:c.130G>A	p.Glu44Lys	p.E44K	ENST00000265026	NM_004721.4	44	Gag/Aag																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630826	187630826	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	52	618	1	ENST00000441802.2:c.156T>A	p.Tyr52Ter	p.Y52*	ENST00000441802	NM_005245.3	52	taT/taA																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117678995	117678995	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	19	384	0	ENST00000368508.3:c.3826A>C	p.Ile1276Leu	p.I1276L	ENST00000368508	NM_002944.2	1276	Att/Ctt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434142	49434142	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	67	545	0	ENST00000301067.7:c.7411C>T	p.Arg2471Ter	p.R2471*	ENST00000301067	NM_003482.3	2471	Cga/Tga																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41553356	41553356	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	43	619	0	ENST00000263253.7:c.3445T>A	p.Phe1149Ile	p.F1149I	ENST00000263253	NM_001429.3	1149	Ttt/Att																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49443666	49443667	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	28	534	0	ENST00000301067.7:c.3704dup	p.Gly1236TrpfsTer14	p.G1236Wfs*14	ENST00000301067	NM_003482.3	1235	ggt/ggGt																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176709475	176709476	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGAA			P-0005862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	61	724	0	ENST00000439151.2:c.5906_5909dup	p.Tyr1971Ter	p.Y1971*	ENST00000439151	NM_022455.4	1968	gtg/gTGAAtg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	230	351	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	482	434	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106157920	106157920	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	255	292	0	ENST00000380013.4:c.2821C>T	p.Pro941Ser	p.P941S	ENST00000380013	NM_001127208.2	941	Cct/Tct																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56168484	56168484	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	143	250	0	ENST00000399503.3:c.1440A>T	p.Arg480Ser	p.R480S	ENST00000399503	NM_005921.1	480	agA/agT																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152357845	152357845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1371	470	797	1	ENST00000359321.1:c.62G>A	p.Arg21Lys	p.R21K	ENST00000359321	NM_005431.1	21	aGa/aAa																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73346334	73346334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	220	430	0	ENST00000377767.4:c.1466C>A	p.Ala489Asp	p.A489D	ENST00000377767	NM_014953.3	489	gCt/gAt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29657448	29657448	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	280	497	0	ENST00000358273.4:c.5744T>C	p.Leu1915Pro	p.L1915P	ENST00000358273	NM_001042492.2	1915	cTg/cCg																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41243571	41243571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	420	694	0	ENST00000357654.3:c.3977A>G	p.His1326Arg	p.H1326R	ENST00000357654	NM_007294.3	1326	cAt/cGt																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10244973	10244973	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	376	500	0	ENST00000340748.4:c.4736C>G	p.Ala1579Gly	p.A1579G	ENST00000340748		1579	gCc/gGc																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25965003	25965004	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0013046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	156	538	0	ENST00000435504.4:c.4202dup	p.Tyr1401Ter	p.Y1401*	ENST00000435504		1401	tac/taAc																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	136	490	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332337	70332337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	168	678	2	ENST00000373644.4:c.242G>A	p.Arg81His	p.R81H	ENST00000373644	NM_030625.2	81	cGc/cAc																																												NEWRECORD																																		
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	122	486	0	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	109	412	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	63	674	0	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																												NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743932	41743933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778012871		P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	150	865	1	ENST00000301178.4:c.874dup	p.His292ProfsTer47	p.H292Pfs*47	ENST00000301178	NM_021913.4	289	-/C																																												NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	78	760	3	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																												NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	63	508	0	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	74	603	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140439695	140439695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	85	255	0	ENST00000288602.6:c.2044C>T	p.Arg682Trp	p.R682W	ENST00000288602	NM_004333.4	682	Cgg/Tgg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	195	893	2	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2136799	2136799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	90	729	4	ENST00000219476.3:c.4916G>A	p.Arg1639His	p.R1639H	ENST00000219476	NM_000548.3	1639	cGc/cAc																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46279861	46279866	+	inframe_deletion	In_Frame_Del	DEL	CAGCAA	CAGCAA	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	47	468	1	ENST00000371998.3:c.3810_3815delACAGCA	p.Gln1275_Gln1276del	p.Q1275_Q1276del	ENST00000371998		1263	CAGCAA/-																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81381529	81381529	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	102	778	1	ENST00000222390.5:c.532C>T	p.Arg178Ter	p.R178*	ENST00000222390	NM_000601.4	178	Cga/Tga																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11144018	11144018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	63	561	0	ENST00000344626.4:c.3599G>A	p.Arg1200His	p.R1200H	ENST00000344626	NM_003072.3	1200	cGt/cAt																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76939673	76939674	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	91	470	0	ENST00000373344.5:c.1074dupA	p.Leu359ThrfsTer3	p.L359Tfs*3	ENST00000373344	NM_000489.3	358	-/A																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10250948	10250948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	57	479	0	ENST00000340748.4:c.3532C>T	p.Arg1178Trp	p.R1178W	ENST00000340748		1178	Cgg/Tgg																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	28	384	0	ENST00000237289.4:c.1368delG	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38512377	38512377	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	47	457	1	ENST00000254066.5:c.1293delG	p.Arg432GlyfsTer211	p.R432Gfs*211	ENST00000254066	NM_000964.3	430	Ggg/gg																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56448310	56448310	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	104	589	1	ENST00000407977.2:c.337C>T	p.Arg113Ter	p.R113*	ENST00000407977		113	Cga/Tga																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073643	8073643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	111	1076	3	ENST00000377482.5:c.1016C>T	p.Pro339Leu	p.P339L	ENST00000377482	NM_018948.3	339	cCg/cTg																																												NEWRECORD																																		
MYCL1	0	MSKCC	GRCh37	1	40366679	40366679	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	96	443	0	ENST00000397332.2:c.518C>G	p.Ala173Gly	p.A173G	ENST00000397332	NM_001033082.2	173	gCc/gGc																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128050226	128050226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	148	637	1	ENST00000285398.2:c.431G>A	p.Ser144Asn	p.S144N	ENST00000285398	NM_000122.1	144	aGc/aAc																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190708754	190708754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	170	756	0	ENST00000441310.2:c.647C>T	p.Thr216Ile	p.T216I	ENST00000441310	NM_000534.4	216	aCt/aTt																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198262823	198262823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	54	426	0	ENST00000335508.6:c.3152C>A	p.Ser1051Tyr	p.S1051Y	ENST00000335508	NM_012433.2	1051	tCt/tAt																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71015194	71015194	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	33	494	0	ENST00000318789.4:c.1736A>G	p.Glu579Gly	p.E579G	ENST00000318789	NM_032682.5	579	gAg/gGg																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134644697	134644697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	40	486	0	ENST00000398015.3:c.98G>A	p.Gly33Asp	p.G33D	ENST00000398015	NM_004441.4	33	gGc/gAc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134898732	134898732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	99	779	0	ENST00000398015.3:c.1790C>T	p.Pro597Leu	p.P597L	ENST00000398015	NM_004441.4	597	cCc/cTc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55602716	55602716	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	82	724	0	ENST00000288135.5:c.2537A>G	p.Tyr846Cys	p.Y846C	ENST00000288135	NM_000222.2	846	tAc/tGc																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153251933	153251933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	212	915	0	ENST00000281708.4:c.1073A>G	p.Gln358Arg	p.Q358R	ENST00000281708	NM_033632.3	358	cAg/cGg																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149500531	149500531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	143	634	0	ENST00000261799.4:c.2506G>A	p.Glu836Lys	p.E836K	ENST00000261799	NM_002609.3	836	Gaa/Aaa																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	401745	401745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	47	524	0	ENST00000380956.4:c.1067G>A	p.Cys356Tyr	p.C356Y	ENST00000380956	NM_001195286.1	356	tGc/tAc																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29910684	29910684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	71	712	0	ENST00000376809.5:c.224G>A	p.Trp75Ter	p.W75*	ENST00000376809	NM_002116.7	75	tGg/tAg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117687297	117687297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	151	761	0	ENST00000368508.3:c.2754G>C	p.Leu918Phe	p.L918F	ENST00000368508	NM_002944.2	918	ttG/ttC																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150004937	150004937	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	260	770	2	ENST00000253339.5:c.1288C>T	p.Gln430Ter	p.Q430*	ENST00000253339		430	Caa/Taa																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41739848	41739848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	188	803	1	ENST00000242208.4:c.125C>T	p.Ala42Val	p.A42V	ENST00000242208	NM_002192.2	42	gCc/gTc																																												NEWRECORD																																		
NKX3-1	0	MSKCC	GRCh37	8	23539063	23539063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	128	608	4	ENST00000380871.4:c.376C>T	p.Arg126Cys	p.R126C	ENST00000380871	NM_006167.3	126	Cgc/Tgc																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5089702	5089702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	62	615	1	ENST00000381652.3:c.2600G>A	p.Arg867Gln	p.R867Q	ENST00000381652	NM_004972.3	867	cGg/cAg																																												NEWRECORD																																		
TRAF2	0	MSKCC	GRCh37	9	139814869	139814869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	94	940	1	ENST00000247668.2:c.862G>A	p.Val288Ile	p.V288I	ENST00000247668	NM_021138.3	288	Gtc/Atc																																												NEWRECORD																																		
LMO1	0	MSKCC	GRCh37	11	8252049	8252049	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	38	430	0	ENST00000335790.3:c.28G>A	p.Val10Met	p.V10M	ENST00000335790	NM_002315.2	10	Gtg/Atg																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94194110	94194110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	99	775	3	ENST00000323929.3:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000323929	NM_005591.3	440	Gca/Aca																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108199783	108199783	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	84	357	0	ENST00000278616.4:c.7125T>A	p.Ser2375Arg	p.S2375R	ENST00000278616	NM_000051.3	2375	agT/agA																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57859598	57859598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	178	907	2	ENST00000228682.2:c.652C>T	p.Arg218Trp	p.R218W	ENST00000228682	NM_005269.2	218	Cgg/Tgg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133248859	133248859	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149296223		P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	77	717	1	ENST00000320574.5:c.1736G>A	p.Arg579His	p.R579H	ENST00000320574	NM_006231.2	579	cGc/cAc																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67660585	67660585	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	223	925	0	ENST00000264010.4:c.1485T>G	p.Phe495Leu	p.F495L	ENST00000264010	NM_006565.3	495	ttT/ttG																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68853315	68853315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	100	562	0	ENST00000261769.5:c.1698A>G	p.Ile566Met	p.I566M	ENST00000261769	NM_004360.3	566	atA/atG																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15298099	15298099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	65	638	1	ENST00000263388.2:c.1657C>T	p.Pro553Ser	p.P553S	ENST00000263388	NM_000435.2	553	Cca/Tca																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15376430	15376430	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201736007		P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	189	967	2	ENST00000263377.2:c.584C>T	p.Thr195Met	p.T195M	ENST00000263377	NM_058243.2	195	aCg/aTg																																												NEWRECORD																																		
MEF2B	0	MSKCC	GRCh37	19	19257409	19257409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	128	850	1	ENST00000162023.5:c.724G>A	p.Gly242Arg	p.G242R	ENST00000162023		242	Gga/Aga																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31021497	31021497	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	142	592	1	ENST00000375687.4:c.1496G>A	p.Arg499His	p.R499H	ENST00000375687	NM_015338.5	499	cGt/cAt																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31395624	31395624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	87	648	1	ENST00000328111.2:c.2477G>A	p.Arg826His	p.R826H	ENST00000328111	NM_006892.3	826	cGc/cAc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36259318	36259318	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	37	264	0	ENST00000300305.3:c.173T>C	p.Leu58Pro	p.L58P	ENST00000300305		58	cTg/cCg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117678970	117678970	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	43	397	0	ENST00000368508.3:c.3851del	p.Leu1284Ter	p.L1284*	ENST00000368508	NM_002944.2	1284	tTa/ta																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48954189	48954191	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GAA	GAA	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	114	421	0	ENST00000267163.4:c.1396_1398delGAA	p.Glu466del	p.E466del	ENST00000267163	NM_000321.2	464	GAA/-																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209106756	209106756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	87	706	0	ENST00000345146.2:c.812del	p.Asn271ThrfsTer20	p.N271Tfs*20	ENST00000345146	NM_005896.2	271	aAc/ac																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108114733	108114734	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	54	469	0	ENST00000278616.4:c.552_553del	p.Arg184SerfsTer5	p.R184Sfs*5	ENST00000278616	NM_000051.3	184	AGa/a																																												NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15296203	15296204	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	48	559	0	ENST00000263388.2:c.2160_2161del	p.Cys720Ter	p.C720*	ENST00000263388	NM_000435.2	720	tgTGag/tgag																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993014	72993014	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	232	1056	0	ENST00000268489.5:c.1031del	p.Asn344ThrfsTer8	p.N344Tfs*8	ENST00000268489	NM_006885.3	344	aAc/ac																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5245995	5245996	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	96	552	0	ENST00000357368.4:c.779dup	p.Asn261GlnfsTer30	p.N261Qfs*30	ENST00000357368	NM_002850.3	260	ggc/ggGc																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1611771	1611771	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	73	897	0	ENST00000344749.5:c.1891del	p.Gln631ArgfsTer11	p.Q631Rfs*11	ENST00000344749	NM_001136139.2	631	Cag/ag																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37673703	37673703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	72	431	0	ENST00000447079.4:c.2857G>A	p.Gly953Ser	p.G953S	ENST00000447079	NM_015083.1	953	Ggt/Agt																																												NEWRECORD																																		
H3F3C	0	MSKCC	GRCh37	12	31944841	31944842	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0009401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	57	465	0	ENST00000340398.3:c.259_260del	p.Ala87SerfsTer9	p.A87Sfs*9	ENST00000340398	NM_001013699.2	87	GCa/a																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37618989	37618990	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	59	219	0	ENST00000447079.4:c.670dup	p.His224ProfsTer6	p.H224Pfs*6	ENST00000447079	NM_015083.1	222	agc/agCc																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46740256	46740256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	84	411	0	ENST00000371975.4:c.1736G>T	p.Gly579Val	p.G579V	ENST00000371975	NM_003579.3	579	gGc/gTc																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227659982	227659982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	110	476	1	ENST00000305123.5:c.3473G>A	p.Gly1158Glu	p.G1158E	ENST00000305123	NM_005544.2	1158	gGa/gAa																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138383960	138383960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	154	479	0	ENST00000289153.2:c.2590C>A	p.Gln864Lys	p.Q864K	ENST00000289153	NM_006219.2	864	Cag/Aag																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176523155	176523155	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	100	428	0	ENST00000292408.4:c.1919T>C	p.Ile640Thr	p.I640T	ENST00000292408	NM_213647.1	640	aTt/aCt																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148508793	148508793	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	104	412	0	ENST00000320356.2:c.1871C>G	p.Ser624Cys	p.S624C	ENST00000320356	NM_004456.4	624	tCt/tGt																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80336308	80336308	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	82	410	0	ENST00000286548.4:c.1011C>G	p.Ile337Met	p.I337M	ENST00000286548	NM_002072.3	337	atC/atG																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98229525	98229525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	142	573	0	ENST00000331920.6:c.2433C>A	p.Asp811Glu	p.D811E	ENST00000331920	NM_000264.3	811	gaC/gaA																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32450080	32450080	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	40	371	0	ENST00000332351.3:c.732C>G	p.Phe244Leu	p.F244L	ENST00000332351	NM_024426.4	244	ttC/ttG																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420151	49420151	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	77	351	0	ENST00000301067.7:c.15598C>T	p.His5200Tyr	p.H5200Y	ENST00000301067	NM_003482.3	5200	Cat/Tat																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111885940	111885940	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1948	165	739	0	ENST00000341259.2:c.1562C>G	p.Pro521Arg	p.P521R	ENST00000341259	NM_005475.2	521	cCc/cGc																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59857662	59857662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	189	489	0	ENST00000259008.2:c.1895C>T	p.Thr632Ile	p.T632I	ENST00000259008	NM_032043.2	632	aCt/aTt																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15378353	15378353	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	69	326	1	ENST00000263377.2:c.433G>T	p.Asp145Tyr	p.D145Y	ENST00000263377	NM_058243.2	145	Gac/Tac																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40761117	40761118	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGGCAGCGTATGACAAAGGTGTTGGGTCGCGGCCT			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	120	459	0	ENST00000392038.2:c.199_234dup	p.Arg67_Leu78dup	p.R67_L78dup	ENST00000392038	NM_001626.4	67	-/AGGCCGCGACCCAACACCTTTGTCATACGCTGCCTG																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50918127	50918148	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCCCGGCCCGACGCCCACGA	CCTCCCGGCCCGACGCCCACGA	-			P-0008767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	294	690	0	ENST00000440232.2:c.2446_2467del	p.Ser816AlafsTer65	p.S816Afs*65	ENST00000440232	NM_002691.3	815	tCCTCCCGGCCCGACGCCCACGAc/tc																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	299	501	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	215	303	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	179	281	0	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	137	264	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	59	174	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	202	390	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	99	136	1	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	192	296	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15271819	15271819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	189	244	0	ENST00000263388.2:c.6620G>A	p.Arg2207Gln	p.R2207Q	ENST00000263388	NM_000435.2	2207	cGg/cAg																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	607	475	6	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157522260	157522260	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	222	367	0	ENST00000346085.5:c.4532A>G	p.Gln1511Arg	p.Q1511R	ENST00000346085	NM_020732.3	1511	cAg/cGg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112137024	112137024	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	164	273	0	ENST00000257430.4:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000257430	NM_000038.5	260	Cag/Tag																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11190792	11190792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	179	244	1	ENST00000361445.4:c.5407C>T	p.His1803Tyr	p.H1803Y	ENST00000361445	NM_004958.3	1803	Cac/Tac																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65313296	65313296	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	307	567	0	ENST00000342505.4:c.1818G>C	p.Lys606Asn	p.K606N	ENST00000342505	NM_002227.2	606	aaG/aaC																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71026794	71026794	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	161	296	0	ENST00000318789.4:c.1428G>T	p.Gln476His	p.Q476H	ENST00000318789	NM_032682.5	476	caG/caT																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106155467	106155467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	255	375	0	ENST00000380013.4:c.368G>A	p.Arg123His	p.R123H	ENST00000380013	NM_001127208.2	123	cGt/cAt																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509648	106509648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	236	409	0	ENST00000359195.3:c.1642C>T	p.Pro548Ser	p.P548S	ENST00000359195	NM_002649.2	548	Ccc/Tcc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116397696	116397696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	174	317	0	ENST00000397752.3:c.1970C>T	p.Pro657Leu	p.P657L	ENST00000397752	NM_000245.2	657	cCt/cTt																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371828	55371828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	30	14	0	ENST00000297316.4:c.518G>A	p.Arg173His	p.R173H	ENST00000297316	NM_022454.3	173	cGc/cAc																																												NEWRECORD																																		
LMO1	0	MSKCC	GRCh37	11	8248573	8248573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	288	446	3	ENST00000335790.3:c.314G>A	p.Arg105Gln	p.R105Q	ENST00000335790	NM_002315.2	105	cGg/cAg																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95574678	95574678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	178	343	2	ENST00000343455.3:c.2419G>A	p.Ala807Thr	p.A807T	ENST00000343455	NM_177438.2	807	Gcc/Acc																																												NEWRECORD																																		
STAT5B	0	MSKCC	GRCh37	17	40353761	40353761	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	385	603	0	ENST00000293328.3:c.2359T>C	p.Ser787Pro	p.S787P	ENST00000293328	NM_012448.3	787	Tcg/Ccg																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120460319	120460319	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	145	362	0	ENST00000256646.2:c.5996del	p.Asn1999MetfsTer32	p.N1999Mfs*32	ENST00000256646	NM_024408.3	1999	aAt/at																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112164664	112164664	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	185	158	0	ENST00000257430.4:c.1742delA	p.Lys581ArgfsTer9	p.K581Rfs*9	ENST00000257430	NM_000038.5	580	Aaa/aa																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128851941	128851943	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0010798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	179	390	0	ENST00000249373.3:c.2021_2023del	p.Lys674del	p.K674del	ENST00000249373	NM_005631.4	671	cgGAAg/cgg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	181	520	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27097651	27097652	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	242	688	0	ENST00000324856.7:c.3242dup	p.Asn1081LysfsTer24	p.N1081Kfs*24	ENST00000324856	NM_006015.4	1080	-/A																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	104	329	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76849167	76849167	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	100	382	0	ENST00000373344.5:c.6109G>A	p.Val2037Ile	p.V2037I	ENST00000373344	NM_000489.3	2037	Gtc/Atc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1222986	1222986	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	61	225	0	ENST00000326873.7:c.923G>T	p.Trp308Leu	p.W308L	ENST00000326873	NM_000455.4	308	tGg/tTg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42791758	42791758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	15	343	0	ENST00000575354.2:c.644G>A	p.Arg215Gln	p.R215Q	ENST00000575354	NM_015125.3	215	cGg/cAg																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162741861	162741861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	194	356	0	ENST00000367921.3:c.1552G>T	p.Val518Leu	p.V518L	ENST00000367921	NM_006182.2	518	Gtg/Ttg																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225370845	225370845	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	67	237	0	ENST00000264414.4:c.1034T>A	p.Leu345Ter	p.L345*	ENST00000264414	NM_003590.4	345	tTa/tAa																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225422461	225422461	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	119	345	0	ENST00000264414.4:c.179A>T	p.Asn60Ile	p.N60I	ENST00000264414	NM_003590.4	60	aAt/aTt																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131915553	131915553	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	47	186	0	ENST00000265335.6:c.552-1G>T		p.X184_splice	ENST00000265335		184																																													NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32189085	32189085	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	64	295	1	ENST00000375023.3:c.469C>T	p.Arg157Trp	p.R157W	ENST00000375023	NM_004557.3	157	Cgg/Tgg																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94120300	94120300	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	66	498	0	ENST00000369303.4:c.751A>T	p.Ser251Cys	p.S251C	ENST00000369303	NM_004440.3	251	Agt/Tgt																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116435965	116435965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	101	408	0	ENST00000397752.3:c.3960G>T	p.Trp1320Cys	p.W1320C	ENST00000397752	NM_000245.2	1320	tgG/tgT																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49448151	49448151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	96	399	0	ENST00000301067.7:c.449G>T	p.Trp150Leu	p.W150L	ENST00000301067	NM_003482.3	150	tGg/tTg																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2220634	2220634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	97	377	0	ENST00000326181.6:c.251G>T	p.Arg84Leu	p.R84L	ENST00000326181	NM_032271.2	84	cGc/cTc																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921598	39921598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	96	424	0	ENST00000378444.4:c.4222G>T	p.Asp1408Tyr	p.D1408Y	ENST00000378444	NM_001123385.1	1408	Gat/Tat																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39932985	39932985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	88	415	0	ENST00000378444.4:c.1614G>T	p.Gln538His	p.Q538H	ENST00000378444	NM_001123385.1	538	caG/caT																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68845619	68845619	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	TA			P-0005194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	135	424	0	ENST00000261769.5:c.865delinsTA	p.Ala289TyrfsTer4	p.A289Yfs*4	ENST00000261769	NM_004360.3	289	Gcg/TAcg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	22	289	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	77	394	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	109	621	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	85	522	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	85	522	0	ENST00000304494.5:c.130dup	p.Tyr44LeufsTer76	p.Y44Lfs*76	ENST00000304494	NM_000077.4	44	tac/tTac																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49423253	49423253	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	74	340	0	ENST00000301067.7:c.14006C>A	p.Ser4669Ter	p.S4669*	ENST00000301067	NM_003482.3	4669	tCa/tAa																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	396878	396878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	91	532	0	ENST00000262320.3:c.148G>A	p.Val50Ile	p.V50I	ENST00000262320	NM_003502.3	50	Gtt/Att																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29450535	29450535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	47	881	1	ENST00000389048.3:c.2819G>A	p.Gly940Asp	p.G940D	ENST00000389048	NM_004304.4	940	gGc/gAc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	56	349	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			78	45	558	0	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc																																												NEWRECORD																																		
CDK4	0	MSKCC	GRCh37	12	58144485	58144485	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	84	614	0	ENST00000257904.6:c.586G>C	p.Asp196His	p.D196H	ENST00000257904	NM_000075.3	196	Gac/Cac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	61	635	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56440637	56440637	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	79	1148	1	ENST00000407977.2:c.581G>C	p.Trp194Ser	p.W194S	ENST00000407977		194	tGg/tCg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000015-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	75	967	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	130	232	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7573999	7573999	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	566	678	0	ENST00000269305.4:c.1028delA	p.Glu343GlyfsTer2	p.E343Gfs*2	ENST00000269305	NM_001126112.2	343	gAg/gg																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137524641	137524641	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	242	375	0	ENST00000367739.4:c.728T>G	p.Ile243Arg	p.I243R	ENST00000367739	NM_000416.2	243	aTa/aGa																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652120	36652130	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCCGGCGA	GGCCCCGGCGA	-			P-0009644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	840	353	0	ENST00000244741.5:c.246_256del	p.Arg83GlyfsTer2	p.R83Gfs*2	ENST00000244741	NM_000389.4	81	gGGCCCCGGCGA/g																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266086	41266097	+	inframe_deletion	In_Frame_Del	DEL	AGTCTTACCTGG	AGTCTTACCTGG	-			P-0009644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	218	500	0	ENST00000349496.5:c.84_95del	p.Gln28_Asp32delinsHis	p.Q28_D32delinsH	ENST00000349496	NM_001904.3	28	cAGTCTTACCTGGac/cac																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150001539	150001540	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	162	323	0	ENST00000253339.5:c.2064dup	p.Glu689ArgfsTer3	p.E689Rfs*3	ENST00000253339		688	-/A																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226564961	226564961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000337-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			775	167	365	0	ENST00000366794.5:c.1789G>A	p.Gly597Ser	p.G597S	ENST00000366794	NM_001618.3	597	Ggt/Agt																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371908	55371908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000337-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			325	38	256	0	ENST00000297316.4:c.598G>T	p.Gly200Cys	p.G200C	ENST00000297316	NM_022454.3	200	Ggc/Tgc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115854	8115855	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000337-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1787	201	1563	0	ENST00000346208.3:c.1201dupT	p.Ser401PhefsTer106	p.S401Ffs*106	ENST00000346208		400	-/T																																												NEWRECORD																																		
MCL1	0	MSKCC	GRCh37	1	150551866	150551866	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000337-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1430	128	545	0	ENST00000369026.2:c.141G>C	p.Glu47Asp	p.E47D	ENST00000369026	NM_021960.4	47	gaG/gaC																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176721027	176721027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000337-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			495	153	617	0	ENST00000439151.2:c.6658G>A	p.Glu2220Lys	p.E2220K	ENST00000439151	NM_022455.4	2220	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	222	483	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	205	262	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47693918	47693918	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	247	564	0	ENST00000233146.2:c.1632C>G	p.Ile544Met	p.I544M	ENST00000233146	NM_000251.2	544	atC/atG																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117686295	117686295	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	228	408	1	ENST00000368508.3:c.3046C>G	p.Leu1016Val	p.L1016V	ENST00000368508	NM_002944.2	1016	Ctt/Gtt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692968	89692968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	227	285	0	ENST00000371953.3:c.452C>A	p.Ala151Asp	p.A151D	ENST00000371953	NM_000314.4	151	gCc/gAc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842405	68842405	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	276	560	0	ENST00000261769.5:c.466T>A	p.Trp156Arg	p.W156R	ENST00000261769	NM_004360.3	156	Tgg/Agg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29588859	29588859	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	235	466	0	ENST00000358273.4:c.4708G>T	p.Glu1570Ter	p.E1570*	ENST00000358273	NM_001042492.2	1570	Gag/Tag																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160679	56160680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	285	453	1	ENST00000399503.3:c.954dupA	p.Leu319ThrfsTer7	p.L319Tfs*7	ENST00000399503	NM_005921.1	318	tta/ttAa																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0010431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	111	489	1	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27024008	27024008	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	13	50	0	ENST00000324856.7:c.1114C>T	p.Gln372Ter	p.Q372*	ENST00000324856	NM_006015.4	372	Cag/Tag																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67100702	67100702	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	259	555	0	ENST00000412916.2:c.399+1G>T		p.X133_splice	ENST00000412916		133																																													NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68849586	68849586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	291	580	0	ENST00000261769.5:c.1489del	p.Glu497ArgfsTer25	p.E497Rfs*25	ENST00000261769	NM_004360.3	497	Gag/ag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	266	424	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41765474	41765474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	83	409	0	ENST00000301178.4:c.2350C>T	p.Arg784Trp	p.R784W	ENST00000301178	NM_021913.4	784	Cgg/Tgg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11319367	11319367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	151	356	0	ENST00000361445.4:c.100G>A	p.Glu34Lys	p.E34K	ENST00000361445	NM_004958.3	34	Gag/Aag																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156838297	156838297	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1668	332	380	0	ENST00000524377.1:c.575G>T	p.Gly192Val	p.G192V	ENST00000524377	NM_002529.3	192	gGt/gTt																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143191873	143191873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	92	531	1	ENST00000262992.4:c.558G>T	p.Met186Ile	p.M186I	ENST00000262992	NM_001101669.1	186	atG/atT																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1295346	1295346	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	408	326	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151873534	151873534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	230	460	0	ENST00000262189.6:c.9004C>T	p.His3002Tyr	p.H3002Y	ENST00000262189	NM_170606.2	3002	Cac/Tac																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8449725	8449725	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	108	368	0	ENST00000356435.5:c.3988G>C	p.Gly1330Arg	p.G1330R	ENST00000356435		1330	Ggt/Cgt																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110250439	110250439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	420	405	0	ENST00000374672.4:c.236C>T	p.Ala79Val	p.A79V	ENST00000374672	NM_004235.4	79	gCc/gTc																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135787747	135787747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	116	440	1	ENST00000298552.3:c.835C>T	p.His279Tyr	p.H279Y	ENST00000298552	NM_001162426.1	279	Cac/Tac																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28599040	28599040	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	76	440	0	ENST00000241453.7:c.2248G>T	p.Asp750Tyr	p.D750Y	ENST00000241453	NM_004119.2	750	Gat/Tat																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78820353	78820353	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	828	433	0	ENST00000306801.3:c.1293A>C	p.Glu431Asp	p.E431D	ENST00000306801	NM_020761.2	431	gaA/gaC																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10600512	10600512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	162	313	0	ENST00000171111.5:c.1343A>G	p.Asp448Gly	p.D448G	ENST00000171111	NM_203500.1	448	gAt/gGt																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9561484	9561484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	114	337	2	ENST00000353224.5:c.298C>A	p.Leu100Ile	p.L100I	ENST00000353224	NM_177990.2	100	Cta/Ata																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151884332	151884365	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATATTCATGGCTTACCAGGGAATTCTTCCTTTAA	ATATTCATGGCTTACCAGGGAATTCTTCCTTTAA	-			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	46	253	0	ENST00000262189.6:c.4990_5008+15del		p.X1664_splice	ENST00000262189	NM_170606.2	1664																																													NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259395	89259396	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	69	679	0	ENST00000336596.2:c.542dup	p.Leu181PhefsTer47	p.L181Ffs*47	ENST00000336596	NM_005233.5	180	tat/taTt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	36	240	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0010917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	51	183	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																												NEWRECORD																																		
YAP1	0	MSKCC	GRCh37	11	102094434	102094434	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	140	511	0	ENST00000282441.5:c.1114C>T	p.Gln372Ter	p.Q372*	ENST00000282441	NM_001130145.2	372	Cag/Tag																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48027167	48027167	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs140472824		P-0010917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	124	630	0	ENST00000234420.5:c.2045C>G	p.Ser682Cys	p.S682C	ENST00000234420	NM_000179.2	682	tCt/tGt																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41280666	41280666	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	176	658	0	ENST00000349496.5:c.2179G>C	p.Asp727His	p.D727H	ENST00000349496	NM_001904.3	727	Gat/Cat																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1271315	1271315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	76	339	0	ENST00000310581.5:c.2387C>G	p.Ser796Cys	p.S796C	ENST00000310581	NM_198253.2	796	tCc/tGc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89335072	89335072	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0010917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	94	421	0	ENST00000301030.4:c.7807-1G>C		p.X2603_splice	ENST00000301030	NM_001256183.1	2603																																													NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15281634	15281634	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	168	549	4	ENST00000263388.2:c.4739C>T	p.Ser1580Leu	p.S1580L	ENST00000263388	NM_000435.2	1580	tCg/tTg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68849591	68849592	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	152	682	0	ENST00000261769.5:c.1497dup	p.Gly500TrpfsTer37	p.G500Wfs*37	ENST00000261769	NM_004360.3	498	-/T																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120634	115120635	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACCA			P-0010917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1168	191	819	0	ENST00000257566.3:c.368_371dup	p.Ile125GlyfsTer14	p.I125Gfs*14	ENST00000257566	NM_016569.3	124	gtc/gtTGGTc																																												NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	258	365	3	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	211	337	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	466	355	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	333	265	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	215	293	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47103755	47103756	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	379	610	2	ENST00000409792.3:c.6190_6191delGA	p.Asp2064ProfsTer8	p.D2064Pfs*8	ENST00000409792	NM_014159.6	2064	GAc/c																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445041	49445041	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	118	194	0	ENST00000301067.7:c.2425del	p.Gln809ArgfsTer121	p.Q809Rfs*121	ENST00000301067	NM_003482.3	809	Cag/ag																																												NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	9857380	9857380	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	235	362	2	ENST00000330684.3:c.4021del	p.Ser1341AlafsTer56	p.S1341Afs*56	ENST00000330684	NM_001134407.1	1341	Agc/gc																																												NEWRECORD																																		
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	287	366	3	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987																																													NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	239	363	4	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128845224	128845224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	206	228	3	ENST00000249373.3:c.718G>A	p.Val240Ile	p.V240I	ENST00000249373	NM_005631.4	240	Gtc/Atc																																												NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933593	39933594	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	275	456	0	ENST00000378444.4:c.1005dup	p.Ser336LeufsTer45	p.S336Lfs*45	ENST00000378444	NM_001123385.1	335	-/C																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139391799	139391799	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	167	256	0	ENST00000277541.6:c.6392delG	p.Gly2131AlafsTer117	p.G2131Afs*117	ENST00000277541	NM_017617.3	2131	gGc/gc																																												NEWRECORD																																		
CD79A	973	MSKCC	GRCh37	19	42383610	42383610	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	269	417	0	ENST00000221972.3:c.390del	p.Arg131GlyfsTer61	p.R131Gfs*61	ENST00000221972	NM_021601.3	129	Ccc/cc																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37872138	37872138	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs375382055		P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	319	389	1	ENST00000269571.5:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000269571		487	Cgg/Tgg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467434	66467434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	199	333	0	ENST00000273854.3:c.835G>A	p.Glu279Lys	p.E279K	ENST00000273854	NM_004439.5	279	Gaa/Aaa																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100998627	100998629	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	348	494	2	ENST00000325455.5:c.1173_1175del	p.Glu392del	p.E392del	ENST00000325455	NM_001202474.3	391	gaGGAa/gaa																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72241932	72241932	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	947	680	0	ENST00000357731.5:c.458G>C	p.Gly153Ala	p.G153A	ENST00000357731	NM_173808.2	153	gGa/gCa																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37061871	37061871	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	288	423	0	ENST00000231790.2:c.955G>T	p.Glu319Ter	p.E319*	ENST00000231790	NM_000249.3	319	Gag/Tag																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37083782	37083782	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	277	505	0	ENST00000231790.2:c.1691T>G	p.Leu564Arg	p.L564R	ENST00000231790	NM_000249.3	564	cTc/cGc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142204053	142204053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	254	442	0	ENST00000350721.4:c.6150G>A	p.Met2050Ile	p.M2050I	ENST00000350721	NM_001184.3	2050	atG/atA																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56184179	56184179	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	173	310	3	ENST00000399503.3:c.4384T>A	p.Phe1462Ile	p.F1462I	ENST00000399503	NM_005921.1	1462	Ttt/Att																																												NEWRECORD																																		
HIST1H3C	0	MSKCC	GRCh37	6	26046015	26046015	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	514	614	0	ENST00000540144.1:c.377A>G	p.Gln126Arg	p.Q126R	ENST00000540144	NM_003531.2	126	cAg/cGg																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97869517	97869517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	280	408	1	ENST00000289081.3:c.1364C>T	p.Ala455Val	p.A455V	ENST00000289081	NM_000136.2	455	gCa/gTa																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100920714	100920714	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	329	631	1	ENST00000325455.5:c.2434C>T	p.Gln812Ter	p.Q812*	ENST00000325455	NM_001202474.3	812	Caa/Taa																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4385279	4385279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	305	355	0	ENST00000261254.3:c.304G>A	p.Gly102Ser	p.G102S	ENST00000261254	NM_001759.3	102	Ggt/Agt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49433346	49433346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	125	222	0	ENST00000301067.7:c.8101C>T	p.Arg2701Trp	p.R2701W	ENST00000301067	NM_003482.3	2701	Cgg/Tgg																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56489583	56489583	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	256	365	1	ENST00000267101.3:c.2048G>T	p.Arg683Leu	p.R683L	ENST00000267101	NM_001982.3	683	cGg/cTg																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21562052	21562052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	462	576	2	ENST00000382592.4:c.1867C>T	p.Arg623Trp	p.R623W	ENST00000382592	NM_014572.2	623	Cgg/Tgg																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21562820	21562820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	243	297	0	ENST00000382592.4:c.1099G>A	p.Val367Ile	p.V367I	ENST00000382592	NM_014572.2	367	Gtc/Atc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821604	72821604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	103	94	0	ENST00000268489.5:c.10571G>A	p.Gly3524Asp	p.G3524D	ENST00000268489	NM_006885.3	3524	gGc/gAc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72984745	72984745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	386	501	0	ENST00000268489.5:c.2839T>C	p.Cys947Arg	p.C947R	ENST00000268489	NM_006885.3	947	Tgc/Cgc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991484	72991484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	605	679	1	ENST00000268489.5:c.2561C>T	p.Pro854Leu	p.P854L	ENST00000268489	NM_006885.3	854	cCc/cTc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991976	72991976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	405	546	0	ENST00000268489.5:c.2069T>C	p.Met690Thr	p.M690T	ENST00000268489	NM_006885.3	690	aTg/aCg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70118955	70118955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	322	408	0	ENST00000245479.2:c.527C>T	p.Pro176Leu	p.P176L	ENST00000245479	NM_000346.3	176	cCg/cTg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2189768	2189768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	402	525	1	ENST00000398665.3:c.238C>T	p.Arg80Cys	p.R80C	ENST00000398665	NM_032482.2	80	Cgt/Tgt																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9770523	9770523	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	676	442	0	ENST00000377346.4:c.13del	p.Val5TrpfsTer28	p.V5Wfs*28	ENST00000377346	NM_005026.3	4	Ggg/gg																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100909922	100909924	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	355	552	0	ENST00000325455.5:c.2725_2727del	p.Met909del	p.M909del	ENST00000325455	NM_001202474.3	909	ATG/-																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142286928	142286929	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	151	384	0	ENST00000350721.4:c.127dup	p.Arg43ProfsTer18	p.R43Pfs*18	ENST00000350721	NM_001184.3	43	cgg/cCgg																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41243514	41243516	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	345	532	0	ENST00000357654.3:c.4032_4034del	p.Asp1344del	p.D1344del	ENST00000357654	NM_007294.3	1344	gaTGAa/gaa																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8074363	8074363	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	711	524	0	ENST00000377482.5:c.296delC	p.Pro99GlnfsTer22	p.P99Qfs*22	ENST00000377482	NM_018948.3	99	cCa/ca																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63850990	63850990	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	212	337	0	ENST00000279873.7:c.1771del	p.Gln591LysfsTer38	p.Q591Kfs*38	ENST00000279873	NM_032199.2	590	Ccc/cc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118307279	118307281	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	16	22	0	ENST00000534358.1:c.63_65del	p.Gly23del	p.G23del	ENST00000534358	NM_005933.3	18	GGC/-																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40468879	40468879	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	363	434	2	ENST00000264657.5:c.2185delC	p.Arg729AlafsTer3	p.R729Afs*3	ENST00000264657	NM_139276.2	729	Cgc/gc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	61	341	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0008400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	41	281	1	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	112	363	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	107	256	1	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	156	499	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	132	519	8	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	45	416	1	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	124	408	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101268	27101268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	168	506	1	ENST00000324856.7:c.4555del	p.Gln1519ArgfsTer8	p.Q1519Rfs*8	ENST00000324856	NM_006015.4	1517	gCc/gc																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17131402	17131402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	188	450	3	ENST00000285071.4:c.50G>A	p.Arg17His	p.R17H	ENST00000285071	NM_144997.5	17	cGc/cAc																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	137	464	1	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	35	499	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91310208	91310208	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs747341586		P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	129	304	1	ENST00000355112.3:c.2268del	p.Asp757ThrfsTer4	p.D757Tfs*4	ENST00000355112	NM_000057.2	754	tcA/tc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991961	72991961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	41	358	0	ENST00000268489.5:c.2084C>T	p.Pro695Leu	p.P695L	ENST00000268489	NM_006885.3	695	cCg/cTg																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206658404	206658404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	33	397	1	ENST00000367120.3:c.1498C>T	p.Arg500Trp	p.R500W	ENST00000367120	NM_014002.3	500	Cgg/Tgg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16264500	16264500	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	159	489	0	ENST00000375759.3:c.10703C>T	p.Thr3568Met	p.T3568M	ENST00000375759	NM_015001.2	3568	aCg/aTg																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36932275	36932275	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	171	594	0	ENST00000361632.4:c.2194del	p.Asp732ThrfsTer70	p.D732Tfs*70	ENST00000361632		732	Gac/ac																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65307276	65307277	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	87	294	0	ENST00000342505.4:c.2411_2412del	p.Arg804IlefsTer3	p.R804Ifs*3	ENST00000342505	NM_002227.2	804	aGA/a																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72400932	72400932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	99	335	0	ENST00000357731.5:c.239C>T	p.Ala80Val	p.A80V	ENST00000357731	NM_173808.2	80	gCg/gTg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70446321	70446321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			590	173	429	0	ENST00000373644.4:c.5261C>T	p.Ser1754Phe	p.S1754F	ENST00000373644	NM_030625.2	1754	tCt/tTt																																												NEWRECORD																																		
CCND1	0	MSKCC	GRCh37	11	69466040	69466040	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	205	600	0	ENST00000227507.2:c.878T>A	p.Val293Glu	p.V293E	ENST00000227507	NM_053056.2	293	gTg/gAg																																												NEWRECORD																																		
FGF19	0	MSKCC	GRCh37	11	69518529	69518529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	145	335	0	ENST00000294312.3:c.116G>A	p.Gly39Asp	p.G39D	ENST00000294312	NM_005117.2	39	gGc/gAc																																												NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71948209	71948209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			922	241	879	1	ENST00000298229.2:c.2927del	p.Pro976HisfsTer155	p.P976Hfs*155	ENST00000298229	NM_001567.3	974	gCc/gc																																												NEWRECORD																																		
INPPL1	3636	MSKCC	GRCh37	11	71948748	71948748	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs764259451		P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	226	536	1	ENST00000298229.2:c.3466del	p.Arg1156GlyfsTer46	p.R1156Gfs*46	ENST00000298229	NM_001567.3	1154	Ccc/cc																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121437380	121437380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	103	598	0	ENST00000257555.6:c.1718C>T	p.Ala573Val	p.A573V	ENST00000257555		573	gCc/gTc																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7132271	7132271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	34	426	2	ENST00000302850.5:c.2740C>T	p.Arg914Cys	p.R914C	ENST00000302850	NM_000208.2	914	Cgt/Tgt																																												NEWRECORD																																		
SOS1	0	MSKCC	GRCh37	2	39250215	39250215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	172	667	0	ENST00000402219.2:c.1354C>A	p.Arg452Ser	p.R452S	ENST00000402219	NM_005633.3	452	Cgt/Agt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248638	212248638	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	107	390	0	ENST00000342788.4:c.3629A>G	p.Asn1210Ser	p.N1210S	ENST00000342788	NM_005235.2	1210	aAc/aGc																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119562149	119562149	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149631706		P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	33	287	0	ENST00000316626.5:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000316626		396	cGg/cAg																																												NEWRECORD																																		
MSH3	4437	MSKCC	GRCh37	5	79970915	79970915	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1347191023		P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	106	530	4	ENST00000265081.6:c.1148del	p.Lys383ArgfsTer32	p.K383Rfs*32	ENST00000265081	NM_002439.4	381	Aaa/aa																																												NEWRECORD																																		
STK19	0	MSKCC	GRCh37	6	31948313	31948313	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	117	440	0	ENST00000375331.2:c.889T>A	p.Tyr297Asn	p.Y297N	ENST00000375331	NM_004197.1	297	Tac/Aac																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6031676	6031676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	128	490	0	ENST00000265849.7:c.916G>A	p.Val306Met	p.V306M	ENST00000265849	NM_000535.5	306	Gtg/Atg																																												NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27213538	27213538	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014388-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	137	469	0	ENST00000380036.4:c.2938del	p.Ile980Ter	p.I980*	ENST00000380036	NM_000459.3	978	gcA/gc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1640	337	340	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48937070	48937093	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GAACATGAATGTAATATAGATGAG	GAACATGAATGTAATATAGATGAG	-			P-0009346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	253	309	0	ENST00000267163.4:c.839_861+1del		p.EHECNIDEdel	ENST00000267163	NM_000321.2	280	GAACATGAATGTAATATAGATGAG/-																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073546	8073547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	674	597	0	ENST00000377482.5:c.1112dup	p.Ser372IlefsTer4	p.S372Ifs*4	ENST00000377482	NM_018948.3	371	gga/ggGa																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36421257	36421257	+	5_prime_UTR_variant	5'UTR	DEL	T	T	-			P-0009346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	143	112	0	ENST00000300305.3:c.-61delA		p.*21*	ENST00000300305																																															NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55242467	55242481	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	TCC			P-0009346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	734	307	0	ENST00000275493.2:c.2237_2251delinsTCC	p.Glu746_Thr751delinsValPro	p.E746_T751delinsVP	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gTCCca																																												NEWRECORD																																		
MYD88	0	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	41	490	2	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15272207	15272207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	30	242	0	ENST00000263388.2:c.6232C>T	p.Arg2078Trp	p.R2078W	ENST00000263388	NM_000435.2	2078	Cgg/Tgg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577523	7577524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	124	553	0	ENST00000269305.4:c.757dup	p.Thr253AsnfsTer11	p.T253Nfs*11	ENST00000269305	NM_001126112.2	253	acc/aAcc																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717769	89717770	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	15	227	0	ENST00000371953.3:c.800dup	p.Asp268GlyfsTer30	p.D268Gfs*30	ENST00000371953	NM_000314.4	265	cta/ctAa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	78	224	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0003048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	84	597	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47059214	47059214	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141852778		P-0003048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	33	326	0	ENST00000409792.3:c.7447G>A	p.Val2483Ile	p.V2483I	ENST00000409792	NM_014159.6	2483	Gtc/Atc																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2958219	2958219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	41	376	0	ENST00000396946.4:c.2513C>T	p.Ala838Val	p.A838V	ENST00000396946	NM_032415.4	838	gCc/gTc																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102195276	102195276	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	151	745	1	ENST00000263464.3:c.36T>G	p.Asn12Lys	p.N12K	ENST00000263464	NM_001165.4	12	aaT/aaG																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18276969	18276969	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	12	308	0	ENST00000222254.8:c.1417-1G>A		p.X473_splice	ENST00000222254	NM_005027.3	473																																													NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100315	27100315	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	104	573	0	ENST00000324856.7:c.4028delT	p.Phe1343SerfsTer138	p.F1343Sfs*138	ENST00000324856	NM_006015.4	1343	Ttc/tc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831196	72831197	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGC			P-0003048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	38	798	0	ENST00000268489.5:c.5382_5384dup	p.Gln1794dup	p.Q1794dup	ENST00000268489	NM_006885.3	1794	cac/caGCAc																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162746002	162746002	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	440	495	1	ENST00000367921.3:c.2125C>T	p.Arg709Ter	p.R709*	ENST00000367921	NM_006182.2	709	Cga/Tga																																												NEWRECORD																																		
EIF4E	0	MSKCC	GRCh37	4	99808283	99808283	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	167	330	0	ENST00000280892.6:c.406A>G	p.Thr136Ala	p.T136A	ENST00000280892	NM_001130678.1	136	Aca/Gca																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38271707	38271707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3018	1449	475	0	ENST00000425967.3:c.2242C>T	p.His748Tyr	p.H748Y	ENST00000425967	NM_001174067.1	748	Cac/Tac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			13	287	309	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42799129	42799129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139613152		P-0003430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	276	275	0	ENST00000575354.2:c.4613C>T	p.Pro1538Leu	p.P1538L	ENST00000575354	NM_015125.3	1538	cCg/cTg																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29095875	29095875	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	616	592	0	ENST00000328354.6:c.959A>G	p.Lys320Arg	p.K320R	ENST00000328354	NM_007194.3	320	aAa/aGa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49440517	49440518	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	490	480	0	ENST00000301067.7:c.4292dup	p.Val1432GlyfsTer15	p.V1432Gfs*15	ENST00000301067	NM_003482.3	1431	gag/gaAg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108186599	108186599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	1281	408	0	ENST00000278616.4:c.6056A>G	p.Tyr2019Cys	p.Y2019C	ENST00000278616	NM_000051.3	2019	tAt/tGt																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26068405	26068405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	451	409	3	ENST00000435504.4:c.85A>G	p.Met29Val	p.M29V	ENST00000435504		29	Atg/Gtg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49440468	49440468	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	438	450	0	ENST00000301067.7:c.4342T>C	p.Cys1448Arg	p.C1448R	ENST00000301067	NM_003482.3	1448	Tgt/Cgt																																												NEWRECORD																																		
EP300	2033	MSKCC	GRCh37	22	41551058	41551058	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	523	607	0	ENST00000263253.7:c.3202C>T	p.Gln1068Ter	p.Q1068*	ENST00000263253	NM_001429.3	1068	Cag/Tag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44949128	44949129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0005356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	630	307	0	ENST00000377967.4:c.3691_3692dup	p.Gly1232LeufsTer34	p.G1232Lfs*34	ENST00000377967	NM_021140.2	1230	gct/gcTAt																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47426173	47426174	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCCAGGT			P-0005356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	403	264	0	ENST00000377045.4:c.694_699+2dup		p.-231fs	ENST00000377045	NM_001654.4	231	-/ATCCAGGT																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56478853	56478854	+	missense_variant	Missense_Mutation	DNP	CG	CG	AT			P-0005356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	1097	608	1	ENST00000267101.3:c.309_310delinsAT	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	103	cgCGtg/cgATtg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0004810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	95	405	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0004810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	84	341	0	ENST00000269305.4:c.559+1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187																																													NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32907428	32907428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	88	436	0	ENST00000380152.3:c.1813A>G	p.Ile605Val	p.I605V	ENST00000380152		605	Ata/Gta																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30321582	30321583	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0004810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	66	354	0	ENST00000322652.5:c.1438dup	p.Tyr480LeufsTer7	p.Y480Lfs*7	ENST00000322652	NM_015355.2	479	-/T																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	159	409	2	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	125	327	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	100	250	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																												NEWRECORD																																		
GRIN2A	2903	MSKCC	GRCh37	16	10274172	10274173	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	95	306	0	ENST00000330684.3:c.96dup	p.Ala33ArgfsTer105	p.A33Rfs*105	ENST00000330684	NM_001134407.1	32	-/C																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	175958550	175958550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	43	493	0	ENST00000367669.3:c.1795C>T	p.Arg599Cys	p.R599C	ENST00000367669	NM_022457.5	599	Cgt/Tgt																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49027168	49027168	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	168	487	0	ENST00000267163.4:c.1735C>T	p.Arg579Ter	p.R579*	ENST00000267163	NM_000321.2	579	Cga/Tga																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	194	417	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47630472	47630472	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	143	368	0	ENST00000233146.2:c.142G>T	p.Glu48Ter	p.E48*	ENST00000233146	NM_000251.2	48	Gag/Tag																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48026203	48026203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	162	338	1	ENST00000234420.5:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000234420	NM_000179.2	361	Cgc/Tgc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189587130	189587130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	138	394	0	ENST00000264731.3:c.1147C>T	p.His383Tyr	p.H383Y	ENST00000264731	NM_003722.4	383	Cat/Tat																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539924	187539924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	177	388	0	ENST00000441802.2:c.7816G>A	p.Gly2606Arg	p.G2606R	ENST00000441802	NM_005245.3	2606	Ggg/Agg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151902290	151902290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	38	116	0	ENST00000262189.6:c.3862C>T	p.Arg1288Trp	p.R1288W	ENST00000262189	NM_170606.2	1288	Cgg/Tgg																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852251	63852251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137983907		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	148	353	0	ENST00000279873.7:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000279873	NM_032199.2	1010	cGg/cAg																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114911639	114911639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	174	392	0	ENST00000543371.1:c.1157G>A	p.Arg386Gln	p.R386Q	ENST00000543371	NM_001198531.1	386	cGg/cAg																																												NEWRECORD																																		
RPS6KB2	0	MSKCC	GRCh37	11	67201702	67201702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	153	424	0	ENST00000312629.5:c.1003G>A	p.Asp335Asn	p.D335N	ENST00000312629	NM_003952.2	335	Gac/Aac																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	11905490	11905490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	80	208	0	ENST00000396373.4:c.140C>T	p.Ser47Leu	p.S47L	ENST00000396373	NM_001987.4	47	tCg/tTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49433066	49433066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	180	443	0	ENST00000301067.7:c.8305G>A	p.Asp2769Asn	p.D2769N	ENST00000301067	NM_003482.3	2769	Gat/Aat																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57865573	57865573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	213	618	1	ENST00000228682.2:c.3050G>A	p.Gly1017Asp	p.G1017D	ENST00000228682	NM_005269.2	1017	gGc/gAc																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	341230	341230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	182	455	0	ENST00000262320.3:c.2254G>A	p.Val752Met	p.V752M	ENST00000262320	NM_003502.3	752	Gtg/Atg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81944214	81944214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	183	629	0	ENST00000359376.3:c.1823G>A	p.Ser608Asn	p.S608N	ENST00000359376	NM_002661.3	608	aGc/aAc																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120179	70120179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	97	237	0	ENST00000245479.2:c.1181G>A	p.Arg394Gln	p.R394Q	ENST00000245479	NM_000346.3	394	cGa/cAa																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5223131	5223131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	137	455	0	ENST00000357368.4:c.2672C>T	p.Thr891Met	p.T891M	ENST00000357368	NM_002850.3	891	aCg/aTg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5265138	5265138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	177	453	1	ENST00000357368.4:c.449G>T	p.Arg150Leu	p.R150L	ENST00000357368	NM_002850.3	150	cGg/cTg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410223	63410223	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	309	251	0	ENST00000330258.3:c.2944A>G	p.Arg982Gly	p.R982G	ENST00000330258	NM_152424.3	982	Agg/Ggg																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637918	176637920	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	152	332	0	ENST00000439151.2:c.2520_2522del	p.Asn841del	p.N841del	ENST00000439151	NM_022455.4	840	AAC/-																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591122	67591130	+	inframe_deletion	In_Frame_Del	DEL	AGCTGAGAA	AGCTGAGAA	-			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	89	249	0	ENST00000274335.5:c.1717_1725delCTGAGAAAG	p.Leu573_Lys575del	p.L573_K575del	ENST00000274335		572	cAGCTGAGAAag/cag																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71101751	71101751	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	120	313	0	ENST00000318789.4:c.447del	p.Lys149AsnfsTer57	p.K149Nfs*57	ENST00000318789	NM_032682.5	149	aaA/aa																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133208958	133208958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	126	407	1	ENST00000320574.5:c.6273del	p.Gly2092ValfsTer31	p.G2092Vfs*31	ENST00000320574	NM_006231.2	2091	ccC/cc																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49428410	49428411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1284500089		P-0003665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	138	421	0	ENST00000301067.7:c.10394dup	p.Pro3466ThrfsTer2	p.P3466Tfs*2	ENST00000301067	NM_003482.3	3465	gga/ggGa																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53223866	53223866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	136	688	1	ENST00000375401.3:c.3493C>T	p.Arg1165Cys	p.R1165C	ENST00000375401	NM_004187.3	1165	Cgt/Tgt																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44921916	44921916	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	90	532	0	ENST00000377967.4:c.1450A>G	p.Arg484Gly	p.R484G	ENST00000377967	NM_021140.2	484	Aga/Gga																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111502	8111503	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	257	580	0	ENST00000346208.3:c.990dupG	p.Asn331GlufsTer21	p.N331Efs*21	ENST00000346208		330	agg/aGgg																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138402603	138402603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	50	422	0	ENST00000289153.2:c.2342C>G	p.Ser781Cys	p.S781C	ENST00000289153	NM_006219.2	781	tCc/tGc																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2974191	2974191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	110	719	2	ENST00000396946.4:c.1414C>G	p.Gln472Glu	p.Q472E	ENST00000396946	NM_032415.4	472	Caa/Gaa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435596	18435596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	65	289	0	ENST00000266497.5:c.581G>C	p.Arg194Thr	p.R194T	ENST00000266497		194	aGg/aCg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133226412	133226412	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200114024		P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	82	640	0	ENST00000320574.5:c.3646G>A	p.Gly1216Ser	p.G1216S	ENST00000320574	NM_006231.2	1216	Ggc/Agc																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28626758	28626758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	74	422	1	ENST00000241453.7:c.538G>T	p.Asp180Tyr	p.D180Y	ENST00000241453	NM_004119.2	180	Gac/Tac																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32893363	32893363	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	123	353	0	ENST00000380152.3:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000380152		73	Cag/Tag																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89355041	89355041	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	481	1047	0	ENST00000301030.4:c.639C>G	p.Tyr213Ter	p.Y213*	ENST00000301030	NM_001256183.1	213	taC/taG																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18273832	18273832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	134	660	0	ENST00000222254.8:c.1165T>C	p.Phe389Leu	p.F389L	ENST00000222254	NM_005027.3	389	Ttc/Ctc																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31021452	31021452	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	86	411	0	ENST00000375687.4:c.1451A>G	p.Glu484Gly	p.E484G	ENST00000375687	NM_015338.5	484	gAg/gGg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100144	27100145	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGACTCGGGGATGTATTCTCCTAG			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	96	507	0	ENST00000324856.7:c.3942_3966dup	p.Tyr1324LeufsTer7	p.Y1324Lfs*7	ENST00000324856	NM_006015.4	1314	cca/cCAGACTCGGGGATGTATTCTCCTAGca																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18266797	18266817	+	inframe_deletion	In_Frame_Del	DEL	GGCCTTGCAGGCGCTGGGCGT	GGCCTTGCAGGCGCTGGGCGT	-			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	85	359	1	ENST00000222254.8:c.112_132del	p.Leu38_Ala44del	p.L38_A44del	ENST00000222254	NM_005027.3	36	gcGGCCTTGCAGGCGCTGGGCGTg/gcg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023574	27023580	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCTA	CGGCCTA	-			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	91	654	0	ENST00000324856.7:c.682_688del	p.Ala228ArgfsTer2	p.A228Rfs*2	ENST00000324856	NM_006015.4	227	cCGGCCTAc/cc																																												NEWRECORD																																		
SRC	0	MSKCC	GRCh37	20	36030928	36030965	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAAAGTGGCGGACTTTGGGCTGGCTCGGCTCATTGA	TGCAAAGTGGCGGACTTTGGGCTGGCTCGGCTCATTGA	GGG			P-0005900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	41	584	0	ENST00000358208.4:c.1207_1244delinsGGG	p.Cys403GlyfsTer4	p.C403Gfs*4	ENST00000358208		403	TGCAAAGTGGCGGACTTTGGGCTGGCTCGGCTCATTGAa/GGGa																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249010	55249011	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACT			P-0010891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	124	350	0	ENST00000275493.2:c.2310_2311insTAC	p.Asp770_Asn771insTyr	p.D770_N771insY	ENST00000275493	NM_005228.3	770	gac/gACTac																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	162	778	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1035	65	824	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41420070	41420070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	38	329	0	ENST00000373198.4:c.251C>A	p.Ser84Tyr	p.S84Y	ENST00000373198	NM_133170.3	84	tCt/tAt																																												NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187446247	187446247	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	79	609	0	ENST00000232014.4:c.1441C>T	p.Gln481Ter	p.Q481*	ENST00000232014	NM_001130845.1	481	Cag/Tag																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81922859	81922859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	63	448	0	ENST00000359376.3:c.848C>A	p.Pro283His	p.P283H	ENST00000359376	NM_002661.3	283	cCt/cAt																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142184028	142184028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	80	389	0	ENST00000350721.4:c.6952G>A	p.Asp2318Asn	p.D2318N	ENST00000350721	NM_001184.3	2318	Gat/Aat																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241682944	241682944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	62	504	0	ENST00000366560.3:c.79G>T	p.Gly27Cys	p.G27C	ENST00000366560	NM_000143.3	27	Ggc/Tgc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11174901	11174901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	72	655	1	ENST00000361445.4:c.7133G>T	p.Arg2378Ile	p.R2378I	ENST00000361445	NM_004958.3	2378	aGa/aTa																																												NEWRECORD																																		
SDHB	0	MSKCC	GRCh37	1	17350465	17350465	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	A			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	99	533	0	ENST00000375499.3:c.642+3G>T		p.X214_splice	ENST00000375499	NM_003000.2	214																																													NEWRECORD																																		
STK40	0	MSKCC	GRCh37	1	36809851	36809851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	78	587	0	ENST00000373129.3:c.754G>C	p.Gly252Arg	p.G252R	ENST00000373129	NM_032017.1	252	Ggc/Cgc																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	71873238	71873238	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	44	420	0	ENST00000357731.5:c.956A>T	p.Gln319Leu	p.Q319L	ENST00000357731	NM_173808.2	319	cAg/cTg																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162729744	162729744	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	60	592	0	ENST00000367921.3:c.830G>T	p.Arg277Leu	p.R277L	ENST00000367921	NM_006182.2	277	cGc/cTc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118352453	118352453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	179	416	0	ENST00000534358.1:c.3658T>C	p.Ser1220Pro	p.S1220P	ENST00000534358	NM_005933.3	1220	Tct/Cct																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49425685	49425685	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	36	571	0	ENST00000301067.7:c.12803G>C	p.Gly4268Ala	p.G4268A	ENST00000301067	NM_003482.3	4268	gGa/gCa																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103515385	103515385	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			365	32	301	0	ENST00000355739.4:c.1886A>G	p.Gln629Arg	p.Q629R	ENST00000355739	NM_000123.3	629	cAg/cGg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42000370	42000370	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	151	479	0	ENST00000219905.7:c.2389G>T	p.Gly797Ter	p.G797*	ENST00000219905	NM_001164273.1	797	Gga/Tga																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29508804	29508804	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	81	394	0	ENST00000358273.4:c.730+1G>T		p.X244_splice	ENST00000358273	NM_001042492.2	244																																													NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533820	63533820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	75	495	0	ENST00000307078.5:c.1334G>A	p.Arg445Lys	p.R445K	ENST00000307078	NM_004655.3	445	aGg/aAg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78854237	78854237	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	88	521	0	ENST00000306801.3:c.1532A>G	p.Lys511Arg	p.K511R	ENST00000306801	NM_020761.2	511	aAg/aGg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10600393	10600393	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			852	128	893	3	ENST00000171111.5:c.1462G>T	p.Glu488Ter	p.E488*	ENST00000171111	NM_203500.1	488	Gag/Tag																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17954608	17954608	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	92	922	0	ENST00000458235.1:c.286C>T	p.Gln96Ter	p.Q96*	ENST00000458235	NM_000215.3	96	Caa/Taa																																												NEWRECORD																																		
CCNE1	0	MSKCC	GRCh37	19	30308054	30308054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	84	516	0	ENST00000262643.3:c.191A>G	p.Asn64Ser	p.N64S	ENST00000262643	NM_001238.2	64	aAt/aGt																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41727962	41727962	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	40	462	0	ENST00000301178.4:c.586+1G>T		p.X196_splice	ENST00000301178	NM_021913.4	196																																													NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50909730	50909730	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	48	879	0	ENST00000440232.2:c.1450G>T	p.Glu484Ter	p.E484*	ENST00000440232	NM_002691.3	484	Gag/Tag																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25990569	25990569	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	87	521	0	ENST00000435504.4:c.658G>T	p.Gly220Ter	p.G220*	ENST00000435504		220	Gga/Tga																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248565	212248565	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			619	60	489	0	ENST00000342788.4:c.3702del	p.Ala1236ArgfsTer55	p.A1236Rfs*55	ENST00000342788	NM_005235.2	1234	aaG/aa																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546787	9546787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	34	245	0	ENST00000353224.5:c.1235C>T	p.Pro412Leu	p.P412L	ENST00000353224	NM_177990.2	412	cCg/cTg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40757469	40757469	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	80	612	0	ENST00000373198.4:c.2829C>G	p.Tyr943Ter	p.Y943*	ENST00000373198	NM_133170.3	943	taC/taG																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40877381	40877381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	73	538	0	ENST00000373198.4:c.2315G>T	p.Gly772Val	p.G772V	ENST00000373198	NM_133170.3	772	gGc/gTc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41514533	41514533	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			766	74	619	1	ENST00000373198.4:c.128A>G	p.Tyr43Cys	p.Y43C	ENST00000373198	NM_133170.3	43	tAt/tGt																																												NEWRECORD																																		
MAPK1	0	MSKCC	GRCh37	22	22221685	22221685	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	65	301	2	ENST00000215832.6:c.46G>T	p.Gly16Trp	p.G16W	ENST00000215832	NM_002745.4	16	Ggg/Tgg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294258	1294258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			687	81	730	0	ENST00000310581.5:c.743G>C	p.Arg248Pro	p.R248P	ENST00000310581	NM_198253.2	248	cGg/cCg																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149515208	149515208	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs141870925		P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	91	658	0	ENST00000261799.4:c.274G>T	p.Gly92Trp	p.G92W	ENST00000261799	NM_002609.3	92	Ggg/Tgg																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	394966	394966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			576	99	524	0	ENST00000380956.4:c.362C>T	p.Pro121Leu	p.P121L	ENST00000380956	NM_001195286.1	121	cCg/cTg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32187989	32187989	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	124	743	1	ENST00000375023.3:c.1232C>A	p.Pro411His	p.P411H	ENST00000375023	NM_004557.3	411	cCc/cAc																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137519428	137519428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	28	196	0	ENST00000367739.4:c.1210G>C	p.Glu404Gln	p.E404Q	ENST00000367739	NM_000416.2	404	Gag/Cag																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157469823	157469823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	116	577	1	ENST00000346085.5:c.2617G>T	p.Gly873Cys	p.G873C	ENST00000346085	NM_020732.3	873	Ggt/Tgt																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81350060	81350060	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	30	359	0	ENST00000222390.5:c.1271+1G>A		p.X424_splice	ENST00000222390	NM_000601.4	424																																													NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	69103989	69103989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			905	49	675	0	ENST00000288368.4:c.4379C>T	p.Pro1460Leu	p.P1460L	ENST00000288368	NM_024870.2	1460	cCa/cTa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8376014	8376014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	48	372	1	ENST00000356435.5:c.4583C>A	p.Pro1528His	p.P1528H	ENST00000356435		1528	cCt/cAt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8465467	8465467	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	47	439	0	ENST00000356435.5:c.3713C>A	p.Ser1238Tyr	p.S1238Y	ENST00000356435		1238	tCt/tAt																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765518	66765518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015018-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	78	776	1	ENST00000374690.3:c.530G>A	p.Cys177Tyr	p.C177Y	ENST00000374690	NM_000044.3	177	tGc/tAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	152	591	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178927977	178927982	+	inframe_deletion	In_Frame_Del	DEL	CACTGT	CACTGT	-			P-0010095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	37	241	0	ENST00000263967.3:c.1256_1261del	p.His419_Cys420del	p.H419_C420del	ENST00000263967	NM_006218.2	419	CACTGT/-																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42035061	42035061	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	101	860	0	ENST00000219905.7:c.4903A>G	p.Thr1635Ala	p.T1635A	ENST00000219905	NM_001164273.1	1635	Aca/Gca																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99478632	99478632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	50	497	0	ENST00000268035.6:c.3274C>T	p.Arg1092Trp	p.R1092W	ENST00000268035	NM_000875.3	1092	Cgg/Tgg																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67063684	67063684	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	204	406	0	ENST00000412916.2:c.133C>T	p.Gln45Ter	p.Q45*	ENST00000412916		45	Cag/Tag																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111471	8111472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGTCAGACCACCACAACCACACTCTGGAGGAGGAATGCCAATGG			P-0010095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	105	420	0	ENST00000346208.3:c.958_1001dup	p.Asp335ValfsTer35	p.D335Vfs*35	ENST00000346208		319	-/TGTCAGACCACCACAACCACACTCTGGAGGAGGAATGCCAATGG																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258001	16258001	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	176	290	0	ENST00000375759.3:c.5266A>G	p.Thr1756Ala	p.T1756A	ENST00000375759	NM_015001.2	1756	Acc/Gcc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16260371	16260371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	30	211	0	ENST00000375759.3:c.7636G>C	p.Ala2546Pro	p.A2546P	ENST00000375759	NM_015001.2	2546	Gcc/Ccc																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	359	296	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215593575	215593575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	68	342	0	ENST00000260947.4:c.2159T>C	p.Val720Ala	p.V720A	ENST00000260947	NM_000465.2	720	gTc/gCc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	13	213	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178338	56178338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	97	364	1	ENST00000399503.3:c.3311C>T	p.Ala1104Val	p.A1104V	ENST00000399503	NM_005921.1	1104	gCt/gTt																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	394998	394998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	124	208	1	ENST00000380956.4:c.394G>T	p.Ala132Ser	p.A132S	ENST00000380956	NM_001195286.1	132	Gcc/Tcc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32168682	32168682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	462	429	2	ENST00000375023.3:c.4241C>T	p.Ala1414Val	p.A1414V	ENST00000375023	NM_004557.3	1414	gCg/gTg																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112024095	112024095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	516	480	0	ENST00000368678.4:c.690T>G	p.His230Gln	p.H230Q	ENST00000368678		230	caT/caG																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90992979	90992979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	241	302	0	ENST00000265433.3:c.463G>A	p.Val155Met	p.V155M	ENST00000265433	NM_002485.4	155	Gtg/Atg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100715	8100715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	151	302	0	ENST00000346208.3:c.689G>A	p.Ser230Asn	p.S230N	ENST00000346208		230	aGc/aAc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43604572	43604572	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs115272158		P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	228	421	0	ENST00000355710.3:c.1157C>T	p.Ala386Val	p.A386V	ENST00000355710	NM_020975.4	386	gCg/gTg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333939	70333939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	150	376	0	ENST00000373644.4:c.1844G>A	p.Ser615Asn	p.S615N	ENST00000373644	NM_030625.2	615	aGc/aAc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720711	89720711	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	39	33	0	ENST00000371953.3:c.862G>T	p.Glu288Ter	p.E288*	ENST00000371953	NM_000314.4	288	Gaa/Taa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	157	316	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49445968	49445968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	53	437	0	ENST00000301067.7:c.1498G>A	p.Glu500Lys	p.E500K	ENST00000301067	NM_003482.3	500	Gag/Aag																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	347909	347909	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	297	519	3	ENST00000262320.3:c.1597C>T	p.Arg533Ter	p.R533*	ENST00000262320	NM_003502.3	533	Cga/Tga																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89877384	89877384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	191	312	0	ENST00000389301.3:c.379G>A	p.Ala127Thr	p.A127T	ENST00000389301	NM_000135.2	127	Gct/Act																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41215905	41215905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	49	465	0	ENST00000357654.3:c.5138T>C	p.Val1713Ala	p.V1713A	ENST00000357654	NM_007294.3	1713	gTa/gCa																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2199893	2199893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	183	452	0	ENST00000398665.3:c.662G>A	p.Gly221Asp	p.G221D	ENST00000398665	NM_032482.2	221	gGc/gAc																																												NEWRECORD																																		
GNA11	0	MSKCC	GRCh37	19	3119235	3119235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	268	418	1	ENST00000078429.4:c.767G>A	p.Arg256Gln	p.R256Q	ENST00000078429	NM_002067.2	256	cGg/cAg																																												NEWRECORD																																		
CALR	0	MSKCC	GRCh37	19	13050380	13050380	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	61	521	0	ENST00000316448.5:c.332A>G	p.Lys111Arg	p.K111R	ENST00000316448	NM_004343.3	111	aAg/aGg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42791043	42791043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	139	237	0	ENST00000575354.2:c.188G>A	p.Ser63Asn	p.S63N	ENST00000575354	NM_015125.3	63	aGc/aAc																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	265	434	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76764089	76764089	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	122	373	0	ENST00000373344.5:c.7219C>T	p.Arg2407Ter	p.R2407*	ENST00000373344	NM_000489.3	2407	Cga/Tga																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151873698	151873698	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	93	246	0	ENST00000262189.6:c.8840del	p.Pro2947HisfsTer12	p.P2947Hfs*12	ENST00000262189	NM_170606.2	2947	cCa/ca																																												NEWRECORD																																		
INPP4B	8821	MSKCC	GRCh37	4	143007332	143007332	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	176	327	2	ENST00000262992.4:c.2452del	p.Arg818GlufsTer4	p.R818Efs*4	ENST00000262992	NM_001101669.1	818	Aga/ga																																												NEWRECORD																																		
CHEK1	1111	MSKCC	GRCh37	11	125505378	125505378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs779447089		P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	238	424	3	ENST00000428830.2:c.676del	p.Thr226HisfsTer14	p.T226Hfs*14	ENST00000428830	NM_001114121.2	223	gAa/ga																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49436939	49436939	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	230	421	0	ENST00000301067.7:c.5564del	p.Pro1855GlnfsTer21	p.P1855Qfs*21	ENST00000301067	NM_003482.3	1855	cCa/ca																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73337684	73337684	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	181	358	5	ENST00000377767.4:c.2032delA	p.Ile678PhefsTer59	p.I678Ffs*59	ENST00000377767	NM_014953.3	678	Att/tt																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	122	337	0	ENST00000318789.4:c.1240delC	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65306997	65306997	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	233	436	0	ENST00000342505.4:c.2580del	p.Lys860AsnfsTer16	p.K860Nfs*16	ENST00000342505	NM_002227.2	860	aaA/aa																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325832	65325833	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs755650243		P-0009985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	168	276	0	ENST00000342505.4:c.1289dup	p.Leu431ValfsTer22	p.L431Vfs*22	ENST00000342505	NM_002227.2	430	ccg/ccCg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38963090	38963090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1102	171	489	2	ENST00000357387.3:c.1454G>A	p.Arg485Gln	p.R485Q	ENST00000357387	NM_152756.3	485	cGa/cAa																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38950625	38950626	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1404	253	611	0	ENST00000357387.3:c.3324dup	p.His1109ThrfsTer3	p.H1109Tfs*3	ENST00000357387	NM_152756.3	1108	-/A																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	83	492	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	39	634	1	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117962	70117963	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	G			P-0013319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	24	245	0	ENST00000245479.2:c.431+1dup		p.R144fs	ENST00000245479	NM_000346.3	144	aga/aGga																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49427501	49427502	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0013319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	48	762	0	ENST00000301067.7:c.10986_10987delinsTT	p.Met3662_Ala3663delinsIleSer	p.M3662_A3663delinsIS	ENST00000301067	NM_003482.3	3662	atGGca/atTTca																																												NEWRECORD																																		
TNFRSF14	0	MSKCC	GRCh37	1	2493197	2493197	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145758620		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	240	811	5	ENST00000355716.4:c.637G>A	p.Val213Ile	p.V213I	ENST00000355716	NM_003820.2	213	Gtc/Atc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11199369	11199369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	137	579	1	ENST00000361445.4:c.5122G>A	p.Ala1708Thr	p.A1708T	ENST00000361445	NM_004958.3	1708	Gcc/Acc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11303220	11303220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	186	672	1	ENST00000361445.4:c.1363G>A	p.Val455Met	p.V455M	ENST00000361445	NM_004958.3	455	Gtg/Atg																																												NEWRECORD																																		
SDHB	0	MSKCC	GRCh37	1	17350493	17350493	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	146	556	0	ENST00000375499.3:c.617A>G	p.Tyr206Cys	p.Y206C	ENST00000375499	NM_003000.2	206	tAt/tGt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	248	774	1	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																												NEWRECORD																																		
MYCL1	0	MSKCC	GRCh37	1	40363069	40363069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	182	632	1	ENST00000397332.2:c.1160G>T	p.Arg387Ile	p.R387I	ENST00000397332	NM_001033082.2	387	aGa/aTa																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65304164	65304164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	150	704	0	ENST00000342505.4:c.2951C>T	p.Ala984Val	p.A984V	ENST00000342505	NM_002227.2	984	gCc/gTc																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	71873245	71873245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	247	880	0	ENST00000357731.5:c.949A>G	p.Thr317Ala	p.T317A	ENST00000357731	NM_173808.2	317	Aca/Gca																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78428507	78428507	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	174	554	1	ENST00000370768.2:c.1292G>T	p.Gly431Val	p.G431V	ENST00000370768	NM_003902.3	431	gGc/gTc																																												NEWRECORD																																		
BCL10	0	MSKCC	GRCh37	1	85736574	85736574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	196	766	1	ENST00000370580.1:c.73C>T	p.Arg25Cys	p.R25C	ENST00000370580	NM_003921.4	25	Cgt/Tgt																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115252246	115252246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	219	726	1	ENST00000369535.4:c.394G>A	p.Glu132Lys	p.E132K	ENST00000369535	NM_002524.4	132	Gaa/Aaa																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162724625	162724625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	146	587	1	ENST00000367921.3:c.397C>T	p.Arg133Trp	p.R133W	ENST00000367921	NM_006182.2	133	Cgg/Tgg																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162724978	162724978	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	229	812	0	ENST00000367921.3:c.450T>G	p.Ile150Met	p.I150M	ENST00000367921	NM_006182.2	150	atT/atG																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162729743	162729743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	140	517	0	ENST00000367921.3:c.829C>T	p.Arg277Cys	p.R277C	ENST00000367921	NM_006182.2	277	Cgc/Tgc																																												NEWRECORD																																		
HIST3H3	0	MSKCC	GRCh37	1	228612648	228612648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1346	292	1194	0	ENST00000366696.1:c.379C>A	p.Leu127Met	p.L127M	ENST00000366696	NM_003493.2	127	Ctg/Atg																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243708859	243708859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	108	540	0	ENST00000263826.5:c.1204C>T	p.His402Tyr	p.H402Y	ENST00000263826	NM_005465.4	402	Cac/Tac																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243716083	243716083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	106	600	0	ENST00000263826.5:c.1111T>C	p.Ser371Pro	p.S371P	ENST00000263826	NM_005465.4	371	Tca/Cca																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243736329	243736329	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	134	567	1	ENST00000263826.5:c.718G>T	p.Glu240Ter	p.E240*	ENST00000263826	NM_005465.4	240	Gag/Tag																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16082763	16082763	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	31	95	0	ENST00000281043.3:c.577T>A	p.Phe193Ile	p.F193I	ENST00000281043	NM_005378.4	193	Ttc/Atc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29519920	29519920	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	135	477	0	ENST00000389048.3:c.1651C>T	p.Arg551Ter	p.R551*	ENST00000389048	NM_004304.4	551	Cga/Tga																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48033753	48033753	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	112	505	1	ENST00000234420.5:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000234420	NM_000179.2	1322	Gaa/Taa																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	178	659	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99136537	99136537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	123	634	0	ENST00000074304.5:c.26G>A	p.Arg9His	p.R9H	ENST00000074304	NM_001134224.1	9	cGc/cAc																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99172150	99172150	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	178	705	2	ENST00000074304.5:c.1716G>T	p.Lys572Asn	p.K572N	ENST00000074304	NM_001134224.1	572	aaG/aaT																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99182574	99182574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	137	466	0	ENST00000074304.5:c.2377C>T	p.Arg793Ter	p.R793*	ENST00000074304	NM_001134224.1	793	Cga/Tga																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198268478	198268478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	119	559	0	ENST00000335508.6:c.1550G>A	p.Arg517His	p.R517H	ENST00000335508	NM_012433.2	517	cGt/cAt																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198283258	198283258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	162	710	1	ENST00000335508.6:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000335508	NM_012433.2	157	cGa/cAa																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149907	202149907	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	153	564	0	ENST00000358485.4:c.1348A>G	p.Arg450Gly	p.R450G	ENST00000358485	NM_001080125.1	450	Aga/Gga																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251860	212251860	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	99	336	0	ENST00000342788.4:c.3199C>T	p.Arg1067Ter	p.R1067*	ENST00000342788	NM_005235.2	1067	Cga/Tga																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225379426	225379426	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	169	582	1	ENST00000264414.4:c.442C>T	p.Arg148Ter	p.R148*	ENST00000264414	NM_003590.4	148	Cga/Tga																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227660195	227660195	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	157	624	0	ENST00000305123.5:c.3260T>C	p.Val1087Ala	p.V1087A	ENST00000305123	NM_005544.2	1087	gTg/gCg																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227660618	227660618	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	109	436	2	ENST00000305123.5:c.2837T>C	p.Leu946Pro	p.L946P	ENST00000305123	NM_005544.2	946	cTg/cCg																																												NEWRECORD																																		
MYD88	0	MSKCC	GRCh37	3	38180433	38180433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	140	537	0	ENST00000396334.3:c.281G>A	p.Arg94His	p.R94H	ENST00000396334	NM_002468.4	94	cGc/cAc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47058713	47058713	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	166	486	0	ENST00000409792.3:c.7565A>C	p.Lys2522Thr	p.K2522T	ENST00000409792	NM_014159.6	2522	aAg/aCg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47125289	47125289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	219	924	0	ENST00000409792.3:c.5981G>A	p.Arg1994Lys	p.R1994K	ENST00000409792	NM_014159.6	1994	aGg/aAg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47163557	47163557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	83	389	1	ENST00000409792.3:c.2569G>A	p.Gly857Ser	p.G857S	ENST00000409792	NM_014159.6	857	Ggt/Agt																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49721989	49721989	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	40	167	0	ENST00000449682.2:c.1870A>G	p.Thr624Ala	p.T624A	ENST00000449682	NM_020998.3	624	Acc/Gcc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643357	52643357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	157	638	0	ENST00000394830.3:c.2539G>A	p.Val847Ile	p.V847I	ENST00000394830	NM_018313.4	847	Gta/Ata																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52677301	52677301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	224	778	1	ENST00000394830.3:c.958C>A	p.Leu320Ile	p.L320I	ENST00000394830	NM_018313.4	320	Ctt/Att																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71027117	71027117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	156	484	0	ENST00000318789.4:c.1210C>T	p.Pro404Ser	p.P404S	ENST00000318789	NM_032682.5	404	Cct/Tct																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71096117	71096117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	121	471	2	ENST00000318789.4:c.640C>A	p.Leu214Ile	p.L214I	ENST00000318789	NM_032682.5	214	Ctt/Att																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72861918	72861918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	121	521	0	ENST00000325599.8:c.964G>A	p.Val322Met	p.V322M	ENST00000325599	NM_018130.2	322	Gtg/Atg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89391126	89391126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	137	583	0	ENST00000336596.2:c.1192G>T	p.Asp398Tyr	p.D398Y	ENST00000336596	NM_005233.5	398	Gac/Tac																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89462418	89462418	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	92	406	0	ENST00000336596.2:c.1888+2T>C		p.X630_splice	ENST00000336596	NM_005233.5	630																																													NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89521621	89521621	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	136	498	0	ENST00000336596.2:c.2698A>C	p.Asn900His	p.N900H	ENST00000336596	NM_005233.5	900	Aac/Cac																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134851592	134851592	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	159	675	0	ENST00000398015.3:c.998T>C	p.Val333Ala	p.V333A	ENST00000398015	NM_004441.4	333	gTc/gCc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142215249	142215249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	193	683	1	ENST00000350721.4:c.5852G>A	p.Arg1951Gln	p.R1951Q	ENST00000350721	NM_001184.3	1951	cGa/cAa																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142269080	142269080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	155	572	1	ENST00000350721.4:c.2870C>T	p.Ala957Val	p.A957V	ENST00000350721	NM_001184.3	957	gCt/gTt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	311	1096	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178948101	178948101	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	39	481	0	ENST00000263967.3:c.2873A>G	p.Gln958Arg	p.Q958R	ENST00000263967	NM_006218.2	958	cAg/cGg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	131	569	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc																																												NEWRECORD																																		
SOX2	0	MSKCC	GRCh37	3	181430396	181430396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	245	728	0	ENST00000325404.1:c.248C>T	p.Ser83Leu	p.S83L	ENST00000325404	NM_003106.3	83	tCg/tTg																																												NEWRECORD																																		
SOX2	6657	MSKCC	GRCh37	3	181430444	181430444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	244	707	0	ENST00000325404.1:c.296C>T	p.Ala99Val	p.A99V	ENST00000325404	NM_003106.3	99	gCg/gTg																																												NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187440303	187440303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	167	510	0	ENST00000232014.4:c.2064G>T	p.Lys688Asn	p.K688N	ENST00000232014	NM_001130845.1	688	aaG/aaT																																												NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187444519	187444519	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	149	583	2	ENST00000232014.4:c.1708G>A	p.Gly570Ser	p.G570S	ENST00000232014	NM_001130845.1	570	Ggt/Agt																																												NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187447679	187447679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	107	425	3	ENST00000232014.4:c.514G>A	p.Ala172Thr	p.A172T	ENST00000232014	NM_001130845.1	172	Gcc/Acc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189586473	189586473	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	123	348	0	ENST00000264731.3:c.1097A>G	p.Asp366Gly	p.D366G	ENST00000264731	NM_003722.4	366	gAc/gGc																																												NEWRECORD																																		
PDGFRA	5156	MSKCC	GRCh37	4	55136805	55136805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41279521		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	120	485	0	ENST00000257290.5:c.1127G>A	p.Arg376Gln	p.R376Q	ENST00000257290	NM_006206.4	376	cGa/cAa																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55968631	55968631	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	179	686	0	ENST00000263923.4:c.2032A>C	p.Thr678Pro	p.T678P	ENST00000263923	NM_002253.2	678	Aca/Cca																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66230740	66230740	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143201043		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	99	478	1	ENST00000273854.3:c.2231C>T	p.Thr744Ile	p.T744I	ENST00000273854	NM_004439.5	744	aCc/aTc																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467698	66467698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	130	587	1	ENST00000273854.3:c.571C>T	p.Arg191Cys	p.R191C	ENST00000273854	NM_004439.5	191	Cgt/Tgt																																												NEWRECORD																																		
EIF4E	0	MSKCC	GRCh37	4	99806158	99806158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	47	220	0	ENST00000280892.6:c.514G>A	p.Ala172Thr	p.A172T	ENST00000280892	NM_001130678.1	172	Gct/Act																																												NEWRECORD																																		
EIF4E	0	MSKCC	GRCh37	4	99823069	99823069	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	146	545	0	ENST00000280892.6:c.143T>C	p.Val48Ala	p.V48A	ENST00000280892	NM_001130678.1	48	gTt/gCt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106180822	106180822	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	168	523	0	ENST00000380013.4:c.3850T>C	p.Ser1284Pro	p.S1284P	ENST00000380013	NM_001127208.2	1284	Tcc/Ccc																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	110	345	1	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187554869	187554869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	188	678	0	ENST00000441802.2:c.4292C>T	p.Ala1431Val	p.A1431V	ENST00000441802	NM_005245.3	1431	gCt/gTt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187628443	187628443	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	134	553	0	ENST00000441802.2:c.2539A>G	p.Thr847Ala	p.T847A	ENST00000441802	NM_005245.3	847	Aca/Gca																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1255459	1255459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	170	532	2	ENST00000310581.5:c.3100C>T	p.Arg1034Cys	p.R1034C	ENST00000310581	NM_198253.2	1034	Cgc/Tgc																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	137	510	0	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38950099	38950099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	120	508	1	ENST00000357387.3:c.3851C>T	p.Ser1284Leu	p.S1284L	ENST00000357387	NM_152756.3	1284	tCg/tTg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38950411	38950411	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	168	584	0	ENST00000357387.3:c.3539A>C	p.Glu1180Ala	p.E1180A	ENST00000357387	NM_152756.3	1180	gAa/gCa																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38959902	38959902	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	151	538	0	ENST00000357387.3:c.2030A>G	p.Glu677Gly	p.E677G	ENST00000357387	NM_152756.3	677	gAa/gGa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160737	56160737	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	182	548	0	ENST00000399503.3:c.1011A>C	p.Lys337Asn	p.K337N	ENST00000399503	NM_005921.1	337	aaA/aaC																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67575550	67575550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	136	444	0	ENST00000274335.5:c.623C>A	p.Ser208Tyr	p.S208Y	ENST00000274335		208	tCt/tAt																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67592030	67592030	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	146	442	0	ENST00000274335.5:c.1846T>G	p.Leu616Val	p.L616V	ENST00000274335		616	Ttg/Gtg																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86637113	86637113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	67	239	0	ENST00000274376.6:c.1024G>A	p.Glu342Lys	p.E342K	ENST00000274376	NM_002890.2	342	Gaa/Aaa																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86685313	86685313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	96	277	0	ENST00000274376.6:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000274376	NM_002890.2	1010	cGa/cAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173365	112173365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	175	617	0	ENST00000257430.4:c.2074C>A	p.Pro692Thr	p.P692T	ENST00000257430	NM_000038.5	692	Cct/Act																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112179788	112179788	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201459013		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	86	348	1	ENST00000257430.4:c.8497C>T	p.Arg2833Cys	p.R2833C	ENST00000257430	NM_000038.5	2833	Cgc/Tgc																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131931352	131931352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	199	667	2	ENST00000265335.6:c.2057G>A	p.Arg686Lys	p.R686K	ENST00000265335		686	aGa/aAa																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149456962	149456962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	190	597	2	ENST00000286301.3:c.766C>T	p.Arg256Cys	p.R256C	ENST00000286301	NM_005211.3	256	Cgt/Tgt																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176709473	176709473	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	195	856	0	ENST00000439151.2:c.5900T>G	p.Phe1967Cys	p.F1967C	ENST00000439151	NM_022455.4	1967	tTt/tGt																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29912165	29912165	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	32	158	0	ENST00000376809.5:c.886C>A	p.Leu296Met	p.L296M	ENST00000376809	NM_002116.7	296	Ctg/Atg																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30672548	30672548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	294	834	1	ENST00000376406.3:c.4412C>T	p.Ser1471Phe	p.S1471F	ENST00000376406	NM_014641.2	1471	tCt/tTt																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30681477	30681477	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28986464		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	173	643	2	ENST00000376406.3:c.535C>T	p.Arg179Cys	p.R179C	ENST00000376406	NM_014641.2	179	Cgt/Tgt																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32190396	32190396	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	171	640	0	ENST00000375023.3:c.343C>T	p.Gln115Ter	p.Q115*	ENST00000375023	NM_004557.3	115	Cag/Tag																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32191681	32191681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	224	744	0	ENST00000375023.3:c.25C>A	p.Leu9Met	p.L9M	ENST00000375023	NM_004557.3	9	Ctg/Atg																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288218	33288218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	150	532	0	ENST00000374542.5:c.1190G>A	p.Arg397Gln	p.R397Q	ENST00000374542	NM_001141970.1	397	cGg/cAg																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288764	33288764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	129	381	2	ENST00000374542.5:c.788G>A	p.Arg263His	p.R263H	ENST00000374542	NM_001141970.1	263	cGc/cAc																																												NEWRECORD																																		
PIM1	0	MSKCC	GRCh37	6	37138916	37138916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	141	511	0	ENST00000373509.5:c.256G>T	p.Val86Leu	p.V86L	ENST00000373509	NM_002648.3	86	Gtg/Ttg																																												NEWRECORD																																		
PIM1	0	MSKCC	GRCh37	6	37140870	37140870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	195	724	1	ENST00000373509.5:c.706G>A	p.Val236Met	p.V236M	ENST00000373509	NM_002648.3	236	Gtg/Atg																																												NEWRECORD																																		
VEGFA	0	MSKCC	GRCh37	6	43749815	43749815	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140461341		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	251	775	2	ENST00000523873.1:c.668G>A	p.Arg223His	p.R223H	ENST00000523873		223	cGt/cAt																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93953254	93953254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	182	806	0	ENST00000369303.4:c.2887G>A	p.Val963Met	p.V963M	ENST00000369303	NM_004440.3	963	Gtg/Atg																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93967232	93967232	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	131	611	0	ENST00000369303.4:c.2120T>G	p.Val707Gly	p.V707G	ENST00000369303	NM_004440.3	707	gTc/gGc																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93967828	93967828	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	222	909	0	ENST00000369303.4:c.2099T>C	p.Val700Ala	p.V700A	ENST00000369303	NM_004440.3	700	gTt/gCt																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150005650	150005650	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144805744		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	99	392	0	ENST00000253339.5:c.575C>T	p.Pro192Leu	p.P192L	ENST00000253339		192	cCg/cTg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157522283	157522283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	176	689	0	ENST00000346085.5:c.4555C>T	p.Arg1519Cys	p.R1519C	ENST00000346085	NM_020732.3	1519	Cgt/Tgt																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527916	157527916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	105	410	0	ENST00000346085.5:c.5641C>A	p.Leu1881Ile	p.L1881I	ENST00000346085	NM_020732.3	1881	Ctc/Atc																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6026467	6026467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	39	151	0	ENST00000265849.7:c.1929G>T	p.Gln643His	p.Q643H	ENST00000265849	NM_000535.5	643	caG/caT																																												NEWRECORD																																		
IKZF1	10320	MSKCC	GRCh37	7	50467747	50467747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	178	655	0	ENST00000331340.3:c.982C>T	p.Arg328Cys	p.R328C	ENST00000331340	NM_006060.4	328	Cgc/Tgc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55227938	55227938	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	172	623	0	ENST00000275493.2:c.1405T>G	p.Leu469Val	p.L469V	ENST00000275493	NM_005228.3	469	Ttg/Gtg																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81388086	81388086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	121	606	0	ENST00000222390.5:c.289C>A	p.Leu97Ile	p.L97I	ENST00000222390	NM_000601.4	97	Ctc/Atc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509766	106509766	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	144	634	0	ENST00000359195.3:c.1760A>C	p.Lys587Thr	p.K587T	ENST00000359195	NM_002649.2	587	aAa/aCa																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128850275	128850275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	197	697	3	ENST00000249373.3:c.1538C>T	p.Pro513Leu	p.P513L	ENST00000249373	NM_005631.4	513	cCg/cTg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874203	151874203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	102	494	0	ENST00000262189.6:c.8335C>A	p.Leu2779Ile	p.L2779I	ENST00000262189	NM_170606.2	2779	Ctt/Att																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151878956	151878956	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	163	530	0	ENST00000262189.6:c.5989G>T	p.Gly1997Cys	p.G1997C	ENST00000262189	NM_170606.2	1997	Ggc/Tgc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152132745	152132745	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	89	466	0	ENST00000262189.6:c.127G>T	p.Asp43Tyr	p.D43Y	ENST00000262189	NM_170606.2	43	Gat/Tat																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90955525	90955525	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	171	628	1	ENST00000265433.3:c.2140C>T	p.Arg714Ter	p.R714*	ENST00000265433	NM_002485.4	714	Cga/Tga																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145737069	145737069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	117	478	1	ENST00000428558.2:c.3497G>T	p.Gly1166Val	p.G1166V	ENST00000428558	NM_004260.3	1166	gGc/gTc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145741937	145741937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	65	456	0	ENST00000428558.2:c.566G>A	p.Gly189Asp	p.G189D	ENST00000428558	NM_004260.3	189	gGc/gAc																																												NEWRECORD																																		
CD274	0	MSKCC	GRCh37	9	5462858	5462858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	87	414	0	ENST00000381577.3:c.419G>T	p.Arg140Ile	p.R140I	ENST00000381577	NM_014143.3	140	aGa/aTa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8504333	8504333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	181	557	4	ENST00000356435.5:c.1750C>T	p.Arg584Cys	p.R584C	ENST00000356435		584	Cgt/Tgt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8518081	8518081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	125	523	0	ENST00000356435.5:c.1310A>G	p.Gln437Arg	p.Q437R	ENST00000356435		437	cAg/cGg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8518405	8518405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	58	224	0	ENST00000356435.5:c.986C>T	p.Pro329Leu	p.P329L	ENST00000356435		329	cCt/cTt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8528596	8528596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	184	809	2	ENST00000356435.5:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000356435		179	cGa/cAa																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	37020754	37020754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	202	720	0	ENST00000358127.4:c.91C>T	p.Arg31Trp	p.R31W	ENST00000358127	NM_001280556.1	31	Cgg/Tgg																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87338539	87338539	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	148	753	0	ENST00000277120.3:c.635A>C	p.Lys212Thr	p.K212T	ENST00000277120		212	aAg/aCg																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93629477	93629477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	122	471	0	ENST00000375746.1:c.911G>T	p.Arg304Ile	p.R304I	ENST00000375746	NM_001174167.1	304	aGa/aTa																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249918	110249918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	65	261	0	ENST00000374672.4:c.757G>T	p.Gly253Cys	p.G253C	ENST00000374672	NM_004235.4	253	Ggc/Tgc																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133729570	133729570	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138924193		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	246	688	0	ENST00000318560.5:c.199G>A	p.Val67Ile	p.V67I	ENST00000318560	NM_005157.4	67	Gtt/Att																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139391236	139391236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	169	572	0	ENST00000277541.6:c.6955G>A	p.Val2319Met	p.V2319M	ENST00000277541	NM_017617.3	2319	Gtg/Atg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139399387	139399387	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	146	557	0	ENST00000277541.6:c.4756C>T	p.Arg1586Cys	p.R1586C	ENST00000277541	NM_017617.3	1586	Cgc/Tgc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100420	8100420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	180	965	2	ENST00000346208.3:c.394G>A	p.Val132Ile	p.V132I	ENST00000346208		132	Gtc/Atc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332436	70332436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	156	644	0	ENST00000373644.4:c.341G>A	p.Arg114Gln	p.R114Q	ENST00000373644	NM_030625.2	114	cGa/cAa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70426845	70426845	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	123	550	0	ENST00000373644.4:c.4505T>C	p.Val1502Ala	p.V1502A	ENST00000373644	NM_030625.2	1502	gTc/gCc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	84	386	1	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	104	416	1	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2154312	2154312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	206	999	0	ENST00000434045.2:c.616A>G	p.Arg206Gly	p.R206G	ENST00000434045	NM_001127598.1	206	Agg/Ggg																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2156668	2156668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	225	836	1	ENST00000434045.2:c.254G>T	p.Ser85Ile	p.S85I	ENST00000434045	NM_001127598.1	85	aGt/aTt																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94224031	94224031	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116679717		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	133	655	1	ENST00000323929.3:c.121G>A	p.Asp41Asn	p.D41N	ENST00000323929	NM_005591.3	41	Gat/Aat																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100912815	100912815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	235	855	0	ENST00000325455.5:c.2507G>A	p.Arg836Gln	p.R836Q	ENST00000325455	NM_001202474.3	836	cGa/cAa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108163458	108163458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	124	668	0	ENST00000278616.4:c.4549C>A	p.Leu1517Ile	p.L1517I	ENST00000278616	NM_000051.3	1517	Ctt/Att																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108203565	108203565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	102	383	0	ENST00000278616.4:c.7865C>T	p.Ala2622Val	p.A2622V	ENST00000278616	NM_000051.3	2622	gCa/gTa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108205756	108205756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	118	451	0	ENST00000278616.4:c.8071C>T	p.Arg2691Cys	p.R2691C	ENST00000278616	NM_000051.3	2691	Cgc/Tgc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118343493	118343493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	146	462	0	ENST00000534358.1:c.1619C>A	p.Ser540Tyr	p.S540Y	ENST00000534358	NM_005933.3	540	tCt/tAt																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	495134	495134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	156	499	3	ENST00000399788.2:c.172C>A	p.Gln58Lys	p.Q58K	ENST00000399788	NM_001042603.1	58	Cag/Aag																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245343	46245343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	219	651	1	ENST00000334344.6:c.3437C>T	p.Ser1146Leu	p.S1146L	ENST00000334344	NM_152641.2	1146	tCg/tTg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245971	46245971	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	102	513	0	ENST00000334344.6:c.4065A>C	p.Lys1355Asn	p.K1355N	ENST00000334344	NM_152641.2	1355	aaA/aaC																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246216	46246216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	156	689	1	ENST00000334344.6:c.4310C>T	p.Ala1437Val	p.A1437V	ENST00000334344	NM_152641.2	1437	gCg/gTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49421821	49421821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	269	884	0	ENST00000301067.7:c.14486A>G	p.Glu4829Gly	p.E4829G	ENST00000301067	NM_003482.3	4829	gAg/gGg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431070	49431070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	176	660	1	ENST00000301067.7:c.10069C>A	p.Leu3357Ile	p.L3357I	ENST00000301067	NM_003482.3	3357	Cta/Ata																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49432343	49432343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	228	732	2	ENST00000301067.7:c.8796G>T	p.Gln2932His	p.Q2932H	ENST00000301067	NM_003482.3	2932	caG/caT																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49443607	49443607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	208	704	1	ENST00000301067.7:c.3764G>A	p.Gly1255Asp	p.G1255D	ENST00000301067	NM_003482.3	1255	gGc/gAc																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856617	111856617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	151	316	3	ENST00000341259.2:c.668C>T	p.Ala223Val	p.A223V	ENST00000341259	NM_005475.2	223	gCg/gTg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115117425	115117425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	166	618	1	ENST00000257566.3:c.749C>T	p.Pro250Leu	p.P250L	ENST00000257566	NM_016569.3	250	cCc/cTc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133219839	133219839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	125	458	0	ENST00000320574.5:c.4522C>T	p.Arg1508Cys	p.R1508C	ENST00000320574	NM_006231.2	1508	Cgc/Tgc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133225553	133225553	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs151278283		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	204	755	2	ENST00000320574.5:c.4111C>T	p.Arg1371Ter	p.R1371*	ENST00000320574	NM_006231.2	1371	Cga/Tga																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133225636	133225636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	116	505	0	ENST00000320574.5:c.4028G>A	p.Gly1343Asp	p.G1343D	ENST00000320574	NM_006231.2	1343	gGc/gAc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	200	700	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26978210	26978210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	125	426	0	ENST00000381527.3:c.1387C>T	p.Arg463Trp	p.R463W	ENST00000381527	NM_001260.1	463	Cgg/Tgg																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28592708	28592708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	153	514	0	ENST00000241453.7:c.2437G>A	p.Ala813Thr	p.A813T	ENST00000241453	NM_004119.2	813	Gcc/Acc																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28622478	28622478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	158	552	0	ENST00000241453.7:c.1139G>T	p.Arg380Ile	p.R380I	ENST00000241453	NM_004119.2	380	aGa/aTa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28963966	28963966	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	166	680	0	ENST00000282397.4:c.1936G>T	p.Glu646Ter	p.E646*	ENST00000282397	NM_002019.4	646	Gaa/Taa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32911429	32911429	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	211	1021	0	ENST00000380152.3:c.2937A>G	p.Ile979Met	p.I979M	ENST00000380152		979	atA/atG																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913227	32913227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	298	1059	2	ENST00000380152.3:c.4735G>A	p.Ala1579Thr	p.A1579T	ENST00000380152		1579	Gca/Aca																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32953497	32953497	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	201	870	2	ENST00000380152.3:c.8798G>T	p.Arg2933Met	p.R2933M	ENST00000380152		2933	aGg/aTg																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32953957	32953957	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	77	454	0	ENST00000380152.3:c.9024T>G	p.Ile3008Met	p.I3008M	ENST00000380152		3008	atT/atG																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134333	41134333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1343	306	1093	1	ENST00000379561.5:c.1295G>A	p.Ser432Asn	p.S432N	ENST00000379561	NM_002015.3	432	aGc/aAc																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73345217	73345217	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	109	658	0	ENST00000377767.4:c.1670+2T>C		p.X557_splice	ENST00000377767	NM_014953.3	557																																													NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103504506	103504506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	200	651	1	ENST00000355739.4:c.127C>T	p.Arg43Trp	p.R43W	ENST00000355739	NM_000123.3	43	Cgg/Tgg																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110436905	110436905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	42	188	0	ENST00000375856.3:c.1496C>T	p.Ser499Phe	p.S499F	ENST00000375856	NM_003749.2	499	tCc/tTc																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060922	38060922	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	97	460	0	ENST00000250448.2:c.1067C>A	p.Thr356Asn	p.T356N	ENST00000250448	NM_004496.3	356	aCt/aAt																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061651	38061651	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	51	148	0	ENST00000250448.2:c.338T>C	p.Met113Thr	p.M113T	ENST00000250448	NM_004496.3	113	aTg/aCg																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65543379	65543379	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	229	735	1	ENST00000358664.4:c.298C>T	p.Arg100Cys	p.R100C	ENST00000358664	NM_002382.4	100	Cgt/Tgt																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81609732	81609732	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	222	812	1	ENST00000298171.2:c.1330T>C	p.Tyr444His	p.Y444H	ENST00000298171	NM_000369.2	444	Tac/Cac																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95584039	95584039	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	145	507	0	ENST00000343455.3:c.1429A>G	p.Asn477Asp	p.N477D	ENST00000343455	NM_177438.2	477	Aat/Gat																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95590984	95590984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	74	310	0	ENST00000343455.3:c.925G>A	p.Val309Ile	p.V309I	ENST00000343455	NM_177438.2	309	Gta/Ata																																												NEWRECORD																																		
GREM1	0	MSKCC	GRCh37	15	33023378	33023378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1472	344	1378	0	ENST00000300177.4:c.487C>T	p.Pro163Ser	p.P163S	ENST00000300177	NM_001191322.1	163	Cca/Tca																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042761	42042761	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1234	325	1107	0	ENST00000219905.7:c.6956T>G	p.Ile2319Ser	p.I2319S	ENST00000219905	NM_001164273.1	2319	aTt/aGt																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88679765	88679765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	206	683	2	ENST00000360948.2:c.698G>A	p.Gly233Asp	p.G233D	ENST00000360948	NM_001012338.2	233	gGc/gAc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88690623	88690623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	135	474	1	ENST00000360948.2:c.407G>T	p.Ser136Ile	p.S136I	ENST00000360948	NM_001012338.2	136	aGt/aTt																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91290665	91290665	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148545569		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	170	646	0	ENST00000355112.3:c.43C>T	p.Arg15Cys	p.R15C	ENST00000355112	NM_000057.2	15	Cgt/Tgt																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2105507	2105507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	138	394	1	ENST00000219476.3:c.586G>A	p.Ala196Thr	p.A196T	ENST00000219476	NM_000548.3	196	Gca/Aca																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2131704	2131704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	269	949	1	ENST00000219476.3:c.3719G>A	p.Arg1240His	p.R1240H	ENST00000219476	NM_000548.3	1240	cGc/cAc																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2136798	2136798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	232	808	1	ENST00000219476.3:c.4915C>T	p.Arg1639Cys	p.R1639C	ENST00000219476	NM_000548.3	1639	Cgc/Tgc																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2137885	2137885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	179	636	1	ENST00000219476.3:c.5011G>A	p.Val1671Met	p.V1671M	ENST00000219476	NM_000548.3	1671	Gtg/Atg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3842042	3842042	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	181	590	1	ENST00000262367.5:c.1270C>T	p.Arg424Ter	p.R424*	ENST00000262367	NM_004380.2	424	Cga/Tga																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9943753	9943753	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	126	475	0	ENST00000330684.3:c.1188C>A	p.Phe396Leu	p.F396L	ENST00000330684	NM_001134407.1	396	ttC/ttA																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10031970	10031970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	241	892	1	ENST00000330684.3:c.853G>A	p.Asp285Asn	p.D285N	ENST00000330684	NM_001134407.1	285	Gac/Aac																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14024709	14024709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	128	510	0	ENST00000311895.7:c.935C>A	p.Ser312Tyr	p.S312Y	ENST00000311895	NM_005236.2	312	tCt/tAt																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56832416	56832416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	232	834	0	ENST00000308159.5:c.326C>T	p.Ala109Val	p.A109V	ENST00000308159	NM_014669.4	109	gCc/gTc																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67650653	67650653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	192	607	1	ENST00000264010.4:c.958C>T	p.Arg320Cys	p.R320C	ENST00000264010	NM_006565.3	320	Cgt/Tgt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828579	72828579	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1346	342	1078	0	ENST00000268489.5:c.8002C>T	p.Arg2668Ter	p.R2668*	ENST00000268489	NM_006885.3	2668	Cga/Tga																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830135	72830135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1233	301	953	1	ENST00000268489.5:c.6446G>A	p.Arg2149His	p.R2149H	ENST00000268489	NM_006885.3	2149	cGc/cAc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830945	72830945	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1378	323	1260	0	ENST00000268489.5:c.5636A>C	p.Lys1879Thr	p.K1879T	ENST00000268489	NM_006885.3	1879	aAa/aCa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72832175	72832175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	266	924	0	ENST00000268489.5:c.4406C>T	p.Ala1469Val	p.A1469V	ENST00000268489	NM_006885.3	1469	gCc/gTc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72832478	72832478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	271	971	0	ENST00000268489.5:c.4103A>G	p.Asn1368Ser	p.N1368S	ENST00000268489	NM_006885.3	1368	aAc/aGc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89371722	89371722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	245	821	0	ENST00000301030.4:c.118C>A	p.Pro40Thr	p.P40T	ENST00000301030	NM_001256183.1	40	Cca/Aca																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89849415	89849415	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1127	299	1027	0	ENST00000389301.3:c.1566G>T	p.Lys522Asn	p.K522N	ENST00000389301	NM_000135.2	522	aaG/aaT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577589	7577589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	117	543	0	ENST00000269305.4:c.692C>A	p.Thr231Asn	p.T231N	ENST00000269305	NM_001126112.2	231	aCc/aAc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15965090	15965090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	106	414	0	ENST00000268712.3:c.5506G>A	p.Val1836Met	p.V1836M	ENST00000268712	NM_006311.3	1836	Gtg/Atg																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16075290	16075290	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	177	563	0	ENST00000268712.3:c.262A>G	p.Ser88Gly	p.S88G	ENST00000268712	NM_006311.3	88	Agt/Ggt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29653070	29653070	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	174	623	0	ENST00000358273.4:c.5068A>G	p.Thr1690Ala	p.T1690A	ENST00000358273	NM_001042492.2	1690	Acc/Gcc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29667643	29667643	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	173	625	0	ENST00000358273.4:c.7042C>A	p.Leu2348Ile	p.L2348I	ENST00000358273	NM_001042492.2	2348	Ctc/Atc																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37618501	37618501	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	149	636	0	ENST00000447079.4:c.177A>C	p.Glu59Asp	p.E59D	ENST00000447079	NM_015083.1	59	gaA/gaC																																												NEWRECORD																																		
RAD51C	0	MSKCC	GRCh37	17	56770041	56770041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	173	518	0	ENST00000337432.4:c.37G>A	p.Asp13Asn	p.D13N	ENST00000337432	NM_058216.2	13	Gat/Aat																																												NEWRECORD																																		
RAD51C	0	MSKCC	GRCh37	17	56780688	56780688	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	124	466	0	ENST00000337432.4:c.703A>C	p.Lys235Gln	p.K235Q	ENST00000337432	NM_058216.2	235	Aag/Cag																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59760670	59760670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	129	594	0	ENST00000259008.2:c.3737C>A	p.Pro1246His	p.P1246H	ENST00000259008	NM_032043.2	1246	cCt/cAt																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63554452	63554452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	186	528	2	ENST00000307078.5:c.287G>A	p.Arg96Gln	p.R96Q	ENST00000307078	NM_004655.3	96	cGa/cAa																																												NEWRECORD																																		
PRKAR1A	0	MSKCC	GRCh37	17	66518898	66518898	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	116	344	0	ENST00000358598.2:c.179A>G	p.Glu60Gly	p.E60G	ENST00000358598	NM_212471.2	60	gAg/gGg																																												NEWRECORD																																		
H3F3B	0	MSKCC	GRCh37	17	73774949	73774949	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	161	510	0	ENST00000254810.4:c.224T>C	p.Ile75Thr	p.I75T	ENST00000254810	NM_005324.3	75	aTc/aCc																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39535271	39535271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	125	542	1	ENST00000262039.4:c.15G>T	p.Glu5Asp	p.E5D	ENST00000262039	NM_002647.2	5	gaG/gaT																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45423049	45423049	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	191	630	1	ENST00000262160.6:c.79G>T	p.Gly27Ter	p.G27*	ENST00000262160	NM_005901.5	27	Gga/Tga																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1612244	1612244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	237	780	0	ENST00000344749.5:c.1775C>T	p.Ala592Val	p.A592V	ENST00000344749	NM_001136139.2	592	gCc/gTc																																												NEWRECORD																																		
GNA11	0	MSKCC	GRCh37	19	3119007	3119007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	169	695	0	ENST00000078429.4:c.691G>A	p.Ala231Thr	p.A231T	ENST00000078429	NM_002067.2	231	Gcc/Acc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5222861	5222861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	39	325	0	ENST00000357368.4:c.2942C>G	p.Thr981Ser	p.T981S	ENST00000357368	NM_002850.3	981	aCt/aGt																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5245949	5245949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	249	744	1	ENST00000357368.4:c.826G>A	p.Val276Met	p.V276M	ENST00000357368	NM_002850.3	276	Gtg/Atg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7117159	7117159	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs74495977		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	184	746	1	ENST00000302850.5:c.4057C>T	p.Arg1353Trp	p.R1353W	ENST00000302850	NM_000208.2	1353	Cgg/Tgg																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10265424	10265424	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	142	495	0	ENST00000340748.4:c.1622A>C	p.Asn541Thr	p.N541T	ENST00000340748		541	aAc/aCc																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10283776	10283776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	298	835	0	ENST00000340748.4:c.710G>T	p.Arg237Ile	p.R237I	ENST00000340748		237	aGa/aTa																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610075	10610075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	169	631	1	ENST00000171111.5:c.635G>A	p.Gly212Glu	p.G212E	ENST00000171111	NM_203500.1	212	gGg/gAg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11094831	11094831	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	267	859	0	ENST00000344626.4:c.4T>C	p.Ser2Pro	p.S2P	ENST00000344626	NM_003072.3	2	Tcc/Ccc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11121143	11121143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	213	805	0	ENST00000344626.4:c.2210C>A	p.Ala737Asp	p.A737D	ENST00000344626	NM_003072.3	737	gCt/gAt																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15284936	15284936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	150	538	0	ENST00000263388.2:c.4679G>A	p.Arg1560Gln	p.R1560Q	ENST00000263388	NM_000435.2	1560	cGg/cAg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15303197	15303197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	154	694	0	ENST00000263388.2:c.331G>A	p.Gly111Ser	p.G111S	ENST00000263388	NM_000435.2	111	Ggc/Agc																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18271328	18271328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	236	759	3	ENST00000222254.8:c.370G>A	p.Ala124Thr	p.A124T	ENST00000222254	NM_005027.3	124	Gct/Act																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41745189	41745189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	185	756	0	ENST00000301178.4:c.1255C>A	p.Leu419Ile	p.L419I	ENST00000301178	NM_021913.4	419	Ctc/Atc																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41748854	41748854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	270	860	1	ENST00000301178.4:c.1379C>T	p.Ala460Val	p.A460V	ENST00000301178	NM_021913.4	460	gCc/gTc																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41758793	41758793	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	266	894	1	ENST00000301178.4:c.1847C>A	p.Pro616His	p.P616H	ENST00000301178	NM_021913.4	616	cCt/cAt																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31384628	31384628	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201465442		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	207	786	1	ENST00000328111.2:c.1330G>A	p.Val444Met	p.V444M	ENST00000328111	NM_006892.3	444	Gtg/Atg																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39741540	39741540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	131	350	0	ENST00000361337.2:c.1427C>T	p.Ala476Val	p.A476V	ENST00000361337	NM_003286.2	476	gCt/gTt																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46252808	46252808	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	253	901	0	ENST00000371998.3:c.237A>G	p.Ile79Met	p.I79M	ENST00000371998		79	atA/atG																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46256425	46256425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	304	980	1	ENST00000371998.3:c.653G>A	p.Arg218His	p.R218H	ENST00000371998		218	cGc/cAc																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46281766	46281766	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	294	912	0	ENST00000371998.3:c.4213A>C	p.Met1405Leu	p.M1405L	ENST00000371998		1405	Atg/Ctg																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164703	36164703	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	189	752	1	ENST00000300305.3:c.1172C>T	p.Ala391Val	p.A391V	ENST00000300305		391	gCg/gTg																																												NEWRECORD																																		
ZRSR2	0	MSKCC	GRCh37	X	15838356	15838356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	281	728	0	ENST00000307771.7:c.854C>A	p.Ser285Tyr	p.S285Y	ENST00000307771	NM_005089.3	285	tCt/tAt																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39934379	39934379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	155	497	0	ENST00000378444.4:c.220C>T	p.Arg74Cys	p.R74C	ENST00000378444	NM_001123385.1	74	Cgc/Tgc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44918695	44918695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	134	566	0	ENST00000377967.4:c.1178G>A	p.Arg393Gln	p.R393Q	ENST00000377967	NM_021140.2	393	cGa/cAa																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47422686	47422686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	258	903	2	ENST00000377045.4:c.158G>A	p.Gly53Asp	p.G53D	ENST00000377045	NM_001654.4	53	gGt/gAt																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765901	66765901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	207	756	0	ENST00000374690.3:c.913G>A	p.Asp305Asn	p.D305N	ENST00000374690	NM_000044.3	305	Gat/Aat																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766561	66766561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	226	892	0	ENST00000374690.3:c.1573G>A	p.Gly525Ser	p.G525S	ENST00000374690	NM_000044.3	525	Ggc/Agc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66931357	66931357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	238	871	3	ENST00000374690.3:c.1999G>A	p.Gly667Ser	p.G667S	ENST00000374690	NM_000044.3	667	Ggc/Agc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66937337	66937337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	263	784	0	ENST00000374690.3:c.2191G>A	p.Val731Met	p.V731M	ENST00000374690	NM_000044.3	731	Gtg/Atg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76829726	76829726	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	204	833	0	ENST00000373344.5:c.6315A>C	p.Glu2105Asp	p.E2105D	ENST00000373344	NM_000489.3	2105	gaA/gaC																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938751	76938751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	162	753	1	ENST00000373344.5:c.1997G>A	p.Arg666Gln	p.R666Q	ENST00000373344	NM_000489.3	666	cGa/cAa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76939266	76939266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	177	740	1	ENST00000373344.5:c.1482G>T	p.Lys494Asn	p.K494N	ENST00000373344	NM_000489.3	494	aaG/aaT																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123195114	123195114	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	196	727	0	ENST00000218089.9:c.1457A>C	p.Asp486Ala	p.D486A	ENST00000218089	NM_001042749.1	486	gAc/gCc																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123200065	123200065	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	162	731	0	ENST00000218089.9:c.2137T>G	p.Tyr713Asp	p.Y713D	ENST00000218089	NM_001042749.1	713	Tac/Gac																																												NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69631104	69631104	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	194	875	0	ENST00000334134.2:c.308del	p.Gly103AspfsTer55	p.G103Dfs*55	ENST00000334134	NM_005247.2	103	gGa/ga																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72984600	72984601	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTG			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1312	325	1029	0	ENST00000268489.5:c.2980_2983dup	p.Leu995ProfsTer53	p.L995Pfs*53	ENST00000268489	NM_006885.3	995	ctc/cCAGCtc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112179496	112179496	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	180	698	0	ENST00000257430.4:c.8206del	p.Thr2736LeufsTer3	p.T2736Lfs*3	ENST00000257430	NM_000038.5	2735	ggA/gg																																												NEWRECORD																																		
HOXB13	0	MSKCC	GRCh37	17	46805373	46805373	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	321	1074	0	ENST00000290295.7:c.583del	p.Trp195GlyfsTer84	p.W195Gfs*84	ENST00000290295	NM_006361.5	195	Tgg/gg																																												NEWRECORD																																		
PMS2	5395	MSKCC	GRCh37	7	6043349	6043349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	68	264	0	ENST00000265849.7:c.325del	p.Glu109LysfsTer3	p.E109Kfs*3	ENST00000265849	NM_000535.5	109	Gaa/aa																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209357	98209358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	140	680	0	ENST00000331920.6:c.4180_4181insT	p.Arg1394LeufsTer10	p.R1394Lfs*10	ENST00000331920	NM_000264.3	1394	cga/cTga																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94189473	94189473	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs765800560		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	91	430	0	ENST00000323929.3:c.1532del	p.Asn511IlefsTer13	p.N511Ifs*13	ENST00000323929	NM_005591.3	511	aAt/at																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0012113-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	95	417	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766350	66766351	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGTGGTGGC			P-0000560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			44	50	41	0	ENST00000374690.3:c.1365_1373dupTGGTGGCGG	p.Gly471_Gly473dup	p.G471_G473dup	ENST00000374690	NM_000044.3	471	-/GGTGGTGGC																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180048631	180048631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	50	155	0	ENST00000261937.6:c.1931C>T	p.Ala644Val	p.A644V	ENST00000261937	NM_182925.4	644	gCg/gTg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32183091	32183091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000560-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	59	305	0	ENST00000375023.3:c.1933G>A	p.Asp645Asn	p.D645N	ENST00000375023	NM_004557.3	645	Gac/Aac																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	90	493	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188262	10188263	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0010520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	98	865	0	ENST00000256474.2:c.407_408dup	p.Val137LeufsTer23	p.V137Lfs*23	ENST00000256474	NM_000551.3	135	-/TT																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	388	495	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0012987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	18	587	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49425644	49425644	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	185	492	1	ENST00000301067.7:c.12844C>T	p.Arg4282Ter	p.R4282*	ENST00000301067	NM_003482.3	4282	Cga/Tga																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150004519	150004519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1480	85	865	0	ENST00000253339.5:c.1706C>G	p.Ser569Cys	p.S569C	ENST00000253339		569	tCt/tGt																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78931447	78931447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	215	531	0	ENST00000306801.3:c.3394G>C	p.Glu1132Gln	p.E1132Q	ENST00000306801	NM_020761.2	1132	Gag/Cag																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5219367	5219367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	112	574	1	ENST00000357368.4:c.3877G>A	p.Val1293Met	p.V1293M	ENST00000357368	NM_002850.3	1293	Gtg/Atg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40757438	40757438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	68	587	0	ENST00000373198.4:c.2860G>T	p.Asp954Tyr	p.D954Y	ENST00000373198	NM_133170.3	954	Gat/Tat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579327	7579328	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAA			P-0012987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	217	456	0	ENST00000269305.4:c.359_360insTTGG	p.Lys120AsnfsTer30	p.K120Nfs*30	ENST00000269305	NM_001126112.2	120	aag/aaTTGGg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	173	158	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39755548	39755548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	189	271	1	ENST00000288319.7:c.1217C>T	p.Ser406Leu	p.S406L	ENST00000288319	NM_182918.3	406	tCa/tTa																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49722905	49722906	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	GGG			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	10	78	0	ENST00000449682.2:c.1419_1421dup	p.Pro474dup	p.P474dup	ENST00000449682	NM_020998.3	474	cca/ccCCCa																																												NEWRECORD																																		
PHOX2B	8929	MSKCC	GRCh37	4	41747879	41747879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	200	262	0	ENST00000226382.2:c.890C>T	p.Ser297Leu	p.S297L	ENST00000226382	NM_003924.3	297	tCg/tTg																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	228411	228411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	169	361	0	ENST00000264932.6:c.733C>T	p.His245Tyr	p.H245Y	ENST00000264932	NM_004168.2	245	Cat/Tat																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117650502	117650502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	229	506	0	ENST00000368508.3:c.5356C>T	p.Leu1786Phe	p.L1786F	ENST00000368508	NM_002944.2	1786	Ctt/Ttt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117662700	117662700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	148	367	0	ENST00000368508.3:c.4765G>A	p.Glu1589Lys	p.E1589K	ENST00000368508	NM_002944.2	1589	Gaa/Aaa																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913357		P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	443	277	0	ENST00000288602.6:c.1405G>A	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Aga																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135772092	135772092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	77	104	0	ENST00000298552.3:c.3025G>A	p.Glu1009Lys	p.E1009K	ENST00000298552	NM_001162426.1	1009	Gaa/Aaa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18466936	18466936	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	171	373	0	ENST00000266497.5:c.1075A>T	p.Lys359Ter	p.K359*	ENST00000266497		359	Aaa/Taa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18650664	18650664	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	136	249	0	ENST00000266497.5:c.2875T>C	p.Ser959Pro	p.S959P	ENST00000266497		959	Tcc/Ccc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578548	7578548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	222	256	0	ENST00000269305.4:c.382C>T	p.Pro128Ser	p.P128S	ENST00000269305	NM_001126112.2	128	Cct/Tct																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9561309	9561309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	236	271	0	ENST00000353224.5:c.473C>T	p.Pro158Leu	p.P158L	ENST00000353224	NM_177990.2	158	cCg/cTg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40730889	40730889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	148	283	0	ENST00000373198.4:c.3646G>A	p.Gly1216Arg	p.G1216R	ENST00000373198	NM_133170.3	1216	Ggg/Agg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41101025	41101025	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	207	334	0	ENST00000373198.4:c.1331C>T	p.Ser444Phe	p.S444F	ENST00000373198	NM_133170.3	444	tCc/tTc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47038816	47038816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	175	130	1	ENST00000329236.7:c.592C>T	p.Pro198Ser	p.P198S	ENST00000329236	NM_001204466.1	198	Ccc/Tcc																																												NEWRECORD																																		
HIST1H2BD	0	MSKCC	GRCh37	6	26158587	26158598	+	inframe_deletion	In_Frame_Del	DEL	AATTCCTTCGTC	AATTCCTTCGTC	-			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	49	187	0	ENST00000289316.2:c.192_203del	p.Ser65_Asn68del	p.S65_N68del	ENST00000289316	NM_138720.2	64	AATTCCTTCGTC/-																																												NEWRECORD																																		
HIST1H3C	0	MSKCC	GRCh37	6	26046036	26046037	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0005109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	257	492	1	ENST00000540144.1:c.398_399delinsAA	p.Gly133Glu	p.G133E	ENST00000540144	NM_003531.2	133	gGG/gAA																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0011309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	59	325	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149502690	149502690	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	38	408	0	ENST00000261799.4:c.2098T>G	p.Phe700Val	p.F700V	ENST00000261799	NM_002609.3	700	Ttc/Gtc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577118	7577119	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	84	459	1	ENST00000269305.4:c.819dup	p.Val274CysfsTer32	p.V274Cfs*32	ENST00000269305	NM_001126112.2	273	-/T																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	283	408	2	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30673752	30673752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	186	270	0	ENST00000376406.3:c.3208C>G	p.Leu1070Val	p.L1070V	ENST00000376406	NM_014641.2	1070	Ctt/Gtt																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88678980	88678981	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	ATA			P-0003541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	189	145	0	ENST00000372037.3:c.920_921insATA	p.Leu307_Ile308insTer	p.L307_I308ins*	ENST00000372037	NM_004329.2	307	ttg/ttATAg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	174	229	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0006868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	46	205	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131977953	131977953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	182	291	0	ENST00000265335.6:c.3836G>A	p.Arg1279His	p.R1279H	ENST00000265335		1279	cGt/cAt																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56482552	56482552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	93	237	0	ENST00000267101.3:c.1009G>A	p.Gly337Arg	p.G337R	ENST00000267101	NM_001982.3	337	Ggg/Agg																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140454014	140454014	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs139510971		P-0006868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	175	231	0	ENST00000288602.6:c.1714A>T	p.Ile572Phe	p.I572F	ENST00000288602	NM_004333.4	572	Atc/Ttc																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150004247	150004247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	116	324	0	ENST00000253339.5:c.1978C>T	p.Arg660Cys	p.R660C	ENST00000253339		660	Cgt/Tgt																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100999617	100999617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	85	426	1	ENST00000325455.5:c.185G>A	p.Arg62Gln	p.R62Q	ENST00000325455	NM_001202474.3	62	cGg/cAg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246333	46246333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	90	246	1	ENST00000334344.6:c.4427C>T	p.Ser1476Phe	p.S1476F	ENST00000334344	NM_152641.2	1476	tCt/tTt																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67473692	67473692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	286	254	0	ENST00000327367.4:c.772G>A	p.Asp258Asn	p.D258N	ENST00000327367	NM_005902.3	258	Gat/Aat																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175721	112175722	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	163	204	0	ENST00000257430.4:c.4432_4433del	p.Arg1478GlyfsTer8	p.R1478Gfs*8	ENST00000257430	NM_000038.5	1477	cAG/c																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120341	70120342	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0006868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	117	465	0	ENST00000245479.2:c.1344_1345dup	p.Ser449ThrfsTer22	p.S449Tfs*22	ENST00000245479	NM_000346.3	448	tcc/tcCAc																																												NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0015030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	71	1108	3	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30691926	30691926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	33	507	0	ENST00000359013.4:c.503G>T	p.Cys168Phe	p.C168F	ENST00000359013	NM_001024847.2	168	tGc/tTc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937017	76937017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015030-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	34	502	0	ENST00000373344.5:c.3731C>A	p.Ser1244Tyr	p.S1244Y	ENST00000373344	NM_000489.3	1244	tCt/tAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	147	652	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0004350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	61	469	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0004350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	43	418	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	20	343	0	ENST00000263967.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000263967	NM_006218.2	357	cGa/cAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174502	112174502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	31	332	0	ENST00000257430.4:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000257430	NM_000038.5	1071	Caa/Taa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49435254	49435254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	65	288	0	ENST00000301067.7:c.6299C>T	p.Pro2100Leu	p.P2100L	ENST00000301067	NM_003482.3	2100	cCg/cTg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15289739	15289739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	78	342	0	ENST00000263388.2:c.3732G>C	p.Gln1244His	p.Q1244H	ENST00000263388	NM_000435.2	1244	caG/caC																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175602	112175603	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0004350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	25	545	1	ENST00000257430.4:c.4314_4315dup	p.Pro1439HisfsTer35	p.P1439Hfs*35	ENST00000257430	NM_000038.5	1437	-/AC																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	262	159	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0012037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	242	287	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88423641	88423641	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	149	237	0	ENST00000360948.2:c.2194C>G	p.Leu732Val	p.L732V	ENST00000360948	NM_001012338.2	732	Ctc/Gtc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48953720	48953734	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGTTTGTAGCGATA	TTGTTTGTAGCGATA	-			P-0012037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	86	97	0	ENST00000267163.4:c.1333-10_1337del		p.X445_splice	ENST00000267163	NM_000321.2	445																																													NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49424436	49424436	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	118	283	0	ENST00000301067.7:c.13787del	p.Gly4596GlufsTer21	p.G4596Efs*21	ENST00000301067	NM_003482.3	4596	gGa/ga																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16005016	16005017	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	219	252	0	ENST00000268712.3:c.2237dup	p.Asn746LysfsTer7	p.N746Kfs*7	ENST00000268712	NM_006311.3	746	aac/aaAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	110	159	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	415	269	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206651145	206651145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	295	216	1	ENST00000367120.3:c.755G>T	p.Arg252Leu	p.R252L	ENST00000367120	NM_014002.3	252	cGg/cTg																																												NEWRECORD																																		
HIST3H3	0	MSKCC	GRCh37	1	228612878	228612878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	428	433	3	ENST00000366696.1:c.149G>C	p.Arg50Pro	p.R50P	ENST00000366696	NM_003493.2	50	cGc/cCc																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876585	35876585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	288	108	0	ENST00000303115.3:c.1377G>T	p.Gln459His	p.Q459H	ENST00000303115	NM_002185.3	459	caG/caT																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30673548	30673548	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	189	359	0	ENST00000376406.3:c.3412A>T	p.Thr1138Ser	p.T1138S	ENST00000376406	NM_014641.2	1138	Act/Tct																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13978873	13978873	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	283	150	0	ENST00000405192.2:c.236-2A>G		p.X79_splice	ENST00000405192	NM_001163147.1	79																																													NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152012425	152012425	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	152	160	0	ENST00000262189.6:c.390-2A>G		p.X130_splice	ENST00000262189	NM_170606.2	130																																													NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32972777	32972777	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	223	223	0	ENST00000380152.3:c.10127C>G	p.Ser3376Ter	p.S3376*	ENST00000380152		3376	tCa/tGa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42041599	42041599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	673	409	1	ENST00000219905.7:c.5794G>T	p.Gly1932Cys	p.G1932C	ENST00000219905	NM_001164273.1	1932	Ggt/Tgt																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2130286	2130286	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	417	320	0	ENST00000219476.3:c.3518C>A	p.Thr1173Asn	p.T1173N	ENST00000219476	NM_000548.3	1173	aCc/aAc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	276	171	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10265084	10265084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	207	333	0	ENST00000340748.4:c.1856C>A	p.Thr619Asn	p.T619N	ENST00000340748		619	aCc/aAc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610312	10610312	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	377	226	1	ENST00000171111.5:c.398T>G	p.Met133Arg	p.M133R	ENST00000171111	NM_203500.1	133	aTg/aGg																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66905909	66905909	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	293	340	0	ENST00000374690.3:c.1826G>T	p.Arg609Met	p.R609M	ENST00000374690	NM_000044.3	609	aGg/aTg																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100617180	100617180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	217	340	0	ENST00000308731.7:c.569C>A	p.Pro190Gln	p.P190Q	ENST00000308731	NM_000061.2	190	cCa/cAa																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24167583	24167585	+	frameshift_variant	Frame_Shift_Ins	INS	CAG	CAG	TTAA			P-0004087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	160	104	0	ENST00000263121.7:c.967_969delinsTTAA	p.Gln323LeufsTer38	p.Q323Lfs*38	ENST00000263121	NM_003073.3	323	CAG/TTAA																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49928735	49928735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	71	628	0	ENST00000296474.3:c.3539C>T	p.Pro1180Leu	p.P1180L	ENST00000296474	NM_002447.2	1180	cCc/cTc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711904	89711904	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0006527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	65	279	0	ENST00000371953.3:c.522T>G	p.Tyr174Ter	p.Y174*	ENST00000371953	NM_000314.4	174	taT/taG																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115888	8115889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	43	425	0	ENST00000346208.3:c.1236dupC	p.Ser413GlnfsTer94	p.S413Qfs*94	ENST00000346208		412	tcc/tCcc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	433	463	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	105	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	148	208	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	242	502	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42795006	42795006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	257	368	0	ENST00000575354.2:c.2086C>T	p.Arg696Trp	p.R696W	ENST00000575354	NM_015125.3	696	Cgg/Tgg																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118377298	118377298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	288	501	0	ENST00000534358.1:c.10691G>A	p.Arg3564Gln	p.R3564Q	ENST00000534358	NM_005933.3	3564	cGg/cAg																																												NEWRECORD																																		
SH2D1A	0	MSKCC	GRCh37	X	123504036	123504036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	29	243	0	ENST00000371139.4:c.212G>T	p.Gly71Val	p.G71V	ENST00000371139	NM_001114937.2	71	gGg/gTg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175612	112175613	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CACCT			P-0007391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1407	356	589	0	ENST00000257430.4:c.4323_4327dup	p.Pro1443HisfsTer32	p.P1443Hfs*32	ENST00000257430	NM_000038.5	1441	cca/cCACCTca																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0013617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	117	411	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0013617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	162	606	0	ENST00000346208.3:c.1002_1003dup	p.Asp335GlyfsTer21	p.D335Gfs*21	ENST00000346208		333	-/GG																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	177	193	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226549740	226549740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	268	243	0	ENST00000366794.5:c.2893G>A	p.Asp965Asn	p.D965N	ENST00000366794	NM_001618.3	965	Gat/Aat																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47158207	47158207	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	137	227	0	ENST00000409792.3:c.4492C>T	p.Gln1498Ter	p.Q1498*	ENST00000409792	NM_014159.6	1498	Cag/Tag																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66729156	66729156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	242	317	0	ENST00000307102.5:c.364A>G	p.Asn122Asp	p.N122D	ENST00000307102	NM_002755.3	122	Aac/Gac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578200	7578222	+	frameshift_variant	Frame_Shift_Del	DEL	CCACACTATGTCGAAAAGTGTTT	CCACACTATGTCGAAAAGTGTTT	-			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	248	325	0	ENST00000269305.4:c.627_649del	p.Arg209SerfsTer5	p.R209Sfs*5	ENST00000269305	NM_001126112.2	209	agAAACACTTTTCGACATAGTGTGGtg/agtg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575131	48575132	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	235	295	1	ENST00000342988.3:c.325_326del	p.Leu109LysfsTer4	p.L109Kfs*4	ENST00000342988	NM_005359.5	109	CTa/a																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164156	47164157	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	103	183	0	ENST00000409792.3:c.1968_1969dup	p.Lys657IlefsTer3	p.K657Ifs*3	ENST00000409792	NM_014159.6	657	aaa/aTAaa																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39593533	39593533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	31	247	0	ENST00000262039.4:c.1298C>T	p.Ser433Phe	p.S433F	ENST00000262039	NM_002647.2	433	tCt/tTt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	81	382	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248528	212248528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	126	661	2	ENST00000342788.4:c.3739C>A	p.Leu1247Met	p.L1247M	ENST00000342788	NM_005235.2	1247	Ctg/Atg																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86669981	86669981	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	49	266	0	ENST00000274376.6:c.1778T>G	p.Val593Gly	p.V593G	ENST00000274376	NM_002890.2	593	gTc/gGc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118345028	118345028	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	61	211	0	ENST00000534358.1:c.3154C>T	p.Gln1052Ter	p.Q1052*	ENST00000534358	NM_005933.3	1052	Cag/Tag																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21563321	21563321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	77	615	0	ENST00000382592.4:c.598G>A	p.Gly200Ser	p.G200S	ENST00000382592	NM_014572.2	200	Ggc/Agc																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81528521	81528521	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	98	516	0	ENST00000298171.2:c.200T>A	p.Ile67Asn	p.I67N	ENST00000298171	NM_000369.2	67	aTt/aAt																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81954830	81954830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	137	708	0	ENST00000359376.3:c.2263G>A	p.Val755Ile	p.V755I	ENST00000359376	NM_002661.3	755	Gtc/Atc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593539	48593539	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	71	283	0	ENST00000342988.3:c.1290C>A	p.Tyr430Ter	p.Y430*	ENST00000342988	NM_005359.5	430	taC/taA																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46125076	46125076	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AG			P-0008919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	85	417	1	ENST00000334344.6:c.263delinsAG	p.Ala88GlufsTer23	p.A88Efs*23	ENST00000334344	NM_152641.2	88	gCt/gAGt																																												NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	23	268	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131927613	131927613	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	21	232	0	ENST00000265335.6:c.1680T>G	p.Ser560Arg	p.S560R	ENST00000265335		560	agT/agG																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162864467	162864467	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	38	274	1	ENST00000366898.1:c.46G>T	p.Glu16Ter	p.E16*	ENST00000366898	NM_004562.2	16	Gag/Tag																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59763390	59763390	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3786	238	323	0	ENST00000259008.2:c.2712C>A	p.Asp904Glu	p.D904E	ENST00000259008	NM_032043.2	904	gaC/gaA																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	71	104	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	99	183	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
MYCL1	0	MSKCC	GRCh37	1	40363243	40363243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	131	212	0	ENST00000397332.2:c.986C>T	p.Ser329Leu	p.S329L	ENST00000397332	NM_001033082.2	329	tCg/tTg																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25457261	25457261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	86	169	0	ENST00000264709.3:c.2626G>A	p.Asp876Asn	p.D876N	ENST00000264709	NM_175629.2	876	Gac/Aac																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61149506	61149506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	165	251	0	ENST00000295025.8:c.1696G>C	p.Asp566His	p.D566H	ENST00000295025	NM_002908.2	566	Gac/Cac																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198288537	198288537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	162	325	0	ENST00000335508.6:c.190G>A	p.Glu64Lys	p.E64K	ENST00000335508	NM_012433.2	64	Gaa/Aaa																																												NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187446247	187446247	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	81	175	0	ENST00000232014.4:c.1441C>T	p.Gln481Ter	p.Q481*	ENST00000232014	NM_001130845.1	481	Cag/Tag																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55979645	55979645	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	95	217	0	ENST00000263923.4:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000263923	NM_002253.2	268	Cag/Tag																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32191635	32191635	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	140	497	0	ENST00000375023.3:c.71G>C	p.Arg24Thr	p.R24T	ENST00000375023	NM_004557.3	24	aGa/aCa																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93641045	93641045	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	46	101	0	ENST00000375746.1:c.1392-1G>C		p.X464_splice	ENST00000375746	NM_001174167.1	464																																													NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412639	139412639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	84	210	0	ENST00000277541.6:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000277541	NM_017617.3	402	tCg/tTg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108117753	108117753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	102	245	0	ENST00000278616.4:c.964G>A	p.Glu322Lys	p.E322K	ENST00000278616	NM_000051.3	322	Gag/Aag																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18443910	18443910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	103	262	0	ENST00000266497.5:c.883G>T	p.Asp295Tyr	p.D295Y	ENST00000266497		295	Gat/Tat																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	115	190	0	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578262	7578262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	158	380	0	ENST00000269305.4:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000269305	NM_001126112.2	196	cGa/cAa																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47688735	47688735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	193	337	0	ENST00000347630.2:c.565G>A	p.Glu189Lys	p.E189K	ENST00000347630	NM_001007230.1	189	Gag/Aag																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40980877	40980877	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	61	160	0	ENST00000373198.4:c.1609A>G	p.Ser537Gly	p.S537G	ENST00000373198	NM_133170.3	537	Agc/Ggc																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57466809	57466809	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200163406		P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	83	230	0	ENST00000371085.3:c.28G>C	p.Glu10Gln	p.E10Q	ENST00000371085	NM_000516.4	10	Gag/Cag																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68862100	68862103	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	151	269	0	ENST00000261769.5:c.2190_2193delTCTT	p.Leu731GlyfsTer38	p.L731Gfs*38	ENST00000261769	NM_004360.3	730	TTTCtt/tt																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56183246	56183247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	236	177	0	ENST00000399503.3:c.4158dup	p.Ala1387CysfsTer33	p.A1387Cfs*33	ENST00000399503	NM_005921.1	1386	att/aTtt																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178029	56178030	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0003987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	125	228	0	ENST00000399503.3:c.3005_3006del	p.Ser1002Ter	p.S1002*	ENST00000399503	NM_005921.1	1001	gTC/g																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	76	98	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729687	41729687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	226	481	1	ENST00000242208.4:c.842C>T	p.Ala281Val	p.A281V	ENST00000242208	NM_002192.2	281	gCa/gTa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118371763	118371763	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	171	286	0	ENST00000534358.1:c.6220A>G	p.Ile2074Val	p.I2074V	ENST00000534358	NM_005933.3	2074	Ata/Gta																																												NEWRECORD																																		
H3F3B	0	MSKCC	GRCh37	17	73774995	73774995	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	98	187	0	ENST00000254810.4:c.178G>T	p.Glu60Ter	p.E60*	ENST00000254810	NM_005324.3	60	Gag/Tag																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41560094	41560094	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	245	376	2	ENST00000263253.7:c.3766C>T	p.Gln1256Ter	p.Q1256*	ENST00000263253	NM_001429.3	1256	Cag/Tag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44922669	44922670	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	170	307	0	ENST00000377967.4:c.1531dup	p.Arg511LysfsTer15	p.R511Kfs*15	ENST00000377967	NM_021140.2	510	-/A																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89346177	89346178	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	117	160	0	ENST00000301030.4:c.6772dup	p.Ala2258GlyfsTer2	p.A2258Gfs*2	ENST00000301030	NM_001256183.1	2258	gct/gGct																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662481	227662481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	48	397	1	ENST00000305123.5:c.974G>A	p.Arg325His	p.R325H	ENST00000305123	NM_005544.2	325	cGt/cAt																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612268	189612268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	84	395	0	ENST00000264731.3:c.2020C>T	p.Arg674Cys	p.R674C	ENST00000264731	NM_003722.4	674	Cgc/Tgc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	27	619	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180057642	180057642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150416750		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	249	549	0	ENST00000261937.6:c.313G>A	p.Asp105Asn	p.D105N	ENST00000261937	NM_182925.4	105	Gac/Aac																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198270085	198270085	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	143	594	1	ENST00000335508.6:c.1351C>T	p.Arg451Ter	p.R451*	ENST00000335508	NM_012433.2	451	Cga/Tga																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45008529	45008529	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	330	458	0	ENST00000558401.1:c.349C>T	p.Arg117Ter	p.R117*	ENST00000558401	NM_004048.2	117	Cga/Tga																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765883	66765883	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	306	634	1	ENST00000374690.3:c.895G>A	p.Ala299Thr	p.A299T	ENST00000374690	NM_000044.3	299	Gca/Aca																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	13	414	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	175	581	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546931	9546931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	89	446	0	ENST00000353224.5:c.1091C>T	p.Ser364Leu	p.S364L	ENST00000353224	NM_177990.2	364	tCg/tTg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	48	576	1	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16042434	16042434	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	133	610	0	ENST00000268712.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000268712	NM_006311.3	414	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177049	112177049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	232	834	3	ENST00000257430.4:c.5758C>T	p.Arg1920Ter	p.R1920*	ENST00000257430	NM_000038.5	1920	Cga/Tga																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152201874	152201874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	154	446	2	ENST00000206249.3:c.728G>A	p.Arg243His	p.R243H	ENST00000206249	NM_000125.3	243	cGt/cAt																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	182	480	1	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	240	579	2	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	184	557	0	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41743864	41743864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	204	550	0	ENST00000301178.4:c.799G>A	p.Asp267Asn	p.D267N	ENST00000301178	NM_021913.4	267	Gat/Aat																																												NEWRECORD																																		
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	248	625	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178938835	178938835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	23	26	0	ENST00000263967.3:c.2077C>T	p.Arg693Cys	p.R693C	ENST00000263967	NM_006218.2	693	Cgt/Tgt																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	169	522	0	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190660639	190660639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	155	426	0	ENST00000441310.2:c.277C>T	p.Arg93Cys	p.R93C	ENST00000441310	NM_000534.4	93	Cgt/Tgt																																												NEWRECORD																																		
KDM6A	7403	MSKCC	GRCh37	X	44922973	44922973	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	457	752	2	ENST00000377967.4:c.1834C>T	p.Arg612Ter	p.R612*	ENST00000377967	NM_021140.2	612	Cga/Tga																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72890221	72890221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	123	556	0	ENST00000325599.8:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000325599	NM_018130.2	154	cGa/cAa																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41275290	41275290	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs113411271		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	71	448	0	ENST00000349496.5:c.1456C>T	p.Arg486Cys	p.R486C	ENST00000349496	NM_001904.3	486	Cgc/Tgc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	202	572	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411444	63411444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	259	658	1	ENST00000330258.3:c.1723C>T	p.Arg575Trp	p.R575W	ENST00000330258	NM_152424.3	575	Cgg/Tgg																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116418997	116418997	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	41	352	0	ENST00000397752.3:c.3508C>T	p.Arg1170Ter	p.R1170*	ENST00000397752	NM_000245.2	1170	Cga/Tga																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133760819	133760819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	202	478	0	ENST00000318560.5:c.3142G>A	p.Glu1048Lys	p.E1048K	ENST00000318560	NM_005157.4	1048	Gag/Aag																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484414	57484414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	357	470	0	ENST00000371085.3:c.595C>T	p.Arg199Cys	p.R199C	ENST00000371085	NM_000516.4	199	Cgc/Tgc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5225773	5225773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	91	527	0	ENST00000357368.4:c.2459G>A	p.Arg820His	p.R820H	ENST00000357368	NM_002850.3	820	cGc/cAc																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59770824	59770824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45572934		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	204	589	1	ENST00000259008.2:c.2542C>T	p.Arg848Cys	p.R848C	ENST00000259008	NM_032043.2	848	Cgc/Tgc																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	394896	394896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	153	477	1	ENST00000380956.4:c.292C>T	p.Arg98Trp	p.R98W	ENST00000380956	NM_001195286.1	98	Cgg/Tgg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108216476	108216477	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	211	500	1	ENST00000278616.4:c.8432dupA	p.Ser2812ValfsTer3	p.S2812Vfs*3	ENST00000278616	NM_000051.3	2809	caa/cAaa																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134142	41134142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144907712		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	122	727	0	ENST00000379561.5:c.1486G>A	p.Val496Ile	p.V496I	ENST00000379561	NM_002015.3	496	Gtc/Atc																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243716138	243716138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	198	634	0	ENST00000263826.5:c.1056G>T	p.Glu352Asp	p.E352D	ENST00000263826	NM_005465.4	352	gaG/gaT																																												NEWRECORD																																		
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	48	405	1	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	247	432	1	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66213873	66213873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	61	613	1	ENST00000273854.3:c.2557C>T	p.Arg853Ter	p.R853*	ENST00000273854	NM_004439.5	853	Cga/Tga																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48955481	48955481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	81	600	0	ENST00000267163.4:c.1597G>A	p.Glu533Lys	p.E533K	ENST00000267163	NM_000321.2	533	Gaa/Aaa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118366990	118366990	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	83	612	0	ENST00000534358.1:c.5572C>T	p.Arg1858Ter	p.R1858*	ENST00000534358	NM_005933.3	1858	Cga/Tga																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	192	507	1	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																												NEWRECORD																																		
CDK6	0	MSKCC	GRCh37	7	92252390	92252390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	194	440	1	ENST00000265734.4:c.658C>T	p.Arg220Cys	p.R220C	ENST00000265734	NM_001259.6	220	Cgt/Tgt																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81331980	81331980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	203	625	0	ENST00000222390.5:c.2104C>T	p.Arg702Cys	p.R702C	ENST00000222390	NM_000601.4	702	Cgt/Tgt																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9624840	9624840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	113	534	0	ENST00000353224.5:c.137C>T	p.Thr46Met	p.T46M	ENST00000353224	NM_177990.2	46	aCg/aTg																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47698180	47698180	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	229	506	0	ENST00000233146.2:c.1738G>T	p.Glu580Ter	p.E580*	ENST00000233146	NM_000251.2	580	Gaa/Taa																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	51	411	2	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938090	76938090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	270	589	0	ENST00000373344.5:c.2658G>T	p.Glu886Asp	p.E886D	ENST00000373344	NM_000489.3	886	gaG/gaT																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	228	527	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64132927	64132927	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145356210		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	202	523	2	ENST00000334205.4:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000334205	NM_003942.2	354	cGa/cAa																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65339175	65339175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180823763		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	188	445	0	ENST00000342505.4:c.361G>A	p.Asp121Asn	p.D121N	ENST00000342505	NM_002227.2	121	Gac/Aac																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87570260	87570260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	120	445	0	ENST00000277120.3:c.2000C>T	p.Ser667Leu	p.S667L	ENST00000277120		667	tCg/tTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	197	469	0	ENST00000269305.4:c.497C>A	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tAa																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073739	8073739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	659	866	0	ENST00000377482.5:c.920C>T	p.Ser307Leu	p.S307L	ENST00000377482	NM_018948.3	307	tCg/tTg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47162904	47162904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	221	622	0	ENST00000409792.3:c.3222G>T	p.Lys1074Asn	p.K1074N	ENST00000409792	NM_014159.6	1074	aaG/aaT																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55214404	55214404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	119	441	1	ENST00000275493.2:c.530C>T	p.Ser177Leu	p.S177L	ENST00000275493	NM_005228.3	177	tCg/tTg																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073588	8073588	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	303	764	0	ENST00000377482.5:c.1071G>T	p.Lys357Asn	p.K357N	ENST00000377482	NM_018948.3	357	aaG/aaT																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9781554	9781554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	202	514	0	ENST00000377346.4:c.1864G>A	p.Glu622Lys	p.E622K	ENST00000377346	NM_005026.3	622	Gag/Aag																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11182154	11182154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	176	636	2	ENST00000361445.4:c.6692C>T	p.Ser2231Leu	p.S2231L	ENST00000361445	NM_004958.3	2231	tCg/tTg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11269467	11269467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	57	563	0	ENST00000361445.4:c.3703C>T	p.Arg1235Trp	p.R1235W	ENST00000361445	NM_004958.3	1235	Cgg/Tgg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11317015	11317015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	41	451	2	ENST00000361445.4:c.479G>A	p.Arg160His	p.R160H	ENST00000361445	NM_004958.3	160	cGc/cAc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16245451	16245451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	120	487	0	ENST00000375759.3:c.1426C>T	p.Pro476Ser	p.P476S	ENST00000375759	NM_015001.2	476	Cct/Tct																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16256750	16256750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	169	516	1	ENST00000375759.3:c.4015C>T	p.Arg1339Cys	p.R1339C	ENST00000375759	NM_015001.2	1339	Cgt/Tgt																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16260188	16260188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	31	306	1	ENST00000375759.3:c.7453G>A	p.Ala2485Thr	p.A2485T	ENST00000375759	NM_015001.2	2485	Gcc/Acc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16261472	16261472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	166	491	0	ENST00000375759.3:c.8737G>A	p.Glu2913Lys	p.E2913K	ENST00000375759	NM_015001.2	2913	Gag/Aag																																												NEWRECORD																																		
MUTYH	0	MSKCC	GRCh37	1	45799114	45799114	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	245	618	1	ENST00000372115.3:c.277G>T	p.Glu93Ter	p.E93*	ENST00000372115	NM_001048171.1	93	Gag/Tag																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46531836	46531836	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	199	471	1	ENST00000262741.5:c.511G>T	p.Glu171Ter	p.E171*	ENST00000262741	NM_003629.3	171	Gaa/Taa																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46743755	46743755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	87	546	0	ENST00000371975.4:c.2045G>A	p.Arg682Gln	p.R682Q	ENST00000371975	NM_003579.3	682	cGa/cAa																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248229	59248229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	15	30	0	ENST00000371222.2:c.514A>T	p.Asn172Tyr	p.N172Y	ENST00000371222	NM_002228.3	172	Aac/Tac																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248575	59248575	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	103	556	0	ENST00000371222.2:c.168G>T	p.Lys56Asn	p.K56N	ENST00000371222	NM_002228.3	56	aaG/aaT																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248629	59248629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	231	526	0	ENST00000371222.2:c.114G>T	p.Met38Ile	p.M38I	ENST00000371222	NM_002228.3	38	atG/atT																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65309764	65309764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	182	459	1	ENST00000342505.4:c.2386G>T	p.Asp796Tyr	p.D796Y	ENST00000342505	NM_002227.2	796	Gac/Tac																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	71873218	71873218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	114	791	3	ENST00000357731.5:c.976G>A	p.Ala326Thr	p.A326T	ENST00000357731	NM_173808.2	326	Gct/Act																																												NEWRECORD																																		
FAM46C	0	MSKCC	GRCh37	1	118165662	118165662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	231	531	0	ENST00000369448.3:c.172C>T	p.Arg58Trp	p.R58W	ENST00000369448	NM_017709.3	58	Cgg/Tgg																																												NEWRECORD																																		
FAM46C	0	MSKCC	GRCh37	1	118166010	118166010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	199	463	0	ENST00000369448.3:c.520C>T	p.Arg174Trp	p.R174W	ENST00000369448	NM_017709.3	174	Cgg/Tgg																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120459215	120459215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	117	525	0	ENST00000256646.2:c.6130C>T	p.Arg2044Cys	p.R2044C	ENST00000256646	NM_024408.3	2044	Cgt/Tgt																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120462920	120462920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	48	425	0	ENST00000256646.2:c.5411C>T	p.Ser1804Leu	p.S1804L	ENST00000256646	NM_024408.3	1804	tCg/tTg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156834588	156834588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	213	505	1	ENST00000524377.1:c.356G>A	p.Arg119His	p.R119H	ENST00000524377	NM_002529.3	119	cGc/cAc																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156841520	156841520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	197	502	0	ENST00000524377.1:c.823G>A	p.Glu275Lys	p.E275K	ENST00000524377	NM_002529.3	275	Gag/Aag																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156844404	156844404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	109	743	2	ENST00000524377.1:c.1237G>A	p.Glu413Lys	p.E413K	ENST00000524377	NM_002529.3	413	Gaa/Aaa																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162740230	162740230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34869543		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	207	586	0	ENST00000367921.3:c.1432C>T	p.Arg478Cys	p.R478C	ENST00000367921	NM_006182.2	478	Cgc/Tgc																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162740264	162740264	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	210	550	1	ENST00000367921.3:c.1466G>A	p.Arg489Gln	p.R489Q	ENST00000367921	NM_006182.2	489	cGa/cAa																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193219807	193219807	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	120	356	0	ENST00000367435.3:c.1561T>C	p.Tyr521His	p.Y521H	ENST00000367435	NM_024529.4	521	Tac/Cac																																												NEWRECORD																																		
IL10	0	MSKCC	GRCh37	1	206945657	206945657	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	241	640	1	ENST00000423557.1:c.124C>T	p.Arg42Ter	p.R42*	ENST00000423557	NM_000572.2	42	Cga/Tga																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241661199	241661199	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201115573		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	220	506	0	ENST00000366560.3:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000366560	NM_000143.3	488	Gaa/Aaa																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243858945	243858945	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	124	586	2	ENST00000263826.5:c.120G>T	p.Glu40Asp	p.E40D	ENST00000263826	NM_005465.4	40	gaG/gaT																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47690253	47690253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	134	585	0	ENST00000233146.2:c.1470G>T	p.Lys490Asn	p.K490N	ENST00000233146	NM_000251.2	490	aaG/aaT																																												NEWRECORD																																		
MSH6	2956	MSKCC	GRCh37	2	48033396	48033396	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	227	640	0	ENST00000234420.5:c.3700G>T	p.Glu1234Ter	p.E1234*	ENST00000234420	NM_000179.2	1234	Gaa/Taa																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61709651	61709651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	196	408	0	ENST00000401558.2:c.2836C>A	p.Leu946Ile	p.L946I	ENST00000401558	NM_003400.3	946	Ctt/Att																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	114	574	2	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99152649	99152649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	250	635	0	ENST00000074304.5:c.445C>A	p.His149Asn	p.H149N	ENST00000074304	NM_001134224.1	149	Cat/Aat																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190656594	190656594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	196	602	0	ENST00000441310.2:c.59C>T	p.Ser20Leu	p.S20L	ENST00000441310	NM_000534.4	20	tCg/tTg																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190719513	190719513	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	183	519	0	ENST00000441310.2:c.1515A>C	p.Lys505Asn	p.K505N	ENST00000441310	NM_000534.4	505	aaA/aaC																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198266828	198266828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	186	493	1	ENST00000335508.6:c.2104C>T	p.Arg702Trp	p.R702W	ENST00000335508	NM_012433.2	702	Cgg/Tgg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212570064	212570064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	177	521	0	ENST00000342788.4:c.1177C>T	p.Arg393Trp	p.R393W	ENST00000342788	NM_005235.2	393	Cgg/Tgg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212812263	212812263	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	71	564	0	ENST00000342788.4:c.313A>T	p.Ile105Phe	p.I105F	ENST00000342788	NM_005235.2	105	Att/Ttt																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227660213	227660213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	194	532	1	ENST00000305123.5:c.3242G>A	p.Arg1081His	p.R1081H	ENST00000305123	NM_005544.2	1081	cGc/cAc																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12650389	12650389	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	179	523	0	ENST00000251849.4:c.457G>T	p.Asp153Tyr	p.D153Y	ENST00000251849	NM_002880.3	153	Gac/Tac																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47158222	47158222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	98	396	0	ENST00000409792.3:c.4477G>T	p.Asp1493Tyr	p.D1493Y	ENST00000409792	NM_014159.6	1493	Gat/Tat																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47162039	47162039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	220	521	0	ENST00000409792.3:c.4087G>A	p.Asp1363Asn	p.D1363N	ENST00000409792	NM_014159.6	1363	Gac/Aac																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47162812	47162812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	147	396	0	ENST00000409792.3:c.3314G>T	p.Arg1105Ile	p.R1105I	ENST00000409792	NM_014159.6	1105	aGa/aTa																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49933462	49933462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	267	662	1	ENST00000296474.3:c.2728C>T	p.Arg910Trp	p.R910W	ENST00000296474	NM_002447.2	910	Cgg/Tgg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52637690	52637690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	244	547	0	ENST00000394830.3:c.2626C>T	p.Arg876Cys	p.R876C	ENST00000394830	NM_018313.4	876	Cgt/Tgt																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52685797	52685797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	221	582	0	ENST00000394830.3:c.675G>T	p.Lys225Asn	p.K225N	ENST00000394830	NM_018313.4	225	aaG/aaT																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71090524	71090524	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	193	634	1	ENST00000318789.4:c.824C>T	p.Ala275Val	p.A275V	ENST00000318789	NM_032682.5	275	gCc/gTc																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259265	89259265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	53	564	0	ENST00000336596.2:c.409G>A	p.Glu137Lys	p.E137K	ENST00000336596	NM_005233.5	137	Gag/Aag																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259409	89259409	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	244	778	0	ENST00000336596.2:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000336596	NM_005233.5	185	Gat/Tat																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259413	89259413	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	79	779	0	ENST00000336596.2:c.557T>C	p.Val186Ala	p.V186A	ENST00000336596	NM_005233.5	186	gTt/gCt																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89390995	89390995	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144727411		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	164	637	0	ENST00000336596.2:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000336596	NM_005233.5	354	cGg/cAg																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138403560	138403560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	211	609	3	ENST00000289153.2:c.2222C>T	p.Ala741Val	p.A741V	ENST00000289153	NM_006219.2	741	gCc/gTc																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138417901	138417901	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	180	400	0	ENST00000289153.2:c.1618G>T	p.Glu540Ter	p.E540*	ENST00000289153	NM_006219.2	540	Gaa/Taa																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138423304	138423304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	170	502	0	ENST00000289153.2:c.1562G>A	p.Ser521Asn	p.S521N	ENST00000289153	NM_006219.2	521	aGt/aAt																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142231170	142231170	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	263	633	0	ENST00000350721.4:c.4784A>C	p.Lys1595Thr	p.K1595T	ENST00000350721	NM_001184.3	1595	aAa/aCa																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142269009	142269009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	217	646	0	ENST00000350721.4:c.2941G>A	p.Val981Ile	p.V981I	ENST00000350721	NM_001184.3	981	Gtt/Att																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185191251	185191251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	68	341	0	ENST00000265026.3:c.2132C>A	p.Ser711Tyr	p.S711Y	ENST00000265026	NM_004721.4	711	tCt/tAt																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185191437	185191437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	114	486	0	ENST00000265026.3:c.2318C>A	p.Ser773Tyr	p.S773Y	ENST00000265026	NM_004721.4	773	tCt/tAt																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189582042	189582042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	205	481	0	ENST00000264731.3:c.601C>A	p.Leu201Ile	p.L201I	ENST00000264731	NM_003722.4	201	Ctc/Atc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808377	1808377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	62	486	0	ENST00000260795.2:c.2135G>A	p.Arg712His	p.R712H	ENST00000260795		712	cGc/cAc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55140793	55140793	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	178	390	1	ENST00000257290.5:c.1653+1G>A		p.X551_splice	ENST00000257290	NM_006206.4	551																																													NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55573323	55573323	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	232	556	2	ENST00000288135.5:c.985G>T	p.Glu329Ter	p.E329*	ENST00000288135	NM_000222.2	329	Gaa/Taa																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55955615	55955615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	108	549	0	ENST00000263923.4:c.3330G>T	p.Lys1110Asn	p.K1110N	ENST00000263923	NM_002253.2	1110	aaG/aaT																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55981166	55981166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	180	686	0	ENST00000263923.4:c.533C>A	p.Ser178Tyr	p.S178Y	ENST00000263923	NM_002253.2	178	tCc/tAc																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66197845	66197845	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	39	423	0	ENST00000273854.3:c.2854G>T	p.Val952Leu	p.V952L	ENST00000273854	NM_004439.5	952	Gta/Tta																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66201816	66201816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	72	446	1	ENST00000273854.3:c.2686C>T	p.Arg896Cys	p.R896C	ENST00000273854	NM_004439.5	896	Cgt/Tgt																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66231757	66231757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	105	504	0	ENST00000273854.3:c.1943G>A	p.Arg648Lys	p.R648K	ENST00000273854	NM_004439.5	648	aGa/aAa																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66286171	66286171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	109	608	1	ENST00000273854.3:c.1515G>T	p.Lys505Asn	p.K505N	ENST00000273854	NM_004439.5	505	aaG/aaT																																												NEWRECORD																																		
EIF4E	0	MSKCC	GRCh37	4	99812457	99812457	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	201	537	0	ENST00000280892.6:c.212A>G	p.Asp71Gly	p.D71G	ENST00000280892	NM_001130678.1	71	gAt/gGt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106155491	106155491	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	55	629	0	ENST00000380013.4:c.392G>T	p.Arg131Ile	p.R131I	ENST00000380013	NM_001127208.2	131	aGa/aTa																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106164897	106164897	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	78	358	0	ENST00000380013.4:c.3765C>A	p.Tyr1255Ter	p.Y1255*	ENST00000380013	NM_001127208.2	1255	taC/taA																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106180834	106180834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	163	536	0	ENST00000380013.4:c.3862G>T	p.Gly1288Cys	p.G1288C	ENST00000380013	NM_001127208.2	1288	Ggt/Tgt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106196355	106196355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	263	643	0	ENST00000380013.4:c.4688C>A	p.Ser1563Tyr	p.S1563Y	ENST00000380013	NM_001127208.2	1563	tCt/tAt																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153332586	153332586	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs768666009		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	96	601	2	ENST00000281708.4:c.370G>A	p.Asp124Asn	p.D124N	ENST00000281708	NM_033632.3	124	Gat/Aat																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153332946	153332946	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	72	329	0	ENST00000281708.4:c.10G>T	p.Glu4Ter	p.E4*	ENST00000281708	NM_033632.3	4	Gaa/Taa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187518306	187518306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	13	151	0	ENST00000441802.2:c.12388G>A	p.Glu4130Lys	p.E4130K	ENST00000441802	NM_005245.3	4130	Gag/Aag																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187524933	187524933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	79	642	2	ENST00000441802.2:c.10747G>A	p.Asp3583Asn	p.D3583N	ENST00000441802	NM_005245.3	3583	Gac/Aac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187527280	187527280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	201	410	0	ENST00000441802.2:c.10294G>A	p.Asp3432Asn	p.D3432N	ENST00000441802	NM_005245.3	3432	Gat/Aat																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187532645	187532645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	247	514	0	ENST00000441802.2:c.9748C>A	p.Leu3250Ile	p.L3250I	ENST00000441802	NM_005245.3	3250	Ctt/Att																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1260645	1260645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	241	480	1	ENST00000310581.5:c.2914C>T	p.Arg972Cys	p.R972C	ENST00000310581	NM_198253.2	972	Cgc/Tgc																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38959942	38959942	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	206	623	0	ENST00000357387.3:c.1990G>T	p.Gly664Ter	p.G664*	ENST00000357387	NM_152756.3	664	Gga/Tga																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38960001	38960001	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	86	494	0	ENST00000357387.3:c.1931G>A	p.Arg644Lys	p.R644K	ENST00000357387	NM_152756.3	644	aGa/aAa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56161716	56161716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	70	525	0	ENST00000399503.3:c.1213C>T	p.Arg405Cys	p.R405C	ENST00000399503	NM_005921.1	405	Cgt/Tgt																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177587	56177587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	214	618	1	ENST00000399503.3:c.2560C>T	p.Arg854Cys	p.R854C	ENST00000399503	NM_005921.1	854	Cgc/Tgc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178104	56178104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	142	413	0	ENST00000399503.3:c.3077C>A	p.Ser1026Tyr	p.S1026Y	ENST00000399503	NM_005921.1	1026	tCt/tAt																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57750466	57750466	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	216	658	0	ENST00000274289.3:c.2002G>T	p.Glu668Ter	p.E668*	ENST00000274289	NM_006622.3	668	Gaa/Taa																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57751901	57751901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148954251		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	241	584	0	ENST00000274289.3:c.1336C>T	p.Arg446Trp	p.R446W	ENST00000274289	NM_006622.3	446	Cgg/Tgg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67592027	67592027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	147	480	1	ENST00000274335.5:c.1843G>T	p.Asp615Tyr	p.D615Y	ENST00000274335		615	Gat/Tat																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86672219	86672219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	103	297	0	ENST00000274376.6:c.2021G>A	p.Arg674His	p.R674H	ENST00000274376	NM_002890.2	674	cGc/cAc																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86672842	86672842	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	131	390	0	ENST00000274376.6:c.2329G>T	p.Glu777Ter	p.E777*	ENST00000274376	NM_002890.2	777	Gaa/Taa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112111392	112111392	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	65	498	1	ENST00000257430.4:c.489G>T	p.Gln163His	p.Q163H	ENST00000257430	NM_000038.5	163	caG/caT																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173977	112173977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	117	452	0	ENST00000257430.4:c.2686G>T	p.Ala896Ser	p.A896S	ENST00000257430	NM_000038.5	896	Gcc/Tcc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174119	112174119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	167	501	0	ENST00000257430.4:c.2828C>A	p.Ser943Ter	p.S943*	ENST00000257430	NM_000038.5	943	tCa/tAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175780	112175780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	147	455	0	ENST00000257430.4:c.4489C>T	p.Pro1497Ser	p.P1497S	ENST00000257430	NM_000038.5	1497	Cca/Tca																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176008	112176008	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	176	479	0	ENST00000257430.4:c.4717G>T	p.Glu1573Ter	p.E1573*	ENST00000257430	NM_000038.5	1573	Gaa/Taa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177839	112177839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	133	502	0	ENST00000257430.4:c.6548C>A	p.Ser2183Tyr	p.S2183Y	ENST00000257430	NM_000038.5	2183	tCt/tAt																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131911614	131911614	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	132	481	0	ENST00000265335.6:c.359G>T	p.Arg120Ile	p.R120I	ENST00000265335		120	aGa/aTa																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131931471	131931471	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	160	431	1	ENST00000265335.6:c.2176C>T	p.Arg726Cys	p.R726C	ENST00000265335		726	Cgt/Tgt																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149498372	149498372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	214	553	1	ENST00000261799.4:c.2842C>T	p.Arg948Trp	p.R948W	ENST00000261799	NM_002609.3	948	Cgg/Tgg																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176671232	176671232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	222	561	0	ENST00000439151.2:c.4339G>A	p.Glu1447Lys	p.E1447K	ENST00000439151	NM_022455.4	1447	Gaa/Aaa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176707616	176707616	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	217	443	1	ENST00000439151.2:c.5673A>T	p.Glu1891Asp	p.E1891D	ENST00000439151	NM_022455.4	1891	gaA/gaT																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180048238	180048238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	56	397	2	ENST00000261937.6:c.2035C>T	p.Arg679Trp	p.R679W	ENST00000261937	NM_182925.4	679	Cgg/Tgg																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180051042	180051042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	118	431	0	ENST00000261937.6:c.1441G>T	p.Asp481Tyr	p.D481Y	ENST00000261937	NM_182925.4	481	Gac/Tac																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180057657	180057657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	239	538	0	ENST00000261937.6:c.298G>A	p.Glu100Lys	p.E100K	ENST00000261937	NM_182925.4	100	Gag/Aag																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	405083	405083	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	219	506	0	ENST00000380956.4:c.1165G>T	p.Glu389Ter	p.E389*	ENST00000380956	NM_001195286.1	389	Gag/Tag																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20480138	20480138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	58	586	0	ENST00000346618.3:c.455C>A	p.Thr152Asn	p.T152N	ENST00000346618	NM_001949.4	152	aCc/aAc																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20481526	20481526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	169	556	0	ENST00000346618.3:c.595G>A	p.Asp199Asn	p.D199N	ENST00000346618	NM_001949.4	199	Gat/Aat																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30672425	30672425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	83	585	2	ENST00000376406.3:c.4535C>A	p.Ser1512Tyr	p.S1512Y	ENST00000376406	NM_014641.2	1512	tCt/tAt																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32181576	32181576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	228	617	1	ENST00000375023.3:c.2209C>A	p.Pro737Thr	p.P737T	ENST00000375023	NM_004557.3	737	Cca/Aca																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93965655	93965655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	212	785	0	ENST00000369303.4:c.2273A>G	p.Asp758Gly	p.D758G	ENST00000369303	NM_004440.3	758	gAc/gGc																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94066675	94066675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	239	822	0	ENST00000369303.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000369303	NM_004440.3	362	Gat/Aat																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106555357	106555357	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	39	242	0	ENST00000369096.4:c.2474C>A	p.Pro825His	p.P825H	ENST00000369096	NM_001198.3	825	cCt/cAt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117609891	117609891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	149	648	1	ENST00000368508.3:c.6808G>A	p.Glu2270Lys	p.E2270K	ENST00000368508	NM_002944.2	2270	Gaa/Aaa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117642538	117642538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	205	793	0	ENST00000368508.3:c.5661G>T	p.Lys1887Asn	p.K1887N	ENST00000368508	NM_002944.2	1887	aaG/aaT																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117665330	117665330	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	194	654	0	ENST00000368508.3:c.4417A>G	p.Thr1473Ala	p.T1473A	ENST00000368508	NM_002944.2	1473	Aca/Gca																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137519320	137519320	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	62	508	0	ENST00000367739.4:c.1318A>G	p.Thr440Ala	p.T440A	ENST00000367739	NM_000416.2	440	Aca/Gca																																												NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137527407	137527407	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	142	385	0	ENST00000367739.4:c.239T>G	p.Ile80Ser	p.I80S	ENST00000367739	NM_000416.2	80	aTt/aGt																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138192453	138192453	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	81	461	0	ENST00000237289.4:c.89T>G	p.Phe30Cys	p.F30C	ENST00000237289	NM_001270507.1	30	tTt/tGt																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138202200	138202200	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3734553		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	178	425	0	ENST00000237289.4:c.2117G>A	p.Arg706Gln	p.R706Q	ENST00000237289	NM_001270507.1	706	cGa/cAa																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152265569	152265569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	118	447	1	ENST00000206249.3:c.1022C>T	p.Ser341Leu	p.S341L	ENST00000206249	NM_000125.3	341	tCg/tTg																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	161807901	161807901	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	151	427	1	ENST00000366898.1:c.1092C>A	p.Phe364Leu	p.F364L	ENST00000366898	NM_004562.2	364	ttC/ttA																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6031649	6031649	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs200640585		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	223	486	0	ENST00000265849.7:c.943C>T	p.Arg315Ter	p.R315*	ENST00000265849	NM_000535.5	315	Cga/Tga																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13946174	13946174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	146	448	0	ENST00000405192.2:c.922C>T	p.Arg308Trp	p.R308W	ENST00000405192	NM_001163147.1	308	Cgg/Tgg																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41739756	41739756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	263	850	0	ENST00000242208.4:c.217G>A	p.Asp73Asn	p.D73N	ENST00000242208	NM_002192.2	73	Gat/Aat																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50444384	50444384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	166	437	1	ENST00000331340.3:c.314C>T	p.Ser105Leu	p.S105L	ENST00000331340	NM_006060.4	105	tCg/tTg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55270242	55270242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	183	542	0	ENST00000275493.2:c.3195C>A	p.Phe1065Leu	p.F1065L	ENST00000275493	NM_005228.3	1065	ttC/ttA																																												NEWRECORD																																		
CDK6	0	MSKCC	GRCh37	7	92404101	92404101	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	234	463	0	ENST00000265734.4:c.278A>C	p.Lys93Thr	p.K93T	ENST00000265734	NM_001259.6	93	aAa/aCa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508514	106508514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	55	182	1	ENST00000359195.3:c.508G>A	p.Asp170Asn	p.D170N	ENST00000359195	NM_002649.2	170	Gac/Aac																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148504761	148504761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	87	573	1	ENST00000320356.2:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000320356	NM_004456.4	745	Gaa/Aaa																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148523708	148523708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	156	438	1	ENST00000320356.2:c.745G>A	p.Glu249Lys	p.E249K	ENST00000320356	NM_004456.4	249	Gaa/Aaa																																												NEWRECORD																																		
RHEB	0	MSKCC	GRCh37	7	151167676	151167676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	171	464	0	ENST00000262187.5:c.443C>A	p.Ser148Tyr	p.S148Y	ENST00000262187	NM_005614.3	148	tCt/tAt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151849924	151849924	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	59	547	1	ENST00000262189.6:c.12392G>T	p.Arg4131Ile	p.R4131I	ENST00000262189	NM_170606.2	4131	aGa/aTa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874122	151874122	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	234	586	0	ENST00000262189.6:c.8416C>A	p.Leu2806Ile	p.L2806I	ENST00000262189	NM_170606.2	2806	Ctc/Atc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151879229	151879229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	55	705	0	ENST00000262189.6:c.5716C>T	p.Arg1906Ter	p.R1906*	ENST00000262189	NM_170606.2	1906	Cga/Tga																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152055703	152055703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	255	625	1	ENST00000262189.6:c.219G>T	p.Glu73Asp	p.E73D	ENST00000262189	NM_170606.2	73	gaG/gaT																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152132768	152132768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	150	329	0	ENST00000262189.6:c.104G>T	p.Arg35Ile	p.R35I	ENST00000262189	NM_170606.2	35	aGa/aTa																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152357831	152357831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	291	718	0	ENST00000359321.1:c.76G>A	p.Glu26Lys	p.E26K	ENST00000359321	NM_005431.1	26	Gaa/Aaa																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38287386	38287386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	56	501	1	ENST00000425967.3:c.271C>T	p.Arg91Trp	p.R91W	ENST00000425967	NM_001174067.1	91	Cgg/Tgg																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38315038	38315038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	192	508	0	ENST00000425967.3:c.26G>T	p.Arg9Met	p.R9M	ENST00000425967	NM_001174067.1	9	aGg/aTg																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90993715	90993715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	157	347	0	ENST00000265433.3:c.208G>T	p.Asp70Tyr	p.D70Y	ENST00000265433	NM_002485.4	70	Gat/Tat																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	37015094	37015094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	192	528	0	ENST00000358127.4:c.310C>T	p.Arg104Cys	p.R104C	ENST00000358127	NM_001280556.1	104	Cgc/Tgc																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87482281	87482281	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	89	629	0	ENST00000277120.3:c.1568A>C	p.Lys523Thr	p.K523T	ENST00000277120		523	aAg/aCg																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	98011455	98011455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	184	596	0	ENST00000289081.3:c.119A>G	p.Gln40Arg	p.Q40R	ENST00000289081	NM_000136.2	40	cAg/cGg																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98224263	98224263	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	146	408	0	ENST00000331920.6:c.2578G>T	p.Asp860Tyr	p.D860Y	ENST00000331920	NM_000264.3	860	Gac/Tac																																												NEWRECORD																																		
PPP6C	0	MSKCC	GRCh37	9	127912029	127912029	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	276	777	0	ENST00000373547.4:c.841G>T	p.Glu281Ter	p.E281*	ENST00000373547	NM_002721.4	281	Gaa/Taa																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135781068	135781068	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	286	789	0	ENST00000298552.3:c.1897G>T	p.Gly633Ter	p.G633*	ENST00000298552	NM_001162426.1	633	Gga/Tga																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139400310	139400310	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	49	174	0	ENST00000277541.6:c.4038G>T	p.Glu1346Asp	p.E1346D	ENST00000277541	NM_017617.3	1346	gaG/gaT																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412302	139412302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	45	473	1	ENST00000277541.6:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000277541	NM_017617.3	448	cGa/cAa																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100366	8100366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	202	599	0	ENST00000346208.3:c.340C>A	p.Leu114Ile	p.L114I	ENST00000346208		114	Ctc/Atc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852488	63852488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	152	432	1	ENST00000279873.7:c.3266C>T	p.Ser1089Leu	p.S1089L	ENST00000279873	NM_032199.2	1089	tCg/tTg																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852527	63852527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	169	428	0	ENST00000279873.7:c.3305C>A	p.Ser1102Tyr	p.S1102Y	ENST00000279873	NM_032199.2	1102	tCt/tAt																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70406325	70406325	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	64	580	0	ENST00000373644.4:c.3839A>C	p.Lys1280Thr	p.K1280T	ENST00000373644	NM_030625.2	1280	aAa/aCa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70450907	70450907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	70	371	0	ENST00000373644.4:c.5747C>A	p.Pro1916His	p.P1916H	ENST00000373644	NM_030625.2	1916	cCt/cAt																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114901057	114901057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	308	727	1	ENST00000543371.1:c.667G>A	p.Asp223Asn	p.D223N	ENST00000543371	NM_001198531.1	223	Gac/Aac																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123274691	123274691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	250	494	1	ENST00000358487.5:c.1227C>A	p.Phe409Leu	p.F409L	ENST00000358487	NM_000141.4	409	ttC/ttA																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2156731	2156731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	46	535	0	ENST00000434045.2:c.191C>T	p.Ser64Leu	p.S64L	ENST00000434045	NM_001127598.1	64	tCg/tTg																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2161506	2161506	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	173	412	0	ENST00000434045.2:c.21A>C	p.Gln7His	p.Q7H	ENST00000434045	NM_001127598.1	7	caA/caC																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64138828	64138828	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	137	336	0	ENST00000334205.4:c.2195A>C	p.Lys732Thr	p.K732T	ENST00000334205	NM_003942.2	732	aAg/aCg																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64573823	64573823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	135	408	0	ENST00000337652.1:c.945G>T	p.Lys315Asn	p.K315N	ENST00000337652	NM_130803.2	315	aaG/aaT																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77048448	77048448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	110	544	2	ENST00000356341.3:c.1137C>A	p.Phe379Leu	p.F379L	ENST00000356341	NM_002576.4	379	ttC/ttA																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77091008	77091008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	234	519	1	ENST00000356341.3:c.222G>T	p.Glu74Asp	p.E74D	ENST00000356341	NM_002576.4	74	gaG/gaT																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94203791	94203791	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190142346		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	31	438	0	ENST00000323929.3:c.863G>A	p.Arg288His	p.R288H	ENST00000323929	NM_005591.3	288	cGt/cAt																																												NEWRECORD																																		
YAP1	0	MSKCC	GRCh37	11	102100619	102100619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	127	463	0	ENST00000282441.5:c.1463C>A	p.Ser488Tyr	p.S488Y	ENST00000282441	NM_001130145.2	488	tCt/tAt																																												NEWRECORD																																		
YAP1	0	MSKCC	GRCh37	11	102100657	102100657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	55	339	0	ENST00000282441.5:c.1501C>A	p.Leu501Ile	p.L501I	ENST00000282441	NM_001130145.2	501	Ctt/Att																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102195344	102195344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	348	829	1	ENST00000263464.3:c.104C>T	p.Thr35Met	p.T35M	ENST00000263464	NM_001165.4	35	aCg/aTg																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102206945	102206945	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	257	608	0	ENST00000263464.3:c.1573T>G	p.Leu525Val	p.L525V	ENST00000263464	NM_001165.4	525	Tta/Gta																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108155090	108155090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	172	481	0	ENST00000278616.4:c.3883C>T	p.Leu1295Phe	p.L1295F	ENST00000278616	NM_000051.3	1295	Ctt/Ttt																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108158328	108158328	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	144	418	0	ENST00000278616.4:c.3995T>G	p.Ile1332Ser	p.I1332S	ENST00000278616	NM_000051.3	1332	aTt/aGt																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108203492	108203492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138941496		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	150	394	0	ENST00000278616.4:c.7792C>T	p.Arg2598Ter	p.R2598*	ENST00000278616	NM_000051.3	2598	Cga/Tga																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118339501	118339501	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	63	445	0	ENST00000534358.1:c.444C>A	p.Phe148Leu	p.F148L	ENST00000534358	NM_005933.3	148	ttC/ttA																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118375758	118375758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	114	591	1	ENST00000534358.1:c.9151C>T	p.Pro3051Ser	p.P3051S	ENST00000534358	NM_005933.3	3051	Ccc/Tcc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118376605	118376605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	222	499	0	ENST00000534358.1:c.9998C>A	p.Ser3333Tyr	p.S3333Y	ENST00000534358	NM_005933.3	3333	tCt/tAt																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119148534	119148534	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	226	601	1	ENST00000264033.4:c.1075G>T	p.Asp359Tyr	p.D359Y	ENST00000264033	NM_005188.3	359	Gac/Tac																																												NEWRECORD																																		
CHEK1	0	MSKCC	GRCh37	11	125503175	125503175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	112	557	0	ENST00000428830.2:c.542G>T	p.Arg181Ile	p.R181I	ENST00000428830	NM_001114121.2	181	aGa/aTa																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	402109	402109	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	291	740	0	ENST00000399788.2:c.4682G>T	p.Arg1561Ile	p.R1561I	ENST00000399788	NM_001042603.1	1561	aGa/aTa																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	472145	472145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	220	531	0	ENST00000399788.2:c.656G>A	p.Arg219Lys	p.R219K	ENST00000399788	NM_001042603.1	219	aGa/aAa																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1034621	1034621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	110	662	2	ENST00000358495.3:c.538C>T	p.Arg180Cys	p.R180C	ENST00000358495	NM_134424.2	180	Cgc/Tgc																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18466993	18466993	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	36	539	0	ENST00000266497.5:c.1132C>T	p.Arg378Ter	p.R378*	ENST00000266497		378	Cga/Tga																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18793439	18793439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	140	602	0	ENST00000266497.5:c.4136G>T	p.Arg1379Met	p.R1379M	ENST00000266497		1379	aGg/aTg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380289	25380289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	155	533	0	ENST00000256078.4:c.169G>A	p.Asp57Asn	p.D57N	ENST00000256078	NM_033360.2	57	Gac/Aac																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245811	46245811	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	240	629	0	ENST00000334344.6:c.3905C>A	p.Ser1302Ter	p.S1302*	ENST00000334344	NM_152641.2	1302	tCa/tAa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49416133	49416133	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	194	353	1	ENST00000301067.7:c.16342C>T	p.Arg5448Ter	p.R5448*	ENST00000301067	NM_003482.3	5448	Cga/Tga																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49416466	49416466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	48	520	0	ENST00000301067.7:c.16245G>T	p.Lys5415Asn	p.K5415N	ENST00000301067	NM_003482.3	5415	aaG/aaT																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49422861	49422861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	104	484	0	ENST00000301067.7:c.14234C>A	p.Pro4745His	p.P4745H	ENST00000301067	NM_003482.3	4745	cCt/cAt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49427702	49427702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	211	521	2	ENST00000301067.7:c.10786C>T	p.Arg3596Trp	p.R3596W	ENST00000301067	NM_003482.3	3596	Cgg/Tgg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431493	49431493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	220	508	2	ENST00000301067.7:c.9646G>A	p.Glu3216Lys	p.E3216K	ENST00000301067	NM_003482.3	3216	Gag/Aag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49443500	49443500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	182	389	5	ENST00000301067.7:c.3871C>T	p.Arg1291Trp	p.R1291W	ENST00000301067	NM_003482.3	1291	Cgg/Tgg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49445755	49445755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1347	270	965	0	ENST00000301067.7:c.1711C>T	p.Arg571Cys	p.R571C	ENST00000301067	NM_003482.3	571	Cgc/Tgc																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57859706	57859706	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	240	618	0	ENST00000228682.2:c.760C>T	p.His254Tyr	p.H254Y	ENST00000228682	NM_005269.2	254	Cac/Tac																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57861246	57861246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	247	628	0	ENST00000228682.2:c.1043G>A	p.Arg348Gln	p.R348Q	ENST00000228682	NM_005269.2	348	cGa/cAa																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112888313	112888313	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	96	422	0	ENST00000351677.2:c.329A>G	p.Glu110Gly	p.E110G	ENST00000351677	NM_002834.3	110	gAa/gGa																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120675	115120675	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	218	594	1	ENST00000257566.3:c.331G>T	p.Glu111Ter	p.E111*	ENST00000257566	NM_016569.3	111	Gaa/Taa																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133249847	133249847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	184	479	1	ENST00000320574.5:c.1376C>T	p.Ser459Phe	p.S459F	ENST00000320574	NM_006231.2	459	tCt/tTt																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133263897	133263897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	71	207	0	ENST00000320574.5:c.5C>A	p.Ser2Tyr	p.S2Y	ENST00000320574	NM_006231.2	2	tCt/tAt																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28597488	28597488	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	83	456	0	ENST00000241453.7:c.2417C>T	p.Ser806Leu	p.S806L	ENST00000241453	NM_004119.2	806	tCg/tTg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28919631	28919631	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200840674		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	191	618	0	ENST00000282397.4:c.2306C>T	p.Ala769Val	p.A769V	ENST00000282397	NM_002019.4	769	gCg/gTg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28931772	28931772	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	242	607	1	ENST00000282397.4:c.2167G>T	p.Glu723Ter	p.E723*	ENST00000282397	NM_002019.4	723	Gaa/Taa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29008201	29008201	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	66	531	0	ENST00000282397.4:c.670C>T	p.Arg224Ter	p.R224*	ENST00000282397	NM_002019.4	224	Cga/Tga																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32910849	32910849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	70	833	0	ENST00000380152.3:c.2357C>A	p.Ser786Tyr	p.S786Y	ENST00000380152		786	tCt/tAt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32912067	32912067	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	285	867	0	ENST00000380152.3:c.3575T>G	p.Phe1192Cys	p.F1192C	ENST00000380152		1192	tTt/tGt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913692	32913692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	345	868	1	ENST00000380152.3:c.5200G>A	p.Glu1734Lys	p.E1734K	ENST00000380152		1734	Gaa/Aaa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32931937	32931937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	265	585	0	ENST00000380152.3:c.7676C>A	p.Ser2559Tyr	p.S2559Y	ENST00000380152		2559	tCt/tAt																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134594	41134594	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	175	791	2	ENST00000379561.5:c.1034C>A	p.Ser345Tyr	p.S345Y	ENST00000379561	NM_002015.3	345	tCt/tAt																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134687	41134687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	255	703	0	ENST00000379561.5:c.941G>A	p.Arg314His	p.R314H	ENST00000379561	NM_002015.3	314	cGc/cAc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48916801	48916801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	83	481	1	ENST00000267163.4:c.331G>T	p.Asp111Tyr	p.D111Y	ENST00000267163	NM_000321.2	111	Gat/Tat																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73337719	73337719	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	119	502	0	ENST00000377767.4:c.1997T>G	p.Phe666Cys	p.F666C	ENST00000377767	NM_014953.3	666	tTt/tGt																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73347874	73347874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	85	561	0	ENST00000377767.4:c.1187G>A	p.Arg396Gln	p.R396Q	ENST00000377767	NM_014953.3	396	cGg/cAg																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110434953	110434953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	207	482	0	ENST00000375856.3:c.3448G>A	p.Glu1150Lys	p.E1150K	ENST00000375856	NM_003749.2	1150	Gag/Aag																																												NEWRECORD																																		
NFKBIA	0	MSKCC	GRCh37	14	35871728	35871728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	291	696	1	ENST00000216797.5:c.778C>T	p.Arg260Cys	p.R260C	ENST00000216797	NM_020529.2	260	Cgc/Tgc																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060812	38060812	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1329	140	836	0	ENST00000250448.2:c.1177C>A	p.His393Asn	p.H393N	ENST00000250448	NM_004496.3	393	Cac/Aac																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81609352	81609352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	216	606	0	ENST00000298171.2:c.950C>T	p.Ala317Val	p.A317V	ENST00000298171	NM_000369.2	317	gCc/gTc																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95560252	95560252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	68	379	0	ENST00000343455.3:c.5337G>T	p.Lys1779Asn	p.K1779N	ENST00000343455	NM_177438.2	1779	aaG/aaT																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95569775	95569775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	169	542	0	ENST00000343455.3:c.3958G>A	p.Asp1320Asn	p.D1320N	ENST00000343455	NM_177438.2	1320	Gac/Aac																																												NEWRECORD																																		
GREM1	0	MSKCC	GRCh37	15	33023435	33023435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1196	229	855	2	ENST00000300177.4:c.544G>A	p.Asp182Asn	p.D182N	ENST00000300177	NM_001191322.1	182	Gat/Aat																																												NEWRECORD																																		
RAD51	0	MSKCC	GRCh37	15	41021734	41021734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	197	498	2	ENST00000267868.3:c.676G>A	p.Ala226Thr	p.A226T	ENST00000267868	NM_002875.4	226	Gcc/Acc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42003283	42003283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	126	885	1	ENST00000219905.7:c.2820G>T	p.Lys940Asn	p.K940N	ENST00000219905	NM_001164273.1	940	aaG/aaT																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42040903	42040903	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	294	687	2	ENST00000219905.7:c.5281C>T	p.Arg1761Ter	p.R1761*	ENST00000219905	NM_001164273.1	1761	Cga/Tga																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42059447	42059447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	253	736	0	ENST00000219905.7:c.9167C>T	p.Ser3056Leu	p.S3056L	ENST00000219905	NM_001164273.1	3056	tCg/tTg																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457701	67457701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	205	460	0	ENST00000327367.4:c.511G>A	p.Glu171Lys	p.E171K	ENST00000327367	NM_005902.3	171	Gag/Aag																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88690584	88690584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	68	434	1	ENST00000360948.2:c.446C>T	p.Thr149Met	p.T149M	ENST00000360948	NM_001012338.2	149	aCg/aTg																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91292623	91292623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	163	371	0	ENST00000355112.3:c.125C>A	p.Ser42Tyr	p.S42Y	ENST00000355112	NM_000057.2	42	tCt/tAt																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91292818	91292818	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	223	631	0	ENST00000355112.3:c.320T>C	p.Leu107Ser	p.L107S	ENST00000355112	NM_000057.2	107	tTa/tCa																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91298102	91298102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	261	542	1	ENST00000355112.3:c.1021C>A	p.Leu341Ile	p.L341I	ENST00000355112	NM_000057.2	341	Ctt/Att																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2108831	2108831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	248	544	0	ENST00000219476.3:c.932C>A	p.Ser311Tyr	p.S311Y	ENST00000219476	NM_000548.3	311	tCt/tAt																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2126586	2126586	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	182	429	0	ENST00000219476.3:c.2837G>T	p.Ser946Ile	p.S946I	ENST00000219476	NM_000548.3	946	aGt/aTt																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3781375	3781375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	174	491	1	ENST00000262367.5:c.4990C>T	p.Arg1664Cys	p.R1664C	ENST00000262367	NM_004380.2	1664	Cgc/Tgc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3789666	3789666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	165	633	0	ENST00000262367.5:c.4193C>T	p.Ala1398Val	p.A1398V	ENST00000262367	NM_004380.2	1398	gCt/gTt																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3808917	3808917	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	98	521	1	ENST00000262367.5:c.3307C>T	p.Arg1103Ter	p.R1103*	ENST00000262367	NM_004380.2	1103	Cga/Tga																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3820617	3820617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	104	437	0	ENST00000262367.5:c.2834C>T	p.Ser945Leu	p.S945L	ENST00000262367	NM_004380.2	945	tCg/tTg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3842041	3842041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	243	584	1	ENST00000262367.5:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000262367	NM_004380.2	424	cGa/cAa																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857818	9857818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	82	639	0	ENST00000330684.3:c.3583G>T	p.Asp1195Tyr	p.D1195Y	ENST00000330684	NM_001134407.1	1195	Gac/Tac																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9984909	9984909	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	111	658	0	ENST00000330684.3:c.1056G>T	p.Glu352Asp	p.E352D	ENST00000330684	NM_001134407.1	352	gaG/gaT																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14029408	14029408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	166	576	0	ENST00000311895.7:c.1619C>T	p.Ser540Leu	p.S540L	ENST00000311895	NM_005236.2	540	tCg/tTg																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23646795	23646795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	282	754	0	ENST00000261584.4:c.1072C>T	p.Pro358Ser	p.P358S	ENST00000261584	NM_024675.3	358	Ccc/Tcc																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23649216	23649216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	224	568	1	ENST00000261584.4:c.166G>T	p.Asp56Tyr	p.D56Y	ENST00000261584	NM_024675.3	56	Gat/Tat																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830136	72830136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	257	743	0	ENST00000268489.5:c.6445C>T	p.Arg2149Cys	p.R2149C	ENST00000268489	NM_006885.3	2149	Cgc/Tgc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993828	72993828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	41	597	1	ENST00000268489.5:c.217G>A	p.Glu73Lys	p.E73K	ENST00000268489	NM_006885.3	73	Gag/Aag																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89347338	89347338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	174	805	1	ENST00000301030.4:c.5612C>T	p.Ala1871Val	p.A1871V	ENST00000301030	NM_001256183.1	1871	gCc/gTc																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89838216	89838216	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs17232973		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	260	437	0	ENST00000389301.3:c.2021C>T	p.Ser674Leu	p.S674L	ENST00000389301	NM_000135.2	674	tCg/tTg																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89845228	89845228	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	234	657	0	ENST00000389301.3:c.1807T>A	p.Phe603Ile	p.F603I	ENST00000389301	NM_000135.2	603	Ttt/Att																																												NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8109897	8109897	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	223	469	0	ENST00000585124.1:c.598G>T	p.Asp200Tyr	p.D200Y	ENST00000585124	NM_004217.3	200	Gac/Tac																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11998926	11998926	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	45	551	0	ENST00000353533.5:c.428A>C	p.Lys143Thr	p.K143T	ENST00000353533	NM_003010.3	143	aAa/aCa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15978955	15978955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	232	592	2	ENST00000268712.3:c.3563C>T	p.Ser1188Leu	p.S1188L	ENST00000268712	NM_006311.3	1188	tCg/tTg																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16049815	16049815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	143	598	1	ENST00000268712.3:c.957G>T	p.Glu319Asp	p.E319D	ENST00000268712	NM_006311.3	319	gaG/gaT																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17131220	17131220	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	256	562	0	ENST00000285071.4:c.232A>T	p.Lys78Ter	p.K78*	ENST00000285071	NM_144997.5	78	Aag/Tag																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29546065	29546065	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	194	546	0	ENST00000358273.4:c.1570G>T	p.Glu524Ter	p.E524*	ENST00000358273	NM_001042492.2	524	Gaa/Taa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29585374	29585374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	34	508	0	ENST00000358273.4:c.4186C>T	p.Arg1396Cys	p.R1396C	ENST00000358273	NM_001042492.2	1396	Cgt/Tgt																																												NEWRECORD																																		
RAD51D	0	MSKCC	GRCh37	17	33430306	33430306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	119	606	0	ENST00000335858.7:c.369G>T	p.Lys123Asn	p.K123N	ENST00000335858	NM_133629.2	123	aaG/aaT																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37873608	37873608	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	213	573	0	ENST00000269571.5:c.1773G>T	p.Lys591Asn	p.K591N	ENST00000269571		591	aaG/aaT																																												NEWRECORD																																		
STAT5B	0	MSKCC	GRCh37	17	40362238	40362238	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	107	753	0	ENST00000293328.3:c.1857C>A	p.Phe619Leu	p.F619L	ENST00000293328	NM_012448.3	619	ttC/ttA																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41243673	41243673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	109	657	3	ENST00000357654.3:c.3875C>A	p.Ser1292Tyr	p.S1292Y	ENST00000357654	NM_007294.3	1292	tCt/tAt																																												NEWRECORD																																		
RAD51C	0	MSKCC	GRCh37	17	56780625	56780625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140804406		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	222	538	1	ENST00000337432.4:c.640C>T	p.Arg214Cys	p.R214C	ENST00000337432	NM_058216.2	214	Cgt/Tgt																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59858253	59858253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	110	639	2	ENST00000259008.2:c.1742G>A	p.Arg581Gln	p.R581Q	ENST00000259008	NM_032043.2	581	cGa/cAa																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	745986	745986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	95	467	0	ENST00000314574.4:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000314574	NM_005433.3	179	cGa/cAa																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1625652	1625652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	242	543	0	ENST00000344749.5:c.422C>T	p.Ser141Leu	p.S141L	ENST00000344749	NM_001136139.2	141	tCg/tTg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7184419	7184419	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	246	529	0	ENST00000302850.5:c.882G>T	p.Lys294Asn	p.K294N	ENST00000302850	NM_000208.2	294	aaG/aaT																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10260146	10260146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	109	576	1	ENST00000340748.4:c.2521G>A	p.Glu841Lys	p.E841K	ENST00000340748		841	Gaa/Aaa																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10273405	10273405	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200601847		P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	187	527	0	ENST00000340748.4:c.898G>A	p.Glu300Lys	p.E300K	ENST00000340748		300	Gaa/Aaa																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10597416	10597416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	276	593	0	ENST00000171111.5:c.1787G>A	p.Arg596Gln	p.R596Q	ENST00000171111	NM_203500.1	596	cGa/cAa																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15278077	15278077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	211	590	0	ENST00000263388.2:c.5345T>C	p.Val1782Ala	p.V1782A	ENST00000263388	NM_000435.2	1782	gTc/gCc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15299124	15299124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	223	514	0	ENST00000263388.2:c.1414G>A	p.Glu472Lys	p.E472K	ENST00000263388	NM_000435.2	472	Gag/Aag																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15299856	15299856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	69	536	1	ENST00000263388.2:c.1322G>A	p.Arg441Gln	p.R441Q	ENST00000263388	NM_000435.2	441	cGa/cAa																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15299883	15299883	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	192	553	0	ENST00000263388.2:c.1295T>C	p.Val432Ala	p.V432A	ENST00000263388	NM_000435.2	432	gTc/gCc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15302858	15302858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	72	465	0	ENST00000263388.2:c.592G>A	p.Ala198Thr	p.A198T	ENST00000263388	NM_000435.2	198	Gcg/Acg																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15349220	15349220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	163	535	0	ENST00000263377.2:c.4057C>A	p.Leu1353Ile	p.L1353I	ENST00000263377	NM_058243.2	1353	Cta/Ata																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17948791	17948791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	225	558	0	ENST00000458235.1:c.1651A>G	p.Thr551Ala	p.T551A	ENST00000458235	NM_000215.3	551	Aca/Gca																																												NEWRECORD																																		
CEBPA	0	MSKCC	GRCh37	19	33792485	33792485	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	34	360	0	ENST00000498907.2:c.836A>G	p.Asp279Gly	p.D279G	ENST00000498907	NM_004364.3	279	gAc/gGc																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41765576	41765576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	205	588	0	ENST00000301178.4:c.2452G>A	p.Glu818Lys	p.E818K	ENST00000301178	NM_021913.4	818	Gaa/Aaa																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42794949	42794949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	129	319	0	ENST00000575354.2:c.2029C>T	p.Arg677Trp	p.R677W	ENST00000575354	NM_015125.3	677	Cgg/Tgg																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45855871	45855871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	213	496	1	ENST00000391945.4:c.1939C>T	p.Arg647Cys	p.R647C	ENST00000391945	NM_000400.3	647	Cgt/Tgt																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52714742	52714742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	136	301	0	ENST00000322088.6:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000322088	NM_014225.5	167	cGa/cAa																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546575	9546575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	75	554	0	ENST00000353224.5:c.1447C>T	p.Arg483Trp	p.R483W	ENST00000353224	NM_177990.2	483	Cgg/Tgg																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546678	9546678	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	82	499	0	ENST00000353224.5:c.1344C>A	p.Tyr448Ter	p.Y448*	ENST00000353224	NM_177990.2	448	taC/taA																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31019156	31019156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	287	620	0	ENST00000375687.4:c.751G>T	p.Asp251Tyr	p.D251Y	ENST00000375687	NM_015338.5	251	Gat/Tat																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31379488	31379488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	75	556	0	ENST00000328111.2:c.895C>T	p.Arg299Ter	p.R299*	ENST00000328111	NM_006892.3	299	Cga/Tga																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31387102	31387102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	189	486	0	ENST00000328111.2:c.1727G>A	p.Arg576Gln	p.R576Q	ENST00000328111	NM_006892.3	576	cGa/cAa																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39706272	39706272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	135	406	0	ENST00000361337.2:c.330C>A	p.Phe110Leu	p.F110L	ENST00000361337	NM_003286.2	110	ttC/ttA																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41400170	41400170	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	280	468	0	ENST00000373198.4:c.589C>T	p.Arg197Ter	p.R197*	ENST00000373198	NM_133170.3	197	Cga/Tga																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164712	36164712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	44	543	0	ENST00000300305.3:c.1163C>T	p.Ser388Leu	p.S388L	ENST00000300305		388	tCg/tTg																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42879912	42879912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	56	146	1	ENST00000398585.3:c.20G>A	p.Gly7Glu	p.G7E	ENST00000398585	NM_001135099.1	7	gGa/gAa																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24129431	24129431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	124	331	0	ENST00000263121.7:c.75C>A	p.Phe25Leu	p.F25L	ENST00000263121	NM_003073.3	25	ttC/ttA																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41537106	41537106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	231	506	0	ENST00000263253.7:c.1933G>A	p.Glu645Lys	p.E645K	ENST00000263253	NM_001429.3	645	Gaa/Aaa																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41568574	41568574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	273	654	0	ENST00000263253.7:c.4524C>A	p.Phe1508Leu	p.F1508L	ENST00000263253	NM_001429.3	1508	ttC/ttA																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41572405	41572405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	158	641	0	ENST00000263253.7:c.4934G>A	p.Arg1645Gln	p.R1645Q	ENST00000263253	NM_001429.3	1645	cGa/cAa																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39932677	39932677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	542	919	0	ENST00000378444.4:c.1922C>A	p.Ser641Tyr	p.S641Y	ENST00000378444	NM_001123385.1	641	tCt/tAt																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39933587	39933587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	252	614	1	ENST00000378444.4:c.1012C>T	p.Arg338Trp	p.R338W	ENST00000378444	NM_001123385.1	338	Cgg/Tgg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44941837	44941837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1253	108	690	1	ENST00000377967.4:c.3161G>T	p.Arg1054Ile	p.R1054I	ENST00000377967	NM_021140.2	1054	aGa/aTa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44969370	44969370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	224	740	3	ENST00000377967.4:c.4052G>A	p.Arg1351Gln	p.R1351Q	ENST00000377967	NM_021140.2	1351	cGa/cAa																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47006767	47006767	+	5_prime_UTR_variant	5'UTR	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	294	594	0	ENST00000329236.7:c.-114G>A		p.*38*	ENST00000329236	NM_001204466.1																																														NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47034435	47034435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	380	598	2	ENST00000329236.7:c.289G>A	p.Ala97Thr	p.A97T	ENST00000329236	NM_001204466.1	97	Gcc/Acc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47041361	47041361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	367	551	0	ENST00000329236.7:c.1471G>A	p.Val491Ile	p.V491I	ENST00000329236	NM_001204466.1	491	Gtc/Atc																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47422655	47422655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	367	695	1	ENST00000377045.4:c.127G>A	p.Asp43Asn	p.D43N	ENST00000377045	NM_001654.4	43	Gac/Aac																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47422716	47422716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	295	541	0	ENST00000377045.4:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000377045	NM_001654.4	63	cGa/cAa																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410948	63410948	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	295	650	2	ENST00000330258.3:c.2219C>A	p.Ser740Tyr	p.S740Y	ENST00000330258	NM_152424.3	740	tCt/tAt																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412029	63412029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1343	225	1073	2	ENST00000330258.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000330258	NM_152424.3	380	Gag/Aag																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765686	66765686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	316	690	2	ENST00000374690.3:c.698C>T	p.Ser233Phe	p.S233F	ENST00000374690	NM_000044.3	233	tCt/tTt																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766604	66766604	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	265	508	1	ENST00000374690.3:c.1616G>A	p.Arg539His	p.R539H	ENST00000374690	NM_000044.3	539	cGt/cAt																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70346198	70346198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1380	81	758	0	ENST00000374080.3:c.2549G>A	p.Arg850Gln	p.R850Q	ENST00000374080		850	cGg/cAg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70347294	70347294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	72	539	2	ENST00000374080.3:c.2958G>T	p.Lys986Asn	p.K986N	ENST00000374080		986	aaG/aaT																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76814272	76814272	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	256	723	0	ENST00000373344.5:c.6372T>G	p.Ile2124Met	p.I2124M	ENST00000373344	NM_000489.3	2124	atT/atG																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76907681	76907681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1481	444	966	1	ENST00000373344.5:c.4480C>A	p.Gln1494Lys	p.Q1494K	ENST00000373344	NM_000489.3	1494	Caa/Aaa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937492	76937492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	275	613	0	ENST00000373344.5:c.3256G>A	p.Ala1086Thr	p.A1086T	ENST00000373344	NM_000489.3	1086	Gca/Aca																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100615122	100615122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	110	574	2	ENST00000308731.7:c.793C>T	p.Pro265Ser	p.P265S	ENST00000308731	NM_000061.2	265	Cct/Tct																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123191760	123191760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1390	117	829	1	ENST00000218089.9:c.1349G>A	p.Arg450Lys	p.R450K	ENST00000218089	NM_001042749.1	450	aGa/aAa																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38964913	38964913	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	127	360	0	ENST00000357387.3:c.1381A>C	p.Ile461Leu	p.I461L	ENST00000357387	NM_152756.3	461	Atc/Ctc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842656	68842657	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0012130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	257	716	0	ENST00000261769.5:c.597_598dup	p.Pro200HisfsTer16	p.P200Hfs*16	ENST00000261769	NM_004360.3	198	gac/gACac																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	85	169	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	268	375	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26031925	26031925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	392	728	0	ENST00000244661.2:c.364C>T	p.Pro122Ser	p.P122S	ENST00000244661	NM_003537.3	122	Ccc/Tcc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	142	445	0	ENST00000301067.7:c.15536G>C	p.Arg5179Pro	p.R5179P	ENST00000301067	NM_003482.3	5179	cGt/cCt																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68863561	68863562	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	519	423	0	ENST00000261769.5:c.2300_2301insC	p.Asp768Ter	p.D768*	ENST00000261769	NM_004360.3	767	ttt/ttCt																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123185227	123185230	+	frameshift_variant	Frame_Shift_Del	DEL	ACTC	ACTC	-			P-0010809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	95	473	0	ENST00000218089.9:c.1183_1186del	p.Thr395LeufsTer29	p.T395Lfs*29	ENST00000218089	NM_001042749.1	393	ttACTC/tt																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001952-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			301	365	235	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001952-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			213	198	197	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419950	152419950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001952-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			440	302	273	0	ENST00000206249.3:c.1637C>A	p.Ala546Asp	p.A546D	ENST00000206249	NM_000125.3	546	gCc/gAc																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67645922	67645922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001952-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			213	368	326	0	ENST00000264010.4:c.850C>T	p.His284Tyr	p.H284Y	ENST00000264010	NM_006565.3	284	Cac/Tac																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56155725	56155726	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0001952-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			487	271	262	0	ENST00000399503.3:c.819_820delAG	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	273	AGa/a																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419914	152419914	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001952-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			579	151	238	0	ENST00000206249.3:c.1601T>A	p.Val534Glu	p.V534E	ENST00000206249	NM_000125.3	534	gTg/gAg																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39913284	39913285	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATCATCTG			P-0001952-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			387	147	364	0	ENST00000378444.4:c.4823_4830dupCAGATGAT	p.Glu1611GlnfsTer10	p.E1611Qfs*10	ENST00000378444	NM_001123385.1	1610	-/CAGATGAT																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160539	56160568	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATAAAAAAAAATGTTGTGAAGTTTCAGAG	AATAAAAAAAAATGTTGTGAAGTTTCAGAG	TTTT			P-0001952-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			421	216	212	0	ENST00000399503.3:c.835-22_842delinsTTTT		p.X279_splice	ENST00000399503	NM_005921.1	279																																													NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133235926	133235926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	113	389	1	ENST00000320574.5:c.3230G>A	p.Arg1077His	p.R1077H	ENST00000320574	NM_006231.2	1077	cGc/cAc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89335023	89335023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	42	190	0	ENST00000301030.4:c.7855G>A	p.Val2619Met	p.V2619M	ENST00000301030	NM_001256183.1	2619	Gtg/Atg																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12032514	12032514	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	17	317	0	ENST00000353533.5:c.950T>G	p.Leu317Arg	p.L317R	ENST00000353533	NM_003010.3	317	cTa/cGa																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57485403	57485403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	129	392	0	ENST00000371085.3:c.985G>A	p.Gly329Arg	p.G329R	ENST00000371085	NM_000516.4	329	Gga/Aga																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89653781	89653782	+	stop_gained,frameshift_variant,splice_region_variant	Nonsense_Mutation	INS	-	-	A			P-0010075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	24	410	0	ENST00000371953.3:c.80dup	p.Tyr27Ter	p.Y27*	ENST00000371953	NM_000314.4	27	tat/tAat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	159	646	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	115	582	0	ENST00000347630.2:c.398T>G	p.Phe133Cys	p.F133C	ENST00000347630	NM_001007230.1	133	tTc/tGc																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198257081	198257081	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	54	551	0	ENST00000335508.6:c.3861C>G	p.Ile1287Met	p.I1287M	ENST00000335508	NM_012433.2	1287	atC/atG																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31021546	31021560	+	inframe_deletion	In_Frame_Del	DEL	GGATCAGGAACCCAA	GGATCAGGAACCCAA	-			P-0010078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	112	390	1	ENST00000375687.4:c.1552_1566del	p.Glu518_Gln522del	p.E518_Q522del	ENST00000375687	NM_015338.5	515	gtGGATCAGGAACCCAAg/gtg																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204515962	204515963	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	94	607	0	ENST00000367182.3:c.861dup	p.Lys288Ter	p.K288*	ENST00000367182	NM_001278516.1	287	tct/tcTt																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061516	38061517	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGC			P-0009819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	41	238	0	ENST00000250448.2:c.470_472dup	p.Gly157dup	p.G157dup	ENST00000250448	NM_004496.3	157	gac/gGCGac																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	71873229	71873229	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	29	798	0	ENST00000357731.5:c.965T>G	p.Ile322Ser	p.I322S	ENST00000357731	NM_173808.2	322	aTt/aGt																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061229	38061230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CT			P-0008356-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	56	439	0	ENST00000250448.2:c.759_760insAG	p.Phe254SerfsTer68	p.F254Sfs*68	ENST00000250448	NM_004496.3	253	-/AG																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	206	342	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68857311	68857312	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	161	306	0	ENST00000261769.5:c.1947dup	p.Ile650TyrfsTer13	p.I650Yfs*13	ENST00000261769	NM_004360.3	649	tct/tcTt																																												NEWRECORD																																		
RUNX1	861	MSKCC	GRCh37	21	36206722	36206722	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	198	621	0	ENST00000300305.3:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000300305		264	Cag/Tag																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061238	38061239	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGAGTCCGGGTGCAGCGTCCAGTA			P-0014829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	162	634	0	ENST00000250448.2:c.727_750dup	p.Tyr243_Ser250dup	p.Y243_S250dup	ENST00000250448	NM_004496.3	243	-/TACTGGACGCTGCACCCGGACTCC																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115117425	115117450	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGGTATTTGTGCATGGAGTTCAA	GGCTGGTATTTGTGCATGGAGTTCAA	C			P-0014829-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	123	349	0	ENST00000257566.3:c.724_749delinsG	p.Leu242AlafsTer6	p.L242Afs*6	ENST00000257566	NM_016569.3	242	TTGAACTCCATGCACAAATACCAGCCc/Gc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs68130327		P-0010573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	148	277	1	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2112602	2112602	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	24	384	0	ENST00000219476.3:c.1361+1G>A		p.X454_splice	ENST00000219476	NM_000548.3	454																																													NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50902283	50902283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	157	884	3	ENST00000440232.2:c.175C>A	p.Gln59Lys	p.Q59K	ENST00000440232	NM_002691.3	59	Cag/Aag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023849	27023874	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCCCAGGACGGGGGCGCCGGCAA	GGGCCCCAGGACGGGGGCGCCGGCAA	-			P-0010573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	244	267	0	ENST00000324856.7:c.961_986delCAGGACGGGGGCGCCGGCAAGGGCCC	p.Gln321GlyfsTer70	p.Q321Gfs*70	ENST00000324856	NM_006015.4	319	GGGCCCCAGGACGGGGGCGCCGGCAAg/g																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48584513	48584514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0010573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	20	279	0	ENST00000342988.3:c.686_687insTG	p.Ser232AlafsTer10	p.S232Afs*10	ENST00000342988	NM_005359.5	229	ctg/ctTGg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	63	273	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128051218	128051218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	239	386	0	ENST00000285398.2:c.105G>T	p.Gln35His	p.Q35H	ENST00000285398	NM_000122.1	35	caG/caT																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89498506	89498506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	208	294	2	ENST00000336596.2:c.2478G>T	p.Trp826Cys	p.W826C	ENST00000336596	NM_005233.5	826	tgG/tgT																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66201792	66201792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	64	291	0	ENST00000273854.3:c.2710C>T	p.Pro904Ser	p.P904S	ENST00000273854	NM_004439.5	904	Cct/Tct																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35874565	35874565	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	476	409	0	ENST00000303115.3:c.721A>T	p.Ile241Phe	p.I241F	ENST00000303115	NM_002185.3	241	Atc/Ttc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30672882	30672882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	128	550	0	ENST00000376406.3:c.4078G>A	p.Val1360Met	p.V1360M	ENST00000376406	NM_014641.2	1360	Gtg/Atg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8460511	8460511	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	172	328	0	ENST00000356435.5:c.3775C>G	p.Pro1259Ala	p.P1259A	ENST00000356435		1259	Cca/Gca																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	54	96	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	54	96	0	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412378	139412378	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	68	127	0	ENST00000277541.6:c.1267T>G	p.Cys423Gly	p.C423G	ENST00000277541	NM_017617.3	423	Tgc/Ggc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100349	8100349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	92	379	0	ENST00000346208.3:c.323C>T	p.Thr108Ile	p.T108I	ENST00000346208		108	aCc/aTc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15975518	15975518	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	142	338	0	ENST00000268712.3:c.3836G>T	p.Arg1279Met	p.R1279M	ENST00000268712	NM_006311.3	1279	aGg/aTg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29667602	29667602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	225	333	0	ENST00000358273.4:c.7001G>A	p.Gly2334Asp	p.G2334D	ENST00000358273	NM_001042492.2	2334	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578192	7578193	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GGCACCACCACACTATGTCGAAAAGTGT			P-0007842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	138	410	1	ENST00000269305.4:c.629_656dup	p.Tyr220HisfsTer5	p.Y220Hfs*5	ENST00000269305	NM_001126112.2	219	ccc/ccACACTTTTCGACATAGTGTGGTGGTGCCc																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33287185	33287185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	378	368	0	ENST00000374542.5:c.1912C>T	p.Gln638Ter	p.Q638*	ENST00000374542	NM_001141970.1	638	Caa/Taa																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215593503	215593503	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	129	510	0	ENST00000260947.4:c.2231A>G	p.Asn744Ser	p.N744S	ENST00000260947	NM_000465.2	744	aAt/aGt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32929048	32929048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1605	394	956	0	ENST00000380152.3:c.7058G>T	p.Gly2353Val	p.G2353V	ENST00000380152		2353	gGt/gTt																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2098617	2098617	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0006494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	668	611	0	ENST00000219476.3:c.1A>G	p.Met1?	p.M1?	ENST00000219476	NM_000548.3	1	Atg/Gtg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106506	27106507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	425	782	0	ENST00000324856.7:c.6121dup	p.Val2041GlyfsTer58	p.V2041Gfs*58	ENST00000324856	NM_006015.4	2039	-/G																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16256075	16256075	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0011146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	206	302	1	ENST00000375759.3:c.3340A>T	p.Lys1114Ter	p.K1114*	ENST00000375759	NM_015001.2	1114	Aaa/Taa																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198274586	198274586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	459	383	0	ENST00000335508.6:c.812G>A	p.Gly271Asp	p.G271D	ENST00000335508	NM_012433.2	271	gGt/gAt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212285182	212285182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	257	302	0	ENST00000342788.4:c.3119G>A	p.Arg1040Lys	p.R1040K	ENST00000342788	NM_005235.2	1040	aGa/aAa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117715387	117715387	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	329	351	0	ENST00000368508.3:c.1102T>A	p.Leu368Ile	p.L368I	ENST00000368508	NM_002944.2	368	Tta/Ata																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49443969	49443969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	177	292	0	ENST00000301067.7:c.3402G>C	p.Gln1134His	p.Q1134H	ENST00000301067	NM_003482.3	1134	caG/caC																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89350402	89350402	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2011	706	767	0	ENST00000301030.4:c.2548T>A	p.Phe850Ile	p.F850I	ENST00000301030	NM_001256183.1	850	Ttt/Att																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	456	446	0	ENST00000269305.4:c.799C>G	p.Arg267Gly	p.R267G	ENST00000269305	NM_001126112.2	267	Cgg/Ggg																																												NEWRECORD																																		
BBC3	0	MSKCC	GRCh37	19	47725011	47725047	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCCTGCCCCCCGAGTCCCTGACGTCCACCGGGCG	GGGGCCTGCCCCCCGAGTCCCTGACGTCCACCGGGCG	-			P-0011146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	235	509	0	ENST00000449228.1:c.697_733del	p.Arg233SerfsTer45	p.R233Sfs*45	ENST00000449228	NM_001127240.2	233	CGCCCGGTGGACGTCAGGGACTCGGGGGGCAGGCCCCtc/tc																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40762935	40762936	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	187	365	0	ENST00000392038.2:c.72dup	p.Arg25ThrfsTer22	p.R25Tfs*22	ENST00000392038	NM_001626.4	24	-/A																																												NEWRECORD																																		
BBC3	0	MSKCC	GRCh37	19	47725099	47725100	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGGCAGGAGTCCCTTACCC			P-0011146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1176	151	424	0	ENST00000449228.1:c.644_645insGGGTAAGGGACTCCTGCCCT	p.Thr216GlyfsTer20	p.T216Gfs*20	ENST00000449228	NM_001127240.2	215	ctt/ctGGGTAAGGGACTCCTGCCCTt																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			926	940	484	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			811	331	717	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			752	879	512	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120510775	120510775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			986	344	686	1	ENST00000256646.2:c.1189G>T	p.Gly397Trp	p.G397W	ENST00000256646	NM_024408.3	397	Ggg/Tgg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842620	68842620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			784	356	577	0	ENST00000261769.5:c.556G>A	p.Gly186Ser	p.G186S	ENST00000261769	NM_004360.3	186	Ggc/Agc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974806	21974807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			228	96	184	0	ENST00000304494.5:c.20dup	p.Ser7ArgfsTer8	p.S7Rfs*8	ENST00000304494	NM_000077.4	7	agc/agGc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974806	21974807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004328-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			228	96	184	0	ENST00000304494.5:c.20dup	p.Ser7ArgfsTer8	p.S7Rfs*8	ENST00000304494	NM_000077.4	7	agc/agGc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	200	423	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	356	533	1	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66201813	66201813	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	167	418	0	ENST00000273854.3:c.2689C>A	p.Leu897Met	p.L897M	ENST00000273854	NM_004439.5	897	Ctg/Atg																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86627259	86627259	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	201	531	0	ENST00000274376.6:c.634A>T	p.Arg212Trp	p.R212W	ENST00000274376	NM_002890.2	212	Agg/Tgg																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508577	106508577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	128	173	0	ENST00000359195.3:c.571C>A	p.Arg191Ser	p.R191S	ENST00000359195	NM_002649.2	191	Cgc/Agc																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453124	140453124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	213	426	0	ENST00000288602.6:c.1811G>T	p.Trp604Leu	p.W604L	ENST00000288602	NM_004333.4	604	tGg/tTg																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43597994	43597994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	333	567	0	ENST00000355710.3:c.542C>A	p.Pro181His	p.P181H	ENST00000355710	NM_020975.4	181	cCc/cAc																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2156723	2156723	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	380	596	0	ENST00000434045.2:c.199G>A	p.Val67Met	p.V67M	ENST00000434045	NM_001127598.1	67	Gtg/Atg																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57860084	57860084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1205	522	791	0	ENST00000228682.2:c.824G>T	p.Cys275Phe	p.C275F	ENST00000228682	NM_005269.2	275	tGc/tTc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112635	115112635	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	163	241	0	ENST00000257566.3:c.1105T>A	p.Cys369Ser	p.C369S	ENST00000257566	NM_016569.3	369	Tgt/Agt																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857733	9857733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	315	592	0	ENST00000330684.3:c.3668C>A	p.Thr1223Asn	p.T1223N	ENST00000330684	NM_001134407.1	1223	aCc/aAc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11123701	11123701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	330	482	0	ENST00000344626.4:c.2351G>A	p.Gly784Glu	p.G784E	ENST00000344626	NM_003072.3	784	gGg/gAg																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50906317	50906317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	335	590	2	ENST00000440232.2:c.978C>A	p.Phe326Leu	p.F326L	ENST00000440232	NM_002691.3	326	ttC/ttA																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41306557	41306557	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	242	503	0	ENST00000373198.4:c.1102G>T	p.Gly368Trp	p.G368W	ENST00000373198	NM_133170.3	368	Ggg/Tgg																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39934060	39934060	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	389	340	0	ENST00000378444.4:c.539A>T	p.Asn180Ile	p.N180I	ENST00000378444	NM_001123385.1	180	aAc/aTc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47034476	47034476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	447	348	1	ENST00000329236.7:c.330G>A	p.Trp110Ter	p.W110*	ENST00000329236	NM_001204466.1	110	tgG/tgA																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	372	435	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12645652	12645652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	92	272	0	ENST00000251849.4:c.817G>T	p.Asp273Tyr	p.D273Y	ENST00000251849	NM_002880.3	273	Gac/Tac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0007014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	173	304	0	ENST00000269305.4:c.376-1G>C		p.X126_splice	ENST00000269305	NM_001126112.2	126																																													NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			858	378	283	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215657167	215657167	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	86	232	0	ENST00000260947.4:c.218A>G	p.Asn73Ser	p.N73S	ENST00000260947	NM_000465.2	73	aAt/aGt																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259311	89259311	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			901	116	449	0	ENST00000336596.2:c.455T>C	p.Phe152Ser	p.F152S	ENST00000336596	NM_005233.5	152	tTc/tCc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806176	1806176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1080	165	538	0	ENST00000260795.2:c.1195C>T	p.Arg399Cys	p.R399C	ENST00000260795		399	Cgc/Tgc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55241617	55241617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			911	437	332	0	ENST00000275493.2:c.2065G>A	p.Val689Met	p.V689M	ENST00000275493	NM_005228.3	689	Gtg/Atg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11144498	11144498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	120	370	0	ENST00000344626.4:c.3830C>T	p.Pro1277Leu	p.P1277L	ENST00000344626	NM_003072.3	1277	cCg/cTg																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66863213	66863213	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1244	224	536	0	ENST00000374690.3:c.1732G>T	p.Gly578Ter	p.G578*	ENST00000374690	NM_000044.3	578	Gga/Tga																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938397	76938397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2075	163	754	0	ENST00000373344.5:c.2351C>T	p.Ser784Phe	p.S784F	ENST00000373344	NM_000489.3	784	tCt/tTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579577	7579580	+	frameshift_variant	Frame_Shift_Ins	INS	GACG	GACG	ACGAC			P-0001303-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	166	311	0	ENST00000269305.4:c.107_110delinsGTCGT	p.Pro36ArgfsTer7	p.P36Rfs*7	ENST00000269305	NM_001126112.2	36	cCGTCc/cGTCGTc																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153249468	153249468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011603-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			303	145	473	0	ENST00000281708.4:c.1310G>T	p.Gly437Val	p.G437V	ENST00000281708	NM_033632.3	437	gGa/gTa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175213	112175213	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0011603-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			215	43	208	0	ENST00000257430.4:c.3922A>T	p.Lys1308Ter	p.K1308*	ENST00000257430	NM_000038.5	1308	Aaa/Taa																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94120794	94120794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011603-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	459	1142	2	ENST00000369303.4:c.257G>A	p.Arg86Gln	p.R86Q	ENST00000369303	NM_004440.3	86	cGg/cAg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2210798	2210798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011603-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			381	88	408	0	ENST00000398665.3:c.1295C>T	p.Ala432Val	p.A432V	ENST00000398665	NM_032482.2	432	gCa/gTa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112103076	112103077	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGAAAGA			P-0011603-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			218	83	323	0	ENST00000257430.4:c.415_422dup	p.Ser142LysfsTer31	p.S142Kfs*31	ENST00000257430	NM_000038.5	137	-/GAGAAAGA																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0013708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	128	409	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	263	376	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294045	1294045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			794	142	474	2	ENST00000310581.5:c.956C>T	p.Thr319Met	p.T319M	ENST00000310581	NM_198253.2	319	aCg/aTg																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149433724	149433724	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			930	182	450	0	ENST00000286301.3:c.2827G>C	p.Glu943Gln	p.E943Q	ENST00000286301	NM_005211.3	943	Gag/Cag																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30680745	30680745	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			848	110	508	0	ENST00000376406.3:c.974G>C	p.Gly325Ala	p.G325A	ENST00000376406	NM_014641.2	325	gGc/gCc																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	416200	416200	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	70	532	0	ENST00000399788.2:c.3986C>G	p.Ser1329Ter	p.S1329*	ENST00000399788	NM_001042603.1	1329	tCa/tGa																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21557535	21557535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	114	489	0	ENST00000382592.4:c.2310C>G	p.Phe770Leu	p.F770L	ENST00000382592	NM_014572.2	770	ttC/ttG																																												NEWRECORD																																		
RAD51C	0	MSKCC	GRCh37	17	56811519	56811519	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	53	465	0	ENST00000337432.4:c.1067C>G	p.Ser356Ter	p.S356*	ENST00000337432	NM_058216.2	356	tCa/tGa																																												NEWRECORD																																		
MAP2K2	0	MSKCC	GRCh37	19	4101129	4101129	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	92	291	0	ENST00000262948.5:c.593C>G	p.Ser198Cys	p.S198C	ENST00000262948	NM_030662.3	198	tCc/tGc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32169948	32169949	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			829	144	491	0	ENST00000375023.3:c.3659dup	p.Cys1220TrpfsTer15	p.C1220Wfs*15	ENST00000375023	NM_004557.3	1220	tgc/tgGc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145740375	145740375	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35842750		P-0012986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	79	351	0	ENST00000428558.2:c.1565G>A	p.Arg522His	p.R522H	ENST00000428558	NM_004260.3	522	cGc/cAc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117700238	117700238	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	105	543	0	ENST00000368508.3:c.2581G>C	p.Val861Leu	p.V861L	ENST00000368508	NM_002944.2	861	Gtt/Ctt																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81991567	81991567	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	190	926	0	ENST00000359376.3:c.3762A>T	p.Arg1254Ser	p.R1254S	ENST00000359376	NM_002661.3	1254	agA/agT																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938401	76938402	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	TTTTCGTTTCCTTTTTCCTTTATCA			P-0012986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	225	402	0	ENST00000373344.5:c.2322_2346dup	p.Ser783Ter	p.S783*	ENST00000373344	NM_000489.3	782	-/TGATAAAGGAAAAAGGAAACGAAAA																																												NEWRECORD																																		
XIAP	0	MSKCC	GRCh37	X	123025126	123025140	+	inframe_deletion	In_Frame_Del	DEL	TAAACAATATTCATT	TAAACAATATTCATT	-			P-0012986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	117	256	0	ENST00000355640.3:c.1019_1033del	p.Asn340_Leu344del	p.N340_L344del	ENST00000355640		339	aTAAACAATATTCATTta/ata																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0000386-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			33	28	123	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44833947	44833948	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0000386-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			31	80	295	0	ENST00000377967.4:c.372_373insTT	p.Asp125LeufsTer56	p.D125Lfs*56	ENST00000377967	NM_021140.2	124	tct/tcTTt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49418391	49418391	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000386-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			116	28	296	0	ENST00000301067.7:c.16022C>A	p.Ser5341Ter	p.S5341*	ENST00000301067	NM_003482.3	5341	tCa/tAa																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40485909	40485909	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000386-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			143	25	550	0	ENST00000264657.5:c.956G>A	p.Ser319Asn	p.S319N	ENST00000264657	NM_139276.2	319	aGt/aAt																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15376455	15376455	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000386-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			169	21	461	0	ENST00000263377.2:c.560-1G>T		p.X187_splice	ENST00000263377	NM_058243.2	187																																													NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31372595	31372595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000386-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			209	26	382	0	ENST00000328111.2:c.236G>A	p.Gly79Glu	p.G79E	ENST00000328111	NM_006892.3	79	gGg/gAg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107095	27107096	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0000386-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			77	67	196	0	ENST00000324856.7:c.6711_6712delGC	p.Leu2238AlafsTer39	p.L2238Afs*39	ENST00000324856	NM_006015.4	2236	CGc/c																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55599321	55599321	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	130	342	0	ENST00000288135.5:c.2447A>T	p.Asp816Val	p.D816V	ENST00000288135	NM_000222.2	816	gAc/gTc																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37618952	37618953	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0008001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	193	336	0	ENST00000447079.4:c.629dupA	p.Tyr210Ter	p.Y210*	ENST00000447079	NM_015083.1	210	tac/tAac																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	22	361	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	67	393	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	112	272	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138433491	138433491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	21	354	0	ENST00000289153.2:c.1121C>T	p.Ser374Leu	p.S374L	ENST00000289153	NM_006219.2	374	tCa/tTa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023108	27023108	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	77	135	2	ENST00000324856.7:c.214G>T	p.Glu72Ter	p.E72*	ENST00000324856	NM_006015.4	72	Gag/Tag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023126	27023126	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	59	112	0	ENST00000324856.7:c.232G>T	p.Glu78Ter	p.E78*	ENST00000324856	NM_006015.4	78	Gag/Tag																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25994400	25994400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	165	549	0	ENST00000435504.4:c.413C>T	p.Ser138Phe	p.S138F	ENST00000435504		138	tCc/tTc																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71027066	71027066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	144	344	0	ENST00000318789.4:c.1261C>A	p.Pro421Thr	p.P421T	ENST00000318789	NM_032682.5	421	Ccc/Acc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142226861	142226861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	90	420	0	ENST00000350721.4:c.4943C>T	p.Ser1648Phe	p.S1648F	ENST00000350721	NM_001184.3	1648	tCc/tTc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55524236	55524236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	198	396	0	ENST00000288135.5:c.55C>T	p.Arg19Cys	p.R19C	ENST00000288135	NM_000222.2	19	Cgc/Tgc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177490	56177490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	144	449	0	ENST00000399503.3:c.2463G>C	p.Leu821Phe	p.L821F	ENST00000399503	NM_005921.1	821	ttG/ttC																																												NEWRECORD																																		
HIST1H3F	0	MSKCC	GRCh37	6	26250561	26250561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1533	238	1030	0	ENST00000446824.2:c.273G>A	p.Met91Ile	p.M91I	ENST00000446824	NM_021018.2	91	atG/atA																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18699305	18699305	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	69	483	0	ENST00000266497.5:c.3406T>C	p.Tyr1136His	p.Y1136H	ENST00000266497		1136	Tat/Cat																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28623632	28623632	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	56	360	0	ENST00000241453.7:c.925A>G	p.Met309Val	p.M309V	ENST00000241453	NM_004119.2	309	Atg/Gtg																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32914776	32914776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	163	773	0	ENST00000380152.3:c.6284C>T	p.Ser2095Leu	p.S2095L	ENST00000380152		2095	tCa/tTa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29556314	29556314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	107	532	0	ENST00000358273.4:c.2681T>C	p.Phe894Ser	p.F894S	ENST00000358273	NM_001042492.2	894	tTt/tCt																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37864656	37864656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	68	509	0	ENST00000269571.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000269571		103	cGa/cAa																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56492862	56492862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	29	206	0	ENST00000407977.2:c.77G>A	p.Gly26Glu	p.G26E	ENST00000407977		26	gGa/gAa																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45867571	45867571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	184	356	0	ENST00000391945.4:c.737C>A	p.Ser246Tyr	p.S246Y	ENST00000391945	NM_000400.3	246	tCc/tAc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41566522	41566522	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	240	509	0	ENST00000263253.7:c.4399T>C	p.Tyr1467His	p.Y1467H	ENST00000263253	NM_001429.3	1467	Tac/Cac																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39922164	39922164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	309	593	0	ENST00000378444.4:c.4008C>G	p.Asp1336Glu	p.D1336E	ENST00000378444	NM_001123385.1	1336	gaC/gaG																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44896926	44896926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	123	505	0	ENST00000377967.4:c.646G>A	p.Glu216Lys	p.E216K	ENST00000377967	NM_021140.2	216	Gaa/Aaa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44923035	44923035	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	189	472	1	ENST00000377967.4:c.1896G>A	p.Trp632Ter	p.W632*	ENST00000377967	NM_021140.2	632	tgG/tgA																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039366	47039366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	205	563	0	ENST00000329236.7:c.758A>G	p.Asn253Ser	p.N253S	ENST00000329236	NM_001204466.1	253	aAc/aGc																																												NEWRECORD																																		
SH2D1A	0	MSKCC	GRCh37	X	123499615	123499615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	80	444	0	ENST00000371139.4:c.142C>T	p.His48Tyr	p.H48Y	ENST00000371139	NM_001114937.2	48	Cac/Tac																																												NEWRECORD																																		
BBC3	0	MSKCC	GRCh37	19	47731425	47731432	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCCTC	CGGGCCTC	-			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	39	69	0	ENST00000449228.1:c.360_367del	p.Arg121AlafsTer126	p.R121Afs*126	ENST00000449228	NM_001127240.2	120	ccGAGGCCCGcg/cccg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29653129	29653130	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	63	320	0	ENST00000358273.4:c.5127_5128insC	p.Asp1710ArgfsTer8	p.D1710Rfs*8	ENST00000358273	NM_001042492.2	1709	-/C																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31385071	31385093	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCTGCTGCTTTGCAGCAACAC	GAGCTGCTGCTTTGCAGCAACAC	-			P-0004924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	66	464	0	ENST00000328111.2:c.1466_1488del	p.Leu489ProfsTer57	p.L489Pfs*57	ENST00000328111	NM_006892.3	486	GAGCTGCTGCTTTGCAGCAACACg/g																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149465954	149465954	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	459	759	0	ENST00000286301.3:c.37A>G	p.Thr13Ala	p.T13A	ENST00000286301	NM_005211.3	13	Aca/Gca																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12871807	12871807	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	45	343	0	ENST00000228872.4:c.524C>A	p.Ser175Ter	p.S175*	ENST00000228872	NM_004064.3	175	tCa/tAa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18443797	18443797	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	67	524	0	ENST00000266497.5:c.770A>G	p.Glu257Gly	p.E257G	ENST00000266497		257	gAa/gGa																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	233	626	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39755585	39755585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	230	671	0	ENST00000288319.7:c.1180G>A	p.Gly394Arg	p.G394R	ENST00000288319	NM_182918.3	394	Ggg/Agg																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060912	38060912	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	1285	452	0	ENST00000250448.2:c.1077delC	p.Ile360Ter	p.I360*	ENST00000250448	NM_004496.3	359	ccC/cc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139396762	139396764	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	58	514	0	ENST00000277541.6:c.5344_5346del	p.Lys1782del	p.K1782del	ENST00000277541	NM_017617.3	1782	AAG/-																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41961323	41961324	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1753	369	1017	0	ENST00000219905.7:c.232dup	p.Thr78AsnfsTer4	p.T78Nfs*4	ENST00000219905	NM_001164273.1	77	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0005286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	30	414	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55248998	55248999	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGGCCAGCG			P-0005286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	15	337	0	ENST00000275493.2:c.2300_2308dup	p.Ala767_Val769dup	p.A767_V769dup	ENST00000275493	NM_005228.3	767	atg/aTGGCCAGCGtg																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41240106	41240106	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs34733279		P-0005286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	10	108	0	ENST00000379561.5:c.244G>A	p.Asp82Asn	p.D82N	ENST00000379561	NM_002015.3	82	Gac/Aac																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	268	314	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	263	379	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	153	255	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	89	224	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	685	793	1	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178938931	178938931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	225	166	0	ENST00000263967.3:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000263967	NM_006218.2	725	Gat/Aat																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604785	48604786	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGACGA			P-0010352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	152	328	0	ENST00000342988.3:c.1610_1615dup	p.Asp537_Glu538dup	p.D537_E538dup	ENST00000342988	NM_005359.5	537	cta/ctAGACGAa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	457	531	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	355	790	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	168	392	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45856014	45856014	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	265	582	2	ENST00000391945.4:c.1892G>A	p.Arg631His	p.R631H	ENST00000391945	NM_000400.3	631	cGc/cAc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	344	1010	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61720073	61720073	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	259	596	0	ENST00000401558.2:c.1361A>G	p.Tyr454Cys	p.Y454C	ENST00000401558	NM_003400.3	454	tAt/tGt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175696	112175696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	224	496	0	ENST00000257430.4:c.4405C>T	p.Gln1469Ter	p.Q1469*	ENST00000257430	NM_000038.5	1469	Caa/Taa																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9943623	9943623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	247	478	0	ENST00000330684.3:c.1318G>A	p.Val440Ile	p.V440I	ENST00000330684	NM_001134407.1	440	Gtc/Atc																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411387	63411387	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	945	776	0	ENST00000330258.3:c.1780del	p.His594ThrfsTer59	p.H594Tfs*59	ENST00000330258	NM_152424.3	594	Cac/ac																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117687	70117688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	721	769	0	ENST00000245479.2:c.156dup	p.Phe53ValfsTer199	p.F53Vfs*199	ENST00000245479	NM_000346.3	52	acg/acGg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	77	262	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	169	472	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11123788	11123788	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	146	425	0	ENST00000344626.4:c.2438C>T	p.Ser813Leu	p.S813L	ENST00000344626	NM_003072.3	813	tCa/tTa																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215645381	215645381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	117	731	0	ENST00000260947.4:c.1217G>T	p.Arg406Leu	p.R406L	ENST00000260947	NM_000465.2	406	cGa/cTa																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78866524	78866544	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGAGGGAGGGAGTTTGAC	CCCAGAGGGAGGGAGTTTGAC	-			P-0012186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	48	439	0	ENST00000306801.3:c.2102_2122del		p.X701_splice	ENST00000306801	NM_020761.2	701																																													NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36206857	36206858	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTCC			P-0012186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	180	278	0	ENST00000300305.3:c.650_654dup	p.Leu219GlyfsTer20	p.L219Gfs*20	ENST00000300305		218	-/GGAGC																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32188823	32188823	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs8192585		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	126	527	2	ENST00000375023.3:c.731C>T	p.Ser244Leu	p.S244L	ENST00000375023	NM_004557.3	244	tCg/tTg																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193104712	193104712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	81	402	0	ENST00000367435.3:c.416G>A	p.Arg139Gln	p.R139Q	ENST00000367435	NM_024529.4	139	cGa/cAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	258	638	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	60	336	1	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	137	455	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	57	299	1	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	45	383	0	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1078	222	642	1	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118343093	118343093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	51	334	0	ENST00000534358.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000534358	NM_005933.3	407	Cga/Tga																																												NEWRECORD																																		
MYD88	0	MSKCC	GRCh37	3	38180232	38180232	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	61	548	0	ENST00000396334.3:c.80T>C	p.Val27Ala	p.V27A	ENST00000396334	NM_002468.4	27	gTc/gCc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36171607	36171607	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	85	261	0	ENST00000300305.3:c.958C>T	p.Arg320Ter	p.R320*	ENST00000300305		320	Cga/Tga																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135781467	135781467	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1306	273	844	3	ENST00000298552.3:c.1498C>T	p.Arg500Ter	p.R500*	ENST00000298552	NM_001162426.1	500	Cga/Tga																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28636143	28636143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	97	597	0	ENST00000241453.7:c.229G>A	p.Glu77Lys	p.E77K	ENST00000241453	NM_004119.2	77	Gaa/Aaa																																												NEWRECORD																																		
YAP1	0	MSKCC	GRCh37	11	101984924	101984924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	99	294	1	ENST00000282441.5:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000282441	NM_001130145.2	124	cGa/cAa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117629975	117629975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	131	480	0	ENST00000368508.3:c.6551G>T	p.Arg2184Ile	p.R2184I	ENST00000368508	NM_002944.2	2184	aGa/aTa																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	45	384	0	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72890221	72890221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	107	592	2	ENST00000325599.8:c.461G>A	p.Arg154Gln	p.R154Q	ENST00000325599	NM_018130.2	154	cGa/cAa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106545584	106545584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	74	429	2	ENST00000359195.3:c.3061C>T	p.Arg1021Cys	p.R1021C	ENST00000359195	NM_002649.2	1021	Cgt/Tgt																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61145543	61145543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	74	434	0	ENST00000295025.8:c.655C>T	p.Arg219Cys	p.R219C	ENST00000295025	NM_002908.2	219	Cgt/Tgt																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67645156	67645156	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	49	558	3	ENST00000264010.4:c.421G>T	p.Glu141Ter	p.E141*	ENST00000264010	NM_006565.3	141	Gaa/Taa																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252866	36252866	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	74	436	1	ENST00000300305.3:c.496C>T	p.Arg166Ter	p.R166*	ENST00000300305		166	Cga/Tga																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66280031	66280031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	151	506	1	ENST00000273854.3:c.1658G>A	p.Arg553Gln	p.R553Q	ENST00000273854	NM_004439.5	553	cGa/cAa																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46251038	46251038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	234	729	2	ENST00000371998.3:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000371998		16	cGa/cAa																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484414	57484414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	63	492	0	ENST00000371085.3:c.595C>T	p.Arg199Cys	p.R199C	ENST00000371085	NM_000516.4	199	Cgc/Tgc																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86679547	86679547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	72	303	0	ENST00000274376.6:c.2708G>A	p.Arg903Gln	p.R903Q	ENST00000274376	NM_002890.2	903	cGa/cAa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118361991	118361991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	128	464	0	ENST00000534358.1:c.4777C>T	p.Arg1593Cys	p.R1593C	ENST00000534358	NM_005933.3	1593	Cgc/Tgc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	148	554	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178095	56178095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	40	373	0	ENST00000399503.3:c.3068G>A	p.Arg1023His	p.R1023H	ENST00000399503	NM_005921.1	1023	cGc/cAc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	116	425	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61719580	61719580	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	42	451	0	ENST00000401558.2:c.1603G>T	p.Asp535Tyr	p.D535Y	ENST00000401558	NM_003400.3	535	Gat/Tat																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27093043	27093043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	155	539	0	ENST00000324856.7:c.2974G>T	p.Glu992Ter	p.E992*	ENST00000324856	NM_006015.4	992	Gaa/Taa																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86685209	86685209	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	147	423	1	ENST00000274376.6:c.2926-1G>T		p.X976_splice	ENST00000274376	NM_002890.2	976																																													NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133250289	133250289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	179	574	0	ENST00000320574.5:c.1231G>T	p.Val411Leu	p.V411L	ENST00000320574	NM_006231.2	411	Gtg/Ttg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29528490	29528490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	134	597	0	ENST00000358273.4:c.1247G>A	p.Arg416Gln	p.R416Q	ENST00000358273	NM_001042492.2	416	cGa/cAa																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162746018	162746018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	109	520	1	ENST00000367921.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000367921	NM_006182.2	714	cGa/cAa																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	107	389	0	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt																																												NEWRECORD																																		
PPP6C	0	MSKCC	GRCh37	9	127911992	127911992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1396	271	817	1	ENST00000373547.4:c.878G>A	p.Arg293His	p.R293H	ENST00000373547	NM_002721.4	293	cGt/cAt																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50480110	50480110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	107	386	0	ENST00000394963.4:c.344C>T	p.Ala115Val	p.A115V	ENST00000394963	NM_003076.4	115	gCg/gTg																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81374403	81374403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	164	451	0	ENST00000222390.5:c.659G>A	p.Arg220Gln	p.R220Q	ENST00000222390	NM_000601.4	220	cGa/cAa																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86649000	86649000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	85	387	0	ENST00000274376.6:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000274376	NM_002890.2	427	cGa/cAa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344036	118344036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	63	441	1	ENST00000534358.1:c.2162G>A	p.Arg721Gln	p.R721Q	ENST00000534358	NM_005933.3	721	cGa/cAa																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134988	41134988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	203	875	2	ENST00000379561.5:c.640C>T	p.Arg214Cys	p.R214C	ENST00000379561	NM_002015.3	214	Cgt/Tgt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	154	510	1	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140494187	140494187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	170	676	1	ENST00000288602.6:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000288602	NM_004333.4	354	cGa/cAa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29004278	29004278	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	188	506	1	ENST00000282397.4:c.1015C>T	p.Arg339Ter	p.R339*	ENST00000282397	NM_002019.4	339	Cga/Tga																																												NEWRECORD																																		
PPP6C	0	MSKCC	GRCh37	9	127915952	127915952	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1320	101	793	1	ENST00000373547.4:c.529C>T	p.Arg177Ter	p.R177*	ENST00000373547	NM_002721.4	177	Cga/Tga																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70405958	70405958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	190	630	2	ENST00000373644.4:c.3472C>T	p.Arg1158Trp	p.R1158W	ENST00000373644	NM_030625.2	1158	Cgg/Tgg																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67588951	67588951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1057520690		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	120	343	1	ENST00000274335.5:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000274335		348	Cga/Tga																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17951085	17951085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	198	558	0	ENST00000458235.1:c.1208G>A	p.Arg403His	p.R403H	ENST00000458235	NM_000215.3	403	cGc/cAc																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162745588	162745588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	152	545	1	ENST00000367921.3:c.2003G>A	p.Arg668His	p.R668H	ENST00000367921	NM_006182.2	668	cGc/cAc																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227661035	227661035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	68	409	0	ENST00000305123.5:c.2420C>A	p.Ser807Tyr	p.S807Y	ENST00000305123	NM_005544.2	807	tCt/tAt																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55955593	55955593	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	208	723	2	ENST00000263923.4:c.3352C>T	p.Arg1118Ter	p.R1118*	ENST00000263923	NM_002253.2	1118	Cga/Tga																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8319959	8319959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	81	349	0	ENST00000356435.5:c.5542G>A	p.Val1848Ile	p.V1848I	ENST00000356435		1848	Gtt/Att																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25965761	25965761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	53	543	0	ENST00000435504.4:c.3445C>T	p.Arg1149Cys	p.R1149C	ENST00000435504		1149	Cgt/Tgt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152265323	152265323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	71	462	0	ENST00000206249.3:c.776G>A	p.Arg259Gln	p.R259Q	ENST00000206249	NM_000125.3	259	cGa/cAa																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120461167	120461167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	43	375	0	ENST00000256646.2:c.5791C>T	p.Arg1931Cys	p.R1931C	ENST00000256646	NM_024408.3	1931	Cgc/Tgc																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99454591	99454591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	173	647	2	ENST00000268035.6:c.1510C>T	p.Arg504Cys	p.R504C	ENST00000268035	NM_000875.3	504	Cgc/Tgc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55136804	55136804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	109	432	2	ENST00000257290.5:c.1126C>T	p.Arg376Ter	p.R376*	ENST00000257290	NM_006206.4	376	Cga/Tga																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039372	47039372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	76	710	0	ENST00000329236.7:c.764G>A	p.Arg255His	p.R255H	ENST00000329236	NM_001204466.1	255	cGc/cAc																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86672759	86672759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	115	484	1	ENST00000274376.6:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000274376	NM_002890.2	749	cGa/cAa																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78866640	78866640	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	52	384	0	ENST00000306801.3:c.2213C>A	p.Ser738Tyr	p.S738Y	ENST00000306801	NM_020761.2	738	tCt/tAt																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55958788	55958788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	202	670	0	ENST00000263923.4:c.3065G>A	p.Arg1022Gln	p.R1022Q	ENST00000263923	NM_002253.2	1022	cGa/cAa																																												NEWRECORD																																		
MAP3K13	9175	MSKCC	GRCh37	3	185181425	185181425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1435276633		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	258	615	0	ENST00000265026.3:c.1366C>T	p.Arg456Ter	p.R456*	ENST00000265026	NM_004721.4	456	Cga/Tga																																												NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55595622	55595622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	42	254	0	ENST00000288135.5:c.2112G>T	p.Lys704Asn	p.K704N	ENST00000288135	NM_000222.2	704	aaG/aaT																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31389107	31389107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	95	564	1	ENST00000328111.2:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000328111	NM_006892.3	674	Gaa/Aaa																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67663406	67663406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	179	548	1	ENST00000264010.4:c.1807C>T	p.Arg603Cys	p.R603C	ENST00000264010	NM_006565.3	603	Cgc/Tgc																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241669390	241669390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	186	420	2	ENST00000366560.3:c.817G>A	p.Ala273Thr	p.A273T	ENST00000366560	NM_000143.3	273	Gca/Aca																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38950099	38950099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	121	490	3	ENST00000357387.3:c.3851C>T	p.Ser1284Leu	p.S1284L	ENST00000357387	NM_152756.3	1284	tCg/tTg																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81388086	81388086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	50	503	0	ENST00000222390.5:c.289C>A	p.Leu97Ile	p.L97I	ENST00000222390	NM_000601.4	97	Ctc/Atc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117715350	117715350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	88	396	0	ENST00000368508.3:c.1139G>T	p.Arg380Ile	p.R380I	ENST00000368508	NM_002944.2	380	aGa/aTa																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46521540	46521540	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	85	673	1	ENST00000262741.5:c.868G>T	p.Glu290Ter	p.E290*	ENST00000262741	NM_003629.3	290	Gaa/Taa																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115252323	115252323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	115	495	0	ENST00000369535.4:c.317C>T	p.Ser106Leu	p.S106L	ENST00000369535	NM_002524.4	106	tCg/tTg																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155874197	155874197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	92	582	0	ENST00000368323.3:c.334C>T	p.Arg112Cys	p.R112C	ENST00000368323	NM_006912.5	112	Cgt/Tgt																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156851361	156851361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	146	566	1	ENST00000524377.1:c.2318G>A	p.Ser773Asn	p.S773N	ENST00000524377	NM_002529.3	773	aGc/aAc																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	175956135	175956135	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	163	564	0	ENST00000367669.3:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000367669	NM_022457.5	693	Gaa/Taa																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204518428	204518428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	109	613	0	ENST00000367182.3:c.1091G>T	p.Arg364Ile	p.R364I	ENST00000367182	NM_001278516.1	364	aGa/aTa																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241667423	241667423	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	233	766	3	ENST00000366560.3:c.1027C>T	p.Arg343Ter	p.R343*	ENST00000366560	NM_000143.3	343	Cga/Tga																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70450655	70450655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1197	95	675	0	ENST00000373644.4:c.5495C>T	p.Ser1832Leu	p.S1832L	ENST00000373644	NM_030625.2	1832	tCg/tTg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717613	89717613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	135	429	0	ENST00000371953.3:c.638C>T	p.Pro213Leu	p.P213L	ENST00000371953	NM_000314.4	213	cCt/cTt																																												NEWRECORD																																		
SUFU	0	MSKCC	GRCh37	10	104375086	104375086	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs36049457		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	86	553	0	ENST00000369902.3:c.1084C>T	p.Arg362Cys	p.R362C	ENST00000369902	NM_016169.3	362	Cgc/Tgc																																												NEWRECORD																																		
RPS6KB2	0	MSKCC	GRCh37	11	67202472	67202472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	96	629	0	ENST00000312629.5:c.1281C>A	p.Phe427Leu	p.F427L	ENST00000312629	NM_003952.2	427	ttC/ttA																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77070063	77070063	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	32	293	0	ENST00000356341.3:c.478-1G>T		p.X160_splice	ENST00000356341	NM_002576.4	160																																													NEWRECORD																																		
EED	0	MSKCC	GRCh37	11	85961435	85961435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	68	528	1	ENST00000263360.6:c.212G>A	p.Gly71Glu	p.G71E	ENST00000263360	NM_003797.3	71	gGa/gAa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108199881	108199881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	40	439	1	ENST00000278616.4:c.7223C>T	p.Ser2408Leu	p.S2408L	ENST00000278616	NM_000051.3	2408	tCg/tTg																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119149373	119149373	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	49	282	0	ENST00000264033.4:c.1381G>T	p.Glu461Ter	p.E461*	ENST00000264033	NM_005188.3	461	Gaa/Taa																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	402153	402153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	212	762	0	ENST00000399788.2:c.4638G>T	p.Lys1546Asn	p.K1546N	ENST00000399788	NM_001042603.1	1546	aaG/aaT																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1022573	1022573	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	86	516	0	ENST00000358495.3:c.1241A>C	p.Lys414Thr	p.K414T	ENST00000358495	NM_134424.2	414	aAa/aCa																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1023634	1023634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	83	487	1	ENST00000358495.3:c.930G>T	p.Glu310Asp	p.E310D	ENST00000358495	NM_134424.2	310	gaG/gaT																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18576934	18576934	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	114	584	3	ENST00000266497.5:c.2342G>A	p.Arg781His	p.R781H	ENST00000266497		781	cGc/cAc																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18699320	18699320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	60	504	0	ENST00000266497.5:c.3421C>A	p.Leu1141Ile	p.L1141I	ENST00000266497		1141	Ctt/Att																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18800921	18800921	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201612275		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	134	532	0	ENST00000266497.5:c.4297G>A	p.Asp1433Asn	p.D1433N	ENST00000266497		1433	Gat/Aat																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49427368	49427368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	54	458	1	ENST00000301067.7:c.11120G>A	p.Arg3707Gln	p.R3707Q	ENST00000301067	NM_003482.3	3707	cGa/cAa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49438282	49438282	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192216625		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	64	465	0	ENST00000301067.7:c.4987G>A	p.Glu1663Lys	p.E1663K	ENST00000301067	NM_003482.3	1663	Gaa/Aaa																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121434071	121434071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	164	572	0	ENST00000257555.6:c.962G>A	p.Arg321His	p.R321H	ENST00000257555		321	cGc/cAc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28971153	28971153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	85	511	0	ENST00000282397.4:c.1604G>A	p.Cys535Tyr	p.C535Y	ENST00000282397	NM_002019.4	535	tGc/tAc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32920979	32920979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	88	441	0	ENST00000380152.3:c.6953G>A	p.Arg2318Gln	p.R2318Q	ENST00000380152		2318	cGa/cAa																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134955	41134955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1472	117	909	1	ENST00000379561.5:c.673C>T	p.Arg225Cys	p.R225C	ENST00000379561	NM_002015.3	225	Cgt/Tgt																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73345270	73345270	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	80	515	0	ENST00000377767.4:c.1619T>C	p.Val540Ala	p.V540A	ENST00000377767	NM_014953.3	540	gTt/gCt																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103504585	103504585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	84	511	1	ENST00000355739.4:c.206G>A	p.Arg69Gln	p.R69Q	ENST00000355739	NM_000123.3	69	cGa/cAa																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105241535	105241535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	83	561	0	ENST00000349310.3:c.445G>A	p.Glu149Lys	p.E149K	ENST00000349310	NM_001014432.1	149	Gag/Aag																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41988692	41988692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	228	797	1	ENST00000219905.7:c.1484G>A	p.Arg495Gln	p.R495Q	ENST00000219905	NM_001164273.1	495	cGa/cAa																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88669573	88669573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	68	493	0	ENST00000360948.2:c.1325C>T	p.Ala442Val	p.A442V	ENST00000360948	NM_001012338.2	442	gCc/gTc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3900366	3900366	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	145	538	0	ENST00000262367.5:c.730A>G	p.Thr244Ala	p.T244A	ENST00000262367	NM_004380.2	244	Acg/Gcg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858317	9858317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	113	444	1	ENST00000330684.3:c.3084G>T	p.Gln1028His	p.Q1028H	ENST00000330684	NM_001134407.1	1028	caG/caT																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934931	9934931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	59	432	0	ENST00000330684.3:c.1359G>T	p.Lys453Asn	p.K453N	ENST00000330684	NM_001134407.1	453	aaG/aaT																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828024	72828024	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200701402		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1771	333	1005	1	ENST00000268489.5:c.8557G>A	p.Ala2853Thr	p.A2853T	ENST00000268489	NM_006885.3	2853	Gca/Aca																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7982728	7982728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	87	346	0	ENST00000319144.4:c.1057C>G	p.Pro353Ala	p.P353A	ENST00000319144	NM_001139.2	353	Ccc/Gcc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16021309	16021309	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	192	614	0	ENST00000268712.3:c.1948A>C	p.Ile650Leu	p.I650L	ENST00000268712	NM_006311.3	650	Att/Ctt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29559096	29559096	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	17	97	0	ENST00000358273.4:c.3203T>G	p.Leu1068Trp	p.L1068W	ENST00000358273	NM_001042492.2	1068	tTg/tGg																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435581	56435581	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200166143		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	122	443	0	ENST00000407977.2:c.1556G>A	p.Arg519Gln	p.R519Q	ENST00000407977		519	cGa/cAa																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56438277	56438277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	102	426	0	ENST00000407977.2:c.716C>T	p.Ala239Val	p.A239V	ENST00000407977		239	gCc/gTc																																												NEWRECORD																																		
RAD51C	0	MSKCC	GRCh37	17	56787223	56787223	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	149	537	2	ENST00000337432.4:c.709C>T	p.Arg237Ter	p.R237*	ENST00000337432	NM_058216.2	237	Cga/Tga																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58740436	58740436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1195	222	778	1	ENST00000305921.3:c.1341G>T	p.Glu447Asp	p.E447D	ENST00000305921	NM_003620.3	447	gaG/gaT																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59821852	59821853	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	72	574	0	ENST00000259008.2:c.2197dup	p.Thr733AsnfsTer4	p.T733Nfs*4	ENST00000259008	NM_032043.2	733	aca/aAca																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39609317	39609317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	75	464	0	ENST00000262039.4:c.1619C>A	p.Ser540Tyr	p.S540Y	ENST00000262039	NM_002647.2	540	tCt/tAt																																												NEWRECORD																																		
MALT1	0	MSKCC	GRCh37	18	56409145	56409145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	102	724	2	ENST00000348428.3:c.1652G>A	p.Arg551Gln	p.R551Q	ENST00000348428	NM_006785.3	551	cGa/cAa																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11100016	11100016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	354	553	2	ENST00000344626.4:c.1142G>A	p.Arg381Gln	p.R381Q	ENST00000344626	NM_003072.3	381	cGa/cAa																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15299898	15299898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	91	588	1	ENST00000263388.2:c.1280G>A	p.Arg427His	p.R427H	ENST00000263388	NM_000435.2	427	cGc/cAc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15355353	15355353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201062276		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	44	211	0	ENST00000263377.2:c.2270C>T	p.Pro757Leu	p.P757L	ENST00000263377	NM_058243.2	757	cCg/cTg																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17948796	17948796	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201972084		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	208	649	1	ENST00000458235.1:c.1646G>A	p.Arg549Gln	p.R549Q	ENST00000458235	NM_000215.3	549	cGa/cAa																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41765472	41765472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1050	104	528	1	ENST00000301178.4:c.2348C>T	p.Ser783Leu	p.S783L	ENST00000301178	NM_021913.4	783	tCg/tTg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52722946	52722946	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	129	506	0	ENST00000322088.6:c.1131C>A	p.Cys377Ter	p.C377*	ENST00000322088	NM_014225.5	377	tgC/tgA																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29940480	29940480	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	82	550	0	ENST00000389048.3:c.751G>T	p.Asp251Tyr	p.D251Y	ENST00000389048	NM_004304.4	251	Gac/Tac																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47693811	47693811	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	103	472	1	ENST00000233146.2:c.1525A>G	p.Lys509Glu	p.K509E	ENST00000233146	NM_000251.2	509	Aaa/Gaa																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111921773	111921773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	186	574	0	ENST00000393256.3:c.562C>T	p.Arg188Cys	p.R188C	ENST00000393256	NM_006538.4	188	Cgt/Tgt																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202136264	202136264	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	144	511	2	ENST00000358485.4:c.508G>T	p.Glu170Ter	p.E170*	ENST00000358485	NM_001080125.1	170	Gaa/Taa																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225378322	225378322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	49	513	0	ENST00000264414.4:c.573G>T	p.Met191Ile	p.M191I	ENST00000264414	NM_003590.4	191	atG/atT																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31381366	31381366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	72	374	0	ENST00000328111.2:c.1091G>A	p.Arg364His	p.R364H	ENST00000328111	NM_006892.3	364	cGt/cAt																																												NEWRECORD																																		
SRC	0	MSKCC	GRCh37	20	36028692	36028692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	66	506	1	ENST00000358208.4:c.1034G>A	p.Ser345Asn	p.S345N	ENST00000358208		345	aGc/aAc																																												NEWRECORD																																		
U2AF1	0	MSKCC	GRCh37	21	44513235	44513235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	50	296	0	ENST00000291552.4:c.700C>T	p.Arg234Cys	p.R234C	ENST00000291552	NM_006758.2	234	Cgt/Tgt																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41553266	41553266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	162	556	1	ENST00000263253.7:c.3355G>A	p.Asp1119Asn	p.D1119N	ENST00000263253	NM_001429.3	1119	Gat/Aat																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164267	47164267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	35	433	0	ENST00000409792.3:c.1859G>A	p.Arg620Gln	p.R620Q	ENST00000409792	NM_014159.6	620	cGa/cAa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165275	47165275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	58	452	0	ENST00000409792.3:c.851C>A	p.Ser284Tyr	p.S284Y	ENST00000409792	NM_014159.6	284	tCc/tAc																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49933635	49933635	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1251	267	921	0	ENST00000296474.3:c.2642A>C	p.Lys881Thr	p.K881T	ENST00000296474	NM_002447.2	881	aAg/aCg																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71008475	71008475	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	239	678	0	ENST00000318789.4:c.1957A>G	p.Thr653Ala	p.T653A	ENST00000318789	NM_032682.5	653	Aca/Gca																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71247523	71247523	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	73	351	0	ENST00000318789.4:c.10G>T	p.Glu4Ter	p.E4*	ENST00000318789	NM_032682.5	4	Gaa/Taa																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89521758	89521758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	85	374	0	ENST00000336596.2:c.2835G>T	p.Lys945Asn	p.K945N	ENST00000336596	NM_005233.5	945	aaG/aaT																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134670880	134670880	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	32	192	0	ENST00000398015.3:c.791G>T	p.Ser264Ile	p.S264I	ENST00000398015	NM_004441.4	264	aGc/aTc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134880917	134880917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	86	501	0	ENST00000398015.3:c.1480G>A	p.Asp494Asn	p.D494N	ENST00000398015	NM_004441.4	494	Gat/Aat																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142176564	142176564	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	78	482	0	ENST00000350721.4:c.7537T>G	p.Phe2513Val	p.F2513V	ENST00000350721	NM_001184.3	2513	Ttt/Gtt																																												NEWRECORD																																		
ATR	545	MSKCC	GRCh37	3	142268413	142268413	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	43	405	0	ENST00000350721.4:c.3079G>T	p.Glu1027Ter	p.E1027*	ENST00000350721	NM_001184.3	1027	Gag/Tag																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142269072	142269072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	178	472	0	ENST00000350721.4:c.2878C>T	p.Arg960Ter	p.R960*	ENST00000350721	NM_001184.3	960	Cga/Tga																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185181426	185181426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	70	608	1	ENST00000265026.3:c.1367G>A	p.Arg456Gln	p.R456Q	ENST00000265026	NM_004721.4	456	cGa/cAa																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185184733	185184733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1088	90	609	0	ENST00000265026.3:c.1625C>T	p.Ser542Phe	p.S542F	ENST00000265026	NM_004721.4	542	tCt/tTt																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55140703	55140703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	67	493	0	ENST00000257290.5:c.1564C>T	p.Arg522Cys	p.R522C	ENST00000257290	NM_006206.4	522	Cgt/Tgt																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55161374	55161374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	69	553	0	ENST00000257290.5:c.3205G>T	p.Asp1069Tyr	p.D1069Y	ENST00000257290	NM_006206.4	1069	Gac/Tac																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66197747	66197747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	158	516	0	ENST00000273854.3:c.2952G>T	p.Glu984Asp	p.E984D	ENST00000273854	NM_004439.5	984	gaG/gaT																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66233097	66233097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	69	591	0	ENST00000273854.3:c.1902G>T	p.Lys634Asn	p.K634N	ENST00000273854	NM_004439.5	634	aaG/aaT																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106164733	106164733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	123	296	0	ENST00000380013.4:c.3601C>T	p.Arg1201Cys	p.R1201C	ENST00000380013	NM_001127208.2	1201	Cgc/Tgc																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153258980	153258980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	143	476	0	ENST00000281708.4:c.835G>T	p.Asp279Tyr	p.D279Y	ENST00000281708	NM_033632.3	279	Gac/Tac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187629096	187629096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	70	504	0	ENST00000441802.2:c.1886C>T	p.Ser629Leu	p.S629L	ENST00000441802	NM_005245.3	629	tCg/tTg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56180548	56180548	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	58	417	0	ENST00000399503.3:c.3877G>T	p.Glu1293Ter	p.E1293*	ENST00000399503	NM_005921.1	1293	Gaa/Taa																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57754304	57754304	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	147	487	3	ENST00000274289.3:c.547C>T	p.Arg183Ter	p.R183*	ENST00000274289	NM_006622.3	183	Cga/Tga																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86629093	86629093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	36	371	0	ENST00000274376.6:c.838G>A	p.Asp280Asn	p.D280N	ENST00000274376	NM_002890.2	280	Gat/Aat																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149502701	149502701	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	157	614	0	ENST00000261799.4:c.2087A>G	p.Asn696Ser	p.N696S	ENST00000261799	NM_002609.3	696	aAc/aGc																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	401700	401700	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200311468		P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	111	432	4	ENST00000380956.4:c.1022C>T	p.Ala341Val	p.A341V	ENST00000380956	NM_001195286.1	341	gCg/gTg																																												NEWRECORD																																		
HIST1H3G	0	MSKCC	GRCh37	6	26271338	26271339	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1822	130	1212	2	ENST00000305910.3:c.274_275delinsTT	p.Ala92Phe	p.A92F	ENST00000305910	NM_003534.2	92	GCc/TTc																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33287579	33287579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	148	408	0	ENST00000374542.5:c.1518G>T	p.Lys506Asn	p.K506N	ENST00000374542	NM_001141970.1	506	aaG/aaT																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33287941	33287941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	63	525	1	ENST00000374542.5:c.1312G>A	p.Glu438Lys	p.E438K	ENST00000374542	NM_001141970.1	438	Gaa/Aaa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117680970	117680970	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	99	297	0	ENST00000368508.3:c.3648+2T>C		p.X1216_splice	ENST00000368508	NM_002944.2	1216																																													NEWRECORD																																		
IFNGR1	0	MSKCC	GRCh37	6	137519313	137519313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	153	515	0	ENST00000367739.4:c.1325G>A	p.Gly442Glu	p.G442E	ENST00000367739	NM_000416.2	442	gGa/gAa																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149983101	149983101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	81	599	0	ENST00000253339.5:c.3157G>A	p.Glu1053Lys	p.E1053K	ENST00000253339		1053	Gag/Aag																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152265335	152265335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	61	521	0	ENST00000206249.3:c.788G>A	p.Arg263Lys	p.R263K	ENST00000206249	NM_000125.3	263	aGa/aAa																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157521884	157521884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	130	441	2	ENST00000346085.5:c.4156C>T	p.Arg1386Cys	p.R1386C	ENST00000346085	NM_020732.3	1386	Cgc/Tgc																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2979507	2979507	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1198	101	708	0	ENST00000396946.4:c.740G>T	p.Arg247Ile	p.R247I	ENST00000396946	NM_032415.4	247	aGa/aTa																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81381520	81381520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	81	650	1	ENST00000222390.5:c.541C>T	p.Arg181Ter	p.R181*	ENST00000222390	NM_000601.4	181	Cga/Tga																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148523560	148523560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	53	386	1	ENST00000320356.2:c.893G>A	p.Arg298His	p.R298H	ENST00000320356	NM_004456.4	298	cGt/cAt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151841908	151841908	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	81	568	0	ENST00000262189.6:c.14233G>T	p.Glu4745Ter	p.E4745*	ENST00000262189	NM_170606.2	4745	Gaa/Taa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152012382	152012382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	156	514	0	ENST00000262189.6:c.431C>A	p.Ser144Tyr	p.S144Y	ENST00000262189	NM_170606.2	144	tCc/tAc																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152345830	152345830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1364	146	786	2	ENST00000359321.1:c.740C>A	p.Ser247Tyr	p.S247Y	ENST00000359321	NM_005431.1	247	tCt/tAt																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90990534	90990534	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	110	339	0	ENST00000265433.3:c.498T>G	p.Ile166Met	p.I166M	ENST00000265433	NM_002485.4	166	atT/atG																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98238329	98238329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	121	448	1	ENST00000331920.6:c.1715C>T	p.Ala572Val	p.A572V	ENST00000331920	NM_000264.3	572	gCg/gTg																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98244310	98244310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	155	492	0	ENST00000331920.6:c.667C>A	p.Leu223Ile	p.L223I	ENST00000331920	NM_000264.3	223	Ctt/Att																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110250101	110250101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	104	446	0	ENST00000374672.4:c.574G>A	p.Asp192Asn	p.D192N	ENST00000374672	NM_004235.4	192	Gac/Aac																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135781074	135781074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1307	252	874	1	ENST00000298552.3:c.1891G>A	p.Ala631Thr	p.A631T	ENST00000298552	NM_001162426.1	631	Gca/Aca																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135781090	135781090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	246	890	0	ENST00000298552.3:c.1875G>T	p.Glu625Asp	p.E625D	ENST00000298552	NM_001162426.1	625	gaG/gaT																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135782130	135782130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	88	573	0	ENST00000298552.3:c.1426G>T	p.Asp476Tyr	p.D476Y	ENST00000298552	NM_001162426.1	476	Gat/Tat																																												NEWRECORD																																		
ZRSR2	0	MSKCC	GRCh37	X	15822322	15822322	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	215	681	0	ENST00000307771.7:c.399+2T>C		p.X133_splice	ENST00000307771	NM_005089.3	133																																													NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53224432	53224432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	203	747	1	ENST00000375401.3:c.3281C>A	p.Ser1094Tyr	p.S1094Y	ENST00000375401	NM_004187.3	1094	tCt/tAt																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53228235	53228235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1198	199	751	1	ENST00000375401.3:c.2167G>A	p.Asp723Asn	p.D723N	ENST00000375401	NM_004187.3	723	Gac/Aac																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765598	66765598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	89	656	1	ENST00000374690.3:c.610G>A	p.Glu204Lys	p.E204K	ENST00000374690	NM_000044.3	204	Gaa/Aaa																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765778	66765778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1240	131	769	0	ENST00000374690.3:c.790C>T	p.Arg264Trp	p.R264W	ENST00000374690	NM_000044.3	264	Cgg/Tgg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70344096	70344096	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1450	98	878	0	ENST00000374080.3:c.1832A>G	p.His611Arg	p.H611R	ENST00000374080		611	cAc/cGc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70351950	70351950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	103	758	2	ENST00000374080.3:c.4147G>A	p.Ala1383Thr	p.A1383T	ENST00000374080		1383	Gcc/Acc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76845323	76845323	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	63	684	1	ENST00000373344.5:c.6198T>A	p.Asp2066Glu	p.D2066E	ENST00000373344	NM_000489.3	2066	gaT/gaA																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76872199	76872199	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	43	466	3	ENST00000373344.5:c.5449-1G>T		p.X1817_splice	ENST00000373344	NM_000489.3	1817																																													NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76918870	76918870	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	232	796	0	ENST00000373344.5:c.4120+1G>A		p.X1374_splice	ENST00000373344	NM_000489.3	1374																																													NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100617589	100617589	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	77	642	0	ENST00000308731.7:c.480A>C	p.Lys160Asn	p.K160N	ENST00000308731	NM_000061.2	160	aaA/aaC																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123211837	123211837	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	129	651	2	ENST00000218089.9:c.2704G>T	p.Glu902Ter	p.E902*	ENST00000218089	NM_001042749.1	902	Gaa/Taa																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41245236	41245237	+	missense_variant	Missense_Mutation	DNP	AA	AA	GG			P-0013537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	71	609	0	ENST00000357654.3:c.2311_2312delinsCC	p.Leu771Pro	p.L771P	ENST00000357654	NM_007294.3	771	TTg/CCg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112157615	112157615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	28	238	0	ENST00000257430.4:c.1335G>T	p.Gln445His	p.Q445H	ENST00000257430	NM_000038.5	445	caG/caT																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061202	38061203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGGC			P-0003741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	40	165	0	ENST00000250448.2:c.782_786dup	p.Gln263AlafsTer60	p.Q263Afs*60	ENST00000250448	NM_004496.3	262	-/GCCGC																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	456	609	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	423	718	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112017578	112017578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	392	1028	0	ENST00000368678.4:c.935C>T	p.Ala312Val	p.A312V	ENST00000368678		312	gCg/gTg																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	286	615	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139402460	139402460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	332	781	2	ENST00000277541.6:c.3457C>T	p.Pro1153Ser	p.P1153S	ENST00000277541	NM_017617.3	1153	Ccc/Tcc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8097635	8097635	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	105	355	0	ENST00000346208.3:c.17A>G	p.Asp6Gly	p.D6G	ENST00000346208		6	gAc/gGc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46211574	46211574	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	300	723	0	ENST00000334344.6:c.540C>A	p.Cys180Ter	p.C180*	ENST00000334344	NM_152641.2	180	tgC/tgA																																												NEWRECORD																																		
U2AF1	0	MSKCC	GRCh37	21	44513292	44513292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	333	599	0	ENST00000291552.4:c.643G>A	p.Gly215Ser	p.G215S	ENST00000291552	NM_006758.2	215	Ggt/Agt																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244679	46244680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGTAGT			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	348	818	0	ENST00000334344.6:c.2775_2781dup	p.Ile928ArgfsTer25	p.I928Rfs*25	ENST00000334344	NM_152641.2	925	agc/aGCGTAGTgc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175940	112175943	+	frameshift_variant	Frame_Shift_Del	DEL	AGAA	AGAA	-			P-0013055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	141	357	0	ENST00000257430.4:c.4652_4655del	p.Lys1551ArgfsTer13	p.K1551Rfs*13	ENST00000257430	NM_000038.5	1550	gAGAAa/ga																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	127	417	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0006836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	51	418	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49412958	49412958	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	66	558	0	ENST00000418115.1:c.65T>G	p.Leu22Arg	p.L22R	ENST00000418115	NM_001664.2	22	cTc/cGc																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81336625	81336625	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	30	420	1	ENST00000222390.5:c.1597C>T	p.Arg533Ter	p.R533*	ENST00000222390	NM_000601.4	533	Cga/Tga																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151843813	151843813	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	31	336	1	ENST00000262189.6:c.13902G>A	p.Trp4634Ter	p.W4634*	ENST00000262189	NM_170606.2	4634	tgG/tgA																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533026	63533027	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCAC			P-0006836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	120	527	0	ENST00000307078.5:c.1863_1867dup	p.Met623SerfsTer68	p.M623Sfs*68	ENST00000307078	NM_004655.3	623	atg/aGTGGAtg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	24	460	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65307160	65307160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	132	365	0	ENST00000342505.4:c.2528G>T	p.Arg843Ile	p.R843I	ENST00000342505	NM_002227.2	843	aGa/aTa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178928225	178928225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	55	259	0	ENST00000263967.3:c.1411C>G	p.Pro471Ala	p.P471A	ENST00000263967	NM_006218.2	471	Cca/Gca																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153258986	153258986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	110	364	0	ENST00000281708.4:c.829C>G	p.Gln277Glu	p.Q277E	ENST00000281708	NM_033632.3	277	Caa/Gaa																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2223271	2223271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	166	319	0	ENST00000326181.6:c.883G>T	p.Asp295Tyr	p.D295Y	ENST00000326181	NM_032271.2	295	Gat/Tat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579565	7579566	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	102	288	0	ENST00000269305.4:c.121dup	p.Asp41GlyfsTer2	p.D41Gfs*2	ENST00000269305	NM_001126112.2	41	gat/gGat																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	53	536	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115115410	115115411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	103	678	0	ENST00000257566.3:c.915dup	p.Thr306HisfsTer21	p.T306Hfs*21	ENST00000257566	NM_016569.3	305	-/C																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68844161	68844161	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	107	740	0	ENST00000261769.5:c.749T>A	p.Ile250Asn	p.I250N	ENST00000261769	NM_004360.3	250	aTc/aAc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831304	72831313	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCTGCTGC	CTCCTGCTGC	-			P-0014711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			212	50	397	0	ENST00000268489.5:c.5268_5277del	p.Gln1757CysfsTer7	p.Q1757Cfs*7	ENST00000268489	NM_006885.3	1756	ctGCAGCAGGAG/ct																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11984669	11984670	+	splice_region_variant,intron_variant	Splice_Region	DEL	AC	AC	-			P-0014711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	58	399	0	ENST00000353533.5:c.219-3_219-2del		p.X73_splice	ENST00000353533	NM_003010.3	73																																													NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56492851	56492851	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014711-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	68	460	0	ENST00000407977.2:c.88C>G	p.Leu30Val	p.L30V	ENST00000407977		30	Ctg/Gtg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0014820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	39	711	1	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126																																													NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89833629	89833629	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			208	66	277	0	ENST00000389301.3:c.2521A>G	p.Ile841Val	p.I841V	ENST00000389301	NM_000135.2	841	Att/Gtt																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38991074	38991074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			205	163	409	0	ENST00000357387.3:c.560G>A	p.Cys187Tyr	p.C187Y	ENST00000357387	NM_152756.3	187	tGc/tAc																																												NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	152132814	152132815	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014820-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	123	602	0	ENST00000262189.6:c.57dup	p.Glu20ArgfsTer39	p.E20Rfs*39	ENST00000262189	NM_170606.2	19	-/C																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	392	761	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	165	578	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152332875	152332875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	97	387	1	ENST00000206249.3:c.1181G>A	p.Arg394His	p.R394H	ENST00000206249	NM_000125.3	394	cGc/cAc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56493736	56493738	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0014898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1660	301	669	0	ENST00000267101.3:c.3057_3059del	p.Glu1019del	p.E1019del	ENST00000267101	NM_001982.3	1018	GAG/-																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539886	187539887	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0014898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	195	425	0	ENST00000441802.2:c.7853_7854insAT	p.Leu2619PhefsTer25	p.L2619Ffs*25	ENST00000441802	NM_005245.3	2618	gtt/gtATt																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	37034007	37034007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014898-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	112	381	0	ENST00000358127.4:c.22C>T	p.Pro8Ser	p.P8S	ENST00000358127	NM_001280556.1	8	Ccg/Tcg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	67	240	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0004426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	74	153	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0004426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	90	222	1	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860143	151860143	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	129	379	0	ENST00000262189.6:c.10519C>T	p.Arg3507Ter	p.R3507*	ENST00000262189	NM_170606.2	3507	Cga/Tga																																												NEWRECORD																																		
SDHD	0	MSKCC	GRCh37	11	111959662	111959662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	125	194	0	ENST00000375549.3:c.241C>T	p.Pro81Ser	p.P81S	ENST00000375549	NM_003002.3	81	Ccg/Tcg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44879871	44879871	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	20	305	0	ENST00000377967.4:c.460C>T	p.Gln154Ter	p.Q154*	ENST00000377967	NM_021140.2	154	Cag/Tag																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151949751	151949752	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0004426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	142	467	0	ENST00000262189.6:c.1347_1348dup	p.His450ArgfsTer6	p.H450Rfs*6	ENST00000262189	NM_170606.2	450	cac/cGCac																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	248	462	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	425	415	0	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	598	505	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138196045	138196045	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	224	422	0	ENST00000237289.4:c.359T>G	p.Leu120Trp	p.L120W	ENST00000237289	NM_001270507.1	120	tTg/tGg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175817	112175826	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGCCTCGA	TGAGCCTCGA	-			P-0009645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	310	399	0	ENST00000257430.4:c.4532_4541del	p.Leu1511HisfsTer9	p.L1511Hfs*9	ENST00000257430	NM_000038.5	1509	cTGAGCCTCGAt/ct																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48573604	48573605	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	210	439	0	ENST00000342988.3:c.191dup	p.Asn64LysfsTer6	p.N64Kfs*6	ENST00000342988	NM_005359.5	63	aca/acAa																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	222	187	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72058592	72058592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	802	616	1	ENST00000357731.5:c.848C>A	p.Thr283Asn	p.T283N	ENST00000357731	NM_173808.2	283	aCt/aAt																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120529604	120529604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	465	343	1	ENST00000256646.2:c.853C>A	p.Arg285Ser	p.R285S	ENST00000256646	NM_024408.3	285	Cgc/Agc																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155874285	155874285	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	313	253	0	ENST00000368323.3:c.246T>G	p.Phe82Leu	p.F82L	ENST00000368323	NM_006912.5	82	ttT/ttG																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	176055026	176055026	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C	rs201597739		P-0009458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	232	360	0	ENST00000367669.3:c.1027A>G	p.Thr343Ala	p.T343A	ENST00000367669	NM_022457.5	343	Aca/Gca																																												NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134670859	134670859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	27	96	0	ENST00000398015.3:c.770C>A	p.Pro257His	p.P257H	ENST00000398015	NM_004441.4	257	cCt/cAt																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50367325	50367325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	70	163	1	ENST00000331340.3:c.132G>T	p.Gln44His	p.Q44H	ENST00000331340	NM_006060.4	44	caG/caT																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41133712	41133712	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	834	645	0	ENST00000379561.5:c.1916A>G	p.Gln639Arg	p.Q639R	ENST00000379561	NM_002015.3	639	cAa/cGa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42035052	42035052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	916	664	1	ENST00000219905.7:c.4894G>A	p.Ala1632Thr	p.A1632T	ENST00000219905	NM_001164273.1	1632	Gcc/Acc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2220180	2220180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	280	414	0	ENST00000398665.3:c.2765C>T	p.Ala922Val	p.A922V	ENST00000398665	NM_032482.2	922	gCc/gTc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48937072	48937073	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	318	308	0	ENST00000267163.4:c.840_841insT	p.His281SerfsTer2	p.H281Sfs*2	ENST00000267163	NM_000321.2	280	-/T																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010979-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			609	249	591	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010979-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			589	470	643	1	ENST00000292408.4:c.1648G>T	p.Val550Leu	p.V550L	ENST00000292408	NM_213647.1	550	Gtg/Ttg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112315	115112316	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010979-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			95	39	86	0	ENST00000257566.3:c.1424dup	p.Lys476GlnfsTer216	p.K476Qfs*216	ENST00000257566	NM_016569.3	475	ggc/ggGc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68863660	68863661	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCTGCCAAT			P-0010979-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			380	207	538	1	ENST00000261769.5:c.2403_2412dup	p.Asp805CysfsTer5	p.D805Cfs*5	ENST00000261769	NM_004360.3	800	cgc/cgCCCTGCCAATc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30691892	30691892	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs146497045		P-0010979-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			494	200	450	0	ENST00000359013.4:c.469A>G	p.Thr157Ala	p.T157A	ENST00000359013	NM_001024847.2	157	Act/Gct																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47677802	47677802	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010979-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			401	296	671	1	ENST00000347630.2:c.1063T>C	p.Ser355Pro	p.S355P	ENST00000347630	NM_001007230.1	355	Tct/Cct																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45372090	45372090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010979-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			694	313	615	0	ENST00000262160.6:c.1079C>T	p.Pro360Leu	p.P360L	ENST00000262160	NM_005901.5	360	cCc/cTc																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123224555	123224555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010979-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	436	1036	0	ENST00000218089.9:c.3408T>A	p.Asp1136Glu	p.D1136E	ENST00000218089	NM_001042749.1	1136	gaT/gaA																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249964	110250015	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCTCAGCGACGCCTTCAGCACGAACTTGCCCATCAGCCCGCCACCTGGC	GGCGCTCAGCGACGCCTTCAGCACGAACTTGCCCATCAGCCCGCCACCTGGC	-			P-0010979-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			225	24	250	0	ENST00000374672.4:c.660_711del	p.Pro221LeufsTer88	p.P221Lfs*88	ENST00000374672	NM_004235.4	220	ccGCCAGGTGGCGGGCTGATGGGCAAGTTCGTGCTGAAGGCGTCGCTGAGCGCC/cc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29552143	29552144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010979-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			446	315	729	0	ENST00000358273.4:c.1882dup	p.Tyr628LeufsTer6	p.Y628Lfs*6	ENST00000358273	NM_001042492.2	626	ctt/cTtt																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458435	120458436	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010979-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			410	160	347	0	ENST00000256646.2:c.6909dupC	p.Ile2304HisfsTer9	p.I2304Hfs*9	ENST00000256646	NM_024408.3	2303	-/C																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49039233	49039234	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0010979-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			424	281	675	0	ENST00000267163.4:c.2312_2313del	p.Tyr771CysfsTer23	p.Y771Cfs*23	ENST00000267163	NM_000321.2	771	TAt/t																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1101	238	505	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			830	412	464	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151884400	151884400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1257	259	543	0	ENST00000262189.6:c.4955C>A	p.Ala1652Asp	p.A1652D	ENST00000262189	NM_170606.2	1652	gCc/gAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174884	112174885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	421	485	3	ENST00000257430.4:c.3596dup	p.Ser1200GlufsTer8	p.S1200Efs*8	ENST00000257430	NM_000038.5	1198	tca/tcAa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	562	395	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	316	490	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg																																												NEWRECORD																																		
RRAS2	0	MSKCC	GRCh37	11	14380346	14380346	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	329	508	1	ENST00000256196.4:c.71G>T	p.Gly24Val	p.G24V	ENST00000256196		24	gGc/gTc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32953526	32953526	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	38	567	1	ENST00000380152.3:c.8827C>T	p.Gln2943Ter	p.Q2943*	ENST00000380152		2943	Cag/Tag																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95562779	95562795	+	frameshift_variant	Frame_Shift_Del	DEL	GGCATACTACCTAAGGA	GGCATACTACCTAAGGA	-			P-0015076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	43	314	0	ENST00000343455.3:c.4462_4478del	p.Ser1488IlefsTer6	p.S1488Ifs*6	ENST00000343455	NM_177438.2	1488	TCCTTAGGTAGTATGCCa/a																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59821901	59821901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	124	589	0	ENST00000259008.2:c.2149C>G	p.Leu717Val	p.L717V	ENST00000259008	NM_032043.2	717	Ctg/Gtg																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59821921	59821921	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	117	489	0	ENST00000259008.2:c.2129C>G	p.Ser710Cys	p.S710C	ENST00000259008	NM_032043.2	710	tCt/tGt																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41743894	41743894	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	224	787	0	ENST00000301178.4:c.829G>C	p.Asp277His	p.D277H	ENST00000301178	NM_021913.4	277	Gac/Cac																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128200773	128200774	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTCTGGCGGC			P-0015076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	333	462	0	ENST00000341105.2:c.1021_1031dup	p.Ala345ProfsTer46	p.A345Pfs*46	ENST00000341105	NM_032638.4	344	aga/agGCCGCCAGAAGa																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372470	55372470	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015076-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	577	994	0	ENST00000297316.4:c.1160A>G	p.Asn387Ser	p.N387S	ENST00000297316	NM_022454.3	387	aAt/aGt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420288	49420288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	22	472	1	ENST00000301067.7:c.15461G>A	p.Arg5154Gln	p.R5154Q	ENST00000301067	NM_003482.3	5154	cGg/cAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	80	404	1	ENST00000269305.4:c.481G>T	p.Ala161Ser	p.A161S	ENST00000269305	NM_001126112.2	161	Gcc/Tcc																																												NEWRECORD																																		
CDK12	51755	MSKCC	GRCh37	17	37687471	37687472	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs760014508		P-0005902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	13	244	0	ENST00000447079.4:c.4382dup	p.Thr1463AsnfsTer50	p.T1463Nfs*50	ENST00000447079	NM_015083.1	1459	tgg/tGgg																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	11	381	0	ENST00000349496.5:c.97T>G	p.Ser33Ala	p.S33A	ENST00000349496	NM_001904.3	33	Tct/Gct																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061250	38061250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	178	485	0	ENST00000250448.2:c.739C>T	p.His247Tyr	p.H247Y	ENST00000250448	NM_004496.3	247	Cac/Tac																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	192	465	0	ENST00000263967.3:c.344G>C	p.Arg115Pro	p.R115P	ENST00000263967	NM_006218.2	115	cGa/cCa																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACC			P-0008487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	134	247	0	ENST00000275493.2:c.2312_2314dup	p.Asn771_Pro772insHis	p.N771_P772insH	ENST00000275493	NM_005228.3	771	aac/aACCac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578098	7578176	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGAC	CCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGAC	-			P-0008487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	142	168	0	ENST00000269305.4:c.672+1_672+79del		p.X224_splice	ENST00000269305	NM_001126112.2	224																																													NEWRECORD																																		
SUFU	51684	MSKCC	GRCh37	10	104263973	104263974	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs765123636		P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	66	172	2	ENST00000369902.3:c.71dup	p.Ala25GlyfsTer23	p.A25Gfs*23	ENST00000369902	NM_016169.3	22	gcc/gCcc																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	191	352	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	333	462	1	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	232	285	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209116254	209116254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	204	323	0	ENST00000345146.2:c.22G>A	p.Gly8Ser	p.G8S	ENST00000345146	NM_005896.2	8	Ggt/Agt																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	172	379	2	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25523009	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	52	506	2	ENST00000264709.3:c.176delC	p.Pro59ArgfsTer13	p.P59Rfs*13	ENST00000264709	NM_175629.2	59	cCg/cg																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153251907	153251907	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	256	497	4	ENST00000281708.4:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000281708	NM_033632.3	367	Cga/Tga																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	36882082	36882082	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	143	461	0	ENST00000358127.4:c.931A>G	p.Thr311Ala	p.T311A	ENST00000358127	NM_001280556.1	311	Acc/Gcc																																												NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	168	435	1	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	254	627	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9543605	9543605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	181	450	1	ENST00000353224.5:c.1549G>A	p.Asp517Asn	p.D517N	ENST00000353224	NM_177990.2	517	Gat/Aat																																												NEWRECORD																																		
KMT2C	58508	MSKCC	GRCh37	7	151859859	151859859	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	146	412	2	ENST00000262189.6:c.10803del	p.Lys3604ArgfsTer26	p.K3604Rfs*26	ENST00000262189	NM_170606.2	3601	aaA/aa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991721	72991721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	183	353	2	ENST00000268489.5:c.2324C>T	p.Ala775Val	p.A775V	ENST00000268489	NM_006885.3	775	gCg/gTg																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11313909	11313909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	173	361	0	ENST00000361445.4:c.827G>A	p.Ser276Asn	p.S276N	ENST00000361445	NM_004958.3	276	aGc/aAc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16261338	16261338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	134	336	0	ENST00000375759.3:c.8603C>T	p.Ser2868Phe	p.S2868F	ENST00000375759	NM_015001.2	2868	tCc/tTc																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204507392	204507392	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1331	109	526	0	ENST00000367182.3:c.467C>A	p.Pro156His	p.P156H	ENST00000367182	NM_001278516.1	156	cCc/cAc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30143441	30143441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	43	143	0	ENST00000389048.3:c.85G>A	p.Ala29Thr	p.A29T	ENST00000389048	NM_004304.4	29	Gcg/Acg																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220437262	220437262	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	199	586	0	ENST00000243786.2:c.166A>G	p.Arg56Gly	p.R56G	ENST00000243786	NM_002191.3	56	Agg/Ggg																																												NEWRECORD																																		
EIF4E	0	MSKCC	GRCh37	4	99823069	99823069	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	155	319	0	ENST00000280892.6:c.143T>G	p.Val48Gly	p.V48G	ENST00000280892	NM_001130678.1	48	gTt/gGt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187627773	187627773	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200050180		P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	216	466	0	ENST00000441802.2:c.3209G>A	p.Arg1070Gln	p.R1070Q	ENST00000441802	NM_005245.3	1070	cGa/cAa																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86667976	86667976	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	212	473	0	ENST00000274376.6:c.1740A>C	p.Lys580Asn	p.K580N	ENST00000274376	NM_002890.2	580	aaA/aaC																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173767	112173767	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	173	365	0	ENST00000257430.4:c.2476T>A	p.Leu826Met	p.L826M	ENST00000257430	NM_000038.5	826	Ttg/Atg																																												NEWRECORD																																		
PIM1	0	MSKCC	GRCh37	6	37139010	37139010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	167	434	1	ENST00000373509.5:c.350T>C	p.Val117Ala	p.V117A	ENST00000373509	NM_002648.3	117	gTc/gCc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8517873	8517873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	199	403	0	ENST00000356435.5:c.1518C>A	p.Asp506Glu	p.D506E	ENST00000356435		506	gaC/gaA																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133761015	133761015	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	221	576	0	ENST00000318560.5:c.3338A>G	p.Asp1113Gly	p.D1113G	ENST00000318560	NM_005157.4	1113	gAc/gGc																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94201025	94201025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	193	443	2	ENST00000323929.3:c.1052G>A	p.Arg351His	p.R351H	ENST00000323929	NM_005591.3	351	cGt/cAt																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88576213	88576213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	141	378	0	ENST00000360948.2:c.1460G>A	p.Gly487Asp	p.G487D	ENST00000360948	NM_001012338.2	487	gGc/gAc																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99459927	99459927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	220	452	0	ENST00000268035.6:c.2023G>A	p.Asp675Asn	p.D675N	ENST00000268035	NM_000875.3	675	Gac/Aac																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67116168	67116168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	331	544	1	ENST00000412916.2:c.452G>A	p.Arg151His	p.R151H	ENST00000412916		151	cGc/cAc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828653	72828653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	353	709	0	ENST00000268489.5:c.7928G>A	p.Arg2643His	p.R2643H	ENST00000268489	NM_006885.3	2643	cGt/cAt																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15968309	15968309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	229	544	0	ENST00000268712.3:c.4976C>A	p.Pro1659His	p.P1659H	ENST00000268712	NM_006311.3	1659	cCt/cAt																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17124854	17124854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	169	402	0	ENST00000285071.4:c.868G>A	p.Ala290Thr	p.A290T	ENST00000285071	NM_144997.5	290	Gct/Act																																												NEWRECORD																																		
RAD51C	0	MSKCC	GRCh37	17	56811555	56811555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	294	444	0	ENST00000337432.4:c.1103G>A	p.Arg368Gln	p.R368Q	ENST00000337432	NM_058216.2	368	cGg/cAg																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	736907	736907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	128	479	0	ENST00000314574.4:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000314574	NM_005433.3	398	Cgg/Tgg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7117225	7117225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	82	448	0	ENST00000302850.5:c.3991C>T	p.Arg1331Cys	p.R1331C	ENST00000302850	NM_000208.2	1331	Cgt/Tgt																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40743929	40743929	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	201	486	1	ENST00000392038.2:c.778G>T	p.Val260Phe	p.V260F	ENST00000392038	NM_001626.4	260	Gtc/Ttc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40739003	40739003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	115	400	0	ENST00000373198.4:c.3281C>T	p.Pro1094Leu	p.P1094L	ENST00000373198	NM_133170.3	1094	cCg/cTg																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24129428	24129428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	167	413	0	ENST00000263121.7:c.72G>T	p.Glu24Asp	p.E24D	ENST00000263121	NM_003073.3	24	gaG/gaT																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41572460	41572460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	208	522	0	ENST00000263253.7:c.4989G>T	p.Gln1663His	p.Q1663H	ENST00000263253	NM_001429.3	1663	caG/caT																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47032551	47032551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	182	541	1	ENST00000329236.7:c.226G>A	p.Gly76Ser	p.G76S	ENST00000329236	NM_001204466.1	76	Ggc/Agc																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90958479	90958480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	136	285	0	ENST00000265433.3:c.1958dup	p.Leu654AlafsTer5	p.L654Afs*5	ENST00000265433	NM_002485.4	653	aag/aaAg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115114271	115114272	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	148	312	0	ENST00000257566.3:c.945dup	p.Gln316ThrfsTer11	p.Q316Tfs*11	ENST00000257566	NM_016569.3	315	-/A																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627501	37627501	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	239	528	0	ENST00000447079.4:c.1421delA	p.Asn474IlefsTer8	p.N474Ifs*8	ENST00000447079	NM_015083.1	472	gtA/gt																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47161939	47161939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	132	321	3	ENST00000409792.3:c.4187del	p.Asn1396MetfsTer16	p.N1396Mfs*16	ENST00000409792	NM_014159.6	1396	aAt/at																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221239	1221240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	231	499	0	ENST00000326873.7:c.762_763insA	p.Phe255IlefsTer11	p.F255Ifs*11	ENST00000326873	NM_000455.4	254	-/A																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227663299	227663301	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	118	296	0	ENST00000305123.5:c.154_156delAAG	p.Lys52del	p.K52del	ENST00000305123	NM_005544.2	52	AAG/-																																												NEWRECORD																																		
CD79A	0	MSKCC	GRCh37	19	42383118	42383118	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	271	558	5	ENST00000221972.3:c.142del	p.Glu48LysfsTer44	p.E48Kfs*44	ENST00000221972	NM_021601.3	46	ctG/ct																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103506173	103506173	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	193	442	0	ENST00000355739.4:c.334del	p.Thr112HisfsTer3	p.T112Hfs*3	ENST00000355739	NM_000123.3	111	Aaa/aa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	109	257	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
DICER1	23405	MSKCC	GRCh37	14	95560476	95560476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	87	125	0	ENST00000343455.3:c.5113G>A	p.Glu1705Lys	p.E1705K	ENST00000343455	NM_177438.2	1705	Gaa/Aaa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29548888	29548888	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs147594815		P-0007425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	135	270	0	ENST00000358273.4:c.1662G>T	p.Gln554His	p.Q554H	ENST00000358273	NM_001042492.2	554	caG/caT																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627560	37627560	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	355	554	0	ENST00000447079.4:c.1475T>G	p.Val492Gly	p.V492G	ENST00000447079	NM_015083.1	492	gTt/gGt																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95569728	95569729	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0007425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	232	361	0	ENST00000343455.3:c.4004dup	p.Tyr1335Ter	p.Y1335*	ENST00000343455	NM_177438.2	1335	tac/taAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112116500	112116501	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	51	440	0	ENST00000257430.4:c.546dup	p.Asp183ArgfsTer10	p.D183Rfs*10	ENST00000257430	NM_000038.5	182	aca/acAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175180	112175181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0007929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	43	250	0	ENST00000257430.4:c.3890_3891dup	p.Ser1298IlefsTer8	p.S1298Ifs*8	ENST00000257430	NM_000038.5	1297	gat/gATat																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578464	7578476	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	rs876659215		P-0007929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	127	455	1	ENST00000269305.4:c.454_466del	p.Pro152AlafsTer14	p.P152Afs*14	ENST00000269305	NM_001126112.2	152	CCGCCCGGCACCCgc/gc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	221	372	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	80	210	0	ENST00000304494.5:c.242C>G	p.Pro81Arg	p.P81R	ENST00000304494	NM_000077.4	81	cCc/cGc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	80	210	0	ENST00000304494.5:c.242C>G	p.Pro81Arg	p.P81R	ENST00000304494	NM_000077.4	81	cCc/cGc																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102869448	102869448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	52	344	0	ENST00000307046.8:c.193G>A	p.Val65Met	p.V65M	ENST00000307046	NM_001111285.1	65	Gtg/Atg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576903	7576904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0008838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	138	378	0	ENST00000269305.4:c.941_942dup	p.Ser315ProfsTer31	p.S315Pfs*31	ENST00000269305	NM_001126112.2	314	-/CC																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28980020	28980021	+	inframe_insertion	In_Frame_Ins	INS	-	-	AAA			P-0006684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	160	275	1	ENST00000282397.4:c.1445_1447dup	p.Phe482dup	p.F482dup	ENST00000282397	NM_002019.4	482	tgt/tTTTgt																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44918257	44918257	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0000920-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			124	118	204	0	ENST00000377967.4:c.882T>G	p.Tyr294Ter	p.Y294*	ENST00000377967	NM_021140.2	294	taT/taG																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579335	7579336	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0000920-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	72	164	0	ENST00000269305.4:c.350_351dup	p.Thr118GlyfsTer6	p.T118Gfs*6	ENST00000269305	NM_001126112.2	117	-/GG																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29663687	29663709	+	frameshift_variant	Frame_Shift_Del	DEL	CATGCTTATCTCCAACTCCTACT	CATGCTTATCTCCAACTCCTACT	-			P-0000920-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	48	354	0	ENST00000358273.4:c.6182_6204del	p.Thr2061IlefsTer9	p.T2061Ifs*9	ENST00000358273	NM_001042492.2	2061	aCATGCTTATCTCCAACTCCTACT/a																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0004112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	161	246	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937602	76937603	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	287	185	0	ENST00000373344.5:c.3145dupA	p.Ile1049AsnfsTer4	p.I1049Nfs*4	ENST00000373344	NM_000489.3	1049	ata/aAta																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	243	509	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1330	59	504	2	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	101	269	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118344185	118344186	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs782297546		P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	190	491	1	ENST00000534358.1:c.2318dup	p.Ser774ValfsTer12	p.S774Vfs*12	ENST00000534358	NM_005933.3	771	acc/aCcc																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31022403	31022425	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACTGCCATAGAGAGGCGGC	CACCACTGCCATAGAGAGGCGGC	-			P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	99	274	0	ENST00000375687.4:c.1900_1922delAGAGAGGCGGCCACCACTGCCAT	p.Glu635ArgfsTer15	p.E635Rfs*15	ENST00000375687	NM_015338.5	630	CACCACTGCCATAGAGAGGCGGCc/c																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30732957	30732957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	425	402	0	ENST00000359013.4:c.1645G>A	p.Asp549Asn	p.D549N	ENST00000359013	NM_001024847.2	549	Gac/Aac																																												NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69633625	69633625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	35	72	0	ENST00000334134.2:c.77G>A	p.Arg26Gln	p.R26Q	ENST00000334134	NM_005247.2	26	cGg/cAg																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114905821	114905822	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1300	327	711	0	ENST00000543371.1:c.842_843del	p.Pro281HisfsTer46	p.P281Hfs*46	ENST00000543371	NM_001198531.1	280	taCCcc/tacc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176009	112176009	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	187	350	0	ENST00000257430.4:c.4720delA	p.Ile1574TyrfsTer2	p.I1574Yfs*2	ENST00000257430	NM_000038.5	1573	gAa/ga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	441	549	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0007039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	63	505	4	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	280	472	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
SH2D1A	0	MSKCC	GRCh37	X	123504041	123504041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	68	456	1	ENST00000371139.4:c.217C>T	p.His73Tyr	p.H73Y	ENST00000371139	NM_001114937.2	73	Cat/Tat																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175747	112175748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ATACTTT			P-0007039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	212	388	0	ENST00000257430.4:c.4459_4465dup	p.Leu1489TyrfsTer27	p.L1489Yfs*27	ENST00000257430	NM_000038.5	1486	gat/gATACTTTat																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	201	806	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	101	852	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	139	563	1	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	71	676	0	ENST00000361445.4:c.5930C>T	p.Thr1977Ile	p.T1977I	ENST00000361445	NM_004958.3	1977	aCa/aTa																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37081782	37081782	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	106	704	0	ENST00000231790.2:c.1664T>G	p.Leu555Arg	p.L555R	ENST00000231790	NM_000249.3	555	cTt/cGt																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55948135	55948135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	85	961	0	ENST00000263923.4:c.3836C>A	p.Ser1279Tyr	p.S1279Y	ENST00000263923	NM_002253.2	1279	tCt/tAt																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457295	67457295	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	109	866	1	ENST00000327367.4:c.269G>T	p.Arg90Leu	p.R90L	ENST00000327367	NM_005902.3	90	cGc/cTc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15978899	15978899	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	137	1034	0	ENST00000268712.3:c.3619A>C	p.Lys1207Gln	p.K1207Q	ENST00000268712	NM_006311.3	1207	Aaa/Caa																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2216631	2216631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	44	730	0	ENST00000398665.3:c.2275C>T	p.Arg759Cys	p.R759C	ENST00000398665	NM_032482.2	759	Cgc/Tgc																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9560878	9560878	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	117	1074	0	ENST00000353224.5:c.904A>C	p.Ser302Arg	p.S302R	ENST00000353224	NM_177990.2	302	Agt/Cgt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175523	112175524	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGAA			P-0007923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	73	677	0	ENST00000257430.4:c.4236_4240dup	p.Val1414GlufsTer3	p.V1414Efs*3	ENST00000257430	NM_000038.5	1411	agt/agTGGAAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	21	649	1	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7117243	7117243	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	27	791	1	ENST00000302850.5:c.3973G>T	p.Glu1325Ter	p.E1325*	ENST00000302850	NM_000208.2	1325	Gag/Tag																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252856	36252856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	33	404	0	ENST00000300305.3:c.506G>A	p.Arg169Lys	p.R169K	ENST00000300305		169	aGa/aAa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123215276	123215276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	22	840	0	ENST00000218089.9:c.2822C>A	p.Ser941Ter	p.S941*	ENST00000218089	NM_001042749.1	941	tCa/tAa																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150001331	150001331	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	48	786	0	ENST00000253339.5:c.2273del	p.Ala758ValfsTer8	p.A758Vfs*8	ENST00000253339		758	gCt/gt																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252970	36252971	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	35	418	0	ENST00000300305.3:c.391dup	p.Thr131AsnfsTer7	p.T131Nfs*7	ENST00000300305		131	act/aAct																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	62	588	1	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105709	27105709	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	44	540	1	ENST00000324856.7:c.5320G>T	p.Glu1774Ter	p.E1774*	ENST00000324856	NM_006015.4	1774	Gaa/Taa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431363	49431386	+	inframe_deletion	In_Frame_Del	DEL	TCCTTCTTCTCATGCTCCAACAGG	TCCTTCTTCTCATGCTCCAACAGG	-			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	54	334	0	ENST00000301067.7:c.9753_9776del	p.Asp3251_Lys3258del	p.D3251_K3258del	ENST00000301067	NM_003482.3	3251	gaCCTGTTGGAGCATGAGAAGAAGGAg/gag																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28608255	28608255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	55	749	0	ENST00000241453.7:c.1801C>A	p.Leu601Ile	p.L601I	ENST00000241453	NM_004119.2	601	Ctc/Atc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29001320	29001320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	48	576	0	ENST00000282397.4:c.1412G>T	p.Cys471Phe	p.C471F	ENST00000282397	NM_002019.4	471	tGt/tTt																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88476242	88476243	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	52	606	0	ENST00000360948.2:c.1889_1889+1delinsTT		p.X630_splice	ENST00000360948	NM_001012338.2	630																																													NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14041474	14041474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	37	367	2	ENST00000311895.7:c.2021G>T	p.Gly674Val	p.G674V	ENST00000311895	NM_005236.2	674	gGc/gTc																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12028622	12028622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	68	567	0	ENST00000353533.5:c.825A>G	p.Ile275Met	p.I275M	ENST00000353533	NM_003010.3	275	atA/atG																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29679336	29679336	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	57	644	1	ENST00000358273.4:c.7519A>T	p.Thr2507Ser	p.T2507S	ENST00000358273	NM_001042492.2	2507	Acc/Tcc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207031	1207031	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	70	460	0	ENST00000326873.7:c.119G>T	p.Arg40Leu	p.R40L	ENST00000326873	NM_000455.4	40	cGc/cTc																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17946770	17946770	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	75	647	0	ENST00000458235.1:c.1877A>T	p.Gln626Leu	p.Q626L	ENST00000458235	NM_000215.3	626	cAg/cTg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30143164	30143164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	52	479	0	ENST00000389048.3:c.362G>A	p.Arg121Gln	p.R121Q	ENST00000389048	NM_004304.4	121	cGg/cAg																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198273179	198273179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	72	817	0	ENST00000335508.6:c.1031G>T	p.Ser344Ile	p.S344I	ENST00000335508	NM_012433.2	344	aGt/aTt																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55955946	55955946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	44	635	0	ENST00000263923.4:c.3216G>T	p.Met1072Ile	p.M1072I	ENST00000263923	NM_002253.2	1072	atG/atT																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1282703	1282703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	189	530	0	ENST00000310581.5:c.1610G>A	p.Arg537His	p.R537H	ENST00000310581	NM_198253.2	537	cGt/cAt																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294669	1294669	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	17	133	0	ENST00000310581.5:c.332C>T	p.Pro111Leu	p.P111L	ENST00000310581	NM_198253.2	111	cCc/cTc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174995	112174995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	26	385	0	ENST00000257430.4:c.3704C>T	p.Ser1235Phe	p.S1235F	ENST00000257430	NM_000038.5	1235	tCt/tTt																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100624986	100624987	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0014061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	45	662	0	ENST00000308731.7:c.390_391insA	p.Val131SerfsTer7	p.V131Sfs*7	ENST00000308731	NM_000061.2	130	-/A																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624293	89624293	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	104	161	0	ENST00000371953.3:c.67T>G	p.Leu23Val	p.L23V	ENST00000371953	NM_000314.4	23	Tta/Gta																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692887	89692887	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	79	133	0	ENST00000371953.3:c.371G>C	p.Cys124Ser	p.C124S	ENST00000371953	NM_000314.4	124	tGt/tCt																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	257	351	0	ENST00000250448.2:c.749C>T	p.Ser250Phe	p.S250F	ENST00000250448	NM_004496.3	250	tCc/tTc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68845682	68845682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	151	397	1	ENST00000261769.5:c.928G>T	p.Glu310Ter	p.E310*	ENST00000261769	NM_004360.3	310	Gag/Tag																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344075	118344076	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000104-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	125	262	0	ENST00000534358.1:c.2206dupA	p.Arg736LysfsTer7	p.R736Kfs*7	ENST00000534358	NM_005933.3	734	aga/agAa																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93979332	93979332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	75	617	0	ENST00000369303.4:c.1496C>T	p.Ser499Leu	p.S499L	ENST00000369303	NM_004440.3	499	tCa/tTa																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149983070	149983070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	62	478	0	ENST00000253339.5:c.3188G>T	p.Gly1063Val	p.G1063V	ENST00000253339		1063	gGa/gTa																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974787	21974787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	92	143	0	ENST00000304494.5:c.40G>A	p.Asp14Asn	p.D14N	ENST00000304494	NM_000077.4	14	Gac/Aac																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974787	21974787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	92	143	0	ENST00000304494.5:c.40G>A	p.Asp14Asn	p.D14N	ENST00000304494	NM_000077.4	14	Gac/Aac																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108141839	108141839	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	79	335	0	ENST00000278616.4:c.2887A>T	p.Met963Leu	p.M963L	ENST00000278616	NM_000051.3	963	Atg/Ttg																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57859574	57859574	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	277	551	0	ENST00000228682.2:c.628C>G	p.Pro210Ala	p.P210A	ENST00000228682	NM_005269.2	210	Ccc/Gcc																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110436876	110436876	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	262	168	0	ENST00000375856.3:c.1525G>C	p.Asp509His	p.D509H	ENST00000375856	NM_003749.2	509	Gac/Cac																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72984850	72984850	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	137	369	0	ENST00000268489.5:c.2734C>G	p.Pro912Ala	p.P912A	ENST00000268489	NM_006885.3	912	Ccc/Gcc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993146	72993146	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1198	173	685	0	ENST00000268489.5:c.899A>G	p.His300Arg	p.H300R	ENST00000268489	NM_006885.3	300	cAc/cGc																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39617655	39617655	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	40	327	0	ENST00000262039.4:c.1840-1G>C		p.X614_splice	ENST00000262039	NM_002647.2	614																																													NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30051637	30051637	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	292	343	0	ENST00000338641.4:c.571T>G	p.Trp191Gly	p.W191G	ENST00000338641	NM_000268.3	191	Tgg/Ggg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410775	63410775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	99	521	0	ENST00000330258.3:c.2392C>G	p.Gln798Glu	p.Q798E	ENST00000330258	NM_152424.3	798	Caa/Gaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579521	7579528	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CAGTGAAC	CAGTGAAC	-			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	158	286	0	ENST00000269305.4:c.159_166del	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgGTTCACTGaa/tgaa																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5069982	5069983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	62	426	0	ENST00000381652.3:c.1573dup	p.Thr525AsnfsTer19	p.T525Nfs*19	ENST00000381652	NM_004972.3	524	cca/ccAa																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	70	258	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15350576	15350578	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	44	154	0	ENST00000263377.2:c.3337_3339delGAG	p.Glu1113del	p.E1113del	ENST00000263377	NM_058243.2	1113	GAG/-																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112164646	112164646	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	35	135	0	ENST00000257430.4:c.1720G>T	p.Glu574Ter	p.E574*	ENST00000257430	NM_000038.5	574	Gaa/Taa																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	742923	742923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	81	376	0	ENST00000314574.4:c.1055C>T	p.Ser352Leu	p.S352L	ENST00000314574	NM_005433.3	352	tCa/tTa																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	742959	742959	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	98	453	0	ENST00000314574.4:c.1019C>G	p.Ser340Cys	p.S340C	ENST00000314574	NM_005433.3	340	tCt/tGt																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	742978	742978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	98	460	1	ENST00000314574.4:c.1000C>G	p.Pro334Ala	p.P334A	ENST00000314574	NM_005433.3	334	Cca/Gca																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	743014	743014	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	109	441	0	ENST00000314574.4:c.964C>G	p.Gln322Glu	p.Q322E	ENST00000314574	NM_005433.3	322	Cag/Gag																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	743066	743066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	123	418	0	ENST00000314574.4:c.912C>G	p.Ile304Met	p.I304M	ENST00000314574	NM_005433.3	304	atC/atG																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175970	112175970	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	22	163	0	ENST00000257430.4:c.4682delA	p.Lys1561ArgfsTer4	p.K1561Rfs*4	ENST00000257430	NM_000038.5	1560	gAa/ga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579706	7579707	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000714-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	180	427	0	ENST00000269305.4:c.89dup	p.Asn30LysfsTer13	p.N30Kfs*13	ENST00000269305	NM_001126112.2	30	aac/aaAc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	89	392	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29041183	29041183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	225	641	0	ENST00000282397.4:c.245G>T	p.Gly82Val	p.G82V	ENST00000282397	NM_002019.4	82	gGa/gTa																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2211752	2211752	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0005510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1475	338	938	0	ENST00000398665.3:c.1468T>C	p.Ser490Pro	p.S490P	ENST00000398665	NM_032482.2	490	Tcc/Ccc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610315	10610315	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	290	704	0	ENST00000171111.5:c.395T>G	p.Val132Gly	p.V132G	ENST00000171111	NM_203500.1	132	gTc/gGc																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54961468	54961468	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	135	272	1	ENST00000312783.6:c.164A>T	p.Gln55Leu	p.Q55L	ENST00000312783	NM_198436.1	55	cAg/cTg																																												NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1207064	1207065	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	267	710	0	ENST00000326873.7:c.157dup	p.Asp53GlyfsTer110	p.D53Gfs*110	ENST00000326873	NM_000455.4	51	atg/atGg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44923060	44923060	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0006525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	46	305	0	ENST00000377967.4:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000377967	NM_021140.2	641	Cag/Tag																																												NEWRECORD																																		
HIST1H3D	0	MSKCC	GRCh37	6	26197448	26197448	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	65	708	0	ENST00000356476.2:c.31T>C	p.Ser11Pro	p.S11P	ENST00000356476		11	Tcc/Ccc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139391222	139391222	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	37	365	0	ENST00000277541.6:c.6969C>G	p.Tyr2323Ter	p.Y2323*	ENST00000277541	NM_017617.3	2323	taC/taG																																												NEWRECORD																																		
NFKBIA	0	MSKCC	GRCh37	14	35873720	35873721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAGC			P-0006525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	50	520	0	ENST00000216797.5:c.130_131insGCTC	p.Gln44ArgfsTer43	p.Q44Rfs*43	ENST00000216797	NM_020529.2	44	cag/cGCTCag																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	72	424	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162724562	162724562	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1010	148	396	0	ENST00000367921.3:c.334A>C	p.Ile112Leu	p.I112L	ENST00000367921	NM_006182.2	112	Atc/Ctc																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243716170	243716170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			734	375	541	0	ENST00000263826.5:c.1024G>T	p.Gly342Trp	p.G342W	ENST00000263826	NM_005465.4	342	Ggg/Tgg																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198266512	198266512	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	312	344	0	ENST00000335508.6:c.2324G>T	p.Arg775Leu	p.R775L	ENST00000335508	NM_012433.2	775	cGa/cTa																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66231754	66231754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	71	403	1	ENST00000273854.3:c.1946C>A	p.Thr649Asn	p.T649N	ENST00000273854	NM_004439.5	649	aCt/aAt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152420003	152420003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	181	349	1	ENST00000206249.3:c.1690G>T	p.Asp564Tyr	p.D564Y	ENST00000206249	NM_000125.3	564	Gac/Tac																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9923450	9923450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	164	431	0	ENST00000330684.3:c.1837T>G	p.Phe613Val	p.F613V	ENST00000330684	NM_001134407.1	613	Ttc/Gtc																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39584505	39584505	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	79	228	1	ENST00000262039.4:c.1170G>T	p.Glu390Asp	p.E390D	ENST00000262039	NM_002647.2	390	gaG/gaT																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17937556	17937556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	111	562	0	ENST00000458235.1:c.3371C>T	p.Ser1124Leu	p.S1124L	ENST00000458235	NM_000215.3	1124	tCa/tTa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76939678	76939678	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	245	432	2	ENST00000373344.5:c.1070A>C	p.Lys357Thr	p.K357T	ENST00000373344	NM_000489.3	357	aAa/aCa																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	150	441	1	ENST00000326873.7:c.842dup	p.Leu282AlafsTer3	p.L282Afs*3	ENST00000326873	NM_000455.4	279	ggc/ggCc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			30	695	433	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15354254	15354254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			191	132	197	0	ENST00000263377.2:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000263377	NM_058243.2	876	Cga/Tga																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48923143	48923144	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	841	283	0	ENST00000267163.4:c.596dup	p.Leu199PhefsTer4	p.L199Ffs*4	ENST00000267163	NM_000321.2	197	-/T																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243736301	243736301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			877	224	362	1	ENST00000263826.5:c.746G>A	p.Arg249His	p.R249H	ENST00000263826	NM_005465.4	249	cGt/cAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			801	189	223	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																												NEWRECORD																																		
SDHD	0	MSKCC	GRCh37	11	111958593	111958593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	151	252	0	ENST00000375549.3:c.65G>A	p.Arg22Gln	p.R22Q	ENST00000375549	NM_003002.3	22	cGa/cAa																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28624277	28624277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1494	106	535	0	ENST00000241453.7:c.697G>A	p.Ala233Thr	p.A233T	ENST00000241453	NM_004119.2	233	Gcc/Acc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913143	32913143	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			896	71	243	0	ENST00000380152.3:c.4651C>T	p.Gln1551Ter	p.Q1551*	ENST00000380152		1551	Caa/Taa																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88423601	88423601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			759	94	397	0	ENST00000360948.2:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000360948	NM_001012338.2	745	cGg/cAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	185	305	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248430	59248431	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			724	104	258	0	ENST00000371222.2:c.312dup	p.Asp105ArgfsTer2	p.D105Rfs*2	ENST00000371222	NM_002228.3	104	-/A																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	64	127	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63554097	63554098	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001079-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1131	355	521	0	ENST00000307078.5:c.641dup	p.Leu215ThrfsTer16	p.L215Tfs*16	ENST00000307078	NM_004655.3	214	gga/ggGa																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881414	37881414	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	1110	393	0	ENST00000269571.5:c.2606T>G	p.Leu869Arg	p.L869R	ENST00000269571		869	cTg/cGg																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134184	41134184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	608	804	0	ENST00000379561.5:c.1444C>G	p.Pro482Ala	p.P482A	ENST00000379561	NM_002015.3	482	Cct/Gct																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68863681	68863682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0012836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	317	348	0	ENST00000261769.5:c.2421_2422dup	p.Gly808ValfsTer9	p.G808Vfs*9	ENST00000261769	NM_004360.3	807	att/atTGt																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	68	218	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	147	197	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	95	439	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70441157	70441157	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	129	513	1	ENST00000373644.4:c.4832delA	p.Asn1611ThrfsTer13	p.N1611Tfs*13	ENST00000373644	NM_030625.2	1609	gAa/ga																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519925		P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	210	482	0	ENST00000263967.3:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000263967	NM_006218.2	453	Gaa/Caa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29661866	29661866	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	84	433	0	ENST00000358273.4:c.5823G>C	p.Leu1941Phe	p.L1941F	ENST00000358273	NM_001042492.2	1941	ttG/ttC																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	217	796	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952138	178952138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	44	369	0	ENST00000263967.3:c.3193C>T	p.His1065Tyr	p.H1065Y	ENST00000263967	NM_006218.2	1065	Cat/Tat																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16264009	16264009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	154	819	1	ENST00000375759.3:c.10378C>T	p.Pro3460Ser	p.P3460S	ENST00000375759	NM_015001.2	3460	Cca/Tca																																												NEWRECORD																																		
HIST1H3I	0	MSKCC	GRCh37	6	27839850	27839850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	140	1346	3	ENST00000328488.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000328488	NM_003533.2	82	Gat/Aat																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056443	26056443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	27	263	0	ENST00000343677.2:c.214G>A	p.Asp72Asn	p.D72N	ENST00000343677	NM_005319.3	72	Gat/Aat																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831644	72831644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	79	1038	0	ENST00000268489.5:c.4937C>T	p.Ser1646Phe	p.S1646F	ENST00000268489	NM_006885.3	1646	tCc/tTc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16255841	16255841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	99	366	0	ENST00000375759.3:c.3106G>C	p.Glu1036Gln	p.E1036Q	ENST00000375759	NM_015001.2	1036	Gaa/Caa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258869	16258869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	147	672	0	ENST00000375759.3:c.6134G>A	p.Arg2045Lys	p.R2045K	ENST00000375759	NM_015001.2	2045	aGa/aAa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16259534	16259534	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	54	281	0	ENST00000375759.3:c.6799G>T	p.Glu2267Ter	p.E2267*	ENST00000375759	NM_015001.2	2267	Gag/Tag																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16259936	16259936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	141	691	0	ENST00000375759.3:c.7201G>A	p.Asp2401Asn	p.D2401N	ENST00000375759	NM_015001.2	2401	Gac/Aac																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16260623	16260623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	128	509	3	ENST00000375759.3:c.7888G>A	p.Asp2630Asn	p.D2630N	ENST00000375759	NM_015001.2	2630	Gac/Aac																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16262282	16262282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	45	160	0	ENST00000375759.3:c.9547G>A	p.Glu3183Lys	p.E3183K	ENST00000375759	NM_015001.2	3183	Gag/Aag																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16262375	16262375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	69	220	0	ENST00000375759.3:c.9640G>A	p.Asp3214Asn	p.D3214N	ENST00000375759	NM_015001.2	3214	Gat/Aat																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46597594	46597594	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	43	677	0	ENST00000262741.5:c.31G>C	p.Asp11His	p.D11H	ENST00000262741	NM_003629.3	11	Gat/Cat																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25469044	25469044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	64	592	0	ENST00000264709.3:c.1414G>C	p.Asp472His	p.D472H	ENST00000264709	NM_175629.2	472	Gat/Cat																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156201	106156201	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	57	439	0	ENST00000380013.4:c.1102G>C	p.Glu368Gln	p.E368Q	ENST00000380013	NM_001127208.2	368	Gaa/Caa																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153253817	153253817	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	63	482	1	ENST00000281708.4:c.916C>T	p.Gln306Ter	p.Q306*	ENST00000281708	NM_033632.3	306	Cag/Tag																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131944358	131944358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	129	322	0	ENST00000265335.6:c.2770C>A	p.Gln924Lys	p.Q924K	ENST00000265335		924	Caa/Aaa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176719054	176719054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	93	630	1	ENST00000439151.2:c.6358G>A	p.Glu2120Lys	p.E2120K	ENST00000439151	NM_022455.4	2120	Gag/Aag																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176721189	176721189	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	36	326	0	ENST00000439151.2:c.6820C>T	p.Gln2274Ter	p.Q2274*	ENST00000439151	NM_022455.4	2274	Cag/Tag																																												NEWRECORD																																		
E2F3	0	MSKCC	GRCh37	6	20480176	20480176	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	134	523	0	ENST00000346618.3:c.493G>C	p.Asp165His	p.D165H	ENST00000346618	NM_001949.4	165	Gat/Cat																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099823	157099823	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	38	670	0	ENST00000346085.5:c.760C>G	p.Gln254Glu	p.Q254E	ENST00000346085	NM_020732.3	254	Caa/Gaa																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128843378	128843378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	105	512	0	ENST00000249373.3:c.485G>A	p.Gly162Asp	p.G162D	ENST00000249373	NM_005631.4	162	gGc/gAc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145742803	145742803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	24	148	0	ENST00000428558.2:c.208G>A	p.Glu70Lys	p.E70K	ENST00000428558	NM_004260.3	70	Gaa/Aaa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118370592	118370592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	72	457	0	ENST00000534358.1:c.6122C>T	p.Ser2041Phe	p.S2041F	ENST00000534358	NM_005933.3	2041	tCc/tTc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118373250	118373250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	112	689	0	ENST00000534358.1:c.6643C>T	p.Pro2215Ser	p.P2215S	ENST00000534358	NM_005933.3	2215	Cca/Tca																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49418667	49418667	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	114	512	0	ENST00000301067.7:c.15847C>G	p.Leu5283Val	p.L5283V	ENST00000301067	NM_003482.3	5283	Ctc/Gtc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426643	49426643	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	56	416	0	ENST00000301067.7:c.11845C>T	p.Gln3949Ter	p.Q3949*	ENST00000301067	NM_003482.3	3949	Caa/Taa																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111885247	111885247	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	85	923	4	ENST00000341259.2:c.1135C>T	p.Gln379Ter	p.Q379*	ENST00000341259	NM_005475.2	379	Cag/Tag																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103518152	103518152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	35	412	0	ENST00000355739.4:c.2090C>T	p.Ser697Phe	p.S697F	ENST00000355739	NM_000123.3	697	tCc/tTc																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81610426	81610426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	33	692	0	ENST00000298171.2:c.2024C>T	p.Pro675Leu	p.P675L	ENST00000298171	NM_000369.2	675	cCa/cTa																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99467185	99467185	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	106	720	0	ENST00000268035.6:c.2566G>C	p.Glu856Gln	p.E856Q	ENST00000268035	NM_000875.3	856	Gag/Cag																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2223363	2223363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	41	353	0	ENST00000326181.6:c.975G>C	p.Lys325Asn	p.K325N	ENST00000326181	NM_032271.2	325	aaG/aaC																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89805657	89805657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	175	703	0	ENST00000389301.3:c.4051G>C	p.Glu1351Gln	p.E1351Q	ENST00000389301	NM_000135.2	1351	Gag/Cag																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29576024	29576024	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	59	569	0	ENST00000358273.4:c.3997G>C	p.Glu1333Gln	p.E1333Q	ENST00000358273	NM_001042492.2	1333	Gag/Cag																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5231355	5231355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	21	531	0	ENST00000357368.4:c.2121G>C	p.Glu707Asp	p.E707D	ENST00000357368	NM_002850.3	707	gaG/gaC																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11152135	11152135	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	48	545	0	ENST00000344626.4:c.4323G>C	p.Lys1441Asn	p.K1441N	ENST00000344626	NM_003072.3	1441	aaG/aaC																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50905524	50905524	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	67	855	1	ENST00000440232.2:c.652C>T	p.Arg218Cys	p.R218C	ENST00000440232	NM_002691.3	218	Cgc/Tgc																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29115459	29115459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	44	381	0	ENST00000328354.6:c.607G>A	p.Asp203Asn	p.D203N	ENST00000328354	NM_007194.3	203	Gat/Aat																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41513289	41513289	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	129	729	1	ENST00000263253.7:c.193C>T	p.Gln65Ter	p.Q65*	ENST00000263253	NM_001429.3	65	Cag/Tag																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41568623	41568623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	139	535	0	ENST00000263253.7:c.4573G>C	p.Glu1525Gln	p.E1525Q	ENST00000263253	NM_001429.3	1525	Gaa/Caa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16260485	16260486	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	49	256	0	ENST00000375759.3:c.7756dupA	p.Thr2586AsnfsTer10	p.T2586Nfs*10	ENST00000375759	NM_015001.2	2584	gaa/gAaa																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162749986	162749986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	131	493	0	ENST00000367921.3:c.2518C>T	p.Pro840Ser	p.P840S	ENST00000367921	NM_006182.2	840	Ccc/Tcc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	204	278	0	ENST00000371953.3:c.389G>C	p.Arg130Pro	p.R130P	ENST00000371953	NM_000314.4	130	cGa/cCa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	61	297	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158622630	158622630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	49	711	1	ENST00000263640.3:c.869C>T	p.Ser290Leu	p.S290L	ENST00000263640	NM_001105.4	290	tCg/tTg																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134851565	134851565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	55	312	0	ENST00000398015.3:c.971C>T	p.Ser324Leu	p.S324L	ENST00000398015	NM_004441.4	324	tCa/tTa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187525103	187525103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	15	187	0	ENST00000441802.2:c.10577C>T	p.Ser3526Leu	p.S3526L	ENST00000441802	NM_005245.3	3526	tCa/tTa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187541966	187541966	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	87	395	0	ENST00000441802.2:c.5774A>T	p.Glu1925Val	p.E1925V	ENST00000441802	NM_005245.3	1925	gAg/gTg																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106520065	106520065	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	92	375	0	ENST00000359195.3:c.2493C>G	p.Ile831Met	p.I831M	ENST00000359195	NM_002649.2	831	atC/atG																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133738383	133738383	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	68	206	0	ENST00000318560.5:c.783G>A	p.Trp261Ter	p.W261*	ENST00000318560	NM_005157.4	261	tgG/tgA																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	431698	431698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	48	550	0	ENST00000399788.2:c.2311G>A	p.Glu771Lys	p.E771K	ENST00000399788	NM_001042603.1	771	Gag/Aag																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28622539	28622539	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	101	356	0	ENST00000241453.7:c.1078G>T	p.Glu360Ter	p.E360*	ENST00000241453	NM_004119.2	360	Gaa/Taa																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73355021	73355021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	32	387	0	ENST00000377767.4:c.349G>C	p.Glu117Gln	p.E117Q	ENST00000377767	NM_014953.3	117	Gag/Cag																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060801	38060801	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	45	665	0	ENST00000250448.2:c.1188C>A	p.Phe396Leu	p.F396L	ENST00000250448	NM_004496.3	396	ttC/ttA																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68835718	68835718	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	144	602	0	ENST00000261769.5:c.309G>A	p.Trp103Ter	p.W103*	ENST00000261769	NM_004360.3	103	tgG/tgA																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12013741	12013741	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	92	393	0	ENST00000353533.5:c.683G>C	p.Arg228Thr	p.R228T	ENST00000353533	NM_003010.3	228	aGa/aCa																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37681129	37681129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	51	245	0	ENST00000447079.4:c.3298G>A	p.Asp1100Asn	p.D1100N	ENST00000447079	NM_015083.1	1100	Gat/Aat																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5221036	5221036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	15	242	0	ENST00000357368.4:c.3430G>A	p.Asp1144Asn	p.D1144N	ENST00000357368	NM_002850.3	1144	Gac/Aac																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17945958	17945958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	28	459	0	ENST00000458235.1:c.1981G>A	p.Asp661Asn	p.D661N	ENST00000458235	NM_000215.3	661	Gat/Aat																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411729	63411729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	81	572	0	ENST00000330258.3:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000330258	NM_152424.3	480	Gag/Aag																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937597	76937597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	137	587	0	ENST00000373344.5:c.3151G>A	p.Asp1051Asn	p.D1051N	ENST00000373344	NM_000489.3	1051	Gat/Aat																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115118710	115118711	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	173	451	0	ENST00000257566.3:c.630dup	p.Asn211GlnfsTer16	p.N211Qfs*16	ENST00000257566	NM_016569.3	210	-/C																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061202	38061203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGGT			P-0005348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	167	194	0	ENST00000250448.2:c.786_787insACCGC	p.Gln263ThrfsTer60	p.Q263Tfs*60	ENST00000250448	NM_004496.3	262	-/ACCGC																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	177	286	1	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
NOTCH3	4854	MSKCC	GRCh37	19	15296358	15296358	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	83	543	3	ENST00000263388.2:c.2084del	p.Pro695ArgfsTer165	p.P695Rfs*165	ENST00000263388	NM_000435.2	695	cCg/cg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	245	548	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	124	386	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	119	368	0	ENST00000256078.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	61	Caa/Aaa																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26101090	26101090	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	74	473	0	ENST00000435504.4:c.2T>C	p.Met1?	p.M1?	ENST00000435504		1	aTg/aCg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	38	287	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	100	291	1	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																												NEWRECORD																																		
IL7R	3575	MSKCC	GRCh37	5	35867540	35867541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1250237683		P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	100	356	0	ENST00000303115.3:c.361dup	p.Ile121AsnfsTer8	p.I121Nfs*8	ENST00000303115	NM_002185.3	118	-/A																																												NEWRECORD																																		
ATRX	546	MSKCC	GRCh37	X	76890149	76890150	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	245	608	0	ENST00000373344.5:c.4744dup	p.Thr1582AsnfsTer19	p.T1582Nfs*19	ENST00000373344	NM_000489.3	1582	aca/aAca																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98268793	98268793	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	85	519	0	ENST00000331920.6:c.290delA	p.Asn97ThrfsTer20	p.N97Tfs*20	ENST00000331920	NM_000264.3	97	aAc/ac																																												NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49934243	49934243	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1407832113		P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	291	736	2	ENST00000296474.3:c.2264del	p.Gly755ValfsTer19	p.G755Vfs*19	ENST00000296474	NM_002447.2	755	gGt/gt																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46527638	46527638	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	92	486	2	ENST00000262741.5:c.727C>T	p.Arg243Ter	p.R243*	ENST00000262741	NM_003629.3	243	Cga/Tga																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120510154	120510154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	55	458	1	ENST00000256646.2:c.1355G>A	p.Arg452His	p.R452H	ENST00000256646	NM_024408.3	452	cGt/cAt																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156836745	156836745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	99	514	0	ENST00000524377.1:c.403G>A	p.Val135Met	p.V135M	ENST00000524377	NM_002529.3	135	Gtg/Atg																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16085933	16085933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	68	325	0	ENST00000281043.3:c.1109T>C	p.Leu370Ser	p.L370S	ENST00000281043	NM_005378.4	370	tTg/tCg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248763	212248763	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	64	230	0	ENST00000342788.4:c.3504G>T	p.Glu1168Asp	p.E1168D	ENST00000342788	NM_005235.2	1168	gaG/gaT																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49935070	49935070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1189	136	726	1	ENST00000296474.3:c.1929G>T	p.Glu643Asp	p.E643D	ENST00000296474	NM_002447.2	643	gaG/gaT																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89156956	89156956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	95	404	0	ENST00000336596.2:c.58G>A	p.Gly20Arg	p.G20R	ENST00000336596	NM_005233.5	20	Ggg/Agg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259095	89259095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	54	391	0	ENST00000336596.2:c.239A>T	p.Asn80Ile	p.N80I	ENST00000336596	NM_005233.5	80	aAt/aTt																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55961790	55961790	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	150	546	0	ENST00000263923.4:c.2771T>C	p.Leu924Pro	p.L924P	ENST00000263923	NM_002253.2	924	cTg/cCg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178218	56178218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	142	434	0	ENST00000399503.3:c.3191G>A	p.Arg1064Lys	p.R1064K	ENST00000399503	NM_005921.1	1064	aGa/aAa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176638701	176638701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	107	437	0	ENST00000439151.2:c.3301G>A	p.Asp1101Asn	p.D1101N	ENST00000439151	NM_022455.4	1101	Gat/Aat																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176720964	176720964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	181	489	0	ENST00000439151.2:c.6595C>T	p.Arg2199Cys	p.R2199C	ENST00000439151	NM_022455.4	2199	Cgt/Tgt																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553321	106553321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	100	303	1	ENST00000369096.4:c.1286G>A	p.Ser429Asn	p.S429N	ENST00000369096	NM_001198.3	429	aGc/aAc																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138200477	138200477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	105	218	0	ENST00000237289.4:c.1895G>C	p.Arg632Thr	p.R632T	ENST00000237289	NM_001270507.1	632	aGa/aCa																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101891145	101891145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	40	293	0	ENST00000374994.4:c.106T>C	p.Cys36Arg	p.C36R	ENST00000374994	NM_004612.2	36	Tgt/Cgt																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139390606	139390606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	281	693	0	ENST00000277541.6:c.7585G>A	p.Val2529Ile	p.V2529I	ENST00000277541	NM_017617.3	2529	Gtc/Atc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118372558	118372558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	207	403	0	ENST00000534358.1:c.6491C>T	p.Pro2164Leu	p.P2164L	ENST00000534358	NM_005933.3	2164	cCg/cTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49424776	49424776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	242	536	0	ENST00000301067.7:c.13571G>A	p.Arg4524Gln	p.R4524Q	ENST00000301067	NM_003482.3	4524	cGg/cAg																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56490889	56490889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	54	449	0	ENST00000267101.3:c.2335C>A	p.Pro779Thr	p.P779T	ENST00000267101	NM_001982.3	779	Cca/Aca																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133245292	133245292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	141	479	0	ENST00000320574.5:c.1955C>T	p.Ala652Val	p.A652V	ENST00000320574	NM_006231.2	652	gCt/gTt																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060964	38060964	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35391958		P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	88	282	0	ENST00000250448.2:c.1025C>T	p.Ala342Val	p.A342V	ENST00000250448	NM_004496.3	342	gCg/gTg																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2225320	2225320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	115	497	0	ENST00000326181.6:c.1405C>A	p.Leu469Met	p.L469M	ENST00000326181	NM_032271.2	469	Ctg/Atg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10274042	10274042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	220	571	3	ENST00000330684.3:c.227G>A	p.Arg76His	p.R76H	ENST00000330684	NM_001134407.1	76	cGc/cAc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89337248	89337248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	80	394	0	ENST00000301030.4:c.7783G>T	p.Asp2595Tyr	p.D2595Y	ENST00000301030	NM_001256183.1	2595	Gat/Tat																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48586237	48586237	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	90	235	0	ENST00000342988.3:c.906G>A	p.Trp302Ter	p.W302*	ENST00000342988	NM_005359.5	302	tgG/tgA																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604745	48604745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	125	433	0	ENST00000342988.3:c.1567T>C	p.Cys523Arg	p.C523R	ENST00000342988	NM_005359.5	523	Tgc/Cgc																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10248585	10248585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	94	461	1	ENST00000340748.4:c.4168G>A	p.Gly1390Arg	p.G1390R	ENST00000340748		1390	Ggg/Agg																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24158992	24158992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	79	436	0	ENST00000263121.7:c.664C>A	p.Leu222Ile	p.L222I	ENST00000263121	NM_003073.3	222	Ctc/Atc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41548294	41548294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	136	431	0	ENST00000263253.7:c.3082G>A	p.Asp1028Asn	p.D1028N	ENST00000263253	NM_001429.3	1028	Gac/Aac																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39911613	39911613	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	89	509	0	ENST00000378444.4:c.5017T>A	p.Leu1673Met	p.L1673M	ENST00000378444	NM_001123385.1	1673	Ttg/Atg																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39933367	39933367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	98	549	0	ENST00000378444.4:c.1232G>A	p.Arg411Gln	p.R411Q	ENST00000378444	NM_001123385.1	411	cGg/cAg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53223742	53223742	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	278	665	0	ENST00000375401.3:c.3617A>G	p.Gln1206Arg	p.Q1206R	ENST00000375401	NM_004187.3	1206	cAg/cGg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53228159	53228159	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	209	464	2	ENST00000375401.3:c.2243G>A	p.Arg748Gln	p.R748Q	ENST00000375401	NM_004187.3	748	cGg/cAg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411737	63411737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	120	658	0	ENST00000330258.3:c.1430C>A	p.Pro477His	p.P477H	ENST00000330258	NM_152424.3	477	cCt/cAt																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412470	63412470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	120	776	0	ENST00000330258.3:c.697G>A	p.Asp233Asn	p.D233N	ENST00000330258	NM_152424.3	233	Gat/Aat																																												NEWRECORD																																		
SH2D1A	0	MSKCC	GRCh37	X	123480572	123480572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	62	492	0	ENST00000371139.4:c.80G>A	p.Gly27Asp	p.G27D	ENST00000371139	NM_001114937.2	27	gGc/gAc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118352756	118352756	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	53	417	0	ENST00000534358.1:c.3964del	p.Thr1322ProfsTer34	p.T1322Pfs*34	ENST00000534358	NM_005933.3	1321	Aaa/aa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139390735	139390736	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	117	610	0	ENST00000277541.6:c.7455dupC	p.Ser2486LeufsTer21	p.S2486Lfs*21	ENST00000277541	NM_017617.3	2485	-/C																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70360588	70360589	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGCAGC			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	128	421	0	ENST00000374080.3:c.6162_6167dup	p.Gln2075_Gln2076dup	p.Q2075_Q2076dup	ENST00000374080		2075	gag/gAGCAGCag																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70404809	70404809	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	38	276	1	ENST00000373644.4:c.2328del	p.Lys776AsnfsTer19	p.K776Nfs*19	ENST00000373644	NM_030625.2	775	Aaa/aa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412641	139412641	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	85	498	0	ENST00000277541.6:c.1203del	p.Ser402ArgfsTer229	p.S402Rfs*229	ENST00000277541	NM_017617.3	401	ccC/cc																																												NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1806180	1806181	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs775260779		P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	81	511	1	ENST00000260795.2:c.1206dup	p.Lys403GlnfsTer93	p.K403Qfs*93	ENST00000260795		400	agc/agCc																																												NEWRECORD																																		
HIST1H3D	0	MSKCC	GRCh37	6	26197339	26197343	+	frameshift_variant	Frame_Shift_Del	DEL	ACCGT	ACCGT	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1417	120	938	0	ENST00000356476.2:c.136_140del	p.Thr46GlyfsTer27	p.T46Gfs*27	ENST00000356476		46	ACGGTg/g																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16262553	16262553	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	45	284	0	ENST00000375759.3:c.9822del	p.Ser3275ValfsTer9	p.S3275Vfs*9	ENST00000375759	NM_015001.2	3273	aCc/ac																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2223250	2223250	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	96	541	0	ENST00000326181.6:c.863del	p.Lys288ArgfsTer42	p.K288Rfs*42	ENST00000326181	NM_032271.2	288	Aag/ag																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245449	46245449	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	163	300	0	ENST00000334344.6:c.3546del	p.Phe1182LeufsTer6	p.F1182Lfs*6	ENST00000334344	NM_152641.2	1181	agT/ag																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149634	202149635	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	46	388	0	ENST00000358485.4:c.1077dup	p.Leu360ThrfsTer6	p.L360Tfs*6	ENST00000358485	NM_001080125.1	359	caa/cAaa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108199804	108199804	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	51	309	0	ENST00000278616.4:c.7150del	p.Met2384Ter	p.M2384*	ENST00000278616	NM_000051.3	2382	ggA/gg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	63	583	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	64	273	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157454284	157454284	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	48	480	0	ENST00000346085.5:c.2494C>T	p.Gln832Ter	p.Q832*	ENST00000346085	NM_020732.3	832	Cag/Tag																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29559158	29559159	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	73	478	0	ENST00000358273.4:c.3267dup	p.Gly1090ArgfsTer16	p.G1090Rfs*16	ENST00000358273	NM_001042492.2	1089	gaa/gAaa																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	173	548	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	45	492	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																												NEWRECORD																																		
CBFB	865	MSKCC	GRCh37	16	67070577	67070578	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	118	257	0	ENST00000412916.2:c.207dup	p.Pro70SerfsTer13	p.P70Sfs*13	ENST00000412916		67	-/T																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160679	56160680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	362	402	0	ENST00000399503.3:c.954dupA	p.Leu319ThrfsTer7	p.L319Tfs*7	ENST00000399503	NM_005921.1	318	tta/ttAa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258734	16258735	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			818	166	546	0	ENST00000375759.3:c.6005dup	p.Asn2002LysfsTer2	p.N2002Kfs*2	ENST00000375759	NM_015001.2	2000	gga/ggAa																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111549	8111550	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	182	532	0	ENST00000346208.3:c.1037dup	p.Leu347AlafsTer5	p.L347Afs*5	ENST00000346208		345	-/A																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12870966	12870967	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	117	338	0	ENST00000228872.4:c.193_194insG	p.Gln65ArgfsTer60	p.Q65Rfs*60	ENST00000228872	NM_004064.3	65	cag/cGag																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110248151	110248151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015051-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	187	466	1	ENST00000374672.4:c.1321G>A	p.Asp441Asn	p.D441N	ENST00000374672	NM_004235.4	441	Gat/Aat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	184	346	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0008160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	332	462	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45368289	45368290	+	inframe_insertion	In_Frame_Ins	INS	-	-	TCC			P-0008160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	68	410	0	ENST00000262160.6:c.1310_1312dup	p.Trp437_Ile438insArg	p.W437_I438insR	ENST00000262160	NM_005901.5	438	att/aGGAtt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	130	499	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	147	460	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852251	63852251	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs137983907		P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	151	388	2	ENST00000279873.7:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000279873	NM_032199.2	1010	cGg/cAg																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162740262	162740262	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs199526949		P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	175	508	0	ENST00000367921.3:c.1464A>G	p.Ile488Met	p.I488M	ENST00000367921	NM_006182.2	488	atA/atG																																												NEWRECORD																																		
HIST1H3C	0	MSKCC	GRCh37	6	26045982	26045982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	332	1043	1	ENST00000540144.1:c.344C>T	p.Ala115Val	p.A115V	ENST00000540144	NM_003531.2	115	gCt/gTt																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91306337	91306337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	225	547	2	ENST00000355112.3:c.2024C>T	p.Ala675Val	p.A675V	ENST00000355112	NM_000057.2	675	gCg/gTg																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9624957	9624957	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	464	463	0	ENST00000353224.5:c.20A>G	p.Lys7Arg	p.K7R	ENST00000353224	NM_177990.2	7	aAa/aGa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176036	112176037	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0010112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	161	462	0	ENST00000257430.4:c.4746_4747dup	p.Met1583ThrfsTer68	p.M1583Tfs*68	ENST00000257430	NM_000038.5	1582	gcc/gcCAc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	187	305	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30143128	30143128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	94	263	0	ENST00000389048.3:c.398G>T	p.Arg133Leu	p.R133L	ENST00000389048	NM_004304.4	133	cGc/cTc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55953807	55953807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	110	387	1	ENST00000263923.4:c.3629C>A	p.Pro1210His	p.P1210H	ENST00000263923	NM_002253.2	1210	cCc/cAc																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162206896	162206896	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	93	275	1	ENST00000366898.1:c.779G>T	p.Cys260Phe	p.C260F	ENST00000366898	NM_004562.2	260	tGc/tTc																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2154345	2154345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	165	389	0	ENST00000434045.2:c.583G>T	p.Gly195Cys	p.G195C	ENST00000434045	NM_001127598.1	195	Ggt/Tgt																																												NEWRECORD																																		
HNF1A	0	MSKCC	GRCh37	12	121432139	121432139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	134	347	0	ENST00000257555.6:c.886G>A	p.Gly296Arg	p.G296R	ENST00000257555		296	Gga/Aga																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410931	63410931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	115	456	0	ENST00000330258.3:c.2236C>A	p.Pro746Thr	p.P746T	ENST00000330258	NM_152424.3	746	Cct/Act																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131927082	131927083	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	115	386	0	ENST00000265335.6:c.1620dup	p.Leu541AlafsTer7	p.L541Afs*7	ENST00000265335		540	atg/atGg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	143	381	1	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100727	8100728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	88	522	0	ENST00000346208.3:c.708dupC	p.Ser237GlnfsTer66	p.S237Qfs*66	ENST00000346208		234	ttc/ttCc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55589750	55589750	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	114	624	1	ENST00000288135.5:c.1232C>A	p.Thr411Lys	p.T411K	ENST00000288135	NM_000222.2	411	aCa/aAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	374	721	0	ENST00000269305.4:c.794T>G	p.Leu265Arg	p.L265R	ENST00000269305	NM_001126112.2	265	cTg/cGg																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102869539	102869540	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0005715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	102	565	0	ENST00000307046.8:c.101dup	p.Tyr34Ter	p.Y34*	ENST00000307046	NM_001111285.1	34	tac/taAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577151	7577156	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	TACCAC	TACCAC	-			P-0005715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	331	660	0	ENST00000269305.4:c.783-1_787del		p.X261_splice	ENST00000269305	NM_001126112.2	261																																													NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188200	10188200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	161	453	0	ENST00000256474.2:c.343C>A	p.His115Asn	p.H115N	ENST00000256474	NM_000551.3	115	Cac/Aac																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11184613	11184613	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	163	539	0	ENST00000361445.4:c.6604T>C	p.Phe2202Leu	p.F2202L	ENST00000361445	NM_004958.3	2202	Ttc/Ctc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16255380	16255380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	168	515	1	ENST00000375759.3:c.2645G>T	p.Arg882Leu	p.R882L	ENST00000375759	NM_015001.2	882	cGa/cTa																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185191200	185191200	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150518520		P-0010311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	78	153	0	ENST00000265026.3:c.2081C>T	p.Ser694Leu	p.S694L	ENST00000265026	NM_004721.4	694	tCg/tTg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117706917	117706917	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	103	493	2	ENST00000368508.3:c.2233A>T	p.Ile745Phe	p.I745F	ENST00000368508	NM_002944.2	745	Att/Ttt																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53250020	53250020	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	350	363	0	ENST00000375401.3:c.228+1G>A		p.X76_splice	ENST00000375401	NM_004187.3	76																																													NEWRECORD																																		
VEGFA	0	MSKCC	GRCh37	6	43749765	43749766	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1699	143	773	0	ENST00000523873.1:c.623dup	p.Asn208LysfsTer12	p.N208Kfs*12	ENST00000523873		206	-/A																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47142947	47142947	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0010311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	138	439	0	ENST00000409792.3:c.5015+1del		p.X1672_splice	ENST00000409792	NM_014159.6	1672																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27022913	27022938	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGCCGCCAGCAGCCTGGGCAA	CCCGCCGCCGCCAGCAGCCTGGGCAA	-			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	36	74	0	ENST00000324856.7:c.31_56del	p.Ser11AlafsTer91	p.S11Afs*91	ENST00000324856	NM_006015.4	7	CCCGCCGCCGCCAGCAGCCTGGGCAAc/c																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	318	672	2	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			830	439	810	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243716031	243716031	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1042	191	788	0	ENST00000263826.5:c.1163G>A	p.Arg388His	p.R388H	ENST00000263826	NM_005465.4	388	cGc/cAc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32180367	32180367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	231	523	1	ENST00000375023.3:c.2564G>A	p.Arg855His	p.R855H	ENST00000375023	NM_004557.3	855	cGc/cAc																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90990499	90990499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1032	495	731	0	ENST00000265433.3:c.533C>T	p.Thr178Ile	p.T178I	ENST00000265433	NM_002485.4	178	aCt/aTt																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145740584	145740584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	272	537	1	ENST00000428558.2:c.1433A>G	p.His478Arg	p.H478R	ENST00000428558	NM_004260.3	478	cAc/cGc																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2156624	2156624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	364	940	0	ENST00000434045.2:c.298G>A	p.Val100Ile	p.V100I	ENST00000434045	NM_001127598.1	100	Gtc/Atc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118343093	118343093	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	462	602	0	ENST00000534358.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000534358	NM_005933.3	407	Cga/Tga																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244943	46244943	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			881	545	875	1	ENST00000334344.6:c.3037C>T	p.Gln1013Ter	p.Q1013*	ENST00000334344	NM_152641.2	1013	Caa/Taa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16004954	16004954	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			979	530	985	0	ENST00000268712.3:c.2300T>C	p.Leu767Ser	p.L767S	ENST00000268712	NM_006311.3	767	tTa/tCa																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78896573	78896573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	743	955	0	ENST00000306801.3:c.2570C>T	p.Thr857Met	p.T857M	ENST00000306801	NM_020761.2	857	aCg/aTg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70356326	70356326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	240	552	0	ENST00000374080.3:c.5221C>T	p.Pro1741Ser	p.P1741S	ENST00000374080		1741	Cca/Tca																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			686	326	628	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																												NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			928	434	849	4	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86659240	86659240	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1193	541	993	1	ENST00000274376.6:c.1533del	p.Lys511AsnfsTer9	p.K511Nfs*9	ENST00000274376	NM_002890.2	510	gAa/ga																																												NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70446283	70446284	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1217	458	1142	1	ENST00000373644.4:c.5230dup	p.Arg1744LysfsTer26	p.R1744Kfs*26	ENST00000373644	NM_030625.2	1741	-/A																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46231185	46231185	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1054	436	749	2	ENST00000334344.6:c.1109del	p.Leu370Ter	p.L370*	ENST00000334344	NM_152641.2	369	Ttt/tt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49447772	49447773	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	101	338	0	ENST00000301067.7:c.661dup	p.Ala221GlyfsTer13	p.A221Gfs*13	ENST00000301067	NM_003482.3	221	gct/gGct																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28578215	28578216	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1052	224	1014	0	ENST00000241453.7:c.2955_2956delTC	p.Pro986AlafsTer27	p.P986Afs*27	ENST00000241453	NM_004119.2	985	tcTCcg/tccg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			274	426	470	1	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2226423	2226423	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			716	170	842	0	ENST00000398665.3:c.3907del	p.Ala1303LeufsTer24	p.A1303Lfs*24	ENST00000398665	NM_032482.2	1301	tcG/tc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42791372	42791373	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	157	610	0	ENST00000575354.2:c.436_437delAG	p.Ser146Ter	p.S146*	ENST00000575354	NM_015125.3	144	acAGag/acag																																												NEWRECORD																																		
SMARCB1	6598	MSKCC	GRCh37	22	24175857	24175859	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	271	664	0	ENST00000263121.7:c.1091_1093del	p.Lys364del	p.K364del	ENST00000263121	NM_003073.3	362	gAGAag/gag																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41572252	41572254	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TCT	TCT	-			P-0001185-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	136	574	0	ENST00000263253.7:c.4785_4787delCTT	p.Phe1596del	p.F1596del	ENST00000263253	NM_001429.3	1594	gTCTtc/gtc																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0011448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	356	528	1	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	238	449	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc																																												NEWRECORD																																		
EIF1AX	0	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	223	616	3	ENST00000379607.5:c.38G>T	p.Arg13Leu	p.R13L	ENST00000379607	NM_001412.3	13	cGc/cTc																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	193	489	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720811	89720812	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	64	144	0	ENST00000371953.3:c.968dup	p.Asn323LysfsTer2	p.N323Kfs*2	ENST00000371953	NM_000314.4	321	aca/acAa																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152415537	152415537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	231	544	0	ENST00000206249.3:c.1387T>C	p.Ser463Pro	p.S463P	ENST00000206249	NM_000125.3	463	Tcc/Ccc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	159	554	0	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65306960	65306960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	46	523	1	ENST00000342505.4:c.2617C>T	p.Arg873Cys	p.R873C	ENST00000342505	NM_002227.2	873	Cgc/Tgc																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123258060	123258060	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	249	610	0	ENST00000358487.5:c.1621A>C	p.Ile541Leu	p.I541L	ENST00000358487	NM_000141.4	541	Att/Ctt																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40741957	40741957	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	309	614	0	ENST00000392038.2:c.1015G>C	p.Val339Leu	p.V339L	ENST00000392038	NM_001626.4	339	Gtc/Ctc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692837	89692838	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0011448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	62	106	0	ENST00000371953.3:c.322_323del	p.Leu108Ter	p.L108*	ENST00000371953	NM_000314.4	107	gaTCtt/gatt																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589223	67589225	+	inframe_deletion	In_Frame_Del	DEL	TAA	TAA	-			P-0011448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	140	446	0	ENST00000274335.5:c.1214_1216del	p.Ile405del	p.I405del	ENST00000274335		404	tTAAta/tta																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380282	25380282	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	92	662	0	ENST00000256078.4:c.176C>G	p.Ala59Gly	p.A59G	ENST00000256078	NM_033360.2	59	gCa/gGa																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46123697	46123697	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	69	420	0	ENST00000334344.6:c.79del	p.His27ThrfsTer31	p.H27Tfs*31	ENST00000334344	NM_152641.2	26	ttC/tt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577594	7577605	+	inframe_deletion	In_Frame_Del	DEL	ACAGTCAGAGCC	ACAGTCAGAGCC	-			P-0013295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	60	592	0	ENST00000269305.4:c.676_687del	p.Gly226_Cys229del	p.G226_C229del	ENST00000269305	NM_001126112.2	226	GGCTCTGACTGT/-																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36986635	36986636	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	17	109	0	ENST00000354822.5:c.1053dup	p.Gly352ArgfsTer87	p.G352Rfs*87	ENST00000354822	NM_001079668.2	351	-/A																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099953	27099955	+	frameshift_variant	Frame_Shift_Del	DEL	CAC	CAC	TA			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	140	512	0	ENST00000324856.7:c.3832_3834delinsTA	p.His1278TyrfsTer11	p.H1278Yfs*11	ENST00000324856	NM_006015.4	1278	CAC/TA																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29446310	29446310	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138589984		P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	96	851	0	ENST00000389048.3:c.3257C>T	p.Ser1086Leu	p.S1086L	ENST00000389048	NM_004304.4	1086	tCg/tTg																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198274698	198274698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	221	371	0	ENST00000335508.6:c.700G>C	p.Glu234Gln	p.E234Q	ENST00000335508	NM_012433.2	234	Gag/Cag																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204736116	204736116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	303	602	0	ENST00000302823.3:c.473C>T	p.Pro158Leu	p.P158L	ENST00000302823	NM_005214.4	158	cCa/cTa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212578317	212578317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	235	501	1	ENST00000342788.4:c.940G>A	p.Glu314Lys	p.E314K	ENST00000342788	NM_005235.2	314	Gaa/Aaa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212989619	212989619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	183	336	0	ENST00000342788.4:c.92G>A	p.Gly31Glu	p.G31E	ENST00000342788	NM_005235.2	31	gGa/gAa																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71026194	71026194	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	272	364	0	ENST00000318789.4:c.1429-1G>C		p.X477_splice	ENST00000318789	NM_032682.5	477																																													NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89457258	89457258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	232	313	0	ENST00000336596.2:c.1739G>A	p.Arg580Lys	p.R580K	ENST00000336596	NM_005233.5	580	aGa/aAa																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142238586	142238586	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	181	458	0	ENST00000350721.4:c.4307A>C	p.Asn1436Thr	p.N1436T	ENST00000350721	NM_001184.3	1436	aAc/aCc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189584548	189584548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	370	515	0	ENST00000264731.3:c.844G>A	p.Gly282Arg	p.G282R	ENST00000264731	NM_003722.4	282	Gga/Aga																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612176	189612176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	305	555	2	ENST00000264731.3:c.1928G>A	p.Arg643Gln	p.R643Q	ENST00000264731	NM_003722.4	643	cGa/cAa																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	2692	354	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55964351	55964351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4438	267	646	0	ENST00000263923.4:c.2462C>T	p.Pro821Leu	p.P821L	ENST00000263923	NM_002253.2	821	cCt/cTt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156186	106156186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	230	334	0	ENST00000380013.4:c.1087C>T	p.Pro363Ser	p.P363S	ENST00000380013	NM_001127208.2	363	Cct/Tct																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	131	340	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112179470	112179470	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	462	613	0	ENST00000257430.4:c.8179C>T	p.Gln2727Ter	p.Q2727*	ENST00000257430	NM_000038.5	2727	Cag/Tag																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30672677	30672677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1332	513	825	0	ENST00000376406.3:c.4283C>T	p.Pro1428Leu	p.P1428L	ENST00000376406	NM_014641.2	1428	cCc/cTc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32168991	32168991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	167	723	2	ENST00000375023.3:c.4042G>A	p.Glu1348Lys	p.E1348K	ENST00000375023	NM_004557.3	1348	Gaa/Aaa																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94066618	94066618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	435	892	1	ENST00000369303.4:c.1141C>T	p.Pro381Ser	p.P381S	ENST00000369303	NM_004440.3	381	Ccc/Tcc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117609893	117609893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	383	696	1	ENST00000368508.3:c.6806G>A	p.Arg2269Gln	p.R2269Q	ENST00000368508	NM_002944.2	2269	cGa/cAa																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157405968	157405968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	318	580	1	ENST00000346085.5:c.2210C>T	p.Pro737Leu	p.P737L	ENST00000346085	NM_020732.3	737	cCc/cTc																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2946292	2946292	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	113	528	0	ENST00000396946.4:c.3445G>A	p.Val1149Met	p.V1149M	ENST00000396946	NM_032415.4	1149	Gtg/Atg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55214338	55214339	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	263	473	1	ENST00000275493.2:c.464_465delinsTT	p.Ala155Val	p.A155V	ENST00000275493	NM_005228.3	155	gCC/gTT																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116340007	116340007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	219	342	0	ENST00000397752.3:c.869C>T	p.Ser290Phe	p.S290F	ENST00000397752	NM_000245.2	290	tCc/tTc																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93607866	93607866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	129	518	0	ENST00000375746.1:c.568G>A	p.Gly190Arg	p.G190R	ENST00000375746	NM_001174167.1	190	Gga/Aga																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64575542	64575543	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	237	483	0	ENST00000337652.1:c.489_490delinsTC	p.Phe164Leu	p.F164L	ENST00000337652	NM_130803.2	163	gcCTtt/gcTCtt																																												NEWRECORD																																		
FGF19	0	MSKCC	GRCh37	11	69514329	69514329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	209	337	0	ENST00000294312.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000294312	NM_005117.2	118	Gaa/Aaa																																												NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69625189	69625191	+	missense_variant	Missense_Mutation	ONP	GGG	GGG	AGA			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	239	565	1	ENST00000334134.2:c.602_604delinsTCT	p.Pro201_Pro202delinsLeuSer	p.P201_P202delinsLS	ENST00000334134	NM_005247.2	201	cCCCct/cTCTct																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118366503	118366503	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	326	521	0	ENST00000534358.1:c.5452G>T	p.Glu1818Ter	p.E1818*	ENST00000534358	NM_005933.3	1818	Gag/Tag																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18466972	18466972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	197	476	0	ENST00000266497.5:c.1111G>A	p.Glu371Lys	p.E371K	ENST00000266497		371	Gaa/Aaa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18650617	18650617	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	235	374	0	ENST00000266497.5:c.2828G>A	p.Trp943Ter	p.W943*	ENST00000266497		943	tGg/tAg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46285630	46285630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	330	394	0	ENST00000334344.6:c.4990C>T	p.Pro1664Ser	p.P1664S	ENST00000334344	NM_152641.2	1664	Cca/Tca																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50479186	50479186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	280	437	0	ENST00000394963.4:c.34C>T	p.Pro12Ser	p.P12S	ENST00000394963	NM_003076.4	12	Cca/Tca																																												NEWRECORD																																		
CDK4	0	MSKCC	GRCh37	12	58145022	58145022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	298	473	0	ENST00000257904.6:c.322C>T	p.Pro108Ser	p.P108S	ENST00000257904	NM_000075.3	108	Ccc/Tcc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41999952	41999952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	245	734	0	ENST00000219905.7:c.2215C>T	p.Pro739Ser	p.P739S	ENST00000219905	NM_001164273.1	739	Cca/Tca																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042554	42042554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	255	876	0	ENST00000219905.7:c.6749C>T	p.Pro2250Leu	p.P2250L	ENST00000219905	NM_001164273.1	2250	cCt/cTt																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	347803	347803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	145	655	0	ENST00000262320.3:c.1703C>T	p.Pro568Leu	p.P568L	ENST00000262320	NM_003502.3	568	cCa/cTa																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3778333	3778333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	57	269	0	ENST00000262367.5:c.6715G>A	p.Gly2239Ser	p.G2239S	ENST00000262367	NM_004380.2	2239	Ggc/Agc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858135	9858135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	338	711	0	ENST00000330684.3:c.3266C>T	p.Ser1089Leu	p.S1089L	ENST00000330684	NM_001134407.1	1089	tCa/tTa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72992414	72992414	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs62620235		P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	613	997	2	ENST00000268489.5:c.1631C>T	p.Ser544Leu	p.S544L	ENST00000268489	NM_006885.3	544	tCg/tTg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29541577	29541577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	186	303	0	ENST00000358273.4:c.1501C>T	p.His501Tyr	p.H501Y	ENST00000358273	NM_001042492.2	501	Cat/Tat																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29553513	29553513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	313	439	0	ENST00000358273.4:c.2062G>T	p.Glu688Ter	p.E688*	ENST00000358273	NM_001042492.2	688	Gaa/Taa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29653266	29653266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	108	229	0	ENST00000358273.4:c.5264T>A	p.Ile1755Asn	p.I1755N	ENST00000358273	NM_001042492.2	1755	aTt/aAt																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58725384	58725384	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1447	242	728	0	ENST00000305921.3:c.958A>G	p.Ile320Val	p.I320V	ENST00000305921	NM_003620.3	320	Att/Gtt																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5273549	5273549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	174	457	2	ENST00000357368.4:c.283C>T	p.Pro95Ser	p.P95S	ENST00000357368	NM_002850.3	95	Ccg/Tcg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7119485	7119485	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	400	595	0	ENST00000302850.5:c.3769C>T	p.Gln1257Ter	p.Q1257*	ENST00000302850	NM_000208.2	1257	Caa/Taa																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40730901	40730901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	175	340	0	ENST00000373198.4:c.3634G>A	p.Asp1212Asn	p.D1212N	ENST00000373198	NM_133170.3	1212	Gac/Aac																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40770569	40770569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	234	440	0	ENST00000373198.4:c.2813G>A	p.Gly938Glu	p.G938E	ENST00000373198	NM_133170.3	938	gGg/gAg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40944527	40944527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	210	467	0	ENST00000373198.4:c.1975G>A	p.Asp659Asn	p.D659N	ENST00000373198	NM_133170.3	659	Gat/Aat																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39933811	39933811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	194	689	0	ENST00000378444.4:c.788C>T	p.Ser263Leu	p.S263L	ENST00000378444	NM_001123385.1	263	tCa/tTa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44732880	44732880	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	176	413	0	ENST00000377967.4:c.83G>T	p.Gly28Val	p.G28V	ENST00000377967	NM_021140.2	28	gGa/gTa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44929059	44929059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	517	754	0	ENST00000377967.4:c.2159C>T	p.Pro720Leu	p.P720L	ENST00000377967	NM_021140.2	720	cCt/cTt																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411719	63411719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	158	760	0	ENST00000330258.3:c.1448C>T	p.Ser483Leu	p.S483L	ENST00000330258	NM_152424.3	483	tCa/tTa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76763854	76763855	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	237	753	0	ENST00000373344.5:c.7453_7454delinsAT	p.Gly2485Ile	p.G2485I	ENST00000373344	NM_000489.3	2485	GGa/ATa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937516	76937516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	97	515	0	ENST00000373344.5:c.3232G>A	p.Glu1078Lys	p.E1078K	ENST00000373344	NM_000489.3	1078	Gag/Aag																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937966	76937966	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	191	528	0	ENST00000373344.5:c.2782G>T	p.Glu928Ter	p.E928*	ENST00000373344	NM_000489.3	928	Gag/Tag																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100613604	100613604	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	186	526	0	ENST00000308731.7:c.974+1G>A		p.X325_splice	ENST00000308731	NM_000061.2	325																																													NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123220477	123220477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	283	709	1	ENST00000218089.9:c.3134G>A	p.Arg1045Gln	p.R1045Q	ENST00000218089	NM_001042749.1	1045	cGa/cAa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139391170	139391170	+	frameshift_variant	Frame_Shift_Ins	INS	A	A	CCC			P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	140	338	0	ENST00000277541.6:c.7021delinsGGG	p.Ser2341GlyfsTer8	p.S2341Gfs*8	ENST00000277541	NM_017617.3	2341	Tcc/GGGcc																																												NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227661663	227661664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs761880048		P-0012550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	135	381	12	ENST00000305123.5:c.1791dup	p.His598AlafsTer13	p.H598Afs*13	ENST00000305123	NM_005544.2	597	-/G																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	152	258	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	273	625	1	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134670327	134670327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	203	336	2	ENST00000398015.3:c.238C>T	p.Arg80Trp	p.R80W	ENST00000398015	NM_004441.4	80	Cgg/Tgg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156837973	156837973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1393	135	653	0	ENST00000524377.1:c.506G>A	p.Gly169Glu	p.G169E	ENST00000524377	NM_002529.3	169	gGa/gAa																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458399	120458399	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	172	452	0	ENST00000256646.2:c.6946G>T	p.Ala2316Ser	p.A2316S	ENST00000256646	NM_024408.3	2316	Gcc/Tcc																																												NEWRECORD																																		
MCL1	0	MSKCC	GRCh37	1	150550932	150550932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	93	307	1	ENST00000369026.2:c.724G>A	p.Asp242Asn	p.D242N	ENST00000369026	NM_021960.4	242	Gat/Aat																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42032396	42032396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	95	432	1	ENST00000219905.7:c.4580C>G	p.Pro1527Arg	p.P1527R	ENST00000219905	NM_001164273.1	1527	cCa/cGa																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88678581	88678581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	93	298	1	ENST00000360948.2:c.955C>A	p.His319Asn	p.H319N	ENST00000360948	NM_001012338.2	319	Cac/Aac																																												NEWRECORD																																		
PDPK1	0	MSKCC	GRCh37	16	2636803	2636803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	120	629	1	ENST00000342085.4:c.1252G>A	p.Asp418Asn	p.D418N	ENST00000342085	NM_002613.4	418	Gat/Aat																																												NEWRECORD																																		
STAT5A	0	MSKCC	GRCh37	17	40456406	40456406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	152	637	0	ENST00000345506.4:c.1216C>A	p.His406Asn	p.H406N	ENST00000345506	NM_003152.3	406	Cac/Aac																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12626417	12626417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	260	538	0	ENST00000251849.4:c.1732C>T	p.Pro578Ser	p.P578S	ENST00000251849	NM_002880.3	578	Ccc/Tcc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151875052	151875053	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014755-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	146	191	1	ENST00000262189.6:c.7485dup	p.Glu2496ArgfsTer29	p.E2496Rfs*29	ENST00000262189	NM_170606.2	2495	-/A																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16262612	16262612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	61	1028	0	ENST00000375759.3:c.9877G>A	p.Val3293Met	p.V3293M	ENST00000375759	NM_015001.2	3293	Gtg/Atg																																												NEWRECORD																																		
SDHC	0	MSKCC	GRCh37	1	161284202	161284202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	123	1580	0	ENST00000367975.2:c.7G>A	p.Ala3Thr	p.A3T	ENST00000367975	NM_003001.3	3	Gcg/Acg																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243736302	243736302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	88	1453	0	ENST00000263826.5:c.745C>A	p.Arg249Ser	p.R249S	ENST00000263826	NM_005465.4	249	Cgt/Agt																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29443577	29443577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	92	786	0	ENST00000389048.3:c.3640C>T	p.Arg1214Cys	p.R1214C	ENST00000389048	NM_004304.4	1214	Cgc/Tgc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29498063	29498063	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs116202066		P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	161	1769	0	ENST00000389048.3:c.1943C>T	p.Thr648Ile	p.T648I	ENST00000389048	NM_004304.4	648	aCa/aTa																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52668617	52668617	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	144	1447	0	ENST00000394830.3:c.1301+1G>C		p.X434_splice	ENST00000394830	NM_018313.4	434																																													NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142218528	142218528	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	101	1577	1	ENST00000350721.4:c.5321G>T	p.Arg1774Ile	p.R1774I	ENST00000350721	NM_001184.3	1774	aGa/aTa																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106155475	106155475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	129	1066	0	ENST00000380013.4:c.376G>T	p.Gly126Trp	p.G126W	ENST00000380013	NM_001127208.2	126	Ggg/Tgg																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106164836	106164836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	114	985	1	ENST00000380013.4:c.3704G>C	p.Gly1235Ala	p.G1235A	ENST00000380013	NM_001127208.2	1235	gGa/gCa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187527280	187527280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	123	944	0	ENST00000441802.2:c.10294G>T	p.Asp3432Tyr	p.D3432Y	ENST00000441802	NM_005245.3	3432	Gat/Tat																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	36882060	36882060	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	144	1531	0	ENST00000358127.4:c.953A>T	p.His318Leu	p.H318L	ENST00000358127	NM_001280556.1	318	cAc/cTc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108196900	108196900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	101	960	0	ENST00000278616.4:c.6923C>G	p.Ala2308Gly	p.A2308G	ENST00000278616	NM_000051.3	2308	gCc/gGc																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	417038	417038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	90	1297	0	ENST00000399788.2:c.3512G>T	p.Ser1171Ile	p.S1171I	ENST00000399788	NM_001042603.1	1171	aGt/aTt																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4383345	4383345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	69	1178	1	ENST00000261254.3:c.139G>A	p.Val47Met	p.V47M	ENST00000261254	NM_001759.3	47	Gtg/Atg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49448141	49448141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	160	1286	0	ENST00000301067.7:c.459G>T	p.Glu153Asp	p.E153D	ENST00000301067	NM_003482.3	153	gaG/gaT																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3781272	3781272	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	106	1110	0	ENST00000262367.5:c.5093A>T	p.Gln1698Leu	p.Q1698L	ENST00000262367	NM_004380.2	1698	cAg/cTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	168	1624	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29509525	29509525	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	110	944	1	ENST00000358273.4:c.731-1G>T		p.X244_splice	ENST00000358273	NM_001042492.2	244																																													NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59770850	59770850	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	164	1700	0	ENST00000259008.2:c.2516G>C	p.Trp839Ser	p.W839S	ENST00000259008	NM_032043.2	839	tGg/tCg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11132399	11132399	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	150	1587	0	ENST00000344626.4:c.2617-2A>C		p.X873_splice	ENST00000344626	NM_003072.3	873																																													NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31024638	31024638	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs191965193		P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	165	1622	0	ENST00000375687.4:c.4123G>T	p.Gly1375Trp	p.G1375W	ENST00000375687	NM_015338.5	1375	Ggg/Tgg																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225338988	225338989	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	34	1690	0	ENST00000264414.4:c.2280_2281insA	p.Arg761ThrfsTer34	p.R761Tfs*34	ENST00000264414	NM_003590.4	760	-/A																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99440129	99440129	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	246	1278	0	ENST00000268035.6:c.1101delG	p.Asn368IlefsTer17	p.N368Ifs*17	ENST00000268035	NM_000875.3	366	cGg/cg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3817775	3817776	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AC			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			703	199	2475	0	ENST00000262367.5:c.3194_3195dupGT	p.Ser1066ValfsTer34	p.S1066Vfs*34	ENST00000262367	NM_004380.2	1065	-/GT																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533910	63533910	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	88	828	0	ENST00000307078.5:c.1244delA	p.Glu415GlyfsTer43	p.E415Gfs*43	ENST00000307078	NM_004655.3	415	gAg/gg																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546737	9546738	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0000491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	88	1020	0	ENST00000353224.5:c.1284_1285delCCinsAA	p.His429Asn	p.H429N	ENST00000353224	NM_177990.2	428	tcCCat/tcAAat																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	85	248	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53240732	53240732	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			828	158	536	0	ENST00000375401.3:c.1348G>C	p.Gly450Arg	p.G450R	ENST00000375401	NM_004187.3	450	Ggc/Cgc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002324-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			639	106	321	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																												NEWRECORD																																		
PIK3CB	5291	MSKCC	GRCh37	3	138413709	138413710	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs751821336		P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	16	212	0	ENST00000289153.2:c.1810dup	p.Arg604ProfsTer29	p.R604Pfs*29	ENST00000289153	NM_006219.2	604	cgg/cCgg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	25	387	0	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120468089	120468089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	24	247	0	ENST00000256646.2:c.4350G>T	p.Trp1450Cys	p.W1450C	ENST00000256646	NM_024408.3	1450	tgG/tgT																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47672695	47672695	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	29	300	0	ENST00000233146.2:c.1285C>T	p.Gln429Ter	p.Q429*	ENST00000233146	NM_000251.2	429	Cag/Tag																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89498489	89498489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	21	241	0	ENST00000336596.2:c.2461G>A	p.Gly821Arg	p.G821R	ENST00000336596	NM_005233.5	821	Gga/Aga																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156762	106156762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	20	222	0	ENST00000380013.4:c.1663C>T	p.Pro555Ser	p.P555S	ENST00000380013	NM_001127208.2	555	Cca/Tca																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187628568	187628568	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	24	323	0	ENST00000441802.2:c.2414G>A	p.Trp805Ter	p.W805*	ENST00000441802	NM_005245.3	805	tGg/tAg																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41739591	41739591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	31	255	0	ENST00000242208.4:c.382G>A	p.Glu128Lys	p.E128K	ENST00000242208	NM_002192.2	128	Gag/Aag																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81358940	81358940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	19	289	0	ENST00000222390.5:c.1021C>T	p.Pro341Ser	p.P341S	ENST00000222390	NM_000601.4	341	Cct/Tct																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108139157	108139157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	25	269	0	ENST00000278616.4:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000278616	NM_000051.3	887	Gaa/Aaa																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244079	46244079	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	24	281	0	ENST00000334344.6:c.2173C>T	p.Gln725Ter	p.Q725*	ENST00000334344	NM_152641.2	725	Cag/Tag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434391	49434391	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	11	129	0	ENST00000301067.7:c.7162C>T	p.Gln2388Ter	p.Q2388*	ENST00000301067	NM_003482.3	2388	Caa/Taa																																												NEWRECORD																																		
CDK4	0	MSKCC	GRCh37	12	58145401	58145401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	17	253	0	ENST00000257904.6:c.100C>T	p.Leu34Phe	p.L34F	ENST00000257904	NM_000075.3	34	Ctc/Ttc																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28626731	28626731	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142392340		P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	29	332	0	ENST00000241453.7:c.565G>A	p.Val189Ile	p.V189I	ENST00000241453	NM_004119.2	189	Gtt/Att																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435219	110435219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	10	97	0	ENST00000375856.3:c.3182C>T	p.Ser1061Leu	p.S1061L	ENST00000375856	NM_003749.2	1061	tCg/tTg																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061765	38061765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	24	186	0	ENST00000250448.2:c.224C>T	p.Ala75Val	p.A75V	ENST00000250448	NM_004496.3	75	gCc/gTc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72821487	72821487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	57	394	0	ENST00000268489.5:c.10688G>A	p.Arg3563Lys	p.R3563K	ENST00000268489	NM_006885.3	3563	aGa/aAa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993318	72993318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	42	440	0	ENST00000268489.5:c.727G>A	p.Asp243Asn	p.D243N	ENST00000268489	NM_006885.3	243	Gat/Aat																																												NEWRECORD																																		
STAT5A	0	MSKCC	GRCh37	17	40453403	40453403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	35	560	0	ENST00000345506.4:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000345506	NM_003152.3	367	cCc/cTc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5216752	5216752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	26	275	0	ENST00000357368.4:c.4075G>A	p.Glu1359Lys	p.E1359K	ENST00000357368	NM_002850.3	1359	Gag/Aag																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15271742	15271742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	14	155	0	ENST00000263388.2:c.6697G>A	p.Ala2233Thr	p.A2233T	ENST00000263388	NM_000435.2	2233	Gcc/Acc																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31372633	31372633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149520896		P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	21	295	0	ENST00000328111.2:c.274C>T	p.Arg92Trp	p.R92W	ENST00000328111	NM_006892.3	92	Cgg/Tgg																																												NEWRECORD																																		
U2AF1	0	MSKCC	GRCh37	21	44514606	44514606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	16	161	0	ENST00000291552.4:c.550G>A	p.Glu184Lys	p.E184K	ENST00000291552	NM_006758.2	184	Gag/Aag																																												NEWRECORD																																		
SH2D1A	0	MSKCC	GRCh37	X	123504057	123504057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	20	136	0	ENST00000371139.4:c.233G>A	p.Arg78Gln	p.R78Q	ENST00000371139	NM_001114937.2	78	cGg/cAg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187509959	187509960	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	30	225	0	ENST00000441802.2:c.13553dup	p.Tyr4519LeufsTer30	p.Y4519Lfs*30	ENST00000441802	NM_005245.3	4518	cct/ccCt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187557273	187557273	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	30	285	0	ENST00000441802.2:c.4089del	p.Phe1363LeufsTer5	p.F1363Lfs*5	ENST00000441802	NM_005245.3	1363	ttT/tt																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149983286	149983287	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	18	239	0	ENST00000253339.5:c.2971_2972delinsAA	p.Gly991Lys	p.G991K	ENST00000253339		991	GGa/AAa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139409154	139409155	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0004239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	17	178	0	ENST00000277541.6:c.2015-1_2015delinsAA		p.X672_splice	ENST00000277541	NM_017617.3	672																																													NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0011330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	211	466	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0011330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	182	335	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023151	27023179	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	-			P-0011330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	120	57	0	ENST00000324856.7:c.267_295del	p.Ser90ProfsTer11	p.S90Pfs*11	ENST00000324856	NM_006015.4	86	gGCGGAGCCGGCAGCGGCGGCGGGCCCGGC/g																																												NEWRECORD																																		
RHEB	0	MSKCC	GRCh37	7	151188049	151188049	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1526	138	519	0	ENST00000262187.5:c.104A>C	p.Tyr35Ser	p.Y35S	ENST00000262187	NM_005614.3	35	tAc/tCc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56481621	56481621	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	128	529	0	ENST00000267101.3:c.656T>G	p.Phe219Cys	p.F219C	ENST00000267101	NM_001982.3	219	tTt/tGt																																												NEWRECORD																																		
CALR	0	MSKCC	GRCh37	19	13051127	13051127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1363	275	586	0	ENST00000316448.5:c.563A>G	p.Asn188Ser	p.N188S	ENST00000316448	NM_004343.3	188	aAc/aGc																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371702	55371703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0011330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	90	258	0	ENST00000297316.4:c.394dup	p.His132ProfsTer30	p.H132Pfs*30	ENST00000297316	NM_022454.3	131	gac/gaCc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591104	67591109	+	inframe_deletion	In_Frame_Del	DEL	TTAAAC	TTAAAC	-			P-0011330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	118	249	0	ENST00000274335.5:c.1697_1702del	p.Ile566_Pro568delinsThr	p.I566_P568delinsT	ENST00000274335		566	aTTAAACca/aca																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372446	55372447	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0011330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	191	478	0	ENST00000297316.4:c.1138dup	p.Gln380ProfsTer4	p.Q380Pfs*4	ENST00000297316	NM_022454.3	379	tac/taCc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830920	72830920	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1593	285	792	1	ENST00000268489.5:c.5661del	p.Glu1888LysfsTer26	p.E1888Kfs*26	ENST00000268489	NM_006885.3	1887	aaA/aa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624268	89624269	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0011330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	152	197	0	ENST00000371953.3:c.44_45del	p.Arg15IlefsTer28	p.R15Ifs*28	ENST00000371953	NM_000314.4	14	agGAga/agga																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577035	7577036	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	27	369	0	ENST00000269305.4:c.902dup	p.Gly302ArgfsTer4	p.G302Rfs*4	ENST00000269305	NM_001126112.2	301	cca/ccCa																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180057281	180057281	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142252978		P-0005111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	108	394	1	ENST00000261937.6:c.457G>A	p.Ala153Thr	p.A153T	ENST00000261937	NM_182925.4	153	Gcc/Acc																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57753205	57753205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0005111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	57	229	0	ENST00000274289.3:c.811T>C	p.Tyr271His	p.Y271H	ENST00000274289	NM_006622.3	271	Tat/Cat																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6035245	6035245	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	136	384	0	ENST00000265849.7:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000265849	NM_000535.5	275	Caa/Taa																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56489478	56489478	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	80	349	0	ENST00000267101.3:c.1943T>C	p.Val648Ala	p.V648A	ENST00000267101	NM_001982.3	648	gTg/gCg																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061140	38061141	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCGCTT			P-0005111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	12	34	0	ENST00000250448.2:c.843_848dup	p.Ser282_Gly283dup	p.S282_G283dup	ENST00000250448	NM_004496.3	282	ggg/ggAAGCGGg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	296	424	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988189	36988189	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0008176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	15	127	0	ENST00000354822.5:c.463+1G>A		p.X155_splice	ENST00000354822	NM_001079668.2	155																																													NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30069257	30069257	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0008176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	51	274	0	ENST00000338641.4:c.1123-1G>C		p.X375_splice	ENST00000338641	NM_000268.3	375																																													NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36987148	36987149	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GC			P-0008176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	23	193	0	ENST00000354822.5:c.539_540dup	p.Lys181AlafsTer48	p.K181Afs*48	ENST00000354822	NM_001079668.2	180	-/GC																																												NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29486049	29486050	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	239	355	0	ENST00000358273.4:c.233dup	p.Asn78LysfsTer29	p.N78Kfs*29	ENST00000358273	NM_001042492.2	76	gaa/gAaa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29552152	29552152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	288	500	0	ENST00000358273.4:c.1885G>A	p.Gly629Arg	p.G629R	ENST00000358273	NM_001042492.2	629	Ggg/Agg																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	245	333	1	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593667	55593669	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0009106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	1455	470	0	ENST00000288135.5:c.1735_1737del	p.Asp579del	p.D579del	ENST00000288135	NM_000222.2	578	tATGat/tat																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5244311	5244311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	729	554	0	ENST00000357368.4:c.1171G>A	p.Gly391Ser	p.G391S	ENST00000357368	NM_002850.3	391	Ggc/Agc																																												NEWRECORD																																		
H3F3A	0	MSKCC	GRCh37	1	226253379	226253379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	191	273	2	ENST00000366813.1:c.151G>A	p.Glu51Lys	p.E51K	ENST00000366813		51	Gaa/Aaa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47163828	47163828	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	285	504	0	ENST00000409792.3:c.2298G>C	p.Met766Ile	p.M766I	ENST00000409792	NM_014159.6	766	atG/atC																																												NEWRECORD																																		
RYBP	0	MSKCC	GRCh37	3	72495709	72495709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	344	389	2	ENST00000477973.2:c.361C>A	p.Phe121Leu	p.F121L	ENST00000477973	NM_012234.5	121	ttC/ttA																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32164765	32164765	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1480	327	363	0	ENST00000375023.3:c.5137G>C	p.Val1713Leu	p.V1713L	ENST00000375023	NM_004557.3	1713	Gtg/Ctg																																												NEWRECORD																																		
FGF4	0	MSKCC	GRCh37	11	69588161	69588161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	407	760	0	ENST00000168712.1:c.537C>G	p.Ile179Met	p.I179M	ENST00000168712	NM_002007.2	179	atC/atG																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32911679	32911679	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1236	449	935	0	ENST00000380152.3:c.3187C>T	p.Gln1063Ter	p.Q1063*	ENST00000380152		1063	Cag/Tag																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45856379	45856379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	319	515	0	ENST00000391945.4:c.1793C>T	p.Ser598Leu	p.S598L	ENST00000391945	NM_000400.3	598	tCa/tTa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123217273	123217273	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0009106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	276	456	0	ENST00000218089.9:c.2927A>T	p.Asp976Val	p.D976V	ENST00000218089	NM_001042749.1	976	gAt/gTt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	176	141	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	75	124	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	174	303	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	210	266	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	212	213	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49447772	49447773	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	174	151	0	ENST00000301067.7:c.661dup	p.Ala221GlyfsTer13	p.A221Gfs*13	ENST00000301067	NM_003482.3	221	gct/gGct																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	188	249	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52637555	52637555	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	221	337	0	ENST00000394830.3:c.2761C>T	p.Arg921Ter	p.R921*	ENST00000394830	NM_018313.4	921	Cga/Tga																																												NEWRECORD																																		
MEF2B	0	MSKCC	GRCh37	19	19256679	19256679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	182	170	1	ENST00000162023.5:c.1034G>A	p.Arg345Gln	p.R345Q	ENST00000162023		345	cGg/cAg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	279	241	4	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	115	159	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107099	27107099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	130	139	0	ENST00000324856.7:c.6710C>T	p.Ala2237Val	p.A2237V	ENST00000324856	NM_006015.4	2237	gCg/gTg																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206666384	206666384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	198	215	0	ENST00000367120.3:c.1864C>T	p.Arg622Cys	p.R622C	ENST00000367120	NM_014002.3	622	Cgc/Tgc																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226568861	226568861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150379323		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	319	281	0	ENST00000366794.5:c.1208G>A	p.Arg403Gln	p.R403Q	ENST00000366794	NM_001618.3	403	cGg/cAg																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25497949	25497949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	304	169	0	ENST00000264709.3:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000264709	NM_175629.2	167	cGg/cAg																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47635622	47635622	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	265	296	0	ENST00000233146.2:c.294T>A	p.Tyr98Ter	p.Y98*	ENST00000233146	NM_000251.2	98	taT/taA																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202141631	202141631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	518	258	1	ENST00000358485.4:c.919C>T	p.Arg307Trp	p.R307W	ENST00000358485	NM_001080125.1	307	Cgg/Tgg																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220439805	220439805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	410	334	0	ENST00000243786.2:c.658C>T	p.Arg220Trp	p.R220W	ENST00000243786	NM_002191.3	220	Cgg/Tgg																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	69990402	69990402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	123	234	0	ENST00000352241.4:c.682G>A	p.Asp228Asn	p.D228N	ENST00000352241	NM_198159.2	228	Gat/Aat																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72842124	72842124	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	206	309	1	ENST00000325599.8:c.1124C>T	p.Ala375Val	p.A375V	ENST00000325599	NM_018130.2	375	gCg/gTg																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119635000	119635000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs201787969		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	172	246	0	ENST00000316626.5:c.499C>T	p.Arg167Ter	p.R167*	ENST00000316626		167	Cga/Tga																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55156639	55156639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	217	228	0	ENST00000257290.5:c.3040G>A	p.Ala1014Thr	p.A1014T	ENST00000257290	NM_006206.4	1014	Gct/Act																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187532867	187532867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	290	265	1	ENST00000441802.2:c.9526G>A	p.Glu3176Lys	p.E3176K	ENST00000441802	NM_005245.3	3176	Gaa/Aaa																																												NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86629103	86629103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753769946		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	180	227	0	ENST00000274376.6:c.848G>A	p.Arg283His	p.R283H	ENST00000274376	NM_002890.2	283	cGt/cAt																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131973851	131973851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	203	231	0	ENST00000265335.6:c.3554G>A	p.Arg1185Gln	p.R1185Q	ENST00000265335		1185	cGa/cAa																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180051024	180051024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	257	252	0	ENST00000261937.6:c.1459C>T	p.Arg487Cys	p.R487C	ENST00000261937	NM_182925.4	487	Cgt/Tgt																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36651972	36651972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	224	194	0	ENST00000244741.5:c.94C>T	p.Arg32Cys	p.R32C	ENST00000244741	NM_000389.4	32	Cgc/Tgc																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93979281	93979281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	311	431	0	ENST00000369303.4:c.1547G>A	p.Arg516Gln	p.R516Q	ENST00000369303	NM_004440.3	516	cGg/cAg																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150001106	150001106	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	227	370	0	ENST00000253339.5:c.2498A>G	p.Asn833Ser	p.N833S	ENST00000253339		833	aAt/aGt																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2968260	2968260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	256	250	0	ENST00000396946.4:c.1726C>T	p.Arg576Cys	p.R576C	ENST00000396946	NM_032415.4	576	Cgc/Tgc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116380020	116380020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	286	319	1	ENST00000397752.3:c.1409C>T	p.Ser470Leu	p.S470L	ENST00000397752	NM_000245.2	470	tCa/tTa																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128843429	128843429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs115491500		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	189	158	0	ENST00000249373.3:c.536C>T	p.Thr179Met	p.T179M	ENST00000249373	NM_005631.4	179	aCg/aTg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151845813	151845813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	254	330	0	ENST00000262189.6:c.13199G>A	p.Arg4400Gln	p.R4400Q	ENST00000262189	NM_170606.2	4400	cGg/cAg																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371986	55371986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	22	140	0	ENST00000297316.4:c.676C>T	p.Pro226Ser	p.P226S	ENST00000297316	NM_022454.3	226	Ccg/Tcg																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145739068	145739068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	194	189	0	ENST00000428558.2:c.2087G>A	p.Arg696His	p.R696H	ENST00000428558	NM_004260.3	696	cGt/cAt																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98215787	98215787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	291	269	0	ENST00000331920.6:c.3422C>T	p.Ala1141Val	p.A1141V	ENST00000331920	NM_000264.3	1141	gCg/gTg																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98240362	98240362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	241	210	1	ENST00000331920.6:c.1322G>A	p.Arg441His	p.R441H	ENST00000331920	NM_000264.3	441	cGc/cAc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139410064	139410064	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	268	247	2	ENST00000277541.6:c.1774C>T	p.Arg592Cys	p.R592C	ENST00000277541	NM_017617.3	592	Cgc/Tgc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852655	63852655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	272	264	1	ENST00000279873.7:c.3433G>A	p.Ala1145Thr	p.A1145T	ENST00000279873	NM_032199.2	1145	Gct/Act																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114925330	114925330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	379	324	0	ENST00000543371.1:c.1408G>A	p.Val470Ile	p.V470I	ENST00000543371	NM_001198531.1	470	Gtt/Att																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64129008	64129008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	230	251	1	ENST00000334205.4:c.638C>T	p.Thr213Met	p.T213M	ENST00000334205	NM_003942.2	213	aCg/aTg																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	402294	402294	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	307	375	0	ENST00000399788.2:c.4497G>T	p.Lys1499Asn	p.K1499N	ENST00000399788	NM_001042603.1	1499	aaG/aaT																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856065	111856065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	183	159	2	ENST00000341259.2:c.116G>A	p.Arg39Gln	p.R39Q	ENST00000341259	NM_005475.2	39	cGg/cAg																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73334690	73334690	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	222	287	0	ENST00000377767.4:c.2770C>T	p.Arg924Ter	p.R924*	ENST00000377767	NM_014953.3	924	Cga/Tga																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67477184	67477184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	173	198	0	ENST00000327367.4:c.991G>A	p.Val331Ile	p.V331I	ENST00000327367	NM_005902.3	331	Gtc/Atc																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99500474	99500474	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45475702		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	193	212	0	ENST00000268035.6:c.3907G>A	p.Val1303Ile	p.V1303I	ENST00000268035	NM_000875.3	1303	Gtc/Atc																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	359984	359984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	312	350	0	ENST00000262320.3:c.1105C>T	p.Pro369Ser	p.P369S	ENST00000262320	NM_003502.3	369	Cct/Tct																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2136799	2136799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	353	309	0	ENST00000219476.3:c.4916G>A	p.Arg1639His	p.R1639H	ENST00000219476	NM_000548.3	1639	cGc/cAc																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67116167	67116167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	294	237	0	ENST00000412916.2:c.451C>T	p.Arg151Cys	p.R151C	ENST00000412916		151	Cgc/Tgc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72984762	72984762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	362	351	1	ENST00000268489.5:c.2822C>T	p.Ser941Leu	p.S941L	ENST00000268489	NM_006885.3	941	tCg/tTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	132	147	0	ENST00000269305.4:c.523C>T	p.Arg175Cys	p.R175C	ENST00000269305	NM_001126112.2	175	Cgc/Tgc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16024477	16024477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	308	245	0	ENST00000268712.3:c.1741C>T	p.Arg581Cys	p.R581C	ENST00000268712	NM_006311.3	581	Cgt/Tgt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29665144	29665144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	46	196	0	ENST00000358273.4:c.6806G>A	p.Arg2269His	p.R2269H	ENST00000358273	NM_001042492.2	2269	cGt/cAt																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41256956	41256956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	173	265	0	ENST00000357654.3:c.230C>T	p.Thr77Met	p.T77M	ENST00000357654	NM_007294.3	77	aCg/aTg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78796926	78796926	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	232	231	0	ENST00000306801.3:c.1039T>C	p.Phe347Leu	p.F347L	ENST00000306801	NM_020761.2	347	Ttt/Ctt																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78938101	78938101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	313	289	2	ENST00000306801.3:c.3979G>A	p.Val1327Met	p.V1327M	ENST00000306801	NM_020761.2	1327	Gtg/Atg																																												NEWRECORD																																		
MALT1	0	MSKCC	GRCh37	18	56377265	56377265	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	236	350	2	ENST00000348428.3:c.886C>T	p.Arg296Ter	p.R296*	ENST00000348428	NM_006785.3	296	Cga/Tga																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1627375	1627375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	311	242	4	ENST00000344749.5:c.349G>A	p.Val117Met	p.V117M	ENST00000344749	NM_001136139.2	117	Gtg/Atg																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10246522	10246522	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	170	137	0	ENST00000340748.4:c.4615G>A	p.Val1539Met	p.V1539M	ENST00000340748		1539	Gtg/Atg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15284979	15284979	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	194	187	0	ENST00000263388.2:c.4636C>T	p.Arg1546Cys	p.R1546C	ENST00000263388	NM_000435.2	1546	Cgc/Tgc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15288790	15288790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	11	41	0	ENST00000263388.2:c.3949C>A	p.Pro1317Thr	p.P1317T	ENST00000263388	NM_000435.2	1317	Cca/Aca																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15289746	15289746	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146149484		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	225	166	3	ENST00000263388.2:c.3725G>A	p.Arg1242His	p.R1242H	ENST00000263388	NM_000435.2	1242	cGc/cAc																																												NEWRECORD																																		
CCNE1	0	MSKCC	GRCh37	19	30312660	30312660	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146187350		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	224	294	2	ENST00000262643.3:c.641C>T	p.Ala214Val	p.A214V	ENST00000262643	NM_001238.2	214	gCg/gTg																																												NEWRECORD																																		
SRC	0	MSKCC	GRCh37	20	36024670	36024670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	260	270	0	ENST00000358208.4:c.659G>A	p.Arg220His	p.R220H	ENST00000358208		220	cGc/cAc																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46264652	46264652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	311	307	0	ENST00000371998.3:c.1522G>A	p.Ala508Thr	p.A508T	ENST00000371998		508	Gca/Aca																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24159109	24159109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	237	201	0	ENST00000263121.7:c.781C>T	p.Arg261Cys	p.R261C	ENST00000263121	NM_003073.3	261	Cgc/Tgc																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410486	63410486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	306	138	0	ENST00000330258.3:c.2681G>A	p.Arg894His	p.R894H	ENST00000330258	NM_152424.3	894	cGc/cAc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42799098	42799098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	522	191	0	ENST00000575354.2:c.4586delC	p.Pro1529LeufsTer91	p.P1529Lfs*91	ENST00000575354	NM_015125.3	1528	Ccc/cc																																												NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	54	284	0	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133760023	133760024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	249	248	0	ENST00000318560.5:c.2352dup	p.Arg785GlnfsTer7	p.R785Qfs*7	ENST00000318560	NM_005157.4	782	-/C																																												NEWRECORD																																		
GREM1	0	MSKCC	GRCh37	15	33023096	33023096	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	275	330	1	ENST00000300177.4:c.207del	p.Glu71ArgfsTer13	p.E71Rfs*13	ENST00000300177	NM_001191322.1	69	Ccc/cc																																												NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	345	513	3	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142255005	142255005	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	73	238	0	ENST00000350721.4:c.3764delT	p.Leu1255TyrfsTer7	p.L1255Yfs*7	ENST00000350721	NM_001184.3	1255	tTa/ta																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116339744	116339746	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	246	284	0	ENST00000397752.3:c.611_613del	p.Ser204del	p.S204del	ENST00000397752	NM_000245.2	202	aaTTCt/aat																																												NEWRECORD																																		
BARD1	580	MSKCC	GRCh37	2	215646085	215646085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	193	291	0	ENST00000260947.4:c.513del	p.Asp172MetfsTer40	p.D172Mfs*40	ENST00000260947	NM_000465.2	171	aaA/aa																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94203691	94203691	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	203	301	1	ENST00000323929.3:c.963del	p.Phe321LeufsTer8	p.F321Lfs*8	ENST00000323929	NM_005591.3	321	ttT/tt																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12870820	12870821	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	108	102	0	ENST00000228872.4:c.49dup	p.Asp17GlyfsTer108	p.D17Gfs*108	ENST00000228872	NM_004064.3	16	atg/atGg																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152265366	152265367	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	200	216	0	ENST00000206249.3:c.823dup	p.Glu275GlyfsTer5	p.E275Gfs*5	ENST00000206249	NM_000125.3	273	-/G																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42032388	42032388	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	478	461	0	ENST00000219905.7:c.4575delA	p.Lys1525AsnfsTer18	p.K1525Nfs*18	ENST00000219905	NM_001164273.1	1524	gcA/gc																																												NEWRECORD																																		
TRAF2	7186	MSKCC	GRCh37	9	139793212	139793212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs772564887		P-0003209-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	313	304	3	ENST00000247668.2:c.26del	p.Pro9LeufsTer77	p.P9Lfs*77	ENST00000247668	NM_021138.3	7	aCc/ac																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	109	301	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0008845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	283	807	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1275	232	806	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15952235	15952235	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	187	513	0	ENST00000268712.3:c.6460C>T	p.Gln2154Ter	p.Q2154*	ENST00000268712	NM_006311.3	2154	Cag/Tag																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36206861	36206861	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	112	284	0	ENST00000300305.3:c.651del	p.Ser218AlafsTer19	p.S218Afs*19	ENST00000300305		217	ggG/gg																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252994	36252995	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0008845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	98	290	0	ENST00000300305.3:c.366_367dupGG	p.Asp123GlyfsTer11	p.D123Gfs*11	ENST00000300305		123	gat/gGGat																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	43	554	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	32	256	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	18	400	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	47	715	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	47	574	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6042266	6042266	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	39	455	0	ENST00000265849.7:c.355G>A	p.Asp119Asn	p.D119N	ENST00000265849	NM_000535.5	119	Gat/Aat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	64	762	1	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9892310	9892310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	35	333	0	ENST00000330684.3:c.2180C>T	p.Ala727Val	p.A727V	ENST00000330684	NM_001134407.1	727	gCt/gTt																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5244487	5244487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	21	164	0	ENST00000357368.4:c.995C>T	p.Pro332Leu	p.P332L	ENST00000357368	NM_002850.3	332	cCc/cTc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41551061	41551061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	98	916	0	ENST00000263253.7:c.3205G>A	p.Asp1069Asn	p.D1069N	ENST00000263253	NM_001429.3	1069	Gat/Aat																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89521763	89521763	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	33	334	0	ENST00000336596.2:c.2840C>G	p.Ser947Cys	p.S947C	ENST00000336596	NM_005233.5	947	tCc/tGc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175216	112175217	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	36	299	0	ENST00000257430.4:c.3929dup	p.Ile1311AspfsTer4	p.I1311Dfs*4	ENST00000257430	NM_000038.5	1309	gaa/gAaa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000276-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	44	264	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142281429	142281429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000276-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	47	353	0	ENST00000350721.4:c.815C>T	p.Ser272Leu	p.S272L	ENST00000350721	NM_001184.3	272	tCa/tTa																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68772210	68772210	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000276-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	71	779	2	ENST00000261769.5:c.59G>A	p.Trp20Ter	p.W20*	ENST00000261769	NM_004360.3	20	tGg/tAg																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061187	38061188	+	inframe_insertion	In_Frame_Ins	INS	-	-	CTT			P-0000276-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	44	284	0	ENST00000250448.2:c.799_801dupAAG	p.Lys267dup	p.K267dup	ENST00000250448	NM_004496.3	267	-/AAG																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164774	36164775	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000276-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	42	462	0	ENST00000300305.3:c.1100dupG	p.Met368HisfsTer232	p.M368Hfs*232	ENST00000300305		367	ggc/ggGc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	63	219	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0004407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	132	201	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133747537	133747537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	73	348	0	ENST00000318560.5:c.844G>C	p.Glu282Gln	p.E282Q	ENST00000318560	NM_005157.4	282	Gag/Cag																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70344159	70344159	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199582086		P-0004407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	31	206	0	ENST00000374080.3:c.1895G>A	p.Arg632Gln	p.R632Q	ENST00000374080		632	cGg/cAg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119650	70119686	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATTTTCTCGTGCTTGTTCTTTTATTGTCCACAGGGC	GATTTTCTCGTGCTTGTTCTTTTATTGTCCACAGGGC	-			P-0004407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	20	242	0	ENST00000245479.2:c.686-34_688delGATTTTCTCGTGCTTGTTCTTTTATTGTCCACAGGGC		p.X229_splice	ENST00000245479	NM_000346.3	229																																													NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120478	70120485	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCCCCA	AGCCCCCA	-			P-0004407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	62	409	0	ENST00000245479.2:c.1480_1487delAGCCCCCA	p.Ser494AlafsTer81	p.S494Afs*81	ENST00000245479	NM_000346.3	494	AGCCCCCAg/g																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	67	449	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	40	215	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	138	284	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509436	106509436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			568	117	452	1	ENST00000359195.3:c.1430G>A	p.Arg477His	p.R477H	ENST00000359195	NM_002649.2	477	cGt/cAt																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43597976	43597976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			880	217	467	1	ENST00000355710.3:c.524G>A	p.Arg175His	p.R175H	ENST00000355710	NM_020975.4	175	cGc/cAc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118377271	118377271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	119	508	0	ENST00000534358.1:c.10664G>T	p.Gly3555Val	p.G3555V	ENST00000534358	NM_005933.3	3555	gGc/gTc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207076	1207076	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			656	166	370	0	ENST00000326873.7:c.164T>C	p.Leu55Pro	p.L55P	ENST00000326873	NM_000455.4	55	cTg/cCg																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88659631	88659632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002327-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	48	395	0	ENST00000372037.3:c.419dup	p.Val141CysfsTer8	p.V141Cfs*8	ENST00000372037	NM_004329.2	138	-/C																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	490	633	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70354226	70354226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	207	727	2	ENST00000374080.3:c.4637C>T	p.Thr1546Met	p.T1546M	ENST00000374080		1546	aCg/aTg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099342	157099342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	151	494	0	ENST00000346085.5:c.279C>A	p.His93Gln	p.H93Q	ENST00000346085	NM_020732.3	93	caC/caA																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40468897	40468897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	49	601	0	ENST00000264657.5:c.2167G>A	p.Asp723Asn	p.D723N	ENST00000264657	NM_139276.2	723	Gac/Aac																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42054540	42054541	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	470	715	2	ENST00000219905.7:c.7731dupA	p.Asp2578ArgfsTer45	p.D2578Rfs*45	ENST00000219905	NM_001164273.1	2575	aga/agAa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692920	89692921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	81	353	0	ENST00000371953.3:c.405dupA	p.Cys136MetfsTer44	p.C136Mfs*44	ENST00000371953	NM_000314.4	135	ata/atAa																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249717	110249717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	111	337	0	ENST00000374672.4:c.958G>A	p.Gly320Ser	p.G320S	ENST00000374672	NM_004235.4	320	Ggt/Agt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0007335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	123	428	0	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																													NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	84	646	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187532693	187532693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	83	590	0	ENST00000441802.2:c.9700G>A	p.Glu3234Lys	p.E3234K	ENST00000441802	NM_005245.3	3234	Gaa/Aaa																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11187680	11187680	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0014970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	87	552	0	ENST00000361445.4:c.6216+1G>T		p.X2072_splice	ENST00000361445	NM_004958.3	2072																																													NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68857525	68857526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	66	426	0	ENST00000261769.5:c.2161dup	p.Leu721ProfsTer27	p.L721Pfs*27	ENST00000261769	NM_004360.3	720	-/C																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29554252	29554252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	35	413	0	ENST00000358273.4:c.2268G>C	p.Gln756His	p.Q756H	ENST00000358273	NM_001042492.2	756	caG/caC																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138417850	138417850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	77	685	4	ENST00000289153.2:c.1669C>T	p.Leu557Phe	p.L557F	ENST00000289153	NM_006219.2	557	Ctt/Ttt																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186506990	186506990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	57	366	0	ENST00000323963.5:c.1156C>T	p.Arg386Cys	p.R386C	ENST00000323963		386	Cgt/Tgt																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180047942	180047942	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138368337		P-0014970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	67	659	0	ENST00000261937.6:c.2233C>T	p.Arg745Cys	p.R745C	ENST00000261937	NM_182925.4	745	Cgc/Tgc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32188011	32188011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	108	769	0	ENST00000375023.3:c.1210G>A	p.Asp404Asn	p.D404N	ENST00000375023	NM_004557.3	404	Gat/Aat																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76920218	76920218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014970-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	67	537	0	ENST00000373344.5:c.3859G>A	p.Asp1287Asn	p.D1287N	ENST00000373344	NM_000489.3	1287	Gat/Aat																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47144879	47144879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	94	740	0	ENST00000409792.3:c.4874G>A	p.Arg1625His	p.R1625H	ENST00000409792	NM_014159.6	1625	cGt/cAt																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225370788	225370788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	104	855	5	ENST00000264414.4:c.1091G>A	p.Arg364His	p.R364H	ENST00000264414	NM_003590.4	364	cGt/cAt																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30127996	30127996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	149	992	0	ENST00000263025.4:c.1133C>G	p.Ala378Gly	p.A378G	ENST00000263025	NM_002746.2	378	gCc/gGc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16041495	16041495	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	140	824	0	ENST00000268712.3:c.1384A>C	p.Ile462Leu	p.I462L	ENST00000268712	NM_006311.3	462	Att/Ctt																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53239891	53239891	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	161	504	1	ENST00000375401.3:c.1550A>G	p.Asp517Gly	p.D517G	ENST00000375401	NM_004187.3	517	gAt/gGt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151843802	151843802	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	107	653	0	ENST00000262189.6:c.13913del	p.Leu4638TrpfsTer7	p.L4638Wfs*7	ENST00000262189	NM_170606.2	4638	tTg/tg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52620440	52620440	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0005750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	102	598	0	ENST00000394830.3:c.3312+1del		p.X1104_splice	ENST00000394830	NM_018313.4	1104																																													NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183734	10183735	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	103	601	0	ENST00000256474.2:c.204dup	p.Arg69AlafsTer63	p.R69Afs*63	ENST00000256474	NM_000551.3	68	tcg/tcGg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578526	7578527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	585	479	0	ENST00000269305.4:c.403dupT	p.Cys135LeufsTer14	p.C135Lfs*14	ENST00000269305	NM_001126112.2	135	tgc/tTgc																																												NEWRECORD																																		
GNA11	0	MSKCC	GRCh37	19	3121004	3121004	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			23	397	451	0	ENST00000078429.4:c.907C>G	p.Gln303Glu	p.Q303E	ENST00000078429	NM_002067.2	303	Cag/Gag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426266	49426320	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTGAGTCCCCAGAGAGTGAGGGCTTTACCTCTCCTGGTTCAGTGGCCATTGAC	TTGTGAGTCCCCAGAGAGTGAGGGCTTTACCTCTCCTGGTTCAGTGGCCATTGAC	-			P-0013210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	225	622	0	ENST00000301067.7:c.12168_12222del	p.Glu4056AspfsTer22	p.E4056Dfs*22	ENST00000301067	NM_003482.3	4056	gaGTCAATGGCCACTGAACCAGGAGAGGTAAAGCCCTCACTCTCTGGGGACTCACAA/ga																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	154	457	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0011187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	382	703	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135772950	135772951	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203724		P-0011187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	229	737	0	ENST00000298552.3:c.2672dup	p.Asn891LysfsTer13	p.N891Kfs*13	ENST00000298552	NM_001162426.1	891	aac/aaAc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29001348	29001348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	118	849	0	ENST00000282397.4:c.1384C>A	p.Pro462Thr	p.P462T	ENST00000282397	NM_002019.4	462	Cct/Act																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259047	89259047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	66	522	2	ENST00000336596.2:c.191C>T	p.Pro64Leu	p.P64L	ENST00000336596	NM_005233.5	64	cCc/cTc																																												NEWRECORD																																		
HIST1H3F	0	MSKCC	GRCh37	6	26250601	26250601	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1087	527	1688	0	ENST00000446824.2:c.233A>T	p.Asp78Val	p.D78V	ENST00000446824	NM_021018.2	78	gAc/gTc																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	493259	493259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	161	980	0	ENST00000399788.2:c.304G>A	p.Gly102Arg	p.G102R	ENST00000399788	NM_001042603.1	102	Gga/Aga																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44896898	44896898	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0011187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	512	705	0	ENST00000377967.4:c.620-2A>T		p.X207_splice	ENST00000377967	NM_021140.2	207																																													NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47041559	47041559	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0011187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	63	444	0	ENST00000329236.7:c.1552-2A>T		p.X518_splice	ENST00000329236	NM_001204466.1	518																																													NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49425238	49425257	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTTGATGCTGAGTTGGGA	TGCTTGATGCTGAGTTGGGA	-			P-0011187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	330	934	0	ENST00000301067.7:c.13231_13250delTCCCAACTCAGCATCAAGCA	p.Ser4411GlyfsTer69	p.S4411Gfs*69	ENST00000301067	NM_003482.3	4411	TCCCAACTCAGCATCAAGCAg/g																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119932	70119932	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	405	374	0	ENST00000245479.2:c.934C>T	p.Gln312Ter	p.Q312*	ENST00000245479	NM_000346.3	312	Cag/Tag																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	792	728	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174094	112174095	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	312	565	0	ENST00000257430.4:c.2804dup	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	tac/tAac																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70426847	70426847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	536	612	1	ENST00000373644.4:c.4507C>T	p.Arg1503Trp	p.R1503W	ENST00000373644	NM_030625.2	1503	Cgg/Tgg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857017	9857017	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	295	737	2	ENST00000330684.3:c.4384T>A	p.Ser1462Thr	p.S1462T	ENST00000330684	NM_001134407.1	1462	Tct/Act																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41222973	41222973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	218	1024	0	ENST00000357654.3:c.4958T>C	p.Val1653Ala	p.V1653A	ENST00000357654	NM_007294.3	1653	gTg/gCg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7142913	7142913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	149	764	0	ENST00000302850.5:c.2456G>A	p.Arg819His	p.R819H	ENST00000302850	NM_000208.2	819	cGc/cAc																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	198	726	0	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37646831	37646832	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	AAACCTGTGAAGAAAGAGAAGGAACAGAGGACACGTCACTGACTT			P-0012258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	99	671	0	ENST00000447079.4:c.1993_1994insGACTTAAACCTGTGAAGAAAGAGAAGGAACAGAGGACACGTCACT	p.His664_Leu665insTer	p.H664_L665ins*	ENST00000447079	NM_015083.1	651	-/AAACCTGTGAAGAAAGAGAAGGAACAGAGGACACGTCACTGACTT																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627916	37627917	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0012258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	314	577	0	ENST00000447079.4:c.1831_1832del	p.Thr611SerfsTer29	p.T611Sfs*29	ENST00000447079	NM_015083.1	611	ACt/t																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56183240	56183241	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	219	477	0	ENST00000399503.3:c.4151dupT	p.Arg1385LysfsTer35	p.R1385Kfs*35	ENST00000399503	NM_005921.1	1384	cta/cTta																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	163	423	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56184116	56184116	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014798-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			751	263	490	0	ENST00000399503.3:c.4321G>T	p.Glu1441Ter	p.E1441*	ENST00000399503	NM_005921.1	1441	Gaa/Taa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	148	301	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692922	89692922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	124	204	0	ENST00000371953.3:c.406T>C	p.Cys136Arg	p.C136R	ENST00000371953	NM_000314.4	136	Tgt/Cgt																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	167	328	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508389	106508389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	72	139	0	ENST00000359195.3:c.383C>T	p.Thr128Met	p.T128M	ENST00000359195	NM_002649.2	128	aCg/aTg																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49424970	49424970	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783691		P-0005883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	113	238	0	ENST00000301067.7:c.13518del	p.Ser4507AlafsTer12	p.S4507Afs*12	ENST00000301067	NM_003482.3	4506	ccC/cc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692920	89692921	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	121	206	0	ENST00000371953.3:c.405dupA	p.Cys136MetfsTer44	p.C136Mfs*44	ENST00000371953	NM_000314.4	135	ata/atAa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101112	27101113	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	164	436	0	ENST00000324856.7:c.4395dup	p.Ala1466CysfsTer25	p.A1466Cfs*25	ENST00000324856	NM_006015.4	1465	tct/tcTt																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56440905	56440906	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	G			P-0005883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	187	474	0	ENST00000407977.2:c.431_432delinsC	p.Asp144AlafsTer14	p.D144Afs*14	ENST00000407977		144	gAT/gC																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	60	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	49	308	0	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151877106	151877106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	34	285	0	ENST00000262189.6:c.7255C>T	p.Pro2419Ser	p.P2419S	ENST00000262189	NM_170606.2	2419	Cct/Tct																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98239912	98239912	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	35	232	0	ENST00000331920.6:c.1420G>T	p.Val474Phe	p.V474F	ENST00000331920	NM_000264.3	474	Gtc/Ttc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11130334	11130334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	89	433	0	ENST00000344626.4:c.2573C>T	p.Thr858Met	p.T858M	ENST00000344626	NM_003072.3	858	aCg/aTg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41306729	41306729	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	34	253	0	ENST00000373198.4:c.930T>A	p.Asn310Lys	p.N310K	ENST00000373198	NM_133170.3	310	aaT/aaA																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29121325	29121325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	57	401	0	ENST00000328354.6:c.350G>T	p.Arg117Met	p.R117M	ENST00000328354	NM_007194.3	117	aGg/aTg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10599991	10599992	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	58	353	0	ENST00000171111.5:c.1584_1585del	p.Asp529ProfsTer44	p.D529Pfs*44	ENST00000171111	NM_203500.1	528	caGGac/caac																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52613209	52613210	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	50	330	0	ENST00000394830.3:c.3318dup	p.Glu1107ArgfsTer11	p.E1107Rfs*11	ENST00000394830	NM_018313.4	1106	-/A																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39931789	39931790	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0004124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	55	515	0	ENST00000378444.4:c.2809_2810delinsAA	p.Pro937Asn	p.P937N	ENST00000378444	NM_001123385.1	937	CCc/AAc																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206653830	206653830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	117	752	0	ENST00000367120.3:c.1381G>C	p.Ala461Pro	p.A461P	ENST00000367120	NM_014002.3	461	Gca/Cca																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32907202	32907203	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	94	493	0	ENST00000380152.3:c.1593dup	p.Glu532ArgfsTer3	p.E532Rfs*3	ENST00000380152		529	-/A																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44918690	44918690	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	98	234	0	ENST00000377967.4:c.1173del	p.Ala392HisfsTer47	p.A392Hfs*47	ENST00000377967	NM_021140.2	391	gcA/gc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55592178	55592179	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGCCTA			P-0002680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	224	344	0	ENST00000288135.5:c.1504_1509dupGCCTAT	p.Ala502_Tyr503dup	p.A502_Y503dup	ENST00000288135	NM_000222.2	502	tct/tcTGCCTAt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860358	151860358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002680-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	150	360	0	ENST00000262189.6:c.10304G>T	p.Gly3435Val	p.G3435V	ENST00000262189	NM_170606.2	3435	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	101	554	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380262	25380263	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACTGTACTCCTCTTG			P-0010262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	76	433	0	ENST00000256078.4:c.181_195dup	p.Gln61_Ser65dup	p.Q61_S65dup	ENST00000256078	NM_033360.2	61	-/CAAGAGGAGTACAGT																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	73	606	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	106	625	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372206	55372206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	47	283	1	ENST00000297316.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000297316	NM_022454.3	299	gCg/gTg																																												NEWRECORD																																		
SOX9	6662	MSKCC	GRCh37	17	70119781	70119781	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1274036689		P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	79	778	0	ENST00000245479.2:c.788del	p.Gly263AlafsTer16	p.G263Afs*16	ENST00000245479	NM_000346.3	261	gaG/ga																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152265445	152265445	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149490424		P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	85	535	0	ENST00000206249.3:c.898C>T	p.Arg300Cys	p.R300C	ENST00000206249	NM_000125.3	300	Cgc/Tgc																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	161807890	161807890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	46	672	0	ENST00000366898.1:c.1103G>A	p.Cys368Tyr	p.C368Y	ENST00000366898	NM_004562.2	368	tGt/tAt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72827826	72827826	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	57	1099	0	ENST00000268489.5:c.8755A>C	p.Ser2919Arg	p.S2919R	ENST00000268489	NM_006885.3	2919	Agc/Cgc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173759	112173760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	61	502	0	ENST00000257430.4:c.2469dup	p.Pro824ThrfsTer20	p.P824Tfs*20	ENST00000257430	NM_000038.5	823	tca/tcAa																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15271819	15271819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	69	148	1	ENST00000263388.2:c.6620G>A	p.Arg2207Gln	p.R2207Q	ENST00000263388	NM_000435.2	2207	cGg/cAg																																												NEWRECORD																																		
FAM46C	0	MSKCC	GRCh37	1	118165644	118165644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1601	118	406	0	ENST00000369448.3:c.154G>A	p.Val52Ile	p.V52I	ENST00000369448	NM_017709.3	52	Gtc/Atc																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227660574	227660574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	109	296	1	ENST00000305123.5:c.2881G>A	p.Glu961Lys	p.E961K	ENST00000305123	NM_005544.2	961	Gag/Aag																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50467924	50467924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	282	293	1	ENST00000331340.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000331340	NM_006060.4	387	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577093	7577093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	19	539	1	ENST00000269305.4:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000269305	NM_001126112.2	282	cGg/cAg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108202687	108202688	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	409	447	0	ENST00000278616.4:c.7711_7712insA	p.Phe2571TyrfsTer4	p.F2571Yfs*4	ENST00000278616	NM_000051.3	2571	ttt/tAtt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	112	302	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187																																													NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			16414	1060	571	1	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1272311	1272311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141425941		P-0004043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			840	76	416	0	ENST00000310581.5:c.2371G>A	p.Val791Ile	p.V791I	ENST00000310581	NM_198253.2	791	Gtc/Atc																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120164	70120164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	63	271	1	ENST00000245479.2:c.1166C>T	p.Pro389Leu	p.P389L	ENST00000245479	NM_000346.3	389	cCg/cTg																																												NEWRECORD																																		
IGF1R	3480	MSKCC	GRCh37	15	99442808	99442809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	149	548	0	ENST00000268035.6:c.1211dup	p.Asn404LysfsTer66	p.N404Kfs*66	ENST00000268035	NM_000875.3	402	cta/ctAa																																												NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	70	487	0	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																												NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	103	441	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	199	453	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																												NEWRECORD																																		
VTCN1	0	MSKCC	GRCh37	1	117699283	117699283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	61	471	1	ENST00000369458.3:c.358G>A	p.Val120Met	p.V120M	ENST00000369458	NM_024626.3	120	Gtg/Atg																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	21	147	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	35	193	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	124	643	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29552144	29552144	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	98	441	1	ENST00000358273.4:c.1882delT	p.Tyr628ThrfsTer3	p.Y628Tfs*3	ENST00000358273	NM_001042492.2	626	cTt/ct																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	135	563	0	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	37020768	37020769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	132	565	0	ENST00000358127.4:c.76dupG	p.Val26GlyfsTer49	p.V26Gfs*49	ENST00000358127	NM_001280556.1	26	gtt/gGtt																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13935606	13935606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	74	381	1	ENST00000405192.2:c.1250G>A	p.Arg417His	p.R417H	ENST00000405192	NM_001163147.1	417	cGt/cAt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023079	27023079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	44	131	0	ENST00000324856.7:c.185C>T	p.Ala62Val	p.A62V	ENST00000324856	NM_006015.4	62	gCc/gTc																																												NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110438316	110438317	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTT	rs532810290		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	14	110	2	ENST00000375856.3:c.82_84dup	p.Asn28dup	p.N28dup	ENST00000375856	NM_003749.2	28	-/AAC																																												NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	143	607	1	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	103	540	5	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																												NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	152	714	3	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15353819	15353819	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	58	392	1	ENST00000263377.2:c.3061delC	p.His1021IlefsTer47	p.H1021Ifs*47	ENST00000263377	NM_058243.2	1021	Cat/at																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	160	682	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9934645	9934645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	86	365	1	ENST00000330684.3:c.1510C>T	p.Arg504Trp	p.R504W	ENST00000330684	NM_001134407.1	504	Cgg/Tgg																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	226	571	7	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11313967	11313967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	141	649	4	ENST00000361445.4:c.769C>T	p.Arg257Trp	p.R257W	ENST00000361445	NM_004958.3	257	Cgg/Tgg																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55151647	55151647	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	88	457	2	ENST00000257290.5:c.2438del	p.Asn813IlefsTer20	p.N813Ifs*20	ENST00000257290	NM_006206.4	811	tcA/tc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88726655	88726655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	89	444	0	ENST00000360948.2:c.389G>A	p.Arg130His	p.R130H	ENST00000360948	NM_001012338.2	130	cGt/cAt																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63852527	63852527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	84	385	0	ENST00000279873.7:c.3305C>A	p.Ser1102Tyr	p.S1102Y	ENST00000279873	NM_032199.2	1102	tCt/tAt																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152345768	152345769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	78	393	0	ENST00000359321.1:c.801dup	p.His268ThrfsTer11	p.H268Tfs*11	ENST00000359321	NM_005431.1	267	-/A																																												NEWRECORD																																		
HIST1H3D	0	MSKCC	GRCh37	6	26197427	26197427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	61	802	1	ENST00000356476.2:c.52C>T	p.Arg18Cys	p.R18C	ENST00000356476		18	Cgc/Tgc																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21562747	21562747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	37	136	0	ENST00000382592.4:c.1172G>A	p.Arg391His	p.R391H	ENST00000382592	NM_014572.2	391	cGc/cAc																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	99	371	1	ENST00000318789.4:c.1240delC	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175952	112175952	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	38	238	0	ENST00000257430.4:c.4666del	p.Thr1556LeufsTer9	p.T1556Lfs*9	ENST00000257430	NM_000038.5	1554	gAa/ga																																												NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72822586	72822586	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	124	615	5	ENST00000268489.5:c.9589del	p.Gln3197SerfsTer44	p.Q3197Sfs*44	ENST00000268489	NM_006885.3	3197	Cag/ag																																												NEWRECORD																																		
TNFRSF14	0	MSKCC	GRCh37	1	2488167	2488167	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	110	519	0	ENST00000355716.4:c.64A>G	p.Arg22Gly	p.R22G	ENST00000355716	NM_003820.2	22	Agg/Ggg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107126	27107126	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	61	244	0	ENST00000324856.7:c.6737A>C	p.Glu2246Ala	p.E2246A	ENST00000324856	NM_006015.4	2246	gAg/gCg																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36932161	36932161	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	165	699	2	ENST00000361632.4:c.2308T>C	p.Cys770Arg	p.C770R	ENST00000361632		770	Tgt/Cgt																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193172934	193172934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	96	391	0	ENST00000367435.3:c.982T>C	p.Ser328Pro	p.S328P	ENST00000367435	NM_024529.4	328	Tct/Cct																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241663779	241663779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	48	190	0	ENST00000366560.3:c.1348A>G	p.Asn450Asp	p.N450D	ENST00000366560	NM_000143.3	450	Aat/Gat																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25973061	25973061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	99	534	0	ENST00000435504.4:c.1364C>T	p.Pro455Leu	p.P455L	ENST00000435504		455	cCg/cTg																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48033679	48033679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	62	370	0	ENST00000234420.5:c.3890G>A	p.Ser1297Asn	p.S1297N	ENST00000234420	NM_000179.2	1297	aGc/aAc																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61729424	61729424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	68	384	0	ENST00000401558.2:c.323G>A	p.Gly108Asp	p.G108D	ENST00000401558	NM_003400.3	108	gGc/gAc																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37090470	37090470	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	141	324	1	ENST00000231790.2:c.2065C>T	p.Gln689Ter	p.Q689*	ENST00000231790	NM_000249.3	689	Cag/Tag																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47098610	47098610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	98	520	0	ENST00000409792.3:c.6664C>T	p.Pro2222Ser	p.P2222S	ENST00000409792	NM_014159.6	2222	Cca/Tca																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916935	178916935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	105	583	0	ENST00000263967.3:c.322C>A	p.Arg108Ser	p.R108S	ENST00000263967	NM_006218.2	108	Cgt/Agt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187524402	187524402	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	92	450	0	ENST00000441802.2:c.11278T>C	p.Ser3760Pro	p.S3760P	ENST00000441802	NM_005245.3	3760	Tca/Cca																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294577	1294577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	40	207	1	ENST00000310581.5:c.424C>T	p.Arg142Cys	p.R142C	ENST00000310581	NM_198253.2	142	Cgc/Tgc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160663	56160663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	106	429	1	ENST00000399503.3:c.937C>T	p.Arg313Trp	p.R313W	ENST00000399503	NM_005921.1	313	Cgg/Tgg																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180056752	180056752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	104	622	0	ENST00000261937.6:c.760G>A	p.Val254Met	p.V254M	ENST00000261937	NM_182925.4	254	Gtg/Atg																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26032224	26032224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	29	448	0	ENST00000244661.2:c.65C>T	p.Ala22Val	p.A22V	ENST00000244661	NM_003537.3	22	gCt/gTt																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553005	106553005	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	109	490	0	ENST00000369096.4:c.970A>G	p.Ile324Val	p.I324V	ENST00000369096	NM_001198.3	324	Atc/Gtc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157469884	157469884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	97	501	0	ENST00000346085.5:c.2678C>A	p.Ala893Asp	p.A893D	ENST00000346085	NM_020732.3	893	gCt/gAt																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81381447	81381447	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	49	511	0	ENST00000222390.5:c.614A>G	p.Gln205Arg	p.Q205R	ENST00000222390	NM_000601.4	205	cAg/cGg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151864329	151864329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	127	545	0	ENST00000262189.6:c.9652A>G	p.Thr3218Ala	p.T3218A	ENST00000262189	NM_170606.2	3218	Act/Gct																																												NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128752659	128752659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	25	363	0	ENST00000377970.2:c.820G>A	p.Glu274Lys	p.E274K	ENST00000377970	NM_002467.4	274	Gag/Aag																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63850811	63850811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	112	493	1	ENST00000279873.7:c.1589C>T	p.Ala530Val	p.A530V	ENST00000279873	NM_032199.2	530	gCa/gTa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344182	118344182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	33	513	0	ENST00000534358.1:c.2308C>A	p.Leu770Ile	p.L770I	ENST00000534358	NM_005933.3	770	Ctc/Atc																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12022361	12022361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	155	705	0	ENST00000396373.4:c.467A>G	p.Asn156Ser	p.N156S	ENST00000396373	NM_001987.4	156	aAc/aGc																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18656215	18656215	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	56	270	0	ENST00000266497.5:c.2894G>C	p.Gly965Ala	p.G965A	ENST00000266497		965	gGa/gCa																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244127	46244127	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	89	412	0	ENST00000334344.6:c.2221A>G	p.Ser741Gly	p.S741G	ENST00000334344	NM_152641.2	741	Agt/Ggt																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26970491	26970491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201577656		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	57	315	0	ENST00000381527.3:c.860C>T	p.Thr287Met	p.T287M	ENST00000381527	NM_001260.1	287	aCg/aTg																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99454670	99454670	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	93	458	0	ENST00000268035.6:c.1589C>T	p.Ala530Val	p.A530V	ENST00000268035	NM_000875.3	530	gCa/gTa																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56839504	56839504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	196	722	0	ENST00000308159.5:c.449C>T	p.Ala150Val	p.A150V	ENST00000308159	NM_014669.4	150	gCa/gTa																																												NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8110678	8110678	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	46	476	0	ENST00000585124.1:c.214T>C	p.Phe72Leu	p.F72L	ENST00000585124	NM_004217.3	72	Ttc/Ctc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15961219	15961219	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	55	262	0	ENST00000268712.3:c.6168+2T>C		p.X2056_splice	ENST00000268712	NM_006311.3	2056																																													NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37686961	37686961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	112	493	2	ENST00000447079.4:c.3865G>A	p.Ala1289Thr	p.A1289T	ENST00000447079	NM_015083.1	1289	Gcc/Acc																																												NEWRECORD																																		
HOXB13	0	MSKCC	GRCh37	17	46805910	46805910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	115	611	0	ENST00000290295.7:c.46G>A	p.Glu16Lys	p.E16K	ENST00000290295	NM_006361.5	16	Gaa/Aaa																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533556	63533556	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147716924		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	121	665	0	ENST00000307078.5:c.1598C>T	p.Ala533Val	p.A533V	ENST00000307078	NM_004655.3	533	gCg/gTg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2223404	2223404	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	116	543	0	ENST00000398665.3:c.3515T>C	p.Leu1172Pro	p.L1172P	ENST00000398665	NM_032482.2	1172	cTg/cCg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2226610	2226610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	71	371	0	ENST00000398665.3:c.4090G>A	p.Ala1364Thr	p.A1364T	ENST00000398665	NM_032482.2	1364	Gcc/Acc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11136120	11136120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	143	661	0	ENST00000344626.4:c.3104T>C	p.Leu1035Pro	p.L1035P	ENST00000344626	NM_003072.3	1035	cTg/cCg																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50905752	50905752	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	45	666	0	ENST00000440232.2:c.800A>T	p.Glu267Val	p.E267V	ENST00000440232	NM_002691.3	267	gAg/gTg																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50910427	50910427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	122	716	2	ENST00000440232.2:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000440232	NM_002691.3	561	cGg/cAg																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30074207	30074207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	88	658	0	ENST00000338641.4:c.1469C>T	p.Pro490Leu	p.P490L	ENST00000338641	NM_000268.3	490	cCg/cTg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41568502	41568502	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	84	260	0	ENST00000263253.7:c.4453-1G>A		p.X1485_splice	ENST00000263253	NM_001429.3	1485																																													NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47426305	47426305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	172	385	0	ENST00000377045.4:c.722C>T	p.Thr241Ile	p.T241I	ENST00000377045	NM_001654.4	241	aCt/aTt																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37650793	37650795	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	92	506	1	ENST00000447079.4:c.2269_2271del	p.Lys757del	p.K757del	ENST00000447079	NM_015083.1	755	ctGAAg/ctg																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90995032	90995032	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	68	345	0	ENST00000265433.3:c.89del	p.Asn30ThrfsTer5	p.N30Tfs*5	ENST00000265433	NM_002485.4	30	aAc/ac																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24134056	24134057	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	115	618	0	ENST00000263121.7:c.214dupA	p.Thr72AsnfsTer4	p.T72Nfs*4	ENST00000263121	NM_003073.3	69	-/A																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10270726	10270726	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	97	469	0	ENST00000340748.4:c.1009del	p.Met337TrpfsTer8	p.M337Wfs*8	ENST00000340748		337	Atg/tg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52716002	52716002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	110	603	0	ENST00000322088.6:c.571del	p.Glu191SerfsTer39	p.E191Sfs*39	ENST00000322088	NM_014225.5	189	ctG/ct																																												NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98270529	98270530	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs778175153		P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	39	287	0	ENST00000331920.6:c.114dup	p.Leu39AlafsTer51	p.L39Afs*51	ENST00000331920	NM_000264.3	38	-/G																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29550472	29550473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	33	274	0	ENST00000358273.4:c.1738dup	p.Tyr580LeufsTer8	p.Y580Lfs*8	ENST00000358273	NM_001042492.2	578	ctt/cTtt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49447401	49447402	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	104	441	0	ENST00000301067.7:c.696_697del	p.Cys232Ter	p.C232*	ENST00000301067	NM_003482.3	232	tgTGag/tgag																																												NEWRECORD																																		
SMARCD1	6602	MSKCC	GRCh37	12	50482355	50482355	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	104	461	0	ENST00000394963.4:c.711del	p.Phe237LeufsTer5	p.F237Lfs*5	ENST00000394963	NM_003076.4	236	Ttt/tt																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48023186	48023189	+	frameshift_variant	Frame_Shift_Del	DEL	AGGA	AGGA	-			P-0011071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	191	891	0	ENST00000234420.5:c.613_616del	p.Glu205LysfsTer5	p.E205Kfs*5	ENST00000234420	NM_000179.2	204	gAGGAa/ga																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26031970	26031970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000447-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	487	176	0	ENST00000244661.2:c.319G>A	p.Asp107Asn	p.D107N	ENST00000244661	NM_003537.3	107	Gac/Aac																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41243829	41243829	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000447-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	44	447	0	ENST00000357654.3:c.3719A>T	p.Gln1240Leu	p.Q1240L	ENST00000357654	NM_007294.3	1240	cAg/cTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577074	7577075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000447-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	336	420	0	ENST00000269305.4:c.863dupA	p.Asn288LysfsTer18	p.N288Kfs*18	ENST00000269305	NM_001126112.2	288	aat/aaAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0007332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	78	730	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	15	460	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711927	89711928	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001337-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	131	404	0	ENST00000371953.3:c.548dup	p.Asn184GlufsTer6	p.N184Efs*6	ENST00000371953	NM_000314.4	182	tta/ttAa																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	54	108	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	54	108	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0008282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	82	208	1	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116411613	116411613	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	188	281	0	ENST00000397752.3:c.2792T>G	p.Phe931Cys	p.F931C	ENST00000397752	NM_000245.2	931	tTc/tGc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116411622	116411622	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	177	301	0	ENST00000397752.3:c.2801T>C	p.Leu934Ser	p.L934S	ENST00000397752	NM_000245.2	934	tTg/tCg																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116411869	116411989	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTTAACAAGCTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAGTTCGCTACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAA	CTTTAACAAGCTCTTTCTTTCTCTCTGTTTTAAGATCTGGGCAGTGAATTAGTTCGCTACGATGCAAGAGTACACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGTAAGCCCAA	-			P-0008282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	57	108	0	ENST00000397752.3:c.2888-32_2976del		p.X963_splice	ENST00000397752	NM_000245.2	963																																													NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67593368	67593369	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	49	223	0	ENST00000274335.5:c.2115dup	p.His706AlafsTer35	p.H706Afs*35	ENST00000274335		705	cag/caGg																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	54	108	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	50	152	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	148	379	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56189412	56189412	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	150	356	0	ENST00000399503.3:c.4444C>T	p.Arg1482Ter	p.R1482*	ENST00000399503	NM_005921.1	1482	Cga/Tga																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	101	317	0	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453138	140453139	+	inframe_insertion	In_Frame_Ins	INS	-	-	GTA			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	257	248	0	ENST00000288602.6:c.1794_1796dupTAC	p.Thr599dup	p.T599dup	ENST00000288602	NM_004333.4	599	aca/acTACa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	191	225	0	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g																																												NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467589	66467589	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs772693559		P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	89	329	1	ENST00000273854.3:c.680G>A	p.Arg227His	p.R227H	ENST00000273854	NM_004439.5	227	cGt/cAt																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	228339	228339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	69	144	0	ENST00000264932.6:c.661G>T	p.Ala221Ser	p.A221S	ENST00000264932	NM_004168.2	221	Gcc/Tcc																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29911177	29911177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	40	82	0	ENST00000376809.5:c.476C>G	p.Ala159Gly	p.A159G	ENST00000376809	NM_002116.7	159	gCg/gGg																																												NEWRECORD																																		
PRKAR1A	0	MSKCC	GRCh37	17	66519933	66519933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	72	241	0	ENST00000358598.2:c.416C>T	p.Ser139Leu	p.S139L	ENST00000358598	NM_212471.2	139	tCa/tTa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174097	112174112	+	frameshift_variant	Frame_Shift_Del	DEL	AATTTCACTAAGTCGG	AATTTCACTAAGTCGG	-			P-0007998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	95	284	0	ENST00000257430.4:c.2808_2823del	p.Asn936LysfsTer14	p.N936Kfs*14	ENST00000257430	NM_000038.5	936	AATTTCACTAAGTCGGaa/aa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	344	339	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
CALR	0	MSKCC	GRCh37	19	13054366	13054366	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1585	517	796	0	ENST00000316448.5:c.976A>G	p.Ile326Val	p.I326V	ENST00000316448	NM_004343.3	326	Atc/Gtc																																												NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32910455	32910455	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1262	712	819	1	ENST00000380152.3:c.1964del	p.Pro655GlnfsTer5	p.P655Qfs*5	ENST00000380152		655	Cca/ca																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	55	673	1	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	82	1032	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856640	111856640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	85	461	0	ENST00000341259.2:c.691G>A	p.Asp231Asn	p.D231N	ENST00000341259	NM_005475.2	231	Gat/Aat																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42041747	42041748	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	80	1327	0	ENST00000219905.7:c.5945dup	p.Asn1982LysfsTer23	p.N1982Kfs*23	ENST00000219905	NM_001164273.1	1981	aca/acAa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000136-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	8	160	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16264010	16264011	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000136-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	205	559	0	ENST00000375759.3:c.10381dupA	p.Thr3461AsnfsTer17	p.T3461Nfs*17	ENST00000375759	NM_015001.2	3460	cca/ccAa																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115830	8115837	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGCCG	CCCGGCCG	-			P-0000136-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			701	381	551	0	ENST00000346208.3:c.1179_1186delGGCCGCCC	p.Ala394LeufsTer110	p.A394Lfs*110	ENST00000346208		392	aaCCCGGCCGcc/aacc																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99152276	99152276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002679-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	109	326	0	ENST00000074304.5:c.355G>A	p.Val119Met	p.V119M	ENST00000074304	NM_001134224.1	119	Gtg/Atg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579546	7579547	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	GGGGACAGCATCAA			P-0002679-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	180	218	0	ENST00000269305.4:c.127_140dup	p.Asp48Ter	p.D48*	ENST00000269305	NM_001126112.2	47	ccg/ccTTGATGCTGTCCCCg																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206650130	206650130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	120	335	0	ENST00000367120.3:c.650G>A	p.Gly217Asp	p.G217D	ENST00000367120	NM_014002.3	217	gGc/gAc																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101907096	101907096	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	50	346	1	ENST00000374994.4:c.1056A>T	p.Leu352Phe	p.L352F	ENST00000374994	NM_004612.2	352	ttA/ttT																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29684052	29684052	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	63	353	0	ENST00000358273.4:c.7813T>G	p.Leu2605Val	p.L2605V	ENST00000358273	NM_001042492.2	2605	Ttg/Gtg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7117126	7117126	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	153	448	0	ENST00000302850.5:c.4090A>G	p.Met1364Val	p.M1364V	ENST00000302850	NM_000208.2	1364	Atg/Gtg																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87563410	87563411	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GT			P-0004930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	75	293	0	ENST00000277120.3:c.1798_1799insGT	p.Asp600GlyfsTer10	p.D600Gfs*10	ENST00000277120		600	gac/gGTac																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266112	+	inframe_deletion	In_Frame_Del	DEL	ACTCTGGAATCCATT	ACTCTGGAATCCATT	-			P-0004930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	101	376	0	ENST00000349496.5:c.95_109del	p.Asp32_Ser37delinsAla	p.D32_S37delinsA	ENST00000349496	NM_001904.3	32	gACTCTGGAATCCATTct/gct																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	92	386	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152265466	152265466	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	52	285	0	ENST00000206249.3:c.919G>C	p.Ala307Pro	p.A307P	ENST00000206249	NM_000125.3	307	Gcc/Ccc																																												NEWRECORD																																		
HOXB13	10481	MSKCC	GRCh37	17	46804267	46804267	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs767502912		P-0004541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	96	609	4	ENST00000290295.7:c.740G>A	p.Arg247His	p.R247H	ENST00000290295	NM_006361.5	247	cGc/cAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577134	7577135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	170	510	0	ENST00000269305.4:c.803dup	p.Asn268LysfsTer4	p.N268Kfs*4	ENST00000269305	NM_001126112.2	268	aac/aaAc																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	371	478	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	397	434	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0004718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	1077	441	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15354058	15354058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	27	186	0	ENST00000263377.2:c.2822C>A	p.Pro941His	p.P941H	ENST00000263377	NM_058243.2	941	cCt/cAt																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120464364	120464365	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	54	430	0	ENST00000256646.2:c.5281dup	p.Asp1761GlyfsTer2	p.D1761Gfs*2	ENST00000256646	NM_024408.3	1761	gat/gGat																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	71	357	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50455090	50455090	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	45	260	2	ENST00000331340.3:c.637C>T	p.Arg213Ter	p.R213*	ENST00000331340	NM_006060.4	213	Cga/Tga																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604754	48604754	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	76	383	0	ENST00000342988.3:c.1576G>T	p.Glu526Ter	p.E526*	ENST00000342988	NM_005359.5	526	Gaa/Taa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434090	49434090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	41	178	0	ENST00000301067.7:c.7463C>T	p.Ser2488Leu	p.S2488L	ENST00000301067	NM_003482.3	2488	tCg/tTg																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55129867	55129867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	57	426	0	ENST00000257290.5:c.401C>T	p.Thr134Met	p.T134M	ENST00000257290	NM_006206.4	134	aCg/aTg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46231329	46231329	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0008568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	60	300	0	ENST00000334344.6:c.1169T>G	p.Leu390Ter	p.L390*	ENST00000334344	NM_152641.2	390	tTa/tGa																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26923281	26923281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1229	74	461	0	ENST00000381527.3:c.277G>A	p.Val93Met	p.V93M	ENST00000381527	NM_001260.1	93	Gtg/Atg																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457713	67457713	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	59	397	0	ENST00000327367.4:c.523A>G	p.Asn175Asp	p.N175D	ENST00000327367	NM_005902.3	175	Aat/Gat																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	62	324	0	ENST00000342988.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000342988	NM_005359.5	536	cTa/cCa																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70117948	70117949	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	28	157	0	ENST00000245479.2:c.419dup	p.Lys141GlnfsTer111	p.K141Qfs*111	ENST00000245479	NM_000346.3	139	ctg/ctGg																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95566237	95566238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	76	265	0	ENST00000343455.3:c.4085dup	p.Lys1363GlufsTer13	p.K1363Efs*13	ENST00000343455	NM_177438.2	1362	aag/aaAg																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	105	217	1	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49424990	49424990	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	75	209	0	ENST00000301067.7:c.13498C>G	p.Gln4500Glu	p.Q4500E	ENST00000301067	NM_003482.3	4500	Cag/Gag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49433758	49433758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	104	248	0	ENST00000301067.7:c.7795G>A	p.Gly2599Arg	p.G2599R	ENST00000301067	NM_003482.3	2599	Ggg/Agg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42795051	42795051	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	94	302	0	ENST00000575354.2:c.2131A>G	p.Met711Val	p.M711V	ENST00000575354	NM_015125.3	711	Atg/Gtg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099063	27099064	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AA			P-0001935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	241	250	0	ENST00000324856.7:c.3481_3482dup	p.Pro1162SerfsTer19	p.P1162Sfs*19	ENST00000324856	NM_006015.4	1160	tta/ttAAa																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12032496	12032497	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0001935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	166	197	0	ENST00000353533.5:c.933_934del	p.Asn311LysfsTer4	p.N311Kfs*4	ENST00000353533	NM_003010.3	311	aAT/a																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073502	8073502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	1291	733	1	ENST00000377482.5:c.1157G>A	p.Gly386Glu	p.G386E	ENST00000377482	NM_018948.3	386	gGg/gAg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16261803	16261803	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	138	286	1	ENST00000375759.3:c.9068C>T	p.Ala3023Val	p.A3023V	ENST00000375759	NM_015001.2	3023	gCt/gTt																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72076824	72076824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	232	325	0	ENST00000357731.5:c.673C>T	p.Pro225Ser	p.P225S	ENST00000357731	NM_173808.2	225	Cct/Tct																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204518301	204518301	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	563	448	1	ENST00000367182.3:c.964C>T	p.Arg322Cys	p.R322C	ENST00000367182	NM_001278516.1	322	Cgt/Tgt																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204735351	204735351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	147	193	0	ENST00000302823.3:c.152G>A	p.Arg51Gln	p.R51Q	ENST00000302823	NM_005214.4	51	cGa/cAa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212285228	212285228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	433	370	0	ENST00000342788.4:c.3073C>T	p.Pro1025Ser	p.P1025S	ENST00000342788	NM_005235.2	1025	Cct/Tct																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	70014095	70014095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	3372	720	2	ENST00000352241.4:c.1259C>T	p.Pro420Leu	p.P420L	ENST00000352241	NM_198159.2	420	cCc/cTc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808632	1808632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	408	664	0	ENST00000260795.2:c.2245G>A	p.Asp749Asn	p.D749N	ENST00000260795		749	Gac/Aac																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106197421	106197421	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	365	422	0	ENST00000380013.4:c.5754A>T	p.Glu1918Asp	p.E1918D	ENST00000380013	NM_001127208.2	1918	gaA/gaT																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187557801	187557801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	394	392	0	ENST00000441802.2:c.3910C>T	p.Pro1304Ser	p.P1304S	ENST00000441802	NM_005245.3	1304	Ccg/Tcg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	77	262	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177119	112177119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	268	433	0	ENST00000257430.4:c.5828G>A	p.Arg1943Lys	p.R1943K	ENST00000257430	NM_000038.5	1943	aGa/aAa																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30681787	30681787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	459	390	0	ENST00000376406.3:c.310C>T	p.Pro104Ser	p.P104S	ENST00000376406	NM_014641.2	104	Cct/Tct																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32187944	32187944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	377	431	0	ENST00000375023.3:c.1277G>A	p.Gly426Glu	p.G426E	ENST00000375023	NM_004557.3	426	gGg/gAg																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50444346	50444346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	333	301	0	ENST00000331340.3:c.276G>A	p.Met92Ile	p.M92I	ENST00000331340	NM_006060.4	92	atG/atA																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50455151	50455151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	224	203	0	ENST00000331340.3:c.698C>T	p.Pro233Leu	p.P233L	ENST00000331340	NM_006060.4	233	cCg/cTg																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116339799	116339799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	972	466	0	ENST00000397752.3:c.661G>A	p.Glu221Lys	p.E221K	ENST00000397752	NM_000245.2	221	Gaa/Aaa																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	552	318	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140476853	140476853	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	111	340	0	ENST00000288602.6:c.1553G>C	p.Gly518Ala	p.G518A	ENST00000288602	NM_004333.4	518	gGc/gCc																																												NEWRECORD																																		
PTPRD	5789	MSKCC	GRCh37	9	8436600	8436600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs888423638		P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	331	342	0	ENST00000356435.5:c.4078G>A	p.Glu1360Lys	p.E1360K	ENST00000356435		1360	Gaa/Aaa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8449838	8449838	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	212	227	0	ENST00000356435.5:c.3876-1G>A		p.X1292_splice	ENST00000356435		1292																																													NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249758	110249758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	492	323	0	ENST00000374672.4:c.917C>T	p.Pro306Leu	p.P306L	ENST00000374672	NM_004235.4	306	cCc/cTc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43595997	43595997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	292	390	0	ENST00000355710.3:c.164C>T	p.Ala55Val	p.A55V	ENST00000355710	NM_020975.4	55	gCc/gTc																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100998444	100998444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2174	251	433	1	ENST00000325455.5:c.1358C>T	p.Ser453Phe	p.S453F	ENST00000325455	NM_001202474.3	453	tCc/tTc																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119149009	119149009	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	263	245	0	ENST00000264033.4:c.1227+2T>C		p.X409_splice	ENST00000264033	NM_005188.3	409																																													NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434813	49434813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	378	441	0	ENST00000301067.7:c.6740C>T	p.Pro2247Leu	p.P2247L	ENST00000301067	NM_003482.3	2247	cCc/cTc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56481662	56481662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	990	503	1	ENST00000267101.3:c.697G>A	p.Gly233Arg	p.G233R	ENST00000267101	NM_001982.3	233	Ggg/Agg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42032258	42032258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	751	609	1	ENST00000219905.7:c.4442C>T	p.Ser1481Phe	p.S1481F	ENST00000219905	NM_001164273.1	1481	tCc/tTc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857935	9857935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	204	387	0	ENST00000330684.3:c.3466G>A	p.Glu1156Lys	p.E1156K	ENST00000330684	NM_001134407.1	1156	Gaa/Aaa																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23641767	23641767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	126	280	0	ENST00000261584.4:c.1708G>A	p.Glu570Lys	p.E570K	ENST00000261584	NM_024675.3	570	Gag/Aag																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72923659	72923659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	578	640	0	ENST00000268489.5:c.3419C>T	p.Thr1140Ile	p.T1140I	ENST00000268489	NM_006885.3	1140	aCc/aTc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993367	72993368	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	537	655	0	ENST00000268489.5:c.677_678delinsTT	p.Pro226Leu	p.P226L	ENST00000268489	NM_006885.3	226	cCC/cTT																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29685551	29685551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	479	353	1	ENST00000358273.4:c.8024C>T	p.Pro2675Leu	p.P2675L	ENST00000358273	NM_001042492.2	2675	cCa/cTa																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37884198	37884198	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	391	411	0	ENST00000269571.5:c.3669G>A	p.Trp1223Ter	p.W1223*	ENST00000269571		1223	tgG/tgA																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11098441	11098441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	96	339	0	ENST00000344626.4:c.959C>T	p.Pro320Leu	p.P320L	ENST00000344626	NM_003072.3	320	cCc/cTc																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9561235	9561235	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	436	406	0	ENST00000353224.5:c.547T>G	p.Ser183Ala	p.S183A	ENST00000353224	NM_177990.2	183	Tct/Gct																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40735461	40735461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	455	498	0	ENST00000373198.4:c.3412C>T	p.Leu1138Phe	p.L1138F	ENST00000373198	NM_133170.3	1138	Ctc/Ttc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40899066	40899066	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199994862		P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	474	591	3	ENST00000373198.4:c.2204C>T	p.Pro735Leu	p.P735L	ENST00000373198	NM_133170.3	735	cCg/cTg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40980745	40980745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	307	354	0	ENST00000373198.4:c.1741C>T	p.Arg581Trp	p.R581W	ENST00000373198	NM_133170.3	581	Cgg/Tgg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41100947	41100947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	319	335	0	ENST00000373198.4:c.1409G>A	p.Arg470Gln	p.R470Q	ENST00000373198	NM_133170.3	470	cGa/cAa																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41543904	41543904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	629	524	0	ENST00000263253.7:c.2195C>G	p.Pro732Arg	p.P732R	ENST00000263253	NM_001429.3	732	cCt/cGt																																												NEWRECORD																																		
ARAF	0	MSKCC	GRCh37	X	47424260	47424260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	450	263	0	ENST00000377045.4:c.265G>A	p.Glu89Lys	p.E89K	ENST00000377045	NM_001654.4	89	Gag/Aag																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63410358	63410358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	503	336	1	ENST00000330258.3:c.2809G>A	p.Glu937Lys	p.E937K	ENST00000330258	NM_152424.3	937	Gaa/Aaa																																												NEWRECORD																																		
STK40	0	MSKCC	GRCh37	1	36819925	36819967	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCCGGGGTAACTGTATGGATGTAGAGACAGGGATCTTACCTC	CCCCGGGGTAACTGTATGGATGTAGAGACAGGGATCTTACCTC	-			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	155	423	0	ENST00000373129.3:c.621_623+40del		p.X207_splice	ENST00000373129	NM_032017.1	207																																													NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1625579	1625605	+	inframe_deletion	In_Frame_Del	DEL	GCTGCCGTCTGCCGCTCTCCGCCGGGA	GCTGCCGTCTGCCGCTCTCCGCCGGGA	-			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	191	555	0	ENST00000344749.5:c.469_495del	p.Ser157_Ser165del	p.S157_S165del	ENST00000344749	NM_001136139.2	157	TCCCGGCGGAGAGCGGCAGACGGCAGC/-																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187524119	187524121	+	frameshift_variant	Frame_Shift_Del	DEL	GAC	GAC	A			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	172	409	0	ENST00000441802.2:c.11418_11420delinsT	p.Ser3807Ter	p.S3807*	ENST00000441802	NM_005245.3	3806	gtGTCt/gtTt																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206652329	206652330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	373	464	1	ENST00000367120.3:c.1042dup	p.Arg348ProfsTer8	p.R348Pfs*8	ENST00000367120	NM_014002.3	346	gcc/gCcc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15950405	15950412	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCCTGTT	TTCCTGTT	-			P-0012361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	285	372	0	ENST00000268712.3:c.6537-5_6539del		p.X2179_splice	ENST00000268712	NM_006311.3	2179																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	397	394	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	256	662	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	213	492	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	209	458	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	480	448	0	ENST00000359013.4:c.1658G>T	p.Arg553Leu	p.R553L	ENST00000359013	NM_001024847.2	553	cGt/cTt																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176722431	176722431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	208	547	0	ENST00000439151.2:c.8062C>T	p.His2688Tyr	p.H2688Y	ENST00000439151	NM_022455.4	2688	Cac/Tac																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553533	106553533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	122	255	0	ENST00000369096.4:c.1498G>A	p.Gly500Arg	p.G500R	ENST00000369096	NM_001198.3	500	Ggg/Agg																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72076826	72076826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	204	383	2	ENST00000357731.5:c.671C>T	p.Ala224Val	p.A224V	ENST00000357731	NM_173808.2	224	gCt/gTt																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66286209	66286209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	236	541	2	ENST00000273854.3:c.1477G>T	p.Asp493Tyr	p.D493Y	ENST00000273854	NM_004439.5	493	Gat/Tat																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56488229	56488229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	407	486	0	ENST00000267101.3:c.1748C>T	p.Pro583Leu	p.P583L	ENST00000267101	NM_001982.3	583	cCc/cTc																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67063331	67063331	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	101	295	0	ENST00000412916.2:c.21C>G	p.Asp7Glu	p.D7E	ENST00000412916		7	gaC/gaG																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120472	70120473	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	216	531	0	ENST00000245479.2:c.1477dup	p.His493ProfsTer85	p.H493Pfs*85	ENST00000245479	NM_000346.3	492	acc/aCcc																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176517540	176517540	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001381-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	86	388	0	ENST00000292408.4:c.241G>T	p.Gly81Cys	p.G81C	ENST00000292408	NM_213647.1	81	Ggc/Tgc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151845223	151845223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001381-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	123	261	0	ENST00000262189.6:c.13789C>T	p.Arg4597Cys	p.R4597C	ENST00000262189	NM_170606.2	4597	Cgc/Tgc																																												NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128750683	128750683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001381-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	537	509	1	ENST00000377970.2:c.220C>T	p.Pro74Ser	p.P74S	ENST00000377970	NM_002467.4	74	Ccg/Tcg																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88679165	88679165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001381-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	17	113	0	ENST00000372037.3:c.1105C>T	p.Leu369Phe	p.L369F	ENST00000372037	NM_004329.2	369	Ctc/Ttc																																												NEWRECORD																																		
MRE11A	0	MSKCC	GRCh37	11	94197307	94197307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001381-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	121	482	0	ENST00000323929.3:c.1197C>G	p.Phe399Leu	p.F399L	ENST00000323929	NM_005591.3	399	ttC/ttG																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001381-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	106	505	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0001381-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	138	400	0	ENST00000326873.7:c.734+1G>A		p.X245_splice	ENST00000326873	NM_000455.4	245																																													NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546546	9546546	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001381-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	87	328	0	ENST00000353224.5:c.1476C>G	p.Phe492Leu	p.F492L	ENST00000353224	NM_177990.2	492	ttC/ttG																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9560947	9560947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001381-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	178	382	0	ENST00000353224.5:c.835C>A	p.Gln279Lys	p.Q279K	ENST00000353224	NM_177990.2	279	Cag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579463	7579464	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001381-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	42	213	0	ENST00000269305.4:c.223_224insT	p.Pro75LeufsTer74	p.P75Lfs*74	ENST00000269305	NM_001126112.2	75	cct/cTct																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215645738	215645738	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	18	394	0	ENST00000260947.4:c.860A>C	p.Glu287Ala	p.E287A	ENST00000260947	NM_000465.2	287	gAg/gCg																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180046053	180046053	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	15	232	0	ENST00000261937.6:c.2818C>A	p.Arg940Ser	p.R940S	ENST00000261937	NM_182925.4	940	Cgc/Agc																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553561	106553561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	28	253	0	ENST00000369096.4:c.1526C>A	p.Ala509Asp	p.A509D	ENST00000369096	NM_001198.3	509	gCc/gAc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49436112	49436112	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	10	101	0	ENST00000301067.7:c.5869G>T	p.Glu1957Ter	p.E1957*	ENST00000301067	NM_003482.3	1957	Gag/Tag																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133220436	133220436	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	55	403	0	ENST00000320574.5:c.4277T>C	p.Val1426Ala	p.V1426A	ENST00000320574	NM_006231.2	1426	gTa/gCa																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133237688	133237688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	62	520	1	ENST00000320574.5:c.2927G>A	p.Arg976His	p.R976H	ENST00000320574	NM_006231.2	976	cGc/cAc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602872	10602872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	95	522	2	ENST00000171111.5:c.706G>A	p.Asp236Asn	p.D236N	ENST00000171111	NM_203500.1	236	Gac/Aac																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31368244	31368244	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	35	424	0	ENST00000328111.2:c.115G>T	p.Glu39Ter	p.E39*	ENST00000328111	NM_006892.3	39	Gag/Tag																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29092948	29092948	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	38	530	0	ENST00000328354.6:c.1036C>G	p.Arg346Gly	p.R346G	ENST00000328354	NM_007194.3	346	Cgt/Ggt																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63810748	63810749	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	20	334	0	ENST00000279873.7:c.837dup	p.Val280ArgfsTer7	p.V280Rfs*7	ENST00000279873	NM_032199.2	279	gcc/gCcc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578473	7578474	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	47	487	0	ENST00000269305.4:c.456dup	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	-/G																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66231723	66231724	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0006540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	17	455	1	ENST00000273854.3:c.1976_1977delinsAA	p.Pro659Gln	p.P659Q	ENST00000273854	NM_004439.5	659	cCC/cAA																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	169	190	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	290	182	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52437782	52437782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	632	344	0	ENST00000460680.1:c.1379C>G	p.Ser460Ter	p.S460*	ENST00000460680	NM_004656.3	460	tCa/tGa																																												NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	354	407	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150022917	150022917	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	361	190	0	ENST00000253339.5:c.346G>C	p.Glu116Gln	p.E116Q	ENST00000253339		116	Gag/Cag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44923060	44923060	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	440	110	0	ENST00000377967.4:c.1921C>T	p.Gln641Ter	p.Q641*	ENST00000377967	NM_021140.2	641	Cag/Tag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100871	27100871	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	284	332	1	ENST00000324856.7:c.4153G>T	p.Glu1385Ter	p.E1385*	ENST00000324856	NM_006015.4	1385	Gaa/Taa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101705	27101705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	233	216	0	ENST00000324856.7:c.4987G>C	p.Asp1663His	p.D1663H	ENST00000324856	NM_006015.4	1663	Gac/Cac																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164906	47164906	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	186	224	0	ENST00000409792.3:c.1220C>G	p.Ser407Cys	p.S407C	ENST00000409792	NM_014159.6	407	tCt/tGt																																												NEWRECORD																																		
HIST1H3D	0	MSKCC	GRCh37	6	26197427	26197427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1844	350	487	5	ENST00000356476.2:c.52C>T	p.Arg18Cys	p.R18C	ENST00000356476		18	Cgc/Tgc																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149983131	149983131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	277	288	0	ENST00000253339.5:c.3127G>A	p.Asp1043Asn	p.D1043N	ENST00000253339		1043	Gat/Aat																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	149983140	149983140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	274	298	0	ENST00000253339.5:c.3118G>A	p.Asp1040Asn	p.D1040N	ENST00000253339		1040	Gat/Aat																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90628510	90628510	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1171	90	283	0	ENST00000330062.3:c.1077G>C	p.Gln359His	p.Q359H	ENST00000330062	NM_002168.2	359	caG/caC																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57484251	57484251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	152	259	0	ENST00000371085.3:c.565G>A	p.Asp189Asn	p.D189N	ENST00000371085	NM_000516.4	189	Gac/Aac																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29130454	29130454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	243	302	0	ENST00000328354.6:c.256G>C	p.Glu86Gln	p.E86Q	ENST00000328354	NM_007194.3	86	Gag/Cag																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41533795	41533795	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	224	242	0	ENST00000263253.7:c.1760+1G>A		p.X587_splice	ENST00000263253	NM_001429.3	587																																													NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27087393	27087394	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	312	353	0	ENST00000324856.7:c.1969_1970del	p.Leu657GlufsTer18	p.L657Efs*18	ENST00000324856	NM_006015.4	656	gCT/g																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061229	38061230	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	279	275	0	ENST00000250448.2:c.759dup	p.Phe254ValfsTer39	p.F254Vfs*39	ENST00000250448	NM_004496.3	253	-/G																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244878	46244878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003019-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			577	162	762	0	ENST00000334344.6:c.2972C>T	p.Ser991Phe	p.S991F	ENST00000334344	NM_152641.2	991	tCc/tTc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245449	46245449	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003019-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	105	435	0	ENST00000334344.6:c.3543T>G	p.Ser1181Arg	p.S1181R	ENST00000334344	NM_152641.2	1181	agT/agG																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55602886	55602887	+	inframe_insertion,splice_region_variant	In_Frame_Ins	INS	-	-	GAAGCA			P-0003019-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			655	114	461	0	ENST00000288135.5:c.2598_2603dup	p.Ser867_Ser868insArgSer	p.S867_S868insRS	ENST00000288135	NM_000222.2	866	gga/gGAAGCAga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101625	27101625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	107	362	1	ENST00000324856.7:c.4907G>T	p.Arg1636Leu	p.R1636L	ENST00000324856	NM_006015.4	1636	cGg/cTg																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178097272	178097272	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			3117	351	378	0	ENST00000397062.3:c.442C>G	p.Pro148Ala	p.P148A	ENST00000397062	NM_006164.4	148	Ccc/Gcc																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2963931	2963931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1266	676	485	1	ENST00000396946.4:c.1876G>T	p.Glu626Ter	p.E626*	ENST00000396946	NM_032415.4	626	Gag/Tag																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152345926	152345926	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1623	502	641	3	ENST00000359321.1:c.644G>T	p.Arg215Leu	p.R215L	ENST00000359321	NM_005431.1	215	cGa/cTa																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123325072	123325072	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	226	533	0	ENST00000358487.5:c.256G>T	p.Val86Leu	p.V86L	ENST00000358487	NM_000141.4	86	Gtg/Ttg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108216533	108216533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	257	558	0	ENST00000278616.4:c.8482C>T	p.Gln2828Ter	p.Q2828*	ENST00000278616	NM_000051.3	2828	Caa/Taa																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			905	344	423	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426738	49426738	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			333	114	103	0	ENST00000301067.7:c.11750A>G	p.Gln3917Arg	p.Q3917R	ENST00000301067	NM_003482.3	3917	cAg/cGg																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81609750	81609750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1194	324	432	0	ENST00000298171.2:c.1348C>A	p.Arg450Ser	p.R450S	ENST00000298171	NM_000369.2	450	Cgc/Agc																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			789	248	246	2	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			604	281	377	2	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1219341	1219341	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			637	325	355	0	ENST00000326873.7:c.393C>A	p.Tyr131Ter	p.Y131*	ENST00000326873	NM_000455.4	131	taC/taA																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41527514	41527514	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			680	461	386	1	ENST00000263253.7:c.1405G>T	p.Ala469Ser	p.A469S	ENST00000263253	NM_001429.3	469	Gca/Tca																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81332004	81332005	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001830-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	412	554	0	ENST00000222390.5:c.2079dup	p.Gly694TrpfsTer31	p.G694Wfs*31	ENST00000222390	NM_000601.4	693	-/T																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002387-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	288	337	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002387-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			161	217	232	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
GATA3	2625	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002387-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	236	433	0	ENST00000346208.3:c.1221dup	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcGg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27089705	27089706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs1286891446		P-0013432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	128	480	0	ENST00000324856.7:c.2666dup	p.Met890HisfsTer46	p.M890Hfs*46	ENST00000324856	NM_006015.4	887	-/G																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149436860	149436860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	104	592	0	ENST00000286301.3:c.2309C>A	p.Ala770Asp	p.A770D	ENST00000286301	NM_005211.3	770	gCt/gAt																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64573226	64573226	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	206	706	0	ENST00000337652.1:c.1081G>T	p.Glu361Ter	p.E361*	ENST00000337652	NM_130803.2	361	Gaa/Taa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56155649	56155658	+	frameshift_variant	Frame_Shift_Del	DEL	CCGACGCAGT	CCGACGCAGT	-			P-0013432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	252	417	0	ENST00000399503.3:c.743_752del	p.Arg248LeufsTer12	p.R248Lfs*12	ENST00000399503	NM_005921.1	247	ggCCGACGCAGT/gg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	125	376	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	249	470	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	162	273	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175530	112175530	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	137	446	0	ENST00000257430.4:c.4240del	p.Val1414Ter	p.V1414*	ENST00000257430	NM_000038.5	1413	atG/at																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173926	112173926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	124	409	1	ENST00000257430.4:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000257430	NM_000038.5	879	Cag/Tag																																												NEWRECORD																																		
BCL2	0	MSKCC	GRCh37	18	60985385	60985385	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	119	775	1	ENST00000333681.4:c.515A>G	p.Asn172Ser	p.N172S	ENST00000333681		172	aAc/aGc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11170729	11170729	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	336	686	0	ENST00000344626.4:c.4777G>A	p.Val1593Ile	p.V1593I	ENST00000344626	NM_003072.3	1593	Gtc/Atc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52623069	52623160	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTAAAACAAACTTACCAGCTGAATCCTCCCACAGTCTTTCAATACAGACGATATGTGGTTGTAGGTTGGCCTCTGCAGGTTCCACATAGA	ATTTAAAACAAACTTACCAGCTGAATCCTCCCACAGTCTTTCAATACAGACGATATGTGGTTGTAGGTTGGCCTCTGCAGGTTCCACATAGA	-			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	109	357	0	ENST00000394830.3:c.2891_2965+17del		p.X964_splice	ENST00000394830	NM_018313.4	964																																													NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31023045	31023046	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	475	593	0	ENST00000375687.4:c.2535dup	p.Ser846GlnfsTer5	p.S846Qfs*5	ENST00000375687	NM_015338.5	844	acc/aCcc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	71	307	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	71	307	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187509826	187509826	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	43	210	1	ENST00000441802.2:c.13687G>T	p.Asp4563Tyr	p.D4563Y	ENST00000441802	NM_005245.3	4563	Gac/Tac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539387	187539387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	53	329	0	ENST00000441802.2:c.8353G>A	p.Asp2785Asn	p.D2785N	ENST00000441802	NM_005245.3	2785	Gat/Aat																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38273452	38273452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1154	218	551	1	ENST00000425967.3:c.1883C>T	p.Ser628Phe	p.S628F	ENST00000425967	NM_001174067.1	628	tCc/tTc																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97887428	97887428	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	185	363	0	ENST00000289081.3:c.936A>G	p.Ile312Met	p.I312M	ENST00000289081	NM_000136.2	312	atA/atG																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98224281	98224281	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	43	225	0	ENST00000331920.6:c.2561-1G>A		p.X854_splice	ENST00000331920	NM_000264.3	854																																													NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39923196	39923196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	55	203	0	ENST00000378444.4:c.3512C>A	p.Pro1171His	p.P1171H	ENST00000378444	NM_001123385.1	1171	cCt/cAt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106196594	106196595	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	82	366	0	ENST00000380013.4:c.4931dup	p.Tyr1645IlefsTer16	p.Y1645Ifs*16	ENST00000380013	NM_001127208.2	1643	tcc/tCcc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593655	55593656	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACAACTTCCTTATGAACA			P-0007646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	230	275	0	ENST00000288135.5:c.1736_1737insACAACAACTTCCTTATGA	p.Tyr578_Asp579insGluGlnGlnLeuProTyr	p.Y578_D579insEQQLPY	ENST00000288135	NM_000222.2	574	aca/acACAACTTCCTTATGAACAa																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	105	235	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	80	213	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	42	96	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	108	288	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578213	7578214	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-	rs1131691030		P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	147	298	0	ENST00000269305.4:c.635_636del	p.Phe212SerfsTer3	p.F212Sfs*3	ENST00000269305	NM_001126112.2	212	tTT/t																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45368208	45368208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	146	212	0	ENST00000262160.6:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000262160	NM_005901.5	465	aGc/aAc																																												NEWRECORD																																		
ALK	238	MSKCC	GRCh37	2	30143044	30143044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	134	277	0	ENST00000389048.3:c.482C>T	p.Ala161Val	p.A161V	ENST00000389048	NM_004304.4	161	gCg/gTg																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	70014214	70014214	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	154	431	0	ENST00000352241.4:c.1378G>C	p.Glu460Gln	p.E460Q	ENST00000352241	NM_198159.2	460	Gag/Cag																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	39074223	39074223	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	70	136	0	ENST00000357387.3:c.87T>A	p.Asp29Glu	p.D29E	ENST00000357387	NM_152756.3	29	gaT/gaA																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173578	112173578	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	86	258	0	ENST00000257430.4:c.2287G>T	p.Glu763Ter	p.E763*	ENST00000257430	NM_000038.5	763	Gaa/Taa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176684080	176684080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	38	298	0	ENST00000439151.2:c.4894G>T	p.Gly1632Cys	p.G1632C	ENST00000439151	NM_022455.4	1632	Ggc/Tgc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720650	89720650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	30	73	0	ENST00000371953.3:c.802-1G>A		p.X268_splice	ENST00000371953	NM_000314.4	268																																													NEWRECORD																																		
LMO1	0	MSKCC	GRCh37	11	8251846	8251846	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	27	229	0	ENST00000335790.3:c.231C>G	p.Asp77Glu	p.D77E	ENST00000335790	NM_002315.2	77	gaC/gaG																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46254723	46254723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	69	263	0	ENST00000334344.6:c.4913C>G	p.Ser1638Cys	p.S1638C	ENST00000334344	NM_152641.2	1638	tCt/tGt																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3786715	3786715	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	46	372	0	ENST00000262367.5:c.4496T>A	p.Leu1499Gln	p.L1499Q	ENST00000262367	NM_004380.2	1499	cTg/cAg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81927367	81927367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	171	304	0	ENST00000359376.3:c.1040G>A	p.Arg347His	p.R347H	ENST00000359376	NM_002661.3	347	cGc/cAc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916922	178916927	+	inframe_deletion	In_Frame_Del	DEL	ACCAGT	ACCAGT	-			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	145	386	0	ENST00000263967.3:c.310_315del	p.Pro104_Val105del	p.P104_V105del	ENST00000263967	NM_006218.2	103	gaACCAGTa/gaa																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63554485	63554486	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGG			P-0005003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	177	253	0	ENST00000307078.5:c.251_253dup	p.Ser84dup	p.S84dup	ENST00000307078	NM_004655.3	84	tta/tCCTta																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	79	257	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89528588	89528588	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	47	257	0	ENST00000336596.2:c.2888A>T	p.Lys963Met	p.K963M	ENST00000336596	NM_005233.5	963	aAg/aTg																																												NEWRECORD																																		
FOXL2	0	MSKCC	GRCh37	3	138665210	138665210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	99	321	0	ENST00000330315.3:c.355G>T	p.Gly119Cys	p.G119C	ENST00000330315	NM_023067.3	119	Ggc/Tgc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178951894	178951894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	59	268	0	ENST00000263967.3:c.2949G>A	p.Met983Ile	p.M983I	ENST00000263967	NM_006218.2	983	atG/atA																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55143565	55143565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	99	277	0	ENST00000257290.5:c.1797G>T	p.Leu599Phe	p.L599F	ENST00000257290	NM_006206.4	599	ttG/ttT																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55155282	55155282	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	46	206	0	ENST00000257290.5:c.2880+1G>T		p.X960_splice	ENST00000257290	NM_006206.4	960																																													NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153247271	153247271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	188	340	0	ENST00000281708.4:c.1531G>T	p.Gly511Cys	p.G511C	ENST00000281708	NM_033632.3	511	Ggc/Tgc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180036016	180036016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	89	341	0	ENST00000261937.6:c.3845A>G	p.Glu1282Gly	p.E1282G	ENST00000261937	NM_182925.4	1282	gAg/gGg																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133759580	133759580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	81	317	0	ENST00000318560.5:c.1903G>T	p.Glu635Ter	p.E635*	ENST00000318560	NM_005157.4	635	Gag/Tag																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042160	42042160	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1263	127	519	0	ENST00000219905.7:c.6355G>T	p.Gly2119Ter	p.G2119*	ENST00000219905	NM_001164273.1	2119	Gga/Tga																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72833950	72833950	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	128	343	0	ENST00000268489.5:c.3943T>G	p.Leu1315Val	p.L1315V	ENST00000268489	NM_006885.3	1315	Ttg/Gtg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10600392	10600392	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	175	354	0	ENST00000171111.5:c.1463A>T	p.Glu488Val	p.E488V	ENST00000171111	NM_203500.1	488	gAg/gTg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8436631	8436632	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	80	321	0	ENST00000356435.5:c.4046dup	p.Leu1349PhefsTer5	p.L1349Ffs*5	ENST00000356435		1349	ttg/ttTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	455	565	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110250196	110250196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	53	300	0	ENST00000374672.4:c.479C>T	p.Pro160Leu	p.P160L	ENST00000374672	NM_004235.4	160	cCg/cTg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42059371	42059371	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	265	780	2	ENST00000219905.7:c.9091A>G	p.Thr3031Ala	p.T3031A	ENST00000219905	NM_001164273.1	3031	Aca/Gca																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857020	9857020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	212	686	1	ENST00000330684.3:c.4381G>A	p.Glu1461Lys	p.E1461K	ENST00000330684	NM_001134407.1	1461	Gaa/Aaa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49432412	49432413	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	155	599	0	ENST00000301067.7:c.8726dup	p.Ser2910LysfsTer2	p.S2910Kfs*2	ENST00000301067	NM_003482.3	2909	gta/gtTa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	234	411	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100922293	100922293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149186732		P-0014801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	151	274	0	ENST00000325455.5:c.2219G>A	p.Arg740Gln	p.R740Q	ENST00000325455	NM_001202474.3	740	cGa/cAa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151878785	151878785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			607	183	335	0	ENST00000262189.6:c.6160C>T	p.Gln2054Ter	p.Q2054*	ENST00000262189	NM_170606.2	2054	Cag/Tag																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115718	8115719	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014801-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	62	366	0	ENST00000346208.3:c.1065dup	p.Met356TyrfsTer15	p.M356Yfs*15	ENST00000346208		355	act/acTt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	45	484	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143324117	143324117	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	24	353	0	ENST00000262992.4:c.346G>C	p.Asp116His	p.D116H	ENST00000262992	NM_001101669.1	116	Gat/Cat																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133220563	133220563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0007546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	24	266	1	ENST00000320574.5:c.4150G>T	p.Val1384Leu	p.V1384L	ENST00000320574	NM_006231.2	1384	Gta/Tta																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123196792	123196792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	41	429	0	ENST00000218089.9:c.1679G>C	p.Arg560Thr	p.R560T	ENST00000218089	NM_001042749.1	560	aGg/aCg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220491	1220492	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	38	523	0	ENST00000326873.7:c.587dup	p.Val197ArgfsTer69	p.V197Rfs*69	ENST00000326873	NM_000455.4	195	ctg/ctGg																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29120965	29120965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			493	217	253	0	ENST00000328354.6:c.592G>C	p.Val198Leu	p.V198L	ENST00000328354	NM_007194.3	198	Gtt/Ctt																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			244	80	210	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578464	7578464	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			390	448	347	0	ENST00000269305.4:c.466delC	p.Arg156AlafsTer14	p.R156Afs*14	ENST00000269305	NM_001126112.2	156	Cgc/gc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			651	96	375	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145737142	145737142	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61755067		P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			597	215	406	0	ENST00000428558.2:c.3424G>A	p.Asp1142Asn	p.D1142N	ENST00000428558	NM_004260.3	1142	Gac/Aac																																												NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	143	566	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89881001	89881001	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			801	337	409	0	ENST00000389301.3:c.210A>T	p.Lys70Asn	p.K70N	ENST00000389301	NM_000135.2	70	aaA/aaT																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175749	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTATTACAT	TACTTTATTACAT	-			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			309	172	245	0	ENST00000257430.4:c.4459_4471delACTTTATTACATT	p.Thr1487LeufsTer16	p.T1487Lfs*16	ENST00000257430	NM_000038.5	1486	gaTACTTTATTACAT/ga																																												NEWRECORD																																		
NKX2-1	0	MSKCC	GRCh37	14	36988224	36988247	+	inframe_deletion	In_Frame_Del	DEL	CCATCCGGGGCCAGAGGCGCTGTT	CCATCCGGGGCCAGAGGCGCTGTT	-			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			179	38	132	0	ENST00000354822.5:c.406_429delAACAGCGCCTCTGGCCCCGGATGG	p.Asn136_Trp143del	p.N136_W143del	ENST00000354822	NM_001079668.2	136	AACAGCGCCTCTGGCCCCGGATGG/-																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17122378	17122379	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			336	414	415	0	ENST00000285071.4:c.1016dupA	p.Pro340AlafsTer50	p.P340Afs*50	ENST00000285071	NM_144997.5	339	cag/caAg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			372	202	266	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8528707	8528707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001500-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			494	91	347	1	ENST00000356435.5:c.425C>T	p.Thr142Met	p.T142M	ENST00000356435		142	aCg/aTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	173	254	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	225	214	0	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	136	268	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47125500	47125500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	493	405	0	ENST00000409792.3:c.5770C>T	p.Gln1924Ter	p.Q1924*	ENST00000409792	NM_014159.6	1924	Cag/Tag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	132	192	0	ENST00000257430.4:c.834+1G>A		p.X278_splice	ENST00000257430	NM_000038.5	278																																													NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138200377	138200377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	148	234	0	ENST00000237289.4:c.1795G>A	p.Gly599Arg	p.G599R	ENST00000237289	NM_001270507.1	599	Ggg/Agg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002048-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	310	264	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	60	246	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140477854	140477854	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	73	442	0	ENST00000288602.6:c.1454T>G	p.Leu485Trp	p.L485W	ENST00000288602	NM_004333.4	485	tTg/tGg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89350985	89350985	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1711	122	724	0	ENST00000301030.4:c.1965A>C	p.Lys655Asn	p.K655N	ENST00000301030	NM_001256183.1	655	aaA/aaC																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76849290	76849290	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	84	530	0	ENST00000373344.5:c.5986A>G	p.Ser1996Gly	p.S1996G	ENST00000373344	NM_000489.3	1996	Agc/Ggc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48573632	48573633	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	39	232	0	ENST00000342988.3:c.217dup	p.Thr73AsnfsTer31	p.T73Nfs*31	ENST00000342988	NM_005359.5	72	-/A																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52637632	52637641	+	protein_altering_variant	In_Frame_Del	DEL	GTGGTATAGC	GTGGTATAGC	ATGTTTT			P-0007360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	71	526	0	ENST00000394830.3:c.2675_2684delinsAAAACAT	p.Ser892_Thr895delinsLysAsnIle	p.S892_T895delinsKNI	ENST00000394830	NM_018313.4	892	aGCTATACCACa/aAAAACATa																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	75	600	1	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38487554	38487554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	277	973	1	ENST00000254066.5:c.89delC	p.Pro30LeufsTer12	p.P30Lfs*12	ENST00000254066	NM_000964.3	28	ttC/tt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	55	294	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	186	621	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	427	665	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	128	468	4	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	270	848	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43604533	43604533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	207	846	2	ENST00000355710.3:c.1118C>T	p.Ala373Val	p.A373V	ENST00000355710	NM_020975.4	373	gCg/gTg																																												NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	108	574	4	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022442	31022442	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs781077343		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	132	319	6	ENST00000375687.4:c.1934del	p.Gly645ValfsTer58	p.G645Vfs*58	ENST00000375687	NM_015338.5	643	Ggg/gg																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67477184	67477184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	41	455	1	ENST00000327367.4:c.991G>A	p.Val331Ile	p.V331I	ENST00000327367	NM_005902.3	331	Gtc/Atc																																												NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	38	722	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27024002	27024002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	19	164	0	ENST00000324856.7:c.1113del	p.Gln372SerfsTer19	p.Q372Sfs*19	ENST00000324856	NM_006015.4	370	Ggg/gg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29586102	29586102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	98	511	0	ENST00000358273.4:c.4385G>A	p.Arg1462Gln	p.R1462Q	ENST00000358273	NM_001042492.2	1462	cGg/cAg																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180051011	180051011	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146167161		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	47	815	3	ENST00000261937.6:c.1472C>T	p.Ala491Val	p.A491V	ENST00000261937	NM_182925.4	491	gCg/gTg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70405652	70405652	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	118	623	1	ENST00000373644.4:c.3171del	p.Lys1057AsnfsTer25	p.K1057Nfs*25	ENST00000373644	NM_030625.2	1056	Aaa/aa																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	228	695	0	ENST00000281708.4:c.1514G>T	p.Arg505Leu	p.R505L	ENST00000281708	NM_033632.3	505	cGc/cTc																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93606273	93606273	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	140	803	0	ENST00000375746.1:c.98delG	p.Gly33AlafsTer2	p.G33Afs*2	ENST00000375746	NM_001174167.1	31	caG/ca																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133202738	133202738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	228	691	0	ENST00000320574.5:c.6496G>T	p.Asp2166Tyr	p.D2166Y	ENST00000320574	NM_006231.2	2166	Gac/Tac																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248325	59248325	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	30	169	0	ENST00000371222.2:c.418del	p.Ala140GlnfsTer8	p.A140Qfs*8	ENST00000371222	NM_002228.3	140	Gca/ca																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25470551	25470551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	244	720	2	ENST00000264709.3:c.923G>A	p.Gly308Asp	p.G308D	ENST00000264709	NM_175629.2	308	gGc/gAc																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	76	385	1	ENST00000374542.5:c.767G>A	p.Arg256His	p.R256H	ENST00000374542	NM_001141970.1	256	cGc/cAc																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114925317	114925318	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	236	1059	0	ENST00000543371.1:c.1402_1403del	p.Lys468ValfsTer8	p.K468Vfs*8	ENST00000543371	NM_001198531.1	465	agAAaa/agaa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16256321	16256321	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	142	513	0	ENST00000375759.3:c.3591del	p.Asp1198MetfsTer2	p.D1198Mfs*2	ENST00000375759	NM_015001.2	1196	Aaa/aa																																												NEWRECORD																																		
STK40	0	MSKCC	GRCh37	1	36820970	36820970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	243	870	0	ENST00000373129.3:c.407G>A	p.Arg136His	p.R136H	ENST00000373129	NM_032017.1	136	cGc/cAc																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193094322	193094322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	230	551	0	ENST00000367435.3:c.212A>G	p.His71Arg	p.H71R	ENST00000367435	NM_024529.4	71	cAt/cGt																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70404897	70404897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	151	539	1	ENST00000373644.4:c.2411T>C	p.Met804Thr	p.M804T	ENST00000373644	NM_030625.2	804	aTg/aCg																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88683175	88683175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	104	281	0	ENST00000372037.3:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000372037	NM_004329.2	462	cCg/cTg																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64138902	64138902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	50	595	1	ENST00000334205.4:c.2269G>A	p.Ala757Thr	p.A757T	ENST00000334205	NM_003942.2	757	Gcc/Acc																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100999601	100999601	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	321	1300	0	ENST00000325455.5:c.201G>T	p.Gln67His	p.Q67H	ENST00000325455	NM_001202474.3	67	caG/caT																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49432461	49432461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	163	1003	0	ENST00000301067.7:c.8678C>T	p.Thr2893Ile	p.T2893I	ENST00000301067	NM_003482.3	2893	aCt/aTt																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56482642	56482642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	201	676	1	ENST00000267101.3:c.1099G>A	p.Gly367Ser	p.G367S	ENST00000267101	NM_001982.3	367	Ggc/Agc																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134600	41134600	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	361	1406	0	ENST00000379561.5:c.1028T>C	p.Val343Ala	p.V343A	ENST00000379561	NM_002015.3	343	gTg/gCg																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95579427	95579429	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACA	ACA	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	126	413	0	ENST00000343455.3:c.2040_2040+2del		p.X680_splice	ENST00000343455	NM_177438.2	680																																													NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857428	9857428	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	188	764	0	ENST00000330684.3:c.3973del	p.Tyr1325ThrfsTer72	p.Y1325Tfs*72	ENST00000330684	NM_001134407.1	1325	Tac/ac																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23646215	23646215	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	282	916	0	ENST00000261584.4:c.1652A>G	p.Tyr551Cys	p.Y551C	ENST00000261584	NM_024675.3	551	tAt/tGt																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89839751	89839751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	53	952	2	ENST00000389301.3:c.1942G>A	p.Glu648Lys	p.E648K	ENST00000389301	NM_000135.2	648	Gag/Aag																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15974830	15974830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	212	724	0	ENST00000268712.3:c.4045C>T	p.Arg1349Cys	p.R1349C	ENST00000268712	NM_006311.3	1349	Cgt/Tgt																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37865618	37865618	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	302	932	1	ENST00000269571.5:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269571		163	Tac/Cac																																												NEWRECORD																																		
RARA	5914	MSKCC	GRCh37	17	38512370	38512370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	109	600	2	ENST00000254066.5:c.1286del	p.Gly429ValfsTer214	p.G429Vfs*214	ENST00000254066	NM_000964.3	427	ccG/cc																																												NEWRECORD																																		
SRSF2	0	MSKCC	GRCh37	17	74732956	74732956	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	209	648	2	ENST00000359995.5:c.287delC	p.Pro96ArgfsTer136	p.P96Rfs*136	ENST00000359995	NM_001195427.1	96	cCg/cg																																												NEWRECORD																																		
BCL2	0	MSKCC	GRCh37	18	60985776	60985776	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	143	415	3	ENST00000333681.4:c.124del	p.Ala42ProfsTer54	p.A42Pfs*54	ENST00000333681		42	Gcc/cc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15281155	15281155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	191	866	0	ENST00000263388.2:c.5101G>A	p.Ala1701Thr	p.A1701T	ENST00000263388	NM_000435.2	1701	Gcg/Acg																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15355128	15355128	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	113	634	0	ENST00000263377.2:c.2495A>C	p.Gln832Pro	p.Q832P	ENST00000263377	NM_058243.2	832	cAg/cCg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42792016	42792016	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	213	808	0	ENST00000575354.2:c.820C>T	p.Arg274Ter	p.R274*	ENST00000575354	NM_015125.3	274	Cga/Tga																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204732667	204732667	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	36	557	0	ENST00000302823.3:c.2T>C	p.Met1?	p.M1?	ENST00000302823	NM_005214.4	1	aTg/aCg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251713	212251713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	54	630	0	ENST00000342788.4:c.3346G>T	p.Ala1116Ser	p.A1116S	ENST00000342788	NM_005235.2	1116	Gca/Tca																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41523692	41523692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	268	883	0	ENST00000263253.7:c.1108C>T	p.Arg370Cys	p.R370C	ENST00000263253	NM_001429.3	370	Cgc/Tgc																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41564766	41564766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	64	864	2	ENST00000263253.7:c.4067G>A	p.Arg1356Gln	p.R1356Q	ENST00000263253	NM_001429.3	1356	cGa/cAa																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259635	89259635	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	26	282	0	ENST00000336596.2:c.779A>G	p.Asn260Ser	p.N260S	ENST00000336596	NM_005233.5	260	aAt/aGt																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138403527	138403527	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140578043		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	267	911	1	ENST00000289153.2:c.2255G>A	p.Arg752Gln	p.R752Q	ENST00000289153	NM_006219.2	752	cGg/cAg																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189582134	189582135	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	209	684	0	ENST00000264731.3:c.699dupA	p.Ala234SerfsTer2	p.A234Sfs*2	ENST00000264731	NM_003722.4	231	-/A																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55561861	55561861	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201872586		P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	126	676	0	ENST00000288135.5:c.251C>T	p.Thr84Met	p.T84M	ENST00000288135	NM_000222.2	84	aCg/aTg																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156217	106156218	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	34	570	0	ENST00000380013.4:c.1120_1121del	p.Asn374Ter	p.N374*	ENST00000380013	NM_001127208.2	373	cAA/c																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106157059	106157060	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	225	963	0	ENST00000380013.4:c.1965dup	p.Pro656ThrfsTer25	p.P656Tfs*25	ENST00000380013	NM_001127208.2	654	caa/cAaa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176909	112176909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	44	599	0	ENST00000257430.4:c.5618A>G	p.Asp1873Gly	p.D1873G	ENST00000257430	NM_000038.5	1873	gAc/gGc																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176524541	176524541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	250	1009	3	ENST00000292408.4:c.2273G>A	p.Arg758His	p.R758H	ENST00000292408	NM_213647.1	758	cGc/cAc																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112015676	112015676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	315	1098	2	ENST00000368678.4:c.1166G>A	p.Arg389Gln	p.R389Q	ENST00000368678		389	cGa/cAa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151878928	151878928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	100	613	0	ENST00000262189.6:c.6017A>G	p.His2006Arg	p.H2006R	ENST00000262189	NM_170606.2	2006	cAc/cGc																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98211575	98211575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	35	582	0	ENST00000331920.6:c.3580C>T	p.Pro1194Ser	p.P1194S	ENST00000331920	NM_000264.3	1194	Ccc/Tcc																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98241381	98241381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	151	638	0	ENST00000331920.6:c.1116G>A	p.Met372Ile	p.M372I	ENST00000331920	NM_000264.3	372	atG/atA																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101900204	101900204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	303	808	0	ENST00000374994.4:c.638A>G	p.Lys213Arg	p.K213R	ENST00000374994	NM_004612.2	213	aAa/aGa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	299	389	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66242723	66242723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	135	731	0	ENST00000273854.3:c.1849C>A	p.Leu617Ile	p.L617I	ENST00000273854	NM_004439.5	617	Cta/Ata																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828792	72828792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	341	991	0	ENST00000268489.5:c.7789C>A	p.Pro2597Thr	p.P2597T	ENST00000268489	NM_006885.3	2597	Cca/Aca																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245609	46245609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	221	625	0	ENST00000334344.6:c.3707del	p.Pro1236HisfsTer7	p.P1236Hfs*7	ENST00000334344	NM_152641.2	1235	Ccc/cc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578231	7578232	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAAT			P-0005855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	181	703	1	ENST00000269305.4:c.614_617dup	p.Asp207PhefsTer3	p.D207Ffs*3	ENST00000269305	NM_001126112.2	206	ttg/ttATTTg																																												NEWRECORD																																		
MYD88	0	MSKCC	GRCh37	3	38180451	38180461	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGACTGCTC	GCCGACTGCTC	-			P-0005855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	141	568	0	ENST00000396334.3:c.300_310del	p.Arg101AlafsTer19	p.R101Afs*19	ENST00000396334	NM_002468.4	100	gGCCGACTGCTC/g																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858332	9858332	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001648-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	66	404	1	ENST00000330684.3:c.3069G>C	p.Gln1023His	p.Q1023H	ENST00000330684	NM_001134407.1	1023	caG/caC																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858599	9858599	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001648-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			822	88	555	0	ENST00000330684.3:c.2802G>T	p.Met934Ile	p.M934I	ENST00000330684	NM_001134407.1	934	atG/atT																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111499	8111500	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0001648-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	207	582	0	ENST00000346208.3:c.987dup	p.Arg330GlufsTer22	p.R330Efs*22	ENST00000346208		329	agg/aGgg																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	122	368	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	146	405	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56440001	56440001	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	411	504	1	ENST00000407977.2:c.591T>A	p.Tyr197Ter	p.Y197*	ENST00000407977		197	taT/taA																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88651959	88651960	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0005996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	81	333	0	ENST00000372037.3:c.308_309del	p.Tyr103Ter	p.Y103*	ENST00000372037	NM_004329.2	102	aaATat/aaat																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120258	70120259	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	192	613	0	ENST00000245479.2:c.1261dupA	p.Ser421LysfsTer157	p.S421Kfs*157	ENST00000245479	NM_000346.3	420	-/A																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29130545	29130545	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	72	536	1	ENST00000328354.6:c.165del	p.Ser56AlafsTer5	p.S56Afs*5	ENST00000328354	NM_007194.3	55	tcC/tc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	93	336	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156846307	156846307	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	61	405	1	ENST00000524377.1:c.1748G>T	p.Arg583Leu	p.R583L	ENST00000524377	NM_002529.3	583	cGc/cTc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32172127	32172127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	76	392	0	ENST00000375023.3:c.2905C>A	p.Leu969Ile	p.L969I	ENST00000375023	NM_004557.3	969	Ctc/Atc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108224493	108224493	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	32	311	0	ENST00000278616.4:c.8672G>A	p.Gly2891Asp	p.G2891D	ENST00000278616	NM_000051.3	2891	gGt/gAt																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220449	1220449	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	187	446	0	ENST00000326873.7:c.542A>G	p.Asn181Ser	p.N181S	ENST00000326873	NM_000455.4	181	aAc/aGc																																												NEWRECORD																																		
ICOSLG	0	MSKCC	GRCh37	21	45655437	45655437	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	83	188	0	ENST00000407780.3:c.415A>T	p.Ser139Cys	p.S139C	ENST00000407780	NM_001283052.1	139	Agc/Tgc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108235833	108235833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	38	400	1	ENST00000278616.4:c.8875del	p.Asp2959ThrfsTer4	p.D2959Tfs*4	ENST00000278616	NM_000051.3	2959	Gac/ac																																												NEWRECORD																																		
HIST1H3D	0	MSKCC	GRCh37	6	26197275	26197276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1837	134	951	0	ENST00000356476.2:c.203dup	p.Gln69ProfsTer6	p.Q69Pfs*6	ENST00000356476		68	ttc/ttTc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111513	8111514	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	344	647	0	ENST00000346208.3:c.1003dupG	p.Asp335GlyfsTer17	p.D335Gfs*17	ENST00000346208		333	-/G																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89712016	89712019	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTA	AGTA	-			P-0006388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	65	145	0	ENST00000371953.3:c.634+3_634+6delAAGT		p.X212_splice	ENST00000371953	NM_000314.4	212																																													NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0010700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	245	563	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29416646	29416646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	208	405	0	ENST00000389048.3:c.4307G>A	p.Arg1436His	p.R1436H	ENST00000389048	NM_004304.4	1436	cGc/cAc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916917	178916917	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	373	937	1	ENST00000263967.3:c.304A>T	p.Ile102Phe	p.I102F	ENST00000263967	NM_006218.2	102	Att/Ttt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112128166	112128170	+	frameshift_variant	Frame_Shift_Del	DEL	AATCG	AATCG	-			P-0010700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	248	578	0	ENST00000257430.4:c.671_675del	p.Ile224LysfsTer26	p.I224Kfs*26	ENST00000257430	NM_000038.5	223	caAATCGaa/caaa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	41	132	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0005357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	104	422	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30672135	30672135	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	107	411	0	ENST00000376406.3:c.4825C>G	p.Pro1609Ala	p.P1609A	ENST00000376406	NM_014641.2	1609	Cct/Gct																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	396740	396740	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	151	548	1	ENST00000262320.3:c.286C>T	p.Gln96Ter	p.Q96*	ENST00000262320	NM_003502.3	96	Caa/Taa																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67655465	67655465	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	146	562	0	ENST00000264010.4:c.1328A>G	p.Asp443Gly	p.D443G	ENST00000264010	NM_006565.3	443	gAc/gGc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5274251	5274251	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	117	499	0	ENST00000357368.4:c.196T>A	p.Trp66Arg	p.W66R	ENST00000357368	NM_002850.3	66	Tgg/Agg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	143	251	1	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	105	161	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149459777	149459777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	117	186	0	ENST00000286301.3:c.430C>T	p.Arg144Cys	p.R144C	ENST00000286301	NM_005211.3	144	Cgt/Tgt																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67473792	67473792	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	133	152	0	ENST00000327367.4:c.871+1G>T		p.X291_splice	ENST00000327367	NM_005902.3	291																																													NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45375029	45375030	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AGGTTCTGAGT			P-0010673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	98	193	0	ENST00000262160.6:c.803_813dup	p.Ala272ThrfsTer10	p.A272Tfs*10	ENST00000262160	NM_005901.5	271	-/ACTCAGAACCT																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70405943	70405944	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	119	409	0	ENST00000373644.4:c.3461dup	p.Ser1155IlefsTer18	p.S1155Ifs*18	ENST00000373644	NM_030625.2	1153	acc/aCcc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	144	819	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579357	7579358	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGAAAC			P-0011563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	239	466	0	ENST00000269305.4:c.323_329dup	p.Leu111PhefsTer40	p.L111Ffs*40	ENST00000269305	NM_001126112.2	110	cgt/cgGTTTCCGt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	255	374	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
CDKN2B	0	MSKCC	GRCh37	9	22006194	22006194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	68	321	0	ENST00000276925.6:c.209C>T	p.Ala70Val	p.A70V	ENST00000276925	NM_004936.3	70	gCg/gTg																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72799759	72799759	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	134	457	0	ENST00000325599.8:c.1410C>G	p.Asp470Glu	p.D470E	ENST00000325599	NM_018130.2	470	gaC/gaG																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153245452	153245452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	246	420	0	ENST00000281708.4:c.1739A>G	p.His580Arg	p.H580R	ENST00000281708	NM_033632.3	580	cAc/cGc																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95574374	95574379	+	inframe_deletion	In_Frame_Del	DEL	CAACTC	CAACTC	-			P-0011563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	66	317	0	ENST00000343455.3:c.2488_2493del	p.Glu830_Leu831del	p.E830_L831del	ENST00000343455	NM_177438.2	830	GAGTTG/-																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0013600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	94	431	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249002	55249003	+	inframe_insertion	In_Frame_Ins	INS	-	-	CAGCGTGGA			P-0013600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	198	449	0	ENST00000275493.2:c.2303_2311dupGCGTGGACA	p.Ser768_Asp770dup	p.S768_D770dup	ENST00000275493	NM_005228.3	768	gcc/gcCAGCGTGGAc																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1622206	1622206	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	189	640	1	ENST00000344749.5:c.669del	p.Ser224GlnfsTer60	p.S224Qfs*60	ENST00000344749	NM_001136139.2	223	ccC/cc																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131895034	131895034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	111	354	2	ENST00000265335.6:c.188G>T	p.Gly63Val	p.G63V	ENST00000265335		63	gGa/gTa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	18	388	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63700141	63700141	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	36	520	0	ENST00000279873.7:c.476A>T	p.Asp159Val	p.D159V	ENST00000279873	NM_032199.2	159	gAc/gTc																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12016666	12016666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	28	638	0	ENST00000353533.5:c.802C>T	p.Pro268Ser	p.P268S	ENST00000353533	NM_003010.3	268	Cca/Tca																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68835590	68835591	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0010800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	50	836	0	ENST00000261769.5:c.183dup	p.Gly62ArgfsTer32	p.G62Rfs*32	ENST00000261769	NM_004360.3	61	acc/aCcc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	180	596	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	90	407	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	224	530	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2966397	2966397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	22	545	2	ENST00000396946.4:c.1783G>A	p.Gly595Arg	p.G595R	ENST00000396946	NM_032415.4	595	Ggg/Agg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2136380	2136380	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	47	401	0	ENST00000219476.3:c.4849G>C	p.Ala1617Pro	p.A1617P	ENST00000219476	NM_000548.3	1617	Gcc/Ccc																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2138140	2138140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	53	467	0	ENST00000219476.3:c.5160T>G	p.Asn1720Lys	p.N1720K	ENST00000219476	NM_000548.3	1720	aaT/aaG																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56492793	56492793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	154	542	0	ENST00000407977.2:c.146G>A	p.Arg49Lys	p.R49K	ENST00000407977		49	aGa/aAa																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15272201	15272202	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	21	196	0	ENST00000263388.2:c.6237dup	p.Arg2080AlafsTer15	p.R2080Afs*15	ENST00000263388	NM_000435.2	2079	-/G																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	148	133	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	231	465	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	120	431	0	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	12	267	0	ENST00000281708.4:c.1436G>C	p.Arg479Pro	p.R479P	ENST00000281708	NM_033632.3	479	cGa/cCa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	194	283	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434013	49434013	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	77	136	0	ENST00000301067.7:c.7540C>T	p.Gln2514Ter	p.Q2514*	ENST00000301067	NM_003482.3	2514	Cag/Tag																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45867571	45867571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	183	380	0	ENST00000391945.4:c.737C>A	p.Ser246Tyr	p.S246Y	ENST00000391945	NM_000400.3	246	tCc/tAc																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241682980	241682980	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	82	393	0	ENST00000366560.3:c.43G>T	p.Val15Leu	p.V15L	ENST00000366560	NM_000143.3	15	Gtg/Ttg																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72799786	72799786	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	115	344	0	ENST00000325599.8:c.1383C>G	p.Asp461Glu	p.D461E	ENST00000325599	NM_018130.2	461	gaC/gaG																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178921488	178921488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	280	394	0	ENST00000263967.3:c.970A>G	p.Thr324Ala	p.T324A	ENST00000263967	NM_006218.2	324	Aca/Gca																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1280454	1280454	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	63	144	0	ENST00000310581.5:c.1770-1G>T		p.X590_splice	ENST00000310581	NM_198253.2	590																																													NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32188590	32188590	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	201	477	0	ENST00000375023.3:c.865G>C	p.Gly289Arg	p.G289R	ENST00000375023	NM_004557.3	289	Ggc/Cgc																																												NEWRECORD																																		
PIM1	0	MSKCC	GRCh37	6	37138651	37138651	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	189	293	1	ENST00000373509.5:c.185T>C	p.Leu62Ser	p.L62S	ENST00000373509	NM_002648.3	62	tTg/tCg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151864304	151864304	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	211	479	0	ENST00000262189.6:c.9677T>C	p.Phe3226Ser	p.F3226S	ENST00000262189	NM_170606.2	3226	tTt/tCt																																												NEWRECORD																																		
PPP6C	0	MSKCC	GRCh37	9	127923122	127923122	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	155	484	0	ENST00000373547.4:c.235A>G	p.Met79Val	p.M79V	ENST00000373547	NM_002721.4	79	Atg/Gtg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108117782	108117782	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	260	366	0	ENST00000278616.4:c.993G>C	p.Lys331Asn	p.K331N	ENST00000278616	NM_000051.3	331	aaG/aaC																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108141840	108141840	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	127	333	0	ENST00000278616.4:c.2888T>C	p.Met963Thr	p.M963T	ENST00000278616	NM_000051.3	963	aTg/aCg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49047494	49047494	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	229	234	0	ENST00000267163.4:c.2490-2A>G		p.X830_splice	ENST00000267163	NM_000321.2	830																																													NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2122881	2122881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	174	463	0	ENST00000219476.3:c.2252G>A	p.Arg751Gln	p.R751Q	ENST00000219476	NM_000548.3	751	cGa/cAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578440	7578440	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	78	282	0	ENST00000269305.4:c.490A>T	p.Lys164Ter	p.K164*	ENST00000269305	NM_001126112.2	164	Aag/Tag																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15291911	15291911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	166	447	0	ENST00000263388.2:c.2855C>T	p.Pro952Leu	p.P952L	ENST00000263388	NM_000435.2	952	cCc/cTc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42796451	42796451	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	200	250	0	ENST00000575354.2:c.3009-1G>A		p.X1003_splice	ENST00000575354	NM_015125.3	1003																																													NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40733220	40733220	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	126	304	0	ENST00000373198.4:c.3586G>C	p.Asp1196His	p.D1196H	ENST00000373198	NM_133170.3	1196	Gat/Cat																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	11992156	11992186	+	frameshift_variant	Frame_Shift_Del	DEL	TGACAGCAACACGTTTGAAATGAATGGCAAA	TGACAGCAACACGTTTGAAATGAATGGCAAA	-			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	204	361	1	ENST00000396373.4:c.246_276del	p.Ile82MetfsTer6	p.I82Mfs*6	ENST00000396373	NM_001987.4	82	atTGACAGCAACACGTTTGAAATGAATGGCAAA/at																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44879910	44879913	+	frameshift_variant	Frame_Shift_Del	DEL	AAGG	AAGG	-			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	206	257	0	ENST00000377967.4:c.501_504del	p.Glu168PhefsTer11	p.E168Ffs*11	ENST00000377967	NM_021140.2	167	AAGGaa/aa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108216512	108216515	+	frameshift_variant	Frame_Shift_Del	DEL	ATGG	ATGG	-			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	336	470	0	ENST00000278616.4:c.8464_8467del	p.Asp2822PhefsTer34	p.D2822Ffs*34	ENST00000278616	NM_000051.3	2821	ATGGat/at																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578205	7578206	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TATGTCGAAAA			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1127	65	459	0	ENST00000269305.4:c.633_643dup	p.Ser215IlefsTer36	p.S215Ifs*36	ENST00000269305	NM_001126112.2	215	agt/aTTTTCGACATAgt																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63530033	63530041	+	inframe_deletion	In_Frame_Del	DEL	TAATTTCCC	TAATTTCCC	-			P-0005308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	220	306	0	ENST00000307078.5:c.2394_2402del	p.Lys798_Tyr801delinsAsn	p.K798_Y801delinsN	ENST00000307078	NM_004655.3	798	aaGGGAAATTAt/aat																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	25	473	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720805	89720808	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0014095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	14	184	2	ENST00000371953.3:c.956_959delCTTT	p.Thr319LysfsTer24	p.T319Kfs*24	ENST00000371953	NM_000314.4	319	aCTTTa/aa																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0014095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	38	492	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0014095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	57	493	0	ENST00000275493.2:c.2317_2319dupCAC	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711874	89711874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0014095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	73	416	0	ENST00000371953.3:c.493-1G>A		p.X165_splice	ENST00000371953	NM_000314.4	165																																													NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55370985	55370985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	43	352	0	ENST00000297316.4:c.287C>G	p.Ala96Gly	p.A96G	ENST00000297316	NM_022454.3	96	gCc/gGc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591078	67591089	+	inframe_deletion	In_Frame_Del	DEL	AGAAATTGACAA	AGAAATTGACAA	-			P-0014095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	40	343	0	ENST00000274335.5:c.1672_1683delGAAATTGACAAA	p.Glu558_Lys561del	p.E558_K561del	ENST00000274335		557	cgAGAAATTGACAAa/cga																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53223604	53223604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	55	474	0	ENST00000375401.3:c.3755G>A	p.Arg1252His	p.R1252H	ENST00000375401	NM_004187.3	1252	cGc/cAc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67588933	67588933	+	frameshift_variant	Frame_Shift_Ins	INS	G	G	AT			P-0014095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	26	318	0	ENST00000274335.5:c.1024delinsAT	p.Glu342IlefsTer4	p.E342Ifs*4	ENST00000274335		342	Gaa/ATaa																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1271	158	467	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720833	89720836	+	frameshift_variant	Frame_Shift_Del	DEL	AAAT	AAAT	-			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	55	199	0	ENST00000371953.3:c.987_990delTAAA	p.Asn329LysfsTer14	p.N329Kfs*14	ENST00000371953	NM_000314.4	328	gcAAAT/gc																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	285	385	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	162	431	0	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag																																												NEWRECORD																																		
NPM1	0	MSKCC	GRCh37	5	170814959	170814959	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	69	232	0	ENST00000296930.5:c.7G>C	p.Asp3His	p.D3H	ENST00000296930	NM_002520.6	3	Gat/Cat																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176707822	176707822	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	123	444	0	ENST00000439151.2:c.5879C>G	p.Thr1960Arg	p.T1960R	ENST00000439151	NM_022455.4	1960	aCa/aGa																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039419	47039419	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	160	531	0	ENST00000329236.7:c.811A>T	p.Ile271Phe	p.I271F	ENST00000329236	NM_001204466.1	271	Atc/Ttc																																												NEWRECORD																																		
STAT5A	0	MSKCC	GRCh37	17	40441468	40441469	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCGCT			P-0011189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	152	546	0	ENST00000345506.4:c.44_48dup	p.Gln17CysfsTer69	p.Q17Cfs*69	ENST00000345506	NM_003152.3	13	-/GCGCT																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	100	497	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47041720	47041720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	137	320	0	ENST00000329236.7:c.1711C>T	p.Gln571Ter	p.Q571*	ENST00000329236	NM_001204466.1	571	Caa/Taa																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190728705	190728705	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	139	481	0	ENST00000441310.2:c.2093A>T	p.Gln698Leu	p.Q698L	ENST00000441310	NM_000534.4	698	cAg/cTg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1223003	1223003	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	97	369	0	ENST00000326873.7:c.941del	p.Pro314LeufsTer22	p.P314Lfs*22	ENST00000326873	NM_000455.4	314	Cct/ct																																												NEWRECORD																																		
NFKBIA	0	MSKCC	GRCh37	14	35872951	35872951	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	200	1077	0	ENST00000216797.5:c.281T>C	p.Ile94Thr	p.I94T	ENST00000216797	NM_020529.2	94	aTc/aCc																																												NEWRECORD																																		
GPS2	0	MSKCC	GRCh37	17	7218349	7218349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	144	710	0	ENST00000380728.2:c.23C>T	p.Pro8Leu	p.P8L	ENST00000380728		8	cCc/cTc																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45372144	45372144	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	124	606	0	ENST00000262160.6:c.1025G>T	p.Gly342Val	p.G342V	ENST00000262160	NM_005901.5	342	gGt/gTt																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40743935	40743935	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	133	479	2	ENST00000373198.4:c.3060G>A	p.Trp1020Ter	p.W1020*	ENST00000373198	NM_133170.3	1020	tgG/tgA																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10599926	10599927	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	185	770	0	ENST00000171111.5:c.1649_1650insA	p.Met550IlefsTer24	p.M550Ifs*24	ENST00000171111	NM_203500.1	550	atg/atAg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112164	115112164	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	108	584	0	ENST00000257566.3:c.1576del	p.Ala526ProfsTer106	p.A526Pfs*106	ENST00000257566	NM_016569.3	526	Gcc/cc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	119	313	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	119	313	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	119	313	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108205838	108205838	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0010984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	103	298	0	ENST00000278616.4:c.8151+2T>A		p.X2717_splice	ENST00000278616	NM_000051.3	2717																																													NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913078	32913078	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1671	365	1014	3	ENST00000380152.3:c.4586G>A	p.Gly1529Glu	p.G1529E	ENST00000380152		1529	gGg/gAg																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39930898	39930899	+	stop_gained,inframe_insertion	Nonsense_Mutation	INS	-	-	AGCAGCGGGTAGACATAAAATACTGTCCTCTTGTAATCCTTCCATCTATGT			P-0010984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	148	439	0	ENST00000378444.4:c.2998-6_3042dup	p.Ala1014_Tyr1015insThrTerMetGluGlyLeuGlnGluAspSerIleLeuCysLeuProAlaAla	p.A1014_Y1015insT*MEGLQEDSILCLPAA	ENST00000378444	NM_001123385.1	1014	-/ACATAGATGGAAGGATTACAAGAGGACAGTATTTTATGTCTACCCGCTGCT																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916649	178916667	+	protein_altering_variant	In_Frame_Del	DEL	CATCCACTTGATGCCCCCA	CATCCACTTGATGCCCCCA	GCAT			P-0010984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1394	245	870	0	ENST00000263967.3:c.36_54delinsGCAT	p.Ile13_Pro18delinsHis	p.I13_P18delinsH	ENST00000263967	NM_006218.2	12	ggCATCCACTTGATGCCCCCA/ggGCAT																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	17	459	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	21	611	1	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49445944	49445944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	37	745	0	ENST00000301067.7:c.1522G>A	p.Glu508Lys	p.E508K	ENST00000301067	NM_003482.3	508	Gaa/Aaa																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36259087	36259150	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCGGCCTCGCCGGCCTCCGCCTGTCCTCCCACCACCCTCTCCGGGCCAGTACCTTGAAAGCGA	CCCGGCCTCGCCGGCCTCCGCCTGTCCTCCCACCACCCTCTCCGGGCCAGTACCTTGAAAGCGA	-			P-0013021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	15	377	0	ENST00000300305.3:c.341_351+53del		p.X114_splice	ENST00000300305		114																																													NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971031	21971037	+	protein_altering_variant	In_Frame_Del	DEL	GGCATCG	GGCATCG	C			P-0013021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	28	384	0	ENST00000304494.5:c.321_327delinsG	p.Asp108_Ala109del	p.D108_A109del	ENST00000304494	NM_000077.4	107	cgCGATGCC/cgG																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971031	21971037	+	protein_altering_variant	In_Frame_Del	DEL	GGCATCG	GGCATCG	C			P-0013021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	28	384	0	ENST00000304494.5:c.321_327delinsG	p.Asp108_Ala109del	p.D108_A109del	ENST00000304494	NM_000077.4	107	cgCGATGCC/cgG																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971031	21971037	+	protein_altering_variant	In_Frame_Del	DEL	GGCATCG	GGCATCG	C			P-0013021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	28	384	0	ENST00000304494.5:c.321_327delinsG	p.Asp108_Ala109del	p.D108_A109del	ENST00000304494	NM_000077.4	107	cgCGATGCC/cgG																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000804-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			250	33	206	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47084150	47084150	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002719-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	136	363	0	ENST00000409792.3:c.7139C>G	p.Pro2380Arg	p.P2380R	ENST00000409792	NM_014159.6	2380	cCc/cGc																																												NEWRECORD																																		
SHQ1	0	MSKCC	GRCh37	3	72893570	72893570	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002719-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	179	453	0	ENST00000325599.8:c.148A>G	p.Thr50Ala	p.T50A	ENST00000325599	NM_018130.2	50	Acc/Gcc																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89528603	89528603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002719-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	124	406	0	ENST00000336596.2:c.2903G>T	p.Ser968Ile	p.S968I	ENST00000336596	NM_005233.5	968	aGc/aTc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246258	46246258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002719-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	178	434	0	ENST00000334344.6:c.4352C>T	p.Pro1451Leu	p.P1451L	ENST00000334344	NM_152641.2	1451	cCt/cTt																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150016273	150016279	+	stop_gained,protein_altering_variant	Nonsense_Mutation	INS	CTTGGTA	CTTGGTA	GAATTCAATT			P-0002719-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	171	603	0	ENST00000253339.5:c.427_433delinsAATTGAATTC	p.Tyr143_Asp145delinsAsnTerIleHis	p.Y143_D145delinsN*IH	ENST00000253339		143	TACCAAGat/AATTGAATTCat																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	246	461	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42795608	42795609	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1009	343	816	0	ENST00000575354.2:c.2694dupC	p.Lys899GlnfsTer32	p.K899Qfs*32	ENST00000575354	NM_015125.3	896	-/C																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2127724	2127724	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145332426		P-0014363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	197	319	1	ENST00000219476.3:c.2963G>A	p.Arg988His	p.R988H	ENST00000219476	NM_000548.3	988	cGc/cAc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10274052	10274052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	324	679	2	ENST00000330684.3:c.217C>A	p.Leu73Met	p.L73M	ENST00000330684	NM_001134407.1	73	Ctg/Atg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52724303	52724303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014363-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			737	227	492	0	ENST00000322088.6:c.1435C>T	p.His479Tyr	p.H479Y	ENST00000322088	NM_014225.5	479	Cat/Tat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0000777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	349	226	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173345	112173345	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	95	380	0	ENST00000257430.4:c.2054G>A	p.Trp685Ter	p.W685*	ENST00000257430	NM_000038.5	685	tGg/tAg																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95572022	95572022	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	86	396	0	ENST00000343455.3:c.3086A>G	p.Asn1029Ser	p.N1029S	ENST00000343455	NM_177438.2	1029	aAt/aGt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175207	112175208	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000777-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			87	35	121	0	ENST00000257430.4:c.3919dupA	p.Ile1307AsnfsTer8	p.I1307Nfs*8	ENST00000257430	NM_000038.5	1306	gaa/gAaa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	113	416	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0011482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	39	377	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108115594	108115594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	48	539	1	ENST00000278616.4:c.742C>T	p.Arg248Ter	p.R248*	ENST00000278616	NM_000051.3	248	Cga/Tga																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30686299	30686299	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	49	482	0	ENST00000359013.4:c.230A>C	p.Lys77Thr	p.K77T	ENST00000359013	NM_001024847.2	77	aAa/aCa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178952054	178952054	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	33	437	0	ENST00000263967.3:c.3109G>C	p.Glu1037Gln	p.E1037Q	ENST00000263967	NM_006218.2	1037	Gag/Cag																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86633855	86633855	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	50	573	0	ENST00000274376.6:c.964A>C	p.Asn322His	p.N322H	ENST00000274376	NM_002890.2	322	Aat/Cat																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	37020667	37020667	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	18	384	0	ENST00000358127.4:c.178G>C	p.Val60Leu	p.V60L	ENST00000358127	NM_001280556.1	60	Gtc/Ctc																																												NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98242287	98242287	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs758585782		P-0011482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	33	454	0	ENST00000331920.6:c.1031G>A	p.Gly344Asp	p.G344D	ENST00000331920	NM_000264.3	344	gGt/gAt																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332543	70332543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	16	452	0	ENST00000373644.4:c.448G>A	p.Val150Ile	p.V150I	ENST00000373644	NM_030625.2	150	Gta/Ata																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67645279	67645279	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	45	498	1	ENST00000264010.4:c.544G>T	p.Glu182Ter	p.E182*	ENST00000264010	NM_006565.3	182	Gaa/Taa																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37864662	37864662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	98	673	0	ENST00000269571.5:c.314C>T	p.Thr105Ile	p.T105I	ENST00000269571		105	aCc/aTc																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114911526	114911527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0011482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	58	674	0	ENST00000543371.1:c.1047_1048dup	p.Ile350ThrfsTer2	p.I350Tfs*2	ENST00000543371	NM_001198531.1	348	-/CA																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1183	108	539	0	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																												NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1491	256	819	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	213	747	2	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs68130327		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	95	273	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	206	336	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	18	123	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	125	410	1	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27097622	27097622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	108	502	1	ENST00000324856.7:c.3216del	p.Lys1072AsnfsTer21	p.K1072Nfs*21	ENST00000324856	NM_006015.4	1071	Aaa/aa																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	56	411	1	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32953632	32953633	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1216	128	694	0	ENST00000380152.3:c.8940dupA	p.Glu2981ArgfsTer37	p.E2981Rfs*37	ENST00000380152		2978	tca/tcAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	73	564	3	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg																																												NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	96	467	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																												NEWRECORD																																		
ERG	2078	MSKCC	GRCh37	21	39755554	39755554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	88	383	1	ENST00000288319.7:c.1211del	p.Pro404ArgfsTer25	p.P404Rfs*25	ENST00000288319	NM_182918.3	404	cCg/cg																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	396908	396908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	163	458	1	ENST00000262320.3:c.118G>A	p.Ala40Thr	p.A40T	ENST00000262320	NM_003502.3	40	Gcc/Acc																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1307	229	605	2	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007824	45007825	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	44	351	0	ENST00000558401.1:c.276dup	p.Thr93HisfsTer2	p.T93Hfs*2	ENST00000558401	NM_004048.2	91	acc/aCcc																																												NEWRECORD																																		
HRAS	0	MSKCC	GRCh37	11	533838	533838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	153	450	2	ENST00000311189.7:c.218G>A	p.Arg73His	p.R73H	ENST00000311189		73	cGc/cAc																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	120	504	0	ENST00000250448.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000250448	NM_004496.3	219	Cgc/Tgc																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	393357	393357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	63	305	2	ENST00000380956.4:c.205G>A	p.Ala69Thr	p.A69T	ENST00000380956	NM_001195286.1	69	Gcg/Acg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156830754	156830754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	14	59	0	ENST00000524377.1:c.28C>T	p.Leu10Phe	p.L10F	ENST00000524377	NM_002529.3	10	Ctt/Ttt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212543850	212543850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	83	331	0	ENST00000342788.4:c.1549C>T	p.Pro517Ser	p.P517S	ENST00000342788	NM_005235.2	517	Cca/Tca																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225370789	225370789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	155	528	0	ENST00000264414.4:c.1090C>T	p.Arg364Cys	p.R364C	ENST00000264414	NM_003590.4	364	Cgt/Tgt																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138461565	138461565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	162	470	0	ENST00000289153.2:c.456G>A	p.Met152Ile	p.M152I	ENST00000289153	NM_006219.2	152	atG/atA																																												NEWRECORD																																		
FOXL2	0	MSKCC	GRCh37	3	138664838	138664838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	18	37	0	ENST00000330315.3:c.727G>A	p.Ala243Thr	p.A243T	ENST00000330315	NM_023067.3	243	Gct/Act																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66509110	66509110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	123	469	0	ENST00000273854.3:c.217C>A	p.Leu73Met	p.L73M	ENST00000273854	NM_004439.5	73	Ctg/Atg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539978	187539978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	124	365	0	ENST00000441802.2:c.7762G>A	p.Asp2588Asn	p.D2588N	ENST00000441802	NM_005245.3	2588	Gat/Aat																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112102945	112102945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	177	436	1	ENST00000257430.4:c.280C>T	p.Arg94Cys	p.R94C	ENST00000257430	NM_000038.5	94	Cgt/Tgt																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2985462	2985462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	88	457	0	ENST00000396946.4:c.349A>G	p.Thr117Ala	p.T117A	ENST00000396946	NM_032415.4	117	Acc/Gcc																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140534429	140534429	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	43	420	0	ENST00000288602.6:c.484C>T	p.Pro162Ser	p.P162S	ENST00000288602	NM_004333.4	162	Ccc/Tcc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145739881	145739881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	149	430	1	ENST00000428558.2:c.1649C>T	p.Ala550Val	p.A550V	ENST00000428558	NM_004260.3	550	gCg/gTg																																												NEWRECORD																																		
CDKN2B	1030	MSKCC	GRCh37	9	22006005	22006005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	106	449	0	ENST00000276925.6:c.398G>A	p.Arg133His	p.R133H	ENST00000276925	NM_004936.3	133	cGc/cAc																																												NEWRECORD																																		
FGF19	0	MSKCC	GRCh37	11	69518485	69518485	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	31	228	1	ENST00000294312.3:c.160G>T	p.Gly54Trp	p.G54W	ENST00000294312	NM_005117.2	54	Ggg/Tgg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108114823	108114823	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	56	422	0	ENST00000278616.4:c.640T>C	p.Ser214Pro	p.S214P	ENST00000278616	NM_000051.3	214	Tcc/Ccc																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	475143	475143	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	141	551	0	ENST00000399788.2:c.494T>C	p.Ile165Thr	p.I165T	ENST00000399788	NM_001042603.1	165	aTt/aCt																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18524116	18524116	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	51	426	0	ENST00000266497.5:c.1628T>C	p.Ile543Thr	p.I543T	ENST00000266497		543	aTc/aCc																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50480076	50480076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	122	409	0	ENST00000394963.4:c.310G>A	p.Ala104Thr	p.A104T	ENST00000394963	NM_003076.4	104	Gcc/Acc																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91304245	91304245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	253	580	0	ENST00000355112.3:c.1642C>A	p.Gln548Lys	p.Q548K	ENST00000355112	NM_000057.2	548	Caa/Aaa																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	338210	338210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1302	113	611	0	ENST00000262320.3:c.2501G>T	p.Gly834Val	p.G834V	ENST00000262320	NM_003502.3	834	gGg/gTg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3781269	3781269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	173	447	1	ENST00000262367.5:c.5096G>A	p.Gly1699Asp	p.G1699D	ENST00000262367	NM_004380.2	1699	gGc/gAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578421	7578421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	38	312	0	ENST00000269305.4:c.509C>T	p.Thr170Met	p.T170M	ENST00000269305	NM_001126112.2	170	aCg/aTg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41546105	41546105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	51	219	0	ENST00000263253.7:c.2720C>T	p.Ala907Val	p.A907V	ENST00000263253	NM_001429.3	907	gCt/gTt																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39932039	39932039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	156	224	0	ENST00000378444.4:c.2560G>A	p.Ala854Thr	p.A854T	ENST00000378444	NM_001123385.1	854	Gcc/Acc																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138199945	138199945	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	77	168	1	ENST00000237289.4:c.1368delG	p.Pro457LeufsTer20	p.P457Lfs*20	ENST00000237289	NM_001270507.1	455	Ggg/gg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	75	360	0	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	27	227	0	ENST00000375759.3:c.9950delC	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37619031	37619032	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	86	386	0	ENST00000447079.4:c.711dup	p.Ser238LeufsTer10	p.S238Lfs*10	ENST00000447079	NM_015083.1	236	agc/agCc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3820668	3820668	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	65	367	0	ENST00000262367.5:c.2783del	p.Pro928ArgfsTer70	p.P928Rfs*70	ENST00000262367	NM_004380.2	928	cCg/cg																																												NEWRECORD																																		
NCOR1	9611	MSKCC	GRCh37	17	16029446	16029446	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	268	654	0	ENST00000268712.3:c.1584del	p.Glu529LysfsTer26	p.E529Kfs*26	ENST00000268712	NM_006311.3	528	aaA/aa																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	110	299	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	59	234	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93650109	93650109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	114	412	0	ENST00000375746.1:c.1660G>A	p.Asp554Asn	p.D554N	ENST00000375746	NM_001174167.1	554	Gat/Aat																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	77	278	3	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	127	521	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	26	355	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	33	361	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49424427	49424427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	112	437	1	ENST00000301067.7:c.13796C>T	p.Ala4599Val	p.A4599V	ENST00000301067	NM_003482.3	4599	gCg/gTg																																												NEWRECORD																																		
ZFHX3	463	MSKCC	GRCh37	16	72991758	72991758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	122	264	1	ENST00000268489.5:c.2287del	p.Glu763SerfsTer61	p.E763Sfs*61	ENST00000268489	NM_006885.3	763	Gag/ag																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139417343	139417343	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150737112		P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	76	265	0	ENST00000277541.6:c.701G>A	p.Arg234His	p.R234H	ENST00000277541	NM_017617.3	234	cGc/cAc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1807506	1807506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	79	600	0	ENST00000260795.2:c.1675G>A	p.Ala559Thr	p.A559T	ENST00000260795		559	Gcc/Acc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41961399	41961399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	163	594	0	ENST00000219905.7:c.307C>T	p.Arg103Cys	p.R103C	ENST00000219905	NM_001164273.1	103	Cgc/Tgc																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9780181	9780181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	104	533	0	ENST00000377346.4:c.1351G>A	p.Glu451Lys	p.E451K	ENST00000377346	NM_005026.3	451	Gag/Aag																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11272470	11272470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	96	304	2	ENST00000361445.4:c.3460C>T	p.Arg1154Trp	p.R1154W	ENST00000361445	NM_004958.3	1154	Cgg/Tgg																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206652308	206652308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	137	446	1	ENST00000367120.3:c.1015G>A	p.Val339Met	p.V339M	ENST00000367120	NM_014002.3	339	Gtg/Atg																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808406	1808406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	62	459	0	ENST00000260795.2:c.2164G>A	p.Asp722Asn	p.D722N	ENST00000260795		722	Gac/Aac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187518086	187518086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	138	470	1	ENST00000441802.2:c.12608G>A	p.Arg4203His	p.R4203H	ENST00000441802	NM_005245.3	4203	cGt/cAt																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2954933	2954933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	151	489	1	ENST00000396946.4:c.2777C>T	p.Pro926Leu	p.P926L	ENST00000396946	NM_032415.4	926	cCg/cTg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139402511	139402511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	122	549	1	ENST00000277541.6:c.3406G>A	p.Gly1136Ser	p.G1136S	ENST00000277541	NM_017617.3	1136	Ggc/Agc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420817	49420817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	130	324	0	ENST00000301067.7:c.14932C>T	p.Arg4978Cys	p.R4978C	ENST00000301067	NM_003482.3	4978	Cgc/Tgc																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50909689	50909689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	141	657	0	ENST00000440232.2:c.1409G>A	p.Arg470His	p.R470H	ENST00000440232	NM_002691.3	470	cGc/cAc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142185334	142185334	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	62	247	0	ENST00000350721.4:c.6729del	p.Phe2243LeufsTer8	p.F2243Lfs*8	ENST00000350721	NM_001184.3	2243	ttT/tt																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17955111	17955112	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	110	458	1	ENST00000458235.1:c.115dupC	p.Gln39ProfsTer13	p.Q39Pfs*13	ENST00000458235	NM_000215.3	39	cag/cCag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	86	775	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67569801	67569802	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TT			P-0004629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	135	683	0	ENST00000274335.5:c.463_464insTT	p.Ser155PhefsTer23	p.S155Ffs*23	ENST00000274335		154	-/TT																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175147	112175147	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	96	618	0	ENST00000257430.4:c.3856del	p.Glu1286LysfsTer2	p.E1286Kfs*2	ENST00000257430	NM_000038.5	1286	Gaa/aa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	23	329	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	11	254	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0010432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	37	617	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12022535	12022535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	63	436	0	ENST00000396373.4:c.641C>T	p.Pro214Leu	p.P214L	ENST00000396373	NM_001987.4	214	cCg/cTg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44942757	44942758	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	47	406	0	ENST00000377967.4:c.3338dup	p.Ser1114IlefsTer37	p.S1114Ifs*37	ENST00000377967	NM_021140.2	1113	gta/gTta																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56492686	56492686	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	62	452	1	ENST00000407977.2:c.252+1G>A		p.X84_splice	ENST00000407977		84																																													NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	315	536	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0013286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	215	686	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0013286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	215	686	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576882	7576883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	174	581	0	ENST00000269305.4:c.963dup	p.Pro322ThrfsTer15	p.P322Tfs*15	ENST00000269305	NM_001126112.2	321	-/A																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50468269	50468269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	49	452	0	ENST00000331340.3:c.1504C>T	p.Arg502Trp	p.R502W	ENST00000331340	NM_006060.4	502	Cgg/Tgg																																												NEWRECORD																																		
CD276	0	MSKCC	GRCh37	15	73995319	73995320	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	12	171	0	ENST00000318443.5:c.628dup	p.Val210GlyfsTer44	p.V210Gfs*44	ENST00000318443	NM_001024736.1	209	cgg/cGgg																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	61	117	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	61	117	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	107	324	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578440	7578440	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	119	378	0	ENST00000269305.4:c.490A>T	p.Lys164Ter	p.K164*	ENST00000269305	NM_001126112.2	164	Aag/Tag																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	61	117	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11999013	11999013	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	97	272	0	ENST00000353533.5:c.513+2T>C		p.X171_splice	ENST00000353533	NM_003010.3	171																																													NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153245447	153245447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	279	407	0	ENST00000281708.4:c.1744T>C	p.Ser582Pro	p.S582P	ENST00000281708	NM_033632.3	582	Tcg/Ccg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023217	27023218	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCTA			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	52	189	0	ENST00000324856.7:c.324_328dup	p.Arg110ThrfsTer6	p.R110Tfs*6	ENST00000324856	NM_006015.4	108	ggc/ggCCCTAc																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156834548	156834548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	157	549	1	ENST00000524377.1:c.316G>A	p.Val106Met	p.V106M	ENST00000524377	NM_002529.3	106	Gtg/Atg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108205726	108205726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	87	276	0	ENST00000278616.4:c.8041G>A	p.Val2681Met	p.V2681M	ENST00000278616	NM_000051.3	2681	Gtg/Atg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9862771	9862771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	163	448	0	ENST00000330684.3:c.2532G>T	p.Lys844Asn	p.K844N	ENST00000330684	NM_001134407.1	844	aaG/aaT																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175164	112175165	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	ACGAC			P-0013955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	59	162	0	ENST00000257430.4:c.3876_3880dup	p.Gln1294ArgfsTer13	p.Q1294Rfs*13	ENST00000257430	NM_000038.5	1291	-/ACGAC																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	99	613	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579536	7579537	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	145	801	0	ENST00000269305.4:c.150dup	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	50	-/T																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66231661	66231661	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	38	412	0	ENST00000273854.3:c.2039T>A	p.Val680Asp	p.V680D	ENST00000273854	NM_004439.5	680	gTt/gAt																																												NEWRECORD																																		
HIST1H3A	0	MSKCC	GRCh37	6	26020889	26020889	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	86	352	0	ENST00000357647.3:c.172T>C	p.Ser58Pro	p.S58P	ENST00000357647	NM_003529.2	58	Tcc/Ccc																																												NEWRECORD																																		
SESN1	0	MSKCC	GRCh37	6	109319885	109319885	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	33	624	0	ENST00000436639.2:c.803A>G	p.Tyr268Cys	p.Y268C	ENST00000436639	NM_014454.2	268	tAt/tGt																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729946	41729946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	64	616	1	ENST00000242208.4:c.583G>T	p.Val195Leu	p.V195L	ENST00000242208	NM_002192.2	195	Gtg/Ttg																																												NEWRECORD																																		
LYN	0	MSKCC	GRCh37	8	56922550	56922550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014419-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	35	572	0	ENST00000519728.1:c.1420G>A	p.Asp474Asn	p.D474N	ENST00000519728	NM_002350.3	474	Gac/Aac																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0001321-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	85	196	0	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55948792	55948792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001321-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	39	340	0	ENST00000263923.4:c.3673C>A	p.Gln1225Lys	p.Q1225K	ENST00000263923	NM_002253.2	1225	Cag/Aag																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157528105	157528105	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001321-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	39	174	0	ENST00000346085.5:c.5830C>T	p.Arg1944Ter	p.R1944*	ENST00000346085	NM_020732.3	1944	Cga/Tga																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508226	106508226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001321-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	36	115	0	ENST00000359195.3:c.220G>A	p.Val74Met	p.V74M	ENST00000359195	NM_002649.2	74	Gtg/Atg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0004967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	210	596	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99149945	99149945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	177	572	1	ENST00000074304.5:c.257C>T	p.Thr86Met	p.T86M	ENST00000074304	NM_001134224.1	86	aCg/aTg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67590403	67590403	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	27	520	0	ENST00000274335.5:c.1465G>T	p.Glu489Ter	p.E489*	ENST00000274335		489	Gaa/Taa																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9862749	9862749	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150316865		P-0004967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	650	635	1	ENST00000330684.3:c.2554G>A	p.Val852Met	p.V852M	ENST00000330684	NM_001134407.1	852	Gtg/Atg																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48652320	48652320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	477	392	2	ENST00000376670.3:c.991G>T	p.Ala331Ser	p.A331S	ENST00000376670	NM_002049.3	331	Gct/Tct																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579344	7579345	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	271	585	0	ENST00000269305.4:c.342dup	p.His115AlafsTer34	p.H115Afs*34	ENST00000269305	NM_001126112.2	114	-/G																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0007852-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			700	354	431	5	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593660	55593661	+	protein_altering_variant	In_Frame_Ins	INS	CT	CT	ATGATCACAAATGGGAGTGA			P-0007852-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			2769	519	484	8	ENST00000288135.5:c.1726_1727delinsATGATCACAAATGGGAGTGA	p.Leu576delinsMetIleThrAsnGlySerAsp	p.L576delinsMITNGSD	ENST00000288135	NM_000222.2	576	CTt/ATGATCACAAATGGGAGTGAt																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0012568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	362	504	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153247168	153247168	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	297	495	0	ENST00000281708.4:c.1634A>G	p.Tyr545Cys	p.Y545C	ENST00000281708	NM_033632.3	545	tAt/tGt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692929	89692929	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	182	377	0	ENST00000371953.3:c.413A>G	p.Tyr138Cys	p.Y138C	ENST00000371953	NM_000314.4	138	tAt/tGt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720673	89720676	+	frameshift_variant	Frame_Shift_Del	DEL	TAAA	TAAA	-			P-0012568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	21	62	0	ENST00000371953.3:c.826_829del	p.Asn276HisfsTer14	p.N276Hfs*14	ENST00000371953	NM_000314.4	275	gTAAAt/gt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72923702	72923703	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0012568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	481	794	0	ENST00000268489.5:c.3375dup	p.Lys1126GlufsTer29	p.K1126Efs*29	ENST00000268489	NM_006885.3	1125	-/G																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27087401	27087401	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	446	616	1	ENST00000324856.7:c.1976del	p.Pro659LeufsTer3	p.P659Lfs*3	ENST00000324856	NM_006015.4	659	Cct/ct																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589601	67589604	+	protein_altering_variant	In_Frame_Del	DEL	AGTT	AGTT	G			P-0012568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	142	269	0	ENST00000274335.5:c.1364_1367delinsG	p.Gln455_Phe456delinsArg	p.Q455_F456delinsR	ENST00000274335		455	cAGTTt/cGt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249017	55249018	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCA			P-0001665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			719	330	442	1	ENST00000275493.2:c.2317_2319dupCAC	p.His773dup	p.H773dup	ENST00000275493	NM_005228.3	773	ccc/ccCCAc																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25505463	25505463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	147	230	0	ENST00000264709.3:c.295C>T	p.Pro99Ser	p.P99S	ENST00000264709	NM_175629.2	99	Ccc/Tcc																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180046668	180046668	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	130	224	0	ENST00000261937.6:c.2644A>C	p.Lys882Gln	p.K882Q	ENST00000261937	NM_182925.4	882	Aaa/Caa																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88683192	88683192	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199907158		P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	46	76	0	ENST00000372037.3:c.1402G>A	p.Glu468Lys	p.E468K	ENST00000372037	NM_004329.2	468	Gaa/Aaa																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88423595	88423595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	132	231	0	ENST00000360948.2:c.2240T>C	p.Phe747Ser	p.F747S	ENST00000360948	NM_001012338.2	747	tTc/tCc																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37676208	37676208	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	112	253	0	ENST00000447079.4:c.2964-1G>C		p.X988_splice	ENST00000447079	NM_015083.1	988																																													NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061225	38061242	+	inframe_deletion	In_Frame_Del	DEL	TCGAACATGTTGCCGGAG	TCGAACATGTTGCCGGAG	-			P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	234	171	0	ENST00000250448.2:c.747_764delCTCCGGCAACATGTTCGA	p.Asp249_Phe254del	p.D249_F254del	ENST00000250448	NM_004496.3	249	gaCTCCGGCAACATGTTCGAg/gag																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37618727	37618728	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	299	268	0	ENST00000447079.4:c.405dupA	p.Val136SerfsTer21	p.V136Sfs*21	ENST00000447079	NM_015083.1	135	gaa/gAaa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	205	437	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	94	425	0	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16024505	16024505	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	212	597	0	ENST00000268712.3:c.1713delG	p.Arg572GlufsTer18	p.R572Efs*18	ENST00000268712	NM_006311.3	571	ggG/gg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49436102	49436102	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	17	115	0	ENST00000301067.7:c.5879del	p.Gly1960AlafsTer87	p.G1960Afs*87	ENST00000301067	NM_003482.3	1960	gGc/gc																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	149	545	1	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	138	438	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55370841	55370841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	61	321	2	ENST00000297316.4:c.143C>T	p.Ala48Val	p.A48V	ENST00000297316	NM_022454.3	48	gCg/gTg																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1322	309	898	5	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29910372	29910372	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	97	631	3	ENST00000376809.5:c.46delG	p.Ala16ProfsTer4	p.A16Pfs*4	ENST00000376809	NM_002116.7	14	tcG/tc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151843775	151843775	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	232	418	0	ENST00000262189.6:c.13940delA	p.Lys4647SerfsTer12	p.K4647Sfs*12	ENST00000262189	NM_170606.2	4647	aAg/ag																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16260214	16260214	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	55	273	0	ENST00000375759.3:c.7484delC	p.Pro2495LeufsTer4	p.P2495Lfs*4	ENST00000375759	NM_015001.2	2493	agC/ag																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209116263	209116263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	108	488	0	ENST00000345146.2:c.13delA	p.Ile5SerfsTer7	p.I5Sfs*7	ENST00000345146	NM_005896.2	5	Atc/tc																																												NEWRECORD																																		
FUBP1	8880	MSKCC	GRCh37	1	78444659	78444659	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs908264837		P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	108	370	1	ENST00000370768.2:c.30del	p.Ser11LeufsTer43	p.S11Lfs*43	ENST00000370768	NM_003902.3	10	ccC/cc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56440741	56440741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	149	562	0	ENST00000407977.2:c.477G>A	p.Trp159Ter	p.W159*	ENST00000407977		159	tgG/tgA																																												NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133759623	133759623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	140	626	0	ENST00000318560.5:c.1950del	p.Leu651TrpfsTer43	p.L651Wfs*43	ENST00000318560	NM_005157.4	649	aCc/ac																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	58	265	1	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	58	265	1	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971133	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	58	265	1	ENST00000304494.5:c.225delC	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccC/cc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157528971	157528972	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	91	311	0	ENST00000346085.5:c.6700_6701delCT	p.Leu2234GlyfsTer7	p.L2234Gfs*7	ENST00000346085	NM_020732.3	2232	aaCTct/aact																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32163554	32163554	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	75	419	2	ENST00000375023.3:c.5672del	p.Gly1891AlafsTer13	p.G1891Afs*13	ENST00000375023	NM_004557.3	1891	gGc/gc																																												NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66467573	66467573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	109	436	0	ENST00000273854.3:c.696del	p.Lys232AsnfsTer36	p.K232Nfs*36	ENST00000273854	NM_004439.5	232	aaA/aa																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56448297	56448298	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	129	480	0	ENST00000407977.2:c.349dup	p.Arg117ProfsTer8	p.R117Pfs*8	ENST00000407977		117	cgc/cCgc																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46726423	46726423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	79	319	0	ENST00000371975.4:c.502G>A	p.Val168Ile	p.V168I	ENST00000371975	NM_003579.3	168	Gtc/Atc																																												NEWRECORD																																		
EPCAM	0	MSKCC	GRCh37	2	47602438	47602438	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	147	509	0	ENST00000263735.4:c.491C>T	p.Thr164Ile	p.T164I	ENST00000263735	NM_002354.2	164	aCt/aTt																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713598	30713598	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	99	310	0	ENST00000359013.4:c.998T>C	p.Leu333Pro	p.L333P	ENST00000359013	NM_001024847.2	333	cTg/cCg																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49400021	49400021	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	125	629	0	ENST00000418115.1:c.316T>G	p.Phe106Val	p.F106V	ENST00000418115	NM_001664.2	106	Ttc/Gtc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436342	52436342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	103	546	2	ENST00000460680.1:c.2152C>T	p.Arg718Trp	p.R718W	ENST00000460680	NM_004656.3	718	Cgg/Tgg																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149460328	149460328	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	65	317	0	ENST00000286301.3:c.307+2T>C		p.X103_splice	ENST00000286301	NM_005211.3	103																																													NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128752812	128752812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	99	323	0	ENST00000377970.2:c.973G>A	p.Ala325Thr	p.A325T	ENST00000377970	NM_002467.4	325	Gca/Aca																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46230406	46230406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	171	377	0	ENST00000334344.6:c.740G>A	p.Arg247His	p.R247H	ENST00000334344	NM_152641.2	247	cGt/cAt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49438060	49438060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	352	533	1	ENST00000301067.7:c.5111G>A	p.Arg1704Gln	p.R1704Q	ENST00000301067	NM_003482.3	1704	cGg/cAg																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57859025	57859025	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	308	822	1	ENST00000228682.2:c.521T>C	p.Phe174Ser	p.F174S	ENST00000228682	NM_005269.2	174	tTc/tCc																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21562783	21562783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	55	201	0	ENST00000382592.4:c.1136A>G	p.Asp379Gly	p.D379G	ENST00000382592	NM_014572.2	379	gAc/gGc																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95560460	95560460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	56	201	0	ENST00000343455.3:c.5129C>T	p.Ala1710Val	p.A1710V	ENST00000343455	NM_177438.2	1710	gCg/gTg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41961418	41961418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1372	266	959	2	ENST00000219905.7:c.326G>A	p.Arg109His	p.R109H	ENST00000219905	NM_001164273.1	109	cGt/cAt																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3819176	3819176	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	112	632	0	ENST00000262367.5:c.3059A>G	p.Glu1020Gly	p.E1020G	ENST00000262367	NM_004380.2	1020	gAg/gGg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3832693	3832693	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs61754521		P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	131	521	0	ENST00000262367.5:c.1565A>G	p.Asn522Ser	p.N522S	ENST00000262367	NM_004380.2	522	aAc/aGc																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	747947	747947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	146	553	1	ENST00000314574.4:c.443C>T	p.Ala148Val	p.A148V	ENST00000314574	NM_005433.3	148	gCg/gTg																																												NEWRECORD																																		
BCL2	0	MSKCC	GRCh37	18	60985571	60985571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	54	274	0	ENST00000333681.4:c.329G>A	p.Arg110His	p.R110H	ENST00000333681		110	cGc/cAc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5214637	5214637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	338	657	7	ENST00000357368.4:c.4429C>T	p.Arg1477Cys	p.R1477C	ENST00000357368	NM_002850.3	1477	Cgt/Tgt																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31020695	31020695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	89	371	0	ENST00000375687.4:c.992A>G	p.His331Arg	p.H331R	ENST00000375687	NM_015338.5	331	cAt/cGt																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39704810	39704810	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	96	224	0	ENST00000361337.2:c.156-1G>A		p.X52_splice	ENST00000361337	NM_003286.2	52																																													NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39914723	39914723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	231	399	4	ENST00000378444.4:c.4639C>T	p.Arg1547Ter	p.R1547*	ENST00000378444	NM_001123385.1	1547	Cga/Tga																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37061814	37061878	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCAGAATGTGGATGTTAATGTGCACCCCACAAAGCATGAAGTTCACTTCCTGCACGAGGAGAG	CCCCAGAATGTGGATGTTAATGTGCACCCCACAAAGCATGAAGTTCACTTCCTGCACGAGGAGAG	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	214	464	1	ENST00000231790.2:c.899_963del	p.Pro300HisfsTer40	p.P300Hfs*40	ENST00000231790	NM_000249.3	300	CCCCAGAATGTGGATGTTAATGTGCACCCCACAAAGCATGAAGTTCACTTCCTGCACGAGGAGAGc/c																																												NEWRECORD																																		
MALT1	10892	MSKCC	GRCh37	18	56348561	56348561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	231	816	1	ENST00000348428.3:c.374del	p.Pro125GlnfsTer3	p.P125Qfs*3	ENST00000348428	NM_006785.3	123	agC/ag																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215593635	215593635	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	126	429	0	ENST00000260947.4:c.2099del	p.Gly700AlafsTer14	p.G700Afs*14	ENST00000260947	NM_000465.2	700	gGc/gc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157505370	157505371	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	132	431	0	ENST00000346085.5:c.3356dup	p.Asn1119LysfsTer6	p.N1119Kfs*6	ENST00000346085	NM_020732.3	1117	-/A																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59760684	59760685	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	166	546	1	ENST00000259008.2:c.3722dup	p.Asn1241LysfsTer2	p.N1241Kfs*2	ENST00000259008	NM_032043.2	1241	aat/aaAt																																												NEWRECORD																																		
EGFL7	51162	MSKCC	GRCh37	9	139564755	139564755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	85	470	1	ENST00000308874.7:c.549del	p.Arg184GlyfsTer13	p.R184Gfs*13	ENST00000308874		182	Ccc/cc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42797806	42797807	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	131	437	0	ENST00000575354.2:c.3862dup	p.Glu1288GlyfsTer56	p.E1288Gfs*56	ENST00000575354	NM_015125.3	1286	-/G																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49940112	49940112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	204	722	4	ENST00000296474.3:c.931del	p.Ala311ProfsTer27	p.A311Pfs*27	ENST00000296474	NM_002447.2	311	Gcc/cc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49443512	49443512	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	92	423	0	ENST00000301067.7:c.3859del	p.Glu1287ArgfsTer43	p.E1287Rfs*43	ENST00000301067	NM_003482.3	1287	Gag/ag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49435274	49435275	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	96	386	0	ENST00000301067.7:c.6278_6279del	p.Ile2093SerfsTer3	p.I2093Sfs*3	ENST00000301067	NM_003482.3	2093	aTA/a																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533939	63533942	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	46	203	0	ENST00000307078.5:c.1212_1215del	p.Glu405AlafsTer52	p.E405Afs*52	ENST00000307078	NM_004655.3	404	agAGAG/ag																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46521525	46521525	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	219	702	3	ENST00000262741.5:c.883delA	p.Met295Ter	p.M295*	ENST00000262741	NM_003629.3	295	Atg/tg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	261	301	2	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307																																													NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11130334	11130334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	77	440	1	ENST00000344626.4:c.2573C>T	p.Thr858Met	p.T858M	ENST00000344626	NM_003072.3	858	aCg/aTg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67592157	67592158	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTGCT			P-0009728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	159	231	0	ENST00000274335.5:c.1977_1981dup	p.Val661AlafsTer3	p.V661Afs*3	ENST00000274335		658	gcc/gcCTGCTc																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	32	230	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			695	73	454	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0002884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			705	91	418	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140477807	140477807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	65	407	1	ENST00000288602.6:c.1501G>A	p.Glu501Lys	p.E501K	ENST00000288602	NM_004333.4	501	Gaa/Aaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579468	7579469	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	68	257	0	ENST00000269305.4:c.218dup	p.Ala74GlyfsTer75	p.A74Gfs*75	ENST00000269305	NM_001126112.2	73	gtg/gtTg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0013513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	1018	302	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	293	524	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578402	7578402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	212	439	0	ENST00000269305.4:c.528C>A	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgC/tgA																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637121	176637122	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	128	471	0	ENST00000439151.2:c.1727dup	p.Asn576LysfsTer8	p.N576Kfs*8	ENST00000439151	NM_022455.4	574	gga/ggAa																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55599289	55599289	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	253	541	0	ENST00000288135.5:c.2415C>G	p.Ile805Met	p.I805M	ENST00000288135	NM_000222.2	805	atC/atG																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176675181	176675181	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	109	455	0	ENST00000439151.2:c.4498-1G>A		p.X1500_splice	ENST00000439151	NM_022455.4	1500																																													NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2959242	2959242	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	480	429	1	ENST00000396946.4:c.2274C>A	p.Tyr758Ter	p.Y758*	ENST00000396946	NM_032415.4	758	taC/taA																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18715648	18715648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	201	460	0	ENST00000266497.5:c.3479A>G	p.Glu1160Gly	p.E1160G	ENST00000266497		1160	gAa/gGa																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39755688	39755688	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	299	629	0	ENST00000288319.7:c.1077C>A	p.Asn359Lys	p.N359K	ENST00000288319	NM_182918.3	359	aaC/aaA																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56435312	56435313	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	179	379	0	ENST00000407977.2:c.1824dup	p.Arg609AlafsTer4	p.R609Afs*4	ENST00000407977		608	-/G																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860058	151860058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	106	476	0	ENST00000262189.6:c.10604del	p.Gly3535AspfsTer15	p.G3535Dfs*15	ENST00000262189	NM_170606.2	3535	gGa/ga																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16255266	16255266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	131	298	1	ENST00000375759.3:c.2531G>A	p.Arg844Gln	p.R844Q	ENST00000375759	NM_015001.2	844	cGa/cAa																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	138	379	1	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25466800	25466800	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144689354		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	112	371	0	ENST00000264709.3:c.1903C>T	p.Arg635Trp	p.R635W	ENST00000264709	NM_175629.2	635	Cgg/Tgg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29443576	29443576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	87	322	1	ENST00000389048.3:c.3641G>A	p.Arg1214His	p.R1214H	ENST00000389048	NM_004304.4	1214	cGc/cAc																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99154396	99154396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	120	426	3	ENST00000074304.5:c.538C>T	p.Arg180Trp	p.R180W	ENST00000074304	NM_001134224.1	180	Cgg/Tgg																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128047345	128047345	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144491407		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	91	398	1	ENST00000285398.2:c.577G>A	p.Val193Met	p.V193M	ENST00000285398	NM_000122.1	193	Gtg/Atg																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220440111	220440111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	187	628	1	ENST00000243786.2:c.964C>T	p.Pro322Ser	p.P322S	ENST00000243786	NM_002191.3	322	Cca/Tca																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41275630	41275630	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	76	246	0	ENST00000349496.5:c.1525G>A	p.Ala509Thr	p.A509T	ENST00000349496	NM_001904.3	509	Gct/Act																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38944547	38944547	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	71	271	0	ENST00000357387.3:c.4913+1G>A		p.X1638_splice	ENST00000357387	NM_152756.3	1638																																													NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112111381	112111381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	72	258	1	ENST00000257430.4:c.478G>A	p.Ala160Thr	p.A160T	ENST00000257430	NM_000038.5	160	Gct/Act																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30672873	30672873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1262	230	745	2	ENST00000376406.3:c.4087C>T	p.Pro1363Ser	p.P1363S	ENST00000376406	NM_014641.2	1363	Cct/Tct																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553146	106553146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	86	257	0	ENST00000369096.4:c.1111C>T	p.Arg371Trp	p.R371W	ENST00000369096	NM_001198.3	371	Cgg/Tgg																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150004216	150004216	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	115	323	0	ENST00000253339.5:c.2009G>A	p.Arg670Gln	p.R670Q	ENST00000253339		670	cGg/cAg																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2952993	2952993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	83	350	2	ENST00000396946.4:c.2947G>A	p.Val983Met	p.V983M	ENST00000396946	NM_032415.4	983	Gtg/Atg																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128852114	128852114	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200751953		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	133	496	2	ENST00000249373.3:c.2186C>T	p.Ala729Val	p.A729V	ENST00000249373	NM_005631.4	729	gCg/gTg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8521544	8521544	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	76	211	1	ENST00000356435.5:c.694C>T	p.Arg232Cys	p.R232C	ENST00000356435		232	Cgc/Tgc																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101894898	101894898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	126	337	0	ENST00000374994.4:c.451C>T	p.Arg151Cys	p.R151C	ENST00000374994	NM_004612.2	151	Cgc/Tgc																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133760559	133760559	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	151	489	3	ENST00000318560.5:c.2882C>T	p.Pro961Leu	p.P961L	ENST00000318560	NM_005157.4	961	cCg/cTg																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114910810	114910810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	247	663	3	ENST00000543371.1:c.929C>T	p.Pro310Leu	p.P310L	ENST00000543371	NM_001198531.1	310	cCg/cTg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108216546	108216546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	134	347	0	ENST00000278616.4:c.8495G>A	p.Arg2832His	p.R2832H	ENST00000278616	NM_000051.3	2832	cGt/cAt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118342691	118342691	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	73	275	0	ENST00000534358.1:c.817T>A	p.Leu273Ile	p.L273I	ENST00000534358	NM_005933.3	273	Tta/Ata																																												NEWRECORD																																		
ETV6	0	MSKCC	GRCh37	12	12037474	12037474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	230	233	0	ENST00000396373.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000396373	NM_001987.4	369	Cgg/Tgg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	196	245	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49436599	49436599	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	138	465	2	ENST00000301067.7:c.5707C>T	p.Arg1903Ter	p.R1903*	ENST00000301067	NM_003482.3	1903	Cga/Tga																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111886063	111886063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	408	618	3	ENST00000341259.2:c.1685G>A	p.Arg562Gln	p.R562Q	ENST00000341259	NM_005475.2	562	cGg/cAg																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103519174	103519174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	71	175	0	ENST00000355739.4:c.2512G>A	p.Val838Met	p.V838M	ENST00000355739	NM_000123.3	838	Gtg/Atg																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435204	110435204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	93	325	0	ENST00000375856.3:c.3197C>T	p.Thr1066Ile	p.T1066I	ENST00000375856	NM_003749.2	1066	aCc/aTc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88472565	88472565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	88	406	1	ENST00000360948.2:c.1990G>A	p.Ala664Thr	p.A664T	ENST00000360948	NM_001012338.2	664	Gcc/Acc																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	348223	348223	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	57	259	1	ENST00000262320.3:c.1283C>T	p.Ser428Leu	p.S428L	ENST00000262320	NM_003502.3	428	tCg/tTg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830285	72830285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	112	467	0	ENST00000268489.5:c.6296C>T	p.Pro2099Leu	p.P2099L	ENST00000268489	NM_006885.3	2099	cCg/cTg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81971386	81971386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	130	405	0	ENST00000359376.3:c.3076G>A	p.Ala1026Thr	p.A1026T	ENST00000359376	NM_002661.3	1026	Gca/Aca																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89346700	89346700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	147	446	1	ENST00000301030.4:c.6250G>A	p.Ala2084Thr	p.A2084T	ENST00000301030	NM_001256183.1	2084	Gcc/Acc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89350233	89350233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	228	689	2	ENST00000301030.4:c.2717G>A	p.Arg906Gln	p.R906Q	ENST00000301030	NM_001256183.1	906	cGa/cAa																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89351736	89351736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	231	646	1	ENST00000301030.4:c.1214G>A	p.Arg405His	p.R405H	ENST00000301030	NM_001256183.1	405	cGt/cAt																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89851272	89851272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	136	434	0	ENST00000389301.3:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000389301	NM_000135.2	487	cGg/cAg																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16004609	16004609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	108	357	0	ENST00000268712.3:c.2645C>T	p.Thr882Met	p.T882M	ENST00000268712	NM_006311.3	882	aCg/aTg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29661946	29661946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	113	254	0	ENST00000358273.4:c.5903G>A	p.Arg1968Gln	p.R1968Q	ENST00000358273	NM_001042492.2	1968	cGa/cAa																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	115	378	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37883554	37883554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	128	399	0	ENST00000269571.5:c.3166G>A	p.Gly1056Ser	p.G1056S	ENST00000269571		1056	Ggt/Agt																																												NEWRECORD																																		
STAT5B	0	MSKCC	GRCh37	17	40354428	40354428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	199	696	0	ENST00000293328.3:c.2167G>A	p.Ala723Thr	p.A723T	ENST00000293328	NM_012448.3	723	Gcc/Acc																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41247928	41247928	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	155	356	1	ENST00000357654.3:c.605A>G	p.Gln202Arg	p.Q202R	ENST00000357654	NM_007294.3	202	cAa/cGa																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56440757	56440757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	108	306	1	ENST00000407977.2:c.461C>T	p.Pro154Leu	p.P154L	ENST00000407977		154	cCg/cTg																																												NEWRECORD																																		
CD79B	0	MSKCC	GRCh37	17	62007575	62007575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	161	520	1	ENST00000392795.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000392795	NM_001039933.1	98	Gaa/Aaa																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63530048	63530048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	139	365	1	ENST00000307078.5:c.2387G>A	p.Ser796Asn	p.S796N	ENST00000307078	NM_004655.3	796	aGc/aAc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5265025	5265025	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	113	340	0	ENST00000357368.4:c.562C>T	p.Arg188Ter	p.R188*	ENST00000357368	NM_002850.3	188	Cga/Tga																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15299946	15299946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	71	344	1	ENST00000263388.2:c.1232C>T	p.Thr411Met	p.T411M	ENST00000263388	NM_000435.2	411	aCg/aTg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42791320	42791320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	86	325	1	ENST00000575354.2:c.380C>T	p.Thr127Met	p.T127M	ENST00000575354	NM_015125.3	127	aCg/aTg																																												NEWRECORD																																		
BCL2L1	0	MSKCC	GRCh37	20	30309466	30309466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	180	524	0	ENST00000307677.4:c.556G>A	p.Gly186Ser	p.G186S	ENST00000307677	NM_138578.1	186	Ggc/Agc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40733337	40733337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	42	192	0	ENST00000373198.4:c.3469G>A	p.Asp1157Asn	p.D1157N	ENST00000373198	NM_133170.3	1157	Gat/Aat																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66905930	66905930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	113	221	2	ENST00000374690.3:c.1847G>A	p.Arg616His	p.R616H	ENST00000374690	NM_000044.3	616	cGt/cAt																																												NEWRECORD																																		
IRS1	3667	MSKCC	GRCh37	2	227662352	227662352	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	49	240	0	ENST00000305123.5:c.1103del	p.Pro368ArgfsTer95	p.P368Rfs*95	ENST00000305123	NM_005544.2	368	cCg/cg																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142217557	142217557	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	115	300	0	ENST00000350721.4:c.5440delA	p.Arg1814GlufsTer10	p.R1814Efs*10	ENST00000350721	NM_001184.3	1814	Aga/ga																																												NEWRECORD																																		
NPM1	0	MSKCC	GRCh37	5	170819954	170819959	+	inframe_deletion	In_Frame_Del	DEL	GATGAT	GATGAT	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	97	259	0	ENST00000296930.5:c.501_506del	p.Asp167_Asp168del	p.D167_D168del	ENST00000296930	NM_002520.6	166	GATGAT/-																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	45	154	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70338696	70338698	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	164	313	0	ENST00000374080.3:c.94_96del	p.Lys32del	p.K32del	ENST00000374080		31	cAGAag/cag																																												NEWRECORD																																		
HNF1A	6927	MSKCC	GRCh37	12	121432115	121432115	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs762703502		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	307	345	9	ENST00000257555.6:c.864del	p.Pro291GlnfsTer51	p.P291Qfs*51	ENST00000257555		288	Ggg/gg																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	99	127	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	147	263	5	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152345759	152345760	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	80	283	0	ENST00000359321.1:c.810dup	p.Ile271TyrfsTer8	p.I271Yfs*8	ENST00000359321	NM_005431.1	270	-/T																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47693836	47693837	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	211	328	0	ENST00000233146.2:c.1552_1553del	p.Gln518ValfsTer10	p.Q518Vfs*10	ENST00000233146	NM_000251.2	517	gCA/g																																												NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63532584	63532585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs747355609		P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	78	319	1	ENST00000307078.5:c.1994dup	p.Asn666GlnfsTer41	p.N666Qfs*41	ENST00000307078	NM_004655.3	665	ggc/ggGc																																												NEWRECORD																																		
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	110	398	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0005537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	838	616	1	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	322	579	0	ENST00000269305.4:c.712T>G	p.Cys238Gly	p.C238G	ENST00000269305	NM_001126112.2	238	Tgt/Ggt																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30675451	30675451	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	137	443	0	ENST00000376406.3:c.2905C>G	p.Pro969Ala	p.P969A	ENST00000376406	NM_014641.2	969	Cct/Gct																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32188589	32188589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1201	219	626	3	ENST00000375023.3:c.866G>A	p.Gly289Asp	p.G289D	ENST00000375023	NM_004557.3	289	gGc/gAc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717670	89717671	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	90	565	1	ENST00000371953.3:c.696dup	p.Arg233ThrfsTer10	p.R233Tfs*10	ENST00000371953	NM_000314.4	232	aca/acAa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	154	390	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	160	419	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11144147	11144147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	168	380	0	ENST00000344626.4:c.3728G>C	p.Arg1243Pro	p.R1243P	ENST00000344626	NM_003072.3	1243	cGg/cCg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56176566	56176567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TG			P-0009834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	155	366	0	ENST00000399503.3:c.2118_2119dup	p.Leu707CysfsTer19	p.L707Cfs*19	ENST00000399503	NM_005921.1	706	ctg/cTGtg																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	127	315	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16046918	16046918	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0004183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	216	448	1	ENST00000268712.3:c.1173+2T>C		p.X391_splice	ENST00000268712	NM_006311.3	391																																													NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610249	10610250	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGA			P-0004183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	179	579	0	ENST00000171111.5:c.458_460dupTCC	p.Leu153dup	p.L153dup	ENST00000171111	NM_203500.1	153	cac/cTCCac																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	178	217	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16202977	16202977	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	89	208	1	ENST00000375759.3:c.685C>T	p.Arg229Ter	p.R229*	ENST00000375759	NM_015001.2	229	Cga/Tga																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11217276	11217276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			785	119	341	0	ENST00000361445.4:c.4402G>T	p.Asp1468Tyr	p.D1468Y	ENST00000361445	NM_004958.3	1468	Gac/Tac																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591247	67591247	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	152	182	0	ENST00000274335.5:c.1746-1G>A		p.X582_splice	ENST00000274335		582																																													NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86670048	86670048	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0001044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	320	286	0	ENST00000274376.6:c.1845T>G	p.Tyr615Ter	p.Y615*	ENST00000274376	NM_002890.2	615	taT/taG																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134920353	134920354	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001044-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			762	133	316	0	ENST00000398015.3:c.2169dup	p.Met724TyrfsTer14	p.M724Yfs*14	ENST00000398015	NM_004441.4	723	ggt/ggTt																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24176354	24176354	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	277	409	0	ENST00000263121.7:c.1148del	p.Pro383ArgfsTer100	p.P383Rfs*100	ENST00000263121	NM_003073.3	382	gCc/gc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174798	112174799	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	86	389	0	ENST00000257430.4:c.3510dup	p.Arg1171ThrfsTer8	p.R1171Tfs*8	ENST00000257430	NM_000038.5	1169	-/A																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174232	112174232	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	84	464	0	ENST00000257430.4:c.2943del	p.Ser982ArgfsTer23	p.S982Rfs*23	ENST00000257430	NM_000038.5	981	Ccc/cc																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061224	38061229	+	inframe_deletion	In_Frame_Del	DEL	CTCGAA	CTCGAA	-			P-0004514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	71	326	0	ENST00000250448.2:c.760_765del	p.Phe254_Glu255del	p.F254_E255del	ENST00000250448	NM_004496.3	254	TTCGAG/-																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16259115	16259115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	108	254	0	ENST00000375759.3:c.6380C>T	p.Pro2127Leu	p.P2127L	ENST00000375759	NM_015001.2	2127	cCc/cTc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5239055	5239055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	57	342	0	ENST00000357368.4:c.1724C>A	p.Pro575Gln	p.P575Q	ENST00000357368	NM_002850.3	575	cCg/cAg																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37667840	37667841	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0004514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	149	378	0	ENST00000447079.4:c.2729_2730dup	p.Glu911ArgfsTer8	p.E911Rfs*8	ENST00000447079	NM_015083.1	909	gga/gGAga																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37618571	37618571	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	101	285	0	ENST00000447079.4:c.248del	p.Phe83SerfsTer9	p.F83Sfs*9	ENST00000447079	NM_015083.1	83	Ttc/tc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	124	380	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	35	319	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0004698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	135	586	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152345765	152345766	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	87	733	0	ENST00000359321.1:c.804_805insG	p.Phe269ValfsTer10	p.F269Vfs*10	ENST00000359321	NM_005431.1	268	-/G																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	746	439	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0010166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	434	498	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974695	21974696	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	T			P-0010166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	434	498	0	ENST00000304494.5:c.131dupA	p.Tyr44Ter	p.Y44*	ENST00000304494	NM_000077.4	44	tac/taAc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0010166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	301	510	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28589367	28589367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	306	588	2	ENST00000241453.7:c.2680G>A	p.Val894Ile	p.V894I	ENST00000241453	NM_004119.2	894	Gtt/Att																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575109	48575109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	332	603	0	ENST00000342988.3:c.303G>T	p.Trp101Cys	p.W101C	ENST00000342988	NM_005359.5	101	tgG/tgT																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63554043	63554047	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTT	CTCTT	-			P-0010166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	310	558	0	ENST00000307078.5:c.692_696del	p.Glu231GlyfsTer36	p.E231Gfs*36	ENST00000307078	NM_004655.3	231	gAAGAG/g																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16255475	16255475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	101	269	0	ENST00000375759.3:c.2740G>A	p.Asp914Asn	p.D914N	ENST00000375759	NM_015001.2	914	Gac/Aac																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589536	67589536	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0002006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			461	27	216	0	ENST00000274335.5:c.1300-1G>T		p.X434_splice	ENST00000274335		434																																													NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69625263	69625263	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	60	339	0	ENST00000334134.2:c.530T>C	p.Leu177Pro	p.L177P	ENST00000334134	NM_005247.2	177	cTg/cCg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49050979	49050979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0002006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	67	183	0	ENST00000267163.4:c.2663G>C	p.Ser888Thr	p.S888T	ENST00000267163	NM_000321.2	888	aGt/aCt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577599	7577600	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002006-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	112	209	0	ENST00000269305.4:c.681dup	p.Asp228Ter	p.D228*	ENST00000269305	NM_001126112.2	227	-/T																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			248	25	501	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			178	27	503	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			117	44	258	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118376815	118376815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			186	24	461	0	ENST00000534358.1:c.10208C>T	p.Pro3403Leu	p.P3403L	ENST00000534358	NM_005933.3	3403	cCg/cTg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28913322	28913322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			217	26	609	0	ENST00000282397.4:c.2471G>A	p.Arg824Gln	p.R824Q	ENST00000282397	NM_002019.4	824	cGg/cAg																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119156069	119156070	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			236	25	557	0	ENST00000264033.4:c.1739dup	p.Val581CysfsTer4	p.V581Cfs*4	ENST00000264033	NM_005188.3	578	-/C																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78421016	78421016	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			186	29	378	0	ENST00000370768.2:c.1706-2A>C		p.X569_splice	ENST00000370768	NM_003902.3	569																																													NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139405225	139405225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			167	18	371	0	ENST00000277541.6:c.2620G>A	p.Val874Ile	p.V874I	ENST00000277541	NM_017617.3	874	Gtt/Att																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67477171	67477171	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001693-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			188	17	384	0	ENST00000327367.4:c.978G>A	p.Trp326Ter	p.W326*	ENST00000327367	NM_005902.3	326	tgG/tgA																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	47	240	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8110529	8110529	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	114	330	0	ENST00000585124.1:c.363G>C	p.Gln121His	p.Q121H	ENST00000585124	NM_004217.3	121	caG/caC																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111506	8111507	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001607-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	302	475	1	ENST00000346208.3:c.993dup	p.Ala332CysfsTer20	p.A332Cfs*20	ENST00000346208		331	aat/aaTt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	261	388	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0011374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	174	392	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173590	112173590	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	293	374	0	ENST00000257430.4:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000257430	NM_000038.5	767	Cag/Tag																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128852278	128852278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	96	288	0	ENST00000249373.3:c.2350G>C	p.Asp784His	p.D784H	ENST00000249373	NM_005631.4	784	Gac/Cac																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183752	10183752	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	151	294	0	ENST00000256474.2:c.221T>A	p.Val74Asp	p.V74D	ENST00000256474	NM_000551.3	74	gTc/gAc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157256601	157256601	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0011480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	311	273	0	ENST00000346085.5:c.1928A>G	p.Asp643Gly	p.D643G	ENST00000346085	NM_020732.3	643	gAc/gGc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44942839	44942839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	430	242	0	ENST00000377967.4:c.3419G>A	p.Gly1140Glu	p.G1140E	ENST00000377967	NM_021140.2	1140	gGg/gAg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52595924	52595924	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	227	518	0	ENST00000394830.3:c.3991del	p.Met1331Ter	p.M1331*	ENST00000394830	NM_018313.4	1331	Atg/tg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52623236	52623237	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGCATAA			P-0011480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	53	291	0	ENST00000394830.3:c.2814_2815insTTATGCA	p.Gly939LeufsTer16	p.G939Lfs*16	ENST00000394830	NM_018313.4	938	-/TTATGCA																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	608	305	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372518	55372518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	418	387	0	ENST00000297316.4:c.1208G>T	p.Ser403Ile	p.S403I	ENST00000297316	NM_022454.3	403	aGc/aTc																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55372437	55372438	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0004620-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	505	470	0	ENST00000297316.4:c.1129dup	p.Leu377ProfsTer7	p.L377Pfs*7	ENST00000297316	NM_022454.3	376	ggc/ggCc																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	219	429	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	353	428	1	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g																																												NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795103	242795104	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs768249210		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	126	436	0	ENST00000334409.5:c.105dup	p.Thr36HisfsTer70	p.T36Hfs*70	ENST00000334409	NM_005018.2	35	-/C																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110438317	110438322	+	inframe_deletion	In_Frame_Del	DEL	GTTGTT	GTTGTT	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	60	95	0	ENST00000375856.3:c.79_84del	p.Asn27_Asn28del	p.N27_N28del	ENST00000375856	NM_003749.2	27	AACAAC/-																																												NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	301	912	6	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42794441	42794441	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	241	596	4	ENST00000575354.2:c.1526delC	p.Pro509HisfsTer14	p.P509Hfs*14	ENST00000575354	NM_015125.3	507	cgC/cg																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81554355	81554355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	297	632	0	ENST00000298171.2:c.379del	p.Leu127SerfsTer2	p.L127Sfs*2	ENST00000298171	NM_000369.2	125	ctC/ct																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007619	45007619	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G	rs111482205		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	115	265	0	ENST00000558401.1:c.68-2A>G		p.X23_splice	ENST00000558401	NM_004048.2	23																																													NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32972893	32972893	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	132	350	0	ENST00000380152.3:c.10248del	p.Lys3416AsnfsTer11	p.K3416Nfs*11	ENST00000380152		3415	Aaa/aa																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128038196	128038196	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs150954655		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	249	504	1	ENST00000285398.2:c.1354C>T	p.Arg452Ter	p.R452*	ENST00000285398	NM_000122.1	452	Cga/Tga																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164832	47164832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	197	423	0	ENST00000409792.3:c.1294C>T	p.Arg432Cys	p.R432C	ENST00000409792	NM_014159.6	432	Cgt/Tgt																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458332	120458332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	142	432	0	ENST00000256646.2:c.7013C>T	p.Thr2338Ile	p.T2338I	ENST00000256646	NM_024408.3	2338	aCc/aTc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120468283	120468283	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs74522665		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	124	347	0	ENST00000256646.2:c.4156G>A	p.Gly1386Arg	p.G1386R	ENST00000256646	NM_024408.3	1386	Ggg/Agg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66361249	66361249	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	156	381	1	ENST00000273854.3:c.923G>T	p.Gly308Val	p.G308V	ENST00000273854	NM_004439.5	308	gGg/gTg																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66535351	66535351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	228	531	2	ENST00000273854.3:c.110G>A	p.Arg37Gln	p.R37Q	ENST00000273854	NM_004439.5	37	cGg/cAg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117678044	117678044	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	180	484	0	ENST00000368508.3:c.3889T>G	p.Tyr1297Asp	p.Y1297D	ENST00000368508	NM_002944.2	1297	Tac/Gac																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145736909	145736909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	189	493	0	ENST00000428558.2:c.3532G>A	p.Gly1178Arg	p.G1178R	ENST00000428558	NM_004260.3	1178	Ggg/Agg																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21970987	21970987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	243	373	0	ENST00000304494.5:c.371G>A	p.Arg124His	p.R124H	ENST00000304494	NM_000077.4	124	cGc/cAc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970987	21970987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	243	373	0	ENST00000304494.5:c.371G>A	p.Arg124His	p.R124H	ENST00000304494	NM_000077.4	124	cGc/cAc																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133760255	133760255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	170	439	0	ENST00000318560.5:c.2578G>T	p.Gly860Cys	p.G860C	ENST00000318560	NM_005157.4	860	Ggt/Tgt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426084	49426084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	150	466	1	ENST00000301067.7:c.12404C>T	p.Ala4135Val	p.A4135V	ENST00000301067	NM_003482.3	4135	gCt/gTt																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57864196	57864196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	255	612	3	ENST00000228682.2:c.1673G>A	p.Arg558His	p.R558H	ENST00000228682	NM_005269.2	558	cGc/cAc																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856335	111856335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	105	98	1	ENST00000341259.2:c.386C>T	p.Pro129Leu	p.P129L	ENST00000341259	NM_005475.2	129	cCg/cTg																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21563426	21563426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	280	594	1	ENST00000382592.4:c.493A>G	p.Thr165Ala	p.T165A	ENST00000382592	NM_014572.2	165	Acc/Gcc																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007686	45007686	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	215	470	0	ENST00000558401.1:c.133T>C	p.Cys45Arg	p.C45R	ENST00000558401	NM_004048.2	45	Tgc/Cgc																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99478142	99478142	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	343	629	0	ENST00000268035.6:c.3046G>T	p.Gly1016Ter	p.G1016*	ENST00000268035	NM_000875.3	1016	Gga/Tga																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72829091	72829091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	331	714	0	ENST00000268489.5:c.7490C>T	p.Ser2497Leu	p.S2497L	ENST00000268489	NM_006885.3	2497	tCg/tTg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991721	72991721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	192	302	0	ENST00000268489.5:c.2324C>T	p.Ala775Val	p.A775V	ENST00000268489	NM_006885.3	775	gCg/gTg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81891937	81891937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	368	784	1	ENST00000359376.3:c.407C>T	p.Ala136Val	p.A136V	ENST00000359376	NM_002661.3	136	gCg/gTg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15302921	15302921	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	131	461	0	ENST00000263388.2:c.529A>G	p.Thr177Ala	p.T177A	ENST00000263388	NM_000435.2	177	Aca/Gca																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15349684	15349684	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	73	186	0	ENST00000263377.2:c.3890A>C	p.Gln1297Pro	p.Q1297P	ENST00000263377	NM_058243.2	1297	cAg/cCg																																												NEWRECORD																																		
CEBPA	0	MSKCC	GRCh37	19	33792885	33792885	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	47	129	0	ENST00000498907.2:c.436del	p.Leu146CysfsTer14	p.L146Cfs*14	ENST00000498907	NM_004364.3	146	Ctg/tg																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63532654	63532654	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	124	301	0	ENST00000307078.5:c.1925del	p.Lys642ArgfsTer47	p.K642Rfs*47	ENST00000307078	NM_004655.3	642	aAg/ag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49424113	49424114	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	247	591	3	ENST00000301067.7:c.13948dup	p.Glu4650GlyfsTer12	p.E4650Gfs*12	ENST00000301067	NM_003482.3	4650	gag/gGag																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542110	187542110	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	181	432	0	ENST00000441802.2:c.5630del	p.Pro1877LeufsTer20	p.P1877Lfs*20	ENST00000441802	NM_005245.3	1877	cCt/ct																																												NEWRECORD																																		
AMER1	139285	MSKCC	GRCh37	X	63411530	63411530	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	296	389	0	ENST00000330258.3:c.1637del	p.Leu546CysfsTer16	p.L546Cfs*16	ENST00000330258	NM_152424.3	546	tTg/tg																																												NEWRECORD																																		
PARP1	142	MSKCC	GRCh37	1	226567646	226567647	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs1159330096		P-0005529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	122	376	0	ENST00000366794.5:c.1519dup	p.Ser507LysfsTer14	p.S507Kfs*14	ENST00000366794	NM_001618.3	507	agc/aAgc																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445525	49445526	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs770315135		P-0010264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	44	377	2	ENST00000301067.7:c.1940dup	p.Pro648ThrfsTer2	p.P648Tfs*2	ENST00000301067	NM_003482.3	647	cca/ccCa																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0010264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	97	473	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120497754	120497754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	60	290	1	ENST00000256646.2:c.2128G>A	p.Glu710Lys	p.E710K	ENST00000256646	NM_024408.3	710	Gag/Aag																																												NEWRECORD																																		
FIP1L1	0	MSKCC	GRCh37	4	54280873	54280873	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145771023		P-0010264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	44	316	1	ENST00000337488.6:c.907G>A	p.Glu303Lys	p.E303K	ENST00000337488	NM_030917.3	303	Gaa/Aaa																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120239	70120239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	81	632	0	ENST00000245479.2:c.1241C>A	p.Ser414Ter	p.S414*	ENST00000245479	NM_000346.3	414	tCg/tAg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11144096	11144098	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0010264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	114	714	0	ENST00000344626.4:c.3679_3681delAAG	p.Lys1227del	p.K1227del	ENST00000344626	NM_003072.3	1226	cAGAag/cag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579345	7579346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	290	556	0	ENST00000269305.4:c.341dup	p.Leu114PhefsTer35	p.L114Ffs*35	ENST00000269305	NM_001126112.2	114	ttg/ttTg																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110438020	110438020	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	114	265	0	ENST00000375856.3:c.381G>C	p.Glu127Asp	p.E127D	ENST00000375856	NM_003749.2	127	gaG/gaC																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579419	7579420	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0010816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	732	341	0	ENST00000269305.4:c.267dup	p.Ser90LeufsTer59	p.S90Lfs*59	ENST00000269305	NM_001126112.2	89	-/C																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11308103	11308103	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141936187		P-0010816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	563	456	0	ENST00000361445.4:c.889G>A	p.Asp297Asn	p.D297N	ENST00000361445	NM_004958.3	297	Gac/Aac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187532860	187532860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	452	274	0	ENST00000441802.2:c.9533C>G	p.Ser3178Cys	p.S3178C	ENST00000441802	NM_005245.3	3178	tCt/tGt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170810	112170810	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	620	422	0	ENST00000257430.4:c.1906G>T	p.Gly636Cys	p.G636C	ENST00000257430	NM_000038.5	636	Ggt/Tgt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49448089	49448089	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	172	352	0	ENST00000301067.7:c.510+1G>T		p.X170_splice	ENST00000301067	NM_003482.3	170																																													NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63554393	63554393	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	488	418	0	ENST00000307078.5:c.346G>C	p.Gly116Arg	p.G116R	ENST00000307078	NM_004655.3	116	Gga/Cga																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120510728	120510729	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0010816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	576	415	0	ENST00000256646.2:c.1235_1236delinsTT	p.Cys412Phe	p.C412F	ENST00000256646	NM_024408.3	412	tGC/tTT																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89347891	89347891	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	TT			P-0010816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1879	372	528	0	ENST00000301030.4:c.5059delinsAA	p.Glu1687LysfsTer10	p.E1687Kfs*10	ENST00000301030	NM_001256183.1	1687	Gag/AAag																																												NEWRECORD																																		
MTOR	2475	MSKCC	GRCh37	1	11188078	11188078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	80	354	0	ENST00000361445.4:c.6016G>T	p.Val2006Phe	p.V2006F	ENST00000361445	NM_004958.3	2006	Gtc/Ttc																																												NEWRECORD																																		
TNFRSF14	0	MSKCC	GRCh37	1	2494650	2494650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	57	385	0	ENST00000355716.4:c.790G>A	p.Val264Ile	p.V264I	ENST00000355716	NM_003820.2	264	Gtc/Atc																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39937170	39937170	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	204	491	0	ENST00000378444.4:c.13A>G	p.Thr5Ala	p.T5A	ENST00000378444	NM_001123385.1	5	Acc/Gcc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643325	52643330	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATACCG	ATACCG	-			P-0008399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	110	427	0	ENST00000394830.3:c.2566_2567+4del		p.X856_splice	ENST00000394830	NM_018313.4	856																																													NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183817	10183818	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	114	265	1	ENST00000256474.2:c.287dup	p.Pro97AlafsTer35	p.P97Afs*35	ENST00000256474	NM_000551.3	96	cag/cAag																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32166245	32166245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	376	677	0	ENST00000375023.3:c.4709C>T	p.Pro1570Leu	p.P1570L	ENST00000375023	NM_004557.3	1570	cCc/cTc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436311	52436311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	338	534	0	ENST00000460680.1:c.2183G>A	p.Arg728His	p.R728H	ENST00000460680	NM_004656.3	728	cGc/cAc																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39933828	39933829	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	440	714	0	ENST00000378444.4:c.770dup	p.Ser259IlefsTer42	p.S259Ifs*42	ENST00000378444	NM_001123385.1	257	atc/atTc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	42	152	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	122	425	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	39074472	39074472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	20	387	0	ENST00000357387.3:c.8C>T	p.Ala3Val	p.A3V	ENST00000357387	NM_152756.3	3	gCg/gTg																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63760059	63760059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	33	235	0	ENST00000279873.7:c.712G>A	p.Glu238Lys	p.E238K	ENST00000279873	NM_032199.2	238	Gag/Aag																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41246431	41246431	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	46	423	0	ENST00000357654.3:c.1117A>T	p.Ile373Leu	p.I373L	ENST00000357654	NM_007294.3	373	Ata/Tta																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3819237	3819237	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	535	973	0	ENST00000262367.5:c.2998G>T	p.Glu1000Ter	p.E1000*	ENST00000262367	NM_004380.2	1000	Gag/Tag																																												NEWRECORD																																		
ICOSLG	0	MSKCC	GRCh37	21	45657097	45657097	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	22	348	0	ENST00000407780.3:c.59del	p.Thr20IlefsTer10	p.T20Ifs*10	ENST00000407780	NM_001283052.1	20	aCt/at																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576866	7576867	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	241	822	1	ENST00000269305.4:c.979dup	p.Tyr327LeufsTer10	p.Y327Lfs*10	ENST00000269305	NM_001126112.2	327	tat/tTat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0009328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	633	219	0	ENST00000269305.4:c.375+2T>G		p.X125_splice	ENST00000269305	NM_001126112.2	125																																													NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88423650	88423650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	52	221	1	ENST00000360948.2:c.2185C>T	p.His729Tyr	p.H729Y	ENST00000360948	NM_001012338.2	729	Cac/Tac																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76874369	76874369	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	307	525	1	ENST00000373344.5:c.5353C>T	p.Gln1785Ter	p.Q1785*	ENST00000373344	NM_000489.3	1785	Caa/Taa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29587454	29587455	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GTGACGGCAATGT			P-0009328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	121	309	0	ENST00000358273.4:c.4500_4512dup	p.Leu1505Ter	p.L1505*	ENST00000358273	NM_001042492.2	1500	agt/aGTGACGGCAATGTgt																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	62	140	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56495505	56495505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	223	363	0	ENST00000267101.3:c.3695G>T	p.Ser1232Ile	p.S1232I	ENST00000267101	NM_001982.3	1232	aGt/aTt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27100982	27100983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0005341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	53	298	0	ENST00000324856.7:c.4268dup	p.Gln1424SerfsTer21	p.Q1424Sfs*21	ENST00000324856	NM_006015.4	1422	tcc/tCcc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27092802	27092802	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	182	365	1	ENST00000324856.7:c.2823del	p.Asn942ThrfsTer26	p.N942Tfs*26	ENST00000324856	NM_006015.4	941	atC/at																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143235862	143235863	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TA	TA	-			P-0005341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	101	196	0	ENST00000262992.4:c.423+2_423+3del		p.X141_splice	ENST00000262992	NM_001101669.1	141																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578474	7578475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	143	574	0	ENST00000269305.4:c.455dupC	p.Pro153AlafsTer28	p.P153Afs*28	ENST00000269305	NM_001126112.2	152	ccg/ccCg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2138103	2138103	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	13	807	1	ENST00000219476.3:c.5123T>A	p.Leu1708Gln	p.L1708Q	ENST00000219476	NM_000548.3	1708	cTg/cAg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	90	924	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0012078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	74	1413	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162745530	162745530	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	69	1260	2	ENST00000367921.3:c.1945C>T	p.Pro649Ser	p.P649S	ENST00000367921	NM_006182.2	649	Cct/Tct																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39930320	39930321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	79	1516	0	ENST00000378444.4:c.3143dup	p.Ala1049SerfsTer30	p.A1049Sfs*30	ENST00000378444	NM_001123385.1	1048	cca/ccCa																																												NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0006291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	216	204	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44929545	44929546	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	451	187	0	ENST00000377967.4:c.2646dup	p.Pro883ThrfsTer23	p.P883Tfs*23	ENST00000377967	NM_021140.2	882	ata/atAa																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43615035	43615035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142318626		P-0006291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	163	290	0	ENST00000355710.3:c.2449C>T	p.Arg817Cys	p.R817C	ENST00000355710	NM_020975.4	817	Cgc/Tgc																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0006291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	149	222	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24175838	24175839	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	426	358	0	ENST00000263121.7:c.1067dupT	p.Thr357AspfsTer4	p.T357Dfs*4	ENST00000263121	NM_003073.3	356	ctg/cTtg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7579470	7579471	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs730882018		P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	477	341	0	ENST00000269305.4:c.216dup	p.Val73ArgfsTer76	p.V73Rfs*76	ENST00000269305	NM_001126112.2	72	-/C																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	291	185	3	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	287	312	0	ENST00000269305.4:c.400T>C	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	Ttt/Ctt																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16082397	16082397	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	420	306	0	ENST00000281043.3:c.211A>T	p.Ser71Cys	p.S71C	ENST00000281043	NM_005378.4	71	Agc/Tgc																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128845473	128845473	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	640	442	0	ENST00000249373.3:c.770G>A	p.Arg257Gln	p.R257Q	ENST00000249373	NM_005631.4	257	cGg/cAg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44938414	44938414	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	266	513	0	ENST00000377967.4:c.2962A>C	p.Thr988Pro	p.T988P	ENST00000377967	NM_021140.2	988	Act/Cct																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266038	41266264	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCAT	TGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCAT	-			P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	87	344	0	ENST00000349496.5:c.37_241+22del		p.X13_splice	ENST00000349496	NM_001904.3	13																																													NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150023196	150023196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	266	430	0	ENST00000253339.5:c.67del	p.Tyr23IlefsTer32	p.Y23Ifs*32	ENST00000253339		23	Tat/at																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	41	738	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89813280	89813280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	21	885	2	ENST00000389301.3:c.3367G>A	p.Gly1123Arg	p.G1123R	ENST00000389301	NM_000135.2	1123	Gga/Aga																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32954049	32954049	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	11	739	1	ENST00000380152.3:c.9116C>T	p.Pro3039Leu	p.P3039L	ENST00000380152		3039	cCg/cTg																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56440720	56440721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	17	969	0	ENST00000407977.2:c.497dup	p.Asn167Ter	p.N167*	ENST00000407977		166	ggt/ggGt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48573573	48573573	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	22	643	1	ENST00000342988.3:c.157G>T	p.Glu53Ter	p.E53*	ENST00000342988	NM_005359.5	53	Gaa/Taa																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10599902	10599902	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	10	1076	0	ENST00000171111.5:c.1674del	p.Ile559SerfsTer36	p.I559Sfs*36	ENST00000171111	NM_203500.1	558	ggG/gg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1268701	1268701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	12	806	1	ENST00000310581.5:c.2516C>T	p.Thr839Met	p.T839M	ENST00000310581	NM_198253.2	839	aCg/aTg																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86685275	86685276	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTGCATGAGAT			P-0013571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	15	530	0	ENST00000274376.6:c.2996_3006dup	p.Val1003MetfsTer25	p.V1003Mfs*25	ENST00000274376	NM_002890.2	997	-/TTGCATGAGAT																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	221	455	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577571	7577572	+	inframe_insertion	In_Frame_Ins	INS	-	-	TGTAGT			P-0012409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	179	506	0	ENST00000269305.4:c.704_709dup	p.Asn235_Tyr236dup	p.N235_Y236dup	ENST00000269305	NM_001126112.2	235	atg/aACTACAtg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5231539	5231539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	129	356	0	ENST00000357368.4:c.1937C>T	p.Thr646Met	p.T646M	ENST00000357368	NM_002850.3	646	aCg/aTg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56170948	56170949	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0000490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	91	176	0	ENST00000399503.3:c.1780dupG	p.Ala594GlyfsTer52	p.A594Gfs*52	ENST00000399503	NM_005921.1	592	-/G																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115719	8115720	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000490-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	201	371	0	ENST00000346208.3:c.1066dupA	p.Met356AsnfsTer15	p.M356Nfs*15	ENST00000346208		355	-/A																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	96	334	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64571839	64571840	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	48	770	0	ENST00000337652.1:c.1814dupT	p.Ser606ValfsTer78	p.S606Vfs*78	ENST00000337652	NM_130803.2	605	ctg/ctTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	67	305	0	ENST00000269305.4:c.434T>G	p.Leu145Arg	p.L145R	ENST00000269305	NM_001126112.2	145	cTg/cGg																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153251972	153251972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	90	403	0	ENST00000281708.4:c.1034G>A	p.Gly345Asp	p.G345D	ENST00000281708	NM_033632.3	345	gGt/gAt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	94	468	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	295	599	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	398	572	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153245473	153245473	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	102	442	0	ENST00000281708.4:c.1718G>A	p.Cys573Tyr	p.C573Y	ENST00000281708	NM_033632.3	573	tGc/tAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174588	112174589	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	229	530	0	ENST00000257430.4:c.3297_3298insG	p.Ser1100ValfsTer19	p.S1100Vfs*19	ENST00000257430	NM_000038.5	1099	-/G																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252969	36252977	+	inframe_deletion	In_Frame_Del	DEL	AGTGACCAG	AGTGACCAG	-			P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	223	369	0	ENST00000300305.3:c.385_393del	p.Leu129_Thr131del	p.L129_T131del	ENST00000300305		129	CTGGTCACT/-																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59761459	59761460	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	59	305	0	ENST00000259008.2:c.2947dup	p.Ile983AsnfsTer19	p.I983Nfs*19	ENST00000259008	NM_032043.2	983	att/aAtt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	499	374	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	221	247	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	219	287	0	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176638491	176638491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	269	380	0	ENST00000439151.2:c.3091C>T	p.Arg1031Ter	p.R1031*	ENST00000439151	NM_022455.4	1031	Cga/Tga																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098799	178098799	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1387	377	552	0	ENST00000397062.3:c.246A>T	p.Glu82Asp	p.E82D	ENST00000397062	NM_006164.4	82	gaA/gaT																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645339	67645339	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	261	368	1	ENST00000264010.4:c.610del	p.Thr204GlnfsTer18	p.T204Qfs*18	ENST00000264010	NM_006565.3	202	Aaa/aa																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16262680	16262680	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	182	294	2	ENST00000375759.3:c.9950delC	p.Pro3317ArgfsTer83	p.P3317Rfs*83	ENST00000375759	NM_015001.2	3315	caC/ca																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119910	70119910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	218	432	0	ENST00000245479.2:c.916delG	p.Val306CysfsTer77	p.V306Cfs*77	ENST00000245479	NM_000346.3	304	ccG/cc																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65301147	65301147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	267	410	0	ENST00000342505.4:c.3301G>A	p.Val1101Ile	p.V1101I	ENST00000342505	NM_002227.2	1101	Gtc/Atc																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215593563	215593563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	202	371	1	ENST00000260947.4:c.2171C>T	p.Ala724Val	p.A724V	ENST00000260947	NM_000465.2	724	gCg/gTg																																												NEWRECORD																																		
PHOX2B	0	MSKCC	GRCh37	4	41750536	41750536	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	290	412	1	ENST00000226382.2:c.92C>A	p.Ala31Asp	p.A31D	ENST00000226382	NM_003924.3	31	gCt/gAt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187524964	187524964	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	353	468	0	ENST00000441802.2:c.10716G>C	p.Gln3572His	p.Q3572H	ENST00000441802	NM_005245.3	3572	caG/caC																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86685331	86685331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	139	180	0	ENST00000274376.6:c.3047G>A	p.Arg1016His	p.R1016H	ENST00000274376	NM_002890.2	1016	cGt/cAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173323	112173323	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	306	419	0	ENST00000257430.4:c.2032A>G	p.Ser678Gly	p.S678G	ENST00000257430	NM_000038.5	678	Agt/Ggt																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	397189	397189	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	345	495	0	ENST00000380956.4:c.574T>C	p.Tyr192His	p.Y192H	ENST00000380956	NM_001195286.1	192	Tac/Cac																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32164818	32164818	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	231	301	0	ENST00000375023.3:c.5084A>C	p.Asp1695Ala	p.D1695A	ENST00000375023	NM_004557.3	1695	gAc/gCc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32188935	32188935	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1568	126	655	0	ENST00000375023.3:c.619A>G	p.Lys207Glu	p.K207E	ENST00000375023	NM_004557.3	207	Aaa/Gaa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508419	106508419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	21	156	0	ENST00000359195.3:c.413T>C	p.Val138Ala	p.V138A	ENST00000359195	NM_002649.2	138	gTg/gCg																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93606233	93606233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	348	473	0	ENST00000375746.1:c.53G>A	p.Gly18Asp	p.G18D	ENST00000375746	NM_001174167.1	18	gGc/gAc																																												NEWRECORD																																		
ABL1	0	MSKCC	GRCh37	9	133738304	133738304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	290	381	0	ENST00000318560.5:c.704G>T	p.Trp235Leu	p.W235L	ENST00000318560	NM_005157.4	235	tGg/tTg																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43623560	43623560	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	46	243	0	ENST00000355710.3:c.3188G>A	p.Gly1063Asp	p.G1063D	ENST00000355710	NM_020975.4	1063	gGc/gAc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42042403	42042403	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1569	575	879	4	ENST00000219905.7:c.6598C>T	p.Gln2200Ter	p.Q2200*	ENST00000219905	NM_001164273.1	2200	Cag/Tag																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72822319	72822319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1472	426	881	0	ENST00000268489.5:c.9856G>A	p.Ala3286Thr	p.A3286T	ENST00000268489	NM_006885.3	3286	Gca/Aca																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830204	72830204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	386	679	5	ENST00000268489.5:c.6377C>T	p.Ala2126Val	p.A2126V	ENST00000268489	NM_006885.3	2126	gCg/gTg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89349466	89349466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1299	568	903	2	ENST00000301030.4:c.3484G>A	p.Asp1162Asn	p.D1162N	ENST00000301030	NM_001256183.1	1162	Gac/Aac																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41572949	41572949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	322	509	2	ENST00000263253.7:c.5234C>T	p.Ala1745Val	p.A1745V	ENST00000263253	NM_001429.3	1745	gCt/gTt																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67589626	67589627	+	inframe_insertion	In_Frame_Ins	INS	-	-	GATAGATTATATGAA			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	104	208	0	ENST00000274335.5:c.1392_1406dup	p.Asp464_Glu468dup	p.D464_E468dup	ENST00000274335		464	-/GATAGATTATATGAA																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119768	70119769	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	590	543	0	ENST00000245479.2:c.774dup	p.Pro260AlafsTer36	p.P260Afs*36	ENST00000245479	NM_000346.3	257	cgc/cgCc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023827	27023827	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	302	420	0	ENST00000324856.7:c.936del	p.Gly314AlafsTer49	p.G314Afs*49	ENST00000324856	NM_006015.4	311	taC/ta																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39932084	39932085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	53	484	0	ENST00000378444.4:c.2514dupC	p.Lys839GlnfsTer5	p.K839Qfs*5	ENST00000378444	NM_001123385.1	838	-/C																																												NEWRECORD																																		
NKX3-1	0	MSKCC	GRCh37	8	23538811	23538811	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	215	341	0	ENST00000380871.4:c.628del	p.Leu210TrpfsTer76	p.L210Wfs*76	ENST00000380871	NM_006167.3	210	Ctg/tg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89653850	89653850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	453	240	0	ENST00000371953.3:c.148del	p.Ile50LeufsTer4	p.I50Lfs*4	ENST00000371953	NM_000314.4	50	Att/tt																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11188064	11188064	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	56	250	0	ENST00000361445.4:c.6030G>C	p.Met2010Ile	p.M2010I	ENST00000361445	NM_004958.3	2010	atG/atC																																												NEWRECORD																																		
CCND1	0	MSKCC	GRCh37	11	69456209	69456209	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	57	548	0	ENST00000227507.2:c.128C>G	p.Ser43Cys	p.S43C	ENST00000227507	NM_053056.2	43	tCc/tGc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			757	247	486	2	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt																																												NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	269	489	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3778247	3778247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	69	464	0	ENST00000262367.5:c.6801G>T	p.Gln2267His	p.Q2267H	ENST00000262367	NM_004380.2	2267	caG/caT																																												NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	51	331	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67645885	67645886	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGTTACACGTGTCCACGGCGTTCAAATTTGGATCGTCACATGAAA			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	100	487	0	ENST00000264010.4:c.816_860dup	p.Tyr273_Ser287dup	p.Y273_S287dup	ENST00000264010	NM_006565.3	273	-/AGTTACACGTGTCCACGGCGTTCAAATTTGGATCGTCACATGAAA																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68853221	68853221	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	241	481	0	ENST00000261769.5:c.1605del	p.Asn536IlefsTer21	p.N536Ifs*21	ENST00000261769	NM_004360.3	535	aTt/at																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0014488-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	85	538	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16029456	16029457	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	108	317	0	ENST00000268712.3:c.1573dupA	p.Thr525AsnfsTer11	p.T525Nfs*11	ENST00000268712	NM_006311.3	525	aca/aAca																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112888198	112888198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	91	416	0	ENST00000351677.2:c.214G>A	p.Ala72Thr	p.A72T	ENST00000351677	NM_002834.3	72	Gcc/Acc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	76	285	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	125	595	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190728678	190728678	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	135	827	0	ENST00000441310.2:c.2066G>C	p.Arg689Thr	p.R689T	ENST00000441310	NM_000534.4	689	aGa/aCa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178257	56178257	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	151	745	0	ENST00000399503.3:c.3230C>G	p.Ser1077Ter	p.S1077*	ENST00000399503	NM_005921.1	1077	tCa/tGa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637183	176637183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	82	503	0	ENST00000439151.2:c.1783G>A	p.Glu595Lys	p.E595K	ENST00000439151	NM_022455.4	595	Gag/Aag																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33289660	33289660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	128	426	0	ENST00000374542.5:c.43G>A	p.Glu15Lys	p.E15K	ENST00000374542	NM_001141970.1	15	Gaa/Aaa																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244318	46244318	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	107	499	0	ENST00000334344.6:c.2412A>C	p.Arg804Ser	p.R804S	ENST00000334344	NM_152641.2	804	agA/agC																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061312	38061312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	179	744	0	ENST00000250448.2:c.677A>G	p.Asp226Gly	p.D226G	ENST00000250448	NM_004496.3	226	gAc/gGc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41818321	41818321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	14	30	0	ENST00000373198.4:c.53C>A	p.Pro18Gln	p.P18Q	ENST00000373198	NM_133170.3	18	cCg/cAg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244322	46244331	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAACATAC	CAGAACATAC	-			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	101	508	0	ENST00000334344.6:c.2419_2428del	p.Asn807HisfsTer12	p.N807Hfs*12	ENST00000334344	NM_152641.2	806	CAGAACATACca/ca																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68849654	68849655	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	103	518	0	ENST00000261769.5:c.1561dup	p.Ile521AsnfsTer16	p.I521Nfs*16	ENST00000261769	NM_004360.3	519	-/A																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115982	8115983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	14	176	0	ENST00000346208.3:c.1330dupT	p.Ter444LeufsTer63	p.*444Lfs*63	ENST00000346208		443	ggt/ggTt																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0003756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	130	362	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	319	372	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0003756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	43	153	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	138	271	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	76	165	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	97	485	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023007	27023008	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGC			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	10	16	0	ENST00000324856.7:c.126_128dup	p.Ala45dup	p.A45dup	ENST00000324856	NM_006015.4	45	gag/gaGGCg																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65309827	65309827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	130	642	0	ENST00000342505.4:c.2323G>A	p.Asp775Asn	p.D775N	ENST00000342505	NM_002227.2	775	Gac/Aac																																												NEWRECORD																																		
EPCAM	0	MSKCC	GRCh37	2	47606132	47606132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	40	511	0	ENST00000263735.4:c.596C>A	p.Ser199Tyr	p.S199Y	ENST00000263735	NM_002354.2	199	tCt/tAt																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	401578	401578	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1050972		P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	95	498	0	ENST00000380956.4:c.900G>C	p.Gln300His	p.Q300H	ENST00000380956	NM_001195286.1	300	caG/caC																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63661479	63661479	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	62	539	0	ENST00000279873.7:c.11A>G	p.Asn4Ser	p.N4S	ENST00000279873	NM_032199.2	4	aAc/aGc																																												NEWRECORD																																		
CDK4	0	MSKCC	GRCh37	12	58145094	58145094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	82	533	0	ENST00000257904.6:c.250G>C	p.Asp84His	p.D84H	ENST00000257904	NM_000075.3	84	Gac/Cac																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115109915	115109915	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	40	235	0	ENST00000257566.3:c.1963C>G	p.Leu655Val	p.L655V	ENST00000257566	NM_016569.3	655	Ctg/Gtg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72829549	72829549	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1246	126	960	0	ENST00000268489.5:c.7032C>G	p.Ile2344Met	p.I2344M	ENST00000268489	NM_006885.3	2344	atC/atG																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89348135	89348135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1372	124	1057	1	ENST00000301030.4:c.4815G>T	p.Met1605Ile	p.M1605I	ENST00000301030	NM_001256183.1	1605	atG/atT																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89348849	89348849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1567	187	1084	0	ENST00000301030.4:c.4101G>C	p.Lys1367Asn	p.K1367N	ENST00000301030	NM_001256183.1	1367	aaG/aaC																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7143015	7143015	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145643501		P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	58	442	0	ENST00000302850.5:c.2354C>T	p.Ser785Leu	p.S785L	ENST00000302850	NM_000208.2	785	tCg/tTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577512	7577512	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	134	568	0	ENST00000269305.4:c.769del	p.Leu257TrpfsTer88	p.L257Wfs*88	ENST00000269305	NM_001126112.2	257	Ctg/tg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			770	127	342	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766350	66766351	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGT			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			112	38	68	2	ENST00000374690.3:c.1368_1370dupTGG	p.Gly473dup	p.G473dup	ENST00000374690	NM_000044.3	473	-/GGT																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	88	199	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33287520	33287520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141395832		P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			614	109	181	1	ENST00000374542.5:c.1577G>A	p.Arg526His	p.R526H	ENST00000374542	NM_001141970.1	526	cGc/cAc																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	100	251	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43604533	43604533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	121	369	1	ENST00000355710.3:c.1118C>T	p.Ala373Val	p.A373V	ENST00000355710	NM_020975.4	373	gCg/gTg																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12626153	12626153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	69	170	0	ENST00000251849.4:c.1807C>A	p.Leu603Met	p.L603M	ENST00000251849	NM_002880.3	603	Ctg/Atg																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37053589	37053589	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			614	140	340	0	ENST00000231790.2:c.676C>T	p.Arg226Ter	p.R226*	ENST00000231790	NM_000249.3	226	Cga/Tga																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37092050	37092050	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	161	451	0	ENST00000231790.2:c.2177C>A	p.Ser726Ter	p.S726*	ENST00000231790	NM_000249.3	726	tCa/tAa																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185167842	185167842	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			577	120	274	0	ENST00000265026.3:c.1165A>G	p.Thr389Ala	p.T389A	ENST00000265026	NM_004721.4	389	Acg/Gcg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1293661	1293661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	57	267	0	ENST00000310581.5:c.1340G>A	p.Arg447His	p.R447H	ENST00000310581	NM_198253.2	447	cGc/cAc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30672297	30672297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	48	392	0	ENST00000376406.3:c.4663G>A	p.Ala1555Thr	p.A1555T	ENST00000376406	NM_014641.2	1555	Gcc/Acc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55220320	55220320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	100	314	0	ENST00000275493.2:c.710C>T	p.Ala237Val	p.A237V	ENST00000275493	NM_005228.3	237	gCt/gTt																																												NEWRECORD																																		
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	114	285	0	ENST00000227507.2:c.857C>T	p.Thr286Ile	p.T286I	ENST00000227507	NM_053056.2	286	aCa/aTa																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245270	46245270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			594	106	235	0	ENST00000334344.6:c.3364G>A	p.Val1122Ile	p.V1122I	ENST00000334344	NM_152641.2	1122	Gtt/Att																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2222243	2222243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	116	406	1	ENST00000326181.6:c.527C>T	p.Ala176Val	p.A176V	ENST00000326181	NM_032271.2	176	gCg/gTg																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37681135	37681135	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			214	41	117	0	ENST00000447079.4:c.3304A>T	p.Ile1102Leu	p.I1102L	ENST00000447079	NM_015083.1	1102	Ata/Tta																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78866552	78866552	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	34	300	0	ENST00000306801.3:c.2125C>T	p.Arg709Ter	p.R709*	ENST00000306801	NM_020761.2	709	Cga/Tga																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5214615	5214615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	98	433	0	ENST00000357368.4:c.4451C>T	p.Ser1484Leu	p.S1484L	ENST00000357368	NM_002850.3	1484	tCg/tTg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10610612	10610612	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	99	260	0	ENST00000171111.5:c.98A>G	p.Tyr33Cys	p.Y33C	ENST00000171111	NM_203500.1	33	tAc/tGc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42796721	42796721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	53	211	0	ENST00000575354.2:c.3179G>A	p.Gly1060Asp	p.G1060D	ENST00000575354	NM_015125.3	1060	gGc/gAc																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31395653	31395653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	117	353	0	ENST00000328111.2:c.2506G>A	p.Val836Met	p.V836M	ENST00000328111	NM_006892.3	836	Gtg/Atg																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24176357	24176357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	112	403	1	ENST00000263121.7:c.1148C>T	p.Pro383Leu	p.P383L	ENST00000263121	NM_003073.3	383	cCg/cTg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53225901	53225901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			623	118	415	0	ENST00000375401.3:c.2948G>A	p.Trp983Ter	p.W983*	ENST00000375401	NM_004187.3	983	tGg/tAg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157522033	157522033	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	65	273	0	ENST00000346085.5:c.4308del	p.Gln1437ArgfsTer11	p.Q1437Rfs*11	ENST00000346085	NM_020732.3	1435	ccG/cc																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	406317	406318	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			705	96	363	0	ENST00000399788.2:c.4123dup	p.Cys1375LeufsTer2	p.C1375Lfs*2	ENST00000399788	NM_001042603.1	1375	tgt/tTgt																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445041	49445041	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	52	115	0	ENST00000301067.7:c.2425del	p.Gln809ArgfsTer121	p.Q809Rfs*121	ENST00000301067	NM_003482.3	809	Cag/ag																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007834	45007834	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	113	162	0	ENST00000558401.1:c.285delA	p.Asp96MetfsTer7	p.D96Mfs*7	ENST00000558401	NM_004048.2	94	gAa/ga																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	76	329	0	ENST00000357368.4:c.1821delC	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11097200	11097205	+	inframe_deletion	In_Frame_Del	DEL	GGCCCT	GGCCCT	-			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	62	236	0	ENST00000344626.4:c.708_713del	p.Gly243_Pro244del	p.G243_P244del	ENST00000344626	NM_003072.3	231	GGCCCT/-																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17945793	17945793	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001248-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	99	308	1	ENST00000458235.1:c.2067del	p.Trp690GlyfsTer66	p.W690Gfs*66	ENST00000458235	NM_000215.3	689	ccC/cc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	304	392	1	ENST00000269305.4:c.560-1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187																																													NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185181440	185181440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	108	396	0	ENST00000265026.3:c.1381G>C	p.Glu461Gln	p.E461Q	ENST00000265026	NM_004721.4	461	Gag/Cag																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	705	421	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212295789	212295789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	111	416	1	ENST00000342788.4:c.2524C>T	p.Arg842Trp	p.R842W	ENST00000342788	NM_005235.2	842	Cgg/Tgg																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16082203	16082203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	393	422	0	ENST00000281043.3:c.17C>T	p.Thr6Met	p.T6M	ENST00000281043	NM_005378.4	6	aCg/aTg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29497982	29497982	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	292	513	1	ENST00000389048.3:c.2024C>T	p.Pro675Leu	p.P675L	ENST00000389048	NM_004304.4	675	cCc/cTc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49415594	49415594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	289	392	0	ENST00000301067.7:c.16583G>T	p.Gly5528Val	p.G5528V	ENST00000301067	NM_003482.3	5528	gGa/gTa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49444220	49444220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	433	493	0	ENST00000301067.7:c.3151G>T	p.Val1051Phe	p.V1051F	ENST00000301067	NM_003482.3	1051	Gtt/Ttt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49444812	49444812	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	330	348	0	ENST00000301067.7:c.2654C>T	p.Pro885Leu	p.P885L	ENST00000301067	NM_003482.3	885	cCc/cTc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5240319	5240319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	400	398	0	ENST00000357368.4:c.1595G>A	p.Arg532Gln	p.R532Q	ENST00000357368	NM_002850.3	532	cGg/cAg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11170520	11170520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	190	282	0	ENST00000344626.4:c.4727A>T	p.Glu1576Val	p.E1576V	ENST00000344626	NM_003072.3	1576	gAg/gTg																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81399272	81399273	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	233	315	0	ENST00000222390.5:c.15dup	p.Leu6ThrfsTer36	p.L6Tfs*36	ENST00000222390	NM_000601.4	5	-/A																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	426	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	460	197	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	30	223	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	145	389	1	ENST00000256078.4:c.99T>A	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaA																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114920402	114920402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1453	220	601	0	ENST00000543371.1:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000543371	NM_001198531.1	448	cGg/cAg																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1354	350	695	0	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga																																												NEWRECORD																																		
TSC1	7248	MSKCC	GRCh37	9	135771987	135771988	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCT	rs118203743		P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	55	179	0	ENST00000298552.3:c.3127_3129dup	p.Ser1043dup	p.S1043dup	ENST00000298552	NM_001162426.1	1043	-/AGC																																												NEWRECORD																																		
NKX3-1	0	MSKCC	GRCh37	8	23540198	23540198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	78	134	0	ENST00000380871.4:c.205G>A	p.Ala69Thr	p.A69T	ENST00000380871	NM_006167.3	69	Gcc/Acc																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119111	70119111	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	74	156	0	ENST00000245479.2:c.683C>A	p.Ser228Ter	p.S228*	ENST00000245479	NM_000346.3	228	tCg/tAg																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17954247	17954247	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143586866		P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	169	503	1	ENST00000458235.1:c.362G>A	p.Arg121His	p.R121H	ENST00000458235	NM_000215.3	121	cGc/cAc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48584779	48584788	+	frameshift_variant	Frame_Shift_Del	DEL	GCCATCTTCA	GCCATCTTCA	-			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	152	557	0	ENST00000342988.3:c.859_868del	p.His287ThrfsTer46	p.H287Tfs*46	ENST00000342988	NM_005359.5	286	gGCCATCTTCAg/gg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604766	48604766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	243	455	1	ENST00000342988.3:c.1588del	p.His530ThrfsTer7	p.H530Tfs*7	ENST00000342988	NM_005359.5	530	Cac/ac																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120346	70120347	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCTC			P-0011366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1654	400	772	0	ENST00000245479.2:c.1351_1352insCCCT	p.Tyr451SerfsTer128	p.Y451Sfs*128	ENST00000245479	NM_000346.3	450	tcc/tCCTCcc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	103	250	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	368	293	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0006711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	60	306	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118343789	118343789	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	84	382	0	ENST00000534358.1:c.1915A>G	p.Lys639Glu	p.K639E	ENST00000534358	NM_005933.3	639	Aaa/Gaa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112151244	112151245	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0006711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	107	436	0	ENST00000257430.4:c.893_894dup	p.Ser299ThrfsTer7	p.S299Tfs*7	ENST00000257430	NM_000038.5	296	agc/agCAc																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	97	265	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	10	289	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1154	408	526	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	152	183	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120232	70120232	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1182	389	551	2	ENST00000245479.2:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000245479	NM_000346.3	412	Cag/Tag																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	145	372	2	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																												NEWRECORD																																		
ASXL1	171023	MSKCC	GRCh37	20	31022441	31022442	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs756958159		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	78	150	1	ENST00000375687.4:c.1934dup	p.Gly646TrpfsTer12	p.G646Wfs*12	ENST00000375687	NM_015338.5	642	-/G																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49445526	49445526	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	300	359	1	ENST00000301067.7:c.1940del	p.Pro647HisfsTer283	p.P647Hfs*283	ENST00000301067	NM_003482.3	647	cCa/ca																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	110	305	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																												NEWRECORD																																		
TET1	80312	MSKCC	GRCh37	10	70332153	70332153	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	201	519	3	ENST00000373644.4:c.65del	p.Lys22ArgfsTer23	p.K22Rfs*23	ENST00000373644	NM_030625.2	20	Aaa/aa																																												NEWRECORD																																		
ATM	472	MSKCC	GRCh37	11	108216477	108216477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1216272924		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	287	396	0	ENST00000278616.4:c.8432del	p.Lys2811SerfsTer46	p.K2811Sfs*46	ENST00000278616	NM_000051.3	2809	cAa/ca																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	18	314	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc																																												NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	417	492	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																												NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1742	306	656	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																												NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	132	158	0	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																												NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48881489	48881490	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	114	365	0	ENST00000267163.4:c.219_220del	p.Arg73SerfsTer36	p.R73Sfs*36	ENST00000267163	NM_000321.2	71	AGa/a																																												NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2004	638	975	8	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																												NEWRECORD																																		
KDM5A	5927	MSKCC	GRCh37	12	416953	416953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs774964135		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	434	399	10	ENST00000399788.2:c.3597del	p.Gly1200AspfsTer9	p.G1200Dfs*9	ENST00000399788	NM_001042603.1	1199	aaA/aa																																												NEWRECORD																																		
ERCC5	2073	MSKCC	GRCh37	13	103524612	103524612	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs767399685		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	231	417	7	ENST00000355739.4:c.2751del	p.Lys917AsnfsTer65	p.K917Nfs*65	ENST00000355739	NM_000123.3	915	Aaa/aa																																												NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	171	349	2	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																												NEWRECORD																																		
BLM	641	MSKCC	GRCh37	15	91304139	91304139	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs772495493		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	194	481	8	ENST00000355112.3:c.1544del	p.Asn515MetfsTer16	p.N515Mfs*16	ENST00000355112	NM_000057.2	512	ggA/gg																																												NEWRECORD																																		
HRAS	0	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	267	376	0	ENST00000311189.7:c.37G>A	p.Gly13Ser	p.G13S	ENST00000311189		13	Ggt/Agt																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11097625	11097625	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1338	503	608	0	ENST00000344626.4:c.810delC	p.Met272CysfsTer31	p.M272Cfs*31	ENST00000344626	NM_003072.3	269	Ccc/cc																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131953826	131953826	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	152	394	1	ENST00000265335.6:c.3229C>T	p.Arg1077Ter	p.R1077*	ENST00000265335		1077	Cga/Tga																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15271747	15271747	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	263	392	0	ENST00000263388.2:c.6692del	p.Pro2231GlnfsTer15	p.P2231Qfs*15	ENST00000263388	NM_000435.2	2231	cCa/ca																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89653860	89653860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	89	232	0	ENST00000371953.3:c.158T>C	p.Val53Ala	p.V53A	ENST00000371953	NM_000314.4	53	gTa/gCa																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11175476	11175476	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	111	370	0	ENST00000361445.4:c.7066A>G	p.Ile2356Val	p.I2356V	ENST00000361445	NM_004958.3	2356	Att/Gtt																																												NEWRECORD																																		
CDKN2C	0	MSKCC	GRCh37	1	51436077	51436077	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	147	181	0	ENST00000262662.1:c.37G>T	p.Ala13Ser	p.A13S	ENST00000262662		13	Gct/Tct																																												NEWRECORD																																		
CXCR4	0	MSKCC	GRCh37	2	136873229	136873229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1431	473	760	1	ENST00000241393.3:c.269C>T	p.Thr90Met	p.T90M	ENST00000241393	NM_003467.2	90	aCg/aTg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251859	212251859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	108	167	0	ENST00000342788.4:c.3200G>T	p.Arg1067Leu	p.R1067L	ENST00000342788	NM_005235.2	1067	cGa/cTa																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89498391	89498391	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	97	293	0	ENST00000336596.2:c.2363T>A	p.Ile788Asn	p.I788N	ENST00000336596	NM_005233.5	788	aTc/aAc																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138478143	138478143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	88	348	0	ENST00000289153.2:c.43C>A	p.Leu15Ile	p.L15I	ENST00000289153	NM_006219.2	15	Ctt/Att																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178921383	178921383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	158	439	0	ENST00000263967.3:c.865G>A	p.Ala289Thr	p.A289T	ENST00000263967	NM_006218.2	289	Gct/Act																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467370	66467370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	121	203	0	ENST00000273854.3:c.899G>A	p.Gly300Asp	p.G300D	ENST00000273854	NM_004439.5	300	gGc/gAc																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153245447	153245447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	109	315	1	ENST00000281708.4:c.1744T>C	p.Ser582Pro	p.S582P	ENST00000281708	NM_033632.3	582	Tcg/Ccg																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30673725	30673725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs78556678		P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	284	355	1	ENST00000376406.3:c.3235C>T	p.Arg1079Cys	p.R1079C	ENST00000376406	NM_014641.2	1079	Cgt/Tgt																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2954975	2954975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	358	421	0	ENST00000396946.4:c.2735G>A	p.Arg912Gln	p.R912Q	ENST00000396946	NM_032415.4	912	cGg/cAg																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140549958	140549958	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	184	485	0	ENST00000288602.6:c.193T>A	p.Leu65Met	p.L65M	ENST00000288602	NM_004333.4	65	Ttg/Atg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151878230	151878230	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	146	231	0	ENST00000262189.6:c.6715A>G	p.Thr2239Ala	p.T2239A	ENST00000262189	NM_170606.2	2239	Aca/Gca																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90965495	90965495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	137	358	0	ENST00000265433.3:c.1822G>A	p.Val608Ile	p.V608I	ENST00000265433	NM_002485.4	608	Gta/Ata																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90965761	90965761	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	113	334	0	ENST00000265433.3:c.1556A>G	p.Asp519Gly	p.D519G	ENST00000265433	NM_002485.4	519	gAc/gGc																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145741485	145741485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	320	504	0	ENST00000428558.2:c.1018C>T	p.His340Tyr	p.H340Y	ENST00000428558	NM_004260.3	340	Cac/Tac																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139413912	139413912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	322	424	0	ENST00000277541.6:c.848G>A	p.Cys283Tyr	p.C283Y	ENST00000277541	NM_017617.3	283	tGc/tAc																																												NEWRECORD																																		
YAP1	0	MSKCC	GRCh37	11	102056774	102056774	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	108	370	0	ENST00000282441.5:c.714A>C	p.Gln238His	p.Q238H	ENST00000282441	NM_001130145.2	238	caA/caC																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120888	115120888	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	106	279	0	ENST00000257566.3:c.118T>C	p.Phe40Leu	p.F40L	ENST00000257566	NM_016569.3	40	Ttc/Ctc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32937398	32937398	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	127	331	0	ENST00000380152.3:c.8059G>T	p.Val2687Phe	p.V2687F	ENST00000380152		2687	Gtt/Ttt																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103527717	103527717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	153	398	0	ENST00000355739.4:c.3025C>T	p.Arg1009Cys	p.R1009C	ENST00000355739	NM_000123.3	1009	Cgt/Tgt																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81610516	81610516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	216	382	0	ENST00000298171.2:c.2114C>A	p.Ala705Glu	p.A705E	ENST00000298171	NM_000369.2	705	gCa/gAa																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95572555	95572555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	87	193	0	ENST00000343455.3:c.2810G>A	p.Arg937His	p.R937H	ENST00000343455	NM_177438.2	937	cGc/cAc																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41991141	41991141	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	192	461	0	ENST00000219905.7:c.2092+2T>C		p.X698_splice	ENST00000219905	NM_001164273.1	698																																													NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45003767	45003767	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	241	348	0	ENST00000558401.1:c.23C>A	p.Ala8Asp	p.A8D	ENST00000558401	NM_004048.2	8	gCt/gAt																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88576184	88576184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	214	263	0	ENST00000360948.2:c.1489G>A	p.Gly497Arg	p.G497R	ENST00000360948	NM_001012338.2	497	Ggg/Agg																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88690595	88690595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	171	303	1	ENST00000360948.2:c.435G>T	p.Gln145His	p.Q145H	ENST00000360948	NM_001012338.2	145	caG/caT																																												NEWRECORD																																		
IDH2	0	MSKCC	GRCh37	15	90627503	90627503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	207	279	1	ENST00000330062.3:c.1354C>T	p.Gln452Ter	p.Q452*	ENST00000330062	NM_002168.2	452	Cag/Tag																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2136233	2136233	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	204	295	0	ENST00000219476.3:c.4702T>C	p.Ser1568Pro	p.S1568P	ENST00000219476	NM_000548.3	1568	Tcc/Ccc																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67663356	67663356	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	337	483	0	ENST00000264010.4:c.1757A>G	p.Glu586Gly	p.E586G	ENST00000264010	NM_006565.3	586	gAa/gGa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72991706	72991706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	385	318	1	ENST00000268489.5:c.2339C>T	p.Ala780Val	p.A780V	ENST00000268489	NM_006885.3	780	gCg/gTg																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993545	72993545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1557	513	768	0	ENST00000268489.5:c.500C>T	p.Pro167Leu	p.P167L	ENST00000268489	NM_006885.3	167	cCc/cTc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29654856	29654856	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	113	205	0	ENST00000358273.4:c.5608C>T	p.Arg1870Trp	p.R1870W	ENST00000358273	NM_001042492.2	1870	Cgg/Tgg																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37618910	37618910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	329	458	0	ENST00000447079.4:c.586G>T	p.Asp196Tyr	p.D196Y	ENST00000447079	NM_015083.1	196	Gac/Tac																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47684670	47684670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	167	402	0	ENST00000347630.2:c.779C>T	p.Thr260Met	p.T260M	ENST00000347630	NM_001007230.1	260	aCg/aTg																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63532567	63532567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	261	302	0	ENST00000307078.5:c.2012G>A	p.Arg671His	p.R671H	ENST00000307078	NM_004655.3	671	cGc/cAc																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593398	48593398	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	101	264	0	ENST00000342988.3:c.1149A>G	p.Ile383Met	p.I383M	ENST00000342988	NM_005359.5	383	atA/atG																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2164203	2164203	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	258	399	0	ENST00000398665.3:c.20T>G	p.Leu7Arg	p.L7R	ENST00000398665	NM_032482.2	7	cTg/cGg																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7163169	7163169	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	326	415	0	ENST00000302850.5:c.1903T>C	p.Ser635Pro	p.S635P	ENST00000302850	NM_000208.2	635	Tca/Cca																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50919007	50919007	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1201	503	545	3	ENST00000440232.2:c.2744C>T	p.Ala915Val	p.A915V	ENST00000440232	NM_002691.3	915	gCg/gTg																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31023460	31023460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	135	223	0	ENST00000375687.4:c.2945A>G	p.Lys982Arg	p.K982R	ENST00000375687	NM_015338.5	982	aAg/aGg																																												NEWRECORD																																		
MAPK1	0	MSKCC	GRCh37	22	22123582	22123582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	250	550	0	ENST00000215832.6:c.994G>A	p.Asp332Asn	p.D332N	ENST00000215832	NM_002745.4	332	Gac/Aac																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766229	66766229	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	151	242	0	ENST00000374690.3:c.1241T>C	p.Leu414Pro	p.L414P	ENST00000374690	NM_000044.3	414	cTg/cCg																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66931357	66931357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	299	606	1	ENST00000374690.3:c.1999G>T	p.Gly667Cys	p.G667C	ENST00000374690	NM_000044.3	667	Ggc/Tgc																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29910537	29910540	+	frameshift_variant	Frame_Shift_Del	DEL	CCCA	CCCA	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	53	102	0	ENST00000376809.5:c.78_81del	p.His27ProfsTer2	p.H27Pfs*2	ENST00000376809	NM_002116.7	26	tCCCAc/tc																																												NEWRECORD																																		
MCL1	0	MSKCC	GRCh37	1	150551935	150551946	+	inframe_deletion	In_Frame_Del	DEL	GCCGGCCCCCAA	GCCGGCCCCCAA	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	248	359	0	ENST00000369026.2:c.61_72del	p.Leu21_Gly24del	p.L21_G24del	ENST00000369026	NM_021960.4	21	TTGGGGGCCGGC/-																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112116587	112116587	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	88	260	0	ENST00000257430.4:c.636del	p.Lys212AsnfsTer7	p.K212Nfs*7	ENST00000257430	NM_000038.5	211	gAa/ga																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47044511	47044511	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	330	453	0	ENST00000329236.7:c.1778delA	p.Asn593IlefsTer33	p.N593Ifs*33	ENST00000329236	NM_001204466.1	592	Aaa/aa																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106536080	106536080	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	115	212	1	ENST00000369096.4:c.51del	p.Lys18SerfsTer7	p.K18Sfs*7	ENST00000369096	NM_001198.3	16	gCc/gc																																												NEWRECORD																																		
SOCS1	0	MSKCC	GRCh37	16	11348998	11348998	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	108	189	0	ENST00000332029.2:c.338del	p.Phe113SerfsTer5	p.F113Sfs*5	ENST00000332029	NM_003745.1	113	tTc/tc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8500845	8500845	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	158	317	3	ENST00000356435.5:c.2037del	p.Lys679AsnfsTer9	p.K679Nfs*9	ENST00000356435		679	aaA/aa																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766348	66766348	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	42	69	0	ENST00000374690.3:c.1364del	p.Gly455ValfsTer24	p.G455Vfs*24	ENST00000374690	NM_000044.3	454	Ggg/gg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426606	49426611	+	inframe_deletion	In_Frame_Del	DEL	TGTTGC	TGTTGC	-			P-0008721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	356	541	0	ENST00000301067.7:c.11877_11882del	p.Gln3964_Gln3965del	p.Q3964_Q3965del	ENST00000301067	NM_003482.3	3959	caGCAACAa/caa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	86	515	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	63	415	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	19	250	2	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023830	27023831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	66	371	1	ENST00000324856.7:c.941dupG	p.Asp315ArgfsTer85	p.D315Rfs*85	ENST00000324856	NM_006015.4	312	-/G																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93967831	93967831	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	63	736	0	ENST00000369303.4:c.2096G>C	p.Gly699Ala	p.G699A	ENST00000369303	NM_004440.3	699	gGg/gCg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117710593	117710593	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145765584		P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	33	417	1	ENST00000368508.3:c.1679G>A	p.Arg560His	p.R560H	ENST00000368508	NM_002944.2	560	cGc/cAc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157495252	157495252	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	33	297	0	ENST00000346085.5:c.3135+1G>T		p.X1045_splice	ENST00000346085	NM_020732.3	1045																																													NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39932920	39932920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	110	473	6	ENST00000378444.4:c.1679C>T	p.Ser560Leu	p.S560L	ENST00000378444	NM_001123385.1	560	tCa/tTa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175888	112175894	+	frameshift_variant	Frame_Shift_Del	DEL	AATGGGA	AATGGGA	-			P-0013146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	32	302	0	ENST00000257430.4:c.4598_4604del	p.Asn1533MetfsTer30	p.N1533Mfs*30	ENST00000257430	NM_000038.5	1533	AATGGGAat/at																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	597	582	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0006789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	509	517	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55242494	55242494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	506	474	0	ENST00000275493.2:c.2264C>G	p.Ala755Gly	p.A755G	ENST00000275493	NM_005228.3	755	gCc/gGc																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8074100	8074101	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0006789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1929	340	919	1	ENST00000377482.5:c.557_558dup	p.Thr187LeufsTer61	p.T187Lfs*61	ENST00000377482	NM_018948.3	186	-/CT																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0003070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	168	331	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0003070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	73	314	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17941409	17941409	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	66	196	0	ENST00000458235.1:c.2999C>A	p.Ser1000Ter	p.S1000*	ENST00000458235	NM_000215.3	1000	tCg/tAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577120	7577121	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCA			P-0003070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	202	466	0	ENST00000269305.4:c.815_817dup	p.Val272_Arg273insLeu	p.V272_R273insL	ENST00000269305	NM_001126112.2	273	cgt/cTGCgt																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0002717-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			701	90	571	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002717-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			749	245	505	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916944	178916946	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0002717-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	85	345	0	ENST00000263967.3:c.332_334delAGA	p.Lys111del	p.K111del	ENST00000263967	NM_006218.2	111	AAG/-																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002717-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	107	313	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002717-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	107	313	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga																																												NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128752960	128752960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002717-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	171	471	0	ENST00000377970.2:c.1121A>G	p.His374Arg	p.H374R	ENST00000377970	NM_002467.4	374	cAc/cGc																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2134230	2134230	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148527903		P-0002717-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	102	473	0	ENST00000219476.3:c.4007C>T	p.Ser1336Leu	p.S1336L	ENST00000219476	NM_000548.3	1336	tCg/tTg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27089696	27089697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002717-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			619	84	453	0	ENST00000324856.7:c.2657dup	p.Pro887ThrfsTer49	p.P887Tfs*49	ENST00000324856	NM_006015.4	884	-/C																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002700-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	108	261	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
PIK3CD	0	MSKCC	GRCh37	1	9778785	9778785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002700-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	54	223	0	ENST00000377346.4:c.1054G>A	p.Glu352Lys	p.E352K	ENST00000377346	NM_005026.3	352	Gag/Aag																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	398843	398843	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002700-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	77	396	0	ENST00000380956.4:c.653G>C	p.Gly218Ala	p.G218A	ENST00000380956	NM_001195286.1	218	gGa/gCa																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43604517	43604517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002700-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	84	403	0	ENST00000355710.3:c.1102C>T	p.Arg368Cys	p.R368C	ENST00000355710	NM_020975.4	368	Cgc/Tgc																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	348025	348025	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002700-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	66	354	0	ENST00000262320.3:c.1481C>G	p.Pro494Arg	p.P494R	ENST00000262320	NM_003502.3	494	cCg/cGg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68856084	68856085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0002700-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			161	87	469	0	ENST00000261769.5:c.1893dupA	p.His632ThrfsTer31	p.H632Tfs*31	ENST00000261769	NM_004360.3	631	aca/acAa																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	239	377	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	171	383	1	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	171	315	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c																																												NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	206	300	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243716032	243716032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	68	336	0	ENST00000263826.5:c.1162C>T	p.Arg388Cys	p.R388C	ENST00000263826	NM_005465.4	388	Cgc/Tgc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11190714	11190714	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199646470		P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	94	352	0	ENST00000361445.4:c.5485A>G	p.Thr1829Ala	p.T1829A	ENST00000361445	NM_004958.3	1829	Acc/Gcc																																												NEWRECORD																																		
SDHB	0	MSKCC	GRCh37	1	17350520	17350520	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	127	442	0	ENST00000375499.3:c.590C>T	p.Pro197Leu	p.P197L	ENST00000375499	NM_003000.2	197	cCc/cTc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27094383	27094383	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	36	342	0	ENST00000324856.7:c.3091A>G	p.Thr1031Ala	p.T1031A	ENST00000324856	NM_006015.4	1031	Act/Gct																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178096135	178096135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	96	334	0	ENST00000397062.3:c.1196C>A	p.Ser399Tyr	p.S399Y	ENST00000397062	NM_006164.4	399	tCt/tAt																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204735534	204735534	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	77	324	0	ENST00000302823.3:c.335T>C	p.Val112Ala	p.V112A	ENST00000302823	NM_005214.4	112	gTg/gCg																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227661662	227661662	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	63	294	0	ENST00000305123.5:c.1793A>G	p.His598Arg	p.H598R	ENST00000305123	NM_005544.2	598	cAc/cGc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187538866	187538866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	230	284	0	ENST00000441802.2:c.8874A>G	p.Ile2958Met	p.I2958M	ENST00000441802	NM_005245.3	2958	atA/atG																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86667956	86667956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	236	393	2	ENST00000274376.6:c.1720G>A	p.Ala574Thr	p.A574T	ENST00000274376	NM_002890.2	574	Gca/Aca																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112116553	112116553	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	282	423	0	ENST00000257430.4:c.598A>T	p.Met200Leu	p.M200L	ENST00000257430	NM_000038.5	200	Atg/Ttg																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056109	26056109	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	112	208	0	ENST00000343677.2:c.548A>G	p.Lys183Arg	p.K183R	ENST00000343677	NM_005319.3	183	aAg/aGg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55268059	55268059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	143	466	1	ENST00000275493.2:c.2899G>A	p.Glu967Lys	p.E967K	ENST00000275493	NM_005228.3	967	Gaa/Aaa																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140508697	140508697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	141	305	0	ENST00000288602.6:c.603G>T	p.Gln201His	p.Q201H	ENST00000288602	NM_004333.4	201	caG/caT																																												NEWRECORD																																		
XRCC2	0	MSKCC	GRCh37	7	152345855	152345855	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1638	373	596	0	ENST00000359321.1:c.715A>G	p.Met239Val	p.M239V	ENST00000359321	NM_005431.1	239	Atg/Gtg																																												NEWRECORD																																		
LMO1	0	MSKCC	GRCh37	11	8248561	8248561	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	109	492	0	ENST00000335790.3:c.326A>T	p.Tyr109Phe	p.Y109F	ENST00000335790	NM_002315.2	109	tAt/tTt																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100933219	100933219	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	163	704	0	ENST00000325455.5:c.2171G>T	p.Arg724Met	p.R724M	ENST00000325455	NM_001202474.3	724	aGg/aTg																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102813366	102813366	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	97	436	0	ENST00000307046.8:c.323A>G	p.Tyr108Cys	p.Y108C	ENST00000307046	NM_001111285.1	108	tAt/tGt																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28931705	28931705	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	90	390	0	ENST00000282397.4:c.2234A>G	p.Tyr745Cys	p.Y745C	ENST00000282397	NM_002019.4	745	tAc/tGc																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110434503	110434503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	68	301	0	ENST00000375856.3:c.3898G>A	p.Gly1300Ser	p.G1300S	ENST00000375856	NM_003749.2	1300	Ggc/Agc																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30133176	30133176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	128	532	2	ENST00000263025.4:c.322C>T	p.Arg108Trp	p.R108W	ENST00000263025	NM_002746.2	108	Cgg/Tgg																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63530141	63530141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	115	468	0	ENST00000307078.5:c.2294T>C	p.Val765Ala	p.V765A	ENST00000307078	NM_004655.3	765	gTt/gCt																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11143987	11143987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	167	342	0	ENST00000344626.4:c.3568G>A	p.Ala1190Thr	p.A1190T	ENST00000344626	NM_003072.3	1190	Gcc/Acc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72830441	72830441	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	79	415	0	ENST00000268489.5:c.6140delC	p.Pro2047LeufsTer54	p.P2047Lfs*54	ENST00000268489	NM_006885.3	2047	cCt/ct																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187517815	187517815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	78	314	0	ENST00000441802.2:c.12879del	p.His4293GlnfsTer56	p.H4293Qfs*56	ENST00000441802	NM_005245.3	4293	caC/ca																																												NEWRECORD																																		
EPHA5	2044	MSKCC	GRCh37	4	66286237	66286238	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	360	480	0	ENST00000273854.3:c.1448dup	p.Asn483LysfsTer21	p.N483Kfs*21	ENST00000273854	NM_004439.5	483	aac/aaAc																																												NEWRECORD																																		
PNRC1	10957	MSKCC	GRCh37	6	89793677	89793677	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	129	450	0	ENST00000336032.3:c.752del	p.Lys251SerfsTer14	p.K251Sfs*14	ENST00000336032	NM_006813.2	249	gAa/ga																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157222606	157222606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	190	416	0	ENST00000346085.5:c.1876del	p.Gln626ArgfsTer42	p.Q626Rfs*42	ENST00000346085	NM_020732.3	625	Ccc/cc																																												NEWRECORD																																		
AURKB	0	MSKCC	GRCh37	17	8110176	8110177	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0006115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	70	376	0	ENST00000585124.1:c.428_429del	p.Tyr143PhefsTer3	p.Y143Ffs*3	ENST00000585124	NM_004217.3	143	tAT/t																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			984	330	786	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			544	88	649	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	62	634	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	48	292	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11132465	11132465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1180	194	807	1	ENST00000344626.4:c.2681C>T	p.Thr894Met	p.T894M	ENST00000344626	NM_003072.3	894	aCg/aTg																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114711246	114711247	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	114	546	0	ENST00000543371.1:c.263dup	p.Arg89GlufsTer8	p.R89Efs*8	ENST00000543371	NM_001198531.1	87	-/A																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81979791	81979791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014863-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	85	469	1	ENST00000359376.3:c.3493G>A	p.Val1165Ile	p.V1165I	ENST00000359376	NM_002661.3	1165	Gtt/Att																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	168	341	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212285225	212285225	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			798	198	346	0	ENST00000342788.4:c.3076C>T	p.Gln1026Ter	p.Q1026*	ENST00000342788	NM_005235.2	1026	Cag/Tag																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55269458	55269458	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1112	224	417	0	ENST00000275493.2:c.3145T>C	p.Cys1049Arg	p.C1049R	ENST00000275493	NM_005228.3	1049	Tgc/Cgc																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69203009	69203009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1063	211	353	1	ENST00000462284.1:c.36G>T	p.Met12Ile	p.M12I	ENST00000462284	NM_002392.5	12	atG/atT																																												NEWRECORD																																		
LATS2	0	MSKCC	GRCh37	13	21553900	21553900	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			852	193	457	1	ENST00000382592.4:c.2702T>A	p.Val901Glu	p.V901E	ENST00000382592	NM_014572.2	901	gTg/gAg																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59763506	59763506	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	115	255	0	ENST00000259008.2:c.2596C>T	p.Gln866Ter	p.Q866*	ENST00000259008	NM_032043.2	866	Cag/Tag																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17945780	17945781	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			835	151	315	0	ENST00000458235.1:c.2079dup	p.Glu694ArgfsTer10	p.E694Rfs*10	ENST00000458235	NM_000215.3	693	-/C																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0002876-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	200	352	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13971133	13971133	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002876-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	73	232	0	ENST00000405192.2:c.796G>T	p.Asp266Tyr	p.D266Y	ENST00000405192	NM_001163147.1	266	Gac/Tac																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509081	106509081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187257485		P-0002876-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	119	368	0	ENST00000359195.3:c.1075C>T	p.Arg359Cys	p.R359C	ENST00000359195	NM_002649.2	359	Cgc/Tgc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0002876-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	290	429	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	44	393	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37866444	37866444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	51	641	0	ENST00000269571.5:c.749C>T	p.Ser250Phe	p.S250F	ENST00000269571		250	tCt/tTt																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	31	263	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	23	428	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3843447	3843447	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	74	570	1	ENST00000262367.5:c.1156C>T	p.Arg386Ter	p.R386*	ENST00000262367	NM_004380.2	386	Cga/Tga																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45860556	45860556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	77	675	2	ENST00000391945.4:c.1451C>T	p.Thr484Met	p.T484M	ENST00000391945	NM_000400.3	484	aCg/aTg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27059176	27059176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	51	736	0	ENST00000324856.7:c.1813C>T	p.Gln605Ter	p.Q605*	ENST00000324856	NM_006015.4	605	Caa/Taa																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29917875	29917875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	41	656	0	ENST00000389048.3:c.793G>A	p.Glu265Lys	p.E265K	ENST00000389048	NM_004304.4	265	Gag/Aag																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190656538	190656538	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	36	612	0	ENST00000441310.2:c.3G>A	p.Met1?	p.M1?	ENST00000441310	NM_000534.4	1	atG/atA																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183665	10183665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	90	574	0	ENST00000256474.2:c.134C>G	p.Pro45Arg	p.P45R	ENST00000256474	NM_000551.3	45	cCg/cGg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47125512	47125512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	41	836	0	ENST00000409792.3:c.5758G>A	p.Glu1920Lys	p.E1920K	ENST00000409792	NM_014159.6	1920	Gag/Aag																																												NEWRECORD																																		
SOX2	0	MSKCC	GRCh37	3	181430398	181430398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	83	683	0	ENST00000325404.1:c.250G>A	p.Glu84Lys	p.E84K	ENST00000325404	NM_003106.3	84	Gag/Aag																																												NEWRECORD																																		
FAM175A	0	MSKCC	GRCh37	4	84390185	84390185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	35	461	0	ENST00000321945.7:c.596G>A	p.Ser199Asn	p.S199N	ENST00000321945	NM_139076.2	199	aGc/aAc																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153245404	153245404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	29	692	0	ENST00000281708.4:c.1787C>G	p.Ser596Cys	p.S596C	ENST00000281708	NM_033632.3	596	tCt/tGt																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38960510	38960510	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	56	512	0	ENST00000357387.3:c.1841A>G	p.Glu614Gly	p.E614G	ENST00000357387	NM_152756.3	614	gAa/gGa																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32163813	32163813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	47	363	0	ENST00000375023.3:c.5413G>A	p.Asp1805Asn	p.D1805N	ENST00000375023	NM_004557.3	1805	Gac/Aac																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157510845	157510845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	66	665	0	ENST00000346085.5:c.3620C>T	p.Pro1207Leu	p.P1207L	ENST00000346085	NM_020732.3	1207	cCa/cTa																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50455151	50455151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	28	363	0	ENST00000331340.3:c.698C>A	p.Pro233Gln	p.P233Q	ENST00000331340	NM_006060.4	233	cCg/cAg																																												NEWRECORD																																		
PPP6C	0	MSKCC	GRCh37	9	127915874	127915874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	59	909	2	ENST00000373547.4:c.607G>A	p.Asp203Asn	p.D203N	ENST00000373547	NM_002721.4	203	Gat/Aat																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118375239	118375239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	28	575	0	ENST00000534358.1:c.8632C>G	p.Leu2878Val	p.L2878V	ENST00000534358	NM_005933.3	2878	Ctg/Gtg																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18491483	18491483	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	26	533	0	ENST00000266497.5:c.1395+1G>A		p.X465_splice	ENST00000266497		465																																													NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88799278	88799278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	59	683	1	ENST00000360948.2:c.107G>A	p.Cys36Tyr	p.C36Y	ENST00000360948	NM_001012338.2	36	tGt/tAt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72827870	72827870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	91	953	0	ENST00000268489.5:c.8711A>G	p.Lys2904Arg	p.K2904R	ENST00000268489	NM_006885.3	2904	aAg/aGg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29701088	29701088	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	24	480	0	ENST00000358273.4:c.8435G>A	p.Arg2812Gln	p.R2812Q	ENST00000358273	NM_001042492.2	2812	cGa/cAa																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48584739	48584739	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	44	744	0	ENST00000342988.3:c.817A>T	p.Thr273Ser	p.T273S	ENST00000342988	NM_005359.5	273	Act/Tct																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46254148	46254148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	47	1002	0	ENST00000371998.3:c.280G>A	p.Asp94Asn	p.D94N	ENST00000371998		94	Gat/Aat																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44942739	44942739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	43	423	0	ENST00000377967.4:c.3319C>T	p.Pro1107Ser	p.P1107S	ENST00000377967	NM_021140.2	1107	Cct/Tct																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47039647	47039647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	94	330	2	ENST00000329236.7:c.865C>T	p.His289Tyr	p.H289Y	ENST00000329236	NM_001204466.1	289	Cac/Tac																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106497	27106498	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1300	102	820	0	ENST00000324856.7:c.6109dup	p.Gln2037ProfsTer62	p.Q2037Pfs*62	ENST00000324856	NM_006015.4	2036	-/C																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	131	304	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	200	409	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36939140	36939140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	344	688	1	ENST00000361632.4:c.569G>T	p.Arg190Leu	p.R190L	ENST00000361632		190	cGc/cTc																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114710622	114710622	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1375	350	690	2	ENST00000543371.1:c.107C>A	p.Ser36Ter	p.S36*	ENST00000543371	NM_001198531.1	36	tCg/tAg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29557286	29557286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	124	367	0	ENST00000358273.4:c.2999G>A	p.Arg1000His	p.R1000H	ENST00000358273	NM_001042492.2	1000	cGt/cAt																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53239880	53239880	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	371	332	0	ENST00000375401.3:c.1561T>A	p.Tyr521Asn	p.Y521N	ENST00000375401	NM_004187.3	521	Tac/Aac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578247	7578248	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	253	518	0	ENST00000269305.4:c.601_602del	p.Leu201AlafsTer7	p.L201Afs*7	ENST00000269305	NM_001126112.2	201	TTg/g																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174863	112174864	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	111	329	0	ENST00000257430.4:c.3573_3574del	p.Lys1192ThrfsTer15	p.K1192Tfs*15	ENST00000257430	NM_000038.5	1191	cAG/c																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175377	112175378	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	61	278	0	ENST00000257430.4:c.4086_4087insT	p.Lys1363Ter	p.K1363*	ENST00000257430	NM_000038.5	1362	-/T																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	43	640	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0014704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	53	500	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0014704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	53	500	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																												NEWRECORD																																		
CDKN2A	1029	MSKCC	GRCh37	9	21971124	21971125	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0014704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			80	53	500	0	ENST00000304494.5:c.233_234del	p.Leu78HisfsTer41	p.L78Hfs*41	ENST00000304494	NM_000077.4	78	cTC/c																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88680655	88680655	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142726068		P-0014704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	23	528	1	ENST00000360948.2:c.602G>A	p.Arg201His	p.R201H	ENST00000360948	NM_001012338.2	201	cGc/cAc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578227	7578230	+	frameshift_variant	Frame_Shift_Del	DEL	CATC	CATC	-			P-0014704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			117	28	841	2	ENST00000269305.4:c.619_622del	p.Asp207ThrfsTer39	p.D207Tfs*39	ENST00000269305	NM_001126112.2	207	GATGac/ac																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220439756	220439757	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014704-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			111	28	763	0	ENST00000243786.2:c.610dup	p.Thr204AsnfsTer7	p.T204Nfs*7	ENST00000243786	NM_002191.3	203	-/A																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	262	558	2	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa																																												NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	229	442	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	127	333	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	85	295	2	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41274897	41274897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	144	390	0	ENST00000349496.5:c.1147T>C	p.Trp383Arg	p.W383R	ENST00000349496	NM_001904.3	383	Tgg/Cgg																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41739866	41739866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	285	619	0	ENST00000242208.4:c.107C>T	p.Pro36Leu	p.P36L	ENST00000242208	NM_002192.2	36	cCg/cTg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152008941	152008941	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	138	523	0	ENST00000262189.6:c.681A>C	p.Glu227Asp	p.E227D	ENST00000262189	NM_170606.2	227	gaA/gaC																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56488244	56488244	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	182	342	1	ENST00000267101.3:c.1763G>T	p.Ser588Ile	p.S588I	ENST00000267101	NM_001982.3	588	aGc/aTc																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69230456	69230456	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	138	372	0	ENST00000462284.1:c.845A>G	p.Tyr282Cys	p.Y282C	ENST00000462284	NM_002392.5	282	tAt/tGt																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67479845	67479845	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	185	310	0	ENST00000327367.4:c.1152C>G	p.Tyr384Ter	p.Y384*	ENST00000327367	NM_005902.3	384	taC/taG																																												NEWRECORD																																		
RHEB	0	MSKCC	GRCh37	7	151167662	151167665	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0008782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	187	431	0	ENST00000262187.5:c.454_457del	p.Glu152IlefsTer11	p.E152Ifs*11	ENST00000262187	NM_005614.3	152	GAAAat/at																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	241	786	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149439341	149439341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	153	836	0	ENST00000286301.3:c.2054C>A	p.Pro685His	p.P685H	ENST00000286301	NM_005211.3	685	cCc/cAc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44870231	44870231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	152	623	3	ENST00000377967.4:c.410G>T	p.Gly137Val	p.G137V	ENST00000377967	NM_021140.2	137	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	201	995	0	ENST00000269305.4:c.853G>C	p.Glu285Gln	p.E285Q	ENST00000269305	NM_001126112.2	285	Gag/Cag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27102078	27102078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	107	1168	0	ENST00000324856.7:c.5004G>T	p.Glu1668Asp	p.E1668D	ENST00000324856	NM_006015.4	1668	gaG/gaT																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48025945	48025945	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	268	1047	0	ENST00000234420.5:c.823A>G	p.Ser275Gly	p.S275G	ENST00000234420	NM_000179.2	275	Agt/Ggt																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	70008571	70008571	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	48	340	0	ENST00000352241.4:c.1161G>T	p.Gln387His	p.Q387H	ENST00000352241	NM_198159.2	387	caG/caT																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71021779	71021779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	84	847	0	ENST00000318789.4:c.1579G>A	p.Glu527Lys	p.E527K	ENST00000318789	NM_032682.5	527	Gaa/Aaa																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89468399	89468399	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	48	440	0	ENST00000336596.2:c.1933A>G	p.Lys645Glu	p.K645E	ENST00000336596	NM_005233.5	645	Aaa/Gaa																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134670744	134670744	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	56	615	1	ENST00000398015.3:c.655G>C	p.Val219Leu	p.V219L	ENST00000398015	NM_004441.4	219	Gtg/Ctg																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134968233	134968233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	79	968	1	ENST00000398015.3:c.2746G>T	p.Val916Leu	p.V916L	ENST00000398015	NM_004441.4	916	Gtg/Ttg																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55970884	55970884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	185	879	1	ENST00000263923.4:c.1913G>A	p.Gly638Glu	p.G638E	ENST00000263923	NM_002253.2	638	gGa/gAa																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106197555	106197555	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	199	962	0	ENST00000380013.4:c.5888C>T	p.Thr1963Ile	p.T1963I	ENST00000380013	NM_001127208.2	1963	aCt/aTt																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143029251	143029251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	21	505	0	ENST00000262992.4:c.2369C>T	p.Pro790Leu	p.P790L	ENST00000262992	NM_001101669.1	790	cCt/cTt																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143129593	143129593	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	37	630	0	ENST00000262992.4:c.1057A>G	p.Ser353Gly	p.S353G	ENST00000262992	NM_001101669.1	353	Agc/Ggc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187542399	187542399	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	59	738	0	ENST00000441802.2:c.5341A>T	p.Asn1781Tyr	p.N1781Y	ENST00000441802	NM_005245.3	1781	Aac/Tac																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57750453	57750453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	101	936	1	ENST00000274289.3:c.2015G>T	p.Arg672Leu	p.R672L	ENST00000274289	NM_006622.3	672	cGa/cTa																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056519	26056519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	78	282	0	ENST00000343677.2:c.138G>T	p.Lys46Asn	p.K46N	ENST00000343677	NM_005319.3	46	aaG/aaT																																												NEWRECORD																																		
HIST1H3E	0	MSKCC	GRCh37	6	26225519	26225519	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1460	257	1759	1	ENST00000360408.1:c.137C>A	p.Thr46Asn	p.T46N	ENST00000360408	NM_003532.2	46	aCc/aAc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55233050	55233050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	7137	764	2	ENST00000275493.2:c.1800G>T	p.Met600Ile	p.M600I	ENST00000275493	NM_005228.3	600	atG/atT																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8633340	8633340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	84	1022	0	ENST00000356435.5:c.329C>T	p.Ser110Phe	p.S110F	ENST00000356435		110	tCc/tTc																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63760000	63760000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	184	582	0	ENST00000279873.7:c.653G>T	p.Arg218Met	p.R218M	ENST00000279873	NM_032199.2	218	aGg/aTg																																												NEWRECORD																																		
SDHD	0	MSKCC	GRCh37	11	111958635	111958635	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	117	518	0	ENST00000375549.3:c.107A>T	p.Gln36Leu	p.Q36L	ENST00000375549	NM_003002.3	36	cAg/cTg																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26975688	26975688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	202	1167	2	ENST00000381527.3:c.1196C>A	p.Pro399His	p.P399H	ENST00000381527	NM_001260.1	399	cCc/cAc																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110436216	110436216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	87	496	0	ENST00000375856.3:c.2185G>T	p.Ala729Ser	p.A729S	ENST00000375856	NM_003749.2	729	Gcc/Tcc																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95579545	95579545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	28	414	0	ENST00000343455.3:c.1924C>T	p.Pro642Ser	p.P642S	ENST00000343455	NM_177438.2	642	Cca/Tca																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88472450	88472450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	130	826	0	ENST00000360948.2:c.2105G>T	p.Arg702Ile	p.R702I	ENST00000360948	NM_001012338.2	702	aGa/aTa																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99442735	99442735	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	234	995	0	ENST00000268035.6:c.1132A>G	p.Met378Val	p.M378V	ENST00000268035	NM_000875.3	378	Atg/Gtg																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2220682	2220682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	167	1028	2	ENST00000326181.6:c.299G>T	p.Ser100Ile	p.S100I	ENST00000326181	NM_032271.2	100	aGc/aTc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858247	9858247	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	57	834	0	ENST00000330684.3:c.3154C>G	p.Leu1052Val	p.L1052V	ENST00000330684	NM_001134407.1	1052	Ctt/Gtt																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	736898	736898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	55	940	0	ENST00000314574.4:c.1201A>G	p.Asn401Asp	p.N401D	ENST00000314574	NM_005433.3	401	Aat/Gat																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7117327	7117327	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	224	927	1	ENST00000302850.5:c.3889A>T	p.Ser1297Cys	p.S1297C	ENST00000302850	NM_000208.2	1297	Agc/Tgc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42791393	42791393	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	190	874	3	ENST00000575354.2:c.452+1G>T		p.X151_splice	ENST00000575354	NM_015125.3	151																																													NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31019150	31019150	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	63	976	0	ENST00000375687.4:c.745G>C	p.Glu249Gln	p.E249Q	ENST00000375687	NM_015338.5	249	Gaa/Caa																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31386436	31386436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	51	768	1	ENST00000328111.2:c.1661C>T	p.Thr554Met	p.T554M	ENST00000328111	NM_006892.3	554	aCg/aTg																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45007791	45007801	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTCTTTCTA	TGGTCTTTCTA	-			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	121	762	0	ENST00000558401.1:c.239_249del	p.Trp80SerfsTer6	p.W80Sfs*6	ENST00000558401	NM_004048.2	80	TGGTCTTTCTAt/t																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248342	212248343	+	frameshift_variant,stop_lost	Frame_Shift_Del	DEL	AC	AC	-			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	59	645	0	ENST00000342788.4:c.3924_3925del	p.Ter1309SerfsTer7	p.*1309Sfs*7	ENST00000342788	NM_005235.2	1308	gtGTaa/gtaa																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55133479	55133479	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	129	821	0	ENST00000257290.5:c.784del	p.Glu262LysfsTer14	p.E262Kfs*14	ENST00000257290	NM_006206.4	261	ctG/ct																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57858948	57858949	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	107	1439	0	ENST00000228682.2:c.447dup	p.Gly150TrpfsTer9	p.G150Wfs*9	ENST00000228682	NM_005269.2	148	-/T																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57753937	57753938	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0011293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	128	911	0	ENST00000274289.3:c.686_687delinsTT	p.Arg229Ile	p.R229I	ENST00000274289	NM_006622.3	229	aGG/aTT																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	20	684	1	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa																																												NEWRECORD																																		
CTCF	10664	MSKCC	GRCh37	16	67645338	67645339	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs1233586379		P-0012363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	18	524	0	ENST00000264010.4:c.610dup	p.Thr204AsnfsTer26	p.T204Nfs*26	ENST00000264010	NM_006565.3	201	-/A																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56481671	56481671	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	40	744	0	ENST00000267101.3:c.706T>C	p.Ser236Pro	p.S236P	ENST00000267101	NM_001982.3	236	Tca/Cca																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67116168	67116168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	34	721	1	ENST00000412916.2:c.452G>A	p.Arg151His	p.R151H	ENST00000412916		151	cGc/cAc																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6042136	6042136	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0012363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	45	415	0	ENST00000265849.7:c.485T>G	p.Leu162Ter	p.L162*	ENST00000265849	NM_000535.5	162	tTa/tGa																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46266465	46266465	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	32	1059	0	ENST00000371998.3:c.2450T>G	p.Ile817Arg	p.I817R	ENST00000371998		817	aTa/aGa																																												NEWRECORD																																		
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0001460-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			461	67	229	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001460-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	105	156	0	ENST00000269305.4:c.472C>G	p.Arg158Gly	p.R158G	ENST00000269305	NM_001126112.2	158	Cgc/Ggc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7572932	7572933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0001460-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			849	89	323	0	ENST00000269305.4:c.1176dupA	p.Asp393ArgfsTer78	p.D393Rfs*78	ENST00000269305	NM_001126112.2	392	-/A																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	45	249	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	48	435	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	147	435	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180048631	180048631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	104	278	0	ENST00000261937.6:c.1931C>T	p.Ala644Val	p.A644V	ENST00000261937	NM_182925.4	644	gCg/gTg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	211	441	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	254	437	1	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64135691	64135691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151034403		P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	215	330	0	ENST00000334205.4:c.1159C>T	p.Arg387Trp	p.R387W	ENST00000334205	NM_003942.2	387	Cgg/Tgg																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119884	70119884	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	269	400	0	ENST00000245479.2:c.886C>T	p.Gln296Ter	p.Q296*	ENST00000245479	NM_000346.3	296	Cag/Tag																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006910-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	889	723	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061463	38061463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006910-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			423	236	552	0	ENST00000250448.2:c.526A>G	p.Ile176Val	p.I176V	ENST00000250448	NM_004496.3	176	Atc/Gtc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151859846	151859846	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006910-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			295	162	295	1	ENST00000262189.6:c.10816A>T	p.Arg3606Ter	p.R3606*	ENST00000262189	NM_170606.2	3606	Aga/Tga																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120854	115120854	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006910-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			311	200	363	0	ENST00000257566.3:c.152delC	p.Ala51GlyfsTer37	p.A51Gfs*37	ENST00000257566	NM_016569.3	51	gCg/gg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68847253	68847253	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006910-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			228	278	638	0	ENST00000261769.5:c.1175delT	p.Val392GlufsTer5	p.V392Efs*5	ENST00000261769	NM_004360.3	392	gTa/ga																																												NEWRECORD																																		
RB1	5925	MSKCC	GRCh37	13	48881488	48881489	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0006910-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			262	115	411	0	ENST00000267163.4:c.219_220dup	p.Ala74GlufsTer4	p.A74Efs*4	ENST00000267163	NM_000321.2	70	-/AG																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10031815	10031815	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006910-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			443	205	513	0	ENST00000330684.3:c.1007+1G>A		p.X336_splice	ENST00000330684	NM_001134407.1	336																																													NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55594198	55594198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006910-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			461	145	426	0	ENST00000288135.5:c.1901G>A	p.Arg634Gln	p.R634Q	ENST00000288135	NM_000222.2	634	cGg/cAg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	277	389	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766105	66766105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	63	114	0	ENST00000374690.3:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000374690	NM_000044.3	373	Gga/Aga																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3807363	3807364	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	166	276	0	ENST00000262367.5:c.3623dupC	p.Gln1209ThrfsTer25	p.Q1209Tfs*25	ENST00000262367	NM_004380.2	1208	cca/ccCa																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40730910	40730910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	119	207	0	ENST00000373198.4:c.3625C>T	p.Arg1209Trp	p.R1209W	ENST00000373198	NM_133170.3	1209	Cgg/Tgg																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95570284	95570284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	59	191	0	ENST00000343455.3:c.3449C>A	p.Ser1150Tyr	p.S1150Y	ENST00000343455	NM_177438.2	1150	tCt/tAt																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3781320	3781320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	69	383	1	ENST00000262367.5:c.5045G>A	p.Arg1682His	p.R1682H	ENST00000262367	NM_004380.2	1682	cGc/cAc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40743927	40743927	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	57	216	0	ENST00000373198.4:c.3068A>G	p.Asp1023Gly	p.D1023G	ENST00000373198	NM_133170.3	1023	gAc/gGc																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0005483-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			381	264	319	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880984	37880985	+	inframe_insertion	In_Frame_Ins	INS	-	-	TACGTGATGGCT			P-0005483-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	703	420	0	ENST00000269571.5:c.2314_2325dupTACGTGATGGCT	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/TACGTGATGGCT																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005483-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			413	246	336	0	ENST00000304494.5:c.130_131insC	p.Tyr44SerfsTer76	p.Y44Sfs*76	ENST00000304494	NM_000077.4	44	tac/tCac																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974696	21974697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0005483-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			413	246	336	0	ENST00000304494.5:c.130_131insC	p.Tyr44SerfsTer76	p.Y44Sfs*76	ENST00000304494	NM_000077.4	44	tac/tCac																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023962	27023962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005483-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			140	12	46	0	ENST00000324856.7:c.1068G>T	p.Arg356Ser	p.R356S	ENST00000324856	NM_006015.4	356	agG/agT																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177640	112177640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005483-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			487	98	267	0	ENST00000257430.4:c.6349C>T	p.Gln2117Ter	p.Q2117*	ENST00000257430	NM_000038.5	2117	Caa/Taa																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180043414	180043414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005483-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			809	72	410	0	ENST00000261937.6:c.3172C>T	p.Leu1058Phe	p.L1058F	ENST00000261937	NM_182925.4	1058	Ctt/Ttt																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108213976	108213976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005483-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			732	96	316	0	ENST00000278616.4:c.8296G>A	p.Val2766Ile	p.V2766I	ENST00000278616	NM_000051.3	2766	Gtt/Att																																												NEWRECORD																																		
CHEK1	0	MSKCC	GRCh37	11	125525174	125525174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005483-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			844	113	376	1	ENST00000428830.2:c.1390G>T	p.Asp464Tyr	p.D464Y	ENST00000428830	NM_001114121.2	464	Gat/Tat																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624297	89624297	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	72	439	0	ENST00000371953.3:c.71A>G	p.Asp24Gly	p.D24G	ENST00000371953	NM_000314.4	24	gAc/gGc																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53246390	53246390	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	100	592	1	ENST00000375401.3:c.592C>T	p.Arg198Ter	p.R198*	ENST00000375401	NM_004187.3	198	Cga/Tga																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52668619	52668619	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0008061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	60	818	0	ENST00000394830.3:c.1300C>T	p.Arg434Ter	p.R434*	ENST00000394830	NM_018313.4	434	Cga/Tga																																												NEWRECORD																																		
PAK1	0	MSKCC	GRCh37	11	77051698	77051698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	41	856	0	ENST00000356341.3:c.1109G>T	p.Cys370Phe	p.C370F	ENST00000356341	NM_002576.4	370	tGc/tTc																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30293200	30293200	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	23	810	0	ENST00000322652.5:c.490T>A	p.Phe164Ile	p.F164I	ENST00000322652	NM_015355.2	164	Ttc/Atc																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2226419	2226419	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	88	703	0	ENST00000398665.3:c.3899T>C	p.Leu1300Pro	p.L1300P	ENST00000398665	NM_032482.2	1300	cTg/cCg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023174	27023174	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	22	209	0	ENST00000324856.7:c.282del	p.Gly95AlafsTer6	p.G95Afs*6	ENST00000324856	NM_006015.4	94	Ccc/cc																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10191478	10191479	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	73	601	0	ENST00000256474.2:c.472dup	p.Leu158ProfsTer16	p.L158Pfs*16	ENST00000256474	NM_000551.3	157	-/C																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164778	47164778	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	66	630	0	ENST00000409792.3:c.1348del	p.Tyr450ThrfsTer34	p.Y450Tfs*34	ENST00000409792	NM_014159.6	450	Tac/ac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187627721	187627721	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			784	286	244	0	ENST00000441802.2:c.3261G>C	p.Glu1087Asp	p.E1087D	ENST00000441802	NM_005245.3	1087	gaG/gaC																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	92	110	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509421	106509421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			930	747	229	1	ENST00000359195.3:c.1415G>A	p.Arg472His	p.R472H	ENST00000359195	NM_002649.2	472	cGt/cAt																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5243923	5243923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	116	152	0	ENST00000357368.4:c.1559C>T	p.Thr520Met	p.T520M	ENST00000357368	NM_002850.3	520	aCg/aTg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40713350	40713350	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			782	88	144	0	ENST00000373198.4:c.4165A>T	p.Arg1389Trp	p.R1389W	ENST00000373198	NM_133170.3	1389	Agg/Tgg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	224	112	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577114	7577115	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000687-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	679	247	0	ENST00000269305.4:c.823dupT	p.Cys275LeufsTer31	p.C275Lfs*31	ENST00000269305	NM_001126112.2	275	tgt/tTgt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	176	460	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	16075122	16075122	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	113	345	0	ENST00000268712.3:c.430A>T	p.Lys144Ter	p.K144*	ENST00000268712	NM_006311.3	144	Aag/Tag																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68842340	68842341	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	153	608	0	ENST00000261769.5:c.403dup	p.Ile135AsnfsTer33	p.I135Nfs*33	ENST00000261769	NM_004360.3	134	gga/ggAa																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0011529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	163	397	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913233	32913233	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	384	1139	1	ENST00000380152.3:c.4741G>T	p.Glu1581Ter	p.E1581*	ENST00000380152		1581	Gag/Tag																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102869478	102869478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	158	408	1	ENST00000307046.8:c.163G>A	p.Gly55Arg	p.G55R	ENST00000307046	NM_001111285.1	55	Ggg/Agg																																												NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128753151	128753151	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	180	443	0	ENST00000377970.2:c.1312C>G	p.Arg438Gly	p.R438G	ENST00000377970	NM_002467.4	438	Cga/Gga																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28608046	28608046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	271	846	0	ENST00000241453.7:c.1920G>T	p.Gln640His	p.Q640H	ENST00000241453	NM_004119.2	640	caG/caT																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46243523	46243545	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGTTCCTGATGTATCTCCTGC	TCTGTTCCTGATGTATCTCCTGC	-			P-0011529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	53	622	0	ENST00000334344.6:c.1878_1900del	p.Val627PhefsTer72	p.V627Ffs*72	ENST00000334344	NM_152641.2	626	TCTGTTCCTGATGTATCTCCTGCt/t																																												NEWRECORD																																		
GNA11	0	MSKCC	GRCh37	19	3118934	3118934	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	287	376	1	ENST00000078429.4:c.623del	p.Gly208AlafsTer16	p.G208Afs*16	ENST00000078429	NM_002067.2	206	gtG/gt																																												NEWRECORD																																		
AKT3	0	MSKCC	GRCh37	1	243736302	243736302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	303	395	0	ENST00000263826.5:c.745C>A	p.Arg249Ser	p.R249S	ENST00000263826	NM_005465.4	249	Cgt/Agt																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	17	336	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt																																												NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	194	315	1	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	932	435	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	366	363	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10600393	10600393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	685	481	1	ENST00000171111.5:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000171111	NM_203500.1	488	Gag/Aag																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10247836	10247836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	336	498	3	ENST00000340748.4:c.4366C>T	p.Arg1456Trp	p.R1456W	ENST00000340748		1456	Cgg/Tgg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16235913	16235913	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	192	448	0	ENST00000375759.3:c.979G>T	p.Glu327Ter	p.E327*	ENST00000375759	NM_015001.2	327	Gaa/Taa																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193104711	193104711	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	366	381	0	ENST00000367435.3:c.415C>T	p.Arg139Ter	p.R139*	ENST00000367435	NM_024529.4	139	Cga/Tga																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111881543	111881543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	302	364	0	ENST00000393256.3:c.221C>T	p.Ala74Val	p.A74V	ENST00000393256	NM_006538.4	74	gCt/gTt																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49723051	49723051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	29	133	0	ENST00000449682.2:c.1365C>A	p.Asp455Glu	p.D455E	ENST00000449682	NM_020998.3	455	gaC/gaA																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55589818	55589818	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	284	443	0	ENST00000288135.5:c.1300C>A	p.Pro434Thr	p.P434T	ENST00000288135	NM_000222.2	434	Cca/Aca																																												NEWRECORD																																		
PIM1	0	MSKCC	GRCh37	6	37138779	37138779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	167	327	0	ENST00000373509.5:c.212A>G	p.Lys71Arg	p.K71R	ENST00000373509	NM_002648.3	71	aAg/aGg																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106552735	106552735	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	329	424	0	ENST00000369096.4:c.700G>T	p.Glu234Ter	p.E234*	ENST00000369096	NM_001198.3	234	Gag/Tag																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2968253	2968253	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1298	247	455	0	ENST00000396946.4:c.1733A>G	p.Lys578Arg	p.K578R	ENST00000396946	NM_032415.4	578	aAg/aGg																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81372746	81372746	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	305	328	1	ENST00000222390.5:c.788C>A	p.Pro263His	p.P263H	ENST00000222390	NM_000601.4	263	cCc/cAc																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140434413	140434413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	371	409	0	ENST00000288602.6:c.2285C>T	p.Ala762Val	p.A762V	ENST00000288602	NM_004333.4	762	gCg/gTg																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110249861	110249861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	120	180	0	ENST00000374672.4:c.814C>T	p.Arg272Cys	p.R272C	ENST00000374672	NM_004235.4	272	Cgc/Tgc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333191	70333191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	157	399	0	ENST00000373644.4:c.1096G>A	p.Gly366Arg	p.G366R	ENST00000373644	NM_030625.2	366	Gga/Aga																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18658226	18658226	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	512	331	0	ENST00000266497.5:c.3031G>T	p.Ala1011Ser	p.A1011S	ENST00000266497		1011	Gcc/Tcc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46230438	46230438	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	694	338	0	ENST00000334344.6:c.772G>T	p.Glu258Ter	p.E258*	ENST00000334344	NM_152641.2	258	Gaa/Taa																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102811613	102811613	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	521	366	0	ENST00000307046.8:c.571G>T	p.Gly191Cys	p.G191C	ENST00000307046	NM_001111285.1	191	Ggc/Tgc																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102813333	102813333	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	857	367	1	ENST00000307046.8:c.356G>T	p.Arg119Leu	p.R119L	ENST00000307046	NM_001111285.1	119	cGc/cTc																																												NEWRECORD																																		
CD276	0	MSKCC	GRCh37	15	73991982	73991982	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	311	468	0	ENST00000318443.5:c.2T>C	p.Met1?	p.M1?	ENST00000318443	NM_001024736.1	1	aTg/aCg																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	347931	347931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	568	482	0	ENST00000262320.3:c.1575C>G	p.Asp525Glu	p.D525E	ENST00000262320	NM_003502.3	525	gaC/gaG																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2222308	2222308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	66	472	0	ENST00000326181.6:c.592G>A	p.Gly198Arg	p.G198R	ENST00000326181	NM_032271.2	198	Ggg/Agg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3778854	3778854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	240	384	0	ENST00000262367.5:c.6194G>A	p.Ser2065Asn	p.S2065N	ENST00000262367	NM_004380.2	2065	aGc/aAc																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63530172	63530172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1317	486	438	0	ENST00000307078.5:c.2263G>A	p.Gly755Ser	p.G755S	ENST00000307078	NM_004655.3	755	Ggt/Agt																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1619834	1619834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	589	523	1	ENST00000344749.5:c.1112G>A	p.Arg371Gln	p.R371Q	ENST00000344749	NM_001136139.2	371	cGa/cAa																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7125497	7125497	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	60	439	0	ENST00000302850.5:c.3055T>G	p.Ser1019Ala	p.S1019A	ENST00000302850	NM_000208.2	1019	Tct/Gct																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18266769	18266769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	243	330	0	ENST00000222254.8:c.80C>T	p.Pro27Leu	p.P27L	ENST00000222254	NM_005027.3	27	cCc/cTc																																												NEWRECORD																																		
CCNE1	0	MSKCC	GRCh37	19	30308117	30308117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	575	393	0	ENST00000262643.3:c.254G>T	p.Arg85Leu	p.R85L	ENST00000262643	NM_001238.2	85	cGg/cTg																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9523309	9523309	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	310	385	0	ENST00000353224.5:c.1928A>T	p.Tyr643Phe	p.Y643F	ENST00000353224	NM_177990.2	643	tAc/tTc																																												NEWRECORD																																		
TMPRSS2	0	MSKCC	GRCh37	21	42845267	42845267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	247	349	0	ENST00000398585.3:c.995C>T	p.Ala332Val	p.A332V	ENST00000398585	NM_001135099.1	332	gCc/gTc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44929167	44929167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	319	254	1	ENST00000377967.4:c.2267C>T	p.Ala756Val	p.A756V	ENST00000377967	NM_021140.2	756	gCa/gTa																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70356792	70356792	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	369	295	0	ENST00000374080.3:c.5464C>A	p.His1822Asn	p.H1822N	ENST00000374080		1822	Cac/Aac																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16263730	16263768	+	inframe_deletion	In_Frame_Del	DEL	CCACCCTGCCCGCCCTCCCAGCTCGGTCAGCCCGGCCAG	CCACCCTGCCCGCCCTCCCAGCTCGGTCAGCCCGGCCAG	-			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	218	269	0	ENST00000375759.3:c.10104_10142del	p.Cys3369_Pro3381del	p.C3369_P3381del	ENST00000375759	NM_015001.2	3367	CCACCCTGCCCGCCCTCCCAGCTCGGTCAGCCCGGCCAG/-																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73352417	73352418	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	177	343	0	ENST00000377767.4:c.487dup	p.Met163AsnfsTer15	p.M163Nfs*15	ENST00000377767	NM_014953.3	163	atg/aAtg																																												NEWRECORD																																		
NFKBIA	0	MSKCC	GRCh37	14	35872461	35872461	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	349	504	1	ENST00000216797.5:c.442del	p.Leu148TyrfsTer16	p.L148Yfs*16	ENST00000216797	NM_020529.2	148	Cta/ta																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176179	112176182	+	frameshift_variant	Frame_Shift_Del	DEL	GTTA	GTTA	-			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	87	411	0	ENST00000257430.4:c.4891_4894del	p.Ser1631LeufsTer18	p.S1631Lfs*18	ENST00000257430	NM_000038.5	1630	GTTAgt/gt																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86645146	86645149	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-			P-0005080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	256	286	0	ENST00000274376.6:c.1220_1223del	p.Asn407SerfsTer3	p.N407Sfs*3	ENST00000274376	NM_002890.2	406	aaCAAT/aa																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	126	273	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28624284	28624284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	98	432	0	ENST00000241453.7:c.690G>T	p.Arg230Ser	p.R230S	ENST00000241453	NM_004119.2	230	agG/agT																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40474494	40474494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	147	426	0	ENST00000264657.5:c.1907C>T	p.Ser636Phe	p.S636F	ENST00000264657	NM_139276.2	636	tCc/tTc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11143983	11143983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	139	270	1	ENST00000344626.4:c.3564C>A	p.Asp1188Glu	p.D1188E	ENST00000344626	NM_003072.3	1188	gaC/gaA																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11130278	11130279	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	102	325	0	ENST00000344626.4:c.2518dup	p.Ala840GlyfsTer105	p.A840Gfs*105	ENST00000344626	NM_003072.3	839	-/G																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577497	64577497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002244-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	323	202	0	ENST00000337652.1:c.85C>T	p.Arg29Ter	p.R29*	ENST00000337652	NM_130803.2	29	Cga/Tga																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2226330	2226330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002244-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	605	300	1	ENST00000326181.6:c.1943C>T	p.Ala648Val	p.A648V	ENST00000326181	NM_032271.2	648	gCg/gTg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15296182	15296182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002244-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	296	239	0	ENST00000263388.2:c.2182C>T	p.Arg728Cys	p.R728C	ENST00000263388	NM_000435.2	728	Cgc/Tgc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115725	8115728	+	frameshift_variant	Frame_Shift_Del	DEL	GAAG	GAAG	-			P-0002244-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	439	346	0	ENST00000346208.3:c.1076_1079delAAGG	p.Glu359AlafsTer44	p.E359Afs*44	ENST00000346208		357	aaGAAG/aa																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115888	8115889	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0002244-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	365	323	0	ENST00000346208.3:c.1236dupC	p.Ser413GlnfsTer94	p.S413Qfs*94	ENST00000346208		412	tcc/tCcc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	152012317	152012317	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	224	593	0	ENST00000262189.6:c.496C>T	p.Gln166Ter	p.Q166*	ENST00000262189	NM_170606.2	166	Caa/Taa																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41568563	41568563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	143	385	0	ENST00000263253.7:c.4513G>A	p.Glu1505Lys	p.E1505K	ENST00000263253	NM_001429.3	1505	Gag/Aag																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142261554	142261555	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0000768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	161	473	0	ENST00000350721.4:c.3402dupT	p.Asn1135Ter	p.N1135*	ENST00000350721	NM_001184.3	1134	-/T																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591135	67591151	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GAGAGACCAATACTTGA	GAGAGACCAATACTTGA	-			P-0000768-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	73	195	0	ENST00000274335.5:c.1728_1744del	p.Arg577ValfsTer19	p.R577Vfs*19	ENST00000274335		576	acGAGAGACCAATACTTGAtg/actg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	95	408	1	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119103384	119103384	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	60	341	0	ENST00000264033.4:c.422A>G	p.Tyr141Cys	p.Y141C	ENST00000264033	NM_005188.3	141	tAt/tGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578254	7578254	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	220	527	0	ENST00000269305.4:c.595G>T	p.Gly199Ter	p.G199*	ENST00000269305	NM_001126112.2	199	Gga/Tga																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938373	76938374	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0007891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	131	757	0	ENST00000373344.5:c.2373_2374dup	p.Thr792IlefsTer12	p.T792Ifs*12	ENST00000373344	NM_000489.3	792	act/aTAct																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11123722	11123722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	266	249	0	ENST00000344626.4:c.2372C>T	p.Ala791Val	p.A791V	ENST00000344626	NM_003072.3	791	gCg/gTg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156843595	156843595	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139875058		P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	92	386	2	ENST00000524377.1:c.1021G>A	p.Val341Met	p.V341M	ENST00000524377	NM_002529.3	341	Gtg/Atg																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55575658	55575658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	176	282	0	ENST00000288135.5:c.1184C>T	p.Ser395Phe	p.S395F	ENST00000288135	NM_000222.2	395	tCc/tTc																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149514489	149514489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	274	224	0	ENST00000261799.4:c.455C>A	p.Thr152Lys	p.T152K	ENST00000261799	NM_002609.3	152	aCa/aAa																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81554353	81554353	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	305	315	0	ENST00000298171.2:c.373C>G	p.Leu125Val	p.L125V	ENST00000298171	NM_000369.2	125	Ctc/Gtc																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105239429	105239429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	68	166	0	ENST00000349310.3:c.958G>T	p.Val320Leu	p.V320L	ENST00000349310	NM_001014432.1	320	Gtg/Ttg																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59876593	59876593	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	73	179	0	ENST00000259008.2:c.1208G>T	p.Arg403Leu	p.R403L	ENST00000259008	NM_032043.2	403	cGg/cTg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602907	10602907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	227	189	0	ENST00000171111.5:c.671C>T	p.Ser224Phe	p.S224F	ENST00000171111	NM_203500.1	224	tCc/tTc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579546	7579547	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	240	192	1	ENST00000269305.4:c.140_141insT	p.Asp48GlyfsTer4	p.D48Gfs*4	ENST00000269305	NM_001126112.2	47	ccg/ccTg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212989482	212989483	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	107	219	3	ENST00000342788.4:c.228_229delinsAA	p.Phe76_Leu77delinsLeuMet	p.F76_L77delinsLM	ENST00000342788	NM_005235.2	76	ttCCtg/ttAAtg																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17952518	17952519	+	missense_variant	Missense_Mutation	DNP	CT	CT	TG			P-0003586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	157	171	0	ENST00000458235.1:c.914_915delinsCA	p.Gln305Pro	p.Q305P	ENST00000458235	NM_000215.3	305	cAG/cCA																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68845699	68845700	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008304-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	232	514	2	ENST00000261769.5:c.946dup	p.Met316AsnfsTer5	p.M316Nfs*5	ENST00000261769	NM_004360.3	315	-/A																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	37	366	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828353	72828353	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	32	746	0	ENST00000268489.5:c.8228A>G	p.Tyr2743Cys	p.Y2743C	ENST00000268489	NM_006885.3	2743	tAc/tGc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101116	27101117	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	13	540	0	ENST00000324856.7:c.4403dup	p.Gly1469TrpfsTer22	p.G1469Wfs*22	ENST00000324856	NM_006015.4	1466	-/C																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	257	907	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36259295	36259296	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	116	269	0	ENST00000300305.3:c.195dup	p.Ala66CysfsTer72	p.A66Cfs*72	ENST00000300305		65	-/T																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52668619	52668619	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0012221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	85	505	0	ENST00000394830.3:c.1300C>T	p.Arg434Ter	p.R434*	ENST00000394830	NM_018313.4	434	Cga/Tga																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52437696	52437697	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0012221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	169	1013	2	ENST00000460680.1:c.1464dup	p.Ser489GlnfsTer3	p.S489Qfs*3	ENST00000460680	NM_004656.3	488	-/C																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436405	52436405	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	32	445	0	ENST00000460680.1:c.2089del	p.Ser697ProfsTer39	p.S697Pfs*39	ENST00000460680	NM_004656.3	697	Tcc/cc																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10183787	10183787	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	85	317	0	ENST00000256474.2:c.258delC	p.Val87TyrfsTer72	p.V87Yfs*72	ENST00000256474	NM_000551.3	86	Ccc/cc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913837	32913837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	35	743	2	ENST00000380152.3:c.5351delA	p.Asn1784ThrfsTer7	p.N1784Tfs*7	ENST00000380152		1782	cAa/ca																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	87	600	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	126	485	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508946	106508946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	64	354	1	ENST00000359195.3:c.940G>A	p.Ala314Thr	p.A314T	ENST00000359195	NM_002649.2	314	Gcc/Acc																																												NEWRECORD																																		
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	57	412	2	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16086010	16086010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	65	493	0	ENST00000281043.3:c.1186G>A	p.Asp396Asn	p.D396N	ENST00000281043	NM_005378.4	396	Gac/Aac																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66535307	66535307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	60	451	0	ENST00000273854.3:c.154A>G	p.Thr52Ala	p.T52A	ENST00000273854	NM_004439.5	52	Acc/Gcc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27056342	27056343	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	47	307	0	ENST00000324856.7:c.1338_1339delTT	p.Gln449AlafsTer173	p.Q449Afs*173	ENST00000324856	NM_006015.4	446	tcTTat/tcat																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16262576	16262576	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	56	318	0	ENST00000375759.3:c.9841C>A	p.Leu3281Met	p.L3281M	ENST00000375759	NM_015001.2	3281	Ctg/Atg																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16082625	16082625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	13	85	0	ENST00000281043.3:c.439G>A	p.Ala147Thr	p.A147T	ENST00000281043	NM_005378.4	147	Gcc/Acc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436886	52436886	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	66	411	0	ENST00000460680.1:c.1892A>T	p.Glu631Val	p.E631V	ENST00000460680	NM_004656.3	631	gAg/gTg																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106155653	106155653	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	83	411	0	ENST00000380013.4:c.554A>G	p.Gln185Arg	p.Q185R	ENST00000380013	NM_001127208.2	185	cAg/cGg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170666	112170666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	79	519	0	ENST00000257430.4:c.1762G>A	p.Val588Ile	p.V588I	ENST00000257430	NM_000038.5	588	Gta/Ata																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145738993	145738993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	48	444	1	ENST00000428558.2:c.2162G>A	p.Arg721Gln	p.R721Q	ENST00000428558	NM_004260.3	721	cGa/cAa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	67	294	0	ENST00000371953.3:c.253+1G>T		p.X85_splice	ENST00000371953	NM_000314.4	85																																													NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1039231	1039231	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144832155		P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	84	511	0	ENST00000358495.3:c.266C>T	p.Thr89Met	p.T89M	ENST00000358495	NM_134424.2	89	aCg/aTg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49427513	49427513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	166	590	0	ENST00000301067.7:c.10975C>T	p.Pro3659Ser	p.P3659S	ENST00000301067	NM_003482.3	3659	Cct/Tct																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81558873	81558873	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	60	458	0	ENST00000298171.2:c.468-2A>G		p.X156_splice	ENST00000298171	NM_000369.2	156																																													NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67670754	67670754	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	67	425	0	ENST00000264010.4:c.1999C>T	p.Pro667Ser	p.P667S	ENST00000264010	NM_006565.3	667	Cca/Tca																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1226588	1226588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	78	503	0	ENST00000326873.7:c.1244G>A	p.Arg415His	p.R415H	ENST00000326873	NM_000455.4	415	cGc/cAc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44969331	44969331	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	80	553	0	ENST00000377967.4:c.4017delT	p.Phe1339LeufsTer17	p.F1339Lfs*17	ENST00000377967	NM_021140.2	1338	gTt/gt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106561	27106562	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	67	539	1	ENST00000324856.7:c.6176dupA	p.Asn2059LysfsTer40	p.N2059Kfs*40	ENST00000324856	NM_006015.4	2058	gaa/gAaa																																												NEWRECORD																																		
CCND1	0	MSKCC	GRCh37	11	69466026	69466028	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	89	562	0	ENST00000227507.2:c.866_868delACG	p.Asp289del	p.D289del	ENST00000227507	NM_053056.2	288	acCGAc/acc																																												NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110435128	110435129	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs772322568		P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	51	293	0	ENST00000375856.3:c.3272dup	p.Lys1092GlufsTer233	p.K1092Efs*233	ENST00000375856	NM_003749.2	1091	ccg/ccCg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692981	89692982	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GG			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	75	351	0	ENST00000371953.3:c.468_469dupGG	p.Glu157GlyfsTer3	p.E157Gfs*3	ENST00000371953	NM_000314.4	155	-/GG																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57857549	57857549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	206	593	0	ENST00000228682.2:c.79delG	p.Ala27ProfsTer51	p.A27Pfs*51	ENST00000228682	NM_005269.2	25	caG/ca																																												NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	86	547	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37649051	37649051	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	101	587	0	ENST00000447079.4:c.2160delG	p.Lys721AsnfsTer32	p.K721Nfs*32	ENST00000447079	NM_015083.1	719	tGg/tg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157100577	157100577	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	69	417	0	ENST00000346085.5:c.1518delC	p.Gly507AspfsTer16	p.G507Dfs*16	ENST00000346085	NM_020732.3	505	aCc/ac																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27107138	27107138	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	62	324	0	ENST00000324856.7:c.6749delA	p.Glu2250GlyfsTer17	p.E2250Gfs*17	ENST00000324856	NM_006015.4	2250	gAg/gg																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111885145	111885145	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	83	615	1	ENST00000341259.2:c.1038delG	p.Leu347CysfsTer26	p.L347Cfs*26	ENST00000341259	NM_005475.2	345	Ggg/gg																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25505418	25505418	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	56	442	0	ENST00000264709.3:c.340delG	p.Ala114ProfsTer48	p.A114Pfs*48	ENST00000264709	NM_175629.2	114	Gcc/cc																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	34	392	0	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																												NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099579	157099579	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	16	97	0	ENST00000346085.5:c.521del	p.Pro174ArgfsTer6	p.P174Rfs*6	ENST00000346085	NM_020732.3	172	gaC/ga																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0003812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	53	404	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579584	7579585	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	37	215	0	ENST00000269305.4:c.102dupC	p.Pro36AlafsTer7	p.P36Afs*7	ENST00000269305	NM_001126112.2	34	-/C																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	52	303	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																												NEWRECORD																																		
HIST3H3	0	MSKCC	GRCh37	1	228612980	228612980	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	23	257	0	ENST00000366696.1:c.47C>T	p.Ala16Val	p.A16V	ENST00000366696	NM_003493.2	16	gCg/gTg																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49935535	49935535	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	30	418	0	ENST00000296474.3:c.1829C>A	p.Thr610Asn	p.T610N	ENST00000296474	NM_002447.2	610	aCt/aAt																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68844193	68844193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	41	303	2	ENST00000261769.5:c.781G>A	p.Glu261Lys	p.E261K	ENST00000261769	NM_004360.3	261	Gaa/Aaa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29665732	29665732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	46	236	0	ENST00000358273.4:c.6830G>A	p.Ser2277Asn	p.S2277N	ENST00000358273	NM_001042492.2	2277	aGt/aAt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151845959	151845959	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	37	298	0	ENST00000262189.6:c.13053delA	p.Lys4351AsnfsTer5	p.K4351Nfs*5	ENST00000262189	NM_170606.2	4351	aaA/aa																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186506924	186506924	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	56	369	0	ENST00000323963.5:c.1094del	p.Gly365ValfsTer10	p.G365Vfs*10	ENST00000323963		364	Ggg/gg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156851303	156851303	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	54	721	0	ENST00000524377.1:c.2260C>A	p.Pro754Thr	p.P754T	ENST00000524377	NM_002529.3	754	Cca/Aca																																												NEWRECORD																																		
GSK3B	0	MSKCC	GRCh37	3	119666135	119666135	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	67	544	0	ENST00000316626.5:c.346T>G	p.Phe116Val	p.F116V	ENST00000316626		116	Ttc/Gtc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187532930	187532930	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	50	352	0	ENST00000441802.2:c.9464-1G>T		p.X3155_splice	ENST00000441802	NM_005245.3	3155																																													NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	80	835	0	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108121715	108121715	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	52	682	0	ENST00000278616.4:c.1523T>G	p.Leu508Arg	p.L508R	ENST00000278616	NM_000051.3	508	cTt/cGt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25380254	25380254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	58	652	0	ENST00000256078.4:c.204G>C	p.Arg68Ser	p.R68S	ENST00000256078	NM_033360.2	68	agG/agC																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81929507	81929507	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	340	888	0	ENST00000359376.3:c.1168A>G	p.Lys390Glu	p.K390E	ENST00000359376	NM_002661.3	390	Aaa/Gaa																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5214465	5214465	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	53	754	0	ENST00000357368.4:c.4521C>G	p.Asn1507Lys	p.N1507K	ENST00000357368	NM_002850.3	1507	aaC/aaG																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175273	112175501	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCACCCTAGAACCAAATCCAGCAGACTGCAGGGTTCTAGTTTATCTTCAGAATCAGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCT	CAGCACCCTAGAACCAAATCCAGCAGACTGCAGGGTTCTAGTTTATCTTCAGAATCAGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCT	-			P-0004886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	107	522	0	ENST00000257430.4:c.3983_4211del	p.Gln1328ProfsTer11	p.Q1328Pfs*11	ENST00000257430	NM_000038.5	1328	CAGCACCCTAGAACCAAATCCAGCAGACTGCAGGGTTCTAGTTTATCTTCAGAATCAGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACACCCAAAAGTCCACCTGAACACTATGTTCAGGAGACCCCACTCATGTTTAGCAGATGTACTTCTGTCAGTTCACTTGATAGTTTTGAGAGTCGTTCGATTGCCAGCTcc/cc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577028	7577029	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GCTCCCTG			P-0004886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	129	521	0	ENST00000269305.4:c.902_909dup	p.Thr304GlnfsTer44	p.T304Qfs*44	ENST00000269305	NM_001126112.2	303	-/CAGGGAGC																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87570416	87570416	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	83	727	0	ENST00000277120.3:c.2156del	p.Ser719ThrfsTer60	p.S719Tfs*60	ENST00000277120		719	aGc/ac																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106545645	106545646	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0004886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	38	766	0	ENST00000359195.3:c.3122_3123delinsTT	p.Gln1041Leu	p.Q1041L	ENST00000359195	NM_002649.2	1041	cAG/cTT																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0003118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	334	284	0	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56168491	56168492	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0003118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	125	284	0	ENST00000399503.3:c.1450_1451delGA	p.Glu484ThrfsTer8	p.E484Tfs*8	ENST00000399503	NM_005921.1	483	AGa/a																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	32	285	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0003118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	328	356	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145739033	145739033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	59	231	0	ENST00000428558.2:c.2122A>G	p.Asn708Asp	p.N708D	ENST00000428558	NM_004260.3	708	Aac/Gac																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8521541	8521541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	55	217	0	ENST00000356435.5:c.697C>T	p.Arg233Cys	p.R233C	ENST00000356435		233	Cgt/Tgt																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061465	38061465	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	293	227	0	ENST00000250448.2:c.524A>G	p.Tyr175Cys	p.Y175C	ENST00000250448	NM_004496.3	175	tAc/tGc																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12871182	12871182	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	131	88	0	ENST00000228872.4:c.410delC	p.Pro137ArgfsTer8	p.P137Rfs*8	ENST00000228872	NM_004064.3	137	Ccg/cg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	124	430	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																												NEWRECORD																																		
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0007385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	135	400	2	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt																																												NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0007385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	232	591	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48603023	48603023	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	62	305	0	ENST00000342988.3:c.1324C>T	p.Gln442Ter	p.Q442*	ENST00000342988	NM_005359.5	442	Cag/Tag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101006	27101006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	143	478	0	ENST00000324856.7:c.4288C>T	p.Gln1430Ter	p.Q1430*	ENST00000324856	NM_006015.4	1430	Cag/Tag																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266502	41266502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	118	442	0	ENST00000349496.5:c.299C>T	p.Pro100Leu	p.P100L	ENST00000349496	NM_001904.3	100	cCt/cTt																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160606	56160606	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	114	427	1	ENST00000399503.3:c.880G>C	p.Asp294His	p.D294H	ENST00000399503	NM_005921.1	294	Gat/Cat																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3777933	3777933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	140	825	1	ENST00000262367.5:c.7115C>T	p.Ser2372Leu	p.S2372L	ENST00000262367	NM_004380.2	2372	tCg/tTg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860808	151860809	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0007385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	110	393	0	ENST00000262189.6:c.9853dup	p.Gln3285ProfsTer41	p.Q3285Pfs*41	ENST00000262189	NM_170606.2	3285	cag/cCag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	182	427	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	119	538	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713856	30713856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	133	419	0	ENST00000359013.4:c.1256G>T	p.Cys419Phe	p.C419F	ENST00000359013	NM_001024847.2	419	tGc/tTc																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73343037	73343037	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	111	284	0	ENST00000377767.4:c.1769A>T	p.Tyr590Phe	p.Y590F	ENST00000377767	NM_014953.3	590	tAt/tTt																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5240340	5240340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	84	447	1	ENST00000357368.4:c.1574C>T	p.Pro525Leu	p.P525L	ENST00000357368	NM_002850.3	525	cCg/cTg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44894225	44894226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	202	587	0	ENST00000377967.4:c.615dup	p.Glu206Ter	p.E206*	ENST00000377967	NM_021140.2	205	gct/gcTt																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	60	284	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	40	247	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117718106	117718106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	130	740	0	ENST00000368508.3:c.751T>C	p.Tyr251His	p.Y251H	ENST00000368508	NM_002944.2	251	Tac/Cac																																												NEWRECORD																																		
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	203	885	2	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	221	648	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	184	929	4	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt																																												NEWRECORD																																		
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1166	200	1214	6	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg																																												NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32954023	32954023	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	126	680	5	ENST00000380152.3:c.9097del	p.Thr3033LeufsTer29	p.T3033Lfs*29	ENST00000380152		3030	acA/ac																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27100176	27100176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	94	557	0	ENST00000324856.7:c.3977del	p.Pro1326ArgfsTer155	p.P1326Rfs*155	ENST00000324856	NM_006015.4	1324	taC/ta																																												NEWRECORD																																		
FLCN	201163	MSKCC	GRCh37	17	17119709	17119709	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80338683		P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	247	596	4	ENST00000285071.4:c.1285del	p.His429ThrfsTer39	p.H429Tfs*39	ENST00000285071	NM_144997.5	429	Cac/ac																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135785963	135785964	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	101	617	0	ENST00000298552.3:c.1257dupC	p.Arg420GlnfsTer22	p.R420Qfs*22	ENST00000298552	NM_001162426.1	419	-/C																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226567647	226567647	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	131	659	5	ENST00000366794.5:c.1519delA	p.Ser507AlafsTer17	p.S507Afs*17	ENST00000366794	NM_001618.3	507	Agc/gc																																												NEWRECORD																																		
CDH1	999	MSKCC	GRCh37	16	68835781	68835781	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	151	733	0	ENST00000261769.5:c.377del	p.Pro126ArgfsTer89	p.P126Rfs*89	ENST00000261769	NM_004360.3	124	cgC/cg																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27023560	27023560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1462224784		P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	103	857	3	ENST00000324856.7:c.671del	p.Pro224ArgfsTer8	p.P224Rfs*8	ENST00000324856	NM_006015.4	222	taC/ta																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149460476	149460476	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	114	756	0	ENST00000286301.3:c.161del	p.Pro54HisfsTer58	p.P54Hfs*58	ENST00000286301	NM_005211.3	54	cCa/ca																																												NEWRECORD																																		
MSH2	4436	MSKCC	GRCh37	2	47639588	47639588	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	129	490	1	ENST00000233146.2:c.687del	p.Ala230LeufsTer16	p.A230Lfs*16	ENST00000233146	NM_000251.2	227	agA/ag																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108213958	108213959	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	91	596	0	ENST00000278616.4:c.8283_8284del	p.Gln2762AlafsTer6	p.Q2762Afs*6	ENST00000278616	NM_000051.3	2760	CTc/c																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177864	112177864	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	51	477	0	ENST00000257430.4:c.6579del	p.Val2194PhefsTer5	p.V2194Ffs*5	ENST00000257430	NM_000038.5	2191	ggA/gg																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	401637	401637	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	61	602	0	ENST00000380956.4:c.963delC	p.Asp322ThrfsTer62	p.D322Tfs*62	ENST00000380956	NM_001195286.1	320	gCc/gc																																												NEWRECORD																																		
AXL	0	MSKCC	GRCh37	19	41765753	41765753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	117	521	2	ENST00000301178.4:c.2629G>A	p.Ala877Thr	p.A877T	ENST00000301178	NM_021913.4	877	Gct/Act																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101417	27101417	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	54	679	1	ENST00000324856.7:c.4703delC	p.Pro1568LeufsTer44	p.P1568Lfs*44	ENST00000324856	NM_006015.4	1567	Ccc/cc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431722	49431722	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	183	868	0	ENST00000301067.7:c.9417del	p.Lys3140ArgfsTer2	p.K3140Rfs*2	ENST00000301067	NM_003482.3	3139	ccC/cc																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65311293	65311293	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	123	903	1	ENST00000342505.4:c.2018del	p.Gly673ValfsTer30	p.G673Vfs*30	ENST00000342505	NM_002227.2	673	gGt/gt																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16255563	16255563	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	75	622	1	ENST00000375759.3:c.2828A>G	p.Lys943Arg	p.K943R	ENST00000375759	NM_015001.2	943	aAg/aGg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106390	27106390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	51	478	0	ENST00000324856.7:c.6001A>G	p.Met2001Val	p.M2001V	ENST00000324856	NM_006015.4	2001	Atg/Gtg																																												NEWRECORD																																		
JUN	0	MSKCC	GRCh37	1	59248633	59248633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	64	857	1	ENST00000371222.2:c.110G>T	p.Ser37Ile	p.S37I	ENST00000371222	NM_002228.3	37	aGc/aTc																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226564924	226564924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	124	803	0	ENST00000366794.5:c.1826A>G	p.Asp609Gly	p.D609G	ENST00000366794	NM_001618.3	609	gAt/gGt																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48010391	48010391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	83	618	0	ENST00000234420.5:c.19C>A	p.Leu7Met	p.L7M	ENST00000234420	NM_000179.2	7	Ctg/Atg																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99172172	99172172	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	106	798	0	ENST00000074304.5:c.1738G>T	p.Ala580Ser	p.A580S	ENST00000074304	NM_001134224.1	580	Gcc/Tcc																																												NEWRECORD																																		
PDCD1	0	MSKCC	GRCh37	2	242794898	242794898	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138016578		P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	90	778	1	ENST00000334409.5:c.311G>A	p.Arg104His	p.R104H	ENST00000334409	NM_005018.2	104	cGt/cAt																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30691910	30691910	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	35	484	0	ENST00000359013.4:c.487T>C	p.Cys163Arg	p.C163R	ENST00000359013	NM_001024847.2	163	Tgt/Cgt																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187557947	187557947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	134	728	2	ENST00000441802.2:c.3764C>A	p.Pro1255His	p.P1255H	ENST00000441802	NM_005245.3	1255	cCt/cAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112178714	112178714	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	111	749	0	ENST00000257430.4:c.7423A>G	p.Thr2475Ala	p.T2475A	ENST00000257430	NM_000038.5	2475	Act/Gct																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176662867	176662867	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	55	521	0	ENST00000439151.2:c.3842T>C	p.Leu1281Pro	p.L1281P	ENST00000439151	NM_022455.4	1281	cTt/cCt																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29910368	29910368	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	132	853	0	ENST00000376809.5:c.38T>G	p.Leu13Arg	p.L13R	ENST00000376809	NM_002116.7	13	cTc/cGc																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288785	33288785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	108	394	0	ENST00000374542.5:c.767G>A	p.Arg256His	p.R256H	ENST00000374542	NM_001141970.1	256	cGc/cAc																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138199898	138199898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	32	340	1	ENST00000237289.4:c.1316G>A	p.Arg439Gln	p.R439Q	ENST00000237289	NM_001270507.1	439	cGg/cAg																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145738633	145738633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	50	257	0	ENST00000428558.2:c.2431C>T	p.Pro811Ser	p.P811S	ENST00000428558	NM_004260.3	811	Cct/Tct																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93624598	93624598	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	149	717	0	ENST00000375746.1:c.689A>G	p.Glu230Gly	p.E230G	ENST00000375746	NM_001174167.1	230	gAg/gGg																																												NEWRECORD																																		
ABL1	25	MSKCC	GRCh37	9	133759832	133759832	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145494071		P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	102	417	0	ENST00000318560.5:c.2155G>A	p.Ala719Thr	p.A719T	ENST00000318560	NM_005157.4	719	Gcc/Acc																																												NEWRECORD																																		
IGF2	0	MSKCC	GRCh37	11	2154426	2154426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	143	917	0	ENST00000434045.2:c.502A>G	p.Lys168Glu	p.K168E	ENST00000434045	NM_001127598.1	168	Aag/Gag																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108196146	108196146	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	43	617	0	ENST00000278616.4:c.6682A>C	p.Thr2228Pro	p.T2228P	ENST00000278616	NM_000051.3	2228	Aca/Cca																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244815	46244815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	67	1050	1	ENST00000334344.6:c.2909C>A	p.Pro970Gln	p.P970Q	ENST00000334344	NM_152641.2	970	cCa/cAa																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45003794	45003794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	74	669	1	ENST00000558401.1:c.50G>A	p.Gly17Asp	p.G17D	ENST00000558401	NM_004048.2	17	gGc/gAc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858538	9858538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	46	849	1	ENST00000330684.3:c.2863A>G	p.Ile955Val	p.I955V	ENST00000330684	NM_001134407.1	955	Att/Gtt																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68849487	68849487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	148	881	0	ENST00000261769.5:c.1390G>A	p.Val464Ile	p.V464I	ENST00000261769	NM_004360.3	464	Gtc/Atc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68862207	68862207	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	95	505	0	ENST00000261769.5:c.2295G>T	p.Gln765His	p.Q765H	ENST00000261769	NM_004360.3	765	caG/caT																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81957133	81957133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	325	994	3	ENST00000359376.3:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000359376	NM_002661.3	784	cGa/cAa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15935665	15935665	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	121	592	0	ENST00000268712.3:c.7268A>C	p.Glu2423Ala	p.E2423A	ENST00000268712	NM_006311.3	2423	gAg/gCg																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17118585	17118585	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	70	718	0	ENST00000285071.4:c.1346T>C	p.Leu449Pro	p.L449P	ENST00000285071	NM_144997.5	449	cTc/cCc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5220129	5220129	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	58	445	0	ENST00000357368.4:c.3586C>A	p.Leu1196Met	p.L1196M	ENST00000357368	NM_002850.3	1196	Ctg/Atg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602847	10602847	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	94	706	0	ENST00000171111.5:c.731A>G	p.Glu244Gly	p.E244G	ENST00000171111	NM_203500.1	244	gAg/gGg																																												NEWRECORD																																		
CD79A	0	MSKCC	GRCh37	19	42384771	42384771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1312	77	1134	0	ENST00000221972.3:c.533C>T	p.Ala178Val	p.A178V	ENST00000221972	NM_021601.3	178	gCc/gTc																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50917041	50917041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	229	1144	2	ENST00000440232.2:c.2293G>A	p.Val765Met	p.V765M	ENST00000440232	NM_002691.3	765	Gtg/Atg																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31024687	31024687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	139	956	1	ENST00000375687.4:c.4172G>A	p.Ser1391Asn	p.S1391N	ENST00000375687	NM_015338.5	1391	aGt/aAt																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70354981	70354981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	172	1044	0	ENST00000374080.3:c.4903G>A	p.Val1635Ile	p.V1635I	ENST00000374080		1635	Gtt/Att																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123196990	123196990	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	57	829	0	ENST00000218089.9:c.1756A>G	p.Thr586Ala	p.T586A	ENST00000218089	NM_001042749.1	586	Act/Gct																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215645737	215645738	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	127	715	0	ENST00000260947.4:c.860_861del	p.Glu287ValfsTer5	p.E287Vfs*5	ENST00000260947	NM_000465.2	287	gAG/g																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112179036	112179036	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	46	495	0	ENST00000257430.4:c.7749del	p.Ala2584GlnfsTer9	p.A2584Qfs*9	ENST00000257430	NM_000038.5	2582	gAa/ga																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59926603	59926603	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	74	525	0	ENST00000259008.2:c.394del	p.Thr132ProfsTer25	p.T132Pfs*25	ENST00000259008	NM_032043.2	132	Acc/cc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30675433	30675433	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	137	709	0	ENST00000376406.3:c.2923del	p.Asp975ThrfsTer23	p.D975Tfs*23	ENST00000376406	NM_014641.2	975	Gac/ac																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138382756	138382756	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	51	654	2	ENST00000289153.2:c.2788del	p.Thr930LeufsTer62	p.T930Lfs*62	ENST00000289153	NM_006219.2	930	Act/ct																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52620679	52620679	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	64	451	0	ENST00000394830.3:c.3074del	p.Asn1025ThrfsTer109	p.N1025Tfs*109	ENST00000394830	NM_018313.4	1025	aAc/ac																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434982	49434983	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	77	419	0	ENST00000301067.7:c.6570dupC	p.Thr2191HisfsTer11	p.T2191Hfs*11	ENST00000301067	NM_003482.3	2190	-/C																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1619216	1619216	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	207	949	0	ENST00000344749.5:c.1344del	p.Glu449ArgfsTer37	p.E449Rfs*37	ENST00000344749	NM_001136139.2	448	ccC/cc																																												NEWRECORD																																		
GATA1	0	MSKCC	GRCh37	X	48649561	48649561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	197	1201	0	ENST00000376670.3:c.49del	p.Gln17SerfsTer120	p.Q17Sfs*120	ENST00000376670	NM_002049.3	15	ctC/ct																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10249243	10249243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	168	600	0	ENST00000340748.4:c.3939del	p.Ile1314SerfsTer28	p.I1314Sfs*28	ENST00000340748		1313	gcC/gc																																												NEWRECORD																																		
SH2D1A	0	MSKCC	GRCh37	X	123480586	123480587	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	35	564	0	ENST00000371139.4:c.97dup	p.Asp33GlyfsTer35	p.D33Gfs*35	ENST00000371139	NM_001114937.2	32	agg/aGgg																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29083899	29083900	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	32	209	0	ENST00000328354.6:c.1617_1618delTG	p.Ala540CysfsTer9	p.A540Cfs*9	ENST00000328354	NM_007194.3	539	tgTGct/tgct																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114925317	114925318	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	220	982	0	ENST00000543371.1:c.1402_1403del	p.Lys468ValfsTer8	p.K468Vfs*8	ENST00000543371	NM_001198531.1	465	agAAaa/agaa																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69233239	69233240	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0013227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	137	744	0	ENST00000462284.1:c.1111dup	p.Thr371AsnfsTer5	p.T371Nfs*5	ENST00000462284	NM_002392.5	368	-/A																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12641769	12641769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007531-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			919	105	475	0	ENST00000251849.4:c.872C>T	p.Ser291Leu	p.S291L	ENST00000251849	NM_002880.3	291	tCa/tTa																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145737092	145737092	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007531-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			706	204	443	0	ENST00000428558.2:c.3474G>T	p.Arg1158Ser	p.R1158S	ENST00000428558	NM_004260.3	1158	agG/agT																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123260349	123260349	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007531-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			986	124	532	0	ENST00000358487.5:c.1552A>T	p.Met518Leu	p.M518L	ENST00000358487	NM_000141.4	518	Atg/Ttg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133212567	133212567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007531-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			860	100	582	0	ENST00000320574.5:c.5722T>G	p.Ser1908Ala	p.S1908A	ENST00000320574	NM_006231.2	1908	Tct/Gct																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29560193	29560193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007531-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			608	77	381	0	ENST00000358273.4:c.3670G>T	p.Ala1224Ser	p.A1224S	ENST00000358273	NM_001042492.2	1224	Gcg/Tcg																																												NEWRECORD																																		
SH2D1A	0	MSKCC	GRCh37	X	123499658	123499658	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007531-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			975	154	787	0	ENST00000371139.4:c.185G>T	p.Gly62Val	p.G62V	ENST00000371139	NM_001114937.2	62	gGt/gTt																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95566125	95566126	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007531-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			500	53	298	0	ENST00000343455.3:c.4197dup	p.Asp1400ArgfsTer2	p.D1400Rfs*2	ENST00000343455	NM_177438.2	1399	-/A																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245609	46245612	+	frameshift_variant	Frame_Shift_Del	DEL	CCCC	CCCC	-			P-0007531-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			767	73	491	0	ENST00000334344.6:c.3704_3707delCCCC	p.Pro1235HisfsTer7	p.P1235Hfs*7	ENST00000334344	NM_152641.2	1235	CCCCca/ca																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2985587	2985587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007531-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			677	59	351	0	ENST00000396946.4:c.224G>A	p.Arg75Gln	p.R75Q	ENST00000396946	NM_032415.4	75	cGg/cAg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151879048	151879060	+	frameshift_variant	Frame_Shift_Del	DEL	GGTTTTGCATAGG	GGTTTTGCATAGG	-			P-0007531-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			715	85	504	0	ENST00000262189.6:c.5885_5897delCCTATGCAAAACC	p.Pro1962LeufsTer8	p.P1962Lfs*8	ENST00000262189	NM_170606.2	1962	cCCTATGCAAAACCt/ct																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27088681	27088682	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007531-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			982	60	602	1	ENST00000324856.7:c.2296dup	p.Gln766ProfsTer51	p.Q766Pfs*51	ENST00000324856	NM_006015.4	764	tcc/tCcc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32914484	32914491	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGTGTT	CAAGTGTT	AATATC			P-0007531-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1407	167	1126	0	ENST00000380152.3:c.5992_5999delCAAGTGTTinsAATATC	p.Gln1998AsnfsTer4	p.Q1998Nfs*4	ENST00000380152		1998	CAAGTGTTt/AATATCt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	10	252	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	121	379	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	303	438	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32170027	32170027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	255	516	1	ENST00000375023.3:c.3581C>T	p.Pro1194Leu	p.P1194L	ENST00000375023	NM_004557.3	1194	cCg/cTg																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30670619	30670619	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	223	492	0	ENST00000376406.3:c.5901A>C	p.Glu1967Asp	p.E1967D	ENST00000376406	NM_014641.2	1967	gaA/gaC																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175694	112175706	+	frameshift_variant	Frame_Shift_Del	DEL	AGCAAGCTGCAGT	AGCAAGCTGCAGT	-			P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	342	449	1	ENST00000257430.4:c.4404_4416del	p.Gln1469MetfsTer34	p.Q1469Mfs*34	ENST00000257430	NM_000038.5	1468	aAGCAAGCTGCAGTa/aa																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0004566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	503	537	17	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	73	229	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157527397	157527398	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	194	376	0	ENST00000346085.5:c.5127dup	p.Ala1710SerfsTer3	p.A1710Sfs*3	ENST00000346085	NM_020732.3	1708	caa/cAaa																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31384651	31384651	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	138	605	0	ENST00000328111.2:c.1359del	p.Leu454SerfsTer136	p.L454Sfs*136	ENST00000328111	NM_006892.3	451	gaG/ga																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70120479	70120480	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	102	436	0	ENST00000245479.2:c.1486dup	p.Gln496ProfsTer82	p.Q496Pfs*82	ENST00000245479	NM_000346.3	494	agc/agCc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398262	25398262	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	393	388	0	ENST00000256078.4:c.57G>C	p.Leu19Phe	p.L19F	ENST00000256078	NM_033360.2	19	ttG/ttC																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76919014	76919014	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	482	447	0	ENST00000373344.5:c.3977C>G	p.Ser1326Ter	p.S1326*	ENST00000373344	NM_000489.3	1326	tCa/tGa																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577305	64577307	+	frameshift_variant	Frame_Shift_Ins	INS	AGC	AGC	GCTT			P-0014036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	500	426	0	ENST00000337652.1:c.275_277delinsAAGC	p.Arg92GlnfsTer25	p.R92Qfs*25	ENST00000337652	NM_130803.2	92	cGCTtc/cAAGCtc																																												NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0008659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	212	385	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458194	120458194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	342	356	0	ENST00000256646.2:c.7151C>T	p.Pro2384Leu	p.P2384L	ENST00000256646	NM_024408.3	2384	cCc/cTc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808603	1808603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	434	607	0	ENST00000260795.2:c.2216C>T	p.Pro739Leu	p.P739L	ENST00000260795		739	cCc/cTc																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149450021	149450021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	194	254	0	ENST00000286301.3:c.1196G>A	p.Arg399Gln	p.R399Q	ENST00000286301	NM_005211.3	399	cGa/cAa																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36652107	36652107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	299	344	0	ENST00000244741.5:c.229T>A	p.Tyr77Asn	p.Y77N	ENST00000244741	NM_000389.4	77	Tac/Aac																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49437716	49437716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	462	624	0	ENST00000301067.7:c.5254A>G	p.Lys1752Glu	p.K1752E	ENST00000301067	NM_003482.3	1752	Aag/Gag																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48947540	48947540	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0008659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	253	304	1	ENST00000267163.4:c.1128-1G>C		p.X376_splice	ENST00000267163	NM_000321.2	376																																													NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	252	325	1	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41277874	41277875	+	inframe_insertion	In_Frame_Ins	INS	-	-	AGC			P-0008659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	217	439	0	ENST00000349496.5:c.1839_1841dup	p.Ala615dup	p.A615dup	ENST00000349496	NM_001904.3	615	gta/gtAGCa																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30000084	30000085	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	108	559	0	ENST00000338641.4:c.98dup	p.Met33IlefsTer16	p.M33Ifs*16	ENST00000338641	NM_000268.3	33	atg/aTtg																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713559	30713559	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000584-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			251	191	447	0	ENST00000359013.4:c.959C>G	p.Ser320Ter	p.S320*	ENST00000359013	NM_001024847.2	320	tCa/tGa																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110251308	110251308	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000584-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			293	203	639	0	ENST00000374672.4:c.29T>A	p.Met10Lys	p.M10K	ENST00000374672	NM_004235.4	10	aTg/aAg																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30321025	30321025	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0000584-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			203	146	446	0	ENST00000322652.5:c.1435G>T	p.Val479Phe	p.V479F	ENST00000322652	NM_015355.2	479	Gtt/Ttt																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115873	8115874	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0000584-T03-IM6									Unknown	SOMATIC				MSK-IMPACT			403	318	857	0	ENST00000346208.3:c.1220dupC	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tCcg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0004923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	114	252	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	169	437	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44941830	44941831	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	132	486	0	ENST00000377967.4:c.3160dupA	p.Arg1054LysfsTer5	p.R1054Kfs*5	ENST00000377967	NM_021140.2	1052	gaa/gAaa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332456	70332456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	106	424	0	ENST00000373644.4:c.361G>T	p.Val121Phe	p.V121F	ENST00000373644	NM_030625.2	121	Gtc/Ttc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29553478	29553478	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	436	488	4	ENST00000358273.4:c.2033delC	p.Pro678ArgfsTer10	p.P678Rfs*10	ENST00000358273	NM_001042492.2	676	aCc/ac																																												NEWRECORD																																		
STAT5B	6777	MSKCC	GRCh37	17	40370235	40370236	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs761761205		P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	433	567	3	ENST00000293328.3:c.1102dup	p.Gln368ProfsTer9	p.Q368Pfs*9	ENST00000293328	NM_012448.3	368	cag/cCag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576910	7576910	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	529	557	0	ENST00000269305.4:c.936delC	p.Ser313AlafsTer32	p.S313Afs*32	ENST00000269305	NM_001126112.2	312	acC/ac																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49434940	49434940	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	208	425	0	ENST00000301067.7:c.6613del	p.Ala2205ProfsTer59	p.A2205Pfs*59	ENST00000301067	NM_003482.3	2205	Gcc/cc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43597792	43597793	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CG	CG	AC			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			847	148	478	0	ENST00000355710.3:c.340_341delinsAC	p.Arg114Thr	p.R114T	ENST00000355710	NM_020975.4	114	CGc/ACc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108151824	108151824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200765255		P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	180	394	0	ENST00000278616.4:c.3505G>A	p.Glu1169Lys	p.E1169K	ENST00000278616	NM_000051.3	1169	Gaa/Aaa																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103510703	103510703	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	152	364	0	ENST00000355739.4:c.607G>T	p.Glu203Ter	p.E203*	ENST00000355739	NM_000123.3	203	Gaa/Taa																																												NEWRECORD																																		
NFKBIA	0	MSKCC	GRCh37	14	35871748	35871748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	230	387	2	ENST00000216797.5:c.758C>T	p.Pro253Leu	p.P253L	ENST00000216797	NM_020529.2	253	cCc/cTc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88678404	88678404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1120	225	645	1	ENST00000360948.2:c.1132C>A	p.Leu378Ile	p.L378I	ENST00000360948	NM_001012338.2	378	Ctc/Atc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88680792	88680792	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			779	189	450	1	ENST00000360948.2:c.465G>T	p.Leu155Phe	p.L155F	ENST00000360948	NM_001012338.2	155	ttG/ttT																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858026	9858026	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	151	426	0	ENST00000330684.3:c.3375G>C	p.Glu1125Asp	p.E1125D	ENST00000330684	NM_001134407.1	1125	gaG/gaC																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10273958	10273958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	285	676	1	ENST00000330684.3:c.311C>A	p.Thr104Lys	p.T104K	ENST00000330684	NM_001134407.1	104	aCg/aAg																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67650677	67650677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	213	474	0	ENST00000264010.4:c.982G>T	p.Asp328Tyr	p.D328Y	ENST00000264010	NM_006565.3	328	Gac/Tac																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72831582	72831582	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	264	599	0	ENST00000268489.5:c.4999A>G	p.Asn1667Asp	p.N1667D	ENST00000268489	NM_006885.3	1667	Aat/Gat																																												NEWRECORD																																		
YES1	0	MSKCC	GRCh37	18	732914	732914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			947	228	591	2	ENST00000314574.4:c.1343G>A	p.Arg448Gln	p.R448Q	ENST00000314574	NM_005433.3	448	cGg/cAg																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2210417	2210417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	257	489	0	ENST00000398665.3:c.1024C>T	p.Arg342Trp	p.R342W	ENST00000398665	NM_032482.2	342	Cgg/Tgg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11123682	11123682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	269	491	0	ENST00000344626.4:c.2332G>A	p.Ala778Thr	p.A778T	ENST00000344626	NM_003072.3	778	Gcc/Acc																																												NEWRECORD																																		
CALR	0	MSKCC	GRCh37	19	13054605	13054607	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	214	358	1	ENST00000316448.5:c.1142_1144delAGG	p.Glu381del	p.E381del	ENST00000316448	NM_004343.3	378	GAG/-																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26068368	26068369	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	141	364	0	ENST00000435504.4:c.121_122del	p.Glu41ArgfsTer26	p.E41Rfs*26	ENST00000435504		41	GAa/a																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48026911	48026912	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	117	259	0	ENST00000234420.5:c.1794dup	p.Gly599ArgfsTer8	p.G599Rfs*8	ENST00000234420	NM_000179.2	597	gaa/gAaa																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128028968	128028971	+	frameshift_variant	Frame_Shift_Del	DEL	CCAT	CCAT	AAA			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			895	211	506	1	ENST00000285398.2:c.1886_1889delinsTTT	p.His629LeufsTer12	p.H629Lfs*12	ENST00000285398	NM_000122.1	629	cATGGt/cTTTt																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190728500	190728500	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs139932286		P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	141	416	2	ENST00000441310.2:c.1888C>T	p.Arg630Ter	p.R630*	ENST00000441310	NM_000534.4	630	Cga/Tga																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225360560	225360561	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	73	171	0	ENST00000264414.4:c.1830dup	p.Tyr611IlefsTer4	p.Y611Ifs*4	ENST00000264414	NM_003590.4	610	-/A																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37038115	37038115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	101	195	0	ENST00000231790.2:c.122A>G	p.Asp41Gly	p.D41G	ENST00000231790	NM_000249.3	41	gAt/gGt																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134851724	134851724	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	256	390	0	ENST00000398015.3:c.1130T>A	p.Val377Glu	p.V377E	ENST00000398015	NM_004441.4	377	gTg/gAg																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55964328	55964328	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			603	155	401	0	ENST00000263923.4:c.2485T>G	p.Phe829Val	p.F829V	ENST00000263923	NM_002253.2	829	Ttc/Gtc																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	226092	226092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	185	414	1	ENST00000264932.6:c.551G>T	p.Gly184Val	p.G184V	ENST00000264932	NM_004168.2	184	gGg/gTg																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57753151	57753152	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	149	237	0	ENST00000274289.3:c.864_865del	p.Tyr289Ter	p.Y289*	ENST00000274289	NM_006622.3	288	acTTat/acat																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86670703	86670703	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	91	206	0	ENST00000274376.6:c.1984del	p.Thr662GlnfsTer16	p.T662Qfs*16	ENST00000274376	NM_002890.2	661	Aaa/aa																																												NEWRECORD																																		
HIST1H3G	0	MSKCC	GRCh37	6	26271243	26271243	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	174	353	0	ENST00000305910.3:c.370G>T	p.Asp124Tyr	p.D124Y	ENST00000305910	NM_003534.2	124	Gac/Tac																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117663622	117663622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	146	447	0	ENST00000368508.3:c.4610C>T	p.Ser1537Leu	p.S1537L	ENST00000368508	NM_002944.2	1537	tCa/tTa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106526608	106526608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	154	336	0	ENST00000359195.3:c.2901C>A	p.His967Gln	p.H967Q	ENST00000359195	NM_002649.2	967	caC/caA																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	69002822	69002822	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	177	230	0	ENST00000288368.4:c.2122G>T	p.Ala708Ser	p.A708S	ENST00000288368	NM_024870.2	708	Gct/Tct																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8517944	8517944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	135	317	1	ENST00000356435.5:c.1447G>T	p.Val483Leu	p.V483L	ENST00000356435		483	Gtg/Ttg																																												NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27185544	27185545	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1262	228	563	0	ENST00000380036.4:c.1250dupC	p.Asp418Ter	p.D418*	ENST00000380036	NM_000459.3	415	ctc/ctCc																																												NEWRECORD																																		
RXRA	0	MSKCC	GRCh37	9	137321073	137321073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	203	385	0	ENST00000481739.1:c.1030G>A	p.Ala344Thr	p.A344T	ENST00000481739	NM_002957.4	344	Gcc/Acc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76855036	76855036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	121	385	0	ENST00000373344.5:c.5800G>T	p.Gly1934Trp	p.G1934W	ENST00000373344	NM_000489.3	1934	Ggg/Tgg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76920253	76920253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	143	331	0	ENST00000373344.5:c.3824T>C	p.Met1275Thr	p.M1275T	ENST00000373344	NM_000489.3	1275	aTg/aCg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76952081	76952081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	121	385	1	ENST00000373344.5:c.354G>A	p.Met118Ile	p.M118I	ENST00000373344	NM_000489.3	118	atG/atA																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123224766	123224766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014454-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	181	514	0	ENST00000218089.9:c.3530G>A	p.Arg1177Lys	p.R1177K	ENST00000218089	NM_001042749.1	1177	aGa/aAa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	48	309	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	26	209	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	24	106	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	24	106	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	24	106	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39623707	39623707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	51	320	0	ENST00000262039.4:c.2114G>A	p.Arg705Lys	p.R705K	ENST00000262039	NM_002647.2	705	aGa/aAa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44950033	44950034	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009254-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	41	242	0	ENST00000377967.4:c.3803dup	p.Pro1269ThrfsTer22	p.P1269Tfs*22	ENST00000377967	NM_021140.2	1268	gta/gTta																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0004272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	41	153	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0004272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	253	381	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa																																												NEWRECORD																																		
IRS2	8660	MSKCC	GRCh37	13	110436296	110436297	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGG	rs34412495		P-0004272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	18	69	1	ENST00000375856.3:c.2102_2104dup	p.Ala701dup	p.A701dup	ENST00000375856	NM_003749.2	701	gtg/gCCGtg																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116418935	116418935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	93	321	0	ENST00000397752.3:c.3446G>T	p.Ser1149Ile	p.S1149I	ENST00000397752	NM_000245.2	1149	aGt/aTt																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80336403	80336403	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	55	195	0	ENST00000286548.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000286548	NM_002072.3	306	Cga/Tga																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135801074	135801074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	108	321	0	ENST00000298552.3:c.263C>T	p.Ser88Phe	p.S88F	ENST00000298552	NM_001162426.1	88	tCc/tTc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139413137	139413137	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	157	404	0	ENST00000277541.6:c.1005C>G	p.Asn335Lys	p.N335K	ENST00000277541	NM_017617.3	335	aaC/aaG																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49033967	49033967	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	224	304	0	ENST00000267163.4:c.2104C>A	p.Gln702Lys	p.Q702K	ENST00000267163	NM_000321.2	702	Caa/Aaa																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533770	63533770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	147	234	0	ENST00000307078.5:c.1384C>T	p.Pro462Ser	p.P462S	ENST00000307078	NM_004655.3	462	Ccc/Tcc																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	30956897	30956897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	285	482	0	ENST00000375687.4:c.223C>T	p.Pro75Ser	p.P75S	ENST00000375687	NM_015338.5	75	Cct/Tct																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578284	7578310	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGACCTAAGAGCAATCAGTGAGGAA	CCAGACCTAAGAGCAATCAGTGAGGAA	-			P-0004272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	211	371	0	ENST00000269305.4:c.560-21_565del		p.X187_splice	ENST00000269305	NM_001126112.2	187																																													NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	101	196	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180043377	180043377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	158	403	1	ENST00000261937.6:c.3209G>A	p.Arg1070His	p.R1070H	ENST00000261937	NM_182925.4	1070	cGc/cAc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	129	284	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27099098	27099098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	120	282	0	ENST00000324856.7:c.3514C>T	p.Gln1172Ter	p.Q1172*	ENST00000324856	NM_006015.4	1172	Cag/Tag																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149459858	149459858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	85	326	1	ENST00000286301.3:c.349G>A	p.Val117Met	p.V117M	ENST00000286301	NM_005211.3	117	Gtg/Atg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604784	48604790	+	frameshift_variant	Frame_Shift_Del	DEL	CTAGACG	CTAGACG	-			P-0011391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	130	279	0	ENST00000342988.3:c.1606_1612del	p.Leu536LysfsTer14	p.L536Kfs*14	ENST00000342988	NM_005359.5	536	CTAGACGaa/aa																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624279	89624280	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0011391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	85	198	0	ENST00000371953.3:c.55dupG	p.Asp19GlyfsTer25	p.D19Gfs*25	ENST00000371953	NM_000314.4	18	gag/gaGg																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31021665	31021665	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	39	131	0	ENST00000375687.4:c.1664T>G	p.Val555Gly	p.V555G	ENST00000375687	NM_015338.5	555	gTt/gGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574023	7574024	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0003365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	133	314	0	ENST00000269305.4:c.1003dup	p.Arg335ProfsTer2	p.R335Pfs*2	ENST00000269305	NM_001126112.2	335	cgt/cCgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	492	332	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	171	224	0	ENST00000371085.3:c.680A>T	p.Gln227Leu	p.Q227L	ENST00000371085	NM_000516.4	227	cAg/cTg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602446	10602446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	582	421	0	ENST00000171111.5:c.1132G>T	p.Gly378Cys	p.G378C	ENST00000171111	NM_203500.1	378	Ggc/Tgc																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1293689	1293689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	218	250	0	ENST00000310581.5:c.1312C>A	p.Pro438Thr	p.P438T	ENST00000310581	NM_198253.2	438	Ccc/Acc																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35861093	35861093	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	130	287	0	ENST00000303115.3:c.221+1G>T		p.X74_splice	ENST00000303115	NM_002185.3	74																																													NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876155	35876155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	247	399	0	ENST00000303115.3:c.947C>A	p.Ala316Asp	p.A316D	ENST00000303115	NM_002185.3	316	gCt/gAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112090652	112090652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	278	312	0	ENST00000257430.4:c.65A>G	p.Asn22Ser	p.N22S	ENST00000257430	NM_000038.5	22	aAt/aGt																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131923356	131923356	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	192	216	0	ENST00000265335.6:c.859A>G	p.Ser287Gly	p.S287G	ENST00000265335		287	Agt/Ggt																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128845624	128845624	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	456	264	0	ENST00000249373.3:c.920+1G>T		p.X307_splice	ENST00000249373	NM_005631.4	307																																													NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151933011	151933011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	229	104	0	ENST00000262189.6:c.2660G>T	p.Gly887Val	p.G887V	ENST00000262189	NM_170606.2	887	gGg/gTg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8375976	8375976	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	332	437	1	ENST00000356435.5:c.4621T>A	p.Cys1541Ser	p.C1541S	ENST00000356435		1541	Tgt/Agt																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100912675	100912675	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	601	450	0	ENST00000325455.5:c.2646+1G>A		p.X882_splice	ENST00000325455	NM_001202474.3	882																																													NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100912834	100912834	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	634	412	0	ENST00000325455.5:c.2489-1G>A		p.X830_splice	ENST00000325455	NM_001202474.3	830																																													NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108141808	108141808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	601	335	0	ENST00000278616.4:c.2856G>T	p.Lys952Asn	p.K952N	ENST00000278616	NM_000051.3	952	aaG/aaT																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49428063	49428063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	308	207	0	ENST00000301067.7:c.10527G>T	p.Gln3509His	p.Q3509H	ENST00000301067	NM_003482.3	3509	caG/caT																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49440131	49440131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	650	399	0	ENST00000301067.7:c.4495G>T	p.Gly1499Trp	p.G1499W	ENST00000301067	NM_003482.3	1499	Ggg/Tgg																																												NEWRECORD																																		
PTPN11	0	MSKCC	GRCh37	12	112924309	112924309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1199	269	420	1	ENST00000351677.2:c.1255C>T	p.His419Tyr	p.H419Y	ENST00000351677	NM_002834.3	419	Cac/Tac																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95574713	95574713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	399	411	0	ENST00000343455.3:c.2384C>T	p.Pro795Leu	p.P795L	ENST00000343455	NM_177438.2	795	cCt/cTt																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56875705	56875705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	422	568	0	ENST00000308159.5:c.2309C>T	p.Ser770Leu	p.S770L	ENST00000308159	NM_014669.4	770	tCg/tTg																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81944246	81944246	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	798	587	0	ENST00000359376.3:c.1855G>T	p.Glu619Ter	p.E619*	ENST00000359376	NM_002661.3	619	Gag/Tag																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11138626	11138626	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	455	248	0	ENST00000344626.4:c.3382G>T	p.Gly1128Ter	p.G1128*	ENST00000344626	NM_003072.3	1128	Gga/Tga																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40944505	40944505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	307	401	0	ENST00000373198.4:c.1997C>T	p.Ala666Val	p.A666V	ENST00000373198	NM_133170.3	666	gCt/gTt																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44941975	44941975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	365	297	0	ENST00000377967.4:c.3225G>T	p.Arg1075Ser	p.R1075S	ENST00000377967	NM_021140.2	1075	agG/agT																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76764086	76764086	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	294	198	0	ENST00000373344.5:c.7222A>G	p.Ile2408Val	p.I2408V	ENST00000373344	NM_000489.3	2408	Ata/Gta																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212295744	212295745	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	601	373	0	ENST00000342788.4:c.2568dup	p.Val857CysfsTer16	p.V857Cfs*16	ENST00000342788	NM_005235.2	856	-/T																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426884	49426885	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0010612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	479	341	0	ENST00000301067.7:c.11603_11604delinsTT	p.Gly3868Val	p.G3868V	ENST00000301067	NM_003482.3	3868	gGG/gTT																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	258	491	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	84	309	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174490	112174493	+	frameshift_variant	Frame_Shift_Del	DEL	CAAT	CAAT	-	rs1267727476		P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	127	548	0	ENST00000257430.4:c.3202_3205del	p.Ser1068GlyfsTer57	p.S1068Gfs*57	ENST00000257430	NM_000038.5	1067	CAATca/ca																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98270593	98270595	+	inframe_deletion	In_Frame_Del	DEL	GCC	GCC	-			P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	12	30	0	ENST00000331920.6:c.49_51delGGC	p.Gly17del	p.G17del	ENST00000331920	NM_000264.3	17	GGC/-																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48593504	48593504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	155	473	0	ENST00000342988.3:c.1255G>T	p.Gly419Trp	p.G419W	ENST00000342988	NM_005359.5	419	Ggg/Tgg																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729271	41729271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1567	236	956	1	ENST00000242208.4:c.1258G>A	p.Val420Met	p.V420M	ENST00000242208	NM_002192.2	420	Gtg/Atg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70339223	70339223	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2177	199	860	0	ENST00000374080.3:c.100G>T	p.Asp34Tyr	p.D34Y	ENST00000374080		34	Gat/Tat																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175760	112175761	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	92	420	0	ENST00000257430.4:c.4473dupT	p.Ala1492CysfsTer22	p.A1492Cfs*22	ENST00000257430	NM_000038.5	1490	cat/caTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579399	7579401	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0005307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	48	489	0	ENST00000269305.4:c.286_288del	p.Ser96del	p.S96del	ENST00000269305	NM_001126112.2	96	TCT/-																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162749952	162749952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001888-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	344	318	0	ENST00000367921.3:c.2484G>A	p.Met828Ile	p.M828I	ENST00000367921	NM_006182.2	828	atG/atA																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0001888-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	223	251	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																												NEWRECORD																																		
NF1	4763	MSKCC	GRCh37	17	29553477	29553478	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs1232596244		P-0001888-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	275	273	0	ENST00000358273.4:c.2033dup	p.Ile679AspfsTer21	p.I679Dfs*21	ENST00000358273	NM_001042492.2	676	acc/aCcc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692841	89692843	+	stop_gained	Nonsense_Mutation	ONP	GAC	GAC	TAA			P-0001888-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			57	61	99	0	ENST00000371953.3:c.325_327delinsTAA	p.Asp109Ter	p.D109*	ENST00000371953	NM_000314.4	109	GAC/TAA																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	209	324	0	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	190	349	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	343	558	0	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99170914	99170914	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			578	284	486	0	ENST00000074304.5:c.1543C>T	p.Arg515Ter	p.R515*	ENST00000074304	NM_001134224.1	515	Cga/Tga																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56152491	56152491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	228	348	0	ENST00000399503.3:c.547C>T	p.Arg183Ter	p.R183*	ENST00000399503	NM_005921.1	183	Cga/Tga																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176696676	176696676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	335	535	0	ENST00000439151.2:c.5377G>A	p.Glu1793Lys	p.E1793K	ENST00000439151	NM_022455.4	1793	Gag/Aag																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176636951	176636952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002164-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	208	441	0	ENST00000439151.2:c.1554dup	p.Glu519Ter	p.E519*	ENST00000439151	NM_022455.4	517	-/T																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	202	470	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	115	309	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	14017064	14017064	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	110	388	0	ENST00000405192.2:c.223C>G	p.Gln75Glu	p.Q75E	ENST00000405192	NM_001163147.1	75	Cag/Gag																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577566	7577567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	307	402	1	ENST00000269305.4:c.714dup	p.Asn239Ter	p.N239*	ENST00000269305	NM_001126112.2	238	-/T																																												NEWRECORD																																		
EPHB1	2047	MSKCC	GRCh37	3	134880957	134880957	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs770406411		P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	173	364	2	ENST00000398015.3:c.1520G>A	p.Arg507His	p.R507H	ENST00000398015	NM_004441.4	507	cGt/cAt																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115117718	115117718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	160	473	0	ENST00000257566.3:c.717G>C	p.Gln239His	p.Q239H	ENST00000257566	NM_016569.3	239	caG/caC																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115117765	115117765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	181	505	1	ENST00000257566.3:c.670C>A	p.Pro224Thr	p.P224T	ENST00000257566	NM_016569.3	224	Cca/Aca																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31390225	31390225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	640	415	0	ENST00000328111.2:c.2180C>G	p.Ser727Cys	p.S727C	ENST00000328111	NM_006892.3	727	tCt/tGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			319	360	536	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224																																													NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88683246	88683246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			295	94	334	0	ENST00000372037.3:c.1456C>T	p.Arg486Trp	p.R486W	ENST00000372037	NM_004329.2	486	Cgg/Tgg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			178	196	359	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56490356	56490356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			879	151	532	0	ENST00000267101.3:c.2125C>G	p.Leu709Val	p.L709V	ENST00000267101	NM_001982.3	709	Cta/Gta																																												NEWRECORD																																		
DIS3	0	MSKCC	GRCh37	13	73349482	73349482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			395	82	401	0	ENST00000377767.4:c.854G>C	p.Arg285Thr	p.R285T	ENST00000377767	NM_014953.3	285	aGa/aCa																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41256236	41256236	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			765	46	459	0	ENST00000357654.3:c.344C>G	p.Pro115Arg	p.P115R	ENST00000357654	NM_007294.3	115	cCt/cGt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48575106	48575106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			293	125	494	0	ENST00000342988.3:c.300G>T	p.Arg100Ser	p.R100S	ENST00000342988	NM_005359.5	100	agG/agT																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1619127	1619127	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			415	117	430	0	ENST00000344749.5:c.1433C>G	p.Pro478Arg	p.P478R	ENST00000344749	NM_001136139.2	478	cCt/cGt																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17953275	17953301	+	inframe_deletion	In_Frame_Del	DEL	CTTGGCCATGAGCGAGTGCCGGTCTGC	CTTGGCCATGAGCGAGTGCCGGTCTGC	-			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			502	104	438	0	ENST00000458235.1:c.685_711del	p.Ala229_Lys237del	p.A229_K237del	ENST00000458235	NM_000215.3	229	GCAGACCGGCACTCGCTCATGGCCAAG/-																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32912563	32912564	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006118-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			341	550	713	0	ENST00000380152.3:c.4074dup	p.Thr1359TyrfsTer2	p.T1359Yfs*2	ENST00000380152		1357	-/T																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	289	327	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	235	477	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65306996	65306997	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	128	342	6	ENST00000342505.4:c.2580dupA	p.Pro861ThrfsTer4	p.P861Tfs*4	ENST00000342505	NM_002227.2	860	-/A																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176719062	176719062	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	183	323	1	ENST00000439151.2:c.6366T>A	p.Phe2122Leu	p.F2122L	ENST00000439151	NM_022455.4	2122	ttT/ttA																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37056029	37056029	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	65	453	0	ENST00000231790.2:c.784A>G	p.Ile262Val	p.I262V	ENST00000231790	NM_000249.3	262	Atc/Gtc																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115975	8115976	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	33	188	0	ENST00000346208.3:c.1323dup	p.Met442HisfsTer65	p.M442Hfs*65	ENST00000346208		441	gcc/gCcc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	186	424	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	277	306	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56184101	56184101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	363	441	0	ENST00000399503.3:c.4306G>A	p.Gly1436Ser	p.G1436S	ENST00000399503	NM_005921.1	1436	Ggc/Agc																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160703	56160704	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0007564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	202	455	0	ENST00000399503.3:c.980dup	p.Leu328ProfsTer10	p.L328Pfs*10	ENST00000399503	NM_005921.1	326	tct/tcTt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	141	552	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8106074	8106075	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CC			P-0014730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	128	435	0	ENST00000346208.3:c.897_898dup	p.Leu300ProfsTer56	p.L300Pfs*56	ENST00000346208		298	-/CC																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115118851	115118851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			628	105	347	0	ENST00000257566.3:c.490A>G	p.Lys164Glu	p.K164E	ENST00000257566	NM_016569.3	164	Aaa/Gaa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178474	56178475	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	111	252	0	ENST00000399503.3:c.3449dup	p.Ser1151ValfsTer9	p.S1151Vfs*9	ENST00000399503	NM_005921.1	1149	-/A																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56184120	56184120	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014730-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	122	351	0	ENST00000399503.3:c.4325T>G	p.Met1442Arg	p.M1442R	ENST00000399503	NM_005921.1	1442	aTg/aGg																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120484194	120484194	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	141	364	0	ENST00000256646.2:c.2936T>A	p.Phe979Tyr	p.F979Y	ENST00000256646	NM_024408.3	979	tTt/tAt																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188234	10188235	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	344	381	0	ENST00000256474.2:c.378dup	p.Gly127TrpfsTer5	p.G127Wfs*5	ENST00000256474	NM_000551.3	126	gat/gaTt																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52439148	52439149	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0005226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	146	189	0	ENST00000460680.1:c.1093_1094del	p.Asn365LeufsTer32	p.N365Lfs*32	ENST00000460680	NM_004656.3	365	AAt/t																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	255	316	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	75	158	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113243	209113243	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	182	454	0	ENST00000345146.2:c.264G>T	p.Leu88Phe	p.L88F	ENST00000345146	NM_005896.2	88	ttG/ttT																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128843365	128843365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	72	323	0	ENST00000249373.3:c.472G>A	p.Glu158Lys	p.E158K	ENST00000249373	NM_005631.4	158	Gag/Aag																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93641067	93641067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	208	258	0	ENST00000375746.1:c.1413C>G	p.Ile471Met	p.I471M	ENST00000375746	NM_001174167.1	471	atC/atG																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40741220	40741220	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	199	443	0	ENST00000392038.2:c.1213G>C	p.Glu405Gln	p.E405Q	ENST00000392038	NM_001626.4	405	Gag/Cag																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151873679	151873680	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CTTGACACATGATTGGATGGGGATC			P-0010361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	42	160	0	ENST00000262189.6:c.8858_8859insGATCCCCATCCAATCATGTGTCAAG	p.Ser2953ArgfsTer23	p.S2953Rfs*23	ENST00000262189	NM_170606.2	2953	agt/agGATCCCCATCCAATCATGTGTCAAGt																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193091371	193091373	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0010361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	130	365	0	ENST00000367435.3:c.46_48del	p.Lys16del	p.K16del	ENST00000367435	NM_024529.4	14	cAGAag/cag																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12016608	12016609	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0010361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	120	359	0	ENST00000353533.5:c.744_745delinsT	p.Gly249AlafsTer27	p.G249Afs*27	ENST00000353533	NM_003010.3	248	ttCGgc/ttTgc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579391	7579392	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AAGGGACAGAAGATGA			P-0008373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	236	347	0	ENST00000269305.4:c.280_295dup	p.Ser99PhefsTer55	p.S99Ffs*55	ENST00000269305	NM_001126112.2	99	tcc/tTCATCTTCTGTCCCTTcc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55259521	55259521	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	122	325	0	ENST00000275493.2:c.2579A>T	p.Lys860Ile	p.K860I	ENST00000275493	NM_005228.3	860	aAa/aTa																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061886	38061886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	189	360	0	ENST00000250448.2:c.103A>T	p.Asn35Tyr	p.N35Y	ENST00000250448	NM_004496.3	35	Aac/Tac																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68846059	68846060	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TGGTTCAAGCTGCTGACCTTCAAGGTGAGGGGTTAAGCACAACAGC			P-0004523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	75	369	0	ENST00000261769.5:c.1031_1076dup	p.Thr360GlyfsTer5	p.T360Gfs*5	ENST00000261769	NM_004360.3	344	gtg/gTGGTTCAAGCTGCTGACCTTCAAGGTGAGGGGTTAAGCACAACAGCtg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	571	605	1	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55153691	55153691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	507	504	0	ENST00000257290.5:c.2657G>T	p.Trp886Leu	p.W886L	ENST00000257290	NM_006206.4	886	tGg/tTg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108188208	108188208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	65	341	0	ENST00000278616.4:c.6307G>A	p.Ala2103Thr	p.A2103T	ENST00000278616	NM_000051.3	2103	Gca/Aca																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175597	112175598	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0009868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	555	481	0	ENST00000257430.4:c.4307dup	p.Ser1436ArgfsTer2	p.S1436Rfs*2	ENST00000257430	NM_000038.5	1436	agt/aGgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001168-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	360	475	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78936338	78936338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001168-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1188	188	640	1	ENST00000306801.3:c.3770C>T	p.Thr1257Met	p.T1257M	ENST00000306801	NM_020761.2	1257	aCg/aTg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89717720	89717721	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TC			P-0001168-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	615	439	0	ENST00000371953.3:c.746_747insCT	p.Gly251ValfsTer6	p.G251Vfs*6	ENST00000371953	NM_000314.4	249	gtg/gTCtg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	283	757	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32914091	32914094	+	frameshift_variant	Frame_Shift_Del	DEL	ACAG	ACAG	-			P-0006568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	222	1284	0	ENST00000380152.3:c.5603_5606delACAG	p.Asp1868ValfsTer5	p.D1868Vfs*5	ENST00000380152		1867	ACAGac/ac																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66189912	66189912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	95	606	0	ENST00000273854.3:c.3034C>T	p.Leu1012Phe	p.L1012F	ENST00000273854	NM_004439.5	1012	Ctt/Ttt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151856020	151856020	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	134	770	0	ENST00000262189.6:c.11598G>C	p.Lys3866Asn	p.K3866N	ENST00000262189	NM_170606.2	3866	aaG/aaC																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115114265	115114266	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GA			P-0006568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	114	575	2	ENST00000257566.3:c.950_951dup	p.Thr318SerfsTer6	p.T318Sfs*6	ENST00000257566	NM_016569.3	317	-/TC																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			336	469	416	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			111	456	396	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93641212	93641212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			348	466	349	2	ENST00000375746.1:c.1558C>T	p.Arg520Cys	p.R520C	ENST00000375746	NM_001174167.1	520	Cgt/Tgt																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64575422	64575422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1237	287	507	0	ENST00000337652.1:c.610C>T	p.His204Tyr	p.H204Y	ENST00000337652	NM_130803.2	204	Cac/Tac																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			678	220	333	1	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag																																												NEWRECORD																																		
RPS6KB2	0	MSKCC	GRCh37	11	67196062	67196062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			2061	248	438	0	ENST00000312629.5:c.46G>A	p.Glu16Lys	p.E16K	ENST00000312629	NM_003952.2	16	Gag/Aag																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65332836	65332836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			368	187	388	0	ENST00000342505.4:c.703C>G	p.Leu235Val	p.L235V	ENST00000342505	NM_002227.2	235	Ctc/Gtc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120508147	120508147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1670	163	474	0	ENST00000256646.2:c.1610C>G	p.Ser537Cys	p.S537C	ENST00000256646	NM_024408.3	537	tCc/tGc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52649421	52649421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			866	165	470	1	ENST00000394830.3:c.1870G>A	p.Glu624Lys	p.E624K	ENST00000394830	NM_018313.4	624	Gag/Aag																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142178106	142178106	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			532	186	357	0	ENST00000350721.4:c.7312G>C	p.Glu2438Gln	p.E2438Q	ENST00000350721	NM_001184.3	2438	Gag/Cag																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186504396	186504396	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			850	53	469	0	ENST00000323963.5:c.733G>C	p.Glu245Gln	p.E245Q	ENST00000323963		245	Gaa/Caa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112178100	112178100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			946	252	485	0	ENST00000257430.4:c.6809C>G	p.Ser2270Cys	p.S2270C	ENST00000257430	NM_000038.5	2270	tCt/tGt																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33287286	33287286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			792	155	464	0	ENST00000374542.5:c.1811G>C	p.Gly604Ala	p.G604A	ENST00000374542	NM_001141970.1	604	gGa/gCa																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106523561	106523561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			699	119	363	0	ENST00000359195.3:c.2713G>A	p.Glu905Lys	p.E905K	ENST00000359195	NM_002649.2	905	Gaa/Aaa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41961477	41961477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			783	216	737	0	ENST00000219905.7:c.385C>G	p.Pro129Ala	p.P129A	ENST00000219905	NM_001164273.1	129	Cct/Gct																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91358387	91358387	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			760	356	513	1	ENST00000355112.3:c.4132G>T	p.Gly1378Ter	p.G1378*	ENST00000355112	NM_000057.2	1378	Gga/Tga																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15974947	15974947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			507	141	450	0	ENST00000268712.3:c.3928G>A	p.Asp1310Asn	p.D1310N	ENST00000268712	NM_006311.3	1310	Gat/Aat																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15974970	15974970	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			422	115	386	0	ENST00000268712.3:c.3905G>C	p.Arg1302Thr	p.R1302T	ENST00000268712	NM_006311.3	1302	aGa/aCa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29483067	29483067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			800	166	450	0	ENST00000358273.4:c.127C>G	p.Leu43Val	p.L43V	ENST00000358273	NM_001042492.2	43	Cta/Gta																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37884296	37884296	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			673	56	291	0	ENST00000269571.5:c.3767G>C	p.Ter1256SerextTer10	p.*1256Sext*10	ENST00000269571		1256	tGa/tCa																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10274007	10274007	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			604	114	422	0	ENST00000340748.4:c.873A>T	p.Lys291Asn	p.K291N	ENST00000340748		291	aaA/aaT																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17949154	17949154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			778	73	544	1	ENST00000458235.1:c.1487C>T	p.Thr496Ile	p.T496I	ENST00000458235	NM_000215.3	496	aCa/aTa																																												NEWRECORD																																		
CEBPA	0	MSKCC	GRCh37	19	33793228	33793228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			242	127	142	1	ENST00000498907.2:c.93C>A	p.Phe31Leu	p.F31L	ENST00000498907	NM_004364.3	31	ttC/ttA																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100608277	100608277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	207	668	0	ENST00000308731.7:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000308731	NM_000061.2	605	Gag/Aag																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38060942	38060943	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003903-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			592	52	281	0	ENST00000250448.2:c.1046dupT	p.Leu349PhefsTer66	p.L349Ffs*66	ENST00000250448	NM_004496.3	349	ttg/ttTg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002423-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	103	280	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76952120	76952120	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002423-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	172	240	2	ENST00000373344.5:c.315A>C	p.Glu105Asp	p.E105D	ENST00000373344	NM_000489.3	105	gaA/gaC																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150023093	150023094	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0002423-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	123	485	0	ENST00000253339.5:c.169dup	p.Met57AsnfsTer20	p.M57Nfs*20	ENST00000253339		57	atg/aAtg																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249014	55249015	+	inframe_insertion	In_Frame_Ins	INS	-	-	CGT			P-0002423-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	634	310	1	ENST00000275493.2:c.2313_2314insGTC	p.Asn771_Pro772insVal	p.N771_P772insV	ENST00000275493	NM_005228.3	771	aac/aaCGTc																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073667	8073667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	285	674	0	ENST00000377482.5:c.992G>A	p.Arg331His	p.R331H	ENST00000377482	NM_018948.3	331	cGc/cAc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11297917	11297917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	342	427	0	ENST00000361445.4:c.2191C>T	p.Arg731Cys	p.R731C	ENST00000361445	NM_004958.3	731	Cgc/Tgc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11314010	11314010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	224	586	0	ENST00000361445.4:c.726G>T	p.Glu242Asp	p.E242D	ENST00000361445	NM_004958.3	242	gaG/gaT																																												NEWRECORD																																		
SDHB	0	MSKCC	GRCh37	1	17371319	17371319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	163	546	1	ENST00000375499.3:c.137G>A	p.Arg46Gln	p.R46Q	ENST00000375499	NM_003000.2	46	cGa/cAa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27097814	27097814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	127	365	0	ENST00000324856.7:c.3403C>T	p.Pro1135Ser	p.P1135S	ENST00000324856	NM_006015.4	1135	Cct/Tct																																												NEWRECORD																																		
MYCL1	0	MSKCC	GRCh37	1	40363634	40363634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	184	278	0	ENST00000397332.2:c.595G>A	p.Glu199Lys	p.E199K	ENST00000397332	NM_001033082.2	199	Gaa/Aaa																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46527650	46527650	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	370	555	0	ENST00000262741.5:c.715G>T	p.Glu239Ter	p.E239*	ENST00000262741	NM_003629.3	239	Gaa/Taa																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46736348	46736348	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	155	486	0	ENST00000371975.4:c.1060A>G	p.Lys354Glu	p.K354E	ENST00000371975	NM_003579.3	354	Aag/Gag																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65330618	65330618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	148	384	0	ENST00000342505.4:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000342505	NM_002227.2	343	cGg/cAg																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65332628	65332628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	303	506	0	ENST00000342505.4:c.911C>T	p.Ser304Leu	p.S304L	ENST00000342505	NM_002227.2	304	tCg/tTg																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	72400888	72400888	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs200216525		P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	187	703	0	ENST00000357731.5:c.283A>G	p.Thr95Ala	p.T95A	ENST00000357731	NM_173808.2	95	Aca/Gca																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78414953	78414953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	49	374	2	ENST00000370768.2:c.1813C>T	p.Pro605Ser	p.P605S	ENST00000370768	NM_003902.3	605	Cca/Tca																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162749901	162749901	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	29	361	0	ENST00000367921.3:c.2434-1G>T		p.X812_splice	ENST00000367921	NM_006182.2	812																																													NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193094337	193094337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	29	308	0	ENST00000367435.3:c.227G>A	p.Arg76Gln	p.R76Q	ENST00000367435	NM_024529.4	76	cGa/cAa																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	327	571	1	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25982356	25982356	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	232	372	0	ENST00000435504.4:c.934C>T	p.Arg312Ter	p.R312*	ENST00000435504		312	Cga/Tga																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	26068387	26068387	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	233	449	4	ENST00000435504.4:c.103C>A	p.Leu35Ile	p.L35I	ENST00000435504		35	Ctt/Att																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29754800	29754800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	202	521	2	ENST00000389048.3:c.1135C>T	p.Pro379Ser	p.P379S	ENST00000389048	NM_004304.4	379	Ccc/Tcc																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47703539	47703539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	323	586	1	ENST00000233146.2:c.2039G>A	p.Arg680Gln	p.R680Q	ENST00000233146	NM_000251.2	680	cGa/cAa																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48023086	48023086	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	436	654	5	ENST00000234420.5:c.511G>T	p.Glu171Ter	p.E171*	ENST00000234420	NM_000179.2	171	Gaa/Taa																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48027115	48027115	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	63	554	0	ENST00000234420.5:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000234420	NM_000179.2	665	Gag/Tag																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61118941	61118941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	282	433	1	ENST00000295025.8:c.134G>A	p.Arg45Gln	p.R45Q	ENST00000295025	NM_002908.2	45	cGa/cAa																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61149129	61149129	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144119768		P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	62	481	0	ENST00000295025.8:c.1319C>T	p.Ser440Leu	p.S440L	ENST00000295025	NM_002908.2	440	tCg/tTg																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61706027	61706027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	199	602	0	ENST00000401558.2:c.3144G>T	p.Glu1048Asp	p.E1048D	ENST00000401558	NM_003400.3	1048	gaG/gaT																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61726927	61726927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	57	488	1	ENST00000401558.2:c.511C>A	p.Leu171Ile	p.L171I	ENST00000401558	NM_003400.3	171	Ctt/Att																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99189322	99189322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	114	399	0	ENST00000074304.5:c.2578C>T	p.Arg860Trp	p.R860W	ENST00000074304	NM_001134224.1	860	Cgg/Tgg																																												NEWRECORD																																		
CXCR4	0	MSKCC	GRCh37	2	136872498	136872498	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	408	713	2	ENST00000241393.3:c.1000C>T	p.Arg334Ter	p.R334*	ENST00000241393	NM_003467.2	334	Cga/Tga																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149803	202149803	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	128	411	0	ENST00000358485.4:c.1244T>G	p.Phe415Cys	p.F415C	ENST00000358485	NM_001080125.1	415	tTt/tGt																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209101857	209101857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	140	459	0	ENST00000345146.2:c.1191C>A	p.Phe397Leu	p.F397L	ENST00000345146	NM_005896.2	397	ttC/ttA																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212251841	212251841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	165	327	1	ENST00000342788.4:c.3218C>A	p.Ala1073Asp	p.A1073D	ENST00000342788	NM_005235.2	1073	gCt/gAt																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225342954	225342954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	168	549	1	ENST00000264414.4:c.2138C>A	p.Ser713Tyr	p.S713Y	ENST00000264414	NM_003590.4	713	tCt/tAt																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227662581	227662581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	173	317	0	ENST00000305123.5:c.874C>T	p.Pro292Ser	p.P292S	ENST00000305123	NM_005544.2	292	Ccc/Tcc																																												NEWRECORD																																		
RAF1	0	MSKCC	GRCh37	3	12641904	12641904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	105	311	0	ENST00000251849.4:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000251849	NM_002880.3	282	cGa/cAa																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30715686	30715686	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	104	515	0	ENST00000359013.4:c.1419C>A	p.Tyr473Ter	p.Y473*	ENST00000359013	NM_001024847.2	473	taC/taA																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165881	47165881	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	180	540	0	ENST00000409792.3:c.245A>C	p.Lys82Thr	p.K82T	ENST00000409792	NM_014159.6	82	aAa/aCa																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49405936	49405936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	506	601	2	ENST00000418115.1:c.202C>T	p.Arg68Cys	p.R68C	ENST00000418115	NM_001664.2	68	Cgc/Tgc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52582141	52582141	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	342	523	0	ENST00000394830.3:c.4687C>T	p.Arg1563Ter	p.R1563*	ENST00000394830	NM_018313.4	1563	Cga/Tga																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71021785	71021785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs112795301		P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	120	449	0	ENST00000318789.4:c.1573C>T	p.Arg525Ter	p.R525*	ENST00000318789	NM_032682.5	525	Cga/Tga																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89498521	89498521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	119	491	1	ENST00000336596.2:c.2493G>T	p.Gln831His	p.Q831H	ENST00000336596	NM_005233.5	831	caG/caT																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134873008	134873008	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201012406		P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	129	434	1	ENST00000398015.3:c.1312C>T	p.Pro438Ser	p.P438S	ENST00000398015	NM_004441.4	438	Ccc/Tcc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142168393	142168393	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	45	421	0	ENST00000350721.4:c.7813A>G	p.Thr2605Ala	p.T2605A	ENST00000350721	NM_001184.3	2605	Act/Gct																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142176561	142176561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	256	432	0	ENST00000350721.4:c.7540C>T	p.Arg2514Cys	p.R2514C	ENST00000350721	NM_001184.3	2514	Cgc/Tgc																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142274880	142274880	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	158	516	0	ENST00000350721.4:c.2180C>A	p.Ser727Tyr	p.S727Y	ENST00000350721	NM_001184.3	727	tCt/tAt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178921529	178921529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	143	372	0	ENST00000263967.3:c.1011A>C	p.Lys337Asn	p.K337N	ENST00000263967	NM_006218.2	337	aaA/aaC																																												NEWRECORD																																		
EIF4A2	0	MSKCC	GRCh37	3	186502222	186502222	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	249	665	1	ENST00000323963.5:c.31G>T	p.Glu11Ter	p.E11*	ENST00000323963		11	Gaa/Taa																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55573436	55573436	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	67	307	2	ENST00000288135.5:c.1098G>T	p.Glu366Asp	p.E366D	ENST00000288135	NM_000222.2	366	gaG/gaT																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55973911	55973911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	157	297	1	ENST00000263923.4:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000263923	NM_002253.2	469	Gag/Aag																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467631	66467631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	97	337	0	ENST00000273854.3:c.638C>G	p.Ala213Gly	p.A213G	ENST00000273854	NM_004439.5	213	gCt/gGt																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143003205	143003205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	96	470	0	ENST00000262992.4:c.2621G>A	p.Arg874Gln	p.R874Q	ENST00000262992	NM_001101669.1	874	cGa/cAa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187524510	187524510	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	122	494	0	ENST00000441802.2:c.11170G>T	p.Glu3724Ter	p.E3724*	ENST00000441802	NM_005245.3	3724	Gaa/Taa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187524525	187524525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35670235		P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	126	509	0	ENST00000441802.2:c.11155G>A	p.Val3719Met	p.V3719M	ENST00000441802	NM_005245.3	3719	Gtg/Atg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187541232	187541232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	284	499	1	ENST00000441802.2:c.6508G>A	p.Val2170Ile	p.V2170I	ENST00000441802	NM_005245.3	2170	Gtt/Att																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187557367	187557367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	82	368	0	ENST00000441802.2:c.3995G>A	p.Arg1332His	p.R1332H	ENST00000441802	NM_005245.3	1332	cGc/cAc																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1282633	1282633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	192	552	1	ENST00000310581.5:c.1680C>A	p.Phe560Leu	p.F560L	ENST00000310581	NM_198253.2	560	ttC/ttA																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177810	56177810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	90	443	0	ENST00000399503.3:c.2783C>A	p.Ser928Tyr	p.S928Y	ENST00000399503	NM_005921.1	928	tCt/tAt																																												NEWRECORD																																		
PLK2	0	MSKCC	GRCh37	5	57752383	57752383	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	128	357	0	ENST00000274289.3:c.1190A>C	p.Lys397Thr	p.K397T	ENST00000274289	NM_006622.3	397	aAg/aCg																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86645121	86645121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	80	407	0	ENST00000274376.6:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000274376	NM_002890.2	398	cGa/cAa																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86685313	86685313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	102	325	0	ENST00000274376.6:c.3029G>A	p.Arg1010Gln	p.R1010Q	ENST00000274376	NM_002890.2	1010	cGa/cAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175457	112175457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	121	396	0	ENST00000257430.4:c.4166C>A	p.Ser1389Tyr	p.S1389Y	ENST00000257430	NM_000038.5	1389	tCt/tAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112176873	112176873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	149	506	0	ENST00000257430.4:c.5582C>A	p.Ser1861Tyr	p.S1861Y	ENST00000257430	NM_000038.5	1861	tCt/tAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177653	112177653	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	221	345	1	ENST00000257430.4:c.6362C>T	p.Ala2121Val	p.A2121V	ENST00000257430	NM_000038.5	2121	gCt/gTt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	171	464	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112178314	112178314	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	88	389	0	ENST00000257430.4:c.7023A>T	p.Lys2341Asn	p.K2341N	ENST00000257430	NM_000038.5	2341	aaA/aaT																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112179765	112179765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	107	394	1	ENST00000257430.4:c.8474C>T	p.Ser2825Phe	p.S2825F	ENST00000257430	NM_000038.5	2825	tCc/tTc																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131944981	131944981	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	83	313	0	ENST00000265335.6:c.2929G>T	p.Glu977Ter	p.E977*	ENST00000265335		977	Gaa/Taa																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149457758	149457758	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	326	448	1	ENST00000286301.3:c.646C>T	p.Arg216Ter	p.R216*	ENST00000286301	NM_005211.3	216	Cga/Tga																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149500491	149500491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	69	492	0	ENST00000261799.4:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000261799	NM_002609.3	849	cGa/cAa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637141	176637141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	54	394	1	ENST00000439151.2:c.1741G>T	p.Glu581Ter	p.E581*	ENST00000439151	NM_022455.4	581	Gaa/Taa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176719061	176719061	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	66	578	0	ENST00000439151.2:c.6365T>G	p.Phe2122Cys	p.F2122C	ENST00000439151	NM_022455.4	2122	tTt/tGt																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180056274	180056274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	368	566	0	ENST00000261937.6:c.970G>A	p.Glu324Lys	p.E324K	ENST00000261937	NM_182925.4	324	Gag/Aag																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30673724	30673724	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61733207		P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	212	575	0	ENST00000376406.3:c.3236G>A	p.Arg1079His	p.R1079H	ENST00000376406	NM_014641.2	1079	cGt/cAt																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30679722	30679722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	190	558	1	ENST00000376406.3:c.1997C>T	p.Ala666Val	p.A666V	ENST00000376406	NM_014641.2	666	gCc/gTc																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30681733	30681733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	327	533	0	ENST00000376406.3:c.364C>A	p.Leu122Ile	p.L122I	ENST00000376406	NM_014641.2	122	Ctc/Atc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32171613	32171613	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	360	482	0	ENST00000375023.3:c.3165C>A	p.Cys1055Ter	p.C1055*	ENST00000375023	NM_004557.3	1055	tgC/tgA																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33288180	33288180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	100	340	0	ENST00000374542.5:c.1228G>A	p.Glu410Lys	p.E410K	ENST00000374542	NM_001141970.1	410	Gaa/Aaa																																												NEWRECORD																																		
PIM1	0	MSKCC	GRCh37	6	37140891	37140891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	219	474	1	ENST00000373509.5:c.727G>A	p.Glu243Lys	p.E243K	ENST00000373509	NM_002648.3	243	Gag/Aag																																												NEWRECORD																																		
VEGFA	0	MSKCC	GRCh37	6	43748479	43748479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs45533131		P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	183	569	1	ENST00000523873.1:c.433C>T	p.Arg145Ter	p.R145*	ENST00000523873		145	Cga/Tga																																												NEWRECORD																																		
PNRC1	0	MSKCC	GRCh37	6	89793712	89793712	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	271	437	0	ENST00000336032.3:c.781A>C	p.Asn261His	p.N261H	ENST00000336032	NM_006813.2	261	Aat/Cat																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553383	106553383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	85	269	0	ENST00000369096.4:c.1348C>A	p.Leu450Ile	p.L450I	ENST00000369096	NM_001198.3	450	Ctc/Atc																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112020867	112020867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	135	617	0	ENST00000368678.4:c.704C>A	p.Ala235Asp	p.A235D	ENST00000368678		235	gCt/gAt																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112024121	112024121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	81	722	0	ENST00000368678.4:c.664G>A	p.Glu222Lys	p.E222K	ENST00000368678		222	Gaa/Aaa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117639416	117639416	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	264	486	0	ENST00000368508.3:c.5941-1G>A		p.X1981_splice	ENST00000368508	NM_002944.2	1981																																													NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117662582	117662582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	245	468	0	ENST00000368508.3:c.4883G>A	p.Gly1628Glu	p.G1628E	ENST00000368508	NM_002944.2	1628	gGa/gAa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117683849	117683849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	154	449	0	ENST00000368508.3:c.3298G>T	p.Asp1100Tyr	p.D1100Y	ENST00000368508	NM_002944.2	1100	Gac/Tac																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117746788	117746788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	283	544	0	ENST00000368508.3:c.32T>A	p.Leu11His	p.L11H	ENST00000368508	NM_002944.2	11	cTt/cAt																																												NEWRECORD																																		
TNFAIP3	0	MSKCC	GRCh37	6	138192545	138192545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	142	421	1	ENST00000237289.4:c.181C>T	p.Arg61Trp	p.R61W	ENST00000237289	NM_001270507.1	61	Cgg/Tgg																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150023160	150023160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	309	534	0	ENST00000253339.5:c.103C>T	p.Arg35Trp	p.R35W	ENST00000253339		35	Cgg/Tgg																																												NEWRECORD																																		
LATS1	0	MSKCC	GRCh37	6	150023166	150023166	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	151	549	0	ENST00000253339.5:c.97G>T	p.Glu33Ter	p.E33*	ENST00000253339		33	Gaa/Taa																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152265535	152265535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	197	387	0	ENST00000206249.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000206249	NM_000125.3	330	Gag/Aag																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152332849	152332849	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	155	520	1	ENST00000206249.3:c.1155G>T	p.Glu385Asp	p.E385D	ENST00000206249	NM_000125.3	385	gaG/gaT																																												NEWRECORD																																		
CDK6	0	MSKCC	GRCh37	7	92252390	92252390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	106	350	0	ENST00000265734.4:c.658C>T	p.Arg220Cys	p.R220C	ENST00000265734	NM_001259.6	220	Cgt/Tgt																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140494187	140494187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	132	579	0	ENST00000288602.6:c.1061G>A	p.Arg354Gln	p.R354Q	ENST00000288602	NM_004333.4	354	cGa/cAa																																												NEWRECORD																																		
RHEB	0	MSKCC	GRCh37	7	151164255	151164255	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	131	306	0	ENST00000262187.5:c.505A>C	p.Lys169Gln	p.K169Q	ENST00000262187	NM_005614.3	169	Aaa/Caa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151873888	151873888	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	306	545	0	ENST00000262189.6:c.8650C>T	p.Arg2884Ter	p.R2884*	ENST00000262189	NM_170606.2	2884	Cga/Tga																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151879673	151879673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	65	116	0	ENST00000262189.6:c.5272C>T	p.Arg1758Cys	p.R1758C	ENST00000262189	NM_170606.2	1758	Cgt/Tgt																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90995011	90995011	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	135	385	0	ENST00000265433.3:c.110A>C	p.Asn37Thr	p.N37T	ENST00000265433	NM_002485.4	37	aAt/aCt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8465513	8465513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	107	558	1	ENST00000356435.5:c.3667C>A	p.Gln1223Lys	p.Q1223K	ENST00000356435		1223	Caa/Aaa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8518315	8518315	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	203	289	0	ENST00000356435.5:c.1076A>C	p.Lys359Thr	p.K359T	ENST00000356435		359	aAa/aCa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8636754	8636754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	40	451	0	ENST00000356435.5:c.155G>T	p.Arg52Ile	p.R52I	ENST00000356435		52	aGa/aTa																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87570325	87570325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	175	566	0	ENST00000277120.3:c.2065G>A	p.Val689Met	p.V689M	ENST00000277120		689	Gtg/Atg																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135771933	135771933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	247	395	0	ENST00000298552.3:c.3184C>T	p.Arg1062Trp	p.R1062W	ENST00000298552	NM_001162426.1	1062	Cgg/Tgg																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135772842	135772842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	139	593	0	ENST00000298552.3:c.2781G>T	p.Lys927Asn	p.K927N	ENST00000298552	NM_001162426.1	927	aaG/aaT																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139395204	139395204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	218	488	0	ENST00000277541.6:c.5734G>A	p.Asp1912Asn	p.D1912N	ENST00000277541	NM_017617.3	1912	Gac/Aac																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139438548	139438548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	111	438	0	ENST00000277541.6:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000277541	NM_017617.3	23	cGa/cAa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332258	70332258	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	384	788	0	ENST00000373644.4:c.163G>T	p.Glu55Ter	p.E55*	ENST00000373644	NM_030625.2	55	Gaa/Taa																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332424	70332424	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	230	466	0	ENST00000373644.4:c.329C>A	p.Ser110Tyr	p.S110Y	ENST00000373644	NM_030625.2	110	tCt/tAt																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70405969	70405969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	174	676	1	ENST00000373644.4:c.3483G>T	p.Lys1161Asn	p.K1161N	ENST00000373644	NM_030625.2	1161	aaG/aaT																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70442623	70442623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	311	536	0	ENST00000373644.4:c.4945C>T	p.Arg1649Trp	p.R1649W	ENST00000373644	NM_030625.2	1649	Cgg/Tgg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70451131	70451131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	167	500	1	ENST00000373644.4:c.5971G>T	p.Asp1991Tyr	p.D1991Y	ENST00000373644	NM_030625.2	1991	Gat/Tat																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123243232	123243232	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	88	741	2	ENST00000358487.5:c.2281C>A	p.Leu761Ile	p.L761I	ENST00000358487	NM_000141.4	761	Ctc/Atc																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123247514	123247514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	91	385	0	ENST00000358487.5:c.1977G>T	p.Lys659Asn	p.K659N	ENST00000358487	NM_000141.4	659	aaG/aaT																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	183	595	1	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123258036	123258036	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	68	614	0	ENST00000358487.5:c.1645A>C	p.Asn549His	p.N549H	ENST00000358487	NM_000141.4	549	Aat/Cat																																												NEWRECORD																																		
HRAS	0	MSKCC	GRCh37	11	533535	533535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	190	544	0	ENST00000311189.7:c.368G>A	p.Arg123His	p.R123H	ENST00000311189		123	cGc/cAc																																												NEWRECORD																																		
YAP1	0	MSKCC	GRCh37	11	102098284	102098284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	62	543	1	ENST00000282441.5:c.1248C>A	p.Phe416Leu	p.F416L	ENST00000282441	NM_001130145.2	416	ttC/ttA																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102206828	102206828	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1172	176	772	0	ENST00000263464.3:c.1456A>G	p.Thr486Ala	p.T486A	ENST00000263464	NM_001165.4	486	Aca/Gca																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108098533	108098533	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	101	283	0	ENST00000278616.4:c.103C>T	p.Arg35Ter	p.R35*	ENST00000278616	NM_000051.3	35	Cga/Tga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108115594	108115594	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	308	519	0	ENST00000278616.4:c.742C>T	p.Arg248Ter	p.R248*	ENST00000278616	NM_000051.3	248	Cga/Tga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108115600	108115600	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	262	520	2	ENST00000278616.4:c.748C>T	p.Arg250Ter	p.R250*	ENST00000278616	NM_000051.3	250	Cga/Tga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108180999	108180999	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	130	413	0	ENST00000278616.4:c.5875G>T	p.Glu1959Ter	p.E1959*	ENST00000278616	NM_000051.3	1959	Gaa/Taa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108216568	108216568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	151	487	0	ENST00000278616.4:c.8517C>A	p.Phe2839Leu	p.F2839L	ENST00000278616	NM_000051.3	2839	ttC/ttA																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118342413	118342413	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	49	494	0	ENST00000534358.1:c.539G>T	p.Arg180Ile	p.R180I	ENST00000534358	NM_005933.3	180	aGa/aTa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118374237	118374237	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	48	536	0	ENST00000534358.1:c.7630G>A	p.Glu2544Lys	p.E2544K	ENST00000534358	NM_005933.3	2544	Gaa/Aaa																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	461474	461474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	357	448	0	ENST00000399788.2:c.1046G>A	p.Arg349Gln	p.R349Q	ENST00000399788	NM_001042603.1	349	cGa/cAa																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4385236	4385236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	50	514	0	ENST00000261254.3:c.261C>A	p.Phe87Leu	p.F87L	ENST00000261254	NM_001759.3	87	ttC/ttA																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18466962	18466962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	303	525	1	ENST00000266497.5:c.1101G>T	p.Gln367His	p.Q367H	ENST00000266497		367	caG/caT																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245445	46245445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	76	368	0	ENST00000334344.6:c.3539C>T	p.Thr1180Met	p.T1180M	ENST00000334344	NM_152641.2	1180	aCg/aTg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46285642	46285642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	124	475	0	ENST00000334344.6:c.5002C>A	p.Leu1668Ile	p.L1668I	ENST00000334344	NM_152641.2	1668	Ctt/Att																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49418718	49418718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	211	303	1	ENST00000301067.7:c.15796C>T	p.Arg5266Cys	p.R5266C	ENST00000301067	NM_003482.3	5266	Cgc/Tgc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49432650	49432650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	88	623	0	ENST00000301067.7:c.8489G>A	p.Arg2830Gln	p.R2830Q	ENST00000301067	NM_003482.3	2830	cGa/cAa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49445026	49445026	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	99	293	0	ENST00000301067.7:c.2440C>G	p.His814Asp	p.H814D	ENST00000301067	NM_003482.3	814	Cac/Gac																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49446409	49446409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	311	433	0	ENST00000301067.7:c.1196G>A	p.Gly399Glu	p.G399E	ENST00000301067	NM_003482.3	399	gGg/gAg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49447372	49447372	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	216	496	1	ENST00000301067.7:c.726C>A	p.Phe242Leu	p.F242L	ENST00000301067	NM_003482.3	242	ttC/ttA																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50492748	50492748	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	138	483	1	ENST00000394963.4:c.1513G>T	p.Glu505Ter	p.E505*	ENST00000394963	NM_003076.4	505	Gaa/Taa																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	203	539	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	380	540	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28589298	28589298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	275	469	2	ENST00000241453.7:c.2749G>T	p.Glu917Ter	p.E917*	ENST00000241453	NM_004119.2	917	Gaa/Taa																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28623592	28623592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	96	404	2	ENST00000241453.7:c.965G>T	p.Arg322Ile	p.R322I	ENST00000241453	NM_004119.2	322	aGa/aTa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29004278	29004278	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	260	499	1	ENST00000282397.4:c.1015C>T	p.Arg339Ter	p.R339*	ENST00000282397	NM_002019.4	339	Cga/Tga																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29041180	29041180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	60	527	0	ENST00000282397.4:c.248G>T	p.Arg83Ile	p.R83I	ENST00000282397	NM_002019.4	83	aGa/aTa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32907322	32907322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	260	445	0	ENST00000380152.3:c.1707G>T	p.Gln569His	p.Q569H	ENST00000380152		569	caG/caT																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32912314	32912314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	374	744	1	ENST00000380152.3:c.3822G>T	p.Lys1274Asn	p.K1274N	ENST00000380152		1274	aaG/aaT																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32914142	32914142	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	426	818	0	ENST00000380152.3:c.5650A>C	p.Ile1884Leu	p.I1884L	ENST00000380152		1884	Att/Ctt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32914478	32914478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	195	817	0	ENST00000380152.3:c.5986G>A	p.Ala1996Thr	p.A1996T	ENST00000380152		1996	Gca/Aca																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32920972	32920972	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	70	402	0	ENST00000380152.3:c.6946A>C	p.Lys2316Gln	p.K2316Q	ENST00000380152		2316	Aaa/Caa																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103510743	103510743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	139	406	0	ENST00000355739.4:c.647G>T	p.Arg216Ile	p.R216I	ENST00000355739	NM_000123.3	216	aGa/aTa																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103524594	103524594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	262	462	2	ENST00000355739.4:c.2725C>T	p.Pro909Ser	p.P909S	ENST00000355739	NM_000123.3	909	Cct/Tct																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95557615	95557615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	140	516	1	ENST00000343455.3:c.5452G>A	p.Ala1818Thr	p.A1818T	ENST00000343455	NM_177438.2	1818	Gcc/Acc																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95573964	95573964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	72	450	1	ENST00000343455.3:c.2785G>T	p.Asp929Tyr	p.D929Y	ENST00000343455	NM_177438.2	929	Gat/Tat																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95574324	95574324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	114	458	0	ENST00000343455.3:c.2543G>T	p.Arg848Ile	p.R848I	ENST00000343455	NM_177438.2	848	aGa/aTa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	41961330	41961330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	432	716	0	ENST00000219905.7:c.238G>A	p.Asp80Asn	p.D80N	ENST00000219905	NM_001164273.1	80	Gat/Aat																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42003060	42003060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	78	773	1	ENST00000219905.7:c.2597G>A	p.Arg866Gln	p.R866Q	ENST00000219905	NM_001164273.1	866	cGa/cAa																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88690568	88690568	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	126	385	0	ENST00000360948.2:c.462A>C	p.Glu154Asp	p.E154D	ENST00000360948	NM_001012338.2	154	gaA/gaC																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91304460	91304460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	53	334	0	ENST00000355112.3:c.1857C>A	p.Phe619Leu	p.F619L	ENST00000355112	NM_000057.2	619	ttC/ttA																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99467206	99467206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	140	522	0	ENST00000268035.6:c.2587C>A	p.Leu863Ile	p.L863I	ENST00000268035	NM_000875.3	863	Cta/Ata																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	339599	339599	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138816818		P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	176	429	1	ENST00000262320.3:c.2303C>T	p.Ser768Leu	p.S768L	ENST00000262320	NM_003502.3	768	tCg/tTg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3828772	3828772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	154	566	1	ENST00000262367.5:c.1870C>T	p.Arg624Cys	p.R624C	ENST00000262367	NM_004380.2	624	Cgc/Tgc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858394	9858394	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	215	447	0	ENST00000330684.3:c.3007G>T	p.Glu1003Ter	p.E1003*	ENST00000330684	NM_001134407.1	1003	Gaa/Taa																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14031641	14031641	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	274	511	1	ENST00000311895.7:c.1830C>A	p.Tyr610Ter	p.Y610*	ENST00000311895	NM_005236.2	610	taC/taA																																												NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23632792	23632792	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	109	339	0	ENST00000261584.4:c.3004G>T	p.Glu1002Ter	p.E1002*	ENST00000261584	NM_024675.3	1002	Gaa/Taa																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828552	72828552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	558	758	2	ENST00000268489.5:c.8029G>A	p.Glu2677Lys	p.E2677K	ENST00000268489	NM_006885.3	2677	Gag/Aag																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89347725	89347725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	531	663	1	ENST00000301030.4:c.5225C>T	p.Ser1742Leu	p.S1742L	ENST00000301030	NM_001256183.1	1742	tCg/tTg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89351986	89351986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1460	332	762	3	ENST00000301030.4:c.964G>A	p.Glu322Lys	p.E322K	ENST00000301030	NM_001256183.1	322	Gag/Aag																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89371736	89371736	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	385	496	0	ENST00000301030.4:c.104C>A	p.Ser35Tyr	p.S35Y	ENST00000301030	NM_001256183.1	35	tCt/tAt																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89877132	89877132	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	125	489	0	ENST00000389301.3:c.505G>T	p.Glu169Ter	p.E169*	ENST00000389301	NM_000135.2	169	Gaa/Taa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577077	7577077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	35	474	0	ENST00000269305.4:c.861G>T	p.Glu287Asp	p.E287D	ENST00000269305	NM_001126112.2	287	gaG/gaT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1262	26	592	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17118374	17118374	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200660337		P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	159	467	3	ENST00000285071.4:c.1463C>T	p.Ala488Val	p.A488V	ENST00000285071	NM_144997.5	488	gCg/gTg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29552222	29552222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	104	488	1	ENST00000358273.4:c.1955G>A	p.Arg652His	p.R652H	ENST00000358273	NM_001042492.2	652	cGt/cAt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29556313	29556313	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	160	534	0	ENST00000358273.4:c.2680T>G	p.Phe894Val	p.F894V	ENST00000358273	NM_001042492.2	894	Ttt/Gtt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	313	406	1	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30325752	30325752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	71	278	0	ENST00000322652.5:c.1950G>T	p.Lys650Asn	p.K650N	ENST00000322652	NM_015355.2	650	aaG/aaT																																												NEWRECORD																																		
SUZ12	0	MSKCC	GRCh37	17	30325849	30325849	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	115	446	0	ENST00000322652.5:c.2047G>T	p.Glu683Ter	p.E683*	ENST00000322652	NM_015355.2	683	Gaa/Taa																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627201	37627201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	150	454	0	ENST00000447079.4:c.1116G>T	p.Lys372Asn	p.K372N	ENST00000447079	NM_015083.1	372	aaG/aaT																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41244368	41244368	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	145	588	0	ENST00000357654.3:c.3180A>C	p.Glu1060Asp	p.E1060D	ENST00000357654	NM_007294.3	1060	gaA/gaC																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41245759	41245759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	139	474	0	ENST00000357654.3:c.1789G>A	p.Glu597Lys	p.E597K	ENST00000357654	NM_007294.3	597	Gaa/Aaa																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47700110	47700110	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	136	383	0	ENST00000347630.2:c.63T>G	p.Ser21Arg	p.S21R	ENST00000347630	NM_001007230.1	21	agT/agG																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56440734	56440734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	305	442	0	ENST00000407977.2:c.484G>C	p.Val162Leu	p.V162L	ENST00000407977		162	Gtg/Ctg																																												NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58677944	58677944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	160	419	2	ENST00000305921.3:c.169G>A	p.Ala57Thr	p.A57T	ENST00000305921	NM_003620.3	57	Gcc/Acc																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63531801	63531801	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200460573		P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	196	541	1	ENST00000307078.5:c.2180C>T	p.Ser727Leu	p.S727L	ENST00000307078	NM_004655.3	727	tCg/tTg																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63537656	63537656	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201387209		P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	187	562	0	ENST00000307078.5:c.976C>T	p.Arg326Cys	p.R326C	ENST00000307078	NM_004655.3	326	Cgt/Tgt																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604790	48604790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	91	433	1	ENST00000342988.3:c.1612G>A	p.Glu538Lys	p.E538K	ENST00000342988	NM_005359.5	538	Gaa/Aaa																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5211615	5211615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	132	393	0	ENST00000357368.4:c.5220C>A	p.Phe1740Leu	p.F1740L	ENST00000357368	NM_002850.3	1740	ttC/ttA																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7117249	7117249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	150	529	0	ENST00000302850.5:c.3967G>A	p.Asp1323Asn	p.D1323N	ENST00000302850	NM_000208.2	1323	Gac/Aac																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7174602	7174602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	462	490	0	ENST00000302850.5:c.1115G>A	p.Arg372Gln	p.R372Q	ENST00000302850	NM_000208.2	372	cGa/cAa																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10267124	10267124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	66	546	1	ENST00000340748.4:c.1294G>A	p.Glu432Lys	p.E432K	ENST00000340748		432	Gaa/Aaa																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11114047	11114047	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	244	631	1	ENST00000344626.4:c.1975G>T	p.Glu659Ter	p.E659*	ENST00000344626	NM_003072.3	659	Gaa/Taa																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11144820	11144820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	220	513	0	ENST00000344626.4:c.3895G>A	p.Asp1299Asn	p.D1299N	ENST00000344626	NM_003072.3	1299	Gac/Aac																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11145689	11145689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	443	569	1	ENST00000344626.4:c.4051G>A	p.Asp1351Asn	p.D1351N	ENST00000344626	NM_003072.3	1351	Gac/Aac																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17951059	17951059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	387	541	0	ENST00000458235.1:c.1234C>A	p.Leu412Ile	p.L412I	ENST00000458235	NM_000215.3	412	Ctc/Atc																																												NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45856532	45856532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201165309		P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	197	560	0	ENST00000391945.4:c.1726G>A	p.Glu576Lys	p.E576K	ENST00000391945	NM_000400.3	576	Gaa/Aaa																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9538331	9538331	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	316	566	0	ENST00000353224.5:c.1667T>C	p.Leu556Pro	p.L556P	ENST00000353224	NM_177990.2	556	cTc/cCc																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31023666	31023666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	143	595	0	ENST00000375687.4:c.3151C>T	p.Arg1051Cys	p.R1051C	ENST00000375687	NM_015338.5	1051	Cgt/Tgt																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31024664	31024664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	389	547	0	ENST00000375687.4:c.4149G>T	p.Glu1383Asp	p.E1383D	ENST00000375687	NM_015338.5	1383	gaG/gaT																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31388711	31388711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	279	426	1	ENST00000328111.2:c.1976C>T	p.Pro659Leu	p.P659L	ENST00000328111	NM_006892.3	659	cCa/cTa																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39709856	39709856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	98	344	1	ENST00000361337.2:c.483G>T	p.Lys161Asn	p.K161N	ENST00000361337	NM_003286.2	161	aaG/aaT																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39713142	39713142	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	123	511	0	ENST00000361337.2:c.548A>C	p.Lys183Thr	p.K183T	ENST00000361337	NM_003286.2	183	aAa/aCa																																												NEWRECORD																																		
TOP1	0	MSKCC	GRCh37	20	39728718	39728718	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	96	326	0	ENST00000361337.2:c.998A>C	p.Lys333Thr	p.K333T	ENST00000361337	NM_003286.2	333	aAa/aCa																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41420103	41420103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	61	271	0	ENST00000373198.4:c.218C>A	p.Ser73Tyr	p.S73Y	ENST00000373198	NM_133170.3	73	tCt/tAt																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46262324	46262324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	407	764	0	ENST00000371998.3:c.908G>T	p.Arg303Ile	p.R303I	ENST00000371998		303	aGa/aTa																																												NEWRECORD																																		
CHEK2	0	MSKCC	GRCh37	22	29090089	29090089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	41	85	0	ENST00000328354.6:c.1392G>T	p.Lys464Asn	p.K464N	ENST00000328354	NM_007194.3	464	aaG/aaT																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41537100	41537100	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	294	435	1	ENST00000263253.7:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000263253	NM_001429.3	643	Gaa/Taa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44732861	44732861	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	198	201	0	ENST00000377967.4:c.64G>T	p.Glu22Ter	p.E22*	ENST00000377967	NM_021140.2	22	Gaa/Taa																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66765887	66765887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	37	315	0	ENST00000374690.3:c.899G>A	p.Gly300Asp	p.G300D	ENST00000374690	NM_000044.3	300	gGc/gAc																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70347744	70347744	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	180	292	2	ENST00000374080.3:c.2983G>A	p.Asp995Asn	p.D995N	ENST00000374080		995	Gac/Aac																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76776304	76776304	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	378	356	0	ENST00000373344.5:c.7162G>T	p.Glu2388Ter	p.E2388*	ENST00000373344	NM_000489.3	2388	Gaa/Taa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937317	76937317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	28	213	0	ENST00000373344.5:c.3431G>T	p.Arg1144Ile	p.R1144I	ENST00000373344	NM_000489.3	1144	aGa/aTa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76937587	76937587	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	275	234	0	ENST00000373344.5:c.3161C>A	p.Ser1054Tyr	p.S1054Y	ENST00000373344	NM_000489.3	1054	tCt/tAt																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76939761	76939761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	192	342	0	ENST00000373344.5:c.987G>T	p.Lys329Asn	p.K329N	ENST00000373344	NM_000489.3	329	aaG/aaT																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123164853	123164853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	49	363	0	ENST00000218089.9:c.166G>A	p.Gly56Ser	p.G56S	ENST00000218089	NM_001042749.1	56	Ggt/Agt																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6045566	6045567	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	45	241	0	ENST00000265849.7:c.119dup	p.Glu41GlyfsTer13	p.E41Gfs*13	ENST00000265849	NM_000535.5	40	aag/aaAg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426876	49426876	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	327	502	1	ENST00000301067.7:c.11612del	p.Ala3871GlufsTer10	p.A3871Efs*10	ENST00000301067	NM_003482.3	3871	gCa/ga																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49416504	49416504	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	350	475	0	ENST00000301067.7:c.16207del	p.Arg5403AlafsTer15	p.R5403Afs*15	ENST00000301067	NM_003482.3	5403	Cgc/gc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643328	52643328	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0008053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	35	560	0	ENST00000394830.3:c.2567+1G>C		p.X856_splice	ENST00000394830	NM_018313.4	856																																													NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10191582	10191583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	53	642	0	ENST00000256474.2:c.578dup	p.Asn193LysfsTer63	p.N193Kfs*63	ENST00000256474	NM_000551.3	192	cca/ccAa																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165229	47165229	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	45	579	0	ENST00000409792.3:c.897del	p.Leu300Ter	p.L300*	ENST00000409792	NM_014159.6	299	agT/ag																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577329	64577330	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	55	532	1	ENST00000337652.1:c.252dup	p.Ile85TyrfsTer32	p.I85Yfs*32	ENST00000337652	NM_130803.2	84	-/T																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187540935	187540935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	12	255	0	ENST00000441802.2:c.6805G>A	p.Val2269Met	p.V2269M	ENST00000441802	NM_005245.3	2269	Gtg/Atg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151879277	151879277	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	36	383	0	ENST00000262189.6:c.5668C>T	p.Arg1890Ter	p.R1890*	ENST00000262189	NM_170606.2	1890	Cga/Tga																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27094426	27094427	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	73	352	0	ENST00000324856.7:c.3135dup	p.Arg1046Ter	p.R1046*	ENST00000324856	NM_006015.4	1045	ggt/ggTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578469	7578470	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CGGG			P-0002317-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	419	374	0	ENST00000269305.4:c.457_460dup	p.Gly154AlafsTer28	p.G154Afs*28	ENST00000269305	NM_001126112.2	154	ggc/gCCCGgc																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	257	398	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	35	368	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat																																												NEWRECORD																																		
ESR1	2099	MSKCC	GRCh37	6	152382152	152382154	+	inframe_deletion	In_Frame_Del	DEL	TGG	TGG	-			P-0005153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	106	291	0	ENST00000206249.3:c.1265_1267del	p.Val422del	p.V422del	ENST00000206249	NM_000125.3	421	aTGGtg/atg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0005153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	227	433	0	ENST00000346208.3:c.1220_1221insT	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcTg																																												NEWRECORD																																		
CXCR4	0	MSKCC	GRCh37	2	136873020	136873020	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147198552		P-0005153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	222	887	1	ENST00000241393.3:c.478G>A	p.Val160Ile	p.V160I	ENST00000241393	NM_003467.2	160	Gtc/Atc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212288883	212288883	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	86	253	0	ENST00000342788.4:c.2863A>T	p.Lys955Ter	p.K955*	ENST00000342788	NM_005235.2	955	Aaa/Taa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	70	709	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																												NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856658	111856658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	33	360	0	ENST00000341259.2:c.709C>A	p.Leu237Met	p.L237M	ENST00000341259	NM_005475.2	237	Ctg/Atg																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98242279	98242279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	50	565	1	ENST00000331920.6:c.1039G>T	p.Val347Phe	p.V347F	ENST00000331920	NM_000264.3	347	Gtc/Ttc																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139410498	139410520	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCTGGCACACTCGTCCACATC	GTGCTGGCACACTCGTCCACATC	-			P-0014096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	46	795	0	ENST00000277541.6:c.1582_1604del	p.Asp528ProfsTer34	p.D528Pfs*34	ENST00000277541	NM_017617.3	528	GATGTGGACGAGTGTGCCAGCACc/c																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48951122	48951128	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	GAAATTT	GAAATTT	TGTATAGGATACATCTTTAAA			P-0014096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	43	488	0	ENST00000267163.4:c.1284_1290delinsTGTATAGGATACATCTTTAAA	p.Glu428AspfsTer3	p.E428Dfs*3	ENST00000267163	NM_000321.2	428	gaGAAATTT/gaTGTATAGGATACATCTTTAAA																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89156968	89156968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	179	308	1	ENST00000336596.2:c.70C>A	p.Pro24Thr	p.P24T	ENST00000336596	NM_005233.5	24	Ccg/Acg																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100999711	100999711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	234	587	0	ENST00000325455.5:c.91C>A	p.Pro31Thr	p.P31T	ENST00000325455	NM_001202474.3	31	Cca/Aca																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	86	356	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	176	433	2	ENST00000267101.3:c.889G>T	p.Asp297Tyr	p.D297Y	ENST00000267101	NM_001982.3	297	Gat/Tat																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72829889	72829889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	263	698	3	ENST00000268489.5:c.6692C>T	p.Pro2231Leu	p.P2231L	ENST00000268489	NM_006885.3	2231	cCg/cTg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29670066	29670066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	176	507	0	ENST00000358273.4:c.7102G>A	p.Glu2368Lys	p.E2368K	ENST00000358273	NM_001042492.2	2368	Gag/Aag																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50920463	50920463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	127	413	0	ENST00000440232.2:c.3155C>G	p.Ser1052Trp	p.S1052W	ENST00000440232	NM_002691.3	1052	tCg/tGg																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70356741	70356741	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1372	81	560	0	ENST00000374080.3:c.5413G>T	p.Gly1805Cys	p.G1805C	ENST00000374080		1805	Ggc/Tgc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916929	178916937	+	inframe_deletion	In_Frame_Del	DEL	GGCAACCGT	GGCAACCGT	-			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	163	696	0	ENST00000263967.3:c.317_325delGCAACCGTG	p.Gly106_Arg108del	p.G106_R108del	ENST00000263967	NM_006218.2	106	GGCAACCGT/-																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	78	205	0	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68835700	68835700	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	221	485	0	ENST00000261769.5:c.293del	p.Phe98SerfsTer19	p.F98Sfs*19	ENST00000261769	NM_004360.3	97	caT/ca																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8074217	8074217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1436	258	1172	4	ENST00000377482.5:c.442C>T	p.Arg148Trp	p.R148W	ENST00000377482	NM_018948.3	148	Cgg/Tgg																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111881363	111881363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			678	309	561	2	ENST00000393256.3:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000393256	NM_006538.4	14	cGa/cAa																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158627002	158627002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	247	944	0	ENST00000263640.3:c.668G>T	p.Trp223Leu	p.W223L	ENST00000263640	NM_001105.4	223	tGg/tTg																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37042536	37042536	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			669	324	658	0	ENST00000231790.2:c.298C>T	p.Arg100Ter	p.R100*	ENST00000231790	NM_000249.3	100	Cga/Tga																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			704	146	427	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106196838	106196838	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			737	124	527	0	ENST00000380013.4:c.5171A>G	p.Tyr1724Cys	p.Y1724C	ENST00000380013	NM_001127208.2	1724	tAt/tGt																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143081567	143081567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			743	167	597	0	ENST00000262992.4:c.1507G>A	p.Val503Met	p.V503M	ENST00000262992	NM_001101669.1	503	Gtg/Atg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187519219	187519219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			766	55	556	1	ENST00000441802.2:c.12164C>A	p.Pro4055Gln	p.P4055Q	ENST00000441802	NM_005245.3	4055	cCg/cAg																																												NEWRECORD																																		
RASA1	5921	MSKCC	GRCh37	5	86629103	86629103	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs753769946		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			658	107	475	0	ENST00000274376.6:c.848G>A	p.Arg283His	p.R283H	ENST00000274376	NM_002890.2	283	cGt/cAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			598	126	421	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga																																												NEWRECORD																																		
RAC1	0	MSKCC	GRCh37	7	6431646	6431646	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			543	112	377	0	ENST00000356142.4:c.199T>A	p.Leu67Ile	p.L67I	ENST00000356142	NM_018890.3	67	Tta/Ata																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860143	151860143	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			748	140	538	1	ENST00000262189.6:c.10519C>T	p.Arg3507Ter	p.R3507*	ENST00000262189	NM_170606.2	3507	Cga/Tga																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209340	98209340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			723	150	516	1	ENST00000331920.6:c.4198G>T	p.Gly1400Cys	p.G1400C	ENST00000331920	NM_000264.3	1400	Ggc/Tgc																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98238357	98238357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			492	203	512	1	ENST00000331920.6:c.1687G>A	p.Ala563Thr	p.A563T	ENST00000331920	NM_000264.3	563	Gcg/Acg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139395218	139395218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			611	130	523	1	ENST00000277541.6:c.5720C>T	p.Pro1907Leu	p.P1907L	ENST00000277541	NM_017617.3	1907	cCg/cTg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139396823	139396823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			399	119	386	1	ENST00000277541.6:c.5285G>A	p.Arg1762Gln	p.R1762Q	ENST00000277541	NM_017617.3	1762	cGg/cAg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139399156	139399156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			394	83	403	0	ENST00000277541.6:c.4987C>T	p.Arg1663Trp	p.R1663W	ENST00000277541	NM_017617.3	1663	Cgg/Tgg																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139405696	139405696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			720	62	583	0	ENST00000277541.6:c.2495C>A	p.Pro832Gln	p.P832Q	ENST00000277541	NM_017617.3	832	cCg/cAg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108115685	108115685	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			500	102	383	0	ENST00000278616.4:c.833T>A	p.Val278Asp	p.V278D	ENST00000278616	NM_000051.3	278	gTc/gAc																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118392801	118392801	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			697	137	542	0	ENST00000534358.1:c.11833T>C	p.Tyr3945His	p.Y3945H	ENST00000534358	NM_005933.3	3945	Tac/Cac																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			525	258	485	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56474086	56474086	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			568	38	492	0	ENST00000267101.3:c.2T>C	p.Met1?	p.M1?	ENST00000267101	NM_001982.3	1	aTg/aCg																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			377	174	327	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115110073	115110073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			305	70	297	0	ENST00000257566.3:c.1805C>A	p.Pro602His	p.P602H	ENST00000257566	NM_016569.3	602	cCt/cAt																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32906954	32906954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			601	63	260	0	ENST00000380152.3:c.1339C>T	p.Pro447Ser	p.P447S	ENST00000380152		447	Cca/Tca																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32937368	32937368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			768	125	394	1	ENST00000380152.3:c.8029G>A	p.Glu2677Lys	p.E2677K	ENST00000380152		2677	Gaa/Aaa																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110434595	110434595	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			483	67	301	0	ENST00000375856.3:c.3806A>C	p.Gln1269Pro	p.Q1269P	ENST00000375856	NM_003749.2	1269	cAg/cCg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42041041	42041041	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1246	242	1037	0	ENST00000219905.7:c.5419C>T	p.Gln1807Ter	p.Q1807*	ENST00000219905	NM_001164273.1	1807	Cag/Tag																																												NEWRECORD																																		
B2M	0	MSKCC	GRCh37	15	45003812	45003812	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			572	262	419	0	ENST00000558401.1:c.67+1G>A		p.X23_splice	ENST00000558401	NM_004048.2	23																																													NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88727490	88727490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			426	254	446	2	ENST00000360948.2:c.289G>A	p.Val97Met	p.V97M	ENST00000360948	NM_001012338.2	97	Gtg/Atg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3842097	3842097	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			510	109	349	0	ENST00000262367.5:c.1217-2A>G		p.X406_splice	ENST00000262367	NM_004380.2	406																																													NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89346436	89346436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			849	193	924	3	ENST00000301030.4:c.6514G>A	p.Gly2172Arg	p.G2172R	ENST00000301030	NM_001256183.1	2172	Ggg/Agg																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41219713	41219713	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			625	66	436	0	ENST00000357654.3:c.4987-1G>T		p.X1663_splice	ENST00000357654	NM_007294.3	1663																																													NEWRECORD																																		
PPM1D	0	MSKCC	GRCh37	17	58677977	58677977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			373	69	343	0	ENST00000305921.3:c.202C>A	p.Pro68Thr	p.P68T	ENST00000305921	NM_003620.3	68	Cca/Aca																																												NEWRECORD																																		
BCL2	0	MSKCC	GRCh37	18	60985514	60985514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			744	140	542	4	ENST00000333681.4:c.386G>A	p.Arg129His	p.R129H	ENST00000333681		129	cGc/cAc																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11098446	11098446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			367	80	385	1	ENST00000344626.4:c.964G>A	p.Ala322Thr	p.A322T	ENST00000344626	NM_003072.3	322	Gcc/Acc																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15302975	15302975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			252	62	262	0	ENST00000263388.2:c.475G>A	p.Val159Met	p.V159M	ENST00000263388	NM_000435.2	159	Gtg/Atg																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17955130	17955130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			425	122	410	0	ENST00000458235.1:c.97C>T	p.Arg33Trp	p.R33W	ENST00000458235	NM_000215.3	33	Cgg/Tgg																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44929472	44929472	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			553	271	469	2	ENST00000377967.4:c.2572G>T	p.Gly858Trp	p.G858W	ENST00000377967	NM_021140.2	858	Ggg/Tgg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			413	231	570	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																												NEWRECORD																																		
AXIN2	8313	MSKCC	GRCh37	17	63532585	63532585	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs267606674		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			508	109	457	1	ENST00000307078.5:c.1994del	p.Gly665AlafsTer24	p.G665Afs*24	ENST00000307078	NM_004655.3	665	gGc/gc																																												NEWRECORD																																		
PALB2	79728	MSKCC	GRCh37	16	23647028	23647028	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			792	133	565	0	ENST00000261584.4:c.839del	p.Asn280ThrfsTer8	p.N280Tfs*8	ENST00000261584	NM_024675.3	280	aAc/ac																																												NEWRECORD																																		
PDCD1	5133	MSKCC	GRCh37	2	242795104	242795104	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			509	74	549	0	ENST00000334409.5:c.105del	p.Thr36ProfsTer9	p.T36Pfs*9	ENST00000334409	NM_005018.2	35	ccC/cc																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			535	106	443	1	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244156	153244156	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	180	648	2	ENST00000281708.4:c.2001del	p.Ser668ValfsTer39	p.S668Vfs*39	ENST00000281708	NM_033632.3	667	ggG/gg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023903	27023904	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			251	24	185	0	ENST00000324856.7:c.1015dup	p.Ala339GlyfsTer61	p.A339Gfs*61	ENST00000324856	NM_006015.4	337	tgg/tGgg																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156846307	156846308	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			683	130	615	2	ENST00000524377.1:c.1753dup	p.Leu585ProfsTer6	p.L585Pfs*6	ENST00000524377	NM_002529.3	583	cgc/cgCc																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			424	73	307	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5238958	5238958	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			356	61	380	0	ENST00000357368.4:c.1821delC	p.Val608TrpfsTer30	p.V608Wfs*30	ENST00000357368	NM_002850.3	607	ccC/cc																																												NEWRECORD																																		
CCND3	0	MSKCC	GRCh37	6	41903745	41903746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	128	623	1	ENST00000372991.4:c.811dupC	p.Arg271ProfsTer53	p.R271Pfs*53	ENST00000372991	NM_001760.3	271	cgg/cCgg																																												NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39923086	39923087	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			396	189	459	0	ENST00000378444.4:c.3621dup	p.Gln1208ThrfsTer8	p.Q1208Tfs*8	ENST00000378444	NM_001123385.1	1207	-/A																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47161939	47161939	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			591	93	411	0	ENST00000409792.3:c.4187del	p.Asn1396MetfsTer16	p.N1396Mfs*16	ENST00000409792	NM_014159.6	1396	aAt/at																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32907283	32907283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			954	135	448	0	ENST00000380152.3:c.1670del	p.Leu557Ter	p.L557*	ENST00000380152		556	aaT/aa																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41215361	41215361	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			824	145	625	0	ENST00000357654.3:c.5182del	p.Met1728CysfsTer2	p.M1728Cfs*2	ENST00000357654	NM_007294.3	1728	Atg/tg																																												NEWRECORD																																		
PPM1D	8493	MSKCC	GRCh37	17	58740623	58740624	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs763475304		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1367	241	1033	2	ENST00000305921.3:c.1535dup	p.Asn512LysfsTer16	p.N512Kfs*16	ENST00000305921	NM_003620.3	510	caa/cAaa																																												NEWRECORD																																		
ARID1B	57492	MSKCC	GRCh37	6	157099468	157099470	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-	rs1429292576		P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			765	118	502	0	ENST00000346085.5:c.413_415del	p.Asn138del	p.N138del	ENST00000346085	NM_020732.3	135	tcCAAc/tcc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42796882	42796883	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			670	124	727	0	ENST00000575354.2:c.3347dupC	p.Ser1117LysfsTer34	p.S1117Kfs*34	ENST00000575354	NM_015125.3	1114	gcc/gCcc																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106156320	106156321	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			559	108	380	0	ENST00000380013.4:c.1226dup	p.Pro410SerfsTer33	p.P410Sfs*33	ENST00000380013	NM_001127208.2	407	-/C																																												NEWRECORD																																		
MSH6	0	MSKCC	GRCh37	2	48033792	48033795	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TAAC	TAAC	-			P-0008226-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			529	91	367	0	ENST00000234420.5:c.4001+12_4001+15delACTA		p.X1334_splice	ENST00000234420	NM_000179.2	1334																																													NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27101402	27101402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	34	357	1	ENST00000324856.7:c.4689del	p.Met1564Ter	p.M1564*	ENST00000324856	NM_006015.4	1562	Ccc/cc																																												NEWRECORD																																		
SETD2	29072	MSKCC	GRCh37	3	47161907	47161907	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	63	499	1	ENST00000409792.3:c.4219del	p.Arg1407GlyfsTer5	p.R1407Gfs*5	ENST00000409792	NM_014159.6	1407	Agg/gg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	17	338	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	11	146	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177787	112177787	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	33	368	0	ENST00000257430.4:c.6496C>T	p.Arg2166Ter	p.R2166*	ENST00000257430	NM_000038.5	2166	Cga/Tga																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435160	56435161	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C	rs755128667		P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	26	261	0	ENST00000407977.2:c.1976dup	p.Pro660SerfsTer87	p.P660Sfs*87	ENST00000407977		659	ggt/ggGt																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99182169	99182169	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	20	423	0	ENST00000074304.5:c.2234A>C	p.Lys745Thr	p.K745T	ENST00000074304	NM_001134224.1	745	aAa/aCa																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37061805	37061805	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	23	468	0	ENST00000231790.2:c.889G>T	p.Glu297Ter	p.E297*	ENST00000231790	NM_000249.3	297	Gaa/Taa																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134911607	134911607	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	15	349	0	ENST00000398015.3:c.2072G>T	p.Arg691Leu	p.R691L	ENST00000398015	NM_004441.4	691	cGg/cTg																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131927019	131927019	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140333740		P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			343	44	475	0	ENST00000265335.6:c.1556G>A	p.Arg519His	p.R519H	ENST00000265335		519	cGt/cAt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117683942	117683942	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	25	515	0	ENST00000368508.3:c.3205T>C	p.Trp1069Arg	p.W1069R	ENST00000368508	NM_002944.2	1069	Tgg/Cgg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151878176	151878176	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	25	345	0	ENST00000262189.6:c.6769C>T	p.Arg2257Ter	p.R2257*	ENST00000262189	NM_170606.2	2257	Cga/Tga																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139393576	139393576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			250	35	384	0	ENST00000277541.6:c.6070G>A	p.Val2024Ile	p.V2024I	ENST00000277541	NM_017617.3	2024	Gta/Ata																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139402690	139402690	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	38	372	0	ENST00000277541.6:c.3319C>T	p.Arg1107Ter	p.R1107*	ENST00000277541	NM_017617.3	1107	Cga/Tga																																												NEWRECORD																																		
HRAS	0	MSKCC	GRCh37	11	533877	533877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	30	468	0	ENST00000311189.7:c.179G>A	p.Gly60Asp	p.G60D	ENST00000311189		60	gGc/gAc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56490834	56490834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	28	343	0	ENST00000267101.3:c.2280G>A	p.Met760Ile	p.M760I	ENST00000267101	NM_001982.3	760	atG/atA																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88679253	88679253	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	17	423	0	ENST00000360948.2:c.784A>T	p.Asn262Tyr	p.N262Y	ENST00000360948	NM_001012338.2	262	Aat/Tat																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7267704	7267704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	25	345	0	ENST00000302850.5:c.304C>A	p.Leu102Met	p.L102M	ENST00000302850	NM_000208.2	102	Ctg/Atg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15298740	15298740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	42	447	0	ENST00000263388.2:c.1558G>A	p.Ala520Thr	p.A520T	ENST00000263388	NM_000435.2	520	Gcc/Acc																																												NEWRECORD																																		
MEF2B	0	MSKCC	GRCh37	19	19256680	19256680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	29	333	0	ENST00000162023.5:c.1033C>T	p.Arg345Trp	p.R345W	ENST00000162023		345	Cgg/Tgg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045676	47045676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	17	355	0	ENST00000329236.7:c.2323C>T	p.Arg775Trp	p.R775W	ENST00000329236	NM_001204466.1	775	Cgg/Tgg																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30648383	30648383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	23	270	0	ENST00000359013.4:c.12del	p.Leu5CysfsTer50	p.L5Cfs*50	ENST00000359013	NM_001024847.2	3	cGg/cg																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37038183	37038184	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	37	440	0	ENST00000231790.2:c.190_191del	p.Asn64TrpfsTer14	p.N64Wfs*14	ENST00000231790	NM_000249.3	64	AAt/t																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47165213	47165213	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	37	365	1	ENST00000409792.3:c.913delA	p.Thr305GlnfsTer35	p.T305Qfs*35	ENST00000409792	NM_014159.6	305	Aca/ca																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148511094	148511094	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	33	328	0	ENST00000320356.2:c.1808del	p.Asn603MetfsTer72	p.N603Mfs*72	ENST00000320356	NM_004456.4	603	aAt/at																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139413073	139413075	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	34	449	0	ENST00000277541.6:c.1067_1069delCCT	p.Ser356del	p.S356del	ENST00000277541	NM_017617.3	356	tCCTtc/ttc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108160451	108160451	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			311	36	435	0	ENST00000278616.4:c.4363del	p.Ser1455ValfsTer3	p.S1455Vfs*3	ENST00000278616	NM_000051.3	1453	atA/at																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245574	46245576	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	28	373	0	ENST00000334344.6:c.3670_3672del	p.Pro1224del	p.P1224del	ENST00000334344	NM_152641.2	1223	tCTCct/tct																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220672	1220674	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	24	487	0	ENST00000326873.7:c.692_694del	p.Phe231del	p.F231del	ENST00000326873	NM_000455.4	230	acCTTc/acc																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15350213	15350213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001614-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	17	521	0	ENST00000263377.2:c.3566C>T	p.Ala1189Val	p.A1189V	ENST00000263377	NM_058243.2	1189	gCg/gTg																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	127	284	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925316	114925317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A	rs769592153		P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	543	322	10	ENST00000543371.1:c.1403dup	p.Cys469ValfsTer8	p.C469Vfs*8	ENST00000543371	NM_001198531.1	465	aga/agAa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170862	112170862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	85	278	0	ENST00000257430.4:c.1958G>A	p.Arg653Lys	p.R653K	ENST00000257430	NM_000038.5	653	aGg/aAg																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123197716	123197716	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	141	342	2	ENST00000218089.9:c.1840C>T	p.Arg614Ter	p.R614*	ENST00000218089	NM_001042749.1	614	Cga/Tga																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63554725	63554726	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	135	133	0	ENST00000307078.5:c.13_14delAT	p.Met5ValfsTer14	p.M5Vfs*14	ENST00000307078	NM_004655.3	5	ATg/g																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133233793	133233794	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	346	354	0	ENST00000320574.5:c.3510dup	p.Leu1171ThrfsTer6	p.L1171Tfs*6	ENST00000320574	NM_006231.2	1170	-/A																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175363	112175366	+	stop_gained	Nonsense_Mutation	ONP	GCGA	GCGA	TCGT			P-0006861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	80	188	0	ENST00000257430.4:c.4072_4075delinsTCGT	p.Ala1358_Lys1359delinsSerTer	p.A1358_K1359delinsS*	ENST00000257430	NM_000038.5	1358	GCGAaa/TCGTaa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	151	484	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	74	265	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47143034	47143034	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1256	175	580	0	ENST00000409792.3:c.4929C>G	p.Asn1643Lys	p.N1643K	ENST00000409792	NM_014159.6	1643	aaC/aaG																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33289641	33289641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	120	475	0	ENST00000374542.5:c.62A>G	p.Gln21Arg	p.Q21R	ENST00000374542	NM_001141970.1	21	cAg/cGg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108224604	108224604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	110	446	0	ENST00000278616.4:c.8783G>A	p.Arg2928Lys	p.R2928K	ENST00000278616	NM_000051.3	2928	aGa/aAa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023844	27023845	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	88	424	0	ENST00000324856.7:c.951dup	p.Gly318TrpfsTer82	p.G318Wfs*82	ENST00000324856	NM_006015.4	317	agt/agTt																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0003002-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	258	548	0	ENST00000346208.3:c.1220_1221insA	p.Pro408AlafsTer99	p.P408Afs*99	ENST00000346208		407	tcg/tcAg																																												NEWRECORD																																		
PAX5	0	MSKCC	GRCh37	9	37015010	37015010	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003002-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	62	457	0	ENST00000358127.4:c.394G>A	p.Val132Ile	p.V132I	ENST00000358127	NM_001280556.1	132	Gtc/Atc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	33	402	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881001	37881002	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGCTCCCC			P-0006720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	30	386	1	ENST00000269571.5:c.2331_2339dupGGGCTCCCC	p.Gly778_Pro780dup	p.G778_P780dup	ENST00000269571		778	gtg/gtGGGCTCCCCg																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252884	36252885	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	339	224	0	ENST00000300305.3:c.477dup	p.Asp160Ter	p.D160*	ENST00000300305		159	-/T																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	22	108	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	27	325	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149512376	149512376	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	47	512	1	ENST00000261799.4:c.1064G>A	p.Arg355His	p.R355H	ENST00000261799	NM_002609.3	355	cGc/cAc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49416600	49416600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	39	400	0	ENST00000301067.7:c.16111G>A	p.Glu5371Lys	p.E5371K	ENST00000301067	NM_003482.3	5371	Gag/Aag																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78796085	78796085	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	53	451	1	ENST00000306801.3:c.975G>C	p.Trp325Cys	p.W325C	ENST00000306801	NM_020761.2	325	tgG/tgC																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78796958	78796958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	53	570	1	ENST00000306801.3:c.1071G>A	p.Met357Ile	p.M357I	ENST00000306801	NM_020761.2	357	atG/atA																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52678783	52678784	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0003429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	61	537	0	ENST00000394830.3:c.835dupA	p.Ile279AsnfsTer8	p.I279Nfs*8	ENST00000394830	NM_018313.4	279	ata/aAta																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	313	504	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	379	508	1	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3788651	3788651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	107	391	0	ENST00000262367.5:c.4303G>A	p.Asp1435Asn	p.D1435N	ENST00000262367	NM_004380.2	1435	Gat/Aat																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143045784	143045784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	273	427	0	ENST00000262992.4:c.1850G>T	p.Cys617Phe	p.C617F	ENST00000262992	NM_001101669.1	617	tGt/tTt																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38287220	38287220	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	474	493	0	ENST00000425967.3:c.437A>T	p.Tyr146Phe	p.Y146F	ENST00000425967	NM_001174067.1	146	tAc/tTc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108158420	108158420	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	204	316	0	ENST00000278616.4:c.4087A>T	p.Thr1363Ser	p.T1363S	ENST00000278616	NM_000051.3	1363	Act/Tct																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67457264	67457264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	253	339	0	ENST00000327367.4:c.238C>T	p.Arg80Trp	p.R80W	ENST00000327367	NM_005902.3	80	Cgg/Tgg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11143985	11143985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	297	417	0	ENST00000344626.4:c.3566G>T	p.Arg1189Leu	p.R1189L	ENST00000344626	NM_003072.3	1189	cGa/cTa																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17940951	17940951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	32	409	0	ENST00000458235.1:c.3173A>G	p.Gln1058Arg	p.Q1058R	ENST00000458235	NM_000215.3	1058	cAg/cGg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40770610	40770610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	205	385	0	ENST00000373198.4:c.2772C>A	p.Asp924Glu	p.D924E	ENST00000373198	NM_133170.3	924	gaC/gaA																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53222235	53222235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	114	418	0	ENST00000375401.3:c.4597A>G	p.Thr1533Ala	p.T1533A	ENST00000375401	NM_004187.3	1533	Act/Gct																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49030464	49030465	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TTTCA			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	206	338	0	ENST00000267163.4:c.1940_1944dup	p.Leu649PhefsTer11	p.L649Ffs*11	ENST00000267163	NM_000321.2	647	ctt/cTTTCAtt																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45374988	45374989	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0002956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	238	403	0	ENST00000262160.6:c.854_855delinsTT	p.Arg285Ile	p.R285I	ENST00000262160	NM_005901.5	285	aGG/aTT																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175696	112175696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	33	498	1	ENST00000257430.4:c.4405C>T	p.Gln1469Ter	p.Q1469*	ENST00000257430	NM_000038.5	1469	Caa/Taa																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135781005	135781006	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T	rs118203603		P-0013287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	164	1244	0	ENST00000298552.3:c.1959dup	p.Gln654ThrfsTer34	p.Q654Tfs*34	ENST00000298552	NM_001162426.1	653	-/A																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	73	338	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591085	67591085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	72	388	0	ENST00000274335.5:c.1678G>T	p.Asp560Tyr	p.D560Y	ENST00000274335		560	Gac/Tac																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27057991	27057992	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0004736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	28	345	0	ENST00000324856.7:c.1700_1701dup	p.Pro568SerfsTer52	p.P568Sfs*52	ENST00000324856	NM_006015.4	567	cag/cAGag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105693	27105694	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0004736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	31	489	0	ENST00000324856.7:c.5305_5306del	p.Leu1769ArgfsTer3	p.L1769Rfs*3	ENST00000324856	NM_006015.4	1768	ctTCta/ctta																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170777	112170780	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0004736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	48	557	0	ENST00000257430.4:c.1875_1878del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	625	CAGAca/ca																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139396746	139396746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			203	69	178	0	ENST00000277541.6:c.5362G>A	p.Gly1788Ser	p.G1788S	ENST00000277541	NM_017617.3	1788	Ggc/Agc																																												NEWRECORD																																		
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			428	155	372	1	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40710578	40710578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			485	167	309	0	ENST00000373198.4:c.4273G>A	p.Val1425Met	p.V1425M	ENST00000373198	NM_133170.3	1425	Gtg/Atg																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			443	64	228	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			330	59	157	1	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			370	111	227	2	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			532	142	279	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			543	29	294	0	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			473	179	345	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			820	266	458	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																												NEWRECORD																																		
FBXW7	55294	MSKCC	GRCh37	4	153244091	153244091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			819	265	443	1	ENST00000281708.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000281708	NM_033632.3	689	cGg/cAg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16261155	16261155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			240	55	181	0	ENST00000375759.3:c.8420G>A	p.Arg2807His	p.R2807H	ENST00000375759	NM_015001.2	2807	cGt/cAt																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46743773	46743773	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs111408489		P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			523	169	368	0	ENST00000371975.4:c.2063G>A	p.Arg688His	p.R688H	ENST00000371975	NM_003579.3	688	cGt/cAt																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30691954	30691954	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			561	146	201	0	ENST00000359013.4:c.529+2T>C		p.X177_splice	ENST00000359013	NM_001024847.2	177																																													NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30713721	30713721	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			493	79	252	0	ENST00000359013.4:c.1121A>T	p.Lys374Met	p.K374M	ENST00000359013	NM_001024847.2	374	aAg/aTg																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30732996	30732996	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934869		P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			578	201	332	0	ENST00000359013.4:c.1684C>T	p.Arg562Cys	p.R562C	ENST00000359013	NM_001024847.2	562	Cgc/Tgc																																												NEWRECORD																																		
GATA2	0	MSKCC	GRCh37	3	128200744	128200744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			395	133	363	0	ENST00000341105.2:c.1061C>T	p.Thr354Met	p.T354M	ENST00000341105	NM_032638.4	354	aCg/aTg																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185198307	185198307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			458	140	266	1	ENST00000265026.3:c.2789G>A	p.Arg930His	p.R930H	ENST00000265026	NM_004721.4	930	cGt/cAt																																												NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187443313	187443313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			457	147	266	0	ENST00000232014.4:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000232014	NM_001130845.1	605	Gaa/Aaa																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55964925	55964925	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149745504		P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			741	167	410	0	ENST00000263923.4:c.2312C>T	p.Thr771Met	p.T771M	ENST00000263923	NM_002253.2	771	aCg/aTg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187630299	187630299	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			716	121	396	0	ENST00000441802.2:c.683G>C	p.Gly228Ala	p.G228A	ENST00000441802	NM_005245.3	228	gGc/gCc																																												NEWRECORD																																		
RASA1	0	MSKCC	GRCh37	5	86667971	86667971	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			792	214	434	0	ENST00000274376.6:c.1735C>T	p.Arg579Trp	p.R579W	ENST00000274376	NM_002890.2	579	Cgg/Tgg																																												NEWRECORD																																		
HIST1H1C	0	MSKCC	GRCh37	6	26056232	26056232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			605	564	477	0	ENST00000343677.2:c.425C>T	p.Ala142Val	p.A142V	ENST00000343677	NM_005319.3	142	gCt/gTt																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117710594	117710594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138412232		P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			608	197	358	0	ENST00000368508.3:c.1678C>T	p.Arg560Cys	p.R560C	ENST00000368508	NM_002944.2	560	Cgc/Tgc																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152332923	152332923	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			535	130	334	0	ENST00000206249.3:c.1229T>C	p.Leu410Ser	p.L410S	ENST00000206249	NM_000125.3	410	tTg/tCg																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2987337	2987337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			727	111	400	0	ENST00000396946.4:c.92A>G	p.His31Arg	p.H31R	ENST00000396946	NM_032415.4	31	cAc/cGc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860742	151860742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			720	106	339	0	ENST00000262189.6:c.9920T>C	p.Val3307Ala	p.V3307A	ENST00000262189	NM_170606.2	3307	gTg/gCg																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145739599	145739599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			346	121	285	0	ENST00000428558.2:c.1852C>T	p.Arg618Trp	p.R618W	ENST00000428558	NM_004260.3	618	Cgg/Tgg																																												NEWRECORD																																		
CD274	0	MSKCC	GRCh37	9	5457418	5457418	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			420	24	148	0	ENST00000381577.3:c.392A>G	p.Asn131Ser	p.N131S	ENST00000381577	NM_014143.3	131	aAt/aGt																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98231290	98231290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			562	87	353	0	ENST00000331920.6:c.1993C>T	p.Arg665Cys	p.R665C	ENST00000331920	NM_000264.3	665	Cgc/Tgc																																												NEWRECORD																																		
TGFBR1	0	MSKCC	GRCh37	9	101894922	101894922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			814	243	505	0	ENST00000374994.4:c.475C>T	p.Pro159Ser	p.P159S	ENST00000374994	NM_004612.2	159	Cca/Tca																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139401302	139401302	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80340744		P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			362	125	289	0	ENST00000277541.6:c.3767C>T	p.Pro1256Leu	p.P1256L	ENST00000277541	NM_017617.3	1256	cCg/cTg																																												NEWRECORD																																		
SUFU	0	MSKCC	GRCh37	10	104309821	104309821	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34406289		P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			551	160	321	0	ENST00000369902.3:c.412G>A	p.Ala138Thr	p.A138T	ENST00000369902	NM_016169.3	138	Gca/Aca																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49447841	49447841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			487	113	260	0	ENST00000301067.7:c.593C>T	p.Ala198Val	p.A198V	ENST00000301067	NM_003482.3	198	gCg/gTg																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133202870	133202870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			422	43	312	0	ENST00000320574.5:c.6364G>A	p.Val2122Met	p.V2122M	ENST00000320574	NM_006231.2	2122	Gtg/Atg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3900353	3900353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			658	95	412	0	ENST00000262367.5:c.743C>T	p.Pro248Leu	p.P248L	ENST00000262367	NM_004380.2	248	cCg/cTg																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7979640	7979640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			473	39	285	0	ENST00000319144.4:c.1385G>A	p.Gly462Asp	p.G462D	ENST00000319144	NM_001139.2	462	gGc/gAc																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15968211	15968211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			848	110	458	0	ENST00000268712.3:c.5074C>A	p.Pro1692Thr	p.P1692T	ENST00000268712	NM_006311.3	1692	Ccg/Acg																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627865	37627865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			675	206	478	0	ENST00000447079.4:c.1780G>A	p.Ala594Thr	p.A594T	ENST00000447079	NM_015083.1	594	Gct/Act																																												NEWRECORD																																		
RARA	0	MSKCC	GRCh37	17	38508290	38508290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			513	120	337	0	ENST00000254066.5:c.598C>A	p.Pro200Thr	p.P200T	ENST00000254066	NM_000964.3	200	Cct/Act																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47677757	47677757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			627	196	304	0	ENST00000347630.2:c.1108C>T	p.Arg370Cys	p.R370C	ENST00000347630	NM_001007230.1	370	Cgc/Tgc																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70118918	70118918	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			677	53	463	0	ENST00000245479.2:c.490C>T	p.Gln164Ter	p.Q164*	ENST00000245479	NM_000346.3	164	Cag/Tag																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119104	70119104	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			239	28	185	0	ENST00000245479.2:c.676G>T	p.Glu226Ter	p.E226*	ENST00000245479	NM_000346.3	226	Gag/Tag																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39629506	39629506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			792	270	331	0	ENST00000262039.4:c.2200G>A	p.Val734Met	p.V734M	ENST00000262039	NM_002647.2	734	Gtg/Atg																																												NEWRECORD																																		
SMAD2	0	MSKCC	GRCh37	18	45395736	45395736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			820	81	348	0	ENST00000262160.6:c.398G>A	p.Arg133His	p.R133H	ENST00000262160	NM_005901.5	133	cGc/cAc																																												NEWRECORD																																		
GNA11	0	MSKCC	GRCh37	19	3118948	3118948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			346	90	347	0	ENST00000078429.4:c.632C>T	p.Ser211Leu	p.S211L	ENST00000078429	NM_002067.2	211	tCg/tTg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15298764	15298764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			393	123	285	0	ENST00000263388.2:c.1534G>A	p.Ala512Thr	p.A512T	ENST00000263388	NM_000435.2	512	Gcc/Acc																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42795597	42795597	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142397024		P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			486	139	390	0	ENST00000575354.2:c.2677C>T	p.Pro893Ser	p.P893S	ENST00000575354	NM_015125.3	893	Ccc/Tcc																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24145550	24145550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			466	135	323	0	ENST00000263121.7:c.569G>A	p.Arg190Gln	p.R190Q	ENST00000263121	NM_003073.3	190	cGg/cAg																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30032822	30032822	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			749	100	382	0	ENST00000338641.4:c.197A>G	p.Tyr66Cys	p.Y66C	ENST00000338641	NM_000268.3	66	tAc/tGc																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123197725	123197725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			396	146	232	0	ENST00000218089.9:c.1849C>T	p.Arg617Trp	p.R617W	ENST00000218089	NM_001042749.1	617	Cgg/Tgg																																												NEWRECORD																																		
MYCN	0	MSKCC	GRCh37	2	16082314	16082314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			545	71	426	2	ENST00000281043.3:c.134delC	p.Pro45ArgfsTer86	p.P45Rfs*86	ENST00000281043	NM_005378.4	43	aCc/ac																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25523009	25523009	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			562	40	393	1	ENST00000264709.3:c.176delC	p.Pro59ArgfsTer13	p.P59Rfs*13	ENST00000264709	NM_175629.2	59	cCg/cg																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149728	202149728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			676	114	479	0	ENST00000358485.4:c.1173del	p.Ile392SerfsTer4	p.I392Sfs*4	ENST00000358485	NM_001080125.1	390	gCc/gc																																												NEWRECORD																																		
CARD11	84433	MSKCC	GRCh37	7	2968323	2968323	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs764030673		P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			364	63	276	0	ENST00000396946.4:c.1663del	p.Arg555GlyfsTer45	p.R555Gfs*45	ENST00000396946	NM_032415.4	555	Cgg/gg																																												NEWRECORD																																		
CDKN2B	0	MSKCC	GRCh37	9	22008941	22008943	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			568	75	375	0	ENST00000276925.6:c.10_12del	p.Glu4del	p.E4del	ENST00000276925	NM_004936.3	4	GAG/-																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56438175	56438176	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CA			P-0001685-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			630	201	407	0	ENST00000407977.2:c.816_817dup	p.Ala273ValfsTer147	p.A273Vfs*147	ENST00000407977		273	gcc/gTGcc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	39	500	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0014070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	25	612	3	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32914939	32914940	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0014070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	39	983	1	ENST00000380152.3:c.6450dup	p.Val2151SerfsTer25	p.V2151Sfs*25	ENST00000380152		2149	-/A																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248651	212248651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	20	630	0	ENST00000342788.4:c.3616C>A	p.Pro1206Thr	p.P1206T	ENST00000342788	NM_005235.2	1206	Cca/Aca																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52598172	52598172	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	28	655	0	ENST00000394830.3:c.3694del	p.Cys1232ValfsTer12	p.C1232Vfs*12	ENST00000394830	NM_018313.4	1232	Tgt/gt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	260	243	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0004647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	45	277	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt																																												NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0004647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	100	315	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49400033	49400033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	84	322	0	ENST00000418115.1:c.304G>A	p.Glu102Lys	p.E102K	ENST00000418115	NM_001664.2	102	Gaa/Aaa																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89156968	89156968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	45	229	0	ENST00000336596.2:c.70C>A	p.Pro24Thr	p.P24T	ENST00000336596	NM_005233.5	24	Ccg/Acg																																												NEWRECORD																																		
PIK3R1	5295	MSKCC	GRCh37	5	67593424	67593424	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs764019194		P-0004647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	42	144	0	ENST00000274335.5:c.2170C>T	p.Arg724Ter	p.R724*	ENST00000274335		724	Cga/Tga																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162864388	162864388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	77	230	0	ENST00000366898.1:c.125G>A	p.Arg42His	p.R42H	ENST00000366898	NM_004562.2	42	cGt/cAt																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729613	41729613	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	63	330	0	ENST00000242208.4:c.916C>T	p.Arg306Cys	p.R306C	ENST00000242208	NM_002192.2	306	Cgc/Tgc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333555	70333555	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150689919		P-0004647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	48	285	0	ENST00000373644.4:c.1460C>T	p.Ser487Leu	p.S487L	ENST00000373644	NM_030625.2	487	tCa/tTa																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56439984	56439985	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0004647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	172	228	0	ENST00000407977.2:c.607dup	p.Met203AsnfsTer56	p.M203Nfs*56	ENST00000407977		203	atg/aAtg																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	83	280	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	139	599	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212248371	212248371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	45	426	0	ENST00000342788.4:c.3896C>T	p.Pro1299Leu	p.P1299L	ENST00000342788	NM_005235.2	1299	cCa/cTa																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26032034	26032034	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	74	951	0	ENST00000244661.2:c.255C>G	p.Phe85Leu	p.F85L	ENST00000244661	NM_003537.3	85	ttC/ttG																																												NEWRECORD																																		
DNAJB1	0	MSKCC	GRCh37	19	14626871	14626871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	91	790	0	ENST00000254322.2:c.904C>T	p.Leu302Phe	p.L302F	ENST00000254322	NM_006145.1	302	Ctc/Ttc																																												NEWRECORD																																		
BRCA2	675	MSKCC	GRCh37	13	32914859	32914860	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	72	894	1	ENST00000380152.3:c.6373dup	p.Thr2125AsnfsTer4	p.T2125Nfs*4	ENST00000380152		2123	gaa/gAaa																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99434623	99434624	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0008169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	37	308	2	ENST00000268035.6:c.710_711delinsTT	p.Gly237Val	p.G237V	ENST00000268035	NM_000875.3	237	gGC/gTT																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	88	364	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105930	27105931	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G	rs758608743		P-0013939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	218	481	1	ENST00000324856.7:c.5548dup	p.Asp1850GlyfsTer4	p.D1850Gfs*4	ENST00000324856	NM_006015.4	1847	-/G																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1266	200	640	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692835	89692835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	51	171	0	ENST00000371953.3:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000371953	NM_000314.4	107	Gat/Tat																																												NEWRECORD																																		
SOX17	0	MSKCC	GRCh37	8	55371799	55371820	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGGCCGCGCTGGGCCCCGAG	GGCGGCCGCGCTGGGCCCCGAG	-			P-0013939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	49	109	0	ENST00000297316.4:c.499_520del	p.Leu167TrpfsTer213	p.L167Wfs*213	ENST00000297316	NM_022454.3	163	caGGCGGCCGCGCTGGGCCCCGAG/ca																																												NEWRECORD																																		
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	49	465	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115251172	115251172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	87	510	0	ENST00000369535.4:c.554C>T	p.Pro185Leu	p.P185L	ENST00000369535	NM_002524.4	185	cCa/cTa																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38945793	38945793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	18	342	0	ENST00000357387.3:c.4433A>G	p.Asn1478Ser	p.N1478S	ENST00000357387	NM_152756.3	1478	aAt/aGt																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162394431	162394431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	42	436	0	ENST00000366898.1:c.637G>A	p.Gly213Arg	p.G213R	ENST00000366898	NM_004562.2	213	Gga/Aga																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81335053	81335053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	38	313	0	ENST00000222390.5:c.1774G>T	p.Asp592Tyr	p.D592Y	ENST00000222390	NM_000601.4	592	Gat/Tat																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110437037	110437037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	22	30	0	ENST00000375856.3:c.1364G>T	p.Gly455Val	p.G455V	ENST00000375856	NM_003749.2	455	gGc/gTc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9943776	9943776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	54	254	1	ENST00000330684.3:c.1165G>A	p.Val389Met	p.V389M	ENST00000330684	NM_001134407.1	389	Gtg/Atg																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89839741	89839741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	83	525	0	ENST00000389301.3:c.1952G>T	p.Gly651Val	p.G651V	ENST00000389301	NM_000135.2	651	gGa/gTa																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7126606	7126606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	115	358	0	ENST00000302850.5:c.3002G>T	p.Ser1001Ile	p.S1001I	ENST00000302850	NM_000208.2	1001	aGt/aTt																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57470699	57470699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	103	325	0	ENST00000371085.3:c.172A>G	p.Lys58Glu	p.K58E	ENST00000371085	NM_000516.4	58	Aag/Gag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Ins	INS	C	C	AA			P-0008935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	146	492	0	ENST00000269305.4:c.880delinsTT	p.Glu294LeufsTer12	p.E294Lfs*12	ENST00000269305	NM_001126112.2	294	Gag/TTag																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99154374	99154374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	74	363	1	ENST00000074304.5:c.516G>T	p.Gln172His	p.Q172H	ENST00000074304	NM_001134224.1	172	caG/caT																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	247	196	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
PHOX2B	0	MSKCC	GRCh37	4	41748240	41748240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	84	432	0	ENST00000226382.2:c.529G>A	p.Asp177Asn	p.D177N	ENST00000226382	NM_003924.3	177	Gac/Aac																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55129887	55129887	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	145	488	0	ENST00000257290.5:c.421G>C	p.Glu141Gln	p.E141Q	ENST00000257290	NM_006206.4	141	Gag/Cag																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187530453	187530453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	64	309	0	ENST00000441802.2:c.10090G>A	p.Gly3364Arg	p.G3364R	ENST00000441802	NM_005245.3	3364	Gga/Aga																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151849867	151849867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	54	300	1	ENST00000262189.6:c.12449G>A	p.Gly4150Glu	p.G4150E	ENST00000262189	NM_170606.2	4150	gGa/gAa																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38283765	38283765	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	47	305	0	ENST00000425967.3:c.715-2A>C		p.X239_splice	ENST00000425967	NM_001174067.1	239																																													NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70405851	70405851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	216	471	0	ENST00000373644.4:c.3365C>A	p.Thr1122Lys	p.T1122K	ENST00000373644	NM_030625.2	1122	aCa/aAa																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102195866	102195866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	189	649	2	ENST00000263464.3:c.626G>T	p.Gly209Val	p.G209V	ENST00000263464	NM_001165.4	209	gGt/gTt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118375222	118375222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	69	372	1	ENST00000534358.1:c.8615C>T	p.Ser2872Leu	p.S2872L	ENST00000534358	NM_005933.3	2872	tCa/tTa																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95566158	95566158	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	45	292	0	ENST00000343455.3:c.4165C>G	p.Gln1389Glu	p.Q1389E	ENST00000343455	NM_177438.2	1389	Caa/Gaa																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42000025	42000025	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1223	192	647	0	ENST00000219905.7:c.2288G>A	p.Trp763Ter	p.W763*	ENST00000219905	NM_001164273.1	763	tGg/tAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578531	7578531	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	112	318	0	ENST00000269305.4:c.399G>T	p.Met133Ile	p.M133I	ENST00000269305	NM_001126112.2	133	atG/atT																																												NEWRECORD																																		
SRSF2	0	MSKCC	GRCh37	17	74733038	74733038	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	202	444	0	ENST00000359995.5:c.205G>C	p.Glu69Gln	p.E69Q	ENST00000359995	NM_001195427.1	69	Gag/Cag																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2208953	2208953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	104	463	0	ENST00000398665.3:c.983G>T	p.Ser328Ile	p.S328I	ENST00000398665	NM_032482.2	328	aGt/aTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578526	7578527	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	109	319	0	ENST00000269305.4:c.403dupT	p.Cys135LeufsTer14	p.C135Lfs*14	ENST00000269305	NM_001126112.2	135	tgc/tTgc																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971180	21971180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	27	74	0	ENST00000304494.5:c.178delG	p.Ala60ArgfsTer86	p.A60Rfs*86	ENST00000304494	NM_000077.4	60	Gcg/cg																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971180	21971180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	27	74	0	ENST00000304494.5:c.178delG	p.Ala60ArgfsTer86	p.A60Rfs*86	ENST00000304494	NM_000077.4	60	Gcg/cg																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971180	21971180	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	27	74	0	ENST00000304494.5:c.178delG	p.Ala60ArgfsTer86	p.A60Rfs*86	ENST00000304494	NM_000077.4	60	Gcg/cg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	85	302	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	33	185	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0013014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	72	458	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711875	89711875	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	166	342	0	ENST00000371953.3:c.493G>A	p.Gly165Arg	p.G165R	ENST00000371953	NM_000314.4	165	Gga/Aga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173928	112173928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	79	353	0	ENST00000257430.4:c.2637G>C	p.Gln879His	p.Q879H	ENST00000257430	NM_000038.5	879	caG/caC																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39537648	39537648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	105	516	1	ENST00000262039.4:c.182G>A	p.Cys61Tyr	p.C61Y	ENST00000262039	NM_002647.2	61	tGt/tAt																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70339328	70339328	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	112	433	0	ENST00000374080.3:c.204+1G>T		p.X68_splice	ENST00000374080		68																																													NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591117	67591118	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0013014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	33	313	0	ENST00000274335.5:c.1711_1712del	p.Ile571ProfsTer30	p.I571Pfs*30	ENST00000274335		570	ctTAtc/cttc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27102119	27102120	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCTCT			P-0013014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	115	724	0	ENST00000324856.7:c.5045_5046insTCTCT	p.Glu1683LeufsTer2	p.E1683Lfs*2	ENST00000324856	NM_006015.4	1682	gca/gcTCTCTa																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591153	67591154	+	splice_donor_variant	Splice_Site	DEL	GT	GT	C			P-0013014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	75	309	0	ENST00000274335.5:c.1745+1_1745+2delinsC		p.X582_splice	ENST00000274335		582																																													NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52610694	52610694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	501	498	0	ENST00000394830.3:c.3479G>A	p.Arg1160Gln	p.R1160Q	ENST00000394830	NM_018313.4	1160	cGa/cAa																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110438345	110438345	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	15	58	0	ENST00000375856.3:c.56A>C	p.Asn19Thr	p.N19T	ENST00000375856	NM_003749.2	19	aAc/aCc																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	347924	347924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	329	662	0	ENST00000262320.3:c.1582G>A	p.Gly528Ser	p.G528S	ENST00000262320	NM_003502.3	528	Ggc/Agc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591118	67591129	+	inframe_deletion	In_Frame_Del	DEL	ATCCAGCTGAGA	ATCCAGCTGAGA	-			P-0008207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	138	376	0	ENST00000274335.5:c.1712_1723del	p.Ile571_Arg574del	p.I571_R574del	ENST00000274335		571	ATCCAGCTGAGA/-																																												NEWRECORD																																		
PGR	0	MSKCC	GRCh37	11	100998514	100998515	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0008207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	242	513	0	ENST00000325455.5:c.1287dup	p.Thr430AspfsTer144	p.T430Dfs*144	ENST00000325455	NM_001202474.3	429	-/G																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249009	55249010	+	inframe_insertion	In_Frame_Ins	INS	-	-	GACAACCCC			P-0008207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	346	428	0	ENST00000275493.2:c.2308_2316dup	p.Asp770_Pro772dup	p.D770_P772dup	ENST00000275493	NM_005228.3	770	-/GACAACCCC																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64575521	64575521	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	411	810	2	ENST00000337652.1:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000337652	NM_130803.2	171	Cag/Tag																																												NEWRECORD																																		
DAXX	0	MSKCC	GRCh37	6	33286531	33286532	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	103	448	0	ENST00000374542.5:c.2211dup	p.Asp738ArgfsTer3	p.D738Rfs*3	ENST00000374542	NM_001141970.1	737	-/A																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108165665	108165665	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	202	549	0	ENST00000278616.4:c.4791del	p.Leu1598SerfsTer3	p.L1598Sfs*3	ENST00000278616	NM_000051.3	1596	caT/ca																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115118716	115118717	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0013385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	331	622	0	ENST00000257566.3:c.624dup	p.Leu209ThrfsTer18	p.L209Tfs*18	ENST00000257566	NM_016569.3	208	-/A																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	108	258	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112175951	112175952	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0012933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	48	179	0	ENST00000257430.4:c.4666dup	p.Thr1556AsnfsTer3	p.T1556Nfs*3	ENST00000257430	NM_000038.5	1554	gaa/gAaa																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553257	106553257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	208	441	1	ENST00000369096.4:c.1222G>A	p.Ala408Thr	p.A408T	ENST00000369096	NM_001198.3	408	Gct/Act																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0012933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	197	414	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	45	117	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8471048	8471048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	91	329	0	ENST00000356435.5:c.3451C>T	p.Arg1151Cys	p.R1151C	ENST00000356435		1151	Cgc/Tgc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	171	330	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	218	395	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1806092	1806092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	419	654	3	ENST00000260795.2:c.1111A>T	p.Ser371Cys	p.S371C	ENST00000260795		371	Agt/Tgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	238	345	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	387	639	1	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac																																												NEWRECORD																																		
CDKN1A	1026	MSKCC	GRCh37	6	36652225	36652226	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0012205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	247	397	0	ENST00000244741.5:c.349dup	p.Cys117LeufsTer12	p.C117Lfs*12	ENST00000244741	NM_000389.4	116	tct/tcTt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27105736	27105736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	263	439	0	ENST00000324856.7:c.5347G>T	p.Glu1783Ter	p.E1783*	ENST00000324856	NM_006015.4	1783	Gaa/Taa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27106621	27106621	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	326	508	2	ENST00000324856.7:c.6232G>A	p.Glu2078Lys	p.E2078K	ENST00000324856	NM_006015.4	2078	Gag/Aag																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3817820	3817820	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	438	804	4	ENST00000262367.5:c.3151A>T	p.Lys1051Ter	p.K1051*	ENST00000262367	NM_004380.2	1051	Aag/Tag																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89349958	89349958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	610	1147	0	ENST00000301030.4:c.2992G>C	p.Glu998Gln	p.E998Q	ENST00000301030	NM_001256183.1	998	Gag/Cag																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44918259	44918259	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	212	170	0	ENST00000377967.4:c.884C>G	p.Ser295Ter	p.S295*	ENST00000377967	NM_021140.2	295	tCa/tGa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	82	315	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56155582	56155583	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GAATCAC			P-0003641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	74	229	0	ENST00000399503.3:c.675_681dup	p.Leu228GlufsTer6	p.L228Efs*6	ENST00000399503	NM_005921.1	225	atg/atGAATCACg																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56179388	56179389	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	T			P-0003641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	88	282	0	ENST00000399503.3:c.3701_3702delinsT	p.Lys1234IlefsTer11	p.K1234Ifs*11	ENST00000399503	NM_005921.1	1234	aAA/aT																																												NEWRECORD																																		
ARAF	369	MSKCC	GRCh37	X	47426415	47426415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	83	385	0	ENST00000377045.4:c.763del	p.Arg255GlyfsTer37	p.R255Gfs*37	ENST00000377045	NM_001654.4	253	aCc/ac																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	142	738	12	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15308382	15308383	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1008	114	1232	1	ENST00000263388.2:c.125dup	p.Cys43LeufsTer32	p.C43Lfs*32	ENST00000263388	NM_000435.2	42	cct/ccCt																																												NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41743933	41743933	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1223	159	1363	1	ENST00000301178.4:c.874del	p.His292IlefsTer5	p.H292Ifs*5	ENST00000301178	NM_021913.4	290	Ccc/cc																																												NEWRECORD																																		
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			800	128	966	4	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc																																												NEWRECORD																																		
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	111	563	5	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2217783	2217783	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			880	125	1052	0	ENST00000398665.3:c.2557C>T	p.Arg853Cys	p.R853C	ENST00000398665	NM_032482.2	853	Cgc/Tgc																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30691807	30691807	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	54	729	0	ENST00000359013.4:c.387del	p.Lys130SerfsTer19	p.K130Sfs*19	ENST00000359013	NM_001024847.2	128	gaC/ga																																												NEWRECORD																																		
HIST1H3E	0	MSKCC	GRCh37	6	26225507	26225507	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	57	374	0	ENST00000360408.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000360408	NM_003532.2	42	tAc/tGc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101417	27101417	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	110	808	0	ENST00000324856.7:c.4703delC	p.Pro1568LeufsTer44	p.P1568Lfs*44	ENST00000324856	NM_006015.4	1567	Ccc/cc																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152420067	152420067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141662120		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	25	468	0	ENST00000206249.3:c.1754C>T	p.Thr585Met	p.T585M	ENST00000206249	NM_000125.3	585	aCg/aTg																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128016909	128016909	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	86	692	1	ENST00000285398.2:c.2180A>T	p.Glu727Val	p.E727V	ENST00000285398	NM_000122.1	727	gAg/gTg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117681120	117681120	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			231	32	536	0	ENST00000368508.3:c.3500delT	p.Leu1167Ter	p.L1167*	ENST00000368508	NM_002944.2	1167	tTa/ta																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258556	16258556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	75	627	0	ENST00000375759.3:c.5821G>A	p.Ala1941Thr	p.A1941T	ENST00000375759	NM_015001.2	1941	Gct/Act																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101501	27101501	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	111	1233	0	ENST00000324856.7:c.4783A>G	p.Met1595Val	p.M1595V	ENST00000324856	NM_006015.4	1595	Atg/Gtg																																												NEWRECORD																																		
MUTYH	0	MSKCC	GRCh37	1	45805891	45805891	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	102	810	0	ENST00000372115.3:c.36G>T	p.Trp12Cys	p.W12C	ENST00000372115	NM_001048171.1	12	tgG/tgT																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65305457	65305457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	34	453	1	ENST00000342505.4:c.2671C>T	p.Leu891Phe	p.L891F	ENST00000342505	NM_002227.2	891	Ctc/Ttc																																												NEWRECORD																																		
FAM46C	0	MSKCC	GRCh37	1	118166443	118166443	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	33	314	0	ENST00000369448.3:c.953C>T	p.Thr318Ile	p.T318I	ENST00000369448	NM_017709.3	318	aCc/aTc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120469220	120469220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	69	652	0	ENST00000256646.2:c.3907A>G	p.Thr1303Ala	p.T1303A	ENST00000256646	NM_024408.3	1303	Acc/Gcc																																												NEWRECORD																																		
RFWD2	0	MSKCC	GRCh37	1	175958564	175958564	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	16	647	0	ENST00000367669.3:c.1781T>C	p.Val594Ala	p.V594A	ENST00000367669	NM_022457.5	594	gTa/gCa																																												NEWRECORD																																		
SUFU	0	MSKCC	GRCh37	10	104375090	104375090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			636	74	721	1	ENST00000369902.3:c.1088C>T	p.Thr363Met	p.T363M	ENST00000369902	NM_016169.3	363	aCg/aTg																																												NEWRECORD																																		
INPPL1	0	MSKCC	GRCh37	11	71942053	71942053	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	112	1183	1	ENST00000298229.2:c.1322delA	p.Asn441ThrfsTer2	p.N441Tfs*2	ENST00000298229	NM_001567.3	439	ccA/cc																																												NEWRECORD																																		
INPPL1	0	MSKCC	GRCh37	11	71948259	71948259	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1130	161	1763	0	ENST00000298229.2:c.2974del	p.Val992SerfsTer139	p.V992Sfs*139	ENST00000298229	NM_001567.3	991	Ggg/gg																																												NEWRECORD																																		
H3F3C	0	MSKCC	GRCh37	12	31944943	31944943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	84	583	0	ENST00000340398.3:c.158G>A	p.Arg53His	p.R53H	ENST00000340398	NM_001013699.2	53	cGt/cAt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49448408	49448408	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	98	798	3	ENST00000301067.7:c.303del	p.Ser102AlafsTer28	p.S102Afs*28	ENST00000301067	NM_003482.3	101	ggG/gg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49449100	49449100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	81	612	2	ENST00000301067.7:c.8G>A	p.Ser3Asn	p.S3N	ENST00000301067	NM_003482.3	3	aGc/aAc																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56481648	56481648	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			735	120	880	0	ENST00000267101.3:c.683A>G	p.His228Arg	p.H228R	ENST00000267101	NM_001982.3	228	cAt/cGt																																												NEWRECORD																																		
CDK4	0	MSKCC	GRCh37	12	58144864	58144864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	47	531	2	ENST00000257904.6:c.364C>T	p.Arg122Cys	p.R122C	ENST00000257904	NM_000075.3	122	Cgc/Tgc																																												NEWRECORD																																		
MSI1	0	MSKCC	GRCh37	12	120794732	120794732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	102	851	1	ENST00000257552.2:c.625G>A	p.Ala209Thr	p.A209T	ENST00000257552	NM_002442.3	209	Gcc/Acc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133209345	133209345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			722	99	881	0	ENST00000320574.5:c.6041G>T	p.Gly2014Val	p.G2014V	ENST00000320574	NM_006231.2	2014	gGg/gTg																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28880897	28880897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	48	435	0	ENST00000282397.4:c.3733G>A	p.Asp1245Asn	p.D1245N	ENST00000282397	NM_002019.4	1245	Gac/Aac																																												NEWRECORD																																		
FOXO1	0	MSKCC	GRCh37	13	41134954	41134954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	22	334	0	ENST00000379561.5:c.674G>A	p.Arg225His	p.R225H	ENST00000379561	NM_002015.3	225	cGt/cAt																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48955484	48955484	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	14	395	0	ENST00000267163.4:c.1600A>C	p.Ser534Arg	p.S534R	ENST00000267163	NM_000321.2	534	Agt/Cgt																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103524654	103524654	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	54	538	0	ENST00000355739.4:c.2785A>G	p.Asn929Asp	p.N929D	ENST00000355739	NM_000123.3	929	Aac/Gac																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435652	110435652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1085	162	1287	4	ENST00000375856.3:c.2749G>A	p.Gly917Ser	p.G917S	ENST00000375856	NM_003749.2	917	Ggc/Agc																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110437412	110437412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			762	69	862	0	ENST00000375856.3:c.989A>G	p.Asn330Ser	p.N330S	ENST00000375856	NM_003749.2	330	aAc/aGc																																												NEWRECORD																																		
PRKD1	0	MSKCC	GRCh37	14	30194831	30194831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	41	774	1	ENST00000331968.5:c.314G>A	p.Arg105His	p.R105H	ENST00000331968	NM_002742.2	105	cGc/cAc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88670391	88670391	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	13	430	0	ENST00000360948.2:c.1293+2T>C		p.X431_splice	ENST00000360948	NM_001012338.2	431																																													NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99465390	99465390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	49	495	0	ENST00000268035.6:c.2215C>T	p.Arg739Trp	p.R739W	ENST00000268035	NM_000875.3	739	Cgg/Tgg																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	354308	354308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	44	720	0	ENST00000262320.3:c.1250G>A	p.Arg417His	p.R417H	ENST00000262320	NM_003502.3	417	cGc/cAc																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67132641	67132641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	39	721	0	ENST00000412916.2:c.524G>A	p.Gly175Asp	p.G175D	ENST00000412916		175	gGt/gAt																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89349156	89349156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	100	1436	1	ENST00000301030.4:c.3794C>T	p.Ser1265Phe	p.S1265F	ENST00000301030	NM_001256183.1	1265	tCc/tTc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56437578	56437578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	104	893	0	ENST00000407977.2:c.884A>G	p.His295Arg	p.H295R	ENST00000407977		295	cAt/cGt																																												NEWRECORD																																		
RNF43	54894	MSKCC	GRCh37	17	56492772	56492773	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	72	728	0	ENST00000407977.2:c.166dup	p.Asp56GlyfsTer19	p.D56Gfs*19	ENST00000407977		56	gac/gGac																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533914	63533914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	68	410	0	ENST00000307078.5:c.1240C>T	p.Arg414Trp	p.R414W	ENST00000307078	NM_004655.3	414	Cgg/Tgg																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1615812	1615812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	32	552	1	ENST00000344749.5:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000344749	NM_001136139.2	487	Cga/Tga																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2226751	2226751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	150	1256	6	ENST00000398665.3:c.4231G>A	p.Ala1411Thr	p.A1411T	ENST00000398665	NM_032482.2	1411	Gcc/Acc																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5221081	5221081	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199805837		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	58	690	0	ENST00000357368.4:c.3385G>A	p.Ala1129Thr	p.A1129T	ENST00000357368	NM_002850.3	1129	Gcc/Acc																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10262175	10262175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	67	829	1	ENST00000340748.4:c.2116G>A	p.Asp706Asn	p.D706N	ENST00000340748		706	Gat/Aat																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11129671	11129671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	86	900	1	ENST00000344626.4:c.2477C>T	p.Ala826Val	p.A826V	ENST00000344626	NM_003072.3	826	gCc/gTc																																												NEWRECORD																																		
UPF1	0	MSKCC	GRCh37	19	18964077	18964077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	52	595	0	ENST00000262803.5:c.1078del	p.Asp360MetfsTer46	p.D360Mfs*46	ENST00000262803	NM_002911.3	358	caG/ca																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50910381	50910381	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			877	118	1059	0	ENST00000440232.2:c.1636C>A	p.Leu546Met	p.L546M	ENST00000440232	NM_002691.3	546	Ctg/Atg																																												NEWRECORD																																		
POLD1	0	MSKCC	GRCh37	19	50910394	50910394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	116	1053	1	ENST00000440232.2:c.1649G>A	p.Gly550Asp	p.G550D	ENST00000440232	NM_002691.3	550	gGc/gAc																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25966526	25966526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	45	665	0	ENST00000435504.4:c.2680G>A	p.Ala894Thr	p.A894T	ENST00000435504		894	Gcc/Acc																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25991737	25991737	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	36	327	0	ENST00000435504.4:c.505G>A	p.Ala169Thr	p.A169T	ENST00000435504		169	Gcg/Acg																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47703590	47703590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	44	688	0	ENST00000233146.2:c.2090G>A	p.Cys697Tyr	p.C697Y	ENST00000233146	NM_000251.2	697	tGt/tAt																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99182601	99182601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	57	409	0	ENST00000074304.5:c.2404G>T	p.Gly802Cys	p.G802C	ENST00000074304	NM_001134224.1	802	Ggc/Tgc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212989623	212989623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	22	276	0	ENST00000342788.4:c.88G>A	p.Ala30Thr	p.A30T	ENST00000342788	NM_005235.2	30	Gca/Aca																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227661852	227661852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	115	1244	0	ENST00000305123.5:c.1603A>G	p.Thr535Ala	p.T535A	ENST00000305123	NM_005544.2	535	Acc/Gcc																																												NEWRECORD																																		
SMARCB1	0	MSKCC	GRCh37	22	24175871	24175871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	82	625	2	ENST00000263121.7:c.1099G>A	p.Asp367Asn	p.D367N	ENST00000263121	NM_003073.3	367	Gac/Aac																																												NEWRECORD																																		
MLH1	0	MSKCC	GRCh37	3	37038114	37038114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			53	18	116	0	ENST00000231790.2:c.121G>A	p.Asp41Asn	p.D41N	ENST00000231790	NM_000249.3	41	Gat/Aat																																												NEWRECORD																																		
MST1R	4486	MSKCC	GRCh37	3	49928978	49928978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs200454353		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	74	860	0	ENST00000296474.3:c.3388C>T	p.Arg1130Ter	p.R1130*	ENST00000296474	NM_002447.2	1130	Cga/Tga																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49940586	49940586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	31	793	0	ENST00000296474.3:c.457A>G	p.Thr153Ala	p.T153A	ENST00000296474	NM_002447.2	153	Aca/Gca																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52678753	52678753	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	47	509	0	ENST00000394830.3:c.866A>G	p.His289Arg	p.H289R	ENST00000394830	NM_018313.4	289	cAt/cGt																																												NEWRECORD																																		
MITF	0	MSKCC	GRCh37	3	69987043	69987043	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	71	846	0	ENST00000352241.4:c.425A>G	p.Tyr142Cys	p.Y142C	ENST00000352241	NM_198159.2	142	tAc/tGc																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134977886	134977886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			267	34	603	0	ENST00000398015.3:c.2879G>A	p.Gly960Asp	p.G960D	ENST00000398015	NM_004441.4	960	gGc/gAc																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178928065	178928065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	40	639	0	ENST00000263967.3:c.1343T>C	p.Val448Ala	p.V448A	ENST00000263967	NM_006218.2	448	gTa/gCa																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185191118	185191118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	65	617	1	ENST00000265026.3:c.1999G>A	p.Ala667Thr	p.A667T	ENST00000265026	NM_004721.4	667	Gcc/Acc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189604280	189604280	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	82	688	0	ENST00000264731.3:c.1447A>G	p.Asn483Asp	p.N483D	ENST00000264731	NM_003722.4	483	Aac/Gac																																												NEWRECORD																																		
MSH3	0	MSKCC	GRCh37	5	79974842	79974842	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			518	36	558	0	ENST00000265081.6:c.1270G>A	p.Val424Ile	p.V424I	ENST00000265081	NM_002439.4	424	Gta/Ata																																												NEWRECORD																																		
HLA-A	3105	MSKCC	GRCh37	6	29911141	29911141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	33	638	0	ENST00000376809.5:c.440A>G	p.Tyr147Cys	p.Y147C	ENST00000376809	NM_002116.7	147	tAc/tGc																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41730120	41730120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	28	373	0	ENST00000242208.4:c.409C>T	p.His137Tyr	p.H137Y	ENST00000242208	NM_002192.2	137	Cac/Tac																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50367272	50367272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	58	503	0	ENST00000331340.3:c.79G>T	p.Gly27Cys	p.G27C	ENST00000331340	NM_006060.4	27	Ggc/Tgc																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50455067	50455067	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	42	347	0	ENST00000331340.3:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000331340	NM_006060.4	205	tAt/tTt																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55214332	55214332	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	82	742	0	ENST00000275493.2:c.458A>G	p.Asn153Ser	p.N153S	ENST00000275493	NM_005228.3	153	aAc/aGc																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148506217	148506217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	52	721	0	ENST00000320356.2:c.2141G>A	p.Gly714Asp	p.G714D	ENST00000320356	NM_004456.4	714	gGt/gAt																																												NEWRECORD																																		
PREX2	80243	MSKCC	GRCh37	8	68992721	68992721	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs764112302		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	43	816	2	ENST00000288368.4:c.1693del	p.Ser565ArgfsTer10	p.S565Rfs*10	ENST00000288368	NM_024870.2	562	cgT/cg																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	69002849	69002849	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	30	350	0	ENST00000288368.4:c.2149C>T	p.Gln717Ter	p.Q717*	ENST00000288368	NM_024870.2	717	Cag/Tag																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145737081	145737081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	60	707	2	ENST00000428558.2:c.3485G>A	p.Arg1162His	p.R1162H	ENST00000428558	NM_004260.3	1162	cGc/cAc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8436642	8436642	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			209	27	575	0	ENST00000356435.5:c.4036A>G	p.Ile1346Val	p.I1346V	ENST00000356435		1346	Att/Gtt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	26	271	1	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974782	21974782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs138677674		P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			183	26	271	1	ENST00000304494.5:c.45G>A	p.Trp15Ter	p.W15*	ENST00000304494	NM_000077.4	15	tgG/tgA																																												NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27180358	27180358	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	53	442	0	ENST00000380036.4:c.1022A>T	p.Glu341Val	p.E341V	ENST00000380036	NM_000459.3	341	gAg/gTg																																												NEWRECORD																																		
TEK	0	MSKCC	GRCh37	9	27190602	27190602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	70	918	0	ENST00000380036.4:c.1403A>G	p.Glu468Gly	p.E468G	ENST00000380036	NM_000459.3	468	gAg/gGg																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97912259	97912259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	50	640	1	ENST00000289081.3:c.632C>A	p.Pro211His	p.P211H	ENST00000289081	NM_000136.2	211	cCt/cAt																																												NEWRECORD																																		
KLF4	0	MSKCC	GRCh37	9	110250227	110250227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	79	857	0	ENST00000374672.4:c.448T>C	p.Phe150Leu	p.F150L	ENST00000374672	NM_004235.4	150	Ttc/Ctc																																												NEWRECORD																																		
RXRA	0	MSKCC	GRCh37	9	137321028	137321028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	109	1084	2	ENST00000481739.1:c.985G>A	p.Gly329Arg	p.G329R	ENST00000481739	NM_002957.4	329	Ggg/Agg																																												NEWRECORD																																		
ZRSR2	0	MSKCC	GRCh37	X	15841027	15841027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	81	509	0	ENST00000307771.7:c.1111G>A	p.Asp371Asn	p.D371N	ENST00000307771	NM_005089.3	371	Gac/Aac																																												NEWRECORD																																		
BCOR	54880	MSKCC	GRCh37	X	39933617	39933617	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			150	73	275	0	ENST00000378444.4:c.982del	p.Asp328ThrfsTer50	p.D328Tfs*50	ENST00000378444	NM_001123385.1	328	Gac/ac																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44937657	44937657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			94	30	287	0	ENST00000377967.4:c.2845C>T	p.Arg949Cys	p.R949C	ENST00000377967	NM_021140.2	949	Cgt/Tgt																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53243965	53243965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	123	588	0	ENST00000375401.3:c.1028A>G	p.Asp343Gly	p.D343G	ENST00000375401	NM_004187.3	343	gAt/gGt																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70360576	70360576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014258-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	163	570	0	ENST00000374080.3:c.6136G>A	p.Ala2046Thr	p.A2046T	ENST00000374080		2046	Gcc/Acc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	485	345	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	250	336	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151860143	151860143	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	101	380	4	ENST00000262189.6:c.10519C>T	p.Arg3507Ter	p.R3507*	ENST00000262189	NM_170606.2	3507	Cga/Tga																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11210189	11210189	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	96	430	0	ENST00000361445.4:c.4564G>A	p.Gly1522Ser	p.G1522S	ENST00000361445	NM_004958.3	1522	Ggt/Agt																																												NEWRECORD																																		
PIK3R3	0	MSKCC	GRCh37	1	46527726	46527726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	110	295	1	ENST00000262741.5:c.639G>T	p.Arg213Ser	p.R213S	ENST00000262741	NM_003629.3	213	agG/agT																																												NEWRECORD																																		
REL	0	MSKCC	GRCh37	2	61144075	61144075	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	122	574	0	ENST00000295025.8:c.458A>T	p.Gln153Leu	p.Q153L	ENST00000295025	NM_002908.2	153	cAa/cTa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187524584	187524584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	112	436	0	ENST00000441802.2:c.11096A>G	p.Glu3699Gly	p.E3699G	ENST00000441802	NM_005245.3	3699	gAg/gGg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187531125	187531125	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	97	434	2	ENST00000441802.2:c.9898G>T	p.Glu3300Ter	p.E3300*	ENST00000441802	NM_005245.3	3300	Gag/Tag																																												NEWRECORD																																		
SDHA	0	MSKCC	GRCh37	5	224620	224620	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	45	164	0	ENST00000264932.6:c.296A>G	p.His99Arg	p.H99R	ENST00000264932	NM_004168.2	99	cAc/cGc																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876457	35876457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	110	382	0	ENST00000303115.3:c.1249C>G	p.Pro417Ala	p.P417A	ENST00000303115	NM_002185.3	417	Cct/Gct																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140624481	140624481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	43	145	0	ENST00000288602.6:c.23G>T	p.Gly8Val	p.G8V	ENST00000288602	NM_004333.4	8	gGt/gTt																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64138116	64138116	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	89	342	0	ENST00000334205.4:c.2039G>T	p.Arg680Leu	p.R680L	ENST00000334205	NM_003942.2	680	cGc/cTc																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64577430	64577430	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	248	505	0	ENST00000337652.1:c.152A>T	p.Asn51Ile	p.N51I	ENST00000337652	NM_130803.2	51	aAc/aTc																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115109974	115109974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	102	409	1	ENST00000257566.3:c.1904G>T	p.Arg635Leu	p.R635L	ENST00000257566	NM_016569.3	635	cGc/cTc																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65544748	65544748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	164	311	0	ENST00000358664.4:c.178C>T	p.Arg60Trp	p.R60W	ENST00000358664	NM_002382.4	60	Cgg/Tgg																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42028571	42028571	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	404	801	0	ENST00000219905.7:c.4109G>C	p.Gly1370Ala	p.G1370A	ENST00000219905	NM_001164273.1	1370	gGc/gCc																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88420309	88420309	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	256	263	0	ENST00000360948.2:c.2377C>G	p.Arg793Gly	p.R793G	ENST00000360948	NM_001012338.2	793	Cga/Gga																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88678416	88678416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	818	689	0	ENST00000360948.2:c.1120G>T	p.Gly374Cys	p.G374C	ENST00000360948	NM_001012338.2	374	Ggc/Tgc																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	11984842	11984842	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	217	344	0	ENST00000353533.5:c.388G>T	p.Val130Phe	p.V130F	ENST00000353533	NM_003010.3	130	Gtt/Ttt																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10291118	10291118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	279	444	0	ENST00000340748.4:c.353G>T	p.Arg118Leu	p.R118L	ENST00000340748		118	cGt/cTt																																												NEWRECORD																																		
MEF2B	0	MSKCC	GRCh37	19	19260177	19260177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	274	447	0	ENST00000162023.5:c.116G>C	p.Cys39Ser	p.C39S	ENST00000162023		39	tGt/tCt																																												NEWRECORD																																		
XIAP	0	MSKCC	GRCh37	X	123019880	123019880	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	108	449	0	ENST00000355640.3:c.368G>T	p.Ser123Ile	p.S123I	ENST00000355640		123	aGc/aTc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164048	47164049	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	76	461	0	ENST00000409792.3:c.2077dup	p.Ala693GlyfsTer7	p.A693Gfs*7	ENST00000409792	NM_014159.6	693	gct/gGct																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509959	106509959	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	208	477	0	ENST00000359195.3:c.1954del	p.Glu652ArgfsTer16	p.E652Rfs*16	ENST00000359195	NM_002649.2	651	ttG/tt																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212578365	212578365	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	126	333	0	ENST00000342788.4:c.892del	p.Val298TrpfsTer2	p.V298Wfs*2	ENST00000342788	NM_005235.2	298	Gtg/tg																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57864689	57864690	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0006060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	272	661	0	ENST00000228682.2:c.2166_2167delinsTT	p.Met722_Asp723delinsIleTyr	p.M722_D723delinsIY	ENST00000228682	NM_005269.2	722	atGGac/atTTac																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	112	395	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	80	336	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99175929	99175929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	83	417	1	ENST00000074304.5:c.1841G>A	p.Cys614Tyr	p.C614Y	ENST00000074304	NM_001134224.1	614	tGc/tAc																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55968551	55968551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	82	434	0	ENST00000263923.4:c.2112T>A	p.Asn704Lys	p.N704K	ENST00000263923	NM_002253.2	704	aaT/aaA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578293	7578977	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTTGTATTTTTTTGTAGAGACGAGGTTTCATCATGTTACCCAGGCTGGTCTTGAACTCCTGGGCTCAGGTGATCTGCCTGCCTTGGCCTCTTTGAG	AGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTTGTATTTTTTTGTAGAGACGAGGTTTCATCATGTTACCCAGGCTGGTCTTGAACTCCTGGGCTCAGGTGATCTGCCTGCCTTGGCCTCTTTGAG	-			P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	138	383	0	ENST00000269305.4:c.375+335_560-4del		p.X125_splice	ENST00000269305	NM_001126112.2	125																																													NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411206	63411207	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	198	515	0	ENST00000330258.3:c.1960dup	p.Tyr654LeufsTer53	p.Y654Lfs*53	ENST00000330258	NM_152424.3	654	tat/tTat																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187534479	187534479	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	21	243	1	ENST00000441802.2:c.9247delA	p.Thr3083ProfsTer33	p.T3083Pfs*33	ENST00000441802	NM_005245.3	3083	Acc/cc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175607	112175608	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCCTCCA			P-0006230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	174	476	0	ENST00000257430.4:c.4319_4320insTCCATCC	p.Pro1442SerfsTer15	p.P1442Sfs*15	ENST00000257430	NM_000038.5	1439	cct/ccTCCTCCAt																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	29	454	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52643778	52643778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	63	421	0	ENST00000394830.3:c.2118G>T	p.Met706Ile	p.M706I	ENST00000394830	NM_018313.4	706	atG/atT																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2974095	2974095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	62	313	0	ENST00000396946.4:c.1510G>T	p.Gly504Cys	p.G504C	ENST00000396946	NM_032415.4	504	Ggc/Tgc																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2979403	2979403	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1088	84	502	0	ENST00000396946.4:c.844G>T	p.Glu282Ter	p.E282*	ENST00000396946	NM_032415.4	282	Gag/Tag																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81374362	81374362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	69	416	0	ENST00000222390.5:c.700C>A	p.Arg234Ser	p.R234S	ENST00000222390	NM_000601.4	234	Cgc/Agc																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57861236	57861236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1509	133	837	1	ENST00000228682.2:c.1033G>A	p.Ala345Thr	p.A345T	ENST00000228682	NM_005269.2	345	Gcc/Acc																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	347908	347908	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1561	142	969	2	ENST00000262320.3:c.1598G>T	p.Arg533Leu	p.R533L	ENST00000262320	NM_003502.3	533	cGa/cTa																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81969955	81969955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1168	127	697	2	ENST00000359376.3:c.3024G>T	p.Gln1008His	p.Q1008H	ENST00000359376	NM_002661.3	1008	caG/caT																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	125	398	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41246463	41246463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	87	567	0	ENST00000357654.3:c.1085A>G	p.Glu362Gly	p.E362G	ENST00000357654	NM_007294.3	362	gAg/gGg																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	90	501	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11138515	11138515	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	109	491	0	ENST00000344626.4:c.3271A>T	p.Lys1091Ter	p.K1091*	ENST00000344626	NM_003072.3	1091	Aaa/Taa																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412460	63412460	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	153	449	0	ENST00000330258.3:c.707G>C	p.Gly236Ala	p.G236A	ENST00000330258	NM_152424.3	236	gGg/gCg																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971083	21971084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	31	162	0	ENST00000304494.5:c.274dup	p.Asp92GlyfsTer28	p.D92Gfs*28	ENST00000304494	NM_000077.4	92	gac/gGac																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971083	21971084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	31	162	0	ENST00000304494.5:c.274dup	p.Asp92GlyfsTer28	p.D92Gfs*28	ENST00000304494	NM_000077.4	92	gac/gGac																																												NEWRECORD																																		
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971083	21971084	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	31	162	0	ENST00000304494.5:c.274dup	p.Asp92GlyfsTer28	p.D92Gfs*28	ENST00000304494	NM_000077.4	92	gac/gGac																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145738765	145738765	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	80	362	0	ENST00000428558.2:c.2299del	p.Val767TrpfsTer76	p.V767Wfs*76	ENST00000428558	NM_004260.3	767	Gtg/tg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10600352	10600355	+	frameshift_variant	Frame_Shift_Del	DEL	TGTG	TGTG	-			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	129	569	0	ENST00000171111.5:c.1500_1503del	p.Ile500MetfsTer3	p.I500Mfs*3	ENST00000171111	NM_203500.1	500	atCACA/at																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55974052	55974052	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	37	231	0	ENST00000263923.4:c.1264del	p.Gln422ArgfsTer7	p.Q422Rfs*7	ENST00000263923	NM_002253.2	422	Cag/ag																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	74	197	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa																																												NEWRECORD																																		
EGFL7	0	MSKCC	GRCh37	9	139566418	139566418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	23	169	0	ENST00000308874.7:c.677C>T	p.Ser226Leu	p.S226L	ENST00000308874		226	tCg/tTg																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39637900	39637900	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	168	302	0	ENST00000262039.4:c.2317C>G	p.Leu773Val	p.L773V	ENST00000262039	NM_002647.2	773	Ctt/Gtt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151845722	151845722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	158	326	0	ENST00000262189.6:c.13290G>C	p.Leu4430Phe	p.L4430F	ENST00000262189	NM_170606.2	4430	ttG/ttC																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46244682	46244682	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	198	316	0	ENST00000334344.6:c.2776G>C	p.Val926Leu	p.V926L	ENST00000334344	NM_152641.2	926	Gta/Cta																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	113	196	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag																																												NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1632358	1632358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	163	272	0	ENST00000344749.5:c.192G>C	p.Gln64His	p.Q64H	ENST00000344749	NM_001136139.2	64	caG/caC																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55249013	55249014	+	inframe_insertion	In_Frame_Ins	INS	-	-	ACCACC			P-0003863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	1193	235	0	ENST00000275493.2:c.2314_2315insACCACC	p.Asn771_Pro772insHisHis	p.N771_P772insHH	ENST00000275493	NM_005228.3	771	aac/aACCACCac																																												NEWRECORD																																		
ARID5B	0	MSKCC	GRCh37	10	63851663	63851664	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004231-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			643	82	449	0	ENST00000279873.7:c.2442dup	p.Glu815ArgfsTer12	p.E815Rfs*12	ENST00000279873	NM_032199.2	814	tta/ttAa																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190719268	190719268	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	224	296	1	ENST00000441310.2:c.1270G>T	p.Glu424Ter	p.E424*	ENST00000441310	NM_000534.4	424	Gaa/Taa																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185190937	185190937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	382	631	0	ENST00000265026.3:c.1818G>C	p.Leu606Phe	p.L606F	ENST00000265026	NM_004721.4	606	ttG/ttC																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56160601	56160601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	276	389	0	ENST00000399503.3:c.875C>T	p.Ser292Leu	p.S292L	ENST00000399503	NM_005921.1	292	tCa/tTa																																												NEWRECORD																																		
WT1	0	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	280	377	0	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108138048	108138048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	363	407	0	ENST00000278616.4:c.2617G>A	p.Gly873Arg	p.G873R	ENST00000278616	NM_000051.3	873	Gga/Aga																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15995373	15995373	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	64	374	0	ENST00000268712.3:c.2821-1G>T		p.X941_splice	ENST00000268712	NM_006311.3	941																																													NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48919262	48919301	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGTTGATAATGCTATGTCAAGACTGTTGAAGAAGTATG	AAAGTTGATAATGCTATGTCAAGACTGTTGAAGAAGTATG	-			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	244	328	0	ENST00000267163.4:c.428_467del	p.Lys143MetfsTer19	p.K143Mfs*19	ENST00000267163	NM_000321.2	143	AAAGTTGATAATGCTATGTCAAGACTGTTGAAGAAGTATGat/at																																												NEWRECORD																																		
FOXA1	0	MSKCC	GRCh37	14	38061575	38061576	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AT			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	195	218	0	ENST00000250448.2:c.412_413dup	p.Met138IlefsTer2	p.M138Ifs*2	ENST00000250448	NM_004496.3	138	atg/atATg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120780	115120787	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCGGTC	TGCCGGTC	-			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	302	441	0	ENST00000257566.3:c.219_226del	p.Glu73AspfsTer35	p.E73Dfs*35	ENST00000257566	NM_016569.3	73	gaGACCGGCAtc/gatc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579590	7579591	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	CT			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	277	328	0	ENST00000269305.4:c.97-2_97-1dupAG	p.Leu35ProfsTer10	p.L35Pfs*10	ENST00000269305	NM_001126112.2	32	-/AG																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151932964	151932971	+	frameshift_variant	Frame_Shift_Del	DEL	CCGACAGT	CCGACAGT	-			P-0004753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	187	8	0	ENST00000262189.6:c.2700_2707del	p.Leu901AlafsTer30	p.L901Afs*30	ENST00000262189	NM_170606.2	900	ggACTGTCGGgg/gggg																																												NEWRECORD																																		
ERBB2	2064	MSKCC	GRCh37	17	37880981	37880982	+	inframe_insertion	In_Frame_Ins	INS	-	-	GCATACGTGATG			P-0005562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	374	381	0	ENST00000269571.5:c.2313_2324dup	p.Tyr772_Ala775dup	p.Y772_A775dup	ENST00000269571		772	-/GCATACGTGATG																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578247	7578247	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	368	445	0	ENST00000269305.4:c.602delT	p.Leu201CysfsTer46	p.L201Cfs*46	ENST00000269305	NM_001126112.2	201	tTg/tg																																												NEWRECORD																																		
AKT2	0	MSKCC	GRCh37	19	40743879	40743879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	114	326	0	ENST00000392038.2:c.828C>G	p.Ile276Met	p.I276M	ENST00000392038	NM_001626.4	276	atC/atG																																												NEWRECORD																																		
MED12	0	MSKCC	GRCh37	X	70339987	70339987	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	402	241	0	ENST00000374080.3:c.520A>G	p.Lys174Glu	p.K174E	ENST00000374080		174	Aag/Gag																																												NEWRECORD																																		
XPO1	0	MSKCC	GRCh37	2	61725838	61725838	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	135	339	0	ENST00000401558.2:c.729G>T	p.Glu243Asp	p.E243D	ENST00000401558	NM_003400.3	243	gaG/gaT																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117647500	117647500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	237	686	1	ENST00000368508.3:c.5444G>A	p.Cys1815Tyr	p.C1815Y	ENST00000368508	NM_002944.2	1815	tGc/tAc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023282	27023282	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	83	233	0	ENST00000324856.7:c.388del	p.Asp130MetfsTer102	p.D130Mfs*102	ENST00000324856	NM_006015.4	130	Gat/at																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073791	8073792	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TA			P-0010574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	327	1003	0	ENST00000377482.5:c.866_867dup	p.Pro290TyrfsTer6	p.P290Yfs*6	ENST00000377482	NM_018948.3	289	-/TA																																												NEWRECORD																																		
LATS2	26524	MSKCC	GRCh37	13	21562482	21562483	+	inframe_insertion	In_Frame_Ins	INS	-	-	GGGGCG	rs550642106		P-0003944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	11	58	0	ENST00000382592.4:c.1431_1436dup	p.Pro479_Ala480dup	p.P479_A480dup	ENST00000382592	NM_014572.2	479	ccg/ccCGCCCCg																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178095703	178095703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1258	529	703	1	ENST00000397062.3:c.1628A>G	p.Lys543Arg	p.K543R	ENST00000397062	NM_006164.4	543	aAa/aGa																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134911485	134911485	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	155	391	0	ENST00000398015.3:c.1950C>G	p.Ile650Met	p.I650M	ENST00000398015	NM_004441.4	650	atC/atG																																												NEWRECORD																																		
SMAD3	0	MSKCC	GRCh37	15	67358640	67358640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	418	513	0	ENST00000327367.4:c.148G>A	p.Glu50Lys	p.E50K	ENST00000327367	NM_005902.3	50	Gag/Aag																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17119711	17119711	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199889477		P-0003944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	177	422	0	ENST00000285071.4:c.1283C>T	p.Pro428Leu	p.P428L	ENST00000285071	NM_144997.5	428	cCc/cTc																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45007753	45007753	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	140	419	0	ENST00000558401.1:c.204del	p.Val69TrpfsTer34	p.V69Wfs*34	ENST00000558401	NM_004048.2	67	gAa/ga																																												NEWRECORD																																		
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	31	154	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	28	172	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56489535	56489535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	212	395	1	ENST00000267101.3:c.2000G>A	p.Arg667His	p.R667H	ENST00000267101	NM_001982.3	667	cGt/cAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175675	112175676	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	AG			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	119	418	0	ENST00000257430.4:c.4393_4394dupAG	p.Ser1465ArgfsTer9	p.S1465Rfs*9	ENST00000257430	NM_000038.5	1462	aag/aAGag																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	115	374	0	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct																																												NEWRECORD																																		
B2M	567	MSKCC	GRCh37	15	45003786	45003789	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	145	451	0	ENST00000558401.1:c.45_48del	p.Ser16AlafsTer27	p.S16Afs*27	ENST00000558401	NM_004048.2	14	tcTCTT/tc																																												NEWRECORD																																		
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	109	333	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	113	378	0	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152129329	152129329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	155	497	1	ENST00000206249.3:c.287del	p.Gly96ValfsTer13	p.G96Vfs*13	ENST00000206249	NM_000125.3	94	ctG/ct																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57480483	57480483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	29	290	1	ENST00000371085.3:c.478C>T	p.Arg160Cys	p.R160C	ENST00000371085	NM_000516.4	160	Cgt/Tgt																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153249542	153249542	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	84	237	0	ENST00000281708.4:c.1237-1G>A		p.X413_splice	ENST00000281708	NM_033632.3	413																																													NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	128	381	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63412110	63412110	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1248	360	1181	1	ENST00000330258.3:c.1057C>T	p.Arg353Ter	p.R353*	ENST00000330258	NM_152424.3	353	Cga/Tga																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	69	217	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81960742	81960742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	306	915	1	ENST00000359376.3:c.2473G>A	p.Glu825Lys	p.E825K	ENST00000359376	NM_002661.3	825	Gag/Aag																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56439936	56439936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	85	434	3	ENST00000407977.2:c.656G>A	p.Arg219His	p.R219H	ENST00000407977		219	cGc/cAc																																												NEWRECORD																																		
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	181	411	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118392858	118392858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	144	433	0	ENST00000534358.1:c.11890G>A	p.Ala3964Thr	p.A3964T	ENST00000534358	NM_005933.3	3964	Gcc/Acc																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78857238	78857238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	187	542	0	ENST00000306801.3:c.1604C>T	p.Thr535Met	p.T535M	ENST00000306801	NM_020761.2	535	aCg/aTg																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	274	874	2	ENST00000329236.7:c.1459+1G>A		p.X487_splice	ENST00000329236	NM_001204466.1	487																																													NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27094449	27094449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	92	348	0	ENST00000324856.7:c.3157C>T	p.Arg1053Cys	p.R1053C	ENST00000324856	NM_006015.4	1053	Cgc/Tgc																																												NEWRECORD																																		
RIT1	0	MSKCC	GRCh37	1	155870301	155870301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	117	671	2	ENST00000368323.3:c.538C>T	p.Arg180Trp	p.R180W	ENST00000368323	NM_006912.5	180	Cgg/Tgg																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25497824	25497824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	85	540	0	ENST00000264709.3:c.625C>T	p.Arg209Cys	p.R209C	ENST00000264709	NM_175629.2	209	Cgc/Tgc																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29541235	29541235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	173	416	2	ENST00000389048.3:c.1582G>A	p.Ala528Thr	p.A528T	ENST00000389048	NM_004304.4	528	Gct/Act																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29917799	29917799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	101	545	1	ENST00000389048.3:c.869G>T	p.Trp290Leu	p.W290L	ENST00000389048	NM_004304.4	290	tGg/tTg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	30143117	30143117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	82	575	3	ENST00000389048.3:c.409C>T	p.Arg137Cys	p.R137C	ENST00000389048	NM_004304.4	137	Cgt/Tgt																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99163066	99163066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	140	355	1	ENST00000074304.5:c.1072G>A	p.Val358Ile	p.V358I	ENST00000074304	NM_001134224.1	358	Gtc/Atc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55127445	55127445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	83	582	0	ENST00000257290.5:c.233G>A	p.Ser78Asn	p.S78N	ENST00000257290	NM_006206.4	78	aGc/aAc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187540380	187540380	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202097333		P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	112	300	0	ENST00000441802.2:c.7360C>T	p.Arg2454Trp	p.R2454W	ENST00000441802	NM_005245.3	2454	Cgg/Tgg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38944548	38944548	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	93	411	0	ENST00000357387.3:c.4913C>T	p.Thr1638Ile	p.T1638I	ENST00000357387	NM_152756.3	1638	aCa/aTa																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173374	112173374	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	150	500	0	ENST00000257430.4:c.2083C>T	p.Gln695Ter	p.Q695*	ENST00000257430	NM_000038.5	695	Cag/Tag																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149514414	149514414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	173	565	0	ENST00000261799.4:c.530G>A	p.Arg177His	p.R177H	ENST00000261799	NM_002609.3	177	cGt/cAt																																												NEWRECORD																																		
IRF4	0	MSKCC	GRCh37	6	398863	398863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	114	587	1	ENST00000380956.4:c.673C>A	p.Pro225Thr	p.P225T	ENST00000380956	NM_001195286.1	225	Cca/Aca																																												NEWRECORD																																		
HIST1H3C	0	MSKCC	GRCh37	6	26045799	26045799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1384	384	1376	1	ENST00000540144.1:c.161G>A	p.Arg54His	p.R54H	ENST00000540144	NM_003531.2	54	cGc/cAc																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	14026264	14026264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	97	257	0	ENST00000405192.2:c.180A>C	p.Glu60Asp	p.E60D	ENST00000405192	NM_001163147.1	60	gaA/gaC																																												NEWRECORD																																		
IKZF1	0	MSKCC	GRCh37	7	50444483	50444483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	35	88	0	ENST00000331340.3:c.413G>A	p.Ser138Asn	p.S138N	ENST00000331340	NM_006060.4	138	aGc/aAc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55242454	55242454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	86	421	0	ENST00000275493.2:c.2224G>A	p.Val742Ile	p.V742I	ENST00000275493	NM_005228.3	742	Gtc/Atc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116395479	116395479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	138	386	0	ENST00000397752.3:c.1772G>C	p.Arg591Pro	p.R591P	ENST00000397752	NM_000245.2	591	cGg/cCg																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145738814	145738814	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	135	305	3	ENST00000428558.2:c.2251C>T	p.Arg751Trp	p.R751W	ENST00000428558	NM_004260.3	751	Cgg/Tgg																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114900964	114900964	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1353	409	1194	0	ENST00000543371.1:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000543371	NM_001198531.1	192	Cag/Tag																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108218066	108218066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	62	254	0	ENST00000278616.4:c.8645C>T	p.Ser2882Leu	p.S2882L	ENST00000278616	NM_000051.3	2882	tCa/tTa																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118352595	118352595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	193	529	0	ENST00000534358.1:c.3800T>C	p.Val1267Ala	p.V1267A	ENST00000534358	NM_005933.3	1267	gTc/gCc																																												NEWRECORD																																		
H3F3C	0	MSKCC	GRCh37	12	31945025	31945025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	134	934	0	ENST00000340398.3:c.76G>A	p.Ala26Thr	p.A26T	ENST00000340398	NM_001013699.2	26	Gcc/Acc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46230569	46230569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	161	593	0	ENST00000334344.6:c.818C>A	p.Pro273His	p.P273H	ENST00000334344	NM_152641.2	273	cCt/cAt																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103518146	103518146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	41	295	0	ENST00000355739.4:c.2084C>T	p.Ala695Val	p.A695V	ENST00000355739	NM_000123.3	695	gCt/gTt																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2220634	2220634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	354	815	1	ENST00000326181.6:c.251G>A	p.Arg84His	p.R84H	ENST00000326181	NM_032271.2	84	cGc/cAc																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63533740	63533740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	81	425	0	ENST00000307078.5:c.1414C>T	p.His472Tyr	p.H472Y	ENST00000307078	NM_004655.3	472	Cac/Tac																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10248620	10248620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	168	403	0	ENST00000340748.4:c.4133G>A	p.Arg1378Gln	p.R1378Q	ENST00000340748		1378	cGg/cAg																																												NEWRECORD																																		
PPP2R1A	0	MSKCC	GRCh37	19	52719286	52719286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	224	537	1	ENST00000322088.6:c.952C>T	p.Arg318Trp	p.R318W	ENST00000322088	NM_014225.5	318	Cgg/Tgg																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411416	63411416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	239	731	0	ENST00000330258.3:c.1751G>A	p.Arg584His	p.R584H	ENST00000330258	NM_152424.3	584	cGt/cAt																																												NEWRECORD																																		
AMER1	0	MSKCC	GRCh37	X	63411575	63411575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	274	1035	2	ENST00000330258.3:c.1592G>A	p.Arg531Gln	p.R531Q	ENST00000330258	NM_152424.3	531	cGa/cAa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76918952	76918952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1299	101	872	1	ENST00000373344.5:c.4039G>A	p.Val1347Met	p.V1347M	ENST00000373344	NM_000489.3	1347	Gtg/Atg																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76940002	76940002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	106	638	0	ENST00000373344.5:c.746G>A	p.Gly249Asp	p.G249D	ENST00000373344	NM_000489.3	249	gGt/gAt																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76952115	76952115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	189	658	1	ENST00000373344.5:c.320C>T	p.Ala107Val	p.A107V	ENST00000373344	NM_000489.3	107	gCg/gTg																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42792110	42792112	+	inframe_deletion	In_Frame_Del	DEL	CTG	CTG	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	73	254	0	ENST00000575354.2:c.921_923del	p.Ala308del	p.A308del	ENST00000575354	NM_015125.3	305	aCTGct/act																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47710024	47710027	+	frameshift_variant	Frame_Shift_Del	DEL	AAGT	AAGT	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	85	352	0	ENST00000233146.2:c.2743_2746del	p.Val915Ter	p.V915*	ENST00000233146	NM_000251.2	914	gAAGTa/ga																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81973536	81973538	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	124	787	0	ENST00000359376.3:c.3355_3357del	p.Lys1119del	p.K1119del	ENST00000359376	NM_002661.3	1118	gAGAag/gag																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89653780	89653781	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0013082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	33	281	0	ENST00000371953.3:c.80-1_80del		p.X27_splice	ENST00000371953	NM_000314.4	27																																													NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	327	500	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	120	205	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180057235	180057235	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148392893		P-0004834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	42	335	0	ENST00000261937.6:c.503C>T	p.Thr168Met	p.T168M	ENST00000261937	NM_182925.4	168	aCg/aTg																																												NEWRECORD																																		
HIST1H3J	0	MSKCC	GRCh37	6	27858185	27858185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	86	599	1	ENST00000359303.2:c.386G>A	p.Arg129His	p.R129H	ENST00000359303	NM_003535.2	129	cGt/cAt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170752	112170753	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0004834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	89	452	0	ENST00000257430.4:c.1848_1849del	p.Leu616PhefsTer17	p.L616Ffs*17	ENST00000257430	NM_000038.5	616	ttGGtt/tttt																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112170745	112170746	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0004834-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	89	442	0	ENST00000257430.4:c.1842dup	p.Phe615IlefsTer19	p.F615Ifs*19	ENST00000257430	NM_000038.5	614	gca/gcAa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176722375	176722375	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002023-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	83	861	3	ENST00000439151.2:c.8006A>G	p.Gln2669Arg	p.Q2669R	ENST00000439151	NM_022455.4	2669	cAa/cGa																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115853	8115854	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0002023-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	144	871	0	ENST00000346208.3:c.1200dup	p.Ser401ValfsTer106	p.S401Vfs*106	ENST00000346208		400	atg/atGg																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741585	17741585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	20	37	1	ENST00000250003.3:c.256G>A	p.Gly86Arg	p.G86R	ENST00000250003	NM_002478.4	86	Ggg/Agg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576889	7576890	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0009906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	128	426	0	ENST00000269305.4:c.956dup	p.Lys320GlufsTer17	p.K320Efs*17	ENST00000269305	NM_001126112.2	319	aag/aaAg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157522275	157522275	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	142	455	0	ENST00000346085.5:c.4547del	p.Val1516AlafsTer63	p.V1516Afs*63	ENST00000346085	NM_020732.3	1516	gTc/gc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52595893	52595906	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTCACTGCTGAA	ATCTCACTGCTGAA	-			P-0009906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	89	554	0	ENST00000394830.3:c.4009_4022del	p.Phe1337GlufsTer5	p.F1337Efs*5	ENST00000394830	NM_018313.4	1337	TTCAGCAGTGAGATg/g																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	9	367	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	17	368	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41739678	41739678	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	36	952	0	ENST00000242208.4:c.295G>A	p.Gly99Arg	p.G99R	ENST00000242208	NM_002192.2	99	Ggg/Agg																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113343	209113344	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0011012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	15	408	0	ENST00000345146.2:c.163dup	p.Gln55ProfsTer14	p.Q55Pfs*14	ENST00000345146	NM_005896.2	55	caa/cCaa																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0000716-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	306	491	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg																																												NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16257251	16257251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000716-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	147	287	1	ENST00000375759.3:c.4516G>T	p.Gly1506Trp	p.G1506W	ENST00000375759	NM_015001.2	1506	Ggg/Tgg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8341102	8341102	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201441177		P-0000716-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	86	409	0	ENST00000356435.5:c.5114T>C	p.Ile1705Thr	p.I1705T	ENST00000356435		1705	aTt/aCt																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21968243	21968243	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0000716-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	131	236	0	ENST00000304494.5:c.458-2A>G		p.X153_splice	ENST00000304494	NM_000077.4	153																																													NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21968243	21968243	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0000716-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	131	236	0	ENST00000304494.5:c.458-2A>G		p.X153_splice	ENST00000304494	NM_000077.4	153																																													NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	343507	343507	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000716-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	136	463	1	ENST00000262320.3:c.2167C>T	p.Arg723Ter	p.R723*	ENST00000262320	NM_003502.3	723	Cga/Tga																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118365421	118365422	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0000716-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	182	489	0	ENST00000534358.1:c.5307dupT	p.Pro1770SerfsTer15	p.P1770Sfs*15	ENST00000534358	NM_005933.3	1768	gtt/gTtt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	18	208	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8115704	8115705	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0007423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	63	376	0	ENST00000346208.3:c.1052dup	p.Asn351LysfsTer20	p.N351Kfs*20	ENST00000346208		350	-/A																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112399	115112400	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0007423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	21	194	0	ENST00000257566.3:c.1340dup	p.Gly448ArgfsTer244	p.G448Rfs*244	ENST00000257566	NM_016569.3	447	cgc/cgGc																																												NEWRECORD																																		
CBFB	0	MSKCC	GRCh37	16	67063703	67063704	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0007423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			17	18	236	0	ENST00000412916.2:c.152_153del	p.Gly51AlafsTer31	p.G51Afs*31	ENST00000412916		51	gGC/g																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56177371	56177402	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGTAATGAATGTTTTTTTCTTTCAGGTATAA	TGGTAATGAATGTTTTTTTCTTTCAGGTATAA	CCTGAAAGAAAAAAACATTCATT			P-0007423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	38	237	0	ENST00000399503.3:c.2370-26_2375delinsCCTGAAAGAAAAAAACATTCATT		p.X790_splice	ENST00000399503	NM_005921.1	790																																													NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138426123	138426123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	308	550	0	ENST00000289153.2:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000289153	NM_006219.2	470	Gaa/Aaa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18443865	18443865	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	316	618	0	ENST00000266497.5:c.838T>C	p.Tyr280His	p.Y280H	ENST00000266497		280	Tat/Cat																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220440203	220440203	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	358	1109	0	ENST00000243786.2:c.1056T>G	p.Tyr352Ter	p.Y352*	ENST00000243786	NM_002191.3	352	taT/taG																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180030224	180030224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	772	735	2	ENST00000261937.6:c.4060C>T	p.Arg1354Cys	p.R1354C	ENST00000261937	NM_182925.4	1354	Cgc/Tgc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89720737	89720737	+	frameshift_variant	Frame_Shift_Ins	INS	T	T	GGG			P-0013858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	15	120	0	ENST00000371953.3:c.888delinsGGG	p.Cys296TrpfsTer12	p.C296Wfs*12	ENST00000371953	NM_000314.4	296	tgT/tgGGG																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	257	338	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	159	347	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	138	311	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	340	316	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66467901	66467901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	212	451	0	ENST00000273854.3:c.368C>T	p.Ala123Val	p.A123V	ENST00000273854	NM_004439.5	123	gCt/gTt																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70119889	70119889	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	187	332	0	ENST00000245479.2:c.891C>A	p.Tyr297Ter	p.Y297*	ENST00000245479	NM_000346.3	297	taC/taA																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48573597	48573598	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	49	336	0	ENST00000342988.3:c.182dup	p.Thr62AsnfsTer8	p.T62Nfs*8	ENST00000342988	NM_005359.5	61	ata/aTta																																												NEWRECORD																																		
TCF7L2	0	MSKCC	GRCh37	10	114925621	114925622	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCCC			P-0010203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1451	377	973	0	ENST00000543371.1:c.1701_1704dup	p.Ser569ProfsTer41	p.S569Pfs*41	ENST00000543371	NM_001198531.1	567	gcc/gCCCCcc																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023307	27023307	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	11	61	0	ENST00000324856.7:c.413C>G	p.Ser138Ter	p.S138*	ENST00000324856	NM_006015.4	138	tCa/tGa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	87	310	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt																																												NEWRECORD																																		
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	85	192	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	20	74	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	141	451	0	ENST00000263967.3:c.317G>T	p.Gly106Val	p.G106V	ENST00000263967	NM_006218.2	106	gGc/gTc																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38962631	38962631	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	93	364	0	ENST00000357387.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000357387	NM_152756.3	542	Gag/Cag																																												NEWRECORD																																		
MAP3K1	4214	MSKCC	GRCh37	5	56168741	56168741	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs775802110		P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	128	285	0	ENST00000399503.3:c.1595G>A	p.Arg532Gln	p.R532Q	ENST00000399503	NM_005921.1	532	cGa/cAa																																												NEWRECORD																																		
RAD50	0	MSKCC	GRCh37	5	131951767	131951767	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	73	279	0	ENST00000265335.6:c.3109G>C	p.Glu1037Gln	p.E1037Q	ENST00000265335		1037	Gaa/Caa																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99478625	99478625	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	115	323	0	ENST00000268035.6:c.3267T>A	p.Ser1089Arg	p.S1089R	ENST00000268035	NM_000875.3	1089	agT/agA																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68867192	68867192	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	82	208	0	ENST00000261769.5:c.2440-1G>A		p.X814_splice	ENST00000261769	NM_004360.3	814																																													NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29554307	29554307	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	102	241	0	ENST00000358273.4:c.2323G>A	p.Glu775Lys	p.E775K	ENST00000358273	NM_001042492.2	775	Gag/Aag																																												NEWRECORD																																		
CCNE1	0	MSKCC	GRCh37	19	30303651	30303651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	112	258	0	ENST00000262643.3:c.79C>T	p.Arg27Cys	p.R27C	ENST00000262643	NM_001238.2	27	Cgc/Tgc																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31388695	31388695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	108	312	0	ENST00000328111.2:c.1960C>T	p.Leu654Phe	p.L654F	ENST00000328111	NM_006892.3	654	Ctc/Ttc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766213	66766213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	57	180	0	ENST00000374690.3:c.1225G>A	p.Gly409Arg	p.G409R	ENST00000374690	NM_000044.3	409	Ggg/Agg																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8111524	8111525	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0003224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	98	295	0	ENST00000346208.3:c.1011dup	p.Cys338LeufsTer14	p.C338Lfs*14	ENST00000346208		337	gtc/gtCc																																												NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	335	442	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108123615	108123616	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0008126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	126	369	0	ENST00000278616.4:c.1880dup	p.Gln628ProfsTer7	p.Q628Pfs*7	ENST00000278616	NM_000051.3	625	aat/aaTt																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108205735	108205735	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	342	427	0	ENST00000278616.4:c.8050C>T	p.Gln2684Ter	p.Q2684*	ENST00000278616	NM_000051.3	2684	Cag/Tag																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88680751	88680751	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	316	398	0	ENST00000360948.2:c.506G>T	p.Arg169Leu	p.R169L	ENST00000360948	NM_001012338.2	169	cGc/cTc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207081	1207081	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	327	406	1	ENST00000326873.7:c.169G>T	p.Glu57Ter	p.E57*	ENST00000326873	NM_000455.4	57	Gaa/Taa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002599-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	86	413	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0002599-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			137	65	166	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204735635	204735635	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002599-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	69	147	0	ENST00000302823.3:c.436G>T	p.Gly146Ter	p.G146*	ENST00000302823	NM_005214.4	146	Gga/Tga																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55229225	55229225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002599-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	65	207	0	ENST00000275493.2:c.1532C>A	p.Ser511Tyr	p.S511Y	ENST00000275493	NM_005228.3	511	tCc/tAc																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70332909	70332909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002599-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	95	443	0	ENST00000373644.4:c.814G>C	p.Glu272Gln	p.E272Q	ENST00000373644	NM_030625.2	272	Gag/Cag																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333266	70333266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002599-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	79	391	0	ENST00000373644.4:c.1171G>A	p.Glu391Lys	p.E391K	ENST00000373644	NM_030625.2	391	Gag/Aag																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56488282	56488282	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002599-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	131	327	0	ENST00000267101.3:c.1801T>A	p.Tyr601Asn	p.Y601N	ENST00000267101	NM_001982.3	601	Tac/Aac																																												NEWRECORD																																		
ASXL2	0	MSKCC	GRCh37	2	25973093	25973093	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002599-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	107	371	0	ENST00000435504.4:c.1332del	p.Glu445LysfsTer77	p.E445Kfs*77	ENST00000435504		444	aaA/aa																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123205083	123205084	+	stop_gained,frameshift_variant	Nonsense_Mutation	INS	-	-	A			P-0002599-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			115	132	232	0	ENST00000218089.9:c.2444dup	p.Tyr815Ter	p.Y815*	ENST00000218089	NM_001042749.1	815	tat/tAat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	114	487	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49444932	49444933	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	22	159	0	ENST00000301067.7:c.2533dup	p.Arg845ProfsTer3	p.R845Pfs*3	ENST00000301067	NM_003482.3	845	cgg/cCgg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3786748	3786748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	106	506	0	ENST00000262367.5:c.4463C>T	p.Pro1488Leu	p.P1488L	ENST00000262367	NM_004380.2	1488	cCa/cTa																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27023676	27023676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	45	345	0	ENST00000324856.7:c.782C>G	p.Ser261Trp	p.S261W	ENST00000324856	NM_006015.4	261	tCg/tGg																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46715730	46715730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	140	510	0	ENST00000371975.4:c.149C>A	p.Pro50His	p.P50H	ENST00000371975	NM_003579.3	50	cCt/cAt																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098962	178098962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	91	242	0	ENST00000397062.3:c.83T>C	p.Ile28Thr	p.I28T	ENST00000397062	NM_006164.4	28	aTa/aCa																																												NEWRECORD																																		
HIST1H3H	0	MSKCC	GRCh37	6	27778051	27778051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	262	884	0	ENST00000369163.2:c.200C>T	p.Pro67Leu	p.P67L	ENST00000369163	NM_003536.2	67	cCt/cTt																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29910349	29910349	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	121	403	1	ENST00000376809.5:c.19C>T	p.Arg7Ter	p.R7*	ENST00000376809	NM_002116.7	7	Cga/Tga																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30670985	30670985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	103	381	0	ENST00000376406.3:c.5761G>A	p.Ala1921Thr	p.A1921T	ENST00000376406	NM_014641.2	1921	Gca/Aca																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43596008	43596008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	152	390	0	ENST00000355710.3:c.175G>T	p.Ala59Ser	p.A59S	ENST00000355710	NM_020975.4	59	Gcc/Tcc																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64136054	64136054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	49	253	0	ENST00000334205.4:c.1315G>A	p.Val439Ile	p.V439I	ENST00000334205	NM_003942.2	439	Gtc/Atc																																												NEWRECORD																																		
FGF3	0	MSKCC	GRCh37	11	69633677	69633677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	16	60	0	ENST00000334134.2:c.25C>T	p.Leu9Phe	p.L9F	ENST00000334134	NM_005247.2	9	Ctc/Ttc																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1042172	1042172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	58	465	0	ENST00000358495.3:c.53C>T	p.Ala18Val	p.A18V	ENST00000358495	NM_134424.2	18	gCt/gTt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49435887	49435887	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	56	445	0	ENST00000301067.7:c.6094A>G	p.Lys2032Glu	p.K2032E	ENST00000301067	NM_003482.3	2032	Aag/Gag																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110435136	110435136	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	57	271	1	ENST00000375856.3:c.3265G>C	p.Ala1089Pro	p.A1089P	ENST00000375856	NM_003749.2	1089	Gcc/Ccc																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81610314	81610314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	27	337	0	ENST00000298171.2:c.1912G>A	p.Ala638Thr	p.A638T	ENST00000298171	NM_000369.2	638	Gcc/Acc																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89337232	89337232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	48	325	0	ENST00000301030.4:c.7799G>A	p.Arg2600His	p.R2600H	ENST00000301030	NM_001256183.1	2600	cGc/cAc																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17118345	17118345	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	57	423	0	ENST00000285071.4:c.1492G>T	p.Asp498Tyr	p.D498Y	ENST00000285071	NM_144997.5	498	Gat/Tat																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37681124	37681124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	43	307	0	ENST00000447079.4:c.3293C>T	p.Ala1098Val	p.A1098V	ENST00000447079	NM_015083.1	1098	gCt/gTt																																												NEWRECORD																																		
FAM46C	0	MSKCC	GRCh37	1	118166214	118166214	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	60	346	0	ENST00000369448.3:c.728del	p.Gly243AspfsTer24	p.G243Dfs*24	ENST00000369448	NM_017709.3	242	Ggg/gg																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108213958	108213959	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	60	295	0	ENST00000278616.4:c.8283_8284del	p.Gln2762AlafsTer6	p.Q2762Afs*6	ENST00000278616	NM_000051.3	2760	CTc/c																																												NEWRECORD																																		
JAK1	0	MSKCC	GRCh37	1	65330629	65330630	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	62	291	0	ENST00000342505.4:c.1016dupA	p.Asn339LysfsTer2	p.N339Kfs*2	ENST00000342505	NM_002227.2	339	aat/aaAt																																												NEWRECORD																																		
KMT2D	8085	MSKCC	GRCh37	12	49444378	49444378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	40	331	1	ENST00000301067.7:c.2993del	p.Pro998LeufsTer2	p.P998Lfs*2	ENST00000301067	NM_003482.3	998	cCt/ct																																												NEWRECORD																																		
FANCC	0	MSKCC	GRCh37	9	97934431	97934432	+	splice_region_variant,intron_variant	Splice_Region	INS	-	-	A			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	33	271	0	ENST00000289081.3:c.346-3dup		p.X116_splice	ENST00000289081	NM_000136.2	116																																													NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344955	118344955	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	79	327	0	ENST00000534358.1:c.3086delA	p.Lys1029ArgfsTer65	p.K1029Rfs*65	ENST00000534358	NM_005933.3	1027	ctA/ct																																												NEWRECORD																																		
MDM2	0	MSKCC	GRCh37	12	69233090	69233090	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	81	361	0	ENST00000462284.1:c.961delC	p.Leu321PhefsTer52	p.L321Ffs*52	ENST00000462284	NM_002392.5	319	Ccc/cc																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3817720	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Ins	INS	-	-	T			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	221	481	0	ENST00000262367.5:c.3250dupA	p.Ile1084AsnfsTer3	p.I1084Nfs*3	ENST00000262367	NM_004380.2	1084	atc/aAtc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29005310	29005311	+	missense_variant	Missense_Mutation	DNP	TG	TG	AT			P-0006265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	71	352	0	ENST00000282397.4:c.950_951delinsAT	p.Pro317His	p.P317H	ENST00000282397	NM_002019.4	317	cCA/cAT																																												NEWRECORD																																		
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	113	353	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	164	396	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52595930	52595930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	354	594	0	ENST00000394830.3:c.3985A>G	p.Ile1329Val	p.I1329V	ENST00000394830	NM_018313.4	1329	Atc/Gtc																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66280031	66280031	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	104	435	0	ENST00000273854.3:c.1658G>T	p.Arg553Leu	p.R553L	ENST00000273854	NM_004439.5	553	cGa/cTa																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139412325	139412325	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	491	434	0	ENST00000277541.6:c.1320T>G	p.Cys440Trp	p.C440W	ENST00000277541	NM_017617.3	440	tgT/tgG																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26923260	26923260	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	323	563	0	ENST00000381527.3:c.256C>G	p.Leu86Val	p.L86V	ENST00000381527	NM_001260.1	86	Ctg/Gtg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426812	49426813	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	TCGT			P-0010817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	210	333	0	ENST00000301067.7:c.11675_11676insACGA	p.Pro3893ArgfsTer120	p.P3893Rfs*120	ENST00000301067	NM_003482.3	3892	cag/caACGAg																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49425773	49425774	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0010817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	243	410	1	ENST00000301067.7:c.12714_12715del	p.Gln4239AspfsTer94	p.Q4239Dfs*94	ENST00000301067	NM_003482.3	4238	cgCCag/cgag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579316	7579317	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0010817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	257	350	0	ENST00000269305.4:c.370dupT	p.Cys124LeufsTer25	p.C124Lfs*25	ENST00000269305	NM_001126112.2	124	tgc/tTgc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	49	460	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	27	286	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333850	70333850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	41	528	2	ENST00000373644.4:c.1755G>T	p.Lys585Asn	p.K585N	ENST00000373644	NM_030625.2	585	aaG/aaT																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18650633	18650633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	59	516	0	ENST00000266497.5:c.2844G>T	p.Leu948Phe	p.L948F	ENST00000266497		948	ttG/ttT																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27093012	27093012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	51	746	0	ENST00000324856.7:c.2943G>A	p.Met981Ile	p.M981I	ENST00000324856	NM_006015.4	981	atG/atA																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27097721	27097721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	42	671	0	ENST00000324856.7:c.3310G>A	p.Glu1104Lys	p.E1104K	ENST00000324856	NM_006015.4	1104	Gaa/Aaa																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25466851	25466851	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	19	480	0	ENST00000264709.3:c.1852G>A	p.Asp618Asn	p.D618N	ENST00000264709	NM_175629.2	618	Gac/Aac																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99181106	99181106	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	19	481	0	ENST00000074304.5:c.2047A>T	p.Thr683Ser	p.T683S	ENST00000074304	NM_001134224.1	683	Acc/Tcc																																												NEWRECORD																																		
MST1R	0	MSKCC	GRCh37	3	49939884	49939884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	32	793	1	ENST00000296474.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000296474	NM_002447.2	387	Gaa/Aaa																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66280109	66280109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	59	471	0	ENST00000273854.3:c.1580C>A	p.Ala527Glu	p.A527E	ENST00000273854	NM_004439.5	527	gCa/gAa																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153258956	153258956	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	72	572	0	ENST00000281708.4:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000281708	NM_033632.3	287	Gag/Cag																																												NEWRECORD																																		
CDKN1A	0	MSKCC	GRCh37	6	36653556	36653556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	34	559	0	ENST00000244741.5:c.474C>G	p.Ile158Met	p.I158M	ENST00000244741	NM_000389.4	158	atC/atG																																												NEWRECORD																																		
PIM1	0	MSKCC	GRCh37	6	37140870	37140870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	22	657	0	ENST00000373509.5:c.706G>T	p.Val236Leu	p.V236L	ENST00000373509	NM_002648.3	236	Gtg/Ttg																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151949166	151949166	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	59	442	0	ENST00000262189.6:c.1479C>A	p.His493Gln	p.H493Q	ENST00000262189	NM_170606.2	493	caC/caA																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98248124	98248124	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	24	493	0	ENST00000331920.6:c.427A>T	p.Thr143Ser	p.T143S	ENST00000331920	NM_000264.3	143	Act/Tct																																												NEWRECORD																																		
BRIP1	0	MSKCC	GRCh37	17	59886090	59886090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	40	422	0	ENST00000259008.2:c.656G>T	p.Cys219Phe	p.C219F	ENST00000259008	NM_032043.2	219	tGt/tTt																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221975	1221975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	25	623	0	ENST00000326873.7:c.890G>A	p.Arg297Lys	p.R297K	ENST00000326873	NM_000455.4	297	aGg/aAg																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153247345	153247346	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	A			P-0005848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	70	443	0	ENST00000281708.4:c.1456dup	p.Trp486LeufsTer4	p.W486Lfs*4	ENST00000281708	NM_033632.3	486	tgg/tTgg																																												NEWRECORD																																		
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	177	445	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37881414	37881414	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	371	405	0	ENST00000269571.5:c.2606T>G	p.Leu869Arg	p.L869R	ENST00000269571		869	cTg/cGg																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98238378	98238378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	144	458	0	ENST00000331920.6:c.1666G>A	p.Val556Ile	p.V556I	ENST00000331920	NM_000264.3	556	Gtc/Atc																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68835650	68835650	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	251	689	0	ENST00000261769.5:c.242del	p.Gly81ValfsTer2	p.G81Vfs*2	ENST00000261769	NM_004360.3	81	Ggt/gt																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112434	115112435	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0010655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	170	346	0	ENST00000257566.3:c.1305dup	p.Arg436ThrfsTer3	p.R436Tfs*3	ENST00000257566	NM_016569.3	435	-/A																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	1241	498	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	508	465	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	225	543	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874092	151874093	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	T			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1296	1033	934	0	ENST00000262189.6:c.8445dupA	p.Ser2816IlefsTer6	p.S2816Ifs*6	ENST00000262189	NM_170606.2	2815	-/A																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198265579	198265579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	297	767	1	ENST00000335508.6:c.2578G>A	p.Glu860Lys	p.E860K	ENST00000335508	NM_012433.2	860	Gaa/Aaa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49440431	49440431	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	230	557	1	ENST00000301067.7:c.4379delC	p.Pro1460HisfsTer46	p.P1460Hfs*46	ENST00000301067	NM_003482.3	1460	cCa/ca																																												NEWRECORD																																		
RECQL4	0	MSKCC	GRCh37	8	145737627	145737627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	562	721	3	ENST00000428558.2:c.3136G>A	p.Glu1046Lys	p.E1046K	ENST00000428558	NM_004260.3	1046	Gag/Aag																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49438067	49438067	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	567	616	4	ENST00000301067.7:c.5104C>T	p.Arg1702Ter	p.R1702*	ENST00000301067	NM_003482.3	1702	Cga/Tga																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151874923	151874923	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	530	668	0	ENST00000262189.6:c.7615C>T	p.Gln2539Ter	p.Q2539*	ENST00000262189	NM_170606.2	2539	Cag/Tag																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27097641	27097641	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	584	709	0	ENST00000324856.7:c.3230C>A	p.Ala1077Glu	p.A1077E	ENST00000324856	NM_006015.4	1077	gCa/gAa																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198265492	198265492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	292	723	3	ENST00000335508.6:c.2665G>A	p.Glu889Lys	p.E889K	ENST00000335508	NM_012433.2	889	Gaa/Aaa																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148544368	148544368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	485	618	0	ENST00000320356.2:c.23C>T	p.Ser8Phe	p.S8F	ENST00000320356	NM_004456.4	8	tCt/tTt																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151873492	151873492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1415	632	914	0	ENST00000262189.6:c.9046C>G	p.Gln3016Glu	p.Q3016E	ENST00000262189	NM_170606.2	3016	Caa/Gaa																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151876929	151876929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	416	534	0	ENST00000262189.6:c.7432C>T	p.His2478Tyr	p.H2478Y	ENST00000262189	NM_170606.2	2478	Cat/Tat																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80409501	80409501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	96	471	0	ENST00000286548.4:c.613G>A	p.Asp205Asn	p.D205N	ENST00000286548	NM_002072.3	205	Gat/Aat																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100754	8100754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	412	511	1	ENST00000346208.3:c.728C>A	p.Ser243Tyr	p.S243Y	ENST00000346208		243	tCc/tAc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46215230	46215230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	195	531	0	ENST00000334344.6:c.665G>A	p.Gly222Glu	p.G222E	ENST00000334344	NM_152641.2	222	gGa/gAa																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133218838	133218838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	633	732	1	ENST00000320574.5:c.5098G>A	p.Asp1700Asn	p.D1700N	ENST00000320574	NM_006231.2	1700	Gat/Aat																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3843534	3843534	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	452	522	1	ENST00000262367.5:c.1069C>T	p.Gln357Ter	p.Q357*	ENST00000262367	NM_004380.2	357	Cag/Tag																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3900440	3900440	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	596	795	0	ENST00000262367.5:c.656G>T	p.Gly219Val	p.G219V	ENST00000262367	NM_004380.2	219	gGa/gTa																																												NEWRECORD																																		
HOXB13	0	MSKCC	GRCh37	17	46804357	46804357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1443	359	856	4	ENST00000290295.7:c.650G>A	p.Arg217His	p.R217H	ENST00000290295	NM_006361.5	217	cGc/cAc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36164627	36164627	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	240	526	0	ENST00000300305.3:c.1248C>G	p.Phe416Leu	p.F416L	ENST00000300305		416	ttC/ttG																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64573187	64573196	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCTACTTC	TGGCTACTTC	-			P-0011439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	507	796	3	ENST00000337652.1:c.1111_1120del	p.Glu371MetfsTer8	p.E371Mfs*8	ENST00000337652	NM_130803.2	371	GAAGTAGCCAat/at																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0011545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	152	354	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38279368	38279368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	261	546	2	ENST00000425967.3:c.1121C>T	p.Ala374Val	p.A374V	ENST00000425967	NM_001174067.1	374	gCg/gTg																																												NEWRECORD																																		
CDK6	0	MSKCC	GRCh37	7	92244566	92244566	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	29	299	0	ENST00000265734.4:c.869C>G	p.Ser290Cys	p.S290C	ENST00000265734	NM_001259.6	290	tCt/tGt																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99467792	99467792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	106	419	0	ENST00000268035.6:c.2661G>C	p.Lys887Asn	p.K887N	ENST00000268035	NM_000875.3	887	aaG/aaC																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41199719	41199719	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	415	501	1	ENST00000357654.3:c.5408G>T	p.Gly1803Val	p.G1803V	ENST00000357654	NM_007294.3	1803	gGt/gTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578196	7578197	+	inframe_insertion	In_Frame_Ins	INS	-	-	CCACCACACTAT			P-0011545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	286	562	0	ENST00000269305.4:c.641_652dup	p.Val217_Val218insAspSerValVal	p.V217_V218insDSVV	ENST00000269305	NM_001126112.2	218	gtg/gATAGTGTGGTGGtg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	163	397	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	448	321	1	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17124931	17124931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	99	238	0	ENST00000285071.4:c.791C>T	p.Ala264Val	p.A264V	ENST00000285071	NM_144997.5	264	gCg/gTg																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30090772	30090772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	156	413	1	ENST00000338641.4:c.1769C>A	p.Ala590Asp	p.A590D	ENST00000338641	NM_000268.3	590	gCc/gAc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67591109	67591110	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CAGACCTTAT			P-0007628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	203	315	0	ENST00000274335.5:c.1704_1713dup	p.Gln572ArgfsTer33	p.Q572Rfs*33	ENST00000274335		568	cca/cCAGACCTTATca																																												NEWRECORD																																		
SOX9	0	MSKCC	GRCh37	17	70118864	70118867	+	frameshift_variant	Frame_Shift_Del	DEL	CTGA	CTGA	-			P-0007628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	147	331	0	ENST00000245479.2:c.436_439del	p.Leu146ThrfsTer36	p.L146Tfs*36	ENST00000245479	NM_000346.3	146	CTGAac/ac																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593657	55593679	+	protein_altering_variant	In_Frame_Del	DEL	CAACTTCCTTATGATCACAAATG	CAACTTCCTTATGATCACAAATG	TT			P-0014399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	291	499	2	ENST00000288135.5:c.1723_1745delinsTT	p.Gln575_Trp582delinsLeu	p.Q575_W582delinsL	ENST00000288135	NM_000222.2	575	CAACTTCCTTATGATCACAAATGg/TTg																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135778122	135778123	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	G			P-0014399-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	438	497	0	ENST00000298552.3:c.2260dup	p.Leu754ProfsTer7	p.L754Pfs*7	ENST00000298552	NM_001162426.1	754	ctg/cCtg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	367	689	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg																																												NEWRECORD																																		
FLT3	0	MSKCC	GRCh37	13	28609721	28609721	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	238	903	0	ENST00000241453.7:c.1508T>G	p.Met503Arg	p.M503R	ENST00000241453	NM_004119.2	503	aTg/aGg																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89624289	89624290	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	GACTT			P-0013219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	293	405	0	ENST00000371953.3:c.64_68dup	p.Asp24ThrfsTer2	p.D24Tfs*2	ENST00000371953	NM_000314.4	21	-/GACTT																																												NEWRECORD																																		
EPHA5	0	MSKCC	GRCh37	4	66286240	66286240	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	208	415	0	ENST00000273854.3:c.1446A>C	p.Lys482Asn	p.K482N	ENST00000273854	NM_004439.5	482	aaA/aaC																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46254705	46254706	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	C			P-0006925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	232	472	0	ENST00000334344.6:c.4896dup	p.Met1633HisfsTer8	p.M1633Hfs*8	ENST00000334344	NM_152641.2	1632	ttc/ttCc																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52436412	52436412	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	111	389	0	ENST00000460680.1:c.2082del	p.Asn695ThrfsTer41	p.N695Tfs*41	ENST00000460680	NM_004656.3	694	caG/ca																																												NEWRECORD																																		
SF3B1	23451	MSKCC	GRCh37	2	198266713	198266713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776846119		P-0001532-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			734	463	291	1	ENST00000335508.6:c.2219G>A	p.Gly740Glu	p.G740E	ENST00000335508	NM_012433.2	740	gGa/gAa																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108137962	108137962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001532-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			760	496	339	0	ENST00000278616.4:c.2531G>T	p.Gly844Val	p.G844V	ENST00000278616	NM_000051.3	844	gGa/gTa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	114	378	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0009848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	93	403	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	398	574	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72828553	72828553	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	238	1327	0	ENST00000268489.5:c.8028C>G	p.His2676Gln	p.H2676Q	ENST00000268489	NM_006885.3	2676	caC/caG																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	277	535	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7579722	7579722	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	89	606	0	ENST00000269305.4:c.75-1G>T		p.X25_splice	ENST00000269305	NM_001126112.2	25																																													NEWRECORD																																		
TCF3	0	MSKCC	GRCh37	19	1612283	1612283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	99	874	0	ENST00000344749.5:c.1736C>T	p.Ser579Leu	p.S579L	ENST00000344749	NM_001136139.2	579	tCg/tTg																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	130	123	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190719433	190719433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	107	221	0	ENST00000441310.2:c.1435G>T	p.Gly479Trp	p.G479W	ENST00000441310	NM_000534.4	479	Ggg/Tgg																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30681049	30681049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	118	283	0	ENST00000376406.3:c.670G>A	p.Glu224Lys	p.E224K	ENST00000376406	NM_014641.2	224	Gaa/Aaa																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117710552	117710552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	91	192	0	ENST00000368508.3:c.1720C>G	p.Leu574Val	p.L574V	ENST00000368508	NM_002944.2	574	Ctt/Gtt																																												NEWRECORD																																		
FGFR1	0	MSKCC	GRCh37	8	38287437	38287437	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	101	243	0	ENST00000425967.3:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000425967	NM_001174067.1	74	Gag/Cag																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	108	180	0	ENST00000371953.3:c.274G>C	p.Asp92His	p.D92H	ENST00000371953	NM_000314.4	92	Gac/Cac																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49426751	49426751	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	73	154	0	ENST00000301067.7:c.11737C>T	p.Gln3913Ter	p.Q3913*	ENST00000301067	NM_003482.3	3913	Cag/Tag																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	97	253	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40770633	40770633	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	112	205	1	ENST00000373198.4:c.2749G>A	p.Glu917Lys	p.E917K	ENST00000373198	NM_133170.3	917	Gag/Aag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	399	418	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0004811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	213	388	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	24	184	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	55	306	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	10	125	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa																																												NEWRECORD																																		
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	35	417	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045016	47045016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	50	357	0	ENST00000329236.7:c.2108C>T	p.Ser703Leu	p.S703L	ENST00000329236	NM_001204466.1	703	tCa/tTa																																												NEWRECORD																																		
PARP1	0	MSKCC	GRCh37	1	226568850	226568850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	33	339	0	ENST00000366794.5:c.1219G>A	p.Glu407Lys	p.E407K	ENST00000366794	NM_001618.3	407	Gaa/Aaa																																												NEWRECORD																																		
BCL2L11	0	MSKCC	GRCh37	2	111881573	111881573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	37	277	0	ENST00000393256.3:c.251G>A	p.Arg84Lys	p.R84K	ENST00000393256	NM_006538.4	84	aGa/aAa																																												NEWRECORD																																		
CSF1R	0	MSKCC	GRCh37	5	149433775	149433775	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	24	261	0	ENST00000286301.3:c.2776C>G	p.Leu926Val	p.L926V	ENST00000286301	NM_005211.3	926	Ctg/Gtg																																												NEWRECORD																																		
HIST1H3J	0	MSKCC	GRCh37	6	27858327	27858327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	67	623	0	ENST00000359303.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000359303	NM_003535.2	82	Gac/Aac																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6048643	6048643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	77	276	0	ENST00000265849.7:c.8G>C	p.Arg3Pro	p.R3P	ENST00000265849	NM_000535.5	3	cGa/cCa																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3799638	3799638	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	51	297	0	ENST00000262367.5:c.3826G>C	p.Asp1276His	p.D1276H	ENST00000262367	NM_004380.2	1276	Gac/Cac																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36231773	36231773	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	38	269	0	ENST00000300305.3:c.611G>C	p.Arg204Pro	p.R204P	ENST00000300305		204	cGa/cCa																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66766051	66766051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	80	351	1	ENST00000374690.3:c.1063G>A	p.Glu355Lys	p.E355K	ENST00000374690	NM_000044.3	355	Gag/Aag																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100630140	100630140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	17	391	0	ENST00000308731.7:c.133G>A	p.Glu45Lys	p.E45K	ENST00000308731	NM_000061.2	45	Gaa/Aaa																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176637163	176637163	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	65	292	0	ENST00000439151.2:c.1763A>C	p.Asp588Ala	p.D588A	ENST00000439151	NM_022455.4	588	gAc/gCc																																												NEWRECORD																																		
NSD1	0	MSKCC	GRCh37	5	176673744	176673744	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	57	481	1	ENST00000439151.2:c.4444C>T	p.Gln1482Ter	p.Q1482*	ENST00000439151	NM_022455.4	1482	Cag/Tag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574002	7574002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	400	477	0	ENST00000269305.4:c.1025G>C	p.Arg342Pro	p.R342P	ENST00000269305	NM_001126112.2	342	cGa/cCa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29546036	29546037	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0003528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	192	311	1	ENST00000358273.4:c.1541_1542delAG	p.Gln514ArgfsTer43	p.Q514Rfs*43	ENST00000358273	NM_001042492.2	514	cAG/c																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0013759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	161	641	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa																																												NEWRECORD																																		
ALOX12B	0	MSKCC	GRCh37	17	7980435	7980435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	174	739	0	ENST00000319144.4:c.1148C>T	p.Thr383Met	p.T383M	ENST00000319144	NM_001139.2	383	aCg/aTg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27092780	27092780	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	182	843	0	ENST00000324856.7:c.2802del	p.Asn935IlefsTer6	p.N935Ifs*6	ENST00000324856	NM_006015.4	934	aTt/at																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151902197	151902197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	140	464	0	ENST00000262189.6:c.3955G>A	p.Asp1319Asn	p.D1319N	ENST00000262189	NM_170606.2	1319	Gat/Aat																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578515	7578515	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	749	381	0	ENST00000269305.4:c.415A>T	p.Lys139Ter	p.K139*	ENST00000269305	NM_001126112.2	139	Aag/Tag																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117679087	117679087	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	514	330	0	ENST00000368508.3:c.3734C>A	p.Ser1245Ter	p.S1245*	ENST00000368508	NM_002944.2	1245	tCa/tAa																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729700	41729700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	1028	697	1	ENST00000242208.4:c.829G>T	p.Gly277Cys	p.G277C	ENST00000242208	NM_002192.2	277	Ggt/Tgt																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148512084	148512084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	638	351	0	ENST00000320356.2:c.1594C>T	p.Arg532Trp	p.R532W	ENST00000320356	NM_004456.4	532	Cgg/Tgg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49033823	49033823	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0011403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	586	399	0	ENST00000267163.4:c.1961-1G>T		p.X654_splice	ENST00000267163	NM_000321.2	654																																													NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18272849	18272849	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2135	307	474	0	ENST00000222254.8:c.889G>C	p.Val297Leu	p.V297L	ENST00000222254	NM_005027.3	297	Gtt/Ctt																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	86	281	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0003609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	32	86	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112179765	112179765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	80	261	0	ENST00000257430.4:c.8474C>T	p.Ser2825Phe	p.S2825F	ENST00000257430	NM_000038.5	2825	tCc/tTc																																												NEWRECORD																																		
RAD52	0	MSKCC	GRCh37	12	1025569	1025569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	33	365	0	ENST00000358495.3:c.806G>T	p.Arg269Leu	p.R269L	ENST00000358495	NM_134424.2	269	cGg/cTg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3781255	3781255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	82	284	0	ENST00000262367.5:c.5110G>T	p.Val1704Phe	p.V1704F	ENST00000262367	NM_004380.2	1704	Gtc/Ttc																																												NEWRECORD																																		
MAP2K2	0	MSKCC	GRCh37	19	4117529	4117529	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	21	81	0	ENST00000262948.5:c.191T>A	p.Val64Asp	p.V64D	ENST00000262948	NM_030662.3	64	gTc/gAc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			347	70	481	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88476307	88476307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	127	645	1	ENST00000360948.2:c.1825G>A	p.Asp609Asn	p.D609N	ENST00000360948	NM_001012338.2	609	Gat/Aat																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112173803	112173803	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			175	37	254	0	ENST00000257430.4:c.2512A>T	p.Arg838Ter	p.R838*	ENST00000257430	NM_000038.5	838	Aga/Tga																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40944419	40944419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	94	481	0	ENST00000373198.4:c.2083C>T	p.Leu695Phe	p.L695F	ENST00000373198	NM_133170.3	695	Ctc/Ttc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55131142	55131142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	50	425	0	ENST00000257290.5:c.685G>A	p.Glu229Lys	p.E229K	ENST00000257290	NM_006206.4	229	Gaa/Aaa																																												NEWRECORD																																		
NUP93	0	MSKCC	GRCh37	16	56868132	56868132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	59	433	1	ENST00000308159.5:c.1630C>T	p.Pro544Ser	p.P544S	ENST00000308159	NM_014669.4	544	Cca/Tca																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189584548	189584548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	39	428	1	ENST00000264731.3:c.844G>A	p.Gly282Arg	p.G282R	ENST00000264731	NM_003722.4	282	Gga/Aga																																												NEWRECORD																																		
KDR	3791	MSKCC	GRCh37	4	55955863	55955863	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs868047715		P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	70	397	1	ENST00000263923.4:c.3299C>T	p.Ser1100Phe	p.S1100F	ENST00000263923	NM_002253.2	1100	tCc/tTc																																												NEWRECORD																																		
CBL	0	MSKCC	GRCh37	11	119148875	119148876	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			186	47	231	1	ENST00000264033.4:c.1096-1_1096delGGinsAA		p.X366_splice	ENST00000264033	NM_005188.3	366																																													NEWRECORD																																		
XIAP	0	MSKCC	GRCh37	X	123020155	123020155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	145	657	2	ENST00000355640.3:c.643C>T	p.Arg215Cys	p.R215C	ENST00000355640		215	Cgt/Tgt																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101517	27101517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	124	724	0	ENST00000324856.7:c.4799C>T	p.Ser1600Phe	p.S1600F	ENST00000324856	NM_006015.4	1600	tCt/tTt																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120468327	120468327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	157	464	0	ENST00000256646.2:c.4112C>T	p.Pro1371Leu	p.P1371L	ENST00000256646	NM_024408.3	1371	cCc/cTc																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18656233	18656233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	38	392	1	ENST00000266497.5:c.2912C>T	p.Pro971Leu	p.P971L	ENST00000266497		971	cCt/cTt																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103520573	103520573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	25	289	0	ENST00000355739.4:c.2644C>T	p.Pro882Ser	p.P882S	ENST00000355739	NM_000123.3	882	Cct/Tct																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99465634	99465634	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	78	342	0	ENST00000268035.6:c.2459T>A	p.Phe820Tyr	p.F820Y	ENST00000268035	NM_000875.3	820	tTc/tAc																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99486228	99486228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			474	237	536	0	ENST00000268035.6:c.3534G>T	p.Trp1178Cys	p.W1178C	ENST00000268035	NM_000875.3	1178	tgG/tgT																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81953199	81953199	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	95	305	0	ENST00000359376.3:c.2165A>C	p.Lys722Thr	p.K722T	ENST00000359376	NM_002661.3	722	aAg/aCg																																												NEWRECORD																																		
ANKRD11	0	MSKCC	GRCh37	16	89347747	89347747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			282	95	403	0	ENST00000301030.4:c.5203C>T	p.Leu1735Phe	p.L1735F	ENST00000301030	NM_001256183.1	1735	Ctc/Ttc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577105	7577106	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	140	668	3	ENST00000269305.4:c.832_833delCCinsGT	p.Pro278Val	p.P278V	ENST00000269305	NM_001126112.2	278	CCt/GTt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29559101	29559101	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			127	79	146	0	ENST00000358273.4:c.3208C>T	p.Gln1070Ter	p.Q1070*	ENST00000358273	NM_001042492.2	1070	Cag/Tag																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29585490	29585490	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			165	77	256	0	ENST00000358273.4:c.4302A>T	p.Arg1434Ser	p.R1434S	ENST00000358273	NM_001042492.2	1434	agA/agT																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78931513	78931513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	102	423	0	ENST00000306801.3:c.3460C>T	p.Arg1154Cys	p.R1154C	ENST00000306801	NM_020761.2	1154	Cgt/Tgt																																												NEWRECORD																																		
PIK3R2	0	MSKCC	GRCh37	19	18271882	18271882	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	132	667	0	ENST00000222254.8:c.485T>C	p.Val162Ala	p.V162A	ENST00000222254	NM_005027.3	162	gTg/gCg																																												NEWRECORD																																		
ALK	0	MSKCC	GRCh37	2	29519831	29519831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	47	595	1	ENST00000389048.3:c.1740G>A	p.Met580Ile	p.M580I	ENST00000389048	NM_004304.4	580	atG/atA																																												NEWRECORD																																		
EPAS1	0	MSKCC	GRCh37	2	46583371	46583372	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	49	456	1	ENST00000263734.3:c.299_300delCCinsTT	p.Ala100Val	p.A100V	ENST00000263734	NM_001430.4	100	gCC/gTT																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41306631	41306631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	112	627	0	ENST00000373198.4:c.1028C>T	p.Pro343Leu	p.P343L	ENST00000373198	NM_133170.3	343	cCc/cTc																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39755556	39755557	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	96	344	0	ENST00000288319.7:c.1208_1209delCCinsTT	p.Pro403Leu	p.P403L	ENST00000288319	NM_182918.3	403	cCC/cTT																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39755756	39755756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	25	387	3	ENST00000288319.7:c.1009G>A	p.Gly337Arg	p.G337R	ENST00000288319	NM_182918.3	337	Ggg/Agg																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41566468	41566468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	58	415	0	ENST00000263253.7:c.4345C>T	p.His1449Tyr	p.H1449Y	ENST00000263253	NM_001429.3	1449	Cat/Tat																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56152548	56152548	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	90	282	0	ENST00000399503.3:c.604T>G	p.Leu202Val	p.L202V	ENST00000399503	NM_005921.1	202	Ttg/Gtg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112154991	112154992	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	62	514	1	ENST00000257430.4:c.1262_1263delGGinsAA	p.Trp421Ter	p.W421*	ENST00000257430	NM_000038.5	421	tGG/tAA																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149497272	149497272	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201061735		P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			643	85	670	0	ENST00000261799.4:c.3046G>A	p.Glu1016Lys	p.E1016K	ENST00000261799	NM_002609.3	1016	Gag/Aag																																												NEWRECORD																																		
FGFR4	0	MSKCC	GRCh37	5	176520411	176520411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			553	152	645	0	ENST00000292408.4:c.1256C>T	p.Ser419Phe	p.S419F	ENST00000292408	NM_213647.1	419	tCc/tTc																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32190843	32190843	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	114	754	0	ENST00000375023.3:c.94C>T	p.Pro32Ser	p.P32S	ENST00000375023	NM_004557.3	32	Cca/Tca																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94066550	94066550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	58	325	0	ENST00000369303.4:c.1209G>A	p.Met403Ile	p.M403I	ENST00000369303	NM_004440.3	403	atG/atA																																												NEWRECORD																																		
ETV1	0	MSKCC	GRCh37	7	13946076	13946076	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	72	364	0	ENST00000405192.2:c.1020T>G	p.Phe340Leu	p.F340L	ENST00000405192	NM_001163147.1	340	ttT/ttG																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8492909	8492909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	57	409	2	ENST00000356435.5:c.2420G>A	p.Gly807Glu	p.G807E	ENST00000356435		807	gGa/gAa																																												NEWRECORD																																		
TRAF2	0	MSKCC	GRCh37	9	139815563	139815563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	240	520	0	ENST00000247668.2:c.1034T>C	p.Met345Thr	p.M345T	ENST00000247668	NM_021138.3	345	aTg/aCg																																												NEWRECORD																																		
BCOR	0	MSKCC	GRCh37	X	39932903	39932903	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			306	80	403	0	ENST00000378444.4:c.1696C>A	p.Arg566Ser	p.R566S	ENST00000378444	NM_001123385.1	566	Cgc/Agc																																												NEWRECORD																																		
AR	0	MSKCC	GRCh37	X	66863171	66863171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	47	489	0	ENST00000374690.3:c.1690G>A	p.Gly564Arg	p.G564R	ENST00000374690	NM_000044.3	564	Gga/Aga																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76854897	76854897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	51	596	0	ENST00000373344.5:c.5939C>T	p.Ser1980Phe	p.S1980F	ENST00000373344	NM_000489.3	1980	tCt/tTt																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76889101	76889101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	96	425	0	ENST00000373344.5:c.4909G>A	p.Glu1637Lys	p.E1637K	ENST00000373344	NM_000489.3	1637	Gaa/Aaa																																												NEWRECORD																																		
INPP4A	0	MSKCC	GRCh37	2	99154369	99154369	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	37	441	0	ENST00000074304.5:c.511T>C	p.Trp171Arg	p.W171R	ENST00000074304	NM_001134224.1	171	Tgg/Cgg																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10252808	10252808	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	102	543	0	ENST00000340748.4:c.3157T>A	p.Phe1053Ile	p.F1053I	ENST00000340748		1053	Ttc/Atc																																												NEWRECORD																																		
CARM1	0	MSKCC	GRCh37	19	11018750	11018750	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014227-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	75	741	2	ENST00000327064.4:c.382C>T	p.Arg128Trp	p.R128W	ENST00000327064	NM_199141.1	128	Cgg/Tgg																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	48	451	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	26	404	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc																																												NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106508805	106508805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	84	480	1	ENST00000359195.3:c.799G>A	p.Glu267Lys	p.E267K	ENST00000359195	NM_002649.2	267	Gaa/Aaa																																												NEWRECORD																																		
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	66	614	4	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102195488	102195488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1310	71	946	0	ENST00000263464.3:c.248C>G	p.Thr83Ser	p.T83S	ENST00000263464	NM_001165.4	83	aCt/aGt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118392718	118392718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	68	599	0	ENST00000534358.1:c.11750A>G	p.Tyr3917Cys	p.Y3917C	ENST00000534358	NM_005933.3	3917	tAt/tGt																																												NEWRECORD																																		
ERBB3	0	MSKCC	GRCh37	12	56490853	56490853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	80	573	0	ENST00000267101.3:c.2299G>A	p.Asp767Asn	p.D767N	ENST00000267101	NM_001982.3	767	Gac/Aac																																												NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10188196	10188217	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGGTCACCTTTGGCTCTTCAGA	AGGTCACCTTTGGCTCTTCAGA	-			P-0006762-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			81	43	431	0	ENST00000256474.2:c.341-2_360del		p.X114_splice	ENST00000256474	NM_000551.3	114																																													NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135781079	135781079	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006762-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			134	46	941	0	ENST00000298552.3:c.1886del	p.Lys629ArgfsTer24	p.K629Rfs*24	ENST00000298552	NM_001162426.1	629	aAg/ag																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117647545	117647545	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006762-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			86	39	837	0	ENST00000368508.3:c.5399A>T	p.Asn1800Ile	p.N1800I	ENST00000368508	NM_002944.2	1800	aAt/aTt																																												NEWRECORD																																		
MGA	0	MSKCC	GRCh37	15	42005364	42005386	+	frameshift_variant	Frame_Shift_Del	DEL	AAACCTATCCACACAATCATAAG	AAACCTATCCACACAATCATAAG	-			P-0006762-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			98	42	792	0	ENST00000219905.7:c.3100_3122del	p.Lys1034GlufsTer9	p.K1034Efs*9	ENST00000219905	NM_001164273.1	1034	AAACCTATCCACACAATCATAAGg/g																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	260	356	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48942685	48942685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	446	460	0	ENST00000267163.4:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000267163	NM_000321.2	358	Cga/Tga																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52442534	52442534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	159	334	0	ENST00000460680.1:c.211G>A	p.Val71Met	p.V71M	ENST00000460680	NM_004656.3	71	Gtg/Atg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1260635	1260635	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	31	454	0	ENST00000310581.5:c.2924T>C	p.Phe975Ser	p.F975S	ENST00000310581	NM_198253.2	975	tTt/tCt																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002688-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	25	443	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
RAC1	0	MSKCC	GRCh37	7	6414401	6414401	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0002688-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			195	18	51	0	ENST00000356142.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000356142	NM_018890.3	12	gGa/gTa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	115	606	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307																																													NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48941657	48941657	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	232	716	0	ENST00000267163.4:c.967G>T	p.Glu323Ter	p.E323*	ENST00000267163	NM_000321.2	323	Gaa/Taa																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153332857	153332857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	48	804	0	ENST00000281708.4:c.99G>A	p.Met33Ile	p.M33I	ENST00000281708	NM_033632.3	33	atG/atA																																												NEWRECORD																																		
RAD21	0	MSKCC	GRCh37	8	117878937	117878937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	206	1199	0	ENST00000297338.2:c.32G>C	p.Arg11Thr	p.R11T	ENST00000297338	NM_006265.2	11	aGa/aCa																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98229487	98229487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	88	1000	0	ENST00000331920.6:c.2471G>A	p.Arg824Lys	p.R824K	ENST00000331920	NM_000264.3	824	aGg/aAg																																												NEWRECORD																																		
EGFL7	0	MSKCC	GRCh37	9	139566418	139566418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	44	559	0	ENST00000308874.7:c.677C>T	p.Ser226Leu	p.S226L	ENST00000308874		226	tCg/tTg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333845	70333845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	58	830	0	ENST00000373644.4:c.1750G>C	p.Glu584Gln	p.E584Q	ENST00000373644	NM_030625.2	584	Gaa/Caa																																												NEWRECORD																																		
MYOD1	0	MSKCC	GRCh37	11	17741558	17741558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	44	371	0	ENST00000250003.3:c.229G>A	p.Glu77Lys	p.E77K	ENST00000250003	NM_002478.4	77	Gag/Aag																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32911658	32911658	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1422	298	1427	1	ENST00000380152.3:c.3166C>G	p.Gln1056Glu	p.Q1056E	ENST00000380152		1056	Caa/Gaa																																												NEWRECORD																																		
NFKBIA	0	MSKCC	GRCh37	14	35873835	35873835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	56	414	0	ENST00000216797.5:c.16G>A	p.Glu6Lys	p.E6K	ENST00000216797	NM_020529.2	6	Gag/Aag																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67663362	67663362	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	51	754	0	ENST00000264010.4:c.1763G>C	p.Gly588Ala	p.G588A	ENST00000264010	NM_006565.3	588	gGa/gCa																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29490348	29490348	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	91	844	0	ENST00000358273.4:c.433C>G	p.Leu145Val	p.L145V	ENST00000358273	NM_001042492.2	145	Ctc/Gtc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40730799	40730799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	61	616	0	ENST00000373198.4:c.3736G>A	p.Glu1246Lys	p.E1246K	ENST00000373198	NM_133170.3	1246	Gaa/Aaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	129	297	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt																																												NEWRECORD																																		
MST1	0	MSKCC	GRCh37	3	49725198	49725198	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	11	136	2	ENST00000449682.2:c.227C>T	p.Pro76Leu	p.P76L	ENST00000449682	NM_020998.3	76	cCc/cTc																																												NEWRECORD																																		
MLL3	0	MSKCC	GRCh37	7	151848043	151848043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	24	375	0	ENST00000262189.6:c.12716G>A	p.Ser4239Asn	p.S4239N	ENST00000262189	NM_170606.2	4239	aGt/aAt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577073	7577073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	296	504	0	ENST00000269305.4:c.865C>T	p.Leu289Phe	p.L289F	ENST00000269305	NM_001126112.2	289	Ctc/Ttc																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576826	7576867	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATA	TTGATAAGAGGTCCCAAGACTTAGTACCTGAAGGGTGAAATA	-			P-0003049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	104	283	0	ENST00000269305.4:c.979_993+27del		p.X327_splice	ENST00000269305	NM_001126112.2	327																																													NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	85	441	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5245976	5245976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	160	469	0	ENST00000357368.4:c.799G>A	p.Val267Met	p.V267M	ENST00000357368	NM_002850.3	267	Gtg/Atg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0003046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	191	477	0	ENST00000269305.4:c.994-2A>G		p.X332_splice	ENST00000269305	NM_001126112.2	332																																													NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206651171	206651171	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	103	265	0	ENST00000367120.3:c.781T>A	p.Tyr261Asn	p.Y261N	ENST00000367120	NM_014002.3	261	Tac/Aac																																												NEWRECORD																																		
DNMT3A	0	MSKCC	GRCh37	2	25468901	25468901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	120	410	2	ENST00000264709.3:c.1462C>T	p.Arg488Trp	p.R488W	ENST00000264709	NM_175629.2	488	Cgg/Tgg																																												NEWRECORD																																		
BMPR1A	0	MSKCC	GRCh37	10	88681314	88681314	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	75	287	2	ENST00000372037.3:c.1204G>T	p.Val402Leu	p.V402L	ENST00000372037	NM_004329.2	402	Gtg/Ttg																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48573563	48573564	+	stop_gained	Nonsense_Mutation	DNP	GA	GA	TT			P-0003046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	61	401	0	ENST00000342988.3:c.147_148delinsTT	p.Glu49_Lys50delinsAspTer	p.E49_K50delinsD*	ENST00000342988	NM_005359.5	49	gaGAaa/gaTTaa																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11136980	11136980	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	147	381	0	ENST00000344626.4:c.3173C>G	p.Ser1058Cys	p.S1058C	ENST00000344626	NM_003072.3	1058	tCc/tGc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48947540	48947540	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010836-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			339	57	334	0	ENST00000267163.4:c.1128-1G>A		p.X376_splice	ENST00000267163	NM_000321.2	376																																													NEWRECORD																																		
PALB2	0	MSKCC	GRCh37	16	23635400	23635400	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010836-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	124	494	0	ENST00000261584.4:c.2764A>C	p.Ile922Leu	p.I922L	ENST00000261584	NM_024675.3	922	Ata/Cta																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116411882	116411896	+	splice_region_variant,intron_variant	Splice_Region	DEL	TTTCTTTCTCTCTGT	TTTCTTTCTCTCTGT	-			P-0010836-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			878	226	758	0	ENST00000397752.3:c.2888-18_2888-4del		p.X963_splice	ENST00000397752	NM_000245.2	963																																													NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0003063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	271	414	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
FLT4	0	MSKCC	GRCh37	5	180048116	180048116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	114	344	0	ENST00000261937.6:c.2157G>C	p.Glu719Asp	p.E719D	ENST00000261937	NM_182925.4	719	gaG/gaC																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41548222	41548222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	130	284	0	ENST00000263253.7:c.3010G>C	p.Asp1004His	p.D1004H	ENST00000263253	NM_001429.3	1004	Gac/Cac																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212295795	212295795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	204	633	1	ENST00000342788.4:c.2518G>A	p.Val840Ile	p.V840I	ENST00000342788	NM_005235.2	840	Gtt/Att																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56168699	56168699	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			862	630	657	1	ENST00000399503.3:c.1553C>G	p.Ala518Gly	p.A518G	ENST00000399503	NM_005921.1	518	gCa/gGa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18715754	18715754	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			816	556	597	0	ENST00000266497.5:c.3585A>T	p.Glu1195Asp	p.E1195D	ENST00000266497		1195	gaA/gaT																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133202301	133202301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	142	541	0	ENST00000320574.5:c.6587C>T	p.Ser2196Phe	p.S2196F	ENST00000320574	NM_006231.2	2196	tCc/tTc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76874353	76874353	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	262	742	0	ENST00000373344.5:c.5369C>G	p.Ala1790Gly	p.A1790G	ENST00000373344	NM_000489.3	1790	gCa/gGa																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55970980	55971013	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTTCTTGCAAACAGGTGTGGGCAACTCTCCCA	AAGTTCTTGCAAACAGGTGTGGGCAACTCTCCCA	-			P-0001780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	68	706	0	ENST00000263923.4:c.1784_1817del	p.Val595GlyfsTer7	p.V595Gfs*7	ENST00000263923	NM_002253.2	595	gTGGGAGAGTTGCCCACACCTGTTTGCAAGAACTTg/gg																																												NEWRECORD																																		
CDC73	0	MSKCC	GRCh37	1	193202134	193202134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	41	273	0	ENST00000367435.3:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000367435	NM_024529.4	389	tCa/tTa																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48951171	48951171	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0014906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	44	432	1	ENST00000267163.4:c.1332+1G>T		p.X444_splice	ENST00000267163	NM_000321.2	444																																													NEWRECORD																																		
BCL6	0	MSKCC	GRCh37	3	187447079	187447079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014906-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	80	790	0	ENST00000232014.4:c.1114G>T	p.Ala372Ser	p.A372S	ENST00000232014	NM_001130845.1	372	Gcc/Tcc																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116397489	116397489	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0004878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	100	337	0	ENST00000397752.3:c.1863-2A>G		p.X621_splice	ENST00000397752	NM_000245.2	621																																													NEWRECORD																																		
MYD88	0	MSKCC	GRCh37	3	38180351	38180351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	85	500	0	ENST00000396334.3:c.199A>G	p.Met67Val	p.M67V	ENST00000396334	NM_002468.4	67	Atg/Gtg																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112017552	112017552	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	264	527	0	ENST00000368678.4:c.961G>C	p.Asp321His	p.D321H	ENST00000368678		321	Gac/Cac																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108186815	108186815	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	283	333	0	ENST00000278616.4:c.6173C>G	p.Ser2058Ter	p.S2058*	ENST00000278616	NM_000051.3	2058	tCa/tGa																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67645157	67645157	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	74	364	0	ENST00000264010.4:c.422A>G	p.Glu141Gly	p.E141G	ENST00000264010	NM_006565.3	141	gAa/gGa																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78420999	78420999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	59	210	1	ENST00000370768.2:c.1721C>T	p.Pro574Leu	p.P574L	ENST00000370768	NM_003902.3	574	cCa/cTa																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604747	48604747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	36	296	0	ENST00000342988.3:c.1569C>G	p.Cys523Trp	p.C523W	ENST00000342988	NM_005359.5	523	tgC/tgG																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5212043	5212043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	66	470	0	ENST00000357368.4:c.4988C>G	p.Ala1663Gly	p.A1663G	ENST00000357368	NM_002850.3	1663	gCc/gGc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40911151	40911151	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	58	344	0	ENST00000373198.4:c.2154C>A	p.Asn718Lys	p.N718K	ENST00000373198	NM_133170.3	718	aaC/aaA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	72	231	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa																																												NEWRECORD																																		
RYBP	0	MSKCC	GRCh37	3	72495741	72495741	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	166	461	0	ENST00000477973.2:c.329G>T	p.Glu111Ter	p.E111*	ENST00000477973	NM_012234.5	111	Gaa/Taa																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1434	483	1072	3	ENST00000263967.3:c.316G>T	p.Gly106Cys	p.G106C	ENST00000263967	NM_006218.2	106	Ggc/Tgc																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185191035	185191035	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	241	466	0	ENST00000265026.3:c.1916A>C	p.Gln639Pro	p.Q639P	ENST00000265026	NM_004721.4	639	cAg/cCg																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32187989	32187989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	195	495	0	ENST00000375023.3:c.1232C>G	p.Pro411Arg	p.P411R	ENST00000375023	NM_004557.3	411	cCc/cGc																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94066608	94066608	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	322	987	0	ENST00000369303.4:c.1151G>T	p.Ser384Ile	p.S384I	ENST00000369303	NM_004440.3	384	aGt/aTt																																												NEWRECORD																																		
EED	0	MSKCC	GRCh37	11	85988048	85988048	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	167	418	0	ENST00000263360.6:c.993G>A	p.Trp331Ter	p.W331*	ENST00000263360	NM_003797.3	331	tgG/tgA																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89816138	89816138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	99	501	0	ENST00000389301.3:c.3239G>T	p.Arg1080Leu	p.R1080L	ENST00000389301	NM_000135.2	1080	cGg/cTg																																												NEWRECORD																																		
PIK3C3	0	MSKCC	GRCh37	18	39550394	39550394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	114	380	1	ENST00000262039.4:c.505G>A	p.Glu169Lys	p.E169K	ENST00000262039	NM_002647.2	169	Gaa/Aaa																																												NEWRECORD																																		
CCNE1	0	MSKCC	GRCh37	19	30313152	30313152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1511	260	971	1	ENST00000262643.3:c.846G>T	p.Leu282Phe	p.L282F	ENST00000262643	NM_001238.2	282	ttG/ttT																																												NEWRECORD																																		
H3F3B	0	MSKCC	GRCh37	17	73775252	73775252	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	172	738	0	ENST00000254810.4:c.4del	p.Ala2ProfsTer35	p.A2Pfs*35	ENST00000254810	NM_005324.3	2	Gcc/cc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	67	491	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	122	887	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga																																												NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	1147	752	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35871202	35871202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200772681		P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	37	469	0	ENST00000303115.3:c.424G>A	p.Gly142Arg	p.G142R	ENST00000303115	NM_002185.3	142	Gga/Aga																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46242662	46242662	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	65	447	1	ENST00000334344.6:c.1624C>T	p.Arg542Ter	p.R542*	ENST00000334344	NM_152641.2	542	Cga/Tga																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553249	106553249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	100	624	0	ENST00000369096.4:c.1214C>T	p.Ser405Leu	p.S405L	ENST00000369096	NM_001198.3	405	tCg/tTg																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118344593	118344593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	89	1261	0	ENST00000534358.1:c.2719C>T	p.Pro907Ser	p.P907S	ENST00000534358	NM_005933.3	907	Cct/Tct																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187540164	187540164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	46	872	0	ENST00000441802.2:c.7576C>T	p.His2526Tyr	p.H2526Y	ENST00000441802	NM_005245.3	2526	Cac/Tac																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32181543	32181543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	39	662	0	ENST00000375023.3:c.2242C>T	p.Pro748Ser	p.P748S	ENST00000375023	NM_004557.3	748	Cct/Tct																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117704646	117704646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	78	538	0	ENST00000368508.3:c.2330G>A	p.Gly777Glu	p.G777E	ENST00000368508	NM_002944.2	777	gGa/gAa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8486082	8486082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	83	811	1	ENST00000356435.5:c.2735C>T	p.Ser912Phe	p.S912F	ENST00000356435		912	tCc/tTc																																												NEWRECORD																																		
SUFU	0	MSKCC	GRCh37	10	104353479	104353479	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	25	445	0	ENST00000369902.3:c.683+1G>A		p.X228_splice	ENST00000369902	NM_016169.3	228																																													NEWRECORD																																		
SDHAF2	0	MSKCC	GRCh37	11	61205188	61205188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	64	687	0	ENST00000301761.2:c.128C>T	p.Ser43Phe	p.S43F	ENST00000301761	NM_017841.2	43	tCc/tTc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108128209	108128209	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	47	501	0	ENST00000278616.4:c.2252C>T	p.Ser751Phe	p.S751F	ENST00000278616	NM_000051.3	751	tCt/tTt																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9923494	9923494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	93	577	0	ENST00000330684.3:c.1793C>T	p.Ser598Phe	p.S598F	ENST00000330684	NM_001134407.1	598	tCt/tTt																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40727132	40727132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	87	719	0	ENST00000373198.4:c.3832G>A	p.Asp1278Asn	p.D1278N	ENST00000373198	NM_133170.3	1278	Gac/Aac																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	135	234	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	189	425	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0013873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	291	426	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc																																												NEWRECORD																																		
TSC1	0	MSKCC	GRCh37	9	135797221	135797222	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	243	559	0	ENST00000298552.3:c.647_648del	p.Phe216Ter	p.F216*	ENST00000298552	NM_001162426.1	216	tTT/t																																												NEWRECORD																																		
NOTCH1	0	MSKCC	GRCh37	9	139397781	139397781	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0013873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	88	291	0	ENST00000277541.6:c.5020T>C	p.Ser1674Pro	p.S1674P	ENST00000277541	NM_017617.3	1674	Tcc/Ccc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11297958	11297958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	171	652	0	ENST00000361445.4:c.2150G>A	p.Arg717Gln	p.R717Q	ENST00000361445	NM_004958.3	717	cGa/cAa																																												NEWRECORD																																		
NEGR1	0	MSKCC	GRCh37	1	71873250	71873250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	99	478	0	ENST00000357731.5:c.944C>T	p.Pro315Leu	p.P315L	ENST00000357731	NM_173808.2	315	cCa/cTa																																												NEWRECORD																																		
CSDE1	0	MSKCC	GRCh37	1	115275395	115275395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	91	567	2	ENST00000438362.2:c.1018C>T	p.Pro340Ser	p.P340S	ENST00000438362	NM_001242891.1	340	Cct/Tct																																												NEWRECORD																																		
FAM46C	0	MSKCC	GRCh37	1	118165603	118165603	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148397151		P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	90	409	0	ENST00000369448.3:c.113G>A	p.Arg38Gln	p.R38Q	ENST00000369448	NM_017709.3	38	cGa/cAa																																												NEWRECORD																																		
FAM46C	0	MSKCC	GRCh37	1	118166202	118166202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			375	206	479	0	ENST00000369448.3:c.712G>A	p.Glu238Lys	p.E238K	ENST00000369448	NM_017709.3	238	Gaa/Aaa																																												NEWRECORD																																		
NTRK1	0	MSKCC	GRCh37	1	156844401	156844401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	478	924	0	ENST00000524377.1:c.1234G>A	p.Asp412Asn	p.D412N	ENST00000524377	NM_002529.3	412	Gac/Aac																																												NEWRECORD																																		
ELF3	0	MSKCC	GRCh37	1	201982370	201982371	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			862	175	896	3	ENST00000359651.3:c.749_750delCCinsTT	p.Pro250Leu	p.P250L	ENST00000359651		250	cCC/cTT																																												NEWRECORD																																		
MDM4	0	MSKCC	GRCh37	1	204513703	204513703	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	84	367	0	ENST00000367182.3:c.713T>C	p.Leu238Ser	p.L238S	ENST00000367182	NM_001278516.1	238	tTg/tCg																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241667404	241667404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	277	651	0	ENST00000366560.3:c.1046C>T	p.Pro349Leu	p.P349L	ENST00000366560	NM_000143.3	349	cCt/cTt																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89692872	89692872	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	69	344	0	ENST00000371953.3:c.356T>C	p.Val119Ala	p.V119A	ENST00000371953	NM_000314.4	119	gTt/gCt																																												NEWRECORD																																		
FGFR2	0	MSKCC	GRCh37	10	123298154	123298154	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	114	643	1	ENST00000358487.5:c.700G>T	p.Glu234Ter	p.E234*	ENST00000358487	NM_000141.4	234	Gag/Tag																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64135677	64135677	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	224	830	1	ENST00000334205.4:c.1145C>T	p.Pro382Leu	p.P382L	ENST00000334205	NM_003942.2	382	cCt/cTt																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64137722	64137722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	182	910	2	ENST00000334205.4:c.1823C>T	p.Pro608Leu	p.P608L	ENST00000334205	NM_003942.2	608	cCc/cTc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	82	479	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118355603	118355604	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			264	96	637	1	ENST00000534358.1:c.4245_4246delGGinsAA	p.TrpGlu1415TerLys	p.WE1415*K	ENST00000534358	NM_005933.3	1415	tgGGag/tgAAag																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	404956	404956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	102	482	0	ENST00000399788.2:c.4238C>T	p.Ser1413Phe	p.S1413F	ENST00000399788	NM_001042603.1	1413	tCt/tTt																																												NEWRECORD																																		
CCND2	0	MSKCC	GRCh37	12	4398050	4398050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			478	159	667	0	ENST00000261254.3:c.614G>A	p.Gly205Glu	p.G205E	ENST00000261254	NM_001759.3	205	gGa/gAa																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18552630	18552630	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200787716		P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			317	76	527	0	ENST00000266497.5:c.2041C>T	p.Arg681Cys	p.R681C	ENST00000266497		681	Cgc/Tgc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245103	46245103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			422	157	535	0	ENST00000334344.6:c.3197C>T	p.Pro1066Leu	p.P1066L	ENST00000334344	NM_152641.2	1066	cCg/cTg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46246102	46246102	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	119	518	0	ENST00000334344.6:c.4196T>A	p.Leu1399Ter	p.L1399*	ENST00000334344	NM_152641.2	1399	tTa/tAa																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49431409	49431409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	240	613	0	ENST00000301067.7:c.9730G>A	p.Glu3244Lys	p.E3244K	ENST00000301067	NM_003482.3	3244	Gag/Aag																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57864636	57864636	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	195	772	1	ENST00000228682.2:c.2113G>A	p.Glu705Lys	p.E705K	ENST00000228682	NM_005269.2	705	Gaa/Aaa																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102811643	102811643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	171	771	2	ENST00000307046.8:c.541G>A	p.Glu181Lys	p.E181K	ENST00000307046	NM_001111285.1	181	Gag/Aag																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29005411	29005412	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			410	42	475	0	ENST00000282397.4:c.849_850delCCinsTT	p.Gln284Ter	p.Q284*	ENST00000282397	NM_002019.4	283	gaCCaa/gaTTaa																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32953482	32953483	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	218	498	1	ENST00000380152.3:c.8783_8784delCCinsTT	p.Ala2928Val	p.A2928V	ENST00000380152		2928	gCC/gTT																																												NEWRECORD																																		
RAD51B	0	MSKCC	GRCh37	14	68353922	68353922	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	163	435	1	ENST00000487270.1:c.756+1G>A		p.X252_splice	ENST00000487270	NM_133509.3	252																																													NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2108820	2108821	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	528	796	1	ENST00000219476.3:c.921_922delCCinsTT	p.Arg308Trp	p.R308W	ENST00000219476	NM_000548.3	307	caCCgg/caTTgg																																												NEWRECORD																																		
TSC2	0	MSKCC	GRCh37	16	2113046	2113046	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	174	779	0	ENST00000219476.3:c.1435T>C	p.Phe479Leu	p.F479L	ENST00000219476	NM_000548.3	479	Ttc/Ctc																																												NEWRECORD																																		
TRAF7	0	MSKCC	GRCh37	16	2225558	2225558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			927	182	803	1	ENST00000326181.6:c.1561C>T	p.His521Tyr	p.H521Y	ENST00000326181	NM_032271.2	521	Cac/Tac																																												NEWRECORD																																		
SLX4	0	MSKCC	GRCh37	16	3658569	3658569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	295	749	0	ENST00000294008.3:c.397C>T	p.Pro133Ser	p.P133S	ENST00000294008	NM_032444.2	133	Ccg/Tcg																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857436	9857436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	229	538	0	ENST00000330684.3:c.3965G>A	p.Gly1322Glu	p.G1322E	ENST00000330684	NM_001134407.1	1322	gGa/gAa																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858016	9858016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	232	653	0	ENST00000330684.3:c.3385C>T	p.His1129Tyr	p.H1129Y	ENST00000330684	NM_001134407.1	1129	Cac/Tac																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858066	9858066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			650	142	657	0	ENST00000330684.3:c.3335C>T	p.Ser1112Phe	p.S1112F	ENST00000330684	NM_001134407.1	1112	tCc/tTc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10031901	10031901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	432	623	1	ENST00000330684.3:c.922G>A	p.Glu308Lys	p.E308K	ENST00000330684	NM_001134407.1	308	Gag/Aag																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10032408	10032408	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			249	137	308	0	ENST00000330684.3:c.415G>A	p.Asp139Asn	p.D139N	ENST00000330684	NM_001134407.1	139	Gat/Aat																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68857530	68857530	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	88	394	0	ENST00000261769.5:c.2164+1G>A		p.X722_splice	ENST00000261769	NM_004360.3	722																																													NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72984754	72984754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			485	154	665	0	ENST00000268489.5:c.2830C>G	p.Leu944Val	p.L944V	ENST00000268489	NM_006885.3	944	Ctc/Gtc																																												NEWRECORD																																		
ZFHX3	0	MSKCC	GRCh37	16	72993629	72993630	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	141	588	1	ENST00000268489.5:c.415_416delGGinsAA	p.Gly139Asn	p.G139N	ENST00000268489	NM_006885.3	139	GGc/AAc																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89805956	89805956	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	149	568	0	ENST00000389301.3:c.3940A>G	p.Arg1314Gly	p.R1314G	ENST00000389301	NM_000135.2	1314	Agg/Ggg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			764	180	782	0	ENST00000269305.4:c.857A>T	p.Glu286Val	p.E286V	ENST00000269305	NM_001126112.2	286	gAa/gTa																																												NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15950408	15950408	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	83	554	0	ENST00000268712.3:c.6537-1G>A		p.X2179_splice	ENST00000268712	NM_006311.3	2179																																													NEWRECORD																																		
NCOR1	0	MSKCC	GRCh37	17	15952196	15952196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	154	652	0	ENST00000268712.3:c.6499C>T	p.Leu2167Phe	p.L2167F	ENST00000268712	NM_006311.3	2167	Ctc/Ttc																																												NEWRECORD																																		
FLCN	0	MSKCC	GRCh37	17	17118401	17118401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	144	690	0	ENST00000285071.4:c.1436G>A	p.Gly479Asp	p.G479D	ENST00000285071	NM_144997.5	479	gGc/gAc																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29670136	29670136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	97	492	1	ENST00000358273.4:c.7172T>C	p.Val2391Ala	p.V2391A	ENST00000358273	NM_001042492.2	2391	gTt/gCt																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29683478	29683478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	125	432	0	ENST00000358273.4:c.7616G>A	p.Gly2539Glu	p.G2539E	ENST00000358273	NM_001042492.2	2539	gGa/gAa																																												NEWRECORD																																		
STAT3	0	MSKCC	GRCh37	17	40468852	40468852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			661	148	654	0	ENST00000264657.5:c.2212G>A	p.Gly738Arg	p.G738R	ENST00000264657	NM_139276.2	738	Gga/Aga																																												NEWRECORD																																		
AXIN2	0	MSKCC	GRCh37	17	63534462	63534462	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			904	177	662	0	ENST00000307078.5:c.1060-1G>A		p.X354_splice	ENST00000307078	NM_004655.3	354																																													NEWRECORD																																		
MALT1	0	MSKCC	GRCh37	18	56412913	56412913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			189	153	425	1	ENST00000348428.3:c.1927C>T	p.Pro643Ser	p.P643S	ENST00000348428	NM_006785.3	643	Cca/Tca																																												NEWRECORD																																		
MAP2K2	0	MSKCC	GRCh37	19	4101275	4101275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	350	662	1	ENST00000262948.5:c.532C>T	p.Leu178Phe	p.L178F	ENST00000262948	NM_030662.3	178	Ctc/Ttc																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7143092	7143093	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	115	656	0	ENST00000302850.5:c.2276_2277delGGinsAA	p.Arg759Gln	p.R759Q	ENST00000302850	NM_000208.2	759	cGG/cAA																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7174684	7174684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	362	712	1	ENST00000302850.5:c.1033G>A	p.Glu345Lys	p.E345K	ENST00000302850	NM_000208.2	345	Gag/Aag																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17950418	17950418	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	195	778	0	ENST00000458235.1:c.1309A>G	p.Thr437Ala	p.T437A	ENST00000458235	NM_000215.3	437	Acc/Gcc																																												NEWRECORD																																		
AXL	558	MSKCC	GRCh37	19	41744416	41744416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	371	833	0	ENST00000301178.4:c.1036G>A	p.Gly346Arg	p.G346R	ENST00000301178	NM_021913.4	346	Ggg/Agg																																												NEWRECORD																																		
ERCC3	0	MSKCC	GRCh37	2	128051268	128051268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	131	680	0	ENST00000285398.2:c.55T>C	p.Tyr19His	p.Y19H	ENST00000285398	NM_000122.1	19	Tat/Cat																																												NEWRECORD																																		
ACVR1	0	MSKCC	GRCh37	2	158594119	158594119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	184	538	1	ENST00000263640.3:c.1454G>A	p.Arg485Lys	p.R485K	ENST00000263640	NM_001105.4	485	aGa/aAa																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209106823	209106824	+	missense_variant	Missense_Mutation	DNP	TA	TA	AG			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	130	706	0	ENST00000345146.2:c.744_745delTAinsCT	p.Arg249Trp	p.R249W	ENST00000345146	NM_005896.2	248	caTAgg/caCTgg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212530082	212530082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	99	341	1	ENST00000342788.4:c.1837G>A	p.Glu613Lys	p.E613K	ENST00000342788	NM_005235.2	613	Gag/Aag																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9546835	9546835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	67	416	0	ENST00000353224.5:c.1187C>T	p.Ser396Phe	p.S396F	ENST00000353224	NM_177990.2	396	tCc/tTc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40739064	40739064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	133	631	3	ENST00000373198.4:c.3220G>A	p.Val1074Ile	p.V1074I	ENST00000373198	NM_133170.3	1074	Gtt/Att																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40739117	40739117	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	249	619	0	ENST00000373198.4:c.3167A>C	p.His1056Pro	p.H1056P	ENST00000373198	NM_133170.3	1056	cAt/cCt																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40790158	40790158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	120	550	0	ENST00000373198.4:c.2573C>T	p.Ser858Phe	p.S858F	ENST00000373198	NM_133170.3	858	tCc/tTc																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41400175	41400175	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	159	680	0	ENST00000373198.4:c.584T>A	p.Phe195Tyr	p.F195Y	ENST00000373198	NM_133170.3	195	tTt/tAt																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46255817	46255817	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	100	569	0	ENST00000371998.3:c.429A>T	p.Gln143His	p.Q143H	ENST00000371998		143	caA/caT																																												NEWRECORD																																		
AURKA	0	MSKCC	GRCh37	20	54945308	54945308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	193	312	0	ENST00000312783.6:c.1118T>C	p.Met373Thr	p.M373T	ENST00000312783	NM_198436.1	373	aTg/aCg																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39755401	39755401	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	165	737	1	ENST00000288319.7:c.1364C>T	p.Ser455Leu	p.S455L	ENST00000288319	NM_182918.3	455	tCa/tTa																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30000004	30000004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	186	366	0	ENST00000338641.4:c.17C>T	p.Ala6Val	p.A6V	ENST00000338641	NM_000268.3	6	gCt/gTt																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52712531	52712531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	208	751	1	ENST00000394830.3:c.221G>A	p.Arg74Lys	p.R74K	ENST00000394830	NM_018313.4	74	aGg/aAg																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89478288	89478288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			390	65	535	1	ENST00000336596.2:c.2107G>A	p.Glu703Lys	p.E703K	ENST00000336596	NM_005233.5	703	Gag/Aag																																												NEWRECORD																																		
WWTR1	0	MSKCC	GRCh37	3	149238699	149238699	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	347	864	0	ENST00000360632.3:c.1096G>A	p.Gly366Arg	p.G366R	ENST00000360632	NM_015472.4	366	Gga/Aga																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			145	593	691	0	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			120	335	558	0	ENST00000288135.5:c.1676T>C	p.Val559Ala	p.V559A	ENST00000288135	NM_000222.2	559	gTt/gCt																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593630	55593630	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	380	581	0	ENST00000288135.5:c.1696A>G	p.Asn566Asp	p.N566D	ENST00000288135	NM_000222.2	566	Aac/Gac																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187627774	187627774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	159	648	0	ENST00000441802.2:c.3208C>T	p.Arg1070Ter	p.R1070*	ENST00000441802	NM_005245.3	1070	Cga/Tga																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	423	548	2				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	38963117	38963117	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	108	302	0	ENST00000357387.3:c.1427T>G	p.Leu476Ter	p.L476*	ENST00000357387	NM_152756.3	476	tTa/tGa																																												NEWRECORD																																		
MAP3K1	0	MSKCC	GRCh37	5	56178155	56178155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	412	546	0	ENST00000399503.3:c.3128C>T	p.Ser1043Phe	p.S1043F	ENST00000399503	NM_005921.1	1043	tCc/tTc																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67522616	67522619	+	frameshift_variant	Frame_Shift_Del	DEL	TAGC	TAGC	AGT			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	178	503	2	ENST00000274335.5:c.113_116delTAGCinsAGT	p.Val38GlufsTer19	p.V38Efs*19	ENST00000274335		38	gTAGCt/gAGTt																																												NEWRECORD																																		
STK19	0	MSKCC	GRCh37	6	31940120	31940120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	180	779	0	ENST00000375331.2:c.262G>A	p.Glu88Lys	p.E88K	ENST00000375331	NM_004197.1	88	Gaa/Aaa																																												NEWRECORD																																		
STK19	0	MSKCC	GRCh37	6	31940123	31940123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	214	790	0	ENST00000375331.2:c.265G>A	p.Asp89Asn	p.D89N	ENST00000375331	NM_004197.1	89	Gac/Aac																																												NEWRECORD																																		
TAP1	0	MSKCC	GRCh37	6	32821451	32821452	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	150	755	2	ENST00000354258.4:c.142_143delCCinsTT	p.Pro48Phe	p.P48F	ENST00000354258	NM_000593.5	48	CCc/TTc																																												NEWRECORD																																		
FYN	0	MSKCC	GRCh37	6	112015634	112015634	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			373	159	572	0	ENST00000368678.4:c.1208T>G	p.Ile403Ser	p.I403S	ENST00000368678		403	aTt/aGt																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729275	41729275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	180	438	0	ENST00000242208.4:c.1254G>A	p.Met418Ile	p.M418I	ENST00000242208	NM_002192.2	418	atG/atA																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55240819	55240819	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1123	131	895	1	ENST00000275493.2:c.2061+2T>A		p.X687_splice	ENST00000275493	NM_005228.3	687																																													NEWRECORD																																		
PIK3CG	0	MSKCC	GRCh37	7	106509849	106509849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			918	306	682	0	ENST00000359195.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000359195	NM_002649.2	615	Gaa/Aaa																																												NEWRECORD																																		
PIK3CG	5294	MSKCC	GRCh37	7	106520027	106520027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370034420		P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	125	428	1	ENST00000359195.3:c.2455G>A	p.Asp819Asn	p.D819N	ENST00000359195	NM_002649.2	819	Gat/Aat																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116340015	116340015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	349	418	0	ENST00000397752.3:c.877G>A	p.Glu293Lys	p.E293K	ENST00000397752	NM_000245.2	293	Gaa/Aaa																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116411586	116411586	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	162	461	0	ENST00000397752.3:c.2765A>T	p.Lys922Ile	p.K922I	ENST00000397752	NM_000245.2	922	aAa/aTa																																												NEWRECORD																																		
EZH2	0	MSKCC	GRCh37	7	148508728	148508728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			517	465	563	0	ENST00000320356.2:c.1936T>C	p.Tyr646His	p.Y646H	ENST00000320356	NM_004456.4	646	Tac/Cac																																												NEWRECORD																																		
LYN	0	MSKCC	GRCh37	8	56864598	56864598	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	126	858	0	ENST00000519728.1:c.561T>A	p.Ser187Arg	p.S187R	ENST00000519728	NM_002350.3	187	agT/agA																																												NEWRECORD																																		
LYN	0	MSKCC	GRCh37	8	56912075	56912075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			437	233	773	1	ENST00000519728.1:c.1303G>A	p.Glu435Lys	p.E435K	ENST00000519728	NM_002350.3	435	Gaa/Aaa																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	68956771	68956771	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	145	758	4	ENST00000288368.4:c.889C>T	p.Arg297Cys	p.R297C	ENST00000288368	NM_024870.2	297	Cgt/Tgt																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	68989671	68989671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	275	729	2	ENST00000288368.4:c.1609G>T	p.Val537Phe	p.V537F	ENST00000288368	NM_024870.2	537	Gtt/Ttt																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	69069599	69069599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	109	704	1	ENST00000288368.4:c.4274C>T	p.Ser1425Phe	p.S1425F	ENST00000288368	NM_024870.2	1425	tCt/tTt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8341168	8341168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			217	80	613	0	ENST00000356435.5:c.5048C>T	p.Ser1683Phe	p.S1683F	ENST00000356435		1683	tCc/tTc																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8484270	8484270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	124	611	0	ENST00000356435.5:c.3262C>T	p.Arg1088Cys	p.R1088C	ENST00000356435		1088	Cgt/Tgt																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8499727	8499727	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	140	616	0	ENST00000356435.5:c.2242C>T	p.Gln748Ter	p.Q748*	ENST00000356435		748	Cag/Tag																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8518111	8518111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	88	469	2	ENST00000356435.5:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000356435		427	cGa/cAa																																												NEWRECORD																																		
NTRK2	0	MSKCC	GRCh37	9	87563545	87563545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	98	564	0	ENST00000277120.3:c.1933C>T	p.Leu645Phe	p.L645F	ENST00000277120		645	Ctc/Ttc																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98212173	98212173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	116	589	0	ENST00000331920.6:c.3499G>A	p.Gly1167Arg	p.G1167R	ENST00000331920	NM_000264.3	1167	Ggg/Agg																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100613605	100613605	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			206	130	315	1	ENST00000308731.7:c.974G>A	p.Gly325Glu	p.G325E	ENST00000308731	NM_000061.2	325	gGg/gAg																																												NEWRECORD																																		
FAM58A	0	MSKCC	GRCh37	X	152858020	152858020	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014946-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			41	100	181	0	ENST00000406277.2:c.595C>T	p.Gln199Ter	p.Q199*	ENST00000406277	NM_152274.4	199	Cag/Tag																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	435	217	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
VHL	0	MSKCC	GRCh37	3	10191488	10191488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	114	273	0	ENST00000256474.2:c.481C>T	p.Arg161Ter	p.R161*	ENST00000256474	NM_000551.3	161	Cga/Tga																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52668750	52668750	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	113	401	0	ENST00000394830.3:c.1169delA	p.Tyr390LeufsTer14	p.Y390Lfs*14	ENST00000394830	NM_018313.4	390	tAt/tt																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42793127	42793127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	355	478	0	ENST00000575354.2:c.1019G>A	p.Arg340Gln	p.R340Q	ENST00000575354	NM_015125.3	340	cGg/cAg																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0008600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	258	542	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga																																												NEWRECORD																																		
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0008600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	243	399	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga																																												NEWRECORD																																		
ASXL1	0	MSKCC	GRCh37	20	31022403	31022425	+	frameshift_variant	Frame_Shift_Del	DEL	CACCACTGCCATAGAGAGGCGGC	CACCACTGCCATAGAGAGGCGGC	-			P-0008600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	92	186	0	ENST00000375687.4:c.1900_1922delAGAGAGGCGGCCACCACTGCCAT	p.Glu635ArgfsTer15	p.E635Rfs*15	ENST00000375687	NM_015338.5	630	CACCACTGCCATAGAGAGGCGGCc/c																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29508741	29508741	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	247	544	1	ENST00000358273.4:c.668G>A	p.Trp223Ter	p.W223*	ENST00000358273	NM_001042492.2	223	tGg/tAg																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578181	7578181	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	470	539	0	ENST00000269305.4:c.668delC	p.Pro223LeufsTer24	p.P223Lfs*24	ENST00000269305	NM_001126112.2	223	cCt/ct																																												NEWRECORD																																		
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0008579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	62	385	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0008579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	86	194	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	41	317	0	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	10273974	10273974	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	37	425	0	ENST00000330684.3:c.295G>A	p.Val99Met	p.V99M	ENST00000330684	NM_001134407.1	99	Gtg/Atg																																												NEWRECORD																																		
MAP2K4	0	MSKCC	GRCh37	17	12028612	12028612	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	48	312	0	ENST00000353533.5:c.815C>T	p.Pro272Leu	p.P272L	ENST00000353533	NM_003010.3	272	cCt/cTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577581	7577595	+	inframe_deletion	In_Frame_Del	DEL	AGTGGATGGTGGTAC	AGTGGATGGTGGTAC	-			P-0008579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	25	242	0	ENST00000269305.4:c.686_700delGTACCACCATCCACT	p.Cys229_His233del	p.C229_H233del	ENST00000269305	NM_001126112.2	229	tGTACCACCATCCACTac/tac																																												NEWRECORD																																		
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	1718	281	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	157	527	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	22	185	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47044892	47044892	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	109	381	0	ENST00000329236.7:c.1984G>T	p.Glu662Ter	p.E662*	ENST00000329236	NM_001204466.1	662	Gag/Tag																																												NEWRECORD																																		
CASP8	0	MSKCC	GRCh37	2	202149860	202149860	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	53	303	0	ENST00000358485.4:c.1301C>G	p.Ser434Ter	p.S434*	ENST00000358485	NM_001080125.1	434	tCa/tGa																																												NEWRECORD																																		
HLA-A	0	MSKCC	GRCh37	6	29912286	29912286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	59	336	0	ENST00000376809.5:c.905C>T	p.Ser302Phe	p.S302F	ENST00000376809	NM_002116.7	302	tCc/tTc																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	93982021	93982021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	44	390	0	ENST00000369303.4:c.1444G>A	p.Glu482Lys	p.E482K	ENST00000369303	NM_004440.3	482	Gag/Aag																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103515262	103515262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	66	309	0	ENST00000355739.4:c.1763G>T	p.Ser588Ile	p.S588I	ENST00000355739	NM_000123.3	588	aGc/aTc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1207027	1207027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	50	264	0	ENST00000326873.7:c.115C>T	p.Arg39Cys	p.R39C	ENST00000326873	NM_000455.4	39	Cgc/Tgc																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36259173	36259173	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	72	420	1	ENST00000300305.3:c.318G>A	p.Trp106Ter	p.W106*	ENST00000300305		106	tgG/tgA																																												NEWRECORD																																		
IKBKE	0	MSKCC	GRCh37	1	206647673	206647673	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			237	121	212	0	ENST00000367120.3:c.88-1G>A		p.X30_splice	ENST00000367120	NM_014002.3	30																																													NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89725042	89725042	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			63	775	333	1	ENST00000371953.3:c.1027-2A>T		p.X343_splice	ENST00000371953	NM_000314.4	343																																													NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			421	276	183	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	41419837	41419837	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			290	107	285	0	ENST00000373198.4:c.484C>T	p.Gln162Ter	p.Q162*	ENST00000373198	NM_133170.3	162	Cag/Tag																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140476791	140476791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			596	402	313	0	ENST00000288602.6:c.1615C>T	p.His539Tyr	p.H539Y	ENST00000288602	NM_004333.4	539	Cac/Tac																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32187419	32187419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			582	102	328	0	ENST00000375023.3:c.1460G>A	p.Gly487Glu	p.G487E	ENST00000375023	NM_004557.3	487	gGa/gAa																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220439664	220439664	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			378	761	729	0	ENST00000243786.2:c.517C>T	p.Pro173Ser	p.P173S	ENST00000243786	NM_002191.3	173	Ccc/Tcc																																												NEWRECORD																																		
SETD2	0	MSKCC	GRCh37	3	47164307	47164307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			314	229	264	0	ENST00000409792.3:c.1819C>T	p.Pro607Ser	p.P607S	ENST00000409792	NM_014159.6	607	Cct/Tct																																												NEWRECORD																																		
FOXP1	0	MSKCC	GRCh37	3	71102904	71102904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			136	97	159	0	ENST00000318789.4:c.303G>A	p.Met101Ile	p.M101I	ENST00000318789	NM_032682.5	101	atG/atA																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134911572	134911572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			284	110	229	0	ENST00000398015.3:c.2037C>A	p.Asn679Lys	p.N679K	ENST00000398015	NM_004441.4	679	aaC/aaA																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187554861	187554861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			554	227	342	0	ENST00000441802.2:c.4300G>A	p.Gly1434Arg	p.G1434R	ENST00000441802	NM_005245.3	1434	Gga/Aga																																												NEWRECORD																																		
MDC1	0	MSKCC	GRCh37	6	30680877	30680877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			2720	521	623	0	ENST00000376406.3:c.842G>T	p.Gly281Val	p.G281V	ENST00000376406	NM_014641.2	281	gGg/gTg																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2949769	2949769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			136	100	280	0	ENST00000396946.4:c.3175G>A	p.Gly1059Ser	p.G1059S	ENST00000396946	NM_032415.4	1059	Ggc/Agc																																												NEWRECORD																																		
EGFR	0	MSKCC	GRCh37	7	55241632	55241632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			233	102	279	1	ENST00000275493.2:c.2080C>T	p.Pro694Ser	p.P694S	ENST00000275493	NM_005228.3	694	Ccc/Tcc																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81346575	81346575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			709	599	373	0	ENST00000222390.5:c.1378C>T	p.Pro460Ser	p.P460S	ENST00000222390	NM_000601.4	460	Cct/Tct																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140477794	140477794	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			664	210	247	0	ENST00000288602.6:c.1514T>A	p.Leu505His	p.L505H	ENST00000288602	NM_004333.4	505	cTc/cAc																																												NEWRECORD																																		
PPP6C	0	MSKCC	GRCh37	9	127915939	127915939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			517	396	704	2	ENST00000373547.4:c.542G>A	p.Arg181Gln	p.R181Q	ENST00000373547	NM_002721.4	181	cGg/cAg																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64137832	64137832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			355	548	480	0	ENST00000334205.4:c.1933G>A	p.Glu645Lys	p.E645K	ENST00000334205	NM_003942.2	645	Gag/Aag																																												NEWRECORD																																		
RPS6KB2	0	MSKCC	GRCh37	11	67200425	67200425	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			271	235	208	0	ENST00000312629.5:c.619C>T	p.His207Tyr	p.H207Y	ENST00000312629	NM_003952.2	207	Cac/Tac																																												NEWRECORD																																		
FGF19	0	MSKCC	GRCh37	11	69514302	69514302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			205	100	327	1	ENST00000294312.3:c.379C>T	p.Arg127Cys	p.R127C	ENST00000294312	NM_005117.2	127	Cgc/Tgc																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108119809	108119809	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			528	257	298	0	ENST00000278616.4:c.1215T>G	p.Asn405Lys	p.N405K	ENST00000278616	NM_000051.3	405	aaT/aaG																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49444024	49444024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			458	193	288	0	ENST00000301067.7:c.3347C>T	p.Ser1116Phe	p.S1116F	ENST00000301067	NM_003482.3	1116	tCt/tTt																																												NEWRECORD																																		
GLI1	0	MSKCC	GRCh37	12	57859436	57859436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	422	689	1	ENST00000228682.2:c.581C>T	p.Pro194Leu	p.P194L	ENST00000228682	NM_005269.2	194	cCc/cTc																																												NEWRECORD																																		
TSHR	0	MSKCC	GRCh37	14	81554305	81554305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			603	470	485	0	ENST00000298171.2:c.325C>T	p.Arg109Trp	p.R109W	ENST00000298171	NM_000369.2	109	Cgg/Tgg																																												NEWRECORD																																		
SOCS1	0	MSKCC	GRCh37	16	11349080	11349080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			169	78	112	0	ENST00000332029.2:c.256G>T	p.Val86Leu	p.V86L	ENST00000332029	NM_003745.1	86	Gtg/Ttg																																												NEWRECORD																																		
CDH1	0	MSKCC	GRCh37	16	68863648	68863648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			201	164	317	0	ENST00000261769.5:c.2387G>A	p.Arg796Gln	p.R796Q	ENST00000261769	NM_004360.3	796	cGg/cAg																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15288726	15288726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			43	26	74	0	ENST00000263388.2:c.4013G>C	p.Ser1338Thr	p.S1338T	ENST00000263388	NM_000435.2	1338	aGc/aCc																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9538302	9538302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			316	238	365	0	ENST00000353224.5:c.1696C>T	p.His566Tyr	p.H566Y	ENST00000353224	NM_177990.2	566	Cac/Tac																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40714436	40714436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			155	124	201	0	ENST00000373198.4:c.3961G>A	p.Glu1321Lys	p.E1321K	ENST00000373198	NM_133170.3	1321	Gag/Aag																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40727065	40727065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			174	119	251	0	ENST00000373198.4:c.3899C>T	p.Ala1300Val	p.A1300V	ENST00000373198	NM_133170.3	1300	gCc/gTc																																												NEWRECORD																																		
EIF1AX	0	MSKCC	GRCh37	X	20159743	20159743	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			493	522	278	1	ENST00000379607.5:c.16G>T	p.Gly6Cys	p.G6C	ENST00000379607	NM_001412.3	6	Ggt/Tgt																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26032155	26032155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006541-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			4007	438	852	0	ENST00000244661.2:c.134G>A	p.Gly45Asp	p.G45D	ENST00000244661	NM_003537.3	45	gGc/gAc																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014964-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	22	554	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	177	648	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa																																												NEWRECORD																																		
BAP1	0	MSKCC	GRCh37	3	52441253	52441253	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	152	595	0	ENST00000460680.1:c.517T>C	p.Tyr173His	p.Y173H	ENST00000460680	NM_004656.3	173	Tat/Cat																																												NEWRECORD																																		
BTK	0	MSKCC	GRCh37	X	100630136	100630136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014311-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	130	515	1	ENST00000308731.7:c.137G>A	p.Arg46His	p.R46H	ENST00000308731	NM_000061.2	46	cGt/cAt																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1061	78	586	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			840	210	544	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			840	210	544	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46743931	46743931	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			857	49	408	0	ENST00000371975.4:c.2221G>T	p.Glu741Ter	p.E741*	ENST00000371975	NM_003579.3	741	Gag/Tag																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7576853	7576853	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			861	231	473	0	ENST00000269305.4:c.993G>T	p.Gln331His	p.Q331H	ENST00000269305	NM_001126112.2	331	caG/caT																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115120795	115120795	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			751	63	386	1	ENST00000257566.3:c.211delG	p.Ala71ArgfsTer17	p.A71Rfs*17	ENST00000257566	NM_016569.3	71	Gcg/cg																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8074091	8074091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			598	69	302	0	ENST00000377482.5:c.568G>T	p.Asp190Tyr	p.D190Y	ENST00000377482	NM_018948.3	190	Gat/Tat																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11303199	11303199	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			983	136	540	2	ENST00000361445.4:c.1384G>T	p.Ala462Ser	p.A462S	ENST00000361445	NM_004958.3	462	Gcc/Tcc																																												NEWRECORD																																		
FUBP1	0	MSKCC	GRCh37	1	78430784	78430784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			981	138	431	0	ENST00000370768.2:c.605G>T	p.Gly202Val	p.G202V	ENST00000370768	NM_003902.3	202	gGa/gTa																																												NEWRECORD																																		
CSDE1	0	MSKCC	GRCh37	1	115277140	115277140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			845	109	359	0	ENST00000438362.2:c.643G>A	p.Gly215Ser	p.G215S	ENST00000438362	NM_001242891.1	215	Ggt/Agt																																												NEWRECORD																																		
VTCN1	0	MSKCC	GRCh37	1	117712729	117712729	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			945	139	488	0	ENST00000369458.3:c.97G>T	p.Gly33Trp	p.G33W	ENST00000369458	NM_024626.3	33	Ggg/Tgg																																												NEWRECORD																																		
ELF3	0	MSKCC	GRCh37	1	201981833	201981833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1133	180	618	0	ENST00000359651.3:c.545delG	p.Gly182AlafsTer72	p.G182Afs*72	ENST00000359651		182	Ggc/gc																																												NEWRECORD																																		
HIST3H3	0	MSKCC	GRCh37	1	228612642	228612642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			932	143	492	2	ENST00000366696.1:c.385C>A	p.Arg129Ser	p.R129S	ENST00000366696	NM_003493.2	129	Cgc/Agc																																												NEWRECORD																																		
PTEN	0	MSKCC	GRCh37	10	89725073	89725073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			384	62	188	0	ENST00000371953.3:c.1056G>T	p.Glu352Asp	p.E352D	ENST00000371953	NM_000314.4	352	gaG/gaT																																												NEWRECORD																																		
MEN1	0	MSKCC	GRCh37	11	64575400	64575400	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	77	520	0	ENST00000337652.1:c.632G>C	p.Arg211Pro	p.R211P	ENST00000337652	NM_130803.2	211	cGc/cCc																																												NEWRECORD																																		
INPPL1	0	MSKCC	GRCh37	11	71944508	71944508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1138	80	636	0	ENST00000298229.2:c.2064G>T	p.Trp688Cys	p.W688C	ENST00000298229	NM_001567.3	688	tgG/tgT																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108175479	108175479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			742	88	410	1	ENST00000278616.4:c.5574G>C	p.Trp1858Cys	p.W1858C	ENST00000278616	NM_000051.3	1858	tgG/tgC																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118342648	118342648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			667	83	313	0	ENST00000534358.1:c.774G>T	p.Arg258Ser	p.R258S	ENST00000534358	NM_005933.3	258	agG/agT																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18435295	18435295	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			759	131	361	0	ENST00000266497.5:c.280C>A	p.Arg94Ser	p.R94S	ENST00000266497		94	Cgt/Agt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420432	49420432	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			951	136	494	1	ENST00000301067.7:c.15317G>T	p.Arg5106Leu	p.R5106L	ENST00000301067	NM_003482.3	5106	cGc/cTc																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49446479	49446479	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			719	45	353	0	ENST00000301067.7:c.1126G>T	p.Glu376Ter	p.E376*	ENST00000301067	NM_003482.3	376	Gag/Tag																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115109980	115109980	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1231	198	820	1	ENST00000257566.3:c.1898C>A	p.Thr633Asn	p.T633N	ENST00000257566	NM_016569.3	633	aCc/aAc																																												NEWRECORD																																		
POLE	0	MSKCC	GRCh37	12	133219159	133219159	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1112	172	635	0	ENST00000320574.5:c.4885G>C	p.Ala1629Pro	p.A1629P	ENST00000320574	NM_006231.2	1629	Gcc/Ccc																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32912475	32912475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			823	58	384	0	ENST00000380152.3:c.3983G>T	p.Ser1328Ile	p.S1328I	ENST00000380152		1328	aGt/aTt																																												NEWRECORD																																		
IRS2	0	MSKCC	GRCh37	13	110434614	110434614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	89	612	0	ENST00000375856.3:c.3787G>A	p.Gly1263Arg	p.G1263R	ENST00000375856	NM_003749.2	1263	Ggg/Agg																																												NEWRECORD																																		
NTRK3	0	MSKCC	GRCh37	15	88420291	88420291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			890	123	445	0	ENST00000360948.2:c.2395G>T	p.Val799Leu	p.V799L	ENST00000360948	NM_001012338.2	799	Gtg/Ttg																																												NEWRECORD																																		
AXIN1	0	MSKCC	GRCh37	16	339441	339441	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	66	523	0	ENST00000262320.3:c.2461A>T	p.Arg821Ter	p.R821*	ENST00000262320	NM_003502.3	821	Aga/Tga																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3817818	3817818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1397	80	642	0	ENST00000262367.5:c.3153G>C	p.Lys1051Asn	p.K1051N	ENST00000262367	NM_004380.2	1051	aaG/aaC																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3824597	3824597	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			879	61	393	0	ENST00000262367.5:c.2256G>C	p.Gln752His	p.Q752H	ENST00000262367	NM_004380.2	752	caG/caC																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9858241	9858241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			785	53	339	0	ENST00000330684.3:c.3160G>A	p.Glu1054Lys	p.E1054K	ENST00000330684	NM_001134407.1	1054	Gaa/Aaa																																												NEWRECORD																																		
CTCF	0	MSKCC	GRCh37	16	67670670	67670670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	139	591	0	ENST00000264010.4:c.1915C>A	p.Gln639Lys	p.Q639K	ENST00000264010	NM_006565.3	639	Cag/Aag																																												NEWRECORD																																		
PMAIP1	0	MSKCC	GRCh37	18	57567433	57567433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			890	66	474	0	ENST00000316660.6:c.24G>T	p.Lys8Asn	p.K8N	ENST00000316660	NM_021127.2	8	aaG/aaT																																												NEWRECORD																																		
DOT1L	0	MSKCC	GRCh37	19	2164229	2164229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			998	67	544	0	ENST00000398665.3:c.46G>A	p.Glu16Lys	p.E16K	ENST00000398665	NM_032482.2	16	Gag/Aag																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5218503	5218503	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1195	169	681	1	ENST00000357368.4:c.3976A>T	p.Asn1326Tyr	p.N1326Y	ENST00000357368	NM_002850.3	1326	Aac/Tac																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5221015	5221015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			690	150	390	0	ENST00000357368.4:c.3451G>A	p.Val1151Ile	p.V1151I	ENST00000357368	NM_002850.3	1151	Gtc/Atc																																												NEWRECORD																																		
MLL4	0	MSKCC	GRCh37	19	36211243	36211243	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1759	366	988	0	ENST00000222270.7:c.994C>A	p.His332Asn	p.H332N	ENST00000222270	NM_014727.1	332	Cat/Aat																																												NEWRECORD																																		
MLL4	0	MSKCC	GRCh37	19	36221331	36221331	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1486	115	690	0	ENST00000222270.7:c.5165G>T	p.Gly1722Val	p.G1722V	ENST00000222270	NM_014727.1	1722	gGg/gTg																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212426687	212426687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			971	141	570	0	ENST00000342788.4:c.2428G>C	p.Glu810Gln	p.E810Q	ENST00000342788	NM_005235.2	810	Gag/Cag																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215595149	215595149	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			862	113	420	0	ENST00000260947.4:c.1987A>C	p.Asn663His	p.N663H	ENST00000260947	NM_000465.2	663	Aac/Cac																																												NEWRECORD																																		
IRS1	0	MSKCC	GRCh37	2	227660316	227660316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			588	35	305	0	ENST00000305123.5:c.3139C>A	p.Pro1047Thr	p.P1047T	ENST00000305123	NM_005544.2	1047	Cct/Act																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9520152	9520152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			654	47	350	0	ENST00000353224.5:c.2117C>A	p.Pro706Gln	p.P706Q	ENST00000353224	NM_177990.2	706	cCg/cAg																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46264944	46264944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			849	123	432	2	ENST00000371998.3:c.1814G>T	p.Gly605Val	p.G605V	ENST00000371998		605	gGg/gTg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52676041	52676041	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	139	491	0	ENST00000394830.3:c.1016G>T	p.Gly339Val	p.G339V	ENST00000394830	NM_018313.4	339	gGa/gTa																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134851784	134851784	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	149	565	0	ENST00000398015.3:c.1190G>C	p.Trp397Ser	p.W397S	ENST00000398015	NM_004441.4	397	tGg/tCg																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134977879	134977879	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			881	125	464	0	ENST00000398015.3:c.2872T>A	p.Leu958Met	p.L958M	ENST00000398015	NM_004441.4	958	Ttg/Atg																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612083	189612083	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1021	137	500	0	ENST00000264731.3:c.1835C>A	p.Ser612Tyr	p.S612Y	ENST00000264731	NM_003722.4	612	tCc/tAc																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1808913	1808913	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1140	63	632	0	ENST00000260795.2:c.2345C>G	p.Ser782Cys	p.S782C	ENST00000260795		782	tCc/tGc																																												NEWRECORD																																		
WHSC1	0	MSKCC	GRCh37	4	1920179	1920179	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1232	84	707	1	ENST00000382891.5:c.1239G>C	p.Glu413Asp	p.E413D	ENST00000382891	NM_133335.3	413	gaG/gaC																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55129917	55129917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1019	123	581	2	ENST00000257290.5:c.451C>A	p.Arg151Ser	p.R151S	ENST00000257290	NM_006206.4	151	Cgc/Agc																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55129957	55129957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			993	120	661	1	ENST00000257290.5:c.491G>A	p.Ser164Asn	p.S164N	ENST00000257290	NM_006206.4	164	aGt/aAt																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55960973	55960973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			663	52	321	0	ENST00000263923.4:c.2967G>T	p.Glu989Asp	p.E989D	ENST00000263923	NM_002253.2	989	gaG/gaT																																												NEWRECORD																																		
EIF4E	0	MSKCC	GRCh37	4	99802246	99802246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			459	34	221	0	ENST00000280892.6:c.647G>T	p.Gly216Val	p.G216V	ENST00000280892	NM_001130678.1	216	gGt/gTt																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143067094	143067094	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			802	119	443	0	ENST00000262992.4:c.1619A>T	p.Asp540Val	p.D540V	ENST00000262992	NM_001101669.1	540	gAc/gTc																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187540001	187540001	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			658	56	343	0	ENST00000441802.2:c.7739G>C	p.Cys2580Ser	p.C2580S	ENST00000441802	NM_005245.3	2580	tGc/tCc																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149501449	149501449	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	126	582	0	ENST00000261799.4:c.2338C>A	p.Pro780Thr	p.P780T	ENST00000261799	NM_002609.3	780	Ccc/Acc																																												NEWRECORD																																		
TAP2	0	MSKCC	GRCh37	6	32805656	32805656	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1214	92	652	0	ENST00000374899.4:c.355C>G	p.Leu119Val	p.L119V	ENST00000374899	NM_018833.2	119	Ctg/Gtg																																												NEWRECORD																																		
ARID1B	0	MSKCC	GRCh37	6	157099233	157099233	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			968	62	476	0	ENST00000346085.5:c.170C>G	p.Ser57Trp	p.S57W	ENST00000346085	NM_020732.3	57	tCg/tGg																																												NEWRECORD																																		
RAC1	0	MSKCC	GRCh37	7	6431634	6431634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			779	115	390	1	ENST00000356142.4:c.187G>T	p.Asp63Tyr	p.D63Y	ENST00000356142	NM_018890.3	63	Gat/Tat																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729265	41729265	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			715	94	352	0	ENST00000242208.4:c.1264delG	p.Glu422SerfsTer26	p.E422Sfs*26	ENST00000242208	NM_002192.2	422	Gag/ag																																												NEWRECORD																																		
INHBA	0	MSKCC	GRCh37	7	41729332	41729332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			904	107	468	0	ENST00000242208.4:c.1197G>T	p.Met399Ile	p.M399I	ENST00000242208	NM_002192.2	399	atG/atT																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81392055	81392055	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			827	105	368	0	ENST00000222390.5:c.222T>A	p.Cys74Ter	p.C74*	ENST00000222390	NM_000601.4	74	tgT/tgA																																												NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140434571	140434571	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			350	21	134	0	ENST00000288602.6:c.2128-1G>C		p.X710_splice	ENST00000288602	NM_004333.4	710																																													NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5089819	5089819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			775	105	373	0	ENST00000381652.3:c.2717A>G	p.Gln906Arg	p.Q906R	ENST00000381652	NM_004972.3	906	cAg/cGg																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8504371	8504371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			895	201	504	0	ENST00000356435.5:c.1712G>T	p.Arg571Met	p.R571M	ENST00000356435		571	aGg/aTg																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53246458	53246458	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			759	133	505	0	ENST00000375401.3:c.524A>T	p.Gln175Leu	p.Q175L	ENST00000375401	NM_004187.3	175	cAg/cTg																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70333719	70333719	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			997	73	441	0	ENST00000373644.4:c.1624G>C	p.Asp542His	p.D542H	ENST00000373644	NM_030625.2	542	Gac/Cac																																												NEWRECORD																																		
CDK8	0	MSKCC	GRCh37	13	26975602	26975602	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			466	26	210	0	ENST00000381527.3:c.1111-1G>T		p.X371_splice	ENST00000381527	NM_001260.1	371																																													NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32907118	32907118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			843	73	399	0	ENST00000380152.3:c.1503C>G	p.Ile501Met	p.I501M	ENST00000380152		501	atC/atG																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32945213	32945213	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1003	58	458	0	ENST00000380152.3:c.8608C>T	p.Gln2870Ter	p.Q2870*	ENST00000380152		2870	Cag/Tag																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32954267	32954267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			894	52	428	2	ENST00000380152.3:c.9241G>T	p.Val3081Phe	p.V3081F	ENST00000380152		3081	Gtt/Ttt																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41244684	41244684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1391	84	668	1	ENST00000357654.3:c.2864C>T	p.Ser955Leu	p.S955L	ENST00000357654	NM_007294.3	955	tCa/tTa																																												NEWRECORD																																		
BRD4	0	MSKCC	GRCh37	19	15375543	15375543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1312	205	828	0	ENST00000263377.2:c.884C>G	p.Thr295Ser	p.T295S	ENST00000263377	NM_058243.2	295	aCc/aGc																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259527	89259527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			839	46	405	0	ENST00000336596.2:c.671T>C	p.Val224Ala	p.V224A	ENST00000336596	NM_005233.5	224	gTg/gCg																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143159157	143159157	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			607	44	279	2	ENST00000262992.4:c.696G>T	p.Lys232Asn	p.K232N	ENST00000262992	NM_001101669.1	232	aaG/aaT																																												NEWRECORD																																		
PARK2	0	MSKCC	GRCh37	6	162622231	162622231	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014322-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			811	63	376	0	ENST00000366898.1:c.466A>G	p.Arg156Gly	p.R156G	ENST00000366898	NM_004562.2	156	Aga/Gga																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0014032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	139	541	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140481403	140481403	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913357		P-0014032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	163	540	0	ENST00000288602.6:c.1405G>A	p.Gly469Arg	p.G469R	ENST00000288602	NM_004333.4	469	Gga/Aga																																												NEWRECORD																																		
ATM	0	MSKCC	GRCh37	11	108206609	108206609	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	251	615	0	ENST00000278616.4:c.8189A>T	p.Gln2730Leu	p.Q2730L	ENST00000278616	NM_000051.3	2730	cAg/cTg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0014397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	331	883	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	309	1191	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	301	821	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT																																												NEWRECORD																																		
CIC	0	MSKCC	GRCh37	19	42798153	42798153	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014397-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	177	885	0	ENST00000575354.2:c.4108delG	p.Val1370CysfsTer45	p.V1370Cfs*45	ENST00000575354	NM_015125.3	1369	gaG/ga																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	208	472	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	156	271	2	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga																																												NEWRECORD																																		
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	322	542	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49037966	49037966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	149	308	0	ENST00000267163.4:c.2206C>T	p.Gln736Ter	p.Q736*	ENST00000267163	NM_000321.2	736	Cag/Tag																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14041612	14041612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	207	317	1	ENST00000311895.7:c.2159C>T	p.Pro720Leu	p.P720L	ENST00000311895	NM_005236.2	720	cCa/cTa																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95557639	95557639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	304	565	0	ENST00000343455.3:c.5428G>A	p.Asp1810Asn	p.D1810N	ENST00000343455	NM_177438.2	1810	Gat/Aat																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9561090	9561090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			265	112	259	0	ENST00000353224.5:c.692C>T	p.Ser231Leu	p.S231L	ENST00000353224	NM_177990.2	231	tCa/tTa																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35876163	35876163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			312	192	460	0	ENST00000303115.3:c.955G>A	p.Glu319Lys	p.E319K	ENST00000303115	NM_002185.3	319	Gaa/Aaa																																												NEWRECORD																																		
PDGFRB	0	MSKCC	GRCh37	5	149501586	149501586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	200	328	0	ENST00000261799.4:c.2201G>A	p.Gly734Glu	p.G734E	ENST00000261799	NM_002609.3	734	gGg/gAg																																												NEWRECORD																																		
CSF3R	0	MSKCC	GRCh37	1	36932280	36932280	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	305	540	0	ENST00000361632.4:c.2189A>C	p.Gln730Pro	p.Q730P	ENST00000361632		730	cAg/cCg																																												NEWRECORD																																		
ELF3	0	MSKCC	GRCh37	1	201982309	201982309	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	303	615	0	ENST00000359651.3:c.689-1G>A		p.X230_splice	ENST00000359651		230																																													NEWRECORD																																		
SH2B3	0	MSKCC	GRCh37	12	111856216	111856217	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	195	254	3	ENST00000341259.2:c.267_268delCCinsTT	p.Arg90Trp	p.R90W	ENST00000341259	NM_005475.2	89	taCCgg/taTTgg																																												NEWRECORD																																		
MSI1	0	MSKCC	GRCh37	12	120785249	120785249	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			455	246	500	0	ENST00000257552.2:c.859G>A	p.Gly287Ser	p.G287S	ENST00000257552	NM_002442.3	287	Ggc/Agc																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28964224	28964224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	99	168	0	ENST00000282397.4:c.1678C>T	p.His560Tyr	p.H560Y	ENST00000282397	NM_002019.4	560	Cat/Tat																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	29041665	29041665	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	164	313	0	ENST00000282397.4:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000282397	NM_002019.4	52	Caa/Taa																																												NEWRECORD																																		
DICER1	0	MSKCC	GRCh37	14	95597871	95597871	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	187	401	0	ENST00000343455.3:c.413G>A	p.Trp138Ter	p.W138*	ENST00000343455	NM_177438.2	138	tGg/tAg																																												NEWRECORD																																		
BLM	0	MSKCC	GRCh37	15	91304239	91304239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	175	373	0	ENST00000355112.3:c.1636G>A	p.Glu546Lys	p.E546K	ENST00000355112	NM_000057.2	546	Gaa/Aaa																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9857476	9857476	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145602289		P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			273	165	415	0	ENST00000330684.3:c.3925C>T	p.Arg1309Trp	p.R1309W	ENST00000330684	NM_001134407.1	1309	Cgg/Tgg																																												NEWRECORD																																		
NF1	0	MSKCC	GRCh37	17	29559809	29559809	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	170	289	0	ENST00000358273.4:c.3406C>T	p.Arg1136Trp	p.R1136W	ENST00000358273	NM_001042492.2	1136	Cgg/Tgg																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37873615	37873615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	348	643	1	ENST00000269571.5:c.1780C>T	p.Pro594Ser	p.P594S	ENST00000269571		594	Ccc/Tcc																																												NEWRECORD																																		
RNF43	0	MSKCC	GRCh37	17	56436154	56436154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			414	267	493	0	ENST00000407977.2:c.983C>T	p.Pro328Leu	p.P328L	ENST00000407977		328	cCc/cTc																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7293826	7293826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			21	12	13	0	ENST00000302850.5:c.77C>T	p.Ala26Val	p.A26V	ENST00000302850	NM_000208.2	26	gCg/gTg																																												NEWRECORD																																		
DNMT1	0	MSKCC	GRCh37	19	10291119	10291119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			554	394	666	0	ENST00000340748.4:c.352C>T	p.Arg118Cys	p.R118C	ENST00000340748		118	Cgt/Tgt																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11144132	11144132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			533	355	690	1	ENST00000344626.4:c.3713C>T	p.Ser1238Phe	p.S1238F	ENST00000344626	NM_003072.3	1238	tCc/tTc																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225378288	225378288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			241	160	285	0	ENST00000264414.4:c.607G>A	p.Glu203Lys	p.E203K	ENST00000264414	NM_003590.4	203	Gaa/Aaa																																												NEWRECORD																																		
ERG	0	MSKCC	GRCh37	21	39755422	39755422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			98	239	530	0	ENST00000288319.7:c.1343C>T	p.Ala448Val	p.A448V	ENST00000288319	NM_182918.3	448	gCc/gTc																																												NEWRECORD																																		
CTNNB1	0	MSKCC	GRCh37	3	41279558	41279558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	183	360	1	ENST00000349496.5:c.2128C>T	p.Arg710Cys	p.R710C	ENST00000349496	NM_001904.3	710	Cgc/Tgc																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189455643	189455643	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs151051217		P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	166	402	0	ENST00000264731.3:c.177G>A	p.Trp59Ter	p.W59*	ENST00000264731	NM_003722.4	59	tgG/tgA																																												NEWRECORD																																		
TET2	0	MSKCC	GRCh37	4	106155354	106155354	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			87	362	363	0	ENST00000380013.4:c.255T>A	p.Tyr85Ter	p.Y85*	ENST00000380013	NM_001127208.2	85	taT/taA																																												NEWRECORD																																		
FBXW7	0	MSKCC	GRCh37	4	153252021	153252021	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			57	239	295	0	ENST00000281708.4:c.986-1G>A		p.X329_splice	ENST00000281708	NM_033632.3	329																																													NEWRECORD																																		
PIM1	0	MSKCC	GRCh37	6	37140813	37140813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	230	410	0	ENST00000373509.5:c.649C>T	p.Arg217Cys	p.R217C	ENST00000373509	NM_002648.3	217	Cgc/Tgc																																												NEWRECORD																																		
PRDM1	0	MSKCC	GRCh37	6	106553594	106553594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			78	169	267	0	ENST00000369096.4:c.1559G>A	p.Gly520Glu	p.G520E	ENST00000369096	NM_001198.3	520	gGa/gAa																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938337	76938337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	219	415	0	ENST00000373344.5:c.2411C>T	p.Ser804Phe	p.S804F	ENST00000373344	NM_000489.3	804	tCt/tTt																																												NEWRECORD																																		
MYC	0	MSKCC	GRCh37	8	128748867	128748867	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			254	160	295	0	ENST00000377970.2:c.28C>T	p.Gln10Ter	p.Q10*	ENST00000377970	NM_002467.4	10	Cag/Tag																																												NEWRECORD																																		
INPPL1	0	MSKCC	GRCh37	11	71942216	71942216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014229-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			401	233	466	0	ENST00000298229.2:c.1480G>A	p.Asp494Asn	p.D494N	ENST00000298229	NM_001567.3	494	Gat/Aat																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	681	491	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
SPEN	0	MSKCC	GRCh37	1	16258580	16258580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	257	392	1	ENST00000375759.3:c.5845C>T	p.Arg1949Trp	p.R1949W	ENST00000375759	NM_015001.2	1949	Cgg/Tgg																																												NEWRECORD																																		
IL7R	0	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	151	307	1	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga																																												NEWRECORD																																		
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	1738	319	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt																																												NEWRECORD																																		
TP63	0	MSKCC	GRCh37	3	189612073	189612073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	301	458	0	ENST00000264731.3:c.1825G>A	p.Glu609Lys	p.E609K	ENST00000264731	NM_003722.4	609	Gaa/Aaa																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55575658	55575658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	267	347	1	ENST00000288135.5:c.1184C>T	p.Ser395Phe	p.S395F	ENST00000288135	NM_000222.2	395	tCc/tTc																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9561520	9561520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			476	306	420	0	ENST00000353224.5:c.262G>A	p.Asp88Asn	p.D88N	ENST00000353224	NM_177990.2	88	Gat/Aat																																												NEWRECORD																																		
INSR	0	MSKCC	GRCh37	19	7132201	7132201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			919	208	551	0	ENST00000302850.5:c.2810C>T	p.Thr937Met	p.T937M	ENST00000302850	NM_000208.2	937	aCg/aTg																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81381514	81381514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			380	203	293	0	ENST00000222390.5:c.547G>A	p.Glu183Lys	p.E183K	ENST00000222390	NM_000601.4	183	Gaa/Aaa																																												NEWRECORD																																		
SESN2	0	MSKCC	GRCh37	1	28599234	28599234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	451	614	1	ENST00000253063.3:c.680C>T	p.Ala227Val	p.A227V	ENST00000253063	NM_031459.4	227	gCc/gTc																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458800	120458800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2181	562	523	0	ENST00000256646.2:c.6545C>T	p.Pro2182Leu	p.P2182L	ENST00000256646	NM_024408.3	2182	cCt/cTt																																												NEWRECORD																																		
FH	0	MSKCC	GRCh37	1	241661202	241661202	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	51	473	0	ENST00000366560.3:c.1459A>C	p.Ile487Leu	p.I487L	ENST00000366560	NM_000143.3	487	Atc/Ctc																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43601977	43601977	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			694	406	667	0	ENST00000355710.3:c.1021C>T	p.Gln341Ter	p.Q341*	ENST00000355710	NM_020975.4	341	Cag/Tag																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70405212	70405212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	262	409	0	ENST00000373644.4:c.2726C>T	p.Ser909Phe	p.S909F	ENST00000373644	NM_030625.2	909	tCc/tTc																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	49027169	49027169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	93	368	0	ENST00000267163.4:c.1736G>A	p.Arg579Gln	p.R579Q	ENST00000267163	NM_000321.2	579	cGa/cAa																																												NEWRECORD																																		
ERCC5	0	MSKCC	GRCh37	13	103527940	103527940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	242	301	1	ENST00000355739.4:c.3248C>A	p.Thr1083Lys	p.T1083K	ENST00000355739	NM_000123.3	1083	aCa/aAa																																												NEWRECORD																																		
NOTCH3	0	MSKCC	GRCh37	19	15290228	15290228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	425	665	1	ENST00000263388.2:c.3407C>T	p.Ser1136Leu	p.S1136L	ENST00000263388	NM_000435.2	1136	tCa/tTa																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47637479	47637479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	210	323	0	ENST00000233146.2:c.613G>A	p.Glu205Lys	p.E205K	ENST00000233146	NM_000251.2	205	Gag/Aag																																												NEWRECORD																																		
SF3B1	0	MSKCC	GRCh37	2	198273135	198273135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	299	482	0	ENST00000335508.6:c.1075C>T	p.Pro359Ser	p.P359S	ENST00000335508	NM_012433.2	359	Cca/Tca																																												NEWRECORD																																		
IDH1	0	MSKCC	GRCh37	2	209113155	209113155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	189	295	0	ENST00000345146.2:c.352C>T	p.Pro118Ser	p.P118S	ENST00000345146	NM_005896.2	118	Ccc/Tcc																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31385068	31385068	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	276	374	0	ENST00000328111.2:c.1453C>T	p.Arg485Ter	p.R485*	ENST00000328111	NM_006892.3	485	Cga/Tga																																												NEWRECORD																																		
GNAS	0	MSKCC	GRCh37	20	57485864	57485864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	191	283	0	ENST00000371085.3:c.1165C>T	p.Arg389Cys	p.R389C	ENST00000371085	NM_000516.4	389	Cgt/Tgt																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30032752	30032752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	452	266	0	ENST00000338641.4:c.127G>A	p.Gly43Arg	p.G43R	ENST00000338641	NM_000268.3	43	Ggg/Agg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52702657	52702657	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			70	119	257	0	ENST00000394830.3:c.241C>T	p.Gln81Ter	p.Q81*	ENST00000394830	NM_018313.4	81	Caa/Taa																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89259571	89259571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	191	256	0	ENST00000336596.2:c.715C>T	p.Pro239Ser	p.P239S	ENST00000336596	NM_005233.5	239	Cct/Tct																																												NEWRECORD																																		
EPHB1	0	MSKCC	GRCh37	3	134851633	134851633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	243	323	3	ENST00000398015.3:c.1039G>A	p.Glu347Lys	p.E347K	ENST00000398015	NM_004441.4	347	Gag/Aag																																												NEWRECORD																																		
PRKCI	0	MSKCC	GRCh37	3	169988252	169988252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	116	369	0	ENST00000295797.4:c.494G>A	p.Gly165Glu	p.G165E	ENST00000295797	NM_002740.5	165	gGa/gAa																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1280395	1280395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	327	475	1	ENST00000310581.5:c.1828C>T	p.Arg610Trp	p.R610W	ENST00000310581	NM_198253.2	610	Cgg/Tgg																																												NEWRECORD																																		
APC	0	MSKCC	GRCh37	5	112177943	112177943	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	233	314	1	ENST00000257430.4:c.6652C>T	p.Gln2218Ter	p.Q2218*	ENST00000257430	NM_000038.5	2218	Caa/Taa																																												NEWRECORD																																		
EPHA7	0	MSKCC	GRCh37	6	94120359	94120359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014242-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	140	200	0	ENST00000369303.4:c.692G>A	p.Arg231Gln	p.R231Q	ENST00000369303	NM_004440.3	231	cGa/cAa																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	213	415	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1294042	1294042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	516	739	0	ENST00000310581.5:c.959C>T	p.Pro320Leu	p.P320L	ENST00000310581	NM_198253.2	320	cCt/cTt																																												NEWRECORD																																		
IGF1	0	MSKCC	GRCh37	12	102811603	102811603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	258	461	0	ENST00000307046.8:c.581G>A	p.Gly194Glu	p.G194E	ENST00000307046	NM_001111285.1	194	gGa/gAa																																												NEWRECORD																																		
ERRFI1	0	MSKCC	GRCh37	1	8073739	8073740	+	missense_variant	Missense_Mutation	DNP	GA	GA	AG			P-0014969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	129	260	1	ENST00000377482.5:c.919_920delTCinsCT	p.Ser307Leu	p.S307L	ENST00000377482	NM_018948.3	307	TCg/CTg																																												NEWRECORD																																		
RET	0	MSKCC	GRCh37	10	43607612	43607612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	338	604	0	ENST00000355710.3:c.1588G>A	p.Glu530Lys	p.E530K	ENST00000355710	NM_020975.4	530	Gag/Aag																																												NEWRECORD																																		
BIRC3	0	MSKCC	GRCh37	11	102195362	102195362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	232	392	0	ENST00000263464.3:c.122C>T	p.Ala41Val	p.A41V	ENST00000263464	NM_001165.4	41	gCt/gTt																																												NEWRECORD																																		
PRKAR1A	0	MSKCC	GRCh37	17	66526545	66526545	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	232	390	0	ENST00000358598.2:c.1101A>T	p.Lys367Asn	p.K367N	ENST00000358598	NM_212471.2	367	aaA/aaT																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204735558	204735558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	192	424	1	ENST00000302823.3:c.359G>A	p.Arg120Lys	p.R120K	ENST00000302823	NM_005214.4	120	aGg/aAg																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215645759	215645759	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			477	243	450	1	ENST00000260947.4:c.839T>A	p.Leu280Ter	p.L280*	ENST00000260947	NM_000465.2	280	tTa/tAa																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30057311	30057312	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0014969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	246	361	0	ENST00000338641.4:c.793_794delTCinsCT	p.Ser265Leu	p.S265L	ENST00000338641	NM_000268.3	265	TCg/CTg																																												NEWRECORD																																		
NF2	0	MSKCC	GRCh37	22	30069424	30069424	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	283	456	0	ENST00000338641.4:c.1289T>G	p.Val430Gly	p.V430G	ENST00000338641	NM_000268.3	430	gTg/gGg																																												NEWRECORD																																		
RICTOR	0	MSKCC	GRCh37	5	39074463	39074463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	269	381	0	ENST00000357387.3:c.17G>A	p.Arg6His	p.R6H	ENST00000357387	NM_152756.3	6	cGc/cAc																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	68981339	68981339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014969-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	122	370	0	ENST00000288368.4:c.1411C>T	p.Pro471Ser	p.P471S	ENST00000288368	NM_024870.2	471	Cca/Tca																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	238	1851	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	48	651	3				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
ERCC2	0	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	152	1618	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc																																												NEWRECORD																																		
MTOR	0	MSKCC	GRCh37	1	11188515	11188515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	206	1824	1	ENST00000361445.4:c.5906C>A	p.Pro1969His	p.P1969H	ENST00000361445	NM_004958.3	1969	cCc/cAc																																												NEWRECORD																																		
PDCD1	0	MSKCC	GRCh37	2	242794982	242794982	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	66	2265	0	ENST00000334409.5:c.227C>G	p.Thr76Arg	p.T76R	ENST00000334409	NM_005018.2	76	aCg/aGg																																												NEWRECORD																																		
PBRM1	0	MSKCC	GRCh37	3	52663040	52663040	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	132	975	0	ENST00000394830.3:c.1313A>G	p.Lys438Arg	p.K438R	ENST00000394830	NM_018313.4	438	aAg/aGg																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55561758	55561758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	187	1396	0	ENST00000288135.5:c.148G>A	p.Val50Met	p.V50M	ENST00000288135	NM_000222.2	50	Gtg/Atg																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593383	55593383	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	244	1553	0	ENST00000288135.5:c.1541-1G>A		p.X514_splice	ENST00000288135	NM_000222.2	514																																													NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187541786	187541786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	365	2010	0	ENST00000441802.2:c.5954C>T	p.Ser1985Phe	p.S1985F	ENST00000441802	NM_005245.3	1985	tCt/tTt																																												NEWRECORD																																		
NOTCH4	0	MSKCC	GRCh37	6	32163342	32163342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	297	2273	3	ENST00000375023.3:c.5884G>A	p.Ala1962Thr	p.A1962T	ENST00000375023	NM_004557.3	1962	Gcc/Acc																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117658334	117658334	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1378	182	2541	0	ENST00000368508.3:c.5248+1G>A		p.X1750_splice	ENST00000368508	NM_002944.2	1750																																													NEWRECORD																																		
BRAF	0	MSKCC	GRCh37	7	140476791	140476791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	269	2008	1	ENST00000288602.6:c.1615C>T	p.His539Tyr	p.H539Y	ENST00000288602	NM_004333.4	539	Cac/Tac																																												NEWRECORD																																		
PTCH1	0	MSKCC	GRCh37	9	98211407	98211407	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	206	1769	0	ENST00000331920.6:c.3748C>G	p.Pro1250Ala	p.P1250A	ENST00000331920	NM_000264.3	1250	Cct/Gct																																												NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70405958	70405958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	146	2185	3	ENST00000373644.4:c.3472C>T	p.Arg1158Trp	p.R1158W	ENST00000373644	NM_030625.2	1158	Cgg/Tgg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115112365	115112365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	41	771	1	ENST00000257566.3:c.1375C>A	p.Arg459Ser	p.R459S	ENST00000257566	NM_016569.3	459	Cgc/Agc																																												NEWRECORD																																		
IGF1R	0	MSKCC	GRCh37	15	99459321	99459321	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	146	1841	1	ENST00000268035.6:c.1957C>T	p.Gln653Ter	p.Q653*	ENST00000268035	NM_000875.3	653	Cag/Tag																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3788632	3788632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	133	2026	0	ENST00000262367.5:c.4322G>A	p.Arg1441Gln	p.R1441Q	ENST00000262367	NM_004380.2	1441	cGg/cAg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3900578	3900578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	218	1747	0	ENST00000262367.5:c.518C>T	p.Pro173Leu	p.P173L	ENST00000262367	NM_004380.2	173	cCt/cTt																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14031641	14031641	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	94	1782	0	ENST00000311895.7:c.1830C>G	p.Tyr610Ter	p.Y610*	ENST00000311895	NM_005236.2	610	taC/taG																																												NEWRECORD																																		
PLCG2	0	MSKCC	GRCh37	16	81960742	81960742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	134	2315	0	ENST00000359376.3:c.2473G>C	p.Glu825Gln	p.E825Q	ENST00000359376	NM_002661.3	825	Gag/Cag																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37682506	37682506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	289	2001	2	ENST00000447079.4:c.3697G>T	p.Asp1233Tyr	p.D1233Y	ENST00000447079	NM_015083.1	1233	Gac/Tac																																												NEWRECORD																																		
ERBB2	0	MSKCC	GRCh37	17	37863258	37863258	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	273	1803	1	ENST00000269571.5:c.89A>G	p.Asp30Gly	p.D30G	ENST00000269571		30	gAc/gGc																																												NEWRECORD																																		
SPOP	0	MSKCC	GRCh37	17	47699354	47699354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	149	1928	0	ENST00000347630.2:c.154A>G	p.Ile52Val	p.I52V	ENST00000347630	NM_001007230.1	52	Att/Gtt																																												NEWRECORD																																		
CALR	0	MSKCC	GRCh37	19	13051258	13051258	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	353	2260	1	ENST00000316448.5:c.694A>T	p.Lys232Ter	p.K232*	ENST00000316448	NM_004343.3	232	Aag/Tag																																												NEWRECORD																																		
EP300	0	MSKCC	GRCh37	22	41537104	41537104	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	238	1861	0	ENST00000263253.7:c.1931T>C	p.Leu644Pro	p.L644P	ENST00000263253	NM_001429.3	644	cTa/cCa																																												NEWRECORD																																		
ZRSR2	0	MSKCC	GRCh37	X	15809122	15809122	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	328	1122	1	ENST00000307771.7:c.107G>A	p.Arg36Gln	p.R36Q	ENST00000307771	NM_005089.3	36	cGa/cAa																																												NEWRECORD																																		
KDM6A	0	MSKCC	GRCh37	X	44870204	44870204	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	333	995	0	ENST00000377967.4:c.385-2A>G		p.X129_splice	ENST00000377967	NM_021140.2	129																																													NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32913666	32913716	+	inframe_deletion	In_Frame_Del	DEL	CTGAAAATGACAAAAATCATCTCTCCGAAAAACAAGATACTTATTTAAGTA	CTGAAAATGACAAAAATCATCTCTCCGAAAAACAAGATACTTATTTAAGTA	-			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1499	288	2757	3	ENST00000380152.3:c.5174_5224delCTGAAAATGACAAAAATCATCTCTCCGAAAAACAAGATACTTATTTAAGTA	p.Ala1725_Asn1742delinsAsp	p.A1725_N1742delinsD	ENST00000380152		1725	gCTGAAAATGACAAAAATCATCTCTCCGAAAAACAAGATACTTATTTAAGTAac/gac																																												NEWRECORD																																		
RUNX1	0	MSKCC	GRCh37	21	36252973	36253000	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAGAGTGCCATCTGGAACATCCCCTA	ACCAGAGTGCCATCTGGAACATCCCCTA	-			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	134	1464	0	ENST00000300305.3:c.362_389delTAGGGGATGTTCCAGATGGCACTCTGGT	p.Leu121ProfsTer3	p.L121Pfs*3	ENST00000300305		121	cTAGGGGATGTTCCAGATGGCACTCTGGTc/cc																																												NEWRECORD																																		
RBM10	0	MSKCC	GRCh37	X	47045868	47045876	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACAGGCCC	CACAGGCCC	-			P-0005372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	175	842	0	ENST00000329236.7:c.2434-5_2437delCACAGGCCC		p.X812_splice	ENST00000329236	NM_001204466.1	812																																													NEWRECORD																																		
KRAS	0	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0014459-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	27	394	0	ENST00000256078.4:c.34_35delGGinsCT	p.Gly12Leu	p.G12L	ENST00000256078	NM_033360.2	12	GGt/CTt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	475	432	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc																																												NEWRECORD																																		
GRIN2A	0	MSKCC	GRCh37	16	9928063	9928063	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	90	304	0	ENST00000330684.3:c.1676T>A	p.Val559Glu	p.V559E	ENST00000330684	NM_001134407.1	559	gTg/gAg																																												NEWRECORD																																		
CYLD	0	MSKCC	GRCh37	16	50813908	50813908	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	226	477	0	ENST00000398568.2:c.1462A>G	p.Ile488Val	p.I488V	ENST00000398568	NM_001042412.1	488	Atc/Gtc																																												NEWRECORD																																		
CARD11	0	MSKCC	GRCh37	7	2959159	2959159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	276	508	0	ENST00000396946.4:c.2357G>T	p.Ser786Ile	p.S786I	ENST00000396946	NM_032415.4	786	aGc/aTc																																												NEWRECORD																																		
RXRA	0	MSKCC	GRCh37	9	137323819	137323819	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1588	479	538	0	ENST00000481739.1:c.1112G>A	p.Arg371His	p.R371H	ENST00000481739	NM_002957.4	371	cGc/cAc																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76939038	76939038	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	81	367	0	ENST00000373344.5:c.1710C>G	p.Asn570Lys	p.N570K	ENST00000373344	NM_000489.3	570	aaC/aaG																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123195690	123195690	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014723-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	102	529	0	ENST00000218089.9:c.1604G>C	p.Cys535Ser	p.C535S	ENST00000218089	NM_001042749.1	535	tGt/tCt																																												NEWRECORD																																		
MAP2K1	0	MSKCC	GRCh37	15	66729099	66729104	+	inframe_deletion	In_Frame_Del	DEL	ATCAAA	ATCAAA	-			P-0015010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	245	674	0	ENST00000307102.5:c.307_312delATCAAA	p.Ile103_Lys104del	p.I103_K104del	ENST00000307102	NM_002755.3	103	ATCAAA/-																																												NEWRECORD																																		
GATA3	0	MSKCC	GRCh37	10	8100796	8100796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015010-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	101	673	0	ENST00000346208.3:c.770C>T	p.Ser257Phe	p.S257F	ENST00000346208		257	tCc/tTc																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46245033	46245033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	196	817	0	ENST00000334344.6:c.3127C>T	p.Gln1043Ter	p.Q1043*	ENST00000334344	NM_152641.2	1043	Caa/Taa																																												NEWRECORD																																		
INPP4B	0	MSKCC	GRCh37	4	143067050	143067050	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	90	774	0	ENST00000262992.4:c.1663A>C	p.Asn555His	p.N555H	ENST00000262992	NM_001101669.1	555	Aac/Cac																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			357	80	104	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120458129	120458129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			658	347	362	0	ENST00000256646.2:c.7216G>T	p.Gly2406Cys	p.G2406C	ENST00000256646	NM_024408.3	2406	Ggt/Tgt																																												NEWRECORD																																		
NOTCH2	0	MSKCC	GRCh37	1	120459060	120459060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			772	117	321	0	ENST00000256646.2:c.6285G>T	p.Lys2095Asn	p.K2095N	ENST00000256646	NM_024408.3	2095	aaG/aaT																																												NEWRECORD																																		
DDR2	0	MSKCC	GRCh37	1	162743294	162743294	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			688	131	270	0	ENST00000367921.3:c.1764C>G	p.Phe588Leu	p.F588L	ENST00000367921	NM_006182.2	588	ttC/ttG																																												NEWRECORD																																		
TGFBR2	7048	MSKCC	GRCh37	3	30713870	30713870	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1023568316		P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			537	136	244	0	ENST00000359013.4:c.1270G>C	p.Gly424Arg	p.G424R	ENST00000359013	NM_001024847.2	424	Ggg/Cgg																																												NEWRECORD																																		
RHOA	0	MSKCC	GRCh37	3	49412983	49412983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			689	188	373	0	ENST00000418115.1:c.40G>A	p.Gly14Arg	p.G14R	ENST00000418115	NM_001664.2	14	Gga/Aga																																												NEWRECORD																																		
PIK3CA	0	MSKCC	GRCh37	3	178922298	178922298	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			711	182	293	0	ENST00000263967.3:c.1067T>C	p.Val356Ala	p.V356A	ENST00000263967	NM_006218.2	356	gTt/gCt																																												NEWRECORD																																		
SMO	0	MSKCC	GRCh37	7	128848618	128848618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			749	145	361	0	ENST00000249373.3:c.1283C>T	p.Ser428Phe	p.S428F	ENST00000249373	NM_005631.4	428	tCc/tTc																																												NEWRECORD																																		
RPS6KA4	0	MSKCC	GRCh37	11	64129358	64129358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			743	188	499	0	ENST00000334205.4:c.790C>T	p.Arg264Trp	p.R264W	ENST00000334205	NM_003942.2	264	Cgg/Tgg																																												NEWRECORD																																		
MLL	0	MSKCC	GRCh37	11	118370572	118370572	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			387	390	340	0	ENST00000534358.1:c.6102A>C	p.Leu2034Phe	p.L2034F	ENST00000534358	NM_005933.3	2034	ttA/ttC																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18793366	18793366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			1148	241	346	0	ENST00000266497.5:c.4063C>T	p.Leu1355Phe	p.L1355F	ENST00000266497		1355	Ctc/Ttc																																												NEWRECORD																																		
SMARCD1	0	MSKCC	GRCh37	12	50479288	50479288	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			397	120	364	0	ENST00000394963.4:c.136C>G	p.Gln46Glu	p.Q46E	ENST00000394963	NM_003076.4	46	Caa/Gaa																																												NEWRECORD																																		
AKT1	0	MSKCC	GRCh37	14	105239627	105239627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			801	189	435	0	ENST00000349310.3:c.918G>A	p.Met306Ile	p.M306I	ENST00000349310	NM_001014432.1	306	atG/atA																																												NEWRECORD																																		
ERCC4	0	MSKCC	GRCh37	16	14029237	14029237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			769	219	373	0	ENST00000311895.7:c.1448G>C	p.Arg483Thr	p.R483T	ENST00000311895	NM_005236.2	483	aGa/aCa																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5221123	5221123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			327	119	265	0	ENST00000357368.4:c.3343G>A	p.Ala1115Thr	p.A1115T	ENST00000357368	NM_002850.3	1115	Gcc/Acc																																												NEWRECORD																																		
JAK3	0	MSKCC	GRCh37	19	17942138	17942138	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			398	135	377	0	ENST00000458235.1:c.2877C>G	p.Ser959Arg	p.S959R	ENST00000458235	NM_000215.3	959	agC/agG																																												NEWRECORD																																		
PAK7	0	MSKCC	GRCh37	20	9560921	9560921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			375	356	429	0	ENST00000353224.5:c.861G>T	p.Arg287Ser	p.R287S	ENST00000353224	NM_177990.2	287	agG/agT																																												NEWRECORD																																		
ATRX	0	MSKCC	GRCh37	X	76938964	76938964	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			1137	359	757	0	ENST00000373344.5:c.1784T>A	p.Leu595His	p.L595H	ENST00000373344	NM_000489.3	595	cTt/cAt																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123185005	123185005	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			811	842	615	1	ENST00000218089.9:c.1052T>A	p.Leu351Gln	p.L351Q	ENST00000218089	NM_001042749.1	351	cTa/cAa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8389292	8389298	+	frameshift_variant	Frame_Shift_Del	DEL	CATTCTC	CATTCTC	-			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			948	159	500	0	ENST00000356435.5:c.4320_4326delGAGAATG	p.Trp1440Ter	p.W1440*	ENST00000356435		1440	tgGAGAATG/tg																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187525118	187525118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			161	64	95	0	ENST00000441802.2:c.10562G>C	p.Gly3521Ala	p.G3521A	ENST00000441802	NM_005245.3	3521	gGa/gCa																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187629919	187629919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			570	168	433	0	ENST00000441802.2:c.1063G>C	p.Val355Leu	p.V355L	ENST00000441802	NM_005245.3	355	Gtg/Ctg																																												NEWRECORD																																		
TERT	0	MSKCC	GRCh37	5	1279457	1279457	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			695	115	335	0	ENST00000310581.5:c.2079C>A	p.Phe693Leu	p.F693L	ENST00000310581	NM_198253.2	693	ttC/ttA																																												NEWRECORD																																		
NBN	0	MSKCC	GRCh37	8	90958429	90958429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			571	189	345	0	ENST00000265433.3:c.2009G>C	p.Arg670Thr	p.R670T	ENST00000265433	NM_002485.4	670	aGa/aCa																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8341902	8341902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			864	194	465	0	ENST00000356435.5:c.4738G>T	p.Asp1580Tyr	p.D1580Y	ENST00000356435		1580	Gat/Tat																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32900287	32900287	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			630	173	291	0	ENST00000380152.3:c.475G>T	p.Val159Leu	p.V159L	ENST00000380152		159	Gtg/Ttg																																												NEWRECORD																																		
CREBBP	0	MSKCC	GRCh37	16	3789661	3789661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000043-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			612	210	492	0	ENST00000262367.5:c.4198G>A	p.Glu1400Lys	p.E1400K	ENST00000262367	NM_004380.2	1400	Gag/Aag																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	137	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt																																												NEWRECORD																																		
MPL	0	MSKCC	GRCh37	1	43803899	43803899	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61754776		P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	111	383	0	ENST00000372470.3:c.209C>T	p.Pro70Leu	p.P70L	ENST00000372470	NM_005373.2	70	cCg/cTg																																												NEWRECORD																																		
KEAP1	0	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	155	474	1	ENST00000171111.5:c.994G>T	p.Gly332Cys	p.G332C	ENST00000171111	NM_203500.1	332	Ggc/Tgc																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221303	1221307	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGA	GGCGA	-			P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	161	628	0	ENST00000326873.7:c.826_830delGGCGA	p.Gly276LeufsTer7	p.G276Lfs*7	ENST00000326873	NM_000455.4	276	GGCGAc/c																																												NEWRECORD																																		
CUL3	0	MSKCC	GRCh37	2	225368482	225368482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	160	460	0	ENST00000264414.4:c.1264A>T	p.Met422Leu	p.M422L	ENST00000264414	NM_003590.4	422	Atg/Ttg																																												NEWRECORD																																		
PIK3R1	0	MSKCC	GRCh37	5	67576823	67576823	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	46	189	0	ENST00000274335.5:c.905A>T	p.Gln302Leu	p.Q302L	ENST00000274335		302	cAg/cTg																																												NEWRECORD																																		
HIST1H3B	0	MSKCC	GRCh37	6	26032198	26032199	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	111	723	0	ENST00000244661.2:c.90_91delGC	p.Pro31GlyfsTer67	p.P31Gfs*67	ENST00000244661	NM_003537.3	30	gcGCcg/gccg																																												NEWRECORD																																		
HGF	0	MSKCC	GRCh37	7	81350155	81350155	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	107	407	0	ENST00000222390.5:c.1177C>G	p.Arg393Gly	p.R393G	ENST00000222390	NM_000601.4	393	Cgt/Ggt																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			910	564	693	1	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a																																												NEWRECORD																																		
CDKN2A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	278	470	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																												NEWRECORD																																		
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			414	278	470	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc																																												NEWRECORD																																		
CDKN1B	0	MSKCC	GRCh37	12	12870952	12870952	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			481	171	342	0	ENST00000228872.4:c.179G>A	p.Trp60Ter	p.W60*	ENST00000228872	NM_004064.3	60	tGg/tAg																																												NEWRECORD																																		
FAT1	2195	MSKCC	GRCh37	4	187518020	187518020	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755404071		P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			408	218	404	0	ENST00000441802.2:c.12674C>T	p.Thr4225Met	p.T4225M	ENST00000441802	NM_005245.3	4225	aCg/aTg																																												NEWRECORD																																		
ARID1A	0	MSKCC	GRCh37	1	27101327	27101327	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			720	493	574	0	ENST00000324856.7:c.4609C>T	p.Gln1537Ter	p.Q1537*	ENST00000324856	NM_006015.4	1537	Cag/Tag																																												NEWRECORD																																		
MSH2	0	MSKCC	GRCh37	2	47630396	47630396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			757	594	579	0	ENST00000233146.2:c.66C>G	p.Phe22Leu	p.F22L	ENST00000233146	NM_000251.2	22	ttC/ttG																																												NEWRECORD																																		
PMS1	0	MSKCC	GRCh37	2	190728779	190728779	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			592	347	337	0	ENST00000441310.2:c.2167G>T	p.Glu723Ter	p.E723*	ENST00000441310	NM_000534.4	723	Gaa/Taa																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212295792	212295792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			934	411	488	0	ENST00000342788.4:c.2521C>T	p.His841Tyr	p.H841Y	ENST00000342788	NM_005235.2	841	Cat/Tat																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215646195	215646195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			455	277	271	0	ENST00000260947.4:c.403G>T	p.Asp135Tyr	p.D135Y	ENST00000260947	NM_000465.2	135	Gat/Tat																																												NEWRECORD																																		
INHA	0	MSKCC	GRCh37	2	220440045	220440045	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1336	367	814	0	ENST00000243786.2:c.898C>A	p.Pro300Thr	p.P300T	ENST00000243786	NM_002191.3	300	Cca/Aca																																												NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89390065	89390065	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			235	202	167	0	ENST00000336596.2:c.815-1G>T		p.X272_splice	ENST00000336596	NM_005233.5	272																																													NEWRECORD																																		
EPHA3	0	MSKCC	GRCh37	3	89390221	89390221	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			271	254	240	0	ENST00000336596.2:c.970C>G	p.Arg324Gly	p.R324G	ENST00000336596	NM_005233.5	324	Cga/Gga																																												NEWRECORD																																		
ATR	0	MSKCC	GRCh37	3	142204114	142204114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			786	166	422	0	ENST00000350721.4:c.6089C>A	p.Ala2030Glu	p.A2030E	ENST00000350721	NM_001184.3	2030	gCg/gAg																																												NEWRECORD																																		
ROS1	0	MSKCC	GRCh37	6	117609749	117609749	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			360	404	441	0	ENST00000368508.3:c.6950A>G	p.Gln2317Arg	p.Q2317R	ENST00000368508	NM_002944.2	2317	cAa/cGa																																												NEWRECORD																																		
PMS2	0	MSKCC	GRCh37	7	6026817	6026817	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			596	148	367	0	ENST00000265849.7:c.1579A>T	p.Arg527Trp	p.R527W	ENST00000265849	NM_000535.5	527	Agg/Tgg																																												NEWRECORD																																		
MET	0	MSKCC	GRCh37	7	116339742	116339742	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			382	144	278	0	ENST00000397752.3:c.604A>G	p.Asn202Asp	p.N202D	ENST00000397752	NM_000245.2	202	Aat/Gat																																												NEWRECORD																																		
KDM5A	0	MSKCC	GRCh37	12	463372	463372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	336	369	0	ENST00000399788.2:c.899G>T	p.Gly300Val	p.G300V	ENST00000399788	NM_001042603.1	300	gGt/gTt																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49420870	49420870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	430	393	0	ENST00000301067.7:c.14879G>A	p.Arg4960Gln	p.R4960Q	ENST00000301067	NM_003482.3	4960	cGa/cAa																																												NEWRECORD																																		
FLT1	0	MSKCC	GRCh37	13	28919668	28919668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			409	415	424	0	ENST00000282397.4:c.2269C>A	p.Leu757Met	p.L757M	ENST00000282397	NM_002019.4	757	Ctg/Atg																																												NEWRECORD																																		
BRCA2	0	MSKCC	GRCh37	13	32910950	32910950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	410	409	0	ENST00000380152.3:c.2458G>T	p.Asp820Tyr	p.D820Y	ENST00000380152		820	Gat/Tat																																												NEWRECORD																																		
GREM1	0	MSKCC	GRCh37	15	33023262	33023262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			854	281	625	0	ENST00000300177.4:c.371C>A	p.Ser124Tyr	p.S124Y	ENST00000300177	NM_001191322.1	124	tCt/tAt																																												NEWRECORD																																		
PDPK1	0	MSKCC	GRCh37	16	2647734	2647734	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			293	440	446	0	ENST00000342085.4:c.1637G>C	p.Arg546Pro	p.R546P	ENST00000342085	NM_002613.4	546	cGa/cCa																																												NEWRECORD																																		
SMAD4	0	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			387	202	403	0	ENST00000342988.3:c.1529G>C	p.Gly510Ala	p.G510A	ENST00000342988	NM_005359.5	510	gGa/gCa																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			566	595	631	0	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5219979	5219979	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			474	483	614	0	ENST00000357368.4:c.3736G>T	p.Val1246Leu	p.V1246L	ENST00000357368	NM_002850.3	1246	Gtg/Ttg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40713421	40713421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			961	419	519	1	ENST00000373198.4:c.4094C>A	p.Thr1365Lys	p.T1365K	ENST00000373198	NM_133170.3	1365	aCg/aAg																																												NEWRECORD																																		
STAG2	0	MSKCC	GRCh37	X	123195724	123195724	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			782	190	543	0	ENST00000218089.9:c.1638G>T	p.Arg546Ser	p.R546S	ENST00000218089	NM_001042749.1	546	agG/agT																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89831437	89831437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			733	242	602	0	ENST00000389301.3:c.2639G>T	p.Arg880Leu	p.R880L	ENST00000389301	NM_000135.2	880	cGa/cTa																																												NEWRECORD																																		
CALR	0	MSKCC	GRCh37	19	13054635	13054635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			615	228	430	1	ENST00000316448.5:c.1162G>T	p.Asp388Tyr	p.D388Y	ENST00000316448	NM_004343.3	388	Gat/Tat																																												NEWRECORD																																		
RTEL1	0	MSKCC	GRCh37	20	62305356	62305356	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			976	508	615	1	ENST00000508582.2:c.901G>T	p.Asp301Tyr	p.D301Y	ENST00000508582		301	Gac/Tac																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	69033167	69033167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			836	383	407	0	ENST00000288368.4:c.3607G>A	p.Glu1203Lys	p.E1203K	ENST00000288368	NM_024870.2	1203	Gaa/Aaa																																												NEWRECORD																																		
PREX2	0	MSKCC	GRCh37	8	69104579	69104579	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	487	529	0	ENST00000288368.4:c.4423C>A	p.Pro1475Thr	p.P1475T	ENST00000288368	NM_024870.2	1475	Cct/Act																																												NEWRECORD																																		
PRDM14	0	MSKCC	GRCh37	8	70971021	70971021	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006793-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1627	226	622	0	ENST00000276594.2:c.1240T>G	p.Tyr414Asp	p.Y414D	ENST00000276594	NM_024504.3	414	Tac/Gac																																												NEWRECORD																																		
PIK3CB	0	MSKCC	GRCh37	3	138374296	138374296	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000086-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1015	303	451	0	ENST00000289153.2:c.3148A>G	p.Arg1050Gly	p.R1050G	ENST00000289153	NM_006219.2	1050	Agg/Ggg																																												NEWRECORD																																		
SMARCA4	0	MSKCC	GRCh37	19	11145590	11145590	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0000086-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	55	190	0	ENST00000344626.4:c.3952C>G	p.Arg1318Gly	p.R1318G	ENST00000344626	NM_003072.3	1318	Cgc/Ggc																																												NEWRECORD																																		
ERBB4	0	MSKCC	GRCh37	2	212426722	212426722	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000086-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			832	64	311	0	ENST00000342788.4:c.2393T>G	p.Leu798Arg	p.L798R	ENST00000342788	NM_005235.2	798	cTt/cGt																																												NEWRECORD																																		
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			101	719	482	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg																																												NEWRECORD																																		
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	164	456	0				ENST00000310581	NM_198253.2																																														NEWRECORD																																		
SHOC2	0	MSKCC	GRCh37	10	112771562	112771562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			100	362	448	0	ENST00000369452.4:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000369452	NM_007373.3	579	Cgt/Tgt																																												NEWRECORD																																		
PRKD1	0	MSKCC	GRCh37	14	30135385	30135385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	34	414	2	ENST00000331968.5:c.433C>T	p.Arg145Cys	p.R145C	ENST00000331968	NM_002742.2	145	Cgt/Tgt																																												NEWRECORD																																		
STK11	0	MSKCC	GRCh37	19	1226494	1226494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	276	734	2	ENST00000326873.7:c.1150C>T	p.Arg384Trp	p.R384W	ENST00000326873	NM_000455.4	384	Cgg/Tgg																																												NEWRECORD																																		
FGFR3	0	MSKCC	GRCh37	4	1807582	1807582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145183329		P-0014966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	196	720	1	ENST00000260795.2:c.1751C>T	p.Pro584Leu	p.P584L	ENST00000260795		584	cCg/cTg																																												NEWRECORD																																		
KDR	0	MSKCC	GRCh37	4	55961796	55961796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014966-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	179	449	0	ENST00000263923.4:c.2765G>A	p.Gly922Glu	p.G922E	ENST00000263923	NM_002253.2	922	gGa/gAa																																												NEWRECORD																																		
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			563	901	392	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt																																												NEWRECORD																																		
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	367	649	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag																																												NEWRECORD																																		
SUFU	0	MSKCC	GRCh37	10	104309784	104309784	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1355	558	548	0	ENST00000369902.3:c.375G>C	p.Lys125Asn	p.K125N	ENST00000369902	NM_016169.3	125	aaG/aaC																																												NEWRECORD																																		
BARD1	0	MSKCC	GRCh37	2	215595214	215595214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	181	339	0	ENST00000260947.4:c.1922G>A	p.Arg641Gln	p.R641Q	ENST00000260947	NM_000465.2	641	cGa/cAa																																												NEWRECORD																																		
RAD54L	0	MSKCC	GRCh37	1	46739698	46740201	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCTCCAAGGGACTCTGCTTTCTTGGGTCTTTTTAAAAAAATTTTTATTTTTAATTTTTTTTCCCCCTAATCATTGAAGCTTTATTTTCTTGGGTCTCGAATCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGATGTCCATTAAGAAGCGAGCCAAGGTTGTAGAACGCTTCAATAGTCCATCGGTAAATGCACATCCCCGTCCCCACACCACCAATGCAGTATCATCAGAATTAAGGAATGATAGAGAAGCTATAAGGGGTTACCTTGATTTTTTTTTTTTTTAATTCCCCTAGTGGATATAGTAGGATTTGTCTGGTTGGTGATGGCTGGGCTGGAAACTGACTGTGTGTGTTGGGATTGGCTGGCTGGTGAGCAGATAAACTGGTGGTTTTCACAATTGGTACTGAGTAGTATAGAGGCATGAGGGAGGAGCTGGTTGGGCTGAGCAGGATCCCAGTTTAGGCTATAAGAGGTTCCTTTTCTCCTGTTTCTTCT	CTCTCCAAGGGACTCTGCTTTCTTGGGTCTTTTTAAAAAAATTTTTATTTTTAATTTTTTTTCCCCCTAATCATTGAAGCTTTATTTTCTTGGGTCTCGAATCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGATGTCCATTAAGAAGCGAGCCAAGGTTGTAGAACGCTTCAATAGTCCATCGGTAAATGCACATCCCCGTCCCCACACCACCAATGCAGTATCATCAGAATTAAGGAATGATAGAGAAGCTATAAGGGGTTACCTTGATTTTTTTTTTTTTTAATTCCCCTAGTGGATATAGTAGGATTTGTCTGGTTGGTGATGGCTGGGCTGGAAACTGACTGTGTGTGTTGGGATTGGCTGGCTGGTGAGCAGATAAACTGGTGGTTTTCACAATTGGTACTGAGTAGTATAGAGGCATGAGGGAGGAGCTGGTTGGGCTGAGCAGGATCCCAGTTTAGGCTATAAGAGGTTCCTTTTCTCCTGTTTCTTCT	-			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	70	42	0	ENST00000371975.4:c.1611-110_1690-7delCTCCAAGGGACTCTGCTTTCTTGGGTCTTTTTAAAAAAATTTTTATTTTTAATTTTTTTTCCCCCTAATCATTGAAGCTTTATTTTCTTGGGTCTCGAATCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGATGTCCATTAAGAAGCGAGCCAAGGTTGTAGAACGCTTCAATAGTCCATCGGTAAATGCACATCCCCGTCCCCACACCACCAATGCAGTATCATCAGAATTAAGGAATGATAGAGAAGCTATAAGGGGTTACCTTGATTTTTTTTTTTTTTAATTCCCCTAGTGGATATAGTAGGATTTGTCTGGTTGGTGATGGCTGGGCTGGAAACTGACTGTGTGTGTTGGGATTGGCTGGCTGGTGAGCAGATAAACTGGTGGTTTTCACAATTGGTACTGAGTAGTATAGAGGCATGAGGGAGGAGCTGGTTGGGCTGAGCAGGATCCCAGTTTAGGCTATAAGAGGTTCCTTTTCTCCTGTTTCTTCTCT		p.X537_splice	ENST00000371975	NM_003579.3	537																																													NEWRECORD																																		
TET1	0	MSKCC	GRCh37	10	70451183	70451183	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1136	569	489	0	ENST00000373644.4:c.6023G>T	p.Gly2008Val	p.G2008V	ENST00000373644	NM_030625.2	2008	gGg/gTg																																												NEWRECORD																																		
MAPK3	0	MSKCC	GRCh37	16	30129017	30129017	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	308	560	0	ENST00000263025.4:c.749A>G	p.Tyr250Cys	p.Y250C	ENST00000263025	NM_002746.2	250	tAc/tGc																																												NEWRECORD																																		
FANCA	0	MSKCC	GRCh37	16	89806450	89806450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			724	302	563	0	ENST00000389301.3:c.3886G>C	p.Glu1296Gln	p.E1296Q	ENST00000389301	NM_000135.2	1296	Gag/Cag																																												NEWRECORD																																		
BRCA1	0	MSKCC	GRCh37	17	41276110	41276110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1185	256	394	0	ENST00000357654.3:c.4G>T	p.Asp2Tyr	p.D2Y	ENST00000357654	NM_007294.3	2	Gat/Tat																																												NEWRECORD																																		
RPTOR	0	MSKCC	GRCh37	17	78919480	78919480	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	292	573	0	ENST00000306801.3:c.3039G>C	p.Leu1013Phe	p.L1013F	ENST00000306801	NM_020761.2	1013	ttG/ttC																																												NEWRECORD																																		
CTLA4	0	MSKCC	GRCh37	2	204736142	204736142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	205	313	0	ENST00000302823.3:c.499C>A	p.Leu167Ile	p.L167I	ENST00000302823	NM_005214.4	167	Ctt/Att																																												NEWRECORD																																		
DNMT3B	0	MSKCC	GRCh37	20	31383257	31383257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			939	252	491	0	ENST00000328111.2:c.1169C>T	p.Ser390Phe	p.S390F	ENST00000328111	NM_006892.3	390	tCt/tTt																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46264656	46264656	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	107	196	0	ENST00000371998.3:c.1526C>G	p.Ser509Cys	p.S509C	ENST00000371998		509	tCt/tGt																																												NEWRECORD																																		
NCOA3	0	MSKCC	GRCh37	20	46265142	46265142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	161	249	0	ENST00000371998.3:c.2012C>G	p.Ser671Cys	p.S671C	ENST00000371998		671	tCc/tGc																																												NEWRECORD																																		
WWTR1	0	MSKCC	GRCh37	3	149374909	149374909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			967	581	577	0	ENST00000360632.3:c.185C>G	p.Ser62Trp	p.S62W	ENST00000360632	NM_015472.4	62	tCg/tGg																																												NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185155234	185155234	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	139	246	0	ENST00000265026.3:c.476-1G>C		p.X159_splice	ENST00000265026	NM_004721.4	159																																													NEWRECORD																																		
MAP3K13	0	MSKCC	GRCh37	3	185198315	185198315	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	400	411	1	ENST00000265026.3:c.2797G>A	p.Glu933Lys	p.E933K	ENST00000265026	NM_004721.4	933	Gag/Aag																																												NEWRECORD																																		
FAT1	0	MSKCC	GRCh37	4	187539454	187539454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	380	318	0	ENST00000441802.2:c.8286G>T	p.Leu2762Phe	p.L2762F	ENST00000441802	NM_005245.3	2762	ttG/ttT																																												NEWRECORD																																		
MSH3	0	MSKCC	GRCh37	5	80064721	80064721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	214	416	0	ENST00000265081.6:c.2152G>A	p.Glu718Lys	p.E718K	ENST00000265081	NM_002439.4	718	Gaa/Aaa																																												NEWRECORD																																		
PIM1	0	MSKCC	GRCh37	6	37141772	37141772	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	279	541	0	ENST00000373509.5:c.847G>C	p.Glu283Gln	p.E283Q	ENST00000373509	NM_002648.3	283	Gaa/Caa																																												NEWRECORD																																		
JAK2	0	MSKCC	GRCh37	9	5080560	5080560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	122	253	0	ENST00000381652.3:c.2311C>T	p.Gln771Ter	p.Q771*	ENST00000381652	NM_004972.3	771	Cag/Tag																																												NEWRECORD																																		
SYK	0	MSKCC	GRCh37	9	93641218	93641218	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			417	170	327	0	ENST00000375746.1:c.1564G>A	p.Asp522Asn	p.D522N	ENST00000375746	NM_001174167.1	522	Gat/Aat																																												NEWRECORD																																		
KDM5C	0	MSKCC	GRCh37	X	53222966	53222966	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014544-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	391	740	0	ENST00000375401.3:c.4106C>G	p.Ser1369Ter	p.S1369*	ENST00000375401	NM_004187.3	1369	tCa/tGa																																												NEWRECORD																																		
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	10	203	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578529	7578531	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0014016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	159	421	0	ENST00000269305.4:c.399_401delGTT	p.Met133_Phe134delinsIle	p.M133_F134delinsI	ENST00000269305	NM_001126112.2	133	atGTTt/att																																												NEWRECORD																																		
PTPRD	0	MSKCC	GRCh37	9	8528705	8528705	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	78	530	1	ENST00000356435.5:c.427G>A	p.Ala143Thr	p.A143T	ENST00000356435		143	Gcc/Acc																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	19	767	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	452	642	0	ENST00000288135.5:c.2466T>G	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaG																																												NEWRECORD																																		
PTPRS	0	MSKCC	GRCh37	19	5208338	5208338	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	460	955	0	ENST00000357368.4:c.5552A>G	p.Lys1851Arg	p.K1851R	ENST00000357368	NM_002850.3	1851	aAg/aGg																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593635	55593664	+	inframe_deletion	In_Frame_Del	DEL	TTATGTTTACATAGACCCAACACAACTTCC	TTATGTTTACATAGACCCAACACAACTTCC	-			P-0012564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	29	835	0	ENST00000288135.5:c.1706_1735del	p.Val569_Tyr578del	p.V569_Y578del	ENST00000288135	NM_000222.2	567	aaTTATGTTTACATAGACCCAACACAACTTCCt/aat																																												NEWRECORD																																		
MAX	0	MSKCC	GRCh37	14	65569047	65569047	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	434	947	0	ENST00000358664.4:c.11del	p.Asn4ThrfsTer61	p.N4Tfs*61	ENST00000358664	NM_002382.4	4	aAc/ac																																												NEWRECORD																																		
MLL2	0	MSKCC	GRCh37	12	49421798	49421798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000309-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1962	956	546	0	ENST00000301067.7:c.14509G>A	p.Gly4837Ser	p.G4837S	ENST00000301067	NM_003482.3	4837	Ggt/Agt																																												NEWRECORD																																		
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	422	617	1	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc																																												NEWRECORD																																		
CDK12	0	MSKCC	GRCh37	17	37627410	37627410	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	462	727	0	ENST00000447079.4:c.1325T>G	p.Leu442Trp	p.L442W	ENST00000447079	NM_015083.1	442	tTg/tGg																																												NEWRECORD																																		
TGFBR2	0	MSKCC	GRCh37	3	30733033	30733033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	57	362	0	ENST00000359013.4:c.1721G>A	p.Gly574Glu	p.G574E	ENST00000359013	NM_001024847.2	574	gGg/gAg																																												NEWRECORD																																		
TBX3	0	MSKCC	GRCh37	12	115114257	115114257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			493	102	362	0	ENST00000257566.3:c.960G>T	p.Gln320His	p.Q320H	ENST00000257566	NM_016569.3	320	caG/caT																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593667	55593669	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0013776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	283	600	0	ENST00000288135.5:c.1735_1737del	p.Asp579del	p.D579del	ENST00000288135	NM_000222.2	578	tATGat/tat																																												NEWRECORD																																		
PIK3C2G	0	MSKCC	GRCh37	12	18524178	18524178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	396	617	0	ENST00000266497.5:c.1690G>A	p.Gly564Arg	p.G564R	ENST00000266497		564	Ggg/Agg																																												NEWRECORD																																		
PTPRT	0	MSKCC	GRCh37	20	40979330	40979330	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	317	493	0	ENST00000373198.4:c.1803T>G	p.Asn601Lys	p.N601K	ENST00000373198	NM_133170.3	601	aaT/aaG																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55598150	55598150	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000134-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	220	398	0	ENST00000288135.5:c.2347C>G	p.Leu783Val	p.L783V	ENST00000288135	NM_000222.2	783	Ctc/Gtc																																												NEWRECORD																																		
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913514		P-0000134-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	51	344	0	ENST00000288135.5:c.2466T>A	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaA																																												NEWRECORD																																		
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000134-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			144	887	549	2	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg																																												NEWRECORD																																		
RB1	0	MSKCC	GRCh37	13	48951149	48951149	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000134-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	182	331	0	ENST00000267163.4:c.1312delT	p.Cys438ValfsTer19	p.C438Vfs*19	ENST00000267163	NM_000321.2	437	ggT/gg																																												NEWRECORD																																		
ARID2	0	MSKCC	GRCh37	12	46211458	46211475	+	inframe_deletion	In_Frame_Del	DEL	CTGCGTCAAAGTTATGGG	CTGCGTCAAAGTTATGGG	-			P-0013039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	29	286	0	ENST00000334344.6:c.427_444del	p.Arg143_Leu148del	p.R143_L148del	ENST00000334344	NM_152641.2	142	CTGCGTCAAAGTTATGGG/-																																												NEWRECORD																																		
KIT	0	MSKCC	GRCh37	4	55593662	55593664	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0013039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	223	436	0	ENST00000288135.5:c.1729_1731del	p.Pro577del	p.P577del	ENST00000288135	NM_000222.2	576	ctTCCt/ctt																																												NEWRECORD																																		
GNAQ	0	MSKCC	GRCh37	9	80430668	80430668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	117	536	0	ENST00000286548.4:c.340C>T	p.Arg114Ter	p.R114*	ENST00000286548	NM_002072.3	114	Cga/Tga					NEWRECORD																																																																									
SHQ1	0	MSKCC	GRCh37	3	72891539	72891539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			906	85	408	1	ENST00000325599.8:c.223C>T	p.Arg75Cys	p.R75C	ENST00000325599	NM_018130.2	75	Cgc/Tgc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434325	49434325	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1698	260	901	0	ENST00000301067.7:c.7228C>T	p.Arg2410Ter	p.R2410*	ENST00000301067	NM_003482.3	2410	Cga/Tga					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46736381	46736381	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	139	461	0	ENST00000371975.4:c.1093C>T	p.Arg365Ter	p.R365*	ENST00000371975	NM_003579.3	365	Cga/Tga					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32456255	32456255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1594	170	717	0	ENST00000332351.3:c.637C>T	p.Arg213Cys	p.R213C	ENST00000332351	NM_024426.4	213	Cgc/Tgc					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158594953	158594953	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	92	393	0	ENST00000263640.3:c.1394C>T	p.Pro465Leu	p.P465L	ENST00000263640	NM_001105.4	465	cCg/cTg					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46276052	46276052	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139321788		P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1266	112	599	2	ENST00000371998.3:c.3488G>A	p.Arg1163Gln	p.R1163Q	ENST00000371998		1163	cGg/cAg					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49397767	49397767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1649	183	656	0	ENST00000418115.1:c.457G>A	p.Ala153Thr	p.A153T	ENST00000418115	NM_001664.2	153	Gct/Act					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521724	89521725	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	108	418	0	ENST00000336596.2:c.2804_2805del	p.Val935GlyfsTer6	p.V935Gfs*6	ENST00000336596	NM_005233.5	934	gGT/g					NEWRECORD																																																																									
TAP2	0	MSKCC	GRCh37	6	32798210	32798210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	189	668	0	ENST00000374899.4:c.1469C>T	p.Thr490Met	p.T490M	ENST00000374899	NM_018833.2	490	aCg/aTg					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6042129	6042129	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	45	266	0	ENST00000265849.7:c.492del	p.Thr165HisfsTer36	p.T165Hfs*36	ENST00000265849	NM_000535.5	164	tcC/tc					NEWRECORD																																																																									
PREX2	0	MSKCC	GRCh37	8	68864648	68864648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	41	171	0	ENST00000288368.4:c.19G>A	p.Gly7Arg	p.G7R	ENST00000288368	NM_024870.2	7	Gga/Aga					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939412	76939412	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014569-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1146	65	611	0	ENST00000373344.5:c.1336G>T	p.Gly446Ter	p.G446*	ENST00000373344	NM_000489.3	446	Gga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	315	309	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52723067	52723067	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs770861676		P-0005741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	363	412	0	ENST00000322088.6:c.1252C>T	p.Arg418Trp	p.R418W	ENST00000322088	NM_014225.5	418	Cgg/Tgg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0005741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	429	369	2	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156845890	156845890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1624	420	834	0	ENST00000524377.1:c.1520G>A	p.Arg507His	p.R507H	ENST00000524377	NM_002529.3	507	cGc/cAc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49416618	49416618	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	180	383	0	ENST00000301067.7:c.16093C>T	p.Gln5365Ter	p.Q5365*	ENST00000301067	NM_003482.3	5365	Cag/Tag					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247186	153247186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001813-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			590	278	352	0	ENST00000281708.4:c.1616G>T	p.Gly539Val	p.G539V	ENST00000281708	NM_033632.3	539	gGg/gTg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118363799	118363799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001813-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			660	305	390	0	ENST00000534358.1:c.5032G>A	p.Glu1678Lys	p.E1678K	ENST00000534358	NM_005933.3	1678	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001813-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			339	213	271	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628638	187628638	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001813-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			821	352	472	0	ENST00000441802.2:c.2344delC	p.Arg782ValfsTer9	p.R782Vfs*9	ENST00000441802	NM_005245.3	782	Cgt/gt					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412039	116412050	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAAGGTATATT	AGAAGGTATATT	-			P-0001813-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			250	335	231	0	ENST00000397752.3:c.3024_3028+7delAGAAGGTATATT		p.X1008_splice	ENST00000397752	NM_000245.2	1008						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29548938	29548938	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001813-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			104	26	158	0	ENST00000358273.4:c.1714delG	p.Glu572ArgfsTer14	p.E572Rfs*14	ENST00000358273	NM_001042492.2	571	tGg/tg					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1279516	1279516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001813-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			948	231	339	0	ENST00000310581.5:c.2020G>A	p.Gly674Ser	p.G674S	ENST00000310581	NM_198253.2	674	Ggc/Agc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	41	322	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578525	7578525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	35	432	0	ENST00000269305.4:c.405C>A	p.Cys135Ter	p.C135*	ENST00000269305	NM_001126112.2	135	tgC/tgA					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436009	110436009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	163	199	0	ENST00000375856.3:c.2392G>A	p.Val798Ile	p.V798I	ENST00000375856	NM_003749.2	798	Gtt/Att					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	403	257	0	ENST00000269305.4:c.770T>G	p.Leu257Arg	p.L257R	ENST00000269305	NM_001126112.2	257	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576885	7576885	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	244	392	0	ENST00000269305.4:c.961A>T	p.Lys321Ter	p.K321*	ENST00000269305	NM_001126112.2	321	Aaa/Taa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8460504	8460504	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148300682		P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	160	322	0	ENST00000356435.5:c.3782C>T	p.Thr1261Met	p.T1261M	ENST00000356435		1261	aCg/aTg					NEWRECORD																																																																									
RAD52	0	MSKCC	GRCh37	12	1025543	1025543	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	299	364	0	ENST00000358495.3:c.832C>T	p.Arg278Ter	p.R278*	ENST00000358495	NM_134424.2	278	Cga/Tga					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65568283	65568283	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	271	248	0	ENST00000358664.4:c.44A>G	p.Gln15Arg	p.Q15R	ENST00000358664	NM_002382.4	15	cAa/cGa					NEWRECORD																																																																									
AURKB	0	MSKCC	GRCh37	17	8110085	8110085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199630207		P-0008552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	128	188	0	ENST00000585124.1:c.520G>A	p.Glu174Lys	p.E174K	ENST00000585124	NM_004217.3	174	Gag/Aag					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	116	224	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	252	244	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187524834	187524834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	282	294	0	ENST00000441802.2:c.10846G>A	p.Val3616Ile	p.V3616I	ENST00000441802	NM_005245.3	3616	Gta/Ata					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123196774	123196774	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	215	427	0	ENST00000218089.9:c.1661A>C	p.Lys554Thr	p.K554T	ENST00000218089	NM_001042749.1	554	aAg/aCg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0004689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1184	101	531	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	79	400	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0004689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	46	140	2	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	71	411	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52443757	52443757	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	90	243	1	ENST00000460680.1:c.40C>T	p.Leu14Phe	p.L14F	ENST00000460680	NM_004656.3	14	Ctc/Ttc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40733279	40733279	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201275244		P-0004689-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	93	342	1	ENST00000373198.4:c.3527G>A	p.Arg1176His	p.R1176H	ENST00000373198	NM_133170.3	1176	cGt/cAt					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65560500	65560500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002276-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			116	386	376	0	ENST00000358664.4:c.97C>T	p.Arg33Ter	p.R33*	ENST00000358664	NM_002382.4	33	Cga/Tga					NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0002617-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			375	99	475	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88681416	88681416	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002617-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			118	31	232	0	ENST00000372037.3:c.1306A>T	p.Ile436Phe	p.I436F	ENST00000372037	NM_004329.2	436	Atc/Ttc					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7217399	7217399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002617-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			203	74	575	0	ENST00000380728.2:c.397G>T	p.Gly133Trp	p.G133W	ENST00000380728		133	Ggg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001856-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1505	237	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599321	55599321	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001856-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	34	294	0	ENST00000288135.5:c.2447A>T	p.Asp816Val	p.D816V	ENST00000288135	NM_000222.2	816	gAc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	99	313	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266245	41266245	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0003717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	220	280	0	ENST00000349496.5:c.241+1G>T		p.X81_splice	ENST00000349496	NM_001904.3	81						NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55602973	55602973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	83	290	1	ENST00000288135.5:c.2683G>A	p.Ala895Thr	p.A895T	ENST00000288135	NM_000222.2	895	Gca/Aca					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473615	67473615	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	124	398	0	ENST00000327367.4:c.695G>A	p.Trp232Ter	p.W232*	ENST00000327367	NM_005902.3	232	tGg/tAg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266002	41266029	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTTCGTATTTATAGCTGATTTGATGGA	GTTTCGTATTTATAGCTGATTTGATGGA	-			P-0003717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	208	268	2	ENST00000349496.5:c.14-12_29del		p.X5_splice	ENST00000349496	NM_001904.3	5						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001402-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			631	21	507	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187518079	187518079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000731-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	113	468	0	ENST00000441802.2:c.12615G>C	p.Met4205Ile	p.M4205I	ENST00000441802	NM_005245.3	4205	atG/atC					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0000731-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	136	208	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31024509	31024509	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000731-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	94	295	0	ENST00000375687.4:c.3994G>T	p.Val1332Phe	p.V1332F	ENST00000375687	NM_015338.5	1332	Gtt/Ttt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937273	76937273	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000731-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			656	133	607	0	ENST00000373344.5:c.3475G>T	p.Glu1159Ter	p.E1159*	ENST00000373344	NM_000489.3	1159	Gag/Tag					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339747	116339750	+	frameshift_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0000731-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			719	115	342	0	ENST00000397752.3:c.610_613del	p.Ser204IlefsTer12	p.S204Ifs*12	ENST00000397752	NM_000245.2	203	tcTTCT/tc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116411885	116411901	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTTTCTCTCTGTTTTAA	CTTTCTCTCTGTTTTAA	-			P-0000731-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	165	166	0	ENST00000397752.3:c.2888-18_2888-2del		p.X963_splice	ENST00000397752	NM_000245.2	963						NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001692-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			360	121	484	2	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048221	180048221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001692-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			309	47	422	0	ENST00000261937.6:c.2052G>C	p.Leu684Phe	p.L684F	ENST00000261937	NM_182925.4	684	ttG/ttC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	69	162	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120480074	120480074	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	14	127	0	ENST00000256646.2:c.3353A>T	p.His1118Leu	p.H1118L	ENST00000256646	NM_024408.3	1118	cAc/cTc					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1803183	1803183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	41	235	2	ENST00000260795.2:c.535G>A	p.Ala179Thr	p.A179T	ENST00000260795		179	Gct/Act					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	477	165	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551522	150551522	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1669	133	478	0	ENST00000369026.2:c.485C>G	p.Ser162Trp	p.S162W	ENST00000369026	NM_021960.4	162	tCg/tGg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117715476	117715476	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	101	199	0	ENST00000368508.3:c.1013A>T	p.Tyr338Phe	p.Y338F	ENST00000368508	NM_002944.2	338	tAt/tTt					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150001469	150001469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	237	308	0	ENST00000253339.5:c.2135G>C	p.Gly712Ala	p.G712A	ENST00000253339		712	gGa/gCa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55220272	55220272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	744	295	0	ENST00000275493.2:c.662G>T	p.Gly221Val	p.G221V	ENST00000275493	NM_005228.3	221	gGg/gTg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509660	106509660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			960	233	272	1	ENST00000359195.3:c.1654C>A	p.Arg552Ser	p.R552S	ENST00000359195	NM_002649.2	552	Cgc/Agc					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148543611	148543611	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1170	224	291	0	ENST00000320356.2:c.197A>G	p.Gln66Arg	p.Q66R	ENST00000320356	NM_004456.4	66	cAg/cGg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49428233	49428233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	90	218	0	ENST00000301067.7:c.10467G>T	p.Gln3489His	p.Q3489H	ENST00000301067	NM_003482.3	3489	caG/caT					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103515144	103515144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	141	215	0	ENST00000355739.4:c.1645C>T	p.Leu549Phe	p.L549F	ENST00000355739	NM_000123.3	549	Ctt/Ttt					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610056	81610056	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	249	226	0	ENST00000298171.2:c.1654C>A	p.Leu552Ile	p.L552I	ENST00000298171	NM_000369.2	552	Ctc/Atc					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14038595	14038595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	281	173	0	ENST00000311895.7:c.1920G>C	p.Met640Ile	p.M640I	ENST00000311895	NM_005236.2	640	atG/atC					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67662454	67662454	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			806	160	281	0	ENST00000264010.4:c.1700G>T	p.Arg567Leu	p.R567L	ENST00000264010	NM_006565.3	567	cGg/cTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	386	328	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18277939	18277939	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0000785-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	60	160	0	ENST00000222254.8:c.1560-1G>T		p.X520_splice	ENST00000222254	NM_005027.3	520						NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135771923	135771923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	37	301	2	ENST00000298552.3:c.3194C>T	p.Thr1065Met	p.T1065M	ENST00000298552	NM_001162426.1	1065	aCg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	236	270	0	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	80	409	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55976872	55976872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			534	67	599	0	ENST00000263923.4:c.1040G>C	p.Arg347Pro	p.R347P	ENST00000263923	NM_002253.2	347	cGt/cCt					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	149982897	149982897	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	90	527	0	ENST00000253339.5:c.3361G>C	p.Glu1121Gln	p.E1121Q	ENST00000253339		1121	Gag/Cag					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37650937	37650937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	29	505	0	ENST00000447079.4:c.2409G>C	p.Lys803Asn	p.K803N	ENST00000447079	NM_015083.1	803	aaG/aaC					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593532	48593532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	31	351	0	ENST00000342988.3:c.1283A>T	p.Lys428Met	p.K428M	ENST00000342988	NM_005359.5	428	aAg/aTg					NEWRECORD																																																																									
XIAP	0	MSKCC	GRCh37	X	123020190	123020190	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	75	639	0	ENST00000355640.3:c.678T>A	p.Asn226Lys	p.N226K	ENST00000355640		226	aaT/aaA					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123200219	123200219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002338-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			682	55	657	0	ENST00000218089.9:c.2198C>T	p.Ala733Val	p.A733V	ENST00000218089	NM_001042749.1	733	gCa/gTa					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0000956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			730	108	358	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108201099	108201099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	43	262	0	ENST00000278616.4:c.7466C>T	p.Ser2489Phe	p.S2489F	ENST00000278616	NM_000051.3	2489	tCc/tTc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134920467	134920467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	79	456	0	ENST00000398015.3:c.2282C>T	p.Ser761Phe	p.S761F	ENST00000398015	NM_004441.4	761	tCc/tTc					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50455075	50455075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	143	300	0	ENST00000331340.3:c.622C>T	p.Arg208Ter	p.R208*	ENST00000331340	NM_006060.4	208	Cga/Tga					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108200963	108200963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000956-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	115	269	0	ENST00000278616.4:c.7330G>A	p.Glu2444Lys	p.E2444K	ENST00000278616	NM_000051.3	2444	Gag/Aag					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139396835	139396835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	28	364	3	ENST00000277541.6:c.5273G>A	p.Arg1758His	p.R1758H	ENST00000277541	NM_017617.3	1758	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002646-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	184	421	1	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11188584	11188584	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002646-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			801	100	496	0	ENST00000361445.4:c.5837T>C	p.Ile1946Thr	p.I1946T	ENST00000361445	NM_004958.3	1946	aTt/aCt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49440140	49440140	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002646-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	81	469	0	ENST00000301067.7:c.4486A>G	p.Thr1496Ala	p.T1496A	ENST00000301067	NM_003482.3	1496	Aca/Gca					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102874134	102874134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002646-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			893	82	558	0	ENST00000307046.8:c.26C>A	p.Thr9Asn	p.T9N	ENST00000307046	NM_001111285.1	9	aCc/aAc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32953486	32953486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002646-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	88	433	1	ENST00000380152.3:c.8787G>T	p.Leu2929Phe	p.L2929F	ENST00000380152		2929	ttG/ttT					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41514563	41514563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002646-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	83	440	0	ENST00000373198.4:c.98C>T	p.Ser33Phe	p.S33F	ENST00000373198	NM_133170.3	33	tCc/tTc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	89	241	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	87	225	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243809247	243809247	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	83	365	0	ENST00000263826.5:c.377A>T	p.Asp126Val	p.D126V	ENST00000263826	NM_005465.4	126	gAt/gTt					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20488473	20488473	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	172	287	0	ENST00000346618.3:c.1129T>G	p.Ser377Ala	p.S377A	ENST00000346618	NM_001949.4	377	Tcc/Gcc					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87570204	87570204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	19	121	0	ENST00000277120.3:c.1944C>G	p.His648Gln	p.H648Q	ENST00000277120		648	caC/caG					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9520246	9520246	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	64	209	0	ENST00000353224.5:c.2023G>T	p.Gly675Ter	p.G675*	ENST00000353224	NM_177990.2	675	Gga/Tga					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412891	63412891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	73	345	0	ENST00000330258.3:c.276G>T	p.Lys92Asn	p.K92N	ENST00000330258	NM_152424.3	92	aaG/aaT					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0001575-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	484	509	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	33	192	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578520	7578520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	37	230	0	ENST00000269305.4:c.410T>A	p.Leu137Gln	p.L137Q	ENST00000269305	NM_001126112.2	137	cTg/cAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			798	65	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			882	104	345	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			894	109	378	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162725046	162725046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	47	274	0	ENST00000367921.3:c.518C>A	p.Ser173Tyr	p.S173Y	ENST00000367921	NM_006182.2	173	tCc/tAc					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71101768	71101768	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	37	312	0	ENST00000318789.4:c.430C>G	p.Gln144Glu	p.Q144E	ENST00000318789	NM_032682.5	144	Caa/Gaa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157411	106157411	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	44	180	0	ENST00000380013.4:c.2312G>C	p.Arg771Thr	p.R771T	ENST00000380013	NM_001127208.2	771	aGa/aCa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187534443	187534443	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			658	42	236	0	ENST00000441802.2:c.9283C>G	p.Leu3095Val	p.L3095V	ENST00000441802	NM_005245.3	3095	Ctt/Gtt					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115931	8115931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			598	53	162	0	ENST00000346208.3:c.1277C>T	p.Ser426Phe	p.S426F	ENST00000346208		426	tCc/tTc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108192065	108192065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	22	225	0	ENST00000278616.4:c.6490G>C	p.Glu2164Gln	p.E2164Q	ENST00000278616	NM_000051.3	2164	Gag/Cag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49432741	49432741	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	17	115	0	ENST00000301067.7:c.8398C>T	p.Gln2800Ter	p.Q2800*	ENST00000301067	NM_003482.3	2800	Cag/Tag					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121432068	121432068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			998	108	339	0	ENST00000257555.6:c.815G>A	p.Arg272His	p.R272H	ENST00000257555		272	cGc/cAc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133209274	133209274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs181570274		P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			918	115	358	0	ENST00000320574.5:c.6112G>A	p.Glu2038Lys	p.E2038K	ENST00000320574	NM_006231.2	2038	Gag/Aag					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881440	37881440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	52	175	0	ENST00000269571.5:c.2632C>T	p.His878Tyr	p.H878Y	ENST00000269571		878	Cat/Tat					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40761067	40761067	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	60	179	0	ENST00000392038.2:c.285G>C	p.Glu95Asp	p.E95D	ENST00000392038	NM_001626.4	95	gaG/gaC					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53222640	53222640	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	40	146	0	ENST00000375401.3:c.4296G>C	p.Glu1432Asp	p.E1432D	ENST00000375401	NM_004187.3	1432	gaG/gaC					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70356777	70356777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000875-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			807	61	329	0	ENST00000374080.3:c.5449C>T	p.Pro1817Ser	p.P1817S	ENST00000374080		1817	Cct/Tct					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137519690	137519690	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000666-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	59	188	0	ENST00000367739.4:c.948A>C	p.Leu316Phe	p.L316F	ENST00000367739	NM_000416.2	316	ttA/ttC					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110250137	110250137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000666-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	17	186	0	ENST00000374672.4:c.538C>T	p.Pro180Ser	p.P180S	ENST00000374672	NM_004235.4	180	Cct/Tct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578464	7578464	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000666-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			25	57	153	0	ENST00000269305.4:c.466delC	p.Arg156AlafsTer14	p.R156Afs*14	ENST00000269305	NM_001126112.2	156	Cgc/gc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001077-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	234	297	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0001077-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	302	655	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29606652	29606652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001077-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	195	575	0	ENST00000389048.3:c.1228G>A	p.Gly410Arg	p.G410R	ENST00000389048	NM_004304.4	410	Gga/Aga					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212566790	212566790	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001077-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			681	102	586	0	ENST00000342788.4:c.1391G>C	p.Ser464Thr	p.S464T	ENST00000342788	NM_005235.2	464	aGc/aCc					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562850	21562850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001077-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	308	375	0	ENST00000382592.4:c.1069G>A	p.Val357Met	p.V357M	ENST00000382592	NM_014572.2	357	Gtg/Atg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40980892	40980892	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001077-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			628	248	388	0	ENST00000373198.4:c.1594A>C	p.Ser532Arg	p.S532R	ENST00000373198	NM_133170.3	532	Agt/Cgt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183797	10183797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003583-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			372	52	109	0	ENST00000256474.2:c.266T>A	p.Leu89His	p.L89H	ENST00000256474	NM_000551.3	89	cTc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			22	79	366	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023627	27023627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	163	247	0	ENST00000324856.7:c.733G>T	p.Ala245Ser	p.A245S	ENST00000324856	NM_006015.4	245	Gcg/Tcg					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65335061	65335061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	131	503	0	ENST00000342505.4:c.580G>T	p.Val194Phe	p.V194F	ENST00000342505	NM_002227.2	194	Gtc/Ttc					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176012855	176012855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	113	564	0	ENST00000367669.3:c.1521G>T	p.Lys507Asn	p.K507N	ENST00000367669	NM_022457.5	507	aaG/aaT					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185195144	185195144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	141	596	0	ENST00000265026.3:c.2461G>A	p.Gly821Arg	p.G821R	ENST00000265026	NM_004721.4	821	Ggg/Agg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66201650	66201650	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	84	520	0	ENST00000273854.3:c.2852G>T	p.Arg951Ile	p.R951I	ENST00000273854	NM_004439.5	951	aGa/aTa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106196330	106196330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	130	540	2	ENST00000380013.4:c.4663G>C	p.Glu1555Gln	p.E1555Q	ENST00000380013	NM_001127208.2	1555	Gag/Cag					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30673653	30673653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	193	564	0	ENST00000376406.3:c.3307C>T	p.Pro1103Ser	p.P1103S	ENST00000376406	NM_014641.2	1103	Cca/Tca					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63845612	63845612	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			21	88	395	0	ENST00000279873.7:c.1351A>T	p.Ser451Cys	p.S451C	ENST00000279873	NM_032199.2	451	Agc/Tgc					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4409114	4409114	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	128	465	0	ENST00000261254.3:c.809A>T	p.Lys270Met	p.K270M	ENST00000261254	NM_001759.3	270	aAg/aTg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916143	9916143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	55	513	0	ENST00000330684.3:c.2146G>A	p.Ala716Thr	p.A716T	ENST00000330684	NM_001134407.1	716	Gcc/Acc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2222113	2222113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			55	471	537	0	ENST00000398665.3:c.2945G>T	p.Ser982Ile	p.S982I	ENST00000398665	NM_032482.2	982	aGc/aTc					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164892	36164892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	123	287	0	ENST00000300305.3:c.983C>T	p.Thr328Ile	p.T328I	ENST00000300305		328	aCa/aTa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139396887	139396887	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			56	660	297	0	ENST00000277541.6:c.5221del	p.Ala1741ArgfsTer57	p.A1741Rfs*57	ENST00000277541	NM_017617.3	1741	Gcg/cg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433560	49433560	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002252-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	378	573	0	ENST00000301067.7:c.7993del	p.Gln2665ArgfsTer26	p.Q2665Rfs*26	ENST00000301067	NM_003482.3	2665	Cag/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	40	1335	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851747	134851747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	32	1132	0	ENST00000398015.3:c.1153G>A	p.Gly385Ser	p.G385S	ENST00000398015	NM_004441.4	385	Ggc/Agc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29676271	29676271	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0001637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	54	892	0	ENST00000358273.4:c.7321+2T>A		p.X2441_splice	ENST00000358273	NM_001042492.2	2441						NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023964	31023964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			214	22	1361	0	ENST00000375687.4:c.3449G>A	p.Gly1150Glu	p.G1150E	ENST00000375687	NM_015338.5	1150	gGa/gAa					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36012563	36012563	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	10	866	0	ENST00000358208.4:c.7A>T	p.Ser3Cys	p.S3C	ENST00000358208		3	Agc/Tgc					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591103	67591117	+	inframe_deletion	In_Frame_Del	DEL	ATTAAACCAGACCTT	ATTAAACCAGACCTT	-			P-0001637-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	44	924	0	ENST00000274335.5:c.1698_1712del	p.Lys567_Ile571del	p.K567_I571del	ENST00000274335		566	ATTAAACCAGACCTT/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			818	63	407	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55953774	55953774	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			669	56	354	1	ENST00000263923.4:c.3662G>A	p.Ser1221Asn	p.S1221N	ENST00000263923	NM_002253.2	1221	aGt/aAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002441-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	62	302	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002441-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			760	119	362	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670486	134670486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002441-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	90	401	0	ENST00000398015.3:c.397C>T	p.Pro133Ser	p.P133S	ENST00000398015	NM_004441.4	133	Ccc/Tcc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157454272	157454272	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002974-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	345	203	0	ENST00000346085.5:c.2482A>T	p.Ile828Phe	p.I828F	ENST00000346085	NM_020732.3	828	Atc/Ttc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954378	48954378	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0002195-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	501	399	0	ENST00000267163.4:c.1498+1G>C		p.X500_splice	ENST00000267163	NM_000321.2	500						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0002357-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			730	38	431	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002357-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	59	386	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952030	178952030	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002357-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			709	57	433	0	ENST00000263967.3:c.3085G>C	p.Asp1029His	p.D1029H	ENST00000263967	NM_006218.2	1029	Gat/Cat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577041	7577041	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002357-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			780	78	509	0	ENST00000269305.4:c.897del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	299	ctG/ct					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002205-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	116	202	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47702235	47702235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002205-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	117	441	0	ENST00000233146.2:c.1831G>A	p.Val611Met	p.V611M	ENST00000233146	NM_000251.2	611	Gtg/Atg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099041	27099042	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0002205-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	229	352	0	ENST00000324856.7:c.3457_3458del	p.Ser1153HisfsTer39	p.S1153Hfs*39	ENST00000324856	NM_006015.4	1153	TCc/c					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162134	47162134	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	16	254	0	ENST00000409792.3:c.3992T>C	p.Leu1331Pro	p.L1331P	ENST00000409792	NM_014159.6	1331	cTa/cCa					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98231380	98231380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	27	246	0	ENST00000331920.6:c.1903G>A	p.Asp635Asn	p.D635N	ENST00000331920	NM_000264.3	635	Gac/Aac					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187549389	187549389	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002203-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			645	49	492	0	ENST00000441802.2:c.4729del	p.Val1577LeufsTer8	p.V1577Lfs*8	ENST00000441802	NM_005245.3	1577	Gtt/tt					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	534259	534259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002603-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			474	136	337	0	ENST00000311189.7:c.64C>A	p.Gln22Lys	p.Q22K	ENST00000311189		22	Cag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002708-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			48	32	570	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002708-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	393	464	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52709255	52709255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002708-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			76	13	474	0	ENST00000322088.6:c.209C>T	p.Ala70Val	p.A70V	ENST00000322088	NM_014225.5	70	gCa/gTa					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52723503	52723503	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0002708-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	19	441	1	ENST00000322088.6:c.1363+1G>A		p.X455_splice	ENST00000322088	NM_014225.5	455						NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183825	10183825	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	52	252	0	ENST00000256474.2:c.294C>A	p.Tyr98Ter	p.Y98*	ENST00000256474	NM_000551.3	98	taC/taA					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246658	46246658	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0003721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	84	130	0	ENST00000334344.6:c.4752T>G	p.Tyr1584Ter	p.Y1584*	ENST00000334344	NM_152641.2	1584	taT/taG					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561090	9561090	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	89	260	0	ENST00000353224.5:c.692C>A	p.Ser231Ter	p.S231*	ENST00000353224	NM_177990.2	231	tCa/tAa					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52678777	52678777	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	52	234	0	ENST00000394830.3:c.842A>G	p.Tyr281Cys	p.Y281C	ENST00000394830	NM_018313.4	281	tAt/tGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578494	7578494	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	85	200	0	ENST00000269305.4:c.436T>G	p.Trp146Gly	p.W146G	ENST00000269305	NM_001126112.2	146	Tgg/Ggg					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37649052	37649052	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	489	403	1	ENST00000447079.4:c.2157G>A	p.Trp719Ter	p.W719*	ENST00000447079	NM_015083.1	719	tgG/tgA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			982	76	260	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198257106	198257106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			867	97	259	0	ENST00000335508.6:c.3836C>T	p.Ala1279Val	p.A1279V	ENST00000335508	NM_012433.2	1279	gCt/gTt					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	463397	463397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			769	61	205	0	ENST00000399788.2:c.874G>A	p.Asp292Asn	p.D292N	ENST00000399788	NM_001042603.1	292	Gat/Aat					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68842463	68842463	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	125	222	0	ENST00000261769.5:c.524T>C	p.Leu175Pro	p.L175P	ENST00000261769	NM_004360.3	175	cTg/cCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000144-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	136	329	2	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	138	521	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	178	212	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105848	27105848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	107	268	0	ENST00000324856.7:c.5459A>G	p.Asn1820Ser	p.N1820S	ENST00000324856	NM_006015.4	1820	aAt/aGt					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43805693	43805693	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			508	31	329	0	ENST00000372470.3:c.749A>T	p.Asn250Ile	p.N250I	ENST00000372470	NM_005373.2	250	aAc/aTc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120491082	120491082	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	109	240	0	ENST00000256646.2:c.2707T>G	p.Phe903Val	p.F903V	ENST00000256646	NM_024408.3	903	Ttc/Gtc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29917793	29917793	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149145987		P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	108	418	0	ENST00000389048.3:c.875G>A	p.Arg292His	p.R292H	ENST00000389048	NM_004304.4	292	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	115	330	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175780	112175780	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	82	237	0	ENST00000257430.4:c.4490del	p.Pro1497GlnfsTer10	p.P1497Qfs*10	ENST00000257430	NM_000038.5	1497	Cca/ca					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000940-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	120	400	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	80	246	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	349	341	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0002855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	93	219	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
PIK3CG	5294	MSKCC	GRCh37	7	106520027	106520027	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370034420		P-0002855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	50	383	0	ENST00000359195.3:c.2455G>A	p.Asp819Asn	p.D819N	ENST00000359195	NM_002649.2	819	Gat/Aat					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2191068	2191068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			943	58	383	0	ENST00000398665.3:c.322C>T	p.Arg108Cys	p.R108C	ENST00000398665	NM_032482.2	108	Cgc/Tgc					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128036912	128036912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	271	578	0	ENST00000285398.2:c.1567G>A	p.Val523Met	p.V523M	ENST00000285398	NM_000122.1	523	Gtg/Atg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151859879	151859879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	122	532	0	ENST00000262189.6:c.10783G>A	p.Asp3595Asn	p.D3595N	ENST00000262189	NM_170606.2	3595	Gat/Aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577511	7577525	+	inframe_deletion	In_Frame_Del	DEL	AGTGTGATGATGGTG	AGTGTGATGATGGTG	-			P-0001965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			103	212	460	0	ENST00000269305.4:c.756_770del	p.Thr253_Leu257del	p.T253_L257del	ENST00000269305	NM_001126112.2	252	ctCACCATCATCACACTg/ctg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003317-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			598	1929	296	2	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003317-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			499	217	552	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11300489	11300489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003317-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			529	76	455	0	ENST00000361445.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000361445	NM_004958.3	553	Cgc/Tgc					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	225628	225628	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003317-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			377	27	217	0	ENST00000264932.6:c.407A>T	p.Gln136Leu	p.Q136L	ENST00000264932	NM_004168.2	136	cAg/cTg					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90983495	90983495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003317-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			565	105	284	0	ENST00000265433.3:c.608C>T	p.Pro203Leu	p.P203L	ENST00000265433	NM_002485.4	203	cCa/cTa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16004673	16004673	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003317-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			591	110	603	0	ENST00000268712.3:c.2581G>C	p.Val861Leu	p.V861L	ENST00000268712	NM_006311.3	861	Gtg/Ctg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039841	47039847	+	frameshift_variant	Frame_Shift_Del	DEL	GTCGCAT	GTCGCAT	-			P-0003317-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			483	152	540	1	ENST00000329236.7:c.950_956del	p.Ser317ThrfsTer88	p.S317Tfs*88	ENST00000329236	NM_001204466.1	317	aGTCGCATc/ac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	842	423	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61145661	61145661	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			823	59	388	0	ENST00000295025.8:c.773C>T	p.Thr258Ile	p.T258I	ENST00000295025	NM_002908.2	258	aCa/aTa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157184	106157184	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	57	398	1	ENST00000380013.4:c.2085G>T	p.Met695Ile	p.M695I	ENST00000380013	NM_001127208.2	695	atG/atT					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152265398	152265398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	112	328	0	ENST00000206249.3:c.851G>A	p.Gly284Glu	p.G284E	ENST00000206249	NM_000125.3	284	gGa/gAa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88576258	88576258	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	30	217	0	ENST00000360948.2:c.1415G>T	p.Ser472Ile	p.S472I	ENST00000360948	NM_001012338.2	472	aGt/aTt					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67650770	67650770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	68	332	0	ENST00000264010.4:c.1075G>A	p.Ala359Thr	p.A359T	ENST00000264010	NM_006565.3	359	Gcc/Acc					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41234442	41234442	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	321	521	0	ENST00000357654.3:c.4336G>T	p.Glu1446Ter	p.E1446*	ENST00000357654	NM_007294.3	1446	Gaa/Taa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790172	40790172	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	16	218	0	ENST00000373198.4:c.2559C>G	p.Ser853Arg	p.S853R	ENST00000373198	NM_133170.3	853	agC/agG					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41574019	41574019	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	56	334	0	ENST00000263253.7:c.6304G>T	p.Gly2102Trp	p.G2102W	ENST00000263253	NM_001429.3	2102	Ggg/Tgg					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922955	39922955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	174	568	0	ENST00000378444.4:c.3753C>A	p.Asn1251Lys	p.N1251K	ENST00000378444	NM_001123385.1	1251	aaC/aaA					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70360586	70360586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	66	343	0	ENST00000374080.3:c.6146C>G	p.Pro2049Arg	p.P2049R	ENST00000374080		2049	cCt/cGt					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	175	507	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17371315	17371315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	167	495	0	ENST00000375499.3:c.141G>A	p.Trp47Ter	p.W47*	ENST00000375499	NM_003000.2	47	tgG/tgA					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243859016	243859016	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	126	313	0	ENST00000263826.5:c.49G>A	p.Glu17Lys	p.E17K	ENST00000263826	NM_005465.4	17	Gaa/Aaa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163373	47163373	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			717	121	454	0	ENST00000409792.3:c.2753C>G	p.Ser918Ter	p.S918*	ENST00000409792	NM_014159.6	918	tCa/tGa					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81339499	81339499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1101	183	646	0	ENST00000222390.5:c.1505G>C	p.Arg502Pro	p.R502P	ENST00000222390	NM_000601.4	502	cGa/cCa					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42796909	42796909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	107	457	0	ENST00000575354.2:c.3367G>C	p.Ala1123Pro	p.A1123P	ENST00000575354	NM_015125.3	1123	Gcc/Ccc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943591	66943591	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	2434	330	0	ENST00000374690.3:c.2671G>T	p.Asp891Tyr	p.D891Y	ENST00000374690	NM_000044.3	891	Gac/Tac					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175806	112175806	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001884-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	127	357	0	ENST00000257430.4:c.4516del	p.Leu1506Ter	p.L1506*	ENST00000257430	NM_000038.5	1505	agC/ag					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944447	40944447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	37	567	0	ENST00000373198.4:c.2055G>C	p.Lys685Asn	p.K685N	ENST00000373198	NM_133170.3	685	aaG/aaC					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16260330	16260330	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	59	299	0	ENST00000375759.3:c.7595G>A	p.Ser2532Asn	p.S2532N	ENST00000375759	NM_015001.2	2532	aGc/aAc					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248635	59248635	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	68	526	0	ENST00000371222.2:c.108G>C	p.Gln36His	p.Q36H	ENST00000371222	NM_002228.3	36	caG/caC					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143065	30143065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	128	515	0	ENST00000389048.3:c.461G>T	p.Cys154Phe	p.C154F	ENST00000389048	NM_004304.4	154	tGc/tTc					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202131498	202131498	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	62	289	0	ENST00000358485.4:c.466C>G	p.Gln156Glu	p.Q156E	ENST00000358485	NM_001080125.1	156	Caa/Gaa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259477	89259477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	49	547	0	ENST00000336596.2:c.621G>C	p.Lys207Asn	p.K207N	ENST00000336596	NM_005233.5	207	aaG/aaC					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670895	134670895	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	22	144	0	ENST00000398015.3:c.805+1G>A		p.X269_splice	ENST00000398015	NM_004441.4	269						NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430245	181430245	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	132	266	0	ENST00000325404.1:c.97A>C	p.Asn33His	p.N33H	ENST00000325404	NM_003106.3	33	Aac/Cac					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185146592	185146592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	227	393	0	ENST00000265026.3:c.223G>A	p.Asp75Asn	p.D75N	ENST00000265026	NM_004721.4	75	Gat/Aat					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55561788	55561788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	67	486	0	ENST00000288135.5:c.178G>A	p.Asp60Asn	p.D60N	ENST00000288135	NM_000222.2	60	Gat/Aat					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356170	66356170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	87	460	0	ENST00000273854.3:c.1327G>T	p.Ala443Ser	p.A443S	ENST00000273854	NM_004439.5	443	Gca/Tca					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187541097	187541097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	95	353	0	ENST00000441802.2:c.6643T>C	p.Phe2215Leu	p.F2215L	ENST00000441802	NM_005245.3	2215	Ttc/Ctc					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	233612	233612	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	68	270	0	ENST00000264932.6:c.916C>G	p.Leu306Val	p.L306V	ENST00000264932	NM_004168.2	306	Ctc/Gtc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86665681	86665681	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	69	554	0	ENST00000274376.6:c.1662C>G	p.Ile554Met	p.I554M	ENST00000274376	NM_002890.2	554	atC/atG					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55220249	55220249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	68	532	0	ENST00000275493.2:c.639C>G	p.Ile213Met	p.I213M	ENST00000275493	NM_005228.3	213	atC/atG					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81346620	81346620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	102	469	0	ENST00000222390.5:c.1333G>C	p.Asp445His	p.D445H	ENST00000222390	NM_000601.4	445	Gat/Cat					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81372711	81372711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	94	535	0	ENST00000222390.5:c.823G>C	p.Asp275His	p.D275H	ENST00000222390	NM_000601.4	275	Gac/Cac					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38275875	38275875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			54	240	342	0	ENST00000425967.3:c.1394G>A	p.Ser465Asn	p.S465N	ENST00000425967	NM_001174067.1	465	aGt/aAt					NEWRECORD																																																																									
PTPRD	5789	MSKCC	GRCh37	9	8341851	8341851	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs866497340		P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	103	592	0	ENST00000356435.5:c.4789C>T	p.Gln1597Ter	p.Q1597*	ENST00000356435		1597	Caa/Taa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518104	8518104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	39	501	0	ENST00000356435.5:c.1287G>T	p.Leu429Phe	p.L429F	ENST00000356435		429	ttG/ttT					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133747569	133747569	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	37	413	0	ENST00000318560.5:c.876G>C	p.Glu292Asp	p.E292D	ENST00000318560	NM_005157.4	292	gaG/gaC					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46233256	46233256	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	16	497	0	ENST00000334344.6:c.1475A>G	p.Gln492Arg	p.Q492R	ENST00000334344	NM_152641.2	492	cAg/cGg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133212597	133212597	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	41	354	0	ENST00000320574.5:c.5692G>T	p.Glu1898Ter	p.E1898*	ENST00000320574	NM_006231.2	1898	Gag/Tag					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28959028	28959028	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	159	575	0	ENST00000282397.4:c.2110G>C	p.Glu704Gln	p.E704Q	ENST00000282397	NM_002019.4	704	Gag/Cag					NEWRECORD																																																																									
RAD51B	0	MSKCC	GRCh37	14	68301861	68301861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	140	547	0	ENST00000487270.1:c.263C>T	p.Ser88Phe	p.S88F	ENST00000487270	NM_133509.3	88	tCt/tTt					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95562623	95562623	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	170	511	0	ENST00000343455.3:c.4634C>T	p.Ser1545Phe	p.S1545F	ENST00000343455	NM_177438.2	1545	tCt/tTt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3828091	3828091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	127	559	0	ENST00000262367.5:c.2034C>G	p.Ile678Met	p.I678M	ENST00000262367	NM_004380.2	678	atC/atG					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916254	9916254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	83	469	0	ENST00000330684.3:c.2035C>T	p.Pro679Ser	p.P679S	ENST00000330684	NM_001134407.1	679	Cct/Tct					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16004961	16004961	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	46	616	0	ENST00000268712.3:c.2293C>G	p.Pro765Ala	p.P765A	ENST00000268712	NM_006311.3	765	Ccc/Gcc					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41243906	41243906	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	52	509	0	ENST00000357654.3:c.3642G>C	p.Glu1214Asp	p.E1214D	ENST00000357654	NM_007294.3	1214	gaG/gaC					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602369	10602369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	241	495	0	ENST00000171111.5:c.1209G>T	p.Trp403Cys	p.W403C	ENST00000171111	NM_203500.1	403	tgG/tgT					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42796475	42796475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	217	396	0	ENST00000575354.2:c.3032G>C	p.Gly1011Ala	p.G1011A	ENST00000575354	NM_015125.3	1011	gGc/gCc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41076862	41076862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	27	508	1	ENST00000373198.4:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000373198	NM_133170.3	520	Gag/Aag					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57485763	57485763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	147	384	0	ENST00000371085.3:c.1064G>T	p.Gly355Val	p.G355V	ENST00000371085	NM_000516.4	355	gGg/gTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	102	209	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0003764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			25	261	215	0	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45855999	45856016	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCACCTTGAGAATGCGG	CTCACCTTGAGAATGCGG	-			P-0003764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	82	339	0	ENST00000391945.4:c.1890_1902+5del		p.X630_splice	ENST00000391945	NM_000400.3	630						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000180-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			312	96	153	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187447714	187447714	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138532510		P-0000180-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			357	52	122	0	ENST00000232014.4:c.479G>A	p.Arg160His	p.R160H	ENST00000232014	NM_001130845.1	160	cGt/cAt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68844181	68844181	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000180-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			446	98	175	0	ENST00000261769.5:c.769G>T	p.Asp257Tyr	p.D257Y	ENST00000261769	NM_004360.3	257	Gac/Tac					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37863308	37863308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000180-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			752	42	275	0	ENST00000269571.5:c.139C>T	p.Arg47Cys	p.R47C	ENST00000269571		47	Cgc/Tgc					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48025924	48025924	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	213	442	0	ENST00000234420.5:c.802G>C	p.Asp268His	p.D268H	ENST00000234420	NM_000179.2	268	Gac/Cac					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47161957	47161957	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	580	428	0	ENST00000409792.3:c.4169C>G	p.Ser1390Ter	p.S1390*	ENST00000409792	NM_014159.6	1390	tCa/tGa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162683	47162683	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141227139		P-0002295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	629	451	2	ENST00000409792.3:c.3443C>T	p.Ser1148Phe	p.S1148F	ENST00000409792	NM_014159.6	1148	tCc/tTc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163476	47163476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	422	374	0	ENST00000409792.3:c.2650C>T	p.Gln884Ter	p.Q884*	ENST00000409792	NM_014159.6	884	Cag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	333	527	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120496232	120496232	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	248	594	0	ENST00000256646.2:c.2299C>T	p.Gln767Ter	p.Q767*	ENST00000256646	NM_024408.3	767	Cag/Tag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	132	344	0	ENST00000278616.4:c.8631G>T	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttT					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938823	76938823	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	82	576	0	ENST00000373344.5:c.1925A>C	p.Asn642Thr	p.N642T	ENST00000373344	NM_000489.3	642	aAt/aCt					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193094296	193094297	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	341	467	0	ENST00000367435.3:c.187_188del	p.Leu63ThrfsTer2	p.L63Tfs*2	ENST00000367435	NM_024529.4	62	ttTCta/ttta					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128851531	128851531	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	251	533	0	ENST00000249373.3:c.1858del	p.Gln620SerfsTer156	p.Q620Sfs*156	ENST00000249373	NM_005631.4	619	gCc/gc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220599	1220612	+	frameshift_variant	Frame_Shift_Del	DEL	CGGACGACACCTGC	CGGACGACACCTGC	-			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	214	450	0	ENST00000326873.7:c.622_635del	p.Asp208GlnfsTer53	p.D208Qfs*53	ENST00000326873	NM_000455.4	206	gCGGACGACACCTGC/g					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108143466	108143466	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	203	502	0	ENST00000278616.4:c.3171A>T	p.Lys1057Asn	p.K1057N	ENST00000278616	NM_000051.3	1057	aaA/aaT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	140	334	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	58	430	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	120	195	0	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156843578	156843578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	165	569	1	ENST00000524377.1:c.1004C>T	p.Pro335Leu	p.P335L	ENST00000524377	NM_002529.3	335	cCg/cTg					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591251	67591251	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	87	244	2	ENST00000274335.5:c.1749G>A	p.Trp583Ter	p.W583*	ENST00000274335		583	tgG/tgA					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15961884	15961884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	150	379	0	ENST00000268712.3:c.5911G>A	p.Asp1971Asn	p.D1971N	ENST00000268712	NM_006311.3	1971	Gat/Aat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	100	378	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	61	175	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	148	408	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5208010	5208010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	104	415	1	ENST00000357368.4:c.5701C>T	p.Arg1901Trp	p.R1901W	ENST00000357368	NM_002850.3	1901	Cgg/Tgg					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153244138	153244138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	145	398	0	ENST00000281708.4:c.2019G>A	p.Trp673Ter	p.W673*	ENST00000281708	NM_033632.3	673	tgG/tgA					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153244290	153244290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	88	254	0	ENST00000281708.4:c.1867C>T	p.His623Tyr	p.H623Y	ENST00000281708	NM_033632.3	623	Cat/Tat					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473635	67473635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	141	352	0	ENST00000327367.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000327367	NM_005902.3	239	Gag/Aag					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473647	67473647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	32	346	0	ENST00000327367.4:c.727C>T	p.Arg243Cys	p.R243C	ENST00000327367	NM_005902.3	243	Cgc/Tgc					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45374935	45374935	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	192	360	1	ENST00000262160.6:c.908C>G	p.Thr303Arg	p.T303R	ENST00000262160	NM_005901.5	303	aCa/aGa					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411936	63411936	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	144	572	0	ENST00000330258.3:c.1231G>T	p.Glu411Ter	p.E411*	ENST00000330258	NM_152424.3	411	Gaa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112170816	112170816	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	113	385	0	ENST00000257430.4:c.1912del	p.Ile638TyrfsTer8	p.I638Yfs*8	ENST00000257430	NM_000038.5	638	Ata/ta					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67358693	67358693	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	31	259	1	ENST00000327367.4:c.204del	p.Arg69GlyfsTer47	p.R69Gfs*47	ENST00000327367	NM_005902.3	67	atC/at					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	208	270	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120480579	120480579	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	156	388	0	ENST00000256646.2:c.3238C>T	p.Gln1080Ter	p.Q1080*	ENST00000256646	NM_024408.3	1080	Cag/Tag					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50450265	50450265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	116	376	0	ENST00000331340.3:c.449G>A	p.Cys150Tyr	p.C150Y	ENST00000331340	NM_006060.4	150	tGc/tAc					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98248153	98248153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	124	245	0	ENST00000331920.6:c.398G>A	p.Gly133Glu	p.G133E	ENST00000331920	NM_000264.3	133	gGa/gAa					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645412	67645412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	139	277	0	ENST00000264010.4:c.677A>G	p.Tyr226Cys	p.Y226C	ENST00000264010	NM_006565.3	226	tAc/tGc					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12016550	12016550	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	155	354	0	ENST00000353533.5:c.686A>T	p.Asp229Val	p.D229V	ENST00000353533	NM_003010.3	229	gAt/gTt					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119113	70119113	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	76	152	0	ENST00000245479.2:c.685G>A	p.Gly229Arg	p.G229R	ENST00000245479	NM_000346.3	229	Ggg/Agg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546556	9546556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	135	339	0	ENST00000353224.5:c.1466A>G	p.Glu489Gly	p.E489G	ENST00000353224	NM_177990.2	489	gAa/gGa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112120	115112123	+	frameshift_variant	Frame_Shift_Del	DEL	ACCC	ACCC	-			P-0003784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	206	408	0	ENST00000257566.3:c.1617_1620del	p.Met539IlefsTer92	p.M539Ifs*92	ENST00000257566	NM_016569.3	539	atGGGT/at					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002162-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	110	195	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1278901	1278901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002162-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			777	77	263	3	ENST00000310581.5:c.2141C>T	p.Thr714Met	p.T714M	ENST00000310581	NM_198253.2	714	aCg/aTg					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61149029	61149029	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002162-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1114	296	469	0	ENST00000295025.8:c.1219C>A	p.Leu407Met	p.L407M	ENST00000295025	NM_002908.2	407	Ctg/Atg					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61149662	61149662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002162-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	65	118	0	ENST00000295025.8:c.1852C>G	p.Gln618Glu	p.Q618E	ENST00000295025	NM_002908.2	618	Caa/Gaa					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30670548	30670548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002162-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	532	448	1	ENST00000376406.3:c.5972G>A	p.Arg1991Gln	p.R1991Q	ENST00000376406	NM_014641.2	1991	cGg/cAg					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729202	66729202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002162-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1132	194	304	1	ENST00000307102.5:c.410G>T	p.Gly137Val	p.G137V	ENST00000307102	NM_002755.3	137	gGc/gTc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1219413	1219413	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0002162-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	266	261	0	ENST00000326873.7:c.464+1G>C		p.X155_splice	ENST00000326873	NM_000455.4	155						NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39742762	39742762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002162-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			708	477	429	0	ENST00000361337.2:c.1605C>G	p.Ile535Met	p.I535M	ENST00000361337	NM_003286.2	535	atC/atG					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40710579	40710579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002162-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			730	164	341	0	ENST00000373198.4:c.4272C>A	p.Asp1424Glu	p.D1424E	ENST00000373198	NM_133170.3	1424	gaC/gaA					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202141586	202141586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			712	182	316	0	ENST00000358485.4:c.874C>T	p.Arg292Trp	p.R292W	ENST00000358485	NM_001080125.1	292	Cgg/Tgg					NEWRECORD																																																																									
MYD88	0	MSKCC	GRCh37	3	38182734	38182734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	180	347	0	ENST00000396334.3:c.887C>G	p.Ser296Cys	p.S296C	ENST00000396334	NM_002468.4	296	tCt/tGt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952117	178952117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	271	201	0	ENST00000263967.3:c.3172A>C	p.Ile1058Leu	p.I1058L	ENST00000263967	NM_006218.2	1058	Atc/Ctc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108205814	108205814	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	137	219	0	ENST00000278616.4:c.8129A>G	p.Lys2710Arg	p.K2710R	ENST00000278616	NM_000051.3	2710	aAg/aGg					NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0000105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	156	361	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577516	7577517	+	missense_variant	Missense_Mutation	DNP	GA	GA	AG			P-0000105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	135	240	0	ENST00000269305.4:c.764_765delTCinsCT	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTC/aCT					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0004637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	38	231	0	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	171	166	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	133	287	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	284	697	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	64	208	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66231728	66231728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	75	313	0	ENST00000273854.3:c.1972G>A	p.Asp658Asn	p.D658N	ENST00000273854	NM_004439.5	658	Gat/Aat					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245399	153245399	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	206	329	0	ENST00000281708.4:c.1792A>C	p.Asn598His	p.N598H	ENST00000281708	NM_033632.3	598	Aat/Cat					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86686657	86686657	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	91	391	0	ENST00000274376.6:c.3101A>C	p.Gln1034Pro	p.Q1034P	ENST00000274376	NM_002890.2	1034	cAa/cCa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2962834	2962834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	53	119	0	ENST00000396946.4:c.2074G>A	p.Val692Met	p.V692M	ENST00000396946	NM_032415.4	692	Gtg/Atg					NEWRECORD																																																																									
CDKN2B	0	MSKCC	GRCh37	9	22008835	22008835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	108	262	1	ENST00000276925.6:c.118C>T	p.Pro40Ser	p.P40S	ENST00000276925	NM_004936.3	40	Ccc/Tcc					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42852434	42852434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	102	221	0	ENST00000398585.3:c.652G>A	p.Gly218Arg	p.G218R	ENST00000398585	NM_001135099.1	218	Ggg/Agg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	138	208	0	ENST00000257430.4:c.3964del	p.Glu1322LysfsTer93	p.E1322Kfs*93	ENST00000257430	NM_000038.5	1322	Gaa/aa					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120210	70120228	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCACTACAGCGAGCAG	CAGCCACTACAGCGAGCAG	-			P-0003720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	108	201	1	ENST00000245479.2:c.1216_1234del	p.His406SerfsTer58	p.H406Sfs*58	ENST00000245479	NM_000346.3	404	ccCAGCCACTACAGCGAGCAG/cc					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204518427	204518427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			792	49	370	0	ENST00000367182.3:c.1090A>G	p.Arg364Gly	p.R364G	ENST00000367182	NM_001278516.1	364	Aga/Gga					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25966607	25966607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	52	277	0	ENST00000435504.4:c.2599A>G	p.Asn867Asp	p.N867D	ENST00000435504		867	Aac/Gac					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71161773	71161773	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	61	354	0	ENST00000318789.4:c.196A>G	p.Arg66Gly	p.R66G	ENST00000318789	NM_032682.5	66	Aga/Gga					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143094876	143094876	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	62	316	0	ENST00000262992.4:c.1268T>G	p.Leu423Arg	p.L423R	ENST00000262992	NM_001101669.1	423	cTt/cGt					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339261	116339261	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0000485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			742	44	456	0	ENST00000397752.3:c.123T>G	p.Tyr41Ter	p.Y41*	ENST00000397752	NM_000245.2	41	taT/taG					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139393656	139393656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	22	193	0	ENST00000277541.6:c.5990C>T	p.Thr1997Met	p.T1997M	ENST00000277541	NM_017617.3	1997	aCg/aTg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2105444	2105444	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	73	376	0	ENST00000219476.3:c.523G>C	p.Glu175Gln	p.E175Q	ENST00000219476	NM_000548.3	175	Gaa/Caa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	100	199	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78617549	78617549	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	67	241	3	ENST00000306801.3:c.287A>G	p.Gln96Arg	p.Q96R	ENST00000306801	NM_020761.2	96	cAg/cGg					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42795286	42795286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	55	296	0	ENST00000575354.2:c.2366G>A	p.Gly789Glu	p.G789E	ENST00000575354	NM_015125.3	789	gGg/gAg					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45854954	45854954	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	27	306	0	ENST00000391945.4:c.2216T>A	p.Leu739His	p.L739H	ENST00000391945	NM_000400.3	739	cTc/cAc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921606	39921606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	74	241	0	ENST00000378444.4:c.4214C>T	p.Ser1405Leu	p.S1405L	ENST00000378444	NM_001123385.1	1405	tCg/tTg					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176175783	176175784	+	missense_variant	Missense_Mutation	DNP	CT	CT	AC			P-0000485-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	53	372	0	ENST00000367669.3:c.331_332delAGinsGT	p.Arg111Val	p.R111V	ENST00000367669	NM_022457.5	111	AGg/GTg					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876382	35876382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	15	267	0	ENST00000303115.3:c.1174G>A	p.Glu392Lys	p.E392K	ENST00000303115	NM_002185.3	392	Gag/Aag					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39755594	39755594	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	16	304	0	ENST00000288319.7:c.1171G>C	p.Asp391His	p.D391H	ENST00000288319	NM_182918.3	391	Gac/Cac					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8075609	8075609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	20	445	0	ENST00000377482.5:c.71G>A	p.Arg24Gln	p.R24Q	ENST00000377482	NM_018948.3	24	cGa/cAa					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71090533	71090533	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	13	288	0	ENST00000318789.4:c.815A>T	p.Asn272Ile	p.N272I	ENST00000318789	NM_032682.5	272	aAc/aTc					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38272131	38272131	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	17	298	0	ENST00000425967.3:c.2087A>G	p.Lys696Arg	p.K696R	ENST00000425967	NM_001174067.1	696	aAg/aGg					NEWRECORD																																																																									
NFKBIA	0	MSKCC	GRCh37	14	35871252	35871252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	127	455	2	ENST00000216797.5:c.921C>G	p.Asp307Glu	p.D307E	ENST00000216797	NM_020529.2	307	gaC/gaG					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118378305	118378306	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0003798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	23	257	0	ENST00000534358.1:c.10816_10817delinsTT	p.Glu3606Leu	p.E3606L	ENST00000534358	NM_005933.3	3606	GAg/TTg					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	208	350	3	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	152	309	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
HIST1H3G	0	MSKCC	GRCh37	6	26271321	26271321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	298	955	0	ENST00000305910.3:c.292G>A	p.Glu98Lys	p.E98K	ENST00000305910	NM_003534.2	98	Gag/Aag					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156849852	156849852	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	108	427	0	ENST00000524377.1:c.2108A>C	p.Lys703Thr	p.K703T	ENST00000524377	NM_002529.3	703	aAg/aCg					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99169377	99169377	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	175	330	0	ENST00000074304.5:c.1307C>G	p.Ala436Gly	p.A436G	ENST00000074304	NM_001134224.1	436	gCc/gGc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165333	47165333	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	183	435	0	ENST00000409792.3:c.793G>T	p.Glu265Ter	p.E265*	ENST00000409792	NM_014159.6	265	Gaa/Taa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89448483	89448483	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	155	393	0	ENST00000336596.2:c.1447A>C	p.Ser483Arg	p.S483R	ENST00000336596	NM_005233.5	483	Agt/Cgt					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189349368	189349368	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	387	357	0	ENST00000264731.3:c.62+2T>G		p.X21_splice	ENST00000264731	NM_003722.4	21						NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6042175	6042175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	190	398	0	ENST00000265849.7:c.446A>G	p.Tyr149Cys	p.Y149C	ENST00000265849	NM_000535.5	149	tAc/tGc					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135779804	135779804	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	96	363	0	ENST00000298552.3:c.2035T>G	p.Phe679Val	p.F679V	ENST00000298552	NM_001162426.1	679	Ttt/Gtt					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405480	70405480	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	251	498	0	ENST00000373644.4:c.2994A>C	p.Lys998Asn	p.K998N	ENST00000373644	NM_030625.2	998	aaA/aaC					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70446194	70446194	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	94	444	0	ENST00000373644.4:c.5134A>T	p.Lys1712Ter	p.K1712*	ENST00000373644	NM_030625.2	1712	Aag/Tag					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41246701	41246701	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	220	468	0	ENST00000357654.3:c.847T>G	p.Leu283Val	p.L283V	ENST00000357654	NM_007294.3	283	Tta/Gta					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142269114	142269114	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000387-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			275	354	299	1	ENST00000350721.4:c.2836A>G	p.Met946Val	p.M946V	ENST00000350721	NM_001184.3	946	Atg/Gtg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118345015	118345015	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000387-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			218	238	212	0	ENST00000534358.1:c.3141C>G	p.Asp1047Glu	p.D1047E	ENST00000534358	NM_005933.3	1047	gaC/gaG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000387-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			22	337	284	1	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10246911	10246911	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000387-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			498	397	360	0	ENST00000340748.4:c.4494G>A	p.Trp1498Ter	p.W1498*	ENST00000340748		1498	tgG/tgA					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48936979	48936992	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTCGAACACCCA	ACCTCGAACACCCA	-			P-0000387-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			36	214	402	0	ENST00000267163.4:c.747_760delACCTCGAACACCCA	p.Pro250AlafsTer16	p.P250Afs*16	ENST00000267163	NM_000321.2	249	tcACCTCGAACACCCAgg/tcgg					NEWRECORD																																																																									
PIM1	0	MSKCC	GRCh37	6	37140879	37140879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001992-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	211	306	0	ENST00000373509.5:c.715G>C	p.Asp239His	p.D239H	ENST00000373509	NM_002648.3	239	Gat/Cat					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001992-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	167	283	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	21	324	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	151	363	0	ENST00000269305.4:c.817C>G	p.Arg273Gly	p.R273G	ENST00000269305	NM_001126112.2	273	Cgt/Ggt					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72076755	72076755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	60	433	0	ENST00000357731.5:c.742G>T	p.Ala248Ser	p.A248S	ENST00000357731	NM_173808.2	248	Gca/Tca					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16086130	16086130	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	97	239	0	ENST00000281043.3:c.1306G>T	p.Glu436Ter	p.E436*	ENST00000281043	NM_005378.4	436	Gag/Tag					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99154325	99154325	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	38	207	0	ENST00000074304.5:c.468-1G>A		p.X156_splice	ENST00000074304	NM_001134224.1	156						NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212568839	212568839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	36	344	0	ENST00000342788.4:c.1279G>C	p.Val427Leu	p.V427L	ENST00000342788	NM_005235.2	427	Gta/Cta					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225370713	225370713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	42	300	0	ENST00000264414.4:c.1166C>A	p.Ser389Ter	p.S389*	ENST00000264414	NM_003590.4	389	tCa/tAa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47161891	47161891	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	136	418	0	ENST00000409792.3:c.4235A>T	p.Glu1412Val	p.E1412V	ENST00000409792	NM_014159.6	1412	gAg/gTg					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35861055	35861055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	94	254	0	ENST00000303115.3:c.184C>A	p.Pro62Thr	p.P62T	ENST00000303115	NM_002185.3	62	Cca/Aca					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56111450	56111450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	26	106	0	ENST00000399503.3:c.50C>T	p.Ala17Val	p.A17V	ENST00000399503	NM_005921.1	17	gCc/gTc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154810	112154810	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	112	305	0	ENST00000257430.4:c.1081C>A	p.His361Asn	p.H361N	ENST00000257430	NM_000038.5	361	Cat/Aat					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13971286	13971286	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	146	279	0	ENST00000405192.2:c.643A>G	p.Met215Val	p.M215V	ENST00000405192	NM_001163147.1	215	Atg/Gtg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55221802	55221802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	309	398	0	ENST00000275493.2:c.846G>T	p.Glu282Asp	p.E282D	ENST00000275493	NM_005228.3	282	gaG/gaT					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8499831	8499831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	40	243	0	ENST00000356435.5:c.2138G>T	p.Gly713Val	p.G713V	ENST00000356435		713	gGt/gTt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21970966	21970966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	64	212	0	ENST00000304494.5:c.392G>C	p.Arg131Pro	p.R131P	ENST00000304494	NM_000077.4	131	cGc/cCc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970966	21970966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	64	212	0	ENST00000304494.5:c.392G>C	p.Arg131Pro	p.R131P	ENST00000304494	NM_000077.4	131	cGc/cCc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971195	21971195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	17	78	0	ENST00000304494.5:c.163G>T	p.Gly55Cys	p.G55C	ENST00000304494	NM_000077.4	55	Ggc/Tgc					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971195	21971195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	17	78	0	ENST00000304494.5:c.163G>T	p.Gly55Cys	p.G55C	ENST00000304494	NM_000077.4	55	Ggc/Tgc					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77043870	77043870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	111	425	0	ENST00000356341.3:c.1456A>G	p.Asn486Asp	p.N486D	ENST00000356341	NM_002576.4	486	Aac/Gac					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999042	100999042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	114	289	0	ENST00000325455.5:c.760G>T	p.Ala254Ser	p.A254S	ENST00000325455	NM_001202474.3	254	Gcg/Tcg					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102076656	102076656	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	56	187	0	ENST00000282441.5:c.835G>C	p.Val279Leu	p.V279L	ENST00000282441	NM_001130145.2	279	Gtg/Ctg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431772	49431772	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	104	213	0	ENST00000301067.7:c.9367G>T	p.Glu3123Ter	p.E3123*	ENST00000301067	NM_003482.3	3123	Gag/Tag					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56486597	56486597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	99	317	0	ENST00000267101.3:c.1176G>T	p.Glu392Asp	p.E392D	ENST00000267101	NM_001982.3	392	gaG/gaT					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57861789	57861789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	153	470	0	ENST00000228682.2:c.1090T>C	p.Cys364Arg	p.C364R	ENST00000228682	NM_005269.2	364	Tgt/Cgt					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57864714	57864714	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	154	442	0	ENST00000228682.2:c.2191G>T	p.Gly731Ter	p.G731*	ENST00000228682	NM_005269.2	731	Gga/Tga					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48947611	48947611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	28	225	0	ENST00000267163.4:c.1198C>G	p.Leu400Val	p.L400V	ENST00000267163	NM_000321.2	400	Ctg/Gtg					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103514842	103514842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	49	198	0	ENST00000355739.4:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000355739	NM_000123.3	448	tCa/tTa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68867335	68867335	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	185	310	0	ENST00000261769.5:c.2582A>G	p.Tyr861Cys	p.Y861C	ENST00000261769	NM_004360.3	861	tAc/tGc					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89815072	89815072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	238	336	1	ENST00000389301.3:c.3343G>A	p.Glu1115Lys	p.E1115K	ENST00000389301	NM_000135.2	1115	Gag/Aag					NEWRECORD																																																																									
H3F3B	0	MSKCC	GRCh37	17	73774795	73774795	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	76	301	0	ENST00000254810.4:c.292G>T	p.Glu98Ter	p.E98*	ENST00000254810	NM_005324.3	98	Gaa/Taa					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39623751	39623751	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	45	375	0	ENST00000262039.4:c.2158G>T	p.Glu720Ter	p.E720*	ENST00000262039	NM_002647.2	720	Gag/Tag					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39932044	39932044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	61	174	0	ENST00000378444.4:c.2555T>C	p.Phe852Ser	p.F852S	ENST00000378444	NM_001123385.1	852	tTc/tCc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39934026	39934026	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	62	212	0	ENST00000378444.4:c.573G>C	p.Trp191Cys	p.W191C	ENST00000378444	NM_001123385.1	191	tgG/tgC					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53230856	53230856	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	116	199	0	ENST00000375401.3:c.1937A>T	p.Glu646Val	p.E646V	ENST00000375401	NM_004187.3	646	gAg/gTg					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410401	63410401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	130	189	0	ENST00000330258.3:c.2766G>T	p.Gln922His	p.Q922H	ENST00000330258	NM_152424.3	922	caG/caT					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123184047	123184047	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	43	162	0	ENST00000218089.9:c.905C>T	p.Ala302Val	p.A302V	ENST00000218089	NM_001042749.1	302	gCt/gTt					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870798	12870798	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	51	86	0	ENST00000228872.4:c.27del	p.Ser10AlafsTer32	p.S10Afs*32	ENST00000228872	NM_004064.3	9	Ggg/gg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88476295	88476295	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	79	329	0	ENST00000360948.2:c.1837delC	p.Leu613SerfsTer8	p.L613Sfs*8	ENST00000360948	NM_001012338.2	613	Ctc/tc					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121434455	121434455	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003451-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	163	521	0	ENST00000257555.6:c.1219T>A	p.Ser407Thr	p.S407T	ENST00000257555		407	Tca/Aca					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001889-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			798	632	403	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001889-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	303	319	1	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115871	8115872	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0001889-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			751	488	359	0	ENST00000346208.3:c.1219_1220delTC	p.Ser407AlafsTer99	p.S407Afs*99	ENST00000346208		406	aTC/a					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002285-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			37	133	609	0	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16245454	16245454	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002285-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	42	531	0	ENST00000375759.3:c.1429C>T	p.Gln477Ter	p.Q477*	ENST00000375759	NM_015001.2	477	Cag/Tag					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95566118	95566118	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0002285-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	57	279	0	ENST00000343455.3:c.4205T>A	p.Met1402Lys	p.M1402K	ENST00000343455	NM_177438.2	1402	aTg/aAg					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95579529	95579529	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002285-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	44	379	0	ENST00000343455.3:c.1940C>G	p.Thr647Ser	p.T647S	ENST00000343455	NM_177438.2	647	aCt/aGt					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47428164	47428164	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145056294		P-0002285-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	35	674	0	ENST00000377045.4:c.1124G>A	p.Arg375Gln	p.R375Q	ENST00000377045	NM_001654.4	375	cGg/cAg					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98270594	98270594	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002285-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			18	11	39	0	ENST00000331920.6:c.50del	p.Gly17AlafsTer63	p.G17Afs*63	ENST00000331920	NM_000264.3	17	gGc/gc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0003502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	133	238	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	61	162	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25972563	25972563	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0003502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	36	201	0	ENST00000435504.4:c.1860+2T>C		p.X620_splice	ENST00000435504		620						NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185161270	185161270	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	29	299	0	ENST00000265026.3:c.697A>G	p.Met233Val	p.M233V	ENST00000265026	NM_004721.4	233	Atg/Gtg					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41762416	41762416	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	40	309	0	ENST00000301178.4:c.2096A>G	p.Asn699Ser	p.N699S	ENST00000301178	NM_021913.4	699	aAt/aGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0004564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	267	342	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176050354	176050354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	75	335	0	ENST00000367669.3:c.1211C>T	p.Ser404Leu	p.S404L	ENST00000367669	NM_022457.5	404	tCa/tTa					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42005677	42005677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	157	218	0	ENST00000219905.7:c.3413G>A	p.Arg1138Lys	p.R1138K	ENST00000219905	NM_001164273.1	1138	aGa/aAa					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12871001	12871001	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1211	482	263	0	ENST00000228872.4:c.228G>A	p.Trp76Ter	p.W76*	ENST00000228872	NM_004064.3	76	tgG/tgA					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4090691	4090693	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0002627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1168	156	323	0	ENST00000262948.5:c.1106_1108del	p.Ile369del	p.I369del	ENST00000262948	NM_030662.3	369	aTCAag/aag					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153252021	153252021	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0003171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	150	313	0	ENST00000281708.4:c.986-1G>C		p.X329_splice	ENST00000281708	NM_033632.3	329						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	209	261	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225422497	225422497	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	670	385	0	ENST00000264414.4:c.143A>G	p.Asn48Ser	p.N48S	ENST00000264414	NM_003590.4	48	aAt/aGt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713826	30713826	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	240	254	0	ENST00000359013.4:c.1226A>C	p.Asn409Thr	p.N409T	ENST00000359013	NM_001024847.2	409	aAt/aCt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628022	187628022	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	336	413	0	ENST00000441802.2:c.2960A>T	p.Gln987Leu	p.Q987L	ENST00000441802	NM_005245.3	987	cAg/cTg					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876230	35876230	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	493	308	1	ENST00000303115.3:c.1022G>T	p.Gly341Val	p.G341V	ENST00000303115	NM_002185.3	341	gGa/gTa					NEWRECORD																																																																									
PNRC1	0	MSKCC	GRCh37	6	89793902	89793902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	129	178	0	ENST00000336032.3:c.971A>G	p.Lys324Arg	p.K324R	ENST00000336032	NM_006813.2	324	aAa/aGa					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	237	293	1	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	237	293	1	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139396454	139396454	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	337	347	0	ENST00000277541.6:c.5471G>T	p.Arg1824Leu	p.R1824L	ENST00000277541	NM_017617.3	1824	cGg/cTg					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88672140	88672140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	256	308	0	ENST00000372037.3:c.674T>G	p.Leu225Trp	p.L225W	ENST00000372037	NM_004329.2	225	tTg/tGg					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104309744	104309744	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	336	417	0	ENST00000369902.3:c.335G>A	p.Gly112Glu	p.G112E	ENST00000369902	NM_016169.3	112	gGa/gAa					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999053	100999053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	292	470	0	ENST00000325455.5:c.749G>T	p.Gly250Val	p.G250V	ENST00000325455	NM_001202474.3	250	gGa/gTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	252	300	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37650809	37650809	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	337	394	0	ENST00000447079.4:c.2281G>A	p.Asp761Asn	p.D761N	ENST00000447079	NM_015083.1	761	Gac/Aac					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45372109	45372109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	380	387	0	ENST00000262160.6:c.1060G>C	p.Ala354Pro	p.A354P	ENST00000262160	NM_005901.5	354	Gca/Cca					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023569	27023570	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0004517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	309	333	0	ENST00000324856.7:c.675_676delinsT	p.Ala226ProfsTer6	p.A226Pfs*6	ENST00000324856	NM_006015.4	225	ccCGcc/ccTcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	467	535	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67358586	67358587	+	missense_variant	Missense_Mutation	DNP	GA	GA	CG			P-0004133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	99	467	0	ENST00000327367.4:c.94_95delinsCG	p.Glu32Arg	p.E32R	ENST00000327367	NM_005902.3	32	GAg/CGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	82	264	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	18	278	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187521174	187521174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	14	308	0	ENST00000441802.2:c.11981G>C	p.Arg3994Thr	p.R3994T	ENST00000441802	NM_005245.3	3994	aGa/aCa					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180038384	180038384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	73	260	0	ENST00000261937.6:c.3633G>T	p.Gln1211His	p.Q1211H	ENST00000261937	NM_182925.4	1211	caG/caT					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720726	89720726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs878853944		P-0001945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	15	52	0	ENST00000371953.3:c.877G>T	p.Gly293Ter	p.G293*	ENST00000371953	NM_000314.4	293	Gga/Tga					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89725042	89725042	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0001945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	116	234	0	ENST00000371953.3:c.1027-2A>T		p.X343_splice	ENST00000371953	NM_000314.4	343						NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66774131	66774131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	152	303	0	ENST00000307102.5:c.607G>A	p.Glu203Lys	p.E203K	ENST00000307102	NM_002755.3	203	Gag/Aag					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16029499	16029499	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	14	262	0	ENST00000268712.3:c.1531G>C	p.Glu511Gln	p.E511Q	ENST00000268712	NM_006311.3	511	Gaa/Caa					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53228040	53228040	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	106	300	0	ENST00000375401.3:c.2274del	p.Met759CysfsTer5	p.M759Cfs*5	ENST00000375401	NM_004187.3	758	gcC/gc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2979562	2979562	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0002260-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			940	84	530	0	ENST00000396946.4:c.685A>T	p.Ile229Phe	p.I229F	ENST00000396946	NM_032415.4	229	Atc/Ttc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	44	106	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1803171	1803171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	44	283	0	ENST00000260795.2:c.523C>T	p.Arg175Cys	p.R175C	ENST00000260795		175	Cgc/Tgc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425601	49425601	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	22	279	0	ENST00000301067.7:c.12887T>A	p.Leu4296Ter	p.L4296*	ENST00000301067	NM_003482.3	4296	tTa/tAa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060989	38060990	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0004466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	18	120	0	ENST00000250448.2:c.999_1000del	p.Gln333HisfsTer81	p.Q333Hfs*81	ENST00000250448	NM_004496.3	333	caGAct/cact					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420130	49420130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	247	387	4	ENST00000301067.7:c.15619C>A	p.Pro5207Thr	p.P5207T	ENST00000301067	NM_003482.3	5207	Ccc/Acc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435370	110435370	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	72	114	0	ENST00000375856.3:c.3031T>G	p.Ser1011Ala	p.S1011A	ENST00000375856	NM_003749.2	1011	Tcc/Gcc					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	339439	339439	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	29	523	0	ENST00000262320.3:c.2462+1G>T		p.X821_splice	ENST00000262320	NM_003502.3	821						NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102100551	102100571	+	inframe_deletion	In_Frame_Del	DEL	AGAAGGAGAGGAGCTGATGCC	AGAAGGAGAGGAGCTGATGCC	-			P-0003737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	274	421	0	ENST00000282441.5:c.1396_1416del	p.Glu466_Pro472del	p.E466_P472del	ENST00000282441	NM_001130145.2	465	atAGAAGGAGAGGAGCTGATGCCa/ata					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27097737	27097737	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	295	495	0	ENST00000324856.7:c.3329del	p.Gly1110GlufsTer51	p.G1110Efs*51	ENST00000324856	NM_006015.4	1109	cGg/cg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	170	303	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16042434	16042434	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	197	462	1	ENST00000268712.3:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000268712	NM_006311.3	414	Cga/Tga					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245393	153245393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	189	408	0	ENST00000281708.4:c.1798G>A	p.Asp600Asn	p.D600N	ENST00000281708	NM_033632.3	600	Gat/Aat					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43615035	43615035	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142318626		P-0002442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	105	458	0	ENST00000355710.3:c.2449C>T	p.Arg817Cys	p.R817C	ENST00000355710	NM_020975.4	817	Cgc/Tgc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175186	112175187	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0002442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	197	222	0	ENST00000257430.4:c.3895_3896delinsT	p.Ala1299LeufsTer6	p.A1299Lfs*6	ENST00000257430	NM_000038.5	1299	GCt/Tt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	73	189	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16257434	16257434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	23	401	0	ENST00000375759.3:c.4699G>A	p.Glu1567Lys	p.E1567K	ENST00000375759	NM_015001.2	1567	Gag/Aag					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178096481	178096481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	37	313	0	ENST00000397062.3:c.850G>A	p.Glu284Lys	p.E284K	ENST00000397062	NM_006164.4	284	Gaa/Aaa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117609825	117609825	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	117	479	0	ENST00000368508.3:c.6874C>G	p.Leu2292Val	p.L2292V	ENST00000368508	NM_002944.2	2292	Cta/Gta					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118373293	118373293	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	66	479	0	ENST00000534358.1:c.6686C>G	p.Ser2229Ter	p.S2229*	ENST00000534358	NM_005933.3	2229	tCa/tGa					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	23	368	0	ENST00000377767.4:c.1435G>C	p.Asp479His	p.D479H	ENST00000377767	NM_014953.3	479	Gac/Cac					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65569036	65569036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	32	427	0	ENST00000358664.4:c.22G>T	p.Glu8Ter	p.E8*	ENST00000358664	NM_002382.4	8	Gag/Tag					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30038202	30038202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	104	480	0	ENST00000338641.4:c.375G>C	p.Gln125His	p.Q125H	ENST00000338641	NM_000268.3	125	caG/caC					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30050664	30050664	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002775-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	31	460	0	ENST00000338641.4:c.466A>C	p.Ser156Arg	p.S156R	ENST00000338641	NM_000268.3	156	Agt/Cgt					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	397223	397223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001811-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			783	73	432	0	ENST00000380956.4:c.608A>G	p.His203Arg	p.H203R	ENST00000380956	NM_001195286.1	203	cAc/cGc					NEWRECORD																																																																									
FGF19	0	MSKCC	GRCh37	11	69514145	69514145	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001811-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			875	60	620	0	ENST00000294312.3:c.536T>A	p.Leu179His	p.L179H	ENST00000294312	NM_005117.2	179	cTc/cAc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001629-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	385	475	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001629-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	163	600	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001629-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	150	509	0	ENST00000361445.4:c.5930C>T	p.Thr1977Ile	p.T1977I	ENST00000361445	NM_004958.3	1977	aCa/aTa					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001629-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			529	195	507	0	ENST00000206249.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000206249	NM_000125.3	536	cTc/cCc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3900884	3900884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001629-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	261	655	0	ENST00000262367.5:c.212C>T	p.Ser71Leu	p.S71L	ENST00000262367	NM_004380.2	71	tCg/tTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	114	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	63	205	0	ENST00000269305.4:c.700T>A	p.Tyr234Asn	p.Y234N	ENST00000269305	NM_001126112.2	234	Tac/Aac					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30672497	30672497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	44	329	0	ENST00000376406.3:c.4463C>G	p.Thr1488Arg	p.T1488R	ENST00000376406	NM_014641.2	1488	aCa/aGa					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110251306	110251306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	22	235	0	ENST00000374672.4:c.31G>T	p.Ala11Ser	p.A11S	ENST00000374672	NM_004235.4	11	Gct/Tct					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108122617	108122617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	37	381	0	ENST00000278616.4:c.1661C>A	p.Thr554Lys	p.T554K	ENST00000278616	NM_000051.3	554	aCg/aAg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045904	47045904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	105	472	0	ENST00000329236.7:c.2465G>T	p.Gly822Val	p.G822V	ENST00000329236	NM_001204466.1	822	gGt/gTt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48916843	48916843	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	87	205	0	ENST00000267163.4:c.373del	p.Glu125LysfsTer11	p.E125Kfs*11	ENST00000267163	NM_000321.2	125	Gaa/aa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057969	27057969	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	86	256	0	ENST00000324856.7:c.1678del	p.Tyr560ThrfsTer59	p.Y560Tfs*59	ENST00000324856	NM_006015.4	559	ccT/cc					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48027634	48027636	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-			P-0004460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	17	171	0	ENST00000234420.5:c.2512_2514del	p.Pro838del	p.P838del	ENST00000234420	NM_000179.2	838	CCA/-					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591857	48591857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002898-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			123	253	458	0	ENST00000342988.3:c.1020G>C	p.Lys340Asn	p.K340N	ENST00000342988	NM_005359.5	340	aaG/aaC					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002898-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			388	250	396	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa					NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44969468	44969471	+	frameshift_variant	Frame_Shift_Del	DEL	ATGC	ATGC	-			P-0002898-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			97	265	272	0	ENST00000377967.4:c.4151_4154del	p.Met1384LysfsTer8	p.M1384Kfs*8	ENST00000377967	NM_021140.2	1384	ATGCaa/aa					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156849801	156849801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002898-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			274	313	267	0	ENST00000524377.1:c.2057G>A	p.Arg686His	p.R686H	ENST00000524377	NM_002529.3	686	cGc/cAc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5229572	5229572	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002898-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			46	32	69	0	ENST00000357368.4:c.2279A>T	p.Tyr760Phe	p.Y760F	ENST00000357368	NM_002850.3	760	tAc/tTc					NEWRECORD																																																																									
TOP1	7150	MSKCC	GRCh37	20	39721124	39721125	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0002898-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			385	220	393	0	ENST00000361337.2:c.629_630del	p.Arg210LeufsTer3	p.R210Lfs*3	ENST00000361337	NM_003286.2	209	gaGCgc/gagc					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000471-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	108	254	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25457168	25457168	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	85	309	0	ENST00000264709.3:c.2719G>T	p.Glu907Ter	p.E907*	ENST00000264709	NM_175629.2	907	Gag/Tag					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2984019	2984019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	89	406	0	ENST00000396946.4:c.511G>T	p.Val171Leu	p.V171L	ENST00000396946	NM_032415.4	171	Gtg/Ttg					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81355224	81355224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	79	313	0	ENST00000222390.5:c.1150G>A	p.Asp384Asn	p.D384N	ENST00000222390	NM_000601.4	384	Gat/Aat					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101904946	101904947	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	98	319	1	ENST00000374994.4:c.934_935delinsTT	p.Gly312Phe	p.G312F	ENST00000374994	NM_004612.2	312	GGt/TTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	166	372	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	36	255	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17131408	17131408	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	47	247	0	ENST00000285071.4:c.44G>T	p.Gly15Val	p.G15V	ENST00000285071	NM_144997.5	15	gGc/gTc					NEWRECORD																																																																									
XIAP	0	MSKCC	GRCh37	X	123019534	123019534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	72	395	0	ENST00000355640.3:c.22G>A	p.Gly8Arg	p.G8R	ENST00000355640		8	Gga/Aga					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4388076	4388076	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	74	277	0	ENST00000261254.3:c.562T>A	p.Cys188Ser	p.C188S	ENST00000261254	NM_001759.3	188	Tgt/Agt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5273506	5273506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	78	728	0	ENST00000357368.4:c.326C>G	p.Ala109Gly	p.A109G	ENST00000357368	NM_002850.3	109	gCc/gGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	39	446	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	107	526	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9775978	9775978	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	46	403	0	ENST00000377346.4:c.442G>T	p.Glu148Ter	p.E148*	ENST00000377346	NM_005026.3	148	Gag/Tag					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66361105	66361105	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	74	457	0	ENST00000273854.3:c.1066+1G>T		p.X356_splice	ENST00000273854	NM_004439.5	356						NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8521421	8521421	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			311	108	516	0	ENST00000356435.5:c.817G>T	p.Ala273Ser	p.A273S	ENST00000356435		273	Gca/Tca					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87325645	87325645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	59	552	1	ENST00000277120.3:c.522G>T	p.Leu174Phe	p.L174F	ENST00000277120		174	ttG/ttT					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8106054	8106054	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	47	352	0	ENST00000346208.3:c.874A>G	p.Lys292Glu	p.K292E	ENST00000346208		292	Aaa/Gaa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108236229	108236229	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	98	360	0	ENST00000278616.4:c.9165G>A	p.Trp3055Ter	p.W3055*	ENST00000278616	NM_000051.3	3055	tgG/tgA					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245972	46245972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	93	415	0	ENST00000334344.6:c.4066C>A	p.Pro1356Thr	p.P1356T	ENST00000334344	NM_152641.2	1356	Ccg/Acg					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868298	37868298	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	65	309	0	ENST00000269571.5:c.1019G>C	p.Arg340Pro	p.R340P	ENST00000269571		340	cGa/cCa					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39537606	39537606	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	31	431	0	ENST00000262039.4:c.140C>A	p.Ser47Ter	p.S47*	ENST00000262039	NM_002647.2	47	tCa/tAa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610509	10610509	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	117	483	0	ENST00000171111.5:c.201G>T	p.Met67Ile	p.M67I	ENST00000171111	NM_203500.1	67	atG/atT					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000793-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			245	155	220	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	213403218	213403218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000793-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			572	56	375	0	ENST00000342788.4:c.37C>A	p.Leu13Ile	p.L13I	ENST00000342788	NM_005235.2	13	Ctt/Att					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66197837	66197837	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000793-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			310	133	292	0	ENST00000273854.3:c.2862T>G	p.Asn954Lys	p.N954K	ENST00000273854	NM_004439.5	954	aaT/aaG					NEWRECORD																																																																									
RAD51D	0	MSKCC	GRCh37	17	33428240	33428240	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000793-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			605	54	320	0	ENST00000335858.7:c.547C>G	p.Leu183Val	p.L183V	ENST00000335858	NM_133629.2	183	Ctg/Gtg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	573	499	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001548-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	370	551	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0004631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	80	175	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215646021	215646021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	91	265	0	ENST00000260947.4:c.577G>C	p.Glu193Gln	p.E193Q	ENST00000260947	NM_000465.2	193	Gag/Cag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56168719	56168719	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	111	214	0	ENST00000399503.3:c.1573C>T	p.Gln525Ter	p.Q525*	ENST00000399503	NM_005921.1	525	Cag/Tag					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738811	145738811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	20	124	0	ENST00000428558.2:c.2254G>C	p.Glu752Gln	p.E752Q	ENST00000428558	NM_004260.3	752	Gaa/Caa					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121416623	121416623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	57	219	0	ENST00000257555.6:c.52G>C	p.Glu18Gln	p.E18Q	ENST00000257555		18	Gag/Cag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	143	551	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	116	568	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0001702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	177	583	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112116486	112116486	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	115	441	0	ENST00000257430.4:c.532-1G>T		p.X178_splice	ENST00000257430	NM_000038.5	178						NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119795	70119804	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCTATCGA	CCCCTATCGA	-			P-0001702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	118	714	0	ENST00000245479.2:c.798_807del	p.Pro267SerfsTer9	p.P267Sfs*9	ENST00000245479	NM_000346.3	266	cCCCCTATCGAc/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001262-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	52	237	0	ENST00000269305.4:c.392A>G	p.Asn131Ser	p.N131S	ENST00000269305	NM_001126112.2	131	aAc/aGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	488	510	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46743950	46743950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	188	222	0	ENST00000371975.4:c.2240G>A	p.Arg747His	p.R747H	ENST00000371975	NM_003579.3	747	cGc/cAc					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56492802	56492802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			774	276	279	0	ENST00000407977.2:c.137C>T	p.Ala46Val	p.A46V	ENST00000407977		46	gCt/gTt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220644	1220644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	170	478	0	ENST00000326873.7:c.662C>T	p.Pro221Leu	p.P221L	ENST00000326873	NM_000455.4	221	cCg/cTg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000757-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1066	559	367	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578181	7578181	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	142	379	0	ENST00000269305.4:c.668C>T	p.Pro223Leu	p.P223L	ENST00000269305	NM_001126112.2	223	cCt/cTt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173968	112173968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	54	158	0	ENST00000257430.4:c.2677G>T	p.Glu893Ter	p.E893*	ENST00000257430	NM_000038.5	893	Gaa/Taa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			845	118	396	0	ENST00000347630.2:c.397T>C	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	Ttc/Ctc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	60	267	0	ENST00000373198.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000373198	NM_133170.3	546	cGg/cAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	964	215	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	416	209	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876476	35876476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	217	234	0	ENST00000303115.3:c.1268C>G	p.Ser423Cys	p.S423C	ENST00000303115	NM_002185.3	423	tCt/tGt					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18435139	18435139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	184	263	0	ENST00000266497.5:c.124C>G	p.Gln42Glu	p.Q42E	ENST00000266497		42	Cag/Gag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	622	464	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162683575	162683575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			636	119	272	0	ENST00000366898.1:c.394C>A	p.Pro132Thr	p.P132T	ENST00000366898	NM_004562.2	132	Cca/Aca					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370958	55370958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			793	152	159	0	ENST00000297316.4:c.260C>G	p.Ala87Gly	p.A87G	ENST00000297316	NM_022454.3	87	gCg/gGg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431841	49431841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	122	174	0	ENST00000301067.7:c.9298C>T	p.Pro3100Ser	p.P3100S	ENST00000301067	NM_003482.3	3100	Cct/Tct					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68863581	68863581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	131	335	0	ENST00000261769.5:c.2320A>G	p.Arg774Gly	p.R774G	ENST00000261769	NM_004360.3	774	Agg/Ggg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0003367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	102	225	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001343-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			812	2568	411	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11204778	11204778	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001343-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	140	415	1	ENST00000361445.4:c.4799A>G	p.Glu1600Gly	p.E1600G	ENST00000361445	NM_004958.3	1600	gAg/gGg					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435311	56435311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001343-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	86	205	1	ENST00000407977.2:c.1826G>A	p.Arg609Gln	p.R609Q	ENST00000407977		609	cGg/cAg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48951169	48951169	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0001439-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			66	207	186	0	ENST00000267163.4:c.1331A>G	p.Gln444Arg	p.Q444R	ENST00000267163	NM_000321.2	444	cAg/cGg					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48650397	48650397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001439-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	136	678	0	ENST00000376670.3:c.367G>T	p.Asp123Tyr	p.D123Y	ENST00000376670	NM_002049.3	123	Gat/Tat					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115109656	115109658	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0001439-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	153	415	0	ENST00000257566.3:c.2220_2222del	p.Ser740_Ala741delinsArg	p.S740_A741delinsR	ENST00000257566	NM_016569.3	740	agCGCg/agg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	101	617	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			83	10	247	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0001732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	96	570	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	42	319	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9776116	9776116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			250	96	392	0	ENST00000377346.4:c.580G>A	p.Val194Ile	p.V194I	ENST00000377346	NM_005026.3	194	Gtt/Att					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120002	70120002	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			51	169	99	0	ENST00000245479.2:c.1004G>A	p.Trp335Ter	p.W335*	ENST00000245479	NM_000346.3	335	tGg/tAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	228	293	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	75	188	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64571837	64571837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	350	610	0	ENST00000337652.1:c.1817C>A	p.Ser606Tyr	p.S606Y	ENST00000337652	NM_130803.2	606	tCt/tAt					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77047178	77047178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3584	277	457	0	ENST00000356341.3:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000356341	NM_002576.4	456	Gaa/Aaa					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30070871	30070871	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003286-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	222	367	0	ENST00000338641.4:c.1387G>T	p.Glu463Ter	p.E463*	ENST00000338641	NM_000268.3	463	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001931-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	109	333	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0004556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	60	408	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78867614	78867614	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	95	506	0	ENST00000306801.3:c.2350A>G	p.Ile784Val	p.I784V	ENST00000306801	NM_020761.2	784	Atc/Gtc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32190311	32190311	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	37	193	0	ENST00000375023.3:c.428del	p.Cys143SerfsTer109	p.C143Sfs*109	ENST00000375023	NM_004557.3	143	tGc/tc					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33288876	33288876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	104	361	0	ENST00000374542.5:c.676G>A	p.Ala226Thr	p.A226T	ENST00000374542	NM_001141970.1	226	Gca/Aca					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001646-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	23	137	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578184	7578184	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	177	321	0	ENST00000269305.4:c.665del	p.Pro222ArgfsTer25	p.P222Rfs*25	ENST00000269305	NM_001126112.2	222	cCg/cg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183724	10183724	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	43	357	0	ENST00000256474.2:c.193T>A	p.Ser65Thr	p.S65T	ENST00000256474	NM_000551.3	65	Tcg/Acg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118307256	118307256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	13	37	1	ENST00000534358.1:c.29C>T	p.Pro10Leu	p.P10L	ENST00000534358	NM_005933.3	10	cCc/cTc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28908189	28908189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	111	427	0	ENST00000282397.4:c.2566C>T	p.Arg856Trp	p.R856W	ENST00000282397	NM_002019.4	856	Cgg/Tgg					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575560	64575560	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	82	288	0	ENST00000337652.1:c.472del	p.Asp158ThrfsTer32	p.D158Tfs*32	ENST00000337652	NM_130803.2	158	Gac/ac					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692863	89692868	+	inframe_deletion	In_Frame_Del	DEL	ACAATC	ACAATC	-			P-0004141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	64	94	0	ENST00000371953.3:c.348_353del	p.Asn117_His118del	p.N117_H118del	ENST00000371953	NM_000314.4	116	gACAATCat/gat					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599333	55599333	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	405	358	0	ENST00000288135.5:c.2459A>C	p.Asp820Ala	p.D820A	ENST00000288135	NM_000222.2	820	gAt/gCt					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65560493	65560493	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	401	377	1	ENST00000358664.4:c.104G>T	p.Arg35Leu	p.R35L	ENST00000358664	NM_002382.4	35	cGt/cTt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593583	55593604	+	protein_altering_variant	In_Frame_Del	DEL	AACCCATGTATGAAGTACAGTG	AACCCATGTATGAAGTACAGTG	TTCT			P-0004509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	297	426	0	ENST00000288135.5:c.1649_1670delinsTTCT	p.Lys550_Trp557delinsIleLeu	p.K550_W557delinsIL	ENST00000288135	NM_000222.2	550	aAACCCATGTATGAAGTACAGTGg/aTTCTg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	410	308	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
ALOX12B	242	MSKCC	GRCh37	17	7979987	7979987	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1264978849		P-0001366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	56	240	2	ENST00000319144.4:c.1350del	p.Leu451SerfsTer16	p.L451Sfs*16	ENST00000319144	NM_001139.2	450	ggG/gg					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25976488	25976488	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	526	634	1	ENST00000435504.4:c.1057C>T	p.Gln353Ter	p.Q353*	ENST00000435504		353	Cag/Tag					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002025-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	240	648	0	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002025-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	288	536	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0002025-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	161	573	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002025-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	117	625	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174043	112174043	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002025-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	40	425	0	ENST00000257430.4:c.2752del	p.Glu918ArgfsTer37	p.E918Rfs*37	ENST00000257430	NM_000038.5	918	Gag/ag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27097703	27097703	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	178	292	0	ENST00000324856.7:c.3292C>T	p.Gln1098Ter	p.Q1098*	ENST00000324856	NM_006015.4	1098	Cag/Tag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106616	27106616	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	227	284	0	ENST00000324856.7:c.6227A>T	p.Tyr2076Phe	p.Y2076F	ENST00000324856	NM_006015.4	2076	tAc/tTc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66270143	66270143	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			689	164	200	0	ENST00000273854.3:c.1739C>G	p.Thr580Arg	p.T580R	ENST00000273854	NM_004439.5	580	aCa/aGa					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741600	17741600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	67	124	0	ENST00000250003.3:c.271G>T	p.Gly91Cys	p.G91C	ENST00000250003	NM_002478.4	91	Ggc/Tgc					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741569	17741597	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGCGCGCGCCCAGCGGGCACCACCAGG	TGTGCGCGCGCCCAGCGGGCACCACCAGG	-			P-0000519-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	61	153	0	ENST00000250003.3:c.240_268delTGTGCGCGCGCCCAGCGGGCACCACCAGG	p.Val81GlyfsTer37	p.V81Gfs*37	ENST00000250003	NM_002478.4	80	caTGTGCGCGCGCCCAGCGGGCACCACCAGGcg/cacg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	283	390	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	123	443	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43803898	43803898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	138	310	0	ENST00000372470.3:c.208C>T	p.Pro70Ser	p.P70S	ENST00000372470	NM_005373.2	70	Ccg/Tcg					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190660639	190660639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	77	320	0	ENST00000441310.2:c.277C>T	p.Arg93Cys	p.R93C	ENST00000441310	NM_000534.4	93	Cgt/Tgt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212288996	212288996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	76	525	0	ENST00000342788.4:c.2750G>A	p.Gly917Glu	p.G917E	ENST00000342788	NM_005235.2	917	gGa/gAa					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287331	33287331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			680	127	418	0	ENST00000374542.5:c.1766C>T	p.Ser589Phe	p.S589F	ENST00000374542	NM_001141970.1	589	tCc/tTc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344102	118344102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	183	359	0	ENST00000534358.1:c.2228C>T	p.Pro743Leu	p.P743L	ENST00000534358	NM_005933.3	743	cCt/cTt					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118361911	118361911	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	159	341	0	ENST00000534358.1:c.4697G>A	p.Gly1566Glu	p.G1566E	ENST00000534358	NM_005933.3	1566	gGa/gAa					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118391528	118391528	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	168	290	0	ENST00000534358.1:c.11441G>A	p.Ser3814Asn	p.S3814N	ENST00000534358	NM_005933.3	3814	aGc/aAc					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121434545	121434545	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			590	119	426	0	ENST00000257555.6:c.1309G>A	p.Gly437Ser	p.G437S	ENST00000257555		437	Ggc/Agc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29005320	29005320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	75	505	0	ENST00000282397.4:c.941G>T	p.Arg314Met	p.R314M	ENST00000282397	NM_002019.4	314	aGg/aTg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49047495	49047495	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	52	390	0	ENST00000267163.4:c.2490-1G>A		p.X830_splice	ENST00000267163	NM_000321.2	830						NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40730918	40730918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	133	251	0	ENST00000373198.4:c.3617C>T	p.Pro1206Leu	p.P1206L	ENST00000373198	NM_133170.3	1206	cCc/cTc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41573868	41573868	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	133	468	0	ENST00000263253.7:c.6153A>C	p.Leu2051Phe	p.L2051F	ENST00000263253	NM_001429.3	2051	ttA/ttC					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939505	76939505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	135	501	1	ENST00000373344.5:c.1243T>C	p.Ser415Pro	p.S415P	ENST00000373344	NM_000489.3	415	Tcc/Ccc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70406663	70406667	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAA	AAAAA	-			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	109	458	1	ENST00000373644.4:c.4177_4181del	p.Lys1393PhefsTer2	p.K1393Ffs*2	ENST00000373644	NM_030625.2	1393	AAAAAt/t					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41573873	41573875	+	missense_variant	Missense_Mutation	ONP	ACC	ACC	CCT			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	132	466	0	ENST00000263253.7:c.6158_6160delinsCCT	p.Asn2053_Leu2054delinsThrPhe	p.N2053_L2054delinsTF	ENST00000263253	NM_001429.3	2053	aACCtt/aCCTtt					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119148875	119148876	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	87	244	0	ENST00000264033.4:c.1096-1_1096delGGinsAA		p.X366_splice	ENST00000264033	NM_005188.3	366						NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18656268	18656269	+	missense_variant	Missense_Mutation	DNP	TC	TC	CA			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	70	480	1	ENST00000266497.5:c.2947_2948delinsCA	p.Ser983His	p.S983H	ENST00000266497		983	TCt/CAt					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14029464	14029465	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	142	330	0	ENST00000311895.7:c.1675_1676delinsAA	p.Gly559Asn	p.G559N	ENST00000311895	NM_005236.2	559	GGt/AAt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105694	27105695	+	stop_gained	Nonsense_Mutation	DNP	CT	CT	TA			P-0002157-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	41	365	0	ENST00000324856.7:c.5305_5306delinsTA	p.Leu1769Ter	p.L1769*	ENST00000324856	NM_006015.4	1769	CTa/TAa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8500933	8500933	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1076	100	395	0	ENST00000356435.5:c.1949C>A	p.Thr650Asn	p.T650N	ENST00000356435		650	aCt/aAt					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18435287	18435287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002314-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1100	95	405	0	ENST00000266497.5:c.272C>T	p.Ser91Phe	p.S91F	ENST00000266497		91	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003854-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			150	110	240	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003854-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			295	209	357	2	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212587162	212587162	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003854-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			725	135	404	0	ENST00000342788.4:c.839A>G	p.Asn280Ser	p.N280S	ENST00000342788	NM_005235.2	280	aAt/aGt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178938938	178938938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003854-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			247	17	133	0	ENST00000263967.3:c.2180C>T	p.Thr727Ile	p.T727I	ENST00000263967	NM_006218.2	727	aCa/aTa					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185146743	185146743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003854-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			203	288	304	0	ENST00000265026.3:c.374G>T	p.Ser125Ile	p.S125I	ENST00000265026	NM_004721.4	125	aGt/aTt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532615	187532615	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003854-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			440	123	394	0	ENST00000441802.2:c.9778G>A	p.Glu3260Lys	p.E3260K	ENST00000441802	NM_005245.3	3260	Gaa/Aaa					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66679750	66679750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003854-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			342	172	433	1	ENST00000307102.5:c.65G>T	p.Gly22Val	p.G22V	ENST00000307102	NM_002755.3	22	gGg/gTg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40911128	40911128	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003854-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			860	257	561	0	ENST00000373198.4:c.2176+1G>T		p.X726_splice	ENST00000373198	NM_133170.3	726						NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20480167	20480167	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003854-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			588	63	423	0	ENST00000346618.3:c.484C>T	p.Arg162Ter	p.R162*	ENST00000346618	NM_001949.4	162	Cga/Tga					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372347	55372347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003854-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			305	30	264	0	ENST00000297316.4:c.1037C>T	p.Thr346Met	p.T346M	ENST00000297316	NM_022454.3	346	aCg/aTg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66942794	66942794	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003854-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	71	585	0	ENST00000374690.3:c.2575C>T	p.Gln859Ter	p.Q859*	ENST00000374690	NM_000044.3	859	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0000855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	168	543	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
CDK6	0	MSKCC	GRCh37	7	92300792	92300792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	34	239	0	ENST00000265734.4:c.595C>G	p.Pro199Ala	p.P199A	ENST00000265734	NM_001259.6	199	Ccc/Gcc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17953201	17953201	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	19	386	0	ENST00000458235.1:c.785T>G	p.Leu262Arg	p.L262R	ENST00000458235	NM_000215.3	262	cTt/cGt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76849170	76849170	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	192	418	1	ENST00000373344.5:c.6106A>T	p.Lys2036Ter	p.K2036*	ENST00000373344	NM_000489.3	2036	Aaa/Taa					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115956	8115956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000522-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	167	162	0	ENST00000346208.3:c.1305delC	p.Ser436ProfsTer39	p.S436Pfs*39	ENST00000346208		434	caC/ca					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108190686	108190686	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000522-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	307	224	0	ENST00000278616.4:c.6354delA	p.Val2119Ter	p.V2119*	ENST00000278616	NM_000051.3	2118	gAa/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001570-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	255	2142	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88423601	88423601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001570-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	242	2691	3	ENST00000360948.2:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000360948	NM_001012338.2	745	cGg/cAg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212251805	212251805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001570-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	84	2178	1	ENST00000342788.4:c.3254C>T	p.Thr1085Ile	p.T1085I	ENST00000342788	NM_005235.2	1085	aCt/aTt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5245984	5245984	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001570-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	247	2537	0	ENST00000357368.4:c.791T>C	p.Ile264Thr	p.I264T	ENST00000357368	NM_002850.3	264	aTc/aCc					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9777666	9777666	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000893-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			132	70	277	0	ENST00000377346.4:c.1002C>A	p.Asn334Lys	p.N334K	ENST00000377346	NM_005026.3	334	aaC/aaA					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117725458	117725458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000893-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			151	11	402	0	ENST00000368508.3:c.423C>A	p.Ser141Arg	p.S141R	ENST00000368508	NM_002944.2	141	agC/agA					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971023	21971023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000893-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			106	41	229	0	ENST00000304494.5:c.335G>C	p.Arg112Pro	p.R112P	ENST00000304494	NM_000077.4	112	cGt/cCt					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971023	21971023	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000893-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			106	41	229	0	ENST00000304494.5:c.335G>C	p.Arg112Pro	p.R112P	ENST00000304494	NM_000077.4	112	cGt/cCt					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115764	8115764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000893-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			150	12	551	0	ENST00000346208.3:c.1110C>A	p.Ser370Arg	p.S370R	ENST00000346208		370	agC/agA					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0000893-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			127	47	381	0	ENST00000307102.5:c.303_308delGGAGAT	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0003879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	315	215	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116411709	116411709	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0003879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	84	268	0	ENST00000397752.3:c.2887+1G>A		p.X963_splice	ENST00000397752	NM_000245.2	963						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0003879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	231	230	0	ENST00000269305.4:c.375+2T>C		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17955109	17955109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140784576		P-0003879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	98	312	0	ENST00000458235.1:c.118C>T	p.Arg40Cys	p.R40C	ENST00000458235	NM_000215.3	40	Cgc/Tgc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53231106	53231106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	158	465	1	ENST00000375401.3:c.1796G>A	p.Arg599His	p.R599H	ENST00000375401	NM_004187.3	599	cGt/cAt					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106155312	106155316	+	frameshift_variant	Frame_Shift_Del	DEL	TAGTC	TAGTC	-			P-0003879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	323	339	0	ENST00000380013.4:c.213_217del	p.Asn71LysfsTer5	p.N71Kfs*5	ENST00000380013	NM_001127208.2	71	aaTAGTCgt/aagt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002319-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			807	25	418	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	272	408	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139409128	139409128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	94	279	0	ENST00000277541.6:c.2041G>A	p.Glu681Lys	p.E681K	ENST00000277541	NM_017617.3	681	Gag/Aag					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14029336	14029336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	82	395	0	ENST00000311895.7:c.1547G>T	p.Arg516Leu	p.R516L	ENST00000311895	NM_005236.2	516	cGa/cTa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47038877	47038877	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	16	129	0	ENST00000329236.7:c.653C>G	p.Ser218Ter	p.S218*	ENST00000329236	NM_001204466.1	218	tCa/tGa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0000552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	269	161	4	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	336	367	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142231170	142231170	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			630	291	340	0	ENST00000350721.4:c.4784A>T	p.Lys1595Ile	p.K1595I	ENST00000350721	NM_001184.3	1595	aAa/aTa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50459522	50459522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	115	183	0	ENST00000331340.3:c.811G>A	p.Val271Ile	p.V271I	ENST00000331340	NM_006060.4	271	Gtc/Atc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0000552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	196	172	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575103	48575103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	35	295	0	ENST00000342988.3:c.297G>T	p.Trp99Cys	p.W99C	ENST00000342988	NM_005359.5	99	tgG/tgT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	30	485	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	42	649	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg					NEWRECORD																																																																									
HIST3H3	0	MSKCC	GRCh37	1	228612975	228612975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	36	470	0	ENST00000366696.1:c.52C>A	p.Arg18Ser	p.R18S	ENST00000366696	NM_003493.2	18	Cgc/Agc					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25972870	25972870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	32	474	0	ENST00000435504.4:c.1555G>C	p.Glu519Gln	p.E519Q	ENST00000435504		519	Gaa/Caa					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180036987	180036987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	43	516	0	ENST00000261937.6:c.3725G>C	p.Arg1242Thr	p.R1242T	ENST00000261937	NM_182925.4	1242	aGa/aCa					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453179	140453179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	27	280	0	ENST00000288602.6:c.1756G>A	p.Glu586Lys	p.E586K	ENST00000288602	NM_004333.4	586	Gaa/Aaa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112395	115112395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	17	190	0	ENST00000257566.3:c.1345C>A	p.Leu449Met	p.L449M	ENST00000257566	NM_016569.3	449	Ctg/Atg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89725055	89725055	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	64	145	0	ENST00000371953.3:c.1038C>G	p.Tyr346Ter	p.Y346*	ENST00000371953	NM_000314.4	346	taC/taG					NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30134479	30134479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	36	137	0	ENST00000263025.4:c.52G>C	p.Glu18Gln	p.E18Q	ENST00000263025	NM_002746.2	18	Gag/Cag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56178638	56178707	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAGTTCCTCAGCTGCAGGTTGAAAATGGAGAAGATATCATCATTATTCAACAGGATGTAAGTATAGATTC	TAGTTCCTCAGCTGCAGGTTGAAAATGGAGAAGATATCATCATTATTCAACAGGATGTAAGTATAGATTC	-			P-0003141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	26	98	0	ENST00000399503.3:c.3612_3666+15del		p.X1204_splice	ENST00000399503	NM_005921.1	1204						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002809-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			724	19	399	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0001894-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	280	351	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183656	10183656	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001894-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			966	236	372	0	ENST00000256474.2:c.125A>T	p.Glu42Val	p.E42V	ENST00000256474	NM_000551.3	42	gAg/gTg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	235	620	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175118	112175118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	177	407	0	ENST00000257430.4:c.3827C>A	p.Ser1276Ter	p.S1276*	ENST00000257430	NM_000038.5	1276	tCa/tAa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945387	151945387	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	41	259	0	ENST00000262189.6:c.2132C>G	p.Pro711Arg	p.P711R	ENST00000262189	NM_170606.2	711	cCt/cGt					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118339530	118339530	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	126	631	0	ENST00000534358.1:c.473G>C	p.Arg158Thr	p.R158T	ENST00000534358	NM_005933.3	158	aGa/aCa					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56480341	56480341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			620	642	575	0	ENST00000267101.3:c.448G>A	p.Glu150Lys	p.E150K	ENST00000267101	NM_001982.3	150	Gag/Aag					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26978097	26978097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	1619	651	2	ENST00000381527.3:c.1274C>G	p.Ser425Cys	p.S425C	ENST00000381527	NM_001260.1	425	tCc/tGc					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23647556	23647556	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			880	316	605	0	ENST00000261584.4:c.311C>G	p.Pro104Arg	p.P104R	ENST00000261584	NM_024675.3	104	cCt/cGt					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7976555	7976555	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	626	553	0	ENST00000319144.4:c.1837G>T	p.Glu613Ter	p.E613*	ENST00000319144	NM_001139.2	613	Gag/Tag					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044997	47044997	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	138	261	0	ENST00000329236.7:c.2089A>G	p.Ile697Val	p.I697V	ENST00000329236	NM_001204466.1	697	Atc/Gtc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577497	7577509	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACCTGGAGTCTTC	ACCTGGAGTCTTC	-			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	269	408	0	ENST00000269305.4:c.772_782+2del		p.X258_splice	ENST00000269305	NM_001126112.2	258						NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0001864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			556	582	580	0	ENST00000256078.4:c.38_39delinsTT	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGC/gTT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			658	260	349	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1254	327	661	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89391236	89391236	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			376	52	158	0	ENST00000336596.2:c.1302G>T	p.Gln434His	p.Q434H	ENST00000336596	NM_005233.5	434	caG/caT					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178937437	178937437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			517	58	254	1	ENST00000263967.3:c.1825C>T	p.Pro609Ser	p.P609S	ENST00000263967	NM_006218.2	609	Cct/Tct					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245455	153245455	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			820	371	478	0	ENST00000281708.4:c.1736G>T	p.Gly579Val	p.G579V	ENST00000281708	NM_033632.3	579	gGg/gTg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187629504	187629504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			682	408	566	0	ENST00000441802.2:c.1478G>T	p.Gly493Val	p.G493V	ENST00000441802	NM_005245.3	493	gGt/gTt					NEWRECORD																																																																									
HIST1H3A	0	MSKCC	GRCh37	6	26021096	26021096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			492	37	150	0	ENST00000357647.3:c.379C>T	p.Leu127Phe	p.L127F	ENST00000357647	NM_003529.2	127	Ctc/Ttc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610415	10610415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			551	395	521	0	ENST00000171111.5:c.295G>A	p.Val99Met	p.V99M	ENST00000171111	NM_203500.1	99	Gtg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	46	383	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63852534	63852534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	20	206	1	ENST00000279873.7:c.3312G>C	p.Gln1104His	p.Q1104H	ENST00000279873	NM_032199.2	1104	caG/caC					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2124249	2124249	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	16	310	0	ENST00000219476.3:c.2404A>C	p.Ser802Arg	p.S802R	ENST00000219476	NM_000548.3	802	Agc/Cgc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857811	9857811	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	14	295	0	ENST00000330684.3:c.3590G>T	p.Gly1197Val	p.G1197V	ENST00000330684	NM_001134407.1	1197	gGt/gTt					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7983153	7983153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	29	365	0	ENST00000319144.4:c.861C>G	p.Phe287Leu	p.F287L	ENST00000319144	NM_001139.2	287	ttC/ttG					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36206884	36206884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	14	109	0	ENST00000300305.3:c.628C>G	p.Leu210Val	p.L210V	ENST00000300305		210	Cta/Gta					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44941887	44941887	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	36	362	0	ENST00000377967.4:c.3209+2T>G		p.X1070_splice	ENST00000377967	NM_021140.2	1070						NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119720939	119720966	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGAATCACAAAGTTTGGCTTGATATA	CCTGAATCACAAAGTTTGGCTTGATATA	-			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	53	317	0	ENST00000316626.5:c.209_236del	p.Val70GlufsTer23	p.V70Efs*23	ENST00000316626		70	gTATATCAAGCCAAACTTTGTGATTCAGGa/ga					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162737133	162737144	+	inframe_deletion	In_Frame_Del	DEL	AGAAAATGCTGG	AGAAAATGCTGG	-			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	17	202	0	ENST00000367921.3:c.1281_1292del	p.Met428_Lys431del	p.M428_K431del	ENST00000367921	NM_006182.2	426	cAGAAAATGCTGGag/cag					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39934342	39934343	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	23	321	0	ENST00000378444.4:c.256_257delinsTT	p.Gly86Leu	p.G86L	ENST00000378444	NM_001123385.1	86	GGa/TTa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157093	106157093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	359	484	0	ENST00000380013.4:c.1994C>A	p.Thr665Lys	p.T665K	ENST00000380013	NM_001127208.2	665	aCa/aAa					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106520000	106520000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			840	165	390	0	ENST00000359195.3:c.2428C>A	p.Pro810Thr	p.P810T	ENST00000359195	NM_002649.2	810	Cca/Aca					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80646059	80646059	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	50	161	0	ENST00000286548.4:c.93G>C	p.Arg31Ser	p.R31S	ENST00000286548	NM_002072.3	31	agG/agC					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135782153	135782153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			731	195	506	0	ENST00000298552.3:c.1403C>T	p.Ser468Phe	p.S468F	ENST00000298552	NM_001162426.1	468	tCt/tTt					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139396341	139396341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	133	372	0	ENST00000277541.6:c.5497G>A	p.Asp1833Asn	p.D1833N	ENST00000277541	NM_017617.3	1833	Gac/Aac					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108155200	108155200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	243	355	0	ENST00000278616.4:c.3993G>T	p.Gln1331His	p.Q1331H	ENST00000278616	NM_000051.3	1331	caG/caT					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112924327	112924327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			671	240	423	0	ENST00000351677.2:c.1273G>T	p.Asp425Tyr	p.D425Y	ENST00000351677	NM_002834.3	425	Gac/Tac					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133249269	133249269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	302	393	1	ENST00000320574.5:c.1630G>T	p.Val544Leu	p.V544L	ENST00000320574	NM_006231.2	544	Gtg/Ttg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108160415	108160415	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002187-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	326	438	1	ENST00000278616.4:c.4323del	p.Tyr1442IlefsTer9	p.Y1442Ifs*9	ENST00000278616	NM_000051.3	1441	atA/at					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0004090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	336	328	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32972840	32972840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	852	213	0	ENST00000380152.3:c.10190C>T	p.Ser3397Phe	p.S3397F	ENST00000380152		3397	tCc/tTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	256	488	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36932083	36932083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	239	546	0	ENST00000361632.4:c.2386C>T	p.Pro796Ser	p.P796S	ENST00000361632		796	Ccc/Tcc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16024488	16024488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	232	393	2	ENST00000268712.3:c.1730G>A	p.Ser577Asn	p.S577N	ENST00000268712	NM_006311.3	577	aGt/aAt					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187447406	187447406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001259-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	65	239	0	ENST00000232014.4:c.787G>A	p.Glu263Lys	p.E263K	ENST00000232014	NM_001130845.1	263	Gaa/Aaa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183872	10183872	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0001522-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	74	198	0	ENST00000256474.2:c.340+1G>A		p.X114_splice	ENST00000256474	NM_000551.3	114						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47139519	47139519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001522-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	154	492	0	ENST00000409792.3:c.5068G>C	p.Gly1690Arg	p.G1690R	ENST00000409792	NM_014159.6	1690	Gga/Cga					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442077	52442077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001522-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	103	290	0	ENST00000460680.1:c.272G>T	p.Cys91Phe	p.C91F	ENST00000460680	NM_004656.3	91	tGt/tTt					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001522-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	256	399	0	ENST00000289153.2:c.3199G>C	p.Asp1067His	p.D1067H	ENST00000289153	NM_006219.2	1067	Gac/Cac					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142254009	142254009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001522-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	36	265	0	ENST00000350721.4:c.3858G>T	p.Gln1286His	p.Q1286H	ENST00000350721	NM_001184.3	1286	caG/caT					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15276755	15276755	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138265894		P-0001522-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	95	423	1	ENST00000263388.2:c.5510G>A	p.Arg1837His	p.R1837H	ENST00000263388	NM_000435.2	1837	cGt/cAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	62	162	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	135	248	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99182557	99182557	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	129	277	0	ENST00000074304.5:c.2360A>G	p.Gln787Arg	p.Q787R	ENST00000074304	NM_001134224.1	787	cAg/cGg					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53223439	53223439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	198	416	1	ENST00000375401.3:c.3920G>A	p.Arg1307Gln	p.R1307Q	ENST00000375401	NM_004187.3	1307	cGg/cAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	298	423	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	142	233	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227662082	227662082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	104	320	0	ENST00000305123.5:c.1373G>C	p.Gly458Ala	p.G458A	ENST00000305123	NM_005544.2	458	gGt/gCt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55955556	55955556	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	228	497	0	ENST00000263923.4:c.3389A>T	p.Tyr1130Phe	p.Y1130F	ENST00000263923	NM_002253.2	1130	tAt/tTt					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31945066	31945066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			260	128	222	0	ENST00000340398.3:c.35C>A	p.Thr12Asn	p.T12N	ENST00000340398	NM_001013699.2	12	aCc/aAc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602823	10602823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002412-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	195	295	0	ENST00000171111.5:c.755G>T	p.Trp252Leu	p.W252L	ENST00000171111	NM_203500.1	252	tGg/tTg					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	175956224	175956224	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000334-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			930	205	256	0	ENST00000367669.3:c.1988C>G	p.Ser663Cys	p.S663C	ENST00000367669	NM_022457.5	663	tCt/tGt					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47707916	47707916	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000334-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			832	149	297	0	ENST00000233146.2:c.2540A>C	p.Lys847Thr	p.K847T	ENST00000233146	NM_000251.2	847	aAa/aCa					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185165665	185165665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000334-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			945	173	261	0	ENST00000265026.3:c.940G>T	p.Ala314Ser	p.A314S	ENST00000265026	NM_004721.4	314	Gct/Tct					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431976	49431976	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000334-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1058	267	399	0	ENST00000301067.7:c.9163C>T	p.Pro3055Ser	p.P3055S	ENST00000301067	NM_003482.3	3055	Cct/Tct					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41553356	41553356	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000334-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	296	406	0	ENST00000263253.7:c.3445T>C	p.Phe1149Leu	p.F1149L	ENST00000263253	NM_001429.3	1149	Ttt/Ctt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123181269	123181269	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000334-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	526	385	0	ENST00000218089.9:c.733C>G	p.Gln245Glu	p.Q245E	ENST00000218089	NM_001042749.1	245	Caa/Gaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578535	7578535	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000334-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	286	232	0	ENST00000269305.4:c.395delA	p.Lys132ArgfsTer38	p.K132Rfs*38	ENST00000269305	NM_001126112.2	132	aAg/ag					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1320	1006	407	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	1640	318	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	301	437	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	133	392	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851006	63851006	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	71	310	0	ENST00000279873.7:c.1784T>A	p.Phe595Tyr	p.F595Y	ENST00000279873	NM_032199.2	595	tTc/tAc					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99452113	99452113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	70	337	0	ENST00000268035.6:c.1447G>A	p.Gly483Arg	p.G483R	ENST00000268035	NM_000875.3	483	Ggg/Agg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	134	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	78	138	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173975	112173975	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	105	192	0	ENST00000257430.4:c.2684C>A	p.Ser895Ter	p.S895*	ENST00000257430	NM_000038.5	895	tCa/tAa					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	393168	393168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	117	198	0	ENST00000380956.4:c.16G>A	p.Gly6Ser	p.G6S	ENST00000380956	NM_001195286.1	6	Ggc/Agc					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45371710	45371710	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	128	313	0	ENST00000262160.6:c.1280+1G>T		p.X427_splice	ENST00000262160	NM_005901.5	427						NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70354597	70354597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	160	399	0	ENST00000374080.3:c.4762G>A	p.Val1588Met	p.V1588M	ENST00000374080		1588	Gtg/Atg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175636	112175636	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	209	375	0	ENST00000257430.4:c.4346del	p.Lys1449SerfsTer24	p.K1449Sfs*24	ENST00000257430	NM_000038.5	1449	Aag/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	415	282	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139401400	139401400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	157	156	0	ENST00000277541.6:c.3669C>A	p.Asp1223Glu	p.D1223E	ENST00000277541	NM_017617.3	1223	gaC/gaA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	41	320	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47098478	47098478	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	25	349	0	ENST00000409792.3:c.6796C>T	p.Gln2266Ter	p.Q2266*	ENST00000409792	NM_014159.6	2266	Cag/Tag					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32166449	32166449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	48	522	0	ENST00000375023.3:c.4594G>A	p.Glu1532Lys	p.E1532K	ENST00000375023	NM_004557.3	1532	Gag/Aag					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64572588	64572588	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	38	233	0	ENST00000337652.1:c.1283G>A	p.Trp428Ter	p.W428*	ENST00000337652	NM_130803.2	428	tGg/tAg					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119144609	119144609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	42	416	0	ENST00000264033.4:c.622G>T	p.Ala208Ser	p.A208S	ENST00000264033	NM_005188.3	208	Gct/Tct					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49440097	49440097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	40	399	0	ENST00000301067.7:c.4529G>A	p.Cys1510Tyr	p.C1510Y	ENST00000301067	NM_003482.3	1510	tGt/tAt					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2136342	2136342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	28	393	0	ENST00000219476.3:c.4811G>A	p.Gly1604Asp	p.G1604D	ENST00000219476	NM_000548.3	1604	gGc/gAc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573666	48573666	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	18	160	0	ENST00000342988.3:c.249+1G>A		p.X83_splice	ENST00000342988	NM_005359.5	83						NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33288192	33288193	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0004223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	34	266	0	ENST00000374542.5:c.1215_1216del	p.Ala406ArgfsTer11	p.A406Rfs*11	ENST00000374542	NM_001141970.1	405	tcTGca/tcca					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002865-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			25	212	312	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467412	66467412	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002865-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	85	294	0	ENST00000273854.3:c.857T>A	p.Ile286Asn	p.I286N	ENST00000273854	NM_004439.5	286	aTc/aAc					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145737817	145737817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002865-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	53	220	1	ENST00000428558.2:c.3013C>T	p.Arg1005Trp	p.R1005W	ENST00000428558	NM_004260.3	1005	Cgg/Tgg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48947603	48947603	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002865-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	230	353	0	ENST00000267163.4:c.1190C>G	p.Ser397Ter	p.S397*	ENST00000267163	NM_000321.2	397	tCa/tGa					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103504481	103504481	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002865-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	108	285	0	ENST00000355739.4:c.102G>T	p.Trp34Cys	p.W34C	ENST00000355739	NM_000123.3	34	tgG/tgT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002865-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			37	164	264	0	ENST00000269305.4:c.718A>T	p.Ser240Cys	p.S240C	ENST00000269305	NM_001126112.2	240	Agt/Tgt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002865-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			26	266	408	0	ENST00000171111.5:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000171111	NM_203500.1	422	Gat/Aat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002213-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			767	167	398	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0002213-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	88	320	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593667	55593669	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0004645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	201	395	0	ENST00000288135.5:c.1735_1737del	p.Asp579del	p.D579del	ENST00000288135	NM_000222.2	578	tATGat/tat					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0001097-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			765	230	348	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120465274	120465274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001080-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	182	283	0	ENST00000256646.2:c.4987C>G	p.Leu1663Val	p.L1663V	ENST00000256646	NM_024408.3	1663	Ctt/Gtt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8460441	8460441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001080-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	185	300	0	ENST00000356435.5:c.3845G>A	p.Cys1282Tyr	p.C1282Y	ENST00000356435		1282	tGc/tAc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8521487	8521487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001080-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	218	357	0	ENST00000356435.5:c.751G>A	p.Gly251Arg	p.G251R	ENST00000356435		251	Gga/Aga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001080-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	109	308	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29562720	29562720	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001080-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	297	540	0	ENST00000358273.4:c.3800T>A	p.Leu1267Ter	p.L1267*	ENST00000358273	NM_001042492.2	1267	tTg/tAg					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	756634	756634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001080-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	288	633	0	ENST00000314574.4:c.194C>T	p.Ser65Phe	p.S65F	ENST00000314574	NM_005433.3	65	tCc/tTc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48881458	48881483	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTCAGAAATTAAAGATACCAGATC	ATGTCAGAAATTAAAGATACCAGATC	-			P-0001080-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	112	341	0	ENST00000267163.4:c.188_213del	p.Lys63ArgfsTer38	p.K63Rfs*38	ENST00000267163	NM_000321.2	60	ttATGTCAGAAATTAAAGATACCAGATCat/ttat					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	12	372	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164419	47164419	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	12	337	0	ENST00000409792.3:c.1707del	p.Phe569LeufsTer10	p.F569Lfs*10	ENST00000409792	NM_014159.6	569	ttT/tt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041557	42041565	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGAAACC	TCTGAAACC	G			P-0004594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	14	637	0	ENST00000219905.7:c.5752_5760delinsG	p.Ser1918GlufsTer5	p.S1918Efs*5	ENST00000219905	NM_001164273.1	1918	TCTGAAACC/G					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2108828	2108828	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	493	513	1	ENST00000219476.3:c.929A>G	p.Tyr310Cys	p.Y310C	ENST00000219476	NM_000548.3	310	tAt/tGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001305-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	119	610	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226556019	226556019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001305-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	97	242	0	ENST00000366794.5:c.2158G>T	p.Val720Leu	p.V720L	ENST00000366794	NM_001618.3	720	Gtg/Ttg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134920381	134920381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001305-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	85	531	0	ENST00000398015.3:c.2196G>A	p.Met732Ile	p.M732I	ENST00000398015	NM_004441.4	732	atG/atA					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36259174	36259174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001305-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	153	539	0	ENST00000300305.3:c.317G>T	p.Trp106Leu	p.W106L	ENST00000300305		106	tGg/tTg					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47428427	47428427	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001305-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	29	792	0	ENST00000377045.4:c.1295C>G	p.Ser432Cys	p.S432C	ENST00000377045	NM_001654.4	432	tCt/tGt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339327	70339327	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001305-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	30	386	0	ENST00000374080.3:c.204G>T	p.Lys68Asn	p.K68N	ENST00000374080		68	aaG/aaT					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	30	197	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002789-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	95	375	2	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151868398	151868398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			887	101	511	0	ENST00000262189.6:c.9404G>T	p.Gly3135Val	p.G3135V	ENST00000262189	NM_170606.2	3135	gGa/gTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579366	7579369	+	frameshift_variant	Frame_Shift_Del	DEL	GTAG	GTAG	-			P-0002106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	153	297	0	ENST00000269305.4:c.318_321del	p.Ser106ArgfsTer16	p.S106Rfs*16	ENST00000269305	NM_001126112.2	106	agCTAC/ag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945549	151945553	+	protein_altering_variant	In_Frame_Del	DEL	GTAAC	GTAAC	TG			P-0002106-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	73	98	0	ENST00000262189.6:c.1966_1970delinsCA	p.Val656_Thr657delinsGln	p.V656_T657delinsQ	ENST00000262189	NM_170606.2	656	GTTACa/CAa					NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	130	438	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29754908	29754908	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	65	259	0	ENST00000389048.3:c.1027G>C	p.Glu343Gln	p.E343Q	ENST00000389048	NM_004304.4	343	Gag/Cag					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227663054	227663054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	67	302	0	ENST00000305123.5:c.401G>T	p.Gly134Val	p.G134V	ENST00000305123	NM_005544.2	134	gGc/gTc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142183938	142183938	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	91	450	0	ENST00000350721.4:c.7041+1G>T		p.X2347_splice	ENST00000350721	NM_001184.3	2347						NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142242962	142242962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	130	488	0	ENST00000350721.4:c.4025G>T	p.Gly1342Val	p.G1342V	ENST00000350721	NM_001184.3	1342	gGt/gTt					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5123050	5123050	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	113	399	0	ENST00000381652.3:c.3106G>C	p.Asp1036His	p.D1036H	ENST00000381652	NM_004972.3	1036	Gat/Cat					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49418361	49418361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	87	246	0	ENST00000301067.7:c.16052G>A	p.Arg5351Gln	p.R5351Q	ENST00000301067	NM_003482.3	5351	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	215	178	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25991736	25991736	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	96	190	0	ENST00000435504.4:c.506C>T	p.Ala169Val	p.A169V	ENST00000435504		169	gCg/gTg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952138	178952138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	40	320	2	ENST00000263967.3:c.3193C>T	p.His1065Tyr	p.H1065Y	ENST00000263967	NM_006218.2	1065	Cat/Tat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	132	621	0	ENST00000269305.4:c.645T>A	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agA					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16012151	16012151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	79	625	0	ENST00000268712.3:c.2131G>A	p.Asp711Asn	p.D711N	ENST00000268712	NM_006311.3	711	Gat/Aat					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0003495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	97	481	0	ENST00000275493.2:c.2239_2240delTTinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610608	81610608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			954	65	554	0	ENST00000298171.2:c.2206G>A	p.Glu736Lys	p.E736K	ENST00000298171	NM_000369.2	736	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			854	29	542	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163293	32163293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1110	89	633	0	ENST00000375023.3:c.5933G>A	p.Arg1978Gln	p.R1978Q	ENST00000375023	NM_004557.3	1978	cGg/cAg					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741731	145741731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			862	83	501	0	ENST00000428558.2:c.772G>A	p.Gly258Arg	p.G258R	ENST00000428558	NM_004260.3	258	Gga/Aga					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49424400	49424400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			978	54	528	0	ENST00000301067.7:c.13823C>T	p.Ser4608Phe	p.S4608F	ENST00000301067	NM_003482.3	4608	tCc/tTc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15298107	15298107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			652	42	366	0	ENST00000263388.2:c.1649C>T	p.Ser550Phe	p.S550F	ENST00000263388	NM_000435.2	550	tCc/tTc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556071	29556071	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	52	291	0	ENST00000358273.4:c.2439del	p.Lys814ArgfsTer7	p.K814Rfs*7	ENST00000358273	NM_001042492.2	813	gTt/gt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577540	7577541	+	missense_variant	Missense_Mutation	DNP	GT	GT	TA			P-0001736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	35	401	0	ENST00000269305.4:c.740_741delinsTA	p.Asn247Ile	p.N247I	ENST00000269305	NM_001126112.2	247	aAC/aTA					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041720	47041720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	52	274	0	ENST00000329236.7:c.1711C>T	p.Gln571Ter	p.Q571*	ENST00000329236	NM_001204466.1	571	Caa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			737	291	371	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78425878	78425878	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	33	185	0	ENST00000370768.2:c.1567C>A	p.Pro523Thr	p.P523T	ENST00000370768	NM_003902.3	523	Cct/Act					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266831	198266831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	66	321	0	ENST00000335508.6:c.2101G>T	p.Val701Phe	p.V701F	ENST00000335508	NM_012433.2	701	Gtt/Ttt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267400	198267400	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			636	51	351	0	ENST00000335508.6:c.1957A>C	p.Lys653Gln	p.K653Q	ENST00000335508	NM_012433.2	653	Aaa/Caa					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70014114	70014114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	53	376	0	ENST00000352241.4:c.1278C>G	p.Ser426Arg	p.S426R	ENST00000352241	NM_198159.2	426	agC/agG					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55573368	55573368	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	80	354	0	ENST00000288135.5:c.1030G>C	p.Glu344Gln	p.E344Q	ENST00000288135	NM_000222.2	344	Gaa/Caa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187549752	187549752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			680	44	395	0	ENST00000441802.2:c.4489A>G	p.Arg1497Gly	p.R1497G	ENST00000441802	NM_005245.3	1497	Aga/Gga					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2952953	2952953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	27	259	0	ENST00000396946.4:c.2987G>T	p.Gly996Val	p.G996V	ENST00000396946	NM_032415.4	996	gGa/gTa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484233	8484233	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	43	374	0	ENST00000356435.5:c.3299C>A	p.Thr1100Lys	p.T1100K	ENST00000356435		1100	aCg/aAg					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625090	69625090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	31	177	0	ENST00000334134.2:c.703G>A	p.Glu235Lys	p.E235K	ENST00000334134	NM_005247.2	235	Gag/Aag					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435598	110435598	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	17	98	0	ENST00000375856.3:c.2803G>T	p.Ala935Ser	p.A935S	ENST00000375856	NM_003749.2	935	Gcg/Tcg					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3831212	3831212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	37	316	2	ENST00000262367.5:c.1669G>A	p.Ala557Thr	p.A557T	ENST00000262367	NM_004380.2	557	Gcc/Acc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76778857	76778857	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			717	39	427	0	ENST00000373344.5:c.6722T>A	p.Leu2241His	p.L2241H	ENST00000373344	NM_000489.3	2241	cTt/cAt					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100613424	100613424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	62	231	0	ENST00000308731.7:c.976G>T	p.Asp326Tyr	p.D326Y	ENST00000308731	NM_000061.2	326	Gac/Tac					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100615625	100615625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147036606		P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			690	105	465	0	ENST00000308731.7:c.707G>A	p.Arg236Gln	p.R236Q	ENST00000308731	NM_000061.2	236	cGg/cAg					NEWRECORD																																																																									
SH2D1A	0	MSKCC	GRCh37	X	123499637	123499637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			805	57	350	0	ENST00000371139.4:c.164G>T	p.Arg55Leu	p.R55L	ENST00000371139	NM_001114937.2	55	cGa/cTa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057924	27057924	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	40	304	0	ENST00000324856.7:c.1636delC	p.Gln546ArgfsTer73	p.Q546Rfs*73	ENST00000324856	NM_006015.4	544	caC/ca					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546697	9546697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	47	319	0	ENST00000353224.5:c.1325del	p.Pro442GlnfsTer36	p.P442Qfs*36	ENST00000353224	NM_177990.2	442	cCa/ca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1153	27	592	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	168	374	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52678727	52678727	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002937-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	140	368	1	ENST00000394830.3:c.892C>T	p.Arg298Ter	p.R298*	ENST00000394830	NM_018313.4	298	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574010	7574010	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001438-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			585	31	411	0	ENST00000269305.4:c.1017del	p.Met340CysfsTer5	p.M340Cfs*5	ENST00000269305	NM_001126112.2	339	gaG/ga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			152	42	69	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			279	77	190	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68849521	68849521	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			475	194	456	0	ENST00000261769.5:c.1424delT	p.Val475GlyfsTer6	p.V475Gfs*6	ENST00000261769	NM_004360.3	475	gTg/gg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16261208	16261208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			278	64	136	0	ENST00000375759.3:c.8473G>A	p.Glu2825Lys	p.E2825K	ENST00000375759	NM_015001.2	2825	Gaa/Aaa					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551777	150551777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			244	41	80	0	ENST00000369026.2:c.230C>T	p.Ala77Val	p.A77V	ENST00000369026	NM_021960.4	77	gCg/gTg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143134	30143134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			550	108	395	0	ENST00000389048.3:c.392C>T	p.Ser131Phe	p.S131F	ENST00000389048	NM_004304.4	131	tCc/tTc					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			874	67	310	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163020	47163020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			790	52	379	0	ENST00000409792.3:c.3106G>A	p.Glu1036Lys	p.E1036K	ENST00000409792	NM_014159.6	1036	Gaa/Aaa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163634	47163634	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			592	62	235	0	ENST00000409792.3:c.2492C>G	p.Ser831Ter	p.S831*	ENST00000409792	NM_014159.6	831	tCa/tGa					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71064734	71064734	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			574	49	214	0	ENST00000318789.4:c.940G>C	p.Glu314Gln	p.E314Q	ENST00000318789	NM_032682.5	314	Gaa/Caa					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138431061	138431061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			683	100	308	0	ENST00000289153.2:c.1388C>T	p.Ser463Phe	p.S463F	ENST00000289153	NM_006219.2	463	tCt/tTt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048764	180048764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			564	30	331	0	ENST00000261937.6:c.1798G>A	p.Asp600Asn	p.D600N	ENST00000261937	NM_182925.4	600	Gat/Aat					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128852161	128852161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			679	132	477	2	ENST00000249373.3:c.2233C>T	p.Gln745Ter	p.Q745*	ENST00000249373	NM_005631.4	745	Cag/Tag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108199841	108199841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			520	41	219	0	ENST00000278616.4:c.7183G>A	p.Asp2395Asn	p.D2395N	ENST00000278616	NM_000051.3	2395	Gat/Aat					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420901	49420901	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			674	108	285	0	ENST00000301067.7:c.14848C>G	p.Leu4950Val	p.L4950V	ENST00000301067	NM_003482.3	4950	Ctg/Gtg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49432504	49432504	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			802	170	364	0	ENST00000301067.7:c.8635G>C	p.Glu2879Gln	p.E2879Q	ENST00000301067	NM_003482.3	2879	Gag/Cag					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28913332	28913332	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			716	140	490	0	ENST00000282397.4:c.2461G>T	p.Glu821Ter	p.E821*	ENST00000282397	NM_002019.4	821	Gag/Tag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32972634	32972634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			534	138	285	0	ENST00000380152.3:c.9984C>G	p.Phe3328Leu	p.F3328L	ENST00000380152		3328	ttC/ttG					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110437379	110437379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			176	27	82	0	ENST00000375856.3:c.1022G>A	p.Arg341His	p.R341H	ENST00000375856	NM_003749.2	341	cGc/cAc					NEWRECORD																																																																									
PDPK1	0	MSKCC	GRCh37	16	2645847	2645847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			538	131	281	0	ENST00000342085.4:c.1397G>A	p.Arg466Gln	p.R466Q	ENST00000342085	NM_002613.4	466	cGg/cAg					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23641161	23641161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			584	36	317	0	ENST00000261584.4:c.2314G>A	p.Asp772Asn	p.D772N	ENST00000261584	NM_024675.3	772	Gat/Aat					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70118870	70118870	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			449	136	372	0	ENST00000245479.2:c.442G>T	p.Glu148Ter	p.E148*	ENST00000245479	NM_000346.3	148	Gag/Tag					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			501	76	246	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			547	40	301	0	ENST00000342988.3:c.1572G>C	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgC					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922906	39922906	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs140897453		P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			758	226	555	0	ENST00000378444.4:c.3802A>G	p.Arg1268Gly	p.R1268G	ENST00000378444	NM_001123385.1	1268	Aga/Gga					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16261468	16261468	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000167-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			458	94	214	0	ENST00000375759.3:c.8733delG	p.Lys2911AsnfsTer19	p.K2911Nfs*19	ENST00000375759	NM_015001.2	2911	aaG/aa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	113	187	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	370	304	0	ENST00000269305.4:c.695T>A	p.Ile232Asn	p.I232N	ENST00000269305	NM_001126112.2	232	aTc/aAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40730859	40730859	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	959	245	0	ENST00000373198.4:c.3676C>T	p.Arg1226Ter	p.R1226*	ENST00000373198	NM_133170.3	1226	Cga/Tga					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134920469	134920469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1175	146	427	1	ENST00000398015.3:c.2284G>A	p.Asp762Asn	p.D762N	ENST00000398015	NM_004441.4	762	Gac/Aac					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32187537	32187537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	74	181	0	ENST00000375023.3:c.1342C>G	p.His448Asp	p.H448D	ENST00000375023	NM_004557.3	448	Cat/Gat					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372206	55372206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	70	191	0	ENST00000297316.4:c.896C>T	p.Ala299Val	p.A299V	ENST00000297316	NM_022454.3	299	gCg/gTg					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435802	110435802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	19	76	0	ENST00000375856.3:c.2599C>T	p.Pro867Ser	p.P867S	ENST00000375856	NM_003749.2	867	Cct/Tct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	308	265	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41419834	41419834	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0000178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1033	112	303	0	ENST00000373198.4:c.486+1G>C		p.X162_splice	ENST00000373198	NM_133170.3	162						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			27	226	363	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46244952	46244952	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			28	255	556	2	ENST00000334344.6:c.3046C>T	p.Gln1016Ter	p.Q1016*	ENST00000334344	NM_152641.2	1016	Caa/Taa					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	343528	343528	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			28	241	512	0	ENST00000262320.3:c.2146G>T	p.Glu716Ter	p.E716*	ENST00000262320	NM_003502.3	716	Gag/Tag					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133750377	133750377	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000629-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			461	448	567	0	ENST00000318560.5:c.1208T>C	p.Ile403Thr	p.I403T	ENST00000318560	NM_005157.4	403	aTc/aCc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			991	317	694	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602290	10602290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	335	487	0	ENST00000171111.5:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000171111	NM_203500.1	430	Ggc/Tgc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89480327	89480327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1007	124	702	0	ENST00000336596.2:c.2164C>A	p.Gln722Lys	p.Q722K	ENST00000336596	NM_005233.5	722	Cag/Aag					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66230848	66230848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1141	122	718	0	ENST00000273854.3:c.2123C>T	p.Thr708Ile	p.T708I	ENST00000273854	NM_004439.5	708	aCc/aTc					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149439396	149439396	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	109	537	0	ENST00000286301.3:c.1999T>C	p.Cys667Arg	p.C667R	ENST00000286301	NM_005211.3	667	Tgc/Cgc					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91328199	91328199	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			984	333	590	0	ENST00000355112.3:c.2711T>A	p.Met904Lys	p.M904K	ENST00000355112	NM_000057.2	904	aTg/aAg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5240279	5240279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	333	590	0	ENST00000357368.4:c.1635G>T	p.Trp545Cys	p.W545C	ENST00000357368	NM_002850.3	545	tgG/tgT					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29684105	29684106	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			980	119	548	0	ENST00000358273.4:c.7867_7868del	p.Leu2623SerfsTer10	p.L2623Sfs*10	ENST00000358273	NM_001042492.2	2622	gtTCta/gtta					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1219350	1219363	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCATGCAGGAAA	TGGCATGCAGGAAA	-			P-0002153-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	293	508	0	ENST00000326873.7:c.404_417del	p.Gly135AlafsTer23	p.G135Afs*23	ENST00000326873	NM_000455.4	134	tgTGGCATGCAGGAAAtg/tgtg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0003162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	545	388	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544703	65544703	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	303	345	0	ENST00000358664.4:c.223C>T	p.Arg75Ter	p.R75*	ENST00000358664	NM_002382.4	75	Cga/Tga					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118166103	118166103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	336	375	0	ENST00000369448.3:c.613C>T	p.His205Tyr	p.H205Y	ENST00000369448	NM_017709.3	205	Cac/Tac					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10244910	10244910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	561	380	1	ENST00000340748.4:c.4799C>T	p.Ala1600Val	p.A1600V	ENST00000340748		1600	gCc/gTc					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42840334	42840334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000633-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			639	44	386	0	ENST00000398585.3:c.1414G>A	p.Asp472Asn	p.D472N	ENST00000398585	NM_001135099.1	472	Gat/Aat					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30057302	30057302	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000633-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	162	412	0	ENST00000338641.4:c.784C>T	p.Arg262Ter	p.R262*	ENST00000338641	NM_000268.3	262	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579440	7579440	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000633-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	150	310	0	ENST00000269305.4:c.247delG	p.Ala83ArgfsTer40	p.A83Rfs*40	ENST00000269305	NM_001126112.2	83	Gcg/cg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29754956	29754956	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	124	295	0	ENST00000389048.3:c.979G>C	p.Ala327Pro	p.A327P	ENST00000389048	NM_004304.4	327	Gct/Cct					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	153	607	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18278049	18278049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	136	511	0	ENST00000222254.8:c.1669G>T	p.Asp557Tyr	p.D557Y	ENST00000222254	NM_005027.3	557	Gac/Tac					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425080	49425086	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCCCG	TTGCCCG	-			P-0004508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	175	621	0	ENST00000301067.7:c.13402_13408del	p.Ala4469MetfsTer48	p.A4469Mfs*48	ENST00000301067	NM_003482.3	4468	CGGGCAAag/ag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425091	49425103	+	protein_altering_variant	In_Frame_Del	DEL	AGCTTCTGCAAGA	AGCTTCTGCAAGA	T			P-0004508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	169	604	0	ENST00000301067.7:c.13385_13397delinsA	p.Leu4462_Leu4466delinsGln	p.L4462_L4466delinsQ	ENST00000301067	NM_003482.3	4462	cTCTTGCAGAAGCTa/cAa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	93	244	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0001442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	219	342	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0001442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	203	335	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242511	55242511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001442-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			343	114	273	0	ENST00000275493.2:c.2281G>T	p.Asp761Tyr	p.D761Y	ENST00000275493	NM_005228.3	761	Gat/Tat					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80646057	80646057	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	16	77	0	ENST00000286548.4:c.95A>G	p.Asp32Gly	p.D32G	ENST00000286548	NM_002072.3	32	gAc/gGc					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69233062	69233062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3479	440	184	0	ENST00000462284.1:c.927G>C	p.Trp309Cys	p.W309C	ENST00000462284	NM_002392.5	309	tgG/tgC					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55564590	55564590	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	110	346	0	ENST00000288135.5:c.478T>G	p.Leu160Val	p.L160V	ENST00000288135	NM_000222.2	160	Ttg/Gtg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2138286	2138286	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	276	362	0	ENST00000219476.3:c.5219G>A	p.Trp1740Ter	p.W1740*	ENST00000219476	NM_000548.3	1740	tGg/tAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0001983-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	512	293	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	88	280	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	169	268	1	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	66	216	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099030	27099030	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	101	287	0	ENST00000324856.7:c.3446C>G	p.Ser1149Ter	p.S1149*	ENST00000324856	NM_006015.4	1149	tCa/tGa					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1803147	1803147	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	63	228	0	ENST00000260795.2:c.499C>G	p.Pro167Ala	p.P167A	ENST00000260795		167	Ccg/Gcg					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157505550	157505550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	54	156	0	ENST00000346085.5:c.3531G>T	p.Lys1177Asn	p.K1177N	ENST00000346085	NM_020732.3	1177	aaG/aaT					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	135	419	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53227760	53227760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	98	429	0	ENST00000375401.3:c.2428G>A	p.Glu810Lys	p.E810K	ENST00000375401	NM_004187.3	810	Gag/Aag					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76855903	76855903	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	105	339	0	ENST00000373344.5:c.5697G>C	p.Lys1899Asn	p.K1899N	ENST00000373344	NM_000489.3	1899	aaG/aaC					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47028833	47028851	+	frameshift_variant	Frame_Shift_Del	DEL	GCGAGTATGGCAGCCAGGA	GCGAGTATGGCAGCCAGGA	-			P-0003213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	156	329	0	ENST00000329236.7:c.138_156del	p.Glu47AlafsTer32	p.E47Afs*32	ENST00000329236	NM_001204466.1	46	cGCGAGTATGGCAGCCAGGAg/cg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175324	112175324	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	39	342	0	ENST00000257430.4:c.4033G>T	p.Glu1345Ter	p.E1345*	ENST00000257430	NM_000038.5	1345	Gaa/Taa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467635	66467635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	46	439	0	ENST00000273854.3:c.634C>A	p.Leu212Ile	p.L212I	ENST00000273854	NM_004439.5	212	Ctt/Att					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173803	112173803	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	124	401	0	ENST00000257430.4:c.2512A>T	p.Arg838Ter	p.R838*	ENST00000257430	NM_000038.5	838	Aga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175336	112175336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002251-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	37	337	0	ENST00000257430.4:c.4045C>T	p.His1349Tyr	p.H1349Y	ENST00000257430	NM_000038.5	1349	Cac/Tac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000429-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			633	44	246	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8485993	8485993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000429-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			76	14	307	0	ENST00000356435.5:c.2824C>A	p.Pro942Thr	p.P942T	ENST00000356435		942	Cct/Act					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412289	139412289	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000641-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	102	401	0	ENST00000277541.6:c.1356C>A	p.Asp452Glu	p.D452E	ENST00000277541	NM_017617.3	452	gaC/gaA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001285-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	29	331	0	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65307212	65307212	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150021823		P-0002149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	54	337	0	ENST00000342505.4:c.2476C>T	p.Arg826Cys	p.R826C	ENST00000342505	NM_002227.2	826	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0002149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	199	335	0	ENST00000269305.4:c.994-1G>T		p.X332_splice	ENST00000269305	NM_001126112.2	332						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	108	174	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
CDKN2C	0	MSKCC	GRCh37	1	51436170	51436170	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0003754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			15	133	89	0	ENST00000262662.1:c.129+1G>A		p.X43_splice	ENST00000262662		43						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29661972	29661972	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	116	220	0	ENST00000358273.4:c.5929A>T	p.Lys1977Ter	p.K1977*	ENST00000358273	NM_001042492.2	1977	Aag/Tag					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8521543	8521543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	72	208	0	ENST00000356435.5:c.695G>A	p.Arg232His	p.R232H	ENST00000356435		232	cGc/cAc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118352489	118352489	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	54	269	0	ENST00000534358.1:c.3694A>T	p.Ser1232Cys	p.S1232C	ENST00000534358	NM_005933.3	1232	Agt/Tgt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29490328	29490328	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	115	308	0	ENST00000358273.4:c.413C>G	p.Ala138Gly	p.A138G	ENST00000358273	NM_001042492.2	138	gCc/gGc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40735446	40735446	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	63	388	0	ENST00000373198.4:c.3427G>T	p.Val1143Phe	p.V1143F	ENST00000373198	NM_133170.3	1143	Gtc/Ttc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000829-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	136	210	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190717379	190717379	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0000829-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			684	193	282	0	ENST00000441310.2:c.700-2A>G		p.X234_splice	ENST00000441310	NM_000534.4	234						NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52595873	52595873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000829-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1160	396	466	0	ENST00000394830.3:c.4042C>T	p.Gln1348Ter	p.Q1348*	ENST00000394830	NM_018313.4	1348	Caa/Taa					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148515169	148515169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000829-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1547	239	378	0	ENST00000320356.2:c.1040G>A	p.Arg347Gln	p.R347Q	ENST00000320356	NM_004456.4	347	cGg/cAg					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56495119	56495119	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000829-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1325	327	474	0	ENST00000267101.3:c.3476A>T	p.Tyr1159Phe	p.Y1159F	ENST00000267101	NM_001982.3	1159	tAt/tTt					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30321626	30321626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000829-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			856	345	300	0	ENST00000322652.5:c.1481G>T	p.Cys494Phe	p.C494F	ENST00000322652	NM_015355.2	494	tGt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			250	336	624	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0002945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			687	316	1088	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0002945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	193	314	1	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	565	751	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56178653	56178653	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			617	179	640	0	ENST00000399503.3:c.3626A>T	p.Gln1209Leu	p.Q1209L	ENST00000399503	NM_005921.1	1209	cAg/cTg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140439695	140439695	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002945-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	86	456	1	ENST00000288602.6:c.2044C>T	p.Arg682Trp	p.R682W	ENST00000288602	NM_004333.4	682	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000058-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	348	357	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865199	57865199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	100	515	0	ENST00000228682.2:c.2676G>T	p.Gln892His	p.Q892H	ENST00000228682	NM_005269.2	892	caG/caT					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7979590	7979613	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGTCATAGGTGAGCTCCGACA	GGCTGTCATAGGTGAGCTCCGACA	CG			P-0004261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	67	277	0	ENST00000319144.4:c.1412_1435delinsCG	p.Leu471ProfsTer36	p.L471Pfs*36	ENST00000319144	NM_001139.2	471	cTGTCGGAGCTCACCTATGACAGCCtc/cCGtc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579311	7579312	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0004261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	91	146	0	ENST00000269305.4:c.375_375+1delinsTT		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48023122	48023122	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	201	414	0	ENST00000234420.5:c.547T>A	p.Leu183Ile	p.L183I	ENST00000234420	NM_000179.2	183	Tta/Ata					NEWRECORD																																																																									
HOXB13	0	MSKCC	GRCh37	17	46805633	46805633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	350	417	1	ENST00000290295.7:c.323C>A	p.Ala108Glu	p.A108E	ENST00000290295	NM_006361.5	108	gCg/gAg					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99193554	99193554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	181	216	0	ENST00000074304.5:c.2749del	p.Glu917SerfsTer27	p.E917Sfs*27	ENST00000074304	NM_001134224.1	917	Gag/ag					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43608994	43609008	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCCCTCAGGGGGC	CTGCCCTCAGGGGGC	-			P-0003750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	168	377	0	ENST00000355710.3:c.1760-10_1764del		p.X587_splice	ENST00000355710	NM_020975.4	587						NEWRECORD																																																																									
DNAJB1	0	MSKCC	GRCh37	19	14629033	14629035	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0003750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	103	348	0	ENST00000254322.2:c.127_129del	p.Glu43del	p.E43del	ENST00000254322	NM_006145.1	43	GAG/-					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0001820-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	13	519	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001820-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			594	21	269	0	ENST00000371953.3:c.389G>C	p.Arg130Pro	p.R130P	ENST00000371953	NM_000314.4	130	cGa/cCa					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94203775	94203775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001898-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	49	350	0	ENST00000323929.3:c.879G>T	p.Lys293Asn	p.K293N	ENST00000323929	NM_005591.3	293	aaG/aaT					NEWRECORD																																																																									
SH2D1A	0	MSKCC	GRCh37	X	123499637	123499637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001898-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	98	498	0	ENST00000371139.4:c.164G>A	p.Arg55Gln	p.R55Q	ENST00000371139	NM_001114937.2	55	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	218	230	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0001105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	185	265	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178922364	178922364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			666	254	269	0	ENST00000263967.3:c.1133G>T	p.Cys378Phe	p.C378F	ENST00000263967	NM_006218.2	378	tGt/tTt					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81358987	81358987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1263	110	458	0	ENST00000222390.5:c.974C>A	p.Pro325Gln	p.P325Q	ENST00000222390	NM_000601.4	325	cCa/cAa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41566439	41566439	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			755	205	355	0	ENST00000263253.7:c.4316C>G	p.Pro1439Arg	p.P1439R	ENST00000263253	NM_001429.3	1439	cCa/cGa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27092734	27092734	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			723	271	353	0	ENST00000324856.7:c.2756del	p.Asn919IlefsTer5	p.N919Ifs*5	ENST00000324856	NM_006015.4	919	Aat/at					NEWRECORD																																																																									
BBC3	0	MSKCC	GRCh37	19	47729871	47729871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001105-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			872	208	354	0	ENST00000449228.1:c.518del	p.Gly173AlafsTer56	p.G173Afs*56	ENST00000449228	NM_001127240.2	173	gGc/gc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	338	379	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	185	232	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66270189	66270189	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	229	322	0	ENST00000273854.3:c.1693G>T	p.Ala565Ser	p.A565S	ENST00000273854	NM_004439.5	565	Gca/Tca					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187446885	187446885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	146	331	0	ENST00000232014.4:c.1308G>T	p.Glu436Asp	p.E436D	ENST00000232014	NM_001130845.1	436	gaG/gaT					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176722039	176722039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	105	285	1	ENST00000439151.2:c.7670G>A	p.Gly2557Glu	p.G2557E	ENST00000439151	NM_022455.4	2557	gGa/gAa					NEWRECORD																																																																									
HIST1H3J	0	MSKCC	GRCh37	6	27858446	27858446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	134	507	0	ENST00000359303.2:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000359303	NM_003535.2	42	tAc/tGc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118343997	118343997	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	124	344	1	ENST00000534358.1:c.2123A>C	p.His708Pro	p.H708P	ENST00000534358	NM_005933.3	708	cAc/cCc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115120684	115120684	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	144	438	0	ENST00000257566.3:c.322G>T	p.Glu108Ter	p.E108*	ENST00000257566	NM_016569.3	108	Gag/Tag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72821290	72821290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	157	511	0	ENST00000268489.5:c.10885C>G	p.Pro3629Ala	p.P3629A	ENST00000268489	NM_006885.3	3629	Ccc/Gcc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72821409	72821409	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	111	490	0	ENST00000268489.5:c.10766C>G	p.Ser3589Cys	p.S3589C	ENST00000268489	NM_006885.3	3589	tCt/tGt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	239	345	0	ENST00000171111.5:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000171111	NM_203500.1	413	cGt/cTt					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17954190	17954190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	301	377	0	ENST00000458235.1:c.419A>G	p.Gln140Arg	p.Q140R	ENST00000458235	NM_000215.3	140	cAg/cGg					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100617565	100617565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	156	414	0	ENST00000308731.7:c.504G>C	p.Leu168Phe	p.L168F	ENST00000308731	NM_000061.2	168	ttG/ttC					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15271639	15271649	+	frameshift_variant	Frame_Shift_Del	DEL	GACCAGTCTGA	GACCAGTCTGA	-			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	206	395	0	ENST00000263388.2:c.6790_6800del	p.Ser2264ArgfsTer5	p.S2264Rfs*5	ENST00000263388	NM_000435.2	2264	TCAGACTGGTCc/c					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81355311	81355311	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	230	312	0	ENST00000222390.5:c.1063del	p.Arg355GlufsTer56	p.R355Efs*56	ENST00000222390	NM_000601.4	355	Cga/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	15	199	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25972735	25972735	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	10	400	0	ENST00000435504.4:c.1690G>C	p.Glu564Gln	p.E564Q	ENST00000435504		564	Gaa/Caa					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29498313	29498313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	12	349	0	ENST00000389048.3:c.1867G>A	p.Val623Met	p.V623M	ENST00000389048	NM_004304.4	623	Gtg/Atg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52662984	52662984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	12	371	0	ENST00000394830.3:c.1369G>A	p.Glu457Lys	p.E457K	ENST00000394830	NM_018313.4	457	Gaa/Aaa					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138433450	138433450	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	14	366	0	ENST00000289153.2:c.1162G>C	p.Asp388His	p.D388H	ENST00000289153	NM_006219.2	388	Gat/Cat					NEWRECORD																																																																									
EIF4E	0	MSKCC	GRCh37	4	99812401	99812401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	12	610	0	ENST00000280892.6:c.268G>A	p.Glu90Lys	p.E90K	ENST00000280892	NM_001130678.1	90	Gaa/Aaa					NEWRECORD																																																																									
EIF4E	0	MSKCC	GRCh37	4	99812458	99812458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	10	445	0	ENST00000280892.6:c.211G>T	p.Asp71Tyr	p.D71Y	ENST00000280892	NM_001130678.1	71	Gat/Tat					NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36652020	36652020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	25	295	0	ENST00000244741.5:c.142C>T	p.Arg48Ter	p.R48*	ENST00000244741	NM_000389.4	48	Cga/Tga					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6026604	6026604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	10	621	0	ENST00000265849.7:c.1792C>G	p.Gln598Glu	p.Q598E	ENST00000265849	NM_000535.5	598	Cag/Gag					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339968	116339968	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	18	330	0	ENST00000397752.3:c.830G>C	p.Arg277Thr	p.R277T	ENST00000397752	NM_000245.2	277	aGa/aCa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115117759	115117759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	12	383	0	ENST00000257566.3:c.676G>A	p.Asp226Asn	p.D226N	ENST00000257566	NM_016569.3	226	Gat/Aat					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26970454	26970454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	13	352	0	ENST00000381527.3:c.823G>C	p.Glu275Gln	p.E275Q	ENST00000381527	NM_001260.1	275	Gaa/Caa					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14041527	14041527	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	13	258	0	ENST00000311895.7:c.2074C>T	p.Arg692Ter	p.R692*	ENST00000311895	NM_005236.2	692	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	8	208	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41243774	41243774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	14	390	0	ENST00000357654.3:c.3774G>C	p.Glu1258Asp	p.E1258D	ENST00000357654	NM_007294.3	1258	gaG/gaC					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41245603	41245603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	12	392	0	ENST00000357654.3:c.1945G>C	p.Glu649Gln	p.E649Q	ENST00000357654	NM_007294.3	649	Gag/Cag					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76909655	76909655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	38	570	0	ENST00000373344.5:c.4250G>A	p.Arg1417Gln	p.R1417Q	ENST00000373344	NM_000489.3	1417	cGg/cAg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023749	27023755	+	frameshift_variant	Frame_Shift_Del	DEL	AACTCCC	AACTCCC	-			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	17	255	0	ENST00000324856.7:c.855_861del	p.Thr286SerfsTer75	p.T286Sfs*75	ENST00000324856	NM_006015.4	285	ggAACTCCC/gg					NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36652040	36652060	+	inframe_deletion	In_Frame_Del	DEL	CACCGAGACACCACTGGAGGG	CACCGAGACACCACTGGAGGG	-			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	20	332	0	ENST00000244741.5:c.162_182del	p.Thr55_Gly61del	p.T55_G61del	ENST00000244741	NM_000389.4	54	gtCACCGAGACACCACTGGAGGGt/gtt					NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48954327	48954328	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0003844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	27	298	0	ENST00000267163.4:c.1450_1451del	p.Met484ValfsTer8	p.M484Vfs*8	ENST00000267163	NM_000321.2	483	cAT/c					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	255	558	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	405	794	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15292438	15292438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	88	627	1	ENST00000263388.2:c.2741C>T	p.Pro914Leu	p.P914L	ENST00000263388	NM_000435.2	914	cCa/cTa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178414	112178414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1099	97	635	0	ENST00000257430.4:c.7123C>T	p.Gln2375Ter	p.Q2375*	ENST00000257430	NM_000038.5	2375	Caa/Taa					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176618933	176618933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1201	135	847	0	ENST00000439151.2:c.976C>G	p.Leu326Val	p.L326V	ENST00000439151	NM_022455.4	326	Ctc/Gtc					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056132	26056132	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			897	128	646	0	ENST00000343677.2:c.525G>C	p.Lys175Asn	p.K175N	ENST00000343677	NM_005319.3	175	aaG/aaC					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2983974	2983974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			809	89	1099	0	ENST00000396946.4:c.556G>C	p.Glu186Gln	p.E186Q	ENST00000396946	NM_032415.4	186	Gag/Cag					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115111972	115111972	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	141	246	0	ENST00000257566.3:c.1768C>T	p.Gln590Ter	p.Q590*	ENST00000257566	NM_016569.3	590	Cag/Tag					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133250217	133250217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			840	161	753	1	ENST00000320574.5:c.1303G>A	p.Asp435Asn	p.D435N	ENST00000320574	NM_006231.2	435	Gat/Aat					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20148708	20148708	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			985	101	631	0	ENST00000379607.5:c.355G>A	p.Asp119Asn	p.D119N	ENST00000379607	NM_001412.3	119	Gat/Aat					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	86	227	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001322-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1521	100	430	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001322-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			795	64	322	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087458	27087458	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001322-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1270	73	541	0	ENST00000324856.7:c.2032C>T	p.Gln678Ter	p.Q678*	ENST00000324856	NM_006015.4	678	Cag/Tag					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001322-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			968	108	448	1	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0000513-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	119	592	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151845196	151845196	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000513-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	113	422	0	ENST00000262189.6:c.13816G>C	p.Asp4606His	p.D4606H	ENST00000262189	NM_170606.2	4606	Gat/Cat					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12006442	12006442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000513-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			656	109	589	1	ENST00000396373.4:c.410G>T	p.Gly137Val	p.G137V	ENST00000396373	NM_001987.4	137	gGa/gTa					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28636168	28636168	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000513-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	43	393	0	ENST00000241453.7:c.204A>C	p.Arg68Ser	p.R68S	ENST00000241453	NM_004119.2	68	agA/agC					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32953916	32953916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000513-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	141	392	0	ENST00000380152.3:c.8983G>A	p.Asp2995Asn	p.D2995N	ENST00000380152		2995	Gat/Aat					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73343051	73343051	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000513-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	51	252	0	ENST00000377767.4:c.1756-1G>T		p.X586_splice	ENST00000377767	NM_014953.3	586						NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15298691	15298691	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0000513-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	18	342	0	ENST00000263388.2:c.1606+1G>C		p.X536_splice	ENST00000263388	NM_000435.2	536						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	213	425	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370841	55370841	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	103	196	0	ENST00000297316.4:c.143C>T	p.Ala48Val	p.A48V	ENST00000297316	NM_022454.3	48	gCg/gTg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	89	307	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38952412	38952412	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	235	399	0	ENST00000357387.3:c.3013C>A	p.Pro1005Thr	p.P1005T	ENST00000357387	NM_152756.3	1005	Cca/Aca					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114911483	114911483	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	150	206	0	ENST00000543371.1:c.1002-1G>C		p.X334_splice	ENST00000543371	NM_001198531.1	334						NEWRECORD																																																																									
FGF4	0	MSKCC	GRCh37	11	69589527	69589527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	72	84	0	ENST00000168712.1:c.326C>T	p.Ala109Val	p.A109V	ENST00000168712	NM_002007.2	109	gCg/gTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0003789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	139	269	0	ENST00000269305.4:c.378C>A	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taA					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0002161-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			852	107	578	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002161-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	286	548	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048764	180048764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002161-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	34	545	0	ENST00000261937.6:c.1798G>A	p.Asp600Asn	p.D600N	ENST00000261937	NM_182925.4	600	Gat/Aat					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134920396	134920396	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002161-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	48	642	0	ENST00000398015.3:c.2211G>C	p.Glu737Asp	p.E737D	ENST00000398015	NM_004441.4	737	gaG/gaC					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50468063	50468063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002161-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	79	429	1	ENST00000331340.3:c.1298G>A	p.Arg433His	p.R433H	ENST00000331340	NM_006060.4	433	cGc/cAc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49421645	49421645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			503	364	635	0	ENST00000301067.7:c.14584G>A	p.Ala4862Thr	p.A4862T	ENST00000301067	NM_003482.3	4862	Gca/Aca					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41727821	41727821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			465	302	741	0	ENST00000301178.4:c.446C>A	p.Thr149Asn	p.T149N	ENST00000301178	NM_021913.4	149	aCt/aAt					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			69	406	372	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16256699	16256727	+	frameshift_variant	Frame_Shift_Del	DEL	GATATGGCCAAAATAAAACTATCTGTCTT	GATATGGCCAAAATAAAACTATCTGTCTT	-			P-0000441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			193	85	417	0	ENST00000375759.3:c.3966_3994delTATGGCCAAAATAAAACTATCTGTCTTGA	p.Asp1322GlufsTer3	p.D1322Efs*3	ENST00000375759	NM_015001.2	1322	GATATGGCCAAAATAAAACTATCTGTCTTg/g					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32929073	32929073	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			482	373	589	0	ENST00000380152.3:c.7085delT	p.Leu2362CysfsTer5	p.L2362Cfs*5	ENST00000380152		2361	caT/ca					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	396209	396234	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGCAGCTTCTGAGGGAGTCTTCCG	GGAGCAGCTTCTGAGGGAGTCTTCCG	-			P-0000441-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			855	75	474	0	ENST00000262320.3:c.792_817delCGGAAGACTCCCTCAGAAGCTGCTCC	p.Arg266AspfsTer10	p.R266Dfs*10	ENST00000262320	NM_003502.3	264	ccCGGAAGACTCCCTCAGAAGCTGCTCCtg/cctg					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65312353	65312353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			578	151	372	2	ENST00000342505.4:c.1966G>A	p.Val656Ile	p.V656I	ENST00000342505	NM_002227.2	656	Gtc/Atc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	470	460	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25982371	25982371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	221	287	0	ENST00000435504.4:c.919C>T	p.Leu307Phe	p.L307F	ENST00000435504		307	Ctc/Ttc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29451792	29451792	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	259	370	0	ENST00000389048.3:c.2773G>T	p.Gly925Ter	p.G925*	ENST00000389048	NM_004304.4	925	Gga/Tga					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435363	110435363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002984-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			58	56	137	0	ENST00000375856.3:c.3038C>T	p.Pro1013Leu	p.P1013L	ENST00000375856	NM_003749.2	1013	cCg/cTg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651282	52651282	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	195	214	0	ENST00000394830.3:c.1814C>T	p.Ser605Phe	p.S605F	ENST00000394830	NM_018313.4	605	tCc/tTc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651430	52651430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	240	357	0	ENST00000394830.3:c.1666C>T	p.Pro556Ser	p.P556S	ENST00000394830	NM_018313.4	556	Cct/Tct					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142272163	142272163	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	283	223	0	ENST00000350721.4:c.2711C>G	p.Ser904Cys	p.S904C	ENST00000350721	NM_001184.3	904	tCt/tGt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8486037	8486037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	149	258	0	ENST00000356435.5:c.2780C>T	p.Ser927Leu	p.S927L	ENST00000356435		927	tCa/tTa					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69633620	69633620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			45	16	17	0	ENST00000334134.2:c.82G>C	p.Asp28His	p.D28H	ENST00000334134	NM_005247.2	28	Gat/Cat					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118342841	118342841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	101	168	0	ENST00000534358.1:c.967G>C	p.Glu323Gln	p.E323Q	ENST00000534358	NM_005933.3	323	Gaa/Caa					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121434409	121434409	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			666	98	254	0	ENST00000257555.6:c.1173G>C	p.Gln391His	p.Q391H	ENST00000257555		391	caG/caC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577567	7577567	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	118	124	0	ENST00000269305.4:c.714T>G	p.Cys238Trp	p.C238W	ENST00000269305	NM_001126112.2	238	tgT/tgG					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602923	10602923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000676-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	160	179	0	ENST00000171111.5:c.655G>A	p.Glu219Lys	p.E219K	ENST00000171111	NM_203500.1	219	Gag/Aag					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000360-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	198	260	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	44	439	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52443609	52443620	+	inframe_deletion	In_Frame_Del	DEL	TGCACCCCCTTG	TGCACCCCCTTG	-			P-0002532-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	69	324	1	ENST00000460680.1:c.72_83del	p.Lys25_Gln28del	p.K25_Q28del	ENST00000460680	NM_004656.3	24	gtCAAGGGGGTGCAa/gta					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0002072-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	164	510	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	149	412	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17953909	17953909	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001561-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1282	106	332	0	ENST00000458235.1:c.493del	p.Leu165TrpfsTer21	p.L165Wfs*21	ENST00000458235	NM_000215.3	165	Ctg/tg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			25	55	439	0	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	101984987	101984987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	18	220	0	ENST00000282441.5:c.434C>G	p.Thr145Ser	p.T145S	ENST00000282441	NM_001130145.2	145	aCt/aGt					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061327	38061327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	54	560	0	ENST00000250448.2:c.662C>T	p.Ser221Leu	p.S221L	ENST00000250448	NM_004496.3	221	tCg/tTg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610507	10610507	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	58	454	0	ENST00000171111.5:c.203A>G	p.Asn68Ser	p.N68S	ENST00000171111	NM_203500.1	68	aAc/aGc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39916405	39916418	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACCTGGTTCCATC	GACCTGGTTCCATC	-			P-0003503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			11	62	304	0	ENST00000378444.4:c.4585_4595+3del		p.X1529_splice	ENST00000378444	NM_001123385.1	1529						NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	123	318	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105424	27105826	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGAAGACTTGGGGAGGTCTCTCAAGTCAATAATTCTGTTCTTAGGCCACTTTTCTCCCTTAATTTATTTCCTGTTCTTTCTCTTTTTAGCTCCCAGGGTTGCTAGAGCTCCTTGTAGAATATTTCCGACGATGCCTGATTGAGATCTTTGGCATTTTAAAGGAGTATGAGGTGGGTGACCCAGGACAGAGAACGCTACTGGATCCTGGGAGGTTCAGCAAGGTGTCTAGTCCAGCTCCCATGGAGGGTGGGGAAGAAGAAGAAGAACTTCTAGGTCCTAAACTAGAAGAGGAAGAAGAAGAGGAAGTAGTTGAAAATGATGAGGAGATAGCCTTTTCAGGCAAGGACAAGCCAGCTTCAGAGAATAGTGAGGAGAAGCTGATCAGTAAGTTTGACAAGCTTC	CAGAAGACTTGGGGAGGTCTCTCAAGTCAATAATTCTGTTCTTAGGCCACTTTTCTCCCTTAATTTATTTCCTGTTCTTTCTCTTTTTAGCTCCCAGGGTTGCTAGAGCTCCTTGTAGAATATTTCCGACGATGCCTGATTGAGATCTTTGGCATTTTAAAGGAGTATGAGGTGGGTGACCCAGGACAGAGAACGCTACTGGATCCTGGGAGGTTCAGCAAGGTGTCTAGTCCAGCTCCCATGGAGGGTGGGGAAGAAGAAGAAGAACTTCTAGGTCCTAAACTAGAAGAGGAAGAAGAAGAGGAAGTAGTTGAAAATGATGAGGAGATAGCCTTTTCAGGCAAGGACAAGCCAGCTTCAGAGAATAGTGAGGAGAAGCTGATCAGTAAGTTTGACAAGCTTC	-			P-0004547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	49	106	0	ENST00000324856.7:c.5125-87_5440del		p.X1709_splice	ENST00000324856	NM_006015.4	1709						NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21970979	21970979	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs6413464		P-0002997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	78	508	0	ENST00000304494.5:c.379G>T	p.Ala127Ser	p.A127S	ENST00000304494	NM_000077.4	127	Gca/Tca					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970979	21970979	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs6413464		P-0002997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	78	508	0	ENST00000304494.5:c.379G>T	p.Ala127Ser	p.A127S	ENST00000304494	NM_000077.4	127	Gca/Tca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	103	524	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1243	339	445	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16082280	16082280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1778	170	548	0	ENST00000281043.3:c.94G>A	p.Glu32Lys	p.E32K	ENST00000281043	NM_005378.4	32	Gaa/Aaa					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16086007	16086007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			831	86	236	0	ENST00000281043.3:c.1183A>G	p.Asn395Asp	p.N395D	ENST00000281043	NM_005378.4	395	Aac/Gac					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134898819	134898819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1030	152	258	0	ENST00000398015.3:c.1877G>T	p.Gly626Val	p.G626V	ENST00000398015	NM_004441.4	626	gGa/gTa					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86659245	86659245	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	114	258	0	ENST00000274376.6:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000274376	NM_002890.2	512	Cga/Tga					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117632202	117632202	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139881304		P-0000684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	47	165	0	ENST00000368508.3:c.6214C>T	p.Arg2072Trp	p.R2072W	ENST00000368508	NM_002944.2	2072	Cgg/Tgg					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005068	150005068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			619	125	193	0	ENST00000253339.5:c.1157C>T	p.Pro386Leu	p.P386L	ENST00000253339		386	cCt/cTt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246147	46246147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			570	99	251	0	ENST00000334344.6:c.4241G>C	p.Arg1414Thr	p.R1414T	ENST00000334344	NM_152641.2	1414	aGa/aCa					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39600669	39600669	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0000684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			734	59	407	0	ENST00000262039.4:c.1484G>A	p.Trp495Ter	p.W495*	ENST00000262039	NM_002647.2	495	tGg/tAg					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30303605	30303605	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			991	214	264	0	ENST00000262643.3:c.33G>T	p.Lys11Asn	p.K11N	ENST00000262643	NM_001238.2	11	aaG/aaT					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15308383	15308383	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000684-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1536	314	465	0	ENST00000263388.2:c.125delC	p.Pro42LeufsTer194	p.P42Lfs*194	ENST00000263388	NM_000435.2	42	cCt/ct					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87570263	87570263	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	36	288	0	ENST00000277120.3:c.2003A>T	p.Gln668Leu	p.Q668L	ENST00000277120		668	cAg/cTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	603	470	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	321	471	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790038	40790038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	600	382	0	ENST00000373198.4:c.2693C>T	p.Thr898Met	p.T898M	ENST00000373198	NM_133170.3	898	aCg/aTg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	488	435	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266679	41266679	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	393	334	0	ENST00000349496.5:c.476T>C	p.Leu159Pro	p.L159P	ENST00000349496	NM_001904.3	159	cTg/cCg					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36882084	36882084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	122	389	0	ENST00000358127.4:c.929C>T	p.Thr310Met	p.T310M	ENST00000358127	NM_001280556.1	310	aCg/aTg					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59247830	59247831	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0002323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	503	615	0	ENST00000371222.2:c.912_913del	p.Gln304HisfsTer5	p.Q304Hfs*5	ENST00000371222	NM_002228.3	304	caGGtg/catg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28891659	28891659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	109	242	0	ENST00000282397.4:c.3362C>A	p.Ala1121Asp	p.A1121D	ENST00000282397	NM_002019.4	1121	gCt/gAt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5212149	5212149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	57	222	0	ENST00000357368.4:c.4882C>T	p.Arg1628Cys	p.R1628C	ENST00000357368	NM_002850.3	1628	Cgc/Tgc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045000	47045000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	46	110	0	ENST00000329236.7:c.2092C>T	p.Arg698Trp	p.R698W	ENST00000329236	NM_001204466.1	698	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577525	7577525	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001855-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	81	186	0	ENST00000269305.4:c.756delC	p.Thr253ProfsTer92	p.T253Pfs*92	ENST00000269305	NM_001126112.2	252	ctC/ct					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226552755	226552755	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	258	313	1	ENST00000366794.5:c.2606T>C	p.Phe869Ser	p.F869S	ENST00000366794	NM_001618.3	869	tTt/tCt					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056184	26056184	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201150687		P-0004312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	95	318	0	ENST00000343677.2:c.473C>T	p.Ala158Val	p.A158V	ENST00000343677	NM_005319.3	158	gCg/gTg					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138200026	138200026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	14	152	0	ENST00000237289.4:c.1444G>A	p.Gly482Ser	p.G482S	ENST00000237289	NM_001270507.1	482	Ggc/Agc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	177	236	1	ENST00000269305.4:c.428T>G	p.Val143Gly	p.V143G	ENST00000269305	NM_001126112.2	143	gTg/gGg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16075283	16075283	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	147	408	0	ENST00000268712.3:c.269A>G	p.Glu90Gly	p.E90G	ENST00000268712	NM_006311.3	90	gAa/gGa					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41763458	41763458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	111	399	0	ENST00000301178.4:c.2257G>C	p.Val753Leu	p.V753L	ENST00000301178	NM_021913.4	753	Gtg/Ctg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48947559	48947559	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	348	285	0	ENST00000267163.4:c.1147del	p.Gln383AsnfsTer3	p.Q383Nfs*3	ENST00000267163	NM_000321.2	382	atC/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577042	7577042	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	557	323	0	ENST00000269305.4:c.896del	p.Leu299ArgfsTer46	p.L299Rfs*46	ENST00000269305	NM_001126112.2	299	cTg/cg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000543-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	185	428	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25457242	25457242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147001633		P-0000543-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	10	252	2	ENST00000264709.3:c.2645G>A	p.Arg882His	p.R882H	ENST00000264709	NM_175629.2	882	cGc/cAc					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56770132	56770132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000543-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			608	83	403	0	ENST00000337432.4:c.128C>T	p.Pro43Leu	p.P43L	ENST00000337432	NM_058216.2	43	cCc/cTc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29474064	29474064	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	294	466	0	ENST00000389048.3:c.2111C>A	p.Ala704Asp	p.A704D	ENST00000389048	NM_004304.4	704	gCc/gAc					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187451442	187451442	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	205	348	0	ENST00000449623.1:c.260G>A	p.Trp87Ter	p.W87*	ENST00000449623		87	tGg/tAg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187521309	187521309	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	164	577	0	ENST00000441802.2:c.11846A>T	p.Tyr3949Phe	p.Y3949F	ENST00000441802	NM_005245.3	3949	tAt/tTt					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32187525	32187525	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	80	280	0	ENST00000375023.3:c.1354T>A	p.Cys452Ser	p.C452S	ENST00000375023	NM_004557.3	452	Tgc/Agc					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81374323	81374323	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	292	428	0	ENST00000222390.5:c.739C>G	p.Pro247Ala	p.P247A	ENST00000222390	NM_000601.4	247	Cct/Gct					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43615036	43615036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	108	489	0	ENST00000355710.3:c.2450G>A	p.Arg817His	p.R817H	ENST00000355710	NM_020975.4	817	cGc/cAc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3790512	3790512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	116	400	0	ENST00000262367.5:c.4021C>T	p.Arg1341Ter	p.R1341*	ENST00000262367	NM_004380.2	1341	Cga/Tga					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858037	9858037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			844	152	552	0	ENST00000330684.3:c.3364G>T	p.Gly1122Cys	p.G1122C	ENST00000330684	NM_001134407.1	1122	Ggt/Tgt					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23641459	23641459	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			680	410	608	0	ENST00000261584.4:c.2016A>T	p.Glu672Asp	p.E672D	ENST00000261584	NM_024675.3	672	gaA/gaT					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38512269	38512269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	123	375	0	ENST00000254066.5:c.1180C>T	p.Arg394Trp	p.R394W	ENST00000254066	NM_000964.3	394	Cgg/Tgg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1218447	1218447	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	647	471	0	ENST00000326873.7:c.322A>T	p.Lys108Ter	p.K108*	ENST00000326873	NM_000455.4	108	Aaa/Taa					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921643	39921643	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	38	400	0	ENST00000378444.4:c.4177A>T	p.Thr1393Ser	p.T1393S	ENST00000378444	NM_001123385.1	1393	Act/Tct					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	533	474	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	305	593	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180030314	180030314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			721	317	551	2	ENST00000261937.6:c.3970C>T	p.Arg1324Trp	p.R1324W	ENST00000261937	NM_182925.4	1324	Cgg/Tgg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242469	55242470	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0000348-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	1932	296	0	ENST00000275493.2:c.2239_2240delTTinsCC	p.Leu747Pro	p.L747P	ENST00000275493	NM_005228.3	747	TTa/CCa					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110250206	110250206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	268	207	0	ENST00000374672.4:c.469G>T	p.Gly157Trp	p.G157W	ENST00000374672	NM_004235.4	157	Ggg/Tgg					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12038902	12038902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			714	529	342	0	ENST00000396373.4:c.1195C>T	p.Arg399Cys	p.R399C	ENST00000396373	NM_001987.4	399	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	360	380	0	ENST00000269305.4:c.809T>C	p.Phe270Ser	p.F270S	ENST00000269305	NM_001126112.2	270	tTt/tCt					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15300105	15300105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001268-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	142	357	0	ENST00000263388.2:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000263388	NM_000435.2	391	Gat/Aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000062-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	581	262	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148523605	148523605	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000062-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			980	54	354	0	ENST00000320356.2:c.848C>T	p.Thr283Met	p.T283M	ENST00000320356	NM_004456.4	283	aCg/aTg					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69222656	69222656	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000062-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1485	328	435	0	ENST00000462284.1:c.629A>T	p.Glu210Val	p.E210V	ENST00000462284	NM_002392.5	210	gAg/gTg					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99486153	99486153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0000062-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			927	69	318	0	ENST00000268035.6:c.3459T>G	p.Asp1153Glu	p.D1153E	ENST00000268035	NM_000875.3	1153	gaT/gaG					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602303	10602303	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000062-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			807	422	409	0	ENST00000171111.5:c.1275C>G	p.Ile425Met	p.I425M	ENST00000171111	NM_203500.1	425	atC/atG					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53223386	53223386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000062-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	151	266	0	ENST00000375401.3:c.3973C>G	p.Pro1325Ala	p.P1325A	ENST00000375401	NM_004187.3	1325	Cct/Gct					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437315	52437315	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0004636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	137	193	0	ENST00000460680.1:c.1730-1G>C		p.X577_splice	ENST00000460680	NM_004656.3	577						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47142964	47142964	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	122	191	0	ENST00000409792.3:c.4999C>T	p.Gln1667Ter	p.Q1667*	ENST00000409792	NM_014159.6	1667	Cag/Tag					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158634656	158634656	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	191	296	0	ENST00000263640.3:c.530A>C	p.Asp177Ala	p.D177A	ENST00000263640	NM_001105.4	177	gAc/gCc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41556678	41556678	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	104	115	0	ENST00000263253.7:c.3623T>A	p.Ile1208Asn	p.I1208N	ENST00000263253	NM_001429.3	1208	aTc/aAc					NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55602664	55602664	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C	rs1057519713		P-0004014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	33	172	0	ENST00000288135.5:c.2485G>C	p.Ala829Pro	p.A829P	ENST00000288135	NM_000222.2	829	Gct/Cct					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001514-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			767	62	268	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	232	277	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53246998	53246998	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002873-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	249	215	0	ENST00000375401.3:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000375401	NM_004187.3	168	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000811-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	86	201	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113172	209113172	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	44	414	0	ENST00000345146.2:c.335T>C	p.Ile112Thr	p.I112T	ENST00000345146	NM_005896.2	112	aTt/aCt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916781	178916781	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002077-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			980	53	625	0	ENST00000263967.3:c.168C>A	p.Tyr56Ter	p.Y56*	ENST00000263967	NM_006218.2	56	taC/taA					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28608442	28608442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002077-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	114	491	0	ENST00000241453.7:c.1700A>G	p.Lys567Arg	p.K567R	ENST00000241453	NM_004119.2	567	aAa/aGa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000876-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	15	283	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0001766-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	88	551	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151879092	151879092	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	59	251	0	ENST00000262189.6:c.5853T>G	p.Asp1951Glu	p.D1951E	ENST00000262189	NM_170606.2	1951	gaT/gaG					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108115727	108115727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	72	201	0	ENST00000278616.4:c.875C>T	p.Pro292Leu	p.P292L	ENST00000278616	NM_000051.3	292	cCg/cTg					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061204	38061229	+	protein_altering_variant	In_Frame_Del	DEL	CGGCGCAAGTAGCAGCCGTTCTCGAA	CGGCGCAAGTAGCAGCCGTTCTCGAA	TAGCGCTT			P-0004355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	87	193	0	ENST00000250448.2:c.760_785delinsAAGCGCTA	p.Phe254_Arg262delinsLysArgTyr	p.F254_R262delinsKRY	ENST00000250448	NM_004496.3	254	TTCGAGAACGGCTGCTACTTGCGCCGc/AAGCGCTAc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	47	310	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2202720	2202720	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	24	404	0	ENST00000398665.3:c.729T>G	p.Phe243Leu	p.F243L	ENST00000398665	NM_032482.2	243	ttT/ttG					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37866393	37866393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			733	79	300	1	ENST00000269571.5:c.698C>T	p.Thr233Ile	p.T233I	ENST00000269571		233	aCt/aTt					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37627361	37627361	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1135	103	422	3	ENST00000447079.4:c.1280del	p.Leu427CysfsTer9	p.L427Cfs*9	ENST00000447079	NM_015083.1	426	Ttt/tt					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37627744	37627744	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002196-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1100	100	465	0	ENST00000447079.4:c.1661del	p.Leu554CysfsTer56	p.L554Cfs*56	ENST00000447079	NM_015083.1	553	ccT/cc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3828768	3828768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	336	373	0	ENST00000262367.5:c.1874G>A	p.Arg625His	p.R625H	ENST00000262367	NM_004380.2	625	cGc/cAc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023327	27023327	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	83	99	0	ENST00000324856.7:c.437del	p.Pro146GlnfsTer86	p.P146Qfs*86	ENST00000324856	NM_006015.4	145	Ccc/cc					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	385	443	0	ENST00000397062.3:c.241G>A	p.Gly81Ser	p.G81S	ENST00000397062	NM_006164.4	81	Ggt/Agt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108206616	108206616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	305	316	0	ENST00000278616.4:c.8196C>G	p.Phe2732Leu	p.F2732L	ENST00000278616	NM_000051.3	2732	ttC/ttG					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115120617	115120617	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	276	337	0	ENST00000257566.3:c.389G>A	p.Arg130Lys	p.R130K	ENST00000257566	NM_016569.3	130	aGg/aAg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221998	1221998	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	204	335	3	ENST00000326873.7:c.913C>T	p.Gln305Ter	p.Q305*	ENST00000326873	NM_000455.4	305	Cag/Tag					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76849164	76849164	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0003703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	153	427	0	ENST00000373344.5:c.6110+2T>A		p.X2037_splice	ENST00000373344	NM_000489.3	2037						NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46521477	46521477	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	150	438	0	ENST00000262741.5:c.931C>G	p.Gln311Glu	p.Q311E	ENST00000262741	NM_003629.3	311	Caa/Gaa					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248055	59248055	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	111	171	0	ENST00000371222.2:c.688C>T	p.Gln230Ter	p.Q230*	ENST00000371222	NM_002228.3	230	Cag/Tag					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29455225	29455225	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs61754865		P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	98	313	0	ENST00000389048.3:c.2577G>C	p.Glu859Asp	p.E859D	ENST00000389048	NM_004304.4	859	gaG/gaC					NEWRECORD																																																																									
HIST1H3A	0	MSKCC	GRCh37	6	26020875	26020875	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	447	624	0	ENST00000357647.3:c.158G>C	p.Arg53Pro	p.R53P	ENST00000357647	NM_003529.2	53	cGc/cCc					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117861203	117861203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1926	180	367	0	ENST00000297338.2:c.1686G>C	p.Gln562His	p.Q562H	ENST00000297338	NM_006265.2	562	caG/caC					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91292986	91292986	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	104	267	0	ENST00000355112.3:c.488C>A	p.Ser163Tyr	p.S163Y	ENST00000355112	NM_000057.2	163	tCt/tAt					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23640569	23640569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	161	338	0	ENST00000261584.4:c.2542G>C	p.Asp848His	p.D848H	ENST00000261584	NM_024675.3	848	Gat/Cat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	177	233	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15297706	15297706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	243	359	0	ENST00000263388.2:c.1934G>T	p.Cys645Phe	p.C645F	ENST00000263388	NM_000435.2	645	tGc/tTc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86686665	86686665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1091	88	309	0	ENST00000274376.6:c.3109C>G	p.Gln1037Glu	p.Q1037E	ENST00000274376	NM_002890.2	1037	Caa/Gaa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243560	46243560	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0000795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			857	156	233	0	ENST00000334344.6:c.1912+1G>A		p.X638_splice	ENST00000334344	NM_152641.2	638						NEWRECORD																																																																									
BBC3	0	MSKCC	GRCh37	19	47725097	47725097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			942	120	477	0	ENST00000449228.1:c.647C>T	p.Thr216Ile	p.T216I	ENST00000449228	NM_001127240.2	216	aCc/aTc					NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22153384	22153384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1127	99	425	0	ENST00000215832.6:c.526C>A	p.Pro176Thr	p.P176T	ENST00000215832	NM_002745.4	176	Cca/Aca					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103515036	103515036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	207	282	2	ENST00000355739.4:c.1537G>A	p.Ala513Thr	p.A513T	ENST00000355739	NM_000123.3	513	Gca/Aca					NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	65	343	2	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	189	318	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	175	302	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241680489	241680489	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200007371		P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	289	432	0	ENST00000366560.3:c.260G>A	p.Arg87His	p.R87H	ENST00000366560	NM_000143.3	87	cGc/cAc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176638491	176638491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	204	378	0	ENST00000439151.2:c.3091C>T	p.Arg1031Ter	p.R1031*	ENST00000439151	NM_022455.4	1031	Cga/Tga					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17131402	17131402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	223	368	3	ENST00000285071.4:c.50G>A	p.Arg17His	p.R17H	ENST00000285071	NM_144997.5	17	cGc/cAc					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65339154	65339154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	244	389	0	ENST00000342505.4:c.382C>T	p.Arg128Cys	p.R128C	ENST00000342505	NM_002227.2	128	Cgt/Tgt					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162724541	162724541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	276	420	0	ENST00000367921.3:c.313C>T	p.Arg105Cys	p.R105C	ENST00000367921	NM_006182.2	105	Cgc/Tgc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142268512	142268512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	163	247	0	ENST00000350721.4:c.2980A>G	p.Thr994Ala	p.T994A	ENST00000350721	NM_001184.3	994	Aca/Gca					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553257	106553257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	280	416	0	ENST00000369096.4:c.1222G>A	p.Ala408Thr	p.A408T	ENST00000369096	NM_001198.3	408	Gct/Act					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152012289	152012289	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			686	304	454	0	ENST00000262189.6:c.524A>C	p.Asp175Ala	p.D175A	ENST00000262189	NM_170606.2	175	gAc/gCc					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128752963	128752963	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	296	377	0	ENST00000377970.2:c.1124A>C	p.Asn375Thr	p.N375T	ENST00000377970	NM_002467.4	375	aAc/aCc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139417422	139417422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	217	374	0	ENST00000277541.6:c.622G>A	p.Ala208Thr	p.A208T	ENST00000277541	NM_017617.3	208	Gcc/Acc					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43600615	43600615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	289	380	0	ENST00000355710.3:c.841G>A	p.Ala281Thr	p.A281T	ENST00000355710	NM_020975.4	281	Gcc/Acc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333143	70333143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	231	492	0	ENST00000373644.4:c.1048G>A	p.Glu350Lys	p.E350K	ENST00000373644	NM_030625.2	350	Gaa/Aaa					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123353286	123353286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	281	481	0	ENST00000358487.5:c.46G>A	p.Ala16Thr	p.A16T	ENST00000358487	NM_000141.4	16	Gca/Aca					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741868	17741868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	44	59	0	ENST00000250003.3:c.539C>T	p.Ala180Val	p.A180V	ENST00000250003	NM_002478.4	180	gCg/gTg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108186775	108186775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	260	391	0	ENST00000278616.4:c.6133G>A	p.Ala2045Thr	p.A2045T	ENST00000278616	NM_000051.3	2045	Gcc/Acc					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58144521	58144521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	258	304	0	ENST00000257904.6:c.550G>A	p.Glu184Lys	p.E184K	ENST00000257904	NM_000075.3	184	Gaa/Aaa					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69233576	69233576	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	199	222	0	ENST00000462284.1:c.1441T>C	p.Cys481Arg	p.C481R	ENST00000462284	NM_002392.5	481	Tgc/Cgc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435459	110435459	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	199	235	0	ENST00000375856.3:c.2942T>A	p.Leu981His	p.L981H	ENST00000375856	NM_003749.2	981	cTc/cAc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061472	38061472	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	257	281	0	ENST00000250448.2:c.517T>C	p.Tyr173His	p.Y173H	ENST00000250448	NM_004496.3	173	Tac/Cac					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99442813	99442813	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	210	391	0	ENST00000268035.6:c.1210A>C	p.Asn404His	p.N404H	ENST00000268035	NM_000875.3	404	Aac/Cac					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68846129	68846129	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	234	367	0	ENST00000261769.5:c.1100A>G	p.Asp367Gly	p.D367G	ENST00000261769	NM_004360.3	367	gAc/gGc					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41245027	41245027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	290	441	0	ENST00000357654.3:c.2521C>T	p.Arg841Trp	p.R841W	ENST00000357654	NM_007294.3	841	Cgg/Tgg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	243	461	1	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5238941	5238941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	130	234	0	ENST00000357368.4:c.1838C>T	p.Thr613Met	p.T613M	ENST00000357368	NM_002850.3	613	aCg/aTg					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39657709	39657709	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	182	234	0	ENST00000361337.2:c.2T>C	p.Met1?	p.M1?	ENST00000361337	NM_003286.2	1	aTg/aCg					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42840450	42840450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			358	157	241	1	ENST00000398585.3:c.1298T>C	p.Val433Ala	p.V433A	ENST00000398585	NM_001135099.1	433	gTg/gCg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66937395	66937395	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	325	267	0	ENST00000374690.3:c.2249T>C	p.Met750Thr	p.M750T	ENST00000374690	NM_000044.3	750	aTg/aCg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	350	261	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65306976	65306976	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	226	455	0	ENST00000342505.4:c.2601delC	p.Thr868HisfsTer8	p.T868Hfs*8	ENST00000342505	NM_002227.2	867	ccC/cc					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65330611	65330611	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	268	450	0	ENST00000342505.4:c.1035delA	p.Lys345AsnfsTer32	p.K345Nfs*32	ENST00000342505	NM_002227.2	345	aaA/aa					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149497245	149497245	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			628	66	393	0	ENST00000261799.4:c.3073delC	p.Leu1025CysfsTer20	p.L1025Cfs*20	ENST00000261799	NM_002609.3	1025	Ctg/tg					NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42796883	42796883	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	252	473	1	ENST00000575354.2:c.3347del	p.Pro1116GlnfsTer45	p.P1116Qfs*45	ENST00000575354	NM_015125.3	1114	gCc/gc					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164805	36164805	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001071-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	266	426	1	ENST00000300305.3:c.1070delC	p.Pro357ArgfsTer237	p.P357Rfs*237	ENST00000300305		357	cCg/cg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	231	179	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	239	86	1	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692922	89692922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	251	156	0	ENST00000371953.3:c.406T>C	p.Cys136Arg	p.C136R	ENST00000371953	NM_000314.4	136	Tgt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	171	124	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151859842	151859842	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	238	167	0	ENST00000262189.6:c.10820delC	p.Thr3607LysfsTer23	p.T3607Kfs*23	ENST00000262189	NM_170606.2	3607	aCa/aa					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27777972	27777972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	53	583	0	ENST00000369163.2:c.121C>T	p.Arg41Cys	p.R41C	ENST00000369163	NM_003536.2	41	Cgc/Tgc					NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	38	531	1	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116409781	116409781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	61	334	0	ENST00000397752.3:c.2666C>T	p.Ser889Phe	p.S889F	ENST00000397752	NM_000245.2	889	tCt/tTt					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372319	55372319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	33	227	0	ENST00000297316.4:c.1009C>T	p.Pro337Ser	p.P337S	ENST00000297316	NM_022454.3	337	Ccg/Tcg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49442528	49442528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	27	337	0	ENST00000301067.7:c.4045A>C	p.Ser1349Arg	p.S1349R	ENST00000301067	NM_003482.3	1349	Agt/Cgt					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061360	38061360	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	98	358	0	ENST00000250448.2:c.629A>G	p.Asn210Ser	p.N210S	ENST00000250448	NM_004496.3	210	aAc/aGc					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729083	66729083	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	90	397	0	ENST00000307102.5:c.292-1G>A		p.X98_splice	ENST00000307102	NM_002755.3	98						NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39584339	39584339	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	35	202	0	ENST00000262039.4:c.1004A>C	p.Lys335Thr	p.K335T	ENST00000262039	NM_002647.2	335	aAa/aCa					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			989	238	376	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	81	192	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55266410	55266410	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			877	94	392	0	ENST00000275493.2:c.2702G>A	p.Gly901Glu	p.G901E	ENST00000275493	NM_005228.3	901	gGg/gAg					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45423120	45423120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	86	215	0	ENST00000262160.6:c.8C>T	p.Ser3Phe	p.S3F	ENST00000262160	NM_005901.5	3	tCc/tTc					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0004219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	28	438	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	38	517	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28636160	28636160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	153	549	0	ENST00000241453.7:c.212G>C	p.Ser71Thr	p.S71T	ENST00000241453	NM_004119.2	71	aGc/aCc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	14	420	1	ENST00000342988.3:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000342988	NM_005359.5	537	Gac/Tac					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	118	88	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	289	220	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	274	211	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5212037	5212037	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	128	195	0	ENST00000357368.4:c.4994T>A	p.Ile1665Asn	p.I1665N	ENST00000357368	NM_002850.3	1665	aTc/aAc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66937442	66937442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	311	282	0	ENST00000374690.3:c.2296G>A	p.Ala766Thr	p.A766T	ENST00000374690	NM_000044.3	766	Gcc/Acc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175243	112175243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	88	136	0	ENST00000257430.4:c.3952del	p.Asp1318IlefsTer3	p.D1318Ifs*3	ENST00000257430	NM_000038.5	1318	Gat/at					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114710540	114710540	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	171	295	0	ENST00000543371.1:c.28del	p.Asp10MetfsTer3	p.D10Mfs*3	ENST00000543371	NM_001198531.1	9	Ggg/gg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0002702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	268	600	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			90	292	395	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175024	112175024	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	140	380	0	ENST00000257430.4:c.3733A>T	p.Lys1245Ter	p.K1245*	ENST00000257430	NM_000038.5	1245	Aag/Tag					NEWRECORD																																																																									
MEF2B	0	MSKCC	GRCh37	19	19260238	19260238	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	129	363	0	ENST00000162023.5:c.55G>A	p.Val19Met	p.V19M	ENST00000162023		19	Gtg/Atg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15968808	15968808	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	352	343	0	ENST00000268712.3:c.4942del	p.Ala1648GlnfsTer8	p.A1648Qfs*8	ENST00000268712	NM_006311.3	1648	Gca/ca					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11144113	11144113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	22	689	0	ENST00000344626.4:c.3694G>A	p.Gly1232Ser	p.G1232S	ENST00000344626	NM_003072.3	1232	Ggc/Agc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001812-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	176	342	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001812-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	192	476	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0001812-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			742	282	460	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243716098	243716098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001812-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	148	421	1	ENST00000263826.5:c.1096C>T	p.Pro366Ser	p.P366S	ENST00000263826	NM_005465.4	366	Cct/Tct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	168	333	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187540140	187540140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			536	183	410	2	ENST00000441802.2:c.7600G>A	p.Asp2534Asn	p.D2534N	ENST00000441802	NM_005245.3	2534	Gac/Aac					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187549458	187549458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	132	337	0	ENST00000441802.2:c.4660G>C	p.Asp1554His	p.D1554H	ENST00000441802	NM_005245.3	1554	Gac/Cac					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139417398	139417398	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	111	261	0	ENST00000277541.6:c.646G>C	p.Glu216Gln	p.E216Q	ENST00000277541	NM_017617.3	216	Gag/Cag					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118342821	118342821	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	75	296	0	ENST00000534358.1:c.947C>G	p.Ser316Trp	p.S316W	ENST00000534358	NM_005933.3	316	tCg/tGg					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41243482	41243482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	167	409	0	ENST00000357654.3:c.4066C>G	p.Gln1356Glu	p.Q1356E	ENST00000357654	NM_007294.3	1356	Caa/Gaa					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17942065	17942065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	59	329	0	ENST00000458235.1:c.2950C>T	p.Arg984Cys	p.R984C	ENST00000458235	NM_000215.3	984	Cgc/Tgc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66217288	66217297	+	frameshift_variant	Frame_Shift_Del	DEL	TGAATCACAG	TGAATCACAG	-			P-0002651-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	70	204	0	ENST00000273854.3:c.2318_2327del	p.Thr773SerfsTer6	p.T773Sfs*6	ENST00000273854	NM_004439.5	773	aCTGTGATTCAg/ag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	328	494	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43806100	43806100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	385	508	0	ENST00000372470.3:c.896T>C	p.Val299Ala	p.V299A	ENST00000372470	NM_005373.2	299	gTt/gCt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76829714	76829714	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	317	502	1	ENST00000373344.5:c.6326+1G>A		p.X2109_splice	ENST00000373344	NM_000489.3	2109						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			934	305	314	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29917820	29917820	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1139	244	468	1	ENST00000389048.3:c.848T>C	p.Leu283Pro	p.L283P	ENST00000389048	NM_004304.4	283	cTc/cCc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116371786	116371786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	354	454	0	ENST00000397752.3:c.1265C>T	p.Thr422Ile	p.T422I	ENST00000397752	NM_000245.2	422	aCa/aTa					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851033	63851033	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202205668		P-0000186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			773	194	270	0	ENST00000279873.7:c.1811C>T	p.Pro604Leu	p.P604L	ENST00000279873	NM_032199.2	604	cCg/cTg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106908	27106910	+	inframe_deletion	In_Frame_Del	DEL	CCT	CCT	-			P-0000186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	286	280	0	ENST00000324856.7:c.6519_6521delCCT	p.Asn2173_Leu2174delinsLys	p.N2173_L2174delinsK	ENST00000324856	NM_006015.4	2173	aaCCTg/aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000186-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1360	359	490	1	ENST00000269305.4:c.833delC	p.Pro278LeufsTer67	p.P278Lfs*67	ENST00000269305	NM_001126112.2	278	cCt/ct					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125848	47125848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	44	407	0	ENST00000409792.3:c.5422C>T	p.Pro1808Ser	p.P1808S	ENST00000409792	NM_014159.6	1808	Ccc/Tcc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041121	42041141	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCCAGGTATAAAGTTCTTTTT	CCCAGGTATAAAGTTCTTTTT	-			P-0003460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	136	980	0	ENST00000219905.7:c.5499_5503+16del		p.X1833_splice	ENST00000219905	NM_001164273.1	1833						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	36	533	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	185	236	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25467167	25467167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	124	250	0	ENST00000264709.3:c.1708G>T	p.Gly570Trp	p.G570W	ENST00000264709	NM_175629.2	570	Ggg/Tgg					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149863	202149863	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	128	217	0	ENST00000358485.4:c.1304A>T	p.Glu435Val	p.E435V	ENST00000358485	NM_001080125.1	435	gAg/gTg					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1803464	1803464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	80	214	0	ENST00000260795.2:c.733G>C	p.Val245Leu	p.V245L	ENST00000260795		245	Gtg/Ctg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66201843	66201843	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	87	144	0	ENST00000273854.3:c.2659G>C	p.Val887Leu	p.V887L	ENST00000273854	NM_004439.5	887	Gtg/Ctg					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589642	67589642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	59	97	0	ENST00000274335.5:c.1405G>T	p.Glu469Ter	p.E469*	ENST00000274335		469	Gaa/Taa					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287818	33287818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			660	192	308	0	ENST00000374542.5:c.1435G>C	p.Glu479Gln	p.E479Q	ENST00000374542	NM_001141970.1	479	Gag/Cag					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161990392	161990392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	102	229	0	ENST00000366898.1:c.928G>T	p.Glu310Ter	p.E310*	ENST00000366898	NM_004562.2	310	Gag/Tag					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56495077	56495077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	150	250	0	ENST00000267101.3:c.3434C>T	p.Pro1145Leu	p.P1145L	ENST00000267101	NM_001982.3	1145	cCa/cTa					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112888210	112888210	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	126	252	0	ENST00000351677.2:c.226G>C	p.Glu76Gln	p.E76Q	ENST00000351677	NM_002834.3	76	Gag/Cag					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115118863	115118863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	124	229	0	ENST00000257566.3:c.478G>T	p.Asp160Tyr	p.D160Y	ENST00000257566	NM_016569.3	160	Gac/Tac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	85	145	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40735503	40735503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	128	221	0	ENST00000373198.4:c.3370G>T	p.Glu1124Ter	p.E1124*	ENST00000373198	NM_133170.3	1124	Gag/Tag					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76778738	76778738	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	108	404	0	ENST00000373344.5:c.6841G>T	p.Glu2281Ter	p.E2281*	ENST00000373344	NM_000489.3	2281	Gag/Tag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106048	27106056	+	inframe_deletion	In_Frame_Del	DEL	GGTACACCA	GGTACACCA	-			P-0000765-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	49	113	0	ENST00000324856.7:c.5661_5669del	p.Pro1889_Thr1891del	p.P1889_T1891del	ENST00000324856	NM_006015.4	1887	GGTACACCA/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003013-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	220	322	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176012347	176012347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003013-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	101	368	0	ENST00000367669.3:c.1587G>T	p.Leu529Phe	p.L529F	ENST00000367669	NM_022457.5	529	ttG/ttT					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81422066	81422066	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003013-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	82	230	0	ENST00000298171.2:c.42C>A	p.Asp14Glu	p.D14E	ENST00000298171	NM_000369.2	14	gaC/gaA					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0000343-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	25	612	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0000343-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	28	605	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000343-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	54	526	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577564	7577564	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000343-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	12	301	0	ENST00000269305.4:c.717C>A	p.Asn239Lys	p.N239K	ENST00000269305	NM_001126112.2	239	aaC/aaA					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002439-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			252	37	222	0	ENST00000250448.2:c.798C>A	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttA					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42840410	42840411	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0002439-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	51	362	0	ENST00000398585.3:c.1337_1338del	p.Arg446MetfsTer8	p.R446Mfs*8	ENST00000398585	NM_001135099.1	446	aGA/a					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0000341-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	166	283	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	36	519	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16257336	16257336	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	71	365	0	ENST00000375759.3:c.4601C>G	p.Ser1534Ter	p.S1534*	ENST00000375759	NM_015001.2	1534	tCa/tGa					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178096027	178096027	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	57	289	0	ENST00000397062.3:c.1304G>T	p.Gly435Val	p.G435V	ENST00000397062	NM_006164.4	435	gGt/gTt					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670550	134670550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	92	426	0	ENST00000398015.3:c.461G>T	p.Arg154Met	p.R154M	ENST00000398015	NM_004441.4	154	aGg/aTg					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	55	441	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135796754	135796754	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	56	397	0	ENST00000298552.3:c.733C>T	p.Arg245Ter	p.R245*	ENST00000298552	NM_001162426.1	245	Cga/Tga					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67200479	67200479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	30	332	4	ENST00000312629.5:c.673G>T	p.Val225Phe	p.V225F	ENST00000312629	NM_003952.2	225	Gtc/Ttc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971036	21971061	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCACGTCCAGCCGCGCCCCGGCC	CGCGCACGTCCAGCCGCGCCCCGGCC	-			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	49	175	0	ENST00000304494.5:c.297_322del	p.Ala100CysfsTer11	p.A100Cfs*11	ENST00000304494	NM_000077.4	99	cgGGCCGGGGCGCGGCTGGACGTGCGCGat/cgat					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971036	21971061	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCACGTCCAGCCGCGCCCCGGCC	CGCGCACGTCCAGCCGCGCCCCGGCC	-			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	49	175	0	ENST00000304494.5:c.297_322del	p.Ala100CysfsTer11	p.A100Cfs*11	ENST00000304494	NM_000077.4	99	cgGGCCGGGGCGCGGCTGGACGTGCGCGat/cgat					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971036	21971061	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCACGTCCAGCCGCGCCCCGGCC	CGCGCACGTCCAGCCGCGCCCCGGCC	-			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	49	175	0	ENST00000304494.5:c.297_322del	p.Ala100CysfsTer11	p.A100Cfs*11	ENST00000304494	NM_000077.4	99	cgGGCCGGGGCGCGGCTGGACGTGCGCGat/cgat					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49927406	49927406	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	42	641	0	ENST00000296474.3:c.3898del	p.Leu1300TrpfsTer20	p.L1300Wfs*20	ENST00000296474	NM_002447.2	1300	Ctg/tg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29008053	29008054	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0003439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	33	394	0	ENST00000282397.4:c.715_716delinsAG	p.Pro239Arg	p.P239R	ENST00000282397	NM_002019.4	239	CCa/AGa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604662	48604662	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001633-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	29	486	0	ENST00000342988.3:c.1484T>C	p.Leu495Pro	p.L495P	ENST00000342988	NM_005359.5	495	cTt/cCt					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6043597	6043604	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTTACTT	ACTTACTT	-			P-0001633-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	13	187	0	ENST00000265849.7:c.249_250+6del		p.X83_splice	ENST00000265849	NM_000535.5	83						NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220592	1220592	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001633-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	279	522	0	ENST00000326873.7:c.611del	p.Phe204SerfsTer83	p.F204Sfs*83	ENST00000326873	NM_000455.4	204	Ttc/tc					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25457219	25457226	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCAGT	CCAGCAGT	GTG			P-0001633-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			791	145	605	0	ENST00000264709.3:c.2661_2668delinsCAC	p.Arg887SerfsTer32	p.R887Sfs*32	ENST00000264709	NM_175629.2	887	agACTGCTGGgc/agCACgc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087947	27087947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			442	96	229	0	ENST00000324856.7:c.2234G>C	p.Ser745Thr	p.S745T	ENST00000324856	NM_006015.4	745	aGc/aCc					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72058537	72058537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			676	155	407	0	ENST00000357731.5:c.903C>A	p.Asn301Lys	p.N301K	ENST00000357731	NM_173808.2	301	aaC/aaA					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99163154	99163154	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			364	204	218	0	ENST00000074304.5:c.1160A>G	p.Lys387Arg	p.K387R	ENST00000074304	NM_001134224.1	387	aAa/aGa					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35874551	35874551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			486	213	310	0	ENST00000303115.3:c.707G>T	p.Gly236Val	p.G236V	ENST00000303115	NM_002185.3	236	gGg/gTg					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67569301	67569301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			418	190	226	0	ENST00000274335.5:c.418G>A	p.Glu140Lys	p.E140K	ENST00000274335		140	Gaa/Aaa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			207	314	234	0	ENST00000278616.4:c.8631G>C	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttC					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434552	49434552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			244	116	133	0	ENST00000301067.7:c.7001G>T	p.Arg2334Leu	p.R2334L	ENST00000301067	NM_003482.3	2334	cGg/cTg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88727490	88727490	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			285	127	227	0	ENST00000360948.2:c.289G>C	p.Val97Leu	p.V97L	ENST00000360948	NM_001012338.2	97	Gtg/Ctg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89350927	89350927	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			599	288	434	0	ENST00000301030.4:c.2023G>C	p.Glu675Gln	p.E675Q	ENST00000301030	NM_001256183.1	675	Gag/Cag					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207201	1207201	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			121	139	136	0	ENST00000326873.7:c.289A>T	p.Lys97Ter	p.K97*	ENST00000326873	NM_000455.4	97	Aag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			174	219	245	0	ENST00000171111.5:c.779G>T	p.Arg260Leu	p.R260L	ENST00000171111	NM_203500.1	260	cGa/cTa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790139	40790139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			234	103	149	0	ENST00000373198.4:c.2592C>G	p.Ile864Met	p.I864M	ENST00000373198	NM_133170.3	864	atC/atG					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38508182	38508184	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0003537-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			330	86	266	1	ENST00000254066.5:c.499_501delAAG	p.Lys167del	p.K167del	ENST00000254066	NM_000964.3	164	AAG/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	284	287	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37657509	37657509	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	336	366	0	ENST00000447079.4:c.2426T>G	p.Phe809Cys	p.F809C	ENST00000447079	NM_015083.1	809	tTt/tGt					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37657542	37657542	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001462-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	380	411	0	ENST00000447079.4:c.2459T>C	p.Leu820Ser	p.L820S	ENST00000447079	NM_015083.1	820	tTa/tCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002318-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	1175	327	6	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2962846	2962846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002318-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			750	263	269	0	ENST00000396946.4:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000396946	NM_032415.4	688	Cga/Tga					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118376169	118376169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002318-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1242	322	313	1	ENST00000534358.1:c.9562C>T	p.Leu3188Phe	p.L3188F	ENST00000534358	NM_005933.3	3188	Ctt/Ttt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	531	519	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425853	49425853	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	145	468	0	ENST00000301067.7:c.12635G>A	p.Arg4212Gln	p.R4212Q	ENST00000301067	NM_003482.3	4212	cGg/cAg					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42796466	42796466	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	217	413	1	ENST00000575354.2:c.3023A>G	p.Gln1008Arg	p.Q1008R	ENST00000575354	NM_015125.3	1008	cAg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577533	7577547	+	inframe_deletion	In_Frame_Del	DEL	GCCTCCGGTTCATGC	GCCTCCGGTTCATGC	-			P-0004386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	131	413	0	ENST00000269305.4:c.734_748del	p.Gly245_Pro250delinsAla	p.G245_P250delinsA	ENST00000269305	NM_001126112.2	245	gGCATGAACCGGAGGCcc/gcc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	120	183	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47142966	47142966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	191	259	1	ENST00000409792.3:c.4997A>G	p.Tyr1666Cys	p.Y1666C	ENST00000409792	NM_014159.6	1666	tAt/tGt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913026	32913026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	196	459	3	ENST00000380152.3:c.4534C>T	p.Arg1512Cys	p.R1512C	ENST00000380152		1512	Cgt/Tgt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41991115	41991115	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	244	283	0	ENST00000219905.7:c.2068C>T	p.Gln690Ter	p.Q690*	ENST00000219905	NM_001164273.1	690	Cag/Tag					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11096901	11096901	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	100	270	1	ENST00000344626.4:c.392C>A	p.Ser131Tyr	p.S131Y	ENST00000344626	NM_003072.3	131	tCt/tAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001127-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			413	279	353	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521708	89521708	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001127-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			329	74	285	0	ENST00000336596.2:c.2785A>T	p.Lys929Ter	p.K929*	ENST00000336596	NM_005233.5	929	Aag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600377	10600377	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001127-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			455	241	460	0	ENST00000171111.5:c.1478A>C	p.Glu493Ala	p.E493A	ENST00000171111	NM_203500.1	493	gAg/gCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	155	161	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11292519	11292519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	161	288	0	ENST00000361445.4:c.2488G>C	p.Asp830His	p.D830H	ENST00000361445	NM_004958.3	830	Gat/Cat					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11308130	11308130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	94	193	0	ENST00000361445.4:c.862G>A	p.Glu288Lys	p.E288K	ENST00000361445	NM_004958.3	288	Gaa/Aaa					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39923816	39923816	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	98	343	0	ENST00000378444.4:c.3275T>C	p.Phe1092Ser	p.F1092S	ENST00000378444	NM_001123385.1	1092	tTt/tCt					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49928807	49928861	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AACCCAGAGCCAGATGAACACTGACCCGCTGAGGTGAGCGGATGAACTGGAGCAG	AACCCAGAGCCAGATGAACACTGACCCGCTGAGGTGAGCGGATGAACTGGAGCAG	-			P-0003763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	69	337	0	ENST00000296474.3:c.3505_3534+25del		p.X1169_splice	ENST00000296474	NM_002447.2	1169						NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955425	48955426	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AA			P-0003763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	24	200	0	ENST00000267163.4:c.1541_1542delinsAA	p.Phe514Ter	p.F514*	ENST00000267163	NM_000321.2	514	tTC/tAA					NEWRECORD																																																																									
VTCN1	0	MSKCC	GRCh37	1	117699544	117699544	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0003766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	104	135	1	ENST00000369458.3:c.98-1G>T		p.X33_splice	ENST00000369458	NM_024626.3	33						NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188196	10188196	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0003766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	187	223	0	ENST00000256474.2:c.341-2A>G		p.X114_splice	ENST00000256474	NM_000551.3	114						NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	393233	393233	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	189	245	0	ENST00000380956.4:c.81G>A	p.Trp27Ter	p.W27*	ENST00000380956	NM_001195286.1	27	tgG/tgA					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39704892	39704892	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	115	198	0	ENST00000361337.2:c.237C>G	p.Asp79Glu	p.D79E	ENST00000361337	NM_003286.2	79	gaC/gaG					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157749	106157749	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003766-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	164	198	0	ENST00000380013.4:c.2650del	p.Gln884LysfsTer37	p.Q884Kfs*37	ENST00000380013	NM_001127208.2	884	Caa/aa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16256949	16256949	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	32	371	0	ENST00000375759.3:c.4214C>G	p.Ser1405Cys	p.S1405C	ENST00000375759	NM_015001.2	1405	tCt/tGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	400	58	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65348993	65348993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	122	161	0	ENST00000342505.4:c.172G>A	p.Glu58Lys	p.E58K	ENST00000342505	NM_002227.2	58	Gag/Aag					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66230874	66230874	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	283	233	0	ENST00000273854.3:c.2097A>C	p.Lys699Asn	p.K699N	ENST00000273854	NM_004439.5	699	aaA/aaC					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187540157	187540157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			758	322	300	0	ENST00000441802.2:c.7583C>G	p.Thr2528Ser	p.T2528S	ENST00000441802	NM_005245.3	2528	aCt/aGt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180039516	180039516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	178	389	0	ENST00000261937.6:c.3527G>T	p.Arg1176Met	p.R1176M	ENST00000261937	NM_182925.4	1176	aGg/aTg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106513012	106513012	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	175	116	0	ENST00000359195.3:c.2026G>T	p.Ala676Ser	p.A676S	ENST00000359195	NM_002649.2	676	Gcc/Tcc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49432042	49432042	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	257	549	0	ENST00000301067.7:c.9097A>T	p.Thr3033Ser	p.T3033S	ENST00000301067	NM_003482.3	3033	Acc/Tcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579582	7579583	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	G			P-0000235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	95	221	0	ENST00000269305.4:c.104_105delTGinsC	p.Leu35SerfsTer9	p.L35Sfs*9	ENST00000269305	NM_001126112.2	35	tTG/tC					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32417944	32417944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	199	301	2	ENST00000332351.3:c.1108C>T	p.Arg370Cys	p.R370C	ENST00000332351	NM_024426.4	370	Cgt/Tgt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16075154	16075154	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	120	317	0	ENST00000268712.3:c.398T>A	p.Leu133Gln	p.L133Q	ENST00000268712	NM_006311.3	133	cTg/cAg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720843	89720843	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	33	193	0	ENST00000371953.3:c.996del	p.Ala333ProfsTer11	p.A333Pfs*11	ENST00000371953	NM_000314.4	332	Aaa/aa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711973	89711973	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	13	265	0	ENST00000371953.3:c.591del	p.Met198Ter	p.M198*	ENST00000371953	NM_000314.4	197	aaG/aa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			59	104	258	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521633	89521633	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	332	380	0	ENST00000336596.2:c.2710G>T	p.Asp904Tyr	p.D904Y	ENST00000336596	NM_005233.5	904	Gac/Tac					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430851	181430851	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			872	140	625	0	ENST00000325404.1:c.703A>T	p.Met235Leu	p.M235L	ENST00000325404	NM_003106.3	235	Atg/Ttg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176089	112176089	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001247-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	241	349	0	ENST00000257430.4:c.4798A>G	p.Lys1600Glu	p.K1600E	ENST00000257430	NM_000038.5	1600	Aaa/Gaa					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156851286	156851286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000391-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	44	662	0	ENST00000524377.1:c.2243G>A	p.Arg748Gln	p.R748Q	ENST00000524377	NM_002529.3	748	cGg/cAg					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69465997	69465997	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	70	460	0	ENST00000227507.2:c.835G>T	p.Glu279Ter	p.E279*	ENST00000227507	NM_053056.2	279	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	77	604	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022628	31022628	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	69	612	0	ENST00000375687.4:c.2113G>T	p.Glu705Ter	p.E705*	ENST00000375687	NM_015338.5	705	Gag/Tag					NEWRECORD																																																																									
CCND3	0	MSKCC	GRCh37	6	41909336	41909336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	36	282	0	ENST00000372991.4:c.52G>A	p.Asp18Asn	p.D18N	ENST00000372991	NM_001760.3	18	Gac/Aac					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108165759	108165759	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	59	532	0	ENST00000278616.4:c.4882A>T	p.Met1628Leu	p.M1628L	ENST00000278616	NM_000051.3	1628	Atg/Ttg					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28608224	28608224	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1186	70	740	0	ENST00000241453.7:c.1832A>T	p.Glu611Val	p.E611V	ENST00000241453	NM_004119.2	611	gAg/gTg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32936713	32936713	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	58	513	0	ENST00000380152.3:c.7859T>A	p.Val2620Asp	p.V2620D	ENST00000380152		2620	gTt/gAt					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63530180	63530180	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	60	547	0	ENST00000307078.5:c.2255A>C	p.Lys752Thr	p.K752T	ENST00000307078	NM_004655.3	752	aAa/aCa					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45868188	45868188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	58	489	0	ENST00000391945.4:c.502G>A	p.Val168Met	p.V168M	ENST00000391945	NM_000400.3	168	Gtg/Atg					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225339012	225339012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000039-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			695	98	784	0	ENST00000264414.4:c.2257T>C	p.Tyr753His	p.Y753H	ENST00000264414	NM_003590.4	753	Tat/Cat					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133750275	133750275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000039-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	27	610	0	ENST00000318560.5:c.1106G>A	p.Cys369Tyr	p.C369Y	ENST00000318560	NM_005157.4	369	tGc/tAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			24	259	584	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73337717	73337717	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			45	418	581	0	ENST00000377767.4:c.1999A>T	p.Met667Leu	p.M667L	ENST00000377767	NM_014953.3	667	Atg/Ttg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	78	210	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67198848	67198848	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	92	263	0	ENST00000312629.5:c.319G>C	p.Val107Leu	p.V107L	ENST00000312629	NM_003952.2	107	Gtg/Ctg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42040942	42040942	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	65	540	0	ENST00000219905.7:c.5320C>G	p.Leu1774Val	p.L1774V	ENST00000219905	NM_001164273.1	1774	Ctt/Gtt					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53222492	53222492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	47	125	0	ENST00000375401.3:c.4340G>T	p.Gly1447Val	p.G1447V	ENST00000375401	NM_004187.3	1447	gGg/gTg					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412034	116412061	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCCAGAAGGTATATTTCAGTTTATTG	TTTCCAGAAGGTATATTTCAGTTTATTG	-			P-0003480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	48	167	0	ENST00000397752.3:c.3021_3028+20del		p.X1007_splice	ENST00000397752	NM_000245.2	1007						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	55	232	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0003371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	80	240	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553245	106553245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			924	55	297	0	ENST00000369096.4:c.1210C>T	p.Pro404Ser	p.P404S	ENST00000369096	NM_001198.3	404	Ccc/Tcc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11097007	11097007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			930	52	463	0	ENST00000344626.4:c.498C>A	p.Asn166Lys	p.N166K	ENST00000344626	NM_003072.3	166	aaC/aaA					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579437	7579437	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000366-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			52	246	177	0	ENST00000269305.4:c.250del	p.Ala84ProfsTer39	p.A84Pfs*39	ENST00000269305	NM_001126112.2	84	Gcc/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004070-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			113	379	209	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004070-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			291	220	402	0	ENST00000374080.3:c.130G>T	p.Gly44Cys	p.G44C	ENST00000374080		44	Ggt/Tgt					NEWRECORD																																																																									
NPM1	0	MSKCC	GRCh37	5	170818332	170818332	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004070-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			667	149	306	0	ENST00000296930.5:c.162G>C	p.Lys54Asn	p.K54N	ENST00000296930	NM_002520.6	54	aaG/aaC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	135	271	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27088729	27088729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	121	411	0	ENST00000324856.7:c.2338C>T	p.Gln780Ter	p.Q780*	ENST00000324856	NM_006015.4	780	Cag/Tag					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29498012	29498012	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			896	175	698	0	ENST00000389048.3:c.1994A>C	p.Lys665Thr	p.K665T	ENST00000389048	NM_004304.4	665	aAa/aCa					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670486	134670486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	131	434	0	ENST00000398015.3:c.397C>A	p.Pro133Thr	p.P133T	ENST00000398015	NM_004441.4	133	Ccc/Acc					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189612175	189612175	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			906	81	476	0	ENST00000264731.3:c.1927C>T	p.Arg643Ter	p.R643*	ENST00000264731	NM_003722.4	643	Cga/Tga					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86633797	86633797	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			623	165	236	0	ENST00000274376.6:c.906A>T	p.Leu302Phe	p.L302F	ENST00000274376	NM_002890.2	302	ttA/ttT					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675424	30675424	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			656	148	454	0	ENST00000376406.3:c.2932G>T	p.Gly978Ter	p.G978*	ENST00000376406	NM_014641.2	978	Gga/Tga					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8499654	8499654	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	204	276	0	ENST00000356435.5:c.2315A>T	p.Asp772Val	p.D772V	ENST00000356435		772	gAt/gTt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431898	49431898	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	74	304	0	ENST00000301067.7:c.9241G>T	p.Glu3081Ter	p.E3081*	ENST00000301067	NM_003482.3	3081	Gaa/Taa					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121434196	121434196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	87	395	0	ENST00000257555.6:c.1087C>A	p.Leu363Met	p.L363M	ENST00000257555		363	Ctg/Atg					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26967506	26967506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	113	353	0	ENST00000381527.3:c.649A>G	p.Ile217Val	p.I217V	ENST00000381527	NM_001260.1	217	Att/Gtt					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2134418	2134418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			861	238	613	2	ENST00000219476.3:c.4195G>A	p.Gly1399Arg	p.G1399R	ENST00000219476	NM_000548.3	1399	Ggg/Agg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89825100	89825100	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	63	294	0	ENST00000389301.3:c.2866C>T	p.Gln956Ter	p.Q956*	ENST00000389301	NM_000135.2	956	Cag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29587385	29587385	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			956	100	344	0	ENST00000358273.4:c.4431-2A>T		p.X1477_splice	ENST00000358273	NM_001042492.2	1477						NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52714705	52714705	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	78	364	0	ENST00000322088.6:c.463T>A	p.Tyr155Asn	p.Y155N	ENST00000322088	NM_014225.5	155	Tac/Aac					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100613371	100613371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	83	414	0	ENST00000308731.7:c.1029G>T	p.Gln343His	p.Q343H	ENST00000308731	NM_000061.2	343	caG/caT					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100615556	100615556	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			748	97	687	0	ENST00000308731.7:c.776G>T	p.Gly259Val	p.G259V	ENST00000308731	NM_000061.2	259	gGg/gTg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123229223	123229223	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1012	122	495	0	ENST00000218089.9:c.3707C>T	p.Pro1236Leu	p.P1236L	ENST00000218089	NM_001042749.1	1236	cCa/cTa					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206647728	206647728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	118	284	0	ENST00000367120.3:c.145delC	p.Arg49AlafsTer5	p.R49Afs*5	ENST00000367120	NM_014002.3	48	Ccc/cc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151900060	151900060	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			929	389	548	5	ENST00000262189.6:c.4051delA	p.Arg1351GlyfsTer23	p.R1351Gfs*23	ENST00000262189	NM_170606.2	1351	Agg/gg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29665152	29665158	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AGCAAGG	AGCAAGG	-			P-0000627-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	84	207	0	ENST00000358273.4:c.6814_6819+1delAGCAAGG		p.X2272_splice	ENST00000358273	NM_001042492.2	2272						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0000929-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	6680	448	1	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579330	7579330	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000929-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	255	426	0	ENST00000269305.4:c.357del	p.Lys120SerfsTer3	p.K120Sfs*3	ENST00000269305	NM_001126112.2	119	gcC/gc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48878187	48878187	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0000929-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			22	116	101	0	ENST00000267163.4:c.137+2T>A		p.X46_splice	ENST00000267163	NM_000321.2	46						NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0004336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	17	395	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49432513	49432513	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	66	348	0	ENST00000301067.7:c.8626C>T	p.Gln2876Ter	p.Q2876*	ENST00000301067	NM_003482.3	2876	Cag/Tag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023604	27023604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	38	320	1	ENST00000324856.7:c.710G>A	p.Gly237Asp	p.G237D	ENST00000324856	NM_006015.4	237	gGc/gAc					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2225896	2225896	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	66	465	0	ENST00000326181.6:c.1688A>T	p.Tyr563Phe	p.Y563F	ENST00000326181	NM_032271.2	563	tAc/tTc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2216520	2216520	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	48	391	0	ENST00000398665.3:c.2164C>T	p.Leu722Phe	p.L722F	ENST00000398665	NM_032482.2	722	Ctc/Ttc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593604	55593604	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	3413	490	2	ENST00000288135.5:c.1670G>C	p.Trp557Ser	p.W557S	ENST00000288135	NM_000222.2	557	tGg/tCg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2106701	2106701	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	123	457	0	ENST00000219476.3:c.705C>G	p.Ser235Arg	p.S235R	ENST00000219476	NM_000548.3	235	agC/agG					NEWRECORD																																																																									
SRSF2	0	MSKCC	GRCh37	17	74732513	74732513	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	57	403	0	ENST00000359995.5:c.396T>A	p.Ser132Arg	p.S132R	ENST00000359995	NM_001195427.1	132	agT/agA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49436010	49436013	+	missense_variant	Missense_Mutation	ONP	CCTC	CCTC	ACTG			P-0003153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	84	334	0	ENST00000301067.7:c.5968_5971delinsCAGT	p.Glu1990_Gly1991delinsGlnCys	p.E1990_G1991delinsQC	ENST00000301067	NM_003482.3	1990	GAGGgt/CAGTgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0001630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	19	1246	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001630-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	39	1248	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			850	143	596	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			570	222	536	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002122-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	116	341	2	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11319313	11319313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002122-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			793	130	398	0	ENST00000361445.4:c.154C>T	p.Leu52Phe	p.L52F	ENST00000361445	NM_004958.3	52	Ctc/Ttc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52682398	52682398	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002122-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			892	197	495	0	ENST00000394830.3:c.775G>T	p.Ala259Ser	p.A259S	ENST00000394830	NM_018313.4	259	Gcc/Tcc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187629648	187629648	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002122-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			801	129	536	0	ENST00000441802.2:c.1334C>G	p.Ala445Gly	p.A445G	ENST00000441802	NM_005245.3	445	gCg/gGg					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176523145	176523145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002122-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			811	118	413	0	ENST00000292408.4:c.1909G>A	p.Val637Ile	p.V637I	ENST00000292408	NM_213647.1	637	Gtc/Atc					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21549433	21549433	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002122-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	32	177	0	ENST00000382592.4:c.2843T>A	p.Ile948Asn	p.I948N	ENST00000382592	NM_014572.2	948	aTc/aAc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	222	383	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164966	47164966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	230	343	0	ENST00000409792.3:c.1160C>G	p.Thr387Ser	p.T387S	ENST00000409792	NM_014159.6	387	aCt/aGt					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186503718	186503718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	158	662	0	ENST00000323963.5:c.395G>A	p.Cys132Tyr	p.C132Y	ENST00000323963		132	tGt/tAt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66535309	66535309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	87	356	1	ENST00000273854.3:c.152G>A	p.Arg51Gln	p.R51Q	ENST00000273854	NM_004439.5	51	cGg/cAg					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63829535	63829535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	141	254	0	ENST00000279873.7:c.1178G>A	p.Cys393Tyr	p.C393Y	ENST00000279873	NM_032199.2	393	tGt/tAt					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112915778	112915778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	104	369	0	ENST00000351677.2:c.1051C>T	p.Arg351Ter	p.R351*	ENST00000351677	NM_002834.3	351	Cga/Tga					NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30128482	30128482	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	354	650	0	ENST00000263025.4:c.900C>G	p.Asp300Glu	p.D300E	ENST00000263025	NM_002746.2	300	gaC/gaG					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39644786	39644786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	259	365	0	ENST00000262039.4:c.2515G>A	p.Val839Met	p.V839M	ENST00000262039	NM_002647.2	839	Gtg/Atg					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2210408	2210408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	78	256	0	ENST00000398665.3:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000398665	NM_032482.2	339	Gag/Aag					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9560898	9560898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	263	408	1	ENST00000353224.5:c.884C>T	p.Pro295Leu	p.P295L	ENST00000353224	NM_177990.2	295	cCg/cTg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573651	48573677	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATGGGAGGCTTCAGGTTAGTCTTATA	GATGGGAGGCTTCAGGTTAGTCTTATA	T			P-0004140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	144	190	0	ENST00000342988.3:c.235_249+12delinsT		p.X79_splice	ENST00000342988	NM_005359.5	79						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	195	401	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46244485	46244485	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs147193304		P-0002869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	44	336	0	ENST00000334344.6:c.2579A>G	p.Asn860Ser	p.N860S	ENST00000334344	NM_152641.2	860	aAt/aGt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41101065	41101065	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	123	262	0	ENST00000373198.4:c.1291A>G	p.Asn431Asp	p.N431D	ENST00000373198	NM_133170.3	431	Aac/Gac					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70360591	70360591	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	124	124	0	ENST00000374080.3:c.6151C>T	p.Gln2051Ter	p.Q2051*	ENST00000374080		2051	Cag/Tag					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242467	55242481	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	CACCAT			P-0002869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	283	277	0	ENST00000275493.2:c.2237_2251delinsCACCAT	p.Glu746_Thr751delinsAlaProSer	p.E746_T751delinsAPS	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gCACCATca					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	642	296	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35860993	35860993	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	191	254	0	ENST00000303115.3:c.122C>G	p.Ser41Ter	p.S41*	ENST00000303115	NM_002185.3	41	tCa/tGa					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	394	231	1	ENST00000206249.3:c.1607T>G	p.Leu536Arg	p.L536R	ENST00000206249	NM_000125.3	536	cTc/cGc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15302902	15302902	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	184	196	0	ENST00000263388.2:c.548G>C	p.Cys183Ser	p.C183S	ENST00000263388	NM_000435.2	183	tGc/tCc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	246	186	0	ENST00000397752.3:c.3028G>T	p.Asp1010Tyr	p.D1010Y	ENST00000397752	NM_000245.2	1010	Gat/Tat					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105817	27105817	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	35	226	0	ENST00000324856.7:c.5428G>C	p.Asp1810His	p.D1810H	ENST00000324856	NM_006015.4	1810	Gac/Cac					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39744041	39744041	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	38	251	0	ENST00000361337.2:c.1669A>C	p.Asn557His	p.N557H	ENST00000361337	NM_003286.2	557	Aac/Cac					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39916531	39916531	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	73	499	0	ENST00000378444.4:c.4472A>G	p.Asn1491Ser	p.N1491S	ENST00000378444	NM_001123385.1	1491	aAt/aGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001801-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			36	161	571	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			26	212	324	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55603410	55603410	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	27	374	0	ENST00000288135.5:c.2766G>T	p.Gln922His	p.Q922H	ENST00000288135	NM_000222.2	922	caG/caT					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94170383	94170384	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0001985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	110	378	0	ENST00000323929.3:c.1885_1886del	p.Gln629AlafsTer9	p.Q629Afs*9	ENST00000323929	NM_005591.3	629	CAg/g					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	129	427	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88679161	88679161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	21	502	0	ENST00000360948.2:c.876G>T	p.Met292Ile	p.M292I	ENST00000360948	NM_001012338.2	292	atG/atT					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41736922	41736922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	31	506	0	ENST00000301178.4:c.637G>A	p.Val213Ile	p.V213I	ENST00000301178	NM_021913.4	213	Gtc/Atc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41556676	41556676	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	37	343	0	ENST00000263253.7:c.3621G>C	p.Glu1207Asp	p.E1207D	ENST00000263253	NM_001429.3	1207	gaG/gaC					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243668558	243668558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000643-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			531	50	240	0	ENST00000263826.5:c.1433G>A	p.Arg478Gln	p.R478Q	ENST00000263826	NM_005465.4	478	cGa/cAa					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553249	106553249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	116	490	0	ENST00000369096.4:c.1214C>T	p.Ser405Leu	p.S405L	ENST00000369096	NM_001198.3	405	tCg/tTg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2134691	2134691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	60	261	0	ENST00000219476.3:c.4468G>A	p.Glu1490Lys	p.E1490K	ENST00000219476	NM_000548.3	1490	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578470	7578473	+	frameshift_variant	Frame_Shift_Del	DEL	CGGG	CGGG	-			P-0004613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	391	431	0	ENST00000269305.4:c.457_460del	p.Pro153AlafsTer16	p.P153Afs*16	ENST00000269305	NM_001126112.2	153	CCCGgc/gc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242465	55242481	+	protein_altering_variant	In_Frame_Del	DEL	GGAATTAAGAGAAGCAA	GGAATTAAGAGAAGCAA	AATTC			P-0004613-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	554	384	1	ENST00000275493.2:c.2235_2251delinsAATTC	p.Glu746_Thr751delinsIlePro	p.E746_T751delinsIP	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCAAca/aaAATTCca					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11169355	11169355	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	40	466	0	ENST00000361445.4:c.7520A>G	p.Lys2507Arg	p.K2507R	ENST00000361445	NM_004958.3	2507	aAg/aGg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183748	10183748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	85	318	0	ENST00000256474.2:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000256474	NM_000551.3	73	Cag/Tag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47079174	47079174	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0004507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	30	510	0	ENST00000409792.3:c.7332T>G	p.Tyr2444Ter	p.Y2444*	ENST00000409792	NM_014159.6	2444	taT/taG					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52637669	52637669	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	55	449	0	ENST00000394830.3:c.2647G>T	p.Gly883Ter	p.G883*	ENST00000394830	NM_018313.4	883	Gga/Tga					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16237595	16237595	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0002866-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	55	291	0	ENST00000375759.3:c.1043-1G>C		p.X348_splice	ENST00000375759	NM_015001.2	348						NEWRECORD																																																																									
FGF4	0	MSKCC	GRCh37	11	69588144	69588144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002866-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	175	507	2	ENST00000168712.1:c.554G>A	p.Gly185Glu	p.G185E	ENST00000168712	NM_002007.2	185	gGg/gAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0000814-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	100	509	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49405953	49405953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000814-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	68	391	0	ENST00000418115.1:c.185G>T	p.Gly62Val	p.G62V	ENST00000418115	NM_001664.2	62	gGg/gTg					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	756662	756662	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002393-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			834	187	667	0	ENST00000314574.4:c.166A>G	p.Ser56Gly	p.S56G	ENST00000314574	NM_005433.3	56	Agt/Ggt					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176696721	176696721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002393-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			737	176	465	0	ENST00000439151.2:c.5422del	p.His1808ThrfsTer13	p.H1808Tfs*13	ENST00000439151	NM_022455.4	1808	Cac/ac					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138196093	138196093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	65	456	0	ENST00000237289.4:c.407G>T	p.Arg136Leu	p.R136L	ENST00000237289	NM_001270507.1	136	cGc/cTc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061797	38061797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003028-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	60	529	1	ENST00000250448.2:c.192C>A	p.Phe64Leu	p.F64L	ENST00000250448	NM_004496.3	64	ttC/ttA					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0002894-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	332	372	5	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851754	134851754	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56396912		P-0002947-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			674	109	500	0	ENST00000398015.3:c.1160C>T	p.Thr387Met	p.T387M	ENST00000398015	NM_004441.4	387	aCg/aTg					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131923343	131923343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002947-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	72	254	0	ENST00000265335.6:c.846G>A	p.Met282Ile	p.M282I	ENST00000265335		282	atG/atA					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41726735	41726735	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000260-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			264	40	272	0	ENST00000301178.4:c.280G>A	p.Asp94Asn	p.D94N	ENST00000301178	NM_021913.4	94	Gat/Aat					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30050679	30050679	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000581-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	612	352	0	ENST00000338641.4:c.481G>T	p.Gly161Ter	p.G161*	ENST00000338641	NM_000268.3	161	Gga/Tga					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575447	64575466	+	frameshift_variant	Frame_Shift_Del	DEL	CCCATTGGGCCCAAACACTA	CCCATTGGGCCCAAACACTA	-			P-0000581-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	247	360	0	ENST00000337652.1:c.566_585delTAGTGTTTGGGCCCAATGGG	p.Val189GlyfsTer5	p.V189Gfs*5	ENST00000337652	NM_130803.2	189	gTAGTGTTTGGGCCCAATGGG/g					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001272-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	347	425	0	ENST00000269305.4:c.833delC	p.Pro278LeufsTer67	p.P278Lfs*67	ENST00000269305	NM_001126112.2	278	cCt/ct					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41215921	41215921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001272-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	219	434	0	ENST00000357654.3:c.5122G>C	p.Ala1708Pro	p.A1708P	ENST00000357654	NM_007294.3	1708	Gcg/Ccg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	108	111	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191552	10191552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	103	180	0	ENST00000256474.2:c.545G>T	p.Arg182Met	p.R182M	ENST00000256474	NM_000551.3	182	aGg/aTg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	241	240	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099341	27099341	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	118	296	0	ENST00000324856.7:c.3578A>C	p.Asp1193Ala	p.D1193A	ENST00000324856	NM_006015.4	1193	gAt/gCt					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29416462	29416462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	336	359	0	ENST00000389048.3:c.4491C>G	p.Asn1497Lys	p.N1497K	ENST00000389048	NM_004304.4	1497	aaC/aaG					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32456489	32456489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			44	39	58	0	ENST00000332351.3:c.403C>G	p.Pro135Ala	p.P135A	ENST00000332351	NM_024426.4	135	Ccg/Gcg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47028754	47028754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	148	346	0	ENST00000329236.7:c.58G>A	p.Asp20Asn	p.D20N	ENST00000329236	NM_001204466.1	20	Gac/Aac					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41243882	41243894	+	frameshift_variant	Frame_Shift_Del	DEL	CTCTTCATCCTCA	CTCTTCATCCTCA	-			P-0002237-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	239	256	0	ENST00000357654.3:c.3654_3666del	p.Glu1219PhefsTer12	p.E1219Ffs*12	ENST00000357654	NM_007294.3	1218	agTGAGGATGAAGAG/ag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002506-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			537	40	213	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002506-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			820	219	418	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0002506-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			462	59	232	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47098328	47098328	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002506-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			680	50	323	0	ENST00000409792.3:c.6946A>G	p.Thr2316Ala	p.T2316A	ENST00000409792	NM_014159.6	2316	Act/Gct					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148526886	148526886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000210-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	26	507	0	ENST00000320356.2:c.418G>A	p.Asp140Asn	p.D140N	ENST00000320356	NM_004456.4	140	Gat/Aat					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41573533	41573533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000210-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			850	98	599	0	ENST00000263253.7:c.5818C>T	p.Arg1940Cys	p.R1940C	ENST00000263253	NM_001429.3	1940	Cgc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	66	429	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			529	392	516	2	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944998	31944998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			690	149	241	0	ENST00000340398.3:c.103G>A	p.Gly35Arg	p.G35R	ENST00000340398	NM_001013699.2	35	Ggg/Agg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49033934	49033934	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	95	313	1	ENST00000267163.4:c.2071G>T	p.Glu691Ter	p.E691*	ENST00000267163	NM_000321.2	691	Gag/Tag					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			821	71	338	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174758	112174761	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-			P-0001107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	44	277	0	ENST00000257430.4:c.3467_3470del	p.Glu1156GlyfsTer8	p.E1156Gfs*8	ENST00000257430	NM_000038.5	1156	gAAGAg/gg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001107-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	68	300	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779482	3779482	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001608-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	211	478	0	ENST00000262367.5:c.5566C>T	p.Gln1856Ter	p.Q1856*	ENST00000262367	NM_004380.2	1856	Cag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			144	278	357	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15272408	15272408	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142007575		P-0001994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	20	374	0	ENST00000263388.2:c.6031G>A	p.Val2011Ile	p.V2011I	ENST00000263388	NM_000435.2	2011	Gta/Ata					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0001932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	164	226	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17942566	17942566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	53	164	0	ENST00000458235.1:c.2722G>A	p.Gly908Ser	p.G908S	ENST00000458235	NM_000215.3	908	Ggc/Agc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2019	371	255	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176700715	176700715	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	219	281	0	ENST00000439151.2:c.5552A>G	p.Gln1851Arg	p.Q1851R	ENST00000439151	NM_022455.4	1851	cAa/cGa					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13978862	13978862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	94	325	0	ENST00000405192.2:c.245A>G	p.His82Arg	p.H82R	ENST00000405192	NM_001163147.1	82	cAt/cGt					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90949294	90949294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			962	89	307	0	ENST00000265433.3:c.2194C>A	p.Gln732Lys	p.Q732K	ENST00000265433	NM_002485.4	732	Caa/Aaa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245961	46245961	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			636	177	319	0	ENST00000334344.6:c.4055A>G	p.Asp1352Gly	p.D1352G	ENST00000334344	NM_152641.2	1352	gAt/gGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577035	7577035	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	242	336	0	ENST00000269305.4:c.903delA	p.Ser303AlafsTer42	p.S303Afs*42	ENST00000269305	NM_001126112.2	301	ccA/cc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1296	295	336	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	993	329	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	216	303	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	1373	383	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55156602	55156602	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	42	311	0	ENST00000257290.5:c.3003G>T	p.Lys1001Asn	p.K1001N	ENST00000257290	NM_006206.4	1001	aaG/aaT					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55086984	55086984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1273	96	302	0	ENST00000275493.2:c.14G>C	p.Gly5Ala	p.G5A	ENST00000275493	NM_005228.3	5	gGg/gCg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692890	89692890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	194	162	0	ENST00000371953.3:c.374A>C	p.Lys125Thr	p.K125T	ENST00000371953	NM_000314.4	125	aAa/aCa					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21563434	21563434	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			904	114	613	0	ENST00000382592.4:c.485T>A	p.Leu162His	p.L162H	ENST00000382592	NM_014572.2	162	cTc/cAc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	244	496	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17350515	17350515	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	134	617	2	ENST00000375499.3:c.595T>G	p.Tyr199Asp	p.Y199D	ENST00000375499	NM_003000.2	199	Tac/Gac					NEWRECORD																																																																									
TMEM127	0	MSKCC	GRCh37	2	96930957	96930957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	48	531	0	ENST00000258439.3:c.163C>T	p.His55Tyr	p.H55Y	ENST00000258439	NM_001193304.2	55	Cac/Tac					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001166-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			644	44	874	1	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46285585	46285585	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			817	310	619	0	ENST00000334344.6:c.4945G>T	p.Val1649Phe	p.V1649F	ENST00000334344	NM_152641.2	1649	Gtt/Ttt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	400	934	0	ENST00000269305.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000269305	NM_001126112.2	274	Gtt/Ctt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55221785	55221786	+	missense_variant	Missense_Mutation	DNP	AT	AT	GA			P-0000316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	691	763	0	ENST00000275493.2:c.829_830delATinsGA	p.Met277Glu	p.M277E	ENST00000275493	NM_005228.3	277	ATg/GAg					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0000154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			851	535	376	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			529	379	269	0	ENST00000345146.2:c.394C>G	p.Arg132Gly	p.R132G	ENST00000345146	NM_005896.2	132	Cgt/Ggt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55225421	55225421	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			706	98	247	0	ENST00000275493.2:c.1273A>C	p.Ile425Leu	p.I425L	ENST00000275493	NM_005228.3	425	Atc/Ctc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151859870	151859870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	168	187	0	ENST00000262189.6:c.10792C>A	p.Pro3598Thr	p.P3598T	ENST00000262189	NM_170606.2	3598	Cca/Aca					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18715794	18715794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	62	253	0	ENST00000266497.5:c.3625A>G	p.Thr1209Ala	p.T1209A	ENST00000266497		1209	Aca/Gca					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207092	1207092	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	123	214	0	ENST00000326873.7:c.180C>G	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/taG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579352	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGACG	CCCAGACG	ACCA			P-0003293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	96	180	0	ENST00000269305.4:c.328_335delinsTGGT	p.Arg110TrpfsTer12	p.R110Wfs*12	ENST00000269305	NM_001126112.2	110	CGTCTGGGc/TGGTc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000898-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			214	17	375	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000898-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	21	494	0	ENST00000304494.5:c.95T>A	p.Leu32Gln	p.L32Q	ENST00000304494	NM_000077.4	32	cTg/cAg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000898-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	21	494	0	ENST00000304494.5:c.95T>A	p.Leu32Gln	p.L32Q	ENST00000304494	NM_000077.4	32	cTg/cAg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18658326	18658326	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000898-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	14	364	0	ENST00000266497.5:c.3131C>T	p.Ser1044Leu	p.S1044L	ENST00000266497		1044	tCg/tTg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40827909	40827909	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000898-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	11	377	0	ENST00000373198.4:c.2519C>T	p.Ser840Phe	p.S840F	ENST00000373198	NM_133170.3	840	tCt/tTt					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32180367	32180367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	63	439	0	ENST00000375023.3:c.2564G>A	p.Arg855His	p.R855H	ENST00000375023	NM_004557.3	855	cGc/cAc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133248854	133248854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	101	695	0	ENST00000320574.5:c.1741G>A	p.Ala581Thr	p.A581T	ENST00000320574	NM_006231.2	581	Gcc/Acc					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412913	49412913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	54	840	0	ENST00000418115.1:c.110C>T	p.Thr37Ile	p.T37I	ENST00000418115	NM_001664.2	37	aCa/aTa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16254906	16254906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	139	456	0	ENST00000375759.3:c.2171G>A	p.Arg724Gln	p.R724Q	ENST00000375759	NM_015001.2	724	cGa/cAa					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65301854	65301854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	50	424	0	ENST00000342505.4:c.3185C>T	p.Ser1062Phe	p.S1062F	ENST00000342505	NM_002227.2	1062	tCt/tTt					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65306959	65306959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	15	642	0	ENST00000342505.4:c.2618G>A	p.Arg873His	p.R873H	ENST00000342505	NM_002227.2	873	cGc/cAc					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65335079	65335079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			191	43	661	0	ENST00000342505.4:c.562G>A	p.Glu188Lys	p.E188K	ENST00000342505	NM_002227.2	188	Gag/Aag					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156849887	156849887	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	20	602	0	ENST00000524377.1:c.2143G>A	p.Val715Met	p.V715M	ENST00000524377	NM_002529.3	715	Gtg/Atg					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26029144	26029144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	39	670	1	ENST00000435504.4:c.206G>A	p.Gly69Asp	p.G69D	ENST00000435504		69	gGc/gAc					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99193507	99193507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	182	524	2	ENST00000074304.5:c.2702G>A	p.Arg901His	p.R901H	ENST00000074304	NM_001134224.1	901	cGt/cAt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47103828	47103828	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	102	600	0	ENST00000409792.3:c.6118C>T	p.Arg2040Ter	p.R2040*	ENST00000409792	NM_014159.6	2040	Cga/Tga					NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187521114	187521114	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs760053140		P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	190	507	3	ENST00000441802.2:c.12041C>T	p.Thr4014Met	p.T4014M	ENST00000441802	NM_005245.3	4014	aCg/aTg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187629339	187629339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202126944		P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	54	662	0	ENST00000441802.2:c.1643G>A	p.Arg548His	p.R548H	ENST00000441802	NM_005245.3	548	cGc/cAc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86645172	86645172	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	43	435	0	ENST00000274376.6:c.1244A>T	p.Tyr415Phe	p.Y415F	ENST00000274376	NM_002890.2	415	tAt/tTt					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176721723	176721723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	168	457	0	ENST00000439151.2:c.7354G>A	p.Ala2452Thr	p.A2452T	ENST00000439151	NM_022455.4	2452	Gct/Act					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50367275	50367275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			439	68	454	1	ENST00000331340.3:c.82G>A	p.Asp28Asn	p.D28N	ENST00000331340	NM_006060.4	28	Gat/Aat					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43623686	43623686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	12	559	0	ENST00000355710.3:c.3314C>T	p.Ala1105Val	p.A1105V	ENST00000355710	NM_020975.4	1105	gCg/gTg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108206633	108206633	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	111	687	0	ENST00000278616.4:c.8213T>A	p.Leu2738Ter	p.L2738*	ENST00000278616	NM_000051.3	2738	tTa/tAa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245945	46245945	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	88	539	0	ENST00000334344.6:c.4039C>T	p.Gln1347Ter	p.Q1347*	ENST00000334344	NM_152641.2	1347	Caa/Taa					NEWRECORD																																																																									
SMARCD1	0	MSKCC	GRCh37	12	50481162	50481162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	63	589	0	ENST00000394963.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000394963	NM_003076.4	183	cGa/cAa					NEWRECORD																																																																									
RAD51	0	MSKCC	GRCh37	15	41001222	41001222	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	50	710	0	ENST00000267868.3:c.344-1G>A		p.X115_splice	ENST00000267868	NM_002875.4	115						NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3831226	3831226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	75	542	0	ENST00000262367.5:c.1655C>T	p.Pro552Leu	p.P552L	ENST00000262367	NM_004380.2	552	cCg/cTg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89805671	89805671	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201886956		P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	149	568	0	ENST00000389301.3:c.4037C>T	p.Ala1346Val	p.A1346V	ENST00000389301	NM_000135.2	1346	gCg/gTg					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78919545	78919545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	131	533	0	ENST00000306801.3:c.3104C>T	p.Thr1035Met	p.T1035M	ENST00000306801	NM_020761.2	1035	aCg/aTg					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3121109	3121109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	25	589	0	ENST00000078429.4:c.1012C>T	p.Arg338Cys	p.R338C	ENST00000078429	NM_002067.2	338	Cgc/Tgc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39937109	39937109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	179	614	2	ENST00000378444.4:c.74C>T	p.Ala25Val	p.A25V	ENST00000378444	NM_001123385.1	25	gCg/gTg					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53226022	53226022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	187	685	3	ENST00000375401.3:c.2827C>T	p.Arg943Ter	p.R943*	ENST00000375401	NM_004187.3	943	Cga/Tga					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48026590	48026590	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	83	481	0	ENST00000234420.5:c.1468del	p.Glu490LysfsTer2	p.E490Kfs*2	ENST00000234420	NM_000179.2	490	Gaa/aa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720856	89720875	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	ACTTTTCTCCAAATTTTAAG	ACTTTTCTCCAAATTTTAAG	-			P-0002903-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	32	274	0	ENST00000371953.3:c.1007_1026del	p.Tyr336CysfsTer18	p.Y336Cfs*18	ENST00000371953	NM_000314.4	336	tACTTTTCTCCAAATTTTAAG/t					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001496-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	131	430	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11144146	11144146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001496-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	77	353	0	ENST00000344626.4:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000344626	NM_003072.3	1243	Cgg/Tgg					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241661212	241661212	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	110	323	0	ENST00000366560.3:c.1449G>T	p.Lys483Asn	p.K483N	ENST00000366560	NM_000143.3	483	aaG/aaT					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212483979	212483979	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	80	357	0	ENST00000342788.4:c.2224G>C	p.Glu742Gln	p.E742Q	ENST00000342788	NM_005235.2	742	Gaa/Caa					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212812191	212812191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	99	319	0	ENST00000342788.4:c.385T>A	p.Phe129Ile	p.F129I	ENST00000342788	NM_005235.2	129	Ttt/Att					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670615	134670615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	86	386	0	ENST00000398015.3:c.526G>T	p.Ala176Ser	p.A176S	ENST00000398015	NM_004441.4	176	Gct/Tct					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20481637	20481637	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	54	275	0	ENST00000346618.3:c.706A>T	p.Lys236Ter	p.K236*	ENST00000346618	NM_001949.4	236	Aaa/Taa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50444360	50444360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	47	212	1	ENST00000331340.3:c.290G>T	p.Arg97Met	p.R97M	ENST00000331340	NM_006060.4	97	aGg/aTg					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81335719	81335720	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	52	250	1	ENST00000222390.5:c.1640_1641delinsTT	p.Trp547Phe	p.W547F	ENST00000222390	NM_000601.4	547	tGG/tTT					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971114	21971114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	27	177	0	ENST00000304494.5:c.244G>T	p.Val82Leu	p.V82L	ENST00000304494	NM_000077.4	82	Gtg/Ttg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971114	21971114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	27	177	0	ENST00000304494.5:c.244G>T	p.Val82Leu	p.V82L	ENST00000304494	NM_000077.4	82	Gtg/Ttg					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971114	21971114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	27	177	0	ENST00000304494.5:c.244G>T	p.Val82Leu	p.V82L	ENST00000304494	NM_000077.4	82	Gtg/Ttg					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112479	115112479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	73	234	2	ENST00000257566.3:c.1261C>T	p.Arg421Trp	p.R421W	ENST00000257566	NM_016569.3	421	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578257	7578258	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	61	388	0	ENST00000269305.4:c.591_592delinsTT	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	197	gtGGaa/gtTTaa					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37627316	37627316	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	74	280	0	ENST00000447079.4:c.1231G>T	p.Ala411Ser	p.A411S	ENST00000447079	NM_015083.1	411	Gct/Tct					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	77	288	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29092889	29092889	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	80	358	0	ENST00000328354.6:c.1095G>T	p.Lys365Asn	p.K365N	ENST00000328354	NM_007194.3	365	aaG/aaT					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39931748	39931748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	72	503	0	ENST00000378444.4:c.2851G>A	p.Asp951Asn	p.D951N	ENST00000378444	NM_001123385.1	951	Gat/Aat					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47028850	47028850	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	59	367	0	ENST00000329236.7:c.154G>T	p.Glu52Ter	p.E52*	ENST00000329236	NM_001204466.1	52	Gag/Tag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	37	321	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68867274	68867274	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	83	296	0	ENST00000261769.5:c.2521del	p.Glu841LysfsTer5	p.E841Kfs*5	ENST00000261769	NM_004360.3	841	Gaa/aa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720849	89720849	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	118	161	0	ENST00000371953.3:c.1001del	p.Asn334ThrfsTer10	p.N334Tfs*10	ENST00000371953	NM_000314.4	334	Aac/ac					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0000129-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	454	157	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000797-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			563	47	405	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174025	112174025	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	37	242	0	ENST00000257430.4:c.2734T>G	p.Leu912Val	p.L912V	ENST00000257430	NM_000038.5	912	Tta/Gta					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439253	52439253	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	51	136	0	ENST00000460680.1:c.989del	p.Asn330ThrfsTer5	p.N330Tfs*5	ENST00000460680	NM_004656.3	330	aAc/ac					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0003713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	84	271	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66230813	66230813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	27	442	0	ENST00000273854.3:c.2158G>A	p.Asp720Asn	p.D720N	ENST00000273854	NM_004439.5	720	Gat/Aat					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212566700	212566700	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	40	292	0	ENST00000342788.4:c.1481A>C	p.Glu494Ala	p.E494A	ENST00000342788	NM_005235.2	494	gAa/gCa					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143045890	143045890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	27	286	0	ENST00000262992.4:c.1744C>T	p.Pro582Ser	p.P582S	ENST00000262992	NM_001101669.1	582	Ccc/Tcc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88472483	88472483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	36	370	0	ENST00000360948.2:c.2072T>C	p.Leu691Pro	p.L691P	ENST00000360948	NM_001012338.2	691	cTg/cCg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098473	11098473	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	30	210	0	ENST00000344626.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000344626	NM_003072.3	331	Cag/Tag					NEWRECORD																																																																									
CALR	0	MSKCC	GRCh37	19	13054584	13054586	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0003713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	82	628	0	ENST00000316448.5:c.1116_1118delAGA	p.Glu372del	p.E372del	ENST00000316448	NM_004343.3	371	GAA/-					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0003501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	203	457	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29687566	29687566	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144178015		P-0003501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	251	452	1	ENST00000358273.4:c.8222C>T	p.Thr2741Met	p.T2741M	ENST00000358273	NM_001042492.2	2741	aCg/aTg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	66	425	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138374244	138374244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	193	683	0	ENST00000289153.2:c.3200A>T	p.Asp1067Val	p.D1067V	ENST00000289153	NM_006219.2	1067	gAc/gTc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117724379	117724379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	27	470	0	ENST00000368508.3:c.500G>T	p.Arg167Leu	p.R167L	ENST00000368508	NM_002944.2	167	cGa/cTa					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	441055	441055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	83	489	0	ENST00000399788.2:c.1703G>A	p.Arg568His	p.R568H	ENST00000399788	NM_001042603.1	568	cGt/cAt					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12022652	12022652	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200525003		P-0000867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	27	358	0	ENST00000396373.4:c.758C>T	p.Pro253Leu	p.P253L	ENST00000396373	NM_001987.4	253	cCg/cTg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67662370	67662370	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	17	710	0	ENST00000264010.4:c.1616A>T	p.Asp539Val	p.D539V	ENST00000264010	NM_006565.3	539	gAc/gTc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509447	106509447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001558-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			397	53	456	0	ENST00000359195.3:c.1441G>A	p.Val481Ile	p.V481I	ENST00000359195	NM_002649.2	481	Gtc/Atc					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98239082	98239082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001558-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			253	19	468	0	ENST00000331920.6:c.1561G>A	p.Ala521Thr	p.A521T	ENST00000331920	NM_000264.3	521	Gcc/Acc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	222	914	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100998688	100998688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	56	1501	0	ENST00000325455.5:c.1114G>A	p.Asp372Asn	p.D372N	ENST00000325455	NM_001202474.3	372	Gac/Aac					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10267145	10267145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	75	907	0	ENST00000340748.4:c.1273G>A	p.Gly425Ser	p.G425S	ENST00000340748		425	Ggc/Agc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	35	239	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	27	151	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115120844	115120863	+	frameshift_variant	Frame_Shift_Del	DEL	GAGCGCCGCCGCGCCGTTGG	GAGCGCCGCCGCGCCGTTGG	-			P-0004165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	50	141	0	ENST00000257566.3:c.143_162del	p.Pro48LeufsTer56	p.P48Lfs*56	ENST00000257566	NM_016569.3	48	cCCAACGGCGCGGCGGCGCTC/c					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	132	270	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098806	178098806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	89	501	1	ENST00000397062.3:c.239C>G	p.Thr80Arg	p.T80R	ENST00000397062	NM_006164.4	80	aCa/aGa					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99155357	99155357	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	55	250	0	ENST00000074304.5:c.583G>T	p.Val195Phe	p.V195F	ENST00000074304	NM_001134224.1	195	Gtt/Ttt					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430554	181430554	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	131	233	0	ENST00000325404.1:c.406G>C	p.Gly136Arg	p.G136R	ENST00000325404	NM_003106.3	136	Ggc/Cgc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187627953	187627953	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	109	550	0	ENST00000441802.2:c.3029T>C	p.Val1010Ala	p.V1010A	ENST00000441802	NM_005245.3	1010	gTt/gCt					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93982095	93982095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	40	563	0	ENST00000369303.4:c.1370G>A	p.Arg457Gln	p.R457Q	ENST00000369303	NM_004440.3	457	cGg/cAg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117680998	117680998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	36	349	0	ENST00000368508.3:c.3622C>A	p.His1208Asn	p.H1208N	ENST00000368508	NM_002944.2	1208	Cac/Aac					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151880135	151880135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	77	414	1	ENST00000262189.6:c.5189G>T	p.Arg1730Leu	p.R1730L	ENST00000262189	NM_170606.2	1730	cGt/cTt					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371967	55371967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	58	153	0	ENST00000297316.4:c.657G>T	p.Leu219Phe	p.L219F	ENST00000297316	NM_022454.3	219	ttG/ttT					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135786002	135786002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	52	185	0	ENST00000298552.3:c.1219G>T	p.Val407Leu	p.V407L	ENST00000298552	NM_001162426.1	407	Gtg/Ttg					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32414253	32414253	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	54	367	0	ENST00000332351.3:c.1298C>G	p.Ser433Cys	p.S433C	ENST00000332351	NM_024426.4	433	tCt/tGt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108121538	108121538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	44	374	0	ENST00000278616.4:c.1346G>A	p.Gly449Glu	p.G449E	ENST00000278616	NM_000051.3	449	gGg/gAg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18762544	18762544	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	36	303	0	ENST00000266497.5:c.4040T>A	p.Val1347Glu	p.V1347E	ENST00000266497		1347	gTg/gAg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49415908	49415908	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	33	325	0	ENST00000301067.7:c.16439A>G	p.Asn5480Ser	p.N5480S	ENST00000301067	NM_003482.3	5480	aAc/aGc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49440545	49440545	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	100	383	0	ENST00000301067.7:c.4265G>A	p.Trp1422Ter	p.W1422*	ENST00000301067	NM_003482.3	1422	tGg/tAg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444738	49444738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	82	286	0	ENST00000301067.7:c.2728C>T	p.Pro910Ser	p.P910S	ENST00000301067	NM_003482.3	910	Cct/Tct					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89347116	89347116	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	52	493	0	ENST00000301030.4:c.5834A>G	p.Glu1945Gly	p.E1945G	ENST00000301030	NM_001256183.1	1945	gAg/gGg					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022877	31022877	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	41	309	1	ENST00000375687.4:c.2362G>T	p.Glu788Ter	p.E788*	ENST00000375687	NM_015338.5	788	Gaa/Taa					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42794409	42794410	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0003321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	87	527	0	ENST00000575354.2:c.1489_1490delinsAG	p.Pro497Ser	p.P497S	ENST00000575354	NM_015125.3	497	CCt/AGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001577-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	148	352	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0001577-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	272	658	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106545597	106545597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001577-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	231	492	0	ENST00000359195.3:c.3074A>G	p.Asn1025Ser	p.N1025S	ENST00000359195	NM_002649.2	1025	aAc/aGc					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18446900	18446900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			999	272	501	0	ENST00000266497.5:c.985C>A	p.Pro329Thr	p.P329T	ENST00000266497		329	Ccc/Acc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41558721	41558753	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTTAGTACAATAAATAAAGAACAATTTTCCAA	CCTTAGTACAATAAATAAAGAACAATTTTCCAA	-			P-0000394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			990	69	623	0	ENST00000263253.7:c.3672-6_3698delCCTTAGTACAATAAATAAAGAACAATTTTCCAA		p.X1224_splice	ENST00000263253	NM_001429.3	1224						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	157	260	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	215	267	1	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134885788	134885788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	128	259	1	ENST00000398015.3:c.1699C>T	p.Arg567Trp	p.R567W	ENST00000398015	NM_004441.4	567	Cgg/Tgg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142215865	142215865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	35	191	0	ENST00000350721.4:c.5728C>T	p.Leu1910Phe	p.L1910F	ENST00000350721	NM_001184.3	1910	Ctc/Ttc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174241	112174241	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	143	261	0	ENST00000257430.4:c.2950G>T	p.Glu984Ter	p.E984*	ENST00000257430	NM_000038.5	984	Gaa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175282	112175282	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	71	264	0	ENST00000257430.4:c.3991A>T	p.Arg1331Ter	p.R1331*	ENST00000257430	NM_000038.5	1331	Aga/Tga					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135796795	135796795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	75	292	0	ENST00000298552.3:c.692C>T	p.Pro231Leu	p.P231L	ENST00000298552	NM_001162426.1	231	cCg/cTg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133241024	133241024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	56	299	0	ENST00000320574.5:c.2493G>A	p.Met831Ile	p.M831I	ENST00000320574	NM_006231.2	831	atG/atA					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42794986	42794986	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	95	255	0	ENST00000575354.2:c.2066A>C	p.Lys689Thr	p.K689T	ENST00000575354	NM_015125.3	689	aAg/aCg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40747062	40747062	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	63	270	0	ENST00000373198.4:c.3020A>G	p.Asn1007Ser	p.N1007S	ENST00000373198	NM_133170.3	1007	aAc/aGc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133238255	133238275	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATTGGTGAAGCCTTCCTGAG	CATTGGTGAAGCCTTCCTGAG	-			P-0004084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	33	196	0	ENST00000320574.5:c.2707-5_2722delCTCAGGAAGGCTTCACCAATG		p.X903_splice	ENST00000320574	NM_006231.2	903						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0000195-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	99	399	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	273	314	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241671916	241671916	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	149	324	1	ENST00000366560.3:c.725T>G	p.Leu242Arg	p.L242R	ENST00000366560	NM_000143.3	242	cTt/cGt					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133252043	133252043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	28	309	0	ENST00000320574.5:c.1167C>G	p.Phe389Leu	p.F389L	ENST00000320574	NM_006231.2	389	ttC/ttG					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30325762	30325762	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	54	215	0	ENST00000322652.5:c.1960C>T	p.Arg654Ter	p.R654*	ENST00000322652	NM_015355.2	654	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	216	350	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	80	289	2	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55960993	55960993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	158	313	0	ENST00000263923.4:c.2947C>T	p.Leu983Phe	p.L983F	ENST00000263923	NM_002253.2	983	Ctc/Ttc					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110250242	110250242	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	81	260	0	ENST00000374672.4:c.433C>A	p.Pro145Thr	p.P145T	ENST00000374672	NM_004235.4	145	Ccc/Acc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2194572	2194572	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	153	409	0	ENST00000398665.3:c.647A>G	p.Tyr216Cys	p.Y216C	ENST00000398665	NM_032482.2	216	tAc/tGc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11132442	11132442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	60	437	0	ENST00000344626.4:c.2658G>A	p.Met886Ile	p.M886I	ENST00000344626	NM_003072.3	886	atG/atA					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11144442	11144442	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	38	294	0	ENST00000344626.4:c.3775-1G>A		p.X1259_splice	ENST00000344626	NM_003072.3	1259						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597401	10597402	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0003240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	184	367	0	ENST00000171111.5:c.1801_1802delinsT	p.Arg601Ter	p.R601*	ENST00000171111	NM_203500.1	601	CGg/Tg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			902	122	370	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	106	190	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86627164	86627164	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	29	221	0	ENST00000274376.6:c.540-1G>A		p.X180_splice	ENST00000274376	NM_002890.2	180						NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128829243	128829243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	35	223	0	ENST00000249373.3:c.251C>T	p.Pro84Leu	p.P84L	ENST00000249373	NM_005631.4	84	cCc/cTc					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12043910	12043910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	132	326	0	ENST00000396373.4:c.1289G>A	p.Arg430Gln	p.R430Q	ENST00000396373	NM_001987.4	430	cGa/cAa					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15272000	15272000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	50	72	0	ENST00000263388.2:c.6439G>A	p.Gly2147Ser	p.G2147S	ENST00000263388	NM_000435.2	2147	Ggt/Agt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914091	32914094	+	frameshift_variant	Frame_Shift_Del	DEL	ACAG	ACAG	-			P-0000979-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	60	194	0	ENST00000380152.3:c.5603_5606delACAG	p.Asp1868ValfsTer5	p.D1868Vfs*5	ENST00000380152		1867	ACAGac/ac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			840	304	551	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	274	487	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	167	385	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0001658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			876	173	618	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	283	570	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89869730	89869740	+	frameshift_variant	Frame_Shift_Del	DEL	AACAAACATTT	AACAAACATTT	-			P-0001658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			829	134	724	0	ENST00000389301.3:c.719_729del	p.Gln240LeufsTer17	p.Q240Lfs*17	ENST00000389301	NM_000135.2	240	cAAATGTTTGTT/c					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	178	314	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38285455	38285455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	270	491	0	ENST00000425967.3:c.698G>C	p.Arg233Thr	p.R233T	ENST00000425967	NM_001174067.1	233	aGa/aCa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8471086	8471086	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0001001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	59	302	0	ENST00000356435.5:c.3414-1G>C		p.X1138_splice	ENST00000356435		1138						NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108202684	108202684	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	110	294	1	ENST00000278616.4:c.7708G>T	p.Glu2570Ter	p.E2570*	ENST00000278616	NM_000051.3	2570	Gaa/Taa					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	365	508	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga					NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	231	242	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29592251	29592251	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	143	397	0	ENST00000358273.4:c.4729C>T	p.Gln1577Ter	p.Q1577*	ENST00000358273	NM_001042492.2	1577	Cag/Tag					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64572220	64572238	+	frameshift_variant	Frame_Shift_Del	DEL	CTCGCCCCACGGCTCCTCG	CTCGCCCCACGGCTCCTCG	-			P-0001001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			83	16	103	0	ENST00000337652.1:c.1416_1434del	p.Glu473LysfsTer85	p.E473Kfs*85	ENST00000337652	NM_130803.2	472	gcCGAGGAGCCGTGGGGCGAG/gc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	95	452	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
RHEB	0	MSKCC	GRCh37	7	151216551	151216551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	41	165	0	ENST00000262187.5:c.47C>T	p.Ser16Phe	p.S16F	ENST00000262187	NM_005614.3	16	tCt/tTt					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29416586	29416586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	120	317	0	ENST00000389048.3:c.4367C>A	p.Pro1456His	p.P1456H	ENST00000389048	NM_004304.4	1456	cCc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154981	112154981	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	109	376	0	ENST00000257430.4:c.1252G>T	p.Glu418Ter	p.E418*	ENST00000257430	NM_000038.5	418	Gaa/Taa					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128751001	128751001	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	50	351	0	ENST00000377970.2:c.538G>T	p.Ala180Ser	p.A180S	ENST00000377970	NM_002467.4	180	Gcc/Tcc					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94219229	94219229	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	56	308	0	ENST00000323929.3:c.175G>T	p.Gly59Cys	p.G59C	ENST00000323929	NM_005591.3	59	Ggt/Tgt					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94219241	94219241	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	48	297	0	ENST00000323929.3:c.163A>C	p.Ile55Leu	p.I55L	ENST00000323929	NM_005591.3	55	Att/Ctt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68844101	68844101	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	50	380	0	ENST00000261769.5:c.689T>C	p.Leu230Pro	p.L230P	ENST00000261769	NM_004360.3	230	cTc/cCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002629-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			619	21	230	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002629-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	21	228	0	ENST00000269305.4:c.747G>C	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agC					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			690	229	380	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			594	246	315	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458591	120458591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			684	178	309	0	ENST00000256646.2:c.6754G>A	p.Asp2252Asn	p.D2252N	ENST00000256646	NM_024408.3	2252	Gat/Aat					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25463227	25463227	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	181	433	0	ENST00000264709.3:c.2266G>C	p.Glu756Gln	p.E756Q	ENST00000264709	NM_175629.2	756	Gag/Cag					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88651921	88651921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	178	223	0	ENST00000372037.3:c.268G>A	p.Asp90Asn	p.D90N	ENST00000372037	NM_004329.2	90	Gac/Aac					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	534316	534316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	105	265	1	ENST00000311189.7:c.7G>A	p.Glu3Lys	p.E3K	ENST00000311189		3	Gaa/Aaa					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2213538	2213538	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	130	339	0	ENST00000398665.3:c.1558G>A	p.Glu520Lys	p.E520K	ENST00000398665	NM_032482.2	520	Gag/Aag					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65330581	65330581	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			783	299	510	2	ENST00000342505.4:c.1065del	p.Asn357ThrfsTer20	p.N357Tfs*20	ENST00000342505	NM_002227.2	355	gaG/ga					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55946319	55946334	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCACCATTCCACTGC	GGCACCATTCCACTGC	-			P-0002841-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	137	248	0	ENST00000263923.4:c.3849-4_3860del		p.X1283_splice	ENST00000263923	NM_002253.2	1283						NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			642	192	265	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			279	77	120	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			580	188	249	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16259289	16259289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	14	88	0	ENST00000375759.3:c.6554C>T	p.Ser2185Phe	p.S2185F	ENST00000375759	NM_015001.2	2185	tCt/tTt					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405991	70405991	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	237	341	0	ENST00000373644.4:c.3505C>T	p.Gln1169Ter	p.Q1169*	ENST00000373644	NM_030625.2	1169	Caa/Taa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220400	1220400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			687	51	316	0	ENST00000326873.7:c.493G>A	p.Glu165Lys	p.E165K	ENST00000326873	NM_000455.4	165	Gag/Aag					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15349191	15349191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	194	288	0	ENST00000263377.2:c.4086C>G	p.Phe1362Leu	p.F1362L	ENST00000263377	NM_058243.2	1362	ttC/ttG					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944447	40944447	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	220	324	0	ENST00000373198.4:c.2055G>C	p.Lys685Asn	p.K685N	ENST00000373198	NM_133170.3	685	aaG/aaC					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17371325	17371330	+	inframe_deletion	In_Frame_Del	DEL	ATGGCA	ATGGCA	-			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			794	49	378	0	ENST00000375499.3:c.126_131del	p.Ala43_Ile44del	p.A43_I44del	ENST00000375499	NM_003000.2	42	ttTGCCATc/ttc					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36171716	36171720	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAT	CTGAT	-			P-0000774-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	254	169	0	ENST00000300305.3:c.845_849del	p.Asp282ValfsTer316	p.D282Vfs*316	ENST00000300305		282	gATCAG/g					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	274	393	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117663563	117663563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			674	313	541	0	ENST00000368508.3:c.4669G>T	p.Val1557Leu	p.V1557L	ENST00000368508	NM_002944.2	1557	Gta/Tta					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106545734	106545734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			928	348	458	1	ENST00000359195.3:c.3211C>A	p.Gln1071Lys	p.Q1071K	ENST00000359195	NM_002649.2	1071	Cag/Aag					NEWRECORD																																																																									
MYC	4609	MSKCC	GRCh37	8	128752965	128752965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			682	603	456	0	ENST00000377970.2:c.1126G>C	p.Val376Leu	p.V376L	ENST00000377970	NM_002467.4	376	Gtc/Ctc					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125514539	125514539	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	183	304	0	ENST00000428830.2:c.1233+1G>A		p.X411_splice	ENST00000428830	NM_001114121.2	411						NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78933999	78933999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	204	411	0	ENST00000306801.3:c.3599G>T	p.Ser1200Ile	p.S1200I	ENST00000306801	NM_020761.2	1200	aGc/aTc					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121416752	121416752	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001664-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	249	497	0	ENST00000257555.6:c.183del	p.Asn62MetfsTer93	p.N62Mfs*93	ENST00000257555		61	Ccc/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002343-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	350	843	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0002343-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	192	489	1	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32971177	32971191	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCTGGTAAGTTAAT	TTCTGGTAAGTTAAT	-			P-0002343-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	159	676	0	ENST00000380152.3:c.9644_9648+10del		p.X3215_splice	ENST00000380152		3215						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0000973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	96	620	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63852362	63852362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	29	409	0	ENST00000279873.7:c.3140C>T	p.Ser1047Phe	p.S1047F	ENST00000279873	NM_032199.2	1047	tCt/tTt					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23641750	23641750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	11	520	0	ENST00000261584.4:c.1725G>C	p.Trp575Cys	p.W575C	ENST00000261584	NM_024675.3	575	tgG/tgC					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176562800	176562800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	15	353	0	ENST00000439151.2:c.696G>C	p.Gln232His	p.Q232H	ENST00000439151	NM_022455.4	232	caG/caC					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10250998	10250998	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000973-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	14	219	0	ENST00000340748.4:c.3482C>G	p.Ser1161Cys	p.S1161C	ENST00000340748		1161	tCt/tGt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11144865	11144865	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002816-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	163	345	0	ENST00000344626.4:c.3940G>T	p.Asp1314Tyr	p.D1314Y	ENST00000344626	NM_003072.3	1314	Gat/Tat					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	165	203	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43804950	43804950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			680	285	432	0	ENST00000372470.3:c.400G>T	p.Ala134Ser	p.A134S	ENST00000372470	NM_005373.2	134	Gct/Tct					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187527303	187527303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			754	215	516	0	ENST00000441802.2:c.10271C>T	p.Thr3424Met	p.T3424M	ENST00000441802	NM_005245.3	3424	aCg/aTg					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57751180	57751180	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1505	227	519	0	ENST00000274289.3:c.1687G>C	p.Glu563Gln	p.E563Q	ENST00000274289	NM_006622.3	563	Gag/Cag					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123247514	123247514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			991	350	656	0	ENST00000358487.5:c.1977G>C	p.Lys659Asn	p.K659N	ENST00000358487	NM_000141.4	659	aaG/aaC					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			725	656	624	0	ENST00000358487.5:c.1647T>G	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaG					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911530	32911530	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			868	184	415	0	ENST00000380152.3:c.3038C>G	p.Ser1013Ter	p.S1013*	ENST00000380152		1013	tCa/tGa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591886	48591886	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000216-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	288	694	0	ENST00000342988.3:c.1049T>G	p.Val350Gly	p.V350G	ENST00000342988	NM_005359.5	350	gTt/gGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	216	363	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	44	178	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	245	271	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16262489	16262489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	25	159	0	ENST00000375759.3:c.9754G>T	p.Val3252Phe	p.V3252F	ENST00000375759	NM_015001.2	3252	Gtc/Ttc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023609	27023609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	51	263	0	ENST00000324856.7:c.715C>G	p.Pro239Ala	p.P239A	ENST00000324856	NM_006015.4	239	Ccg/Gcg					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25469128	25469128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			915	86	530	0	ENST00000264709.3:c.1330G>A	p.Glu444Lys	p.E444K	ENST00000264709	NM_175629.2	444	Gag/Aag					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212537966	212537966	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	56	381	0	ENST00000342788.4:c.1639G>C	p.Glu547Gln	p.E547Q	ENST00000342788	NM_005235.2	547	Gag/Cag					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180043989	180043989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			599	52	385	0	ENST00000261937.6:c.3007G>A	p.Asp1003Asn	p.D1003N	ENST00000261937	NM_182925.4	1003	Gac/Aac					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117642495	117642495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs9489124		P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			890	52	487	1	ENST00000368508.3:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000368508	NM_002944.2	1902	Gaa/Aaa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157150373	157150373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	152	396	0	ENST00000346085.5:c.1555G>A	p.Asp519Asn	p.D519N	ENST00000346085	NM_020732.3	519	Gat/Aat					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741620	145741620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1435	126	487	0	ENST00000428558.2:c.883G>C	p.Glu295Gln	p.E295Q	ENST00000428558	NM_004260.3	295	Gag/Cag					NEWRECORD																																																																									
RAD51	0	MSKCC	GRCh37	15	41021830	41021830	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			701	44	392	0	ENST00000267868.3:c.772G>A	p.Glu258Lys	p.E258K	ENST00000267868	NM_002875.4	258	Gag/Aag					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10260605	10260605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1070	110	501	0	ENST00000340748.4:c.2257G>A	p.Asp753Asn	p.D753N	ENST00000340748		753	Gat/Aat					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790114	40790114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			621	51	360	0	ENST00000373198.4:c.2617G>T	p.Asp873Tyr	p.D873Y	ENST00000373198	NM_133170.3	873	Gac/Tac					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41521952	41521952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002922-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			880	55	485	0	ENST00000263253.7:c.814C>T	p.Leu272Phe	p.L272F	ENST00000263253	NM_001429.3	272	Ctc/Ttc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	51	168	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	45	261	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29519754	29519754	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	21	283	0	ENST00000389048.3:c.1817G>A	p.Arg606Lys	p.R606K	ENST00000389048	NM_004304.4	606	aGg/aAg					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48027574	48027574	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	30	216	0	ENST00000234420.5:c.2452C>G	p.Leu818Val	p.L818V	ENST00000234420	NM_000179.2	818	Ctt/Gtt					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41275259	41275259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	80	332	0	ENST00000349496.5:c.1425C>G	p.His475Gln	p.H475Q	ENST00000349496	NM_001904.3	475	caC/caG					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	84	286	0	ENST00000318789.4:c.1531-1G>A		p.X511_splice	ENST00000318789	NM_032682.5	511						NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128199939	128199939	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	33	177	0	ENST00000341105.2:c.1366C>G	p.Pro456Ala	p.P456A	ENST00000341105	NM_032638.4	456	Ccg/Gcg					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128199945	128199945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	38	197	0	ENST00000341105.2:c.1360C>G	p.Pro454Ala	p.P454A	ENST00000341105	NM_032638.4	454	Ccc/Gcc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142285098	142285098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	29	397	2	ENST00000350721.4:c.157G>T	p.Val53Leu	p.V53L	ENST00000350721	NM_001184.3	53	Gta/Tta					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1805473	1805473	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs188723332		P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	30	481	0	ENST00000260795.2:c.985G>A	p.Val329Ile	p.V329I	ENST00000260795		329	Gtc/Atc					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38955776	38955776	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	107	349	0	ENST00000357387.3:c.2530G>C	p.Glu844Gln	p.E844Q	ENST00000357387	NM_152756.3	844	Gag/Cag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117622253	117622253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	75	392	0	ENST00000368508.3:c.6617C>A	p.Pro2206His	p.P2206H	ENST00000368508	NM_002944.2	2206	cCt/cAt					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13975511	13975511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	17	113	0	ENST00000405192.2:c.376C>T	p.Gln126Ter	p.Q126*	ENST00000405192	NM_001163147.1	126	Cag/Tag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151868351	151868351	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	92	298	0	ENST00000262189.6:c.9451C>T	p.Gln3151Ter	p.Q3151*	ENST00000262189	NM_170606.2	3151	Cag/Tag					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999276	100999276	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	92	660	0	ENST00000325455.5:c.526T>A	p.Ser176Thr	p.S176T	ENST00000325455	NM_001202474.3	176	Tcc/Acc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9892236	9892236	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	23	434	0	ENST00000330684.3:c.2254A>G	p.Ser752Gly	p.S752G	ENST00000330684	NM_001134407.1	752	Agt/Ggt					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89350084	89350084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	53	690	0	ENST00000301030.4:c.2866G>C	p.Glu956Gln	p.E956Q	ENST00000301030	NM_001256183.1	956	Gag/Cag					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39607438	39607438	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	42	339	0	ENST00000262039.4:c.1516A>T	p.Thr506Ser	p.T506S	ENST00000262039	NM_002647.2	506	Act/Tct					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4097279	4097279	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	55	316	1	ENST00000262948.5:c.982G>A	p.Glu328Lys	p.E328K	ENST00000262948	NM_030662.3	328	Gag/Aag					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000599-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			641	240	311	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000599-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	102	98	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69788764	69788764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000599-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	174	266	0	ENST00000352241.4:c.16G>C	p.Gly6Arg	p.G6R	ENST00000352241	NM_198159.2	6	Ggg/Cgg					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61721202	61721202	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	28	346	0	ENST00000401558.2:c.1072T>C	p.Ser358Pro	p.S358P	ENST00000401558	NM_003400.3	358	Tct/Cct					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023008	27023010	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0000403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	12	13	0	ENST00000324856.7:c.126_128delGGC	p.Ala45del	p.A45del	ENST00000324856	NM_006015.4	38	gaGGCg/gag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578439	7578439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000403-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			44	257	264	0	ENST00000269305.4:c.491delA	p.Lys164SerfsTer6	p.K164Sfs*6	ENST00000269305	NM_001126112.2	164	aAg/ag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0003666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	105	159	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143341	30143341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	75	293	0	ENST00000389048.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000389048	NM_004304.4	62	tCg/tTg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245033	46245033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	501	397	0	ENST00000334344.6:c.3127C>T	p.Gln1043Ter	p.Q1043*	ENST00000334344	NM_152641.2	1043	Caa/Taa					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212589920	212589920	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0003666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	75	215	0	ENST00000342788.4:c.623-1G>T		p.X208_splice	ENST00000342788	NM_005235.2	208						NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151896546	151896546	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0003666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	51	142	0	ENST00000262189.6:c.4093-2A>T		p.X1365_splice	ENST00000262189	NM_170606.2	1365						NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70404834	70404834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	203	278	0	ENST00000373644.4:c.2348G>T	p.Gly783Val	p.G783V	ENST00000373644	NM_030625.2	783	gGc/gTc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593397	48593397	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	55	164	0	ENST00000342988.3:c.1148T>G	p.Ile383Arg	p.I383R	ENST00000342988	NM_005359.5	383	aTa/aGa					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453193	140453200	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTGAGGT	TCTGAGGT	-			P-0003666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	68	160	0	ENST00000288602.6:c.1742-7_1742del		p.X581_splice	ENST00000288602	NM_004333.4	581						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602614	10602617	+	missense_variant	Missense_Mutation	ONP	GCGC	GCGC	ACGG			P-0003666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	250	275	0	ENST00000171111.5:c.961_964delinsCCGT	p.Ala321_Pro322delinsProSer	p.A321_P322delinsPS	ENST00000171111	NM_203500.1	321	GCGCcc/CCGTcc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29654516	29654517	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0003666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	215	262	0	ENST00000358273.4:c.5269-1_5269delinsAA		p.X1757_splice	ENST00000358273	NM_001042492.2	1757						NEWRECORD																																																																									
SOCS1	0	MSKCC	GRCh37	16	11349178	11349178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001907-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			89	32	82	0	ENST00000332029.2:c.158C>T	p.Thr53Met	p.T53M	ENST00000332029	NM_003745.1	53	aCg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001907-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			170	197	455	0	ENST00000269305.4:c.326T>G	p.Phe109Cys	p.F109C	ENST00000269305	NM_001126112.2	109	tTc/tGc					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81355262	81355262	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	98	553	0	ENST00000222390.5:c.1112A>T	p.Asn371Ile	p.N371I	ENST00000222390	NM_000601.4	371	aAc/aTc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509418	106509418	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	80	689	0	ENST00000359195.3:c.1412A>T	p.His471Leu	p.H471L	ENST00000359195	NM_002649.2	471	cAc/cTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			60	143	305	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41243453	41243453	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0000382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	35	925	0	ENST00000357654.3:c.4095A>C	p.Leu1365Phe	p.L1365F	ENST00000357654	NM_007294.3	1365	ttA/ttC					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63533700	63533700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	53	441	0	ENST00000307078.5:c.1454G>C	p.Gly485Ala	p.G485A	ENST00000307078	NM_004655.3	485	gGc/gCc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70338669	70338669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	201	1086	0	ENST00000374080.3:c.65C>A	p.Pro22His	p.P22H	ENST00000374080		22	cCc/cAc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002297-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			549	173	383	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151921100	151921100	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0002297-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			51	11	35	0	ENST00000262189.6:c.3323G>C	p.Arg1108Thr	p.R1108T	ENST00000262189	NM_170606.2	1108	aGa/aCa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945689	151945690	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0002297-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			256	53	192	0	ENST00000262189.6:c.1829_1830del	p.Thr610SerfsTer4	p.T610Sfs*4	ENST00000262189	NM_170606.2	610	aCA/a					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	195	318	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	166	376	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			771	154	386	1	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057979	27057979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	101	261	1	ENST00000324856.7:c.1687C>T	p.Gln563Ter	p.Q563*	ENST00000324856	NM_006015.4	563	Cag/Tag					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085668	16085668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	153	325	0	ENST00000281043.3:c.844G>A	p.Val282Met	p.V282M	ENST00000281043	NM_005378.4	282	Gtg/Atg					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128047001	128047001	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	183	442	0	ENST00000285398.2:c.734C>T	p.Pro245Leu	p.P245L	ENST00000285398	NM_000122.1	245	cCc/cTc					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101894993	101894993	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	185	424	0	ENST00000374994.4:c.546T>A	p.Tyr182Ter	p.Y182*	ENST00000374994	NM_004612.2	182	taT/taA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49424729	49424729	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			776	142	370	1	ENST00000301067.7:c.13618C>G	p.Arg4540Gly	p.R4540G	ENST00000301067	NM_003482.3	4540	Cgg/Ggg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48603039	48603039	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	222	268	0	ENST00000342988.3:c.1340T>A	p.Met447Lys	p.M447K	ENST00000342988	NM_005359.5	447	aTg/aAg					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59853780	59853781	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0002433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1237	83	469	0	ENST00000259008.2:c.2078_2079del	p.Cys693PhefsTer23	p.C693Ffs*23	ENST00000259008	NM_032043.2	693	tGT/t					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992703	72992703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1221	69	605	1	ENST00000268489.5:c.1342G>A	p.Asp448Asn	p.D448N	ENST00000268489	NM_006885.3	448	Gac/Aac					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	178	282	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045025	47045025	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	264	367	1	ENST00000329236.7:c.2117A>T	p.His706Leu	p.H706L	ENST00000329236	NM_001204466.1	706	cAc/cTc					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12629089	12629089	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	89	237	0	ENST00000251849.4:c.1417+1G>A		p.X473_splice	ENST00000251849	NM_002880.3	473						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164973	47164973	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	89	278	0	ENST00000409792.3:c.1153A>G	p.Arg385Gly	p.R385G	ENST00000409792	NM_014159.6	385	Aga/Gga					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145739058	145739058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	80	212	0	ENST00000428558.2:c.2097C>A	p.Asn699Lys	p.N699K	ENST00000428558	NM_004260.3	699	aaC/aaA					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992693	72992693	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	165	619	0	ENST00000268489.5:c.1352G>T	p.Cys451Phe	p.C451F	ENST00000268489	NM_006885.3	451	tGc/tTc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221334	1221334	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	146	306	0	ENST00000326873.7:c.857T>G	p.Leu286Arg	p.L286R	ENST00000326873	NM_000455.4	286	cTg/cGg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44950111	44950111	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0004395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	397	456	0	ENST00000377967.4:c.3878+2T>G		p.X1293_splice	ENST00000377967	NM_021140.2	1293						NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			840	25	392	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176104201	176104201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			793	63	355	0	ENST00000367669.3:c.913C>A	p.Pro305Thr	p.P305T	ENST00000367669	NM_022457.5	305	Cct/Act					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30729875	30729875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	41	235	0	ENST00000359013.4:c.1472-1G>A		p.X491_splice	ENST00000359013	NM_001024847.2	491						NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356129	66356129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	82	511	0	ENST00000273854.3:c.1368G>T	p.Gln456His	p.Q456H	ENST00000273854	NM_004439.5	456	caG/caT					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49447041	49447041	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			887	82	534	0	ENST00000301067.7:c.903C>G	p.Phe301Leu	p.F301L	ENST00000301067	NM_003482.3	301	ttC/ttG					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1218479	1218479	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	68	444	0	ENST00000326873.7:c.354C>G	p.Tyr118Ter	p.Y118*	ENST00000326873	NM_000455.4	118	taC/taG					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610150	10610150	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			750	79	523	0	ENST00000171111.5:c.560T>A	p.Ile187Asn	p.I187N	ENST00000171111	NM_203500.1	187	aTc/aAc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11169566	11169566	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	52	368	0	ENST00000344626.4:c.4635+1G>C		p.X1545_splice	ENST00000344626	NM_003072.3	1545						NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53224560	53224560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			841	73	689	0	ENST00000375401.3:c.3153G>C	p.Leu1051Phe	p.L1051F	ENST00000375401	NM_004187.3	1051	ttG/ttC					NEWRECORD																																																																									
EED	0	MSKCC	GRCh37	11	85989481	85989481	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001515-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	238	402	1	ENST00000263360.6:c.1240C>T	p.Arg414Ter	p.R414*	ENST00000263360	NM_003797.3	414	Cga/Tga					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30032764	30032765	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0001515-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	175	237	1	ENST00000338641.4:c.140_141del	p.Phe47Ter	p.F47*	ENST00000338641	NM_000268.3	47	TTt/t					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0001860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	381	546	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0001860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			766	478	591	2	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	175916344	175916344	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			990	440	509	0	ENST00000367669.3:c.2165A>C	p.Gln722Pro	p.Q722P	ENST00000367669	NM_022457.5	722	cAg/cCg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52598190	52598190	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	497	612	0	ENST00000394830.3:c.3676G>C	p.Glu1226Gln	p.E1226Q	ENST00000394830	NM_018313.4	1226	Gaa/Caa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2969662	2969662	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	198	474	0	ENST00000396946.4:c.1617C>A	p.Cys539Ter	p.C539*	ENST00000396946	NM_032415.4	539	tgC/tgA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001860-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	368	521	0	ENST00000269305.4:c.657delC	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	242	349	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41277230	41277230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	113	238	0	ENST00000349496.5:c.1699G>A	p.Glu567Lys	p.E567K	ENST00000349496	NM_001904.3	567	Gaa/Aaa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175273	112175273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002795-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	76	226	0	ENST00000257430.4:c.3982C>T	p.Gln1328Ter	p.Q1328*	ENST00000257430	NM_000038.5	1328	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0000553-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	152	475	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0000553-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			772	24	329	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0000553-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			739	55	332	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
SDHC	0	MSKCC	GRCh37	1	161298269	161298269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000553-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	49	363	0	ENST00000367975.2:c.161C>T	p.Pro54Leu	p.P54L	ENST00000367975	NM_003001.3	54	cCc/cTc					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	402023	402023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000553-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			816	235	554	0	ENST00000399788.2:c.4768G>A	p.Asp1590Asn	p.D1590N	ENST00000399788	NM_001042603.1	1590	Gac/Aac					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10277309	10277309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000553-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	61	570	0	ENST00000340748.4:c.808G>T	p.Val270Leu	p.V270L	ENST00000340748		270	Gtg/Ttg					NEWRECORD																																																																									
GREM1	0	MSKCC	GRCh37	15	33023295	33023295	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	423	789	0	ENST00000300177.4:c.404A>G	p.Glu135Gly	p.E135G	ENST00000300177	NM_001191322.1	135	gAa/gGa					NEWRECORD																																																																									
CD276	0	MSKCC	GRCh37	15	73994869	73994869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			17	24	11	0	ENST00000318443.5:c.353G>A	p.Gly118Asp	p.G118D	ENST00000318443	NM_001024736.1	118	gGc/gAc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039204	49039241	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAGAGACTGAAAACAAATATTTTGCAGTATGCTTCC	TGCAGAGACTGAAAACAAATATTTTGCAGTATGCTTCC	-			P-0003498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	143	591	0	ENST00000267163.4:c.2282_2319del	p.Met761AsnfsTer21	p.M761Nfs*21	ENST00000267163	NM_000321.2	761	aTGCAGAGACTGAAAACAAATATTTTGCAGTATGCTTCC/a					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76872110	76872117	+	frameshift_variant	Frame_Shift_Del	DEL	AGCTTGCA	AGCTTGCA	-			P-0003498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	177	690	0	ENST00000373344.5:c.5530_5537del	p.Cys1844LeufsTer14	p.C1844Lfs*14	ENST00000373344	NM_000489.3	1844	TGCAAGCTc/c					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76872121	76872132	+	inframe_deletion	In_Frame_Del	DEL	AATAGAAGTCAT	AATAGAAGTCAT	-			P-0003498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	178	726	0	ENST00000373344.5:c.5515_5526del	p.Met1839_Ile1842del	p.M1839_I1842del	ENST00000373344	NM_000489.3	1839	ATGACTTCTATT/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000742-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	94	177	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000742-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	142	147	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2951838	2951838	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199916182		P-0000742-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	238	341	0	ENST00000396946.4:c.3112G>A	p.Ala1038Thr	p.A1038T	ENST00000396946	NM_032415.4	1038	Gcc/Acc					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17743002	17743002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000742-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	39	276	0	ENST00000250003.3:c.910G>A	p.Ala304Thr	p.A304T	ENST00000250003	NM_002478.4	304	Gcc/Acc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66905872	66905872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000742-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	131	225	0	ENST00000374690.3:c.1789G>A	p.Ala597Thr	p.A597T	ENST00000374690	NM_000044.3	597	Gcc/Acc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	199	445	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	38	224	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	155	529	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89858913	89858913	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199967286		P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	105	294	0	ENST00000389301.3:c.1049G>A	p.Arg350Gln	p.R350Q	ENST00000389301	NM_000135.2	350	cGg/cAg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198257128	198257128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	131	445	0	ENST00000335508.6:c.3814A>G	p.Ile1272Val	p.I1272V	ENST00000335508	NM_012433.2	1272	Atc/Gtc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180052953	180052953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	93	424	0	ENST00000261937.6:c.1337C>T	p.Thr446Met	p.T446M	ENST00000261937	NM_182925.4	446	aCg/aTg					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28631496	28631496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	74	445	0	ENST00000241453.7:c.472G>A	p.Val158Met	p.V158M	ENST00000241453	NM_004119.2	158	Gtg/Atg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2130367	2130367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			641	98	381	0	ENST00000219476.3:c.3599G>A	p.Arg1200Gln	p.R1200Q	ENST00000219476	NM_000548.3	1200	cGg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173851	112173851	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	72	357	0	ENST00000257430.4:c.2560del	p.Arg854GlufsTer7	p.R854Efs*7	ENST00000257430	NM_000038.5	854	Aga/ga					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0002218-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1017	434	368	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002218-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	400	307	1	ENST00000269305.4:c.742C>G	p.Arg248Gly	p.R248G	ENST00000269305	NM_001126112.2	248	Cgg/Ggg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941696	48941696	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002218-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			584	216	336	0	ENST00000267163.4:c.1010del	p.Leu337TrpfsTer12	p.L337Wfs*12	ENST00000267163	NM_000321.2	336	Ttt/tt					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	109	455	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119148880	119148880	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	15	310	0	ENST00000264033.4:c.1100A>C	p.Gln367Pro	p.Q367P	ENST00000264033	NM_005188.3	367	cAa/cCa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593656	55593658	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0004302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	8	395	0	ENST00000288135.5:c.1724_1726del	p.Gln575del	p.Q575del	ENST00000288135	NM_000222.2	574	acACAa/aca					NEWRECORD																																																																									
PTPN11	5781	MSKCC	GRCh37	12	112926885	112926885	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs397507544		P-0003231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	12	243	0	ENST00000351677.2:c.1505C>T	p.Ser502Leu	p.S502L	ENST00000351677	NM_002834.3	502	tCa/tTa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11319454	11319454	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			306	54	446	0	ENST00000361445.4:c.13G>T	p.Gly5Ter	p.G5*	ENST00000361445	NM_004958.3	5	Gga/Tga					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101469	27101469	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			191	154	521	0	ENST00000324856.7:c.4751A>T	p.Gln1584Leu	p.Q1584L	ENST00000324856	NM_006015.4	1584	cAg/cTg					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176696790	176696790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			222	175	345	0	ENST00000439151.2:c.5491G>A	p.Asp1831Asn	p.D1831N	ENST00000439151	NM_022455.4	1831	Gat/Aat					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30671529	30671529	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			443	81	611	0	ENST00000376406.3:c.5431C>T	p.Arg1811Cys	p.R1811C	ENST00000376406	NM_014641.2	1811	Cgc/Tgc					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30673631	30673631	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			412	160	620	0	ENST00000376406.3:c.3329G>T	p.Arg1110Leu	p.R1110L	ENST00000376406	NM_014641.2	1110	cGg/cTg					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528865	157528865	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			200	206	415	0	ENST00000346085.5:c.6590G>T	p.Arg2197Met	p.R2197M	ENST00000346085	NM_020732.3	2197	aGg/aTg					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13978832	13978832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			585	322	486	2	ENST00000405192.2:c.275C>T	p.Pro92Leu	p.P92L	ENST00000405192	NM_001163147.1	92	cCc/cTc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8340409	8340409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			176	114	536	0	ENST00000356435.5:c.5187G>T	p.Trp1729Cys	p.W1729C	ENST00000356435		1729	tgG/tgT					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8517931	8517931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			223	145	578	0	ENST00000356435.5:c.1460C>T	p.Thr487Ile	p.T487I	ENST00000356435		487	aCa/aTa					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100272	8100272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			281	120	446	0	ENST00000346208.3:c.246C>A	p.Ser82Arg	p.S82R	ENST00000346208		82	agC/agA					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26911735	26911735	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			215	429	431	0	ENST00000381527.3:c.160A>G	p.Ile54Val	p.I54V	ENST00000381527	NM_001260.1	54	Ata/Gta					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28626691	28626691	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			155	211	460	0	ENST00000241453.7:c.605A>T	p.Gln202Leu	p.Q202L	ENST00000241453	NM_004119.2	202	cAg/cTg					NEWRECORD																																																																									
RAD51B	0	MSKCC	GRCh37	14	68290264	68290264	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			520	140	484	0	ENST00000487270.1:c.4G>T	p.Gly2Cys	p.G2C	ENST00000487270	NM_133509.3	2	Ggt/Tgt					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81609863	81609863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			258	66	522	0	ENST00000298171.2:c.1461C>A	p.Asp487Glu	p.D487E	ENST00000298171	NM_000369.2	487	gaC/gaA					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3900791	3900791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			124	113	369	1	ENST00000262367.5:c.305A>G	p.Gln102Arg	p.Q102R	ENST00000262367	NM_004380.2	102	cAg/cGg					NEWRECORD																																																																									
RAD51D	0	MSKCC	GRCh37	17	33428333	33428333	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			313	72	578	0	ENST00000335858.7:c.454C>T	p.Leu152Phe	p.L152F	ENST00000335858	NM_133629.2	152	Ctc/Ttc					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56780611	56780611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			388	222	559	0	ENST00000337432.4:c.626A>G	p.Tyr209Cys	p.Y209C	ENST00000337432	NM_058216.2	209	tAt/tGt					NEWRECORD																																																																									
PMAIP1	0	MSKCC	GRCh37	18	57569902	57569902	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			261	366	391	0	ENST00000316660.6:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000316660	NM_021127.2	28	Caa/Taa					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162683677	162683677	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			293	35	515	0	ENST00000366898.1:c.292del	p.Glu98SerfsTer5	p.E98Sfs*5	ENST00000366898	NM_004562.2	98	Gag/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579521	7579521	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			82	131	503	0	ENST00000269305.4:c.166delG	p.Glu56LysfsTer67	p.E56Kfs*67	ENST00000269305	NM_001126112.2	56	Gaa/aa					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266104	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			409	195	472	1	ENST00000349496.5:c.100_101delinsTT	p.Gly34Leu	p.G34L	ENST00000349496	NM_001904.3	34	GGa/TTa					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085823	16085824	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0001224-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			183	83	489	0	ENST00000281043.3:c.999_1000delinsT	p.Ala334ProfsTer17	p.A334Pfs*17	ENST00000281043	NM_005378.4	333	gcCGcc/gcTcc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002430-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			932	134	434	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76814144	76814144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002430-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1018	138	595	0	ENST00000373344.5:c.6500C>A	p.Ala2167Asp	p.A2167D	ENST00000373344	NM_000489.3	2167	gCt/gAt					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247288	153247288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002636-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	11	336	0	ENST00000281708.4:c.1514G>A	p.Arg505His	p.R505H	ENST00000281708	NM_033632.3	505	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577515	7577515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			164	12	232	0	ENST00000269305.4:c.766A>C	p.Thr256Pro	p.T256P	ENST00000269305	NM_001126112.2	256	Aca/Cca					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45867709	45867709	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200895828		P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			164	11	321	0	ENST00000391945.4:c.691G>A	p.Val231Met	p.V231M	ENST00000391945	NM_000400.3	231	Gtg/Atg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29462571	29462571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			265	20	338	0	ENST00000389048.3:c.2330A>G	p.Gln777Arg	p.Q777R	ENST00000389048	NM_004304.4	777	cAg/cGg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248726	212248726	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			501	38	276	0	ENST00000342788.4:c.3541C>T	p.Gln1181Ter	p.Q1181*	ENST00000342788	NM_005235.2	1181	Caa/Taa					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86627319	86627319	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			528	66	201	0	ENST00000274376.6:c.692+2T>A		p.X231_splice	ENST00000274376	NM_002890.2	231						NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056402	26056402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			615	68	234	0	ENST00000343677.2:c.255G>C	p.Lys85Asn	p.K85N	ENST00000343677	NM_005319.3	85	aaG/aaC					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152163826	152163826	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			473	45	344	1	ENST00000206249.3:c.547C>G	p.Arg183Gly	p.R183G	ENST00000206249	NM_000125.3	183	Cgc/Ggc					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38271752	38271752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			253	14	343	0	ENST00000425967.3:c.2197C>A	p.Pro733Thr	p.P733T	ENST00000425967	NM_001174067.1	733	Ccc/Acc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717778	89717778	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			285	34	138	0	ENST00000371953.3:c.801+2T>G		p.X267_splice	ENST00000371953	NM_000314.4	267						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29654737	29654737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003270-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			469	36	272	0	ENST00000358273.4:c.5489G>T	p.Arg1830Leu	p.R1830L	ENST00000358273	NM_001042492.2	1830	cGc/cTc					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	206	301	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	122	249	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28610085	28610085	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	114	431	0	ENST00000241453.7:c.1405G>T	p.Asp469Tyr	p.D469Y	ENST00000241453	NM_004119.2	469	Gac/Tac					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116340254	116340256	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0003881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	263	330	0	ENST00000397752.3:c.1120_1122del	p.Phe374del	p.F374del	ENST00000397752	NM_000245.2	372	gaCTTc/gac					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41276089	41276094	+	inframe_deletion	In_Frame_Del	DEL	CAACGC	CAACGC	-			P-0003881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	100	402	0	ENST00000357654.3:c.20_25del	p.Arg7_Glu9delinsGln	p.R7_E9delinsQ	ENST00000357654	NM_007294.3	7	cGCGTTGaa/caa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001518-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1031	33	525	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53230892	53230892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001518-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	22	260	0	ENST00000375401.3:c.1901G>A	p.Arg634His	p.R634H	ENST00000375401	NM_004187.3	634	cGc/cAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0004432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	248	514	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117686868	117686868	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	68	445	0	ENST00000368508.3:c.2849C>T	p.Ser950Phe	p.S950F	ENST00000368508	NM_002944.2	950	tCt/tTt					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061113	38061113	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	12	49	0	ENST00000250448.2:c.876G>C	p.Glu292Asp	p.E292D	ENST00000250448	NM_004496.3	292	gaG/gaC					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17950340	17950340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	73	450	2	ENST00000458235.1:c.1387C>A	p.His463Asn	p.H463N	ENST00000458235	NM_000215.3	463	Cac/Aac					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0004432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	174	356	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651409	52651409	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	313	444	0	ENST00000394830.3:c.1687T>G	p.Leu563Val	p.L563V	ENST00000394830	NM_018313.4	563	Ttg/Gtg					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589147	67589147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	161	203	0	ENST00000274335.5:c.1135A>G	p.Lys379Glu	p.K379E	ENST00000274335		379	Aaa/Gaa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	426	493	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193181550	193181550	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	112	473	0	ENST00000367435.3:c.1097C>A	p.Ala366Glu	p.A366E	ENST00000367435	NM_024529.4	366	gCa/gAa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162267	47162267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	102	387	0	ENST00000409792.3:c.3859C>A	p.Gln1287Lys	p.Q1287K	ENST00000409792	NM_014159.6	1287	Cag/Aag					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106196702	106196702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	122	450	0	ENST00000380013.4:c.5035T>C	p.Tyr1679His	p.Y1679H	ENST00000380013	NM_001127208.2	1679	Tac/Cac					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508526	106508526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	226	124	0	ENST00000359195.3:c.520G>A	p.Glu174Lys	p.E174K	ENST00000359195	NM_002649.2	174	Gag/Aag					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2213636	2213636	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	82	370	0	ENST00000398665.3:c.1656T>G	p.Asp552Glu	p.D552E	ENST00000398665	NM_032482.2	552	gaT/gaG					NEWRECORD																																																																									
PPP6C	0	MSKCC	GRCh37	9	127915996	127915997	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0003234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	37	585	0	ENST00000373547.4:c.484_485del	p.Val162ProfsTer7	p.V162Pfs*7	ENST00000373547	NM_002721.4	162	GTc/c					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0000636-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	134	322	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442023	52442023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000636-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	118	243	0	ENST00000460680.1:c.326G>T	p.Gly109Val	p.G109V	ENST00000460680	NM_004656.3	109	gGa/gTa					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13975399	13975399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186330943		P-0000636-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	79	206	0	ENST00000405192.2:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000405192	NM_001163147.1	163	cGg/cAg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15281190	15281190	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000636-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	50	544	0	ENST00000263388.2:c.5066G>C	p.Gly1689Ala	p.G1689A	ENST00000263388	NM_000435.2	1689	gGt/gCt					NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0003732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	138	298	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11169377	11169377	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	169	577	0	ENST00000361445.4:c.7498A>T	p.Ile2500Phe	p.I2500F	ENST00000361445	NM_004958.3	2500	Att/Ttt					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16086218	16086218	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0003732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	86	266	0	ENST00000281043.3:c.1394A>T	p.Ter465LeuextTer15	p.*465Lext*15	ENST00000281043	NM_005378.4	465	tAg/tTg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44919400	44919400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0003732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	75	161	0	ENST00000377967.4:c.1328A>G	p.Gln443Arg	p.Q443R	ENST00000377967	NM_021140.2	443	cAg/cGg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47038560	47038560	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0003732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	170	540	0	ENST00000329236.7:c.491C>G	p.Ser164Ter	p.S164*	ENST00000329236	NM_001204466.1	164	tCa/tGa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	247	433	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	286	408	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120465394	120465394	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	86	252	0	ENST00000256646.2:c.4867G>T	p.Val1623Phe	p.V1623F	ENST00000256646	NM_024408.3	1623	Gtc/Ttc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134911589	134911589	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	228	456	0	ENST00000398015.3:c.2054G>T	p.Gly685Val	p.G685V	ENST00000398015	NM_004441.4	685	gGt/gTt					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056022	26056022	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	209	402	0	ENST00000343677.2:c.635A>T	p.Lys212Met	p.K212M	ENST00000343677	NM_005319.3	212	aAg/aTg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117662368	117662368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	279	531	0	ENST00000368508.3:c.5009C>T	p.Thr1670Ile	p.T1670I	ENST00000368508	NM_002944.2	1670	aCt/aTt					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508721	106508721	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			630	223	453	0	ENST00000359195.3:c.715G>C	p.Asp239His	p.D239H	ENST00000359195	NM_002649.2	239	Gac/Cac					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	156	386	0	ENST00000326873.7:c.598-2A>G		p.X200_splice	ENST00000326873	NM_000455.4	200						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29422343	29422343	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002571-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	147	348	0	ENST00000358273.4:c.17del	p.Pro6ArgfsTer18	p.P6Rfs*18	ENST00000358273	NM_001042492.2	6	Ccg/cg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108202644	108202647	+	frameshift_variant	Frame_Shift_Del	DEL	TTTG	TTTG	-			P-0003642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	39	323	0	ENST00000278616.4:c.7671_7674del	p.Phe2558LeufsTer5	p.F2558Lfs*5	ENST00000278616	NM_000051.3	2556	acTTTG/ac					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59247863	59247864	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0003642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	91	650	0	ENST00000371222.2:c.879_880del	p.Glu293AspfsTer16	p.E293Dfs*16	ENST00000371222	NM_002228.3	293	gaGCtg/gatg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	200	293	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128750720	128750720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	321	273	0	ENST00000377970.2:c.257C>T	p.Ser86Leu	p.S86L	ENST00000377970	NM_002467.4	86	tCg/tTg					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77103487	77103487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	62	297	1	ENST00000356341.3:c.79G>A	p.Gly27Ser	p.G27S	ENST00000356341	NM_002576.4	27	Ggc/Agc					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41244049	41244049	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	179	308	0	ENST00000357654.3:c.3499G>T	p.Glu1167Ter	p.E1167*	ENST00000357654	NM_007294.3	1167	Gaa/Taa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188207	10188207	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001232-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	177	333	1	ENST00000256474.2:c.350G>T	p.Trp117Leu	p.W117L	ENST00000256474	NM_000551.3	117	tGg/tTg					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40741998	40741998	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001232-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	142	400	0	ENST00000392038.2:c.974A>G	p.Asn325Ser	p.N325S	ENST00000392038	NM_001626.4	325	aAt/aGt					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436617	52436617	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0001232-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			300	31	232	0	ENST00000460680.1:c.2056+1del		p.X686_splice	ENST00000460680	NM_004656.3	686						NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52663010	52663013	+	frameshift_variant	Frame_Shift_Del	DEL	AAAT	AAAT	-			P-0001232-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	32	336	0	ENST00000394830.3:c.1340_1343del	p.His447ArgfsTer5	p.H447Rfs*5	ENST00000394830	NM_018313.4	447	cATTTg/cg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	45	169	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151846177	151846177	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	109	308	0	ENST00000262189.6:c.12835C>T	p.Gln4279Ter	p.Q4279*	ENST00000262189	NM_170606.2	4279	Cag/Tag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151846233	151846233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	77	220	0	ENST00000262189.6:c.12779C>G	p.Ser4260Cys	p.S4260C	ENST00000262189	NM_170606.2	4260	tCc/tGc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100388	8100388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	197	515	0	ENST00000346208.3:c.362C>T	p.Ser121Phe	p.S121F	ENST00000346208		121	tCc/tTc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115947	8115948	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0003772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	71	224	0	ENST00000346208.3:c.1293_1294del	p.Pro432ThrfsTer74	p.P432Tfs*74	ENST00000346208		431	ggACca/ggca					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143094876	143094876	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1442	133	488	0	ENST00000262992.4:c.1268T>G	p.Leu423Arg	p.L423R	ENST00000262992	NM_001101669.1	423	cTt/cGt					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32171570	32171570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1019	128	450	0	ENST00000375023.3:c.3208G>T	p.Gly1070Cys	p.G1070C	ENST00000375023	NM_004557.3	1070	Ggt/Tgt					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781080	135781080	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1111	150	620	0	ENST00000298552.3:c.1885A>T	p.Lys629Ter	p.K629*	ENST00000298552	NM_001162426.1	629	Aag/Tag					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115823	8115823	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002574-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	52	387	0	ENST00000346208.3:c.1169C>A	p.Ser390Ter	p.S390*	ENST00000346208		390	tCg/tAg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433950	49433950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002574-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			104	99	212	0	ENST00000301067.7:c.7603C>T	p.Arg2535Cys	p.R2535C	ENST00000301067	NM_003482.3	2535	Cgt/Tgt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56493621	56493621	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0002574-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	92	283	0	ENST00000267101.3:c.2938-1G>T		p.X980_splice	ENST00000267101	NM_001982.3	980						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	235	201	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125222	47125222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	45	231	0	ENST00000409792.3:c.6048G>T	p.Trp2016Cys	p.W2016C	ENST00000409792	NM_014159.6	2016	tgG/tgT					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176519646	176519646	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	20	144	0	ENST00000292408.4:c.919-1G>A		p.X307_splice	ENST00000292408	NM_213647.1	307						NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40447742	40447742	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	58	559	0	ENST00000345506.4:c.481G>A	p.Glu161Lys	p.E161K	ENST00000345506	NM_003152.3	161	Gag/Aag					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0002601-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	36	112	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66231764	66231764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002601-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	17	363	0	ENST00000273854.3:c.1936G>A	p.Gly646Arg	p.G646R	ENST00000273854	NM_004439.5	646	Gga/Aga					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87367001	87367001	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0002601-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	26	422	3	ENST00000277120.3:c.1396+1G>T		p.X466_splice	ENST00000277120		466						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002601-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			112	135	339	0	ENST00000269305.4:c.518T>C	p.Val173Ala	p.V173A	ENST00000269305	NM_001126112.2	173	gTg/gCg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			878	22	411	1	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			758	63	389	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29449800	29449800	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs76742576		P-0001895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	92	297	0	ENST00000389048.3:c.3055G>A	p.Val1019Ile	p.V1019I	ENST00000389048	NM_004304.4	1019	Gtc/Atc					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226595556	226595558	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0001895-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			846	92	302	0	ENST00000366794.5:c.73_75del	p.Ser25del	p.S25del	ENST00000366794	NM_001618.3	25	AGC/-					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	9	305	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112170679	112170679	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	88	292	0	ENST00000257430.4:c.1775T>A	p.Leu592Ter	p.L592*	ENST00000257430	NM_000038.5	592	tTa/tAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	352	247	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac					NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056588	26056590	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs751086925		P-0001017-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			650	135	153	0	ENST00000343677.2:c.67_69del	p.Lys23del	p.K23del	ENST00000343677	NM_005319.3	23	AAG/-					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151891154	151891154	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	127	341	0	ENST00000262189.6:c.4600C>T	p.Gln1534Ter	p.Q1534*	ENST00000262189	NM_170606.2	1534	Cag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29654694	29654694	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	327	418	0	ENST00000358273.4:c.5446G>T	p.Glu1816Ter	p.E1816*	ENST00000358273	NM_001042492.2	1816	Gag/Tag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022388	31022388	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	55	241	1	ENST00000375687.4:c.1873C>T	p.Arg625Ter	p.R625*	ENST00000375687	NM_015338.5	625	Cga/Tga					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589594	67589596	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0001976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	94	319	0	ENST00000274335.5:c.1358_1360del	p.Asn453del	p.N453del	ENST00000274335		453	AAC/-					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89653835	89653835	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001976-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	242	333	0	ENST00000371953.3:c.133delG	p.Val45TyrfsTer9	p.V45Yfs*9	ENST00000371953	NM_000314.4	45	Gta/ta					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16255968	16255968	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	30	415	0	ENST00000375759.3:c.3233C>G	p.Ser1078Ter	p.S1078*	ENST00000375759	NM_015001.2	1078	tCa/tGa					NEWRECORD																																																																									
CTLA4	0	MSKCC	GRCh37	2	204735510	204735510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	30	452	1	ENST00000302823.3:c.311C>T	p.Thr104Met	p.T104M	ENST00000302823	NM_005214.4	104	aCg/aTg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52692222	52692222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	31	673	0	ENST00000394830.3:c.638C>G	p.Ser213Cys	p.S213C	ENST00000394830	NM_018313.4	213	tCt/tGt					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142266679	142266679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	160	618	0	ENST00000350721.4:c.3245G>T	p.Arg1082Leu	p.R1082L	ENST00000350721	NM_001184.3	1082	cGt/cTt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593648	55593648	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	83	576	2	ENST00000288135.5:c.1714G>T	p.Asp572Tyr	p.D572Y	ENST00000288135	NM_000222.2	572	Gac/Tac					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187519130	187519130	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	33	508	0	ENST00000441802.2:c.12253C>G	p.Gln4085Glu	p.Q4085E	ENST00000441802	NM_005245.3	4085	Cag/Gag					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187542177	187542177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	50	673	0	ENST00000441802.2:c.5563C>T	p.Pro1855Ser	p.P1855S	ENST00000441802	NM_005245.3	1855	Cca/Tca					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1255449	1255449	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	28	449	0	ENST00000310581.5:c.3110C>G	p.Ser1037Cys	p.S1037C	ENST00000310581	NM_198253.2	1037	tCt/tGt					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86679595	86679595	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			492	54	607	0	ENST00000274376.6:c.2756C>G	p.Ser919Ter	p.S919*	ENST00000274376	NM_002890.2	919	tCa/tGa					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180030299	180030299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	77	572	0	ENST00000261937.6:c.3985G>T	p.Gly1329Cys	p.G1329C	ENST00000261937	NM_182925.4	1329	Ggc/Tgc					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152265628	152265628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	37	279	0	ENST00000206249.3:c.1081G>A	p.Ala361Thr	p.A361T	ENST00000206249	NM_000125.3	361	Gcg/Acg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2956934	2956934	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	24	390	0	ENST00000396946.4:c.2693A>G	p.Gln898Arg	p.Q898R	ENST00000396946	NM_032415.4	898	cAg/cGg					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50444333	50444333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	39	388	0	ENST00000331340.3:c.263C>T	p.Ser88Leu	p.S88L	ENST00000331340	NM_006060.4	88	tCg/tTg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139399835	139399835	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	39	424	0	ENST00000277541.6:c.4513T>G	p.Cys1505Gly	p.C1505G	ENST00000277541	NM_017617.3	1505	Tgt/Ggt					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123239450	123239450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	50	469	0	ENST00000358487.5:c.2387C>T	p.Ser796Phe	p.S796F	ENST00000358487	NM_000141.4	796	tCt/tTt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108170479	108170479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	48	570	0	ENST00000278616.4:c.5044G>C	p.Asp1682His	p.D1682H	ENST00000278616	NM_000051.3	1682	Gat/Cat					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	464357	464357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	45	766	0	ENST00000399788.2:c.837G>C	p.Met279Ile	p.M279I	ENST00000399788	NM_001042603.1	279	atG/atC					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28893659	28893659	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	37	418	0	ENST00000282397.4:c.3187C>G	p.Leu1063Val	p.L1063V	ENST00000282397	NM_002019.4	1063	Ctg/Gtg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11144835	11144835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	82	389	0	ENST00000344626.4:c.3910C>T	p.Gln1304Ter	p.Q1304*	ENST00000344626	NM_003072.3	1304	Cag/Tag					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716051	52716051	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	33	587	0	ENST00000322088.6:c.616A>G	p.Ile206Val	p.I206V	ENST00000322088	NM_014225.5	206	Atc/Gtc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70345945	70345945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	42	336	0	ENST00000374080.3:c.2482G>C	p.Asp828His	p.D828H	ENST00000374080		828	Gat/Cat					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21968238	21968238	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	109	377	0	ENST00000304494.5:c.461del	p.Ile154ThrfsTer39	p.I154Tfs*39	ENST00000304494	NM_000077.4	154	aTc/ac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21968238	21968238	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	109	377	0	ENST00000304494.5:c.461del	p.Ile154ThrfsTer39	p.I154Tfs*39	ENST00000304494	NM_000077.4	154	aTc/ac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577576	7577578	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0002016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	63	427	0	ENST00000269305.4:c.703_705del	p.Asn235del	p.N235del	ENST00000269305	NM_001126112.2	235	AAC/-					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162746086	162746086	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002806-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			768	147	474	0	ENST00000367921.3:c.2209A>T	p.Ser737Cys	p.S737C	ENST00000367921	NM_006182.2	737	Agt/Tgt					NEWRECORD																																																																									
SH2D1A	0	MSKCC	GRCh37	X	123499643	123499645	+	missense_variant	Missense_Mutation	ONP	CCC	CCC	ACA			P-0002806-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			147	79	273	0	ENST00000371139.4:c.170_172delinsACA	p.Ser57_Gln58delinsTyrLys	p.S57_Q58delinsYK	ENST00000371139	NM_001114937.2	57	tCCCag/tACAag					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207102	1207102	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002806-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			606	126	394	0	ENST00000326873.7:c.191del	p.Lys64ArgfsTer32	p.K64Rfs*32	ENST00000326873	NM_000455.4	64	Aag/ag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380279	25380282	+	missense_variant	Missense_Mutation	ONP	CCTG	CCTG	ACTC			P-0002806-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			618	127	479	0	ENST00000256078.4:c.176_179delinsGAGT	p.Ala59_Gly60delinsGlyVal	p.A59_G60delinsGV	ENST00000256078	NM_033360.2	59	gCAGGt/gGAGTt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76889201	76889201	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	368	504	2	ENST00000373344.5:c.4810-1G>A		p.X1604_splice	ENST00000373344	NM_000489.3	1604						NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118165638	118165652	+	inframe_deletion	In_Frame_Del	DEL	GACATCGTCCAGACC	GACATCGTCCAGACC	-			P-0002885-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			795	211	314	0	ENST00000369448.3:c.149_163del	p.Asp50_Thr54del	p.D50_T54del	ENST00000369448	NM_017709.3	50	GACATCGTCCAGACC/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002414-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	339	452	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0002414-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	205	312	1	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29562746	29562746	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002414-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			877	211	540	1	ENST00000358273.4:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000358273	NM_001042492.2	1276	Cga/Tga					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67482847	67482847	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002414-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	479	366	0	ENST00000327367.4:c.1252del	p.Ser418AlafsTer58	p.S418Afs*58	ENST00000327367	NM_005902.3	417	ccA/cc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002414-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	903	587	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001543-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	159	294	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001543-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	159	294	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481898	56481898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001543-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1868	881	628	0	ENST00000267101.3:c.826C>T	p.Pro276Ser	p.P276S	ENST00000267101	NM_001982.3	276	Ccc/Tcc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604796	48604798	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0001543-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	269	498	0	ENST00000342988.3:c.1619_1621delTTC	p.Leu540del	p.L540del	ENST00000342988	NM_005359.5	540	CTT/-					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9984844	9984844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0003856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	107	557	0	ENST00000330684.3:c.1121A>T	p.Lys374Met	p.K374M	ENST00000330684	NM_001134407.1	374	aAg/aTg					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226576371	226576371	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2416	489	644	1	ENST00000366794.5:c.703G>C	p.Glu235Gln	p.E235Q	ENST00000366794	NM_001618.3	235	Gaa/Caa					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47641421	47641421	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	419	526	0	ENST00000233146.2:c.806C>G	p.Ser269Ter	p.S269*	ENST00000233146	NM_000251.2	269	tCa/tGa					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86672267	86672267	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			639	305	358	0	ENST00000274376.6:c.2069T>G	p.Phe690Cys	p.F690C	ENST00000274376	NM_002890.2	690	tTt/tGt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419909	152419909	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	234	232	0	ENST00000206249.3:c.1596C>G	p.Asn532Lys	p.N532K	ENST00000206249	NM_000125.3	532	aaC/aaG					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152012253	152012253	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	1031	631	0	ENST00000262189.6:c.560C>G	p.Ser187Ter	p.S187*	ENST00000262189	NM_170606.2	187	tCa/tGa					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56487568	56487568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			536	305	455	0	ENST00000267101.3:c.1501G>A	p.Asp501Asn	p.D501N	ENST00000267101	NM_001982.3	501	Gac/Aac					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112079	115112079	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			568	346	390	1	ENST00000257566.3:c.1661C>G	p.Ser554Trp	p.S554W	ENST00000257566	NM_016569.3	554	tCg/tGg					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115118709	115118709	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			901	643	446	4	ENST00000257566.3:c.632A>C	p.Asn211Thr	p.N211T	ENST00000257566	NM_016569.3	211	aAc/aCc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68845585	68845585	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	435	322	4	ENST00000261769.5:c.833-2A>G		p.X278_splice	ENST00000261769	NM_004360.3	278						NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	369	455	1	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115120810	115120810	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000201-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	328	381	3	ENST00000257566.3:c.196delG	p.Asp66IlefsTer22	p.D66Ifs*22	ENST00000257566	NM_016569.3	66	Gat/at					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48581157	48581157	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000970-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	14	264	0	ENST00000342988.3:c.461C>G	p.Ser154Ter	p.S154*	ENST00000342988	NM_005359.5	154	tCa/tGa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	95	293	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579529	7579529	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	68	221	0	ENST00000269305.4:c.158G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tGg/tAg					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128050388	128050388	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	56	231	0	ENST00000285398.2:c.269C>G	p.Ser90Cys	p.S90C	ENST00000285398	NM_000122.1	90	tCt/tGt					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142171969	142171969	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	56	309	0	ENST00000350721.4:c.7761+1G>T		p.X2587_splice	ENST00000350721	NM_001184.3	2587						NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11129671	11129671	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	76	292	0	ENST00000344626.4:c.2481del	p.Ser828ProfsTer3	p.S828Pfs*3	ENST00000344626	NM_003072.3	826	gCc/gc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0004221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	154	564	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41747850	41747850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	112	285	0	ENST00000226382.2:c.919G>A	p.Ala307Thr	p.A307T	ENST00000226382	NM_003924.3	307	Gcc/Acc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528417	157528417	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	133	291	0	ENST00000346085.5:c.6142A>G	p.Ile2048Val	p.I2048V	ENST00000346085	NM_020732.3	2048	Att/Gtt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	130	243	0	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68842745	68842753	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ATACACTGT	ATACACTGT	-			P-0004326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	205	370	0	ENST00000261769.5:c.682_687+3delTACACTGTA		p.X228_splice	ENST00000261769	NM_004360.3	228						NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000466-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	47	927	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060986	38060986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000466-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	24	331	0	ENST00000250448.2:c.1003C>A	p.Leu335Met	p.L335M	ENST00000250448	NM_004496.3	335	Ctg/Atg					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028657	12028657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000466-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	70	495	1	ENST00000353533.5:c.860G>A	p.Arg287His	p.R287H	ENST00000353533	NM_003010.3	287	cGc/cAc					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164704	36164710	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGCGA	CTTGCGA	-			P-0000466-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	64	653	0	ENST00000300305.3:c.1165_1171delTCGCAAG	p.Ser389ArgfsTer203	p.S389Rfs*203	ENST00000300305		389	TCGCAAGcg/cg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002779-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	160	351	2	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0002779-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	133	395	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176675248	176675248	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201483724		P-0002779-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	97	416	0	ENST00000439151.2:c.4564G>A	p.Asp1522Asn	p.D1522N	ENST00000439151	NM_022455.4	1522	Gat/Aat					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16086004	16086004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002779-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	46	299	0	ENST00000281043.3:c.1180C>T	p.Arg394Cys	p.R394C	ENST00000281043	NM_005378.4	394	Cgc/Tgc					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128050355	128050355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002779-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	55	374	0	ENST00000285398.2:c.302T>C	p.Val101Ala	p.V101A	ENST00000285398	NM_000122.1	101	gTg/gCg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41277967	41277967	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002779-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	63	339	0	ENST00000349496.5:c.1931T>C	p.Leu644Pro	p.L644P	ENST00000349496	NM_001904.3	644	cTt/cCt					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133225543	133225543	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002779-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	67	370	0	ENST00000320574.5:c.4121A>C	p.Lys1374Thr	p.K1374T	ENST00000320574	NM_006231.2	1374	aAa/aCa					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57484597	57484597	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002779-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	30	181	0	ENST00000371085.3:c.681G>C	p.Gln227His	p.Q227H	ENST00000371085	NM_000516.4	227	caG/caC					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039147	49039147	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	98	168	0	ENST00000267163.4:c.2228delT	p.Leu743Ter	p.L743*	ENST00000267163	NM_000321.2	742	gTt/gt					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	209	280	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56161716	56161716	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	376	268	0	ENST00000399503.3:c.1213del	p.Arg405ValfsTer31	p.R405Vfs*31	ENST00000399503	NM_005921.1	405	Cgt/gt					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56167804	56167805	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0000864-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	186	214	0	ENST00000399503.3:c.1370_1371delCA	p.Thr457SerfsTer3	p.T457Sfs*3	ENST00000399503	NM_005921.1	457	ACa/a					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0001151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			793	204	593	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120459250	120459250	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	42	182	0	ENST00000256646.2:c.6095A>G	p.His2032Arg	p.H2032R	ENST00000256646	NM_024408.3	2032	cAt/cGt					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41748290	41748290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			785	85	572	1	ENST00000226382.2:c.479C>T	p.Ala160Val	p.A160V	ENST00000226382	NM_003924.3	160	gCg/gTg					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152201874	152201874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			789	72	370	0	ENST00000206249.3:c.728G>A	p.Arg243His	p.R243H	ENST00000206249	NM_000125.3	243	cGt/cAt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29683540	29683540	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	137	299	2	ENST00000358273.4:c.7678G>T	p.Glu2560Ter	p.E2560*	ENST00000358273	NM_001042492.2	2560	Gaa/Taa					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56492689	56492689	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0001151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	446	499	0	ENST00000407977.2:c.250C>T	p.Gln84Ter	p.Q84*	ENST00000407977		84	Cag/Tag					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6414400	6414400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	20	94	0	ENST00000356142.4:c.34G>A	p.Gly12Arg	p.G12R	ENST00000356142	NM_018890.3	12	Gga/Aga					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119148928	119148928	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	111	288	0	ENST00000264033.4:c.1148T>G	p.Ile383Arg	p.I383R	ENST00000264033	NM_005188.3	383	aTa/aGa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46244616	46244616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	56	330	0	ENST00000334344.6:c.2710C>T	p.Gln904Ter	p.Q904*	ENST00000334344	NM_152641.2	904	Cag/Tag					NEWRECORD																																																																									
PMAIP1	0	MSKCC	GRCh37	18	57569920	57569920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	52	264	0	ENST00000316660.6:c.100G>T	p.Asp34Tyr	p.D34Y	ENST00000316660	NM_021127.2	34	Gac/Tac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001437-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	14	197	0	ENST00000269305.4:c.461G>A	p.Gly154Asp	p.G154D	ENST00000269305	NM_001126112.2	154	gGc/gAc					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	41	274	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	42	275	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	282	286	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56411684	56411684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	82	538	0	ENST00000348428.3:c.1868C>T	p.Pro623Leu	p.P623L	ENST00000348428	NM_006785.3	623	cCg/cTg					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372127	55372127	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	170	106	0	ENST00000297316.4:c.817C>T	p.Arg273Ter	p.R273*	ENST00000297316	NM_022454.3	273	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	582	279	0	ENST00000269305.4:c.470T>G	p.Val157Gly	p.V157G	ENST00000269305	NM_001126112.2	157	gTc/gGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001729-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	210	525	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0001729-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	329	464	1	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30680956	30680956	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001729-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	383	666	0	ENST00000376406.3:c.763G>T	p.Glu255Ter	p.E255*	ENST00000376406	NM_014641.2	255	Gaa/Taa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0002154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	389	341	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	140	265	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55143638	55143638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			922	97	299	0	ENST00000257290.5:c.1870G>T	p.Val624Phe	p.V624F	ENST00000257290	NM_006206.4	624	Gtt/Ttt					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29041214	29041214	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1339	620	401	1	ENST00000282397.4:c.214G>T	p.Glu72Ter	p.E72*	ENST00000282397	NM_002019.4	72	Gaa/Taa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937425	76937425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1279	189	419	0	ENST00000373344.5:c.3323C>T	p.Ser1108Leu	p.S1108L	ENST00000373344	NM_000489.3	1108	tCa/tTa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112116525	112116526	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0002154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			789	164	297	0	ENST00000257430.4:c.572_573del	p.Tyr191Ter	p.Y191*	ENST00000257430	NM_000038.5	190	gaATat/gaat					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16089935	16089935	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001175-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	42	379	0	ENST00000268712.3:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000268712	NM_006311.3	59	Caa/Taa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0004237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	28	248	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43598035	43598035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	21	274	0	ENST00000355710.3:c.583T>C	p.Phe195Leu	p.F195L	ENST00000355710	NM_020975.4	195	Ttc/Ctc					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881392	37881392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	16	216	0	ENST00000269571.5:c.2584A>G	p.Thr862Ala	p.T862A	ENST00000269571		862	Aca/Gca					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56492824	56492824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	37	250	0	ENST00000407977.2:c.115G>A	p.Glu39Lys	p.E39K	ENST00000407977		39	Gaa/Aaa					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715979	52715979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	97	367	1	ENST00000322088.6:c.544C>T	p.Arg182Trp	p.R182W	ENST00000322088	NM_014225.5	182	Cgg/Tgg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	74	292	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	141	638	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37673753	37673753	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	130	694	0	ENST00000447079.4:c.2907del	p.Phe969LeufsTer4	p.F969Lfs*4	ENST00000447079	NM_015083.1	969	ttC/tt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187629920	187629920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000225-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1707	114	433	0	ENST00000441802.2:c.1062C>A	p.His354Gln	p.H354Q	ENST00000441802	NM_005245.3	354	caC/caA					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0000225-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	28	95	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0000225-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	28	95	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69458666	69458666	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000225-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1837	313	461	0	ENST00000227507.2:c.481A>G	p.Ile161Val	p.I161V	ENST00000227507	NM_053056.2	161	Att/Gtt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0000225-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1287	386	425	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5215339	5215339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs114545401		P-0000225-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1334	139	400	0	ENST00000357368.4:c.4279G>A	p.Ala1427Thr	p.A1427T	ENST00000357368	NM_002850.3	1427	Gcc/Acc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970991	21970991	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000225-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1154	213	357	0	ENST00000304494.5:c.367delC	p.His123IlefsTer23	p.H123Ifs*23	ENST00000304494	NM_000077.4	123	Cat/at					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974719	21974724	+	inframe_deletion	In_Frame_Del	DEL	CGCCCC	CGCCCC	-			P-0000225-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1223	263	300	0	ENST00000304494.5:c.103_108delGGGGCG	p.Gly35_Ala36del	p.G35_A36del	ENST00000304494	NM_000077.4	35	GGGGCG/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0003902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	60	377	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76776918	76776918	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	28	513	0	ENST00000373344.5:c.7034T>C	p.Val2345Ala	p.V2345A	ENST00000373344	NM_000489.3	2345	gTg/gCg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162474	47162474	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	95	379	0	ENST00000409792.3:c.3652C>T	p.Gln1218Ter	p.Q1218*	ENST00000409792	NM_014159.6	1218	Caa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578523	7578548	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCAAAACATCTTGTTGAGGGCAGG	TGGCAAAACATCTTGTTGAGGGCAGG	-			P-0003125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	44	211	0	ENST00000269305.4:c.382_407del	p.Pro128ThrfsTer12	p.P128Tfs*12	ENST00000269305	NM_001126112.2	128	CCTGCCCTCAACAAGATGTTTTGCCAa/a					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139405643	139405650	+	frameshift_variant	Frame_Shift_Del	DEL	AGTCCTCG	AGTCCTCG	-			P-0003125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	26	228	0	ENST00000277541.6:c.2541_2548del	p.Glu848Ter	p.E848*	ENST00000277541	NM_017617.3	847	tcCGAGGACTat/tcat					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000306-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	228	303	0	ENST00000288135.5:c.1669T>C	p.Trp557Arg	p.W557R	ENST00000288135	NM_000222.2	557	Tgg/Cgg					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149596	202149596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	47	444	0	ENST00000358485.4:c.1037G>A	p.Cys346Tyr	p.C346Y	ENST00000358485	NM_001080125.1	346	tGc/tAc					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149928	202149928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	36	359	0	ENST00000358485.4:c.1369G>T	p.Asp457Tyr	p.D457Y	ENST00000358485	NM_001080125.1	457	Gac/Tac					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67592043	67592043	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	57	389	0	ENST00000274335.5:c.1859A>G	p.Asp620Gly	p.D620G	ENST00000274335		620	gAt/gGt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117710590	117710590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199766618		P-0004573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	66	361	0	ENST00000368508.3:c.1682C>T	p.Pro561Leu	p.P561L	ENST00000368508	NM_002944.2	561	cCg/cTg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151874416	151874416	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	59	442	0	ENST00000262189.6:c.8122G>T	p.Glu2708Ter	p.E2708*	ENST00000262189	NM_170606.2	2708	Gaa/Taa					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64138918	64138918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	29	220	0	ENST00000334205.4:c.2285C>T	p.Pro762Leu	p.P762L	ENST00000334205	NM_003942.2	762	cCc/cTc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163297	32163297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000325-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			442	130	864	3	ENST00000375023.3:c.5929G>A	p.Glu1977Lys	p.E1977K	ENST00000375023	NM_004557.3	1977	Gag/Aag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49432651	49432651	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000325-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			159	50	370	0	ENST00000301067.7:c.8488C>T	p.Arg2830Ter	p.R2830*	ENST00000301067	NM_003482.3	2830	Cga/Tga					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602475	10602475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000325-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			113	139	454	0	ENST00000171111.5:c.1103G>A	p.Cys368Tyr	p.C368Y	ENST00000171111	NM_203500.1	368	tGc/tAc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164342	47164342	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0004069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	33	311	0	ENST00000409792.3:c.1784C>G	p.Ser595Ter	p.S595*	ENST00000409792	NM_014159.6	595	tCa/tGa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50358698	50358698	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0004069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	29	134	0	ENST00000331340.3:c.40+1G>T		p.X14_splice	ENST00000331340	NM_006060.4	14						NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575420	64575420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	79	316	0	ENST00000337652.1:c.612C>A	p.His204Gln	p.H204Q	ENST00000337652	NM_130803.2	204	caC/caA					NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30133308	30133308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	73	427	1	ENST00000263025.4:c.190C>T	p.Arg64Cys	p.R64C	ENST00000263025	NM_002746.2	64	Cgc/Tgc					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33288690	33288690	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	36	209	0	ENST00000374542.5:c.862del	p.Asp288MetfsTer6	p.D288Mfs*6	ENST00000374542	NM_001141970.1	288	Gat/at					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57754349	57754349	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	51	212	0	ENST00000274289.3:c.502del	p.Ala168LeufsTer4	p.A168Lfs*4	ENST00000274289	NM_006622.3	168	Gct/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	100	431	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94197379	94197415	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTTCAAAACCTCCACTATAGTCCACCTGAAAACAC	AGGTTCAAAACCTCCACTATAGTCCACCTGAAAACAC	-			P-0004175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	96	579	0	ENST00000323929.3:c.1099-10_1125del		p.X367_splice	ENST00000323929	NM_005591.3	367						NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481433	140481433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000219-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			918	116	584	2	ENST00000288602.6:c.1375G>T	p.Val459Leu	p.V459L	ENST00000288602	NM_004333.4	459	Gtg/Ttg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000219-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			945	80	675	0	ENST00000342988.3:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000342988	NM_005359.5	352	gGa/gAa					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53226187	53226187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000219-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			962	79	653	1	ENST00000375401.3:c.2662C>T	p.Arg888Cys	p.R888C	ENST00000375401	NM_004187.3	888	Cgt/Tgt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0000219-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			890	91	525	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0000783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	474	362	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177930	112177930	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35540155		P-0000783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			260	164	318	0	ENST00000257430.4:c.6639G>A	p.Met2213Ile	p.M2213I	ENST00000257430	NM_000038.5	2213	atG/atA					NEWRECORD																																																																									
EED	0	MSKCC	GRCh37	11	85977219	85977219	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	210	292	0	ENST00000263360.6:c.821T>C	p.Ile274Thr	p.I274T	ENST00000263360	NM_003797.3	274	aTt/aCt					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117888	70117888	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	68	223	0	ENST00000245479.2:c.356C>A	p.Ala119Glu	p.A119E	ENST00000245479	NM_000346.3	119	gCg/gAg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914954	32914955	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-	rs80359597		P-0000783-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	160	310	0	ENST00000380152.3:c.6468_6469delTC	p.Gln2157IlefsTer18	p.Q2157Ifs*18	ENST00000380152		2154	taTCtc/tatc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			787	347	254	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49445028	49445028	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs75226229		P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	103	142	1	ENST00000301067.7:c.2438C>T	p.Pro813Leu	p.P813L	ENST00000301067	NM_003482.3	813	cCg/cTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			649	380	227	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198257132	198257132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	163	426	0	ENST00000335508.6:c.3810C>A	p.Asn1270Lys	p.N1270K	ENST00000335508	NM_012433.2	1270	aaC/aaA					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521706	89521706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	282	350	0	ENST00000336596.2:c.2783G>C	p.Cys928Ser	p.C928S	ENST00000336596	NM_005233.5	928	tGc/tCc					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50468194	50468194	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	351	323	2	ENST00000331340.3:c.1429T>A	p.Tyr477Asn	p.Y477N	ENST00000331340	NM_006060.4	477	Tac/Aac					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508683	106508683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			767	262	360	0	ENST00000359195.3:c.677G>T	p.Arg226Leu	p.R226L	ENST00000359195	NM_002649.2	226	cGc/cTc					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371963	55371963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	107	150	0	ENST00000297316.4:c.653C>A	p.Pro218Gln	p.P218Q	ENST00000297316	NM_022454.3	218	cCg/cAg					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94211901	94211901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	120	384	0	ENST00000323929.3:c.544G>A	p.Gly182Arg	p.G182R	ENST00000323929	NM_005591.3	182	Gga/Aga					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32929185	32929185	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			681	277	469	0	ENST00000380152.3:c.7195A>T	p.Thr2399Ser	p.T2399S	ENST00000380152		2399	Aca/Tca					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36987078	36987078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			3599	287	269	0	ENST00000354822.5:c.611A>G	p.Tyr204Cys	p.Y204C	ENST00000354822	NM_001079668.2	204	tAc/tGc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2115571	2115571	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			856	88	377	0	ENST00000219476.3:c.1651G>T	p.Ala551Ser	p.A551S	ENST00000219476	NM_000548.3	551	Gcc/Tcc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602760	10602760	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	462	368	0	ENST00000171111.5:c.818G>C	p.Cys273Ser	p.C273S	ENST00000171111	NM_203500.1	273	tGc/tCc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40735447	40735447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	452	378	0	ENST00000373198.4:c.3426G>T	p.Arg1142Ser	p.R1142S	ENST00000373198	NM_133170.3	1142	agG/agT					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57484596	57484596	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	301	248	0	ENST00000371085.3:c.680A>T	p.Gln227Leu	p.Q227L	ENST00000371085	NM_000516.4	227	cAg/cTg					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39817344	39817344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			787	193	403	0	ENST00000288319.7:c.219C>A	p.Ser73Arg	p.S73R	ENST00000288319	NM_182918.3	73	agC/agA					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66942725	66942725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	163	235	0	ENST00000374690.3:c.2506A>G	p.Ile836Val	p.I836V	ENST00000374690	NM_000044.3	836	Atc/Gtc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151859633	151859634	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0002850-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			636	253	357	0	ENST00000262189.6:c.11028_11029del	p.Cys3677TyrfsTer10	p.C3677Yfs*10	ENST00000262189	NM_170606.2	3676	ctATgt/ctgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112128161	112128161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	240	321	0	ENST00000257430.4:c.664C>T	p.Gln222Ter	p.Q222*	ENST00000257430	NM_000038.5	222	Cag/Tag					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66535352	66535352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	146	442	0	ENST00000273854.3:c.109C>T	p.Arg37Trp	p.R37W	ENST00000273854	NM_004439.5	37	Cgg/Tgg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174580	112174580	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	214	357	0	ENST00000257430.4:c.3289G>T	p.Glu1097Ter	p.E1097*	ENST00000257430	NM_000038.5	1097	Gaa/Taa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151877909	151877909	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	149	226	0	ENST00000262189.6:c.7036G>C	p.Gly2346Arg	p.G2346R	ENST00000262189	NM_170606.2	2346	Ggc/Cgc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	250	315	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121438948	121438948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146855738		P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	38	477	2	ENST00000257555.6:c.1849G>A	p.Val617Ile	p.V617I	ENST00000257555		617	Gtc/Atc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575078	48575078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	275	359	0	ENST00000342988.3:c.272C>T	p.Pro91Leu	p.P91L	ENST00000342988	NM_005359.5	91	cCt/cTt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123195164	123195164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			969	287	435	0	ENST00000218089.9:c.1507C>G	p.Leu503Val	p.L503V	ENST00000218089	NM_001042749.1	503	Ctg/Gtg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916947	178916952	+	inframe_deletion	In_Frame_Del	DEL	ATCCTC	ATCCTC	-			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	142	286	0	ENST00000263967.3:c.335_340delTCCTCA	p.Ile112_Leu113del	p.I112_L113del	ENST00000263967	NM_006218.2	112	ATCCTC/-					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175603	112175604	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	T			P-0000119-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	210	379	0	ENST00000257430.4:c.4312_4313delACinsT	p.Thr1438TyrfsTer35	p.T1438Yfs*35	ENST00000257430	NM_000038.5	1438	ACa/Ta					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001194-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	187	293	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001194-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	144	370	0	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001194-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	144	370	0	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001194-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	156	357	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212576801	212576801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001194-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	217	452	0	ENST00000342788.4:c.1098G>T	p.Leu366Phe	p.L366F	ENST00000342788	NM_005235.2	366	ttG/ttT					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481857	56481857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001194-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	328	575	0	ENST00000267101.3:c.785C>A	p.Pro262His	p.P262H	ENST00000267101	NM_001982.3	262	cCt/cAt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11152055	11152055	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001194-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	76	296	0	ENST00000344626.4:c.4243C>T	p.Arg1415Ter	p.R1415*	ENST00000344626	NM_003072.3	1415	Cga/Tga					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11170453	11170453	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001194-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	101	376	0	ENST00000344626.4:c.4660C>T	p.Gln1554Ter	p.Q1554*	ENST00000344626	NM_003072.3	1554	Cag/Tag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022476	31022476	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200756074		P-0001194-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	49	246	0	ENST00000375687.4:c.1961C>T	p.Ala654Val	p.A654V	ENST00000375687	NM_015338.5	654	gCc/gTc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931346	66931346	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001194-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	159	329	1	ENST00000374690.3:c.1988C>G	p.Ser663Ter	p.S663*	ENST00000374690	NM_000044.3	663	tCa/tGa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55133598	55133598	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	190	576	0	ENST00000257290.5:c.902A>T	p.Glu301Val	p.E301V	ENST00000257290	NM_006206.4	301	gAa/gTa					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101907058	101907058	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001667-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	209	440	0	ENST00000374994.4:c.1019delT	p.Leu340TrpfsTer2	p.L340Wfs*2	ENST00000374994	NM_004612.2	340	Ttg/tg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0004075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	98	330	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0004075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	48	269	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927974	178927974	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	15	112	0	ENST00000263967.3:c.1252G>A	p.Glu418Lys	p.E418K	ENST00000263967	NM_006218.2	418	Gaa/Aaa					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36259161	36259161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	351	399	0	ENST00000300305.3:c.330G>T	p.Lys110Asn	p.K110N	ENST00000300305		110	aaG/aaT					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151859560	151859578	+	frameshift_variant	Frame_Shift_Del	DEL	TTTGCATACGTCTGTTGAT	TTTGCATACGTCTGTTGAT	-			P-0004181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	328	426	0	ENST00000262189.6:c.11084_11102del	p.Asn3695IlefsTer4	p.N3695Ifs*4	ENST00000262189	NM_170606.2	3695	aATCAACAGACGTATGCAAAt/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578521	7578531	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGGCAAAAC	GTTGGCAAAAC	-			P-0004181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	269	318	0	ENST00000269305.4:c.399_409del	p.Met133IlefsTer12	p.M133Ifs*12	ENST00000269305	NM_001126112.2	133	atGTTTTGCCAACtg/attg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68845699	68845699	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	454	481	0	ENST00000261769.5:c.945del	p.Asn315LysfsTer41	p.N315Kfs*41	ENST00000261769	NM_004360.3	315	aaT/aa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16255106	16255107	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0004181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	813	352	0	ENST00000375759.3:c.2372_2373del	p.Thr791ArgfsTer2	p.T791Rfs*2	ENST00000375759	NM_015001.2	791	ACa/a					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248633	59248634	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	430	509	0	ENST00000371222.2:c.109_110delAG	p.Ser37HisfsTer69	p.S37Hfs*69	ENST00000371222	NM_002228.3	37	AGc/c					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	82	209	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	9	446	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243727085	243727085	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	13	574	0	ENST00000263826.5:c.885A>T	p.Glu295Asp	p.E295D	ENST00000263826	NM_005465.4	295	gaA/gaT					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133202288	133202288	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	12	430	0	ENST00000320574.5:c.6600G>C	p.Glu2200Asp	p.E2200D	ENST00000320574	NM_006231.2	2200	gaG/gaC					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039339	49039339	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	23	619	0	ENST00000267163.4:c.2326-2A>G		p.X776_splice	ENST00000267163	NM_000321.2	776						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0000499-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	265	237	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577545	7577554	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCGCCCAT	TGCCGCCCAT	-			P-0000499-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			49	140	222	0	ENST00000269305.4:c.727_736delATGGGCGGCA	p.Met243Ter	p.M243*	ENST00000269305	NM_001126112.2	243	ATGGGCGGCAtg/tg					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575023	64575023	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001509-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	237	215	1	ENST00000337652.1:c.798+1G>T		p.X266_splice	ENST00000337652	NM_130803.2	266						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	105	224	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128199897	128199897	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	65	152	0	ENST00000341105.2:c.1408C>A	p.Pro470Thr	p.P470T	ENST00000341105	NM_032638.4	470	Ccc/Acc					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123197903	123197903	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0004122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	47	287	0	ENST00000218089.9:c.2025+2T>C		p.X675_splice	ENST00000218089	NM_001042749.1	675						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	61	215	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	153	320	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164268	47164268	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	76	309	0	ENST00000409792.3:c.1858C>T	p.Arg620Ter	p.R620*	ENST00000409792	NM_014159.6	620	Cga/Tga					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73355867	73355867	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	59	228	0	ENST00000377767.4:c.104G>C	p.Gly35Ala	p.G35A	ENST00000377767	NM_014953.3	35	gGg/gCg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47677834	47677834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			580	77	266	0	ENST00000347630.2:c.1031C>T	p.Ser344Leu	p.S344L	ENST00000347630	NM_001007230.1	344	tCa/tTa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023553	27023557	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCC	GCGCC	-			P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	92	225	0	ENST00000324856.7:c.659_663del	p.Ser220IlefsTer178	p.S220Ifs*178	ENST00000324856	NM_006015.4	220	aGCGCC/a					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183640	10183654	+	inframe_deletion	In_Frame_Del	DEL	GAGTCCGGCCCGGAA	GAGTCCGGCCCGGAA	-			P-0002663-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	58	305	0	ENST00000256474.2:c.123_137del	p.Ser43_Glu47del	p.S43_E47del	ENST00000256474	NM_000551.3	37	GAGTCCGGCCCGGAA/-					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40367069	40367069	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			734	397	653	0	ENST00000397332.2:c.128A>G	p.Tyr43Cys	p.Y43C	ENST00000397332	NM_001033082.2	43	tAt/tGt					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215645889	215645889	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1281	394	853	1	ENST00000260947.4:c.709C>T	p.Gln237Ter	p.Q237*	ENST00000260947	NM_000465.2	237	Caa/Taa					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69788753	69788753	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	441	369	0	ENST00000352241.4:c.5A>C	p.Gln2Pro	p.Q2P	ENST00000352241	NM_198159.2	2	cAg/cCg					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005365	150005365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	343	550	2	ENST00000253339.5:c.860G>A	p.Arg287Gln	p.R287Q	ENST00000253339		287	cGa/cAa					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	575	405	0	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			109	193	340	0	ENST00000269305.4:c.481G>T	p.Ala161Ser	p.A161S	ENST00000269305	NM_001126112.2	161	Gcc/Tcc					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17129563	17129563	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	350	595	0	ENST00000285071.4:c.323G>T	p.Ser108Ile	p.S108I	ENST00000285071	NM_144997.5	108	aGc/aTc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173669	112173670	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	219	342	0	ENST00000257430.4:c.2379_2380del	p.Tyr796TrpfsTer2	p.Y796Wfs*2	ENST00000257430	NM_000038.5	793	cAA/c					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175752	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	TTTA	TTTA	-			P-0001150-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	163	280	0	ENST00000257430.4:c.4463_4466del	p.Leu1488TyrfsTer18	p.L1488Yfs*18	ENST00000257430	NM_000038.5	1487	acTTTA/ac					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30054241	30054241	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002786-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	181	424	0	ENST00000338641.4:c.663C>A	p.Tyr221Ter	p.Y221*	ENST00000338641	NM_000268.3	221	taC/taA					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101254	27101254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			644	216	379	0	ENST00000324856.7:c.4536G>T	p.Gln1512His	p.Q1512H	ENST00000324856	NM_006015.4	1512	caG/caT					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152265352	152265352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142712646		P-0000323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			689	40	207	0	ENST00000206249.3:c.805C>T	p.Arg269Cys	p.R269C	ENST00000206249	NM_000125.3	269	Cgc/Tgc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2976828	2976828	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1118	191	424	0	ENST00000396946.4:c.1184A>T	p.Gln395Leu	p.Q395L	ENST00000396946	NM_032415.4	395	cAg/cTg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49037877	49037877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	162	647	0	ENST00000267163.4:c.2117G>A	p.Cys706Tyr	p.C706Y	ENST00000267163	NM_000321.2	706	tGt/tAt					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88726685	88726685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	162	355	0	ENST00000360948.2:c.359C>A	p.Pro120His	p.P120H	ENST00000360948	NM_001012338.2	120	cCc/cAc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3786706	3786706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1256	241	622	0	ENST00000262367.5:c.4505G>T	p.Trp1502Leu	p.W1502L	ENST00000262367	NM_004380.2	1502	tGg/tTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	487	439	0	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39535320	39535320	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	320	326	0	ENST00000262039.4:c.64A>T	p.Lys22Ter	p.K22*	ENST00000262039	NM_002647.2	22	Aag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602767	10602767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	482	280	2	ENST00000171111.5:c.811G>A	p.Val271Met	p.V271M	ENST00000171111	NM_203500.1	271	Gtg/Atg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76814318	76814318	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	422	554	0	ENST00000373344.5:c.6327-1G>T		p.X2109_splice	ENST00000373344	NM_000489.3	2109						NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618777	37618792	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGCGTTCGAATGAG	AAAGCGTTCGAATGAG	-			P-0000323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			751	168	436	0	ENST00000447079.4:c.453_468delAAAGCGTTCGAATGAG	p.Lys152ArgfsTer10	p.K152Rfs*10	ENST00000447079	NM_015083.1	151	tcAAAGCGTTCGAATGAG/tc					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39746871	39746871	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	84	274	0	ENST00000361337.2:c.1885delC	p.Leu629PhefsTer16	p.L629Ffs*16	ENST00000361337	NM_003286.2	629	Ctt/tt					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64129429	64129430	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0000323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	255	352	0	ENST00000334205.4:c.861_862delGGinsCT	p.Gly288Trp	p.G288W	ENST00000334205	NM_003942.2	287	gcGGgg/gcCTgg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			103	73	106	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72428467	72428467	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	153	631	0	ENST00000477973.2:c.535G>C	p.Glu179Asp	p.E179D	ENST00000477973	NM_012234.5	179	gaG/gaC					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152009032	152009032	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	173	203	0	ENST00000262189.6:c.591-1G>A		p.X197_splice	ENST00000262189	NM_170606.2	197						NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152055756	152055756	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	99	363	0	ENST00000262189.6:c.166C>T	p.Arg56Ter	p.R56*	ENST00000262189	NM_170606.2	56	Cga/Tga					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562293	21562293	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	97	492	0	ENST00000382592.4:c.1626G>C	p.Gln542His	p.Q542H	ENST00000382592	NM_014572.2	542	caG/caC					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39584436	39584436	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	80	322	0	ENST00000262039.4:c.1101A>T	p.Leu367Phe	p.L367F	ENST00000262039	NM_002647.2	367	ttA/ttT					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39817469	39817469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	103	382	0	ENST00000288319.7:c.94G>C	p.Glu32Gln	p.E32Q	ENST00000288319	NM_182918.3	32	Gag/Cag					NEWRECORD																																																																									
CRKL	0	MSKCC	GRCh37	22	21288090	21288090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	99	321	0	ENST00000354336.3:c.335C>G	p.Ser112Cys	p.S112C	ENST00000354336	NM_005207.3	112	tCt/tGt					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44918276	44918276	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	104	194	0	ENST00000377967.4:c.901C>T	p.Gln301Ter	p.Q301*	ENST00000377967	NM_021140.2	301	Cag/Tag					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44922731	44922731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	138	257	0	ENST00000377967.4:c.1592C>T	p.Ser531Leu	p.S531L	ENST00000377967	NM_021140.2	531	tCa/tTa					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123181326	123181326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			63	112	160	0	ENST00000218089.9:c.790C>A	p.Leu264Ile	p.L264I	ENST00000218089	NM_001042749.1	264	Cta/Ata					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140487379	140487379	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	253	401	0	ENST00000288602.6:c.1146G>C	p.Leu382Phe	p.L382F	ENST00000288602	NM_004333.4	382	ttG/ttC					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333723	70333723	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	110	429	0	ENST00000373644.4:c.1628G>C	p.Arg543Thr	p.R543T	ENST00000373644	NM_030625.2	543	aGa/aCa					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007747	45007747	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	102	248	0	ENST00000558401.1:c.194G>T	p.Arg65Ile	p.R65I	ENST00000558401	NM_004048.2	65	aGa/aTa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41553236	41553236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	72	402	0	ENST00000263253.7:c.3325G>A	p.Gly1109Arg	p.G1109R	ENST00000263253	NM_001429.3	1109	Gga/Aga					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41556707	41556707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	57	254	0	ENST00000263253.7:c.3652G>A	p.Asp1218Asn	p.D1218N	ENST00000263253	NM_001429.3	1218	Gac/Aac					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41566451	41566451	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	98	391	0	ENST00000263253.7:c.4328G>C	p.Gly1443Ala	p.G1443A	ENST00000263253	NM_001429.3	1443	gGa/gCa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41568584	41568584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000217-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	84	301	0	ENST00000263253.7:c.4534G>T	p.Val1512Phe	p.V1512F	ENST00000263253	NM_001429.3	1512	Gtt/Ttt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			47	282	411	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	239	278	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0003846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	44	413	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163696	32163696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	26	253	1	ENST00000375023.3:c.5530C>G	p.Arg1844Gly	p.R1844G	ENST00000375023	NM_004557.3	1844	Cgg/Ggg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106621	27106621	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	352	452	0	ENST00000324856.7:c.6232G>T	p.Glu2078Ter	p.E2078*	ENST00000324856	NM_006015.4	2078	Gag/Tag					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89462305	89462305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	201	418	0	ENST00000336596.2:c.1777C>A	p.Leu593Ile	p.L593I	ENST00000336596	NM_005233.5	593	Ctc/Atc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140494163	140494163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	194	312	0	ENST00000288602.6:c.1085G>T	p.Arg362Leu	p.R362L	ENST00000288602	NM_004333.4	362	cGa/cTa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8486245	8486245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	162	418	0	ENST00000356435.5:c.2572C>A	p.Leu858Ile	p.L858I	ENST00000356435		858	Cta/Ata					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974724	21974724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	177	385	1	ENST00000304494.5:c.103G>T	p.Gly35Trp	p.G35W	ENST00000304494	NM_000077.4	35	Ggg/Tgg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974724	21974724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	177	385	1	ENST00000304494.5:c.103G>T	p.Gly35Trp	p.G35W	ENST00000304494	NM_000077.4	35	Ggg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574020	7574020	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	213	558	0	ENST00000269305.4:c.1007A>G	p.Glu336Gly	p.E336G	ENST00000269305	NM_001126112.2	336	gAg/gGg					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022628	31022628	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1065	317	561	0	ENST00000375687.4:c.2113G>T	p.Glu705Ter	p.E705*	ENST00000375687	NM_015338.5	705	Gag/Tag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022697	31022697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	218	377	0	ENST00000375687.4:c.2182G>A	p.Glu728Lys	p.E728K	ENST00000375687	NM_015338.5	728	Gaa/Aaa					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023105	31023105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			966	296	500	0	ENST00000375687.4:c.2590G>A	p.Asp864Asn	p.D864N	ENST00000375687	NM_015338.5	864	Gac/Aac					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023347	31023347	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			771	220	376	0	ENST00000375687.4:c.2832G>C	p.Leu944Phe	p.L944F	ENST00000375687	NM_015338.5	944	ttG/ttC					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023684	31023684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			979	262	481	0	ENST00000375687.4:c.3169G>A	p.Asp1057Asn	p.D1057N	ENST00000375687	NM_015338.5	1057	Gat/Aat					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023740	31023740	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			851	208	392	0	ENST00000375687.4:c.3225G>T	p.Lys1075Asn	p.K1075N	ENST00000375687	NM_015338.5	1075	aaG/aaT					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023747	31023747	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			853	211	379	0	ENST00000375687.4:c.3232G>C	p.Asp1078His	p.D1078H	ENST00000375687	NM_015338.5	1078	Gat/Cat					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023870	31023870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			939	273	444	0	ENST00000375687.4:c.3355G>C	p.Glu1119Gln	p.E1119Q	ENST00000375687	NM_015338.5	1119	Gag/Cag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31024074	31024074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			967	274	422	0	ENST00000375687.4:c.3559G>T	p.Gly1187Cys	p.G1187C	ENST00000375687	NM_015338.5	1187	Ggt/Tgt					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31024146	31024146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1044	255	456	0	ENST00000375687.4:c.3631G>A	p.Asp1211Asn	p.D1211N	ENST00000375687	NM_015338.5	1211	Gac/Aac					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31024197	31024197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1100	262	498	1	ENST00000375687.4:c.3682G>A	p.Glu1228Lys	p.E1228K	ENST00000375687	NM_015338.5	1228	Gaa/Aaa					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31024236	31024236	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1061	288	531	0	ENST00000375687.4:c.3721G>A	p.Glu1241Lys	p.E1241K	ENST00000375687	NM_015338.5	1241	Gaa/Aaa					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31025054	31025054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			928	232	350	0	ENST00000375687.4:c.4539G>T	p.Met1513Ile	p.M1513I	ENST00000375687	NM_015338.5	1513	atG/atT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	197	520	1	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579585	7579585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002394-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	71	328	0	ENST00000269305.4:c.102del	p.Leu35CysfsTer9	p.L35Cfs*9	ENST00000269305	NM_001126112.2	34	ccC/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	38	309	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	21	272	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106661	27106661	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	49	314	0	ENST00000324856.7:c.6272G>A	p.Trp2091Ter	p.W2091*	ENST00000324856	NM_006015.4	2091	tGg/tAg					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48028106	48028106	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	26	317	0	ENST00000234420.5:c.2984A>C	p.Glu995Ala	p.E995A	ENST00000234420	NM_000179.2	995	gAg/gCg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163764	32163764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	68	225	0	ENST00000375023.3:c.5462G>T	p.Gly1821Val	p.G1821V	ENST00000375023	NM_004557.3	1821	gGg/gTg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118377160	118377160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	50	420	1	ENST00000534358.1:c.10553C>T	p.Ser3518Phe	p.S3518F	ENST00000534358	NM_005933.3	3518	tCt/tTt					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0004673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	56	533	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212578294	212578294	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	55	676	0	ENST00000342788.4:c.963A>C	p.Lys321Asn	p.K321N	ENST00000342788	NM_005235.2	321	aaA/aaC					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	21	534	1	ENST00000342988.3:c.1082G>T	p.Arg361Leu	p.R361L	ENST00000342988	NM_005359.5	361	cGc/cTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	94	192	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085690	16085690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	114	379	0	ENST00000281043.3:c.866C>A	p.Ser289Tyr	p.S289Y	ENST00000281043	NM_005378.4	289	tCc/tAc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692812	89692820	+	inframe_deletion	In_Frame_Del	DEL	AACTTATCA	AACTTATCA	-			P-0003552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	64	144	0	ENST00000371953.3:c.299_307del	p.Leu100_Lys102del	p.L100_K102del	ENST00000371953	NM_000314.4	99	gAACTTATCAaa/gaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000776-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	248	181	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226567309	226567309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000776-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	354	274	0	ENST00000366794.5:c.1577C>T	p.Thr526Ile	p.T526I	ENST00000366794	NM_001618.3	526	aCt/aTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001559-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	58	187	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69229651	69229651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001559-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1004	108	284	0	ENST00000462284.1:c.727G>C	p.Asp243His	p.D243H	ENST00000462284	NM_002392.5	243	Gat/Cat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	150	613	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	19	278	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242794106	242794106	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs148456597		P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	55	562	0	ENST00000334409.5:c.622C>A	p.Pro208Thr	p.P208T	ENST00000334409	NM_005018.2	208	Ccc/Acc					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55129962	55129962	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			492	51	613	0	ENST00000257290.5:c.496G>T	p.Gly166Trp	p.G166W	ENST00000257290	NM_006206.4	166	Ggg/Tgg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187525547	187525547	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	34	633	0	ENST00000441802.2:c.10532A>C	p.Tyr3511Ser	p.Y3511S	ENST00000441802	NM_005245.3	3511	tAc/tCc					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149499592	149499592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	58	528	0	ENST00000261799.4:c.2681G>T	p.Trp894Leu	p.W894L	ENST00000261799	NM_002609.3	894	tGg/tTg					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149504352	149504352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			461	65	429	0	ENST00000261799.4:c.1850C>A	p.Ala617Asp	p.A617D	ENST00000261799	NM_002609.3	617	gCc/gAc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878816	151878816	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	39	483	0	ENST00000262189.6:c.6129T>A	p.Phe2043Leu	p.F2043L	ENST00000262189	NM_170606.2	2043	ttT/ttA					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94194204	94194204	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	38	571	0	ENST00000323929.3:c.1226-2A>G		p.X409_splice	ENST00000323929	NM_005591.3	409						NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133249302	133249302	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	109	559	0	ENST00000320574.5:c.1597G>T	p.Val533Leu	p.V533L	ENST00000320574	NM_006231.2	533	Gtg/Ttg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88472524	88472524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	54	556	1	ENST00000360948.2:c.2031C>A	p.His677Gln	p.H677Q	ENST00000360948	NM_001012338.2	677	caC/caA					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23647209	23647209	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	55	688	0	ENST00000261584.4:c.658A>T	p.Ser220Cys	p.S220C	ENST00000261584	NM_024675.3	220	Agt/Tgt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41385108	41385108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	39	507	0	ENST00000373198.4:c.853G>T	p.Val285Leu	p.V285L	ENST00000373198	NM_133170.3	285	Gtg/Ttg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76777741	76777741	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	54	666	0	ENST00000373344.5:c.6975G>T	p.Glu2325Asp	p.E2325D	ENST00000373344	NM_000489.3	2325	gaG/gaT					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	31	303	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76874314	76874314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002619-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	90	411	0	ENST00000373344.5:c.5408G>A	p.Arg1803His	p.R1803H	ENST00000373344	NM_000489.3	1803	cGt/cAt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772294	68772303	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCCGCGT	GAGGCCGCGT	-			P-0002619-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			122	32	426	0	ENST00000261769.5:c.143_152del	p.Arg48ThrfsTer5	p.R48Tfs*5	ENST00000261769	NM_004360.3	48	aGAGGCCGCGTc/ac					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103514605	103514605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	244	267	1	ENST00000355739.4:c.1106C>T	p.Ala369Val	p.A369V	ENST00000355739	NM_000123.3	369	gCc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577573	7577573	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0004416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	485	322	0	ENST00000269305.4:c.708C>G	p.Tyr236Ter	p.Y236*	ENST00000269305	NM_001126112.2	236	taC/taG					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152055696	152055696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	12	568	0	ENST00000262189.6:c.226G>A	p.Glu76Lys	p.E76K	ENST00000262189	NM_170606.2	76	Gaa/Aaa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15974926	15974926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	10	472	0	ENST00000268712.3:c.3949C>A	p.Gln1317Lys	p.Q1317K	ENST00000268712	NM_006311.3	1317	Caa/Aaa					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123195680	123195680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	17	285	0	ENST00000218089.9:c.1594G>T	p.Ala532Ser	p.A532S	ENST00000218089	NM_001042749.1	532	Gcg/Tcg					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061220	38061225	+	inframe_deletion	In_Frame_Del	DEL	CGTTCT	CGTTCT	-			P-0004522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	195	309	0	ENST00000250448.2:c.764_769del	p.Glu255_Asn256del	p.E255_N256del	ENST00000250448	NM_004496.3	255	gAGAACGgc/ggc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27089737	27089737	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	22	243	0	ENST00000324856.7:c.2693del	p.Ala898ValfsTer21	p.A898Vfs*21	ENST00000324856	NM_006015.4	898	gCt/gt					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88726685	88726685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	219	475	0	ENST00000360948.2:c.359C>A	p.Pro120His	p.P120H	ENST00000360948	NM_001012338.2	120	cCc/cAc					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162740138	162740138	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	478	542	0	ENST00000367921.3:c.1340T>A	p.Leu447Gln	p.L447Q	ENST00000367921	NM_006182.2	447	cTg/cAg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198281472	198281472	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	78	436	0	ENST00000335508.6:c.659A>G	p.Gln220Arg	p.Q220R	ENST00000335508	NM_012433.2	220	cAg/cGg					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89156936	89156936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	85	636	0	ENST00000336596.2:c.38G>A	p.Cys13Tyr	p.C13Y	ENST00000336596	NM_005233.5	13	tGc/tAc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521679	89521679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	74	483	0	ENST00000336596.2:c.2756G>T	p.Trp919Leu	p.W919L	ENST00000336596	NM_005233.5	919	tGg/tTg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142188394	142188394	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	155	319	0	ENST00000350721.4:c.6337G>C	p.Val2113Leu	p.V2113L	ENST00000350721	NM_001184.3	2113	Gta/Cta					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55964325	55964325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	173	609	0	ENST00000263923.4:c.2488C>A	p.Pro830Thr	p.P830T	ENST00000263923	NM_002253.2	830	Ccc/Acc					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153244249	153244249	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	83	420	0	ENST00000281708.4:c.1908T>A	p.Phe636Leu	p.F636L	ENST00000281708	NM_033632.3	636	ttT/ttA					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630759	187630759	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	129	708	0	ENST00000441802.2:c.223G>T	p.Val75Phe	p.V75F	ENST00000441802	NM_005245.3	75	Gtt/Ttt					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176665415	176665415	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	208	467	1	ENST00000439151.2:c.4099G>C	p.Glu1367Gln	p.E1367Q	ENST00000439151	NM_022455.4	1367	Gag/Cag					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	394949	394949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	115	329	0	ENST00000380956.4:c.345G>T	p.Gln115His	p.Q115H	ENST00000380956	NM_001195286.1	115	caG/caT					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157469985	157469985	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	87	358	0	ENST00000346085.5:c.2779G>T	p.Gly927Ter	p.G927*	ENST00000346085	NM_020732.3	927	Gga/Tga					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29560109	29560109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	113	465	0	ENST00000358273.4:c.3586C>T	p.Leu1196Phe	p.L1196F	ENST00000358273	NM_001042492.2	1196	Ctt/Ttt					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78820303	78820303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	98	500	0	ENST00000306801.3:c.1243G>A	p.Ala415Thr	p.A415T	ENST00000306801	NM_020761.2	415	Gca/Aca					NEWRECORD																																																																									
BCL2	0	MSKCC	GRCh37	18	60795890	60795890	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	189	481	0	ENST00000333681.4:c.688A>G	p.Ile230Val	p.I230V	ENST00000333681		230	Atc/Gtc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17954635	17954635	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	160	456	0	ENST00000458235.1:c.259A>G	p.Ile87Val	p.I87V	ENST00000458235	NM_000215.3	87	Atc/Gtc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31380513	31380513	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	184	542	0	ENST00000328111.2:c.1003T>A	p.Trp335Arg	p.W335R	ENST00000328111	NM_006892.3	335	Tgg/Agg					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100615113	100615113	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	128	664	0	ENST00000308731.7:c.802T>A	p.Tyr268Asn	p.Y268N	ENST00000308731	NM_000061.2	268	Tat/Aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	179	388	0	ENST00000269305.4:c.461delG	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	154	gGc/gc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41101030	41101030	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	191	458	0	ENST00000373198.4:c.1326del	p.Thr443ProfsTer14	p.T443Pfs*14	ENST00000373198	NM_133170.3	442	caG/ca					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89468490	89468490	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000600-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			856	116	235	0	ENST00000336596.2:c.2024G>T	p.Gly675Val	p.G675V	ENST00000336596	NM_005233.5	675	gGa/gTa					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69462780	69462780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000600-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	257	325	0	ENST00000227507.2:c.593A>G	p.Asn198Ser	p.N198S	ENST00000227507	NM_053056.2	198	aAt/aGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	152	221	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9776125	9776125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	32	109	0	ENST00000377346.4:c.589G>C	p.Glu197Gln	p.E197Q	ENST00000377346	NM_005026.3	197	Gag/Cag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32899248	32899248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	92	266	0	ENST00000380152.3:c.352C>T	p.Arg118Cys	p.R118C	ENST00000380152		118	Cgc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			595	277	594	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	70	403	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65335021	65335021	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	136	568	0	ENST00000342505.4:c.620A>T	p.Gln207Leu	p.Q207L	ENST00000342505	NM_002227.2	207	cAg/cTg					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135786479	135786479	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	119	514	0	ENST00000298552.3:c.1051A>G	p.Met351Val	p.M351V	ENST00000298552	NM_001162426.1	351	Atg/Gtg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88679723	88679723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	71	573	0	ENST00000360948.2:c.740G>C	p.Gly247Ala	p.G247A	ENST00000360948	NM_001012338.2	247	gGg/gCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578400	7578400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	45	397	0	ENST00000269305.4:c.530C>G	p.Pro177Arg	p.P177R	ENST00000269305	NM_001126112.2	177	cCc/cGc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53226008	53226008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	79	681	1	ENST00000375401.3:c.2841G>T	p.Leu947Phe	p.L947F	ENST00000375401	NM_004187.3	947	ttG/ttT					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123185204	123185204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			749	156	693	2	ENST00000218089.9:c.1156G>T	p.Val386Phe	p.V386F	ENST00000218089	NM_001042749.1	386	Gtt/Ttt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0002778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			153	318	513	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	406	398	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157792	106157792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	99	388	1	ENST00000380013.4:c.2693G>A	p.Gly898Glu	p.G898E	ENST00000380013	NM_001127208.2	898	gGa/gAa					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36171760	36171760	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0002778-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	186	300	0	ENST00000300305.3:c.806-1G>C		p.X269_splice	ENST00000300305		269						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	42	129	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	101	323	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178096252	178096252	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	77	177	0	ENST00000397062.3:c.1079C>G	p.Ser360Ter	p.S360*	ENST00000397062	NM_006164.4	360	tCa/tGa					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1293639	1293639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			341	208	218	0	ENST00000310581.5:c.1362G>T	p.Gln454His	p.Q454H	ENST00000310581	NM_198253.2	454	caG/caT					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57751386	57751386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	110	234	0	ENST00000274289.3:c.1605G>A	p.Met535Ile	p.M535I	ENST00000274289	NM_006622.3	535	atG/atA					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149433706	149433706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	99	273	0	ENST00000286301.3:c.2845G>A	p.Glu949Lys	p.E949K	ENST00000286301	NM_005211.3	949	Gag/Aag					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20402803	20402803	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			82	12	42	0	ENST00000346618.3:c.340C>T	p.Gln114Ter	p.Q114*	ENST00000346618	NM_001949.4	114	Cag/Tag					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391284	139391284	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	72	300	0	ENST00000277541.6:c.6907A>T	p.Ser2303Cys	p.S2303C	ENST00000277541	NM_017617.3	2303	Agt/Tgt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108150330	108150330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	23	212	0	ENST00000278616.4:c.3397G>C	p.Glu1133Gln	p.E1133Q	ENST00000278616	NM_000051.3	1133	Gaa/Caa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108198472	108198472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	56	197	0	ENST00000278616.4:c.7076C>T	p.Thr2359Ile	p.T2359I	ENST00000278616	NM_000051.3	2359	aCc/aTc					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102811633	102811633	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1012	137	425	0	ENST00000307046.8:c.551G>C	p.Ser184Thr	p.S184T	ENST00000307046	NM_001111285.1	184	aGt/aCt					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	71	235	0	ENST00000307102.5:c.171G>C	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaC					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44922680	44922680	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	94	313	1	ENST00000377967.4:c.1541G>C	p.Gly514Ala	p.G514A	ENST00000377967	NM_021140.2	514	gGa/gCa					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53243893	53243893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			718	99	352	2	ENST00000375401.3:c.1100G>T	p.Arg367Leu	p.R367L	ENST00000375401	NM_004187.3	367	cGg/cTg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339551	70339551	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			789	113	391	0	ENST00000374080.3:c.220A>T	p.Ser74Cys	p.S74C	ENST00000374080		74	Agc/Tgc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937995	76937995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			754	69	371	0	ENST00000373344.5:c.2753C>A	p.Thr918Asn	p.T918N	ENST00000373344	NM_000489.3	918	aCt/aAt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939693	76939693	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			853	106	393	0	ENST00000373344.5:c.1055T>G	p.Met352Arg	p.M352R	ENST00000373344	NM_000489.3	352	aTg/aGg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123199756	123199756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			580	77	333	0	ENST00000218089.9:c.2056C>G	p.Gln686Glu	p.Q686E	ENST00000218089	NM_001042749.1	686	Cag/Gag					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158700	26158700	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	20	61	0	ENST00000289316.2:c.303del	p.Leu102CysfsTer33	p.L102Cfs*33	ENST00000289316	NM_138720.2	101	ctG/ct					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44513213	44513213	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	37	104	0	ENST00000291552.4:c.722G>C	p.Ter241SerextTer10	p.*241Sext*10	ENST00000291552	NM_006758.2	241	tGa/tCa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939461	76939462	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0002859-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			733	59	380	0	ENST00000373344.5:c.1286_1287delinsAA	p.Thr429Lys	p.T429K	ENST00000373344	NM_000489.3	429	aCC/aAA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	110	520	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106520088	106520088	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	34	273	0	ENST00000359195.3:c.2516G>T	p.Arg839Leu	p.R839L	ENST00000359195	NM_002649.2	839	cGc/cTc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8319844	8319844	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	81	591	0	ENST00000356435.5:c.5657T>C	p.Met1886Thr	p.M1886T	ENST00000356435		1886	aTg/aCg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133242014	133242014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			260	70	351	1	ENST00000320574.5:c.2342C>T	p.Ala781Val	p.A781V	ENST00000320574	NM_006231.2	781	gCg/gTg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220715	1220715	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	75	398	0	ENST00000326873.7:c.733C>T	p.Leu245Phe	p.L245F	ENST00000326873	NM_000455.4	245	Ctc/Ttc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602572	10602572	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	51	405	0	ENST00000171111.5:c.1006C>T	p.Arg336Ter	p.R336*	ENST00000171111	NM_203500.1	336	Cga/Tga					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11129700	11129700	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	66	444	0	ENST00000344626.4:c.2505+1G>T		p.X835_splice	ENST00000344626	NM_003072.3	835						NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39795353	39795353	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187337793		P-0000989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	72	562	0	ENST00000288319.7:c.367C>T	p.Arg123Cys	p.R123C	ENST00000288319	NM_182918.3	123	Cgc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001346-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	220	371	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001346-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	199	302	1	ENST00000269305.4:c.434T>C	p.Leu145Pro	p.L145P	ENST00000269305	NM_001126112.2	145	cTg/cCg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11143984	11143984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001346-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	157	198	0	ENST00000344626.4:c.3565C>T	p.Arg1189Ter	p.R1189*	ENST00000344626	NM_003072.3	1189	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175908	112175917	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGCAGCCT	AGAGCAGCCT	-			P-0001346-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	164	174	0	ENST00000257430.4:c.4618_4627del	p.Glu1540LysfsTer22	p.E1540Kfs*22	ENST00000257430	NM_000038.5	1539	tcAGAGCAGCCT/tc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	100	393	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	123	464	0	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175136	112175136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	104	447	0	ENST00000257430.4:c.3845C>A	p.Ser1282Ter	p.S1282*	ENST00000257430	NM_000038.5	1282	tCa/tAa					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149441393	149441393	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	33	663	1	ENST00000286301.3:c.1646G>A	p.Arg549His	p.R549H	ENST00000286301	NM_005211.3	549	cGc/cAc					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103524624	103524624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1288	189	941	2	ENST00000355739.4:c.2755C>T	p.Arg919Trp	p.R919W	ENST00000355739	NM_000123.3	919	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	105	500	1	ENST00000269305.4:c.559G>C	p.Gly187Arg	p.G187R	ENST00000269305	NM_001126112.2	187	Ggt/Cgt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5214729	5214729	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	140	667	0	ENST00000357368.4:c.4337A>G	p.Tyr1446Cys	p.Y1446C	ENST00000357368	NM_002850.3	1446	tAc/tGc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48603039	48603066	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAGCAGCAGGCGGCTACTGCACAAGC	TGCAGCAGCAGGCGGCTACTGCACAAGC	-			P-0004441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	135	478	0	ENST00000342988.3:c.1349_1376del	p.Gln450LeufsTer17	p.Q450Lfs*17	ENST00000342988	NM_005359.5	447	aTGCAGCAGCAGGCGGCTACTGCACAAGCt/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			104	44	378	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248385	59248385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	35	185	0	ENST00000371222.2:c.358G>A	p.Glu120Lys	p.E120K	ENST00000371222	NM_002228.3	120	Gaa/Aaa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133237689	133237689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	48	462	0	ENST00000320574.5:c.2926C>T	p.Arg976Cys	p.R976C	ENST00000320574	NM_006231.2	976	Cgc/Tgc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0001771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			60	12	286	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78426054	78426067	+	frameshift_variant	Frame_Shift_Del	DEL	GATTATAAGGTGCA	GATTATAAGGTGCA	-			P-0003446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	39	378	0	ENST00000370768.2:c.1458_1471del	p.Ala487TrpfsTer33	p.A487Wfs*33	ENST00000370768	NM_003902.3	486	ccTGCACCTTATAATCct/ccct					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241676926	241676926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002999-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	173	532	1	ENST00000366560.3:c.355G>A	p.Ala119Thr	p.A119T	ENST00000366560	NM_000143.3	119	Gca/Aca					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176673736	176673736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002999-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	176	520	2	ENST00000439151.2:c.4436C>T	p.Ala1479Val	p.A1479V	ENST00000439151	NM_022455.4	1479	gCc/gTc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55221711	55221711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002999-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	14	435	0	ENST00000275493.2:c.755G>A	p.Arg252His	p.R252H	ENST00000275493	NM_005228.3	252	cGc/cAc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29004241	29004241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002999-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	126	606	0	ENST00000282397.4:c.1052G>A	p.Arg351Gln	p.R351Q	ENST00000282397	NM_002019.4	351	cGg/cAg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16265908	16265908	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000004-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	73	1071	0	ENST00000375759.3:c.10981A>T	p.Ile3661Phe	p.I3661F	ENST00000375759	NM_015001.2	3661	Att/Ttt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945083	151945083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000004-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	11	193	0	ENST00000262189.6:c.2436G>A	p.Met812Ile	p.M812I	ENST00000262189	NM_170606.2	812	atG/atA					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000004-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	244	711	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578503	7578518	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGGCAGGTCTTGGC	CAGGGCAGGTCTTGGC	-			P-0000004-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	58	600	0	ENST00000269305.4:c.412_427delGCCAAGACCTGCCCTG	p.Ala138CysfsTer27	p.A138Cfs*27	ENST00000269305	NM_001126112.2	138	GCCAAGACCTGCCCTGtg/tg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49442440	49442440	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0001517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	204	780	0	ENST00000301067.7:c.4131+2T>C		p.X1377_splice	ENST00000301067	NM_003482.3	1377						NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593610	55593613	+	missense_variant	Missense_Mutation	ONP	TTGT	TTGT	CTGA			P-0001517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			274	131	694	2	ENST00000288135.5:c.1676_1679delinsCTGA	p.Val559_Val560delinsAlaAsp	p.V559_V560delinsAD	ENST00000288135	NM_000222.2	559	gTTGTt/gCTGAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	111	542	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			614	249	415	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89391214	89391214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	48	243	0	ENST00000336596.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000336596	NM_005233.5	427	gCg/gTg					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43607555	43607555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201553718		P-0002565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	102	326	0	ENST00000355710.3:c.1531G>A	p.Glu511Lys	p.E511K	ENST00000355710	NM_020975.4	511	Gag/Aag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	95	478	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	450	330	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0003527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	109	245	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578520	7578520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	145	253	0	ENST00000269305.4:c.410T>A	p.Leu137Gln	p.L137Q	ENST00000269305	NM_001126112.2	137	cTg/cAg					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243668598	243668598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	90	299	0	ENST00000263826.5:c.1393C>T	p.Arg465Trp	p.R465W	ENST00000263826	NM_005465.4	465	Cgg/Tgg					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143159015	143159015	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0003527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	75	250	0	ENST00000262992.4:c.836+2T>C		p.X279_splice	ENST00000262992	NM_001101669.1	279						NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112919929	112919929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	56	127	0	ENST00000351677.2:c.1144G>A	p.Val382Ile	p.V382I	ENST00000351677	NM_002834.3	382	Gtc/Atc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0001690-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	159	402	1	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0001690-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			621	126	405	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66535373	66535373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001690-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	79	391	0	ENST00000273854.3:c.88G>A	p.Gly30Ser	p.G30S	ENST00000273854	NM_004439.5	30	Ggc/Agc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001690-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	215	400	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149460417	149460417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001690-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	106	507	0	ENST00000286301.3:c.220G>A	p.Ala74Thr	p.A74T	ENST00000286301	NM_005211.3	74	Gct/Act					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001690-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	307	553	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577505	7577505	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002227-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	313	209	0	ENST00000269305.4:c.776A>T	p.Asp259Val	p.D259V	ENST00000269305	NM_001126112.2	259	gAc/gTc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70344641	70344641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002227-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1048	112	448	0	ENST00000374080.3:c.2002A>G	p.Ile668Val	p.I668V	ENST00000374080		668	Att/Gtt					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245456	153245457	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0002227-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	67	342	0	ENST00000281708.4:c.1734_1735del	p.Gly579AlafsTer25	p.G579Afs*25	ENST00000281708	NM_033632.3	578	acAGgg/acgg					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189456527	189456527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000555-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	113	195	0	ENST00000264731.3:c.288C>G	p.Ile96Met	p.I96M	ENST00000264731	NM_003722.4	96	atC/atG					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039225	49039225	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000555-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	466	298	0	ENST00000267163.4:c.2306delT	p.Leu769CysfsTer41	p.L769Cfs*41	ENST00000267163	NM_000321.2	768	aTt/at					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	219	396	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40500451	40500451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	396	495	0	ENST00000264657.5:c.84G>C	p.Met28Ile	p.M28I	ENST00000264657	NM_139276.2	28	atG/atC					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3828151	3828151	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	236	347	0	ENST00000262367.5:c.1974del	p.Tyr659ThrfsTer7	p.Y659Tfs*7	ENST00000262367	NM_004380.2	658	atC/at					NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0003160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	66	418	0	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0003160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	113	272	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93956511	93956511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0003160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	128	479	0	ENST00000369303.4:c.2725A>T	p.Arg909Trp	p.R909W	ENST00000369303	NM_004440.3	909	Agg/Tgg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0003160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	88	248	0	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207120	1207120	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	59	308	0	ENST00000326873.7:c.208G>T	p.Glu70Ter	p.E70*	ENST00000326873	NM_000455.4	70	Gag/Tag					NEWRECORD																																																																									
CD79A	0	MSKCC	GRCh37	19	42384946	42384946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	131	424	0	ENST00000221972.3:c.580G>A	p.Asp194Asn	p.D194N	ENST00000221972	NM_021601.3	194	Gac/Aac					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306562	41306562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	59	332	0	ENST00000373198.4:c.1097G>A	p.Gly366Asp	p.G366D	ENST00000373198	NM_133170.3	366	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000661-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			75	14	62	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000661-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			296	10	467	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246436	105246436	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000661-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			159	116	388	0	ENST00000349310.3:c.164T>A	p.Phe55Tyr	p.F55Y	ENST00000349310	NM_001014432.1	55	tTc/tAc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458750	120458751	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0000661-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			101	19	144	0	ENST00000256646.2:c.6594_6595delAC	p.Leu2199IlefsTer4	p.L2199Ifs*4	ENST00000256646	NM_024408.3	2198	gcACta/gcta					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651496	52651496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	120	630	1	ENST00000394830.3:c.1600C>T	p.Arg534Ter	p.R534*	ENST00000394830	NM_018313.4	534	Cga/Tga					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21555655	21555655	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	79	553	0	ENST00000382592.4:c.2615C>G	p.Ser872Ter	p.S872*	ENST00000382592	NM_014572.2	872	tCa/tGa					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226573330	226573330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001934-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	51	168	0	ENST00000366794.5:c.886G>A	p.Glu296Lys	p.E296K	ENST00000366794	NM_001618.3	296	Gag/Aag					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61724058	61724058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001934-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	225	252	0	ENST00000401558.2:c.844C>A	p.Gln282Lys	p.Q282K	ENST00000401558	NM_003400.3	282	Caa/Aaa					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12032474	12032474	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001934-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	117	150	0	ENST00000353533.5:c.910C>T	p.Arg304Ter	p.R304*	ENST00000353533	NM_003010.3	304	Cga/Tga					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001934-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	54	249	0	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176064	112176064	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001934-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	166	218	0	ENST00000257430.4:c.4778del	p.Lys1593SerfsTer57	p.K1593Sfs*57	ENST00000257430	NM_000038.5	1591	gcA/gc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0002308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	195	505	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0002308-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	125	366	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0000911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			214	598	415	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720649	89720649	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0000911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	39	60	0	ENST00000371953.3:c.802-2A>T		p.X268_splice	ENST00000371953	NM_000314.4	268						NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212293172	212293172	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	87	310	0	ENST00000342788.4:c.2680T>A	p.Tyr894Asn	p.Y894N	ENST00000342788	NM_005235.2	894	Tac/Aac					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000911-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	235	179	0	ENST00000257430.4:c.4037C>G	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000899-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	160	428	1	ENST00000269305.4:c.833C>G	p.Pro278Arg	p.P278R	ENST00000269305	NM_001126112.2	278	cCt/cGt					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61149204	61149204	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000899-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	23	282	0	ENST00000295025.8:c.1394A>G	p.Asn465Ser	p.N465S	ENST00000295025	NM_002908.2	465	aAt/aGt					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86669978	86669978	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0000899-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	124	212	0	ENST00000274376.6:c.1777-2A>T		p.X593_splice	ENST00000274376	NM_002890.2	593						NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66526106	66526106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000899-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	85	166	1	ENST00000358598.2:c.937G>T	p.Val313Phe	p.V313F	ENST00000358598	NM_212471.2	313	Gtt/Ttt					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42795741	42795762	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGGTGGCTCAGCCCAGCTG	CCCGGGTGGCTCAGCCCAGCTG	-			P-0000899-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	34	444	0	ENST00000575354.2:c.2731_2752delCCGGGTGGCTCAGCCCAGCTGC	p.Pro911CysfsTer6	p.P911Cfs*6	ENST00000575354	NM_015125.3	910	ccCCCGGGTGGCTCAGCCCAGCTG/cc					NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913514		P-0001542-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	158	426	0	ENST00000288135.5:c.2466T>A	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaA					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0001909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	174	549	1	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29519818	29519818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	171	428	1	ENST00000389048.3:c.1753G>A	p.Ala585Thr	p.A585T	ENST00000389048	NM_004304.4	585	Gcc/Acc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0001909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	145	378	2	ENST00000257430.4:c.4128T>G	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taG					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64132875	64132875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	650	498	1	ENST00000334205.4:c.1009C>T	p.Arg337Trp	p.R337W	ENST00000334205	NM_003942.2	337	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577497	7577497	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0001909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			125	167	295	0	ENST00000269305.4:c.782+2T>C		p.X261_splice	ENST00000269305	NM_001126112.2	261						NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593473	48593473	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	175	454	1	ENST00000342988.3:c.1224T>A	p.Phe408Leu	p.F408L	ENST00000342988	NM_005359.5	408	ttT/ttA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000278-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			852	28	529	0	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	16	263	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023156	31023156	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	24	255	0	ENST00000375687.4:c.2641A>G	p.Arg881Gly	p.R881G	ENST00000375687	NM_015338.5	881	Aga/Gga					NEWRECORD																																																																									
CD79B	0	MSKCC	GRCh37	17	62007156	62007156	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	13	389	0	ENST00000392795.3:c.526G>T	p.Val176Leu	p.V176L	ENST00000392795	NM_001039933.1	176	Gtg/Ttg					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190708783	190708783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			657	227	491	1	ENST00000441310.2:c.676C>T	p.Gln226Ter	p.Q226*	ENST00000441310	NM_000534.4	226	Cag/Tag					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52438566	52438566	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	602	404	1	ENST00000460680.1:c.1153C>T	p.Arg385Ter	p.R385*	ENST00000460680	NM_004656.3	385	Cga/Tga					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41568668	41568668	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0002092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	99	247	0	ENST00000263253.7:c.4617+1G>A		p.X1539_splice	ENST00000263253	NM_001429.3	1539						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	289	358	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	149	210	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99152641	99152641	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	36	382	0	ENST00000074304.5:c.437A>G	p.Asp146Gly	p.D146G	ENST00000074304	NM_001134224.1	146	gAc/gGc					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47430771	47430771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	99	369	1	ENST00000377045.4:c.1736G>A	p.Arg579Gln	p.R579Q	ENST00000377045	NM_001654.4	579	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577594	7577595	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0001231-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	211	285	0	ENST00000269305.4:c.686_687delGT	p.Cys229TyrfsTer10	p.C229Yfs*10	ENST00000269305	NM_001126112.2	229	tGT/t					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187629978	187629978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001231-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	267	440	0	ENST00000441802.2:c.1004C>T	p.Thr335Ile	p.T335I	ENST00000441802	NM_005245.3	335	aCa/aTa					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741858	17741858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001231-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	119	94	0	ENST00000250003.3:c.529G>A	p.Ala177Thr	p.A177T	ENST00000250003	NM_002478.4	177	Gcc/Acc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180047995	180047995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000955-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			291	139	429	0	ENST00000261937.6:c.2180C>T	p.Ala727Val	p.A727V	ENST00000261937	NM_182925.4	727	gCg/gTg					NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0000955-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			171	319	580	1	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68844246	68844246	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0000955-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			100	150	270	0	ENST00000261769.5:c.832+2T>C		p.X278_splice	ENST00000261769	NM_004360.3	278						NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17950292	17950292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000955-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			327	66	352	0	ENST00000458235.1:c.1435C>A	p.Pro479Thr	p.P479T	ENST00000458235	NM_000215.3	479	Ccc/Acc					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52725470	52725470	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000955-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			407	71	424	0	ENST00000322088.6:c.1637A>T	p.Lys546Met	p.K546M	ENST00000322088	NM_014225.5	546	aAg/aTg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11288735	11288735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	162	411	3	ENST00000361445.4:c.3020C>A	p.Ala1007Asp	p.A1007D	ENST00000361445	NM_004958.3	1007	gCc/gAc					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156849080	156849080	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	228	484	1	ENST00000524377.1:c.1972G>T	p.Val658Leu	p.V658L	ENST00000524377	NM_002529.3	658	Gtg/Ttg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29519777	29519777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	46	383	0	ENST00000389048.3:c.1794G>T	p.Leu598Phe	p.L598F	ENST00000389048	NM_004304.4	598	ttG/ttT					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142176478	142176478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			755	92	409	2	ENST00000350721.4:c.7623G>T	p.Arg2541Ser	p.R2541S	ENST00000350721	NM_001184.3	2541	agG/agT					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430735	181430735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	141	361	5	ENST00000325404.1:c.587C>A	p.Pro196His	p.P196H	ENST00000325404	NM_003106.3	196	cCc/cAc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32168698	32168698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			781	136	457	0	ENST00000375023.3:c.4225C>A	p.Leu1409Ile	p.L1409I	ENST00000375023	NM_004557.3	1409	Ctc/Atc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8404570	8404570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			904	227	523	4	ENST00000356435.5:c.4177G>T	p.Asp1393Tyr	p.D1393Y	ENST00000356435		1393	Gat/Tat					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28882979	28882979	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			883	215	494	2	ENST00000282397.4:c.3720+1G>A		p.X1240_splice	ENST00000282397	NM_002019.4	1240						NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061732	38061732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	48	223	0	ENST00000250448.2:c.257C>T	p.Pro86Leu	p.P86L	ENST00000250448	NM_004496.3	86	cCg/cTg					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78831617	78831617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	83	383	3	ENST00000306801.3:c.1426G>T	p.Val476Leu	p.V476L	ENST00000306801	NM_020761.2	476	Gtg/Ttg					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10291025	10291025	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	71	319	3	ENST00000340748.4:c.445+1G>T		p.X149_splice	ENST00000340748		149						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600344	10600344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			688	125	466	3	ENST00000171111.5:c.1511A>G	p.Asn504Ser	p.N504S	ENST00000171111	NM_203500.1	504	aAc/aGc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17953407	17953407	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	138	411	1	ENST00000458235.1:c.579C>A	p.Cys193Ter	p.C193*	ENST00000458235	NM_000215.3	193	tgC/tgA					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546850	9546850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	60	378	1	ENST00000353224.5:c.1172G>T	p.Ser391Ile	p.S391I	ENST00000353224	NM_177990.2	391	aGt/aTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	155	341	0	ENST00000269305.4:c.731delG	p.Gly244AlafsTer3	p.G244Afs*3	ENST00000269305	NM_001126112.2	244	gGc/gc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	102	352	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	115	345	1	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7573996	7573996	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	40	514	0	ENST00000269305.4:c.1031T>G	p.Leu344Arg	p.L344R	ENST00000269305	NM_001126112.2	344	cTg/cGg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	332	231	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118392871	118392871	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	171	265	0	ENST00000534358.1:c.11903G>T	p.Arg3968Leu	p.R3968L	ENST00000534358	NM_005933.3	3968	cGg/cTg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916152	9916152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			633	138	273	0	ENST00000330684.3:c.2137G>A	p.Val713Ile	p.V713I	ENST00000330684	NM_001134407.1	713	Gta/Ata					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916166	9916166	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	133	268	0	ENST00000330684.3:c.2123T>A	p.Phe708Tyr	p.F708Y	ENST00000330684	NM_001134407.1	708	tTt/tAt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916194	9916194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	131	268	0	ENST00000330684.3:c.2095C>A	p.Pro699Thr	p.P699T	ENST00000330684	NM_001134407.1	699	Ccc/Acc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266134	41266136	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0001452-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			577	48	200	0	ENST00000349496.5:c.133_135delTCT	p.Ser45del	p.S45del	ENST00000349496	NM_001904.3	44	cCTTct/cct					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	154	702	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	83	571	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437912	52437912	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	47	246	0	ENST00000460680.1:c.1251-2A>T		p.X417_splice	ENST00000460680	NM_004656.3	417						NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89390149	89390149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	66	572	0	ENST00000336596.2:c.898G>A	p.Gly300Ser	p.G300S	ENST00000336596	NM_005233.5	300	Ggt/Agt					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185161408	185161408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	50	635	0	ENST00000265026.3:c.835G>A	p.Asp279Asn	p.D279N	ENST00000265026	NM_004721.4	279	Gat/Aat					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56167813	56167813	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	37	543	2	ENST00000399503.3:c.1378G>T	p.Glu460Ter	p.E460*	ENST00000399503	NM_005921.1	460	Gaa/Taa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8499688	8499688	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	125	675	1	ENST00000356435.5:c.2281G>T	p.Gly761Cys	p.G761C	ENST00000356435		761	Ggc/Tgc					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101907047	101907047	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			235	77	455	0	ENST00000374994.4:c.1007C>G	p.Ser336Ter	p.S336*	ENST00000374994	NM_004612.2	336	tCa/tGa					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73346364	73346364	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	56	597	0	ENST00000377767.4:c.1436A>G	p.Asp479Gly	p.D479G	ENST00000377767	NM_014953.3	479	gAc/gGc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31384649	31384649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	43	673	0	ENST00000328111.2:c.1351G>T	p.Glu451Ter	p.E451*	ENST00000328111	NM_006892.3	451	Gag/Tag					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041606	47041606	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	83	741	0	ENST00000329236.7:c.1597G>T	p.Glu533Ter	p.E533*	ENST00000329236	NM_001204466.1	533	Gag/Tag					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47430395	47430395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	105	747	0	ENST00000377045.4:c.1670G>T	p.Arg557Leu	p.R557L	ENST00000377045	NM_001654.4	557	cGg/cTg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938508	76938508	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002921-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	51	761	0	ENST00000373344.5:c.2240G>C	p.Ser747Thr	p.S747T	ENST00000373344	NM_000489.3	747	aGt/aCt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001623-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	138	378	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56168793	56168793	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001623-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	157	357	0	ENST00000399503.3:c.1649del	p.Pro550LeufsTer7	p.P550Lfs*7	ENST00000399503	NM_005921.1	549	atC/at					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56161230	56161230	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001623-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	154	415	0	ENST00000399503.3:c.1099C>T	p.Gln367Ter	p.Q367*	ENST00000399503	NM_005921.1	367	Caa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			144	171	345	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943552	66943552	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			560	196	269	0	ENST00000374690.3:c.2632A>G	p.Thr878Ala	p.T878A	ENST00000374690	NM_000044.3	878	Act/Gct					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442530	52442530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			326	153	347	0	ENST00000460680.1:c.215T>C	p.Ile72Thr	p.I72T	ENST00000460680	NM_004656.3	72	aTt/aCt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857679	9857679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			317	262	341	0	ENST00000330684.3:c.3722G>A	p.Arg1241Gln	p.R1241Q	ENST00000330684	NM_001134407.1	1241	cGg/cAg					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23540230	23540235	+	inframe_deletion	In_Frame_Del	DEL	GGCTCC	GGCTCC	-			P-0003597-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			61	34	138	0	ENST00000380871.4:c.168_173del	p.Pro62_Glu63del	p.P62_E63del	ENST00000380871	NM_006167.3	56	ccGGAGCCa/cca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001534-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1013	98	510	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	73	216	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	13	181	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0003314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	120	225	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40363178	40363178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	123	239	0	ENST00000397332.2:c.1051G>C	p.Val351Leu	p.V351L	ENST00000397332	NM_001033082.2	351	Gtg/Ctg					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206666423	206666423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	207	202	0	ENST00000367120.3:c.1903G>T	p.Ala635Ser	p.A635S	ENST00000367120	NM_014002.3	635	Gcc/Tcc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66361159	66361159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	83	202	0	ENST00000273854.3:c.1013G>T	p.Cys338Phe	p.C338F	ENST00000273854	NM_004439.5	338	tGt/tTt					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17943451	17943451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	117	242	0	ENST00000458235.1:c.2557G>T	p.Ala853Ser	p.A853S	ENST00000458235	NM_000215.3	853	Gcc/Tcc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44966724	44966724	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	96	280	0	ENST00000377967.4:c.3948G>T	p.Glu1316Asp	p.E1316D	ENST00000377967	NM_021140.2	1316	gaG/gaT					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941669	48941670	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0003314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	75	154	0	ENST00000267163.4:c.982_983del	p.Asn328Ter	p.N328*	ENST00000267163	NM_000321.2	327	AAa/a					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	380	1342	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag					NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	397	1215	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	253	1357	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9781634	9781634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	133	751	0	ENST00000377346.4:c.1944C>G	p.Phe648Leu	p.F648L	ENST00000377346	NM_005026.3	648	ttC/ttG					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36932338	36932338	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	240	1637	0	ENST00000361632.4:c.2131T>C	p.Ser711Pro	p.S711P	ENST00000361632		711	Tcc/Ccc					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241682991	241682991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	138	546	0	ENST00000366560.3:c.32C>G	p.Ser11Trp	p.S11W	ENST00000366560	NM_000143.3	11	tCg/tGg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142226907	142226907	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	132	779	0	ENST00000350721.4:c.4897C>G	p.Leu1633Val	p.L1633V	ENST00000350721	NM_001184.3	1633	Cta/Gta					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187549689	187549689	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	147	666	0	ENST00000441802.2:c.4552G>T	p.Glu1518Ter	p.E1518*	ENST00000441802	NM_005245.3	1518	Gag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176446	112176446	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	124	605	0	ENST00000257430.4:c.5155G>C	p.Glu1719Gln	p.E1719Q	ENST00000257430	NM_000038.5	1719	Gag/Cag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177184	112177184	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	114	698	0	ENST00000257430.4:c.5893C>G	p.His1965Asp	p.H1965D	ENST00000257430	NM_000038.5	1965	Cat/Gat					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528335	157528335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	167	998	0	ENST00000346085.5:c.6060G>C	p.Leu2020Phe	p.L2020F	ENST00000346085	NM_020732.3	2020	ttG/ttC					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81381439	81381439	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	167	846	0	ENST00000222390.5:c.622G>C	p.Glu208Gln	p.E208Q	ENST00000222390	NM_000601.4	208	Gaa/Caa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151874386	151874386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	162	819	0	ENST00000262189.6:c.8152G>C	p.Glu2718Gln	p.E2718Q	ENST00000262189	NM_170606.2	2718	Gaa/Caa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139403413	139403413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	182	1034	0	ENST00000277541.6:c.3080C>T	p.Ser1027Leu	p.S1027L	ENST00000277541	NM_017617.3	1027	tCa/tTa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	68	550	1	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32417852	32417852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	67	799	0	ENST00000332351.3:c.1200G>C	p.Lys400Asn	p.K400N	ENST00000332351	NM_024426.4	400	aaG/aaC					NEWRECORD																																																																									
FGF4	0	MSKCC	GRCh37	11	69588863	69588863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2037	186	983	0	ENST00000168712.1:c.373G>A	p.Val125Met	p.V125M	ENST00000168712	NM_002007.2	125	Gtg/Atg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433246	49433246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	182	976	0	ENST00000301067.7:c.8201G>A	p.Arg2734Gln	p.R2734Q	ENST00000301067	NM_003482.3	2734	cGa/cAa					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102811655	102811655	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	229	1556	0	ENST00000307046.8:c.529G>C	p.Glu177Gln	p.E177Q	ENST00000307046	NM_001111285.1	177	Gag/Cag					NEWRECORD																																																																									
NFKBIA	0	MSKCC	GRCh37	14	35873811	35873811	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	127	698	0	ENST00000216797.5:c.40G>C	p.Glu14Gln	p.E14Q	ENST00000216797	NM_020529.2	14	Gag/Cag					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99460028	99460028	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	175	778	0	ENST00000268035.6:c.2124G>C	p.Glu708Asp	p.E708D	ENST00000268035	NM_000875.3	708	gaG/gaC					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56792541	56792541	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	256	1305	0	ENST00000308159.5:c.271G>C	p.Glu91Gln	p.E91Q	ENST00000308159	NM_014669.4	91	Gag/Cag					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15276185	15276185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	183	890	0	ENST00000263388.2:c.5809G>C	p.Glu1937Gln	p.E1937Q	ENST00000263388	NM_000435.2	1937	Gag/Cag					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48651603	48651603	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	207	1472	1	ENST00000376670.3:c.769C>T	p.Gln257Ter	p.Q257*	ENST00000376670	NM_002049.3	257	Cag/Tag					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061191	38061192	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0004388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	204	461	0	ENST00000250448.2:c.797_798del	p.Phe266Ter	p.F266*	ENST00000250448	NM_004496.3	266	tTC/t					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000404-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			891	189	335	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0000404-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			703	72	227	2	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248357	212248357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000404-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			658	114	273	0	ENST00000342788.4:c.3910C>T	p.Arg1304Trp	p.R1304W	ENST00000342788	NM_005235.2	1304	Cgg/Tgg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178928068	178928068	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000404-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			737	83	267	0	ENST00000263967.3:c.1346C>G	p.Pro449Arg	p.P449R	ENST00000263967	NM_006218.2	449	cCt/cGt					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30679733	30679733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000404-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			835	68	416	0	ENST00000376406.3:c.1986G>C	p.Gln662His	p.Q662H	ENST00000376406	NM_014641.2	662	caG/caC					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711885	89711885	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000404-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			758	88	274	0	ENST00000371953.3:c.504delT	p.Ser170ValfsTer13	p.S170Vfs*13	ENST00000371953	NM_000314.4	168	aTt/at					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023212	27023229	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGGGCCCTAGGCCCGC	CGCGGGCCCTAGGCCCGC	A			P-0000404-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	37	170	0	ENST00000324856.7:c.318_335delCGCGGGCCCTAGGCCCGCinsA	p.Asn106LysfsTer5	p.N106Kfs*5	ENST00000324856	NM_006015.4	106	aaCGCGGGCCCTAGGCCCGCc/aaAc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11292540	11292540	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	40	359	0	ENST00000361445.4:c.2467A>T	p.Ile823Phe	p.I823F	ENST00000361445	NM_004958.3	823	Atc/Ttc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023303	27023303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	15	84	0	ENST00000324856.7:c.409C>T	p.His137Tyr	p.H137Y	ENST00000324856	NM_006015.4	137	Cac/Tac					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49940133	49940133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	57	577	0	ENST00000296474.3:c.910C>A	p.Pro304Thr	p.P304T	ENST00000296474	NM_002447.2	304	Cca/Aca					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	19	98	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	179	296	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	166	466	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099283	157099283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	42	157	0	ENST00000346085.5:c.220G>A	p.Glu74Lys	p.E74K	ENST00000346085	NM_020732.3	74	Gaa/Aaa					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128752738	128752738	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	50	252	0	ENST00000377970.2:c.899G>A	p.Gly300Glu	p.G300E	ENST00000377970	NM_002467.4	300	gGa/gAa					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5090778	5090778	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	48	321	0	ENST00000381652.3:c.2926G>A	p.Asp976Asn	p.D976N	ENST00000381652	NM_004972.3	976	Gat/Aat					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77103515	77103515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	34	340	0	ENST00000356341.3:c.51G>A	p.Met17Ile	p.M17I	ENST00000356341	NM_002576.4	17	atG/atA					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95590677	95590677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	76	557	1	ENST00000343455.3:c.1232C>T	p.Ser411Leu	p.S411L	ENST00000343455	NM_177438.2	411	tCa/tTa					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72821625	72821625	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201772357		P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	11	53	0	ENST00000268489.5:c.10550G>A	p.Gly3517Asp	p.G3517D	ENST00000268489	NM_006885.3	3517	gGc/gAc					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89357577	89357577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	39	529	0	ENST00000301030.4:c.241G>A	p.Glu81Lys	p.E81K	ENST00000301030	NM_001256183.1	81	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	30	236	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58677936	58677936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	41	277	0	ENST00000305921.3:c.161C>T	p.Ser54Leu	p.S54L	ENST00000305921	NM_003620.3	54	tCg/tTg					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15376413	15376413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	66	602	0	ENST00000263377.2:c.601C>G	p.Gln201Glu	p.Q201E	ENST00000263377	NM_058243.2	201	Caa/Gaa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41420076	41420076	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004264-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	26	232	0	ENST00000373198.4:c.245G>C	p.Arg82Thr	p.R82T	ENST00000373198	NM_133170.3	82	aGa/aCa					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098807	178098807	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			896	66	437	0	ENST00000397062.3:c.238A>G	p.Thr80Ala	p.T80A	ENST00000397062	NM_006164.4	80	Aca/Gca					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227659830	227659830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	25	124	0	ENST00000305123.5:c.3625C>G	p.Gln1209Glu	p.Q1209E	ENST00000305123	NM_005544.2	1209	Caa/Gaa					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30679234	30679234	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			754	104	342	0	ENST00000376406.3:c.2176C>G	p.Pro726Ala	p.P726A	ENST00000376406	NM_014641.2	726	Cca/Gca					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30679794	30679794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	51	266	0	ENST00000376406.3:c.1925G>A	p.Arg642Lys	p.R642K	ENST00000376406	NM_014641.2	642	aGa/aAa					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30679855	30679855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	37	247	0	ENST00000376406.3:c.1864G>A	p.Glu622Lys	p.E622K	ENST00000376406	NM_014641.2	622	Gag/Aag					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30679975	30679975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	34	229	0	ENST00000376406.3:c.1744G>A	p.Glu582Lys	p.E582K	ENST00000376406	NM_014641.2	582	Gag/Aag					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32164129	32164129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	77	234	0	ENST00000375023.3:c.5270G>C	p.Gly1757Ala	p.G1757A	ENST00000375023	NM_004557.3	1757	gGa/gCa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32166482	32166482	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			769	91	327	0	ENST00000375023.3:c.4561G>C	p.Asp1521His	p.D1521H	ENST00000375023	NM_004557.3	1521	Gat/Cat					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151853293	151853293	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	66	185	0	ENST00000262189.6:c.11809G>T	p.Glu3937Ter	p.E3937*	ENST00000262189	NM_170606.2	3937	Gaa/Taa					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	442781	442781	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	82	214	0	ENST00000399788.2:c.1525C>G	p.His509Asp	p.H509D	ENST00000399788	NM_001042603.1	509	Cat/Gat					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245928	46245928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	65	183	0	ENST00000334344.6:c.4022C>T	p.Ser1341Leu	p.S1341L	ENST00000334344	NM_152641.2	1341	tCa/tTa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246375	46246375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	153	282	0	ENST00000334344.6:c.4469G>C	p.Gly1490Ala	p.G1490A	ENST00000334344	NM_152641.2	1490	gGa/gCa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49426688	49426688	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	64	118	0	ENST00000301067.7:c.11800C>T	p.Gln3934Ter	p.Q3934*	ENST00000301067	NM_003482.3	3934	Cag/Tag					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17117061	17117061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	104	291	0	ENST00000285071.4:c.1648C>A	p.Leu550Met	p.L550M	ENST00000285071	NM_144997.5	550	Ctg/Atg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561018	9561018	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	140	228	0	ENST00000353224.5:c.764G>C	p.Ser255Thr	p.S255T	ENST00000353224	NM_177990.2	255	aGt/aCt					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81609728	81609729	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0001478-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	86	312	0	ENST00000298171.2:c.1326_1327delinsAA	p.Ser442_His443delinsArgAsn	p.S442_H443delinsRN	ENST00000298171	NM_000369.2	442	agCCac/agAAac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001799-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	293	223	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	601	614	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs876658153		P-0000188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	224	419	0	ENST00000371953.3:c.209+1G>T		p.X70_splice	ENST00000371953	NM_000314.4	70						NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	407	446	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52438565	52438565	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	461	381	0	ENST00000460680.1:c.1154delG	p.Arg385GlnfsTer45	p.R385Qfs*45	ENST00000460680	NM_004656.3	385	cGa/ca					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94192629	94192630	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0000188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			950	221	578	0	ENST00000323929.3:c.1444_1445delCA	p.Gln482AlafsTer4	p.Q482Afs*4	ENST00000323929	NM_005591.3	482	CAg/g					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	182	573	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137522064	137522064	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	52	258	0	ENST00000367739.4:c.815A>C	p.Lys272Thr	p.K272T	ENST00000367739	NM_000416.2	272	aAa/aCa					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226567686	226567686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	52	474	0	ENST00000366794.5:c.1480G>A	p.Ala494Thr	p.A494T	ENST00000366794	NM_001618.3	494	Gcc/Acc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32168613	32168613	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	51	377	0	ENST00000375023.3:c.4310G>A	p.Gly1437Glu	p.G1437E	ENST00000375023	NM_004557.3	1437	gGg/gAg					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15365053	15365053	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	72	387	0	ENST00000263377.2:c.2068G>T	p.Ala690Ser	p.A690S	ENST00000263377	NM_058243.2	690	Gcc/Tcc					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410274	63410274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	52	545	0	ENST00000330258.3:c.2893C>T	p.Pro965Ser	p.P965S	ENST00000330258	NM_152424.3	965	Cct/Tct					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412400	63412400	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	75	739	0	ENST00000330258.3:c.767A>G	p.Lys256Arg	p.K256R	ENST00000330258	NM_152424.3	256	aAa/aGa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187517963	187517963	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	97	301	0	ENST00000441802.2:c.12731A>C	p.Asp4244Ala	p.D4244A	ENST00000441802	NM_005245.3	4244	gAc/gCc					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81334837	81334838	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	184	305	1	ENST00000222390.5:c.1878_1879delinsAT	p.Asp626_Gly627delinsGluCys	p.D626_G627delinsEC	ENST00000222390	NM_000601.4	626	gaTGgc/gaATgc					NEWRECORD																																																																									
CDK6	0	MSKCC	GRCh37	7	92354983	92354983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	165	297	0	ENST00000265734.4:c.494G>T	p.Gly165Val	p.G165V	ENST00000265734	NM_001259.6	165	gGc/gTc					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102207675	102207675	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	382	500	0	ENST00000263464.3:c.1657G>T	p.Glu553Ter	p.E553*	ENST00000263464	NM_001165.4	553	Gaa/Taa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108154953	108154953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	103	142	0	ENST00000278616.4:c.3747-1G>T		p.X1249_splice	ENST00000278616	NM_000051.3	1249						NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115109870	115109871	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	75	107	0	ENST00000257566.3:c.2007_2008delinsAA	p.Leu670Met	p.L670M	ENST00000257566	NM_016569.3	669	ccCCtg/ccAAtg					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112187	115112187	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	121	258	0	ENST00000257566.3:c.1553T>G	p.Leu518Arg	p.L518R	ENST00000257566	NM_016569.3	518	cTc/cGc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133225535	133225535	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	99	285	0	ENST00000320574.5:c.4129G>T	p.Glu1377Ter	p.E1377*	ENST00000320574	NM_006231.2	1377	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	363	436	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63545761	63545761	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	161	315	2	ENST00000307078.5:c.833A>T	p.Asp278Val	p.D278V	ENST00000307078	NM_004655.3	278	gAt/gTt					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24145486	24145486	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	160	289	0	ENST00000263121.7:c.505G>C	p.Asp169His	p.D169H	ENST00000263121	NM_003073.3	169	Gat/Cat					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720726	89720726	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			25	44	41	0	ENST00000371953.3:c.878delG	p.Gly293GlufsTer14	p.G293Efs*14	ENST00000371953	NM_000314.4	293	Gga/ga					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180056714	180056714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			706	41	492	0	ENST00000261937.6:c.798G>T	p.Trp266Cys	p.W266C	ENST00000261937	NM_182925.4	266	tgG/tgT					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157469938	157469938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	117	399	0	ENST00000346085.5:c.2732G>A	p.Gly911Glu	p.G911E	ENST00000346085	NM_020732.3	911	gGa/gAa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			36	271	885	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66197766	66197766	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	135	955	0	ENST00000273854.3:c.2933A>C	p.Lys978Thr	p.K978T	ENST00000273854	NM_004439.5	978	aAg/aCg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175000	112175000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			31	150	371	0	ENST00000257430.4:c.3709C>T	p.Gln1237Ter	p.Q1237*	ENST00000257430	NM_000038.5	1237	Cag/Tag					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32170088	32170088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	132	670	1	ENST00000375023.3:c.3520G>A	p.Gly1174Arg	p.G1174R	ENST00000375023	NM_004557.3	1174	Gga/Aga					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117681101	117681101	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	147	1003	0	ENST00000368508.3:c.3519A>C	p.Gln1173His	p.Q1173H	ENST00000368508	NM_002944.2	1173	caA/caC					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152163751	152163751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	154	564	0	ENST00000206249.3:c.472C>T	p.Arg158Cys	p.R158C	ENST00000206249	NM_000125.3	158	Cgc/Tgc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8501027	8501027	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			238	110	583	0	ENST00000356435.5:c.1855A>T	p.Thr619Ser	p.T619S	ENST00000356435		619	Acc/Tcc					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101908809	101908809	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	221	986	0	ENST00000374994.4:c.1173A>C	p.Lys391Asn	p.K391N	ENST00000374994	NM_004612.2	391	aaA/aaC					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125523678	125523678	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	22	877	0	ENST00000428830.2:c.1271T>C	p.Leu424Pro	p.L424P	ENST00000428830	NM_001114121.2	424	cTc/cCc					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46231140	46231140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			343	64	791	0	ENST00000334344.6:c.1060C>A	p.Leu354Met	p.L354M	ENST00000334344	NM_152641.2	354	Ctg/Atg					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			31	230	581	0	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37627904	37627904	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	103	888	0	ENST00000447079.4:c.1819G>A	p.Val607Ile	p.V607I	ENST00000447079	NM_015083.1	607	Gtt/Att					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37673794	37673794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	93	508	0	ENST00000447079.4:c.2948G>A	p.Arg983Gln	p.R983Q	ENST00000447079	NM_015083.1	983	cGa/cAa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11145660	11145660	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	59	536	0	ENST00000344626.4:c.4022A>G	p.Asp1341Gly	p.D1341G	ENST00000344626	NM_003072.3	1341	gAc/gGc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0000502-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	121	562	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000502-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	94	137	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0000502-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	32	251	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108137949	108137949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000502-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			612	43	410	0	ENST00000278616.4:c.2518G>A	p.Asp840Asn	p.D840N	ENST00000278616	NM_000051.3	840	Gat/Aat					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11144080	11144080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000502-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	82	430	0	ENST00000344626.4:c.3661A>G	p.Lys1221Glu	p.K1221E	ENST00000344626	NM_003072.3	1221	Aag/Gag					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039422	47039422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000502-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	97	271	0	ENST00000329236.7:c.814C>T	p.Gln272Ter	p.Q272*	ENST00000329236	NM_001204466.1	272	Cag/Tag					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220444	1220444	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000502-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	80	608	0	ENST00000326873.7:c.540delG	p.Asn181ThrfsTer106	p.N181Tfs*106	ENST00000326873	NM_000455.4	179	ccG/cc					NEWRECORD																																																																									
KDM6A	7403	MSKCC	GRCh37	X	44918596	44918597	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0000502-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	191	371	0	ENST00000377967.4:c.1083_1084del	p.Tyr362Ter	p.Y362*	ENST00000377967	NM_021140.2	360	aCT/a					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151849844	151849844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000175-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			282	152	418	0	ENST00000262189.6:c.12472G>A	p.Val4158Met	p.V4158M	ENST00000262189	NM_170606.2	4158	Gtg/Atg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000175-T03-IM3									Unknown	SOMATIC				MSK-IMPACT			203	84	421	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	29	478	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0004335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	20	291	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	38	540	0	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	624	408	1	ENST00000342988.3:c.1610A>T	p.Asp537Val	p.D537V	ENST00000342988	NM_005359.5	537	gAc/gTc					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287502	33287502	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	614	367	0	ENST00000374542.5:c.1595T>A	p.Leu532Ter	p.L532*	ENST00000374542	NM_001141970.1	532	tTa/tAa					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575526	64575526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	609	367	0	ENST00000337652.1:c.506C>T	p.Ala169Val	p.A169V	ENST00000337652	NM_130803.2	169	gCc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0001086-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	143	345	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55981462	55981462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001086-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			965	56	409	0	ENST00000263923.4:c.475G>A	p.Val159Met	p.V159M	ENST00000263923	NM_002253.2	159	Gtg/Atg					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	231001	231001	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143484394		P-0001086-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			913	50	456	1	ENST00000264932.6:c.781C>T	p.Arg261Cys	p.R261C	ENST00000264932	NM_004168.2	261	Cgc/Tgc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174798	112174798	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001086-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			658	38	315	0	ENST00000257430.4:c.3507G>C	p.Glu1169Asp	p.E1169D	ENST00000257430	NM_000038.5	1169	gaG/gaC					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131939009	131939009	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001086-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	27	193	0	ENST00000265335.6:c.2225T>C	p.Leu742Ser	p.L742S	ENST00000265335		742	tTg/tCg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40980811	40980811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001086-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	31	439	0	ENST00000373198.4:c.1675G>A	p.Gly559Arg	p.G559R	ENST00000373198	NM_133170.3	559	Ggg/Agg					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65305399	65305400	+	missense_variant	Missense_Mutation	DNP	AG	AG	GA			P-0001852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			113	76	262	0	ENST00000342505.4:c.2728_2729delinsTC	p.Leu910Ser	p.L910S	ENST00000342505	NM_002227.2	910	CTg/TCg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175180	112175199	+	frameshift_variant	Frame_Shift_Del	DEL	GATTCTGCTAATACCCTGCA	GATTCTGCTAATACCCTGCA	C			P-0001852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			56	12	124	0	ENST00000257430.4:c.3889_3908delinsC	p.Asp1297GlnfsTer2	p.D1297Qfs*2	ENST00000257430	NM_000038.5	1297	GATTCTGCTAATACCCTGCAa/Ca					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	129	165	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	129	165	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	129	165	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78429779	78429779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	126	257	0	ENST00000370768.2:c.1009G>A	p.Glu337Lys	p.E337K	ENST00000370768	NM_003902.3	337	Gaa/Aaa					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206658609	206658609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	142	216	0	ENST00000367120.3:c.1582G>A	p.Val528Met	p.V528M	ENST00000367120	NM_014002.3	528	Gtg/Atg					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243800946	243800946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	45	381	0	ENST00000263826.5:c.528G>A	p.Met176Ile	p.M176I	ENST00000263826	NM_005465.4	176	atG/atA					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134911585	134911585	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	60	202	0	ENST00000398015.3:c.2050G>C	p.Glu684Gln	p.E684Q	ENST00000398015	NM_004441.4	684	Gag/Cag					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142281863	142281863	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	78	215	0	ENST00000350721.4:c.381C>G	p.Ile127Met	p.I127M	ENST00000350721	NM_001184.3	127	atC/atG					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189456477	189456477	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	36	253	0	ENST00000264731.3:c.238C>A	p.Pro80Thr	p.P80T	ENST00000264731	NM_003722.4	80	Cca/Aca					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176684141	176684141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	84	279	0	ENST00000439151.2:c.4955C>T	p.Ser1652Phe	p.S1652F	ENST00000439151	NM_022455.4	1652	tCt/tTt					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30673161	30673161	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	168	250	0	ENST00000376406.3:c.3799C>T	p.Gln1267Ter	p.Q1267*	ENST00000376406	NM_014641.2	1267	Cag/Tag					NEWRECORD																																																																									
PIM1	0	MSKCC	GRCh37	6	37138642	37138642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	30	178	0	ENST00000373509.5:c.176C>G	p.Ser59Cys	p.S59C	ENST00000373509	NM_002648.3	59	tCc/tGc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108199839	108199839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	175	251	0	ENST00000278616.4:c.7181C>T	p.Ser2394Leu	p.S2394L	ENST00000278616	NM_000051.3	2394	tCa/tTa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28908251	28908251	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	84	325	0	ENST00000282397.4:c.2504G>C	p.Arg835Thr	p.R835T	ENST00000282397	NM_002019.4	835	aGa/aCa					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993420	72993420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	116	474	1	ENST00000268489.5:c.625G>A	p.Glu209Lys	p.E209K	ENST00000268489	NM_006885.3	209	Gag/Aag					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7216755	7216755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	41	366	0	ENST00000380728.2:c.668C>G	p.Ser223Cys	p.S223C	ENST00000380728		223	tCt/tGt					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41243589	41243589	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	25	391	0	ENST00000357654.3:c.3959C>G	p.Ser1320Cys	p.S1320C	ENST00000357654	NM_007294.3	1320	tCt/tGt					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9543605	9543605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	218	356	0	ENST00000353224.5:c.1549G>A	p.Asp517Asn	p.D517N	ENST00000353224	NM_177990.2	517	Gat/Aat					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123229229	123229229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	174	170	0	ENST00000218089.9:c.3713C>G	p.Ser1238Ter	p.S1238*	ENST00000218089	NM_001042749.1	1238	tCa/tGa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433971	49434101	+	frameshift_variant	Frame_Shift_Del	DEL	CAAATGCACCCGTCCCAGGGGACCGGACAAAATTGGGGGGCTGCCCACTTGGGACCTTGGCATGGAGCTCACCTGCTGGCCCCGCGGGCAGGGCTGCTGGGAACCCCCCAGCCCCCAGCGAAGTGTGGGCT	CAAATGCACCCGTCCCAGGGGACCGGACAAAATTGGGGGGCTGCCCACTTGGGACCTTGGCATGGAGCTCACCTGCTGGCCCCGCGGGCAGGGCTGCTGGGAACCCCCCAGCCCCCAGCGAAGTGTGGGCT	-			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	38	166	0	ENST00000301067.7:c.7452_7582del	p.Ala2485GlyfsTer126	p.A2485Gfs*126	ENST00000301067	NM_003482.3	2484	ctAGCCCACACTTCGCTGGGGGCTGGGGGGTTCCCAGCAGCCCTGCCCGCGGGGCCAGCAGGTGAGCTCCATGCCAAGGTCCCAAGTGGGCAGCCCCCCAATTTTGTCCGGTCCCCTGGGACGGGTGCATTTGtg/cttg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108224531	108224546	+	frameshift_variant	Frame_Shift_Del	DEL	GAGACAGTTCCTTTTA	GAGACAGTTCCTTTTA	-			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	37	245	0	ENST00000278616.4:c.8712_8727del	p.Glu2904AspfsTer29	p.E2904Dfs*29	ENST00000278616	NM_000051.3	2904	GAGACAGTTCCTTTTAga/ga					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042326	42042326	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	85	637	0	ENST00000219905.7:c.6522del	p.Trp2174Ter	p.W2174*	ENST00000219905	NM_001164273.1	2174	tGg/tg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49440519	49440520	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CA	CA	-			P-0004085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	123	254	0	ENST00000301067.7:c.4290_4291del	p.Cys1430Ter	p.C1430*	ENST00000301067	NM_003482.3	1430	tgTGag/tgag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0004191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	67	229	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187521120	187521120	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	53	225	1	ENST00000441802.2:c.12035C>T	p.Thr4012Met	p.T4012M	ENST00000441802	NM_005245.3	4012	aCg/aTg					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38950417	38950417	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	48	344	0	ENST00000357387.3:c.3533T>C	p.Ile1178Thr	p.I1178T	ENST00000357387	NM_152756.3	1178	aTt/aCt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8497267	8497267	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0004191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	36	212	0	ENST00000356435.5:c.2324G>A	p.Trp775Ter	p.W775*	ENST00000356435		775	tGg/tAg					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23635345	23635345	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	80	339	0	ENST00000261584.4:c.2819A>G	p.Glu940Gly	p.E940G	ENST00000261584	NM_024675.3	940	gAa/gGa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68862208	68862208	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	32	152	0	ENST00000261769.5:c.2295+1G>A		p.X765_splice	ENST00000261769	NM_004360.3	765						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			62	128	753	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	31	721	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41277275	41277275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	67	701	0	ENST00000349496.5:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000349496	NM_001904.3	582	Cgg/Tgg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142274722	142274722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			147	33	517	1	ENST00000350721.4:c.2338C>A	p.Leu780Ile	p.L780I	ENST00000350721	NM_001184.3	780	Ctt/Att					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35874636	35874636	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	26	767	2	ENST00000303115.3:c.792G>T	p.Trp264Cys	p.W264C	ENST00000303115	NM_002185.3	264	tgG/tgT					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	47	421	0	ENST00000371953.3:c.275A>G	p.Asp92Gly	p.D92G	ENST00000371953	NM_000314.4	92	gAc/gGc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	63	702	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	23	441	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	105	1136	0	ENST00000269305.4:c.636delT	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11270891	11270891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	42	820	0	ENST00000361445.4:c.3634C>A	p.Leu1212Ile	p.L1212I	ENST00000361445	NM_004958.3	1212	Ctc/Atc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142281475	142281475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	71	933	0	ENST00000350721.4:c.769C>G	p.Gln257Glu	p.Q257E	ENST00000350721	NM_001184.3	257	Cag/Gag					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178919271	178919271	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	83	680	1	ENST00000263967.3:c.756A>T	p.Leu252Phe	p.L252F	ENST00000263967	NM_006218.2	252	ttA/ttT					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741784	145741784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	124	913	1	ENST00000428558.2:c.719C>T	p.Ser240Leu	p.S240L	ENST00000428558	NM_004260.3	240	tCa/tTa					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760320	133760321	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	152	775	0	ENST00000318560.5:c.2645_2646del	p.Ser882Ter	p.S882*	ENST00000318560	NM_005157.4	881	tcCTct/tcct					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11105628	11105630	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	81	696	0	ENST00000344626.4:c.1548_1550del	p.Lys517del	p.K517del	ENST00000344626	NM_003072.3	515	cAGAag/cag					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227660348	227660350	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0004433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	35	396	0	ENST00000305123.5:c.3105_3107del	p.Ser1038del	p.S1038del	ENST00000305123	NM_005544.2	1035	tcCTCa/tca					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0001125-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			25	112	186	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0001125-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			25	112	186	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001657-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	38	351	0	ENST00000369535.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caT					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	34	122	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	62	199	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			690	293	473	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138374292	138374292	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			777	341	614	0	ENST00000289153.2:c.3152A>G	p.Glu1051Gly	p.E1051G	ENST00000289153	NM_006219.2	1051	gAa/gGa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434312	49434312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000189-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	195	596	0	ENST00000301067.7:c.7241G>A	p.Ser2414Asn	p.S2414N	ENST00000301067	NM_003482.3	2414	aGt/aAt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89499342	89499342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	320	335	0	ENST00000336596.2:c.2512G>A	p.Asp838Asn	p.D838N	ENST00000336596	NM_005233.5	838	Gat/Aat					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134968233	134968233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1021	175	526	0	ENST00000398015.3:c.2746G>C	p.Val916Leu	p.V916L	ENST00000398015	NM_004441.4	916	Gtg/Ctg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467863	66467863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	425	477	0	ENST00000273854.3:c.406G>T	p.Asp136Tyr	p.D136Y	ENST00000273854	NM_004439.5	136	Gac/Tac					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106156669	106156669	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	364	340	0	ENST00000380013.4:c.1570G>T	p.Glu524Ter	p.E524*	ENST00000380013	NM_001127208.2	524	Gag/Tag					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630936	187630936	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	347	344	0	ENST00000441802.2:c.46C>T	p.Gln16Ter	p.Q16*	ENST00000441802	NM_005245.3	16	Caa/Taa					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294042	1294042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	303	532	0	ENST00000310581.5:c.959C>T	p.Pro320Leu	p.P320L	ENST00000310581	NM_198253.2	320	cCt/cTt					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150004891	150004891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	353	432	0	ENST00000253339.5:c.1334C>T	p.Pro445Leu	p.P445L	ENST00000253339		445	cCg/cTg					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759418	133759418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	927	708	0	ENST00000318560.5:c.1741G>C	p.Glu581Gln	p.E581Q	ENST00000318560	NM_005157.4	581	Gag/Cag					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70432668	70432668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	195	400	0	ENST00000373644.4:c.4690C>G	p.Gln1564Glu	p.Q1564E	ENST00000373644	NM_030625.2	1564	Caa/Gaa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46285670	46285670	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	225	447	0	ENST00000334344.6:c.5030G>T	p.Arg1677Leu	p.R1677L	ENST00000334344	NM_152641.2	1677	cGa/cTa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435051	49435051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	75	173	0	ENST00000301067.7:c.6502C>T	p.Pro2168Ser	p.P2168S	ENST00000301067	NM_003482.3	2168	Ccc/Tcc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9923374	9923374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	357	456	0	ENST00000330684.3:c.1913C>A	p.Ala638Asp	p.A638D	ENST00000330684	NM_001134407.1	638	gCt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	241	374	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2216464	2216464	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	243	344	0	ENST00000398665.3:c.2108A>T	p.His703Leu	p.H703L	ENST00000398665	NM_032482.2	703	cAc/cTc					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39763596	39763596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	351	390	0	ENST00000288319.7:c.856C>G	p.Gln286Glu	p.Q286E	ENST00000288319	NM_182918.3	286	Cag/Gag					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70348205	70348205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			87	232	296	0	ENST00000374080.3:c.3269C>T	p.Ala1090Val	p.A1090V	ENST00000374080		1090	gCa/gTa					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55953855	55953856	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0000315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	168	416	0	ENST00000263923.4:c.3580_3581delCT	p.Leu1194AlafsTer15	p.L1194Afs*15	ENST00000263923	NM_002253.2	1194	CTg/g					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121416626	121416626	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			48	22	485	0	ENST00000257555.6:c.55T>C	p.Ser19Pro	p.S19P	ENST00000257555		19	Tca/Cca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577135	7577135	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			59	62	534	0	ENST00000269305.4:c.803A>T	p.Asn268Ile	p.N268I	ENST00000269305	NM_001126112.2	268	aAc/aTc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68855934	68855934	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			39	45	531	0	ENST00000261769.5:c.1743del	p.Leu582CysfsTer2	p.L582Cfs*2	ENST00000261769	NM_004360.3	581	cTt/ct					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041610	47041610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	336	1775	0	ENST00000329236.7:c.1601G>T	p.Arg534Met	p.R534M	ENST00000329236	NM_001204466.1	534	aGg/aTg					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412878	63412878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	255	1805	2	ENST00000330258.3:c.289G>A	p.Asp97Asn	p.D97N	ENST00000330258	NM_152424.3	97	Gat/Aat					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937798	76937798	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	130	2023	2	ENST00000373344.5:c.2950C>T	p.Gln984Ter	p.Q984*	ENST00000373344	NM_000489.3	984	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002904-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	511	391	0	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023805	27023805	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002904-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	308	179	0	ENST00000324856.7:c.911C>A	p.Ser304Ter	p.S304*	ENST00000324856	NM_006015.4	304	tCg/tAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	255	349	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190719635	190719635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			543	78	278	0	ENST00000441310.2:c.1637G>A	p.Cys546Tyr	p.C546Y	ENST00000441310	NM_000534.4	546	tGt/tAt					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209101832	209101832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	161	549	0	ENST00000345146.2:c.1216A>G	p.Lys406Glu	p.K406E	ENST00000345146	NM_005896.2	406	Aag/Gag					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142215987	142215987	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			642	166	352	0	ENST00000350721.4:c.5606A>G	p.Gln1869Arg	p.Q1869R	ENST00000350721	NM_001184.3	1869	cAg/cGg					NEWRECORD																																																																									
IDH2	0	MSKCC	GRCh37	15	90634806	90634806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			885	441	391	0	ENST00000330062.3:c.186C>G	p.Ile62Met	p.I62M	ENST00000330062	NM_002168.2	62	atC/atG					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48878160	48878161	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0001802-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	91	126	0	ENST00000267163.4:c.112_113delinsTT	p.Gly38Phe	p.G38F	ENST00000267163	NM_000321.2	38	GGc/TTc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	360	435	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187557310	187557310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	193	470	0	ENST00000441802.2:c.4052C>A	p.Pro1351Gln	p.P1351Q	ENST00000441802	NM_005245.3	1351	cCg/cAg					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370951	55370951	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	161	353	1	ENST00000297316.4:c.253C>G	p.Arg85Gly	p.R85G	ENST00000297316	NM_022454.3	85	Cgg/Ggg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	146	480	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0004211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	26	473	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65560460	65560460	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	40	405	0	ENST00000358664.4:c.137T>G	p.Leu46Trp	p.L46W	ENST00000358664	NM_002382.4	46	tTg/tGg					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65543360	65543386	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCGCCTTCTCCAGTGCACGGACTAAA	CTCGCCTTCTCCAGTGCACGGACTAAA	-			P-0004211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	155	550	0	ENST00000358664.4:c.296-5_317del		p.X99_splice	ENST00000358664	NM_002382.4	99						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	200	311	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0004681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	68	672	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187442854	187442854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	8	263	0	ENST00000232014.4:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000232014	NM_001130845.1	618	Cgt/Tgt					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157834	106157834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	243	455	2	ENST00000380013.4:c.2735C>T	p.Ala912Val	p.A912V	ENST00000380013	NM_001127208.2	912	gCg/gTg					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180040082	180040082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	29	539	0	ENST00000261937.6:c.3360C>G	p.Ile1120Met	p.I1120M	ENST00000261937	NM_182925.4	1120	atC/atG					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27777876	27777876	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	62	787	0	ENST00000369163.2:c.25C>G	p.Arg9Gly	p.R9G	ENST00000369163	NM_003536.2	9	Cgc/Ggc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2951817	2951817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	140	513	0	ENST00000396946.4:c.3133G>T	p.Val1045Leu	p.V1045L	ENST00000396946	NM_032415.4	1045	Gtg/Ttg					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104352399	104352399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	48	582	0	ENST00000369902.3:c.515C>T	p.Ser172Leu	p.S172L	ENST00000369902	NM_016169.3	172	tCa/tTa					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110437730	110437730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	279	411	0	ENST00000375856.3:c.671G>A	p.Arg224His	p.R224H	ENST00000375856	NM_003749.2	224	cGc/cAc					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15841322	15841322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	33	560	2	ENST00000307771.7:c.1406C>T	p.Ser469Leu	p.S469L	ENST00000307771	NM_005089.3	469	tCg/tTg					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187447588	187447588	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	69	317	0	ENST00000232014.4:c.605del	p.Pro202LeufsTer122	p.P202Lfs*122	ENST00000232014	NM_001130845.1	202	cCt/ct					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643798	52643808	+	frameshift_variant	Frame_Shift_Del	DEL	TAGTCAGATAG	TAGTCAGATAG	-			P-0004681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	51	462	0	ENST00000394830.3:c.2088_2098del	p.Tyr697Ter	p.Y697*	ENST00000394830	NM_018313.4	696	taCTATCTGACTAtt/tatt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	96	304	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41246548	41246548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	67	424	0	ENST00000357654.3:c.1000C>T	p.Pro334Ser	p.P334S	ENST00000357654	NM_007294.3	334	Ccc/Tcc					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	64	321	1	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	107	299	1	ENST00000344626.4:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000344626	NM_003072.3	1192	cGc/cAc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941715	48941716	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0003381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	101	269	0	ENST00000267163.4:c.1027_1028del	p.Leu343SerfsTer3	p.L343Sfs*3	ENST00000267163	NM_000321.2	342	aCT/a					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000234-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	54	88	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0000234-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	148	259	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000234-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	58	207	0	ENST00000269305.4:c.715A>C	p.Asn239His	p.N239H	ENST00000269305	NM_001126112.2	239	Aac/Cac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577545	7577550	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCGC	TGCCGC	GGCGG			P-0000234-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	57	215	0	ENST00000269305.4:c.731_736delGCGGCAinsCCGCC	p.Gly244AlafsTer3	p.G244Afs*3	ENST00000269305	NM_001126112.2	244	gGCGGCAtg/gCCGCCtg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	166	354	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29105993	29105993	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0003829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	173	427	0	ENST00000328354.6:c.846+1G>A		p.X282_splice	ENST00000328354	NM_007194.3	282						NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8389329	8389329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	129	705	0	ENST00000356435.5:c.4289G>A	p.Gly1430Glu	p.G1430E	ENST00000356435		1430	gGa/gAa					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43804252	43804252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	142	610	0	ENST00000372470.3:c.252G>C	p.Met84Ile	p.M84I	ENST00000372470	NM_005373.2	84	atG/atC					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17942559	17942559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	72	356	0	ENST00000458235.1:c.2729T>C	p.Leu910Ser	p.L910S	ENST00000458235	NM_000215.3	910	tTg/tCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	228	473	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128199967	128199967	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	86	238	0	ENST00000341105.2:c.1338C>G	p.Phe446Leu	p.F446L	ENST00000341105	NM_032638.4	446	ttC/ttG					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187549308	187549308	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	114	307	0	ENST00000441802.2:c.4810G>A	p.Gly1604Arg	p.G1604R	ENST00000441802	NM_005245.3	1604	Gga/Aga					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78519437	78519437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	46	197	0	ENST00000306801.3:c.8C>A	p.Ser3Tyr	p.S3Y	ENST00000306801	NM_020761.2	3	tCc/tAc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5208290	5208290	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	238	489	0	ENST00000357368.4:c.5600A>C	p.Lys1867Thr	p.K1867T	ENST00000357368	NM_002850.3	1867	aAg/aCg					NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	149997826	149997826	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	148	309	1	ENST00000253339.5:c.2641del	p.Asp881IlefsTer11	p.D881Ifs*11	ENST00000253339		881	Gat/at					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176085759	176085759	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0004130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	145	343	0	ENST00000367669.3:c.1026+1del		p.X342_splice	ENST00000367669	NM_022457.5	342						NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120526	94120536	+	frameshift_variant	Frame_Shift_Del	DEL	TCCAATCTCTC	TCCAATCTCTC	-			P-0004130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1710	317	612	0	ENST00000369303.4:c.515_525del	p.Arg172ThrfsTer35	p.R172Tfs*35	ENST00000369303	NM_004440.3	172	aGAGAGATTGGA/a					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	93	188	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579580	7579580	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	185	372	0	ENST00000269305.4:c.107delC	p.Pro36ArgfsTer8	p.P36Rfs*8	ENST00000269305	NM_001126112.2	36	cCg/cg					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209108272	209108272	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			851	231	528	0	ENST00000345146.2:c.577G>T	p.Ala193Ser	p.A193S	ENST00000345146	NM_005896.2	193	Gca/Tca					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225360671	225360671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			783	161	495	0	ENST00000264414.4:c.1720G>A	p.Glu574Lys	p.E574K	ENST00000264414	NM_003590.4	574	Gaa/Aaa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89445029	89445029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			831	200	557	0	ENST00000336596.2:c.1349G>A	p.Arg450Lys	p.R450K	ENST00000336596	NM_005233.5	450	aGa/aAa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89445035	89445035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			857	204	549	0	ENST00000336596.2:c.1355G>T	p.Ser452Ile	p.S452I	ENST00000336596	NM_005233.5	452	aGc/aTc					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38963047	38963047	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			849	155	566	0	ENST00000357387.3:c.1497G>T	p.Gln499His	p.Q499H	ENST00000357387	NM_152756.3	499	caG/caT					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57751895	57751895	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	204	616	0	ENST00000274289.3:c.1342A>G	p.Ile448Val	p.I448V	ENST00000274289	NM_006622.3	448	Ata/Gta					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176721436	176721436	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	202	439	1	ENST00000439151.2:c.7067C>T	p.Thr2356Met	p.T2356M	ENST00000439151	NM_022455.4	2356	aCg/aTg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188419	32188419	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	118	302	0	ENST00000375023.3:c.923-1G>T		p.X308_splice	ENST00000375023	NM_004557.3	308						NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370711	55370711	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	63	186	0	ENST00000297316.4:c.13G>A	p.Asp5Asn	p.D5N	ENST00000297316	NM_022454.3	5	Gat/Aat					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333158	70333158	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	333	633	0	ENST00000373644.4:c.1063C>T	p.Gln355Ter	p.Q355*	ENST00000373644	NM_030625.2	355	Caa/Taa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108216494	108216494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			889	121	547	0	ENST00000278616.4:c.8443G>C	p.Glu2815Gln	p.E2815Q	ENST00000278616	NM_000051.3	2815	Gag/Cag					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344997	118344997	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			831	105	377	0	ENST00000534358.1:c.3123G>C	p.Lys1041Asn	p.K1041N	ENST00000534358	NM_005933.3	1041	aaG/aaC					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26828827	26828827	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	132	350	0	ENST00000381527.3:c.49G>T	p.Glu17Ter	p.E17*	ENST00000381527	NM_001260.1	17	Gag/Tag					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26911769	26911769	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			514	90	391	0	ENST00000381527.3:c.194G>C	p.Arg65Thr	p.R65T	ENST00000381527	NM_001260.1	65	aGa/aCa					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81528560	81528560	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	97	485	0	ENST00000298171.2:c.239G>C	p.Arg80Thr	p.R80T	ENST00000298171	NM_000369.2	80	aGa/aCa					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779159	3779159	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	193	267	0	ENST00000262367.5:c.5889G>T	p.Glu1963Asp	p.E1963D	ENST00000262367	NM_004380.2	1963	gaG/gaT					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23641458	23641458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			792	174	680	0	ENST00000261584.4:c.2017G>C	p.Glu673Gln	p.E673Q	ENST00000261584	NM_024675.3	673	Gag/Cag					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67116194	67116194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			703	148	481	0	ENST00000412916.2:c.478C>G	p.His160Asp	p.H160D	ENST00000412916		160	Cat/Gat					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89869707	89869707	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			861	217	627	0	ENST00000389301.3:c.752C>G	p.Ser251Ter	p.S251*	ENST00000389301	NM_000135.2	251	tCa/tGa					NEWRECORD																																																																									
NCOR1	9611	MSKCC	GRCh37	17	16001811	16001811	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	140	358	0	ENST00000268712.3:c.2691-1G>A		p.X897_splice	ENST00000268712	NM_006311.3	897						NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37682491	37682491	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			785	119	440	0	ENST00000447079.4:c.3682G>C	p.Glu1228Gln	p.E1228Q	ENST00000447079	NM_015083.1	1228	Gag/Cag					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59770816	59770816	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			909	154	573	0	ENST00000259008.2:c.2550G>C	p.Arg850Ser	p.R850S	ENST00000259008	NM_032043.2	850	agG/agC					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78765248	78765248	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			785	236	375	0	ENST00000306801.3:c.831-2A>T		p.X277_splice	ENST00000306801	NM_020761.2	277						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600381	10600381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	230	526	0	ENST00000171111.5:c.1474C>T	p.Pro492Ser	p.P492S	ENST00000171111	NM_203500.1	492	Cca/Tca					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15297772	15297772	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			537	235	433	0	ENST00000263388.2:c.1868A>G	p.Asp623Gly	p.D623G	ENST00000263388	NM_000435.2	623	gAc/gGc					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39742733	39742733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			777	282	505	0	ENST00000361337.2:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000361337	NM_003286.2	526	Gag/Cag					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41564754	41564754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	170	592	0	ENST00000263253.7:c.4055C>T	p.Ser1352Phe	p.S1352F	ENST00000263253	NM_001429.3	1352	tCc/tTc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41564818	41564818	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	150	517	0	ENST00000263253.7:c.4119C>G	p.Phe1373Leu	p.F1373L	ENST00000263253	NM_001429.3	1373	ttC/ttG					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41574245	41574245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			708	153	454	0	ENST00000263253.7:c.6530C>T	p.Ser2177Leu	p.S2177L	ENST00000263253	NM_001429.3	2177	tCa/tTa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720640	89720665	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTTTTTTAGGACAAAATGTTTCAC	TTTTTTTTTAGGACAAAATGTTTCAC	-			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	95	139	0	ENST00000371953.3:c.802-7_820del		p.X268_splice	ENST00000371953	NM_000314.4	268						NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88472569	88472570	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0002075-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	181	517	0	ENST00000360948.2:c.1985_1986delinsTT	p.Gln662Leu	p.Q662L	ENST00000360948	NM_001012338.2	662	cAG/cTT					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	34	226	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25470953	25470953	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	33	376	0	ENST00000264709.3:c.808G>T	p.Gly270Trp	p.G270W	ENST00000264709	NM_175629.2	270	Ggg/Tgg					NEWRECORD																																																																									
CTLA4	0	MSKCC	GRCh37	2	204736116	204736116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			630	52	357	0	ENST00000302823.3:c.473C>G	p.Pro158Arg	p.P158R	ENST00000302823	NM_005214.4	158	cCa/cGa					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128204914	128204914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	37	317	0	ENST00000341105.2:c.527C>T	p.Thr176Met	p.T176M	ENST00000341105	NM_032638.4	176	aCg/aTg					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180053207	180053207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	29	271	0	ENST00000261937.6:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000261937	NM_182925.4	388	Gag/Aag					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056210	26056210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	50	357	0	ENST00000343677.2:c.447G>T	p.Lys149Asn	p.K149N	ENST00000343677	NM_005319.3	149	aaG/aaT					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117642534	117642534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			706	40	539	0	ENST00000368508.3:c.5665C>G	p.Gln1889Glu	p.Q1889E	ENST00000368508	NM_002944.2	1889	Caa/Gaa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112553	115112553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	28	302	2	ENST00000257566.3:c.1187C>T	p.Ser396Phe	p.S396F	ENST00000257566	NM_016569.3	396	tCc/tTc					NEWRECORD																																																																									
IDH2	0	MSKCC	GRCh37	15	90631693	90631693	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	29	315	0	ENST00000330062.3:c.576C>G	p.Phe192Leu	p.F192L	ENST00000330062	NM_002168.2	192	ttC/ttG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000295-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	10	147	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001968-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	60	356	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212285246	212285246	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001968-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	73	442	0	ENST00000342788.4:c.3055G>C	p.Ala1019Pro	p.A1019P	ENST00000342788	NM_005235.2	1019	Gct/Cct					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212587153	212587153	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001968-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	104	447	0	ENST00000342788.4:c.848A>G	p.Tyr283Cys	p.Y283C	ENST00000342788	NM_005235.2	283	tAc/tGc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134884860	134884860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001968-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	48	417	0	ENST00000398015.3:c.1636G>T	p.Ala546Ser	p.A546S	ENST00000398015	NM_004441.4	546	Gca/Tca					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532927	187532927	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0001968-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			365	22	292	0	ENST00000441802.2:c.9466T>G	p.Leu3156Val	p.L3156V	ENST00000441802	NM_005245.3	3156	Tta/Gta					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151876976	151876976	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001968-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			368	63	468	0	ENST00000262189.6:c.7385A>G	p.Gln2462Arg	p.Q2462R	ENST00000262189	NM_170606.2	2462	cAg/cGg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139409769	139409769	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001968-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	70	261	0	ENST00000277541.6:c.1987G>T	p.Glu663Ter	p.E663*	ENST00000277541	NM_017617.3	663	Gag/Tag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420490	49420490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001968-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	45	369	0	ENST00000301067.7:c.15259G>A	p.Gly5087Arg	p.G5087R	ENST00000301067	NM_003482.3	5087	Gga/Aga					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61720050	61720050	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	60	274	0	ENST00000401558.2:c.1384G>T	p.Val462Phe	p.V462F	ENST00000401558	NM_003400.3	462	Gtt/Ttt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	41	276	0	ENST00000269305.4:c.757A>G	p.Thr253Ala	p.T253A	ENST00000269305	NM_001126112.2	253	Acc/Gcc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	80	246	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578430	7578431	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0003748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	24	201	0	ENST00000269305.4:c.499_500del	p.Gln167AlafsTer13	p.Q167Afs*13	ENST00000269305	NM_001126112.2	167	CAg/g					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0004105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	135	429	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38947383	38947383	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	87	297	0	ENST00000357387.3:c.4297A>G	p.Ile1433Val	p.I1433V	ENST00000357387	NM_152756.3	1433	Ata/Gta					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405292	70405292	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	64	336	0	ENST00000373644.4:c.2806A>G	p.Thr936Ala	p.T936A	ENST00000373644	NM_030625.2	936	Act/Gct					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70348228	70348228	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	146	417	1	ENST00000374080.3:c.3292G>C	p.Ala1098Pro	p.A1098P	ENST00000374080		1098	Gcc/Ccc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242470	55242493	+	protein_altering_variant	In_Frame_Del	DEL	TAAGAGAAGCAACATCTCCGAAAG	TAAGAGAAGCAACATCTCCGAAAG	CGATGT			P-0004105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	66	282	0	ENST00000275493.2:c.2240_2263delinsCGATGT	p.Leu747_Ala755delinsSerMetSer	p.L747_A755delinsSMS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCCGAAAGcc/tCGATGTcc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112155011	112155011	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000563-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	56	189	0	ENST00000257430.4:c.1282G>A	p.Glu428Lys	p.E428K	ENST00000257430	NM_000038.5	428	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000563-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			124	25	200	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7125470	7125470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000563-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	18	425	0	ENST00000302850.5:c.3082G>A	p.Glu1028Lys	p.E1028K	ENST00000302850	NM_000208.2	1028	Gag/Aag					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142281291	142281291	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0000732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			466	54	216	0	ENST00000350721.4:c.953T>G	p.Leu318Ter	p.L318*	ENST00000350721	NM_001184.3	318	tTa/tGa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142281532	142281532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000732-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	45	291	0	ENST00000350721.4:c.712G>A	p.Glu238Lys	p.E238K	ENST00000350721	NM_001184.3	238	Gag/Aag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117730774	117730774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145609658		P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	188	374	3	ENST00000368508.3:c.260C>T	p.Ala87Val	p.A87V	ENST00000368508	NM_002944.2	87	gCg/gTg					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186503795	186503795	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	331	483	0	ENST00000323963.5:c.472G>C	p.Gly158Arg	p.G158R	ENST00000323963		158	Ggt/Cgt					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86665670	86665670	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	277	227	0	ENST00000274376.6:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000274376	NM_002890.2	551	Gaa/Taa					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93955128	93955128	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	177	451	0	ENST00000369303.4:c.2770A>G	p.Thr924Ala	p.T924A	ENST00000369303	NM_004440.3	924	Acc/Gcc					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50455114	50455114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	103	224	0	ENST00000331340.3:c.661G>C	p.Glu221Gln	p.E221Q	ENST00000331340	NM_006060.4	221	Gag/Cag					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007900	45007900	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	33	119	0	ENST00000558401.1:c.346+1G>C		p.X116_splice	ENST00000558401	NM_004048.2	116						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	314	174	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11145676	11145676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	25	226	0	ENST00000344626.4:c.4038G>T	p.Trp1346Cys	p.W1346C	ENST00000344626	NM_003072.3	1346	tgG/tgT					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741602	145741637	+	inframe_deletion	In_Frame_Del	DEL	CCCCTGGAGGGTCTTCCTCAACTGCTACAGCCCCAG	CCCCTGGAGGGTCTTCCTCAACTGCTACAGCCCCAG	-			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	33	308	0	ENST00000428558.2:c.866_901del	p.Ala289_Gly300del	p.A289_G300del	ENST00000428558	NM_004260.3	289	gCTGGGGCTGTAGCAGTTGAGGAAGACCCTCCAGGGGaa/gaa					NEWRECORD																																																																									
RB1	5925	MSKCC	GRCh37	13	48881489	48881490	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0003152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	290	252	0	ENST00000267163.4:c.219_220del	p.Arg73SerfsTer36	p.R73Sfs*36	ENST00000267163	NM_000321.2	71	AGa/a					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1003	75	538	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259610	89259610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	69	261	0	ENST00000336596.2:c.754G>T	p.Val252Leu	p.V252L	ENST00000336596	NM_005233.5	252	Gta/Tta					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178759	112178759	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			871	73	574	0	ENST00000257430.4:c.7468G>C	p.Asp2490His	p.D2490H	ENST00000257430	NM_000038.5	2490	Gat/Cat					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	25	266	0	ENST00000375023.3:c.5506G>C	p.Glu1836Gln	p.E1836Q	ENST00000375023	NM_004557.3	1836	Gag/Cag					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4383308	4383308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	64	433	0	ENST00000261254.3:c.102G>T	p.Glu34Asp	p.E34D	ENST00000261254	NM_001759.3	34	gaG/gaT					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18435490	18435490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			769	70	466	0	ENST00000266497.5:c.475G>A	p.Glu159Lys	p.E159K	ENST00000266497		159	Gaa/Aaa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133248854	133248854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			750	71	444	1	ENST00000320574.5:c.1741G>A	p.Ala581Thr	p.A581T	ENST00000320574	NM_006231.2	581	Gcc/Acc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44969442	44969442	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	95	362	0	ENST00000377967.4:c.4124T>C	p.Leu1375Pro	p.L1375P	ENST00000377967	NM_021140.2	1375	cTa/cCa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27092815	27092815	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	69	563	0	ENST00000324856.7:c.2840delC	p.Pro947HisfsTer21	p.P947Hfs*21	ENST00000324856	NM_006015.4	946	Ccc/cc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000626-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	21	369	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000626-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	52	269	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215645844	215645844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000626-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			685	94	713	0	ENST00000260947.4:c.754C>T	p.Pro252Ser	p.P252S	ENST00000260947	NM_000465.2	252	Cct/Tct					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651496	52651496	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000626-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	66	588	0	ENST00000394830.3:c.1600C>T	p.Arg534Ter	p.R534*	ENST00000394830	NM_018313.4	534	Cga/Tga					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119642274	119642274	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000626-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	30	349	0	ENST00000316626.5:c.423A>T	p.Arg141Ser	p.R141S	ENST00000316626		141	agA/agT					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106555293	106555293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000626-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	28	217	0	ENST00000369096.4:c.2410C>A	p.Pro804Thr	p.P804T	ENST00000369096	NM_001198.3	804	Ccc/Acc					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	56	408	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65325792	65325792	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	66	225	0	ENST00000342505.4:c.1330A>G	p.Ile444Val	p.I444V	ENST00000342505	NM_002227.2	444	Atc/Gtc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532626	187532626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	42	469	0	ENST00000441802.2:c.9767G>A	p.Ser3256Asn	p.S3256N	ENST00000441802	NM_005245.3	3256	aGt/aAt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	334	225	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	299	227	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	325	227	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	413	240	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193094251	193094251	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			889	185	290	1	ENST00000367435.3:c.141G>T	p.Lys47Asn	p.K47N	ENST00000367435	NM_024529.4	47	aaG/aaT					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226570814	226570814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			638	206	202	2	ENST00000366794.5:c.1082C>A	p.Thr361Asn	p.T361N	ENST00000366794	NM_001618.3	361	aCc/aAc					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243736238	243736238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			574	104	137	0	ENST00000263826.5:c.809G>A	p.Arg270His	p.R270H	ENST00000263826	NM_005465.4	270	cGt/cAt					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25497950	25497950	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	75	129	0	ENST00000264709.3:c.499C>T	p.Arg167Trp	p.R167W	ENST00000264709	NM_175629.2	167	Cgg/Tgg					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38958863	38958863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			722	402	305	0	ENST00000357387.3:c.2249G>A	p.Trp750Ter	p.W750*	ENST00000357387	NM_152756.3	750	tGg/tAg					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371005	55371005	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	70	136	0	ENST00000297316.4:c.307G>T	p.Gly103Cys	p.G103C	ENST00000297316	NM_022454.3	103	Ggc/Tgc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108203549	108203549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	134	132	0	ENST00000278616.4:c.7849G>A	p.Val2617Ile	p.V2617I	ENST00000278616	NM_000051.3	2617	Gtc/Atc					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610687	81610687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			292	90	221	1	ENST00000298171.2:c.2285C>T	p.Thr762Met	p.T762M	ENST00000298171	NM_000369.2	762	aCg/aTg					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59853886	59853886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	136	302	0	ENST00000259008.2:c.1973G>A	p.Arg658Gln	p.R658Q	ENST00000259008	NM_032043.2	658	cGg/cAg					NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5231335	5231335	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs769069932		P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	45	211	0	ENST00000357368.4:c.2141G>A	p.Arg714His	p.R714H	ENST00000357368	NM_002850.3	714	cGc/cAc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17949084	17949084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	169	259	2	ENST00000458235.1:c.1557C>G	p.Asp519Glu	p.D519E	ENST00000458235	NM_000215.3	519	gaC/gaG					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226552732	226552739	+	frameshift_variant	Frame_Shift_Del	DEL	GACCCTGG	GACCCTGG	-			P-0000997-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			738	88	218	1	ENST00000366794.5:c.2622_2629del	p.Gln875SerfsTer6	p.Q875Sfs*6	ENST00000366794	NM_001618.3	874	tcCCAGGGTCtt/tctt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198265540	198265540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	175	345	0	ENST00000335508.6:c.2617G>A	p.Glu873Lys	p.E873K	ENST00000335508	NM_012433.2	873	Gag/Aag					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73349348	73349348	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	165	269	1	ENST00000377767.4:c.987+1G>T		p.X329_splice	ENST00000377767	NM_014953.3	329						NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779565	3779565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	38	363	0	ENST00000262367.5:c.5483A>G	p.Tyr1828Cys	p.Y1828C	ENST00000262367	NM_004380.2	1828	tAc/tGc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86627283	86627283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	46	293	0	ENST00000274376.6:c.660del	p.Ser222AlafsTer3	p.S222Afs*3	ENST00000274376	NM_002890.2	220	Ttt/tt					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266105	41266119	+	protein_altering_variant	In_Frame_Del	DEL	AATCCATTCTGGTGC	AATCCATTCTGGTGC	TGT			P-0003773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	102	307	0	ENST00000349496.5:c.102_116delinsTGT	p.Ile35_Ala39delinsVal	p.I35_A39delinsV	ENST00000349496	NM_001904.3	34	ggAATCCATTCTGGTGCc/ggTGTc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0003773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	112	278	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2978342	2978342	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000482-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			461	127	365	0	ENST00000396946.4:c.988G>T	p.Ala330Ser	p.A330S	ENST00000396946	NM_032415.4	330	Gcc/Tcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000482-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	210	499	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939062	76939065	+	frameshift_variant	Frame_Shift_Del	DEL	TTTT	TTTT	-			P-0000482-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1107	358	612	0	ENST00000373344.5:c.1683_1686delAAAA	p.Lys562Ter	p.K562*	ENST00000373344	NM_000489.3	561	gtAAAA/gt					NEWRECORD																																																																									
TNFRSF14	0	MSKCC	GRCh37	1	2491290	2491290	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	386	312	0	ENST00000355716.4:c.333C>G	p.Cys111Trp	p.C111W	ENST00000355716	NM_003820.2	111	tgC/tgG					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9775912	9775912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	326	337	0	ENST00000377346.4:c.376C>G	p.His126Asp	p.H126D	ENST00000377346	NM_005026.3	126	Cac/Gac					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106180840	106180840	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			696	422	341	0	ENST00000380013.4:c.3868T>C	p.Ser1290Pro	p.S1290P	ENST00000380013	NM_001127208.2	1290	Tca/Cca					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93637076	93637076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			751	494	325	1	ENST00000375746.1:c.1126G>T	p.Glu376Ter	p.E376*	ENST00000375746	NM_001174167.1	376	Gaa/Taa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133249288	133249288	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1027	382	400	0	ENST00000320574.5:c.1611G>C	p.Glu537Asp	p.E537D	ENST00000320574	NM_006231.2	537	gaG/gaC					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48936995	48936995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001704-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	518	377	0	ENST00000267163.4:c.763C>T	p.Arg255Ter	p.R255*	ENST00000267163	NM_000321.2	255	Cga/Tga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			215	164	257	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			223	317	371	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0001961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			663	176	408	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			288	353	469	0	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185181413	185181413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			856	244	577	0	ENST00000265026.3:c.1354G>A	p.Glu452Lys	p.E452K	ENST00000265026	NM_004721.4	452	Gaa/Aaa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66217180	66217180	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			652	45	535	0	ENST00000273854.3:c.2435T>C	p.Leu812Pro	p.L812P	ENST00000273854	NM_004439.5	812	cTt/cCt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			372	260	368	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29004222	29004222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			875	150	443	0	ENST00000282397.4:c.1071G>T	p.Met357Ile	p.M357I	ENST00000282397	NM_002019.4	357	atG/atT					NEWRECORD																																																																									
IDH2	0	MSKCC	GRCh37	15	90628326	90628326	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147578332		P-0001961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			376	316	395	0	ENST00000330062.3:c.1085G>A	p.Arg362Gln	p.R362Q	ENST00000330062	NM_002168.2	362	cGg/cAg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	904	349	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70404534	70404534	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			765	607	508	0	ENST00000373644.4:c.2048A>C	p.Gln683Pro	p.Q683P	ENST00000373644	NM_030625.2	683	cAa/cCa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941628	48941628	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	999	305	0	ENST00000267163.4:c.940-2A>G		p.X314_splice	ENST00000267163	NM_000321.2	314						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577113	7577113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	927	440	0	ENST00000269305.4:c.825T>G	p.Cys275Trp	p.C275W	ENST00000269305	NM_001126112.2	275	tgT/tgG					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118945	3118945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	151	346	0	ENST00000078429.4:c.629G>T	p.Arg210Leu	p.R210L	ENST00000078429	NM_002067.2	210	cGg/cTg					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57466856	57466856	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	124	271	0	ENST00000371085.3:c.75G>C	p.Lys25Asn	p.K25N	ENST00000371085	NM_000516.4	25	aaG/aaC					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123159723	123159723	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002091-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1682	284	531	0	ENST00000218089.9:c.78T>A	p.Asp26Glu	p.D26E	ENST00000218089	NM_001042749.1	26	gaT/gaA					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69458752	69458754	+	missense_variant	Missense_Mutation	ONP	TGC	TGC	GCA			P-0001312-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			828	89	273	0	ENST00000227507.2:c.567_569inv	p.Cys189_Ala190delinsTrpHis	p.C189_A190delinsWH	ENST00000227507	NM_053056.2	189	tgTGCc/tgGCAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0001312-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	453	318	0	ENST00000269305.4:c.993+1G>C		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151845894	151845894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001845-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			297	104	274	0	ENST00000262189.6:c.13118C>A	p.Pro4373Gln	p.P4373Q	ENST00000262189	NM_170606.2	4373	cCa/cAa					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105243048	105243048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001845-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	153	228	0	ENST00000349310.3:c.235C>A	p.Gln79Lys	p.Q79K	ENST00000349310	NM_001014432.1	79	Cag/Aag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29653152	29653152	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001845-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	86	178	0	ENST00000358273.4:c.5150A>G	p.Glu1717Gly	p.E1717G	ENST00000358273	NM_001042492.2	1717	gAg/gGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	98	303	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0003259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	140	426	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81346550	81346550	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs148293411		P-0003259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	110	386	0	ENST00000222390.5:c.1403G>A	p.Arg468His	p.R468H	ENST00000222390	NM_000601.4	468	cGt/cAt					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17945961	17945961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	161	585	0	ENST00000458235.1:c.1978G>C	p.Ala660Pro	p.A660P	ENST00000458235	NM_000215.3	660	Gct/Cct					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1192	360	451	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			548	891	421	1	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	135	367	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	135	449	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	395904	395904	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			705	90	483	0	ENST00000380956.4:c.461T>C	p.Met154Thr	p.M154T	ENST00000380956	NM_001195286.1	154	aTg/aCg					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148513825	148513825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			822	78	446	0	ENST00000320356.2:c.1456C>T	p.Pro486Ser	p.P486S	ENST00000320356	NM_004456.4	486	Ccc/Tcc					NEWRECORD																																																																									
EED	0	MSKCC	GRCh37	11	85968616	85968618	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0002309-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			881	96	394	0	ENST00000263360.6:c.615_617del	p.Leu207del	p.L207del	ENST00000263360	NM_003797.3	204	aaTCTt/aat					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191513	10191513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003546-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			218	130	294	0	ENST00000256474.2:c.506T>C	p.Leu169Pro	p.L169P	ENST00000256474	NM_000551.3	169	cTa/cCa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164757	47164757	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003546-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			163	117	215	0	ENST00000409792.3:c.1369G>T	p.Glu457Ter	p.E457*	ENST00000409792	NM_014159.6	457	Gag/Tag					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43609061	43609061	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003546-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			526	271	635	0	ENST00000355710.3:c.1817A>T	p.Tyr606Phe	p.Y606F	ENST00000355710	NM_020975.4	606	tAt/tTt					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70406490	70406490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003546-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			410	160	302	0	ENST00000373644.4:c.4004C>T	p.Pro1335Leu	p.P1335L	ENST00000373644	NM_030625.2	1335	cCa/cTa					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112915518	112915518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003546-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			517	222	418	0	ENST00000351677.2:c.917A>G	p.Asn306Ser	p.N306S	ENST00000351677	NM_002834.3	306	aAt/aGt					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9624937	9624937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003546-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			516	182	343	0	ENST00000353224.5:c.40C>G	p.Pro14Ala	p.P14A	ENST00000353224	NM_177990.2	14	Ccg/Gcg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52598129	52598139	+	frameshift_variant	Frame_Shift_Del	DEL	AATTTCTTCAT	AATTTCTTCAT	-			P-0003546-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			322	199	436	0	ENST00000394830.3:c.3727_3737del	p.Met1243GlnfsTer11	p.M1243Qfs*11	ENST00000394830	NM_018313.4	1243	ATGAAGAAATTc/c					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002279-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	112	468	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106687	27106687	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002279-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	136	534	0	ENST00000324856.7:c.6298C>T	p.Gln2100Ter	p.Q2100*	ENST00000324856	NM_006015.4	2100	Cag/Tag					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150550867	150550867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002279-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	178	460	0	ENST00000369026.2:c.789G>T	p.Arg263Ser	p.R263S	ENST00000369026	NM_021960.4	263	agG/agT					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139395006	139395006	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0002279-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	77	258	0	ENST00000277541.6:c.5932C>T	p.Gln1978Ter	p.Q1978*	ENST00000277541	NM_017617.3	1978	Cag/Tag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378667	25378667	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002279-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			752	175	599	0	ENST00000256078.4:c.331A>C	p.Met111Leu	p.M111L	ENST00000256078	NM_033360.2	111	Atg/Ctg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974739	21974739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002279-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	89	474	0	ENST00000304494.5:c.88del	p.Ala30ArgfsTer23	p.A30Rfs*23	ENST00000304494	NM_000077.4	30	Gcg/cg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974739	21974739	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002279-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	89	474	0	ENST00000304494.5:c.88del	p.Ala30ArgfsTer23	p.A30Rfs*23	ENST00000304494	NM_000077.4	30	Gcg/cg					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128204758	128204758	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001141-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			738	511	583	0	ENST00000341105.2:c.683C>A	p.Pro228His	p.P228H	ENST00000341105	NM_032638.4	228	cCc/cAc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927384	178927384	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0001141-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			698	132	328	0	ENST00000263967.3:c.1147T>C	p.Trp383Arg	p.W383R	ENST00000263967	NM_006218.2	383	Tgg/Cgg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2953022	2953022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001141-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			620	71	320	0	ENST00000396946.4:c.2918G>A	p.Arg973His	p.R973H	ENST00000396946	NM_032415.4	973	cGc/cAc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			446	19	182	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113272	209113272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1078	84	403	0	ENST00000345146.2:c.235G>A	p.Asp79Asn	p.D79N	ENST00000345146	NM_005896.2	79	Gat/Aat					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180057595	180057595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			854	54	443	0	ENST00000261937.6:c.360C>G	p.Ile120Met	p.I120M	ENST00000261937	NM_182925.4	120	atC/atG					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20402737	20402737	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			703	38	246	0	ENST00000346618.3:c.274G>C	p.Glu92Gln	p.E92Q	ENST00000346618	NM_001949.4	92	Gag/Cag					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137519599	137519599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1133	85	410	0	ENST00000367739.4:c.1039G>C	p.Glu347Gln	p.E347Q	ENST00000367739	NM_000416.2	347	Gaa/Caa					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741836	145741836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1469	84	416	0	ENST00000428558.2:c.667G>A	p.Gly223Ser	p.G223S	ENST00000428558	NM_004260.3	223	Ggt/Agt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108190766	108190766	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			732	46	295	0	ENST00000278616.4:c.6433G>T	p.Glu2145Ter	p.E2145*	ENST00000278616	NM_000051.3	2145	Gaa/Taa					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26974662	26974662	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			725	117	384	0	ENST00000381527.3:c.1006T>G	p.Leu336Val	p.L336V	ENST00000381527	NM_001260.1	336	Tta/Gta					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436290	110436290	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			187	52	74	0	ENST00000375856.3:c.2111C>T	p.Ser704Phe	p.S704F	ENST00000375856	NM_003749.2	704	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001568-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			418	163	246	0	ENST00000269305.4:c.376-1G>T		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001078-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			382	161	470	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001078-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			300	93	339	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102098302	102098302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001078-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			474	168	452	0	ENST00000282441.5:c.1266G>T	p.Glu422Asp	p.E422D	ENST00000282441	NM_001130145.2	422	gaG/gaT					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67100658	67100658	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001078-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			487	192	551	0	ENST00000412916.2:c.356T>A	p.Leu119Gln	p.L119Q	ENST00000412916		119	cTg/cAg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68844181	68844184	+	missense_variant	Missense_Mutation	ONP	GACA	GACA	AATG			P-0001078-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			299	178	503	0	ENST00000261769.5:c.769_772delinsAATG	p.Asp257_Asn258delinsAsnAsp	p.D257_N258delinsND	ENST00000261769	NM_004360.3	257	GACAac/AATGac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			277	64	261	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106164812	106164812	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			353	21	270	0	ENST00000380013.4:c.3680T>C	p.Val1227Ala	p.V1227A	ENST00000380013	NM_001127208.2	1227	gTg/gCg					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26923210	26923210	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	G			P-0003511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			417	152	395	0	ENST00000381527.3:c.206T>G	p.Leu69Ter	p.L69*	ENST00000381527	NM_001260.1	69	tTa/tGa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44923033	44923033	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			314	31	271	0	ENST00000377967.4:c.1894T>A	p.Trp632Arg	p.W632R	ENST00000377967	NM_021140.2	632	Tgg/Agg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115927	8115928	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0003511-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			401	30	291	0	ENST00000346208.3:c.1273_1274delinsAT	p.Pro425Ile	p.P425I	ENST00000346208		425	CCa/ATa					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7980313	7980313	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003971-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			68	11	131	0	ENST00000319144.4:c.1270T>C	p.Tyr424His	p.Y424H	ENST00000319144	NM_001139.2	424	Tac/Cac					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67593284	67593299	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGCTATGGCTTTGC	CTGGCTATGGCTTTGC	-			P-0003971-T02-IM5									Unknown	UNKNOWN				MSK-IMPACT			127	20	367	0	ENST00000274335.5:c.2031_2046del	p.Gly678SerfsTer9	p.G678Sfs*9	ENST00000274335		677	aCTGGCTATGGCTTTGCc/ac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001528-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			195	214	366	0	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056648	26056648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001528-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			156	72	89	0	ENST00000343677.2:c.9G>C	p.Glu3Asp	p.E3D	ENST00000343677	NM_005319.3	3	gaG/gaC					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89690802	89690802	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0001528-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			187	202	273	0	ENST00000371953.3:c.210-1G>C		p.X70_splice	ENST00000371953	NM_000314.4	70						NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48027998	48027998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	87	171	0	ENST00000234420.5:c.2876G>A	p.Arg959His	p.R959H	ENST00000234420	NM_000179.2	959	cGc/cAc					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149460348	149460348	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	32	137	0	ENST00000286301.3:c.289A>C	p.Ile97Leu	p.I97L	ENST00000286301	NM_005211.3	97	Atc/Ctc					NEWRECORD																																																																									
CDKN2B	0	MSKCC	GRCh37	9	22006042	22006042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	93	156	0	ENST00000276925.6:c.361G>A	p.Glu121Lys	p.E121K	ENST00000276925	NM_004936.3	121	Gag/Aag					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3900680	3900680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	43	123	0	ENST00000262367.5:c.416G>A	p.Ser139Asn	p.S139N	ENST00000262367	NM_004380.2	139	aGc/aAc					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241667364	241667367	+	frameshift_variant	Frame_Shift_Del	DEL	TTCA	TTCA	-			P-0003749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	279	387	2	ENST00000366560.3:c.1083_1086delTGAA	p.Glu362GlnfsTer10	p.E362Qfs*10	ENST00000366560	NM_000143.3	361	aaTGAA/aa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440373	52440373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002840-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			748	59	391	0	ENST00000460680.1:c.679N>T	p.Arg227Cys	p.R227C	ENST00000460680	NM_004656.3	227	Cgc/Tgc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176721879	176721879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002840-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	129	451	0	ENST00000439151.2:c.7510G>C	p.Val2504Leu	p.V2504L	ENST00000439151	NM_022455.4	2504	Gtt/Ctt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002840-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			748	305	668	0	ENST00000269305.4:c.636delT	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0001108-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	183	419	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11998995	11998995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001108-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	112	271	0	ENST00000353533.5:c.497G>A	p.Gly166Asp	p.G166D	ENST00000353533	NM_003010.3	166	gGt/gAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000465-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	618	155	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000465-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	254	200	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000938-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	121	233	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100081	27100081	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000938-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			880	146	418	0	ENST00000324856.7:c.3877G>T	p.Gly1293Ter	p.G1293*	ENST00000324856	NM_006015.4	1293	Gga/Tga					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176639190	176639190	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000938-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	22	55	0	ENST00000439151.2:c.3790G>C	p.Glu1264Gln	p.E1264Q	ENST00000439151	NM_022455.4	1264	Gaa/Caa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11272518	11272518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	22	210	0	ENST00000361445.4:c.3412A>T	p.Thr1138Ser	p.T1138S	ENST00000361445	NM_004958.3	1138	Act/Tct					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220437227	220437227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	24	482	1	ENST00000243786.2:c.131C>T	p.Pro44Leu	p.P44L	ENST00000243786	NM_002191.3	44	cCc/cTc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176665421	176665421	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	50	303	0	ENST00000439151.2:c.4105C>G	p.Pro1369Ala	p.P1369A	ENST00000439151	NM_022455.4	1369	Ccg/Gcg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434609	49434609	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	16	214	0	ENST00000301067.7:c.6944A>C	p.His2315Pro	p.H2315P	ENST00000301067	NM_003482.3	2315	cAc/cCc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39933761	39933761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	78	158	1	ENST00000378444.4:c.838G>A	p.Val280Ile	p.V280I	ENST00000378444	NM_001123385.1	280	Gtc/Atc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0003437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	242	446	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0003437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	89	373	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0003437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	77	211	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	115	378	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048131	180048131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	52	413	0	ENST00000261937.6:c.2142C>A	p.Asp714Glu	p.D714E	ENST00000261937	NM_182925.4	714	gaC/gaA					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28895656	28895656	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	137	408	0	ENST00000282397.4:c.3118G>A	p.Asp1040Asn	p.D1040N	ENST00000282397	NM_002019.4	1040	Gat/Aat					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17350487	17350487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002697-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	190	499	0	ENST00000375499.3:c.623G>T	p.Gly208Val	p.G208V	ENST00000375499	NM_003000.2	208	gGg/gTg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266107	41266107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002697-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	167	528	0	ENST00000349496.5:c.104T>G	p.Ile35Ser	p.I35S	ENST00000349496	NM_001904.3	35	aTc/aGc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118390382	118390382	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002697-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	141	582	0	ENST00000534358.1:c.11197del	p.Leu3733SerfsTer29	p.L3733Sfs*29	ENST00000534358	NM_005933.3	3732	ttC/tt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11303249	11303249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			743	67	440	0	ENST00000361445.4:c.1334G>C	p.Arg445Thr	p.R445T	ENST00000361445	NM_004958.3	445	aGg/aCg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248471	212248471	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1125	89	567	0	ENST00000342788.4:c.3796T>C	p.Tyr1266His	p.Y1266H	ENST00000342788	NM_005235.2	1266	Tat/Cat					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356415	66356415	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			642	56	305	0	ENST00000273854.3:c.1082C>A	p.Pro361His	p.P361H	ENST00000273854	NM_004439.5	361	cCt/cAt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187542810	187542810	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1145	67	533	0	ENST00000441802.2:c.4930A>G	p.Ser1644Gly	p.S1644G	ENST00000441802	NM_005245.3	1644	Agt/Ggt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628452	187628452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			807	64	521	0	ENST00000441802.2:c.2530G>A	p.Val844Ile	p.V844I	ENST00000441802	NM_005245.3	844	Gtt/Att					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81331980	81331980	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1120	162	428	0	ENST00000222390.5:c.2104C>G	p.Arg702Gly	p.R702G	ENST00000222390	NM_000601.4	702	Cgt/Ggt					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145737591	145737591	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			513	90	435	0	ENST00000428558.2:c.3172C>G	p.Arg1058Gly	p.R1058G	ENST00000428558	NM_004260.3	1058	Cgt/Ggt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8517883	8517883	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1230	113	574	0	ENST00000356435.5:c.1508T>A	p.Leu503His	p.L503H	ENST00000356435		503	cTt/cAt					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110434487	110434487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	51	435	0	ENST00000375856.3:c.3914G>T	p.Gly1305Val	p.G1305V	ENST00000375856	NM_003749.2	1305	gGg/gTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	61	558	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261						NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42795484	42795484	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	45	416	0	ENST00000575354.2:c.2564G>T	p.Gly855Val	p.G855V	ENST00000575354	NM_015125.3	855	gGc/gTc					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30032866	30032866	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	41	298	0	ENST00000338641.4:c.240+1G>T		p.X80_splice	ENST00000338641	NM_000268.3	80						NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141498	11141498	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000405-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	51	603	0	ENST00000344626.4:c.3480delG	p.Leu1161SerfsTer3	p.L1161Sfs*3	ENST00000344626	NM_003072.3	1159	Ggg/gg					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	37020673	37020673	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003589-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			240	154	310	1	ENST00000358127.4:c.172C>G	p.Leu58Val	p.L58V	ENST00000358127	NM_001280556.1	58	Ctt/Gtt					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53223917	53223917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003589-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			159	139	165	0	ENST00000375401.3:c.3442G>A	p.Val1148Met	p.V1148M	ENST00000375401	NM_004187.3	1148	Gtg/Atg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70354698	70354698	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0003589-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			183	123	201	0	ENST00000374080.3:c.4863G>T	p.Gln1621His	p.Q1621H	ENST00000374080		1621	caG/caT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	135	344	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0003518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	119	355	0	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16062133	16062133	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	101	486	0	ENST00000268712.3:c.673C>A	p.Pro225Thr	p.P225T	ENST00000268712	NM_006311.3	225	Cct/Act					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89499382	89499382	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000546-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	136	286	0	ENST00000336596.2:c.2552C>G	p.Ala851Gly	p.A851G	ENST00000336596	NM_005233.5	851	gCt/gGt					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738975	145738975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000546-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			103	44	182	0	ENST00000428558.2:c.2180C>G	p.Ala727Gly	p.A727G	ENST00000428558	NM_004260.3	727	gCc/gGc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000546-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	46	445	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2210451	2210451	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000546-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			110	34	273	0	ENST00000398665.3:c.1058C>T	p.Ala353Val	p.A353V	ENST00000398665	NM_032482.2	353	gCg/gTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	191	603	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224						NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152009027	152009027	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	116	273	0	ENST00000262189.6:c.595C>T	p.Arg199Ter	p.R199*	ENST00000262189	NM_170606.2	199	Cga/Tga					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9523268	9523268	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001274-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	210	617	0	ENST00000353224.5:c.1969delG	p.Asp657ThrfsTer7	p.D657Tfs*7	ENST00000353224	NM_177990.2	657	Gac/ac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	460	339	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57751983	57751983	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0003216-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	239	206	0	ENST00000274289.3:c.1255-1G>T		p.X419_splice	ENST00000274289	NM_006622.3	419						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001747-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			153	179	449	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
EED	0	MSKCC	GRCh37	11	85989475	85989475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001747-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	37	520	2	ENST00000263360.6:c.1234G>A	p.Ala412Thr	p.A412T	ENST00000263360	NM_003797.3	412	Gct/Act					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371676	55371683	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGCTGC	GCGGCTGC	-			P-0001747-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			708	72	351	0	ENST00000297316.4:c.369_376del	p.Leu124AlafsTer35	p.L124Afs*35	ENST00000297316	NM_022454.3	122	gaGCGGCTGCgc/gagc					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371727	55371729	+	inframe_deletion	In_Frame_Del	DEL	GCG	GCG	-			P-0001747-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			562	59	283	0	ENST00000297316.4:c.423_425del	p.Arg142del	p.R142del	ENST00000297316	NM_022454.3	139	ccGCGg/ccg					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371821	55371823	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0001747-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	13	18	0	ENST00000297316.4:c.514_516del	p.Gly172del	p.G172del	ENST00000297316	NM_022454.3	171	GGC/-					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0000963-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	203	348	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579440	7579440	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000963-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	74	215	0	ENST00000269305.4:c.247delG	p.Ala83ArgfsTer40	p.A83Rfs*40	ENST00000269305	NM_001126112.2	83	Gcg/cg					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38508291	38508291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000963-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	174	433	0	ENST00000254066.5:c.599C>T	p.Pro200Leu	p.P200L	ENST00000254066	NM_000964.3	200	cCt/cTt					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20483139	20483139	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000073-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			448	222	342	0	ENST00000346618.3:c.872C>A	p.Ser291Ter	p.S291*	ENST00000346618	NM_001949.4	291	tCa/tAa					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89805077	89805077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000073-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			710	153	385	2	ENST00000389301.3:c.4300G>A	p.Ala1434Thr	p.A1434T	ENST00000389301	NM_000135.2	1434	Gcc/Acc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27094351	27094351	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000073-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			380	214	338	0	ENST00000324856.7:c.3060delG	p.Lys1021ArgfsTer18	p.K1021Rfs*18	ENST00000324856	NM_006015.4	1020	aGg/ag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000359-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	151	273	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0000830-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	140	232	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89880930	89880930	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0004061-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			584	421	484	0	ENST00000389301.3:c.281T>C	p.Ile94Thr	p.I94T	ENST00000389301	NM_000135.2	94	aTa/aCa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176740	112176743	+	frameshift_variant	Frame_Shift_Del	DEL	AAAA	AAAA	-			P-0004061-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			144	278	465	0	ENST00000257430.4:c.5450_5453delAAAA	p.Lys1817IlefsTer45	p.K1817Ifs*45	ENST00000257430	NM_000038.5	1817	AAAAat/at					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000269-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			62	77	157	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106829	27106829	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000269-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	191	187	0	ENST00000324856.7:c.6440T>C	p.Leu2147Ser	p.L2147S	ENST00000324856	NM_006015.4	2147	tTg/tCg					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000269-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	90	297	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106850	27106853	+	missense_variant	Missense_Mutation	ONP	TCCT	TCCT	CCCC			P-0000269-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			55	180	183	0	ENST00000324856.7:c.6461_6464delTCCTinsCCCC	p.PheLeu2154SerPro	p.FL2154SP	ENST00000324856	NM_006015.4	2154	tTCCTc/tCCCCc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0003714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	229	322	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042766	42042766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	148	631	1	ENST00000219905.7:c.6961G>T	p.Asp2321Tyr	p.D2321Y	ENST00000219905	NM_001164273.1	2321	Gat/Tat					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77054904	77054906	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			P-0003714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	129	531	0	ENST00000356341.3:c.956_958del	p.Met319del	p.M319del	ENST00000356341	NM_002576.4	319	aTGAgg/agg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			428	59	400	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	52	367	0	ENST00000342988.3:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000342988	NM_005359.5	351	Gat/Tat					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77048449	77048449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	58	313	0	ENST00000356341.3:c.1136T>G	p.Phe379Cys	p.F379C	ENST00000356341	NM_002576.4	379	tTc/tGc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31376690	31376690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	35	273	0	ENST00000328111.2:c.685G>A	p.Val229Met	p.V229M	ENST00000328111	NM_006892.3	229	Gtg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577525	7577533	+	inframe_deletion	In_Frame_Del	DEL	GAGGATGGG	GAGGATGGG	-			P-0001380-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	34	221	0	ENST00000269305.4:c.748_756del	p.Pro250_Leu252del	p.P250_L252del	ENST00000269305	NM_001126112.2	250	CCCATCCTC/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002905-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	112	469	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242794422	242794422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002905-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	85	420	1	ENST00000334409.5:c.520G>A	p.Val174Met	p.V174M	ENST00000334409	NM_005018.2	174	Gtg/Atg					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11998901	11998901	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002905-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	187	386	1	ENST00000353533.5:c.403T>A	p.Ser135Thr	p.S135T	ENST00000353533	NM_003010.3	135	Tca/Aca					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207204	1207204	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0002905-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	106	243	0	ENST00000326873.7:c.290+2T>A		p.X97_splice	ENST00000326873	NM_000455.4	97						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610423	10610423	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002905-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	186	410	0	ENST00000171111.5:c.287A>G	p.His96Arg	p.H96R	ENST00000171111	NM_203500.1	96	cAc/cGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	94	218	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164557	112164557	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs144056494		P-0004025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	35	84	0	ENST00000257430.4:c.1631T>C	p.Ile544Thr	p.I544T	ENST00000257430	NM_000038.5	544	aTt/aCt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	59	253	0	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2226294	2226294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	53	182	0	ENST00000326181.6:c.1907C>T	p.Thr636Met	p.T636M	ENST00000326181	NM_032271.2	636	aCg/aTg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790027	40790027	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	53	135	0	ENST00000373198.4:c.2704A>G	p.Arg902Gly	p.R902G	ENST00000373198	NM_133170.3	902	Aga/Gga					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81359053	81359053	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	33	454	0	ENST00000222390.5:c.908C>G	p.Thr303Ser	p.T303S	ENST00000222390	NM_000601.4	303	aCt/aGt					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508349	106508349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	16	107	0	ENST00000359195.3:c.343G>T	p.Val115Leu	p.V115L	ENST00000359195	NM_002649.2	115	Gtg/Ttg					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2161390	2161390	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	55	448	0	ENST00000434045.2:c.137G>T	p.Arg46Leu	p.R46L	ENST00000434045	NM_001127598.1	46	cGc/cTc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220703	1220703	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	41	347	0	ENST00000326873.7:c.721G>C	p.Ala241Pro	p.A241P	ENST00000326873	NM_000455.4	241	Gct/Cct					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602764	10602764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	44	358	2	ENST00000171111.5:c.814C>T	p.Arg272Cys	p.R272C	ENST00000171111	NM_203500.1	272	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577137	7577138	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	40	431	0	ENST00000269305.4:c.800_801delinsTT	p.Arg267Leu	p.R267L	ENST00000269305	NM_001126112.2	267	cGG/cTT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001427-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	32	312	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001427-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	65	320	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332						NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49438209	49438209	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001427-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			267	25	473	0	ENST00000301067.7:c.5060G>T	p.Arg1687Leu	p.R1687L	ENST00000301067	NM_003482.3	1687	cGc/cTc					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56492721	56492722	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0001427-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	60	394	0	ENST00000407977.2:c.217_218delinsTT	p.Ala73Phe	p.A73F	ENST00000407977		73	GCt/TTt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593602	55593613	+	inframe_deletion	In_Frame_Del	DEL	GTGGAAGGTTGT	GTGGAAGGTTGT	-			P-0001461-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			768	385	365	0	ENST00000288135.5:c.1668_1679del	p.Gln556_Val560delinsHis	p.Q556_V560delinsH	ENST00000288135	NM_000222.2	556	caGTGGAAGGTTGTt/cat					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165074	47165074	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002228-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	138	397	0	ENST00000409792.3:c.1052T>A	p.Phe351Tyr	p.F351Y	ENST00000409792	NM_014159.6	351	tTt/tAt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152265578	152265578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002228-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			430	24	189	0	ENST00000206249.3:c.1031G>A	p.Gly344Asp	p.G344D	ENST00000206249	NM_000125.3	344	gGc/gAc					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21563185	21563185	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002228-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	62	295	0	ENST00000382592.4:c.734A>G	p.His245Arg	p.H245R	ENST00000382592	NM_014572.2	245	cAc/cGc					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9560947	9560947	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001398-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	81	425	0	ENST00000353224.5:c.835C>A	p.Gln279Lys	p.Q279K	ENST00000353224	NM_177990.2	279	Cag/Aag					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002369-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			756	31	737	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577222	64577224	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0002369-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	264	633	0	ENST00000337652.1:c.358_360del	p.Lys120del	p.K120del	ENST00000337652	NM_130803.2	120	AAG/-					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717608	89717608	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002369-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	31	427	0	ENST00000371953.3:c.635-2A>G		p.X212_splice	ENST00000371953	NM_000314.4	212						NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2962849	2962849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002369-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	149	621	0	ENST00000396946.4:c.2059G>A	p.Ala687Thr	p.A687T	ENST00000396946	NM_032415.4	687	Gcg/Acg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106863	27106867	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGA	AAAGA	-			P-0002369-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	104	448	0	ENST00000324856.7:c.6475_6479del	p.Lys2159ProfsTer64	p.K2159Pfs*64	ENST00000324856	NM_006015.4	2158	cgAAAGAac/cgac					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76778784	76778786	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0002369-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	57	1032	5	ENST00000373344.5:c.6793_6795del	p.Glu2265del	p.E2265del	ENST00000373344	NM_000489.3	2265	GAG/-					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692922	89692922	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000805-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			465	165	279	0	ENST00000371953.3:c.406T>C	p.Cys136Arg	p.C136R	ENST00000371953	NM_000314.4	136	Tgt/Cgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0001419-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	433	400	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8111554	8111554	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001419-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	469	428	0	ENST00000346208.3:c.1040T>G	p.Leu347Arg	p.L347R	ENST00000346208		347	cTt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576875	7576875	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	264	265	0	ENST00000269305.4:c.971A>C	p.Asp324Ala	p.D324A	ENST00000269305	NM_001126112.2	324	gAt/gCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576869	7576870	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0003535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	257	260	0	ENST00000269305.4:c.976_977del	p.Glu326IlefsTer10	p.E326Ifs*10	ENST00000269305	NM_001126112.2	326	GAa/a					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000946-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	88	135	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151882675	151882675	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000197-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			946	74	341	1	ENST00000262189.6:c.5050A>C	p.Lys1684Gln	p.K1684Q	ENST00000262189	NM_170606.2	1684	Aaa/Caa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577587	7577587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000197-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	51	318	0	ENST00000269305.4:c.694A>T	p.Ile232Phe	p.I232F	ENST00000269305	NM_001126112.2	232	Atc/Ttc					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	756709	756709	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000197-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1466	110	552	0	ENST00000314574.4:c.119C>G	p.Ser40Ter	p.S40*	ENST00000314574	NM_005433.3	40	tCa/tGa					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0001222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	33	112	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99156051	99156051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			599	50	427	0	ENST00000074304.5:c.731G>A	p.Arg244Gln	p.R244Q	ENST00000074304	NM_001134224.1	244	cGg/cAg					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056020	26056020	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			465	84	263	1	ENST00000343677.2:c.637A>T	p.Lys213Ter	p.K213*	ENST00000343677	NM_005319.3	213	Aaa/Taa					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135779180	135779180	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200827913		P-0001222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	88	289	0	ENST00000298552.3:c.2066G>A	p.Arg689His	p.R689H	ENST00000298552	NM_001162426.1	689	cGc/cAc					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89805331	89805331	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	33	342	0	ENST00000389301.3:c.4219A>C	p.Ile1407Leu	p.I1407L	ENST00000389301	NM_000135.2	1407	Ata/Cta					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	74	260	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7976123	7976123	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	108	371	0	ENST00000319144.4:c.2072A>C	p.Asp691Ala	p.D691A	ENST00000319144	NM_001139.2	691	gAc/gCc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141546	11141546	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	108	421	0	ENST00000344626.4:c.3523G>A	p.Asp1175Asn	p.D1175N	ENST00000344626	NM_003072.3	1175	Gac/Aac					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52724339	52724339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001222-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			650	36	403	0	ENST00000322088.6:c.1471G>A	p.Gly491Arg	p.G491R	ENST00000322088	NM_014225.5	491	Gga/Aga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	81	253	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	160	606	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17371294	17371294	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	41	461	0	ENST00000375499.3:c.162C>A	p.Asp54Glu	p.D54E	ENST00000375499	NM_003000.2	54	gaC/gaA					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176638571	176638571	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	140	436	0	ENST00000439151.2:c.3171del	p.Gln1058SerfsTer5	p.Q1058Sfs*5	ENST00000439151	NM_022455.4	1057	aaT/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	151	624	0	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169278	32169278	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0003676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	47	339	0	ENST00000375023.3:c.3756-1G>C		p.X1252_splice	ENST00000375023	NM_004557.3	1252						NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437215	52437237	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCTGTCCGTGGCTTCCACGAC	CTGCTGTCCGTGGCTTCCACGAC	-			P-0000286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			144	12	660	0	ENST00000460680.1:c.1807_1829delGTCGTGGAAGCCACGGACAGCAG	p.Val603ArgfsTer32	p.V603Rfs*32	ENST00000460680	NM_004656.3	603	GTCGTGGAAGCCACGGACAGCAGa/a					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005020	150005020	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs67278685		P-0000286-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	20	384	0	ENST00000253339.5:c.1205delA	p.Asn402MetfsTer8	p.N402Mfs*8	ENST00000253339		402	aAt/at					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532897	187532897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000392-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			844	52	247	0	ENST00000441802.2:c.9496G>A	p.Asp3166Asn	p.D3166N	ENST00000441802	NM_005245.3	3166	Gac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000392-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	19	163	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123195125	123195125	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000392-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1275	81	327	0	ENST00000218089.9:c.1468G>T	p.Glu490Ter	p.E490*	ENST00000218089	NM_001042749.1	490	Gag/Tag					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70005651	70005651	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	32	243	0	ENST00000352241.4:c.983T>C	p.Leu328Pro	p.L328P	ENST00000352241	NM_198159.2	328	cTa/cCa					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29091774	29091774	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	16	156	0	ENST00000328354.6:c.1183G>C	p.Val395Leu	p.V395L	ENST00000328354	NM_007194.3	395	Gtt/Ctt					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922051	39922051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	67	202	0	ENST00000378444.4:c.4121G>T	p.Arg1374Met	p.R1374M	ENST00000378444	NM_001123385.1	1374	aGg/aTg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0000145-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	71	320	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577510	7577511	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0000145-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	48	292	0	ENST00000269305.4:c.770_771delTG	p.Leu257ArgfsTer6	p.L257Rfs*6	ENST00000269305	NM_001126112.2	257	cTG/c					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	41	157	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245404	153245404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	79	201	0	ENST00000281708.4:c.1787C>T	p.Ser596Phe	p.S596F	ENST00000281708	NM_033632.3	596	tCt/tTt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	100	153	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174152	112174152	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	86	229	0	ENST00000257430.4:c.2861T>A	p.Leu954Ter	p.L954*	ENST00000257430	NM_000038.5	954	tTa/tAa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	82	87	0	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	14026284	14026284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	108	164	0	ENST00000405192.2:c.160C>A	p.Gln54Lys	p.Q54K	ENST00000405192	NM_001163147.1	54	Cag/Aag					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	396853	396853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	102	322	0	ENST00000262320.3:c.173C>T	p.Thr58Met	p.T58M	ENST00000262320	NM_003502.3	58	aCg/aTg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	91	160	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117648	70117648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	105	334	0	ENST00000245479.2:c.116C>G	p.Ser39Cys	p.S39C	ENST00000245479	NM_000346.3	39	tCc/tGc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602808	10602808	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	115	255	0	ENST00000171111.5:c.770G>A	p.Cys257Tyr	p.C257Y	ENST00000171111	NM_203500.1	257	tGc/tAc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000678-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	144	246	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
CDKN2C	0	MSKCC	GRCh37	1	51439712	51439712	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	82	220	0	ENST00000262662.1:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000262662		93	Caa/Taa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	168	311	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20148701	20148727	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AATGTATCAGTTTCATTGATTTTAGCT	AATGTATCAGTTTCATTGATTTTAGCT	-			P-0000890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			64	44	141	0	ENST00000379607.5:c.338-2_362del		p.X113_splice	ENST00000379607	NM_001412.3	113						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002458-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	89	608	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002458-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	49	259	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002458-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	49	259	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26032039	26032039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002458-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	56	317	0	ENST00000244661.2:c.250C>A	p.Arg84Ser	p.R84S	ENST00000244661	NM_003537.3	84	Cgc/Agc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101707	27101712	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	CATTGG	CATTGG	A			P-0002458-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	38	401	0	ENST00000324856.7:c.4989_4993+1delinsA		p.X1663_splice	ENST00000324856	NM_006015.4	1663						NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604764	48604766	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0002458-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	67	537	0	ENST00000342988.3:c.1586_1588del	p.Leu529_His530delinsTyr	p.L529_H530delinsY	ENST00000342988	NM_005359.5	529	tTACac/tac					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0004238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	45	287	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55575705	55575708	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTA	AGTA	-			P-0004238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	43	258	0	ENST00000288135.5:c.1231+5_1231+8del		p.X411_splice	ENST00000288135	NM_000222.2	411						NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66781554	66781554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001027-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	27	427	0	ENST00000307102.5:c.962C>A	p.Pro321His	p.P321H	ENST00000307102	NM_002755.3	321	cCt/cAt					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104263932	104263948	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCCCCGGCCCCACC	GCGCCCCCGGCCCCACC	-			P-0001027-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			137	16	87	0	ENST00000369902.3:c.37_53del	p.Thr13TrpfsTer29	p.T13Wfs*29	ENST00000369902	NM_016169.3	8	gGCGCCCCCGGCCCCACC/g					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29462563	29462563	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	115	268	0	ENST00000389048.3:c.2338G>A	p.Glu780Lys	p.E780K	ENST00000389048	NM_004304.4	780	Gag/Aag					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101908839	101908839	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1301	73	451	0	ENST00000374994.4:c.1203C>G	p.Ile401Met	p.I401M	ENST00000374994	NM_004612.2	401	atC/atG					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49438231	49438231	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			770	192	427	0	ENST00000301067.7:c.5038G>T	p.Glu1680Ter	p.E1680*	ENST00000301067	NM_003482.3	1680	Gag/Tag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49443499	49443499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	34	207	0	ENST00000301067.7:c.3872G>A	p.Arg1291Gln	p.R1291Q	ENST00000301067	NM_003482.3	1291	cGg/cAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	495	497	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041563	47041563	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	G			P-0000307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	138	381	0	ENST00000329236.7:c.1554T>G	p.Tyr518Ter	p.Y518*	ENST00000329236	NM_001204466.1	518	taT/taG					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15303039	15303039	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000307-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	43	120	0	ENST00000263388.2:c.411delG	p.Asp139MetfsTer97	p.D139Mfs*97	ENST00000263388	NM_000435.2	137	ggG/gg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000413-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	18	163	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	19	314	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16254684	16254684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	32	548	0	ENST00000375759.3:c.1949A>G	p.Tyr650Cys	p.Y650C	ENST00000375759	NM_015001.2	650	tAt/tGt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123185221	123185221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	37	271	0	ENST00000218089.9:c.1173A>G	p.Ile391Met	p.I391M	ENST00000218089	NM_001042749.1	391	atA/atG					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87475990	87475990	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000218-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			885	80	518	0	ENST00000277120.3:c.1432A>G	p.Arg478Gly	p.R478G	ENST00000277120		478	Aga/Gga					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101891298	101891298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000218-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			892	115	578	1	ENST00000374994.4:c.259G>A	p.Ala87Thr	p.A87T	ENST00000374994	NM_004612.2	87	Gca/Aca					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53225145	53225145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000218-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			858	170	817	0	ENST00000375401.3:c.3073G>A	p.Ala1025Thr	p.A1025T	ENST00000375401	NM_004187.3	1025	Gct/Act					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47158153	47158153	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	99	493	0	ENST00000409792.3:c.4546T>C	p.Cys1516Arg	p.C1516R	ENST00000409792	NM_014159.6	1516	Tgt/Cgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	103	151	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	240	358	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149562	202149562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	209	280	0	ENST00000358485.4:c.1003G>A	p.Glu335Lys	p.E335K	ENST00000358485	NM_001080125.1	335	Gag/Aag					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149574	202149574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	210	284	0	ENST00000358485.4:c.1015G>C	p.Glu339Gln	p.E339Q	ENST00000358485	NM_001080125.1	339	Gag/Cag					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220439878	220439878	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148455844		P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	188	376	0	ENST00000243786.2:c.731C>T	p.Ser244Phe	p.S244F	ENST00000243786	NM_002191.3	244	tCt/tTt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47059211	47059211	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	250	212	0	ENST00000409792.3:c.7450C>T	p.Gln2484Ter	p.Q2484*	ENST00000409792	NM_014159.6	2484	Cag/Tag					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187542342	187542342	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	124	188	0	ENST00000441802.2:c.5398G>C	p.Asp1800His	p.D1800H	ENST00000441802	NM_005245.3	1800	Gat/Cat					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38950024	38950024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	130	224	0	ENST00000357387.3:c.3926C>T	p.Ala1309Val	p.A1309V	ENST00000357387	NM_152756.3	1309	gCt/gTt					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2984157	2984157	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	63	117	0	ENST00000396946.4:c.373G>C	p.Glu125Gln	p.E125Q	ENST00000396946	NM_032415.4	125	Gag/Cag					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139417337	139417337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	89	161	0	ENST00000277541.6:c.707C>T	p.Thr236Met	p.T236M	ENST00000277541	NM_017617.3	236	aCg/aTg					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70446328	70446328	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	266	367	0	ENST00000373644.4:c.5268G>C	p.Lys1756Asn	p.K1756N	ENST00000373644	NM_030625.2	1756	aaG/aaC					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246017	46246017	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	234	290	0	ENST00000334344.6:c.4111C>G	p.His1371Asp	p.H1371D	ENST00000334344	NM_152641.2	1371	Cat/Gat					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21557738	21557738	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	200	323	0	ENST00000382592.4:c.2107G>A	p.Asp703Asn	p.D703N	ENST00000382592	NM_014572.2	703	Gat/Aat					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99250978	99250978	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	138	320	0	ENST00000268035.6:c.282G>C	p.Glu94Asp	p.E94D	ENST00000268035	NM_000875.3	94	gaG/gaC					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	132	253	0	ENST00000337432.4:c.61C>G	p.Pro21Ala	p.P21A	ENST00000337432	NM_058216.2	21	Cca/Gca					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30303646	30303646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	131	268	0	ENST00000262643.3:c.74C>T	p.Ser25Leu	p.S25L	ENST00000262643	NM_001238.2	25	tCg/tTg					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31385038	31385038	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	133	233	0	ENST00000328111.2:c.1423C>T	p.Gln475Ter	p.Q475*	ENST00000328111	NM_006892.3	475	Cag/Tag					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412392	63412392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	238	402	1	ENST00000330258.3:c.775G>A	p.Glu259Lys	p.E259K	ENST00000330258	NM_152424.3	259	Gaa/Aaa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938094	76938094	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	134	337	0	ENST00000373344.5:c.2654G>C	p.Arg885Thr	p.R885T	ENST00000373344	NM_000489.3	885	aGa/aCa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27102081	27102091	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGCGGGTAA	ATGGCGGGTAA	G			P-0004450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	184	329	0	ENST00000324856.7:c.5007_5017delinsG	p.Trp1670Ter	p.W1670*	ENST00000324856	NM_006015.4	1669	gcATGGCGGGTAAtg/gcGtg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117663692	117663692	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	25	241	0	ENST00000368508.3:c.4540A>G	p.Ile1514Val	p.I1514V	ENST00000368508	NM_002944.2	1514	Ata/Gta					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0000695-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	11	137	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000695-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	24	235	1	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000695-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	27	165	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41385221	41385221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000695-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	109	282	0	ENST00000373198.4:c.740G>A	p.Arg247His	p.R247H	ENST00000373198	NM_133170.3	247	cGc/cAc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70357069	70357069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200279192		P-0000695-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	16	352	0	ENST00000374080.3:c.5584C>T	p.Arg1862Cys	p.R1862C	ENST00000374080		1862	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002564-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	132	264	0	ENST00000269305.4:c.712T>G	p.Cys238Gly	p.C238G	ENST00000269305	NM_001126112.2	238	Tgt/Ggt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	96	246	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178805	112178805	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147549623		P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	61	470	2	ENST00000257430.4:c.7514G>A	p.Arg2505Gln	p.R2505Q	ENST00000257430	NM_000038.5	2505	cGa/cAa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	63	212	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17371343	17371343	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143058777		P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	143	437	0	ENST00000375499.3:c.113G>A	p.Arg38His	p.R38H	ENST00000375499	NM_003000.2	38	cGt/cAt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56480320	56480320	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			378	72	329	0	ENST00000267101.3:c.427C>A	p.Leu143Met	p.L143M	ENST00000267101	NM_001982.3	143	Ctg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577091	7577091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149633775		P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			311	184	449	0	ENST00000269305.4:c.847C>T	p.Arg283Cys	p.R283C	ENST00000269305	NM_001126112.2	283	Cgc/Tgc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40748596	40748596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	43	351	0	ENST00000373198.4:c.2920C>T	p.Arg974Trp	p.R974W	ENST00000373198	NM_133170.3	974	Cgg/Tgg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174623	112174624	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	G			P-0002670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	122	467	0	ENST00000257430.4:c.3332_3333delinsG	p.Glu1111GlyfsTer15	p.E1111Gfs*15	ENST00000257430	NM_000038.5	1111	gAA/gG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578245	7578245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	8	519	0	ENST00000269305.4:c.604C>T	p.Arg202Cys	p.R202C	ENST00000269305	NM_001126112.2	202	Cgt/Tgt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433068	49433075	+	frameshift_variant	Frame_Shift_Del	DEL	CTAGGGAA	CTAGGGAA	A			P-0003390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	63	474	0	ENST00000301067.7:c.8297_8303delTCCCTAG	p.Phe2766SerfsTer19	p.F2766Sfs*19	ENST00000301067	NM_003482.3	2766	TTCCCTAGc/Tc					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64573830	64573830	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002913-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	283	219	0	ENST00000337652.1:c.938C>A	p.Ser313Ter	p.S313*	ENST00000337652	NM_130803.2	313	tCa/tAa					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	129	334	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436632	52436633	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0000741-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			48	93	217	0	ENST00000460680.1:c.2041_2042del	p.Met681AlafsTer35	p.M681Afs*35	ENST00000460680	NM_004656.3	681	ATg/g					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138417912	138417912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	73	485	0	ENST00000289153.2:c.1607C>T	p.Pro536Leu	p.P536L	ENST00000289153	NM_006219.2	536	cCt/cTt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164642	112164642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	79	347	0	ENST00000257430.4:c.1716G>C	p.Leu572Phe	p.L572F	ENST00000257430	NM_000038.5	572	ttG/ttC					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81374438	81374438	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0004280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	54	447	1	ENST00000222390.5:c.626-2A>T		p.X209_splice	ENST00000222390	NM_000601.4	209						NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72829283	72829283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	274	705	2	ENST00000268489.5:c.7298C>T	p.Ala2433Val	p.A2433V	ENST00000268489	NM_006885.3	2433	gCg/gTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	31	585	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0004672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	34	487	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	44	369	0	ENST00000359013.4:c.1657C>G	p.Arg553Gly	p.R553G	ENST00000359013	NM_001024847.2	553	Cgt/Ggt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	11	157	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0003782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	20	290	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	17	276	0	ENST00000269305.4:c.706T>C	p.Tyr236His	p.Y236H	ENST00000269305	NM_001126112.2	236	Tac/Cac					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001498-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			334	14	419	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	180	398	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	268	575	1	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72400777	72400777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	130	543	1	ENST00000357731.5:c.394C>A	p.His132Asn	p.H132N	ENST00000357731	NM_173808.2	132	Cat/Aat					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67569259	67569259	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	60	254	0	ENST00000274335.5:c.376G>T	p.Asp126Tyr	p.D126Y	ENST00000274335		126	Gac/Tac					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77043873	77043873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	161	570	0	ENST00000356341.3:c.1453C>T	p.Gln485Ter	p.Q485*	ENST00000356341	NM_002576.4	485	Cag/Tag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444978	49444978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	19	81	0	ENST00000301067.7:c.2488G>A	p.Glu830Lys	p.E830K	ENST00000301067	NM_003482.3	830	Gaa/Aaa					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23649396	23649396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	99	400	0	ENST00000261584.4:c.103C>T	p.Leu35Phe	p.L35F	ENST00000261584	NM_024675.3	35	Ctt/Ttt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29664598	29664598	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	215	243	0	ENST00000358273.4:c.6640G>T	p.Glu2214Ter	p.E2214*	ENST00000358273	NM_001042492.2	2214	Gag/Tag					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40371810	40371810	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	181	321	0	ENST00000293328.3:c.601G>T	p.Glu201Ter	p.E201*	ENST00000293328	NM_012448.3	201	Gag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610123	10610123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	240	471	0	ENST00000171111.5:c.587G>T	p.Cys196Phe	p.C196F	ENST00000171111	NM_203500.1	196	tGt/tTt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76812936	76812936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	92	375	0	ENST00000373344.5:c.6685C>T	p.Pro2229Ser	p.P2229S	ENST00000373344	NM_000489.3	2229	Ccc/Tcc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76907627	76907627	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	120	530	0	ENST00000373344.5:c.4534C>A	p.Arg1512Ser	p.R1512S	ENST00000373344	NM_000489.3	1512	Cgt/Agt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11319453	11319453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	115	499	0	ENST00000361445.4:c.14G>C	p.Gly5Ala	p.G5A	ENST00000361445	NM_004958.3	5	gGa/gCa					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675877	30675877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	184	973	0	ENST00000376406.3:c.2479G>A	p.Glu827Lys	p.E827K	ENST00000376406	NM_014641.2	827	Gag/Aag					NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40441912	40441912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	724	1190	0	ENST00000345506.4:c.157G>A	p.Asp53Asn	p.D53N	ENST00000345506	NM_003152.3	53	Gac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577512	7577513	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0004612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	172	466	0	ENST00000269305.4:c.768_769delAC	p.Leu257GlyfsTer6	p.L257Gfs*6	ENST00000269305	NM_001126112.2	256	acACtg/actg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			884	257	274	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150004217	150004217	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1408	186	388	1	ENST00000253339.5:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000253339		670	Cgg/Tgg					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32421553	32421553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	68	142	0	ENST00000332351.3:c.1039C>T	p.Pro347Ser	p.P347S	ENST00000332351	NM_024426.4	347	Ccc/Tcc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0000635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1250	171	320	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36987033	36987033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	78	205	0	ENST00000354822.5:c.656C>T	p.Pro219Leu	p.P219L	ENST00000354822	NM_001079668.2	219	cCg/cTg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441333	52441333	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001917-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	72	452	0	ENST00000460680.1:c.438-1G>A		p.X146_splice	ENST00000460680	NM_004656.3	146						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	61	391	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	53	225	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001525-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	725	444	0	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001525-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	386	343	0	ENST00000269305.4:c.503A>G	p.His168Arg	p.H168R	ENST00000269305	NM_001126112.2	168	cAc/cGc					NEWRECORD																																																																									
LMO1	0	MSKCC	GRCh37	11	8251982	8251982	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001525-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	223	487	0	ENST00000335790.3:c.95del	p.Lys32ArgfsTer6	p.K32Rfs*6	ENST00000335790	NM_002315.2	32	aAg/ag					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1279558	1279558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002415-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	69	380	0	ENST00000310581.5:c.1978G>A	p.Ala660Thr	p.A660T	ENST00000310581	NM_198253.2	660	Gca/Aca					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176483	112176483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002415-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	191	442	1	ENST00000257430.4:c.5192C>A	p.Ala1731Asp	p.A1731D	ENST00000257430	NM_000038.5	1731	gCt/gAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	174	315	2	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	26	356	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	57	407	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72748072	72748072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	49	534	0	ENST00000357731.5:c.106C>T	p.Gln36Ter	p.Q36*	ENST00000357731	NM_173808.2	36	Cag/Tag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47142949	47142949	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	82	271	1	ENST00000409792.3:c.5014G>T	p.Gly1672Ter	p.G1672*	ENST00000409792	NM_014159.6	1672	Gga/Tga					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42052606	42052606	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	85	474	0	ENST00000219905.7:c.7277G>T	p.Arg2426Leu	p.R2426L	ENST00000219905	NM_001164273.1	2426	cGg/cTg					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23652447	23652447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	36	350	0	ENST00000261584.4:c.32G>T	p.Cys11Phe	p.C11F	ENST00000261584	NM_024675.3	11	tGt/tTt					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56864483	56864483	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	151	478	0	ENST00000308159.5:c.971A>G	p.Tyr324Cys	p.Y324C	ENST00000308159	NM_014669.4	324	tAc/tGc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44929255	44929255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	69	246	0	ENST00000377967.4:c.2355G>T	p.Met785Ile	p.M785I	ENST00000377967	NM_021140.2	785	atG/atT					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720670	89720670	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	22	83	0	ENST00000371953.3:c.821G>A	p.Trp274Ter	p.W274*	ENST00000371953	NM_000314.4	274	tGg/tAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578202	7578202	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			614	97	745	0	ENST00000269305.4:c.647T>A	p.Val216Glu	p.V216E	ENST00000269305	NM_001126112.2	216	gTg/gAg					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42845405	42845405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	178	373	0	ENST00000398585.3:c.857A>G	p.Asn286Ser	p.N286S	ENST00000398585	NM_001135099.1	286	aAc/aGc					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123156482	123156482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1461	127	785	0	ENST00000218089.9:c.5T>A	p.Ile2Lys	p.I2K	ENST00000218089	NM_001042749.1	2	aTa/aAa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002737-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			164	9	115	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243736329	243736329	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002737-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			368	33	263	0	ENST00000263826.5:c.718G>A	p.Glu240Lys	p.E240K	ENST00000263826	NM_005465.4	240	Gag/Aag					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48025796	48025796	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002737-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			281	34	272	0	ENST00000234420.5:c.674T>C	p.Ile225Thr	p.I225T	ENST00000234420	NM_000179.2	225	aTt/aCt					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47688794	47688794	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002737-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			343	175	271	0	ENST00000347630.2:c.506A>G	p.Asn169Ser	p.N169S	ENST00000347630	NM_001007230.1	169	aAc/aGc					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33792700	33792700	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002737-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			207	24	45	0	ENST00000498907.2:c.621G>C	p.Gln207His	p.Q207H	ENST00000498907	NM_004364.3	207	caG/caC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577049	7577049	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002737-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			404	106	283	0	ENST00000269305.4:c.889delC	p.His297ThrfsTer48	p.H297Tfs*48	ENST00000269305	NM_001126112.2	297	Cac/ac					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	85	241	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696652	47696652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	207	474	0	ENST00000347630.2:c.296G>A	p.Arg99Gln	p.R99Q	ENST00000347630	NM_001007230.1	99	cGg/cAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	119	382	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	128	248	1	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149515397	149515397	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs17110944		P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	14	224	0	ENST00000261799.4:c.85A>T	p.Ile29Phe	p.I29F	ENST00000261799	NM_002609.3	29	Atc/Ttc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630597	187630597	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs41278611		P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	16	496	0	ENST00000441802.2:c.385G>C	p.Val129Leu	p.V129L	ENST00000441802	NM_005245.3	129	Gtg/Ctg					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241663795	241663795	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	39	141	0	ENST00000366560.3:c.1332G>T	p.Arg444Ser	p.R444S	ENST00000366560	NM_000143.3	444	agG/agT					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30142931	30142931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	144	371	0	ENST00000389048.3:c.595G>A	p.Gly199Ser	p.G199S	ENST00000389048	NM_004304.4	199	Ggc/Agc					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48025969	48025969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	115	278	0	ENST00000234420.5:c.847G>T	p.Gly283Trp	p.G283W	ENST00000234420	NM_000179.2	283	Ggg/Tgg					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215645471	215645471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	68	595	0	ENST00000260947.4:c.1127C>T	p.Ser376Leu	p.S376L	ENST00000260947	NM_000465.2	376	tCa/tTa					NEWRECORD																																																																									
NPM1	0	MSKCC	GRCh37	5	170819735	170819735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	123	138	0	ENST00000296930.5:c.374C>T	p.Ser125Leu	p.S125L	ENST00000296930	NM_002520.6	125	tCa/tTa					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944985	31944985	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs3759295		P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	22	276	0	ENST00000340398.3:c.116A>C	p.His39Pro	p.H39P	ENST00000340398	NM_001013699.2	39	cAt/cCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578548	7578548	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			154	114	192	0	ENST00000269305.4:c.382C>G	p.Pro128Ala	p.P128A	ENST00000269305	NM_001126112.2	128	Cct/Gct					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5265205	5265205	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			124	119	235	0	ENST00000357368.4:c.382G>T	p.Asp128Tyr	p.D128Y	ENST00000357368	NM_002850.3	128	Gac/Tac					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41420088	41420088	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	74	204	0	ENST00000373198.4:c.233A>G	p.Asn78Ser	p.N78S	ENST00000373198	NM_133170.3	78	aAc/aGc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39911382	39911382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	88	488	0	ENST00000378444.4:c.5248G>T	p.Ala1750Ser	p.A1750S	ENST00000378444	NM_001123385.1	1750	Gcc/Tcc					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100608326	100608326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	135	534	0	ENST00000308731.7:c.1764G>T	p.Trp588Cys	p.W588C	ENST00000308731	NM_000061.2	588	tgG/tgT					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123196808	123196808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	59	523	0	ENST00000218089.9:c.1695G>T	p.Glu565Asp	p.E565D	ENST00000218089	NM_001042749.1	565	gaG/gaT					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955485	48955499	+	inframe_deletion	In_Frame_Del	DEL	GTTTTATCAAAGCAG	GTTTTATCAAAGCAG	-			P-0001257-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	48	355	0	ENST00000267163.4:c.1601_1615del	p.Ser534_Glu539delinsLys	p.S534_E539delinsK	ENST00000267163	NM_000321.2	534	aGTTTTATCAAAGCAGaa/aaa					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	153	361	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	202	462	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187517959	187517959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	114	374	0	ENST00000441802.2:c.12735A>G	p.Ile4245Met	p.I4245M	ENST00000441802	NM_005245.3	4245	atA/atG					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508689	106508689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	98	336	0	ENST00000359195.3:c.683C>A	p.Thr228Asn	p.T228N	ENST00000359195	NM_002649.2	228	aCc/aAc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70450747	70450747	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	139	374	0	ENST00000373644.4:c.5587A>C	p.Lys1863Gln	p.K1863Q	ENST00000373644	NM_030625.2	1863	Aag/Cag					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114799860	114799860	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	115	609	0	ENST00000543371.1:c.527G>T	p.Arg176Leu	p.R176L	ENST00000543371	NM_001198531.1	176	cGg/cTg					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119169100	119169100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	47	322	0	ENST00000264033.4:c.2284A>T	p.Thr762Ser	p.T762S	ENST00000264033	NM_005188.3	762	Act/Tct					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66937401	66937401	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	217	570	0	ENST00000374690.3:c.2255G>A	p.Trp752Ter	p.W752*	ENST00000374690	NM_000044.3	752	tGg/tAg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971036	21971037	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	103	159	1	ENST00000304494.5:c.321_322del	p.Asp108CysfsTer11	p.D108Cfs*11	ENST00000304494	NM_000077.4	107	cgCGat/cgat					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971036	21971037	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	103	159	1	ENST00000304494.5:c.321_322del	p.Asp108CysfsTer11	p.D108Cfs*11	ENST00000304494	NM_000077.4	107	cgCGat/cgat					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971036	21971037	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0003595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	103	159	1	ENST00000304494.5:c.321_322del	p.Asp108CysfsTer11	p.D108Cfs*11	ENST00000304494	NM_000077.4	107	cgCGat/cgat					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441252	52441252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002843-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			610	56	251	0	ENST00000460680.1:c.518A>G	p.Tyr173Cys	p.Y173C	ENST00000460680	NM_004656.3	173	tAt/tGt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183833	10183835	+	missense_variant	Missense_Mutation	ONP	TGC	TGC	CTA			P-0002843-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			371	53	148	0	ENST00000256474.2:c.302_304delinsCTA	p.Leu101_Pro102delinsProThr	p.L101_P102delinsPT	ENST00000256474	NM_000551.3	101	cTGCcg/cCTAcg					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14029530	14029530	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002843-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			413	30	151	0	ENST00000311895.7:c.1741T>C	p.Tyr581His	p.Y581H	ENST00000311895	NM_005236.2	581	Tat/Cat					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610154	10610154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	448	504	0	ENST00000171111.5:c.556G>T	p.Gly186Cys	p.G186C	ENST00000171111	NM_203500.1	186	Ggc/Tgc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	487	345	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226555950	226555950	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	265	288	0	ENST00000366794.5:c.2227G>T	p.Asp743Tyr	p.D743Y	ENST00000366794	NM_001618.3	743	Gac/Tac					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221279	1221309	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAAGGGGAGCTACGCCATCCCGGGCGACT	GGGAAGGGGAGCTACGCCATCCCGGGCGACT	-			P-0004591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	317	408	1	ENST00000326873.7:c.803_833del	p.Gly268ValfsTer9	p.G268Vfs*9	ENST00000326873	NM_000455.4	268	GGGAAGGGGAGCTACGCCATCCCGGGCGACTgt/gt					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	28	290	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16256499	16256499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			793	148	330	0	ENST00000375759.3:c.3764C>T	p.Ser1255Phe	p.S1255F	ENST00000375759	NM_015001.2	1255	tCt/tTt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16259667	16259667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	115	251	0	ENST00000375759.3:c.6932C>T	p.Ser2311Leu	p.S2311L	ENST00000375759	NM_015001.2	2311	tCa/tTa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16260717	16260717	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			651	133	303	0	ENST00000375759.3:c.7982C>T	p.Ser2661Phe	p.S2661F	ENST00000375759	NM_015001.2	2661	tCc/tTc					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227661761	227661761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	114	265	0	ENST00000305123.5:c.1694G>A	p.Gly565Glu	p.G565E	ENST00000305123	NM_005544.2	565	gGa/gAa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89498465	89498465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	139	200	0	ENST00000336596.2:c.2437G>T	p.Val813Phe	p.V813F	ENST00000336596	NM_005233.5	813	Gtt/Ttt					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55136856	55136856	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1277	420	506	0	ENST00000257290.5:c.1178C>A	p.Thr393Asn	p.T393N	ENST00000257290	NM_006206.4	393	aCt/aAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112179278	112179278	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	303	338	0	ENST00000257430.4:c.7987G>T	p.Asp2663Tyr	p.D2663Y	ENST00000257430	NM_000038.5	2663	Gac/Tac					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157502144	157502144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			638	123	262	0	ENST00000346085.5:c.3177G>T	p.Lys1059Asn	p.K1059N	ENST00000346085	NM_020732.3	1059	aaG/aaT					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2985476	2985476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1452	141	440	0	ENST00000396946.4:c.335C>T	p.Thr112Ile	p.T112I	ENST00000396946	NM_032415.4	112	aCt/aTt					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5081856	5081856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	104	239	0	ENST00000381652.3:c.2566G>A	p.Gly856Ser	p.G856S	ENST00000381652	NM_004972.3	856	Ggc/Agc					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94180459	94180459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1594	258	637	1	ENST00000323929.3:c.1709G>A	p.Arg570Lys	p.R570K	ENST00000323929	NM_005591.3	570	aGa/aAa					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28636134	28636134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	148	399	0	ENST00000241453.7:c.238G>A	p.Ala80Thr	p.A80T	ENST00000241453	NM_004119.2	80	Gct/Act					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	339602	339602	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			927	141	472	0	ENST00000262320.3:c.2300G>C	p.Arg767Thr	p.R767T	ENST00000262320	NM_003502.3	767	aGa/aCa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857443	9857443	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1136	138	527	0	ENST00000330684.3:c.3958C>A	p.Leu1320Met	p.L1320M	ENST00000330684	NM_001134407.1	1320	Ctg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			573	394	530	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7152894	7152894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			613	136	349	0	ENST00000302850.5:c.2074G>A	p.Glu692Lys	p.E692K	ENST00000302850	NM_000208.2	692	Gaa/Aaa					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1513	330	815	0	ENST00000377045.4:c.641C>A	p.Ser214Tyr	p.S214Y	ENST00000377045	NM_001654.4	214	tCc/tAc					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48650304	48650304	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1291	167	681	0	ENST00000376670.3:c.274C>A	p.Pro92Thr	p.P92T	ENST00000376670	NM_002049.3	92	Cca/Aca					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765730	66765730	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1632	480	898	0	ENST00000374690.3:c.742G>T	p.Gly248Cys	p.G248C	ENST00000374690	NM_000044.3	248	Ggc/Tgc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70345955	70345955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000554-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1812	201	688	0	ENST00000374080.3:c.2492C>T	p.Ala831Val	p.A831V	ENST00000374080		831	gCt/gTt					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	63	324	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	251	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	77	370	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175621	112175621	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	144	692	0	ENST00000257430.4:c.4330C>T	p.Gln1444Ter	p.Q1444*	ENST00000257430	NM_000038.5	1444	Caa/Taa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11169361	11169361	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	76	699	0	ENST00000361445.4:c.7514G>C	p.Arg2505Pro	p.R2505P	ENST00000361445	NM_004958.3	2505	cGa/cCa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49438703	49438703	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	175	438	0	ENST00000301067.7:c.4787G>T	p.Gly1596Val	p.G1596V	ENST00000301067	NM_003482.3	1596	gGc/gTc					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58144446	58144446	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140644696		P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	228	352	0	ENST00000257904.6:c.625C>T	p.Arg209Cys	p.R209C	ENST00000257904	NM_000075.3	209	Cgt/Tgt					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	265	511	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604750	48604750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	304	496	0	ENST00000342988.3:c.1572G>T	p.Trp524Cys	p.W524C	ENST00000342988	NM_005359.5	524	tgG/tgT					NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22160230	22160230	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	110	440	0	ENST00000215832.6:c.401T>C	p.Leu134Pro	p.L134P	ENST00000215832	NM_002745.4	134	cTc/cCc					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67358533	67358599	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTGCTGGGCTGGAAGAAGGGCGAGCAGAACGGGCAGGAGGAGAAATGGTGCGAGAAGGCGGTCAA	GCCTGCTGGGCTGGAAGAAGGGCGAGCAGAACGGGCAGGAGGAGAAATGGTGCGAGAAGGCGGTCAA	-			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	53	376	0	ENST00000327367.4:c.42_108del	p.Leu15AlafsTer79	p.L15Afs*79	ENST00000327367	NM_005902.3	14	cGCCTGCTGGGCTGGAAGAAGGGCGAGCAGAACGGGCAGGAGGAGAAATGGTGCGAGAAGGCGGTCAAg/cg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120205	70120226	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCCCAGCCACTACAGCGAGC	AGCCCCAGCCACTACAGCGAGC	-			P-0004220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	114	379	0	ENST00000245479.2:c.1210_1231del	p.Pro404SerfsTer59	p.P404Sfs*59	ENST00000245479	NM_000346.3	403	AGCCCCAGCCACTACAGCGAGCag/ag					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46531821	46531821	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	86	564	1	ENST00000262741.5:c.526G>C	p.Ala176Pro	p.A176P	ENST00000262741	NM_003629.3	176	Gca/Cca					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870999	12870999	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	54	370	0	ENST00000228872.4:c.226T>G	p.Trp76Gly	p.W76G	ENST00000228872	NM_004064.3	76	Tgg/Ggg					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180057329	180057329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	16	272	0	ENST00000261937.6:c.409C>G	p.Gln137Glu	p.Q137E	ENST00000261937	NM_182925.4	137	Cag/Gag					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119148981	119148981	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	58	357	0	ENST00000264033.4:c.1201T>A	p.Cys401Ser	p.C401S	ENST00000264033	NM_005188.3	401	Tgc/Agc					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89836428	89836428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	31	212	0	ENST00000389301.3:c.2321C>T	p.Pro774Leu	p.P774L	ENST00000389301	NM_000135.2	774	cCg/cTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578480	7578495	+	frameshift_variant	Frame_Shift_Del	DEL	TGTGGAATCAACCCAC	TGTGGAATCAACCCAC	-			P-0003861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	41	260	0	ENST00000269305.4:c.435_450del	p.Trp146ProfsTer19	p.W146Pfs*19	ENST00000269305	NM_001126112.2	145	ctGTGGGTTGATTCCACA/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	179	433	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0003705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	211	503	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55233039	55233039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	84	493	0	ENST00000275493.2:c.1789G>A	p.Ala597Thr	p.A597T	ENST00000275493	NM_005228.3	597	Gca/Aca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	95	362	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			75	32	278	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023735	27023735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	24	105	0	ENST00000324856.7:c.841G>T	p.Ala281Ser	p.A281S	ENST00000324856	NM_006015.4	281	Gcg/Tcg					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45798266	45798266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	14	304	0	ENST00000372115.3:c.628G>A	p.Ala210Thr	p.A210T	ENST00000372115	NM_001048171.1	210	Gcc/Acc					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085647	16085647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	14	303	0	ENST00000281043.3:c.823G>A	p.Glu275Lys	p.E275K	ENST00000281043	NM_005378.4	275	Gaa/Aaa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55569972	55569972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	32	435	0	ENST00000288135.5:c.839C>A	p.Ala280Glu	p.A280E	ENST00000288135	NM_000222.2	280	gCg/gAg					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35867448	35867448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	53	301	0	ENST00000303115.3:c.262C>A	p.Leu88Ile	p.L88I	ENST00000303115	NM_002185.3	88	Cta/Ata					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91328180	91328180	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	36	358	0	ENST00000355112.3:c.2692A>T	p.Arg898Trp	p.R898W	ENST00000355112	NM_000057.2	898	Agg/Tgg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67670713	67670713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	15	361	0	ENST00000264010.4:c.1958G>T	p.Gly653Val	p.G653V	ENST00000264010	NM_006565.3	653	gGa/gTa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	158	322	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	72	119	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	142	259	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	103	252	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	120	256	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43814578	43814578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	179	396	3	ENST00000372470.3:c.1373G>T	p.Arg458Leu	p.R458L	ENST00000372470	NM_005373.2	458	cGt/cTt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249026	55249026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	104	276	2	ENST00000275493.2:c.2324G>A	p.Cys775Tyr	p.C775Y	ENST00000275493	NM_005228.3	775	tGc/tAc					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77047294	77047294	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	152	317	0	ENST00000356341.3:c.1250A>T	p.Glu417Val	p.E417V	ENST00000356341	NM_002576.4	417	gAg/gTg					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610490	81610490	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	169	328	0	ENST00000298171.2:c.2088T>A	p.Phe696Leu	p.F696L	ENST00000298171	NM_000369.2	696	ttT/ttA					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584749	48584752	+	frameshift_variant	Frame_Shift_Del	DEL	ACAC	ACAC	-			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	159	287	0	ENST00000342988.3:c.829_832del	p.Thr277LeufsTer58	p.T277Lfs*58	ENST00000342988	NM_005359.5	276	tACACa/ta					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50906409	50906418	+	frameshift_variant	Frame_Shift_Del	DEL	TGCGGCCCTG	TGCGGCCCTG	GGGGGCCTT			P-0003923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	187	510	0	ENST00000440232.2:c.1070_1079delinsGGGGGCCTT	p.Leu357ArgfsTer36	p.L357Rfs*36	ENST00000440232	NM_002691.3	357	cTGCGGCCCTGt/cGGGGGCCTTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	295	643	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61149590	61149590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	36	353	0	ENST00000295025.8:c.1780G>T	p.Asp594Tyr	p.D594Y	ENST00000295025	NM_002908.2	594	Gat/Tat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	435	368	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	355	477	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98209721	98209721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	62	117	0	ENST00000331920.6:c.3817G>A	p.Glu1273Lys	p.E1273K	ENST00000331920	NM_000264.3	1273	Gaa/Aaa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108175528	108175528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	327	282	0	ENST00000278616.4:c.5623C>T	p.Arg1875Ter	p.R1875*	ENST00000278616	NM_000051.3	1875	Cga/Tga					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121434070	121434070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			620	153	413	1	ENST00000257555.6:c.961C>T	p.Arg321Cys	p.R321C	ENST00000257555		321	Cgc/Tgc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42793513	42793513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000526-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	133	288	0	ENST00000575354.2:c.1315G>A	p.Glu439Lys	p.E439K	ENST00000575354	NM_015125.3	439	Gag/Aag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	16	278	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001510-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	125	323	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164711	47164711	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201984344		P-0001510-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	236	413	0	ENST00000409792.3:c.1415G>A	p.Arg472His	p.R472H	ENST00000409792	NM_014159.6	472	cGt/cAt					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128851937	128851937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001510-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	70	432	0	ENST00000249373.3:c.2009G>A	p.Gly670Asp	p.G670D	ENST00000249373	NM_005631.4	670	gGc/gAc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391377	139391377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001510-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	137	406	0	ENST00000277541.6:c.6814C>T	p.Arg2272Cys	p.R2272C	ENST00000277541	NM_017617.3	2272	Cgt/Tgt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141426	11141426	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11537676		P-0001510-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	174	497	0	ENST00000344626.4:c.3403C>T	p.Arg1135Trp	p.R1135W	ENST00000344626	NM_003072.3	1135	Cgg/Tgg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29455299	29455299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	54	193	0	ENST00000389048.3:c.2503C>T	p.Pro835Ser	p.P835S	ENST00000389048	NM_004304.4	835	Ccg/Tcg					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128845620	128845620	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	46	193	0	ENST00000249373.3:c.917C>A	p.Pro306His	p.P306H	ENST00000249373	NM_005631.4	306	cCc/cAc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	35	215	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971003	21971003	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	35	215	0	ENST00000304494.5:c.355G>T	p.Glu119Ter	p.E119*	ENST00000304494	NM_000077.4	119	Gag/Tag					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87325644	87325644	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	88	305	0	ENST00000277120.3:c.521T>C	p.Leu174Ser	p.L174S	ENST00000277120		174	tTg/tCg					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104389868	104389868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	84	310	0	ENST00000369902.3:c.1411G>T	p.Val471Phe	p.V471F	ENST00000369902	NM_016169.3	471	Gtc/Ttc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48919323	48919323	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	56	172	0	ENST00000267163.4:c.488G>T	p.Ser163Ile	p.S163I	ENST00000267163	NM_000321.2	163	aGc/aTc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2111998	2111998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	59	201	0	ENST00000219476.3:c.1246G>T	p.Asp416Tyr	p.D416Y	ENST00000219476	NM_000548.3	416	Gac/Tac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	71	176	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11097084	11097084	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	122	335	0	ENST00000344626.4:c.579del	p.Gln194SerfsTer109	p.Q194Sfs*109	ENST00000344626	NM_003072.3	192	aGg/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	161	313	1	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	37015109	37015109	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	205	426	0	ENST00000358127.4:c.295A>T	p.Ile99Phe	p.I99F	ENST00000358127	NM_001280556.1	99	Atc/Ttc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	354	240	1	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37657562	37657562	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	762	376	0	ENST00000447079.4:c.2479G>T	p.Gly827Cys	p.G827C	ENST00000447079	NM_015083.1	827	Ggt/Tgt					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158549	26158554	+	inframe_deletion	In_Frame_Del	DEL	CCGACA	CCGACA	-			P-0004107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	173	211	0	ENST00000289316.2:c.155_160del	p.Asp52_Thr53del	p.D52_T53del	ENST00000289316	NM_138720.2	51	cCCGACAcc/ccc					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870953	12870953	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	53	284	0	ENST00000228872.4:c.180G>C	p.Trp60Cys	p.W60C	ENST00000228872	NM_004064.3	60	tgG/tgC					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176637999	176637999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000417-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	60	238	0	ENST00000439151.2:c.2599C>T	p.Leu867Phe	p.L867F	ENST00000439151	NM_022455.4	867	Ctc/Ttc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151873789	151873789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000417-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	50	258	0	ENST00000262189.6:c.8749G>T	p.Val2917Phe	p.V2917F	ENST00000262189	NM_170606.2	2917	Gtt/Ttt					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47430840	47430840	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000417-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	53	511	0	ENST00000377045.4:c.1805C>A	p.Ala602Asp	p.A602D	ENST00000377045	NM_001654.4	602	gCc/gAc					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66511676	66511676	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000417-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			343	109	147	0	ENST00000358598.2:c.138delC	p.Met47TrpfsTer82	p.M47Wfs*82	ENST00000358598	NM_212471.2	46	Ccc/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			56	135	355	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	188	319	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108200978	108200978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	79	291	0	ENST00000278616.4:c.7345G>A	p.Glu2449Lys	p.E2449K	ENST00000278616	NM_000051.3	2449	Gaa/Aaa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187517966	187517966	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	205	335	2	ENST00000441802.2:c.12728C>G	p.Ser4243Ter	p.S4243*	ENST00000441802	NM_005245.3	4243	tCa/tGa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187541457	187541457	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	150	443	0	ENST00000441802.2:c.6283G>T	p.Glu2095Ter	p.E2095*	ENST00000441802	NM_005245.3	2095	Gag/Tag					NEWRECORD																																																																									
PNRC1	0	MSKCC	GRCh37	6	89791020	89791020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			63	41	21	0	ENST00000336032.3:c.407G>A	p.Gly136Glu	p.G136E	ENST00000336032	NM_006813.2	136	gGa/gAa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29657472	29657472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001672-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			45	78	330	0	ENST00000358273.4:c.5768C>T	p.Thr1923Met	p.T1923M	ENST00000358273	NM_001042492.2	1923	aCg/aTg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	74	105	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56183340	56183340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	128	143	0	ENST00000399503.3:c.4250C>T	p.Ala1417Val	p.A1417V	ENST00000399503	NM_005921.1	1417	gCa/gTa					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56770018	56770018	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201523760		P-0001473-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	29	292	0	ENST00000337432.4:c.14C>T	p.Thr5Met	p.T5M	ENST00000337432	NM_058216.2	5	aCg/aTg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48942685	48942685	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	399	466	0	ENST00000267163.4:c.1072C>T	p.Arg358Ter	p.R358*	ENST00000267163	NM_000321.2	358	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	171	377	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	78	292	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576919	7576919	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	38	318	0	ENST00000269305.4:c.927delC	p.Asn310ThrfsTer35	p.N310Tfs*35	ENST00000269305	NM_001126112.2	309	ccC/cc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	24	288	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26029153	26029153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	113	402	0	ENST00000435504.4:c.197G>T	p.Gly66Val	p.G66V	ENST00000435504		66	gGt/gTt					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41750471	41750471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	44	301	0	ENST00000226382.2:c.157G>T	p.Ala53Ser	p.A53S	ENST00000226382	NM_003924.3	53	Gcc/Tcc					NEWRECORD																																																																									
FAM175A	0	MSKCC	GRCh37	4	84391508	84391508	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	17	156	0	ENST00000321945.7:c.324G>C	p.Gln108His	p.Q108H	ENST00000321945	NM_139076.2	108	caG/caC					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176637292	176637292	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	40	221	0	ENST00000439151.2:c.1892A>T	p.Lys631Met	p.K631M	ENST00000439151	NM_022455.4	631	aAg/aTg					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43604539	43604539	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs142338976		P-0001454-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	88	342	0	ENST00000355710.3:c.1124T>A	p.Leu375Gln	p.L375Q	ENST00000355710	NM_020975.4	375	cTg/cAg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593602	55593616	+	protein_altering_variant	In_Frame_Del	DEL	GTGGAAGGTTGTTGA	GTGGAAGGTTGTTGA	ACCTTC			P-0002525-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			343	210	451	0	ENST00000288135.5:c.1668_1682delinsACCTTC	p.Trp557_Glu561delinsProSer	p.W557_E561delinsPS	ENST00000288135	NM_000222.2	556	caGTGGAAGGTTGTTGAg/caACCTTCg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023616	27023616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	54	192	0	ENST00000324856.7:c.722C>T	p.Ser241Phe	p.S241F	ENST00000324856	NM_006015.4	241	tCc/tTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	69	351	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000520-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	165	380	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55972104	55972104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000520-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	174	441	0	ENST00000263923.4:c.1540G>A	p.Val514Ile	p.V514I	ENST00000263923	NM_002253.2	514	Gta/Ata					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000520-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	150	448	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120232	70120232	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000520-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	650	804	0	ENST00000245479.2:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000245479	NM_000346.3	412	Cag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175248	112175249	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0000520-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			349	95	329	0	ENST00000257430.4:c.3959_3960delTG	p.Val1320GlufsTer11	p.V1320Efs*11	ENST00000257430	NM_000038.5	1319	ccTGtg/cctg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	259	369	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729636	41729636	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	281	520	0	ENST00000242208.4:c.893G>A	p.Arg298Gln	p.R298Q	ENST00000242208	NM_002192.2	298	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577062	7577062	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	272	428	0	ENST00000269305.4:c.876delA	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	292	aaA/aa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175770	112175773	+	frameshift_variant	Frame_Shift_Del	DEL	GGAA	GGAA	-			P-0004549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	151	293	0	ENST00000257430.4:c.4479_4482del	p.Glu1494ValfsTer12	p.E1494Vfs*12	ENST00000257430	NM_000038.5	1493	acGGAA/ac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002544-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	50	345	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0002544-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	12	364	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112269	115112270	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0002544-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	17	63	0	ENST00000257566.3:c.1470_1471delinsTT	p.Ala491Ser	p.A491S	ENST00000257566	NM_016569.3	490	gcCGcg/gcTTcg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9928013	9928013	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002544-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			311	69	380	0	ENST00000330684.3:c.1726T>A	p.Phe576Ile	p.F576I	ENST00000330684	NM_001134407.1	576	Ttt/Att					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002743-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			783	312	614	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002743-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	115	350	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339518	116339518	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002743-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			769	100	517	0	ENST00000397752.3:c.380A>G	p.Asp127Gly	p.D127G	ENST00000397752	NM_000245.2	127	gAt/gGt					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	420101	420101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002743-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1253	122	709	0	ENST00000399788.2:c.3166C>T	p.Arg1056Trp	p.R1056W	ENST00000399788	NM_001042603.1	1056	Cgg/Tgg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117790	70117790	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002743-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	93	621	0	ENST00000245479.2:c.258G>A	p.Trp86Ter	p.W86*	ENST00000245479	NM_000346.3	86	tgG/tgA					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001781-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			78	36	601	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13935606	13935606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001781-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	155	575	0	ENST00000405192.2:c.1250G>A	p.Arg417His	p.R417H	ENST00000405192	NM_001163147.1	417	cGt/cAt					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80343503	80343503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001781-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	17	574	0	ENST00000286548.4:c.816C>A	p.Phe272Leu	p.F272L	ENST00000286548	NM_002072.3	272	ttC/ttA					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31021149	31021149	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001781-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	126	624	0	ENST00000375687.4:c.1148A>G	p.Lys383Arg	p.K383R	ENST00000375687	NM_015338.5	383	aAa/aGa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001781-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	210	717	0	ENST00000374080.3:c.130G>T	p.Gly44Cys	p.G44C	ENST00000374080		44	Ggt/Tgt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938569	76938569	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001781-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			58	86	745	0	ENST00000373344.5:c.2179C>T	p.Gln727Ter	p.Q727*	ENST00000373344	NM_000489.3	727	Caa/Taa					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9780013	9780013	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	62	351	0	ENST00000377346.4:c.1277T>C	p.Phe426Ser	p.F426S	ENST00000377346	NM_005026.3	426	tTt/tCt					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43804956	43804956	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	152	332	0	ENST00000372470.3:c.406C>A	p.Pro136Thr	p.P136T	ENST00000372470	NM_005373.2	136	Ccc/Acc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52613133	52613133	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	220	368	0	ENST00000394830.3:c.3395G>A	p.Trp1132Ter	p.W1132*	ENST00000394830	NM_018313.4	1132	tGg/tAg					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97897777	97897779	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-	rs3831244		P-0003117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	30	253	0	ENST00000289081.3:c.692_694del	p.Lys231del	p.K231del	ENST00000289081	NM_000136.2	231	aAGAtt/att					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441471	52441471	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	225	350	0	ENST00000460680.1:c.381del	p.Gly128AspfsTer59	p.G128Dfs*59	ENST00000460680	NM_004656.3	127	aaA/aa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	22	356	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0000791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	8	246	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152132780	152132780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	32	465	0	ENST00000262189.6:c.92C>T	p.Ala31Val	p.A31V	ENST00000262189	NM_170606.2	31	gCc/gTc					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69233121	69233121	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000791-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	72	230	0	ENST00000462284.1:c.986G>C	p.Trp329Ser	p.W329S	ENST00000462284	NM_002392.5	329	tGg/tCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	107	564	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40979368	40979368	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0000610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	17	158	0	ENST00000373198.4:c.1765C>G	p.Pro589Ala	p.P589A	ENST00000373198	NM_133170.3	589	Cca/Gca					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112179354	112179354	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000610-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	26	460	0	ENST00000257430.4:c.8066delA	p.Lys2689ArgfsTer34	p.K2689Rfs*34	ENST00000257430	NM_000038.5	2688	gAa/ga					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207102	1207102	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	58	380	0	ENST00000326873.7:c.190A>T	p.Lys64Ter	p.K64*	ENST00000326873	NM_000455.4	64	Aag/Tag					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120480549	120480549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	73	433	0	ENST00000256646.2:c.3268C>T	p.Pro1090Ser	p.P1090S	ENST00000256646	NM_024408.3	1090	Cca/Tca					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215617190	215617190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	80	311	0	ENST00000260947.4:c.1658C>T	p.Ser553Leu	p.S553L	ENST00000260947	NM_000465.2	553	tCa/tTa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55561686	55561686	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	36	192	0	ENST00000288135.5:c.76C>T	p.Gln26Ter	p.Q26*	ENST00000288135	NM_000222.2	26	Caa/Taa					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102098222	102098222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	40	293	0	ENST00000282441.5:c.1186G>A	p.Glu396Lys	p.E396K	ENST00000282441	NM_001130145.2	396	Gag/Aag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828812	72828812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	121	694	0	ENST00000268489.5:c.7769C>G	p.Ser2590Cys	p.S2590C	ENST00000268489	NM_006885.3	2590	tCt/tGt					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30302714	30302714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	20	147	0	ENST00000322652.5:c.805G>A	p.Glu269Lys	p.E269K	ENST00000322652	NM_015355.2	269	Gaa/Aaa					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2202733	2202733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	60	528	0	ENST00000398665.3:c.742G>A	p.Glu248Lys	p.E248K	ENST00000398665	NM_032482.2	248	Gag/Aag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600420	10600420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	52	488	0	ENST00000171111.5:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000171111	NM_203500.1	479	Gac/Tac					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11105605	11105605	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	44	344	0	ENST00000344626.4:c.1521C>G	p.Tyr507Ter	p.Y507*	ENST00000344626	NM_003072.3	507	taC/taG					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42791735	42791735	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	51	401	0	ENST00000575354.2:c.621C>A	p.Phe207Leu	p.F207L	ENST00000575354	NM_015125.3	207	ttC/ttA					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039420	47039422	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	45	261	0	ENST00000329236.7:c.812_814del	p.Ile271_Gln272delinsLys	p.I271_Q272delinsK	ENST00000329236	NM_001204466.1	271	aTCCag/aag					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101904958	101904981	+	inframe_deletion	In_Frame_Del	DEL	CTTCACATGGAGATTGTTGGTACC	CTTCACATGGAGATTGTTGGTACC	-			P-0004658-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	59	306	0	ENST00000374994.4:c.947_970del	p.Leu316_Thr323del	p.L316_T323del	ENST00000374994	NM_004612.2	316	CTTCACATGGAGATTGTTGGTACC/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	40	181	1	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56363666	56363666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	33	340	2	ENST00000348428.3:c.445C>T	p.Arg149Trp	p.R149W	ENST00000348428	NM_006785.3	149	Cgg/Tgg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2108780	2108780	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	28	295	1	ENST00000219476.3:c.881G>T	p.Gly294Val	p.G294V	ENST00000219476	NM_000548.3	294	gGa/gTa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2111969	2111969	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	16	210	0	ENST00000219476.3:c.1217G>C	p.Arg406Thr	p.R406T	ENST00000219476	NM_000548.3	406	aGa/aCa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49047527	49047527	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0001084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	92	308	0	ENST00000267163.4:c.2520+1G>A		p.X840_splice	ENST00000267163	NM_000321.2	840						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0001084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	125	407	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602493	10602493	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	140	347	0	ENST00000171111.5:c.1085G>C	p.Arg362Pro	p.R362P	ENST00000171111	NM_203500.1	362	cGg/cCg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27092724	27092724	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001084-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	124	286	0	ENST00000324856.7:c.2748delC	p.Asn917IlefsTer2	p.N917Ifs*2	ENST00000324856	NM_006015.4	915	taC/ta					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	109	376	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000221-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			686	369	432	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267489	198267489	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	120	319	0	ENST00000335508.6:c.1868A>G	p.Tyr623Cys	p.Y623C	ENST00000335508	NM_012433.2	623	tAt/tGt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16237793	16237793	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	43	232	0	ENST00000375759.3:c.1241del	p.Pro414GlnfsTer16	p.P414Qfs*16	ENST00000375759	NM_015001.2	414	Cca/ca					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437302	52437302	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	191	399	0	ENST00000460680.1:c.1742del	p.Gly581ValfsTer36	p.G581Vfs*36	ENST00000460680	NM_004656.3	581	gGt/gt					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0004173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	57	307	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692961	89692961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	55	191	0	ENST00000371953.3:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000371953	NM_000314.4	149	Caa/Taa					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	42	260	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56155653	56155653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	43	196	0	ENST00000399503.3:c.745C>G	p.Arg249Gly	p.R249G	ENST00000399503	NM_005921.1	249	Cgc/Ggc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68846086	68846086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	35	340	0	ENST00000261769.5:c.1057G>A	p.Glu353Lys	p.E353K	ENST00000261769	NM_004360.3	353	Gag/Aag					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591145	67591154	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TACTTGATGT	TACTTGATGT	-			P-0004173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	42	204	0	ENST00000274335.5:c.1738_1745+2delTACTTGATGT		p.X580_splice	ENST00000274335		580						NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692951	89692953	+	frameshift_variant	Frame_Shift_Del	DEL	TTT	TTT	A			P-0004173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	42	204	0	ENST00000371953.3:c.435_437delinsA	p.Phe145LeufsTer34	p.F145Lfs*34	ENST00000371953	NM_000314.4	145	ttTTTa/ttAa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	91	298	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248055	59248055	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			214	127	181	0	ENST00000371222.2:c.688C>T	p.Gln230Ter	p.Q230*	ENST00000371222	NM_002228.3	230	Cag/Tag					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128046371	128046371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	29	297	0	ENST00000285398.2:c.892C>T	p.Arg298Trp	p.R298W	ENST00000285398	NM_000122.1	298	Cgg/Tgg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66535384	66535384	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	78	266	0	ENST00000273854.3:c.77C>T	p.Ala26Val	p.A26V	ENST00000273854	NM_004439.5	26	gCg/gTg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			370	93	311	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93606319	93606319	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	106	396	0	ENST00000375746.1:c.139T>A	p.Tyr47Asn	p.Y47N	ENST00000375746	NM_001174167.1	47	Tac/Aac					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	176	446	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36031268	36031268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000769-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			920	111	467	0	ENST00000358208.4:c.1387C>T	p.Arg463Trp	p.R463W	ENST00000358208		463	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	17	326	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0003662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	46	317	0	ENST00000257430.4:c.4127_4128delAT	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	31	396	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	180	189	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	167	205	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	73	163	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	115	256	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	354435	354435	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	106	348	0	ENST00000262320.3:c.1123T>C	p.Tyr375His	p.Y375H	ENST00000262320	NM_003502.3	375	Tac/Cac					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63533093	63533093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	152	355	0	ENST00000307078.5:c.1801G>A	p.Gly601Ser	p.G601S	ENST00000307078	NM_004655.3	601	Ggc/Agc					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117870	70117870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	131	193	0	ENST00000245479.2:c.338T>C	p.Met113Thr	p.M113T	ENST00000245479	NM_000346.3	113	aTg/aCg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	196	304	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0001389-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	144	785	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0001389-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	182	518	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0001389-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	31	160	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56438243	56438243	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001389-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			468	116	443	0	ENST00000407977.2:c.750del	p.Ser251AlafsTer168	p.S251Afs*168	ENST00000407977		250	gcC/gc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	410	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	273	558	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	168	308	1	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48649679	48649679	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150572851		P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	246	581	1	ENST00000376670.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000376670	NM_002049.3	55	Gct/Act					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175630	112175630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	146	551	0	ENST00000257430.4:c.4339C>T	p.Gln1447Ter	p.Q1447*	ENST00000257430	NM_000038.5	1447	Caa/Taa					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67655380	67655380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	123	462	1	ENST00000264010.4:c.1243C>T	p.Arg415Trp	p.R415W	ENST00000264010	NM_006565.3	415	Cgg/Tgg					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39775532	39775532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	182	347	0	ENST00000288319.7:c.488T>C	p.Ile163Thr	p.I163T	ENST00000288319	NM_182918.3	163	aTc/aCc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105239862	105239862	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000047-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	25	976	0	ENST00000349310.3:c.758A>G	p.Tyr253Cys	p.Y253C	ENST00000349310	NM_001014432.1	253	tAt/tGt					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52443574	52443592	+	frameshift_variant	Frame_Shift_Del	DEL	GACATTTGCTCTGAAGGTC	GACATTTGCTCTGAAGGTC	-			P-0000047-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	201	809	0	ENST00000460680.1:c.100_118delGACCTTCAGAGCAAATGTC	p.Asp34ArgfsTer32	p.D34Rfs*32	ENST00000460680	NM_004656.3	34	GACCTTCAGAGCAAATGTCag/ag					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86659245	86659245	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	209	373	0	ENST00000274376.6:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000274376	NM_002890.2	512	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578467	7578467	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	216	286	0	ENST00000269305.4:c.463A>C	p.Thr155Pro	p.T155P	ENST00000269305	NM_001126112.2	155	Acc/Ccc					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26959434	26959434	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	155	454	0	ENST00000381527.3:c.601G>T	p.Ala201Ser	p.A201S	ENST00000381527	NM_001260.1	201	Gcc/Tcc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72830703	72830703	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	221	656	1	ENST00000268489.5:c.5878T>A	p.Tyr1960Asn	p.Y1960N	ENST00000268489	NM_006885.3	1960	Tat/Aat					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10247935	10247935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	88	161	0	ENST00000340748.4:c.4267G>T	p.Ala1423Ser	p.A1423S	ENST00000340748		1423	Gcc/Tcc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098405	11098405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	181	256	0	ENST00000344626.4:c.923C>T	p.Thr308Met	p.T308M	ENST00000344626	NM_003072.3	308	aCg/aTg					NEWRECORD																																																																									
MEF2B	0	MSKCC	GRCh37	19	19258625	19258625	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	286	347	0	ENST00000162023.5:c.275G>T	p.Gly92Val	p.G92V	ENST00000162023		92	gGc/gTc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0000445-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	161	379	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46739111	46739111	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000445-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			860	251	608	0	ENST00000371975.4:c.1460C>G	p.Ser487Cys	p.S487C	ENST00000371975	NM_003579.3	487	tCt/tGt					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	264	405	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087360	27087360	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	32	315	0	ENST00000324856.7:c.1934C>G	p.Ser645Ter	p.S645*	ENST00000324856	NM_006015.4	645	tCa/tGa					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78923342	78923342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	62	215	0	ENST00000306801.3:c.3365C>T	p.Thr1122Met	p.T1122M	ENST00000306801	NM_020761.2	1122	aCg/aTg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023576	27023604	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTACGCGCTGAGCTCCCCGAGAGGTGG	GCCTACGCGCTGAGCTCCCCGAGAGGTGG	A			P-0003880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	130	303	0	ENST00000324856.7:c.682_710delinsA	p.Ala228ThrfsTer126	p.A228Tfs*126	ENST00000324856	NM_006015.4	228	GCCTACGCGCTGAGCTCCCCGAGAGGTGGc/Ac					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593586	55593591	+	inframe_deletion	In_Frame_Del	DEL	CCATGT	CCATGT	-			P-0004235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	253	297	0	ENST00000288135.5:c.1652_1657del	p.Pro551_Tyr553delinsHis	p.P551_Y553delinsH	ENST00000288135	NM_000222.2	551	cCCATGTat/cat					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50920474	50920474	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	83	235	0	ENST00000440232.2:c.3166A>G	p.Thr1056Ala	p.T1056A	ENST00000440232	NM_002691.3	1056	Acg/Gcg					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36171680	36171682	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0003226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	54	197	0	ENST00000300305.3:c.883_885del	p.Ser295del	p.S295del	ENST00000300305		295	TCT/-					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175934	112175941	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAAGAG	ACCAAGAG	-			P-0003226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	112	196	0	ENST00000257430.4:c.4644_4651del	p.Asn1548LysfsTer8	p.N1548Kfs*8	ENST00000257430	NM_000038.5	1548	aACCAAGAG/a					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	41	275	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939992	76939992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	58	249	0	ENST00000373344.5:c.756G>T	p.Glu252Asp	p.E252D	ENST00000373344	NM_000489.3	252	gaG/gaT					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0000725-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	306	304	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0003624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	29	216	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	39	215	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	482	628	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50455123	50455123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	246	458	0	ENST00000331340.3:c.670C>T	p.His224Tyr	p.H224Y	ENST00000331340	NM_006060.4	224	Cac/Tac					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20156728	20156728	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	413	792	0	ENST00000379607.5:c.29A>C	p.Lys10Thr	p.K10T	ENST00000379607	NM_001412.3	10	aAa/aCa					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			306	118	461	3	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0003011-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			584	41	311	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1293457	1293457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003011-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	115	371	0	ENST00000310581.5:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000310581	NM_198253.2	515	cGg/cAg					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39911539	39911539	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003011-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	250	299	0	ENST00000378444.4:c.5091T>A	p.Phe1697Leu	p.F1697L	ENST00000378444	NM_001123385.1	1697	ttT/ttA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578505	7578505	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003011-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			442	173	369	0	ENST00000269305.4:c.425delC	p.Pro142LeufsTer28	p.P142Lfs*28	ENST00000269305	NM_001126112.2	142	cCt/ct					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100069	27100069	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0001933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	23	193	0	ENST00000324856.7:c.3867-2A>T		p.X1289_splice	ENST00000324856	NM_006015.4	1289						NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439880	52439880	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001933-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	18	206	0	ENST00000460680.1:c.832G>T	p.Glu278Ter	p.E278*	ENST00000460680	NM_004656.3	278	Gag/Tag					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26911760	26911760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	146	445	1	ENST00000381527.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000381527	NM_001260.1	62	tCg/tTg					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225368476	225368476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	50	478	0	ENST00000264414.4:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000264414	NM_003590.4	424	Gaa/Aaa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139401414	139401414	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	14	132	0	ENST00000277541.6:c.3655G>T	p.Glu1219Ter	p.E1219*	ENST00000277541	NM_017617.3	1219	Gag/Tag					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114724324	114724324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	97	800	0	ENST00000543371.1:c.391C>T	p.Gln131Ter	p.Q131*	ENST00000543371	NM_001198531.1	131	Cag/Tag					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133220464	133220464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	65	384	0	ENST00000320574.5:c.4249G>A	p.Glu1417Lys	p.E1417K	ENST00000320574	NM_006231.2	1417	Gag/Aag					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78923339	78923339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	18	300	0	ENST00000306801.3:c.3362C>T	p.Thr1121Met	p.T1121M	ENST00000306801	NM_020761.2	1121	aCg/aTg					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426683	47426683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	43	574	0	ENST00000377045.4:c.928G>T	p.Val310Leu	p.V310L	ENST00000377045	NM_001654.4	310	Gtg/Ttg					NEWRECORD																																																																									
H3F3A	0	MSKCC	GRCh37	1	226253409	226253411	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0003848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	19	114	0	ENST00000366813.1:c.183_185del	p.Leu62del	p.L62del	ENST00000366813		61	CTT/-					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162496	47162496	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	123	512	0	ENST00000409792.3:c.3630del	p.Asp1211MetfsTer25	p.D1211Mfs*25	ENST00000409792	NM_014159.6	1210	gaA/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579508	7579508	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	49	339	0	ENST00000269305.4:c.179delC	p.Pro60GlnfsTer63	p.P60Qfs*63	ENST00000269305	NM_001126112.2	60	cCa/ca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			418	792	455	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181431011	181431011	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			879	221	356	0	ENST00000325404.1:c.863C>G	p.Ala288Gly	p.A288G	ENST00000325404	NM_003106.3	288	gCc/gGc					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41725338	41725338	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	52	382	0	ENST00000301178.4:c.41C>G	p.Ala14Gly	p.A14G	ENST00000301178	NM_021913.4	14	gCc/gGc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643725	52643725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	82	251	0	ENST00000394830.3:c.2171T>C	p.Met724Thr	p.M724T	ENST00000394830	NM_018313.4	724	aTg/aCg					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50919902	50919902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	98	460	0	ENST00000440232.2:c.2989G>A	p.Gly997Ser	p.G997S	ENST00000440232	NM_002691.3	997	Ggc/Agc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53243884	53243884	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	112	280	0	ENST00000375401.3:c.1109del	p.Lys370SerfsTer60	p.K370Sfs*60	ENST00000375401	NM_004187.3	370	aAg/ag					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188193	10188200	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATAGGTC	GATAGGTC	T			P-0003568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	89	313	0	ENST00000256474.2:c.341-5_343delinsT		p.X114_splice	ENST00000256474	NM_000551.3	114						NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	32	271	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			536	77	335	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002491-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	74	272	0	ENST00000269305.4:c.80delC	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct					NEWRECORD																																																																									
MYCN	4613	MSKCC	GRCh37	2	16085972	16085972	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs998174759		P-0002939-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	153	519	1	ENST00000281043.3:c.1148G>A	p.Arg383His	p.R383H	ENST00000281043	NM_005378.4	383	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001887-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	196	237	0	ENST00000269305.4:c.406C>G	p.Gln136Glu	p.Q136E	ENST00000269305	NM_001126112.2	136	Caa/Gaa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11300537	11300537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			991	175	436	0	ENST00000361445.4:c.1609G>A	p.Asp537Asn	p.D537N	ENST00000361445	NM_004958.3	537	Gat/Aat					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66213872	66213872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	215	514	0	ENST00000273854.3:c.2558G>A	p.Arg853Gln	p.R853Q	ENST00000273854	NM_004439.5	853	cGa/cAa					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294327	1294327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1161	94	147	0	ENST00000310581.5:c.674G>A	p.Gly225Glu	p.G225E	ENST00000310581	NM_198253.2	225	gGg/gAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177049	112177049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			891	57	374	0	ENST00000257430.4:c.5758C>T	p.Arg1920Ter	p.R1920*	ENST00000257430	NM_000038.5	1920	Cga/Tga					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			137	2072	226	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110251451	110251451	+	start_lost,splice_region_variant	Translation_Start_Site	SNP	C	C	T			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	170	401	0	ENST00000374672.4:c.3G>A	p.Met1?	p.M1?	ENST00000374672	NM_004235.4	1	atG/atA					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118368773	118368773	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	88	159	0	ENST00000534358.1:c.5787C>G	p.Ile1929Met	p.I1929M	ENST00000534358	NM_005933.3	1929	atC/atG					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95560263	95560263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001037-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	104	199	0	ENST00000343455.3:c.5326C>T	p.Gln1776Ter	p.Q1776*	ENST00000343455	NM_177438.2	1776	Cag/Tag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002591-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			469	296	289	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38287415	38287415	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002591-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			475	357	231	0	ENST00000425967.3:c.242G>A	p.Gly81Asp	p.G81D	ENST00000425967	NM_001174067.1	81	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7572986	7572986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002591-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			163	101	245	0	ENST00000269305.4:c.1123C>T	p.Gln375Ter	p.Q375*	ENST00000269305	NM_001126112.2	375	Cag/Tag					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68835627	68835627	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002591-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			240	405	342	0	ENST00000261769.5:c.220del	p.Arg74AspfsTer9	p.R74Dfs*9	ENST00000261769	NM_004360.3	73	aCc/ac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	110	522	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	16	221	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0000744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	34	441	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69928425	69928425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	13	198	0	ENST00000352241.4:c.245C>T	p.Ala82Val	p.A82V	ENST00000352241	NM_198159.2	82	gCg/gTg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112136980	112136980	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	31	246	0	ENST00000257430.4:c.734C>A	p.Ser245Ter	p.S245*	ENST00000257430	NM_000038.5	245	tCa/tAa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8733795	8733795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138127948		P-0000744-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	55	367	0	ENST00000356435.5:c.49C>T	p.Arg17Cys	p.R17C	ENST00000356435		17	Cgc/Tgc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			12	241	222	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138453486	138453486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			195	53	241	0	ENST00000289153.2:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000289153	NM_006219.2	321	cGa/cAa					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46743775	46743775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			70	36	243	0	ENST00000371975.4:c.2065C>G	p.Gln689Glu	p.Q689E	ENST00000371975	NM_003579.3	689	Cag/Gag					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458033	120458033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			61	39	182	0	ENST00000256646.2:c.7312G>A	p.Asp2438Asn	p.D2438N	ENST00000256646	NM_024408.3	2438	Gat/Aat					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458315	120458315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	28	147	0	ENST00000256646.2:c.7030G>C	p.Glu2344Gln	p.E2344Q	ENST00000256646	NM_024408.3	2344	Gaa/Caa					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458519	120458519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			43	31	180	0	ENST00000256646.2:c.6826G>A	p.Glu2276Lys	p.E2276K	ENST00000256646	NM_024408.3	2276	Gag/Aag					NEWRECORD																																																																									
RIT1	0	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	38	249	0	ENST00000368323.3:c.270G>C	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atC					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156844182	156844182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	32	233	0	ENST00000524377.1:c.1185C>G	p.Phe395Leu	p.F395L	ENST00000524377	NM_002529.3	395	ttC/ttG					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226549764	226549764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	35	190	0	ENST00000366794.5:c.2869G>A	p.Asp957Asn	p.D957N	ENST00000366794	NM_001618.3	957	Gat/Aat					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30715667	30715667	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			8	39	187	0	ENST00000359013.4:c.1400T>A	p.Phe467Tyr	p.F467Y	ENST00000359013	NM_001024847.2	467	tTc/tAc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142215931	142215931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	49	206	0	ENST00000350721.4:c.5662G>A	p.Glu1888Lys	p.E1888K	ENST00000350721	NM_001184.3	1888	Gaa/Aaa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55561872	55561872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	32	241	0	ENST00000288135.5:c.262G>A	p.Glu88Lys	p.E88K	ENST00000288135	NM_000222.2	88	Gaa/Aaa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106193871	106193871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	57	224	0	ENST00000380013.4:c.4333C>A	p.Gln1445Lys	p.Q1445K	ENST00000380013	NM_001127208.2	1445	Cag/Aag					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70404458	70404458	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	36	216	0	ENST00000373644.4:c.1972G>C	p.Asp658His	p.D658H	ENST00000373644	NM_030625.2	658	Gat/Cat					NEWRECORD																																																																									
FGF19	0	MSKCC	GRCh37	11	69514089	69514089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	37	227	0	ENST00000294312.3:c.592G>C	p.Asp198His	p.D198H	ENST00000294312	NM_005117.2	198	Gac/Cac					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118343271	118343271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			49	13	233	0	ENST00000534358.1:c.1397C>G	p.Ser466Cys	p.S466C	ENST00000534358	NM_005933.3	466	tCt/tGt					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	420070	420070	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191475834		P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	58	316	0	ENST00000399788.2:c.3197C>T	p.Ser1066Phe	p.S1066F	ENST00000399788	NM_001042603.1	1066	tCt/tTt					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18446951	18446951	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	19	176	0	ENST00000266497.5:c.1034+2T>G		p.X345_splice	ENST00000266497		345						NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69218205	69218205	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	58	227	0	ENST00000462284.1:c.421C>G	p.Gln141Glu	p.Q141E	ENST00000462284	NM_002392.5	141	Caa/Gaa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133226002	133226002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			62	27	254	0	ENST00000320574.5:c.3895G>C	p.Glu1299Gln	p.E1299Q	ENST00000320574	NM_006231.2	1299	Gag/Cag					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28602354	28602354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	30	291	0	ENST00000241453.7:c.2014G>A	p.Glu672Lys	p.E672K	ENST00000241453	NM_004119.2	672	Gag/Aag					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28608053	28608053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			47	31	313	0	ENST00000241453.7:c.1913C>T	p.Ser638Leu	p.S638L	ENST00000241453	NM_004119.2	638	tCa/tTa					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110438153	110438153	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			15	16	98	0	ENST00000375856.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000375856	NM_003749.2	83	cGg/cAg					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105239245	105239245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			38	29	186	0	ENST00000349310.3:c.1142C>T	p.Ser381Leu	p.S381L	ENST00000349310	NM_001014432.1	381	tCa/tTa					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	396845	396845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	19	253	0	ENST00000262320.3:c.181C>G	p.Pro61Ala	p.P61A	ENST00000262320	NM_003502.3	61	Ccg/Gcg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916216	9916216	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			61	29	258	1	ENST00000330684.3:c.2073G>C	p.Glu691Asp	p.E691D	ENST00000330684	NM_001134407.1	691	gaG/gaC					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618395	37618395	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	50	196	0	ENST00000447079.4:c.71C>A	p.Ser24Ter	p.S24*	ENST00000447079	NM_015083.1	24	tCa/tAa					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41242963	41242963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	28	214	0	ENST00000357654.3:c.4183C>G	p.Gln1395Glu	p.Q1395E	ENST00000357654	NM_007294.3	1395	Cag/Gag					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	742933	742933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			69	51	280	0	ENST00000314574.4:c.1045G>A	p.Glu349Lys	p.E349K	ENST00000314574	NM_005433.3	349	Gaa/Aaa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11106991	11106991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			48	28	261	0	ENST00000344626.4:c.1696G>C	p.Glu566Gln	p.E566Q	ENST00000344626	NM_003072.3	566	Gag/Cag					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921627	39921627	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			36	33	238	0	ENST00000378444.4:c.4193G>C	p.Arg1398Thr	p.R1398T	ENST00000378444	NM_001123385.1	1398	aGa/aCa					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176562849	176562849	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002858-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			61	81	237	0	ENST00000439151.2:c.745del	p.Glu249LysfsTer12	p.E249Kfs*12	ENST00000439151	NM_022455.4	249	Gaa/aa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	1356	367	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	278	466	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41750437	41750437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	181	314	0	ENST00000226382.2:c.191C>T	p.Ser64Phe	p.S64F	ENST00000226382	NM_003924.3	64	tCc/tTc					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156845320	156845320	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	158	545	0	ENST00000524377.1:c.1363G>C	p.Val455Leu	p.V455L	ENST00000524377	NM_002529.3	455	Gtg/Ctg					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178097307	178097307	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	128	227	0	ENST00000397062.3:c.407C>G	p.Ser136Cys	p.S136C	ENST00000397062	NM_006164.4	136	tCt/tGt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108199889	108199889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	82	292	0	ENST00000278616.4:c.7231G>A	p.Glu2411Lys	p.E2411K	ENST00000278616	NM_000051.3	2411	Gaa/Aaa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108199922	108199922	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	69	261	0	ENST00000278616.4:c.7264G>C	p.Glu2422Gln	p.E2422Q	ENST00000278616	NM_000051.3	2422	Gag/Cag					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47040911	47040911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	182	200	0	ENST00000329236.7:c.1207G>T	p.Glu403Ter	p.E403*	ENST00000329236	NM_001204466.1	403	Gag/Tag					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781057	135781058	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0003444-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	303	640	0	ENST00000298552.3:c.1907_1908del	p.Glu636GlyfsTer51	p.E636Gfs*51	ENST00000298552	NM_001162426.1	636	gAG/g					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	411	401	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt					NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	339	239	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94066446	94066446	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	596	403	0	ENST00000369303.4:c.1313C>A	p.Thr438Asn	p.T438N	ENST00000369303	NM_004440.3	438	aCt/aAt					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118166597	118166597	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	137	137	0	ENST00000369448.3:c.1107C>A	p.Ser369Arg	p.S369R	ENST00000369448	NM_017709.3	369	agC/agA					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226576371	226576371	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	240	397	1	ENST00000366794.5:c.703G>T	p.Glu235Ter	p.E235*	ENST00000366794	NM_001618.3	235	Gaa/Taa					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243727024	243727024	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	258	206	0	ENST00000263826.5:c.946G>T	p.Glu316Ter	p.E316*	ENST00000263826	NM_005465.4	316	Gag/Tag					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29449859	29449859	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	407	383	0	ENST00000389048.3:c.2996C>A	p.Pro999His	p.P999H	ENST00000389048	NM_004304.4	999	cCt/cAt					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29519758	29519758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	261	256	0	ENST00000389048.3:c.1813G>C	p.Asp605His	p.D605H	ENST00000389048	NM_004304.4	605	Gac/Cac					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198281560	198281560	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	209	272	1	ENST00000335508.6:c.571C>T	p.Gln191Ter	p.Q191*	ENST00000335508	NM_012433.2	191	Cag/Tag					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212578260	212578260	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	530	334	0	ENST00000342788.4:c.997G>T	p.Ala333Ser	p.A333S	ENST00000342788	NM_005235.2	333	Gct/Tct					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242795126	242795126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	125	140	0	ENST00000334409.5:c.83C>A	p.Pro28Gln	p.P28Q	ENST00000334409	NM_005018.2	28	cCa/cAa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142231276	142231276	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	413	311	0	ENST00000350721.4:c.4678G>T	p.Asp1560Tyr	p.D1560Y	ENST00000350721	NM_001184.3	1560	Gat/Tat					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187447214	187447214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	130	191	0	ENST00000232014.4:c.979G>T	p.Gly327Cys	p.G327C	ENST00000232014	NM_001130845.1	327	Ggt/Tgt					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189604182	189604182	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	234	270	0	ENST00000264731.3:c.1350-1G>A		p.X450_splice	ENST00000264731	NM_003722.4	450						NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467476	66467476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	363	269	0	ENST00000273854.3:c.793C>G	p.His265Asp	p.H265D	ENST00000273854	NM_004439.5	265	Cat/Gat					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187510091	187510091	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	353	245	0	ENST00000441802.2:c.13422G>T	p.Leu4474Phe	p.L4474F	ENST00000441802	NM_005245.3	4474	ttG/ttT					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180047936	180047936	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	197	257	0	ENST00000261937.6:c.2239C>A	p.Leu747Met	p.L747M	ENST00000261937	NM_182925.4	747	Ctg/Atg					NEWRECORD																																																																									
HIST1H3G	0	MSKCC	GRCh37	6	26271309	26271309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	677	786	0	ENST00000305910.3:c.304G>T	p.Val102Leu	p.V102L	ENST00000305910	NM_003534.2	102	Gtg/Ttg					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27778179	27778179	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	760	825	3	ENST00000369163.2:c.328C>G	p.Leu110Val	p.L110V	ENST00000369163	NM_003536.2	110	Ctg/Gtg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93956509	93956509	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	535	403	2	ENST00000369303.4:c.2726+1G>T		p.X909_splice	ENST00000369303	NM_004440.3	909						NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150004745	150004745	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	347	233	2	ENST00000253339.5:c.1480A>G	p.Ile494Val	p.I494V	ENST00000253339		494	Att/Gtt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151860435	151860435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	526	307	0	ENST00000262189.6:c.10227G>C	p.Glu3409Asp	p.E3409D	ENST00000262189	NM_170606.2	3409	gaG/gaC					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759848	133759848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	219	253	0	ENST00000318560.5:c.2171A>G	p.His724Arg	p.H724R	ENST00000318560	NM_005157.4	724	cAt/cGt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100998680	100998680	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	714	521	2	ENST00000325455.5:c.1122C>A	p.Tyr374Ter	p.Y374*	ENST00000325455	NM_001202474.3	374	taC/taA					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108150312	108150312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	310	213	0	ENST00000278616.4:c.3379G>T	p.Ala1127Ser	p.A1127S	ENST00000278616	NM_000051.3	1127	Gct/Tct					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18534713	18534713	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	322	204	2	ENST00000266497.5:c.1771G>T	p.Gly591Trp	p.G591W	ENST00000266497		591	Ggg/Tgg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246315	46246315	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	430	263	0	ENST00000334344.6:c.4409C>A	p.Ser1470Ter	p.S1470*	ENST00000334344	NM_152641.2	1470	tCa/tAa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49415848	49415848	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	342	292	0	ENST00000301067.7:c.16499G>T	p.Arg5500Leu	p.R5500L	ENST00000301067	NM_003482.3	5500	cGg/cTg					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57861998	57861998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	387	420	0	ENST00000228682.2:c.1299G>T	p.Glu433Asp	p.E433D	ENST00000228682	NM_005269.2	433	gaG/gaT					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858348	9858348	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	187	200	0	ENST00000330684.3:c.3053T>A	p.Val1018Glu	p.V1018E	ENST00000330684	NM_001134407.1	1018	gTg/gAg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556073	29556073	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	348	187	0	ENST00000358273.4:c.2440A>T	p.Lys814Ter	p.K814*	ENST00000358273	NM_001042492.2	814	Aag/Tag					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39570424	39570424	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	338	168	0	ENST00000262039.4:c.620G>T	p.Ser207Ile	p.S207I	ENST00000262039	NM_002647.2	207	aGt/aTt					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2191227	2191227	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	215	258	0	ENST00000398665.3:c.481G>T	p.Asp161Tyr	p.D161Y	ENST00000398665	NM_032482.2	161	Gac/Tac					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36026137	36026137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	125	345	1	ENST00000358208.4:c.739G>T	p.Val247Leu	p.V247L	ENST00000358208		247	Gtg/Ttg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40864893	40864893	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	406	273	0	ENST00000373198.4:c.2375A>T	p.Asn792Ile	p.N792I	ENST00000373198	NM_133170.3	792	aAt/aTt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306757	41306757	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	220	180	0	ENST00000373198.4:c.902G>C	p.Gly301Ala	p.G301A	ENST00000373198	NM_133170.3	301	gGg/gCg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142242903	142242904	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0003562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	419	359	0	ENST00000350721.4:c.4083_4084delinsTT	p.Leu1361_Gly1362delinsPheTrp	p.L1361_G1362delinsFW	ENST00000350721	NM_001184.3	1361	ttGGgg/ttTTgg					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419938	152419938	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			975	55	449	0	ENST00000206249.3:c.1625A>G	p.Glu542Gly	p.E542G	ENST00000206249	NM_000125.3	542	gAg/gGg					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38966777	38966780	+	frameshift_variant	Frame_Shift_Del	DEL	CTAA	CTAA	-			P-0001715-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1051	259	454	0	ENST00000357387.3:c.1262_1265del	p.Val421GlufsTer6	p.V421Efs*6	ENST00000357387	NM_152756.3	421	gTTAGa/ga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001597-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			617	249	536	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94180411	94180411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001597-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			961	88	800	0	ENST00000323929.3:c.1757C>T	p.Ser586Leu	p.S586L	ENST00000323929	NM_005591.3	586	tCg/tTg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2130319	2130319	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001597-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			661	87	568	0	ENST00000219476.3:c.3551C>A	p.Ala1184Glu	p.A1184E	ENST00000219476	NM_000548.3	1184	gCg/gAg					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39932914	39932914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147493277		P-0001597-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	78	511	0	ENST00000378444.4:c.1685C>T	p.Ser562Leu	p.S562L	ENST00000378444	NM_001123385.1	562	tCg/tTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	65	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46546404	46546404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	96	326	0	ENST00000262741.5:c.125C>G	p.Pro42Arg	p.P42R	ENST00000262741	NM_003629.3	42	cCt/cGt					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66737006	66737006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	89	275	0	ENST00000307102.5:c.529C>G	p.Leu177Val	p.L177V	ENST00000307102	NM_002755.3	177	Ctg/Gtg					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42795414	42795438	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCCCCAGCAGCTTCAGGTGGCAC	CTGCCCCAGCAGCTTCAGGTGGCAC	-			P-0004207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	53	147	0	ENST00000575354.2:c.2505_2529del	p.Gln835HisfsTer81	p.Q835Hfs*81	ENST00000575354	NM_015125.3	832	CTGCCCCAGCAGCTTCAGGTGGCACct/ct					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986870	36986886	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGTGCCCCCGCCGC	CCCGGTGCCCCCGCCGC	-			P-0004207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	47	106	0	ENST00000354822.5:c.803_819del	p.Gly268ValfsTer165	p.G268Vfs*165	ENST00000354822	NM_001079668.2	268	gGCGGCGGGGGCACCGGG/g					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0003572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	218	309	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577541	7577541	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	322	229	1	ENST00000269305.4:c.740A>T	p.Asn247Ile	p.N247I	ENST00000269305	NM_001126112.2	247	aAc/aTc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	233	321	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	192	323	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974687	21974687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	92	332	0	ENST00000304494.5:c.140G>T	p.Arg47Met	p.R47M	ENST00000304494	NM_000077.4	47	aGg/aTg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974687	21974687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003572-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	92	332	0	ENST00000304494.5:c.140G>T	p.Arg47Met	p.R47M	ENST00000304494	NM_000077.4	47	aGg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579521	7579521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	270	336	0	ENST00000269305.4:c.166G>T	p.Glu56Ter	p.E56*	ENST00000269305	NM_001126112.2	56	Gaa/Taa					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29543740	29543740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	50	290	0	ENST00000389048.3:c.1423C>T	p.Pro475Ser	p.P475S	ENST00000389048	NM_004304.4	475	Cct/Tct					NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0000966-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			242	48	236	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000966-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			113	317	285	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151864233	151864233	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0000966-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			610	108	350	0	ENST00000262189.6:c.9748C>T	p.Gln3250Ter	p.Q3250*	ENST00000262189	NM_170606.2	3250	Cag/Tag					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435675	56435675	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000966-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			193	39	161	0	ENST00000407977.2:c.1462C>T	p.Gln488Ter	p.Q488*	ENST00000407977		488	Cag/Tag					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40741807	40741807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000966-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			386	31	339	0	ENST00000392038.2:c.1165C>T	p.Pro389Ser	p.P389S	ENST00000392038	NM_001626.4	389	Ccc/Tcc					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57485865	57485865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000966-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			408	97	350	0	ENST00000371085.3:c.1166G>A	p.Arg389His	p.R389H	ENST00000371085	NM_000516.4	389	cGt/cAt					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766151	66766151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000966-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			58	173	184	0	ENST00000374690.3:c.1163A>G	p.Lys388Arg	p.K388R	ENST00000374690	NM_000044.3	388	aAg/aGg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123229240	123229240	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000966-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			442	32	264	0	ENST00000218089.9:c.3724C>T	p.Arg1242Ter	p.R1242*	ENST00000218089	NM_001042749.1	1242	Cga/Tga					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412882	49412886	+	frameshift_variant	Frame_Shift_Del	DEL	CTCGA	CTCGA	-			P-0000966-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			500	190	571	0	ENST00000418115.1:c.137_141del	p.Ile46SerfsTer20	p.I46Sfs*20	ENST00000418115	NM_001664.2	46	aTCGAG/a					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022900	31022901	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0000966-T02-IM3									Unknown	UNKNOWN				MSK-IMPACT			296	171	364	0	ENST00000375687.4:c.2385_2386del	p.Trp796GlyfsTer3	p.W796Gfs*3	ENST00000375687	NM_015338.5	795	tcCTgg/tcgg					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056100	26056100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	32	292	0	ENST00000343677.2:c.557C>T	p.Ala186Val	p.A186V	ENST00000343677	NM_005319.3	186	gCc/gTc					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23625374	23625374	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	67	519	0	ENST00000261584.4:c.3152T>C	p.Ile1051Thr	p.I1051T	ENST00000261584	NM_024675.3	1051	aTt/aCt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5231375	5231375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	20	396	0	ENST00000357368.4:c.2101G>C	p.Glu701Gln	p.E701Q	ENST00000357368	NM_002850.3	701	Gag/Cag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0000977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	115	181	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16257885	16257885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	32	191	2	ENST00000375759.3:c.5150C>T	p.Ala1717Val	p.A1717V	ENST00000375759	NM_015001.2	1717	gCg/gTg					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372022	55372022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	26	205	0	ENST00000297316.4:c.712G>A	p.Ala238Thr	p.A238T	ENST00000297316	NM_022454.3	238	Gcc/Acc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	189	579	0	ENST00000304494.5:c.95T>C	p.Leu32Pro	p.L32P	ENST00000304494	NM_000077.4	32	cTg/cCg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	189	579	0	ENST00000304494.5:c.95T>C	p.Leu32Pro	p.L32P	ENST00000304494	NM_000077.4	32	cTg/cCg					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4117527	4117527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	44	197	0	ENST00000262948.5:c.193G>A	p.Gly65Ser	p.G65S	ENST00000262948	NM_030662.3	65	Ggc/Agc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134644705	134644706	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0000977-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	40	372	0	ENST00000398015.3:c.106_107delGC	p.Ala36GlnfsTer14	p.A36Qfs*14	ENST00000398015	NM_004441.4	36	GCc/c					NEWRECORD																																																																									
TMEM127	0	MSKCC	GRCh37	2	96919673	96919673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000644-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			465	107	414	0	ENST00000258439.3:c.590G>A	p.Arg197His	p.R197H	ENST00000258439	NM_001193304.2	197	cGc/cAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	103	352	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	23	402	1	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	51	388	1	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0003074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	127	334	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0003074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	54	342	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0003074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	56	244	1	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	96	372	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954221	48954221	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0003074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	82	374	0	ENST00000267163.4:c.1421+1G>C		p.X474_splice	ENST00000267163	NM_000321.2	474						NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39930888	39930888	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0003074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	65	514	0	ENST00000378444.4:c.3051+2T>C		p.X1017_splice	ENST00000378444	NM_001123385.1	1017						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002230-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			587	23	387	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002230-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			999	21	313	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178276	112178276	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs146048493		P-0001859-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			874	596	585	0	ENST00000257430.4:c.6985A>G	p.Ile2329Val	p.I2329V	ENST00000257430	NM_000038.5	2329	Att/Gtt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117710536	117710536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001859-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			749	225	324	0	ENST00000368508.3:c.1736C>T	p.Pro579Leu	p.P579L	ENST00000368508	NM_002944.2	579	cCt/cTt					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2946426	2946426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001859-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			983	417	496	0	ENST00000396946.4:c.3311G>A	p.Arg1104Gln	p.R1104Q	ENST00000396946	NM_032415.4	1104	cGg/cAg					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46531782	46531782	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001859-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			940	655	682	0	ENST00000262741.5:c.565delC	p.Gln189ArgfsTer23	p.Q189Rfs*23	ENST00000262741	NM_003629.3	189	Cag/ag					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226562006	226562006	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001859-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			693	372	523	0	ENST00000366794.5:c.1991delA	p.Lys664SerfsTer12	p.K664Sfs*12	ENST00000366794	NM_001618.3	664	aAg/ag					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134880931	134880931	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001859-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			895	131	469	0	ENST00000398015.3:c.1494del	p.Gly499AlafsTer28	p.G499Afs*28	ENST00000398015	NM_004441.4	498	ccT/cc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49427687	49427687	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001410-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	239	380	0	ENST00000301067.7:c.10801C>T	p.Gln3601Ter	p.Q3601*	ENST00000301067	NM_003482.3	3601	Caa/Taa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593604	55593609	+	inframe_deletion	In_Frame_Del	DEL	GGAAGG	GGAAGG	-			P-0001410-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	1243	492	0	ENST00000288135.5:c.1670_1675del	p.Trp557_Val559delinsPhe	p.W557_V559delinsF	ENST00000288135	NM_000222.2	557	tGGAAGGtt/ttt					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135787756	135787756	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001410-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	306	396	1	ENST00000298552.3:c.826del	p.Ser276LeufsTer42	p.S276Lfs*42	ENST00000298552	NM_001162426.1	276	Tct/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	137	303	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142176536	142176536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	76	567	0	ENST00000350721.4:c.7565G>T	p.Gly2522Val	p.G2522V	ENST00000350721	NM_001184.3	2522	gGa/gTa					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	236696	236696	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143798161		P-0000455-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	20	177	0	ENST00000264932.6:c.1414G>A	p.Glu472Lys	p.E472K	ENST00000264932	NM_004168.2	472	Gaa/Aaa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			785	1264	299	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0002861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	62	289	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120462174	120462174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	37	296	0	ENST00000256646.2:c.5542G>A	p.Asp1848Asn	p.D1848N	ENST00000256646	NM_024408.3	1848	Gat/Aat					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858231	9858231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			816	49	401	0	ENST00000330684.3:c.3170C>T	p.Ala1057Val	p.A1057V	ENST00000330684	NM_001134407.1	1057	gCc/gTc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858769	9858769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	29	236	0	ENST00000330684.3:c.2632G>A	p.Glu878Lys	p.E878K	ENST00000330684	NM_001134407.1	878	Gaa/Aaa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	136	321	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47705619	47705619	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	170	350	0	ENST00000233146.2:c.2419A>G	p.Thr807Ala	p.T807A	ENST00000233146	NM_000251.2	807	Act/Gct					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	427271	427271	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	65	250	0	ENST00000399788.2:c.2897+1G>T		p.X966_splice	ENST00000399788	NM_001042603.1	966						NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103514410	103514410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	93	285	0	ENST00000355739.4:c.911A>T	p.Asp304Val	p.D304V	ENST00000355739	NM_000123.3	304	gAt/gTt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610073	10610073	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	145	378	0	ENST00000171111.5:c.637G>T	p.Glu213Ter	p.E213*	ENST00000171111	NM_203500.1	213	Gag/Tag					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20152120	20152120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	104	422	0	ENST00000379607.5:c.210G>T	p.Trp70Cys	p.W70C	ENST00000379607	NM_001412.3	70	tgG/tgT					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53241084	53241084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	111	437	0	ENST00000375401.3:c.1127G>T	p.Cys376Phe	p.C376F	ENST00000375401	NM_004187.3	376	tGt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577585	7577590	+	inframe_deletion	In_Frame_Del	DEL	GATGGT	GATGGT	-			P-0001986-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	61	264	0	ENST00000269305.4:c.691_696del	p.Thr231_Ile232del	p.T231_I232del	ENST00000269305	NM_001126112.2	231	ACCATC/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002814-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	105	411	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113265	209113265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002814-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	34	562	1	ENST00000345146.2:c.242A>G	p.Lys81Arg	p.K81R	ENST00000345146	NM_005896.2	81	aAg/aGg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002814-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	60	474	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001137-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	116	396	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001137-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	126	563	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001137-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	49	233	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	141	503	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86658435	86658435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			560	37	516	0	ENST00000274376.6:c.1400C>G	p.Thr467Arg	p.T467R	ENST00000274376	NM_002890.2	467	aCa/aGa					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17955108	17955108	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56384680		P-0001762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	113	460	0	ENST00000458235.1:c.119G>A	p.Arg40His	p.R40H	ENST00000458235	NM_000215.3	40	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576913	7576941	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTGTTGGGCAGTGCTAGGAAAGAGGCAA	GTTGTTGGGCAGTGCTAGGAAAGAGGCAA	-			P-0001762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	43	514	0	ENST00000269305.4:c.920-15_933del		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			149	28	275	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151853050	151853050	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002363-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	57	230	0	ENST00000262189.6:c.11905del	p.Val3969LeufsTer18	p.V3969Lfs*18	ENST00000262189	NM_170606.2	3969	Gtt/tt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152007051	152007051	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0000103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			839	228	396	0	ENST00000262189.6:c.849A>T	p.Glu283Asp	p.E283D	ENST00000262189	NM_170606.2	283	gaA/gaT					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692953	89692953	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0000103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	192	297	0	ENST00000371953.3:c.437T>G	p.Leu146Ter	p.L146*	ENST00000371953	NM_000314.4	146	tTa/tGa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061655	38061655	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	26	107	0	ENST00000250448.2:c.334G>C	p.Gly112Arg	p.G112R	ENST00000250448	NM_004496.3	112	Ggc/Cgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	275	325	1	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9523329	9523329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			915	202	474	0	ENST00000353224.5:c.1908G>C	p.Met636Ile	p.M636I	ENST00000353224	NM_177990.2	636	atG/atC					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24135766	24135766	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000103-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	525	375	0	ENST00000263121.7:c.253G>T	p.Ala85Ser	p.A85S	ENST00000263121	NM_003073.3	85	Gcc/Tcc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176638918	176638918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	143	480	0	ENST00000439151.2:c.3518G>A	p.Arg1173His	p.R1173H	ENST00000439151	NM_022455.4	1173	cGc/cAc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212570087	212570087	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1020	55	511	0	ENST00000342788.4:c.1154A>G	p.Asp385Gly	p.D385G	ENST00000342788	NM_005235.2	385	gAc/gGc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66217259	66217259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			731	42	349	0	ENST00000273854.3:c.2356G>A	p.Ala786Thr	p.A786T	ENST00000273854	NM_004439.5	786	Gca/Aca					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30673028	30673028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	38	451	0	ENST00000376406.3:c.3932G>T	p.Arg1311Met	p.R1311M	ENST00000376406	NM_014641.2	1311	aGg/aTg					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760723	133760723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	93	449	0	ENST00000318560.5:c.3046C>A	p.Arg1016Ser	p.R1016S	ENST00000318560	NM_005157.4	1016	Cgc/Agc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139405621	139405621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	27	343	0	ENST00000277541.6:c.2570G>A	p.Cys857Tyr	p.C857Y	ENST00000277541	NM_017617.3	857	tGc/tAc					NEWRECORD																																																																									
CD276	0	MSKCC	GRCh37	15	73996053	73996053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	77	364	0	ENST00000318443.5:c.787G>A	p.Asp263Asn	p.D263N	ENST00000318443	NM_001024736.1	263	Gat/Aat					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2104405	2104405	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	92	410	0	ENST00000219476.3:c.445A>G	p.Asn149Asp	p.N149D	ENST00000219476	NM_000548.3	149	Aat/Gat					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31368217	31368217	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			488	93	320	0	ENST00000328111.2:c.88C>T	p.Gln30Ter	p.Q30*	ENST00000328111	NM_006892.3	30	Cag/Tag					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41558731	41558731	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	114	514	0	ENST00000263253.7:c.3676A>C	p.Ile1226Leu	p.I1226L	ENST00000263253	NM_001429.3	1226	Ata/Cta					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765124	66765124	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002192-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	114	341	0	ENST00000374690.3:c.136A>G	p.Ser46Gly	p.S46G	ENST00000374690	NM_000044.3	46	Agc/Ggc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	438	139	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67575432	67575432	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	73	155	0	ENST00000274335.5:c.505A>G	p.Thr169Ala	p.T169A	ENST00000274335		169	Aca/Gca					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134571	41134571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	116	353	1	ENST00000379561.5:c.1057G>T	p.Ala353Ser	p.A353S	ENST00000379561	NM_002015.3	353	Gca/Tca					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40354416	40354416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	140	443	0	ENST00000293328.3:c.2179G>T	p.Asp727Tyr	p.D727Y	ENST00000293328	NM_012448.3	727	Gac/Tac					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33792782	33792782	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	17	58	0	ENST00000498907.2:c.539C>G	p.Pro180Arg	p.P180R	ENST00000498907	NM_004364.3	180	cCt/cGt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40710608	40710608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	58	131	0	ENST00000373198.4:c.4243G>A	p.Glu1415Lys	p.E1415K	ENST00000373198	NM_133170.3	1415	Gag/Aag					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044886	47044889	+	frameshift_variant	Frame_Shift_Del	DEL	AGTG	AGTG	-			P-0004169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	68	163	1	ENST00000329236.7:c.1980_1983del	p.Ser660ArgfsTer63	p.S660Rfs*63	ENST00000329236	NM_001204466.1	660	AGTGag/ag					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52712568	52712593	+	frameshift_variant	Frame_Shift_Del	DEL	CCTTATAGTCTCGGATGGTATTATAG	CCTTATAGTCTCGGATGGTATTATAG	-			P-0003488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	115	313	0	ENST00000394830.3:c.159_184del	p.Tyr54Ter	p.Y54*	ENST00000394830	NM_018313.4	53	ctCTATAATACCATCCGAGACTATAAGGat/ctat					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108153438	108153438	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0003488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	45	244	0	ENST00000278616.4:c.3581del	p.Leu1194Ter	p.L1194*	ENST00000278616	NM_000051.3	1193	gTt/gt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72832590	72832591	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0003488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	47	330	2	ENST00000268489.5:c.3990_3991delinsTT	p.Lys1330_Asn1331delinsAsnTyr	p.K1330_N1331delinsNY	ENST00000268489	NM_006885.3	1330	aaGAac/aaTTac					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002838-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			298	43	329	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002838-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			340	17	309	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29443612	29443612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002838-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			390	38	280	0	ENST00000389048.3:c.3605G>A	p.Gly1202Glu	p.G1202E	ENST00000389048	NM_004304.4	1202	gGa/gAa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002752-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	19	443	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002752-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			67	16	350	0	ENST00000269305.4:c.721T>C	p.Ser241Pro	p.S241P	ENST00000269305	NM_001126112.2	241	Tcc/Ccc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100829	27100829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002752-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			83	30	434	0	ENST00000324856.7:c.4111C>T	p.Arg1371Trp	p.R1371W	ENST00000324856	NM_006015.4	1371	Cgg/Tgg					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190656591	190656591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002752-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	21	459	0	ENST00000441310.2:c.56C>T	p.Thr19Ile	p.T19I	ENST00000441310	NM_000534.4	19	aCt/aTt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175288	112175288	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002752-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			54	60	366	0	ENST00000257430.4:c.3997A>T	p.Lys1333Ter	p.K1333*	ENST00000257430	NM_000038.5	1333	Aaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	187	468	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157469967	157469967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	213	485	0	ENST00000346085.5:c.2761C>A	p.Pro921Thr	p.P921T	ENST00000346085	NM_020732.3	921	Cct/Act					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123224772	123224772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1039	229	769	1	ENST00000218089.9:c.3536C>A	p.Ala1179Glu	p.A1179E	ENST00000218089	NM_001042749.1	1179	gCa/gAa					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	34	192	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	34	192	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	34	192	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6048638	6048638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	38	234	0	ENST00000265849.7:c.13G>A	p.Glu5Lys	p.E5K	ENST00000265849	NM_000535.5	5	Gag/Aag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108218052	108218052	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	40	245	0	ENST00000278616.4:c.8631G>C	p.Leu2877Phe	p.L2877F	ENST00000278616	NM_000051.3	2877	ttG/ttC					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206649694	206649694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	44	141	0	ENST00000367120.3:c.529G>A	p.Glu177Lys	p.E177K	ENST00000367120	NM_014002.3	177	Gag/Aag					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25978935	25978935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	77	339	0	ENST00000435504.4:c.988G>A	p.Glu330Lys	p.E330K	ENST00000435504		330	Gaa/Aaa					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149512506	149512506	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0003858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	12	141	0	ENST00000261799.4:c.935-1G>C		p.X312_splice	ENST00000261799	NM_002609.3	312						NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108224498	108224498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	76	257	0	ENST00000278616.4:c.8677G>C	p.Ala2893Pro	p.A2893P	ENST00000278616	NM_000051.3	2893	Gct/Cct					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108224504	108224504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	79	258	1	ENST00000278616.4:c.8683G>A	p.Glu2895Lys	p.E2895K	ENST00000278616	NM_000051.3	2895	Gaa/Aaa					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23649235	23649235	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	43	381	0	ENST00000261584.4:c.147G>T	p.Lys49Asn	p.K49N	ENST00000261584	NM_024675.3	49	aaG/aaT					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44928869	44928869	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	60	212	0	ENST00000377967.4:c.1969G>T	p.Glu657Ter	p.E657*	ENST00000377967	NM_021140.2	657	Gaa/Taa					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100617217	100617217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	85	198	0	ENST00000308731.7:c.532G>T	p.Gly178Trp	p.G178W	ENST00000308731	NM_000061.2	178	Ggg/Tgg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0001464-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			48	138	153	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176687052	176687052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001464-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			758	40	334	0	ENST00000439151.2:c.5029G>T	p.Ala1677Ser	p.A1677S	ENST00000439151	NM_022455.4	1677	Gct/Tct					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467955	50467955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001464-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	157	141	0	ENST00000331340.3:c.1190C>T	p.Ser397Phe	p.S397F	ENST00000331340	NM_006060.4	397	tCc/tTc					NEWRECORD																																																																									
ATRX	546	MSKCC	GRCh37	X	76938099	76938100	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0001464-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	394	347	1	ENST00000373344.5:c.2648_2649del	p.Gln883ArgfsTer13	p.Q883Rfs*13	ENST00000373344	NM_000489.3	883	cAA/c					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	106	291	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518099	8518099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1334	248	663	1	ENST00000356435.5:c.1292C>T	p.Ser431Leu	p.S431L	ENST00000356435		431	tCg/tTg					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110437616	110437616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	228	436	0	ENST00000375856.3:c.785C>T	p.Ser262Leu	p.S262L	ENST00000375856	NM_003749.2	262	tCg/tTg					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1081	391	872	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23647416	23647417	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AA			P-0001021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1059	225	827	0	ENST00000261584.4:c.450_451delinsTT	p.Gln150_Gln151delinsHisTer	p.Q150_Q151delinsH*	ENST00000261584	NM_024675.3	150	caGCag/caTTag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	143	370	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	221	205	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128845224	128845224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	188	212	1	ENST00000249373.3:c.718G>A	p.Val240Ile	p.V240I	ENST00000249373	NM_005631.4	240	Gtc/Atc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5244311	5244311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	193	455	0	ENST00000357368.4:c.1171G>A	p.Gly391Ser	p.G391S	ENST00000357368	NM_002850.3	391	Ggc/Agc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099799	157099799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	16	242	0	ENST00000346085.5:c.736G>A	p.Gly246Ser	p.G246S	ENST00000346085	NM_020732.3	246	Ggc/Agc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405998	70405998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	72	471	0	ENST00000373644.4:c.3512A>T	p.Asn1171Ile	p.N1171I	ENST00000373644	NM_030625.2	1171	aAt/aTt					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12871790	12871799	+	frameshift_variant	Frame_Shift_Del	DEL	AACAGAAGAA	AACAGAAGAA	-			P-0000483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	95	230	0	ENST00000228872.4:c.509_518delCAGAAGAAAA	p.Thr170MetfsTer52	p.T170Mfs*52	ENST00000228872	NM_004064.3	169	agAACAGAAGAA/ag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002896-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	148	169	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55144624	55144624	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002896-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	162	398	0	ENST00000257290.5:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000257290	NM_006206.4	700	Aag/Gag					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6431629	6431629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002896-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	48	191	0	ENST00000356142.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000356142	NM_018890.3	61	cAa/cGa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191492	10191492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	96	334	0	ENST00000256474.2:c.485G>A	p.Cys162Tyr	p.C162Y	ENST00000256474	NM_000551.3	162	tGc/tAc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53239927	53239927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	142	309	0	ENST00000375401.3:c.1514G>A	p.Gly505Asp	p.G505D	ENST00000375401	NM_004187.3	505	gGc/gAc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108199835	108199835	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	122	298	0	ENST00000278616.4:c.7180del	p.Ser2394GlnfsTer12	p.S2394Qfs*12	ENST00000278616	NM_000051.3	2393	Ttt/tt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108218090	108218090	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0002576-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			119	155	192	0	ENST00000278616.4:c.8669T>C	p.Leu2890Pro	p.L2890P	ENST00000278616	NM_000051.3	2890	cTa/cCa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420804	49420804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002576-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			152	45	206	1	ENST00000301067.7:c.14945G>A	p.Trp4982Ter	p.W4982*	ENST00000301067	NM_003482.3	4982	tGg/tAg					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30691808	30691820	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAAGCTCCCCT	CCCAAGCTCCCCT	-			P-0002576-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			208	132	345	0	ENST00000359013.4:c.385_397del	p.Pro129ThrfsTer16	p.P129Tfs*16	ENST00000359013	NM_001024847.2	129	CCCAAGCTCCCCTac/ac					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	38	165	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	38	165	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	38	165	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	28	257	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	69	340	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70014355	70014355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1249	67	650	0	ENST00000352241.4:c.1519C>T	p.Arg507Trp	p.R507W	ENST00000352241	NM_198159.2	507	Cgg/Tgg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002625-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			177	91	128	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152027813	152027813	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002625-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			349	160	260	0	ENST00000262189.6:c.262C>T	p.Gln88Ter	p.Q88*	ENST00000262189	NM_170606.2	88	Caa/Taa					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102100462	102100462	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002625-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			353	335	269	0	ENST00000282441.5:c.1306T>A	p.Ser436Thr	p.S436T	ENST00000282441	NM_001130145.2	436	Tca/Aca					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061151	38061151	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002625-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			122	22	66	0	ENST00000250448.2:c.838A>G	p.Ser280Gly	p.S280G	ENST00000250448	NM_004496.3	280	Agc/Ggc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061099	38061108	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCCTTGC	GGGTCCTTGC	-			P-0002625-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			98	20	66	0	ENST00000250448.2:c.881_890del	p.Arg294ProfsTer24	p.R294Pfs*24	ENST00000250448	NM_004496.3	294	cGCAAGGACCCc/cc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061120	38061140	+	inframe_deletion	In_Frame_Del	DEL	CCGCCCTTGGCGCCGCTGCCC	CCGCCCTTGGCGCCGCTGCCC	-			P-0002625-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			95	22	59	0	ENST00000250448.2:c.849_869del	p.Gly284_Gly290del	p.G284_G290del	ENST00000250448	NM_004496.3	283	ggGGGCAGCGGCGCCAAGGGCGGc/ggc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	199	384	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2972201	2972201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	90	227	0	ENST00000396946.4:c.1538C>T	p.Pro513Leu	p.P513L	ENST00000396946	NM_032415.4	513	cCc/cTc					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103514940	103514940	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	96	199	0	ENST00000355739.4:c.1441G>T	p.Val481Leu	p.V481L	ENST00000355739	NM_000123.3	481	Gtg/Ttg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610227	10610227	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	214	615	0	ENST00000171111.5:c.483G>T	p.Met161Ile	p.M161I	ENST00000171111	NM_203500.1	161	atG/atT					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221321	1221322	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	156	356	0	ENST00000326873.7:c.848_849del	p.Ser283Ter	p.S283*	ENST00000326873	NM_000455.4	282	CTc/c					NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36809564	36809564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000420-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			278	84	206	0	ENST00000373129.3:c.901G>A	p.Glu301Lys	p.E301K	ENST00000373129	NM_032017.1	301	Gag/Aag					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220437220	220437220	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	29	511	2	ENST00000243786.2:c.124G>T	p.Gly42Trp	p.G42W	ENST00000243786	NM_002191.3	42	Ggg/Tgg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66213771	66213771	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	42	254	0	ENST00000273854.3:c.2658+1G>T		p.X886_splice	ENST00000273854	NM_004439.5	886						NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143066999	143066999	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	72	319	0	ENST00000262992.4:c.1714C>G	p.Pro572Ala	p.P572A	ENST00000262992	NM_001101669.1	572	Cca/Gca					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93953201	93953201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	34	484	0	ENST00000369303.4:c.2940C>A	p.Ser980Arg	p.S980R	ENST00000369303	NM_004440.3	980	agC/agA					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2968283	2968283	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	33	314	0	ENST00000396946.4:c.1703C>A	p.Pro568Gln	p.P568Q	ENST00000396946	NM_032415.4	568	cCg/cAg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8528735	8528735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	23	258	0	ENST00000356435.5:c.397C>A	p.Gln133Lys	p.Q133K	ENST00000356435		133	Cag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	27	328	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243484	46243484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	48	302	0	ENST00000334344.6:c.1837C>T	p.Gln613Ter	p.Q613*	ENST00000334344	NM_152641.2	613	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	27	176	1	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16040679	16040679	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	41	369	0	ENST00000268712.3:c.1455G>C	p.Glu485Asp	p.E485D	ENST00000268712	NM_006311.3	485	gaG/gaC					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16040727	16040727	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	26	254	0	ENST00000268712.3:c.1408-1G>C		p.X470_splice	ENST00000268712	NM_006311.3	470						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29486028	29486028	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	21	184	0	ENST00000358273.4:c.205A>G	p.Arg69Gly	p.R69G	ENST00000358273	NM_001042492.2	69	Aga/Gga					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022668	31022668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	28	298	0	ENST00000375687.4:c.2153G>T	p.Arg718Ile	p.R718I	ENST00000375687	NM_015338.5	718	aGa/aTa					NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	82	157	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17129492	17129492	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			731	190	374	0	ENST00000285071.4:c.394G>A	p.Glu132Lys	p.E132K	ENST00000285071	NM_144997.5	132	Gag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057988	27057988	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			771	210	312	0	ENST00000324856.7:c.1696C>T	p.Gln566Ter	p.Q566*	ENST00000324856	NM_006015.4	566	Cag/Tag					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085800	16085800	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			934	96	387	0	ENST00000281043.3:c.976A>C	p.Ile326Leu	p.I326L	ENST00000281043	NM_005378.4	326	Atc/Ctc					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37067374	37067374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			877	197	382	0	ENST00000231790.2:c.1285G>A	p.Glu429Lys	p.E429K	ENST00000231790	NM_000249.3	429	Gag/Aag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47161718	47161718	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1259	301	551	0	ENST00000409792.3:c.4408C>T	p.Pro1470Ser	p.P1470S	ENST00000409792	NM_014159.6	1470	Cca/Tca					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142281551	142281551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1083	252	447	0	ENST00000350721.4:c.693G>C	p.Gln231His	p.Q231H	ENST00000350721	NM_001184.3	231	caG/caC					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176665487	176665487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	167	398	0	ENST00000439151.2:c.4171G>T	p.Glu1391Ter	p.E1391*	ENST00000439151	NM_022455.4	1391	Gaa/Taa					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13978788	13978788	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1447	268	496	0	ENST00000405192.2:c.319C>T	p.Gln107Ter	p.Q107*	ENST00000405192	NM_001163147.1	107	Cag/Tag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624301	89624301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			797	188	243	0	ENST00000371953.3:c.75G>C	p.Leu25Phe	p.L25F	ENST00000371953	NM_000314.4	25	ttG/ttC					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108214089	108214089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			856	202	345	0	ENST00000278616.4:c.8409G>C	p.Lys2803Asn	p.K2803N	ENST00000278616	NM_000051.3	2803	aaG/aaC					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12043942	12043942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			957	226	421	0	ENST00000396373.4:c.1321G>A	p.Glu441Lys	p.E441K	ENST00000396373	NM_001987.4	441	Gag/Aag					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133240981	133240981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1024	104	464	0	ENST00000320574.5:c.2536G>C	p.Ala846Pro	p.A846P	ENST00000320574	NM_006231.2	846	Gca/Cca					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40762959	40762959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	153	283	0	ENST00000392038.2:c.49G>A	p.Glu17Lys	p.E17K	ENST00000392038	NM_001626.4	17	Gaa/Aaa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44918502	44918502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	360	332	0	ENST00000377967.4:c.985C>T	p.Gln329Ter	p.Q329*	ENST00000377967	NM_021140.2	329	Cag/Tag					NEWRECORD																																																																									
CDKN1A	1026	MSKCC	GRCh37	6	36651970	36651980	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCGACTGT	GCCGCGACTGT	-			P-0002311-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			787	226	337	0	ENST00000244741.5:c.93_103del	p.Ser31ArgfsTer13	p.S31Rfs*13	ENST00000244741	NM_000389.4	31	aGCCGCGACTGT/a					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6414401	6414401	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	25	117	0	ENST00000356142.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000356142	NM_018890.3	12	gGa/gTa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0001469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	152	169	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0001469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			560	234	225	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467437	66467437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	165	146	0	ENST00000273854.3:c.832G>A	p.Ala278Thr	p.A278T	ENST00000273854	NM_004439.5	278	Gcc/Acc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10274210	10274210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	102	110	0	ENST00000330684.3:c.59G>T	p.Gly20Val	p.G20V	ENST00000330684	NM_001134407.1	20	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	217	131	1	ENST00000269305.4:c.537T>G	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caG					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0001469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	73	78	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55268033	55268033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	24	284	2	ENST00000275493.2:c.2873G>A	p.Arg958His	p.R958H	ENST00000275493	NM_005228.3	958	cGc/cAc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9923468	9923468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	43	323	0	ENST00000330684.3:c.1819C>A	p.Leu607Ile	p.L607I	ENST00000330684	NM_001134407.1	607	Ctt/Att					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68867278	68867278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			166	68	267	1	ENST00000261769.5:c.2525C>T	p.Ala842Val	p.A842V	ENST00000261769	NM_004360.3	842	gCt/gTt					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110250105	110250105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	45	215	0	ENST00000374672.4:c.570del	p.Asn191ThrfsTer3	p.N191Tfs*3	ENST00000374672	NM_004235.4	190	atC/at					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99478211	99478220	+	protein_altering_variant	In_Frame_Del	DEL	GCAAGCATGC	GCAAGCATGC	TGCTTTT			P-0002649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	46	198	0	ENST00000268035.6:c.3115_3124delinsTGCTTTT	p.Ala1039_Arg1042delinsCysPheCys	p.A1039_R1042delinsCFC	ENST00000268035	NM_000875.3	1039	GCAAGCATGCgt/TGCTTTTgt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68867272	68867272	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002649-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	65	255	0	ENST00000261769.5:c.2520del	p.Glu841LysfsTer5	p.E841Kfs*5	ENST00000261769	NM_004360.3	840	tCc/tc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0000869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	421	418	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212295723	212295723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	121	407	0	ENST00000342788.4:c.2590C>A	p.Leu864Ile	p.L864I	ENST00000342788	NM_005235.2	864	Cta/Ata					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69987120	69987120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	137	305	0	ENST00000352241.4:c.502G>T	p.Val168Phe	p.V168F	ENST00000352241	NM_198159.2	168	Gtc/Ttc					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128205020	128205020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	114	216	0	ENST00000341105.2:c.421T>C	p.Tyr141His	p.Y141H	ENST00000341105	NM_032638.4	141	Tac/Cac					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916860	178916862	+	missense_variant	Missense_Mutation	ONP	TTT	TTT	AAG			P-0000869-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	133	406	0	ENST00000263967.3:c.247_249delinsAAG	p.Phe83Lys	p.F83K	ENST00000263967	NM_006218.2	83	TTT/AAG					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162741925	162741925	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			363	134	268	0	ENST00000367921.3:c.1616C>A	p.Ser539Ter	p.S539*	ENST00000367921	NM_006182.2	539	tCa/tAa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439268	52439268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			195	66	147	0	ENST00000460680.1:c.974C>T	p.Ser325Phe	p.S325F	ENST00000460680	NM_004656.3	325	tCc/tTc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175222	112175222	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			190	45	180	0	ENST00000257430.4:c.3931A>T	p.Ile1311Phe	p.I1311F	ENST00000257430	NM_000038.5	1311	Att/Ttt					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18719941	18719941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			338	106	321	0	ENST00000266497.5:c.3838C>G	p.Leu1280Val	p.L1280V	ENST00000266497		1280	Cta/Gta					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420885	49420885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			331	128	201	0	ENST00000301067.7:c.14864C>A	p.Ser4955Tyr	p.S4955Y	ENST00000301067	NM_003482.3	4955	tCc/tAc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3778345	3778345	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			124	35	114	0	ENST00000262367.5:c.6703C>T	p.Gln2235Ter	p.Q2235*	ENST00000262367	NM_004380.2	2235	Caa/Taa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207166	1207166	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			203	126	242	0	ENST00000326873.7:c.254T>A	p.Leu85Ter	p.L85*	ENST00000326873	NM_000455.4	85	tTg/tAg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602496	10602496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			182	198	266	0	ENST00000171111.5:c.1082C>T	p.Pro361Leu	p.P361L	ENST00000171111	NM_203500.1	361	cCg/cTg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11138500	11138500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			278	211	356	0	ENST00000344626.4:c.3256G>T	p.Asp1086Tyr	p.D1086Y	ENST00000344626	NM_003072.3	1086	Gat/Tat					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766499	66766499	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			277	86	259	0	ENST00000374690.3:c.1511A>G	p.Tyr504Cys	p.Y504C	ENST00000374690	NM_000044.3	504	tAc/tGc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108115739	108115774	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAACCCAAGAAAAAGGTATAAAGGAAATGTTTACTG	AAACCCAAGAAAAAGGTATAAAGGAAATGTTTACTG	-			P-0003937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			126	107	146	0	ENST00000278616.4:c.887_901+21del		p.X296_splice	ENST00000278616	NM_000051.3	296						NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139814954	139814954	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003937-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			551	185	566	0	ENST00000247668.2:c.949del	p.Leu317Ter	p.L317*	ENST00000247668	NM_021138.3	316	gCc/gc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187525719	187525719	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	142	424	0	ENST00000441802.2:c.10360C>G	p.Pro3454Ala	p.P3454A	ENST00000441802	NM_005245.3	3454	Cca/Gca					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91292632	91292632	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	188	433	0	ENST00000355112.3:c.134A>G	p.Asn45Ser	p.N45S	ENST00000355112	NM_000057.2	45	aAc/aGc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001202-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			175	178	426	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151856060	151856060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	83	388	0	ENST00000262189.6:c.11558G>A	p.Arg3853Gln	p.R3853Q	ENST00000262189	NM_170606.2	3853	cGg/cAg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8492966	8492966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	12	156	0	ENST00000356435.5:c.2363C>T	p.Ser788Phe	p.S788F	ENST00000356435		788	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	742	387	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532693	187532693	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	224	362	0	ENST00000441802.2:c.9700G>A	p.Glu3234Lys	p.E3234K	ENST00000441802	NM_005245.3	3234	Gaa/Aaa					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67655381	67655381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	204	358	1	ENST00000264010.4:c.1244G>A	p.Arg415Gln	p.R415Q	ENST00000264010	NM_006565.3	415	cGg/cAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40735458	40735458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	166	317	0	ENST00000373198.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000373198	NM_133170.3	1139	Cgg/Tgg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188240	10188240	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	42	829	0	ENST00000256474.2:c.383T>C	p.Leu128Pro	p.L128P	ENST00000256474	NM_000551.3	128	cTt/cCt					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77047193	77047193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	33	965	0	ENST00000356341.3:c.1351G>A	p.Gly451Ser	p.G451S	ENST00000356341	NM_002576.4	451	Ggc/Agc					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	101984927	101984927	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	39	491	0	ENST00000282441.5:c.374C>G	p.Ala125Gly	p.A125G	ENST00000282441	NM_001130145.2	125	gCt/gGt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163371	47163371	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	35	790	0	ENST00000409792.3:c.2755del	p.Glu919SerfsTer3	p.E919Sfs*3	ENST00000409792	NM_014159.6	919	Gag/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0000231-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			698	46	289	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			77	247	533	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245429	153245429	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			335	95	475	0	ENST00000281708.4:c.1762G>T	p.Glu588Ter	p.E588*	ENST00000281708	NM_033632.3	588	Gaa/Taa					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38967279	38967279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	201	401	0	ENST00000357387.3:c.1202G>A	p.Arg401His	p.R401H	ENST00000357387	NM_152756.3	401	cGt/cAt					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59861749	59861749	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	60	523	0	ENST00000259008.2:c.1510A>T	p.Ile504Phe	p.I504F	ENST00000259008	NM_032043.2	504	Atc/Ttc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922166	39922166	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	94	733	1	ENST00000378444.4:c.4006G>C	p.Asp1336His	p.D1336H	ENST00000378444	NM_001123385.1	1336	Gac/Cac					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178928072	178928098	+	inframe_deletion	In_Frame_Del	DEL	TGGATTAGAAGATTTGCTGAACCCTAT	TGGATTAGAAGATTTGCTGAACCCTAT	-			P-0001183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	27	380	0	ENST00000263967.3:c.1353_1379del	p.Leu452_Gly460del	p.L452_G460del	ENST00000263967	NM_006218.2	450	caTGGATTAGAAGATTTGCTGAACCCTATt/cat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000398-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	72	276	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185198226	185198226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000398-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	40	349	0	ENST00000265026.3:c.2708C>T	p.Ser903Leu	p.S903L	ENST00000265026	NM_004721.4	903	tCg/tTg					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39742733	39742733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	162	308	0	ENST00000361337.2:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000361337	NM_003286.2	526	Gag/Cag					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145742856	145742856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	27	142	0	ENST00000428558.2:c.155C>T	p.Thr52Met	p.T52M	ENST00000428558	NM_004260.3	52	aCg/aTg					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57862002	57862002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	136	307	1	ENST00000228682.2:c.1303G>A	p.Ala435Thr	p.A435T	ENST00000228682	NM_005269.2	435	Gcc/Acc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41991104	41991104	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	103	306	0	ENST00000219905.7:c.2057C>A	p.Ser686Tyr	p.S686Y	ENST00000219905	NM_001164273.1	686	tCt/tAt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68849629	68849629	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	79	309	0	ENST00000261769.5:c.1532A>T	p.Gln511Leu	p.Q511L	ENST00000261769	NM_004360.3	511	cAg/cTg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41101155	41101155	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	77	155	0	ENST00000373198.4:c.1201C>T	p.Arg401Trp	p.R401W	ENST00000373198	NM_133170.3	401	Cgg/Tgg					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986893	36986893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	77	242	0	ENST00000354822.5:c.796G>A	p.Gly266Ser	p.G266S	ENST00000354822	NM_001079668.2	266	Ggc/Agc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0001573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	437	554	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261						NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63759868	63759868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	417	588	0	ENST00000279873.7:c.521C>T	p.Thr174Met	p.T174M	ENST00000279873	NM_032199.2	174	aCg/aTg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937234	76937234	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001573-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			674	409	680	0	ENST00000373344.5:c.3514del	p.Thr1172LeufsTer18	p.T1172Lfs*18	ENST00000373344	NM_000489.3	1172	Act/ct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	33	308	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128200786	128200786	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0001924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	21	204	0	ENST00000341105.2:c.1019C>T	p.Ser340Leu	p.S340L	ENST00000341105	NM_032638.4	340	tCg/tTg					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55964318	55964318	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	36	292	0	ENST00000263923.4:c.2495A>T	p.Asp832Val	p.D832V	ENST00000263923	NM_002253.2	832	gAc/gTc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	33	162	1	ENST00000267163.4:c.1959delA	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	18	193	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			277	51	229	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
FAM175A	0	MSKCC	GRCh37	4	84403395	84403395	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	46	312	0	ENST00000321945.7:c.90A>C	p.Glu30Asp	p.E30D	ENST00000321945	NM_139076.2	30	gaA/gaC					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175118	112175118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	44	185	0	ENST00000257430.4:c.3827C>A	p.Ser1276Ter	p.S1276*	ENST00000257430	NM_000038.5	1276	tCa/tAa					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553440	106553440	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	24	143	0	ENST00000369096.4:c.1405T>C	p.Ser469Pro	p.S469P	ENST00000369096	NM_001198.3	469	Tcg/Ccg					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38273419	38273419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			657	44	501	0	ENST00000425967.3:c.1916C>A	p.Ala639Asp	p.A639D	ENST00000425967	NM_001174067.1	639	gCc/gAc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720837	89720837	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	75	196	0	ENST00000371953.3:c.988A>T	p.Lys330Ter	p.K330*	ENST00000371953	NM_000314.4	330	Aaa/Taa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29509612	29509612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	87	368	0	ENST00000358273.4:c.817C>T	p.Leu273Phe	p.L273F	ENST00000358273	NM_001042492.2	273	Ctc/Ttc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15302827	15302827	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	23	231	0	ENST00000263388.2:c.623A>C	p.Asn208Thr	p.N208T	ENST00000263388	NM_000435.2	208	aAc/aCc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175595	112175595	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000772-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			848	110	409	0	ENST00000257430.4:c.4304del	p.Arg1435LysfsTer38	p.R1435Kfs*38	ENST00000257430	NM_000038.5	1435	aGa/aa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	31	379	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0002780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	81	366	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212543825	212543825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	10	386	0	ENST00000342788.4:c.1574G>T	p.Arg525Leu	p.R525L	ENST00000342788	NM_005235.2	525	cGc/cTc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437813	52437813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	31	331	0	ENST00000460680.1:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000460680	NM_004656.3	450	Gag/Aag					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18435665	18435665	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	34	211	0	ENST00000266497.5:c.650G>T	p.Trp217Leu	p.W217L	ENST00000266497		217	tGg/tTg					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38511499	38511541	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTTCTGCTTCCTCAGACCGCCAGGACCTGGAGCAGCCGGACC	GGTTCTGCTTCCTCAGACCGCCAGGACCTGGAGCAGCCGGACC	-			P-0002780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	24	200	0	ENST00000254066.5:c.1013-14_1041del		p.X338_splice	ENST00000254066	NM_000964.3	338						NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8389348	8389348	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	144	381	0	ENST00000356435.5:c.4270G>T	p.Ala1424Ser	p.A1424S	ENST00000356435		1424	Gcc/Tcc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68844185	68844185	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			764	57	410	0	ENST00000261769.5:c.773A>G	p.Asn258Ser	p.N258S	ENST00000261769	NM_004360.3	258	aAc/aGc					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38487582	38487582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			570	345	400	0	ENST00000254066.5:c.112C>T	p.Pro38Ser	p.P38S	ENST00000254066	NM_000964.3	38	Cca/Tca					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41256974	41256974	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			670	38	297	0	ENST00000357654.3:c.213-1G>A		p.X71_splice	ENST00000357654	NM_007294.3	71						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	19	482	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0004648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	44	440	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0002949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	16	399	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47028895	47028895	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0002949-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	11	108	0	ENST00000329236.7:c.199G>T	p.Glu67Ter	p.E67*	ENST00000329236	NM_001204466.1	67	Gag/Tag					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37657655	37657655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	143	832	1	ENST00000447079.4:c.2572C>T	p.Arg858Trp	p.R858W	ENST00000447079	NM_015083.1	858	Cgg/Tgg					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37673732	37673734	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0001407-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			522	106	837	0	ENST00000447079.4:c.2887_2889del	p.Val963del	p.V963del	ENST00000447079	NM_015083.1	962	gaTGTt/gat					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41275757	41275757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			783	183	301	0	ENST00000349496.5:c.1652C>A	p.Thr551Lys	p.T551K	ENST00000349496	NM_001904.3	551	aCg/aAg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441448	52441448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	270	417	0	ENST00000460680.1:c.404C>T	p.Pro135Leu	p.P135L	ENST00000460680	NM_004656.3	135	cCg/cTg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178938900	178938900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	72	68	0	ENST00000263967.3:c.2142C>A	p.Asn714Lys	p.N714K	ENST00000263967	NM_006218.2	714	aaC/aaA					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149503838	149503838	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	212	474	0	ENST00000261799.4:c.1998C>A	p.Asn666Lys	p.N666K	ENST00000261799	NM_002609.3	666	aaC/aaA					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508491	106508491	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			60	66	87	0	ENST00000359195.3:c.485T>C	p.Val162Ala	p.V162A	ENST00000359195	NM_002649.2	162	gTc/gCc					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370913	55370913	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			619	124	300	0	ENST00000297316.4:c.215T>A	p.Met72Lys	p.M72K	ENST00000297316	NM_022454.3	72	aTg/aAg					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	173	266	0	ENST00000371953.3:c.395G>T	p.Gly132Val	p.G132V	ENST00000371953	NM_000314.4	132	gGt/gTt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49448143	49448143	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			323	346	355	0	ENST00000301067.7:c.457G>T	p.Glu153Ter	p.E153*	ENST00000301067	NM_003482.3	153	Gag/Tag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857910	9857910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	370	368	0	ENST00000330684.3:c.3491C>T	p.Thr1164Met	p.T1164M	ENST00000330684	NM_001134407.1	1164	aCg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	437	441	0	ENST00000269305.4:c.96+1G>A		p.X32_splice	ENST00000269305	NM_001126112.2	32						NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467911	66467922	+	inframe_deletion	In_Frame_Del	DEL	TGGAGATCCAAC	TGGAGATCCAAC	-			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			642	307	388	0	ENST00000273854.3:c.347_358del	p.Ser116_Ser119del	p.S116_S119del	ENST00000273854	NM_004439.5	116	aGTTGGATCTCCAat/aat					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061010	38061031	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGGGCCGGCGCGCCCTCTAG	CGGGGGCCGGCGCGCCCTCTAG	-			P-0001426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	85	219	0	ENST00000250448.2:c.958_979del	p.Leu320GlyfsTer23	p.L320Gfs*23	ENST00000250448	NM_004496.3	320	CTAGAGGGCGCGCCGGCCCCCGgg/gg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	74	169	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	201	281	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45867687	45867687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	135	334	0	ENST00000391945.4:c.713A>G	p.Asn238Ser	p.N238S	ENST00000391945	NM_000400.3	238	aAc/aGc					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158456	26158456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62623440		P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	252	310	0	ENST00000289316.2:c.59C>T	p.Thr20Ile	p.T20I	ENST00000289316	NM_138720.2	20	aCt/aTt					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93640003	93640003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	45	291	0	ENST00000375746.1:c.1332G>A	p.Trp444Ter	p.W444*	ENST00000375746	NM_001174167.1	444	tgG/tgA					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134043	41134043	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	118	613	0	ENST00000379561.5:c.1585C>T	p.Gln529Ter	p.Q529*	ENST00000379561	NM_002015.3	529	Cag/Tag					NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30129396	30129396	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	263	482	1	ENST00000263025.4:c.632G>C	p.Arg211Pro	p.R211P	ENST00000263025	NM_002746.2	211	cGg/cCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576888	7576888	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	218	294	0	ENST00000269305.4:c.958A>T	p.Lys320Ter	p.K320*	ENST00000269305	NM_001126112.2	320	Aag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001824-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	13	525	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116397792	116397792	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1030	114	815	1	ENST00000397752.3:c.2066A>T	p.His689Leu	p.H689L	ENST00000397752	NM_000245.2	689	cAc/cTc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8340407	8340407	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201651279		P-0002289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	75	623	0	ENST00000356435.5:c.5189G>A	p.Arg1730Gln	p.R1730Q	ENST00000356435		1730	cGg/cAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40713386	40713386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002289-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	60	542	0	ENST00000373198.4:c.4129C>G	p.Arg1377Gly	p.R1377G	ENST00000373198	NM_133170.3	1377	Cga/Gga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001140-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			29	97	178	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18650574	18650574	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001140-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			871	133	182	0	ENST00000266497.5:c.2785G>C	p.Asp929His	p.D929H	ENST00000266497		929	Gat/Cat					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5222757	5222757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001140-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	22	164	0	ENST00000357368.4:c.3046C>T	p.Arg1016Trp	p.R1016W	ENST00000357368	NM_002850.3	1016	Cgg/Tgg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0001990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	96	229	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	205	276	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	192	267	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59793361	59793361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	158	388	0	ENST00000259008.2:c.2443C>T	p.Gln815Ter	p.Q815*	ENST00000259008	NM_032043.2	815	Cag/Tag					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53245058	53245058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001990-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	283	390	0	ENST00000375401.3:c.882C>G	p.Ser294Arg	p.S294R	ENST00000375401	NM_004187.3	294	agC/agG					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0000436-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	314	374	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23632730	23632730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000436-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	120	331	0	ENST00000261584.4:c.3066G>A	p.Met1022Ile	p.M1022I	ENST00000261584	NM_024675.3	1022	atG/atA					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584560	48584560	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000436-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	183	275	0	ENST00000342988.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000342988	NM_005359.5	245	Cag/Tag					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76845391	76845391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000436-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			851	64	457	0	ENST00000373344.5:c.6130C>T	p.Leu2044Phe	p.L2044F	ENST00000373344	NM_000489.3	2044	Ctc/Ttc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105679	27105679	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	128	340	0	ENST00000324856.7:c.5290G>T	p.Glu1764Ter	p.E1764*	ENST00000324856	NM_006015.4	1764	Gaa/Taa					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118166241	118166241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	56	334	0	ENST00000369448.3:c.751C>T	p.Leu251Phe	p.L251F	ENST00000369448	NM_017709.3	251	Ctt/Ttt					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48027086	48027086	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	173	414	0	ENST00000234420.5:c.1964T>A	p.Leu655Ter	p.L655*	ENST00000234420	NM_000179.2	655	tTa/tAa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8504308	8504308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			696	192	417	0	ENST00000356435.5:c.1775G>A	p.Gly592Asp	p.G592D	ENST00000356435		592	gGc/gAc					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56482611	56482611	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	159	473	0	ENST00000267101.3:c.1068G>T	p.Lys356Asn	p.K356N	ENST00000267101	NM_001982.3	356	aaG/aaT					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68845625	68845625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	88	454	0	ENST00000261769.5:c.871G>T	p.Asp291Tyr	p.D291Y	ENST00000261769	NM_004360.3	291	Gat/Tat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			49	322	444	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78923303	78923303	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	125	459	0	ENST00000306801.3:c.3326T>A	p.Val1109Glu	p.V1109E	ENST00000306801	NM_020761.2	1109	gTg/gAg					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39713159	39713159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	73	217	0	ENST00000361337.2:c.565G>A	p.Asp189Asn	p.D189N	ENST00000361337	NM_003286.2	189	Gat/Aat					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716210	52716215	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTCGGT	CTCGGT	-			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	34	354	0	ENST00000322088.6:c.654_659delCTCGGT	p.Asp218_Val220delinsGlu	p.D218_V220delinsE	ENST00000322088	NM_014225.5	218	gaCTCGGTg/gag					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176520239	176520240	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0000517-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			29	96	326	0	ENST00000292408.4:c.1158_1159delGGinsC	p.Ala387ProfsTer64	p.A387Pfs*64	ENST00000292408	NM_213647.1	386	ctGGcc/ctCcc					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204518697	204518697	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002111-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	26	446	0	ENST00000367182.3:c.1360A>G	p.Thr454Ala	p.T454A	ENST00000367182	NM_001278516.1	454	Acg/Gcg					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28608322	28608322	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002111-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	22	510	0	ENST00000241453.7:c.1734G>T	p.Met578Ile	p.M578I	ENST00000241453	NM_004119.2	578	atG/atT					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47656963	47656963	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000355-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	181	348	0	ENST00000233146.2:c.1159C>G	p.Leu387Val	p.L387V	ENST00000233146	NM_000251.2	387	Ctt/Gtt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3786037	3786037	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000355-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	333	445	0	ENST00000262367.5:c.4728G>T	p.Glu1576Asp	p.E1576D	ENST00000262367	NM_004380.2	1576	gaG/gaT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000355-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			65	311	342	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937744	76937745	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0000355-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1034	857	554	0	ENST00000373344.5:c.3003_3004delAG	p.Lys1001AsnfsTer3	p.K1001Nfs*3	ENST00000373344	NM_000489.3	1001	aaAGta/aata					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0001941-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			284	123	717	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15272166	15272206	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCCCGGGCAGGCCAGCGTCAGCTTCTTGCCCCGCCCCC	GGGGCCCGGGCAGGCCAGCGTCAGCTTCTTGCCCCGCCCCC	-			P-0001941-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			85	69	216	0	ENST00000263388.2:c.6233_6273del	p.Arg2078ProfsTer3	p.R2078Pfs*3	ENST00000263388	NM_000435.2	2078	cGGGGGCGGGGCAAGAAGCTGACGCTGGCCTGCCCGGGCCCC/c					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	144	201	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71026102	71026127	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCGTTGCGTCGGAAGTAAGCAAA	GCCGCGTTGCGTCGGAAGTAAGCAAA	-			P-0003634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	165	247	0	ENST00000318789.4:c.1495_1520del	p.Phe499HisfsTer9	p.F499Hfs*9	ENST00000318789	NM_032682.5	499	TTTGCTTACTTCCGACGCAACGCGGCc/c					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52620470	52620470	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	53	314	0	ENST00000394830.3:c.3283C>T	p.Arg1095Ter	p.R1095*	ENST00000394830	NM_018313.4	1095	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	288	245	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	207	224	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48033738	48033738	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	47	222	0	ENST00000234420.5:c.3949C>A	p.His1317Asn	p.H1317N	ENST00000234420	NM_000179.2	1317	Cat/Aat					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189586388	189586388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	219	115	0	ENST00000264731.3:c.1012C>A	p.Arg338Ser	p.R338S	ENST00000264731	NM_003722.4	338	Cgc/Agc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55564527	55564527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	91	244	0	ENST00000288135.5:c.415A>G	p.Thr139Ala	p.T139A	ENST00000288135	NM_000222.2	139	Aca/Gca					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180050970	180050970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	112	295	0	ENST00000261937.6:c.1513G>A	p.Asp505Asn	p.D505N	ENST00000261937	NM_182925.4	505	Gac/Aac					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139418336	139418336	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	117	230	0	ENST00000277541.6:c.236G>A	p.Arg79His	p.R79H	ENST00000277541	NM_017617.3	79	cGc/cAc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2130244	2130244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	308	282	0	ENST00000219476.3:c.3476G>A	p.Arg1159Gln	p.R1159Q	ENST00000219476	NM_000548.3	1159	cGg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154935	112154935	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	300	221	0	ENST00000257430.4:c.1206delT	p.Glu403LysfsTer51	p.E403Kfs*51	ENST00000257430	NM_000038.5	402	cgT/cg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003334-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			113	135	300	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0003334-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			189	317	164	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187443345	187443345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003334-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			419	181	260	1	ENST00000232014.4:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000232014	NM_001130845.1	594	cGa/cAa					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206650073	206650073	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003334-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			298	187	268	0	ENST00000367120.3:c.593T>A	p.Phe198Tyr	p.F198Y	ENST00000367120	NM_014002.3	198	tTc/tAc					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	11	435	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35873672	35873672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	76	424	0	ENST00000303115.3:c.628G>A	p.Asp210Asn	p.D210N	ENST00000303115	NM_002185.3	210	Gat/Aat					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150022917	150022917	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0004670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	28	341	0	ENST00000253339.5:c.346G>C	p.Glu116Gln	p.E116Q	ENST00000253339		116	Gag/Cag					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68835794	68835794	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0004670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	97	370	0	ENST00000261769.5:c.385C>T	p.Gln129Ter	p.Q129*	ENST00000261769	NM_004360.3	129	Cag/Tag					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89351514	89351514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	52	861	1	ENST00000301030.4:c.1436C>T	p.Ser479Leu	p.S479L	ENST00000301030	NM_001256183.1	479	tCg/tTg					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3119203	3119203	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	79	497	0	ENST00000078429.4:c.736-1G>A		p.X246_splice	ENST00000078429	NM_002067.2	246						NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3119354	3119354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	70	393	0	ENST00000078429.4:c.886G>A	p.Asp296Asn	p.D296N	ENST00000078429	NM_002067.2	296	Gat/Aat					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3121176	3121176	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0004670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	59	338	0	ENST00000078429.4:c.1079G>T	p.Ter360LeuextTer48	p.*360Lext*48	ENST00000078429	NM_002067.2	360	tGa/tTa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030479	49030479	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			104	938	282	1	ENST00000267163.4:c.1959delA	p.Val654CysfsTer4	p.V654Cfs*4	ENST00000267163	NM_000321.2	652	Aaa/aa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11187166	11187166	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	264	445	1	ENST00000361445.4:c.6252G>T	p.Trp2084Cys	p.W2084C	ENST00000361445	NM_004958.3	2084	tgG/tgT					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43806111	43806111	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	257	414	0	ENST00000372470.3:c.907T>A	p.Trp303Arg	p.W303R	ENST00000372470	NM_005373.2	303	Tgg/Agg					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38950358	38950358	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	509	479	0	ENST00000357387.3:c.3592A>G	p.Thr1198Ala	p.T1198A	ENST00000357387	NM_152756.3	1198	Aca/Gca					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56180565	56180565	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	282	334	0	ENST00000399503.3:c.3894G>T	p.Met1298Ile	p.M1298I	ENST00000399503	NM_005921.1	1298	atG/atT					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81388090	81388090	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			19	353	487	0	ENST00000222390.5:c.285A>T	p.Gln95His	p.Q95H	ENST00000222390	NM_000601.4	95	caA/caT					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18747479	18747479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	436	394	0	ENST00000266497.5:c.3940G>A	p.Glu1314Lys	p.E1314K	ENST00000266497		1314	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0002050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			13	278	280	0	ENST00000269305.4:c.559+1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937312	76937312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			15	342	248	0	ENST00000373344.5:c.3436A>G	p.Thr1146Ala	p.T1146A	ENST00000373344	NM_000489.3	1146	Act/Gct					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134825335	134825358	+	inframe_deletion	In_Frame_Del	DEL	GCTCCCACTGCCCCTCCAACAGCC	GCTCCCACTGCCCCTCCAACAGCC	-			P-0002050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	428	346	0	ENST00000398015.3:c.857_880del	p.His286_Ser293del	p.H286_S293del	ENST00000398015	NM_004441.4	284	tGCTCCCACTGCCCCTCCAACAGCCgc/tgc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	301	335	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215632305	215632305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			572	77	544	0	ENST00000260947.4:c.1469C>T	p.Thr490Ile	p.T490I	ENST00000260947	NM_000465.2	490	aCc/aTc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115720	8115720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			927	106	511	0	ENST00000346208.3:c.1066A>G	p.Met356Val	p.M356V	ENST00000346208		356	Atg/Gtg					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64127763	64127763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			755	69	330	0	ENST00000334205.4:c.256C>T	p.Arg86Cys	p.R86C	ENST00000334205	NM_003942.2	86	Cgc/Tgc					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56487301	56487301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	59	309	0	ENST00000267101.3:c.1447G>A	p.Asp483Asn	p.D483N	ENST00000267101	NM_001982.3	483	Gac/Aac					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115109667	115109691	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGTCCGGCTTGGCTTCCAAGCCG	CCTGTCCGGCTTGGCTTCCAAGCCG	-			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			843	157	586	0	ENST00000257566.3:c.2187_2211del	p.Gly730ProfsTer151	p.G730Pfs*151	ENST00000257566	NM_016569.3	729	agCGGCTTGGAAGCCAAGCCGGACAGG/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579373	7579373	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	436	358	0	ENST00000269305.4:c.314del	p.Gly105AlafsTer18	p.G105Afs*18	ENST00000269305	NM_001126112.2	105	gGc/gc					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38511513	38511518	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGACCG	AGACCG	-			P-0001335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			669	93	277	0	ENST00000254066.5:c.1013-2_1016del		p.X338_splice	ENST00000254066	NM_000964.3	338						NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63850870	63850870	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002383-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			660	396	356	1	ENST00000279873.7:c.1648G>T	p.Glu550Ter	p.E550*	ENST00000279873	NM_032199.2	550	Gaa/Taa					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577475	64577475	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002383-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			637	244	365	0	ENST00000337652.1:c.107T>A	p.Leu36His	p.L36H	ENST00000337652	NM_130803.2	36	cTc/cAc					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544642	65544642	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002383-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			816	511	528	0	ENST00000358664.4:c.284T>A	p.Leu95Gln	p.L95Q	ENST00000358664	NM_002382.4	95	cTg/cAg					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65560493	65560493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002383-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			915	530	558	0	ENST00000358664.4:c.104G>A	p.Arg35His	p.R35H	ENST00000358664	NM_002382.4	35	cGt/cAt					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119720958	119720958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			510	133	591	0	ENST00000316626.5:c.217G>A	p.Ala73Thr	p.A73T	ENST00000316626		73	Gcc/Acc					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	405027	405027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			551	103	443	0	ENST00000380956.4:c.1109C>T	p.Ala370Val	p.A370V	ENST00000380956	NM_001195286.1	370	gCg/gTg					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2223241	2223241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			636	60	507	0	ENST00000326181.6:c.853G>C	p.Glu285Gln	p.E285Q	ENST00000326181	NM_032271.2	285	Gag/Cag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29684388	29684388	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			364	404	524	0	ENST00000358273.4:c.7970+1G>T		p.X2657_splice	ENST00000358273	NM_001042492.2	2657						NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38510675	38510675	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			778	765	440	0	ENST00000254066.5:c.929T>C	p.Phe310Ser	p.F310S	ENST00000254066	NM_000964.3	310	tTt/tCt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123224550	123224550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			726	97	604	1	ENST00000218089.9:c.3403G>A	p.Glu1135Lys	p.E1135K	ENST00000218089	NM_001042749.1	1135	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577561	7577566	+	inframe_deletion	In_Frame_Del	DEL	ACTGTT	ACTGTT	-			P-0002848-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			245	251	400	0	ENST00000269305.4:c.715_720delAACAGT	p.Asn239_Ser240del	p.N239_S240del	ENST00000269305	NM_001126112.2	239	AACAGT/-					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2956958	2956958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			482	47	329	0	ENST00000396946.4:c.2669C>T	p.Ser890Leu	p.S890L	ENST00000396946	NM_032415.4	890	tCg/tTg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151949089	151949089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	149	458	0	ENST00000262189.6:c.1556A>G	p.His519Arg	p.H519R	ENST00000262189	NM_170606.2	519	cAc/cGc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15288427	15288427	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002397-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	36	153	0	ENST00000263388.2:c.4312A>C	p.Asn1438His	p.N1438H	ENST00000263388	NM_000435.2	1438	Aac/Cac					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781340	135781340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	208	607	0	ENST00000298552.3:c.1625A>C	p.Lys542Thr	p.K542T	ENST00000298552	NM_001162426.1	542	aAg/aCg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101387	27101394	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTCTGC	CCCTCTGC	-			P-0003345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	103	300	0	ENST00000324856.7:c.4673_4680delCTGCCCCT	p.Ser1558CysfsTer11	p.S1558Cfs*11	ENST00000324856	NM_006015.4	1557	CCCTCTGCc/c					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063328	67063345	+	inframe_deletion	In_Frame_Del	DEL	CGACCAGAGAAGCAAGTT	CGACCAGAGAAGCAAGTT	-			P-0003345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	56	214	0	ENST00000412916.2:c.21_38del	p.Asp7_Phe12del	p.D7_F12del	ENST00000412916		6	ccCGACCAGAGAAGCAAGTTc/ccc					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33288357	33288357	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	283	399	0	ENST00000374542.5:c.1051G>C	p.Ala351Pro	p.A351P	ENST00000374542	NM_001141970.1	351	Gca/Cca					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577445	64577445	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	274	561	0	ENST00000337652.1:c.137A>C	p.His46Pro	p.H46P	ENST00000337652	NM_130803.2	46	cAt/cCt					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89690819	89690820	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0001886-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			168	132	305	0	ENST00000371953.3:c.227_228del	p.Tyr76Ter	p.Y76*	ENST00000371953	NM_000314.4	76	TAt/t					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	582	347	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			47	248	332	2	ENST00000269305.4:c.764T>A	p.Ile255Asn	p.I255N	ENST00000269305	NM_001126112.2	255	aTc/aAc					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131911617	131911617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	179	347	0	ENST00000265335.6:c.362C>T	p.Thr121Ile	p.T121I	ENST00000265335		121	aCa/aTa					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371927	55371927	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	33	53	0	ENST00000297316.4:c.617G>T	p.Cys206Phe	p.C206F	ENST00000297316	NM_022454.3	206	tGc/tTc					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24135805	24135805	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			612	155	446	0	ENST00000263121.7:c.292G>C	p.Glu98Gln	p.E98Q	ENST00000263121	NM_003073.3	98	Gag/Cag					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67100657	67100657	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	185	459	0	ENST00000412916.2:c.355del	p.Leu119TrpfsTer20	p.L119Wfs*20	ENST00000412916		119	Ctg/tg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16052797	16052801	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAT	AAAAT	-			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	342	417	0	ENST00000268712.3:c.873_877del	p.Leu291PhefsTer2	p.L291Ffs*2	ENST00000268712	NM_006311.3	291	ttATTTTtt/tttt					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59821883	59821884	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0002336-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			542	213	574	0	ENST00000259008.2:c.2166_2167del	p.Val723HisfsTer13	p.V723Hfs*13	ENST00000259008	NM_032043.2	722	acAGtc/actc					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	72	706	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100860	27100860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	59	519	0	ENST00000324856.7:c.4142C>A	p.Ala1381Asp	p.A1381D	ENST00000324856	NM_006015.4	1381	gCc/gAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577560	7577560	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001382-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	39	337	0	ENST00000269305.4:c.721T>C	p.Ser241Pro	p.S241P	ENST00000269305	NM_001126112.2	241	Tcc/Ccc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	415	344	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	160	339	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175561	112175561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	268	356	0	ENST00000257430.4:c.4271del	p.Pro1424GlnfsTer49	p.P1424Qfs*49	ENST00000257430	NM_000038.5	1424	Cca/ca					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81969932	81969932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	497	543	0	ENST00000359376.3:c.3001C>T	p.Arg1001Cys	p.R1001C	ENST00000359376	NM_002661.3	1001	Cgc/Tgc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17953858	17953869	+	inframe_deletion	In_Frame_Del	DEL	CCGGCCGCTGGG	CCGGCCGCTGGG	-			P-0003890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	311	269	0	ENST00000458235.1:c.533_544del	p.Ala178_Pro181del	p.A178_P181del	ENST00000458235	NM_000215.3	178	gCCCAGCGGCCGGga/gga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000211-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			799	33	957	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	269	449	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27102199	27102199	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0000446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	308	288	0	ENST00000324856.7:c.5124+1G>A		p.X1708_splice	ENST00000324856	NM_006015.4	1708						NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508983	106508983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			518	145	191	0	ENST00000359195.3:c.977T>C	p.Val326Ala	p.V326A	ENST00000359195	NM_002649.2	326	gTg/gCg					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	37020768	37020768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			685	128	333	0	ENST00000358127.4:c.77T>G	p.Val26Gly	p.V26G	ENST00000358127	NM_001280556.1	26	gTt/gGt					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215633997	215633999	+	missense_variant	Missense_Mutation	ONP	TTC	TTC	CTT			P-0000446-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			991	115	405	0	ENST00000260947.4:c.1352_1354delGAAinsAAG	p.GlySer451GluGly	p.GS451EG	ENST00000260947	NM_000465.2	451	gGAAgt/gAAGgt					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412884	49412884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	204	642	0	ENST00000418115.1:c.139G>A	p.Glu47Lys	p.E47K	ENST00000418115	NM_001664.2	47	Gag/Aag					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189526176	189526176	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	187	485	0	ENST00000264731.3:c.440C>G	p.Ser147Trp	p.S147W	ENST00000264731	NM_003722.4	147	tCg/tGg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44938403	44938403	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	169	293	0	ENST00000377967.4:c.2951T>C	p.Phe984Ser	p.F984S	ENST00000377967	NM_021140.2	984	tTc/tCc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76874320	76874320	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	22	391	0	ENST00000373344.5:c.5402A>G	p.Lys1801Arg	p.K1801R	ENST00000373344	NM_000489.3	1801	aAa/aGa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	124	450	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0003510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	54	482	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	78	326	0	ENST00000269305.4:c.434T>G	p.Leu145Arg	p.L145R	ENST00000269305	NM_001126112.2	145	cTg/cGg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151874812	151874812	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	83	322	0	ENST00000262189.6:c.7726del	p.Ala2576LeufsTer7	p.A2576Lfs*7	ENST00000262189	NM_170606.2	2576	Gct/ct					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3828707	3828707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002579-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			713	49	456	0	ENST00000262367.5:c.1935C>G	p.Asn645Lys	p.N645K	ENST00000262367	NM_004380.2	645	aaC/aaG					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870952	12870952	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002652-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	181	336	0	ENST00000228872.4:c.179G>A	p.Trp60Ter	p.W60*	ENST00000228872	NM_004064.3	60	tGg/tAg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916934	178916936	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0002652-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	227	275	0	ENST00000263967.3:c.321_323del	p.Arg108del	p.R108del	ENST00000263967	NM_006218.2	107	aaCCGt/aat					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164595	36164597	+	inframe_deletion	In_Frame_Del	DEL	CGC	CGC	-			P-0002652-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	324	211	0	ENST00000300305.3:c.1278_1280del	p.Arg427del	p.R427del	ENST00000300305		426	ccGCGc/ccc					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164607	36164613	+	frameshift_variant	Frame_Shift_Del	DEL	CGCTCGC	CGCTCGC	-			P-0002652-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	336	220	0	ENST00000300305.3:c.1262_1268del	p.Gly421AlafsTer171	p.G421Afs*171	ENST00000300305		421	gGCGAGCGc/gc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	33	333	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	9	328	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55146520	55146520	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	27	388	0	ENST00000257290.5:c.2194A>G	p.Met732Val	p.M732V	ENST00000257290	NM_006206.4	732	Atg/Gtg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911100	32911100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	23	251	0	ENST00000380152.3:c.2608A>T	p.Ile870Phe	p.I870F	ENST00000380152		870	Att/Ttt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			327	11	625	0	ENST00000269305.4:c.643A>T	p.Ser215Cys	p.S215C	ENST00000269305	NM_001126112.2	215	Agt/Tgt					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52714574	52714574	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	21	578	0	ENST00000322088.6:c.332C>A	p.Ser111Tyr	p.S111Y	ENST00000322088	NM_014225.5	111	tCc/tAc					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226576458	226576475	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TGAAGGAGACACAGGATA	TGAAGGAGACACAGGATA	-			P-0001128-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	36	566	0	ENST00000366794.5:c.618-19_618-2del		p.X206_splice	ENST00000366794	NM_001618.3	206						NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002733-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			784	126	640	0	ENST00000342988.3:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000342988	NM_005359.5	351	Gat/Aat					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49405971	49405971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002733-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			832	124	578	0	ENST00000418115.1:c.167C>T	p.Ala56Val	p.A56V	ENST00000418115	NM_001664.2	56	gCt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002887-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	160	351	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121426644	121426644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002887-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	64	390	0	ENST00000257555.6:c.335C>T	p.Pro112Leu	p.P112L	ENST00000257555		112	cCg/cTg					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103513917	103513917	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002887-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	63	433	0	ENST00000355739.4:c.733C>G	p.Gln245Glu	p.Q245E	ENST00000355739	NM_000123.3	245	Cag/Gag					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52663002	52663002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	141	576	0	ENST00000394830.3:c.1351G>C	p.Asp451His	p.D451H	ENST00000394830	NM_018313.4	451	Gat/Cat					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118368760	118368760	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	138	358	0	ENST00000534358.1:c.5774A>G	p.His1925Arg	p.H1925R	ENST00000534358	NM_005933.3	1925	cAt/cGt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32971123	32971123	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	274	591	0	ENST00000380152.3:c.9590A>G	p.Asp3197Gly	p.D3197G	ENST00000380152		3197	gAc/gGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			204	284	474	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108127020	108127040	+	inframe_deletion	In_Frame_Del	DEL	ATAGCTGAAGAGGAAGCATAT	ATAGCTGAAGAGGAAGCATAT	-			P-0000275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			654	58	601	0	ENST00000278616.4:c.2204_2224delTAGCTGAAGAGGAAGCATATA	p.Ile735_Tyr741del	p.I735_Y741del	ENST00000278616	NM_000051.3	735	ATAGCTGAAGAGGAAGCATAT/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	374	284	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243736316	243736316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1487	156	340	0	ENST00000263826.5:c.731C>T	p.Ser244Phe	p.S244F	ENST00000263826	NM_005465.4	244	tCt/tTt					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760404	133760404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	97	227	0	ENST00000318560.5:c.2727G>T	p.Lys909Asn	p.K909N	ENST00000318560	NM_005157.4	909	aaG/aaT					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760362	133760416	+	frameshift_variant	Frame_Shift_Del	DEL	CAAACCTGCCCCGCCGCCCCCACCAGCAGCCTCTGCAGGGAAGGCTGGAGGAAAG	CAAACCTGCCCCGCCGCCCCCACCAGCAGCCTCTGCAGGGAAGGCTGGAGGAAAG	-			P-0003244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	234	210	0	ENST00000318560.5:c.2686_2740del	p.Lys896ProfsTer28	p.K896Pfs*28	ENST00000318560	NM_005157.4	895	ctCAAACCTGCCCCGCCGCCCCCACCAGCAGCCTCTGCAGGGAAGGCTGGAGGAAAG/ct					NEWRECORD																																																																									
HIST1H3G	0	MSKCC	GRCh37	6	26271572	26271572	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	226	406	0	ENST00000305910.3:c.41del	p.Gly14AlafsTer23	p.G14Afs*23	ENST00000305910	NM_003534.2	14	gGc/gc					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0003401-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	209	332	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	42	280	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	398831	398831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1253	80	342	3	ENST00000380956.4:c.641G>T	p.Cys214Phe	p.C214F	ENST00000380956	NM_001195286.1	214	tGc/tTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0002968-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	46	368	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0003479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	324	440	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61719175	61719175	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	52	471	0	ENST00000401558.2:c.1882C>T	p.Gln628Ter	p.Q628*	ENST00000401558	NM_003400.3	628	Caa/Taa					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36012596	36012596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	31	258	0	ENST00000358208.4:c.40C>T	p.Arg14Trp	p.R14W	ENST00000358208		14	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577572	7577572	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003479-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	114	381	0	ENST00000269305.4:c.709delA	p.Met237CysfsTer10	p.M237Cfs*10	ENST00000269305	NM_001126112.2	237	Atg/tg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441217	52441217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002064-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	251	332	0	ENST00000460680.1:c.553G>A	p.Gly185Arg	p.G185R	ENST00000460680	NM_004656.3	185	Ggg/Agg					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138426000	138426000	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0002064-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	59	335	0	ENST00000289153.2:c.1530+1G>A		p.X510_splice	ENST00000289153	NM_006219.2	510						NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133209308	133209308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002064-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	226	415	0	ENST00000320574.5:c.6078G>T	p.Arg2026Ser	p.R2026S	ENST00000320574	NM_006231.2	2026	agG/agT					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39934294	39934294	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002064-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	166	409	1	ENST00000378444.4:c.305G>C	p.Arg102Pro	p.R102P	ENST00000378444	NM_001123385.1	102	cGg/cCg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27089730	27089730	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001735-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	25	158	0	ENST00000324856.7:c.2686G>T	p.Glu896Ter	p.E896*	ENST00000324856	NM_006015.4	896	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002420-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	15	529	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604752	48604763	+	inframe_deletion	In_Frame_Del	DEL	TTGAAATTCACT	TTGAAATTCACT	-			P-0001310-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	156	351	0	ENST00000342988.3:c.1575_1586del	p.Glu526_Leu529del	p.E526_L529del	ENST00000342988	NM_005359.5	525	aTTGAAATTCACTta/ata					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022561	31022580	+	frameshift_variant	Frame_Shift_Del	DEL	CACCCCTGGAAAGTGTACGT	CACCCCTGGAAAGTGTACGT	-			P-0001310-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	160	348	0	ENST00000375687.4:c.2048_2067del	p.Thr683ArgfsTer28	p.T683Rfs*28	ENST00000375687	NM_015338.5	682	agCACCCCTGGAAAGTGTACGTca/agca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001581-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			503	129	230	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17355119	17355119	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001581-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			602	119	208	0	ENST00000375499.3:c.399G>A	p.Met133Ile	p.M133I	ENST00000375499	NM_003000.2	133	atG/atA					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40497584	40497584	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001581-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			535	164	259	0	ENST00000264657.5:c.365C>T	p.Ala122Val	p.A122V	ENST00000264657	NM_139276.2	122	gCg/gTg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	481	493	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49397745	49397745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	491	559	0	ENST00000418115.1:c.479C>T	p.Ser160Leu	p.S160L	ENST00000418115	NM_001664.2	160	tCa/tTa					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134977919	134977919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	442	440	0	ENST00000398015.3:c.2912C>T	p.Ser971Phe	p.S971F	ENST00000398015	NM_004441.4	971	tCt/tTt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55594218	55594218	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	224	399	0	ENST00000288135.5:c.1921C>A	p.Leu641Ile	p.L641I	ENST00000288135	NM_000222.2	641	Ctc/Atc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163720	32163720	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	129	304	0	ENST00000375023.3:c.5506G>A	p.Glu1836Lys	p.E1836K	ENST00000375023	NM_004557.3	1836	Gag/Aag					NEWRECORD																																																																									
PNRC1	0	MSKCC	GRCh37	6	89790748	89790748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			603	546	779	0	ENST00000336032.3:c.135C>G	p.Ile45Met	p.I45M	ENST00000336032	NM_006813.2	45	atC/atG					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5072624	5072624	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	306	209	0	ENST00000381652.3:c.1774G>A	p.Glu592Lys	p.E592K	ENST00000381652	NM_004972.3	592	Gag/Aag					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8106035	8106035	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			203	215	261	0	ENST00000346208.3:c.855C>A	p.Asn285Lys	p.N285K	ENST00000346208		285	aaC/aaA					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40367034	40367043	+	frameshift_variant	Frame_Shift_Del	DEL	GCGCCGTGGA	GCGCCGTGGA	-			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	190	655	0	ENST00000397332.2:c.154_163delTCCACGGCGC	p.Ser52ProfsTer85	p.S52Pfs*85	ENST00000397332	NM_001033082.2	52	TCCACGGCGCcc/cc					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098969	178098970	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0000463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	716	385	0	ENST00000397062.3:c.75_76delGCinsAA	p.Gln26Lys	p.Q26K	ENST00000397062	NM_006164.4	25	agGCaa/agAAaa					NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0002549-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	30	363	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002549-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	76	493	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89445094	89445094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002549-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	37	499	0	ENST00000336596.2:c.1414G>C	p.Val472Leu	p.V472L	ENST00000336596	NM_005233.5	472	Gtc/Ctc					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43619249	43619249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002549-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	17	339	0	ENST00000355710.3:c.2932G>A	p.Glu978Lys	p.E978K	ENST00000355710	NM_020975.4	978	Gag/Aag					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473698	67473698	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002549-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	57	463	0	ENST00000327367.4:c.778T>G	p.Phe260Val	p.F260V	ENST00000327367	NM_005902.3	260	Ttc/Gtc					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45368283	45368283	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002549-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	84	504	0	ENST00000262160.6:c.1319T>G	p.Leu440Arg	p.L440R	ENST00000262160	NM_005901.5	440	cTt/cGt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944512	40944512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002549-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	53	525	0	ENST00000373198.4:c.1990T>C	p.Phe664Leu	p.F664L	ENST00000373198	NM_133170.3	664	Ttt/Ctt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70347197	70347197	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002549-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	56	571	0	ENST00000374080.3:c.2861T>G	p.Val954Gly	p.V954G	ENST00000374080		954	gTc/gGc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0003426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	14	247	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	157	193	0	ENST00000269305.4:c.487T>A	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	163	Tac/Aac					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242470	55242470	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	122	270	0	ENST00000275493.2:c.2240T>C	p.Leu747Ser	p.L747S	ENST00000275493	NM_005228.3	747	tTa/tCa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720661	89720661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	45	78	0	ENST00000371953.3:c.812T>C	p.Phe271Ser	p.F271S	ENST00000371953	NM_000314.4	271	tTt/tCt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242476	55242490	+	inframe_deletion	In_Frame_Del	DEL	AAGCAACATCTCCGA	AAGCAACATCTCCGA	-			P-0004117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	110	265	0	ENST00000275493.2:c.2250_2264del	p.Thr751_Ala755del	p.T751_A755del	ENST00000275493	NM_005228.3	749	gAAGCAACATCTCCGAaa/gaa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434745	49434745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002753-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	214	239	0	ENST00000301067.7:c.6808G>A	p.Glu2270Lys	p.E2270K	ENST00000301067	NM_003482.3	2270	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578175	7578175	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0002753-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	220	261	0	ENST00000269305.4:c.672+2T>C		p.X224_splice	ENST00000269305	NM_001126112.2	224						NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591832	48591832	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002753-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	218	282	0	ENST00000342988.3:c.995A>T	p.Asp332Val	p.D332V	ENST00000342988	NM_005359.5	332	gAt/gTt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5246017	5246017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002753-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	170	181	1	ENST00000357368.4:c.758G>A	p.Ser253Asn	p.S253N	ENST00000357368	NM_002850.3	253	aGc/aAc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76874417	76874419	+	missense_variant	Missense_Mutation	ONP	AAT	AAT	CAG			P-0002753-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	210	151	0	ENST00000373344.5:c.5303_5305delinsCTG	p.Asn1768_Leu1769delinsThrVal	p.N1768_L1769delinsTV	ENST00000373344	NM_000489.3	1768	aATTta/aCTGta					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	13	532	0	ENST00000349496.5:c.98C>A	p.Ser33Tyr	p.S33Y	ENST00000349496	NM_001904.3	33	tCt/tAt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68857531	68857531	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0004533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	45	270	0	ENST00000261769.5:c.2164+2delT		p.X722_splice	ENST00000261769	NM_004360.3	722						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578484	7578502	+	frameshift_variant	Frame_Shift_Del	DEL	GAATCAACCCACAGCTGCA	GAATCAACCCACAGCTGCA	-			P-0004533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	66	371	0	ENST00000269305.4:c.428_446delTGCAGCTGTGGGTTGATTC	p.Val143AlafsTer21	p.V143Afs*21	ENST00000269305	NM_001126112.2	143	gTGCAGCTGTGGGTTGATTCc/gc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68846036	68846037	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0004533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	71	522	0	ENST00000261769.5:c.1009_1010delAG		p.X337_splice	ENST00000261769	NM_004360.3	337						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			758	815	279	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			777	137	485	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332						NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65306996	65306996	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			914	69	448	2	ENST00000342505.4:c.2581C>A	p.Pro861Thr	p.P861T	ENST00000342505	NM_002227.2	861	Cca/Aca					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38950211	38950211	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1002	86	283	0	ENST00000357387.3:c.3739A>C	p.Thr1247Pro	p.T1247P	ENST00000357387	NM_152756.3	1247	Act/Cct					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5065038	5065038	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			803	334	430	0	ENST00000381652.3:c.1212T>G	p.Ile404Met	p.I404M	ENST00000381652	NM_004972.3	404	atT/atG					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125497635	125497635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1020	122	310	0	ENST00000428830.2:c.199G>A	p.Val67Ile	p.V67I	ENST00000428830	NM_001114121.2	67	Gta/Ata					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52724250	52724250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			724	82	388	0	ENST00000322088.6:c.1382C>T	p.Ala461Val	p.A461V	ENST00000322088	NM_014225.5	461	gCa/gTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579556	7579560	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAA	ATCAA	-			P-0001131-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	37	296	0	ENST00000269305.4:c.127_131del	p.Leu43AlafsTer7	p.L43Afs*7	ENST00000269305	NM_001126112.2	43	TTGATg/g					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	253	289	0	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602341	10602341	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	240	282	0	ENST00000171111.5:c.1237del	p.Arg413ValfsTer45	p.R413Vfs*45	ENST00000171111	NM_203500.1	413	Cgt/gt					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161969951	161969951	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	241	253	0	ENST00000366898.1:c.1018G>T	p.Gly340Trp	p.G340W	ENST00000366898	NM_004562.2	340	Ggg/Tgg					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28931588		P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	189	318	0	ENST00000349496.5:c.94G>A	p.Asp32Asn	p.D32N	ENST00000349496	NM_001904.3	32	Gac/Aac					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341727	8341727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	226	399	0	ENST00000356435.5:c.4913G>T	p.Gly1638Val	p.G1638V	ENST00000356435		1638	gGa/gTa					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333771	70333771	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			594	253	310	0	ENST00000373644.4:c.1676C>A	p.Thr559Asn	p.T559N	ENST00000373644	NM_030625.2	559	aCc/aAc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1222006	1222006	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0002635-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			309	203	205	1	ENST00000326873.7:c.920+1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	167	369	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391978	139391978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	188	419	1	ENST00000277541.6:c.6213G>T	p.Glu2071Asp	p.E2071D	ENST00000277541	NM_017617.3	2071	gaG/gaT					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212568828	212568828	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	56	416	0	ENST00000342788.4:c.1289+1G>T		p.X430_splice	ENST00000342788	NM_005235.2	430						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162987	47162987	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	186	449	0	ENST00000409792.3:c.3139G>A	p.Asp1047Asn	p.D1047N	ENST00000409792	NM_014159.6	1047	Gat/Aat					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71247432	71247432	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	158	389	0	ENST00000318789.4:c.101A>T	p.Glu34Val	p.E34V	ENST00000318789	NM_032682.5	34	gAg/gTg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93956604	93956604	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	92	783	1	ENST00000369303.4:c.2632G>T	p.Ala878Ser	p.A878S	ENST00000369303	NM_004440.3	878	Gct/Tct					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120438	94120438	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	227	796	0	ENST00000369303.4:c.613T>A	p.Cys205Ser	p.C205S	ENST00000369303	NM_004440.3	205	Tgc/Agc					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50459521	50459521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	124	355	0	ENST00000331340.3:c.810C>A	p.Asn270Lys	p.N270K	ENST00000331340	NM_006060.4	270	aaC/aaA					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	74	405	0	ENST00000288602.6:c.1786G>T	p.Gly596Cys	p.G596C	ENST00000288602	NM_004333.4	596	Ggt/Tgt					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95598873	95598873	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	134	449	0	ENST00000343455.3:c.286A>C	p.Thr96Pro	p.T96P	ENST00000343455	NM_177438.2	96	Acg/Ccg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88476326	88476326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	58	412	0	ENST00000360948.2:c.1806G>T	p.Lys602Asn	p.K602N	ENST00000360948	NM_001012338.2	602	aaG/aaT					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2223317	2223317	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	164	358	1	ENST00000326181.6:c.929A>T	p.Gln310Leu	p.Q310L	ENST00000326181	NM_032271.2	310	cAg/cTg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9624852	9624852	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	84	491	0	ENST00000353224.5:c.125T>A	p.Leu42Gln	p.L42Q	ENST00000353224	NM_177990.2	42	cTg/cAg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66942828	66942828	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	155	505	0	ENST00000374690.3:c.2607+2T>C		p.X869_splice	ENST00000374690	NM_000044.3	869						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610255	10610256	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0004615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	185	542	0	ENST00000171111.5:c.454_455del	p.Val152ProfsTer21	p.V152Pfs*21	ENST00000171111	NM_203500.1	152	GTc/c					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0000787-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			475	323	198	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52584762	52584762	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0002255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	102	694	0	ENST00000394830.3:c.4359+1G>A		p.X1453_splice	ENST00000394830	NM_018313.4	1453						NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135779166	135779166	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	83	549	0	ENST00000298552.3:c.2080C>T	p.Gln694Ter	p.Q694*	ENST00000298552	NM_001162426.1	694	Cag/Tag					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100415	8100415	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002255-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	78	752	0	ENST00000346208.3:c.389T>A	p.Leu130His	p.L130H	ENST00000346208		130	cTc/cAc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139399273	139399273	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000620-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	27	346	0	ENST00000277541.6:c.4870G>C	p.Glu1624Gln	p.E1624Q	ENST00000277541	NM_017617.3	1624	Gag/Cag					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91292988	91292988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000620-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	38	455	0	ENST00000355112.3:c.490G>A	p.Glu164Lys	p.E164K	ENST00000355112	NM_000057.2	164	Gag/Aag					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000620-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	8	573	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0001472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	162	238	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876181	35876181	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	22	268	0	ENST00000303115.3:c.973C>T	p.Gln325Ter	p.Q325*	ENST00000303115	NM_002185.3	325	Caa/Taa					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625435	69625435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	155	292	0	ENST00000334134.2:c.358C>T	p.Arg120Trp	p.R120W	ENST00000334134	NM_005247.2	120	Cgg/Tgg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108124561	108124563	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0001472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	90	240	0	ENST00000278616.4:c.1924_1926del	p.Glu642del	p.E642del	ENST00000278616	NM_000051.3	640	aAAGaa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576904	7576904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001472-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	370	255	0	ENST00000269305.4:c.942del	p.Ser315LeufsTer30	p.S315Lfs*30	ENST00000269305	NM_001126112.2	314	tcC/tc					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33286558	33286558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	38	224	0	ENST00000374542.5:c.2185G>A	p.Asp729Asn	p.D729N	ENST00000374542	NM_001141970.1	729	Gat/Aat					NEWRECORD																																																																									
RHEB	0	MSKCC	GRCh37	7	151216551	151216551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	32	228	0	ENST00000262187.5:c.47C>T	p.Ser16Phe	p.S16F	ENST00000262187	NM_005614.3	16	tCt/tTt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000900-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	4979	227	6	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30648456	30648456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000900-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			220	194	328	0	ENST00000359013.4:c.81C>G	p.His27Gln	p.H27Q	ENST00000359013	NM_001024847.2	27	caC/caG					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30069315	30069315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	191	315	0	ENST00000338641.4:c.1180G>T	p.Glu394Ter	p.E394*	ENST00000338641	NM_000268.3	394	Gag/Tag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444926	49444926	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	46	83	0	ENST00000301067.7:c.2540A>C	p.Glu847Ala	p.E847A	ENST00000301067	NM_003482.3	847	gAg/gCg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42003213	42003213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	317	628	0	ENST00000219905.7:c.2750C>T	p.Ser917Phe	p.S917F	ENST00000219905	NM_001164273.1	917	tCc/tTc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49439722	49439722	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	193	401	0	ENST00000301067.7:c.4722del	p.Met1575Ter	p.M1575*	ENST00000301067	NM_003482.3	1574	ccC/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577506	7577507	+	missense_variant	Missense_Mutation	DNP	CT	CT	GA			P-0003487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	149	221	0	ENST00000269305.4:c.774_775delinsTC	p.Glu258_Asp259delinsAspHis	p.E258_D259delinsDH	ENST00000269305	NM_001126112.2	258	gaAGac/gaTCac					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38272308	38272308	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			63	205	478	0	ENST00000425967.3:c.2059A>G	p.Lys687Glu	p.K687E	ENST00000425967	NM_001174067.1	687	Aag/Gag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108224505	108224505	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002020-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			52	207	483	0	ENST00000278616.4:c.8684A>C	p.Glu2895Ala	p.E2895A	ENST00000278616	NM_000051.3	2895	gAa/gCa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599332	55599332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002293-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			823	579	486	0	ENST00000288135.5:c.2458G>T	p.Asp820Tyr	p.D820Y	ENST00000288135	NM_000222.2	820	Gat/Tat					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593608	55593613	+	inframe_deletion	In_Frame_Del	DEL	GGTTGT	GGTTGT	-			P-0002293-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1041	718	547	0	ENST00000288135.5:c.1674_1679del	p.Lys558_Val560delinsAsn	p.K558_V560delinsN	ENST00000288135	NM_000222.2	558	aaGGTTGTt/aat					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135804251	135804251	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002293-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	47	376	0	ENST00000298552.3:c.9del	p.Gln3HisfsTer23	p.Q3Hfs*23	ENST00000298552	NM_001162426.1	3	caA/ca					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			707	136	359	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55948129	55948129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			921	230	362	0	ENST00000263923.4:c.3842C>T	p.Ser1281Phe	p.S1281F	ENST00000263923	NM_002253.2	1281	tCt/tTt					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26031919	26031919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	145	204	0	ENST00000244661.2:c.370G>C	p.Asp124His	p.D124H	ENST00000244661	NM_003537.3	124	Gac/Cac					NEWRECORD																																																																									
PIM1	0	MSKCC	GRCh37	6	37141754	37141754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			859	218	358	0	ENST00000373509.5:c.829G>C	p.Asp277His	p.D277H	ENST00000373509	NM_002648.3	277	Gat/Cat					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370798	55370798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	119	201	0	ENST00000297316.4:c.100G>A	p.Glu34Lys	p.E34K	ENST00000297316	NM_022454.3	34	Gag/Aag					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48937009	48937009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			741	269	377	0	ENST00000267163.4:c.777G>T	p.Arg259Ser	p.R259S	ENST00000267163	NM_000321.2	259	agG/agT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			654	211	391	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	202	335	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36206827	36206827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	105	230	0	ENST00000300305.3:c.685G>C	p.Glu229Gln	p.E229Q	ENST00000300305		229	Gag/Cag					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36206873	36206873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002425-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	118	216	0	ENST00000300305.3:c.639G>T	p.Gln213His	p.Q213H	ENST00000300305		213	caG/caT					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	193	243	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	207	327	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5123048	5123048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	190	354	0	ENST00000381652.3:c.3104C>T	p.Ser1035Leu	p.S1035L	ENST00000381652	NM_004972.3	1035	tCa/tTa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66213918	66213918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	125	304	0	ENST00000273854.3:c.2512G>A	p.Gly838Arg	p.G838R	ENST00000273854	NM_004439.5	838	Gga/Aga					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55268975	55268975	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	150	296	0	ENST00000275493.2:c.3041A>T	p.Asp1014Val	p.D1014V	ENST00000275493	NM_005228.3	1014	gAc/gTc					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117878947	117878947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	183	457	0	ENST00000297338.2:c.22C>G	p.Leu8Val	p.L8V	ENST00000297338	NM_006265.2	8	Ctc/Gtc					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45003746	45003746	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	94	253	0	ENST00000558401.1:c.2T>C	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	aTg/aCg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2129662	2129662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	67	236	0	ENST00000219476.3:c.3389C>G	p.Ser1130Cys	p.S1130C	ENST00000219476	NM_000548.3	1130	tCc/tGc					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23646794	23646794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	163	370	0	ENST00000261584.4:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000261584	NM_024675.3	358	cCc/cTc					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1325416	1325416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	84	298	0	ENST00000381566.1:c.259G>A	p.Asp87Asn	p.D87N	ENST00000381566		87	Gac/Aac					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47424260	47424260	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	35	353	1	ENST00000377045.4:c.265G>T	p.Glu89Ter	p.E89*	ENST00000377045	NM_001654.4	89	Gag/Tag					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76920216	76920216	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	138	513	0	ENST00000373344.5:c.3861T>A	p.Asp1287Glu	p.D1287E	ENST00000373344	NM_000489.3	1287	gaT/gaA					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101891349	101891349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	63	214	0	ENST00000374994.4:c.310G>T	p.Asp104Tyr	p.D104Y	ENST00000374994	NM_004612.2	104	Gac/Tac					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0004539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	28	444	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108200963	108200963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	112	376	0	ENST00000278616.4:c.7330G>A	p.Glu2444Lys	p.E2444K	ENST00000278616	NM_000051.3	2444	Gag/Aag					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156838432	156838432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55909005		P-0004539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	138	278	0	ENST00000524377.1:c.710C>T	p.Thr237Met	p.T237M	ENST00000524377	NM_002529.3	237	aCg/aTg					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202123079	202123079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	91	243	0	ENST00000358485.4:c.125C>A	p.Ala42Glu	p.A42E	ENST00000358485	NM_001080125.1	42	gCg/gAg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717624	89717624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	93	233	0	ENST00000371953.3:c.649G>T	p.Val217Phe	p.V217F	ENST00000371953	NM_000314.4	217	Gtc/Ttc					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50918796	50918796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	281	705	0	ENST00000440232.2:c.2666G>A	p.Arg889His	p.R889H	ENST00000440232	NM_002691.3	889	cGc/cAc					NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41566521	41566521	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	215	423	0	ENST00000263253.7:c.4398G>C	p.Trp1466Cys	p.W1466C	ENST00000263253	NM_001429.3	1466	tgG/tgC					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176638017	176638017	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001417-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	147	326	0	ENST00000439151.2:c.2617G>C	p.Gly873Arg	p.G873R	ENST00000439151	NM_022455.4	873	Ggt/Cgt					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176665392	176665392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001417-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	191	334	0	ENST00000439151.2:c.4076C>A	p.Ser1359Ter	p.S1359*	ENST00000439151	NM_022455.4	1359	tCa/tAa					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			898	288	519	0	ENST00000397062.3:c.101G>T	p.Arg34Leu	p.R34L	ENST00000397062	NM_006164.4	34	cGa/cTa					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245523	153245523	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	125	322	0	ENST00000281708.4:c.1668T>G	p.Ser556Arg	p.S556R	ENST00000281708	NM_033632.3	556	agT/agG					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57754849	57754849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			853	96	507	0	ENST00000274289.3:c.341C>T	p.Pro114Leu	p.P114L	ENST00000274289	NM_006622.3	114	cCt/cTt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108115639	108115639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			751	207	435	0	ENST00000278616.4:c.787C>T	p.Leu263Phe	p.L263F	ENST00000278616	NM_000051.3	263	Ctt/Ttt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49442898	49442898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	54	320	0	ENST00000301067.7:c.4010A>G	p.Glu1337Gly	p.E1337G	ENST00000301067	NM_003482.3	1337	gAg/gGg					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3832709	3832709	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	55	349	0	ENST00000262367.5:c.1549C>T	p.Gln517Ter	p.Q517*	ENST00000262367	NM_004380.2	517	Cag/Tag					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68835612	68835612	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			745	116	519	0	ENST00000261769.5:c.203A>G	p.Tyr68Cys	p.Y68C	ENST00000261769	NM_004360.3	68	tAt/tGt					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45657056	45657056	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	90	365	0	ENST00000407780.3:c.100G>T	p.Glu34Ter	p.E34*	ENST00000407780	NM_001283052.1	34	Gag/Tag					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48951087	48951088	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	105	241	0	ENST00000267163.4:c.1251_1252delAA	p.Arg418SerfsTer9	p.R418Sfs*9	ENST00000267163	NM_000321.2	417	AAa/a					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579330	7579330	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000527-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	63	300	0	ENST00000269305.4:c.357del	p.Lys120SerfsTer3	p.K120Sfs*3	ENST00000269305	NM_001126112.2	119	gcC/gc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000488-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	25	851	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001284-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	125	518	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86672854	86672854	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001284-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	102	186	0	ENST00000274376.6:c.2341G>T	p.Glu781Ter	p.E781*	ENST00000274376	NM_002890.2	781	Gaa/Taa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117718143	117718143	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001284-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			362	88	447	0	ENST00000368508.3:c.714del	p.Lys238AsnfsTer2	p.K238Nfs*2	ENST00000368508	NM_002944.2	238	aaA/aa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32906599	32906599	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001284-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	114	444	0	ENST00000380152.3:c.984del	p.Arg329GlyfsTer20	p.R329Gfs*20	ENST00000380152		328	acT/ac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	491	382	2	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	561	414	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439250	52439275	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTTGGGAGGGCTGTGGGATGGGGC	TTGTTGGGAGGGCTGTGGGATGGGGC	-			P-0001788-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	228	394	0	ENST00000460680.1:c.967_992del	p.Ala323ThrfsTer66	p.A323Tfs*66	ENST00000460680	NM_004656.3	323	GCCCCATCCCACAGCCCTCCCAACAAa/a					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	101	467	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66727455	66727455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	146	411	0	ENST00000307102.5:c.171G>T	p.Lys57Asn	p.K57N	ENST00000307102	NM_002755.3	57	aaG/aaT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	106	344	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16202920	16202920	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	64	409	0	ENST00000375759.3:c.628A>T	p.Thr210Ser	p.T210S	ENST00000375759	NM_015001.2	210	Aca/Tca					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134911519	134911519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	64	384	0	ENST00000398015.3:c.1984C>T	p.Arg662Cys	p.R662C	ENST00000398015	NM_004441.4	662	Cgt/Tgt					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189456447	189456447	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	78	465	0	ENST00000264731.3:c.208C>T	p.Gln70Ter	p.Q70*	ENST00000264731	NM_003722.4	70	Cag/Tag					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66361157	66361157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			585	74	458	0	ENST00000273854.3:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000273854	NM_004439.5	339	Gaa/Aaa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106162495	106162495	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			401	116	336	0	ENST00000380013.4:c.3410-1G>C		p.X1137_splice	ENST00000380013	NM_001127208.2	1137						NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143067089	143067089	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	168	594	0	ENST00000262992.4:c.1624C>A	p.Leu542Met	p.L542M	ENST00000262992	NM_001101669.1	542	Ctg/Atg					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143235912	143235912	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			506	53	342	0	ENST00000262992.4:c.376C>T	p.Arg126Ter	p.R126*	ENST00000262992	NM_001101669.1	126	Cga/Tga					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38942426	38942426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			797	90	414	0	ENST00000357387.3:c.5107G>A	p.Asp1703Asn	p.D1703N	ENST00000357387	NM_152756.3	1703	Gat/Aat					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56174918	56174918	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	67	324	0	ENST00000399503.3:c.2077G>C	p.Asp693His	p.D693H	ENST00000399503	NM_005921.1	693	Gat/Cat					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589219	67589219	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	86	478	0	ENST00000274335.5:c.1207G>A	p.Glu403Lys	p.E403K	ENST00000274335		403	Gaa/Aaa					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26031891	26031891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	59	187	0	ENST00000244661.2:c.398G>A	p.Gly133Glu	p.G133E	ENST00000244661	NM_003537.3	133	gGa/gAa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2983881	2983881	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	117	500	0	ENST00000396946.4:c.649A>T	p.Met217Leu	p.M217L	ENST00000396946	NM_032415.4	217	Atg/Ttg					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81334708	81334708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			708	79	553	0	ENST00000222390.5:c.2008G>A	p.Glu670Lys	p.E670K	ENST00000222390	NM_000601.4	670	Gag/Aag					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145737311	145737311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			669	81	418	0	ENST00000428558.2:c.3376G>A	p.Glu1126Lys	p.E1126K	ENST00000428558	NM_004260.3	1126	Gag/Aag					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741427	17741427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	55	390	0	ENST00000250003.3:c.98C>T	p.Pro33Leu	p.P33L	ENST00000250003	NM_002478.4	33	cCg/cTg					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	74	378	0	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30264509	30264509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	26	146	0	ENST00000322652.5:c.244G>A	p.Asp82Asn	p.D82N	ENST00000322652	NM_015355.2	82	Gac/Aac					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7119503	7119503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	77	566	0	ENST00000302850.5:c.3751G>C	p.Asp1251His	p.D1251H	ENST00000302850	NM_000208.2	1251	Gat/Cat					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17951100	17951100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			389	70	369	0	ENST00000458235.1:c.1193C>G	p.Ser398Cys	p.S398C	ENST00000458235	NM_000215.3	398	tCc/tGc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40713427	40713427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	63	352	0	ENST00000373198.4:c.4088G>A	p.Arg1363Gln	p.R1363Q	ENST00000373198	NM_133170.3	1363	cGg/cAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40735506	40735506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	51	412	0	ENST00000373198.4:c.3367G>A	p.Ala1123Thr	p.A1123T	ENST00000373198	NM_133170.3	1123	Gcc/Acc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602581	10602581	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	26	325	0	ENST00000171111.5:c.997G>T	p.Gly333Cys	p.G333C	ENST00000171111	NM_203500.1	333	Ggc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	52	437	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0000807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	16	172	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189582180	189582180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	23	245	0	ENST00000264731.3:c.739C>A	p.His247Asn	p.H247N	ENST00000264731	NM_003722.4	247	Cat/Aat					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88472559	88472559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	26	396	0	ENST00000360948.2:c.1996G>T	p.Gly666Cys	p.G666C	ENST00000360948	NM_001012338.2	666	Ggt/Tgt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	135	397	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12037408	12037408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000569-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	111	298	0	ENST00000396373.4:c.1039C>T	p.Gln347Ter	p.Q347*	ENST00000396373	NM_001987.4	347	Cag/Tag					NEWRECORD																																																																									
CD79B	0	MSKCC	GRCh37	17	62007475	62007475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	362	376	0	ENST00000392795.3:c.392C>T	p.Ser131Leu	p.S131L	ENST00000392795	NM_001039933.1	131	tCg/tTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001172-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			491	35	354	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68844174	68844174	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001172-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			616	57	389	0	ENST00000261769.5:c.762T>A	p.Asp254Glu	p.D254E	ENST00000261769	NM_004360.3	254	gaT/gaA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	99	193	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	144	96	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	97	185	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120495	70120505	+	frameshift_variant	Frame_Shift_Del	DEL	ACAACCCGTCT	ACAACCCGTCT	-			P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	255	215	0	ENST00000245479.2:c.1500_1510del	p.Gln500HisfsTer74	p.Q500Hfs*74	ENST00000245479	NM_000346.3	499	gaACAACCCGTCTac/gaac					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061414	38061414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	153	146	0	ENST00000250448.2:c.575C>T	p.Thr192Met	p.T192M	ENST00000250448	NM_004496.3	192	aCg/aTg					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412941	63412941	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	337	289	0	ENST00000330258.3:c.226G>T	p.Gly76Ter	p.G76*	ENST00000330258	NM_152424.3	76	Gga/Tga					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70352972	70352972	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	122	233	1	ENST00000374080.3:c.4528-1G>C		p.X1510_splice	ENST00000374080		1510						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175786	112175786	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	60	123	0	ENST00000257430.4:c.4496del	p.Gly1499AspfsTer8	p.G1499Dfs*8	ENST00000257430	NM_000038.5	1499	Gga/ga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	213	307	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67200631	67200631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	100	224	0	ENST00000312629.5:c.742C>T	p.Arg248Trp	p.R248W	ENST00000312629	NM_003952.2	248	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0004159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	117	225	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106228	27106228	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	75	191	0	ENST00000324856.7:c.5839C>T	p.Gln1947Ter	p.Q1947*	ENST00000324856	NM_006015.4	1947	Cag/Tag					NEWRECORD																																																																									
HIST1H3E	0	MSKCC	GRCh37	6	26225698	26225698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1171	186	750	1	ENST00000360408.1:c.316G>A	p.Glu106Lys	p.E106K	ENST00000360408	NM_003532.2	106	Gag/Aag					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625158	69625158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	138	276	0	ENST00000334134.2:c.635G>A	p.Arg212Gln	p.R212Q	ENST00000334134	NM_005247.2	212	cGg/cAg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32929213	32929213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1339	168	515	0	ENST00000380152.3:c.7223C>A	p.Pro2408Gln	p.P2408Q	ENST00000380152		2408	cCa/cAa					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89350635	89350635	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1297	174	745	0	ENST00000301030.4:c.2315G>A	p.Arg772Gln	p.R772Q	ENST00000301030	NM_001256183.1	772	cGg/cAg					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7976483	7976483	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	69	210	0	ENST00000319144.4:c.1909C>T	p.Arg637Ter	p.R637*	ENST00000319144	NM_001139.2	637	Cga/Tga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0001752-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	49	394	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3788651	3788651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001752-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			656	83	483	0	ENST00000262367.5:c.4303G>A	p.Asp1435Asn	p.D1435N	ENST00000262367	NM_004380.2	1435	Gat/Aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001634-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	106	635	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	200	253	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412905	49412905	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	166	426	0	ENST00000418115.1:c.118G>C	p.Glu40Gln	p.E40Q	ENST00000418115	NM_001664.2	40	Gag/Cag					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242793365	242793365	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	261	261	0	ENST00000334409.5:c.712C>A	p.Pro238Thr	p.P238T	ENST00000334409	NM_005018.2	238	Ccc/Acc					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56111663	56111663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	143	153	0	ENST00000399503.3:c.263C>G	p.Ser88Trp	p.S88W	ENST00000399503	NM_005921.1	88	tCg/tGg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112111363	112111363	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	103	308	0	ENST00000257430.4:c.460G>C	p.Glu154Gln	p.E154Q	ENST00000257430	NM_000038.5	154	Gaa/Caa					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	401928	401928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	124	383	0	ENST00000399788.2:c.4863C>A	p.Asp1621Glu	p.D1621E	ENST00000399788	NM_001042603.1	1621	gaC/gaA					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78727843	78727843	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	245	355	0	ENST00000306801.3:c.688C>G	p.Gln230Glu	p.Q230E	ENST00000306801	NM_020761.2	230	Cag/Gag					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18266723	18266723	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	184	173	0	ENST00000222254.8:c.34C>G	p.Leu12Val	p.L12V	ENST00000222254	NM_005027.3	12	Ctg/Gtg					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50912463	50912463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	252	390	0	ENST00000440232.2:c.1977C>G	p.Ile659Met	p.I659M	ENST00000440232	NM_002691.3	659	atC/atG					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30057303	30057303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	99	257	0	ENST00000338641.4:c.785G>A	p.Arg262Gln	p.R262Q	ENST00000338641	NM_000268.3	262	cGa/cAa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41565509	41565509	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	103	326	0	ENST00000263253.7:c.4175G>A	p.Arg1392Lys	p.R1392K	ENST00000263253	NM_001429.3	1392	aGa/aAa					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007805	45007810	+	inframe_deletion	In_Frame_Del	DEL	CTTGTA	CTTGTA	-			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	92	235	0	ENST00000558401.1:c.254_259del	p.Leu85_Tyr86del	p.L85_Y86del	ENST00000558401	NM_004048.2	84	ctCTTGTAc/ctc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66280012	66280012	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	119	299	0	ENST00000273854.3:c.1677del	p.Thr560ProfsTer15	p.T560Pfs*15	ENST00000273854	NM_004439.5	559	acC/ac					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123197751	123197759	+	inframe_deletion	In_Frame_Del	DEL	TACAGATGT	TACAGATGT	-			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			25	166	249	0	ENST00000218089.9:c.1876_1884del	p.Thr626_Val628del	p.T626_V628del	ENST00000218089	NM_001042749.1	625	gaTACAGATGTt/gat					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153268223	153268224	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	AC	AC	CA			P-0004410-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			31	108	144	0	ENST00000281708.4:c.585-1_585delinsTG		p.X195_splice	ENST00000281708	NM_033632.3	195						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002524-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			273	395	403	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0002524-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			190	62	315	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0002524-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			313	14	444	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398255	25398255	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002524-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			334	10	449	0	ENST00000256078.4:c.64C>A	p.Gln22Lys	p.Q22K	ENST00000256078	NM_033360.2	22	Cag/Aag					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41400182	41400182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002524-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			253	34	352	0	ENST00000373198.4:c.577C>T	p.Pro193Ser	p.P193S	ENST00000373198	NM_133170.3	193	Cct/Tct					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16199350	16199350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			872	53	605	1	ENST00000375759.3:c.123G>T	p.Arg41Ser	p.R41S	ENST00000375759	NM_015001.2	41	agG/agT					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25965734	25965734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			781	56	644	0	ENST00000435504.4:c.3472G>A	p.Ala1158Thr	p.A1158T	ENST00000435504		1158	Gcc/Acc					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242793392	242793392	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	37	516	0	ENST00000334409.5:c.685C>T	p.Gln229Ter	p.Q229*	ENST00000334409	NM_005018.2	229	Cag/Tag					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294373	1294373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	25	309	0	ENST00000310581.5:c.628G>A	p.Ala210Thr	p.A210T	ENST00000310581	NM_198253.2	210	Gcc/Acc					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149513316	149513316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	26	405	0	ENST00000261799.4:c.767G>T	p.Arg256Leu	p.R256L	ENST00000261799	NM_002609.3	256	cGg/cTg					NEWRECORD																																																																									
HGF	3082	MSKCC	GRCh37	7	81386589	81386589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			782	50	503	0	ENST00000222390.5:c.398G>A	p.Gly133Glu	p.G133E	ENST00000222390	NM_000601.4	133	gGa/gAa					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135771774	135771774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			855	46	720	0	ENST00000298552.3:c.3343G>A	p.Glu1115Lys	p.E1115K	ENST00000298552	NM_001162426.1	1115	Gag/Aag					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43620417	43620417	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	33	343	0	ENST00000355710.3:c.3026T>A	p.Met1009Lys	p.M1009K	ENST00000355710	NM_020975.4	1009	aTg/aAg					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78765301	78765301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			755	58	509	0	ENST00000306801.3:c.882G>C	p.Leu294Phe	p.L294F	ENST00000306801	NM_020761.2	294	ttG/ttC					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11138459	11138459	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	33	390	0	ENST00000344626.4:c.3216-1G>T		p.X1072_splice	ENST00000344626	NM_003072.3	1072						NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176523697	176523697	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	34	626	0	ENST00000292408.4:c.2110del	p.Glu704ArgfsTer18	p.E704Rfs*18	ENST00000292408	NM_213647.1	703	cGg/cg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139393428	139393429	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0001833-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	76	470	0	ENST00000277541.6:c.6102_6103delinsTT	p.Trp2034_Ala2035delinsCysSer	p.W2034_A2035delinsCS	ENST00000277541	NM_017617.3	2034	tgGGcc/tgTTcc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001411-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1361	169	413	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0001411-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1010	127	395	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371639	55371639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001411-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	58	396	0	ENST00000297316.4:c.329C>T	p.Thr110Met	p.T110M	ENST00000297316	NM_022454.3	110	aCg/aTg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32905069	32905069	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001411-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			863	96	242	0	ENST00000380152.3:c.695A>G	p.Tyr232Cys	p.Y232C	ENST00000380152		232	tAt/tGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			62	91	367	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5231357	5231357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	93	657	0	ENST00000357368.4:c.2119G>A	p.Glu707Lys	p.E707K	ENST00000357368	NM_002850.3	707	Gag/Aag					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115875	8115879	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCT	GCCCT	-			P-0001489-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	96	676	0	ENST00000346208.3:c.1221_1225delGCCCT	p.Pro408GlnfsTer97	p.P408Qfs*97	ENST00000346208		407	tcGCCCTtc/tctc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	189	258	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			666	207	222	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	229	330	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16254644	16254644	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1043	387	325	0	ENST00000375759.3:c.1909C>T	p.Arg637Ter	p.R637*	ENST00000375759	NM_015001.2	637	Cga/Tga					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057642	27057642	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0001583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			993	311	327	0	ENST00000324856.7:c.1351-1G>C		p.X451_splice	ENST00000324856	NM_006015.4	451						NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0001583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	212	253	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52702600	52702600	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	289	293	0	ENST00000394830.3:c.298A>T	p.Lys100Ter	p.K100*	ENST00000394830	NM_018313.4	100	Aaa/Taa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178938835	178938835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			41	44	12	0	ENST00000263967.3:c.2077C>T	p.Arg693Cys	p.R693C	ENST00000263967	NM_006218.2	693	Cgt/Tgt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66280022	66280022	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			739	245	282	0	ENST00000273854.3:c.1667A>C	p.Glu556Ala	p.E556A	ENST00000273854	NM_004439.5	556	gAg/gCg					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4387986	4387986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			925	347	281	0	ENST00000261254.3:c.472G>A	p.Asp158Asn	p.D158N	ENST00000261254	NM_001759.3	158	Gac/Aac					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125251	47125260	+	frameshift_variant	Frame_Shift_Del	DEL	CACTTATATC	CACTTATATC	-			P-0001583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	215	352	0	ENST00000409792.3:c.6010_6019delGATATAAGTG	p.Asp2004IlefsTer13	p.D2004Ifs*13	ENST00000409792	NM_014159.6	2004	GATATAAGTGat/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002592-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	506	381	0	ENST00000269305.4:c.764T>A	p.Ile255Asn	p.I255N	ENST00000269305	NM_001126112.2	255	aTc/aAc					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47693929	47693929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002592-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			714	350	516	0	ENST00000233146.2:c.1643G>T	p.Gly548Val	p.G548V	ENST00000233146	NM_000251.2	548	gGt/gTt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49447793	49447793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002592-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	248	297	0	ENST00000301067.7:c.641G>A	p.Cys214Tyr	p.C214Y	ENST00000301067	NM_003482.3	214	tGc/tAc					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91334069	91334069	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002592-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	147	354	1	ENST00000355112.3:c.3014T>C	p.Ile1005Thr	p.I1005T	ENST00000355112	NM_000057.2	1005	aTa/aCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002639-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	107	169	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101660	27101661	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0002639-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			752	43	203	0	ENST00000324856.7:c.4942_4943delinsAA	p.Ala1648Asn	p.A1648N	ENST00000324856	NM_006015.4	1648	GCc/AAc					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138665131	138665131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002639-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	47	149	0	ENST00000330315.3:c.434G>T	p.Arg145Leu	p.R145L	ENST00000330315	NM_023067.3	145	cGc/cTc					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189612091	189612091	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002639-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			904	128	245	0	ENST00000264731.3:c.1843C>G	p.His615Asp	p.H615D	ENST00000264731	NM_003722.4	615	Cat/Gat					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66535351	66535351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002639-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	93	166	0	ENST00000273854.3:c.110G>T	p.Arg37Leu	p.R37L	ENST00000273854	NM_004439.5	37	cGg/cTg					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473762	67473762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002639-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			563	98	225	0	ENST00000327367.4:c.842C>A	p.Ala281Glu	p.A281E	ENST00000327367	NM_005902.3	281	gCa/gAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002639-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	91	168	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610127	10610127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002639-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	121	247	0	ENST00000171111.5:c.583G>C	p.Gly195Arg	p.G195R	ENST00000171111	NM_203500.1	195	Ggc/Cgc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39913566	39913566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002639-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			952	68	275	0	ENST00000378444.4:c.4762G>T	p.Gly1588Cys	p.G1588C	ENST00000378444	NM_001123385.1	1588	Ggt/Tgt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937114	76937114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002639-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			699	240	269	0	ENST00000373344.5:c.3634G>A	p.Asp1212Asn	p.D1212N	ENST00000373344	NM_000489.3	1212	Gat/Aat					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11152095	11152095	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002639-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			627	94	219	1	ENST00000344626.4:c.4285del	p.Arg1429AlafsTer34	p.R1429Afs*34	ENST00000344626	NM_003072.3	1428	aCc/ac					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15353717	15353717	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	94	415	0	ENST00000263377.2:c.3163T>C	p.Ser1055Pro	p.S1055P	ENST00000263377	NM_058243.2	1055	Tca/Cca					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30680854	30680854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	237	490	0	ENST00000376406.3:c.865C>G	p.Leu289Val	p.L289V	ENST00000376406	NM_014641.2	289	Ctg/Gtg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118360844	118360844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0003852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	34	161	0	ENST00000534358.1:c.4576A>T	p.Ile1526Phe	p.I1526F	ENST00000534358	NM_005933.3	1526	Atc/Ttc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	173	334	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344320	118344320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	52	612	0	ENST00000534358.1:c.2446C>T	p.Pro816Ser	p.P816S	ENST00000534358	NM_005933.3	816	Cca/Tca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	133	879	0	ENST00000269305.4:c.581T>C	p.Leu194Pro	p.L194P	ENST00000269305	NM_001126112.2	194	cTt/cCt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29676263	29676263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001877-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	179	624	0	ENST00000358273.4:c.7316del	p.Leu2439Ter	p.L2439*	ENST00000358273	NM_001042492.2	2439	Tta/ta					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579310	7579310	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0000335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	36	316	0	ENST00000269305.4:c.375+2T>G		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50444452	50444452	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000335-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	80	168	0	ENST00000331340.3:c.382G>A	p.Gly128Arg	p.G128R	ENST00000331340	NM_006060.4	128	Ggg/Agg					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0003307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	204	300	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	626	392	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142232374	142232374	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0002188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			885	216	359	0	ENST00000350721.4:c.4610T>A	p.Leu1537Ter	p.L1537*	ENST00000350721	NM_001184.3	1537	tTa/tAa					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625080	69625080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	51	196	0	ENST00000334134.2:c.713C>T	p.Ala238Val	p.A238V	ENST00000334134	NM_005247.2	238	gCg/gTg					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31374366	31374366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			509	163	388	0	ENST00000328111.2:c.365G>A	p.Arg122His	p.R122H	ENST00000328111	NM_006892.3	122	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579345	7579364	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGAAGCCCAGACGGAAAC	CAAGAAGCCCAGACGGAAAC	-			P-0002188-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			124	344	318	0	ENST00000269305.4:c.323_342del	p.Gly108AlafsTer34	p.G108Afs*34	ENST00000269305	NM_001126112.2	108	gGTTTCCGTCTGGGCTTCTTG/g					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	253	382	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178879	112178879	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	79	319	0	ENST00000257430.4:c.7588C>T	p.Arg2530Trp	p.R2530W	ENST00000257430	NM_000038.5	2530	Cgg/Tgg					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98209286	98209286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1378	187	662	0	ENST00000331920.6:c.4252G>A	p.Val1418Ile	p.V1418I	ENST00000331920	NM_000264.3	1418	Gtc/Atc					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77047135	77047135	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			923	133	436	0	ENST00000356341.3:c.1409T>A	p.Leu470Gln	p.L470Q	ENST00000356341	NM_002576.4	470	cTg/cAg					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			510	260	402	1	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			382	195	278	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174693	112174697	+	frameshift_variant	Frame_Shift_Del	DEL	CTATG	CTATG	-			P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	189	274	0	ENST00000257430.4:c.3402_3406delCTATG	p.Asp1134GlufsTer3	p.D1134Efs*3	ENST00000257430	NM_000038.5	1134	gaCTATGaa/gaaa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0000241-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			762	101	419	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	148	314	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439780	52439780	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0001050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	143	619	0	ENST00000460680.1:c.931+1G>A		p.X311_splice	ENST00000460680	NM_004656.3	311						NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56438305	56438305	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001050-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	23	266	0	ENST00000407977.2:c.688G>T	p.Asp230Tyr	p.D230Y	ENST00000407977		230	Gat/Tat					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40363378	40363378	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000037-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			629	124	497	0	ENST00000397332.2:c.851T>G	p.Ile284Ser	p.I284S	ENST00000397332	NM_001033082.2	284	aTt/aGt					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133202730	133202730	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000037-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			650	145	532	0	ENST00000320574.5:c.6504C>G	p.Asp2168Glu	p.D2168E	ENST00000320574	NM_006231.2	2168	gaC/gaG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000037-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			293	230	388	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15960850	15960850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000037-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			307	118	408	1	ENST00000268712.3:c.6370C>A	p.Leu2124Ile	p.L2124I	ENST00000268712	NM_006311.3	2124	Ctt/Att					NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30134441	30134441	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	17	477	0	ENST00000263025.4:c.90G>A	p.Met30Ile	p.M30I	ENST00000263025	NM_002746.2	30	atG/atA					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72831467	72831467	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	32	610	0	ENST00000268489.5:c.5114C>G	p.Ser1705Ter	p.S1705*	ENST00000268489	NM_006885.3	1705	tCa/tGa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	41	359	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44918713	44918713	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0003695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	24	160	0	ENST00000377967.4:c.1194+2T>C		p.X398_splice	ENST00000377967	NM_021140.2	398						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001677-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			523	169	302	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0001677-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			783	80	353	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	116	147	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412375	139412375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	29	164	0	ENST00000277541.6:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000277541	NM_017617.3	424	Gag/Aag					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50459530	50459530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	39	203	0	ENST00000331340.3:c.819A>C	p.Lys273Asn	p.K273N	ENST00000331340	NM_006060.4	273	aaA/aaC					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226552756	226552756	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	92	378	0	ENST00000366794.5:c.2605T>G	p.Phe869Val	p.F869V	ENST00000366794	NM_001618.3	869	Ttt/Gtt					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243727146	243727146	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	46	249	0	ENST00000263826.5:c.824A>T	p.Glu275Val	p.E275V	ENST00000263826	NM_005465.4	275	gAg/gTg					NEWRECORD																																																																									
ALK	238	MSKCC	GRCh37	2	29450509	29450509	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774004991		P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	99	430	0	ENST00000389048.3:c.2845G>A	p.Glu949Lys	p.E949K	ENST00000389048	NM_004304.4	949	Gaa/Aaa					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52637653	52637653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	100	372	0	ENST00000394830.3:c.2663C>T	p.Ser888Leu	p.S888L	ENST00000394830	NM_018313.4	888	tCa/tTa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89468391	89468391	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	90	259	0	ENST00000336596.2:c.1925T>G	p.Leu642Arg	p.L642R	ENST00000336596	NM_005233.5	642	cTt/cGt					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670223	134670223	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	146	241	0	ENST00000398015.3:c.134T>G	p.Val45Gly	p.V45G	ENST00000398015	NM_004441.4	45	gTc/gGc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467712	66467712	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	105	347	0	ENST00000273854.3:c.557T>G	p.Leu186Arg	p.L186R	ENST00000273854	NM_004439.5	186	cTt/cGt					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30673157	30673157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	62	253	0	ENST00000376406.3:c.3803C>T	p.Ala1268Val	p.A1268V	ENST00000376406	NM_014641.2	1268	gCt/gTt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49442946	49442946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	52	283	0	ENST00000301067.7:c.3962G>C	p.Gly1321Ala	p.G1321A	ENST00000301067	NM_003482.3	1321	gGa/gCa					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56348473	56348473	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	112	815	0	ENST00000348428.3:c.281A>C	p.Lys94Thr	p.K94T	ENST00000348428	NM_006785.3	94	aAg/aCg					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48650817	48650818	+	missense_variant	Missense_Mutation	DNP	GC	GC	TG			P-0004116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	202	397	0	ENST00000376670.3:c.686_687delGCinsTG	p.Gly229Val	p.G229V	ENST00000376670	NM_002049.3	229	gGC/gTG					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002306-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	60	521	0	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108159726	108159726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002306-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	46	573	0	ENST00000278616.4:c.4132C>T	p.Pro1378Ser	p.P1378S	ENST00000278616	NM_000051.3	1378	Cca/Tca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577525	7577527	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0002306-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			806	45	368	0	ENST00000269305.4:c.754_756del	p.Leu252del	p.L252del	ENST00000269305	NM_001126112.2	252	CTC/-					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227660371	227660371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	40	126	0	ENST00000305123.5:c.3084G>T	p.Arg1028Ser	p.R1028S	ENST00000305123	NM_005544.2	1028	agG/agT					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89462338	89462338	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	75	298	0	ENST00000336596.2:c.1810N>T	p.Asp604Tyr	p.D604Y	ENST00000336596	NM_005233.5	604	Gac/Tac					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670265	134670265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	141	260	0	ENST00000398015.3:c.176A>T	p.Gln59Leu	p.Q59L	ENST00000398015	NM_004441.4	59	cAg/cTg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467970	66467970	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	74	317	0	ENST00000273854.3:c.299A>T	p.Gln100Leu	p.Q100L	ENST00000273854	NM_004439.5	100	cAa/cTa					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176636850	176636850	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	111	291	0	ENST00000439151.2:c.1450G>T	p.Glu484Ter	p.E484*	ENST00000439151	NM_022455.4	484	Gaa/Taa					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27778080	27778080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1512	199	664	0	ENST00000369163.2:c.229C>A	p.Gln77Lys	p.Q77K	ENST00000369163	NM_003536.2	77	Cag/Aag					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2972169	2972169	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	38	210	0	ENST00000396946.4:c.1570G>T	p.Ala524Ser	p.A524S	ENST00000396946	NM_032415.4	524	Gcc/Tcc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509630	106509630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	139	323	0	ENST00000359195.3:c.1624C>T	p.Arg542Trp	p.R542W	ENST00000359195	NM_002649.2	542	Cgg/Tgg					NEWRECORD																																																																									
RHEB	0	MSKCC	GRCh37	7	151181876	151181876	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1571	155	452	1	ENST00000262187.5:c.139A>G	p.Ile47Val	p.I47V	ENST00000262187	NM_005614.3	47	Atc/Gtc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878887	151878887	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	56	234	0	ENST00000262189.6:c.6058C>A	p.Gln2020Lys	p.Q2020K	ENST00000262189	NM_170606.2	2020	Caa/Aaa					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5044413	5044413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	104	382	0	ENST00000381652.3:c.361C>G	p.Pro121Ala	p.P121A	ENST00000381652	NM_004972.3	121	Cct/Gct					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484335	8484335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	80	301	0	ENST00000356435.5:c.3197G>T	p.Arg1066Leu	p.R1066L	ENST00000356435		1066	cGa/cTa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8485807	8485807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	71	263	0	ENST00000356435.5:c.3010C>A	p.Pro1004Thr	p.P1004T	ENST00000356435		1004	Cca/Aca					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8486143	8486143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	81	348	0	ENST00000356435.5:c.2674G>A	p.Val892Ile	p.V892I	ENST00000356435		892	Gtc/Atc					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760961	133760961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	101	400	1	ENST00000318560.5:c.3284G>A	p.Arg1095Gln	p.R1095Q	ENST00000318560	NM_005157.4	1095	cGg/cAg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115937	8115937	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	145	186	0	ENST00000346208.3:c.1283T>A	p.Leu428Gln	p.L428Q	ENST00000346208		428	cTg/cAg					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69458635	69458635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	84	274	0	ENST00000227507.2:c.450G>T	p.Trp150Cys	p.W150C	ENST00000227507	NM_053056.2	150	tgG/tgT					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69458654	69458654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	98	305	0	ENST00000227507.2:c.469C>T	p.Pro157Ser	p.P157S	ENST00000227507	NM_053056.2	157	Ccg/Tcg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18644460	18644460	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	91	330	0	ENST00000266497.5:c.2638C>A	p.Pro880Thr	p.P880T	ENST00000266497		880	Cct/Act					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21549216	21549216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	133	497	0	ENST00000382592.4:c.3060G>T	p.Lys1020Asn	p.K1020N	ENST00000382592	NM_014572.2	1020	aaG/aaT					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28886210	28886210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	70	291	0	ENST00000282397.4:c.3412C>A	p.His1138Asn	p.H1138N	ENST00000282397	NM_002019.4	1138	Cac/Aac					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610593	81610593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	94	347	0	ENST00000298171.2:c.2191G>T	p.Gly731Cys	p.G731C	ENST00000298171	NM_000369.2	731	Ggt/Tgt					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95579541	95579541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	56	170	0	ENST00000343455.3:c.1928G>T	p.Ser643Ile	p.S643I	ENST00000343455	NM_177438.2	643	aGt/aTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	98	232	1	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56400681	56400681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	146	541	0	ENST00000348428.3:c.1275G>T	p.Met425Ile	p.M425I	ENST00000348428	NM_006785.3	425	atG/atT					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9543632	9543632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	70	351	0	ENST00000353224.5:c.1522G>T	p.Asp508Tyr	p.D508Y	ENST00000353224	NM_177990.2	508	Gac/Tac					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546958	9546958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	31	123	0	ENST00000353224.5:c.1064C>T	p.Ala355Val	p.A355V	ENST00000353224	NM_177990.2	355	gCc/gTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40730802	40730802	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	49	224	0	ENST00000373198.4:c.3733G>T	p.Gly1245Ter	p.G1245*	ENST00000373198	NM_133170.3	1245	Gga/Tga					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48652279	48652279	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	135	497	0	ENST00000376670.3:c.950G>T	p.Arg317Leu	p.R317L	ENST00000376670	NM_002049.3	317	cGg/cTg					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412682	63412682	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	87	316	0	ENST00000330258.3:c.485T>A	p.Met162Lys	p.M162K	ENST00000330258	NM_152424.3	162	aTg/aAg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765470	66765470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	74	330	0	ENST00000374690.3:c.482C>A	p.Pro161Gln	p.P161Q	ENST00000374690	NM_000044.3	161	cCa/cAa					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765898	66765898	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	64	372	0	ENST00000374690.3:c.910G>T	p.Glu304Ter	p.E304*	ENST00000374690	NM_000044.3	304	Gaa/Taa					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766187	66766187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	56	141	0	ENST00000374690.3:c.1199C>T	p.Ala400Val	p.A400V	ENST00000374690	NM_000044.3	400	gCg/gTg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70345955	70345955	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	95	468	0	ENST00000374080.3:c.2492C>T	p.Ala831Val	p.A831V	ENST00000374080		831	gCt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002970-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	168	365	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0002970-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1138	133	395	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713559	30713559	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002970-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	200	315	0	ENST00000359013.4:c.959C>G	p.Ser320Ter	p.S320*	ENST00000359013	NM_001024847.2	320	tCa/tGa					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61719737	61719737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002970-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1239	311	634	0	ENST00000401558.2:c.1531G>A	p.Glu511Lys	p.E511K	ENST00000401558	NM_003400.3	511	Gag/Aag					NEWRECORD																																																																									
FIP1L1	0	MSKCC	GRCh37	4	54280808	54280808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002970-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1074	92	455	0	ENST00000337488.6:c.842C>G	p.Thr281Arg	p.T281R	ENST00000337488	NM_030917.3	281	aCa/aGa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187540343	187540343	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002970-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			769	326	398	0	ENST00000441802.2:c.7397C>G	p.Ser2466Ter	p.S2466*	ENST00000441802	NM_005245.3	2466	tCa/tGa					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176671232	176671232	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002970-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			981	327	538	0	ENST00000439151.2:c.4339G>T	p.Glu1447Ter	p.E1447*	ENST00000439151	NM_022455.4	1447	Gaa/Taa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38064170	38064170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002970-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1082	152	458	0	ENST00000250448.2:c.8G>A	p.Gly3Glu	p.G3E	ENST00000250448	NM_004496.3	3	gGa/gAa					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3820792	3820792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002970-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			972	91	422	0	ENST00000262367.5:c.2659C>G	p.Gln887Glu	p.Q887E	ENST00000262367	NM_004380.2	887	Cag/Gag					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3820954	3820954	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002970-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	56	207	0	ENST00000262367.5:c.2497C>G	p.Leu833Val	p.L833V	ENST00000262367	NM_004380.2	833	Ctc/Gtc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76888799	76888799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002970-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			638	331	350	2	ENST00000373344.5:c.5030G>A	p.Gly1677Asp	p.G1677D	ENST00000373344	NM_000489.3	1677	gGt/gAt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556301	29556308	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGTCAG	CCTGTCAG	-			P-0000199-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			106	145	500	0	ENST00000358273.4:c.2669_2676delCTGTCAGC	p.Pro890GlnfsTer13	p.P890Qfs*13	ENST00000358273	NM_001042492.2	890	CCTGTCAGc/c					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000868-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	284	189	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212288967	212288967	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000868-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	52	197	0	ENST00000342788.4:c.2779C>T	p.Arg927Ter	p.R927*	ENST00000342788	NM_005235.2	927	Cga/Tga					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55569944	55569944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000868-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	69	124	0	ENST00000288135.5:c.811C>T	p.Arg271Cys	p.R271C	ENST00000288135	NM_000222.2	271	Cgt/Tgt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0000868-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	145	155	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40748580	40748580	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000868-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			845	84	96	0	ENST00000373198.4:c.2936C>G	p.Thr979Ser	p.T979S	ENST00000373198	NM_133170.3	979	aCt/aGt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1052	139	282	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0002890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			534	507	296	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149502650	149502650	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	47	188	0	ENST00000261799.4:c.2138C>T	p.Ala713Val	p.A713V	ENST00000261799	NM_002609.3	713	gCg/gTg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			613	116	275	0	ENST00000342988.3:c.431C>A	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tAa					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18279325	18279325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	135	198	0	ENST00000222254.8:c.1777G>A	p.Glu593Lys	p.E593K	ENST00000222254	NM_005027.3	593	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577089	7577090	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0002890-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	143	366	1	ENST00000269305.4:c.848_849delGC	p.Arg283HisfsTer22	p.R283Hfs*22	ENST00000269305	NM_001126112.2	283	cGC/c					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29588785	29588789	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTG	ACCTG	-			P-0002588-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			97	65	333	0	ENST00000358273.4:c.4634_4638del	p.Tyr1545TrpfsTer17	p.Y1545Wfs*17	ENST00000358273	NM_001042492.2	1545	tACCTG/t					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579398	7579398	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	117	337	0	ENST00000269305.4:c.289del	p.Val97SerfsTer26	p.V97Sfs*26	ENST00000269305	NM_001126112.2	97	Gtc/tc					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	37015055	37015055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000995-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			695	165	366	0	ENST00000358127.4:c.349C>T	p.Arg117Trp	p.R117W	ENST00000358127	NM_001280556.1	117	Cgg/Tgg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44919324	44919324	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000995-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			249	51	144	0	ENST00000377967.4:c.1252A>G	p.Ser418Gly	p.S418G	ENST00000377967	NM_021140.2	418	Agt/Ggt					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110434593	110434595	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0000995-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	32	163	2	ENST00000375856.3:c.3806_3808del	p.Gln1269del	p.Q1269del	ENST00000375856	NM_003749.2	1269	cAGCcg/ccg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108225544	108225544	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001038-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	411	370	0	ENST00000278616.4:c.8793T>G	p.Cys2931Trp	p.C2931W	ENST00000278616	NM_000051.3	2931	tgT/tgG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574006	7574011	+	inframe_deletion	In_Frame_Del	DEL	ACATCT	ACATCT	-			P-0001038-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	349	507	0	ENST00000269305.4:c.1016_1021del	p.Glu339_Phe341delinsVal	p.E339_F341delinsV	ENST00000269305	NM_001126112.2	339	gAGATGTtc/gtc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001165-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			213	543	397	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0001165-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	297	279	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76845384	76845384	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001165-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			687	628	630	0	ENST00000373344.5:c.6137C>A	p.Ser2046Tyr	p.S2046Y	ENST00000373344	NM_000489.3	2046	tCt/tAt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720857	89720857	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001011-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			157	47	109	1	ENST00000371953.3:c.1008C>G	p.Tyr336Ter	p.Y336*	ENST00000371953	NM_000314.4	336	taC/taG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001011-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	67	203	0	ENST00000269305.4:c.398T>A	p.Met133Lys	p.M133K	ENST00000269305	NM_001126112.2	133	aTg/aAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175118	112175118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	19	173	0	ENST00000257430.4:c.3827C>A	p.Ser1276Ter	p.S1276*	ENST00000257430	NM_000038.5	1276	tCa/tAa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157519961	157519961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	55	347	0	ENST00000346085.5:c.4030C>T	p.Gln1344Ter	p.Q1344*	ENST00000346085	NM_020732.3	1344	Cag/Tag					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114920449	114920449	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0003397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	47	477	0	ENST00000543371.1:c.1390A>G	p.Arg464Gly	p.R464G	ENST00000543371	NM_001198531.1	464	Agg/Ggg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	323	342	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0002724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	210	561	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5212464	5212464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			780	284	484	0	ENST00000357368.4:c.4653G>T	p.Gln1551His	p.Q1551H	ENST00000357368	NM_002850.3	1551	caG/caT					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175561	112175561	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002724-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	378	473	0	ENST00000257430.4:c.4271del	p.Pro1424GlnfsTer49	p.P1424Qfs*49	ENST00000257430	NM_000038.5	1424	Cca/ca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	394	422	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430522	181430522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1344	147	388	0	ENST00000325404.1:c.374A>G	p.Tyr125Cys	p.Y125C	ENST00000325404	NM_003106.3	125	tAc/tGc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117681045	117681045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1218	247	580	0	ENST00000368508.3:c.3575A>G	p.Asp1192Gly	p.D1192G	ENST00000368508	NM_002944.2	1192	gAt/gGt					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005276	150005276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			853	486	558	0	ENST00000253339.5:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000253339		317	Cag/Tag					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2129360	2129360	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001915-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1277	171	524	1	ENST00000219476.3:c.3215G>T	p.Ser1072Ile	p.S1072I	ENST00000219476	NM_000548.3	1072	aGc/aTc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120468079	120468079	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			422	26	240	0	ENST00000256646.2:c.4360G>T	p.Asp1454Tyr	p.D1454Y	ENST00000256646	NM_024408.3	1454	Gac/Tac					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165204	47165204	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			622	36	295	0	ENST00000409792.3:c.922A>T	p.Lys308Ter	p.K308*	ENST00000409792	NM_014159.6	308	Aag/Tag					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441252	52441252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	64	267	0	ENST00000460680.1:c.518A>G	p.Tyr173Cys	p.Y173C	ENST00000460680	NM_004656.3	173	tAt/tGt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66201843	66201843	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			460	33	210	0	ENST00000273854.3:c.2659G>T	p.Val887Leu	p.V887L	ENST00000273854	NM_004439.5	887	Gtg/Ttg					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176618953	176618953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			573	42	352	0	ENST00000439151.2:c.996G>T	p.Lys332Asn	p.K332N	ENST00000439151	NM_022455.4	332	aaG/aaT					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151859522	151859522	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			606	86	314	0	ENST00000262189.6:c.11140A>G	p.Lys3714Glu	p.K3714E	ENST00000262189	NM_170606.2	3714	Aaa/Gaa					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741707	145741707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	36	255	0	ENST00000428558.2:c.796G>A	p.Glu266Lys	p.E266K	ENST00000428558	NM_004260.3	266	Gag/Aag					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77051801	77051801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			551	52	292	0	ENST00000356341.3:c.1006G>A	p.Val336Met	p.V336M	ENST00000356341	NM_002576.4	336	Gtg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	19	170	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31019426	31019426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			585	51	328	0	ENST00000375687.4:c.923T>C	p.Leu308Pro	p.L308P	ENST00000375687	NM_015338.5	308	cTa/cCa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157405828	157405828	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001093-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	26	211	0	ENST00000346085.5:c.2072del	p.Gly691GlufsTer6	p.G691Efs*6	ENST00000346085	NM_020732.3	690	acG/ac					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0003819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	304	161	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33289234	33289234	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	80	210	0	ENST00000374542.5:c.318C>A	p.Cys106Ter	p.C106*	ENST00000374542	NM_001141970.1	106	tgC/tgA					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87549075	87549075	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0003819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	71	244	0	ENST00000277120.3:c.1634-2A>T		p.X545_splice	ENST00000277120		545						NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32972848	32972848	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	41	255	0	ENST00000380152.3:c.10198A>T	p.Ser3400Cys	p.S3400C	ENST00000380152		3400	Agt/Tgt					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002959-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	33	622	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002959-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	37	698	0	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10265680	10265680	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002959-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	17	768	0	ENST00000340748.4:c.1497del	p.Phe499LeufsTer3	p.F499Lfs*3	ENST00000340748		499	ttT/tt					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134968197	134968197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	30	603	0	ENST00000398015.3:c.2710G>A	p.Asp904Asn	p.D904N	ENST00000398015	NM_004441.4	904	Gac/Aac					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	33	569	0	ENST00000349310.3:c.155T>A	p.Leu52His	p.L52H	ENST00000349310	NM_001014432.1	52	cTc/cAc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100196	27100196	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003021-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	62	343	0	ENST00000324856.7:c.3992del	p.Gln1331ArgfsTer150	p.Q1331Rfs*150	ENST00000324856	NM_006015.4	1331	cAg/cg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	56	283	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	78	258	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31387092	31387092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	253	364	2	ENST00000328111.2:c.1717C>T	p.Arg573Trp	p.R573W	ENST00000328111	NM_006892.3	573	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	130	257	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247312	153247312	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			338	80	312	0	ENST00000281708.4:c.1490T>C	p.Leu497Ser	p.L497S	ENST00000281708	NM_033632.3	497	tTg/tCg					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13971195	13971195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	126	278	0	ENST00000405192.2:c.734C>T	p.Ala245Val	p.A245V	ENST00000405192	NM_001163147.1	245	gCg/gTg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151873347	151873347	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	59	332	0	ENST00000262189.6:c.9191A>G	p.Gln3064Arg	p.Q3064R	ENST00000262189	NM_170606.2	3064	cAa/cGa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141493	11141493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			695	60	355	0	ENST00000344626.4:c.3470G>A	p.Arg1157Gln	p.R1157Q	ENST00000344626	NM_003072.3	1157	cGg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174458	112174458	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002878-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	19	284	0	ENST00000257430.4:c.3167del	p.Ile1056LysfsTer5	p.I1056Kfs*5	ENST00000257430	NM_000038.5	1056	aTa/aa					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41726624	41726624	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002800-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	86	228	0	ENST00000301178.4:c.169C>T	p.Gln57Ter	p.Q57*	ENST00000301178	NM_021913.4	57	Cag/Tag					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458146	120458146	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002800-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	84	215	0	ENST00000256646.2:c.7199del	p.Arg2400GlnfsTer16	p.R2400Qfs*16	ENST00000256646	NM_024408.3	2400	cGa/ca					NEWRECORD																																																																									
RAD52	0	MSKCC	GRCh37	12	1023653	1023676	+	inframe_deletion	In_Frame_Del	DEL	ACAGTTACAGGAGTGCTGTGCGTC	ACAGTTACAGGAGTGCTGTGCGTC	-			P-0002800-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			556	115	225	0	ENST00000358495.3:c.888_911del	p.Thr297_Val304del	p.T297_V304del	ENST00000358495	NM_134424.2	296	gtGACGCACAGCACTCCTGTAACTGTc/gtc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002800-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	76	161	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123210246	123210261	+	protein_altering_variant	In_Frame_Del	DEL	AGCATTTTGTAAGCTA	AGCATTTTGTAAGCTA	C			P-0002800-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	113	267	0	ENST00000218089.9:c.2598_2613delinsC	p.Ala867_Leu871del	p.A867_L871del	ENST00000218089	NM_001042749.1	866	gcAGCATTTTGTAAGCTA/gcC					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20490660	20490660	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0002800-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	63	152	0	ENST00000346618.3:c.1397G>C	p.Ter466SerextTer5	p.*466Sext*5	ENST00000346618	NM_001949.4	466	tGa/tCa					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143326463	143326463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001796-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	228	454	0	ENST00000262992.4:c.151G>T	p.Val51Leu	p.V51L	ENST00000262992	NM_001101669.1	51	Gtg/Ttg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154849	112154849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001796-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	161	660	2	ENST00000257430.4:c.1120C>T	p.Arg374Trp	p.R374W	ENST00000257430	NM_000038.5	374	Cgg/Tgg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100357	8100357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001796-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			788	151	727	0	ENST00000346208.3:c.331C>T	p.Pro111Ser	p.P111S	ENST00000346208		111	Ccc/Tcc					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18552600	18552600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001796-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	157	681	0	ENST00000266497.5:c.2011G>C	p.Glu671Gln	p.E671Q	ENST00000266497		671	Gaa/Caa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88476370	88476370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001796-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			471	98	566	0	ENST00000360948.2:c.1762G>A	p.Glu588Lys	p.E588K	ENST00000360948	NM_001012338.2	588	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579414	7579415	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	G			P-0001796-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	488	563	0	ENST00000269305.4:c.272_273delinsC	p.Trp91SerfsTer32	p.W91Sfs*32	ENST00000269305	NM_001126112.2	91	tGG/tC					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89805610	89805610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001749-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			895	70	312	0	ENST00000389301.3:c.4098G>T	p.Gln1366His	p.Q1366H	ENST00000389301	NM_000135.2	1366	caG/caT					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41523637	41523637	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001749-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1092	102	367	0	ENST00000263253.7:c.1053C>A	p.Cys351Ter	p.C351*	ENST00000263253	NM_001429.3	351	tgC/tgA					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81335035	81335035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002962-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			721	148	349	0	ENST00000222390.5:c.1792G>C	p.Asp598His	p.D598H	ENST00000222390	NM_000601.4	598	Gat/Cat					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28601230	28601230	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002962-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			760	144	393	0	ENST00000241453.7:c.2202T>A	p.Asn734Lys	p.N734K	ENST00000241453	NM_004119.2	734	aaT/aaA					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002962-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			788	208	459	1	ENST00000347630.2:c.397T>A	p.Phe133Ile	p.F133I	ENST00000347630	NM_001007230.1	133	Ttc/Atc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002962-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	262	288	0	ENST00000374080.3:c.3670C>G	p.Leu1224Val	p.L1224V	ENST00000374080		1224	Ctc/Gtc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0000987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	2276	341	1	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150552000	150552000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	152	586	0	ENST00000369026.2:c.7G>A	p.Gly3Ser	p.G3S	ENST00000369026	NM_021960.4	3	Ggc/Agc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8504377	8504377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	40	322	0	ENST00000356435.5:c.1706C>T	p.Ser569Leu	p.S569L	ENST00000356435		569	tCa/tTa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28886185	28886185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	39	539	0	ENST00000282397.4:c.3437G>C	p.Arg1146Thr	p.R1146T	ENST00000282397	NM_002019.4	1146	aGa/aCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000987-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	118	305	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002767-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	316	345	0	ENST00000269305.4:c.464C>A	p.Thr155Asn	p.T155N	ENST00000269305	NM_001126112.2	155	aCc/aAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	34	521	2	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412910	49412910	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004244-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	44	1262	0	ENST00000418115.1:c.113T>G	p.Val38Gly	p.V38G	ENST00000418115	NM_001664.2	38	gTg/gGg					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	55	378	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001298-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	54	192	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198288684	198288684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001298-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	38	363	0	ENST00000335508.6:c.43A>G	p.Ile15Val	p.I15V	ENST00000335508	NM_012433.2	15	Att/Gtt					NEWRECORD																																																																									
FGF4	0	MSKCC	GRCh37	11	69588836	69588836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001298-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	44	433	0	ENST00000168712.1:c.400C>T	p.Arg134Trp	p.R134W	ENST00000168712	NM_002007.2	134	Cgg/Tgg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2138571	2138571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001298-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	79	404	0	ENST00000219476.3:c.5384G>A	p.Arg1795His	p.R1795H	ENST00000219476	NM_000548.3	1795	cGc/cAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40827981	40827982	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0001298-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	10	206	0	ENST00000373198.4:c.2446_2447delGAinsAT	p.Glu816Met	p.E816M	ENST00000373198	NM_133170.3	816	GAg/ATg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106655	27106655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	73	360	0	ENST00000324856.7:c.6266T>C	p.Leu2089Pro	p.L2089P	ENST00000324856	NM_006015.4	2089	cTa/cCa					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156849143	156849143	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	71	356	0	ENST00000524377.1:c.2035G>T	p.Asp679Tyr	p.D679Y	ENST00000524377	NM_002529.3	679	Gac/Tac					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41278077	41278077	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0002558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	50	454	0	ENST00000349496.5:c.1955-2A>G		p.X652_splice	ENST00000349496	NM_001904.3	652						NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187531004	187531004	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			590	70	378	0	ENST00000441802.2:c.10019A>G	p.Tyr3340Cys	p.Y3340C	ENST00000441802	NM_005245.3	3340	tAc/tGc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207061	1207067	+	frameshift_variant	Frame_Shift_Del	DEL	TGATGGG	TGATGGG	-			P-0002558-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	65	317	0	ENST00000326873.7:c.149_155del	p.Leu50ArgfsTer12	p.L50Rfs*12	ENST00000326873	NM_000455.4	50	cTGATGGGg/cg					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	523	363	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49421897	49421897	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001493-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			746	166	493	0	ENST00000301067.7:c.14410G>C	p.Ala4804Pro	p.A4804P	ENST00000301067	NM_003482.3	4804	Gcg/Ccg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911181	32911181	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001493-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	89	488	0	ENST00000380152.3:c.2689G>T	p.Glu897Ter	p.E897*	ENST00000380152		897	Gaa/Taa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061215	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCAGCCGTTCTCGAACATGTT	GCAGCCGTTCTCGAACATGTT	-			P-0001493-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	127	481	0	ENST00000250448.2:c.754_774delAACATGTTCGAGAACGGCTGC	p.Asn252_Cys258del	p.N252_C258del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGCTGC/-					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47161856	47161856	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002253-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			666	102	459	0	ENST00000409792.3:c.4270del	p.Arg1424GlufsTer8	p.R1424Efs*8	ENST00000409792	NM_014159.6	1424	Aga/ga					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33289242	33289245	+	frameshift_variant	Frame_Shift_Del	DEL	CCGC	CCGC	-			P-0002253-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			257	128	266	0	ENST00000374542.5:c.307_310del	p.Ala103SerfsTer40	p.A103Sfs*40	ENST00000374542	NM_001141970.1	103	GCGGag/ag					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575456	64575456	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002253-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			374	177	404	0	ENST00000337652.1:c.576del	p.Asn194MetfsTer35	p.N194Mfs*35	ENST00000337652	NM_130803.2	192	ggG/gg					NEWRECORD																																																																									
RHEB	0	MSKCC	GRCh37	7	151188049	151188049	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002253-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			804	129	589	0	ENST00000262187.5:c.104A>C	p.Tyr35Ser	p.Y35S	ENST00000262187	NM_005614.3	35	tAc/tCc					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149511596	149511596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			608	39	367	0	ENST00000261799.4:c.1189C>T	p.Arg397Trp	p.R397W	ENST00000261799	NM_002609.3	397	Cgg/Tgg					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176707647	176707647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			544	56	298	0	ENST00000439151.2:c.5704G>A	p.Glu1902Lys	p.E1902K	ENST00000439151	NM_022455.4	1902	Gag/Aag					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128750874	128750874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	1696	571	0	ENST00000377970.2:c.411G>T	p.Glu137Asp	p.E137D	ENST00000377970	NM_002467.4	137	gaG/gaT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	123	257	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29685986	29685986	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			589	277	475	0	ENST00000358273.4:c.8114-1G>T		p.X2705_splice	ENST00000358273	NM_001042492.2	2705						NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41245606	41245606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			683	80	451	0	ENST00000357654.3:c.1942G>C	p.Glu648Gln	p.E648Q	ENST00000357654	NM_007294.3	648	Gaa/Caa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412015	116412035	+	inframe_deletion	In_Frame_Del	DEL	TGTAGACTACCGAGCTACTTT	TGTAGACTACCGAGCTACTTT	-			P-0001089-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			839	652	260	0	ENST00000397752.3:c.3001_3021del	p.Val1001_Phe1007del	p.V1001_F1007del	ENST00000397752	NM_000245.2	1000	tcTGTAGACTACCGAGCTACTTTt/tct					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628788	187628788	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000102-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			696	61	402	0	ENST00000441802.2:c.2194G>C	p.Val732Leu	p.V732L	ENST00000441802	NM_005245.3	732	Gtg/Ctg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000102-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			358	124	278	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac					NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22162045	22162060	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCAGGGTTCTCTGG	CCTCAGGGTTCTCTGG	-			P-0000102-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			649	35	388	0	ENST00000215832.6:c.195_210delCCAGAGAACCCTGAGG	p.Cys65TrpfsTer3	p.C65Wfs*3	ENST00000215832	NM_002745.4	65	tgCCAGAGAACCCTGAGG/tg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000102-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			648	37	327	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag					NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0003733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	11	162	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	18	215	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42058420	42058421	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0003733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	71	493	1	ENST00000219905.7:c.8140_8141delinsTT	p.Gly2714Phe	p.G2714F	ENST00000219905	NM_001164273.1	2714	GGt/TTt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000654-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	3294	435	0	ENST00000288135.5:c.2466T>G	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaG					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108155045	108155045	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000654-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			964	129	644	0	ENST00000278616.4:c.3838A>C	p.Lys1280Gln	p.K1280Q	ENST00000278616	NM_000051.3	1280	Aaa/Caa					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37628012	37628030	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATAGGTAAGTCCTATAGT	GATAGGTAAGTCCTATAGT	-			P-0000654-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			794	129	642	0	ENST00000447079.4:c.1929_1931+16delTAGGTAAGTCCTATAGTGA		p.X643_splice	ENST00000447079	NM_015083.1	643						NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227663406	227663406	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	19	128	0	ENST00000305123.5:c.49G>T	p.Gly17Cys	p.G17C	ENST00000305123	NM_005544.2	17	Ggc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001785-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			274	407	622	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022517	31022517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001785-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			356	227	360	0	ENST00000375687.4:c.2002G>T	p.Gly668Cys	p.G668C	ENST00000375687	NM_015338.5	668	Ggt/Tgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0001698-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	359	470	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16256462	16256462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001698-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			274	204	473	0	ENST00000375759.3:c.3727C>T	p.Arg1243Trp	p.R1243W	ENST00000375759	NM_015001.2	1243	Cgg/Tgg					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61706070	61706070	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001698-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			820	44	629	0	ENST00000401558.2:c.3101T>G	p.Phe1034Cys	p.F1034C	ENST00000401558	NM_003400.3	1034	tTt/tGt					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28622575	28622575	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001698-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	134	347	0	ENST00000241453.7:c.1042G>T	p.Gly348Ter	p.G348*	ENST00000241453	NM_004119.2	348	Gga/Tga					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	360063	360063	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001698-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	172	583	0	ENST00000262320.3:c.1026del	p.Ile343SerfsTer71	p.I343Sfs*71	ENST00000262320	NM_003502.3	342	ggG/gg					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86627302	86627302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003478-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	44	178	0	ENST00000274376.6:c.677T>C	p.Val226Ala	p.V226A	ENST00000274376	NM_002890.2	226	gTt/gCt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180046029	180046029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003478-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	43	96	0	ENST00000261937.6:c.2842C>T	p.Pro948Ser	p.P948S	ENST00000261937	NM_182925.4	948	Ccc/Tcc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	93	86	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	108	217	0	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087917	27087917	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142353005		P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	40	211	0	ENST00000324856.7:c.2204G>A	p.Ser735Asn	p.S735N	ENST00000324856	NM_006015.4	735	aGc/aAc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441310	52441310	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			590	268	311	0	ENST00000460680.1:c.460G>T	p.Glu154Ter	p.E154*	ENST00000460680	NM_004656.3	154	Gag/Tag					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55970899	55970899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			914	127	347	0	ENST00000263923.4:c.1898C>A	p.Ser633Tyr	p.S633Y	ENST00000263923	NM_002253.2	633	tCc/tAc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151891615	151891615	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			502	90	191	0	ENST00000262189.6:c.4417C>T	p.Gln1473Ter	p.Q1473*	ENST00000262189	NM_170606.2	1473	Cag/Tag					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8504390	8504390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	81	222	0	ENST00000356435.5:c.1693G>A	p.Glu565Lys	p.E565K	ENST00000356435		565	Gag/Aag					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125523707	125523707	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			716	113	314	0	ENST00000428830.2:c.1300G>C	p.Asp434His	p.D434H	ENST00000428830	NM_001114121.2	434	Gat/Cat					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243484	46243484	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			716	94	296	0	ENST00000334344.6:c.1837C>G	p.Gln613Glu	p.Q613E	ENST00000334344	NM_152641.2	613	Cag/Gag					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133253176	133253176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	107	299	0	ENST00000320574.5:c.865G>A	p.Glu289Lys	p.E289K	ENST00000320574	NM_006231.2	289	Gag/Aag					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2136858	2136858	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			690	89	226	0	ENST00000219476.3:c.4975C>G	p.Leu1659Val	p.L1659V	ENST00000219476	NM_000548.3	1659	Ctt/Gtt					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7166342	7166342	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			737	52	345	0	ENST00000302850.5:c.1684G>C	p.Asp562His	p.D562H	ENST00000302850	NM_000208.2	562	Gac/Cac					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39746883	39746883	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	55	126	0	ENST00000361337.2:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000361337	NM_003286.2	633	Cag/Tag					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66863117	66863117	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			956	166	535	0	ENST00000374690.3:c.1636C>T	p.His546Tyr	p.H546Y	ENST00000374690	NM_000044.3	546	Cat/Tat					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100613331	100613331	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	91	369	0	ENST00000308731.7:c.1069G>C	p.Glu357Gln	p.E357Q	ENST00000308731	NM_000061.2	357	Gag/Cag					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61147720	61147721	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0001463-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			762	94	245	0	ENST00000295025.8:c.1030_1031delinsAT	p.Glu344Met	p.E344M	ENST00000295025	NM_002908.2	344	GAg/ATg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			41	206	133	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162748512	162748512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			240	146	135	0	ENST00000367921.3:c.2426G>A	p.Gly809Glu	p.G809E	ENST00000367921	NM_006182.2	809	gGg/gAg					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113220	209113220	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			936	335	406	2	ENST00000345146.2:c.287A>T	p.Asn96Ile	p.N96I	ENST00000345146	NM_005896.2	96	aAt/aTt					NEWRECORD																																																																									
FIP1L1	0	MSKCC	GRCh37	4	54292094	54292094	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			513	114	222	0	ENST00000337488.6:c.979G>T	p.Glu327Ter	p.E327*	ENST00000337488	NM_030917.3	327	Gaa/Taa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66280008	66280008	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			357	269	258	0	ENST00000273854.3:c.1681C>A	p.Pro561Thr	p.P561T	ENST00000273854	NM_004439.5	561	Cca/Aca					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86672323	86672323	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			114	257	315	0	ENST00000274376.6:c.2125C>T	p.Arg709Ter	p.R709*	ENST00000274376	NM_002890.2	709	Cga/Tga					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131953975	131953975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			34	151	192	0	ENST00000265335.6:c.3378G>T	p.Lys1126Asn	p.K1126N	ENST00000265335		1126	aaG/aaT					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152129397	152129397	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			459	193	179	0	ENST00000206249.3:c.350T>A	p.Leu117Gln	p.L117Q	ENST00000206249	NM_000125.3	117	cTg/cAg					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81334790	81334790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			429	274	367	0	ENST00000222390.5:c.1926C>A	p.Cys642Ter	p.C642*	ENST00000222390	NM_000601.4	642	tgC/tgA					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878604	151878604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			506	188	174	0	ENST00000262189.6:c.6341G>A	p.Arg2114Lys	p.R2114K	ENST00000262189	NM_170606.2	2114	aGg/aAg					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43600430	43600430	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			288	200	152	1	ENST00000355710.3:c.656A>T	p.Asp219Val	p.D219V	ENST00000355710	NM_020975.4	219	gAc/gTc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29001399	29001399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			85	234	217	0	ENST00000282397.4:c.1333C>T	p.Pro445Ser	p.P445S	ENST00000282397	NM_002019.4	445	Cca/Tca					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32931929	32931929	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			119	349	384	0	ENST00000380152.3:c.7668T>A	p.Asn2556Lys	p.N2556K	ENST00000380152		2556	aaT/aaA					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954300	48954300	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			80	252	330	0	ENST00000267163.4:c.1422-1G>A		p.X474_splice	ENST00000267163	NM_000321.2	474						NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41514480	41514480	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			372	278	212	0	ENST00000373198.4:c.181G>T	p.Glu61Ter	p.E61*	ENST00000373198	NM_133170.3	61	Gag/Tag					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766247	66766247	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			270	176	151	0	ENST00000374690.3:c.1259C>A	p.Ala420Glu	p.A420E	ENST00000374690	NM_000044.3	420	gCg/gAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41419930	41419930	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			507	378	248	0	ENST00000373198.4:c.391delC	p.Gln131LysfsTer17	p.Q131Kfs*17	ENST00000373198	NM_133170.3	131	Caa/aa					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138665213	138665218	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGCG	CGCGCG	T			P-0000113-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			680	293	282	0	ENST00000330315.3:c.347_352delCGCGCGinsA	p.Pro116GlnfsTer121	p.P116Qfs*121	ENST00000330315	NM_023067.3	116	cCGCGCGag/cAag					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226573297	226573297	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	119	278	0	ENST00000366794.5:c.919G>A	p.Asp307Asn	p.D307N	ENST00000366794	NM_001618.3	307	Gat/Aat					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17350571	17350571	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	117	171	0	ENST00000375499.3:c.541-2A>G		p.X181_splice	ENST00000375499	NM_003000.2	181						NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057727	27057727	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	165	343	0	ENST00000324856.7:c.1435C>T	p.Gln479Ter	p.Q479*	ENST00000324856	NM_006015.4	479	Cag/Tag					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193117024	193117024	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	124	367	0	ENST00000367435.3:c.757C>A	p.Leu253Ile	p.L253I	ENST00000367435	NM_024529.4	253	Ctt/Att					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47635624	47635624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	102	300	0	ENST00000233146.2:c.296G>T	p.Arg99Ile	p.R99I	ENST00000233146	NM_000251.2	99	aGa/aTa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47058737	47058737	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	141	219	0	ENST00000409792.3:c.7541A>T	p.His2514Leu	p.H2514L	ENST00000409792	NM_014159.6	2514	cAc/cTc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169201	32169201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	110	200	0	ENST00000375023.3:c.3832G>A	p.Gly1278Ser	p.G1278S	ENST00000375023	NM_004557.3	1278	Ggc/Agc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140501301	140501301	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	98	233	0	ENST00000288602.6:c.771G>T	p.Gln257His	p.Q257H	ENST00000288602	NM_004333.4	257	caG/caT					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18552600	18552600	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	135	335	0	ENST00000266497.5:c.2011G>T	p.Glu671Ter	p.E671*	ENST00000266497		671	Gaa/Taa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431843	49431843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	107	176	0	ENST00000301067.7:c.9296G>T	p.Arg3099Leu	p.R3099L	ENST00000301067	NM_003482.3	3099	cGc/cTc					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21563018	21563018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	38	296	0	ENST00000382592.4:c.901G>T	p.Gly301Cys	p.G301C	ENST00000382592	NM_014572.2	301	Ggc/Tgc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28610141	28610141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	79	317	2	ENST00000241453.7:c.1349C>A	p.Ala450Glu	p.A450E	ENST00000241453	NM_004119.2	450	gCg/gAg					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28624268	28624268	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	172	385	0	ENST00000241453.7:c.706G>T	p.Glu236Ter	p.E236*	ENST00000241453	NM_004119.2	236	Gaa/Taa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49027174	49027174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	271	361	0	ENST00000267163.4:c.1741G>T	p.Gly581Ter	p.G581*	ENST00000267163	NM_000321.2	581	Gga/Tga					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88799136	88799136	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			28	64	212	0	ENST00000360948.2:c.248+1G>A		p.X83_splice	ENST00000360948	NM_001012338.2	83						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577102	7577103	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TA			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	205	298	0	ENST00000269305.4:c.835_836delinsTA	p.Gly279Ter	p.G279*	ENST00000269305	NM_001126112.2	279	GGg/TAg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15964832	15964832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	181	361	0	ENST00000268712.3:c.5764A>G	p.Arg1922Gly	p.R1922G	ENST00000268712	NM_006311.3	1922	Aga/Gga					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435153	56435155	+	stop_gained	Nonsense_Mutation	ONP	CGG	CGG	AGA			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			183	46	137	0	ENST00000407977.2:c.1982_1984delinsTCT	p.Ser661_Glu662delinsPheTer	p.S661_E662delinsF*	ENST00000407977		661	tCCGag/tTCTag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597431	10597431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	256	196	1	ENST00000171111.5:c.1772G>T	p.Trp591Leu	p.W591L	ENST00000171111	NM_203500.1	591	tGg/tTg					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42839815	42839815	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			96	83	219	0	ENST00000398585.3:c.1426-2A>T		p.X476_splice	ENST00000398585	NM_001135099.1	476						NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484193	8484193	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002669-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	149	333	0	ENST00000356435.5:c.3339del	p.Phe1114SerfsTer10	p.F1114Sfs*10	ENST00000356435		1113	gcC/gc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	645	494	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	83	336	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	86	272	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180041067	180041067	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	64	345	0	ENST00000261937.6:c.3331+1G>T		p.X1111_splice	ENST00000261937	NM_182925.4	1111						NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828005	72828005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	163	732	0	ENST00000268489.5:c.8576C>T	p.Thr2859Met	p.T2859M	ENST00000268489	NM_006885.3	2859	aCg/aTg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765803	66765803	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	57	528	0	ENST00000374690.3:c.815T>C	p.Leu272Pro	p.L272P	ENST00000374690	NM_000044.3	272	cTt/cCt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178700	112178700	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000816-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	324	479	0	ENST00000257430.4:c.7409G>C	p.Arg2470Thr	p.R2470T	ENST00000257430	NM_000038.5	2470	aGa/aCa					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	534294	534294	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000816-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	90	410	0	ENST00000311189.7:c.29G>C	p.Gly10Ala	p.G10A	ENST00000311189		10	gGc/gCc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678490	88678490	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000816-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	92	507	0	ENST00000360948.2:c.1046A>G	p.His349Arg	p.H349R	ENST00000360948	NM_001012338.2	349	cAt/cGt					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028659	12028659	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000816-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	298	409	0	ENST00000353533.5:c.862T>C	p.Ser288Pro	p.S288P	ENST00000353533	NM_003010.3	288	Tct/Cct					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29490340	29490340	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000816-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	349	434	0	ENST00000358273.4:c.425T>A	p.Leu142Ter	p.L142*	ENST00000358273	NM_001042492.2	142	tTa/tAa					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	132	505	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36809730	36809730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			202	81	362	0	ENST00000373129.3:c.875C>T	p.Thr292Ile	p.T292I	ENST00000373129	NM_032017.1	292	aCc/aTc					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156844362	156844362	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	100	551	0	ENST00000524377.1:c.1196-1G>A		p.X399_splice	ENST00000524377	NM_002529.3	399						NEWRECORD																																																																									
IL10	0	MSKCC	GRCh37	1	206943235	206943235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	114	421	0	ENST00000423557.1:c.383G>A	p.Arg128Gln	p.R128Q	ENST00000423557	NM_000572.2	128	cGa/cAa					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99170944	99170944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	67	393	0	ENST00000074304.5:c.1573G>A	p.Glu525Lys	p.E525K	ENST00000074304	NM_001134224.1	525	Gag/Aag					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134911579	134911579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			186	57	431	0	ENST00000398015.3:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000398015	NM_004441.4	682	Cgc/Tgc					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189607173	189607173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			209	77	506	0	ENST00000264731.3:c.1552G>A	p.Gly518Arg	p.G518R	ENST00000264731	NM_003722.4	518	Gga/Aga					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1801140	1801140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	73	459	0	ENST00000260795.2:c.269G>A	p.Gly90Glu	p.G90E	ENST00000260795		90	gGg/gAg					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106536173	106536173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	100	348	0	ENST00000369096.4:c.140C>T	p.Thr47Ile	p.T47I	ENST00000369096	NM_001198.3	47	aCt/aTt					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162683659	162683659	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			191	78	465	0	ENST00000366898.1:c.310C>T	p.Arg104Trp	p.R104W	ENST00000366898	NM_004562.2	104	Cgg/Tgg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341890	8341890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	56	599	1	ENST00000356435.5:c.4750C>T	p.His1584Tyr	p.H1584Y	ENST00000356435		1584	Cat/Tat					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245858	46245858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	107	435	0	ENST00000334344.6:c.3952C>T	p.Gln1318Ter	p.Q1318*	ENST00000334344	NM_152641.2	1318	Cag/Tag					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28636143	28636143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			207	53	463	0	ENST00000241453.7:c.229G>A	p.Glu77Lys	p.E77K	ENST00000241453	NM_004119.2	77	Gaa/Aaa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29008336	29008336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	70	456	0	ENST00000282397.4:c.535C>T	p.Pro179Ser	p.P179S	ENST00000282397	NM_002019.4	179	Cct/Tct					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81609522	81609522	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			224	95	527	0	ENST00000298171.2:c.1120C>T	p.Gln374Ter	p.Q374*	ENST00000298171	NM_000369.2	374	Cag/Tag					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645118	67645118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	109	535	0	ENST00000264010.4:c.383C>T	p.Thr128Ile	p.T128I	ENST00000264010	NM_006565.3	128	aCc/aTc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29685571	29685571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	122	444	0	ENST00000358273.4:c.8044C>T	p.His2682Tyr	p.H2682Y	ENST00000358273	NM_001042492.2	2682	Cat/Tat					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41745208	41745208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	67	464	0	ENST00000301178.4:c.1274C>T	p.Ala425Val	p.A425V	ENST00000301178	NM_021913.4	425	gCc/gTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944629	40944629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	45	225	0	ENST00000373198.4:c.1873C>T	p.Gln625Ter	p.Q625*	ENST00000373198	NM_133170.3	625	Cag/Tag					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246680	46246681	+	splice_donor_variant	Splice_Site	DNP	GT	GT	AA			P-0001706-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	41	175	0	ENST00000334344.6:c.4773+1_4773+2delinsAA		p.X1591_splice	ENST00000334344	NM_152641.2	1591						NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	157	423	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	273	473	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142254009	142254009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1087	187	272	0	ENST00000350721.4:c.3858G>T	p.Gln1286His	p.Q1286H	ENST00000350721	NM_001184.3	1286	caG/caT					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176520456	176520456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	282	405	1	ENST00000292408.4:c.1301G>T	p.Arg434Leu	p.R434L	ENST00000292408	NM_213647.1	434	cGa/cTa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157511318	157511318	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	66	221	0	ENST00000346085.5:c.3836A>G	p.Lys1279Arg	p.K1279R	ENST00000346085	NM_020732.3	1279	aAg/aGg					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	464404	464404	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	256	400	0	ENST00000399788.2:c.790C>G	p.Arg264Gly	p.R264G	ENST00000399788	NM_001042603.1	264	Cga/Gga					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103528192	103528192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	59	143	0	ENST00000355739.4:c.3500C>A	p.Ser1167Tyr	p.S1167Y	ENST00000355739	NM_000123.3	1167	tCt/tAt					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50902651	50902651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	314	587	0	ENST00000440232.2:c.226G>C	p.Asp76His	p.D76H	ENST00000440232	NM_002691.3	76	Gat/Cat					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67593262	67593263	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0004201-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	331	465	0	ENST00000274335.5:c.2011_2012del	p.Val671HisfsTer15	p.V671Hfs*15	ENST00000274335		670	TGt/t					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002434-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			607	347	312	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7979610	7979610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002434-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	183	298	0	ENST00000319144.4:c.1415C>T	p.Ser472Leu	p.S472L	ENST00000319144	NM_001139.2	472	tCg/tTg					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39570492	39570492	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002434-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	245	329	0	ENST00000262039.4:c.688G>T	p.Glu230Ter	p.E230*	ENST00000262039	NM_002647.2	230	Gaa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	64	399	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0003324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	105	262	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508547	106508547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	42	141	0	ENST00000359195.3:c.541G>T	p.Val181Leu	p.V181L	ENST00000359195	NM_002649.2	181	Gtg/Ttg					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5064985	5064985	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	66	389	1	ENST00000381652.3:c.1159G>T	p.Val387Leu	p.V387L	ENST00000381652	NM_004972.3	387	Gta/Tta					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426779	47426779	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	91	298	0	ENST00000377045.4:c.1024C>A	p.Gln342Lys	p.Q342K	ENST00000377045	NM_001654.4	342	Cag/Aag					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937179	76937179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	156	572	0	ENST00000373344.5:c.3569G>T	p.Arg1190Ile	p.R1190I	ENST00000373344	NM_000489.3	1190	aGa/aTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			679	305	226	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	95	120	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47637453	47637453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			313	81	112	1	ENST00000233146.2:c.587C>T	p.Pro196Leu	p.P196L	ENST00000233146	NM_000251.2	196	cCa/cTa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	127	81	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131940662	131940662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	24	148	0	ENST00000265335.6:c.2689G>A	p.Glu897Lys	p.E897K	ENST00000265335		897	Gaa/Aaa					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128848606	128848606	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			456	99	179	0	ENST00000249373.3:c.1271T>C	p.Met424Thr	p.M424T	ENST00000249373	NM_005631.4	424	aTg/aCg					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372337	55372337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			419	52	120	1	ENST00000297316.4:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000297316	NM_022454.3	343	Cgg/Tgg					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26828861	26828861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			505	377	135	0	ENST00000381527.3:c.83G>A	p.Gly28Asp	p.G28D	ENST00000381527	NM_001260.1	28	gGc/gAc					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000982-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	3946	114	3	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0001842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			551	17	553	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599321	55599321	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			461	17	511	0	ENST00000288135.5:c.2447A>T	p.Asp816Val	p.D816V	ENST00000288135	NM_000222.2	816	gAc/gTc					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94201059	94201059	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0001842-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	49	491	0	ENST00000323929.3:c.1018A>T	p.Ile340Phe	p.I340F	ENST00000323929	NM_005591.3	340	Att/Ttt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0000207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	123	330	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0000207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			399	102	332	1	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68862205	68862205	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0000207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	160	311	0	ENST00000261769.5:c.2293C>T	p.Gln765Ter	p.Q765*	ENST00000261769	NM_004360.3	765	Cag/Tag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000903-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			1280	240	539	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000903-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			1336	303	599	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55153596	55153596	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0000903-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			836	179	524	0	ENST00000257290.5:c.2563-1G>C		p.X855_splice	ENST00000257290	NM_006206.4	855						NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484163	8484163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000903-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			703	405	524	0	ENST00000356435.5:c.3369G>T	p.Met1123Ile	p.M1123I	ENST00000356435		1123	atG/atT					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781032	135781032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000903-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			1300	316	741	1	ENST00000298552.3:c.1933C>T	p.Pro645Ser	p.P645S	ENST00000298552	NM_001162426.1	645	Cca/Tca					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70406651	70406651	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000903-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			1265	303	700	0	ENST00000373644.4:c.4165G>C	p.Asp1389His	p.D1389H	ENST00000373644	NM_030625.2	1389	Gac/Cac					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88690619	88690619	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000903-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			698	85	378	0	ENST00000360948.2:c.411C>G	p.Asn137Lys	p.N137K	ENST00000360948	NM_001012338.2	137	aaC/aaG					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23635412	23635412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000903-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			957	202	475	0	ENST00000261584.4:c.2752C>G	p.Pro918Ala	p.P918A	ENST00000261584	NM_024675.3	918	Cca/Gca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000903-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			527	184	279	0	ENST00000269305.4:c.773A>T	p.Glu258Val	p.E258V	ENST00000269305	NM_001126112.2	258	gAa/gTa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11101956	11101956	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000903-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			432	128	288	0	ENST00000344626.4:c.1376A>C	p.Gln459Pro	p.Q459P	ENST00000344626	NM_003072.3	459	cAg/cCg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29474110	29474110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000903-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			824	48	417	0	ENST00000389048.3:c.2065G>T	p.Gly689Trp	p.G689W	ENST00000389048	NM_004304.4	689	Ggg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0001046-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	351	417	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332						NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938529	76938536	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTTGAG	TCTTTGAG	-			P-0001046-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			715	313	535	0	ENST00000373344.5:c.2212_2219del	p.Leu738GlyfsTer13	p.L738Gfs*13	ENST00000373344	NM_000489.3	738	CTCAAAGAg/g					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	101	107	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49427057	49427057	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	235	324	0	ENST00000301067.7:c.11431C>T	p.Gln3811Ter	p.Q3811*	ENST00000301067	NM_003482.3	3811	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000156-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	402	447	0	ENST00000269305.4:c.842A>G	p.Asp281Gly	p.D281G	ENST00000269305	NM_001126112.2	281	gAc/gGc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099065	157099065	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0000871-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	37	41	0	ENST00000346085.5:c.2T>C	p.Met1?	p.M1?	ENST00000346085	NM_020732.3	1	aTg/aCg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16257817	16257817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000871-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	102	108	0	ENST00000375759.3:c.5083del	p.Glu1695AsnfsTer6	p.E1695Nfs*6	ENST00000375759	NM_015001.2	1694	gtG/gt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	169	288	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112116601	112116601	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	237	253	0	ENST00000257430.4:c.645+1G>A		p.X215_splice	ENST00000257430	NM_000038.5	215						NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55228007	55228007	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	252	396	0	ENST00000275493.2:c.1474A>C	p.Ser492Arg	p.S492R	ENST00000275493	NM_005228.3	492	Agc/Cgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	269	300	0	ENST00000269305.4:c.452C>G	p.Pro151Arg	p.P151R	ENST00000269305	NM_001126112.2	151	cCc/cGc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42796465	42796465	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	294	393	1	ENST00000575354.2:c.3022C>T	p.Gln1008Ter	p.Q1008*	ENST00000575354	NM_015125.3	1008	Cag/Tag					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40747137	40747137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	102	355	0	ENST00000373198.4:c.2945C>T	p.Pro982Leu	p.P982L	ENST00000373198	NM_133170.3	982	cCg/cTg					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56181792	56181792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002813-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			226	49	347	0	ENST00000399503.3:c.4016G>A	p.Gly1339Glu	p.G1339E	ENST00000399503	NM_005921.1	1339	gGa/gAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577077	7577077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002813-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	38	422	0	ENST00000269305.4:c.861G>C	p.Glu287Asp	p.E287D	ENST00000269305	NM_001126112.2	287	gaG/gaC					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29420441	29420441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000318-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1042	236	674	0	ENST00000389048.3:c.4040G>T	p.Arg1347Leu	p.R1347L	ENST00000389048	NM_004304.4	1347	cGg/cTg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66231724	66231724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000318-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1209	76	668	0	ENST00000273854.3:c.1976C>T	p.Pro659Leu	p.P659L	ENST00000273854	NM_004439.5	659	cCc/cTc					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	37015039	37015039	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs185643174		P-0000318-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	191	517	0	ENST00000358127.4:c.365G>A	p.Arg122Gln	p.R122Q	ENST00000358127	NM_001280556.1	122	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001923-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	179	317	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
VTCN1	0	MSKCC	GRCh37	1	117695864	117695864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001923-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	112	278	0	ENST00000369458.3:c.573C>A	p.Phe191Leu	p.F191L	ENST00000369458	NM_024626.3	191	ttC/ttA					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29663872	29663872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001923-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	116	347	0	ENST00000358273.4:c.6367C>G	p.His2123Asp	p.H2123D	ENST00000358273	NM_001042492.2	2123	Cat/Gat					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156845368	156845368	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	36	392	1	ENST00000524377.1:c.1411T>A	p.Leu471Met	p.L471M	ENST00000524377	NM_002529.3	471	Ttg/Atg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670844	134670844	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	25	130	0	ENST00000398015.3:c.755G>C	p.Arg252Pro	p.R252P	ENST00000398015	NM_004441.4	252	cGa/cCa					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33286913	33286913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	29	240	0	ENST00000374542.5:c.2024C>T	p.Ser675Phe	p.S675F	ENST00000374542	NM_001141970.1	675	tCc/tTc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3929852	3929852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	125	363	0	ENST00000262367.5:c.66C>G	p.Phe22Leu	p.F22L	ENST00000262367	NM_004380.2	22	ttC/ttG					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89448598	89448613	+	frameshift_variant	Frame_Shift_Del	DEL	GCCGCAAGTTTGAGTT	GCCGCAAGTTTGAGTT	-			P-0003200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	76	305	0	ENST00000336596.2:c.1562_1577del	p.Ser521MetfsTer19	p.S521Mfs*19	ENST00000336596	NM_005233.5	521	aGCCGCAAGTTTGAGTTt/at					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003838-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			182	56	175	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183724	10183724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003838-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			140	61	291	0	ENST00000256474.2:c.193T>C	p.Ser65Pro	p.S65P	ENST00000256474	NM_000551.3	65	Tcg/Ccg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162813	47162813	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003838-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			157	84	255	0	ENST00000409792.3:c.3313A>T	p.Arg1105Ter	p.R1105*	ENST00000409792	NM_014159.6	1105	Aga/Tga					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52702555	52702555	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003838-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			302	147	418	1	ENST00000394830.3:c.343G>T	p.Asp115Tyr	p.D115Y	ENST00000394830	NM_018313.4	115	Gac/Tac					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108201119	108201119	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003838-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			198	82	176	4	ENST00000278616.4:c.7486G>T	p.Gly2496Ter	p.G2496*	ENST00000278616	NM_000051.3	2496	Gga/Tga					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40748545	40748545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003838-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			295	114	427	0	ENST00000392038.2:c.337C>G	p.Arg113Gly	p.R113G	ENST00000392038	NM_001626.4	113	Cgg/Ggg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610077	10610077	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003838-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			345	103	414	0	ENST00000171111.5:c.633T>G	p.Phe211Leu	p.F211L	ENST00000171111	NM_203500.1	211	ttT/ttG					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44945137	44945137	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0002581-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			269	15	213	0	ENST00000377967.4:c.3461C>G	p.Ser1154Ter	p.S1154*	ENST00000377967	NM_021140.2	1154	tCa/tGa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002310-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	486	210	1	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29496970	29496970	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	167	260	0	ENST00000358273.4:c.541C>T	p.Gln181Ter	p.Q181*	ENST00000358273	NM_001042492.2	181	Cag/Tag					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000530-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	39	322	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578227	7578227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	68	608	1	ENST00000269305.4:c.622G>A	p.Asp208Asn	p.D208N	ENST00000269305	NM_001126112.2	208	Gac/Aac					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178917490	178917490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	62	349	0	ENST00000263967.3:c.365G>A	p.Gly122Asp	p.G122D	ENST00000263967	NM_006218.2	122	gGc/gAc					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89877402	89877402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	94	474	1	ENST00000389301.3:c.361G>A	p.Val121Met	p.V121M	ENST00000389301	NM_000135.2	121	Gtg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577079	7577079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	45	542	0	ENST00000269305.4:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000269305	NM_001126112.2	287	Gag/Cag					NEWRECORD																																																																									
XIAP	0	MSKCC	GRCh37	X	123020146	123020146	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	133	629	0	ENST00000355640.3:c.635del	p.Pro212LeufsTer33	p.P212Lfs*33	ENST00000355640		212	Cct/ct					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439198	52439198	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	67	388	0	ENST00000460680.1:c.1044del	p.Asn349ThrfsTer13	p.N349Tfs*13	ENST00000460680	NM_004656.3	348	ccC/cc					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	44	200	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578520	7578520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	58	181	0	ENST00000269305.4:c.410T>A	p.Leu137Gln	p.L137Q	ENST00000269305	NM_001126112.2	137	cTg/cAg					NEWRECORD																																																																									
CENPA	0	MSKCC	GRCh37	2	27015052	27015052	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	37	343	0	ENST00000335756.4:c.154C>T	p.Arg52Ter	p.R52*	ENST00000335756	NM_001809.3	52	Cga/Tga					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89528612	89528612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	35	189	0	ENST00000336596.2:c.2912C>T	p.Ala971Val	p.A971V	ENST00000336596	NM_005233.5	971	gCt/gTt					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64127960	64127960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	70	242	3	ENST00000334205.4:c.358G>A	p.Gly120Ser	p.G120S	ENST00000334205	NM_003942.2	120	Ggc/Agc					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36012709	36012729	+	inframe_deletion	In_Frame_Del	DEL	CGCGGCCTTCGCCCCCGCGGC	CGCGGCCTTCGCCCCCGCGGC	-			P-0003938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	33	74	0	ENST00000358208.4:c.156_176del	p.Ala53_Ala59del	p.A53_A59del	ENST00000358208		51	agCGCGGCCTTCGCCCCCGCGGCc/agc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27094373	27094374	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AA			P-0003938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	28	128	1	ENST00000324856.7:c.3081_3082delinsAA	p.Tyr1027_Leu1028delinsTer	p.Y1027_L1028delins*	ENST00000324856	NM_006015.4	1027	taTCtg/taAAtg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72832113	72832113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004193-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	77	919	0	ENST00000268489.5:c.4468G>A	p.Glu1490Lys	p.E1490K	ENST00000268489	NM_006885.3	1490	Gag/Aag					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30673797	30673797	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004325-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	30	278	0	ENST00000376406.3:c.3163T>G	p.Ser1055Ala	p.S1055A	ENST00000376406	NM_014641.2	1055	Tct/Gct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	212	175	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562864	21562864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000780-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	88	187	0	ENST00000382592.4:c.1055G>A	p.Arg352Gln	p.R352Q	ENST00000382592	NM_014572.2	352	cGg/cAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0002536-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	367	500	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31024854	31024854	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002536-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	307	492	0	ENST00000375687.4:c.4339C>T	p.Leu1447Phe	p.L1447F	ENST00000375687	NM_015338.5	1447	Ctc/Ttc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002206-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	32	221	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61721176	61721176	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002206-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			973	75	401	1	ENST00000401558.2:c.1098T>A	p.Phe366Leu	p.F366L	ENST00000401558	NM_003400.3	366	ttT/ttA					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99182575	99182575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001023-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	20	349	0	ENST00000074304.5:c.2378G>A	p.Arg793Gln	p.R793Q	ENST00000074304	NM_001134224.1	793	cGa/cAa					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88649968	88649968	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001023-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			374	32	424	0	ENST00000372037.3:c.217A>G	p.Asn73Asp	p.N73D	ENST00000372037	NM_004329.2	73	Aat/Gat					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0001023-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	94	513	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16004804	16004804	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001023-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			497	30	521	0	ENST00000268712.3:c.2450C>T	p.Thr817Ile	p.T817I	ENST00000268712	NM_006311.3	817	aCc/aTc					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30312638	30312638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001023-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			664	187	449	0	ENST00000262643.3:c.619C>T	p.Pro207Ser	p.P207S	ENST00000262643	NM_001238.2	207	Cct/Tct					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30313019	30313019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001023-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			638	73	474	0	ENST00000262643.3:c.822C>G	p.Ile274Met	p.I274M	ENST00000262643	NM_001238.2	274	atC/atG					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11217302	11217302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000501-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			967	112	567	2	ENST00000361445.4:c.4376C>A	p.Ala1459Asp	p.A1459D	ENST00000361445	NM_004958.3	1459	gCc/gAc					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17371320	17371320	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000501-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			787	216	555	0	ENST00000375499.3:c.136C>T	p.Arg46Ter	p.R46*	ENST00000375499	NM_003000.2	46	Cga/Tga					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944812	31944812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	175	422	0	ENST00000340398.3:c.289G>A	p.Glu97Lys	p.E97K	ENST00000340398	NM_001013699.2	97	Gaa/Aaa					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118165785	118165785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	82	237	0	ENST00000369448.3:c.295C>T	p.Leu99Phe	p.L99F	ENST00000369448	NM_017709.3	99	Ctt/Ttt					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900262	101900262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	92	315	1	ENST00000374994.4:c.696G>T	p.Lys232Asn	p.K232N	ENST00000374994	NM_004612.2	232	aaG/aaT					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68835629	68835629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	175	427	0	ENST00000261769.5:c.220C>T	p.Arg74Ter	p.R74*	ENST00000261769	NM_004360.3	74	Cga/Tga					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66941720	66941720	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	149	543	0	ENST00000374690.3:c.2364G>C	p.Met788Ile	p.M788I	ENST00000374690	NM_000044.3	788	atG/atC					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106434	27106434	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	104	291	0	ENST00000324856.7:c.6046del	p.Leu2016CysfsTer14	p.L2016Cfs*14	ENST00000324856	NM_006015.4	2015	atC/at					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0001294-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			967	296	572	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0001807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	287	475	1	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0001807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	101	514	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176212	112176212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	116	471	0	ENST00000257430.4:c.4921G>A	p.Val1641Met	p.V1641M	ENST00000257430	NM_000038.5	1641	Gtg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	199	480	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175182	112175182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001807-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			124	140	239	0	ENST00000257430.4:c.3892del	p.Ser1298LeufsTer7	p.S1298Lfs*7	ENST00000257430	NM_000038.5	1297	gaT/ga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001306-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	78	160	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68846093	68846093	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0001306-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	190	499	0	ENST00000261769.5:c.1064T>G	p.Leu355Ter	p.L355*	ENST00000261769	NM_004360.3	355	tTa/tGa					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	54	269	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241661270	241661270	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	206	314	0	ENST00000366560.3:c.1391G>T	p.Gly464Val	p.G464V	ENST00000366560	NM_000143.3	464	gGg/gTg					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35871286	35871286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			968	61	343	0	ENST00000303115.3:c.508C>G	p.Arg170Gly	p.R170G	ENST00000303115	NM_002185.3	170	Cgc/Ggc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8499685	8499685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	236	315	0	ENST00000356435.5:c.2284C>A	p.Gln762Lys	p.Q762K	ENST00000356435		762	Cag/Aag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108123623	108123623	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1020	83	357	0	ENST00000278616.4:c.1882C>T	p.Gln628Ter	p.Q628*	ENST00000278616	NM_000051.3	628	Caa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	371	466	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	175	381	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15290037	15290037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000907-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	566	423	0	ENST00000263388.2:c.3517G>T	p.Gly1173Trp	p.G1173W	ENST00000263388	NM_000435.2	1173	Ggg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000344-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	161	503	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178921379	178921379	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000344-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			753	40	547	0	ENST00000263967.3:c.861G>C	p.Leu287Phe	p.L287F	ENST00000263967	NM_006218.2	287	ttG/ttC					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88428948	88428948	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000344-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	84	736	0	ENST00000360948.2:c.2152A>T	p.Asn718Tyr	p.N718Y	ENST00000360948	NM_001012338.2	718	Aat/Tat					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597402	10597402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000344-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	167	575	0	ENST00000171111.5:c.1801C>T	p.Arg601Trp	p.R601W	ENST00000171111	NM_203500.1	601	Cgg/Tgg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221312	1221312	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000344-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	120	527	0	ENST00000326873.7:c.836delG	p.Gly279AlafsTer8	p.G279Afs*8	ENST00000326873	NM_000455.4	279	Ggc/gc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0002362-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			198	27	677	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	133	241	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41537184	41537184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	111	558	1	ENST00000263253.7:c.2011C>T	p.Pro671Ser	p.P671S	ENST00000263253	NM_001429.3	671	Cca/Tca					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15354044	15354044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	45	101	0	ENST00000263377.2:c.2836C>T	p.Pro946Ser	p.P946S	ENST00000263377	NM_058243.2	946	Cct/Tct					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94203756	94203756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	87	450	0	ENST00000323929.3:c.898C>T	p.Pro300Ser	p.P300S	ENST00000323929	NM_005591.3	300	Cct/Tct					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41419837	41419837	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	115	456	0	ENST00000373198.4:c.484C>T	p.Gln162Ter	p.Q162*	ENST00000373198	NM_133170.3	162	Cag/Tag					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161969912	161969912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	119	465	0	ENST00000366898.1:c.1057G>A	p.Glu353Lys	p.E353K	ENST00000366898	NM_004562.2	353	Gaa/Aaa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11300429	11300429	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	86	321	0	ENST00000361445.4:c.1717C>G	p.Leu573Val	p.L573V	ENST00000361445	NM_004958.3	573	Ctc/Gtc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101280	27101280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	139	529	0	ENST00000324856.7:c.4562C>T	p.Pro1521Leu	p.P1521L	ENST00000324856	NM_006015.4	1521	cCc/cTc					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118166571	118166571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	103	360	0	ENST00000369448.3:c.1081C>T	p.Pro361Ser	p.P361S	ENST00000369448	NM_017709.3	361	Cct/Tct					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458438	120458438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	148	261	0	ENST00000256646.2:c.6907C>T	p.Pro2303Ser	p.P2303S	ENST00000256646	NM_024408.3	2303	Ccc/Tcc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120462203	120462203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	194	361	0	ENST00000256646.2:c.5513G>A	p.Arg1838Gln	p.R1838Q	ENST00000256646	NM_024408.3	1838	cGa/cAa					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156849798	156849798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	116	408	0	ENST00000524377.1:c.2054G>A	p.Gly685Asp	p.G685D	ENST00000524377	NM_002529.3	685	gGc/gAc					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162746018	162746018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	118	563	1	ENST00000367921.3:c.2141G>A	p.Arg714Gln	p.R714Q	ENST00000367921	NM_006182.2	714	cGa/cAa					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226580017	226580017	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	71	342	0	ENST00000366794.5:c.287-2A>C		p.X96_splice	ENST00000366794	NM_001618.3	96						NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198265579	198265579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	310	664	0	ENST00000335508.6:c.2578G>A	p.Glu860Lys	p.E860K	ENST00000335508	NM_012433.2	860	Gaa/Aaa					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202137620	202137620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	160	654	0	ENST00000358485.4:c.728-1G>C		p.X243_splice	ENST00000358485	NM_001080125.1	243						NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259496	89259496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	80	537	1	ENST00000336596.2:c.640G>A	p.Asp214Asn	p.D214N	ENST00000336596	NM_005233.5	214	Gac/Aac					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143352343	143352343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	112	519	0	ENST00000262992.4:c.70C>T	p.Pro24Ser	p.P24S	ENST00000262992	NM_001101669.1	24	Ccc/Tcc					NEWRECORD																																																																									
VEGFA	0	MSKCC	GRCh37	6	43745248	43745248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	365	715	1	ENST00000523873.1:c.161C>T	p.Pro54Leu	p.P54L	ENST00000523873		54	cCa/cTa					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106555135	106555135	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	114	357	0	ENST00000369096.4:c.2252T>G	p.Val751Gly	p.V751G	ENST00000369096	NM_001198.3	751	gTg/gGg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117647414	117647414	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	121	669	2	ENST00000368508.3:c.5530A>T	p.Ile1844Phe	p.I1844F	ENST00000368508	NM_002944.2	1844	Atc/Ttc					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13935595	13935595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	67	381	0	ENST00000405192.2:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000405192	NM_001163147.1	421	Gag/Aag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151860308	151860308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	426	561	0	ENST00000262189.6:c.10354C>T	p.Pro3452Ser	p.P3452S	ENST00000262189	NM_170606.2	3452	Ccc/Tcc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151874334	151874334	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	493	471	0	ENST00000262189.6:c.8204T>A	p.Leu2735Ter	p.L2735*	ENST00000262189	NM_170606.2	2735	tTa/tAa					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38272377	38272377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	160	590	0	ENST00000425967.3:c.1990G>A	p.Glu664Lys	p.E664K	ENST00000425967	NM_001174067.1	664	Gag/Aag					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371815	55371815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	18	64	0	ENST00000297316.4:c.505C>T	p.Pro169Ser	p.P169S	ENST00000297316	NM_022454.3	169	Ccc/Tcc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518111	8518111	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	231	422	1	ENST00000356435.5:c.1280G>A	p.Arg427Gln	p.R427Q	ENST00000356435		427	cGa/cAa					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101908786	101908786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	137	600	0	ENST00000374994.4:c.1150C>T	p.Leu384Phe	p.L384F	ENST00000374994	NM_004612.2	384	Ctc/Ttc					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43609039	43609039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	169	610	2	ENST00000355710.3:c.1795C>T	p.Pro599Ser	p.P599S	ENST00000355710	NM_020975.4	599	Ccc/Tcc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118343391	118343391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	129	463	0	ENST00000534358.1:c.1517C>T	p.Thr506Ile	p.T506I	ENST00000534358	NM_005933.3	506	aCc/aTc					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121416732	121416732	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	142	507	2	ENST00000257555.6:c.161G>A	p.Arg54Gln	p.R54Q	ENST00000257555		54	cGa/cAa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28895689	28895689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	131	610	0	ENST00000282397.4:c.3085C>T	p.Leu1029Phe	p.L1029F	ENST00000282397	NM_002019.4	1029	Ctt/Ttt					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435438	110435438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	124	224	0	ENST00000375856.3:c.2963C>T	p.Ser988Phe	p.S988F	ENST00000375856	NM_003749.2	988	tCt/tTt					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88423566	88423566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	335	576	1	ENST00000360948.2:c.2269G>A	p.Gly757Arg	p.G757R	ENST00000360948	NM_001012338.2	757	Ggg/Agg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88679753	88679753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	131	520	0	ENST00000360948.2:c.710C>T	p.Pro237Leu	p.P237L	ENST00000360948	NM_001012338.2	237	cCc/cTc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3823918	3823918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	135	412	0	ENST00000262367.5:c.2297C>T	p.Pro766Leu	p.P766L	ENST00000262367	NM_004380.2	766	cCt/cTt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9923318	9923318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	106	541	0	ENST00000330684.3:c.1969G>A	p.Glu657Lys	p.E657K	ENST00000330684	NM_001134407.1	657	Gaa/Aaa					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2225445	2225445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	408	619	1	ENST00000398665.3:c.3655G>A	p.Glu1219Lys	p.E1219K	ENST00000398665	NM_032482.2	1219	Gaa/Aaa					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7132234	7132234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	170	478	0	ENST00000302850.5:c.2777G>A	p.Arg926Gln	p.R926Q	ENST00000302850	NM_000208.2	926	cGg/cAg					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50909505	50909505	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	202	779	0	ENST00000440232.2:c.1309C>T	p.Gln437Ter	p.Q437*	ENST00000440232	NM_002691.3	437	Cag/Tag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022862	31022862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	118	488	0	ENST00000375687.4:c.2347C>T	p.Pro783Ser	p.P783S	ENST00000375687	NM_015338.5	783	Ccg/Tcg					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36421162	36421162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	108	389	0	ENST00000300305.3:c.35C>T	p.Ser12Leu	p.S12L	ENST00000300305		12	tCg/tTg					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189526061	189526062	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	254	436	0	ENST00000264731.3:c.325_326delinsTT	p.Pro109Leu	p.P109L	ENST00000264731	NM_003722.4	109	CCa/TTa					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57753997	57753998	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	82	361	0	ENST00000274289.3:c.626_627delinsAA	p.Gly209Glu	p.G209E	ENST00000274289	NM_006622.3	209	gGG/gAA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577537	7577538	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0004641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	281	448	0	ENST00000269305.4:c.743_744delGGinsAA	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGG/cAA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001350-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	308	227	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99193459	99193459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001350-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			701	297	356	0	ENST00000074304.5:c.2654G>A	p.Arg885His	p.R885H	ENST00000074304	NM_001134224.1	885	cGc/cAc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68846168	68846168	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0001350-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	261	276	0	ENST00000261769.5:c.1137+2T>G		p.X379_splice	ENST00000261769	NM_004360.3	379						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001300-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	98	289	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045004	47045004	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001300-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	190	392	0	ENST00000329236.7:c.2096A>G	p.His699Arg	p.H699R	ENST00000329236	NM_001204466.1	699	cAc/cGc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164664	112164665	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0001300-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	93	160	0	ENST00000257430.4:c.1741_1742del	p.Lys581GlyfsTer20	p.K581Gfs*20	ENST00000257430	NM_000038.5	580	AAa/a					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17118598	17118598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001636-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			326	58	713	0	ENST00000285071.4:c.1333G>A	p.Ala445Thr	p.A445T	ENST00000285071	NM_144997.5	445	Gca/Aca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	301	255	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0000674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	113	76	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	172	209	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117683892	117683892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	302	339	0	ENST00000368508.3:c.3255C>G	p.Phe1085Leu	p.F1085L	ENST00000368508	NM_002944.2	1085	ttC/ttG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			145	142	170	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15355259	15355259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000674-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	13	42	0	ENST00000263377.2:c.2364G>C	p.Gln788His	p.Q788H	ENST00000263377	NM_058243.2	788	caG/caC					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9862740	9862740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001297-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	74	233	0	ENST00000330684.3:c.2563G>A	p.Asp855Asn	p.D855N	ENST00000330684	NM_001134407.1	855	Gac/Aac					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44929196	44929196	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001297-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			517	179	268	0	ENST00000377967.4:c.2296G>T	p.Asp766Tyr	p.D766Y	ENST00000377967	NM_021140.2	766	Gat/Tat					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931257	66931257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001297-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			628	116	323	0	ENST00000374690.3:c.1899G>T	p.Lys633Asn	p.K633N	ENST00000374690	NM_000044.3	633	aaG/aaT					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139404185	139404186	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0001297-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	27	200	0	ENST00000277541.6:c.2968_2969del	p.Ser990LeufsTer34	p.S990Lfs*34	ENST00000277541	NM_017617.3	990	AGc/c					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000238-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	226	294	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439855	52439855	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000238-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			274	167	391	0	ENST00000460680.1:c.857delA	p.Lys286SerfsTer49	p.K286Sfs*49	ENST00000460680	NM_004656.3	286	aAg/ag					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0000148-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			311	350	346	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69465943	69465943	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000148-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			510	29	285	0	ENST00000227507.2:c.781C>T	p.Gln261Ter	p.Q261*	ENST00000227507	NM_053056.2	261	Cag/Tag					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67662307	67662307	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000148-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			295	116	235	1	ENST00000264010.4:c.1553C>G	p.Thr518Ser	p.T518S	ENST00000264010	NM_006565.3	518	aCc/aGc					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20156731	20156731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000148-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			321	215	397	0	ENST00000379607.5:c.26G>T	p.Gly9Val	p.G9V	ENST00000379607	NM_001412.3	9	gGt/gTt					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	351	388	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27778017	27778017	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	750	801	0	ENST00000369163.2:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000369163	NM_003536.2	56	Cag/Tag					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183532	10183532	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	50	513	0	ENST00000256474.2:c.1A>G	p.Met1?	p.M1?	ENST00000256474	NM_000551.3	1	Atg/Gtg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			40	10	347	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			40	10	347	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243881	46243881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			105	78	528	0	ENST00000334344.6:c.1975T>C	p.Ser659Pro	p.S659P	ENST00000334344	NM_152641.2	659	Tct/Cct					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89831438	89831438	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	86	521	0	ENST00000389301.3:c.2638C>T	p.Arg880Ter	p.R880*	ENST00000389301	NM_000135.2	880	Cga/Tga					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10599973	10599973	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	12	685	0	ENST00000171111.5:c.1603G>T	p.Glu535Ter	p.E535*	ENST00000171111	NM_203500.1	535	Gag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602646	10602646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	39	500	1	ENST00000171111.5:c.932A>G	p.His311Arg	p.H311R	ENST00000171111	NM_203500.1	311	cAc/cGc					NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			37	53	655	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29550459	29550460	+	splice_acceptor_variant,intron_variant	Splice_Site	DNP	CA	CA	GC			P-0000459-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	38	311	0	ENST00000358273.4:c.1722-3_1722-2delCAinsGC		p.X574_splice	ENST00000358273	NM_001042492.2	574						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29576138	29576138	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0003760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	185	273	0	ENST00000358273.4:c.4110+1G>A		p.X1370_splice	ENST00000358273	NM_001042492.2	1370						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577526	7577526	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002242-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			39	611	380	0	ENST00000269305.4:c.755T>C	p.Leu252Pro	p.L252P	ENST00000269305	NM_001126112.2	252	cTc/cCc					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56482619	56482619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000817-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			353	34	303	0	ENST00000267101.3:c.1076G>A	p.Gly359Asp	p.G359D	ENST00000267101	NM_001982.3	359	gGc/gAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000817-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	37	220	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71027020	71027020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	88	369	1	ENST00000318789.4:c.1307G>A	p.Arg436His	p.R436H	ENST00000318789	NM_032682.5	436	cGc/cAc					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99434856	99434856	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201956526		P-0001596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1306	329	262	0	ENST00000268035.6:c.943G>A	p.Gly315Ser	p.G315S	ENST00000268035	NM_000875.3	315	Ggc/Agc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41573090	41573090	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001596-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	53	524	0	ENST00000263253.7:c.5375A>G	p.His1792Arg	p.H1792R	ENST00000263253	NM_001429.3	1792	cAt/cGt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044978	47044978	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			308	150	333	0	ENST00000329236.7:c.2073del	p.Ser692AlafsTer32	p.S692Afs*32	ENST00000329236	NM_001204466.1	690	ttC/tt					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061754	38061754	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			283	66	271	0	ENST00000250448.2:c.235C>A	p.Pro79Thr	p.P79T	ENST00000250448	NM_004496.3	79	Ccc/Acc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			167	182	234	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65335065	65335065	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	104	300	0	ENST00000342505.4:c.576G>T	p.Met192Ile	p.M192I	ENST00000342505	NM_002227.2	192	atG/atT					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52702662	52702662	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0001440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	175	303	0	ENST00000394830.3:c.237-1G>C		p.X79_splice	ENST00000394830	NM_018313.4	79						NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149433934	149433934	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			496	99	370	0	ENST00000286301.3:c.2714A>T	p.Gln905Leu	p.Q905L	ENST00000286301	NM_005211.3	905	cAg/cTg					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26967566	26967566	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			486	233	438	0	ENST00000381527.3:c.709C>T	p.Arg237Ter	p.R237*	ENST00000381527	NM_001260.1	237	Cga/Tga					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440912	52440912	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001440-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	85	293	1	ENST00000460680.1:c.592delG	p.Glu198ArgfsTer33	p.E198Rfs*33	ENST00000460680	NM_004656.3	198	Gag/ag					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	740	337	1	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108186599	108186599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	88	322	0	ENST00000278616.4:c.6056A>G	p.Tyr2019Cys	p.Y2019C	ENST00000278616	NM_000051.3	2019	tAt/tGt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630465	187630465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	335	468	0	ENST00000441802.2:c.517G>A	p.Ala173Thr	p.A173T	ENST00000441802	NM_005245.3	173	Gcc/Acc					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102206912	102206912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	91	524	0	ENST00000263464.3:c.1540C>G	p.Leu514Val	p.L514V	ENST00000263464	NM_001165.4	514	Ctg/Gtg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108168100	108168100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	51	345	0	ENST00000278616.4:c.4996G>C	p.Glu1666Gln	p.E1666Q	ENST00000278616	NM_000051.3	1666	Gaa/Caa					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15838440	15838440	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	72	256	0	ENST00000307771.7:c.937+1G>T		p.X313_splice	ENST00000307771	NM_005089.3	313						NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931318	66931318	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200737258		P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	114	288	0	ENST00000374690.3:c.1960G>A	p.Glu654Lys	p.E654K	ENST00000374690	NM_000044.3	654	Gag/Aag					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044718	47044719	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0003156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	120	193	0	ENST00000329236.7:c.1885_1886del	p.Gln629AlafsTer12	p.Q629Afs*12	ENST00000329236	NM_001204466.1	628	agACag/agag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			669	220	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0002782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			733	123	403	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16258409	16258409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	33	437	0	ENST00000375759.3:c.5674C>T	p.Pro1892Ser	p.P1892S	ENST00000375759	NM_015001.2	1892	Cca/Tca					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29446362	29446362	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	90	388	0	ENST00000389048.3:c.3205A>C	p.Met1069Leu	p.M1069L	ENST00000389048	NM_004304.4	1069	Atg/Ctg					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098801	178098801	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			808	141	465	0	ENST00000397062.3:c.244G>C	p.Glu82Gln	p.E82Q	ENST00000397062	NM_006164.4	82	Gaa/Caa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49418394	49418394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	97	272	0	ENST00000301067.7:c.16019G>A	p.Arg5340Gln	p.R5340Q	ENST00000301067	NM_003482.3	5340	cGa/cAa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112128161	112128161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002782-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			675	167	407	0	ENST00000257430.4:c.664del	p.Gln222SerfsTer71	p.Q222Sfs*71	ENST00000257430	NM_000038.5	222	Cag/ag					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187554906	187554906	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	146	486	0	ENST00000441802.2:c.4255G>T	p.Ala1419Ser	p.A1419S	ENST00000441802	NM_005245.3	1419	Gca/Tca					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692835	89692835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	43	123	0	ENST00000371953.3:c.319G>T	p.Asp107Tyr	p.D107Y	ENST00000371953	NM_000314.4	107	Gat/Tat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	199	397	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	127	391	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112170691	112170691	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	138	304	1	ENST00000257430.4:c.1787C>A	p.Ser596Ter	p.S596*	ENST00000257430	NM_000038.5	596	tCa/tAa					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123310820	123310820	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			359	58	464	0	ENST00000358487.5:c.608G>A	p.Arg203His	p.R203H	ENST00000358487	NM_000141.4	203	cGc/cAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40730802	40730802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			340	126	175	0	ENST00000373198.4:c.3733G>A	p.Gly1245Arg	p.G1245R	ENST00000373198	NM_133170.3	1245	Gga/Aga					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40739064	40739064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	184	255	0	ENST00000373198.4:c.3220G>A	p.Val1074Ile	p.V1074I	ENST00000373198	NM_133170.3	1074	Gtt/Att					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175417	112175418	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			193	60	206	0	ENST00000257430.4:c.4127_4128delAT	p.Tyr1376CysfsTer9	p.Y1376Cfs*9	ENST00000257430	NM_000038.5	1376	TAt/t					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119866	70119866	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000736-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	327	343	0	ENST00000245479.2:c.868del	p.Asp290MetfsTer93	p.D290Mfs*93	ENST00000245479	NM_000346.3	290	Gat/at					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	12	118	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78857688	78857688	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			455	48	275	0	ENST00000306801.3:c.1758G>C	p.Gln586His	p.Q586H	ENST00000306801	NM_020761.2	586	caG/caC					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138417921	138417921	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000861-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	48	162	0	ENST00000289153.2:c.1598del	p.Lys533SerfsTer6	p.K533Sfs*6	ENST00000289153	NM_006219.2	533	aAg/ag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0001154-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	196	351	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0002496-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1113	28	325	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41568561	41568561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002496-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	537	281	0	ENST00000263253.7:c.4511T>C	p.Phe1504Ser	p.F1504S	ENST00000263253	NM_001429.3	1504	tTc/tCc					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591126	67591134	+	inframe_deletion	In_Frame_Del	DEL	GAGAAAGAC	GAGAAAGAC	-			P-0002496-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	222	200	0	ENST00000274335.5:c.1723_1731del	p.Lys575_Arg577del	p.K575_R577del	ENST00000274335		573	ctGAGAAAGACg/ctg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32190321	32190321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	65	135	0	ENST00000375023.3:c.418C>T	p.Arg140Cys	p.R140C	ENST00000375023	NM_004557.3	140	Cgc/Tgc					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88681426	88681426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			444	230	192	1	ENST00000372037.3:c.1316A>G	p.Glu439Gly	p.E439G	ENST00000372037	NM_004329.2	439	gAg/gGg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49445023	49445023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	107	71	0	ENST00000301067.7:c.2443C>A	p.Leu815Met	p.L815M	ENST00000301067	NM_003482.3	815	Ctg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577561	7577561	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			177	228	214	0	ENST00000269305.4:c.720T>G	p.Ser240Arg	p.S240R	ENST00000269305	NM_001126112.2	240	agT/agG					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41419958	41419958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			716	241	394	1	ENST00000373198.4:c.363C>A	p.Asn121Lys	p.N121K	ENST00000373198	NM_133170.3	121	aaC/aaA					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266080	41266097	+	inframe_deletion	In_Frame_Del	DEL	AGCAACAGTCTTACCTGG	AGCAACAGTCTTACCTGG	-			P-0001092-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			878	122	224	0	ENST00000349496.5:c.78_95del	p.Gln26_Asp32delinsHis	p.Q26_D32delinsH	ENST00000349496	NM_001904.3	26	cAGCAACAGTCTTACCTGGac/cac					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000470-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			132	234	292	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000470-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			121	182	186	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70451308	70451308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000470-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			562	40	464	0	ENST00000373644.4:c.6148C>A	p.Gln2050Lys	p.Q2050K	ENST00000373644	NM_030625.2	2050	Cag/Aag					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49033947	49033947	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000470-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			176	208	323	0	ENST00000267163.4:c.2084T>A	p.Met695Lys	p.M695K	ENST00000267163	NM_000321.2	695	aTg/aAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0002994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			155	408	541	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	40	237	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116397532	116397532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	275	564	1	ENST00000397752.3:c.1904A>G	p.Asn635Ser	p.N635S	ENST00000397752	NM_000245.2	635	aAt/aGt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174091	112174094	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0002994-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	143	435	4	ENST00000257430.4:c.2802_2805delTTAC	p.Tyr935IlefsTer19	p.Y935Ifs*19	ENST00000257430	NM_000038.5	934	ACTTac/ac					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	156	190	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	55	62	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226567824	226567824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			934	149	170	0	ENST00000366794.5:c.1342G>A	p.Glu448Lys	p.E448K	ENST00000366794	NM_001618.3	448	Gaa/Aaa					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266494	198266494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	122	157	0	ENST00000335508.6:c.2342A>G	p.Asp781Gly	p.D781G	ENST00000335508	NM_012433.2	781	gAt/gGt					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128851900	128851900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			426	102	177	0	ENST00000249373.3:c.1972G>C	p.Glu658Gln	p.E658Q	ENST00000249373	NM_005631.4	658	Gag/Cag					NEWRECORD																																																																									
BBC3	0	MSKCC	GRCh37	19	47725076	47725076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000702-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	145	236	0	ENST00000449228.1:c.668G>A	p.Arg223Gln	p.R223Q	ENST00000449228	NM_001127240.2	223	cGa/cAa					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71090639	71090639	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000042-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	232	610	0	ENST00000318789.4:c.709A>G	p.Ser237Gly	p.S237G	ENST00000318789	NM_032682.5	237	Agt/Ggt					NEWRECORD																																																																									
SOCS1	0	MSKCC	GRCh37	16	11349127	11349127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002225-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			383	98	133	0	ENST00000332029.2:c.209C>T	p.Ala70Val	p.A70V	ENST00000332029	NM_003745.1	70	gCc/gTc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115722	8115722	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001505-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	134	437	0	ENST00000346208.3:c.1068G>A	p.Met356Ile	p.M356I	ENST00000346208		356	atG/atA					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42793442	42793442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001505-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			284	46	259	0	ENST00000575354.2:c.1244G>A	p.Arg415Gln	p.R415Q	ENST00000575354	NM_015125.3	415	cGg/cAg					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			823	79	410	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193094339	193094339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002275-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			775	45	363	0	ENST00000367435.3:c.229C>T	p.Arg77Cys	p.R77C	ENST00000367435	NM_024529.4	77	Cgt/Tgt					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48033972	48033972	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002567-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			737	163	438	0	ENST00000234420.5:c.4056A>T	p.Lys1352Asn	p.K1352N	ENST00000234420	NM_000179.2	1352	aaA/aaT					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002567-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	238	296	0	ENST00000371953.3:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000371953	NM_000314.4	92	Gac/Tac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578259	7578259	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002567-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	322	458	0	ENST00000269305.4:c.590T>A	p.Val197Glu	p.V197E	ENST00000269305	NM_001126112.2	197	gTg/gAg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123220579	123220579	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002567-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			296	458	560	0	ENST00000218089.9:c.3236C>G	p.Thr1079Arg	p.T1079R	ENST00000218089	NM_001042749.1	1079	aCa/aGa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436624	52436624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002019-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	135	370	0	ENST00000460680.1:c.2050C>T	p.Gln684Ter	p.Q684*	ENST00000460680	NM_004656.3	684	Cag/Tag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002847-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	121	435	3	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002847-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	167	335	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15300105	15300105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002847-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			78	130	492	0	ENST00000263388.2:c.1171G>A	p.Asp391Asn	p.D391N	ENST00000263388	NM_000435.2	391	Gat/Aat					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187527252	187527252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002847-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	53	412	0	ENST00000441802.2:c.10322C>G	p.Ser3441Cys	p.S3441C	ENST00000441802	NM_005245.3	3441	tCc/tGc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16055293	16055293	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002847-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			569	133	460	0	ENST00000268712.3:c.809C>G	p.Ser270Ter	p.S270*	ENST00000268712	NM_006311.3	270	tCa/tGa					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2223377	2223377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002847-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	133	470	0	ENST00000398665.3:c.3488C>T	p.Pro1163Leu	p.P1163L	ENST00000398665	NM_032482.2	1163	cCc/cTc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188198	10188198	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0002941-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			556	81	644	0	ENST00000256474.2:c.341G>C	p.Gly114Ala	p.G114A	ENST00000256474	NM_000551.3	114	gGt/gCt					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436619	52436619	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0002941-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	61	655	0	ENST00000460680.1:c.2055del	p.Gly686AlafsTer6	p.G686Afs*6	ENST00000460680	NM_004656.3	685	gaA/ga					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	34	406	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56440916	56440916	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	27	329	0	ENST00000407977.2:c.421A>G	p.Ile141Val	p.I141V	ENST00000407977		141	Atc/Gtc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108225556	108225556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	188	344	0	ENST00000278616.4:c.8805G>T	p.Met2935Ile	p.M2935I	ENST00000278616	NM_000051.3	2935	atG/atT					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47088079	47088092	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGATATACTGAA	CTGGATATACTGAA	-			P-0004644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	126	297	0	ENST00000409792.3:c.6983_6996del	p.Leu2328ArgfsTer36	p.L2328Rfs*36	ENST00000409792	NM_014159.6	2328	cTTCAGTATATCCAG/c					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128028921	128028921	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			783	191	561	0	ENST00000285398.2:c.1936G>C	p.Ala646Pro	p.A646P	ENST00000285398	NM_000122.1	646	Gct/Cct					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29587386	29587386	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0000328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	456	432	1	ENST00000358273.4:c.4431-1G>A		p.X1477_splice	ENST00000358273	NM_001042492.2	1477						NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604603	48604632	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCTTCCAAATCTTTTCTGTTAGGTCTGTC	GTCTTCCAAATCTTTTCTGTTAGGTCTGTC	-			P-0000328-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	26	161	0	ENST00000342988.3:c.1448-23_1454delGTCTTCCAAATCTTTTCTGTTAGGTCTGTC		p.X483_splice	ENST00000342988	NM_005359.5	483						NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952147	178952147	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	70	188	0	ENST00000263967.3:c.3202A>T	p.Asn1068Tyr	p.N1068Y	ENST00000263967	NM_006218.2	1068	Aac/Tac					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741760	145741760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	106	254	0	ENST00000428558.2:c.743G>A	p.Arg248His	p.R248H	ENST00000428558	NM_004260.3	248	cGt/cAt					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41554467	41554467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	123	320	0	ENST00000263253.7:c.3553A>G	p.Ile1185Val	p.I1185V	ENST00000263253	NM_001429.3	1185	Ata/Gta					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372518	55372518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	128	202	0	ENST00000297316.4:c.1208G>T	p.Ser403Ile	p.S403I	ENST00000297316	NM_022454.3	403	aGc/aTc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	83	110	0	ENST00000371953.3:c.48T>A	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taA					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685300	89685300	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	45	177	0	ENST00000371953.3:c.195C>G	p.Tyr65Ter	p.Y65*	ENST00000371953	NM_000314.4	65	taC/taG					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599333	55599333	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003022-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	60	283	0	ENST00000288135.5:c.2459A>G	p.Asp820Gly	p.D820G	ENST00000288135	NM_000222.2	820	gAt/gGt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266771	198266771	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	31	241	0	ENST00000335508.6:c.2161A>T	p.Ile721Phe	p.I721F	ENST00000335508	NM_012433.2	721	Atc/Ttc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86642492	86642492	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	11	171	0	ENST00000274376.6:c.1053G>A	p.Trp351Ter	p.W351*	ENST00000274376	NM_002890.2	351	tgG/tgA					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729648	41729648	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	20	360	0	ENST00000242208.4:c.881T>G	p.Met294Arg	p.M294R	ENST00000242208	NM_002192.2	294	aTg/aGg					NEWRECORD																																																																									
XRCC2	0	MSKCC	GRCh37	7	152345882	152345882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	21	350	0	ENST00000359321.1:c.688G>A	p.Ala230Thr	p.A230T	ENST00000359321	NM_005431.1	230	Gca/Aca					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738149	145738149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	12	269	0	ENST00000428558.2:c.2761G>A	p.Glu921Lys	p.E921K	ENST00000428558	NM_004260.3	921	Gag/Aag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29683977	29683977	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	17	259	0	ENST00000358273.4:c.7739-1G>C		p.X2580_splice	ENST00000358273	NM_001042492.2	2580						NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123164935	123164935	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	15	284	0	ENST00000218089.9:c.248T>A	p.Met83Lys	p.M83K	ENST00000218089	NM_001042749.1	83	aTg/aAg					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098959	178098982	+	inframe_deletion	In_Frame_Del	DEL	TCTATATCTTGCCTCCAAAGTATG	TCTATATCTTGCCTCCAAAGTATG	-			P-0003302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	31	212	0	ENST00000397062.3:c.63_86del	p.Ile22_Asp29del	p.I22_D29del	ENST00000397062	NM_006164.4	21	gaCATACTTTGGAGGCAAGATATAGAt/gat					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176637865	176637865	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000409-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	168	319	0	ENST00000439151.2:c.2465C>G	p.Ser822Cys	p.S822C	ENST00000439151	NM_022455.4	822	tCt/tGt					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	407454	407454	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0000409-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			670	180	286	0	ENST00000380956.4:c.1213-1G>T		p.X405_splice	ENST00000380956	NM_001195286.1	405						NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64572054	64572054	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000409-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	209	238	0	ENST00000337652.1:c.1600C>G	p.Pro534Ala	p.P534A	ENST00000337652	NM_130803.2	534	Cct/Gct					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36987093	36987093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000409-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	471	221	0	ENST00000354822.5:c.596C>T	p.Ser199Leu	p.S199L	ENST00000354822	NM_001079668.2	199	tCg/tTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000409-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	511	451	0	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41197814	41197814	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000409-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	288	263	0	ENST00000357654.3:c.5473G>C	p.Gly1825Arg	p.G1825R	ENST00000357654	NM_007294.3	1825	Ggg/Cgg					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204518506	204518506	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003033-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			367	490	269	0	ENST00000367182.3:c.1169A>G	p.Asn390Ser	p.N390S	ENST00000367182	NM_001278516.1	390	aAc/aGc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139402475	139402475	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003033-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			329	233	295	0	ENST00000277541.6:c.3442G>T	p.Glu1148Ter	p.E1148*	ENST00000277541	NM_017617.3	1148	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579381	7579381	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003033-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			127	179	208	0	ENST00000269305.4:c.306delC	p.Tyr103ThrfsTer20	p.Y103Tfs*20	ENST00000269305	NM_001126112.2	102	acC/ac					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0001359-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			691	125	359	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190682800	190682800	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001359-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			506	139	212	0	ENST00000441310.2:c.476A>T	p.Tyr159Phe	p.Y159F	ENST00000441310	NM_000534.4	159	tAc/tTc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108139179	108139179	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs113482790		P-0001359-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			489	109	282	0	ENST00000278616.4:c.2681A>G	p.Asp894Gly	p.D894G	ENST00000278616	NM_000051.3	894	gAt/gGt					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562842	21562843	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0004563-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	23	298	0	ENST00000382592.4:c.1076_1077delinsCT	p.Leu359Pro	p.L359P	ENST00000382592	NM_014572.2	359	cTG/cCT					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	385	584	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105811	27105811	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	220	593	0	ENST00000324856.7:c.5422A>T	p.Lys1808Ter	p.K1808*	ENST00000324856	NM_006015.4	1808	Aag/Tag					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15276722	15276722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	221	666	0	ENST00000263388.2:c.5543G>A	p.Arg1848His	p.R1848H	ENST00000263388	NM_000435.2	1848	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	33	393	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55211146	55211146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			529	39	396	0	ENST00000275493.2:c.389C>T	p.Thr130Ile	p.T130I	ENST00000275493	NM_005228.3	130	aCc/aTc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444884	49444884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	22	236	0	ENST00000301067.7:c.2582C>T	p.Ser861Phe	p.S861F	ENST00000301067	NM_003482.3	861	tCc/tTc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44918582	44918582	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003016-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	40	318	0	ENST00000377967.4:c.1065G>A	p.Trp355Ter	p.W355*	ENST00000377967	NM_021140.2	355	tgG/tgA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	112	536	1	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25470497	25470497	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	50	480	0	ENST00000264709.3:c.977G>T	p.Arg326Leu	p.R326L	ENST00000264709	NM_175629.2	326	cGc/cTc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70349988	70349988	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	278	277	0	ENST00000374080.3:c.3971T>A	p.Ile1324Asn	p.I1324N	ENST00000374080		1324	aTt/aAt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	62	208	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55087020	55087020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	12	141	0	ENST00000275493.2:c.50C>T	p.Ala17Val	p.A17V	ENST00000275493	NM_005228.3	17	gCg/gTg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8111524	8111524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	59	227	0	ENST00000346208.3:c.1010T>A	p.Val337Asp	p.V337D	ENST00000346208		337	gTc/gAc					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111884997	111884997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	71	384	0	ENST00000341259.2:c.995G>A	p.Arg332Lys	p.R332K	ENST00000341259	NM_005475.2	332	aGg/aAg					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063679	67063679	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	31	166	0	ENST00000412916.2:c.128G>C	p.Arg43Pro	p.R43P	ENST00000412916		43	cGc/cCc					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001857-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	25	264	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117737	70117737	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001857-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			449	50	322	0	ENST00000245479.2:c.206del	p.Phe69SerfsTer41	p.F69Sfs*41	ENST00000245479	NM_000346.3	69	Ttc/tc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	330	252	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437782	52437782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	314	407	0	ENST00000460680.1:c.1379C>G	p.Ser460Ter	p.S460*	ENST00000460680	NM_004656.3	460	tCa/tGa					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153332613	153332613	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	129	264	0	ENST00000281708.4:c.343G>T	p.Glu115Ter	p.E115*	ENST00000281708	NM_033632.3	115	Gag/Tag					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43619118	43619118	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0003299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	89	186	0	ENST00000355710.3:c.2802-1G>T		p.X934_splice	ENST00000355710	NM_020975.4	934						NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41747906	41747906	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	17	325	0	ENST00000226382.2:c.863G>C	p.Gly288Ala	p.G288A	ENST00000226382	NM_003924.3	288	gGg/gCg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2977546	2977546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	46	300	0	ENST00000396946.4:c.1138G>T	p.Asp380Tyr	p.D380Y	ENST00000396946	NM_032415.4	380	Gac/Tac					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73346947	73346947	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	18	339	2	ENST00000377767.4:c.1270G>T	p.Gly424Ter	p.G424*	ENST00000377767	NM_014953.3	424	Gga/Tga					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15975458	15975458	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	29	393	0	ENST00000268712.3:c.3895+1G>T		p.X1299_splice	ENST00000268712	NM_006311.3	1299						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579552	7579552	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	28	236	0	ENST00000269305.4:c.135del	p.Ser46ProfsTer77	p.S46Pfs*77	ENST00000269305	NM_001126112.2	45	ctG/ct					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56161697	56161704	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGATCA	AAGGATCA	-			P-0004277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	44	324	0	ENST00000399503.3:c.1197_1204del	p.Arg399SerfsTer5	p.R399Sfs*5	ENST00000399503	NM_005921.1	398	tcAAGGATCAaa/tcaa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	237	257	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	62	140	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	222	323	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241680546	241680546	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	86	438	0	ENST00000366560.3:c.203A>G	p.Tyr68Cys	p.Y68C	ENST00000366560	NM_000143.3	68	tAt/tGt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52610715	52610715	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	77	288	0	ENST00000394830.3:c.3459-1G>T		p.X1153_splice	ENST00000394830	NM_018313.4	1153						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175322	112175322	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	50	265	0	ENST00000257430.4:c.4031C>G	p.Ser1344Ter	p.S1344*	ENST00000257430	NM_000038.5	1344	tCa/tGa					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48649545	48649545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	85	552	0	ENST00000376670.3:c.29G>A	p.Gly10Glu	p.G10E	ENST00000376670	NM_002049.3	10	gGg/gAg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70361078	70361107	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGCAGCAGCAGCAACAGCAACAGCAGCAGC	AGCAGCAGCAGCAACAGCAACAGCAGCAGC	-			P-0003308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	84	146	0	ENST00000374080.3:c.6300_6329del		p.X2100_splice	ENST00000374080		2100						NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63810726	63810743	+	inframe_deletion	In_Frame_Del	DEL	CAACAACAATTCCGATGG	CAACAACAATTCCGATGG	-			P-0003414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	52	475	0	ENST00000279873.7:c.816_833del	p.Asn272_Gly277del	p.N272_G277del	ENST00000279873	NM_032199.2	271	tcCAACAACAATTCCGATGGc/tcc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			293	693	531	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			226	462	418	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551535	150551535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1824	427	608	0	ENST00000369026.2:c.472G>C	p.Gly158Arg	p.G158R	ENST00000369026	NM_021960.4	158	Ggg/Cgg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41275760	41275760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			500	359	525	2	ENST00000349496.5:c.1655C>T	p.Ser552Phe	p.S552F	ENST00000349496	NM_001904.3	552	tCc/tTc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89391146	89391146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			534	93	425	0	ENST00000336596.2:c.1212C>A	p.Asn404Lys	p.N404K	ENST00000336596	NM_005233.5	404	aaC/aaA					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128205872	128205872	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			314	58	180	0	ENST00000341105.2:c.3G>T	p.Met1?	p.M1?	ENST00000341105	NM_032638.4	1	atG/atT					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55963864	55963864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			800	758	608	1	ENST00000263923.4:c.2579C>A	p.Ala860Glu	p.A860E	ENST00000263923	NM_002253.2	860	gCa/gAa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187539963	187539963	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			353	651	463	0	ENST00000441802.2:c.7777G>C	p.Ala2593Pro	p.A2593P	ENST00000441802	NM_005245.3	2593	Gca/Cca					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177701	112177701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			670	138	375	0	ENST00000257430.4:c.6410C>T	p.Ser2137Phe	p.S2137F	ENST00000257430	NM_000038.5	2137	tCc/tTc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048868	180048868	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1124	119	446	0	ENST00000261937.6:c.1694C>G	p.Ser565Cys	p.S565C	ENST00000261937	NM_182925.4	565	tCc/tGc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180056966	180056966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1323	143	645	0	ENST00000261937.6:c.653A>G	p.Asn218Ser	p.N218S	ENST00000261937	NM_182925.4	218	aAc/aGc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139413103	139413103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1102	229	498	0	ENST00000277541.6:c.1039G>A	p.Gly347Ser	p.G347S	ENST00000277541	NM_017617.3	347	Ggc/Agc					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121432139	121432139	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			812	155	565	0	ENST00000257555.6:c.886G>T	p.Gly296Ter	p.G296*	ENST00000257555		296	Gga/Tga					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133202265	133202265	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			505	596	481	0	ENST00000320574.5:c.6623A>G	p.Gln2208Arg	p.Q2208R	ENST00000320574	NM_006231.2	2208	cAg/cGg					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3823824	3823824	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			795	101	466	0	ENST00000262367.5:c.2391C>G	p.Asn797Lys	p.N797K	ENST00000262367	NM_004380.2	797	aaC/aaG					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974774	21974774	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			198	254	299	0	ENST00000304494.5:c.53del	p.Thr18ArgfsTer8	p.T18Rfs*8	ENST00000304494	NM_000077.4	18	aCg/ag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974774	21974774	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			198	254	299	0	ENST00000304494.5:c.53del	p.Thr18ArgfsTer8	p.T18Rfs*8	ENST00000304494	NM_000077.4	18	aCg/ag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89712007	89712008	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0001571-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			282	135	167	0	ENST00000371953.3:c.625_626delinsTT	p.Gly209Leu	p.G209L	ENST00000371953	NM_000314.4	209	GGa/TTa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0002909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	10	512	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002909-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			310	15	426	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65332758	65332758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	195	472	0	ENST00000342505.4:c.781G>T	p.Val261Leu	p.V261L	ENST00000342505	NM_002227.2	261	Gtg/Ttg					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521724	89521724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	124	353	0	ENST00000336596.2:c.2801G>A	p.Gly934Asp	p.G934D	ENST00000336596	NM_005233.5	934	gGt/gAt					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	14026280	14026280	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	204	417	0	ENST00000405192.2:c.164A>T	p.Glu55Val	p.E55V	ENST00000405192	NM_001163147.1	55	gAa/gTa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8524968	8524968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	87	445	0	ENST00000356435.5:c.636C>A	p.Ser212Arg	p.S212R	ENST00000356435		212	agC/agA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49438665	49438665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	92	393	0	ENST00000301067.7:c.4825C>T	p.His1609Tyr	p.H1609Y	ENST00000301067	NM_003482.3	1609	Cac/Tac					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115117427	115117427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	66	348	0	ENST00000257566.3:c.747G>T	p.Gln249His	p.Q249H	ENST00000257566	NM_016569.3	249	caG/caT					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14014071	14014071	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	34	509	0	ENST00000311895.7:c.49G>T	p.Glu17Ter	p.E17*	ENST00000311895	NM_005236.2	17	Gag/Tag					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59926532	59926532	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	372	695	0	ENST00000259008.2:c.465A>T	p.Gln155His	p.Q155H	ENST00000259008	NM_032043.2	155	caA/caT					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55133860	55133860	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	89	443	0	ENST00000257290.5:c.1076delA	p.Asn359IlefsTer15	p.N359Ifs*15	ENST00000257290	NM_006206.4	358	gAa/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579456	7579456	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	147	303	0	ENST00000269305.4:c.231delA	p.Ala78GlnfsTer45	p.A78Qfs*45	ENST00000269305	NM_001126112.2	77	ccA/cc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29677320	29677320	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	184	481	0	ENST00000358273.4:c.7442delG	p.Gly2481ValfsTer8	p.G2481Vfs*8	ENST00000358273	NM_001042492.2	2481	Ggt/gt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	154	290	1	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000388-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	92	494	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134885819	134885819	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	20	191	0	ENST00000398015.3:c.1730A>G	p.Asp577Gly	p.D577G	ENST00000398015	NM_004441.4	577	gAt/gGt					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333346	70333346	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	13	334	0	ENST00000373644.4:c.1251A>T	p.Glu417Asp	p.E417D	ENST00000373644	NM_030625.2	417	gaA/gaT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579473	7579480	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGAGCA	GGGGAGCA	-			P-0003984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	28	182	0	ENST00000269305.4:c.207_214del	p.Ala70ArgfsTer76	p.A70Rfs*76	ENST00000269305	NM_001126112.2	69	gcTGCTCCCCcc/gccc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55211080	55211080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	44	329	0	ENST00000275493.2:c.323G>A	p.Arg108Lys	p.R108K	ENST00000275493	NM_005228.3	108	aGa/aAa					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35874639	35874639	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	45	280	0	ENST00000303115.3:c.795A>T	p.Lys265Asn	p.K265N	ENST00000303115	NM_002185.3	265	aaA/aaT					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729972	41729972	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	79	465	0	ENST00000242208.4:c.557T>C	p.Leu186Ser	p.L186S	ENST00000242208	NM_002192.2	186	tTg/tCg					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370827	55370827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	36	141	0	ENST00000297316.4:c.129G>T	p.Lys43Asn	p.K43N	ENST00000297316	NM_022454.3	43	aaG/aaT					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29687597	29687597	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	78	308	0	ENST00000358273.4:c.8253T>G	p.Ser2751Arg	p.S2751R	ENST00000358273	NM_001042492.2	2751	agT/agG					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42860421	42860421	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	67	285	0	ENST00000398585.3:c.456C>A	p.Asn152Lys	p.N152K	ENST00000398585	NM_001135099.1	152	aaC/aaA					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70340974	70340974	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	85	152	0	ENST00000374080.3:c.708delC	p.Glu237ArgfsTer19	p.E237Rfs*19	ENST00000374080		236	aCc/ac					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	193	456	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20488447	20488447	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	54	743	0	ENST00000346618.3:c.1103A>G	p.His368Arg	p.H368R	ENST00000346618	NM_001949.4	368	cAc/cGc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70352766	70352766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000153-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			843	68	793	1	ENST00000374080.3:c.4487G>A	p.Arg1496His	p.R1496H	ENST00000374080		1496	cGc/cAc					NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1218470	1218471	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0001954-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	25	536	0	ENST00000326873.7:c.348_349del	p.Leu117IlefsTer45	p.L117Ifs*45	ENST00000326873	NM_000455.4	115	gaTGtg/gatg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	143	247	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	164	285	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151845941	151845941	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	250	392	0	ENST00000262189.6:c.13071G>A	p.Trp4357Ter	p.W4357*	ENST00000262189	NM_170606.2	4357	tgG/tgA					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	554	369	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11188582	11188582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	201	322	0	ENST00000361445.4:c.5839G>C	p.Asp1947His	p.D1947H	ENST00000361445	NM_004958.3	1947	Gat/Cat					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40366887	40366887	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	89	295	0	ENST00000397332.2:c.310G>A	p.Glu104Lys	p.E104K	ENST00000397332	NM_001033082.2	104	Gaa/Aaa					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43818313	43818313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	113	302	0	ENST00000372470.3:c.1778G>C	p.Arg593Thr	p.R593T	ENST00000372470	NM_005373.2	593	aGa/aCa					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162749994	162749994	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	88	307	0	ENST00000367921.3:c.2526C>G	p.Phe842Leu	p.F842L	ENST00000367921	NM_006182.2	842	ttC/ttG					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204518519	204518519	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	96	279	0	ENST00000367182.3:c.1182C>G	p.Phe394Leu	p.F394L	ENST00000367182	NM_001278516.1	394	ttC/ttG					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25967092	25967092	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	60	262	0	ENST00000435504.4:c.2114G>C	p.Gly705Ala	p.G705A	ENST00000435504		705	gGt/gCt					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47698126	47698126	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	132	342	0	ENST00000233146.2:c.1684G>C	p.Glu562Gln	p.E562Q	ENST00000233146	NM_000251.2	562	Gag/Cag					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49935493	49935493	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	132	471	0	ENST00000296474.3:c.1871C>G	p.Ser624Ter	p.S624*	ENST00000296474	NM_002447.2	624	tCa/tGa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89390953	89390953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	218	338	0	ENST00000336596.2:c.1019C>T	p.Ser340Leu	p.S340L	ENST00000336596	NM_005233.5	340	tCa/tTa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178942495	178942495	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	102	244	0	ENST00000263967.3:c.2302G>C	p.Glu768Gln	p.E768Q	ENST00000263967	NM_006218.2	768	Gag/Cag					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41747882	41747882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	81	234	0	ENST00000226382.2:c.887C>G	p.Ser296Cys	p.S296C	ENST00000226382	NM_003924.3	296	tCt/tGt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66535283	66535283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	105	237	0	ENST00000273854.3:c.178G>A	p.Glu60Lys	p.E60K	ENST00000273854	NM_004439.5	60	Gaa/Aaa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157521	106157521	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	112	336	0	ENST00000380013.4:c.2422G>T	p.Glu808Ter	p.E808*	ENST00000380013	NM_001127208.2	808	Gaa/Taa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187541019	187541019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	75	231	0	ENST00000441802.2:c.6721C>G	p.Pro2241Ala	p.P2241A	ENST00000441802	NM_005245.3	2241	Cct/Gct					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38950054	38950054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	107	291	0	ENST00000357387.3:c.3896G>A	p.Arg1299Lys	p.R1299K	ENST00000357387	NM_152756.3	1299	aGa/aAa					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161970011	161970011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	139	360	0	ENST00000366898.1:c.958G>T	p.Ala320Ser	p.A320S	ENST00000366898	NM_004562.2	320	Gca/Tca					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50444362	50444362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	148	201	0	ENST00000331340.3:c.292G>T	p.Asp98Tyr	p.D98Y	ENST00000331340	NM_006060.4	98	Gac/Tac					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81386565	81386565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	211	335	0	ENST00000222390.5:c.422C>T	p.Ser141Phe	p.S141F	ENST00000222390	NM_000601.4	141	tCt/tTt					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412037	116412037	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	74	233	0	ENST00000397752.3:c.3022C>G	p.Pro1008Ala	p.P1008A	ENST00000397752	NM_000245.2	1008	Cca/Gca					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128851993	128851993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	143	270	0	ENST00000249373.3:c.2065C>A	p.Pro689Thr	p.P689T	ENST00000249373	NM_005631.4	689	Cct/Act					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90949279	90949279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	86	301	0	ENST00000265433.3:c.2209G>A	p.Glu737Lys	p.E737K	ENST00000265433	NM_002485.4	737	Gag/Aag					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8389380	8389380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	229	288	0	ENST00000356435.5:c.4238C>A	p.Ala1413Asp	p.A1413D	ENST00000356435		1413	gCc/gAc					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87549090	87549090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	111	345	0	ENST00000277120.3:c.1647C>G	p.Ile549Met	p.I549M	ENST00000277120		549	atC/atG					NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139814713	139814713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	97	368	0	ENST00000247668.2:c.706G>A	p.Glu236Lys	p.E236K	ENST00000247668	NM_021138.3	236	Gag/Aag					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43600525	43600525	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	73	332	0	ENST00000355710.3:c.751G>C	p.Glu251Gln	p.E251Q	ENST00000355710	NM_020975.4	251	Gag/Cag					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999795	100999795	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	155	407	0	ENST00000325455.5:c.7G>A	p.Glu3Lys	p.E3K	ENST00000325455	NM_001202474.3	3	Gag/Aag					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125503138	125503138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	117	376	0	ENST00000428830.2:c.505G>A	p.Gly169Ser	p.G169S	ENST00000428830	NM_001114121.2	169	Ggt/Agt					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	427491	427491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	130	390	0	ENST00000399788.2:c.2678G>A	p.Arg893Gln	p.R893Q	ENST00000399788	NM_001042603.1	893	cGa/cAa					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112915689	112915689	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	226	309	0	ENST00000351677.2:c.962C>G	p.Ser321Ter	p.S321*	ENST00000351677	NM_002834.3	321	tCa/tGa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133236053	133236053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	85	248	0	ENST00000320574.5:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000320574	NM_006231.2	1035	Gag/Aag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911595	32911595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	168	556	0	ENST00000380152.3:c.3103G>A	p.Glu1035Lys	p.E1035K	ENST00000380152		1035	Gaa/Aaa					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103527685	103527685	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	102	316	0	ENST00000355739.4:c.2993G>C	p.Arg998Thr	p.R998T	ENST00000355739	NM_000123.3	998	aGa/aCa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88420166	88420166	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	142	276	0	ENST00000360948.2:c.2520G>T	p.Ter840TyrextTer38	p.*840Yext*38	ENST00000360948	NM_001012338.2	840	taG/taT					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88472652	88472652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	34	197	0	ENST00000360948.2:c.1903G>A	p.Asp635Asn	p.D635N	ENST00000360948	NM_001012338.2	635	Gat/Aat					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99451967	99451967	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	95	325	0	ENST00000268035.6:c.1301G>C	p.Trp434Ser	p.W434S	ENST00000268035	NM_000875.3	434	tGg/tCg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992515	72992515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	291	464	0	ENST00000268489.5:c.1530G>T	p.Glu510Asp	p.E510D	ENST00000268489	NM_006885.3	510	gaG/gaT					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29685633	29685633	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	104	323	0	ENST00000358273.4:c.8106C>A	p.Tyr2702Ter	p.Y2702*	ENST00000358273	NM_001042492.2	2702	taC/taA					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56432330	56432330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	89	252	0	ENST00000407977.2:c.2326G>A	p.Glu776Lys	p.E776K	ENST00000407977		776	Gag/Aag					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58677881	58677881	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	194	344	0	ENST00000305921.3:c.106G>T	p.Glu36Ter	p.E36*	ENST00000305921	NM_003620.3	36	Gaa/Taa					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59761478	59761478	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	205	291	0	ENST00000259008.2:c.2929G>T	p.Ala977Ser	p.A977S	ENST00000259008	NM_032043.2	977	Gca/Tca					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63534386	63534386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	79	247	0	ENST00000307078.5:c.1135G>C	p.Glu379Gln	p.E379Q	ENST00000307078	NM_004655.3	379	Gaa/Caa					NEWRECORD																																																																									
BCL2	0	MSKCC	GRCh37	18	60795989	60795989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	60	247	0	ENST00000333681.4:c.589G>A	p.Ala197Thr	p.A197T	ENST00000333681		197	Gcc/Acc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15276653	15276653	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	93	285	0	ENST00000263388.2:c.5612C>G	p.Ser1871Ter	p.S1871*	ENST00000263388	NM_000435.2	1871	tCa/tGa					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17942524	17942524	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	42	217	0	ENST00000458235.1:c.2764G>C	p.Asp922His	p.D922H	ENST00000458235	NM_000215.3	922	Gat/Cat					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9525055	9525055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	336	371	0	ENST00000353224.5:c.1830G>T	p.Met610Ile	p.M610I	ENST00000353224	NM_177990.2	610	atG/atT					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023626	31023626	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	80	355	0	ENST00000375687.4:c.3111G>T	p.Trp1037Cys	p.W1037C	ENST00000375687	NM_015338.5	1037	tgG/tgT					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41419837	41419837	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	70	259	0	ENST00000373198.4:c.484C>T	p.Gln162Ter	p.Q162*	ENST00000373198	NM_133170.3	162	Cag/Tag					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42860356	42860356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	158	369	0	ENST00000398585.3:c.521C>T	p.Ser174Leu	p.S174L	ENST00000398585	NM_001135099.1	174	tCa/tTa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41547924	41547924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	118	335	0	ENST00000263253.7:c.2905G>A	p.Glu969Lys	p.E969K	ENST00000263253	NM_001429.3	969	Gag/Aag					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41566552	41566552	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	196	312	0	ENST00000263253.7:c.4429G>C	p.Glu1477Gln	p.E1477Q	ENST00000263253	NM_001429.3	1477	Gag/Cag					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412673	63412673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	221	401	0	ENST00000330258.3:c.494C>T	p.Pro165Leu	p.P165L	ENST00000330258	NM_152424.3	165	cCa/cTa					NEWRECORD																																																																									
HIST1H3C	0	MSKCC	GRCh37	6	26045829	26045830	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	113	654	0	ENST00000540144.1:c.191_192delinsAA	p.Arg64Gln	p.R64Q	ENST00000540144	NM_003531.2	64	cGG/cAA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002374-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			436	171	511	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29446237	29446237	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs140606509		P-0002374-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	142	486	0	ENST00000389048.3:c.3330G>C	p.Glu1110Asp	p.E1110D	ENST00000389048	NM_004304.4	1110	gaG/gaC					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56160670	56160670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002374-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	148	400	0	ENST00000399503.3:c.944G>A	p.Arg315Lys	p.R315K	ENST00000399503	NM_005921.1	315	aGa/aAa					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103513930	103513930	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002374-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			891	47	456	0	ENST00000355739.4:c.746A>T	p.His249Leu	p.H249L	ENST00000355739	NM_000123.3	249	cAt/cTt					NEWRECORD																																																																									
CD79B	0	MSKCC	GRCh37	17	62007731	62007731	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002374-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	45	230	0	ENST00000392795.3:c.136C>T	p.Arg46Trp	p.R46W	ENST00000392795	NM_001039933.1	46	Cgg/Tgg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118374161	118374161	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002374-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	147	452	0	ENST00000534358.1:c.7554del	p.Arg2519GlyfsTer7	p.R2519Gfs*7	ENST00000534358	NM_005933.3	2518	ccA/cc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	169	293	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	59	240	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120529700	120529700	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	49	250	0	ENST00000256646.2:c.757G>T	p.Glu253Ter	p.E253*	ENST00000256646	NM_024408.3	253	Gaa/Taa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163630	32163630	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	50	211	0	ENST00000375023.3:c.5596G>C	p.Ala1866Pro	p.A1866P	ENST00000375023	NM_004557.3	1866	Gcc/Ccc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106545635	106545635	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	68	314	0	ENST00000359195.3:c.3112G>T	p.Gly1038Ter	p.G1038*	ENST00000359195	NM_002649.2	1038	Gga/Tga					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133233976	133233976	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	56	262	0	ENST00000320574.5:c.3418G>A	p.Ala1140Thr	p.A1140T	ENST00000320574	NM_006231.2	1140	Gcc/Acc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133234477	133234477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	67	278	0	ENST00000320574.5:c.3355C>T	p.Leu1119Phe	p.L1119F	ENST00000320574	NM_006231.2	1119	Ctt/Ttt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42032315	42032315	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	104	629	0	ENST00000219905.7:c.4499A>T	p.Asn1500Ile	p.N1500I	ENST00000219905	NM_001164273.1	1500	aAt/aTt					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39745000	39745000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	57	313	0	ENST00000361337.2:c.1790C>T	p.Thr597Met	p.T597M	ENST00000361337	NM_003286.2	597	aCg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			49	228	277	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31019198	31019198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001421-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	241	540	0	ENST00000375687.4:c.793C>T	p.Arg265Cys	p.R265C	ENST00000375687	NM_015338.5	265	Cgt/Tgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0003477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	150	203	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142268338	142268338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	91	208	0	ENST00000350721.4:c.3154G>A	p.Ala1052Thr	p.A1052T	ENST00000350721	NM_001184.3	1052	Gcc/Acc					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41762412	41762412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	34	417	0	ENST00000301178.4:c.2092T>C	p.Tyr698His	p.Y698H	ENST00000301178	NM_021913.4	698	Tac/Cac					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44524489	44524489	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003477-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	226	214	0	ENST00000291552.4:c.68A>G	p.Lys23Arg	p.K23R	ENST00000291552	NM_006758.2	23	aAa/aGa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	9	125	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140534539	140534539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	47	188	0	ENST00000288602.6:c.374C>T	p.Ser125Phe	p.S125F	ENST00000288602	NM_004333.4	125	tCt/tTt					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101891274	101891274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	99	299	0	ENST00000374994.4:c.235C>T	p.Pro79Ser	p.P79S	ENST00000374994	NM_004612.2	79	Cct/Tct					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42054468	42054468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	116	377	0	ENST00000219905.7:c.7652C>G	p.Ser2551Cys	p.S2551C	ENST00000219905	NM_001164273.1	2551	tCt/tGt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42054533	42054533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	98	301	0	ENST00000219905.7:c.7717C>G	p.Leu2573Val	p.L2573V	ENST00000219905	NM_001164273.1	2573	Ctt/Gtt					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44942024	44942024	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	91	240	0	ENST00000377967.4:c.3274del	p.Asp1092MetfsTer12	p.D1092Mfs*12	ENST00000377967	NM_021140.2	1092	Gat/at					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	127	686	1	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98212187	98212187	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	89	838	0	ENST00000331920.6:c.3485T>G	p.Leu1162Arg	p.L1162R	ENST00000331920	NM_000264.3	1162	cTc/cGc					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	417173	417173	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0004489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	113	588	0	ENST00000399788.2:c.3379-2A>C		p.X1127_splice	ENST00000399788	NM_001042603.1	1127						NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5212403	5212403	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	149	864	0	ENST00000357368.4:c.4714C>G	p.Arg1572Gly	p.R1572G	ENST00000357368	NM_002850.3	1572	Cgg/Ggg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5221024	5221024	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	56	607	0	ENST00000357368.4:c.3442C>G	p.Pro1148Ala	p.P1148A	ENST00000357368	NM_002850.3	1148	Ccc/Gcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0001565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			210	337	280	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			197	412	163	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46244905	46244905	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			883	447	455	0	ENST00000334344.6:c.2999C>A	p.Pro1000His	p.P1000H	ENST00000334344	NM_152641.2	1000	cCt/cAt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49426550	49426550	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			889	597	431	0	ENST00000301067.7:c.11938C>T	p.Gln3980Ter	p.Q3980*	ENST00000301067	NM_003482.3	3980	Cag/Tag					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716327	52716327	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	369	305	0	ENST00000322088.6:c.771G>C	p.Trp257Cys	p.W257C	ENST00000322088	NM_014225.5	257	tgG/tgC					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54961338	54961338	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001565-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			614	329	338	0	ENST00000312783.6:c.294C>G	p.Ser98Arg	p.S98R	ENST00000312783	NM_198436.1	98	agC/agG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577515	7577515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	147	297	0	ENST00000269305.4:c.766A>C	p.Thr256Pro	p.T256P	ENST00000269305	NM_001126112.2	256	Aca/Cca					NEWRECORD																																																																									
MST1	0	MSKCC	GRCh37	3	49721622	49721622	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs200268600		P-0003539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	10	25	0	ENST00000449682.2:c.2017G>A	p.Gly673Ser	p.G673S	ENST00000449682	NM_020998.3	673	Ggt/Agt					NEWRECORD																																																																									
RAD52	0	MSKCC	GRCh37	12	1040474	1040474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	79	387	0	ENST00000358495.3:c.98C>T	p.Ala33Val	p.A33V	ENST00000358495	NM_134424.2	33	gCa/gTa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49441768	49441827	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGATAGCACTGAGAGCACTGCGAACAGGCAAGGAGGTGGCCCTCTGCCCCCCGGCCAA	GGTGATAGCACTGAGAGCACTGCGAACAGGCAAGGAGGTGGCCCTCTGCCCCCCGGCCAA	TG			P-0003539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	97	488	1	ENST00000301067.7:c.4157_4216delinsCA	p.Phe1386SerfsTer12	p.F1386Sfs*12	ENST00000301067	NM_003482.3	1386	tTTGGCCGGGGGGCAGAGGGCCACCTCCTTGCCTGTTCGCAGTGCTCTCAGTGCTATCACCct/tCAct					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000615-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1013	181	402	0	ENST00000347630.2:c.398T>G	p.Phe133Cys	p.F133C	ENST00000347630	NM_001007230.1	133	tTc/tGc					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0000114-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			894	183	357	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000114-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	409	262	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36022615	36022615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000114-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	76	398	0	ENST00000358208.4:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000358208		163	cGg/cAg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70344107	70344107	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000114-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1443	121	537	0	ENST00000374080.3:c.1843A>T	p.Thr615Ser	p.T615S	ENST00000374080		615	Act/Tct					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			836	581	444	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670234	134670234	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1003	577	446	1	ENST00000398015.3:c.145G>T	p.Asp49Tyr	p.D49Y	ENST00000398015	NM_004441.4	49	Gat/Tat					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2115535	2115535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			3291	861	741	0	ENST00000219476.3:c.1615C>T	p.Leu539Phe	p.L539F	ENST00000219476	NM_000548.3	539	Ctc/Ttc					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39613847	39613847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1210	501	591	0	ENST00000262039.4:c.1765G>A	p.Glu589Lys	p.E589K	ENST00000262039	NM_002647.2	589	Gaa/Aaa					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24133963	24133963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			374	368	346	0	ENST00000263121.7:c.114G>A	p.Met38Ile	p.M38I	ENST00000263121	NM_003073.3	38	atG/atA					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56178518	56178518	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			791	508	450	0	ENST00000399503.3:c.3491delA	p.Asp1164ValfsTer8	p.D1164Vfs*8	ENST00000399503	NM_005921.1	1164	gAt/gt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68849572	68849572	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000220-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			452	1657	694	0	ENST00000261769.5:c.1475delG	p.Arg492LysfsTer30	p.R492Kfs*30	ENST00000261769	NM_004360.3	492	aGa/aa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001613-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			377	1173	447	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2949706	2949706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001613-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			865	60	482	0	ENST00000396946.4:c.3238G>C	p.Glu1080Gln	p.E1080Q	ENST00000396946	NM_032415.4	1080	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001613-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			188	194	299	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120510781	120510781	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001613-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			757	191	452	0	ENST00000256646.2:c.1183C>G	p.Leu395Val	p.L395V	ENST00000256646	NM_024408.3	395	Cta/Gta					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49933533	49933533	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001613-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			639	239	724	1	ENST00000296474.3:c.2657G>T	p.Gly886Val	p.G886V	ENST00000296474	NM_002447.2	886	gGg/gTg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142212096	142212096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001613-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			722	96	495	0	ENST00000350721.4:c.5956G>A	p.Glu1986Lys	p.E1986K	ENST00000350721	NM_001184.3	1986	Gaa/Aaa					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131930625	131930625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001613-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			534	50	347	0	ENST00000265335.6:c.1858G>A	p.Glu620Lys	p.E620K	ENST00000265335		620	Gag/Aag					NEWRECORD																																																																									
TNFRSF14	0	MSKCC	GRCh37	1	2493219	2493219	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002480-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	42	355	0	ENST00000355716.4:c.659G>C	p.Gly220Ala	p.G220A	ENST00000355716	NM_003820.2	220	gGc/gCc					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37048532	37048532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002480-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	68	314	0	ENST00000231790.2:c.431G>A	p.Gly144Asp	p.G144D	ENST00000231790	NM_000249.3	144	gGc/gAc					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4385309	4385309	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002480-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			662	125	362	0	ENST00000261254.3:c.334C>G	p.Leu112Val	p.L112V	ENST00000261254	NM_001759.3	112	Ctc/Gtc					NEWRECORD																																																																									
SMARCD1	0	MSKCC	GRCh37	12	50479178	50479178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002480-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	29	181	0	ENST00000394963.4:c.26C>A	p.Ser9Tyr	p.S9Y	ENST00000394963	NM_003076.4	9	tCt/tAt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0001315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1202	537	547	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41513547	41513547	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	325	354	0	ENST00000263253.7:c.451A>G	p.Thr151Ala	p.T151A	ENST00000263253	NM_001429.3	151	Aca/Gca					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039132	49039133	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0001315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			54	269	306	0	ENST00000267163.4:c.2212-1_2212del		p.X738_splice	ENST00000267163	NM_000321.2	738						NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2121805	2121807	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0001315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	297	432	0	ENST00000219476.3:c.1973_1975del	p.Lys658del	p.K658del	ENST00000219476	NM_000548.3	656	gAGAag/gag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29486063	29486064	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0001315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			700	443	498	0	ENST00000358273.4:c.246_247del	p.Gln83ValfsTer23	p.Q83Vfs*23	ENST00000358273	NM_001042492.2	80	taTCtc/tatc					NEWRECORD																																																																									
NF1	4763	MSKCC	GRCh37	17	29562738	29562739	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0001315-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			743	511	630	0	ENST00000358273.4:c.3822_3823del	p.Phe1275ProfsTer8	p.F1275Pfs*8	ENST00000358273	NM_001042492.2	1273	aCT/a					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70008548	70008548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	97	238	0	ENST00000352241.4:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000352241	NM_198159.2	380	Cgg/Tgg					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152415668	152415668	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	90	226	0	ENST00000206249.3:c.1518G>C	p.Gln506His	p.Q506H	ENST00000206249	NM_000125.3	506	caG/caC					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37627919	37627919	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	449	346	0	ENST00000447079.4:c.1834C>T	p.Gln612Ter	p.Q612*	ENST00000447079	NM_015083.1	612	Caa/Taa					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56400734	56400734	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	405	525	0	ENST00000348428.3:c.1328A>C	p.Gln443Pro	p.Q443P	ENST00000348428	NM_006785.3	443	cAa/cCa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061209	38061209	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004243-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	557	146	0	ENST00000250448.2:c.780del	p.Leu260PhefsTer61	p.L260Ffs*61	ENST00000250448	NM_004496.3	260	ttG/tt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001499-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			870	120	333	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001499-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			376	81	389	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576881	7576881	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001499-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	109	432	0	ENST00000269305.4:c.965delC	p.Pro322HisfsTer23	p.P322Hfs*23	ENST00000269305	NM_001126112.2	322	cCa/ca					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8074231	8074231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	92	479	0	ENST00000377482.5:c.428C>A	p.Ala143Asp	p.A143D	ENST00000377482	NM_018948.3	143	gCc/gAc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212289026	212289026	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0000683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	52	258	0	ENST00000342788.4:c.2720G>C	p.Gly907Ala	p.G907A	ENST00000342788	NM_005235.2	907	gGa/gCa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259452	89259452	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	34	344	0	ENST00000336596.2:c.596T>A	p.Phe199Tyr	p.F199Y	ENST00000336596	NM_005233.5	199	tTc/tAc					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38959898	38959898	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	12	242	0	ENST00000357387.3:c.2034A>C	p.Lys678Asn	p.K678N	ENST00000357387	NM_152756.3	678	aaA/aaC					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4099315	4099315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	101	397	0	ENST00000262948.5:c.803C>G	p.Pro268Arg	p.P268R	ENST00000262948	NM_030662.3	268	cCc/cGc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5244383	5244383	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	30	362	0	ENST00000357368.4:c.1099T>A	p.Tyr367Asn	p.Y367N	ENST00000357368	NM_002850.3	367	Tat/Aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578230	7578230	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000683-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			83	162	429	0	ENST00000269305.4:c.619delG	p.Asp207MetfsTer40	p.D207Mfs*40	ENST00000269305	NM_001126112.2	207	Gat/at					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106156271	106156271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			96	66	300	0	ENST00000380013.4:c.1172C>T	p.Ser391Phe	p.S391F	ENST00000380013	NM_001127208.2	391	tCc/tTc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112248	115112248	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			39	28	52	0	ENST00000257566.3:c.1492C>A	p.Leu498Met	p.L498M	ENST00000257566	NM_016569.3	498	Ctg/Atg					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7990733	7990733	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	43	250	0	ENST00000319144.4:c.28A>G	p.Thr10Ala	p.T10A	ENST00000319144	NM_001139.2	10	Aca/Gca					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68856058	68856058	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001957-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			51	57	410	1	ENST00000261769.5:c.1866del	p.Asn622LysfsTer9	p.N622Kfs*9	ENST00000261769	NM_004360.3	622	aaT/aa					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001751-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			390	246	336	0	ENST00000206249.3:c.1609T>G	p.Tyr537Asp	p.Y537D	ENST00000206249	NM_000125.3	537	Tat/Gat					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3778564	3778564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001751-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	133	482	0	ENST00000262367.5:c.6484G>A	p.Gly2162Arg	p.G2162R	ENST00000262367	NM_004380.2	2162	Gga/Aga					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64127730	64127730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	13	199	0	ENST00000334205.4:c.223C>T	p.Arg75Cys	p.R75C	ENST00000334205	NM_003942.2	75	Cgc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000745-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	72	295	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0000745-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			82	27	187	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0000745-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	51	252	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128015293	128015293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000745-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	78	174	0	ENST00000285398.2:c.2228G>A	p.Arg743His	p.R743H	ENST00000285398	NM_000122.1	743	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0000745-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	81	186	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39613803	39613803	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000745-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	22	248	0	ENST00000262039.4:c.1721A>T	p.Gln574Leu	p.Q574L	ENST00000262039	NM_002647.2	574	cAg/cTg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941633	48941633	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	197	348	0	ENST00000267163.4:c.943G>T	p.Glu315Ter	p.E315*	ENST00000267163	NM_000321.2	315	Gaa/Taa					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42057138	42057138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	436	698	0	ENST00000219905.7:c.7799C>T	p.Pro2600Leu	p.P2600L	ENST00000219905	NM_001164273.1	2600	cCg/cTg					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618616	37618616	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	445	409	0	ENST00000447079.4:c.292G>T	p.Glu98Ter	p.E98*	ENST00000447079	NM_015083.1	98	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576827	7576857	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGATAAGAGGTCCCAAGACTTAGTACCTGAA	TGATAAGAGGTCCCAAGACTTAGTACCTGAA	-			P-0003172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	116	291	0	ENST00000269305.4:c.989_993+26del		p.X330_splice	ENST00000269305	NM_001126112.2	330						NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593605	55593608	+	protein_altering_variant	In_Frame_Del	DEL	GAAG	GAAG	C			P-0004305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	360	642	0	ENST00000288135.5:c.1671_1674delinsC	p.Trp557_Lys558delinsCys	p.W557_K558delinsC	ENST00000288135	NM_000222.2	557	tgGAAG/tgC					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128018857	128018857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000799-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1111	197	537	0	ENST00000285398.2:c.2011G>T	p.Ala671Ser	p.A671S	ENST00000285398	NM_000122.1	671	Gct/Tct					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6414400	6414400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000799-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	74	122	0	ENST00000356142.4:c.34G>A	p.Gly12Arg	p.G12R	ENST00000356142	NM_018890.3	12	Gga/Aga					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65560514	65560514	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000799-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			883	150	296	0	ENST00000358664.4:c.83A>G	p.His28Arg	p.H28R	ENST00000358664	NM_002382.4	28	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	78	325	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1222986	1222986	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	222	233	0	ENST00000326873.7:c.923G>T	p.Trp308Leu	p.W308L	ENST00000326873	NM_000455.4	308	tGg/tTg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123179197	123179197	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	79	490	0	ENST00000218089.9:c.646C>T	p.Arg216Ter	p.R216*	ENST00000218089	NM_001042749.1	216	Cga/Tga					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212285243	212285243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	55	476	0	ENST00000342788.4:c.3058G>A	p.Glu1020Lys	p.E1020K	ENST00000342788	NM_005235.2	1020	Gag/Aag					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186502264	186502264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0004324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	65	699	0	ENST00000323963.5:c.73G>C	p.Glu25Gln	p.E25Q	ENST00000323963		25	Gag/Cag					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153244204	153244204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	54	545	0	ENST00000281708.4:c.1953G>C	p.Leu651Phe	p.L651F	ENST00000281708	NM_033632.3	651	ttG/ttC					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528895	157528895	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	94	351	0	ENST00000346085.5:c.6620G>C	p.Arg2207Thr	p.R2207T	ENST00000346085	NM_020732.3	2207	aGa/aCa					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90965668	90965668	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	37	607	0	ENST00000265433.3:c.1649A>T	p.Lys550Ile	p.K550I	ENST00000265433	NM_002485.4	550	aAa/aTa					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128753194	128753194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	90	305	0	ENST00000377970.2:c.1355C>T	p.Ser452Phe	p.S452F	ENST00000377970	NM_002467.4	452	tCt/tTt					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145737401	145737401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	66	271	0	ENST00000428558.2:c.3286C>A	p.Arg1096Ser	p.R1096S	ENST00000428558	NM_004260.3	1096	Cgc/Agc					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121426771	121426771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	101	458	1	ENST00000257555.6:c.462G>A	p.Met154Ile	p.M154I	ENST00000257555		154	atG/atA					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030485	49030485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	71	291	0	ENST00000267163.4:c.1960G>T	p.Val654Leu	p.V654L	ENST00000267163	NM_000321.2	654	Gtg/Ttg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29670025	29670025	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0004324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	159	405	1	ENST00000358273.4:c.7063-2A>G		p.X2355_splice	ENST00000358273	NM_001042492.2	2355						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0000826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			317	110	194	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0000826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			351	89	356	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180047211	180047211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	16	483	0	ENST00000261937.6:c.2504C>T	p.Ala835Val	p.A835V	ENST00000261937	NM_182925.4	835	gCc/gTc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117639364	117639364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000826-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			501	57	388	0	ENST00000368508.3:c.5992G>A	p.Ala1998Thr	p.A1998T	ENST00000368508	NM_002944.2	1998	Gca/Aca					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000468-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			234	63	273	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27056146	27056146	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000468-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			267	73	269	0	ENST00000324856.7:c.1142C>G	p.Ser381Cys	p.S381C	ENST00000324856	NM_006015.4	381	tCc/tGc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32170240	32170240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000468-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			261	64	261	0	ENST00000375023.3:c.3368C>A	p.Pro1123His	p.P1123H	ENST00000375023	NM_004557.3	1123	cCt/cAt					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70404899	70404899	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000468-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			302	92	435	0	ENST00000373644.4:c.2413A>T	p.Ser805Cys	p.S805C	ENST00000373644	NM_030625.2	805	Agc/Tgc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31385034	31385034	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000468-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			244	68	307	0	ENST00000328111.2:c.1419delC	p.Tyr474IlefsTer116	p.Y474Ifs*116	ENST00000328111	NM_006892.3	473	ggC/gg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000263-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	94	376	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149460516	149460516	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000263-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	46	245	0	ENST00000286301.3:c.121C>T	p.Arg41Ter	p.R41*	ENST00000286301	NM_005211.3	41	Cga/Tga					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12871864	12871864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000263-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	10	72	0	ENST00000228872.4:c.581G>A	p.Arg194Lys	p.R194K	ENST00000228872	NM_004064.3	194	aGa/aAa					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3823843	3823843	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000263-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	51	246	0	ENST00000262367.5:c.2372G>C	p.Ser791Thr	p.S791T	ENST00000262367	NM_004380.2	791	aGc/aCc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001707-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			817	253	402	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001707-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			867	90	367	0	ENST00000288602.6:c.1781A>T	p.Asp594Val	p.D594V	ENST00000288602	NM_004333.4	594	gAt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0001707-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			786	141	325	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63816914	63816914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000182-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			813	200	349	0	ENST00000279873.7:c.885G>T	p.Lys295Asn	p.K295N	ENST00000279873	NM_032199.2	295	aaG/aaT					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32417829	32417829	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0000182-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			792	319	460	0	ENST00000332351.3:c.1223T>G	p.Leu408Ter	p.L408*	ENST00000332351	NM_024426.4	408	tTa/tGa					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000655-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			614	81	413	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72427658	72427658	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000655-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	161	370	0	ENST00000477973.2:c.830T>G	p.Ser278Ala	p.S278A	ENST00000477973	NM_012234.5	278	Tcc/Gcc					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370903	55370903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000655-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	52	328	0	ENST00000297316.4:c.205C>T	p.Arg69Trp	p.R69W	ENST00000297316	NM_022454.3	69	Cgg/Tgg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000655-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	193	484	0	ENST00000256078.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	61	Caa/Aaa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061469	38061469	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000655-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	109	292	0	ENST00000250448.2:c.520T>A	p.Ser174Thr	p.S174T	ENST00000250448	NM_004496.3	174	Tcg/Acg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	209	391	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			810	42	494	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6439807	6439807	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			944	523	481	0	ENST00000356142.4:c.333T>A	p.Asn111Lys	p.N111K	ENST00000356142	NM_018890.3	111	aaT/aaA					NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55593609	55593611	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-	rs121913685		P-0001892-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1164	4262	497	0	ENST00000288135.5:c.1679_1681del	p.Val560del	p.V560del	ENST00000288135	NM_000222.2	559	GTT/-					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098806	178098806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	175	397	0	ENST00000397062.3:c.239C>G	p.Thr80Arg	p.T80R	ENST00000397062	NM_006164.4	80	aCa/aGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578207	7578215	+	inframe_deletion	In_Frame_Del	DEL	ATGTCGAAA	ATGTCGAAA	-			P-0004215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	112	379	0	ENST00000269305.4:c.634_642del	p.Phe212_His214del	p.F212_H214del	ENST00000269305	NM_001126112.2	212	TTTCGACAT/-					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	169	306	1	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66727453	66727453	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	356	331	0	ENST00000307102.5:c.169A>G	p.Lys57Glu	p.K57E	ENST00000307102	NM_002755.3	57	Aag/Gag					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152382143	152382143	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	169	290	0	ENST00000206249.3:c.1253T>A	p.Val418Glu	p.V418E	ENST00000206249	NM_000125.3	418	gTa/gAa					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119170432	119170432	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	196	353	3	ENST00000264033.4:c.2662G>A	p.Ala888Thr	p.A888T	ENST00000264033	NM_005188.3	888	Gcc/Acc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			113	72	150	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	81	205	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68855984	68855984	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			71	109	289	0	ENST00000261769.5:c.1792C>T	p.Arg598Ter	p.R598*	ENST00000261769	NM_004360.3	598	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7572986	7572986	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			30	78	161	0	ENST00000269305.4:c.1123C>T	p.Gln375Ter	p.Q375*	ENST00000269305	NM_001126112.2	375	Cag/Tag					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11293486	11293486	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	120	314	0	ENST00000361445.4:c.2390A>T	p.Asn797Ile	p.N797I	ENST00000361445	NM_004958.3	797	aAt/aTt					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176104168	176104168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			244	36	194	0	ENST00000367669.3:c.946G>A	p.Glu316Lys	p.E316K	ENST00000367669	NM_022457.5	316	Gaa/Aaa					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61715353	61715353	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			171	60	269	0	ENST00000401558.2:c.2260G>T	p.Glu754Ter	p.E754*	ENST00000401558	NM_003400.3	754	Gaa/Taa					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215617239	215617239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	98	284	0	ENST00000260947.4:c.1609G>A	p.Glu537Lys	p.E537K	ENST00000260947	NM_000465.2	537	Gaa/Aaa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125785	47125785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	94	156	0	ENST00000409792.3:c.5485C>T	p.Gln1829Ter	p.Q1829*	ENST00000409792	NM_014159.6	1829	Cag/Tag					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106155622	106155622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	113	175	0	ENST00000380013.4:c.523G>A	p.Glu175Lys	p.E175K	ENST00000380013	NM_001127208.2	175	Gaa/Aaa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106155988	106155988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	100	220	0	ENST00000380013.4:c.889G>A	p.Asp297Asn	p.D297N	ENST00000380013	NM_001127208.2	297	Gat/Aat					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1293718	1293718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			153	94	131	0	ENST00000310581.5:c.1283G>A	p.Arg428Gln	p.R428Q	ENST00000310581	NM_198253.2	428	cGg/cAg					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131939060	131939060	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			127	50	221	0	ENST00000265335.6:c.2276G>T	p.Arg759Ile	p.R759I	ENST00000265335		759	aGa/aTa					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	405086	405086	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	110	258	0	ENST00000380956.4:c.1168G>C	p.Glu390Gln	p.E390Q	ENST00000380956	NM_001195286.1	390	Gag/Cag					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23538863	23538863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			57	118	229	0	ENST00000380871.4:c.576G>C	p.Glu192Asp	p.E192D	ENST00000380871	NM_006167.3	192	gaG/gaC					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913233	32913233	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	113	188	0	ENST00000380152.3:c.4741G>T	p.Glu1581Ter	p.E1581*	ENST00000380152		1581	Gag/Tag					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11984698	11984698	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			29	48	69	0	ENST00000353533.5:c.244G>T	p.Glu82Ter	p.E82*	ENST00000353533	NM_003010.3	82	Gag/Tag					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41245866	41245866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			92	105	288	0	ENST00000357654.3:c.1682C>T	p.Ser561Phe	p.S561F	ENST00000357654	NM_007294.3	561	tCt/tTt					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63533676	63533676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			63	92	239	0	ENST00000307078.5:c.1478C>T	p.Ser493Leu	p.S493L	ENST00000307078	NM_004655.3	493	tCg/tTg					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10265400	10265400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			158	99	208	0	ENST00000340748.4:c.1646C>G	p.Ser549Cys	p.S549C	ENST00000340748		549	tCc/tGc					NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1207153	1207155	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-	rs1414068445		P-0002682-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	91	245	0	ENST00000326873.7:c.250_252del	p.Lys84del	p.K84del	ENST00000326873	NM_000455.4	81	AAG/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000531-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	19	427	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002844-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			330	309	472	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974730	21974730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002844-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	128	343	0	ENST00000304494.5:c.97G>T	p.Glu33Ter	p.E33*	ENST00000304494	NM_000077.4	33	Gag/Tag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974730	21974730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002844-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	128	343	0	ENST00000304494.5:c.97G>T	p.Glu33Ter	p.E33*	ENST00000304494	NM_000077.4	33	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	230	347	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46521611	46521611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	156	422	0	ENST00000262741.5:c.797G>T	p.Arg266Leu	p.R266L	ENST00000262741	NM_003629.3	266	cGt/cTt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52582133	52582133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	170	319	0	ENST00000394830.3:c.4695G>C	p.Leu1565Phe	p.L1565F	ENST00000394830	NM_018313.4	1565	ttG/ttC					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173371	112173371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			281	249	363	0	ENST00000257430.4:c.2080G>A	p.Asp694Asn	p.D694N	ENST00000257430	NM_000038.5	694	Gac/Aac					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46244073	46244073	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	138	377	0	ENST00000334344.6:c.2167A>G	p.Ile723Val	p.I723V	ENST00000334344	NM_152641.2	723	Ata/Gta					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49436964	49436964	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	112	359	0	ENST00000301067.7:c.5539G>C	p.Glu1847Gln	p.E1847Q	ENST00000301067	NM_003482.3	1847	Gag/Cag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49448190	49448190	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			364	95	381	0	ENST00000301067.7:c.410G>T	p.Trp137Leu	p.W137L	ENST00000301067	NM_003482.3	137	tGg/tTg					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115114144	115114144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	143	367	0	ENST00000257566.3:c.1073C>A	p.Ser358Tyr	p.S358Y	ENST00000257566	NM_016569.3	358	tCc/tAc					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23646591	23646591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	124	315	0	ENST00000261584.4:c.1276G>A	p.Glu426Lys	p.E426K	ENST00000261584	NM_024675.3	426	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	122	343	0	ENST00000269305.4:c.800G>A	p.Arg267Gln	p.R267Q	ENST00000269305	NM_001126112.2	267	cGg/cAg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16075152	16075152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	144	283	0	ENST00000268712.3:c.400C>G	p.Pro134Ala	p.P134A	ENST00000268712	NM_006311.3	134	Cca/Gca					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	154	452	0	ENST00000342988.3:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000342988	NM_005359.5	351	Gat/Aat					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610465	10610465	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001867-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	128	367	0	ENST00000171111.5:c.245A>C	p.Gln82Pro	p.Q82P	ENST00000171111	NM_203500.1	82	cAg/cCg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108175462	108175462	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1801516		P-0000133-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			687	17	290	0	ENST00000278616.4:c.5557G>A	p.Asp1853Asn	p.D1853N	ENST00000278616	NM_000051.3	1853	Gat/Aat					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000133-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			233	20	78	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6045627	6045627	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs10254120		P-0000133-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			206	13	86	0	ENST00000265849.7:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000265849	NM_000535.5	20	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578513	7578513	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000133-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			374	23	242	0	ENST00000269305.4:c.417G>C	p.Lys139Asn	p.K139N	ENST00000269305	NM_001126112.2	139	aaG/aaC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	412	408	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106520000	106520000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	160	316	0	ENST00000359195.3:c.2428C>A	p.Pro810Thr	p.P810T	ENST00000359195	NM_002649.2	810	Cca/Aca					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142297540	142297540	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	157	294	0	ENST00000350721.4:c.7G>C	p.Glu3Gln	p.E3Q	ENST00000350721	NM_001184.3	3	Gaa/Caa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2968266	2968266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	145	324	1	ENST00000396946.4:c.1720G>A	p.Val574Ile	p.V574I	ENST00000396946	NM_032415.4	574	Gtc/Atc					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117868976	117868976	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1579	185	398	0	ENST00000297338.2:c.723C>G	p.Ile241Met	p.I241M	ENST00000297338	NM_006265.2	241	atC/atG					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17955156	17955156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	271	226	0	ENST00000458235.1:c.71G>C	p.Gly24Ala	p.G24A	ENST00000458235	NM_000215.3	24	gGt/gCt					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39795338	39795338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	258	282	0	ENST00000288319.7:c.382C>T	p.Pro128Ser	p.P128S	ENST00000288319	NM_182918.3	128	Cca/Tca					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41548249	41548249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	158	244	0	ENST00000263253.7:c.3037G>C	p.Glu1013Gln	p.E1013Q	ENST00000263253	NM_001429.3	1013	Gaa/Caa					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53239597	53239597	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	117	306	0	ENST00000375401.3:c.1745C>T	p.Pro582Leu	p.P582L	ENST00000375401	NM_004187.3	582	cCa/cTa					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944769	31944812	+	frameshift_variant	Frame_Shift_Del	DEL	GCACACAGGTTAGTATCTTCCAACAGACCCACCAGGTACGCTTC	GCACACAGGTTAGTATCTTCCAACAGACCCACCAGGTACGCTTC	-			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	138	190	0	ENST00000340398.3:c.289_332del	p.Glu97HisfsTer4	p.E97Hfs*4	ENST00000340398	NM_001013699.2	97	GAAGCGTACCTGGTGGGTCTGTTGGAAGATACTAACCTGTGTGCc/c					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944819	31944820	+	missense_variant	Missense_Mutation	DNP	CT	CT	TA			P-0003647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	146	443	0	ENST00000340398.3:c.281_282delinsTA	p.Glu94Val	p.E94V	ENST00000340398	NM_001013699.2	94	gAG/gTA					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15276864	15276864	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	55	346	0	ENST00000263388.2:c.5401G>C	p.Gly1801Arg	p.G1801R	ENST00000263388	NM_000435.2	1801	Ggg/Cgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0003753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	53	400	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	13	348	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	43	293	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	21	165	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	27	138	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554630	63554630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	39	170	0	ENST00000307078.5:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000307078	NM_004655.3	37	Cag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	165	446	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	80	398	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106763	27106763	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	64	375	0	ENST00000324856.7:c.6374T>G	p.Leu2125Arg	p.L2125R	ENST00000324856	NM_006015.4	2125	cTc/cGc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28964083	28964083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	79	472	0	ENST00000282397.4:c.1819C>A	p.Gln607Lys	p.Q607K	ENST00000282397	NM_002019.4	607	Caa/Aaa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434958	49434958	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0003558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	20	179	0	ENST00000301067.7:c.6595delT	p.Tyr2199IlefsTer65	p.Y2199Ifs*65	ENST00000301067	NM_003482.3	2199	Tat/at					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002184-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1309	460	340	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0002184-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			269	734	471	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741915	17741915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002184-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			85	48	48	0	ENST00000250003.3:c.586G>A	p.Asp196Asn	p.D196N	ENST00000250003	NM_002478.4	196	Gac/Aac					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0002944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	101	580	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3115045	3115045	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002944-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	26	504	0	ENST00000078429.4:c.580T>C	p.Phe194Leu	p.F194L	ENST00000078429	NM_002067.2	194	Ttc/Ctc					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30074295	30074296	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0001110-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	94	272	0	ENST00000338641.4:c.1557_1558delinsTT	p.Met519_Glu520delinsIleTer	p.M519_E520delinsI*	ENST00000338641	NM_000268.3	519	atGGag/atTTag					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220400	1220400	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	66	388	0	ENST00000326873.7:c.493G>C	p.Glu165Gln	p.E165Q	ENST00000326873	NM_000455.4	165	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	71	409	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61144017	61144017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			561	133	307	0	ENST00000295025.8:c.400G>A	p.Glu134Lys	p.E134K	ENST00000295025	NM_002908.2	134	Gaa/Aaa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142274974	142274974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	121	250	0	ENST00000350721.4:c.2086G>T	p.Val696Phe	p.V696F	ENST00000350721	NM_001184.3	696	Gtc/Ttc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66197704	66197704	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			601	56	308	0	ENST00000273854.3:c.2995C>T	p.Gln999Ter	p.Q999*	ENST00000273854	NM_004439.5	999	Cag/Tag					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158626	26158626	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	27	109	0	ENST00000289316.2:c.229G>C	p.Glu77Gln	p.E77Q	ENST00000289316	NM_138720.2	77	Gag/Cag					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135782136	135782136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	52	460	0	ENST00000298552.3:c.1420G>T	p.Glu474Ter	p.E474*	ENST00000298552	NM_001162426.1	474	Gaa/Taa					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43613863	43613863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			400	33	284	0	ENST00000355710.3:c.2327T>C	p.Phe776Ser	p.F776S	ENST00000355710	NM_020975.4	776	tTc/tCc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70432777	70432777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			586	42	447	0	ENST00000373644.4:c.4799G>C	p.Arg1600Thr	p.R1600T	ENST00000373644	NM_030625.2	1600	aGa/aCa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49050906	49050906	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			550	121	306	1	ENST00000267163.4:c.2590G>T	p.Glu864Ter	p.E864*	ENST00000267163	NM_000321.2	864	Gaa/Taa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1206925	1206925	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	59	145	0	ENST00000326873.7:c.13G>C	p.Asp5His	p.D5H	ENST00000326873	NM_000455.4	5	Gac/Cac					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1206952	1206952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	70	182	0	ENST00000326873.7:c.40G>A	p.Glu14Lys	p.E14K	ENST00000326873	NM_000455.4	14	Gag/Aag					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207114	1207114	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002178-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	87	338	0	ENST00000326873.7:c.202G>C	p.Asp68His	p.D68H	ENST00000326873	NM_000455.4	68	Gac/Cac					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149500868	149500868	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	198	216	1	ENST00000261799.4:c.2362C>T	p.Arg788Ter	p.R788*	ENST00000261799	NM_002609.3	788	Cga/Tga					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061450	38061450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	174	201	0	ENST00000250448.2:c.539C>T	p.Thr180Ile	p.T180I	ENST00000250448	NM_004496.3	180	aCc/aTc					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41743895	41743895	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	152	516	1	ENST00000301178.4:c.830A>G	p.Asp277Gly	p.D277G	ENST00000301178	NM_021913.4	277	gAc/gGc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692812	89692812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	155	226	0	ENST00000371953.3:c.297del	p.Glu99AspfsTer14	p.E99Dfs*14	ENST00000371953	NM_000314.4	99	gAa/ga					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16263715	16263715	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002116-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			217	44	203	0	ENST00000375759.3:c.10084C>G	p.Pro3362Ala	p.P3362A	ENST00000375759	NM_015001.2	3362	Cct/Gct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578407	7578407	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs138729528		P-0002116-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	42	250	0	ENST00000269305.4:c.523C>G	p.Arg175Gly	p.R175G	ENST00000269305	NM_001126112.2	175	Cgc/Ggc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440266	52440286	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACCTGCTGCAGAGCCTCTAG	TACCTGCTGCAGAGCCTCTAG	-			P-0002116-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			257	38	285	0	ENST00000460680.1:c.766_783+3del		p.X256_splice	ENST00000460680	NM_004656.3	256						NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12650735	12650735	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			613	446	274	0	ENST00000251849.4:c.420C>G	p.Asn140Lys	p.N140K	ENST00000251849	NM_002880.3	140	aaC/aaG					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117665348	117665348	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1057	122	287	0	ENST00000368508.3:c.4399A>T	p.Arg1467Ter	p.R1467*	ENST00000368508	NM_002944.2	1467	Aga/Tga					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544649	65544654	+	frameshift_variant	Frame_Shift_Del	DEL	CATTCT	CATTCT	G			P-0002552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			89	454	313	0	ENST00000358664.4:c.272_277delinsC	p.Gln91ProfsTer53	p.Q91Pfs*53	ENST00000358664	NM_002382.4	91	cAGAATGct/cCct					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29562642	29562642	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002552-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			774	630	385	0	ENST00000358273.4:c.3722del	p.Arg1241GlnfsTer25	p.R1241Qfs*25	ENST00000358273	NM_001042492.2	1241	cGa/ca					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	110	253	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	108	213	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	122	176	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114710972	114710976	+	frameshift_variant	Frame_Shift_Del	DEL	AGACG	AGACG	-			P-0004081-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	106	336	0	ENST00000543371.1:c.196_200del	p.Arg66AlafsTer29	p.R66Afs*29	ENST00000543371	NM_001198531.1	66	AGACGg/g					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			363	888	392	0	ENST00000269305.4:c.814G>C	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ctg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29653080	29653080	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			188	485	273	0	ENST00000358273.4:c.5078A>G	p.His1693Arg	p.H1693R	ENST00000358273	NM_001042492.2	1693	cAt/cGt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600417	10600417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			403	663	366	0	ENST00000171111.5:c.1438G>T	p.Gly480Trp	p.G480W	ENST00000171111	NM_203500.1	480	Ggg/Tgg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1219412	1219422	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGCGTGCGC	GGTGCGTGCGC	-			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			199	299	202	0	ENST00000326873.7:c.464+2_464+12del		p.X155_splice	ENST00000326873	NM_000455.4	155						NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023208	27023208	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			191	73	124	0	ENST00000324856.7:c.314G>T	p.Gly105Val	p.G105V	ENST00000324856	NM_006015.4	105	gGg/gTg					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119720987	119720987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			545	209	396	0	ENST00000316626.5:c.188G>C	p.Gly63Ala	p.G63A	ENST00000316626		63	gGa/gCa					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150016322	150016322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			443	155	304	0	ENST00000253339.5:c.384C>A	p.Asn128Lys	p.N128K	ENST00000253339		128	aaC/aaA					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738648	145738648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			715	255	142	0	ENST00000428558.2:c.2416G>A	p.Gly806Arg	p.G806R	ENST00000428558	NM_004260.3	806	Ggg/Agg					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21563201	21563201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			463	188	296	0	ENST00000382592.4:c.718G>C	p.Glu240Gln	p.E240Q	ENST00000382592	NM_014572.2	240	Gag/Cag					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42058472	42058472	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002731-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			461	638	565	0	ENST00000219905.7:c.8193del	p.Asp2732ThrfsTer20	p.D2732Tfs*20	ENST00000219905	NM_001164273.1	2731	gTt/gt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183696	10183696	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	129	227	0	ENST00000256474.2:c.166del	p.Ala56ProfsTer11	p.A56Pfs*11	ENST00000256474	NM_000551.3	55	gaG/ga					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135776215	135776218	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0004413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	164	371	0	ENST00000298552.3:c.2509_2512del	p.Asn837ValfsTer11	p.N837Vfs*11	ENST00000298552	NM_001162426.1	837	AACAgt/gt					NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10188261	10188261	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0002820-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			411	78	565	0	ENST00000256474.2:c.404T>G	p.Leu135Ter	p.L135*	ENST00000256474	NM_000551.3	135	tTa/tGa					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24143130	24143130	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0002820-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	44	430	0	ENST00000263121.7:c.363-1G>T		p.X121_splice	ENST00000263121	NM_003073.3	121						NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90982762	90982769	+	frameshift_variant	Frame_Shift_Del	DEL	AACTGCGG	AACTGCGG	-			P-0002820-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			585	96	487	0	ENST00000265433.3:c.719_726del	p.Ser240CysfsTer8	p.S240Cfs*8	ENST00000265433	NM_002485.4	240	tCCGCAGTT/t					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30069467	30069468	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0002820-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	27	237	0	ENST00000338641.4:c.1336_1337del	p.Arg446GlufsTer48	p.R446Efs*48	ENST00000338641	NM_000268.3	444	tcAGag/tcag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	57	173	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	178	278	0	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67593301	67593301	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	58	243	0	ENST00000274335.5:c.2047G>T	p.Glu683Ter	p.E683*	ENST00000274335		683	Gag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	94	138	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93967988	93967988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	118	378	0	ENST00000369303.4:c.1939G>A	p.Val647Ile	p.V647I	ENST00000369303	NM_004440.3	647	Gtc/Atc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041668	42041668	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	193	432	1	ENST00000219905.7:c.5863G>T	p.Val1955Phe	p.V1955F	ENST00000219905	NM_001164273.1	1955	Gtt/Ttt					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114900910	114901013	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGACGGTGTCTTTCTCTGTTCTCCTCCCCACAGTCTAACAAAGTGCCAGTGGTGCAGCACCCTCACCATGTCCACCCCCTCACGCCTCTTATCACGTACAGCAA	TGACGGTGTCTTTCTCTGTTCTCCTCCCCACAGTCTAACAAAGTGCCAGTGGTGCAGCACCCTCACCATGTCCACCCCCTCACGCCTCTTATCACGTACAGCAA	-			P-0003999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	95	256	0	ENST00000543371.1:c.553-30_626del		p.X185_splice	ENST00000543371	NM_001198531.1	185						NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100308	27100308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000298-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			254	51	489	0	ENST00000324856.7:c.4020delC	p.Asn1341IlefsTer140	p.N1341Ifs*140	ENST00000324856	NM_006015.4	1340	ggC/gg					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149499120	149499120	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003025-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	125	368	0	ENST00000261799.4:c.2708del	p.Pro903LeufsTer7	p.P903Lfs*7	ENST00000261799	NM_002609.3	903	cCt/ct					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55955966	55955966	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	517	231	0	ENST00000263923.4:c.3196C>T	p.Arg1066Cys	p.R1066C	ENST00000263923	NM_002253.2	1066	Cgc/Tgc					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143081519	143081519	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	851	216	0	ENST00000262992.4:c.1555G>T	p.Glu519Ter	p.E519*	ENST00000262992	NM_001101669.1	519	Gaa/Taa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151868429	151868429	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0004600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	222	214	0	ENST00000262189.6:c.9375-2A>C		p.X3125_splice	ENST00000262189	NM_170606.2	3125						NEWRECORD																																																																									
XRCC2	0	MSKCC	GRCh37	7	152345855	152345855	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	392	356	0	ENST00000359321.1:c.715A>T	p.Met239Leu	p.M239L	ENST00000359321	NM_005431.1	239	Atg/Ttg					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56492311	56492311	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	314	270	0	ENST00000267101.3:c.2644A>T	p.Ser882Cys	p.S882C	ENST00000267101	NM_001982.3	882	Agt/Tgt					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439286	52439286	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002135-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			88	183	239	0	ENST00000460680.1:c.956C>A	p.Ser319Ter	p.S319*	ENST00000460680	NM_004656.3	319	tCa/tAa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108106492	108106492	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002135-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			138	492	229	0	ENST00000278616.4:c.427A>G	p.Asn143Asp	p.N143D	ENST00000278616	NM_000051.3	143	Aac/Gac					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			223	254	338	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	112	354	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212589848	212589848	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	121	268	0	ENST00000342788.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000342788	NM_005235.2	232	Cga/Tga					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	42	377	0	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49442974	49442974	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	45	328	0	ENST00000301067.7:c.3934C>T	p.Arg1312Cys	p.R1312C	ENST00000301067	NM_003482.3	1312	Cgc/Tgc					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12016603	12016603	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	183	404	0	ENST00000353533.5:c.739G>T	p.Asp247Tyr	p.D247Y	ENST00000353533	NM_003010.3	247	Gac/Tac					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47040639	47040639	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			121	197	236	0	ENST00000329236.7:c.1040G>A	p.Trp347Ter	p.W347*	ENST00000329236	NM_001204466.1	347	tGg/tAg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105621	27105621	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001170-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			369	109	447	0	ENST00000324856.7:c.5232del	p.Leu1745TrpfsTer25	p.L1745Wfs*25	ENST00000324856	NM_006015.4	1744	ctA/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0002060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	133	299	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8486334	8486334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	20	134	0	ENST00000356435.5:c.2483G>A	p.Arg828Gln	p.R828Q	ENST00000356435		828	cGg/cAg					NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1219336	1219336	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0002060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	120	336	0	ENST00000326873.7:c.388G>T	p.Glu130Ter	p.E130*	ENST00000326873	NM_000455.4	130	Gag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602404	10602404	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	102	384	0	ENST00000171111.5:c.1174G>C	p.Ala392Pro	p.A392P	ENST00000171111	NM_203500.1	392	Gcc/Ccc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000301-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			611	91	402	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0000301-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			807	40	304	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	483	348	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123179197	123179197	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	62	401	0	ENST00000218089.9:c.646C>T	p.Arg216Ter	p.R216*	ENST00000218089	NM_001042749.1	216	Cga/Tga					NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	219	241	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133220130	133220130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	27	301	0	ENST00000320574.5:c.4307G>A	p.Arg1436Gln	p.R1436Q	ENST00000320574	NM_006231.2	1436	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578259	7578259	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	89	704	0	ENST00000269305.4:c.590T>A	p.Val197Glu	p.V197E	ENST00000269305	NM_001126112.2	197	gTg/gAg					NEWRECORD																																																																									
VTCN1	0	MSKCC	GRCh37	1	117690393	117690419	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGATCTCCGATTCTGTGAAGTGAGAGA	TGATCTCCGATTCTGTGAAGTGAGAGA	-			P-0004684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	81	483	0	ENST00000369458.3:c.725-15_736del		p.X242_splice	ENST00000369458	NM_024626.3	242						NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	156	330	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574035	7574035	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0004392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	121	650	0	ENST00000269305.4:c.994-2A>G		p.X332_splice	ENST00000269305	NM_001126112.2	332						NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878464	151878464	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	73	334	0	ENST00000262189.6:c.6481C>T	p.Gln2161Ter	p.Q2161*	ENST00000262189	NM_170606.2	2161	Caa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	198	230	1	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105764	27105764	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	34	323	0	ENST00000324856.7:c.5375G>T	p.Gly1792Val	p.G1792V	ENST00000324856	NM_006015.4	1792	gGc/gTc					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202141632	202141632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	396	394	0	ENST00000358485.4:c.920G>T	p.Arg307Leu	p.R307L	ENST00000358485	NM_001080125.1	307	cGg/cTg					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86642511	86642511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	217	236	0	ENST00000274376.6:c.1072A>G	p.Lys358Glu	p.K358E	ENST00000274376	NM_002890.2	358	Aaa/Gaa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2969699	2969699	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	46	338	0	ENST00000396946.4:c.1580A>G	p.His527Arg	p.H527R	ENST00000396946	NM_032415.4	527	cAc/cGc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55223522	55223522	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	278	593	0	ENST00000275493.2:c.890-1G>T		p.X297_splice	ENST00000275493	NM_005228.3	297						NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625094	69625094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	55	221	0	ENST00000334134.2:c.699G>T	p.Gln233His	p.Q233H	ENST00000334134	NM_005247.2	233	caG/caT					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944915	31944915	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	126	302	0	ENST00000340398.3:c.186C>G	p.Ile62Met	p.I62M	ENST00000340398	NM_001013699.2	62	atC/atG					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46123836	46123836	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	65	262	1	ENST00000334344.6:c.102T>A	p.Phe34Leu	p.F34L	ENST00000334344	NM_152641.2	34	ttT/ttA					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2222176	2222176	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	294	411	0	ENST00000398665.3:c.3008C>G	p.Ala1003Gly	p.A1003G	ENST00000398665	NM_032482.2	1003	gCc/gGc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17955199	17955199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	139	303	0	ENST00000458235.1:c.28C>A	p.Leu10Met	p.L10M	ENST00000458235	NM_000215.3	10	Ctg/Atg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9624771	9624771	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	40	191	0	ENST00000353224.5:c.204+2T>C		p.X68_splice	ENST00000353224	NM_177990.2	68						NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215593477	215593478	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	334	315	0	ENST00000260947.4:c.2256_2257delinsTT	p.Gln752_Gly753delinsHisCys	p.Q752_G753delinsHC	ENST00000260947	NM_000465.2	752	caGGgc/caTTgc					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61149188	61149188	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			385	100	448	0	ENST00000295025.8:c.1378G>A	p.Ala460Thr	p.A460T	ENST00000295025	NM_002908.2	460	Gct/Act					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128044348	128044348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	62	500	1	ENST00000285398.2:c.1273C>T	p.Arg425Ter	p.R425*	ENST00000285398	NM_000122.1	425	Cga/Tga					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99434563	99434563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	97	293	0	ENST00000268035.6:c.650G>A	p.Ser217Asn	p.S217N	ENST00000268035	NM_000875.3	217	aGc/aAc					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2223958	2223958	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			346	36	564	0	ENST00000326181.6:c.1172C>G	p.Thr391Ser	p.T391S	ENST00000326181	NM_032271.2	391	aCc/aGc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76814282	76814282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			463	68	573	0	ENST00000373344.5:c.6362C>A	p.Ser2121Tyr	p.S2121Y	ENST00000373344	NM_000489.3	2121	tCt/tAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577596	7577596	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001618-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			123	153	353	0	ENST00000269305.4:c.685del	p.Cys229ValfsTer18	p.C229Vfs*18	ENST00000269305	NM_001126112.2	229	Tgt/gt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002568-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	42	348	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0002568-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			845	39	530	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	108	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0000762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	162	480	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0000762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			243	185	543	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173510	112173510	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000762-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	116	311	0	ENST00000257430.4:c.2220del	p.Asn741IlefsTer20	p.N741Ifs*20	ENST00000257430	NM_000038.5	740	gCc/gc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002616-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	504	458	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	25	113	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	31	168	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99155369	99155369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	41	225	0	ENST00000074304.5:c.595G>A	p.Asp199Asn	p.D199N	ENST00000074304	NM_001134224.1	199	Gat/Aat					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7982743	7982743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	33	208	0	ENST00000319144.4:c.1042G>C	p.Glu348Gln	p.E348Q	ENST00000319144	NM_001139.2	348	Gag/Cag					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18266702	18266702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	27	129	0	ENST00000222254.8:c.13G>A	p.Glu5Lys	p.E5K	ENST00000222254	NM_005027.3	5	Gag/Aag					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72748169	72748169	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	68	216	0	ENST00000357731.5:c.9G>C	p.Met3Ile	p.M3I	ENST00000357731	NM_173808.2	3	atG/atC					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128750722	128750722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	43	213	0	ENST00000377970.2:c.259C>T	p.Pro87Ser	p.P87S	ENST00000377970	NM_002467.4	87	Ccc/Tcc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112412	115112412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	29	108	0	ENST00000257566.3:c.1328C>T	p.Ser443Leu	p.S443L	ENST00000257566	NM_016569.3	443	tCg/tTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577571	7577571	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	75	114	0	ENST00000269305.4:c.710T>A	p.Met237Lys	p.M237K	ENST00000269305	NM_001126112.2	237	aTg/aAg					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41244882	41244882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	54	187	0	ENST00000357654.3:c.2666C>G	p.Ser889Cys	p.S889C	ENST00000357654	NM_007294.3	889	tCt/tGt					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2210418	2210418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	19	110	0	ENST00000398665.3:c.1025G>A	p.Arg342Gln	p.R342Q	ENST00000398665	NM_032482.2	342	cGg/cAg					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42798191	42798191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	28	157	0	ENST00000575354.2:c.4145C>T	p.Ser1382Leu	p.S1382L	ENST00000575354	NM_015125.3	1382	tCa/tTa					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18699331	18699331	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	82	278	0	ENST00000266497.5:c.3432A>T	p.Gln1144His	p.Q1144H	ENST00000266497		1144	caA/caT					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164856	47164856	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002445-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	73	284	0	ENST00000409792.3:c.1270C>T	p.Arg424Ter	p.R424*	ENST00000409792	NM_014159.6	424	Cga/Tga					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711904	89711904	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002445-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	160	346	0	ENST00000371953.3:c.522T>A	p.Tyr174Ter	p.Y174*	ENST00000371953	NM_000314.4	174	taT/taA					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68844241	68844241	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002445-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	80	275	0	ENST00000261769.5:c.830del	p.Pro277GlnfsTer5	p.P277Qfs*5	ENST00000261769	NM_004360.3	277	Cca/ca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	92	293	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430533	181430533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	85	260	0	ENST00000325404.1:c.385G>A	p.Gly129Ser	p.G129S	ENST00000325404	NM_003106.3	129	Ggc/Agc					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30671830	30671830	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	81	341	0	ENST00000376406.3:c.5130T>G	p.Ile1710Met	p.I1710M	ENST00000376406	NM_014641.2	1710	atT/atG					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741459	17741459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	107	368	0	ENST00000250003.3:c.130G>A	p.Glu44Lys	p.E44K	ENST00000250003	NM_002478.4	44	Gaa/Aaa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108098419	108098419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	80	199	0	ENST00000278616.4:c.68G>A	p.Arg23Gln	p.R23Q	ENST00000278616	NM_000051.3	23	cGa/cAa					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56798140	56798140	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	98	405	0	ENST00000337432.4:c.871G>T	p.Asp291Tyr	p.D291Y	ENST00000337432	NM_058216.2	291	Gat/Tat					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9523285	9523285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	105	394	0	ENST00000353224.5:c.1952C>T	p.Ala651Val	p.A651V	ENST00000353224	NM_177990.2	651	gCg/gTg					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42852482	42852482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	124	361	0	ENST00000398585.3:c.604A>T	p.Arg202Trp	p.R202W	ENST00000398585	NM_001135099.1	202	Agg/Tgg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974769	21974772	+	frameshift_variant	Frame_Shift_Del	DEL	CGGC	CGGC	-			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	55	170	0	ENST00000304494.5:c.55_58del	p.Ala19ArgfsTer6	p.A19Rfs*6	ENST00000304494	NM_000077.4	19	GCCGcg/cg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974769	21974772	+	frameshift_variant	Frame_Shift_Del	DEL	CGGC	CGGC	-			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	55	170	0	ENST00000304494.5:c.55_58del	p.Ala19ArgfsTer6	p.A19Rfs*6	ENST00000304494	NM_000077.4	19	GCCGcg/cg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	GC			P-0003611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	104	323	0	ENST00000256078.4:c.182_183delAAinsGC	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAA/cGC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000214-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			684	458	547	3	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000214-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	384	422	1	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002053-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	145	401	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128851510	128851510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002053-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			902	112	504	0	ENST00000249373.3:c.1835C>T	p.Ala612Val	p.A612V	ENST00000249373	NM_005631.4	612	gCt/gTt					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91352420	91352420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002053-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			838	115	412	0	ENST00000355112.3:c.3805G>A	p.Asp1269Asn	p.D1269N	ENST00000355112	NM_000057.2	1269	Gac/Aac					NEWRECORD																																																																									
EGFL7	0	MSKCC	GRCh37	9	139563042	139563063	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGTCTCCGAGTCGTTCGTG	CCCTGTCTCCGAGTCGTTCGTG	-			P-0002053-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	86	395	0	ENST00000308874.7:c.115_136del	p.Pro39SerfsTer151	p.P39Sfs*151	ENST00000308874		38	gaCCCTGTCTCCGAGTCGTTCGTG/ga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001226-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	42	138	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001226-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	109	264	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28636086	28636086	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001226-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	35	477	0	ENST00000241453.7:c.286G>T	p.Asp96Tyr	p.D96Y	ENST00000241453	NM_004119.2	96	Gac/Tac					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29586109	29586109	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001226-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1012	288	343	0	ENST00000358273.4:c.4392C>G	p.Phe1464Leu	p.F1464L	ENST00000358273	NM_001042492.2	1464	ttC/ttG					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11170774	11170774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001226-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			437	39	376	0	ENST00000344626.4:c.4822C>T	p.Arg1608Trp	p.R1608W	ENST00000344626	NM_003072.3	1608	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000108-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1311	119	349	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123274774	123274774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000108-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	397	358	0	ENST00000358487.5:c.1144T>C	p.Cys382Arg	p.C382R	ENST00000358487	NM_000141.4	382	Tgc/Cgc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41574829	41574829	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000108-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			726	196	345	0	ENST00000263253.7:c.7114A>G	p.Met2372Val	p.M2372V	ENST00000263253	NM_001429.3	2372	Atg/Gtg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001662-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	17	276	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931247	66931247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001662-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	40	314	0	ENST00000374690.3:c.1889G>A	p.Arg630Gln	p.R630Q	ENST00000374690	NM_000044.3	630	cGg/cAg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52620446	52620446	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000362-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	140	367	0	ENST00000394830.3:c.3307G>T	p.Glu1103Ter	p.E1103*	ENST00000394830	NM_018313.4	1103	Gaa/Taa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0004284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	35	291	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178951964	178951964	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	36	424	0	ENST00000263967.3:c.3019G>C	p.Gly1007Arg	p.G1007R	ENST00000263967	NM_006218.2	1007	Ggc/Cgc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183797	10183797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	78	307	0	ENST00000256474.2:c.266T>C	p.Leu89Pro	p.L89P	ENST00000256474	NM_000551.3	89	cTc/cCc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508193	106508193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	30	173	0	ENST00000359195.3:c.187G>A	p.Gly63Ser	p.G63S	ENST00000359195	NM_002649.2	63	Ggc/Agc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28971155	28971155	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	38	421	0	ENST00000282397.4:c.1602T>G	p.Ile534Met	p.I534M	ENST00000282397	NM_002019.4	534	atT/atG					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106552891	106552891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000158-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1158	244	902	0	ENST00000369096.4:c.856C>T	p.Arg286Cys	p.R286C	ENST00000369096	NM_001198.3	286	Cgt/Tgt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49436912	49436912	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000158-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			810	54	465	0	ENST00000301067.7:c.5591delG	p.Gly1864AlafsTer12	p.G1864Afs*12	ENST00000301067	NM_003482.3	1864	gGc/gc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	48	383	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0004390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	22	354	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5222934	5222934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	15	182	0	ENST00000357368.4:c.2869G>A	p.Glu957Lys	p.E957K	ENST00000357368	NM_002850.3	957	Gag/Aag					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	15	251	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108137925	108137925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229022		P-0004390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	38	326	0	ENST00000278616.4:c.2494C>T	p.Arg832Cys	p.R832C	ENST00000278616	NM_000051.3	832	Cgt/Tgt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29592355	29592366	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGGTAAGAAAT	GAGGTAAGAAAT	-			P-0004390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	23	315	0	ENST00000358273.4:c.4833_4835+9del		p.X1611_splice	ENST00000358273	NM_001042492.2	1611						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164211	47164211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			361	22	290	1	ENST00000409792.3:c.1915G>A	p.Glu639Lys	p.E639K	ENST00000409792	NM_014159.6	639	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577064	7577064	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			658	27	371	0	ENST00000269305.4:c.874A>T	p.Lys292Ter	p.K292*	ENST00000269305	NM_001126112.2	292	Aaa/Taa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0000827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	22	459	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45374956	45374956	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			404	25	355	0	ENST00000262160.6:c.887C>A	p.Ser296Ter	p.S296*	ENST00000262160	NM_005901.5	296	tCa/tAa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			593	309	500	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			701	264	521	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56160745	56160745	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	190	424	0	ENST00000399503.3:c.1019T>G	p.Val340Gly	p.V340G	ENST00000399503	NM_005921.1	340	gTg/gGg					NEWRECORD																																																																									
SDHD	0	MSKCC	GRCh37	11	111957672	111957672	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			794	259	436	0	ENST00000375549.3:c.41T>G	p.Leu14Arg	p.L14R	ENST00000375549	NM_003002.3	14	cTa/cGa					NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			941	362	493	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5207956	5207956	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			746	292	539	1	ENST00000357368.4:c.5755C>T	p.Arg1919Trp	p.R1919W	ENST00000357368	NM_002850.3	1919	Cgg/Tgg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175569	112175587	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGGACAAACCATGCCA	CCCTGGACAAACCATGCCA	-			P-0000754-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	320	461	0	ENST00000257430.4:c.4280_4298del	p.Pro1427GlnfsTer40	p.P1427Qfs*40	ENST00000257430	NM_000038.5	1426	agCCCTGGACAAACCATGCCA/ag					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16257536	16257536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002971-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			369	112	405	0	ENST00000375759.3:c.4801G>A	p.Asp1601Asn	p.D1601N	ENST00000375759	NM_015001.2	1601	Gac/Aac					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16255375	16255375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002971-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			634	161	471	0	ENST00000375759.3:c.2640G>C	p.Leu880Phe	p.L880F	ENST00000375759	NM_015001.2	880	ttG/ttC					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			968	810	406	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			824	765	309	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			615	62	316	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193099329	193099329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1045	199	354	0	ENST00000367435.3:c.263G>C	p.Arg88Thr	p.R88T	ENST00000367435	NM_024529.4	88	aGa/aCa					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			587	78	224	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97888824	97888824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1188	125	511	0	ENST00000289081.3:c.883G>T	p.Asp295Tyr	p.D295Y	ENST00000289081	NM_000136.2	295	Gat/Tat					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108099990	108099990	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	36	160	0	ENST00000278616.4:c.271C>T	p.Gln91Ter	p.Q91*	ENST00000278616	NM_000051.3	91	Cag/Tag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108190715	108190715	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			919	51	363	0	ENST00000278616.4:c.6382T>G	p.Leu2128Val	p.L2128V	ENST00000278616	NM_000051.3	2128	Ttg/Gtg					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	347782	347782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1428	103	622	0	ENST00000262320.3:c.1724C>A	p.Ser575Tyr	p.S575Y	ENST00000262320	NM_003502.3	575	tCc/tAc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3789649	3789649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000583-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2002	139	566	0	ENST00000262367.5:c.4210G>A	p.Gly1404Ser	p.G1404S	ENST00000262367	NM_004380.2	1404	Ggc/Agc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	98	162	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	230	308	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	256	332	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	194	275	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131926976	131926976	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	178	338	0	ENST00000265335.6:c.1513A>G	p.Ile505Val	p.I505V	ENST00000265335		505	Ata/Gta					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72831068	72831068	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	361	403	1	ENST00000268489.5:c.5513A>C	p.Gln1838Pro	p.Q1838P	ENST00000268489	NM_006885.3	1838	cAg/cCg					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022592	31022592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	343	288	0	ENST00000375687.4:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000375687	NM_015338.5	693	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579841	7579841	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0003211-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	381	342	0	ENST00000269305.4:c.72del	p.Lys24AsnfsTer20	p.K24Nfs*20	ENST00000269305	NM_001126112.2	24	aaA/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001005-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	81	218	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916947	178916947	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001005-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1004	128	243	0	ENST00000263967.3:c.334A>T	p.Ile112Phe	p.I112F	ENST00000263967	NM_006218.2	112	Atc/Ttc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108178681	108178681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001005-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	40	169	0	ENST00000278616.4:c.5732C>T	p.Ala1911Val	p.A1911V	ENST00000278616	NM_000051.3	1911	gCt/gTt					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001005-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			827	118	363	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70354234	70354234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001005-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1642	93	535	0	ENST00000374080.3:c.4645C>T	p.Arg1549Cys	p.R1549C	ENST00000374080		1549	Cgc/Tgc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0001005-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2007	148	491	0	ENST00000256078.4:c.38_39delinsAA	p.Gly13Glu	p.G13E	ENST00000256078	NM_033360.2	13	gGC/gAA					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140500237	140500237	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			575	250	316	0	ENST00000288602.6:c.905A>G	p.Gln302Arg	p.Q302R	ENST00000288602	NM_004333.4	302	cAg/cGg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108160489	108160489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			222	600	614	0	ENST00000278616.4:c.4397G>A	p.Arg1466Gln	p.R1466Q	ENST00000278616	NM_000051.3	1466	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			307	977	659	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40713427	40713427	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000329-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	532	403	0	ENST00000373198.4:c.4088G>T	p.Arg1363Leu	p.R1363L	ENST00000373198	NM_133170.3	1363	cGg/cTg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001883-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			410	177	430	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66242715	66242715	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0001883-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			452	59	418	0	ENST00000273854.3:c.1856+1G>C		p.X619_splice	ENST00000273854	NM_004439.5	619						NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741178	145741178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001883-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	48	495	0	ENST00000428558.2:c.1228G>C	p.Asp410His	p.D410H	ENST00000428558	NM_004260.3	410	Gat/Cat					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139407524	139407524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001883-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			241	36	409	0	ENST00000277541.6:c.2416T>C	p.Cys806Arg	p.C806R	ENST00000277541	NM_017617.3	806	Tgt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577027	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCTCCCTG	GTGCTCCCTG	-			P-0001883-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	127	500	1	ENST00000269305.4:c.902_911del	p.Pro301LeufsTer41	p.P301Lfs*41	ENST00000269305	NM_001126112.2	301	cCAGGGAGCACt/ct					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002176-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			723	155	339	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1268741	1268741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002176-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	90	261	0	ENST00000310581.5:c.2476G>A	p.Val826Ile	p.V826I	ENST00000310581	NM_198253.2	826	Gtc/Atc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061310	38061310	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002176-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			854	287	318	0	ENST00000250448.2:c.679T>C	p.Cys227Arg	p.C227R	ENST00000250448	NM_004496.3	227	Tgc/Cgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			427	272	643	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175235	112175235	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	59	401	0	ENST00000257430.4:c.3944C>A	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1315	tCa/tAa					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78426167	78426167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	57	288	0	ENST00000370768.2:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000370768	NM_003902.3	453	cCt/cTt					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	175996783	175996783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			685	130	605	0	ENST00000367669.3:c.1654A>G	p.Ile552Val	p.I552V	ENST00000367669	NM_022457.5	552	Att/Gtt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			312	116	326	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81332070	81332070	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002951-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			407	26	422	0	ENST00000222390.5:c.2014G>A	p.Asp672Asn	p.D672N	ENST00000222390	NM_000601.4	672	Gat/Aat					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085678	16085678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	116	362	0	ENST00000281043.3:c.854G>A	p.Arg285Gln	p.R285Q	ENST00000281043	NM_005378.4	285	cGg/cAg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178922340	178922340	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	131	353	0	ENST00000263967.3:c.1109A>G	p.Asn370Ser	p.N370S	ENST00000263967	NM_006218.2	370	aAt/aGt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49438526	49438526	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0003672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	112	331	0	ENST00000301067.7:c.4963+1G>A		p.X1655_splice	ENST00000301067	NM_003482.3	1655						NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060694	38060694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	162	467	1	ENST00000250448.2:c.1295C>T	p.Thr432Met	p.T432M	ENST00000250448	NM_004496.3	432	aCg/aTg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42052726	42052726	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0003672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	161	388	0	ENST00000219905.7:c.7397G>C	p.Arg2466Pro	p.R2466P	ENST00000219905	NM_001164273.1	2466	cGa/cCa					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30050644	30050644	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0003672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	101	310	0	ENST00000338641.4:c.448-2A>G		p.X150_splice	ENST00000338641	NM_000268.3	150						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125250	47125278	+	frameshift_variant	Frame_Shift_Del	DEL	TCACTTATATCCACTGTTTTATCTGGCTG	TCACTTATATCCACTGTTTTATCTGGCTG	-			P-0003672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	187	328	0	ENST00000409792.3:c.5992_6020del	p.Gln1998PhefsTer25	p.Q1998Ffs*25	ENST00000409792	NM_014159.6	1998	CAGCCAGATAAAACAGTGGATATAAGTGAt/t					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163800	47163803	+	frameshift_variant	Frame_Shift_Del	DEL	TAAC	TAAC	-			P-0003672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	177	334	0	ENST00000409792.3:c.2323_2326del	p.Val775LysfsTer22	p.V775Kfs*22	ENST00000409792	NM_014159.6	775	GTTAaa/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	181	123	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190708756	190708756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	296	303	0	ENST00000441310.2:c.649G>T	p.Ala217Ser	p.A217S	ENST00000441310	NM_000534.4	217	Gct/Tct					NEWRECORD																																																																									
MST1	0	MSKCC	GRCh37	3	49723762	49723762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	65	60	0	ENST00000449682.2:c.1000G>C	p.Glu334Gln	p.E334Q	ENST00000449682	NM_020998.3	334	Gaa/Caa					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2154825	2154825	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	92	338	0	ENST00000434045.2:c.396C>A	p.Asp132Glu	p.D132E	ENST00000434045	NM_001127598.1	132	gaC/gaA					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48878062	48878062	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	87	142	2	ENST00000267163.4:c.19del	p.Arg7GlufsTer58	p.R7Efs*58	ENST00000267163	NM_000321.2	5	aCc/ac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	223	538	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0001670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			800	181	472	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0001670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			533	88	339	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921549	178921549	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs1057519941		P-0001670-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	232	368	0	ENST00000263967.3:c.1031T>G	p.Val344Gly	p.V344G	ENST00000263967	NM_006218.2	344	gTg/gGg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001013-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			978	94	544	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77103411	77103411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001013-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			636	50	749	0	ENST00000356341.3:c.155A>T	p.Asp52Val	p.D52V	ENST00000356341	NM_002576.4	52	gAc/gTc					NEWRECORD																																																																									
PDPK1	0	MSKCC	GRCh37	16	2636744	2636744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001013-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			294	17	519	0	ENST00000342085.4:c.1193C>T	p.Ser398Leu	p.S398L	ENST00000342085	NM_002613.4	398	tCa/tTa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49033916	49033916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			26	450	270	0	ENST00000267163.4:c.2053C>T	p.Gln685Ter	p.Q685*	ENST00000267163	NM_000321.2	685	Cag/Tag					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43806103	43806103	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			229	118	276	0	ENST00000372470.3:c.899C>A	p.Thr300Asn	p.T300N	ENST00000372470	NM_005373.2	300	aCc/aAc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89468382	89468382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	195	185	0	ENST00000336596.2:c.1916G>A	p.Arg639His	p.R639H	ENST00000336596	NM_005233.5	639	cGc/cAc					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38968044	38968044	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	138	219	0	ENST00000357387.3:c.1060+1G>A		p.X354_splice	ENST00000357387	NM_152756.3	354						NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056203	26056203	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	189	345	0	ENST00000343677.2:c.454A>T	p.Lys152Ter	p.K152*	ENST00000343677	NM_005319.3	152	Aag/Tag					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163642	32163642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	47	179	0	ENST00000375023.3:c.5584C>G	p.Arg1862Gly	p.R1862G	ENST00000375023	NM_004557.3	1862	Cgg/Ggg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32189009	32189009	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			103	171	267	1	ENST00000375023.3:c.545G>C	p.Cys182Ser	p.C182S	ENST00000375023	NM_004557.3	182	tGc/tCc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151845941	151845941	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			33	291	316	0	ENST00000262189.6:c.13071G>A	p.Trp4357Ter	p.W4357*	ENST00000262189	NM_170606.2	4357	tgG/tgA					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139409852	139409852	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			14	302	247	1	ENST00000277541.6:c.1904G>A	p.Gly635Glu	p.G635E	ENST00000277541	NM_017617.3	635	gGa/gAa					NEWRECORD																																																																									
FGF19	0	MSKCC	GRCh37	11	69518488	69518488	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			63	88	123	0	ENST00000294312.3:c.157C>T	p.His53Tyr	p.H53Y	ENST00000294312	NM_005117.2	53	Cac/Tac					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108203596	108203596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	69	169	0	ENST00000278616.4:c.7896C>G	p.Asn2632Lys	p.N2632K	ENST00000278616	NM_000051.3	2632	aaC/aaG					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425357	49425357	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	44	319	0	ENST00000301067.7:c.13131G>A	p.Trp4377Ter	p.W4377*	ENST00000301067	NM_003482.3	4377	tgG/tgA					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29012455	29012455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			20	373	258	2	ENST00000282397.4:c.416A>G	p.Tyr139Cys	p.Y139C	ENST00000282397	NM_002019.4	139	tAc/tGc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433285	49433285	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			36	134	245	0	ENST00000301067.7:c.8162del	p.Gly2721ValfsTer12	p.G2721Vfs*12	ENST00000301067	NM_003482.3	2721	gGt/gt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578245	7578277	+	inframe_deletion	In_Frame_Del	DEL	GCAAATTTCCTTCCACTCGGATAAGATGCTGAG	GCAAATTTCCTTCCACTCGGATAAGATGCTGAG	-			P-0002658-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			24	200	319	1	ENST00000269305.4:c.572_604del	p.Pro191_Leu201del	p.P191_L201del	ENST00000269305	NM_001126112.2	191	cCTCAGCATCTTATCCGAGTGGAAGGAAATTTGCgt/cgt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001511-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1037	61	826	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212989553	212989553	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001511-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			795	115	611	0	ENST00000342788.4:c.158A>G	p.Tyr53Cys	p.Y53C	ENST00000342788	NM_005235.2	53	tAt/tGt					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59934523	59934523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001511-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1138	150	756	0	ENST00000259008.2:c.275C>T	p.Ser92Leu	p.S92L	ENST00000259008	NM_032043.2	92	tCa/tTa					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	31	549	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	131	497	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat					NEWRECORD																																																																									
IL10	0	MSKCC	GRCh37	1	206943213	206943213	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	27	527	0	ENST00000423557.1:c.405G>C	p.Lys135Asn	p.K135N	ENST00000423557	NM_000572.2	135	aaG/aaC					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398218	25398218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	165	604	0	ENST00000256078.4:c.101C>G	p.Pro34Arg	p.P34R	ENST00000256078	NM_033360.2	34	cCa/cGa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49443509	49443509	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	117	502	0	ENST00000301067.7:c.3862A>T	p.Lys1288Ter	p.K1288*	ENST00000301067	NM_003482.3	1288	Aag/Tag					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577177	64577183	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGAAG	CTTGAAG	-			P-0003824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	139	645	1	ENST00000337652.1:c.399_405del	p.Tyr133Ter	p.Y133*	ENST00000337652	NM_130803.2	133	taCTTCAAG/ta					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88649896	88649903	+	frameshift_variant	Frame_Shift_Del	DEL	ACCTTAGC	ACCTTAGC	-			P-0003824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	28	362	0	ENST00000372037.3:c.148_155del	p.Leu50ArgfsTer18	p.L50Rfs*18	ENST00000372037	NM_004329.2	49	ACCTTAGCa/a					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			857	391	424	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			920	227	489	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56168491	56168492	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0000183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1076	237	445	0	ENST00000399503.3:c.1450_1451delGA	p.Glu484ThrfsTer8	p.E484Tfs*8	ENST00000399503	NM_005921.1	483	AGa/a					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720837	89720837	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000183-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	47	224	0	ENST00000371953.3:c.990delA	p.Asp331ThrfsTer13	p.D331Tfs*13	ENST00000371953	NM_000314.4	330	Aaa/aa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			541	202	405	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			144	76	229	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185190938	185190938	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	177	655	0	ENST00000265026.3:c.1819A>C	p.Lys607Gln	p.K607Q	ENST00000265026	NM_004721.4	607	Aaa/Caa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112170647	112170647	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			388	111	323	0	ENST00000257430.4:c.1744-1G>A		p.X582_splice	ENST00000257430	NM_000038.5	582						NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115114174	115114174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	159	485	0	ENST00000257566.3:c.1043G>A	p.Cys348Tyr	p.C348Y	ENST00000257566	NM_016569.3	348	tGc/tAc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11217299	11217310	+	inframe_deletion	In_Frame_Del	DEL	AGGGCATCCTCC	AGGGCATCCTCC	-			P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	81	450	0	ENST00000361445.4:c.4368_4379del	p.Trp1456_Leu1460delinsCys	p.W1456_L1460delinsC	ENST00000361445	NM_004958.3	1456	tgGGAGGATGCCCTt/tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176027	112176027	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001316-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	92	245	0	ENST00000257430.4:c.4737del	p.Ile1580PhefsTer70	p.I1580Ffs*70	ENST00000257430	NM_000038.5	1579	aTt/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	356	303	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0003599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	309	246	1	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa					NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	164	228	1	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589584	67589613	+	inframe_deletion	In_Frame_Del	DEL	ACATGAATATAACACTCAGTTTCAAGAAAA	ACATGAATATAACACTCAGTTTCAAGAAAA	-			P-0003599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	147	280	0	ENST00000274335.5:c.1348_1377del	p.His450_Lys459del	p.H450_K459del	ENST00000274335		449	ttACATGAATATAACACTCAGTTTCAAGAAAAa/tta					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579867	7579867	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002803-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	60	238	0	ENST00000269305.4:c.46del	p.Gln16ArgfsTer28	p.Q16Rfs*28	ENST00000269305	NM_001126112.2	16	Cag/ag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0000843-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			120	151	163	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0000843-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	380	383	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17955165	17955165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000843-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	380	173	0	ENST00000458235.1:c.62C>T	p.Thr21Met	p.T21M	ENST00000458235	NM_000215.3	21	aCg/aTg					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81335684	81335684	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001699-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			677	41	488	0	ENST00000222390.5:c.1676A>G	p.Glu559Gly	p.E559G	ENST00000222390	NM_000601.4	559	gAg/gGg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18524194	18524194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001699-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			468	157	550	0	ENST00000266497.5:c.1706C>A	p.Thr569Asn	p.T569N	ENST00000266497		569	aCc/aAc					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57857815	57857815	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001699-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1155	280	613	0	ENST00000228682.2:c.134A>T	p.Asn45Ile	p.N45I	ENST00000228682	NM_005269.2	45	aAc/aTc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55565852	55565852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000239-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			924	65	279	0	ENST00000288135.5:c.676G>T	p.Gly226Trp	p.G226W	ENST00000288135	NM_000222.2	226	Ggg/Tgg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32910914	32910914	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000239-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			552	33	164	0	ENST00000380152.3:c.2422G>T	p.Glu808Ter	p.E808*	ENST00000380152		808	Gaa/Taa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039816	47039816	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0000239-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	77	245	0	ENST00000329236.7:c.927-2A>T		p.X309_splice	ENST00000329236	NM_001204466.1	309						NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53245033	53245033	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000239-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1043	56	387	0	ENST00000375401.3:c.907G>C	p.Glu303Gln	p.E303Q	ENST00000375401	NM_004187.3	303	Gaa/Caa					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001793-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	38	359	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001793-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	12	553	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212578340	212578340	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001793-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	19	524	0	ENST00000342788.4:c.917G>A	p.Arg306His	p.R306H	ENST00000342788	NM_005235.2	306	cGt/cAt					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131893092	131893092	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001793-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			103	18	582	1	ENST00000265335.6:c.76A>T	p.Thr26Ser	p.T26S	ENST00000265335		26	Act/Tct					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76890142	76890145	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0001564-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	170	786	0	ENST00000373344.5:c.4749_4752delGAAA	p.Lys1583AsnfsTer22	p.K1583Nfs*22	ENST00000373344	NM_000489.3	1583	aaGAAA/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001564-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	82	418	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711939	89711940	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0001564-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	90	460	0	ENST00000371953.3:c.557_558del	p.Leu186ArgfsTer3	p.L186Rfs*3	ENST00000371953	NM_000314.4	186	cTG/c					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	179	485	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602369	10602369	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	214	499	0	ENST00000171111.5:c.1209G>T	p.Trp403Cys	p.W403C	ENST00000171111	NM_203500.1	403	tgG/tgT					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16257876	16257876	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	86	229	0	ENST00000375759.3:c.5141T>C	p.Met1714Thr	p.M1714T	ENST00000375759	NM_015001.2	1714	aTg/aCg					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55981064	55981064	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	95	413	0	ENST00000263923.4:c.635T>C	p.Ile212Thr	p.I212T	ENST00000263923	NM_002253.2	212	aTt/aCt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398312	25398312	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	96	382	0	ENST00000256078.4:c.7G>T	p.Glu3Ter	p.E3*	ENST00000256078	NM_033360.2	3	Gaa/Taa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49432450	49432450	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	96	496	0	ENST00000301067.7:c.8689G>A	p.Gly2897Ser	p.G2897S	ENST00000301067	NM_003482.3	2897	Ggt/Agt					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102869558	102869558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	93	202	0	ENST00000307046.8:c.83C>T	p.Ser28Phe	p.S28F	ENST00000307046	NM_001111285.1	28	tCc/tTc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220443	1220443	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	206	522	0	ENST00000326873.7:c.536C>G	p.Pro179Arg	p.P179R	ENST00000326873	NM_000455.4	179	cCg/cGg					NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0004315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	196	473	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099479	27099479	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	161	213	0	ENST00000324856.7:c.3715+1G>A		p.X1239_splice	ENST00000324856	NM_006015.4	1239						NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8636823	8636823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	239	260	0	ENST00000356435.5:c.86C>A	p.Thr29Lys	p.T29K	ENST00000356435		29	aCa/aAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579358	7579364	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAAAC	CGGAAAC	-			P-0004153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	171	238	0	ENST00000269305.4:c.323_329del	p.Gly108ValfsTer13	p.G108Vfs*13	ENST00000269305	NM_001126112.2	108	gGTTTCCGt/gt					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591077	67591077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	216	212	0	ENST00000274335.5:c.1670del	p.Arg557GlnfsTer7	p.R557Qfs*7	ENST00000274335		557	cGa/ca					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44935948	44935955	+	frameshift_variant	Frame_Shift_Del	DEL	AGGTAAAA	AGGTAAAA	-			P-0004153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	274	461	0	ENST00000377967.4:c.2710_2717del	p.Gly904TrpfsTer4	p.G904Wfs*4	ENST00000377967	NM_021140.2	903	ctAGGTAAAAat/ctat					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	71873236	71873236	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	129	635	0	ENST00000357731.5:c.958T>G	p.Tyr320Asp	p.Y320D	ENST00000357731	NM_173808.2	320	Tat/Gat					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29592280	29592300	+	inframe_deletion	In_Frame_Del	DEL	TTTGAAAACGTTAAGTATTTT	TTTGAAAACGTTAAGTATTTT	-			P-0003701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	84	440	0	ENST00000358273.4:c.4758_4778del	p.Leu1587_Phe1593del	p.L1587_F1593del	ENST00000358273	NM_001042492.2	1586	gcTTTGAAAACGTTAAGTATTTTc/gcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	121	545	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	233730	233730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	37	183	0	ENST00000264932.6:c.1034G>A	p.Arg345Gln	p.R345Q	ENST00000264932	NM_004168.2	345	cGg/cAg					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	108	241	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52443599	52443601	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0003199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	204	300	0	ENST00000460680.1:c.91_93del	p.Glu31del	p.E31del	ENST00000460680	NM_004656.3	31	GAG/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			342	627	290	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198285196	198285196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	320	227	0	ENST00000335508.6:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000335508	NM_012433.2	124	cGg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112157607	112157607	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			459	667	225	0	ENST00000257430.4:c.1327G>T	p.Glu443Ter	p.E443*	ENST00000257430	NM_000038.5	443	Gaa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			438	145	125	0	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			89	192	152	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29684327	29684327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	578	333	0	ENST00000358273.4:c.7910G>A	p.Arg2637Gln	p.R2637Q	ENST00000358273	NM_001042492.2	2637	cGa/cAa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117706977	117706977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	311	331	0	ENST00000368508.3:c.2173G>A	p.Asp725Asn	p.D725N	ENST00000368508	NM_002944.2	725	Gac/Aac					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8521502	8521502	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			454	241	226	0	ENST00000356435.5:c.736G>T	p.Glu246Ter	p.E246*	ENST00000356435		246	Gaa/Taa					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32450070	32450070	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			266	66	236	0	ENST00000332351.3:c.742G>T	p.Asp248Tyr	p.D248Y	ENST00000332351	NM_024426.4	248	Gat/Tat					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380223	25380223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			676	140	296	0	ENST00000256078.4:c.235C>A	p.Leu79Ile	p.L79I	ENST00000256078	NM_033360.2	79	Ctt/Att					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44929232	44929232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			538	146	238	0	ENST00000377967.4:c.2332C>A	p.Pro778Thr	p.P778T	ENST00000377967	NM_021140.2	778	Cct/Act					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49027109	49027141	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTCATCATGTTTCATATAGGATTCACCTTTAT	TTTCATCATGTTTCATATAGGATTCACCTTTAT	A			P-0000950-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	102	292	0	ENST00000267163.4:c.1696-20_1708delinsA		p.X566_splice	ENST00000267163	NM_000321.2	566						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003630-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			338	60	298	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110438139	110438139	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003630-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			166	21	137	0	ENST00000375856.3:c.262G>A	p.Ala88Thr	p.A88T	ENST00000375856	NM_003749.2	88	Gcg/Acg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002730-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			707	252	673	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002730-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	193	491	0	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100720	8100720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002730-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			581	142	599	0	ENST00000346208.3:c.694G>A	p.Gly232Arg	p.G232R	ENST00000346208		232	Gga/Aga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164582	112164582	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002730-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			337	260	355	0	ENST00000257430.4:c.1657del	p.Trp553GlyfsTer5	p.W553Gfs*5	ENST00000257430	NM_000038.5	552	tcT/tc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001218-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			669	35	287	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1282	128	568	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81355283	81355283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1145	197	516	0	ENST00000222390.5:c.1091G>T	p.Trp364Leu	p.W364L	ENST00000222390	NM_000601.4	364	tGg/tTg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508872	106508872	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			736	89	379	0	ENST00000359195.3:c.866A>G	p.Asn289Ser	p.N289S	ENST00000359195	NM_002649.2	289	aAc/aGc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8319910	8319910	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1044	183	604	0	ENST00000356435.5:c.5591T>A	p.Met1864Lys	p.M1864K	ENST00000356435		1864	aTg/aAg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100285	8100285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			524	68	414	0	ENST00000346208.3:c.259C>A	p.Pro87Thr	p.P87T	ENST00000346208		87	Ccg/Acg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108186830	108186830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			870	112	455	1	ENST00000278616.4:c.6188G>T	p.Gly2063Val	p.G2063V	ENST00000278616	NM_000051.3	2063	gGa/gTa					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3786802	3786802	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			515	50	430	0	ENST00000262367.5:c.4409A>T	p.His1470Leu	p.H1470L	ENST00000262367	NM_004380.2	1470	cAc/cTc					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12016651	12016651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			738	91	410	0	ENST00000353533.5:c.787G>T	p.Asp263Tyr	p.D263Y	ENST00000353533	NM_003010.3	263	Gat/Tat					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15291941	15291941	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002151-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	21	304	0	ENST00000263388.2:c.2825del	p.Gly942AlafsTer2	p.G942Afs*2	ENST00000263388	NM_000435.2	942	gGc/gc					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001794-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			314	187	734	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553761	106553761	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001794-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	76	671	0	ENST00000369096.4:c.1726G>A	p.Glu576Lys	p.E576K	ENST00000369096	NM_001198.3	576	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578282	7578306	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCAGACCTAAGAGCAATCAGTGA	GGCCAGACCTAAGAGCAATCAGTGA	-			P-0001794-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	31	610	0	ENST00000269305.4:c.560-17_567del		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68844174	68844174	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001197-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	24	617	0	ENST00000261769.5:c.762T>A	p.Asp254Glu	p.D254E	ENST00000261769	NM_004360.3	254	gaT/gaA					NEWRECORD																																																																									
MYD88	0	MSKCC	GRCh37	3	38180232	38180232	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001197-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			190	22	637	0	ENST00000396334.3:c.80T>C	p.Val27Ala	p.V27A	ENST00000396334	NM_002468.4	27	gTc/gCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577075	7577075	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001197-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	18	645	0	ENST00000269305.4:c.863delA	p.Asn288IlefsTer57	p.N288Ifs*57	ENST00000269305	NM_001126112.2	288	aAt/at					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			793	348	336	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49405951	49405951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			830	141	358	0	ENST00000418115.1:c.187C>A	p.Gln63Lys	p.Q63K	ENST00000418115	NM_001664.2	63	Cag/Aag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108225543	108225543	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			540	100	339	1	ENST00000278616.4:c.8792G>A	p.Cys2931Tyr	p.C2931Y	ENST00000278616	NM_000051.3	2931	tGt/tAt					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67457342	67457342	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs138550573		P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			511	179	345	2	ENST00000327367.4:c.316A>G	p.Met106Val	p.M106V	ENST00000327367	NM_005902.3	106	Atg/Gtg					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14041653	14041653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			748	126	390	0	ENST00000311895.7:c.2200G>A	p.Gly734Ser	p.G734S	ENST00000311895	NM_005236.2	734	Ggc/Agc					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645415	67645415	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	184	272	0	ENST00000264010.4:c.680A>G	p.Asp227Gly	p.D227G	ENST00000264010	NM_006565.3	227	gAt/gGt					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645504	67645504	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	108	156	0	ENST00000264010.4:c.769A>G	p.Ile257Val	p.I257V	ENST00000264010	NM_006565.3	257	Att/Gtt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306741	41306741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			602	73	286	0	ENST00000373198.4:c.918G>T	p.Trp306Cys	p.W306C	ENST00000373198	NM_133170.3	306	tgG/tgT					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002070-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			987	319	342	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001180-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	55	252	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	417096	417096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001180-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	30	292	0	ENST00000399788.2:c.3454A>T	p.Met1152Leu	p.M1152L	ENST00000399788	NM_001042603.1	1152	Atg/Ttg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			258	216	130	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56178253	56178253	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			784	198	401	1	ENST00000399503.3:c.3226C>G	p.Pro1076Ala	p.P1076A	ENST00000399503	NM_005921.1	1076	Ccc/Gcc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117631302	117631302	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138376257		P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	219	608	0	ENST00000368508.3:c.6376C>T	p.Arg2126Trp	p.R2126W	ENST00000368508	NM_002944.2	2126	Cgg/Tgg					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162206911	162206911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	38	260	0	ENST00000366898.1:c.764C>T	p.Ser255Phe	p.S255F	ENST00000366898	NM_004562.2	255	tCc/tTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			29	105	294	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54948558	54948558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			648	428	509	0	ENST00000312783.6:c.760C>T	p.His254Tyr	p.H254Y	ENST00000312783	NM_198436.1	254	Cat/Tat					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23632691	23632691	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			332	219	371	0	ENST00000261584.4:c.3105delT	p.Ile1035MetfsTer6	p.I1035Mfs*6	ENST00000261584	NM_024675.3	1035	atT/at					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099872	157099873	+	missense_variant	Missense_Mutation	DNP	CC	CC	TA			P-0000469-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			212	276	320	0	ENST00000346085.5:c.809_810delCCinsTA	p.Ser270Leu	p.S270L	ENST00000346085	NM_020732.3	270	tCC/tTA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	57	235	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0003157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	73	167	0	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47058708	47058708	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	48	247	0	ENST00000409792.3:c.7570T>C	p.Cys2524Arg	p.C2524R	ENST00000409792	NM_014159.6	2524	Tgt/Cgt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47058716	47058716	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	45	225	0	ENST00000409792.3:c.7562T>C	p.Leu2521Pro	p.L2521P	ENST00000409792	NM_014159.6	2521	cTg/cCg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47142966	47142966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	57	332	0	ENST00000409792.3:c.4997A>G	p.Tyr1666Cys	p.Y1666C	ENST00000409792	NM_014159.6	1666	tAt/tGt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042305	42042306	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0003157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	116	517	0	ENST00000219905.7:c.6500_6501del	p.Leu2167ArgfsTer27	p.L2167Rfs*27	ENST00000219905	NM_001164273.1	2167	cTG/c					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152382185	152382185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	69	217	0	ENST00000206249.3:c.1295C>T	p.Ser432Leu	p.S432L	ENST00000206249	NM_000125.3	432	tCa/tTa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55130030	55130030	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001483-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	41	412	0	ENST00000257290.5:c.564C>G	p.Ile188Met	p.I188M	ENST00000257290	NM_006206.4	188	atC/atG					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	17	456	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			9	351	349	0	ENST00000269305.4:c.80delC	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508038	106508038	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	87	143	0	ENST00000359195.3:c.32T>G	p.Val11Gly	p.V11G	ENST00000359195	NM_002649.2	11	gTg/gGg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914070	32914070	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	266	555	4	ENST00000380152.3:c.5578A>T	p.Lys1860Ter	p.K1860*	ENST00000380152		1860	Aaa/Taa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88420308	88420308	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			7	258	255	0	ENST00000360948.2:c.2378G>A	p.Arg793Gln	p.R793Q	ENST00000360948	NM_001012338.2	793	cGa/cAa					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46265017	46265019	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0003468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	236	491	0	ENST00000371998.3:c.1890_1892delTGA	p.Asp631del	p.D631del	ENST00000371998		629	tcTGAt/tct					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65312368	65312368	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149968614		P-0003419-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			588	45	298	0	ENST00000342505.4:c.1951G>A	p.Val651Met	p.V651M	ENST00000342505	NM_002227.2	651	Gtg/Atg					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65313336	65313336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003419-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			455	141	299	0	ENST00000342505.4:c.1778C>T	p.Thr593Met	p.T593M	ENST00000342505	NM_002227.2	593	aCg/aTg					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12038893	12038893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003419-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			946	113	325	1	ENST00000396373.4:c.1186A>G	p.Arg396Gly	p.R396G	ENST00000396373	NM_001987.4	396	Aga/Gga					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142272482	142272482	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	70	521	0	ENST00000350721.4:c.2633G>A	p.Arg878Lys	p.R878K	ENST00000350721	NM_001184.3	878	aGg/aAg					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0003432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	33	109	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0003432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	33	109	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64572593	64572593	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	65	397	2	ENST00000337652.1:c.1278C>A	p.Cys426Ter	p.C426*	ENST00000337652	NM_130803.2	426	tgC/tgA					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0003432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	59	648	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765779	66765779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003432-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	23	302	0	ENST00000374690.3:c.791G>A	p.Arg264Gln	p.R264Q	ENST00000374690	NM_000044.3	264	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			531	226	398	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142257388	142257388	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	227	349	0	ENST00000350721.4:c.3661C>A	p.Pro1221Thr	p.P1221T	ENST00000350721	NM_001184.3	1221	Cct/Act					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64136984	64136984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002126-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	53	252	0	ENST00000334205.4:c.1495C>T	p.Arg499Trp	p.R499W	ENST00000334205	NM_003942.2	499	Cgg/Tgg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88420258	88420258	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002828-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			483	58	556	0	ENST00000360948.2:c.2428G>C	p.Glu810Gln	p.E810Q	ENST00000360948	NM_001012338.2	810	Gaa/Caa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66280095	66280095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			509	119	276	0	ENST00000273854.3:c.1594C>T	p.Pro532Ser	p.P532S	ENST00000273854	NM_004439.5	532	Cca/Tca					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187540465	187540465	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			334	68	169	0	ENST00000441802.2:c.7275G>T	p.Leu2425Phe	p.L2425F	ENST00000441802	NM_005245.3	2425	ttG/ttT					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180047286	180047286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			758	215	363	0	ENST00000261937.6:c.2429C>T	p.Thr810Met	p.T810M	ENST00000261937	NM_182925.4	810	aCg/aTg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			368	73	240	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18491483	18491483	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			302	70	156	0	ENST00000266497.5:c.1395+1G>C		p.X465_splice	ENST00000266497		465						NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207078	1207078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			397	196	263	0	ENST00000326873.7:c.166G>T	p.Gly56Trp	p.G56W	ENST00000326873	NM_000455.4	56	Ggg/Tgg					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2193751	2193751	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			446	159	312	0	ENST00000398665.3:c.557A>C	p.Glu186Ala	p.E186A	ENST00000398665	NM_032482.2	186	gAg/gCg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141508	11141508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			416	216	276	0	ENST00000344626.4:c.3485G>T	p.Gly1162Val	p.G1162V	ENST00000344626	NM_003072.3	1162	gGc/gTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40710553	40710553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			399	97	142	0	ENST00000373198.4:c.4298G>C	p.Arg1433Pro	p.R1433P	ENST00000373198	NM_133170.3	1433	cGt/cCt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10599949	10599950	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			554	247	403	0	ENST00000171111.5:c.1626_1627delGA	p.Glu542AspfsTer31	p.E542Dfs*31	ENST00000171111	NM_203500.1	542	gaGAcg/gacg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306733	41306734	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0000427-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			399	86	205	0	ENST00000373198.4:c.925_926delCCinsAA	p.Pro309Lys	p.P309K	ENST00000373198	NM_133170.3	309	CCa/AAa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	268	262	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	117	335	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0003351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1185	166	476	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772227	68772227	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	106	407	0	ENST00000261769.5:c.76G>T	p.Glu26Ter	p.E26*	ENST00000261769	NM_004360.3	26	Gag/Tag					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16021276	16021276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	109	262	0	ENST00000268712.3:c.1981C>T	p.Gln661Ter	p.Q661*	ENST00000268712	NM_006311.3	661	Caa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			162	217	246	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			779	359	263	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717618	89717618	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	106	204	0	ENST00000371953.3:c.643T>C	p.Phe215Leu	p.F215L	ENST00000371953	NM_000314.4	215	Ttt/Ctt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32945237	32945237	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			293	148	181	0	ENST00000380152.3:c.8632G>A	p.Glu2878Lys	p.E2878K	ENST00000380152		2878	Gaa/Aaa					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128851867	128851867	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0000060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			200	137	309	0	ENST00000249373.3:c.1943delC	p.Pro648GlnfsTer128	p.P648Qfs*128	ENST00000249373	NM_005631.4	647	Ccc/cc					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551364	150551381	+	frameshift_variant	Frame_Shift_Del	DEL	GTCGTAAGGTCTCCAGCG	GTCGTAAGGTCTCCAGCG	ATCC			P-0000060-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1561	122	514	0	ENST00000369026.2:c.626_643delCGCTGGAGACCTTACGACinsGGAT	p.Ala209GlyfsTer63	p.A209Gfs*63	ENST00000369026	NM_021960.4	209	gCGCTGGAGACCTTACGACgg/gGGATgg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			347	404	424	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15995188	15995188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			707	93	636	0	ENST00000268712.3:c.3005G>C	p.Arg1002Thr	p.R1002T	ENST00000268712	NM_006311.3	1002	aGa/aCa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27024029	27024029	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			103	13	45	0	ENST00000324856.7:c.1135C>G	p.Gln379Glu	p.Q379E	ENST00000324856	NM_006015.4	379	Cag/Gag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117710794	117710794	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	166	539	0	ENST00000368508.3:c.1478G>T	p.Arg493Leu	p.R493L	ENST00000368508	NM_002944.2	493	cGc/cTc					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91347415	91347415	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			499	45	389	2	ENST00000355112.3:c.3577G>C	p.Glu1193Gln	p.E1193Q	ENST00000355112	NM_000057.2	1193	Gaa/Caa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578446	7578446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	164	368	0	ENST00000269305.4:c.484A>T	p.Ile162Phe	p.I162F	ENST00000269305	NM_001126112.2	162	Atc/Ttc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42799254	42799254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002207-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			360	32	195	0	ENST00000575354.2:c.4738G>C	p.Glu1580Gln	p.E1580Q	ENST00000575354	NM_015125.3	1580	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			834	162	175	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45797759	45797759	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			892	75	149	0	ENST00000372115.3:c.892-1G>T		p.X298_splice	ENST00000372115	NM_001048171.1	298						NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47635608	47635608	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			677	93	113	0	ENST00000233146.2:c.280C>G	p.Leu94Val	p.L94V	ENST00000233146	NM_000251.2	94	Ctg/Gtg					NEWRECORD																																																																									
CTLA4	0	MSKCC	GRCh37	2	204732725	204732725	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			938	121	119	0	ENST00000302823.3:c.60G>T	p.Trp20Cys	p.W20C	ENST00000302823	NM_005214.4	20	tgG/tgT					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89468414	89468414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			597	173	87	0	ENST00000336596.2:c.1948G>T	p.Val650Leu	p.V650L	ENST00000336596	NM_005233.5	650	Gtg/Ttg					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86679595	86679595	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			713	308	101	0	ENST00000274376.6:c.2756C>T	p.Ser919Leu	p.S919L	ENST00000274376	NM_002890.2	919	tCa/tTa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157150533	157150533	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	60	53	0	ENST00000346085.5:c.1715G>C	p.Gly572Ala	p.G572A	ENST00000346085	NM_020732.3	572	gGa/gCa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			744	74	109	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4398067	4398067	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			646	104	132	0	ENST00000261254.3:c.631A>T	p.Ile211Phe	p.I211F	ENST00000261254	NM_001759.3	211	Atc/Ttc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49440412	49440412	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			555	86	93	0	ENST00000301067.7:c.4398G>T	p.Lys1466Asn	p.K1466N	ENST00000301067	NM_003482.3	1466	aaG/aaT					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2222326	2222326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			794	65	162	0	ENST00000326181.6:c.610G>A	p.Glu204Lys	p.E204K	ENST00000326181	NM_032271.2	204	Gag/Aag					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7168073	7168073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			757	55	126	0	ENST00000302850.5:c.1516C>T	p.Arg506Trp	p.R506W	ENST00000302850	NM_000208.2	506	Cgg/Tgg					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164775	36164775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			778	123	142	0	ENST00000300305.3:c.1100G>A	p.Gly367Asp	p.G367D	ENST00000300305		367	gGc/gAc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039611	47039611	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			643	108	115	0	ENST00000329236.7:c.829G>T	p.Glu277Ter	p.E277*	ENST00000329236	NM_001204466.1	277	Gag/Tag					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765309	66765309	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1134	167	186	0	ENST00000374690.3:c.321C>G	p.Tyr107Ter	p.Y107*	ENST00000374690	NM_000044.3	107	taC/taG					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70341596	70341596	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1228	148	169	1	ENST00000374080.3:c.1031C>A	p.Thr344Asn	p.T344N	ENST00000374080		344	aCt/aAt					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59857648	59857649	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0000681-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			567	87	106	0	ENST00000259008.2:c.1908_1909delGGinsCT	p.GluAla636AspSer	p.EA636DS	ENST00000259008	NM_032043.2	636	gaGGct/gaCTct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			326	157	490	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			191	243	250	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2951925	2951925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147381531		P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	135	242	0	ENST00000396946.4:c.3025G>A	p.Val1009Ile	p.V1009I	ENST00000396946	NM_032415.4	1009	Gtc/Atc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			221	314	255	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022346	31022346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1249	70	447	0	ENST00000375687.4:c.1831G>A	p.Ala611Thr	p.A611T	ENST00000375687	NM_015338.5	611	Gcc/Acc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70342648	70342648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1302	489	734	0	ENST00000374080.3:c.1409G>A	p.Arg470His	p.R470H	ENST00000374080		470	cGc/cAc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70357138	70357138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000798-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1682	725	1064	0	ENST00000374080.3:c.5653G>A	p.Val1885Ile	p.V1885I	ENST00000374080		1885	Gtc/Atc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001688-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	325	259	1	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0001688-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			381	17	217	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc					NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22160227	22160227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001688-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			608	249	321	0	ENST00000215832.6:c.404G>A	p.Arg135Lys	p.R135K	ENST00000215832	NM_002745.4	135	aGa/aAa					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202150031	202150031	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001688-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	243	235	0	ENST00000358485.4:c.1472G>A	p.Arg491Gln	p.R491Q	ENST00000358485	NM_001080125.1	491	cGa/cAa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157758	106157758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001688-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			673	174	335	0	ENST00000380013.4:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000380013	NM_001127208.2	887	Gag/Aag					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180038431	180038431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001688-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	47	345	0	ENST00000261937.6:c.3586G>A	p.Glu1196Lys	p.E1196K	ENST00000261937	NM_182925.4	1196	Gag/Aag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49428445	49428445	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001688-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			640	66	348	0	ENST00000301067.7:c.10360C>T	p.Gln3454Ter	p.Q3454*	ENST00000301067	NM_003482.3	3454	Caa/Taa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29548886	29548886	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001688-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	138	269	0	ENST00000358273.4:c.1660C>T	p.Gln554Ter	p.Q554*	ENST00000358273	NM_001042492.2	554	Cag/Tag					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4110623	4110623	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201129499		P-0001688-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			577	175	298	1	ENST00000262948.5:c.334C>T	p.Arg112Trp	p.R112W	ENST00000262948	NM_030662.3	112	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	110	319	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128047071	128047071	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	93	422	0	ENST00000285398.2:c.664A>C	p.Lys222Gln	p.K222Q	ENST00000285398	NM_000122.1	222	Aag/Cag					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30715619	30715619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			384	61	273	0	ENST00000359013.4:c.1352C>T	p.Ala451Val	p.A451V	ENST00000359013	NM_001024847.2	451	gCt/gTt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001235-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	44	556	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16265331	16265331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	277	330	0	ENST00000375759.3:c.10823C>A	p.Ala3608Glu	p.A3608E	ENST00000375759	NM_015001.2	3608	gCg/gAg					NEWRECORD																																																																									
EGFL7	0	MSKCC	GRCh37	9	139564083	139564083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001580-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			516	136	304	0	ENST00000308874.7:c.223C>T	p.Arg75Cys	p.R75C	ENST00000308874		75	Cgc/Tgc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0002215-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			685	76	371	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0002215-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			675	50	287	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128845144	128845144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002215-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			818	71	359	1	ENST00000249373.3:c.638G>T	p.Cys213Phe	p.C213F	ENST00000249373	NM_005631.4	213	tGc/tTc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0003884-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	395	627	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47144880	47144880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003884-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	522	448	0	ENST00000409792.3:c.4873C>T	p.Arg1625Cys	p.R1625C	ENST00000409792	NM_014159.6	1625	Cgt/Tgt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624296	89624296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003884-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	162	273	0	ENST00000371953.3:c.70G>C	p.Asp24His	p.D24H	ENST00000371953	NM_000314.4	24	Gac/Cac					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114710670	114710670	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003884-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	458	831	0	ENST00000543371.1:c.155C>G	p.Ser52Ter	p.S52*	ENST00000543371	NM_001198531.1	52	tCa/tGa					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11984782	11984782	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003884-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	84	284	0	ENST00000353533.5:c.328C>T	p.Arg110Ter	p.R110*	ENST00000353533	NM_003010.3	110	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002356-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1200	1150	693	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002356-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	630	756	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119170354	119170354	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002356-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	523	520	0	ENST00000264033.4:c.2584G>A	p.Glu862Lys	p.E862K	ENST00000264033	NM_005188.3	862	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579336	7579351	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGAATGCAAGAAG	CCCAGAATGCAAGAAG	-			P-0002356-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			933	532	481	0	ENST00000269305.4:c.336_351del	p.Phe113GlnfsTer5	p.F113Qfs*5	ENST00000269305	NM_001126112.2	112	ggCTTCTTGCATTCTGGG/gg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	159	412	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128199974	128199974	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	56	299	0	ENST00000341105.2:c.1331C>A	p.Pro444Gln	p.P444Q	ENST00000341105	NM_032638.4	444	cCg/cAg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220476	1220476	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	219	472	0	ENST00000326873.7:c.569T>G	p.Leu190Arg	p.L190R	ENST00000326873	NM_000455.4	190	cTc/cGc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600369	10600369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			663	223	557	1	ENST00000171111.5:c.1486G>T	p.Glu496Ter	p.E496*	ENST00000171111	NM_203500.1	496	Gag/Tag					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11144090	11144090	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			519	78	435	0	ENST00000344626.4:c.3671T>C	p.Val1224Ala	p.V1224A	ENST00000344626	NM_003072.3	1224	gTg/gCg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88420191	88420191	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			253	52	434	0	ENST00000360948.2:c.2495delC	p.Pro832GlnfsTer15	p.P832Qfs*15	ENST00000360948	NM_001012338.2	832	cCa/ca					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66937397	66937398	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0000426-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			402	36	740	0	ENST00000374690.3:c.2251_2252delGGinsTT	p.Gly751Phe	p.G751F	ENST00000374690	NM_000044.3	751	GGc/TTc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610136	10610136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	262	417	0	ENST00000171111.5:c.574G>A	p.Glu192Lys	p.E192K	ENST00000171111	NM_203500.1	192	Gag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101385	27101385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	204	330	0	ENST00000324856.7:c.4667G>T	p.Gly1556Val	p.G1556V	ENST00000324856	NM_006015.4	1556	gGt/gTt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89468463	89468463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	245	353	0	ENST00000336596.2:c.1997A>G	p.Asp666Gly	p.D666G	ENST00000336596	NM_005233.5	666	gAc/gGc					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55130071	55130071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	373	360	0	ENST00000257290.5:c.605C>A	p.Pro202Gln	p.P202Q	ENST00000257290	NM_006206.4	202	cCa/cAa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157511337	157511337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	89	156	0	ENST00000346085.5:c.3855G>A	p.Met1285Ile	p.M1285I	ENST00000346085	NM_020732.3	1285	atG/atA					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128843246	128843246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	167	354	0	ENST00000249373.3:c.353G>T	p.Cys118Phe	p.C118F	ENST00000249373	NM_005631.4	118	tGc/tTc					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80430648	80430648	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	103	178	0	ENST00000286548.4:c.360G>C	p.Lys120Asn	p.K120N	ENST00000286548	NM_002072.3	120	aaG/aaC					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405200	70405200	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	86	256	0	ENST00000373644.4:c.2714C>G	p.Ser905Ter	p.S905*	ENST00000373644	NM_030625.2	905	tCa/tGa					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741696	17741696	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	176	297	0	ENST00000250003.3:c.367A>T	p.Ser123Cys	p.S123C	ENST00000250003	NM_002478.4	123	Agc/Tgc					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865296	57865296	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	975	584	1	ENST00000228682.2:c.2773T>A	p.Tyr925Asn	p.Y925N	ENST00000228682	NM_005269.2	925	Tac/Aac					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133237751	133237751	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	140	293	0	ENST00000320574.5:c.2865-1G>T		p.X955_splice	ENST00000320574	NM_006231.2	955						NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110434700	110434700	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	153	268	0	ENST00000375856.3:c.3701G>T	p.Ser1234Ile	p.S1234I	ENST00000375856	NM_003749.2	1234	aGc/aTc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3808885	3808885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	335	299	0	ENST00000262367.5:c.3339G>T	p.Gln1113His	p.Q1113H	ENST00000262367	NM_004380.2	1113	caG/caT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	552	446	0	ENST00000269305.4:c.821T>A	p.Val274Asp	p.V274D	ENST00000269305	NM_001126112.2	274	gTt/gAt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15995182	15995182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	219	418	0	ENST00000268712.3:c.3011G>T	p.Trp1004Leu	p.W1004L	ENST00000268712	NM_006311.3	1004	tGg/tTg					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37627955	37627955	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	233	404	0	ENST00000447079.4:c.1870A>T	p.Thr624Ser	p.T624S	ENST00000447079	NM_015083.1	624	Act/Tct					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39647380	39647380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	336	357	0	ENST00000262039.4:c.2552C>T	p.Ser851Leu	p.S851L	ENST00000262039	NM_002647.2	851	tCg/tTg					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716006	52716006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	162	447	0	ENST00000322088.6:c.571G>A	p.Glu191Lys	p.E191K	ENST00000322088	NM_014225.5	191	Gag/Aag					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41420070	41420070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	89	261	0	ENST00000373198.4:c.251C>A	p.Ser84Tyr	p.S84Y	ENST00000373198	NM_133170.3	84	tCt/tAt					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44514606	44514606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	115	230	0	ENST00000291552.4:c.550G>C	p.Glu184Gln	p.E184Q	ENST00000291552	NM_006758.2	184	Gag/Cag					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70341534	70341534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	672	514	0	ENST00000374080.3:c.969G>C	p.Gln323His	p.Q323H	ENST00000374080		323	caG/caC					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939457	76939457	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	137	489	0	ENST00000373344.5:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000373344	NM_000489.3	431	Gag/Tag					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46532758	46532758	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	100	262	0	ENST00000262741.5:c.320del	p.Gly107GlufsTer6	p.G107Efs*6	ENST00000262741	NM_003629.3	107	gGa/ga					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94203726	94203727	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0003165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	143	301	0	ENST00000323929.3:c.927_928delinsTT	p.Met309_Glu310delinsIleTer	p.M309_E310delinsI*	ENST00000323929	NM_005591.3	309	atGGag/atTTag					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29917796	29917796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002640-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	66	249	0	ENST00000389048.3:c.872G>C	p.Arg291Pro	p.R291P	ENST00000389048	NM_004304.4	291	cGc/cCc					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	34	1231	0	ENST00000369535.4:c.182A>C	p.Gln61Pro	p.Q61P	ENST00000369535	NM_002524.4	61	cAa/cCa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0000771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			272	29	859	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70347916	70347916	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000771-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	85	759	0	ENST00000374080.3:c.3155G>T	p.Ser1052Ile	p.S1052I	ENST00000374080		1052	aGc/aTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002577-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			453	443	634	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0002577-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			477	41	429	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002577-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	236	497	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692993	89692993	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002577-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	79	332	0	ENST00000371953.3:c.477G>T	p.Arg159Ser	p.R159S	ENST00000371953	NM_000314.4	159	agG/agT					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0002577-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	99	361	0	ENST00000371953.3:c.389delG	p.Arg130GlnfsTer4	p.R130Qfs*4	ENST00000371953	NM_000314.4	130	cGa/ca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001733-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	297	570	3	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35875627	35875627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001733-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1179	173	507	0	ENST00000303115.3:c.814G>A	p.Val272Ile	p.V272I	ENST00000303115	NM_002185.3	272	Gta/Ata					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509006	106509006	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201525740		P-0001733-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	159	358	1	ENST00000359195.3:c.1000G>A	p.Gly334Ser	p.G334S	ENST00000359195	NM_002649.2	334	Ggc/Agc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31369176	31369176	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001733-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			998	312	531	1	ENST00000328111.2:c.160C>T	p.Arg54Ter	p.R54*	ENST00000328111	NM_006892.3	54	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002683-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			388	360	288	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002683-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			220	98	212	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437766	52437766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002683-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			411	98	260	0	ENST00000460680.1:c.1395C>G	p.Ile465Met	p.I465M	ENST00000460680	NM_004656.3	465	atC/atG					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72427784	72427784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002683-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			216	20	110	1	ENST00000477973.2:c.704C>T	p.Arg236Trp	p.R236W	ENST00000477973	NM_012234.5	236	Cgg/Tgg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187541163	187541163	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002683-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			351	88	214	0	ENST00000441802.2:c.6577G>C	p.Glu2193Gln	p.E2193Q	ENST00000441802	NM_005245.3	2193	Gag/Cag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108138070	108138070	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0002683-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			181	110	211	0	ENST00000278616.4:c.2638+1G>T		p.X880_splice	ENST00000278616	NM_000051.3	880						NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28602329	28602329	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002683-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			299	78	303	0	ENST00000241453.7:c.2039C>A	p.Ala680Glu	p.A680E	ENST00000241453	NM_004119.2	680	gCg/gAg					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28602417	28602417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002683-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			289	36	248	0	ENST00000241453.7:c.1951G>C	p.Asp651His	p.D651H	ENST00000241453	NM_004119.2	651	Gac/Cac					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41245624	41245624	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002683-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			400	138	257	0	ENST00000357654.3:c.1924G>C	p.Asp642His	p.D642H	ENST00000357654	NM_007294.3	642	Gat/Cat					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044742	47044745	+	frameshift_variant	Frame_Shift_Del	DEL	GAAA	GAAA	CG			P-0002683-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			234	53	288	0	ENST00000329236.7:c.1908_1911delinsCG	p.Lys637ValfsTer4	p.K637Vfs*4	ENST00000329236	NM_001204466.1	636	ccGAAA/ccCG					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	1355	358	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597395	10597395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	274	334	0	ENST00000171111.5:c.1808G>T	p.Gly603Val	p.G603V	ENST00000171111	NM_203500.1	603	gGg/gTg					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46743560	46743560	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			395	107	246	0	ENST00000371975.4:c.1941T>A	p.Asp647Glu	p.D647E	ENST00000371975	NM_003579.3	647	gaT/gaA					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2983863	2983863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			699	179	377	0	ENST00000396946.4:c.667C>T	p.Arg223Ter	p.R223*	ENST00000396946	NM_032415.4	223	Cga/Tga					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484300	8484300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			576	275	368	0	ENST00000356435.5:c.3232G>A	p.Glu1078Lys	p.E1078K	ENST00000356435		1078	Gag/Aag					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971155	21971155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			78	57	69	0	ENST00000304494.5:c.203C>A	p.Ala68Glu	p.A68E	ENST00000304494	NM_000077.4	68	gCg/gAg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971155	21971155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			78	57	69	0	ENST00000304494.5:c.203C>A	p.Ala68Glu	p.A68E	ENST00000304494	NM_000077.4	68	gCg/gAg					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061046	38061046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	40	124	0	ENST00000250448.2:c.943G>T	p.Gly315Trp	p.G315W	ENST00000250448	NM_004496.3	315	Ggg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577126	7577126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000924-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			443	249	378	0	ENST00000269305.4:c.812A>T	p.Glu271Val	p.E271V	ENST00000269305	NM_001126112.2	271	gAg/gTg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163512	47163512	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001155-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	111	279	0	ENST00000409792.3:c.2614C>T	p.Gln872Ter	p.Q872*	ENST00000409792	NM_014159.6	872	Caa/Taa					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215645396	215645396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			451	46	425	0	ENST00000260947.4:c.1202G>A	p.Ser401Asn	p.S401N	ENST00000260947	NM_000465.2	401	aGt/aAt					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12647767	12647767	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	56	358	0	ENST00000251849.4:c.613G>C	p.Gly205Arg	p.G205R	ENST00000251849	NM_002880.3	205	Gga/Cga					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52702621	52702621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	41	353	0	ENST00000394830.3:c.277G>A	p.Asp93Asn	p.D93N	ENST00000394830	NM_018313.4	93	Gac/Aac					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187516926	187516926	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	71	316	0	ENST00000441802.2:c.13055C>G	p.Pro4352Arg	p.P4352R	ENST00000441802	NM_005245.3	4352	cCt/cGt					NEWRECORD																																																																									
NPM1	0	MSKCC	GRCh37	5	170818313	170818313	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			667	56	687	0	ENST00000296930.5:c.143G>C	p.Ser48Thr	p.S48T	ENST00000296930	NM_002520.6	48	aGt/aCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578199	7578199	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0000738-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			303	75	489	0	ENST00000269305.4:c.650del	p.Val217GlyfsTer30	p.V217Gfs*30	ENST00000269305	NM_001126112.2	217	gTg/gg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55227832	55227832	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0004225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	48	414	0	ENST00000275493.2:c.1299T>A	p.His433Gln	p.H433Q	ENST00000275493	NM_005228.3	433	caT/caA					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81944246	81944246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	434	870	3	ENST00000359376.3:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000359376	NM_002661.3	619	Gag/Aag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			876	669	296	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27093058	27093058	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0001547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			739	319	294	0	ENST00000324856.7:c.2988+1G>T		p.X996_splice	ENST00000324856	NM_006015.4	996						NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133252086	133252086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			771	79	332	0	ENST00000320574.5:c.1124G>A	p.Arg375Gln	p.R375Q	ENST00000320574	NM_006231.2	375	cGg/cAg					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435798	110435798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	16	41	0	ENST00000375856.3:c.2603C>T	p.Ser868Leu	p.S868L	ENST00000375856	NM_003749.2	868	tCg/tTg					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56438291	56438291	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			696	150	276	0	ENST00000407977.2:c.702G>C	p.Gln234His	p.Q234H	ENST00000407977		234	caG/caC					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106210	27106210	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			911	93	282	0	ENST00000324856.7:c.5823del	p.Phe1941LeufsTer15	p.F1941Lfs*15	ENST00000324856	NM_006015.4	1941	Ttt/tt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	160	255	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56155653	56155653	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200234617		P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	44	207	0	ENST00000399503.3:c.745C>T	p.Arg249Cys	p.R249C	ENST00000399503	NM_005921.1	249	Cgc/Tgc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16255917	16255917	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	30	185	0	ENST00000375759.3:c.3182C>G	p.Ala1061Gly	p.A1061G	ENST00000375759	NM_015001.2	1061	gCc/gGc					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43812197	43812197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			408	72	391	0	ENST00000372470.3:c.1062C>G	p.Phe354Leu	p.F354L	ENST00000372470	NM_005373.2	354	ttC/ttG					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176118155	176118155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			396	27	314	0	ENST00000367669.3:c.818G>T	p.Arg273Ile	p.R273I	ENST00000367669	NM_022457.5	273	aGa/aTa					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241667414	241667414	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	54	334	0	ENST00000366560.3:c.1036G>T	p.Gly346Cys	p.G346C	ENST00000366560	NM_000143.3	346	Ggt/Tgt					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227662185	227662185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			397	201	307	0	ENST00000305123.5:c.1270G>T	p.Gly424Cys	p.G424C	ENST00000305123	NM_005544.2	424	Ggt/Tgt					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242794882	242794882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			409	91	306	0	ENST00000334409.5:c.327C>A	p.Ser109Arg	p.S109R	ENST00000334409	NM_005018.2	109	agC/agA					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142231213	142231213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			387	111	333	0	ENST00000350721.4:c.4741G>T	p.Val1581Leu	p.V1581L	ENST00000350721	NM_001184.3	1581	Gtg/Ttg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187531001	187531001	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			416	111	292	0	ENST00000441802.2:c.10022C>A	p.Thr3341Lys	p.T3341K	ENST00000441802	NM_005245.3	3341	aCg/aAg					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056641	26056641	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	61	71	0	ENST00000343677.2:c.16C>T	p.Pro6Ser	p.P6S	ENST00000343677	NM_005319.3	6	Cct/Tct					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30671021	30671021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	86	275	0	ENST00000376406.3:c.5725G>C	p.Val1909Leu	p.V1909L	ENST00000376406	NM_014641.2	1909	Gtg/Ctg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32170323	32170323	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	130	186	0	ENST00000375023.3:c.3285C>G	p.His1095Gln	p.H1095Q	ENST00000375023	NM_004557.3	1095	caC/caG					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467844	50467844	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	136	205	0	ENST00000331340.3:c.1079G>T	p.Arg360Leu	p.R360L	ENST00000331340	NM_006060.4	360	cGc/cTc					NEWRECORD																																																																									
CD79B	0	MSKCC	GRCh37	17	62006645	62006645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	161	336	0	ENST00000392795.3:c.634G>A	p.Val212Met	p.V212M	ENST00000392795	NM_001039933.1	212	Gtg/Atg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221947	1221947	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	142	307	0	ENST00000326873.7:c.863-1G>T		p.X288_splice	ENST00000326873	NM_000455.4	288						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600447	10600447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	170	357	0	ENST00000171111.5:c.1408C>T	p.Arg470Cys	p.R470C	ENST00000171111	NM_203500.1	470	Cgt/Tgt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141519	11141519	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	171	305	1	ENST00000344626.4:c.3496C>T	p.Gln1166Ter	p.Q1166*	ENST00000344626	NM_003072.3	1166	Cag/Tag					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938646	76938646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			201	109	214	1	ENST00000373344.5:c.2102G>T	p.Arg701Leu	p.R701L	ENST00000373344	NM_000489.3	701	cGt/cTt					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100617162	100617162	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0002969-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			189	158	210	0	ENST00000308731.7:c.587A>T	p.Gln196Leu	p.Q196L	ENST00000308731	NM_000061.2	196	cAg/cTg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			658	138	470	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0002142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			566	84	591	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89391168	89391168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			521	74	452	0	ENST00000336596.2:c.1234G>A	p.Val412Ile	p.V412I	ENST00000336596	NM_005233.5	412	Gtt/Att					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1279534	1279534	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			344	30	543	1	ENST00000310581.5:c.2002G>A	p.Glu668Lys	p.E668K	ENST00000310581	NM_198253.2	668	Gag/Aag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32930634	32930634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	53	512	1	ENST00000380152.3:c.7505G>A	p.Arg2502His	p.R2502H	ENST00000380152		2502	cGc/cAc					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561423	9561423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201131316		P-0002142-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			547	43	592	0	ENST00000353224.5:c.359C>T	p.Ala120Val	p.A120V	ENST00000353224	NM_177990.2	120	gCg/gTg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			446	164	261	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			251	81	440	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202141586	202141586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			720	145	531	0	ENST00000358485.4:c.874C>T	p.Arg292Trp	p.R292W	ENST00000358485	NM_001080125.1	292	Cgg/Tgg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			152	36	212	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118307502	118307502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	73	478	0	ENST00000534358.1:c.275C>T	p.Ser92Leu	p.S92L	ENST00000534358	NM_005933.3	92	tCg/tTg					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12011144	12011144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	138	519	0	ENST00000353533.5:c.551C>T	p.Ser184Leu	p.S184L	ENST00000353533	NM_003010.3	184	tCg/tTg					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65306987	65306987	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	140	524	0	ENST00000342505.4:c.2590G>T	p.Glu864Ter	p.E864*	ENST00000342505	NM_002227.2	864	Gaa/Taa					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65309819	65309819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			557	110	551	0	ENST00000342505.4:c.2331G>C	p.Trp777Cys	p.W777C	ENST00000342505	NM_002227.2	777	tgG/tgC					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193111000	193111000	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	85	377	0	ENST00000367435.3:c.533C>T	p.Ser178Leu	p.S178L	ENST00000367435	NM_024529.4	178	tCa/tTa					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193111022	193111022	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			625	99	406	0	ENST00000367435.3:c.555C>G	p.Ile185Met	p.I185M	ENST00000367435	NM_024529.4	185	atC/atG					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266893	41266893	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			662	156	563	0	ENST00000349496.5:c.564C>G	p.Ile188Met	p.I188M	ENST00000349496	NM_001904.3	188	atC/atG					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49405870	49405870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			574	116	676	0	ENST00000418115.1:c.268G>A	p.Asp90Asn	p.D90N	ENST00000418115	NM_001664.2	90	Gat/Aat					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89390170	89390170	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148593404		P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			515	154	587	0	ENST00000336596.2:c.919G>A	p.Glu307Lys	p.E307K	ENST00000336596	NM_005233.5	307	Gag/Aag					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128204891	128204891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			503	105	559	0	ENST00000341105.2:c.550G>A	p.Asp184Asn	p.D184N	ENST00000341105	NM_032638.4	184	Gac/Aac					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	231100	231100	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			354	68	300	0	ENST00000264932.6:c.880C>G	p.Gln294Glu	p.Q294E	ENST00000264932	NM_004168.2	294	Cag/Gag					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131953918	131953918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			684	127	363	0	ENST00000265335.6:c.3321G>A	p.Met1107Ile	p.M1107I	ENST00000265335		1107	atG/atA					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131953955	131953955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			595	98	322	0	ENST00000265335.6:c.3358G>A	p.Asp1120Asn	p.D1120N	ENST00000265335		1120	Gat/Aat					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131953963	131953963	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	84	307	0	ENST00000265335.6:c.3366T>A	p.Asp1122Glu	p.D1122E	ENST00000265335		1122	gaT/gaA					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176523718	176523718	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140492176		P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	59	519	0	ENST00000292408.4:c.2129G>A	p.Arg710Gln	p.R710Q	ENST00000292408	NM_213647.1	710	cGa/cAa					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176715836	176715836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			794	176	611	0	ENST00000439151.2:c.6168C>G	p.Phe2056Leu	p.F2056L	ENST00000439151	NM_022455.4	2056	ttC/ttG					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20481439	20481439	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			494	102	395	0	ENST00000346618.3:c.508C>A	p.Pro170Thr	p.P170T	ENST00000346618	NM_001949.4	170	Cca/Aca					NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36652203	36652203	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	80	412	0	ENST00000244741.5:c.325G>C	p.Asp109His	p.D109H	ENST00000244741	NM_000389.4	109	Gac/Cac					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157525098	157525098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			651	161	500	1	ENST00000346085.5:c.4993G>T	p.Asp1665Tyr	p.D1665Y	ENST00000346085	NM_020732.3	1665	Gac/Tac					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151846012	151846012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	99	487	0	ENST00000262189.6:c.13000C>T	p.Arg4334Trp	p.R4334W	ENST00000262189	NM_170606.2	4334	Cgg/Tgg					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32450084	32450084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			375	82	508	0	ENST00000332351.3:c.728C>T	p.Ser243Leu	p.S243L	ENST00000332351	NM_024426.4	243	tCa/tTa					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56482351	56482351	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	158	602	0	ENST00000267101.3:c.899C>G	p.Ser300Cys	p.S300C	ENST00000267101	NM_001982.3	300	tCc/tGc					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56495375	56495375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			687	123	591	0	ENST00000267101.3:c.3565G>A	p.Glu1189Lys	p.E1189K	ENST00000267101	NM_001982.3	1189	Gaa/Aaa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28919675	28919675	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	129	509	0	ENST00000282397.4:c.2262G>C	p.Lys754Asn	p.K754N	ENST00000282397	NM_002019.4	754	aaG/aaC					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32929131	32929131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			950	166	590	0	ENST00000380152.3:c.7141C>T	p.Pro2381Ser	p.P2381S	ENST00000380152		2381	Cca/Tca					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32972596	32972596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			673	124	459	0	ENST00000380152.3:c.9946G>C	p.Glu3316Gln	p.E3316Q	ENST00000380152		3316	Gaa/Caa					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105240300	105240300	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	61	455	0	ENST00000349310.3:c.651C>G	p.Phe217Leu	p.F217L	ENST00000349310	NM_001014432.1	217	ttC/ttG					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105242021	105242021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			233	205	601	0	ENST00000349310.3:c.403G>C	p.Glu135Gln	p.E135Q	ENST00000349310	NM_001014432.1	135	Gag/Cag					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2127688	2127688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	88	564	1	ENST00000219476.3:c.2927G>A	p.Arg976Gln	p.R976Q	ENST00000219476	NM_000548.3	976	cGg/cAg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857082	9857082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	105	543	0	ENST00000330684.3:c.4319C>G	p.Ser1440Cys	p.S1440C	ENST00000330684	NM_001134407.1	1440	tCt/tGt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9928088	9928088	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			551	119	377	0	ENST00000330684.3:c.1652-1G>A		p.X551_splice	ENST00000330684	NM_001134407.1	551						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29664405	29664405	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			734	131	498	0	ENST00000358273.4:c.6447G>C	p.Leu2149Phe	p.L2149F	ENST00000358273	NM_001042492.2	2149	ttG/ttC					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63533788	63533788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	61	433	0	ENST00000307078.5:c.1366G>A	p.Gly456Ser	p.G456S	ENST00000307078	NM_004655.3	456	Ggc/Agc					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117707	70117707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	128	710	0	ENST00000245479.2:c.175G>A	p.Asp59Asn	p.D59N	ENST00000245479	NM_000346.3	59	Gat/Aat					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2223448	2223448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			206	50	412	0	ENST00000398665.3:c.3559G>A	p.Glu1187Lys	p.E1187K	ENST00000398665	NM_032482.2	1187	Gag/Aag					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42796942	42796942	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			350	71	514	0	ENST00000575354.2:c.3400C>G	p.Leu1134Val	p.L1134V	ENST00000575354	NM_015125.3	1134	Ctg/Gtg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123182858	123182858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			721	152	549	0	ENST00000218089.9:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000218089	NM_001042749.1	275	Cag/Tag					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	338123	338123	+	stop_lost	Nonstop_Mutation	SNP	C	C	G			P-0002713-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	79	592	0	ENST00000262320.3:c.2588G>C	p.Ter863SerextTer1	p.*863Sext*1	ENST00000262320	NM_003502.3	863	tGa/tCa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0002534-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	782	335	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577495	7577512	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGACCTGGAGTCTTCCAG	TGACCTGGAGTCTTCCAG	-			P-0002534-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	52	234	0	ENST00000269305.4:c.769_782+4del		p.X257_splice	ENST00000269305	NM_001126112.2	257						NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32178656	32178656	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			504	149	205	0	ENST00000375023.3:c.2738C>G	p.Ser913Cys	p.S913C	ENST00000375023	NM_004557.3	913	tCc/tGc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32191686	32191686	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			703	225	421	0	ENST00000375023.3:c.20T>A	p.Leu7Gln	p.L7Q	ENST00000375023	NM_004557.3	7	cTg/cAg					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104356920	104356920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			405	152	208	0	ENST00000369902.3:c.780G>T	p.Glu260Asp	p.E260D	ENST00000369902	NM_016169.3	260	gaG/gaT					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32912279	32912279	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000673-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			529	224	198	0	ENST00000380152.3:c.3787A>C	p.Ser1263Arg	p.S1263R	ENST00000380152		1263	Agt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000230-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			913	197	607	2	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa					NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0000230-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			836	124	628	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000230-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1495	163	509	0	ENST00000263967.3:c.278G>A	p.Arg93Gln	p.R93Q	ENST00000263967	NM_006218.2	93	cGg/cAg					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69456152	69456152	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000230-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1337	243	668	0	ENST00000227507.2:c.71A>G	p.Asn24Ser	p.N24S	ENST00000227507	NM_053056.2	24	aAc/aGc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	162	202	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65309900	65309900	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	178	213	0	ENST00000342505.4:c.2252-2A>G		p.X751_splice	ENST00000342505	NM_002227.2	751						NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005131	150005131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	223	285	0	ENST00000253339.5:c.1094C>A	p.Ala365Asp	p.A365D	ENST00000253339		365	gCt/gAt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152129191	152129191	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	317	366	0	ENST00000206249.3:c.144G>T	p.Lys48Asn	p.K48N	ENST00000206249	NM_000125.3	48	aaG/aaT					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152265517	152265517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	191	209	0	ENST00000206249.3:c.970C>T	p.Pro324Ser	p.P324S	ENST00000206249	NM_000125.3	324	Ccc/Tcc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151856030	151856030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	352	407	0	ENST00000262189.6:c.11588C>T	p.Pro3863Leu	p.P3863L	ENST00000262189	NM_170606.2	3863	cCt/cTt					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145742111	145742111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	116	106	0	ENST00000428558.2:c.392G>T	p.Gly131Val	p.G131V	ENST00000428558	NM_004260.3	131	gGa/gTa					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87635167	87635167	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	230	242	0	ENST00000277120.3:c.2219G>A	p.Ser740Asn	p.S740N	ENST00000277120		740	aGc/aAc					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741928	17741928	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	39	28	0	ENST00000250003.3:c.599C>A	p.Ser200Tyr	p.S200Y	ENST00000250003	NM_002478.4	200	tCc/tAc					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64573153	64573153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	216	274	1	ENST00000337652.1:c.1154C>A	p.Ala385Asp	p.A385D	ENST00000337652	NM_130803.2	385	gCc/gAc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41564823	41564823	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	247	286	0	ENST00000263253.7:c.4124G>T	p.Gly1375Val	p.G1375V	ENST00000263253	NM_001429.3	1375	gGc/gTc					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48018264	48018264	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0002615-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			216	94	206	0	ENST00000234420.5:c.457+2T>G		p.X153_splice	ENST00000234420	NM_000179.2	153						NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183776	10183777	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0002615-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	40	256	1	ENST00000256474.2:c.245_246delinsCT	p.Arg82Pro	p.R82P	ENST00000256474	NM_000551.3	82	cGC/cCT					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38508709	38508709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002615-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			214	115	250	0	ENST00000254066.5:c.757A>G	p.Thr253Ala	p.T253A	ENST00000254066	NM_000964.3	253	Acc/Gcc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52438456	52438469	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGCTGGGCTGACC	AAGCTGGGCTGACC	-			P-0002615-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			114	73	197	0	ENST00000460680.1:c.1250_1250+13del		p.X417_splice	ENST00000460680	NM_004656.3	417						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	88	314	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16024480	16024480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001980-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	45	405	0	ENST00000268712.3:c.1738C>T	p.Arg580Cys	p.R580C	ENST00000268712	NM_006311.3	580	Cgc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0001964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			74	77	454	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			22	40	387	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0001964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			49	47	336	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			812	352	504	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	219	435	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38064108	38064108	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			765	364	406	0	ENST00000250448.2:c.70G>A	p.Glu24Lys	p.E24K	ENST00000250448	NM_004496.3	24	Gag/Aag					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063346	67063346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			320	251	380	0	ENST00000412916.2:c.36C>G	p.Phe12Leu	p.F12L	ENST00000412916		12	ttC/ttG					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			898	478	604	2	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56170966	56170966	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			702	287	440	0	ENST00000399503.3:c.1796delA	p.Asn599MetfsTer57	p.N599Mfs*57	ENST00000399503	NM_005921.1	598	gcA/gc					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56177781	56177781	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001874-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			812	330	454	0	ENST00000399503.3:c.2757delA	p.Lys919AsnfsTer2	p.K919Nfs*2	ENST00000399503	NM_005921.1	918	acA/ac					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138376579	138376580	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0002854-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			945	112	436	0	ENST00000289153.2:c.2894_2895delinsAA	p.Ile965Lys	p.I965K	ENST00000289153	NM_006219.2	965	aTC/aAA					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			39	15	251	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49440548	49440548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001014-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	32	316	0	ENST00000301067.7:c.4262G>T	p.Gly1421Val	p.G1421V	ENST00000301067	NM_003482.3	1421	gGc/gTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			862	496	536	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29519775	29519775	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			672	63	348	0	ENST00000389048.3:c.1796C>A	p.Pro599His	p.P599H	ENST00000389048	NM_004304.4	599	cCt/cAt					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185191005	185191005	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1523	143	923	0	ENST00000265026.3:c.1886C>T	p.Pro629Leu	p.P629L	ENST00000265026	NM_004721.4	629	cCt/cTt					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189455653	189455653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	117	316	0	ENST00000264731.3:c.187G>A	p.Glu63Lys	p.E63K	ENST00000264731	NM_003722.4	63	Gaa/Aaa					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143130067	143130067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			884	79	492	0	ENST00000262992.4:c.949G>A	p.Glu317Lys	p.E317K	ENST00000262992	NM_001101669.1	317	Gaa/Aaa					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30680755	30680755	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1103	96	648	0	ENST00000376406.3:c.964C>T	p.Gln322Ter	p.Q322*	ENST00000376406	NM_014641.2	322	Cag/Tag					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518153	8518153	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			859	70	427	0	ENST00000356435.5:c.1238C>T	p.Ser413Leu	p.S413L	ENST00000356435		413	tCa/tTa					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12038912	12038912	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			804	535	511	0	ENST00000396373.4:c.1205A>G	p.Tyr402Cys	p.Y402C	ENST00000396373	NM_001987.4	402	tAc/tGc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49426639	49426662	+	inframe_deletion	In_Frame_Del	DEL	TGTTGAAGCTGTTGCTGCTGCTGT	TGTTGAAGCTGTTGCTGCTGCTGT	-			P-0000622-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	52	381	0	ENST00000301067.7:c.11826_11849delACAGCAGCAGCAACAGCTTCAACA	p.Gln3947_Gln3954del	p.Q3947_Q3954del	ENST00000301067	NM_003482.3	3942	caACAGCAGCAGCAACAGCTTCAACAg/cag					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71026090	71026090	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0001512-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	292	220	1	ENST00000318789.4:c.1530+2T>G		p.X510_splice	ENST00000318789	NM_032682.5	510						NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001512-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			424	345	317	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116411884	116411903	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTTCTCTCTGTTTTAAGA	TCTTTCTCTCTGTTTTAAGA	-			P-0003735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	48	266	0	ENST00000397752.3:c.2888-16_2891del		p.X963_splice	ENST00000397752	NM_000245.2	963						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002291-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			743	45	537	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002291-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			355	26	256	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0002291-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			929	63	525	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128851477	128851477	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002291-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	36	444	1	ENST00000249373.3:c.1802C>T	p.Ala601Val	p.A601V	ENST00000249373	NM_005631.4	601	gCg/gTg					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71090489	71090496	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGAGTG	TGGGAGTG	-			P-0002291-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			772	46	469	0	ENST00000318789.4:c.852_859del	p.His284GlnfsTer8	p.H284Qfs*8	ENST00000318789	NM_032682.5	284	caCACTCCCAaa/caaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	377	324	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458562	120458562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	42	284	0	ENST00000256646.2:c.6783G>C	p.Glu2261Asp	p.E2261D	ENST00000256646	NM_024408.3	2261	gaG/gaC					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77060289	77060289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	182	279	0	ENST00000356341.3:c.880C>G	p.Gln294Glu	p.Q294E	ENST00000356341	NM_002576.4	294	Cag/Gag					NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30129683	30129683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	78	513	0	ENST00000263025.4:c.530C>T	p.Thr177Ile	p.T177I	ENST00000263025	NM_002746.2	177	aCc/aTc					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63533761	63533764	+	frameshift_variant	Frame_Shift_Del	DEL	GGGA	GGGA	-			P-0003816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	65	239	0	ENST00000307078.5:c.1390_1393del	p.Ser464AlafsTer42	p.S464Afs*42	ENST00000307078	NM_004655.3	464	TCCCgc/gc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108164066	108164078	+	frameshift_variant	Frame_Shift_Del	DEL	GATAGATAACAAG	GATAGATAACAAG	-			P-0003816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	35	256	0	ENST00000278616.4:c.4642_4654del	p.Asp1548MetfsTer11	p.D1548Mfs*11	ENST00000278616	NM_000051.3	1546	gtGATAGATAACAAG/gt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			116	102	442	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			99	23	153	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47058678	47058678	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	91	567	0	ENST00000409792.3:c.7600G>C	p.Glu2534Gln	p.E2534Q	ENST00000409792	NM_014159.6	2534	Gag/Cag					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137519446	137519446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			176	45	355	0	ENST00000367739.4:c.1192C>T	p.His398Tyr	p.H398Y	ENST00000367739	NM_000416.2	398	Cac/Tac					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70426875	70426875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	39	417	0	ENST00000373644.4:c.4535C>G	p.Thr1512Ser	p.T1512S	ENST00000373644	NM_030625.2	1512	aCt/aGt					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133257249	133257249	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			263	81	554	0	ENST00000320574.5:c.229C>T	p.Arg77Cys	p.R77C	ENST00000320574	NM_006231.2	77	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	218	504	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40743877	40743877	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			476	53	398	1	ENST00000392038.2:c.830A>G	p.Lys277Arg	p.K277R	ENST00000392038	NM_001626.4	277	aAg/aGg					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544654	65544654	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0002001-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	200	527	0	ENST00000358664.4:c.272del	p.Gln91ArgfsTer79	p.Q91Rfs*79	ENST00000358664	NM_002382.4	91	cAg/cg					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8073710	8073710	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143947835		P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1475	509	571	0	ENST00000377482.5:c.949C>T	p.Pro317Ser	p.P317S	ENST00000377482	NM_018948.3	317	Ccc/Tcc					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55140760	55140760	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	86	351	0	ENST00000257290.5:c.1621T>A	p.Ser541Thr	p.S541T	ENST00000257290	NM_006206.4	541	Tca/Aca					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187525729	187525729	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	80	222	0	ENST00000441802.2:c.10351-1G>T		p.X3451_splice	ENST00000441802	NM_005245.3	3451						NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8492862	8492862	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	173	275	0	ENST00000356435.5:c.2467G>T	p.Val823Phe	p.V823F	ENST00000356435		823	Gtt/Ttt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8528638	8528638	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	211	364	0	ENST00000356435.5:c.494C>G	p.Pro165Arg	p.P165R	ENST00000356435		165	cCt/cGt					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28959044	28959044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	155	393	0	ENST00000282397.4:c.2094C>A	p.Asn698Lys	p.N698K	ENST00000282397	NM_002019.4	698	aaC/aaA					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30315339	30315339	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	148	258	0	ENST00000322652.5:c.1024A>T	p.Arg342Trp	p.R342W	ENST00000322652	NM_015355.2	342	Agg/Tgg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207088	1207099	+	inframe_deletion	In_Frame_Del	DEL	CTTACGGCAAGG	CTTACGGCAAGG	-			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	221	332	0	ENST00000326873.7:c.176_187del	p.Ser59_Val63delinsLeu	p.S59_V63delinsL	ENST00000326873	NM_000455.4	59	tCTTACGGCAAGGtg/ttg					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2222176	2222176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	133	343	0	ENST00000398665.3:c.3010del	p.His1004ThrfsTer64	p.H1004Tfs*64	ENST00000398665	NM_032482.2	1003	gCc/gc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579471	7579472	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0004250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	131	249	0	ENST00000269305.4:c.215_216delinsT	p.Pro72LeufsTer51	p.P72Lfs*51	ENST00000269305	NM_001126112.2	72	cCC/cT					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30691783	30691783	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000711-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			412	244	408	0	ENST00000359013.4:c.360A>G	p.Ile120Met	p.I120M	ENST00000359013	NM_001024847.2	120	atA/atG					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955570	48955575	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGCT	ATGGCT	G			P-0000711-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			170	100	309	0	ENST00000267163.4:c.1686_1691delinsG	p.Trp563LeufsTer7	p.W563Lfs*7	ENST00000267163	NM_000321.2	562	gcATGGCTc/gcGc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000354-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	37	349	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101904938	101904938	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200518416		P-0000852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			232	155	109	0	ENST00000374994.4:c.926C>T	p.Thr309Met	p.T309M	ENST00000374994	NM_004612.2	309	aCg/aTg					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			113	74	125	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20156720	20156720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000852-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			72	348	94	0	ENST00000379607.5:c.37C>T	p.Arg13Cys	p.R13C	ENST00000379607	NM_001412.3	13	Cgc/Tgc					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206651682	206651682	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0001457-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			434	136	201	0	ENST00000367120.3:c.992C>G	p.Thr331Arg	p.T331R	ENST00000367120	NM_014002.3	331	aCg/aGg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29917777	29917777	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001457-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			645	162	307	1	ENST00000389048.3:c.891G>C	p.Glu297Asp	p.E297D	ENST00000389048	NM_004304.4	297	gaG/gaC					NEWRECORD																																																																									
NPM1	0	MSKCC	GRCh37	5	170837530	170837530	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0001457-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	224	204	0	ENST00000296930.5:c.847-1G>T		p.X283_splice	ENST00000296930	NM_002520.6	283						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578522	7578522	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001457-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			62	322	164	0	ENST00000269305.4:c.408del	p.Gln136HisfsTer34	p.Q136Hfs*34	ENST00000269305	NM_001126112.2	136	caA/ca					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001661-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			237	104	330	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	152	217	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45798590	45798590	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	53	189	0	ENST00000372115.3:c.462G>T	p.Glu154Asp	p.E154D	ENST00000372115	NM_001048171.1	154	gaG/gaT					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178922322	178922322	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	47	179	0	ENST00000263967.3:c.1091G>C	p.Gly364Ala	p.G364A	ENST00000263967	NM_006218.2	364	gGa/gCa					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7126618	7126618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	75	156	0	ENST00000302850.5:c.2990C>T	p.Pro997Leu	p.P997L	ENST00000302850	NM_000208.2	997	cCt/cTt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045872	47045872	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	151	218	0	ENST00000329236.7:c.2434-1G>T		p.X812_splice	ENST00000329236	NM_001204466.1	812						NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	277	447	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0002428-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	43	438	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47630335	47630335	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002428-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	35	303	0	ENST00000233146.2:c.5C>G	p.Ala2Gly	p.A2G	ENST00000233146	NM_000251.2	2	gCg/gGg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212286761	212286761	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002428-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	99	370	0	ENST00000342788.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000342788	NM_005235.2	979	Cga/Tga					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81355257	81355257	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002428-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	81	401	0	ENST00000222390.5:c.1117C>T	p.Arg373Ter	p.R373*	ENST00000222390	NM_000601.4	373	Cga/Tga					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508533	106508533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002428-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			339	31	150	2	ENST00000359195.3:c.527C>T	p.Thr176Met	p.T176M	ENST00000359195	NM_002649.2	176	aCg/aTg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68842633	68842633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002428-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	150	368	0	ENST00000261769.5:c.569A>G	p.Tyr190Cys	p.Y190C	ENST00000261769	NM_004360.3	190	tAc/tGc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	186	387	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	219	309	0	ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16259610	16259610	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	148	384	0	ENST00000375759.3:c.6875C>A	p.Ser2292Ter	p.S2292*	ENST00000375759	NM_015001.2	2292	tCa/tAa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68842339	68842339	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	164	525	2	ENST00000261769.5:c.400G>T	p.Gly134Ter	p.G134*	ENST00000261769	NM_004360.3	134	Gga/Tga					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27092811	27092811	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	167	453	0	ENST00000324856.7:c.2834del	p.Gly945AspfsTer23	p.G945Dfs*23	ENST00000324856	NM_006015.4	944	caG/ca					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0001555-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			75	931	611	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106190770	106190770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001555-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			101	931	551	0	ENST00000380013.4:c.4048G>A	p.Glu1350Lys	p.E1350K	ENST00000380013	NM_001127208.2	1350	Gaa/Aaa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030460	49030461	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0001555-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			2264	1357	592	0	ENST00000267163.4:c.1939_1940del	p.Leu647PhefsTer5	p.L647Ffs*5	ENST00000267163	NM_000321.2	645	acCTct/acct					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001619-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	12	378	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			87	89	316	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0002721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			156	67	418	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151845391	151845391	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			199	105	426	0	ENST00000262189.6:c.13621C>T	p.Arg4541Ter	p.R4541*	ENST00000262189	NM_170606.2	4541	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175233	112175248	+	frameshift_variant	Frame_Shift_Del	DEL	GTCAGCTGAAGATCCT	GTCAGCTGAAGATCCT	-			P-0002721-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	24	321	0	ENST00000257430.4:c.3944_3959del	p.Ser1315Ter	p.S1315*	ENST00000257430	NM_000038.5	1314	agGTCAGCTGAAGATCCT/ag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			128	113	156	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519925		P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			371	160	384	0	ENST00000263967.3:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000263967	NM_006218.2	453	Gaa/Caa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151891615	151891615	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			337	182	340	0	ENST00000262189.6:c.4417C>T	p.Gln1473Ter	p.Q1473*	ENST00000262189	NM_170606.2	1473	Cag/Tag					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65304159	65304159	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			279	146	732	0	ENST00000342505.4:c.2956C>T	p.Gln986Ter	p.Q986*	ENST00000342505	NM_002227.2	986	Cag/Tag					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178948160	178948160	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			311	118	207	0	ENST00000263967.3:c.2932G>C	p.Glu978Gln	p.E978Q	ENST00000263967	NM_006218.2	978	Gag/Cag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56177399	56177399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			363	157	302	0	ENST00000399503.3:c.2372A>G	p.Tyr791Cys	p.Y791C	ENST00000399503	NM_005921.1	791	tAt/tGt					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32187983	32187983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			262	115	441	0	ENST00000375023.3:c.1238C>A	p.Thr413Lys	p.T413K	ENST00000375023	NM_004557.3	413	aCa/aAa					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98211469	98211469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			250	168	430	0	ENST00000331920.6:c.3686C>T	p.Thr1229Met	p.T1229M	ENST00000331920	NM_000264.3	1229	aCg/aTg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139396271	139396271	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			212	106	455	0	ENST00000277541.6:c.5567C>G	p.Ser1856Cys	p.S1856C	ENST00000277541	NM_017617.3	1856	tCt/tGt					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139399191	139399191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			164	77	383	0	ENST00000277541.6:c.4952C>T	p.Ser1651Leu	p.S1651L	ENST00000277541	NM_017617.3	1651	tCg/tTg					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	442781	442781	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			392	233	402	0	ENST00000399788.2:c.1525C>A	p.His509Asn	p.H509N	ENST00000399788	NM_001042603.1	509	Cat/Aat					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105239673	105239673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			300	204	659	1	ENST00000349310.3:c.872C>T	p.Thr291Ile	p.T291I	ENST00000349310	NM_001014432.1	291	aCa/aTa					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91326061	91326061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			359	172	420	0	ENST00000355112.3:c.2565G>A	p.Met855Ile	p.M855I	ENST00000355112	NM_000057.2	855	atG/atA					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29562694	29562694	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			213	236	638	0	ENST00000358273.4:c.3774G>A	p.Trp1258Ter	p.W1258*	ENST00000358273	NM_001042492.2	1258	tgG/tgA					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9525048	9525048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			346	309	570	0	ENST00000353224.5:c.1837G>A	p.Glu613Lys	p.E613K	ENST00000353224	NM_177990.2	613	Gag/Aag					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100611065	100611065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001114-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			330	126	677	0	ENST00000308731.7:c.1541C>T	p.Ser514Leu	p.S514L	ENST00000308731	NM_000061.2	514	tCa/tTa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955574	48955574	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	26	416	0	ENST00000267163.4:c.1690del	p.Leu564SerfsTer47	p.L564Sfs*47	ENST00000267163	NM_000321.2	564	Ctc/tc					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	173	465	0	ENST00000335508.6:c.1874G>T	p.Arg625Leu	p.R625L	ENST00000335508	NM_012433.2	625	cGt/cTt					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411087	63411087	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	166	648	0	ENST00000330258.3:c.2080G>C	p.Asp694His	p.D694H	ENST00000330258	NM_152424.3	694	Gac/Cac					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	122	513	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	132	519	1	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134920482	134920482	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			686	119	578	0	ENST00000398015.3:c.2297C>T	p.Ser766Phe	p.S766F	ENST00000398015	NM_004441.4	766	tCc/tTc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180036946	180036946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	117	735	0	ENST00000261937.6:c.3766G>C	p.Glu1256Gln	p.E1256Q	ENST00000261937	NM_182925.4	1256	Gag/Cag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602806	10602806	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	100	430	0	ENST00000171111.5:c.772G>T	p.Glu258Ter	p.E258*	ENST00000171111	NM_203500.1	258	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579400	7579400	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001163-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			329	54	342	0	ENST00000269305.4:c.287del	p.Ser96LeufsTer27	p.S96Lfs*27	ENST00000269305	NM_001126112.2	96	tCt/tt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188261	10188261	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	76	427	0	ENST00000256474.2:c.404T>A	p.Leu135Ter	p.L135*	ENST00000256474	NM_000551.3	135	tTa/tAa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117725457	117725457	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	17	478	0	ENST00000368508.3:c.424T>A	p.Trp142Arg	p.W142R	ENST00000368508	NM_002944.2	142	Tgg/Agg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52588853	52588853	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	61	304	0	ENST00000394830.3:c.4175del	p.Gly1392AlafsTer40	p.G1392Afs*40	ENST00000394830	NM_018313.4	1392	gGc/gc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44820613	44820614	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	85	253	0	ENST00000377967.4:c.312_313del	p.Leu105IlefsTer20	p.L105Ifs*20	ENST00000377967	NM_021140.2	104	CTc/c					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938029	76938029	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001717-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			219	210	220	1	ENST00000373344.5:c.2719C>T	p.Arg907Ter	p.R907*	ENST00000373344	NM_000489.3	907	Cga/Tga					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55602952	55602952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001806-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			181	88	246	0	ENST00000288135.5:c.2662C>T	p.Arg888Trp	p.R888W	ENST00000288135	NM_000222.2	888	Cgg/Tgg					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55981142	55981142	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001806-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	87	381	0	ENST00000263923.4:c.557C>A	p.Thr186Asn	p.T186N	ENST00000263923	NM_002253.2	186	aCt/aAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001806-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			93	130	268	0	ENST00000269305.4:c.487T>A	p.Tyr163Asn	p.Y163N	ENST00000269305	NM_001126112.2	163	Tac/Aac					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3778503	3778505	+	frameshift_variant	Frame_Shift_Del	DEL	ATG	ATG	TT			P-0001806-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	108	462	0	ENST00000262367.5:c.6543_6545delinsAA	p.Asn2181LysfsTer5	p.N2181Kfs*5	ENST00000262367	NM_004380.2	2181	aaCATg/aaAAg					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	46	55	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99162464	99162464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	30	256	0	ENST00000074304.5:c.982G>C	p.Asp328His	p.D328H	ENST00000074304	NM_001134224.1	328	Gat/Cat					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187527224	187527224	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	63	240	0	ENST00000441802.2:c.10350G>T	p.Gln3450His	p.Q3450H	ENST00000441802	NM_005245.3	3450	caG/caT					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005006	150005006	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	76	265	0	ENST00000253339.5:c.1219C>T	p.Gln407Ter	p.Q407*	ENST00000253339		407	Cag/Tag					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28891642	28891642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	39	373	2	ENST00000282397.4:c.3379C>A	p.Pro1127Thr	p.P1127T	ENST00000282397	NM_002019.4	1127	Cct/Act					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32944600	32944600	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	143	491	1	ENST00000380152.3:c.8393C>G	p.Pro2798Arg	p.P2798R	ENST00000380152		2798	cCt/cGt					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2129108	2129108	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	66	329	0	ENST00000219476.3:c.3042C>G	p.Ser1014Arg	p.S1014R	ENST00000219476	NM_000548.3	1014	agC/agG					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9943751	9943751	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	25	226	0	ENST00000330684.3:c.1190C>A	p.Ser397Tyr	p.S397Y	ENST00000330684	NM_001134407.1	397	tCc/tAc					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50912103	50912103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	116	635	0	ENST00000440232.2:c.1837G>A	p.Ala613Thr	p.A613T	ENST00000440232	NM_002691.3	613	Gcc/Acc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27058094	27058098	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTA	AGGTA	-			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	13	87	0	ENST00000324856.7:c.1803+1_1803+5del		p.X601_splice	ENST00000324856	NM_006015.4	601						NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151879062	151879100	+	inframe_deletion	In_Frame_Del	DEL	GTCATTATTTGTCGTGGAAGAAGAACATAAATCTCTGAC	GTCATTATTTGTCGTGGAAGAAGAACATAAATCTCTGAC	-			P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	71	241	0	ENST00000262189.6:c.5845_5883del	p.Val1949_Asp1961del	p.V1949_D1961del	ENST00000262189	NM_170606.2	1949	GTCAGAGATTTATGTTCTTCTTCCACGACAAATAATGAC/-					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32910937	32910937	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs80359330		P-0003603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	129	588	0	ENST00000380152.3:c.2446del	p.Glu816LysfsTer9	p.E816Kfs*9	ENST00000380152		815	atG/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0002897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			139	38	313	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	44	495	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16004651	16004651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002897-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	41	443	0	ENST00000268712.3:c.2603C>T	p.Ala868Val	p.A868V	ENST00000268712	NM_006311.3	868	gCc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000026-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			261	370	308	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0000026-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			325	468	213	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150004871	150004871	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000026-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			716	109	450	0	ENST00000253339.5:c.1354C>G	p.Pro452Ala	p.P452A	ENST00000253339		452	Cct/Gct					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467844	50467844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000026-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			469	135	323	0	ENST00000331340.3:c.1079G>A	p.Arg360His	p.R360H	ENST00000331340	NM_006060.4	360	cGc/cAc					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178095590	178095590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002177-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1368	226	474	0	ENST00000397062.3:c.1741T>A	p.Tyr581Asn	p.Y581N	ENST00000397062	NM_006164.4	581	Tac/Aac					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431439	49431439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002177-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1014	195	421	0	ENST00000301067.7:c.9700G>A	p.Asp3234Asn	p.D3234N	ENST00000301067	NM_003482.3	3234	Gac/Aac					NEWRECORD																																																																									
RAD51	0	MSKCC	GRCh37	15	41011079	41011079	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002177-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			810	318	438	0	ENST00000267868.3:c.512T>C	p.Leu171Pro	p.L171P	ENST00000267868	NM_002875.4	171	cTg/cCg					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66519068	66519068	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0002177-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1212	107	304	0	ENST00000358598.2:c.348+1G>T		p.X116_splice	ENST00000358598	NM_212471.2	116						NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117631246	117631250	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TACAT	TACAT	-			P-0002177-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			957	202	452	0	ENST00000368508.3:c.6428_6432del	p.Asp2143ValfsTer25	p.D2143Vfs*25	ENST00000368508	NM_002944.2	2143	gATGTA/g					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			479	61	195	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105955	27105955	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			188	93	162	1	ENST00000324856.7:c.5566C>T	p.Gln1856Ter	p.Q1856*	ENST00000324856	NM_006015.4	1856	Cag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	113	157	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108206599	108206599	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			620	199	240	0	ENST00000278616.4:c.8179G>T	p.Val2727Phe	p.V2727F	ENST00000278616	NM_000051.3	2727	Gtc/Ttc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604789	48604789	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			469	201	318	0	ENST00000342988.3:c.1611C>G	p.Asp537Glu	p.D537E	ENST00000342988	NM_005359.5	537	gaC/gaG					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2226697	2226697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			242	35	269	0	ENST00000398665.3:c.4177G>A	p.Gly1393Ser	p.G1393S	ENST00000398665	NM_032482.2	1393	Ggc/Agc					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181431098	181431098	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001287-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	53	146	0	ENST00000325404.1:c.950del	p.Met317SerfsTer54	p.M317Sfs*54	ENST00000325404	NM_003106.3	317	aTg/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000478-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			283	15	273	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49421039	49421039	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001598-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			848	133	161	0	ENST00000301067.7:c.14710C>T	p.Arg4904Ter	p.R4904*	ENST00000301067	NM_003482.3	4904	Cga/Tga					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0001598-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			380	24	168	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1806119	1806119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001598-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1008	709	304	0	ENST00000260795.2:c.1138G>A	p.Gly380Arg	p.G380R	ENST00000260795		380	Ggg/Agg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001598-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			391	158	186	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1807335	1807335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001598-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			917	538	319	0	ENST00000260795.2:c.1584G>C	p.Met528Ile	p.M528I	ENST00000260795		528	atG/atC					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5022015	5022015	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001598-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			771	1045	266	0	ENST00000381652.3:c.28G>C	p.Glu10Gln	p.E10Q	ENST00000381652	NM_004972.3	10	Gaa/Caa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001598-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	174	219	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123263310	123263310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001598-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			230	484	241	0	ENST00000358487.5:c.1433G>A	p.Arg478Lys	p.R478K	ENST00000358487	NM_000141.4	478	aGa/aAa					NEWRECORD																																																																									
RAD51	0	MSKCC	GRCh37	15	41020973	41020973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001598-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1256	270	309	0	ENST00000267868.3:c.595C>T	p.His199Tyr	p.H199Y	ENST00000267868	NM_002875.4	199	Cac/Tac					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88669542	88669542	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001598-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1109	245	291	0	ENST00000360948.2:c.1356G>C	p.Met452Ile	p.M452I	ENST00000360948	NM_001012338.2	452	atG/atC					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002304-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			1076	435	494	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176721946	176721946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002304-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			592	304	411	0	ENST00000439151.2:c.7577C>T	p.Pro2526Leu	p.P2526L	ENST00000439151	NM_022455.4	2526	cCc/cTc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151927376	151927376	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002304-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			91	48	53	0	ENST00000262189.6:c.2800G>T	p.Asp934Tyr	p.D934Y	ENST00000262189	NM_170606.2	934	Gat/Tat					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8500912	8500912	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002304-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			951	73	484	0	ENST00000356435.5:c.1970A>T	p.Asp657Val	p.D657V	ENST00000356435		657	gAc/gTc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061104	38061134	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGCGGCTCTCAGGGCCGCCCTTGGCGCCG	CTTGCGGCTCTCAGGGCCGCCCTTGGCGCCG	-			P-0002304-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			126	51	45	0	ENST00000250448.2:c.855_885del	p.Ser285ArgfsTer26	p.S285Rfs*26	ENST00000250448	NM_004496.3	285	agCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAG/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	168	473	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156837925	156837925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			532	194	411	2	ENST00000524377.1:c.458C>A	p.Ser153Tyr	p.S153Y	ENST00000524377	NM_002529.3	153	tCt/tAt					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55124948	55124948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			689	197	532	0	ENST00000257290.5:c.13C>T	p.His5Tyr	p.H5Y	ENST00000257290	NM_006206.4	5	Cat/Tat					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50455153	50455154	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	96	238	0	ENST00000331340.3:c.700_701delinsTT	p.Gly234Phe	p.G234F	ENST00000331340	NM_006060.4	234	GGc/TTc					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81346571	81346571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			716	184	473	0	ENST00000222390.5:c.1382G>T	p.Trp461Leu	p.W461L	ENST00000222390	NM_000601.4	461	tGg/tTg					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148524287	148524287	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			660	143	431	0	ENST00000320356.2:c.697G>T	p.Asp233Tyr	p.D233Y	ENST00000320356	NM_004456.4	233	Gat/Tat					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857758	9857758	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	167	506	0	ENST00000330684.3:c.3643A>G	p.Arg1215Gly	p.R1215G	ENST00000330684	NM_001134407.1	1215	Aga/Gga					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220391	1220395	+	missense_variant	Missense_Mutation	ONP	GACGG	GACGG	TACTT			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			366	123	402	2	ENST00000326873.7:c.484_488delinsTACTT	p.Asp162_Gly163delinsTyrPhe	p.D162_G163delinsYF	ENST00000326873	NM_000455.4	162	GACGGc/TACTTc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0002837-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			742	172	362	2	ENST00000256078.4:c.38_39delinsAA	p.Gly13Glu	p.G13E	ENST00000256078	NM_033360.2	13	gGC/gAA					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100304	8100304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001474-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	329	596	0	ENST00000346208.3:c.278C>T	p.Ser93Phe	p.S93F	ENST00000346208		93	tCc/tTc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108204684	108204684	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001474-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			49	79	292	0	ENST00000278616.4:c.7999A>T	p.Met2667Leu	p.M2667L	ENST00000278616	NM_000051.3	2667	Atg/Ttg					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112505	115112524	+	frameshift_variant	Frame_Shift_Del	DEL	ACCGCGGGGCTGCCCTTGTC	ACCGCGGGGCTGCCCTTGTC	-			P-0001474-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	139	480	0	ENST00000257566.3:c.1216_1235del	p.Asp406GlnfsTer8	p.D406Qfs*8	ENST00000257566	NM_016569.3	406	GACAAGGGCAGCCCCGCGGTc/c					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188210	10188210	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs5030830		P-0003205-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			357	121	346	0	ENST00000256474.2:c.353T>C	p.Leu118Pro	p.L118P	ENST00000256474	NM_000551.3	118	cTc/cCc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151873888	151873888	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002364-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			225	109	402	0	ENST00000262189.6:c.8650C>T	p.Arg2884Ter	p.R2884*	ENST00000262189	NM_170606.2	2884	Cga/Tga					NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22160188	22160188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002364-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			267	112	369	0	ENST00000215832.6:c.443G>A	p.Arg148His	p.R148H	ENST00000215832	NM_002745.4	148	cGt/cAt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151879491	151879491	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002364-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			257	105	382	0	ENST00000262189.6:c.5454del	p.Asn1818LysfsTer31	p.N1818Kfs*31	ENST00000262189	NM_170606.2	1818	aaT/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	270	489	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204507340	204507340	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	36	328	0	ENST00000367182.3:c.415A>T	p.Ser139Cys	p.S139C	ENST00000367182	NM_001278516.1	139	Agt/Tgt					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43613880	43613880	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	19	326	0	ENST00000355710.3:c.2344G>A	p.Val782Ile	p.V782I	ENST00000355710	NM_020975.4	782	Gtc/Atc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061147	38061203	+	inframe_deletion	In_Frame_Del	DEL	CCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGG	CCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGG	-			P-0004063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			22	27	28	0	ENST00000250448.2:c.786_842del	p.Gln263_Gly281del	p.Q263_G281del	ENST00000250448	NM_004496.3	262	cgCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGa/cga					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911655	32911655	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	68	523	0	ENST00000380152.3:c.3164del	p.Asn1055IlefsTer5	p.N1055Ifs*5	ENST00000380152		1055	Aat/at					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002569-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	238	184	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551591	150551591	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002569-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			740	174	186	0	ENST00000369026.2:c.416C>T	p.Ala139Val	p.A139V	ENST00000369026	NM_021960.4	139	gCt/gTt					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91347510	91347510	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002569-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			286	115	248	0	ENST00000355112.3:c.3672A>C	p.Glu1224Asp	p.E1224D	ENST00000355112	NM_000057.2	1224	gaA/gaC					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30313481	30313481	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002569-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			526	143	269	0	ENST00000262643.3:c.1081C>G	p.Gln361Glu	p.Q361E	ENST00000262643	NM_001238.2	361	Cag/Gag					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53241043	53241043	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002569-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			325	135	161	0	ENST00000375401.3:c.1168C>T	p.Arg390Trp	p.R390W	ENST00000375401	NM_004187.3	390	Cgg/Tgg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0003459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	9	173	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
FGF19	0	MSKCC	GRCh37	11	69514067	69514067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	34	363	0	ENST00000294312.3:c.614G>C	p.Gly205Ala	p.G205A	ENST00000294312	NM_005117.2	205	gGa/gCa					NEWRECORD																																																																									
FGF19	0	MSKCC	GRCh37	11	69514211	69514211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	38	420	0	ENST00000294312.3:c.470G>C	p.Arg157Thr	p.R157T	ENST00000294312	NM_005117.2	157	aGa/aCa					NEWRECORD																																																																									
FGF19	0	MSKCC	GRCh37	11	69514332	69514332	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	31	301	0	ENST00000294312.3:c.349G>T	p.Glu117Ter	p.E117*	ENST00000294312	NM_005117.2	117	Gag/Tag					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66942785	66942785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002096-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	130	756	0	ENST00000374690.3:c.2566C>T	p.Arg856Cys	p.R856C	ENST00000374690	NM_000044.3	856	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004536-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	149	522	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0000296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			97	22	172	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131911514	131911514	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143802516		P-0000296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			343	101	217	0	ENST00000265335.6:c.259C>T	p.Arg87Cys	p.R87C	ENST00000265335		87	Cgt/Tgt					NEWRECORD																																																																									
IDH2	0	MSKCC	GRCh37	15	90630768	90630768	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000296-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			274	30	206	0	ENST00000330062.3:c.718A>G	p.Ile240Val	p.I240V	ENST00000330062	NM_002168.2	240	Atc/Gtc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	80	129	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	90	232	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106158304	106158304	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	49	391	0	ENST00000380013.4:c.3205A>C	p.Thr1069Pro	p.T1069P	ENST00000380013	NM_001127208.2	1069	Acc/Ccc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391373	139391373	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	28	276	0	ENST00000277541.6:c.6818T>C	p.Leu2273Pro	p.L2273P	ENST00000277541	NM_017617.3	2273	cTc/cCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	518	370	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243716154	243716154	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	518	402	1	ENST00000263826.5:c.1040A>G	p.Tyr347Cys	p.Y347C	ENST00000263826	NM_005465.4	347	tAc/tGc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142275399	142275399	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202162034		P-0003080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	59	188	0	ENST00000350721.4:c.1904G>A	p.Arg635Gln	p.R635Q	ENST00000350721	NM_001184.3	635	cGa/cAa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142280209	142280209	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	942	353	1	ENST00000350721.4:c.1225G>T	p.Glu409Ter	p.E409*	ENST00000350721	NM_001184.3	409	Gag/Tag					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189582020	189582020	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	689	283	0	ENST00000264731.3:c.580-1G>A		p.X194_splice	ENST00000264731	NM_003722.4	194						NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412729	139412729	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	210	224	0	ENST00000277541.6:c.1115T>G	p.Leu372Arg	p.L372R	ENST00000277541	NM_017617.3	372	cTc/cGc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70404855	70404855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	94	341	0	ENST00000373644.4:c.2369C>T	p.Ser790Phe	p.S790F	ENST00000373644	NM_030625.2	790	tCt/tTt					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77047132	77047132	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	134	392	0	ENST00000356341.3:c.1412G>A	p.Arg471Lys	p.R471K	ENST00000356341	NM_002576.4	471	aGa/aAa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245532	46245532	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	97	228	0	ENST00000334344.6:c.3626G>C	p.Gly1209Ala	p.G1209A	ENST00000334344	NM_152641.2	1209	gGa/gCa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916929	178916929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000576-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	372	352	0	ENST00000263967.3:c.316G>C	p.Gly106Arg	p.G106R	ENST00000263967	NM_006218.2	106	Ggc/Cgc					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1260593	1260593	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000576-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1393	112	461	0	ENST00000310581.5:c.2966T>A	p.Leu989Ter	p.L989*	ENST00000310581	NM_198253.2	989	tTg/tAg					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23538834	23538834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000576-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	478	375	0	ENST00000380871.4:c.605A>G	p.Glu202Gly	p.E202G	ENST00000380871	NM_006167.3	202	gAg/gGg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	70	661	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212652869	212652869	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	49	540	0	ENST00000342788.4:c.437G>T	p.Gly146Val	p.G146V	ENST00000342788	NM_005235.2	146	gGa/gTa					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35867443	35867443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			406	83	540	0	ENST00000303115.3:c.257G>A	p.Arg86Lys	p.R86K	ENST00000303115	NM_002185.3	86	aGg/aAg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139399488	139399488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			507	71	459	0	ENST00000277541.6:c.4655C>A	p.Ala1552Glu	p.A1552E	ENST00000277541	NM_017617.3	1552	gCg/gAg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591924	48591924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	89	664	0	ENST00000342988.3:c.1087T>C	p.Cys363Arg	p.C363R	ENST00000342988	NM_005359.5	363	Tgt/Cgt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600530	10600530	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0002631-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			448	82	492	0	ENST00000171111.5:c.1326-1G>A		p.X442_splice	ENST00000171111	NM_203500.1	442						NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32893355	32893355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000809-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	145	280	0	ENST00000380152.3:c.209C>G	p.Ser70Cys	p.S70C	ENST00000380152		70	tCt/tGt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0000809-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	163	282	0	ENST00000358273.4:c.6852_6855delTTAC	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765057	66765057	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001087-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	148	698	0	ENST00000374690.3:c.69C>A	p.Phe23Leu	p.F23L	ENST00000374690	NM_000044.3	23	ttC/ttA					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76855032	76855060	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCCCTTTTTTCTTCTTTCTAAAAACAAA	TTCCCTTTTTTCTTCTTTCTAAAAACAAA	GTTTT			P-0001087-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			605	311	574	0	ENST00000373344.5:c.5787-11_5804delinsAAAAC		p.X1929_splice	ENST00000373344	NM_000489.3	1929						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	40	342	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58740518	58740518	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	67	687	0	ENST00000305921.3:c.1423G>T	p.Glu475Ter	p.E475*	ENST00000305921	NM_003620.3	475	Gaa/Taa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70344023	70344023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	41	342	0	ENST00000374080.3:c.1759G>A	p.Glu587Lys	p.E587K	ENST00000374080		587	Gag/Aag					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412033	116412050	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCCAGAAGGTATATT	TTTTCCAGAAGGTATATT	-			P-0004655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	23	316	0	ENST00000397752.3:c.3019_3028+8del		p.X1007_splice	ENST00000397752	NM_000245.2	1007						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0003204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	326	370	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	95	283	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc					NEWRECORD																																																																									
SDHAF2	0	MSKCC	GRCh37	11	61197625	61197625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	98	333	0	ENST00000301761.2:c.7G>A	p.Val3Met	p.V3M	ENST00000301761	NM_017841.2	3	Gtg/Atg					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			240	385	296	1	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098969	178098969	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			742	471	547	1	ENST00000397062.3:c.76C>A	p.Gln26Lys	p.Q26K	ENST00000397062	NM_006164.4	26	Caa/Aaa					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18650676	18650676	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000965-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	195	249	0	ENST00000266497.5:c.2887G>C	p.Asp963His	p.D963H	ENST00000266497		963	Gac/Cac					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759651	133759651	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	122	296	1	ENST00000318560.5:c.1974G>T	p.Lys658Asn	p.K658N	ENST00000318560	NM_005157.4	658	aaG/aaT					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123256179	123256179	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	159	329	0	ENST00000358487.5:c.1730G>A	p.Arg577Gln	p.R577Q	ENST00000358487	NM_000141.4	577	cGa/cAa					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30303467	30303467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	25	34	0	ENST00000262643.3:c.5C>T	p.Pro2Leu	p.P2L	ENST00000262643	NM_001238.2	2	cCg/cTg					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30000103	30000103	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0004266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	186	366	0	ENST00000338641.4:c.114+2T>A		p.X38_splice	ENST00000338641	NM_000268.3	38						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1045	29	529	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			779	47	390	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544755	65544755	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0002989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	59	315	0	ENST00000358664.4:c.172-1G>T		p.X58_splice	ENST00000358664	NM_002382.4	58						NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591135	67591137	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0002989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			695	290	348	0	ENST00000274335.5:c.1728_1730delGAG	p.Arg577del	p.R577del	ENST00000274335		576	acGAGa/aca					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66535442	66535442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	209	86	0	ENST00000273854.3:c.19C>T	p.Arg7Trp	p.R7W	ENST00000273854	NM_004439.5	7	Cgg/Tgg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509978	106509978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	216	286	0	ENST00000359195.3:c.1972C>T	p.His658Tyr	p.H658Y	ENST00000359195	NM_002649.2	658	Cat/Tat					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151835937	151835937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	341	394	0	ENST00000262189.6:c.14587G>A	p.Glu4863Lys	p.E4863K	ENST00000262189	NM_170606.2	4863	Gag/Aag					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46244298	46244298	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	257	326	0	ENST00000334344.6:c.2392C>T	p.Gln798Ter	p.Q798*	ENST00000334344	NM_152641.2	798	Cag/Tag					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111856445	111856445	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	323	140	0	ENST00000341259.2:c.496C>T	p.Pro166Ser	p.P166S	ENST00000341259	NM_005475.2	166	Ccc/Tcc					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111856464	111856464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	345	151	0	ENST00000341259.2:c.515C>A	p.Thr172Asn	p.T172N	ENST00000341259	NM_005475.2	172	aCc/aAc					NEWRECORD																																																																									
CD79B	0	MSKCC	GRCh37	17	62009584	62009584	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	417	297	0	ENST00000392795.3:c.38G>A	p.Trp13Ter	p.W13*	ENST00000392795	NM_001039933.1	13	tGg/tAg					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720812	89720812	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	20	86	0	ENST00000371953.3:c.968del	p.Asn323MetfsTer21	p.N323Mfs*21	ENST00000371953	NM_000314.4	321	acA/ac					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007620	45007620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	34	144	0	ENST00000558401.1:c.68-1G>T		p.X23_splice	ENST00000558401	NM_004048.2	23						NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90965666	90965666	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	50	373	1	ENST00000265433.3:c.1651del	p.Arg551GlyfsTer8	p.R551Gfs*8	ENST00000265433	NM_002485.4	551	Agg/gg					NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	50	276	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	22	159	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118343697	118343697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	45	242	0	ENST00000534358.1:c.1823G>A	p.Arg608Gln	p.R608Q	ENST00000534358	NM_005933.3	608	cGa/cAa					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99454555	99454555	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs61740877		P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	45	223	0	ENST00000268035.6:c.1474G>A	p.Val492Ile	p.V492I	ENST00000268035	NM_000875.3	492	Gtc/Atc					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185183540	185183540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	35	243	0	ENST00000265026.3:c.1394C>T	p.Ala465Val	p.A465V	ENST00000265026	NM_004721.4	465	gCg/gTg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187539018	187539018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	41	430	0	ENST00000441802.2:c.8722G>A	p.Val2908Ile	p.V2908I	ENST00000441802	NM_005245.3	2908	Gtc/Atc					NEWRECORD																																																																									
KMT2C	58508	MSKCC	GRCh37	7	151845524	151845524	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	30	294	0	ENST00000262189.6:c.13488del	p.Phe4496LeufsTer21	p.F4496Lfs*21	ENST00000262189	NM_170606.2	4496	ttT/tt					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115252317	115252317	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	37	357	0	ENST00000369535.4:c.323A>G	p.Asp108Gly	p.D108G	ENST00000369535	NM_002524.4	108	gAt/gGt					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41277254	41277254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	48	262	0	ENST00000349496.5:c.1723G>A	p.Gly575Arg	p.G575R	ENST00000349496	NM_001904.3	575	Gga/Aga					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142177928	142177928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	38	233	0	ENST00000350721.4:c.7375C>T	p.Arg2459Cys	p.R2459C	ENST00000350721	NM_001184.3	2459	Cgt/Tgt					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1293833	1293833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	53	267	0	ENST00000310581.5:c.1168C>T	p.Arg390Trp	p.R390W	ENST00000310581	NM_198253.2	390	Cgg/Tgg					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176562403	176562403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	30	249	0	ENST00000439151.2:c.299C>A	p.Pro100His	p.P100H	ENST00000439151	NM_022455.4	100	cCt/cAt					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287346	33287346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	44	325	0	ENST00000374542.5:c.1751C>T	p.Thr584Met	p.T584M	ENST00000374542	NM_001141970.1	584	aCg/aTg					NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157488293	157488293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs750810656		P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	34	148	0	ENST00000346085.5:c.2999C>T	p.Ala1000Val	p.A1000V	ENST00000346085	NM_020732.3	1000	gCg/gTg					NEWRECORD																																																																									
INHBA	3624	MSKCC	GRCh37	7	41729727	41729727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	64	434	0	ENST00000242208.4:c.802G>A	p.Glu268Lys	p.E268K	ENST00000242208	NM_002192.2	268	Gaa/Aaa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50468032	50468032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	59	257	0	ENST00000331340.3:c.1267C>T	p.Arg423Cys	p.R423C	ENST00000331340	NM_006060.4	423	Cgc/Tgc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151856027	151856027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	45	389	0	ENST00000262189.6:c.11591G>A	p.Arg3864His	p.R3864H	ENST00000262189	NM_170606.2	3864	cGc/cAc					NEWRECORD																																																																									
XRCC2	0	MSKCC	GRCh37	7	152346031	152346031	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	53	461	0	ENST00000359321.1:c.539T>C	p.Leu180Ser	p.L180S	ENST00000359321	NM_005431.1	180	tTa/tCa					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87563405	87563405	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147652140		P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	48	226	0	ENST00000277120.3:c.1793G>A	p.Arg598His	p.R598H	ENST00000277120		598	cGc/cAc					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93606304	93606304	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	62	277	0	ENST00000375746.1:c.124C>T	p.Arg42Cys	p.R42C	ENST00000375746	NM_001174167.1	42	Cgc/Tgc					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135787731	135787731	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs151309813		P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	38	323	2	ENST00000298552.3:c.851G>A	p.Arg284His	p.R284H	ENST00000298552	NM_001162426.1	284	cGc/cAc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115907	8115907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	55	198	0	ENST00000346208.3:c.1253C>T	p.Thr418Met	p.T418M	ENST00000346208		418	aCg/aTg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118369241	118369241	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	40	176	0	ENST00000534358.1:c.5959G>A	p.Glu1987Lys	p.E1987K	ENST00000534358	NM_005933.3	1987	Gaa/Aaa					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	11905391	11905391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	51	224	1	ENST00000396373.4:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000396373	NM_001987.4	14	cGa/cAa					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56489582	56489582	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56387488		P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	26	189	0	ENST00000267101.3:c.2047C>T	p.Arg683Trp	p.R683W	ENST00000267101	NM_001982.3	683	Cgg/Tgg					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102813307	102813307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	48	242	0	ENST00000307046.8:c.382G>A	p.Asp128Asn	p.D128N	ENST00000307046	NM_001111285.1	128	Gac/Aac					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121426776	121426776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	79	366	1	ENST00000257555.6:c.467C>T	p.Thr156Met	p.T156M	ENST00000257555		156	aCg/aTg					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73337731	73337731	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	36	292	0	ENST00000377767.4:c.1985T>C	p.Met662Thr	p.M662T	ENST00000377767	NM_014953.3	662	aTg/aCg					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110434592	110434592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	46	171	2	ENST00000375856.3:c.3809C>A	p.Pro1270Gln	p.P1270Q	ENST00000375856	NM_003749.2	1270	cCg/cAg					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110434745	110434745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	41	264	0	ENST00000375856.3:c.3656C>T	p.Pro1219Leu	p.P1219L	ENST00000375856	NM_003749.2	1219	cCg/cTg					NEWRECORD																																																																									
NFKBIA	0	MSKCC	GRCh37	14	35872045	35872045	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	66	402	0	ENST00000216797.5:c.568G>A	p.Ala190Thr	p.A190T	ENST00000216797	NM_020529.2	190	Gcc/Acc					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23634318	23634318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	47	385	0	ENST00000261584.4:c.2968G>A	p.Glu990Lys	p.E990K	ENST00000261584	NM_024675.3	990	Gaa/Aaa					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67662394	67662394	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	60	326	0	ENST00000264010.4:c.1640A>G	p.Asp547Gly	p.D547G	ENST00000264010	NM_006565.3	547	gAc/gGc					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40376843	40376843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	65	538	0	ENST00000293328.3:c.329G>A	p.Arg110His	p.R110H	ENST00000293328	NM_012448.3	110	cGc/cAc					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56436149	56436149	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	60	317	0	ENST00000407977.2:c.988C>T	p.Arg330Ter	p.R330*	ENST00000407977		330	Cga/Tga					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63530162	63530162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	61	341	2	ENST00000307078.5:c.2273C>T	p.Ala758Val	p.A758V	ENST00000307078	NM_004655.3	758	gCg/gTg					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1611735	1611735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	67	366	1	ENST00000344749.5:c.1927G>A	p.Glu643Lys	p.E643K	ENST00000344749	NM_001136139.2	643	Gaa/Aaa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141492	11141492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	69	311	1	ENST00000344626.4:c.3469C>T	p.Arg1157Trp	p.R1157W	ENST00000344626	NM_003072.3	1157	Cgg/Tgg					NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50905495	50905495	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs774030917		P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	59	360	1	ENST00000440232.2:c.623C>T	p.Pro208Leu	p.P208L	ENST00000440232	NM_002691.3	208	cCg/cTg					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716039	52716039	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	57	326	0	ENST00000322088.6:c.604A>G	p.Lys202Glu	p.K202E	ENST00000322088	NM_014225.5	202	Aag/Gag					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164469	36164469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	35	101	0	ENST00000300305.3:c.1406C>T	p.Ser469Phe	p.S469F	ENST00000300305		469	tCc/tTc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53225926	53225926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	59	334	0	ENST00000375401.3:c.2923G>A	p.Glu975Lys	p.E975K	ENST00000375401	NM_004187.3	975	Gaa/Aaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	179	461	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440384	52440384	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	29	216	0	ENST00000460680.1:c.668A>T	p.Tyr223Phe	p.Y223F	ENST00000460680	NM_004656.3	223	tAc/tTc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89391162	89391162	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	62	368	0	ENST00000336596.2:c.1228G>T	p.Asp410Tyr	p.D410Y	ENST00000336596	NM_005233.5	410	Gat/Tat					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187538936	187538936	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	67	535	0	ENST00000441802.2:c.8804G>C	p.Gly2935Ala	p.G2935A	ENST00000441802	NM_005245.3	2935	gGg/gCg					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729881	41729881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	86	719	0	ENST00000242208.4:c.648C>A	p.Ser216Arg	p.S216R	ENST00000242208	NM_002192.2	216	agC/agA					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46230734	46230734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	29	461	0	ENST00000334344.6:c.983G>T	p.Arg328Met	p.R328M	ENST00000334344	NM_152641.2	328	aGg/aTg					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39934087	39934087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	25	503	0	ENST00000378444.4:c.512C>A	p.Pro171His	p.P171H	ENST00000378444	NM_001123385.1	171	cCt/cAt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47038563	47038563	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	68	509	0	ENST00000329236.7:c.493+1G>T		p.X165_splice	ENST00000329236	NM_001204466.1	165						NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410226	63410226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	32	435	0	ENST00000330258.3:c.2941G>A	p.Asp981Asn	p.D981N	ENST00000330258	NM_152424.3	981	Gac/Aac					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766532	66766532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	79	626	0	ENST00000374690.3:c.1544C>A	p.Pro515His	p.P515H	ENST00000374690	NM_000044.3	515	cCc/cAc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29588875	29588876	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0003584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	60	412	0	ENST00000358273.4:c.4724_4724+1delinsTT		p.X1575_splice	ENST00000358273	NM_001042492.2	1575						NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5231404	5231404	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002522-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			130	15	312	0	ENST00000357368.4:c.2072A>T	p.Gln691Leu	p.Q691L	ENST00000357368	NM_002850.3	691	cAg/cTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	390	316	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123239454	123239454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	179	330	0	ENST00000358487.5:c.2383G>A	p.Asp795Asn	p.D795N	ENST00000358487	NM_000141.4	795	Gat/Aat					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78796006	78796006	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004213-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	161	226	0	ENST00000306801.3:c.896C>G	p.Pro299Arg	p.P299R	ENST00000306801	NM_020761.2	299	cCt/cGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0004546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	16	369	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162725042	162725042	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	38	439	0	ENST00000367921.3:c.514C>A	p.His172Asn	p.H172N	ENST00000367921	NM_006182.2	172	Cac/Aac					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937694	76937694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			872	208	700	0	ENST00000373344.5:c.3054G>T	p.Lys1018Asn	p.K1018N	ENST00000373344	NM_000489.3	1018	aaG/aaT					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56189396	56189396	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0001149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			678	110	411	0	ENST00000399503.3:c.4430del	p.Leu1477CysfsTer13	p.L1477Cfs*13	ENST00000399503	NM_005921.1	1476	caT/ca					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115839	8115843	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCT	CCTCT	-			P-0001149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	138	491	0	ENST00000346208.3:c.1187_1191del	p.Leu396GlnfsTer109	p.L396Qfs*109	ENST00000346208		395	gcCCTCTcc/gccc					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56178163	56178169	+	stop_gained,protein_altering_variant	Nonsense_Mutation	DEL	TTTACTC	TTTACTC	GAGT			P-0001149-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	75	349	0	ENST00000399503.3:c.3136_3142delinsGAGT	p.Phe1046_Gln1048delinsGluTer	p.F1046_Q1048delinsE*	ENST00000399503	NM_005921.1	1046	TTTACTCag/GAGTag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	197	371	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	159	313	0	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	116	378	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3790494	3790494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	64	370	2	ENST00000262367.5:c.4039C>T	p.Arg1347Trp	p.R1347W	ENST00000262367	NM_004380.2	1347	Cgg/Tgg					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56871638	56871638	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs199837299		P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	99	298	0	ENST00000308159.5:c.2018G>A	p.Arg673Gln	p.R673Q	ENST00000308159	NM_014669.4	673	cGg/cAg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119774	70119774	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	248	372	0	ENST00000245479.2:c.776T>A	p.Leu259Ter	p.L259*	ENST00000245479	NM_000346.3	259	tTg/tAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003475-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	146	224	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	416963	416963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001974-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			106	264	425	0	ENST00000399788.2:c.3587C>T	p.Ser1196Phe	p.S1196F	ENST00000399788	NM_001042603.1	1196	tCc/tTc					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26032210	26032210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	286	274	0	ENST00000244661.2:c.79C>T	p.Arg27Cys	p.R27C	ENST00000244661	NM_003537.3	27	Cgc/Tgc					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5044488	5044488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	313	396	0	ENST00000381652.3:c.436G>C	p.Asp146His	p.D146H	ENST00000381652	NM_004972.3	146	Gat/Cat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	778	334	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	185	260	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58677993	58677993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	205	155	0	ENST00000305921.3:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000305921	NM_003620.3	73	cGa/cAa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162552	47162552	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0003531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	212	227	0	ENST00000409792.3:c.3574del	p.Ala1192ProfsTer44	p.A1192Pfs*44	ENST00000409792	NM_014159.6	1192	Gcc/cc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	219	224	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	225	169	0	ENST00000269305.4:c.518T>C	p.Val173Ala	p.V173A	ENST00000269305	NM_001126112.2	173	gTg/gCg					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061227	38061227	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	396	243	0	ENST00000250448.2:c.762C>G	p.Phe254Leu	p.F254L	ENST00000250448	NM_004496.3	254	ttC/ttG					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0002547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			596	307	514	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0002547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			403	293	338	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0002547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			467	141	305	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga					NEWRECORD																																																																									
MYD88	0	MSKCC	GRCh37	3	38180207	38180207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			609	138	431	0	ENST00000396334.3:c.55C>T	p.Pro19Ser	p.P19S	ENST00000396334	NM_002468.4	19	Ccc/Tcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			998	84	527	1	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40747079	40747079	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002547-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1535	144	459	0	ENST00000373198.4:c.3003C>G	p.Ser1001Arg	p.S1001R	ENST00000373198	NM_133170.3	1001	agC/agG					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180046342	180046342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			140	37	381	0	ENST00000261937.6:c.2672G>A	p.Arg891His	p.R891H	ENST00000261937	NM_182925.4	891	cGc/cAc					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104377046	104377046	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0002746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			117	57	491	0	ENST00000369902.3:c.1158-1G>A		p.X386_splice	ENST00000369902	NM_016169.3	386						NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115117453	115117453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			134	31	386	0	ENST00000257566.3:c.721A>G	p.Ile241Val	p.I241V	ENST00000257566	NM_016569.3	241	Ata/Gta					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88420315	88420315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	12	484	0	ENST00000360948.2:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000360948	NM_001012338.2	791	Cgg/Tgg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187531024	187531025	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0002746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	86	669	0	ENST00000441802.2:c.9998_9999delCT	p.Pro3333ArgfsTer13	p.P3333Rfs*13	ENST00000441802	NM_005245.3	3333	cCT/c					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578365	7578383	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTCACCATCGCTATCTGA	GCTCACCATCGCTATCTGA	-			P-0002746-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			169	63	423	0	ENST00000269305.4:c.547_559+6del		p.X183_splice	ENST00000269305	NM_001126112.2	183						NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	464400	464400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002808-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			616	51	595	0	ENST00000399788.2:c.794G>A	p.Arg265Lys	p.R265K	ENST00000399788	NM_001042603.1	265	aGa/aAa					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435648	110435648	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002808-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			210	46	172	0	ENST00000375856.3:c.2753A>C	p.Glu918Ala	p.E918A	ENST00000375856	NM_003749.2	918	gAg/gCg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			554	162	155	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	1032	583	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11181344	11181344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			770	418	408	0	ENST00000361445.4:c.6892G>C	p.Asp2298His	p.D2298H	ENST00000361445	NM_004958.3	2298	Gac/Cac					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248163	59248163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			43	29	23	0	ENST00000371222.2:c.580G>T	p.Gly194Cys	p.G194C	ENST00000371222	NM_002228.3	194	Ggc/Tgc					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	175958588	175958588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1035	436	385	0	ENST00000367669.3:c.1757G>C	p.Arg586Pro	p.R586P	ENST00000367669	NM_022457.5	586	cGt/cCt					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29456439	29456439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1034	336	756	0	ENST00000389048.3:c.2479G>T	p.Val827Leu	p.V827L	ENST00000389048	NM_004304.4	827	Gta/Tta					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47635588	47635588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			398	447	400	0	ENST00000233146.2:c.260C>G	p.Ser87Cys	p.S87C	ENST00000233146	NM_000251.2	87	tCt/tGt					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47637440	47637440	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	473	388	0	ENST00000233146.2:c.574A>T	p.Ile192Phe	p.I192F	ENST00000233146	NM_000251.2	192	Atc/Ttc					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48026875	48026875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			827	257	593	0	ENST00000234420.5:c.1753C>G	p.Leu585Val	p.L585V	ENST00000234420	NM_000179.2	585	Cta/Gta					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99193486	99193486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			578	832	548	0	ENST00000074304.5:c.2681G>T	p.Ser894Ile	p.S894I	ENST00000074304	NM_001134224.1	894	aGc/aTc					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190728705	190728705	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	631	334	0	ENST00000441310.2:c.2093A>T	p.Gln698Leu	p.Q698L	ENST00000441310	NM_000534.4	698	cAg/cTg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212615412	212615412	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			892	189	411	0	ENST00000342788.4:c.574T>A	p.Ser192Thr	p.S192T	ENST00000342788	NM_005235.2	192	Tcc/Acc					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215593707	215593707	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	118	237	0	ENST00000260947.4:c.2027A>T	p.Tyr676Phe	p.Y676F	ENST00000260947	NM_000465.2	676	tAc/tTc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162197	47162197	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			879	293	366	0	ENST00000409792.3:c.3929C>G	p.Ser1310Ter	p.S1310*	ENST00000409792	NM_014159.6	1310	tCa/tGa					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72428190	72428190	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			764	423	370	0	ENST00000477973.2:c.699+1G>T		p.X233_splice	ENST00000477973	NM_012234.5	233						NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138664847	138664847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			30	45	22	0	ENST00000330315.3:c.718G>A	p.Gly240Ser	p.G240S	ENST00000330315	NM_023067.3	240	Ggc/Agc					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185167804	185167804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1440	557	476	0	ENST00000265026.3:c.1127C>G	p.Ser376Cys	p.S376C	ENST00000265026	NM_004721.4	376	tCc/tGc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66201810	66201810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	222	375	0	ENST00000273854.3:c.2692C>T	p.Pro898Ser	p.P898S	ENST00000273854	NM_004439.5	898	Cca/Tca					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66201827	66201827	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			393	328	338	0	ENST00000273854.3:c.2675A>T	p.Glu892Val	p.E892V	ENST00000273854	NM_004439.5	892	gAg/gTg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467953	66467953	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	227	408	0	ENST00000273854.3:c.316G>T	p.Glu106Ter	p.E106*	ENST00000273854	NM_004439.5	106	Gaa/Taa					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143352410	143352410	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			487	536	453	0	ENST00000262992.4:c.3G>T	p.Met1?	p.M1?	ENST00000262992	NM_001101669.1	1	atG/atT					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876524	35876524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1449	379	268	0	ENST00000303115.3:c.1316C>A	p.Thr439Asn	p.T439N	ENST00000303115	NM_002185.3	439	aCt/aAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177106	112177106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			255	800	458	0	ENST00000257430.4:c.5815G>C	p.Asp1939His	p.D1939H	ENST00000257430	NM_000038.5	1939	Gac/Cac					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149512446	149512446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	571	367	0	ENST00000261799.4:c.994C>T	p.Arg332Trp	p.R332W	ENST00000261799	NM_002609.3	332	Cgg/Tgg					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176523702	176523702	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	747	595	0	ENST00000292408.4:c.2113G>T	p.Gly705Ter	p.G705*	ENST00000292408	NM_213647.1	705	Gga/Tga					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30671949	30671949	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			809	559	521	1	ENST00000376406.3:c.5011A>C	p.Thr1671Pro	p.T1671P	ENST00000376406	NM_014641.2	1671	Acc/Ccc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32170060	32170060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			777	540	532	0	ENST00000375023.3:c.3548G>T	p.Gly1183Val	p.G1183V	ENST00000375023	NM_004557.3	1183	gGa/gTa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117704623	117704623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			820	574	424	1	ENST00000368508.3:c.2353G>T	p.Val785Leu	p.V785L	ENST00000368508	NM_002944.2	785	Gtg/Ttg					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137522064	137522064	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			864	214	268	0	ENST00000367739.4:c.815A>C	p.Lys272Thr	p.K272T	ENST00000367739	NM_000416.2	272	aAa/aCa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2983870	2983870	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1102	509	601	0	ENST00000396946.4:c.660G>C	p.Met220Ile	p.M220I	ENST00000396946	NM_032415.4	220	atG/atC					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13971366	13971366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			600	118	223	0	ENST00000405192.2:c.563G>C	p.Arg188Pro	p.R188P	ENST00000405192	NM_001163147.1	188	cGc/cCc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55233096	55233096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			583	302	247	0	ENST00000275493.2:c.1846G>T	p.Val616Leu	p.V616L	ENST00000275493	NM_005228.3	616	Gtg/Ttg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140534411	140534411	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			641	1116	320	1	ENST00000288602.6:c.502G>T	p.Val168Leu	p.V168L	ENST00000288602	NM_004333.4	168	Gtg/Ttg					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148507438	148507438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1912	228	415	0	ENST00000320356.2:c.2016C>G	p.Phe672Leu	p.F672L	ENST00000320356	NM_004456.4	672	ttC/ttG					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151860506	151860506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1959	511	477	0	ENST00000262189.6:c.10156G>C	p.Asp3386His	p.D3386H	ENST00000262189	NM_170606.2	3386	Gat/Cat					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151871215	151871215	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1151	790	355	0	ENST00000262189.6:c.9374+1G>C		p.X3125_splice	ENST00000262189	NM_170606.2	3125						NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151932996	151932996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			491	46	74	0	ENST00000262189.6:c.2675G>A	p.Gly892Glu	p.G892E	ENST00000262189	NM_170606.2	892	gGa/gAa					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5054592	5054592	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			128	506	218	0	ENST00000381652.3:c.644G>T	p.Arg215Leu	p.R215L	ENST00000381652	NM_004972.3	215	cGa/cTa					NEWRECORD																																																																									
CD274	0	MSKCC	GRCh37	9	5463097	5463097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			144	527	202	0	ENST00000381577.3:c.658C>T	p.His220Tyr	p.H220Y	ENST00000381577	NM_014143.3	220	Cat/Tat					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341725	8341725	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			280	945	571	1	ENST00000356435.5:c.4915G>T	p.Glu1639Ter	p.E1639*	ENST00000356435		1639	Gag/Tag					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88635778	88635778	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			413	95	207	0	ENST00000372037.3:c.3G>T	p.Met1?	p.M1?	ENST00000372037	NM_004329.2	1	atG/atT					NEWRECORD																																																																									
SDHAF2	0	MSKCC	GRCh37	11	61197647	61197647	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1356	296	650	1	ENST00000301761.2:c.29C>T	p.Ser10Leu	p.S10L	ENST00000301761	NM_017841.2	10	tCg/tTg					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64136949	64136949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	187	162	0	ENST00000334205.4:c.1460G>T	p.Arg487Leu	p.R487L	ENST00000334205	NM_003942.2	487	cGg/cTg					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64137699	64137699	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			985	511	612	0	ENST00000334205.4:c.1800C>A	p.Tyr600Ter	p.Y600*	ENST00000334205	NM_003942.2	600	taC/taA					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67198974	67198974	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			922	178	317	0	ENST00000312629.5:c.445G>C	p.Glu149Gln	p.E149Q	ENST00000312629	NM_003952.2	149	Gag/Cag					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77054940	77054940	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1164	561	617	0	ENST00000356341.3:c.922A>G	p.Lys308Glu	p.K308E	ENST00000356341	NM_002576.4	308	Aag/Gag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108165748	108165748	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1214	251	401	0	ENST00000278616.4:c.4871A>T	p.His1624Leu	p.H1624L	ENST00000278616	NM_000051.3	1624	cAt/cTt					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119146835	119146835	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			878	428	420	0	ENST00000264033.4:c.998G>T	p.Arg333Met	p.R333M	ENST00000264033	NM_005188.3	333	aGg/aTg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18443917	18443917	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1305	242	476	0	ENST00000266497.5:c.890C>G	p.Ser297Ter	p.S297*	ENST00000266497		297	tCa/tGa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46205332	46205332	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			675	323	342	0	ENST00000334344.6:c.416C>T	p.Ser139Leu	p.S139L	ENST00000334344	NM_152641.2	139	tCg/tTg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49432551	49432551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			440	873	429	0	ENST00000301067.7:c.8588G>T	p.Gly2863Val	p.G2863V	ENST00000301067	NM_003482.3	2863	gGc/gTc					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58144442	58144442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	273	217	0	ENST00000257904.6:c.629G>C	p.Arg210Pro	p.R210P	ENST00000257904	NM_000075.3	210	cGa/cCa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133249764	133249764	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	193	343	2	ENST00000320574.5:c.1459A>G	p.Met487Val	p.M487V	ENST00000320574	NM_006231.2	487	Atg/Gtg					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562717	21562717	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			81	109	62	0	ENST00000382592.4:c.1202C>A	p.Pro401Gln	p.P401Q	ENST00000382592	NM_014572.2	401	cCa/cAa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955473	48955473	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1173	240	417	2	ENST00000267163.4:c.1589A>T	p.Lys530Ile	p.K530I	ENST00000267163	NM_000321.2	530	aAa/aTa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49033875	49033875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1206	468	487	0	ENST00000267163.4:c.2012C>T	p.Ser671Phe	p.S671F	ENST00000267163	NM_000321.2	671	tCt/tTt					NEWRECORD																																																																									
RAD51B	0	MSKCC	GRCh37	14	68301819	68301819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			608	452	471	0	ENST00000487270.1:c.221G>T	p.Arg74Met	p.R74M	ENST00000487270	NM_133509.3	74	aGg/aTg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88483985	88483985	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	199	326	1	ENST00000360948.2:c.1586-1G>C		p.X529_splice	ENST00000360948	NM_001012338.2	529						NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91292656	91292656	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			520	426	323	0	ENST00000355112.3:c.158C>G	p.Ser53Ter	p.S53*	ENST00000355112	NM_000057.2	53	tCa/tGa					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91328153	91328153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			632	238	355	0	ENST00000355112.3:c.2665G>T	p.Asp889Tyr	p.D889Y	ENST00000355112	NM_000057.2	889	Gat/Tat					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99478253	99478253	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	120	153	0	ENST00000268035.6:c.3157G>T	p.Val1053Leu	p.V1053L	ENST00000268035	NM_000875.3	1053	Gtg/Ttg					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	341293	341293	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			738	459	533	0	ENST00000262320.3:c.2191G>T	p.Val731Leu	p.V731L	ENST00000262320	NM_003502.3	731	Gtg/Ttg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89849470	89849470	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			753	472	567	0	ENST00000389301.3:c.1511G>T	p.Arg504Leu	p.R504L	ENST00000389301	NM_000135.2	504	cGc/cTc					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37866091	37866091	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			901	479	423	0	ENST00000269571.5:c.600G>T	p.Lys200Asn	p.K200N	ENST00000269571		200	aaG/aaT					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41203127	41203127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	307	234	0	ENST00000357654.3:c.5285G>T	p.Arg1762Met	p.R1762M	ENST00000357654	NM_007294.3	1762	aGg/aTg					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56772460	56772460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1342	253	453	0	ENST00000337432.4:c.314C>T	p.Ser105Leu	p.S105L	ENST00000337432	NM_058216.2	105	tCa/tTa					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117632	70117632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1038	566	543	0	ENST00000245479.2:c.100C>A	p.Pro34Thr	p.P34T	ENST00000245479	NM_000346.3	34	Ccc/Acc					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117797	70117797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			996	529	570	0	ENST00000245479.2:c.265G>T	p.Val89Leu	p.V89L	ENST00000245479	NM_000346.3	89	Gtg/Ttg					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	724581	724581	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			689	130	267	0	ENST00000314574.4:c.1475C>A	p.Pro492Gln	p.P492Q	ENST00000314574	NM_005433.3	492	cCg/cAg					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15349876	15349876	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			211	261	179	0	ENST00000263377.2:c.3776G>C	p.Arg1259Pro	p.R1259P	ENST00000263377	NM_058243.2	1259	cGc/cCc					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18266954	18266954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	37	55	0	ENST00000222254.8:c.265C>A	p.Arg89Ser	p.R89S	ENST00000222254	NM_005027.3	89	Cgc/Agc					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18279639	18279639	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			599	199	345	0	ENST00000222254.8:c.1912G>T	p.Gly638Cys	p.G638C	ENST00000222254	NM_005027.3	638	Ggc/Tgc					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30314572	30314572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1084	453	583	3	ENST00000262643.3:c.1121G>T	p.Arg374Leu	p.R374L	ENST00000262643	NM_001238.2	374	cGa/cTa					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42791519	42791519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1716	260	658	0	ENST00000575354.2:c.500G>A	p.Gly167Glu	p.G167E	ENST00000575354	NM_015125.3	167	gGa/gAa					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42793127	42793127	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1351	265	465	0	ENST00000575354.2:c.1019G>T	p.Arg340Leu	p.R340L	ENST00000575354	NM_015125.3	340	cGg/cTg					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42793543	42793543	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			722	344	317	0	ENST00000575354.2:c.1345G>C	p.Asp449His	p.D449H	ENST00000575354	NM_015125.3	449	Gat/Cat					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715961	52715961	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			955	395	502	0	ENST00000322088.6:c.526G>C	p.Asp176His	p.D176H	ENST00000322088	NM_014225.5	176	Gat/Cat					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023121	31023121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1434	198	399	0	ENST00000375687.4:c.2606G>T	p.Gly869Val	p.G869V	ENST00000375687	NM_015338.5	869	gGt/gTt					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31376681	31376681	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			904	366	402	0	ENST00000328111.2:c.676G>T	p.Gly226Trp	p.G226W	ENST00000328111	NM_006892.3	226	Ggg/Tgg					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39744994	39744994	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1493	188	482	0	ENST00000361337.2:c.1784C>A	p.Ser595Tyr	p.S595Y	ENST00000361337	NM_003286.2	595	tCc/tAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40714438	40714438	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			941	144	340	0	ENST00000373198.4:c.3959T>A	p.Val1320Glu	p.V1320E	ENST00000373198	NM_133170.3	1320	gTg/gAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40748580	40748580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1102	168	331	0	ENST00000373198.4:c.2936C>A	p.Thr979Asn	p.T979N	ENST00000373198	NM_133170.3	979	aCt/aAt					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54961363	54961363	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			694	105	186	0	ENST00000312783.6:c.269G>T	p.Arg90Met	p.R90M	ENST00000312783	NM_198436.1	90	aGg/aTg					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29095918	29095918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			862	239	560	0	ENST00000328354.6:c.916G>A	p.Gly306Arg	p.G306R	ENST00000328354	NM_007194.3	306	Ggg/Agg					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53225199	53225199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			165	569	404	0	ENST00000375401.3:c.3019C>T	p.Arg1007Cys	p.R1007C	ENST00000375401	NM_004187.3	1007	Cgt/Tgt					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81335655	81335655	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1112	565	449	0	ENST00000222390.5:c.1705del	p.Gln569SerfsTer13	p.Q569Sfs*13	ENST00000222390	NM_000601.4	569	Cag/ag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858680	9858681	+	missense_variant	Missense_Mutation	DNP	CA	CA	AT			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	881	531	0	ENST00000330684.3:c.2720_2721delinsAT	p.Met907Asn	p.M907N	ENST00000330684	NM_001134407.1	907	aTG/aAT					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2161482	2161483	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			846	291	691	0	ENST00000434045.2:c.44_45delinsAG	p.Thr15Lys	p.T15K	ENST00000434045	NM_001127598.1	15	aCC/aAG					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44942724	44942726	+	missense_variant	Missense_Mutation	ONP	GAG	GAG	AAT			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			141	483	225	0	ENST00000377967.4:c.3304_3306delinsAAT	p.Glu1102Asn	p.E1102N	ENST00000377967	NM_021140.2	1102	GAG/AAT					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391977	139391978	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0001171-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			539	504	643	0	ENST00000277541.6:c.6213_6214delinsTT	p.Glu2071_Gly2072delinsAspCys	p.E2071_G2072delinsDC	ENST00000277541	NM_017617.3	2071	gaGGgc/gaTTgc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			227	157	244	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0002827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			184	72	251	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766276	66766276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	43	264	1	ENST00000374690.3:c.1288G>A	p.Ala430Thr	p.A430T	ENST00000374690	NM_000044.3	430	Gcc/Acc					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30681655	30681655	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			490	83	467	0	ENST00000376406.3:c.442G>A	p.Glu148Lys	p.E148K	ENST00000376406	NM_014641.2	148	Gaa/Aaa					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6441588	6441588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002827-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	17	57	0	ENST00000356142.4:c.435C>G	p.Ile145Met	p.I145M	ENST00000356142	NM_018890.3	145	atC/atG					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0002419-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			665	188	392	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002419-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			377	171	427	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593554	48593554	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002419-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	114	271	1	ENST00000342988.3:c.1307del	p.Lys436ArgfsTer40	p.K436Rfs*40	ENST00000342988	NM_005359.5	435	atA/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	52	209	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag					NEWRECORD																																																																									
CDKN2C	0	MSKCC	GRCh37	1	51439694	51439694	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			435	50	177	0	ENST00000262662.1:c.259C>T	p.Gln87Ter	p.Q87*	ENST00000262662		87	Cag/Tag					NEWRECORD																																																																									
VTCN1	0	MSKCC	GRCh37	1	117699325	117699325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			631	35	215	0	ENST00000369458.3:c.316G>T	p.Asp106Tyr	p.D106Y	ENST00000369458	NM_024626.3	106	Gat/Tat					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43607552	43607552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	16	108	0	ENST00000355710.3:c.1528G>T	p.Ala510Ser	p.A510S	ENST00000355710	NM_020975.4	510	Gcc/Tcc					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94203753	94203753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	27	209	0	ENST00000323929.3:c.901C>T	p.Leu301Phe	p.L301F	ENST00000323929	NM_005591.3	301	Ctt/Ttt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602290	10602290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			392	21	166	0	ENST00000171111.5:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000171111	NM_203500.1	430	Ggc/Tgc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39923724	39923724	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	33	91	0	ENST00000378444.4:c.3367G>T	p.Asp1123Tyr	p.D1123Y	ENST00000378444	NM_001123385.1	1123	Gac/Tac					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47040650	47040650	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	31	86	0	ENST00000329236.7:c.1051G>T	p.Glu351Ter	p.E351*	ENST00000329236	NM_001204466.1	351	Gag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112170822	112170822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002438-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			564	306	509	0	ENST00000257430.4:c.1918C>T	p.Arg640Trp	p.R640W	ENST00000257430	NM_000038.5	640	Cgg/Tgg					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149447875	149447875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002438-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			744	143	385	1	ENST00000286301.3:c.1529C>T	p.Pro510Leu	p.P510L	ENST00000286301	NM_005211.3	510	cCg/cTg					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	149983044	149983044	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0002438-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			833	168	597	1	ENST00000253339.5:c.3214G>T	p.Glu1072Ter	p.E1072*	ENST00000253339		1072	Gaa/Taa					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118348715	118348715	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002438-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	155	410	0	ENST00000534358.1:c.3368A>T	p.Glu1123Val	p.E1123V	ENST00000534358	NM_005933.3	1123	gAa/gTa					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435350	110435350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002438-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			305	207	141	0	ENST00000375856.3:c.3051G>T	p.Leu1017Phe	p.L1017F	ENST00000375856	NM_003749.2	1017	ttG/ttT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002438-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	246	328	2	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	189	138	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	951	255	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45798461	45798461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	548	357	0	ENST00000372115.3:c.508C>T	p.Arg170Trp	p.R170W	ENST00000372115	NM_001048171.1	170	Cgg/Tgg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8465650	8465650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	205	276	0	ENST00000356435.5:c.3530G>T	p.Arg1177Leu	p.R1177L	ENST00000356435		1177	cGc/cTc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8486222	8486222	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	367	226	0	ENST00000356435.5:c.2595G>A	p.Met865Ile	p.M865I	ENST00000356435		865	atG/atA					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18576880	18576880	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1257	174	297	0	ENST00000266497.5:c.2288C>T	p.Ala763Val	p.A763V	ENST00000266497		763	gCt/gTt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993789	72993789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	155	286	0	ENST00000268489.5:c.256G>T	p.Ala86Ser	p.A86S	ENST00000268489	NM_006885.3	86	Gcc/Tcc					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1321324	1321324	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	183	210	0	ENST00000381566.1:c.431G>C	p.Gly144Ala	p.G144A	ENST00000381566		144	gGg/gCg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045025	47045025	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	266	294	0	ENST00000329236.7:c.2117A>T	p.His706Leu	p.H706L	ENST00000329236	NM_001204466.1	706	cAc/cTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0004067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	84	156	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56493665	56493665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001675-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			698	39	528	0	ENST00000267101.3:c.2981G>A	p.Gly994Asp	p.G994D	ENST00000267101	NM_001982.3	994	gGt/gAt					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17122502	17122502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001675-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			367	24	650	0	ENST00000285071.4:c.893G>A	p.Ser298Asn	p.S298N	ENST00000285071	NM_144997.5	298	aGc/aAc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575089	48575089	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001675-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	25	519	1	ENST00000342988.3:c.283T>C	p.Tyr95His	p.Y95H	ENST00000342988	NM_005359.5	95	Tat/Cat					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467698	66467698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000115-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			647	124	285	0	ENST00000273854.3:c.571C>T	p.Arg191Cys	p.R191C	ENST00000273854	NM_004439.5	191	Cgt/Tgt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8636817	8636817	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000115-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			876	63	247	0	ENST00000356435.5:c.92T>A	p.Val31Asp	p.V31D	ENST00000356435		31	gTt/gAt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49421038	49421038	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000115-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	53	135	0	ENST00000301067.7:c.14711G>T	p.Arg4904Leu	p.R4904L	ENST00000301067	NM_003482.3	4904	cGa/cTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000115-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			659	81	216	0	ENST00000269305.4:c.314G>A	p.Gly105Asp	p.G105D	ENST00000269305	NM_001126112.2	105	gGc/gAc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29528155	29528155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000115-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			926	50	337	0	ENST00000358273.4:c.1163C>G	p.Pro388Arg	p.P388R	ENST00000358273	NM_001042492.2	388	cCt/cGt					NEWRECORD																																																																									
SH2D1A	0	MSKCC	GRCh37	X	123505203	123505203	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0000115-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			565	113	267	0	ENST00000371139.4:c.349A>G	p.Ile117Val	p.I117V	ENST00000371139	NM_001114937.2	117	Ata/Gta					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002152-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			762	329	387	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43608399	43608399	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002152-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1075	198	372	0	ENST00000355710.3:c.1747C>T	p.Gln583Ter	p.Q583*	ENST00000355710	NM_020975.4	583	Cag/Tag					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38950061	38950061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000224-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			988	410	400	0	ENST00000357387.3:c.3889C>T	p.Pro1297Ser	p.P1297S	ENST00000357387	NM_152756.3	1297	Cct/Tct					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000224-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	205	344	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108099967	108099967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000224-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			304	189	191	0	ENST00000278616.4:c.248C>T	p.Ser83Leu	p.S83L	ENST00000278616	NM_000051.3	83	tCa/tTa					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243727126	243727126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1006	110	381	0	ENST00000263826.5:c.844G>A	p.Asp282Asn	p.D282N	ENST00000263826	NM_005465.4	282	Gat/Aat					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56170975	56170975	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	198	279	0	ENST00000399503.3:c.1803G>C	p.Glu601Asp	p.E601D	ENST00000399503	NM_005921.1	601	gaG/gaC					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176631163	176631163	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	394	428	0	ENST00000439151.2:c.1106T>C	p.Phe369Ser	p.F369S	ENST00000439151	NM_022455.4	369	tTt/tCt					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176631174	176631174	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			334	404	431	0	ENST00000439151.2:c.1117T>C	p.Ser373Pro	p.S373P	ENST00000439151	NM_022455.4	373	Tct/Cct					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151851505	151851505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			512	115	286	0	ENST00000262189.6:c.11986G>A	p.Asp3996Asn	p.D3996N	ENST00000262189	NM_170606.2	3996	Gat/Aat					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69233081	69233081	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			613	134	341	0	ENST00000462284.1:c.946G>A	p.Glu316Lys	p.E316K	ENST00000462284	NM_002392.5	316	Gaa/Aaa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593533	48593533	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002139-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	175	301	0	ENST00000342988.3:c.1284G>C	p.Lys428Asn	p.K428N	ENST00000342988	NM_005359.5	428	aaG/aaC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001470-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			100	54	411	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001470-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			50	39	321	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001470-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			60	12	161	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa					NEWRECORD																																																																									
TMEM127	0	MSKCC	GRCh37	2	96919643	96919643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001470-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	40	331	0	ENST00000258439.3:c.620C>T	p.Ala207Val	p.A207V	ENST00000258439	NM_001193304.2	207	gCg/gTg					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42796955	42796955	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149948572		P-0001470-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			194	44	381	0	ENST00000575354.2:c.3413C>T	p.Pro1138Leu	p.P1138L	ENST00000575354	NM_015125.3	1138	cCg/cTg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89693009	89693009	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0001955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			53	99	184	0	ENST00000371953.3:c.492+1G>C		p.X164_splice	ENST00000371953	NM_000314.4	164						NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729180	66729180	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001955-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			143	137	424	0	ENST00000307102.5:c.388T>C	p.Tyr130His	p.Y130H	ENST00000307102	NM_002755.3	130	Tat/Cat					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120484191	120484191	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001177-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			421	74	530	0	ENST00000256646.2:c.2939A>G	p.Asp980Gly	p.D980G	ENST00000256646	NM_024408.3	980	gAt/gGt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125455	47125455	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001177-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			545	48	840	0	ENST00000409792.3:c.5815del	p.Asp1939IlefsTer6	p.D1939Ifs*6	ENST00000409792	NM_014159.6	1939	Gat/at					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434618	49434618	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			445	260	312	0	ENST00000301067.7:c.6935C>G	p.Ser2312Ter	p.S2312*	ENST00000301067	NM_003482.3	2312	tCa/tGa					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206647673	206647673	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	441	172	0	ENST00000367120.3:c.88-1G>A		p.X30_splice	ENST00000367120	NM_014002.3	30						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47084189	47084189	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	184	202	0	ENST00000409792.3:c.7100C>T	p.Ser2367Phe	p.S2367F	ENST00000409792	NM_014159.6	2367	tCt/tTt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47147551	47147551	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	273	297	0	ENST00000409792.3:c.4775G>T	p.Arg1592Leu	p.R1592L	ENST00000409792	NM_014159.6	1592	cGa/cTa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187519141	187519141	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	278	302	0	ENST00000441802.2:c.12242T>A	p.Leu4081Ter	p.L4081*	ENST00000441802	NM_005245.3	4081	tTa/tAa					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38947395	38947395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1052	113	322	0	ENST00000357387.3:c.4285C>T	p.Leu1429Phe	p.L1429F	ENST00000357387	NM_152756.3	1429	Ctc/Ttc					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589138	67589138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	215	338	0	ENST00000274335.5:c.1126G>A	p.Gly376Arg	p.G376R	ENST00000274335		376	Gga/Aga					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30672030	30672030	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			691	225	552	0	ENST00000376406.3:c.4930A>G	p.Arg1644Gly	p.R1644G	ENST00000376406	NM_014641.2	1644	Agg/Ggg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2972213	2972213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			246	444	251	0	ENST00000396946.4:c.1526G>T	p.Arg509Ile	p.R509I	ENST00000396946	NM_032415.4	509	aGa/aTa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151860254	151860254	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	415	469	0	ENST00000262189.6:c.10408C>T	p.Gln3470Ter	p.Q3470*	ENST00000262189	NM_170606.2	3470	Cag/Tag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420213	49420213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			527	329	317	0	ENST00000301067.7:c.15536G>T	p.Arg5179Leu	p.R5179L	ENST00000301067	NM_003482.3	5179	cGt/cTt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49448398	49448398	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			697	422	470	0	ENST00000301067.7:c.313C>T	p.Pro105Ser	p.P105S	ENST00000301067	NM_003482.3	105	Ccc/Tcc					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	347933	347933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			943	261	992	0	ENST00000262320.3:c.1573G>C	p.Asp525His	p.D525H	ENST00000262320	NM_003502.3	525	Gac/Cac					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			108	260	175	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56448335	56448335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	274	238	0	ENST00000407977.2:c.312C>G	p.Ile104Met	p.I104M	ENST00000407977		104	atC/atG					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7152939	7152939	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			283	179	228	0	ENST00000302850.5:c.2030-1G>T		p.X677_splice	ENST00000302850	NM_000208.2	677						NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15302839	15302839	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			352	183	222	0	ENST00000263388.2:c.611C>T	p.Ser204Leu	p.S204L	ENST00000263388	NM_000435.2	204	tCa/tTa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	35	271	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41419957	41419957	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	64	473	0	ENST00000373198.4:c.364G>A	p.Val122Ile	p.V122I	ENST00000373198	NM_133170.3	122	Gtc/Atc					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215593448	215593449	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0004375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	130	420	0	ENST00000260947.4:c.2285_2286delinsTT	p.Trp762Phe	p.W762F	ENST00000260947	NM_000465.2	762	tGG/tTT					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0001367-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			86	58	221	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18273784	18273784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001367-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			205	74	357	4	ENST00000222254.8:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000222254	NM_005027.3	373	Ggg/Agg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68842698	68842698	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001367-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			268	176	459	0	ENST00000261769.5:c.635del	p.Gly212AspfsTer3	p.G212Dfs*3	ENST00000261769	NM_004360.3	212	Gga/ga					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0002528-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			405	50	388	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			470	75	412	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29498290	29498290	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			710	83	458	0	ENST00000389048.3:c.1890C>G	p.Ile630Met	p.I630M	ENST00000389048	NM_004304.4	630	atC/atG					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225365113	225365113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			686	105	416	0	ENST00000264414.4:c.1577C>T	p.Pro526Leu	p.P526L	ENST00000264414	NM_003590.4	526	cCa/cTa					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152265544	152265544	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			528	73	330	0	ENST00000206249.3:c.997C>A	p.Pro333Thr	p.P333T	ENST00000206249	NM_000125.3	333	Cct/Act					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508556	106508556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			423	129	211	0	ENST00000359195.3:c.550C>A	p.Arg184Ser	p.R184S	ENST00000359195	NM_002649.2	184	Cgc/Agc					NEWRECORD																																																																									
SH2D1A	0	MSKCC	GRCh37	X	123480514	123480514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			728	81	426	0	ENST00000371139.4:c.22C>G	p.His8Asp	p.H8D	ENST00000371139	NM_001114937.2	8	Cat/Gat					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206664151	206664151	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0002351-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			571	76	374	0	ENST00000367120.3:c.1695del		p.X565_splice	ENST00000367120	NM_014002.3	565						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			148	245	557	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			142	207	771	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175758	112175758	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001190-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			58	115	439	0	ENST00000257430.4:c.4467del	p.Leu1489PhefsTer18	p.L1489Ffs*18	ENST00000257430	NM_000038.5	1489	ttA/tt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			429	347	319	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138665107	138665107	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			159	16	223	0	ENST00000330315.3:c.458T>C	p.Phe153Ser	p.F153S	ENST00000330315	NM_023067.3	153	tTc/tCc					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38963103	38963103	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			774	96	485	0	ENST00000357387.3:c.1441G>A	p.Glu481Lys	p.E481K	ENST00000357387	NM_152756.3	481	Gaa/Aaa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50444347	50444347	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			474	38	224	0	ENST00000331340.3:c.277A>C	p.Asn93His	p.N93H	ENST00000331340	NM_006060.4	93	Aat/Cat					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139395204	139395204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			634	39	414	0	ENST00000277541.6:c.5734G>A	p.Asp1912Asn	p.D1912N	ENST00000277541	NM_017617.3	1912	Gac/Aac					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41223226	41223226	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			431	40	300	0	ENST00000357654.3:c.4705A>G	p.Ser1569Gly	p.S1569G	ENST00000357654	NM_007294.3	1569	Agc/Ggc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5214685	5214685	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			420	87	501	0	ENST00000357368.4:c.4381T>A	p.Tyr1461Asn	p.Y1461N	ENST00000357368	NM_002850.3	1461	Tac/Aac					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41765681	41765681	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			577	56	552	0	ENST00000301178.4:c.2557A>T	p.Ser853Cys	p.S853C	ENST00000301178	NM_021913.4	853	Agc/Tgc					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44514648	44514648	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			489	67	307	0	ENST00000291552.4:c.508A>T	p.Asn170Tyr	p.N170Y	ENST00000291552	NM_006758.2	170	Aac/Tac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0000495-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			299	122	382	0	ENST00000269305.4:c.949delC	p.Gln317SerfsTer28	p.Q317Sfs*28	ENST00000269305	NM_001126112.2	317	Cag/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577557	7577557	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000557-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	25	223	0	ENST00000269305.4:c.724T>G	p.Cys242Gly	p.C242G	ENST00000269305	NM_001126112.2	242	Tgc/Ggc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	184	211	0	ENST00000269305.4:c.538G>T	p.Glu180Ter	p.E180*	ENST00000269305	NM_001126112.2	180	Gag/Tag					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2217781	2217781	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	219	364	0	ENST00000398665.3:c.2555A>C	p.Glu852Ala	p.E852A	ENST00000398665	NM_032482.2	852	gAg/gCg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931463	66931464	+	missense_variant	Missense_Mutation	DNP	TC	TC	AT			P-0003450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1166	14169	210	3	ENST00000374690.3:c.2105_2106delinsAT	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTC/cAT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	34	463	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0003005-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			618	62	323	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003005-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			478	66	281	2	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003005-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			944	37	535	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579406	7579406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0003612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	72	240	0	ENST00000269305.4:c.281C>A	p.Ser94Ter	p.S94*	ENST00000269305	NM_001126112.2	94	tCa/tAa					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15302857	15302857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003612-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	94	308	0	ENST00000263388.2:c.593C>G	p.Ala198Gly	p.A198G	ENST00000263388	NM_000435.2	198	gCg/gGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			111	523	597	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106196463	106196463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			837	578	564	1	ENST00000380013.4:c.4796C>T	p.Ser1599Phe	p.S1599F	ENST00000380013	NM_001127208.2	1599	tCc/tTc					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372110	55372110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			146	122	116	0	ENST00000297316.4:c.800C>A	p.Ala267Asp	p.A267D	ENST00000297316	NM_022454.3	267	gCc/gAc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49037952	49037952	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0000339-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	331	359	0	ENST00000267163.4:c.2193delT	p.Pro732LeufsTer12	p.P732Lfs*12	ENST00000267163	NM_000321.2	731	cTt/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002712-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			936	20	746	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002712-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			972	79	711	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29095828	29095828	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0002712-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			917	69	790	0	ENST00000328354.6:c.1006C>T	p.Gln336Ter	p.Q336*	ENST00000328354	NM_007194.3	336	Cag/Tag					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89448564	89448564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	28	273	0	ENST00000336596.2:c.1528C>T	p.Arg510Ter	p.R510*	ENST00000336596	NM_005233.5	510	Cga/Tga					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993681	72993681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	71	352	0	ENST00000268489.5:c.364G>A	p.Glu122Lys	p.E122K	ENST00000268489	NM_006885.3	122	Gag/Aag					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41523525	41523525	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	87	233	1	ENST00000263253.7:c.941G>T	p.Gly314Val	p.G314V	ENST00000263253	NM_001429.3	314	gGc/gTc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	362	248	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	237	319	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118165602	118165602	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	138	226	0	ENST00000369448.3:c.112C>T	p.Arg38Ter	p.R38*	ENST00000369448	NM_017709.3	38	Cga/Tga					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713506	30713506	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	101	170	0	ENST00000359013.4:c.906G>C	p.Lys302Asn	p.K302N	ENST00000359013	NM_001024847.2	302	aaG/aaC					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59770823	59770823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	163	330	1	ENST00000259008.2:c.2543G>A	p.Arg848His	p.R848H	ENST00000259008	NM_032043.2	848	cGc/cAc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			176	58	149	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56161270	56161270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			499	90	415	0	ENST00000399503.3:c.1139T>C	p.Leu380Ser	p.L380S	ENST00000399503	NM_005921.1	380	tTa/tCa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484345	8484347	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0001395-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			723	92	524	0	ENST00000356435.5:c.3185_3187del	p.Glu1062del	p.E1062del	ENST00000356435		1062	gAAGtg/gtg					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38512309	38512309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001908-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			281	124	336	0	ENST00000254066.5:c.1220C>T	p.Pro407Leu	p.P407L	ENST00000254066	NM_000964.3	407	cCg/cTg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15296093	15296093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001908-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			207	70	448	0	ENST00000263388.2:c.2271C>G	p.His757Gln	p.H757Q	ENST00000263388	NM_000435.2	757	caC/caG					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713832	30713832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	21	136	0	ENST00000359013.4:c.1232T>C	p.Leu411Pro	p.L411P	ENST00000359013	NM_001024847.2	411	cTc/cCc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29527570	29527570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	44	267	0	ENST00000358273.4:c.1019C>T	p.Ser340Phe	p.S340F	ENST00000358273	NM_001042492.2	340	tCt/tTt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711965	89711965	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	151	161	0	ENST00000371953.3:c.585del	p.His196ThrfsTer3	p.H196Tfs*3	ENST00000371953	NM_000314.4	195	Ttt/tt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577543	7577543	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	117	177	0	ENST00000269305.4:c.738del	p.Met246IlefsTer99	p.M246Ifs*99	ENST00000269305	NM_001126112.2	246	atG/at					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108122673	108122680	+	frameshift_variant	Frame_Shift_Del	DEL	AAGGAATC	AAGGAATC	-			P-0004394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	162	176	0	ENST00000278616.4:c.1719_1726del	p.Lys573AsnfsTer13	p.K573Nfs*13	ENST00000278616	NM_000051.3	573	AAGGAATCa/a					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	524	247	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579369	7579369	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	146	196	0	ENST00000269305.4:c.318C>G	p.Ser106Arg	p.S106R	ENST00000269305	NM_001126112.2	106	agC/agG					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245033	46245033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	525	375	0	ENST00000334344.6:c.3127C>T	p.Gln1043Ter	p.Q1043*	ENST00000334344	NM_152641.2	1043	Caa/Taa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207019	1207054	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	ACCAGCCGCGCCGCAAGCGGGCCAAGCTCATCGGCA	ACCAGCCGCGCCGCAAGCGGGCCAAGCTCATCGGCA	-			P-0003276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	245	171	0	ENST00000326873.7:c.108_143del	p.Tyr36_Lys48delinsTer	p.Y36_K48delins*	ENST00000326873	NM_000455.4	36	tACCAGCCGCGCCGCAAGCGGGCCAAGCTCATCGGCAag/tag					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114925652	114925654	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0003276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	301	542	2	ENST00000543371.1:c.1734_1736del	p.Ser579del	p.S579del	ENST00000543371	NM_001198531.1	577	aCTTct/act					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10599867	10599868	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0003276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	325	386	0	ENST00000171111.5:c.1708_1708+1delinsTT		p.X570_splice	ENST00000171111	NM_203500.1	570						NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085942	16085942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	155	257	0	ENST00000281043.3:c.1118G>T	p.Arg373Leu	p.R373L	ENST00000281043	NM_005378.4	373	cGa/cTa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183787	10183787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	106	209	0	ENST00000256474.2:c.256C>T	p.Pro86Ser	p.P86S	ENST00000256474	NM_000551.3	86	Ccc/Tcc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442068	52442068	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	119	266	0	ENST00000460680.1:c.281A>G	p.His94Arg	p.H94R	ENST00000460680	NM_004656.3	94	cAt/cGt					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	431661	431661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	119	431	0	ENST00000399788.2:c.2348A>G	p.Lys783Arg	p.K783R	ENST00000399788	NM_001042603.1	783	aAa/aGa					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58145035	58145035	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0003039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	105	299	0	ENST00000257904.6:c.309T>A	p.Tyr103Ter	p.Y103*	ENST00000257904	NM_000075.3	103	taT/taA					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15290180	15290180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	102	292	0	ENST00000263388.2:c.3455C>T	p.Thr1152Met	p.T1152M	ENST00000263388	NM_000435.2	1152	aCg/aTg					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577392	64577392	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			225	188	477	2	ENST00000337652.1:c.190C>T	p.Gln64Ter	p.Q64*	ENST00000337652	NM_130803.2	64	Cag/Tag					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2105402	2105402	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0001993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			187	66	354	0	ENST00000219476.3:c.482-1G>A		p.X161_splice	ENST00000219476	NM_000548.3	161						NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33288980	33288980	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001993-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	230	313	0	ENST00000374542.5:c.572del	p.Leu191TrpfsTer38	p.L191Wfs*38	ENST00000374542	NM_001141970.1	191	tTg/tg					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143007346	143007346	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001124-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			69	108	510	1	ENST00000262992.4:c.2438T>A	p.Ile813Asn	p.I813N	ENST00000262992	NM_001101669.1	813	aTc/aAc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55220260	55220260	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0001124-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			140	99	658	0	ENST00000275493.2:c.650A>T	p.Gln217Leu	p.Q217L	ENST00000275493	NM_005228.3	217	cAg/cTg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484363	8484363	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001124-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			150	122	493	0	ENST00000356435.5:c.3169G>C	p.Gly1057Arg	p.G1057R	ENST00000356435		1057	Ggg/Cgg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48881462	48881462	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001124-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			39	203	328	0	ENST00000267163.4:c.184C>T	p.Gln62Ter	p.Q62*	ENST00000267163	NM_000321.2	62	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0001124-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			42	88	582	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000204-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			726	834	526	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65303726	65303726	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000204-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			1009	148	596	0	ENST00000342505.4:c.3029T>G	p.Leu1010Arg	p.L1010R	ENST00000342505	NM_002227.2	1010	cTt/cGt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49424092	49424092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000204-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			857	129	534	0	ENST00000301067.7:c.13970C>G	p.Ser4657Cys	p.S4657C	ENST00000301067	NM_003482.3	4657	tCt/tGt					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95562249	95562249	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000204-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			1014	149	645	0	ENST00000343455.3:c.5008G>C	p.Glu1670Gln	p.E1670Q	ENST00000343455	NM_177438.2	1670	Gaa/Caa					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95562693	95562693	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000204-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			988	149	583	0	ENST00000343455.3:c.4564G>C	p.Asp1522His	p.D1522H	ENST00000343455	NM_177438.2	1522	Gac/Cac					NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37880257	37880257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000204-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			809	99	476	0	ENST00000269571.5:c.2301C>G	p.Ile767Met	p.I767M	ENST00000269571		767	atC/atG					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0002566-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	177	277	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002566-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			150	39	312	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6029533	6029533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002566-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			357	46	520	0	ENST00000265849.7:c.1042G>A	p.Glu348Lys	p.E348K	ENST00000265849	NM_000535.5	348	Gaa/Aaa					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30050694	30050694	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000750-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			290	21	369	0	ENST00000338641.4:c.496G>T	p.Glu166Ter	p.E166*	ENST00000338641	NM_000268.3	166	Gag/Tag					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30057326	30057326	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0000750-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			164	32	248	0	ENST00000338641.4:c.808G>T	p.Glu270Ter	p.E270*	ENST00000338641	NM_000268.3	270	Gag/Tag					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437431	52437431	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0000750-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			68	30	148	0	ENST00000460680.1:c.1729+1del		p.X577_splice	ENST00000460680	NM_004656.3	577						NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267491	198267491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002466-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			302	125	346	0	ENST00000335508.6:c.1866G>C	p.Glu622Asp	p.E622D	ENST00000335508	NM_012433.2	622	gaG/gaC					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142176503	142176503	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002466-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			356	105	615	0	ENST00000350721.4:c.7598G>C	p.Arg2533Pro	p.R2533P	ENST00000350721	NM_001184.3	2533	cGa/cCa					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98231221	98231221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002466-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			196	96	287	0	ENST00000331920.6:c.2062C>T	p.Gln688Ter	p.Q688*	ENST00000331920	NM_000264.3	688	Cag/Tag					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0000352-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			546	199	465	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000352-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			641	91	512	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55259439	55259439	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0000352-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	170	453	0	ENST00000275493.2:c.2497T>G	p.Leu833Val	p.L833V	ENST00000275493	NM_005228.3	833	Ttg/Gtg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000352-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	105	649	1	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0000352-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	105	649	1	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69462768	69462768	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000912-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			287	107	701	2	ENST00000227507.2:c.581A>G	p.Lys194Arg	p.K194R	ENST00000227507	NM_053056.2	194	aAg/aGg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696425	47696425	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000912-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	151	921	0	ENST00000347630.2:c.398T>C	p.Phe133Ser	p.F133S	ENST00000347630	NM_001007230.1	133	tTc/tCc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0001043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			137	94	349	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916891	178916891	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			379	9	486	1	ENST00000263967.3:c.278G>T	p.Arg93Leu	p.R93L	ENST00000263967	NM_006218.2	93	cGg/cTg					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176638392	176638392	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			179	98	463	0	ENST00000439151.2:c.2992T>G	p.Leu998Val	p.L998V	ENST00000439151	NM_022455.4	998	Tta/Gta					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8106022	8106022	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			160	288	302	3	ENST00000346208.3:c.842A>G	p.His281Arg	p.H281R	ENST00000346208		281	cAc/cGc					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56168793	56168793	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			322	179	426	0	ENST00000399503.3:c.1649del	p.Pro550LeufsTer7	p.P550Lfs*7	ENST00000399503	NM_005921.1	549	atC/at					NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56170991	56170991	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0001043-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			208	113	190	0	ENST00000399503.3:c.1823del	p.Gly608AlafsTer48	p.G608Afs*48	ENST00000399503	NM_005921.1	607	Ggg/gg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	75	345	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128748869	128748869	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0003556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	217	548	0	ENST00000377970.2:c.30G>C	p.Gln10His	p.Q10H	ENST00000377970	NM_002467.4	10	caG/caC					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8499826	8499826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	96	334	0	ENST00000356435.5:c.2143C>A	p.Pro715Thr	p.P715T	ENST00000356435		715	Cct/Act					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			274	84	58	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131915621	131915621	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	93	143	0	ENST00000265335.6:c.619C>G	p.Gln207Glu	p.Q207E	ENST00000265335		207	Caa/Gaa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108203489	108203489	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0000433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			91	55	94	0	ENST00000278616.4:c.7789G>C	p.Asp2597His	p.D2597H	ENST00000278616	NM_000051.3	2597	Gat/Cat					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030426	49030426	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			295	160	218	0	ENST00000267163.4:c.1901C>G	p.Ser634Ter	p.S634*	ENST00000267163	NM_000321.2	634	tCa/tGa					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766450	66766450	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000433-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			35	44	121	0	ENST00000374690.3:c.1462C>T	p.Gln488Ter	p.Q488*	ENST00000374690	NM_000044.3	488	Cag/Tag					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25973068	25973068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			768	333	715	0	ENST00000435504.4:c.1357G>A	p.Val453Met	p.V453M	ENST00000435504		453	Gtg/Atg					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138453475	138453475	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0001323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1345	264	769	0	ENST00000289153.2:c.972+1G>T		p.X324_splice	ENST00000289153	NM_006219.2	324						NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185191200	185191200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			301	263	369	1	ENST00000265026.3:c.2081C>G	p.Ser694Trp	p.S694W	ENST00000265026	NM_004721.4	694	tCg/tGg					NEWRECORD																																																																									
FGF19	0	MSKCC	GRCh37	11	69518517	69518517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001323-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			485	118	412	0	ENST00000294312.3:c.128G>A	p.Arg43His	p.R43H	ENST00000294312	NM_005117.2	43	cGc/cAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			593	51	537	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			272	65	230	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26923215	26923215	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			596	53	479	0	ENST00000381527.3:c.211C>T	p.Arg71Ter	p.R71*	ENST00000381527	NM_001260.1	71	Cga/Tga					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16247461	16247461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			541	52	507	0	ENST00000375759.3:c.1732G>A	p.Gly578Ser	p.G578S	ENST00000375759	NM_015001.2	578	Ggt/Agt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105592	27105592	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			475	100	580	0	ENST00000324856.7:c.5203G>T	p.Glu1735Ter	p.E1735*	ENST00000324856	NM_006015.4	1735	Gag/Tag					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46726580	46726580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			485	48	511	0	ENST00000371975.4:c.659C>T	p.Ser220Phe	p.S220F	ENST00000371975	NM_003579.3	220	tCc/tTc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29445265	29445265	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			420	26	378	1	ENST00000389048.3:c.3460G>A	p.Glu1154Lys	p.E1154K	ENST00000389048	NM_004304.4	1154	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			315	72	255	0	ENST00000263967.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaT					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430422	181430422	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			470	34	515	0	ENST00000325404.1:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000325404	NM_003106.3	92	Gac/Tac					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1795709	1795709	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			149	13	135	0	ENST00000260795.2:c.48C>G	p.Ile16Met	p.I16M	ENST00000260795		16	atC/atG					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57750466	57750466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			506	80	536	0	ENST00000274289.3:c.2002G>A	p.Glu668Lys	p.E668K	ENST00000274289	NM_006622.3	668	Gaa/Aaa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175677	112175677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			489	45	419	0	ENST00000257430.4:c.4386G>C	p.Lys1462Asn	p.K1462N	ENST00000257430	NM_000038.5	1462	aaG/aaC					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675372	30675372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			447	45	463	0	ENST00000376406.3:c.2984C>T	p.Ser995Phe	p.S995F	ENST00000376406	NM_014641.2	995	tCc/tTc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169159	32169159	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			377	74	431	0	ENST00000375023.3:c.3874G>C	p.Glu1292Gln	p.E1292Q	ENST00000375023	NM_004557.3	1292	Gag/Cag					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32190561	32190561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			338	39	305	0	ENST00000375023.3:c.178G>C	p.Glu60Gln	p.E60Q	ENST00000375023	NM_004557.3	60	Gag/Cag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151833948	151833948	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			506	47	418	0	ENST00000262189.6:c.14705G>C	p.Gly4902Ala	p.G4902A	ENST00000262189	NM_170606.2	4902	gGa/gCa					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63852416	63852416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			446	41	442	0	ENST00000279873.7:c.3194G>A	p.Gly1065Glu	p.G1065E	ENST00000279873	NM_032199.2	1065	gGa/gAa					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64571969	64571969	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			438	103	579	0	ENST00000337652.1:c.1685A>T	p.Lys562Met	p.K562M	ENST00000337652	NM_130803.2	562	aAg/aTg					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061240	38061240	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			350	96	447	1	ENST00000250448.2:c.749C>A	p.Ser250Tyr	p.S250Y	ENST00000250448	NM_004496.3	250	tCc/tAc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3817908	3817908	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			463	58	498	0	ENST00000262367.5:c.3063G>A	p.Met1021Ile	p.M1021I	ENST00000262367	NM_004380.2	1021	atG/atA					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15935794	15935794	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			418	33	337	0	ENST00000268712.3:c.7139C>G	p.Ser2380Ter	p.S2380*	ENST00000268712	NM_006311.3	2380	tCa/tGa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16004826	16004826	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			570	50	528	0	ENST00000268712.3:c.2428G>C	p.Val810Leu	p.V810L	ENST00000268712	NM_006311.3	810	Gtt/Ctt					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4117491	4117491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			215	24	256	0	ENST00000262948.5:c.229G>A	p.Glu77Lys	p.E77K	ENST00000262948	NM_030662.3	77	Gag/Aag					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15291496	15291496	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			404	27	346	0	ENST00000263388.2:c.3138G>T	p.Gln1046His	p.Q1046H	ENST00000263388	NM_000435.2	1046	caG/caT					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31369162	31369162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			532	43	505	0	ENST00000328111.2:c.146G>A	p.Arg49Gln	p.R49Q	ENST00000328111	NM_006892.3	49	cGa/cAa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68849497	68849497	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			393	121	537	0	ENST00000261769.5:c.1401del	p.Thr468ProfsTer13	p.T468Pfs*13	ENST00000261769	NM_004360.3	467	aCc/ac					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61713073	61713075	+	frameshift_variant	Frame_Shift_Del	DEL	GAG	GAG	AA			P-0001902-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			488	30	452	0	ENST00000401558.2:c.2336_2338delinsTT	p.Pro779LeufsTer28	p.P779Lfs*28	ENST00000401558	NM_003400.3	779	cCTCtg/cTTtg					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71096192	71096192	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	78	356	0	ENST00000318789.4:c.565C>T	p.Gln189Ter	p.Q189*	ENST00000318789	NM_032682.5	189	Cag/Tag					NEWRECORD																																																																									
HIST1H3C	0	MSKCC	GRCh37	6	26045804	26045804	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	95	1014	0	ENST00000540144.1:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000540144	NM_003531.2	56	Cag/Tag					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	26	549	0	ENST00000347630.2:c.392G>T	p.Trp131Leu	p.W131L	ENST00000347630	NM_001007230.1	131	tGg/tTg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	273	232	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	456	404	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16258254	16258254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	197	427	0	ENST00000375759.3:c.5519T>C	p.Val1840Ala	p.V1840A	ENST00000375759	NM_015001.2	1840	gTc/gCc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023905	27023905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	47	62	0	ENST00000324856.7:c.1011G>A	p.Trp337Ter	p.W337*	ENST00000324856	NM_006015.4	337	tgG/tgA					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023169	27023212	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAAC	GCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAAC	-			P-0004521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	32	60	0	ENST00000324856.7:c.283_326del	p.Gly95Ter	p.G95*	ENST00000324856	NM_006015.4	92	gGCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAAC/g					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0004123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	241	298	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	221	481	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921555	178921555	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	63	231	0	ENST00000263967.3:c.1037T>A	p.Val346Glu	p.V346E	ENST00000263967	NM_006218.2	346	gTa/gAa					NEWRECORD																																																																									
VEGFA	0	MSKCC	GRCh37	6	43749764	43749764	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	73	526	0	ENST00000523873.1:c.617G>C	p.Cys206Ser	p.C206S	ENST00000523873		206	tGc/tCc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266099	41266119	+	inframe_deletion	In_Frame_Del	DEL	CTCTGGAATCCATTCTGGTGC	CTCTGGAATCCATTCTGGTGC	-			P-0004123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	82	332	0	ENST00000349496.5:c.97_117del	p.Ser33_Ala39del	p.S33_A39del	ENST00000349496	NM_001904.3	32	gaCTCTGGAATCCATTCTGGTGCc/gac					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90958519	90958519	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004621-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	49	352	0	ENST00000265433.3:c.1919A>G	p.Asn640Ser	p.N640S	ENST00000265433	NM_002485.4	640	aAt/aGt					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87342756	87342756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	246	147	0	ENST00000277120.3:c.1041G>C	p.Gln347His	p.Q347H	ENST00000277120		347	caG/caC					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000931-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			827	113	414	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	125	687	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	89	488	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158622630	158622630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	135	1020	2	ENST00000263640.3:c.869C>T	p.Ser290Leu	p.S290L	ENST00000263640	NM_001105.4	290	tCg/tTg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173531	112173531	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	109	539	0	ENST00000257430.4:c.2240C>A	p.Ser747Ter	p.S747*	ENST00000257430	NM_000038.5	747	tCa/tAa					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31374389	31374389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	158	633	0	ENST00000328111.2:c.388C>T	p.Arg130Cys	p.R130C	ENST00000328111	NM_006892.3	130	Cgc/Tgc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40770587	40770587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	54	567	0	ENST00000373198.4:c.2795G>A	p.Arg932His	p.R932H	ENST00000373198	NM_133170.3	932	cGc/cAc					NEWRECORD																																																																									
AR	367	MSKCC	GRCh37	X	66766199	66766199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	65	339	0	ENST00000374690.3:c.1211C>T	p.Ala404Val	p.A404V	ENST00000374690	NM_000044.3	404	gCg/gTg					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58734156	58734156	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1515	179	967	0	ENST00000305921.3:c.1216del	p.Thr406ProfsTer3	p.T406Pfs*3	ENST00000305921	NM_003620.3	405	gAa/ga					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022643	31022643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1250	201	650	0	ENST00000375687.4:c.2129del	p.Gly710GlufsTer15	p.G710Efs*15	ENST00000375687	NM_015338.5	710	Gga/ga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175903	112175903	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	98	453	0	ENST00000257430.4:c.4612del	p.Glu1538AsnfsTer27	p.E1538Nfs*27	ENST00000257430	NM_000038.5	1538	Gaa/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	50	191	0	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36206818	36206831	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCTGCTCCAGT	GCAGCTGCTCCAGT	-			P-0004160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	16	147	0	ENST00000300305.3:c.681_694del	p.Leu228AlafsTer28	p.L228Afs*28	ENST00000300305		227	gaACTGGAGCAGCTGCgg/gagg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000647-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			718	161	890	0	ENST00000269305.4:c.646G>C	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ctg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001158-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			215	15	211	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518267	8518267	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001158-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			270	15	315	0	ENST00000356435.5:c.1124C>A	p.Thr375Asn	p.T375N	ENST00000356435		375	aCc/aAc					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781059	135781059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001158-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	20	504	0	ENST00000298552.3:c.1906G>A	p.Glu636Lys	p.E636K	ENST00000298552	NM_001162426.1	636	Gag/Aag					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56478786	56478786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001158-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			271	42	314	0	ENST00000267101.3:c.242G>A	p.Arg81Gln	p.R81Q	ENST00000267101	NM_001982.3	81	cGa/cAa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604697	48604697	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001158-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			245	17	268	0	ENST00000342988.3:c.1519A>G	p.Lys507Glu	p.K507E	ENST00000342988	NM_005359.5	507	Aaa/Gaa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8525035	8525035	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	92	341	1	ENST00000356435.5:c.569G>A	p.Gly190Glu	p.G190E	ENST00000356435		190	gGa/gAa					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31021194	31021194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001329-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			198	17	220	0	ENST00000375687.4:c.1193G>A	p.Gly398Asp	p.G398D	ENST00000375687	NM_015338.5	398	gGt/gAt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123195686	123195686	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001329-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			89	16	332	0	ENST00000218089.9:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000218089	NM_001042749.1	534	Gaa/Aaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	196	667	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162724593	162724593	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	92	528	0	ENST00000367921.3:c.365A>G	p.Tyr122Cys	p.Y122C	ENST00000367921	NM_006182.2	122	tAc/tGc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55955632	55955632	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			265	77	831	0	ENST00000263923.4:c.3313C>A	p.Pro1105Thr	p.P1105T	ENST00000263923	NM_002253.2	1105	Cca/Aca					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32185820	32185820	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201418371		P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			372	36	531	0	ENST00000375023.3:c.1576G>A	p.Ala526Thr	p.A526T	ENST00000375023	NM_004557.3	526	Gcg/Acg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8504401	8504401	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			291	23	420	0	ENST00000356435.5:c.1682G>A	p.Arg561Gln	p.R561Q	ENST00000356435		561	cGa/cAa					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625330	69625330	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143483033		P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			276	159	844	0	ENST00000334134.2:c.463G>A	p.Val155Met	p.V155M	ENST00000334134	NM_005247.2	155	Gtg/Atg					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42794023	42794023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000349-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	58	620	0	ENST00000575354.2:c.1384G>A	p.Asp462Asn	p.D462N	ENST00000575354	NM_015125.3	462	Gac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs68130327		P-0000396-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			119	166	284	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9775676	9775676	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000396-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			33	234	365	0	ENST00000377346.4:c.219C>G	p.Ile73Met	p.I73M	ENST00000377346	NM_005026.3	73	atC/atG					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142274901	142274901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000396-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			626	350	398	0	ENST00000350721.4:c.2159G>A	p.Gly720Asp	p.G720D	ENST00000350721	NM_001184.3	720	gGc/gAc					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185191274	185191274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000396-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			820	68	220	0	ENST00000265026.3:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000265026	NM_004721.4	719	Ggt/Tgt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152129157	152129157	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000396-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			811	247	749	0	ENST00000206249.3:c.110G>T	p.Arg37Leu	p.R37L	ENST00000206249	NM_000125.3	37	cGg/cTg					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69466022	69466022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000396-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			124	197	274	0	ENST00000227507.2:c.860C>T	p.Pro287Leu	p.P287L	ENST00000227507	NM_053056.2	287	cCc/cTc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88423612	88423612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000396-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			790	118	382	0	ENST00000360948.2:c.2223C>A	p.Ser741Arg	p.S741R	ENST00000360948	NM_001012338.2	741	agC/agA					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3781351	3781351	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000396-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			228	312	290	0	ENST00000262367.5:c.5014A>T	p.Arg1672Ter	p.R1672*	ENST00000262367	NM_004380.2	1672	Aga/Tga					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15978914	15978914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0000396-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			282	390	518	0	ENST00000268712.3:c.3604G>C	p.Glu1202Gln	p.E1202Q	ENST00000268712	NM_006311.3	1202	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	69	365	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	63	526	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114920437	114920437	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	148	678	0	ENST00000543371.1:c.1378T>C	p.Cys460Arg	p.C460R	ENST00000543371	NM_001198531.1	460	Tgc/Cgc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5211650	5211650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	97	429	0	ENST00000357368.4:c.5185G>A	p.Gly1729Ser	p.G1729S	ENST00000357368	NM_002850.3	1729	Ggt/Agt					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41558757	41558757	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	111	580	0	ENST00000263253.7:c.3702A>T	p.Arg1234Ser	p.R1234S	ENST00000263253	NM_001429.3	1234	agA/agT					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248632	59248632	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	108	472	0	ENST00000371222.2:c.111del	p.Ser37ArgfsTer2	p.S37Rfs*2	ENST00000371222	NM_002228.3	37	agC/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			79	610	341	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212566825	212566825	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	129	316	0	ENST00000342788.4:c.1356A>C	p.Glu452Asp	p.E452D	ENST00000342788	NM_005235.2	452	gaA/gaC					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15383765	15383765	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1201	326	348	0	ENST00000263377.2:c.146A>G	p.Glu49Gly	p.E49G	ENST00000263377	NM_058243.2	49	gAg/gGg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187524799	187524802	+	frameshift_variant	Frame_Shift_Del	DEL	GATG	GATG	-			P-0001989-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			500	286	318	0	ENST00000441802.2:c.10878_10881del	p.Asp3626GlufsTer13	p.D3626Efs*13	ENST00000441802	NM_005245.3	3626	gaCATC/ga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0000538-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			102	90	448	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68846071	68846071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000538-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			192	67	461	0	ENST00000261769.5:c.1042G>A	p.Ala348Thr	p.A348T	ENST00000261769	NM_004360.3	348	Gct/Act					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578410	7578410	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0000538-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			73	43	249	0	ENST00000269305.4:c.520A>T	p.Arg174Trp	p.R174W	ENST00000269305	NM_001126112.2	174	Agg/Tgg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178937410	178937410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	92	70	0	ENST00000263967.3:c.1798G>A	p.Glu600Lys	p.E600K	ENST00000263967	NM_006218.2	600	Gaa/Aaa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467986	66467986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	188	403	0	ENST00000273854.3:c.283C>T	p.Pro95Ser	p.P95S	ENST00000273854	NM_004439.5	95	Cct/Tct					NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36652025	36652025	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	374	410	0	ENST00000244741.5:c.147G>A	p.Trp49Ter	p.W49*	ENST00000244741	NM_000389.4	49	tgG/tgA					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117639399	117639399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	47	531	1	ENST00000368508.3:c.5957C>T	p.Ser1986Phe	p.S1986F	ENST00000368508	NM_002944.2	1986	tCc/tTc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			591	398	318	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			118	580	372	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178922324	178922324	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1064793732		P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			578	412	316	0	ENST00000263967.3:c.1093G>A	p.Glu365Lys	p.E365K	ENST00000263967	NM_006218.2	365	Gaa/Aaa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023692	27023692	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			84	340	173	0	ENST00000324856.7:c.798C>A	p.Phe266Leu	p.F266L	ENST00000324856	NM_006015.4	266	ttC/ttA					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46546348	46546348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	665	411	0	ENST00000262741.5:c.181C>T	p.Gln61Ter	p.Q61*	ENST00000262741	NM_003629.3	61	Cag/Tag					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65301842	65301842	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			131	413	257	0	ENST00000342505.4:c.3197C>G	p.Ser1066Cys	p.S1066C	ENST00000342505	NM_002227.2	1066	tCt/tGt					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65301898	65301898	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			93	269	168	0	ENST00000342505.4:c.3141G>A	p.Trp1047Ter	p.W1047*	ENST00000342505	NM_002227.2	1047	tgG/tgA					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65303735	65303735	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			182	462	321	0	ENST00000342505.4:c.3020G>C	p.Arg1007Thr	p.R1007T	ENST00000342505	NM_002227.2	1007	aGa/aCa					NEWRECORD																																																																									
RIT1	0	MSKCC	GRCh37	1	155880514	155880514	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1607	501	347	0	ENST00000368323.3:c.39C>G	p.Ser13Arg	p.S13R	ENST00000368323	NM_006912.5	13	agC/agG					NEWRECORD																																																																									
SDHC	0	MSKCC	GRCh37	1	161326547	161326547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			256	88	64	0	ENST00000367975.2:c.322C>G	p.Leu108Val	p.L108V	ENST00000367975	NM_003001.3	108	Ctg/Gtg					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128015190	128015190	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			579	377	367	0	ENST00000285398.2:c.2331C>G	p.Phe777Leu	p.F777L	ENST00000285398	NM_000122.1	777	ttC/ttG					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128015230	128015230	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs189511674		P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			525	400	365	0	ENST00000285398.2:c.2291C>T	p.Ser764Leu	p.S764L	ENST00000285398	NM_000122.1	764	tCg/tTg					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225371665	225371665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			823	629	397	0	ENST00000264414.4:c.939G>A	p.Met313Ile	p.M313I	ENST00000264414	NM_003590.4	313	atG/atA					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47142964	47142964	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			704	469	363	0	ENST00000409792.3:c.4999C>T	p.Gln1667Ter	p.Q1667*	ENST00000409792	NM_014159.6	1667	Cag/Tag					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185183575	185183575	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs185398541		P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			536	379	337	0	ENST00000265026.3:c.1429G>C	p.Glu477Gln	p.E477Q	ENST00000265026	NM_004721.4	477	Gag/Cag					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599284	55599284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145602440		P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			629	487	275	0	ENST00000288135.5:c.2410C>T	p.Arg804Trp	p.R804W	ENST00000288135	NM_000222.2	804	Cgg/Tgg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174068	112174068	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			592	446	283	0	ENST00000257430.4:c.2777C>G	p.Ser926Cys	p.S926C	ENST00000257430	NM_000038.5	926	tCt/tGt					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131925464	131925464	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			535	382	241	0	ENST00000265335.6:c.1387G>A	p.Glu463Lys	p.E463K	ENST00000265335		463	Gaa/Aaa					NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36652251	36652251	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	376	277	0	ENST00000244741.5:c.373G>C	p.Glu125Gln	p.E125Q	ENST00000244741	NM_000389.4	125	Gag/Cag					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50450326	50450326	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			462	360	332	0	ENST00000331340.3:c.510G>C	p.Glu170Asp	p.E170D	ENST00000331340	NM_006060.4	170	gaG/gaC					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55240762	55240762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			417	252	315	0	ENST00000275493.2:c.2006G>A	p.Arg669Gln	p.R669Q	ENST00000275493	NM_005228.3	669	cGa/cAa					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5089863	5089863	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	344	267	0	ENST00000381652.3:c.2761G>A	p.Gly921Ser	p.G921S	ENST00000381652	NM_004972.3	921	Ggt/Agt					NEWRECORD																																																																									
CD274	0	MSKCC	GRCh37	9	5462911	5462911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			612	434	338	0	ENST00000381577.3:c.472G>A	p.Glu158Lys	p.E158K	ENST00000381577	NM_014143.3	158	Gag/Aag					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133755898	133755898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	303	287	0	ENST00000318560.5:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000318560	NM_005157.4	509	Gag/Aag					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77047169	77047169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			6231	422	322	0	ENST00000356341.3:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000356341	NM_002576.4	459	Gaa/Aaa					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18691194	18691194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			635	443	321	0	ENST00000266497.5:c.3305C>G	p.Ala1102Gly	p.A1102G	ENST00000266497		1102	gCt/gGt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246664	46246664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	226	126	0	ENST00000334344.6:c.4758G>T	p.Gln1586His	p.Q1586H	ENST00000334344	NM_152641.2	1586	caG/caT					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21549383	21549383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			289	230	221	0	ENST00000382592.4:c.2893G>A	p.Asp965Asn	p.D965N	ENST00000382592	NM_014572.2	965	Gat/Aat					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28588626	28588626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			608	460	391	0	ENST00000241453.7:c.2822C>T	p.Ser941Leu	p.S941L	ENST00000241453	NM_004119.2	941	tCg/tTg					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91304464	91304464	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	370	249	0	ENST00000355112.3:c.1861G>C	p.Glu621Gln	p.E621Q	ENST00000355112	NM_000057.2	621	Gag/Cag					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3789661	3789661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1105	474	410	0	ENST00000262367.5:c.4198G>C	p.Glu1400Gln	p.E1400Q	ENST00000262367	NM_004380.2	1400	Gag/Cag					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14014026	14014026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			982	406	286	0	ENST00000311895.7:c.4G>A	p.Glu2Lys	p.E2K	ENST00000311895	NM_005236.2	2	Gag/Aag					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30321730	30321730	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			530	330	304	0	ENST00000322652.5:c.1585C>G	p.Leu529Val	p.L529V	ENST00000322652	NM_015355.2	529	Ctt/Gtt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1223126	1223126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			582	360	347	0	ENST00000326873.7:c.1063G>A	p.Asp355Asn	p.D355N	ENST00000326873	NM_000455.4	355	Gac/Aac					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17955183	17955183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			425	266	259	0	ENST00000458235.1:c.44C>T	p.Ser15Leu	p.S15L	ENST00000458235	NM_000215.3	15	tCa/tTa					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022877	31022877	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			573	432	285	0	ENST00000375687.4:c.2362G>A	p.Glu788Lys	p.E788K	ENST00000375687	NM_015338.5	788	Gaa/Aaa					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39726959	39726959	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			472	335	237	0	ENST00000361337.2:c.957G>C	p.Met319Ile	p.M319I	ENST00000361337	NM_003286.2	319	atG/atC					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24145531	24145531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			480	419	341	0	ENST00000263121.7:c.550G>A	p.Glu184Lys	p.E184K	ENST00000263121	NM_003073.3	184	Gag/Aag					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70357219	70357219	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002124-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			333	368	261	2	ENST00000374080.3:c.5734C>T	p.Arg1912Cys	p.R1912C	ENST00000374080		1912	Cgc/Tgc					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	100	283	0	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	51	181	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98231286	98231286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	55	179	0	ENST00000331920.6:c.1997C>T	p.Thr666Met	p.T666M	ENST00000331920	NM_000264.3	666	aCg/aTg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440879	52440882	+	frameshift_variant	Frame_Shift_Del	DEL	CCCG	CCCG	-			P-0004086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	128	289	0	ENST00000460680.1:c.622_625delCGGG	p.Arg208SerfsTer22	p.R208Sfs*22	ENST00000460680	NM_004656.3	208	CGGGtc/tc					NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056425	26056427	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs774779034		P-0004086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	46	170	0	ENST00000343677.2:c.230_232del	p.Asn77del	p.N77del	ENST00000343677	NM_005319.3	77	aACAgc/agc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55984963	55984963	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	69	364	0	ENST00000263923.4:c.166C>T	p.Gln56Ter	p.Q56*	ENST00000263923	NM_002253.2	56	Cag/Tag					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69222593	69222593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	65	337	0	ENST00000462284.1:c.566G>A	p.Arg189His	p.R189H	ENST00000462284	NM_002392.5	189	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	271	187	0	ENST00000269305.4:c.398T>C	p.Met133Thr	p.M133T	ENST00000269305	NM_001126112.2	133	aTg/aCg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173730	112173730	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	227	301	0	ENST00000257430.4:c.2442del	p.Phe814LeufsTer6	p.F814Lfs*6	ENST00000257430	NM_000038.5	813	aaT/aa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000694-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			345	71	192	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215610503	215610503	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000694-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			318	30	369	1	ENST00000260947.4:c.1753C>A	p.Leu585Ile	p.L585I	ENST00000260947	NM_000465.2	585	Ctc/Atc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108206579	108206579	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000694-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			259	26	199	0	ENST00000278616.4:c.8159A>G	p.Asp2720Gly	p.D2720G	ENST00000278616	NM_000051.3	2720	gAt/gGt					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142272804	142272804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	140	442	0	ENST00000350721.4:c.2395G>A	p.Glu799Lys	p.E799K	ENST00000350721	NM_001184.3	799	Gaa/Aaa					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189612154	189612154	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	77	401	0	ENST00000264731.3:c.1906G>T	p.Glu636Ter	p.E636*	ENST00000264731	NM_003722.4	636	Gag/Tag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56177754	56177754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	73	398	0	ENST00000399503.3:c.2727G>C	p.Glu909Asp	p.E909D	ENST00000399503	NM_005921.1	909	gaG/gaC					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176520447	176520447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	57	437	0	ENST00000292408.4:c.1292C>A	p.Ser431Tyr	p.S431Y	ENST00000292408	NM_213647.1	431	tCc/tAc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176722206	176722207	+	missense_variant	Missense_Mutation	DNP	GA	GA	AT			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	42	481	0	ENST00000439151.2:c.7837_7838delinsAT	p.Glu2613Ile	p.E2613I	ENST00000439151	NM_022455.4	2613	GAa/ATa					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553166	106553166	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	47	350	0	ENST00000369096.4:c.1131G>C	p.Leu377Phe	p.L377F	ENST00000369096	NM_001198.3	377	ttG/ttC					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137524774	137524774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	139	407	0	ENST00000367739.4:c.595C>A	p.Gln199Lys	p.Q199K	ENST00000367739	NM_000416.2	199	Cag/Aag					NEWRECORD																																																																									
CDK6	0	MSKCC	GRCh37	7	92404075	92404075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	77	458	1	ENST00000265734.4:c.304G>A	p.Asp102Asn	p.D102N	ENST00000265734	NM_001259.6	102	Gat/Aat					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89712017	89712017	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	53	147	0	ENST00000371953.3:c.634+1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212						NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103515177	103515177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	58	398	0	ENST00000355739.4:c.1678C>G	p.Leu560Val	p.L560V	ENST00000355739	NM_000123.3	560	Ctt/Gtt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	111	316	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15968268	15968268	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	31	539	0	ENST00000268712.3:c.5017C>A	p.Pro1673Thr	p.P1673T	ENST00000268712	NM_006311.3	1673	Cct/Act					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16001793	16001793	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	84	467	0	ENST00000268712.3:c.2708C>G	p.Ser903Ter	p.S903*	ENST00000268712	NM_006311.3	903	tCa/tGa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29509567	29509567	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	97	429	0	ENST00000358273.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000358273	NM_001042492.2	258	Gaa/Taa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47685245	47685245	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	141	499	0	ENST00000347630.2:c.705G>C	p.Glu235Asp	p.E235D	ENST00000347630	NM_001007230.1	235	gaG/gaC					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70342170	70342170	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004537-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	73	539	0	ENST00000374080.3:c.1222G>C	p.Glu408Gln	p.E408Q	ENST00000374080		408	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	282	347	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0004204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	120	182	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577555	7577555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	155	231	0	ENST00000269305.4:c.726C>G	p.Cys242Trp	p.C242W	ENST00000269305	NM_001126112.2	242	tgC/tgG					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81350098	81350098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	289	362	0	ENST00000222390.5:c.1234T>C	p.Cys412Arg	p.C412R	ENST00000222390	NM_000601.4	412	Tgt/Cgt					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134900	41134900	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	325	501	0	ENST00000379561.5:c.728G>T	p.Gly243Val	p.G243V	ENST00000379561	NM_002015.3	243	gGt/gTt					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95557638	95557638	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	227	346	0	ENST00000343455.3:c.5429A>T	p.Asp1810Val	p.D1810V	ENST00000343455	NM_177438.2	1810	gAt/gTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			248	140	229	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115120876	115120877	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0002229-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			558	205	290	0	ENST00000257566.3:c.129_130del	p.Leu44AspfsTer66	p.L44Dfs*66	ENST00000257566	NM_016569.3	43	gcGCtg/gctg					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0003802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	119	171	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	92	299	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27088729	27088729	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	72	291	0	ENST00000324856.7:c.2338C>T	p.Gln780Ter	p.Q780*	ENST00000324856	NM_006015.4	780	Cag/Tag					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412967	49412967	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	119	426	0	ENST00000418115.1:c.56C>G	p.Thr19Arg	p.T19R	ENST00000418115	NM_001664.2	19	aCa/aGa					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123279674	123279674	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	57	112	1	ENST00000358487.5:c.758C>G	p.Pro253Arg	p.P253R	ENST00000358487	NM_000141.4	253	cCt/cGt					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67654643	67654643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	133	345	0	ENST00000264010.4:c.1130G>A	p.Arg377His	p.R377H	ENST00000264010	NM_006565.3	377	cGt/cAt					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591108	67591125	+	inframe_deletion	In_Frame_Del	DEL	ACCAGACCTTATCCAGCT	ACCAGACCTTATCCAGCT	-			P-0003802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	45	216	0	ENST00000274335.5:c.1701_1718del	p.Pro568_Leu573del	p.P568_L573del	ENST00000274335		567	aaACCAGACCTTATCCAGCTg/aag					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	143	337	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			447	193	606	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154943	112154943	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			481	202	608	0	ENST00000257430.4:c.1214G>T	p.Arg405Leu	p.R405L	ENST00000257430	NM_000038.5	405	cGa/cTa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188866	32188866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			261	117	525	0	ENST00000375023.3:c.688C>A	p.Arg230Ser	p.R230S	ENST00000375023	NM_004557.3	230	Cgt/Agt					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128750529	128750529	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	197	665	0	ENST00000377970.2:c.66C>A	p.Phe22Leu	p.F22L	ENST00000377970	NM_002467.4	22	ttC/ttA					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29486070	29486070	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			450	154	546	0	ENST00000358273.4:c.247C>T	p.Gln83Ter	p.Q83*	ENST00000358273	NM_001042492.2	83	Cag/Tag					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120466537	120466538	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0001722-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			495	185	635	0	ENST00000256646.2:c.4581_4582del	p.Cys1527TrpfsTer10	p.C1527Wfs*10	ENST00000256646	NM_024408.3	1527	tgTGgt/tggt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828957	72828957	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	141	590	0	ENST00000268489.5:c.7624T>C	p.Phe2542Leu	p.F2542L	ENST00000268489	NM_006885.3	2542	Ttt/Ctt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002893-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			559	43	488	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0002893-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			484	26	405	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27097786	27097786	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002893-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			363	28	368	0	ENST00000324856.7:c.3375G>T	p.Lys1125Asn	p.K1125N	ENST00000324856	NM_006015.4	1125	aaG/aaT					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599344	55599344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002893-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	29	384	0	ENST00000288135.5:c.2470G>T	p.Val824Leu	p.V824L	ENST00000288135	NM_000222.2	824	Gtg/Ttg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10032255	10032255	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002893-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			262	21	320	0	ENST00000330684.3:c.568A>G	p.Thr190Ala	p.T190A	ENST00000330684	NM_001134407.1	190	Aca/Gca					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044453	47044453	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0002893-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			172	21	271	0	ENST00000329236.7:c.1717-1G>C		p.X573_splice	ENST00000329236	NM_001204466.1	573						NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53241030	53241031	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0000458-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			751	45	335	2	ENST00000375401.3:c.1180_1181delCT	p.Leu394AlafsTer11	p.L394Afs*11	ENST00000375401	NM_004187.3	394	CTg/g					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	592	623	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	527	395	0	ENST00000269305.4:c.993+1G>C		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120459157	120459157	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	229	375	0	ENST00000256646.2:c.6188A>G	p.Asp2063Gly	p.D2063G	ENST00000256646	NM_024408.3	2063	gAt/gGt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212488661	212488661	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	110	554	0	ENST00000342788.4:c.2188G>T	p.Gly730Ter	p.G730*	ENST00000342788	NM_005235.2	730	Gga/Tga					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153250870	153250870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	583	654	0	ENST00000281708.4:c.1190G>A	p.Gly397Asp	p.G397D	ENST00000281708	NM_033632.3	397	gGt/gAt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180039609	180039609	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	79	512	1	ENST00000261937.6:c.3434G>A	p.Arg1145His	p.R1145H	ENST00000261937	NM_182925.4	1145	cGc/cAc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70354300	70354300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	673	355	0	ENST00000374080.3:c.4711G>A	p.Asp1571Asn	p.D1571N	ENST00000374080		1571	Gac/Aac					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174099	112174099	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	375	522	0	ENST00000257430.4:c.2810del	p.Phe937SerfsTer18	p.F937Sfs*18	ENST00000257430	NM_000038.5	936	aaT/aa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41564815	41564817	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0003077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	282	534	0	ENST00000263253.7:c.4119_4121del	p.Phe1374del	p.F1374del	ENST00000263253	NM_001429.3	1372	tgCTTc/tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	62	280	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			94	26	203	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45394805	45394805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			89	66	265	0	ENST00000262160.6:c.544C>T	p.Arg182Ter	p.R182*	ENST00000262160	NM_005901.5	182	Cga/Tga					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			239	129	290	1	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			180	87	205	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99482445	99482445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			178	89	213	1	ENST00000268035.6:c.3313G>T	p.Ala1105Ser	p.A1105S	ENST00000268035	NM_000875.3	1105	Gca/Tca					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0002665-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	67	208	1	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	88	391	2	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	32	283	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645412	67645412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	109	491	0	ENST00000264010.4:c.677A>G	p.Tyr226Cys	p.Y226C	ENST00000264010	NM_006565.3	226	tAc/tGc					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67654639	67654639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	33	542	0	ENST00000264010.4:c.1126G>A	p.Glu376Lys	p.E376K	ENST00000264010	NM_006565.3	376	Gag/Aag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56160626	56160700	+	inframe_deletion	In_Frame_Del	DEL	CCCTGAGGAAACAAACCGCCGTGTTAACAAAGTGATGCGGGCCAGACTGTACTTACTGCAGCAGATAGGGCCTAA	CCCTGAGGAAACAAACCGCCGTGTTAACAAAGTGATGCGGGCCAGACTGTACTTACTGCAGCAGATAGGGCCTAA	-			P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	71	431	0	ENST00000399503.3:c.901_975del	p.Pro301_Asn325del	p.P301_N325del	ENST00000399503	NM_005921.1	300	agCCCTGAGGAAACAAACCGCCGTGTTAACAAAGTGATGCGGGCCAGACTGTACTTACTGCAGCAGATAGGGCCTAAc/agc					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7217872	7217875	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	37	604	0	ENST00000380728.2:c.136_139delGAAG	p.Glu46AsnfsTer16	p.E46Nfs*16	ENST00000380728		46	GAAGaa/aa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56180581	56180584	+	frameshift_variant	Frame_Shift_Del	DEL	CCAA	CCAA	-			P-0007288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	71	527	0	ENST00000399503.3:c.3910_3913del	p.Pro1304ThrfsTer31	p.P1304Tfs*31	ENST00000399503	NM_005921.1	1304	CCAAac/ac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	63	401	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225371604	225371604	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	52	408	0	ENST00000264414.4:c.1000G>T	p.Glu334Ter	p.E334*	ENST00000264414	NM_003590.4	334	Gaa/Taa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442077	52442077	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	119	280	0	ENST00000460680.1:c.272G>T	p.Cys91Phe	p.C91F	ENST00000460680	NM_004656.3	91	tGt/tTt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183788	10183788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	73	296	0	ENST00000256474.2:c.257C>T	p.Pro86Leu	p.P86L	ENST00000256474	NM_000551.3	86	cCc/cTc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099791	157099804	+	frameshift_variant	Frame_Shift_Del	DEL	GCCCCGGCGGCCGC	GCCCCGGCGGCCGC	-			P-0005317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	197	278	0	ENST00000346085.5:c.730_743del	p.Pro244TrpfsTer5	p.P244Wfs*5	ENST00000346085	NM_020732.3	243	gGCCCCGGCGGCCGC/g					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16262483	16262483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	23	165	0	ENST00000375759.3:c.9748G>A	p.Val3250Ile	p.V3250I	ENST00000375759	NM_015001.2	3250	Gtc/Atc					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372289	55372289	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	26	270	0	ENST00000297316.4:c.979C>A	p.Pro327Thr	p.P327T	ENST00000297316	NM_022454.3	327	Ccc/Acc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717609	89717609	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	29	221	0	ENST00000371953.3:c.635-1G>A		p.X212_splice	ENST00000371953	NM_000314.4	212						NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49442443	49442443	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0006379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	109	483	0	ENST00000301067.7:c.4130A>T	p.Gln1377Leu	p.Q1377L	ENST00000301067	NM_003482.3	1377	cAg/cTg					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0005535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	665	409	1	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2609	734	977	3	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131951789	131951789	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	64	551	0	ENST00000265335.6:c.3131A>C	p.Glu1044Ala	p.E1044A	ENST00000265335		1044	gAa/gCa					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12871066	12871066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	470	342	0	ENST00000228872.4:c.293C>T	p.Ala98Val	p.A98V	ENST00000228872	NM_004064.3	98	gCc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579448	7579464	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGCTGCTGGTGCAGG	GGAGCTGCTGGTGCAGG	-			P-0005535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	256	543	0	ENST00000269305.4:c.223_239del	p.Pro75TyrfsTer68	p.P75Yfs*68	ENST00000269305	NM_001126112.2	75	CCTGCACCAGCAGCTCCt/t					NEWRECORD																																																																									
CDKN1B	1027	MSKCC	GRCh37	12	12871053	12871053	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	466	356	0	ENST00000228872.4:c.285del	p.Gly97ValfsTer22	p.G97Vfs*22	ENST00000228872	NM_004064.3	94	Ccc/cc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	135	575	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	26	387	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057874	27057874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	263	934	0	ENST00000324856.7:c.1582C>T	p.Gln528Ter	p.Q528*	ENST00000324856	NM_006015.4	528	Cag/Tag					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158617518	158617518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	305	1118	5	ENST00000263640.3:c.1138C>T	p.Arg380Cys	p.R380C	ENST00000263640	NM_001105.4	380	Cgc/Tgc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134967266	134967266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	223	788	0	ENST00000398015.3:c.2605C>A	p.Pro869Thr	p.P869T	ENST00000398015	NM_004441.4	869	Ccc/Acc					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185190903	185190903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	262	1133	3	ENST00000265026.3:c.1784G>A	p.Ser595Asn	p.S595N	ENST00000265026	NM_004721.4	595	aGc/aAc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187558011	187558011	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	115	478	1	ENST00000441802.2:c.3700A>T	p.Lys1234Ter	p.K1234*	ENST00000441802	NM_005245.3	1234	Aaa/Taa					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	398881	398881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	184	742	0	ENST00000380956.4:c.691C>T	p.Pro231Ser	p.P231S	ENST00000380956	NM_001195286.1	231	Ccc/Tcc					NEWRECORD																																																																									
HIST1H3G	0	MSKCC	GRCh37	6	26271224	26271224	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1502	318	1574	0	ENST00000305910.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000305910	NM_003534.2	130	cGc/cTc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152007101	152007101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	196	742	0	ENST00000262189.6:c.799G>A	p.Glu267Lys	p.E267K	ENST00000262189	NM_170606.2	267	Gaa/Aaa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76813092	76813092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	227	937	0	ENST00000373344.5:c.6529G>A	p.Asp2177Asn	p.D2177N	ENST00000373344	NM_000489.3	2177	Gat/Aat					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3781284	3781290	+	frameshift_variant	Frame_Shift_Del	DEL	TCCACCA	TCCACCA	-			P-0006485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	425	981	0	ENST00000262367.5:c.5075_5081del	p.Leu1692ArgfsTer50	p.L1692Rfs*50	ENST00000262367	NM_004380.2	1692	cTGGTGGAg/cg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	126	560	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99182123	99182123	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	103	489	0	ENST00000074304.5:c.2188G>T	p.Glu730Ter	p.E730*	ENST00000074304	NM_001134224.1	730	Gag/Tag					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49399949	49399949	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	101	527	0	ENST00000418115.1:c.388G>T	p.Glu130Ter	p.E130*	ENST00000418115	NM_001664.2	130	Gag/Tag					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55131094	55131094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	100	483	0	ENST00000257290.5:c.637G>C	p.Glu213Gln	p.E213Q	ENST00000257290	NM_006206.4	213	Gag/Cag					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157256612	157256612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	68	442	0	ENST00000346085.5:c.1939G>A	p.Glu647Lys	p.E647K	ENST00000346085	NM_020732.3	647	Gaa/Aaa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115114124	115114124	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	42	509	0	ENST00000257566.3:c.1093C>A	p.Leu365Ile	p.L365I	ENST00000257566	NM_016569.3	365	Ctc/Atc					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89809336	89809336	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	76	318	0	ENST00000389301.3:c.3637C>A	p.Pro1213Thr	p.P1213T	ENST00000389301	NM_000135.2	1213	Cct/Act					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249037	55249038	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	136	432	0	ENST00000275493.2:c.2335_2336delinsTT	p.Gly779Phe	p.G779F	ENST00000275493	NM_005228.3	779	GGc/TTc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041640	47041642	+	stop_gained	Nonsense_Mutation	ONP	CGG	CGG	AGT			P-0005261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	70	591	1	ENST00000329236.7:c.1631_1633delinsAGT	p.Ser544_Ala545delinsTer	p.S544_A545delins*	ENST00000329236	NM_001204466.1	544	tCGGcc/tAGTcc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	66	423	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			46	314	375	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65339175	65339175	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1180823763		P-0006108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	187	374	0	ENST00000342505.4:c.361G>A	p.Asp121Asn	p.D121N	ENST00000342505	NM_002227.2	121	Gac/Aac					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56495537	56495537	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	235	444	0	ENST00000267101.3:c.3727C>G	p.Leu1243Val	p.L1243V	ENST00000267101	NM_001982.3	1243	Ctc/Gtc					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63530188	63530188	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	51	495	0	ENST00000307078.5:c.2247G>C	p.Glu749Asp	p.E749D	ENST00000307078	NM_004655.3	749	gaG/gaC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	213	711	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259581	89259581	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	82	354	0	ENST00000336596.2:c.725T>A	p.Met242Lys	p.M242K	ENST00000336596	NM_005233.5	242	aTg/aAg					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149447854	149447854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	132	596	0	ENST00000286301.3:c.1550C>A	p.Pro517Gln	p.P517Q	ENST00000286301	NM_005211.3	517	cCa/cAa					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94066586	94066586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	169	857	0	ENST00000369303.4:c.1173G>T	p.Gln391His	p.Q391H	ENST00000369303	NM_004440.3	391	caG/caT					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41730061	41730061	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1197	241	963	0	ENST00000242208.4:c.468G>A	p.Trp156Ter	p.W156*	ENST00000242208	NM_002192.2	156	tgG/tgA					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121434442	121434442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	129	642	0	ENST00000257555.6:c.1206C>A	p.Asn402Lys	p.N402K	ENST00000257555		402	aaC/aaA					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2216382	2216382	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	125	462	0	ENST00000398665.3:c.2026A>T	p.Lys676Ter	p.K676*	ENST00000398665	NM_032482.2	676	Aag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602697	10602697	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	164	510	1	ENST00000171111.5:c.881A>T	p.Asp294Val	p.D294V	ENST00000171111	NM_203500.1	294	gAc/gTc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041649	47041649	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	198	308	0	ENST00000329236.7:c.1640G>T	p.Gly547Val	p.G547V	ENST00000329236	NM_001204466.1	547	gGa/gTa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221311	1221317	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCCCC	TGGCCCC	-			P-0009894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	159	618	0	ENST00000326873.7:c.834_840del	p.Gly279ArgfsTer6	p.G279Rfs*6	ENST00000326873	NM_000455.4	278	tgTGGCCCC/tg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579410	7579410	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	68	402	0	ENST00000269305.4:c.277del	p.Leu93CysfsTer30	p.L93Cfs*30	ENST00000269305	NM_001126112.2	93	Ctg/tg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	44	248	0	ENST00000257430.4:c.4067C>G	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tGa					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99179990	99179990	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	46	477	0	ENST00000074304.5:c.1933A>T	p.Ser645Cys	p.S645C	ENST00000074304	NM_001134224.1	645	Agt/Tgt					NEWRECORD																																																																									
CDKN2B	0	MSKCC	GRCh37	9	22006093	22006093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	35	316	0	ENST00000276925.6:c.310G>A	p.Ala104Thr	p.A104T	ENST00000276925	NM_004936.3	104	Gcg/Acg					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73346856	73346856	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	41	405	0	ENST00000377767.4:c.1361A>C	p.Lys454Thr	p.K454T	ENST00000377767	NM_014953.3	454	aAg/aCg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041098	42041098	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	82	859	1	ENST00000219905.7:c.5476T>G	p.Leu1826Val	p.L1826V	ENST00000219905	NM_001164273.1	1826	Tta/Gta					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40491357	40491357	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	42	609	0	ENST00000264657.5:c.443T>G	p.Leu148Arg	p.L148R	ENST00000264657	NM_139276.2	148	cTt/cGt					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435014	56435014	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	29	389	0	ENST00000407977.2:c.2123A>G	p.Lys708Arg	p.K708R	ENST00000407977		708	aAg/aGg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15281283	15281283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	15	240	0	ENST00000263388.2:c.4973T>C	p.Leu1658Pro	p.L1658P	ENST00000263388	NM_000435.2	1658	cTc/cCc					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9538372	9538372	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	49	320	0	ENST00000353224.5:c.1626A>C	p.Glu542Asp	p.E542D	ENST00000353224	NM_177990.2	542	gaA/gaC					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44929269	44929269	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	68	328	0	ENST00000377967.4:c.2369A>C	p.Asn790Thr	p.N790T	ENST00000377967	NM_021140.2	790	aAc/aCc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53240764	53240764	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	52	409	0	ENST00000375401.3:c.1316A>C	p.Glu439Ala	p.E439A	ENST00000375401	NM_004187.3	439	gAg/gCg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	52	477	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1289	276	431	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55964310	55964310	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	33	504	0	ENST00000263923.4:c.2503A>G	p.Lys835Glu	p.K835E	ENST00000263923	NM_002253.2	835	Aag/Gag					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187557327	187557327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	53	524	1	ENST00000441802.2:c.4035G>T	p.Trp1345Cys	p.W1345C	ENST00000441802	NM_005245.3	1345	tgG/tgT					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180047993	180047993	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3129	470	426	0	ENST00000261937.6:c.2182G>C	p.Asp728His	p.D728H	ENST00000261937	NM_182925.4	728	Gac/Cac					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29910377	29910377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2844	227	438	0	ENST00000376809.5:c.47C>A	p.Ala16Asp	p.A16D	ENST00000376809	NM_002116.7	16	gCc/gAc					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65560499	65560499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	41	535	1	ENST00000358664.4:c.98G>T	p.Arg33Leu	p.R33L	ENST00000358664	NM_002382.4	33	cGa/cTa					NEWRECORD																																																																									
RAD51	0	MSKCC	GRCh37	15	41022099	41022099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	112	555	0	ENST00000267868.3:c.823G>A	p.Gly275Arg	p.G275R	ENST00000267868	NM_002875.4	275	Gga/Aga					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14041750	14041750	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	75	440	0	ENST00000311895.7:c.2297C>A	p.Pro766His	p.P766H	ENST00000311895	NM_005236.2	766	cCt/cAt					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9523334	9523334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	78	593	3	ENST00000353224.5:c.1903G>A	p.Glu635Lys	p.E635K	ENST00000353224	NM_177990.2	635	Gaa/Aaa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1335	178	625	0	ENST00000329236.7:c.1459+1G>A		p.X487_splice	ENST00000329236	NM_001204466.1	487						NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100626635	100626635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	131	676	1	ENST00000308731.7:c.295C>A	p.Pro99Thr	p.P99T	ENST00000308731	NM_000061.2	99	Cct/Act					NEWRECORD																																																																									
XIAP	0	MSKCC	GRCh37	X	123022568	123022568	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	52	489	1	ENST00000355640.3:c.977G>T	p.Gly326Val	p.G326V	ENST00000355640		326	gGg/gTg					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81372693	81372694	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	69	511	0	ENST00000222390.5:c.840_841delinsTT	p.Trp280_Glu281delinsCysTer	p.W280_E281delinsC*	ENST00000222390	NM_000601.4	280	tgGGag/tgTTag					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31945049	31945050	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0009710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3298	374	640	3	ENST00000340398.3:c.51_52delinsAA	p.Arg18Ser	p.R18S	ENST00000340398	NM_001013699.2	17	ccCCgc/ccAAgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	278	359	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111886006	111886006	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	280	710	0	ENST00000341259.2:c.1628A>C	p.Glu543Ala	p.E543A	ENST00000341259	NM_005475.2	543	gAg/gCg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89348955	89348955	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	266	715	0	ENST00000301030.4:c.3995A>G	p.Asp1332Gly	p.D1332G	ENST00000301030	NM_001256183.1	1332	gAc/gGc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766067	66766067	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	190	448	0	ENST00000374690.3:c.1079A>T	p.Gln360Leu	p.Q360L	ENST00000374690	NM_000044.3	360	cAg/cTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	662	446	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	220	379	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	446	511	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	185	304	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175182	112175182	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	124	240	0	ENST00000257430.4:c.3892del	p.Ser1298LeufsTer7	p.S1298Lfs*7	ENST00000257430	NM_000038.5	1297	gaT/ga					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36933539	36933539	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148104401		P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	356	577	1	ENST00000361632.4:c.1748G>A	p.Arg583His	p.R583H	ENST00000361632		583	cGt/cAt					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45798118	45798118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200495564		P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	203	287	0	ENST00000372115.3:c.691C>T	p.Arg231Cys	p.R231C	ENST00000372115	NM_001048171.1	231	Cgt/Tgt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117724421	117724421	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	450	508	0	ENST00000368508.3:c.458A>G	p.Tyr153Cys	p.Y153C	ENST00000368508	NM_002944.2	153	tAt/tGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	366	476	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
AC008738.1	0	MSKCC	GRCh37	19	33792755	33792757	+	splice_acceptor_variant,intron_variant,non_coding_transcript_variant	Splice_Site	DEL	GGC	GGC	-	rs781757114		P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	18	60	0	ENST00000425420.2:n.247-4_247-2del		p.X83_splice	ENST00000425420		83						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162050	47162050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	297	402	0	ENST00000409792.3:c.4076C>T	p.Ser1359Phe	p.S1359F	ENST00000409792	NM_014159.6	1359	tCc/tTc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163124	47163124	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs200816574		P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	306	407	0	ENST00000409792.3:c.3002C>G	p.Ser1001Cys	p.S1001C	ENST00000409792	NM_014159.6	1001	tCt/tGt					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138403476	138403476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	360	431	0	ENST00000289153.2:c.2306C>T	p.Ser769Leu	p.S769L	ENST00000289153	NM_006219.2	769	tCa/tTa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142176521	142176521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	405	465	0	ENST00000350721.4:c.7580G>A	p.Gly2527Glu	p.G2527E	ENST00000350721	NM_001184.3	2527	gGa/gAa					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77085411	77085411	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3044	300	460	0	ENST00000356341.3:c.440-1G>A		p.X147_splice	ENST00000356341	NM_002576.4	147						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	78	606	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741694	17741694	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	740	407	0	ENST00000250003.3:c.365T>G	p.Leu122Arg	p.L122R	ENST00000250003	NM_002478.4	122	cTg/cGg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	222	412	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876084	35876084	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0006033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	172	368	0	ENST00000303115.3:c.877-1G>C		p.X293_splice	ENST00000303115	NM_002185.3	293						NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176522551	176522551	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	2373	384	0	ENST00000292408.4:c.1648G>T	p.Val550Leu	p.V550L	ENST00000292408	NM_213647.1	550	Gtg/Ttg					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	393199	393199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	99	420	0	ENST00000380956.4:c.47C>T	p.Ala16Val	p.A16V	ENST00000380956	NM_001195286.1	16	gCg/gTg					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33288851	33288851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	151	208	1	ENST00000374542.5:c.701G>A	p.Arg234His	p.R234H	ENST00000374542	NM_001141970.1	234	cGc/cAc					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152129130	152129130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	70	546	3	ENST00000206249.3:c.83G>A	p.Arg28His	p.R28H	ENST00000206249	NM_000125.3	28	cGt/cAt					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162622179	162622179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	115	322	0	ENST00000366898.1:c.518C>T	p.Thr173Met	p.T173M	ENST00000366898	NM_004562.2	173	aCg/aTg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8636739	8636739	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	65	314	1	ENST00000356435.5:c.170G>A	p.Trp57Ter	p.W57*	ENST00000356435		57	tGg/tAg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139400024	139400024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	92	366	0	ENST00000277541.6:c.4324C>T	p.Pro1442Ser	p.P1442S	ENST00000277541	NM_017617.3	1442	Ccg/Tcg					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405072	70405072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	83	484	0	ENST00000373644.4:c.2586A>G	p.Ile862Met	p.I862M	ENST00000373644	NM_030625.2	862	atA/atG					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405530	70405530	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	67	298	0	ENST00000373644.4:c.3044T>C	p.Ile1015Thr	p.I1015T	ENST00000373644	NM_030625.2	1015	aTt/aCt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434090	49434090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	113	242	1	ENST00000301067.7:c.7463C>T	p.Ser2488Leu	p.S2488L	ENST00000301067	NM_003482.3	2488	tCg/tTg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	32	472	0	ENST00000342988.3:c.1051G>C	p.Asp351His	p.D351H	ENST00000342988	NM_005359.5	351	Gat/Cat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577567	7577567	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	501	448	0	ENST00000269305.4:c.714delT	p.Cys238Ter	p.C238*	ENST00000269305	NM_001126112.2	238	tgT/tg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191488	10191488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			231	89	360	0	ENST00000256474.2:c.481C>T	p.Arg161Ter	p.R161*	ENST00000256474	NM_000551.3	161	Cga/Tga					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86564327	86564327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			276	77	356	0	ENST00000274376.6:c.59G>A	p.Gly20Glu	p.G20E	ENST00000274376	NM_002890.2	20	gGa/gAa					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93969143	93969143	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			264	39	669	0	ENST00000369303.4:c.1853A>G	p.Asn618Ser	p.N618S	ENST00000369303	NM_004440.3	618	aAt/aGt					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781382	135781382	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			370	162	694	0	ENST00000298552.3:c.1583del	p.Gly528AlafsTer4	p.G528Afs*4	ENST00000298552	NM_001162426.1	528	gGc/gc					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248131	59248131	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			59	20	54	0	ENST00000371222.2:c.612G>C	p.Gln204His	p.Q204H	ENST00000371222	NM_002228.3	204	caG/caC					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88672102	88672102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007299-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			114	25	265	0	ENST00000372037.3:c.636G>T	p.Gln212His	p.Q212H	ENST00000372037	NM_004329.2	212	caG/caT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	17	212	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	9	185	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	923	672	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	495	527	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	92	498	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	107	389	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72821421	72821421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	63	606	0	ENST00000268489.5:c.10754C>G	p.Ser3585Cys	p.S3585C	ENST00000268489	NM_006885.3	3585	tCt/tGt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5222730	5222730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	51	157	0	ENST00000357368.4:c.3073G>A	p.Val1025Ile	p.V1025I	ENST00000357368	NM_002850.3	1025	Gtc/Atc					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18273219	18273219	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	131	514	0	ENST00000222254.8:c.1012G>A	p.Glu338Lys	p.E338K	ENST00000222254	NM_005027.3	338	Gag/Aag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173762	112173765	+	frameshift_variant	Frame_Shift_Del	DEL	CATA	CATA	ATT			P-0005189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	44	441	0	ENST00000257430.4:c.2471_2474delinsATT	p.Pro824HisfsTer3	p.P824Hfs*3	ENST00000257430	NM_000038.5	824	cCATAt/cATTt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89528621	89528621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	277	327	2	ENST00000336596.2:c.2921C>T	p.Thr974Met	p.T974M	ENST00000336596	NM_005233.5	974	aCg/aTg					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779662	3779662	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	39	322	1	ENST00000262367.5:c.5386C>T	p.Gln1796Ter	p.Q1796*	ENST00000262367	NM_004380.2	1796	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	464	334	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	1959	486	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67482843	67482843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	837	358	0	ENST00000327367.4:c.1247C>T	p.Ser416Phe	p.S416F	ENST00000327367	NM_005902.3	416	tCc/tTc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173582	112173582	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	304	394	0	ENST00000257430.4:c.2291T>A	p.Leu764Ter	p.L764*	ENST00000257430	NM_000038.5	764	tTa/tAa					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81888168	81888168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	727	546	2	ENST00000359376.3:c.313G>A	p.Val105Ile	p.V105I	ENST00000359376	NM_002661.3	105	Gtc/Atc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044962	47044962	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	34	245	0	ENST00000329236.7:c.2054T>G	p.Leu685Arg	p.L685R	ENST00000329236	NM_001204466.1	685	cTc/cGc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41513662	41513669	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAAGTC	ATCAAGTC	-			P-0007226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	352	559	0	ENST00000263253.7:c.568_575del	p.Gln190GlufsTer29	p.Q190Efs*29	ENST00000263253	NM_001429.3	189	aATCAAGTC/a					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0006061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	57	551	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43597813	43597813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	98	660	1	ENST00000355710.3:c.361G>A	p.Val121Ile	p.V121I	ENST00000355710	NM_020975.4	121	Gtc/Atc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1222987	1222987	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	99	328	0	ENST00000326873.7:c.924G>A	p.Trp308Ter	p.W308*	ENST00000326873	NM_000455.4	308	tgG/tgA					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158626973	158626973	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1302	83	890	0	ENST00000263640.3:c.697G>T	p.Ala233Ser	p.A233S	ENST00000263640	NM_001105.4	233	Gcc/Tcc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52696241	52696241	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	170	681	1	ENST00000394830.3:c.436C>T	p.Arg146Ter	p.R146*	ENST00000394830	NM_018313.4	146	Cga/Tga					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78829265	78829265	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0009611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	130	477	0	ENST00000306801.3:c.1316T>C	p.Val439Ala	p.V439A	ENST00000306801	NM_020761.2	439	gTg/gCg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	159	437	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101867538	101867546	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			P-0006123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	10	23	0	ENST00000374994.4:c.70_78delGCGGCGGCG	p.Ala24_Ala26del	p.A24_A26del	ENST00000374994	NM_004612.2	17	ctGGCGGCGGCg/ctg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151875096	151875096	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0006123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	29	136	0	ENST00000262189.6:c.7443-1G>C		p.X2481_splice	ENST00000262189	NM_170606.2	2481						NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108216552	108216553	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0006123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	155	628	0	ENST00000278616.4:c.8502_8503del	p.Phe2834LeufsTer13	p.F2834Lfs*13	ENST00000278616	NM_000051.3	2834	tTC/t					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	119	374	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765161	66765161	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs200185441		P-0006730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	56	219	0	ENST00000374690.3:c.173A>T	p.Gln58Leu	p.Q58L	ENST00000374690	NM_000044.3	58	cAg/cTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	219	410	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153271192	153271192	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0006730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	93	333	0	ENST00000281708.4:c.584+2T>G		p.X195_splice	ENST00000281708	NM_033632.3	195						NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738696	145738696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1537	129	309	2	ENST00000428558.2:c.2368G>A	p.Gly790Arg	p.G790R	ENST00000428558	NM_004260.3	790	Ggg/Agg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89836985	89836985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	179	415	0	ENST00000389301.3:c.2209G>A	p.Ala737Thr	p.A737T	ENST00000389301	NM_000135.2	737	Gct/Act					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1279	130	1216	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593597	55593597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	70	1039	0	ENST00000288135.5:c.1663G>A	p.Val555Ile	p.V555I	ENST00000288135	NM_000222.2	555	Gta/Ata					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119702	70119702	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1189	68	1079	0	ENST00000245479.2:c.704C>G	p.Pro235Arg	p.P235R	ENST00000245479	NM_000346.3	235	cCg/cGg					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10250948	10250948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	89	783	1	ENST00000340748.4:c.3532C>T	p.Arg1178Trp	p.R1178W	ENST00000340748		1178	Cgg/Tgg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391070	139391080	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAGCCGGGT	GCCAGCCGGGT	-			P-0007164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	59	795	0	ENST00000277541.6:c.7111_7121delACCCGGCTGGC	p.Thr2371HisfsTer132	p.T2371Hfs*132	ENST00000277541	NM_017617.3	2371	ACCCGGCTGGCc/c					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106155757	106155757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	144	363	0	ENST00000380013.4:c.658C>A	p.His220Asn	p.H220N	ENST00000380013	NM_001127208.2	220	Cac/Aac					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	243	592	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	163	364	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138198280	138198283	+	frameshift_variant	Frame_Shift_Del	DEL	GACA	GACA	-			P-0000098-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			273	111	302	0	ENST00000237289.4:c.875_878del	p.Thr292IlefsTer6	p.T292Ifs*6	ENST00000237289	NM_001270507.1	291	ttGACA/tt					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17127319	17127319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	183	484	0	ENST00000285071.4:c.535C>T	p.Arg179Trp	p.R179W	ENST00000285071	NM_144997.5	179	Cgg/Tgg					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56440661	56440661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	195	565	2	ENST00000407977.2:c.557T>C	p.Ile186Thr	p.I186T	ENST00000407977		186	aTt/aCt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220370	1220371	+	splice_acceptor_variant	Splice_Site	DEL	AG	AG	-			P-0004737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	213	480	0	ENST00000326873.7:c.465-2_465-1del		p.X155_splice	ENST00000326873	NM_000455.4	155						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577085	7577085	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	29	601	0	ENST00000269305.4:c.853G>T	p.Glu285Ter	p.E285*	ENST00000269305	NM_001126112.2	285	Gag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	261	223	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579366	7579366	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	292	364	0	ENST00000269305.4:c.321C>A	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taC/taA					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150550952	150550952	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	62	118	0	ENST00000369026.2:c.704T>A	p.Leu235Gln	p.L235Q	ENST00000369026	NM_021960.4	235	cTg/cAg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212252690	212252690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	191	367	0	ENST00000342788.4:c.3163G>T	p.Ala1055Ser	p.A1055S	ENST00000342788	NM_005235.2	1055	Gcc/Tcc					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178095905	178095905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	187	395	0	ENST00000397062.3:c.1426C>G	p.Leu476Val	p.L476V	ENST00000397062	NM_006164.4	476	Ctc/Gtc					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1260663	1260663	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	811	454	9	ENST00000310581.5:c.2896G>C	p.Ala966Pro	p.A966P	ENST00000310581	NM_198253.2	966	Gct/Cct					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372430	55372430	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1526	263	451	0	ENST00000297316.4:c.1120G>T	p.Glu374Ter	p.E374*	ENST00000297316	NM_022454.3	374	Gag/Tag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914812	32914812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	269	564	1	ENST00000380152.3:c.6320C>T	p.Pro2107Leu	p.P2107L	ENST00000380152		2107	cCt/cTt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9934536	9934536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1412	285	521	0	ENST00000330684.3:c.1619G>A	p.Ser540Asn	p.S540N	ENST00000330684	NM_001134407.1	540	aGt/aAt					NEWRECORD																																																																									
FGF4	0	MSKCC	GRCh37	11	69589526	69589558	+	inframe_deletion	In_Frame_Del	DEL	CGCGTGCGCGCCGCCGATGCGGCCGTCGGGGAG	CGCGTGCGCGCCGCCGATGCGGCCGTCGGGGAG	-			P-0006656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	52	140	0	ENST00000168712.1:c.295_327del	p.Leu99_Ala109del	p.L99_A109del	ENST00000168712	NM_002007.2	99	CTCCCCGACGGCCGCATCGGCGGCGCGCACGCG/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	988	391	3	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1490	551	703	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	1044	637	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	543	460	1	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112163677	112163677	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1528	477	646	0	ENST00000257430.4:c.1600A>T	p.Lys534Ter	p.K534*	ENST00000257430	NM_000038.5	534	Aaa/Taa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857925	9857925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1595	397	507	0	ENST00000330684.3:c.3476G>A	p.Arg1159His	p.R1159H	ENST00000330684	NM_001134407.1	1159	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173378	112173378	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1621	500	709	0	ENST00000257430.4:c.2087A>T	p.Glu696Val	p.E696V	ENST00000257430	NM_000038.5	696	gAa/gTa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	703	559	2	ENST00000257430.4:c.4199del	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	145	454	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89468488	89468488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	58	392	0	ENST00000336596.2:c.2022G>T	p.Met674Ile	p.M674I	ENST00000336596	NM_005233.5	674	atG/atT					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45799220	45799220	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	95	321	0	ENST00000372115.3:c.171G>T	p.Gln57His	p.Q57H	ENST00000372115	NM_001048171.1	57	caG/caT					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162729662	162729662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	82	381	0	ENST00000367921.3:c.748G>T	p.Val250Leu	p.V250L	ENST00000367921	NM_006182.2	250	Gtg/Ttg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178922372	178922372	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	125	362	0	ENST00000263967.3:c.1141C>G	p.Pro381Ala	p.P381A	ENST00000263967	NM_006218.2	381	Ccc/Gcc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532590	187532590	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	72	385	0	ENST00000441802.2:c.9803C>G	p.Ser3268Ter	p.S3268*	ENST00000441802	NM_005245.3	3268	tCa/tGa					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	112020778	112020778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1700	201	621	0	ENST00000368678.4:c.793C>A	p.Arg265Ser	p.R265S	ENST00000368678		265	Cgt/Agt					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729901	41729901	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1630	96	632	1	ENST00000242208.4:c.628G>A	p.Val210Ile	p.V210I	ENST00000242208	NM_002192.2	210	Gta/Ata					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729975	41729975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1737	94	602	1	ENST00000242208.4:c.554G>T	p.Ser185Ile	p.S185I	ENST00000242208	NM_002192.2	185	aGc/aTc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118363928	118363928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1228	78	389	0	ENST00000534358.1:c.5161G>A	p.Gly1721Arg	p.G1721R	ENST00000534358	NM_005933.3	1721	Ggg/Agg					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28644750	28644750	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	45	319	1	ENST00000241453.7:c.44-1G>C		p.X15_splice	ENST00000241453	NM_004119.2	15						NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220488	1220488	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	95	346	0	ENST00000326873.7:c.581A>G	p.Asp194Gly	p.D194G	ENST00000326873	NM_000455.4	194	gAc/gGc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11114057	11114057	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	156	504	0	ENST00000344626.4:c.1985C>A	p.Ser662Ter	p.S662*	ENST00000344626	NM_003072.3	662	tCa/tAa					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39746878	39746878	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	59	205	0	ENST00000361337.2:c.1892A>G	p.Asn631Ser	p.N631S	ENST00000361337	NM_003286.2	631	aAc/aGc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139396287	139396293	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCATC	CGGCATC	-			P-0009984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	119	432	0	ENST00000277541.6:c.5545_5551del	p.Asp1849LeufsTer36	p.D1849Lfs*36	ENST00000277541	NM_017617.3	1849	GATGCCGct/ct					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186502855	186502855	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	621	582	1	ENST00000323963.5:c.313C>A	p.Leu105Ile	p.L105I	ENST00000323963		105	Cta/Ata					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66270110	66270110	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	297	412	0	ENST00000273854.3:c.1772G>A	p.Gly591Asp	p.G591D	ENST00000273854	NM_004439.5	591	gGc/gAc					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93627354	93627354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	396	407	0	ENST00000375746.1:c.821C>T	p.Pro274Leu	p.P274L	ENST00000375746	NM_001174167.1	274	cCa/cTa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139392010	139392010	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	354	252	0	ENST00000277541.6:c.6181G>T	p.Glu2061Ter	p.E2061*	ENST00000277541	NM_017617.3	2061	Gag/Tag					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4398053	4398053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	793	419	0	ENST00000261254.3:c.617G>A	p.Ser206Asn	p.S206N	ENST00000261254	NM_001759.3	206	aGt/aAt					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4409154	4409154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	714	385	1	ENST00000261254.3:c.849C>A	p.Asp283Glu	p.D283E	ENST00000261254	NM_001759.3	283	gaC/gaA					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102811603	102811603	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	429	383	0	ENST00000307046.8:c.581G>T	p.Gly194Val	p.G194V	ENST00000307046	NM_001111285.1	194	gGa/gTa					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102813444	102813444	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	338	289	1	ENST00000307046.8:c.245G>A	p.Ser82Asn	p.S82N	ENST00000307046	NM_001111285.1	82	aGc/aAc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29001398	29001398	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	330	308	0	ENST00000282397.4:c.1334C>G	p.Pro445Arg	p.P445R	ENST00000282397	NM_002019.4	445	cCa/cGa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48916851	48916851	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	174	200	0	ENST00000267163.4:c.380+1G>T		p.X127_splice	ENST00000267163	NM_000321.2	127						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	676	488	1	ENST00000269305.4:c.818G>C	p.Arg273Pro	p.R273P	ENST00000269305	NM_001126112.2	273	cGt/cCt					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41244444	41244444	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	380	299	0	ENST00000357654.3:c.3104T>A	p.Val1035Asp	p.V1035D	ENST00000357654	NM_007294.3	1035	gTt/gAt					NEWRECORD																																																																									
HOXB13	0	MSKCC	GRCh37	17	46805949	46805949	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	349	334	0	ENST00000290295.7:c.7C>A	p.Pro3Thr	p.P3T	ENST00000290295	NM_006361.5	3	Ccc/Acc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11145764	11145764	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	670	445	0	ENST00000344626.4:c.4126G>T	p.Glu1376Ter	p.E1376*	ENST00000344626	NM_003072.3	1376	Gag/Tag					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31380506	31380506	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	585	440	0	ENST00000328111.2:c.996G>A	p.Met332Ile	p.M332I	ENST00000328111	NM_006892.3	332	atG/atA					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36028594	36028594	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	1159	430	1	ENST00000358208.4:c.936G>C	p.Gln312His	p.Q312H	ENST00000358208		312	caG/caC					NEWRECORD																																																																									
CRKL	0	MSKCC	GRCh37	22	21272326	21272326	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	235	416	0	ENST00000354336.3:c.104T>C	p.Met35Thr	p.M35T	ENST00000354336	NM_005207.3	35	aTg/aCg					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29085135	29085135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	24	12	0	ENST00000328354.6:c.1530G>T	p.Gln510His	p.Q510H	ENST00000328354	NM_007194.3	510	caG/caT					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143044462	143044463	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0007229-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	340	362	0	ENST00000262992.4:c.1999_2000delinsAT	p.Gly667Ile	p.G667I	ENST00000262992	NM_001101669.1	667	GGa/ATa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	49	399	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	514	445	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212251604	212251604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	90	400	0	ENST00000342788.4:c.3455C>A	p.Thr1152Asn	p.T1152N	ENST00000342788	NM_005235.2	1152	aCt/aAt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108168053	108168053	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs55870064		P-0009981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	230	531	0	ENST00000278616.4:c.4949A>G	p.Asn1650Ser	p.N1650S	ENST00000278616	NM_000051.3	1650	aAt/aGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	398	506	0	ENST00000269305.4:c.455C>G	p.Pro152Arg	p.P152R	ENST00000269305	NM_001126112.2	152	cCg/cGg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	43	138	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	117	346	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	67	133	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16258959	16258959	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	357	455	0	ENST00000375759.3:c.6224C>G	p.Ser2075Ter	p.S2075*	ENST00000375759	NM_015001.2	2075	tCa/tGa					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46725710	46725710	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	100	337	0	ENST00000371975.4:c.346G>C	p.Asp116His	p.D116H	ENST00000371975	NM_003579.3	116	Gat/Cat					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25466818	25466818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	138	360	0	ENST00000264709.3:c.1885G>A	p.Glu629Lys	p.E629K	ENST00000264709	NM_175629.2	629	Gag/Aag					NEWRECORD																																																																									
SHQ1	0	MSKCC	GRCh37	3	72799653	72799653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	146	330	0	ENST00000325599.8:c.1516G>C	p.Asp506His	p.D506H	ENST00000325599	NM_018130.2	506	Gat/Cat					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138376646	138376646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	50	214	0	ENST00000289153.2:c.2828G>T	p.Gly943Val	p.G943V	ENST00000289153	NM_006219.2	943	gGa/gTa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187521373	187521373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	44	287	0	ENST00000441802.2:c.11782G>A	p.Asp3928Asn	p.D3928N	ENST00000441802	NM_005245.3	3928	Gac/Aac					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176562864	176562864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	144	309	0	ENST00000439151.2:c.760C>A	p.Leu254Ile	p.L254I	ENST00000439151	NM_022455.4	254	Ctc/Atc					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675606	30675606	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	168	423	0	ENST00000376406.3:c.2750G>C	p.Arg917Thr	p.R917T	ENST00000376406	NM_014641.2	917	aGa/aCa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50468182	50468182	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	49	268	0	ENST00000331340.3:c.1417G>A	p.Asp473Asn	p.D473N	ENST00000331340	NM_006060.4	473	Gat/Aat					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108225599	108225599	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	57	263	0	ENST00000278616.4:c.8848G>C	p.Glu2950Gln	p.E2950Q	ENST00000278616	NM_000051.3	2950	Gag/Cag					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12022675	12022675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	78	189	0	ENST00000396373.4:c.781G>A	p.Glu261Lys	p.E261K	ENST00000396373	NM_001987.4	261	Gag/Aag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72829710	72829710	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	118	534	0	ENST00000268489.5:c.6871C>T	p.Gln2291Ter	p.Q2291*	ENST00000268489	NM_006885.3	2291	Cag/Tag					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3119314	3119314	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	117	355	0	ENST00000078429.4:c.846G>C	p.Lys282Asn	p.K282N	ENST00000078429	NM_002067.2	282	aaG/aaC					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	3659	418	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0008427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	839	500	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48916765	48916781	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGGAATCTGTATCTT	TGGGGAATCTGTATCTT	-			P-0008427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	472	338	0	ENST00000267163.4:c.296_312del	p.Trp99TyrfsTer5	p.W99Yfs*5	ENST00000267163	NM_000321.2	99	TGGGGAATCTGTATCTTt/t					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	247	473	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21620093	21620093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	60	362	0	ENST00000382592.4:c.73G>T	p.Gly25Trp	p.G25W	ENST00000382592	NM_014572.2	25	Ggg/Tgg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	289	619	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099124	27099124	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0001943-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			236	29	398	0	ENST00000324856.7:c.3539+1G>T		p.X1180_splice	ENST00000324856	NM_006015.4	1180						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47108569	47108569	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001943-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			237	46	305	0	ENST00000409792.3:c.6100G>T	p.Glu2034Ter	p.E2034*	ENST00000409792	NM_014159.6	2034	Gaa/Taa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187542782	187542782	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001943-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			223	42	456	0	ENST00000441802.2:c.4958T>G	p.Val1653Gly	p.V1653G	ENST00000441802	NM_005245.3	1653	gTg/gGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	216	377	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29012465	29012465	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	57	286	0	ENST00000282397.4:c.406G>A	p.Val136Ile	p.V136I	ENST00000282397	NM_002019.4	136	Gta/Ata					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11136143	11136143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	125	301	0	ENST00000344626.4:c.3127C>T	p.Arg1043Trp	p.R1043W	ENST00000344626	NM_003072.3	1043	Cgg/Tgg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604792	48604815	+	inframe_deletion	In_Frame_Del	DEL	AGTACTTCATACCATGCCGATTGC	AGTACTTCATACCATGCCGATTGC	-			P-0009262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	80	337	0	ENST00000342988.3:c.1616_1639del	p.Val539_Ala546del	p.V539_A546del	ENST00000342988	NM_005359.5	538	gaAGTACTTCATACCATGCCGATTGCa/gaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	19	448	2	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	204	466	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	167	436	0	ENST00000288602.6:c.1397G>C	p.Gly466Ala	p.G466A	ENST00000288602	NM_004333.4	466	gGa/gCa					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185155255	185155255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	143	377	1	ENST00000265026.3:c.496G>T	p.Glu166Ter	p.E166*	ENST00000265026	NM_004721.4	166	Gag/Tag					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187542665	187542665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	168	591	0	ENST00000441802.2:c.5075A>G	p.His1692Arg	p.H1692R	ENST00000441802	NM_005245.3	1692	cAt/cGt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55272957	55272957	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	134	388	1	ENST00000275493.2:c.3280A>T	p.Asn1094Tyr	p.N1094Y	ENST00000275493	NM_005228.3	1094	Aac/Tac					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69633488	69633488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	112	325	0	ENST00000334134.2:c.214G>C	p.Ala72Pro	p.A72P	ENST00000334134	NM_005247.2	72	Gcc/Ccc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68849596	68849596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	242	561	0	ENST00000261769.5:c.1499G>C	p.Gly500Ala	p.G500A	ENST00000261769	NM_004360.3	500	gGc/gCc					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89877420	89877420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	223	498	0	ENST00000389301.3:c.343G>T	p.Gly115Trp	p.G115W	ENST00000389301	NM_000135.2	115	Ggg/Tgg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29557286	29557286	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	168	549	0	ENST00000358273.4:c.2999G>C	p.Arg1000Pro	p.R1000P	ENST00000358273	NM_001042492.2	1000	cGt/cCt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76874439	76874439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	198	261	0	ENST00000373344.5:c.5283G>A	p.Met1761Ile	p.M1761I	ENST00000373344	NM_000489.3	1761	atG/atA					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100611089	100611089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	179	343	0	ENST00000308731.7:c.1517G>T	p.Cys506Phe	p.C506F	ENST00000308731	NM_000061.2	506	tGt/tTt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098370	11098370	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	203	605	2	ENST00000344626.4:c.888del	p.Ser297AlafsTer6	p.S297Afs*6	ENST00000344626	NM_003072.3	296	acG/ac					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187522482	187522482	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs79448797		P-0008810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	200	626	0	ENST00000441802.2:c.11581A>G	p.Thr3861Ala	p.T3861A	ENST00000441802	NM_005245.3	3861	Aca/Gca					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828221	72828222	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0008810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	309	836	0	ENST00000268489.5:c.8359_8360del	p.Pro2787CysfsTer3	p.P2787Cfs*3	ENST00000268489	NM_006885.3	2787	CCt/t					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72984744	72984744	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	456	738	0	ENST00000268489.5:c.2840del	p.Cys947SerfsTer19	p.C947Sfs*19	ENST00000268489	NM_006885.3	947	tGc/tc					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	137	306	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105639	27105639	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	121	359	0	ENST00000324856.7:c.5250del	p.Phe1750LeufsTer20	p.F1750Lfs*20	ENST00000324856	NM_006015.4	1750	ttC/tt					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41201170	41201171	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0009916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	81	390	0	ENST00000357654.3:c.5373_5374delinsAT	p.Val1792Leu	p.V1792L	ENST00000357654	NM_007294.3	1791	gtGGtg/gtATtg					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008870-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	342	480	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0009302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	37	200	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0009302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	124	662	7	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175366	112175366	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	36	236	0	ENST00000257430.4:c.4075A>T	p.Lys1359Ter	p.K1359*	ENST00000257430	NM_000038.5	1359	Aaa/Taa					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30051582	30051583	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0007111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	133	497	2	ENST00000338641.4:c.517-1_517delinsTT		p.X173_splice	ENST00000338641	NM_000268.3	173						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	49	338	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	75	548	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175556	112175556	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	52	421	0	ENST00000257430.4:c.4265A>G	p.Asp1422Gly	p.D1422G	ENST00000257430	NM_000038.5	1422	gAt/gGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	20	391	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	38	381	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174814	112174814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	46	397	1	ENST00000257430.4:c.3523C>T	p.Gln1175Ter	p.Q1175*	ENST00000257430	NM_000038.5	1175	Cag/Tag					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128845128	128845128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	35	395	3	ENST00000249373.3:c.622G>A	p.Glu208Lys	p.E208K	ENST00000249373	NM_005631.4	208	Gag/Aag					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0006845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	27	361	1	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974679	21974679	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0006845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	27	361	1	ENST00000304494.5:c.148C>T	p.Gln50Ter	p.Q50*	ENST00000304494	NM_000077.4	50	Cag/Tag					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115923	8115923	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	193	269	0	ENST00000346208.3:c.1271del	p.Pro424ArgfsTer51	p.P424Rfs*51	ENST00000346208		423	caC/ca					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29653250	29653250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	57	227	0	ENST00000358273.4:c.5248G>A	p.Asp1750Asn	p.D1750N	ENST00000358273	NM_001042492.2	1750	Gac/Aac					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	30946609	30946609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009726-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	229	320	2	ENST00000375687.4:c.31C>T	p.Arg11Cys	p.R11C	ENST00000375687	NM_015338.5	11	Cgc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	29	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0008011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	23	464	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	38	597	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	35	421	0	ENST00000263967.3:c.3129G>C	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atC					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90990535	90990535	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	83	315	0	ENST00000265433.3:c.497T>C	p.Ile166Thr	p.I166T	ENST00000265433	NM_002485.4	166	aTt/aCt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	64	390	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576885	7576903	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTCTTTGGCTGGGGAGA	TCTTCTTTGGCTGGGGAGA	-			P-0005005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	72	431	0	ENST00000269305.4:c.943_961del	p.Ser315AsnfsTer24	p.S315Nfs*24	ENST00000269305	NM_001126112.2	315	TCTCCCCAGCCAAAGAAGAaa/aa					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180047706	180047706	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	77	574	0	ENST00000261937.6:c.2309A>C	p.Asp770Ala	p.D770A	ENST00000261937	NM_182925.4	770	gAt/gCt					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10252864	10252864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	46	463	0	ENST00000340748.4:c.3101G>A	p.Ser1034Asn	p.S1034N	ENST00000340748		1034	aGc/aAc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600507	10600507	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	43	441	0	ENST00000171111.5:c.1348T>C	p.Trp450Arg	p.W450R	ENST00000171111	NM_203500.1	450	Tgg/Cgg					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30038259	30038259	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	131	561	0	ENST00000338641.4:c.432C>G	p.Tyr144Ter	p.Y144*	ENST00000338641	NM_000268.3	144	taC/taG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	75	195	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88423601	88423601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	85	387	1	ENST00000360948.2:c.2234G>A	p.Arg745Gln	p.R745Q	ENST00000360948	NM_001012338.2	745	cGg/cAg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88423598	88423598	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	47	402	0	ENST00000360948.2:c.2237A>C	p.Lys746Thr	p.K746T	ENST00000360948	NM_001012338.2	746	aAg/aCg					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65300248	65300271	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTAAAAGTGCTTCAAATCCTTC	TTTTAAAAGTGCTTCAAATCCTTC	AA			P-0009337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	27	240	0	ENST00000342505.4:c.3439_3462delGAAGGATTTGAAGCACTTTTAAAAinsTT	p.Glu1147PhefsTer6	p.E1147Ffs*6	ENST00000342505	NM_002227.2	1147	GAAGGATTTGAAGCACTTTTAAAA/TT					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	16	217	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	160	275	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713757	30713757	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	183	155	0	ENST00000359013.4:c.1157T>G	p.Leu386Arg	p.L386R	ENST00000359013	NM_001024847.2	386	cTc/cGc					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	348230	348230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	89	141	0	ENST00000262320.3:c.1276G>A	p.Asp426Asn	p.D426N	ENST00000262320	NM_003502.3	426	Gat/Aat					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974699	21974699	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	103	289	0	ENST00000304494.5:c.128del	p.Ser43IlefsTer10	p.S43Ifs*10	ENST00000304494	NM_000077.4	43	aGt/at					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974699	21974699	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	103	289	0	ENST00000304494.5:c.128del	p.Ser43IlefsTer10	p.S43Ifs*10	ENST00000304494	NM_000077.4	43	aGt/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577147	7577149	+	frameshift_variant	Frame_Shift_Del	DEL	AGA	AGA	T			P-0009443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	158	299	0	ENST00000269305.4:c.789_791delinsA	p.Asn263LysfsTer8	p.N263Kfs*8	ENST00000269305	NM_001126112.2	263	aaTCTa/aaAa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106951	27106951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	130	291	1	ENST00000324856.7:c.6562C>T	p.Gln2188Ter	p.Q2188*	ENST00000324856	NM_006015.4	2188	Cag/Tag					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865143	57865143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			5207	428	1024	3	ENST00000228682.2:c.2620C>A	p.Pro874Thr	p.P874T	ENST00000228682	NM_005269.2	874	Cct/Act					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865294	57865294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4538	307	863	0	ENST00000228682.2:c.2771C>T	p.Ser924Phe	p.S924F	ENST00000228682	NM_005269.2	924	tCc/tTc					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865652	57865652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4906	339	1021	0	ENST00000228682.2:c.3129C>G	p.Asp1043Glu	p.D1043E	ENST00000228682	NM_005269.2	1043	gaC/gaG					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865707	57865707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4573	320	1007	0	ENST00000228682.2:c.3184C>T	p.Pro1062Ser	p.P1062S	ENST00000228682	NM_005269.2	1062	Cct/Tct					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29685497	29685497	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	128	266	0	ENST00000358273.4:c.7971-1G>A		p.X2657_splice	ENST00000358273	NM_001042492.2	2657						NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937687	76937687	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	307	355	0	ENST00000373344.5:c.3061G>T	p.Glu1021Ter	p.E1021*	ENST00000373344	NM_000489.3	1021	Gag/Tag					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	88	684	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	180	580	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	257	485	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0008674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	315	485	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27056145	27056145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	83	382	0	ENST00000324856.7:c.1141T>C	p.Ser381Pro	p.S381P	ENST00000324856	NM_006015.4	381	Tcc/Ccc					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26970478	26970478	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	192	633	0	ENST00000381527.3:c.847T>A	p.Phe283Ile	p.F283I	ENST00000381527	NM_001260.1	283	Ttc/Atc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001551-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1722	335	636	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	63	319	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151845366	151845366	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	59	282	1	ENST00000262189.6:c.13646G>A	p.Arg4549His	p.R4549H	ENST00000262189	NM_170606.2	4549	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578293	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGGAGGGGCCAGACCTAA	GAGGAGGGGCCAGACCTAA	-			P-0009091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	57	366	0	ENST00000269305.4:c.560-4_574del		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183771	10183771	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	79	294	1	ENST00000256474.2:c.240T>A	p.Ser80Arg	p.S80R	ENST00000256474	NM_000551.3	80	agT/agA					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157495253	157495253	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	96	316	0	ENST00000346085.5:c.3135+2T>C		p.X1045_splice	ENST00000346085	NM_020732.3	1045						NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729724	41729724	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	111	493	0	ENST00000242208.4:c.805G>C	p.Gly269Arg	p.G269R	ENST00000242208	NM_002192.2	269	Ggg/Cgg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18435502	18435502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	22	330	0	ENST00000266497.5:c.487G>A	p.Glu163Lys	p.E163K	ENST00000266497		163	Gaa/Aaa					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042233	42042233	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	97	622	0	ENST00000219905.7:c.6428C>A	p.Ser2143Ter	p.S2143*	ENST00000219905	NM_001164273.1	2143	tCa/tAa					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643630	52643630	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	50	281	0	ENST00000394830.3:c.2266del	p.Leu756CysfsTer19	p.L756Cfs*19	ENST00000394830	NM_018313.4	756	Ctg/tg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	33	446	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	36	394	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46715720	46715720	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	62	675	0	ENST00000371975.4:c.139T>A	p.Phe47Ile	p.F47I	ENST00000371975	NM_003579.3	47	Ttc/Atc					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176523157	176523157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	46	457	1	ENST00000292408.4:c.1921G>A	p.Asp641Asn	p.D641N	ENST00000292408	NM_213647.1	641	Gac/Aac					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481418	140481418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	35	556	1	ENST00000288602.6:c.1390G>A	p.Gly464Arg	p.G464R	ENST00000288602	NM_004333.4	464	Gga/Aga					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41988428	41988428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	68	843	3	ENST00000219905.7:c.1220C>T	p.Thr407Ile	p.T407I	ENST00000219905	NM_001164273.1	407	aCa/aTa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602763	10602763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	43	456	2	ENST00000171111.5:c.815G>A	p.Arg272His	p.R272H	ENST00000171111	NM_203500.1	272	cGc/cAc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76845319	76845319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	62	735	0	ENST00000373344.5:c.6202C>A	p.Pro2068Thr	p.P2068T	ENST00000373344	NM_000489.3	2068	Ccc/Acc					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123176433	123176433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	86	615	0	ENST00000218089.9:c.400G>A	p.Glu134Lys	p.E134K	ENST00000218089	NM_001042749.1	134	Gaa/Aaa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29587467	29587470	+	frameshift_variant	Frame_Shift_Del	DEL	TGCT	TGCT	-			P-0009483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	61	442	0	ENST00000358273.4:c.4516_4519del	p.Ala1506TyrfsTer67	p.A1506Yfs*67	ENST00000358273	NM_001042492.2	1504	gTGCTt/gt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55233024	55233024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144943614		P-0008179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	444	467	1	ENST00000275493.2:c.1774G>A	p.Val592Ile	p.V592I	ENST00000275493	NM_005228.3	592	Gtc/Atc					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	463304	463304	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	445	647	0	ENST00000399788.2:c.967C>G	p.Leu323Val	p.L323V	ENST00000399788	NM_001042603.1	323	Cta/Gta					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	330	433	0	ENST00000288135.5:c.1676T>C	p.Val559Ala	p.V559A	ENST00000288135	NM_000222.2	559	gTt/gCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	67	333	0	ENST00000269305.4:c.920-1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108165759	108165759	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008161-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			428	209	489	0	ENST00000278616.4:c.4882A>G	p.Met1628Val	p.M1628V	ENST00000278616	NM_000051.3	1628	Atg/Gtg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220478	1220478	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008161-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			464	189	478	0	ENST00000326873.7:c.571A>T	p.Lys191Ter	p.K191*	ENST00000326873	NM_000455.4	191	Aaa/Taa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10599929	10599929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008161-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			550	524	608	0	ENST00000171111.5:c.1647del	p.Met550Ter	p.M550*	ENST00000171111	NM_203500.1	549	ccC/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	527	399	0	ENST00000269305.4:c.733G>C	p.Gly245Arg	p.G245R	ENST00000269305	NM_001126112.2	245	Ggc/Cgc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	171	371	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	22	382	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441422	52441422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	118	470	0	ENST00000460680.1:c.430C>G	p.His144Asp	p.H144D	ENST00000460680	NM_004656.3	144	Cat/Gat					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112179392	112179392	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	107	529	0	ENST00000257430.4:c.8101C>G	p.Gln2701Glu	p.Q2701E	ENST00000257430	NM_000038.5	2701	Cag/Gag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	209	453	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11217290	11217290	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	147	592	1	ENST00000361445.4:c.4388A>T	p.Tyr1463Phe	p.Y1463F	ENST00000361445	NM_004958.3	1463	tAt/tTt					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625390	69625390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	62	495	0	ENST00000334134.2:c.403C>G	p.Arg135Gly	p.R135G	ENST00000334134	NM_005247.2	135	Cgg/Ggg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41100936	41100936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	61	390	1	ENST00000373198.4:c.1420G>A	p.Glu474Lys	p.E474K	ENST00000373198	NM_133170.3	474	Gag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			108	394	448	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			115	638	383	2	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604764	48604766	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			140	192	465	1	ENST00000342988.3:c.1586_1588del	p.Leu529_His530delinsTyr	p.L529_H530delinsY	ENST00000342988	NM_005359.5	529	tTACac/tac					NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187447384	187447384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780987785		P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			991	54	383	0	ENST00000232014.4:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000232014	NM_001130845.1	270	cGa/cAa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55223570	55223570	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			976	238	569	0	ENST00000275493.2:c.937G>T	p.Ala313Ser	p.A313S	ENST00000275493	NM_005228.3	313	Gcc/Tcc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115109744	115109744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			894	317	530	0	ENST00000257566.3:c.2134G>A	p.Ala712Thr	p.A712T	ENST00000257566	NM_016569.3	712	Gcg/Acg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49424214	49424214	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004944-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			195	152	201	0	ENST00000301067.7:c.13848del	p.Ser4617ValfsTer23	p.S4617Vfs*23	ENST00000301067	NM_003482.3	4616	ctG/ct					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	22	230	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	132	513	1	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198270004	198270004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	96	356	0	ENST00000335508.6:c.1432C>A	p.Leu478Ile	p.L478I	ENST00000335508	NM_012433.2	478	Cta/Ata					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411624	63411624	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1399	142	532	0	ENST00000330258.3:c.1543C>G	p.Leu515Val	p.L515V	ENST00000330258	NM_152424.3	515	Ctt/Gtt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46244517	46244526	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGTAGCTA	CAGGTAGCTA	-			P-0009094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	89	313	0	ENST00000334344.6:c.2615_2624delTAGCTACAGG	p.Val872AspfsTer17	p.V872Dfs*17	ENST00000334344	NM_152641.2	871	CAGGTAGCTAca/ca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	119	305	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112926873	112926873	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	82	408	0	ENST00000351677.2:c.1493G>T	p.Arg498Leu	p.R498L	ENST00000351677	NM_002834.3	498	cGg/cTg					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986560	36986615	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGGATACCTGGCCCTGCAGCGCCGCGGGGCTGGCGGCGTGGTGCGCCAGGTCC	GGCTGGATACCTGGCCCTGCAGCGCCGCGGGGCTGGCGGCGTGGTGCGCCAGGTCC	-			P-0007422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	26	309	0	ENST00000354822.5:c.1074_1129del	p.Asp359ValfsTer61	p.D359Vfs*61	ENST00000354822	NM_001079668.2	358	ccGGACCTGGCGCACCACGCCGCCAGCCCCGCGGCGCTGCAGGGCCAGGTATCCAGCCtg/cctg					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36987082	36987082	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	44	226	0	ENST00000354822.5:c.607del	p.Val203CysfsTer25	p.V203Cfs*25	ENST00000354822	NM_001079668.2	203	Gtg/tg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120491164	120491164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	348	371	0	ENST00000256646.2:c.2625C>G	p.Asp875Glu	p.D875E	ENST00000256646	NM_024408.3	875	gaC/gaG					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937405	76937428	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTCTCAGTATCAGATGATGAAC	ATTTCTCAGTATCAGATGATGAAC	GAAAT			P-0008312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	110	523	0	ENST00000373344.5:c.3320_3343delinsATTTC	p.Cys1107TyrfsTer5	p.C1107Yfs*5	ENST00000373344	NM_000489.3	1107	tGTTCATCATCTGATACTGAGAAATat/tATTTCat					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0009835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	246	327	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202136318	202136318	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	190	346	0	ENST00000358485.4:c.562T>G	p.Ser188Ala	p.S188A	ENST00000358485	NM_001080125.1	188	Tcc/Gcc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47699337	47699337	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	256	512	0	ENST00000347630.2:c.171T>G	p.Phe57Leu	p.F57L	ENST00000347630	NM_001007230.1	57	ttT/ttG					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900171	101900171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	43	153	0	ENST00000374994.4:c.605C>T	p.Ala202Val	p.A202V	ENST00000374994	NM_004612.2	202	gCg/gTg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29445238	29445238	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	45	124	0	ENST00000389048.3:c.3487G>C	p.Asp1163His	p.D1163H	ENST00000389048	NM_004304.4	1163	Gat/Cat					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47677844	47677844	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	59	162	0	ENST00000347630.2:c.1021A>G	p.Met341Val	p.M341V	ENST00000347630	NM_001007230.1	341	Atg/Gtg					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63526126	63526126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	26	166	0	ENST00000307078.5:c.2500C>T	p.Arg834Trp	p.R834W	ENST00000307078	NM_004655.3	834	Cgg/Tgg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578275	7578277	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0009729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	243	520	0	ENST00000269305.4:c.572_574del	p.Pro191del	p.P191del	ENST00000269305	NM_001126112.2	191	cCTCag/cag					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13940431	13940431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	91	418	0	ENST00000405192.2:c.1075C>T	p.Pro359Ser	p.P359S	ENST00000405192	NM_001163147.1	359	Cca/Tca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	298	421	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	209	419	0	ENST00000326873.7:c.734+1G>A		p.X245_splice	ENST00000326873	NM_000455.4	245						NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56493634	56493634	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	269	524	1	ENST00000267101.3:c.2950C>T	p.Pro984Ser	p.P984S	ENST00000267101	NM_001982.3	984	Cct/Tct					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	29	364	1	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	32	363	0	ENST00000269305.4:c.374C>T	p.Thr125Met	p.T125M	ENST00000269305	NM_001126112.2	125	aCg/aTg					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	393199	393199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	29	423	2	ENST00000380956.4:c.47C>T	p.Ala16Val	p.A16V	ENST00000380956	NM_001195286.1	16	gCg/gTg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717608	89717608	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	20	330	0	ENST00000371953.3:c.635-2A>C		p.X212_splice	ENST00000371953	NM_000314.4	212						NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398306	25398306	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	33	394	0	ENST00000256078.4:c.13A>G	p.Lys5Glu	p.K5E	ENST00000256078	NM_033360.2	5	Aaa/Gaa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591910	48591910	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	53	565	0	ENST00000342988.3:c.1073G>A	p.Gly358Glu	p.G358E	ENST00000342988	NM_005359.5	358	gGa/gAa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175529	112175535	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTAAG	TGGTAAG	-			P-0008063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	47	361	0	ENST00000257430.4:c.4241_4247del	p.Val1414AlafsTer3	p.V1414Afs*3	ENST00000257430	NM_000038.5	1413	aTGGTAAGt/at					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	42	556	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	177	646	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188865	32188865	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138205668		P-0008095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	81	490	1	ENST00000375023.3:c.689G>A	p.Arg230His	p.R230H	ENST00000375023	NM_004557.3	230	cGt/cAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	24	288	1	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164658	112164658	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	40	351	0	ENST00000257430.4:c.1732G>T	p.Glu578Ter	p.E578*	ENST00000257430	NM_000038.5	578	Gaa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176206	112176206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008095-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	33	599	1	ENST00000257430.4:c.4915C>T	p.Pro1639Ser	p.P1639S	ENST00000257430	NM_000038.5	1639	Cca/Tca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	374	273	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593417	48593417	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	102	366	0	ENST00000342988.3:c.1168G>T	p.Glu390Ter	p.E390*	ENST00000342988	NM_005359.5	390	Gaa/Taa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68853209	68853209	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	129	520	0	ENST00000261769.5:c.1592A>G	p.Asn531Ser	p.N531S	ENST00000261769	NM_004360.3	531	aAc/aGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	140	477	0	ENST00000269305.4:c.658T>A	p.Tyr220Asn	p.Y220N	ENST00000269305	NM_001126112.2	220	Tat/Aat					NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0005333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	32	235	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151891141	151891141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	173	415	0	ENST00000262189.6:c.4613T>C	p.Leu1538Ser	p.L1538S	ENST00000262189	NM_170606.2	1538	tTg/tCg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191529	10191546	+	inframe_deletion	In_Frame_Del	DEL	TTACAGGAGACTGGACAT	TTACAGGAGACTGGACAT	-			P-0005333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	162	435	0	ENST00000256474.2:c.522_539del	p.Tyr175_Ile180del	p.Y175_I180del	ENST00000256474	NM_000551.3	174	aaTTACAGGAGACTGGACATc/aac					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52713685	52713691	+	frameshift_variant	Frame_Shift_Del	DEL	CACTGCT	CACTGCT	-			P-0005333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	197	420	0	ENST00000394830.3:c.37_43del	p.Ser14AlafsTer29	p.S14Afs*29	ENST00000394830	NM_018313.4	13	AGCAGTGtc/tc					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99160428	99160428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	59	361	0	ENST00000074304.5:c.907C>G	p.Leu303Val	p.L303V	ENST00000074304	NM_001134224.1	303	Ctc/Gtc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16024477	16024477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	88	310	2	ENST00000268712.3:c.1741C>A	p.Arg581Ser	p.R581S	ENST00000268712	NM_006311.3	581	Cgt/Agt					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42845341	42845341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	48	314	1	ENST00000398585.3:c.921G>T	p.Gln307His	p.Q307H	ENST00000398585	NM_001135099.1	307	caG/caT					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16029315	16029421	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGTACTCCCTATATCTACAAAAATAAAAATAAAATAAAAATAAACATTTAACTTATTATATAACTAATTATTTAACTCACTTGGAGTCTTCTTTTTCATCTTTTTC	CTGTACTCCCTATATCTACAAAAATAAAAATAAAATAAAAATAAACATTTAACTTATTATATAACTAATTATTTAACTCACTTGGAGTCTTCTTTTTCATCTTTTTC	-			P-0006283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	20	77	0	ENST00000268712.3:c.1609_1634+81del		p.X537_splice	ENST00000268712	NM_006311.3	537						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	37	532	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0008455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	208	228	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087566	27087566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	110	237	0	ENST00000324856.7:c.2140C>A	p.Leu714Ile	p.L714I	ENST00000324856	NM_006015.4	714	Ctc/Atc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152132774	152132774	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	64	197	0	ENST00000262189.6:c.98A>G	p.Asp33Gly	p.D33G	ENST00000262189	NM_170606.2	33	gAc/gGc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	27	453	0	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579344	7579345	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0006737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	108	604	3	ENST00000269305.4:c.342_343del	p.His115PhefsTer33	p.H115Ffs*33	ENST00000269305	NM_001126112.2	114	ttGCat/ttat					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174842	112174842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006737-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	122	451	0	ENST00000257430.4:c.3552del	p.Thr1185GlnfsTer80	p.T1185Qfs*80	ENST00000257430	NM_000038.5	1184	gCc/gc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	72	350	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	319	282	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42794714	42794714	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	56	304	0	ENST00000575354.2:c.1795delC	p.Arg599GlyfsTer129	p.R599Gfs*129	ENST00000575354	NM_015125.3	598	ttC/tt					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12626698	12626698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	48	348	0	ENST00000251849.4:c.1591G>T	p.Val531Phe	p.V531F	ENST00000251849	NM_002880.3	531	Gtc/Ttc					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1279547	1279547	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	90	318	0	ENST00000310581.5:c.1989C>G	p.Ser663Arg	p.S663R	ENST00000310581	NM_198253.2	663	agC/agG					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412344	139412344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	43	232	2	ENST00000277541.6:c.1301G>A	p.Gly434Asp	p.G434D	ENST00000277541	NM_017617.3	434	gGc/gAc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139413099	139413099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	49	407	0	ENST00000277541.6:c.1043C>A	p.Ala348Asp	p.A348D	ENST00000277541	NM_017617.3	348	gCc/gAc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133235885	133235885	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	69	189	0	ENST00000320574.5:c.3271G>T	p.Glu1091Ter	p.E1091*	ENST00000320574	NM_006231.2	1091	Gag/Tag					NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40460265	40460265	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	205	609	0	ENST00000345506.4:c.1976G>T	p.Arg659Leu	p.R659L	ENST00000345506	NM_003152.3	659	cGg/cTg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76812962	76812962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	111	243	0	ENST00000373344.5:c.6659C>T	p.Ser2220Leu	p.S2220L	ENST00000373344	NM_000489.3	2220	tCa/tTa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	90	356	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0009965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	101	389	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	53	141	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	53	141	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	53	141	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	901	329	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243800977	243800977	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	131	476	0	ENST00000263826.5:c.497G>A	p.Arg166Gln	p.R166Q	ENST00000263826	NM_005465.4	166	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	200	218	0	ENST00000269305.4:c.526T>G	p.Cys176Gly	p.C176G	ENST00000269305	NM_001126112.2	176	Tgc/Ggc					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38512402	38512402	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs5820346		P-0008953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	119	239	5	ENST00000254066.5:c.1319delC	p.Pro440ArgfsTer203	p.P440Rfs*203	ENST00000254066	NM_000964.3	438	gCc/gc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575055	48575056	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	CA			P-0008953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	141	355	0	ENST00000342988.3:c.250-1_250delinsCA		p.X84_splice	ENST00000342988	NM_005359.5	84						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			26	132	277	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
CTLA4	0	MSKCC	GRCh37	2	204735602	204735602	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	64	178	0	ENST00000302823.3:c.403T>A	p.Tyr135Asn	p.Y135N	ENST00000302823	NM_005214.4	135	Tac/Aac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	313	290	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48028285	48028285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	107	308	0	ENST00000234420.5:c.3163G>A	p.Ala1055Thr	p.A1055T	ENST00000234420	NM_000179.2	1055	Gca/Aca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579573	7579573	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	326	270	0	ENST00000269305.4:c.114del	p.Ala39GlnfsTer5	p.A39Qfs*5	ENST00000269305	NM_001126112.2	38	caA/ca					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40369393	40369393	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0009228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	466	768	0	ENST00000293328.3:c.1257+2T>C		p.X419_splice	ENST00000293328	NM_012448.3	419						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	59	528	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72241873	72241873	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1275	72	785	2	ENST00000357731.5:c.517C>T	p.Arg173Ter	p.R173*	ENST00000357731	NM_173808.2	173	Cga/Tga					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	35	294	0	ENST00000371953.3:c.274G>A	p.Asp92Asn	p.D92N	ENST00000371953	NM_000314.4	92	Gac/Aac					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0005961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	103	456	1	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	116	329	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	19	342	0	ENST00000269305.4:c.400T>G	p.Phe134Val	p.F134V	ENST00000269305	NM_001126112.2	134	Ttt/Gtt					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56178622	56178622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	160	325	0	ENST00000399503.3:c.3595C>T	p.Gln1199Ter	p.Q1199*	ENST00000399503	NM_005921.1	1199	Cag/Tag					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59878705	59878705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	218	550	0	ENST00000259008.2:c.1049G>T	p.Cys350Phe	p.C350F	ENST00000259008	NM_032043.2	350	tGt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	516	494	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	78	242	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178947199	178947199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	110	332	0	ENST00000263967.3:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000263967	NM_006218.2	879	Cag/Tag					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187521499	187521499	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	76	202	0	ENST00000441802.2:c.11656C>A	p.Leu3886Met	p.L3886M	ENST00000441802	NM_005245.3	3886	Ctg/Atg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391610	139391610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	160	346	0	ENST00000277541.6:c.6581C>G	p.Ser2194Cys	p.S2194C	ENST00000277541	NM_017617.3	2194	tCc/tGc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15298120	15298120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	398	448	0	ENST00000263388.2:c.1636G>A	p.Val546Met	p.V546M	ENST00000263388	NM_000435.2	546	Gtg/Atg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175412	112175412	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006575-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	222	243	0	ENST00000257430.4:c.4122del	p.Glu1374AspfsTer41	p.E1374Dfs*41	ENST00000257430	NM_000038.5	1374	gAa/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	18	499	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398286	+	missense_variant	Missense_Mutation	DNP	CA	CA	AG			P-0006372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	40	397	0	ENST00000256078.4:c.33_34delinsCT	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	11	gcTGgt/gcCTgt					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29445424	29445424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	407	484	0	ENST00000389048.3:c.3409G>A	p.Gly1137Arg	p.G1137R	ENST00000389048	NM_004304.4	1137	Gga/Aga					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29652961	29652968	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTAAAA	CTTTAAAA	-			P-0006932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	408	473	0	ENST00000358273.4:c.4960_4967del	p.Phe1654ArgfsTer5	p.F1654Rfs*5	ENST00000358273	NM_001042492.2	1653	cgCTTTAAAAca/cgca					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593602	55593617	+	protein_altering_variant	In_Frame_Del	DEL	GTGGAAGGTTGTTGAG	GTGGAAGGTTGTTGAG	ACAA			P-0006932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	720	492	0	ENST00000288135.5:c.1668_1683delinsACAA	p.Trp557_Glu561delinsGln	p.W557_E561delinsQ	ENST00000288135	NM_000222.2	556	caGTGGAAGGTTGTTGAG/caACAA					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55595517	55595519	+	missense_variant	Missense_Mutation	ONP	TAC	TAC	GAT			P-0006932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	379	418	0	ENST00000288135.5:c.2007_2009delinsGAT	p.Ile669_Thr670delinsMetIle	p.I669_T670delinsMI	ENST00000288135	NM_000222.2	669	atTACa/atGATa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	281	230	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220644	1220644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	110	578	1	ENST00000326873.7:c.662C>T	p.Pro221Leu	p.P221L	ENST00000326873	NM_000455.4	221	cCg/cTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	104	298	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685287	89685287	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	35	72	0	ENST00000371953.3:c.182A>G	p.His61Arg	p.H61R	ENST00000371953	NM_000314.4	61	cAt/cGt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180057627	180057627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	130	844	0	ENST00000261937.6:c.328G>A	p.Val110Ile	p.V110I	ENST00000261937	NM_182925.4	110	Gtc/Atc					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56438208	56438208	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	53	539	0	ENST00000407977.2:c.785C>G	p.Ser262Ter	p.S262*	ENST00000407977		262	tCa/tGa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573657	48573657	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	51	50	0	ENST00000342988.3:c.241A>G	p.Arg81Gly	p.R81G	ENST00000342988	NM_005359.5	81	Agg/Ggg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578473	+	frameshift_variant	Frame_Shift_Del	DEL	CGCGGGTGCCGGG	CGCGGGTGCCGGG	-			P-0009299-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	60	498	0	ENST00000269305.4:c.457_469del	p.Pro153SerfsTer13	p.P153Sfs*13	ENST00000269305	NM_001126112.2	153	CCCGGCACCCGCGtc/tc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	69	279	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156843448	156843448	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	33	188	0	ENST00000524377.1:c.874A>T	p.Thr292Ser	p.T292S	ENST00000524377	NM_002529.3	292	Acg/Tcg					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048661	180048661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	18	247	0	ENST00000261937.6:c.1901C>A	p.Ala634Asp	p.A634D	ENST00000261937	NM_182925.4	634	gCc/gAc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106513255	106513255	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	40	266	0	ENST00000359195.3:c.2159A>C	p.Tyr720Ser	p.Y720S	ENST00000359195	NM_002649.2	720	tAt/tCt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100922217	100922217	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	20	448	0	ENST00000325455.5:c.2295G>C	p.Trp765Cys	p.W765C	ENST00000325455	NM_001202474.3	765	tgG/tgC					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645288	67645288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	28	304	0	ENST00000264010.4:c.553C>T	p.Pro185Ser	p.P185S	ENST00000264010	NM_006565.3	185	Ccc/Tcc					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412370	63412370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	28	424	1	ENST00000330258.3:c.797C>A	p.Ala266Asp	p.A266D	ENST00000330258	NM_152424.3	266	gCc/gAc					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8074123	8074235	+	frameshift_variant	Frame_Shift_Del	DEL	GTATCTGAGCTAGTTAGGAATTCCACCTCACAGTCTGTGTCATCCAGAGAGAGGGCTTCAGAGATTGGCAACGGTGGAAGAGGCCTAGAACCCCGTTCACAAAGAGGGGCACA	GTATCTGAGCTAGTTAGGAATTCCACCTCACAGTCTGTGTCATCCAGAGAGAGGGCTTCAGAGATTGGCAACGGTGGAAGAGGCCTAGAACCCCGTTCACAAAGAGGGGCACA	-			P-0004990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	48	495	0	ENST00000377482.5:c.424_536del	p.Cys142ArgfsTer11	p.C142Rfs*11	ENST00000377482	NM_018948.3	142	TGTGCCCCTCTTTGTGAACGGGGTTCTAGGCCTCTTCCACCGTTGCCAATCTCTGAAGCCCTCTCTCTGGATGACACAGACTGTGAGGTGGAATTCCTAACTAGCTCAGATACa/a					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420190	49420190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	80	448	1	ENST00000301067.7:c.15559G>A	p.Ala5187Thr	p.A5187T	ENST00000301067	NM_003482.3	5187	Gcc/Acc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88423587	88423587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	52	546	1	ENST00000360948.2:c.2248G>A	p.Glu750Lys	p.E750K	ENST00000360948	NM_001012338.2	750	Gag/Aag					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225339062	225339062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	39	635	0	ENST00000264414.4:c.2207C>G	p.Pro736Arg	p.P736R	ENST00000264414	NM_003590.4	736	cCa/cGa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183806	10183806	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	37	318	0	ENST00000256474.2:c.275A>G	p.Asp92Gly	p.D92G	ENST00000256474	NM_000551.3	92	gAc/gGc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643328	52643328	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0008331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	55	447	0	ENST00000394830.3:c.2567+1G>T		p.X856_splice	ENST00000394830	NM_018313.4	856						NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225376168	225376198	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTACAATTGGTTCTTCCGTTGATTTGTCA	CTTTACAATTGGTTCTTCCGTTGATTTGTCA	-			P-0008331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	35	768	0	ENST00000264414.4:c.756_786del	p.Asp253TrpfsTer11	p.D253Wfs*11	ENST00000264414	NM_003590.4	252	ctTGACAAATCAACGGAAGAACCAATTGTAAAG/ct					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162414	47162414	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	61	479	0	ENST00000409792.3:c.3712del	p.Ser1238LeufsTer21	p.S1238Lfs*21	ENST00000409792	NM_014159.6	1238	Tct/ct					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183811	10183818	+	protein_altering_variant	In_Frame_Del	DEL	GAGCCGCA	GAGCCGCA	TC			P-0008331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	36	304	0	ENST00000256474.2:c.280_287delinsTC	p.Glu94_Gln96delinsSer	p.E94_Q96delinsS	ENST00000256474	NM_000551.3	94	GAGCCGCAg/TCg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	247	269	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	559	582	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99500413	99500413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	259	563	0	ENST00000268035.6:c.3846C>G	p.Ser1282Arg	p.S1282R	ENST00000268035	NM_000875.3	1282	agC/agG					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29548908	29548908	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	175	349	0	ENST00000358273.4:c.1682G>A	p.Trp561Ter	p.W561*	ENST00000358273	NM_001042492.2	561	tGg/tAg					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060953	38060968	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCCCTGTCGCCGT	CGCCCCCTGTCGCCGT	-			P-0007808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	129	226	1	ENST00000250448.2:c.1021_1036del	p.Thr341ProfsTer4	p.T341Pfs*4	ENST00000250448	NM_004496.3	341	ACGGCGACAGGGGGCGcc/cc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	244	376	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225400277	225400277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	130	356	0	ENST00000264414.4:c.346A>G	p.Met116Val	p.M116V	ENST00000264414	NM_003590.4	116	Atg/Gtg					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56493802	56493802	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200017094		P-0006640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	104	313	0	ENST00000267101.3:c.3118C>T	p.Arg1040Trp	p.R1040W	ENST00000267101	NM_001982.3	1040	Cgg/Tgg					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56494012	56494012	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	163	324	0	ENST00000267101.3:c.3184C>G	p.Leu1062Val	p.L1062V	ENST00000267101	NM_001982.3	1062	Ctt/Gtt					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14021892	14021892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	62	444	1	ENST00000311895.7:c.592G>T	p.Val198Leu	p.V198L	ENST00000311895	NM_005236.2	198	Gta/Tta					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579315	7579315	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	224	574	3	ENST00000269305.4:c.372C>A	p.Cys124Ter	p.C124*	ENST00000269305	NM_001126112.2	124	tgC/tgA					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618805	37618806	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0005501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1127	139	863	0	ENST00000447079.4:c.482_483del	p.Tyr161TrpfsTer38	p.Y161Wfs*38	ENST00000447079	NM_015083.1	161	TAt/t					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	119	466	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138375075	138375075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	124	598	1	ENST00000289153.2:c.2984G>A	p.Arg995Gln	p.R995Q	ENST00000289153	NM_006219.2	995	cGg/cAg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440866	52440866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	93	963	1	ENST00000460680.1:c.638G>A	p.Arg213His	p.R213H	ENST00000460680	NM_004656.3	213	cGt/cAt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52620685	52620685	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	93	417	0	ENST00000394830.3:c.3068C>G	p.Pro1023Arg	p.P1023R	ENST00000394830	NM_018313.4	1023	cCa/cGa					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	396443	396443	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	232	1092	0	ENST00000262320.3:c.583G>T	p.Glu195Ter	p.E195*	ENST00000262320	NM_003502.3	195	Gaa/Taa					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180051038	180051066	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTCTTGCTGCTGCCGCCGCCGGCTGCC	AGGTCTTGCTGCTGCCGCCGCCGGCTGCC	-			P-0006409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	160	855	0	ENST00000261937.6:c.1422-5_1445del		p.X474_splice	ENST00000261937	NM_182925.4	474						NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112058	115112058	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	139	541	0	ENST00000257566.3:c.1682T>C	p.Met561Thr	p.M561T	ENST00000257566	NM_016569.3	561	aTg/aCg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2134255	2134255	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	145	568	0	ENST00000219476.3:c.4032G>C	p.Glu1344Asp	p.E1344D	ENST00000219476	NM_000548.3	1344	gaG/gaC					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546829	9546829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	180	573	1	ENST00000353224.5:c.1193C>A	p.Ala398Asp	p.A398D	ENST00000353224	NM_177990.2	398	gCt/gAt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11152063	11152082	+	frameshift_variant	Frame_Shift_Del	DEL	CGACGCCGGCTCCTCCACCC	CGACGCCGGCTCCTCCACCC	-			P-0005046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	418	553	0	ENST00000344626.4:c.4255_4274delGCCGGCTCCTCCACCCCGAC	p.Ala1419HisfsTer29	p.A1419Hfs*29	ENST00000344626	NM_003072.3	1417	agCGACGCCGGCTCCTCCACCCcg/agcg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578266	7578266	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	389	626	0	ENST00000269305.4:c.583delA	p.Ile195SerfsTer52	p.I195Sfs*52	ENST00000269305	NM_001126112.2	195	Atc/tc					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149983	202150006	+	inframe_deletion	In_Frame_Del	DEL	CAGAGGGAACCTGGTACATCCAGT	CAGAGGGAACCTGGTACATCCAGT	-			P-0005046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	191	601	0	ENST00000358485.4:c.1426_1449delGAGGGAACCTGGTACATCCAGTCA	p.Glu476_Ser483del	p.E476_S483del	ENST00000358485	NM_001080125.1	475	gCAGAGGGAACCTGGTACATCCAGTca/gca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579875	7579875	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	412	554	0	ENST00000269305.4:c.38del	p.Pro13LeufsTer2	p.P13Lfs*2	ENST00000269305	NM_001126112.2	13	cCt/ct					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	55	215	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8449827	8449827	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	140	298	1	ENST00000356435.5:c.3886G>C	p.Glu1296Gln	p.E1296Q	ENST00000356435		1296	Gag/Cag					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133256141	133256141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	241	461	2	ENST00000320574.5:c.520G>A	p.Val174Met	p.V174M	ENST00000320574	NM_006231.2	174	Gtg/Atg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42003545	42003545	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	309	580	0	ENST00000219905.7:c.3082C>G	p.Gln1028Glu	p.Q1028E	ENST00000219905	NM_001164273.1	1028	Caa/Gaa					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	343537	343537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	266	569	0	ENST00000262320.3:c.2137C>T	p.Arg713Cys	p.R713C	ENST00000262320	NM_003502.3	713	Cgt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006837-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			609	385	545	0	ENST00000269305.4:c.643A>C	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	Agt/Cgt					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138376590	138376590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006837-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			775	389	506	1	ENST00000289153.2:c.2884T>A	p.Tyr962Asn	p.Y962N	ENST00000289153	NM_006219.2	962	Tat/Aat					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89653859	89653860	+	stop_gained	Nonsense_Mutation	DNP	GT	GT	TG			P-0006837-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			376	197	328	0	ENST00000371953.3:c.157_158delinsTG	p.Val53Ter	p.V53*	ENST00000371953	NM_000314.4	53	GTa/TGa					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148508728	148508728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	601	515	0	ENST00000320356.2:c.1936T>C	p.Tyr646His	p.Y646H	ENST00000320356	NM_004456.4	646	Tac/Cac					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593667	55593669	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0005146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	481	420	0	ENST00000288135.5:c.1735_1737del	p.Asp579del	p.D579del	ENST00000288135	NM_000222.2	578	tATGat/tat					NEWRECORD																																																																									
HIST1H3C	0	MSKCC	GRCh37	6	26045780	26045780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1295	116	1084	0	ENST00000540144.1:c.142G>A	p.Ala48Thr	p.A48T	ENST00000540144	NM_003531.2	48	Gcc/Acc					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43622089	43622089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	28	357	0	ENST00000355710.3:c.3106G>C	p.Glu1036Gln	p.E1036Q	ENST00000355710	NM_020975.4	1036	Gag/Cag					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114917823	114917823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	349	698	0	ENST00000543371.1:c.1313C>T	p.Thr438Ile	p.T438I	ENST00000543371	NM_001198531.1	438	aCc/aTc					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119148958	119148958	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	163	447	0	ENST00000264033.4:c.1178T>G	p.Ile393Ser	p.I393S	ENST00000264033	NM_005188.3	393	aTt/aGt					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103527891	103527891	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	57	430	0	ENST00000355739.4:c.3199T>G	p.Ser1067Ala	p.S1067A	ENST00000355739	NM_000123.3	1067	Tca/Gca					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89348280	89348280	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	324	983	0	ENST00000301030.4:c.4670C>T	p.Pro1557Leu	p.P1557L	ENST00000301030	NM_001256183.1	1557	cCa/cTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	205	407	0	ENST00000269305.4:c.989T>A	p.Leu330His	p.L330H	ENST00000269305	NM_001126112.2	330	cTt/cAt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	41	428	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	23	493	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	29	306	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	29	306	1	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	740	684	4	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175225	112175225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	534	360	0	ENST00000257430.4:c.3934G>T	p.Gly1312Ter	p.G1312*	ENST00000257430	NM_000038.5	1312	Gga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1127	210	572	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579508	7579508	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	143	518	0	ENST00000269305.4:c.179delC	p.Pro60GlnfsTer63	p.P60Qfs*63	ENST00000269305	NM_001126112.2	60	cCa/ca					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259099	89259099	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	196	449	2	ENST00000336596.2:c.243G>T	p.Trp81Cys	p.W81C	ENST00000336596	NM_005233.5	81	tgG/tgT					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18271736	18271736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	141	434	0	ENST00000222254.8:c.423C>A	p.Asp141Glu	p.D141E	ENST00000222254	NM_005027.3	141	gaC/gaA					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115120893	115120893	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	37	447	0	ENST00000257566.3:c.113del	p.Pro38ArgfsTer7	p.P38Rfs*7	ENST00000257566	NM_016569.3	38	cCg/cg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	30	377	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610136	10610136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	61	417	0	ENST00000171111.5:c.574G>A	p.Glu192Lys	p.E192K	ENST00000171111	NM_203500.1	192	Gag/Aag					NEWRECORD																																																																									
MYD88	0	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	34	372	0	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577404	64577404	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1454	148	574	1	ENST00000337652.1:c.178G>T	p.Glu60Ter	p.E60*	ENST00000337652	NM_130803.2	60	Gag/Tag					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73352346	73352346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1492	83	638	0	ENST00000377767.4:c.559G>C	p.Glu187Gln	p.E187Q	ENST00000377767	NM_014953.3	187	Gaa/Caa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11168944	11168944	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	47	359	0	ENST00000344626.4:c.4438C>T	p.Gln1480Ter	p.Q1480*	ENST00000344626	NM_003072.3	1480	Cag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	23	274	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578530	7578530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	21	319	0	ENST00000269305.4:c.400T>C	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	Ttt/Ctt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	127	388	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117681010	117681010	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	85	316	0	ENST00000368508.3:c.3610C>G	p.Leu1204Val	p.L1204V	ENST00000368508	NM_002944.2	1204	Ctc/Gtc					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70014094	70014094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1445	188	682	2	ENST00000352241.4:c.1258C>A	p.Pro420Thr	p.P420T	ENST00000352241	NM_198159.2	420	Ccc/Acc					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106190831	106190831	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	113	398	1	ENST00000380013.4:c.4109G>T	p.Gly1370Val	p.G1370V	ENST00000380013	NM_001127208.2	1370	gGg/gTg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439873	52439873	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	109	337	0	ENST00000460680.1:c.839del	p.Gln280ArgfsTer55	p.Q280Rfs*55	ENST00000460680	NM_004656.3	280	cAg/cg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42034920	42034920	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	382	525	1	ENST00000219905.7:c.4762C>T	p.Gln1588Ter	p.Q1588*	ENST00000219905	NM_001164273.1	1588	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576870	7576870	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	385	402	0	ENST00000269305.4:c.976G>A	p.Glu326Lys	p.E326K	ENST00000269305	NM_001126112.2	326	Gaa/Aaa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339254	70339254	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	509	553	0	ENST00000374080.3:c.131G>T	p.Gly44Val	p.G44V	ENST00000374080		44	gGt/gTt					NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	161	397	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	173	462	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243828162	243828162	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	46	384	1	ENST00000263826.5:c.196C>T	p.Arg66Ter	p.R66*	ENST00000263826	NM_005465.4	66	Cga/Tga					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153258970	153258970	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	156	398	0	ENST00000281708.4:c.845C>A	p.Ser282Ter	p.S282*	ENST00000281708	NM_033632.3	282	tCa/tAa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56183252	56183252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	77	429	0	ENST00000399503.3:c.4162G>C	p.Asp1388His	p.D1388H	ENST00000399503	NM_005921.1	1388	Gat/Cat					NEWRECORD																																																																									
HIST1H3C	0	MSKCC	GRCh37	6	26045765	26045765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	150	841	1	ENST00000540144.1:c.127C>T	p.Arg43Cys	p.R43C	ENST00000540144	NM_003531.2	43	Cgc/Tgc					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114711344	114711344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	113	257	0	ENST00000543371.1:c.359C>T	p.Ser120Leu	p.S120L	ENST00000543371	NM_001198531.1	120	tCg/tTg					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2223313	2223313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	73	499	0	ENST00000326181.6:c.925G>A	p.Asp309Asn	p.D309N	ENST00000326181	NM_032271.2	309	Gac/Aac					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66942821	66942821	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	182	529	0	ENST00000374690.3:c.2602C>A	p.Gln868Lys	p.Q868K	ENST00000374690	NM_000044.3	868	Cag/Aag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175433	112175434	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	158	329	0	ENST00000257430.4:c.4143_4144del	p.Leu1382HisfsTer3	p.L1382Hfs*3	ENST00000257430	NM_000038.5	1381	cCA/c					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	111	384	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3777874	3777874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	64	744	1	ENST00000262367.5:c.7174G>A	p.Ala2392Thr	p.A2392T	ENST00000262367	NM_004380.2	2392	Gcc/Acc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55956172	55956172	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	70	493	1	ENST00000263923.4:c.3143G>T	p.Gly1048Val	p.G1048V	ENST00000263923	NM_002253.2	1048	gGc/gTc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116397818	116397819	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0005544-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1297	69	501	0	ENST00000397752.3:c.2092_2093delinsTT	p.Thr698Phe	p.T698F	ENST00000397752	NM_000245.2	698	ACt/TTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			853	119	433	0	ENST00000269305.4:c.464C>T	p.Thr155Ile	p.T155I	ENST00000269305	NM_001126112.2	155	aCc/aTc					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39607452	39607452	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			898	124	538	1	ENST00000262039.4:c.1530T>A	p.Asp510Glu	p.D510E	ENST00000262039	NM_002647.2	510	gaT/gaA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	420	389	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521670	89521670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	260	414	0	ENST00000336596.2:c.2747C>G	p.Thr916Arg	p.T916R	ENST00000336596	NM_005233.5	916	aCa/aGa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467446	66467446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	310	346	0	ENST00000273854.3:c.823C>T	p.His275Tyr	p.H275Y	ENST00000273854	NM_004439.5	275	Cac/Tac					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3778153	3778153	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006675-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	317	350	0	ENST00000262367.5:c.6895C>A	p.Gln2299Lys	p.Q2299K	ENST00000262367	NM_004380.2	2299	Cag/Aag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0007671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	299	482	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	115	406	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	184	868	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57754325	57754325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1197	70	552	1	ENST00000274289.3:c.526G>T	p.Val176Leu	p.V176L	ENST00000274289	NM_006622.3	176	Gtg/Ttg					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7217306	7217306	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0007671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	388	673	0	ENST00000380728.2:c.399del	p.Ser134AlafsTer211	p.S134Afs*211	ENST00000380728		133	ggG/gg					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028668	12028668	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	312	641	0	ENST00000353533.5:c.871del	p.Trp291GlyfsTer27	p.W291Gfs*27	ENST00000353533	NM_003010.3	291	Tgg/gg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	99	392	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193111110	193111110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	153	366	0	ENST00000367435.3:c.643G>T	p.Asp215Tyr	p.D215Y	ENST00000367435	NM_024529.4	215	Gat/Tat					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193121549	193121549	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1275	143	479	0	ENST00000367435.3:c.947A>G	p.His316Arg	p.H316R	ENST00000367435	NM_024529.4	316	cAt/cGt					NEWRECORD																																																																									
HIST1H3J	0	MSKCC	GRCh37	6	27858549	27858549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1329	108	650	0	ENST00000359303.2:c.22G>A	p.Ala8Thr	p.A8T	ENST00000359303	NM_003535.2	8	Gct/Act					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610096	10610096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	62	423	0	ENST00000171111.5:c.614A>T	p.Glu205Val	p.E205V	ENST00000171111	NM_203500.1	205	gAg/gTg					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17948788	17948788	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	70	555	0	ENST00000458235.1:c.1654G>T	p.Glu552Ter	p.E552*	ENST00000458235	NM_000215.3	552	Gag/Tag					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	846	538	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55259442	55259442	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	768	393	0	ENST00000275493.2:c.2500G>T	p.Val834Leu	p.V834L	ENST00000275493	NM_005228.3	834	Gtg/Ttg					NEWRECORD																																																																									
SOCS1	0	MSKCC	GRCh37	16	11349224	11349224	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	44	57	0	ENST00000332029.2:c.112C>T	p.Arg38Cys	p.R38C	ENST00000332029	NM_003745.1	38	Cgc/Tgc					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56348510	56348510	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	459	670	2	ENST00000348428.3:c.318G>C	p.Leu106Phe	p.L106F	ENST00000348428	NM_006785.3	106	ttG/ttC					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162125	47162125	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	332	294	0	ENST00000409792.3:c.4001del	p.Asp1334ValfsTer39	p.D1334Vfs*39	ENST00000409792	NM_014159.6	1334	gAt/gt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057948	27057957	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGCCACAG	ACAGCCACAG	-			P-0006886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	217	429	0	ENST00000324856.7:c.1656_1665del	p.Gln553LeufsTer63	p.Q553Lfs*63	ENST00000324856	NM_006015.4	552	tcACAGCCACAG/tc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52438542	52438542	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	231	427	1	ENST00000460680.1:c.1177C>T	p.Gln393Ter	p.Q393*	ENST00000460680	NM_004656.3	393	Cag/Tag					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	262	373	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0006488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	69	444	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50467675	50467675	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs759124417		P-0006488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	135	545	0	ENST00000331340.3:c.910G>A	p.Glu304Lys	p.E304K	ENST00000331340	NM_006060.4	304	Gaa/Aaa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178162	112178162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	68	448	0	ENST00000257430.4:c.6871C>T	p.Gln2291Ter	p.Q2291*	ENST00000257430	NM_000038.5	2291	Caa/Taa					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971027	21971028	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0006488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	170	348	0	ENST00000304494.5:c.330_331delinsAA	p.Trp110_Gly111delinsTer	p.W110_G111delins*	ENST00000304494	NM_000077.4	110	tgGGgc/tgAAgc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971027	21971028	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0006488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	170	348	0	ENST00000304494.5:c.330_331delinsAA	p.Trp110_Gly111delinsTer	p.W110_G111delins*	ENST00000304494	NM_000077.4	110	tgGGgc/tgAAgc					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971027	21971028	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0006488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	170	348	0	ENST00000304494.5:c.330_331delinsAA	p.Trp110_Gly111delinsTer	p.W110_G111delins*	ENST00000304494	NM_000077.4	110	tgGGgc/tgAAgc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600428	10600429	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1456	148	719	0	ENST00000171111.5:c.1426_1427delinsAA	p.Gly476Lys	p.G476K	ENST00000171111	NM_203500.1	476	GGg/AAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	150	343	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212286820	212286820	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	97	323	0	ENST00000342788.4:c.2876T>C	p.Ile959Thr	p.I959T	ENST00000342788	NM_005235.2	959	aTt/aCt					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50450397	50450397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	73	303	0	ENST00000331340.3:c.581C>T	p.Thr194Met	p.T194M	ENST00000331340	NM_006060.4	194	aCg/aTg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8517857	8517857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	160	447	0	ENST00000356435.5:c.1534C>G	p.Gln512Glu	p.Q512E	ENST00000356435		512	Cag/Gag					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105241459	105241459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	82	480	1	ENST00000349310.3:c.521G>A	p.Arg174His	p.R174H	ENST00000349310	NM_001014432.1	174	cGc/cAc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15281344	15281344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	42	362	0	ENST00000263388.2:c.4912G>T	p.Glu1638Ter	p.E1638*	ENST00000263388	NM_000435.2	1638	Gaa/Taa					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39750689	39750689	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	75	204	0	ENST00000361337.2:c.2089C>T	p.Gln697Ter	p.Q697*	ENST00000361337	NM_003286.2	697	Cag/Tag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624298	89624298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	185	148	0	ENST00000371953.3:c.72C>G	p.Asp24Glu	p.D24E	ENST00000371953	NM_000314.4	24	gaC/gaG					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425016	49425016	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	312	351	0	ENST00000301067.7:c.13472T>C	p.Ile4491Thr	p.I4491T	ENST00000301067	NM_003482.3	4491	aTt/aCt					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57863427	57863427	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2309	289	471	1	ENST00000228682.2:c.1522C>T	p.Gln508Ter	p.Q508*	ENST00000228682	NM_005269.2	508	Caa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	226	342	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0008934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	438	261	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294088	1294088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	245	380	0	ENST00000310581.5:c.913G>A	p.Ala305Thr	p.A305T	ENST00000310581	NM_198253.2	305	Gcg/Acg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143033	30143033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			287	609	548	1	ENST00000389048.3:c.493C>A	p.Leu165Met	p.L165M	ENST00000389048	NM_004304.4	165	Ctg/Atg					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180030245	180030245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	358	529	0	ENST00000261937.6:c.4039G>A	p.Asp1347Asn	p.D1347N	ENST00000261937	NM_182925.4	1347	Gac/Aac					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151873858	151873858	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			536	179	400	0	ENST00000262189.6:c.8680A>T	p.Ile2894Phe	p.I2894F	ENST00000262189	NM_170606.2	2894	Att/Ttt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151917699	151917699	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			115	30	79	0	ENST00000262189.6:c.3621G>T	p.Lys1207Asn	p.K1207N	ENST00000262189	NM_170606.2	1207	aaG/aaT					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95570395	95570395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			262	130	189	0	ENST00000343455.3:c.3338C>T	p.Ser1113Phe	p.S1113F	ENST00000343455	NM_177438.2	1113	tCc/tTc					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78796921	78796921	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			691	422	313	1	ENST00000306801.3:c.1034G>C	p.Ser345Thr	p.S345T	ENST00000306801	NM_020761.2	345	aGt/aCt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11188175	11188175	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			625	122	257	0	ENST00000361445.4:c.5919C>G	p.Ile1973Met	p.I1973M	ENST00000361445	NM_004958.3	1973	atC/atG					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61145334	61145334	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			658	107	196	0	ENST00000295025.8:c.544A>C	p.Asn182His	p.N182H	ENST00000295025	NM_002908.2	182	Aat/Cat					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187542108	187542108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			252	111	217	0	ENST00000441802.2:c.5632G>A	p.Val1878Met	p.V1878M	ENST00000441802	NM_005245.3	1878	Gtg/Atg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151917610	151917610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			141	44	159	0	ENST00000262189.6:c.3710G>A	p.Arg1237Gln	p.R1237Q	ENST00000262189	NM_170606.2	1237	cGa/cAa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151917730	151917730	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			90	18	53	0	ENST00000262189.6:c.3590G>C	p.Arg1197Thr	p.R1197T	ENST00000262189	NM_170606.2	1197	aGa/aCa					NEWRECORD																																																																									
XRCC2	0	MSKCC	GRCh37	7	152346430	152346430	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			520	222	404	0	ENST00000359321.1:c.140A>G	p.His47Arg	p.H47R	ENST00000359321	NM_005431.1	47	cAt/cGt					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139401198	139401198	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			582	182	401	0	ENST00000277541.6:c.3871T>G	p.Phe1291Val	p.F1291V	ENST00000277541	NM_017617.3	1291	Ttc/Gtc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3831272	3831272	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			755	127	274	0	ENST00000262367.5:c.1609A>C	p.Thr537Pro	p.T537P	ENST00000262367	NM_004380.2	537	Aca/Cca					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110249707	110249709	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0001047-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			672	42	333	0	ENST00000374672.4:c.966_968delGGA	p.Glu323del	p.E323del	ENST00000374672	NM_004235.4	322	gaGGAa/gaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	121	340	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936393		P-0004796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	106	355	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	107	447	0	ENST00000269305.4:c.706T>G	p.Tyr236Asp	p.Y236D	ENST00000269305	NM_001126112.2	236	Tac/Gac					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100126	27100126	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	259	546	0	ENST00000324856.7:c.3922A>C	p.Asn1308His	p.N1308H	ENST00000324856	NM_006015.4	1308	Aat/Cat					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57750513	57750513	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	236	528	0	ENST00000274289.3:c.1955C>G	p.Ser652Cys	p.S652C	ENST00000274289	NM_006622.3	652	tCt/tGt					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6038873	6038873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	255	469	1	ENST00000265849.7:c.571T>C	p.Tyr191His	p.Y191H	ENST00000265849	NM_000535.5	191	Tac/Cac					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139440194	139440194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	196	146	0	ENST00000277541.6:c.45del	p.Ala16ArgfsTer17	p.A16Rfs*17	ENST00000277541	NM_017617.3	15	ccC/cc					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	481	685	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993182	72993182	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	362	1049	0	ENST00000268489.5:c.863A>C	p.Lys288Thr	p.K288T	ENST00000268489	NM_006885.3	288	aAa/aCa					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20159751	20159751	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	247	461	4	ENST00000379607.5:c.8A>T	p.Lys3Met	p.K3M	ENST00000379607	NM_001412.3	3	aAg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	310	353	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32906916	32906919	+	frameshift_variant	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs80359279		P-0008215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	57	213	0	ENST00000380152.3:c.1310_1313delAAGA	p.Lys437IlefsTer22	p.K437Ifs*22	ENST00000380152		434	aAAAGa/aa					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20483132	20483132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1691	131	359	1	ENST00000346618.3:c.865G>A	p.Glu289Lys	p.E289K	ENST00000346618	NM_001949.4	289	Gag/Aag					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162206921	162206921	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	70	228	0	ENST00000366898.1:c.754C>T	p.Gln252Ter	p.Q252*	ENST00000366898	NM_004562.2	252	Cag/Tag					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55223597	55223597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	32	284	1	ENST00000275493.2:c.964G>A	p.Gly322Ser	p.G322S	ENST00000275493	NM_005228.3	322	Ggc/Agc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151882690	151882690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	60	159	0	ENST00000262189.6:c.5035G>T	p.Ala1679Ser	p.A1679S	ENST00000262189	NM_170606.2	1679	Gcc/Tcc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	48	255	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	126	474	1	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692886	89692886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	42	232	0	ENST00000371953.3:c.370T>A	p.Cys124Ser	p.C124S	ENST00000371953	NM_000314.4	124	Tgt/Agt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191489	10191489	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	100	418	2	ENST00000256474.2:c.482G>T	p.Arg161Leu	p.R161L	ENST00000256474	NM_000551.3	161	cGa/cTa					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063320	67063320	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	76	240	1	ENST00000412916.2:c.10G>T	p.Val4Phe	p.V4F	ENST00000412916		4	Gtc/Ttc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53227948	53227948	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	455	367	2	ENST00000375401.3:c.2366G>A	p.Arg789His	p.R789H	ENST00000375401	NM_004187.3	789	cGc/cAc					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0009557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			26	37	123	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			23	132	363	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206649694	206649694	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	128	351	0	ENST00000367120.3:c.529G>C	p.Glu177Gln	p.E177Q	ENST00000367120	NM_014002.3	177	Gag/Cag					NEWRECORD																																																																									
HIST1H3E	0	MSKCC	GRCh37	6	26225611	26225611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	121	1491	0	ENST00000360408.1:c.229C>G	p.Gln77Glu	p.Q77E	ENST00000360408	NM_003532.2	77	Cag/Gag					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123211833	123211833	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	93	922	0	ENST00000218089.9:c.2700C>G	p.Ile900Met	p.I900M	ENST00000218089	NM_001042749.1	900	atC/atG					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16082466	16082466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	125	320	0	ENST00000281043.3:c.280G>A	p.Glu94Lys	p.E94K	ENST00000281043	NM_005378.4	94	Gag/Aag					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99185084	99185084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	906	482	0	ENST00000074304.5:c.2486G>T	p.Arg829Leu	p.R829L	ENST00000074304	NM_001134224.1	829	cGg/cTg					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55970852	55970852	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	306	516	0	ENST00000263923.4:c.1945A>T	p.Thr649Ser	p.T649S	ENST00000263923	NM_002253.2	649	Acc/Tcc					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152129090	152129090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	326	419	0	ENST00000206249.3:c.43C>G	p.Leu15Val	p.L15V	ENST00000206249	NM_000125.3	15	Ctg/Gtg					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57861978	57861978	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	1179	569	0	ENST00000228682.2:c.1279A>T	p.Ser427Cys	p.S427C	ENST00000228682	NM_005269.2	427	Agc/Tgc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48951110	48951110	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	718	438	0	ENST00000267163.4:c.1272C>A	p.Tyr424Ter	p.Y424*	ENST00000267163	NM_000321.2	424	taC/taA					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678351	88678351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	313	454	1	ENST00000360948.2:c.1185C>A	p.Phe395Leu	p.F395L	ENST00000360948	NM_001012338.2	395	ttC/ttA					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9943790	9943790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	165	231	0	ENST00000330684.3:c.1151G>A	p.Ser384Asn	p.S384N	ENST00000330684	NM_001134407.1	384	aGc/aAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579329	7579329	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	775	421	0	ENST00000269305.4:c.358A>T	p.Lys120Ter	p.K120*	ENST00000269305	NM_001126112.2	120	Aag/Tag					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78936781	78936782	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0006630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	582	414	3	ENST00000306801.3:c.3864_3865del	p.Asn1288LysfsTer51	p.N1288Kfs*51	ENST00000306801	NM_020761.2	1288	aAC/a					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	129	396	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			138	204	390	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37879885	37879885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			224	136	513	0	ENST00000269571.5:c.2180G>C	p.Gly727Ala	p.G727A	ENST00000269571		727	gGa/gCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			300	166	566	0	ENST00000269305.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000269305	NM_001126112.2	274	Gtt/Ctt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911628	32911628	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			337	117	576	0	ENST00000380152.3:c.3136G>C	p.Glu1046Gln	p.E1046Q	ENST00000380152		1046	Gaa/Caa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023676	27023676	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			320	120	385	0	ENST00000324856.7:c.782C>A	p.Ser261Ter	p.S261*	ENST00000324856	NM_006015.4	261	tCg/tAg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27089768	27089768	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			170	62	136	0	ENST00000324856.7:c.2724C>G	p.Ile908Met	p.I908M	ENST00000324856	NM_006015.4	908	atC/atG					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189612091	189612091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			576	70	397	0	ENST00000264731.3:c.1843C>T	p.His615Tyr	p.H615Y	ENST00000264731	NM_003722.4	615	Cat/Tat					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	39074439	39074439	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			335	106	271	0	ENST00000357387.3:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000357387	NM_152756.3	14	cGa/cAa					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176522671	176522671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			906	156	510	1	ENST00000292408.4:c.1768G>T	p.Val590Phe	p.V590F	ENST00000292408	NM_213647.1	590	Gtc/Ttc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32178623	32178623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			373	139	446	0	ENST00000375023.3:c.2771G>T	p.Gly924Val	p.G924V	ENST00000375023	NM_004557.3	924	gGc/gTc					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123276944	123276944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			368	108	357	0	ENST00000358487.5:c.973G>A	p.Glu325Lys	p.E325K	ENST00000358487	NM_000141.4	325	Gag/Aag					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007725	45007725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			404	60	456	0	ENST00000558401.1:c.172G>C	p.Asp58His	p.D58H	ENST00000558401	NM_004048.2	58	Gac/Cac					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007752	45007752	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			410	69	461	0	ENST00000558401.1:c.199G>C	p.Glu67Gln	p.E67Q	ENST00000558401	NM_004048.2	67	Gaa/Caa					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59763201	59763201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			355	51	403	0	ENST00000259008.2:c.2901G>C	p.Glu967Asp	p.E967D	ENST00000259008	NM_032043.2	967	gaG/gaC					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76875940	76875940	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004909-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			342	124	553	0	ENST00000373344.5:c.5195C>T	p.Ser1732Phe	p.S1732F	ENST00000373344	NM_000489.3	1732	tCt/tTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	206	315	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89815102	89815102	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	120	588	0	ENST00000389301.3:c.3313T>A	p.Cys1105Ser	p.C1105S	ENST00000389301	NM_000135.2	1105	Tgc/Agc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0006205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	203	399	0	ENST00000269305.4:c.377A>C	p.Tyr126Ser	p.Y126S	ENST00000269305	NM_001126112.2	126	tAc/tCc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	99	422	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39755362	39755362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	94	528	0	ENST00000288319.7:c.1403C>T	p.Thr468Ile	p.T468I	ENST00000288319	NM_182918.3	468	aCc/aTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0005758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	33	484	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	49	394	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117724427	117724427	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	32	483	1	ENST00000368508.3:c.452C>T	p.Pro151Leu	p.P151L	ENST00000368508	NM_002944.2	151	cCg/cTg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573586	48573586	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	48	469	0	ENST00000342988.3:c.170T>C	p.Leu57Ser	p.L57S	ENST00000342988	NM_005359.5	57	tTa/tCa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939069	76939069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	42	516	0	ENST00000373344.5:c.1679C>T	p.Ser560Phe	p.S560F	ENST00000373344	NM_000489.3	560	tCt/tTt					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589535	67589535	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	309	289	0	ENST00000274335.5:c.1300-2A>T		p.X434_splice	ENST00000274335		434						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174751	112174753	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0005806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	31	477	2	ENST00000257430.4:c.3468_3470delAGA	p.Glu1157del	p.E1157del	ENST00000257430	NM_000038.5	1154	GAA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578488	7578488	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	395	478	0	ENST00000269305.4:c.442del	p.Asp148IlefsTer22	p.D148Ifs*22	ENST00000269305	NM_001126112.2	148	Gat/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0005962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	19	422	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0005962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	20	312	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249020	55249020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	120	369	0	ENST00000275493.2:c.2318A>G	p.His773Arg	p.H773R	ENST00000275493	NM_005228.3	773	cAc/cGc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878033	151878033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	62	333	0	ENST00000262189.6:c.6912G>A	p.Met2304Ile	p.M2304I	ENST00000262189	NM_170606.2	2304	atG/atA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	112	213	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57755527	57755527	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	64	121	0	ENST00000274289.3:c.260T>A	p.Val87Glu	p.V87E	ENST00000274289	NM_006622.3	87	gTg/gAg					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67198852	67198852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	75	192	0	ENST00000312629.5:c.323G>C	p.Arg108Pro	p.R108P	ENST00000312629	NM_003952.2	108	cGc/cCc					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95590599	95590599	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	59	317	0	ENST00000343455.3:c.1310C>T	p.Pro437Leu	p.P437L	ENST00000343455	NM_177438.2	437	cCt/cTt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1226618	1226618	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	46	154	0	ENST00000326873.7:c.1274G>C	p.Arg425Pro	p.R425P	ENST00000326873	NM_000455.4	425	cGc/cCc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47028898	47028898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	71	139	0	ENST00000329236.7:c.201+1G>T		p.X67_splice	ENST00000329236	NM_001204466.1	67						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	31	364	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941648	48941648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	74	344	0	ENST00000267163.4:c.958C>T	p.Arg320Ter	p.R320*	ENST00000267163	NM_000321.2	320	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	23	572	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30732918	30732918	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	34	389	0	ENST00000359013.4:c.1606C>T	p.Gln536Ter	p.Q536*	ENST00000359013	NM_001024847.2	536	Cag/Tag					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974714	21974714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	20	261	0	ENST00000304494.5:c.113C>A	p.Pro38His	p.P38H	ENST00000304494	NM_000077.4	38	cCc/cAc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974714	21974714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	20	261	0	ENST00000304494.5:c.113C>A	p.Pro38His	p.P38H	ENST00000304494	NM_000077.4	38	cCc/cAc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	143	223	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148507497	148507497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	173	339	0	ENST00000320356.2:c.1957C>G	p.Gln653Glu	p.Q653E	ENST00000320356	NM_004456.4	653	Caa/Gaa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44913136	44913136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	452	424	0	ENST00000377967.4:c.811C>T	p.Gln271Ter	p.Q271*	ENST00000377967	NM_021140.2	271	Cag/Tag					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5069931	5069931	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	331	285	0	ENST00000381652.3:c.1520C>G	p.Ser507Ter	p.S507*	ENST00000381652	NM_004972.3	507	tCa/tGa					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89825063	89825063	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	318	520	0	ENST00000389301.3:c.2903C>T	p.Ser968Leu	p.S968L	ENST00000389301	NM_000135.2	968	tCg/tTg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162737036	162737036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	318	484	0	ENST00000367921.3:c.1180G>A	p.Asp394Asn	p.D394N	ENST00000367921	NM_006182.2	394	Gat/Aat					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162745985	162745985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	259	493	0	ENST00000367921.3:c.2108C>G	p.Ser703Cys	p.S703C	ENST00000367921	NM_006182.2	703	tCt/tGt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178937054	178937054	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	125	243	0	ENST00000263967.3:c.1735G>A	p.Glu579Lys	p.E579K	ENST00000263967	NM_006218.2	579	Gaa/Aaa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106193871	106193871	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	267	481	1	ENST00000380013.4:c.4333C>T	p.Gln1445Ter	p.Q1445*	ENST00000380013	NM_001127208.2	1445	Cag/Tag					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149509379	149509379	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145823245		P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	265	423	1	ENST00000261799.4:c.1520G>A	p.Arg507His	p.R507H	ENST00000261799	NM_002609.3	507	cGc/cAc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117641162	117641162	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	469	796	0	ENST00000368508.3:c.5809C>G	p.Leu1937Val	p.L1937V	ENST00000368508	NM_002944.2	1937	Ctt/Gtt					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157522271	157522271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	260	445	0	ENST00000346085.5:c.4543C>G	p.His1515Asp	p.H1515D	ENST00000346085	NM_020732.3	1515	Cac/Gac					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6441961	6441961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	203	386	0	ENST00000356142.4:c.520C>G	p.Leu174Val	p.L174V	ENST00000356142	NM_018890.3	174	Ctg/Gtg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139413123	139413123	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	470	603	1	ENST00000277541.6:c.1019C>A	p.Ala340Asp	p.A340D	ENST00000277541	NM_017617.3	340	gCc/gAc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139417620	139417620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	357	463	0	ENST00000277541.6:c.424G>A	p.Asp142Asn	p.D142N	ENST00000277541	NM_017617.3	142	Gac/Aac					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123256216	123256216	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	245	426	0	ENST00000358487.5:c.1693G>C	p.Glu565Gln	p.E565Q	ENST00000358487	NM_000141.4	565	Gag/Cag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49423006	49423006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	251	399	0	ENST00000301067.7:c.14089G>A	p.Glu4697Lys	p.E4697K	ENST00000301067	NM_003482.3	4697	Gag/Aag					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28622508	28622508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	313	476	1	ENST00000241453.7:c.1109C>T	p.Ser370Phe	p.S370F	ENST00000241453	NM_004119.2	370	tCt/tTt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72845664	72845664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	404	668	1	ENST00000268489.5:c.3676C>T	p.Pro1226Ser	p.P1226S	ENST00000268489	NM_006885.3	1226	Ccc/Tcc					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618676	37618676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	250	526	1	ENST00000447079.4:c.352C>T	p.Arg118Cys	p.R118C	ENST00000447079	NM_015083.1	118	Cgt/Tgt					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36030079	36030079	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	253	424	0	ENST00000358208.4:c.1114C>G	p.Gln372Glu	p.Q372E	ENST00000358208		372	Cag/Gag					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66905924	66905924	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	379	321	0	ENST00000374690.3:c.1841C>G	p.Ser614Cys	p.S614C	ENST00000374690	NM_000044.3	614	tCt/tGt					NEWRECORD																																																																									
SRSF2	0	MSKCC	GRCh37	17	74732271	74732272	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1205	488	790	1	ENST00000392485.2:c.637_638delinsTT	p.Pro213Phe	p.P213F	ENST00000392485	NM_003016.4	213	CCt/TTt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	26	724	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	438	523	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17120481	17120481	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	379	451	0	ENST00000285071.4:c.1078T>A	p.Ser360Thr	p.S360T	ENST00000285071	NM_144997.5	360	Tct/Act					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176085809	176085827	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATAATACTACTGCAAAATG	ATAATACTACTGCAAAATG	-			P-0006703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1068	530	558	0	ENST00000367669.3:c.969-10_977del		p.X323_splice	ENST00000367669	NM_022457.5	323						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	172	628	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	103	885	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198270192	198270192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	67	576	0	ENST00000335508.6:c.1244T>C	p.Leu415Pro	p.L415P	ENST00000335508	NM_012433.2	415	cTt/cCt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106904	27106904	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	35	735	1	ENST00000324856.7:c.6516del	p.Asn2173ThrfsTer27	p.N2173Tfs*27	ENST00000324856	NM_006015.4	2172	gCc/gc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32190321	32190321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	21	233	0	ENST00000375023.3:c.418C>T	p.Arg140Cys	p.R140C	ENST00000375023	NM_004557.3	140	Cgc/Tgc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242478	55242478	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	94	338	0	ENST00000275493.2:c.2248G>C	p.Ala750Pro	p.A750P	ENST00000275493	NM_005228.3	750	Gca/Cca					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729508	41729508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	173	732	2	ENST00000242208.4:c.1021G>A	p.Ala341Thr	p.A341T	ENST00000242208	NM_002192.2	341	Gct/Act					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145739837	145739837	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	45	459	0	ENST00000428558.2:c.1693G>C	p.Val565Leu	p.V565L	ENST00000428558	NM_004260.3	565	Gtc/Ctc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72830793	72830793	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	103	726	0	ENST00000268489.5:c.5788T>C	p.Ser1930Pro	p.S1930P	ENST00000268489	NM_006885.3	1930	Tcc/Ccc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17953916	17953916	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	47	375	0	ENST00000458235.1:c.486T>A	p.Cys162Ter	p.C162*	ENST00000458235	NM_000215.3	162	tgT/tgA					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242466	55242478	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAG	GAATTAAGAGAAG	ATTC			P-0009042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	92	350	0	ENST00000275493.2:c.2236_2248delinsATTC	p.Glu746_Ala750delinsIlePro	p.E746_A750delinsIP	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGca/ATTCca					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	37	364	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023544	31023544	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116112525		P-0009663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	48	399	1	ENST00000375687.4:c.3029C>T	p.Thr1010Met	p.T1010M	ENST00000375687	NM_015338.5	1010	aCg/aTg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2962846	2962846	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	64	441	2	ENST00000396946.4:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000396946	NM_032415.4	688	Cga/Tga					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8340450	8340450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200354236		P-0009663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	34	491	0	ENST00000356435.5:c.5146G>A	p.Ala1716Thr	p.A1716T	ENST00000356435		1716	Gct/Act					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	220	410	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	135	286	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95574277	95574277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008668-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	71	402	0	ENST00000343455.3:c.2590G>T	p.Ala864Ser	p.A864S	ENST00000343455	NM_177438.2	864	Gca/Tca					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	731	366	1	ENST00000256078.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	61	Caa/Aaa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100998	27100998	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	336	372	0	ENST00000324856.7:c.4280del	p.Val1427AspfsTer54	p.V1427Dfs*54	ENST00000324856	NM_006015.4	1427	gTa/ga					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36259178	36259178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	447	475	0	ENST00000300305.3:c.313C>T	p.His105Tyr	p.H105Y	ENST00000300305		105	Cac/Tac					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69990456	69990456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	63	462	0	ENST00000352241.4:c.736G>A	p.Asp246Asn	p.D246N	ENST00000352241	NM_198159.2	246	Gat/Aat					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142277552	142277552	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	71	423	0	ENST00000350721.4:c.1799A>G	p.Tyr600Cys	p.Y600C	ENST00000350721	NM_001184.3	600	tAt/tGt					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	398827	398827	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	88	519	0	ENST00000380956.4:c.638-1G>T		p.X213_splice	ENST00000380956	NM_001195286.1	213						NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045182	47045182	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	83	256	0	ENST00000329236.7:c.2189A>T	p.Asp730Val	p.D730V	ENST00000329236	NM_001204466.1	730	gAc/gTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	87	329	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	121	442	1	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241711	55241711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	109	394	0	ENST00000275493.2:c.2159C>T	p.Ser720Phe	p.S720F	ENST00000275493	NM_005228.3	720	tCc/tTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	88	464	0	ENST00000269305.4:c.578A>C	p.His193Pro	p.H193P	ENST00000269305	NM_001126112.2	193	cAt/cCt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2040	77	701	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0009655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	1136	688	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	55	520	1	ENST00000269305.4:c.374C>A	p.Thr125Lys	p.T125K	ENST00000269305	NM_001126112.2	125	aCg/aAg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439796	52439796	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	125	652	0	ENST00000460680.1:c.916G>T	p.Glu306Ter	p.E306*	ENST00000460680	NM_004656.3	306	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	155	454	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120464875	120464875	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	217	157	0	ENST00000256646.2:c.5197G>T	p.Asp1733Tyr	p.D1733Y	ENST00000256646	NM_024408.3	1733	Gat/Tat					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23641217	23641217	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	47	263	0	ENST00000261584.4:c.2258G>T	p.Arg753Leu	p.R753L	ENST00000261584	NM_024675.3	753	cGa/cTa					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215593678	215593678	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008489-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	41	242	0	ENST00000260947.4:c.2056del	p.His686IlefsTer28	p.H686Ifs*28	ENST00000260947	NM_000465.2	686	Cat/at					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	682	269	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176518715	176518715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	115	180	1	ENST00000292408.4:c.633G>A	p.Met211Ile	p.M211I	ENST00000292408	NM_213647.1	211	atG/atA					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32421528	32421528	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	144	192	0	ENST00000332351.3:c.1064G>A	p.Arg355Lys	p.R355K	ENST00000332351	NM_024426.4	355	aGa/aAa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76940000	76940000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	543	213	0	ENST00000373344.5:c.748C>T	p.Arg250Ter	p.R250*	ENST00000373344	NM_000489.3	250	Cga/Tga					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8636739	8636739	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	294	186	1	ENST00000356435.5:c.170G>A	p.Trp57Ter	p.W57*	ENST00000356435		57	tGg/tAg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142268985	142268985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	363	330	0	ENST00000350721.4:c.2965C>T	p.Arg989Cys	p.R989C	ENST00000350721	NM_001184.3	989	Cgt/Tgt					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142217469	142217469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	298	299	0	ENST00000350721.4:c.5528C>T	p.Ser1843Phe	p.S1843F	ENST00000350721	NM_001184.3	1843	tCc/tTc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177763	112177763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	348	210	0	ENST00000257430.4:c.6472C>T	p.Pro2158Ser	p.P2158S	ENST00000257430	NM_000038.5	2158	Ccc/Tcc					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553525	106553525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	74	126	0	ENST00000369096.4:c.1490C>T	p.Ser497Phe	p.S497F	ENST00000369096	NM_001198.3	497	tCc/tTc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945123	151945123	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	33	133	0	ENST00000262189.6:c.2396A>T	p.Asn799Ile	p.N799I	ENST00000262189	NM_170606.2	799	aAt/aTt					NEWRECORD																																																																									
KMT2D	8085	MSKCC	GRCh37	12	49434955	49434955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	150	113	0	ENST00000301067.7:c.6598C>T	p.Pro2200Ser	p.P2200S	ENST00000301067	NM_003482.3	2200	Cct/Tct					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9624831	9624831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	166	248	0	ENST00000353224.5:c.146G>A	p.Arg49Lys	p.R49K	ENST00000353224	NM_177990.2	49	aGg/aAg					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187440271	187440272	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	149	157	0	ENST00000232014.4:c.2095_2096delinsTT	p.Pro699Phe	p.P699F	ENST00000232014	NM_001130845.1	699	CCt/TTt					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89349368	89349369	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	414	701	1	ENST00000301030.4:c.3581_3582delinsAA	p.Gly1194Glu	p.G1194E	ENST00000301030	NM_001256183.1	1194	gGG/gAA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	496	287	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40735470	40735470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	141	362	1	ENST00000373198.4:c.3403G>A	p.Val1135Met	p.V1135M	ENST00000373198	NM_133170.3	1135	Gtg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	192	347	0	ENST00000269305.4:c.395A>T	p.Lys132Met	p.K132M	ENST00000269305	NM_001126112.2	132	aAg/aTg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974658	21974895	+	splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	CTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCA	CTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCA	-			P-0006266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	110	427	0	ENST00000304494.5:c.-69_150+19del		p.X23_splice	ENST00000304494	NM_000077.4	23						NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974658	21974895	+	splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant	Splice_Site	DEL	CTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCA	CTGCAGACCCTCTACCCACCTGGATCGGCCTCCGACCGTAACTATTCGGTGCGTTGGGCAGCGCCCCCGCCTCCAGCAGCGCCCGCACCTCCTCTACCCGACCCCGGGCCGCGGCCGTGGCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCA	-			P-0006266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	110	427	0	ENST00000304494.5:c.-69_150+19del		p.X23_splice	ENST00000304494	NM_000077.4	23						NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	56	373	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2984019	2984019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	116	498	0	ENST00000396946.4:c.511G>T	p.Val171Leu	p.V171L	ENST00000396946	NM_032415.4	171	Gtg/Ttg					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248598	59248598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	110	514	0	ENST00000371222.2:c.145C>A	p.Leu49Met	p.L49M	ENST00000371222	NM_002228.3	49	Ctg/Atg					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226567767	226567767	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	159	518	0	ENST00000366794.5:c.1399A>C	p.Lys467Gln	p.K467Q	ENST00000366794	NM_001618.3	467	Aag/Cag					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143226639	143226639	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	64	394	1	ENST00000262992.4:c.475A>T	p.Lys159Ter	p.K159*	ENST00000262992	NM_001101669.1	159	Aag/Tag					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544661	65544661	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	115	513	0	ENST00000358664.4:c.265A>T	p.Lys89Ter	p.K89*	ENST00000358664	NM_002382.4	89	Aag/Tag					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15989709	15989709	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	94	405	0	ENST00000268712.3:c.3064G>T	p.Val1022Phe	p.V1022F	ENST00000268712	NM_006311.3	1022	Gtt/Ttt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70342661	70342661	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	71	593	0	ENST00000374080.3:c.1422C>A	p.Ser474Arg	p.S474R	ENST00000374080		474	agC/agA					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	111	513	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
SMO	6608	MSKCC	GRCh37	7	128852004	128852004	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	86	604	0	ENST00000249373.3:c.2081del	p.Pro694LeufsTer82	p.P694Lfs*82	ENST00000249373	NM_005631.4	692	caC/ca					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	98	509	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	51	335	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt					NEWRECORD																																																																									
TGFBR2	7048	MSKCC	GRCh37	3	30691872	30691873	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	75	480	0	ENST00000359013.4:c.457_458del	p.Lys153AlafsTer3	p.K153Afs*3	ENST00000359013	NM_001024847.2	150	gAA/g					NEWRECORD																																																																									
NBN	4683	MSKCC	GRCh37	8	90967512	90967512	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1349928568		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	145	484	5	ENST00000265433.3:c.1396del	p.Arg466GlyfsTer18	p.R466Gfs*18	ENST00000265433	NM_002485.4	466	Agg/gg					NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66509085	66509085	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	97	519	2	ENST00000273854.3:c.242del	p.Asn81MetfsTer24	p.N81Mfs*24	ENST00000273854	NM_004439.5	81	aAt/at					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610083	81610083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	30	513	0	ENST00000298171.2:c.1681A>C	p.Ser561Arg	p.S561R	ENST00000298171	NM_000369.2	561	Agt/Cgt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604775	48604775	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	116	517	0	ENST00000342988.3:c.1597C>A	p.Leu533Ile	p.L533I	ENST00000342988	NM_005359.5	533	Ctc/Atc					NEWRECORD																																																																									
MEN1	4221	MSKCC	GRCh37	11	64572093	64572093	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs794728642		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	122	789	6	ENST00000337652.1:c.1561del	p.Arg521GlyfsTer43	p.R521Gfs*43	ENST00000337652	NM_130803.2	521	Cgg/gg					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157522454	157522454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	106	509	0	ENST00000346085.5:c.4726C>T	p.Pro1576Ser	p.P1576S	ENST00000346085	NM_020732.3	1576	Ccg/Tcg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101655	27101655	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	75	520	0	ENST00000324856.7:c.4937T>G	p.Val1646Gly	p.V1646G	ENST00000324856	NM_006015.4	1646	gTt/gGt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	113	395	0	ENST00000359013.4:c.1657C>A	p.Arg553Ser	p.R553S	ENST00000359013	NM_001024847.2	553	Cgt/Agt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165917	47165917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	158	704	0	ENST00000409792.3:c.209G>A	p.Arg70Gln	p.R70Q	ENST00000409792	NM_014159.6	70	cGa/cAa					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49939821	49939821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	211	816	1	ENST00000296474.3:c.1222C>T	p.Pro408Ser	p.P408S	ENST00000296474	NM_002447.2	408	Ccc/Tcc					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138664795	138664795	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113777439		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	35	110	0	ENST00000330315.3:c.770C>T	p.Pro257Leu	p.P257L	ENST00000330315	NM_023067.3	257	cCg/cTg					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41747937	41747937	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138545772		P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	71	373	0	ENST00000226382.2:c.832G>A	p.Gly278Ser	p.G278S	ENST00000226382	NM_003924.3	278	Ggc/Agc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187534340	187534340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	147	557	0	ENST00000441802.2:c.9386C>T	p.Pro3129Leu	p.P3129L	ENST00000441802	NM_005245.3	3129	cCt/cTt					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	39074216	39074216	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	77	340	0	ENST00000357387.3:c.94C>T	p.Arg32Ter	p.R32*	ENST00000357387	NM_152756.3	32	Cga/Tga					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20402690	20402690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	98	436	0	ENST00000346618.3:c.227G>T	p.Ser76Ile	p.S76I	ENST00000346618	NM_001949.4	76	aGc/aTc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32168928	32168928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	126	744	0	ENST00000375023.3:c.4105C>T	p.Pro1369Ser	p.P1369S	ENST00000375023	NM_004557.3	1369	Ccc/Tcc					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759406	133759406	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	196	883	3	ENST00000318560.5:c.1729C>T	p.Arg577Ter	p.R577*	ENST00000318560	NM_005157.4	577	Cga/Tga					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110434595	110434595	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	73	357	0	ENST00000375856.3:c.3806A>C	p.Gln1269Pro	p.Q1269P	ENST00000375856	NM_003749.2	1269	cAg/cCg					NEWRECORD																																																																									
PDPK1	0	MSKCC	GRCh37	16	2647720	2647720	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	135	683	2	ENST00000342085.4:c.1623G>T	p.Glu541Asp	p.E541D	ENST00000342085	NM_002613.4	541	gaG/gaT					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37884277	37884277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	88	462	0	ENST00000269571.5:c.3748G>A	p.Gly1250Ser	p.G1250S	ENST00000269571		1250	Ggt/Agt					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56438279	56438279	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	83	457	0	ENST00000407977.2:c.714G>A	p.Trp238Ter	p.W238*	ENST00000407977		238	tgG/tgA					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554617	63554617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	66	375	2	ENST00000307078.5:c.122G>A	p.Gly41Asp	p.G41D	ENST00000307078	NM_004655.3	41	gGc/gAc					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117726	70117726	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	123	787	0	ENST00000245479.2:c.194A>C	p.Glu65Ala	p.E65A	ENST00000245479	NM_000346.3	65	gAg/gCg					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10265302	10265302	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	86	486	2	ENST00000340748.4:c.1744C>T	p.Arg582Trp	p.R582W	ENST00000340748		582	Cgg/Tgg					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17953390	17953390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	70	447	0	ENST00000458235.1:c.596G>A	p.Arg199His	p.R199H	ENST00000458235	NM_000215.3	199	cGc/cAc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42798822	42798822	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	109	585	4	ENST00000575354.2:c.4394G>A	p.Arg1465His	p.R1465H	ENST00000575354	NM_015125.3	1465	cGc/cAc					NEWRECORD																																																																									
BCL2L1	0	MSKCC	GRCh37	20	30309542	30309542	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	159	707	0	ENST00000307677.4:c.480G>T	p.Gln160His	p.Q160H	ENST00000307677	NM_138578.1	160	caG/caT					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53222717	53222717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	90	321	0	ENST00000375401.3:c.4219del	p.Asp1407ThrfsTer5	p.D1407Tfs*5	ENST00000375401	NM_004187.3	1407	Gac/ac					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161969885	161969885	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	52	434	0	ENST00000366898.1:c.1083+1del		p.X361_splice	ENST00000366898	NM_004562.2	361						NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575133	48575133	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	163	643	1	ENST00000342988.3:c.330del	p.Lys110AsnfsTer12	p.K110Nfs*12	ENST00000342988	NM_005359.5	109	ctA/ct					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20480133	20480133	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	124	664	0	ENST00000346618.3:c.454del	p.Thr152ProfsTer43	p.T152Pfs*43	ENST00000346618	NM_001949.4	150	ttA/tt					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46265049	46265049	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	81	1066	0	ENST00000371998.3:c.1924del	p.Leu642Ter	p.L642*	ENST00000371998		640	tCc/tc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	335	722	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	181	479	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	107	457	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175761	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	95	386	0	ENST00000257430.4:c.4473delT	p.Phe1491LeufsTer16	p.F1491Lfs*16	ENST00000257430	NM_000038.5	1490	caT/ca					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2959241	2959241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	159	391	1	ENST00000396946.4:c.2275C>T	p.Arg759Trp	p.R759W	ENST00000396946	NM_032415.4	759	Cgg/Tgg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10274192	10274192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	44	314	0	ENST00000330684.3:c.77C>T	p.Ala26Val	p.A26V	ENST00000330684	NM_001134407.1	26	gCg/gTg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117702	70117711	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCCGATCT	AGCCCGATCT	-			P-0005439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	480	724	0	ENST00000245479.2:c.170_179del	p.Glu57GlyfsTer50	p.E57Gfs*50	ENST00000245479	NM_000346.3	57	gAGCCCGATCTg/gg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	105	182	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	38	310	0	ENST00000342988.3:c.1055G>A	p.Gly352Glu	p.G352E	ENST00000342988	NM_005359.5	352	gGa/gAa					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	283	337	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	314	361	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	603	480	1	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105550	27105550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	448	415	0	ENST00000324856.7:c.5161C>T	p.Arg1721Ter	p.R1721*	ENST00000324856	NM_006015.4	1721	Cga/Tga					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11269484	11269484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	271	396	0	ENST00000361445.4:c.3686C>T	p.Pro1229Leu	p.P1229L	ENST00000361445	NM_004958.3	1229	cCt/cTt					NEWRECORD																																																																									
CXCR4	0	MSKCC	GRCh37	2	136872710	136872710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	363	612	0	ENST00000241393.3:c.788C>T	p.Ser263Phe	p.S263F	ENST00000241393	NM_003467.2	263	tCc/tTc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212285320	212285320	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	169	306	0	ENST00000342788.4:c.2981A>G	p.Lys994Arg	p.K994R	ENST00000342788	NM_005235.2	994	aAg/aGg					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128204933	128204933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	526	545	1	ENST00000341105.2:c.508C>T	p.Leu170Phe	p.L170F	ENST00000341105	NM_032638.4	170	Ctt/Ttt					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149515296	149515296	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	251	413	0	ENST00000261799.4:c.186G>A	p.Trp62Ter	p.W62*	ENST00000261799	NM_002609.3	62	tgG/tgA					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93965562	93965562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	319	538	0	ENST00000369303.4:c.2366C>T	p.Ala789Val	p.A789V	ENST00000369303	NM_004440.3	789	gCt/gTt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117686321	117686321	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	225	301	0	ENST00000368508.3:c.3020G>A	p.Gly1007Glu	p.G1007E	ENST00000368508	NM_002944.2	1007	gGa/gAa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151860679	151860679	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	435	466	0	ENST00000262189.6:c.9983G>A	p.Arg3328Lys	p.R3328K	ENST00000262189	NM_170606.2	3328	aGa/aAa					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67202099	67202099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	445	445	0	ENST00000312629.5:c.1202G>A	p.Gly401Asp	p.G401D	ENST00000312629	NM_003952.2	401	gGc/gAc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133202896	133202896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	194	280	0	ENST00000320574.5:c.6338C>T	p.Ser2113Phe	p.S2113F	ENST00000320574	NM_006231.2	2113	tCc/tTc					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986535	36986535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	560	373	3	ENST00000354822.5:c.1154C>T	p.Ser385Leu	p.S385L	ENST00000354822	NM_001079668.2	385	tCg/tTg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42035146	42035146	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	461	554	0	ENST00000219905.7:c.4988C>T	p.Thr1663Ile	p.T1663I	ENST00000219905	NM_001164273.1	1663	aCc/aTc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916226	9916226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	220	397	0	ENST00000330684.3:c.2063G>A	p.Gly688Glu	p.G688E	ENST00000330684	NM_001134407.1	688	gGa/gAa					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435377	56435377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	413	339	0	ENST00000407977.2:c.1760C>T	p.Pro587Leu	p.P587L	ENST00000407977		587	cCc/cTc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47040645	47040645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	378	450	0	ENST00000329236.7:c.1046C>T	p.Thr349Ile	p.T349I	ENST00000329236	NM_001204466.1	349	aCc/aTc					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63413117	63413117	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	472	450	1	ENST00000330258.3:c.50C>T	p.Ser17Phe	p.S17F	ENST00000330258	NM_152424.3	17	tCt/tTt					NEWRECORD																																																																									
XIAP	0	MSKCC	GRCh37	X	123019807	123019807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	240	369	0	ENST00000355640.3:c.295G>A	p.Glu99Lys	p.E99K	ENST00000355640		99	Gaa/Aaa					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	181	206	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974715	21974732	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCCCCCGCCTCCA	GCAGCGCCCCCGCCTCCA	-			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	181	206	0	ENST00000304494.5:c.95_112delTGGAGGCGGGGGCGCTGC	p.Leu32_Leu37del	p.L32_L37del	ENST00000304494	NM_000077.4	32	cTGGAGGCGGGGGCGCTGCcc/ccc					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8073288	8073289	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	479	551	0	ENST00000377482.5:c.1370_1371delinsTT	p.Ser457Phe	p.S457F	ENST00000377482	NM_018948.3	457	tCC/tTT					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118353210	118353211	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0004914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	308	262	0	ENST00000534358.1:c.4086_4086+1delinsAA		p.X1362_splice	ENST00000534358	NM_005933.3	1362						NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98209714	98209714	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	259	439	0	ENST00000331920.6:c.3824G>C	p.Arg1275Thr	p.R1275T	ENST00000331920	NM_000264.3	1275	aGg/aCg					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	396401	396401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	78	569	0	ENST00000262320.3:c.625G>C	p.Glu209Gln	p.E209Q	ENST00000262320	NM_003502.3	209	Gaa/Caa					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40375538	40375538	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1482	219	979	0	ENST00000293328.3:c.412T>C	p.Ser138Pro	p.S138P	ENST00000293328	NM_012448.3	138	Tcc/Ccc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151855575	151856039	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCGTGTCCTTGAATTGTTTGTTTTTTTTTTGTTTTTTTTTTTGAGACACAGTCTCATTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCTGCCATCCAGGCTCAAGCAATTCTCGTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGGCGTGTACCACCACGCCCAGTAAATGTTTGTATTTTTCGTAGAGATGAGGTTTTGCCATGTTGGCTAAGCTCATCTAGAACTCATGCCTCAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCCCCCAGCCTATATCCTTGACTTTTAAAAGAGGCTGCTCTAAATGACTCACCCTCACCTGTTTCAAGTGGGTAAACGTGTCAGTGCTAGAGTACATAGCTTGTTTCTCCTCTTCGTCCTTTTTCCTTTTCTTTGAGCGAGGTGCTGCTT	TCTCGTGTCCTTGAATTGTTTGTTTTTTTTTTGTTTTTTTTTTTGAGACACAGTCTCATTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCTGCCATCCAGGCTCAAGCAATTCTCGTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGGCGTGTACCACCACGCCCAGTAAATGTTTGTATTTTTCGTAGAGATGAGGTTTTGCCATGTTGGCTAAGCTCATCTAGAACTCATGCCTCAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCCCCCAGCCTATATCCTTGACTTTTAAAAGAGGCTGCTCTAAATGACTCACCCTCACCTGTTTCAAGTGGGTAAACGTGTCAGTGCTAGAGTACATAGCTTGTTTCTCCTCTTCGTCCTTTTTCCTTTTCTTTGAGCGAGGTGCTGCTT	-			P-0007040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			0	61	0	0	ENST00000262189.6:c.11579_11670+373del		p.X3860_splice	ENST00000262189	NM_170606.2	3860						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579371	7579390	+	frameshift_variant	Frame_Shift_Del	DEL	TGCCCTGGTAGGTTTTCTGG	TGCCCTGGTAGGTTTTCTGG	-			P-0007040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	198	575	0	ENST00000269305.4:c.297_316del	p.Gln100LeufsTer42	p.Q100Lfs*42	ENST00000269305	NM_001126112.2	99	tcCCAGAAAACCTACCAGGGCAgc/tcgc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32907159	32907159	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	160	513	0	ENST00000380152.3:c.1544del	p.Thr515IlefsTer10	p.T515Ifs*10	ENST00000380152		515	aCt/at					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188217	32188217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009409-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	27	313	0	ENST00000375023.3:c.1124G>A	p.Gly375Asp	p.G375D	ENST00000375023	NM_004557.3	375	gGc/gAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	40	281	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	75	433	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3820925	3820925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	42	268	0	ENST00000262367.5:c.2526G>T	p.Gln842His	p.Q842H	ENST00000262367	NM_004380.2	842	caG/caT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	38	652	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27106804	27106804	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	42	652	1	ENST00000324856.7:c.6420del	p.Phe2141SerfsTer59	p.F2141Sfs*59	ENST00000324856	NM_006015.4	2139	Ccc/cc					NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5222731	5222731	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs756013055		P-0005187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	21	289	1	ENST00000357368.4:c.3072del	p.Val1025SerfsTer18	p.V1025Sfs*18	ENST00000357368	NM_002850.3	1024	ccC/cc					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37053574	37053574	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	44	751	3	ENST00000231790.2:c.661G>T	p.Gly221Ter	p.G221*	ENST00000231790	NM_000249.3	221	Gga/Tga					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116411551	116411551	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0005187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	34	447	0	ENST00000397752.3:c.2731-1G>C		p.X911_splice	ENST00000397752	NM_000245.2	911						NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7990723	7990723	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	56	678	1	ENST00000319144.4:c.38A>T	p.Asp13Val	p.D13V	ENST00000319144	NM_001139.2	13	gAc/gTc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437784	52437803	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGTCCTTCTGGGACTCTT	GAGGTCCTTCTGGGACTCTT	-			P-0005187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	66	977	0	ENST00000460680.1:c.1358_1377del	p.Lys453IlefsTer9	p.K453Ifs*9	ENST00000460680	NM_004656.3	453	aAAGAGTCCCAGAAGGACCTC/a					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	86	273	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55231427	55231427	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	52	457	0	ENST00000275493.2:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000275493	NM_005228.3	545	Gag/Aag					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115900	8115922	+	frameshift_variant	Frame_Shift_Del	DEL	CTGACCACGCCCACGCCGATGCA	CTGACCACGCCCACGCCGATGCA	-			P-0006622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	124	383	0	ENST00000346208.3:c.1247_1269del	p.Leu416ProfsTer83	p.L416Pfs*83	ENST00000346208		416	CTGACCACGCCCACGCCGATGCAc/c					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39932646	39932646	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006451-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	393	715	0	ENST00000378444.4:c.1953del	p.Tyr653ThrfsTer16	p.Y653Tfs*16	ENST00000378444	NM_001123385.1	651	atT/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	298	330	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	331	329	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	376	327	1	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70341212	70341212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	326	512	0	ENST00000374080.3:c.771G>T	p.Trp257Cys	p.W257C	ENST00000374080		257	tgG/tgT					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	271	604	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41100948	41100948	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	195	379	0	ENST00000373198.4:c.1408C>T	p.Arg470Ter	p.R470*	ENST00000373198	NM_133170.3	470	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	244	429	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180056292	180056292	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	367	608	0	ENST00000261937.6:c.952C>T	p.Arg318Ter	p.R318*	ENST00000261937	NM_182925.4	318	Cga/Tga					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89357165	89357165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	204	532	0	ENST00000301030.4:c.469A>G	p.Thr157Ala	p.T157A	ENST00000301030	NM_001256183.1	157	Acc/Gcc					NEWRECORD																																																																									
CD79A	0	MSKCC	GRCh37	19	42383707	42383707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	478	567	0	ENST00000221972.3:c.482C>T	p.Thr161Met	p.T161M	ENST00000221972	NM_021601.3	161	aCg/aTg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2983883	2983885	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0008321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	138	641	0	ENST00000396946.4:c.645_647delGAA	p.Lys215del	p.K215del	ENST00000396946	NM_032415.4	215	aaGAAc/aac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	124	362	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			29	118	210	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227661411	227661411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	104	271	0	ENST00000305123.5:c.2044A>T	p.Ser682Cys	p.S682C	ENST00000305123	NM_005544.2	682	Agc/Tgc					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29910587	29910587	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	33	140	0	ENST00000376809.5:c.127G>T	p.Glu43Ter	p.E43*	ENST00000376809	NM_002116.7	43	Gag/Tag					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42798773	42798773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	90	250	0	ENST00000575354.2:c.4345G>A	p.Val1449Met	p.V1449M	ENST00000575354	NM_015125.3	1449	Gtg/Atg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936096	+	missense_variant	Missense_Mutation	DNP	AG	AG	CC			P-0007645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	105	244	0	ENST00000263967.3:c.1637_1638delinsCC	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAG/cCC					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	17	405	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	124	392	1	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175271	112175271	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	19	226	0	ENST00000257430.4:c.3980C>A	p.Ser1327Ter	p.S1327*	ENST00000257430	NM_000038.5	1327	tCa/tAa					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114711367	114711367	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	94	182	0	ENST00000543371.1:c.381+1G>A		p.X127_splice	ENST00000543371	NM_001198531.1	127						NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64572556	64572556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	85	247	0	ENST00000337652.1:c.1315G>A	p.Val439Met	p.V439M	ENST00000337652	NM_130803.2	439	Gtg/Atg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5244166	5244166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	22	352	0	ENST00000357368.4:c.1316G>A	p.Ser439Asn	p.S439N	ENST00000357368	NM_002850.3	439	aGc/aAc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17945509	17945509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	35	272	1	ENST00000458235.1:c.2221C>T	p.Arg741Trp	p.R741W	ENST00000458235	NM_000215.3	741	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	189	217	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46733241	46733241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	139	268	0	ENST00000371975.4:c.1002G>C	p.Glu334Asp	p.E334D	ENST00000371975	NM_003579.3	334	gaG/gaC					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023821	27023821	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	54	326	0	ENST00000324856.7:c.927G>C	p.Gln309His	p.Q309H	ENST00000324856	NM_006015.4	309	caG/caC					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64572006	64572006	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	65	659	1	ENST00000337652.1:c.1648C>A	p.Pro550Thr	p.P550T	ENST00000337652	NM_130803.2	550	Ccg/Acg					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56438146	56438146	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0005422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	65	532	0	ENST00000407977.2:c.847C>T	p.Gln283Ter	p.Q283*	ENST00000407977		283	Cag/Tag					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70349198	70349198	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	81	335	1	ENST00000374080.3:c.3610G>T	p.Asp1204Tyr	p.D1204Y	ENST00000374080		1204	Gac/Tac					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78420955	78420955	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	46	442	0	ENST00000370768.2:c.1765del	p.Tyr589ThrfsTer76	p.Y589Tfs*76	ENST00000370768	NM_003902.3	589	Tac/ac					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0007082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	177	410	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0007082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	52	479	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	2729	467	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	283	568	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110437376	110437376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	43	42	0	ENST00000375856.3:c.1025C>G	p.Ser342Trp	p.S342W	ENST00000375856	NM_003749.2	342	tCg/tGg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143261	30143261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	79	269	1	ENST00000389048.3:c.265G>A	p.Gly89Ser	p.G89S	ENST00000389048	NM_004304.4	89	Ggc/Agc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142281088	142281088	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	119	601	0	ENST00000350721.4:c.1156G>T	p.Glu386Ter	p.E386*	ENST00000350721	NM_001184.3	386	Gag/Tag					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2962845	2962845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	188	453	1	ENST00000396946.4:c.2063G>A	p.Arg688Gln	p.R688Q	ENST00000396946	NM_032415.4	688	cGa/cAa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15983923	15983923	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0009344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	127	471	0	ENST00000268712.3:c.3296C>G	p.Ser1099Ter	p.S1099*	ENST00000268712	NM_006311.3	1099	tCa/tGa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188321	10188321	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006381-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			270	113	391	1	ENST00000256474.2:c.463+1G>A		p.X155_splice	ENST00000256474	NM_000551.3	155						NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562336	21562336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006381-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			355	130	282	0	ENST00000382592.4:c.1583C>T	p.Ser528Leu	p.S528L	ENST00000382592	NM_014572.2	528	tCg/tTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	349	301	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72827599	72827599	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	56	576	0	ENST00000268489.5:c.8982C>G	p.Phe2994Leu	p.F2994L	ENST00000268489	NM_006885.3	2994	ttC/ttG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	149	452	0	ENST00000269305.4:c.827C>G	p.Ala276Gly	p.A276G	ENST00000269305	NM_001126112.2	276	gCc/gGc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5256125	5256125	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	35	333	0	ENST00000357368.4:c.712C>T	p.Arg238Ter	p.R238*	ENST00000357368	NM_002850.3	238	Cga/Tga					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986560	36986585	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGGATACCTGGCCCTGCAGCGCC	GGCTGGATACCTGGCCCTGCAGCGCC	-			P-0009434-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	18	303	0	ENST00000354822.5:c.1104_1129del	p.Ala369ValfsTer61	p.A369Vfs*61	ENST00000354822	NM_001079668.2	368	gcGGCGCTGCAGGGCCAGGTATCCAGCCtg/gctg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	286	330	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	139	294	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	264	392	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45796982	45796982	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	165	318	0	ENST00000372115.3:c.1306A>G	p.Lys436Glu	p.K436E	ENST00000372115	NM_001048171.1	436	Aag/Gag					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88683229	88683229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	90	203	0	ENST00000372037.3:c.1439G>A	p.Arg480Gln	p.R480Q	ENST00000372037	NM_004329.2	480	cGg/cAg					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473601	67473601	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	134	317	0	ENST00000327367.4:c.681C>A	p.Cys227Ter	p.C227*	ENST00000327367	NM_005902.3	227	tgC/tgA					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14029237	14029237	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	170	470	0	ENST00000311895.7:c.1448G>T	p.Arg483Ile	p.R483I	ENST00000311895	NM_005236.2	483	aGa/aTa					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45374914	45374914	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	279	380	0	ENST00000262160.6:c.929G>C	p.Arg310Thr	p.R310T	ENST00000262160	NM_005901.5	310	aGg/aCg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112170766	112170766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	150	443	0	ENST00000257430.4:c.1862del	p.Thr621IlefsTer9	p.T621Ifs*9	ENST00000257430	NM_000038.5	621	aCt/at					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131924382	131924382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	83	165	0	ENST00000265335.6:c.1055G>A	p.Arg352His	p.R352H	ENST00000265335		352	cGt/cAt					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36939093	36939093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	387	547	0	ENST00000361632.4:c.616G>C	p.Glu206Gln	p.E206Q	ENST00000361632		206	Gag/Cag					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106156204	106156204	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150072691		P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	216	186	2	ENST00000380013.4:c.1105C>T	p.Arg369Trp	p.R369W	ENST00000380013	NM_001127208.2	369	Cgg/Tgg					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5072550	5072550	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	222	253	0	ENST00000381652.3:c.1700T>A	p.Val567Glu	p.V567E	ENST00000381652	NM_004972.3	567	gTa/gAa					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102195886	102195886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	516	609	0	ENST00000263464.3:c.646G>A	p.Glu216Lys	p.E216K	ENST00000263464	NM_001165.4	216	Gaa/Aaa					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28599058	28599058	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	224	197	0	ENST00000241453.7:c.2230C>T	p.Gln744Ter	p.Q744*	ENST00000241453	NM_004119.2	744	Cag/Tag					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110437500	110437500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	241	313	0	ENST00000375856.3:c.901C>T	p.Arg301Trp	p.R301W	ENST00000375856	NM_003749.2	301	Cgg/Tgg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220578	1220578	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	144	281	0	ENST00000326873.7:c.598-2A>T		p.X200_splice	ENST00000326873	NM_000455.4	200						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610153	10610153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	373	448	1	ENST00000171111.5:c.557G>T	p.Gly186Val	p.G186V	ENST00000171111	NM_203500.1	186	gGc/gTc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105243048	105243048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	603	438	1	ENST00000349310.3:c.235C>A	p.Gln79Lys	p.Q79K	ENST00000349310	NM_001014432.1	79	Cag/Aag					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128752800	128752800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	77	230	0	ENST00000377970.2:c.961C>G	p.Gln321Glu	p.Q321E	ENST00000377970	NM_002467.4	321	Cag/Gag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151860539	151860541	+	frameshift_variant	Frame_Shift_Del	DEL	GAT	GAT	AA			P-0005570-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	218	358	0	ENST00000262189.6:c.10121_10123delinsTT	p.Asn3374IlefsTer10	p.N3374Ifs*10	ENST00000262189	NM_170606.2	3374	aATCca/aTTca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	812	927	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11307962	11307962	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	55	847	0	ENST00000361445.4:c.1030G>A	p.Gly344Arg	p.G344R	ENST00000361445	NM_004958.3	344	Gga/Aga					NEWRECORD																																																																									
VTCN1	0	MSKCC	GRCh37	1	117695885	117695885	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	267	693	0	ENST00000369458.3:c.552A>C	p.Gln184His	p.Q184H	ENST00000369458	NM_024626.3	184	caA/caC					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198283294	198283294	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	284	767	0	ENST00000335508.6:c.434C>G	p.Pro145Arg	p.P145R	ENST00000335508	NM_012433.2	145	cCt/cGt					NEWRECORD																																																																									
SHQ1	0	MSKCC	GRCh37	3	72861838	72861838	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs142487191		P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	201	657	0	ENST00000325599.8:c.1044A>G	p.Ile348Met	p.I348M	ENST00000325599	NM_018130.2	348	atA/atG					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670540	134670540	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	230	873	1	ENST00000398015.3:c.451T>C	p.Phe151Leu	p.F151L	ENST00000398015	NM_004441.4	151	Ttt/Ctt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152129057	152129057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	56	875	0	ENST00000206249.3:c.10A>G	p.Thr4Ala	p.T4A	ENST00000206249	NM_000125.3	4	Acc/Gcc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508727	106508727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	466	665	1	ENST00000359195.3:c.721C>A	p.Pro241Thr	p.P241T	ENST00000359195	NM_002649.2	241	Ccc/Acc					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88659550	88659550	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	41	486	0	ENST00000372037.3:c.334-1G>A		p.X112_splice	ENST00000372037	NM_004329.2	112						NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2106666	2106666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	427	875	0	ENST00000219476.3:c.670G>A	p.Ala224Thr	p.A224T	ENST00000219476	NM_000548.3	224	Gcc/Acc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11101973	11101973	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	629	763	1	ENST00000344626.4:c.1393G>T	p.Glu465Ter	p.E465*	ENST00000344626	NM_003072.3	465	Gag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29553615	29553616	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TA			P-0004869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	29	569	0	ENST00000358273.4:c.2164_2165delinsTA	p.Gly722Ter	p.G722*	ENST00000358273	NM_001042492.2	722	GGg/TAg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	20	355	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1087	32	562	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187540172	187540172	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	241	543	1	ENST00000441802.2:c.7568T>G	p.Ile2523Ser	p.I2523S	ENST00000441802	NM_005245.3	2523	aTt/aGt					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123353298	123353298	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143978938		P-0006577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	282	533	4	ENST00000358487.5:c.34G>A	p.Val12Met	p.V12M	ENST00000358487	NM_000141.4	12	Gtg/Atg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	18	478	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	28	342	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	54	427	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56440715	56440715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	81	426	0	ENST00000407977.2:c.503A>G	p.Asp168Gly	p.D168G	ENST00000407977		168	gAc/gGc					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100617161	100617161	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	35	300	0	ENST00000308731.7:c.588G>C	p.Gln196His	p.Q196H	ENST00000308731	NM_000061.2	196	caG/caC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577043	7577062	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCGTGGTGAGGCTCCCCT	GCTCGTGGTGAGGCTCCCCT	-			P-0009974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	68	404	0	ENST00000269305.4:c.876_895del	p.Lys292AsnfsTer7	p.K292Nfs*7	ENST00000269305	NM_001126112.2	292	aaAGGGGAGCCTCACCACGAGCtg/aatg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	317	531	0	ENST00000269305.4:c.644G>A	p.Ser215Asn	p.S215N	ENST00000269305	NM_001126112.2	215	aGt/aAt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49427012	49427012	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	255	304	0	ENST00000301067.7:c.11476C>T	p.Gln3826Ter	p.Q3826*	ENST00000301067	NM_003482.3	3826	Cag/Tag					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1293471	1293471	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	76	373	0	ENST00000310581.5:c.1530G>A	p.Trp510Ter	p.W510*	ENST00000310581	NM_198253.2	510	tgG/tgA					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27777978	27777978	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1639	407	986	1	ENST00000369163.2:c.127C>T	p.Arg43Trp	p.R43W	ENST00000369163	NM_003536.2	43	Cgg/Tgg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118374436	118374440	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAG	AGGAG	-			P-0007661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	159	378	0	ENST00000534358.1:c.7829_7833del	p.Gln2610ArgfsTer5	p.Q2610Rfs*5	ENST00000534358	NM_005933.3	2610	cAGGAG/c					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	234	558	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
CD79A	0	MSKCC	GRCh37	19	42383072	42383072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	192	491	0	ENST00000221972.3:c.92A>G	p.Gln31Arg	p.Q31R	ENST00000221972	NM_021601.3	31	cAg/cGg					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42791337	42791337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	69	348	2	ENST00000575354.2:c.397G>A	p.Gly133Ser	p.G133S	ENST00000575354	NM_015125.3	133	Ggc/Agc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	67	75	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0005129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	275	223	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29416704	29416704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	160	139	0	ENST00000389048.3:c.4249G>A	p.Asp1417Asn	p.D1417N	ENST00000389048	NM_004304.4	1417	Gac/Aac					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25965504	25965504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	191	327	0	ENST00000435504.4:c.3702G>T	p.Glu1234Asp	p.E1234D	ENST00000435504		1234	gaG/gaT					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36988507	36988507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	173	189	0	ENST00000354822.5:c.146C>T	p.Pro49Leu	p.P49L	ENST00000354822	NM_001079668.2	49	cCc/cTc					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95557639	95557639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	107	323	0	ENST00000343455.3:c.5428G>A	p.Asp1810Asn	p.D1810N	ENST00000343455	NM_177438.2	1810	Gat/Aat					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88472646	88472646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	122	182	0	ENST00000360948.2:c.1909A>G	p.Met637Val	p.M637V	ENST00000360948	NM_001012338.2	637	Atg/Gtg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678572	88678572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	112	162	0	ENST00000360948.2:c.964G>A	p.Glu322Lys	p.E322K	ENST00000360948	NM_001012338.2	322	Gag/Aag					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3778617	3778617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	160	157	0	ENST00000262367.5:c.6431C>T	p.Ala2144Val	p.A2144V	ENST00000262367	NM_004380.2	2144	gCc/gTc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52637607	52637611	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCA	CTCCA	-			P-0005129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	128	281	0	ENST00000394830.3:c.2705_2709del	p.Val902GlufsTer15	p.V902Efs*15	ENST00000394830	NM_018313.4	902	gTGGAG/g					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	104	395	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	71	269	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76855262	76855262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	54	222	0	ENST00000373344.5:c.5725G>A	p.Glu1909Lys	p.E1909K	ENST00000373344	NM_000489.3	1909	Gaa/Aaa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174516	112174520	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTG	TCCTG	-			P-0005998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	71	293	0	ENST00000257430.4:c.3226_3230del	p.Pro1076LeufsTer3	p.P1076Lfs*3	ENST00000257430	NM_000038.5	1075	taTCCTGtt/tatt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	121	440	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	48	275	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc					NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	74	397	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c					NEWRECORD																																																																									
BCL10	0	MSKCC	GRCh37	1	85736387	85736387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187744101		P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	86	865	0	ENST00000370580.1:c.260G>A	p.Arg87Gln	p.R87Q	ENST00000370580	NM_003921.4	87	cGg/cAg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267359	198267359	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	91	554	0	ENST00000335508.6:c.1998G>C	p.Lys666Asn	p.K666N	ENST00000335508	NM_012433.2	666	aaG/aaC					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341842	8341842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	29	639	0	ENST00000356435.5:c.4798G>T	p.Asp1600Tyr	p.D1600Y	ENST00000356435		1600	Gac/Tac					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21970982	21970982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	69	513	0	ENST00000304494.5:c.376G>T	p.Val126Phe	p.V126F	ENST00000304494	NM_000077.4	126	Gtc/Ttc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970982	21970982	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	69	513	0	ENST00000304494.5:c.376G>T	p.Val126Phe	p.V126F	ENST00000304494	NM_000077.4	126	Gtc/Ttc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974748	21974748	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	40	264	0	ENST00000304494.5:c.79G>T	p.Glu27Ter	p.E27*	ENST00000304494	NM_000077.4	27	Gag/Tag					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3820792	3820792	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	79	424	0	ENST00000262367.5:c.2659C>A	p.Gln887Lys	p.Q887K	ENST00000262367	NM_004380.2	887	Cag/Aag					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17131262	17131262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	94	553	0	ENST00000285071.4:c.190G>T	p.Ala64Ser	p.A64S	ENST00000285071	NM_144997.5	64	Gca/Tca					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5222868	5222868	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	95	259	0	ENST00000357368.4:c.2935C>T	p.Arg979Ter	p.R979*	ENST00000357368	NM_002850.3	979	Cga/Tga					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47006898	47006898	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	120	512	2	ENST00000329236.7:c.17+1G>T		p.X6_splice	ENST00000329236	NM_001204466.1	6						NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007841	45007841	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	37	364	0	ENST00000558401.1:c.288del	p.Asp96GlufsTer7	p.D96Efs*7	ENST00000558401	NM_004048.2	96	gaT/ga					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45797481	45797485	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGG	CGAGG	T			P-0005179-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	76	464	0	ENST00000372115.3:c.992_996delinsA	p.Pro331GlnfsTer62	p.P331Qfs*62	ENST00000372115	NM_001048171.1	331	cCCTCG/cA					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151853361	151853361	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	378	406	0	ENST00000262189.6:c.11741A>G	p.Gln3914Arg	p.Q3914R	ENST00000262189	NM_170606.2	3914	cAg/cGg					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371654	55371654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	255	514	0	ENST00000297316.4:c.344G>A	p.Arg115Gln	p.R115Q	ENST00000297316	NM_022454.3	115	cGg/cAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	39	488	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099187	157099195	+	inframe_deletion	In_Frame_Del	DEL	GCGGCGGCA	GCGGCGGCA	-			P-0008390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	209	333	0	ENST00000346085.5:c.133_141delGCGGCGGCA	p.Ala45_Ala47del	p.A45_A47del	ENST00000346085	NM_020732.3	42	GCGGCGGCA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	620	292	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061211	38061240	+	inframe_deletion	In_Frame_Del	DEL	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	-			P-0008390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	225	274	0	ENST00000250448.2:c.749_778del	p.Ser250_Tyr259del	p.S250_Y259del	ENST00000250448	NM_004496.3	250	tCCGGCAACATGTTCGAGAACGGCTGCTACTtg/ttg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16237706	16237706	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	386	531	0	ENST00000375759.3:c.1153C>T	p.Gln385Ter	p.Q385*	ENST00000375759	NM_015001.2	385	Cag/Tag					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11123667	11123667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	458	465	0	ENST00000344626.4:c.2317C>A	p.Leu773Met	p.L773M	ENST00000344626	NM_003072.3	773	Ctg/Atg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76777865	76777865	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0008390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	767	268	0	ENST00000373344.5:c.6851del	p.Gly2284AspfsTer2	p.G2284Dfs*2	ENST00000373344	NM_000489.3	2284	gGa/ga					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425896	49425896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	112	563	0	ENST00000301067.7:c.12592C>T	p.Arg4198Ter	p.R4198*	ENST00000301067	NM_003482.3	4198	Cga/Tga					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553356	106553363	+	frameshift_variant	Frame_Shift_Del	DEL	CCGAGGCT	CCGAGGCT	G			P-0006507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	75	296	0	ENST00000369096.4:c.1321_1328delinsG	p.Pro441GlyfsTer63	p.P441Gfs*63	ENST00000369096	NM_001198.3	441	CCGAGGCTg/Gg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108216624	108216626	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	275	287	0	ENST00000278616.4:c.8578_8580del	p.Ser2860del	p.S2860del	ENST00000278616	NM_000051.3	2858	aCTTct/act					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430864	181430864	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	784	527	0	ENST00000325404.1:c.716C>A	p.Ser239Tyr	p.S239Y	ENST00000325404	NM_003106.3	239	tCc/tAc					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729706	41729706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	203	640	0	ENST00000242208.4:c.823G>T	p.Gly275Cys	p.G275C	ENST00000242208	NM_002192.2	275	Ggt/Tgt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8338983	8338983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	212	493	0	ENST00000356435.5:c.5318C>A	p.Pro1773His	p.P1773H	ENST00000356435		1773	cCc/cAc					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103514736	103514736	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	182	394	0	ENST00000355739.4:c.1237G>A	p.Gly413Arg	p.G413R	ENST00000355739	NM_000123.3	413	Ggg/Agg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16062108	16062108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	520	486	0	ENST00000268712.3:c.698G>T	p.Arg233Leu	p.R233L	ENST00000268712	NM_006311.3	233	cGc/cTc					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39576601	39576601	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	297	330	0	ENST00000262039.4:c.892-1G>A		p.X298_splice	ENST00000262039	NM_002647.2	298						NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220706	1220706	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	528	338	0	ENST00000326873.7:c.724G>A	p.Gly242Arg	p.G242R	ENST00000326873	NM_000455.4	242	Ggg/Agg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600008	10600008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	553	423	0	ENST00000171111.5:c.1568G>T	p.Gly523Val	p.G523V	ENST00000171111	NM_203500.1	523	gGg/gTg					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26970431	26970431	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	366	481	1	ENST00000381527.3:c.802del	p.Glu268LysfsTer3	p.E268Kfs*3	ENST00000381527	NM_001260.1	267	tGg/tg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	58	450	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	111983042	111983042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1223	79	842	0	ENST00000368678.4:c.1505A>G	p.Lys502Arg	p.K502R	ENST00000368678		502	aAg/aGg					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52724365	52724365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	84	526	0	ENST00000322088.6:c.1497G>A	p.Met499Ile	p.M499I	ENST00000322088	NM_014225.5	499	atG/atA					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9543542	9543542	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	93	586	2	ENST00000353224.5:c.1612A>T	p.Thr538Ser	p.T538S	ENST00000353224	NM_177990.2	538	Acc/Tcc					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1325437	1325437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	116	522	0	ENST00000381566.1:c.238C>T	p.His80Tyr	p.H80Y	ENST00000381566		80	Cac/Tac					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191507	10191507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	149	444	1	ENST00000256474.2:c.500G>A	p.Arg167Gln	p.R167Q	ENST00000256474	NM_000551.3	167	cGg/cAg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	37	601	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518010	8518010	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	60	709	0	ENST00000356435.5:c.1381C>T	p.Gln461Ter	p.Q461*	ENST00000356435		461	Caa/Taa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47034444	47034444	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	64	364	0	ENST00000329236.7:c.298G>T	p.Glu100Ter	p.E100*	ENST00000329236	NM_001204466.1	100	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	238	546	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45798449	45798449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	232	640	0	ENST00000372115.3:c.520G>A	p.Glu174Lys	p.E174K	ENST00000372115	NM_001048171.1	174	Gag/Aag					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134920381	134920381	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	196	629	0	ENST00000398015.3:c.2196G>C	p.Met732Ile	p.M732I	ENST00000398015	NM_004441.4	732	atG/atC					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49037969	49037969	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	99	428	0	ENST00000267163.4:c.2209G>T	p.Glu737Ter	p.E737*	ENST00000267163	NM_000321.2	737	Gag/Tag					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435612	110435612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	544	184	1	ENST00000375856.3:c.2789G>A	p.Arg930His	p.R930H	ENST00000375856	NM_003749.2	930	cGc/cAc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105241417	105241417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	225	512	0	ENST00000349310.3:c.563C>G	p.Ala188Gly	p.A188G	ENST00000349310	NM_001014432.1	188	gCc/gGc					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23646717	23646717	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	130	582	0	ENST00000261584.4:c.1150G>T	p.Glu384Ter	p.E384*	ENST00000261584	NM_024675.3	384	Gaa/Taa					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31387129	31387129	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	170	398	0	ENST00000328111.2:c.1754C>T	p.Ala585Val	p.A585V	ENST00000328111	NM_006892.3	585	gCg/gTg					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39755665	39755665	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	132	587	1	ENST00000288319.7:c.1100G>T	p.Arg367Leu	p.R367L	ENST00000288319	NM_182918.3	367	cGc/cTc					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145739890	145739956	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACGGTGGCAGGCCAGACACCTGCAAATGCAGGAGCGACAGCCGTCATACGCCAGCCCAGCCCTGGC	CACGGTGGCAGGCCAGACACCTGCAAATGCAGGAGCGACAGCCGTCATACGCCAGCCCAGCCCTGGC	-			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	92	497	0	ENST00000428558.2:c.1621-47_1640del		p.X541_splice	ENST00000428558	NM_004260.3	541						NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27059204	27059210	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCCC	CAGCCCC	-			P-0006896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	134	562	0	ENST00000324856.7:c.1842_1848del	p.Ala615GlnfsTer2	p.A615Qfs*2	ENST00000324856	NM_006015.4	614	tCAGCCCCc/tc					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14021950	14021950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	123	371	0	ENST00000311895.7:c.650C>G	p.Ser217Cys	p.S217C	ENST00000311895	NM_005236.2	217	tCt/tGt					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2199905	2199905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	115	488	0	ENST00000398665.3:c.674C>T	p.Ser225Leu	p.S225L	ENST00000398665	NM_032482.2	225	tCa/tTa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412017	116412034	+	inframe_deletion	In_Frame_Del	DEL	TAGACTACCGAGCTACTT	TAGACTACCGAGCTACTT	-			P-0006941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	102	336	0	ENST00000397752.3:c.3003_3020del	p.Asp1002_Phe1007del	p.D1002_F1007del	ENST00000397752	NM_000245.2	1001	gTAGACTACCGAGCTACTTtt/gtt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	242	246	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371662	55371662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	59	241	0	ENST00000297316.4:c.352G>A	p.Val118Met	p.V118M	ENST00000297316	NM_022454.3	118	Gtg/Atg					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64138778	64138778	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	153	388	0	ENST00000334205.4:c.2145G>C	p.Glu715Asp	p.E715D	ENST00000334205	NM_003942.2	715	gaG/gaC					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881426	37881426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	386	207	0	ENST00000269571.5:c.2618A>G	p.Asp873Gly	p.D873G	ENST00000269571		873	gAc/gGc					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36231802	36231802	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	458	406	1	ENST00000300305.3:c.582A>T	p.Lys194Asn	p.K194N	ENST00000300305		194	aaA/aaT					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0009181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	144	124	0	ENST00000412916.2:c.165+1del		p.X55_splice	ENST00000412916		55						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0007555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	65	475	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	160	438	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32						NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	198	327	0	ENST00000256078.4:c.436G>C	p.Ala146Pro	p.A146P	ENST00000256078	NM_033360.2	146	Gca/Cca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	298	672	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643504	52643504	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	177	532	0	ENST00000394830.3:c.2392A>G	p.Arg798Gly	p.R798G	ENST00000394830	NM_018313.4	798	Aga/Gga					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98238332	98238332	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	171	379	0	ENST00000331920.6:c.1712G>A	p.Arg571Gln	p.R571Q	ENST00000331920	NM_000264.3	571	cGg/cAg					NEWRECORD																																																																									
SMARCD1	0	MSKCC	GRCh37	12	50480542	50480542	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	97	488	0	ENST00000394963.4:c.412C>T	p.Arg138Cys	p.R138C	ENST00000394963	NM_003076.4	138	Cgt/Tgt					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40354464	40354464	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	224	605	0	ENST00000293328.3:c.2131T>G	p.Phe711Val	p.F711V	ENST00000293328	NM_012448.3	711	Ttt/Gtt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041534	42041534	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1236	356	841	0	ENST00000219905.7:c.5731del	p.Ser1911AlafsTer12	p.S1911Afs*12	ENST00000219905	NM_001164273.1	1910	cAa/ca					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175464	112175468	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAC	TTCAC	-			P-0009851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	266	394	0	ENST00000257430.4:c.4175_4179del	p.Ser1392Ter	p.S1392*	ENST00000257430	NM_000038.5	1391	agTTCACtt/agtt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0007407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	78	247	1				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0007407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	21	201	1	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120466381	120466381	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	119	412	0	ENST00000256646.2:c.4738A>T	p.Lys1580Ter	p.K1580*	ENST00000256646	NM_024408.3	1580	Aag/Tag					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47657047	47657047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35717997		P-0007407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	37	460	0	ENST00000233146.2:c.1243C>T	p.Pro415Ser	p.P415S	ENST00000233146	NM_000251.2	415	Cct/Tct					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66217262	66217262	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	112	351	1	ENST00000273854.3:c.2353T>A	p.Ser785Thr	p.S785T	ENST00000273854	NM_004439.5	785	Tct/Act					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66231757	66231757	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	96	366	0	ENST00000273854.3:c.1943G>T	p.Arg648Ile	p.R648I	ENST00000273854	NM_004439.5	648	aGa/aTa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139402468	139402468	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	319	478	1	ENST00000277541.6:c.3449C>A	p.Ser1150Ter	p.S1150*	ENST00000277541	NM_017617.3	1150	tCa/tAa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28931733	28931733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	53	437	1	ENST00000282397.4:c.2206C>A	p.Gln736Lys	p.Q736K	ENST00000282397	NM_002019.4	736	Cag/Aag					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4110558	4110558	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	44	333	0	ENST00000262948.5:c.399C>G	p.Phe133Leu	p.F133L	ENST00000262948	NM_030662.3	133	ttC/ttG					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44879910	44879910	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	138	296	0	ENST00000377967.4:c.499A>C	p.Lys167Gln	p.K167Q	ENST00000377967	NM_021140.2	167	Aag/Cag					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23646578	23646581	+	frameshift_variant	Frame_Shift_Del	DEL	TGAA	TGAA	-			P-0007407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	69	269	0	ENST00000261584.4:c.1286_1289del	p.Ile429ArgfsTer22	p.I429Rfs*22	ENST00000261584	NM_024675.3	429	aTTCAg/ag					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81350086	81350086	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	178	459	0	ENST00000222390.5:c.1246del	p.Asp416ThrfsTer20	p.D416Tfs*20	ENST00000222390	NM_000601.4	416	Gac/ac					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99251017	99251018	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0007407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	75	344	0	ENST00000268035.6:c.321_322delinsA	p.Gly108AlafsTer15	p.G108Afs*15	ENST00000268035	NM_000875.3	107	cgCGgc/cgAgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	26	399	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0005056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	38	432	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453153	140453153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	24	346	0	ENST00000288602.6:c.1782T>A	p.Asp594Glu	p.D594E	ENST00000288602	NM_004333.4	594	gaT/gaA					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43608397	43608397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1611	158	918	1	ENST00000355710.3:c.1745C>T	p.Pro582Leu	p.P582L	ENST00000355710	NM_020975.4	582	cCt/cTt					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0009173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	50	421	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	53	403	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0009173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	129	398	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175876	112175876	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	63	424	0	ENST00000257430.4:c.4585C>T	p.Gln1529Ter	p.Q1529*	ENST00000257430	NM_000038.5	1529	Cag/Tag					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114925700	114925700	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1390	103	746	0	ENST00000543371.1:c.1778C>T	p.Pro593Leu	p.P593L	ENST00000543371	NM_001198531.1	593	cCg/cTg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29701105	29701105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	42	315	0	ENST00000358273.4:c.8452G>A	p.Ala2818Thr	p.A2818T	ENST00000358273	NM_001042492.2	2818	Gca/Aca					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117738	70117750	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TCCCCGTGTGCAT	TCCCCGTGTGCAT	GA			P-0009173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	50	523	0	ENST00000245479.2:c.206_218delinsGA	p.Phe69Ter	p.F69*	ENST00000245479	NM_000346.3	69	tTCCCCGTGTGCATc/tGAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	567	723	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108117799	108117799	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202160435		P-0003936-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			708	51	209	1	ENST00000278616.4:c.1010G>A	p.Arg337His	p.R337H	ENST00000278616	NM_000051.3	337	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003936-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			620	266	318	0	ENST00000269305.4:c.584T>A	p.Ile195Asn	p.I195N	ENST00000269305	NM_001126112.2	195	aTc/aAc					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156843724	156843724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003936-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1009	135	402	0	ENST00000524377.1:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000524377	NM_002529.3	384	Gag/Aag					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187557388	187557388	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0003936-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			373	60	220	0	ENST00000441802.2:c.3974T>G	p.Ile1325Ser	p.I1325S	ENST00000441802	NM_005245.3	1325	aTt/aGt					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56189484	56189484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003936-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			498	67	222	0	ENST00000399503.3:c.4516C>T	p.Pro1506Ser	p.P1506S	ENST00000399503	NM_005921.1	1506	Cca/Tca					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112292	115112292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003936-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			132	13	64	0	ENST00000257566.3:c.1448C>T	p.Thr483Met	p.T483M	ENST00000257566	NM_016569.3	483	aCg/aTg					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	27	429	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578382	7578382	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	41	345	0	ENST00000269305.4:c.548C>G	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/tGa					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	153	241	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	247	406	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	413	516	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944629	40944629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	136	165	0	ENST00000373198.4:c.1873C>T	p.Gln625Ter	p.Q625*	ENST00000373198	NM_133170.3	625	Cag/Tag					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561352	9561352	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	288	407	0	ENST00000353224.5:c.430G>A	p.Glu144Lys	p.E144K	ENST00000353224	NM_177990.2	144	Gaa/Aaa					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39644733	39644733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	307	477	0	ENST00000262039.4:c.2462C>T	p.Ser821Phe	p.S821F	ENST00000262039	NM_002647.2	821	tCc/tTc					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876208	35876208	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	268	437	1	ENST00000303115.3:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000303115	NM_002185.3	334	Gaa/Aaa					NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36826860	36826860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	383	536	0	ENST00000373129.3:c.74C>T	p.Ser25Phe	p.S25F	ENST00000373129	NM_032017.1	25	tCt/tTt					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085917	16085917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	136	281	0	ENST00000281043.3:c.1093C>T	p.Pro365Ser	p.P365S	ENST00000281043	NM_005378.4	365	Cca/Tca					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212652813	212652813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	218	565	0	ENST00000342788.4:c.493G>A	p.Asp165Asn	p.D165N	ENST00000342788	NM_005235.2	165	Gat/Aat					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220440144	220440144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	462	654	1	ENST00000243786.2:c.997G>A	p.Gly333Arg	p.G333R	ENST00000243786	NM_002191.3	333	Ggg/Agg					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55964893	55964893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	319	496	0	ENST00000263923.4:c.2344C>T	p.Leu782Phe	p.L782F	ENST00000263923	NM_002253.2	782	Ctt/Ttt					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56178644	56178644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	227	325	0	ENST00000399503.3:c.3617C>T	p.Pro1206Leu	p.P1206L	ENST00000399503	NM_005921.1	1206	cCt/cTt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152265323	152265323	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	190	328	0	ENST00000206249.3:c.776G>A	p.Arg259Gln	p.R259Q	ENST00000206249	NM_000125.3	259	cGa/cAa					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161781165	161781165	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	298	515	0	ENST00000366898.1:c.1240A>G	p.Thr414Ala	p.T414A	ENST00000366898	NM_004562.2	414	Acc/Gcc					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23539056	23539056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	253	412	1	ENST00000380871.4:c.383G>A	p.Arg128Gln	p.R128Q	ENST00000380871	NM_006167.3	128	cGa/cAa					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114925412	114925412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	478	592	1	ENST00000543371.1:c.1490C>T	p.Pro497Leu	p.P497L	ENST00000543371	NM_001198531.1	497	cCg/cTg					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134975	41134975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	582	721	0	ENST00000379561.5:c.653C>T	p.Ser218Phe	p.S218F	ENST00000379561	NM_002015.3	218	tCc/tTc					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99486235	99486235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	362	376	0	ENST00000268035.6:c.3541C>T	p.Pro1181Ser	p.P1181S	ENST00000268035	NM_000875.3	1181	Cct/Tct					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89877143	89877143	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141918444		P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	308	479	0	ENST00000389301.3:c.494C>T	p.Ser165Phe	p.S165F	ENST00000389301	NM_000135.2	165	tCc/tTc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15272206	15272206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	112	198	1	ENST00000263388.2:c.6233G>A	p.Arg2078Gln	p.R2078Q	ENST00000263388	NM_000435.2	2078	cGg/cAg					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30032793	30032794	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	TT			P-0008403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	369	459	0	ENST00000338641.4:c.168_169delinsTT	p.Arg57Ter	p.R57*	ENST00000338641	NM_000268.3	56	ctCCga/ctTTga					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39911532	39911532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	211	438	0	ENST00000378444.4:c.5098C>T	p.Gln1700Ter	p.Q1700*	ENST00000378444	NM_001123385.1	1700	Cag/Tag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162807	47162807	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	95	403	0	ENST00000409792.3:c.3319G>T	p.Glu1107Ter	p.E1107*	ENST00000409792	NM_014159.6	1107	Gag/Tag					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52598097	52598097	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	143	577	0	ENST00000394830.3:c.3769A>T	p.Lys1257Ter	p.K1257*	ENST00000394830	NM_018313.4	1257	Aaa/Taa					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007901	45007901	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0005822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	88	279	0	ENST00000558401.1:c.346+2del		p.X116_splice	ENST00000558401	NM_004048.2	116						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	236	366	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8525003	8525003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	120	375	1	ENST00000356435.5:c.601G>A	p.Asp201Asn	p.D201N	ENST00000356435		201	Gac/Aac					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100922182	100922182	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1716	185	519	0	ENST00000325455.5:c.2330A>T	p.Tyr777Phe	p.Y777F	ENST00000325455	NM_001202474.3	777	tAt/tTt					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562696	21562696	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	17	156	0	ENST00000382592.4:c.1223C>G	p.Ser408Cys	p.S408C	ENST00000382592	NM_014572.2	408	tCc/tGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	43	358	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114920452	114920452	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	73	566	0	ENST00000543371.1:c.1391+2T>C		p.X464_splice	ENST00000543371	NM_001198531.1	464						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	91	350	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226595555	226595555	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	75	440	0	ENST00000366794.5:c.76G>C	p.Glu26Gln	p.E26Q	ENST00000366794	NM_001618.3	26	Gag/Cag					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39937175	39937175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	102	254	0	ENST00000378444.4:c.8C>T	p.Ser3Leu	p.S3L	ENST00000378444	NM_001123385.1	3	tCa/tTa					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248780	212248780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	28	222	0	ENST00000342788.4:c.3487C>G	p.Leu1163Val	p.L1163V	ENST00000342788	NM_005235.2	1163	Ctg/Gtg					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215617244	215617244	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	102	549	0	ENST00000260947.4:c.1604A>T	p.Asp535Val	p.D535V	ENST00000260947	NM_000465.2	535	gAt/gTt					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71096124	71096124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	130	487	0	ENST00000318789.4:c.633G>T	p.Gln211His	p.Q211H	ENST00000318789	NM_032682.5	211	caG/caT					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851787	134851787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	169	459	0	ENST00000398015.3:c.1193C>G	p.Ala398Gly	p.A398G	ENST00000398015	NM_004441.4	398	gCc/gGc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134960025	134960025	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	127	481	0	ENST00000398015.3:c.2382G>T	p.Glu794Asp	p.E794D	ENST00000398015	NM_004441.4	794	gaG/gaT					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176519385	176519385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	119	477	0	ENST00000292408.4:c.791G>T	p.Gly264Val	p.G264V	ENST00000292408	NM_213647.1	264	gGc/gTc					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675723	30675723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1312	93	768	0	ENST00000376406.3:c.2633G>T	p.Gly878Val	p.G878V	ENST00000376406	NM_014641.2	878	gGg/gTg					NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36652159	36652159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	56	408	0	ENST00000244741.5:c.281G>C	p.Arg94Pro	p.R94P	ENST00000244741	NM_000389.4	94	cGg/cCg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94068124	94068124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	184	785	0	ENST00000369303.4:c.838G>T	p.Gly280Cys	p.G280C	ENST00000369303	NM_004440.3	280	Ggc/Tgc					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50459486	50459486	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	97	500	0	ENST00000331340.3:c.775G>C	p.Glu259Gln	p.E259Q	ENST00000331340	NM_006060.4	259	Gag/Cag					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372141	55372141	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	16	139	0	ENST00000297316.4:c.831G>T	p.Glu277Asp	p.E277D	ENST00000297316	NM_022454.3	277	gaG/gaT					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8376039	8376039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	55	519	0	ENST00000356435.5:c.4558C>A	p.Pro1520Thr	p.P1520T	ENST00000356435		1520	Cct/Act					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405020	70405020	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	65	503	0	ENST00000373644.4:c.2534A>T	p.His845Leu	p.H845L	ENST00000373644	NM_030625.2	845	cAt/cTt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56482341	56482341	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	150	578	0	ENST00000267101.3:c.889G>C	p.Asp297His	p.D297H	ENST00000267101	NM_001982.3	297	Gat/Cat					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865122	57865122	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1427	299	951	0	ENST00000228682.2:c.2599C>A	p.Gln867Lys	p.Q867K	ENST00000228682	NM_005269.2	867	Cag/Aag					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28578211	28578211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	125	559	0	ENST00000241453.7:c.2960A>T	p.Gln987Leu	p.Q987L	ENST00000241453	NM_004119.2	987	cAg/cTg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32969038	32969038	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	97	662	0	ENST00000380152.3:c.9469G>C	p.Glu3157Gln	p.E3157Q	ENST00000380152		3157	Gag/Cag					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73340135	73340135	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	90	425	0	ENST00000377767.4:c.1945A>G	p.Ile649Val	p.I649V	ENST00000377767	NM_014953.3	649	Ata/Gta					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110437376	110437376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	22	97	0	ENST00000375856.3:c.1025C>G	p.Ser342Trp	p.S342W	ENST00000375856	NM_003749.2	342	tCg/tGg					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23647047	23647047	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	104	559	0	ENST00000261584.4:c.820A>T	p.Thr274Ser	p.T274S	ENST00000261584	NM_024675.3	274	Act/Tct					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23647305	23647305	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	110	450	1	ENST00000261584.4:c.562G>T	p.Ala188Ser	p.A188S	ENST00000261584	NM_024675.3	188	Gct/Tct					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72830288	72830288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	60	690	2	ENST00000268489.5:c.6293C>T	p.Ser2098Leu	p.S2098L	ENST00000268489	NM_006885.3	2098	tCg/tTg					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618422	37618422	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	136	530	0	ENST00000447079.4:c.98G>C	p.Arg33Thr	p.R33T	ENST00000447079	NM_015083.1	33	aGa/aCa					NEWRECORD																																																																									
HOXB13	0	MSKCC	GRCh37	17	46805429	46805429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1554	214	858	1	ENST00000290295.7:c.527G>T	p.Gly176Val	p.G176V	ENST00000290295	NM_006361.5	176	gGt/gTt					NEWRECORD																																																																									
CD79B	0	MSKCC	GRCh37	17	62007222	62007222	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	132	487	0	ENST00000392795.3:c.460C>A	p.Gln154Lys	p.Q154K	ENST00000392795	NM_001039933.1	154	Cag/Aag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600046	10600046	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	126	381	0	ENST00000171111.5:c.1532-2A>G		p.X511_splice	ENST00000171111	NM_203500.1	511						NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18279935	18279935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	184	435	0	ENST00000222254.8:c.2018C>T	p.Thr673Met	p.T673M	ENST00000222254	NM_005027.3	673	aCg/aTg					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42796856	42796856	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	202	610	0	ENST00000575354.2:c.3314C>G	p.Ser1105Ter	p.S1105*	ENST00000575354	NM_015125.3	1105	tCa/tGa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41076903	41076903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	132	640	0	ENST00000373198.4:c.1517G>T	p.Trp506Leu	p.W506L	ENST00000373198	NM_133170.3	506	tGg/tTg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41514546	41514546	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	110	488	1	ENST00000373198.4:c.115A>C	p.Ser39Arg	p.S39R	ENST00000373198	NM_133170.3	39	Agc/Cgc					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46256423	46256423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1277	232	971	0	ENST00000371998.3:c.651G>T	p.Met217Ile	p.M217I	ENST00000371998		217	atG/atT					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1321349	1321349	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	82	532	0	ENST00000381566.1:c.406G>T	p.Val136Leu	p.V136L	ENST00000381566		136	Gtg/Ttg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11152106	11152106	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	189	558	0	ENST00000344626.4:c.4294del	p.Asp1432ThrfsTer31	p.D1432Tfs*31	ENST00000344626	NM_003072.3	1432	Gac/ac					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148529793	148529794	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	C			P-0006895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	102	507	0	ENST00000320356.2:c.295_296delinsG	p.Lys99GlyfsTer3	p.K99Gfs*3	ENST00000320356	NM_004456.4	99	AAg/Gg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	144	478	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256532	115256532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	92	567	0	ENST00000369535.4:c.179G>T	p.Gly60Val	p.G60V	ENST00000369535	NM_002524.4	60	gGa/gTa					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138374269	138374269	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	76	635	1	ENST00000289153.2:c.3175T>G	p.Trp1059Gly	p.W1059G	ENST00000289153	NM_006219.2	1059	Tgg/Ggg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944562	40944562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	51	341	1	ENST00000373198.4:c.1940C>T	p.Ser647Leu	p.S647L	ENST00000373198	NM_133170.3	647	tCg/tTg					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71021734	71021734	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	116	660	0	ENST00000318789.4:c.1624del	p.Gln542LysfsTer57	p.Q542Kfs*57	ENST00000318789	NM_032682.5	542	Caa/aa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174641	112174641	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	93	696	0	ENST00000257430.4:c.3350del	p.Ser1117LeufsTer9	p.S1117Lfs*9	ENST00000257430	NM_000038.5	1117	tCt/tt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	510	379	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178921566	178921566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	181	295	0	ENST00000263967.3:c.1048G>A	p.Asp350Asn	p.D350N	ENST00000263967	NM_006218.2	350	Gac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	378	630	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604741	48604749	+	inframe_deletion	In_Frame_Del	DEL	ACCTTGCTG	ACCTTGCTG	-			P-0005652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	243	532	0	ENST00000342988.3:c.1563_1571del	p.Pro522_Trp524del	p.P522_W524del	ENST00000342988	NM_005359.5	521	acACCTTGCTGg/acg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	36	214	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27089776	27089776	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	12	120	0	ENST00000324856.7:c.2732G>T	p.Arg911Met	p.R911M	ENST00000324856	NM_006015.4	911	aGg/aTg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120459131	120459131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	60	358	1	ENST00000256646.2:c.6214C>T	p.Pro2072Ser	p.P2072S	ENST00000256646	NM_024408.3	2072	Cca/Tca					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120469204	120469204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	59	344	0	ENST00000256646.2:c.3923G>T	p.Cys1308Phe	p.C1308F	ENST00000256646	NM_024408.3	1308	tGt/tTt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248521	212248521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1309	70	574	1	ENST00000342788.4:c.3746C>A	p.Pro1249His	p.P1249H	ENST00000342788	NM_005235.2	1249	cCt/cAt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212285253	212285253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	57	415	0	ENST00000342788.4:c.3048G>T	p.Met1016Ile	p.M1016I	ENST00000342788	NM_005235.2	1016	atG/atT					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134968231	134968231	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	77	446	0	ENST00000398015.3:c.2744C>T	p.Thr915Ile	p.T915I	ENST00000398015	NM_004441.4	915	aCc/aTc					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186501407	186501407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1872	114	881	1	ENST00000323963.5:c.8G>T	p.Gly3Val	p.G3V	ENST00000323963		3	gGt/gTt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55948178	55948178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1244	81	456	0	ENST00000263923.4:c.3793G>C	p.Ala1265Pro	p.A1265P	ENST00000263923	NM_002253.2	1265	Gcc/Ccc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66213888	66213888	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	68	497	0	ENST00000273854.3:c.2542G>T	p.Glu848Ter	p.E848*	ENST00000273854	NM_004439.5	848	Gaa/Taa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32171998	32171998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	72	375	0	ENST00000375023.3:c.3034G>T	p.Asp1012Tyr	p.D1012Y	ENST00000375023	NM_004557.3	1012	Gac/Tac					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2946426	2946426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	67	439	0	ENST00000396946.4:c.3311G>T	p.Arg1104Leu	p.R1104L	ENST00000396946	NM_032415.4	1104	cGg/cTg					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116395440	116395440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	101	459	0	ENST00000397752.3:c.1733G>A	p.Gly578Glu	p.G578E	ENST00000397752	NM_000245.2	578	gGg/gAg					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77070002	77070002	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	80	418	1	ENST00000356341.3:c.538G>T	p.Asp180Tyr	p.D180Y	ENST00000356341	NM_002576.4	180	Gat/Tat					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108160456	108160456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1171	97	448	0	ENST00000278616.4:c.4364G>T	p.Ser1455Ile	p.S1455I	ENST00000278616	NM_000051.3	1455	aGt/aTt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108183145	108183145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	66	343	1	ENST00000278616.4:c.5926G>T	p.Ala1976Ser	p.A1976S	ENST00000278616	NM_000051.3	1976	Gca/Tca					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108205706	108205706	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	50	279	0	ENST00000278616.4:c.8021C>G	p.Thr2674Arg	p.T2674R	ENST00000278616	NM_000051.3	2674	aCa/aGa					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18435522	18435522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	85	318	0	ENST00000266497.5:c.507A>G	p.Ile169Met	p.I169M	ENST00000266497		169	atA/atG					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133202852	133202852	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	94	393	0	ENST00000320574.5:c.6382G>T	p.Asp2128Tyr	p.D2128Y	ENST00000320574	NM_006231.2	2128	Gac/Tac					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29012410	29012410	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	66	435	0	ENST00000282397.4:c.461T>G	p.Leu154Arg	p.L154R	ENST00000282397	NM_002019.4	154	cTc/cGc					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41240223	41240223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	16	135	0	ENST00000379561.5:c.127G>C	p.Ala43Pro	p.A43P	ENST00000379561	NM_002015.3	43	Gcg/Ccg					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060907	38060907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	35	362	0	ENST00000250448.2:c.1082G>T	p.Ser361Ile	p.S361I	ENST00000250448	NM_004496.3	361	aGc/aTc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042669	42042669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1614	138	778	2	ENST00000219905.7:c.6864G>T	p.Lys2288Asn	p.K2288N	ENST00000219905	NM_001164273.1	2288	aaG/aaT					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2129625	2129625	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	68	564	0	ENST00000219476.3:c.3352C>T	p.Gln1118Ter	p.Q1118*	ENST00000219476	NM_000548.3	1118	Cag/Tag					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37687082	37687082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	68	516	0	ENST00000447079.4:c.3986C>A	p.Ser1329Tyr	p.S1329Y	ENST00000447079	NM_015083.1	1329	tCc/tAc					NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40451768	40451768	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1216	86	751	3	ENST00000345506.4:c.551-1G>T		p.X184_splice	ENST00000345506	NM_003152.3	184						NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4117590	4117590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	41	312	0	ENST00000262948.5:c.130C>G	p.Leu44Val	p.L44V	ENST00000262948	NM_030662.3	44	Ctg/Gtg					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46268710	46268710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1335	80	719	2	ENST00000371998.3:c.2995G>T	p.Gly999Cys	p.G999C	ENST00000371998		999	Ggc/Tgc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76875910	76875910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1268	86	662	0	ENST00000373344.5:c.5225G>T	p.Arg1742Met	p.R1742M	ENST00000373344	NM_000489.3	1742	aGg/aTg					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185167840	185167841	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	44	380	0	ENST00000265026.3:c.1164_1165del	p.Gln388HisfsTer5	p.Q388Hfs*5	ENST00000265026	NM_004721.4	388	cAG/c					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46231438	46231438	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	113	376	1	ENST00000334344.6:c.1279del	p.Glu427LysfsTer13	p.E427Kfs*13	ENST00000334344	NM_152641.2	426	acG/ac					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0007171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	36	421	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	20	414	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	100	296	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0004762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	110	289	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0004762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	117	331	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc					NEWRECORD																																																																									
MYD88	0	MSKCC	GRCh37	3	38182709	38182709	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	87	511	0	ENST00000396334.3:c.862G>A	p.Asp288Asn	p.D288N	ENST00000396334	NM_002468.4	288	Gac/Aac					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44732894	44732894	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	199	228	0	ENST00000377967.4:c.97G>T	p.Glu33Ter	p.E33*	ENST00000377967	NM_021140.2	33	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	154	329	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25458581	25458581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	85	363	0	ENST00000264709.3:c.2592G>A	p.Met864Ile	p.M864I	ENST00000264709	NM_175629.2	864	atG/atA					NEWRECORD																																																																									
EED	0	MSKCC	GRCh37	11	85968615	85968615	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	79	380	0	ENST00000263360.6:c.611A>G	p.Asn204Ser	p.N204S	ENST00000263360	NM_003797.3	204	aAt/aGt					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426531	47426531	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0006916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	87	424	0	ENST00000377045.4:c.873+1G>T		p.X291_splice	ENST00000377045	NM_001654.4	291						NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	286	371	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589663	67589663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	98	240	0	ENST00000274335.5:c.1425+1G>A		p.X475_splice	ENST00000274335		475						NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760997	133760997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	325	429	0	ENST00000318560.5:c.3320G>A	p.Gly1107Asp	p.G1107D	ENST00000318560	NM_005157.4	1107	gGt/gAt					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73336068	73336068	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	155	331	0	ENST00000377767.4:c.2335A>T	p.Ile779Phe	p.I779F	ENST00000377767	NM_014953.3	779	Att/Ttt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29486102	29486102	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009646-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	276	427	0	ENST00000358273.4:c.279T>A	p.Cys93Ter	p.C93*	ENST00000358273	NM_001042492.2	93	tgT/tgA					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27778200	27778200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1885	411	1177	1	ENST00000369163.2:c.349C>T	p.Arg117Trp	p.R117W	ENST00000369163	NM_003536.2	117	Cgg/Tgg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68867274	68867274	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	136	404	0	ENST00000261769.5:c.2521G>T	p.Glu841Ter	p.E841*	ENST00000261769	NM_004360.3	841	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578284	7578297	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCAGACCTAAGAGC	CCAGACCTAAGAGC	-			P-0005864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	134	452	1	ENST00000269305.4:c.560-8_565del		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	135	350	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	177	551	1	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26101034	26101034	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0005391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	461	551	0	ENST00000435504.4:c.57+1G>C		p.X19_splice	ENST00000435504		19						NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32937426	32937426	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	106	366	0	ENST00000380152.3:c.8087T>A	p.Leu2696Ter	p.L2696*	ENST00000380152		2696	tTg/tAg					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67482864	67482864	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	193	325	0	ENST00000327367.4:c.1268G>T	p.Ser423Ile	p.S423I	ENST00000327367	NM_005902.3	423	aGt/aTt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425755	49425755	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	126	435	0	ENST00000301067.7:c.12733del	p.Glu4245SerfsTer33	p.E4245Sfs*33	ENST00000301067	NM_003482.3	4245	Gag/ag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	258	431	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	113	503	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0006398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	164	419	0	ENST00000304494.5:c.149A>G	p.Gln50Arg	p.Q50R	ENST00000304494	NM_000077.4	50	cAg/cGg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0006398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	164	419	0	ENST00000304494.5:c.149A>G	p.Gln50Arg	p.Q50R	ENST00000304494	NM_000077.4	50	cAg/cGg					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2223315	2223315	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	112	441	0	ENST00000326181.6:c.927C>A	p.Asp309Glu	p.D309E	ENST00000326181	NM_032271.2	309	gaC/gaA					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022915	31022915	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	99	514	0	ENST00000375687.4:c.2400T>G	p.Asp800Glu	p.D800E	ENST00000375687	NM_015338.5	800	gaT/gaG					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76907626	76907626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	159	612	0	ENST00000373344.5:c.4535G>A	p.Arg1512His	p.R1512H	ENST00000373344	NM_000489.3	1512	cGt/cAt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	279	473	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225338988	225338988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	82	519	0	ENST00000264414.4:c.2281C>T	p.Arg761Cys	p.R761C	ENST00000264414	NM_003590.4	761	Cgc/Tgc					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36939177	36939177	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	40	557	0	ENST00000361632.4:c.532G>C	p.Val178Leu	p.V178L	ENST00000361632		178	Gtg/Ctg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88576120	88576120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147160868		P-0008178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	54	405	0	ENST00000360948.2:c.1553G>A	p.Arg518His	p.R518H	ENST00000360948	NM_001012338.2	518	cGt/cAt					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15296167	15296167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	23	362	0	ENST00000263388.2:c.2197C>A	p.Leu733Met	p.L733M	ENST00000263388	NM_000435.2	733	Ctg/Atg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27056342	27056343	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0005161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	305	253	0	ENST00000324856.7:c.1338_1339delTT	p.Gln449AlafsTer173	p.Q449Afs*173	ENST00000324856	NM_006015.4	446	tcTTat/tcat					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593586	55593588	+	inframe_deletion	In_Frame_Del	DEL	CCA	CCA	-			P-0006320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	748	520	0	ENST00000288135.5:c.1652_1654del	p.Pro551_Met552delinsLeu	p.P551_M552delinsL	ENST00000288135	NM_000222.2	551	cCCAtg/ctg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			315	47	101	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			97	458	298	2	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			247	116	147	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38946624	38946624	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			298	770	182	0	ENST00000357387.3:c.4345A>T	p.Asn1449Tyr	p.N1449Y	ENST00000357387	NM_152756.3	1449	Aac/Tac					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108178687	108178687	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			288	76	77	0	ENST00000278616.4:c.5738T>C	p.Val1913Ala	p.V1913A	ENST00000278616	NM_000051.3	1913	gTg/gCg					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	430210	430210	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			135	848	302	0	ENST00000399788.2:c.2492A>T	p.Gln831Leu	p.Q831L	ENST00000399788	NM_001042603.1	831	cAa/cTa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030378	49030378	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			80	542	210	0	ENST00000267163.4:c.1853C>A	p.Ser618Ter	p.S618*	ENST00000267163	NM_000321.2	618	tCa/tAa					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39755443	39755443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			441	199	307	0	ENST00000288319.7:c.1322C>T	p.Thr441Ile	p.T441I	ENST00000288319	NM_182918.3	441	aCa/aTa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41572318	41572318	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003935-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			264	285	322	0	ENST00000263253.7:c.4847A>T	p.Asp1616Val	p.D1616V	ENST00000263253	NM_001429.3	1616	gAt/gTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0008901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	188	366	1	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72831831	72831831	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	328	942	0	ENST00000268489.5:c.4750C>T	p.Gln1584Ter	p.Q1584*	ENST00000268489	NM_006885.3	1584	Cag/Tag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914395	32914395	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	330	1013	0	ENST00000380152.3:c.5903C>G	p.Ser1968Ter	p.S1968*	ENST00000380152		1968	tCa/tGa					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45656786	45656794	+	inframe_deletion	In_Frame_Del	DEL	CCTGGAATC	CCTGGAATC	-			P-0008901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	44	314	0	ENST00000407780.3:c.362_370del	p.Gly121_Gln123del	p.G121_Q123del	ENST00000407780	NM_001283052.1	121	gGATTCCAGGag/gag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175490	112175490	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	188	518	0	ENST00000257430.4:c.4199C>A	p.Ser1400Ter	p.S1400*	ENST00000257430	NM_000038.5	1400	tCg/tAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	273	578	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944829	31944829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	793	885	0	ENST00000340398.3:c.272C>T	p.Ala91Val	p.A91V	ENST00000340398	NM_001013699.2	91	gCg/gTg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467650	66467650	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	79	454	0	ENST00000273854.3:c.619A>T	p.Lys207Ter	p.K207*	ENST00000273854	NM_004439.5	207	Aaa/Taa					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125503225	125503225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	79	447	0	ENST00000428830.2:c.592C>T	p.Leu198Phe	p.L198F	ENST00000428830	NM_001114121.2	198	Ctt/Ttt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32937434	32937434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	104	612	1	ENST00000380152.3:c.8095A>G	p.Asn2699Asp	p.N2699D	ENST00000380152		2699	Aat/Gat					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88727490	88727490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	164	603	2	ENST00000360948.2:c.289G>A	p.Val97Met	p.V97M	ENST00000360948	NM_001012338.2	97	Gtg/Atg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1223055	1223055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	135	741	2	ENST00000326873.7:c.992G>A	p.Arg331Gln	p.R331Q	ENST00000326873	NM_000455.4	331	cGg/cAg					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16086193	16086195	+	missense_variant	Missense_Mutation	ONP	AAA	AAA	TAT			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	64	456	0	ENST00000281043.3:c.1369_1371delinsTAT	p.Lys457Tyr	p.K457Y	ENST00000281043	NM_005378.4	457	AAA/TAT					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176637555	176637556	+	missense_variant	Missense_Mutation	DNP	GC	GC	CT			P-0005430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	173	492	0	ENST00000439151.2:c.2155_2156delinsCT	p.Ala719Leu	p.A719L	ENST00000439151	NM_022455.4	719	GCa/CTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	218	913	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2136231	2136231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	115	534	0	ENST00000219476.3:c.4700G>A	p.Gly1567Asp	p.G1567D	ENST00000219476	NM_000548.3	1567	gGc/gAc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27107088	27107091	+	frameshift_variant	Frame_Shift_Del	DEL	GGCT	GGCT	-			P-0007905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	147	361	0	ENST00000324856.7:c.6700_6703del	p.Ala2234ProfsTer32	p.A2234Pfs*32	ENST00000324856	NM_006015.4	2233	cgGGCT/cg					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128051206	128051232	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAACCGCTTCCTGAGGGTCGTTCCC	GGGAACCGCTTCCTGAGGGTCGTTCCC	A			P-0007905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	97	807	0	ENST00000285398.2:c.91_117delinsT	p.Gly31PhefsTer9	p.G31Ffs*9	ENST00000285398	NM_000122.1	31	GGGAACGACCCTCAGGAAGCGGTTCCC/T					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295168	1295169	+	upstream_gene_variant	5'Flank	DNP	CG	CG	TC			P-0007905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	58	195	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	50	351	2	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0006729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	33	284	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123181301	123181301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	53	576	0	ENST00000218089.9:c.765G>C	p.Met255Ile	p.M255I	ENST00000218089	NM_001042749.1	255	atG/atC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006729-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	95	422	0	ENST00000269305.4:c.838delA	p.Arg280GlufsTer65	p.R280Efs*65	ENST00000269305	NM_001126112.2	280	Aga/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	162	379	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55141128	55141128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	199	486	0	ENST00000257290.5:c.1774G>A	p.Gly592Arg	p.G592R	ENST00000257290	NM_006206.4	592	Gga/Aga					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528767	157528767	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	240	470	0	ENST00000346085.5:c.6492G>C	p.Glu2164Asp	p.E2164D	ENST00000346085	NM_020732.3	2164	gaG/gaC					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81340796	81340796	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0009915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	310	717	0	ENST00000222390.5:c.1444+1G>C		p.X482_splice	ENST00000222390	NM_000601.4	482						NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72830013	72830013	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	564	1041	0	ENST00000268489.5:c.6568A>T	p.Lys2190Ter	p.K2190*	ENST00000268489	NM_006885.3	2190	Aag/Tag					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63532630	63532630	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	213	412	0	ENST00000307078.5:c.1949G>T	p.Arg650Leu	p.R650L	ENST00000307078	NM_004655.3	650	cGc/cTc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176665378	176665378	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	246	596	0	ENST00000439151.2:c.4065del	p.Leu1356TrpfsTer16	p.L1356Wfs*16	ENST00000439151	NM_022455.4	1354	ggC/gg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15271699	15271699	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	415	901	0	ENST00000263388.2:c.6740del	p.Pro2247HisfsTer82	p.P2247Hfs*82	ENST00000263388	NM_000435.2	2247	cCa/ca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	194	655	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099947	27099947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	146	490	0	ENST00000324856.7:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000324856	NM_006015.4	1276	Cga/Tga					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473779	67473779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	149	401	0	ENST00000327367.4:c.859C>T	p.Arg287Trp	p.R287W	ENST00000327367	NM_005902.3	287	Cgg/Tgg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76940012	76940012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	150	326	0	ENST00000373344.5:c.736C>T	p.Arg246Cys	p.R246C	ENST00000373344	NM_000489.3	246	Cgc/Tgc					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17350503	17350503	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201517260		P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	165	508	2	ENST00000375499.3:c.607G>A	p.Gly203Arg	p.G203R	ENST00000375499	NM_003000.2	203	Gga/Aga					NEWRECORD																																																																									
EIF4E	0	MSKCC	GRCh37	4	99823108	99823108	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	59	486	0	ENST00000280892.6:c.104C>T	p.Pro35Leu	p.P35L	ENST00000280892	NM_001130678.1	35	cCg/cTg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175322	112175322	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	105	325	0	ENST00000257430.4:c.4031C>A	p.Ser1344Ter	p.S1344*	ENST00000257430	NM_000038.5	1344	tCa/tAa					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38271216	38271216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009149-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	74	259	0	ENST00000425967.3:c.2492C>T	p.Pro831Leu	p.P831L	ENST00000425967	NM_001174067.1	831	cCg/cTg					NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36820008	36820008	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	215	366	0	ENST00000373129.3:c.580G>A	p.Val194Met	p.V194M	ENST00000373129	NM_032017.1	194	Gtg/Atg					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248468	59248468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	37	304	0	ENST00000371222.2:c.275C>A	p.Pro92Gln	p.P92Q	ENST00000371222	NM_002228.3	92	cCg/cAg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162932	47162932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	31	321	0	ENST00000409792.3:c.3194G>A	p.Arg1065His	p.R1065H	ENST00000409792	NM_014159.6	1065	cGt/cAt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187557196	187557196	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	30	245	0	ENST00000441802.2:c.4166T>C	p.Leu1389Pro	p.L1389P	ENST00000441802	NM_005245.3	1389	cTt/cCt					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150023075	150023075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	46	378	2	ENST00000253339.5:c.188G>A	p.Arg63Gln	p.R63Q	ENST00000253339		63	cGa/cAa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139399389	139399389	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	26	297	0	ENST00000277541.6:c.4754T>C	p.Leu1585Pro	p.L1585P	ENST00000277541	NM_017617.3	1585	cTg/cCg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108200958	108200958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	30	203	0	ENST00000278616.4:c.7325A>G	p.Gln2442Arg	p.Q2442R	ENST00000278616	NM_000051.3	2442	cAg/cGg					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	461439	461439	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	153	348	0	ENST00000399788.2:c.1081T>C	p.Tyr361His	p.Y361H	ENST00000399788	NM_001042603.1	361	Tat/Cat					NEWRECORD																																																																									
RAD52	0	MSKCC	GRCh37	12	1023111	1023111	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	210	349	0	ENST00000358495.3:c.1144A>C	p.Lys382Gln	p.K382Q	ENST00000358495	NM_134424.2	382	Aaa/Caa					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57857835	57857835	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	72	478	0	ENST00000228682.2:c.154A>G	p.Ser52Gly	p.S52G	ENST00000228682	NM_005269.2	52	Agt/Ggt					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29004242	29004242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	127	296	1	ENST00000282397.4:c.1051C>T	p.Arg351Trp	p.R351W	ENST00000282397	NM_002019.4	351	Cgg/Tgg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941741	48941741	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	15	149	0	ENST00000267163.4:c.1049+2T>C		p.X350_splice	ENST00000267163	NM_000321.2	350						NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061532	38061532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	22	182	0	ENST00000250448.2:c.457G>A	p.Ala153Thr	p.A153T	ENST00000250448	NM_004496.3	153	Gcg/Acg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2129586	2129586	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	40	363	0	ENST00000219476.3:c.3313A>G	p.Thr1105Ala	p.T1105A	ENST00000219476	NM_000548.3	1105	Acc/Gcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	292	231	1	ENST00000269305.4:c.536A>C	p.His179Pro	p.H179P	ENST00000269305	NM_001126112.2	179	cAt/cCt					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17945728	17945728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	36	311	0	ENST00000458235.1:c.2132T>C	p.Phe711Ser	p.F711S	ENST00000458235	NM_000215.3	711	tTc/tCc					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15840905	15840905	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	45	231	0	ENST00000307771.7:c.989A>G	p.His330Arg	p.H330R	ENST00000307771	NM_005089.3	330	cAt/cGt					NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	42	354	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119145604	119145604	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	41	298	2	ENST00000264033.4:c.815del	p.Leu272Ter	p.L272*	ENST00000264033	NM_005188.3	270	gcT/gc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139390649	139390650	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	376	483	0	ENST00000277541.6:c.7541_7542delCT	p.Pro2514ArgfsTer4	p.P2514Rfs*4	ENST00000277541	NM_017617.3	2514	cCT/c					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18491390	18491390	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006772-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	39	230	0	ENST00000266497.5:c.1309del	p.Ile437TyrfsTer5	p.I437Yfs*5	ENST00000266497		435	Aaa/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	330	624	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	132	371	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59247958	59247958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	189	542	0	ENST00000371222.2:c.785A>G	p.Asn262Ser	p.N262S	ENST00000371222	NM_002228.3	262	aAc/aGc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436320	110436320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	34	105	0	ENST00000375856.3:c.2081C>T	p.Ala694Val	p.A694V	ENST00000375856	NM_003749.2	694	gCc/gTc					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89882964	89882964	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	28	203	0	ENST00000389301.3:c.60G>T	p.Arg20Ser	p.R20S	ENST00000389301	NM_000135.2	20	agG/agT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	176	431	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610427	10610427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	158	441	0	ENST00000171111.5:c.283G>A	p.Ala95Thr	p.A95T	ENST00000171111	NM_203500.1	95	Gcc/Acc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112179437	112179437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	276	679	0	ENST00000257430.4:c.8146G>T	p.Val2716Leu	p.V2716L	ENST00000257430	NM_000038.5	2716	Gtg/Ttg					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125514425	125514425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	158	470	1	ENST00000428830.2:c.1120G>T	p.Val374Phe	p.V374F	ENST00000428830	NM_001114121.2	374	Gtc/Ttc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28885775	28885775	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	168	563	0	ENST00000282397.4:c.3587A>G	p.Glu1196Gly	p.E1196G	ENST00000282397	NM_002019.4	1196	gAa/gGa					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2226101	2226101	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	211	511	0	ENST00000326181.6:c.1798G>T	p.Gly600Cys	p.G600C	ENST00000326181	NM_032271.2	600	Ggc/Tgc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039648	47039648	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	180	566	0	ENST00000329236.7:c.866A>C	p.His289Pro	p.H289P	ENST00000329236	NM_001204466.1	289	cAc/cCc					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46123664	46123664	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	176	454	1	ENST00000334344.6:c.47del	p.Gly16AspfsTer42	p.G16Dfs*42	ENST00000334344	NM_152641.2	15	aaG/aa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221222	1221226	+	frameshift_variant	Frame_Shift_Del	DEL	ACCAC	ACCAC	G			P-0009590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	206	668	0	ENST00000326873.7:c.745_749delinsG	p.Thr249GlyfsTer37	p.T249Gfs*37	ENST00000326873	NM_000455.4	249	ACCACg/Gg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009361-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	117	439	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	383	527	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575150	48575150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	216	391	0	ENST00000342988.3:c.344G>A	p.Cys115Tyr	p.C115Y	ENST00000342988	NM_005359.5	115	tGt/tAt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1633	534	571	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0005553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	1009	548	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16075166	16075166	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	474	449	0	ENST00000268712.3:c.386T>C	p.Leu129Ser	p.L129S	ENST00000268712	NM_006311.3	129	tTa/tCa					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42839668	42839668	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	83	615	1	ENST00000398585.3:c.1571A>T	p.Gln524Leu	p.Q524L	ENST00000398585	NM_001135099.1	524	cAa/cTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579531	7579531	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	496	583	0	ENST00000269305.4:c.156delA	p.Gln52HisfsTer71	p.Q52Hfs*71	ENST00000269305	NM_001126112.2	52	caA/ca					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	150	374	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	78	374	0	ENST00000269305.4:c.314G>A	p.Gly105Asp	p.G105D	ENST00000269305	NM_001126112.2	105	gGc/gAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0009957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	118	420	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185161355	185161355	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	123	481	0	ENST00000265026.3:c.782C>G	p.Thr261Arg	p.T261R	ENST00000265026	NM_004721.4	261	aCa/aGa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	159	275	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041007	47041007	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	58	164	0	ENST00000329236.7:c.1303G>T	p.Glu435Ter	p.E435*	ENST00000329236	NM_001204466.1	435	Gag/Tag					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225346609	225346609	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0009442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	64	328	0	ENST00000264414.4:c.2029G>T	p.Val677Phe	p.V677F	ENST00000264414	NM_003590.4	677	Gtt/Ttt					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55154995	55154995	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	94	379	1	ENST00000257290.5:c.2704G>A	p.Asp902Asn	p.D902N	ENST00000257290	NM_006206.4	902	Gat/Aat					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405044	70405044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	78	357	0	ENST00000373644.4:c.2558G>T	p.Gly853Val	p.G853V	ENST00000373644	NM_030625.2	853	gGt/gTt					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28913338	28913338	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	84	456	0	ENST00000282397.4:c.2455A>T	p.Lys819Ter	p.K819*	ENST00000282397	NM_002019.4	819	Aag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	385	454	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	256	277	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578189	7578189	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0008036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	160	451	0	ENST00000269305.4:c.660T>G	p.Tyr220Ter	p.Y220*	ENST00000269305	NM_001126112.2	220	taT/taG					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56480350	56480350	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147905731		P-0008036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	62	294	1	ENST00000267101.3:c.457G>A	p.Asp153Asn	p.D153N	ENST00000267101	NM_001982.3	153	Gat/Aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	247	340	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	146	316	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29001303	29001303	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201407326		P-0008551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	133	328	0	ENST00000282397.4:c.1429G>A	p.Glu477Lys	p.E477K	ENST00000282397	NM_002019.4	477	Gaa/Aaa					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49933744	49933744	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	75	605	2	ENST00000296474.3:c.2533C>T	p.Arg845Ter	p.R845*	ENST00000296474	NM_002447.2	845	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173599	112173599	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	118	379	0	ENST00000257430.4:c.2308del	p.Ser770GlnfsTer7	p.S770Qfs*7	ENST00000257430	NM_000038.5	770	Tca/ca					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0007556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	304	518	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52637700	52637700	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	137	387	0	ENST00000394830.3:c.2616delT	p.Phe872LeufsTer43	p.F872Lfs*43	ENST00000394830	NM_018313.4	872	ttT/tt					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8074357	8074357	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	166	624	1	ENST00000377482.5:c.302A>T	p.Glu101Val	p.E101V	ENST00000377482	NM_018948.3	101	gAa/gTa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47059230	47059230	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0007556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	107	217	0	ENST00000409792.3:c.7432-1G>T		p.X2478_splice	ENST00000409792	NM_014159.6	2478						NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49440175	49440175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	192	319	0	ENST00000301067.7:c.4451C>T	p.Ser1484Phe	p.S1484F	ENST00000301067	NM_003482.3	1484	tCc/tTc					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21565442	21565442	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	66	597	0	ENST00000382592.4:c.444G>C	p.Gln148His	p.Q148H	ENST00000382592	NM_014572.2	148	caG/caC					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21565472	21565472	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	70	579	0	ENST00000382592.4:c.414G>C	p.Lys138Asn	p.K138N	ENST00000382592	NM_014572.2	138	aaG/aaC					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66727517	66727517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	327	364	0	ENST00000307102.5:c.233A>G	p.Asn78Ser	p.N78S	ENST00000307102	NM_002755.3	78	aAt/aGt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183742	10183742	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	336	313	0	ENST00000256474.2:c.213del	p.Ser72ProfsTer87	p.S72Pfs*87	ENST00000256474	NM_000551.3	71	Ccc/cc					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0006043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	37	309	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	250	562	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0005971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	66	405	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161771163	161771163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	88	693	0	ENST00000366898.1:c.1366G>A	p.Val456Ile	p.V456I	ENST00000366898	NM_004562.2	456	Gtc/Atc					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89347309	89347310	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	106	1200	0	ENST00000301030.4:c.5640_5641delinsAA	p.Gly1881Ser	p.G1881S	ENST00000301030	NM_001256183.1	1880	gaGGgc/gaAAgc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941694	48941694	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0009360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	208	356	0	ENST00000267163.4:c.1004T>G	p.Leu335Ter	p.L335*	ENST00000267163	NM_000321.2	335	tTa/tGa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76890170	76890170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	263	525	2	ENST00000373344.5:c.4724G>T	p.Cys1575Phe	p.C1575F	ENST00000373344	NM_000489.3	1575	tGc/tTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	263	429	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174784	112174784	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	101	449	1	ENST00000257430.4:c.3493A>T	p.Lys1165Ter	p.K1165*	ENST00000257430	NM_000038.5	1165	Aaa/Taa					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99185133	99185133	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	239	398	2	ENST00000074304.5:c.2533+2T>C		p.X845_splice	ENST00000074304	NM_001134224.1	845						NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76813002	76813002	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	263	547	0	ENST00000373344.5:c.6619C>T	p.Leu2207Phe	p.L2207F	ENST00000373344	NM_000489.3	2207	Ctt/Ttt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112157627	112157628	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0006933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	119	485	0	ENST00000257430.4:c.1354_1355del	p.Val452SerfsTer7	p.V452Sfs*7	ENST00000257430	NM_000038.5	449	gcTGtg/gctg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	90	458	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	44	403	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248369	212248369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	60	351	0	ENST00000342788.4:c.3898C>A	p.Pro1300Thr	p.P1300T	ENST00000342788	NM_005235.2	1300	Cct/Act					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412361	63412361	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	73	304	0	ENST00000330258.3:c.806A>T	p.His269Leu	p.H269L	ENST00000330258	NM_152424.3	269	cAt/cTt					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91293119	91293119	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	50	274	0	ENST00000355112.3:c.623del	p.Leu208CysfsTer11	p.L208Cfs*11	ENST00000355112	NM_000057.2	207	gaT/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	314	448	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187627818	187627818	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149283579		P-0008330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	366	649	0	ENST00000441802.2:c.3164C>T	p.Thr1055Met	p.T1055M	ENST00000441802	NM_005245.3	1055	aCg/aTg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	43	201	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178921548	178921548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	120	321	0	ENST00000263967.3:c.1030G>A	p.Val344Met	p.V344M	ENST00000263967	NM_006218.2	344	Gtg/Atg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18534717	18534717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	80	449	0	ENST00000266497.5:c.1775C>G	p.Ser592Cys	p.S592C	ENST00000266497		592	tCt/tGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	159	523	0	ENST00000269305.4:c.428T>G	p.Val143Gly	p.V143G	ENST00000269305	NM_001126112.2	143	gTg/gGg					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39763596	39763596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	126	433	1	ENST00000288319.7:c.856C>T	p.Gln286Ter	p.Q286*	ENST00000288319	NM_182918.3	286	Cag/Tag					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39931643	39931643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	217	557	2	ENST00000378444.4:c.2956G>A	p.Ala986Thr	p.A986T	ENST00000378444	NM_001123385.1	986	Gca/Aca					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123199747	123199747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	163	568	0	ENST00000218089.9:c.2047G>A	p.Asp683Asn	p.D683N	ENST00000218089	NM_001042749.1	683	Gat/Aat					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717749	89717749	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	59	231	0	ENST00000371953.3:c.775del	p.His259ThrfsTer7	p.H259Tfs*7	ENST00000371953	NM_000314.4	258	ttC/tt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0000690-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			190	113	182	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000690-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			463	103	268	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89448571	89448571	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000690-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			598	123	404	0	ENST00000336596.2:c.1535G>A	p.Arg512Gln	p.R512Q	ENST00000336596	NM_005233.5	512	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	427	663	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156845344	156845344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	238	900	0	ENST00000524377.1:c.1387G>T	p.Ala463Ser	p.A463S	ENST00000524377	NM_002529.3	463	Gcc/Tcc					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25466816	25466816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	330	636	0	ENST00000264709.3:c.1887G>T	p.Glu629Asp	p.E629D	ENST00000264709	NM_175629.2	629	gaG/gaT					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190738275	190738275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	141	247	0	ENST00000441310.2:c.2527C>T	p.Pro843Ser	p.P843S	ENST00000441310	NM_000534.4	843	Cca/Tca					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55603391	55603391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	138	677	0	ENST00000288135.5:c.2747C>A	p.Thr916Lys	p.T916K	ENST00000288135	NM_000222.2	916	aCa/aAa					NEWRECORD																																																																									
VEGFA	0	MSKCC	GRCh37	6	43748573	43748573	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	587	966	1	ENST00000523873.1:c.527G>A	p.Trp176Ter	p.W176*	ENST00000523873		176	tGg/tAg					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13940369	13940369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	158	287	0	ENST00000405192.2:c.1137G>C	p.Met379Ile	p.M379I	ENST00000405192	NM_001163147.1	379	atG/atC					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81386620	81386620	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	123	252	0	ENST00000222390.5:c.368-1G>T		p.X123_splice	ENST00000222390	NM_000601.4	123						NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106520000	106520000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	246	521	0	ENST00000359195.3:c.2428C>G	p.Pro810Ala	p.P810A	ENST00000359195	NM_002649.2	810	Cca/Gca					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108137989	108137989	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	240	719	1	ENST00000278616.4:c.2558C>T	p.Ser853Leu	p.S853L	ENST00000278616	NM_000051.3	853	tCa/tTa					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91304138	91304138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	287	559	2	ENST00000355112.3:c.1535G>A	p.Gly512Glu	p.G512E	ENST00000355112	NM_000057.2	512	gGa/gAa					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58740365	58740365	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	467	848	0	ENST00000305921.3:c.1270G>T	p.Glu424Ter	p.E424*	ENST00000305921	NM_003620.3	424	Gag/Tag					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29095922	29095922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	133	450	0	ENST00000328354.6:c.912G>T	p.Met304Ile	p.M304I	ENST00000328354	NM_007194.3	304	atG/atT					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921460	39921460	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	356	764	0	ENST00000378444.4:c.4360C>T	p.Arg1454Trp	p.R1454W	ENST00000378444	NM_001123385.1	1454	Cgg/Tgg					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47422458	47422458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	459	1035	0	ENST00000377045.4:c.92C>A	p.Thr31Lys	p.T31K	ENST00000377045	NM_001654.4	31	aCg/aAg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29553520	29553520	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	309	587	1	ENST00000358273.4:c.2071del	p.Leu691CysfsTer57	p.L691Cfs*57	ENST00000358273	NM_001042492.2	690	gCc/gc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3788615	3788617	+	missense_variant	Missense_Mutation	ONP	TGC	TGC	AGA			P-0005732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	330	575	0	ENST00000262367.5:c.4337_4339delinsTCT	p.Arg1446_Thr1447delinsLeuSer	p.R1446_T1447delinsLS	ENST00000262367	NM_004380.2	1446	cGCAca/cTCTca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	249	562	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	205	417	1	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0007679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	488	523	2	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39930579	39930910	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAGTATCTATATATAAGTAGTCACACATTCTTTATTCATAAAGTCATGTGTATATAGATATATATGCGATGTGTATGTATATCCACACATACACTATTGCATACAGACAGACATTCTCTTTTGAAGGTAAATAAAACAAAACGAAAACACAACGCAAAGAAAACAAAACAAAAACACAACAGAAAAGAAACAAAATACACAATGAATAAAGACGACCATGGCCCACAAACTTCCCTTTGTATATTTGGAAATGAAATTTAACTCAAAAGGTTTATGTAAGATTCTAGTAATAAAAATTTGAAGAACTGACCTCACAGTAAGCAGCGGGTAG	AGAGTATCTATATATAAGTAGTCACACATTCTTTATTCATAAAGTCATGTGTATATAGATATATATGCGATGTGTATGTATATCCACACATACACTATTGCATACAGACAGACATTCTCTTTTGAAGGTAAATAAAACAAAACGAAAACACAACGCAAAGAAAACAAAACAAAAACACAACAGAAAAGAAACAAAATACACAATGAATAAAGACGACCATGGCCCACAAACTTCCCTTTGTATATTTGGAAATGAAATTTAACTCAAAAGGTTTATGTAAGATTCTAGTAATAAAAATTTGAAGAACTGACCTCACAGTAAGCAGCGGGTAG	-			P-0007679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3	155	6	0	ENST00000378444.4:c.3031_3052-167del		p.X1011_splice	ENST00000378444	NM_001123385.1	1011						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	27	105	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0008445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	47	231	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89653860	89653860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	19	224	0	ENST00000371953.3:c.158T>C	p.Val53Ala	p.V53A	ENST00000371953	NM_000314.4	53	gTa/gCa					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118377213	118377213	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	34	318	0	ENST00000534358.1:c.10606C>A	p.Pro3536Thr	p.P3536T	ENST00000534358	NM_005933.3	3536	Ccc/Acc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3777900	3777900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	103	475	0	ENST00000262367.5:c.7148C>T	p.Pro2383Leu	p.P2383L	ENST00000262367	NM_004380.2	2383	cCc/cTc					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546922	9546922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	37	214	0	ENST00000353224.5:c.1100C>T	p.Ser367Phe	p.S367F	ENST00000353224	NM_177990.2	367	tCc/tTc					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46264865	46264865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	63	544	1	ENST00000371998.3:c.1735C>T	p.Pro579Ser	p.P579S	ENST00000371998		579	Cca/Tca					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	129	382	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	573	624	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220439743	220439743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1418	282	922	0	ENST00000243786.2:c.596G>A	p.Arg199His	p.R199H	ENST00000243786	NM_002191.3	199	cGc/cAc					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225422552	225422552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	60	188	0	ENST00000264414.4:c.88G>T	p.Val30Leu	p.V30L	ENST00000264414	NM_003590.4	30	Gta/Tta					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553680	106553680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	60	367	0	ENST00000369096.4:c.1645C>T	p.Leu549Phe	p.L549F	ENST00000369096	NM_001198.3	549	Ctc/Ttc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041596	42041596	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1399	253	912	1	ENST00000219905.7:c.5791G>T	p.Val1931Phe	p.V1931F	ENST00000219905	NM_001164273.1	1931	Gtt/Ttt					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81957192	81957192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	216	607	1	ENST00000359376.3:c.2410G>T	p.Gly804Trp	p.G804W	ENST00000359376	NM_002661.3	804	Ggg/Tgg					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59876618	59876618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	54	237	0	ENST00000259008.2:c.1183G>A	p.Ala395Thr	p.A395T	ENST00000259008	NM_032043.2	395	Gct/Act					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24167550	24167550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	146	363	0	ENST00000263121.7:c.934G>T	p.Ala312Ser	p.A312S	ENST00000263121	NM_003073.3	312	Gca/Tca					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411395	63411395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	197	285	0	ENST00000330258.3:c.1772G>T	p.Arg591Met	p.R591M	ENST00000330258	NM_152424.3	591	aGg/aTg					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56174807	56174807	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0002131-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			84	101	330	0	ENST00000399503.3:c.1969del	p.Thr657HisfsTer2	p.T657Hfs*2	ENST00000399503	NM_005921.1	656	Aaa/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	24	454	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	77	423	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	142	589	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0007279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	107	394	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138665048	138665048	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	16	18	0	ENST00000330315.3:c.517G>T	p.Ala173Ser	p.A173S	ENST00000330315	NM_023067.3	173	Gca/Tca					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76764082	76764082	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	35	289	0	ENST00000373344.5:c.7226T>G	p.Leu2409Arg	p.L2409R	ENST00000373344	NM_000489.3	2409	cTt/cGt					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65305384	65305384	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	48	282	0	ENST00000342505.4:c.2744G>A	p.Gly915Glu	p.G915E	ENST00000342505	NM_002227.2	915	gGa/gAa					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65305391	65305391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	46	277	0	ENST00000342505.4:c.2737G>A	p.Glu913Lys	p.E913K	ENST00000342505	NM_002227.2	913	Gag/Aag					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140476761	140476761	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	24	198	0	ENST00000288602.6:c.1645G>C	p.Glu549Gln	p.E549Q	ENST00000288602	NM_004333.4	549	Gag/Cag					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47430284	47430284	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	44	249	0	ENST00000377045.4:c.1559T>C	p.Phe520Ser	p.F520S	ENST00000377045	NM_001654.4	520	tTt/tCt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005629-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			372	105	356	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287478	33287478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005629-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			414	22	323	0	ENST00000374542.5:c.1619C>T	p.Pro540Leu	p.P540L	ENST00000374542	NM_001141970.1	540	cCc/cTc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044971	47044971	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005629-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			416	63	506	0	ENST00000329236.7:c.2063G>C	p.Arg688Pro	p.R688P	ENST00000329236	NM_001204466.1	688	cGc/cCc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11136172	11136172	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005629-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			390	40	437	1	ENST00000344626.4:c.3157del	p.Gln1053SerfsTer53	p.Q1053Sfs*53	ENST00000344626	NM_003072.3	1052	ttC/tt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207037	1207037	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005629-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			424	123	400	0	ENST00000326873.7:c.127del	p.Ala43ProfsTer8	p.A43Pfs*8	ENST00000326873	NM_000455.4	42	cGg/cg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108188188	108188194	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAACT	AAGAACT	TC			P-0005629-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			313	62	440	0	ENST00000278616.4:c.6287_6293delinsTC	p.Glu2096ValfsTer29	p.E2096Vfs*29	ENST00000278616	NM_000051.3	2096	gAAGAACTt/gTCt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	56	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	22	237	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007695	45007705	+	frameshift_variant	Frame_Shift_Del	DEL	TCTGGGTTTCA	TCTGGGTTTCA	-			P-0007521-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	55	278	0	ENST00000558401.1:c.144_154del	p.Gly49IlefsTer4	p.G49Ifs*4	ENST00000558401	NM_004048.2	48	TCTGGGTTTCAt/t					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	11	136	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65309857	65309857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	44	474	0	ENST00000342505.4:c.2293G>C	p.Glu765Gln	p.E765Q	ENST00000342505	NM_002227.2	765	Gag/Cag					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183763	10183763	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	77	339	0	ENST00000256474.2:c.232A>T	p.Asn78Tyr	p.N78Y	ENST00000256474	NM_000551.3	78	Aat/Tat					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781440	135781440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	93	746	2	ENST00000298552.3:c.1525C>T	p.Arg509Ter	p.R509*	ENST00000298552	NM_001162426.1	509	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	174	580	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	158	442	0	ENST00000304494.5:c.95T>C	p.Leu32Pro	p.L32P	ENST00000304494	NM_000077.4	32	cTg/cCg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	158	442	0	ENST00000304494.5:c.95T>C	p.Leu32Pro	p.L32P	ENST00000304494	NM_000077.4	32	cTg/cCg					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30715660	30715660	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	162	507	0	ENST00000359013.4:c.1393G>T	p.Glu465Ter	p.E465*	ENST00000359013	NM_001024847.2	465	Gag/Tag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117622211	117622211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	231	734	0	ENST00000368508.3:c.6659A>T	p.Asn2220Ile	p.N2220I	ENST00000368508	NM_002944.2	2220	aAt/aTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579700	7579703	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0008790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	168	623	0	ENST00000269305.4:c.93_96del	p.Leu32ProfsTer11	p.L32Pfs*11	ENST00000269305	NM_001126112.2	31	gtTCTG/gt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	284	415	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	289	499	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49929229	49929229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	249	854	1	ENST00000296474.3:c.3314C>T	p.Ala1105Val	p.A1105V	ENST00000296474	NM_002447.2	1105	gCc/gTc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242471	55242471	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	285	484	0	ENST00000275493.2:c.2241A>C	p.Leu747Phe	p.L747F	ENST00000275493	NM_005228.3	747	ttA/ttC					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11313987	11313987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	183	724	0	ENST00000361445.4:c.749C>G	p.Ala250Gly	p.A250G	ENST00000361445	NM_004958.3	250	gCc/gGc					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131895027	131895027	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	83	389	0	ENST00000265335.6:c.181A>C	p.Thr61Pro	p.T61P	ENST00000265335		61	Acc/Ccc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115796	8115796	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	245	833	3	ENST00000346208.3:c.1142C>A	p.Ser381Ter	p.S381*	ENST00000346208		381	tCa/tAa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88483910	88483910	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	144	669	4	ENST00000360948.2:c.1660C>A	p.Leu554Met	p.L554M	ENST00000360948	NM_001012338.2	554	Ctg/Atg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88576106	88576106	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	170	703	1	ENST00000360948.2:c.1567T>A	p.Cys523Ser	p.C523S	ENST00000360948	NM_001012338.2	523	Tgc/Agc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29553474	29553474	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	245	608	3	ENST00000358273.4:c.2023G>T	p.Gly675Ter	p.G675*	ENST00000358273	NM_001042492.2	675	Gga/Tga					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556193	29556193	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	72	265	2	ENST00000358273.4:c.2560C>T	p.Gln854Ter	p.Q854*	ENST00000358273	NM_001042492.2	854	Cag/Tag					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	8	622	0	ENST00000326873.7:c.580G>A	p.Asp194Asn	p.D194N	ENST00000326873	NM_000455.4	194	Gac/Aac					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227660894	227660894	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs13306470		P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	86	413	0	ENST00000305123.5:c.2561G>T	p.Arg854Leu	p.R854L	ENST00000305123	NM_005544.2	854	cGc/cTc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11291387	11291387	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	148	432	0	ENST00000361445.4:c.2619G>T	p.Lys873Asn	p.K873N	ENST00000361445	NM_004958.3	873	aaG/aaT					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085854	16085854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	97	294	0	ENST00000281043.3:c.1030G>T	p.Ala344Ser	p.A344S	ENST00000281043	NM_005378.4	344	Gca/Tca					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118376544	118376544	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	80	340	1	ENST00000534358.1:c.9937G>C	p.Ala3313Pro	p.A3313P	ENST00000534358	NM_005933.3	3313	Gct/Cct					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18544079	18544079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	52	357	2	ENST00000266497.5:c.1896G>T	p.Trp632Cys	p.W632C	ENST00000266497		632	tgG/tgT					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67644821	67644821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	84	333	0	ENST00000264010.4:c.86G>A	p.Arg29Gln	p.R29Q	ENST00000264010	NM_006565.3	29	cGg/cAg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141487	11141487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	175	473	0	ENST00000344626.4:c.3464G>T	p.Ser1155Ile	p.S1155I	ENST00000344626	NM_003072.3	1155	aGc/aTc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66189862	66189862	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	55	459	0	ENST00000273854.3:c.3084del	p.Gln1029SerfsTer3	p.Q1029Sfs*3	ENST00000273854	NM_004439.5	1028	gtG/gt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52685779	52685779	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	150	554	0	ENST00000394830.3:c.693del	p.Thr232ProfsTer21	p.T232Pfs*21	ENST00000394830	NM_018313.4	231	aaG/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578540	7578542	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0008863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	158	338	1	ENST00000269305.4:c.388_390del	p.Leu130del	p.L130del	ENST00000269305	NM_001126112.2	130	CTC/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	12	527	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	334	392	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	677	347	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40743865	40743865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	272	471	0	ENST00000373198.4:c.3130G>A	p.Val1044Ile	p.V1044I	ENST00000373198	NM_133170.3	1044	Gtc/Atc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420289	49420289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	266	497	2	ENST00000301067.7:c.15460C>T	p.Arg5154Trp	p.R5154W	ENST00000301067	NM_003482.3	5154	Cgg/Tgg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154963	112154963	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	204	473	0	ENST00000257430.4:c.1234C>T	p.Gln412Ter	p.Q412*	ENST00000257430	NM_000038.5	412	Cag/Tag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117709139	117709139	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	217	419	0	ENST00000368508.3:c.1818G>T	p.Gln606His	p.Q606H	ENST00000368508	NM_002944.2	606	caG/caT					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114920438	114920438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	556	635	2	ENST00000543371.1:c.1379G>A	p.Cys460Tyr	p.C460Y	ENST00000543371	NM_001198531.1	460	tGc/tAc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591807	48591807	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	214	423	0	ENST00000342988.3:c.970T>C	p.Cys324Arg	p.C324R	ENST00000342988	NM_005359.5	324	Tgt/Cgt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	197	390	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11123722	11123722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	229	485	1	ENST00000344626.4:c.2372C>T	p.Ala791Val	p.A791V	ENST00000344626	NM_003072.3	791	gCg/gTg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	176	376	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56875696	56875696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	186	776	0	ENST00000308159.5:c.2300G>A	p.Ser767Asn	p.S767N	ENST00000308159	NM_014669.4	767	aGt/aAt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602583	10602583	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	168	480	0	ENST00000171111.5:c.995del	p.Gly332AlafsTer68	p.G332Afs*68	ENST00000171111	NM_203500.1	332	gGc/gc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	213	262	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	109	402	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56161281	56161281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	67	208	0	ENST00000399503.3:c.1150G>A	p.Glu384Lys	p.E384K	ENST00000399503	NM_005921.1	384	Gag/Aag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174412	112174412	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	67	280	0	ENST00000257430.4:c.3121C>T	p.Gln1041Ter	p.Q1041*	ENST00000257430	NM_000038.5	1041	Caa/Taa					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20480083	20480083	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	100	340	1	ENST00000346618.3:c.400C>T	p.Arg134Ter	p.R134*	ENST00000346618	NM_001949.4	134	Cga/Tga					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243362	46243362	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	94	341	0	ENST00000334344.6:c.1716-1G>C		p.X572_splice	ENST00000334344	NM_152641.2	572						NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2110684	2110684	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140910086		P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	183	420	0	ENST00000219476.3:c.989C>T	p.Pro330Leu	p.P330L	ENST00000219476	NM_000548.3	330	cCg/cTg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916944	178916949	+	inframe_deletion	In_Frame_Del	DEL	AAGATC	AAGATC	-			P-0007287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	156	595	0	ENST00000263967.3:c.331_336delAAGATC	p.Lys111_Ile112del	p.K111_I112del	ENST00000263967	NM_006218.2	111	AAGATC/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	298	342	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
HIST3H3	0	MSKCC	GRCh37	1	228612761	228612761	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1461	415	850	1	ENST00000366696.1:c.266C>A	p.Ala89Asp	p.A89D	ENST00000366696	NM_003493.2	89	gCc/gAc					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227661764	227661764	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	160	207	0	ENST00000305123.5:c.1691G>T	p.Ser564Ile	p.S564I	ENST00000305123	NM_005544.2	564	aGt/aTt					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176636977	176636977	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	238	340	0	ENST00000439151.2:c.1577G>T	p.Arg526Met	p.R526M	ENST00000439151	NM_022455.4	526	aGg/aTg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108214050	108214050	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	186	364	0	ENST00000278616.4:c.8370A>T	p.Arg2790Ser	p.R2790S	ENST00000278616	NM_000051.3	2790	agA/agT					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108216560	108216560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	406	431	1	ENST00000278616.4:c.8509G>A	p.Glu2837Lys	p.E2837K	ENST00000278616	NM_000051.3	2837	Gaa/Aaa					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57861127	57861127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1283	201	619	0	ENST00000228682.2:c.924C>A	p.Cys308Ter	p.C308*	ENST00000228682	NM_005269.2	308	tgC/tgA					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1219321	1219321	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	237	379	0	ENST00000326873.7:c.375-2A>T		p.X125_splice	ENST00000326873	NM_000455.4	125						NEWRECORD																																																																									
BCL2L1	0	MSKCC	GRCh37	20	30309774	30309774	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	95	273	0	ENST00000307677.4:c.248T>C	p.Met83Thr	p.M83T	ENST00000307677	NM_138578.1	83	aTg/aCg					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31368176	31368176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	165	506	0	ENST00000328111.2:c.47G>T	p.Gly16Val	p.G16V	ENST00000328111	NM_006892.3	16	gGg/gTg					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164462	36164463	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0009289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	44	137	0	ENST00000300305.3:c.1412_1413del	p.Arg471ProfsTer128	p.R471Pfs*128	ENST00000300305		471	cGC/c					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0008292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	113	327	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70338621	70338628	+	frameshift_variant	Frame_Shift_Del	DEL	TCTTGAGC	TCTTGAGC	G			P-0008292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	120	474	0	ENST00000374080.3:c.17_24delinsG	p.Ile6SerfsTer7	p.I6Sfs*7	ENST00000374080		6	aTCTTGAGC/aG					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0009182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	125	376	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16258511	16258511	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	118	282	0	ENST00000375759.3:c.5776C>T	p.Gln1926Ter	p.Q1926*	ENST00000375759	NM_015001.2	1926	Caa/Taa					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241667432	241667432	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1473	228	576	0	ENST00000366560.3:c.1018A>G	p.Asn340Asp	p.N340D	ENST00000366560	NM_000143.3	340	Aat/Gat					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243895	46243908	+	frameshift_variant	Frame_Shift_Del	DEL	TGCAACACAAATGT	TGCAACACAAATGT	-			P-0009182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	149	396	0	ENST00000334344.6:c.1989_2002del	p.Ala664PhefsTer38	p.A664Ffs*38	ENST00000334344	NM_152641.2	663	acTGCAACACAAATGTct/acct					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162864359	162864361	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0009182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	131	325	0	ENST00000366898.1:c.152_154del	p.Arg51del	p.R51del	ENST00000366898	NM_004562.2	51	aGGAat/aat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006478-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	16	543	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45374932	45374932	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006478-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	32	544	0	ENST00000262160.6:c.911A>T	p.Asp304Val	p.D304V	ENST00000262160	NM_005901.5	304	gAc/gTc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0001357-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			618	2372	362	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577098	7577098	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001357-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			839	115	448	0	ENST00000269305.4:c.840A>T	p.Arg280Ser	p.R280S	ENST00000269305	NM_001126112.2	280	agA/agT					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2946306	2946306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001357-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			625	196	372	0	ENST00000396946.4:c.3431G>T	p.Arg1144Leu	p.R1144L	ENST00000396946	NM_032415.4	1144	cGc/cTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0001357-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			628	229	362	0	ENST00000269305.4:c.783-1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261						NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117570	70117570	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001357-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			683	45	352	0	ENST00000245479.2:c.38A>C	p.Glu13Ala	p.E13A	ENST00000245479	NM_000346.3	13	gAg/gCg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11152044	11152044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001357-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			361	164	264	0	ENST00000344626.4:c.4232G>T	p.Arg1411Leu	p.R1411L	ENST00000344626	NM_003072.3	1411	cGg/cTg					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	249	196	0	ENST00000397062.3:c.92G>A	p.Gly31Glu	p.G31E	ENST00000397062	NM_006164.4	31	gGa/gAa					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	288	212	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	545	293	0	ENST00000311189.7:c.38G>T	p.Gly13Val	p.G13V	ENST00000311189		13	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	493	419	0	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17350566	17350566	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201928318		P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	194	284	1	ENST00000375499.3:c.544G>A	p.Gly182Arg	p.G182R	ENST00000375499	NM_003000.2	182	Ggg/Agg					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46543223	46543223	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	230	416	0	ENST00000262741.5:c.278C>G	p.Ser93Ter	p.S93*	ENST00000262741	NM_003629.3	93	tCa/tGa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437669	52437669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	590	595	0	ENST00000460680.1:c.1492G>C	p.Glu498Gln	p.E498Q	ENST00000460680	NM_004656.3	498	Gag/Cag					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186503816	186503816	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	144	563	0	ENST00000323963.5:c.493G>C	p.Asp165His	p.D165H	ENST00000323963		165	Gat/Cat					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153332882	153332882	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	132	231	0	ENST00000281708.4:c.74C>G	p.Ser25Ter	p.S25*	ENST00000281708	NM_033632.3	25	tCa/tGa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151879199	151879199	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	496	469	1	ENST00000262189.6:c.5746A>T	p.Arg1916Ter	p.R1916*	ENST00000262189	NM_170606.2	1916	Aga/Tga					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118343567	118343567	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	210	252	0	ENST00000534358.1:c.1693C>G	p.Leu565Val	p.L565V	ENST00000534358	NM_005933.3	565	Ctg/Gtg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89349176	89349176	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	760	772	0	ENST00000301030.4:c.3774G>C	p.Glu1258Asp	p.E1258D	ENST00000301030	NM_001256183.1	1258	gaG/gaC					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16004865	16004865	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	288	294	0	ENST00000268712.3:c.2389G>C	p.Asp797His	p.D797H	ENST00000268712	NM_006311.3	797	Gat/Cat					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37687486	37687486	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	207	226	0	ENST00000447079.4:c.4390C>G	p.Gln1464Glu	p.Q1464E	ENST00000447079	NM_015083.1	1464	Cag/Gag					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11114071	11114071	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	555	425	0	ENST00000344626.4:c.1999G>A	p.Glu667Lys	p.E667K	ENST00000344626	NM_003072.3	667	Gag/Aag					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48916833	48916833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	188	200	0	ENST00000267163.4:c.363del	p.Asn123ThrfsTer2	p.N123Tfs*2	ENST00000267163	NM_000321.2	121	caG/ca					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143081624	143081625	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AG			P-0006674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	157	399	0	ENST00000262992.4:c.1449_1450delinsCT	p.Lys483_Lys484delinsAsnTer	p.K483_K484delinsN*	ENST00000262992	NM_001101669.1	483	aaGAag/aaCTag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	118	365	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21994278	21994278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	87	337	0	ENST00000361570.3:c.176C>T	p.Pro59Leu	p.P59L	ENST00000361570	NM_058195.3	59	cCg/cTg					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21994278	21994278	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	87	337	0	ENST00000361570.3:c.176C>T	p.Pro59Leu	p.P59L	ENST00000361570	NM_058195.3	59	cCg/cTg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696467	47696467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	110	301	0	ENST00000347630.2:c.356G>A	p.Ser119Asn	p.S119N	ENST00000347630	NM_001007230.1	119	aGt/aAt					NEWRECORD																																																																									
CCND3	0	MSKCC	GRCh37	6	41903731	41903731	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	256	311	0	ENST00000372991.4:c.826C>T	p.Gln276Ter	p.Q276*	ENST00000372991	NM_001760.3	276	Caa/Taa					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575035	64575035	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	182	234	0	ENST00000337652.1:c.787C>T	p.Gln263Ter	p.Q263*	ENST00000337652	NM_130803.2	263	Cag/Tag					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2120523	2120523	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	478	370	0	ENST00000219476.3:c.1783C>T	p.Gln595Ter	p.Q595*	ENST00000219476	NM_000548.3	595	Cag/Tag					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3786748	3786748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	504	327	0	ENST00000262367.5:c.4463C>T	p.Pro1488Leu	p.P1488L	ENST00000262367	NM_004380.2	1488	cCa/cTa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76944333	76944336	+	frameshift_variant	Frame_Shift_Del	DEL	GAAG	GAAG	-			P-0004885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	222	150	0	ENST00000373344.5:c.569_572del	p.Pro190HisfsTer15	p.P190Hfs*15	ENST00000373344	NM_000489.3	190	cCTTCa/ca					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	43	363	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	199	428	0	ENST00000269305.4:c.770T>C	p.Leu257Pro	p.L257P	ENST00000269305	NM_001126112.2	257	cTg/cCg					NEWRECORD																																																																									
CXCR4	0	MSKCC	GRCh37	2	136872498	136872498	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1223	227	706	1	ENST00000241393.3:c.1000C>T	p.Arg334Ter	p.R334*	ENST00000241393	NM_003467.2	334	Cga/Tga					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68862107	68862107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	80	435	0	ENST00000261769.5:c.2195G>A	p.Arg732Gln	p.R732Q	ENST00000261769	NM_004360.3	732	cGg/cAg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039629	47039629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	374	192	0	ENST00000329236.7:c.847C>T	p.Gln283Ter	p.Q283*	ENST00000329236	NM_001204466.1	283	Cag/Tag					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36932119	36932119	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	173	592	0	ENST00000361632.4:c.2350C>T	p.Pro784Ser	p.P784S	ENST00000361632		784	Ccc/Tcc					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245391	153245391	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	111	320	0	ENST00000281708.4:c.1800T>G	p.Asp600Glu	p.D600E	ENST00000281708	NM_033632.3	600	gaT/gaG					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153258954	153258954	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	100	329	0	ENST00000281708.4:c.861G>T	p.Glu287Asp	p.E287D	ENST00000281708	NM_033632.3	287	gaG/gaT					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112137007	112137007	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	47	349	1	ENST00000257430.4:c.761C>G	p.Ser254Ter	p.S254*	ENST00000257430	NM_000038.5	254	tCa/tGa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174394	112174394	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	83	307	0	ENST00000257430.4:c.3103C>T	p.Gln1035Ter	p.Q1035*	ENST00000257430	NM_000038.5	1035	Cag/Tag					NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139820303	139820303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1294	291	610	1	ENST00000247668.2:c.1456C>T	p.Arg486Trp	p.R486W	ENST00000247668	NM_021138.3	486	Cgg/Tgg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5222760	5222760	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199829286		P-0006329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	35	205	0	ENST00000357368.4:c.3043C>T	p.Arg1015Cys	p.R1015C	ENST00000357368	NM_002850.3	1015	Cgc/Tgc					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0008267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	386	527	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	268	397	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0008267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	152	403	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	144	306	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81609934	81609934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	190	362	0	ENST00000298171.2:c.1532C>T	p.Thr511Met	p.T511M	ENST00000298171	NM_000369.2	511	aCg/aTg					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9775765	9775765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	53	378	0	ENST00000377346.4:c.308C>T	p.Ala103Val	p.A103V	ENST00000377346	NM_005026.3	103	gCc/gTc					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	112024187	112024187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	59	566	0	ENST00000368678.4:c.598G>A	p.Val200Ile	p.V200I	ENST00000368678		200	Gtc/Atc					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870787	12870787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	35	153	0	ENST00000228872.4:c.14G>T	p.Arg5Leu	p.R5L	ENST00000228872	NM_004064.3	5	cGa/cTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578460	7578460	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	116	447	2	ENST00000269305.4:c.470T>C	p.Val157Ala	p.V157A	ENST00000269305	NM_001126112.2	157	gTc/gCc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	305	241	1	ENST00000397752.3:c.3028G>A	p.Asp1010Asn	p.D1010N	ENST00000397752	NM_000245.2	1010	Gat/Aat					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42797786	42797786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	59	402	0	ENST00000575354.2:c.3838G>A	p.Gly1280Arg	p.G1280R	ENST00000575354	NM_015125.3	1280	Ggg/Agg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604754	48604754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	85	450	0	ENST00000342988.3:c.1576G>A	p.Glu526Lys	p.E526K	ENST00000342988	NM_005359.5	526	Gaa/Aaa					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49924966	49924966	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	99	464	1	ENST00000296474.3:c.3977C>A	p.Ala1326Glu	p.A1326E	ENST00000296474	NM_002447.2	1326	gCa/gAa					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176522348	176522348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	85	387	1	ENST00000292408.4:c.1537G>T	p.Asp513Tyr	p.D513Y	ENST00000292408	NM_213647.1	513	Gac/Tac					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135772068	135772068	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	22	157	0	ENST00000298552.3:c.3049G>C	p.Glu1017Gln	p.E1017Q	ENST00000298552	NM_001162426.1	1017	Gag/Cag					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88649842	88649842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	46	258	0	ENST00000372037.3:c.91C>T	p.His31Tyr	p.H31Y	ENST00000372037	NM_004329.2	31	Cat/Tat					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18699288	18699288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	97	432	0	ENST00000266497.5:c.3389G>A	p.Gly1130Glu	p.G1130E	ENST00000266497		1130	gGa/gAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	164	689	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc					NEWRECORD																																																																									
MST1	0	MSKCC	GRCh37	3	49725183	49725183	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	46	313	0	ENST00000449682.2:c.242G>T	p.Arg81Leu	p.R81L	ENST00000449682	NM_020998.3	81	cGg/cTg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106512981	106512981	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	22	482	1	ENST00000359195.3:c.1996-1G>T		p.X666_splice	ENST00000359195	NM_002649.2	666						NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38272389	38272389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	167	678	1	ENST00000425967.3:c.1978G>A	p.Val660Ile	p.V660I	ENST00000425967	NM_001174067.1	660	Gtc/Atc					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100933286	100933286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	285	973	0	ENST00000325455.5:c.2104G>A	p.Gly702Arg	p.G702R	ENST00000325455	NM_001202474.3	702	Gga/Aga					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112926888	112926888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	14	648	1	ENST00000351677.2:c.1508G>T	p.Gly503Val	p.G503V	ENST00000351677	NM_002834.3	503	gGg/gTg					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562301	21562301	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	70	406	0	ENST00000382592.4:c.1618A>G	p.Met540Val	p.M540V	ENST00000382592	NM_014572.2	540	Atg/Gtg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48951169	48951169	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0006257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	55	546	0	ENST00000267163.4:c.1331A>T	p.Gln444Leu	p.Q444L	ENST00000267163	NM_000321.2	444	cAg/cTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	34	453	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	82	575	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	87	245	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11175499	11175499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	151	551	0	ENST00000361445.4:c.7043G>T	p.Arg2348Leu	p.R2348L	ENST00000361445	NM_004958.3	2348	cGt/cTt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101342	27101342	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	351	539	0	ENST00000324856.7:c.4624G>T	p.Glu1542Ter	p.E1542*	ENST00000324856	NM_006015.4	1542	Gaa/Taa					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212543781	212543781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	113	309	0	ENST00000342788.4:c.1618G>A	p.Asp540Asn	p.D540N	ENST00000342788	NM_005235.2	540	Gat/Aat					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67479829	67479829	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	113	488	0	ENST00000327367.4:c.1136G>T	p.Gly379Val	p.G379V	ENST00000327367	NM_005902.3	379	gGc/gTc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72863735	72863735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	293	574	0	ENST00000268489.5:c.3472G>A	p.Gly1158Arg	p.G1158R	ENST00000268489	NM_006885.3	1158	Gga/Aga					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15349940	15349940	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	95	405	0	ENST00000263377.2:c.3712G>C	p.Glu1238Gln	p.E1238Q	ENST00000263377	NM_058243.2	1238	Gag/Cag					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937990	76937990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	120	551	0	ENST00000373344.5:c.2758G>T	p.Gly920Cys	p.G920C	ENST00000373344	NM_000489.3	920	Ggt/Tgt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	14	236	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0002916-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			252	48	320	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678409	88678409	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002916-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			575	51	850	0	ENST00000360948.2:c.1127A>G	p.Tyr376Cys	p.Y376C	ENST00000360948	NM_001012338.2	376	tAt/tGt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0002916-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	264	656	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151855982	151855982	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002916-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			761	43	641	0	ENST00000262189.6:c.11636A>G	p.Tyr3879Cys	p.Y3879C	ENST00000262189	NM_170606.2	3879	tAc/tGc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938859	76938859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002916-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			613	45	796	0	ENST00000373344.5:c.1889G>T	p.Gly630Val	p.G630V	ENST00000373344	NM_000489.3	630	gGa/gTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	93	291	0	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061222	38061246	+	protein_altering_variant	In_Frame_Del	DEL	TTCTCGAACATGTTGCCGGAGTCCG	TTCTCGAACATGTTGCCGGAGTCCG	C			P-0009603-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	72	279	0	ENST00000250448.2:c.743_767delinsG	p.Pro248_Asn256delinsArg	p.P248_N256delinsR	ENST00000250448	NM_004496.3	248	cCGGACTCCGGCAACATGTTCGAGAAc/cGc					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81350115	81350115	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	27	901	0	ENST00000222390.5:c.1217C>G	p.Thr406Arg	p.T406R	ENST00000222390	NM_000601.4	406	aCa/aGa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116436080	116436080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	24	911	1	ENST00000397752.3:c.4075G>A	p.Val1359Ile	p.V1359I	ENST00000397752	NM_000245.2	1359	Gta/Ata					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151874196	151874196	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	131	724	0	ENST00000262189.6:c.8342T>C	p.Ile2781Thr	p.I2781T	ENST00000262189	NM_170606.2	2781	aTt/aCt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108200951	108200951	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			16	102	645	0	ENST00000278616.4:c.7318A>G	p.Lys2440Glu	p.K2440E	ENST00000278616	NM_000051.3	2440	Aag/Gag					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118347665	118347665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	166	917	0	ENST00000534358.1:c.3302G>A	p.Arg1101Gln	p.R1101Q	ENST00000534358	NM_005933.3	1101	cGa/cAa					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56478860	56478860	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	56	1196	1	ENST00000267101.3:c.316C>T	p.Arg106Ter	p.R106*	ENST00000267101	NM_001982.3	106	Cga/Tga					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	10	289	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
BAP1	8314	MSKCC	GRCh37	3	52437795	52437795	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	10	671	0	ENST00000460680.1:c.1366C>T	p.Gln456Ter	p.Q456*	ENST00000460680	NM_004656.3	456	Cag/Tag					NEWRECORD																																																																									
NFKBIA	0	MSKCC	GRCh37	14	35873745	35873745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	19	449	0	ENST00000216797.5:c.106T>C	p.Ser36Pro	p.S36P	ENST00000216797	NM_020529.2	36	Tcc/Ccc					NEWRECORD																																																																									
CD79A	0	MSKCC	GRCh37	19	42383633	42383633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	16	513	0	ENST00000221972.3:c.408G>A	p.Met136Ile	p.M136I	ENST00000221972	NM_021601.3	136	atG/atA					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	211	527	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	43	255	1	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0006460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	166	696	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	181	543	0	ENST00000256078.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	61	Caa/Aaa					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176678824	176678824	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	195	712	0	ENST00000439151.2:c.4735G>A	p.Gly1579Arg	p.G1579R	ENST00000439151	NM_022455.4	1579	Gga/Aga					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31388640	31388640	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	204	607	2	ENST00000328111.2:c.1906-1G>T		p.X636_splice	ENST00000328111	NM_006892.3	636						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	623	415	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39923059	39923059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	873	307	0	ENST00000378444.4:c.3649C>T	p.Arg1217Ter	p.R1217*	ENST00000378444	NM_001123385.1	1217	Cga/Tga					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55981456	55981456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	567	437	0	ENST00000263923.4:c.481C>A	p.Leu161Ile	p.L161I	ENST00000263923	NM_002253.2	161	Ctt/Att					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131939014	131939014	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	403	259	0	ENST00000265335.6:c.2230G>A	p.Glu744Lys	p.E744K	ENST00000265335		744	Gag/Aag					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139410108	139410108	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	549	346	0	ENST00000277541.6:c.1730A>G	p.Tyr577Cys	p.Y577C	ENST00000277541	NM_017617.3	577	tAc/tGc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48881542	48881542	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	424	262	0	ENST00000267163.4:c.264G>T	p.Leu88Phe	p.L88F	ENST00000267163	NM_000321.2	88	ttG/ttT					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41215920	41215920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	560	370	1	ENST00000357654.3:c.5123C>A	p.Ala1708Glu	p.A1708E	ENST00000357654	NM_007294.3	1708	gCg/gAg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	110	93	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	110	93	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	110	93	2	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7216125	7216125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	314	458	0	ENST00000380728.2:c.934C>T	p.Arg312Trp	p.R312W	ENST00000380728		312	Cgg/Tgg					NEWRECORD																																																																									
H3F3B	0	MSKCC	GRCh37	17	73775242	73775242	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1278	214	274	0	ENST00000254810.4:c.14A>T	p.Lys5Met	p.K5M	ENST00000254810	NM_005324.3	5	aAg/aTg					NEWRECORD																																																																									
DNAJB1	0	MSKCC	GRCh37	19	14627760	14627760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	257	380	1	ENST00000254322.2:c.310G>A	p.Glu104Lys	p.E104K	ENST00000254322	NM_006145.1	104	Gag/Aag					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339535	70339535	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0008134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1229	489	382	0	ENST00000374080.3:c.205-1G>C		p.X69_splice	ENST00000374080		69						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	172	227	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	302	416	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554327	63554327	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	325	389	0	ENST00000307078.5:c.412T>C	p.Tyr138His	p.Y138H	ENST00000307078	NM_004655.3	138	Tac/Cac					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175758	112175759	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0005865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	114	219	0	ENST00000257430.4:c.4468_4469del	p.His1490PhefsTer23	p.H1490Ffs*23	ENST00000257430	NM_000038.5	1489	ttACat/ttat					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173538	112173538	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	158	335	0	ENST00000257430.4:c.2247del	p.Leu749PhefsTer12	p.L749Ffs*12	ENST00000257430	NM_000038.5	749	ttG/tt					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591144	67591154	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ATACTTGATGT	ATACTTGATGT	C			P-0005865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	157	230	0	ENST00000274335.5:c.1737_1745+2delATACTTGATGTinsC		p.X579_splice	ENST00000274335		579						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29663434	29663440	+	frameshift_variant	Frame_Shift_Del	DEL	GATGGCA	GATGGCA	-			P-0006755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	263	418	0	ENST00000358273.4:c.6093_6099del	p.Met2031IlefsTer4	p.M2031Ifs*4	ENST00000358273	NM_001042492.2	2030	gtGATGGCA/gt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	25	514	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630590	187630590	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs3733415		P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	31	508	2	ENST00000441802.2:c.392C>T	p.Ala131Val	p.A131V	ENST00000441802	NM_005245.3	131	gCg/gTg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	22	363	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157511329	157511329	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	20	303	0	ENST00000346085.5:c.3851delG	p.Gly1284GlufsTer2	p.G1284Efs*2	ENST00000346085	NM_020732.3	1283	Ggg/gg					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67200476	67200476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	26	426	1	ENST00000312629.5:c.670G>A	p.Ala224Thr	p.A224T	ENST00000312629	NM_003952.2	224	Gcc/Acc					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16082592	16082592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	15	103	0	ENST00000281043.3:c.406C>T	p.His136Tyr	p.H136Y	ENST00000281043	NM_005378.4	136	Cac/Tac					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209104698	209104698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	24	450	0	ENST00000345146.2:c.880G>A	p.Val294Met	p.V294M	ENST00000345146	NM_005896.2	294	Gtg/Atg					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209108184	209108184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	29	479	0	ENST00000345146.2:c.665G>A	p.Arg222His	p.R222H	ENST00000345146	NM_005896.2	222	cGt/cAt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187629582	187629582	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	28	451	1	ENST00000441802.2:c.1400C>T	p.Ala467Val	p.A467V	ENST00000441802	NM_005245.3	467	gCg/gTg					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81927315	81927315	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	30	403	0	ENST00000359376.3:c.988T>C	p.Tyr330His	p.Y330H	ENST00000359376	NM_002661.3	330	Tac/Cac					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15967421	15967421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	29	434	0	ENST00000268712.3:c.5182C>T	p.Arg1728Trp	p.R1728W	ENST00000268712	NM_006311.3	1728	Cgg/Tgg					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435134	56435134	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184604359		P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	20	357	2	ENST00000407977.2:c.2003G>A	p.Arg668Gln	p.R668Q	ENST00000407977		668	cGg/cAg					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18278055	18278055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	22	462	0	ENST00000222254.8:c.1675C>T	p.Arg559Cys	p.R559C	ENST00000222254	NM_005027.3	559	Cgc/Tgc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15290231	15290231	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	33	554	0	ENST00000263388.2:c.3404del	p.Gly1135ValfsTer137	p.G1135Vfs*137	ENST00000263388	NM_000435.2	1135	gGt/gt					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	56	322	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18576974	18576974	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0007832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	29	248	0	ENST00000266497.5:c.2381+1G>A		p.X794_splice	ENST00000266497		794						NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	30	303	0	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098846	178098846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	77	584	0	ENST00000397062.3:c.199G>A	p.Glu67Lys	p.E67K	ENST00000397062	NM_006164.4	67	Gag/Aag					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88649856	88649856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	27	175	0	ENST00000372037.3:c.105G>A	p.Met35Ile	p.M35I	ENST00000372037	NM_004329.2	35	atG/atA					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88672116	88672116	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	41	259	0	ENST00000372037.3:c.650G>A	p.Gly217Asp	p.G217D	ENST00000372037	NM_004329.2	217	gGt/gAt					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15289925	15289925	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35031555		P-0007832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	34	308	0	ENST00000263388.2:c.3629G>A	p.Arg1210His	p.R1210H	ENST00000263388	NM_000435.2	1210	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578454	7578455	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0007832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	84	278	0	ENST00000269305.4:c.475_476del	p.Ala159HisfsTer21	p.A159Hfs*21	ENST00000269305	NM_001126112.2	159	GCc/c					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	525	387	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0008978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	905	504	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781440	135781440	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006498-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	64	650	1	ENST00000298552.3:c.1525C>T	p.Arg509Ter	p.R509*	ENST00000298552	NM_001162426.1	509	Cga/Tga					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215632379	215632379	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0006498-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			255	39	250	0	ENST00000260947.4:c.1396-1G>C		p.X466_splice	ENST00000260947	NM_000465.2	466						NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111856067	111856067	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006498-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			549	162	183	1	ENST00000341259.2:c.118G>A	p.Glu40Lys	p.E40K	ENST00000341259	NM_005475.2	40	Gag/Aag					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28971141	28971141	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006498-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			422	24	438	0	ENST00000282397.4:c.1616A>G	p.Asn539Ser	p.N539S	ENST00000282397	NM_002019.4	539	aAt/aGt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183814	10183821	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCAGCC	CCGCAGCC	-			P-0006498-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			304	91	177	0	ENST00000256474.2:c.284_291del	p.Pro95LeufsTer34	p.P95Lfs*34	ENST00000256474	NM_000551.3	95	CCGCAGCCc/c					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120459	94120459	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	364	447	2	ENST00000369303.4:c.592G>T	p.Val198Phe	p.V198F	ENST00000369303	NM_004440.3	198	Gtc/Ttc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151842344	151842344	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	226	277	0	ENST00000262189.6:c.14068C>T	p.Arg4690Ter	p.R4690*	ENST00000262189	NM_170606.2	4690	Cga/Tga					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	115	291	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	311	402	0	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa					NEWRECORD																																																																									
RAF1	5894	MSKCC	GRCh37	3	12645699	12645699	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs80338796		P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	116	419	0	ENST00000251849.4:c.770C>T	p.Ser257Leu	p.S257L	ENST00000251849	NM_002880.3	257	tCg/tTg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108218090	108218090	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	123	308	0	ENST00000278616.4:c.8669T>C	p.Leu2890Pro	p.L2890P	ENST00000278616	NM_000051.3	2890	cTa/cCa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11205084	11205084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	159	535	0	ENST00000361445.4:c.4705G>A	p.Asp1569Asn	p.D1569N	ENST00000361445	NM_004958.3	1569	Gac/Aac					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25467059	25467059	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	200	379	0	ENST00000264709.3:c.1816C>T	p.Gln606Ter	p.Q606*	ENST00000264709	NM_175629.2	606	Cag/Tag					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142272238	142272238	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	88	331	1	ENST00000350721.4:c.2636C>T	p.Ala879Val	p.A879V	ENST00000350721	NM_001184.3	879	gCc/gTc					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38949889	38949889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	337	394	0	ENST00000357387.3:c.4061C>T	p.Pro1354Leu	p.P1354L	ENST00000357387	NM_152756.3	1354	cCa/cTa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56177050	56177050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	131	282	0	ENST00000399503.3:c.2320C>T	p.Pro774Ser	p.P774S	ENST00000399503	NM_005921.1	774	Cct/Tct					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589165	67589165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	156	409	0	ENST00000274335.5:c.1153C>T	p.His385Tyr	p.H385Y	ENST00000274335		385	Cat/Tat					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175021	112175021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	148	276	0	ENST00000257430.4:c.3730C>T	p.Gln1244Ter	p.Q1244*	ENST00000257430	NM_000038.5	1244	Caa/Taa					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26032257	26032257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	248	273	0	ENST00000244661.2:c.32C>T	p.Ser11Phe	p.S11F	ENST00000244661	NM_003537.3	11	tCc/tTc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8507354	8507354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	231	488	1	ENST00000356435.5:c.1624G>A	p.Asp542Asn	p.D542N	ENST00000356435		542	Gat/Aat					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8526630	8526630	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	41	245	0	ENST00000356435.5:c.565A>T	p.Arg189Ter	p.R189*	ENST00000356435		189	Aga/Tga					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135787758	135787758	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	127	452	0	ENST00000298552.3:c.824A>T	p.Tyr275Phe	p.Y275F	ENST00000298552	NM_001162426.1	275	tAt/tTt					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123256237	123256237	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	149	333	0	ENST00000358487.5:c.1673-1G>A		p.X558_splice	ENST00000358487	NM_000141.4	558						NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	101981798	101981798	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	367	387	2	ENST00000282441.5:c.219G>A	p.Met73Ile	p.M73I	ENST00000282441	NM_001130145.2	73	atG/atA					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	461392	461392	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	85	486	0	ENST00000399788.2:c.1128T>A	p.Asp376Glu	p.D376E	ENST00000399788	NM_001042603.1	376	gaT/gaA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444788	49444788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	149	413	0	ENST00000301067.7:c.2678C>T	p.Pro893Leu	p.P893L	ENST00000301067	NM_003482.3	893	cCc/cTc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133237640	133237640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	258	483	0	ENST00000320574.5:c.2975C>T	p.Ala992Val	p.A992V	ENST00000320574	NM_006231.2	992	gCc/gTc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28608335	28608335	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	132	433	0	ENST00000241453.7:c.1721G>A	p.Ser574Asn	p.S574N	ENST00000241453	NM_004119.2	574	aGc/aAc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913149	32913149	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	283	823	1	ENST00000380152.3:c.4657A>T	p.Thr1553Ser	p.T1553S	ENST00000380152		1553	Act/Tct					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41744435	41744435	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	130	605	0	ENST00000301178.4:c.1055A>T	p.His352Leu	p.H352L	ENST00000301178	NM_021913.4	352	cAt/cTt					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561090	9561090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	128	320	0	ENST00000353224.5:c.692C>T	p.Ser231Leu	p.S231L	ENST00000353224	NM_177990.2	231	tCa/tTa					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30069315	30069315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	89	395	0	ENST00000338641.4:c.1180G>A	p.Glu394Lys	p.E394K	ENST00000338641	NM_000268.3	394	Gag/Aag					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100617551	100617551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	282	480	0	ENST00000308731.7:c.518G>A	p.Gly173Glu	p.G173E	ENST00000308731	NM_000061.2	173	gGa/gAa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955541	48955541	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	142	371	0	ENST00000267163.4:c.1657del	p.Cys553ValfsTer58	p.C553Vfs*58	ENST00000267163	NM_000321.2	553	Tgt/gt					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134905	41134905	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1268	208	811	0	ENST00000379561.5:c.723del	p.Glu242ArgfsTer91	p.E242Rfs*91	ENST00000379561	NM_002015.3	241	ccA/cc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29665159	29665207	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TACCTGTTCCGCCCTCACTTCTCCCAAATATTTATGGTTCTCAAGTTGT	TACCTGTTCCGCCCTCACTTCTCCCAAATATTTATGGTTCTCAAGTTGT	-			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	58	219	1	ENST00000358273.4:c.6819+2_6819+50del		p.X2273_splice	ENST00000358273	NM_001042492.2	2273						NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139399226	139399227	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	120	311	0	ENST00000277541.6:c.4916_4917delinsTT	p.Ala1639Val	p.A1639V	ENST00000277541	NM_017617.3	1639	gCC/gTT					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15296144	15296145	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	181	434	0	ENST00000263388.2:c.2219_2220delinsTT	p.Ser740Phe	p.S740F	ENST00000263388	NM_000435.2	740	tCC/tTT					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66522053	66522054	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	186	135	0	ENST00000358598.2:c.708_708+1delinsAA		p.X236_splice	ENST00000358598	NM_212471.2	236						NEWRECORD																																																																									
RAD51B	0	MSKCC	GRCh37	14	68934945	68934946	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	81	443	0	ENST00000487270.1:c.1014_1015delinsAA	p.Glu339Lys	p.E339K	ENST00000487270	NM_133509.3	338	aaGGag/aaAAag					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36031177	36031178	+	missense_variant	Missense_Mutation	DNP	GG	GG	CA			P-0009105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	215	465	1	ENST00000358208.4:c.1296_1297delinsCA	p.Ala433Thr	p.A433T	ENST00000358208		432	acGGct/acCAct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	29	332	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	24	509	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003752-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			783	70	433	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0003752-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			503	366	394	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0003752-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			257	130	247	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48881462	48881462	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003752-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			334	115	416	1	ENST00000267163.4:c.184C>T	p.Gln62Ter	p.Q62*	ENST00000267163	NM_000321.2	62	Cag/Tag					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40475063	40475063	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003752-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			517	250	635	0	ENST00000264657.5:c.1847A>G	p.Glu616Gly	p.E616G	ENST00000264657	NM_139276.2	616	gAa/gGa					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42794603	42794603	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003752-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			386	236	390	0	ENST00000575354.2:c.1683G>C	p.Glu561Asp	p.E561D	ENST00000575354	NM_015125.3	561	gaG/gaC					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88799185	88799185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003752-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			429	59	521	0	ENST00000360948.2:c.200G>T	p.Gly67Val	p.G67V	ENST00000360948	NM_001012338.2	67	gGg/gTg					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007325-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	299	490	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440879	52440909	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGCCGGGCCTTGTCTGTCCACTCCTCGTC	CCCGCCGGGCCTTGTCTGTCCACTCCTCGTC	-			P-0007325-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	413	473	0	ENST00000460680.1:c.595_625del	p.Asp199SerfsTer22	p.D199Sfs*22	ENST00000460680	NM_004656.3	199	GACGAGGAGTGGACAGACAAGGCCCGGCGGGtc/tc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	152	572	1	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89445035	89445035	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	107	702	0	ENST00000336596.2:c.1355G>T	p.Ser452Ile	p.S452I	ENST00000336596	NM_005233.5	452	aGc/aTc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47038792	47038792	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	132	581	0	ENST00000329236.7:c.568C>T	p.Gln190Ter	p.Q190*	ENST00000329236	NM_001204466.1	190	Cag/Tag					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243727107	243727107	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	146	593	0	ENST00000263826.5:c.863C>G	p.Thr288Arg	p.T288R	ENST00000263826	NM_005465.4	288	aCa/aGa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47168137	47168137	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	80	632	1	ENST00000409792.3:c.87+1G>T		p.X29_splice	ENST00000409792	NM_014159.6	29						NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1801519	1801519	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	143	715	0	ENST00000260795.2:c.425A>T	p.Glu142Val	p.E142V	ENST00000260795		142	gAg/gTg					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131923688	131923688	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	247	671	0	ENST00000265335.6:c.958A>T	p.Arg320Trp	p.R320W	ENST00000265335		320	Agg/Tgg					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149514478	149514478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	86	722	0	ENST00000261799.4:c.466C>A	p.Leu156Met	p.L156M	ENST00000261799	NM_002609.3	156	Ctg/Atg					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	401528	401528	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	156	635	1	ENST00000380956.4:c.850G>T	p.Ala284Ser	p.A284S	ENST00000380956	NM_001195286.1	284	Gcc/Tcc					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729954	41729954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	201	1008	2	ENST00000242208.4:c.575C>A	p.Ala192Asp	p.A192D	ENST00000242208	NM_002192.2	192	gCc/gAc					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128751019	128751019	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1347	71	448	0	ENST00000377970.2:c.556T>A	p.Cys186Ser	p.C186S	ENST00000377970	NM_002467.4	186	Tgc/Agc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425124	49425124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	89	759	1	ENST00000301067.7:c.13364G>C	p.Arg4455Pro	p.R4455P	ENST00000301067	NM_003482.3	4455	cGc/cCc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49432038	49432038	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	209	821	0	ENST00000301067.7:c.9101A>T	p.Asn3034Ile	p.N3034I	ENST00000301067	NM_003482.3	3034	aAt/aTt					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922007	39922007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	83	777	0	ENST00000378444.4:c.4165G>T	p.Asp1389Tyr	p.D1389Y	ENST00000378444	NM_001123385.1	1389	Gat/Tat					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53247099	53247099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	124	987	0	ENST00000375401.3:c.401G>T	p.Trp134Leu	p.W134L	ENST00000375401	NM_004187.3	134	tGg/tTg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931523	66931523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	88	649	0	ENST00000374690.3:c.2165C>T	p.Ala722Val	p.A722V	ENST00000374690	NM_000044.3	722	gCc/gTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40877415	40877415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	164	611	2	ENST00000373198.4:c.2281del	p.Asp761ThrfsTer4	p.D761Tfs*4	ENST00000373198	NM_133170.3	761	Gac/ac					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1223099	1223109	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCGGACGA	GGCGCGGACGA	-			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	162	769	0	ENST00000326873.7:c.1038_1048del	p.Ala347ArgfsTer9	p.A347Rfs*9	ENST00000326873	NM_000455.4	346	GGCGCGGACGAg/g					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1223078	1223092	+	inframe_deletion	In_Frame_Del	DEL	CCGTACTTGGAGGAC	CCGTACTTGGAGGAC	-			P-0005707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	164	757	0	ENST00000326873.7:c.1016_1030del	p.Pro339_Asp343del	p.P339_D343del	ENST00000326873	NM_000455.4	339	CCGTACTTGGAGGAC/-					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	343	507	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	402	528	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0006657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	285	614	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66361214	66361214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	50	493	0	ENST00000273854.3:c.958G>A	p.Gly320Ser	p.G320S	ENST00000273854	NM_004439.5	320	Ggc/Agc					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135801101	135801101	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	192	472	0	ENST00000298552.3:c.236A>G	p.Tyr79Cys	p.Y79C	ENST00000298552	NM_001162426.1	79	tAt/tGt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858370	9858370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	68	453	0	ENST00000330684.3:c.3031C>T	p.Arg1011Trp	p.R1011W	ENST00000330684	NM_001134407.1	1011	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002123-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			571	247	453	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29041698	29041698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002123-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			689	188	538	0	ENST00000282397.4:c.121C>A	p.His41Asn	p.H41N	ENST00000282397	NM_002019.4	41	Cac/Aac					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89833611	89833611	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002123-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			901	119	624	0	ENST00000389301.3:c.2539A>C	p.Lys847Gln	p.K847Q	ENST00000389301	NM_000135.2	847	Aag/Cag					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003927-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			668	422	351	0	ENST00000288135.5:c.1676T>G	p.Val559Gly	p.V559G	ENST00000288135	NM_000222.2	559	gTt/gGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578250	7578250	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	971	556	0	ENST00000269305.4:c.599delA	p.Asn200IlefsTer47	p.N200Ifs*47	ENST00000269305	NM_001126112.2	200	aAt/at					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55972916	55972916	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	122	429	0	ENST00000263923.4:c.1474C>T	p.Gln492Ter	p.Q492*	ENST00000263923	NM_002253.2	492	Cag/Tag					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741345	17741345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	120	285	0	ENST00000250003.3:c.16C>G	p.Pro6Ala	p.P6A	ENST00000250003	NM_002478.4	6	Cca/Gca					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139410449	139410463	+	frameshift_variant	Frame_Shift_Del	DEL	GGTGTAAGTGTTGGG	GGTGTAAGTGTTGGG	C			P-0006495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	422	441	0	ENST00000277541.6:c.1639_1653delinsG	p.Pro547ValfsTer18	p.P547Vfs*18	ENST00000277541	NM_017617.3	547	CCCAACACTTACACC/G					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	269	170	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	269	170	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	269	170	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162724631	162724631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	666	354	0	ENST00000367921.3:c.403C>T	p.Arg135Cys	p.R135C	ENST00000367921	NM_006182.2	135	Cgt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	433	331	0	ENST00000269305.4:c.389T>C	p.Leu130Pro	p.L130P	ENST00000269305	NM_001126112.2	130	cTc/cCc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	164	471	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1218500	1218500	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	144	463	0	ENST00000326873.7:c.374+1A>G		p.X125_splice	ENST00000326873	NM_000455.4	125						NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128205032	128205032	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs113166293		P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	107	459	2	ENST00000341105.2:c.409C>T	p.Pro137Ser	p.P137S	ENST00000341105	NM_032638.4	137	Cca/Tca					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602563	10602563	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	26	448	0	ENST00000171111.5:c.1015C>T	p.Leu339Phe	p.L339F	ENST00000171111	NM_203500.1	339	Ctc/Ttc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610136	10610136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	57	605	0	ENST00000171111.5:c.574G>T	p.Glu192Ter	p.E192*	ENST00000171111	NM_203500.1	192	Gag/Tag					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20156715	20156715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	173	258	0	ENST00000379607.5:c.42G>T	p.Arg14Ser	p.R14S	ENST00000379607	NM_001412.3	14	agG/agT					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045497	47045497	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	151	318	0	ENST00000329236.7:c.2230A>T	p.Arg744Ter	p.R744*	ENST00000329236	NM_001204466.1	744	Aga/Tga					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72832404	72832404	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	195	715	1	ENST00000268489.5:c.4177del	p.Val1393CysfsTer32	p.V1393Cfs*32	ENST00000268489	NM_006885.3	1393	Gtg/tg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183750	10183750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	59	571	0	ENST00000256474.2:c.219G>C	p.Gln73His	p.Q73H	ENST00000256474	NM_000551.3	73	caG/caC					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2979533	2979533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	40	507	0	ENST00000396946.4:c.714G>C	p.Lys238Asn	p.K238N	ENST00000396946	NM_032415.4	238	aaG/aaC					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	116	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47032537	47032537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	106	455	2	ENST00000329236.7:c.212A>G	p.Gln71Arg	p.Q71R	ENST00000329236	NM_001204466.1	71	cAg/cGg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	111	401	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	44	386	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	92	488	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039610	47039610	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			43	17	142	0	ENST00000329236.7:c.829-1G>A		p.X277_splice	ENST00000329236	NM_001204466.1	277						NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100845	27100845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	44	487	0	ENST00000324856.7:c.4127C>T	p.Thr1376Ile	p.T1376I	ENST00000324856	NM_006015.4	1376	aCa/aTa					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143081511	143081511	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	14	316	0	ENST00000262992.4:c.1563G>T	p.Trp521Cys	p.W521C	ENST00000262992	NM_001101669.1	521	tgG/tgT					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117677879	117677879	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	51	519	1	ENST00000368508.3:c.4054A>T	p.Ile1352Leu	p.I1352L	ENST00000368508	NM_002944.2	1352	Ata/Tta					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162622184	162622184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	15	370	0	ENST00000366898.1:c.513G>T	p.Gln171His	p.Q171H	ENST00000366898	NM_004562.2	171	caG/caT					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518344	8518344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	79	252	0	ENST00000356435.5:c.1047G>T	p.Glu349Asp	p.E349D	ENST00000356435		349	gaG/gaT					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118390479	118390479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	62	396	0	ENST00000534358.1:c.11293G>T	p.Gly3765Cys	p.G3765C	ENST00000534358	NM_005933.3	3765	Ggc/Tgc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112138	115112138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	16	529	0	ENST00000257566.3:c.1602G>T	p.Met534Ile	p.M534I	ENST00000257566	NM_016569.3	534	atG/atT					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10274126	10274126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	14	369	0	ENST00000330684.3:c.143A>T	p.Glu48Val	p.E48V	ENST00000330684	NM_001134407.1	48	gAg/gTg					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1627372	1627372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	50	517	0	ENST00000344749.5:c.352G>T	p.Gly118Cys	p.G118C	ENST00000344749	NM_001136139.2	118	Ggc/Tgc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15296102	15296102	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	57	524	0	ENST00000263388.2:c.2262G>T	p.Met754Ile	p.M754I	ENST00000263388	NM_000435.2	754	atG/atT					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2222282	2222283	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0007696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	63	442	1	ENST00000326181.6:c.566_567delinsTT	p.Arg189Leu	p.R189L	ENST00000326181	NM_032271.2	189	cGG/cTT					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9943709	9943709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	142	554	1	ENST00000330684.3:c.1232T>C	p.Leu411Pro	p.L411P	ENST00000330684	NM_001134407.1	411	cTg/cCg					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81990337	81990337	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	140	861	0	ENST00000359376.3:c.3608T>C	p.Leu1203Pro	p.L1203P	ENST00000359376	NM_002661.3	1203	cTg/cCg					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45873792	45873792	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0005047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	233	458	1	ENST00000391945.4:c.5+2T>A		p.X2_splice	ENST00000391945	NM_000400.3	2						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578503	7578507	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGG	CAGGG	-			P-0005047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	282	796	0	ENST00000269305.4:c.423_427del	p.Pro142AlafsTer5	p.P142Afs*5	ENST00000269305	NM_001126112.2	141	tgCCCTGtg/tgtg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212537911	212537911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	517	568	2	ENST00000342788.4:c.1694G>A	p.Gly565Asp	p.G565D	ENST00000342788	NM_005235.2	565	gGc/gAc					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71247472	71247472	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	1180	624	0	ENST00000318789.4:c.61G>T	p.Gly21Cys	p.G21C	ENST00000318789	NM_032682.5	21	Ggc/Tgc					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247367	153247367	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	387	354	0	ENST00000281708.4:c.1435C>G	p.Arg479Gly	p.R479G	ENST00000281708	NM_033632.3	479	Cga/Gga					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138202269	138202269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	613	558	0	ENST00000237289.4:c.2186G>A	p.Ser729Asn	p.S729N	ENST00000237289	NM_001270507.1	729	aGc/aAc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508990	106508990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	488	481	0	ENST00000359195.3:c.984C>A	p.Asp328Glu	p.D328E	ENST00000359195	NM_002649.2	328	gaC/gaA					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57864853	57864853	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1392	1033	1089	2	ENST00000228682.2:c.2330A>T	p.Gln777Leu	p.Q777L	ENST00000228682	NM_005269.2	777	cAa/cTa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	911	751	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39617654	39617654	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	3298	461	0	ENST00000262039.4:c.1840-2A>T		p.X614_splice	ENST00000262039	NM_002647.2	614						NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5229527	5229527	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	437	177	0	ENST00000357368.4:c.2324A>G	p.Lys775Arg	p.K775R	ENST00000357368	NM_002850.3	775	aAg/aGg					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099134	157099135	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	212	205	0	ENST00000346085.5:c.74_75del	p.Leu25GlnfsTer206	p.L25Qfs*206	ENST00000346085	NM_020732.3	24	gCT/g					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29576098	29576098	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	624	797	0	ENST00000358273.4:c.4076del	p.Pro1359LeufsTer19	p.P1359Lfs*19	ENST00000358273	NM_001042492.2	1357	ttC/tt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0009680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	69	353	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221956	1221956	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	68	579	1	ENST00000326873.7:c.871G>T	p.Glu291Ter	p.E291*	ENST00000326873	NM_000455.4	291	Gag/Tag					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32178572	32178572	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	65	458	2	ENST00000375023.3:c.2822A>C	p.Asn941Thr	p.N941T	ENST00000375023	NM_004557.3	941	aAc/aCc					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12022806	12022806	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	20	278	0	ENST00000396373.4:c.912C>G	p.Ile304Met	p.I304M	ENST00000396373	NM_001987.4	304	atC/atG					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944785	31944785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	26	361	0	ENST00000340398.3:c.316G>C	p.Asp106His	p.D106H	ENST00000340398	NM_001013699.2	106	Gat/Cat					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59885848	59885848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	68	454	1	ENST00000259008.2:c.898G>A	p.Glu300Lys	p.E300K	ENST00000259008	NM_032043.2	300	Gaa/Aaa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023646	27023646	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	117	582	7	ENST00000324856.7:c.752C>T	p.Pro251Leu	p.P251L	ENST00000324856	NM_006015.4	251	cCg/cTg					NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139811068	139811068	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0006222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	85	753	0	ENST00000247668.2:c.678+1G>C		p.X226_splice	ENST00000247668	NM_021138.3	226						NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70342962	70342962	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	43	749	0	ENST00000374080.3:c.1503T>G	p.Asp501Glu	p.D501E	ENST00000374080		501	gaT/gaG					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188196	10188196	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0006222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	48	479	0	ENST00000256474.2:c.341-2del		p.X114_splice	ENST00000256474	NM_000551.3	114						NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52588836	52588836	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	69	718	0	ENST00000394830.3:c.4192del	p.Val1398LeufsTer34	p.V1398Lfs*34	ENST00000394830	NM_018313.4	1398	Gtt/tt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	149	514	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	113	601	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436320	52436327	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTAGGG	TTGTAGGG	-			P-0004940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	199	560	0	ENST00000460680.1:c.2167_2174del	p.Pro723GlyfsTer38	p.P723Gfs*38	ENST00000460680	NM_004656.3	723	CCCTACAAg/g					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	267	269	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	276	365	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	595	468	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212530163	212530163	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	53	467	0	ENST00000342788.4:c.1756G>T	p.Gly586Cys	p.G586C	ENST00000342788	NM_005235.2	586	Ggc/Tgc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142184010	142184010	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1212	177	559	0	ENST00000350721.4:c.6970A>G	p.Met2324Val	p.M2324V	ENST00000350721	NM_001184.3	2324	Atg/Gtg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112128142	112128142	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	135	363	0	ENST00000257430.4:c.646-1G>A		p.X216_splice	ENST00000257430	NM_000038.5	216						NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81609366	81609366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	277	685	1	ENST00000298171.2:c.964C>A	p.Leu322Ile	p.L322I	ENST00000298171	NM_000369.2	322	Ctc/Atc					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38510563	38510563	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1578	87	382	0	ENST00000254066.5:c.817A>T	p.Ile273Phe	p.I273F	ENST00000254066	NM_000964.3	273	Atc/Ttc					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10265378	10265378	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	82	374	0	ENST00000340748.4:c.1668T>G	p.Phe556Leu	p.F556L	ENST00000340748		556	ttT/ttG					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44929570	44929570	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	122	342	0	ENST00000377967.4:c.2670C>G	p.Tyr890Ter	p.Y890*	ENST00000377967	NM_021140.2	890	taC/taG					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	143	280	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149459760	149459760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	106	424	1	ENST00000286301.3:c.447G>A	p.Met149Ile	p.M149I	ENST00000286301	NM_005211.3	149	atG/atA					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42035298	42035298	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	111	644	0	ENST00000219905.7:c.5140A>G	p.Thr1714Ala	p.T1714A	ENST00000219905	NM_001164273.1	1714	Act/Gct					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	111	256	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0005251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	145	389	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212285253	212285253	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	163	719	0	ENST00000342788.4:c.3048G>C	p.Met1016Ile	p.M1016I	ENST00000342788	NM_005235.2	1016	atG/atC					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225379354	225379354	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	35	609	0	ENST00000264414.4:c.514G>A	p.Glu172Lys	p.E172K	ENST00000264414	NM_003590.4	172	Gag/Aag					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1803147	1803147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	199	738	2	ENST00000260795.2:c.499C>T	p.Pro167Ser	p.P167S	ENST00000260795		167	Ccg/Tcg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93955118	93955118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	280	976	0	ENST00000369303.4:c.2780C>T	p.Ser927Leu	p.S927L	ENST00000369303	NM_004440.3	927	tCa/tTa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151882717	151882717	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0005251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	40	212	0	ENST00000262189.6:c.5009-1G>C		p.X1670_splice	ENST00000262189	NM_170606.2	1670						NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151919124	151919124	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	37	530	0	ENST00000262189.6:c.3461C>G	p.Ser1154Ter	p.S1154*	ENST00000262189	NM_170606.2	1154	tCa/tGa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425806	49425806	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	196	482	0	ENST00000301067.7:c.12682C>T	p.Gln4228Ter	p.Q4228*	ENST00000301067	NM_003482.3	4228	Cag/Tag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49438728	49438728	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	263	682	0	ENST00000301067.7:c.4762G>T	p.Glu1588Ter	p.E1588*	ENST00000301067	NM_003482.3	1588	Gaa/Taa					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99192881	99192881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	250	700	0	ENST00000268035.6:c.71C>T	p.Ser24Leu	p.S24L	ENST00000268035	NM_000875.3	24	tCg/tTg					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29092917	29092917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005251-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	158	774	0	ENST00000328354.6:c.1067C>T	p.Ser356Leu	p.S356L	ENST00000328354	NM_007194.3	356	tCa/tTa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	109	608	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15366932	15366932	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	92	986	0	ENST00000263377.2:c.1694C>G	p.Ala565Gly	p.A565G	ENST00000263377	NM_058243.2	565	gCc/gGc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087360	27087360	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	63	463	0	ENST00000324856.7:c.1934C>G	p.Ser645Ter	p.S645*	ENST00000324856	NM_006015.4	645	tCa/tGa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	21	246	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528026	157528026	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	39	221	0	ENST00000346085.5:c.5751G>C	p.Lys1917Asn	p.K1917N	ENST00000346085	NM_020732.3	1917	aaG/aaC					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67482816	67482816	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	54	491	0	ENST00000327367.4:c.1220T>C	p.Leu407Pro	p.L407P	ENST00000327367	NM_005902.3	407	cTt/cCt					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15291576	15291576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	59	517	0	ENST00000263388.2:c.3058G>A	p.Ala1020Thr	p.A1020T	ENST00000263388	NM_000435.2	1020	Gcc/Acc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108214065	108214074	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCAGTGCC	TTTCAGTGCC	-	rs71855130		P-0009842-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	54	430	0	ENST00000278616.4:c.8395_8404delTTTCAGTGCC	p.Phe2799LysfsTer4	p.F2799Kfs*4	ENST00000278616	NM_000051.3	2795	gaTTTCAGTGCC/ga					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0005805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	131	600	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955432	48955432	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			17	157	378	0	ENST00000267163.4:c.1548G>A	p.Trp516Ter	p.W516*	ENST00000267163	NM_000321.2	516	tgG/tgA					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36252950	36252950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	90	475	0	ENST00000300305.3:c.412G>A	p.Glu138Lys	p.E138K	ENST00000300305		138	Gaa/Aaa					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41999981	42000035	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAGTACAGTTACCTTTGGCTCCAGCTACTAGCTTTCCTTTTTGGAACCTTACA	GGGAGTACAGTTACCTTTGGCTCCAGCTACTAGCTTTCCTTTTTGGAACCTTACA	-			P-0005805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	264	1087	2	ENST00000219905.7:c.2246_2300del	p.Gly749GlufsTer50	p.G749Efs*50	ENST00000219905	NM_001164273.1	748	ttGGGAGTACAGTTACCTTTGGCTCCAGCTACTAGCTTTCCTTTTTGGAACCTTACA/tt					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110248099	110248099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	120	465	0	ENST00000374672.4:c.1373G>T	p.Cys458Phe	p.C458F	ENST00000374672	NM_004235.4	458	tGc/tTc					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110248103	110248103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009190-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	123	463	0	ENST00000374672.4:c.1369C>G	p.Gln457Glu	p.Q457E	ENST00000374672	NM_004235.4	457	Cag/Gag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006544-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			418	880	785	0	ENST00000269305.4:c.839G>T	p.Arg280Ile	p.R280I	ENST00000269305	NM_001126112.2	280	aGa/aTa					NEWRECORD																																																																									
HIST1H3A	0	MSKCC	GRCh37	6	26020808	26020808	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006544-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1216	1344	1282	0	ENST00000357647.3:c.91C>G	p.Pro31Ala	p.P31A	ENST00000357647	NM_003529.2	31	Ccg/Gcg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48936984	48937002	+	frameshift_variant	Frame_Shift_Del	DEL	GAACACCCAGGCGAGGTCA	GAACACCCAGGCGAGGTCA	-			P-0006544-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			344	771	631	0	ENST00000267163.4:c.757_775del	p.Pro253GlyfsTer5	p.P253Gfs*5	ENST00000267163	NM_000321.2	251	cGAACACCCAGGCGAGGTCAg/cg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	105	347	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152382220	152382220	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	44	412	1	ENST00000206249.3:c.1330G>T	p.Glu444Ter	p.E444*	ENST00000206249	NM_000125.3	444	Gag/Tag					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110249896	110249896	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	24	164	2	ENST00000374672.4:c.779C>A	p.Pro260Gln	p.P260Q	ENST00000374672	NM_004235.4	260	cCg/cAg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118367047	118367047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	138	440	0	ENST00000534358.1:c.5629G>A	p.Ala1877Thr	p.A1877T	ENST00000534358	NM_005933.3	1877	Gcg/Acg					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57859626	57859626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	93	612	2	ENST00000228682.2:c.680G>A	p.Arg227His	p.R227H	ENST00000228682	NM_005269.2	227	cGt/cAt					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45860787	45860787	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	65	385	0	ENST00000391945.4:c.1322C>T	p.Ser441Leu	p.S441L	ENST00000391945	NM_000400.3	441	tCg/tTg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	281	419	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	197	228	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	197	228	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	197	228	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	735	541	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134920484	134920484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	313	487	1	ENST00000398015.3:c.2299C>T	p.Arg767Cys	p.R767C	ENST00000398015	NM_004441.4	767	Cgc/Tgc					NEWRECORD																																																																									
FAM175A	0	MSKCC	GRCh37	4	84391423	84391423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	208	353	0	ENST00000321945.7:c.409C>G	p.Pro137Ala	p.P137A	ENST00000321945	NM_139076.2	137	Cca/Gca					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40491348	40491348	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	353	638	1	ENST00000264657.5:c.452T>A	p.Val151Asp	p.V151D	ENST00000264657	NM_139276.2	151	gTc/gAc					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128829081	128829081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	11	25	0	ENST00000249373.3:c.89C>T	p.Ala30Val	p.A30V	ENST00000249373	NM_005631.4	30	gCg/gTg					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23652445	23652445	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	181	422	0	ENST00000261584.4:c.34G>T	p.Glu12Ter	p.E12*	ENST00000261584	NM_024675.3	12	Gag/Tag					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952141	178952141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	90	285	0	ENST00000263967.3:c.3196G>A	p.Ala1066Thr	p.A1066T	ENST00000263967	NM_006218.2	1066	Gca/Aca					NEWRECORD																																																																									
NPM1	0	MSKCC	GRCh37	5	170827901	170827901	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	152	396	0	ENST00000296930.5:c.641C>G	p.Ser214Ter	p.S214*	ENST00000296930	NM_002520.6	214	tCa/tGa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207203	1207203	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	150	201	0	ENST00000326873.7:c.290+1G>A		p.X97_splice	ENST00000326873	NM_000455.4	97						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600474	10600474	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	185	329	0	ENST00000171111.5:c.1381A>T	p.Ile461Phe	p.I461F	ENST00000171111	NM_203500.1	461	Atc/Ttc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	38	601	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0009514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	124	645	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	31	587	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578528	7578528	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	102	505	0	ENST00000269305.4:c.402T>G	p.Phe134Leu	p.F134L	ENST00000269305	NM_001126112.2	134	ttT/ttG					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12032574	12032574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	95	475	0	ENST00000353533.5:c.1010C>T	p.Ser337Phe	p.S337F	ENST00000353533	NM_003010.3	337	tCc/tTc					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30038275	30038275	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0007794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	348	380	0	ENST00000338641.4:c.447+1G>A		p.X149_splice	ENST00000338641	NM_000268.3	149						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579356	7579366	+	frameshift_variant	Frame_Shift_Del	DEL	GACGGAAACCG	GACGGAAACCG	-			P-0007794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	330	343	0	ENST00000269305.4:c.321_331del	p.Phe109LeufsTer36	p.F109Lfs*36	ENST00000269305	NM_001126112.2	107	taCGGTTTCCGTCtg/tatg					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158622672	158622672	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2121	137	785	5	ENST00000263640.3:c.827G>A	p.Ser276Asn	p.S276N	ENST00000263640	NM_001105.4	276	aGt/aAt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187510167	187510167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	76	381	0	ENST00000441802.2:c.13346C>A	p.Pro4449Gln	p.P4449Q	ENST00000441802	NM_005245.3	4449	cCa/cAa					NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187539951	187539951	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs777631605		P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	126	411	0	ENST00000441802.2:c.7789C>T	p.Arg2597Ter	p.R2597*	ENST00000441802	NM_005245.3	2597	Cga/Tga					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	60	230	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1232	70	462	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	212	455	0	ENST00000288602.6:c.1798_1799delGTinsAG	p.Val600Arg	p.V600R	ENST00000288602	NM_004333.4	600	GTg/AGg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8524945	8524945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	92	529	1	ENST00000356435.5:c.659C>T	p.Pro220Leu	p.P220L	ENST00000356435		220	cCt/cTt					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63845516	63845516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1985	124	490	0	ENST00000279873.7:c.1255C>T	p.Pro419Ser	p.P419S	ENST00000279873	NM_032199.2	419	Cca/Tca					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108165783	108165783	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	191	479	1	ENST00000278616.4:c.4906C>T	p.Gln1636Ter	p.Q1636*	ENST00000278616	NM_000051.3	1636	Cag/Tag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108204627	108204627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	47	287	0	ENST00000278616.4:c.7942C>T	p.Pro2648Ser	p.P2648S	ENST00000278616	NM_000051.3	2648	Cca/Tca					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88423503	88423503	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	174	542	1	ENST00000360948.2:c.2332G>A	p.Glu778Lys	p.E778K	ENST00000360948	NM_001012338.2	778	Gag/Aag					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88476406	88476406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	68	245	0	ENST00000360948.2:c.1726G>A	p.Asp576Asn	p.D576N	ENST00000360948	NM_001012338.2	576	Gat/Aat					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72830078	72830078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1641	252	774	0	ENST00000268489.5:c.6503A>G	p.Asn2168Ser	p.N2168S	ENST00000268489	NM_006885.3	2168	aAc/aGc					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39542596	39542596	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs138532795		P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1416	206	450	0	ENST00000262039.4:c.400G>A	p.Gly134Ser	p.G134S	ENST00000262039	NM_002647.2	134	Ggc/Agc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41385246	41385246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	151	531	1	ENST00000373198.4:c.715G>A	p.Val239Ile	p.V239I	ENST00000373198	NM_133170.3	239	Gtc/Atc					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46256361	46256361	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2767	307	818	0	ENST00000371998.3:c.589T>C	p.Cys197Arg	p.C197R	ENST00000371998		197	Tgc/Cgc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435312	49435312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	29	296	0	ENST00000301067.7:c.6241G>A	p.Glu2081Lys	p.E2081K	ENST00000301067	NM_003482.3	2081	Gag/Aag					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198265579	198265579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	60	621	0	ENST00000335508.6:c.2578G>A	p.Glu860Lys	p.E860K	ENST00000335508	NM_012433.2	860	Gaa/Aaa					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140434413	140434413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	65	582	1	ENST00000288602.6:c.2285C>T	p.Ala762Val	p.A762V	ENST00000288602	NM_004333.4	762	gCg/gTg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198265441	198265441	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	45	529	0	ENST00000335508.6:c.2716G>A	p.Glu906Lys	p.E906K	ENST00000335508	NM_012433.2	906	Gag/Aag					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142212050	142212050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	46	615	0	ENST00000350721.4:c.6002G>A	p.Arg2001Gln	p.R2001Q	ENST00000350721	NM_001184.3	2001	cGa/cAa					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57755698	57755698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	47	456	0	ENST00000274289.3:c.89C>G	p.Ser30Trp	p.S30W	ENST00000274289	NM_006622.3	30	tCg/tGg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176739	112176739	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	32	472	0	ENST00000257430.4:c.5448G>C	p.Leu1816Phe	p.L1816F	ENST00000257430	NM_000038.5	1816	ttG/ttC					NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36652213	36652213	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	35	373	0	ENST00000244741.5:c.335A>T	p.Asp112Val	p.D112V	ENST00000244741	NM_000389.4	112	gAc/gTc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151860550	151860550	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	86	722	0	ENST00000262189.6:c.10112C>G	p.Ser3371Ter	p.S3371*	ENST00000262189	NM_170606.2	3371	tCa/tGa					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371875	55371875	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	13	71	0	ENST00000297316.4:c.565C>A	p.Pro189Thr	p.P189T	ENST00000297316	NM_022454.3	189	Ccc/Acc					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	416189	416189	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	47	630	0	ENST00000399788.2:c.3997C>T	p.Arg1333Ter	p.R1333*	ENST00000399788	NM_001042603.1	1333	Cga/Tga					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2114289	2114289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	111	689	0	ENST00000219476.3:c.1460C>T	p.Ser487Leu	p.S487L	ENST00000219476	NM_000548.3	487	tCa/tTa					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3778204	3778204	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	27	350	0	ENST00000262367.5:c.6844G>C	p.Asp2282His	p.D2282H	ENST00000262367	NM_004380.2	2282	Gac/Cac					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56390390	56390390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1279	108	1191	2	ENST00000348428.3:c.1129G>A	p.Asp377Asn	p.D377N	ENST00000348428	NM_006785.3	377	Gac/Aac					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1621023	1621023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	102	1151	0	ENST00000344749.5:c.1037G>A	p.Ser346Asn	p.S346N	ENST00000344749	NM_001136139.2	346	aGc/aAc					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022616	31022616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	63	666	0	ENST00000375687.4:c.2101C>T	p.Pro701Ser	p.P701S	ENST00000375687	NM_015338.5	701	Cct/Tct					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46279766	46279766	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	55	534	0	ENST00000371998.3:c.3692G>C	p.Arg1231Thr	p.R1231T	ENST00000371998		1231	aGa/aCa					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48650445	48650445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	106	1038	1	ENST00000376670.3:c.415G>A	p.Glu139Lys	p.E139K	ENST00000376670	NM_002049.3	139	Gag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	176	202	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173830	112173830	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	193	245	0	ENST00000257430.4:c.2539G>T	p.Glu847Ter	p.E847*	ENST00000257430	NM_000038.5	847	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	239	265	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23539105	23539105	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	110	304	0	ENST00000380871.4:c.334G>T	p.Ala112Ser	p.A112S	ENST00000380871	NM_006167.3	112	Gcc/Tcc					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89347080	89347080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	249	259	2	ENST00000301030.4:c.5870C>T	p.Ala1957Val	p.A1957V	ENST00000301030	NM_001256183.1	1957	gCg/gTg					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410127	63410127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	187	283	0	ENST00000330258.3:c.3040G>C	p.Gly1014Arg	p.G1014R	ENST00000330258	NM_152424.3	1014	Ggg/Cgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	56	422	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	39	329	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	114	620	0	ENST00000269305.4:c.451C>G	p.Pro151Ala	p.P151A	ENST00000269305	NM_001126112.2	151	Ccc/Gcc					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152129241	152129241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	64	609	0	ENST00000206249.3:c.194C>T	p.Ala65Val	p.A65V	ENST00000206249	NM_000125.3	65	gCg/gTg					NEWRECORD																																																																									
CDKN2B	0	MSKCC	GRCh37	9	22006194	22006194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	65	503	2	ENST00000276925.6:c.209C>T	p.Ala70Val	p.A70V	ENST00000276925	NM_004936.3	70	gCg/gTg					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412569	63412569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	81	318	0	ENST00000330258.3:c.598G>A	p.Val200Ile	p.V200I	ENST00000330258	NM_152424.3	200	Gtc/Atc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	146	231	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	107	171	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18277007	18277007	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs146156161		P-0009203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	169	292	0	ENST00000222254.8:c.1454A>G	p.Asn485Ser	p.N485S	ENST00000222254	NM_005027.3	485	aAt/aGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	80	247	1	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	197	472	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999243	100999243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	155	633	0	ENST00000325455.5:c.559C>T	p.Arg187Trp	p.R187W	ENST00000325455	NM_001202474.3	187	Cgg/Tgg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	328	179	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578393	7578393	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	51	285	1	ENST00000269305.4:c.537T>A	p.His179Gln	p.H179Q	ENST00000269305	NM_001126112.2	179	caT/caA					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90976728	90976728	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	44	319	0	ENST00000265433.3:c.904C>G	p.Leu302Val	p.L302V	ENST00000265433	NM_002485.4	302	Ctt/Gtt					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533552	533552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	24	468	0	ENST00000311189.7:c.351G>T	p.Lys117Asn	p.K117N	ENST00000311189		117	aaG/aaT					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115120692	115120692	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	124	463	1	ENST00000257566.3:c.314T>A	p.Val105Glu	p.V105E	ENST00000257566	NM_016569.3	105	gTg/gAg					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46264821	46264821	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	72	643	0	ENST00000371998.3:c.1691A>G	p.Asn564Ser	p.N564S	ENST00000371998		564	aAt/aGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	24	299	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	534288	534288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004983-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	28	326	0	ENST00000311189.7:c.35G>A	p.Gly12Asp	p.G12D	ENST00000311189		12	gGc/gAc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	116	295	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	61	273	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	60	327	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174388	112174388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	37	248	1	ENST00000257430.4:c.3097G>A	p.Asp1033Asn	p.D1033N	ENST00000257430	NM_000038.5	1033	Gat/Aat					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624270	89624270	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	45	152	0	ENST00000371953.3:c.44G>A	p.Arg15Lys	p.R15K	ENST00000371953	NM_000314.4	15	aGa/aAa					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	110	311	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	29	378	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0009016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	34	438	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	84	371	1	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371722	55371722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	74	298	0	ENST00000297316.4:c.412C>T	p.Arg138Trp	p.R138W	ENST00000297316	NM_022454.3	138	Cgg/Tgg					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89448582	89448582	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000689-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	138	464	0	ENST00000336596.2:c.1546G>C	p.Gly516Arg	p.G516R	ENST00000336596	NM_005233.5	516	Gga/Cga					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220718	1220718	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0000689-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			438	169	328	0	ENST00000326873.7:c.734+2T>G		p.X245_splice	ENST00000326873	NM_000455.4	245						NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24143190	24143190	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0000689-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			872	123	415	0	ENST00000263121.7:c.422A>T	p.His141Leu	p.H141L	ENST00000263121	NM_003073.3	141	cAc/cTc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	191	438	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045718	47045718	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	175	246	0	ENST00000329236.7:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000329236	NM_001204466.1	789	Cag/Tag					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78428527	78428527	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	37	470	0	ENST00000370768.2:c.1272G>C	p.Met424Ile	p.M424I	ENST00000370768	NM_003902.3	424	atG/atC					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156851274	156851274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	59	444	0	ENST00000524377.1:c.2231G>A	p.Arg744His	p.R744H	ENST00000524377	NM_002529.3	744	cGt/cAt					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25991706	25991706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	66	380	0	ENST00000435504.4:c.536A>G	p.Gln179Arg	p.Q179R	ENST00000435504		179	cAg/cGg					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47702410	47702410	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	85	186	0	ENST00000233146.2:c.2005+1G>T		p.X669_splice	ENST00000233146	NM_000251.2	669						NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521670	89521670	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	45	495	1	ENST00000336596.2:c.2747C>A	p.Thr916Lys	p.T916K	ENST00000336596	NM_005233.5	916	aCa/aAa					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131895051	131895051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	88	254	0	ENST00000265335.6:c.205G>T	p.Asp69Tyr	p.D69Y	ENST00000265335		69	Gat/Tat					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30670945	30670945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	148	511	1	ENST00000376406.3:c.5801C>T	p.Thr1934Ile	p.T1934I	ENST00000376406	NM_014641.2	1934	aCa/aTa					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509340	106509340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	52	484	1	ENST00000359195.3:c.1334C>A	p.Ala445Asp	p.A445D	ENST00000359195	NM_002649.2	445	gCc/gAc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8507340	8507340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	25	536	0	ENST00000356435.5:c.1638C>A	p.Asn546Lys	p.N546K	ENST00000356435		546	aaC/aaA					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110250173	110250173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	57	282	0	ENST00000374672.4:c.502G>T	p.Gly168Cys	p.G168C	ENST00000374672	NM_004235.4	168	Ggc/Tgc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425496	49425496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	38	701	1	ENST00000301067.7:c.12992C>T	p.Pro4331Leu	p.P4331L	ENST00000301067	NM_003482.3	4331	cCc/cTc					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39647351	39647351	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	74	507	1	ENST00000262039.4:c.2524-1G>T		p.X842_splice	ENST00000262039	NM_002647.2	842						NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11144114	11144114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	38	491	1	ENST00000344626.4:c.3695G>A	p.Gly1232Asp	p.G1232D	ENST00000344626	NM_003072.3	1232	gGc/gAc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15285135	15285135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	156	432	0	ENST00000263388.2:c.4480G>T	p.Gly1494Cys	p.G1494C	ENST00000263388	NM_000435.2	1494	Ggc/Tgc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044587	47044587	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	35	220	0	ENST00000329236.7:c.1850C>G	p.Ala617Gly	p.A617G	ENST00000329236	NM_001204466.1	617	gCc/gGc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70345913	70345913	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	35	259	0	ENST00000374080.3:c.2450G>T	p.Arg817Leu	p.R817L	ENST00000374080		817	cGc/cTc					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16082361	16082361	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	29	413	0	ENST00000281043.3:c.179del	p.Pro60ArgfsTer71	p.P60Rfs*71	ENST00000281043	NM_005378.4	59	Ccc/cc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	82	325	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	101	300	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142184042	142184042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	107	323	0	ENST00000350721.4:c.6938C>G	p.Ser2313Cys	p.S2313C	ENST00000350721	NM_001184.3	2313	tCt/tGt					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55129934	55129934	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	126	509	0	ENST00000257290.5:c.468G>C	p.Glu156Asp	p.E156D	ENST00000257290	NM_006206.4	156	gaG/gaC					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29911155	29911155	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	75	229	0	ENST00000376809.5:c.454G>T	p.Glu152Ter	p.E152*	ENST00000376809	NM_002116.7	152	Gag/Tag					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162864461	162864461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	61	463	0	ENST00000366898.1:c.52G>C	p.Asp18His	p.D18H	ENST00000366898	NM_004562.2	18	Gat/Cat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	111	583	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	19	516	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0008730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	42	617	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	138	660	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	71	557	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138431100	138431100	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	44	717	0	ENST00000289153.2:c.1349G>A	p.Gly450Glu	p.G450E	ENST00000289153	NM_006219.2	450	gGa/gAa					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45368213	45368213	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	244	542	1	ENST00000262160.6:c.1389C>A	p.Cys463Ter	p.C463*	ENST00000262160	NM_005901.5	463	tgC/tgA					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221229	1221229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1223	115	989	0	ENST00000326873.7:c.752G>T	p.Gly251Val	p.G251V	ENST00000326873	NM_000455.4	251	gGt/gTt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187540123	187540123	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	81	840	0	ENST00000441802.2:c.7617del	p.Arg2539SerfsTer4	p.R2539Sfs*4	ENST00000441802	NM_005245.3	2539	agA/ag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	309	368	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696708	47696708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	152	406	0	ENST00000347630.2:c.240C>G	p.Ser80Arg	p.S80R	ENST00000347630	NM_001007230.1	80	agC/agG					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	571	175	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	571	175	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65316512	65316512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	40	317	1	ENST00000342505.4:c.1730G>A	p.Arg577Gln	p.R577Q	ENST00000342505	NM_002227.2	577	cGg/cAg					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412310	63412337	+	frameshift_variant	Frame_Shift_Del	DEL	CTATGGGGCTCCTCTAGGCTACTGGCTT	CTATGGGGCTCCTCTAGGCTACTGGCTT	-			P-0007155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	39	546	0	ENST00000330258.3:c.830_857del	p.Glu277AlafsTer8	p.E277Afs*8	ENST00000330258	NM_152424.3	277	gAAGCCAGTAGCCTAGAGGAGCCCCATAGc/gc					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971028	21971028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	571	175	0	ENST00000304494.5:c.330G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tgG/tgA					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66217274	66217274	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	70	341	0	ENST00000273854.3:c.2341C>A	p.Leu781Met	p.L781M	ENST00000273854	NM_004439.5	781	Ctg/Atg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10599904	10599904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	401	472	0	ENST00000171111.5:c.1672G>A	p.Gly558Arg	p.G558R	ENST00000171111	NM_203500.1	558	Ggg/Agg					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47422367	47422367	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0006950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	360	484	0	ENST00000377045.4:c.1A>G	p.Met1?	p.M1?	ENST00000377045	NM_001654.4	1	Atg/Gtg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183725	10183725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	184	416	0	ENST00000256474.2:c.194C>T	p.Ser65Leu	p.S65L	ENST00000256474	NM_000551.3	65	tCg/tTg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164505	47164505	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	21	483	0	ENST00000409792.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000409792	NM_014159.6	541	Cga/Tga					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106513294	106513294	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	33	428	0	ENST00000359195.3:c.2198C>G	p.Thr733Ser	p.T733S	ENST00000359195	NM_002649.2	733	aCc/aGc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	95	394	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176145125	176145125	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	81	408	0	ENST00000367669.3:c.486G>C	p.Gln162His	p.Q162H	ENST00000367669	NM_022457.5	162	caG/caC					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176523100	176523100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	150	386	0	ENST00000292408.4:c.1864G>C	p.Glu622Gln	p.E622Q	ENST00000292408	NM_213647.1	622	Gag/Cag					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2215902	2215902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1877	208	597	0	ENST00000326181.6:c.104G>A	p.Gly35Glu	p.G35E	ENST00000326181	NM_032271.2	35	gGa/gAa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68845585	68845585	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0009966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	161	298	0	ENST00000261769.5:c.833-2A>T		p.X278_splice	ENST00000261769	NM_004360.3	278						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0004958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	400	551	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188854	32188854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	339	573	1	ENST00000375023.3:c.700C>T	p.Arg234Trp	p.R234W	ENST00000375023	NM_004557.3	234	Cgg/Tgg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444125	49444130	+	inframe_deletion	In_Frame_Del	DEL	TTCAGG	TTCAGG	-			P-0004958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	140	659	0	ENST00000301067.7:c.3241_3246delCCTGAA	p.Pro1081_Glu1082del	p.P1081_E1082del	ENST00000301067	NM_003482.3	1081	CCTGAA/-					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89346485	89346485	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004958-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1146	90	894	0	ENST00000301030.4:c.6465delC	p.Val2156TrpfsTer19	p.V2156Wfs*19	ENST00000301030	NM_001256183.1	2155	ccC/cc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	286	316	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5221123	5221123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	81	348	1	ENST00000357368.4:c.3343G>A	p.Ala1115Thr	p.A1115T	ENST00000357368	NM_002850.3	1115	Gcc/Acc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576863	7576863	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	148	320	0	ENST00000269305.4:c.983del	p.Phe328SerfsTer17	p.F328Sfs*17	ENST00000269305	NM_001126112.2	328	tTc/tc					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128850272	128850272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	178	416	1	ENST00000249373.3:c.1535G>T	p.Arg512Leu	p.R512L	ENST00000249373	NM_005631.4	512	cGc/cTc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29687512	29687512	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	60	286	0	ENST00000358273.4:c.8168A>G	p.Gln2723Arg	p.Q2723R	ENST00000358273	NM_001042492.2	2723	cAa/cGa					NEWRECORD																																																																									
CRKL	0	MSKCC	GRCh37	22	21304092	21304092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	150	404	0	ENST00000354336.3:c.871G>A	p.Val291Ile	p.V291I	ENST00000354336	NM_005207.3	291	Gtc/Atc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	426	339	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	93	367	0	ENST00000373198.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000373198	NM_133170.3	546	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578507	7578507	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	215	359	1	ENST00000269305.4:c.423C>A	p.Cys141Ter	p.C141*	ENST00000269305	NM_001126112.2	141	tgC/tgA					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974777	21974899	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	GCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCT	GCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCT	-			P-0006371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	122	126	0	ENST00000304494.5:c.-73_50delAGGGTGGGGCGGACCGCGTGCGCTCGGCGGCTGCGGAGAGGGGGAGAGCAGGCAGCGGGCGGCGGGGAGCAGCATGGAGCCGGCGGCGGGGAGCAGCATGGAGCCTTCGGCTGACTGGCTGGC		p.*25*	ENST00000304494	NM_000077.4	25						NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974777	21974899	+	coding_sequence_variant,5_prime_UTR_variant	In_Frame_Del	DEL	GCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCT	GCCAGCCAGTCAGCCGAAGGCTCCATGCTGCTCCCCGCCGCCGGCTCCATGCTGCTCCCCGCCGCCCGCTGCCTGCTCTCCCCCTCTCCGCAGCCGCCGAGCGCACGCGGTCCGCCCCACCCT	-			P-0006371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	122	126	0	ENST00000304494.5:c.-73_50delAGGGTGGGGCGGACCGCGTGCGCTCGGCGGCTGCGGAGAGGGGGAGAGCAGGCAGCGGGCGGCGGGGAGCAGCATGGAGCCGGCGGCGGGGAGCAGCATGGAGCCTTCGGCTGACTGGCTGGC		p.*25*	ENST00000304494	NM_000077.4	25						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7573999	7573999	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0003289-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			194	646	455	0	ENST00000269305.4:c.1028delA	p.Glu343GlyfsTer2	p.E343Gfs*2	ENST00000269305	NM_001126112.2	343	gAg/gg					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36937937	36937937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003289-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			849	99	473	2	ENST00000361632.4:c.899C>T	p.Ala300Val	p.A300V	ENST00000361632		300	gCc/gTc					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49935584	49935584	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003289-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			725	447	472	0	ENST00000296474.3:c.1780T>A	p.Phe594Ile	p.F594I	ENST00000296474	NM_002447.2	594	Ttc/Atc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49443896	49443896	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003289-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			766	247	332	0	ENST00000301067.7:c.3475G>C	p.Glu1159Gln	p.E1159Q	ENST00000301067	NM_003482.3	1159	Gag/Cag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32930687	32930687	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003289-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			138	508	316	0	ENST00000380152.3:c.7558C>T	p.Arg2520Ter	p.R2520*	ENST00000380152		2520	Cga/Tga					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29130561	29130561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003289-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	314	399	0	ENST00000328354.6:c.149G>C	p.Ser50Thr	p.S50T	ENST00000328354	NM_007194.3	50	aGc/aCc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045186	47045186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003289-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			512	249	356	0	ENST00000329236.7:c.2193G>A	p.Met731Ile	p.M731I	ENST00000329236	NM_001204466.1	731	atG/atA					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	227	446	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183724	10183724	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	60	469	0	ENST00000256474.2:c.193T>C	p.Ser65Pro	p.S65P	ENST00000256474	NM_000551.3	65	Tcg/Ccg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441255	52441255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	67	549	2	ENST00000460680.1:c.515G>A	p.Ser172Asn	p.S172N	ENST00000460680	NM_004656.3	172	aGc/aAc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2222200	2222200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	56	512	0	ENST00000398665.3:c.3032G>A	p.Arg1011Gln	p.R1011Q	ENST00000398665	NM_032482.2	1011	cGg/cAg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70352765	70352765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	142	361	1	ENST00000374080.3:c.4486C>T	p.Arg1496Cys	p.R1496C	ENST00000374080		1496	Cgc/Tgc					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32456600	32456600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	60	68	0	ENST00000332351.3:c.292G>A	p.Gly98Ser	p.G98S	ENST00000332351	NM_024426.4	98	Ggc/Agc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	192	752	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	138	546	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa					NEWRECORD																																																																									
VEGFA	0	MSKCC	GRCh37	6	43748480	43748480	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	213	857	1	ENST00000523873.1:c.434G>A	p.Arg145Gln	p.R145Q	ENST00000523873		145	cGa/cAa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139404264	139404264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	128	620	0	ENST00000277541.6:c.2890G>A	p.Val964Met	p.V964M	ENST00000277541	NM_017617.3	964	Gtg/Atg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5212457	5212457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	127	680	0	ENST00000357368.4:c.4660G>A	p.Ala1554Thr	p.A1554T	ENST00000357368	NM_002850.3	1554	Gcg/Acg					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71096124	71096124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009991-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	191	311	1	ENST00000318789.4:c.633G>T	p.Gln211His	p.Q211H	ENST00000318789	NM_032682.5	211	caG/caT					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063628	67063628	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0009991-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	281	263	0	ENST00000412916.2:c.79-2A>G		p.X27_splice	ENST00000412916		27						NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100676	27100983	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAAAAGACAATTTGTTAAGGTGATTCCCATGTTTTCTTGGAGTCTGTGTCCACCAAGCATCTGGTTGTAGCCATCTTGGCATCTGTGGGCTTTATGTCCCTGAGTGCAGAGTATTAACTTCCCCTCTGCTTGTCTCTGCCTTAGAATTACAAGCGGCCAATGGATGGCACATATGGCCCTCCTGCCAAGCGGCACGAAGGGGAGATGTACAGCGTGCCATACAGCACTGGGCAGGGGCAGCCTCAGCAGCAGCAGTTGCCCCCAGCCCAGCCCCAGCCTGCCAGCCAGCAACAAGCTGCCCAGCCTTC	CAAAAGACAATTTGTTAAGGTGATTCCCATGTTTTCTTGGAGTCTGTGTCCACCAAGCATCTGGTTGTAGCCATCTTGGCATCTGTGGGCTTTATGTCCCTGAGTGCAGAGTATTAACTTCCCCTCTGCTTGTCTCTGCCTTAGAATTACAAGCGGCCAATGGATGGCACATATGGCCCTCCTGCCAAGCGGCACGAAGGGGAGATGTACAGCGTGCCATACAGCACTGGGCAGGGGCAGCCTCAGCAGCAGCAGTTGCCCCCAGCCCAGCCCCAGCCTGCCAGCCAGCAACAAGCTGCCCAGCCTTC	-			P-0009991-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	101	72	0	ENST00000324856.7:c.4102-143_4266del		p.X1368_splice	ENST00000324856	NM_006015.4	1368						NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128752729	128752731	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0009991-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	193	279	0	ENST00000377970.2:c.892_894delTCT	p.Ser298del	p.S298del	ENST00000377970	NM_002467.4	297	cCTTct/cct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	294	113	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	24	138	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108199854	108199854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	27	157	0	ENST00000278616.4:c.7196A>G	p.Gln2399Arg	p.Q2399R	ENST00000278616	NM_000051.3	2399	cAa/cGa					NEWRECORD																																																																									
TNFRSF14	0	MSKCC	GRCh37	1	2491400	2491400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	17	178	0	ENST00000355716.4:c.443A>G	p.Gln148Arg	p.Q148R	ENST00000355716	NM_003820.2	148	cAg/cGg					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220439907	220439907	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	48	290	0	ENST00000243786.2:c.760G>T	p.Glu254Ter	p.E254*	ENST00000243786	NM_002191.3	254	Gag/Tag					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242794961	242794961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	21	261	0	ENST00000334409.5:c.248C>A	p.Pro83His	p.P83H	ENST00000334409	NM_005018.2	83	cCc/cAc					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119631585	119631585	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	21	188	0	ENST00000316626.5:c.681G>T	p.Leu227Phe	p.L227F	ENST00000316626		227	ttG/ttT					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55240682	55240682	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	35	180	0	ENST00000275493.2:c.1926G>T	p.Lys642Asn	p.K642N	ENST00000275493	NM_005228.3	642	aaG/aaT					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81358975	81358975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	26	184	0	ENST00000222390.5:c.986G>T	p.Trp329Leu	p.W329L	ENST00000222390	NM_000601.4	329	tGg/tTg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89825095	89825095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	32	216	0	ENST00000389301.3:c.2871G>T	p.Trp957Cys	p.W957C	ENST00000389301	NM_000135.2	957	tgG/tgT					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40354789	40354789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	38	236	0	ENST00000293328.3:c.2115G>T	p.Lys705Asn	p.K705N	ENST00000293328	NM_012448.3	705	aaG/aaT					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36253011	36253011	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	17	100	0	ENST00000300305.3:c.352-1G>T		p.X118_splice	ENST00000300305		118						NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45655257	45655257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	13	153	0	ENST00000407780.3:c.595G>T	p.Val199Leu	p.V199L	ENST00000407780	NM_001283052.1	199	Gtg/Ttg					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53239902	53239902	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	47	267	0	ENST00000375401.3:c.1539G>T	p.Trp513Cys	p.W513C	ENST00000375401	NM_004187.3	513	tgG/tgT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	142	258	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151921520	151921520	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0007074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	14	56	0	ENST00000262189.6:c.3158G>T	p.Trp1053Leu	p.W1053L	ENST00000262189	NM_170606.2	1053	tGg/tTg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32954150	32954150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	120	228	0	ENST00000380152.3:c.9124G>A	p.Asp3042Asn	p.D3042N	ENST00000380152		3042	Gat/Aat					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602337	10602337	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	148	394	0	ENST00000171111.5:c.1241A>T	p.Asn414Ile	p.N414I	ENST00000171111	NM_203500.1	414	aAc/aTc					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36966645	36966645	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	90	306	0	ENST00000358127.4:c.681del	p.Leu228CysfsTer50	p.L228Cfs*50	ENST00000358127	NM_001280556.1	227	gaC/ga					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220643	1220662	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCCGAGATTGCCAACGG	CCGCCCGAGATTGCCAACGG	GCGC			P-0007074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	87	329	0	ENST00000326873.7:c.661_680delinsGCGC	p.Pro221AlafsTer61	p.P221Afs*61	ENST00000326873	NM_000455.4	221	CCGCCCGAGATTGCCAACGGc/GCGCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	347	508	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	125	240	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0007180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	159	452	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175328	112175328	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	284	344	0	ENST00000257430.4:c.4037C>A	p.Ser1346Ter	p.S1346*	ENST00000257430	NM_000038.5	1346	tCa/tAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	274	455	1	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55161324	55161324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	159	478	1	ENST00000257290.5:c.3155C>T	p.Thr1052Met	p.T1052M	ENST00000257290	NM_006206.4	1052	aCg/aTg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266821	198266821	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	154	519	2	ENST00000335508.6:c.2111T>C	p.Ile704Thr	p.I704T	ENST00000335508	NM_012433.2	704	aTc/aCc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15272446	15272446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1235	415	715	0	ENST00000263388.2:c.5993G>A	p.Arg1998His	p.R1998H	ENST00000263388	NM_000435.2	1998	cGt/cAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	58	296	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333844	70333844	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	335	457	0	ENST00000373644.4:c.1749G>C	p.Leu583Phe	p.L583F	ENST00000373644	NM_030625.2	583	ttG/ttC					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	69	510	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	54	628	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974770	21974775	+	inframe_deletion	In_Frame_Del	DEL	GGCCGT	GGCCGT	-			P-0005275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	23	290	0	ENST00000304494.5:c.52_57delACGGCC	p.Thr18_Ala19del	p.T18_A19del	ENST00000304494	NM_000077.4	18	ACGGCC/-					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974770	21974775	+	inframe_deletion	In_Frame_Del	DEL	GGCCGT	GGCCGT	-			P-0005275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	23	290	0	ENST00000304494.5:c.52_57delACGGCC	p.Thr18_Ala19del	p.T18_A19del	ENST00000304494	NM_000077.4	18	ACGGCC/-					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434179	49434179	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000067-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			400	315	678	0	ENST00000301067.7:c.7374G>T	p.Gln2458His	p.Q2458H	ENST00000301067	NM_003482.3	2458	caG/caT					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48947579	48947579	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0000067-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			59	795	546	1	ENST00000267163.4:c.1166T>A	p.Leu389Ter	p.L389*	ENST00000267163	NM_000321.2	389	tTa/tAa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2111969	2111969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000067-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			51	549	590	1	ENST00000219476.3:c.1217G>A	p.Arg406Lys	p.R406K	ENST00000219476	NM_000548.3	406	aGa/aAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0000067-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			42	410	422	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175630	112175630	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	220	663	1	ENST00000257430.4:c.4339C>T	p.Gln1447Ter	p.Q1447*	ENST00000257430	NM_000038.5	1447	Caa/Taa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696438	47696438	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	245	558	0	ENST00000347630.2:c.385A>G	p.Lys129Glu	p.K129E	ENST00000347630	NM_001007230.1	129	Aaa/Gaa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151853028	151853028	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	161	238	0	ENST00000262189.6:c.11927del	p.Pro3976GlnfsTer11	p.P3976Qfs*11	ENST00000262189	NM_170606.2	3976	cCa/ca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	592	715	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11319373	11319373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	200	556	0	ENST00000361445.4:c.94C>T	p.Arg32Trp	p.R32W	ENST00000361445	NM_004958.3	32	Cgg/Tgg					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48025849	48025849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	279	785	0	ENST00000234420.5:c.727C>T	p.Arg243Cys	p.R243C	ENST00000234420	NM_000179.2	243	Cgc/Tgc					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41749491	41749491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	135	450	0	ENST00000226382.2:c.304C>T	p.Arg102Cys	p.R102C	ENST00000226382	NM_003924.3	102	Cgc/Tgc					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58143236	58143236	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0005446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	394	482	0	ENST00000257904.6:c.683+1G>C		p.X228_splice	ENST00000257904	NM_000075.3	228						NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2108875	2108875	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0005446-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	204	514	0	ENST00000219476.3:c.975+1G>T		p.X325_splice	ENST00000219476	NM_000548.3	325						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	175	580	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188197	10188197	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	99	381	1	ENST00000256474.2:c.341-1G>T		p.X114_splice	ENST00000256474	NM_000551.3	114						NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	98	502	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134829	41134829	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	177	1050	1	ENST00000379561.5:c.799C>T	p.Arg267Ter	p.R267*	ENST00000379561	NM_002015.3	267	Cga/Tga					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41246062	41246062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	91	397	0	ENST00000357654.3:c.1486C>T	p.Arg496Cys	p.R496C	ENST00000357654	NM_007294.3	496	Cgt/Tgt					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41246457	41246457	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	107	594	0	ENST00000357654.3:c.1091C>G	p.Pro364Arg	p.P364R	ENST00000357654	NM_007294.3	364	cCt/cGt					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119666195	119666195	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	137	238	0	ENST00000316626.5:c.286C>G	p.Arg96Gly	p.R96G	ENST00000316626		96	Cga/Gga					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589630	67589630	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	323	338	0	ENST00000274335.5:c.1393A>T	p.Arg465Ter	p.R465*	ENST00000274335		465	Aga/Tga					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188392	32188392	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	185	266	0	ENST00000375023.3:c.949G>T	p.Glu317Ter	p.E317*	ENST00000375023	NM_004557.3	317	Gag/Tag					NEWRECORD																																																																									
PIM1	0	MSKCC	GRCh37	6	37139008	37139008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	269	283	0	ENST00000373509.5:c.348C>A	p.Phe116Leu	p.F116L	ENST00000373509	NM_002648.3	116	ttC/ttA					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117710892	117710892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1448	240	385	0	ENST00000368508.3:c.1380C>G	p.Ile460Met	p.I460M	ENST00000368508	NM_002944.2	460	atC/atG					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116371758	116371758	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs201980687		P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1248	241	331	0	ENST00000397752.3:c.1237C>A	p.Arg413Ser	p.R413S	ENST00000397752	NM_000245.2	413	Cgt/Agt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46211452	46211452	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	145	290	0	ENST00000334344.6:c.419-1G>C		p.X140_splice	ENST00000334344	NM_152641.2	140						NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42003303	42003303	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1259	414	600	0	ENST00000219905.7:c.2840C>G	p.Ser947Ter	p.S947*	ENST00000219905	NM_001164273.1	947	tCa/tGa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70361137	70361137	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	267	309	1	ENST00000374080.3:c.6325C>T	p.Gln2109Ter	p.Q2109*	ENST00000374080		2109	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577152	7577152	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	596	427	0	ENST00000269305.4:c.786del	p.Asn263IlefsTer82	p.N263Ifs*82	ENST00000269305	NM_001126112.2	262	ggT/gg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66201844	66201844	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	41	326	0	ENST00000273854.3:c.2659-1G>A		p.X887_splice	ENST00000273854	NM_004439.5	887						NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40743859	40743859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	46	594	1	ENST00000373198.4:c.3136C>T	p.Arg1046Cys	p.R1046C	ENST00000373198	NM_133170.3	1046	Cgc/Tgc					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81372780	81372780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	26	192	0	ENST00000222390.5:c.754G>A	p.Asp252Asn	p.D252N	ENST00000222390	NM_000601.4	252	Gac/Aac					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119103331	119103331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	233	362	0	ENST00000264033.4:c.369G>A	p.Met123Ile	p.M123I	ENST00000264033	NM_005188.3	123	atG/atA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577592	7577602	+	frameshift_variant	Frame_Shift_Del	DEL	GTACAGTCAGA	GTACAGTCAGA	-			P-0009416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	103	208	0	ENST00000269305.4:c.679_689del	p.Ser227HisfsTer9	p.S227Hfs*9	ENST00000269305	NM_001126112.2	227	TCTGACTGTACc/c					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	375	271	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	376	342	2	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	89	244	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30325742	30325742	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	167	211	0	ENST00000322652.5:c.1940T>G	p.Ile647Arg	p.I647R	ENST00000322652	NM_015355.2	647	aTa/aGa					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41223057	41223057	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	404	487	0	ENST00000357654.3:c.4874A>G	p.Tyr1625Cys	p.Y1625C	ENST00000357654	NM_007294.3	1625	tAt/tGt					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78899179	78899179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	213	227	0	ENST00000306801.3:c.2818G>A	p.Asp940Asn	p.D940N	ENST00000306801	NM_020761.2	940	Gac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	23	261	2	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173975	112173975	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	61	366	0	ENST00000257430.4:c.2684C>G	p.Ser895Ter	p.S895*	ENST00000257430	NM_000038.5	895	tCa/tGa					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3121098	3121098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	53	479	0	ENST00000078429.4:c.1001C>T	p.Thr334Met	p.T334M	ENST00000078429	NM_002067.2	334	aCg/aTg					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	106	371	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437262	52437262	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009961-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	172	650	0	ENST00000460680.1:c.1782del	p.Ser595ProfsTer22	p.S595Pfs*22	ENST00000460680	NM_004656.3	594	ggG/gg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	99	389	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27094351	27094351	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	68	463	0	ENST00000324856.7:c.3060delG	p.Lys1021ArgfsTer18	p.K1021Rfs*18	ENST00000324856	NM_006015.4	1020	aGg/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	74	530	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	230	299	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	50	238	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0007112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	114	365	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	78	247	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7984241	7984241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	82	360	2	ENST00000319144.4:c.488G>A	p.Arg163His	p.R163H	ENST00000319144	NM_001139.2	163	cGc/cAc					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30054221	30054221	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1185	147	452	0	ENST00000338641.4:c.643G>A	p.Glu215Lys	p.E215K	ENST00000338641	NM_000268.3	215	Gag/Aag					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65332828	65332828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	73	340	1	ENST00000342505.4:c.711G>T	p.Arg237Ser	p.R237S	ENST00000342505	NM_002227.2	237	agG/agT					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65332843	65332843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	63	335	2	ENST00000342505.4:c.696G>T	p.Arg232Ser	p.R232S	ENST00000342505	NM_002227.2	232	agG/agT					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	298	245	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	152	156	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	423	441	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243668558	243668558	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	269	280	0	ENST00000263826.5:c.1433G>A	p.Arg478Gln	p.R478Q	ENST00000263826	NM_005465.4	478	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577123	7577123	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	508	450	1	ENST00000269305.4:c.815T>A	p.Val272Glu	p.V272E	ENST00000269305	NM_001126112.2	272	gTg/gAg					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48030760	48030760	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	194	216	0	ENST00000234420.5:c.3374G>T	p.Gly1125Val	p.G1125V	ENST00000234420	NM_000179.2	1125	gGc/gTc					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29912309	29912309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	273	388	0	ENST00000376809.5:c.928G>A	p.Gly310Ser	p.G310S	ENST00000376809	NM_002116.7	310	Ggc/Agc					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30051619	30051619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	397	362	0	ENST00000338641.4:c.553G>A	p.Glu185Lys	p.E185K	ENST00000338641	NM_000268.3	185	Gag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	266	293	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	358	474	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023380	27023381	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0006626-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	94	176	0	ENST00000324856.7:c.487_488del	p.Ala163ArgfsTer236	p.A163Rfs*236	ENST00000324856	NM_006015.4	162	gcCGcc/gccc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	149	413	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	93	526	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	38	211	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
GRIN2A	2903	MSKCC	GRCh37	16	10032069	10032069	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs868215122		P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	114	673	0	ENST00000330684.3:c.754G>A	p.Asp252Asn	p.D252N	ENST00000330684	NM_001134407.1	252	Gat/Aat					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164268	47164268	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	71	437	0	ENST00000409792.3:c.1858C>T	p.Arg620Ter	p.R620*	ENST00000409792	NM_014159.6	620	Cga/Tga					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36252865	36252865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	85	387	0	ENST00000300305.3:c.497G>A	p.Arg166Gln	p.R166Q	ENST00000300305		166	cGa/cAa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55156675	55156675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	57	419	0	ENST00000257290.5:c.3076G>A	p.Asp1026Asn	p.D1026N	ENST00000257290	NM_006206.4	1026	Gac/Aac					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55961116	55961116	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	51	476	0	ENST00000263923.4:c.2824G>C	p.Gly942Arg	p.G942R	ENST00000263923	NM_002253.2	942	Ggg/Cgg					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38945638	38945638	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	109	432	0	ENST00000357387.3:c.4588G>A	p.Gly1530Ser	p.G1530S	ENST00000357387	NM_152756.3	1530	Ggt/Agt					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176665397	176665397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	133	507	1	ENST00000439151.2:c.4081C>T	p.Leu1361Phe	p.L1361F	ENST00000439151	NM_022455.4	1361	Ctt/Ttt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8486113	8486113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	90	504	0	ENST00000356435.5:c.2704G>A	p.Gly902Ser	p.G902S	ENST00000356435		902	Ggc/Agc					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98247986	98247986	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	135	422	0	ENST00000331920.6:c.565C>T	p.His189Tyr	p.H189Y	ENST00000331920	NM_000264.3	189	Cat/Tat					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99434610	99434610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	170	437	0	ENST00000268035.6:c.697C>T	p.Pro233Ser	p.P233S	ENST00000268035	NM_000875.3	233	Ccc/Tcc					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7216536	7216536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	169	721	0	ENST00000380728.2:c.799G>A	p.Asp267Asn	p.D267N	ENST00000380728		267	Gac/Aac					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40741023	40741023	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	86	534	0	ENST00000392038.2:c.1295C>T	p.Ser432Phe	p.S432F	ENST00000392038	NM_001626.4	432	tCc/tTc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42791557	42791557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	148	523	0	ENST00000575354.2:c.538G>A	p.Glu180Lys	p.E180K	ENST00000575354	NM_015125.3	180	Gaa/Aaa					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	253	342	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	139	405	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	345	443	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc					NEWRECORD																																																																									
EPCAM	0	MSKCC	GRCh37	2	47607058	47607058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	396	438	0	ENST00000263735.4:c.808G>T	p.Ala270Ser	p.A270S	ENST00000263735	NM_002354.2	270	Gct/Tct					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30686348	30686348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	128	255	0	ENST00000359013.4:c.279G>T	p.Met93Ile	p.M93I	ENST00000359013	NM_001024847.2	93	atG/atT					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138665383	138665383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	107	332	0	ENST00000330315.3:c.182C>T	p.Ala61Val	p.A61V	ENST00000330315	NM_023067.3	61	gCg/gTg					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153332936	153332936	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	141	220	0	ENST00000281708.4:c.20C>T	p.Ser7Phe	p.S7F	ENST00000281708	NM_033632.3	7	tCt/tTt					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157405905	157405905	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	60	301	4	ENST00000346085.5:c.2147C>T	p.Ala716Val	p.A716V	ENST00000346085	NM_020732.3	716	gCg/gTg					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986830	36986830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	77	85	0	ENST00000354822.5:c.859C>T	p.Arg287Cys	p.R287C	ENST00000354822	NM_001079668.2	287	Cgc/Tgc					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56438263	56438263	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	262	334	0	ENST00000407977.2:c.730del	p.Ala244ProfsTer175	p.A244Pfs*175	ENST00000407977		244	Gcc/cc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	332	480	1	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0008952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	85	390	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61121646	61121646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	39	362	1	ENST00000295025.8:c.268G>A	p.Glu90Lys	p.E90K	ENST00000295025	NM_002908.2	90	Gaa/Aaa					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131924444	131924444	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	90	429	0	ENST00000265335.6:c.1117T>G	p.Ser373Ala	p.S373A	ENST00000265335		373	Tct/Gct					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46268795	46268795	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	58	775	2	ENST00000371998.3:c.3080G>T	p.Arg1027Met	p.R1027M	ENST00000371998		1027	aGg/aTg					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	181	387	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0008283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	364	641	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165236	47165236	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	21	380	0	ENST00000409792.3:c.890A>C	p.Lys297Thr	p.K297T	ENST00000409792	NM_014159.6	297	aAg/aCg					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295313	1295313	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0008283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	34	512	1				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	75	162	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	277	268	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	339	397	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29041073	29041073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	128	350	0	ENST00000282397.4:c.355G>A	p.Glu119Lys	p.E119K	ENST00000282397	NM_002019.4	119	Gaa/Aaa					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	120	345	0	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	299	341	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117645576	117645576	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	162	491	0	ENST00000368508.3:c.5560G>A	p.Asp1854Asn	p.D1854N	ENST00000368508	NM_002944.2	1854	Gat/Aat					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37070361	37070361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	322	410	0	ENST00000231790.2:c.1496G>T	p.Arg499Met	p.R499M	ENST00000231790	NM_000249.3	499	aGg/aTg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165758	47165758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	367	459	0	ENST00000409792.3:c.368C>T	p.Thr123Ile	p.T123I	ENST00000409792	NM_014159.6	123	aCc/aTc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180056989	180056989	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	294	467	0	ENST00000261937.6:c.630G>A	p.Trp210Ter	p.W210*	ENST00000261937	NM_182925.4	210	tgG/tgA					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30673766	30673766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	488	343	0	ENST00000376406.3:c.3194C>T	p.Pro1065Leu	p.P1065L	ENST00000376406	NM_014641.2	1065	cCc/cTc					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729784	41729784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	228	520	0	ENST00000242208.4:c.745G>A	p.Glu249Lys	p.E249K	ENST00000242208	NM_002192.2	249	Gag/Aag					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106513177	106513177	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	223	254	0	ENST00000359195.3:c.2081T>A	p.Phe694Tyr	p.F694Y	ENST00000359195	NM_002649.2	694	tTt/tAt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140477861	140477861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	206	315	0	ENST00000288602.6:c.1447A>G	p.Lys483Glu	p.K483E	ENST00000288602	NM_004333.4	483	Aaa/Gaa					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93624537	93624537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	157	390	0	ENST00000375746.1:c.628G>A	p.Glu210Lys	p.E210K	ENST00000375746	NM_001174167.1	210	Gaa/Aaa					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135771689	135771689	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201867031		P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	392	359	0	ENST00000298552.3:c.3428C>T	p.Pro1143Leu	p.P1143L	ENST00000298552	NM_001162426.1	1143	cCg/cTg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133208969	133208969	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	230	403	0	ENST00000320574.5:c.6262C>T	p.Pro2088Ser	p.P2088S	ENST00000320574	NM_006231.2	2088	Cct/Tct					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32907102	32907102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	292	281	0	ENST00000380152.3:c.1487C>T	p.Ser496Phe	p.S496F	ENST00000380152		496	tCt/tTt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857299	9857299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	139	364	0	ENST00000330684.3:c.4102C>T	p.Leu1368Phe	p.L1368F	ENST00000330684	NM_001134407.1	1368	Ctc/Ttc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16068313	16068313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	68	88	0	ENST00000268712.3:c.598C>T	p.Leu200Phe	p.L200F	ENST00000268712	NM_006311.3	200	Ctt/Ttt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29684077	29684077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	168	326	1	ENST00000358273.4:c.7838C>T	p.Pro2613Leu	p.P2613L	ENST00000358273	NM_001042492.2	2613	cCg/cTg					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30325802	30325802	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	195	254	0	ENST00000322652.5:c.2000A>T	p.Asn667Ile	p.N667I	ENST00000322652	NM_015355.2	667	aAt/aTt					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215645606	215645607	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	189	294	0	ENST00000260947.4:c.991_992delinsTT	p.Pro331Phe	p.P331F	ENST00000260947	NM_000465.2	331	CCc/TTc					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120314	94120315	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	247	467	0	ENST00000369303.4:c.736_737delinsTT	p.Pro246Phe	p.P246F	ENST00000369303	NM_004440.3	246	CCc/TTc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108218088	108218089	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0009245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	144	259	0	ENST00000278616.4:c.8667_8668delinsAA	p.Asp2889_Leu2890delinsGluIle	p.D2889_L2890delinsEI	ENST00000278616	NM_000051.3	2889	gaTCta/gaAAta					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72427819	72428218	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAAGTAAGTTATGGATCAAAAACAGCTTCTGGCAGAATATCATCAATACGCACAAGACTTCATGACACTGTGGCAATGAATCCGAACTGCCTACCACACATGCCAAAGCCGACTACAGAGTGTGCTACTCAGTTTTAGCAATAATCCAACAAGCACGGATAGCAAAGCTTGGGACCAATGTAAAATTACTATTATCTGTTTCCTGTTCTGGCCACAGTATTTAAAAAAGAGAAAAAGTCACCAGCCCCACCCATACTTAGCTCTTCACCTTCTTAGCCTACAAACCCAAGGCACAAAACCACCCTGGATTCATGATTACGATTAAGTAAATCAGAGCAGTGATTTAGTATGTCATTCTAGTTTCCAAGTACCTTGAGGTGTGATTTGTTTCGCTGGTCT	TTAAGTAAGTTATGGATCAAAAACAGCTTCTGGCAGAATATCATCAATACGCACAAGACTTCATGACACTGTGGCAATGAATCCGAACTGCCTACCACACATGCCAAAGCCGACTACAGAGTGTGCTACTCAGTTTTAGCAATAATCCAACAAGCACGGATAGCAAAGCTTGGGACCAATGTAAAATTACTATTATCTGTTTCCTGTTCTGGCCACAGTATTTAAAAAAGAGAAAAAGTCACCAGCCCCACCCATACTTAGCTCTTCACCTTCTTAGCCTACAAACCCAAGGCACAAAACCACCCTGGATTCATGATTACGATTAAGTAAATCAGAGCAGTGATTTAGTATGTCATTCTAGTTTCCAAGTACCTTGAGGTGTGATTTGTTTCGCTGGTCT	-			P-0004826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	50	115	0	ENST00000477973.2:c.672_700-31del		p.X224_splice	ENST00000477973	NM_012234.5	224						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175847	112175848	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0004826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	134	335	0	ENST00000257430.4:c.4556_4557del	p.Asp1519GlyfsTer13	p.D1519Gfs*13	ENST00000257430	NM_000038.5	1519	gAT/g					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151835956	151835963	+	protein_altering_variant	In_Frame_Del	DEL	CACACAAT	CACACAAT	AC			P-0004826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	39	433	0	ENST00000262189.6:c.14561_14568delinsGT	p.Asn4854_Val4856delinsSer	p.N4854_V4856delinsS	ENST00000262189	NM_170606.2	4854	aATTGTGTG/aGT					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0007663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	524	411	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125357	47125357	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	287	700	0	ENST00000409792.3:c.5913A>C	p.Glu1971Asp	p.E1971D	ENST00000409792	NM_014159.6	1971	gaA/gaC					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119721036	119721036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	251	475	0	ENST00000316626.5:c.139G>T	p.Gly47Cys	p.G47C	ENST00000316626		47	Ggt/Tgt					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157517413	157517413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	188	389	1	ENST00000346085.5:c.3977G>A	p.Arg1326His	p.R1326H	ENST00000346085	NM_020732.3	1326	cGc/cAc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584569	48584569	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	185	400	0	ENST00000342988.3:c.742C>T	p.Gln248Ter	p.Q248*	ENST00000342988	NM_005359.5	248	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	727	537	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56111698	56111698	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	209	271	0	ENST00000399503.3:c.298G>T	p.Gly100Trp	p.G100W	ENST00000399503	NM_005921.1	100	Ggg/Tgg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169952	32169952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1344	394	690	0	ENST00000375023.3:c.3656G>A	p.Arg1219Gln	p.R1219Q	ENST00000375023	NM_004557.3	1219	cGg/cAg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47144891	47144891	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	99	503	1	ENST00000409792.3:c.4862G>T	p.Gly1621Val	p.G1621V	ENST00000409792	NM_014159.6	1621	gGa/gTa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112155011	112155011	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	168	505	0	ENST00000257430.4:c.1282G>T	p.Glu428Ter	p.E428*	ENST00000257430	NM_000038.5	428	Gaa/Taa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50468009	50468009	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	128	426	0	ENST00000331340.3:c.1244C>A	p.Thr415Asn	p.T415N	ENST00000331340	NM_006060.4	415	aCc/aAc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151845148	151845148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	149	554	0	ENST00000262189.6:c.13864G>A	p.Asp4622Asn	p.D4622N	ENST00000262189	NM_170606.2	4622	Gac/Aac					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41554444	41554444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	140	544	0	ENST00000263253.7:c.3530G>A	p.Cys1177Tyr	p.C1177Y	ENST00000263253	NM_001429.3	1177	tGc/tAc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15950267	15950268	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0008065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	141	600	0	ENST00000268712.3:c.6676_6677del	p.Met2226GlyfsTer8	p.M2226Gfs*8	ENST00000268712	NM_006311.3	2226	ATg/g					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191501	10191501	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	81	457	0	ENST00000256474.2:c.495del	p.Val166SerfsTer4	p.V166Sfs*4	ENST00000256474	NM_000551.3	165	gTt/gt					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	168	248	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151877154	151877154	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	96	327	0	ENST00000262189.6:c.7207C>T	p.Arg2403Ter	p.R2403*	ENST00000262189	NM_170606.2	2403	Cga/Tga					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437846	52437846	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	579	542	0	ENST00000460680.1:c.1315G>C	p.Val439Leu	p.V439L	ENST00000460680	NM_004656.3	439	Gtg/Ctg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	71	269	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162745588	162745588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	88	300	0	ENST00000367921.3:c.2003G>A	p.Arg668His	p.R668H	ENST00000367921	NM_006182.2	668	cGc/cAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0005250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	106	684	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	109	565	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954211	48954242	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAATTTTAGGTAAATTTTTTACTTTTAGTAA	AAAATTTTAGGTAAATTTTTTACTTTTAGTAA	-			P-0005250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1088	79	656	0	ENST00000267163.4:c.1420_1421+30del		p.X474_splice	ENST00000267163	NM_000321.2	474						NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575192	48575192	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	108	599	0	ENST00000342988.3:c.386A>G	p.Asn129Ser	p.N129S	ENST00000342988	NM_005359.5	129	aAt/aGt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	22	335	1	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23539042	23539042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	34	445	0	ENST00000380871.4:c.397C>G	p.His133Asp	p.H133D	ENST00000380871	NM_006167.3	133	Cac/Gac					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0009099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	838	284	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	887	540	0	ENST00000269305.4:c.841G>C	p.Asp281His	p.D281H	ENST00000269305	NM_001126112.2	281	Gac/Cac					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11188107	11188107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	375	293	0	ENST00000361445.4:c.5987A>C	p.Lys1996Thr	p.K1996T	ENST00000361445	NM_004958.3	1996	aAg/aCg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8499670	8499670	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	222	298	0	ENST00000356435.5:c.2299G>C	p.Asp767His	p.D767H	ENST00000356435		767	Gat/Cat					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760786	133760786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	185	406	1	ENST00000318560.5:c.3109G>A	p.Glu1037Lys	p.E1037K	ENST00000318560	NM_005157.4	1037	Gag/Aag					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63850801	63850801	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	348	518	1	ENST00000279873.7:c.1579G>T	p.Glu527Ter	p.E527*	ENST00000279873	NM_032199.2	527	Gag/Tag					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48947585	48947585	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	222	341	0	ENST00000267163.4:c.1172C>G	p.Ser391Ter	p.S391*	ENST00000267163	NM_000321.2	391	tCa/tGa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061684	38061684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	98	135	2	ENST00000250448.2:c.305C>A	p.Thr102Lys	p.T102K	ENST00000250448	NM_004496.3	102	aCg/aAg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72991815	72991815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	205	698	0	ENST00000268489.5:c.2230C>T	p.His744Tyr	p.H744Y	ENST00000268489	NM_006885.3	744	Cat/Tat					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89346752	89346752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	154	581	0	ENST00000301030.4:c.6198C>A	p.Phe2066Leu	p.F2066L	ENST00000301030	NM_001256183.1	2066	ttC/ttA					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44935940	44935940	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0009099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	344	389	0	ENST00000377967.4:c.2703-2A>G		p.X901_splice	ENST00000377967	NM_021140.2	901						NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044523	47044523	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	411	528	1	ENST00000329236.7:c.1786C>T	p.Gln596Ter	p.Q596*	ENST00000329236	NM_001204466.1	596	Cag/Tag					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	442	281	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	46	70	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140476745	140476745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	258	371	0	ENST00000288602.6:c.1661T>C	p.Ile554Thr	p.I554T	ENST00000288602	NM_004333.4	554	aTa/aCa					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5044421	5044421	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	577	442	0	ENST00000381652.3:c.369G>A	p.Trp123Ter	p.W123*	ENST00000381652	NM_004972.3	123	tgG/tgA					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77069983	77069983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	229	342	0	ENST00000356341.3:c.557C>T	p.Pro186Leu	p.P186L	ENST00000356341	NM_002576.4	186	cCa/cTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577098	7577098	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	255	529	0	ENST00000269305.4:c.840A>T	p.Arg280Ser	p.R280S	ENST00000269305	NM_001126112.2	280	agA/agT					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15374341	15374341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	59	408	0	ENST00000263377.2:c.1231G>A	p.Glu411Lys	p.E411K	ENST00000263377	NM_058243.2	411	Gag/Aag					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	343	466	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1262	78	705	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	765	455	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52610570	52610570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	611	662	2	ENST00000394830.3:c.3603G>A	p.Met1201Ile	p.M1201I	ENST00000394830	NM_018313.4	1201	atG/atA					NEWRECORD																																																																									
BCL10	0	MSKCC	GRCh37	1	85741985	85741985	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1534	1307	1224	0	ENST00000370580.1:c.51G>C	p.Lys17Asn	p.K17N	ENST00000370580	NM_003921.4	17	aaG/aaC					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48032825	48032825	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	314	571	0	ENST00000234420.5:c.3625C>G	p.Leu1209Val	p.L1209V	ENST00000234420	NM_000179.2	1209	Ctg/Gtg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437315	52437315	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	720	621	0	ENST00000460680.1:c.1730-1G>T		p.X577_splice	ENST00000460680	NM_004656.3	577						NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441431	52441431	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	413	667	2	ENST00000460680.1:c.421C>A	p.His141Asn	p.H141N	ENST00000460680	NM_004656.3	141	Cat/Aat					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52610584	52610584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	670	703	0	ENST00000394830.3:c.3589G>A	p.Glu1197Lys	p.E1197K	ENST00000394830	NM_018313.4	1197	Gaa/Aaa					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52610608	52610608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	690	711	1	ENST00000394830.3:c.3565G>A	p.Glu1189Lys	p.E1189K	ENST00000394830	NM_018313.4	1189	Gaa/Aaa					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189526305	189526305	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	546	289	0	ENST00000264731.3:c.569C>G	p.Ala190Gly	p.A190G	ENST00000264731	NM_003722.4	190	gCc/gGc					NEWRECORD																																																																									
FIP1L1	0	MSKCC	GRCh37	4	54280885	54280885	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	558	327	3	ENST00000337488.6:c.919C>A	p.Leu307Ile	p.L307I	ENST00000337488	NM_030917.3	307	Cta/Ata					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18473935	18473935	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	544	562	0	ENST00000266497.5:c.1177C>G	p.Leu393Val	p.L393V	ENST00000266497		393	Cta/Gta					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3820792	3820792	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	794	709	0	ENST00000262367.5:c.2659C>T	p.Gln887Ter	p.Q887*	ENST00000262367	NM_004380.2	887	Cag/Tag					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53230827	53230827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	980	435	1	ENST00000375401.3:c.1966G>A	p.Glu656Lys	p.E656K	ENST00000375401	NM_004187.3	656	Gag/Aag					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53230843	53230843	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	923	410	0	ENST00000375401.3:c.1950G>T	p.Lys650Asn	p.K650N	ENST00000375401	NM_004187.3	650	aaG/aaT					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53239625	53239625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	930	385	0	ENST00000375401.3:c.1717C>T	p.Pro573Ser	p.P573S	ENST00000375401	NM_004187.3	573	Ccc/Tcc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53239876	53239876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	1101	419	0	ENST00000375401.3:c.1565C>T	p.Ser522Phe	p.S522F	ENST00000375401	NM_004187.3	522	tCc/tTc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53239987	53239987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	1008	425	0	ENST00000375401.3:c.1454C>T	p.Ser485Phe	p.S485F	ENST00000375401	NM_004187.3	485	tCt/tTt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123185062	123185062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	11	756	1	ENST00000218089.9:c.1109G>A	p.Arg370Gln	p.R370Q	ENST00000218089	NM_001042749.1	370	cGg/cAg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939115	76939115	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	33	493	0	ENST00000373344.5:c.1633C>T	p.Gln545Ter	p.Q545*	ENST00000373344	NM_000489.3	545	Caa/Taa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101662	27101663	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	78	522	0	ENST00000324856.7:c.4948_4949del	p.Gln1650AlafsTer47	p.Q1650Afs*47	ENST00000324856	NM_006015.4	1648	gcCAca/gcca					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577330	64577333	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0006710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	140	645	0	ENST00000337652.1:c.249_252delGTCT	p.Ile85SerfsTer33	p.I85Sfs*33	ENST00000337652	NM_130803.2	83	ctGTCT/ct					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165172	47165172	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006710-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	30	417	0	ENST00000409792.3:c.954del	p.Gly320ValfsTer20	p.G320Vfs*20	ENST00000409792	NM_014159.6	318	ttT/tt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	173	365	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149459849	149459849	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	179	453	0	ENST00000286301.3:c.358G>C	p.Asp120His	p.D120H	ENST00000286301	NM_005211.3	120	Gac/Cac					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4385306	4385306	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	164	460	0	ENST00000261254.3:c.331A>C	p.Lys111Gln	p.K111Q	ENST00000261254	NM_001759.3	111	Aaa/Caa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	174	416	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974776	21974776	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	74	254	0	ENST00000304494.5:c.51del	p.Thr18ArgfsTer8	p.T18Rfs*8	ENST00000304494	NM_000077.4	17	gcC/gc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974776	21974776	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	74	254	0	ENST00000304494.5:c.51del	p.Thr18ArgfsTer8	p.T18Rfs*8	ENST00000304494	NM_000077.4	17	gcC/gc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	290	468	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	373	625	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209101894	209101894	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0008815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	73	448	0	ENST00000345146.2:c.1155-1G>C		p.X385_splice	ENST00000345146	NM_005896.2	385						NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89390071	89390071	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	58	414	0	ENST00000336596.2:c.820C>T	p.Arg274Ter	p.R274*	ENST00000336596	NM_005233.5	274	Cga/Tga					NEWRECORD																																																																									
SDHAF2	0	MSKCC	GRCh37	11	61205229	61205229	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	160	588	0	ENST00000301761.2:c.169G>T	p.Glu57Ter	p.E57*	ENST00000301761	NM_017841.2	57	Gag/Tag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858258	9858258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	50	565	1	ENST00000330684.3:c.3143G>A	p.Ser1048Asn	p.S1048N	ENST00000330684	NM_001134407.1	1048	aGc/aAc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15291807	15291807	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	41	494	0	ENST00000263388.2:c.2959A>G	p.Thr987Ala	p.T987A	ENST00000263388	NM_000435.2	987	Acc/Gcc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76952092	76952092	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	88	898	1	ENST00000373344.5:c.343G>T	p.Asp115Tyr	p.D115Y	ENST00000373344	NM_000489.3	115	Gat/Tat					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	305	381	2	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106861	27106861	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	123	269	0	ENST00000324856.7:c.6472C>T	p.Arg2158Ter	p.R2158*	ENST00000324856	NM_006015.4	2158	Cga/Tga					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138374251	138374251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	64	484	1	ENST00000289153.2:c.3193C>T	p.Arg1065Trp	p.R1065W	ENST00000289153	NM_006219.2	1065	Cgg/Tgg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692869	89692869	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	29	161	1	ENST00000371953.3:c.353A>T	p.His118Leu	p.H118L	ENST00000371953	NM_000314.4	118	cAt/cTt					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2226223	2226223	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	165	509	0	ENST00000398665.3:c.3704del	p.Pro1235GlnfsTer92	p.P1235Qfs*92	ENST00000398665	NM_032482.2	1235	Cca/ca					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593468	55593468	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	311	623	0	ENST00000288135.5:c.1625T>C	p.Ile542Thr	p.I542T	ENST00000288135	NM_000222.2	542	aTt/aCt					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5029809	5029809	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	54	598	0	ENST00000381652.3:c.253T>C	p.Phe85Leu	p.F85L	ENST00000381652	NM_004972.3	85	Ttt/Ctt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578520	7578525	+	inframe_deletion	In_Frame_Del	DEL	AGTTGG	AGTTGG	-			P-0009986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	529	588	0	ENST00000269305.4:c.405_410del	p.Cys135_Leu137delinsTrp	p.C135_L137delinsW	ENST00000269305	NM_001126112.2	135	tgCCAACTg/tgg					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153249478	153249496	+	frameshift_variant	Frame_Shift_Del	DEL	TGATGTTGTCTCTCATTTG	TGATGTTGTCTCTCATTTG	-			P-0009986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	202	516	0	ENST00000281708.4:c.1282_1300del	p.Gln428SerfsTer64	p.Q428Sfs*64	ENST00000281708	NM_033632.3	428	CAAATGAGAGACAACATCAtc/tc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	59	425	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	55	547	0	ENST00000269305.4:c.797G>A	p.Gly266Glu	p.G266E	ENST00000269305	NM_001126112.2	266	gGa/gAa					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204511935	204511935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	24	351	0	ENST00000367182.3:c.535G>A	p.Ala179Thr	p.A179T	ENST00000367182	NM_001278516.1	179	Gcc/Acc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55214404	55214404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	54	435	1	ENST00000275493.2:c.530C>T	p.Ser177Leu	p.S177L	ENST00000275493	NM_005228.3	177	tCg/tTg					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63532546	63532546	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	92	386	0	ENST00000307078.5:c.2033T>C	p.Leu678Pro	p.L678P	ENST00000307078	NM_004655.3	678	cTg/cCg					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45655349	45655349	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	186	421	0	ENST00000407780.3:c.503A>G	p.Asn168Ser	p.N168S	ENST00000407780	NM_001283052.1	168	aAc/aGc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437683	52437685	+	frameshift_variant	Frame_Shift_Del	DEL	GTA	GTA	T			P-0008146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	207	434	0	ENST00000460680.1:c.1476_1478delinsA	p.Ser492ArgfsTer6	p.S492Rfs*6	ENST00000460680	NM_004656.3	492	agTACa/agAa					NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	474	792	4	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	406	565	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	228	390	2	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	370	452	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023327	27023327	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	257	213	0	ENST00000324856.7:c.437del	p.Pro146GlnfsTer86	p.P146Qfs*86	ENST00000324856	NM_006015.4	145	Ccc/cc					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46231437	46231437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	455	542	4	ENST00000334344.6:c.1277C>T	p.Thr426Met	p.T426M	ENST00000334344	NM_152641.2	426	aCg/aTg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139405111	139405111	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201620358		P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	349	501	1	ENST00000277541.6:c.2734C>T	p.Arg912Trp	p.R912W	ENST00000277541	NM_017617.3	912	Cgg/Tgg					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	295	371	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72827732	72827732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	440	870	2	ENST00000268489.5:c.8849G>A	p.Arg2950His	p.R2950H	ENST00000268489	NM_006885.3	2950	cGc/cAc					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37687472	37687472	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	215	276	0	ENST00000447079.4:c.4382delG	p.Gly1461AlafsTer38	p.G1461Afs*38	ENST00000447079	NM_015083.1	1459	tGg/tg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425896	49425896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	446	604	0	ENST00000301067.7:c.12592C>T	p.Arg4198Ter	p.R4198*	ENST00000301067	NM_003482.3	4198	Cga/Tga					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185161405	185161405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	444	557	1	ENST00000265026.3:c.832C>T	p.Arg278Cys	p.R278C	ENST00000265026	NM_004721.4	278	Cgt/Tgt					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9787030	9787030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	395	571	1	ENST00000377346.4:c.3061G>A	p.Glu1021Lys	p.E1021K	ENST00000377346	NM_005026.3	1021	Gaa/Aaa					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15289908	15289908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	303	506	1	ENST00000263388.2:c.3646G>A	p.Ala1216Thr	p.A1216T	ENST00000263388	NM_000435.2	1216	Gcg/Acg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101057	27101057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	433	586	1	ENST00000324856.7:c.4339C>T	p.Pro1447Ser	p.P1447S	ENST00000324856	NM_006015.4	1447	Cca/Tca					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101294	27101294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	385	552	0	ENST00000324856.7:c.4576G>A	p.Val1526Met	p.V1526M	ENST00000324856	NM_006015.4	1526	Gtg/Atg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29416200	29416200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	355	624	1	ENST00000389048.3:c.4753G>A	p.Gly1585Ser	p.G1585S	ENST00000389048	NM_004304.4	1585	Ggc/Agc					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99189287	99189287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	176	292	0	ENST00000074304.5:c.2543G>A	p.Arg848Gln	p.R848Q	ENST00000074304	NM_001134224.1	848	cGg/cAg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630588	187630588	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	615	610	6	ENST00000441802.2:c.394C>T	p.Arg132Ter	p.R132*	ENST00000441802	NM_005245.3	132	Cga/Tga					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157505385	157505385	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	403	490	0	ENST00000346085.5:c.3366G>A	p.Trp1122Ter	p.W1122*	ENST00000346085	NM_020732.3	1122	tgG/tgA					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5073782	5073782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	316	370	0	ENST00000381652.3:c.1861G>A	p.Glu621Lys	p.E621K	ENST00000381652	NM_004972.3	621	Gag/Aag					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135771903	135771903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	344	429	0	ENST00000298552.3:c.3214G>A	p.Ala1072Thr	p.A1072T	ENST00000298552	NM_001162426.1	1072	Gcc/Acc					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67202552	67202552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	509	639	0	ENST00000312629.5:c.1361C>T	p.Pro454Leu	p.P454L	ENST00000312629	NM_003952.2	454	cCg/cTg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118375276	118375276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	341	497	0	ENST00000534358.1:c.8669G>A	p.Arg2890His	p.R2890H	ENST00000534358	NM_005933.3	2890	cGt/cAt					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111884756	111884756	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148319611		P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1286	127	1009	3	ENST00000341259.2:c.845G>A	p.Arg282Gln	p.R282Q	ENST00000341259	NM_005475.2	282	cGg/cAg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48878064	48878064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	212	283	0	ENST00000267163.4:c.16C>T	p.Pro6Ser	p.P6S	ENST00000267163	NM_000321.2	6	Ccc/Tcc					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	341244	341244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	330	570	2	ENST00000262320.3:c.2240C>T	p.Ala747Val	p.A747V	ENST00000262320	NM_003502.3	747	gCg/gTg					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	360013	360013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	397	661	0	ENST00000262320.3:c.1076G>A	p.Ser359Asn	p.S359N	ENST00000262320	NM_003502.3	359	aGc/aAc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72822346	72822346	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	486	999	3	ENST00000268489.5:c.9829C>T	p.Pro3277Ser	p.P3277S	ENST00000268489	NM_006885.3	3277	Ccc/Tcc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5220015	5220015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	230	411	0	ENST00000357368.4:c.3700C>T	p.Arg1234Trp	p.R1234W	ENST00000357368	NM_002850.3	1234	Cgg/Tgg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15292490	15292490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	384	597	2	ENST00000263388.2:c.2689G>A	p.Gly897Ser	p.G897S	ENST00000263388	NM_000435.2	897	Ggc/Agc					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18274078	18274078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	381	467	0	ENST00000222254.8:c.1296G>T	p.Gln432His	p.Q432H	ENST00000222254	NM_005027.3	432	caG/caT					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50912858	50912858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	458	788	2	ENST00000440232.2:c.2089G>A	p.Ala697Thr	p.A697T	ENST00000440232	NM_002691.3	697	Gcc/Acc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31381363	31381363	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138596278		P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	319	409	0	ENST00000328111.2:c.1088G>A	p.Arg363His	p.R363H	ENST00000328111	NM_006892.3	363	cGt/cAt					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41564512	41564512	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	404	517	1	ENST00000263253.7:c.3934C>T	p.Arg1312Ter	p.R1312*	ENST00000263253	NM_001429.3	1312	Cga/Tga					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123182928	123182928	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	556	360	1	ENST00000218089.9:c.893G>A	p.Arg298His	p.R298H	ENST00000218089	NM_001042749.1	298	cGt/cAt					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47705459	47705459	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	433	621	0	ENST00000233146.2:c.2260del	p.Thr754LeufsTer9	p.T754Lfs*9	ENST00000233146	NM_000251.2	753	ggA/gg					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71027087	71027087	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	259	378	0	ENST00000318789.4:c.1240delC	p.Leu414Ter	p.L414*	ENST00000318789	NM_032682.5	414	Ctg/tg					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78681752	78681752	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	295	558	0	ENST00000306801.3:c.463del	p.Val155CysfsTer47	p.V155Cfs*47	ENST00000306801	NM_020761.2	154	Ggg/gg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49427010	49427013	+	frameshift_variant	Frame_Shift_Del	DEL	CTGT	CTGT	-			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	199	382	0	ENST00000301067.7:c.11475_11478del	p.Gln3826CysfsTer3	p.Q3826Cfs*3	ENST00000301067	NM_003482.3	3825	agACAG/ag					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45651311	45651315	+	missense_variant	Missense_Mutation	ONP	CTCTC	CTCTC	TTTTT			P-0008345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	335	773	0	ENST00000407780.3:c.710_714delinsAAAAA	p.Gly237_Glu238delinsGluLys	p.G237_E238delinsEK	ENST00000407780	NM_001283052.1	237	gGAGAG/gAAAAA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	182	443	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224						NEWRECORD																																																																									
CDKN2C	0	MSKCC	GRCh37	1	51436117	51436117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	53	273	0	ENST00000262662.1:c.77A>G	p.Gln26Arg	p.Q26R	ENST00000262662		26	cAa/cGa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098390	11098414	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCCCCGCAGCCAACGGGCCGCCC	TTCCCCCGCAGCCAACGGGCCGCCC	-			P-0006321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	79	417	0	ENST00000344626.4:c.917_941del	p.Gln306ArgfsTer12	p.Q306Rfs*12	ENST00000344626	NM_003072.3	303	aTTCCCCCGCAGCCAACGGGCCGCCCt/at					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	177	131	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	936	372	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561263	9561263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	546	374	0	ENST00000353224.5:c.519G>A	p.Met173Ile	p.M173I	ENST00000353224	NM_177990.2	173	atG/atA					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71247436	71247436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	362	376	1	ENST00000318789.4:c.97C>T	p.Arg33Trp	p.R33W	ENST00000318789	NM_032682.5	33	Cgg/Tgg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944629	40944629	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	135	177	0	ENST00000373198.4:c.1873C>T	p.Gln625Ter	p.Q625*	ENST00000373198	NM_133170.3	625	Cag/Tag					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344107	118344107	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	454	289	1	ENST00000534358.1:c.2233C>T	p.Arg745Ter	p.R745*	ENST00000534358	NM_005933.3	745	Cga/Tga					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71021727	71021727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	822	603	0	ENST00000318789.4:c.1631G>A	p.Arg544Gln	p.R544Q	ENST00000318789	NM_032682.5	544	cGa/cAa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88670452	88670452	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143617169		P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	399	478	0	ENST00000360948.2:c.1234G>A	p.Glu412Lys	p.E412K	ENST00000360948	NM_001012338.2	412	Gaa/Aaa					NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47084111	47084111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	223	460	1	ENST00000409792.3:c.7178C>T	p.Pro2393Leu	p.P2393L	ENST00000409792	NM_014159.6	2393	cCc/cTc					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156851420	156851420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	269	273	0	ENST00000524377.1:c.2377G>A	p.Asp793Asn	p.D793N	ENST00000524377	NM_002529.3	793	Gat/Aat					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48026923	48026923	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	416	585	0	ENST00000234420.5:c.1801C>G	p.Leu601Val	p.L601V	ENST00000234420	NM_000179.2	601	Ctc/Gtc					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178095626	178095626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	724	666	2	ENST00000397062.3:c.1705C>T	p.Arg569Cys	p.R569C	ENST00000397062	NM_006164.4	569	Cgt/Tgt					NEWRECORD																																																																									
MST1	0	MSKCC	GRCh37	3	49723368	49723368	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	553	312	0	ENST00000449682.2:c.1175A>T	p.Tyr392Phe	p.Y392F	ENST00000449682	NM_020998.3	392	tAc/tTc					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49933692	49933692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	380	762	0	ENST00000296474.3:c.2585C>T	p.Pro862Leu	p.P862L	ENST00000296474	NM_002447.2	862	cCa/cTa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441265	52441265	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	214	361	1	ENST00000460680.1:c.505C>T	p.His169Tyr	p.H169Y	ENST00000460680	NM_004656.3	169	Cac/Tac					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112179365	112179365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	280	535	0	ENST00000257430.4:c.8074C>T	p.Pro2692Ser	p.P2692S	ENST00000257430	NM_000038.5	2692	Cca/Tca					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94068055	94068055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	1296	764	1	ENST00000369303.4:c.907G>A	p.Asp303Asn	p.D303N	ENST00000369303	NM_004440.3	303	Gat/Aat					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2976787	2976787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1550	591	570	1	ENST00000396946.4:c.1225G>A	p.Glu409Lys	p.E409K	ENST00000396946	NM_032415.4	409	Gag/Aag					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13935611	13935611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	908	330	0	ENST00000405192.2:c.1245G>A	p.Met415Ile	p.M415I	ENST00000405192	NM_001163147.1	415	atG/atA					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152027753	152027753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	1634	655	0	ENST00000262189.6:c.322C>T	p.Leu108Phe	p.L108F	ENST00000262189	NM_170606.2	108	Ctt/Ttt					NEWRECORD																																																																									
XRCC2	0	MSKCC	GRCh37	7	152346397	152346397	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2127	778	897	0	ENST00000359321.1:c.173T>C	p.Leu58Pro	p.L58P	ENST00000359321	NM_005431.1	58	cTt/cCt					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738233	145738233	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	456	321	0	ENST00000428558.2:c.2752G>A	p.Glu918Lys	p.E918K	ENST00000428558	NM_004260.3	918	Gag/Aag					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8733830	8733830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	107	259	1	ENST00000356435.5:c.14C>T	p.Ala5Val	p.A5V	ENST00000356435		5	gCc/gTc					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93606226	93606226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	371	402	0	ENST00000375746.1:c.46T>A	p.Phe16Ile	p.F16I	ENST00000375746	NM_001174167.1	16	Ttt/Att					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70451338	70451338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	759	607	0	ENST00000373644.4:c.6178G>A	p.Gly2060Ser	p.G2060S	ENST00000373644	NM_030625.2	2060	Ggt/Agt					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119149275	119149275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	887	564	1	ENST00000264033.4:c.1283C>A	p.Pro428His	p.P428H	ENST00000264033	NM_005188.3	428	cCc/cAc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49443670	49443670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	250	430	0	ENST00000301067.7:c.3701G>A	p.Gly1234Glu	p.G1234E	ENST00000301067	NM_003482.3	1234	gGg/gAg					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865591	57865591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	820	787	0	ENST00000228682.2:c.3068C>T	p.Pro1023Leu	p.P1023L	ENST00000228682	NM_005269.2	1023	cCt/cTt					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28602426	28602426	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	478	345	0	ENST00000241453.7:c.1943-1G>A		p.X648_splice	ENST00000241453	NM_004119.2	648						NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041426	42041426	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	829	842	0	ENST00000219905.7:c.5621C>T	p.Ser1874Phe	p.S1874F	ENST00000219905	NM_001164273.1	1874	tCt/tTt					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2129652	2129652	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	730	512	0	ENST00000219476.3:c.3379C>T	p.Arg1127Trp	p.R1127W	ENST00000219476	NM_000548.3	1127	Cgg/Tgg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9943662	9943662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	226	367	0	ENST00000330684.3:c.1279G>A	p.Glu427Lys	p.E427K	ENST00000330684	NM_001134407.1	427	Gag/Aag					NEWRECORD																																																																									
SOCS1	0	MSKCC	GRCh37	16	11348936	11348936	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	137	195	0	ENST00000332029.2:c.400C>G	p.Arg134Gly	p.R134G	ENST00000332029	NM_003745.1	134	Cgc/Ggc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68867272	68867272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	613	332	0	ENST00000261769.5:c.2519C>T	p.Ser840Phe	p.S840F	ENST00000261769	NM_004360.3	840	tCc/tTc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29497015	29497015	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	121	275	0	ENST00000358273.4:c.586G>A	p.Glu196Lys	p.E196K	ENST00000358273	NM_001042492.2	196	Gaa/Aaa					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10286241	10286241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	638	616	1	ENST00000340748.4:c.575C>T	p.Ser192Phe	p.S192F	ENST00000340748		192	tCc/tTc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15296117	15296117	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	208	486	0	ENST00000263388.2:c.2247C>A	p.Cys749Ter	p.C749*	ENST00000263388	NM_000435.2	749	tgC/tgA					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31025064	31025064	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	464	274	0	ENST00000375687.4:c.4549C>T	p.Gln1517Ter	p.Q1517*	ENST00000375687	NM_015338.5	1517	Caa/Taa					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31368176	31368176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	802	526	1	ENST00000328111.2:c.47G>A	p.Gly16Glu	p.G16E	ENST00000328111	NM_006892.3	16	gGg/gAg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29527460	29527461	+	stop_gained	Nonsense_Mutation	DNP	AC	AC	TT			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	343	334	0	ENST00000358273.4:c.909_910delinsTT	p.Arg304Ter	p.R304*	ENST00000358273	NM_001042492.2	303	ctACga/ctTTga					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65339144	65339145	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	388	437	0	ENST00000342505.4:c.391_392delinsTT	p.Pro131Leu	p.P131L	ENST00000342505	NM_002227.2	131	CCa/TTa					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70332415	70332415	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	26	335	0	ENST00000373644.4:c.320G>A	p.Arg107Gln	p.R107Q	ENST00000373644	NM_030625.2	107	cGa/cAa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	249	299	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0004845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	142	369	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0004845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	259	396	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0004845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	322	459	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89480376	89480376	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	132	421	0	ENST00000336596.2:c.2213C>A	p.Ser738Ter	p.S738*	ENST00000336596	NM_005233.5	738	tCa/tAa					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589596	67589617	+	protein_altering_variant	In_Frame_Del	DEL	CACTCAGTTTCAAGAAAAAAGT	CACTCAGTTTCAAGAAAAAAGT	A			P-0004845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	217	374	0	ENST00000274335.5:c.1359_1380delinsA	p.Asn453_Ser460delinsLys	p.N453_S460delinsK	ENST00000274335		453	aaCACTCAGTTTCAAGAAAAAAGT/aaA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	13	431	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	27	269	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	42	291	3	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	42	291	3	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15964926	15964984	+	frameshift_variant	Frame_Shift_Del	DEL	GCCACTTGGAAAGGCTGAAGAAGTGTATAAACACTGAACAGATCTCTTCTCCACCTCCA	GCCACTTGGAAAGGCTGAAGAAGTGTATAAACACTGAACAGATCTCTTCTCCACCTCCA	-			P-0005185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	20	572	0	ENST00000268712.3:c.5612_5670del	p.Leu1871GlnfsTer12	p.L1871Qfs*12	ENST00000268712	NM_006311.3	1871	cTGGAGGTGGAGAAGAGATCTGTTCAGTGTTTATACACTTCTTCAGCCTTTCCAAGTGGC/c					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11984697	11984718	+	frameshift_variant	Frame_Shift_Del	DEL	TGAGTCATCAGGAAAACTGAAG	TGAGTCATCAGGAAAACTGAAG	-			P-0005185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			35	10	224	0	ENST00000353533.5:c.243_264del	p.Glu82SerfsTer14	p.E82Sfs*14	ENST00000353533	NM_003010.3	81	atTGAGTCATCAGGAAAACTGAAG/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	346	549	1	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039419	49039419	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	331	609	0	ENST00000267163.4:c.2406del	p.Asn803ThrfsTer7	p.N803Tfs*7	ENST00000267163	NM_000321.2	802	Ggg/gg					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25965641	25965641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	423	514	0	ENST00000435504.4:c.3565G>A	p.Glu1189Lys	p.E1189K	ENST00000435504		1189	Gag/Aag					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99136609	99136609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	264	333	0	ENST00000074304.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000074304	NM_001134224.1	33	tCt/tGt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89499366	89499366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	287	407	0	ENST00000336596.2:c.2536C>A	p.Pro846Thr	p.P846T	ENST00000336596	NM_005233.5	846	Ccc/Acc					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189608586	189608586	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	1002	513	0	ENST00000264731.3:c.1661C>A	p.Ala554Glu	p.A554E	ENST00000264731	NM_003722.4	554	gCg/gAg					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55127411	55127411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	302	542	0	ENST00000257290.5:c.199T>A	p.Ser67Thr	p.S67T	ENST00000257290	NM_006206.4	67	Tcc/Acc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66242768	66242768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	393	513	2	ENST00000273854.3:c.1804G>T	p.Gly602Cys	p.G602C	ENST00000273854	NM_004439.5	602	Ggc/Tgc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467504	66467504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	121	488	0	ENST00000273854.3:c.765G>T	p.Leu255Phe	p.L255F	ENST00000273854	NM_004439.5	255	ttG/ttT					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1264703	1264703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	480	440	1	ENST00000310581.5:c.2659C>A	p.Leu887Met	p.L887M	ENST00000310581	NM_198253.2	887	Ctg/Atg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175642	112175642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	75	614	0	ENST00000257430.4:c.4351G>C	p.Glu1451Gln	p.E1451Q	ENST00000257430	NM_000038.5	1451	Gaa/Caa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117725534	117725534	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	323	453	0	ENST00000368508.3:c.347C>G	p.Thr116Arg	p.T116R	ENST00000368508	NM_002944.2	116	aCa/aGa					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13946210	13946210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	299	307	0	ENST00000405192.2:c.886G>A	p.Glu296Lys	p.E296K	ENST00000405192	NM_001163147.1	296	Gag/Aag					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81340833	81340833	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	458	465	0	ENST00000222390.5:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000222390	NM_000601.4	470	Gaa/Aaa					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509367	106509367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	522	527	1	ENST00000359195.3:c.1361C>A	p.Ser454Tyr	p.S454Y	ENST00000359195	NM_002649.2	454	tCc/tAc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481408	140481408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	417	446	1	ENST00000288602.6:c.1400C>T	p.Ser467Leu	p.S467L	ENST00000288602	NM_004333.4	467	tCa/tTa					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87563512	87563512	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	151	312	0	ENST00000277120.3:c.1900G>C	p.Glu634Gln	p.E634Q	ENST00000277120		634	Gag/Cag					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101909971	101909971	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	216	436	0	ENST00000374994.4:c.1291C>G	p.Leu431Val	p.L431V	ENST00000374994	NM_004612.2	431	Ctt/Gtt					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43596140	43596140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	330	441	1	ENST00000355710.3:c.307C>A	p.His103Asn	p.H103N	ENST00000355710	NM_020975.4	103	Cat/Aat					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43596158	43596158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	300	394	0	ENST00000355710.3:c.325C>A	p.Leu109Ile	p.L109I	ENST00000355710	NM_020975.4	109	Ctc/Atc					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851998	63851998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	204	252	0	ENST00000279873.7:c.2776C>T	p.His926Tyr	p.H926Y	ENST00000279873	NM_032199.2	926	Cat/Tat					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999494	100999494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	375	635	0	ENST00000325455.5:c.308C>A	p.Pro103His	p.P103H	ENST00000325455	NM_001202474.3	103	cCc/cAc					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18793382	18793382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	281	557	0	ENST00000266497.5:c.4079C>A	p.Ala1360Glu	p.A1360E	ENST00000266497		1360	gCg/gAg					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58734074	58734074	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	471	720	0	ENST00000305921.3:c.1132G>C	p.Glu378Gln	p.E378Q	ENST00000305921	NM_003620.3	378	Gaa/Caa					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118997	3118997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	301	517	1	ENST00000078429.4:c.681G>T	p.Met227Ile	p.M227I	ENST00000078429	NM_002067.2	227	atG/atT					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610322	10610322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	281	507	2	ENST00000171111.5:c.388C>A	p.Pro130Thr	p.P130T	ENST00000171111	NM_203500.1	130	Ccc/Acc					NEWRECORD																																																																									
MEF2B	0	MSKCC	GRCh37	19	19258627	19258627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	303	501	0	ENST00000162023.5:c.273G>T	p.Arg91Ser	p.R91S	ENST00000162023		91	agG/agT					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44935994	44935994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	49	758	0	ENST00000377967.4:c.2755C>T	p.Pro919Ser	p.P919S	ENST00000377967	NM_021140.2	919	Cca/Tca					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44936013	44936013	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	51	791	0	ENST00000377967.4:c.2774C>T	p.Ser925Phe	p.S925F	ENST00000377967	NM_021140.2	925	tCt/tTt					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44936051	44936051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	48	741	0	ENST00000377967.4:c.2812C>A	p.Pro938Thr	p.P938T	ENST00000377967	NM_021140.2	938	Cca/Aca					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412461	63412461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	388	741	1	ENST00000330258.3:c.706G>A	p.Gly236Arg	p.G236R	ENST00000330258	NM_152424.3	236	Ggg/Agg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765239	66765239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	153	339	0	ENST00000374690.3:c.251C>A	p.Pro84His	p.P84H	ENST00000374690	NM_000044.3	84	cCc/cAc					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258744	115258745	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0009833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	380	388	0	ENST00000369535.4:c.37_38delinsTT	p.Gly13Phe	p.G13F	ENST00000369535	NM_002524.4	13	GGt/TTt					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52438576	52438584	+	frameshift_variant	Frame_Shift_Del	DEL	CACACCTGC	CACACCTGC	T			P-0006109-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	76	413	0	ENST00000460680.1:c.1135_1143delinsA	p.Ala379ArgfsTer16	p.A379Rfs*16	ENST00000460680	NM_004656.3	379	GCAGGTGTG/A					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119149246	119149246	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	250	494	0	ENST00000264033.4:c.1254C>A	p.Phe418Leu	p.F418L	ENST00000264033	NM_005188.3	418	ttC/ttA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0006156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	234	666	2	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	412	559	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg					NEWRECORD																																																																									
BBC3	0	MSKCC	GRCh37	19	47735771	47735771	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0006156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	173	492	0	ENST00000449228.1:c.88+1G>C		p.X30_splice	ENST00000449228	NM_001127240.2	30						NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123215308	123215308	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	295	587	0	ENST00000218089.9:c.2854G>C	p.Ala952Pro	p.A952P	ENST00000218089	NM_001042749.1	952	Gct/Cct					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186502466	186502468	+	inframe_deletion	In_Frame_Del	DEL	TAT	TAT	-			P-0006156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	229	526	0	ENST00000323963.5:c.193_195del	p.Ile65del	p.I65del	ENST00000323963		63	gcTATt/gct					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86645169	86645169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191759701		P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	66	387	2	ENST00000274376.6:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000274376	NM_002890.2	414	cGg/cAg					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38996925	38996925	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	73	457	0	ENST00000357387.3:c.452G>C	p.Arg151Thr	p.R151T	ENST00000357387	NM_152756.3	151	aGa/aCa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112163689	112163689	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	104	736	1	ENST00000257430.4:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000257430	NM_000038.5	538	Gaa/Taa					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106520098	106520098	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	69	336	0	ENST00000359195.3:c.2526G>C	p.Met842Ile	p.M842I	ENST00000359195	NM_002649.2	842	atG/atC					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412045	116412045	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	254	354	0	ENST00000397752.3:c.3028+2T>A		p.X1010_splice	ENST00000397752	NM_000245.2	1010						NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70426872	70426872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	96	615	0	ENST00000373644.4:c.4532C>A	p.Pro1511Gln	p.P1511Q	ENST00000373644	NM_030625.2	1511	cCa/cAa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15995257	15995257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	111	651	0	ENST00000268712.3:c.2936G>C	p.Arg979Thr	p.R979T	ENST00000268712	NM_006311.3	979	aGa/aCa					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15350782	15350782	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	77	674	0	ENST00000263377.2:c.3221C>A	p.Ser1074Ter	p.S1074*	ENST00000263377	NM_058243.2	1074	tCa/tAa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937810	76937810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	126	919	0	ENST00000373344.5:c.2938G>A	p.Asp980Asn	p.D980N	ENST00000373344	NM_000489.3	980	Gat/Aat					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938062	76938062	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	101	723	0	ENST00000373344.5:c.2686G>C	p.Asp896His	p.D896H	ENST00000373344	NM_000489.3	896	Gat/Cat					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938074	76938074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	98	692	0	ENST00000373344.5:c.2674G>A	p.Glu892Lys	p.E892K	ENST00000373344	NM_000489.3	892	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	90	384	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028689	12028689	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0005816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	52	654	0	ENST00000353533.5:c.891+1G>T		p.X297_splice	ENST00000353533	NM_003010.3	297						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	132	376	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039339	49039339	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0009093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	252	599	0	ENST00000267163.4:c.2326-2A>G		p.X776_splice	ENST00000267163	NM_000321.2	776						NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41385183	41385183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	136	435	0	ENST00000373198.4:c.778C>T	p.Arg260Trp	p.R260W	ENST00000373198	NM_133170.3	260	Cgg/Tgg					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15364968	15364968	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	112	426	0	ENST00000263377.2:c.2153A>G	p.Glu718Gly	p.E718G	ENST00000263377	NM_058243.2	718	gAa/gGa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	120	383	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0008644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	135	240	0	ENST00000269305.4:c.559+1G>C		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938673	76938673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	153	610	1	ENST00000373344.5:c.2075C>T	p.Ser692Leu	p.S692L	ENST00000373344	NM_000489.3	692	tCa/tTa					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17742899	17742914	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGCTGGCGGACGTG	CCTGCTGGCGGACGTG	-			P-0008644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	135	308	0	ENST00000250003.3:c.810_825del	p.Ala272SerfsTer59	p.A272Sfs*59	ENST00000250003	NM_002478.4	269	ctCCTGCTGGCGGACGTG/ct					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	475	303	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115820	8115833	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCGTTTAACCCG	GCTCGTTTAACCCG	-			P-0009155-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1398	546	587	0	ENST00000346208.3:c.1168_1181del	p.Ser390ArgfsTer112	p.S390Rfs*112	ENST00000346208		389	aGCTCGTTTAACCCG/a					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	45	373	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0009335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	32	388	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	95	391	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55953808	55953808	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004996-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1182	148	639	5	ENST00000263923.4:c.3628C>A	p.Pro1210Thr	p.P1210T	ENST00000263923	NM_002253.2	1210	Ccc/Acc					NEWRECORD																																																																									
BCL2	0	MSKCC	GRCh37	18	60985747	60985749	+	inframe_deletion	In_Frame_Del	DEL	GGA	GGA	-			P-0004996-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			492	77	229	0	ENST00000333681.4:c.151_153del	p.Ser51del	p.S51del	ENST00000333681		51	TCC/-					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38487577	38487577	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004996-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			2012	126	633	0	ENST00000254066.5:c.110del	p.Pro37ArgfsTer5	p.P37Rfs*5	ENST00000254066	NM_000964.3	36	tCc/tc					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56492691	56492691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	240	429	0	ENST00000407977.2:c.248T>C	p.Met83Thr	p.M83T	ENST00000407977		83	aTg/aCg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0009055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	240	436	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	130	416	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134920331	134920331	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	244	457	0	ENST00000398015.3:c.2146T>G	p.Phe716Val	p.F716V	ENST00000398015	NM_004441.4	716	Ttc/Gtc					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876392	35876392	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	72	257	0	ENST00000303115.3:c.1184A>G	p.Lys395Arg	p.K395R	ENST00000303115	NM_002185.3	395	aAg/aGg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72827201	72827201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	279	658	1	ENST00000268489.5:c.9380C>T	p.Pro3127Leu	p.P3127L	ENST00000268489	NM_006885.3	3127	cCg/cTg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099371	27099374	+	frameshift_variant	Frame_Shift_Del	DEL	ATTC	ATTC	-			P-0009055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	259	397	0	ENST00000324856.7:c.3608_3611delATTC	p.Asn1203ThrfsTer2	p.N1203Tfs*2	ENST00000324856	NM_006015.4	1203	aATTCc/ac					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591841	48591851	+	frameshift_variant	Frame_Shift_Del	DEL	TAGGAGAGACA	TAGGAGAGACA	-			P-0009055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	164	484	0	ENST00000342988.3:c.1005_1015delAGGAGAGACAT	p.Gly336Ter	p.G336*	ENST00000342988	NM_005359.5	335	gTAGGAGAGACA/g					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643389	52643397	+	inframe_deletion	In_Frame_Del	DEL	CGACGGTAG	CGACGGTAG	-			P-0009055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	396	501	0	ENST00000394830.3:c.2499_2507delCTACCGTCG	p.Tyr834_Arg836del	p.Y834_R836del	ENST00000394830	NM_018313.4	833	cgCTACCGTCGg/cgg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	213403185	213403185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	44	287	0	ENST00000342788.4:c.70G>A	p.Asp24Asn	p.D24N	ENST00000342788	NM_005235.2	24	Gat/Aat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	69	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	193	455	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45856015	45856015	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144511865		P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	123	337	0	ENST00000391945.4:c.1891C>T	p.Arg631Cys	p.R631C	ENST00000391945	NM_000400.3	631	Cgc/Tgc					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39795407	39795407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	86	417	1	ENST00000288319.7:c.313G>A	p.Gly105Ser	p.G105S	ENST00000288319	NM_182918.3	105	Ggc/Agc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118363770	118363775	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGGCTG	AGGCTG	-			P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	56	247	0	ENST00000534358.1:c.5005-2_5008del		p.X1669_splice	ENST00000534358	NM_005933.3	1669						NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29912329	29912345	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCCTTGGAGCTGTGA	TCTCCTTGGAGCTGTGA	-			P-0004801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	113	393	0	ENST00000376809.5:c.950_966del	p.Leu317HisfsTer17	p.L317Hfs*17	ENST00000376809	NM_002116.7	316	gtTCTCCTTGGAGCTGTGAtc/gttc					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6426860	6426860	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	170	448	0	ENST00000356142.4:c.53G>C	p.Cys18Ser	p.C18S	ENST00000356142	NM_018890.3	18	tGc/tCc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060844	38060844	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	171	562	1	ENST00000250448.2:c.1145A>T	p.His382Leu	p.H382L	ENST00000250448	NM_004496.3	382	cAc/cTc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006038-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	155	512	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006038-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	120	315	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56436026	56436026	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006038-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	76	307	1	ENST00000407977.2:c.1111C>T	p.Arg371Ter	p.R371*	ENST00000407977		371	Cga/Tga					NEWRECORD																																																																									
HIST2H3D	0	MSKCC	GRCh37	1	149784860	149784860	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006038-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	53	269	0	ENST00000331491.1:c.377A>G	p.Gln126Arg	p.Q126R	ENST00000331491	NM_001123375.2	126	cAg/cGg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162743298	162743298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006038-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	45	426	2	ENST00000367921.3:c.1768G>A	p.Asp590Asn	p.D590N	ENST00000367921	NM_006182.2	590	Gac/Aac					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151949796	151949796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006038-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	62	281	2	ENST00000262189.6:c.1304G>A	p.Cys435Tyr	p.C435Y	ENST00000262189	NM_170606.2	435	tGc/tAc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29008057	29008057	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139202898		P-0006038-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	71	420	2	ENST00000282397.4:c.712C>T	p.Arg238Cys	p.R238C	ENST00000282397	NM_002019.4	238	Cgc/Tgc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110438262	110438262	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006038-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	25	100	0	ENST00000375856.3:c.139T>G	p.Phe47Val	p.F47V	ENST00000375856	NM_003749.2	47	Ttc/Gtc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604650	48604650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006038-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	78	264	0	ENST00000342988.3:c.1472G>T	p.Gly491Val	p.G491V	ENST00000342988	NM_005359.5	491	gGt/gTt					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44942751	44942751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006038-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	66	270	0	ENST00000377967.4:c.3331C>T	p.Arg1111Cys	p.R1111C	ENST00000377967	NM_021140.2	1111	Cgt/Tgt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165360	47165360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	136	525	1	ENST00000409792.3:c.766C>T	p.Gln256Ter	p.Q256*	ENST00000409792	NM_014159.6	256	Cag/Tag					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	84	536	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138201237	138201237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	183	287	0	ENST00000237289.4:c.1936C>T	p.Pro646Ser	p.P646S	ENST00000237289	NM_001270507.1	646	Ccc/Tcc					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87325575	87325575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	56	412	0	ENST00000277120.3:c.452C>T	p.Thr151Ile	p.T151I	ENST00000277120		151	aCa/aTa					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70332117	70332117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	80	412	0	ENST00000373644.4:c.22A>G	p.Arg8Gly	p.R8G	ENST00000373644	NM_030625.2	8	Agg/Ggg					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112888191	112888191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	53	478	0	ENST00000351677.2:c.207G>C	p.Glu69Asp	p.E69D	ENST00000351677	NM_002834.3	69	gaG/gaC					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29002020	29002020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	42	316	0	ENST00000282397.4:c.1145G>A	p.Arg382His	p.R382H	ENST00000282397	NM_002019.4	382	cGc/cAc					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36987027	36987027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	43	220	0	ENST00000354822.5:c.662G>A	p.Arg221His	p.R221H	ENST00000354822	NM_001079668.2	221	cGc/cAc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556049	29556049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	29	265	0	ENST00000358273.4:c.2416G>A	p.Glu806Lys	p.E806K	ENST00000358273	NM_001042492.2	806	Gaa/Aaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	161	269	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	127	416	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551932	150551932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	79	282	0	ENST00000369026.2:c.75C>A	p.Ser25Arg	p.S25R	ENST00000369026	NM_021960.4	25	agC/agA					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156845947	156845947	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	217	412	0	ENST00000524377.1:c.1577T>A	p.Leu526His	p.L526H	ENST00000524377	NM_002529.3	526	cTt/cAt					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243736341	243736341	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	59	286	0	ENST00000263826.5:c.706C>A	p.His236Asn	p.H236N	ENST00000263826	NM_005465.4	236	Cat/Aat					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30715668	30715668	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	41	352	0	ENST00000359013.4:c.1401C>G	p.Phe467Leu	p.F467L	ENST00000359013	NM_001024847.2	467	ttC/ttG					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	82	223	0	ENST00000263967.3:c.1034A>C	p.Asn345Thr	p.N345T	ENST00000263967	NM_006218.2	345	aAt/aCt					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900325	101900325	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	28	318	0	ENST00000374994.4:c.759G>T	p.Met253Ile	p.M253I	ENST00000374994	NM_004612.2	253	atG/atT					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100514	8100514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	112	404	0	ENST00000346208.3:c.488C>A	p.Pro163Gln	p.P163Q	ENST00000346208		163	cCg/cAg					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64573830	64573830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	39	256	2	ENST00000337652.1:c.938C>T	p.Ser313Leu	p.S313L	ENST00000337652	NM_130803.2	313	tCa/tTa					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7216398	7216398	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	116	449	1	ENST00000380728.2:c.850G>T	p.Gly284Ter	p.G284*	ENST00000380728		284	Gga/Tga					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10244345	10244345	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	112	441	0	ENST00000340748.4:c.4849T>C	p.Ter1617GlnextTer23	p.*1617Qext*23	ENST00000340748		1617	Tag/Cag					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561429	9561429	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	80	323	1	ENST00000353224.5:c.353G>T	p.Gly118Val	p.G118V	ENST00000353224	NM_177990.2	118	gGc/gTc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41545961	41545961	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	54	487	0	ENST00000263253.7:c.2576T>G	p.Ile859Ser	p.I859S	ENST00000263253	NM_001429.3	859	aTt/aGt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	127	604	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720721	89720721	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	13	91	0	ENST00000371953.3:c.875del	p.Asn292MetfsTer15	p.N292Mfs*15	ENST00000371953	NM_000314.4	291	gAa/ga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	31	420	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	102	562	2	ENST00000269305.4:c.451C>A	p.Pro151Thr	p.P151T	ENST00000269305	NM_001126112.2	151	Ccc/Acc					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98211416	98211416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	43	508	1	ENST00000331920.6:c.3739G>A	p.Ala1247Thr	p.A1247T	ENST00000331920	NM_000264.3	1247	Gcg/Acg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	194	371	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17742463	17742463	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	167	528	0	ENST00000250003.3:c.650delC	p.Pro217ArgfsTer33	p.P217Rfs*33	ENST00000250003	NM_002478.4	215	ggC/gg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46233110	46233110	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0007420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	191	255	0	ENST00000334344.6:c.1331-2A>G		p.X444_splice	ENST00000334344	NM_152641.2	444						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29677328	29677331	+	frameshift_variant	Frame_Shift_Del	DEL	TTCC	TTCC	GAA			P-0007420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	303	392	1	ENST00000358273.4:c.7449_7452delinsGAA	p.Ser2484AsnfsTer5	p.S2484Nfs*5	ENST00000358273	NM_001042492.2	2483	ccTTCC/ccGAA					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52438545	52438545	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	171	384	0	ENST00000460680.1:c.1174C>T	p.Gln392Ter	p.Q392*	ENST00000460680	NM_004656.3	392	Cag/Tag					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651459	52651459	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	209	763	0	ENST00000394830.3:c.1637T>G	p.Phe546Cys	p.F546C	ENST00000394830	NM_018313.4	546	tTt/tGt					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30054197	30054197	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007498-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	109	481	0	ENST00000338641.4:c.619delT	p.Tyr207IlefsTer2	p.Y207Ifs*2	ENST00000338641	NM_000268.3	207	Tat/at					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0006302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	15	231	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21970913	21970913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	452	602	0	ENST00000304494.5:c.445G>T	p.Glu149Ter	p.E149*	ENST00000304494	NM_000077.4	149	Gaa/Taa					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970913	21970913	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	452	602	0	ENST00000304494.5:c.445G>T	p.Glu149Ter	p.E149*	ENST00000304494	NM_000077.4	149	Gaa/Taa					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63533763	63533763	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	452	544	0	ENST00000307078.5:c.1391C>T	p.Ser464Phe	p.S464F	ENST00000307078	NM_004655.3	464	tCc/tTc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380283	25380283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	654	626	1	ENST00000256078.4:c.175G>A	p.Ala59Thr	p.A59T	ENST00000256078	NM_033360.2	59	Gca/Aca					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63413131	63413131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	381	291	0	ENST00000330258.3:c.36G>T	p.Lys12Asn	p.K12N	ENST00000330258	NM_152424.3	12	aaG/aaT					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100977	27100977	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	612	594	0	ENST00000324856.7:c.4259A>T	p.Gln1420Leu	p.Q1420L	ENST00000324856	NM_006015.4	1420	cAg/cTg					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65301779	65301779	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	315	505	0	ENST00000342505.4:c.3258+2T>A		p.X1086_splice	ENST00000342505	NM_002227.2	1086						NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115256593	115256593	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	285	472	0	ENST00000369535.4:c.118T>G	p.Tyr40Asp	p.Y40D	ENST00000369535	NM_002524.4	40	Tac/Gac					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162748442	162748442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	206	636	0	ENST00000367921.3:c.2356G>C	p.Glu786Gln	p.E786Q	ENST00000367921	NM_006182.2	786	Gaa/Caa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55136846	55136846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	563	849	0	ENST00000257290.5:c.1168G>T	p.Gly390Cys	p.G390C	ENST00000257290	NM_006206.4	390	Ggc/Tgc					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143043306	143043306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	449	733	1	ENST00000262992.4:c.2110G>A	p.Val704Met	p.V704M	ENST00000262992	NM_001101669.1	704	Gtg/Atg					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294033	1294033	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1777	596	805	4	ENST00000310581.5:c.968C>A	p.Pro323Gln	p.P323Q	ENST00000310581	NM_198253.2	323	cCg/cAg					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180052996	180052996	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	418	627	0	ENST00000261937.6:c.1294C>G	p.Pro432Ala	p.P432A	ENST00000261937	NM_182925.4	432	Ccc/Gcc					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87570395	87570395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	494	789	1	ENST00000277120.3:c.2135G>T	p.Gly712Val	p.G712V	ENST00000277120		712	gGg/gTg					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133750423	133750423	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	351	784	0	ENST00000318560.5:c.1254C>G	p.Ile418Met	p.I418M	ENST00000318560	NM_005157.4	418	atC/atG					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64132834	64132834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	535	797	2	ENST00000334205.4:c.968G>A	p.Arg323His	p.R323H	ENST00000334205	NM_003942.2	323	cGc/cAc					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94212919	94212919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	791	449	1	ENST00000323929.3:c.323G>T	p.Trp108Leu	p.W108L	ENST00000323929	NM_005591.3	108	tGg/tTg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46205250	46205250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	697	770	1	ENST00000334344.6:c.334G>A	p.Glu112Lys	p.E112K	ENST00000334344	NM_152641.2	112	Gag/Aag					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57864232	57864232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	512	891	1	ENST00000228682.2:c.1709C>T	p.Pro570Leu	p.P570L	ENST00000228682	NM_005269.2	570	cCa/cTa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133226318	133226318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	325	752	1	ENST00000320574.5:c.3740C>T	p.Pro1247Leu	p.P1247L	ENST00000320574	NM_006231.2	1247	cCg/cTg					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007791	45007791	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	380	570	0	ENST00000558401.1:c.238T>C	p.Trp80Arg	p.W80R	ENST00000558401	NM_004048.2	80	Tgg/Cgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577111	7577111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	613	755	2	ENST00000269305.4:c.827C>A	p.Ala276Asp	p.A276D	ENST00000269305	NM_001126112.2	276	gCc/gAc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29528438	29528438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	592	571	4	ENST00000358273.4:c.1195G>T	p.Ala399Ser	p.A399S	ENST00000358273	NM_001042492.2	399	Gct/Tct					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7122892	7122892	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	416	653	0	ENST00000302850.5:c.3367G>T	p.Glu1123Ter	p.E1123*	ENST00000302850	NM_000208.2	1123	Gag/Tag					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50912486	50912486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	429	873	6	ENST00000440232.2:c.2000G>T	p.Arg667Leu	p.R667L	ENST00000440232	NM_002691.3	667	cGg/cTg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40864900	40864900	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	583	671	0	ENST00000373198.4:c.2370-2A>G		p.X790_splice	ENST00000373198	NM_133170.3	790						NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40877412	40877412	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	326	520	0	ENST00000373198.4:c.2284A>G	p.Asn762Asp	p.N762D	ENST00000373198	NM_133170.3	762	Aac/Gac					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41513788	41513788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	147	565	0	ENST00000263253.7:c.692G>A	p.Gly231Glu	p.G231E	ENST00000263253	NM_001429.3	231	gGa/gAa					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56440756	56440756	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	429	486	0	ENST00000407977.2:c.462del	p.Leu155TrpfsTer3	p.L155Wfs*3	ENST00000407977		154	ccG/cc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	139	585	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97887405	97887405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	145	660	0	ENST00000289081.3:c.959A>G	p.Gln320Arg	p.Q320R	ENST00000289081	NM_000136.2	320	cAg/cGg					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	283	394	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25965689	25965689	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	347	489	0	ENST00000435504.4:c.3517A>C	p.Ser1173Arg	p.S1173R	ENST00000435504		1173	Agt/Cgt					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436379	52436392	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGACCCCTTGGC	GCTGACCCCTTGGC	-			P-0008018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	257	476	0	ENST00000460680.1:c.2102_2115del	p.Arg701HisfsTer11	p.R701Hfs*11	ENST00000460680	NM_004656.3	701	cGCCAAGGGGTCAGC/c					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27777961	27777961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2434	361	970	1	ENST00000369163.2:c.110A>T	p.Lys37Met	p.K37M	ENST00000369163	NM_003536.2	37	aAg/aTg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40714387	40714387	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	76	383	0	ENST00000373198.4:c.4010G>A	p.Arg1337His	p.R1337H	ENST00000373198	NM_133170.3	1337	cGc/cAc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15973491	15973494	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0009839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	106	351	0	ENST00000268712.3:c.4498_4501del	p.Asn1500GlufsTer21	p.N1500Efs*21	ENST00000268712	NM_006311.3	1500	AACAga/ga					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42000366	42000366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1379	81	527	0	ENST00000219905.7:c.2385G>A	p.Trp795Ter	p.W795*	ENST00000219905	NM_001164273.1	795	tgG/tgA					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	36	644	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc					NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22221726	22221726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	11	37	0	ENST00000215832.6:c.5C>T	p.Ala2Val	p.A2V	ENST00000215832	NM_002745.4	2	gCg/gTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0007507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	48	467	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577578	7577578	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	40	400	0	ENST00000269305.4:c.703A>G	p.Asn235Asp	p.N235D	ENST00000269305	NM_001126112.2	235	Aac/Gac					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	34	503	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61118817	61118817	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0005231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	28	498	0	ENST00000295025.8:c.11-1G>C		p.X4_splice	ENST00000295025	NM_002908.2	4						NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711874	89711874	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	67	420	0	ENST00000371953.3:c.493-1G>A		p.X165_splice	ENST00000371953	NM_000314.4	165						NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37883638	37883638	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200796676		P-0005231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	43	434	1	ENST00000269571.5:c.3250G>T	p.Asp1084Tyr	p.D1084Y	ENST00000269571		1084	Gat/Tat					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183753	10183761	+	inframe_deletion	In_Frame_Del	DEL	CATCTTCTG	CATCTTCTG	-			P-0005231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	82	377	0	ENST00000256474.2:c.224_232del	p.Ile75_Cys77del	p.I75_C77del	ENST00000256474	NM_000551.3	74	gtCATCTTCTGc/gtc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47058665	47058679	+	inframe_deletion	In_Frame_Del	DEL	TGTTTCACATTCTCA	TGTTTCACATTCTCA	-			P-0005231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	67	531	0	ENST00000409792.3:c.7599_7613del	p.Glu2534_His2538del	p.E2534_H2538del	ENST00000409792	NM_014159.6	2533	aaTGAGAATGTGAAACAc/aac					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	286	403	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152415582	152415582	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	72	536	0	ENST00000206249.3:c.1432G>C	p.Val478Leu	p.V478L	ENST00000206249	NM_000125.3	478	Gtc/Ctc					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59770860	59770860	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	214	347	0	ENST00000259008.2:c.2506A>T	p.Arg836Ter	p.R836*	ENST00000259008	NM_032043.2	836	Aga/Tga					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56177026	56177026	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	185	241	0	ENST00000399503.3:c.2297del	p.Leu766TrpfsTer33	p.L766Wfs*33	ENST00000399503	NM_005921.1	766	Ttg/tg					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	180	393	2	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	129	400	0	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	105	476	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	159	549	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11174416	11174416	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	125	603	0	ENST00000361445.4:c.7259C>T	p.Ala2420Val	p.A2420V	ENST00000361445	NM_004958.3	2420	gCc/gTc					NEWRECORD																																																																									
CTLA4	0	MSKCC	GRCh37	2	204736188	204736188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	36	494	0	ENST00000302823.3:c.545C>T	p.Thr182Ile	p.T182I	ENST00000302823	NM_005214.4	182	aCa/aTa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66535435	66535435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	39	129	1	ENST00000273854.3:c.26C>T	p.Ala9Val	p.A9V	ENST00000273854	NM_004439.5	9	gCg/gTg					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528897	157528897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	82	447	0	ENST00000346085.5:c.6622G>A	p.Val2208Met	p.V2208M	ENST00000346085	NM_020732.3	2208	Gtg/Atg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108196798	108196798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	26	365	0	ENST00000278616.4:c.6821C>T	p.Ala2274Val	p.A2274V	ENST00000278616	NM_000051.3	2274	gCa/gTa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5211778	5211778	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	89	467	0	ENST00000357368.4:c.5057G>A	p.Arg1686Gln	p.R1686Q	ENST00000357368	NM_002850.3	1686	cGg/cAg					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39933299	39933309	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTAACGGTC	TGGTAACGGTC	-			P-0004798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	207	364	0	ENST00000378444.4:c.1290_1300del	p.Thr431ArgfsTer5	p.T431Rfs*5	ENST00000378444	NM_001123385.1	430	caGACCGTTACCAaa/caaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	38	548	3	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	382	627	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17131262	17131262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1259	87	693	3	ENST00000285071.4:c.190G>A	p.Ala64Thr	p.A64T	ENST00000285071	NM_144997.5	64	Gca/Aca					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440870	52440887	+	inframe_deletion	In_Frame_Del	DEL	CCATGATGACCCGCCGGG	CCATGATGACCCGCCGGG	-			P-0009074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	288	512	0	ENST00000460680.1:c.617_634del	p.Ala206_Met211del	p.A206_M211del	ENST00000460680	NM_004656.3	206	gCCCGGCGGGTCATCATGGag/gag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	58	642	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	77	499	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0008582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	71	596	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41278106	41278106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	138	563	1	ENST00000349496.5:c.1982G>A	p.Arg661Gln	p.R661Q	ENST00000349496	NM_001904.3	661	cGa/cAa					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50918736	50918736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	82	563	0	ENST00000440232.2:c.2606C>T	p.Ser869Leu	p.S869L	ENST00000440232	NM_002691.3	869	tCg/tTg					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56487277	56487277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	84	353	1	ENST00000267101.3:c.1423C>T	p.Arg475Trp	p.R475W	ENST00000267101	NM_001982.3	475	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	128	484	0	ENST00000269305.4:c.761T>A	p.Ile254Asn	p.I254N	ENST00000269305	NM_001126112.2	254	aTc/aAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	175	557	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226590079	226590079	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	85	407	0	ENST00000366794.5:c.122C>T	p.Ser41Leu	p.S41L	ENST00000366794	NM_001618.3	41	tCg/tTg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68847399	68847399	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	227	521	0	ENST00000261769.5:c.1320+1G>T		p.X440_splice	ENST00000261769	NM_004360.3	440						NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40979319	40979319	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	79	359	1	ENST00000373198.4:c.1814C>T	p.Thr605Met	p.T605M	ENST00000373198	NM_133170.3	605	aCg/aTg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16024465	16024562	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGGCCCTTACGGCGGCCCTGACTGTTGGCAGTCTTTCGCCCCCGGGGTGTGGCTTGCTCTCTTTCCTCAGTTTCTTCTGCTGTACCATCTATCTTG	TCCGGCCCTTACGGCGGCCCTGACTGTTGGCAGTCTTTCGCCCCCGGGGTGTGGCTTGCTCTCTTTCCTCAGTTTCTTCTGCTGTACCATCTATCTTG	-			P-0007598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	27	461	0	ENST00000268712.3:c.1656_1753delCAAGATAGATGGTACAGCAGAAGAAACTGAGGAAAGAGAGCAAGCCACACCCCGGGGGCGAAAGACTGCCAACAGTCAGGGCCGCCGTAAGGGCCGGA	p.Lys553HisfsTer20	p.K553Hfs*20	ENST00000268712	NM_006311.3	552	gaCAAGATAGATGGTACAGCAGAAGAAACTGAGGAAAGAGAGCAAGCCACACCCCGGGGGCGAAAGACTGCCAACAGTCAGGGCCGCCGTAAGGGCCGGAtc/gatc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0007426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	39	347	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	135	265	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108141874	108141874	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	37	322	0	ENST00000278616.4:c.2921+1G>T		p.X974_splice	ENST00000278616	NM_000051.3	974						NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12037400	12037400	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	83	514	0	ENST00000396373.4:c.1031A>C	p.Tyr344Ser	p.Y344S	ENST00000396373	NM_001987.4	344	tAc/tCc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88669547	88669547	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56394626		P-0007426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	33	343	1	ENST00000360948.2:c.1351G>A	p.Val451Ile	p.V451I	ENST00000360948	NM_001012338.2	451	Gtc/Atc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	350	465	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2154748	2154748	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	250	589	0	ENST00000434045.2:c.473C>T	p.Pro158Leu	p.P158L	ENST00000434045	NM_001127598.1	158	cCg/cTg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057811	27057811	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	347	816	0	ENST00000324856.7:c.1519C>T	p.Gln507Ter	p.Q507*	ENST00000324856	NM_006015.4	507	Caa/Taa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27058093	27058093	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	42	70	0	ENST00000324856.7:c.1801C>T	p.Gln601Ter	p.Q601*	ENST00000324856	NM_006015.4	601	Cag/Tag					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242793439	242793439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	441	471	0	ENST00000334409.5:c.638C>A	p.Pro213His	p.P213H	ENST00000334409	NM_005018.2	213	cCc/cAc					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153271223	153271223	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	128	393	0	ENST00000281708.4:c.555G>C	p.Lys185Asn	p.K185N	ENST00000281708	NM_033632.3	185	aaG/aaC					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131931309	131931309	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	213	622	0	ENST00000265335.6:c.2014C>G	p.Gln672Glu	p.Q672E	ENST00000265335		672	Cag/Gag					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70406240	70406240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	205	642	1	ENST00000373644.4:c.3754G>T	p.Glu1252Ter	p.E1252*	ENST00000373644	NM_030625.2	1252	Gag/Tag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108180972	108180972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	130	381	0	ENST00000278616.4:c.5848G>A	p.Ala1950Thr	p.A1950T	ENST00000278616	NM_000051.3	1950	Gct/Act					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246147	46246147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	141	430	0	ENST00000334344.6:c.4241G>A	p.Arg1414Lys	p.R1414K	ENST00000334344	NM_152641.2	1414	aGa/aAa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115110034	115110034	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	379	496	1	ENST00000257566.3:c.1844C>G	p.Ser615Cys	p.S615C	ENST00000257566	NM_016569.3	615	tCc/tGc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911829	32911829	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	290	949	1	ENST00000380152.3:c.3337G>T	p.Glu1113Ter	p.E1113*	ENST00000380152		1113	Gaa/Taa					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42059279	42059279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1465	396	915	1	ENST00000219905.7:c.8999C>A	p.Ser3000Tyr	p.S3000Y	ENST00000219905	NM_001164273.1	3000	tCc/tAc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610376	10610376	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	537	627	0	ENST00000171111.5:c.334A>T	p.Thr112Ser	p.T112S	ENST00000171111	NM_203500.1	112	Acc/Tcc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610380	10610380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	549	631	0	ENST00000171111.5:c.330G>T	p.Met110Ile	p.M110I	ENST00000171111	NM_203500.1	110	atG/atT					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221299	1221300	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0006175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	503	600	0	ENST00000326873.7:c.823_824del	p.Pro275GlyfsTer9	p.P275Gfs*9	ENST00000326873	NM_000455.4	274	atCCcg/atcg					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023151	27023179	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	GCGGAGCCGGCAGCGGCGGCGGGCCCGGC	-			P-0004898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	88	72	0	ENST00000324856.7:c.267_295del	p.Ser90ProfsTer11	p.S90Pfs*11	ENST00000324856	NM_006015.4	86	gGCGGAGCCGGCAGCGGCGGCGGGCCCGGC/g					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49405954	49405954	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	380	710	1	ENST00000418115.1:c.184G>A	p.Gly62Arg	p.G62R	ENST00000418115	NM_001664.2	62	Ggg/Agg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108173733	108173733	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	91	428	0	ENST00000278616.4:c.5473C>T	p.Gln1825Ter	p.Q1825*	ENST00000278616	NM_000051.3	1825	Caa/Taa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061412	38061412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	140	478	0	ENST00000250448.2:c.577C>G	p.Leu193Val	p.L193V	ENST00000250448	NM_004496.3	193	Ctg/Gtg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68849541	68849541	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	174	742	1	ENST00000261769.5:c.1444G>T	p.Glu482Ter	p.E482*	ENST00000261769	NM_004360.3	482	Gaa/Taa					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2208950	2208950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	378	662	0	ENST00000398665.3:c.980C>G	p.Ser327Cys	p.S327C	ENST00000398665	NM_032482.2	327	tCt/tGt					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39763587	39763587	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	130	533	0	ENST00000288319.7:c.865C>T	p.Gln289Ter	p.Q289*	ENST00000288319	NM_182918.3	289	Cag/Tag					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0007227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	10	268	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41219650	41219650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	120	226	0	ENST00000357654.3:c.5049G>T	p.Glu1683Asp	p.E1683D	ENST00000357654	NM_007294.3	1683	gaG/gaT					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	277	542	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0008868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	209	433	0	ENST00000307102.5:c.303_308delGGAGAT	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65330619	65330619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	106	462	0	ENST00000342505.4:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000342505	NM_002227.2	343	Cgg/Tgg					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54961523	54961523	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	50	359	0	ENST00000312783.6:c.109T>A	p.Leu37Ile	p.L37I	ENST00000312783	NM_198436.1	37	Tta/Ata					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0006853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	222	420	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0006853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	103	268	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	260	270	0	ENST00000369535.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000369535	NM_002524.4	12	gGt/gTt					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133748277	133748277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	202	350	0	ENST00000318560.5:c.938T>C	p.Ile313Thr	p.I313T	ENST00000318560	NM_005157.4	313	aTc/aCc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720857	89720857	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	91	172	0	ENST00000371953.3:c.1008C>G	p.Tyr336Ter	p.Y336*	ENST00000371953	NM_000314.4	336	taC/taG					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41566435	41566435	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	336	447	1	ENST00000263253.7:c.4312T>C	p.Cys1438Arg	p.C1438R	ENST00000263253	NM_001429.3	1438	Tgt/Cgt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151879451	151879451	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	153	531	0	ENST00000262189.6:c.5494A>G	p.Lys1832Glu	p.K1832E	ENST00000262189	NM_170606.2	1832	Aaa/Gaa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44950031	44950031	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007146-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	230	664	0	ENST00000377967.4:c.3800T>G	p.Ile1267Arg	p.I1267R	ENST00000377967	NM_021140.2	1267	aTa/aGa					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1237	1527	589	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	350	526	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828914	72828914	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147043604		P-0006455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	80	712	1	ENST00000268489.5:c.7667C>T	p.Ala2556Val	p.A2556V	ENST00000268489	NM_006885.3	2556	gCg/gTg					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30668352	30668352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	85	680	2	ENST00000376406.3:c.6160C>T	p.Arg2054Trp	p.R2054W	ENST00000376406	NM_014641.2	2054	Cgg/Tgg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68842337	68842337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	134	471	1	ENST00000261769.5:c.398C>T	p.Ser133Phe	p.S133F	ENST00000261769	NM_004360.3	133	tCt/tTt					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41244696	41244696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	109	536	1	ENST00000357654.3:c.2852G>A	p.Arg951Lys	p.R951K	ENST00000357654	NM_007294.3	951	aGg/aAg					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149433955	149433955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	53	468	3	ENST00000286301.3:c.2693C>A	p.Thr898Asn	p.T898N	ENST00000286301	NM_005211.3	898	aCc/aAc					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90955516	90955516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	78	409	0	ENST00000265433.3:c.2149A>G	p.Thr717Ala	p.T717A	ENST00000265433	NM_002485.4	717	Aca/Gca					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8485983	8485983	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	47	549	0	ENST00000356435.5:c.2834C>A	p.Ala945Glu	p.A945E	ENST00000356435		945	gCa/gAa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108199854	108199854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	74	356	0	ENST00000278616.4:c.7196A>G	p.Gln2399Arg	p.Q2399R	ENST00000278616	NM_000051.3	2399	cAa/cGa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	149	370	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	57	447	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc					NEWRECORD																																																																									
HOXB13	0	MSKCC	GRCh37	17	46805730	46805730	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	47	509	2	ENST00000290295.7:c.226G>T	p.Ala76Ser	p.A76S	ENST00000290295	NM_006361.5	76	Gct/Tct					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15292614	15292614	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	26	287	0	ENST00000263388.2:c.2567-2A>T		p.X856_splice	ENST00000263388	NM_000435.2	856						NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039610	47039610	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	34	169	0	ENST00000329236.7:c.829-1G>A		p.X277_splice	ENST00000329236	NM_001204466.1	277						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579849	7579849	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	125	436	0	ENST00000269305.4:c.64del	p.Leu22TyrfsTer22	p.L22Yfs*22	ENST00000269305	NM_001126112.2	22	Cta/ta					NEWRECORD																																																																									
RAB35	0	MSKCC	GRCh37	12	120541725	120541725	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1146	71	645	0	ENST00000229340.5:c.132T>G	p.Asp44Glu	p.D44E	ENST00000229340	NM_006861.6	44	gaT/gaG					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10257130	10257130	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	54	331	0	ENST00000340748.4:c.2743del	p.Glu915ArgfsTer42	p.E915Rfs*42	ENST00000340748		915	Gag/ag					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	68	424	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	66	415	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267490	198267490	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	19	380	0	ENST00000335508.6:c.1867T>C	p.Tyr623His	p.Y623H	ENST00000335508	NM_012433.2	623	Tat/Cat					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67592123	67592123	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	43	473	0	ENST00000274335.5:c.1939C>G	p.Leu647Val	p.L647V	ENST00000274335		647	Ctt/Gtt					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50905504	50905504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	44	626	0	ENST00000440232.2:c.632G>A	p.Arg211His	p.R211H	ENST00000440232	NM_002691.3	211	cGc/cAc					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100608879	100608879	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005219-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	28	645	0	ENST00000308731.7:c.1729A>T	p.Lys577Ter	p.K577*	ENST00000308731	NM_000061.2	577	Aaa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	852	470	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	283	642	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574030	7574030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	355	533	0	ENST00000269305.4:c.997del	p.Arg333ValfsTer12	p.R333Vfs*12	ENST00000269305	NM_001126112.2	333	Cgt/gt					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86658488	86658488	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	92	437	0	ENST00000274376.6:c.1453G>T	p.Gly485Cys	p.G485C	ENST00000274376	NM_002890.2	485	Ggc/Tgc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32164151	32164151	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	101	358	0	ENST00000375023.3:c.5248G>T	p.Ala1750Ser	p.A1750S	ENST00000375023	NM_004557.3	1750	Gcc/Tcc					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467910	50467910	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	87	255	0	ENST00000331340.3:c.1145T>C	p.Val382Ala	p.V382A	ENST00000331340	NM_006060.4	382	gTg/gCg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49427531	49427531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009905-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	121	460	0	ENST00000301067.7:c.10957G>A	p.Gly3653Arg	p.G3653R	ENST00000301067	NM_003482.3	3653	Gga/Aga					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120471712	120471712	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75423398		P-0005953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	524	314	0	ENST00000256646.2:c.3779G>A	p.Arg1260His	p.R1260H	ENST00000256646	NM_024408.3	1260	cGt/cAt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108165688	108165688	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	544	362	0	ENST00000278616.4:c.4811A>T	p.Asp1604Val	p.D1604V	ENST00000278616	NM_000051.3	1604	gAt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	217	323	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974792	21974792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	108	135	0	ENST00000304494.5:c.35C>T	p.Ser12Leu	p.S12L	ENST00000304494	NM_000077.4	12	tCg/tTg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974792	21974792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	108	135	0	ENST00000304494.5:c.35C>T	p.Ser12Leu	p.S12L	ENST00000304494	NM_000077.4	12	tCg/tTg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44929487	44929487	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	276	456	0	ENST00000377967.4:c.2587C>G	p.Gln863Glu	p.Q863E	ENST00000377967	NM_021140.2	863	Cag/Gag					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106180867	106180867	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	270	358	1	ENST00000380013.4:c.3895A>G	p.Lys1299Glu	p.K1299E	ENST00000380013	NM_001127208.2	1299	Aag/Gag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857152	9857152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	175	352	0	ENST00000330684.3:c.4249C>T	p.Arg1417Trp	p.R1417W	ENST00000330684	NM_001134407.1	1417	Cgg/Tgg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68847399	68847399	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	176	305	0	ENST00000261769.5:c.1320+1G>C		p.X440_splice	ENST00000261769	NM_004360.3	440						NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15961875	15961875	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	175	281	0	ENST00000268712.3:c.5920G>T	p.Glu1974Ter	p.E1974*	ENST00000268712	NM_006311.3	1974	Gag/Tag					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15366218	15366218	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	190	391	0	ENST00000263377.2:c.1937A>T	p.Asn646Ile	p.N646I	ENST00000263377	NM_058243.2	646	aAt/aTt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57474036	57474036	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs750429818		P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	181	224	0	ENST00000371085.3:c.253G>A	p.Asp85Asn	p.D85N	ENST00000371085	NM_000516.4	85	Gat/Aat					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186502382	186502384	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1450	402	480	0	ENST00000323963.5:c.109_111del	p.Asp37del	p.D37del	ENST00000323963		35	ttTGAt/ttt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916935	178916947	+	protein_altering_variant	In_Frame_Del	DEL	CGTGAAGAAAAGA	CGTGAAGAAAAGA	G			P-0006355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	892	524	0	ENST00000263967.3:c.322_334delinsG	p.Arg108_Ile112delinsVal	p.R108_I112delinsV	ENST00000263967	NM_006218.2	108	CGTGAAGAAAAGAtc/Gtc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52696294	52696294	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0008301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	42	316	0	ENST00000394830.3:c.385-2A>T		p.X129_splice	ENST00000394830	NM_018313.4	129						NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295257	1295257	+	upstream_gene_variant	5'Flank	SNP	C	C	T			P-0008301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	26	207	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36652146	36652146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	52	253	0	ENST00000244741.5:c.268G>A	p.Gly90Arg	p.G90R	ENST00000244741	NM_000389.4	90	Gga/Aga					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022774	31022790	+	frameshift_variant	Frame_Shift_Del	DEL	CACTGGGGACCAGCCAT	CACTGGGGACCAGCCAT	-			P-0008301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	39	205	0	ENST00000375687.4:c.2259_2275del	p.Thr754ProfsTer14	p.T754Pfs*14	ENST00000375687	NM_015338.5	753	ccCACTGGGGACCAGCCATgc/ccgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			731	321	486	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738230	145738230	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs186739072		P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			464	152	329	0	ENST00000428558.2:c.2755G>A	p.Ala919Thr	p.A919T	ENST00000428558	NM_004260.3	919	Gcc/Acc					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5022020	5022020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			652	75	489	0	ENST00000381652.3:c.33G>T	p.Met11Ile	p.M11I	ENST00000381652	NM_004972.3	11	atG/atT					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8633317	8633317	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			840	127	614	0	ENST00000356435.5:c.352G>A	p.Glu118Lys	p.E118K	ENST00000356435		118	Gaa/Aaa					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87635188	87635188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			432	63	335	0	ENST00000277120.3:c.2240C>T	p.Thr747Met	p.T747M	ENST00000277120		747	aCg/aTg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133210798	133210798	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			732	103	616	0	ENST00000320574.5:c.5978A>T	p.Gln1993Leu	p.Q1993L	ENST00000320574	NM_006231.2	1993	cAg/cTg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			275	127	398	0	ENST00000171111.5:c.994G>T	p.Gly332Cys	p.G332C	ENST00000171111	NM_203500.1	332	Ggc/Tgc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610694	10610694	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			98	55	150	0	ENST00000171111.5:c.16A>T	p.Arg6Trp	p.R6W	ENST00000171111	NM_203500.1	6	Agg/Tgg					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189582044	189582057	+	frameshift_variant	Frame_Shift_Del	DEL	CTACTGCCAAATTG	CTACTGCCAAATTG	-			P-0003964-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			588	45	386	0	ENST00000264731.3:c.604_617del	p.Tyr202LysfsTer29	p.Y202Kfs*29	ENST00000264731	NM_003722.4	201	ctCTACTGCCAAATTGca/ctca					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174758	112174761	+	frameshift_variant	Frame_Shift_Del	DEL	AAGA	AAGA	-			P-0005782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	22	464	0	ENST00000257430.4:c.3467_3470del	p.Glu1156GlyfsTer8	p.E1156Gfs*8	ENST00000257430	NM_000038.5	1156	gAAGAg/gg					NEWRECORD																																																																									
CDKN2C	0	MSKCC	GRCh37	1	51436086	51436086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	16	269	0	ENST00000262662.1:c.46G>A	p.Gly16Arg	p.G16R	ENST00000262662		16	Ggg/Agg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112163701	112163701	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0005782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	53	619	0	ENST00000257430.4:c.1624C>T	p.Gln542Ter	p.Q542*	ENST00000257430	NM_000038.5	542	Cag/Tag					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110249717	110249717	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	282	535	0	ENST00000374672.4:c.958G>C	p.Gly320Arg	p.G320R	ENST00000374672	NM_004235.4	320	Ggt/Cgt					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103514875	103514875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	111	452	0	ENST00000355739.4:c.1376C>T	p.Ala459Val	p.A459V	ENST00000355739	NM_000123.3	459	gCc/gTc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44938568	44938568	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	16	309	0	ENST00000377967.4:c.3116A>T	p.Gln1039Leu	p.Q1039L	ENST00000377967	NM_021140.2	1039	cAg/cTg					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190728530	190728530	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	502	495	3	ENST00000441310.2:c.1918G>T	p.Glu640Ter	p.E640*	ENST00000441310	NM_000534.4	640	Gaa/Taa					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153249468	153249468	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	321	521	0	ENST00000281708.4:c.1310G>T	p.Gly437Val	p.G437V	ENST00000281708	NM_033632.3	437	gGa/gTa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	116	425	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	61	261	2	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91358367	91358367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	130	588	2	ENST00000355112.3:c.4112C>T	p.Thr1371Met	p.T1371M	ENST00000355112	NM_000057.2	1371	aCg/aTg					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2220648	2220648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	303	640	2	ENST00000326181.6:c.265G>A	p.Ala89Thr	p.A89T	ENST00000326181	NM_032271.2	89	Gcc/Acc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	299	347	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37864694	37864694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1562	174	647	1	ENST00000269571.5:c.346G>A	p.Val116Met	p.V116M	ENST00000269571		116	Gtg/Atg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561138	9561138	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	103	487	0	ENST00000353224.5:c.644T>A	p.Leu215His	p.L215H	ENST00000353224	NM_177990.2	215	cTc/cAc					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123195709	123195709	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	215	394	0	ENST00000218089.9:c.1623A>C	p.Arg541Ser	p.R541S	ENST00000218089	NM_001042749.1	541	agA/agC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	436	645	0	ENST00000269305.4:c.821T>G	p.Val274Gly	p.V274G	ENST00000269305	NM_001126112.2	274	gTt/gGt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212652836	212652836	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	178	674	0	ENST00000342788.4:c.470A>G	p.Tyr157Cys	p.Y157C	ENST00000342788	NM_005235.2	157	tAt/tGt					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169946	32169946	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	450	675	2	ENST00000375023.3:c.3662G>A	p.Trp1221Ter	p.W1221*	ENST00000375023	NM_004557.3	1221	tGg/tAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	166	659	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	86	391	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89445074	89445074	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	71	449	0	ENST00000336596.2:c.1394G>T	p.Gly465Val	p.G465V	ENST00000336596	NM_005233.5	465	gGg/gTg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142266679	142266679	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146504354		P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	298	463	0	ENST00000350721.4:c.3245G>A	p.Arg1082His	p.R1082H	ENST00000350721	NM_001184.3	1082	cGt/cAt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55973903	55973903	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	61	277	0	ENST00000263923.4:c.1412+1G>T		p.X471_splice	ENST00000263923	NM_002253.2	471						NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117632257	117632257	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	58	448	0	ENST00000368508.3:c.6159G>T	p.Leu2053Phe	p.L2053F	ENST00000368508	NM_002944.2	2053	ttG/ttT					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50455144	50455144	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	215	295	0	ENST00000331340.3:c.691G>T	p.Gly231Cys	p.G231C	ENST00000331340	NM_006060.4	231	Ggc/Tgc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115117753	115117753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	71	484	0	ENST00000257566.3:c.682G>A	p.Ala228Thr	p.A228T	ENST00000257566	NM_016569.3	228	Gct/Act					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411970	63411970	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	130	923	0	ENST00000330258.3:c.1197G>T	p.Glu399Asp	p.E399D	ENST00000330258	NM_152424.3	399	gaG/gaT					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48939062	48939074	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTATGAATTCT	TTTTATGAATTCT	-			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	52	348	0	ENST00000267163.4:c.894_906del	p.Phe299LeufsTer4	p.F299Lfs*4	ENST00000267163	NM_000321.2	298	ccTTTTATGAATTCT/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577147	7577147	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	210	612	1	ENST00000269305.4:c.791del	p.Leu264HisfsTer81	p.L264Hfs*81	ENST00000269305	NM_001126112.2	264	cTa/ca					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187525534	187525536	+	missense_variant	Missense_Mutation	ONP	CAC	CAC	AAA			P-0006421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	113	541	0	ENST00000441802.2:c.10543_10545delinsTTT	p.Val3515Phe	p.V3515F	ENST00000441802	NM_005245.3	3515	GTG/TTT					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	290	525	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	200	483	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0006915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	129	360	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692911	89692911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	120	349	0	ENST00000371953.3:c.395G>A	p.Gly132Asp	p.G132D	ENST00000371953	NM_000314.4	132	gGt/gAt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187560928	187560928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	62	362	0	ENST00000441802.2:c.3590C>T	p.Thr1197Ile	p.T1197I	ENST00000441802	NM_005245.3	1197	aCa/aTa					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57753154	57753157	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0006915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	168	384	0	ENST00000274289.3:c.859_862del	p.Glu287LeufsTer5	p.E287Lfs*5	ENST00000274289	NM_006622.3	287	GAAAct/ct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	42	238	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	60	314	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473756	67473756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	49	226	0	ENST00000327367.4:c.836G>A	p.Arg279Lys	p.R279K	ENST00000327367	NM_005902.3	279	aGg/aAg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49438548	49438548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	174	439	0	ENST00000301067.7:c.4942G>A	p.Asp1648Asn	p.D1648N	ENST00000301067	NM_003482.3	1648	Gat/Aat					NEWRECORD																																																																									
PPP6C	0	MSKCC	GRCh37	9	127920568	127920568	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	174	460	0	ENST00000373547.4:c.331C>G	p.Arg111Gly	p.R111G	ENST00000373547	NM_002721.4	111	Cga/Gga					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692886	89692886	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	62	169	0	ENST00000371953.3:c.370T>A	p.Cys124Ser	p.C124S	ENST00000371953	NM_000314.4	124	Tgt/Agt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9862830	9862830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	112	382	1	ENST00000330684.3:c.2473G>A	p.Ala825Thr	p.A825T	ENST00000330684	NM_001134407.1	825	Gct/Act					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577593	7577594	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0005546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	111	275	0	ENST00000269305.4:c.687_688del	p.Thr230HisfsTer9	p.T230Hfs*9	ENST00000269305	NM_001126112.2	229	tgTAcc/tgcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	270	412	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	149	318	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40727168	40727168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	576	396	1	ENST00000373198.4:c.3796G>A	p.Val1266Met	p.V1266M	ENST00000373198	NM_133170.3	1266	Gtg/Atg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117745	70117778	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCATCCGCGAGGCGGTCAGCCAGGTGCTCAAA	GTGCATCCGCGAGGCGGTCAGCCAGGTGCTCAAA	-			P-0006275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	77	421	0	ENST00000245479.2:c.214_247del	p.Cys72AlafsTer27	p.C72Afs*27	ENST00000245479	NM_000346.3	71	gtGTGCATCCGCGAGGCGGTCAGCCAGGTGCTCAAA/gt					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	328	758	1	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441972	52441972	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0005157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	317	545	0	ENST00000460680.1:c.375+2T>C		p.X125_splice	ENST00000460680	NM_004656.3	125						NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245449	153245449	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	259	439	0	ENST00000281708.4:c.1742A>C	p.Gln581Pro	p.Q581P	ENST00000281708	NM_033632.3	581	cAg/cCg					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26970452	26970452	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	346	456	0	ENST00000381527.3:c.821C>G	p.Pro274Arg	p.P274R	ENST00000381527	NM_001260.1	274	cCt/cGt					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204518445	204518445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	22	489	2	ENST00000367182.3:c.1108G>T	p.Val370Phe	p.V370F	ENST00000367182	NM_001278516.1	370	Gtc/Ttc					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81332010	81332010	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	18	515	0	ENST00000222390.5:c.2074G>T	p.Val692Phe	p.V692F	ENST00000222390	NM_000601.4	692	Gtt/Ttt					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81350061	81350061	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	20	408	0	ENST00000222390.5:c.1271G>C	p.Arg424Pro	p.R424P	ENST00000222390	NM_000601.4	424	cGt/cCt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779836	3779836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	14	397	2	ENST00000262367.5:c.5212C>A	p.His1738Asn	p.H1738N	ENST00000262367	NM_004380.2	1738	Cat/Aat					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610498	10610498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	22	385	0	ENST00000171111.5:c.212G>T	p.Arg71Leu	p.R71L	ENST00000171111	NM_203500.1	71	cGg/cTg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11105568	11105568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	54	386	1	ENST00000344626.4:c.1484G>A	p.Gly495Asp	p.G495D	ENST00000344626	NM_003072.3	495	gGc/gAc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8339024	8339025	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0009643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	16	312	0	ENST00000356435.5:c.5276_5277delinsAG	p.Pro1759Gln	p.P1759Q	ENST00000356435		1759	cCA/cAG					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593613	55593613	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	654	488	0	ENST00000288135.5:c.1679T>A	p.Val560Asp	p.V560D	ENST00000288135	NM_000222.2	560	gTt/gAt					NEWRECORD																																																																									
H3F3A	0	MSKCC	GRCh37	1	226252077	226252077	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	17	80	0	ENST00000366813.1:c.25C>T	p.Arg9Cys	p.R9C	ENST00000366813		9	Cgc/Tgc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52662959	52662959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	608	431	1	ENST00000394830.3:c.1394C>T	p.Pro465Leu	p.P465L	ENST00000394830	NM_018313.4	465	cCc/cTc					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55144147	55144147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	509	371	0	ENST00000257290.5:c.1976A>G	p.Asn659Ser	p.N659S	ENST00000257290	NM_006206.4	659	aAc/aGc					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2161467	2161467	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	283	566	0	ENST00000434045.2:c.60G>T	p.Met20Ile	p.M20I	ENST00000434045	NM_001127598.1	20	atG/atT					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2161480	2161480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	266	531	0	ENST00000434045.2:c.47A>G	p.Glu16Gly	p.E16G	ENST00000434045	NM_001127598.1	16	gAa/gGa					NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913514		P-0006773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	40	392	0	ENST00000288135.5:c.2466T>A	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaA					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0006773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	44	299	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66286196	66286196	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	37	434	0	ENST00000273854.3:c.1490G>C	p.Gly497Ala	p.G497A	ENST00000273854	NM_004439.5	497	gGa/gCa					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591247	67591247	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0006773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	41	331	0	ENST00000274335.5:c.1746-1G>C		p.X582_splice	ENST00000274335		582						NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49445257	49445257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	65	437	1	ENST00000301067.7:c.2209C>T	p.Arg737Trp	p.R737W	ENST00000301067	NM_003482.3	737	Cgg/Tgg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	7212	88	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47639661	47639661	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	134	151	0	ENST00000233146.2:c.754C>T	p.Gln252Ter	p.Q252*	ENST00000233146	NM_000251.2	252	Cag/Tag					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49934727	49934727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	270	87	0	ENST00000296474.3:c.2169G>C	p.Glu723Asp	p.E723D	ENST00000296474	NM_002447.2	723	gaG/gaC					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87342702	87342702	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	123	144	0	ENST00000277120.3:c.987C>A	p.Tyr329Ter	p.Y329*	ENST00000277120		329	taC/taA					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46254716	46254908	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGCAGTCTTGTAAAAAGTAAATGGCAATTTTATTTGATATATAAAAGTATTCTTTGTTTTGGAATGCTTTTATATTTAAGTTTCTGTCATCTATAGTTGCATGAAAATTTTCCTTTAGAACCACTAACTTTAGCGAAACTACAAGAGTTATATTTATGATCCATTATGTGGACCTAAACTAAGAAATTTATA	TGGCAGTCTTGTAAAAAGTAAATGGCAATTTTATTTGATATATAAAAGTATTCTTTGTTTTGGAATGCTTTTATATTTAAGTTTCTGTCATCTATAGTTGCATGAAAATTTTCCTTTAGAACCACTAACTTTAGCGAAACTACAAGAGTTATATTTATGATCCATTATGTGGACCTAAACTAAGAAATTTATA	-			P-0007582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	141	235	0	ENST00000334344.6:c.4907_4922+177del		p.X1636_splice	ENST00000334344	NM_152641.2	1636						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	49	344	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0007094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	107	493	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0007094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	88	324	2	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0007094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	37	297	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26101090	26101090	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0007094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	67	535	0	ENST00000435504.4:c.2T>C	p.Met1?	p.M1?	ENST00000435504		1	aTg/aCg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15276250	15276250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	109	549	2	ENST00000263388.2:c.5744G>A	p.Arg1915His	p.R1915H	ENST00000263388	NM_000435.2	1915	cGc/cAc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28626767	28626767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	105	813	0	ENST00000241453.7:c.529G>A	p.Glu177Lys	p.E177K	ENST00000241453	NM_004119.2	177	Gaa/Aaa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40747042	40747042	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	29	574	1	ENST00000373198.4:c.3039+1G>A		p.X1013_splice	ENST00000373198	NM_133170.3	1013						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	71	333	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1219409	1219409	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	62	270	0	ENST00000326873.7:c.461A>T	p.His154Leu	p.H154L	ENST00000326873	NM_000455.4	154	cAc/cTc					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72076772	72076772	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1330	151	579	1	ENST00000357731.5:c.725T>A	p.Leu242Gln	p.L242Q	ENST00000357731	NM_173808.2	242	cTg/cAg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162743316	162743316	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	330	331	0	ENST00000367921.3:c.1786G>A	p.Asp596Asn	p.D596N	ENST00000367921	NM_006182.2	596	Gat/Aat					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52696255	52696255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1246	100	382	0	ENST00000394830.3:c.422G>T	p.Trp141Leu	p.W141L	ENST00000394830	NM_018313.4	141	tGg/tTg					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100998391	100998391	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	27	172	0	ENST00000325455.5:c.1411C>T	p.Gln471Ter	p.Q471*	ENST00000325455	NM_001202474.3	471	Cag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597373	10597373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	104	425	0	ENST00000171111.5:c.1830G>A	p.Met610Ile	p.M610I	ENST00000171111	NM_203500.1	610	atG/atA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	348	507	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645032	67645032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	375	537	0	ENST00000264010.4:c.297G>C	p.Gln99His	p.Q99H	ENST00000264010	NM_006565.3	99	caG/caC					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52712598	52712598	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	44	395	0	ENST00000394830.3:c.154G>T	p.Glu52Ter	p.E52*	ENST00000394830	NM_018313.4	52	Gaa/Taa					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135786489	135786489	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	104	441	0	ENST00000298552.3:c.1041G>A	p.Trp347Ter	p.W347*	ENST00000298552	NM_001162426.1	347	tgG/tgA					NEWRECORD																																																																									
H3F3B	0	MSKCC	GRCh37	17	73775249	73775249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	69	393	0	ENST00000254810.4:c.7C>G	p.Arg3Gly	p.R3G	ENST00000254810	NM_005324.3	3	Cga/Gga					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101525	27101538	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTCTCCATTCCT	AAGTCTCCATTCCT	-			P-0006131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	81	468	0	ENST00000324856.7:c.4807_4820del	p.Lys1603AlafsTer40	p.K1603Afs*40	ENST00000324856	NM_006015.4	1603	AAGTCTCCATTCCTg/g					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	371	401	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118165507	118165507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	263	262	0	ENST00000369448.3:c.17G>C	p.Ser6Thr	p.S6T	ENST00000369448	NM_017709.3	6	aGc/aCc					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372388	55372388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	87	370	0	ENST00000297316.4:c.1078C>T	p.Arg360Cys	p.R360C	ENST00000297316	NM_022454.3	360	Cgc/Tgc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380305	25380305	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	339	346	0	ENST00000256078.4:c.153T>A	p.Cys51Ter	p.C51*	ENST00000256078	NM_033360.2	51	tgT/tgA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578252	7578299	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAA	TCCTTCCACTCGGATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAA	-			P-0006692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	341	489	2	ENST00000269305.4:c.560-10_597del		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878816	151878816	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	838	504	0	ENST00000262189.6:c.6129del	p.Phe2043LeufsTer35	p.F2043Lfs*35	ENST00000262189	NM_170606.2	2043	ttT/tt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	123	251	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0005910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	129	321	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	30	460	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0005910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	173	406	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	329	420	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	201	482	0	ENST00000359013.4:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000359013	NM_001024847.2	471	Gat/Aat					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114903686	114903686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	186	581	0	ENST00000543371.1:c.690C>G	p.Ile230Met	p.I230M	ENST00000543371	NM_001198531.1	230	atC/atG					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108160459	108160459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	197	501	0	ENST00000278616.4:c.4367G>A	p.Gly1456Asp	p.G1456D	ENST00000278616	NM_000051.3	1456	gGc/gAc					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37871571	37871571	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	46	494	0	ENST00000269571.5:c.1181C>A	p.Pro394Gln	p.P394Q	ENST00000269571		394	cCa/cAa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106394	27106398	+	frameshift_variant	Frame_Shift_Del	DEL	CCAAA	CCAAA	-			P-0005910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	128	340	1	ENST00000324856.7:c.6006_6010del	p.Lys2003ProfsTer28	p.K2003Pfs*28	ENST00000324856	NM_006015.4	2002	tCCAAA/t					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151891330	151891330	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	186	409	0	ENST00000262189.6:c.4524del	p.Lys1508AsnfsTer55	p.K1508Nfs*55	ENST00000262189	NM_170606.2	1508	aaA/aa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108170455	108170455	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	141	298	0	ENST00000278616.4:c.5020T>C	p.Cys1674Arg	p.C1674R	ENST00000278616	NM_000051.3	1674	Tgc/Cgc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29002021	29002021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	76	310	1	ENST00000282397.4:c.1144C>T	p.Arg382Cys	p.R382C	ENST00000282397	NM_002019.4	382	Cgc/Tgc					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103527895	103527895	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	127	412	0	ENST00000355739.4:c.3203C>G	p.Ser1068Ter	p.S1068*	ENST00000355739	NM_000123.3	1068	tCa/tGa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444607	49444724	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTAGATGTGCCATGAAGAGTTACAGCTGTTCCAGAATAACAGAGTACTAACATCCCCTTACCTGGTGGCATCAGCTGAGGCGACAAGGATGGCTCCCCAGATGGGGACAACGGCAGC	ATTAGATGTGCCATGAAGAGTTACAGCTGTTCCAGAATAACAGAGTACTAACATCCCCTTACCTGGTGGCATCAGCTGAGGCGACAAGGATGGCTCCCCAGATGGGGACAACGGCAGC	-			P-0006610-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	192	299	0	ENST00000301067.7:c.2742_2798-34del		p.X914_splice	ENST00000301067	NM_003482.3	914						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0007392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	186	233	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578402	7578402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	54	655	0	ENST00000269305.4:c.528C>G	p.Cys176Trp	p.C176W	ENST00000269305	NM_001126112.2	176	tgC/tgG					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	58	627	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0006502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	31	654	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	52	341	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554666	63554666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	34	301	0	ENST00000307078.5:c.73C>T	p.Pro25Ser	p.P25S	ENST00000307078	NM_004655.3	25	Cca/Tca					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61147583	61147583	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	17	114	0	ENST00000295025.8:c.988A>G	p.Thr330Ala	p.T330A	ENST00000295025	NM_002908.2	330	Acc/Gcc					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61147587	61147587	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	30	125	0	ENST00000295025.8:c.992T>C	p.Leu331Ser	p.L331S	ENST00000295025	NM_002908.2	331	tTg/tCg					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	26	261	0	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	20	321	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041734	42041734	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	62	697	1	ENST00000219905.7:c.5929C>T	p.Gln1977Ter	p.Q1977*	ENST00000219905	NM_001164273.1	1977	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	36	239	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5221084	5221084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	64	246	0	ENST00000357368.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000357368	NM_002850.3	1128	Gtc/Atc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11132464	11132468	+	stop_gained	Nonsense_Mutation	ONP	ACGCA	ACGCA	TAGCT			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	28	377	0	ENST00000344626.4:c.2680_2684delinsTAGCT	p.Thr894_Gln895delinsTer	p.T894_Q895delins*	ENST00000344626	NM_003072.3	894	ACGCAg/TAGCTg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47030585	47030585	+	intron_variant	Intron	SNP	T	T	A			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	17	214	0	ENST00000329236.7:c.201+1688T>A		p.*67*	ENST00000329236	NM_001204466.1							NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123217354	123217354	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	21	288	0	ENST00000218089.9:c.3008T>G	p.Leu1003Arg	p.L1003R	ENST00000218089	NM_001042749.1	1003	cTg/cGg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006797-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	401	738	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	141	340	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55955949	55955949	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	40	453	0	ENST00000263923.4:c.3213G>A	p.Trp1071Ter	p.W1071*	ENST00000263923	NM_002253.2	1071	tgG/tgA					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89478254	89478254	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0005527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	25	358	0	ENST00000336596.2:c.2075-2A>G		p.X692_splice	ENST00000336596	NM_005233.5	692						NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108214100	108214100	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0005527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	132	285	0	ENST00000278616.4:c.8418+2T>C		p.X2806_splice	ENST00000278616	NM_000051.3	2806						NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112884138	112884138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	38	330	0	ENST00000351677.2:c.73G>A	p.Val25Ile	p.V25I	ENST00000351677	NM_002834.3	25	Gtt/Att					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041382	47041382	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	81	592	2	ENST00000329236.7:c.1492G>T	p.Glu498Ter	p.E498*	ENST00000329236	NM_001204466.1	498	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	268	273	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	155	300	0	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	132	228	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9784380	9784380	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	102	457	0	ENST00000377346.4:c.2765A>C	p.Lys922Thr	p.K922T	ENST00000377346	NM_005026.3	922	aAg/aCg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212530147	212530147	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	190	369	0	ENST00000342788.4:c.1772A>G	p.Glu591Gly	p.E591G	ENST00000342788	NM_005235.2	591	gAa/gGa					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49397704	49397704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1088	313	432	0	ENST00000418115.1:c.520G>C	p.Ala174Pro	p.A174P	ENST00000418115	NM_001664.2	174	Gct/Cct					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142281762	142281762	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	235	412	0	ENST00000350721.4:c.482G>A	p.Arg161Lys	p.R161K	ENST00000350721	NM_001184.3	161	aGa/aAa					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81350147	81350147	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	86	428	0	ENST00000222390.5:c.1185T>A	p.Asn395Lys	p.N395K	ENST00000222390	NM_000601.4	395	aaT/aaA					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865461	57865461	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	166	619	0	ENST00000228682.2:c.2938A>G	p.Arg980Gly	p.R980G	ENST00000228682	NM_005269.2	980	Agg/Ggg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28919686	28919686	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0007654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	72	315	0	ENST00000282397.4:c.2251A>C	p.Thr751Pro	p.T751P	ENST00000282397	NM_002019.4	751	Acc/Ccc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	309	411	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	52	502	1	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106555074	106555074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	372	399	0	ENST00000369096.4:c.2191G>A	p.Glu731Lys	p.E731K	ENST00000369096	NM_001198.3	731	Gag/Aag					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128852242	128852242	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140172891		P-0006050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	272	487	2	ENST00000249373.3:c.2314C>T	p.Arg772Cys	p.R772C	ENST00000249373	NM_005631.4	772	Cgc/Tgc					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81990331	81990331	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	393	642	0	ENST00000359376.3:c.3602G>A	p.Arg1201His	p.R1201H	ENST00000359376	NM_002661.3	1201	cGc/cAc					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114912191	114912191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	483	863	1	ENST00000543371.1:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000543371	NM_001198531.1	421	Gat/Aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577604	7577604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	237	382	0	ENST00000269305.4:c.677G>A	p.Gly226Asp	p.G226D	ENST00000269305	NM_001126112.2	226	gGc/gAc					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544714	65544714	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	324	620	0	ENST00000358664.4:c.212T>G	p.Ile71Ser	p.I71S	ENST00000358664	NM_002382.4	71	aTc/aGc					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	38	778	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0006028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	119	383	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0006028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	15	106	0	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg					NEWRECORD																																																																									
DCUN1D1	0	MSKCC	GRCh37	3	182665060	182665060	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	75	500	0	ENST00000292782.4:c.666G>T	p.Met222Ile	p.M222I	ENST00000292782	NM_020640.2	222	atG/atT					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45860604	45860604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	128	623	0	ENST00000391945.4:c.1403C>A	p.Pro468His	p.P468H	ENST00000391945	NM_000400.3	468	cCc/cAc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765497	66765497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	96	454	0	ENST00000374690.3:c.509C>T	p.Thr170Ile	p.T170I	ENST00000374690	NM_000044.3	170	aCt/aTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	86	239	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215646188	215646188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	59	172	0	ENST00000260947.4:c.410G>A	p.Gly137Glu	p.G137E	ENST00000260947	NM_000465.2	137	gGa/gAa					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55979609	55979609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	55	300	0	ENST00000263923.4:c.838C>A	p.Gln280Lys	p.Q280K	ENST00000263923	NM_002253.2	280	Cag/Aag					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106158419	106158419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	60	194	0	ENST00000380013.4:c.3320C>A	p.Ser1107Ter	p.S1107*	ENST00000380013	NM_001127208.2	1107	tCa/tAa					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162683698	162683698	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	24	207	0	ENST00000366898.1:c.271G>C	p.Ala91Pro	p.A91P	ENST00000366898	NM_004562.2	91	Gcg/Ccg					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145742501	145742501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	22	182	0	ENST00000428558.2:c.287G>A	p.Arg96Gln	p.R96Q	ENST00000428558	NM_004260.3	96	cGg/cAg					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986866	36986866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	40	57	0	ENST00000354822.5:c.823C>A	p.Pro275Thr	p.P275T	ENST00000354822	NM_001079668.2	275	Ccg/Acg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1219414	1219414	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	33	149	0	ENST00000326873.7:c.464+2T>A		p.X155_splice	ENST00000326873	NM_000455.4	155						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10599874	10599874	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	59	276	0	ENST00000171111.5:c.1702G>T	p.Val568Phe	p.V568F	ENST00000171111	NM_203500.1	568	Gtc/Ttc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40899091	40899091	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	18	296	0	ENST00000373198.4:c.2179C>A	p.Pro727Thr	p.P727T	ENST00000373198	NM_133170.3	727	Cca/Aca					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123227920	123227920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	19	327	0	ENST00000218089.9:c.3631G>A	p.Val1211Ile	p.V1211I	ENST00000218089	NM_001042749.1	1211	Gtt/Att					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	249	401	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041178	47041178	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	543	742	0	ENST00000329236.7:c.1374del	p.Lys458AsnfsTer168	p.K458Nfs*168	ENST00000329236	NM_001204466.1	458	Aaa/aa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099988	27099989	+	splice_donor_variant	Splice_Site	DNP	GT	GT	TA			P-0005825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	346	647	0	ENST00000324856.7:c.3866+1_3866+2delinsTA		p.X1289_splice	ENST00000324856	NM_006015.4	1289						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	95	229	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	155	296	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180039610	180039610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs202140363		P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	125	342	1	ENST00000261937.6:c.3433C>T	p.Arg1145Cys	p.R1145C	ENST00000261937	NM_182925.4	1145	Cgc/Tgc					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	329	320	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25497874	25497874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	86	363	0	ENST00000264709.3:c.575C>T	p.Ala192Val	p.A192V	ENST00000264709	NM_175629.2	192	gCg/gTg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851891	134851891	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	106	263	1	ENST00000398015.3:c.1297G>A	p.Ala433Thr	p.A433T	ENST00000398015	NM_004441.4	433	Gcc/Acc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55980321	55980321	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	52	443	0	ENST00000263923.4:c.770A>C	p.Asp257Ala	p.D257A	ENST00000263923	NM_002253.2	257	gAc/gCc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66361249	66361249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	73	299	0	ENST00000273854.3:c.923G>A	p.Gly308Glu	p.G308E	ENST00000273854	NM_004439.5	308	gGg/gAg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174466	112174466	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	112	358	0	ENST00000257430.4:c.3175G>T	p.Glu1059Ter	p.E1059*	ENST00000257430	NM_000038.5	1059	Gaa/Taa					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38279362	38279362	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	69	531	1	ENST00000425967.3:c.1127A>C	p.Asn376Thr	p.N376T	ENST00000425967	NM_001174067.1	376	aAc/aCc					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94204764	94204764	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	44	308	0	ENST00000323929.3:c.821T>C	p.Leu274Pro	p.L274P	ENST00000323929	NM_005591.3	274	cTt/cCt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0006978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	209	456	0	ENST00000329236.7:c.1459+1G>C		p.X487_splice	ENST00000329236	NM_001204466.1	487						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1154	128	595	0	ENST00000269305.4:c.817C>A	p.Arg273Ser	p.R273S	ENST00000269305	NM_001126112.2	273	Cgt/Agt					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25470497	25470497	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	85	402	0	ENST00000264709.3:c.977G>C	p.Arg326Pro	p.R326P	ENST00000264709	NM_175629.2	326	cGc/cCc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212251859	212251859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	44	261	0	ENST00000342788.4:c.3200G>C	p.Arg1067Pro	p.R1067P	ENST00000342788	NM_005235.2	1067	cGa/cCa					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93967210	93967210	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	52	538	2	ENST00000369303.4:c.2142G>T	p.Met714Ile	p.M714I	ENST00000369303	NM_004440.3	714	atG/atT					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974677	21974677	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	126	512	0	ENST00000304494.5:c.150G>T	p.Gln50His	p.Q50H	ENST00000304494	NM_000077.4	50	caG/caT					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974677	21974677	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	126	512	0	ENST00000304494.5:c.150G>T	p.Gln50His	p.Q50H	ENST00000304494	NM_000077.4	50	caG/caT					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43620429	43620429	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	53	318	0	ENST00000355710.3:c.3038G>C	p.Arg1013Thr	p.R1013T	ENST00000355710	NM_020975.4	1013	aGa/aCa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108139160	108139160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	51	461	0	ENST00000278616.4:c.2662G>A	p.Glu888Lys	p.E888K	ENST00000278616	NM_000051.3	888	Gaa/Aaa					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41226371	41226371	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1101	93	630	0	ENST00000357654.3:c.4652C>G	p.Ser1551Cys	p.S1551C	ENST00000357654	NM_007294.3	1551	tCt/tGt					NEWRECORD																																																																									
SRSF2	0	MSKCC	GRCh37	17	74732266	74732269	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	TTT			P-0008915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1498	119	748	0	ENST00000359995.5:c.640_643delinsAAA	p.Glu214LysfsTer18	p.E214Kfs*18	ENST00000359995	NM_001195427.1	214	GAAGag/AAAag					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435603	110435603	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004516-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			146	43	70	0	ENST00000375856.3:c.2798C>T	p.Pro933Leu	p.P933L	ENST00000375856	NM_003749.2	933	cCg/cTg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	39	233	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	57	440	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27094441	27094441	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	49	244	1	ENST00000324856.7:c.3149A>G	p.Asp1050Gly	p.D1050G	ENST00000324856	NM_006015.4	1050	gAc/gGc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48951144	48951144	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	167	332	0	ENST00000267163.4:c.1306C>T	p.Gln436Ter	p.Q436*	ENST00000267163	NM_000321.2	436	Cag/Tag					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2103403	2103403	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	44	334	0	ENST00000219476.3:c.286G>T	p.Glu96Ter	p.E96*	ENST00000219476	NM_000548.3	96	Gag/Tag					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	104	543	1	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2191170	2191170	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	314	694	2	ENST00000398665.3:c.424G>T	p.Asp142Tyr	p.D142Y	ENST00000398665	NM_032482.2	142	Gac/Tac					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8486130	8486130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	112	544	0	ENST00000356435.5:c.2687C>T	p.Ser896Leu	p.S896L	ENST00000356435		896	tCa/tTa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108172518	108172518	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	126	325	0	ENST00000278616.4:c.5319+2T>G		p.X1773_splice	ENST00000278616	NM_000051.3	1773						NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380285	25380285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	192	435	1	ENST00000256078.4:c.173C>T	p.Thr58Ile	p.T58I	ENST00000256078	NM_033360.2	58	aCa/aTa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11123691	11123691	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	56	496	0	ENST00000344626.4:c.2341A>T	p.Met781Leu	p.M781L	ENST00000344626	NM_003072.3	781	Atg/Ttg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207029	1207029	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	171	362	0	ENST00000326873.7:c.118del	p.Arg40AlafsTer11	p.R40Afs*11	ENST00000326873	NM_000455.4	39	cgC/cg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602692	10602692	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	180	513	0	ENST00000171111.5:c.886del	p.Arg296AlafsTer21	p.R296Afs*21	ENST00000171111	NM_203500.1	296	Cgc/gc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577569	7577569	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	95	612	0	ENST00000269305.4:c.712T>G	p.Cys238Gly	p.C238G	ENST00000269305	NM_001126112.2	238	Tgt/Ggt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0004916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	169	206	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0006881-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	36	273	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	150	464	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
MAP2K2	5605	MSKCC	GRCh37	19	4101272	4101272	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs370799450		P-0008858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	150	363	1	ENST00000262948.5:c.535C>T	p.Arg179Trp	p.R179W	ENST00000262948	NM_030662.3	179	Cgg/Tgg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32172027	32172027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	121	415	0	ENST00000375023.3:c.3005G>A	p.Arg1002His	p.R1002H	ENST00000375023	NM_004557.3	1002	cGc/cAc					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986886	36986886	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	47	116	0	ENST00000354822.5:c.803G>T	p.Gly268Val	p.G268V	ENST00000354822	NM_001079668.2	268	gGc/gTc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42028756	42028756	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	33	697	0	ENST00000219905.7:c.4294G>C	p.Val1432Leu	p.V1432L	ENST00000219905	NM_001164273.1	1432	Gtg/Ctg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72831762	72831762	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	35	671	1	ENST00000268489.5:c.4819C>T	p.Gln1607Ter	p.Q1607*	ENST00000268489	NM_006885.3	1607	Cag/Tag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023242	27023333	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCACGGAGCCGCCCGGCGGCGGCGGTGGCGGCAGCAGCGATGGGGTGGGGGCGCCTCCTCACTCAGCCGCGGCCGCCTTGCCGCCCCCAG	CCTCACGGAGCCGCCCGGCGGCGGCGGTGGCGGCAGCAGCGATGGGGTGGGGGCGCCTCCTCACTCAGCCGCGGCCGCCTTGCCGCCCCCAG	-			P-0008858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	42	239	0	ENST00000324856.7:c.351_442del	p.Thr118ArgfsTer251	p.T118Rfs*251	ENST00000324856	NM_006015.4	116	aaCCTCACGGAGCCGCCCGGCGGCGGCGGTGGCGGCAGCAGCGATGGGGTGGGGGCGCCTCCTCACTCAGCCGCGGCCGCCTTGCCGCCCCCAGcc/aacc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0005736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	30	561	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955538	48955538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	35	362	0	ENST00000267163.4:c.1654C>T	p.Arg552Ter	p.R552*	ENST00000267163	NM_000321.2	552	Cga/Tga					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25965150	25965150	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	29	438	0	ENST00000435504.4:c.4056C>G	p.Ser1352Arg	p.S1352R	ENST00000435504		1352	agC/agG					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3788602	3788602	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	32	454	0	ENST00000262367.5:c.4352A>G	p.His1451Arg	p.H1451R	ENST00000262367	NM_004380.2	1451	cAt/cGt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68846124	68846129	+	inframe_deletion	In_Frame_Del	DEL	CACTGA	CACTGA	-			P-0005736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	29	403	0	ENST00000261769.5:c.1098_1103delTGACAC	p.Asp367_Thr368del	p.D367_T368del	ENST00000261769	NM_004360.3	365	gtCACTGAc/gtc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061118	38061121	+	frameshift_variant	Frame_Shift_Del	DEL	GGCC	GGCC	-			P-0005698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	153	159	0	ENST00000250448.2:c.868_871del	p.Gly290LeufsTer30	p.G290Lfs*30	ENST00000250448	NM_004496.3	290	GGCCct/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	337	755	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0005103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	89	598	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173656	112173656	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	132	540	0	ENST00000257430.4:c.2365C>T	p.Gln789Ter	p.Q789*	ENST00000257430	NM_000038.5	789	Cag/Tag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	432	490	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49927985	49927985	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	368	939	2	ENST00000296474.3:c.3743G>A	p.Arg1248His	p.R1248H	ENST00000296474	NM_002447.2	1248	cGc/cAc					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675555	30675555	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	368	870	0	ENST00000376406.3:c.2801A>G	p.Glu934Gly	p.E934G	ENST00000376406	NM_014641.2	934	gAa/gGa					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	868	633	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187557239	187557239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	273	749	0	ENST00000441802.2:c.4123C>T	p.His1375Tyr	p.H1375Y	ENST00000441802	NM_005245.3	1375	Cac/Tac					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176618925	176618925	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	322	1012	0	ENST00000439151.2:c.968T>C	p.Val323Ala	p.V323A	ENST00000439151	NM_022455.4	323	gTt/gCt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0009164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	92	397	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009164-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	95	246	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003945-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			55	441	326	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711879	89711879	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0003945-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			76	103	378	0	ENST00000371953.3:c.497T>G	p.Val166Gly	p.V166G	ENST00000371953	NM_000314.4	166	gTa/gGa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	214	409	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	43	219	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	120	451	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11169724	11169724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	103	491	0	ENST00000361445.4:c.7429G>A	p.Glu2477Lys	p.E2477K	ENST00000361445	NM_004958.3	2477	Gaa/Aaa					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226570852	226570852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	53	232	0	ENST00000366794.5:c.1044G>C	p.Leu348Phe	p.L348F	ENST00000366794	NM_001618.3	348	ttG/ttC					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099261	157099261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	41	425	0	ENST00000346085.5:c.198C>A	p.Asn66Lys	p.N66K	ENST00000346085	NM_020732.3	66	aaC/aaA					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	101984948	101984948	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	51	186	0	ENST00000282441.5:c.395T>G	p.Leu132Arg	p.L132R	ENST00000282441	NM_001130145.2	132	cTg/cGg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46231458	46231458	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	199	431	0	ENST00000334344.6:c.1298G>T	p.Cys433Phe	p.C433F	ENST00000334344	NM_152641.2	433	tGc/tTc					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103506135	103506135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	77	348	4	ENST00000355739.4:c.293C>T	p.Ala98Val	p.A98V	ENST00000355739	NM_000123.3	98	gCg/gTg					NEWRECORD																																																																									
DNAJB1	0	MSKCC	GRCh37	19	14628954	14628954	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	105	529	0	ENST00000254322.2:c.208G>C	p.Glu70Gln	p.E70Q	ENST00000254322	NM_006145.1	70	Gaa/Caa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165101	47165111	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAATTTTAA	GAAAATTTTAA	-			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	165	362	0	ENST00000409792.3:c.1015_1025del	p.Leu339SerfsTer4	p.L339Sfs*4	ENST00000409792	NM_014159.6	339	TTAAAATTTTCa/a					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81606120	81606120	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	122	575	0	ENST00000298171.2:c.791del	p.Pro264HisfsTer4	p.P264Hfs*4	ENST00000298171	NM_000369.2	264	Cca/ca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	394	595	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189587157	189587157	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	83	458	0	ENST00000264731.3:c.1174A>G	p.Lys392Glu	p.K392E	ENST00000264731	NM_003722.4	392	Aaa/Gaa					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153244280	153244280	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	139	287	1	ENST00000281708.4:c.1877C>A	p.Ala626Asp	p.A626D	ENST00000281708	NM_033632.3	626	gCt/gAt					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43615110	43615110	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	175	623	0	ENST00000355710.3:c.2524G>C	p.Asp842His	p.D842H	ENST00000355710	NM_020975.4	842	Gat/Cat					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11129654	11129654	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	497	579	0	ENST00000344626.4:c.2460C>G	p.Tyr820Ter	p.Y820*	ENST00000344626	NM_003072.3	820	taC/taG					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	37	383	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	475	538	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70118951	70118951	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	185	800	0	ENST00000245479.2:c.523C>T	p.Gln175Ter	p.Q175*	ENST00000245479	NM_000346.3	175	Cag/Tag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266090	41266253	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	TTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTA	-			P-0008753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	260	664	0	ENST00000349496.5:c.90_241+12del		p.X30_splice	ENST00000349496	NM_001904.3	30						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	299	327	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	108	283	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66189835	66189835	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	240	429	0	ENST00000273854.3:c.3111G>T	p.Leu1037Phe	p.L1037F	ENST00000273854	NM_004439.5	1037	ttG/ttT					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14029051	14029051	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	96	261	0	ENST00000311895.7:c.1262G>C	p.Arg421Thr	p.R421T	ENST00000311895	NM_005236.2	421	aGa/aCa					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36937951	36937951	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	173	467	0	ENST00000361632.4:c.885C>G	p.Cys295Trp	p.C295W	ENST00000361632		295	tgC/tgG					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36939207	36939207	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1368	167	466	0	ENST00000361632.4:c.502C>T	p.Gln168Ter	p.Q168*	ENST00000361632		168	Cag/Tag					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156830856	156830856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	157	260	0	ENST00000524377.1:c.130G>T	p.Gly44Cys	p.G44C	ENST00000524377	NM_002529.3	44	Ggc/Tgc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248749	212248749	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	166	247	0	ENST00000342788.4:c.3518C>G	p.Ser1173Cys	p.S1173C	ENST00000342788	NM_005235.2	1173	tCt/tGt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212989584	212989584	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	239	374	0	ENST00000342788.4:c.127G>T	p.Glu43Ter	p.E43*	ENST00000342788	NM_005235.2	43	Gaa/Taa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89462411	89462411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	49	236	1	ENST00000336596.2:c.1883G>A	p.Gly628Glu	p.G628E	ENST00000336596	NM_005233.5	628	gGa/gAa					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189612254	189612254	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	83	258	0	ENST00000264731.3:c.2006G>C	p.Arg669Pro	p.R669P	ENST00000264731	NM_003722.4	669	cGc/cCc					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150016357	150016357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	215	281	1	ENST00000253339.5:c.349G>T	p.Asp117Tyr	p.D117Y	ENST00000253339		117	Gat/Tat					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508841	106508841	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	354	318	0	ENST00000359195.3:c.835G>T	p.Glu279Ter	p.E279*	ENST00000359195	NM_002649.2	279	Gag/Tag					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128829000	128829000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	26	29	0	ENST00000249373.3:c.8C>A	p.Ala3Asp	p.A3D	ENST00000249373	NM_005631.4	3	gCt/gAt					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23539108	23539108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	380	422	1	ENST00000380871.4:c.331G>T	p.Gly111Cys	p.G111C	ENST00000380871	NM_006167.3	111	Ggc/Tgc					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38287372	38287372	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	111	350	0	ENST00000425967.3:c.285G>C	p.Gln95His	p.Q95H	ENST00000425967	NM_001174067.1	95	caG/caC					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8331600	8331600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	508	465	0	ENST00000356435.5:c.5516C>G	p.Pro1839Arg	p.P1839R	ENST00000356435		1839	cCc/cGc					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101891137	101891137	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	256	336	0	ENST00000374994.4:c.98C>T	p.Ala33Val	p.A33V	ENST00000374994	NM_004612.2	33	gCg/gTg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18524244	18524244	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	199	371	0	ENST00000266497.5:c.1756G>A	p.Glu586Lys	p.E586K	ENST00000266497		586	Gaa/Aaa					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18524246	18524246	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	187	368	3	ENST00000266497.5:c.1757+1G>T		p.X586_splice	ENST00000266497		586						NEWRECORD																																																																									
NFKBIA	0	MSKCC	GRCh37	14	35873653	35873653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	94	381	0	ENST00000216797.5:c.198G>C	p.Trp66Cys	p.W66C	ENST00000216797	NM_020529.2	66	tgG/tgC					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88472420	88472420	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	139	299	0	ENST00000360948.2:c.2133+2T>A		p.X711_splice	ENST00000360948	NM_001012338.2	711						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29585438	29585438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	90	336	1	ENST00000358273.4:c.4250C>T	p.Ala1417Val	p.A1417V	ENST00000358273	NM_001042492.2	1417	gCc/gTc					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78923309	78923309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	138	361	0	ENST00000306801.3:c.3332C>T	p.Ala1111Val	p.A1111V	ENST00000306801	NM_020761.2	1111	gCg/gTg					NEWRECORD																																																																									
BCL2	0	MSKCC	GRCh37	18	60795994	60795994	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	81	284	0	ENST00000333681.4:c.586-2A>C		p.X196_splice	ENST00000333681		196						NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2226416	2226416	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	83	359	0	ENST00000398665.3:c.3896C>T	p.Ser1299Phe	p.S1299F	ENST00000398665	NM_032482.2	1299	tCc/tTc					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7142878	7142878	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	332	337	1	ENST00000302850.5:c.2491G>T	p.Glu831Ter	p.E831*	ENST00000302850	NM_000208.2	831	Gag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602374	10602374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	417	446	0	ENST00000171111.5:c.1204C>T	p.Gln402Ter	p.Q402*	ENST00000171111	NM_203500.1	402	Cag/Tag					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39750381	39750381	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	112	355	0	ENST00000361337.2:c.1996A>G	p.Lys666Glu	p.K666E	ENST00000361337	NM_003286.2	666	Aaa/Gaa					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42852417	42852417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	229	330	0	ENST00000398585.3:c.669G>T	p.Arg223Ser	p.R223S	ENST00000398585	NM_001135099.1	223	agG/agT					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411331	63411331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	288	210	0	ENST00000330258.3:c.1836G>T	p.Glu612Asp	p.E612D	ENST00000330258	NM_152424.3	612	gaG/gaT					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18715664	18715664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	291	332	0	ENST00000266497.5:c.3497del	p.Pro1166LeufsTer4	p.P1166Lfs*4	ENST00000266497		1165	ttC/tt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243899	46243900	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	340	401	0	ENST00000334344.6:c.1996_1997del	p.Gln666AsnfsTer40	p.Q666Nfs*40	ENST00000334344	NM_152641.2	665	ACa/a					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40713382	40713383	+	missense_variant	Missense_Mutation	DNP	CG	CG	GA			P-0009017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	197	359	0	ENST00000373198.4:c.4132_4133delinsTC	p.Arg1378Ser	p.R1378S	ENST00000373198	NM_133170.3	1378	CGa/TCa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11217302	11217302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	474	336	1	ENST00000361445.4:c.4376C>A	p.Ala1459Asp	p.A1459D	ENST00000361445	NM_004958.3	1459	gCc/gAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	59	431	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	81	535	1	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48586262	48586262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	44	396	0	ENST00000342988.3:c.931C>T	p.Gln311Ter	p.Q311*	ENST00000342988	NM_005359.5	311	Cag/Tag					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56437511	56437511	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0007635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	47	314	0	ENST00000407977.2:c.951del	p.Glu318ArgfsTer101	p.E318Rfs*101	ENST00000407977		317	acA/ac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	118	376	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	127	375	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	128	284	1	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48951101	48951171	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TATAGGATACATCTTTAAAGAGAAATTTGCTAAAGCTGTGGGACAGGGTTGTGTCGAAATTGGATCACAGG	TATAGGATACATCTTTAAAGAGAAATTTGCTAAAGCTGTGGGACAGGGTTGTGTCGAAATTGGATCACAGG	-			P-0004789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	174	368	0	ENST00000267163.4:c.1265_1332+3del		p.X422_splice	ENST00000267163	NM_000321.2	422						NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106253	27106271	+	frameshift_variant	Frame_Shift_Del	DEL	TAGAGGACGAACCCCACAG	TAGAGGACGAACCCCACAG	-			P-0004789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	130	398	1	ENST00000324856.7:c.5866_5884del	p.Glu1956ArgfsTer53	p.E1956Rfs*53	ENST00000324856	NM_006015.4	1955	cTAGAGGACGAACCCCACAGt/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	296	427	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716212	52716212	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	94	328	0	ENST00000322088.6:c.656C>T	p.Ser219Leu	p.S219L	ENST00000322088	NM_014225.5	219	tCg/tTg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100334	27100334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	283	482	1	ENST00000324856.7:c.4046C>T	p.Pro1349Leu	p.P1349L	ENST00000324856	NM_006015.4	1349	cCt/cTt					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42797977	42797977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	36	513	0	ENST00000575354.2:c.4029C>A	p.Asp1343Glu	p.D1343E	ENST00000575354	NM_015125.3	1343	gaC/gaA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	179	426	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42788861	42788861	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	122	376	1	ENST00000575354.2:c.5A>G	p.Tyr2Cys	p.Y2C	ENST00000575354	NM_015125.3	2	tAt/tGt					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7989483	7989483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	50	313	1	ENST00000319144.4:c.203G>A	p.Arg68His	p.R68H	ENST00000319144	NM_001139.2	68	cGc/cAc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628521	187628521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	84	481	1	ENST00000441802.2:c.2461G>T	p.Glu821Ter	p.E821*	ENST00000441802	NM_005245.3	821	Gag/Tag					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198265050	198265050	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	115	264	0	ENST00000335508.6:c.2827A>G	p.Lys943Glu	p.K943E	ENST00000335508	NM_012433.2	943	Aaa/Gaa					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215661784	215661784	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	128	491	0	ENST00000260947.4:c.215+1G>T		p.X72_splice	ENST00000260947	NM_000465.2	72						NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138407716	138407716	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	138	313	0	ENST00000289153.2:c.2136+1G>T		p.X712_splice	ENST00000289153	NM_006219.2	712						NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532683	187532683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	69	416	0	ENST00000441802.2:c.9710C>A	p.Ala3237Asp	p.A3237D	ENST00000441802	NM_005245.3	3237	gCc/gAc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151874572	151874572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	52	288	0	ENST00000262189.6:c.7966G>A	p.Glu2656Lys	p.E2656K	ENST00000262189	NM_170606.2	2656	Gaa/Aaa					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110249877	110249877	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	41	158	0	ENST00000374672.4:c.798C>A	p.Tyr266Ter	p.Y266*	ENST00000374672	NM_004235.4	266	taC/taA					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405892	70405892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1199	174	576	0	ENST00000373644.4:c.3406G>T	p.Gly1136Cys	p.G1136C	ENST00000373644	NM_030625.2	1136	Ggt/Tgt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100996801	100996801	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1914	217	770	1	ENST00000325455.5:c.1726G>T	p.Gly576Cys	p.G576C	ENST00000325455	NM_001202474.3	576	Ggc/Tgc					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21620033	21620033	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	67	535	0	ENST00000382592.4:c.133A>G	p.Thr45Ala	p.T45A	ENST00000382592	NM_014572.2	45	Act/Gct					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32936725	32936725	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	70	380	0	ENST00000380152.3:c.7871A>G	p.Tyr2624Cys	p.Y2624C	ENST00000380152		2624	tAt/tGt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030410	49030410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	62	293	0	ENST00000267163.4:c.1885G>A	p.Glu629Lys	p.E629K	ENST00000267163	NM_000321.2	629	Gag/Aag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857223	9857223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1440	121	613	0	ENST00000330684.3:c.4178C>A	p.Ser1393Tyr	p.S1393Y	ENST00000330684	NM_001134407.1	1393	tCc/tAc					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56782278	56782278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1597	118	628	2	ENST00000308159.5:c.119G>C	p.Gly40Ala	p.G40A	ENST00000308159	NM_014669.4	40	gGa/gCa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15942965	15942965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	53	329	1	ENST00000268712.3:c.6737C>T	p.Ser2246Leu	p.S2246L	ENST00000268712	NM_006311.3	2246	tCa/tTa					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2216421	2216421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	96	339	2	ENST00000398665.3:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000398665	NM_032482.2	689	Cgg/Tgg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561186	9561186	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	73	416	0	ENST00000353224.5:c.596A>T	p.Tyr199Phe	p.Y199F	ENST00000353224	NM_177990.2	199	tAt/tTt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600016	10600024	+	stop_gained	Nonsense_Mutation	ONP	ATAGATACA	ATAGATACA	CTAGACACC			P-0009083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	101	313	0	ENST00000171111.5:c.1552_1560delinsGGTGTCTAG	p.Cys518_Tyr520delinsGlyValTer	p.C518_Y520delinsGV*	ENST00000171111	NM_203500.1	518	TGTATCTAT/GGTGTCTAG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579716	7579716	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	435	957	1	ENST00000269305.4:c.80delC	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	27	cCt/ct					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145737819	145737819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	133	572	0	ENST00000428558.2:c.3011G>A	p.Arg1004Gln	p.R1004Q	ENST00000428558	NM_004260.3	1004	cGg/cAg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	82	454	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	109	407	0	ENST00000269305.4:c.517G>C	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ctg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0006564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	34	324	1	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114920447	114920447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	92	693	0	ENST00000543371.1:c.1388G>A	p.Cys463Tyr	p.C463Y	ENST00000543371	NM_001198531.1	463	tGc/tAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	429	739	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120483305	120483305	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	60	689	0	ENST00000256646.2:c.3056G>C	p.Gly1019Ala	p.G1019A	ENST00000256646	NM_024408.3	1019	gGa/gCa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32166770	32166770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	44	704	0	ENST00000375023.3:c.4468C>T	p.Arg1490Trp	p.R1490W	ENST00000375023	NM_004557.3	1490	Cgg/Tgg					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99500582	99500582	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	151	567	0	ENST00000268035.6:c.4015A>T	p.Ser1339Cys	p.S1339C	ENST00000268035	NM_000875.3	1339	Agc/Tgc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41277247	41277253	+	frameshift_variant	Frame_Shift_Del	DEL	TTGTACC	TTGTACC	-			P-0004889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	104	529	0	ENST00000349496.5:c.1716_1722del	p.Cys573GlufsTer6	p.C573Efs*6	ENST00000349496	NM_001904.3	572	ggTTGTACC/gg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	171	265	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3801782	3801782	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	206	381	1	ENST00000262367.5:c.3724A>T	p.Thr1242Ser	p.T1242S	ENST00000262367	NM_004380.2	1242	Aca/Tca					NEWRECORD																																																																									
SMARCA4	6597	MSKCC	GRCh37	19	11132434	11132434	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	316	579	1	ENST00000344626.4:c.2650C>T	p.His884Tyr	p.H884Y	ENST00000344626	NM_003072.3	884	Cac/Tac					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39726885	39726885	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	174	400	1	ENST00000361337.2:c.883A>T	p.Thr295Ser	p.T295S	ENST00000361337	NM_003286.2	295	Acc/Tcc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41573129	41573129	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	470	386	0	ENST00000263253.7:c.5414T>C	p.Phe1805Ser	p.F1805S	ENST00000263253	NM_001429.3	1805	tTc/tCc					NEWRECORD																																																																									
NPM1	0	MSKCC	GRCh37	5	170814991	170814991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	111	242	0	ENST00000296930.5:c.39G>T	p.Arg13Ser	p.R13S	ENST00000296930	NM_002520.6	13	agG/agT					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3788618	3788618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	221	556	0	ENST00000262367.5:c.4336C>T	p.Arg1446Cys	p.R1446C	ENST00000262367	NM_004380.2	1446	Cgc/Tgc					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14021961	14021961	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	685	487	0	ENST00000311895.7:c.661A>G	p.Thr221Ala	p.T221A	ENST00000311895	NM_005236.2	221	Acc/Gcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	547	556	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16004877	16004877	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	226	465	0	ENST00000268712.3:c.2377G>C	p.Ala793Pro	p.A793P	ENST00000268712	NM_006311.3	793	Gca/Cca					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2199923	2199923	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	432	462	0	ENST00000398665.3:c.692G>A	p.Arg231Gln	p.R231Q	ENST00000398665	NM_032482.2	231	cGa/cAa					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411199	63411199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	281	267	0	ENST00000330258.3:c.1968G>A	p.Met656Ile	p.M656I	ENST00000330258	NM_152424.3	656	atG/atA					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411625	63411625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005122-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	859	409	0	ENST00000330258.3:c.1542C>A	p.Ser514Arg	p.S514R	ENST00000330258	NM_152424.3	514	agC/agA					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175755	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	116	284	0	ENST00000257430.4:c.4464del	p.Leu1488PhefsTer19	p.L1488Ffs*19	ENST00000257430	NM_000038.5	1488	ttA/tt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	238	298	1	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099835	157099835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	237	395	1	ENST00000346085.5:c.772C>T	p.Gln258Ter	p.Q258*	ENST00000346085	NM_020732.3	258	Caa/Taa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151845780	151845780	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	305	396	0	ENST00000262189.6:c.13232G>A	p.Gly4411Glu	p.G4411E	ENST00000262189	NM_170606.2	4411	gGa/gAa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174467	112174471	+	frameshift_variant	Frame_Shift_Del	DEL	AAATA	AAATA	-			P-0006669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	239	332	0	ENST00000257430.4:c.3179_3183del	p.Ile1060ThrfsTer3	p.I1060Tfs*3	ENST00000257430	NM_000038.5	1059	gAAATA/g					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	57	412	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0009288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	73	393	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44966661	44966662	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0009288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	59	296	0	ENST00000377967.4:c.3886_3887del	p.Leu1296SerfsTer36	p.L1296Sfs*36	ENST00000377967	NM_021140.2	1295	tgTCtt/tgtt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	31	662	1	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0005041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	20	547	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	81	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578458	7578458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	51	373	0	ENST00000269305.4:c.472C>T	p.Arg158Cys	p.R158C	ENST00000269305	NM_001126112.2	158	Cgc/Tgc					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93979371	93979371	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	77	723	0	ENST00000369303.4:c.1457G>T	p.Arg486Met	p.R486M	ENST00000369303	NM_004440.3	486	aGg/aTg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120509040	120509040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	85	440	0	ENST00000256646.2:c.1526G>A	p.Cys509Tyr	p.C509Y	ENST00000256646	NM_024408.3	509	tGt/tAt					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25470925	25470925	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	83	561	0	ENST00000264709.3:c.836A>T	p.Asp279Val	p.D279V	ENST00000264709	NM_175629.2	279	gAt/gTt					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47656912	47656912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	55	428	0	ENST00000233146.2:c.1108G>T	p.Ala370Ser	p.A370S	ENST00000233146	NM_000251.2	370	Gca/Tca					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209108284	209108284	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	70	514	0	ENST00000345146.2:c.565A>T	p.Ile189Phe	p.I189F	ENST00000345146	NM_005896.2	189	Att/Ttt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47161717	47161717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	83	589	2	ENST00000409792.3:c.4409C>T	p.Pro1470Leu	p.P1470L	ENST00000409792	NM_014159.6	1470	cCa/cTa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164601	47164601	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	53	526	0	ENST00000409792.3:c.1525A>T	p.Lys509Ter	p.K509*	ENST00000409792	NM_014159.6	509	Aag/Tag					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86564452	86564452	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	68	462	0	ENST00000274376.6:c.184G>T	p.Gly62Cys	p.G62C	ENST00000274376	NM_002890.2	62	Ggt/Tgt					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158719	26158719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	21	144	0	ENST00000289316.2:c.322G>T	p.Ala108Ser	p.A108S	ENST00000289316	NM_138720.2	108	Gcc/Tcc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106526727	106526727	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	49	329	0	ENST00000359195.3:c.3020A>G	p.Gln1007Arg	p.Q1007R	ENST00000359195	NM_002649.2	1007	cAg/cGg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100408	8100408	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	118	675	0	ENST00000346208.3:c.382G>T	p.Gly128Trp	p.G128W	ENST00000346208		128	Ggg/Tgg					NEWRECORD																																																																									
SMARCD1	0	MSKCC	GRCh37	12	50490728	50490728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	102	477	0	ENST00000394963.4:c.1365G>T	p.Trp455Cys	p.W455C	ENST00000394963	NM_003076.4	455	tgG/tgT					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88680714	88680714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	61	565	0	ENST00000360948.2:c.543G>T	p.Lys181Asn	p.K181N	ENST00000360948	NM_001012338.2	181	aaG/aaT					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29576054	29576054	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1226	90	601	1	ENST00000358273.4:c.4027A>T	p.Thr1343Ser	p.T1343S	ENST00000358273	NM_001042492.2	1343	Act/Tct					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4094482	4094482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	53	455	1	ENST00000262948.5:c.1061C>T	p.Pro354Leu	p.P354L	ENST00000262948	NM_030662.3	354	cCa/cTa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139400147	139400148	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0009924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	70	540	0	ENST00000277541.6:c.4200_4201delinsTT	p.Gln1400_Gly1401delinsHisTrp	p.Q1400_G1401delinsHW	ENST00000277541	NM_017617.3	1400	caGGgg/caTTgg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47129632	47129632	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	85	511	0	ENST00000409792.3:c.5248C>T	p.Gln1750Ter	p.Q1750*	ENST00000409792	NM_014159.6	1750	Cag/Tag					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102207640	102207640	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0005891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	177	758	0	ENST00000263464.3:c.1622A>T	p.Asp541Val	p.D541V	ENST00000263464	NM_001165.4	541	gAt/gTt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593603	55593606	+	protein_altering_variant	In_Frame_Del	DEL	TGGA	TGGA	C			P-0005891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	115	470	0	ENST00000288135.5:c.1669_1672delinsC	p.Trp557_Lys558delinsGln	p.W557_K558delinsQ	ENST00000288135	NM_000222.2	557	TGGAag/Cag					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	228	452	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76890192	76890192	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	193	514	0	ENST00000373344.5:c.4702G>T	p.Val1568Phe	p.V1568F	ENST00000373344	NM_000489.3	1568	Gtt/Ttt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123195683	123195683	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	107	487	0	ENST00000218089.9:c.1597G>T	p.Ala533Ser	p.A533S	ENST00000218089	NM_001042749.1	533	Gct/Tct					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533765	533765	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	443	697	0	ENST00000311189.7:c.290+1G>T		p.X97_splice	ENST00000311189		97						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	388	362	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49446807	49446807	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	159	402	0	ENST00000301067.7:c.1003C>G	p.Pro335Ala	p.P335A	ENST00000301067	NM_003482.3	335	Ccc/Gcc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49448509	49448509	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	168	392	0	ENST00000301067.7:c.202C>G	p.Leu68Val	p.L68V	ENST00000301067	NM_003482.3	68	Ctc/Gtc					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33792770	33792770	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	43	87	0	ENST00000498907.2:c.551C>G	p.Pro184Arg	p.P184R	ENST00000498907	NM_004364.3	184	cCg/cGg					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	73	316	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	59	145	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602799	10602799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	231	344	0	ENST00000171111.5:c.779G>A	p.Arg260Gln	p.R260Q	ENST00000171111	NM_203500.1	260	cGa/cAa					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42791004	42791004	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	57	290	0	ENST00000575354.2:c.149A>G	p.Asp50Gly	p.D50G	ENST00000575354	NM_015125.3	50	gAc/gGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0008374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	37	369	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	47	367	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37059036	37059036	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	42	404	0	ENST00000231790.2:c.830A>T	p.Glu277Val	p.E277V	ENST00000231790	NM_000249.3	277	gAa/gTa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	456	383	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	166	338	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	330	452	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	138	306	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78796958	78796958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	54	349	0	ENST00000306801.3:c.1071G>A	p.Met357Ile	p.M357I	ENST00000306801	NM_020761.2	357	atG/atA					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43804266	43804266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	133	427	0	ENST00000372470.3:c.266C>A	p.Thr89Asn	p.T89N	ENST00000372470	NM_005373.2	89	aCc/aAc					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71101737	71101737	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	197	486	0	ENST00000318789.4:c.461T>A	p.Leu154Ter	p.L154*	ENST00000318789	NM_032682.5	154	tTg/tAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40733355	40733355	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	217	192	0	ENST00000373198.4:c.3451C>T	p.Gln1151Ter	p.Q1151*	ENST00000373198	NM_133170.3	1151	Caa/Taa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938947	76938947	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	536	676	1	ENST00000373344.5:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000373344	NM_000489.3	601	Aaa/Gaa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175622	112175622	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007511-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	271	503	0	ENST00000257430.4:c.4333del	p.Thr1445GlnfsTer28	p.T1445Qfs*28	ENST00000257430	NM_000038.5	1444	cAa/ca					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101211	27101211	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	22	621	0	ENST00000324856.7:c.4493G>A	p.Trp1498Ter	p.W1498*	ENST00000324856	NM_006015.4	1498	tGg/tAg					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43815015	43815015	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	17	611	0	ENST00000372470.3:c.1550T>G	p.Phe517Cys	p.F517C	ENST00000372470	NM_005373.2	517	tTt/tGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578397	7578397	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007877-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	29	231	0	ENST00000269305.4:c.533del	p.His178ProfsTer69	p.H178Pfs*69	ENST00000269305	NM_001126112.2	178	cAc/cc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212251576	212251576	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0003908-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			533	109	248	0	ENST00000342788.4:c.3481+2T>A		p.X1161_splice	ENST00000342788	NM_005235.2	1161						NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39914637	39914644	+	frameshift_variant	Frame_Shift_Del	DEL	CATAAGTT	CATAAGTT	-			P-0003908-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			612	45	346	0	ENST00000378444.4:c.4718_4725del	p.Glu1573GlyfsTer10	p.E1573Gfs*10	ENST00000378444	NM_001123385.1	1573	gAACTTATG/g					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	658	350	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45864886	45864886	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200043231		P-0009274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	212	415	0	ENST00000391945.4:c.1133G>A	p.Arg378His	p.R378H	ENST00000391945	NM_000400.3	378	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112170772	112170772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	265	421	0	ENST00000257430.4:c.1868G>A	p.Arg623Gln	p.R623Q	ENST00000257430	NM_000038.5	623	cGg/cAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40747127	40747127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	192	303	1	ENST00000373198.4:c.2955G>T	p.Glu985Asp	p.E985D	ENST00000373198	NM_133170.3	985	gaG/gaT					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	52	238	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0007203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	25	343	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546847	9546847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			232	168	389	0	ENST00000353224.5:c.1175C>T	p.Ser392Leu	p.S392L	ENST00000353224	NM_177990.2	392	tCg/tTg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			186	723	409	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16254623	16254623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			653	183	694	2	ENST00000375759.3:c.1888C>T	p.Arg630Cys	p.R630C	ENST00000375759	NM_015001.2	630	Cgt/Tgt					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143159128	143159128	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			455	176	516	0	ENST00000262992.4:c.725C>T	p.Pro242Leu	p.P242L	ENST00000262992	NM_001101669.1	242	cCc/cTc					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149500561	149500561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			455	81	383	0	ENST00000261799.4:c.2476G>A	p.Asp826Asn	p.D826N	ENST00000261799	NM_002609.3	826	Gac/Aac					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781200	135781200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			478	566	860	0	ENST00000298552.3:c.1765C>T	p.Pro589Ser	p.P589S	ENST00000298552	NM_001162426.1	589	Cca/Tca					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123274723	123274723	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			602	240	563	1	ENST00000358487.5:c.1195C>T	p.Arg399Ter	p.R399*	ENST00000358487	NM_000141.4	399	Cga/Tga					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64135623	64135623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			780	318	580	0	ENST00000334205.4:c.1091C>T	p.Pro364Leu	p.P364L	ENST00000334205	NM_003942.2	364	cCc/cTc					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577469	64577469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			582	212	534	0	ENST00000337652.1:c.113C>T	p.Ser38Phe	p.S38F	ENST00000337652	NM_130803.2	38	tCc/tTc					NEWRECORD																																																																									
EED	0	MSKCC	GRCh37	11	85989562	85989562	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			399	192	522	1	ENST00000263360.6:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000263360	NM_003797.3	441	Cga/Tga					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115118782	115118782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			561	289	535	0	ENST00000257566.3:c.559C>T	p.His187Tyr	p.H187Y	ENST00000257566	NM_016569.3	187	Cac/Tac					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133219905	133219905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			543	252	528	0	ENST00000320574.5:c.4456C>T	p.His1486Tyr	p.H1486Y	ENST00000320574	NM_006231.2	1486	Cat/Tat					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914811	32914811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			850	384	941	2	ENST00000380152.3:c.6319C>T	p.Pro2107Ser	p.P2107S	ENST00000380152		2107	Cct/Tct					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042616	42042616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			607	362	783	0	ENST00000219905.7:c.6811C>T	p.Gln2271Ter	p.Q2271*	ENST00000219905	NM_001164273.1	2271	Cag/Tag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9892232	9892232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			588	260	521	0	ENST00000330684.3:c.2258G>A	p.Gly753Glu	p.G753E	ENST00000330684	NM_001134407.1	753	gGg/gAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41419965	41419965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	443	509	1	ENST00000373198.4:c.356C>T	p.Ala119Val	p.A119V	ENST00000373198	NM_133170.3	119	gCc/gTc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70354585	70354585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			676	243	614	0	ENST00000374080.3:c.4750G>A	p.Asp1584Asn	p.D1584N	ENST00000374080		1584	Gac/Aac					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76888754	76888754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			786	231	766	1	ENST00000373344.5:c.5075G>A	p.Gly1692Glu	p.G1692E	ENST00000373344	NM_000489.3	1692	gGa/gAa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151853077	151853077	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005733-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			521	109	293	0	ENST00000262189.6:c.11878C>T	p.Arg3960Ter	p.R3960*	ENST00000262189	NM_170606.2	3960	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173968	112173968	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	227	333	1	ENST00000257430.4:c.2677G>T	p.Glu893Ter	p.E893*	ENST00000257430	NM_000038.5	893	Gaa/Taa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221995	1221995	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	455	593	1	ENST00000326873.7:c.910C>T	p.Arg304Trp	p.R304W	ENST00000326873	NM_000455.4	304	Cgg/Tgg					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	235442	235442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	309	414	0	ENST00000264932.6:c.1248C>A	p.Asn416Lys	p.N416K	ENST00000264932	NM_004168.2	416	aaC/aaA					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37876039	37876039	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	472	595	0	ENST00000269571.5:c.1899-1G>T		p.X633_splice	ENST00000269571		633						NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11144059	11144059	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	544	623	1	ENST00000344626.4:c.3640A>T	p.Ile1214Phe	p.I1214F	ENST00000344626	NM_003072.3	1214	Atc/Ttc					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986863	36986872	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGGCACCC	GCGGGCACCC	-			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	149	120	0	ENST00000354822.5:c.817_826del	p.Gly273SerfsTer19	p.G273Sfs*19	ENST00000354822	NM_001079668.2	273	GGGTGCCCGCag/ag					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098980	178098982	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0006084-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	128	229	0	ENST00000397062.3:c.63_65del	p.Asp21_Ile22delinsGlu	p.D21_I22delinsE	ENST00000397062	NM_006164.4	21	gaCATa/gaa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11177061	11177061	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004880-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			740	169	792	0	ENST00000361445.4:c.7016G>T	p.Arg2339Ile	p.R2339I	ENST00000361445	NM_004958.3	2339	aGa/aTa					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119582266	119582266	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0004880-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			555	75	401	0	ENST00000316626.5:c.1135G>T	p.Glu379Ter	p.E379*	ENST00000316626		379	Gaa/Taa					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87570386	87570386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004880-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			679	103	627	0	ENST00000277120.3:c.2126G>A	p.Gly709Glu	p.G709E	ENST00000277120		709	gGg/gAg					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43598057	43598057	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004880-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			409	61	357	0	ENST00000355710.3:c.605T>C	p.Val202Ala	p.V202A	ENST00000355710	NM_020975.4	202	gTg/gCg					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435930	56435930	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004880-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			362	85	356	0	ENST00000407977.2:c.1207C>A	p.Gln403Lys	p.Q403K	ENST00000407977		403	Cag/Aag					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29095917	29095917	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004880-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			476	168	539	0	ENST00000328354.6:c.917G>A	p.Gly306Glu	p.G306E	ENST00000328354	NM_007194.3	306	gGg/gAg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0008559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	116	383	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	253	509	0	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29519861	29519861	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	44	451	0	ENST00000389048.3:c.1710G>C	p.Glu570Asp	p.E570D	ENST00000389048	NM_004304.4	570	gaG/gaC					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65309819	65309819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1519	184	455	0	ENST00000342505.4:c.2331G>C	p.Trp777Cys	p.W777C	ENST00000342505	NM_002227.2	777	tgG/tgC					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163494	47163494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	282	433	0	ENST00000409792.3:c.2632G>T	p.Gly878Cys	p.G878C	ENST00000409792	NM_014159.6	878	Ggt/Tgt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89457260	89457260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	85	450	0	ENST00000336596.2:c.1741C>T	p.Leu581Phe	p.L581F	ENST00000336596	NM_005233.5	581	Ctt/Ttt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89528647	89528647	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	205	362	0	ENST00000336596.2:c.2947G>T	p.Val983Leu	p.V983L	ENST00000336596	NM_005233.5	983	Gtg/Ttg					NEWRECORD																																																																									
FAM175A	0	MSKCC	GRCh37	4	84391537	84391537	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	63	226	0	ENST00000321945.7:c.295T>C	p.Trp99Arg	p.W99R	ENST00000321945	NM_139076.2	99	Tgg/Cgg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117687360	117687360	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	70	541	0	ENST00000368508.3:c.2691G>C	p.Trp897Cys	p.W897C	ENST00000368508	NM_002944.2	897	tgG/tgC					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8528780	8528780	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	90	352	0	ENST00000356435.5:c.353-1G>C		p.X118_splice	ENST00000356435		118						NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	2715	514	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115120954	115120954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	1018	401	0	ENST00000257566.3:c.52C>A	p.His18Asn	p.H18N	ENST00000257566	NM_016569.3	18	Cat/Aat					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061520	38061520	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1445	183	291	1	ENST00000250448.2:c.469G>T	p.Gly157Cys	p.G157C	ENST00000250448	NM_004496.3	157	Ggc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	1055	574	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11094931	11094931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1793	239	496	0	ENST00000344626.4:c.104C>T	p.Ser35Leu	p.S35L	ENST00000344626	NM_003072.3	35	tCg/tTg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41408893	41408893	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1376	675	512	0	ENST00000373198.4:c.533C>A	p.Ala178Asp	p.A178D	ENST00000373198	NM_133170.3	178	gCc/gAc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44929232	44929232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	341	379	0	ENST00000377967.4:c.2332C>A	p.Pro778Thr	p.P778T	ENST00000377967	NM_021140.2	778	Cct/Act					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44929551	44929551	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	251	317	0	ENST00000377967.4:c.2651C>G	p.Ser884Ter	p.S884*	ENST00000377967	NM_021140.2	884	tCa/tGa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041636	47041636	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	888	260	0	ENST00000329236.7:c.1627C>T	p.Gln543Ter	p.Q543*	ENST00000329236	NM_001204466.1	543	Cag/Tag					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11259654	11259654	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	50	367	0	ENST00000361445.4:c.4051G>A	p.Ala1351Thr	p.A1351T	ENST00000361445	NM_004958.3	1351	Gct/Act					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65311203	65311203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	181	372	0	ENST00000342505.4:c.2108G>T	p.Ser703Ile	p.S703I	ENST00000342505	NM_002227.2	703	aGc/aTc					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176085816	176085816	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0006599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	92	380	0	ENST00000367669.3:c.970A>G	p.Ser324Gly	p.S324G	ENST00000367669	NM_022457.5	324	Agt/Ggt					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72427765	72427765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	36	204	0	ENST00000477973.2:c.723G>A	p.Arg242Lys	p.R242K	ENST00000477973	NM_012234.5	242	aGg/aAg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139404281	139404281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006599-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	64	365	1	ENST00000277541.6:c.2873C>T	p.Ala958Val	p.A958V	ENST00000277541	NM_017617.3	958	gCc/gTc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	200	438	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	76	259	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175340	112175340	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	123	354	0	ENST00000257430.4:c.4049A>C	p.Lys1350Thr	p.K1350T	ENST00000257430	NM_000038.5	1350	aAa/aCa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32184978	32184978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	310	547	1	ENST00000375023.3:c.1690G>T	p.Gly564Trp	p.G564W	ENST00000375023	NM_004557.3	564	Ggg/Tgg					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13940411	13940411	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	83	479	0	ENST00000405192.2:c.1095A>T	p.Lys365Asn	p.K365N	ENST00000405192	NM_001163147.1	365	aaA/aaT					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111856596	111856596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	120	139	0	ENST00000341259.2:c.647G>A	p.Arg216His	p.R216H	ENST00000341259	NM_005475.2	216	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175328	112175335	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCAGG	CAGCCAGG	-			P-0006706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	119	378	0	ENST00000257430.4:c.4039_4046del	p.Ala1347GlnfsTer4	p.A1347Qfs*4	ENST00000257430	NM_000038.5	1346	tCAGCCAGG/t					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	188	630	1	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30051637	30051637	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	88	666	0	ENST00000338641.4:c.571T>G	p.Trp191Gly	p.W191G	ENST00000338641	NM_000268.3	191	Tgg/Ggg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142212054	142212054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	53	600	0	ENST00000350721.4:c.5998G>T	p.Gly2000Cys	p.G2000C	ENST00000350721	NM_001184.3	2000	Ggt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175360	112175360	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	178	208	0	ENST00000257430.4:c.4069G>T	p.Gly1357Ter	p.G1357*	ENST00000257430	NM_000038.5	1357	Gga/Tga					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242795030	242795030	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	344	491	1	ENST00000334409.5:c.179C>A	p.Ser60Ter	p.S60*	ENST00000334409	NM_005018.2	60	tCg/tAg					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162864403	162864403	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148990138		P-0009445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	158	323	1	ENST00000366898.1:c.110C>T	p.Pro37Leu	p.P37L	ENST00000366898	NM_004562.2	37	cCg/cTg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1206952	1206952	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	122	199	0	ENST00000326873.7:c.40G>C	p.Glu14Gln	p.E14Q	ENST00000326873	NM_000455.4	14	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579469	7579469	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	131	246	0	ENST00000269305.4:c.218del	p.Val73GlyfsTer50	p.V73Gfs*50	ENST00000269305	NM_001126112.2	73	gTg/gg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0007421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	85	297	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332						NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44945200	44945201	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0007421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	115	254	0	ENST00000377967.4:c.3526_3527del	p.Val1176SerfsTer3	p.V1176Sfs*3	ENST00000377967	NM_021140.2	1175	gGT/g					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577036	7577036	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs876660726		P-0009943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	134	523	2	ENST00000269305.4:c.902del	p.Pro301GlnfsTer44	p.P301Qfs*44	ENST00000269305	NM_001126112.2	301	cCa/ca					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	63	611	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13971206	13971206	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	124	471	0	ENST00000405192.2:c.723G>C	p.Met241Ile	p.M241I	ENST00000405192	NM_001163147.1	241	atG/atC					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108196137	108196137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	36	515	2	ENST00000278616.4:c.6673G>A	p.Ala2225Thr	p.A2225T	ENST00000278616	NM_000051.3	2225	Gct/Act					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15276723	15276723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	158	559	0	ENST00000263388.2:c.5542C>T	p.Arg1848Cys	p.R1848C	ENST00000263388	NM_000435.2	1848	Cgt/Tgt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	226	231	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473780	67473780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	111	256	1	ENST00000327367.4:c.860G>A	p.Arg287Gln	p.R287Q	ENST00000327367	NM_005902.3	287	cGg/cAg					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1806089	1806089	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	211	406	0	ENST00000260795.2:c.1108G>T	p.Gly370Cys	p.G370C	ENST00000260795		370	Ggc/Tgc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142226825	142226825	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	231	309	2	ENST00000350721.4:c.4979C>A	p.Ser1660Ter	p.S1660*	ENST00000350721	NM_001184.3	1660	tCa/tAa					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	404754	404754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	197	373	0	ENST00000399788.2:c.4440C>G	p.Phe1480Leu	p.F1480L	ENST00000399788	NM_001042603.1	1480	ttC/ttG					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42058951	42058951	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	267	536	0	ENST00000219905.7:c.8671C>G	p.Gln2891Glu	p.Q2891E	ENST00000219905	NM_001164273.1	2891	Caa/Gaa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44949156	44949156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	244	199	0	ENST00000377967.4:c.3717G>T	p.Trp1239Cys	p.W1239C	ENST00000377967	NM_021140.2	1239	tgG/tgT					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	106	421	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89347234	89347234	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	446	438	0	ENST00000301030.4:c.5716G>T	p.Ala1906Ser	p.A1906S	ENST00000301030	NM_001256183.1	1906	Gcc/Tcc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0009481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	197	439	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157150545	157150545	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	56	189	0	ENST00000346085.5:c.1727C>G	p.Pro576Arg	p.P576R	ENST00000346085	NM_020732.3	576	cCt/cGt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108186757	108186757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	223	474	0	ENST00000278616.4:c.6115G>A	p.Glu2039Lys	p.E2039K	ENST00000278616	NM_000051.3	2039	Gaa/Aaa					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101911472	101911472	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	40	282	0	ENST00000374994.4:c.1397del	p.Val466GlufsTer6	p.V466Efs*6	ENST00000374994	NM_004612.2	466	gTa/ga					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76912049	76912049	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0009481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	240	517	0	ENST00000373344.5:c.4214+1del		p.X1405_splice	ENST00000373344	NM_000489.3	1405						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	615	264	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	292	279	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573650	48573650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	63	165	1	ENST00000342988.3:c.234G>T	p.Leu78Phe	p.L78F	ENST00000342988	NM_005359.5	78	ttG/ttT					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411395	63411395	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	268	397	0	ENST00000330258.3:c.1772G>T	p.Arg591Met	p.R591M	ENST00000330258	NM_152424.3	591	aGg/aTg					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8075649	8075649	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	169	436	0	ENST00000377482.5:c.31A>T	p.Ile11Phe	p.I11F	ENST00000377482	NM_018948.3	11	Atc/Ttc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628722	187628722	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	209	301	0	ENST00000441802.2:c.2260T>A	p.Tyr754Asn	p.Y754N	ENST00000441802	NM_005245.3	754	Tat/Aat					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149515388	149515388	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	173	207	0	ENST00000261799.4:c.94G>T	p.Gly32Cys	p.G32C	ENST00000261799	NM_002609.3	32	Ggc/Tgc					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137519536	137519536	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	317	332	0	ENST00000367739.4:c.1102G>T	p.Gly368Cys	p.G368C	ENST00000367739	NM_000416.2	368	Ggc/Tgc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133226047	133226047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	212	298	0	ENST00000320574.5:c.3850C>T	p.Arg1284Trp	p.R1284W	ENST00000320574	NM_006231.2	1284	Cgg/Tgg					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45855903	45855903	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	272	260	0	ENST00000391945.4:c.1907G>T	p.Arg636Leu	p.R636L	ENST00000391945	NM_000400.3	636	cGg/cTg					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411815	63411815	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	362	539	0	ENST00000330258.3:c.1352G>T	p.Gly451Val	p.G451V	ENST00000330258	NM_152424.3	451	gGg/gTg					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209103865	209103867	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	275	358	0	ENST00000345146.2:c.1082_1084del	p.Glu361del	p.E361del	ENST00000345146	NM_005896.2	361	gAAGtc/gtc					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30069277	30069277	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	211	232	0	ENST00000338641.4:c.1142del	p.Ala381ValfsTer45	p.A381Vfs*45	ENST00000338641	NM_000268.3	381	gCt/gt					NEWRECORD																																																																									
RHEB	0	MSKCC	GRCh37	7	151181826	151181826	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	251	453	0	ENST00000262187.5:c.189del	p.Gln64LysfsTer13	p.Q64Kfs*13	ENST00000262187	NM_005614.3	63	ggG/gg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	234	391	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	424	382	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546761	9546761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	165	227	0	ENST00000353224.5:c.1261G>A	p.Asp421Asn	p.D421N	ENST00000353224	NM_177990.2	421	Gac/Aac					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89445005	89445005	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112239794		P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	115	235	0	ENST00000336596.2:c.1325C>T	p.Thr442Met	p.T442M	ENST00000336596	NM_005233.5	442	aCg/aTg					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5069966	5069966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	193	262	0	ENST00000381652.3:c.1555G>C	p.Asp519His	p.D519H	ENST00000381652	NM_004972.3	519	Gat/Cat					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5070046	5070046	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	140	155	0	ENST00000381652.3:c.1635G>C	p.Leu545Phe	p.L545F	ENST00000381652	NM_004972.3	545	ttG/ttC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	561	513	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57485759	57485759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	211	325	0	ENST00000371085.3:c.1060G>A	p.Asp354Asn	p.D354N	ENST00000371085	NM_000516.4	354	Gat/Aat					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	141	301	1				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0006157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	359	469	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29448345	29448345	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	90	777	0	ENST00000389048.3:c.3154T>A	p.Phe1052Ile	p.F1052I	ENST00000389048	NM_004304.4	1052	Ttc/Atc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117645576	117645576	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	122	679	0	ENST00000368508.3:c.5560G>A	p.Asp1854Asn	p.D1854N	ENST00000368508	NM_002944.2	1854	Gat/Aat					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18715647	18715647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	92	401	0	ENST00000266497.5:c.3478G>A	p.Glu1160Lys	p.E1160K	ENST00000266497		1160	Gaa/Aaa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32907453	32907453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	46	491	0	ENST00000380152.3:c.1838T>C	p.Leu613Pro	p.L613P	ENST00000380152		613	cTa/cCa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5244104	5244104	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	138	659	0	ENST00000357368.4:c.1378T>C	p.Tyr460His	p.Y460H	ENST00000357368	NM_002850.3	460	Tac/Cac					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42791256	42791256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	132	412	1	ENST00000575354.2:c.316C>T	p.Pro106Ser	p.P106S	ENST00000575354	NM_015125.3	106	Cca/Tca					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45867041	45867041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	87	317	0	ENST00000391945.4:c.1078G>A	p.Gly360Ser	p.G360S	ENST00000391945	NM_000400.3	360	Ggc/Agc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41553332	41553332	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	155	584	0	ENST00000263253.7:c.3421T>A	p.Tyr1141Asn	p.Y1141N	ENST00000263253	NM_001429.3	1141	Tac/Aac					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41564575	41564575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	148	590	0	ENST00000263253.7:c.3997G>A	p.Val1333Met	p.V1333M	ENST00000263253	NM_001429.3	1333	Gtg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0009739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	253	624	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36989307	36989307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	105	473	0	ENST00000354822.5:c.28C>T	p.Arg10Trp	p.R10W	ENST00000354822	NM_001079668.2	10	Cgg/Tgg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29587404	29587404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	96	425	0	ENST00000358273.4:c.4448C>T	p.Ala1483Val	p.A1483V	ENST00000358273	NM_001042492.2	1483	gCa/gTa					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15298128	15298128	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009739-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	97	409	0	ENST00000263388.2:c.1628A>T	p.Asp543Val	p.D543V	ENST00000263388	NM_000435.2	543	gAt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1401	85	537	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37657535	37657538	+	frameshift_variant	Frame_Shift_Del	DEL	CATG	CATG	-			P-0009372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1254	140	591	0	ENST00000447079.4:c.2452_2455del	p.His818ThrfsTer2	p.H818Tfs*2	ENST00000447079	NM_015083.1	818	CATGac/ac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	229	523	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226549731	226549731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	79	497	0	ENST00000366794.5:c.2902G>C	p.Asp968His	p.D968H	ENST00000366794	NM_001618.3	968	Gac/Cac					NEWRECORD																																																																									
PIM1	0	MSKCC	GRCh37	6	37141715	37141715	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	69	380	0	ENST00000373509.5:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000373509	NM_002648.3	264	Cag/Tag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	35	177	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	5541	407	29	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591092	67591092	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	229	263	0	ENST00000274335.5:c.1685G>C	p.Arg562Pro	p.R562P	ENST00000274335		562	cGt/cCt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174688	112174688	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	282	410	2	ENST00000257430.4:c.3397G>C	p.Asp1133His	p.D1133H	ENST00000257430	NM_000038.5	1133	Gat/Cat					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174888	112174888	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	240	311	0	ENST00000257430.4:c.3597G>C	p.Lys1199Asn	p.K1199N	ENST00000257430	NM_000038.5	1199	aaG/aaC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576857	7576857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	541	308	2	ENST00000269305.4:c.989T>C	p.Leu330Pro	p.L330P	ENST00000269305	NM_001126112.2	330	cTt/cCt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29490395	29490395	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0007093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	402	221	0	ENST00000358273.4:c.479+1G>C		p.X160_splice	ENST00000358273	NM_001042492.2	160						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	568	674	0	ENST00000269305.4:c.814G>C	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ctg					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89390166	89390166	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	54	452	0	ENST00000336596.2:c.915G>C	p.Arg305Ser	p.R305S	ENST00000336596	NM_005233.5	305	agG/agC					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49037973	49037973	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0006412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	229	372	0	ENST00000267163.4:c.2211+2T>A		p.X737_splice	ENST00000267163	NM_000321.2	737						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	99	412	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	58	213	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29940494	29940494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1524	105	598	0	ENST00000389048.3:c.737C>G	p.Thr246Ser	p.T246S	ENST00000389048	NM_004304.4	246	aCc/aGc					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220439554	220439554	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1591	102	491	0	ENST00000243786.2:c.407G>T	p.Gly136Val	p.G136V	ENST00000243786	NM_002191.3	136	gGg/gTg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108154953	108154953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0006364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	30	178	0	ENST00000278616.4:c.3747-1G>C		p.X1249_splice	ENST00000278616	NM_000051.3	1249						NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47040679	47040679	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	88	262	2	ENST00000329236.7:c.1080C>A	p.Tyr360Ter	p.Y360*	ENST00000329236	NM_001204466.1	360	taC/taA					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	103	399	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0008310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	222	383	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	49	335	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604653	48604653	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	45	297	0	ENST00000342988.3:c.1475T>G	p.Val492Gly	p.V492G	ENST00000342988	NM_005359.5	492	gTt/gGt					NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0005061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	79	782	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	93	753	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57863222	57863222	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	27	926	0	ENST00000228682.2:c.1317G>C	p.Gln439His	p.Q439H	ENST00000228682	NM_005269.2	439	caG/caC					NEWRECORD																																																																									
CD79A	0	MSKCC	GRCh37	19	42383644	42383644	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs148797987		P-0005061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	51	885	0	ENST00000221972.3:c.419C>A	p.Thr140Asn	p.T140N	ENST00000221972	NM_021601.3	140	aCc/aAc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41573710	41573710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	38	862	0	ENST00000263253.7:c.5995G>A	p.Gly1999Arg	p.G1999R	ENST00000263253	NM_001429.3	1999	Gga/Aga					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8073882	8073888	+	frameshift_variant	Frame_Shift_Del	DEL	CTTGTTA	CTTGTTA	-			P-0005061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	67	1069	1	ENST00000377482.5:c.771_777del	p.Asn258GlnfsTer3	p.N258Qfs*3	ENST00000377482	NM_018948.3	257	ttTAACAAG/tt					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89350146	89350146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	439	641	0	ENST00000301030.4:c.2804C>T	p.Ser935Leu	p.S935L	ENST00000301030	NM_001256183.1	935	tCg/tTg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696430	47696430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	338	335	0	ENST00000347630.2:c.393G>C	p.Trp131Cys	p.W131C	ENST00000347630	NM_001007230.1	131	tgG/tgC					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72827511	72827511	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	469	559	2	ENST00000268489.5:c.9070del	p.Thr3024GlnfsTer52	p.T3024Qfs*52	ENST00000268489	NM_006885.3	3024	Aca/ca					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	28	423	0	ENST00000288135.5:c.1669T>C	p.Trp557Arg	p.W557R	ENST00000288135	NM_000222.2	557	Tgg/Cgg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89858341	89858341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	64	381	0	ENST00000389301.3:c.1219C>T	p.Leu407Phe	p.L407F	ENST00000389301	NM_000135.2	407	Ctt/Ttt					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18278049	18278049	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	102	524	1	ENST00000222254.8:c.1669G>C	p.Asp557His	p.D557H	ENST00000222254	NM_005027.3	557	Gac/Cac					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	37020632	37020632	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	38	262	0	ENST00000358127.4:c.212+1G>A		p.X71_splice	ENST00000358127	NM_001280556.1	71						NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37619305	37619305	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0006574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	49	223	0	ENST00000447079.4:c.981T>G	p.Tyr327Ter	p.Y327*	ENST00000447079	NM_015083.1	327	taT/taG					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696448	47696448	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	29	351	0	ENST00000347630.2:c.375T>G	p.Phe125Leu	p.F125L	ENST00000347630	NM_001007230.1	125	ttT/ttG					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37649112	37649112	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	59	408	0	ENST00000447079.4:c.2218del	p.Gln740LysfsTer13	p.Q740Kfs*13	ENST00000447079	NM_015083.1	739	ggC/gg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0006854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	251	370	0	ENST00000269305.4:c.920-1G>C		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	435	169	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	228	291	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15375227	15375227	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	56	395	0	ENST00000263377.2:c.1200G>C	p.Met400Ile	p.M400I	ENST00000263377	NM_058243.2	400	atG/atC					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56168809	56168809	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007536-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	135	367	0	ENST00000399503.3:c.1663G>C	p.Asp555His	p.D555H	ENST00000399503	NM_005921.1	555	Gat/Cat					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0007166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	19	115	0	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0003916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			39	173	177	0	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45797111	45797111	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			107	202	338	0	ENST00000372115.3:c.1262A>G	p.His421Arg	p.H421R	ENST00000372115	NM_001048171.1	421	cAc/cGc					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226558148	226558148	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			151	204	299	0	ENST00000366794.5:c.2141G>C	p.Ser714Thr	p.S714T	ENST00000366794	NM_001618.3	714	aGt/aCt					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25965685	25965685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			174	150	286	0	ENST00000435504.4:c.3521G>A	p.Ser1174Asn	p.S1174N	ENST00000435504		1174	aGc/aAc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66361136	66361136	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			36	85	207	0	ENST00000273854.3:c.1036G>T	p.Glu346Ter	p.E346*	ENST00000273854	NM_004439.5	346	Gag/Tag					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2962967	2962967	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0003916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			95	137	193	0	ENST00000396946.4:c.1941A>T	p.Arg647Ser	p.R647S	ENST00000396946	NM_032415.4	647	agA/agT					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115844	8115844	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			62	210	359	0	ENST00000346208.3:c.1190C>A	p.Ser397Tyr	p.S397Y	ENST00000346208		397	tCc/tAc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118347601	118347601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			163	118	281	0	ENST00000534358.1:c.3238G>T	p.Gly1080Cys	p.G1080C	ENST00000534358	NM_005933.3	1080	Ggc/Tgc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431930	49431930	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			133	67	235	0	ENST00000301067.7:c.9209T>G	p.Leu3070Arg	p.L3070R	ENST00000301067	NM_003482.3	3070	cTg/cGg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49436366	49436366	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			126	92	349	0	ENST00000301067.7:c.5845C>T	p.Gln1949Ter	p.Q1949*	ENST00000301067	NM_003482.3	1949	Cag/Tag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913663	32913663	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			32	122	172	0	ENST00000380152.3:c.5171T>C	p.Ile1724Thr	p.I1724T	ENST00000380152		1724	aTa/aCa					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10252726	10252726	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003916-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			231	87	246	0	ENST00000340748.4:c.3239C>T	p.Pro1080Leu	p.P1080L	ENST00000340748		1080	cCc/cTc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11270938	11270938	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	270	456	0	ENST00000361445.4:c.3587A>G	p.Asn1196Ser	p.N1196S	ENST00000361445	NM_004958.3	1196	aAt/aGt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42005421	42005421	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	564	794	0	ENST00000219905.7:c.3157C>T	p.Arg1053Ter	p.R1053*	ENST00000219905	NM_001164273.1	1053	Cga/Tga					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435296	56435296	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	131	263	0	ENST00000407977.2:c.1841A>G	p.Gln614Arg	p.Q614R	ENST00000407977		614	cAg/cGg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	33	450	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	46	243	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176665453	176665454	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	22	290	1	ENST00000439151.2:c.4137_4138delinsAA	p.Glu1380Lys	p.E1380K	ENST00000439151	NM_022455.4	1379	ccGGaa/ccAAaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	19	396	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
RAD52	0	MSKCC	GRCh37	12	1023696	1023696	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0004978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	53	216	0	ENST00000358495.3:c.868G>C	p.Ala290Pro	p.A290P	ENST00000358495	NM_134424.2	290	Gcg/Ccg					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23634383	23634383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	22	352	0	ENST00000261584.4:c.2903C>T	p.Ala968Val	p.A968V	ENST00000261584	NM_024675.3	968	gCt/gTt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11317156	11317156	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	192	531	1	ENST00000361445.4:c.338A>T	p.Asn113Ile	p.N113I	ENST00000361445	NM_004958.3	113	aAc/aTc					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161781231	161781231	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	68	348	0	ENST00000366898.1:c.1174A>G	p.Arg392Gly	p.R392G	ENST00000366898	NM_004562.2	392	Aga/Gga					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121434122	121434122	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	118	510	0	ENST00000257555.6:c.1013G>C	p.Gly338Ala	p.G338A	ENST00000257555		338	gGc/gCc					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20153859	20153859	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	62	145	0	ENST00000379607.5:c.201A>C	p.Lys67Asn	p.K67N	ENST00000379607	NM_001412.3	67	aaA/aaC					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151860671	151860671	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	336	544	0	ENST00000262189.6:c.9991del	p.Ser3331ValfsTer30	p.S3331Vfs*30	ENST00000262189	NM_170606.2	3331	Agt/gt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164967	47164967	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004019-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			553	167	406	0	ENST00000409792.3:c.1159delA	p.Thr387LeufsTer97	p.T387Lfs*97	ENST00000409792	NM_014159.6	387	Act/ct					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	42	583	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	13	389	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt					NEWRECORD																																																																									
CDKN2C	0	MSKCC	GRCh37	1	51439563	51439563	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	38	483	0	ENST00000262662.1:c.130-2A>T		p.X44_splice	ENST00000262662		44						NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65321281	65321281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	40	533	0	ENST00000342505.4:c.1559G>T	p.Gly520Val	p.G520V	ENST00000342505	NM_002227.2	520	gGa/gTa					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198281569	198281569	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	50	663	0	ENST00000335508.6:c.562G>T	p.Ala188Ser	p.A188S	ENST00000335508	NM_012433.2	188	Gca/Tca					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142281939	142281939	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	36	331	0	ENST00000350721.4:c.305G>A	p.Trp102Ter	p.W102*	ENST00000350721	NM_001184.3	102	tGg/tAg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8492945	8492945	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	67	562	0	ENST00000356435.5:c.2384C>T	p.Ser795Phe	p.S795F	ENST00000356435		795	tCc/tTc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139399281	139399281	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	64	539	0	ENST00000277541.6:c.4862G>T	p.Gly1621Val	p.G1621V	ENST00000277541	NM_017617.3	1621	gGc/gTc					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12871131	12871131	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	24	263	2	ENST00000228872.4:c.361del	p.Ala121LeufsTer24	p.A121Lfs*24	ENST00000228872	NM_004064.3	120	Ggg/gg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	156	428	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	112	301	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220382	1220382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	135	349	0	ENST00000326873.7:c.475C>T	p.Gln159Ter	p.Q159*	ENST00000326873	NM_000455.4	159	Cag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	149	283	0	ENST00000171111.5:c.994G>T	p.Gly332Cys	p.G332C	ENST00000171111	NM_203500.1	332	Ggc/Tgc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023492	27023492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	185	415	0	ENST00000324856.7:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000324856	NM_006015.4	200	Cag/Tag					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259427	89259427	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	202	460	0	ENST00000336596.2:c.571G>T	p.Ala191Ser	p.A191S	ENST00000336596	NM_005233.5	191	Gcc/Tcc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55971046	55971046	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	160	397	1	ENST00000263923.4:c.1751A>T	p.Tyr584Phe	p.Y584F	ENST00000263923	NM_002253.2	584	tAc/tTc					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57755707	57755707	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	109	211	0	ENST00000274289.3:c.80G>T	p.Gly27Val	p.G27V	ENST00000274289	NM_006622.3	27	gGa/gTa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32190315	32190315	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	97	214	1	ENST00000375023.3:c.424C>T	p.Gln142Ter	p.Q142*	ENST00000375023	NM_004557.3	142	Cag/Tag					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120458	70120458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	361	388	0	ENST00000245479.2:c.1460C>T	p.Pro487Leu	p.P487L	ENST00000245479	NM_000346.3	487	cCt/cTt					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47424426	47424426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	155	403	1	ENST00000377045.4:c.346C>A	p.Leu116Ile	p.L116I	ENST00000377045	NM_001654.4	116	Ctt/Att					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	33	410	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	209	383	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	246	279	1	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57478590	57478590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	223	349	1	ENST00000371085.3:c.262A>G	p.Lys88Glu	p.K88E	ENST00000371085	NM_000516.4	88	Aag/Gag					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44942837	44942842	+	inframe_deletion	In_Frame_Del	DEL	AGGGAG	AGGGAG	-			P-0005075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	261	296	0	ENST00000377967.4:c.3417_3422del	p.Gly1140_Ser1141del	p.G1140_S1141del	ENST00000377967	NM_021140.2	1139	ccAGGGAGc/ccc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29664577	29664577	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	190	651	0	ENST00000358273.4:c.6619G>T	p.Glu2207Ter	p.E2207*	ENST00000358273	NM_001042492.2	2207	Gaa/Taa					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71050149	71050150	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	AT			P-0005811-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	140	470	3	ENST00000318789.4:c.1035_1036delinsAT	p.Met345_Gln346delinsIleTer	p.M345_Q346delinsI*	ENST00000318789	NM_032682.5	345	atGCag/atATag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	117	627	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	31	344	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0007600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	54	787	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41277880	41277880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	155	746	0	ENST00000349496.5:c.1844C>A	p.Ala615Glu	p.A615E	ENST00000349496	NM_001904.3	615	gCa/gAa					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15272302	15272302	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	89	489	0	ENST00000263388.2:c.6137C>A	p.Pro2046Gln	p.P2046Q	ENST00000263388	NM_000435.2	2046	cCa/cAa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0005017-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			831	359	479	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0005017-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			747	283	450	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143003313	143003313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005017-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			807	127	360	0	ENST00000262992.4:c.2513G>A	p.Arg838His	p.R838H	ENST00000262992	NM_001101669.1	838	cGt/cAt					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81388043	81388043	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005017-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			781	176	590	0	ENST00000222390.5:c.332A>T	p.Glu111Val	p.E111V	ENST00000222390	NM_000601.4	111	gAa/gTa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	201	505	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	115	425	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5089863	5089863	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	97	275	0	ENST00000381652.3:c.2761G>A	p.Gly921Ser	p.G921S	ENST00000381652	NM_004972.3	921	Ggt/Agt					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143462	30143462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	17	95	0	ENST00000389048.3:c.64G>A	p.Gly22Arg	p.G22R	ENST00000389048	NM_004304.4	22	Ggg/Agg					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1293475	1293475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	51	393	0	ENST00000310581.5:c.1526C>T	p.Thr509Met	p.T509M	ENST00000310581	NM_198253.2	509	aCg/aTg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341937	8341937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	70	336	0	ENST00000356435.5:c.4703C>T	p.Ala1568Val	p.A1568V	ENST00000356435		1568	gCc/gTc					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56440680	56440680	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	70	530	0	ENST00000407977.2:c.538C>G	p.Gln180Glu	p.Q180E	ENST00000407977		180	Caa/Gaa					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561022	9561022	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	68	321	0	ENST00000353224.5:c.760G>C	p.Glu254Gln	p.E254Q	ENST00000353224	NM_177990.2	254	Gaa/Caa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40739099	40739099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	65	261	0	ENST00000373198.4:c.3185G>T	p.Arg1062Leu	p.R1062L	ENST00000373198	NM_133170.3	1062	cGc/cTc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70347238	70347238	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	86	516	1	ENST00000374080.3:c.2902G>C	p.Glu968Gln	p.E968Q	ENST00000374080		968	Gag/Cag					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	11	509	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55136874	55136874	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	36	663	0	ENST00000257290.5:c.1196A>C	p.Glu399Ala	p.E399A	ENST00000257290	NM_006206.4	399	gAa/gCa					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134526	41134526	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	49	905	2	ENST00000379561.5:c.1102C>A	p.Pro368Thr	p.P368T	ENST00000379561	NM_002015.3	368	Ccc/Acc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108159738	108159738	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	44	492	0	ENST00000278616.4:c.4145del	p.Pro1382HisfsTer4	p.P1382Hfs*4	ENST00000278616	NM_000051.3	1382	Cca/ca					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	346	363	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577524	7577524	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	56	335	0	ENST00000269305.4:c.757A>C	p.Thr253Pro	p.T253P	ENST00000269305	NM_001126112.2	253	Acc/Ccc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	75	426	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40738973	40738973	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	37	290	0	ENST00000373198.4:c.3311G>T	p.Ser1104Ile	p.S1104I	ENST00000373198	NM_133170.3	1104	aGt/aTt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56482552	56482552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	138	381	0	ENST00000267101.3:c.1009G>A	p.Gly337Arg	p.G337R	ENST00000267101	NM_001982.3	337	Ggg/Agg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72830652	72830652	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	142	940	0	ENST00000268489.5:c.5929G>C	p.Gly1977Arg	p.G1977R	ENST00000268489	NM_006885.3	1977	Gga/Cga					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5214696	5214696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	43	387	0	ENST00000357368.4:c.4370G>A	p.Cys1457Tyr	p.C1457Y	ENST00000357368	NM_002850.3	1457	tGt/tAt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087932	27087933	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0008788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	154	396	0	ENST00000324856.7:c.2219_2220delCC	p.Ser740TyrfsTer76	p.S740Yfs*76	ENST00000324856	NM_006015.4	740	tCC/t					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	68	512	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47142966	47142966	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	104	559	0	ENST00000409792.3:c.4997A>G	p.Tyr1666Cys	p.Y1666C	ENST00000409792	NM_014159.6	1666	tAt/tGt					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69222655	69222666	+	inframe_deletion	In_Frame_Del	DEL	GAGATATGTTGT	GAGATATGTTGT	-			P-0004972-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	73	716	0	ENST00000462284.1:c.630_641del	p.Ile211_Glu214del	p.I211_E214del	ENST00000462284	NM_002392.5	210	GAGATATGTTGT/-					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64574693	64574693	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0001526-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			212	254	317	0	ENST00000337652.1:c.799-2A>G		p.X267_splice	ENST00000337652	NM_130803.2	267						NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134825407	134825407	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001526-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			445	79	440	0	ENST00000398015.3:c.923A>G	p.Tyr308Cys	p.Y308C	ENST00000398015	NM_004441.4	308	tAc/tGc					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33288180	33288180	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001526-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			135	126	292	0	ENST00000374542.5:c.1228G>T	p.Glu410Ter	p.E410*	ENST00000374542	NM_001141970.1	410	Gaa/Taa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108170590	108170590	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001526-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			173	39	392	0	ENST00000278616.4:c.5155A>G	p.Asn1719Asp	p.N1719D	ENST00000278616	NM_000051.3	1719	Aat/Gat					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914394	32914394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001526-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			384	53	620	0	ENST00000380152.3:c.5902T>C	p.Ser1968Pro	p.S1968P	ENST00000380152		1968	Tca/Cca					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	1168	491	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	989	963	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31372633	31372633	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149520896		P-0005853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3351	604	872	0	ENST00000328111.2:c.274C>T	p.Arg92Trp	p.R92W	ENST00000328111	NM_006892.3	92	Cgg/Tgg					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870804	12870804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	156	295	0	ENST00000228872.4:c.31C>T	p.Pro11Ser	p.P11S	ENST00000228872	NM_004064.3	11	Cct/Tct					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29008200	29008200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	574	687	2	ENST00000282397.4:c.671G>A	p.Arg224Gln	p.R224Q	ENST00000282397	NM_002019.4	224	cGa/cAa					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1615691	1615691	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141432924		P-0005853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1396	777	1337	4	ENST00000344749.5:c.1580G>A	p.Arg527Gln	p.R527Q	ENST00000344749	NM_001136139.2	527	cGg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175419	112175420	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0005853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	705	530	0	ENST00000257430.4:c.4129_4130del	p.Val1377SerfsTer8	p.V1377Sfs*8	ENST00000257430	NM_000038.5	1376	taTGtt/tatt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	68	572	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15296442	15296442	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	87	780	0	ENST00000263388.2:c.2000G>T	p.Gly667Val	p.G667V	ENST00000263388	NM_000435.2	667	gGc/gTc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17954604	17954604	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	54	609	0	ENST00000458235.1:c.290T>C	p.Val97Ala	p.V97A	ENST00000458235	NM_000215.3	97	gTc/gCc					NEWRECORD																																																																									
MEF2B	0	MSKCC	GRCh37	19	19258525	19258525	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	98	911	0	ENST00000162023.5:c.375G>T	p.Leu125Phe	p.L125F	ENST00000162023		125	ttG/ttT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	114	249	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118165711	118165711	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	120	216	0	ENST00000369448.3:c.221C>T	p.Ser74Phe	p.S74F	ENST00000369448	NM_017709.3	74	tCc/tTc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115117315	115117315	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	114	257	0	ENST00000257566.3:c.859G>A	p.Asp287Asn	p.D287N	ENST00000257566	NM_016569.3	287	Gat/Aat					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95579539	95579539	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	94	188	0	ENST00000343455.3:c.1930G>T	p.Asp644Tyr	p.D644Y	ENST00000343455	NM_177438.2	644	Gat/Tat					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220699	1220699	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	121	249	0	ENST00000326873.7:c.717G>A	p.Trp239Ter	p.W239*	ENST00000326873	NM_000455.4	239	tgG/tgA					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600488	10600488	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	116	225	0	ENST00000171111.5:c.1367T>A	p.Met456Lys	p.M456K	ENST00000171111	NM_203500.1	456	aTg/aAg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600525	10600525	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	121	203	0	ENST00000171111.5:c.1330G>T	p.Glu444Ter	p.E444*	ENST00000171111	NM_203500.1	444	Gag/Tag					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48650785	48650785	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	137	391	0	ENST00000376670.3:c.654C>A	p.Asp218Glu	p.D218E	ENST00000376670	NM_002049.3	218	gaC/gaA					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48652358	48652358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	125	355	0	ENST00000376670.3:c.1029C>A	p.Ser343Arg	p.S343R	ENST00000376670	NM_002049.3	343	agC/agA					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339934	70339934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	158	336	0	ENST00000374080.3:c.467C>A	p.Ala156Asp	p.A156D	ENST00000374080		156	gCt/gAt					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100613615	100613615	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	132	319	0	ENST00000308731.7:c.964A>T	p.Lys322Ter	p.K322*	ENST00000308731	NM_000061.2	322	Aaa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	97	517	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	89	488	4	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306741	41306741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	52	423	0	ENST00000373198.4:c.918G>T	p.Trp306Cys	p.W306C	ENST00000373198	NM_133170.3	306	tgG/tgT					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0007678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	21	78	2	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69631129	69631129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	44	755	3	ENST00000334134.2:c.283C>T	p.Arg95Trp	p.R95W	ENST00000334134	NM_005247.2	95	Cgg/Tgg					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225339072	225339072	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	305	255	0	ENST00000264414.4:c.2197C>T	p.Arg733Ter	p.R733*	ENST00000264414	NM_003590.4	733	Cga/Tga					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11145705	11145705	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	275	443	0	ENST00000344626.4:c.4067G>A	p.Arg1356Gln	p.R1356Q	ENST00000344626	NM_003072.3	1356	cGg/cAg					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56409103	56409106	+	frameshift_variant	Frame_Shift_Del	DEL	GTAA	GTAA	-			P-0007160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	212	299	0	ENST00000348428.3:c.1612_1615del	p.Lys538ValfsTer10	p.K538Vfs*10	ENST00000348428	NM_006785.3	537	gGTAAg/gg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577032	7577032	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	207	309	0	ENST00000269305.4:c.906del	p.Ser303AlafsTer42	p.S303Afs*42	ENST00000269305	NM_001126112.2	302	ggG/gg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187549439	187549439	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	419	304	0	ENST00000441802.2:c.4679del	p.Pro1560ArgfsTer25	p.P1560Rfs*25	ENST00000441802	NM_005245.3	1560	cCg/cg					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102207519	102207521	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0007160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	253	442	0	ENST00000263464.3:c.1611_1613del	p.Glu537del	p.E537del	ENST00000263464	NM_001165.4	536	acAGAa/aca					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	196	727	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	154	695	0	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245						NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71064719	71064719	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	128	717	0	ENST00000318789.4:c.955G>C	p.Asp319His	p.D319H	ENST00000318789	NM_032682.5	319	Gat/Cat					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8486233	8486233	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	177	923	0	ENST00000356435.5:c.2584C>G	p.Arg862Gly	p.R862G	ENST00000356435		862	Cgc/Ggc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518067	8518067	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	144	831	0	ENST00000356435.5:c.1324G>T	p.Glu442Ter	p.E442*	ENST00000356435		442	Gaa/Taa					NEWRECORD																																																																									
CD79B	0	MSKCC	GRCh37	17	62007484	62007484	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	184	1229	0	ENST00000392795.3:c.383A>G	p.Asn128Ser	p.N128S	ENST00000392795	NM_001039933.1	128	aAc/aGc					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426638	47426638	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	135	1229	0	ENST00000377045.4:c.883G>T	p.Gly295Trp	p.G295W	ENST00000377045	NM_001654.4	295	Ggg/Tgg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183771	10183771	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	145	445	0	ENST00000256474.2:c.240T>G	p.Ser80Arg	p.S80R	ENST00000256474	NM_000551.3	80	agT/agG					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143129613	143129613	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	64	456	0	ENST00000262992.4:c.1037T>A	p.Leu346Gln	p.L346Q	ENST00000262992	NM_001101669.1	346	cTg/cAg					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675415	30675415	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	133	508	0	ENST00000376406.3:c.2941T>G	p.Ser981Ala	p.S981A	ENST00000376406	NM_014641.2	981	Tca/Gca					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39661099	39661099	+	stop_lost	Nonstop_Mutation	SNP	T	T	G			P-0005934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	61	532	0	ENST00000262039.4:c.2662T>G	p.Ter888GlyextTer4	p.*888Gext*4	ENST00000262039	NM_002647.2	888	Tga/Gga					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651509	52651509	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	93	500	0	ENST00000394830.3:c.1587del	p.Val530PhefsTer39	p.V530Ffs*39	ENST00000394830	NM_018313.4	529	gtT/gt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47147497	47147497	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	103	604	0	ENST00000409792.3:c.4829del	p.Lys1610ArgfsTer5	p.K1610Rfs*5	ENST00000409792	NM_014159.6	1610	aAg/ag					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111855951	111855951	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0007340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1575	252	681	0	ENST00000341259.2:c.2T>G	p.Met1?	p.M1?	ENST00000341259	NM_005475.2	1	aTg/aGg					NEWRECORD																																																																									
SRSF2	0	MSKCC	GRCh37	17	74733218	74733218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2485	181	778	2	ENST00000359995.5:c.25G>A	p.Asp9Asn	p.D9N	ENST00000359995	NM_001195427.1	9	Gat/Aat					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41572904	41572904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1335	212	623	0	ENST00000263253.7:c.5189C>A	p.Ser1730Tyr	p.S1730Y	ENST00000263253	NM_001429.3	1730	tCt/tAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	539	392	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185146540	185146540	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs139333467		P-0006996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	130	338	0	ENST00000265026.3:c.171C>G	p.Ile57Met	p.I57M	ENST00000265026	NM_004721.4	57	atC/atG					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467509	66467509	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	324	441	0	ENST00000273854.3:c.760C>A	p.Gln254Lys	p.Q254K	ENST00000273854	NM_004439.5	254	Caa/Aaa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139400005	139400005	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	148	344	1	ENST00000277541.6:c.4343C>T	p.Ala1448Val	p.A1448V	ENST00000277541	NM_017617.3	1448	gCg/gTg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9560947	9560947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	184	357	0	ENST00000353224.5:c.835C>G	p.Gln279Glu	p.Q279E	ENST00000353224	NM_177990.2	279	Cag/Gag					NEWRECORD																																																																									
SH2D1A	0	MSKCC	GRCh37	X	123504056	123504056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	293	300	1	ENST00000371139.4:c.232C>T	p.Arg78Trp	p.R78W	ENST00000371139	NM_001114937.2	78	Cgg/Tgg					NEWRECORD																																																																									
EPCAM	0	MSKCC	GRCh37	2	47606196	47606199	+	splice_region_variant,intron_variant	Splice_Region	DEL	GAGT	GAGT	-			P-0006996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	138	284	0	ENST00000263735.4:c.657+3_657+6del		p.X219_splice	ENST00000263735	NM_002354.2	219						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	233	709	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187541181	187541181	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	69	439	0	ENST00000441802.2:c.6559T>C	p.Tyr2187His	p.Y2187H	ENST00000441802	NM_005245.3	2187	Tac/Cac					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187541193	187541193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	79	493	0	ENST00000441802.2:c.6547G>A	p.Glu2183Lys	p.E2183K	ENST00000441802	NM_005245.3	2183	Gaa/Aaa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187541310	187541310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	144	618	0	ENST00000441802.2:c.6430G>A	p.Asp2144Asn	p.D2144N	ENST00000441802	NM_005245.3	2144	Gac/Aac					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1226486	1226486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	77	876	1	ENST00000326873.7:c.1142G>T	p.Gly381Val	p.G381V	ENST00000326873	NM_000455.4	381	gGa/gTa					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48650319	48650319	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	161	371	0	ENST00000376670.3:c.289G>C	p.Ala97Pro	p.A97P	ENST00000376670	NM_002049.3	97	Gcc/Ccc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187541569	187541589	+	inframe_deletion	In_Frame_Del	DEL	ATGTTCCTCTGTCACTTCTAC	ATGTTCCTCTGTCACTTCTAC	-			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	115	534	0	ENST00000441802.2:c.6151_6171del	p.Val2051_His2057del	p.V2051_H2057del	ENST00000441802	NM_005245.3	2051	GTAGAAGTGACAGAGGAACAT/-					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116411888	116411907	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCTCTGTTTTAAGATCTG	TCTCTCTGTTTTAAGATCTG	-			P-0006127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	188	334	0	ENST00000397752.3:c.2888-15_2892del		p.X963_splice	ENST00000397752	NM_000245.2	963						NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71090624	71090624	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	126	434	0	ENST00000318789.4:c.724G>T	p.Glu242Ter	p.E242*	ENST00000318789	NM_032682.5	242	Gaa/Taa					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95574366	95574366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	34	393	0	ENST00000343455.3:c.2501C>T	p.Ser834Phe	p.S834F	ENST00000343455	NM_177438.2	834	tCt/tTt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29553622	29553622	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	91	401	0	ENST00000358273.4:c.2171A>G	p.Asp724Gly	p.D724G	ENST00000358273	NM_001042492.2	724	gAt/gGt					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10291501	10291501	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	55	761	0	ENST00000340748.4:c.178C>G	p.Gln60Glu	p.Q60E	ENST00000340748		60	Cag/Gag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29497012	29497192	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGGGTAAGTTTAAATGTATAATATATCTGAAAAAAATCACTGGGTCAAAAACTAGTATCATGAATGTACTAATTATATTAATTGTGCTGAACTAGAACACCAAACTGGATTTTATAATGACATTTCCTTGTGAAATAACCAGTAATACAAATGGGTAATTATTTTTCAATCTTTGAAAAT	AAGGGTAAGTTTAAATGTATAATATATCTGAAAAAAATCACTGGGTCAAAAACTAGTATCATGAATGTACTAATTATATTAATTGTGCTGAACTAGAACACCAAACTGGATTTTATAATGACATTTCCTTGTGAAATAACCAGTAATACAAATGGGTAATTATTTTTCAATCTTTGAAAAT	-			P-0009815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	124	253	0	ENST00000358273.4:c.585_586+179del		p.X195_splice	ENST00000358273	NM_001042492.2	195						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578372	7578373	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AT	AT	C			P-0009815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	98	279	0	ENST00000269305.4:c.557_558delinsG	p.Asp186GlyfsTer61	p.D186Gfs*61	ENST00000269305	NM_001126112.2	186	gAT/gG					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	219	360	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	110	357	0	ENST00000269305.4:c.737T>C	p.Met246Thr	p.M246T	ENST00000269305	NM_001126112.2	246	aTg/aCg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	506	389	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	958	500	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224						NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220439900	220439900	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	256	519	1	ENST00000243786.2:c.753G>T	p.Arg251Ser	p.R251S	ENST00000243786	NM_002191.3	251	agG/agT					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185167708	185167708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	545	577	0	ENST00000265026.3:c.1031G>C	p.Trp344Ser	p.W344S	ENST00000265026	NM_004721.4	344	tGg/tCg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188638	32188638	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	396	377	0	ENST00000375023.3:c.817T>A	p.Cys273Ser	p.C273S	ENST00000375023	NM_004557.3	273	Tgt/Agt					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099508	157099508	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	121	267	0	ENST00000346085.5:c.445C>T	p.Gln149Ter	p.Q149*	ENST00000346085	NM_020732.3	149	Cag/Tag					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099492	157099494	+	inframe_deletion	In_Frame_Del	DEL	GGG	GGG	-			P-0008131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	130	299	0	ENST00000346085.5:c.429_431del	p.Gly146del	p.G146del	ENST00000346085	NM_020732.3	143	gcGGGc/gcc					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64127665	64127665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	175	341	2	ENST00000334205.4:c.158C>T	p.Ala53Val	p.A53V	ENST00000334205	NM_003942.2	53	gCg/gTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	100	535	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341941	8341941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	53	342	0	ENST00000356435.5:c.4699G>A	p.Asp1567Asn	p.D1567N	ENST00000356435		1567	Gat/Aat					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521739	89521739	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	41	265	0	ENST00000336596.2:c.2816C>G	p.Ser939Cys	p.S939C	ENST00000336596	NM_005233.5	939	tCt/tGt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180056402	180056402	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	50	334	0	ENST00000261937.6:c.842A>G	p.Glu281Gly	p.E281G	ENST00000261937	NM_182925.4	281	gAg/gGg					NEWRECORD																																																																									
PNRC1	0	MSKCC	GRCh37	6	89793539	89793539	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	85	309	0	ENST00000336032.3:c.608T>C	p.Ile203Thr	p.I203T	ENST00000336032	NM_006813.2	203	aTa/aCa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2984107	2984107	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	50	241	0	ENST00000396946.4:c.423G>C	p.Gln141His	p.Q141H	ENST00000396946	NM_032415.4	141	caG/caC					NEWRECORD																																																																									
FGF4	0	MSKCC	GRCh37	11	69589540	69589540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	33	123	0	ENST00000168712.1:c.313G>A	p.Gly105Ser	p.G105S	ENST00000168712	NM_002007.2	105	Ggc/Agc					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	11992208	11992208	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	77	378	0	ENST00000396373.4:c.298G>C	p.Glu100Gln	p.E100Q	ENST00000396373	NM_001987.4	100	Gag/Cag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32937380	32937380	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	56	398	0	ENST00000380152.3:c.8041A>C	p.Thr2681Pro	p.T2681P	ENST00000380152		2681	Aca/Cca					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992178	72992178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	164	684	0	ENST00000268489.5:c.1867G>T	p.Ala623Ser	p.A623S	ENST00000268489	NM_006885.3	623	Gct/Tct					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575055	48575055	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	56	358	1	ENST00000342988.3:c.250-1G>T		p.X84_splice	ENST00000342988	NM_005359.5	84						NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31024858	31024858	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	76	560	0	ENST00000375687.4:c.4343A>T	p.Gln1448Leu	p.Q1448L	ENST00000375687	NM_015338.5	1448	cAa/cTa					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765796	66765796	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	107	310	1	ENST00000374690.3:c.808G>T	p.Ala270Ser	p.A270S	ENST00000374690	NM_000044.3	270	Gcc/Tcc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89498386	89498386	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	53	377	0	ENST00000336596.2:c.2360del	p.Pro787GlnfsTer10	p.P787Qfs*10	ENST00000336596	NM_005233.5	786	atC/at					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41076932	41076932	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	109	449	0	ENST00000373198.4:c.1488delG	p.Phe498LeufsTer103	p.F498Lfs*103	ENST00000373198	NM_133170.3	496	ggG/gg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89828356	89828357	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AT			P-0009951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	43	387	0	ENST00000389301.3:c.2852_2852+1delinsAT		p.X951_splice	ENST00000389301	NM_000135.2	951						NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93979329	93979329	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	29	628	0	ENST00000369303.4:c.1499C>G	p.Ala500Gly	p.A500G	ENST00000369303	NM_004440.3	500	gCc/gGc					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4409175	4409175	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0009400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	11	288	0	ENST00000261254.3:c.870A>T	p.Ter290CysextTer13	p.*290Cext*13	ENST00000261254	NM_001759.3	290	tgA/tgT					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42793433	42793433	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	23	261	0	ENST00000575354.2:c.1235C>G	p.Ala412Gly	p.A412G	ENST00000575354	NM_015125.3	412	gCc/gGc					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45867502	45867502	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	19	384	0	ENST00000391945.4:c.806C>T	p.Thr269Met	p.T269M	ENST00000391945	NM_000400.3	269	aCg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	240	425	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176671220	176671220	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	147	611	0	ENST00000439151.2:c.4327A>C	p.Asn1443His	p.N1443H	ENST00000439151	NM_022455.4	1443	Aat/Cat					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370829	55370829	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	162	315	0	ENST00000297316.4:c.131T>G	p.Val44Gly	p.V44G	ENST00000297316	NM_022454.3	44	gTg/gGg					NEWRECORD																																																																									
RAD51D	0	MSKCC	GRCh37	17	33428365	33428365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	337	428	0	ENST00000335858.7:c.422G>A	p.Arg141Gln	p.R141Q	ENST00000335858	NM_133629.2	141	cGa/cAa					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870864	12870864	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	378	264	0	ENST00000228872.4:c.92del	p.Asn31ThrfsTer11	p.N31Tfs*11	ENST00000228872	NM_004064.3	31	Aac/ac					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	27	432	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	37	731	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692794	89692794	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	9	354	0	ENST00000371953.3:c.278A>G	p.His93Arg	p.H93R	ENST00000371953	NM_000314.4	93	cAt/cGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	9	241	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	235	326	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114903763	114903763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	298	655	1	ENST00000543371.1:c.767C>T	p.Pro256Leu	p.P256L	ENST00000543371	NM_001198531.1	256	cCg/cTg					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30325956	30325956	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	198	456	0	ENST00000322652.5:c.2154A>C	p.Lys718Asn	p.K718N	ENST00000322652	NM_015355.2	718	aaA/aaC					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175580	112175592	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGCCACCAAG	CCATGCCACCAAG	-			P-0008128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	182	392	0	ENST00000257430.4:c.4290_4302del	p.Met1431GlufsTer38	p.M1431Efs*38	ENST00000257430	NM_000038.5	1430	aCCATGCCACCAAGc/ac					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112151281	112151281	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	150	314	0	ENST00000257430.4:c.926del	p.Gly309GlufsTer27	p.G309Efs*27	ENST00000257430	NM_000038.5	308	ctG/ct					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0007967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	768	593	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98229610	98229610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	660	431	1	ENST00000331920.6:c.2348G>A	p.Arg783Gln	p.R783Q	ENST00000331920	NM_000264.3	783	cGg/cAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	282	424	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578412	7578412	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	94	286	0	ENST00000269305.4:c.518T>G	p.Val173Gly	p.V173G	ENST00000269305	NM_001126112.2	173	gTg/gGg					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30732911	30732911	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0007906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	91	255	0	ENST00000359013.4:c.1601del		p.X534_splice	ENST00000359013	NM_001024847.2	534						NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162749983	162749983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	57	328	2	ENST00000367921.3:c.2515C>T	p.Arg839Cys	p.R839C	ENST00000367921	NM_006182.2	839	Cgt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0004998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	113	219	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143130100	143130100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	97	298	0	ENST00000262992.4:c.916C>G	p.Gln306Glu	p.Q306E	ENST00000262992	NM_001101669.1	306	Caa/Gaa					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	225997	225997	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	10	54	0	ENST00000264932.6:c.457-1G>T		p.X153_splice	ENST00000264932	NM_004168.2	153						NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	128	376	0	ENST00000262367.5:c.4337G>C	p.Arg1446Pro	p.R1446P	ENST00000262367	NM_004380.2	1446	cGc/cCc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0004998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	130	442	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028662	12028662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	76	374	0	ENST00000353533.5:c.865G>T	p.Asp289Tyr	p.D289Y	ENST00000353533	NM_003010.3	289	Gat/Tat					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53227982	53227982	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	41	273	0	ENST00000375401.3:c.2332C>T	p.Arg778Ter	p.R778*	ENST00000375401	NM_004187.3	778	Cga/Tga					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29910336	29910343	+	frameshift_variant	Frame_Shift_Del	DEL	CGTCATGG	CGTCATGG	-			P-0004998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	87	354	0	ENST00000376809.5:c.8_15delTCATGGCG	p.Val3AlafsTer93	p.V3Afs*93	ENST00000376809	NM_002116.7	2	gcCGTCATGGcg/gccg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579356	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	GACG	GACG	-			P-0007127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	327	697	0	ENST00000269305.4:c.328_331delCGTC	p.Arg110TrpfsTer12	p.R110Wfs*12	ENST00000269305	NM_001126112.2	110	CGTCtg/tg					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138201288	138201288	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	125	556	1	ENST00000237289.4:c.1987G>A	p.Gly663Ser	p.G663S	ENST00000237289	NM_001270507.1	663	Ggc/Agc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2136771	2136771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	307	859	0	ENST00000219476.3:c.4888G>C	p.Val1630Leu	p.V1630L	ENST00000219476	NM_000548.3	1630	Gtg/Ctg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29587424	29587424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	61	547	0	ENST00000358273.4:c.4468G>A	p.Asp1490Asn	p.D1490N	ENST00000358273	NM_001042492.2	1490	Gat/Aat					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	98	262	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048602	180048602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	79	195	2	ENST00000261937.6:c.1960G>A	p.Glu654Lys	p.E654K	ENST00000261937	NM_182925.4	654	Gaa/Aaa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106504	27106504	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	116	449	1	ENST00000324856.7:c.6115C>T	p.Gln2039Ter	p.Q2039*	ENST00000324856	NM_006015.4	2039	Caa/Taa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162528	47162528	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	38	269	0	ENST00000409792.3:c.3598G>T	p.Glu1200Ter	p.E1200*	ENST00000409792	NM_014159.6	1200	Gaa/Taa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164943	47164943	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	43	261	0	ENST00000409792.3:c.1183A>T	p.Arg395Ter	p.R395*	ENST00000409792	NM_014159.6	395	Aga/Tga					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061406	38061406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	78	242	0	ENST00000250448.2:c.583G>A	p.Glu195Lys	p.E195K	ENST00000250448	NM_004496.3	195	Gag/Aag					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005131-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			91	339	133	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
FIP1L1	0	MSKCC	GRCh37	4	54280802	54280802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005131-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			420	225	268	0	ENST00000337488.6:c.836C>G	p.Ser279Cys	p.S279C	ENST00000337488	NM_030917.3	279	tCt/tGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005131-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			189	254	371	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057775	27057775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005131-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			810	392	534	0	ENST00000324856.7:c.1483C>G	p.His495Asp	p.H495D	ENST00000324856	NM_006015.4	495	Cat/Gat					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135782166	135782167	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	G			P-0005131-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			469	37	315	0	ENST00000298552.3:c.1389_1390delinsC	p.Leu463PhefsTer69	p.L463Ffs*69	ENST00000298552	NM_001162426.1	463	ttAGgt/ttCgt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023863	27023933	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGCCGGCAAGGGCCCGGCGGACATGGCCTCGCAGTGTTGGGGGGCTGCGGCGGCGGCAGCTGCGGCGG	GGGCGCCGGCAAGGGCCCGGCGGACATGGCCTCGCAGTGTTGGGGGGCTGCGGCGGCGGCAGCTGCGGCGG	-			P-0005131-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			175	103	137	0	ENST00000324856.7:c.969_1039del	p.Ala325ArgfsTer51	p.A325Rfs*51	ENST00000324856	NM_006015.4	323	ggGGGCGCCGGCAAGGGCCCGGCGGACATGGCCTCGCAGTGTTGGGGGGCTGCGGCGGCGGCAGCTGCGGCGGcg/ggcg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	93	397	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	105	425	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46743777	46743777	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	54	557	0	ENST00000371975.4:c.2067G>C	p.Gln689His	p.Q689H	ENST00000371975	NM_003579.3	689	caG/caC					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119779	70119779	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	149	637	0	ENST00000245479.2:c.781G>T	p.Glu261Ter	p.E261*	ENST00000245479	NM_000346.3	261	Gag/Tag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266028	41266420	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGT	GAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGT	-			P-0006778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	106	460	0	ENST00000349496.5:c.29_242-21del		p.X10_splice	ENST00000349496	NM_001904.3	10						NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	365	382	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29679366	29679366	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	421	384	1	ENST00000358273.4:c.7549C>T	p.Arg2517Ter	p.R2517*	ENST00000358273	NM_001042492.2	2517	Cga/Tga					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12627215	12627215	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2654	1218	388	0	ENST00000251849.4:c.1501C>T	p.Gln501Ter	p.Q501*	ENST00000251849	NM_002880.3	501	Cag/Tag					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55589819	55589819	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	165	419	1	ENST00000288135.5:c.1301C>A	p.Pro434Gln	p.P434Q	ENST00000288135	NM_000222.2	434	cCa/cAa					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149460585	149460585	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0007805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	203	214	2	ENST00000286301.3:c.52C>T	p.Gln18Ter	p.Q18*	ENST00000286301	NM_005211.3	18	Cag/Tag					NEWRECORD																																																																									
CD274	0	MSKCC	GRCh37	9	5465553	5465553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	563	564	0	ENST00000381577.3:c.737C>G	p.Ala246Gly	p.A246G	ENST00000381577	NM_014143.3	246	gCc/gGc					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50918210	50918210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	413	478	0	ENST00000440232.2:c.2527C>G	p.Leu843Val	p.L843V	ENST00000440232	NM_002691.3	843	Ctg/Gtg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44910953	44910953	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	640	264	0	ENST00000377967.4:c.655-1G>A		p.X219_splice	ENST00000377967	NM_021140.2	219						NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765163	66765163	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	52	99	0	ENST00000374690.3:c.175C>T	p.Gln59Ter	p.Q59*	ENST00000374690	NM_000044.3	59	Cag/Tag					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123220440	123220440	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	609	291	2	ENST00000218089.9:c.3097C>T	p.Arg1033Ter	p.R1033*	ENST00000218089	NM_001042749.1	1033	Cga/Tga					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48027861	48027861	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	363	423	0	ENST00000234420.5:c.2739del	p.Asp913GlufsTer32	p.D913Efs*32	ENST00000234420	NM_000179.2	913	gaT/ga					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30680798	30680809	+	inframe_deletion	In_Frame_Del	DEL	GCTGTCATCATC	GCTGTCATCATC	-			P-0007805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	405	456	0	ENST00000376406.3:c.910_921del	p.Asp304_Ser307del	p.D304_S307del	ENST00000376406	NM_014641.2	304	GATGATGACAGC/-					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579383	7579383	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	339	380	0	ENST00000269305.4:c.304del	p.Thr102ProfsTer21	p.T102Pfs*21	ENST00000269305	NM_001126112.2	102	Acc/cc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108178632	108178632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	34	304	0	ENST00000278616.4:c.5683C>T	p.His1895Tyr	p.H1895Y	ENST00000278616	NM_000051.3	1895	Cac/Tac					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15272413	15272413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	22	570	0	ENST00000263388.2:c.6026G>A	p.Arg2009Gln	p.R2009Q	ENST00000263388	NM_000435.2	2009	cGg/cAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	129	475	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	81	331	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119582302	119582302	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	73	426	0	ENST00000316626.5:c.1099C>T	p.Arg367Ter	p.R367*	ENST00000316626		367	Cga/Tga					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625168	69625168	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	84	489	1	ENST00000334134.2:c.625C>T	p.Arg209Ter	p.R209*	ENST00000334134	NM_005247.2	209	Cga/Tga					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765122	66765122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	118	252	0	ENST00000374690.3:c.134C>T	p.Ala45Val	p.A45V	ENST00000374690	NM_000044.3	45	gCg/gTg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188196	10188196	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0006935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	226	318	0	ENST00000256474.2:c.341-2A>G		p.X114_splice	ENST00000256474	NM_000551.3	114						NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53223788	53223789	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	291	234	0	ENST00000375401.3:c.3570_3571del	p.Cys1190TrpfsTer13	p.C1190Wfs*13	ENST00000375401	NM_004187.3	1190	tgTGgg/tggg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52598116	52598119	+	protein_altering_variant	In_Frame_Del	DEL	CTTC	CTTC	A			P-0006935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	191	420	0	ENST00000394830.3:c.3747_3750delinsT	p.Leu1249_Lys1250delinsPhe	p.L1249_K1250delinsF	ENST00000394830	NM_018313.4	1249	ttGAAG/ttT					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	33	261	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	25	194	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5223203	5223203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	22	295	0	ENST00000357368.4:c.2600G>A	p.Arg867His	p.R867H	ENST00000357368	NM_002850.3	867	cGc/cAc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	297	387	0	ENST00000288135.5:c.2466T>G	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaG					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593608	55593628	+	inframe_deletion	In_Frame_Del	DEL	GGTTGTTGAGGAGATAAATGG	GGTTGTTGAGGAGATAAATGG	-			P-0009938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	347	538	0	ENST00000288135.5:c.1674_1694del	p.Val559_Gly565del	p.V559_G565del	ENST00000288135	NM_000222.2	558	aaGGTTGTTGAGGAGATAAATGGa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	306	253	2	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189612269	189612269	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs34713855		P-0006990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	77	165	0	ENST00000264731.3:c.2021G>T	p.Arg674Leu	p.R674L	ENST00000264731	NM_003722.4	674	cGc/cTc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66361223	66361223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	255	256	0	ENST00000273854.3:c.949C>G	p.Gln317Glu	p.Q317E	ENST00000273854	NM_004439.5	317	Cag/Gag					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90993075	90993075	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	80	106	0	ENST00000265433.3:c.367T>C	p.Ser123Pro	p.S123P	ENST00000265433	NM_002485.4	123	Tct/Cct					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117878848	117878848	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1960	123	312	0	ENST00000297338.2:c.121G>C	p.Val41Leu	p.V41L	ENST00000297338	NM_006265.2	41	Gtg/Ctg					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78933911	78933911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	164	304	0	ENST00000306801.3:c.3511A>T	p.Ser1171Cys	p.S1171C	ENST00000306801	NM_020761.2	1171	Agt/Tgt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47040930	47040930	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	34	274	0	ENST00000329236.7:c.1226G>C	p.Gly409Ala	p.G409A	ENST00000329236	NM_001204466.1	409	gGg/gCg					NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56177763	56177763	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	100	254	0	ENST00000399503.3:c.2739del	p.Gly914AspfsTer7	p.G914Dfs*7	ENST00000399503	NM_005921.1	912	ggA/gg					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7989355	7989361	+	frameshift_variant	Frame_Shift_Del	DEL	GGGTCTC	GGGTCTC	-			P-0006990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	112	271	0	ENST00000319144.4:c.325_331del	p.Glu109TrpfsTer86	p.E109Wfs*86	ENST00000319144	NM_001139.2	109	GAGACCCtg/tg					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7989365	7989369	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAT	GCCAT	-			P-0006990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	105	278	0	ENST00000319144.4:c.317_321del	p.Asp106ValfsTer17	p.D106Vfs*17	ENST00000319144	NM_001139.2	106	gATGGC/g					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117861226	117861229	+	frameshift_variant	Frame_Shift_Del	DEL	TTCT	TTCT	-			P-0006990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1827	114	287	0	ENST00000297338.2:c.1660_1663del	p.Arg554AspfsTer57	p.R554Dfs*57	ENST00000297338	NM_006265.2	554	AGAAga/ga					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1362	223	342	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	669	332	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149460417	149460417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	231	355	0	ENST00000286301.3:c.220G>A	p.Ala74Thr	p.A74T	ENST00000286301	NM_005211.3	74	Gct/Act					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243800978	243800978	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	346	413	0	ENST00000263826.5:c.496C>T	p.Arg166Ter	p.R166*	ENST00000263826	NM_005465.4	166	Cga/Tga					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7119479	7119479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	237	382	1	ENST00000302850.5:c.3775G>A	p.Asp1259Asn	p.D1259N	ENST00000302850	NM_000208.2	1259	Gac/Aac					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0009291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	46	415	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99500317	99500317	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	103	589	0	ENST00000268035.6:c.3750G>C	p.Gln1250His	p.Q1250H	ENST00000268035	NM_000875.3	1250	caG/caC					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183694	10183709	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGCCGGGCGGCCGC	GAGGCCGGGCGGCCGC	-			P-0009291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	34	442	0	ENST00000256474.2:c.164_179del	p.Glu55GlyfsTer7	p.E55Gfs*7	ENST00000256474	NM_000551.3	55	GAGGCCGGGCGGCCGCgg/gg					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	109	307	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108142016	108142016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	109	262	0	ENST00000278616.4:c.2960G>A	p.Cys987Tyr	p.C987Y	ENST00000278616	NM_000051.3	987	tGt/tAt					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439206	52439206	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	157	359	1	ENST00000460680.1:c.1036del	p.Val346PhefsTer16	p.V346Ffs*16	ENST00000460680	NM_004656.3	346	Gtt/tt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	94	412	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	101	532	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112170822	112170822	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	121	667	0	ENST00000257430.4:c.1918C>T	p.Arg640Trp	p.R640W	ENST00000257430	NM_000038.5	640	Cgg/Tgg					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114799786	114799786	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0006076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	160	724	0	ENST00000543371.1:c.453T>A	p.Tyr151Ter	p.Y151*	ENST00000543371	NM_001198531.1	151	taT/taA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49438663	49438663	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	146	506	0	ENST00000301067.7:c.4827C>A	p.His1609Gln	p.H1609Q	ENST00000301067	NM_003482.3	1609	caC/caA					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37627356	37627356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	138	745	0	ENST00000447079.4:c.1271C>A	p.Pro424His	p.P424H	ENST00000447079	NM_015083.1	424	cCt/cAt					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47430385	47430385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	161	705	1	ENST00000377045.4:c.1660C>T	p.Arg554Trp	p.R554W	ENST00000377045	NM_001654.4	554	Cgg/Tgg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645300	67645300	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	135	573	0	ENST00000264010.4:c.566del	p.Pro189LeufsTer33	p.P189Lfs*33	ENST00000264010	NM_006565.3	189	Cct/ct					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584801	48584823	+	frameshift_variant	Frame_Shift_Del	DEL	TATGCCGCCCCATCCCGGACATT	TATGCCGCCCCATCCCGGACATT	-			P-0006076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	38	568	0	ENST00000342988.3:c.879_901del	p.Met294LeufsTer6	p.M294Lfs*6	ENST00000342988	NM_005359.5	293	ccTATGCCGCCCCATCCCGGACATTac/ccac					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174182	112174185	+	frameshift_variant	Frame_Shift_Del	DEL	TAAA	TAAA	-			P-0006076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	133	608	0	ENST00000257430.4:c.2893_2896del	p.Asn965ValfsTer14	p.N965Vfs*14	ENST00000257430	NM_000038.5	964	tTAAAt/tt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0002512-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			660	435	489	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2979436	2979436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002512-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			939	133	440	1	ENST00000396946.4:c.811C>T	p.Arg271Trp	p.R271W	ENST00000396946	NM_032415.4	271	Cgg/Tgg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604754	48604754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002512-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			461	113	408	0	ENST00000342988.3:c.1576G>A	p.Glu526Lys	p.E526K	ENST00000342988	NM_005359.5	526	Gaa/Aaa					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0004920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	255	307	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	645	512	2	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120527	70120527	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0004920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	223	287	0	ENST00000245479.2:c.1529G>C	p.Ter510SerextTer49	p.*510Sext*49	ENST00000245479	NM_000346.3	510	tGa/tCa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057947	27057947	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	293	352	0	ENST00000324856.7:c.1655C>G	p.Ser552Ter	p.S552*	ENST00000324856	NM_006015.4	552	tCa/tGa					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77043802	77043802	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	330	493	0	ENST00000356341.3:c.1524G>C	p.Lys508Asn	p.K508N	ENST00000356341	NM_002576.4	508	aaG/aaC					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11187857	11187857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	147	165	0	ENST00000361445.4:c.6040G>A	p.Glu2014Lys	p.E2014K	ENST00000361445	NM_004958.3	2014	Gag/Aag					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25982389	25982389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	293	388	0	ENST00000435504.4:c.901C>T	p.Gln301Ter	p.Q301*	ENST00000435504		301	Caa/Taa					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25994411	25994411	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0004920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	295	411	0	ENST00000435504.4:c.404-2A>G		p.X135_splice	ENST00000435504		135						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173992	112173992	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	183	284	1	ENST00000257430.4:c.2701C>T	p.Gln901Ter	p.Q901*	ENST00000257430	NM_000038.5	901	Cag/Tag					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117869662	117869662	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	215	633	0	ENST00000297338.2:c.532G>C	p.Glu178Gln	p.E178Q	ENST00000297338	NM_006265.2	178	Gag/Cag					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77070044	77070044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	165	319	0	ENST00000356341.3:c.496G>C	p.Glu166Gln	p.E166Q	ENST00000356341	NM_002576.4	166	Gag/Cag					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18491390	18491390	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	204	346	0	ENST00000266497.5:c.1309del	p.Ile437TyrfsTer5	p.I437Yfs*5	ENST00000266497		435	Aaa/aa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005688-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	190	478	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			285	160	346	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952086	178952086	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			555	166	363	1	ENST00000263967.3:c.3141T>A	p.His1047Gln	p.H1047Q	ENST00000263967	NM_006218.2	1047	caT/caA					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1293664	1293664	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111952055		P-0001627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			188	743	250	0	ENST00000310581.5:c.1337G>A	p.Arg446His	p.R446H	ENST00000310581	NM_198253.2	446	cGt/cAt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584497	48584497	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0001627-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			229	37	225	0	ENST00000342988.3:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000342988	NM_005359.5	224	Cag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	146	386	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	184	447	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	130	389	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55133805	55133805	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	135	532	2	ENST00000257290.5:c.1018C>T	p.Arg340Trp	p.R340W	ENST00000257290	NM_006206.4	340	Cgg/Tgg					NEWRECORD																																																																									
BCL2L11	0	MSKCC	GRCh37	2	111921774	111921774	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150291943		P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	47	450	0	ENST00000393256.3:c.563G>A	p.Arg188His	p.R188H	ENST00000393256	NM_006538.4	188	cGt/cAt					NEWRECORD																																																																									
VEGFA	0	MSKCC	GRCh37	6	43748522	43748522	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150806902		P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	235	674	4	ENST00000523873.1:c.476G>A	p.Arg159Gln	p.R159Q	ENST00000523873		159	cGg/cAg					NEWRECORD																																																																									
RHEB	0	MSKCC	GRCh37	7	151188049	151188049	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	75	643	0	ENST00000262187.5:c.104A>G	p.Tyr35Cys	p.Y35C	ENST00000262187	NM_005614.3	35	tAc/tGc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971157	21971157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	12	136	0	ENST00000361570.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000361570	NM_058195.3	123	Cgc/Tgc					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971157	21971157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	12	136	0	ENST00000361570.3:c.367C>T	p.Arg123Cys	p.R123C	ENST00000361570	NM_058195.3	123	Cgc/Tgc					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114710564	114710564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	276	735	2	ENST00000543371.1:c.49G>A	p.Glu17Lys	p.E17K	ENST00000543371	NM_001198531.1	17	Gaa/Aaa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133238173	133238173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	226	557	0	ENST00000320574.5:c.2804G>A	p.Gly935Glu	p.G935E	ENST00000320574	NM_006231.2	935	gGg/gAg					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41743921	41743921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007128-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	150	528	0	ENST00000301178.4:c.856C>A	p.Gln286Lys	p.Q286K	ENST00000301178	NM_021913.4	286	Caa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	50	439	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36937695	36937695	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	54	616	0	ENST00000361632.4:c.1043A>G	p.Asp348Gly	p.D348G	ENST00000361632		348	gAc/gGc					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72748001	72748001	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	26	732	0	ENST00000357731.5:c.176+1G>A		p.X59_splice	ENST00000357731	NM_173808.2	59						NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176012322	176012322	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	60	551	0	ENST00000367669.3:c.1612G>A	p.Val538Met	p.V538M	ENST00000367669	NM_022457.5	538	Gtg/Atg					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98215884	98215884	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	31	372	0	ENST00000331920.6:c.3325G>C	p.Gly1109Arg	p.G1109R	ENST00000331920	NM_000264.3	1109	Ggc/Cgc					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21565425	21565425	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	52	630	0	ENST00000382592.4:c.461A>C	p.Lys154Thr	p.K154T	ENST00000382592	NM_014572.2	154	aAg/aCg					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99434788	99434788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	24	424	0	ENST00000268035.6:c.875A>G	p.Asp292Gly	p.D292G	ENST00000268035	NM_000875.3	292	gAc/gGc					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99452063	99452063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	58	447	1	ENST00000268035.6:c.1397C>A	p.Thr466Lys	p.T466K	ENST00000268035	NM_000875.3	466	aCg/aAg					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3900479	3900479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	33	665	1	ENST00000262367.5:c.617C>T	p.Ala206Val	p.A206V	ENST00000262367	NM_004380.2	206	gCg/gTg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72832028	72832028	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	68	766	0	ENST00000268489.5:c.4553G>T	p.Gly1518Val	p.G1518V	ENST00000268489	NM_006885.3	1518	gGc/gTc					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18266939	18266939	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	38	148	0	ENST00000222254.8:c.250G>A	p.Ala84Thr	p.A84T	ENST00000222254	NM_005027.3	84	Gcc/Acc					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0007398-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	270	324	1	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007398-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			63	590	310	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36265239	36265239	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007398-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			698	245	406	0	ENST00000300305.3:c.80C>T	p.Pro27Leu	p.P27L	ENST00000300305		27	cCt/cTt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40735467	40735467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007398-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			512	436	429	1	ENST00000373198.4:c.3406C>T	p.Arg1136Cys	p.R1136C	ENST00000373198	NM_133170.3	1136	Cgt/Tgt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152163898	152163898	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007398-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			634	306	391	1	ENST00000206249.3:c.619G>A	p.Ala207Thr	p.A207T	ENST00000206249	NM_000125.3	207	Gcc/Acc					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371718	55371718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007398-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			177	1186	264	0	ENST00000297316.4:c.408G>C	p.Lys136Asn	p.K136N	ENST00000297316	NM_022454.3	136	aaG/aaC					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41076967	41076967	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	18	420	0	ENST00000373198.4:c.1453C>A	p.Pro485Thr	p.P485T	ENST00000373198	NM_133170.3	485	Cca/Aca					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30061040	30061040	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	78	471	0	ENST00000338641.4:c.872G>C	p.Arg291Pro	p.R291P	ENST00000338641	NM_000268.3	291	cGt/cCt					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760887	133760888	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0008814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	32	689	0	ENST00000318560.5:c.3212_3213delTG	p.Val1071GlyfsTer22	p.V1071Gfs*22	ENST00000318560	NM_005157.4	1070	taTGtg/tatg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	46	616	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	57	657	0	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12011200	12011200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	29	479	0	ENST00000353533.5:c.607G>T	p.Glu203Ter	p.E203*	ENST00000353533	NM_003010.3	203	Gaa/Taa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5212492	5212492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	42	591	0	ENST00000357368.4:c.4625G>A	p.Ser1542Asn	p.S1542N	ENST00000357368	NM_002850.3	1542	aGt/aAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578175	7578233	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	ACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAA	ACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAA	-			P-0008136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	63	762	0	ENST00000269305.4:c.616_672+2del		p.X206_splice	ENST00000269305	NM_001126112.2	206						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	47	315	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45003745	45003745	+	start_lost	Translation_Start_Site	SNP	A	A	G			P-0007408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	74	320	0	ENST00000558401.1:c.1A>G	p.Met1?	p.M1?	ENST00000558401	NM_004048.2	1	Atg/Gtg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139404399	139404399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	45	348	0	ENST00000277541.6:c.2755G>A	p.Gly919Arg	p.G919R	ENST00000277541	NM_017617.3	919	Ggg/Agg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47034441	47034441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	80	469	1	ENST00000329236.7:c.295G>A	p.Val99Ile	p.V99I	ENST00000329236	NM_001204466.1	99	Gtc/Atc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	356	418	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	259	468	2				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711911	89711911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	62	403	0	ENST00000371953.3:c.529T>G	p.Tyr177Asp	p.Y177D	ENST00000371953	NM_000314.4	177	Tat/Gat					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42794751	42794751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	131	594	0	ENST00000575354.2:c.1831C>T	p.Pro611Ser	p.P611S	ENST00000575354	NM_015125.3	611	Cca/Tca					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878307	151878308	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	212	512	0	ENST00000262189.6:c.6637_6638delinsAA	p.Gly2213Lys	p.G2213K	ENST00000262189	NM_170606.2	2213	GGa/AAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	520	387	1	ENST00000269305.4:c.919+1G>T		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851645	134851645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	318	468	0	ENST00000398015.3:c.1051C>T	p.Arg351Trp	p.R351W	ENST00000398015	NM_004441.4	351	Cgg/Tgg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41572404	41572404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	307	494	0	ENST00000263253.7:c.4933C>T	p.Arg1645Ter	p.R1645*	ENST00000263253	NM_001429.3	1645	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112111435	112111435	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	92	248	0	ENST00000257430.4:c.531+1G>T		p.X177_splice	ENST00000257430	NM_000038.5	177						NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152265561	152265561	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	186	320	0	ENST00000206249.3:c.1014T>G	p.Ser338Arg	p.S338R	ENST00000206249	NM_000125.3	338	agT/agG					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87636264	87636264	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	437	588	0	ENST00000277120.3:c.2429C>G	p.Pro810Arg	p.P810R	ENST00000277120		810	cCc/cGc					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	101981646	101981646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	43	58	0	ENST00000282441.5:c.67C>A	p.Pro23Thr	p.P23T	ENST00000282441	NM_001130145.2	23	Ccc/Acc					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944967	31944967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	363	519	0	ENST00000340398.3:c.134C>T	p.Thr45Ile	p.T45I	ENST00000340398	NM_001013699.2	45	aCc/aTc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28608074	28608074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	266	597	0	ENST00000241453.7:c.1892G>A	p.Gly631Glu	p.G631E	ENST00000241453	NM_004119.2	631	gGa/gAa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039340	49039340	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	206	391	0	ENST00000267163.4:c.2326-1G>A		p.X776_splice	ENST00000267163	NM_000321.2	776						NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41961751	41961751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	292	727	0	ENST00000219905.7:c.659G>A	p.Gly220Asp	p.G220D	ENST00000219905	NM_001164273.1	220	gGc/gAc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954211	48954211	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	181	368	0	ENST00000267163.4:c.1415del	p.Asn472IlefsTer6	p.N472Ifs*6	ENST00000267163	NM_000321.2	471	cAa/ca					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89851344	89851344	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	62	393	0	ENST00000389301.3:c.1388A>G	p.His463Arg	p.H463R	ENST00000389301	NM_000135.2	463	cAt/cGt					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54945263	54945263	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007625-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	92	272	0	ENST00000312783.6:c.1163C>G	p.Ser388Ter	p.S388*	ENST00000312783	NM_198436.1	388	tCa/tGa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	347	458	2	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	125	390	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061261	38061264	+	missense_variant	Missense_Mutation	ONP	TAGG	TAGG	GAGC			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	491	473	0	ENST00000250448.2:c.725_728delinsGCTC	p.Ser242_Tyr243delinsCysSer	p.S242_Y243delinsCS	ENST00000250448	NM_004496.3	242	tCCTAc/tGCTCc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628763	187628763	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	33	417	0	ENST00000441802.2:c.2219A>C	p.Asn740Thr	p.N740T	ENST00000441802	NM_005245.3	740	aAc/aCc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176637724	176637724	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	56	378	0	ENST00000439151.2:c.2324A>T	p.Gln775Leu	p.Q775L	ENST00000439151	NM_022455.4	775	cAa/cTa					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152382214	152382214	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	212	418	0	ENST00000206249.3:c.1324G>C	p.Gly442Arg	p.G442R	ENST00000206249	NM_000125.3	442	Gga/Cga					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575049	64575049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	214	397	1	ENST00000337652.1:c.773C>T	p.Ser258Leu	p.S258L	ENST00000337652	NM_130803.2	258	tCg/tTg					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7184583	7184583	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	61	181	0	ENST00000302850.5:c.718del	p.Leu240TrpfsTer42	p.L240Wfs*42	ENST00000302850	NM_000208.2	240	Ctg/tg					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72058631	72058631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	551	677	0	ENST00000357731.5:c.809G>A	p.Gly270Glu	p.G270E	ENST00000357731	NM_173808.2	270	gGa/gAa					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	698	311	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149899	202149899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	320	366	1	ENST00000358485.4:c.1340C>T	p.Pro447Leu	p.P447L	ENST00000358485	NM_001080125.1	447	cCt/cTt					NEWRECORD																																																																									
MST1	0	MSKCC	GRCh37	3	49725076	49725076	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	582	580	2	ENST00000449682.2:c.268C>T	p.His90Tyr	p.H90Y	ENST00000449682	NM_020998.3	90	Cat/Tat					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259262	89259262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	402	375	0	ENST00000336596.2:c.406C>T	p.Arg136Ter	p.R136*	ENST00000336596	NM_005233.5	136	Cga/Tga					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134967348	134967348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	396	348	0	ENST00000398015.3:c.2687C>T	p.Ala896Val	p.A896V	ENST00000398015	NM_004441.4	896	gCc/gTc					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106156829	106156829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	426	428	0	ENST00000380013.4:c.1730C>T	p.Ser577Phe	p.S577F	ENST00000380013	NM_001127208.2	577	tCc/tTc					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	123	118	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117658469	117658469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	200	279	0	ENST00000368508.3:c.5114C>T	p.Ser1705Leu	p.S1705L	ENST00000368508	NM_002944.2	1705	tCa/tTa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151877987	151877987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	670	298	0	ENST00000262189.6:c.6958C>T	p.His2320Tyr	p.H2320Y	ENST00000262189	NM_170606.2	2320	Cat/Tat					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151949069	151949069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	754	405	0	ENST00000262189.6:c.1576C>T	p.Arg526Cys	p.R526C	ENST00000262189	NM_170606.2	526	Cgt/Tgt					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70451525	70451525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	384	560	0	ENST00000373644.4:c.6365C>T	p.Pro2122Leu	p.P2122L	ENST00000373644	NM_030625.2	2122	cCt/cTt					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102195673	102195673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	601	816	0	ENST00000263464.3:c.433C>T	p.Pro145Ser	p.P145S	ENST00000263464	NM_001165.4	145	Cct/Tct					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28959073	28959073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	428	518	1	ENST00000282397.4:c.2065G>A	p.Glu689Lys	p.E689K	ENST00000282397	NM_002019.4	689	Gag/Aag					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81609925	81609925	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	350	332	0	ENST00000298171.2:c.1523C>T	p.Ser508Leu	p.S508L	ENST00000298171	NM_000369.2	508	tCg/tTg					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81939102	81939102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	414	641	0	ENST00000359376.3:c.1457C>T	p.Ser486Phe	p.S486F	ENST00000359376	NM_002661.3	486	tCc/tTc					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31015936	31015936	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	243	304	0	ENST00000375687.4:c.258T>A	p.Asp86Glu	p.D86E	ENST00000375687	NM_015338.5	86	gaT/gaA					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20156735	20156735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			46	400	191	0	ENST00000379607.5:c.22G>A	p.Gly8Arg	p.G8R	ENST00000379607	NM_001412.3	8	Gga/Aga					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	865	421	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	831	416	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	525	189	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971096	21971096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	525	189	0	ENST00000304494.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000304494	NM_000077.4	88	Gag/Tag					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135802688	135802688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	211	322	0	ENST00000298552.3:c.110G>A	p.Arg37His	p.R37H	ENST00000298552	NM_001162426.1	37	cGt/cAt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532741	187532741	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	249	457	0	ENST00000441802.2:c.9652G>A	p.Val3218Ile	p.V3218I	ENST00000441802	NM_005245.3	3218	Gta/Ata					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370958	55370958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	219	445	1	ENST00000297316.4:c.260C>T	p.Ala87Val	p.A87V	ENST00000297316	NM_022454.3	87	gCg/gTg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25368457	25368457	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	148	273	0	ENST00000256078.4:c.488T>G	p.Ile163Ser	p.I163S	ENST00000256078	NM_033360.2	163	aTc/aGc					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10254611	10254611	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	174	356	0	ENST00000340748.4:c.2899G>C	p.Asp967His	p.D967H	ENST00000340748		967	Gac/Cac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	35	229	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	100	295	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0006617-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	41	240	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46285572	46285572	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	239	933	1	ENST00000334344.6:c.4932G>T	p.Gln1644His	p.Q1644H	ENST00000334344	NM_152641.2	1644	caG/caT					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2115632	2115632	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	286	1163	1	ENST00000219476.3:c.1712T>C	p.Leu571Pro	p.L571P	ENST00000219476	NM_000548.3	571	cTt/cCt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0001347-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			306	160	166	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001347-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			980	428	452	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0001347-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			684	156	445	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49933214	49933214	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001347-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1520	205	609	0	ENST00000296474.3:c.2896C>G	p.Leu966Val	p.L966V	ENST00000296474	NM_002447.2	966	Ctg/Gtg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651523	52651523	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001347-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			880	77	416	0	ENST00000394830.3:c.1573A>G	p.Ile525Val	p.I525V	ENST00000394830	NM_018313.4	525	Atc/Gtc					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38978730	38978730	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0001347-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			493	261	271	0	ENST00000357387.3:c.776A>G	p.Asp259Gly	p.D259G	ENST00000357387	NM_152756.3	259	gAt/gGt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46205322	46205322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001347-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			613	51	269	0	ENST00000334344.6:c.406C>T	p.His136Tyr	p.H136Y	ENST00000334344	NM_152641.2	136	Cac/Tac					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435831	56435831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001347-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			638	239	266	0	ENST00000407977.2:c.1306C>T	p.Arg436Cys	p.R436C	ENST00000407977		436	Cgc/Tgc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175606	112175606	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0001347-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			841	191	423	0	ENST00000257430.4:c.4316del	p.Pro1439LeufsTer34	p.P1439Lfs*34	ENST00000257430	NM_000038.5	1439	Cct/ct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	106	471	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	78	390	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	95	459	1	ENST00000257430.4:c.834+1G>A		p.X278_splice	ENST00000257430	NM_000038.5	278						NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1280384	1280384	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	158	429	0	ENST00000310581.5:c.1839G>T	p.Arg613Ser	p.R613S	ENST00000310581	NM_198253.2	613	agG/agT					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114917779	114917779	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	118	449	0	ENST00000543371.1:c.1270-1G>A		p.X424_splice	ENST00000543371	NM_001198531.1	424						NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56488228	56488228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	306	452	0	ENST00000267101.3:c.1747C>T	p.Pro583Ser	p.P583S	ENST00000267101	NM_001982.3	583	Ccc/Tcc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992375	72992375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1324	218	751	0	ENST00000268489.5:c.1670C>T	p.Ser557Phe	p.S557F	ENST00000268489	NM_006885.3	557	tCc/tTc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943532	66943532	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143040492		P-0004844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	300	276	1	ENST00000374690.3:c.2612C>T	p.Ala871Val	p.A871V	ENST00000374690	NM_000044.3	871	gCg/gTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577497	7577497	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0004005-T01-IM3									Unknown	UNKNOWN				MSK-IMPACT			595	114	264	0	ENST00000269305.4:c.782+2T>G		p.X261_splice	ENST00000269305	NM_001126112.2	261						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	462	563	1	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551835	150551835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	142	177	1	ENST00000369026.2:c.172G>A	p.Gly58Ser	p.G58S	ENST00000369026	NM_021960.4	58	Ggc/Agc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2987214	2987214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	240	402	1	ENST00000396946.4:c.215G>A	p.Arg72Gln	p.R72Q	ENST00000396946	NM_032415.4	72	cGa/cAa					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43615083	43615083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	166	583	0	ENST00000355710.3:c.2497C>T	p.Arg833Cys	p.R833C	ENST00000355710	NM_020975.4	833	Cgc/Tgc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992187	72992187	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	131	736	0	ENST00000268489.5:c.1858C>T	p.His620Tyr	p.H620Y	ENST00000268489	NM_006885.3	620	Cac/Tac					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12032466	12032466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	206	320	1	ENST00000353533.5:c.902C>A	p.Ala301Asp	p.A301D	ENST00000353533	NM_003010.3	301	gCc/gAc					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0004793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	147	351	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164627	47164627	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	189	322	0	ENST00000409792.3:c.1499C>G	p.Ser500Cys	p.S500C	ENST00000409792	NM_014159.6	500	tCt/tGt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945474	151945474	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0004793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	96	211	0	ENST00000262189.6:c.2045C>G	p.Ser682Ter	p.S682*	ENST00000262189	NM_170606.2	682	tCa/tGa					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128750945	128750945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	367	273	0	ENST00000377970.2:c.482C>T	p.Ser161Leu	p.S161L	ENST00000377970	NM_002467.4	161	tCa/tTa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435775	49435775	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0004793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	259	327	0	ENST00000301067.7:c.6110-2A>G		p.X2037_splice	ENST00000301067	NM_003482.3	2037						NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42005479	42005479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	261	484	4	ENST00000219905.7:c.3215G>A	p.Arg1072His	p.R1072H	ENST00000219905	NM_001164273.1	1072	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0004793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	224	296	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005845-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			739	240	526	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3820602	3820602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005845-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			654	40	383	0	ENST00000262367.5:c.2849C>T	p.Thr950Met	p.T950M	ENST00000262367	NM_004380.2	950	aCg/aTg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937729	76937729	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005845-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			919	62	561	0	ENST00000373344.5:c.3019C>T	p.Gln1007Ter	p.Q1007*	ENST00000373344	NM_000489.3	1007	Caa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	62	330	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16001793	16001793	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0008184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	63	387	0	ENST00000268712.3:c.2708C>G	p.Ser903Ter	p.S903*	ENST00000268712	NM_006311.3	903	tCa/tGa					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128750945	128750945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	28	269	0	ENST00000377970.2:c.482C>T	p.Ser161Leu	p.S161L	ENST00000377970	NM_002467.4	161	tCa/tTa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142253951	142253951	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	38	382	0	ENST00000350721.4:c.3916A>C	p.Ser1306Arg	p.S1306R	ENST00000350721	NM_001184.3	1306	Agc/Cgc					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25982491	25982491	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	32	304	2	ENST00000435504.4:c.799G>T	p.Ala267Ser	p.A267S	ENST00000435504		267	Gct/Tct					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117710983	117710983	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	35	154	0	ENST00000368508.3:c.1289G>A	p.Gly430Asp	p.G430D	ENST00000368508	NM_002944.2	430	gGc/gAc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453150	140453150	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	61	316	0	ENST00000288602.6:c.1785T>G	p.Phe595Leu	p.F595L	ENST00000288602	NM_004333.4	595	ttT/ttG					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128751197	128751197	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	31	233	0	ENST00000377970.2:c.734C>T	p.Ser245Phe	p.S245F	ENST00000377970	NM_002467.4	245	tCc/tTc					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101907164	101907164	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	48	272	1	ENST00000374994.4:c.1124C>A	p.Thr375Lys	p.T375K	ENST00000374994	NM_004612.2	375	aCa/aAa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0007701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	21	412	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	2376	560	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	188	572	2	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg					NEWRECORD																																																																									
SDHC	0	MSKCC	GRCh37	1	161293455	161293455	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	64	446	0	ENST00000367975.2:c.72C>G	p.Ile24Met	p.I24M	ENST00000367975	NM_003001.3	24	atC/atG					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212615430	212615430	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	68	495	0	ENST00000342788.4:c.557-1G>T		p.X186_splice	ENST00000342788	NM_005235.2	186						NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189590660	189590660	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	53	425	0	ENST00000264731.3:c.1225G>C	p.Glu409Gln	p.E409Q	ENST00000264731	NM_003722.4	409	Gag/Cag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108165783	108165783	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	54	444	0	ENST00000278616.4:c.4906C>G	p.Gln1636Glu	p.Q1636E	ENST00000278616	NM_000051.3	1636	Cag/Gag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	280	383	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242794899	242794899	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	25	374	1	ENST00000334409.5:c.310C>A	p.Arg104Ser	p.R104S	ENST00000334409	NM_005018.2	104	Cgt/Agt					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94180384	94180384	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	66	345	0	ENST00000323929.3:c.1783+1G>T		p.X595_splice	ENST00000323929	NM_005591.3	595						NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444486	49444486	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	63	213	0	ENST00000301067.7:c.2885G>T	p.Gly962Val	p.G962V	ENST00000301067	NM_003482.3	962	gGt/gTt					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59760727	59760727	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	105	516	0	ENST00000259008.2:c.3680A>T	p.His1227Leu	p.H1227L	ENST00000259008	NM_032043.2	1227	cAt/cTt					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15298770	15298770	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	34	362	0	ENST00000263388.2:c.1528G>T	p.Glu510Ter	p.E510*	ENST00000263388	NM_000435.2	510	Gaa/Taa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70344011	70344011	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	58	273	0	ENST00000374080.3:c.1747G>T	p.Asp583Tyr	p.D583Y	ENST00000374080		583	Gac/Tac					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190670474	190670475	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0007345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	34	349	0	ENST00000441310.2:c.412_413delinsT	p.Gly138PhefsTer6	p.G138Ffs*6	ENST00000441310	NM_000534.4	138	GGt/Tt					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0004874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	154	434	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47147578	47147578	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	108	229	0	ENST00000409792.3:c.4748T>G	p.Val1583Gly	p.V1583G	ENST00000409792	NM_014159.6	1583	gTa/gGa					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675450	30675450	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	164	371	0	ENST00000376406.3:c.2906C>G	p.Pro969Arg	p.P969R	ENST00000376406	NM_014641.2	969	cCt/cGt					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2951931	2951931	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	62	268	0	ENST00000396946.4:c.3020-1G>A		p.X1007_splice	ENST00000396946	NM_032415.4	1007						NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64573234	64573234	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	187	357	0	ENST00000337652.1:c.1073A>G	p.Tyr358Cys	p.Y358C	ENST00000337652	NM_130803.2	358	tAc/tGc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41100980	41100980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	244	406	0	ENST00000373198.4:c.1376G>A	p.Arg459Gln	p.R459Q	ENST00000373198	NM_133170.3	459	cGg/cAg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624297	89624297	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	172	262	0	ENST00000371953.3:c.71A>G	p.Asp24Gly	p.D24G	ENST00000371953	NM_000314.4	24	gAc/gGc					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110250365	110250365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	535	823	0	ENST00000374672.4:c.310G>T	p.Asp104Tyr	p.D104Y	ENST00000374672	NM_004235.4	104	Gac/Tac					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104359255	104359255	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	99	576	0	ENST00000369902.3:c.976C>T	p.Pro326Ser	p.P326S	ENST00000369902	NM_016169.3	326	Cca/Tca					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133218426	133218426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	51	350	0	ENST00000320574.5:c.5185C>A	p.Leu1729Met	p.L1729M	ENST00000320574	NM_006231.2	1729	Ctg/Atg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15983722	15983722	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	129	226	1	ENST00000268712.3:c.3400G>A	p.Gly1134Ser	p.G1134S	ENST00000268712	NM_006311.3	1134	Ggt/Agt					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10246474	10246474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	50	558	0	ENST00000340748.4:c.4663C>T	p.Arg1555Cys	p.R1555C	ENST00000340748		1555	Cgc/Tgc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70357233	70357233	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	22	420	0	ENST00000374080.3:c.5748G>C	p.Gln1916His	p.Q1916H	ENST00000374080		1916	caG/caC					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591118	67591245	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCCAGCTGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTC	ATCCAGCTGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTC	-			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	103	353	1	ENST00000274335.5:c.1712_1746-2del		p.X571_splice	ENST00000274335		571						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577003	7577039	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGG	TGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGG	-			P-0005735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	227	379	0	ENST00000269305.4:c.899_919+16del		p.X300_splice	ENST00000269305	NM_001126112.2	300						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0005799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	201	566	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46727002	46727002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	109	829	1	ENST00000371975.4:c.836G>T	p.Arg279Leu	p.R279L	ENST00000371975	NM_003579.3	279	cGc/cTc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142268994	142268994	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	75	625	1	ENST00000350721.4:c.2956G>A	p.Asp986Asn	p.D986N	ENST00000350721	NM_001184.3	986	Gat/Aat					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29550585	29550585	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	110	423	0	ENST00000358273.4:c.1845G>T	p.Lys615Asn	p.K615N	ENST00000358273	NM_001042492.2	615	aaG/aaT					NEWRECORD																																																																									
CALR	0	MSKCC	GRCh37	19	13054675	13054686	+	inframe_deletion	In_Frame_Del	DEL	AGGAGGAAGATG	AGGAGGAAGATG	-			P-0005799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1717	112	1386	0	ENST00000316448.5:c.1214_1225delAGGAGGAAGATG	p.Glu405_Asp408del	p.E405_D408del	ENST00000316448	NM_004343.3	401	aAGGAGGAAGATGag/aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	376	338	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120612013	120612014	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0008848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	10	40	2	ENST00000256646.2:c.7_8delinsTT	p.Ala3Phe	p.A3F	ENST00000256646	NM_024408.3	3	GCc/TTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	261	193	1	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52584491	52584491	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	439	393	0	ENST00000394830.3:c.4522G>C	p.Glu1508Gln	p.E1508Q	ENST00000394830	NM_018313.4	1508	Gaa/Caa					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128204938	128204938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	1022	466	0	ENST00000341105.2:c.503C>A	p.Ser168Tyr	p.S168Y	ENST00000341105	NM_032638.4	168	tCc/tAc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151900045	151900045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008848-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	501	408	0	ENST00000262189.6:c.4066G>C	p.Glu1356Gln	p.E1356Q	ENST00000262189	NM_170606.2	1356	Gaa/Caa					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003946-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			324	145	397	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056437	26056437	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003946-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			756	75	321	0	ENST00000343677.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000343677	NM_005319.3	74	Gag/Cag					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442015	52442015	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003946-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			331	338	421	0	ENST00000460680.1:c.334del	p.Leu112Ter	p.L112*	ENST00000460680	NM_004656.3	112	Ctg/tg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	187	186	0	ENST00000288135.5:c.1669T>C	p.Trp557Arg	p.W557R	ENST00000288135	NM_000222.2	557	Tgg/Cgg					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0006293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	17	62	0	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg					NEWRECORD																																																																									
RAD51	0	MSKCC	GRCh37	15	41023254	41023254	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0006293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	237	249	1	ENST00000267868.3:c.898T>A	p.Leu300Met	p.L300M	ENST00000267868	NM_002875.4	300	Ttg/Atg					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339769	116340321	+	frameshift_variant	Frame_Shift_Del	DEL	TTGCATTCGATATCAGTGAGAAGGCTAAAGGAAACGAAAGATGGTTTTATGTTTTTGACGGACCAGTCCTACATTGATGTTTTACCTGAGTTCAGAGATTCTTACCCCATTAAGTATGTCCATGCCTTTGAAAGCAACAATTTTATTTACTTCTTGACGGTCCAAAGGGAAACTCTAGATGCTCAGACTTTTCACACAAGAATAATCAGGTTCTGTTCCATAAACTCTGGATTGCATTCCTACATGGAAATGCCTCTGGAGTGTATTCTCACAGAAAAGAGAAAAAAGAGATCCACAAAGAAGGAAGTGTTTAATATACTTCAGGCTGCGTATGTCAGCAAGCCTGGGGCCCAGCTTGCTAGACAAATAGGAGCCAGCCTGAATGATGACATTCTTTTCGGGGTGTTCGCACAAAGCAAGCCAGATTCTGCCGAACCAATGGATCGATCTGCCATGTGTGCATTCCCTATCAAATATGTCAACGACTTCTTCAACAAGATCGTCAACAAAAACAATGTGAGATGTCTCCAGCATTTTTACGGACCCAATCATG	TTGCATTCGATATCAGTGAGAAGGCTAAAGGAAACGAAAGATGGTTTTATGTTTTTGACGGACCAGTCCTACATTGATGTTTTACCTGAGTTCAGAGATTCTTACCCCATTAAGTATGTCCATGCCTTTGAAAGCAACAATTTTATTTACTTCTTGACGGTCCAAAGGGAAACTCTAGATGCTCAGACTTTTCACACAAGAATAATCAGGTTCTGTTCCATAAACTCTGGATTGCATTCCTACATGGAAATGCCTCTGGAGTGTATTCTCACAGAAAAGAGAAAAAAGAGATCCACAAAGAAGGAAGTGTTTAATATACTTCAGGCTGCGTATGTCAGCAAGCCTGGGGCCCAGCTTGCTAGACAAATAGGAGCCAGCCTGAATGATGACATTCTTTTCGGGGTGTTCGCACAAAGCAAGCCAGATTCTGCCGAACCAATGGATCGATCTGCCATGTGTGCATTCCCTATCAAATATGTCAACGACTTCTTCAACAAGATCGTCAACAAAAACAATGTGAGATGTCTCCAGCATTTTTACGGACCCAATCATG	-			P-0006293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	77	249	0	ENST00000397752.3:c.631_1183del	p.Leu211SerfsTer9	p.L211Sfs*9	ENST00000397752	NM_000245.2	211	TTGCATTCGATATCAGTGAGAAGGCTAAAGGAAACGAAAGATGGTTTTATGTTTTTGACGGACCAGTCCTACATTGATGTTTTACCTGAGTTCAGAGATTCTTACCCCATTAAGTATGTCCATGCCTTTGAAAGCAACAATTTTATTTACTTCTTGACGGTCCAAAGGGAAACTCTAGATGCTCAGACTTTTCACACAAGAATAATCAGGTTCTGTTCCATAAACTCTGGATTGCATTCCTACATGGAAATGCCTCTGGAGTGTATTCTCACAGAAAAGAGAAAAAAGAGATCCACAAAGAAGGAAGTGTTTAATATACTTCAGGCTGCGTATGTCAGCAAGCCTGGGGCCCAGCTTGCTAGACAAATAGGAGCCAGCCTGAATGATGACATTCTTTTCGGGGTGTTCGCACAAAGCAAGCCAGATTCTGCCGAACCAATGGATCGATCTGCCATGTGTGCATTCCCTATCAAATATGTCAACGACTTCTTCAACAAGATCGTCAACAAAAACAATGTGAGATGTCTCCAGCATTTTTACGGACCCAATCATGag/ag					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544718	65544718	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	26	202	0	ENST00000358664.4:c.208del	p.Tyr70IlefsTer100	p.Y70Ifs*100	ENST00000358664	NM_002382.4	70	Tat/at					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	65	399	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0009265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	55	358	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73346338	73346338	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	77	450	1	ENST00000377767.4:c.1462G>T	p.Asp488Tyr	p.D488Y	ENST00000377767	NM_014953.3	488	Gat/Tat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	51	466	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0008754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1113	74	569	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38272143	38272143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	42	387	0	ENST00000425967.3:c.2075G>A	p.Arg692Gln	p.R692Q	ENST00000425967	NM_001174067.1	692	cGa/cAa					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4409101	4409101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	67	469	0	ENST00000261254.3:c.796C>T	p.Arg266Cys	p.R266C	ENST00000261254	NM_001759.3	266	Cgt/Tgt					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42795794	42795794	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	65	511	0	ENST00000575354.2:c.2786del	p.Pro929LeufsTer17	p.P929Lfs*17	ENST00000575354	NM_015125.3	928	gCc/gc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52598082	52598082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	55	427	0	ENST00000394830.3:c.3784G>A	p.Glu1262Lys	p.E1262K	ENST00000394830	NM_018313.4	1262	Gaa/Aaa					NEWRECORD																																																																									
PMAIP1	0	MSKCC	GRCh37	18	57567456	57567456	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	98	449	0	ENST00000316660.6:c.47G>A	p.Arg16Gln	p.R16Q	ENST00000316660	NM_021127.2	16	cGg/cAg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266105	41266619	+	splice_acceptor_variant,splice_donor_variant,stop_lost,protein_altering_variant,intron_variant	Splice_Site	DEL	AATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTT	AATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTT	-			P-0005202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	54	440	0	ENST00000349496.5:c.102_416del		p.X34_splice	ENST00000349496	NM_001904.3	34	ggAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTGTATAATAGTTTAAATAAAATGTTGTGGTGAAGAAAAGAGAGTAATAGCAATGTCACTTTTACCATTTAGGATAGCAAATACTTAGGTAAATGCTGAACTGTGGATAGTGAGTGTTGAATTAACCTTTTCCAGATATTGATGGACAGTATGCAATGACTCGAGCTCAGAGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTg/ggg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44950048	44950048	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005202-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	79	250	0	ENST00000377967.4:c.3817del	p.Leu1273PhefsTer19	p.L1273Ffs*19	ENST00000377967	NM_021140.2	1273	Ctt/tt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	223	510	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30057302	30057302	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	125	344	0	ENST00000338641.4:c.784C>T	p.Arg262Ter	p.R262*	ENST00000338641	NM_000268.3	262	Cga/Tga					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29654634	29654634	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	58	452	0	ENST00000358273.4:c.5386G>T	p.Glu1796Ter	p.E1796*	ENST00000358273	NM_001042492.2	1796	Gag/Tag					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	80	366	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188197	10188197	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	241	527	0	ENST00000256474.2:c.341-1G>T		p.X114_splice	ENST00000256474	NM_000551.3	114						NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436305	52436305	+	stop_lost	Nonstop_Mutation	SNP	C	C	A			P-0009018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	171	573	0	ENST00000460680.1:c.2189G>T	p.Ter730LeuextTer205	p.*730Lext*205	ENST00000460680	NM_004656.3	730	tGa/tTa					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55972101	55972101	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	87	481	0	ENST00000263923.4:c.1543A>G	p.Ser515Gly	p.S515G	ENST00000263923	NM_002253.2	515	Agt/Ggt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	208	619	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0007588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	47	225	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89390120	89390120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	116	468	0	ENST00000336596.2:c.869G>T	p.Cys290Phe	p.C290F	ENST00000336596	NM_005233.5	290	tGc/tTc					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59763431	59763431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	99	444	0	ENST00000259008.2:c.2671G>C	p.Val891Leu	p.V891L	ENST00000259008	NM_032043.2	891	Gtt/Ctt					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45374941	45374941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	156	498	0	ENST00000262160.6:c.902G>A	p.Gly301Asp	p.G301D	ENST00000262160	NM_005901.5	301	gGc/gAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0006744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	349	368	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0006744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	124	255	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88472663	88472663	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	70	261	0	ENST00000360948.2:c.1892C>A	p.Ala631Asp	p.A631D	ENST00000360948	NM_001012338.2	631	gCc/gAc					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89352556	89352556	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	79	509	0	ENST00000301030.4:c.783G>C	p.Gln261His	p.Q261H	ENST00000301030	NM_001256183.1	261	caG/caC					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58740840	58740840	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149137187		P-0006744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1691	278	722	0	ENST00000305921.3:c.1745G>A	p.Arg582His	p.R582H	ENST00000305921	NM_003620.3	582	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173451	112173451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006744-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	326	396	2	ENST00000257430.4:c.2162del	p.Gly721GlufsTer6	p.G721Efs*6	ENST00000257430	NM_000038.5	720	atG/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	456	340	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151879390	151879390	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	198	489	0	ENST00000262189.6:c.5555C>G	p.Ala1852Gly	p.A1852G	ENST00000262189	NM_170606.2	1852	gCt/gGt					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123258042	123258042	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	80	569	0	ENST00000358487.5:c.1639A>G	p.Ile547Val	p.I547V	ENST00000358487	NM_000141.4	547	Atc/Gtc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42005581	42005581	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	200	775	0	ENST00000219905.7:c.3317G>C	p.Arg1106Pro	p.R1106P	ENST00000219905	NM_001164273.1	1106	cGa/cCa					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	53	199	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	98	444	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65307229	65307229	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	37	419	0	ENST00000342505.4:c.2459T>A	p.Leu820Gln	p.L820Q	ENST00000342505	NM_002227.2	820	cTg/cAg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52637669	52637669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	42	463	1	ENST00000394830.3:c.2647G>A	p.Gly883Arg	p.G883R	ENST00000394830	NM_018313.4	883	Gga/Aga					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52678785	52678785	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	48	353	0	ENST00000394830.3:c.834A>C	p.Lys278Asn	p.K278N	ENST00000394830	NM_018313.4	278	aaA/aaC					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55968544	55968544	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	53	435	0	ENST00000263923.4:c.2119C>A	p.Leu707Ile	p.L707I	ENST00000263923	NM_002253.2	707	Ctt/Att					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93956546	93956546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	66	585	4	ENST00000369303.4:c.2690C>A	p.Pro897Gln	p.P897Q	ENST00000369303	NM_004440.3	897	cCa/cAa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412628	139412628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	91	313	1	ENST00000277541.6:c.1216G>A	p.Gly406Ser	p.G406S	ENST00000277541	NM_017617.3	406	Ggc/Agc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2111872	2111872	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0007388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	26	353	0	ENST00000219476.3:c.1120A>T	p.Thr374Ser	p.T374S	ENST00000219476	NM_000548.3	374	Acc/Tcc					NEWRECORD																																																																									
BCL2	0	MSKCC	GRCh37	18	60985836	60985836	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	50	405	0	ENST00000333681.4:c.64A>T	p.Lys22Ter	p.K22*	ENST00000333681		22	Aag/Tag					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100613645	100613645	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	43	499	0	ENST00000308731.7:c.934G>C	p.Ala312Pro	p.A312P	ENST00000308731	NM_000061.2	312	Gct/Cct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579411	7579441	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCAGGAGGGGGCTGGTGCAGGGGCCGCC	GGGCCAGGAGGGGGCTGGTGCAGGGGCCGCC	-			P-0007388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	58	289	0	ENST00000269305.4:c.246_276del	p.Ala83CysfsTer30	p.A83Cfs*30	ENST00000269305	NM_001126112.2	82	ccGGCGGCCCCTGCACCAGCCCCCTCCTGGCCC/cc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004046-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			456	209	281	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11189893	11189893	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0004046-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			454	206	243	0	ENST00000361445.4:c.5616T>G	p.Asp1872Glu	p.D1872E	ENST00000361445	NM_004958.3	1872	gaT/gaG					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625126	69625126	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004046-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			576	61	321	0	ENST00000334134.2:c.667T>C	p.Ser223Pro	p.S223P	ENST00000334134	NM_005247.2	223	Tct/Cct					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30311657	30311657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004046-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			20718	5761	269	2	ENST00000262643.3:c.511G>A	p.Asp171Asn	p.D171N	ENST00000262643	NM_001238.2	171	Gat/Aat					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30312715	30312715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004046-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			19419	5841	294	0	ENST00000262643.3:c.696G>A	p.Met232Ile	p.M232I	ENST00000262643	NM_001238.2	232	atG/atA					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30313493	30313493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004046-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			22187	6860	446	1	ENST00000262643.3:c.1093G>A	p.Asp365Asn	p.D365N	ENST00000262643	NM_001238.2	365	Gac/Aac					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8485959	8485959	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004046-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			684	93	439	0	ENST00000356435.5:c.2858A>G	p.Lys953Arg	p.K953R	ENST00000356435		953	aAg/aGg					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30313373	30313375	+	missense_variant	Missense_Mutation	ONP	GAG	GAG	AAA			P-0004046-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			26274	5358	498	0	ENST00000262643.3:c.973_975delGAGinsAAA	p.Glu325Lys	p.E325K	ENST00000262643	NM_001238.2	325	GAG/AAA					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440916	52440916	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	160	424	0	ENST00000460680.1:c.588G>A	p.Trp196Ter	p.W196*	ENST00000460680	NM_004656.3	196	tgG/tgA					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15288883	15288883	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	104	258	0	ENST00000263388.2:c.3856T>A	p.Cys1286Ser	p.C1286S	ENST00000263388	NM_000435.2	1286	Tgc/Agc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52443746	52443746	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	154	356	0	ENST00000460680.1:c.51del	p.Leu18SerfsTer54	p.L18Sfs*54	ENST00000460680	NM_004656.3	17	ctG/ct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	2109	448	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	90	172	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CCND1	595	MSKCC	GRCh37	11	69466019	69466019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	295	561	0	ENST00000227507.2:c.857C>T	p.Thr286Ile	p.T286I	ENST00000227507	NM_053056.2	286	aCa/aTa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29004199	29004199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	171	454	1	ENST00000282397.4:c.1094C>T	p.Pro365Leu	p.P365L	ENST00000282397	NM_002019.4	365	cCg/cTg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72829671	72829671	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1380	461	802	1	ENST00000268489.5:c.6910C>T	p.Gln2304Ter	p.Q2304*	ENST00000268489	NM_006885.3	2304	Cag/Tag					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44950108	44950121	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGTAAGTCTTTTC	AAGTAAGTCTTTTC	-			P-0005364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	263	512	0	ENST00000377967.4:c.3877_3878+12del		p.X1293_splice	ENST00000377967	NM_021140.2	1293						NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0007910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	422	613	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	196	608	3	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	197	512	0	ENST00000288135.5:c.2466T>G	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaG					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435168	56435168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	118	283	1	ENST00000407977.2:c.1969C>T	p.Arg657Trp	p.R657W	ENST00000407977		657	Cgg/Tgg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	455	522	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589561	67589585	+	frameshift_variant	Frame_Shift_Del	DEL	ATTGAAGCTGTAGGGAAAAAATTAC	ATTGAAGCTGTAGGGAAAAAATTAC	-			P-0007872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	84	432	0	ENST00000274335.5:c.1326_1350del	p.Ile442MetfsTer30	p.I442Mfs*30	ENST00000274335		442	ATTGAAGCTGTAGGGAAAAAATTACat/at					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005935-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	25	351	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597452	10597452	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	167	491	0	ENST00000171111.5:c.1751A>G	p.Tyr584Cys	p.Y584C	ENST00000171111	NM_203500.1	584	tAc/tGc					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248700	59248700	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	156	467	0	ENST00000371222.2:c.43A>G	p.Asn15Asp	p.N15D	ENST00000371222	NM_002228.3	15	Aac/Gac					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78414881	78414881	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	59	456	0	ENST00000370768.2:c.1885A>G	p.Thr629Ala	p.T629A	ENST00000370768	NM_003902.3	629	Aca/Gca					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67588167	67588167	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	92	272	0	ENST00000274335.5:c.997T>C	p.Trp333Arg	p.W333R	ENST00000274335		333	Tgg/Cgg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857011	9857011	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	302	565	0	ENST00000330684.3:c.4390G>A	p.Val1464Ile	p.V1464I	ENST00000330684	NM_001134407.1	1464	Gtt/Att					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	198	395	1	ENST00000269305.4:c.707A>C	p.Tyr236Ser	p.Y236S	ENST00000269305	NM_001126112.2	236	tAc/tCc					NEWRECORD																																																																									
SOX2	6657	MSKCC	GRCh37	3	181430202	181430202	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	34	98	0	ENST00000325404.1:c.59del	p.Gly20AlafsTer26	p.G20Afs*26	ENST00000325404	NM_003106.3	18	tcG/tc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	84	201	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577126	7577126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	405	500	0	ENST00000269305.4:c.812A>T	p.Glu271Val	p.E271V	ENST00000269305	NM_001126112.2	271	gAg/gTg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711969	89711978	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAGATGAT	ACAAGATGAT	-			P-0009934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	213	282	0	ENST00000371953.3:c.587_596del	p.His196ArgfsTer22	p.H196Rfs*22	ENST00000371953	NM_000314.4	196	cACAAGATGATg/cg					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86659201	86659210	+	stop_gained	Nonsense_Mutation	DEL	TAGAGGGTAG	TAGAGGGTAG	AAGT			P-0009934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	90	434	0	ENST00000274376.6:c.1490_1499delinsAAGT	p.Leu497_Ser500delinsTer	p.L497_S500delins*	ENST00000274376	NM_002890.2	497	tTAGAGGGTAGt/tAAGTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	8	221	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89349618	89349618	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	71	756	0	ENST00000301030.4:c.3332A>G	p.Lys1111Arg	p.K1111R	ENST00000301030	NM_001256183.1	1111	aAa/aGa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	38	392	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88576096	88576096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	47	569	1	ENST00000360948.2:c.1577C>A	p.Pro526Gln	p.P526Q	ENST00000360948	NM_001012338.2	526	cCg/cAg					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71161741	71161741	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	81	582	2	ENST00000318789.4:c.228G>T	p.Gln76His	p.Q76H	ENST00000318789	NM_032682.5	76	caG/caT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006403-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	25	842	1	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0009490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	351	306	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33289678	33289678	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	66	229	0	ENST00000374542.5:c.25G>T	p.Val9Leu	p.V9L	ENST00000374542	NM_001141970.1	9	Gtg/Ttg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0005700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	114	540	1	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	114	559	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600417	10600417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	164	695	1	ENST00000171111.5:c.1438G>T	p.Gly480Trp	p.G480W	ENST00000171111	NM_203500.1	480	Ggg/Tgg					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25458647	25458647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	104	617	0	ENST00000264709.3:c.2526G>T	p.Gln842His	p.Q842H	ENST00000264709	NM_175629.2	842	caG/caT					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49448470	49448470	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	120	562	0	ENST00000301067.7:c.241G>T	p.Glu81Ter	p.E81*	ENST00000301067	NM_003482.3	81	Gag/Tag					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220428	1220428	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	138	700	0	ENST00000326873.7:c.521A>T	p.His174Leu	p.H174L	ENST00000326873	NM_000455.4	174	cAc/cTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	467	420	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100998600	100998600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	131	394	0	ENST00000325455.5:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000325455	NM_001202474.3	401	cCg/cTg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15299908	15299908	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	246	413	0	ENST00000263388.2:c.1270A>G	p.Thr424Ala	p.T424A	ENST00000263388	NM_000435.2	424	Act/Gct					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593587	55593598	+	inframe_deletion	In_Frame_Del	DEL	CATGTATGAAGT	CATGTATGAAGT	-			P-0007374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	87	557	0	ENST00000288135.5:c.1653_1664del	p.Met552_Val555del	p.M552_V555del	ENST00000288135	NM_000222.2	551	ccCATGTATGAAGTa/cca					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20156731	20156731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	612	758	1	ENST00000379607.5:c.26G>T	p.Gly9Val	p.G9V	ENST00000379607	NM_001412.3	9	gGt/gTt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27092813	27092814	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0008354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	345	699	0	ENST00000324856.7:c.2834_2835del	p.Gly945AlafsTer61	p.G945Afs*61	ENST00000324856	NM_006015.4	945	gGA/g					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	235	320	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717770	89717770	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	95	125	0	ENST00000371953.3:c.800del	p.Lys267ArgfsTer9	p.K267Rfs*9	ENST00000371953	NM_000314.4	265	ctA/ct					NEWRECORD																																																																									
TBX3	6926	MSKCC	GRCh37	12	115112154	115112154	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	105	455	4	ENST00000257566.3:c.1586del	p.Gly529AlafsTer103	p.G529Afs*103	ENST00000257566	NM_016569.3	529	gGc/gc					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481660	56481660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	115	468	0	ENST00000267101.3:c.695C>T	p.Ala232Val	p.A232V	ENST00000267101	NM_001982.3	232	gCc/gTc					NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	22	93	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt					NEWRECORD																																																																									
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	67	271	0	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac					NEWRECORD																																																																									
SOX17	64321	MSKCC	GRCh37	8	55372288	55372288	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1319573268		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	62	234	0	ENST00000297316.4:c.983del	p.Pro328ArgfsTer59	p.P328Rfs*59	ENST00000297316	NM_022454.3	326	caC/ca					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176638491	176638491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	97	361	0	ENST00000439151.2:c.3091C>T	p.Arg1031Ter	p.R1031*	ENST00000439151	NM_022455.4	1031	Cga/Tga					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287520	33287520	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141395832		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	48	228	0	ENST00000374542.5:c.1577G>A	p.Arg526His	p.R526H	ENST00000374542	NM_001141970.1	526	cGc/cAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	32	280	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156834552	156834552	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	81	434	2	ENST00000524377.1:c.320C>T	p.Ala107Val	p.A107V	ENST00000524377	NM_002529.3	107	gCg/gTg					NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5231611	5231611	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs755108907		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	15	65	0	ENST00000357368.4:c.1865del	p.Pro622LeufsTer16	p.P622Lfs*16	ENST00000357368	NM_002850.3	622	cCt/ct					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333266	70333266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	57	417	0	ENST00000373644.4:c.1171G>A	p.Glu391Lys	p.E391K	ENST00000373644	NM_030625.2	391	Gag/Aag					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26032045	26032045	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	165	826	0	ENST00000244661.2:c.244G>C	p.Asp82His	p.D82H	ENST00000244661	NM_003537.3	82	Gat/Cat					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8073525	8073525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	133	700	0	ENST00000377482.5:c.1134C>A	p.Cys378Ter	p.C378*	ENST00000377482	NM_018948.3	378	tgC/tgA					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9777020	9777020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	103	431	0	ENST00000377346.4:c.784A>G	p.Ile262Val	p.I262V	ENST00000377346	NM_005026.3	262	Atc/Gtc					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46715676	46715676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	112	381	0	ENST00000371975.4:c.95C>A	p.Pro32His	p.P32H	ENST00000371975	NM_003579.3	32	cCt/cAt					NEWRECORD																																																																									
CDKN2C	0	MSKCC	GRCh37	1	51439853	51439853	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	36	100	0	ENST00000262662.1:c.418G>A	p.Ala140Thr	p.A140T	ENST00000262662		140	Gcc/Acc					NEWRECORD																																																																									
BCL2L11	0	MSKCC	GRCh37	2	111907654	111907654	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs141962978		P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	107	460	0	ENST00000393256.3:c.428G>A	p.Arg143His	p.R143H	ENST00000393256	NM_006538.4	143	cGc/cAc					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190719073	190719073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	97	191	2	ENST00000441310.2:c.1075G>A	p.Val359Ile	p.V359I	ENST00000441310	NM_000534.4	359	Gtt/Att					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30691881	30691881	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	62	277	1	ENST00000359013.4:c.458A>G	p.Lys153Arg	p.K153R	ENST00000359013	NM_001024847.2	153	aAg/aGg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162317	47162317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	70	244	1	ENST00000409792.3:c.3809C>T	p.Thr1270Met	p.T1270M	ENST00000409792	NM_014159.6	1270	aCg/aTg					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69928374	69928374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	105	301	0	ENST00000352241.4:c.194G>A	p.Arg65His	p.R65H	ENST00000352241	NM_198159.2	65	cGt/cAt					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134967276	134967276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	100	404	0	ENST00000398015.3:c.2615C>T	p.Ala872Val	p.A872V	ENST00000398015	NM_004441.4	872	gCg/gTg					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106158313	106158313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	113	375	0	ENST00000380013.4:c.3214G>A	p.Ala1072Thr	p.A1072T	ENST00000380013	NM_001127208.2	1072	Gca/Aca					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38963022	38963022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	97	269	1	ENST00000357387.3:c.1522C>T	p.Arg508Trp	p.R508W	ENST00000357387	NM_152756.3	508	Cgg/Tgg					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67590986	67590986	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	58	146	0	ENST00000274335.5:c.1579A>G	p.Asn527Asp	p.N527D	ENST00000274335		527	Aat/Gat					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467700	50467700	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	80	415	0	ENST00000331340.3:c.935A>G	p.Asp312Gly	p.D312G	ENST00000331340	NM_006060.4	312	gAc/gGc					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98239932	98239932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	86	263	0	ENST00000331920.6:c.1400G>A	p.Gly467Asp	p.G467D	ENST00000331920	NM_000264.3	467	gGt/gAt					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900273	101900273	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	60	362	0	ENST00000374994.4:c.707C>A	p.Ser236Tyr	p.S236Y	ENST00000374994	NM_004612.2	236	tCt/tAt					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135801065	135801065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	75	427	1	ENST00000298552.3:c.272C>T	p.Ser91Leu	p.S91L	ENST00000298552	NM_001162426.1	91	tCg/tTg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412238	139412238	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	38	494	1	ENST00000277541.6:c.1407C>G	p.Asp469Glu	p.D469E	ENST00000277541	NM_017617.3	469	gaC/gaG					NEWRECORD																																																																									
EGFL7	0	MSKCC	GRCh37	9	139564426	139564426	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	32	341	1	ENST00000308874.7:c.374G>A	p.Cys125Tyr	p.C125Y	ENST00000308874		125	tGc/tAc					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	464407	464407	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	69	266	0	ENST00000399788.2:c.787A>C	p.Thr263Pro	p.T263P	ENST00000399788	NM_001042603.1	263	Acc/Ccc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425796	49425796	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	67	211	0	ENST00000301067.7:c.12692T>G	p.Leu4231Arg	p.L4231R	ENST00000301067	NM_003482.3	4231	cTg/cGg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32915013	32915013	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	134	646	0	ENST00000380152.3:c.6521T>G	p.Val2174Gly	p.V2174G	ENST00000380152		2174	gTt/gGt					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73336137	73336137	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	140	388	2	ENST00000377767.4:c.2266T>C	p.Ser756Pro	p.S756P	ENST00000377767	NM_014953.3	756	Tct/Cct					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435010	110435010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	13	143	0	ENST00000375856.3:c.3391C>T	p.Arg1131Cys	p.R1131C	ENST00000375856	NM_003749.2	1131	Cgc/Tgc					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99491810	99491810	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	40	370	1	ENST00000268035.6:c.3595G>A	p.Gly1199Arg	p.G1199R	ENST00000268035	NM_000875.3	1199	Ggg/Agg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10032245	10032245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	36	299	0	ENST00000330684.3:c.578A>G	p.Asn193Ser	p.N193S	ENST00000330684	NM_001134407.1	193	aAc/aGc					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23641370	23641370	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	85	676	0	ENST00000261584.4:c.2105T>C	p.Ile702Thr	p.I702T	ENST00000261584	NM_024675.3	702	aTa/aCa					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993653	72993653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	126	645	1	ENST00000268489.5:c.392G>T	p.Gly131Val	p.G131V	ENST00000268489	NM_006885.3	131	gGg/gTg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89348128	89348128	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	80	950	1	ENST00000301030.4:c.4822A>T	p.Met1608Leu	p.M1608L	ENST00000301030	NM_001256183.1	1608	Atg/Ttg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89348580	89348580	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	54	1083	0	ENST00000301030.4:c.4370A>T	p.Lys1457Ile	p.K1457I	ENST00000301030	NM_001256183.1	1457	aAa/aTa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15938195	15938195	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	116	485	0	ENST00000268712.3:c.7019C>A	p.Pro2340His	p.P2340H	ENST00000268712	NM_006311.3	2340	cCt/cAt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29676141	29676141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	14	197	0	ENST00000358273.4:c.7193A>G	p.Tyr2398Cys	p.Y2398C	ENST00000358273	NM_001042492.2	2398	tAc/tGc					NEWRECORD																																																																									
RAD51D	0	MSKCC	GRCh37	17	33428299	33428299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	104	387	1	ENST00000335858.7:c.488G>A	p.Arg163Gln	p.R163Q	ENST00000335858	NM_133629.2	163	cGg/cAg					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618703	37618703	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	140	568	0	ENST00000447079.4:c.379C>T	p.Gln127Ter	p.Q127*	ENST00000447079	NM_015083.1	127	Cag/Tag					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37687283	37687283	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	33	397	1	ENST00000447079.4:c.4187A>G	p.Gln1396Arg	p.Q1396R	ENST00000447079	NM_015083.1	1396	cAg/cGg					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40376865	40376865	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	98	637	0	ENST00000293328.3:c.307A>G	p.Met103Val	p.M103V	ENST00000293328	NM_012448.3	103	Atg/Gtg					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41223087	41223087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	102	484	0	ENST00000357654.3:c.4844C>T	p.Ala1615Val	p.A1615V	ENST00000357654	NM_007294.3	1615	gCt/gTt					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1619371	1619371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	149	546	1	ENST00000344749.5:c.1270G>A	p.Ala424Thr	p.A424T	ENST00000344749	NM_001136139.2	424	Gcg/Acg					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2217034	2217034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	101	456	0	ENST00000398665.3:c.2489C>T	p.Pro830Leu	p.P830L	ENST00000398665	NM_032482.2	830	cCg/cTg					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10265274	10265274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	81	317	0	ENST00000340748.4:c.1772C>T	p.Thr591Met	p.T591M	ENST00000340748		591	aCg/aTg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15291890	15291890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	78	403	0	ENST00000263388.2:c.2876G>A	p.Cys959Tyr	p.C959Y	ENST00000263388	NM_000435.2	959	tGc/tAc					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36012773	36012773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	21	267	1	ENST00000358208.4:c.217G>A	p.Val73Ile	p.V73I	ENST00000358208		73	Gtc/Atc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41573608	41573608	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	76	370	0	ENST00000263253.7:c.5893A>G	p.Met1965Val	p.M1965V	ENST00000263253	NM_001429.3	1965	Atg/Gtg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41574133	41574133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	131	307	0	ENST00000263253.7:c.6418G>A	p.Val2140Ile	p.V2140I	ENST00000263253	NM_001429.3	2140	Gtt/Att					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46256341	46256341	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	91	619	0	ENST00000371998.3:c.574del	p.Ser192AlafsTer9	p.S192Afs*9	ENST00000371998		190	cAa/ca					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591259	67591259	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	37	313	0	ENST00000274335.5:c.1761delA	p.Gly588ValfsTer7	p.G588Vfs*7	ENST00000274335		586	cAa/ca					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39930282	39930282	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	131	354	0	ENST00000378444.4:c.3182del	p.Lys1061SerfsTer52	p.K1061Sfs*52	ENST00000378444	NM_001123385.1	1061	aAg/ag					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29012359	29012359	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	97	308	0	ENST00000282397.4:c.512del	p.Lys171SerfsTer7	p.K171Sfs*7	ENST00000282397	NM_002019.4	171	aAg/ag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32907421	32907421	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	92	277	3	ENST00000380152.3:c.1813delA	p.Ile605TyrfsTer9	p.I605Yfs*9	ENST00000380152		602	ggA/gg					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12038923	12038925	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	101	351	0	ENST00000396373.4:c.1218_1220del	p.Ile407del	p.I407del	ENST00000396373	NM_001987.4	406	ATT/-					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8073616	8073616	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	122	681	0	ENST00000377482.5:c.1043del	p.Pro348ArgfsTer104	p.P348Rfs*104	ENST00000377482	NM_018948.3	348	cCg/cg					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131924551	131924551	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	96	321	0	ENST00000265335.6:c.1228del	p.Thr410LeufsTer5	p.T410Lfs*5	ENST00000265335		408	gcA/gc					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41203123	41203123	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	67	276	0	ENST00000357654.3:c.5289del	p.Leu1764Ter	p.L1764*	ENST00000357654	NM_007294.3	1763	ggG/gg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241679	55241681	+	inframe_deletion	In_Frame_Del	DEL	AAC	AAC	-			P-0006606-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			652	789	800	0	ENST00000275493.2:c.2127_2129del	p.Glu709_Thr710delinsAsp	p.E709_T710delinsD	ENST00000275493	NM_005228.3	709	gaAACt/gat					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185183564	185183564	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006606-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			657	144	781	0	ENST00000265026.3:c.1418A>G	p.Glu473Gly	p.E473G	ENST00000265026	NM_004721.4	473	gAg/gGg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141565	11141565	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006606-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			598	133	772	0	ENST00000344626.4:c.3542A>G	p.His1181Arg	p.H1181R	ENST00000344626	NM_003072.3	1181	cAc/cGc					NEWRECORD																																																																									
RAD51B	0	MSKCC	GRCh37	14	68353834	68353834	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006606-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			707	157	736	0	ENST00000487270.1:c.669A>T	p.Gln223His	p.Q223H	ENST00000487270	NM_133509.3	223	caA/caT					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	53	451	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163431	47163431	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	44	259	0	ENST00000409792.3:c.2695A>T	p.Lys899Ter	p.K899*	ENST00000409792	NM_014159.6	899	Aaa/Taa					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78414839	78414839	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	28	255	0	ENST00000370768.2:c.1926+1G>A		p.X642_splice	ENST00000370768	NM_003902.3	642						NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156830761	156830761	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	13	53	0	ENST00000524377.1:c.35G>A	p.Trp12Ter	p.W12*	ENST00000524377	NM_002529.3	12	tGg/tAg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191562	10191562	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	91	373	2	ENST00000256474.2:c.555C>A	p.Tyr185Ter	p.Y185*	ENST00000256474	NM_000551.3	185	taC/taA					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55984906	55984906	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	47	320	0	ENST00000263923.4:c.223G>T	p.Glu75Ter	p.E75*	ENST00000263923	NM_002253.2	75	Gag/Tag					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508315	106508315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	19	111	0	ENST00000359195.3:c.309G>T	p.Lys103Asn	p.K103N	ENST00000359195	NM_002649.2	103	aaG/aaT					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37883692	37883692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	142	449	2	ENST00000269571.5:c.3304C>T	p.Pro1102Ser	p.P1102S	ENST00000269571		1102	Ccc/Tcc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52443757	52443778	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCCTGGGTGGGGCGACAAGAG	GGCCTGGGTGGGGCGACAAGAG	-			P-0007310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	45	248	0	ENST00000460680.1:c.38-19_40del		p.X13_splice	ENST00000460680	NM_004656.3	13						NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16235857	16235857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005626-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			501	84	454	0	ENST00000375759.3:c.923G>C	p.Arg308Pro	p.R308P	ENST00000375759	NM_015001.2	308	cGa/cCa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593590	55593595	+	inframe_deletion	In_Frame_Del	DEL	GTATGA	GTATGA	-			P-0005626-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			867	469	584	0	ENST00000288135.5:c.1656_1661del	p.Met552_Glu554delinsIle	p.M552_E554delinsI	ENST00000288135	NM_000222.2	552	atGTATGAa/ata					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003925-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			136	133	273	2	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66213922	66213922	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0003925-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			737	108	432	0	ENST00000273854.3:c.2509-1G>T		p.X837_splice	ENST00000273854	NM_004439.5	837						NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68857382	68857382	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003925-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			319	129	366	0	ENST00000261769.5:c.2017C>T	p.Gln673Ter	p.Q673*	ENST00000261769	NM_004360.3	673	Cag/Tag					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70351422	70351422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003925-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			185	414	335	2	ENST00000374080.3:c.4070G>A	p.Arg1357His	p.R1357H	ENST00000374080		1357	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	471	527	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138664819	138664819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	67	66	2	ENST00000330315.3:c.746C>A	p.Ala249Glu	p.A249E	ENST00000330315	NM_023067.3	249	gCg/gAg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187627732	187627732	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	597	527	0	ENST00000441802.2:c.3250A>G	p.Ile1084Val	p.I1084V	ENST00000441802	NM_005245.3	1084	Ata/Gta					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86628340	86628340	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	375	365	0	ENST00000274376.6:c.709G>T	p.Gly237Ter	p.G237*	ENST00000274376	NM_002890.2	237	Gga/Tga					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339890	116339890	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	592	505	0	ENST00000397752.3:c.752A>C	p.His251Pro	p.H251P	ENST00000397752	NM_000245.2	251	cAt/cCt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76889069	76889069	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	237	516	0	ENST00000373344.5:c.4941T>A	p.Asp1647Glu	p.D1647E	ENST00000373344	NM_000489.3	1647	gaT/gaA					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49050846	49050846	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	230	247	0	ENST00000267163.4:c.2531del	p.Lys844SerfsTer5	p.K844Sfs*5	ENST00000267163	NM_000321.2	844	Aag/ag					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	97	244	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0007220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	205	375	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9543605	9543605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	165	414	0	ENST00000353224.5:c.1549G>A	p.Asp517Asn	p.D517N	ENST00000353224	NM_177990.2	517	Gat/Aat					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41133979	41133979	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149675484		P-0007220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1333	95	597	3	ENST00000379561.5:c.1649C>T	p.Ser550Leu	p.S550L	ENST00000379561	NM_002015.3	550	tCg/tTg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106024	27106024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	44	217	0	ENST00000324856.7:c.5635C>T	p.Arg1879Trp	p.R1879W	ENST00000324856	NM_006015.4	1879	Cgg/Tgg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120468004	120468004	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	91	457	1	ENST00000256646.2:c.4435C>T	p.Gln1479Ter	p.Q1479*	ENST00000256646	NM_024408.3	1479	Cag/Tag					NEWRECORD																																																																									
GATA2	2624	MSKCC	GRCh37	3	128199873	128199873	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs780263343		P-0007220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	51	284	1	ENST00000341105.2:c.1432G>A	p.Ala478Thr	p.A478T	ENST00000341105	NM_032638.4	478	Gcc/Acc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55963852	55963852	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	77	392	0	ENST00000263923.4:c.2591C>G	p.Thr864Arg	p.T864R	ENST00000263923	NM_002253.2	864	aCa/aGa					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38959301	38959301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	121	343	0	ENST00000357387.3:c.2174C>T	p.Thr725Ile	p.T725I	ENST00000357387	NM_152756.3	725	aCt/aTt					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106197061	106197119	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGATGCTTCCAGCTCTTAACCATGATAGAACTGCTTGTGTCCAAGGAGGCTTACACA	AAAGATGCTTCCAGCTCTTAACCATGATAGAACTGCTTGTGTCCAAGGAGGCTTACACA	-			P-0007220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	110	290	0	ENST00000380013.4:c.5396_5454del	p.Lys1799IlefsTer3	p.K1799Ifs*3	ENST00000380013	NM_001127208.2	1798	tcAAAGATGCTTCCAGCTCTTAACCATGATAGAACTGCTTGTGTCCAAGGAGGCTTACACAaa/tcaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578500	7578524	+	frameshift_variant	Frame_Shift_Del	DEL	GCACAGGGCAGGTCTTGGCCAGTTG	GCACAGGGCAGGTCTTGGCCAGTTG	-			P-0007220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	128	433	0	ENST00000269305.4:c.406_430del	p.Gln136SerfsTer26	p.Q136Sfs*26	ENST00000269305	NM_001126112.2	136	CAACTGGCCAAGACCTGCCCTGTGCag/ag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	49	402	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15974899	15974899	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	42	616	1	ENST00000268712.3:c.3976C>T	p.Arg1326Ter	p.R1326*	ENST00000268712	NM_006311.3	1326	Cga/Tga					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15841213	15841213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	160	397	1	ENST00000307771.7:c.1297C>T	p.Arg433Cys	p.R433C	ENST00000307771	NM_005089.3	433	Cgc/Tgc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	129	292	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441204	52441204	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	103	499	0	ENST00000460680.1:c.566A>T	p.Tyr189Phe	p.Y189F	ENST00000460680	NM_004656.3	189	tAc/tTc					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870837	12870837	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	84	323	0	ENST00000228872.4:c.64G>T	p.Glu22Ter	p.E22*	ENST00000228872	NM_004064.3	22	Gag/Tag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56178466	56178473	+	frameshift_variant	Frame_Shift_Del	DEL	GTAACTTT	GTAACTTT	A			P-0006067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	105	605	0	ENST00000399503.3:c.3439_3446delinsA	p.Val1147IlefsTer23	p.V1147Ifs*23	ENST00000399503	NM_005921.1	1147	GTAACTTTt/At					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	133	357	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175419	112175419	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	218	337	0	ENST00000257430.4:c.4128T>A	p.Tyr1376Ter	p.Y1376*	ENST00000257430	NM_000038.5	1376	taT/taA					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153244139	153244139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	164	461	0	ENST00000281708.4:c.2018G>C	p.Trp673Ser	p.W673S	ENST00000281708	NM_033632.3	673	tGg/tCg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108128333	108128333	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	85	267	0	ENST00000278616.4:c.2376G>C	p.Lys792Asn	p.K792N	ENST00000278616	NM_000051.3	792	aaG/aaC					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108216531	108216531	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs28942101		P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	145	513	0	ENST00000278616.4:c.8480T>G	p.Phe2827Cys	p.F2827C	ENST00000278616	NM_000051.3	2827	tTt/tGt					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39772564	39772564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	62	286	0	ENST00000288319.7:c.677G>A	p.Gly226Asp	p.G226D	ENST00000288319	NM_182918.3	226	gGt/gAt					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15354072	15354080	+	inframe_deletion	In_Frame_Del	DEL	CTGCAGCTG	CTGCAGCTG	-			P-0009163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	44	131	0	ENST00000263377.2:c.2800_2808del	p.Gln934_Gln936del	p.Q934_Q936del	ENST00000263377	NM_058243.2	934	CAGCTGCAG/-					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9783259	9783259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	134	651	3	ENST00000377346.4:c.2503G>A	p.Ala835Thr	p.A835T	ENST00000377346	NM_005026.3	835	Gcc/Acc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692919	89692919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	16	388	0	ENST00000371953.3:c.403A>G	p.Ile135Val	p.I135V	ENST00000371953	NM_000314.4	135	Ata/Gta					NEWRECORD																																																																									
HIST1H3F	0	MSKCC	GRCh37	6	26250793	26250793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1843	153	1274	0	ENST00000446824.2:c.41G>C	p.Gly14Ala	p.G14A	ENST00000446824	NM_021018.2	14	gGc/gCc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115712	8115875	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCG	CCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCG	-			P-0005602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	78	801	0	ENST00000346208.3:c.1062_1225del	p.Thr355GlnfsTer97	p.T355Qfs*97	ENST00000346208		353	cCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGTGCAAAAAAGTGCATGACTCACTGGAGGACTTCCCCAAGAACAGCTCGTTTAACCCGGCCGCCCTCTCCAGACACATGTCCTCCCTGAGCCACATCTCG/c					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	272	386	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	55	404	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1314	401	576	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578250	7578250	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	124	507	0	ENST00000269305.4:c.599delA	p.Asn200IlefsTer47	p.N200Ifs*47	ENST00000269305	NM_001126112.2	200	aAt/at					NEWRECORD																																																																									
BCL2L11	0	MSKCC	GRCh37	2	111921808	111921808	+	stop_lost	Nonstop_Mutation	SNP	A	A	T			P-0009661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	49	344	0	ENST00000393256.3:c.597A>T	p.Ter199CysextTer70	p.*199Cext*70	ENST00000393256	NM_006538.4	199	tgA/tgT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	13	649	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70361160	70361160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	46	441	0	ENST00000374080.3:c.6348C>A	p.His2116Gln	p.H2116Q	ENST00000374080		2116	caC/caA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	65	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	18	586	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0008435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	8	428	1	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89390102	89390102	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	13	448	0	ENST00000336596.2:c.851A>C	p.Asn284Thr	p.N284T	ENST00000336596	NM_005233.5	284	aAt/aCt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857789	9857789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	26	720	3	ENST00000330684.3:c.3612C>A	p.Ser1204Arg	p.S1204R	ENST00000330684	NM_001134407.1	1204	agC/agA					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	23	201	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0007545-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	153	422	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436809	52436809	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	344	514	1	ENST00000460680.1:c.1969A>T	p.Arg657Trp	p.R657W	ENST00000460680	NM_004656.3	657	Agg/Tgg					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	401731	401731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	220	301	0	ENST00000380956.4:c.1053G>C	p.Glu351Asp	p.E351D	ENST00000380956	NM_001195286.1	351	gaG/gaC					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2112996	2112996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	247	330	0	ENST00000219476.3:c.1385G>A	p.Arg462His	p.R462H	ENST00000219476	NM_000548.3	462	cGc/cAc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29663810	29663810	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	312	420	0	ENST00000358273.4:c.6305A>C	p.Tyr2102Ser	p.Y2102S	ENST00000358273	NM_001042492.2	2102	tAc/tCc					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46740384	46740632	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGTCTGTAAGGATGGTGATAGTAGTCATAGTAGGGGTGGGTCATGGAACGAGATCTTCAGGACCATCTTGTTCCTTAGTGCCTCTCTTTGGCCTTTCTGCCTCTAGCAGTAGCCAAGCTATGGGCCCAGAAGTGAGTCTTTTATTCTTCTGTTCTCCCTCCCCTTCTCTCCACCCCATTCCCTCAAACCATTCTTACTGTGCCATCTGGACACCTGTTCAGTACATCCTTTTCACAGGACACCTGCTT	CTGTCTGTAAGGATGGTGATAGTAGTCATAGTAGGGGTGGGTCATGGAACGAGATCTTCAGGACCATCTTGTTCCTTAGTGCCTCTCTTTGGCCTTTCTGCCTCTAGCAGTAGCCAAGCTATGGGCCCAGAAGTGAGTCTTTTATTCTTCTGTTCTCCCTCCCCTTCTCTCCACCCCATTCCCTCAAACCATTCTTACTGTGCCATCTGGACACCTGTTCAGTACATCCTTTTCACAGGACACCTGCTT	-			P-0009853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	158	323	0	ENST00000371975.4:c.1865_1869+244del		p.X622_splice	ENST00000371975	NM_003579.3	622						NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44969448	44969450	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0009853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	358	271	0	ENST00000377967.4:c.4131_4133delGTA	p.Gln1377_Tyr1378delinsHis	p.Q1377_Y1378delinsH	ENST00000377967	NM_021140.2	1377	cAGTac/cac					NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0006701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	182	304	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0006701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	68	229	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0006701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	243	405	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32166812	32166812	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	80	344	0	ENST00000375023.3:c.4426C>T	p.Arg1476Ter	p.R1476*	ENST00000375023	NM_004557.3	1476	Cga/Tga					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32171645	32171645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	193	296	0	ENST00000375023.3:c.3133G>A	p.Val1045Met	p.V1045M	ENST00000375023	NM_004557.3	1045	Gtg/Atg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	36	187	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0009316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	51	108	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47699360	47699360	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	91	411	0	ENST00000347630.2:c.148G>A	p.Glu50Lys	p.E50K	ENST00000347630	NM_001007230.1	50	Gaa/Aaa					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372518	55372518	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	146	301	1	ENST00000297316.4:c.1208G>T	p.Ser403Ile	p.S403I	ENST00000297316	NM_022454.3	403	aGc/aTc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	90	340	0	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101387	27101394	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTCTGC	CCCTCTGC	-			P-0009316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	116	308	0	ENST00000324856.7:c.4673_4680delCTGCCCCT	p.Ser1558CysfsTer11	p.S1558Cfs*11	ENST00000324856	NM_006015.4	1557	CCCTCTGCc/c					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602692	10602692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	173	333	0	ENST00000171111.5:c.886C>T	p.Arg296Cys	p.R296C	ENST00000171111	NM_203500.1	296	Cgc/Tgc					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158630626	158630626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	117	508	0	ENST00000263640.3:c.617G>A	p.Arg206His	p.R206H	ENST00000263640	NM_001105.4	206	cGc/cAc					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741533	145741533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	174	388	0	ENST00000428558.2:c.970C>T	p.Pro324Ser	p.P324S	ENST00000428558	NM_004260.3	324	Ccc/Tcc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112440	115112440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	113	237	0	ENST00000257566.3:c.1300G>A	p.Asp434Asn	p.D434N	ENST00000257566	NM_016569.3	434	Gac/Aac					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86564698	86564698	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	94	310	1	ENST00000274376.6:c.434del	p.Pro145LeufsTer29	p.P145Lfs*29	ENST00000274376	NM_002890.2	144	Ccc/cc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057649	27057649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			566	408	615	0	ENST00000324856.7:c.1357C>T	p.Pro453Ser	p.P453S	ENST00000324856	NM_006015.4	453	Cct/Tct					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156837973	156837973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			641	285	631	1	ENST00000524377.1:c.506G>A	p.Gly169Glu	p.G169E	ENST00000524377	NM_002529.3	169	gGa/gAa					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156849110	156849110	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			468	481	693	0	ENST00000524377.1:c.2002G>A	p.Asp668Asn	p.D668N	ENST00000524377	NM_002529.3	668	Gat/Aat					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			211	308	477	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55968136	55968136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			472	183	589	1	ENST00000263923.4:c.2194G>A	p.Glu732Lys	p.E732K	ENST00000263923	NM_002253.2	732	Gaa/Aaa					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			235	123	343	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176721094	176721094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			264	113	347	0	ENST00000439151.2:c.6725G>A	p.Gly2242Glu	p.G2242E	ENST00000439151	NM_022455.4	2242	gGa/gAa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467732	50467732	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			968	125	539	0	ENST00000331340.3:c.967G>T	p.Gly323Trp	p.G323W	ENST00000331340	NM_006060.4	323	Ggg/Tgg					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148515023	148515023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			561	167	619	0	ENST00000320356.2:c.1186G>A	p.Glu396Lys	p.E396K	ENST00000320356	NM_004456.4	396	Gag/Aag					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	37015115	37015115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			355	302	568	1	ENST00000358127.4:c.289G>A	p.Glu97Lys	p.E97K	ENST00000358127	NM_001280556.1	97	Gaa/Aaa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412642	139412642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			106	429	581	0	ENST00000277541.6:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000277541	NM_017617.3	401	cCc/cTc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711914	89711914	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			98	293	405	0	ENST00000371953.3:c.532T>C	p.Tyr178His	p.Y178H	ENST00000371953	NM_000314.4	178	Tat/Cat					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711935	89711935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			91	276	369	0	ENST00000371953.3:c.553C>T	p.His185Tyr	p.H185Y	ENST00000371953	NM_000314.4	185	Cat/Tat					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575044	64575044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			480	381	463	0	ENST00000337652.1:c.778G>A	p.Glu260Lys	p.E260K	ENST00000337652	NM_130803.2	260	Gag/Aag					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94211948	94211949	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			482	262	489	0	ENST00000323929.3:c.496_497delinsTT	p.Pro166Leu	p.P166L	ENST00000323929	NM_005591.3	166	CCg/TTg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118376322	118376322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			641	429	864	0	ENST00000534358.1:c.9715C>T	p.Pro3239Ser	p.P3239S	ENST00000534358	NM_005933.3	3239	Ccc/Tcc					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18715777	18715777	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			286	343	503	2	ENST00000266497.5:c.3608G>A	p.Arg1203Lys	p.R1203K	ENST00000266497		1203	aGg/aAg					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58145338	58145338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			345	440	478	1	ENST00000257904.6:c.163C>T	p.Arg55Cys	p.R55C	ENST00000257904	NM_000075.3	55	Cgt/Tgt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9984848	9984848	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			289	221	547	1	ENST00000330684.3:c.1117G>A	p.Glu373Lys	p.E373K	ENST00000330684	NM_001134407.1	373	Gaa/Aaa					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4110584	4110584	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			475	419	542	0	ENST00000262948.5:c.373T>A	p.Cys125Ser	p.C125S	ENST00000262948	NM_030662.3	125	Tgc/Agc					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546620	9546620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			470	310	579	1	ENST00000353224.5:c.1402G>A	p.Glu468Lys	p.E468K	ENST00000353224	NM_177990.2	468	Gag/Aag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31024038	31024038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			409	392	562	1	ENST00000375687.4:c.3523G>A	p.Glu1175Lys	p.E1175K	ENST00000375687	NM_015338.5	1175	Gag/Aag					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40748443	40748443	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	136	647	0	ENST00000392038.2:c.439G>A	p.Val147Met	p.V147M	ENST00000392038	NM_001626.4	147	Gtg/Atg					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116411874	116411902	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	ACAAGCTCTTTCTTTCTCTCTGTTTTAAG	ACAAGCTCTTTCTTTCTCTCTGTTTTAAG	-			P-0009742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	153	246	0	ENST00000397752.3:c.2888-28_2888del		p.X963_splice	ENST00000397752	NM_000245.2	963						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0005223-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	205	472	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	482	276	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0006493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	354	392	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162742015	162742015	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	269	645	0	ENST00000367921.3:c.1706T>G	p.Leu569Arg	p.L569R	ENST00000367921	NM_006182.2	569	cTg/cGg					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25523012	25523012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	328	706	0	ENST00000264709.3:c.173C>T	p.Pro58Leu	p.P58L	ENST00000264709	NM_175629.2	58	cCc/cTc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176722099	176722099	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	200	468	0	ENST00000439151.2:c.7730T>G	p.Val2577Gly	p.V2577G	ENST00000439151	NM_022455.4	2577	gTg/gGg					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114925649	114925649	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	954	1127	1	ENST00000543371.1:c.1727C>A	p.Ser576Ter	p.S576*	ENST00000543371	NM_001198531.1	576	tCg/tAg					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2161426	2161426	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	277	749	0	ENST00000434045.2:c.101T>C	p.Ile34Thr	p.I34T	ENST00000434045	NM_001127598.1	34	aTa/aCa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88476412	88476412	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006493-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	446	295	0	ENST00000360948.2:c.1720C>G	p.Leu574Val	p.L574V	ENST00000360948	NM_001012338.2	574	Ctg/Gtg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	121	361	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	88	294	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18499710	18499710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	37	280	0	ENST00000266497.5:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000266497		522	cCt/cTt					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139405654	139405654	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	57	218	0	ENST00000277541.6:c.2537A>C	p.Gln846Pro	p.Q846P	ENST00000277541	NM_017617.3	846	cAa/cCa					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15298776	15298776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	87	333	1	ENST00000263388.2:c.1522G>A	p.Val508Met	p.V508M	ENST00000263388	NM_000435.2	508	Gtg/Atg					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41759587	41759587	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006616-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	46	395	0	ENST00000301178.4:c.2010C>G	p.His670Gln	p.H670Q	ENST00000301178	NM_021913.4	670	caC/caG					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241665841	241665841	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs149787922		P-0007506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	377	375	0	ENST00000366560.3:c.1138A>G	p.Met380Val	p.M380V	ENST00000366560	NM_000143.3	380	Atg/Gtg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162729671	162729671	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	244	416	0	ENST00000367921.3:c.757G>A	p.Gly253Ser	p.G253S	ENST00000367921	NM_006182.2	253	Ggc/Agc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599333	55599333	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	806	373	0	ENST00000288135.5:c.2459A>T	p.Asp820Val	p.D820V	ENST00000288135	NM_000222.2	820	gAt/gTt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11190585	11190585	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0005066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	266	389	1	ENST00000361445.4:c.5613+1G>T		p.X1871_splice	ENST00000361445	NM_004958.3	1871						NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593606	55593614	+	protein_altering_variant	In_Frame_Del	DEL	AAGGTTGTT	AAGGTTGTT	TTG			P-0005066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	794	444	0	ENST00000288135.5:c.1672_1680delinsTTG	p.Lys558_Val560delinsLeu	p.K558_V560delinsL	ENST00000288135	NM_000222.2	558	AAGGTTGTT/TTG					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173494	112173494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	43	332	0	ENST00000257430.4:c.2203G>C	p.Ala735Pro	p.A735P	ENST00000257430	NM_000038.5	735	Gcg/Ccg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	185	299	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	489	575	2	ENST00000269305.4:c.614A>C	p.Tyr205Ser	p.Y205S	ENST00000269305	NM_001126112.2	205	tAt/tCt					NEWRECORD																																																																									
CALR	0	MSKCC	GRCh37	19	13054378	13054378	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1835	140	780	0	ENST00000316448.5:c.988T>G	p.Phe330Val	p.F330V	ENST00000316448	NM_004343.3	330	Ttc/Gtc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15285027	15285028	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	93	517	1	ENST00000263388.2:c.4587_4588delinsTT	p.Asp1530Tyr	p.D1530Y	ENST00000263388	NM_000435.2	1529	gcCGac/gcTTac					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15288735	15288735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	48	113	0	ENST00000263388.2:c.4004G>A	p.Ser1335Asn	p.S1335N	ENST00000263388	NM_000435.2	1335	aGc/aAc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42794685	42794685	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	107	491	1	ENST00000575354.2:c.1765C>T	p.Arg589Trp	p.R589W	ENST00000575354	NM_015125.3	589	Cgg/Tgg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938769	76938769	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	85	187	0	ENST00000373344.5:c.1979A>C	p.Lys660Thr	p.K660T	ENST00000373344	NM_000489.3	660	aAg/aCg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2126114	2126116	+	inframe_deletion	In_Frame_Del	DEL	GTG	GTG	-			P-0007012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	286	605	0	ENST00000219476.3:c.2687_2689del	p.Trp896del	p.W896del	ENST00000219476	NM_000548.3	895	atGTGg/atg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	193	427	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0005807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	44	253	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67457271	67457271	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	111	550	0	ENST00000327367.4:c.245G>A	p.Gly82Glu	p.G82E	ENST00000327367	NM_005902.3	82	gGg/gAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176167	112176167	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	157	614	1	ENST00000257430.4:c.4879del	p.Gln1627LysfsTer23	p.Q1627Kfs*23	ENST00000257430	NM_000038.5	1626	Ccc/cc					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005304-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	1401	361	2	ENST00000369535.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000369535	NM_002524.4	12	Ggt/Agt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259185	89259185	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005304-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	52	427	1	ENST00000336596.2:c.329C>T	p.Pro110Leu	p.P110L	ENST00000336596	NM_005233.5	110	cCa/cTa					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	20	307	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43818256	43818256	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	85	500	2	ENST00000372470.3:c.1721C>A	p.Ser574Tyr	p.S574Y	ENST00000372470	NM_005373.2	574	tCc/tAc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47129739	47129739	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	74	262	0	ENST00000409792.3:c.5143-2A>T		p.X1715_splice	ENST00000409792	NM_014159.6	1715						NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93974387	93974387	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	95	560	0	ENST00000369303.4:c.1667T>A	p.Ile556Asn	p.I556N	ENST00000369303	NM_004440.3	556	aTt/aAt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140439718	140439718	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	40	215	0	ENST00000288602.6:c.2021T>A	p.Leu674Gln	p.L674Q	ENST00000288602	NM_004333.4	674	cTg/cAg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974756	21974756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	48	230	0	ENST00000304494.5:c.71G>C	p.Arg24Pro	p.R24P	ENST00000304494	NM_000077.4	24	cGg/cCg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974756	21974756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	48	230	0	ENST00000304494.5:c.71G>C	p.Arg24Pro	p.R24P	ENST00000304494	NM_000077.4	24	cGg/cCg					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123260375	123260375	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	64	433	0	ENST00000358487.5:c.1526A>T	p.Lys509Met	p.K509M	ENST00000358487	NM_000141.4	509	aAg/aTg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246476	46246476	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1271	125	496	1	ENST00000334344.6:c.4570A>T	p.Arg1524Trp	p.R1524W	ENST00000334344	NM_152641.2	1524	Agg/Tgg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29012466	29012466	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	70	290	0	ENST00000282397.4:c.405C>G	p.Phe135Leu	p.F135L	ENST00000282397	NM_002019.4	135	ttC/ttG					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23632723	23632723	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	103	401	0	ENST00000261584.4:c.3073G>T	p.Ala1025Ser	p.A1025S	ENST00000261584	NM_024675.3	1025	Gct/Tct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577135	7577149	+	inframe_deletion	In_Frame_Del	DEL	TTCCGTCCCAGTAGA	TTCCGTCCCAGTAGA	-			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	157	519	0	ENST00000269305.4:c.789_803del	p.Leu264_Asn268del	p.L264_N268del	ENST00000269305	NM_001126112.2	263	aaTCTACTGGGACGGAAc/aac					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41991343	41991344	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1389	92	633	0	ENST00000219905.7:c.2174_2175del	p.Pro725ArgfsTer19	p.P725Rfs*19	ENST00000219905	NM_001164273.1	725	cCT/c					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11170475	11170475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	86	466	0	ENST00000344626.4:c.4683del	p.Gln1562ArgfsTer34	p.Q1562Rfs*34	ENST00000344626	NM_003072.3	1561	cGg/cg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	55	328	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005552	150005553	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0009763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	102	400	0	ENST00000253339.5:c.672_673del	p.Gln225SerfsTer4	p.Q225Sfs*4	ENST00000253339		224	gtTCaa/gtaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008673-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	21	586	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	22	243	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67202158	67202158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	50	302	0	ENST00000312629.5:c.1261C>T	p.Pro421Ser	p.P421S	ENST00000312629	NM_003952.2	421	Ccc/Tcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578453	7578455	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0006165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	65	331	0	ENST00000269305.4:c.475_477del	p.Ala159del	p.A159del	ENST00000269305	NM_001126112.2	159	GCC/-					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0006360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	31	165	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0006360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	31	165	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	68	386	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68842679	68842682	+	protein_altering_variant	In_Frame_Del	DEL	TATT	TATT	A			P-0006360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	111	564	1	ENST00000261769.5:c.615_618delinsA	p.Phe205_Ile206delinsLeu	p.F205_I206delinsL	ENST00000261769	NM_004360.3	205	ttTATT/ttA					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20156737	20156737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	458	426	0	ENST00000379607.5:c.20A>G	p.Lys7Arg	p.K7R	ENST00000379607	NM_001412.3	7	aAa/aGa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221319	1221319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	14	353	0	ENST00000326873.7:c.842C>T	p.Pro281Leu	p.P281L	ENST00000326873	NM_000455.4	281	cCg/cTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008429-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			712	188	448	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0008429-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			351	248	268	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128046958	128046958	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008429-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			978	311	542	2	ENST00000285398.2:c.777A>T	p.Glu259Asp	p.E259D	ENST00000285398	NM_000122.1	259	gaA/gaT					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32929285	32929285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008429-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1319	950	956	1	ENST00000380152.3:c.7295G>A	p.Arg2432Lys	p.R2432K	ENST00000380152		2432	aGa/aAa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858728	9858728	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008429-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			787	197	503	0	ENST00000330684.3:c.2673G>T	p.Gln891His	p.Q891H	ENST00000330684	NM_001134407.1	891	caG/caT					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5222852	5222852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008429-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			437	138	313	0	ENST00000357368.4:c.2951C>T	p.Pro984Leu	p.P984L	ENST00000357368	NM_002850.3	984	cCg/cTg					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30077427	30077427	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0005990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	47	257	0	ENST00000338641.4:c.1575-1G>A		p.X525_splice	ENST00000338641	NM_000268.3	525						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1299	120	580	0	ENST00000269305.4:c.641del	p.His214LeufsTer33	p.H214Lfs*33	ENST00000269305	NM_001126112.2	214	cAt/ct					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426671	47426671	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005990-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	63	270	0	ENST00000377045.4:c.916C>A	p.Pro306Thr	p.P306T	ENST00000377045	NM_001654.4	306	Cca/Aca					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176015336	176015336	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	26	339	0	ENST00000367669.3:c.1402A>G	p.Thr468Ala	p.T468A	ENST00000367669	NM_022457.5	468	Acc/Gcc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29754961	29754961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	86	417	0	ENST00000389048.3:c.974C>A	p.Thr325Asn	p.T325N	ENST00000389048	NM_004304.4	325	aCc/aAc					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227660222	227660222	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	70	438	0	ENST00000305123.5:c.3233G>T	p.Ser1078Ile	p.S1078I	ENST00000305123	NM_005544.2	1078	aGt/aTt					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149459762	149459762	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	126	533	0	ENST00000286301.3:c.445A>G	p.Met149Val	p.M149V	ENST00000286301	NM_005211.3	149	Atg/Gtg					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176517484	176517484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	141	571	1	ENST00000292408.4:c.185G>A	p.Arg62His	p.R62H	ENST00000292408	NM_213647.1	62	cGt/cAt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55227987	55227987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	49	507	0	ENST00000275493.2:c.1454G>A	p.Gly485Asp	p.G485D	ENST00000275493	NM_005228.3	485	gGt/gAt					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18499710	18499710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	30	364	1	ENST00000266497.5:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000266497		522	cCt/cTt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49437772	49437772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	67	365	0	ENST00000301067.7:c.5198C>T	p.Ala1733Val	p.A1733V	ENST00000301067	NM_003482.3	1733	gCt/gTt					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95584002	95584002	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	23	238	2	ENST00000343455.3:c.1466C>A	p.Pro489His	p.P489H	ENST00000343455	NM_177438.2	489	cCt/cAt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16089935	16089935	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	50	355	0	ENST00000268712.3:c.175C>A	p.Gln59Lys	p.Q59K	ENST00000268712	NM_006311.3	59	Caa/Aaa					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15349580	15349580	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	69	432	0	ENST00000263377.2:c.3994G>T	p.Glu1332Ter	p.E1332*	ENST00000263377	NM_058243.2	1332	Gag/Tag					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67358569	67358571	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0005889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	85	667	0	ENST00000327367.4:c.82_84del	p.Glu28del	p.E28del	ENST00000327367	NM_005902.3	26	cAGGag/cag					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405652	70405652	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005889-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	62	478	1	ENST00000373644.4:c.3171del	p.Lys1057AsnfsTer25	p.K1057Nfs*25	ENST00000373644	NM_030625.2	1056	Aaa/aa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0006463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	357	344	2	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533548	533548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	456	473	0	ENST00000311189.7:c.355G>A	p.Asp119Asn	p.D119N	ENST00000311189		119	Gac/Aac					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11190824	11190824	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	179	187	0	ENST00000361445.4:c.5375C>G	p.Ala1792Gly	p.A1792G	ENST00000361445	NM_004958.3	1792	gCg/gGg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509206	106509206	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	497	528	0	ENST00000359195.3:c.1200C>A	p.Ser400Arg	p.S400R	ENST00000359195	NM_002649.2	400	agC/agA					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67196024	67196024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	400	386	0	ENST00000312629.5:c.8C>T	p.Ala3Val	p.A3V	ENST00000312629	NM_003952.2	3	gCc/gTc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420090	49420090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	481	519	0	ENST00000301067.7:c.15659G>C	p.Arg5220Pro	p.R5220P	ENST00000301067	NM_003482.3	5220	cGc/cCc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44918710	44918710	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0006463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	326	349	4	ENST00000377967.4:c.1193A>T	p.Gln398Leu	p.Q398L	ENST00000377967	NM_021140.2	398	cAg/cTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	25	300	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56381323	56381323	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	66	450	0	ENST00000348428.3:c.967A>C	p.Asn323His	p.N323H	ENST00000348428	NM_006785.3	323	Aat/Cat					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	435	544	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95562226	95562226	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	267	599	0	ENST00000343455.3:c.5031C>G	p.Phe1677Leu	p.F1677L	ENST00000343455	NM_177438.2	1677	ttC/ttG					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	21	326	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573561	48573561	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	60	354	0	ENST00000342988.3:c.145G>T	p.Glu49Ter	p.E49*	ENST00000342988	NM_005359.5	49	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579494	7579494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	693	449	0	ENST00000269305.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000269305	NM_001126112.2	65	Aga/Tga					NEWRECORD																																																																									
HIST1H3E	0	MSKCC	GRCh37	6	26225395	26225395	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	751	907	0	ENST00000360408.1:c.13A>G	p.Lys5Glu	p.K5E	ENST00000360408	NM_003532.2	5	Aag/Gag					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93982053	93982053	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	589	656	0	ENST00000369303.4:c.1412G>C	p.Gly471Ala	p.G471A	ENST00000369303	NM_004440.3	471	gGa/gCa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139395153	139395153	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	827	606	0	ENST00000277541.6:c.5785G>T	p.Glu1929Ter	p.E1929*	ENST00000277541	NM_017617.3	1929	Gag/Tag					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56486838	56486838	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs201880960		P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	883	551	1	ENST00000267101.3:c.1252A>G	p.Ile418Val	p.I418V	ENST00000267101	NM_001982.3	418	Att/Gtt					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26975669	26975669	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	1273	659	1	ENST00000381527.3:c.1177A>T	p.Ser393Cys	p.S393C	ENST00000381527	NM_001260.1	393	Agc/Tgc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48916850	48916850	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			46	391	251	0	ENST00000267163.4:c.380G>T	p.Ser127Ile	p.S127I	ENST00000267163	NM_000321.2	127	aGt/aTt					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060968	38060968	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	261	333	0	ENST00000250448.2:c.1021A>T	p.Thr341Ser	p.T341S	ENST00000250448	NM_004496.3	341	Acg/Tcg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9934602	9934602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	362	548	2	ENST00000330684.3:c.1553G>T	p.Arg518Leu	p.R518L	ENST00000330684	NM_001134407.1	518	cGt/cTt					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14029227	14029227	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	632	619	0	ENST00000311895.7:c.1438A>G	p.Thr480Ala	p.T480A	ENST00000311895	NM_005236.2	480	Acc/Gcc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2210740	2210740	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	828	593	0	ENST00000398665.3:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000398665	NM_032482.2	413	Cgc/Tgc					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7293823	7293823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	221	157	0	ENST00000302850.5:c.80G>T	p.Gly27Val	p.G27V	ENST00000302850	NM_000208.2	27	gGc/gTc					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33792431	33792431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	434	745	0	ENST00000498907.2:c.890G>T	p.Arg297Leu	p.R297L	ENST00000498907	NM_004364.3	297	cGc/cTc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41565524	41565524	+	splice_donor_variant,non_coding_transcript_variant	Splice_Site	SNP	A	A	C			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	498	583	0	ENST00000415054.1:n.142+2T>G		p.X48_splice	ENST00000415054		48						NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53225914	53225914	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	403	638	1	ENST00000375401.3:c.2935A>G	p.Ile979Val	p.I979V	ENST00000375401	NM_004187.3	979	Att/Gtt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68835669	68835670	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0009184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	544	673	0	ENST00000261769.5:c.260_261delinsCT	p.Arg87Thr	p.R87T	ENST00000261769	NM_004360.3	87	aGG/aCT					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	199	287	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	444	362	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	337	776	0	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108143509	108143509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	447	656	1	ENST00000278616.4:c.3214G>A	p.Glu1072Lys	p.E1072K	ENST00000278616	NM_000051.3	1072	Gaa/Aaa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023696	27023696	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	247	561	0	ENST00000324856.7:c.802C>T	p.Gln268Ter	p.Q268*	ENST00000324856	NM_006015.4	268	Cag/Tag					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16255133	16255133	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	278	588	0	ENST00000375759.3:c.2398G>T	p.Glu800Ter	p.E800*	ENST00000375759	NM_015001.2	800	Gag/Tag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56178143	56178143	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	197	408	0	ENST00000399503.3:c.3116C>G	p.Ser1039Ter	p.S1039*	ENST00000399503	NM_005921.1	1039	tCa/tGa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56178646	56178646	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	381	408	0	ENST00000399503.3:c.3619C>T	p.Gln1207Ter	p.Q1207*	ENST00000399503	NM_005921.1	1207	Cag/Tag					NEWRECORD																																																																									
HIST1H3F	0	MSKCC	GRCh37	6	26250743	26250743	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1415	391	1033	0	ENST00000446824.2:c.91C>G	p.Pro31Ala	p.P31A	ENST00000446824	NM_021018.2	31	Cca/Gca					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55270250	55270250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	214	592	1	ENST00000275493.2:c.3203G>A	p.Arg1068Gln	p.R1068Q	ENST00000275493	NM_005228.3	1068	cGa/cAa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151851415	151851415	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	539	656	0	ENST00000262189.6:c.12076G>T	p.Glu4026Ter	p.E4026*	ENST00000262189	NM_170606.2	4026	Gag/Tag					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128752653	128752653	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	348	451	0	ENST00000377970.2:c.814G>T	p.Glu272Ter	p.E272*	ENST00000377970	NM_002467.4	272	Gaa/Taa					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64571841	64571841	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	912	954	0	ENST00000337652.1:c.1813C>G	p.Leu605Val	p.L605V	ENST00000337652	NM_130803.2	605	Ctg/Gtg					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481859	56481859	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	315	594	0	ENST00000267101.3:c.787C>G	p.Leu263Val	p.L263V	ENST00000267101	NM_001982.3	263	Ctt/Gtt					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28626775	28626775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	229	570	0	ENST00000241453.7:c.521G>C	p.Arg174Thr	p.R174T	ENST00000241453	NM_004119.2	174	aGa/aCa					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29091121	29091121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	314	435	2	ENST00000328354.6:c.1369G>A	p.Glu457Lys	p.E457K	ENST00000328354	NM_007194.3	457	Gag/Aag					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29091814	29091814	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	251	394	0	ENST00000328354.6:c.1143G>A	p.Met381Ile	p.M381I	ENST00000328354	NM_007194.3	381	atG/atA					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123179189	123179189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	494	619	0	ENST00000218089.9:c.638G>A	p.Arg213Lys	p.R213K	ENST00000218089	NM_001042749.1	213	aGa/aAa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47143033	47143033	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	180	454	0	ENST00000409792.3:c.4930G>T	p.Gly1644Ter	p.G1644*	ENST00000409792	NM_014159.6	1644	Gga/Tga					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440393	52440393	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	97	225	1	ENST00000460680.1:c.660-1G>A		p.X220_splice	ENST00000460680	NM_004656.3	220						NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	86	281	1	ENST00000281708.4:c.1436G>T	p.Arg479Leu	p.R479L	ENST00000281708	NM_033632.3	479	cGa/cTa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108175437	108175437	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	153	422	0	ENST00000278616.4:c.5532C>G	p.Tyr1844Ter	p.Y1844*	ENST00000278616	NM_000051.3	1844	taC/taG					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30051615	30051615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	184	517	0	ENST00000338641.4:c.549G>A	p.Met183Ile	p.M183I	ENST00000338641	NM_000268.3	183	atG/atA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008478-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	339	371	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68846065	68846065	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008478-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	115	560	0	ENST00000261769.5:c.1036C>T	p.Gln346Ter	p.Q346*	ENST00000261769	NM_004360.3	346	Caa/Taa					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187443345	187443347	+	inframe_deletion	In_Frame_Del	DEL	CGA	CGA	-			P-0008478-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	234	409	0	ENST00000232014.4:c.1779_1781del	p.Arg594del	p.R594del	ENST00000232014	NM_001130845.1	593	acTCGa/aca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	245	454	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156846291	156846291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	87	544	0	ENST00000524377.1:c.1732G>A	p.Val578Ile	p.V578I	ENST00000524377	NM_002529.3	578	Gtc/Atc					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25467144	25467144	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	91	536	0	ENST00000264709.3:c.1731G>C	p.Lys577Asn	p.K577N	ENST00000264709	NM_175629.2	577	aaG/aaC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578281	7578281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	186	477	0	ENST00000269305.4:c.568C>A	p.Pro190Thr	p.P190T	ENST00000269305	NM_001126112.2	190	Cct/Act					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40827922	40827922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	101	584	0	ENST00000373198.4:c.2506G>T	p.Asp836Tyr	p.D836Y	ENST00000373198	NM_133170.3	836	Gat/Tat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	348	568	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	94	298	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89725042	89725042	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	296	387	0	ENST00000371953.3:c.1027-2A>T		p.X343_splice	ENST00000371953	NM_000314.4	343						NEWRECORD																																																																									
ID3	0	MSKCC	GRCh37	1	23885761	23885761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	174	657	0	ENST00000374561.5:c.157G>A	p.Glu53Lys	p.E53K	ENST00000374561	NM_002167.4	53	Gaa/Aaa					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25964923	25964923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	134	439	0	ENST00000435504.4:c.4283G>T	p.Cys1428Phe	p.C1428F	ENST00000435504		1428	tGc/tTc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212426761	212426761	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	250	388	0	ENST00000342788.4:c.2354G>T	p.Gly785Val	p.G785V	ENST00000342788	NM_005235.2	785	gGt/gTt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52712591	52712591	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	239	416	0	ENST00000394830.3:c.161A>G	p.Tyr54Cys	p.Y54C	ENST00000394830	NM_018313.4	54	tAt/tGt					NEWRECORD																																																																									
HIST1H3A	0	MSKCC	GRCh37	6	26020742	26020742	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	227	674	0	ENST00000357647.3:c.25C>G	p.Arg9Gly	p.R9G	ENST00000357647	NM_003529.2	9	Cgg/Ggg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106524663	106524663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	584	347	1	ENST00000359195.3:c.2824C>A	p.Leu942Ile	p.L942I	ENST00000359195	NM_002649.2	942	Ctt/Att					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63852745	63852745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	162	142	0	ENST00000279873.7:c.3523C>T	p.Pro1175Ser	p.P1175S	ENST00000279873	NM_032199.2	1175	Cca/Tca					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123279562	123279562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	364	491	0	ENST00000358487.5:c.870G>C	p.Trp290Cys	p.W290C	ENST00000358487	NM_000141.4	290	tgG/tgC					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916158	9916158	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	283	425	0	ENST00000330684.3:c.2131A>C	p.Lys711Gln	p.K711Q	ENST00000330684	NM_001134407.1	711	Aaa/Caa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40733232	40733232	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	208	366	0	ENST00000373198.4:c.3574A>T	p.Ser1192Cys	p.S1192C	ENST00000373198	NM_133170.3	1192	Agc/Tgc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41531904	41531904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005492-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	109	369	0	ENST00000263253.7:c.1616C>T	p.Ser539Phe	p.S539F	ENST00000263253	NM_001429.3	539	tCt/tTt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	105	261	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266107	41266107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	229	782	0	ENST00000349496.5:c.104T>G	p.Ile35Ser	p.I35S	ENST00000349496	NM_001904.3	35	aTc/aGc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55564705	55564705	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	221	675	0	ENST00000288135.5:c.593A>G	p.Glu198Gly	p.E198G	ENST00000288135	NM_000222.2	198	gAa/gGa					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38960607	38960607	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	166	609	0	ENST00000357387.3:c.1744A>G	p.Lys582Glu	p.K582E	ENST00000357387	NM_152756.3	582	Aag/Gag					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	475207	475207	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	201	908	2	ENST00000399788.2:c.430A>T	p.Ser144Cys	p.S144C	ENST00000399788	NM_001042603.1	144	Agt/Tgt					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098806	178098829	+	inframe_deletion	In_Frame_Del	DEL	GTCTCTTCATCTAGTTGTAACTGA	GTCTCTTCATCTAGTTGTAACTGA	-			P-0005854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	227	838	1	ENST00000397062.3:c.216_239del	p.Gln73_Thr80del	p.Q73_T80del	ENST00000397062	NM_006164.4	72	gcTCAGTTACAACTAGATGAAGAGACa/gca					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11189847	11189847	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	142	467	0	ENST00000361445.4:c.5662T>A	p.Phe1888Ile	p.F1888I	ENST00000361445	NM_004958.3	1888	Ttc/Atc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52620464	52620464	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	170	419	0	ENST00000394830.3:c.3289G>T	p.Glu1097Ter	p.E1097*	ENST00000394830	NM_018313.4	1097	Gaa/Taa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108163474	108163474	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	56	494	0	ENST00000278616.4:c.4565G>C	p.Gly1522Ala	p.G1522A	ENST00000278616	NM_000051.3	1522	gGt/gCt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108201106	108201106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	42	332	0	ENST00000278616.4:c.7473G>C	p.Trp2491Cys	p.W2491C	ENST00000278616	NM_000051.3	2491	tgG/tgC					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105239420	105239420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	34	291	0	ENST00000349310.3:c.967G>A	p.Asp323Asn	p.D323N	ENST00000349310	NM_001014432.1	323	Gac/Aac					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	71	351	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	94	239	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48878187	48878187	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0006029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	19	212	0	ENST00000267163.4:c.137+2T>A		p.X46_splice	ENST00000267163	NM_000321.2	46						NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061204	38061204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	34	220	0	ENST00000250448.2:c.785G>A	p.Arg262His	p.R262H	ENST00000250448	NM_004496.3	262	cGc/cAc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55266442	55266442	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	49	448	0	ENST00000275493.2:c.2734T>G	p.Ser912Ala	p.S912A	ENST00000275493	NM_005228.3	912	Tcc/Gcc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151859302	151859701	+	frameshift_variant	Frame_Shift_Del	DEL	GATGACTTTTTATTTTTCAACAAGTGTTTCAGAAGTTCATTCCCTGAGTCTCCTTTGGCAGCAGGGGCCCCAGCAGAATGGGGAGGACTCTGTGCTGAGGAGACAGGACAGGCTACAGCGTTTCCTTCTACCTTACTACCATTCTGTTCCTCCAATTTAGGCTCCTCTTGGCCTGGGCAGGACTCTGTCTCAGCCTTTTCCAGTTTTATCTCTTCTGTTTTGGCAGGGGTTTCCATGGAGAGCTTGTCTACTTCTGAATTTGCATACGTCTGTTGATTTGGAGTTGCTTGTGAGAAATCACTATTGGGCAGTTTGTTCTCTAATTCTGTACATAGCTGGCCTGCTGCCATATTGGGAGTGGATGGGCCGACTGGTTCCACCGACTCTTGGTCGGCTTGTT	GATGACTTTTTATTTTTCAACAAGTGTTTCAGAAGTTCATTCCCTGAGTCTCCTTTGGCAGCAGGGGCCCCAGCAGAATGGGGAGGACTCTGTGCTGAGGAGACAGGACAGGCTACAGCGTTTCCTTCTACCTTACTACCATTCTGTTCCTCCAATTTAGGCTCCTCTTGGCCTGGGCAGGACTCTGTCTCAGCCTTTTCCAGTTTTATCTCTTCTGTTTTGGCAGGGGTTTCCATGGAGAGCTTGTCTACTTCTGAATTTGCATACGTCTGTTGATTTGGAGTTGCTTGTGAGAAATCACTATTGGGCAGTTTGTTCTCTAATTCTGTACATAGCTGGCCTGCTGCCATATTGGGAGTGGATGGGCCGACTGGTTCCACCGACTCTTGGTCGGCTTGTT	-			P-0006029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	63	274	0	ENST00000262189.6:c.10961_11360del	p.Gln3654LeufsTer4	p.Q3654Lfs*4	ENST00000262189	NM_170606.2	3654	cAACAAGCCGACCAAGAGTCGGTGGAACCAGTCGGCCCATCCACTCCCAATATGGCAGCAGGCCAGCTATGTACAGAATTAGAGAACAAACTGCCCAATAGTGATTTCTCACAAGCAACTCCAAATCAACAGACGTATGCAAATTCAGAAGTAGACAAGCTCTCCATGGAAACCCCTGCCAAAACAGAAGAGATAAAACTGGAAAAGGCTGAGACAGAGTCCTGCCCAGGCCAAGAGGAGCCTAAATTGGAGGAACAGAATGGTAGTAAGGTAGAAGGAAACGCTGTAGCCTGTCCTGTCTCCTCAGCACAGAGTCCTCCCCATTCTGCTGGGGCCCCTGCTGCCAAAGGAGACTCAGGGAATGAACTTCTGAAACACTTGTTGAAAAATAAAAAGTCATCt/ct					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140477842	140477850	+	inframe_deletion	In_Frame_Del	DEL	GCTGTCACA	GCTGTCACA	-			P-0006029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	80	406	1	ENST00000288602.6:c.1458_1466del	p.Asn486_Ala489delinsLys	p.N486_A489delinsK	ENST00000288602	NM_004333.4	486	aaTGTGACAGCa/aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	218	422	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	119	254	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204515931	204515931	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	590	541	0	ENST00000367182.3:c.829G>A	p.Glu277Lys	p.E277K	ENST00000367182	NM_001278516.1	277	Gaa/Aaa					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25497952	25497952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	108	239	0	ENST00000264709.3:c.497C>T	p.Ser166Phe	p.S166F	ENST00000264709	NM_175629.2	166	tCc/tTc					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215595214	215595214	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	158	359	0	ENST00000260947.4:c.1922G>A	p.Arg641Gln	p.R641Q	ENST00000260947	NM_000465.2	641	cGa/cAa					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186504987	186504987	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1980299		P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	440	638	2	ENST00000323963.5:c.843T>A	p.Asn281Lys	p.N281K	ENST00000323963		281	aaT/aaA					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1807856	1807856	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	234	545	0	ENST00000260795.2:c.1915G>T	p.Ala639Ser	p.A639S	ENST00000260795		639	Gcc/Tcc					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55138603	55138603	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61735621		P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	78	431	1	ENST00000257290.5:c.1280C>T	p.Ser427Leu	p.S427L	ENST00000257290	NM_006206.4	427	tCa/tTa					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245420	153245420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	265	406	1	ENST00000281708.4:c.1771G>A	p.Asp591Asn	p.D591N	ENST00000281708	NM_033632.3	591	Gac/Aac					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27840069	27840069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	371	817	1	ENST00000328488.2:c.25C>T	p.Arg9Cys	p.R9C	ENST00000328488	NM_003533.2	9	Cgc/Tgc					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117870635	117870635	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	463	651	0	ENST00000297338.2:c.437G>C	p.Arg146Thr	p.R146T	ENST00000297338	NM_006265.2	146	aGa/aCa					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56770065	56770065	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	24	508	0	ENST00000337432.4:c.61C>T	p.Pro21Ser	p.P21S	ENST00000337432	NM_058216.2	21	Cca/Tca					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11168931	11168931	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	88	376	0	ENST00000344626.4:c.4425C>A	p.Ser1475Arg	p.S1475R	ENST00000344626	NM_003072.3	1475	agC/agA					NEWRECORD																																																																									
XIAP	0	MSKCC	GRCh37	X	123034483	123034483	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	44	486	0	ENST00000355640.3:c.1240C>G	p.Leu414Val	p.L414V	ENST00000355640		414	Cta/Gta					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120378	94120378	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	128	617	0	ENST00000369303.4:c.673del	p.Ser225ProfsTer3	p.S225Pfs*3	ENST00000369303	NM_004440.3	225	Tcc/cc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039669	47039669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	228	290	0	ENST00000329236.7:c.887G>T	p.Gly296Val	p.G296V	ENST00000329236	NM_001204466.1	296	gGc/gTc					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729101	66729101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	41	462	0	ENST00000307102.5:c.309C>G	p.Ile103Met	p.I103M	ENST00000307102	NM_002755.3	103	atC/atG					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220707	1220707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	632	419	0	ENST00000326873.7:c.725G>T	p.Gly242Val	p.G242V	ENST00000326873	NM_000455.4	242	gGg/gTg					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131973802	131973802	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	29	363	2	ENST00000265335.6:c.3505G>T	p.Ala1169Ser	p.A1169S	ENST00000265335		1169	Gcc/Tcc					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23538982	23538982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	266	520	0	ENST00000380871.4:c.457G>C	p.Glu153Gln	p.E153Q	ENST00000380871	NM_006167.3	153	Gaa/Caa					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53245080	53245080	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			24	111	351	0	ENST00000375401.3:c.860C>A	p.Ser287Ter	p.S287*	ENST00000375401	NM_004187.3	287	tCg/tAg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11169476	11169483	+	frameshift_variant	Frame_Shift_Del	DEL	AACCACAA	AACCACAA	-			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	199	520	0	ENST00000344626.4:c.4546_4553del	p.Asn1516ValfsTer30	p.N1516Vfs*30	ENST00000344626	NM_003072.3	1516	AACCACAAg/g					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602922	10602923	+	missense_variant	Missense_Mutation	DNP	TC	TC	GA			P-0008976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	433	385	0	ENST00000171111.5:c.655_656inv	p.Glu219Ser	p.E219S	ENST00000171111	NM_203500.1	219	GAg/TCg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	68	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	304	352	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	163	341	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	243	331	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420688	49420688	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	121	257	0	ENST00000301067.7:c.15061C>T	p.Arg5021Ter	p.R5021*	ENST00000301067	NM_003482.3	5021	Cga/Tga					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12660124	12660124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	90	458	0	ENST00000251849.4:c.97G>C	p.Val33Leu	p.V33L	ENST00000251849	NM_002880.3	33	Gtt/Ctt					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2956965	2956965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	314	365	0	ENST00000396946.4:c.2662C>T	p.Arg888Cys	p.R888C	ENST00000396946	NM_032415.4	888	Cgt/Tgt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0008302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	123	249	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	51	64	0	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52620673	52620674	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0008302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	122	252	0	ENST00000394830.3:c.3079_3080del	p.Asp1028Ter	p.D1028*	ENST00000394830	NM_018313.4	1027	CGa/a					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188224	10188224	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	239	423	0	ENST00000256474.2:c.369delG	p.Thr124HisfsTer35	p.T124Hfs*35	ENST00000256474	NM_000551.3	123	Ggg/gg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0009111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	87	283	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	232	409	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	42	213	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467825	66467825	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	115	519	1	ENST00000273854.3:c.444G>T	p.Lys148Asn	p.K148N	ENST00000273854	NM_004439.5	148	aaG/aaT					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0004888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	96	177	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759890	133759890	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	10	249	0	ENST00000318560.5:c.2213G>A	p.Arg738Gln	p.R738Q	ENST00000318560	NM_005157.4	738	cGg/cAg					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7267433	7267433	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143919163		P-0004888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	56	180	0	ENST00000302850.5:c.575G>A	p.Gly192Asp	p.G192D	ENST00000302850	NM_000208.2	192	gGc/gAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577059	7577068	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTTTCTTG	CCCTTTCTTG	-			P-0004888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	43	221	0	ENST00000269305.4:c.870_879del	p.Lys291SerfsTer51	p.K291Sfs*51	ENST00000269305	NM_001126112.2	290	cgCAAGAAAGGG/cg					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150016264	150016264	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	148	468	1	ENST00000253339.5:c.442C>T	p.Arg148Ter	p.R148*	ENST00000253339		148	Cga/Tga					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108115733	108115733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	54	212	0	ENST00000278616.4:c.881G>A	p.Gly294Glu	p.G294E	ENST00000278616	NM_000051.3	294	gGa/gAa					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105237106	105237106	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	126	575	0	ENST00000349310.3:c.1339A>T	p.Ile447Phe	p.I447F	ENST00000349310	NM_001014432.1	447	Atc/Ttc					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45867689	45867689	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	135	596	0	ENST00000391945.4:c.711C>G	p.His237Gln	p.H237Q	ENST00000391945	NM_000400.3	237	caC/caG					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	314	399	0	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	89	488	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt					NEWRECORD																																																																									
SRSF2	0	MSKCC	GRCh37	17	74732318	74732318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	104	712	0	ENST00000359995.5:c.591G>C	p.Lys197Asn	p.K197N	ENST00000359995	NM_001195427.1	197	aaG/aaC					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55984928	55984928	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	28	490	0	ENST00000263923.4:c.201G>C	p.Gln67His	p.Q67H	ENST00000263923	NM_002253.2	67	caG/caC					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532735	187532735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	53	542	1	ENST00000441802.2:c.9658G>A	p.Val3220Ile	p.V3220I	ENST00000441802	NM_005245.3	3220	Gtt/Att					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151851141	151851141	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	33	600	0	ENST00000262189.6:c.12230C>G	p.Ser4077Ter	p.S4077*	ENST00000262189	NM_170606.2	4077	tCa/tGa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431975	49431975	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	31	525	1	ENST00000301067.7:c.9164C>A	p.Pro3055His	p.P3055H	ENST00000301067	NM_003482.3	3055	cCt/cAt					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89806439	89806439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	62	593	0	ENST00000389301.3:c.3897G>T	p.Lys1299Asn	p.K1299N	ENST00000389301	NM_000135.2	1299	aaG/aaT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	82	607	0	ENST00000269305.4:c.421T>G	p.Cys141Gly	p.C141G	ENST00000269305	NM_001126112.2	141	Tgc/Ggc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49427024	49427031	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGGGGG	CCTGGGGG	-			P-0005718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	27	455	0	ENST00000301067.7:c.11457_11464del	p.Gln3821SerfsTer188	p.Q3821Sfs*188	ENST00000301067	NM_003482.3	3819	ggCCCCCAGGgc/gggc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	188	452	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	50	256	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37067386	37067386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	103	376	0	ENST00000231790.2:c.1297G>C	p.Glu433Gln	p.E433Q	ENST00000231790	NM_000249.3	433	Gaa/Caa					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80336376	80336376	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	35	306	0	ENST00000286548.4:c.943G>C	p.Asp315His	p.D315H	ENST00000286548	NM_002072.3	315	Gac/Cac					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	93	259	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102813343	102813343	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	109	403	0	ENST00000307046.8:c.346A>T	p.Lys116Ter	p.K116*	ENST00000307046	NM_001111285.1	116	Aag/Tag					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95560382	95560382	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	70	277	0	ENST00000343455.3:c.5207G>T	p.Arg1736Leu	p.R1736L	ENST00000343455	NM_177438.2	1736	cGg/cTg					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3778653	3778653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	86	297	0	ENST00000262367.5:c.6395G>T	p.Gly2132Val	p.G2132V	ENST00000262367	NM_004380.2	2132	gGc/gTc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15299866	15299866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	216	392	1	ENST00000263388.2:c.1312G>A	p.Gly438Arg	p.G438R	ENST00000263388	NM_000435.2	438	Ggg/Agg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974809	21974809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	49	67	0	ENST00000304494.5:c.18del	p.Ser7AlafsTer19	p.S7Afs*19	ENST00000304494	NM_000077.4	6	ggG/gg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974809	21974809	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	49	67	0	ENST00000304494.5:c.18del	p.Ser7AlafsTer19	p.S7Afs*19	ENST00000304494	NM_000077.4	6	ggG/gg					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27023904	27023904	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1232964733		P-0008724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	88	132	0	ENST00000324856.7:c.1015del	p.Ala339LeufsTer24	p.A339Lfs*24	ENST00000324856	NM_006015.4	337	tGg/tg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0008724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	255	609	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0008724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	699	379	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521615	89521615	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	110	301	0	ENST00000336596.2:c.2692C>T	p.Pro898Ser	p.P898S	ENST00000336596	NM_005233.5	898	Cca/Tca					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532540	187532540	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0008724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	147	442	0	ENST00000441802.2:c.9853G>C	p.Gly3285Arg	p.G3285R	ENST00000441802	NM_005245.3	3285	Ggg/Cgg					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46279865	46279865	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1460	216	474	0	ENST00000371998.3:c.3791A>C	p.Gln1264Pro	p.Q1264P	ENST00000371998		1264	cAa/cCa					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	71	134	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0008009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	438	488	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100922293	100922293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149186732		P-0008009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	195	682	0	ENST00000325455.5:c.2219G>A	p.Arg740Gln	p.R740Q	ENST00000325455	NM_001202474.3	740	cGa/cAa					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198273258	198273258	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	160	399	1	ENST00000335508.6:c.952C>T	p.Arg318Ter	p.R318*	ENST00000335508	NM_012433.2	318	Cga/Tga					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134911568	134911568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	125	326	0	ENST00000398015.3:c.2033C>T	p.Pro678Leu	p.P678L	ENST00000398015	NM_004441.4	678	cCt/cTt					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142254972	142254972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	121	307	0	ENST00000350721.4:c.3797C>T	p.Ala1266Val	p.A1266V	ENST00000350721	NM_001184.3	1266	gCc/gTc					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31945009	31945009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	374	588	0	ENST00000340398.3:c.92C>T	p.Pro31Leu	p.P31L	ENST00000340398	NM_001013699.2	31	cCc/cTc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857547	9857547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	82	312	0	ENST00000330684.3:c.3854G>A	p.Arg1285Lys	p.R1285K	ENST00000330684	NM_001134407.1	1285	aGg/aAg					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78599546	78599546	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	279	418	1	ENST00000306801.3:c.218C>T	p.Pro73Leu	p.P73L	ENST00000306801	NM_020761.2	73	cCc/cTc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042172	42042173	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0008009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	330	971	2	ENST00000219905.7:c.6367_6368delinsTT	p.Pro2123Leu	p.P2123L	ENST00000219905	NM_001164273.1	2123	CCa/TTa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	96	562	3	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	69	439	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	120	436	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc					NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0007336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	106	533	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131923706	131923706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	63	589	0	ENST00000265335.6:c.976C>T	p.His326Tyr	p.H326Y	ENST00000265335		326	Cat/Tat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	351	525	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56867142	56867142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	313	627	4	ENST00000308159.5:c.1361C>T	p.Thr454Met	p.T454M	ENST00000308159	NM_014669.4	454	aCg/aTg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11132500	11132500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	375	377	0	ENST00000344626.4:c.2716C>T	p.Arg906Cys	p.R906C	ENST00000344626	NM_003072.3	906	Cgc/Tgc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175450	112175457	+	frameshift_variant	Frame_Shift_Del	DEL	TGTACTTC	TGTACTTC	-			P-0007869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	188	296	0	ENST00000257430.4:c.4162_4169del	p.Thr1388GlnfsTer4	p.T1388Qfs*4	ENST00000257430	NM_000038.5	1387	TGTACTTCt/t					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	559	499	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55133889	55133889	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	525	459	0	ENST00000257290.5:c.1102G>T	p.Glu368Ter	p.E368*	ENST00000257290	NM_006206.4	368	Gaa/Taa					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30672504	30672504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	363	673	4	ENST00000376406.3:c.4456C>A	p.Pro1486Thr	p.P1486T	ENST00000376406	NM_014641.2	1486	Cct/Act					NEWRECORD																																																																									
XRCC2	0	MSKCC	GRCh37	7	152357786	152357786	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0009601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	381	516	0	ENST00000359321.1:c.121G>C	p.Gly41Arg	p.G41R	ENST00000359321	NM_005431.1	41	Ggt/Cgt					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128752950	128752950	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1723	305	390	0	ENST00000377970.2:c.1111A>T	p.Arg371Trp	p.R371W	ENST00000377970	NM_002467.4	371	Agg/Tgg					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	493313	493313	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1291	316	505	0	ENST00000399788.2:c.250A>T	p.Thr84Ser	p.T84S	ENST00000399788	NM_001042603.1	84	Acc/Tcc					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4385178	4385178	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	319	400	0	ENST00000261254.3:c.203A>C	p.Glu68Ala	p.E68A	ENST00000261254	NM_001759.3	68	gAg/gCg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29008017	29008017	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	315	475	0	ENST00000282397.4:c.752A>G	p.Asn251Ser	p.N251S	ENST00000282397	NM_002019.4	251	aAt/aGt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48916712	48916802	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGATCTTTATTTTTTGTTCCCAGGGAGGTTATATTCAAAAGAAAAAGGAACTGTGGGGAATCTGTATCTTTATTGCAGCAGTTGACCTAGA	TGATCTTTATTTTTTGTTCCCAGGGAGGTTATATTCAAAAGAAAAAGGAACTGTGGGGAATCTGTATCTTTATTGCAGCAGTTGACCTAGA	-			P-0009601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	219	347	0	ENST00000267163.4:c.265-20_335del		p.X89_splice	ENST00000267163	NM_000321.2	89						NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98231121	98231127	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAGGC	TGGAGGC	-			P-0009601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	163	352	0	ENST00000331920.6:c.2156_2162del	p.Ser719ThrfsTer25	p.S719Tfs*25	ENST00000331920	NM_000264.3	719	aGCCTCCAc/ac					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0009520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	21	143	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46231437	46231437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	213	647	1	ENST00000334344.6:c.1277C>T	p.Thr426Met	p.T426M	ENST00000334344	NM_152641.2	426	aCg/aTg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2202	718	643	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	194	483	0	ENST00000335508.6:c.1874G>T	p.Arg625Leu	p.R625L	ENST00000335508	NM_012433.2	625	cGt/cTt					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176517403	176517403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	50	352	0	ENST00000292408.4:c.104C>T	p.Ala35Val	p.A35V	ENST00000292408	NM_213647.1	35	gCt/gTt					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98239843	98239843	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	229	678	0	ENST00000331920.6:c.1489G>A	p.Ala497Thr	p.A497T	ENST00000331920	NM_000264.3	497	Gct/Act					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137524714	137524716	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0008524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	250	746	0	ENST00000367739.4:c.653_655delAAG	p.Glu218del	p.E218del	ENST00000367739	NM_000416.2	218	gAAGga/gga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	67	262	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117641151	117641151	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	63	476	1	ENST00000368508.3:c.5820C>A	p.Phe1940Leu	p.F1940L	ENST00000368508	NM_002944.2	1940	ttC/ttA					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98242769	98242769	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	68	252	0	ENST00000331920.6:c.848A>G	p.Asn283Ser	p.N283S	ENST00000331920	NM_000264.3	283	aAt/aGt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039182	49039182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	40	294	0	ENST00000267163.4:c.2260G>C	p.Val754Leu	p.V754L	ENST00000267163	NM_000321.2	754	Gta/Cta					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95599669	95599669	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	43	298	0	ENST00000343455.3:c.127A>G	p.Thr43Ala	p.T43A	ENST00000343455	NM_177438.2	43	Acg/Gcg					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31021190	31021190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	69	282	1	ENST00000375687.4:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000375687	NM_015338.5	397	Cgt/Tgt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11095949	11095949	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0007634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	48	221	0	ENST00000344626.4:c.225del	p.Met76TrpfsTer18	p.M76Wfs*18	ENST00000344626	NM_003072.3	75	Ccc/cc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	46	310	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0007970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	30	241	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	67	400	2	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72076815	72076815	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	64	313	0	ENST00000357731.5:c.682C>T	p.Gln228Ter	p.Q228*	ENST00000357731	NM_173808.2	228	Cag/Tag					NEWRECORD																																																																									
FAM175A	0	MSKCC	GRCh37	4	84384745	84384745	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	27	212	0	ENST00000321945.7:c.698T>C	p.Val233Ala	p.V233A	ENST00000321945	NM_139076.2	233	gTg/gCg					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13971210	13971210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	61	326	0	ENST00000405192.2:c.719C>T	p.Thr240Ile	p.T240I	ENST00000405192	NM_001163147.1	240	aCc/aTc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151879201	151879201	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	72	454	0	ENST00000262189.6:c.5744C>T	p.Ser1915Phe	p.S1915F	ENST00000262189	NM_170606.2	1915	tCc/tTc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971068	21971068	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	23	220	0	ENST00000304494.5:c.290T>G	p.Leu97Arg	p.L97R	ENST00000304494	NM_000077.4	97	cTg/cGg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971068	21971068	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	23	220	0	ENST00000304494.5:c.290T>G	p.Leu97Arg	p.L97R	ENST00000304494	NM_000077.4	97	cTg/cGg					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	419049	419049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	60	414	0	ENST00000399788.2:c.3298G>A	p.Glu1100Lys	p.E1100K	ENST00000399788	NM_001042603.1	1100	Gaa/Aaa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15967454	15967454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	66	387	0	ENST00000268712.3:c.5149G>A	p.Glu1717Lys	p.E1717K	ENST00000268712	NM_006311.3	1717	Gaa/Aaa					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9520257	9520257	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	45	261	0	ENST00000353224.5:c.2012C>T	p.Ser671Leu	p.S671L	ENST00000353224	NM_177990.2	671	tCa/tTa					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410948	63410948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	33	228	0	ENST00000330258.3:c.2219C>T	p.Ser740Phe	p.S740F	ENST00000330258	NM_152424.3	740	tCt/tTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576883	7576883	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	76	501	0	ENST00000269305.4:c.963del	p.Lys321AsnfsTer24	p.K321Nfs*24	ENST00000269305	NM_001126112.2	321	aaA/aa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	71	476	2	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023754	27023754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	81	403	0	ENST00000324856.7:c.860C>T	p.Pro287Leu	p.P287L	ENST00000324856	NM_006015.4	287	cCc/cTc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29664504	29664504	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	78	476	0	ENST00000358273.4:c.6546C>G	p.Tyr2182Ter	p.Y2182*	ENST00000358273	NM_001042492.2	2182	taC/taG					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922096	39922096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	130	854	0	ENST00000378444.4:c.4076G>A	p.Gly1359Glu	p.G1359E	ENST00000378444	NM_001123385.1	1359	gGg/gAg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66905879	66905879	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	69	702	0	ENST00000374690.3:c.1796G>A	p.Arg599Lys	p.R599K	ENST00000374690	NM_000044.3	599	aGa/aAa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	50	253	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	49	258	0	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11143993	11143993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	85	253	0	ENST00000344626.4:c.3574C>T	p.Arg1192Cys	p.R1192C	ENST00000344626	NM_003072.3	1192	Cgc/Tgc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212587167	212587167	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	163	348	0	ENST00000342788.4:c.834T>A	p.Asn278Lys	p.N278K	ENST00000342788	NM_005235.2	278	aaT/aaA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0007758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	190	423	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68844151	68844151	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	175	423	2	ENST00000261769.5:c.739G>T	p.Glu247Ter	p.E247*	ENST00000261769	NM_004360.3	247	Gag/Tag					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7217869	7217869	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	241	745	0	ENST00000380728.2:c.142C>T	p.Gln48Ter	p.Q48*	ENST00000380728		48	Cag/Tag					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11999013	11999013	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0007758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	101	321	0	ENST00000353533.5:c.513+2T>C		p.X171_splice	ENST00000353533	NM_003010.3	171						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	174	260	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	274	385	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	300	300	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142215330	142215330	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	146	417	0	ENST00000350721.4:c.5771G>T	p.Trp1924Leu	p.W1924L	ENST00000350721	NM_001184.3	1924	tGg/tTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579566	7579566	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	271	334	0	ENST00000269305.4:c.121G>C	p.Asp41His	p.D41H	ENST00000269305	NM_001126112.2	41	Gat/Cat					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30035169	30035169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	595	448	0	ENST00000338641.4:c.331C>T	p.Gln111Ter	p.Q111*	ENST00000338641	NM_000268.3	111	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0005058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	47	490	4	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44923035	44923035	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	35	277	0	ENST00000377967.4:c.1896G>A	p.Trp632Ter	p.W632*	ENST00000377967	NM_021140.2	632	tgG/tgA					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153244221	153244221	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	80	503	0	ENST00000281708.4:c.1936G>T	p.Val646Leu	p.V646L	ENST00000281708	NM_033632.3	646	Gta/Tta					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	95	410	0	ENST00000326873.7:c.580G>T	p.Asp194Tyr	p.D194Y	ENST00000326873	NM_000455.4	194	Gac/Tac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	98	382	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc					NEWRECORD																																																																									
CTLA4	0	MSKCC	GRCh37	2	204732727	204732727	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	109	366	0	ENST00000302823.3:c.62C>A	p.Pro21His	p.P21H	ENST00000302823	NM_005214.4	21	cCc/cAc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212285182	212285182	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	71	356	0	ENST00000342788.4:c.3119G>C	p.Arg1040Thr	p.R1040T	ENST00000342788	NM_005235.2	1040	aGa/aCa					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215632276	215632276	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	65	515	0	ENST00000260947.4:c.1498G>C	p.Asp500His	p.D500H	ENST00000260947	NM_000465.2	500	Gat/Cat					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69928295	69928295	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	115	320	1	ENST00000352241.4:c.115G>T	p.Glu39Ter	p.E39*	ENST00000352241	NM_198159.2	39	Gag/Tag					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89391084	89391084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	135	412	0	ENST00000336596.2:c.1150C>A	p.Pro384Thr	p.P384T	ENST00000336596	NM_005233.5	384	Cct/Act					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55141119	55141119	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	57	370	0	ENST00000257290.5:c.1765C>A	p.Pro589Thr	p.P589T	ENST00000257290	NM_006206.4	589	Cca/Aca					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55146561	55146561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	65	424	0	ENST00000257290.5:c.2235G>T	p.Met745Ile	p.M745I	ENST00000257290	NM_006206.4	745	atG/atT					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149504379	149504379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	117	392	0	ENST00000261799.4:c.1823C>A	p.Ser608Tyr	p.S608Y	ENST00000261799	NM_002609.3	608	tCt/tAt					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30680106	30680106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	140	511	0	ENST00000376406.3:c.1613T>C	p.Ile538Thr	p.I538T	ENST00000376406	NM_014641.2	538	aTa/aCa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117704571	117704571	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	69	441	0	ENST00000368508.3:c.2405A>G	p.Tyr802Cys	p.Y802C	ENST00000368508	NM_002944.2	802	tAc/tGc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341190	8341190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	61	457	1	ENST00000356435.5:c.5026G>A	p.Val1676Ile	p.V1676I	ENST00000356435		1676	Gtt/Att					NEWRECORD																																																																									
RAD51B	0	MSKCC	GRCh37	14	68331797	68331797	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	77	523	0	ENST00000487270.1:c.393G>T	p.Met131Ile	p.M131I	ENST00000487270	NM_133509.3	131	atG/atT					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779649	3779649	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	111	390	1	ENST00000262367.5:c.5399G>T	p.Arg1800Leu	p.R1800L	ENST00000262367	NM_004380.2	1800	cGg/cTg					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10271060	10271060	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	87	357	0	ENST00000340748.4:c.995C>T	p.Pro332Leu	p.P332L	ENST00000340748		332	cCa/cTa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11134270	11134270	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	117	386	0	ENST00000344626.4:c.2936G>T	p.Arg979Leu	p.R979L	ENST00000344626	NM_003072.3	979	cGa/cTa					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17943652	17943652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	156	454	0	ENST00000458235.1:c.2437G>T	p.Asp813Tyr	p.D813Y	ENST00000458235	NM_000215.3	813	Gac/Tac					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41100992	41100992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	125	409	0	ENST00000373198.4:c.1364T>C	p.Phe455Ser	p.F455S	ENST00000373198	NM_133170.3	455	tTc/tCc					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41740116	41740116	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006663-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	14	97	0	ENST00000242208.4:c.-143-1G>T		p.X48_splice	ENST00000242208	NM_002192.2	48						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	27	431	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93639857	93639857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	27	359	0	ENST00000375746.1:c.1186G>T	p.Val396Leu	p.V396L	ENST00000375746	NM_001174167.1	396	Gtg/Ttg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44870264	44870264	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	18	327	1	ENST00000377967.4:c.443G>T	p.Trp148Leu	p.W148L	ENST00000377967	NM_021140.2	148	tGg/tTg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123197864	123197864	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	15	275	0	ENST00000218089.9:c.1988A>G	p.Asp663Gly	p.D663G	ENST00000218089	NM_001042749.1	663	gAt/gGt					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44922789	44922790	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0008835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	26	252	0	ENST00000377967.4:c.1650_1651del	p.Pro551Ter	p.P551*	ENST00000377967	NM_021140.2	550	gtGCct/gtct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	157	441	0	ENST00000269305.4:c.596G>A	p.Gly199Glu	p.G199E	ENST00000269305	NM_001126112.2	199	gGa/gAa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0009725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	201	271	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	286	544	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16082526	16082526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	71	250	0	ENST00000281043.3:c.340G>A	p.Asp114Asn	p.D114N	ENST00000281043	NM_005378.4	114	Gac/Aac					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437747	52437747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1419	315	725	0	ENST00000460680.1:c.1414G>A	p.Gly472Arg	p.G472R	ENST00000460680	NM_004656.3	472	Ggg/Agg					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47429022	47429022	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	274	522	0	ENST00000377045.4:c.1385C>T	p.Pro462Leu	p.P462L	ENST00000377045	NM_001654.4	462	cCc/cTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	77	417	1	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186503793	186503793	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	407	677	0	ENST00000323963.5:c.470T>G	p.Val157Gly	p.V157G	ENST00000323963		157	gTt/gGt					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134911477	134911477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	476	340	0	ENST00000398015.3:c.1942G>T	p.Val648Leu	p.V648L	ENST00000398015	NM_004441.4	648	Gtg/Ttg					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176707743	176707743	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	701	561	0	ENST00000439151.2:c.5800C>G	p.Gln1934Glu	p.Q1934E	ENST00000439151	NM_022455.4	1934	Cag/Gag					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	401	282	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544756	65544756	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	396	321	0	ENST00000358664.4:c.172-2A>T		p.X58_splice	ENST00000358664	NM_002382.4	58						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	586	454	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2216586	2216586	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	200	528	0	ENST00000398665.3:c.2230G>T	p.Asp744Tyr	p.D744Y	ENST00000398665	NM_032482.2	744	Gac/Tac					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045157	47045157	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	843	600	1	ENST00000329236.7:c.2164G>T	p.Glu722Ter	p.E722*	ENST00000329236	NM_001204466.1	722	Gag/Tag					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65305301	65305301	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	649	880	0	ENST00000342505.4:c.2827del	p.Ile943SerfsTer33	p.I943Sfs*33	ENST00000342505	NM_002227.2	943	Atc/tc					NEWRECORD																																																																									
IDH2	0	MSKCC	GRCh37	15	90631838	90631838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	134	318	0	ENST00000330062.3:c.515G>A	p.Arg172Lys	p.R172K	ENST00000330062	NM_002168.2	172	aGg/aAg					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99452106	99452106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	124	278	0	ENST00000268035.6:c.1440G>T	p.Arg480Ser	p.R480S	ENST00000268035	NM_000875.3	480	agG/agT					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	258	256	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	40	490	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044922	47044922	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	50	206	0	ENST00000329236.7:c.2014G>T	p.Glu672Ter	p.E672*	ENST00000329236	NM_001204466.1	672	Gag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610382	10610382	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	62	484	0	ENST00000171111.5:c.328A>G	p.Met110Val	p.M110V	ENST00000171111	NM_203500.1	110	Atg/Gtg					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123276919	123276919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	70	584	0	ENST00000358487.5:c.998C>T	p.Thr333Ile	p.T333I	ENST00000358487	NM_000141.4	333	aCt/aTt					NEWRECORD																																																																									
EED	0	MSKCC	GRCh37	11	85961491	85961491	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	45	357	0	ENST00000263360.6:c.267+1G>T		p.X89_splice	ENST00000263360	NM_003797.3	89						NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2138543	2138543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	54	535	0	ENST00000219476.3:c.5356C>T	p.Pro1786Ser	p.P1786S	ENST00000219476	NM_000548.3	1786	Cct/Tct					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857496	9857496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	43	377	0	ENST00000330684.3:c.3905T>A	p.Leu1302Gln	p.L1302Q	ENST00000330684	NM_001134407.1	1302	cTa/cAa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	82	499	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0008175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	34	284	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212295773	212295773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	62	625	1	ENST00000342788.4:c.2540G>A	p.Arg847His	p.R847H	ENST00000342788	NM_005235.2	847	cGt/cAt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48581338	48581339	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0008175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	64	385	0	ENST00000342988.3:c.642_643del	p.Pro215GlnfsTer19	p.P215Qfs*19	ENST00000342988	NM_005359.5	214	ttTCcc/ttcc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108188115	108188115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	193	363	0	ENST00000278616.4:c.6214G>A	p.Gly2072Arg	p.G2072R	ENST00000278616	NM_000051.3	2072	Gga/Aga					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180057800	180057800	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0005399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	51	209	0	ENST00000261937.6:c.156-1G>C		p.X52_splice	ENST00000261937	NM_182925.4	52						NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30680572	30680572	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	79	399	0	ENST00000376406.3:c.1147G>T	p.Gly383Cys	p.G383C	ENST00000376406	NM_014641.2	383	Ggc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	608	595	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	347	342	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27094468	27094470	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0005930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	180	292	0	ENST00000324856.7:c.3178_3180delGAG	p.Glu1060del	p.E1060del	ENST00000324856	NM_006015.4	1059	aAGGag/aag					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212989562	212989562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	210	423	0	ENST00000342788.4:c.149G>A	p.Arg50His	p.R50H	ENST00000342788	NM_005235.2	50	cGc/cAc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72830919	72830919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005930-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1475	217	832	2	ENST00000268489.5:c.5662G>A	p.Glu1888Lys	p.E1888K	ENST00000268489	NM_006885.3	1888	Gaa/Aaa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0003416-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			614	393	430	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31021203	31021203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003416-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			984	73	470	0	ENST00000375687.4:c.1202C>T	p.Thr401Ile	p.T401I	ENST00000375687	NM_015338.5	401	aCc/aTc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	42	654	4	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55968580	55968580	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	56	603	1	ENST00000263923.4:c.2083C>A	p.Pro695Thr	p.P695T	ENST00000263923	NM_002253.2	695	Cct/Act					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509624	106509624	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	64	680	0	ENST00000359195.3:c.1618G>T	p.Gly540Trp	p.G540W	ENST00000359195	NM_002649.2	540	Ggg/Tgg					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77066888	77066888	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	45	413	0	ENST00000356341.3:c.598-1G>T		p.X200_splice	ENST00000356341	NM_002576.4	200						NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32954237	32954237	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	55	644	0	ENST00000380152.3:c.9211G>T	p.Glu3071Ter	p.E3071*	ENST00000380152		3071	Gag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29553501	29553501	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	54	575	0	ENST00000358273.4:c.2050C>T	p.Gln684Ter	p.Q684*	ENST00000358273	NM_001042492.2	684	Cag/Tag					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11132477	11132477	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	52	650	0	ENST00000344626.4:c.2693A>G	p.Asn898Ser	p.N898S	ENST00000344626	NM_003072.3	898	aAc/aGc					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31025100	31025100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	62	534	0	ENST00000375687.4:c.4585G>A	p.Gly1529Arg	p.G1529R	ENST00000375687	NM_015338.5	1529	Gga/Aga					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47034416	47034416	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	69	590	0	ENST00000329236.7:c.272-2A>T		p.X91_splice	ENST00000329236	NM_001204466.1	91						NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102196257	102196259	+	missense_variant	Missense_Mutation	ONP	GAG	GAG	AAA			P-0006942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1357	94	812	0	ENST00000263464.3:c.914_916delinsAAA	p.Gly305_Asp306delinsGluAsn	p.G305_D306delinsEN	ENST00000263464	NM_001165.4	305	gGAGat/gAAAat					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	61	382	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	40	410	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41239902	41239902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	24	139	0	ENST00000379561.5:c.448C>T	p.Arg150Cys	p.R150C	ENST00000379561	NM_002015.3	150	Cgc/Tgc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039140	49039140	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	41	265	0	ENST00000267163.4:c.2218A>G	p.Lys740Glu	p.K740E	ENST00000267163	NM_000321.2	740	Aaa/Gaa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306545	41306545	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009698-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	64	380	0	ENST00000373198.4:c.1114C>A	p.Pro372Thr	p.P372T	ENST00000373198	NM_133170.3	372	Ccg/Acg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	65	366	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561423	9561423	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201131316		P-0006771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	135	362	1	ENST00000353224.5:c.359C>T	p.Ala120Val	p.A120V	ENST00000353224	NM_177990.2	120	gCg/gTg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29546065	29546065	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	57	375	1	ENST00000358273.4:c.1570G>T	p.Glu524Ter	p.E524*	ENST00000358273	NM_001042492.2	524	Gaa/Taa					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86675622	86675622	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	49	244	0	ENST00000274376.6:c.2558C>G	p.Ser853Ter	p.S853*	ENST00000274376	NM_002890.2	853	tCa/tGa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29546099	29546099	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	53	350	0	ENST00000358273.4:c.1604A>T	p.Gln535Leu	p.Q535L	ENST00000358273	NM_001042492.2	535	cAg/cTg					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206646599	206646599	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	425	450	0	ENST00000367120.3:c.29A>T	p.His10Leu	p.H10L	ENST00000367120	NM_014002.3	10	cAc/cTc					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153252022	153252022	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0007235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	37	328	0	ENST00000281708.4:c.986-2A>C		p.X329_splice	ENST00000281708	NM_033632.3	329						NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153258954	153258954	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0007235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	14	384	0	ENST00000281708.4:c.861G>C	p.Glu287Asp	p.E287D	ENST00000281708	NM_033632.3	287	gaG/gaC					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589664	67589664	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0007235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	26	206	0	ENST00000274335.5:c.1425+2T>G		p.X475_splice	ENST00000274335		475						NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913035	32913035	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1451	98	853	0	ENST00000380152.3:c.4543A>T	p.Lys1515Ter	p.K1515*	ENST00000380152		1515	Aag/Tag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913388	32913388	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1252	81	829	1	ENST00000380152.3:c.4896T>A	p.Ser1632Arg	p.S1632R	ENST00000380152		1632	agT/agA					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913404	32913404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1281	85	821	0	ENST00000380152.3:c.4912A>G	p.Lys1638Glu	p.K1638E	ENST00000380152		1638	Aaa/Gaa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914197	32914197	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	323	754	0	ENST00000380152.3:c.5705A>C	p.Asp1902Ala	p.D1902A	ENST00000380152		1902	gAt/gCt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041659	42041659	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	642	710	0	ENST00000219905.7:c.5854C>T	p.Gln1952Ter	p.Q1952*	ENST00000219905	NM_001164273.1	1952	Caa/Taa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0007064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	445	373	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215645367	215645367	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	416	409	0	ENST00000260947.4:c.1231C>T	p.Pro411Ser	p.P411S	ENST00000260947	NM_000465.2	411	Ccc/Tcc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	42	261	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	136	320	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100988	27100988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	89	495	0	ENST00000324856.7:c.4270C>G	p.Gln1424Glu	p.Q1424E	ENST00000324856	NM_006015.4	1424	Cag/Gag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101186	27101186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	92	603	0	ENST00000324856.7:c.4468G>A	p.Glu1490Lys	p.E1490K	ENST00000324856	NM_006015.4	1490	Gag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27102121	27102121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	106	643	0	ENST00000324856.7:c.5047G>A	p.Glu1683Lys	p.E1683K	ENST00000324856	NM_006015.4	1683	Gag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106248	27106248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	93	436	0	ENST00000324856.7:c.5859G>C	p.Lys1953Asn	p.K1953N	ENST00000324856	NM_006015.4	1953	aaG/aaC					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128028984	128028984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	174	539	0	ENST00000285398.2:c.1873C>G	p.Gln625Glu	p.Q625E	ENST00000285398	NM_000122.1	625	Cag/Gag					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225362540	225362540	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	30	408	0	ENST00000264414.4:c.1637G>C	p.Arg546Pro	p.R546P	ENST00000264414	NM_003590.4	546	cGa/cCa					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52702616	52702616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	106	394	0	ENST00000394830.3:c.282G>C	p.Leu94Phe	p.L94F	ENST00000394830	NM_018313.4	94	ttG/ttC					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178983	112178983	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	52	333	0	ENST00000257430.4:c.7692G>C	p.Trp2564Cys	p.W2564C	ENST00000257430	NM_000038.5	2564	tgG/tgC					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112179300	112179300	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	98	461	0	ENST00000257430.4:c.8009G>C	p.Arg2670Thr	p.R2670T	ENST00000257430	NM_000038.5	2670	aGa/aCa					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149505128	149505128	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	120	609	0	ENST00000261799.4:c.1687G>C	p.Glu563Gln	p.E563Q	ENST00000261799	NM_002609.3	563	Gag/Cag					NEWRECORD																																																																									
HIST1H3F	0	MSKCC	GRCh37	6	26250824	26250824	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1194	422	1065	3	ENST00000446824.2:c.10A>T	p.Thr4Ser	p.T4S	ENST00000446824	NM_021018.2	4	Acg/Tcg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151835883	151835883	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	101	347	0	ENST00000262189.6:c.14641G>C	p.Glu4881Gln	p.E4881Q	ENST00000262189	NM_170606.2	4881	Gag/Cag					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32456699	32456699	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	27	181	0	ENST00000332351.3:c.193G>T	p.Glu65Ter	p.E65*	ENST00000332351	NM_024426.4	65	Gag/Tag					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64136198	64136198	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	222	589	0	ENST00000334205.4:c.1357G>T	p.Glu453Ter	p.E453*	ENST00000334205	NM_003942.2	453	Gaa/Taa					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12871879	12871879	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	62	113	0	ENST00000228872.4:c.596A>C	p.Ter199SerextTer60	p.*199Sext*60	ENST00000228872	NM_004064.3	199	tAa/tCa					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562277	21562277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	82	613	0	ENST00000382592.4:c.1642C>T	p.Pro548Ser	p.P548S	ENST00000382592	NM_014572.2	548	Ccc/Tcc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32907194	32907194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	49	525	0	ENST00000380152.3:c.1579C>G	p.Pro527Ala	p.P527A	ENST00000380152		527	Cca/Gca					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32929086	32929086	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	86	1019	0	ENST00000380152.3:c.7096C>G	p.Leu2366Val	p.L2366V	ENST00000380152		2366	Ctg/Gtg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645462	67645462	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	56	405	0	ENST00000264010.4:c.727G>A	p.Glu243Lys	p.E243K	ENST00000264010	NM_006565.3	243	Gag/Aag					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17131449	17131449	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	60	294	0	ENST00000285071.4:c.3G>A	p.Met1?	p.M1?	ENST00000285071	NM_144997.5	1	atG/atA					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38512332	38512332	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1229	101	474	0	ENST00000254066.5:c.1243G>C	p.Glu415Gln	p.E415Q	ENST00000254066	NM_000964.3	415	Gag/Cag					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9624791	9624791	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	50	362	0	ENST00000353224.5:c.186C>G	p.Ile62Met	p.I62M	ENST00000353224	NM_177990.2	62	atC/atG					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	189	314	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779782	3779782	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	220	300	0	ENST00000262367.5:c.5266C>T	p.Gln1756Ter	p.Q1756*	ENST00000262367	NM_004380.2	1756	Cag/Tag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47129620	47129623	+	frameshift_variant	Frame_Shift_Del	DEL	AGGT	AGGT	-			P-0006114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	318	387	0	ENST00000409792.3:c.5257_5260del	p.Thr1753ValfsTer14	p.T1753Vfs*14	ENST00000409792	NM_014159.6	1753	ACCTgt/gt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	109	570	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	184	688	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2979407	2979407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	202	718	2	ENST00000396946.4:c.840C>A	p.Asn280Lys	p.N280K	ENST00000396946	NM_032415.4	280	aaC/aaA					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67457304	67457304	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	247	717	0	ENST00000327367.4:c.278G>T	p.Arg93Leu	p.R93L	ENST00000327367	NM_005902.3	93	cGa/cTa					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45368214	45368214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	127	607	0	ENST00000262160.6:c.1388G>T	p.Cys463Phe	p.C463F	ENST00000262160	NM_005901.5	463	tGc/tTc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041703	47041716	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAGACCAAGACA	ACAAGACCAAGACA	-			P-0005102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	154	498	0	ENST00000329236.7:c.1694_1707del	p.His565ArgfsTer25	p.H565Rfs*25	ENST00000329236	NM_001204466.1	565	cACAAGACCAAGACA/c					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	49	314	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190728826	190728826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	28	225	1	ENST00000441310.2:c.2214G>T	p.Met738Ile	p.M738I	ENST00000441310	NM_000534.4	738	atG/atT					NEWRECORD																																																																									
CDKN2B	0	MSKCC	GRCh37	9	22006198	22006198	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	26	290	0	ENST00000276925.6:c.205G>T	p.Gly69Cys	p.G69C	ENST00000276925	NM_004936.3	69	Ggc/Tgc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108186756	108186756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	51	473	0	ENST00000278616.4:c.6114C>G	p.His2038Gln	p.H2038Q	ENST00000278616	NM_000051.3	2038	caC/caG					NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0006615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	400	268	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	345	259	1	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670788	134670788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	179	195	0	ENST00000398015.3:c.699C>A	p.Asp233Glu	p.D233E	ENST00000398015	NM_004441.4	233	gaC/gaA					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	354424	354427	+	frameshift_variant	Frame_Shift_Del	DEL	CGGC	CGGC	-			P-0006615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	375	298	1	ENST00000262320.3:c.1131_1134delGCCG	p.Pro378ArgfsTer35	p.P378Rfs*35	ENST00000262320	NM_003502.3	377	gtGCCG/gt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577054	7577054	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006615-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	406	304	0	ENST00000269305.4:c.884delC	p.Pro295LeufsTer50	p.P295Lfs*50	ENST00000269305	NM_001126112.2	295	cCt/ct					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	250	397	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52443604	52443623	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CCACTTGCACCCCCTTGACA	CCACTTGCACCCCCTTGACA	-			P-0007394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	251	278	0	ENST00000460680.1:c.69_88del	p.Val24GlyfsTer38	p.V24Gfs*38	ENST00000460680	NM_004656.3	23	ggTGTCAAGGGGGTGCAAGTGGag/ggag					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53223347	53223347	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	130	246	0	ENST00000375401.3:c.4012G>T	p.Glu1338Ter	p.E1338*	ENST00000375401	NM_004187.3	1338	Gag/Tag					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183799	10183799	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006550-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	108	228	0	ENST00000256474.2:c.269del	p.Asn90ThrfsTer69	p.N90Tfs*69	ENST00000256474	NM_000551.3	90	Aac/ac					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	757	210	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099851	27099851	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	307	270	0	ENST00000324856.7:c.3730C>G	p.Pro1244Ala	p.P1244A	ENST00000324856	NM_006015.4	1244	Ccc/Gcc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151868348	151868348	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	503	332	1	ENST00000262189.6:c.9453+1G>A		p.X3151_splice	ENST00000262189	NM_170606.2	3151						NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108213948	108213948	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	239	248	0	ENST00000278616.4:c.8269-1G>A		p.X2757_splice	ENST00000278616	NM_000051.3	2757						NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47699369	47699369	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	455	497	0	ENST00000347630.2:c.139G>T	p.Glu47Ter	p.E47*	ENST00000347630	NM_001007230.1	47	Gaa/Taa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29528172	29528173	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0007627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	372	331	0	ENST00000358273.4:c.1181_1182del	p.Phe394Ter	p.F394*	ENST00000358273	NM_001042492.2	394	TTt/t					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	445	478	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48953730	48953730	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs3092891		P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	119	293	1	ENST00000267163.4:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000267163	NM_000321.2	445	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112179737	112179737	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	193	278	1	ENST00000257430.4:c.8446C>T	p.Arg2816Ter	p.R2816*	ENST00000257430	NM_000038.5	2816	Cga/Tga					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176722141	176722141	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	218	247	0	ENST00000439151.2:c.7772C>T	p.Ala2591Val	p.A2591V	ENST00000439151	NM_022455.4	2591	gCa/gTa					NEWRECORD																																																																									
HIST1H3G	0	MSKCC	GRCh37	6	26271314	26271314	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1410	694	970	0	ENST00000305910.3:c.299A>G	p.Tyr100Cys	p.Y100C	ENST00000305910	NM_003534.2	100	tAc/tGc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2954915	2954915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	342	384	1	ENST00000396946.4:c.2795G>A	p.Arg932Gln	p.R932Q	ENST00000396946	NM_032415.4	932	cGg/cAg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55223555	55223555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	328	410	1	ENST00000275493.2:c.922G>A	p.Val308Ile	p.V308I	ENST00000275493	NM_005228.3	308	Gtc/Atc					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148516750	148516750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	179	268	0	ENST00000320356.2:c.937C>T	p.Arg313Trp	p.R313W	ENST00000320356	NM_004456.4	313	Cgg/Tgg					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98212182	98212182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1418	99	403	0	ENST00000331920.6:c.3490G>A	p.Val1164Ile	p.V1164I	ENST00000331920	NM_000264.3	1164	Gtt/Att					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64127817	64127817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	156	159	0	ENST00000334205.4:c.310G>A	p.Ala104Thr	p.A104T	ENST00000334205	NM_003942.2	104	Gct/Act					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49033971	49033971	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	371	276	0	ENST00000267163.4:c.2106+2T>C		p.X702_splice	ENST00000267163	NM_000321.2	702						NEWRECORD																																																																									
GREM1	0	MSKCC	GRCh37	15	33022899	33022899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	342	715	0	ENST00000300177.4:c.8G>A	p.Arg3His	p.R3H	ENST00000300177	NM_001191322.1	3	cGc/cAc					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	338166	338166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1489	451	532	4	ENST00000262320.3:c.2545G>A	p.Val849Ile	p.V849I	ENST00000262320	NM_003502.3	849	Gtc/Atc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76907651	76907651	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	610	777	2	ENST00000373344.5:c.4510C>T	p.Arg1504Ter	p.R1504*	ENST00000373344	NM_000489.3	1504	Cga/Tga					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100630266	100630266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	370	389	0	ENST00000308731.7:c.7G>A	p.Ala3Thr	p.A3T	ENST00000308731	NM_000061.2	3	Gca/Aca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	83	370	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952100	178952100	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	27	433	1	ENST00000263967.3:c.3155C>A	p.Thr1052Lys	p.T1052K	ENST00000263967	NM_006218.2	1052	aCa/aAa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	248	436	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	76	425	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112103088	112103088	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	82	379	0	ENST00000257430.4:c.422+1G>A		p.X141_splice	ENST00000257430	NM_000038.5	141						NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643771	52643771	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	108	473	0	ENST00000394830.3:c.2125del	p.Ile709PhefsTer5	p.I709Ffs*5	ENST00000394830	NM_018313.4	709	Att/tt					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138200380	138200380	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	111	302	0	ENST00000237289.4:c.1798G>C	p.Asp600His	p.D600H	ENST00000237289	NM_001270507.1	600	Gac/Cac					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10599876	10599879	+	frameshift_variant	Frame_Shift_Del	DEL	TAGA	TAGA	-			P-0005871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	297	599	0	ENST00000171111.5:c.1697_1700delTCTA	p.Ile566ThrfsTer28	p.I566Tfs*28	ENST00000171111	NM_203500.1	566	aTCTAc/ac					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37879601	37879602	+	missense_variant	Missense_Mutation	DNP	TT	TT	AG			P-0005871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	174	296	0	ENST00000269571.5:c.1976_1977delinsAG	p.Val659Glu	p.V659E	ENST00000269571		659	gTT/gAG					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72058535	72058535	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1394	464	737	0	ENST00000357731.5:c.905A>G	p.Lys302Arg	p.K302R	ENST00000357731	NM_173808.2	302	aAg/aGg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248599	212248599	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	147	416	0	ENST00000342788.4:c.3668A>C	p.Lys1223Thr	p.K1223T	ENST00000342788	NM_005235.2	1223	aAg/aCg					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55970840	55970840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	132	478	0	ENST00000263923.4:c.1957C>T	p.His653Tyr	p.H653Y	ENST00000263923	NM_002253.2	653	Cat/Tat					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88799344	88799344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	82	482	0	ENST00000360948.2:c.41G>A	p.Arg14Gln	p.R14Q	ENST00000360948	NM_001012338.2	14	cGg/cAg					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56878430	56878430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1201	188	591	0	ENST00000308159.5:c.2369G>A	p.Arg790His	p.R790H	ENST00000308159	NM_014669.4	790	cGc/cAc					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111885570	111885606	+	frameshift_variant	Frame_Shift_Del	DEL	GTGCGGCGCCGCCTGTGATGTCCGGCTCTCCAGCTAC	GTGCGGCGCCGCCTGTGATGTCCGGCTCTCCAGCTAC	-			P-0005899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1718	250	804	0	ENST00000341259.2:c.1350_1386delCGGCGCCGCCTGTGATGTCCGGCTCTCCAGCTACGTG	p.Cys450TrpfsTer2	p.C450Wfs*2	ENST00000341259	NM_005475.2	449	gaGTGCGGCGCCGCCTGTGATGTCCGGCTCTCCAGCTAC/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578423	7579121	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTTGTATTTTTTTGTAGAGACGAGGTTTCATCATGTTACCCAGGCTGGTCTTGAACTCCTGGGCTCAGGTGATCTGCCTGCCTTGGCCTCTTTGAGAGTGCTGGGATTGCAGGTGTGAGCCACCAAGCCTGGTCAGGAGCTTATTTTCAAAAGCCAAGGAATACACGTGGATGAAGAAAAAGAAAAGTTCTGCATCCCCAGGAGAGATGCTGAGGGTGTGATGGGATGGATAAAAGCCCA	CATGTGCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCAGCAAAGAAACAAACATGCGTAAGCACCTCCTGCAACCCACTAGCGAGCTAGAGAGAGTTGGCGTCTACACCTCAGGAGCTTTTCTTTTTTTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTCACTCAGGCTGGAGCACAGTGGTGTGATCACAGCTCACTGCAGCCTCCATCTCCTGGCCTCAAGTGATCTTCCCACCTCAGCCTCCTAAGTGGCTGGGACTATAGGTGTGCACCACCATGCCTGGCTAATTTTTTGTATTTTTTTGTAGAGACGAGGTTTCATCATGTTACCCAGGCTGGTCTTGAACTCCTGGGCTCAGGTGATCTGCCTGCCTTGGCCTCTTTGAGAGTGCTGGGATTGCAGGTGTGAGCCACCAAGCCTGGTCAGGAGCTTATTTTCAAAAGCCAAGGAATACACGTGGATGAAGAAAAAGAAAAGTTCTGCATCCCCAGGAGAGATGCTGAGGGTGTGATGGGATGGATAAAAGCCCA	-			P-0005899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	213	344	1	ENST00000269305.4:c.507_375+191delTGGGCTTTTATCCATCCCATCACACCCTCAGCATCTCTCCTGGGGATGCAGAACTTTTCTTTTTCTTCATCCACGTGTATTCCTTGGCTTTTGAAAATAAGCTCCTGACCAGGCTTGGTGGCTCACACCTGCAATCCCAGCACTCTCAAAGAGGCCAAGGCAGGCAGATCACCTGAGCCCAGGAGTTCAAGACCAGCCTGGGTAACATGATGAAACCTCGTCTCTACAAAAAAATACAAAAAATTAGCCAGGCATGGTGGTGCACACCTATAGTCCCAGCCACTTAGGAGGCTGAGGTGGGAAGATCACTTGAGGCCAGGAGATGGAGGCTGCAGTGAGCTGTGATCACACCACTGTGCTCCAGCCTGAGTGACAGAGCAAGACCCTATCTCAAAAAAAAAAAAAAAAAAGAAAAGCTCCTGAGGTGTAGACGCCAACTCTCTCTAGCTCGCTAGTGGGTTGCAGGAGGTGCTTACGCATGTTTGTTTCTTTGCTGCCGTCTTCCAGTTGCTTTATCTGTTCACTTGTGCCCTGACTTTCAACTCTGTCTCCTTCCTCTTCCTACAGTACTCCCCTGCCCTCAACAAGATGTTTTGCCAACTGGCCAAGACCTGCCCTGTGCAGCTGTGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATG		p.X169_splice	ENST00000269305	NM_001126112.2	169						NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45799113	45799118	+	inframe_deletion	In_Frame_Del	DEL	TCTTGG	TCTTGG	-			P-0005899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	162	468	0	ENST00000372115.3:c.273_278delCCAAGA	p.Asp91_Gln92del	p.D91_Q92del	ENST00000372115	NM_001048171.1	91	gaCCAAGAg/gag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	394	464	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67644775	67644775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	335	442	0	ENST00000264010.4:c.40G>A	p.Glu14Lys	p.E14K	ENST00000264010	NM_006565.3	14	Gaa/Aaa					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1271291	1271291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2079	433	493	1	ENST00000310581.5:c.2411G>T	p.Gly804Val	p.G804V	ENST00000310581	NM_198253.2	804	gGc/gTc					NEWRECORD																																																																									
RAD51B	0	MSKCC	GRCh37	14	68934953	68934953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	192	346	0	ENST00000487270.1:c.1022G>T	p.Gly341Val	p.G341V	ENST00000487270	NM_133509.3	341	gGc/gTc					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14021913	14021913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	139	318	0	ENST00000311895.7:c.613G>A	p.Glu205Lys	p.E205K	ENST00000311895	NM_005236.2	205	Gaa/Aaa					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435132	56435132	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	178	366	0	ENST00000407977.2:c.2005C>G	p.Pro669Ala	p.P669A	ENST00000407977		669	Ccc/Gcc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610505	10610505	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	417	396	0	ENST00000171111.5:c.205G>T	p.Glu69Ter	p.E69*	ENST00000171111	NM_203500.1	69	Gag/Tag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31024572	31024572	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	329	335	1	ENST00000375687.4:c.4057A>T	p.Arg1353Trp	p.R1353W	ENST00000375687	NM_015338.5	1353	Agg/Tgg					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105240257	105240315	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CGTTGGCGTACTCCATGACAAAGCAGAGGCGGTCGTGGGTCTGGAAAGAGTACTTCAGG	CGTTGGCGTACTCCATGACAAAGCAGAGGCGGTCGTGGGTCTGGAAAGAGTACTTCAGG	-			P-0007067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1376	83	450	0	ENST00000349310.3:c.636_694del	p.Leu213GlyfsTer24	p.L213Gfs*24	ENST00000349310	NM_001014432.1	212	gcCCTGAAGTACTCTTTCCAGACCCACGACCGCCTCTGCTTTGTCATGGAGTACGCCAACGgg/gcgg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	350	586	6	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173830	112173830	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	120	342	0	ENST00000257430.4:c.2539G>T	p.Glu847Ter	p.E847*	ENST00000257430	NM_000038.5	847	Gaa/Taa					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135771821	135771821	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	116	621	0	ENST00000298552.3:c.3296A>G	p.Lys1099Arg	p.K1099R	ENST00000298552	NM_001162426.1	1099	aAg/aGg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68857396	68857396	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	85	460	0	ENST00000261769.5:c.2031A>C	p.Gln677His	p.Q677H	ENST00000261769	NM_004360.3	677	caA/caC					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604715	48604715	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	186	414	0	ENST00000342988.3:c.1537T>C	p.Tyr513His	p.Y513H	ENST00000342988	NM_005359.5	513	Tac/Cac					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10251528	10251528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	87	472	0	ENST00000340748.4:c.3404A>C	p.Lys1135Thr	p.K1135T	ENST00000340748		1135	aAg/aCg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042300	42042301	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0008079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	77	856	1	ENST00000219905.7:c.6499_6500del	p.Leu2167GlyfsTer27	p.L2167Gfs*27	ENST00000219905	NM_001164273.1	2165	gaCTct/gact					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	337	345	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	178	490	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248481	212248481	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	170	608	1	ENST00000342788.4:c.3786C>A	p.Tyr1262Ter	p.Y1262*	ENST00000342788	NM_005235.2	1262	taC/taA					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8504347	8504347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	136	477	0	ENST00000356435.5:c.1736G>T	p.Ser579Ile	p.S579I	ENST00000356435		579	aGc/aTc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133219437	133219437	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	147	589	0	ENST00000320574.5:c.4697G>T	p.Arg1566Ile	p.R1566I	ENST00000320574	NM_006231.2	1566	aGa/aTa					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67457600	67457600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	95	328	0	ENST00000327367.4:c.410C>T	p.Pro137Leu	p.P137L	ENST00000327367	NM_005902.3	137	cCt/cTt					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410352	63410352	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	196	627	0	ENST00000330258.3:c.2815G>T	p.Glu939Ter	p.E939*	ENST00000330258	NM_152424.3	939	Gaa/Taa					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15365032	15365033	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0007170-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	243	474	0	ENST00000263377.2:c.2088_2089delinsTT	p.Lys696_Gly697delinsAsnCys	p.K696_G697delinsNC	ENST00000263377	NM_058243.2	696	aaGGgc/aaTTgc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55974019	55974019	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	39	333	0	ENST00000263923.4:c.1297G>T	p.Asp433Tyr	p.D433Y	ENST00000263923	NM_002253.2	433	Gat/Tat					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176562300	176562300	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	56	493	0	ENST00000439151.2:c.196C>G	p.Pro66Ala	p.P66A	ENST00000439151	NM_022455.4	66	Cca/Gca					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81972439	81972439	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009147-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	96	866	1	ENST00000359376.3:c.3232C>T	p.Arg1078Ter	p.R1078*	ENST00000359376	NM_002661.3	1078	Cga/Tga					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69990481	69990481	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs201247895		P-0004728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	318	271	0	ENST00000352241.4:c.761C>T	p.Thr254Met	p.T254M	ENST00000352241	NM_198159.2	254	aCg/aTg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	201	690	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39775569	39775569	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	210	448	0	ENST00000288319.7:c.451G>C	p.Gly151Arg	p.G151R	ENST00000288319	NM_182918.3	151	Ggc/Cgc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175498	112175498	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	175	437	0	ENST00000257430.4:c.4207del	p.Ser1403AlafsTer12	p.S1403Afs*12	ENST00000257430	NM_000038.5	1403	Agc/gc					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25967012	25967013	+	frameshift_variant	Frame_Shift_Ins	INS	-	-	CCAGTTCCAGTGTGGGGCCCTTT			P-0006721-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	80	503	0	ENST00000435504.4:c.2193_2194insAAAGGGCCCCACACTGGAACTGG	p.Ala732LysfsTer75	p.A732Kfs*75	ENST00000435504		731	-/AAAGGGCCCCACACTGGAACTGG					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108199963	108199963	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	139	282	0	ENST00000278616.4:c.7305C>A	p.Asn2435Lys	p.N2435K	ENST00000278616	NM_000051.3	2435	aaC/aaA					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212566817	212566817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	77	307	0	ENST00000342788.4:c.1364C>A	p.Ala455Glu	p.A455E	ENST00000342788	NM_005235.2	455	gCa/gAa					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81355298	81355298	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	106	324	0	ENST00000222390.5:c.1076G>T	p.Gly359Val	p.G359V	ENST00000222390	NM_000601.4	359	gGg/gTg					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90993072	90993072	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	44	185	0	ENST00000265433.3:c.370G>C	p.Gly124Arg	p.G124R	ENST00000265433	NM_002485.4	124	Ggg/Cgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	89	252	0	ENST00000269305.4:c.454C>A	p.Pro152Thr	p.P152T	ENST00000269305	NM_001126112.2	152	Ccg/Acg					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18266835	18266835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	39	126	0	ENST00000222254.8:c.146G>C	p.Arg49Pro	p.R49P	ENST00000222254	NM_005027.3	49	cGc/cCc					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45651210	45651210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	71	253	0	ENST00000407780.3:c.815C>A	p.Ala272Asp	p.A272D	ENST00000407780	NM_001283052.1	272	gCc/gAc					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48650778	48650778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	109	409	2	ENST00000376670.3:c.647G>T	p.Arg216Leu	p.R216L	ENST00000376670	NM_002049.3	216	cGg/cTg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	1057	676	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0007120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	548	600	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591898	48591898	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	931	594	0	ENST00000342988.3:c.1061T>G	p.Val354Gly	p.V354G	ENST00000342988	NM_005359.5	354	gTg/gGg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0006002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	87	352	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578415	7578415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006002-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	74	397	0	ENST00000269305.4:c.515T>A	p.Val172Asp	p.V172D	ENST00000269305	NM_001126112.2	172	gTt/gAt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	131	363	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98224209	98224209	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	68	397	0	ENST00000331920.6:c.2632G>C	p.Asp878His	p.D878H	ENST00000331920	NM_000264.3	878	Gac/Cac					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100996803	100996803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1470	138	781	1	ENST00000325455.5:c.1724C>T	p.Ser575Leu	p.S575L	ENST00000325455	NM_001202474.3	575	tCa/tTa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0005457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	869	567	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100998862	100998862	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	230	618	0	ENST00000325455.5:c.940G>A	p.Ala314Thr	p.A314T	ENST00000325455	NM_001202474.3	314	Gcc/Acc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49415870	49415870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	1358	473	0	ENST00000301067.7:c.16477A>G	p.Lys5493Glu	p.K5493E	ENST00000301067	NM_003482.3	5493	Aaa/Gaa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142238539	142238544	+	inframe_deletion	In_Frame_Del	DEL	CCCGAA	CCCGAA	-			P-0005457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	397	346	0	ENST00000350721.4:c.4349_4354del	p.Val1450_Arg1451del	p.V1450_R1451del	ENST00000350721	NM_001184.3	1450	gTTCGGGaa/gaa					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0007786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	21	177	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	37	324	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	43	373	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187521400	187521400	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	40	284	0	ENST00000441802.2:c.11755A>T	p.Asn3919Tyr	p.N3919Y	ENST00000441802	NM_005245.3	3919	Aat/Tat					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061481	38061481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	24	254	0	ENST00000250448.2:c.508A>G	p.Lys170Glu	p.K170E	ENST00000250448	NM_004496.3	170	Aag/Gag					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102869434	102869434	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	364	531	0	ENST00000307046.8:c.207G>C	p.Arg69Ser	p.R69S	ENST00000307046	NM_001111285.1	69	agG/agC					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42003270	42003270	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	335	1132	0	ENST00000219905.7:c.2807A>G	p.Asp936Gly	p.D936G	ENST00000219905	NM_001164273.1	936	gAt/gGt					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17942040	17942040	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	228	686	0	ENST00000458235.1:c.2975T>C	p.Phe992Ser	p.F992S	ENST00000458235	NM_000215.3	992	tTc/tCc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939373	76939373	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	466	445	3	ENST00000373344.5:c.1375A>T	p.Lys459Ter	p.K459*	ENST00000373344	NM_000489.3	459	Aag/Tag					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5078403	5078403	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	24	293	0	ENST00000381652.3:c.2090T>G	p.Leu697Arg	p.L697R	ENST00000381652	NM_004972.3	697	cTt/cGt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180058748	180058748	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	227	329	1	ENST00000261937.6:c.89delC	p.Pro30ArgfsTer3	p.P30Rfs*3	ENST00000261937	NM_182925.4	30	cCg/cg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27089554	27089554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	112	414	2	ENST00000324856.7:c.2510C>T	p.Ala837Val	p.A837V	ENST00000324856	NM_006015.4	837	gCc/gTc					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65305328	65305328	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	278	583	0	ENST00000342505.4:c.2800C>T	p.His934Tyr	p.H934Y	ENST00000342505	NM_002227.2	934	Cat/Tat					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206666608	206666608	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	195	341	0	ENST00000367120.3:c.1942G>T	p.Glu648Ter	p.E648*	ENST00000367120	NM_014002.3	648	Gag/Tag					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61719588	61719588	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	101	377	0	ENST00000401558.2:c.1595G>C	p.Arg532Thr	p.R532T	ENST00000401558	NM_003400.3	532	aGa/aCa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55152080	55152080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	77	388	0	ENST00000257290.5:c.2512G>A	p.Gly838Ser	p.G838S	ENST00000257290	NM_006206.4	838	Ggc/Agc					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	149997485	149997485	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	94	333	0	ENST00000253339.5:c.2794G>C	p.Asp932His	p.D932H	ENST00000253339		932	Gat/Cat					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81374320	81374320	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	130	326	0	ENST00000222390.5:c.742G>A	p.Glu248Lys	p.E248K	ENST00000222390	NM_000601.4	248	Gaa/Aaa					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118367074	118367074	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	42	265	0	ENST00000534358.1:c.5656A>T	p.Ser1886Cys	p.S1886C	ENST00000534358	NM_005933.3	1886	Agt/Tgt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444726	49444726	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	114	286	0	ENST00000301067.7:c.2740G>T	p.Glu914Ter	p.E914*	ENST00000301067	NM_003482.3	914	Gag/Tag					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	756598	756598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2650	217	391	0	ENST00000314574.4:c.230C>T	p.Ser77Leu	p.S77L	ENST00000314574	NM_005433.3	77	tCa/tTa					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42799281	42799281	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	82	135	0	ENST00000575354.2:c.4765G>C	p.Glu1589Gln	p.E1589Q	ENST00000575354	NM_015125.3	1589	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578264	7578265	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0009253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	399	459	1	ENST00000269305.4:c.584_585delinsAA	p.Ile195Lys	p.I195K	ENST00000269305	NM_001126112.2	195	aTC/aAA					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175303	112175303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913327		P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	71	214	0	ENST00000257430.4:c.4012C>T	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1338	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	184	259	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	68	265	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40980849	40980849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	292	327	0	ENST00000373198.4:c.1637G>A	p.Arg546Gln	p.R546Q	ENST00000373198	NM_133170.3	546	cGg/cAg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16259729	16259729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	141	334	0	ENST00000375759.3:c.6994C>T	p.Arg2332Cys	p.R2332C	ENST00000375759	NM_015001.2	2332	Cgc/Tgc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2958190	2958190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	167	334	0	ENST00000396946.4:c.2542C>T	p.Arg848Cys	p.R848C	ENST00000396946	NM_032415.4	848	Cgc/Tgc					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467763	50467763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	72	279	0	ENST00000331340.3:c.998C>T	p.Thr333Met	p.T333M	ENST00000331340	NM_006060.4	333	aCg/aTg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678541	88678541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145157285		P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	61	220	0	ENST00000360948.2:c.995C>T	p.Thr332Met	p.T332M	ENST00000360948	NM_001012338.2	332	aCg/aTg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584605	48584612	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TACCATCA	TACCATCA	-			P-0009362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	36	297	0	ENST00000342988.3:c.780_787del	p.Tyr260Ter	p.Y260*	ENST00000342988	NM_005359.5	260	TACCATCAt/t					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	41	295	1				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	70	561	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81925131	81925131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	36	889	0	ENST00000359376.3:c.922G>A	p.Ala308Thr	p.A308T	ENST00000359376	NM_002661.3	308	Gcg/Acg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391922	139391932	+	frameshift_variant	Frame_Shift_Del	DEL	GTGATGTCCCG	GTGATGTCCCG	-			P-0009754-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	63	918	0	ENST00000277541.6:c.6259_6269del	p.Arg2087GlyfsTer177	p.R2087Gfs*177	ENST00000277541	NM_017617.3	2087	CGGGACATCACg/g					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	113	403	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0009860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	130	337	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	138	504	3	ENST00000342988.3:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000342988	NM_005359.5	351	Gat/Aat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	97	374	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	366	572	1	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc					NEWRECORD																																																																									
TNFRSF14	0	MSKCC	GRCh37	1	2494680	2494680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1288	86	503	1	ENST00000355716.4:c.820C>T	p.Pro274Ser	p.P274S	ENST00000355716	NM_003820.2	274	Ccc/Tcc					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	348185	348185	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	216	406	2	ENST00000262320.3:c.1321G>T	p.Ala441Ser	p.A441S	ENST00000262320	NM_003502.3	441	Gcc/Tcc					NEWRECORD																																																																									
PDPK1	0	MSKCC	GRCh37	16	2647164	2647164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	276	520	2	ENST00000342085.4:c.1442G>T	p.Gly481Val	p.G481V	ENST00000342085	NM_002613.4	481	gGa/gTa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207020	1207020	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	277	491	0	ENST00000326873.7:c.108C>G	p.Tyr36Ter	p.Y36*	ENST00000326873	NM_000455.4	36	taC/taG					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610343	10610343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	360	562	0	ENST00000171111.5:c.367G>T	p.Val123Leu	p.V123L	ENST00000171111	NM_203500.1	123	Gtg/Ttg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546799	9546799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	317	544	0	ENST00000353224.5:c.1223C>A	p.Ser408Tyr	p.S408Y	ENST00000353224	NM_177990.2	408	tCc/tAc					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50468103	50468104	+	missense_variant	Missense_Mutation	DNP	GG	GG	TC			P-0005849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	252	399	1	ENST00000331340.3:c.1338_1339delinsTC	p.Gln446_Asp447delinsHisHis	p.Q446_D447delinsHH	ENST00000331340	NM_006060.4	446	caGGac/caTCac					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	742	472	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0009474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	623	317	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55151564	55151564	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	150	401	0	ENST00000257290.5:c.2350G>C	p.Asp784His	p.D784H	ENST00000257290	NM_006206.4	784	Gat/Cat					NEWRECORD																																																																									
NSD1	64324	MSKCC	GRCh37	5	176638885	176638885	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	481	378	1	ENST00000439151.2:c.3485G>A	p.Arg1162His	p.R1162H	ENST00000439151	NM_022455.4	1162	cGt/cAt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15973698	15973698	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	455	314	0	ENST00000268712.3:c.4294C>G	p.Arg1432Gly	p.R1432G	ENST00000268712	NM_006311.3	1432	Cgg/Ggg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	39	423	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163606	32163606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	21	331	0	ENST00000375023.3:c.5620G>A	p.Gly1874Arg	p.G1874R	ENST00000375023	NM_004557.3	1874	Gga/Aga					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738828	145738828	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201883228		P-0009841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	52	235	3	ENST00000428558.2:c.2237C>T	p.Ala746Val	p.A746V	ENST00000428558	NM_004260.3	746	gCg/gTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	78	484	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	199	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	248	595	1	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306569	41306569	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	158	595	1	ENST00000373198.4:c.1090C>T	p.Arg364Ter	p.R364*	ENST00000373198	NM_133170.3	364	Cga/Tga					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11177096	11177096	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1273	281	761	0	ENST00000361445.4:c.6981G>C	p.Met2327Ile	p.M2327I	ENST00000361445	NM_004958.3	2327	atG/atC					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212293209	212293209	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	188	296	0	ENST00000342788.4:c.2644-1G>T		p.X882_splice	ENST00000342788	NM_005235.2	882						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174152	112174152	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0006559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	192	511	0	ENST00000257430.4:c.2861T>G	p.Leu954Ter	p.L954*	ENST00000257430	NM_000038.5	954	tTa/tGa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0009172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	131	383	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	162	495	0	ENST00000269305.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000269305	NM_001126112.2	278	cCt/cTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	62	446	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	28	625	2	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	31	262	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	31	262	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	31	262	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591904	48591904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	34	705	0	ENST00000342988.3:c.1067C>T	p.Pro356Leu	p.P356L	ENST00000342988	NM_005359.5	356	cCt/cTt					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125496704	125496704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	78	600	1	ENST00000428830.2:c.41C>A	p.Thr14Asn	p.T14N	ENST00000428830	NM_001114121.2	14	aCc/aAc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134977852	134977852	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0004709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	248	756	0	ENST00000398015.3:c.2847-2A>G		p.X949_splice	ENST00000398015	NM_004441.4	949						NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12022498	12022498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	123	947	0	ENST00000396373.4:c.604C>T	p.Arg202Trp	p.R202W	ENST00000396373	NM_001987.4	202	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	263	652	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220494	1220494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	187	753	0	ENST00000326873.7:c.587G>T	p.Gly196Val	p.G196V	ENST00000326873	NM_000455.4	196	gGc/gTc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602332	10602332	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	220	977	0	ENST00000171111.5:c.1246A>T	p.Ile416Phe	p.I416F	ENST00000171111	NM_203500.1	416	Atc/Ttc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30142886	30142886	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	194	666	0	ENST00000389048.3:c.640del	p.Arg214AlafsTer35	p.R214Afs*35	ENST00000389048	NM_004304.4	214	Cgc/gc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579513	7579519	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGTCT	TGGGTCT	-			P-0004709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	290	898	0	ENST00000269305.4:c.168_174del	p.Asp57ValfsTer64	p.D57Vfs*64	ENST00000269305	NM_001126112.2	56	gaAGACCCA/ga					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30730004	30730004	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0008004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	33	171	0	ENST00000359013.4:c.1599+1G>A		p.X533_splice	ENST00000359013	NM_001024847.2	533						NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1219351	1219358	+	frameshift_variant	Frame_Shift_Del	DEL	GGCATGCA	GGCATGCA	-			P-0008004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	75	376	0	ENST00000326873.7:c.405_412delCATGCAGG	p.Met136AsnfsTer24	p.M136Nfs*24	ENST00000326873	NM_000455.4	135	GGCATGCAg/g					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	175	296	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	261	430	0	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108218084	108218084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	72	246	0	ENST00000278616.4:c.8663T>C	p.Ile2888Thr	p.I2888T	ENST00000278616	NM_000051.3	2888	aTa/aCa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89468494	89468494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	122	356	0	ENST00000336596.2:c.2028G>T	p.Gln676His	p.Q676H	ENST00000336596	NM_005233.5	676	caG/caT					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13971126	13971126	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	131	168	0	ENST00000405192.2:c.802+1G>T		p.X268_splice	ENST00000405192	NM_001163147.1	268						NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760981	133760981	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	301	410	0	ENST00000318560.5:c.3304G>T	p.Ala1102Ser	p.A1102S	ENST00000318560	NM_005157.4	1102	Gcg/Tcg					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43612054	43612054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	386	597	0	ENST00000355710.3:c.2159C>T	p.Pro720Leu	p.P720L	ENST00000355710	NM_020975.4	720	cCt/cTt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108199763	108199763	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	171	234	0	ENST00000278616.4:c.7105G>T	p.Gly2369Ter	p.G2369*	ENST00000278616	NM_000051.3	2369	Gga/Tga					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3900321	3900321	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	261	364	0	ENST00000262367.5:c.775G>T	p.Ala259Ser	p.A259S	ENST00000262367	NM_004380.2	259	Gca/Tca					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412676	63412676	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	166	395	0	ENST00000330258.3:c.491A>T	p.Lys164Met	p.K164M	ENST00000330258	NM_152424.3	164	aAg/aTg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151880169	151880169	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	111	342	0	ENST00000262189.6:c.5155C>T	p.Gln1719Ter	p.Q1719*	ENST00000262189	NM_170606.2	1719	Cag/Tag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151880175	151880175	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	104	332	0	ENST00000262189.6:c.5149A>G	p.Lys1717Glu	p.K1717E	ENST00000262189	NM_170606.2	1717	Aaa/Gaa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	131	334	0	ENST00000250448.2:c.740A>T	p.His247Leu	p.H247L	ENST00000250448	NM_004496.3	247	cAc/cTc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	12	273	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	87	732	2	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	60	296	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	65	526	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	67	273	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0008792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	432	430	1	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577079	7577079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	65	665	1	ENST00000269305.4:c.859G>A	p.Glu287Lys	p.E287K	ENST00000269305	NM_001126112.2	287	Gag/Aag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022297	31022297	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	420	749	0	ENST00000375687.4:c.1786del	p.Arg596GlyfsTer107	p.R596Gfs*107	ENST00000375687	NM_015338.5	594	tgC/tg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643707	52643707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	122	396	0	ENST00000394830.3:c.2189T>C	p.Met730Thr	p.M730T	ENST00000394830	NM_018313.4	730	aTg/aCg					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106196871	106196871	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	265	559	0	ENST00000380013.4:c.5204G>A	p.Gly1735Glu	p.G1735E	ENST00000380013	NM_001127208.2	1735	gGa/gAa					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131915715	131915715	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	342	572	0	ENST00000265335.6:c.713A>T	p.Lys238Met	p.K238M	ENST00000265335		238	aAg/aTg					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145737084	145737084	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	259	549	0	ENST00000428558.2:c.3482C>G	p.Ala1161Gly	p.A1161G	ENST00000428558	NM_004260.3	1161	gCc/gGc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484375	8484375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	77	365	1	ENST00000356435.5:c.3157C>G	p.Leu1053Val	p.L1053V	ENST00000356435		1053	Ctt/Gtt					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66519909	66519909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	357	484	1	ENST00000358598.2:c.392C>T	p.Ala131Val	p.A131V	ENST00000358598	NM_212471.2	131	gCc/gTc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943665	66943665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	242	442	0	ENST00000374690.3:c.2745C>G	p.Ile915Met	p.I915M	ENST00000374690	NM_000044.3	915	atC/atG					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120491716	120491716	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	42	394	0	ENST00000256646.2:c.2513C>T	p.Ser838Phe	p.S838F	ENST00000256646	NM_024408.3	838	tCc/tTc					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206666650	206666650	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	70	414	0	ENST00000367120.3:c.1984C>T	p.Gln662Ter	p.Q662*	ENST00000367120	NM_014002.3	662	Cag/Tag					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25966508	25966508	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	93	526	0	ENST00000435504.4:c.2698C>T	p.Pro900Ser	p.P900S	ENST00000435504		900	Cct/Tct					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29473971	29473971	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	68	371	0	ENST00000389048.3:c.2204G>A	p.Ser735Asn	p.S735N	ENST00000389048	NM_004304.4	735	aGc/aAc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29473990	29473990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	81	419	2	ENST00000389048.3:c.2185C>T	p.Pro729Ser	p.P729S	ENST00000389048	NM_004304.4	729	Cca/Tca					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158630683	158630683	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146610930		P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	138	566	2	ENST00000263640.3:c.560C>T	p.Ser187Leu	p.S187L	ENST00000263640	NM_001105.4	187	tCg/tTg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212286748	212286748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	47	343	0	ENST00000342788.4:c.2948G>A	p.Arg983Lys	p.R983K	ENST00000342788	NM_005235.2	983	aGa/aAa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47058699	47058699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	59	349	0	ENST00000409792.3:c.7579C>T	p.Pro2527Ser	p.P2527S	ENST00000409792	NM_014159.6	2527	Cct/Tct					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	43	194	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189612176	189612176	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	98	392	1	ENST00000264731.3:c.1928G>A	p.Arg643Gln	p.R643Q	ENST00000264731	NM_003722.4	643	cGa/cAa					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55976627	55976627	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	106	421	0	ENST00000263923.4:c.1198C>T	p.Leu400Phe	p.L400F	ENST00000263923	NM_002253.2	400	Ctt/Ttt					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106196318	106196318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	120	375	2	ENST00000380013.4:c.4651C>T	p.His1551Tyr	p.H1551Y	ENST00000380013	NM_001127208.2	1551	Cac/Tac					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	41	158	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149499034	149499034	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	52	346	0	ENST00000261799.4:c.2794G>A	p.Glu932Lys	p.E932K	ENST00000261799	NM_002609.3	932	Gag/Aag					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176517948	176517948	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	70	391	1	ENST00000292408.4:c.446G>A	p.Trp149Ter	p.W149*	ENST00000292408	NM_213647.1	149	tGg/tAg					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176523082	176523082	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	91	395	0	ENST00000292408.4:c.1846C>G	p.Arg616Gly	p.R616G	ENST00000292408	NM_213647.1	616	Cgc/Ggc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180040050	180040050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	69	572	0	ENST00000261937.6:c.3392G>A	p.Gly1131Asp	p.G1131D	ENST00000261937	NM_182925.4	1131	gGc/gAc					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30672653	30672653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	222	492	0	ENST00000376406.3:c.4307G>C	p.Arg1436Thr	p.R1436T	ENST00000376406	NM_014641.2	1436	aGg/aCg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93956597	93956597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	82	597	0	ENST00000369303.4:c.2639G>A	p.Arg880Lys	p.R880K	ENST00000369303	NM_004440.3	880	aGg/aAg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93973599	93973599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	66	612	0	ENST00000369303.4:c.1777G>A	p.Asp593Asn	p.D593N	ENST00000369303	NM_004440.3	593	Gat/Aat					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117662582	117662582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	98	398	0	ENST00000368508.3:c.4883G>A	p.Gly1628Glu	p.G1628E	ENST00000368508	NM_002944.2	1628	gGa/gAa					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161781201	161781201	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55830907		P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	148	480	0	ENST00000366898.1:c.1204C>T	p.Arg402Cys	p.R402C	ENST00000366898	NM_004562.2	402	Cgt/Tgt					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2951913	2951913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	88	303	0	ENST00000396946.4:c.3037G>A	p.Glu1013Lys	p.E1013K	ENST00000396946	NM_032415.4	1013	Gag/Aag					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	24	453	1	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41739911	41739911	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	98	569	1	ENST00000242208.4:c.62C>T	p.Ser21Phe	p.S21F	ENST00000242208	NM_002192.2	21	tCc/tTc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508470	106508470	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	46	93	0	ENST00000359195.3:c.464C>G	p.Thr155Arg	p.T155R	ENST00000359195	NM_002649.2	155	aCg/aGg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509236	106509236	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	138	401	0	ENST00000359195.3:c.1230G>A	p.Trp410Ter	p.W410*	ENST00000359195	NM_002649.2	410	tgG/tgA					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106513378	106513378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	82	372	0	ENST00000359195.3:c.2282C>T	p.Ser761Phe	p.S761F	ENST00000359195	NM_002649.2	761	tCc/tTc					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90965810	90965810	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	48	368	0	ENST00000265433.3:c.1507A>T	p.Asn503Tyr	p.N503Y	ENST00000265433	NM_002485.4	503	Aat/Tat					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117868510	117868510	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	122	328	0	ENST00000297338.2:c.832C>T	p.Pro278Ser	p.P278S	ENST00000297338	NM_006265.2	278	Cct/Tct					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341196	8341196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	98	472	0	ENST00000356435.5:c.5020C>T	p.Arg1674Cys	p.R1674C	ENST00000356435		1674	Cgc/Tgc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341794	8341794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	75	531	1	ENST00000356435.5:c.4846G>A	p.Gly1616Arg	p.G1616R	ENST00000356435		1616	Gga/Aga					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971047	21971047	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	58	131	0	ENST00000304494.5:c.311T>G	p.Leu104Arg	p.L104R	ENST00000304494	NM_000077.4	104	cTg/cGg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971047	21971047	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	58	131	0	ENST00000304494.5:c.311T>G	p.Leu104Arg	p.L104R	ENST00000304494	NM_000077.4	104	cTg/cGg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139417634	139417634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	65	325	1	ENST00000277541.6:c.410C>T	p.Ser137Leu	p.S137L	ENST00000277541	NM_017617.3	137	tCg/tTg					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851285	63851285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	77	316	1	ENST00000279873.7:c.2063C>T	p.Ser688Phe	p.S688F	ENST00000279873	NM_032199.2	688	tCc/tTc					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94170374	94170374	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	74	412	0	ENST00000323929.3:c.1895C>T	p.Ser632Phe	p.S632F	ENST00000323929	NM_005591.3	632	tCc/tTc					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100920734	100920734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	67	654	0	ENST00000325455.5:c.2414C>T	p.Pro805Leu	p.P805L	ENST00000325455	NM_001202474.3	805	cCa/cTa					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18573894	18573894	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	39	370	0	ENST00000266497.5:c.2212C>T	p.Arg738Cys	p.R738C	ENST00000266497		738	Cgt/Tgt					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18641477	18641477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	47	430	1	ENST00000266497.5:c.2476G>A	p.Asp826Asn	p.D826N	ENST00000266497		826	Gat/Aat					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420268	49420268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	76	389	1	ENST00000301067.7:c.15481G>A	p.Glu5161Lys	p.E5161K	ENST00000301067	NM_003482.3	5161	Gag/Aag					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57858600	57858600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	102	577	1	ENST00000228682.2:c.338G>A	p.Arg113Gln	p.R113Q	ENST00000228682	NM_005269.2	113	cGa/cAa					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865804	57865804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	107	664	0	ENST00000228682.2:c.3281C>T	p.Ser1094Phe	p.S1094F	ENST00000228682	NM_005269.2	1094	tCc/tTc					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112884162	112884162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	68	326	0	ENST00000351677.2:c.97C>T	p.Pro33Ser	p.P33S	ENST00000351677	NM_002834.3	33	Cct/Tct					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112924381	112924381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	43	310	0	ENST00000351677.2:c.1327C>T	p.His443Tyr	p.H443Y	ENST00000351677	NM_002834.3	443	Cac/Tac					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28623828	28623828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	48	449	1	ENST00000241453.7:c.826C>T	p.His276Tyr	p.H276Y	ENST00000241453	NM_004119.2	276	Cat/Tat					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73355835	73355835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	33	119	0	ENST00000377767.4:c.136C>T	p.Pro46Ser	p.P46S	ENST00000377767	NM_014953.3	46	Ccg/Tcg					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103524595	103524595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	62	397	0	ENST00000355739.4:c.2726C>T	p.Pro909Leu	p.P909L	ENST00000355739	NM_000123.3	909	cCt/cTt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41988410	41988410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	97	676	0	ENST00000219905.7:c.1202C>T	p.Thr401Ile	p.T401I	ENST00000219905	NM_001164273.1	401	aCt/aTt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42058882	42058882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1379	103	676	1	ENST00000219905.7:c.8602C>T	p.Pro2868Ser	p.P2868S	ENST00000219905	NM_001164273.1	2868	Cct/Tct					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88483930	88483930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	175	467	0	ENST00000360948.2:c.1640G>A	p.Gly547Glu	p.G547E	ENST00000360948	NM_001012338.2	547	gGa/gAa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10032197	10032197	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	47	358	0	ENST00000330684.3:c.626C>T	p.Ser209Phe	p.S209F	ENST00000330684	NM_001134407.1	209	tCc/tTc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993237	72993237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1340	89	645	2	ENST00000268489.5:c.808G>A	p.Asp270Asn	p.D270N	ENST00000268489	NM_006885.3	270	Gat/Aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	131	343	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556061	29556061	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	83	265	0	ENST00000358273.4:c.2428A>T	p.Lys810Ter	p.K810*	ENST00000358273	NM_001042492.2	810	Aag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29576027	29576027	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	91	443	1	ENST00000358273.4:c.4000G>T	p.Glu1334Ter	p.E1334*	ENST00000358273	NM_001042492.2	1334	Gaa/Taa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29585377	29585377	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	100	372	0	ENST00000358273.4:c.4189T>C	p.Phe1397Leu	p.F1397L	ENST00000358273	NM_001042492.2	1397	Ttc/Ctc					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56809867	56809867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	79	479	0	ENST00000337432.4:c.988C>T	p.Pro330Ser	p.P330S	ENST00000337432	NM_058216.2	330	Ccc/Tcc					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78897378	78897378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	130	421	1	ENST00000306801.3:c.2713C>T	p.Arg905Trp	p.R905W	ENST00000306801	NM_020761.2	905	Cgg/Tgg					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56414893	56414893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	182	585	0	ENST00000348428.3:c.2294C>T	p.Pro765Leu	p.P765L	ENST00000348428	NM_006785.3	765	cCt/cTt					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2210674	2210674	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	62	426	0	ENST00000398665.3:c.1171C>T	p.Pro391Ser	p.P391S	ENST00000398665	NM_032482.2	391	Ccc/Tcc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11105576	11105576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	131	423	1	ENST00000344626.4:c.1492C>T	p.Gln498Ter	p.Q498*	ENST00000344626	NM_003072.3	498	Cag/Tag					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15289672	15289672	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	156	505	0	ENST00000263388.2:c.3799C>T	p.Pro1267Ser	p.P1267S	ENST00000263388	NM_000435.2	1267	Cct/Tct					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9523270	9523270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1190	128	545	1	ENST00000353224.5:c.1967G>A	p.Arg656Gln	p.R656Q	ENST00000353224	NM_177990.2	656	cGg/cAg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9525120	9525120	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	136	417	0	ENST00000353224.5:c.1765T>G	p.Phe589Val	p.F589V	ENST00000353224	NM_177990.2	589	Ttc/Gtc					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9560982	9560982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	78	411	0	ENST00000353224.5:c.800G>A	p.Arg267Lys	p.R267K	ENST00000353224	NM_177990.2	267	aGg/aAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40710603	40710603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	40	308	0	ENST00000373198.4:c.4248G>A	p.Met1416Ile	p.M1416I	ENST00000373198	NM_133170.3	1416	atG/atA					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790165	40790165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	28	177	0	ENST00000373198.4:c.2566G>A	p.Glu856Lys	p.E856K	ENST00000373198	NM_133170.3	856	Gag/Aag					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41420082	41420082	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	79	248	0	ENST00000373198.4:c.239C>T	p.Ser80Phe	p.S80F	ENST00000373198	NM_133170.3	80	tCt/tTt					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39755481	39755481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	62	420	0	ENST00000288319.7:c.1284G>A	p.Met428Ile	p.M428I	ENST00000288319	NM_182918.3	428	atG/atA					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44949167	44949167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	48	261	0	ENST00000377967.4:c.3728C>T	p.Pro1243Leu	p.P1243L	ENST00000377967	NM_021140.2	1243	cCa/cTa					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411779	63411779	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	84	346	0	ENST00000330258.3:c.1388C>T	p.Ser463Phe	p.S463F	ENST00000330258	NM_152424.3	463	tCc/tTc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177500	112177500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	279	282	2	ENST00000257430.4:c.6209G>T	p.Gly2070Val	p.G2070V	ENST00000257430	NM_000038.5	2070	gGc/gTc					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87570235	87570235	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009082-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	89	154	0	ENST00000277120.3:c.1975A>C	p.Asn659His	p.N659H	ENST00000277120		659	Aac/Cac					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	4093	605	0	ENST00000288135.5:c.1676T>C	p.Val559Ala	p.V559A	ENST00000288135	NM_000222.2	559	gTt/gCt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	189	354	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175772	112175772	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	50	301	0	ENST00000257430.4:c.4483del	p.Ser1495ValfsTer12	p.S1495Vfs*12	ENST00000257430	NM_000038.5	1494	gAa/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579317	7579317	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	134	325	0	ENST00000269305.4:c.370T>G	p.Cys124Gly	p.C124G	ENST00000269305	NM_001126112.2	124	Tgc/Ggc					NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40459687	40459687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1206	138	784	2	ENST00000345506.4:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000345506	NM_003152.3	618	Cgc/Tgc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593466	48593466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	68	371	0	ENST00000342988.3:c.1217C>A	p.Ala406Glu	p.A406E	ENST00000342988	NM_005359.5	406	gCg/gAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173902	112173902	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	56	290	0	ENST00000257430.4:c.2612del	p.Gly871GlufsTer45	p.G871Efs*45	ENST00000257430	NM_000038.5	871	Gga/ga					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61715368	61715368	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	11	614	3	ENST00000401558.2:c.2245C>T	p.Arg749Ter	p.R749*	ENST00000401558	NM_003400.3	749	Cga/Tga					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0007904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	261	449	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578537	7578537	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	24	396	0	ENST00000269305.4:c.393C>G	p.Asn131Lys	p.N131K	ENST00000269305	NM_001126112.2	131	aaC/aaG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577536	7577536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	72	418	0	ENST00000269305.4:c.745del	p.Arg249GlyfsTer96	p.R249Gfs*96	ENST00000269305	NM_001126112.2	249	Agg/gg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	134	335	1	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36935319	36935319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	282	677	0	ENST00000361632.4:c.1408G>A	p.Ala470Thr	p.A470T	ENST00000361632		470	Gcg/Acg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154678	112154678	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	219	377	0	ENST00000257430.4:c.949T>C	p.Ser317Pro	p.S317P	ENST00000257430	NM_000038.5	317	Tca/Cca					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	259	638	0	ENST00000347630.2:c.259T>G	p.Tyr87Asp	p.Y87D	ENST00000347630	NM_001007230.1	87	Tac/Gac					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2103355	2103410	+	frameshift_variant	Frame_Shift_Del	DEL	GCACTCTGGAAGGCGGTCGCGGATCTGTTGCAGCCGGAGCGGCCGCTGGAGGCCCG	GCACTCTGGAAGGCGGTCGCGGATCTGTTGCAGCCGGAGCGGCCGCTGGAGGCCCG	-			P-0008098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	120	388	0	ENST00000219476.3:c.242_297del	p.Leu81ArgfsTer26	p.L81Rfs*26	ENST00000219476	NM_000548.3	80	GCACTCTGGAAGGCGGTCGCGGATCTGTTGCAGCCGGAGCGGCCGCTGGAGGCCCGg/g					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	402	303	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	442	395	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	291	183	0	ENST00000267163.4:c.1215+1G>A		p.X405_splice	ENST00000267163	NM_000321.2	405						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47142954	47142954	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	187	328	0	ENST00000409792.3:c.5009G>T	p.Arg1670Ile	p.R1670I	ENST00000409792	NM_014159.6	1670	aGa/aTa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55131184	55131184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	228	387	0	ENST00000257290.5:c.727G>C	p.Val243Leu	p.V243L	ENST00000257290	NM_006206.4	243	Gtt/Ctt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3900997	3900997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	186	344	0	ENST00000262367.5:c.99G>T	p.Leu33Phe	p.L33F	ENST00000262367	NM_004380.2	33	ttG/ttT					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992240	72992240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	262	518	0	ENST00000268489.5:c.1805C>T	p.Ala602Val	p.A602V	ENST00000268489	NM_006885.3	602	gCa/gTa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44969426	44969426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	345	517	0	ENST00000377967.4:c.4108G>T	p.Glu1370Ter	p.E1370*	ENST00000377967	NM_021140.2	1370	Gaa/Taa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	268	488	1	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137519767	137519767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	58	172	0	ENST00000367739.4:c.871G>A	p.Val291Ile	p.V291I	ENST00000367739	NM_000416.2	291	Gta/Ata					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110249690	110249690	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	105	481	0	ENST00000374672.4:c.985G>T	p.Asp329Tyr	p.D329Y	ENST00000374672	NM_004235.4	329	Gac/Tac					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99491805	99491805	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	94	473	0	ENST00000268035.6:c.3590C>A	p.Ser1197Tyr	p.S1197Y	ENST00000268035	NM_000875.3	1197	tCc/tAc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164317	47164317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	164	400	0	ENST00000409792.3:c.1809del	p.Asn604IlefsTer18	p.N604Ifs*18	ENST00000409792	NM_014159.6	603	atT/at					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs876658153		P-0009564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	112	325	0	ENST00000371953.3:c.209+1G>T		p.X70_splice	ENST00000371953	NM_000314.4	70						NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	354	523	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8105965	8105965	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	276	297	0	ENST00000346208.3:c.785A>T	p.Glu262Val	p.E262V	ENST00000346208		262	gAg/gTg					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0006167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	91	355	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	135	555	1	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	117	466	0	ENST00000369535.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000369535	NM_002524.4	12	Ggt/Cgt					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14042066	14042066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	71	493	0	ENST00000311895.7:c.2613G>C	p.Lys871Asn	p.K871N	ENST00000311895	NM_005236.2	871	aaG/aaC					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47688691	47688691	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	45	530	0	ENST00000347630.2:c.609C>G	p.Cys203Trp	p.C203W	ENST00000347630	NM_001007230.1	203	tgC/tgG					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119712	70119768	+	inframe_deletion	In_Frame_Del	DEL	CACCACCCCCAAAACCGACGTGCAGCCGGGCAAGGCTGACCTGAAGCGAGAGGGGCG	CACCACCCCCAAAACCGACGTGCAGCCGGGCAAGGCTGACCTGAAGCGAGAGGGGCG	-			P-0006167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	73	557	0	ENST00000245479.2:c.715_771del	p.Thr239_Arg257del	p.T239_R257del	ENST00000245479	NM_000346.3	238	ccCACCACCCCCAAAACCGACGTGCAGCCGGGCAAGGCTGACCTGAAGCGAGAGGGGCGc/ccc					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67593380	67593380	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	117	403	0	ENST00000274335.5:c.2128del	p.Leu710SerfsTer5	p.L710Sfs*5	ENST00000274335		709	tCc/tc					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591139	67591140	+	missense_variant	Missense_Mutation	DNP	GA	GA	CC			P-0006167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	119	408	0	ENST00000274335.5:c.1732_1733delinsCC	p.Asp578Pro	p.D578P	ENST00000274335		578	GAc/CCc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	143	522	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729094	66729099	+	inframe_deletion	In_Frame_Del	DEL	TGGAGA	TGGAGA	-			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	77	440	0	ENST00000307102.5:c.303_308delGGAGAT	p.Glu102_Ile103del	p.E102_I103del	ENST00000307102	NM_002755.3	101	cTGGAGAtc/ctc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	40	102	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	40	102	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	40	102	0	ENST00000304494.5:c.220G>T	p.Asp74Tyr	p.D74Y	ENST00000304494	NM_000077.4	74	Gac/Tac					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163373	47163373	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	67	339	0	ENST00000409792.3:c.2753C>G	p.Ser918Ter	p.S918*	ENST00000409792	NM_014159.6	918	tCa/tGa					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	52	468	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344314	118344314	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	29	226	0	ENST00000534358.1:c.2440C>T	p.Gln814Ter	p.Q814*	ENST00000534358	NM_005933.3	814	Cag/Tag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27097687	27097687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	71	454	0	ENST00000324856.7:c.3276G>C	p.Leu1092Phe	p.L1092F	ENST00000324856	NM_006015.4	1092	ttG/ttC					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16259249	16259249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	33	266	0	ENST00000375759.3:c.6514G>C	p.Glu2172Gln	p.E2172Q	ENST00000375759	NM_015001.2	2172	Gag/Cag					NEWRECORD																																																																									
RIT1	0	MSKCC	GRCh37	1	155874596	155874596	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	89	517	0	ENST00000368323.3:c.164-1G>A		p.X55_splice	ENST00000368323	NM_006912.5	55						NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	175956187	175956187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	121	483	0	ENST00000367669.3:c.2025G>T	p.Leu675Phe	p.L675F	ENST00000367669	NM_022457.5	675	ttG/ttT					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243736256	243736256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	72	452	0	ENST00000263826.5:c.791C>T	p.Ser264Phe	p.S264F	ENST00000263826	NM_005465.4	264	tCc/tTc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29455312	29455312	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	38	257	0	ENST00000389048.3:c.2490G>A	p.Met830Ile	p.M830I	ENST00000389048	NM_004304.4	830	atG/atA					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29541192	29541192	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	64	506	1	ENST00000389048.3:c.1625C>A	p.Pro542Gln	p.P542Q	ENST00000389048	NM_004304.4	542	cCg/cAg					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47643501	47643501	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	79	565	0	ENST00000233146.2:c.1009C>G	p.Gln337Glu	p.Q337E	ENST00000233146	NM_000251.2	337	Caa/Gaa					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190738248	190738248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	45	253	0	ENST00000441310.2:c.2500G>C	p.Glu834Gln	p.E834Q	ENST00000441310	NM_000534.4	834	Gaa/Caa					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149928	202149928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	48	427	0	ENST00000358485.4:c.1369G>A	p.Asp457Asn	p.D457N	ENST00000358485	NM_001080125.1	457	Gac/Aac					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49932898	49932898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	75	589	0	ENST00000296474.3:c.3046G>C	p.Asp1016His	p.D1016H	ENST00000296474	NM_002447.2	1016	Gac/Cac					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49940549	49940549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	54	565	1	ENST00000296474.3:c.494C>T	p.Ser165Leu	p.S165L	ENST00000296474	NM_002447.2	165	tCa/tTa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89391177	89391177	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	69	282	0	ENST00000336596.2:c.1243G>T	p.Val415Leu	p.V415L	ENST00000336596	NM_005233.5	415	Gtg/Ttg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134880945	134880945	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	87	451	0	ENST00000398015.3:c.1508T>C	p.Val503Ala	p.V503A	ENST00000398015	NM_004441.4	503	gTg/gCg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134911617	134911617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	61	373	0	ENST00000398015.3:c.2082G>A	p.Met694Ile	p.M694I	ENST00000398015	NM_004441.4	694	atG/atA					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178951994	178951994	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	97	433	0	ENST00000263967.3:c.3049G>C	p.Asp1017His	p.D1017H	ENST00000263967	NM_006218.2	1017	Gat/Cat					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186503747	186503747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	153	624	0	ENST00000323963.5:c.424C>G	p.Arg142Gly	p.R142G	ENST00000323963		142	Cga/Gga					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149497194	149497194	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	139	360	1	ENST00000261799.4:c.3124C>A	p.Pro1042Thr	p.P1042T	ENST00000261799	NM_002609.3	1042	Ccc/Acc					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26032171	26032171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	184	671	0	ENST00000244661.2:c.118C>T	p.His40Tyr	p.H40Y	ENST00000244661	NM_003537.3	40	Cac/Tac					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162206891	162206891	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	50	379	0	ENST00000366898.1:c.784G>C	p.Asp262His	p.D262H	ENST00000366898	NM_004562.2	262	Gac/Cac					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	14017058	14017058	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	57	354	0	ENST00000405192.2:c.229G>A	p.Glu77Lys	p.E77K	ENST00000405192	NM_001163147.1	77	Gaa/Aaa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50450274	50450274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	48	451	0	ENST00000331340.3:c.458C>T	p.Ser153Leu	p.S153L	ENST00000331340	NM_006060.4	153	tCa/tTa					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81381564	81381564	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	96	372	0	ENST00000222390.5:c.497G>T	p.Ser166Ile	p.S166I	ENST00000222390	NM_000601.4	166	aGc/aTc					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43619249	43619249	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	44	380	0	ENST00000355710.3:c.2932G>C	p.Glu978Gln	p.E978Q	ENST00000355710	NM_020975.4	978	Gag/Cag					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2161487	2161487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	45	532	0	ENST00000434045.2:c.40G>A	p.Glu14Lys	p.E14K	ENST00000434045	NM_001127598.1	14	Gag/Aag					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102195876	102195876	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	104	627	0	ENST00000263464.3:c.636G>C	p.Leu212Phe	p.L212F	ENST00000263464	NM_001165.4	212	ttG/ttC					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344204	118344204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	37	334	0	ENST00000534358.1:c.2330C>T	p.Ser777Phe	p.S777F	ENST00000534358	NM_005933.3	777	tCt/tTt					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18644406	18644406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	111	472	2	ENST00000266497.5:c.2584G>T	p.Gly862Cys	p.G862C	ENST00000266497		862	Ggc/Tgc					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56495711	56495711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	57	325	0	ENST00000267101.3:c.3901C>G	p.Gln1301Glu	p.Q1301E	ENST00000267101	NM_001982.3	1301	Cag/Gag					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111884834	111884834	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs181079548		P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	82	569	1	ENST00000341259.2:c.923G>A	p.Arg308Gln	p.R308Q	ENST00000341259	NM_005475.2	308	cGa/cAa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32932056	32932056	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	46	391	0	ENST00000380152.3:c.7795G>C	p.Glu2599Gln	p.E2599Q	ENST00000380152		2599	Gaa/Caa					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103527662	103527662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	87	345	0	ENST00000355739.4:c.2970G>T	p.Gln990His	p.Q990H	ENST00000355739	NM_000123.3	990	caG/caT					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007752	45007752	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	87	411	1	ENST00000558401.1:c.199G>T	p.Glu67Ter	p.E67*	ENST00000558401	NM_004048.2	67	Gaa/Taa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2129378	2129378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	37	484	1	ENST00000219476.3:c.3233G>A	p.Arg1078Gln	p.R1078Q	ENST00000219476	NM_000548.3	1078	cGg/cAg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9923342	9923342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	69	566	0	ENST00000330684.3:c.1945C>G	p.Leu649Val	p.L649V	ENST00000330684	NM_001134407.1	649	Ctg/Gtg					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14029521	14029521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	42	281	1	ENST00000311895.7:c.1732G>T	p.Val578Leu	p.V578L	ENST00000311895	NM_005236.2	578	Gtg/Ttg					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56875633	56875633	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	78	494	0	ENST00000308159.5:c.2237C>G	p.Ser746Ter	p.S746*	ENST00000308159	NM_014669.4	746	tCa/tGa					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89346246	89346246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	88	384	0	ENST00000301030.4:c.6704C>A	p.Pro2235Gln	p.P2235Q	ENST00000301030	NM_001256183.1	2235	cCg/cAg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89347050	89347050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	80	573	0	ENST00000301030.4:c.5900C>T	p.Ser1967Phe	p.S1967F	ENST00000301030	NM_001256183.1	1967	tCt/tTt					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12011209	12011209	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	43	311	0	ENST00000353533.5:c.616G>T	p.Gly206Cys	p.G206C	ENST00000353533	NM_003010.3	206	Ggc/Tgc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15965093	15965093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	42	261	0	ENST00000268712.3:c.5503G>C	p.Asp1835His	p.D1835H	ENST00000268712	NM_006311.3	1835	Gat/Cat					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40353809	40353809	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	100	577	1	ENST00000293328.3:c.2311G>T	p.Glu771Ter	p.E771*	ENST00000293328	NM_012448.3	771	Gag/Tag					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41245326	41245326	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	64	490	0	ENST00000357654.3:c.2222C>T	p.Ser741Phe	p.S741F	ENST00000357654	NM_007294.3	741	tCt/tTt					NEWRECORD																																																																									
SRSF2	0	MSKCC	GRCh37	17	74733240	74733240	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	66	402	0	ENST00000359995.5:c.3G>A	p.Met1?	p.M1?	ENST00000359995	NM_001195427.1	1	atG/atA					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584530	48584530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	112	409	1	ENST00000342988.3:c.703G>A	p.Glu235Lys	p.E235K	ENST00000342988	NM_005359.5	235	Gaa/Aaa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597387	10597387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150193881		P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	39	451	0	ENST00000171111.5:c.1816G>A	p.Val606Met	p.V606M	ENST00000171111	NM_203500.1	606	Gtg/Atg					NEWRECORD																																																																									
CALR	0	MSKCC	GRCh37	19	13054544	13054544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	89	743	0	ENST00000316448.5:c.1071G>A	p.Met357Ile	p.M357I	ENST00000316448	NM_004343.3	357	atG/atA					NEWRECORD																																																																									
CALR	0	MSKCC	GRCh37	19	13054665	13054665	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150264068		P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	98	829	0	ENST00000316448.5:c.1192G>A	p.Glu398Lys	p.E398K	ENST00000316448	NM_004343.3	398	Gag/Aag					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15292577	15292577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	65	418	2	ENST00000263388.2:c.2602G>T	p.Val868Leu	p.V868L	ENST00000263388	NM_000435.2	868	Gtg/Ttg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9624805	9624805	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	41	326	0	ENST00000353224.5:c.172T>A	p.Cys58Ser	p.C58S	ENST00000353224	NM_177990.2	58	Tgc/Agc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40899042	40899042	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	92	572	1	ENST00000373198.4:c.2228C>A	p.Thr743Asn	p.T743N	ENST00000373198	NM_133170.3	743	aCc/aAc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41554419	41554419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	129	437	0	ENST00000263253.7:c.3505G>C	p.Glu1169Gln	p.E1169Q	ENST00000263253	NM_001429.3	1169	Gag/Cag					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41554476	41554476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	128	441	0	ENST00000263253.7:c.3562G>C	p.Asp1188His	p.D1188H	ENST00000263253	NM_001429.3	1188	Gat/Cat					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41554499	41554499	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	104	362	0	ENST00000263253.7:c.3585G>C	p.Gln1195His	p.Q1195H	ENST00000263253	NM_001429.3	1195	caG/caC					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39923087	39923087	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	171	362	0	ENST00000378444.4:c.3621delA	p.Lys1207AsnfsTer31	p.K1207Nfs*31	ENST00000378444	NM_001123385.1	1207	aaA/aa					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48027599	48027599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	29	244	0	ENST00000234420.5:c.2477A>G	p.His826Arg	p.H826R	ENST00000234420	NM_000179.2	826	cAt/cGt					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87322770	87322770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	45	357	0	ENST00000277120.3:c.371G>A	p.Arg124Gln	p.R124Q	ENST00000277120		124	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577150	7577150	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	146	498	0	ENST00000269305.4:c.788delA	p.Asn263IlefsTer82	p.N263Ifs*82	ENST00000269305	NM_001126112.2	263	aAt/at					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398280	25398281	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0006790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	152	430	1	ENST00000256078.4:c.38_39delinsTT	p.Gly13Val	p.G13V	ENST00000256078	NM_033360.2	13	gGC/gTT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	54	473	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	80	557	0	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916143	9916143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	78	560	0	ENST00000330684.3:c.2146G>A	p.Ala716Thr	p.A716T	ENST00000330684	NM_001134407.1	716	Gcc/Acc					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	11	485	1	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	208	488	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	185	448	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg					NEWRECORD																																																																									
SHQ1	0	MSKCC	GRCh37	3	72866458	72866458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	40	514	1	ENST00000325599.8:c.805C>T	p.Arg269Cys	p.R269C	ENST00000325599	NM_018130.2	269	Cgt/Tgt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467403	66467403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	151	312	0	ENST00000273854.3:c.866G>T	p.Cys289Phe	p.C289F	ENST00000273854	NM_004439.5	289	tGc/tTc					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57753381	57753381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	75	438	0	ENST00000274289.3:c.743C>T	p.Ser248Phe	p.S248F	ENST00000274289	NM_006622.3	248	tCt/tTt					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32417827	32417827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	75	425	1	ENST00000332351.3:c.1225C>A	p.Gln409Lys	p.Q409K	ENST00000332351	NM_024426.4	409	Cag/Aag					NEWRECORD																																																																									
FGF4	0	MSKCC	GRCh37	11	69588157	69588157	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	266	753	0	ENST00000168712.1:c.541C>G	p.Leu181Val	p.L181V	ENST00000168712	NM_002007.2	181	Ctg/Gtg					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111885148	111885148	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	277	696	0	ENST00000341259.2:c.1036G>A	p.Gly346Arg	p.G346R	ENST00000341259	NM_005475.2	346	Ggg/Agg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2104319	2104319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	148	546	0	ENST00000219476.3:c.359G>T	p.Arg120Ile	p.R120I	ENST00000219476	NM_000548.3	120	aGa/aTa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600324	10600324	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	120	483	2	ENST00000171111.5:c.1531G>T	p.Gly511Cys	p.G511C	ENST00000171111	NM_203500.1	511	Ggc/Tgc					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30035154	30035154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	226	615	0	ENST00000338641.4:c.316G>A	p.Glu106Lys	p.E106K	ENST00000338641	NM_000268.3	106	Gaa/Aaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	162	387	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	148	472	1	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974681	21974681	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	169	446	0	ENST00000304494.5:c.146T>A	p.Ile49Asn	p.I49N	ENST00000304494	NM_000077.4	49	aTc/aAc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974681	21974681	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	169	446	0	ENST00000304494.5:c.146T>A	p.Ile49Asn	p.I49N	ENST00000304494	NM_000077.4	49	aTc/aAc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	420	346	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	199	243	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
VTCN1	0	MSKCC	GRCh37	1	117699242	117699242	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	351	378	0	ENST00000369458.3:c.399C>G	p.Ile133Met	p.I133M	ENST00000369458	NM_024626.3	133	atC/atG					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47147570	47147570	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	250	277	1	ENST00000409792.3:c.4756C>G	p.His1586Asp	p.H1586D	ENST00000409792	NM_014159.6	1586	Cat/Gat					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44949096	44949096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006852-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	467	256	0	ENST00000377967.4:c.3657G>C	p.Trp1219Cys	p.W1219C	ENST00000377967	NM_021140.2	1219	tgG/tgC					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	27	407	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	74	637	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	15	451	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	240	507	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	191	648	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435689	110435689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	48	260	1	ENST00000375856.3:c.2712G>A	p.Met904Ile	p.M904I	ENST00000375856	NM_003749.2	904	atG/atA					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134898765	134898765	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	232	714	0	ENST00000398015.3:c.1823G>T	p.Arg608Leu	p.R608L	ENST00000398015	NM_004441.4	608	cGg/cTg					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149441379	149441379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	236	516	1	ENST00000286301.3:c.1660G>A	p.Glu554Lys	p.E554K	ENST00000286301	NM_005211.3	554	Gag/Aag					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106520054	106520054	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	202	513	0	ENST00000359195.3:c.2482A>T	p.Ile828Phe	p.I828F	ENST00000359195	NM_002649.2	828	Att/Ttt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174113	112174114	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	146	583	0	ENST00000257430.4:c.2824_2825del	p.Asn942PhefsTer3	p.N942Ffs*3	ENST00000257430	NM_000038.5	941	gAA/g					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410716	63410716	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	410	432	0	ENST00000330258.3:c.2451del	p.Asp817GlufsTer50	p.D817Efs*50	ENST00000330258	NM_152424.3	817	gaT/ga					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93973599	93973599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1291	374	667	0	ENST00000369303.4:c.1777G>A	p.Asp593Asn	p.D593N	ENST00000369303	NM_004440.3	593	Gat/Aat					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139400212	139400212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	61	344	0	ENST00000277541.6:c.4136C>T	p.Thr1379Met	p.T1379M	ENST00000277541	NM_017617.3	1379	aCg/aTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	177	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0009530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	208	386	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17943345	17943345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	103	471	0	ENST00000458235.1:c.2663G>A	p.Gly888Asp	p.G888D	ENST00000458235	NM_000215.3	888	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	310	380	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692901	89692901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	177	284	0	ENST00000371953.3:c.385G>A	p.Gly129Arg	p.G129R	ENST00000371953	NM_000314.4	129	Gga/Aga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176623	112176623	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	69	413	0	ENST00000257430.4:c.5333delC	p.Pro1778LeufsTer12	p.P1778Lfs*12	ENST00000257430	NM_000038.5	1778	Cct/ct					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692982	89692982	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	180	310	0	ENST00000371953.3:c.469delG	p.Glu157LysfsTer2	p.E157Kfs*2	ENST00000371953	NM_000314.4	156	Ggg/gg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	359	265	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0007157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	9	385	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	219	414	0	ENST00000349496.5:c.95A>G	p.Asp32Gly	p.D32G	ENST00000349496	NM_001904.3	32	gAc/gGc					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098965	178098965	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	68	198	0	ENST00000397062.3:c.80A>C	p.Asp27Ala	p.D27A	ENST00000397062	NM_006164.4	27	gAt/gCt					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106155446	106155446	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	203	469	0	ENST00000380013.4:c.347A>C	p.Gln116Pro	p.Q116P	ENST00000380013	NM_001127208.2	116	cAa/cCa					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104268933	104268933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	174	461	0	ENST00000369902.3:c.190G>A	p.Gly64Ser	p.G64S	ENST00000369902	NM_016169.3	64	Ggc/Agc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27107083	27107083	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	187	190	0	ENST00000324856.7:c.6694del	p.Arg2232GlyfsTer35	p.R2232Gfs*35	ENST00000324856	NM_006015.4	2232	Cgg/gg					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	102	310	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	186	307	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	270	292	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16254872	16254872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	136	280	0	ENST00000375759.3:c.2137C>T	p.Arg713Trp	p.R713W	ENST00000375759	NM_015001.2	713	Cgg/Tgg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142261574	142261574	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	123	285	0	ENST00000350721.4:c.3383T>C	p.Leu1128Ser	p.L1128S	ENST00000350721	NM_001184.3	1128	tTg/tCg					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55962438	55962438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	144	303	1	ENST00000263923.4:c.2686C>T	p.Leu896Phe	p.L896F	ENST00000263923	NM_002253.2	896	Ctc/Ttc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49418448	49418448	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	99	178	0	ENST00000301067.7:c.15965G>T	p.Gly5322Val	p.G5322V	ENST00000301067	NM_003482.3	5322	gGg/gTg					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81972517	81972517	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	139	424	0	ENST00000359376.3:c.3310G>T	p.Val1104Leu	p.V1104L	ENST00000359376	NM_002661.3	1104	Gtg/Ttg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41568631	41568631	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	146	278	0	ENST00000263253.7:c.4584del	p.Lys1528AsnfsTer13	p.K1528Nfs*13	ENST00000263253	NM_001429.3	1527	agA/ag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117647458	117647462	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAA	CTGAA	-			P-0007643-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	145	448	0	ENST00000368508.3:c.5482_5486del	p.Phe1828SerfsTer6	p.F1828Sfs*6	ENST00000368508	NM_002944.2	1828	TTCAGa/a					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	120	229	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11217299	11217299	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	155	440	1	ENST00000361445.4:c.4379T>C	p.Leu1460Pro	p.L1460P	ENST00000361445	NM_004958.3	1460	cTt/cCt					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134414	41134414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1897	148	634	0	ENST00000379561.5:c.1214A>G	p.Tyr405Cys	p.Y405C	ENST00000379561	NM_002015.3	405	tAc/tGc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17945725	17945725	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	158	337	0	ENST00000458235.1:c.2135G>T	p.Gly712Val	p.G712V	ENST00000458235	NM_000215.3	712	gGc/gTc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52696294	52696294	+	splice_acceptor_variant	Splice_Site	DEL	T	T	-			P-0005952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	128	287	0	ENST00000394830.3:c.385-2del		p.X129_splice	ENST00000394830	NM_018313.4	129						NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188294	10188309	+	frameshift_variant	Frame_Shift_Del	DEL	CTATTTTTGCCAATAT	CTATTTTTGCCAATAT	-			P-0005952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	223	404	0	ENST00000256474.2:c.438_453del	p.Ile147HisfsTer7	p.I147Hfs*7	ENST00000256474	NM_000551.3	146	cCTATTTTTGCCAATATc/cc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	216	369	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178096642	178096642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	192	349	0	ENST00000397062.3:c.689C>T	p.Ser230Leu	p.S230L	ENST00000397062	NM_006164.4	230	tCa/tTa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112151271	112151271	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	207	403	0	ENST00000257430.4:c.914C>G	p.Thr305Arg	p.T305R	ENST00000257430	NM_000038.5	305	aCa/aGa					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162864446	162864446	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	190	419	0	ENST00000366898.1:c.67A>G	p.Ile23Val	p.I23V	ENST00000366898	NM_004562.2	23	Atc/Gtc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118363812	118363812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	250	393	0	ENST00000534358.1:c.5045G>C	p.Ser1682Thr	p.S1682T	ENST00000534358	NM_005933.3	1682	aGt/aCt					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41244784	41244784	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	312	533	0	ENST00000357654.3:c.2764A>G	p.Thr922Ala	p.T922A	ENST00000357654	NM_007294.3	922	Aca/Gca					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59761133	59761133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	259	473	1	ENST00000259008.2:c.3274C>T	p.Pro1092Ser	p.P1092S	ENST00000259008	NM_032043.2	1092	Ccg/Tcg					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18266706	18266706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	141	243	0	ENST00000222254.8:c.17G>C	p.Gly6Ala	p.G6A	ENST00000222254	NM_005027.3	6	gGc/gCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	93	371	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546626	9546626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	248	554	0	ENST00000353224.5:c.1396G>A	p.Ala466Thr	p.A466T	ENST00000353224	NM_177990.2	466	Gcc/Acc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	179	300	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45800084	45800084	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	197	551	0	ENST00000372115.3:c.136G>T	p.Ala46Ser	p.A46S	ENST00000372115	NM_001048171.1	46	Gcc/Tcc					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37035147	37035147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	31	140	0	ENST00000231790.2:c.109G>C	p.Glu37Gln	p.E37Q	ENST00000231790	NM_000249.3	37	Gag/Cag					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89448601	89448601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	122	472	0	ENST00000336596.2:c.1565G>T	p.Arg522Leu	p.R522L	ENST00000336596	NM_005233.5	522	cGc/cTc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134898825	134898825	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	147	335	0	ENST00000398015.3:c.1882+1G>T		p.X628_splice	ENST00000398015	NM_004441.4	628						NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157414	106157414	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	105	327	0	ENST00000380013.4:c.2315A>T	p.Glu772Val	p.E772V	ENST00000380013	NM_001127208.2	772	gAa/gTa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173451	112173451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	43	464	0	ENST00000257430.4:c.2160G>T	p.Met720Ile	p.M720I	ENST00000257430	NM_000038.5	720	atG/atT					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176694659	176694659	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	116	534	0	ENST00000439151.2:c.5243G>T	p.Cys1748Phe	p.C1748F	ENST00000439151	NM_022455.4	1748	tGt/tTt					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	401525	401525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	47	348	1	ENST00000380956.4:c.847G>A	p.Asp283Asn	p.D283N	ENST00000380956	NM_001195286.1	283	Gac/Aac					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6048631	6048631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	66	451	0	ENST00000265849.7:c.20C>T	p.Ser7Leu	p.S7L	ENST00000265849	NM_000535.5	7	tCg/tTg					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467717	50467717	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	122	482	0	ENST00000331340.3:c.952G>C	p.Ala318Pro	p.A318P	ENST00000331340	NM_006060.4	318	Gcc/Ccc					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81335653	81335653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	104	442	0	ENST00000222390.5:c.1707G>C	p.Gln569His	p.Q569H	ENST00000222390	NM_000601.4	569	caG/caC					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140507759	140507759	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	98	295	1	ENST00000288602.6:c.711+1G>A		p.X237_splice	ENST00000288602	NM_004333.4	237						NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148515124	148515124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1029	208	533	0	ENST00000320356.2:c.1085G>T	p.Arg362Leu	p.R362L	ENST00000320356	NM_004456.4	362	cGg/cTg					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38271672	38271672	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	76	458	0	ENST00000425967.3:c.2277G>C	p.Glu759Asp	p.E759D	ENST00000425967	NM_001174067.1	759	gaG/gaC					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5123003	5123003	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	201	334	1	ENST00000381652.3:c.3060-1G>T		p.X1020_splice	ENST00000381652	NM_004972.3	1020						NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243857	46243857	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	271	316	0	ENST00000334344.6:c.1951C>T	p.Gln651Ter	p.Q651*	ENST00000334344	NM_152641.2	651	Cag/Tag					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95582004	95582004	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	71	249	0	ENST00000343455.3:c.1907G>C	p.Arg636Thr	p.R636T	ENST00000343455	NM_177438.2	636	aGa/aCa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11135010	11135010	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	234	386	1	ENST00000344626.4:c.2977G>T	p.Glu993Ter	p.E993*	ENST00000344626	NM_003072.3	993	Gag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	32	214	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341947	8341947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	35	142	0	ENST00000356435.5:c.4693G>A	p.Val1565Ile	p.V1565I	ENST00000356435		1565	Gtc/Atc					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120527	70120527	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	40	110	0	ENST00000245479.2:c.1529G>C	p.Ter510SerextTer49	p.*510Sext*49	ENST00000245479	NM_000346.3	510	tGa/tCa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68846080	68846080	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	40	243	0	ENST00000261769.5:c.1051C>T	p.Gln351Ter	p.Q351*	ENST00000261769	NM_004360.3	351	Caa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577077	7577077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	32	206	0	ENST00000269305.4:c.861G>C	p.Glu287Asp	p.E287D	ENST00000269305	NM_001126112.2	287	gaG/gaC					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50921160	50921160	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	26	260	0	ENST00000440232.2:c.3280C>T	p.Gln1094Ter	p.Q1094*	ENST00000440232	NM_002691.3	1094	Cag/Tag					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115118932	115118934	+	frameshift_variant	Frame_Shift_Del	DEL	TAA	TAA	AT			P-0005267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	49	148	0	ENST00000257566.3:c.407_409delinsAT	p.Phe136TyrfsTer3	p.F136Yfs*3	ENST00000257566	NM_016569.3	136	tTTAaa/tATaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006292-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	38	239	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27056214	27056214	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	96	263	1	ENST00000324856.7:c.1210C>T	p.Gln404Ter	p.Q404*	ENST00000324856	NM_006015.4	404	Caa/Taa					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46509407	46509407	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	126	354	0	ENST00000262741.5:c.1324G>T	p.Asp442Tyr	p.D442Y	ENST00000262741	NM_003629.3	442	Gac/Tac					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29445247	29445247	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	124	391	0	ENST00000389048.3:c.3478G>C	p.Asp1160His	p.D1160H	ENST00000389048	NM_004304.4	1160	Gac/Cac					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39567804	39567804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	114	313	0	ENST00000262039.4:c.560T>C	p.Met187Thr	p.M187T	ENST00000262039	NM_002647.2	187	aTg/aCg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44929498	44929498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	95	243	0	ENST00000377967.4:c.2598G>A	p.Met866Ile	p.M866I	ENST00000377967	NM_021140.2	866	atG/atA					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55948714	55948714	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	107	398	0	ENST00000263923.4:c.3751del	p.Val1251Ter	p.V1251*	ENST00000263923	NM_002253.2	1251	Gta/ta					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578398	7578398	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs68130327		P-0009343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	72	244	0	ENST00000269305.4:c.532delC	p.His178ThrfsTer69	p.H178Tfs*69	ENST00000269305	NM_001126112.2	178	Cac/ac					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	38	570	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	46	398	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	54	345	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	12	221	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0006817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	21	228	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553539	106553539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006817-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	20	144	2	ENST00000369096.4:c.1504G>A	p.Ala502Thr	p.A502T	ENST00000369096	NM_001198.3	502	Gcc/Acc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	154	346	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133212487	133212487	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	98	346	0	ENST00000320574.5:c.5802C>G	p.His1934Gln	p.H1934Q	ENST00000320574	NM_006231.2	1934	caC/caG					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339942	70339942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	103	521	0	ENST00000374080.3:c.475C>A	p.Leu159Ile	p.L159I	ENST00000374080		159	Ctc/Atc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86685250	86685250	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	106	259	0	ENST00000274376.6:c.2966C>T	p.Thr989Met	p.T989M	ENST00000274376	NM_002890.2	989	aCg/aTg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68857322	68857322	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	146	209	0	ENST00000261769.5:c.1957A>T	p.Lys653Ter	p.K653*	ENST00000261769	NM_004360.3	653	Aag/Tag					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12043155	12043155	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0005429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	129	282	2	ENST00000353533.5:c.1041-1G>T		p.X347_splice	ENST00000353533	NM_003010.3	347						NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16029431	16029435	+	frameshift_variant	Frame_Shift_Del	DEL	TTTCT	TTTCT	-			P-0005429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	128	269	0	ENST00000268712.3:c.1595_1599delAGAAA	p.Lys532ArgfsTer2	p.K532Rfs*2	ENST00000268712	NM_006311.3	532	aAGAAA/a					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	106	318	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063312	67063312	+	start_lost	Translation_Start_Site	SNP	T	T	A			P-0006497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	314	282	0	ENST00000412916.2:c.2T>A	p.Met1?	p.M1?	ENST00000412916		1	aTg/aAg					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56161191	56161209	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGTATTCATCTGCTAT	TTCTGTATTCATCTGCTAT	-			P-0006497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	284	515	0	ENST00000399503.3:c.1062_1080del	p.Phe354LeufsTer2	p.F354Lfs*2	ENST00000399503	NM_005921.1	354	TTCTGTATTCATCTGCTATtt/tt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16052760	16052770	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCACCCTTTG	CTCACCCTTTG	-			P-0006497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	261	538	0	ENST00000268712.3:c.904_909+5del		p.X302_splice	ENST00000268712	NM_006311.3	302						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574014	7574025	+	inframe_deletion	In_Frame_Del	DEL	AAGCGCTCACGC	AAGCGCTCACGC	-			P-0006497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	412	776	0	ENST00000269305.4:c.1002_1013del	p.Arg335_Phe338del	p.R335_F338del	ENST00000269305	NM_001126112.2	334	ggGCGTGAGCGCTTc/ggc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	804	608	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108198396	108198396	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	174	460	0	ENST00000278616.4:c.7000T>G	p.Tyr2334Asp	p.Y2334D	ENST00000278616	NM_000051.3	2334	Tac/Gac					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1219344	1219344	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	462	619	0	ENST00000326873.7:c.396del	p.Cys132TrpfsTer29	p.C132Wfs*29	ENST00000326873	NM_000455.4	132	tgC/tg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88476318	88476318	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	317	494	0	ENST00000360948.2:c.1814G>T	p.Gly605Val	p.G605V	ENST00000360948	NM_001012338.2	605	gGa/gTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	336	415	0	ENST00000269305.4:c.497C>G	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tGa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27092812	27092812	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	341	511	0	ENST00000324856.7:c.2833G>T	p.Gly945Ter	p.G945*	ENST00000324856	NM_006015.4	945	Gga/Tga					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78430334	78430334	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	142	367	0	ENST00000370768.2:c.834A>G	p.Ile278Met	p.I278M	ENST00000370768	NM_003902.3	278	atA/atG					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176012883	176012883	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	229	555	0	ENST00000367669.3:c.1493G>T	p.Trp498Leu	p.W498L	ENST00000367669	NM_022457.5	498	tGg/tTg					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227662389	227662389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	229	403	0	ENST00000305123.5:c.1066G>C	p.Ala356Pro	p.A356P	ENST00000305123	NM_005544.2	356	Gcc/Ccc					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119721078	119721078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	252	363	0	ENST00000316626.5:c.97G>A	p.Asp33Asn	p.D33N	ENST00000316626		33	Gac/Aac					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187549835	187549835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	318	396	1	ENST00000441802.2:c.4406C>T	p.Thr1469Ile	p.T1469I	ENST00000441802	NM_005245.3	1469	aCa/aTa					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729984	41729984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1190	433	768	2	ENST00000242208.4:c.545C>A	p.Pro182Gln	p.P182Q	ENST00000242208	NM_002192.2	182	cCg/cAg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246213	46246213	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	347	525	0	ENST00000334344.6:c.4307A>C	p.Asn1436Thr	p.N1436T	ENST00000334344	NM_152641.2	1436	aAt/aCt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49438726	49438726	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	324	515	0	ENST00000301067.7:c.4764A>T	p.Glu1588Asp	p.E1588D	ENST00000301067	NM_003482.3	1588	gaA/gaT					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57857547	57857547	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	362	537	1	ENST00000228682.2:c.73C>T	p.Gln25Ter	p.Q25*	ENST00000228682	NM_005269.2	25	Cag/Tag					NEWRECORD																																																																									
RAD51	0	MSKCC	GRCh37	15	41011093	41011093	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	387	562	0	ENST00000267868.3:c.526G>A	p.Glu176Lys	p.E176K	ENST00000267868	NM_002875.4	176	Gag/Aag					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33792773	33792773	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	60	92	0	ENST00000498907.2:c.548C>A	p.Pro183Gln	p.P183Q	ENST00000498907	NM_004364.3	183	cCg/cAg					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138374361	138374362	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	93	283	0	ENST00000289153.2:c.3082_3083del	p.Leu1028CysfsTer6	p.L1028Cfs*6	ENST00000289153	NM_006219.2	1028	CTt/t					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11181302	11181302	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0006976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	137	446	0	ENST00000361445.4:c.6933+1del		p.X2311_splice	ENST00000361445	NM_004958.3	2311						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579592	7579592	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0008241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	376	321	0	ENST00000269305.4:c.97-2A>T		p.X33_splice	ENST00000269305	NM_001126112.2	33						NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41219712	41219712	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0008241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	177	356	0	ENST00000357654.3:c.4987A>G	p.Met1663Val	p.M1663V	ENST00000357654	NM_007294.3	1663	Atg/Gtg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0005528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	404	500	2	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21565435	21565435	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1581	123	551	2	ENST00000382592.4:c.451C>T	p.Arg151Trp	p.R151W	ENST00000382592	NM_014572.2	151	Cgg/Tgg					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150004625	150004625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	203	611	1	ENST00000253339.5:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000253339		534	Gag/Aag					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039419	49039419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	58	571	0	ENST00000267163.4:c.2404G>C	p.Gly802Arg	p.G802R	ENST00000267163	NM_000321.2	802	Ggg/Cgg					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41245882	41245882	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	123	544	0	ENST00000357654.3:c.1666A>C	p.Lys556Gln	p.K556Q	ENST00000357654	NM_007294.3	556	Aaa/Caa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175350	112175351	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0005528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	180	331	0	ENST00000257430.4:c.4059_4060del	p.Glu1353AspfsTer21	p.E1353Dfs*21	ENST00000257430	NM_000038.5	1353	gaATtt/gatt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	400	478	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242483	55242506	+	inframe_deletion	In_Frame_Del	DEL	ATCTCCGAAAGCCAACAAGGAAAT	ATCTCCGAAAGCCAACAAGGAAAT	-			P-0006995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	1479	386	1	ENST00000275493.2:c.2253_2276del	p.Ser752_Ile759del	p.S752_I759del	ENST00000275493	NM_005228.3	751	acATCTCCGAAAGCCAACAAGGAAATc/acc					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900250	101900250	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	31	409	0	ENST00000374994.4:c.684A>T	p.Glu228Asp	p.E228D	ENST00000374994	NM_004612.2	228	gaA/gaT					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0006995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	261	472	0	ENST00000329236.7:c.1459+1G>T		p.X487_splice	ENST00000329236	NM_001204466.1	487						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	300	552	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	154	277	1	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	170	381	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173947	112173947	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	96	350	0	ENST00000257430.4:c.2656C>T	p.Gln886Ter	p.Q886*	ENST00000257430	NM_000038.5	886	Cag/Tag					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245411	153245411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	245	376	0	ENST00000281708.4:c.1780C>T	p.Leu594Phe	p.L594F	ENST00000281708	NM_033632.3	594	Ctt/Ttt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176245	112176245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	157	487	0	ENST00000257430.4:c.4954T>C	p.Ser1652Pro	p.S1652P	ENST00000257430	NM_000038.5	1652	Tcc/Ccc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176562462	176562462	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	146	408	0	ENST00000439151.2:c.358G>C	p.Gly120Arg	p.G120R	ENST00000439151	NM_022455.4	120	Ggt/Cgt					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2968293	2968293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	204	473	1	ENST00000396946.4:c.1693G>A	p.Ala565Thr	p.A565T	ENST00000396946	NM_032415.4	565	Gcc/Acc					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119103261	119103261	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005634-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	239	546	0	ENST00000264033.4:c.299C>G	p.Ser100Ter	p.S100*	ENST00000264033	NM_005188.3	100	tCa/tGa					NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0004974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	107	618	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68849663	68849663	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	155	372	0	ENST00000261769.5:c.1565+1G>A		p.X522_splice	ENST00000261769	NM_004360.3	522						NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434352	49434352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	191	480	0	ENST00000301067.7:c.7201C>T	p.Arg2401Cys	p.R2401C	ENST00000301067	NM_003482.3	2401	Cgc/Tgc					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71021828	71021828	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	109	263	0	ENST00000318789.4:c.1531-1G>A		p.X511_splice	ENST00000318789	NM_032682.5	511						NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115118895	115118895	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	111	313	0	ENST00000257566.3:c.446A>G	p.Tyr149Cys	p.Y149C	ENST00000257566	NM_016569.3	149	tAc/tGc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006938-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	82	531	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0009608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	96	482	2	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0009608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	43	522	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508614	106508614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	27	310	0	ENST00000359195.3:c.608C>T	p.Thr203Met	p.T203M	ENST00000359195	NM_002649.2	203	aCg/aTg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2135023	2135023	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs144062721		P-0009608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	58	607	0	ENST00000219476.3:c.4565A>G	p.Asn1522Ser	p.N1522S	ENST00000219476	NM_000548.3	1522	aAt/aGt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	129	396	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	213	397	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157454269	157454269	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	148	460	0	ENST00000346085.5:c.2479G>T	p.Gly827Ter	p.G827*	ENST00000346085	NM_020732.3	827	Gga/Tga					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220597	1220597	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	112	380	0	ENST00000326873.7:c.616del	p.Ala206ArgfsTer81	p.A206Rfs*81	ENST00000326873	NM_000455.4	205	gcG/gc					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	38	666	0	ENST00000269571.5:c.2329G>C	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ctg					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0006423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	734	384	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439260	52439260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	621	413	0	ENST00000460680.1:c.982C>T	p.Pro328Ser	p.P328S	ENST00000460680	NM_004656.3	328	Cct/Tct					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66280068	66280068	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	367	492	0	ENST00000273854.3:c.1621C>T	p.Arg541Ter	p.R541*	ENST00000273854	NM_004439.5	541	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112116491	112116491	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	241	323	1	ENST00000257430.4:c.536C>T	p.Ser179Phe	p.S179F	ENST00000257430	NM_000038.5	179	tCc/tTc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32172067	32172067	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1382	820	647	0	ENST00000375023.3:c.2965G>C	p.Gly989Arg	p.G989R	ENST00000375023	NM_004557.3	989	Gga/Cga					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118339515	118339515	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	373	426	1	ENST00000534358.1:c.458C>T	p.Ser153Leu	p.S153L	ENST00000534358	NM_005933.3	153	tCa/tTa					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28602362	28602362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	562	555	0	ENST00000241453.7:c.2006G>A	p.Gly669Glu	p.G669E	ENST00000241453	NM_004119.2	669	gGa/gAa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32968940	32968940	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	341	447	0	ENST00000380152.3:c.9371A>G	p.Asn3124Ser	p.N3124S	ENST00000380152		3124	aAc/aGc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41419913	41419913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	651	612	0	ENST00000373198.4:c.408G>A	p.Trp136Ter	p.W136*	ENST00000373198	NM_133170.3	136	tgG/tgA					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5064861	5064897	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTTTTTCTTTTCTCTGCTTAGGAAATTGAACTTAGC	TCTTTTTCTTTTCTCTGCTTAGGAAATTGAACTTAGC	-			P-0006423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	182	154	0	ENST00000381652.3:c.1057-20_1073del		p.X353_splice	ENST00000381652	NM_004972.3	353						NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91308637	91308638	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	259	398	0	ENST00000355112.3:c.2186_2187delinsTT	p.Ser729Phe	p.S729F	ENST00000355112	NM_000057.2	729	tCC/tTT					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0009151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	35	414	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	47	531	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579473	7579474	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	T			P-0004782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	131	164	0	ENST00000269305.4:c.213_214delinsA	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	71	ccCCcc/ccAcc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0007925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	67	305	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	128	405	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0007925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	42	261	0	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117677849	117677849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	80	396	0	ENST00000368508.3:c.4084G>T	p.Ala1362Ser	p.A1362S	ENST00000368508	NM_002944.2	1362	Gca/Tca					NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30134510	30134510	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	34	379	0	ENST00000263025.4:c.21G>T	p.Gln7His	p.Q7H	ENST00000263025	NM_002746.2	7	caG/caT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003913-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			234	250	487	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29664385	29664385	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003913-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			218	237	375	0	ENST00000358273.4:c.6428-1G>A		p.X2143_splice	ENST00000358273	NM_001042492.2	2143						NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11259419	11259421	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0003913-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			457	274	422	0	ENST00000361445.4:c.4147_4149del	p.Leu1383del	p.L1383del	ENST00000361445	NM_004958.3	1383	CTG/-					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191546	10191546	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	29	657	2	ENST00000256474.2:c.539T>A	p.Ile180Asn	p.I180N	ENST00000256474	NM_000551.3	180	aTc/aAc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162336	47162336	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	18	440	0	ENST00000409792.3:c.3790C>T	p.Gln1264Ter	p.Q1264*	ENST00000409792	NM_014159.6	1264	Caa/Taa					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52668799	52668799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	26	509	0	ENST00000394830.3:c.1120G>T	p.Glu374Ter	p.E374*	ENST00000394830	NM_018313.4	374	Gaa/Taa					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38275758	38275758	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	35	670	0	ENST00000425967.3:c.1511T>A	p.Leu504Gln	p.L504Q	ENST00000425967	NM_001174067.1	504	cTg/cAg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28903860	28903860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	21	461	0	ENST00000282397.4:c.2599G>A	p.Ala867Thr	p.A867T	ENST00000282397	NM_002019.4	867	Gcc/Acc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17942542	17942542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	34	584	0	ENST00000458235.1:c.2746C>T	p.Arg916Trp	p.R916W	ENST00000458235	NM_000215.3	916	Cgg/Tgg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	1962	391	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226595555	226595555	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	233	395	0	ENST00000366794.5:c.76G>T	p.Glu26Ter	p.E26*	ENST00000366794	NM_001618.3	26	Gag/Tag					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12022423	12022423	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	374	632	0	ENST00000396373.4:c.529G>C	p.Glu177Gln	p.E177Q	ENST00000396373	NM_001987.4	177	Gaa/Caa					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78858943	78858943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	91	365	0	ENST00000306801.3:c.1978C>T	p.Arg660Trp	p.R660W	ENST00000306801	NM_020761.2	660	Cgg/Tgg					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1327782	1327782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	209	348	0	ENST00000381566.1:c.99G>C	p.Gln33His	p.Q33H	ENST00000381566		33	caG/caC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576920	7576936	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCAGTGCTAGGAAAGA	GGCAGTGCTAGGAAAGA	-			P-0005895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	359	296	0	ENST00000269305.4:c.920-10_926del		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176863	112176863	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	71	342	0	ENST00000257430.4:c.5572C>T	p.Arg1858Ter	p.R1858*	ENST00000257430	NM_000038.5	1858	Cga/Tga					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55946247	55946247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008800-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			781	58	328	0	ENST00000263923.4:c.3932C>T	p.Ser1311Phe	p.S1311F	ENST00000263923	NM_002253.2	1311	tCc/tTc					NEWRECORD																																																																									
HIST1H3F	0	MSKCC	GRCh37	6	26250820	26250820	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008800-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			989	114	507	0	ENST00000446824.2:c.14A>G	p.Lys5Arg	p.K5R	ENST00000446824	NM_021018.2	5	aAg/aGg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76907705	76907705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008800-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			669	72	265	0	ENST00000373344.5:c.4456G>T	p.Asp1486Tyr	p.D1486Y	ENST00000373344	NM_000489.3	1486	Gat/Tat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007304-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	74	312	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003762-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			512	503	573	1	ENST00000269305.4:c.843C>A	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaA					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206652411	206652411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003762-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			835	459	407	0	ENST00000367120.3:c.1118C>T	p.Thr373Met	p.T373M	ENST00000367120	NM_014002.3	373	aCg/aTg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162722912	162722912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003762-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1513	129	513	1	ENST00000367921.3:c.110C>T	p.Ser37Leu	p.S37L	ENST00000367921	NM_006182.2	37	tCa/tTa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44921908	44921908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	202	398	0	ENST00000377967.4:c.1442G>A	p.Arg481His	p.R481H	ENST00000377967	NM_021140.2	481	cGc/cAc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16255142	16255145	+	frameshift_variant	Frame_Shift_Del	DEL	GAGA	GAGA	-			P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	284	410	0	ENST00000375759.3:c.2415_2418del	p.Glu805AspfsTer3	p.E805Dfs*3	ENST00000375759	NM_015001.2	803	GAGAga/ga					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8075394	8075394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	367	549	0	ENST00000377482.5:c.176C>T	p.Ser59Phe	p.S59F	ENST00000377482	NM_018948.3	59	tCt/tTt					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118365075	118365075	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	249	401	0	ENST00000534358.1:c.5251A>T	p.Lys1751Ter	p.K1751*	ENST00000534358	NM_005933.3	1751	Aaa/Taa					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48650391	48650391	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200509606		P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	264	533	1	ENST00000376670.3:c.361G>A	p.Val121Met	p.V121M	ENST00000376670	NM_002049.3	121	Gtg/Atg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16264106	16264113	+	frameshift_variant	Frame_Shift_Del	DEL	CCCAGAGA	CCCAGAGA	-			P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	230	416	0	ENST00000375759.3:c.10478_10485del	p.Gln3493ArgfsTer23	p.Q3493Rfs*23	ENST00000375759	NM_015001.2	3492	tCCCAGAGA/t					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098809	178098811	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0006963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	328	434	0	ENST00000397062.3:c.234_236del	p.Glu79del	p.E79del	ENST00000397062	NM_006164.4	78	gaAGAg/gag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	134	428	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52584590	52584590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006815-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	133	398	0	ENST00000394830.3:c.4423G>A	p.Gly1475Arg	p.G1475R	ENST00000394830	NM_018313.4	1475	Gga/Aga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	69	150	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120298	94120298	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	66	258	0	ENST00000369303.4:c.753T>A	p.Ser251Arg	p.S251R	ENST00000369303	NM_004440.3	251	agT/agA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425494	49425494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	49	322	0	ENST00000301067.7:c.12994A>G	p.Thr4332Ala	p.T4332A	ENST00000301067	NM_003482.3	4332	Act/Gct					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65543382	65543382	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0006294-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	75	212	0	ENST00000358664.4:c.296-1G>T		p.X99_splice	ENST00000358664	NM_002382.4	99						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	32	299	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48951166	48951166	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	20	485	0	ENST00000267163.4:c.1328C>A	p.Ser443Ter	p.S443*	ENST00000267163	NM_000321.2	443	tCa/tAa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023803	27023803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	38	399	0	ENST00000324856.7:c.909C>A	p.Ser303Arg	p.S303R	ENST00000324856	NM_006015.4	303	agC/agA					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215593645	215593645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	15	464	0	ENST00000260947.4:c.2089G>T	p.Ala697Ser	p.A697S	ENST00000260947	NM_000465.2	697	Gca/Tca					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675583	30675583	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	52	926	0	ENST00000376406.3:c.2773A>C	p.Asn925His	p.N925H	ENST00000376406	NM_014641.2	925	Aac/Cac					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118343712	118343712	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	16	422	0	ENST00000534358.1:c.1838G>C	p.Arg613Pro	p.R613P	ENST00000534358	NM_005933.3	613	cGa/cCa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44942733	44942733	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	17	403	0	ENST00000377967.4:c.3313A>C	p.Lys1105Gln	p.K1105Q	ENST00000377967	NM_021140.2	1105	Aaa/Caa					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	674	446	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	60	534	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0006227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	68	764	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68862208	68862208	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	33	396	0	ENST00000261769.5:c.2295+1G>A		p.X765_splice	ENST00000261769	NM_004360.3	765						NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108122676	108122676	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	23	503	1	ENST00000278616.4:c.1720G>A	p.Glu574Lys	p.E574K	ENST00000278616	NM_000051.3	574	Gaa/Aaa					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15836709	15836709	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0006227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	74	874	0	ENST00000307771.7:c.772-1G>C		p.X258_splice	ENST00000307771	NM_005089.3	258						NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112100	115112101	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	C			P-0006227-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	157	698	0	ENST00000257566.3:c.1639_1640delinsG	p.Ser547ValfsTer85	p.S547Vfs*85	ENST00000257566	NM_016569.3	547	TCt/Gt					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1806171	1806171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	184	503	1	ENST00000260795.2:c.1190G>A	p.Arg397His	p.R397H	ENST00000260795		397	cGc/cAc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696450	47696450	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	278	366	0	ENST00000347630.2:c.373T>G	p.Phe125Val	p.F125V	ENST00000347630	NM_001007230.1	125	Ttt/Gtt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444377	49444377	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	119	258	1	ENST00000301067.7:c.2994delT	p.Met999Ter	p.M999*	ENST00000301067	NM_003482.3	998	ccT/cc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	261	310	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	214	262	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	169	331	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575159	48575159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	19	293	2	ENST00000342988.3:c.353C>T	p.Ala118Val	p.A118V	ENST00000342988	NM_005359.5	118	gCg/gTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs17849781		P-0008906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	372	445	0	ENST00000269305.4:c.832C>G	p.Pro278Ala	p.P278A	ENST00000269305	NM_001126112.2	278	Cct/Gct					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30681726	30681726	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	166	366	0	ENST00000376406.3:c.371C>A	p.Ala124Asp	p.A124D	ENST00000376406	NM_014641.2	124	gCt/gAt					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38271160	38271160	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008906-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	88	152	0	ENST00000425967.3:c.2548C>A	p.Leu850Ile	p.L850I	ENST00000425967	NM_001174067.1	850	Ctc/Atc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	8773	525	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0008514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	433	514	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332						NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55259521	55259521	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	8822	534	1	ENST00000275493.2:c.2579A>T	p.Lys860Ile	p.K860I	ENST00000275493	NM_005228.3	860	aAa/aTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578284	7578284	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008514-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	186	467	0	ENST00000269305.4:c.565del	p.Ala189ProfsTer58	p.A189Pfs*58	ENST00000269305	NM_001126112.2	189	Gcc/cc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212251644	212251644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	217	432	1	ENST00000342788.4:c.3415C>T	p.Arg1139Trp	p.R1139W	ENST00000342788	NM_005235.2	1139	Cgg/Tgg					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242793431	242793431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	71	393	0	ENST00000334409.5:c.646G>A	p.Val216Met	p.V216M	ENST00000334409	NM_005018.2	216	Gtg/Atg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52678799	52678799	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	78	297	0	ENST00000394830.3:c.820A>C	p.Asn274His	p.N274H	ENST00000394830	NM_018313.4	274	Aat/Cat					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89499407	89499407	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	88	353	0	ENST00000336596.2:c.2577C>G	p.Asp859Glu	p.D859E	ENST00000336596	NM_005233.5	859	gaC/gaG					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116340222	116340222	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	99	322	0	ENST00000397752.3:c.1084A>C	p.Met362Leu	p.M362L	ENST00000397752	NM_000245.2	362	Atg/Ctg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18435451	18435451	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	88	395	0	ENST00000266497.5:c.436C>G	p.Pro146Ala	p.P146A	ENST00000266497		146	Cca/Gca					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49422733	49422733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	95	423	0	ENST00000301067.7:c.14260G>C	p.Asp4754His	p.D4754H	ENST00000301067	NM_003482.3	4754	Gat/Cat					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16052787	16052787	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	103	422	0	ENST00000268712.3:c.887G>T	p.Arg296Ile	p.R296I	ENST00000268712	NM_006311.3	296	aGa/aTa					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411202	63411202	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	79	561	0	ENST00000330258.3:c.1965G>T	p.Gln655His	p.Q655H	ENST00000330258	NM_152424.3	655	caG/caT					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32893330	32893330	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	135	610	0	ENST00000380152.3:c.186delT	p.Phe62LeufsTer18	p.F62Lfs*18	ENST00000380152		62	Ttt/tt					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106554780	106554790	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGTAGGTCTG	CTGTAGGTCTG	-			P-0008956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	46	165	0	ENST00000369096.4:c.1903-5_1908delTGTAGGTCTGC		p.X635_splice	ENST00000369096	NM_001198.3	635						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	160	267	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624239	89624272	+	frameshift_variant	Frame_Shift_Del	DEL	ATCAAAGAGATCGTTAGCAGAAACAAAAGGAGAT	ATCAAAGAGATCGTTAGCAGAAACAAAAGGAGAT	-			P-0009412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	80	78	0	ENST00000371953.3:c.18_51del	p.Glu7ArgfsTer6	p.E7Rfs*6	ENST00000371953	NM_000314.4	5	ATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATat/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	455	518	1	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766357	66766389	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-			P-0005993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	70	42	0	ENST00000374690.3:c.1388_1420delGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG	p.Gly463_Gly473del	p.G463_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98244463	98244463	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	53	315	0	ENST00000331920.6:c.607T>C	p.Cys203Arg	p.C203R	ENST00000331920	NM_000264.3	203	Tgt/Cgt					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118347664	118347664	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	243	518	1	ENST00000534358.1:c.3301C>T	p.Arg1101Ter	p.R1101*	ENST00000534358	NM_005933.3	1101	Cga/Tga					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190728676	190728678	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0005993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	284	473	0	ENST00000441310.2:c.2067_2069delAAG	p.Arg690del	p.R690del	ENST00000441310	NM_000534.4	688	aaAAGa/aaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	43	421	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0007116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	42	369	4	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0004936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	44	334	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0004936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	262	647	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46244616	46244616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	34	478	0	ENST00000334344.6:c.2710C>T	p.Gln904Ter	p.Q904*	ENST00000334344	NM_152641.2	904	Cag/Tag					NEWRECORD																																																																									
MYD88	0	MSKCC	GRCh37	3	38182631	38182631	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	46	457	0	ENST00000396334.3:c.784C>G	p.Gln262Glu	p.Q262E	ENST00000396334	NM_002468.4	262	Cag/Gag					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81331997	81331997	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	170	582	2	ENST00000222390.5:c.2087G>T	p.Gly696Val	p.G696V	ENST00000222390	NM_000601.4	696	gGa/gTa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46125006	46125006	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	195	439	0	ENST00000334344.6:c.193G>T	p.Glu65Ter	p.E65*	ENST00000334344	NM_152641.2	65	Gag/Tag					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41547874	41547874	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	86	490	0	ENST00000263253.7:c.2855C>G	p.Ser952Ter	p.S952*	ENST00000263253	NM_001429.3	952	tCa/tGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	263	433	0	ENST00000269305.4:c.764T>G	p.Ile255Ser	p.I255S	ENST00000269305	NM_001126112.2	255	aTc/aGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	176	330	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	31	275	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	31	275	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	31	275	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	132	400	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	62	366	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604694	48604694	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	67	428	0	ENST00000342988.3:c.1516del	p.Val506Ter	p.V506*	ENST00000342988	NM_005359.5	506	Gtg/tg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	231	253	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	269	413	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087961	27087961	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	282	400	0	ENST00000324856.7:c.2248C>T	p.Arg750Ter	p.R750*	ENST00000324856	NM_006015.4	750	Cga/Tga					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729154	66729154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	336	454	0	ENST00000307102.5:c.362G>C	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	121	tGc/tCc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68847282	68847282	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	415	626	1	ENST00000261769.5:c.1204G>T	p.Asp402Tyr	p.D402Y	ENST00000261769	NM_004360.3	402	Gat/Tat					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044472	47044472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	445	285	1	ENST00000329236.7:c.1735C>T	p.Arg579Cys	p.R579C	ENST00000329236	NM_001204466.1	579	Cgc/Tgc					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26068390	26068393	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0007275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	249	575	0	ENST00000435504.4:c.97_100del	p.Glu33PhefsTer10	p.E33Ffs*10	ENST00000435504		33	GAAAtt/tt					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678454	88678468	+	inframe_deletion	In_Frame_Del	DEL	CCCTCGGAAATCTCT	CCCTCGGAAATCTCT	-			P-0007275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	420	667	0	ENST00000360948.2:c.1068_1082del	p.Glu357_Gly361del	p.E357_G361del	ENST00000360948	NM_001012338.2	356	ggAGAGATTTCCGAGGGc/ggc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157522198	157522198	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	233	345	0	ENST00000346085.5:c.4472del	p.Pro1491GlnfsTer3	p.P1491Qfs*3	ENST00000346085	NM_020732.3	1490	taC/ta					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	19	120	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971177	21971177	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	19	120	0	ENST00000304494.5:c.181G>T	p.Glu61Ter	p.E61*	ENST00000304494	NM_000077.4	61	Gag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	161	251	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	223	368	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14024573	14024573	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	77	238	0	ENST00000311895.7:c.799C>T	p.Arg267Cys	p.R267C	ENST00000311895	NM_005236.2	267	Cgc/Tgc					NEWRECORD																																																																									
VTCN1	0	MSKCC	GRCh37	1	117699513	117699513	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	54	216	2	ENST00000369458.3:c.128C>T	p.Ala43Val	p.A43V	ENST00000369458	NM_024626.3	43	gCc/gTc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41274897	41274897	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	122	282	0	ENST00000349496.5:c.1147T>C	p.Trp383Arg	p.W383R	ENST00000349496	NM_001904.3	383	Tgg/Cgg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44936072	44936072	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	201	220	0	ENST00000377967.4:c.2832+1G>T		p.X944_splice	ENST00000377967	NM_021140.2	944						NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044603	47044610	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTGTGTT	GGTGTGTT	-			P-0007060-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	162	197	0	ENST00000329236.7:c.1866+2_1866+9del		p.X622_splice	ENST00000329236	NM_001204466.1	622						NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	321	229	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99172064	99172064	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	277	258	0	ENST00000074304.5:c.1630C>T	p.Arg544Cys	p.R544C	ENST00000074304	NM_001134224.1	544	Cgt/Tgt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66231689	66231689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	247	333	1	ENST00000273854.3:c.2011G>A	p.Glu671Lys	p.E671K	ENST00000273854	NM_004439.5	671	Gaa/Aaa					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135797247	135797284	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TGTAATGAGAACGCAAAAAGGAGACGAAGTTGCAAGGG	TGTAATGAGAACGCAAAAAGGAGACGAAGTTGCAAGGG	-			P-0005495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	76	317	0	ENST00000298552.3:c.585_622del	p.Tyr195Ter	p.Y195*	ENST00000298552	NM_001162426.1	195	taCCCTTGCAACTTCGTCTCCTTTTTGCGTTCTCATTACAgt/tagt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	551	437	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187516851	187516851	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	45	284	0	ENST00000441802.2:c.13130A>T	p.Asp4377Val	p.D4377V	ENST00000441802	NM_005245.3	4377	gAt/gTt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628224	187628224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	58	361	0	ENST00000441802.2:c.2758G>A	p.Val920Ile	p.V920I	ENST00000441802	NM_005245.3	920	Gtt/Att					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38963132	38963132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	51	336	0	ENST00000357387.3:c.1412C>T	p.Ala471Val	p.A471V	ENST00000357387	NM_152756.3	471	gCa/gTa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55227868	55227868	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4535	5010	385	0	ENST00000275493.2:c.1335A>G	p.Ile445Met	p.I445M	ENST00000275493	NM_005228.3	445	atA/atG					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	348215	348215	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	45	266	0	ENST00000262320.3:c.1291C>T	p.Pro431Ser	p.P431S	ENST00000262320	NM_003502.3	431	Ccc/Tcc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	22	314	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0007419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	25	411	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86674233	86674233	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	20	288	1	ENST00000274376.6:c.2365C>T	p.Arg789Ter	p.R789*	ENST00000274376	NM_002890.2	789	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	31	293	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	19	202	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	26	155	1	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	37	231	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544747	65544747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	19	279	0	ENST00000358664.4:c.179G>A	p.Arg60Gln	p.R60Q	ENST00000358664	NM_002382.4	60	cGg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	72	370	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40730831	40730831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009305-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	44	311	0	ENST00000373198.4:c.3704G>A	p.Arg1235His	p.R1235H	ENST00000373198	NM_133170.3	1235	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	251	419	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175524	112175524	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	59	245	0	ENST00000257430.4:c.4233del	p.Ser1411ArgfsTer4	p.S1411Rfs*4	ENST00000257430	NM_000038.5	1411	agT/ag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	114	252	1	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521721	89521721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	132	333	2	ENST00000336596.2:c.2798C>T	p.Thr933Met	p.T933M	ENST00000336596	NM_005233.5	933	aCg/aTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	142	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	134	492	0	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760421	133760421	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	145	363	1	ENST00000318560.5:c.2744C>T	p.Ser915Leu	p.S915L	ENST00000318560	NM_005157.4	915	tCg/tTg					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242794812	242794812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	53	407	0	ENST00000334409.5:c.397C>G	p.Gln133Glu	p.Q133E	ENST00000334409	NM_005018.2	133	Cag/Gag					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765876	66765876	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	121	358	0	ENST00000374690.3:c.888C>G	p.Asp296Glu	p.D296E	ENST00000374690	NM_000044.3	296	gaC/gaG					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	244	395	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916929	178916937	+	inframe_deletion	In_Frame_Del	DEL	GGCAACCGT	GGCAACCGT	-			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	192	789	0	ENST00000263967.3:c.317_325delGCAACCGTG	p.Gly106_Arg108del	p.G106_R108del	ENST00000263967	NM_006218.2	106	GGCAACCGT/-					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	140	372	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99467824	99467824	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142608976		P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	144	494	0	ENST00000268035.6:c.2693C>T	p.Pro898Leu	p.P898L	ENST00000268035	NM_000875.3	898	cCg/cTg					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81922869	81922869	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	287	775	0	ENST00000359376.3:c.858T>G	p.Phe286Leu	p.F286L	ENST00000359376	NM_002661.3	286	ttT/ttG					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7983583	7983583	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	33	417	0	ENST00000319144.4:c.724A>T	p.Ile242Phe	p.I242F	ENST00000319144	NM_001139.2	242	Att/Ttt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173571	112173571	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	143	359	0	ENST00000257430.4:c.2280del	p.Glu761LysfsTer4	p.E761Kfs*4	ENST00000257430	NM_000038.5	760	ctA/ct					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86670129	86670130	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	92	328	0	ENST00000274376.6:c.1927_1928del	p.Val643LeufsTer2	p.V643Lfs*2	ENST00000274376	NM_002890.2	642	ttTGtc/tttc					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202151262	202151265	+	frameshift_variant	Frame_Shift_Del	DEL	AGAT	AGAT	-			P-0008377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1138	146	713	0	ENST00000358485.4:c.1562_1565del	p.Gln521ArgfsTer8	p.Q521Rfs*8	ENST00000358485	NM_001080125.1	521	cAGATg/cg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47155399	47155399	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	280	497	0	ENST00000409792.3:c.4682G>C	p.Gly1561Ala	p.G1561A	ENST00000409792	NM_014159.6	1561	gGc/gCc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53239642	53239642	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	386	314	0	ENST00000375401.3:c.1700T>G	p.Leu567Arg	p.L567R	ENST00000375401	NM_004187.3	567	cTt/cGt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52702609	52702609	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	141	405	0	ENST00000394830.3:c.289del	p.Ile97SerfsTer5	p.I97Sfs*5	ENST00000394830	NM_018313.4	97	Atc/tc					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	126	312	1	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123279564	123279564	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	309	443	0	ENST00000358487.5:c.868T>C	p.Trp290Arg	p.W290R	ENST00000358487	NM_000141.4	290	Tgg/Cgg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	112	327	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	83	379	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473722	67473722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	148	412	1	ENST00000327367.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000327367	NM_005902.3	268	Cgc/Tgc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134825358	134825358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	159	435	0	ENST00000398015.3:c.874C>G	p.Arg292Gly	p.R292G	ENST00000398015	NM_004441.4	292	Cgc/Ggc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	356	403	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	116	308	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49934988	49934988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1522	106	757	0	ENST00000296474.3:c.2011G>C	p.Asp671His	p.D671H	ENST00000296474	NM_002447.2	671	Gac/Cac					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112090687	112090687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	58	362	0	ENST00000257430.4:c.100C>T	p.Leu34Phe	p.L34F	ENST00000257430	NM_000038.5	34	Ctt/Ttt					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87322806	87322806	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144037140		P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	113	347	2	ENST00000277120.3:c.407G>A	p.Arg136His	p.R136H	ENST00000277120		136	cGt/cAt					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21549395	21549395	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143631255		P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	117	229	0	ENST00000382592.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000382592	NM_014572.2	961	Cgg/Tgg					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28592632	28592632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	118	551	0	ENST00000241453.7:c.2513G>A	p.Ser838Asn	p.S838N	ENST00000241453	NM_004119.2	838	aGt/aAt					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	329	484	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52443591	52443617	+	inframe_deletion	In_Frame_Del	DEL	TCGTAGATCTCCTCCACTTGCACCCCC	TCGTAGATCTCCTCCACTTGCACCCCC	-			P-0006971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	190	455	0	ENST00000460680.1:c.75_101del	p.Lys25_Asp34delinsAsn	p.K25_D34delinsN	ENST00000460680	NM_004656.3	25	aaGGGGGTGCAAGTGGAGGAGATCTACGAc/aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578466	7578466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	371	630	0	ENST00000269305.4:c.464C>A	p.Thr155Asn	p.T155N	ENST00000269305	NM_001126112.2	155	aCc/aAc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49424401	49424401	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	267	642	0	ENST00000301067.7:c.13822T>A	p.Ser4608Thr	p.S4608T	ENST00000301067	NM_003482.3	4608	Tcc/Acc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	31	509	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579350	7579350	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006057-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	88	522	0	ENST00000269305.4:c.337T>G	p.Phe113Val	p.F113V	ENST00000269305	NM_001126112.2	113	Ttc/Gtc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	132	207	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434745	49434745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	42	193	0	ENST00000301067.7:c.6808G>A	p.Glu2270Lys	p.E2270K	ENST00000301067	NM_003482.3	2270	Gag/Aag					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	131	241	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138664886	138664886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	14	56	0	ENST00000330315.3:c.679G>A	p.Ala227Thr	p.A227T	ENST00000330315	NM_023067.3	227	Gca/Aca					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916845	178916845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1163	219	697	0	ENST00000263967.3:c.232G>A	p.Glu78Lys	p.E78K	ENST00000263967	NM_006218.2	78	Gaa/Aaa					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153244100	153244100	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	200	286	0	ENST00000281708.4:c.2057T>A	p.Val686Asp	p.V686D	ENST00000281708	NM_033632.3	686	gTt/gAt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55273086	55273086	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	188	374	0	ENST00000275493.2:c.3409G>T	p.Glu1137Ter	p.E1137*	ENST00000275493	NM_005228.3	1137	Gag/Tag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420183	49420183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	232	405	0	ENST00000301067.7:c.15566G>A	p.Gly5189Glu	p.G5189E	ENST00000301067	NM_003482.3	5189	gGa/gAa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444166	49444166	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	114	356	0	ENST00000301067.7:c.3205G>T	p.Glu1069Ter	p.E1069*	ENST00000301067	NM_003482.3	1069	Gag/Tag					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56482368	56482368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	236	395	0	ENST00000267101.3:c.916C>T	p.Pro306Ser	p.P306S	ENST00000267101	NM_001982.3	306	Cct/Tct					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57858928	57858928	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	191	589	0	ENST00000228682.2:c.424C>T	p.Gln142Ter	p.Q142*	ENST00000228682	NM_005269.2	142	Caa/Taa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115114241	115114241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	102	372	0	ENST00000257566.3:c.976G>A	p.Asp326Asn	p.D326N	ENST00000257566	NM_016569.3	326	Gat/Aat					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91308618	91308618	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	81	405	0	ENST00000355112.3:c.2167C>T	p.Gln723Ter	p.Q723*	ENST00000355112	NM_000057.2	723	Caa/Taa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2131719	2131719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	83	558	0	ENST00000219476.3:c.3734G>A	p.Arg1245Gln	p.R1245Q	ENST00000219476	NM_000548.3	1245	cGg/cAg					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56401549	56401549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	167	478	0	ENST00000348428.3:c.1411G>A	p.Asp471Asn	p.D471N	ENST00000348428	NM_006785.3	471	Gat/Aat					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1206916	1206916	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	57	246	0	ENST00000326873.7:c.4G>C	p.Glu2Gln	p.E2Q	ENST00000326873	NM_000455.4	2	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	308	541	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139413951	139413951	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	469	651	0	ENST00000277541.6:c.809delG	p.Gly270ValfsTer7	p.G270Vfs*7	ENST00000277541	NM_017617.3	270	gGt/gt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16258163	16258163	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144013241		P-0009560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	271	448	0	ENST00000375759.3:c.5428C>T	p.Pro1810Ser	p.P1810S	ENST00000375759	NM_015001.2	1810	Cca/Tca					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153332672	153332672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	187	683	0	ENST00000281708.4:c.284A>G	p.Gln95Arg	p.Q95R	ENST00000281708	NM_033632.3	95	cAa/cGa					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1282734	1282734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	190	373	1	ENST00000310581.5:c.1579G>A	p.Gly527Ser	p.G527S	ENST00000310581	NM_198253.2	527	Ggc/Agc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108213992	108213992	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	152	364	0	ENST00000278616.4:c.8312C>A	p.Thr2771Lys	p.T2771K	ENST00000278616	NM_000051.3	2771	aCa/aAa					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28589385	28589385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	331	558	5	ENST00000241453.7:c.2662C>A	p.Pro888Thr	p.P888T	ENST00000241453	NM_004119.2	888	Cct/Act					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89355052	89355052	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	448	859	0	ENST00000301030.4:c.628A>T	p.Asn210Tyr	p.N210Y	ENST00000301030	NM_001256183.1	210	Aac/Tac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	157	318	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152129385	152129385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	91	322	0	ENST00000206249.3:c.338C>T	p.Pro113Leu	p.P113L	ENST00000206249	NM_000125.3	113	cCg/cTg					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55953894	55953894	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	90	343	0	ENST00000263923.4:c.3542C>A	p.Ser1181Ter	p.S1181*	ENST00000263923	NM_002253.2	1181	tCa/tAa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41566520	41566520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	145	557	0	ENST00000263253.7:c.4397G>A	p.Trp1466Ter	p.W1466*	ENST00000263253	NM_001429.3	1466	tGg/tAg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266029	41266287	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGC	AGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGC	-			P-0006890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	45	390	0	ENST00000349496.5:c.30_241+47del		p.X10_splice	ENST00000349496	NM_001904.3	10						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	46	163	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191488	10191488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	371	224	0	ENST00000256474.2:c.481C>T	p.Arg161Ter	p.R161*	ENST00000256474	NM_000551.3	161	Cga/Tga					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106552837	106552837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	258	465	2	ENST00000369096.4:c.802C>T	p.Arg268Cys	p.R268C	ENST00000369096	NM_001198.3	268	Cgt/Tgt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	343	430	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116397780	116397780	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	359	700	0	ENST00000397752.3:c.2054G>A	p.Gly685Glu	p.G685E	ENST00000397752	NM_000245.2	685	gGg/gAg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717679	89717679	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	70	426	0	ENST00000371953.3:c.704A>G	p.Glu235Gly	p.E235G	ENST00000371953	NM_000314.4	235	gAa/gGa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46205335	46205335	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	273	370	1	ENST00000334344.6:c.418+1G>A		p.X140_splice	ENST00000334344	NM_152641.2	140						NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42797831	42797831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	446	495	0	ENST00000575354.2:c.3883C>T	p.Pro1295Ser	p.P1295S	ENST00000575354	NM_015125.3	1295	Ccg/Tcg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577105	7577106	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0005604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	662	798	0	ENST00000269305.4:c.832_833delCCinsTT	p.Pro278Phe	p.P278F	ENST00000269305	NM_001126112.2	278	CCt/TTt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183872	10183872	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	10	175	0	ENST00000256474.2:c.340+1G>A		p.X114_splice	ENST00000256474	NM_000551.3	114						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47098916	47098916	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	34	320	0	ENST00000409792.3:c.6358del	p.Glu2120AsnfsTer27	p.E2120Nfs*27	ENST00000409792	NM_014159.6	2120	Gaa/aa					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25469592	25469592	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	66	482	0	ENST00000264709.3:c.1176G>T	p.Glu392Asp	p.E392D	ENST00000264709	NM_175629.2	392	gaG/gaT					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134968200	134968200	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143309901		P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	57	455	2	ENST00000398015.3:c.2713C>T	p.Arg905Cys	p.R905C	ENST00000398015	NM_004441.4	905	Cgc/Tgc					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67575430	67575430	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	47	319	0	ENST00000274335.5:c.503A>G	p.Asp168Gly	p.D168G	ENST00000274335		168	gAt/gGt					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149497286	149497286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	23	435	0	ENST00000261799.4:c.3032C>A	p.Ala1011Asp	p.A1011D	ENST00000261799	NM_002609.3	1011	gCc/gAc					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149500798	149500798	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	34	474	1	ENST00000261799.4:c.2432C>A	p.Ala811Asp	p.A811D	ENST00000261799	NM_002609.3	811	gCc/gAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	100	401	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245495	46245495	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	31	247	1	ENST00000334344.6:c.3589G>T	p.Ala1197Ser	p.A1197S	ENST00000334344	NM_152641.2	1197	Gct/Tct					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993483	72993483	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	36	647	0	ENST00000268489.5:c.562G>T	p.Ala188Ser	p.A188S	ENST00000268489	NM_006885.3	188	Gca/Tca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	51	387	0	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29533361	29533361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	28	311	0	ENST00000358273.4:c.1364G>T	p.Gly455Val	p.G455V	ENST00000358273	NM_001042492.2	455	gGa/gTa					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	756815	756815	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	35	406	2	ENST00000314574.4:c.13A>G	p.Lys5Glu	p.K5E	ENST00000314574	NM_005433.3	5	Aaa/Gaa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5220326	5220326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	18	422	0	ENST00000357368.4:c.3494G>T	p.Arg1165Leu	p.R1165L	ENST00000357368	NM_002850.3	1165	cGt/cTt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187518136	187518145	+	frameshift_variant	Frame_Shift_Del	DEL	AACGATTCCA	AACGATTCCA	-			P-0009020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	43	499	0	ENST00000441802.2:c.12549_12558del	p.Ile4183MetfsTer20	p.I4183Mfs*20	ENST00000441802	NM_005245.3	4183	atTGGAATCGTT/at					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178947827	178947827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	397	585	1	ENST00000263967.3:c.2702G>T	p.Cys901Phe	p.C901F	ENST00000263967	NM_006218.2	901	tGt/tTt					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43601863	43601863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	332	628	0	ENST00000355710.3:c.907G>A	p.Val303Met	p.V303M	ENST00000355710	NM_020975.4	303	Gtg/Atg					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0006431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	258	314	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61711074	61711074	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	221	424	0	ENST00000401558.2:c.2675C>T	p.Thr892Met	p.T892M	ENST00000401558	NM_003400.3	892	aCg/aTg					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29130391	29130391	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	224	332	0	ENST00000328354.6:c.319G>A	p.Glu107Lys	p.E107K	ENST00000328354	NM_007194.3	107	Gaa/Aaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	67	377	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	154	582	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212537965	212537965	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	53	397	1	ENST00000342788.4:c.1640A>C	p.Glu547Ala	p.E547A	ENST00000342788	NM_005235.2	547	gAg/gCg					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78865638	78865638	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0005788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	43	340	0	ENST00000306801.3:c.2101+1G>T		p.X701_splice	ENST00000306801	NM_020761.2	701						NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39932171	39932171	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	112	375	0	ENST00000378444.4:c.2428C>T	p.Arg810Ter	p.R810*	ENST00000378444	NM_001123385.1	810	Cga/Tga					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120523	70120533	+	coding_sequence_variant,3_prime_UTR_variant	Frame_Shift_Del	DEL	CCTTGAGGAGG	CCTTGAGGAGG	-			P-0005788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	356	95	0	ENST00000245479.2:c.1528_*8delTGAGGAGGCCT		p.*510fs*	ENST00000245479	NM_000346.3	509						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	193	509	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0006138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	86	540	0	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38275492	38275492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	110	370	0	ENST00000425967.3:c.1541C>T	p.Pro514Leu	p.P514L	ENST00000425967	NM_001174067.1	514	cCc/cTc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8465638	8465638	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	74	436	0	ENST00000356435.5:c.3542G>T	p.Arg1181Leu	p.R1181L	ENST00000356435		1181	cGt/cTt					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	280	520	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060816	38060816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	578	734	0	ENST00000250448.2:c.1173C>A	p.Asp391Glu	p.D391E	ENST00000250448	NM_004496.3	391	gaC/gaA					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29107980	29107980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	275	583	0	ENST00000328354.6:c.709G>A	p.Ala237Thr	p.A237T	ENST00000328354	NM_007194.3	237	Gct/Act					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	16	435	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0009758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	22	454	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0000978-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			366	158	649	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41385183	41385183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000978-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			899	147	657	5	ENST00000373198.4:c.778C>T	p.Arg260Trp	p.R260W	ENST00000373198	NM_133170.3	260	Cgg/Tgg					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46739353	46739353	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000978-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			614	248	679	0	ENST00000371975.4:c.1544A>G	p.Lys515Arg	p.K515R	ENST00000371975	NM_003579.3	515	aAa/aGa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175106	112175106	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0000978-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			237	66	293	0	ENST00000257430.4:c.3815C>G	p.Ser1272Ter	p.S1272*	ENST00000257430	NM_000038.5	1272	tCa/tGa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9943734	9943734	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000978-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			666	162	503	1	ENST00000330684.3:c.1207G>A	p.Asp403Asn	p.D403N	ENST00000330684	NM_001134407.1	403	Gac/Aac					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561156	9561156	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000978-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			734	134	462	0	ENST00000353224.5:c.626C>A	p.Pro209Gln	p.P209Q	ENST00000353224	NM_177990.2	209	cCa/cAa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175783	112175786	+	frameshift_variant	Frame_Shift_Del	DEL	GATG	GATG	-			P-0000978-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			365	106	385	0	ENST00000257430.4:c.4495_4498del	p.Gly1499PhefsTer7	p.G1499Ffs*7	ENST00000257430	NM_000038.5	1498	GATGga/ga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175729	112175777	+	frameshift_variant	Frame_Shift_Del	DEL	CAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTA	CAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTA	-			P-0000978-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			364	101	451	0	ENST00000257430.4:c.4439_4487del	p.Gln1480LeufsTer11	p.Q1480Lfs*11	ENST00000257430	NM_000038.5	1480	CAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTAct/ct					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116411887	116411901	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTCTCTCTGTTTTAA	TTCTCTCTGTTTTAA	-			P-0000978-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			183	204	314	0	ENST00000397752.3:c.2888-16_2888-2del		p.X963_splice	ENST00000397752	NM_000245.2	963						NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	150	299	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	133	354	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	272	562	1	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	459	506	1	ENST00000269305.4:c.614A>T	p.Tyr205Phe	p.Y205F	ENST00000269305	NM_001126112.2	205	tAt/tTt					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12871776	12871776	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	219	201	0	ENST00000228872.4:c.493A>T	p.Lys165Ter	p.K165*	ENST00000228872	NM_004064.3	165	Aaa/Taa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133241952	133241952	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	160	423	0	ENST00000320574.5:c.2404G>C	p.Asp802His	p.D802H	ENST00000320574	NM_006231.2	802	Gac/Cac					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133244953	133244953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	225	559	0	ENST00000320574.5:c.2162G>C	p.Arg721Thr	p.R721T	ENST00000320574	NM_006231.2	721	aGa/aCa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2114332	2114332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	1128	559	0	ENST00000219476.3:c.1503C>A	p.Asp501Glu	p.D501E	ENST00000219476	NM_000548.3	501	gaC/gaA					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117686796	117686796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009987-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	1177	412	0	ENST00000368508.3:c.2921C>T	p.Ala974Val	p.A974V	ENST00000368508	NM_002944.2	974	gCg/gTg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123220516	123220516	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008816-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	61	711	0	ENST00000218089.9:c.3173C>T	p.Ser1058Leu	p.S1058L	ENST00000218089	NM_001042749.1	1058	tCa/tTa					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29910337	29910337	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	301	471	1	ENST00000376809.5:c.7G>T	p.Val3Phe	p.V3F	ENST00000376809	NM_002116.7	3	Gtc/Ttc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528381	157528381	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009970-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	196	405	1	ENST00000346085.5:c.6106G>A	p.Asp2036Asn	p.D2036N	ENST00000346085	NM_020732.3	2036	Gac/Aac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	54	549	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	44	730	1	ENST00000269305.4:c.833C>A	p.Pro278His	p.P278H	ENST00000269305	NM_001126112.2	278	cCt/cAt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	116	120	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	64	367	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	134	425	1	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916836	178916836	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1829	166	679	0	ENST00000263967.3:c.223C>G	p.Gln75Glu	p.Q75E	ENST00000263967	NM_006218.2	75	Caa/Gaa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48934194	48934194	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	159	355	1	ENST00000267163.4:c.649C>T	p.Gln217Ter	p.Q217*	ENST00000267163	NM_000321.2	217	Cag/Tag					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120478182	120478182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	127	324	0	ENST00000256646.2:c.3568G>A	p.Glu1190Lys	p.E1190K	ENST00000256646	NM_024408.3	1190	Gag/Aag					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42059348	42059348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1885	186	653	1	ENST00000219905.7:c.9068C>T	p.Ser3023Leu	p.S3023L	ENST00000219905	NM_001164273.1	3023	tCa/tTa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610349	10610349	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1128	137	378	0	ENST00000171111.5:c.361G>T	p.Glu121Ter	p.E121*	ENST00000171111	NM_203500.1	121	Gag/Tag					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36026164	36026164	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1435	150	436	0	ENST00000358208.4:c.766C>G	p.Gln256Glu	p.Q256E	ENST00000358208		256	Cag/Gag					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765461	66765461	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	102	369	0	ENST00000374690.3:c.473C>T	p.Ser158Leu	p.S158L	ENST00000374690	NM_000044.3	158	tCa/tTa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041683	47041683	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1563	152	539	0	ENST00000329236.7:c.1674del	p.Glu560ArgfsTer66	p.E560Rfs*66	ENST00000329236	NM_001204466.1	558	ggC/gg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0008318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	25	632	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68842472	68842472	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0008318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	36	398	1	ENST00000261769.5:c.531+2T>A		p.X177_splice	ENST00000261769	NM_004360.3	177						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	456	493	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	153	354	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604787	48604787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	184	347	0	ENST00000342988.3:c.1609G>T	p.Asp537Tyr	p.D537Y	ENST00000342988	NM_005359.5	537	Gac/Tac					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0009062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	107	193	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441431	52441431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	85	440	1	ENST00000460680.1:c.421C>T	p.His141Tyr	p.H141Y	ENST00000460680	NM_004656.3	141	Cat/Tat					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151859549	151859549	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	90	436	1	ENST00000262189.6:c.11113G>C	p.Asp3705His	p.D3705H	ENST00000262189	NM_170606.2	3705	Gac/Cac					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42005696	42005696	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0005140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	78	309	0	ENST00000219905.7:c.3430+2T>C		p.X1144_splice	ENST00000219905	NM_001164273.1	1144						NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11094904	11094904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	94	478	1	ENST00000344626.4:c.77C>T	p.Ala26Val	p.A26V	ENST00000344626	NM_003072.3	26	gCc/gTc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	670	294	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	207	333	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135778016	135778016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	195	316	0	ENST00000298552.3:c.2367C>G	p.Phe789Leu	p.F789L	ENST00000298552	NM_001162426.1	789	ttC/ttG					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2278	446	531	1	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	2256	581	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	503	668	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12653551	12653551	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs140884322		P-0005034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	105	544	0	ENST00000251849.4:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000251849	NM_002880.3	73	cGa/cAa					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371684	55371684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	192	461	0	ENST00000297316.4:c.374G>A	p.Arg125His	p.R125H	ENST00000297316	NM_022454.3	125	cGc/cAc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72830292	72830292	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	99	660	0	ENST00000268489.5:c.6289T>G	p.Phe2097Val	p.F2097V	ENST00000268489	NM_006885.3	2097	Ttc/Gtc					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	177	536	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	61	295	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220644	1220644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	130	524	0	ENST00000326873.7:c.662C>T	p.Pro221Leu	p.P221L	ENST00000326873	NM_000455.4	221	cCg/cTg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162746077	162746077	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	111	415	1	ENST00000367921.3:c.2200A>G	p.Asn734Asp	p.N734D	ENST00000367921	NM_006182.2	734	Aac/Gac					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89390976	89390976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	80	521	0	ENST00000336596.2:c.1042C>A	p.Pro348Thr	p.P348T	ENST00000336596	NM_005233.5	348	Ccc/Acc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106524675	106524675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	46	349	1	ENST00000359195.3:c.2836G>A	p.Asp946Asn	p.D946N	ENST00000359195	NM_002649.2	946	Gac/Aac					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64137241	64137241	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	60	463	1	ENST00000334205.4:c.1673G>T	p.Arg558Leu	p.R558L	ENST00000334205	NM_003942.2	558	cGg/cTg					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77103393	77103393	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1184	117	543	0	ENST00000356341.3:c.173T>C	p.Ile58Thr	p.I58T	ENST00000356341	NM_002576.4	58	aTt/aCt					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103524687	103524687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	57	487	0	ENST00000355739.4:c.2818G>T	p.Val940Leu	p.V940L	ENST00000355739	NM_000123.3	940	Gtg/Ttg					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100615730	100615730	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	55	467	1	ENST00000308731.7:c.602C>T	p.Pro201Leu	p.P201L	ENST00000308731	NM_000061.2	201	cCa/cTa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0003738-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			733	45	260	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30715708	30715708	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003738-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			655	38	281	0	ENST00000359013.4:c.1441G>A	p.Glu481Lys	p.E481K	ENST00000359013	NM_001024847.2	481	Gaa/Aaa					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042451	42042451	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0003738-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1429	125	676	0	ENST00000219905.7:c.6646C>T	p.Gln2216Ter	p.Q2216*	ENST00000219905	NM_001164273.1	2216	Cag/Tag					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435734	56435734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003738-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			394	40	173	0	ENST00000407977.2:c.1403C>T	p.Ser468Leu	p.S468L	ENST00000407977		468	tCa/tTa					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30057193	30057193	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0003738-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			610	55	302	0	ENST00000338641.4:c.676-1G>A		p.X226_splice	ENST00000338641	NM_000268.3	226						NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47641478	47641478	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1286	236	741	0	ENST00000233146.2:c.863A>T	p.Gln288Leu	p.Q288L	ENST00000233146	NM_000251.2	288	cAg/cTg					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148507476	148507476	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005826-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	575	488	0	ENST00000320356.2:c.1978G>C	p.Gly660Arg	p.G660R	ENST00000320356	NM_004456.4	660	Ggg/Cgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	39	215	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	23	186	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610359	10610359	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	34	198	0	ENST00000171111.5:c.351G>T	p.Glu117Asp	p.E117D	ENST00000171111	NM_203500.1	117	gaG/gaT					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209106719	209106719	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0007185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	234	473	0	ENST00000345146.2:c.849A>C	p.Gln283His	p.Q283H	ENST00000345146	NM_005896.2	283	caA/caC					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142178158	142178158	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	61	372	0	ENST00000350721.4:c.7260A>T	p.Lys2420Asn	p.K2420N	ENST00000350721	NM_001184.3	2420	aaA/aaT					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174268	112174268	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	185	547	0	ENST00000257430.4:c.2977A>T	p.Lys993Ter	p.K993*	ENST00000257430	NM_000038.5	993	Aag/Tag					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176638915	176638915	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1354	125	552	0	ENST00000439151.2:c.3515A>C	p.Lys1172Thr	p.K1172T	ENST00000439151	NM_022455.4	1172	aAg/aCg					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152332799	152332799	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	227	580	0	ENST00000206249.3:c.1105G>T	p.Asp369Tyr	p.D369Y	ENST00000206249	NM_000125.3	369	Gat/Tat					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162683641	162683641	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	135	538	0	ENST00000366898.1:c.328T>A	p.Ser110Thr	p.S110T	ENST00000366898	NM_004562.2	110	Tca/Aca					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145740417	145740417	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1307	113	460	0	ENST00000428558.2:c.1523A>C	p.Lys508Thr	p.K508T	ENST00000428558	NM_004260.3	508	aAg/aCg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49447842	49447842	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	124	451	0	ENST00000301067.7:c.592G>A	p.Ala198Thr	p.A198T	ENST00000301067	NM_003482.3	198	Gcg/Acg					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023366	31023366	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	124	404	0	ENST00000375687.4:c.2851G>C	p.Asp951His	p.D951H	ENST00000375687	NM_015338.5	951	Gat/Cat					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54945293	54945293	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	52	215	0	ENST00000312783.6:c.1133T>G	p.Leu378Arg	p.L378R	ENST00000312783	NM_198436.1	378	cTt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579420	7579427	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGGCTG	GGGGGCTG	-			P-0007185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	377	521	0	ENST00000269305.4:c.260_267del	p.Pro87LeufsTer59	p.P87Lfs*59	ENST00000269305	NM_001126112.2	87	cCAGCCCCC/c					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114925597	114925597	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1535	292	853	3	ENST00000543371.1:c.1679del	p.Pro560GlnfsTer42	p.P560Qfs*42	ENST00000543371	NM_001198531.1	559	Ccc/cc					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72400938	72400938	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	131	1003	0	ENST00000357731.5:c.233T>G	p.Ile78Ser	p.I78S	ENST00000357731	NM_173808.2	78	aTt/aGt					NEWRECORD																																																																									
LMO1	0	MSKCC	GRCh37	11	8251967	8251967	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	118	484	0	ENST00000335790.3:c.110T>C	p.Leu37Pro	p.L37P	ENST00000335790	NM_002315.2	37	cTg/cCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	90	365	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56482369	56482369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	83	383	0	ENST00000267101.3:c.917C>G	p.Pro306Arg	p.P306R	ENST00000267101	NM_001982.3	306	cCt/cGt					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41726677	41726677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	74	344	0	ENST00000301178.4:c.222G>C	p.Gln74His	p.Q74H	ENST00000301178	NM_021913.4	74	caG/caC					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29554254	29554475	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAAGAGTGATGGCACTGCTGAGGCGCATTGAGCATCCCACTGCAGGAAACACTGAGGTATGCCCTTAGCAACAGAAACACCCCTCCCAGGCGCCCACCCTCAATTTGGAAGCCTCTTGTTACATATGTGTGATCAGGAATAGCTTTTGAAGTAAATCCAAGATACGTGCATATTACAAGTATAATATCTGAGTATTTAATATACATCAAGTTTGAAACTTGG	AAAGAGTGATGGCACTGCTGAGGCGCATTGAGCATCCCACTGCAGGAAACACTGAGGTATGCCCTTAGCAACAGAAACACCCCTCCCAGGCGCCCACCCTCAATTTGGAAGCCTCTTGTTACATATGTGTGATCAGGAATAGCTTTTGAAGTAAATCCAAGATACGTGCATATTACAAGTATAATATCTGAGTATTTAATATACATCAAGTTTGAAACTTGG	-			P-0004758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	79	304	0	ENST00000358273.4:c.2270_2326-66del		p.X757_splice	ENST00000358273	NM_001042492.2	757						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	106	434	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	188	375	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670813	134670813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	45	231	0	ENST00000398015.3:c.724G>A	p.Gly242Arg	p.G242R	ENST00000398015	NM_004441.4	242	Ggg/Agg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	206	357	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53243999	53243999	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	286	452	4	ENST00000375401.3:c.994C>T	p.Arg332Ter	p.R332*	ENST00000375401	NM_004187.3	332	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	34	445	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0009693-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	40	516	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578505	7578505	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	92	352	0	ENST00000269305.4:c.425delC	p.Pro142LeufsTer28	p.P142Lfs*28	ENST00000269305	NM_001126112.2	142	cCt/ct					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187584505	187584505	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	85	358	0	ENST00000441802.2:c.3528C>G	p.Tyr1176Ter	p.Y1176*	ENST00000441802	NM_005245.3	1176	taC/taG					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717629	89717629	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	76	317	0	ENST00000371953.3:c.654C>A	p.Cys218Ter	p.C218*	ENST00000371953	NM_000314.4	218	tgC/tgA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49448453	49448453	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	42	292	0	ENST00000301067.7:c.258G>T	p.Glu86Asp	p.E86D	ENST00000301067	NM_003482.3	86	gaG/gaT					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992763	72992763	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	64	463	0	ENST00000268489.5:c.1282A>T	p.Thr428Ser	p.T428S	ENST00000268489	NM_006885.3	428	Acc/Tcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0006635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	26	485	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579352	7579352	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006635-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	265	481	0	ENST00000269305.4:c.335del	p.Gly112AlafsTer11	p.G112Afs*11	ENST00000269305	NM_001126112.2	112	gGc/gc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	101	312	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	96	519	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0006580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	44	187	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0006580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	44	187	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435423	110435423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	75	333	0	ENST00000375856.3:c.2978C>A	p.Ala993Asp	p.A993D	ENST00000375856	NM_003749.2	993	gCc/gAc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11188983	11188983	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	103	1037	1	ENST00000361445.4:c.5740G>T	p.Gly1914Cys	p.G1914C	ENST00000361445	NM_004958.3	1914	Ggt/Tgt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023832	27023832	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	93	622	3	ENST00000324856.7:c.938G>T	p.Gly313Val	p.G313V	ENST00000324856	NM_006015.4	313	gGg/gTg					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41748120	41748120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	23	231	1	ENST00000226382.2:c.649G>A	p.Gly217Arg	p.G217R	ENST00000226382	NM_003924.3	217	Ggg/Agg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46125058	46125058	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	54	712	0	ENST00000334344.6:c.245G>C	p.Cys82Ser	p.C82S	ENST00000334344	NM_152641.2	82	tGt/tCt					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57861936	57861936	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1363	107	1311	0	ENST00000228682.2:c.1237G>T	p.Glu413Ter	p.E413*	ENST00000228682	NM_005269.2	413	Gag/Tag					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99452055	99452055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	51	760	0	ENST00000268035.6:c.1389G>T	p.Glu463Asp	p.E463D	ENST00000268035	NM_000875.3	463	gaG/gaT					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68863593	68863593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	112	873	1	ENST00000261769.5:c.2332G>T	p.Ala778Ser	p.A778S	ENST00000261769	NM_004360.3	778	Gct/Tct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	92	649	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556886	29556886	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	56	510	1	ENST00000358273.4:c.2884G>T	p.Glu962Ter	p.E962*	ENST00000358273	NM_001042492.2	962	Gaa/Taa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47030598	47030598	+	intron_variant	Intron	SNP	G	G	T			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	106	783	0	ENST00000329236.7:c.201+1701G>T		p.*67*	ENST00000329236	NM_001204466.1							NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943642	66943642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1402	207	1258	0	ENST00000374690.3:c.2722C>A	p.Leu908Ile	p.L908I	ENST00000374690	NM_000044.3	908	Ctt/Att					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851071	63851071	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	45	388	0	ENST00000279873.7:c.1851delC	p.Ala618ProfsTer11	p.A618Pfs*11	ENST00000279873	NM_032199.2	617	Ccc/cc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	83	378	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	77	454	5	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178606	112178606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	97	585	1	ENST00000257430.4:c.7315C>T	p.Arg2439Cys	p.R2439C	ENST00000257430	NM_000038.5	2439	Cgc/Tgc					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190728481	190728481	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	16	303	0	ENST00000441310.2:c.1869G>C	p.Lys623Asn	p.K623N	ENST00000441310	NM_000534.4	623	aaG/aaC					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430708	181430708	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	10	366	1	ENST00000325404.1:c.560A>T	p.Asn187Ile	p.N187I	ENST00000325404	NM_003106.3	187	aAt/aTt					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67477157	67477157	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	85	638	0	ENST00000327367.4:c.964C>T	p.Gln322Ter	p.Q322*	ENST00000327367	NM_005902.3	322	Cag/Tag					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11136178	11136178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	43	568	0	ENST00000344626.4:c.3162C>G	p.His1054Gln	p.H1054Q	ENST00000344626	NM_003072.3	1054	caC/caG					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138200489	138201187	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGTGAAGTGGTTGACTTCCTAACACAGCGGCTGCTGTCCAGAAGGGGTTTTGTTCCTGACCTTTAAGAAAAAAAGCCCATGTAGGCAGTCAGGCAGAACTGTCAGGACCTACCGTGCTTTTCTACCAGCTTGTGCAGGGGACAGTCACGGTGGCCCTGCCAGCCGCCCATGGAGGCAAAAGGCACTGCGTGATTACAGCAGCTCCTAATATCACATTCCAAAAACCAGAGTGCCCTGTAGACAGAGCTCATGGGATGTGCTTTTACTAGACCATTCAGGTCTGGCATATCTAAGAGAGTCTAAGTTTAAACTAGACTTATTTTGCAACTTAGATATAACAGAACAATCTTAAAATCTGAAGAGTAGTAACTGGAGAGAAGGAAGTCTCTGTTGACACTGTAAGGAAACAGATGTGGTTTGGAAATCTCTCATTGGAAAGAAGGGTGATCAGGTAATGCCTGCTCCTTGCCTGTTCCTGTGAGCAATCAGTGCTTCAAGTTCAAAATGAGAGATTGGTAAAGCCAAAGATGTTTCCATAATAGGGATGTTATTTCTTTTGCTGAATTTATAGACTTAAACATATACATATATATATTTCTATACATTTAAGGCTGGCCTAATCTGTATTTGGAACCCATTTATTTCTCTACTGTCAGCATCTCTGTATCGGTGGGGTGACCCCTATGTGGTACTAAC	GTGAGTGAAGTGGTTGACTTCCTAACACAGCGGCTGCTGTCCAGAAGGGGTTTTGTTCCTGACCTTTAAGAAAAAAAGCCCATGTAGGCAGTCAGGCAGAACTGTCAGGACCTACCGTGCTTTTCTACCAGCTTGTGCAGGGGACAGTCACGGTGGCCCTGCCAGCCGCCCATGGAGGCAAAAGGCACTGCGTGATTACAGCAGCTCCTAATATCACATTCCAAAAACCAGAGTGCCCTGTAGACAGAGCTCATGGGATGTGCTTTTACTAGACCATTCAGGTCTGGCATATCTAAGAGAGTCTAAGTTTAAACTAGACTTATTTTGCAACTTAGATATAACAGAACAATCTTAAAATCTGAAGAGTAGTAACTGGAGAGAAGGAAGTCTCTGTTGACACTGTAAGGAAACAGATGTGGTTTGGAAATCTCTCATTGGAAAGAAGGGTGATCAGGTAATGCCTGCTCCTTGCCTGTTCCTGTGAGCAATCAGTGCTTCAAGTTCAAAATGAGAGATTGGTAAAGCCAAAGATGTTTCCATAATAGGGATGTTATTTCTTTTGCTGAATTTATAGACTTAAACATATACATATATATATTTCTATACATTTAAGGCTGGCCTAATCTGTATTTGGAACCCATTTATTTCTCTACTGTCAGCATCTCTGTATCGGTGGGGTGACCCCTATGTGGTACTAAC	-			P-0007909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	14	289	0	ENST00000237289.4:c.1906+1_1907-21del		p.X636_splice	ENST00000237289	NM_001270507.1	636						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	219	903	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56440713	56440713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	185	987	1	ENST00000407977.2:c.505G>A	p.Ala169Thr	p.A169T	ENST00000407977		169	Gct/Act					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	123	916	0	ENST00000371085.3:c.601C>A	p.Arg201Ser	p.R201S	ENST00000371085	NM_000516.4	201	Cgt/Agt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198265040	198265040	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	234	886	0	ENST00000335508.6:c.2837A>C	p.Lys946Thr	p.K946T	ENST00000335508	NM_012433.2	946	aAa/aCa					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56448355	56448366	+	inframe_deletion	In_Frame_Del	DEL	TGTCGTCATCAC	TGTCGTCATCAC	-			P-0008245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	180	809	1	ENST00000407977.2:c.281_292del	p.Ser94_Asp97del	p.S94_D97del	ENST00000407977		94	aGTGATGACGACAat/aat					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119759	70119778	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAGGGGCGCCCCTTGCCA	GAGAGGGGCGCCCCTTGCCA	-			P-0008245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	260	932	0	ENST00000245479.2:c.764_783del	p.Glu255GlyfsTer34	p.E255Gfs*34	ENST00000245479	NM_000346.3	254	cGAGAGGGGCGCCCCTTGCCA/c					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	278	309	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153244092	153244092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	358	425	0	ENST00000281708.4:c.2065C>T	p.Arg689Trp	p.R689W	ENST00000281708	NM_033632.3	689	Cgg/Tgg					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164611	36164611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	194	424	0	ENST00000300305.3:c.1264G>A	p.Glu422Lys	p.E422K	ENST00000300305		422	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	357	449	1	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g					NEWRECORD																																																																									
EPCAM	0	MSKCC	GRCh37	2	47600989	47600989	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	436	567	0	ENST00000263735.4:c.227C>G	p.Ser76Ter	p.S76*	ENST00000263735	NM_002354.2	76	tCa/tGa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55140775	55140775	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	161	473	0	ENST00000257290.5:c.1636G>A	p.Val546Ile	p.V546I	ENST00000257290	NM_006206.4	546	Gtt/Att					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157527547	157527547	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	456	554	3	ENST00000346085.5:c.5272G>A	p.Asp1758Asn	p.D1758N	ENST00000346085	NM_020732.3	1758	Gat/Aat					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29562710	29562710	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	379	503	1	ENST00000358273.4:c.3790G>A	p.Glu1264Lys	p.E1264K	ENST00000358273	NM_001042492.2	1264	Gaa/Aaa					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42796331	42796331	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006831-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	427	553	0	ENST00000575354.2:c.2980C>T	p.Gln994Ter	p.Q994*	ENST00000575354	NM_015125.3	994	Cag/Tag					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212589848	212589848	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	38	367	0	ENST00000342788.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000342788	NM_005235.2	232	Cga/Tga					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55971120	55971120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	78	447	1	ENST00000263923.4:c.1677G>T	p.Met559Ile	p.M559I	ENST00000263923	NM_002253.2	559	atG/atT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	43	388	0	ENST00000269305.4:c.503A>C	p.His168Pro	p.H168P	ENST00000269305	NM_001126112.2	168	cAc/cCc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175533	112175903	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAG	AAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAG	-			P-0007781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	94	435	0	ENST00000257430.4:c.4244_4614del	p.Ser1415IlefsTer5	p.S1415Ifs*5	ENST00000257430	NM_000038.5	1414	gtAAGTGGCATTATAAGCCCCAGTGATCTTCCAGATAGCCCTGGACAAACCATGCCACCAAGCAGAAGTAAAACACCTCCACCACCTCCTCAAACAGCTCAAACCAAGCGAGAAGTACCTAAAAATAAAGCACCTACTGCTGAAAAGAGAGAGAGTGGACCTAAGCAAGCTGCAGTAAATGCTGCAGTTCAGAGGGTCCAGGTTCTTCCAGATGCTGATACTTTATTACATTTTGCCACGGAAAGTACTCCAGATGGATTTTCTTGTTCATCCAGCCTGAGTGCTCTGAGCCTCGATGAGCCATTTATACAGAAAGATGTGGAATTAAGAATAATGCCTCCAGTTCAGGAAAATGACAATGGGAATGAAACAGaa/gtaa					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152415537	152415537	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	99	610	0	ENST00000206249.3:c.1387T>C	p.Ser463Pro	p.S463P	ENST00000206249	NM_000125.3	463	Tcc/Ccc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0004821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	464	303	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087452	27087452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	442	326	0	ENST00000324856.7:c.2026C>T	p.Pro676Ser	p.P676S	ENST00000324856	NM_006015.4	676	Cca/Tca					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47705494	47705494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	507	328	0	ENST00000233146.2:c.2294C>G	p.Ala765Gly	p.A765G	ENST00000233146	NM_000251.2	765	gCt/gGt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162867	47162867	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	506	273	0	ENST00000409792.3:c.3259T>G	p.Ser1087Ala	p.S1087A	ENST00000409792	NM_014159.6	1087	Tct/Gct					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138403554	138403554	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2030	522	360	0	ENST00000289153.2:c.2228A>G	p.His743Arg	p.H743R	ENST00000289153	NM_006219.2	743	cAt/cGt					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339364	116339364	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	71	287	0	ENST00000397752.3:c.226G>T	p.Glu76Ter	p.E76*	ENST00000397752	NM_000245.2	76	Gaa/Taa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692994	89692994	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	319	192	0	ENST00000371953.3:c.478A>G	p.Thr160Ala	p.T160A	ENST00000371953	NM_000314.4	160	Acc/Gcc					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89348880	89348880	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	578	383	2	ENST00000301030.4:c.4070C>A	p.Ser1357Tyr	p.S1357Y	ENST00000301030	NM_001256183.1	1357	tCc/tAc					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36938271	36938271	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	83	373	0	ENST00000361632.4:c.690del	p.Met231CysfsTer32	p.M231Cfs*32	ENST00000361632		230	ccC/cc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42019450	42019466	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCAGAACCAGTTTAT	ATCCAGAACCAGTTTAT	-			P-0004821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	499	409	0	ENST00000219905.7:c.3507_3523del	p.Glu1170HisfsTer6	p.E1170Hfs*6	ENST00000219905	NM_001164273.1	1168	gATCCAGAACCAGTTTAT/g					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3817819	3817819	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1249	601	377	0	ENST00000262367.5:c.3152del	p.Lys1051ArgfsTer5	p.K1051Rfs*5	ENST00000262367	NM_004380.2	1051	aAg/ag					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180057744	180057744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138831198		P-0005711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	118	422	0	ENST00000261937.6:c.211G>A	p.Gly71Arg	p.G71R	ENST00000261937	NM_182925.4	71	Gga/Aga					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66937465	66937465	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0005711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	175	184	0	ENST00000374690.3:c.2318+1G>C		p.X773_splice	ENST00000374690	NM_000044.3	773						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577591	7577596	+	inframe_deletion	In_Frame_Del	DEL	GGTACA	GGTACA	-			P-0005711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	172	455	0	ENST00000269305.4:c.685_690del	p.Cys229_Thr230del	p.C229_T230del	ENST00000269305	NM_001126112.2	229	TGTACC/-					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0005605-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	615	577	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0005605-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	264	390	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	183	412	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	603	439	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508083	106508083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	169	223	0	ENST00000359195.3:c.77G>A	p.Arg26His	p.R26H	ENST00000359195	NM_002649.2	26	cGc/cAc					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162745453	162745453	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	353	356	1	ENST00000367921.3:c.1868T>C	p.Leu623Pro	p.L623P	ENST00000367921	NM_006182.2	623	cTt/cCt					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148511177	148511177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	649	330	0	ENST00000320356.2:c.1725G>T	p.Gln575His	p.Q575H	ENST00000320356	NM_004456.4	575	caG/caT					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108164100	108164100	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	50	233	0	ENST00000278616.4:c.4672A>G	p.Thr1558Ala	p.T1558A	ENST00000278616	NM_000051.3	1558	Acg/Gcg					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95569894	95569894	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	82	398	0	ENST00000343455.3:c.3839G>T	p.Ser1280Ile	p.S1280I	ENST00000343455	NM_177438.2	1280	aGc/aTc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41566430	41566430	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	88	353	0	ENST00000263253.7:c.4307G>C	p.Trp1436Ser	p.W1436S	ENST00000263253	NM_001429.3	1436	tGg/tCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578226	7578229	+	frameshift_variant	Frame_Shift_Del	DEL	TCAT	TCAT	-			P-0004902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	115	385	0	ENST00000269305.4:c.620_623del	p.Asp207AlafsTer39	p.D207Afs*39	ENST00000269305	NM_001126112.2	207	gATGAc/gc					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	186	355	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267749	198267751	+	inframe_deletion	In_Frame_Del	DEL	ACC	ACC	-			P-0009944-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	246	408	0	ENST00000335508.6:c.1728_1730del	p.Val577del	p.V577del	ENST00000335508	NM_012433.2	576	gtGGTc/gtc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	169	329	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	286	359	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	201	370	1	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55603364	55603364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	100	428	1	ENST00000288135.5:c.2720G>T	p.Trp907Leu	p.W907L	ENST00000288135	NM_000222.2	907	tGg/tTg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66286196	66286196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	33	579	1	ENST00000273854.3:c.1490G>A	p.Gly497Glu	p.G497E	ENST00000273854	NM_004439.5	497	gGa/gAa					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180049827	180049827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	45	387	0	ENST00000261937.6:c.1561C>A	p.Leu521Met	p.L521M	ENST00000261937	NM_182925.4	521	Ctg/Atg					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	401642	401642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	185	278	0	ENST00000380956.4:c.964G>A	p.Asp322Asn	p.D322N	ENST00000380956	NM_001195286.1	322	Gac/Aac					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41730075	41730075	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1423	717	973	0	ENST00000242208.4:c.454C>T	p.Arg152Cys	p.R152C	ENST00000242208	NM_002192.2	152	Cgt/Tgt					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70451272	70451272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	161	481	1	ENST00000373644.4:c.6112C>T	p.Arg2038Cys	p.R2038C	ENST00000373644	NM_030625.2	2038	Cgt/Tgt					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111885577	111885577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	352	883	1	ENST00000341259.2:c.1354G>A	p.Ala452Thr	p.A452T	ENST00000341259	NM_005475.2	452	Gcc/Acc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3820836	3820836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	246	383	0	ENST00000262367.5:c.2615C>T	p.Thr872Met	p.T872M	ENST00000262367	NM_004380.2	872	aCg/aTg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47030608	47030608	+	intron_variant	Intron	SNP	G	G	C			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	115	495	0	ENST00000329236.7:c.201+1711G>C		p.*67*	ENST00000329236	NM_001204466.1							NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120413	70120413	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	604	726	0	ENST00000245479.2:c.1415del	p.Ala472ValfsTer51	p.A472Vfs*51	ENST00000245479	NM_000346.3	472	gCt/gt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	47	261	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	94	397	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg					NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227663346	227663346	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1024227751		P-0008394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	28	188	0	ENST00000305123.5:c.109G>A	p.Glu37Lys	p.E37K	ENST00000305123	NM_005544.2	37	Gag/Aag					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88690565	88690565	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0008394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	50	395	0	ENST00000360948.2:c.464+1del		p.X155_splice	ENST00000360948	NM_001012338.2	155						NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123258034	123258034	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	231	799	0	ENST00000358487.5:c.1647T>A	p.Asn549Lys	p.N549K	ENST00000358487	NM_000141.4	549	aaT/aaA					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	143	370	1	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577529	7577529	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	69	315	0	ENST00000269305.4:c.752T>A	p.Ile251Asn	p.I251N	ENST00000269305	NM_001126112.2	251	aTc/aAc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	47	370	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139814938	139814938	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	30	696	0	ENST00000247668.2:c.931C>T	p.Gln311Ter	p.Q311*	ENST00000247668	NM_021138.3	311	Caa/Taa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108205765	108205765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	28	379	0	ENST00000278616.4:c.8080G>A	p.Gly2694Arg	p.G2694R	ENST00000278616	NM_000051.3	2694	Gga/Aga					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28919665	28919665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	27	491	0	ENST00000282397.4:c.2272G>A	p.Glu758Lys	p.E758K	ENST00000282397	NM_002019.4	758	Gag/Aag					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99500376	99500376	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	28	546	0	ENST00000268035.6:c.3809T>G	p.Met1270Arg	p.M1270R	ENST00000268035	NM_000875.3	1270	aTg/aGg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125857	47125857	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	35	118	0	ENST00000409792.3:c.5413G>T	p.Glu1805Ter	p.E1805*	ENST00000409792	NM_014159.6	1805	Gaa/Taa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139401386	139401386	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	70	300	0	ENST00000277541.6:c.3683C>T	p.Pro1228Leu	p.P1228L	ENST00000277541	NM_017617.3	1228	cCc/cTc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440819	52440888	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAACAGGGCAGGCACAGGGCCCTTACCCTGCAGTGGCGAGGCCGATACGCTCCATGATGACCCGCCGGGC	GAACAGGGCAGGCACAGGGCCCTTACCCTGCAGTGGCGAGGCCGATACGCTCCATGATGACCCGCCGGGC	-			P-0006598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	63	389	0	ENST00000460680.1:c.616_659+26del		p.X206_splice	ENST00000460680	NM_004656.3	206						NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	91	402	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15350470	15350470	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	58	209	0	ENST00000263377.2:c.3445C>T	p.Arg1149Trp	p.R1149W	ENST00000263377	NM_058243.2	1149	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	332	466	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162735826	162735826	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	132	491	0	ENST00000367921.3:c.1135A>T	p.Thr379Ser	p.T379S	ENST00000367921	NM_006182.2	379	Acc/Tcc					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91341566	91341566	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	168	340	2	ENST00000355112.3:c.3357G>T	p.Leu1119Phe	p.L1119F	ENST00000355112	NM_000057.2	1119	ttG/ttT					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9934946	9934946	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	70	298	0	ENST00000330684.3:c.1344G>T	p.Glu448Asp	p.E448D	ENST00000330684	NM_001134407.1	448	gaG/gaT					NEWRECORD																																																																									
HOXB13	0	MSKCC	GRCh37	17	46805642	46805642	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	181	605	0	ENST00000290295.7:c.314C>A	p.Thr105Asn	p.T105N	ENST00000290295	NM_006361.5	105	aCc/aAc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1219384	1219384	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	133	385	0	ENST00000326873.7:c.436A>T	p.Lys146Ter	p.K146*	ENST00000326873	NM_000455.4	146	Aag/Tag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717661	89717684	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	CAGGACCCACACGACGGGAAGACA	CAGGACCCACACGACGGGAAGACA	-			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	46	313	0	ENST00000371953.3:c.686_709del	p.Ser229_Lys237delinsTer	p.S229_K237delins*	ENST00000371953	NM_000314.4	229	tCAGGACCCACACGACGGGAAGACAag/tag					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39613900	39613901	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	TT			P-0008957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	90	457	0	ENST00000262039.4:c.1818_1819delinsTT	p.Glu607Ter	p.E607*	ENST00000262039	NM_002647.2	606	ccGGaa/ccTTaa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720825	89720825	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004731-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			162	80	302	0	ENST00000371953.3:c.976G>C	p.Asp326His	p.D326H	ENST00000371953	NM_000314.4	326	Gac/Cac					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4385324	4385324	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004731-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			253	93	545	0	ENST00000261254.3:c.349C>T	p.Pro117Ser	p.P117S	ENST00000261254	NM_001759.3	117	Ccg/Tcg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48923160	48923160	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0004731-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			285	105	332	0	ENST00000267163.4:c.607+1G>A		p.X203_splice	ENST00000267163	NM_000321.2	203						NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41574193	41574193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004731-T01-IM5									Unknown	UNKNOWN				MSK-IMPACT			180	58	677	2	ENST00000263253.7:c.6478G>A	p.Gly2160Arg	p.G2160R	ENST00000263253	NM_001429.3	2160	Ggg/Agg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	217	407	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154998	112154998	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	386	501	2	ENST00000257430.4:c.1269G>A	p.Trp423Ter	p.W423*	ENST00000257430	NM_000038.5	423	tgG/tgA					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55604673	55604673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	298	398	0	ENST00000288135.5:c.2881G>A	p.Gly961Ser	p.G961S	ENST00000288135	NM_000222.2	961	Ggc/Agc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32184800	32184800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	81	413	0	ENST00000375023.3:c.1783A>G	p.Ser595Gly	p.S595G	ENST00000375023	NM_004557.3	595	Agt/Ggt					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43615186	43615186	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	20	279	0	ENST00000355710.3:c.2600A>C	p.Glu867Ala	p.E867A	ENST00000355710	NM_020975.4	867	gAg/gCg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433511	49433511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	229	680	1	ENST00000301067.7:c.8042G>A	p.Arg2681Gln	p.R2681Q	ENST00000301067	NM_003482.3	2681	cGg/cAg					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562963	21562963	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	53	427	0	ENST00000382592.4:c.956A>G	p.Lys319Arg	p.K319R	ENST00000382592	NM_014572.2	319	aAg/aGg					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47424743	47424743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	157	685	0	ENST00000377045.4:c.551G>A	p.Gly184Asp	p.G184D	ENST00000377045	NM_001654.4	184	gGt/gAt					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57751183	57751183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	33	395	0	ENST00000274289.3:c.1684C>T	p.Pro562Ser	p.P562S	ENST00000274289	NM_006622.3	562	Cct/Tct					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175925	112175925	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0005630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	59	351	0	ENST00000257430.4:c.4634C>G	p.Ser1545Ter	p.S1545*	ENST00000257430	NM_000038.5	1545	tCa/tGa					NEWRECORD																																																																									
HOXB13	0	MSKCC	GRCh37	17	46805714	46805714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	100	656	0	ENST00000290295.7:c.242G>A	p.Gly81Asp	p.G81D	ENST00000290295	NM_006361.5	81	gGt/gAt					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24176342	24176342	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	36	455	0	ENST00000263121.7:c.1133T>C	p.Leu378Pro	p.L378P	ENST00000263121	NM_003073.3	378	cTt/cCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009480-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	96	328	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	27	344	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006776-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	27	344	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	26	341	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577084	7577084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	122	392	0	ENST00000269305.4:c.854A>T	p.Glu285Val	p.E285V	ENST00000269305	NM_001126112.2	285	gAg/gTg					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110250386	110250386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	28	421	0	ENST00000374672.4:c.289G>A	p.Glu97Lys	p.E97K	ENST00000374672	NM_004235.4	97	Gag/Aag					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435246	110435246	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	59	122	0	ENST00000375856.3:c.3155C>T	p.Thr1052Ile	p.T1052I	ENST00000375856	NM_003749.2	1052	aCc/aTc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16258508	16258508	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	42	242	0	ENST00000375759.3:c.5773G>C	p.Glu1925Gln	p.E1925Q	ENST00000375759	NM_015001.2	1925	Gag/Cag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164240	47164240	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	137	273	0	ENST00000409792.3:c.1886A>T	p.Lys629Met	p.K629M	ENST00000409792	NM_014159.6	629	aAg/aTg					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89498522	89498522	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	19	277	0	ENST00000336596.2:c.2494G>C	p.Asp832His	p.D832H	ENST00000336596	NM_005233.5	832	Gat/Cat					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106156130	106156130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	83	318	0	ENST00000380013.4:c.1031C>A	p.Thr344Lys	p.T344K	ENST00000380013	NM_001127208.2	344	aCa/aAa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157600	106157600	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	65	390	0	ENST00000380013.4:c.2501G>C	p.Cys834Ser	p.C834S	ENST00000380013	NM_001127208.2	834	tGt/tCt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187535351	187535351	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	74	347	0	ENST00000441802.2:c.9223G>T	p.Asp3075Tyr	p.D3075Y	ENST00000441802	NM_005245.3	3075	Gac/Tac					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	110	261	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8471044	8471044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	83	364	0	ENST00000356435.5:c.3455G>T	p.Gly1152Val	p.G1152V	ENST00000356435		1152	gGg/gTg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431831	49431831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	19	209	0	ENST00000301067.7:c.9308C>G	p.Ala3103Gly	p.A3103G	ENST00000301067	NM_003482.3	3103	gCt/gGt					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115110087	115110087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	17	153	0	ENST00000257566.3:c.1791C>A	p.Phe597Leu	p.F597L	ENST00000257566	NM_016569.3	597	ttC/ttA					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110437494	110437494	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	30	290	0	ENST00000375856.3:c.907C>T	p.Arg303Cys	p.R303C	ENST00000375856	NM_003749.2	303	Cgc/Tgc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29548914	29548914	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	19	205	0	ENST00000358273.4:c.1688C>T	p.Pro563Leu	p.P563L	ENST00000358273	NM_001042492.2	563	cCt/cTt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29661899	29661899	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	114	361	0	ENST00000358273.4:c.5856G>C	p.Trp1952Cys	p.W1952C	ENST00000358273	NM_001042492.2	1952	tgG/tgC					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868185	37868185	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	141	315	0	ENST00000269571.5:c.906C>G	p.Asn302Lys	p.N302K	ENST00000269571		302	aaC/aaG					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59760959	59760959	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	130	409	0	ENST00000259008.2:c.3448G>T	p.Ala1150Ser	p.A1150S	ENST00000259008	NM_032043.2	1150	Gct/Tct					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52719044	52719044	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	253	312	2	ENST00000322088.6:c.820G>T	p.Val274Leu	p.V274L	ENST00000322088	NM_014225.5	274	Gtg/Ttg					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39795341	39795341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	100	300	0	ENST00000288319.7:c.379G>C	p.Val127Leu	p.V127L	ENST00000288319	NM_182918.3	127	Gtg/Ctg					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45394760	45394761	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0009293-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	67	369	0	ENST00000262160.6:c.588_589del	p.Thr197SerfsTer8	p.T197Sfs*8	ENST00000262160	NM_005901.5	196	taTAct/tact					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21970972	21970972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005992-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	46	419	0	ENST00000304494.5:c.386A>G	p.Tyr129Cys	p.Y129C	ENST00000304494	NM_000077.4	129	tAc/tGc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970972	21970972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005992-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	46	419	0	ENST00000304494.5:c.386A>G	p.Tyr129Cys	p.Y129C	ENST00000304494	NM_000077.4	129	tAc/tGc					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	133	523	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999006	100999006	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	86	589	0	ENST00000325455.5:c.796G>A	p.Ala266Thr	p.A266T	ENST00000325455	NM_001202474.3	266	Gcc/Acc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49445499	49445499	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	114	490	1	ENST00000301067.7:c.1967delT	p.Leu656ArgfsTer274	p.L656Rfs*274	ENST00000301067	NM_003482.3	656	cTg/cg					NEWRECORD																																																																									
IL10	0	MSKCC	GRCh37	1	206941988	206941988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	152	289	0	ENST00000423557.1:c.530G>A	p.Arg177Gln	p.R177Q	ENST00000423557	NM_000572.2	177	cGa/cAa					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266570	41266570	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	302	353	0	ENST00000349496.5:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000349496	NM_001904.3	123	Cag/Tag					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89448592	89448592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	163	529	0	ENST00000336596.2:c.1556C>T	p.Thr519Met	p.T519M	ENST00000336596	NM_005233.5	519	aCg/aTg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173965	112173965	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	221	262	1	ENST00000257430.4:c.2674G>T	p.Glu892Ter	p.E892*	ENST00000257430	NM_000038.5	892	Gaa/Taa					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117866540	117866540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3440	436	984	0	ENST00000297338.2:c.1105G>A	p.Val369Ile	p.V369I	ENST00000297338	NM_006265.2	369	Gta/Ata					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	748	352	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32968926	32968926	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	425	546	0	ENST00000380152.3:c.9357A>C	p.Leu3119Phe	p.L3119F	ENST00000380152		3119	ttA/ttC					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	533	504	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	291	421	2	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0008735-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	1013	648	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a					NEWRECORD																																																																									
SHQ1	0	MSKCC	GRCh37	3	72873620	72873620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	140	569	0	ENST00000325599.8:c.682G>A	p.Ala228Thr	p.A228T	ENST00000325599	NM_018130.2	228	Gcc/Acc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0006065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	145	316	0	ENST00000397752.3:c.3028G>C	p.Asp1010His	p.D1010H	ENST00000397752	NM_000245.2	1010	Gat/Cat					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57755587	57755587	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006065-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	113	492	0	ENST00000274289.3:c.200C>G	p.Pro67Arg	p.P67R	ENST00000274289	NM_006622.3	67	cCg/cGg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1962	138	421	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0006171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	983	355	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	64	365	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579315	7579316	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0008040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	41	305	0	ENST00000269305.4:c.371_372del	p.Cys124TyrfsTer24	p.C124Yfs*24	ENST00000269305	NM_001126112.2	124	tGC/t					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56376691	56376691	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	220	441	1	ENST00000348428.3:c.731T>A	p.Leu244Ter	p.L244*	ENST00000348428	NM_006785.3	244	tTg/tAg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139399491	139399514	+	inframe_deletion	In_Frame_Del	DEL	CTGTTGCAGCCCTGGTCGCAGTGC	CTGTTGCAGCCCTGGTCGCAGTGC	-			P-0005115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	390	260	0	ENST00000277541.6:c.4629_4652del	p.His1544_Ser1551del	p.H1544_S1551del	ENST00000277541	NM_017617.3	1543	ggGCACTGCGACCAGGGCTGCAACAGc/ggc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	23	442	2	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114901060	114901060	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs190966900		P-0005221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	15	617	1	ENST00000543371.1:c.670G>A	p.Val224Ile	p.V224I	ENST00000543371	NM_001198531.1	224	Gta/Ata					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118377211	118377211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	26	524	0	ENST00000534358.1:c.10604G>A	p.Gly3535Asp	p.G3535D	ENST00000534358	NM_005933.3	3535	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0007001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	355	722	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	297	551	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88472523	88472523	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	96	634	0	ENST00000360948.2:c.2032C>T	p.Arg678Ter	p.R678*	ENST00000360948	NM_001012338.2	678	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0007428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	249	263	1	ENST00000269305.4:c.376-2A>T		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1570	506	584	0	ENST00000397062.3:c.241G>C	p.Gly81Arg	p.G81R	ENST00000397062	NM_006164.4	81	Ggt/Cgt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188309	10188309	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	236	403	0	ENST00000256474.2:c.452T>A	p.Ile151Asn	p.I151N	ENST00000256474	NM_000551.3	151	aTc/aAc					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89347144	89347144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1410	311	598	0	ENST00000301030.4:c.5806G>A	p.Glu1936Lys	p.E1936K	ENST00000301030	NM_001256183.1	1936	Gag/Aag					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52610705	52610705	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007428-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	127	379	0	ENST00000394830.3:c.3468del	p.Val1157TyrfsTer36	p.V1157Yfs*36	ENST00000394830	NM_018313.4	1156	aaA/aa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55573321	55573321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	117	544	0	ENST00000288135.5:c.983G>A	p.Gly328Glu	p.G328E	ENST00000288135	NM_000222.2	328	gGa/gAa					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176721532	176721532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	92	297	1	ENST00000439151.2:c.7163C>T	p.Pro2388Leu	p.P2388L	ENST00000439151	NM_022455.4	2388	cCg/cTg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29653141	29653150	+	frameshift_variant	Frame_Shift_Del	DEL	GAAACTGGCT	GAAACTGGCT	-			P-0004945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	164	350	0	ENST00000358273.4:c.5141_5150del	p.Lys1714SerfsTer3	p.K1714Sfs*3	ENST00000358273	NM_001042492.2	1713	ggGAAACTGGCT/gg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576899	7576912	+	frameshift_variant	Frame_Shift_Del	DEL	GGAGAGGAGCTGGT	GGAGAGGAGCTGGT	-			P-0004945-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	209	395	0	ENST00000269305.4:c.934_947del	p.Thr312ProfsTer20	p.T312Pfs*20	ENST00000269305	NM_001126112.2	312	ACCAGCTCCTCTCCc/c					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577061	7577064	+	frameshift_variant	Frame_Shift_Del	DEL	CTTT	CTTT	-			P-0006030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	63	447	0	ENST00000269305.4:c.874_877delAAAG	p.Lys292GlyfsTer52	p.K292Gfs*52	ENST00000269305	NM_001126112.2	292	AAAGgg/gg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183773	10183773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	35	369	1	ENST00000256474.2:c.242C>A	p.Pro81Gln	p.P81Q	ENST00000256474	NM_000551.3	81	cCg/cAg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117730760	117730760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	94	623	0	ENST00000368508.3:c.274G>A	p.Glu92Lys	p.E92K	ENST00000368508	NM_002944.2	92	Gaa/Aaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	196	404	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76949316	76949316	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1210	288	617	0	ENST00000373344.5:c.481G>T	p.Gly161Ter	p.G161*	ENST00000373344	NM_000489.3	161	Gga/Tga					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207065	1207065	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	182	382	0	ENST00000326873.7:c.157delG	p.Asp53ThrfsTer11	p.D53Tfs*11	ENST00000326873	NM_000455.4	51	atG/at					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55984794	55984794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	294	478	0	ENST00000263923.4:c.335C>T	p.Ser112Leu	p.S112L	ENST00000263923	NM_002253.2	112	tCg/tTg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602584	10602584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	200	310	1	ENST00000171111.5:c.994G>T	p.Gly332Cys	p.G332C	ENST00000171111	NM_203500.1	332	Ggc/Tgc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55971151	55971151	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	131	191	0	ENST00000263923.4:c.1646G>A	p.Arg549Lys	p.R549K	ENST00000263923	NM_002253.2	549	aGg/aAg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66231715	66231715	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	214	459	0	ENST00000273854.3:c.1985C>A	p.Ala662Asp	p.A662D	ENST00000273854	NM_004439.5	662	gCt/gAt					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1293920	1293920	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	391	346	1	ENST00000310581.5:c.1081G>T	p.Val361Leu	p.V361L	ENST00000310581	NM_198253.2	361	Gtg/Ttg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2976808	2976808	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	232	537	0	ENST00000396946.4:c.1204A>T	p.Lys402Ter	p.K402*	ENST00000396946	NM_032415.4	402	Aag/Tag					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81334737	81334737	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	236	483	0	ENST00000222390.5:c.1979G>T	p.Gly660Val	p.G660V	ENST00000222390	NM_000601.4	660	gGg/gTg					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5123080	5123080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	212	471	0	ENST00000381652.3:c.3136G>A	p.Glu1046Lys	p.E1046K	ENST00000381652	NM_004972.3	1046	Gaa/Aaa					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333123	70333123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	272	470	1	ENST00000373644.4:c.1028C>A	p.Pro343Gln	p.P343Q	ENST00000373644	NM_030625.2	343	cCa/cAa					NEWRECORD																																																																									
SDHAF2	0	MSKCC	GRCh37	11	61205552	61205552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	263	481	0	ENST00000301761.2:c.337A>T	p.Ser113Cys	p.S113C	ENST00000301761	NM_017841.2	113	Agt/Tgt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435967	49435967	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			996	256	438	0	ENST00000301067.7:c.6014G>A	p.Arg2005His	p.R2005H	ENST00000301067	NM_003482.3	2005	cGc/cAc					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30264353	30264353	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	86	138	3	ENST00000322652.5:c.88G>T	p.Ala30Ser	p.A30S	ENST00000322652	NM_015355.2	30	Gcg/Tcg					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48650619	48650619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1088	290	480	1	ENST00000376670.3:c.589C>A	p.Pro197Thr	p.P197T	ENST00000376670	NM_002049.3	197	Cct/Act					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11101952	11101965	+	frameshift_variant	Frame_Shift_Del	DEL	AAGCAGCAGAAGAT	AAGCAGCAGAAGAT	-			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	131	333	0	ENST00000344626.4:c.1372_1385delAAGCAGCAGAAGAT	p.Lys458ArgfsTer16	p.K458Rfs*16	ENST00000344626	NM_003072.3	458	AAGCAGCAGAAGATc/c					NEWRECORD																																																																									
RAD51B	0	MSKCC	GRCh37	14	68331843	68331844	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0008876-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	188	383	0	ENST00000487270.1:c.440_441delTT	p.Phe147Ter	p.F147*	ENST00000487270	NM_133509.3	147	TTt/t					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0004839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	239	533	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584593	48584593	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	268	535	0	ENST00000342988.3:c.766C>T	p.Gln256Ter	p.Q256*	ENST00000342988	NM_005359.5	256	Cag/Tag					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29913010	29913010	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C	rs112569059		P-0004839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	235	490	0	ENST00000376809.5:c.1046-1G>C		p.X349_splice	ENST00000376809	NM_002116.7	349						NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32905124	32905127	+	frameshift_variant	Frame_Shift_Del	DEL	GACA	GACA	-	rs1455701926		P-0004839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	235	554	0	ENST00000380152.3:c.755_758del	p.Asp252ValfsTer24	p.D252Vfs*24	ENST00000380152		250	gtGACA/gt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52668637	52668653	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCATTTTAATTTGC	TGGGCATTTTAATTTGC	-			P-0004839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	298	652	0	ENST00000394830.3:c.1266_1282del	p.Gln422HisfsTer16	p.Q422Hfs*16	ENST00000394830	NM_018313.4	422	caGCAAATTAAAATGCCCAta/cata					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	149	334	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	89	232	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174868	112174868	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	211	449	0	ENST00000257430.4:c.3577C>T	p.Gln1193Ter	p.Q1193*	ENST00000257430	NM_000038.5	1193	Cag/Tag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	126	262	1	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	374	593	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108186769	108186769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	171	421	2	ENST00000278616.4:c.6127G>A	p.Gly2043Ser	p.G2043S	ENST00000278616	NM_000051.3	2043	Ggc/Agc					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111885901	111885901	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs79819500		P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	374	624	0	ENST00000341259.2:c.1523G>A	p.Arg508Gln	p.R508Q	ENST00000341259	NM_005475.2	508	cGg/cAg					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81609825	81609825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	184	315	0	ENST00000298171.2:c.1423C>T	p.Leu475Phe	p.L475F	ENST00000298171	NM_000369.2	475	Ctc/Ttc					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870948	12870948	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	229	413	0	ENST00000228872.4:c.176del	p.Lys59SerfsTer12	p.K59Sfs*12	ENST00000228872	NM_004064.3	59	Aag/ag					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123176470	123176470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	127	427	0	ENST00000218089.9:c.437G>A	p.Arg146Gln	p.R146Q	ENST00000218089	NM_001042749.1	146	cGa/cAa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	135	578	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0008075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	62	400	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175476	112175476	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	49	326	0	ENST00000257430.4:c.4188del	p.Phe1396LeufsTer19	p.F1396Lfs*19	ENST00000257430	NM_000038.5	1395	agT/ag					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117848	70117848	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0008075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	215	332	0	ENST00000245479.2:c.316A>T	p.Lys106Ter	p.K106*	ENST00000245479	NM_000346.3	106	Aag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579505	7579505	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008075-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	69	348	0	ENST00000269305.4:c.182del	p.Asp61ValfsTer62	p.D61Vfs*62	ENST00000269305	NM_001126112.2	61	gAt/gt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	353	411	3	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8376021	8376021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	435	591	3	ENST00000356435.5:c.4576G>T	p.Glu1526Ter	p.E1526*	ENST00000356435		1526	Gaa/Taa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49027248	49027248	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	212	306	1	ENST00000267163.4:c.1814+1G>A		p.X605_splice	ENST00000267163	NM_000321.2	605						NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88576118	88576118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	495	562	2	ENST00000360948.2:c.1555C>A	p.Gln519Lys	p.Q519K	ENST00000360948	NM_001012338.2	519	Cag/Aag					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16068426	16068426	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	35	297	1	ENST00000268712.3:c.485G>T	p.Gly162Val	p.G162V	ENST00000268712	NM_006311.3	162	gGg/gTg					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33792721	33792721	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	174	136	0	ENST00000498907.2:c.600C>G	p.His200Gln	p.H200Q	ENST00000498907	NM_004364.3	200	caC/caG					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3786767	3786767	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	48	456	4	ENST00000262367.5:c.4444T>G	p.Tyr1482Asp	p.Y1482D	ENST00000262367	NM_004380.2	1482	Tac/Gac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	447	335	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916890	178916890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	424	551	1	ENST00000263967.3:c.277C>T	p.Arg93Trp	p.R93W	ENST00000263967	NM_006218.2	93	Cgg/Tgg					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	498248	498248	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	85	126	0	ENST00000399788.2:c.10G>A	p.Val4Met	p.V4M	ENST00000399788	NM_001042603.1	4	Gtg/Atg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41265908	41266236	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACA	TTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACA	-			P-0006359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	36	47	0	ENST00000349496.5:c.14-109_233del		p.X5_splice	ENST00000349496	NM_001904.3	5						NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70118931	70118948	+	inframe_deletion	In_Frame_Del	DEL	ACCACCCGGATTACAAGT	ACCACCCGGATTACAAGT	-			P-0006359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	390	447	0	ENST00000245479.2:c.507_524del	p.His169_Tyr174del	p.H169_Y174del	ENST00000245479	NM_000346.3	168	gACCACCCGGATTACAAGTac/gac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	150	236	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0006457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	66	265	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0006457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	148	347	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55946181	55946181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	156	352	0	ENST00000263923.4:c.3998G>C	p.Gly1333Ala	p.G1333A	ENST00000263923	NM_002253.2	1333	gGa/gCa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955522	48955522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	108	337	1	ENST00000267163.4:c.1638G>A	p.Met546Ile	p.M546I	ENST00000267163	NM_000321.2	546	atG/atA					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162724945	162724946	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	TT			P-0006457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	89	305	0	ENST00000367921.3:c.418-1_418delinsTT		p.X140_splice	ENST00000367921	NM_006182.2	140						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	35	166	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0005183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	130	454	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20148727	20148727	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0005183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	80	501	0	ENST00000379607.5:c.338-2A>T		p.X113_splice	ENST00000379607	NM_001412.3	113						NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72831172	72831221	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGATGTAGAAAGGGAAGAGGAGGTGCTGCTGCTGCTGTAGTTGCAGCA	GGGGATGTAGAAAGGGAAGAGGAGGTGCTGCTGCTGCTGTAGTTGCAGCA	-			P-0005183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	122	697	0	ENST00000268489.5:c.5360_5409del	p.Leu1787GlnfsTer3	p.L1787Qfs*3	ENST00000268489	NM_006885.3	1787	cTGCTGCAACTACAGCAGCAGCAGCACCTCCTCTTCCCTTTCTACATCCCC/c					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117866546	117866551	+	inframe_deletion	In_Frame_Del	DEL	CTGTCT	CTGTCT	-			P-0005183-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	178	965	0	ENST00000297338.2:c.1094_1099del	p.Glu365_Thr366del	p.E365_T366del	ENST00000297338	NM_006265.2	365	gAGACAGga/gga					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0008859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	27	459	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	44	432	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	121	436	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	32	559	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0008778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	195	254	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2226271	2226271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	71	384	0	ENST00000326181.6:c.1884G>T	p.Trp628Cys	p.W628C	ENST00000326181	NM_032271.2	628	tgG/tgT					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0008407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	57	620	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593667	55593669	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0006295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	113	182	0	ENST00000288135.5:c.1735_1737del	p.Asp579del	p.D579del	ENST00000288135	NM_000222.2	578	tATGat/tat					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828077	72828077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	393	345	0	ENST00000268489.5:c.8504G>C	p.Cys2835Ser	p.C2835S	ENST00000268489	NM_006885.3	2835	tGt/tCt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11189844	11189844	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	167	373	0	ENST00000361445.4:c.5665T>G	p.Phe1889Val	p.F1889V	ENST00000361445	NM_004958.3	1889	Ttc/Gtc					NEWRECORD																																																																									
HIST3H3	0	MSKCC	GRCh37	1	228612897	228612897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	172	646	1	ENST00000366696.1:c.130C>T	p.Pro44Ser	p.P44S	ENST00000366696	NM_003493.2	44	Ccc/Tcc					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61712993	61712993	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	109	521	1	ENST00000401558.2:c.2418A>G	p.Ile806Met	p.I806M	ENST00000401558	NM_003400.3	806	atA/atG					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152007064	152007064	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	100	477	0	ENST00000262189.6:c.836C>G	p.Ser279Ter	p.S279*	ENST00000262189	NM_170606.2	279	tCa/tGa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8521315	8521315	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	56	296	0	ENST00000356435.5:c.923T>C	p.Leu308Pro	p.L308P	ENST00000356435		308	cTg/cCg					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43609055	43609055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	87	580	1	ENST00000355710.3:c.1811C>A	p.Ala604Asp	p.A604D	ENST00000355710	NM_020975.4	604	gCt/gAt					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99452063	99452063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	162	448	0	ENST00000268035.6:c.1397C>T	p.Thr466Met	p.T466M	ENST00000268035	NM_000875.3	466	aCg/aTg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243370	46243370	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	95	446	0	ENST00000334344.6:c.1725del	p.Pro576GlnfsTer5	p.P576Qfs*5	ENST00000334344	NM_152641.2	575	Ttt/tt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578414	7578414	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	127	292	0	ENST00000269305.4:c.516delT	p.Val173Ter	p.V173*	ENST00000269305	NM_001126112.2	172	gtT/gt					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120506296	120506296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	110	373	0	ENST00000256646.2:c.1816G>T	p.Asp606Tyr	p.D606Y	ENST00000256646	NM_024408.3	606	Gac/Tac					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243553	46243553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	131	314	0	ENST00000334344.6:c.1906C>G	p.Pro636Ala	p.P636A	ENST00000334344	NM_152641.2	636	Cct/Gct					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039174	49039174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	195	460	0	ENST00000267163.4:c.2252C>G	p.Ser751Cys	p.S751C	ENST00000267163	NM_000321.2	751	tCt/tGt					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44514772	44514772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	180	373	0	ENST00000291552.4:c.475G>A	p.Glu159Lys	p.E159K	ENST00000291552	NM_006758.2	159	Gag/Aag					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39934335	39934335	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	85	535	0	ENST00000378444.4:c.264C>G	p.Ile88Met	p.I88M	ENST00000378444	NM_001123385.1	88	atC/atG					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0006154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	121	335	1				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436414	52436414	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	107	397	1	ENST00000460680.1:c.2080C>T	p.Gln694Ter	p.Q694*	ENST00000460680	NM_004656.3	694	Cag/Tag					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	149983017	149983017	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	208	546	0	ENST00000253339.5:c.3241C>T	p.Arg1081Ter	p.R1081*	ENST00000253339		1081	Cga/Tga					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21549161	21549161	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	256	723	1	ENST00000382592.4:c.3115G>T	p.Glu1039Ter	p.E1039*	ENST00000382592	NM_014572.2	1039	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			959	21	378	1	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185146733	185146733	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006620-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	86	429	1	ENST00000265026.3:c.364A>T	p.Arg122Trp	p.R122W	ENST00000265026	NM_004721.4	122	Agg/Tgg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	64	399	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0008841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	54	267	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	61	282	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64138172	64138172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	107	348	0	ENST00000334205.4:c.2095C>T	p.Arg699Cys	p.R699C	ENST00000334205	NM_003942.2	699	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577098	7577098	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001157-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			875	473	626	0	ENST00000269305.4:c.840A>T	p.Arg280Ser	p.R280S	ENST00000269305	NM_001126112.2	280	agA/agT					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29496965	29496965	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	255	333	2	ENST00000358273.4:c.536T>A	p.Leu179Ter	p.L179*	ENST00000358273	NM_001042492.2	179	tTg/tAg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29662010	29662010	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	266	374	0	ENST00000358273.4:c.5967C>G	p.Tyr1989Ter	p.Y1989*	ENST00000358273	NM_001042492.2	1989	taC/taG					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39933631	39933641	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGTGACCGC	CTGGTGACCGC	-			P-0008015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	289	184	0	ENST00000378444.4:c.958_968del	p.Ala320TrpfsTer57	p.A320Wfs*57	ENST00000378444	NM_001123385.1	320	GCGGTCACCAGt/t					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48030577	48030577	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	91	372	0	ENST00000234420.5:c.3191C>T	p.Ala1064Val	p.A1064V	ENST00000234420	NM_000179.2	1064	gCt/gTt					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436887	52436887	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0006235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	50	296	1	ENST00000460680.1:c.1891G>T	p.Glu631Ter	p.E631*	ENST00000460680	NM_004656.3	631	Gag/Tag					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	288	263	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	247	383	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419922	152419922	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	18	378	0	ENST00000206249.3:c.1609T>A	p.Tyr537Asn	p.Y537N	ENST00000206249	NM_000125.3	537	Tat/Aat					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056427	26056427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	25	278	0	ENST00000343677.2:c.230A>G	p.Asn77Ser	p.N77S	ENST00000343677	NM_005319.3	77	aAc/aGc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927411	178927411	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	183	598	0	ENST00000263967.3:c.1174T>C	p.Tyr392His	p.Y392H	ENST00000263967	NM_006218.2	392	Tac/Cac					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68842439	68842439	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	186	583	3	ENST00000261769.5:c.504del	p.Gly169AlafsTer46	p.G169Afs*46	ENST00000261769	NM_004360.3	167	gAa/ga					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67070630	67070642	+	frameshift_variant	Frame_Shift_Del	DEL	ATGTCGACTTAGA	ATGTCGACTTAGA	-			P-0008760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	244	574	0	ENST00000412916.2:c.255_267del	p.Tyr85Ter	p.Y85*	ENST00000412916		85	tATGTCGACTTAGAa/ta					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108236215	108236215	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005800-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	189	971	0	ENST00000278616.4:c.9151G>C	p.Gly3051Arg	p.G3051R	ENST00000278616	NM_000051.3	3051	Gga/Cga					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467512	66467512	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	95	329	0	ENST00000273854.3:c.757T>A	p.Ser253Thr	p.S253T	ENST00000273854	NM_004439.5	253	Tcc/Acc					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15350581	15350581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	60	297	0	ENST00000263377.2:c.3334G>C	p.Glu1112Gln	p.E1112Q	ENST00000263377	NM_058243.2	1112	Gag/Cag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	648	371	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916957	178916957	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200018596		P-0006980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1447	350	670	0	ENST00000263967.3:c.344G>T	p.Arg115Leu	p.R115L	ENST00000263967	NM_006218.2	115	cGa/cTa					NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099403	157099429	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAGCAACAG	CAGCAGCAGCAGCAGCAGCAGCAACAG	-	rs910569810		P-0006980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	141	200	0	ENST00000346085.5:c.360_386del	p.Gln123_Gln131del	p.Q123_Q131del	ENST00000346085	NM_020732.3	114	CAGCAGCAGCAGCAGCAGCAGCAACAG/-					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115966	8115966	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	13	115	0	ENST00000346208.3:c.1312del	p.Met438TrpfsTer37	p.M438Wfs*37	ENST00000346208		438	Atg/tg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	257	649	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	403	436	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554630	63554630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	88	328	0	ENST00000307078.5:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000307078	NM_004655.3	37	Cag/Tag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992807	72992807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1175	136	924	2	ENST00000268489.5:c.1238C>A	p.Thr413Asn	p.T413N	ENST00000268489	NM_006885.3	413	aCc/aAc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044962	47044962	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	350	713	0	ENST00000329236.7:c.2054T>C	p.Leu685Pro	p.L685P	ENST00000329236	NM_001204466.1	685	cTc/cCc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175112	112175139	+	frameshift_variant	Frame_Shift_Del	DEL	GTAGTTCATTATCATCTTTGTCATCAGC	GTAGTTCATTATCATCTTTGTCATCAGC	-			P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	107	259	0	ENST00000257430.4:c.3821_3848del	p.Cys1274LeufsTer5	p.C1274Lfs*5	ENST00000257430	NM_000038.5	1274	tGTAGTTCATTATCATCTTTGTCATCAGCt/tt					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115118701	115118701	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	259	590	0	ENST00000257566.3:c.640del	p.Ser214GlnfsTer29	p.S214Qfs*29	ENST00000257566	NM_016569.3	214	Tca/ca					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	17	428	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	12	346	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0008902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	423	601	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0008902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	228	516	0	ENST00000358273.4:c.6852_6855delTTAC	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164642	112164642	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	75	318	0	ENST00000257430.4:c.1716G>C	p.Leu572Phe	p.L572F	ENST00000257430	NM_000038.5	572	ttG/ttC					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70406614	70406614	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1088	115	599	0	ENST00000373644.4:c.4128T>A	p.Cys1376Ter	p.C1376*	ENST00000373644	NM_030625.2	1376	tgT/tgA					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95590546	95590546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008902-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	107	396	0	ENST00000343455.3:c.1363G>T	p.Val455Phe	p.V455F	ENST00000343455	NM_177438.2	455	Gtt/Ttt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	53	430	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	15	307	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106414	27106414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	33	470	0	ENST00000324856.7:c.6025C>T	p.Leu2009Phe	p.L2009F	ENST00000324856	NM_006015.4	2009	Ctc/Ttc					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999792	100999792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	78	736	0	ENST00000325455.5:c.10C>G	p.Leu4Val	p.L4V	ENST00000325455	NM_001202474.3	4	Ctg/Gtg					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2216725	2216725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200144638		P-0006178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	33	428	1	ENST00000398665.3:c.2369C>T	p.Thr790Met	p.T790M	ENST00000398665	NM_032482.2	790	aCg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	394	415	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162729610	162729610	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	60	278	0	ENST00000367921.3:c.696G>C	p.Leu232Phe	p.L232F	ENST00000367921	NM_006182.2	232	ttG/ttC					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176638779	176638779	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	73	418	0	ENST00000439151.2:c.3379C>G	p.Leu1127Val	p.L1127V	ENST00000439151	NM_022455.4	1127	Ctc/Gtc					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57860054	57860054	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201621277		P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1423	149	608	2	ENST00000228682.2:c.794G>A	p.Arg265Gln	p.R265Q	ENST00000228682	NM_005269.2	265	cGg/cAg					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57480484	57480484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	179	357	0	ENST00000371085.3:c.479G>C	p.Arg160Pro	p.R160P	ENST00000371085	NM_000516.4	160	cGt/cCt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55598073	55598324	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGAGGATGACGAGTTGGCCCTAGACTTAGAAGACTTGCTGAGCTTTTCTTACCAGGTGGCAAAGGGCATGGCTTTCCTCGCCTCCAAGAATGTAAGTGGGAGTGATTCTCTAAAGAGTTTTGTGTTTTGTTTTTTTGATTTTTTTTTTTTTTTTTTTTTTTTTGAGAACAGAGCATTTTAGAGCCATAGTTAAAATGCAGAATGTCATTTTGAAGTGTGGTAACCAAAAGCAGAGGAAATTTAGTTTCTTC	TGGAGGATGACGAGTTGGCCCTAGACTTAGAAGACTTGCTGAGCTTTTCTTACCAGGTGGCAAAGGGCATGGCTTTCCTCGCCTCCAAGAATGTAAGTGGGAGTGATTCTCTAAAGAGTTTTGTGTTTTGTTTTTTTGATTTTTTTTTTTTTTTTTTTTTTTTTGAGAACAGAGCATTTTAGAGCCATAGTTAAAATGCAGAATGTCATTTTGAAGTGTGGTAACCAAAAGCAGAGGAAATTTAGTTTCTTC	-			P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	60	552	0	ENST00000288135.5:c.2270_2361+160del		p.X757_splice	ENST00000288135	NM_000222.2	757						NEWRECORD																																																																									
CD79A	0	MSKCC	GRCh37	19	42383340	42383342	+	frameshift_variant	Frame_Shift_Del	DEL	CAC	CAC	AT			P-0006458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1861	135	546	2	ENST00000221972.3:c.360_362delinsAT	p.Thr121SerfsTer71	p.T121Sfs*71	ENST00000221972	NM_021601.3	120	ggCACc/ggATc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	443	410	0	ENST00000269305.4:c.743G>C	p.Arg248Pro	p.R248P	ENST00000269305	NM_001126112.2	248	cGg/cCg					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876145	35876145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	431	413	0	ENST00000303115.3:c.937G>A	p.Asp313Asn	p.D313N	ENST00000303115	NM_002185.3	313	Gac/Aac					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36937904	36937904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2233	577	675	0	ENST00000361632.4:c.932G>T	p.Arg311Leu	p.R311L	ENST00000361632		311	cGc/cTc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436314	52436314	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	444	448	1	ENST00000460680.1:c.2180A>T	p.Lys727Met	p.K727M	ENST00000460680	NM_004656.3	727	aAg/aTg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55569934	55569934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	278	418	0	ENST00000288135.5:c.801C>A	p.Phe267Leu	p.F267L	ENST00000288135	NM_000222.2	267	ttC/ttA					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391625	139391625	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	727	395	0	ENST00000277541.6:c.6566G>A	p.Cys2189Tyr	p.C2189Y	ENST00000277541	NM_017617.3	2189	tGc/tAc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16021212	16021212	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	332	387	0	ENST00000268712.3:c.2045A>T	p.His682Leu	p.H682L	ENST00000268712	NM_006311.3	682	cAt/cTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	28	340	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66727454	66727454	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1087	27	370	0	ENST00000307102.5:c.170A>C	p.Lys57Thr	p.K57T	ENST00000307102	NM_002755.3	57	aAg/aCg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	163	318	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0004823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	208	418	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0004823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	72	499	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55953890	55953890	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	15	331	0	ENST00000263923.4:c.3546G>T	p.Glu1182Asp	p.E1182D	ENST00000263923	NM_002253.2	1182	gaG/gaT					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411291	63411291	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	308	413	0	ENST00000330258.3:c.1876C>T	p.Arg626Ter	p.R626*	ENST00000330258	NM_152424.3	626	Cga/Tga					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411695	63411695	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	108	420	1	ENST00000330258.3:c.1472G>A	p.Arg491His	p.R491H	ENST00000330258	NM_152424.3	491	cGc/cAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	84	293	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	41	176	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	41	176	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	40	205	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	41	176	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30672306	30672306	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	65	525	1	ENST00000376406.3:c.4654A>T	p.Thr1552Ser	p.T1552S	ENST00000376406	NM_014641.2	1552	Aca/Tca					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47032597	47032597	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	58	451	0	ENST00000329236.7:c.271+1G>A		p.X91_splice	ENST00000329236	NM_001204466.1	91						NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53250023	53250023	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0008560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	115	633	1	ENST00000375401.3:c.226G>C	p.Glu76Gln	p.E76Q	ENST00000375401	NM_004187.3	76	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	328	497	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0006909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	376	467	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0006909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	149	249	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt					NEWRECORD																																																																									
TMEM127	0	MSKCC	GRCh37	2	96920600	96920600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	226	409	0	ENST00000258439.3:c.380G>A	p.Arg127His	p.R127H	ENST00000258439	NM_001193304.2	127	cGt/cAt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212530101	212530101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	72	483	0	ENST00000342788.4:c.1818G>T	p.Lys606Asn	p.K606N	ENST00000342788	NM_005235.2	606	aaG/aaT					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266586	41266586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	343	473	0	ENST00000349496.5:c.383C>T	p.Pro128Leu	p.P128L	ENST00000349496	NM_001904.3	128	cCa/cTa					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152163887	152163887	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	71	468	0	ENST00000206249.3:c.608A>T	p.Glu203Val	p.E203V	ENST00000206249	NM_000125.3	203	gAg/gTg					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111884618	111884618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149554298		P-0006909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	249	695	1	ENST00000341259.2:c.794G>A	p.Arg265Gln	p.R265Q	ENST00000341259	NM_005475.2	265	cGg/cAg					NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913514		P-0008342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	309	435	0	ENST00000288135.5:c.2466T>A	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaA					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45372087	45372087	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	65	397	0	ENST00000262160.6:c.1082A>G	p.Asn361Ser	p.N361S	ENST00000262160	NM_005901.5	361	aAt/aGt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89690847	89690847	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006058-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			350	164	323	0	ENST00000371953.3:c.253+1G>A		p.X85_splice	ENST00000371953	NM_000314.4	85						NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294156	1294156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006058-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			319	93	508	2	ENST00000310581.5:c.845C>T	p.Ala282Val	p.A282V	ENST00000310581	NM_198253.2	282	gCc/gTc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974785	21974785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006058-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			186	43	209	0	ENST00000304494.5:c.42C>G	p.Asp14Glu	p.D14E	ENST00000304494	NM_000077.4	14	gaC/gaG					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974785	21974785	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006058-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			186	43	209	0	ENST00000304494.5:c.42C>G	p.Asp14Glu	p.D14E	ENST00000304494	NM_000077.4	14	gaC/gaG					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0009855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	611	474	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41748309	41748309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	239	350	0	ENST00000226382.2:c.460C>T	p.Arg154Cys	p.R154C	ENST00000226382	NM_003924.3	154	Cgc/Tgc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118362576	118362576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	304	468	0	ENST00000534358.1:c.4937C>T	p.Ser1646Phe	p.S1646F	ENST00000534358	NM_005933.3	1646	tCt/tTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	97	201	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0005381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	149	310	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0005381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	198	265	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0005381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	42	213	1	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	92	342	0	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41526008	41526008	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	173	261	1	ENST00000263253.7:c.1282+1G>A		p.X428_splice	ENST00000263253	NM_001429.3	428						NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16040667	16040717	+	inframe_deletion	In_Frame_Del	DEL	GGCTTTATAATTCTCATTTTTCTTGGTTAAATAGTAATACAAAACACAATC	GGCTTTATAATTCTCATTTTTCTTGGTTAAATAGTAATACAAAACACAATC	-			P-0005381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	65	321	1	ENST00000268712.3:c.1417_1467del	p.Asp473_Ala489del	p.D473_A489del	ENST00000268712	NM_006311.3	473	GATTGTGTTTTGTATTACTATTTAACCAAGAAAAATGAGAATTATAAAGCC/-					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	409	644	0	ENST00000288135.5:c.1669T>A	p.Trp557Arg	p.W557R	ENST00000288135	NM_000222.2	557	Tgg/Agg					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551842	150551843	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0005505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	87	150	0	ENST00000369026.2:c.164_165del	p.Ala55GlyfsTer54	p.A55Gfs*54	ENST00000369026	NM_021960.4	55	gCG/g					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696432	47696432	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	150	496	0	ENST00000347630.2:c.391T>G	p.Trp131Gly	p.W131G	ENST00000347630	NM_001007230.1	131	Tgg/Ggg					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38512269	38512269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	113	383	0	ENST00000254066.5:c.1180C>T	p.Arg394Trp	p.R394W	ENST00000254066	NM_000964.3	394	Cgg/Tgg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49415891	49415891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	181	433	0	ENST00000301067.7:c.16456G>A	p.Val5486Met	p.V5486M	ENST00000301067	NM_003482.3	5486	Gtg/Atg					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38508173	38508173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	154	414	0	ENST00000254066.5:c.481G>A	p.Asp161Asn	p.D161N	ENST00000254066	NM_000964.3	161	Gac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	253	471	1	ENST00000269305.4:c.636delT	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630180	187630180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	136	321	0	ENST00000441802.2:c.802G>A	p.Asp268Asn	p.D268N	ENST00000441802	NM_005245.3	268	Gac/Aac					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69457998	69457998	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	123	352	0	ENST00000227507.2:c.398G>A	p.Arg133Gln	p.R133Q	ENST00000227507	NM_053056.2	133	cGg/cAg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412174	139412646	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTTTCCCGCCCTGGCCCCGGCCGACGCACCGGGCATGCAGATGCACTGGAACTCCCCAATCTGGTCCAGGCAGGTGGCGTCGTTCTGGCACGGGTTCGAGACGCACTCGTTGACGTCGATCTCGCATCGGGGGCCCGTGTAGCCCTGCAGACACTGGCACTCGAAGGAGCCCAGCGTGTTGATGCACTTGCCCGCATGCTCGCAGGGGTTGGCACCTGGCGAGGGCACACGGGTGAGAGGCTGCTCCAGGCACCCTGGCCCCTGCAACACCTCACTGCACACCACCCCCATCGGACTGGCAGGGTCCCATCCCCCATCTAACTGGGCACCCCCTGAAGCCAGAATCGACTTCTCATCGGTTCTGGGGCCAGGCTGCCACCCCCACCTGGCCGCACCCCCTGTGCTGGCACCTACCCAGCGAGCACTCATCCACGTCCTGGCTGCAGGCCGGGCCCGTGTACCCCGAGGGGCA	GGTTTCCCGCCCTGGCCCCGGCCGACGCACCGGGCATGCAGATGCACTGGAACTCCCCAATCTGGTCCAGGCAGGTGGCGTCGTTCTGGCACGGGTTCGAGACGCACTCGTTGACGTCGATCTCGCATCGGGGGCCCGTGTAGCCCTGCAGACACTGGCACTCGAAGGAGCCCAGCGTGTTGATGCACTTGCCCGCATGCTCGCAGGGGTTGGCACCTGGCGAGGGCACACGGGTGAGAGGCTGCTCCAGGCACCCTGGCCCCTGCAACACCTCACTGCACACCACCCCCATCGGACTGGCAGGGTCCCATCCCCCATCTAACTGGGCACCCCCTGAAGCCAGAATCGACTTCTCATCGGTTCTGGGGCCAGGCTGCCACCCCCACCTGGCCGCACCCCCTGTGCTGGCACCTACCCAGCGAGCACTCATCCACGTCCTGGCTGCAGGCCGGGCCCGTGTACCCCGAGGGGCA	-			P-0004829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	150	273	1	ENST00000277541.6:c.1198_1441+30del		p.X400_splice	ENST00000277541	NM_017617.3	400						NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48953720	48953750	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTGTTTGTAGCGATACAAACTTGGAGTTCGC	TTGTTTGTAGCGATACAAACTTGGAGTTCGC	-			P-0004829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	130	239	0	ENST00000267163.4:c.1333-6_1357del		p.X445_splice	ENST00000267163	NM_000321.2	445						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29527606	29527606	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004829-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	140	369	0	ENST00000358273.4:c.1055del	p.Asp352ValfsTer24	p.D352Vfs*24	ENST00000358273	NM_001042492.2	352	gAt/gt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100933485	100933510	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TACAGAGAAGAAAAAAAAGAAATTCA	TACAGAGAAGAAAAAAAAGAAATTCA	-			P-0008124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	28	234	0	ENST00000325455.5:c.1907-27_1907-2del		p.X636_splice	ENST00000325455	NM_001202474.3	636						NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	270	545	0	ENST00000342988.3:c.1051G>A	p.Asp351Asn	p.D351N	ENST00000342988	NM_005359.5	351	Gat/Aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578192	7578192	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	315	579	0	ENST00000269305.4:c.657delC	p.Tyr220MetfsTer27	p.Y220Mfs*27	ENST00000269305	NM_001126112.2	219	ccC/cc					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110250172	110250172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	55	265	0	ENST00000374672.4:c.503G>A	p.Gly168Asp	p.G168D	ENST00000374672	NM_004235.4	168	gGc/gAc					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38512392	38512392	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	660	340	0	ENST00000254066.5:c.1303G>A	p.Gly435Ser	p.G435S	ENST00000254066	NM_000964.3	435	Ggt/Agt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	400	383	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162688917	162688917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	422	411	0	ENST00000367921.3:c.64A>G	p.Lys22Glu	p.K22E	ENST00000367921	NM_006182.2	22	Aaa/Gaa					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52637579	52637579	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	641	612	1	ENST00000394830.3:c.2737G>T	p.Glu913Ter	p.E913*	ENST00000394830	NM_018313.4	913	Gaa/Taa					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69788784	69788784	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	230	408	0	ENST00000352241.4:c.36A>C	p.Glu12Asp	p.E12D	ENST00000352241	NM_198159.2	12	gaA/gaC					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142188201	142188201	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	164	381	0	ENST00000350721.4:c.6530G>A	p.Trp2177Ter	p.W2177*	ENST00000350721	NM_001184.3	2177	tGg/tAg					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149514427	149514427	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	691	522	0	ENST00000261799.4:c.517T>G	p.Tyr173Asp	p.Y173D	ENST00000261799	NM_002609.3	173	Tat/Gat					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431430	49431430	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	385	406	0	ENST00000301067.7:c.9709G>T	p.Glu3237Ter	p.E3237*	ENST00000301067	NM_003482.3	3237	Gag/Tag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10274024	10274024	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	233	472	0	ENST00000330684.3:c.245T>C	p.Leu82Pro	p.L82P	ENST00000330684	NM_001134407.1	82	cTc/cCc					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30313454	30313454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009295-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	504	504	1	ENST00000262643.3:c.1054G>T	p.Val352Phe	p.V352F	ENST00000262643	NM_001238.2	352	Gtc/Ttc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	76	352	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	81	205	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	182	410	0	ENST00000269305.4:c.454C>A	p.Pro152Thr	p.P152T	ENST00000269305	NM_001126112.2	152	Ccg/Acg					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39772534	39772534	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	60	304	0	ENST00000288319.7:c.707T>C	p.Val236Ala	p.V236A	ENST00000288319	NM_182918.3	236	gTa/gCa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44966779	44966779	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0005994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	47	207	0	ENST00000377967.4:c.4003G>T	p.Glu1335Ter	p.E1335*	ENST00000377967	NM_021140.2	1335	Gaa/Taa					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	87	148	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45800144	45800144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	433	574	0	ENST00000372115.3:c.76C>T	p.His26Tyr	p.H26Y	ENST00000372115	NM_001048171.1	26	Cac/Tac					NEWRECORD																																																																									
EIF4E	0	MSKCC	GRCh37	4	99823074	99823074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	281	348	0	ENST00000280892.6:c.138G>C	p.Gln46His	p.Q46H	ENST00000280892	NM_001130678.1	46	caG/caC					NEWRECORD																																																																									
HIST1H3F	0	MSKCC	GRCh37	6	26250806	26250806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2014	628	726	0	ENST00000446824.2:c.28A>G	p.Lys10Glu	p.K10E	ENST00000446824	NM_021018.2	10	Aag/Gag					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32183022	32183022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	251	371	0	ENST00000375023.3:c.2002C>T	p.His668Tyr	p.H668Y	ENST00000375023	NM_004557.3	668	Cac/Tac					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43609958	43609958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	735	1096	0	ENST00000355710.3:c.1910T>C	p.Val637Ala	p.V637A	ENST00000355710	NM_020975.4	637	gTg/gCg					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56480335	56480335	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	280	365	0	ENST00000267101.3:c.442T>C	p.Tyr148His	p.Y148H	ENST00000267101	NM_001982.3	148	Tat/Cat					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618601	37618601	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0000842-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			76	244	412	0	ENST00000447079.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000447079	NM_015083.1	93	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	96	346	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	71	299	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106747	27106747	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	60	324	0	ENST00000324856.7:c.6358G>T	p.Glu2120Ter	p.E2120*	ENST00000324856	NM_006015.4	2120	Gaa/Taa					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12626680	12626680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	80	392	0	ENST00000251849.4:c.1609G>A	p.Val537Ile	p.V537I	ENST00000251849	NM_002880.3	537	Gta/Ata					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	318	638	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89653796	89653798	+	inframe_deletion	In_Frame_Del	DEL	ATT	ATT	-			P-0007006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	82	364	0	ENST00000371953.3:c.97_99delATT	p.Ile33del	p.I33del	ENST00000371953	NM_000314.4	32	ATT/-					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41572252	41572254	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	TCT	TCT	-			P-0007006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	91	344	0	ENST00000263253.7:c.4785_4787delCTT	p.Phe1596del	p.F1596del	ENST00000263253	NM_001429.3	1594	gTCTtc/gtc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164620	112164620	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	67	401	0	ENST00000257430.4:c.1694A>T	p.Glu565Val	p.E565V	ENST00000257430	NM_000038.5	565	gAa/gTa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5222733	5222733	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202163446		P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	162	242	0	ENST00000357368.4:c.3070C>T	p.Pro1024Ser	p.P1024S	ENST00000357368	NM_002850.3	1024	Ccc/Tcc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2106696	2106696	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1462	379	541	1	ENST00000219476.3:c.700G>A	p.Glu234Lys	p.E234K	ENST00000219476	NM_000548.3	234	Gag/Aag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	244	289	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43814539	43814539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	227	430	0	ENST00000372470.3:c.1334G>A	p.Arg445Gln	p.R445Q	ENST00000372470	NM_005373.2	445	cGa/cAa					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89880961	89880961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	339	605	0	ENST00000389301.3:c.250G>A	p.Glu84Lys	p.E84K	ENST00000389301	NM_000135.2	84	Gag/Aag					NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67589599	67589604	+	inframe_deletion	In_Frame_Del	DEL	TCAGTT	TCAGTT	-			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	140	353	0	ENST00000274335.5:c.1365_1370del	p.Phe456_Gln457del	p.F456_Q457del	ENST00000274335		454	acTCAGTTt/act					NEWRECORD																																																																									
SDHC	0	MSKCC	GRCh37	1	161298278	161298278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1348	243	436	0	ENST00000367975.2:c.170C>T	p.Thr57Ile	p.T57I	ENST00000367975	NM_003001.3	57	aCt/aTt					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226589975	226589975	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1237	268	395	1	ENST00000366794.5:c.226G>T	p.Glu76Ter	p.E76*	ENST00000366794	NM_001618.3	76	Gag/Tag					NEWRECORD																																																																									
CENPA	0	MSKCC	GRCh37	2	27016043	27016043	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1454	154	903	0	ENST00000335756.4:c.319G>C	p.Glu107Gln	p.E107Q	ENST00000335756	NM_001809.3	107	Gag/Cag					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158626884	158626884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	203	658	0	ENST00000263640.3:c.786C>G	p.Ile262Met	p.I262M	ENST00000263640	NM_001105.4	262	atC/atG					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178096733	178096733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	88	225	0	ENST00000397062.3:c.598C>G	p.Leu200Val	p.L200V	ENST00000397062	NM_006164.4	200	Ctt/Gtt					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35857155	35857155	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	160	384	0	ENST00000303115.3:c.76C>G	p.Gln26Glu	p.Q26E	ENST00000303115	NM_002185.3	26	Caa/Gaa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56179462	56179462	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	119	364	0	ENST00000399503.3:c.3775C>G	p.Gln1259Glu	p.Q1259E	ENST00000399503	NM_005921.1	1259	Cag/Gag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176824	112176824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	182	468	3	ENST00000257430.4:c.5533C>A	p.His1845Asn	p.H1845N	ENST00000257430	NM_000038.5	1845	Cat/Aat					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131911475	131911475	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	122	291	0	ENST00000265335.6:c.220C>G	p.Gln74Glu	p.Q74E	ENST00000265335		74	Caa/Gaa					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149509485	149509485	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1223	113	481	0	ENST00000261799.4:c.1414G>A	p.Glu472Lys	p.E472K	ENST00000261799	NM_002609.3	472	Gag/Aag					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176722042	176722042	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	216	303	0	ENST00000439151.2:c.7673G>C	p.Arg2558Thr	p.R2558T	ENST00000439151	NM_022455.4	2558	aGa/aCa					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20481446	20481446	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	102	290	0	ENST00000346618.3:c.515C>G	p.Ser172Cys	p.S172C	ENST00000346618	NM_001949.4	172	tCt/tGt					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157100145	157100145	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	44	78	0	ENST00000346085.5:c.1082C>G	p.Ser361Trp	p.S361W	ENST00000346085	NM_020732.3	361	tCg/tGg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878044	151878044	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	127	325	0	ENST00000262189.6:c.6901C>T	p.Gln2301Ter	p.Q2301*	ENST00000262189	NM_170606.2	2301	Cag/Tag					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18719975	18719975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	110	343	0	ENST00000266497.5:c.3872C>T	p.Ser1291Leu	p.S1291L	ENST00000266497		1291	tCa/tTa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68771344	68771344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	196	250	1	ENST00000261769.5:c.26C>A	p.Ser9Ter	p.S9*	ENST00000261769	NM_004360.3	9	tCg/tAg					NEWRECORD																																																																									
AURKB	0	MSKCC	GRCh37	17	8108663	8108663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	294	441	0	ENST00000585124.1:c.732G>A	p.Met244Ile	p.M244I	ENST00000585124	NM_004217.3	244	atG/atA					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29553702	29553702	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	65	214	0	ENST00000358273.4:c.2251G>T	p.Gly751Ter	p.G751*	ENST00000358273	NM_001042492.2	751	Gga/Tga					NEWRECORD																																																																									
H3F3B	0	MSKCC	GRCh37	17	73775161	73775161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1765	443	688	0	ENST00000254810.4:c.95C>G	p.Ser32Cys	p.S32C	ENST00000254810	NM_005324.3	32	tCt/tGt					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2199905	2199905	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	299	622	0	ENST00000398665.3:c.674C>G	p.Ser225Ter	p.S225*	ENST00000398665	NM_032482.2	225	tCa/tGa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70344869	70344869	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1493	275	711	1	ENST00000374080.3:c.2099C>T	p.Ser700Phe	p.S700F	ENST00000374080		700	tCc/tTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008846-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	226	499	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16254887	16254887	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	64	381	0	ENST00000375759.3:c.2152G>T	p.Glu718Ter	p.E718*	ENST00000375759	NM_015001.2	718	Gag/Tag					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65332892	65332892	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	18	249	0	ENST00000342505.4:c.648-1G>T		p.X216_splice	ENST00000342505	NM_002227.2	216						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	309	360	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	226	354	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165843	47165843	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	336	568	0	ENST00000409792.3:c.283G>T	p.Glu95Ter	p.E95*	ENST00000409792	NM_014159.6	95	Gaa/Taa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48603148	48603148	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0006433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	202	281	1	ENST00000342988.3:c.1447+2T>G		p.X483_splice	ENST00000342988	NM_005359.5	483						NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023232	27023233	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	A			P-0006433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	226	206	0	ENST00000324856.7:c.338_339delinsA	p.Leu113GlnfsTer119	p.L113Qfs*119	ENST00000324856	NM_006015.4	113	cTG/cA					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	24	214	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	24	214	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	50	397	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10599868	10599868	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	55	327	1	ENST00000171111.5:c.1708G>T	p.Gly570Ter	p.G570*	ENST00000171111	NM_203500.1	570	Gga/Tga					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045016	47045016	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	31	200	0	ENST00000329236.7:c.2108C>T	p.Ser703Leu	p.S703L	ENST00000329236	NM_001204466.1	703	tCa/tTa					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149435782	149435782	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	38	362	0	ENST00000286301.3:c.2442T>A	p.Asn814Lys	p.N814K	ENST00000286301	NM_005211.3	814	aaT/aaA					NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	34	242	0	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108121575	108121575	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	30	380	0	ENST00000278616.4:c.1383A>T	p.Glu461Asp	p.E461D	ENST00000278616	NM_000051.3	461	gaA/gaT					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14029573	14029573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	17	149	0	ENST00000311895.7:c.1784G>T	p.Arg595Met	p.R595M	ENST00000311895	NM_005236.2	595	aGg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579370	7579370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	39	304	0	ENST00000269305.4:c.317G>T	p.Ser106Ile	p.S106I	ENST00000269305	NM_001126112.2	106	aGc/aTc					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57484597	57484597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	13	175	0	ENST00000371085.3:c.681G>T	p.Gln227His	p.Q227H	ENST00000371085	NM_000516.4	227	caG/caT					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48649559	48649559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	33	261	0	ENST00000376670.3:c.43C>A	p.Leu15Ile	p.L15I	ENST00000376670	NM_002049.3	15	Ctc/Atc					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100611216	100611216	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	23	150	0	ENST00000308731.7:c.1390T>A	p.Cys464Ser	p.C464S	ENST00000308731	NM_000061.2	464	Tgc/Agc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	77	499	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	114	837	2	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25464547	25464547	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	108	500	0	ENST00000264709.3:c.1966C>T	p.Gln656Ter	p.Q656*	ENST00000264709	NM_175629.2	656	Cag/Tag					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39916553	39916553	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	108	633	0	ENST00000378444.4:c.4450G>C	p.Glu1484Gln	p.E1484Q	ENST00000378444	NM_001123385.1	1484	Gag/Cag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	118	288	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577511	7577511	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	163	285	0	ENST00000269305.4:c.770T>G	p.Leu257Arg	p.L257R	ENST00000269305	NM_001126112.2	257	cTg/cGg					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114912188	114912188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	333	607	0	ENST00000543371.1:c.1258C>T	p.Arg420Trp	p.R420W	ENST00000543371	NM_001198531.1	420	Cgg/Tgg					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248657	59248657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	93	400	1	ENST00000371222.2:c.86G>A	p.Ser29Asn	p.S29N	ENST00000371222	NM_002228.3	29	aGt/aAt					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12022357	12022357	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	126	550	0	ENST00000396373.4:c.464-1G>A		p.X155_splice	ENST00000396373	NM_001987.4	155						NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3808929	3808929	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	85	359	0	ENST00000262367.5:c.3295G>A	p.Glu1099Lys	p.E1099K	ENST00000262367	NM_004380.2	1099	Gaa/Aaa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29527441	29527441	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0007380-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	34	260	0	ENST00000358273.4:c.890A>C	p.Lys297Thr	p.K297T	ENST00000358273	NM_001042492.2	297	aAg/aCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	156	661	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	200	410	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178096394	178096394	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	44	510	0	ENST00000397062.3:c.937C>G	p.Leu313Val	p.L313V	ENST00000397062	NM_006164.4	313	Cta/Gta					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98268780	98268780	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	55	660	0	ENST00000331920.6:c.303C>G	p.Phe101Leu	p.F101L	ENST00000331920	NM_000264.3	101	ttC/ttG					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108165758	108165758	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	61	643	0	ENST00000278616.4:c.4881G>C	p.Gln1627His	p.Q1627H	ENST00000278616	NM_000051.3	1627	caG/caC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	452	638	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40738998	40738998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	486	465	0	ENST00000373198.4:c.3286G>T	p.Ala1096Ser	p.A1096S	ENST00000373198	NM_133170.3	1096	Gct/Tct					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174574	112174574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	82	597	4	ENST00000257430.4:c.3283C>T	p.Gln1095Ter	p.Q1095*	ENST00000257430	NM_000038.5	1095	Cag/Tag					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139399161	139399161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	15	392	0	ENST00000277541.6:c.4982G>A	p.Arg1661Gln	p.R1661Q	ENST00000277541	NM_017617.3	1661	cGg/cAg					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333069	70333069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	28	626	0	ENST00000373644.4:c.974C>G	p.Ser325Cys	p.S325C	ENST00000373644	NM_030625.2	325	tCt/tGt					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473625	67473625	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	204	575	0	ENST00000327367.4:c.705C>G	p.Ile235Met	p.I235M	ENST00000327367	NM_005902.3	235	atC/atG					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10032306	10032306	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	78	396	0	ENST00000330684.3:c.517G>C	p.Val173Leu	p.V173L	ENST00000330684	NM_001134407.1	173	Gtg/Ctg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593519	48593519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	120	383	0	ENST00000342988.3:c.1270G>C	p.Asp424His	p.D424H	ENST00000342988	NM_005359.5	424	Gat/Cat					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93640057	93640057	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	103	486	0	ENST00000375746.1:c.1386G>T	p.Gln462His	p.Q462H	ENST00000375746	NM_001174167.1	462	caG/caT					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101911564	101911564	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	170	688	0	ENST00000374994.4:c.1489C>T	p.Gln497Ter	p.Q497*	ENST00000374994	NM_004612.2	497	Caa/Taa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717699	89717699	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	118	551	0	ENST00000371953.3:c.724G>T	p.Glu242Ter	p.E242*	ENST00000371953	NM_000314.4	242	Gag/Tag					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45657025	45657025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	115	634	1	ENST00000407780.3:c.131G>A	p.Arg44His	p.R44H	ENST00000407780	NM_001283052.1	44	cGt/cAt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191571	10191571	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	138	784	0	ENST00000256474.2:c.565del	p.Glu189LysfsTer13	p.E189Kfs*13	ENST00000256474	NM_000551.3	188	ctG/ct					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651363	52651363	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	161	819	0	ENST00000394830.3:c.1733del	p.Asp578AlafsTer9	p.D578Afs*9	ENST00000394830	NM_018313.4	578	gAc/gc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53231140	53231148	+	inframe_deletion	In_Frame_Del	DEL	GGTTTGTGC	GGTTTGTGC	-			P-0005751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	154	405	0	ENST00000375401.3:c.1754_1762del	p.Arg585_Asn587del	p.R585_N587del	ENST00000375401	NM_004187.3	585	cGCACAAACCag/cag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47129681	47129682	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	C			P-0005751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	137	801	0	ENST00000409792.3:c.5198_5199delinsG	p.Asn1733SerfsTer9	p.N1733Sfs*9	ENST00000409792	NM_014159.6	1733	aAC/aG					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0008519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	13	299	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	29	592	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	64	561	0	ENST00000269305.4:c.737T>A	p.Met246Lys	p.M246K	ENST00000269305	NM_001126112.2	246	aTg/aAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	259	490	0	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857896	9857896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	122	388	2	ENST00000330684.3:c.3505C>T	p.Arg1169Trp	p.R1169W	ENST00000330684	NM_001134407.1	1169	Cgg/Tgg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42054349	42054351	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0007576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	143	520	0	ENST00000219905.7:c.7537_7539del	p.Lys2513del	p.K2513del	ENST00000219905	NM_001164273.1	2511	ctGAAg/ctg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	35	578	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577144	7577144	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	62	519	0	ENST00000269305.4:c.794T>C	p.Leu265Pro	p.L265P	ENST00000269305	NM_001126112.2	265	cTg/cCg					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215610547	215610547	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	50	512	0	ENST00000260947.4:c.1709T>G	p.Leu570Arg	p.L570R	ENST00000260947	NM_000465.2	570	cTt/cGt					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187449516	187449516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	90	356	0	ENST00000232014.4:c.364C>T	p.Arg122Trp	p.R122W	ENST00000232014	NM_001130845.1	122	Cgg/Tgg					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061211	38061240	+	inframe_deletion	In_Frame_Del	DEL	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	AGTAGCAGCCGTTCTCGAACATGTTGCCGG	-			P-0007965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	28	342	0	ENST00000250448.2:c.749_778del	p.Ser250_Tyr259del	p.S250_Y259del	ENST00000250448	NM_004496.3	250	tCCGGCAACATGTTCGAGAACGGCTGCTACTtg/ttg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579331	7579331	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	258	457	0	ENST00000269305.4:c.356C>G	p.Ala119Gly	p.A119G	ENST00000269305	NM_001126112.2	119	gCc/gGc					NEWRECORD																																																																									
DCUN1D1	0	MSKCC	GRCh37	3	182681838	182681838	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	289	412	0	ENST00000292782.4:c.221-1G>T		p.X74_splice	ENST00000292782	NM_020640.2	74						NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108216555	108216555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	399	703	1	ENST00000278616.4:c.8504G>T	p.Cys2835Phe	p.C2835F	ENST00000278616	NM_000051.3	2835	tGc/tTc					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37871752	37871752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	71	542	0	ENST00000269571.5:c.1276C>A	p.Gln426Lys	p.Q426K	ENST00000269571		426	Cag/Aag					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7217873	7217873	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	605	855	0	ENST00000380728.2:c.138del	p.Glu47AsnfsTer16	p.E47Nfs*16	ENST00000380728		46	gaA/ga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0001795-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			358	391	489	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001795-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			330	141	367	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56868068	56868068	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0001795-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			670	215	702	0	ENST00000308159.5:c.1566C>A	p.Cys522Ter	p.C522*	ENST00000308159	NM_014669.4	522	tgC/tgA					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56401613	56401613	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0001795-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			581	156	733	0	ENST00000348428.3:c.1475C>G	p.Thr492Arg	p.T492R	ENST00000348428	NM_006785.3	492	aCg/aGg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18499626	18499626	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	181	429	0	ENST00000266497.5:c.1481T>A	p.Ile494Asn	p.I494N	ENST00000266497		494	aTc/aAc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	93	287	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	207	584	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37673738	37673758	+	inframe_deletion	In_Frame_Del	DEL	CAAACTGCCCTACTTCAACAC	CAAACTGCCCTACTTCAACAC	-			P-0006984-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	103	438	0	ENST00000447079.4:c.2894_2914del	p.Lys965_Thr971del	p.K965_T971del	ENST00000447079	NM_015083.1	964	atCAAACTGCCCTACTTCAACACc/atc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	368	678	3	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	313	524	0	ENST00000171111.5:c.959G>T	p.Arg320Leu	p.R320L	ENST00000171111	NM_203500.1	320	cGg/cTg					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	71873137	71873137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	167	559	1	ENST00000357731.5:c.1057C>A	p.Leu353Ile	p.L353I	ENST00000357731	NM_173808.2	353	Cta/Ata					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25965056	25965056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	265	615	0	ENST00000435504.4:c.4150G>A	p.Val1384Ile	p.V1384I	ENST00000435504		1384	Gtt/Att					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142278153	142278153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	126	433	1	ENST00000350721.4:c.1672G>T	p.Asp558Tyr	p.D558Y	ENST00000350721	NM_001184.3	558	Gac/Tac					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157495171	157495171	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	179	492	0	ENST00000346085.5:c.3055C>A	p.Pro1019Thr	p.P1019T	ENST00000346085	NM_020732.3	1019	Cct/Act					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372210	55372210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	133	202	0	ENST00000297316.4:c.900G>T	p.Met300Ile	p.M300I	ENST00000297316	NM_022454.3	300	atG/atT					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28609784	28609784	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	560	404	0	ENST00000241453.7:c.1445T>A	p.Val482Asp	p.V482D	ENST00000241453	NM_004119.2	482	gTc/gAc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3860657	3860657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	201	566	1	ENST00000262367.5:c.922C>T	p.Pro308Ser	p.P308S	ENST00000262367	NM_004380.2	308	Ccc/Tcc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420477	49420477	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	241	412	0	ENST00000301067.7:c.15272del	p.Lys5091SerfsTer56	p.K5091Sfs*56	ENST00000301067	NM_003482.3	5091	aAg/ag					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27099103	27099103	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	211	612	0	ENST00000324856.7:c.3524del	p.Pro1175HisfsTer5	p.P1175Hfs*5	ENST00000324856	NM_006015.4	1173	atC/at					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	447	755	0	ENST00000418115.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000418115	NM_001664.2	42	tAt/tGt					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162740128	162740128	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	85	482	0	ENST00000367921.3:c.1330A>C	p.Ser444Arg	p.S444R	ENST00000367921	NM_006182.2	444	Agc/Cgc					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43606788	43606788	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	280	587	0	ENST00000355710.3:c.1397T>C	p.Phe466Ser	p.F466S	ENST00000355710	NM_020975.4	466	tTt/tCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578496	7578496	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	315	519	2	ENST00000269305.4:c.434T>A	p.Leu145Gln	p.L145Q	ENST00000269305	NM_001126112.2	145	cTg/cAg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546725	9546725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	278	392	1	ENST00000353224.5:c.1297C>T	p.Arg433Trp	p.R433W	ENST00000353224	NM_177990.2	433	Cgg/Tgg					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528971	157528972	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0007386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	193	295	0	ENST00000346085.5:c.6700_6701delCT	p.Leu2234GlyfsTer7	p.L2234Gfs*7	ENST00000346085	NM_020732.3	2232	aaCTct/aact					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713606	30713606	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	211	287	0	ENST00000359013.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000359013	NM_001024847.2	336	Gag/Tag					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30069342	30069342	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	260	612	0	ENST00000338641.4:c.1207G>C	p.Ala403Pro	p.A403P	ENST00000338641	NM_000268.3	403	Gca/Cca					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	226	514	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	418	289	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187627941	187627941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	364	821	0	ENST00000441802.2:c.3041C>T	p.Ser1014Phe	p.S1014F	ENST00000441802	NM_005245.3	1014	tCt/tTt					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	101981679	101981679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	41	70	0	ENST00000282441.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000282441	NM_001130145.2	34	Ggg/Agg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29005287	29005287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	223	499	0	ENST00000282397.4:c.974C>T	p.Ser325Leu	p.S325L	ENST00000282397	NM_002019.4	325	tCa/tTa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15973821	15973821	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	232	498	0	ENST00000268712.3:c.4171G>C	p.Asp1391His	p.D1391H	ENST00000268712	NM_006311.3	1391	Gac/Cac					NEWRECORD																																																																									
CALR	0	MSKCC	GRCh37	19	13054418	13054418	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	270	843	2	ENST00000316448.5:c.1028G>T	p.Gly343Val	p.G343V	ENST00000316448	NM_004343.3	343	gGc/gTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	58	335	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101907053	101907053	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	56	318	0	ENST00000374994.4:c.1013A>T	p.Asn338Ile	p.N338I	ENST00000374994	NM_004612.2	338	aAt/aTt					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61149330	61149330	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	97	425	0	ENST00000295025.8:c.1520G>C	p.Gly507Ala	p.G507A	ENST00000295025	NM_002908.2	507	gGa/gCa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436617	52436617	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0008750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	217	457	1	ENST00000460680.1:c.2056+1G>A		p.X686_splice	ENST00000460680	NM_004656.3	686						NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90958408	90958408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	93	468	0	ENST00000265433.3:c.2030A>G	p.Asp677Gly	p.D677G	ENST00000265433	NM_002485.4	677	gAt/gGt					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115110086	115110086	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	57	275	0	ENST00000257566.3:c.1792G>T	p.Gly598Ter	p.G598*	ENST00000257566	NM_016569.3	598	Gga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003942-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			285	176	432	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27105931	27105931	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003942-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			608	82	382	3	ENST00000324856.7:c.5548del	p.Asp1850ThrfsTer33	p.D1850Tfs*33	ENST00000324856	NM_006015.4	1848	Ggg/gg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441252	52441252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003942-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			458	273	558	0	ENST00000460680.1:c.518A>G	p.Tyr173Cys	p.Y173C	ENST00000460680	NM_004656.3	173	tAt/tGt					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66777425	66777425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003942-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			433	130	575	0	ENST00000307102.5:c.791C>G	p.Pro264Arg	p.P264R	ENST00000307102	NM_002755.3	264	cCt/cGt					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63533682	63533682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003942-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			328	363	556	2	ENST00000307078.5:c.1472C>T	p.Ala491Val	p.A491V	ENST00000307078	NM_004655.3	491	gCc/gTc					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57751902	57751902	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	47	398	0	ENST00000274289.3:c.1335T>G	p.Ile445Met	p.I445M	ENST00000274289	NM_006622.3	445	atT/atG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579541	7579541	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006268-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	39	392	1	ENST00000269305.4:c.146A>T	p.Asp49Val	p.D49V	ENST00000269305	NM_001126112.2	49	gAt/gTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	319	396	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	60	226	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	112	562	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577599	7577599	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	52	309	0	ENST00000269305.4:c.682G>C	p.Asp228His	p.D228H	ENST00000269305	NM_001126112.2	228	Gac/Cac					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104263941	104263941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	17	124	0	ENST00000369902.3:c.32G>A	p.Gly11Asp	p.G11D	ENST00000369902	NM_016169.3	11	gGc/gAc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584497	48584497	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	93	213	0	ENST00000342988.3:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000342988	NM_005359.5	224	Cag/Tag					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29445400	29445400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	96	485	1	ENST00000389048.3:c.3433C>A	p.Leu1145Met	p.L1145M	ENST00000389048	NM_004304.4	1145	Ctg/Atg					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61722634	61722634	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	145	420	0	ENST00000401558.2:c.1003C>G	p.Gln335Glu	p.Q335E	ENST00000401558	NM_003400.3	335	Caa/Gaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579545	7579545	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	77	359	0	ENST00000269305.4:c.142G>C	p.Asp48His	p.D48H	ENST00000269305	NM_001126112.2	48	Gac/Cac					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63534390	63534390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	118	398	0	ENST00000307078.5:c.1131G>C	p.Arg377Ser	p.R377S	ENST00000307078	NM_004655.3	377	agG/agC					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8500764	8500765	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0009161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	142	295	0	ENST00000356435.5:c.2117_2118delinsAA	p.Thr706Lys	p.T706K	ENST00000356435		706	aCC/aAA					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	278	541	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	212	424	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	123	379	0	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974721	21974721	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	123	379	0	ENST00000304494.5:c.106del	p.Ala36ArgfsTer17	p.A36Rfs*17	ENST00000304494	NM_000077.4	36	Gcg/cg					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056402	26056402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	188	331	0	ENST00000343677.2:c.255G>C	p.Lys85Asn	p.K85N	ENST00000343677	NM_005319.3	85	aaG/aaC					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53230752	53230752	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	363	357	0	ENST00000375401.3:c.2041C>T	p.Arg681Ter	p.R681*	ENST00000375401	NM_004187.3	681	Cga/Tga					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72400827	72400827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	271	957	0	ENST00000357731.5:c.344C>A	p.Pro115Gln	p.P115Q	ENST00000357731	NM_173808.2	115	cCa/cAa					NEWRECORD																																																																									
BCL2L11	0	MSKCC	GRCh37	2	111881518	111881518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	243	472	0	ENST00000393256.3:c.196C>T	p.Pro66Ser	p.P66S	ENST00000393256	NM_006538.4	66	Cca/Tca					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113307	209113307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	197	565	0	ENST00000345146.2:c.200A>G	p.His67Arg	p.H67R	ENST00000345146	NM_005896.2	67	cAt/cGt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180056291	180056291	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199942873		P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	305	695	0	ENST00000261937.6:c.953G>A	p.Arg318Gln	p.R318Q	ENST00000261937	NM_182925.4	318	cGa/cAa					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106526712	106526712	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	148	336	0	ENST00000359195.3:c.3005C>A	p.Thr1002Lys	p.T1002K	ENST00000359195	NM_002649.2	1002	aCa/aAa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116371821	116371821	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	155	543	0	ENST00000397752.3:c.1300T>A	p.Phe434Ile	p.F434I	ENST00000397752	NM_000245.2	434	Ttc/Atc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945093	151945093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	54	376	0	ENST00000262189.6:c.2426G>T	p.Gly809Val	p.G809V	ENST00000262189	NM_170606.2	809	gGa/gTa					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37883981	37883981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	204	447	0	ENST00000269571.5:c.3452C>T	p.Ser1151Leu	p.S1151L	ENST00000269571		1151	tCg/tTg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47038563	47038563	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0004851-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	288	397	0	ENST00000329236.7:c.493+1G>C		p.X165_splice	ENST00000329236	NM_001204466.1	165						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	57	374	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	301	439	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30732960	30732960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	268	381	0	ENST00000359013.4:c.1648C>A	p.Pro550Thr	p.P550T	ENST00000359013	NM_001024847.2	550	Cca/Aca					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17945494	17945494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	81	464	0	ENST00000458235.1:c.2236G>C	p.Ala746Pro	p.A746P	ENST00000458235	NM_000215.3	746	Gcc/Ccc					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56436050	56436050	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	255	401	0	ENST00000407977.2:c.1087del	p.Arg363GlyfsTer56	p.R363Gfs*56	ENST00000407977		363	Cgg/gg					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0005695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	315	599	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	330	702	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	223	288	0	ENST00000263967.3:c.1625A>C	p.Glu542Ala	p.E542A	ENST00000263967	NM_006218.2	542	gAa/gCa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151853037	151853037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	25	378	1	ENST00000262189.6:c.11918C>T	p.Ala3973Val	p.A3973V	ENST00000262189	NM_170606.2	3973	gCc/gTc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139396746	139396746	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	39	139	0	ENST00000277541.6:c.5362G>A	p.Gly1788Ser	p.G1788S	ENST00000277541	NM_017617.3	1788	Ggc/Agc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0009114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	79	427	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81944243	81944243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	88	443	0	ENST00000359376.3:c.1852C>T	p.Arg618Cys	p.R618C	ENST00000359376	NM_002661.3	618	Cgc/Tgc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175351	112175364	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTCTTCAGGAGC	TTTTCTTCAGGAGC	-			P-0009114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	43	168	0	ENST00000257430.4:c.4060_4073del	p.Phe1354GlufsTer16	p.F1354Efs*16	ENST00000257430	NM_000038.5	1354	TTTTCTTCAGGAGCg/g					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112170677	112170679	+	stop_gained	Nonsense_Mutation	ONP	CTT	CTT	ATA			P-0009114-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	57	282	0	ENST00000257430.4:c.1773_1775delinsATA	p.Leu592Ter	p.L592*	ENST00000257430	NM_000038.5	591	gcCTTa/gcATAa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	38	358	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720833	89720836	+	frameshift_variant	Frame_Shift_Del	DEL	AAAT	AAAT	-			P-0007850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	25	184	0	ENST00000371953.3:c.987_990delTAAA	p.Asn329LysfsTer14	p.N329Kfs*14	ENST00000371953	NM_000314.4	328	gcAAAT/gc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711885	89711885	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	59	317	0	ENST00000371953.3:c.504delT	p.Ser170ValfsTer13	p.S170Vfs*13	ENST00000371953	NM_000314.4	168	aTt/at					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	47	254	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162741994	162741994	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	272	474	0	ENST00000367921.3:c.1685T>G	p.Leu562Arg	p.L562R	ENST00000367921	NM_006182.2	562	cTc/cGc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89390968	89390968	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	187	432	2	ENST00000336596.2:c.1034G>T	p.Trp345Leu	p.W345L	ENST00000336596	NM_005233.5	345	tGg/tTg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108218084	108218084	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	151	305	0	ENST00000278616.4:c.8663T>C	p.Ile2888Thr	p.I2888T	ENST00000278616	NM_000051.3	2888	aTa/aCa					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18443861	18443861	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	141	327	0	ENST00000266497.5:c.834T>A	p.Phe278Leu	p.F278L	ENST00000266497		278	ttT/ttA					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18641453	18641453	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	202	410	0	ENST00000266497.5:c.2452T>A	p.Phe818Ile	p.F818I	ENST00000266497		818	Ttc/Atc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40727098	40727098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	242	544	0	ENST00000373198.4:c.3866C>T	p.Ser1289Phe	p.S1289F	ENST00000373198	NM_133170.3	1289	tCc/tTc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	46	483	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	133	491	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	53	339	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	47	396	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49446027	49446027	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	70	468	0	ENST00000301067.7:c.1439del	p.Pro480LeufsTer450	p.P480Lfs*450	ENST00000301067	NM_003482.3	480	cCt/ct					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131973772	131973772	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	17	328	0	ENST00000265335.6:c.3476-1G>A		p.X1159_splice	ENST00000265335		1159						NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55221846	55221846	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	130	524	0	ENST00000275493.2:c.889+1G>A		p.X297_splice	ENST00000275493	NM_005228.3	297						NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36923394	36923394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	90	379	2	ENST00000358127.4:c.868G>A	p.Gly290Arg	p.G290R	ENST00000358127	NM_001280556.1	290	Ggg/Agg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41265579	41266277	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCATTAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAA	GTCATTAAATCTTTAGTTACTGAATTGGGGCTCTGCTTCGTTGCCATTAAGCCAGTCTGGCTGAGATCCCCCTGCTTTCCTCTCTCCCTGCTTACTTGTCAGGCTACCTTTTGCTCCATTTTCTGCTCACTCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAA	-			P-0007632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	58	399	0	ENST00000349496.5:c.13+11_241+37del		p.X5_splice	ENST00000349496	NM_001904.3	5						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	30	433	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143045772	143045772	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145209328		P-0004780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	165	330	0	ENST00000262992.4:c.1862C>T	p.Thr621Met	p.T621M	ENST00000262992	NM_001101669.1	621	aCg/aTg					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40363489	40363489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	170	438	0	ENST00000397332.2:c.740G>A	p.Arg247His	p.R247H	ENST00000397332	NM_001033082.2	247	cGt/cAt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76890141	76890148	+	frameshift_variant	Frame_Shift_Del	DEL	ATTTCTTT	ATTTCTTT	-			P-0004780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	514	285	0	ENST00000373344.5:c.4746_4753del	p.Lys1583SerfsTer15	p.K1583Sfs*15	ENST00000373344	NM_000489.3	1582	acAAAGAAATct/acct					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	73	76	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	276	446	15	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	98003010	98003010	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	25	585	0	ENST00000289081.3:c.266T>A	p.Ile89Asn	p.I89N	ENST00000289081	NM_000136.2	89	aTt/aAt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3900866	3900881	+	frameshift_variant	Frame_Shift_Del	DEL	CCTCCTCGTAGAAGCT	CCTCCTCGTAGAAGCT	-			P-0007750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	230	526	8	ENST00000262367.5:c.215_230del	p.Glu72AlafsTer10	p.E72Afs*10	ENST00000262367	NM_004380.2	72	gAGCTTCTACGAGGAGGc/gc					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577408	64577408	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	161	413	0	ENST00000337652.1:c.174del	p.Glu60SerfsTer59	p.E60Sfs*59	ENST00000337652	NM_130803.2	58	gtT/gt					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25469632	25469632	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	77	419	1	ENST00000264709.3:c.1136G>T	p.Arg379Leu	p.R379L	ENST00000264709	NM_175629.2	379	cGc/cTc					NEWRECORD																																																																									
NFE2L2	4780	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs1057519920		P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	68	256	0	ENST00000397062.3:c.85G>C	p.Asp29His	p.D29H	ENST00000397062	NM_006164.4	29	Gat/Cat					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	36	243	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8331733	8331733	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	65	316	0	ENST00000356435.5:c.5383G>T	p.Gly1795Cys	p.G1795C	ENST00000356435		1795	Ggc/Tgc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133226280	133226280	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	93	469	0	ENST00000320574.5:c.3778G>T	p.Ala1260Ser	p.A1260S	ENST00000320574	NM_006231.2	1260	Gcc/Tcc					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21557844	21557844	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	80	456	0	ENST00000382592.4:c.2001G>T	p.Met667Ile	p.M667I	ENST00000382592	NM_014572.2	667	atG/atT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7573982	7573982	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	134	569	1	ENST00000269305.4:c.1045G>T	p.Glu349Ter	p.E349*	ENST00000269305	NM_001126112.2	349	Gaa/Taa					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31016154	31016154	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1269	96	532	1	ENST00000375687.4:c.400G>T	p.Ala134Ser	p.A134S	ENST00000375687	NM_015338.5	134	Gca/Tca					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790089	40790089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	49	346	0	ENST00000373198.4:c.2642G>T	p.Arg881Leu	p.R881L	ENST00000373198	NM_133170.3	881	cGg/cTg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	273	354	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	156	398	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99170840	99170840	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	64	443	0	ENST00000074304.5:c.1469C>T	p.Ser490Leu	p.S490L	ENST00000074304	NM_001134224.1	490	tCg/tTg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212812230	212812230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	59	377	0	ENST00000342788.4:c.346G>T	p.Ala116Ser	p.A116S	ENST00000342788	NM_005235.2	116	Gcc/Tcc					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5022108	5022108	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	123	441	0	ENST00000381652.3:c.121G>C	p.Val41Leu	p.V41L	ENST00000381652	NM_004972.3	41	Gtg/Ctg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341944	8341944	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	97	319	0	ENST00000356435.5:c.4696A>G	p.Ile1566Val	p.I1566V	ENST00000356435		1566	Ata/Gta					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8501045	8501045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	72	276	0	ENST00000356435.5:c.1837C>A	p.Pro613Thr	p.P613T	ENST00000356435		613	Cct/Act					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100998186	100998186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	58	324	0	ENST00000325455.5:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000325455	NM_001202474.3	539	cCg/cGg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2129062	2129062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	51	360	0	ENST00000219476.3:c.2996G>C	p.Ser999Thr	p.S999T	ENST00000219476	NM_000548.3	999	aGc/aCc					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007883	45007919	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAAGATAGTTAAGTGGGGTAAGTCTTACATTCTTTTG	CAAGATAGTTAAGTGGGGTAAGTCTTACATTCTTTTG	-			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	65	272	0	ENST00000558401.1:c.330_346+20del		p.X110_splice	ENST00000558401	NM_004048.2	110						NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45796944	45796944	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	62	430	0	ENST00000372115.3:c.1344del	p.Gln449ArgfsTer4	p.Q449Rfs*4	ENST00000372115	NM_001048171.1	448	ggG/gg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47038773	47038773	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	54	325	0	ENST00000329236.7:c.551del	p.Gly184ValfsTer5	p.G184Vfs*5	ENST00000329236	NM_001204466.1	183	ctG/ct					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857510	9857510	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	28	305	1	ENST00000330684.3:c.3891del	p.Asp1297GlufsTer6	p.D1297Efs*6	ENST00000330684	NM_001134407.1	1297	gaC/ga					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	66	67	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0005424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	129	141	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49397710	49397710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	328	282	0	ENST00000418115.1:c.514G>A	p.Glu172Lys	p.E172K	ENST00000418115	NM_001664.2	172	Gaa/Aaa					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1803208	1803208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	338	213	0	ENST00000260795.2:c.560C>G	p.Ser187Cys	p.S187C	ENST00000260795		187	tCc/tGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	100	404	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009765-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	88	597	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21970927	21970927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	109	513	1	ENST00000304494.5:c.431G>A	p.Arg144His	p.R144H	ENST00000304494	NM_000077.4	144	cGc/cAc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970927	21970927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	109	513	1	ENST00000304494.5:c.431G>A	p.Arg144His	p.R144H	ENST00000304494	NM_000077.4	144	cGc/cAc					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176518049	176518049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	152	632	0	ENST00000292408.4:c.547C>T	p.Arg183Cys	p.R183C	ENST00000292408	NM_213647.1	183	Cgc/Tgc					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37667868	37667868	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	70	522	0	ENST00000447079.4:c.2753A>G	p.Asp918Gly	p.D918G	ENST00000447079	NM_015083.1	918	gAt/gGt					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37649069	37649070	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0005639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	95	534	0	ENST00000447079.4:c.2175_2176del	p.Asp725GlufsTer3	p.D725Efs*3	ENST00000447079	NM_015083.1	725	gAC/g					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	40	570	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	61	645	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55953914	55953914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	46	470	0	ENST00000263923.4:c.3522C>A	p.Asp1174Glu	p.D1174E	ENST00000263923	NM_002253.2	1174	gaC/gaA					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878863	151878863	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	51	636	1	ENST00000262189.6:c.6082C>T	p.Arg2028Ter	p.R2028*	ENST00000262189	NM_170606.2	2028	Cga/Tga					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118374913	118374913	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	67	876	0	ENST00000534358.1:c.8306A>G	p.His2769Arg	p.H2769R	ENST00000534358	NM_005933.3	2769	cAt/cGt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575091	48575091	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	51	783	0	ENST00000342988.3:c.285T>G	p.Tyr95Ter	p.Y95*	ENST00000342988	NM_005359.5	95	taT/taG					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7172365	7172365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	76	656	3	ENST00000302850.5:c.1204G>A	p.Ala402Thr	p.A402T	ENST00000302850	NM_000208.2	402	Gct/Act					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11123691	11123691	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	48	653	0	ENST00000344626.4:c.2341A>G	p.Met781Val	p.M781V	ENST00000344626	NM_003072.3	781	Atg/Gtg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	287	468	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	232	431	1	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	384	617	1	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187540406	187540406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	35	224	0	ENST00000441802.2:c.7334G>A	p.Gly2445Glu	p.G2445E	ENST00000441802	NM_005245.3	2445	gGg/gAg					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149515369	149515369	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	68	310	1	ENST00000261799.4:c.113C>T	p.Pro38Leu	p.P38L	ENST00000261799	NM_002609.3	38	cCg/cTg					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58734200	58734200	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	A	A	T			P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1675	153	766	0	ENST00000305921.3:c.1258A>T	p.Lys420Ter	p.K420*	ENST00000305921	NM_003620.3	420	Aag/Tag					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220449	1220449	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	100	567	0	ENST00000326873.7:c.542A>C	p.Asn181Thr	p.N181T	ENST00000326873	NM_000455.4	181	aAc/aCc					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7172365	7172365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	229	540	0	ENST00000302850.5:c.1204G>T	p.Ala402Ser	p.A402S	ENST00000302850	NM_000208.2	402	Gct/Tct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	78	298	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72428534	72428534	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	32	238	0	ENST00000477973.2:c.468A>C	p.Gln157Pro	p.Q157P	ENST00000477973	NM_012234.5	157	cAa/cCa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55140703	55140703	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	49	320	0	ENST00000257290.5:c.1564C>G	p.Arg522Gly	p.R522G	ENST00000257290	NM_006206.4	522	Cgt/Ggt					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81355312	81355312	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	40	423	0	ENST00000222390.5:c.1062C>G	p.Cys354Trp	p.C354W	ENST00000222390	NM_000601.4	354	tgC/tgG					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151856085	151856085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	59	388	0	ENST00000262189.6:c.11533G>A	p.Glu3845Lys	p.E3845K	ENST00000262189	NM_170606.2	3845	Gaa/Aaa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2111926	2111926	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	75	458	0	ENST00000219476.3:c.1174G>T	p.Glu392Ter	p.E392*	ENST00000219476	NM_000548.3	392	Gag/Tag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47158152	47158152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	234	573	0	ENST00000409792.3:c.4547G>C	p.Cys1516Ser	p.C1516S	ENST00000409792	NM_014159.6	1516	tGt/tCt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52668715	52668715	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	337	602	0	ENST00000394830.3:c.1204C>T	p.Gln402Ter	p.Q402*	ENST00000394830	NM_018313.4	402	Cag/Tag					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138665017	138665017	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	76	70	0	ENST00000330315.3:c.548C>A	p.Ala183Asp	p.A183D	ENST00000330315	NM_023067.3	183	gCc/gAc					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106197464	106197464	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	415	693	0	ENST00000380013.4:c.5797G>T	p.Glu1933Ter	p.E1933*	ENST00000380013	NM_001127208.2	1933	Gaa/Taa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32187372	32187372	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	214	519	0	ENST00000375023.3:c.1507C>G	p.Pro503Ala	p.P503A	ENST00000375023	NM_004557.3	503	Cca/Gca					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38271732	38271732	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	315	685	0	ENST00000425967.3:c.2217A>C	p.Glu739Asp	p.E739D	ENST00000425967	NM_001174067.1	739	gaA/gaC					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103520561	103520561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	272	543	0	ENST00000355739.4:c.2632C>G	p.Leu878Val	p.L878V	ENST00000355739	NM_000123.3	878	Ctc/Gtc					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44514799	44514799	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	258	427	0	ENST00000291552.4:c.448T>A	p.Phe150Ile	p.F150I	ENST00000291552	NM_006758.2	150	Ttc/Atc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53231130	53231130	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	305	328	0	ENST00000375401.3:c.1772G>T	p.Gly591Val	p.G591V	ENST00000375401	NM_004187.3	591	gGa/gTa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188239	10188241	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0006542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	317	545	0	ENST00000256474.2:c.384_386del	p.Leu129del	p.L129del	ENST00000256474	NM_000551.3	128	CTT/-					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	185	536	1	ENST00000250448.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000250448	NM_004496.3	219	Cgc/Tgc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105997	27105997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	76	227	0	ENST00000324856.7:c.5608C>T	p.Pro1870Ser	p.P1870S	ENST00000324856	NM_006015.4	1870	Cct/Tct					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32168752	32168752	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	170	556	0	ENST00000375023.3:c.4171C>A	p.Arg1391Ser	p.R1391S	ENST00000375023	NM_004557.3	1391	Cgc/Agc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169083	32169083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	150	445	1	ENST00000375023.3:c.3950G>A	p.Arg1317Gln	p.R1317Q	ENST00000375023	NM_004557.3	1317	cGg/cAg					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98209203	98209203	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	44	285	0	ENST00000331920.6:c.4335C>G	p.Ser1445Arg	p.S1445R	ENST00000331920	NM_000264.3	1445	agC/agG					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9934581	9934581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	184	511	0	ENST00000330684.3:c.1574C>T	p.Ser525Phe	p.S525F	ENST00000330684	NM_001134407.1	525	tCt/tTt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610522	10610522	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	139	488	0	ENST00000171111.5:c.188C>T	p.Ala63Val	p.A63V	ENST00000171111	NM_203500.1	63	gCc/gTc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32915083	32915084	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	287	788	0	ENST00000380152.3:c.6591_6592delTG	p.Glu2198AsnfsTer4	p.E2198Nfs*4	ENST00000380152		2197	acTGaa/acaa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061010	38061021	+	inframe_deletion	In_Frame_Del	DEL	CGGGGGCCGGCG	CGGGGGCCGGCG	-			P-0006461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	58	179	0	ENST00000250448.2:c.968_979del	p.Ala323_Pro326del	p.A323_P326del	ENST00000250448	NM_004496.3	323	gCGCCGGCCCCCGgg/ggg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	27	304	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187510333	187510333	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	25	372	0	ENST00000441802.2:c.13180C>G	p.Leu4394Val	p.L4394V	ENST00000441802	NM_005245.3	4394	Ctg/Gtg					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110250442	110250444	+	inframe_deletion	In_Frame_Del	DEL	CCG	CCG	-			P-0006262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	30	426	0	ENST00000374672.4:c.231_233delCGG	p.Gly78del	p.G78del	ENST00000374672	NM_004235.4	77	ggCGGa/gga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574014	7574014	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	82	673	0	ENST00000269305.4:c.1013del	p.Phe338SerfsTer7	p.F338Sfs*7	ENST00000269305	NM_001126112.2	338	tTc/tc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	186	423	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52696190	52696190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1342	153	574	1	ENST00000394830.3:c.487G>A	p.Asp163Asn	p.D163N	ENST00000394830	NM_018313.4	163	Gat/Aat					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28599030	28599030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	74	429	1	ENST00000241453.7:c.2258C>T	p.Ser753Leu	p.S753L	ENST00000241453	NM_004119.2	753	tCa/tTa					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59853848	59853848	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009248-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	112	550	0	ENST00000259008.2:c.2011G>C	p.Glu671Gln	p.E671Q	ENST00000259008	NM_032043.2	671	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005571-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			33	74	580	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	86	393	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971194	21971194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	54	218	1	ENST00000304494.5:c.164G>T	p.Gly55Val	p.G55V	ENST00000304494	NM_000077.4	55	gGc/gTc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971194	21971194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	54	218	1	ENST00000304494.5:c.164G>T	p.Gly55Val	p.G55V	ENST00000304494	NM_000077.4	55	gGc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000282-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			504	927	551	5	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729601	41729601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000282-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			983	1392	730	8	ENST00000242208.4:c.928C>T	p.Arg310Trp	p.R310W	ENST00000242208	NM_002192.2	310	Cgg/Tgg					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114710664	114710664	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000282-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	1186	724	8	ENST00000543371.1:c.149A>G	p.Asn50Ser	p.N50S	ENST00000543371	NM_001198531.1	50	aAt/aGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0008694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	77	497	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0008694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	52	220	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32907476	32907476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	49	572	0	ENST00000380152.3:c.1861G>A	p.Glu621Lys	p.E621K	ENST00000380152		621	Gaa/Aaa					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15841345	15841345	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	260	1084	1	ENST00000307771.7:c.1429C>T	p.Gln477Ter	p.Q477*	ENST00000307771	NM_005089.3	477	Cag/Tag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023401	27023401	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008694-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	169	615	0	ENST00000324856.7:c.508del	p.His170ThrfsTer62	p.H170Tfs*62	ENST00000324856	NM_006015.4	169	ttC/tt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	96	732	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597488	10597488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	59	506	0	ENST00000171111.5:c.1715A>G	p.Tyr572Cys	p.Y572C	ENST00000171111	NM_203500.1	572	tAt/tGt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212288924	212288924	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	93	586	0	ENST00000342788.4:c.2822A>T	p.Gln941Leu	p.Q941L	ENST00000342788	NM_005235.2	941	cAg/cTg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643705	52643705	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	41	421	0	ENST00000394830.3:c.2191A>T	p.Met731Leu	p.M731L	ENST00000394830	NM_018313.4	731	Atg/Ttg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643715	52643715	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	43	439	0	ENST00000394830.3:c.2181C>G	p.Asp727Glu	p.D727E	ENST00000394830	NM_018313.4	727	gaC/gaG					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189586470	189586470	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	88	395	0	ENST00000264731.3:c.1094C>A	p.Ser365Ter	p.S365*	ENST00000264731	NM_003722.4	365	tCg/tAg					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6043656	6043656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	38	432	0	ENST00000265849.7:c.197T>C	p.Ile66Thr	p.I66T	ENST00000265849	NM_000535.5	66	aTt/aCt					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509312	106509312	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	95	586	2	ENST00000359195.3:c.1306G>T	p.Gly436Cys	p.G436C	ENST00000359195	NM_002649.2	436	Ggt/Tgt					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31376690	31376690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	89	478	0	ENST00000328111.2:c.685G>T	p.Val229Leu	p.V229L	ENST00000328111	NM_006892.3	229	Gtg/Ttg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221264	1221267	+	frameshift_variant	Frame_Shift_Del	DEL	TTGT	TTGT	-			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	44	776	0	ENST00000326873.7:c.790_793del	p.Phe264ArgfsTer22	p.F264Rfs*22	ENST00000326873	NM_000455.4	263	TTGTtt/tt					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106515225	106515226	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0008874-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	65	494	0	ENST00000359195.3:c.2368_2369delinsTT	p.Gly790Leu	p.G790L	ENST00000359195	NM_002649.2	790	GGa/TTa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183770	10183770	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs5030805		P-0009348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	58	240	0	ENST00000256474.2:c.239G>A	p.Ser80Asn	p.S80N	ENST00000256474	NM_000551.3	80	aGt/aAt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47158112	47158112	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0009348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	128	545	0	ENST00000409792.3:c.4586+1G>A		p.X1529_splice	ENST00000409792	NM_014159.6	1529						NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643538	52643538	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	80	449	0	ENST00000394830.3:c.2358del	p.Phe786LeufsTer5	p.F786Lfs*5	ENST00000394830	NM_018313.4	786	ttT/tt					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101911508	101911509	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0009348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	120	418	0	ENST00000374994.4:c.1433_1434del	p.Asn478ArgfsTer4	p.N478Rfs*4	ENST00000374994	NM_004612.2	478	aAT/a					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86665641	86665641	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	406	286	0	ENST00000274376.6:c.1622T>G	p.Phe541Cys	p.F541C	ENST00000274376	NM_002890.2	541	tTt/tGt					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	190	311	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	166	204	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220371	1220371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	184	241	0	ENST00000326873.7:c.465-1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155						NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25471091	25471091	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	117	285	0	ENST00000264709.3:c.670A>G	p.Met224Val	p.M224V	ENST00000264709	NM_175629.2	224	Atg/Gtg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29451773	29451773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	114	299	0	ENST00000389048.3:c.2792G>T	p.Gly931Val	p.G931V	ENST00000389048	NM_004304.4	931	gGt/gTt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173893	112173893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	104	210	0	ENST00000257430.4:c.2602G>A	p.Glu868Lys	p.E868K	ENST00000257430	NM_000038.5	868	Gaa/Aaa					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508350	106508350	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	24	82	0	ENST00000359195.3:c.344T>G	p.Val115Gly	p.V115G	ENST00000359195	NM_002649.2	115	gTg/gGg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89347239	89347239	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	133	349	0	ENST00000301030.4:c.5711A>G	p.Glu1904Gly	p.E1904G	ENST00000301030	NM_001256183.1	1904	gAa/gGa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602647	10602647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	154	266	0	ENST00000171111.5:c.931C>T	p.His311Tyr	p.H311Y	ENST00000171111	NM_203500.1	311	Cac/Tac					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41100988	41100988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	77	195	0	ENST00000373198.4:c.1368G>A	p.Met456Ile	p.M456I	ENST00000373198	NM_133170.3	456	atG/atA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	172	438	0	ENST00000269305.4:c.403T>C	p.Cys135Arg	p.C135R	ENST00000269305	NM_001126112.2	135	Tgc/Cgc					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67457264	67457264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	151	363	1	ENST00000327367.4:c.238C>T	p.Arg80Trp	p.R80W	ENST00000327367	NM_005902.3	80	Cgg/Tgg					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115109987	115109987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	114	376	0	ENST00000257566.3:c.1891C>G	p.Leu631Val	p.L631V	ENST00000257566	NM_016569.3	631	Ctg/Gtg					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123298118	123298118	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	102	556	0	ENST00000358487.5:c.736C>A	p.Leu246Met	p.L246M	ENST00000358487	NM_000141.4	246	Ctg/Atg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32900269	32900269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	212	479	1	ENST00000380152.3:c.457C>A	p.Pro153Thr	p.P153T	ENST00000380152		153	Cca/Aca					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95583972	95583972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	86	377	0	ENST00000343455.3:c.1496G>A	p.Arg499Lys	p.R499K	ENST00000343455	NM_177438.2	499	aGa/aAa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5229584	5229584	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	21	169	0	ENST00000357368.4:c.2267A>G	p.Tyr756Cys	p.Y756C	ENST00000357368	NM_002850.3	756	tAc/tGc					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149995	202149995	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	204	539	2	ENST00000358485.4:c.1436G>A	p.Trp479Ter	p.W479*	ENST00000358485	NM_001080125.1	479	tGg/tAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	105	573	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578188	7578188	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	214	688	0	ENST00000269305.4:c.661G>T	p.Glu221Ter	p.E221*	ENST00000269305	NM_001126112.2	221	Gag/Tag					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1632035	1632035	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0009827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	210	755	1	ENST00000344749.5:c.298+2T>C		p.X100_splice	ENST00000344749	NM_001136139.2	100						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	192	358	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741868	17741868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	35	71	1	ENST00000250003.3:c.539C>T	p.Ala180Val	p.A180V	ENST00000250003	NM_002478.4	180	gCg/gTg					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46532623	46532623	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	144	559	0	ENST00000262741.5:c.455T>G	p.Leu152Arg	p.L152R	ENST00000262741	NM_003629.3	152	cTt/cGt					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156830850	156830850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	82	415	0	ENST00000524377.1:c.124C>T	p.Pro42Ser	p.P42S	ENST00000524377	NM_002529.3	42	Ccc/Tcc					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198274521	198274521	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	53	607	0	ENST00000335508.6:c.877T>C	p.Trp293Arg	p.W293R	ENST00000335508	NM_012433.2	293	Tgg/Cgg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	231	434	2	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602290	10602290	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	143	291	1	ENST00000171111.5:c.1288G>T	p.Gly430Cys	p.G430C	ENST00000171111	NM_203500.1	430	Ggc/Tgc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420049	49420049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1240	186	413	0	ENST00000301067.7:c.15700G>A	p.Glu5234Lys	p.E5234K	ENST00000301067	NM_003482.3	5234	Gag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023895	27023895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	35	135	0	ENST00000324856.7:c.1001C>G	p.Ser334Trp	p.S334W	ENST00000324856	NM_006015.4	334	tCg/tGg					NEWRECORD																																																																									
ID3	0	MSKCC	GRCh37	1	23885466	23885466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1525	123	487	0	ENST00000374561.5:c.345G>T	p.Arg115Ser	p.R115S	ENST00000374561	NM_002167.4	115	agG/agT					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69631122	69631122	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	230	476	0	ENST00000334134.2:c.290T>A	p.Leu97Gln	p.L97Q	ENST00000334134	NM_005247.2	97	cTg/cAg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49443689	49443689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	184	357	0	ENST00000301067.7:c.3682G>T	p.Gly1228Cys	p.G1228C	ENST00000301067	NM_003482.3	1228	Ggc/Tgc					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73352337	73352337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1446	237	473	0	ENST00000377767.4:c.568C>T	p.Pro190Ser	p.P190S	ENST00000377767	NM_014953.3	190	Cca/Tca					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207058	1207069	+	inframe_deletion	In_Frame_Del	DEL	ACCTGATGGGGG	ACCTGATGGGGG	-			P-0009466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	116	330	0	ENST00000326873.7:c.151_162del	p.Met51_Leu54del	p.M51_L54del	ENST00000326873	NM_000455.4	49	tACCTGATGGGGGac/tac					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0004913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	236	327	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	122	181	0	ENST00000263967.3:c.1625A>C	p.Glu542Ala	p.E542A	ENST00000263967	NM_006218.2	542	gAa/gCa					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180056000	180056000	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	47	456	0	ENST00000261937.6:c.986-1G>T		p.X329_splice	ENST00000261937	NM_182925.4	329						NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16075288	16075288	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	90	305	0	ENST00000268712.3:c.264T>G	p.Ser88Arg	p.S88R	ENST00000268712	NM_006311.3	88	agT/agG					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	57	322	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89815102	89815102	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	93	352	0	ENST00000389301.3:c.3313T>A	p.Cys1105Ser	p.C1105S	ENST00000389301	NM_000135.2	1105	Tgc/Agc					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55127566	55127566	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	49	189	0	ENST00000257290.5:c.354C>G	p.Tyr118Ter	p.Y118*	ENST00000257290	NM_006206.4	118	taC/taG					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372205	55372205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	17	113	0	ENST00000297316.4:c.895G>T	p.Ala299Ser	p.A299S	ENST00000297316	NM_022454.3	299	Gcg/Tcg					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98241298	98241298	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	106	404	0	ENST00000331920.6:c.1199A>T	p.Gln400Leu	p.Q400L	ENST00000331920	NM_000264.3	400	cAg/cTg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045016	47045016	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	53	367	0	ENST00000329236.7:c.2108C>A	p.Ser703Ter	p.S703*	ENST00000329236	NM_001204466.1	703	tCa/tAa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044554	47044554	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	84	395	0	ENST00000329236.7:c.1818del	p.Arg606SerfsTer20	p.R606Sfs*20	ENST00000329236	NM_001204466.1	606	aGg/ag					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	186	356	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	78	270	0	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156851396	156851396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	55	298	1	ENST00000524377.1:c.2353G>A	p.Ala785Thr	p.A785T	ENST00000524377	NM_002529.3	785	Gcc/Acc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89462324	89462324	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	40	299	0	ENST00000336596.2:c.1796C>A	p.Pro599Gln	p.P599Q	ENST00000336596	NM_005233.5	599	cCa/cAa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2979502	2979502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	134	331	0	ENST00000396946.4:c.745C>A	p.Gln249Lys	p.Q249K	ENST00000396946	NM_032415.4	249	Cag/Aag					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128845134	128845134	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	151	363	0	ENST00000249373.3:c.628G>T	p.Val210Leu	p.V210L	ENST00000249373	NM_005631.4	210	Gtg/Ttg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18491401	18491401	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	143	301	0	ENST00000266497.5:c.1314C>G	p.Cys438Trp	p.C438W	ENST00000266497		438	tgC/tgG					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73337680	73337680	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	138	302	0	ENST00000377767.4:c.2036A>C	p.His679Pro	p.H679P	ENST00000377767	NM_014953.3	679	cAt/cCt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3817756	3817756	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	152	404	0	ENST00000262367.5:c.3215C>T	p.Ser1072Phe	p.S1072F	ENST00000262367	NM_004380.2	1072	tCt/tTt					NEWRECORD																																																																									
RAD51D	0	MSKCC	GRCh37	17	33430537	33430537	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	63	355	0	ENST00000335858.7:c.267G>T	p.Lys89Asn	p.K89N	ENST00000335858	NM_133629.2	89	aaG/aaT					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40738973	40738973	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	43	259	0	ENST00000373198.4:c.3311G>T	p.Ser1104Ile	p.S1104I	ENST00000373198	NM_133170.3	1104	aGt/aTt					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32180958	32180959	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0004714-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	94	315	0	ENST00000375023.3:c.2391_2392delinsAA	p.Phe797_Gln798delinsLeuLys	p.F797_Q798delinsLK	ENST00000375023	NM_004557.3	797	ttCCag/ttAAag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	146	340	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0006841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	41	439	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	36	307	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81941320	81941320	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	58	625	1	ENST00000359376.3:c.1498G>A	p.Asp500Asn	p.D500N	ENST00000359376	NM_002661.3	500	Gat/Aat					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39729988	39729988	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	68	379	0	ENST00000361337.2:c.1303A>G	p.Ile435Val	p.I435V	ENST00000361337	NM_003286.2	435	Atc/Gtc					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209103952	209103952	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	93	361	0	ENST00000345146.2:c.997A>G	p.Ile333Val	p.I333V	ENST00000345146	NM_005896.2	333	Att/Gtt					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169256	32169256	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	123	391	0	ENST00000375023.3:c.3777C>A	p.Cys1259Ter	p.C1259*	ENST00000375023	NM_004557.3	1259	tgC/tgA					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81334768	81334768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	175	515	0	ENST00000222390.5:c.1948G>A	p.Val650Met	p.V650M	ENST00000222390	NM_000601.4	650	Gtg/Atg					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370870	55370870	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	219	370	1	ENST00000297316.4:c.172G>T	p.Ala58Ser	p.A58S	ENST00000297316	NM_022454.3	58	Gcc/Tcc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8097835	8097835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	51	422	1	ENST00000346208.3:c.217C>T	p.Gln73Ter	p.Q73*	ENST00000346208		73	Cag/Tag					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77090304	77090304	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	311	452	0	ENST00000356341.3:c.421A>G	p.Lys141Glu	p.K141E	ENST00000356341	NM_002576.4	141	Aaa/Gaa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108160372	108160372	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	68	376	0	ENST00000278616.4:c.4280C>T	p.Ala1427Val	p.A1427V	ENST00000278616	NM_000051.3	1427	gCt/gTt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49426453	49426453	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	88	596	1	ENST00000301067.7:c.12035C>T	p.Pro4012Leu	p.P4012L	ENST00000301067	NM_003482.3	4012	cCt/cTt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434604	49434604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	58	396	0	ENST00000301067.7:c.6949G>C	p.Gly2317Arg	p.G2317R	ENST00000301067	NM_003482.3	2317	Ggt/Cgt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779226	3779226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	70	268	0	ENST00000262367.5:c.5822A>T	p.Gln1941Leu	p.Q1941L	ENST00000262367	NM_004380.2	1941	cAg/cTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578440	7578440	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	120	470	0	ENST00000269305.4:c.490A>T	p.Lys164Ter	p.K164*	ENST00000269305	NM_001126112.2	164	Aag/Tag					NEWRECORD																																																																									
RAD51D	0	MSKCC	GRCh37	17	33446604	33446604	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1088	166	490	2	ENST00000335858.7:c.29C>A	p.Pro10His	p.P10H	ENST00000335858	NM_133629.2	10	cCt/cAt					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59885864	59885864	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	181	451	1	ENST00000259008.2:c.882A>T	p.Arg294Ser	p.R294S	ENST00000259008	NM_032043.2	294	agA/agT					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56409159	56409159	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1189	84	604	0	ENST00000348428.3:c.1666G>C	p.Glu556Gln	p.E556Q	ENST00000348428	NM_006785.3	556	Gag/Cag					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944546	40944546	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	77	470	0	ENST00000373198.4:c.1956T>A	p.Tyr652Ter	p.Y652*	ENST00000373198	NM_133170.3	652	taT/taA					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41543885	41543885	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	70	534	0	ENST00000263253.7:c.2176G>T	p.Val726Leu	p.V726L	ENST00000263253	NM_001429.3	726	Gta/Tta					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922919	39922919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	93	539	0	ENST00000378444.4:c.3789G>T	p.Glu1263Asp	p.E1263D	ENST00000378444	NM_001123385.1	1263	gaG/gaT					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041261	47041261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	79	536	0	ENST00000329236.7:c.1455G>T	p.Gln485His	p.Q485H	ENST00000329236	NM_001204466.1	485	caG/caT					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411363	63411363	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	60	541	0	ENST00000330258.3:c.1804G>T	p.Glu602Ter	p.E602*	ENST00000330258	NM_152424.3	602	Gag/Tag					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100615565	100615565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	75	554	0	ENST00000308731.7:c.767A>G	p.Asp256Gly	p.D256G	ENST00000308731	NM_000061.2	256	gAt/gGt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8460533	8460533	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006642-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	81	461	0	ENST00000356435.5:c.3753del	p.Ser1252GlnfsTer16	p.S1252Qfs*16	ENST00000356435		1251	gtG/gt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	41	271	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	20	179	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
EPHA5	2044	MSKCC	GRCh37	4	66467646	66467646	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	41	252	1	ENST00000273854.3:c.623del	p.Lys208ArgfsTer60	p.K208Rfs*60	ENST00000273854	NM_004439.5	208	aAg/ag					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	47	275	0	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	64	198	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	112029177	112029177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	53	482	0	ENST00000368678.4:c.391G>A	p.Gly131Ser	p.G131S	ENST00000368678		131	Ggt/Agt					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120013	70120013	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	16	52	1	ENST00000245479.2:c.1015C>T	p.Gln339Ter	p.Q339*	ENST00000245479	NM_000346.3	339	Cag/Tag					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45368203	45368203	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	55	278	0	ENST00000262160.6:c.1399del	p.Ser467HisfsTer13	p.S467Hfs*13	ENST00000262160	NM_005901.5	467	Tca/ca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	121	310	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89478256	89478256	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	134	306	0	ENST00000336596.2:c.2075G>T	p.Ser692Ile	p.S692I	ENST00000336596	NM_005233.5	692	aGt/aTt					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41748152	41748152	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	44	253	0	ENST00000226382.2:c.617C>A	p.Pro206His	p.P206H	ENST00000226382	NM_003924.3	206	cCc/cAc					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57864204	57864204	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	110	538	0	ENST00000228682.2:c.1681C>A	p.Leu561Met	p.L561M	ENST00000228682	NM_005269.2	561	Ctg/Atg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9943818	9943818	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	36	184	0	ENST00000330684.3:c.1123G>T	p.Val375Leu	p.V375L	ENST00000330684	NM_001134407.1	375	Gtg/Ttg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578463	7578463	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	87	375	0	ENST00000269305.4:c.467G>C	p.Arg156Pro	p.R156P	ENST00000269305	NM_001126112.2	156	cGc/cCc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49446054	49446056	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-			P-0006747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	105	559	1	ENST00000301067.7:c.1410_1412del	p.Pro471del	p.P471del	ENST00000301067	NM_003482.3	470	ccACCt/cct					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	99	277	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	138	158	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
RHEB	0	MSKCC	GRCh37	7	151168674	151168674	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	183	552	1	ENST00000262187.5:c.293T>C	p.Val98Ala	p.V98A	ENST00000262187	NM_005614.3	98	gTt/gCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	167	380	0	ENST00000269305.4:c.796G>C	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Cga					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48921973	48921974	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0008442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	80	328	0	ENST00000267163.4:c.518_519del	p.Tyr173PhefsTer11	p.Y173Ffs*11	ENST00000267163	NM_000321.2	171	ctTAta/ctta					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	133	299	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	299	319	1	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15292570	15292570	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	46	241	0	ENST00000263388.2:c.2609C>T	p.Ser870Phe	p.S870F	ENST00000263388	NM_000435.2	870	tCc/tTc					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123239450	123239450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	66	319	0	ENST00000358487.5:c.2387C>T	p.Ser796Phe	p.S796F	ENST00000358487	NM_000141.4	796	tCt/tTt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11190834	11190834	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	21	124	0	ENST00000361445.4:c.5365G>A	p.Ala1789Thr	p.A1789T	ENST00000361445	NM_004958.3	1789	Gcc/Acc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120548069	120548069	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	13	28	0	ENST00000256646.2:c.298G>T	p.Asp100Tyr	p.D100Y	ENST00000256646	NM_024408.3	100	Gac/Tac					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157996	106157996	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	39	188	0	ENST00000380013.4:c.2897A>T	p.Gln966Leu	p.Q966L	ENST00000380013	NM_001127208.2	966	cAg/cTg					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131915684	131915684	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	178	366	0	ENST00000265335.6:c.682A>T	p.Thr228Ser	p.T228S	ENST00000265335		228	Aca/Tca					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149515373	149515373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	126	240	0	ENST00000261799.4:c.109C>A	p.Pro37Thr	p.P37T	ENST00000261799	NM_002609.3	37	Ccc/Acc					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94066438	94066438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	89	383	0	ENST00000369303.4:c.1321G>T	p.Ala441Ser	p.A441S	ENST00000369303	NM_004440.3	441	Gca/Tca					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2951921	2951921	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	98	219	2	ENST00000396946.4:c.3029C>A	p.Thr1010Lys	p.T1010K	ENST00000396946	NM_032415.4	1010	aCa/aAa					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64128030	64128030	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	125	312	0	ENST00000334205.4:c.428G>T	p.Gly143Val	p.G143V	ENST00000334205	NM_003942.2	143	gGt/gTt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243830	46243830	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	55	230	0	ENST00000334344.6:c.1924G>T	p.Gly642Ter	p.G642*	ENST00000334344	NM_152641.2	642	Gga/Tga					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41961408	41961408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	313	513	0	ENST00000219905.7:c.316C>T	p.Pro106Ser	p.P106S	ENST00000219905	NM_001164273.1	106	Cct/Tct					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	724551	724551	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	23	82	0	ENST00000314574.4:c.1505A>T	p.His502Leu	p.H502L	ENST00000314574	NM_005433.3	502	cAt/cTt					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39647352	39647352	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	147	402	0	ENST00000262039.4:c.2524G>T	p.Val842Phe	p.V842F	ENST00000262039	NM_002647.2	842	Gtt/Ttt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937660	76937660	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	55	464	0	ENST00000373344.5:c.3088A>T	p.Lys1030Ter	p.K1030*	ENST00000373344	NM_000489.3	1030	Aag/Tag					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243716080	243716080	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	365	326	0	ENST00000263826.5:c.1114del	p.Asp372MetfsTer10	p.D372Mfs*10	ENST00000263826	NM_005465.4	372	Gat/at					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2983875	2983875	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1547	281	359	0	ENST00000396946.4:c.655del	p.Val219SerfsTer2	p.V219Sfs*2	ENST00000396946	NM_032415.4	219	Gtc/tc					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156837917	156837918	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0009313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	73	325	1	ENST00000524377.1:c.450_451delinsAA	p.His151Asn	p.H151N	ENST00000524377	NM_002529.3	150	ctGCac/ctAAac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	15	642	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	21	360	1				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	14	401	0	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56490834	56490834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	13	445	0	ENST00000267101.3:c.2280G>A	p.Met760Ile	p.M760I	ENST00000267101	NM_001982.3	760	atG/atA					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56437575	56437575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	19	565	0	ENST00000407977.2:c.887G>A	p.Arg296His	p.R296H	ENST00000407977		296	cGt/cAt					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1612346	1612346	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	31	1057	4	ENST00000344749.5:c.1673G>A	p.Arg558His	p.R558H	ENST00000344749	NM_001136139.2	558	cGc/cAc					NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36807561	36807561	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	12	432	0	ENST00000373129.3:c.1103A>G	p.Glu368Gly	p.E368G	ENST00000373129	NM_032017.1	368	gAg/gGg					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226552821	226552821	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs182639036		P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	14	586	1	ENST00000366794.5:c.2540G>A	p.Arg847His	p.R847H	ENST00000366794	NM_001618.3	847	cGt/cAt					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47656969	47656969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	16	721	0	ENST00000233146.2:c.1165C>T	p.Arg389Ter	p.R389*	ENST00000233146	NM_000251.2	389	Cga/Tga					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630312	187630312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	21	544	2	ENST00000441802.2:c.670G>A	p.Ala224Thr	p.A224T	ENST00000441802	NM_005245.3	224	Gct/Act					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294277	1294277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	10	283	3	ENST00000310581.5:c.724G>A	p.Ala242Thr	p.A242T	ENST00000310581	NM_198253.2	242	Gct/Act					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	112041242	112041242	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	33	969	2	ENST00000368678.4:c.13C>T	p.Gln5Ter	p.Q5*	ENST00000368678		5	Caa/Taa					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508284	106508284	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	13	193	0	ENST00000359195.3:c.278C>T	p.Pro93Leu	p.P93L	ENST00000359195	NM_002649.2	93	cCg/cTg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68867262	68867262	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	19	593	0	ENST00000261769.5:c.2509G>T	p.Gly837Ter	p.G837*	ENST00000261769	NM_004360.3	837	Gga/Tga					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89805041	89805041	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	16	726	1	ENST00000389301.3:c.4336G>A	p.Ala1446Thr	p.A1446T	ENST00000389301	NM_000135.2	1446	Gct/Act					NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40456578	40456578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	20	960	2	ENST00000345506.4:c.1288C>T	p.Arg430Trp	p.R430W	ENST00000345506	NM_003152.3	430	Cgg/Tgg					NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40457680	40457680	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	22	946	2	ENST00000345506.4:c.1433C>T	p.Ala478Val	p.A478V	ENST00000345506	NM_003152.3	478	gCc/gTc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2227057	2227057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	13	223	1	ENST00000398665.3:c.4537G>A	p.Ala1513Thr	p.A1513T	ENST00000398665	NM_032482.2	1513	Gct/Act					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4117439	4117439	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202220799		P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	20	539	1	ENST00000262948.5:c.281C>T	p.Ser94Leu	p.S94L	ENST00000262948	NM_030662.3	94	tCg/tTg					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31389134	31389134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	20	671	0	ENST00000328111.2:c.2047C>T	p.Arg683Cys	p.R683C	ENST00000328111	NM_006892.3	683	Cgc/Tgc					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30070875	30070875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	15	686	1	ENST00000338641.4:c.1391C>T	p.Ala464Val	p.A464V	ENST00000338641	NM_000268.3	464	gCg/gTg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41545993	41545993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	17	777	3	ENST00000263253.7:c.2608C>T	p.Pro870Ser	p.P870S	ENST00000263253	NM_001429.3	870	Cca/Tca					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151874051	151874052	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0007931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	22	897	0	ENST00000262189.6:c.8486_8487del	p.Pro2829GlnfsTer3	p.P2829Qfs*3	ENST00000262189	NM_170606.2	2829	cCA/c					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9775804	9775804	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	166	132	0	ENST00000377346.4:c.347A>G	p.Gln116Arg	p.Q116R	ENST00000377346	NM_005026.3	116	cAg/cGg					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55161414	55161414	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	242	228	0	ENST00000257290.5:c.3245A>G	p.Asp1082Gly	p.D1082G	ENST00000257290	NM_006206.4	1082	gAc/gGc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187539348	187539348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	124	169	1	ENST00000441802.2:c.8392C>T	p.Gln2798Ter	p.Q2798*	ENST00000441802	NM_005245.3	2798	Caa/Taa					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294577	1294577	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	52	68	0	ENST00000310581.5:c.424C>G	p.Arg142Gly	p.R142G	ENST00000310581	NM_198253.2	142	Cgc/Ggc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117629990	117629990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	77	131	0	ENST00000368508.3:c.6536G>T	p.Arg2179Ile	p.R2179I	ENST00000368508	NM_002944.2	2179	aGa/aTa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711876	89711876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	10	131	0	ENST00000371953.3:c.494G>A	p.Gly165Glu	p.G165E	ENST00000371953	NM_000314.4	165	gGa/gAa					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123324023	123324023	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	100	232	0	ENST00000358487.5:c.447C>A	p.Asn149Lys	p.N149K	ENST00000358487	NM_000141.4	149	aaC/aaA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49422892	49422892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	145	165	0	ENST00000301067.7:c.14203C>T	p.Arg4735Trp	p.R4735W	ENST00000301067	NM_003482.3	4735	Cgg/Tgg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49440042	49440042	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	613	232	1	ENST00000301067.7:c.4583+1G>T		p.X1528_splice	ENST00000301067	NM_003482.3	1528						NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102869478	102869478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	350	130	0	ENST00000307046.8:c.163G>A	p.Gly55Arg	p.G55R	ENST00000307046	NM_001111285.1	55	Ggg/Agg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49027133	49027133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	137	173	0	ENST00000267163.4:c.1700C>T	p.Ser567Leu	p.S567L	ENST00000267163	NM_000321.2	567	tCa/tTa					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81971470	81971470	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	184	192	0	ENST00000359376.3:c.3160G>C	p.Glu1054Gln	p.E1054Q	ENST00000359376	NM_002661.3	1054	Gag/Cag					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16001704	16001704	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	79	182	0	ENST00000268712.3:c.2797C>T	p.Arg933Ter	p.R933*	ENST00000268712	NM_006311.3	933	Cga/Tga					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40770635	40770635	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	88	121	0	ENST00000373198.4:c.2747C>T	p.Pro916Leu	p.P916L	ENST00000373198	NM_133170.3	916	cCa/cTa					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39930889	39930889	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	191	245	0	ENST00000378444.4:c.3051+1G>T		p.X1017_splice	ENST00000378444	NM_001123385.1	1017						NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938756	76938756	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	177	202	0	ENST00000373344.5:c.1992G>T	p.Leu664Phe	p.L664F	ENST00000373344	NM_000489.3	664	ttG/ttT					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938784	76938784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	164	194	0	ENST00000373344.5:c.1964G>T	p.Arg655Ile	p.R655I	ENST00000373344	NM_000489.3	655	aGa/aTa					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610077	81610078	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0006296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	100	171	0	ENST00000298171.2:c.1675_1676delinsC	p.Gly559GlnfsTer2	p.G559Qfs*2	ENST00000298171	NM_000369.2	559	GGa/Ca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	112	455	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0005847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	44	516	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12650322	12650322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	88	609	0	ENST00000251849.4:c.524A>G	p.His175Arg	p.H175R	ENST00000251849	NM_002880.3	175	cAc/cGc					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18650571	18650571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	93	571	0	ENST00000266497.5:c.2782C>T	p.Gln928Ter	p.Q928*	ENST00000266497		928	Cag/Tag					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120244	70120244	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	98	590	0	ENST00000245479.2:c.1246C>T	p.Gln416Ter	p.Q416*	ENST00000245479	NM_000346.3	416	Caa/Taa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1223039	1223052	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGACACCAAGGA	CCAGACACCAAGGA	-			P-0005847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	72	503	0	ENST00000326873.7:c.978_991del	p.Asp327ValfsTer28	p.D327Vfs*28	ENST00000326873	NM_000455.4	326	CCAGACACCAAGGAc/c					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29559089	29559089	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0009702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	56	70	0	ENST00000358273.4:c.3198-2A>G		p.X1066_splice	ENST00000358273	NM_001042492.2	1066						NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243858938	243858938	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	83	650	0	ENST00000263826.5:c.127C>T	p.Gln43Ter	p.Q43*	ENST00000263826	NM_005465.4	43	Caa/Taa					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40740972	40740972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	112	669	0	ENST00000392038.2:c.1346C>T	p.Thr449Ile	p.T449I	ENST00000392038	NM_001626.4	449	aCa/aTa					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45656829	45656829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	71	438	0	ENST00000407780.3:c.327G>C	p.Gln109His	p.Q109H	ENST00000407780	NM_001283052.1	109	caG/caC					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30074313	30074313	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	55	295	0	ENST00000338641.4:c.1574+1G>A		p.X525_splice	ENST00000338641	NM_000268.3	525						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	70	207	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55269434	55269434	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	164	383	0	ENST00000275493.2:c.3121A>G	p.Thr1041Ala	p.T1041A	ENST00000275493	NM_005228.3	1041	Acc/Gcc					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119142524	119142524	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	122	383	2	ENST00000264033.4:c.523C>T	p.Gln175Ter	p.Q175*	ENST00000264033	NM_005188.3	175	Cag/Tag					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112555	115112555	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	286	282	0	ENST00000257566.3:c.1185del	p.Ser396ProfsTer236	p.S396Pfs*236	ENST00000257566	NM_016569.3	395	atC/at					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68849643	68849649	+	frameshift_variant	Frame_Shift_Del	DEL	TTTATGG	TTTATGG	-			P-0007100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	132	378	0	ENST00000261769.5:c.1546_1552del	p.Phe516AsnfsTer4	p.F516Nfs*4	ENST00000261769	NM_004360.3	516	TTTATGGaa/aa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0008006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	139	337	0	ENST00000371953.3:c.209+1G>A		p.X70_splice	ENST00000371953	NM_000314.4	70						NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028636	12028636	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	96	524	0	ENST00000353533.5:c.839C>A	p.Ser280Ter	p.S280*	ENST00000353533	NM_003010.3	280	tCa/tAa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	23	434	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	29	226	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49405890	49405890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	55	579	0	ENST00000418115.1:c.248G>A	p.Cys83Tyr	p.C83Y	ENST00000418115	NM_001664.2	83	tGt/tAt					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27839742	27839742	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	50	1148	0	ENST00000328488.2:c.352G>A	p.Val118Ile	p.V118I	ENST00000328488	NM_003533.2	118	Gtc/Atc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117647389	117647389	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	76	676	0	ENST00000368508.3:c.5555G>T	p.Gly1852Val	p.G1852V	ENST00000368508	NM_002944.2	1852	gGa/gTa					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36840603	36840603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	20	271	0	ENST00000358127.4:c.1130G>A	p.Arg377Gln	p.R377Q	ENST00000358127	NM_001280556.1	377	cGa/cAa					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575374	64575374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	51	253	0	ENST00000337652.1:c.658G>A	p.Val220Met	p.V220M	ENST00000337652	NM_130803.2	220	Gtg/Atg					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	463358	463358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	56	520	0	ENST00000399788.2:c.913G>A	p.Glu305Lys	p.E305K	ENST00000399788	NM_001042603.1	305	Gaa/Aaa					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121431328	121431328	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	11	184	0	ENST00000257555.6:c.532A>G	p.Thr178Ala	p.T178A	ENST00000257555		178	Acc/Gcc					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562325	21562325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	24	248	1	ENST00000382592.4:c.1594G>A	p.Asp532Asn	p.D532N	ENST00000382592	NM_014572.2	532	Gac/Aac					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56878521	56878521	+	stop_lost	Nonstop_Mutation	SNP	A	A	C			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	28	591	0	ENST00000308159.5:c.2460A>C	p.Ter820TyrextTer50	p.*820Yext*50	ENST00000308159	NM_014669.4	820	taA/taC					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72827486	72827486	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	37	819	0	ENST00000268489.5:c.9095A>C	p.Lys3032Thr	p.K3032T	ENST00000268489	NM_006885.3	3032	aAg/aCg					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022397	31022397	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	16	188	0	ENST00000375687.4:c.1882A>T	p.Arg628Ter	p.R628*	ENST00000375687	NM_015338.5	628	Aga/Tga					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123200089	123200089	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	41	567	2	ENST00000218089.9:c.2161G>T	p.Glu721Ter	p.E721*	ENST00000218089	NM_001042749.1	721	Gaa/Taa					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115874	8115875	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0005154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	33	395	0	ENST00000346208.3:c.1221_1222del	p.Pro408LeufsTer98	p.P408Lfs*98	ENST00000346208		407	tCG/t					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	299	591	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857449	9857449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	183	433	2	ENST00000330684.3:c.3952C>T	p.Arg1318Trp	p.R1318W	ENST00000330684	NM_001134407.1	1318	Cgg/Tgg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41101092	41101092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	170	380	1	ENST00000373198.4:c.1264C>T	p.Leu422Phe	p.L422F	ENST00000373198	NM_133170.3	422	Ctc/Ttc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174043	112174044	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0004690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	192	497	0	ENST00000257430.4:c.2756_2757del	p.Arg919LysfsTer4	p.R919Kfs*4	ENST00000257430	NM_000038.5	918	GAg/g					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120173	70120173	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0002461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			227	91	200	0	ENST00000245479.2:c.1177del	p.Gln393SerfsTer10	p.Q393Sfs*10	ENST00000245479	NM_000346.3	392	tCc/tc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333734	70333734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			829	100	535	0	ENST00000373644.4:c.1639C>A	p.Gln547Lys	p.Q547K	ENST00000373644	NM_030625.2	547	Cag/Aag					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56492779	56492786	+	frameshift_variant	Frame_Shift_Del	DEL	TCAAGGGG	TCAAGGGG	-			P-0002461-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			498	174	416	0	ENST00000407977.2:c.153_160del	p.Pro52AsnfsTer20	p.P52Nfs*20	ENST00000407977		51	atCCCCTTGAaa/ataa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	244	449	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178921552	178921552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	178	211	0	ENST00000263967.3:c.1034A>T	p.Asn345Ile	p.N345I	ENST00000263967	NM_006218.2	345	aAt/aTt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	174	273	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	218	323	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125785	47125785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	160	235	1	ENST00000409792.3:c.5485C>T	p.Gln1829Ter	p.Q1829*	ENST00000409792	NM_014159.6	1829	Cag/Tag					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70352373	70352373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	260	581	2	ENST00000374080.3:c.4400G>A	p.Arg1467Gln	p.R1467Q	ENST00000374080		1467	cGa/cAa					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89341585	89341585	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	58	267	0	ENST00000301030.4:c.7485del	p.Ser2496ProfsTer6	p.S2496Pfs*6	ENST00000301030	NM_001256183.1	2495	ccC/cc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52662980	52662980	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006860-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	243	268	0	ENST00000394830.3:c.1373del	p.Asn458MetfsTer17	p.N458Mfs*17	ENST00000394830	NM_018313.4	458	aAt/at					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	76	296	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0005178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	331	420	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0005178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	870	380	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37883547	37883547	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0005178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	82	387	0	ENST00000269571.5:c.3160-1G>C		p.X1054_splice	ENST00000269571		1054						NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50919051	50919051	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144111108		P-0005178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	30	634	2	ENST00000440232.2:c.2788G>A	p.Ala930Thr	p.A930T	ENST00000440232	NM_002691.3	930	Gcc/Acc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	380	331	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55963919	55963919	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs41469552		P-0009080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	372	323	2	ENST00000263923.4:c.2524C>A	p.Arg842Ser	p.R842S	ENST00000263923	NM_002253.2	842	Cgt/Agt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187509894	187509894	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	261	286	0	ENST00000441802.2:c.13619A>G	p.Tyr4540Cys	p.Y4540C	ENST00000441802	NM_005245.3	4540	tAc/tGc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29654769	29654769	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	302	295	0	ENST00000358273.4:c.5521C>T	p.Gln1841Ter	p.Q1841*	ENST00000358273	NM_001042492.2	1841	Caa/Taa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41525924	41525924	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	962	402	0	ENST00000263253.7:c.1199T>G	p.Ile400Ser	p.I400S	ENST00000263253	NM_001429.3	400	aTt/aGt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47059229	47059237	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTGCAGGC	TCTGCAGGC	-			P-0009080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	262	186	0	ENST00000409792.3:c.7432-8_7432del		p.X2478_splice	ENST00000409792	NM_014159.6	2478						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	490	308	3	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0006813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	64	215	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0006813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	120	177	1	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0006813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	27	213	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65332740	65332740	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	135	232	0	ENST00000342505.4:c.799A>G	p.Lys267Glu	p.K267E	ENST00000342505	NM_002227.2	267	Aag/Gag					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41739895	41739895	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	271	335	0	ENST00000242208.4:c.78del	p.Glu27ArgfsTer37	p.E27Rfs*37	ENST00000242208	NM_002192.2	26	tcC/tc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0003932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			173	146	330	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1325437	1325437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			348	122	434	0	ENST00000381566.1:c.238C>T	p.His80Tyr	p.H80Y	ENST00000381566		80	Cac/Tac					NEWRECORD																																																																									
IL10	0	MSKCC	GRCh37	1	206945648	206945648	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			414	140	437	0	ENST00000423557.1:c.133C>T	p.Arg45Ter	p.R45*	ENST00000423557	NM_000572.2	45	Cga/Tga					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628074	187628074	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0003932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			321	429	544	0	ENST00000441802.2:c.2908G>T	p.Gly970Ter	p.G970*	ENST00000441802	NM_005245.3	970	Gga/Tga					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6042169	6042169	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0003932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			415	207	434	0	ENST00000265849.7:c.452G>T	p.Arg151Leu	p.R151L	ENST00000265849	NM_000535.5	151	cGc/cTc					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81334725	81334725	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0003932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			803	353	552	0	ENST00000222390.5:c.1991T>A	p.Ile664Asn	p.I664N	ENST00000222390	NM_000601.4	664	aTt/aAt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151871316	151871316	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			549	226	409	0	ENST00000262189.6:c.9274A>G	p.Ile3092Val	p.I3092V	ENST00000262189	NM_170606.2	3092	Att/Gtt					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87563399	87563399	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			336	155	320	0	ENST00000277120.3:c.1787A>G	p.Asn596Ser	p.N596S	ENST00000277120		596	aAt/aGt					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133241978	133241978	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	172	472	0	ENST00000320574.5:c.2378G>C	p.Arg793Pro	p.R793P	ENST00000320574	NM_006231.2	793	cGc/cCc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765362	66765362	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			394	145	604	0	ENST00000374690.3:c.374G>T	p.Cys125Phe	p.C125F	ENST00000374690	NM_000044.3	125	tGc/tTc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76812927	76812927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			637	220	492	0	ENST00000373344.5:c.6694C>T	p.Pro2232Ser	p.P2232S	ENST00000373344	NM_000489.3	2232	Cca/Tca					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939048	76939048	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0003932-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			627	330	488	0	ENST00000373344.5:c.1700C>G	p.Ser567Ter	p.S567*	ENST00000373344	NM_000489.3	567	tCa/tGa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0001495-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			581	96	456	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001495-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			201	565	423	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153268156	153268156	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0001495-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			268	319	448	2	ENST00000281708.4:c.652C>T	p.Gln218Ter	p.Q218*	ENST00000281708	NM_033632.3	218	Caa/Taa					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118373919	118373919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0001495-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			646	679	552	0	ENST00000534358.1:c.7312G>A	p.Glu2438Lys	p.E2438K	ENST00000534358	NM_005933.3	2438	Gaa/Aaa					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9787087	9787087	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001495-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			816	264	323	2	ENST00000377346.4:c.3120delA	p.Asp1041ThrfsTer28	p.D1041Tfs*28	ENST00000377346	NM_005026.3	1040	Aaa/aa					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118373928	118373928	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0001495-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			647	710	553	0	ENST00000534358.1:c.7323delA	p.Glu2442LysfsTer14	p.E2442Kfs*14	ENST00000534358	NM_005933.3	2441	Aaa/aa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32185770	32185770	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0001495-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			584	94	359	0	ENST00000375023.3:c.1624+2T>A		p.X542_splice	ENST00000375023	NM_004557.3	542						NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99180089	99180089	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001495-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			739	66	310	0	ENST00000074304.5:c.2032T>G	p.Phe678Val	p.F678V	ENST00000074304	NM_001134224.1	678	Ttc/Gtc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8376012	8376012	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0001495-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			822	83	533	0	ENST00000356435.5:c.4585A>C	p.Thr1529Pro	p.T1529P	ENST00000356435		1529	Aca/Cca					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118352784	118352784	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0001495-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			855	66	348	0	ENST00000534358.1:c.3989A>C	p.Lys1330Thr	p.K1330T	ENST00000534358	NM_005933.3	1330	aAg/aCg					NEWRECORD																																																																									
CALR	0	MSKCC	GRCh37	19	13054594	13054594	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001495-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1842	207	809	1	ENST00000316448.5:c.1121A>G	p.Lys374Arg	p.K374R	ENST00000316448	NM_004343.3	374	aAg/aGg					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54958090	54958090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001495-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			857	108	492	0	ENST00000312783.6:c.517G>A	p.Gly173Arg	p.G173R	ENST00000312783	NM_198436.1	173	Gga/Aga					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49445110	49445112	+	frameshift_variant	Frame_Shift_Del	DEL	GCT	GCT	CC			P-0001495-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			422	39	188	0	ENST00000301067.7:c.2354_2356delAGCinsGG	p.Glu785GlyfsTer145	p.E785Gfs*145	ENST00000301067	NM_003482.3	785	gAGCca/gGGca					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0000444-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			667	40	262	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971070	21971072	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0000444-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			384	74	300	0	ENST00000304494.5:c.286_288delGTG	p.Val96del	p.V96del	ENST00000304494	NM_000077.4	96	GTG/-					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971070	21971072	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0000444-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			384	74	300	0	ENST00000304494.5:c.286_288delGTG	p.Val96del	p.V96del	ENST00000304494	NM_000077.4	96	GTG/-					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971070	21971072	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0000444-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			384	74	300	0	ENST00000304494.5:c.286_288delGTG	p.Val96del	p.V96del	ENST00000304494	NM_000077.4	96	GTG/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578455	7578460	+	inframe_deletion	In_Frame_Del	DEL	CGCGGA	CGCGGA	-			P-0000444-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			586	166	474	0	ENST00000269305.4:c.470_475delTCCGCG	p.Val157_Arg158del	p.V157_R158del	ENST00000269305	NM_001126112.2	157	gTCCGCGcc/gcc					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65335121	65335121	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000444-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			691	94	527	0	ENST00000342505.4:c.520C>T	p.Arg174Ter	p.R174*	ENST00000342505	NM_002227.2	174	Cga/Tga					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851558	134851558	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0000444-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			520	57	393	0	ENST00000398015.3:c.964G>A	p.Val322Ile	p.V322I	ENST00000398015	NM_004441.4	322	Gtc/Atc					NEWRECORD																																																																									
BCL10	0	MSKCC	GRCh37	1	85733513	85733513	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0000444-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1280	175	919	0	ENST00000370580.1:c.499T>C	p.Ser167Pro	p.S167P	ENST00000370580	NM_003921.4	167	Tct/Cct					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32165306	32165306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000444-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			799	124	597	0	ENST00000375023.3:c.4822G>A	p.Ala1608Thr	p.A1608T	ENST00000375023	NM_004557.3	1608	Gca/Aca					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135771855	135771855	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000444-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			879	89	588	0	ENST00000298552.3:c.3262C>G	p.Leu1088Val	p.L1088V	ENST00000298552	NM_001162426.1	1088	Ctg/Gtg					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999611	100999611	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000444-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1257	313	931	0	ENST00000325455.5:c.191G>T	p.Cys64Phe	p.C64F	ENST00000325455	NM_001202474.3	64	tGc/tTc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49430906	49430906	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0000444-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			441	50	274	0	ENST00000301067.7:c.10231+2T>C		p.X3411_splice	ENST00000301067	NM_003482.3	3411						NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32907344	32907344	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000444-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			884	82	409	1	ENST00000380152.3:c.1729G>A	p.Ala577Thr	p.A577T	ENST00000380152		577	Gca/Aca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	76	719	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40980850	40980850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	132	705	0	ENST00000373198.4:c.1636C>T	p.Arg546Trp	p.R546W	ENST00000373198	NM_133170.3	546	Cgg/Tgg					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	37015040	37015040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	94	626	2	ENST00000358127.4:c.364C>T	p.Arg122Trp	p.R122W	ENST00000358127	NM_001280556.1	122	Cgg/Tgg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0008855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	138	337	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	16	562	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	13	330	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0008059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	22	293	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	77	149	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	636	355	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	783	397	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11129655	11129655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	532	477	1	ENST00000344626.4:c.2461G>A	p.Glu821Lys	p.E821K	ENST00000344626	NM_003072.3	821	Gag/Aag					NEWRECORD																																																																									
HIST2H3D	0	MSKCC	GRCh37	1	149785218	149785218	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	29	29	0	ENST00000331491.1:c.19A>G	p.Thr7Ala	p.T7A	ENST00000331491	NM_001123375.2	7	Act/Gct					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193202123	193202123	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	85	165	0	ENST00000367435.3:c.1155A>T	p.Lys385Asn	p.K385N	ENST00000367435	NM_024529.4	385	aaA/aaT					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149616	202149616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	201	314	0	ENST00000358485.4:c.1057G>A	p.Glu353Lys	p.E353K	ENST00000358485	NM_001080125.1	353	Gag/Aag					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158685	26158685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	12	27	0	ENST00000289316.2:c.288G>T	p.Gln96His	p.Q96H	ENST00000289316	NM_138720.2	96	caG/caT					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30672089	30672089	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	128	424	0	ENST00000376406.3:c.4871C>G	p.Ser1624Cys	p.S1624C	ENST00000376406	NM_014641.2	1624	tCc/tGc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139413167	139413167	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	829	474	0	ENST00000277541.6:c.975C>A	p.Asn325Lys	p.N325K	ENST00000277541	NM_017617.3	325	aaC/aaA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420210	49420210	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	468	422	0	ENST00000301067.7:c.15539T>G	p.Val5180Gly	p.V5180G	ENST00000301067	NM_003482.3	5180	gTg/gGg					NEWRECORD																																																																									
SMARCD1	0	MSKCC	GRCh37	12	50480419	50480419	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	106	202	0	ENST00000394963.4:c.381G>C	p.Lys127Asn	p.K127N	ENST00000394963	NM_003076.4	127	aaG/aaC					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49037915	49037915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	343	315	1	ENST00000267163.4:c.2155C>T	p.Leu719Phe	p.L719F	ENST00000267163	NM_000321.2	719	Ctt/Ttt					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45860619	45860619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	657	612	1	ENST00000391945.4:c.1388C>T	p.Pro463Leu	p.P463L	ENST00000391945	NM_000400.3	463	cCg/cTg					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50912919	50912919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	219	636	0	ENST00000440232.2:c.2150C>T	p.Ser717Leu	p.S717L	ENST00000440232	NM_002691.3	717	tCa/tTa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087896	27087902	+	frameshift_variant	Frame_Shift_Del	DEL	CACCCAG	CACCCAG	-			P-0007015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	460	362	0	ENST00000324856.7:c.2183_2189del	p.Pro728LeufsTer12	p.P728Lfs*12	ENST00000324856	NM_006015.4	728	cCACCCAGt/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	272	504	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30325778	30325778	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	316	245	0	ENST00000322652.5:c.1976A>G	p.His659Arg	p.H659R	ENST00000322652	NM_015355.2	659	cAt/cGt					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	128	383	0	ENST00000347630.2:c.392G>C	p.Trp131Ser	p.W131S	ENST00000347630	NM_001007230.1	131	tGg/tCg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175193	112175193	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	12	207	0	ENST00000257430.4:c.3904delC	p.Leu1302CysfsTer3	p.L1302Cfs*3	ENST00000257430	NM_000038.5	1301	aCc/ac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	115	592	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0005259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	102	569	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	83	669	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30715678	30715678	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	76	572	1	ENST00000359013.4:c.1411G>T	p.Asp471Tyr	p.D471Y	ENST00000359013	NM_001024847.2	471	Gat/Tat					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28589762	28589762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	132	706	0	ENST00000241453.7:c.2618C>T	p.Ser873Leu	p.S873L	ENST00000241453	NM_004119.2	873	tCa/tTa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	453	283	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46726417	46726417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	225	302	0	ENST00000371975.4:c.496G>A	p.Glu166Lys	p.E166K	ENST00000371975	NM_003579.3	166	Gag/Aag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117658497	117658497	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	139	215	0	ENST00000368508.3:c.5086T>C	p.Tyr1696His	p.Y1696H	ENST00000368508	NM_002944.2	1696	Tac/Cac					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2946355	2946355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	352	464	0	ENST00000396946.4:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000396946	NM_032415.4	1128	Gta/Ata					NEWRECORD																																																																									
EED	0	MSKCC	GRCh37	11	85975279	85975279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	291	501	0	ENST00000263360.6:c.700G>C	p.Gly234Arg	p.G234R	ENST00000263360	NM_003797.3	234	Ggg/Cgg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112151251	112151252	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0007893-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	341	511	0	ENST00000257430.4:c.896_897del	p.Ser299CysfsTer27	p.S299Cfs*27	ENST00000257430	NM_000038.5	298	caCTct/cact					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2188	279	420	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	1598	369	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	61	409	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150001390	150001390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	50	526	0	ENST00000253339.5:c.2214G>C	p.Lys738Asn	p.K738N	ENST00000253339		738	aaG/aaC					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145739088	145739088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	69	249	0	ENST00000428558.2:c.2067G>T	p.Leu689Phe	p.L689F	ENST00000428558	NM_004260.3	689	ttG/ttT					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58145349	58145349	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	51	341	0	ENST00000257904.6:c.152T>C	p.Ile51Thr	p.I51T	ENST00000257904	NM_000075.3	51	aTc/aCc					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78931503	78931503	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	68	407	0	ENST00000306801.3:c.3450G>A	p.Trp1150Ter	p.W1150*	ENST00000306801	NM_020761.2	1150	tgG/tgA					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11188143	11188167	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGTAGACTTAGAAGCCACTGTCA	GTGGTAGACTTAGAAGCCACTGTCA	-			P-0008917-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	53	308	0	ENST00000361445.4:c.5927_5951del	p.Leu1976ArgfsTer12	p.L1976Rfs*12	ENST00000361445	NM_004958.3	1976	cTGACAGTGGCTTCTAAGTCTACCACg/cg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	158	329	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29446317	29446317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	152	512	2	ENST00000389048.3:c.3250C>T	p.Arg1084Cys	p.R1084C	ENST00000389048	NM_004304.4	1084	Cgc/Tgc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89390198	89390198	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	67	328	0	ENST00000336596.2:c.947A>C	p.Asp316Ala	p.D316A	ENST00000336596	NM_005233.5	316	gAc/gCc					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37627271	37627271	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	164	387	0	ENST00000447079.4:c.1186G>T	p.Gly396Ter	p.G396*	ENST00000447079	NM_015083.1	396	Gga/Tga					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47699374	47699374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	195	380	0	ENST00000347630.2:c.134G>T	p.Arg45Leu	p.R45L	ENST00000347630	NM_001007230.1	45	cGg/cTg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2984166	2984166	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	48	116	0	ENST00000396946.4:c.364del	p.Glu122LysfsTer10	p.E122Kfs*10	ENST00000396946	NM_032415.4	122	Gaa/aa					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71161689	71161689	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0007178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	112	301	0	ENST00000318789.4:c.280del	p.Gln94ArgfsTer8	p.Q94Rfs*8	ENST00000318789	NM_032682.5	94	Cag/ag					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604754	48604754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	100	372	1	ENST00000342988.3:c.1576G>A	p.Glu526Lys	p.E526K	ENST00000342988	NM_005359.5	526	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	57	285	0	ENST00000269305.4:c.497C>A	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tAa					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190719466	190719466	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	93	302	0	ENST00000441310.2:c.1468T>C	p.Ser490Pro	p.S490P	ENST00000441310	NM_000534.4	490	Tct/Cct					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227660891	227660891	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	90	370	0	ENST00000305123.5:c.2564T>C	p.Leu855Pro	p.L855P	ENST00000305123	NM_005544.2	855	cTg/cCg					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738807	145738807	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	29	192	0	ENST00000428558.2:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000428558	NM_004260.3	753	cGg/cAg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16202996	16202996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	37	361	0	ENST00000375759.3:c.704G>A	p.Arg235Gln	p.R235Q	ENST00000375759	NM_015001.2	235	cGg/cAg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32936831	32936831	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0008049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	294	495	0	ENST00000380152.3:c.7976+1G>A		p.X2659_splice	ENST00000380152		2659						NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68846037	68846037	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0008049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	115	672	0	ENST00000261769.5:c.1009-1G>A		p.X337_splice	ENST00000261769	NM_004360.3	337						NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72991902	72991902	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	190	1002	2	ENST00000268489.5:c.2143C>T	p.Arg715Ter	p.R715*	ENST00000268489	NM_006885.3	715	Cga/Tga					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941462	48941699	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGTACCTCACTTTTAGATAGACCTTATTTATATTGCATGCGAACTCAGTGTATATTACAAAATTAAATGTATATTATACAAAAATTCTTTAATGAAATCTGTGCCTCTGTGTGCTGAGAGATGTAATGACATGTAAAGGATAATTGTCAGTGACTTTTTTCTTTCAAGGTTGAAAATCTTTCTAAACGATACGAAGAAATTTATCTTAAAAATAAAGATCTAGATGCAAGATTATTTT	TGTACCTCACTTTTAGATAGACCTTATTTATATTGCATGCGAACTCAGTGTATATTACAAAATTAAATGTATATTATACAAAAATTCTTTAATGAAATCTGTGCCTCTGTGTGCTGAGAGATGTAATGACATGTAAAGGATAATTGTCAGTGACTTTTTTCTTTCAAGGTTGAAAATCTTTCTAAACGATACGAAGAAATTTATCTTAAAAATAAAGATCTAGATGCAAGATTATTTT	-			P-0008049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			27	39	33	0	ENST00000267163.4:c.940-166_1011del		p.X314_splice	ENST00000267163	NM_000321.2	314						NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115109975	115109978	+	frameshift_variant	Frame_Shift_Del	DEL	GCAT	GCAT	-			P-0008049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	68	342	0	ENST00000257566.3:c.1900_1903del	p.Met634AlafsTer254	p.M634Afs*254	ENST00000257566	NM_016569.3	634	ATGCgc/gc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	46	267	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	18	287	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	48	216	1	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245						NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267367	198267367	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	45	331	1	ENST00000335508.6:c.1990G>T	p.Gly664Cys	p.G664C	ENST00000335508	NM_012433.2	664	Ggt/Tgt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643549	52643549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	56	284	0	ENST00000394830.3:c.2347C>T	p.His783Tyr	p.H783Y	ENST00000394830	NM_018313.4	783	Cac/Tac					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851726	134851726	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	46	259	0	ENST00000398015.3:c.1132G>T	p.Glu378Ter	p.E378*	ENST00000398015	NM_004441.4	378	Gag/Tag					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55597504	55597504	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	35	319	2	ENST00000288135.5:c.2152A>T	p.Thr718Ser	p.T718S	ENST00000288135	NM_000222.2	718	Act/Tct					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675196	30675196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	66	371	0	ENST00000376406.3:c.3049G>A	p.Ala1017Thr	p.A1017T	ENST00000376406	NM_014641.2	1017	Gct/Act					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5126332	5126332	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	19	178	0	ENST00000381652.3:c.3178-1G>C		p.X1060_splice	ENST00000381652	NM_004972.3	1060						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597430	10597430	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	86	331	0	ENST00000171111.5:c.1773G>A	p.Trp591Ter	p.W591*	ENST00000171111	NM_203500.1	591	tgG/tgA					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411212	63411212	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009196-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	56	379	1	ENST00000330258.3:c.1955T>A	p.Leu652Ter	p.L652*	ENST00000330258	NM_152424.3	652	tTa/tAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	141	328	2	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29449926	29449926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	85	352	0	ENST00000389048.3:c.2929G>A	p.Gly977Arg	p.G977R	ENST00000389048	NM_004304.4	977	Ggg/Agg					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55144062	55144062	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	125	351	0	ENST00000257290.5:c.1892-1G>T		p.X631_splice	ENST00000257290	NM_006206.4	631						NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5069025	5069025	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	53	228	0	ENST00000381652.3:c.1330G>T	p.Glu444Ter	p.E444*	ENST00000381652	NM_004972.3	444	Gaa/Taa					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45858056	45858056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	608	449	1	ENST00000391945.4:c.1597G>A	p.Asp533Asn	p.D533N	ENST00000391945	NM_000400.3	533	Gat/Aat					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15808637	15808637	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	60	183	0	ENST00000307771.7:c.19A>G	p.Met7Val	p.M7V	ENST00000307771	NM_005089.3	7	Atg/Gtg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	344	347	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	733	491	2	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138664819	138664819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			12	44	45	0	ENST00000330315.3:c.746C>A	p.Ala249Glu	p.A249E	ENST00000330315	NM_023067.3	249	gCg/gAg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120873	94120873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	583	578	2	ENST00000369303.4:c.178G>T	p.Gly60Cys	p.G60C	ENST00000369303	NM_004440.3	60	Ggt/Tgt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187539078	187539078	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	594	543	0	ENST00000441802.2:c.8662G>T	p.Val2888Phe	p.V2888F	ENST00000441802	NM_005245.3	2888	Gtt/Ttt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	125	239	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	125	239	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46254639	46254639	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	599	464	0	ENST00000334344.6:c.4829C>G	p.Ser1610Cys	p.S1610C	ENST00000334344	NM_152641.2	1610	tCt/tGt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913233	32913233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	588	707	1	ENST00000380152.3:c.4741G>A	p.Glu1581Lys	p.E1581K	ENST00000380152		1581	Gag/Aag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9934798	9934798	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	293	572	0	ENST00000330684.3:c.1492G>T	p.Gly498Cys	p.G498C	ENST00000330684	NM_001134407.1	498	Ggt/Tgt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141502	11141502	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	402	436	0	ENST00000344626.4:c.3479G>T	p.Gly1160Val	p.G1160V	ENST00000344626	NM_003072.3	1160	gGg/gTg					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103527919	103527934	+	frameshift_variant	Frame_Shift_Del	DEL	CAGATTCTAAAGGAAA	CAGATTCTAAAGGAAA	-			P-0008261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	68	359	0	ENST00000355739.4:c.3227_3242del	p.Ser1076Ter	p.S1076*	ENST00000355739	NM_000123.3	1076	tCAGATTCTAAAGGAAAg/tg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88690578	88690578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	296	470	2	ENST00000360948.2:c.452G>A	p.Ser151Asn	p.S151N	ENST00000360948	NM_001012338.2	151	aGt/aAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	1318	484	0	ENST00000269305.4:c.880delG	p.Glu294SerfsTer51	p.E294Sfs*51	ENST00000269305	NM_001126112.2	294	Gag/ag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435871	49435871	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1783	1256	554	2	ENST00000301067.7:c.6109+1G>A		p.X2037_splice	ENST00000301067	NM_003482.3	2037						NEWRECORD																																																																									
SMARCD1	0	MSKCC	GRCh37	12	50490680	50490680	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2044	1481	497	0	ENST00000394963.4:c.1317G>C	p.Glu439Asp	p.E439D	ENST00000394963	NM_003076.4	439	gaG/gaC					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48916747	48916747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	1016	341	0	ENST00000267163.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000267163	NM_000321.2	93	Caa/Taa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88576158	88576158	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2140	822	466	1	ENST00000360948.2:c.1515G>T	p.Met505Ile	p.M505I	ENST00000360948	NM_001012338.2	505	atG/atT					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023360	31023360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1859	856	388	1	ENST00000375687.4:c.2845G>C	p.Gly949Arg	p.G949R	ENST00000375687	NM_015338.5	949	Ggt/Cgt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937764	76937764	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2806	290	538	0	ENST00000373344.5:c.2984C>T	p.Pro995Leu	p.P995L	ENST00000373344	NM_000489.3	995	cCt/cTt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30691931	30691931	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006911-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			574	65	235	0	ENST00000359013.4:c.508G>T	p.Asp170Tyr	p.D170Y	ENST00000359013	NM_001024847.2	170	Gac/Tac					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68845622	68845622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006911-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			969	128	385	0	ENST00000261769.5:c.868G>A	p.Asp290Asn	p.D290N	ENST00000261769	NM_004360.3	290	Gac/Aac					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023811	27023811	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006911-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			729	69	315	0	ENST00000324856.7:c.920delG	p.Gly307AlafsTer56	p.G307Afs*56	ENST00000324856	NM_006015.4	306	cGg/cg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	157	167	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0008999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	553	399	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
CSF1R	1436	MSKCC	GRCh37	5	149450022	149450022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	188	284	0	ENST00000286301.3:c.1195C>T	p.Arg399Ter	p.R399*	ENST00000286301	NM_005211.3	399	Cga/Tga					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99185086	99185086	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	357	529	0	ENST00000074304.5:c.2488T>G	p.Leu830Val	p.L830V	ENST00000074304	NM_001134224.1	830	Tta/Gta					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242795129	242795129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	171	244	0	ENST00000334409.5:c.80C>T	p.Ser27Phe	p.S27F	ENST00000334409	NM_005018.2	27	tCc/tTc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52649448	52649448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	263	356	0	ENST00000394830.3:c.1843G>A	p.Glu615Lys	p.E615K	ENST00000394830	NM_018313.4	615	Gag/Aag					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435903	110435903	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	70	80	0	ENST00000375856.3:c.2498T>C	p.Ile833Thr	p.I833T	ENST00000375856	NM_003749.2	833	aTc/aCc					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610125	81610125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	236	407	1	ENST00000298171.2:c.1723G>A	p.Glu575Lys	p.E575K	ENST00000298171	NM_000369.2	575	Gag/Aag					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2126502	2126502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	327	441	0	ENST00000219476.3:c.2753C>T	p.Ser918Phe	p.S918F	ENST00000219476	NM_000548.3	918	tCc/tTc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47700145	47700145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	565	335	0	ENST00000347630.2:c.28C>T	p.Pro10Ser	p.P10S	ENST00000347630	NM_001007230.1	10	Ccg/Tcg					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41748895	41748895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	352	507	0	ENST00000301178.4:c.1420C>T	p.Arg474Trp	p.R474W	ENST00000301178	NM_021913.4	474	Cgg/Tgg					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3828014	3828015	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0008999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	186	375	0	ENST00000262367.5:c.2110_2111delinsTT	p.Pro704Leu	p.P704L	ENST00000262367	NM_004380.2	704	CCa/TTa					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	120	377	0	ENST00000345146.2:c.395G>T	p.Arg132Leu	p.R132L	ENST00000345146	NM_005896.2	132	cGt/cTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	316	528	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954198	48954198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	396	607	0	ENST00000267163.4:c.1399C>T	p.Arg467Ter	p.R467*	ENST00000267163	NM_000321.2	467	Cga/Tga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	458	785	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177788	112177788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	225	386	0	ENST00000257430.4:c.6497G>A	p.Arg2166Gln	p.R2166Q	ENST00000257430	NM_000038.5	2166	cGa/cAa					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48026303	48026303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	156	522	2	ENST00000234420.5:c.1181C>T	p.Ser394Phe	p.S394F	ENST00000234420	NM_000179.2	394	tCt/tTt					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142277619	142277619	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	97	302	0	ENST00000350721.4:c.1733-1G>A		p.X578_splice	ENST00000350721	NM_001184.3	578						NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185198252	185198252	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	307	499	0	ENST00000265026.3:c.2734G>C	p.Ala912Pro	p.A912P	ENST00000265026	NM_004721.4	912	Gcc/Ccc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508082	106508082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007548-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	126	296	1	ENST00000359195.3:c.76C>T	p.Arg26Cys	p.R26C	ENST00000359195	NM_002649.2	26	Cgc/Tgc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	119	325	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36988309	36988309	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	50	127	0	ENST00000354822.5:c.344delG	p.Gly115AlafsTer10	p.G115Afs*10	ENST00000354822	NM_001079668.2	115	gGc/gc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599312	55599312	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	111	371	0	ENST00000288135.5:c.2438T>C	p.Leu813Pro	p.L813P	ENST00000288135	NM_000222.2	813	cTa/cCa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	164	359	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453146	140453146	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	61	341	0	ENST00000288602.6:c.1789C>G	p.Leu597Val	p.L597V	ENST00000288602	NM_004333.4	597	Cta/Gta					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23619228	23619228	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201657283		P-0004929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	92	564	0	ENST00000261584.4:c.3307G>A	p.Val1103Met	p.V1103M	ENST00000261584	NM_024675.3	1103	Gtg/Atg					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56411573	56411573	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	101	662	0	ENST00000348428.3:c.1757T>G	p.Leu586Arg	p.L586R	ENST00000348428	NM_006785.3	586	cTt/cGt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339931	70339931	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	159	738	0	ENST00000374080.3:c.464G>C	p.Arg155Pro	p.R155P	ENST00000374080		155	cGg/cCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578376	7578379	+	frameshift_variant	Frame_Shift_Del	DEL	CTAT	CTAT	-			P-0004929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	84	317	0	ENST00000269305.4:c.551_554delATAG	p.Asp184AlafsTer62	p.D184Afs*62	ENST00000269305	NM_001126112.2	184	gATAGc/gc					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64572579	64572615	+	protein_altering_variant	In_Frame_Del	DEL	CCCTCCTCCCATTTGCAGATGCCGTCGTAGAATCGCA	CCCTCCTCCCATTTGCAGATGCCGTCGTAGAATCGCA	T			P-0004929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	84	477	0	ENST00000337652.1:c.1256_1292delinsA	p.Leu419_Gly431delinsHis	p.L419_G431delinsH	ENST00000337652	NM_130803.2	419	cTGCGATTCTACGACGGCATCTGCAAATGGGAGGAGGGc/cAc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55604628	55604628	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs139000082		P-0005819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	288	516	0	ENST00000288135.5:c.2836C>T	p.Arg946Ter	p.R946*	ENST00000288135	NM_000222.2	946	Cga/Tga					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245132	46245132	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	227	364	0	ENST00000334344.6:c.3226A>T	p.Lys1076Ter	p.K1076*	ENST00000334344	NM_152641.2	1076	Aag/Tag					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435357	110435357	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	229	251	0	ENST00000375856.3:c.3044C>T	p.Pro1015Leu	p.P1015L	ENST00000375856	NM_003749.2	1015	cCg/cTg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221956	1221956	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	414	604	0	ENST00000326873.7:c.871G>T	p.Glu291Ter	p.E291*	ENST00000326873	NM_000455.4	291	Gag/Tag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	76	305	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	98	226	2	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481627	56481627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	198	431	0	ENST00000267101.3:c.662C>T	p.Pro221Leu	p.P221L	ENST00000267101	NM_001982.3	221	cCc/cTc					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1807896	1807896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	48	299	0	ENST00000260795.2:c.1955C>T	p.Thr652Ile	p.T652I	ENST00000260795		652	aCc/aTc					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17124931	17124940	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GCCTTCAGGA	GCCTTCAGGA	-			P-0007657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	29	246	0	ENST00000285071.4:c.782_791del	p.Leu261ArgfsTer6	p.L261Rfs*6	ENST00000285071	NM_144997.5	261	cTCCTGAAGGCg/cg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578206	7578207	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0007657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	129	414	0	ENST00000269305.4:c.642_643del	p.His214GlnfsTer7	p.H214Qfs*7	ENST00000269305	NM_001126112.2	214	caTAgt/cagt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578433	7578433	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	257	474	0	ENST00000269305.4:c.497C>A	p.Ser166Ter	p.S166*	ENST00000269305	NM_001126112.2	166	tCa/tAa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16256687	16256740	+	inframe_deletion	In_Frame_Del	DEL	GAACAGATGGCAGATATGGCCAAAATAAAACTATCTGTCTTGAATTCTGAAGAT	GAACAGATGGCAGATATGGCCAAAATAAAACTATCTGTCTTGAATTCTGAAGAT	-			P-0006206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	175	324	0	ENST00000375759.3:c.3956_4009del	p.Gln1319_Glu1336del	p.Q1319_E1336del	ENST00000375759	NM_015001.2	1318	GAACAGATGGCAGATATGGCCAAAATAAAACTATCTGTCTTGAATTCTGAAGAT/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	209	327	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	191	267	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575183	48575183	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	220	305	0	ENST00000342988.3:c.377T>C	p.Val126Ala	p.V126A	ENST00000342988	NM_005359.5	126	gTc/gCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578210	7578210	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	482	745	0	ENST00000269305.4:c.639del	p.His214IlefsTer33	p.H214Ifs*33	ENST00000269305	NM_001126112.2	213	cgA/cg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0005568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	96	266	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578448	7578448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	104	411	0	ENST00000269305.4:c.482C>A	p.Ala161Asp	p.A161D	ENST00000269305	NM_001126112.2	161	gCc/gAc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32187947	32187947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	64	491	1	ENST00000375023.3:c.1274C>T	p.Ser425Leu	p.S425L	ENST00000375023	NM_004557.3	425	tCg/tTg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591933	48591933	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	151	371	0	ENST00000342988.3:c.1096C>T	p.Gln366Ter	p.Q366*	ENST00000342988	NM_005359.5	366	Caa/Taa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220504	1220544	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGTAGGCACGTGCTAGGGGGGGCCCTGGGGCGCCCCCTCCC	GGTAGGCACGTGCTAGGGGGGGCCCTGGGGCGCCCCCTCCC	-			P-0005568-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	104	341	0	ENST00000326873.7:c.597+2_598-34del		p.X199_splice	ENST00000326873	NM_000455.4	199						NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	382	288	1	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	262	352	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	851	299	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151884912	151884915	+	frameshift_variant	Frame_Shift_Del	DEL	GAGG	GAGG	-			P-0008461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	220	331	0	ENST00000262189.6:c.4678_4681del	p.Pro1560SerfsTer2	p.P1560Sfs*2	ENST00000262189	NM_170606.2	1560	CCTCtc/tc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578382	7578382	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	183	262	0	ENST00000269305.4:c.548del	p.Ser183Ter	p.S183*	ENST00000269305	NM_001126112.2	183	tCa/ta					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993222	72993226	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGC	AGAGC	-			P-0008461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	533	683	1	ENST00000268489.5:c.819_823del	p.Leu274TrpfsTer29	p.L274Wfs*29	ENST00000268489	NM_006885.3	273	gtGCTCTat/gtat					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	409	299	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3789684	3789684	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	115	641	0	ENST00000262367.5:c.4175G>A	p.Arg1392Gln	p.R1392Q	ENST00000262367	NM_004380.2	1392	cGa/cAa					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204518619	204518619	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	621	533	0	ENST00000367182.3:c.1282G>A	p.Glu428Lys	p.E428K	ENST00000367182	NM_001278516.1	428	Gag/Aag					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139390537	139390537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	156	705	1	ENST00000277541.6:c.7654G>A	p.Glu2552Lys	p.E2552K	ENST00000277541	NM_017617.3	2552	Gag/Aag					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106158261	106158261	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	130	627	0	ENST00000380013.4:c.3165del	p.Val1056LeufsTer10	p.V1056Lfs*10	ENST00000380013	NM_001127208.2	1054	gtA/gt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0007841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	355	324	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578392	7578392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	104	244	0	ENST00000269305.4:c.538G>A	p.Glu180Lys	p.E180K	ENST00000269305	NM_001126112.2	180	Gag/Aag					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65330484	65330484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	61	369	0	ENST00000342505.4:c.1162G>A	p.Asp388Asn	p.D388N	ENST00000342505	NM_002227.2	388	Gac/Aac					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11136148	11136148	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007841-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1382	78	423	0	ENST00000344626.4:c.3132G>C	p.Lys1044Asn	p.K1044N	ENST00000344626	NM_003072.3	1044	aaG/aaC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	65	492	0	ENST00000269305.4:c.646G>C	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ctg					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61749745	61749745	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0007348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	39	418	0	ENST00000401558.2:c.301+1G>C		p.X101_splice	ENST00000401558	NM_003400.3	101						NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23641493	23641493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs71379822		P-0007348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	37	474	0	ENST00000261584.4:c.1982C>T	p.Pro661Leu	p.P661L	ENST00000261584	NM_024675.3	661	cCt/cTt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	37	231	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	205	334	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176522662	176522662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	82	538	0	ENST00000292408.4:c.1759C>T	p.Pro587Ser	p.P587S	ENST00000292408	NM_213647.1	587	Cca/Tca					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17124889	17124889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	62	444	2	ENST00000285071.4:c.833C>T	p.Pro278Leu	p.P278L	ENST00000285071	NM_144997.5	278	cCg/cTg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	48	344	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36933474	36933474	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	394	703	1	ENST00000361632.4:c.1813C>A	p.Gln605Lys	p.Q605K	ENST00000361632		605	Cag/Aag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47139534	47139534	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	89	434	0	ENST00000409792.3:c.5053T>A	p.Cys1685Ser	p.C1685S	ENST00000409792	NM_014159.6	1685	Tgc/Agc					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1279477	1279477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	67	510	0	ENST00000310581.5:c.2059C>T	p.His687Tyr	p.H687Y	ENST00000310581	NM_198253.2	687	Cac/Tac					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120377	94120377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	53	632	0	ENST00000369303.4:c.674C>T	p.Ser225Phe	p.S225F	ENST00000369303	NM_004440.3	225	tCc/tTc					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104352345	104352345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	80	427	2	ENST00000369902.3:c.461C>T	p.Thr154Ile	p.T154I	ENST00000369902	NM_016169.3	154	aCc/aTc					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100998507	100998507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	40	315	0	ENST00000325455.5:c.1295C>T	p.Ser432Phe	p.S432F	ENST00000325455	NM_001202474.3	432	tCc/tTc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108205756	108205756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	46	356	0	ENST00000278616.4:c.8071C>T	p.Arg2691Cys	p.R2691C	ENST00000278616	NM_000051.3	2691	Cgc/Tgc					NEWRECORD																																																																									
SDHD	0	MSKCC	GRCh37	11	111965605	111965605	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	15	105	0	ENST00000375549.3:c.391C>A	p.Leu131Ile	p.L131I	ENST00000375549	NM_003002.3	131	Ctt/Att					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118374532	118374532	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	64	417	1	ENST00000534358.1:c.7925C>T	p.Ser2642Phe	p.S2642F	ENST00000534358	NM_005933.3	2642	tCc/tTc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15989597	15989597	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	53	304	0	ENST00000268712.3:c.3176A>T	p.Gln1059Leu	p.Q1059L	ENST00000268712	NM_006311.3	1059	cAg/cTg					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31016158	31016158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	94	510	1	ENST00000375687.4:c.404C>T	p.Ser135Phe	p.S135F	ENST00000375687	NM_015338.5	135	tCc/tTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41420074	41420074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	62	404	0	ENST00000373198.4:c.247G>A	p.Ala83Thr	p.A83T	ENST00000373198	NM_133170.3	83	Gcc/Acc					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48650403	48650403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	111	304	0	ENST00000376670.3:c.373G>A	p.Asp125Asn	p.D125N	ENST00000376670	NM_002049.3	125	Gat/Aat					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95569869	95569870	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	85	519	0	ENST00000343455.3:c.3863_3864delinsAA	p.Arg1288Lys	p.R1288K	ENST00000343455	NM_177438.2	1288	aGG/aAA					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202141586	202141586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			535	275	480	2	ENST00000358485.4:c.874C>T	p.Arg292Trp	p.R292W	ENST00000358485	NM_001080125.1	292	Cgg/Tgg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46215271	46215271	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			469	150	445	0	ENST00000334344.6:c.705+1G>A		p.X235_splice	ENST00000334344	NM_152641.2	235						NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			184	154	215	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			184	154	215	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			184	154	215	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			340	136	252	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72076812	72076812	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			533	184	452	0	ENST00000357731.5:c.685G>A	p.Glu229Lys	p.E229K	ENST00000357731	NM_173808.2	229	Gaa/Aaa					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206648217	206648217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149591181		P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			629	251	484	1	ENST00000367120.3:c.238C>T	p.Arg80Trp	p.R80W	ENST00000367120	NM_014002.3	80	Cgg/Tgg					NEWRECORD																																																																									
IL10	0	MSKCC	GRCh37	1	206944353	206944353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			634	219	509	1	ENST00000423557.1:c.277G>A	p.Glu93Lys	p.E93K	ENST00000423557	NM_000572.2	93	Gag/Aag					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243716044	243716044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			434	163	389	1	ENST00000263826.5:c.1150G>A	p.Asp384Asn	p.D384N	ENST00000263826	NM_005465.4	384	Gat/Aat					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149979	202149979	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			636	199	449	1	ENST00000358485.4:c.1420C>T	p.Pro474Ser	p.P474S	ENST00000358485	NM_001080125.1	474	Cct/Tct					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47098937	47098937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			428	159	357	0	ENST00000409792.3:c.6337C>T	p.Arg2113Cys	p.R2113C	ENST00000409792	NM_014159.6	2113	Cgc/Tgc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164393	47164393	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			497	211	405	0	ENST00000409792.3:c.1733T>A	p.Leu578Ter	p.L578*	ENST00000409792	NM_014159.6	578	tTa/tAa					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69928499	69928499	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			528	200	424	0	ENST00000352241.4:c.319C>T	p.Pro107Ser	p.P107S	ENST00000352241	NM_198159.2	107	Ccc/Tcc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89468522	89468522	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			480	172	414	0	ENST00000336596.2:c.2056G>C	p.Glu686Gln	p.E686Q	ENST00000336596	NM_005233.5	686	Gaa/Caa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142204079	142204079	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			555	187	445	0	ENST00000350721.4:c.6124C>T	p.Leu2042Phe	p.L2042F	ENST00000350721	NM_001184.3	2042	Ctt/Ttt					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186502485	186502485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			539	201	447	0	ENST00000323963.5:c.208G>A	p.Gly70Arg	p.G70R	ENST00000323963		70	Ggg/Agg					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189526217	189526217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			606	212	517	0	ENST00000264731.3:c.481C>T	p.Pro161Ser	p.P161S	ENST00000264731	NM_003722.4	161	Cca/Tca					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176665394	176665394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			579	229	498	0	ENST00000439151.2:c.4078G>A	p.Glu1360Lys	p.E1360K	ENST00000439151	NM_022455.4	1360	Gaa/Aaa					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180040101	180040101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			578	185	486	0	ENST00000261937.6:c.3341C>T	p.Pro1114Leu	p.P1114L	ENST00000261937	NM_182925.4	1114	cCg/cTg					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005438	150005438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			622	210	512	0	ENST00000253339.5:c.787C>T	p.Pro263Ser	p.P263S	ENST00000253339		263	Cca/Tca					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2976759	2976759	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			705	263	603	1	ENST00000396946.4:c.1253G>A	p.Arg418Lys	p.R418K	ENST00000396946	NM_032415.4	418	aGg/aAg					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13935526	13935526	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			377	117	267	0	ENST00000405192.2:c.1330A>C	p.Asn444His	p.N444H	ENST00000405192	NM_001163147.1	444	Aac/Cac					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508955	106508955	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			401	147	304	0	ENST00000359195.3:c.949G>A	p.Glu317Lys	p.E317K	ENST00000359195	NM_002649.2	317	Gag/Aag					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738990	145738990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			587	258	355	0	ENST00000428558.2:c.2165C>T	p.Thr722Ile	p.T722I	ENST00000428558	NM_004260.3	722	aCc/aTc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8507300	8507300	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			541	212	508	1	ENST00000356435.5:c.1677+1G>A		p.X559_splice	ENST00000356435		559						NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	37020670	37020670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			433	161	369	1	ENST00000358127.4:c.175C>T	p.Arg59Trp	p.R59W	ENST00000358127	NM_001280556.1	59	Cgg/Tgg					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87570274	87570274	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			484	221	390	0	ENST00000277120.3:c.2014A>G	p.Ile672Val	p.I672V	ENST00000277120		672	Ata/Gta					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87636258	87636258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			676	274	589	1	ENST00000277120.3:c.2423G>A	p.Arg808Gln	p.R808Q	ENST00000277120		808	cGa/cAa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139401823	139401823	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			702	327	527	0	ENST00000277541.6:c.3577C>T	p.Gln1193Ter	p.Q1193*	ENST00000277541	NM_017617.3	1193	Cag/Tag					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139417305	139417305	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			392	155	249	0	ENST00000277541.6:c.739C>T	p.Pro247Ser	p.P247S	ENST00000277541	NM_017617.3	247	Cca/Tca					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123276835	123276835	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			693	252	555	1	ENST00000358487.5:c.1082C>T	p.Pro361Leu	p.P361L	ENST00000358487	NM_000141.4	361	cCa/cTa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444987	49444987	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			322	166	202	0	ENST00000301067.7:c.2479C>T	p.Gln827Ter	p.Q827*	ENST00000301067	NM_003482.3	827	Caa/Taa					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57864591	57864591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			871	316	740	1	ENST00000228682.2:c.2068C>T	p.Pro690Ser	p.P690S	ENST00000228682	NM_005269.2	690	Ccc/Tcc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48881519	48881519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			502	185	487	1	ENST00000267163.4:c.241G>A	p.Val81Ile	p.V81I	ENST00000267163	NM_000321.2	81	Gtt/Att					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49054172	49054172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			609	166	419	0	ENST00000267163.4:c.2752G>A	p.Asp918Asn	p.D918N	ENST00000267163	NM_000321.2	918	Gat/Aat					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91295130	91295130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			282	171	415	0	ENST00000355112.3:c.913C>T	p.Pro305Ser	p.P305S	ENST00000355112	NM_000057.2	305	Cca/Tca					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23652456	23652456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150390726		P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			516	181	462	0	ENST00000261584.4:c.23C>T	p.Pro8Leu	p.P8L	ENST00000261584	NM_024675.3	8	cCc/cTc					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56878418	56878418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			748	259	605	1	ENST00000308159.5:c.2357G>A	p.Arg786Gln	p.R786Q	ENST00000308159	NM_014669.4	786	cGa/cAa					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828822	72828822	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			843	349	845	1	ENST00000268489.5:c.7759C>T	p.Gln2587Ter	p.Q2587*	ENST00000268489	NM_006885.3	2587	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			416	491	550	0	ENST00000269305.4:c.428T>C	p.Val143Ala	p.V143A	ENST00000269305	NM_001126112.2	143	gTg/gCg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29560188	29560188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			505	175	400	0	ENST00000358273.4:c.3665C>T	p.Pro1222Leu	p.P1222L	ENST00000358273	NM_001042492.2	1222	cCt/cTt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5222868	5222868	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			361	162	219	0	ENST00000357368.4:c.2935C>G	p.Arg979Gly	p.R979G	ENST00000357368	NM_002850.3	979	Cga/Gga					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39755511	39755511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			545	225	487	0	ENST00000288319.7:c.1254G>A	p.Met418Ile	p.M418I	ENST00000288319	NM_182918.3	418	atG/atA					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47424299	47424299	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			483	208	458	0	ENST00000377045.4:c.303+1G>T		p.X101_splice	ENST00000377045	NM_001654.4	101						NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63413030	63413030	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			773	520	758	0	ENST00000330258.3:c.137C>T	p.Ser46Leu	p.S46L	ENST00000330258	NM_152424.3	46	tCa/tTa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76776372	76776372	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			645	342	534	1	ENST00000373344.5:c.7094C>G	p.Ser2365Ter	p.S2365*	ENST00000373344	NM_000489.3	2365	tCa/tGa					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100629541	100629541	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			837	258	617	0	ENST00000308731.7:c.223C>G	p.Pro75Ala	p.P75A	ENST00000308731	NM_000061.2	75	Cca/Gca					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46205268	46205283	+	frameshift_variant	Frame_Shift_Del	DEL	CCAAAGCCACAGCTTC	CCAAAGCCACAGCTTC	-			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			553	232	547	0	ENST00000334344.6:c.353_368del	p.Pro118LeufsTer92	p.P118Lfs*92	ENST00000334344	NM_152641.2	118	CCAAAGCCACAGCTTCct/ct					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577605	64577605	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			90	32	47	0	ENST00000337652.1:c.-23-1G>A		p.X8_splice	ENST00000337652	NM_130803.2	8						NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128204623	128204624	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			615	197	542	0	ENST00000341105.2:c.817_818delinsAA	p.Gly273Lys	p.G273K	ENST00000341105	NM_032638.4	273	GGa/AAa					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106555019	106555020	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			495	188	359	0	ENST00000369096.4:c.2136_2137delinsAA	p.Ala713Thr	p.A713T	ENST00000369096	NM_001198.3	712	gcGGcc/gcAAcc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139413267	139413269	+	stop_gained	Nonsense_Mutation	ONP	CAG	CAG	AAT			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			677	242	510	0	ENST00000277541.6:c.873_875delinsATT	p.Tyr291_Cys292delinsTer	p.Y291_C292delins*	ENST00000277541	NM_017617.3	291	taCTGt/taATTt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49448729	49448730	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			653	232	495	0	ENST00000301067.7:c.129_130delinsTT	p.Leu44Phe	p.L44F	ENST00000301067	NM_003482.3	43	gtCCtt/gtTTtt					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11924288	11924289	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			110	30	67	0	ENST00000353533.5:c.85_86delinsTT	p.Pro29Leu	p.P29L	ENST00000353533	NM_003010.3	29	CCa/TTa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157522193	157522194	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005619-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			532	172	335	2	ENST00000346085.5:c.4465_4466delinsTT	p.Pro1489Phe	p.P1489F	ENST00000346085	NM_020732.3	1489	CCt/TTt					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57484595	57484595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	63	152	0	ENST00000371085.3:c.679C>A	p.Gln227Lys	p.Q227K	ENST00000371085	NM_000516.4	227	Cag/Aag					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176520166	176520166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	64	224	0	ENST00000292408.4:c.1085C>T	p.Ala362Val	p.A362V	ENST00000292408	NM_213647.1	362	gCg/gTg					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41242982	41242982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	45	284	0	ENST00000357654.3:c.4164G>C	p.Gln1388His	p.Q1388H	ENST00000357654	NM_007294.3	1388	caG/caC					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	83	220	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	219	499	0	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098960	178098960	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	204	214	1	ENST00000397062.3:c.85G>T	p.Asp29Tyr	p.D29Y	ENST00000397062	NM_006164.4	29	Gat/Tat					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215645919	215645919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	146	563	0	ENST00000260947.4:c.679G>A	p.Gly227Ser	p.G227S	ENST00000260947	NM_000465.2	227	Ggt/Agt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187629441	187629441	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	184	346	0	ENST00000441802.2:c.1541A>G	p.His514Arg	p.H514R	ENST00000441802	NM_005245.3	514	cAt/cGt					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89346079	89346079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	61	101	0	ENST00000301030.4:c.6871G>A	p.Glu2291Lys	p.E2291K	ENST00000301030	NM_001256183.1	2291	Gag/Aag					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9547032	9547032	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			108	33	136	0	ENST00000353224.5:c.991-1G>A		p.X331_splice	ENST00000353224	NM_177990.2	331						NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76940087	76940087	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	64	164	0	ENST00000373344.5:c.663-2A>T		p.X221_splice	ENST00000373344	NM_000489.3	221						NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123205008	123205008	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	56	144	0	ENST00000218089.9:c.2368A>G	p.Ile790Val	p.I790V	ENST00000218089	NM_001042749.1	790	Att/Gtt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	63	363	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	65	525	1	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	71	242	0	ENST00000304494.5:c.251A>T	p.Asp84Val	p.D84V	ENST00000304494	NM_000077.4	84	gAc/gTc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	71	242	0	ENST00000304494.5:c.251A>T	p.Asp84Val	p.D84V	ENST00000304494	NM_000077.4	84	gAc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003939-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			386	80	333	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551457	150551457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003939-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1404	392	710	1	ENST00000369026.2:c.550C>T	p.Arg184Trp	p.R184W	ENST00000369026	NM_021960.4	184	Cgg/Tgg					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131973802	131973802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003939-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			644	85	289	0	ENST00000265335.6:c.3505G>A	p.Ala1169Thr	p.A1169T	ENST00000265335		1169	Gcc/Acc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	94	514	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521769	89521769	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	73	413	0	ENST00000336596.2:c.2846A>T	p.Asp949Val	p.D949V	ENST00000336596	NM_005233.5	949	gAt/gTt					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56177433	56177433	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	132	579	0	ENST00000399503.3:c.2406G>T	p.Leu802Phe	p.L802F	ENST00000399503	NM_005921.1	802	ttG/ttT					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55268090	55268090	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	80	570	1	ENST00000275493.2:c.2930G>A	p.Arg977His	p.R977H	ENST00000275493	NM_005228.3	977	cGc/cAc					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43612120	43612120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	52	808	2	ENST00000355710.3:c.2225C>T	p.Thr742Met	p.T742M	ENST00000355710	NM_020975.4	742	aCg/aTg					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007672	45007672	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	97	477	0	ENST00000558401.1:c.119C>G	p.Ser40Ter	p.S40*	ENST00000558401	NM_004048.2	40	tCa/tGa					NEWRECORD																																																																									
PDPK1	0	MSKCC	GRCh37	16	2647728	2647728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	77	716	0	ENST00000342085.4:c.1631G>A	p.Arg544Lys	p.R544K	ENST00000342085	NM_002613.4	544	aGg/aAg					NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30134499	30134499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	23	335	0	ENST00000263025.4:c.32G>T	p.Gly11Val	p.G11V	ENST00000263025	NM_002746.2	11	gGc/gTc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604655	48604655	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs28936392		P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	39	488	0	ENST00000342988.3:c.1477G>C	p.Asp493His	p.D493H	ENST00000342988	NM_005359.5	493	Gat/Cat					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56439962	56439962	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	90	632	0	ENST00000407977.2:c.630del	p.Phe210LeufsTer2	p.F210Lfs*2	ENST00000407977		210	ttT/tt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0005580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	134	462	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108117764	108117772	+	inframe_deletion	In_Frame_Del	DEL	TATAGGAAG	TATAGGAAG	-			P-0005580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	48	417	0	ENST00000278616.4:c.977_985del	p.Ile326_Ser328del	p.I326_S328del	ENST00000278616	NM_000051.3	325	caTATAGGAAGt/cat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	177	578	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	346	672	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49445404	49445404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	64	590	0	ENST00000301067.7:c.2062C>T	p.Arg688Cys	p.R688C	ENST00000301067	NM_003482.3	688	Cgc/Tgc					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73337611	73337611	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	63	632	0	ENST00000377767.4:c.2105T>C	p.Leu702Pro	p.L702P	ENST00000377767	NM_014953.3	702	cTt/cCt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72984462	72984462	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	64	875	0	ENST00000268489.5:c.3122A>C	p.Lys1041Thr	p.K1041T	ENST00000268489	NM_006885.3	1041	aAg/aCg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191540	10191540	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	258	516	2	ENST00000256474.2:c.533T>C	p.Leu178Pro	p.L178P	ENST00000256474	NM_000551.3	178	cTg/cCg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52712541	52712543	+	frameshift_variant	Frame_Shift_Del	DEL	GCT	GCT	CA			P-0006639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	68	536	0	ENST00000394830.3:c.209_211delinsTG	p.Glu70ValfsTer25	p.E70Vfs*25	ENST00000394830	NM_018313.4	70	gAGCtc/gTGtc					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134741	41134746	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCAT	GGCCAT	A			P-0006639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	248	704	0	ENST00000379561.5:c.882_887delinsT	p.Lys294AsnfsTer10	p.K294Nfs*10	ENST00000379561	NM_002015.3	294	aaATGGCCt/aaTt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27088689	27088689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	205	478	0	ENST00000324856.7:c.2298G>T	p.Gln766His	p.Q766H	ENST00000324856	NM_006015.4	766	caG/caT					NEWRECORD																																																																									
CDKN2C	0	MSKCC	GRCh37	1	51439677	51439677	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	160	315	0	ENST00000262662.1:c.242G>T	p.Gly81Val	p.G81V	ENST00000262662		81	gGt/gTt					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156841515	156841515	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	147	310	0	ENST00000524377.1:c.818G>T	p.Arg273Leu	p.R273L	ENST00000524377	NM_002529.3	273	cGg/cTg					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55984842	55984842	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	362	436	2	ENST00000263923.4:c.287A>T	p.Asn96Ile	p.N96I	ENST00000263923	NM_002253.2	96	aAt/aTt					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295307	1295307	+	upstream_gene_variant	5'Flank	SNP	G	G	C			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	171	369	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175951	112175951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	247	307	1	ENST00000257430.4:c.4660G>T	p.Glu1554Ter	p.E1554*	ENST00000257430	NM_000038.5	1554	Gaa/Taa					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149460486	149460486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	394	374	0	ENST00000286301.3:c.151G>A	p.Asp51Asn	p.D51N	ENST00000286301	NM_005211.3	51	Gat/Aat					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33289657	33289657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	270	262	0	ENST00000374542.5:c.46G>A	p.Asp16Asn	p.D16N	ENST00000374542	NM_001141970.1	16	Gat/Aat					NEWRECORD																																																																									
XRCC2	0	MSKCC	GRCh37	7	152346098	152346098	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	447	618	0	ENST00000359321.1:c.472G>T	p.Asp158Tyr	p.D158Y	ENST00000359321	NM_005431.1	158	Gac/Tac					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711916	89711916	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	168	387	0	ENST00000371953.3:c.534T>G	p.Tyr178Ter	p.Y178*	ENST00000371953	NM_000314.4	178	taT/taG					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49437211	49437211	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	346	314	2	ENST00000301067.7:c.5468G>T	p.Gly1823Val	p.G1823V	ENST00000301067	NM_003482.3	1823	gGa/gTa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914484	32914484	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	186	600	0	ENST00000380152.3:c.5992C>T	p.Gln1998Ter	p.Q1998*	ENST00000380152		1998	Caa/Taa					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134795	41134795	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	307	556	0	ENST00000379561.5:c.833A>T	p.Gln278Leu	p.Q278L	ENST00000379561	NM_002015.3	278	cAg/cTg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2121804	2121804	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	306	352	0	ENST00000219476.3:c.1966G>T	p.Glu656Ter	p.E656*	ENST00000219476	NM_000548.3	656	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	731	454	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224						NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59761488	59761488	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	587	270	0	ENST00000259008.2:c.2919C>A	p.Phe973Leu	p.F973L	ENST00000259008	NM_032043.2	973	ttC/ttA					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39584377	39584377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	515	357	0	ENST00000262039.4:c.1042G>T	p.Ala348Ser	p.A348S	ENST00000262039	NM_002647.2	348	Gcc/Tcc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5222800	5222800	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008419-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			141	261	159	0	ENST00000357368.4:c.3003G>T	p.Lys1001Asn	p.K1001N	ENST00000357368	NM_002850.3	1001	aaG/aaT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	357	324	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9775687	9775687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	345	438	0	ENST00000377346.4:c.230C>T	p.Ala77Val	p.A77V	ENST00000377346	NM_005026.3	77	gCg/gTg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175358	112175358	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	182	210	0	ENST00000257430.4:c.4067C>A	p.Ser1356Ter	p.S1356*	ENST00000257430	NM_000038.5	1356	tCa/tAa					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39911436	39911436	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	60	248	0	ENST00000378444.4:c.5194G>T	p.Glu1732Ter	p.E1732*	ENST00000378444	NM_001123385.1	1732	Gaa/Taa					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554728	63554729	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	164	184	0	ENST00000307078.5:c.10_11del	p.Ala4TyrfsTer15	p.A4Yfs*15	ENST00000307078	NM_004655.3	4	GCt/t					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138374241	138374245	+	frameshift_variant	Frame_Shift_Del	DEL	TAGTC	TAGTC	-			P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	58	362	0	ENST00000289153.2:c.3199_3203del	p.Asp1067GlnfsTer?	p.D1067Qfs*?	ENST00000289153	NM_006219.2	1067	GACTAc/c					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174520	112174533	+	frameshift_variant	Frame_Shift_Del	DEL	GTTTATACTGAGAG	GTTTATACTGAGAG	-			P-0006770-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	154	310	0	ENST00000257430.4:c.3229_3242del	p.Val1077HisfsTer2	p.V1077Hfs*2	ENST00000257430	NM_000038.5	1077	GTTTATACTGAGAGc/c					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	135	294	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	189	454	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	322	247	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	76	284	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175525	112175525	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	44	329	0	ENST00000257430.4:c.4234G>T	p.Gly1412Ter	p.G1412*	ENST00000257430	NM_000038.5	1412	Gga/Tga					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729603	41729603	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	96	564	0	ENST00000242208.4:c.926G>A	p.Arg309Gln	p.R309Q	ENST00000242208	NM_002192.2	309	cGg/cAg					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73337660	73337660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	36	312	0	ENST00000377767.4:c.2056G>A	p.Ala686Thr	p.A686T	ENST00000377767	NM_014953.3	686	Gct/Act					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15841258	15841258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	117	473	0	ENST00000307771.7:c.1342C>T	p.Arg448Cys	p.R448C	ENST00000307771	NM_005089.3	448	Cgc/Tgc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	23	418	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	14	427	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8073739	8073739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	818	589	0	ENST00000377482.5:c.920C>T	p.Ser307Leu	p.S307L	ENST00000377482	NM_018948.3	307	tCg/tTg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11303175	11303175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	473	350	0	ENST00000361445.4:c.1408C>T	p.His470Tyr	p.H470Y	ENST00000361445	NM_004958.3	470	Cat/Tat					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156841527	156841527	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	756	451	0	ENST00000524377.1:c.830C>T	p.Ser277Phe	p.S277F	ENST00000524377	NM_002529.3	277	tCt/tTt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212522526	212522526	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1646	213	435	0	ENST00000342788.4:c.1899C>A	p.Cys633Ter	p.C633*	ENST00000342788	NM_005235.2	633	tgC/tgA					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412982	49412982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	653	481	0	ENST00000418115.1:c.41G>A	p.Gly14Glu	p.G14E	ENST00000418115	NM_001664.2	14	gGa/gAa					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49940454	49940455	+	stop_gained	Nonsense_Mutation	DNP	AA	AA	TC			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1491	1090	633	0	ENST00000296474.3:c.588_589delinsGA	p.Tyr196_Phe197delinsTer	p.Y196_F197delins*	ENST00000296474	NM_002447.2	196	taTTtc/taGAtc					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70005623	70005623	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	482	349	0	ENST00000352241.4:c.955T>C	p.Phe319Leu	p.F319L	ENST00000352241	NM_198159.2	319	Ttt/Ctt					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119666195	119666195	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	326	282	0	ENST00000316626.5:c.286C>T	p.Arg96Ter	p.R96*	ENST00000316626		96	Cga/Tga					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189585721	189585721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	398	286	0	ENST00000264731.3:c.982G>A	p.Glu328Lys	p.E328K	ENST00000264731	NM_003722.4	328	Gaa/Aaa					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189611995	189611995	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	365	211	0	ENST00000264731.3:c.1747G>A	p.Asp583Asn	p.D583N	ENST00000264731	NM_003722.4	583	Gat/Aat					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153332741	153332741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	506	340	2	ENST00000281708.4:c.215C>T	p.Ser72Phe	p.S72F	ENST00000281708	NM_033632.3	72	tCc/tTc					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35873598	35873598	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	405	305	0	ENST00000303115.3:c.554G>A	p.Ser185Asn	p.S185N	ENST00000303115	NM_002185.3	185	aGc/aAc					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591043	67591043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	474	283	0	ENST00000274335.5:c.1636G>T	p.Glu546Ter	p.E546*	ENST00000274335		546	Gaa/Taa					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176696647	176696647	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	454	349	0	ENST00000439151.2:c.5348A>G	p.Asn1783Ser	p.N1783S	ENST00000439151	NM_022455.4	1783	aAc/aGc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32187419	32187419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2051	909	498	0	ENST00000375023.3:c.1460G>A	p.Gly487Glu	p.G487E	ENST00000375023	NM_004557.3	487	gGa/gAa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188847	32188847	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1705	786	411	0	ENST00000375023.3:c.707G>A	p.Gly236Glu	p.G236E	ENST00000375023	NM_004557.3	236	gGa/gAa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117641174	117641174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	825	629	1	ENST00000368508.3:c.5797G>A	p.Glu1933Lys	p.E1933K	ENST00000368508	NM_002944.2	1933	Gag/Aag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117663565	117663565	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	469	393	0	ENST00000368508.3:c.4667G>A	p.Gly1556Glu	p.G1556E	ENST00000368508	NM_002944.2	1556	gGa/gAa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117714396	117714396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	507	416	2	ENST00000368508.3:c.1253C>T	p.Ser418Leu	p.S418L	ENST00000368508	NM_002944.2	418	tCa/tTa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117715890	117715890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	449	437	0	ENST00000368508.3:c.868G>A	p.Glu290Lys	p.E290K	ENST00000368508	NM_002944.2	290	Gaa/Aaa					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152129499	152129499	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	271	118	1	ENST00000206249.3:c.452G>A	p.Arg151Lys	p.R151K	ENST00000206249	NM_000125.3	151	aGg/aAg					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162683748	162683748	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	715	383	0	ENST00000366898.1:c.221G>A	p.Trp74Ter	p.W74*	ENST00000366898	NM_004562.2	74	tGg/tAg					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13975495	13975495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	341	219	0	ENST00000405192.2:c.392G>A	p.Gly131Glu	p.G131E	ENST00000405192	NM_001163147.1	131	gGa/gAa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50450300	50450300	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	913	441	0	ENST00000331340.3:c.484C>T	p.Arg162Trp	p.R162W	ENST00000331340	NM_006060.4	162	Cgg/Tgg					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372394	55372394	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	691	400	0	ENST00000297316.4:c.1084G>A	p.Glu362Lys	p.E362K	ENST00000297316	NM_022454.3	362	Gaa/Aaa					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971016	21971016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	644	261	0	ENST00000361570.3:c.508C>T	p.Arg170Cys	p.R170C	ENST00000361570	NM_058195.3	170	Cgt/Tgt					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971016	21971016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	644	261	0	ENST00000361570.3:c.508C>T	p.Arg170Cys	p.R170C	ENST00000361570	NM_058195.3	170	Cgt/Tgt					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971017	21971018	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	642	260	0	ENST00000304494.5:c.340_341delinsTT	p.Pro114Phe	p.P114F	ENST00000304494	NM_000077.4	114	CCc/TTc					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87317295	87317295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	465	420	0	ENST00000277120.3:c.320C>T	p.Ala107Val	p.A107V	ENST00000277120		107	gCt/gTt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720658	89720658	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			20	121	102	0	ENST00000371953.3:c.809T>C	p.Met270Thr	p.M270T	ENST00000371953	NM_000314.4	270	aTg/aCg					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125514083	125514083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	919	551	1	ENST00000428830.2:c.1021G>A	p.Gly341Arg	p.G341R	ENST00000428830	NM_001114121.2	341	Ggg/Agg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246137	46246137	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	405	345	0	ENST00000334344.6:c.4231C>T	p.Gln1411Ter	p.Q1411*	ENST00000334344	NM_152641.2	1411	Caa/Taa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433373	49433373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	409	166	1	ENST00000301067.7:c.8074C>T	p.Arg2692Trp	p.R2692W	ENST00000301067	NM_003482.3	2692	Cgg/Tgg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49445370	49445370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	831	403	0	ENST00000301067.7:c.2096C>T	p.Ser699Phe	p.S699F	ENST00000301067	NM_003482.3	699	tCc/tTc					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57857557	57857557	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1128	1022	565	0	ENST00000228682.2:c.83C>T	p.Pro28Leu	p.P28L	ENST00000228682	NM_005269.2	28	cCc/cTc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133238150	133238150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	787	508	0	ENST00000320574.5:c.2827C>T	p.Pro943Ser	p.P943S	ENST00000320574	NM_006231.2	943	Cca/Tca					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32944627	32944627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	618	528	0	ENST00000380152.3:c.8420C>T	p.Ser2807Leu	p.S2807L	ENST00000380152		2807	tCg/tTg					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103515211	103515211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	422	403	0	ENST00000355739.4:c.1712C>T	p.Pro571Leu	p.P571L	ENST00000355739	NM_000123.3	571	cCg/cTg					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436921	110436921	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	389	102	0	ENST00000375856.3:c.1480G>A	p.Asp494Asn	p.D494N	ENST00000375856	NM_003749.2	494	Gac/Aac					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544745	65544747	+	missense_variant	Missense_Mutation	ONP	CCC	CCC	TTT			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	491	327	0	ENST00000358664.4:c.179_181delinsAAA	p.Arg60_Ala61delinsGlnThr	p.R60_A61delinsQT	ENST00000358664	NM_002382.4	60	cGGGcc/cAAAcc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42058882	42058882	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	786	693	0	ENST00000219905.7:c.8602C>T	p.Pro2868Ser	p.P2868S	ENST00000219905	NM_001164273.1	2868	Cct/Tct					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72831500	72831500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1233	963	670	1	ENST00000268489.5:c.5081G>A	p.Gly1694Glu	p.G1694E	ENST00000268489	NM_006885.3	1694	gGg/gAg					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81939038	81939038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	981	681	0	ENST00000359376.3:c.1393G>A	p.Asp465Asn	p.D465N	ENST00000359376	NM_002661.3	465	Gat/Aat					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81941368	81941368	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	796	525	0	ENST00000359376.3:c.1546G>A	p.Glu516Lys	p.E516K	ENST00000359376	NM_002661.3	516	Gaa/Aaa					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89348164	89348165	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1640	1301	653	1	ENST00000301030.4:c.4785_4786delinsAA	p.Glu1596Lys	p.E1596K	ENST00000301030	NM_001256183.1	1595	gaGGag/gaAAag					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89348806	89348806	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2174	1687	918	0	ENST00000301030.4:c.4144G>A	p.Glu1382Lys	p.E1382K	ENST00000301030	NM_001256183.1	1382	Gag/Aag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29592318	29592318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	1084	403	0	ENST00000358273.4:c.4796C>T	p.Ser1599Phe	p.S1599F	ENST00000358273	NM_001042492.2	1599	tCc/tTc					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56436050	56436050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	1322	392	0	ENST00000407977.2:c.1087C>T	p.Arg363Trp	p.R363W	ENST00000407977		363	Cgg/Tgg					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39575933	39575933	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	494	344	0	ENST00000262039.4:c.866A>T	p.Asn289Ile	p.N289I	ENST00000262039	NM_002647.2	289	aAt/aTt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098498	11098498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	552	287	0	ENST00000344626.4:c.1016C>T	p.Pro339Leu	p.P339L	ENST00000344626	NM_003072.3	339	cCc/cTc					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39708792	39708792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	375	327	0	ENST00000361337.2:c.403C>T	p.Pro135Ser	p.P135S	ENST00000361337	NM_003286.2	135	Cca/Tca					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40733217	40733217	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	855	315	0	ENST00000373198.4:c.3589G>A	p.Glu1197Lys	p.E1197K	ENST00000373198	NM_133170.3	1197	Gaa/Aaa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40739115	40739115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	1084	310	0	ENST00000373198.4:c.3169G>A	p.Glu1057Lys	p.E1057K	ENST00000373198	NM_133170.3	1057	Gag/Aag					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790168	40790168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	328	193	0	ENST00000373198.4:c.2563G>A	p.Gly855Arg	p.G855R	ENST00000373198	NM_133170.3	855	Ggg/Agg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306568	41306568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	1092	388	1	ENST00000373198.4:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000373198	NM_133170.3	364	cGa/cAa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306689	41306689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	1151	403	1	ENST00000373198.4:c.970G>A	p.Glu324Lys	p.E324K	ENST00000373198	NM_133170.3	324	Gaa/Aaa					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29092940	29092940	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	501	454	0	ENST00000328354.6:c.1044A>T	p.Leu348Phe	p.L348F	ENST00000328354	NM_007194.3	348	ttA/ttT					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30050689	30050689	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	418	329	0	ENST00000338641.4:c.491C>T	p.Ala164Val	p.A164V	ENST00000338641	NM_000268.3	164	gCc/gTc					NEWRECORD																																																																									
BCOR	54880	MSKCC	GRCh37	X	39933732	39933732	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1332	1057	506	0	ENST00000378444.4:c.867G>A	p.Trp289Ter	p.W289*	ENST00000378444	NM_001123385.1	289	tgG/tgA					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045732	47045734	+	missense_variant	Missense_Mutation	ONP	GAA	GAA	TAG			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	759	479	0	ENST00000329236.7:c.2379_2381delinsTAG	p.Trp793_Lys794delinsCysArg	p.W793_K794delinsCR	ENST00000329236	NM_001204466.1	793	tgGAAa/tgTAGa					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66905852	66905852	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	538	440	0	ENST00000374690.3:c.1769G>A	p.Gly590Glu	p.G590E	ENST00000374690	NM_000044.3	590	gGg/gAg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66937343	66937343	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	799	524	0	ENST00000374690.3:c.2197G>A	p.Asp733Asn	p.D733N	ENST00000374690	NM_000044.3	733	Gac/Aac					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70344077	70344077	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	805	668	1	ENST00000374080.3:c.1813C>T	p.Arg605Ter	p.R605*	ENST00000374080		605	Cga/Tga					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70344158	70344158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	525	466	0	ENST00000374080.3:c.1894C>T	p.Arg632Trp	p.R632W	ENST00000374080		632	Cgg/Tgg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76777866	76777866	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	454	392	0	ENST00000373344.5:c.6850G>A	p.Gly2284Arg	p.G2284R	ENST00000373344	NM_000489.3	2284	Gga/Aga					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937819	76937819	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	646	600	0	ENST00000373344.5:c.2929A>G	p.Thr977Ala	p.T977A	ENST00000373344	NM_000489.3	977	Act/Gct					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123164893	123164893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	833	661	0	ENST00000218089.9:c.206G>A	p.Arg69Gln	p.R69Q	ENST00000218089	NM_001042749.1	69	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0005368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	292	448	1	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18271974	18271974	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	65	152	0	ENST00000222254.8:c.577G>C	p.Glu193Gln	p.E193Q	ENST00000222254	NM_005027.3	193	Gag/Cag					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	181	343	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045030	47045030	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	154	161	0	ENST00000329236.7:c.2121+1G>A		p.X707_splice	ENST00000329236	NM_001204466.1	707						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	86	267	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0007541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	97	353	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12871182	12871182	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	25	123	1	ENST00000228872.4:c.410delC	p.Pro137ArgfsTer8	p.P137Rfs*8	ENST00000228872	NM_004064.3	137	Ccg/cg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134884864	134884864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	191	495	3	ENST00000398015.3:c.1640C>T	p.Ala547Val	p.A547V	ENST00000398015	NM_004441.4	547	gCg/gTg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68842372	68842372	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	206	593	0	ENST00000261769.5:c.433T>A	p.Ser145Thr	p.S145T	ENST00000261769	NM_004360.3	145	Tcc/Acc					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	38	318	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	54	475	0	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398220	25398220	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	85	510	0	ENST00000256078.4:c.99T>G	p.Asp33Glu	p.D33E	ENST00000256078	NM_033360.2	33	gaT/gaG					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57857796	57857796	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007676-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	115	695	0	ENST00000228682.2:c.115C>T	p.Pro39Ser	p.P39S	ENST00000228682	NM_005269.2	39	Ccc/Tcc					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106197151	106197151	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	59	569	0	ENST00000380013.4:c.5484G>C	p.Gln1828His	p.Q1828H	ENST00000380013	NM_001127208.2	1828	caG/caC					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108205828	108205828	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	56	487	0	ENST00000278616.4:c.8143C>T	p.Leu2715Phe	p.L2715F	ENST00000278616	NM_000051.3	2715	Ctt/Ttt					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23649451	23649451	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0005761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	84	596	0	ENST00000261584.4:c.49-1G>C		p.X17_splice	ENST00000261584	NM_024675.3	17						NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117870592	117870607	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	AAAATCATTTTCTTGT	AAAATCATTTTCTTGT	-			P-0005761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	79	633	0	ENST00000297338.2:c.465_480del	p.Gln156ValfsTer10	p.Q156Vfs*10	ENST00000297338	NM_006265.2	155	ttACAAGAAAATGATTTT/tt					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061225	38061238	+	protein_altering_variant	In_Frame_Del	DEL	TCGAACATGTTGCC	TCGAACATGTTGCC	GA			P-0005761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	117	557	0	ENST00000250448.2:c.751_764delinsTC	p.Gly251_Glu255delinsSer	p.G251_E255delinsS	ENST00000250448	NM_004496.3	251	GGCAACATGTTCGAg/TCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	346	291	1	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481620	56481620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	87	468	0	ENST00000267101.3:c.655T>C	p.Phe219Leu	p.F219L	ENST00000267101	NM_001982.3	219	Ttt/Ctt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55956164	55956164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	296	512	1	ENST00000263923.4:c.3151C>T	p.Arg1051Trp	p.R1051W	ENST00000263923	NM_002253.2	1051	Cgg/Tgg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120532	94120532	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	351	685	0	ENST00000369303.4:c.519G>T	p.Glu173Asp	p.E173D	ENST00000369303	NM_004440.3	173	gaG/gaT					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041440	47041440	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0008187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	263	252	0	ENST00000329236.7:c.1550A>T	p.Gln517Leu	p.Q517L	ENST00000329236	NM_001204466.1	517	cAg/cTg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573498	48573498	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0008187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	267	470	0	ENST00000342988.3:c.82delC	p.Gln28LysfsTer17	p.Q28Kfs*17	ENST00000342988	NM_005359.5	28	Caa/aa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	82	371	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9782318	9782318	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	113	474	0	ENST00000377346.4:c.2251T>A	p.Phe751Ile	p.F751I	ENST00000377346	NM_005026.3	751	Ttc/Atc					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50444447	50444447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	58	201	0	ENST00000331340.3:c.377G>T	p.Cys126Phe	p.C126F	ENST00000331340	NM_006060.4	126	tGc/tTc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	288	413	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0006253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	139	775	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577077	7577077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	138	756	0	ENST00000269305.4:c.861G>C	p.Glu287Asp	p.E287D	ENST00000269305	NM_001126112.2	287	gaG/gaC					NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36652020	36652020	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	205	574	1	ENST00000244741.5:c.142C>T	p.Arg48Ter	p.R48*	ENST00000244741	NM_000389.4	48	Cga/Tga					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151949758	151949758	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	101	716	1	ENST00000262189.6:c.1342C>T	p.Gln448Ter	p.Q448*	ENST00000262189	NM_170606.2	448	Cag/Tag					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11174452	11174452	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	154	778	2	ENST00000361445.4:c.7223G>A	p.Arg2408Gln	p.R2408Q	ENST00000361445	NM_004958.3	2408	cGa/cAa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175147	112175147	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	36	383	0	ENST00000257430.4:c.3856G>C	p.Glu1286Gln	p.E1286Q	ENST00000257430	NM_000038.5	1286	Gaa/Caa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108203493	108203493	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140263969		P-0006253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	61	568	0	ENST00000278616.4:c.7793G>A	p.Arg2598Gln	p.R2598Q	ENST00000278616	NM_000051.3	2598	cGa/cAa					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21549137	21549137	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	154	830	0	ENST00000382592.4:c.3139G>C	p.Asp1047His	p.D1047H	ENST00000382592	NM_014572.2	1047	Gat/Cat					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039501	49039501	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0006253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	92	664	0	ENST00000267163.4:c.2486C>G	p.Ser829Ter	p.S829*	ENST00000267163	NM_000321.2	829	tCa/tGa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2137898	2137898	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	133	721	0	ENST00000219476.3:c.5024C>G	p.Pro1675Arg	p.P1675R	ENST00000219476	NM_000548.3	1675	cCg/cGg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	75	426	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2959007	2959007	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0006415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	93	469	0	ENST00000396946.4:c.2509C>T	p.Arg837Ter	p.R837*	ENST00000396946	NM_032415.4	837	Cga/Tga					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8404589	8404589	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	142	605	0	ENST00000356435.5:c.4158C>G	p.Tyr1386Ter	p.Y1386*	ENST00000356435		1386	taC/taG					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	61	366	0	ENST00000371953.3:c.380G>A	p.Gly127Glu	p.G127E	ENST00000371953	NM_000314.4	127	gGa/gAa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584802	48584805	+	frameshift_variant	Frame_Shift_Del	DEL	ATGC	ATGC	GG			P-0006415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	94	588	0	ENST00000342988.3:c.880_883delinsGG	p.Met294GlyfsTer13	p.M294Gfs*13	ENST00000342988	NM_005359.5	294	ATGCcg/GGcg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	59	284	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190719711	190719711	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	38	357	0	ENST00000441310.2:c.1713C>G	p.Ile571Met	p.I571M	ENST00000441310	NM_000534.4	571	atC/atG					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27839850	27839850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	106	745	1	ENST00000328488.2:c.244G>A	p.Asp82Asn	p.D82N	ENST00000328488	NM_003533.2	82	Gat/Aat					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372109	55372109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	17	102	0	ENST00000297316.4:c.799G>A	p.Ala267Thr	p.A267T	ENST00000297316	NM_022454.3	267	Gcc/Acc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2131787	2131787	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	65	198	0	ENST00000219476.3:c.3802C>G	p.Arg1268Gly	p.R1268G	ENST00000219476	NM_000548.3	1268	Cgc/Ggc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045736	47045736	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007622-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	62	165	0	ENST00000329236.7:c.2383G>C	p.Glu795Gln	p.E795Q	ENST00000329236	NM_001204466.1	795	Gag/Cag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	70	687	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27097630	27097630	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	51	576	0	ENST00000324856.7:c.3219G>A	p.Trp1073Ter	p.W1073*	ENST00000324856	NM_006015.4	1073	tgG/tgA					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	420160	420160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	42	502	1	ENST00000399788.2:c.3107G>A	p.Arg1036His	p.R1036H	ENST00000399788	NM_001042603.1	1036	cGt/cAt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56493467	56493467	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	55	546	0	ENST00000267101.3:c.2875A>G	p.Lys959Glu	p.K959E	ENST00000267101	NM_001982.3	959	Aaa/Gaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008052-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	242	573	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40730915	40730915	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008052-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	141	260	0	ENST00000373198.4:c.3620G>A	p.Arg1207His	p.R1207H	ENST00000373198	NM_133170.3	1207	cGt/cAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0008747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	431	749	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380277	25380277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	289	547	0	ENST00000256078.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000256078	NM_033360.2	61	Caa/Aaa					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508826	106508826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	157	436	1	ENST00000359195.3:c.820G>A	p.Val274Ile	p.V274I	ENST00000359195	NM_002649.2	274	Gtc/Atc					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32456881	32456881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	62	136	0	ENST00000332351.3:c.11C>T	p.Pro4Leu	p.P4L	ENST00000332351	NM_024426.4	4	cCg/cTg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	119	346	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0007162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	115	519	2	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	235	295	0	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048131	180048131	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	48	368	1	ENST00000261937.6:c.2142C>A	p.Asp714Glu	p.D714E	ENST00000261937	NM_182925.4	714	gaC/gaA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	260	378	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2979435	2979435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007162-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	131	409	0	ENST00000396946.4:c.812G>A	p.Arg271Gln	p.R271Q	ENST00000396946	NM_032415.4	271	cGg/cAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	43	425	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1806099	1806099	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	736	551	0	ENST00000260795.2:c.1118A>G	p.Tyr373Cys	p.Y373C	ENST00000260795		373	tAt/tGt					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21549464	21549464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	150	193	0	ENST00000382592.4:c.2812G>A	p.Val938Met	p.V938M	ENST00000382592	NM_014572.2	938	Gtg/Atg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44929602	44929602	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0007224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	245	426	0	ENST00000377967.4:c.2702G>C	p.Arg901Thr	p.R901T	ENST00000377967	NM_021140.2	901	aGg/aCg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123197903	123197903	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0007224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	269	510	1	ENST00000218089.9:c.2025+2T>A		p.X675_splice	ENST00000218089	NM_001042749.1	675						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	34	538	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944512	40944512	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	16	494	0	ENST00000373198.4:c.1990T>G	p.Phe664Val	p.F664V	ENST00000373198	NM_133170.3	664	Ttt/Gtt					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72748042	72748042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	30	853	0	ENST00000357731.5:c.136G>A	p.Asp46Asn	p.D46N	ENST00000357731	NM_173808.2	46	Gac/Aac					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29443618	29443618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200585833		P-0009637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	31	465	1	ENST00000389048.3:c.3599C>T	p.Ala1200Val	p.A1200V	ENST00000389048	NM_004304.4	1200	gCg/gTg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183809	10183809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	29	239	0	ENST00000256474.2:c.278G>T	p.Gly93Val	p.G93V	ENST00000256474	NM_000551.3	93	gGc/gTc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47143042	47143042	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	38	501	0	ENST00000409792.3:c.4921A>T	p.Thr1641Ser	p.T1641S	ENST00000409792	NM_014159.6	1641	Act/Tct					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440305	52440324	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCAGCACATGCAGCCTGG	CTTCAGCACATGCAGCCTGG	-			P-0006334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	32	463	0	ENST00000460680.1:c.728_747del	p.Ala243GlyfsTer34	p.A243Gfs*34	ENST00000460680	NM_004656.3	243	gCCAGGCTGCATGTGCTGAAG/g					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	194	291	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	69	154	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591888	48591888	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	258	472	0	ENST00000342988.3:c.1051G>T	p.Asp351Tyr	p.D351Y	ENST00000342988	NM_005359.5	351	Gat/Tat					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	133	341	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178096319	178096319	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	246	337	0	ENST00000397062.3:c.1012G>T	p.Glu338Ter	p.E338*	ENST00000397062	NM_006164.4	338	Gaa/Taa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55155022	55155022	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	98	363	0	ENST00000257290.5:c.2731A>T	p.Ser911Cys	p.S911C	ENST00000257290	NM_006206.4	911	Agt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176023	112176024	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0007405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	145	255	0	ENST00000257430.4:c.4733_4734del	p.Cys1578TyrfsTer12	p.C1578Yfs*12	ENST00000257430	NM_000038.5	1578	TGt/t					NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36824418	36824418	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	61	348	0	ENST00000373129.3:c.118C>G	p.Arg40Gly	p.R40G	ENST00000373129	NM_032017.1	40	Cgt/Ggt					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36941125	36941125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	165	599	1	ENST00000361632.4:c.214G>A	p.Gly72Arg	p.G72R	ENST00000361632		72	Ggg/Agg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29754791	29754791	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	97	351	0	ENST00000389048.3:c.1144G>A	p.Gly382Arg	p.G382R	ENST00000389048	NM_004304.4	382	Ggg/Agg					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99162507	99162507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	125	400	0	ENST00000074304.5:c.1025G>A	p.Arg342Lys	p.R342K	ENST00000074304	NM_001134224.1	342	aGg/aAg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212578332	212578332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	91	358	0	ENST00000342788.4:c.925C>T	p.Pro309Ser	p.P309S	ENST00000342788	NM_005235.2	309	Cct/Tct					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220440145	220440145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1189	168	567	1	ENST00000243786.2:c.998G>A	p.Gly333Glu	p.G333E	ENST00000243786	NM_002191.3	333	gGg/gAg					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30732969	30732969	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	108	287	0	ENST00000359013.4:c.1657C>T	p.Arg553Cys	p.R553C	ENST00000359013	NM_001024847.2	553	Cgt/Tgt					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1807357	1807357	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	133	439	0	ENST00000260795.2:c.1606A>G	p.Lys536Glu	p.K536E	ENST00000260795		536	Aaa/Gaa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106156475	106156475	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	150	439	1	ENST00000380013.4:c.1376C>T	p.Pro459Leu	p.P459L	ENST00000380013	NM_001127208.2	459	cCt/cTt					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106196303	106196303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	50	378	1	ENST00000380013.4:c.4636C>T	p.Gln1546Ter	p.Q1546*	ENST00000380013	NM_001127208.2	1546	Cag/Tag					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1279500	1279500	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	243	412	0	ENST00000310581.5:c.2036C>T	p.Ser679Phe	p.S679F	ENST00000310581	NM_198253.2	679	tCt/tTt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	77	221	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57751556	57751556	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	65	364	1	ENST00000274289.3:c.1435C>A	p.Leu479Ile	p.L479I	ENST00000274289	NM_006622.3	479	Ctt/Att					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287216	33287217	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	49	406	1	ENST00000374542.5:c.1880_1881delinsTT	p.Pro627Leu	p.P627L	ENST00000374542	NM_001141970.1	627	cCC/cTT					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287309	33287310	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	110	388	0	ENST00000374542.5:c.1787_1788delinsTT	p.Pro596Leu	p.P596L	ENST00000374542	NM_001141970.1	596	cCC/cTT					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117622266	117622266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	127	475	0	ENST00000368508.3:c.6604C>T	p.Pro2202Ser	p.P2202S	ENST00000368508	NM_002944.2	2202	Ccc/Tcc					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13946092	13946092	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	126	296	0	ENST00000405192.2:c.1004G>A	p.Gly335Asp	p.G335D	ENST00000405192	NM_001163147.1	335	gGt/gAt					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729949	41729949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1467	210	635	0	ENST00000242208.4:c.580G>A	p.Glu194Lys	p.E194K	ENST00000242208	NM_002192.2	194	Gaa/Aaa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55229300	55229300	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	125	477	0	ENST00000275493.2:c.1607T>A	p.Val536Glu	p.V536E	ENST00000275493	NM_005228.3	536	gTg/gAg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106522569	106522569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	105	383	0	ENST00000359195.3:c.2546G>A	p.Arg849Gln	p.R849Q	ENST00000359195	NM_002649.2	849	cGa/cAa					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148529748	148529748	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	61	326	0	ENST00000320356.2:c.341C>T	p.Ser114Phe	p.S114F	ENST00000320356	NM_004456.4	114	tCt/tTt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8471012	8471012	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	108	425	0	ENST00000356435.5:c.3487G>A	p.Glu1163Lys	p.E1163K	ENST00000356435		1163	Gaa/Aaa					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	190	418	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974684	21974684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	190	418	0	ENST00000304494.5:c.143C>T	p.Pro48Leu	p.P48L	ENST00000304494	NM_000077.4	48	cCg/cTg					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93629456	93629456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	57	365	0	ENST00000375746.1:c.890C>T	p.Ser297Phe	p.S297F	ENST00000375746	NM_001174167.1	297	tCc/tTc					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97897654	97897654	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143181565		P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	196	436	0	ENST00000289081.3:c.817G>A	p.Glu273Lys	p.E273K	ENST00000289081	NM_000136.2	273	Gaa/Aaa					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759415	133759416	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	225	558	1	ENST00000318560.5:c.1738_1739delinsTT	p.Pro580Leu	p.P580L	ENST00000318560	NM_005157.4	580	CCg/TTg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139413088	139413088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	192	456	0	ENST00000277541.6:c.1054G>A	p.Asp352Asn	p.D352N	ENST00000277541	NM_017617.3	352	Gac/Aac					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70332628	70332628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	79	394	0	ENST00000373644.4:c.533C>T	p.Pro178Leu	p.P178L	ENST00000373644	NM_030625.2	178	cCc/cTc					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575026	64575026	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	80	243	0	ENST00000337652.1:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000337652	NM_130803.2	266	Cag/Tag					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94169019	94169019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	124	368	0	ENST00000323929.3:c.1973C>T	p.Thr658Ile	p.T658I	ENST00000323929	NM_005591.3	658	aCc/aTc					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102195555	102195556	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1487	193	683	3	ENST00000263464.3:c.315_316delinsAA	p.Glu106Lys	p.E106K	ENST00000263464	NM_001165.4	105	ttGGaa/ttAAaa					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118343451	118343451	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	114	276	0	ENST00000534358.1:c.1577G>A	p.Arg526Lys	p.R526K	ENST00000534358	NM_005933.3	526	aGg/aAg					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119145638	119145638	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	138	387	0	ENST00000264033.4:c.844C>T	p.Gln282Ter	p.Q282*	ENST00000264033	NM_005188.3	282	Cag/Tag					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119146837	119146837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	87	367	0	ENST00000264033.4:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000264033	NM_005188.3	334	Gaa/Aaa					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119170253	119170253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	116	361	1	ENST00000264033.4:c.2483C>T	p.Pro828Leu	p.P828L	ENST00000264033	NM_005188.3	828	cCg/cTg					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119170256	119170256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	116	358	0	ENST00000264033.4:c.2486G>A	p.Arg829Gln	p.R829Q	ENST00000264033	NM_005188.3	829	cGg/cAg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425412	49425412	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	60	453	0	ENST00000301067.7:c.13076C>G	p.Ser4359Ter	p.S4359*	ENST00000301067	NM_003482.3	4359	tCa/tGa					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56474138	56474139	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	58	351	0	ENST00000267101.3:c.54_55delinsAA	p.Gly19Ser	p.G19S	ENST00000267101	NM_001982.3	18	cgGGgc/cgAAgc					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69233073	69233073	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	51	325	1	ENST00000462284.1:c.938C>T	p.Ser313Leu	p.S313L	ENST00000462284	NM_002392.5	313	tCa/tTa					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110434481	110434481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	54	265	0	ENST00000375856.3:c.3920G>A	p.Gly1307Glu	p.G1307E	ENST00000375856	NM_003749.2	1307	gGg/gAg					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610644	81610644	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1265	74	493	0	ENST00000298171.2:c.2242A>G	p.Thr748Ala	p.T748A	ENST00000298171	NM_000369.2	748	Acc/Gcc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772227	68772227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	146	442	1	ENST00000261769.5:c.76G>A	p.Glu26Lys	p.E26K	ENST00000261769	NM_004360.3	26	Gag/Aag					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81957181	81957182	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	117	477	0	ENST00000359376.3:c.2399_2400delinsTT	p.Ser800Phe	p.S800F	ENST00000359376	NM_002661.3	800	tCC/tTT					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89341317	89341317	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	44	174	0	ENST00000301030.4:c.7618C>T	p.Arg2540Trp	p.R2540W	ENST00000301030	NM_001256183.1	2540	Cgg/Tgg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89805693	89805693	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149775657		P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	133	402	1	ENST00000389301.3:c.4015C>T	p.Leu1339Phe	p.L1339F	ENST00000389301	NM_000135.2	1339	Ctc/Ttc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578478	7578479	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	211	352	0	ENST00000269305.4:c.451_452delinsTT	p.Pro151Phe	p.P151F	ENST00000269305	NM_001126112.2	151	CCc/TTc					NEWRECORD																																																																									
AURKB	0	MSKCC	GRCh37	17	8110596	8110596	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	143	372	0	ENST00000585124.1:c.296G>A	p.Ser99Asn	p.S99N	ENST00000585124	NM_004217.3	99	aGc/aAc					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30325889	30325889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	112	485	0	ENST00000322652.5:c.2087C>T	p.Pro696Leu	p.P696L	ENST00000322652	NM_015355.2	696	cCt/cTt					NEWRECORD																																																																									
HOXB13	0	MSKCC	GRCh37	17	46805372	46805372	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	154	571	0	ENST00000290295.7:c.584G>A	p.Trp195Ter	p.W195*	ENST00000290295	NM_006361.5	195	tGg/tAg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117630	70117630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	126	384	3	ENST00000245479.2:c.98C>T	p.Ser33Leu	p.S33L	ENST00000245479	NM_000346.3	33	tCg/tTg					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78857751	78857752	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	101	281	0	ENST00000306801.3:c.1821_1822delinsTT	p.Leu608Phe	p.L608F	ENST00000306801	NM_020761.2	607	ctCCtc/ctTTtc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2217876	2217876	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	117	394	0	ENST00000398665.3:c.2650C>T	p.Pro884Ser	p.P884S	ENST00000398665	NM_032482.2	884	Ccc/Tcc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5208356	5208356	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	129	444	0	ENST00000357368.4:c.5534C>T	p.Pro1845Leu	p.P1845L	ENST00000357368	NM_002850.3	1845	cCg/cTg					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7117187	7117188	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	69	446	1	ENST00000302850.5:c.4028_4029delinsAA	p.Arg1343Gln	p.R1343Q	ENST00000302850	NM_000208.2	1343	cGG/cAA					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098365	11098365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	68	394	0	ENST00000344626.4:c.883C>T	p.Pro295Ser	p.P295S	ENST00000344626	NM_003072.3	295	Ccc/Tcc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15291900	15291900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	79	451	0	ENST00000263388.2:c.2866G>A	p.Gly956Arg	p.G956R	ENST00000263388	NM_000435.2	956	Gga/Aga					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42794481	42794481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	129	515	0	ENST00000575354.2:c.1561C>T	p.Pro521Ser	p.P521S	ENST00000575354	NM_015125.3	521	Cct/Tct					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42797380	42797380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	60	395	0	ENST00000575354.2:c.3742C>T	p.Pro1248Ser	p.P1248S	ENST00000575354	NM_015125.3	1248	Cca/Tca					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41101129	41101130	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	67	280	1	ENST00000373198.4:c.1226_1227delinsTT	p.Pro409Leu	p.P409L	ENST00000373198	NM_133170.3	409	cCC/cTT					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100608911	100608911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	146	266	0	ENST00000308731.7:c.1697C>A	p.Pro566Gln	p.P566Q	ENST00000308731	NM_000061.2	566	cCg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1283	318	751	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	370	375	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	1042	533	1	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120360	94120360	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	603	891	2	ENST00000369303.4:c.691C>T	p.Arg231Ter	p.R231*	ENST00000369303	NM_004440.3	231	Cga/Tga					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371782	55371782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	41	76	1	ENST00000297316.4:c.472G>A	p.Gly158Ser	p.G158S	ENST00000297316	NM_022454.3	158	Ggc/Agc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112157640	112157655	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAAACTTTCATTTG	ATGAAACTTTCATTTG	-			P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	374	601	1	ENST00000257430.4:c.1365_1380del	p.Leu456SerfsTer6	p.L456Sfs*6	ENST00000257430	NM_000038.5	454	ATGAAACTTTCATTTGat/at					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175751	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	A			P-0009954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	151	477	0	ENST00000257430.4:c.4460_4461delinsA	p.Thr1487AsnfsTer20	p.T1487Nfs*20	ENST00000257430	NM_000038.5	1487	aCT/aA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	400	597	2	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc					NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10183788	10183788	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882034		P-0006539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	217	353	0	ENST00000256474.2:c.257C>G	p.Pro86Arg	p.P86R	ENST00000256474	NM_000551.3	86	cCc/cGc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52712520	52712520	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	244	593	1	ENST00000394830.3:c.232C>T	p.Arg78Ter	p.R78*	ENST00000394830	NM_018313.4	78	Cga/Tga					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135797297	135797297	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	171	527	0	ENST00000298552.3:c.572T>A	p.Leu191His	p.L191H	ENST00000298552	NM_001162426.1	191	cTt/cAt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46285879	46285879	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0006539-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	161	452	0	ENST00000334344.6:c.5147A>C	p.Lys1716Thr	p.K1716T	ENST00000334344	NM_152641.2	1716	aAg/aCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	689	421	1	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86564308	86564308	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	48	354	0	ENST00000274376.6:c.40G>T	p.Val14Leu	p.V14L	ENST00000274376	NM_002890.2	14	Gta/Tta					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060604	38060604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3265	682	1009	1	ENST00000250448.2:c.1385G>C	p.Gly462Ala	p.G462A	ENST00000250448	NM_004496.3	462	gGt/gCt					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7267688	7267688	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140762552		P-0008666-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	66	388	0	ENST00000302850.5:c.320C>T	p.Thr107Met	p.T107M	ENST00000302850	NM_000208.2	107	aCg/aTg					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39755470	39755470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	210	437	3	ENST00000288319.7:c.1295C>T	p.Ala432Val	p.A432V	ENST00000288319	NM_182918.3	432	gCg/gTg					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618691	37618692	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0009556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	150	577	1	ENST00000447079.4:c.367_368del	p.Leu123LysfsTer3	p.L123Kfs*3	ENST00000447079	NM_015083.1	123	CTa/a					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618979	37618982	+	stop_gained	Nonsense_Mutation	ONP	AGAT	AGAT	TGAG			P-0009556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	82	316	0	ENST00000447079.4:c.655_658delinsTGAG	p.Arg219_Ser220delinsTer	p.R219_S220delins*	ENST00000447079	NM_015083.1	219	AGATcc/TGAGcc					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	145	455	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162206806	162206806	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0005785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	154	459	0	ENST00000366898.1:c.869T>A	p.Val290Glu	p.V290E	ENST00000366898	NM_004562.2	290	gTg/gAg					NEWRECORD																																																																									
EGFL7	0	MSKCC	GRCh37	9	139564084	139564084	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	190	623	2	ENST00000308874.7:c.224G>A	p.Arg75His	p.R75H	ENST00000308874		75	cGc/cAc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115943	8115964	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGACCACACCACCCCTCCAG	TTGGACCACACCACCCCTCCAG	-			P-0005785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	166	316	0	ENST00000346208.3:c.1289_1310del	p.Phe430SerfsTer38	p.F430Sfs*38	ENST00000346208		430	tTTGGACCACACCACCCCTCCAGc/tc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	137	340	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579415	7579415	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	75	305	0	ENST00000269305.4:c.272G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tGg/tAg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	160	235	0	ENST00000304494.5:c.95T>A	p.Leu32Gln	p.L32Q	ENST00000304494	NM_000077.4	32	cTg/cAg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974732	21974732	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	160	235	0	ENST00000304494.5:c.95T>A	p.Leu32Gln	p.L32Q	ENST00000304494	NM_000077.4	32	cTg/cAg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142254979	142254979	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	43	223	0	ENST00000350721.4:c.3790A>T	p.Ile1264Leu	p.I1264L	ENST00000350721	NM_001184.3	1264	Ata/Tta					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	127	286	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430425	181430425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1313	145	550	0	ENST00000325404.1:c.277G>A	p.Glu93Lys	p.E93K	ENST00000325404	NM_003106.3	93	Gag/Aag					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220494	1220494	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	143	412	0	ENST00000326873.7:c.587G>T	p.Gly196Val	p.G196V	ENST00000326873	NM_000455.4	196	gGc/gTc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630162	187630162	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	145	294	1	ENST00000441802.2:c.820G>T	p.Ala274Ser	p.A274S	ENST00000441802	NM_005245.3	274	Gca/Tca					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94212842	94212842	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0006172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	60	328	0	ENST00000323929.3:c.400G>T	p.Gly134Trp	p.G134W	ENST00000323929	NM_005591.3	134	Ggg/Tgg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602320	10602320	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	237	460	2	ENST00000171111.5:c.1258del	p.Val420SerfsTer38	p.V420Sfs*38	ENST00000171111	NM_203500.1	420	Gtc/tc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	242	352	1	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55948121	55948121	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	199	411	0	ENST00000263923.4:c.3848+2T>G		p.X1283_splice	ENST00000263923	NM_002253.2	1283						NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945089	151945089	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	22	128	0	ENST00000262189.6:c.2430C>A	p.Asn810Lys	p.N810K	ENST00000262189	NM_170606.2	810	aaC/aaA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49421894	49421894	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	260	375	0	ENST00000301067.7:c.14413G>T	p.Glu4805Ter	p.E4805*	ENST00000301067	NM_003482.3	4805	Gag/Tag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32915170	32915170	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	349	874	1	ENST00000380152.3:c.6678A>T	p.Glu2226Asp	p.E2226D	ENST00000380152		2226	gaA/gaT					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11984783	11984783	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	137	280	0	ENST00000353533.5:c.329G>T	p.Arg110Leu	p.R110L	ENST00000353533	NM_003010.3	110	cGa/cTa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11168992	11168992	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	285	455	2	ENST00000344626.4:c.4486G>T	p.Glu1496Ter	p.E1496*	ENST00000344626	NM_003072.3	1496	Gag/Tag					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9520225	9520225	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	231	448	0	ENST00000353224.5:c.2044G>T	p.Val682Leu	p.V682L	ENST00000353224	NM_177990.2	682	Gtg/Ttg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40747141	40747141	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	181	388	0	ENST00000373198.4:c.2942-1G>T		p.X981_splice	ENST00000373198	NM_133170.3	981						NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411017	63411017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	262	316	1	ENST00000330258.3:c.2150G>A	p.Cys717Tyr	p.C717Y	ENST00000330258	NM_152424.3	717	tGc/tAc					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123220498	123220498	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	354	382	0	ENST00000218089.9:c.3155G>T	p.Gly1052Val	p.G1052V	ENST00000218089	NM_001042749.1	1052	gGt/gTt					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47641430	47641430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1465	433	815	3	ENST00000233146.2:c.815C>T	p.Ala272Val	p.A272V	ENST00000233146	NM_000251.2	272	gCg/gTg					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61725909	61725909	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	233	535	0	ENST00000401558.2:c.658C>G	p.Pro220Ala	p.P220A	ENST00000401558	NM_003400.3	220	Cca/Gca					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143081641	143081641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	587	578	0	ENST00000262992.4:c.1433C>A	p.Pro478Gln	p.P478Q	ENST00000262992	NM_001101669.1	478	cCa/cAa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49446187	49446187	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	308	300	0	ENST00000301067.7:c.1279G>C	p.Glu427Gln	p.E427Q	ENST00000301067	NM_003482.3	427	Gag/Cag					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121431338	121431338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	41	463	0	ENST00000257555.6:c.542G>A	p.Gly181Glu	p.G181E	ENST00000257555		181	gGg/gAg					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103514815	103514815	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	457	489	0	ENST00000355739.4:c.1316G>C	p.Gly439Ala	p.G439A	ENST00000355739	NM_000123.3	439	gGa/gCa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76954064	76954064	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0006091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	408	784	0	ENST00000373344.5:c.187G>T	p.Glu63Ter	p.E63*	ENST00000373344	NM_000489.3	63	Gag/Tag					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157522166	157522174	+	inframe_deletion	In_Frame_Del	DEL	GGCCCTGGC	GGCCCTGGC	-			P-0006091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	441	470	0	ENST00000346085.5:c.4444_4452del	p.Gly1482_Pro1484del	p.G1482_P1484del	ENST00000346085	NM_020732.3	1480	GGCCCTGGC/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578470	7578482	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCGGGGGTGT	CGGGCGGGGGTGT	-			P-0006091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	690	607	0	ENST00000269305.4:c.448_460del	p.Thr150AlafsTer16	p.T150Afs*16	ENST00000269305	NM_001126112.2	150	ACACCCCCGCCCGgc/gc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0000839-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			107	1295	368	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000839-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			230	225	481	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	196	337	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	170	422	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954353	48954353	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			35	55	343	0	ENST00000267163.4:c.1474G>T	p.Glu492Ter	p.E492*	ENST00000267163	NM_000321.2	492	Gag/Tag					NEWRECORD																																																																									
TMEM127	0	MSKCC	GRCh37	2	96920597	96920597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	89	435	0	ENST00000258439.3:c.383G>A	p.Arg128His	p.R128H	ENST00000258439	NM_001193304.2	128	cGc/cAc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117686796	117686796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	24	496	2	ENST00000368508.3:c.2921C>T	p.Ala974Val	p.A974V	ENST00000368508	NM_002944.2	974	gCg/gTg					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409453	80409453	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	11	242	0	ENST00000286548.4:c.661G>C	p.Glu221Gln	p.E221Q	ENST00000286548	NM_002072.3	221	Gaa/Caa					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91298109	91298109	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	50	463	0	ENST00000355112.3:c.1028C>T	p.Ser343Leu	p.S343L	ENST00000355112	NM_000057.2	343	tCa/tTa					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78727831	78727831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	102	540	0	ENST00000306801.3:c.676C>A	p.His226Asn	p.H226N	ENST00000306801	NM_020761.2	226	Cac/Aac					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044719	47044719	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	103	236	0	ENST00000329236.7:c.1885C>T	p.Gln629Ter	p.Q629*	ENST00000329236	NM_001204466.1	629	Cag/Tag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057661	27057661	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	106	798	0	ENST00000324856.7:c.1369del	p.Gln457LysfsTer162	p.Q457Kfs*162	ENST00000324856	NM_006015.4	457	Caa/aa					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266134	41266136	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	438	321	1	ENST00000349496.5:c.133_135delTCT	p.Ser45del	p.S45del	ENST00000349496	NM_001904.3	44	cCTTct/cct					NEWRECORD																																																																									
STAT3	6774	MSKCC	GRCh37	17	40475061	40475063	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	526	558	0	ENST00000264657.5:c.1847_1849del	p.Glu616del	p.E616del	ENST00000264657	NM_139276.2	616	gAAGga/gga					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426120	47426120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	568	524	0	ENST00000377045.4:c.640T>C	p.Ser214Pro	p.S214P	ENST00000377045	NM_001654.4	214	Tcc/Ccc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	294	287	0	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579321	7579322	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	267	247	1	ENST00000269305.4:c.365_366delTG	p.Val122AspfsTer26	p.V122Dfs*26	ENST00000269305	NM_001126112.2	122	gTG/g					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333991	70333993	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	84	239	2	ENST00000373644.4:c.1902_1904del	p.Val635del	p.V635del	ENST00000373644	NM_030625.2	632	tcTGTt/tct					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439874	52439874	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	277	360	1	ENST00000460680.1:c.838C>T	p.Gln280Ter	p.Q280*	ENST00000460680	NM_004656.3	280	Cag/Tag					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63845621	63845621	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	340	269	0	ENST00000279873.7:c.1360G>C	p.Glu454Gln	p.E454Q	ENST00000279873	NM_032199.2	454	Gaa/Caa					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870835	12870835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	195	137	0	ENST00000228872.4:c.62C>T	p.Ala21Val	p.A21V	ENST00000228872	NM_004064.3	21	gCg/gTg					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39629539	39629539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	225	382	0	ENST00000262039.4:c.2233C>T	p.His745Tyr	p.H745Y	ENST00000262039	NM_002647.2	745	Cac/Tac					NEWRECORD																																																																									
NFKBIA	0	MSKCC	GRCh37	14	35871245	35871246	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	918	498	0	ENST00000216797.5:c.927_928del	p.Phe310TrpfsTer30	p.F310Wfs*30	ENST00000216797	NM_020529.2	309	gtGTtt/gttt					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65313265	65313267	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	456	609	0	ENST00000342505.4:c.1847_1849del	p.Lys616del	p.K616del	ENST00000342505	NM_002227.2	616	aAGAta/ata					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63845627	63845627	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	275	245	0	ENST00000279873.7:c.1366del	p.Glu456LysfsTer23	p.E456Kfs*23	ENST00000279873	NM_032199.2	456	Gaa/aa					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30691941	30691943	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	246	254	0	ENST00000359013.4:c.521_523del	p.Phe174del	p.F174del	ENST00000359013	NM_001024847.2	173	aTCTtc/atc					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713896	30713899	+	frameshift_variant	Frame_Shift_Del	DEL	TCTG	TCTG	-			P-0008324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	256	274	0	ENST00000359013.4:c.1301_1304delCTGT	p.Ser434TrpfsTer21	p.S434Wfs*21	ENST00000359013	NM_001024847.2	432	acTCTG/ac					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	156	141	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0005352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	462	500	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186501402	186501402	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0005352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2043	773	888	1	ENST00000323963.5:c.3G>A	p.Met1?	p.M1?	ENST00000323963		1	atG/atA					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6043370	6043370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	121	88	0	ENST00000265849.7:c.304G>A	p.Glu102Lys	p.E102K	ENST00000265849	NM_000535.5	102	Gaa/Aaa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945054	151945054	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	72	218	0	ENST00000262189.6:c.2465A>G	p.Lys822Arg	p.K822R	ENST00000262189	NM_170606.2	822	aAa/aGa					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64138133	64138133	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	346	366	1	ENST00000334205.4:c.2056C>T	p.Arg686Trp	p.R686W	ENST00000334205	NM_003942.2	686	Cgg/Tgg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2121834	2121834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	231	309	0	ENST00000219476.3:c.1996C>T	p.Pro666Ser	p.P666S	ENST00000219476	NM_000548.3	666	Ccc/Tcc					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7976980	7976980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	420	426	7	ENST00000319144.4:c.1750G>A	p.Gly584Ser	p.G584S	ENST00000319144	NM_001139.2	584	Ggc/Agc					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38512320	38512320	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	448	421	1	ENST00000254066.5:c.1231C>T	p.Gln411Ter	p.Q411*	ENST00000254066	NM_000964.3	411	Cag/Tag					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546769	9546769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	269	309	0	ENST00000353224.5:c.1253C>T	p.Ser418Phe	p.S418F	ENST00000353224	NM_177990.2	418	tCc/tTc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21994051	21994203	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTAGAGACGAATTATCTGTTTACGAAATCACACCAAACAAAACAAGTGCCGAATGCGCCCCGGACTTTTCGAGGGCCTTTCCTACCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCA	GGCTAGAGACGAATTATCTGTTTACGAAATCACACCAAACAAAACAAGTGCCGAATGCGCCCCGGACTTTTCGAGGGCCTTTCCTACCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCA	-			P-0005352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	119	159	2	ENST00000361570.3:c.251_316+87delTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAGGTAGGAAAGGCCCTCGAAAAGTCCGGGGCGCATTCGGCACTTGTTTTGTTTGGTGTGATTTCGTAAACAGATAATTCGTCTCTAGCC		p.X84_splice	ENST00000361570	NM_058195.3	84						NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21994051	21994203	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTAGAGACGAATTATCTGTTTACGAAATCACACCAAACAAAACAAGTGCCGAATGCGCCCCGGACTTTTCGAGGGCCTTTCCTACCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCA	GGCTAGAGACGAATTATCTGTTTACGAAATCACACCAAACAAAACAAGTGCCGAATGCGCCCCGGACTTTTCGAGGGCCTTTCCTACCTGGTCTTCTAGGAAGCGGCTGCTGCCCTAGACGCTGGCTCCTCAGTAGCATCAGCACGAGGGCCA	-			P-0005352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	119	159	2	ENST00000361570.3:c.251_316+87delTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAGGTAGGAAAGGCCCTCGAAAAGTCCGGGGCGCATTCGGCACTTGTTTTGTTTGGTGTGATTTCGTAAACAGATAATTCGTCTCTAGCC		p.X84_splice	ENST00000361570	NM_058195.3	84						NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266100	41266100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	148	481	0	ENST00000349496.5:c.97T>C	p.Ser33Pro	p.S33P	ENST00000349496	NM_001904.3	33	Tct/Cct					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47040945	47040945	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	163	399	0	ENST00000329236.7:c.1241C>A	p.Ser414Ter	p.S414*	ENST00000329236	NM_001204466.1	414	tCg/tAg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70357700	70357700	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	167	624	0	ENST00000374080.3:c.5952del	p.Val1985Ter	p.V1985*	ENST00000374080		1984	cTt/ct					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242467	55242486	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATCT	AATTAAGAGAAGCAACATCT	TC			P-0005198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	115	365	0	ENST00000275493.2:c.2237_2256delinsTC	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCT/gTC					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188196	10188196	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0005134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	122	376	0	ENST00000256474.2:c.341-2A>G		p.X114_splice	ENST00000256474	NM_000551.3	114						NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128846194	128846194	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	126	464	1	ENST00000249373.3:c.1124T>A	p.Ile375Asn	p.I375N	ENST00000249373	NM_005631.4	375	aTc/aAc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29684014	29684014	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	71	467	0	ENST00000358273.4:c.7775A>G	p.His2592Arg	p.H2592R	ENST00000358273	NM_001042492.2	2592	cAt/cGt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151860547	151860547	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	178	464	0	ENST00000262189.6:c.10115del	p.Asn3372MetfsTer12	p.N3372Mfs*12	ENST00000262189	NM_170606.2	3372	aAt/at					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193117026	193117038	+	frameshift_variant	Frame_Shift_Del	DEL	TCAATCTGTAAAA	TCAATCTGTAAAA	-			P-0005134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	106	417	1	ENST00000367435.3:c.759_771del	p.Gln254ProfsTer61	p.Q254Pfs*61	ENST00000367435	NM_024529.4	253	ctTCAATCTGTAAAA/ct					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108172440	108172442	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0005134-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	159	502	0	ENST00000278616.4:c.5243_5245del	p.Ser1748_Phe1749delinsIle	p.S1748_F1749delinsI	ENST00000278616	NM_000051.3	1748	aGTTtc/atc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	138	484	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	191	353	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212566890	212566890	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	54	298	0	ENST00000342788.4:c.1291G>A	p.Gly431Ser	p.G431S	ENST00000342788	NM_005235.2	431	Ggc/Agc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685308	89685308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	32	286	0	ENST00000371953.3:c.203A>G	p.Tyr68Cys	p.Y68C	ENST00000371953	NM_000314.4	68	tAc/tGc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420229	49420229	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	280	482	2	ENST00000301067.7:c.15520C>T	p.Arg5174Trp	p.R5174W	ENST00000301067	NM_003482.3	5174	Cgg/Tgg					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2226132	2226132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1662	273	589	0	ENST00000326181.6:c.1829C>T	p.Thr610Met	p.T610M	ENST00000326181	NM_032271.2	610	aCg/aTg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89836984	89836984	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199938598		P-0005181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1471	169	528	0	ENST00000389301.3:c.2210C>T	p.Ala737Val	p.A737V	ENST00000389301	NM_000135.2	737	gCt/gTt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	45	246	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433896	49433896	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	38	340	1	ENST00000301067.7:c.7657C>T	p.Gln2553Ter	p.Q2553*	ENST00000301067	NM_003482.3	2553	Cag/Tag					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	82	477	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	8	208	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11174917	11174917	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	57	393	0	ENST00000361445.4:c.7117G>C	p.Glu2373Gln	p.E2373Q	ENST00000361445	NM_004958.3	2373	Gag/Cag					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11273585	11273585	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	34	311	0	ENST00000361445.4:c.3156C>G	p.Ile1052Met	p.I1052M	ENST00000361445	NM_004958.3	1052	atC/atG					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11273594	11273594	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	33	287	0	ENST00000361445.4:c.3147G>C	p.Gln1049His	p.Q1049H	ENST00000361445	NM_004958.3	1049	caG/caC					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61721100	61721100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	76	454	0	ENST00000401558.2:c.1174C>G	p.Pro392Ala	p.P392A	ENST00000401558	NM_003400.3	392	Ccg/Gcg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41280750	41280750	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	80	388	0	ENST00000349496.5:c.2263G>C	p.Asp755His	p.D755H	ENST00000349496	NM_001904.3	755	Gat/Cat					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47103792	47103792	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	51	474	0	ENST00000409792.3:c.6154C>G	p.Pro2052Ala	p.P2052A	ENST00000409792	NM_014159.6	2052	Cct/Gct					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70014160	70014160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	141	838	0	ENST00000352241.4:c.1324C>G	p.Leu442Val	p.L442V	ENST00000352241	NM_198159.2	442	Ctc/Gtc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187518306	187518306	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	17	83	0	ENST00000441802.2:c.12388G>C	p.Glu4130Gln	p.E4130Q	ENST00000441802	NM_005245.3	4130	Gag/Cag					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187539252	187539252	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	73	390	0	ENST00000441802.2:c.8488C>T	p.Gln2830Ter	p.Q2830*	ENST00000441802	NM_005245.3	2830	Cag/Tag					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32183005	32183005	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	24	353	0	ENST00000375023.3:c.2019G>C	p.Gln673His	p.Q673H	ENST00000375023	NM_004557.3	673	caG/caC					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32183067	32183067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	32	551	0	ENST00000375023.3:c.1957G>A	p.Asp653Asn	p.D653N	ENST00000375023	NM_004557.3	653	Gat/Aat					NEWRECORD																																																																									
VEGFA	0	MSKCC	GRCh37	6	43738986	43738986	+	start_lost	Translation_Start_Site	SNP	G	G	A			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	149	418	0	ENST00000523873.1:c.3G>A	p.Met1?	p.M1?	ENST00000523873		1	atG/atA					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101907119	101907119	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	142	398	0	ENST00000374994.4:c.1079C>A	p.Ser360Ter	p.S360*	ENST00000374994	NM_004612.2	360	tCa/tAa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433945	49433945	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	38	305	0	ENST00000301067.7:c.7608C>A	p.Phe2536Leu	p.F2536L	ENST00000301067	NM_003482.3	2536	ttC/ttA					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56486842	56486842	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	105	457	0	ENST00000267101.3:c.1256G>C	p.Gly419Ala	p.G419A	ENST00000267101	NM_001982.3	419	gGa/gCa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2133737	2133737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	52	535	0	ENST00000219476.3:c.3925C>T	p.Pro1309Ser	p.P1309S	ENST00000219476	NM_000548.3	1309	Cct/Tct					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68844155	68844155	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	53	410	0	ENST00000261769.5:c.743T>A	p.Ile248Asn	p.I248N	ENST00000261769	NM_004360.3	248	aTt/aAt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15983772	15983772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	112	311	0	ENST00000268712.3:c.3350C>T	p.Ser1117Leu	p.S1117L	ENST00000268712	NM_006311.3	1117	tCa/tTa					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37883959	37883959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	41	208	0	ENST00000269571.5:c.3430G>A	p.Asp1144Asn	p.D1144N	ENST00000269571		1144	Gat/Aat					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44942782	44942782	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005587-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	21	315	0	ENST00000377967.4:c.3362A>C	p.His1121Pro	p.H1121P	ENST00000377967	NM_021140.2	1121	cAt/cCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	572	404	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29443695	29443695	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	124	249	0	ENST00000389048.3:c.3522C>G	p.Phe1174Leu	p.F1174L	ENST00000389048	NM_004304.4	1174	ttC/ttG					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	216	249	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	371	421	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115110035	115110035	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	223	349	0	ENST00000257566.3:c.1843T>G	p.Ser615Ala	p.S615A	ENST00000257566	NM_016569.3	615	Tcc/Gcc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061231	38061231	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	873	420	0	ENST00000250448.2:c.758T>G	p.Met253Arg	p.M253R	ENST00000250448	NM_004496.3	253	aTg/aGg					NEWRECORD																																																																									
BCL2L11	0	MSKCC	GRCh37	2	111907724	111907724	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0006756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	307	408	0	ENST00000393256.3:c.498G>C	p.Arg166Ser	p.R166S	ENST00000393256	NM_006538.4	166	agG/agC					NEWRECORD																																																																									
SRSF2	0	MSKCC	GRCh37	17	74732250	74732250	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	390	547	0	ENST00000359995.5:c.659C>T	p.Ser220Phe	p.S220F	ENST00000359995	NM_001195427.1	220	tCc/tTc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	304	436	0	ENST00000269305.4:c.569del	p.Pro190LeufsTer57	p.P190Lfs*57	ENST00000269305	NM_001126112.2	190	cCt/ct					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0007315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	223	554	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174814	112174814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	176	465	0	ENST00000257430.4:c.3523C>T	p.Gln1175Ter	p.Q1175*	ENST00000257430	NM_000038.5	1175	Cag/Tag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117708054	117708054	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	143	459	1	ENST00000368508.3:c.2123C>T	p.Ser708Leu	p.S708L	ENST00000368508	NM_002944.2	708	tCa/tTa					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3807902	3807902	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	102	479	2	ENST00000262367.5:c.3517C>T	p.Arg1173Ter	p.R1173*	ENST00000262367	NM_004380.2	1173	Cga/Tga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0008338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	136	266	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151877996	151877996	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	141	387	0	ENST00000262189.6:c.6949C>T	p.Gln2317Ter	p.Q2317*	ENST00000262189	NM_170606.2	2317	Caa/Taa					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0008338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	167	326	0	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003941-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			316	107	302	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003941-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			371	301	691	0	ENST00000269305.4:c.821T>C	p.Val274Ala	p.V274A	ENST00000269305	NM_001126112.2	274	gTt/gCt					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508404	106508404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003941-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			308	70	265	0	ENST00000359195.3:c.398G>A	p.Gly133Asp	p.G133D	ENST00000359195	NM_002649.2	133	gGc/gAc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435051	49435051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	79	241	0	ENST00000301067.7:c.6502C>T	p.Pro2168Ser	p.P2168S	ENST00000301067	NM_003482.3	2168	Ccc/Tcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	108	270	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	34	415	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176618906	176618906	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	94	366	0	ENST00000439151.2:c.949A>G	p.Thr317Ala	p.T317A	ENST00000439151	NM_022455.4	317	Acg/Gcg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72991910	72991910	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1078	69	453	0	ENST00000268489.5:c.2135G>T	p.Arg712Leu	p.R712L	ENST00000268489	NM_006885.3	712	cGg/cTg					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30323856	30323856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	69	375	0	ENST00000322652.5:c.1834G>A	p.Glu612Lys	p.E612K	ENST00000322652	NM_015355.2	612	Gaa/Aaa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40713367	40713367	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	98	296	0	ENST00000373198.4:c.4148A>T	p.Gln1383Leu	p.Q1383L	ENST00000373198	NM_133170.3	1383	cAg/cTg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41573790	41573790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	100	366	0	ENST00000263253.7:c.6075G>T	p.Leu2025Phe	p.L2025F	ENST00000263253	NM_001429.3	2025	ttG/ttT					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938428	76938428	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006314-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	18	203	0	ENST00000373344.5:c.2320del	p.Asp774MetfsTer29	p.D774Mfs*29	ENST00000373344	NM_000489.3	774	Gat/at					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	23	198	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0005120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			79	17	179	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
NPM1	0	MSKCC	GRCh37	5	170819820	170819820	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0005120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	56	518	0	ENST00000296930.5:c.459G>T	p.Gln153His	p.Q153H	ENST00000296930	NM_002520.6	153	caG/caT					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152415547	152415547	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	148	502	0	ENST00000206249.3:c.1397T>A	p.Leu466Gln	p.L466Q	ENST00000206249	NM_000125.3	466	cTg/cAg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68856050	68856050	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	103	489	1	ENST00000261769.5:c.1859delC	p.Pro620LeufsTer11	p.P620Lfs*11	ENST00000261769	NM_004360.3	620	Cct/ct					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593613	55593613	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	206	478	1	ENST00000288135.5:c.1679T>A	p.Val560Asp	p.V560D	ENST00000288135	NM_000222.2	560	gTt/gAt					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119148930	119148930	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	11	437	0	ENST00000264033.4:c.1150T>C	p.Cys384Arg	p.C384R	ENST00000264033	NM_005188.3	384	Tgt/Cgt					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142281913	142281923	+	frameshift_variant	Frame_Shift_Del	DEL	CAATCCGCAGA	CAATCCGCAGA	-			P-0008486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	83	294	0	ENST00000350721.4:c.321_331del	p.Leu108SerfsTer14	p.L108Sfs*14	ENST00000350721	NM_001184.3	107	ctTCTGCGGATTGca/ctca					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	42	219	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	52	232	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0005011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	94	258	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63810716	63810716	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	35	222	0	ENST00000279873.7:c.803T>C	p.Val268Ala	p.V268A	ENST00000279873	NM_032199.2	268	gTt/gCt					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99454671	99454671	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0005011-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	46	217	0	ENST00000268035.6:c.1589+1G>A		p.X530_splice	ENST00000268035	NM_000875.3	530						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	307	420	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128036912	128036912	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	346	654	0	ENST00000285398.2:c.1567G>A	p.Val523Met	p.V523M	ENST00000285398	NM_000122.1	523	Gtg/Atg					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098953	178098953	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	279	431	0	ENST00000397062.3:c.92G>C	p.Gly31Ala	p.G31A	ENST00000397062	NM_006164.4	31	gGa/gCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	314	687	0	ENST00000269305.4:c.826G>C	p.Ala276Pro	p.A276P	ENST00000269305	NM_001126112.2	276	Gcc/Ccc					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258681	115258681	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	219	362	0	ENST00000369535.4:c.101C>G	p.Pro34Arg	p.P34R	ENST00000369535	NM_002524.4	34	cCc/cGc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120465043	120465043	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	98	423	0	ENST00000256646.2:c.5029C>T	p.Gln1677Ter	p.Q1677*	ENST00000256646	NM_024408.3	1677	Cag/Tag					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209104698	209104698	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	219	414	1	ENST00000345146.2:c.880G>T	p.Val294Leu	p.V294L	ENST00000345146	NM_005896.2	294	Gtg/Ttg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47155400	47155400	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	341	706	0	ENST00000409792.3:c.4681G>A	p.Gly1561Ser	p.G1561S	ENST00000409792	NM_014159.6	1561	Ggc/Agc					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128852291	128852291	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	164	323	0	ENST00000249373.3:c.2363G>C	p.Ter788SerextTer38	p.*788Sext*38	ENST00000249373	NM_005631.4	788	tGa/tCa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518264	8518264	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	128	479	0	ENST00000356435.5:c.1127C>G	p.Thr376Arg	p.T376R	ENST00000356435		376	aCa/aGa					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135776220	135776220	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	242	438	0	ENST00000298552.3:c.2507C>G	p.Ser836Ter	p.S836*	ENST00000298552	NM_001162426.1	836	tCa/tGa					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88659584	88659584	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	179	510	0	ENST00000372037.3:c.367G>C	p.Glu123Gln	p.E123Q	ENST00000372037	NM_004329.2	123	Gaa/Caa					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344561	118344561	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	507	1180	0	ENST00000534358.1:c.2687G>C	p.Gly896Ala	p.G896A	ENST00000534358	NM_005933.3	896	gGa/gCa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433004	49433004	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	205	428	0	ENST00000301067.7:c.8366+1G>T		p.X2789_splice	ENST00000301067	NM_003482.3	2789						NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49445026	49445026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	82	225	0	ENST00000301067.7:c.2440C>T	p.His814Tyr	p.H814Y	ENST00000301067	NM_003482.3	814	Cac/Tac					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678547	88678547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	66	344	0	ENST00000360948.2:c.989C>A	p.Pro330Gln	p.P330Q	ENST00000360948	NM_001012338.2	330	cCa/cAa					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23641726	23641726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	361	625	0	ENST00000261584.4:c.1749G>T	p.Leu583Phe	p.L583F	ENST00000261584	NM_024675.3	583	ttG/ttT					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72821373	72821373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	101	649	3	ENST00000268489.5:c.10802C>T	p.Ser3601Leu	p.S3601L	ENST00000268489	NM_006885.3	3601	tCg/tTg					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41245006	41245006	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	336	633	1	ENST00000357654.3:c.2542G>T	p.Glu848Ter	p.E848*	ENST00000357654	NM_007294.3	848	Gaa/Taa					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59876540	59876540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	324	450	0	ENST00000259008.2:c.1261G>A	p.Glu421Lys	p.E421K	ENST00000259008	NM_032043.2	421	Gaa/Aaa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11105642	11105642	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	187	461	0	ENST00000344626.4:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000344626	NM_003072.3	520	Gag/Tag					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561012	9561012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	211	494	0	ENST00000353224.5:c.770G>T	p.Trp257Leu	p.W257L	ENST00000353224	NM_177990.2	257	tGg/tTg					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20148659	20148659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	163	256	0	ENST00000379607.5:c.404G>A	p.Gly135Glu	p.G135E	ENST00000379607	NM_001412.3	135	gGa/gAa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44929162	44929162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	195	331	0	ENST00000377967.4:c.2262G>A	p.Met754Ile	p.M754I	ENST00000377967	NM_021140.2	754	atG/atA					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38955767	38955767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	426	419	0	ENST00000357387.3:c.2539C>T	p.Leu847Phe	p.L847F	ENST00000357387	NM_152756.3	847	Ctc/Ttc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0008204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	41	457	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008204-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	27	371	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	231	497	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0009000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	236	342	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114710666	114710666	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1521	325	763	2	ENST00000543371.1:c.151G>T	p.Glu51Ter	p.E51*	ENST00000543371	NM_001198531.1	51	Gaa/Taa					NEWRECORD																																																																									
HIST1H3C	0	MSKCC	GRCh37	6	26045684	26045684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2032	252	907	0	ENST00000540144.1:c.46G>A	p.Ala16Thr	p.A16T	ENST00000540144	NM_003531.2	16	Gct/Act					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151866325	151866325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	127	463	0	ENST00000262189.6:c.9463A>G	p.Ile3155Val	p.I3155V	ENST00000262189	NM_170606.2	3155	Ata/Gta					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56772438	56772438	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	104	592	0	ENST00000337432.4:c.292G>A	p.Gly98Ser	p.G98S	ENST00000337432	NM_058216.2	98	Ggc/Agc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16012220	16012220	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	119	401	0	ENST00000268712.3:c.2062C>T	p.Arg688Ter	p.R688*	ENST00000268712	NM_006311.3	688	Cga/Tga					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911856	32911856	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	58	616	0	ENST00000380152.3:c.3365del	p.Gly1122GlufsTer28	p.G1122Efs*28	ENST00000380152		1122	Gga/ga					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42866242	42866281	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CCCGGGTTTATTACAGGAAATAAACACAAAGAGAATCCTA	CCCGGGTTTATTACAGGAAATAAACACAAAGAGAATCCTA	-			P-0009546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	16	129	0	ENST00000398585.3:c.349+2_349+41del		p.X117_splice	ENST00000398585	NM_001135099.1	117						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	125	402	0	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	130	391	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	124	380	1	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3841994	3841994	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	155	506	0	ENST00000262367.5:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000262367	NM_004380.2	440	Cga/Tga					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16068381	16068381	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			42	15	37	0	ENST00000268712.3:c.530C>A	p.Ser177Ter	p.S177*	ENST00000268712	NM_006311.3	177	tCa/tAa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	88	412	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1010	191	643	0	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993077	72993077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1439	413	1015	2	ENST00000268489.5:c.968C>T	p.Ser323Phe	p.S323F	ENST00000268489	NM_006885.3	323	tCc/tTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	401	398	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	159	339	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29910333	29910333	+	start_lost	Translation_Start_Site	SNP	G	G	T			P-0007838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	83	548	0	ENST00000376809.5:c.3G>T	p.Met1?	p.M1?	ENST00000376809	NM_002116.7	1	atG/atT					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41133845	41133845	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1205	161	659	0	ENST00000379561.5:c.1783C>T	p.Gln595Ter	p.Q595*	ENST00000379561	NM_002015.3	595	Cag/Tag					NEWRECORD																																																																									
BBC3	0	MSKCC	GRCh37	19	47729820	47729820	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	159	408	0	ENST00000449228.1:c.568+1G>A		p.X190_splice	ENST00000449228	NM_001127240.2	190						NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89871723	89872081	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGGATGCTTCCATCTGTTCACAAAGGCAGCACAGATTCCTGAAGAGCCACGATCCCACAGCATGCATGTCGGGATGGCTGGAGACACACACAGAGGCAGACGTAAGGCTCAACTAAATCCCATCATCAGGGGATTGAGTTGAGCCATATGTCCCAATTTTTTTTTTGAGACAGTTTTTTGCTGTCACTGAGGCTGGAGTGCAGTGGCGCAATCAGTCACTGCACCCTCGACCTCCCAGGCTCAAGCAATCCTTCCACCTCAGCCTCCTGAGTAGTTGGGACAACAGGCGCATACCACCACGCCCAGCTGGAGGTCTTACTACTTTGCCCAGGCTGGACTCAAACTCCCGGGCTCAAAA	CAGGATGCTTCCATCTGTTCACAAAGGCAGCACAGATTCCTGAAGAGCCACGATCCCACAGCATGCATGTCGGGATGGCTGGAGACACACACAGAGGCAGACGTAAGGCTCAACTAAATCCCATCATCAGGGGATTGAGTTGAGCCATATGTCCCAATTTTTTTTTTGAGACAGTTTTTTGCTGTCACTGAGGCTGGAGTGCAGTGGCGCAATCAGTCACTGCACCCTCGACCTCCCAGGCTCAAGCAATCCTTCCACCTCAGCCTCCTGAGTAGTTGGGACAACAGGCGCATACCACCACGCCCAGCTGGAGGTCTTACTACTTTGCCCAGGCTGGACTCAAACTCCCGGGCTCAAAA	-			P-0007838-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	43	466	1	ENST00000389301.3:c.597-281_674del		p.X199_splice	ENST00000389301	NM_000135.2	199						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0006641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	1170	516	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18278049	18278049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	210	377	2	ENST00000222254.8:c.1669G>T	p.Asp557Tyr	p.D557Y	ENST00000222254	NM_005027.3	557	Gac/Tac					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143192	30143192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	102	265	1	ENST00000389048.3:c.334G>A	p.Ala112Thr	p.A112T	ENST00000389048	NM_004304.4	112	Gcc/Acc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116436137	116436137	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	72	303	0	ENST00000397752.3:c.4132G>T	p.Glu1378Ter	p.E1378*	ENST00000397752	NM_000245.2	1378	Gag/Tag					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41565575	41565575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	188	434	0	ENST00000263253.7:c.4241A>G	p.Tyr1414Cys	p.Y1414C	ENST00000263253	NM_001429.3	1414	tAt/tGt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	147	315	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	285	223	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	58	273	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	86	381	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26029169	26029169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	38	345	1	ENST00000435504.4:c.181C>T	p.His61Tyr	p.H61Y	ENST00000435504		61	Cac/Tac					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12037445	12037445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	85	402	3	ENST00000396373.4:c.1076G>A	p.Arg359Gln	p.R359Q	ENST00000396373	NM_001987.4	359	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	264	480	0	ENST00000269305.4:c.808T>G	p.Phe270Val	p.F270V	ENST00000269305	NM_001126112.2	270	Ttt/Gtt					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	GC			P-0007054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	240	604	1	ENST00000269571.5:c.2263_2264delinsGC	p.Leu755Ala	p.L755A	ENST00000269571		755	TTg/GCg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	272	605	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	369	829	0	ENST00000397062.3:c.235G>A	p.Glu79Lys	p.E79K	ENST00000397062	NM_006164.4	79	Gag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27088788	27088788	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	192	786	0	ENST00000324856.7:c.2397G>T	p.Gln799His	p.Q799H	ENST00000324856	NM_006015.4	799	caG/caT					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225376262	225376262	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	151	478	0	ENST00000264414.4:c.692C>T	p.Ser231Leu	p.S231L	ENST00000264414	NM_003590.4	231	tCa/tTa					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52702594	52702594	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	345	617	0	ENST00000394830.3:c.304A>G	p.Lys102Glu	p.K102E	ENST00000394830	NM_018313.4	102	Aaa/Gaa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56167747	56167747	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	222	649	2	ENST00000399503.3:c.1312G>T	p.Glu438Ter	p.E438*	ENST00000399503	NM_005921.1	438	Gaa/Taa					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67576505	67576505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	234	586	0	ENST00000274335.5:c.784A>G	p.Arg262Gly	p.R262G	ENST00000274335		262	Aga/Gga					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589273	67589273	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	105	468	0	ENST00000274335.5:c.1261G>T	p.Asp421Tyr	p.D421Y	ENST00000274335		421	Gat/Tat					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2963973	2963973	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	272	917	0	ENST00000396946.4:c.1834G>T	p.Gly612Ter	p.G612*	ENST00000396946	NM_032415.4	612	Gga/Tga					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26911754	26911754	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	418	862	0	ENST00000381527.3:c.179C>G	p.Ser60Cys	p.S60C	ENST00000381527	NM_001260.1	60	tCt/tGt					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56348481	56348481	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	527	1153	1	ENST00000348428.3:c.289G>T	p.Gly97Cys	p.G97C	ENST00000348428	NM_006785.3	97	Ggt/Tgt					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1646417	1646417	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	347	747	0	ENST00000344749.5:c.82C>G	p.Leu28Val	p.L28V	ENST00000344749	NM_001136139.2	28	Ctg/Gtg					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54961591	54961591	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	155	340	0	ENST00000312783.6:c.43-2A>C		p.X15_splice	ENST00000312783	NM_198436.1	15						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29661997	29661997	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	293	646	2	ENST00000358273.4:c.5958del	p.Lys1986AsnfsTer26	p.K1986Nfs*26	ENST00000358273	NM_001042492.2	1985	gAa/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	218	717	1	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38952513	38952513	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	54	232	0	ENST00000357387.3:c.2912T>C	p.Val971Ala	p.V971A	ENST00000357387	NM_152756.3	971	gTa/gCa					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89836338	89836338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	82	620	1	ENST00000389301.3:c.2411G>A	p.Gly804Asp	p.G804D	ENST00000389301	NM_000135.2	804	gGt/gAt					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589557	67589598	+	inframe_deletion	In_Frame_Del	DEL	TAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACAC	TAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACAC	-			P-0004942-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	141	342	0	ENST00000274335.5:c.1321_1362delAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACT	p.Asn441_Thr454del	p.N441_T454del	ENST00000274335		440	gaTAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACt/gat					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156838040	156838040	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	T	T	A			P-0007105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	77	543	0	ENST00000524377.1:c.573T>A	p.Cys191Ter	p.C191*	ENST00000524377	NM_002529.3	191	tgT/tgA					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247243	153247243	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	299	555	1	ENST00000281708.4:c.1559A>T	p.Asp520Val	p.D520V	ENST00000281708	NM_033632.3	520	gAt/gTt					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7216542	7216542	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	175	652	0	ENST00000380728.2:c.793T>G	p.Phe265Val	p.F265V	ENST00000380728		265	Ttc/Gtc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	259	409	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249028	55249028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	176	381	1	ENST00000275493.2:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000275493	NM_005228.3	776	Cgc/Tgc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187539675	187539675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	150	353	0	ENST00000441802.2:c.8065G>T	p.Val2689Phe	p.V2689F	ENST00000441802	NM_005245.3	2689	Gtc/Ttc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1222982	1222982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0007239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			18	125	165	0	ENST00000326873.7:c.921-2A>T		p.X307_splice	ENST00000326873	NM_000455.4	307						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600464	10600464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	220	367	0	ENST00000171111.5:c.1391G>T	p.Gly464Val	p.G464V	ENST00000171111	NM_203500.1	464	gGc/gTc					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411420	63411420	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007239-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	135	366	0	ENST00000330258.3:c.1747G>T	p.Ala583Ser	p.A583S	ENST00000330258	NM_152424.3	583	Gca/Tca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	443	534	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332						NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133218844	133218844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	103	567	0	ENST00000320574.5:c.5092G>A	p.Glu1698Lys	p.E1698K	ENST00000320574	NM_006231.2	1698	Gag/Aag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	70	409	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78899272	78899272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	165	364	1	ENST00000306801.3:c.2911G>A	p.Val971Ile	p.V971I	ENST00000306801	NM_020761.2	971	Gtc/Atc					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106197530	106197530	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	157	682	0	ENST00000380013.4:c.5863G>T	p.Glu1955Ter	p.E1955*	ENST00000380013	NM_001127208.2	1955	Gag/Tag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108158382	108158382	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	223	546	1	ENST00000278616.4:c.4049C>T	p.Thr1350Met	p.T1350M	ENST00000278616	NM_000051.3	1350	aCg/aTg					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73355941	73355941	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	189	570	1	ENST00000377767.4:c.30G>T	p.Lys10Asn	p.K10N	ENST00000377767	NM_014953.3	10	aaG/aaT					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857275	9857275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	106	611	2	ENST00000330684.3:c.4126C>T	p.Arg1376Cys	p.R1376C	ENST00000330684	NM_001134407.1	1376	Cgc/Tgc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11174395	11174395	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	108	459	0	ENST00000361445.4:c.7280T>A	p.Leu2427Gln	p.L2427Q	ENST00000361445	NM_004958.3	2427	cTg/cAg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188207	10188207	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	80	372	0	ENST00000256474.2:c.350G>A	p.Trp117Ter	p.W117*	ENST00000256474	NM_000551.3	117	tGg/tAg					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729997	41729997	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	84	682	0	ENST00000242208.4:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000242208	NM_002192.2	178	Cag/Tag					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145740620	145740620	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	74	458	0	ENST00000428558.2:c.1397C>G	p.Pro466Arg	p.P466R	ENST00000428558	NM_004260.3	466	cCg/cGg					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17953292	17953292	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	94	409	0	ENST00000458235.1:c.694C>A	p.His232Asn	p.H232N	ENST00000458235	NM_000215.3	232	Cac/Aac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	27	310	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574000	7574000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	451	858	0	ENST00000269305.4:c.1027G>T	p.Glu343Ter	p.E343*	ENST00000269305	NM_001126112.2	343	Gag/Tag					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212251583	212251583	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	69	342	0	ENST00000342788.4:c.3476A>C	p.Lys1159Thr	p.K1159T	ENST00000342788	NM_005235.2	1159	aAa/aCa					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98212184	98212184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	128	776	0	ENST00000331920.6:c.3488G>T	p.Gly1163Val	p.G1163V	ENST00000331920	NM_000264.3	1163	gGc/gTc					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32410669	32410669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	219	641	0	ENST00000332351.3:c.1489G>A	p.Asp497Asn	p.D497N	ENST00000332351	NM_024426.4	497	Gat/Aat					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89347035	89347035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	135	766	0	ENST00000301030.4:c.5915G>C	p.Ser1972Thr	p.S1972T	ENST00000301030	NM_001256183.1	1972	aGc/aCc					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023958	31023958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	141	623	1	ENST00000375687.4:c.3443G>A	p.Arg1148His	p.R1148H	ENST00000375687	NM_015338.5	1148	cGc/cAc					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176176047	176176049	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0005224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	90	500	0	ENST00000367669.3:c.66_68del	p.Ser23del	p.S23del	ENST00000367669	NM_022457.5	22	tcCTCg/tcg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	162	806	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999042	100999042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	254	867	1	ENST00000325455.5:c.760G>A	p.Ala254Thr	p.A254T	ENST00000325455	NM_001202474.3	254	Gcg/Acg					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69928307	69928307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	39	684	0	ENST00000352241.4:c.127G>A	p.Ala43Thr	p.A43T	ENST00000352241	NM_198159.2	43	Gcc/Acc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2120559	2120559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	200	797	0	ENST00000219476.3:c.1819G>A	p.Ala607Thr	p.A607T	ENST00000219476	NM_000548.3	607	Gcg/Acg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29667603	29667639	+	frameshift_variant	Frame_Shift_Del	DEL	TACCGCACTTCTTGAACAAAACCTGCATACTTTAGAT	TACCGCACTTCTTGAACAAAACCTGCATACTTTAGAT	-			P-0009205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	29	291	0	ENST00000358273.4:c.7002_7038del	p.Thr2335ValfsTer49	p.T2335Vfs*49	ENST00000358273	NM_001042492.2	2334	ggTACCGCACTTCTTGAACAAAACCTGCATACTTTAGAT/gg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579362	7579379	+	inframe_deletion	In_Frame_Del	DEL	AACCGTAGCTGCCCTGGT	AACCGTAGCTGCCCTGGT	-			P-0009205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	106	241	0	ENST00000269305.4:c.308_325del	p.Tyr103_Gly108del	p.Y103_G108del	ENST00000269305	NM_001126112.2	103	tACCAGGGCAGCTACGGTTtc/ttc					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30061024	30061034	+	frameshift_variant	Frame_Shift_Del	DEL	AACTCCTCAAA	AACTCCTCAAA	-			P-0009205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	202	291	0	ENST00000338641.4:c.856_866del	p.Asn286AlafsTer4	p.N286Afs*4	ENST00000338641	NM_000268.3	286	AACTCCTCAAAg/g					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0007855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	219	285	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106522568	106522568	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	74	421	1	ENST00000359195.3:c.2545C>T	p.Arg849Ter	p.R849*	ENST00000359195	NM_002649.2	849	Cga/Tga					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009565-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			887	324	463	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29456515	29456515	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009565-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1478	40	631	0	ENST00000389048.3:c.2403A>G	p.Ile801Met	p.I801M	ENST00000389048	NM_004304.4	801	atA/atG					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333944	70333944	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009565-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			821	169	407	0	ENST00000373644.4:c.1849C>T	p.Gln617Ter	p.Q617*	ENST00000373644	NM_030625.2	617	Cag/Tag					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938499	76938501	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0009565-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			415	192	235	0	ENST00000373344.5:c.2247_2249del	p.Ser750del	p.S750del	ENST00000373344	NM_000489.3	749	tcTTCa/tca					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061227	38061241	+	inframe_deletion	In_Frame_Del	DEL	GAACATGTTGCCGGA	GAACATGTTGCCGGA	-			P-0009565-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			594	114	405	0	ENST00000250448.2:c.748_762del	p.Ser250_Phe254del	p.S250_F254del	ENST00000250448	NM_004496.3	250	TCCGGCAACATGTTC/-					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139390986	139390986	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009565-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			657	41	462	0	ENST00000277541.6:c.7205T>G	p.Ile2402Ser	p.I2402S	ENST00000277541	NM_017617.3	2402	aTc/aGc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061212	38061232	+	inframe_deletion	In_Frame_Del	DEL	GTAGCAGCCGTTCTCGAACAT	GTAGCAGCCGTTCTCGAACAT	-			P-0009565-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			543	29	334	0	ENST00000250448.2:c.757_777delATGTTCGAGAACGGCTGCTAC	p.Met253_Tyr259del	p.M253_Y259del	ENST00000250448	NM_004496.3	253	ATGTTCGAGAACGGCTGCTAC/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0009630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	47	224	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	88	514	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060971	38061025	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCACTGTGGTCCAGAGTCTGGGGGCTGGCGGCGGGCCCGGGGGCCGGCGCGCC	CCCCACTGTGGTCCAGAGTCTGGGGGCTGGCGGCGGGCCCGGGGGCCGGCGCGCC	-			P-0009630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	37	223	0	ENST00000250448.2:c.964_1018del	p.Gly322ArgfsTer10	p.G322Rfs*10	ENST00000250448	NM_004496.3	322	GGCGCGCCGGCCCCCGGGCCCGCCGCCAGCCCCCAGACTCTGGACCACAGTGGGGcg/cg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16012128	16012167	+	frameshift_variant	Frame_Shift_Del	DEL	ATTGGAGGCTTCAATATCTTCATCCTCCTGAGCAGAAACA	ATTGGAGGCTTCAATATCTTCATCCTCCTGAGCAGAAACA	-			P-0009630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	67	566	0	ENST00000268712.3:c.2115_2154del	p.Val706LysfsTer49	p.V706Kfs*49	ENST00000268712	NM_006311.3	705	acTGTTTCTGCTCAGGAGGATGAAGATATTGAAGCCTCCAAT/ac					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16029453	16029454	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0009630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	116	590	0	ENST00000268712.3:c.1576_1577delGA	p.Glu526LysfsTer9	p.E526Kfs*9	ENST00000268712	NM_006311.3	526	GAa/a					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	159	290	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	164	277	0	ENST00000349496.5:c.100G>C	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Cga					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061249	38061249	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	136	223	1	ENST00000250448.2:c.740A>G	p.His247Arg	p.H247R	ENST00000250448	NM_004496.3	247	cAc/cGc					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	75	330	0	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56478922	56478922	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	434	437	1	ENST00000267101.3:c.378C>A	p.Asn126Lys	p.N126K	ENST00000267101	NM_001982.3	126	aaC/aaA					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56482537	56482537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	54	323	0	ENST00000267101.3:c.994G>A	p.Glu332Lys	p.E332K	ENST00000267101	NM_001982.3	332	Gag/Aag					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339680	116339680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	152	239	0	ENST00000397752.3:c.542G>A	p.Gly181Glu	p.G181E	ENST00000397752	NM_000245.2	181	gGa/gAa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108199857	108199857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	56	277	0	ENST00000278616.4:c.7199G>C	p.Arg2400Thr	p.R2400T	ENST00000278616	NM_000051.3	2400	aGa/aCa					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8073494	8073494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	515	696	1	ENST00000377482.5:c.1165G>A	p.Val389Ile	p.V389I	ENST00000377482	NM_018948.3	389	Gtt/Att					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16257989	16257989	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	310	301	0	ENST00000375759.3:c.5254G>A	p.Glu1752Lys	p.E1752K	ENST00000375759	NM_015001.2	1752	Gag/Aag					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16082790	16082790	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	69	54	0	ENST00000281043.3:c.604C>T	p.Pro202Ser	p.P202S	ENST00000281043	NM_005378.4	202	Cca/Tca					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52677265	52677265	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	222	370	0	ENST00000394830.3:c.994C>G	p.Arg332Gly	p.R332G	ENST00000394830	NM_018313.4	332	Cgt/Ggt					NEWRECORD																																																																									
FAM175A	0	MSKCC	GRCh37	4	84390222	84390222	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	143	255	0	ENST00000321945.7:c.559A>G	p.Met187Val	p.M187V	ENST00000321945	NM_139076.2	187	Atg/Gtg					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245442	153245442	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	150	320	0	ENST00000281708.4:c.1749A>C	p.Leu583Phe	p.L583F	ENST00000281708	NM_033632.3	583	ttA/ttC					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247208	153247208	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	217	360	0	ENST00000281708.4:c.1594A>C	p.Thr532Pro	p.T532P	ENST00000281708	NM_033632.3	532	Acc/Ccc					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247241	153247241	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	233	389	0	ENST00000281708.4:c.1561T>G	p.Phe521Val	p.F521V	ENST00000281708	NM_033632.3	521	Ttt/Gtt					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57752365	57752365	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	130	282	0	ENST00000274289.3:c.1208A>C	p.Lys403Thr	p.K403T	ENST00000274289	NM_006622.3	403	aAa/aCa					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93982096	93982096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	238	462	1	ENST00000369303.4:c.1369C>T	p.Arg457Trp	p.R457W	ENST00000369303	NM_004440.3	457	Cgg/Tgg					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157100550	157100550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	286	259	0	ENST00000346085.5:c.1487G>A	p.Arg496Lys	p.R496K	ENST00000346085	NM_020732.3	496	aGg/aAg					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97887445	97887445	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	191	356	0	ENST00000289081.3:c.919G>T	p.Gly307Trp	p.G307W	ENST00000289081	NM_000136.2	307	Ggg/Tgg					NEWRECORD																																																																									
EED	0	MSKCC	GRCh37	11	85975268	85975268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	219	415	0	ENST00000263360.6:c.689G>A	p.Gly230Glu	p.G230E	ENST00000263360	NM_003797.3	230	gGa/gAa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108198467	108198467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	26	286	1	ENST00000278616.4:c.7071G>A	p.Met2357Ile	p.M2357I	ENST00000278616	NM_000051.3	2357	atG/atA					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118374549	118374549	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	53	372	0	ENST00000534358.1:c.7942A>C	p.Ile2648Leu	p.I2648L	ENST00000534358	NM_005933.3	2648	Att/Ctt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46125036	46125036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	189	311	0	ENST00000334344.6:c.223G>A	p.Glu75Lys	p.E75K	ENST00000334344	NM_152641.2	75	Gag/Aag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914851	32914851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	292	572	0	ENST00000380152.3:c.6359C>T	p.Ser2120Leu	p.S2120L	ENST00000380152		2120	tCa/tTa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954351	48954351	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	107	188	0	ENST00000267163.4:c.1472T>C	p.Leu491Pro	p.L491P	ENST00000267163	NM_000321.2	491	cTt/cCt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42003429	42003429	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	501	598	0	ENST00000219905.7:c.2966C>G	p.Ser989Cys	p.S989C	ENST00000219905	NM_001164273.1	989	tCt/tGt					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91304065	91304065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	47	417	0	ENST00000355112.3:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000355112	NM_000057.2	488	Gaa/Aaa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556111	29556111	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	92	156	0	ENST00000358273.4:c.2478A>G	p.Ile826Met	p.I826M	ENST00000358273	NM_001042492.2	826	atA/atG					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29576112	29576112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	174	360	0	ENST00000358273.4:c.4085G>A	p.Arg1362Gln	p.R1362Q	ENST00000358273	NM_001042492.2	1362	cGa/cAa					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38504676	38504676	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	282	348	0	ENST00000254066.5:c.287C>T	p.Ser96Leu	p.S96L	ENST00000254066	NM_000964.3	96	tCa/tTa					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41228517	41228517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	187	353	1	ENST00000357654.3:c.4472C>T	p.Pro1491Leu	p.P1491L	ENST00000357654	NM_007294.3	1491	cCa/cTa					NEWRECORD																																																																									
CALR	0	MSKCC	GRCh37	19	13051159	13051159	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199565419		P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	515	587	1	ENST00000316448.5:c.595G>A	p.Asp199Asn	p.D199N	ENST00000316448	NM_004343.3	199	Gat/Aat					NEWRECORD																																																																									
DNAJB1	0	MSKCC	GRCh37	19	14627600	14627600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	419	431	0	ENST00000254322.2:c.470G>A	p.Arg157Gln	p.R157Q	ENST00000254322	NM_006145.1	157	cGa/cAa					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41743954	41743954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	433	489	0	ENST00000301178.4:c.889G>A	p.Gly297Ser	p.G297S	ENST00000301178	NM_021913.4	297	Ggc/Agc					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45867584	45867584	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	305	357	0	ENST00000391945.4:c.724G>T	p.Val242Phe	p.V242F	ENST00000391945	NM_000400.3	242	Gtc/Ttc					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123224615	123224615	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	182	250	0	ENST00000218089.9:c.3467+1G>T		p.X1156_splice	ENST00000218089	NM_001042749.1	1156						NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105844	27105867	+	inframe_deletion	In_Frame_Del	DEL	AAGAATGATCCATTTGTGGTGGAC	AAGAATGATCCATTTGTGGTGGAC	-			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	281	448	0	ENST00000324856.7:c.5455_5478del	p.Lys1819_Asp1826del	p.K1819_D1826del	ENST00000324856	NM_006015.4	1819	AAGAATGATCCATTTGTGGTGGAC/-					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70360789	70360793	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAGGT	AAGGT	-			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	55	158	0	ENST00000373644.4:c.1968_1968+4del		p.X656_splice	ENST00000373644	NM_030625.2	656						NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41569702	41569711	+	frameshift_variant	Frame_Shift_Del	DEL	AGGGGCAACA	AGGGGCAACA	-			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	228	532	1	ENST00000263253.7:c.4695_4704del	p.Gly1566ArgfsTer29	p.G1566Rfs*29	ENST00000263253	NM_001429.3	1565	AGGGGCAACAag/ag					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225368453	225368467	+	inframe_deletion	In_Frame_Del	DEL	ATAACGTTCAAATAC	ATAACGTTCAAATAC	-			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	25	273	0	ENST00000264414.4:c.1279_1293del	p.Val427_Tyr431del	p.V427_Y431del	ENST00000264414	NM_003590.4	427	GTATTTGAACGTTAT/-					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86564565	86564588	+	inframe_deletion	In_Frame_Del	DEL	TGCTGGCGTGGCCGGTGCTGCTGT	TGCTGGCGTGGCCGGTGCTGCTGT	-			P-0006015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	189	367	0	ENST00000274376.6:c.303_326delCGTGGCCGGTGCTGCTGTTGCTGG	p.Val102_Gly109del	p.V102_G109del	ENST00000274376	NM_002890.2	99	gcTGCTGGCGTGGCCGGTGCTGCTGTt/gct					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25463242	25463242	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	181	667	0	ENST00000264709.3:c.2251T>G	p.Phe751Val	p.F751V	ENST00000264709	NM_175629.2	751	Ttc/Gtc					NEWRECORD																																																																									
CCND3	0	MSKCC	GRCh37	6	41903755	41903755	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	180	525	0	ENST00000372991.4:c.802A>G	p.Lys268Glu	p.K268E	ENST00000372991	NM_001760.3	268	Aaa/Gaa					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	432764	432764	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0005262-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	88	461	0	ENST00000399788.2:c.2150+2T>C		p.X717_splice	ENST00000399788	NM_001042603.1	717						NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	454	519	1	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220622	1220622	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	934	392	3	ENST00000326873.7:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000326873	NM_000455.4	214	Cag/Tag					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70406220	70406220	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	368	412	0	ENST00000373644.4:c.3734A>T	p.Gln1245Leu	p.Q1245L	ENST00000373644	NM_030625.2	1245	cAg/cTg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431428	49431428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	425	448	0	ENST00000301067.7:c.9711G>T	p.Glu3237Asp	p.E3237D	ENST00000301067	NM_003482.3	3237	gaG/gaT					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602620	10602692	+	frameshift_variant	Frame_Shift_Del	DEL	GGCAGGGCATCACCTGCGTGGGCTTGTGCAGGGTGAGCTCCTCGAAGATCTTGACCAGGTAGTCCTTGCAGCG	GGCAGGGCATCACCTGCGTGGGCTTGTGCAGGGTGAGCTCCTCGAAGATCTTGACCAGGTAGTCCTTGCAGCG	AGC			P-0007234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	609	367	0	ENST00000171111.5:c.886_958delinsGCT	p.Arg296AlafsTer9	p.R296Afs*9	ENST00000171111	NM_203500.1	296	CGCTGCAAGGACTACCTGGTCAAGATCTTCGAGGAGCTCACCCTGCACAAGCCCACGCAGGTGATGCCCTGCCgg/GCTgg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0009423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	345	389	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009423-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	200	322	0	ENST00000269305.4:c.487T>G	p.Tyr163Asp	p.Y163D	ENST00000269305	NM_001126112.2	163	Tac/Gac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	142	555	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	480	493	1	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115109889	115109889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	44	124	0	ENST00000257566.3:c.1989G>T	p.Met663Ile	p.M663I	ENST00000257566	NM_016569.3	663	atG/atT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	261	522	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
BCL2L11	0	MSKCC	GRCh37	2	111907692	111907692	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	253	726	1	ENST00000393256.3:c.466G>T	p.Gly156Ter	p.G156*	ENST00000393256	NM_006538.4	156	Gga/Tga					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71027114	71027114	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	243	415	0	ENST00000318789.4:c.1213C>A	p.His405Asn	p.H405N	ENST00000318789	NM_032682.5	405	Cat/Aat					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138201337	138201337	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs140610274		P-0008732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	72	366	0	ENST00000237289.4:c.2036T>C	p.Ile679Thr	p.I679T	ENST00000237289	NM_001270507.1	679	aTt/aCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	249	387	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa					NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	133	502	1	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202131428	202131428	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	116	352	0	ENST00000358485.4:c.396T>G	p.Asp132Glu	p.D132E	ENST00000358485	NM_001080125.1	132	gaT/gaG					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38949871	38949871	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	78	407	0	ENST00000357387.3:c.4079T>G	p.Phe1360Cys	p.F1360C	ENST00000357387	NM_152756.3	1360	tTt/tGt					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87482295	87482295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	97	444	0	ENST00000277120.3:c.1582G>A	p.Glu528Lys	p.E528K	ENST00000277120		528	Gaa/Aaa					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865725	57865725	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149870317		P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	176	579	0	ENST00000228682.2:c.3202C>T	p.Arg1068Trp	p.R1068W	ENST00000228682	NM_005269.2	1068	Cgg/Tgg					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562321	21562321	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	84	208	0	ENST00000382592.4:c.1598T>C	p.Leu533Pro	p.L533P	ENST00000382592	NM_014572.2	533	cTg/cCg					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54961553	54961553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	73	300	0	ENST00000312783.6:c.79G>A	p.Val27Met	p.V27M	ENST00000312783	NM_198436.1	27	Gtg/Atg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76891508	76891508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	109	492	0	ENST00000373344.5:c.4597A>G	p.Ile1533Val	p.I1533V	ENST00000373344	NM_000489.3	1533	Ata/Gta					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123190042	123190042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	84	450	0	ENST00000218089.9:c.1261C>T	p.His421Tyr	p.H421Y	ENST00000218089	NM_001042749.1	421	Cac/Tac					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	396417	396421	+	missense_variant	Missense_Mutation	ONP	CTTAA	CTTAA	ATTTT			P-0009249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	243	435	0	ENST00000262320.3:c.605_609delinsAAAAT	p.Leu202_Lys203delinsGlnAsn	p.L202_K203delinsQN	ENST00000262320	NM_003502.3	202	cTTAAG/cAAAAT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	82	617	3	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12013737	12013737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	59	506	0	ENST00000353533.5:c.679C>G	p.His227Asp	p.H227D	ENST00000353533	NM_003010.3	227	Cac/Gac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	413	472	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	321	305	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15272105	15272105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	61	169	0	ENST00000263388.2:c.6334G>A	p.Gly2112Ser	p.G2112S	ENST00000263388	NM_000435.2	2112	Ggt/Agt					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47424198	47424198	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	297	513	1	ENST00000377045.4:c.203G>A	p.Arg68Gln	p.R68Q	ENST00000377045	NM_001654.4	68	cGa/cAa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178088	112178088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	504	518	0	ENST00000257430.4:c.6797C>T	p.Thr2266Ile	p.T2266I	ENST00000257430	NM_000038.5	2266	aCa/aTa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47142982	47142982	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	60	593	0	ENST00000409792.3:c.4981G>C	p.Glu1661Gln	p.E1661Q	ENST00000409792	NM_014159.6	1661	Gag/Cag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685268	89685268	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0008005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	65	227	0	ENST00000371953.3:c.165-2A>C		p.X55_splice	ENST00000371953	NM_000314.4	55						NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	739803	739803	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	76	604	0	ENST00000314574.4:c.1069T>A	p.Leu357Ile	p.L357I	ENST00000314574	NM_005433.3	357	Tta/Ata					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183765	10183770	+	inframe_deletion	In_Frame_Del	DEL	TCGCAG	TCGCAG	-			P-0008005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	30	371	0	ENST00000256474.2:c.236_241del	p.Arg79_Ser80del	p.R79_S80del	ENST00000256474	NM_000551.3	78	aaTCGCAGt/aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004980-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	26	477	2	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	85	261	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	44	406	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25966913	25966913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	81	396	0	ENST00000435504.4:c.2293C>T	p.Pro765Ser	p.P765S	ENST00000435504		765	Cct/Tct					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111885834	111885847	+	frameshift_variant	Frame_Shift_Del	DEL	TCAGAGTCCCTTCC	TCAGAGTCCCTTCC	-			P-0005671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	251	781	1	ENST00000341259.2:c.1459_1472del	p.Glu487LeufsTer11	p.E487Lfs*11	ENST00000341259	NM_005475.2	486	TCAGAGTCCCTTCCt/t					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101331	27101331	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	74	401	0	ENST00000324856.7:c.4615del	p.Ala1539ProfsTer26	p.A1539Pfs*26	ENST00000324856	NM_006015.4	1538	aGg/ag					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118343390	118343390	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	140	296	0	ENST00000534358.1:c.1516del	p.Thr506ProfsTer61	p.T506Pfs*61	ENST00000534358	NM_005933.3	506	Acc/cc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27107088	27107094	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGCC	GGCTGCC	CG			P-0005671-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	53	229	0	ENST00000324856.7:c.6699_6705delinsCG	p.Ala2235ArgfsTer41	p.A2235Rfs*41	ENST00000324856	NM_006015.4	2233	cgGGCTGCC/cgCG					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	202	399	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	488	559	2	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175595	112175595	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	400	544	0	ENST00000257430.4:c.4304del	p.Arg1435LysfsTer38	p.R1435Kfs*38	ENST00000257430	NM_000038.5	1435	aGa/aa					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120612013	120612014	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0006225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	19	63	1	ENST00000256646.2:c.7_8delinsTT	p.Ala3Phe	p.A3F	ENST00000256646	NM_024408.3	3	GCc/TTc					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100998492	100998492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	142	250	0	ENST00000325455.5:c.1310C>T	p.Ala437Val	p.A437V	ENST00000325455	NM_001202474.3	437	gCg/gTg					NEWRECORD																																																																									
SMARCD1	0	MSKCC	GRCh37	12	50483983	50484303	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CAGCTAACTAGCTTCATCCCCTATACTTTGGTTCCCTGCAGCCTCCCCAGTTTAAATTAGACCCCCGCCTAGCTCGACTCCTGGGCATCCATACCCAGACTCGTCCAGTGATCATCCAAGCACTGTGGCAATATATTAAGACACATAAGCTCCAGGACCCTCACGAGCGGGAGTTTGTCATCTGTGACAAGTACCTGCAGCAGGTAAGTAATGGACCCATTCTTTTGCTAGAATCCATTAGAACACTAGTTATGCTCAAACTGCTAACCTCGTGCTTCTCCCCTTTGCTACAGATCTTTGAGTCTCAACGTATGAAGTTTT	CAGCTAACTAGCTTCATCCCCTATACTTTGGTTCCCTGCAGCCTCCCCAGTTTAAATTAGACCCCCGCCTAGCTCGACTCCTGGGCATCCATACCCAGACTCGTCCAGTGATCATCCAAGCACTGTGGCAATATATTAAGACACATAAGCTCCAGGACCCTCACGAGCGGGAGTTTGTCATCTGTGACAAGTACCTGCAGCAGGTAAGTAATGGACCCATTCTTTTGCTAGAATCCATTAGAACACTAGTTATGCTCAAACTGCTAACCTCGTGCTTCTCCCCTTTGCTACAGATCTTTGAGTCTCAACGTATGAAGTTTT	-			P-0006225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	61	214	0	ENST00000394963.4:c.874-38_1066del		p.X292_splice	ENST00000394963	NM_003076.4	292						NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183739	10183739	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs5030802		P-0009683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	90	458	0	ENST00000256474.2:c.208G>T	p.Glu70Ter	p.E70*	ENST00000256474	NM_000551.3	70	Gag/Tag					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90967593	90967593	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	167	522	2	ENST00000265433.3:c.1315A>G	p.Ile439Val	p.I439V	ENST00000265433	NM_002485.4	439	Ata/Gta					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37876088	37876088	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0009683-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	132	573	0	ENST00000269571.5:c.1946+1G>T		p.X649_splice	ENST00000269571		649						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	231	250	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0005335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	202	333	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678508	88678508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183806623		P-0005335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	88	303	0	ENST00000360948.2:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000360948	NM_001012338.2	343	cGg/cAg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120462059	120462059	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	110	323	0	ENST00000256646.2:c.5657G>A	p.Arg1886His	p.R1886H	ENST00000256646	NM_024408.3	1886	cGc/cAc					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39755660	39755660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005335-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	117	399	1	ENST00000288319.7:c.1105C>T	p.Leu369Phe	p.L369F	ENST00000288319	NM_182918.3	369	Ctc/Ttc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	38	393	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	205	344	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	594	332	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578556	7578556	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C	rs786202799		P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	199	250	0	ENST00000269305.4:c.376-2A>G		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187540459	187540459	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	83	215	0	ENST00000441802.2:c.7281T>G	p.Tyr2427Ter	p.Y2427*	ENST00000441802	NM_005245.3	2427	taT/taG					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81954819	81954819	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	254	489	1	ENST00000359376.3:c.2252C>T	p.Ser751Phe	p.S751F	ENST00000359376	NM_002661.3	751	tCc/tTc					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81954866	81954866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1476	380	597	2	ENST00000359376.3:c.2299C>T	p.Pro767Ser	p.P767S	ENST00000359376	NM_002661.3	767	Ccg/Tcg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941669	48941669	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	130	350	0	ENST00000267163.4:c.983del	p.Asn328IlefsTer4	p.N328Ifs*4	ENST00000267163	NM_000321.2	327	Aaa/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	137	385	1	ENST00000269305.4:c.782+1G>A		p.X261_splice	ENST00000269305	NM_001126112.2	261						NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108181016	108181016	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	25	318	0	ENST00000278616.4:c.5892G>C	p.Lys1964Asn	p.K1964N	ENST00000278616	NM_000051.3	1964	aaG/aaC					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2226243	2226243	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	99	516	1	ENST00000398665.3:c.3723G>T	p.Trp1241Cys	p.W1241C	ENST00000398665	NM_032482.2	1241	tgG/tgT					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117878846	117878849	+	frameshift_variant	Frame_Shift_Del	DEL	CACG	CACG	-			P-0007233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	66	681	0	ENST00000297338.2:c.120_123del	p.Ser40ArgfsTer9	p.S40Rfs*9	ENST00000297338	NM_006265.2	40	agCGTG/ag					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191493	10191493	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004813-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			325	244	670	0	ENST00000256474.2:c.486C>A	p.Cys162Ter	p.C162*	ENST00000256474	NM_000551.3	162	tgC/tgA					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47147552	47147552	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0004813-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			229	157	470	0	ENST00000409792.3:c.4774C>T	p.Arg1592Ter	p.R1592*	ENST00000409792	NM_014159.6	1592	Cga/Tga					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151845145	151845145	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004813-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			839	343	930	1	ENST00000262189.6:c.13867C>A	p.Leu4623Met	p.L4623M	ENST00000262189	NM_170606.2	4623	Ctg/Atg					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53243870	53243870	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004813-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			284	424	605	0	ENST00000375401.3:c.1122+1G>A		p.X374_splice	ENST00000375401	NM_004187.3	374						NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212566749	212566749	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	105	446	0	ENST00000342788.4:c.1432T>G	p.Phe478Val	p.F478V	ENST00000342788	NM_005235.2	478	Ttc/Gtc					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149457676	149457676	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0004819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	130	488	0	ENST00000286301.3:c.728A>G	p.Lys243Arg	p.K243R	ENST00000286301	NM_005211.3	243	aAg/aGg					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161781122	161781122	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0004819-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1283	137	475	3	ENST00000366898.1:c.1283delA	p.Asn428MetfsTer7	p.N428Mfs*7	ENST00000366898	NM_004562.2	428	aAt/at					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	208	323	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	674	334	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0007686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	302	364	2	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206650063	206650063	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1206	80	283	1	ENST00000367120.3:c.583C>A	p.Gln195Lys	p.Q195K	ENST00000367120	NM_014002.3	195	Caa/Aaa					NEWRECORD																																																																									
HIST1H3J	0	MSKCC	GRCh37	6	27858566	27858566	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	275	491	0	ENST00000359303.2:c.5C>A	p.Ala2Asp	p.A2D	ENST00000359303	NM_003535.2	2	gCc/gAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	142	597	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0005833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	144	497	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115256528	115256528	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	416	599	0	ENST00000369535.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000369535	NM_002524.4	61	caA/caC					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562378	21562378	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	89	465	0	ENST00000382592.4:c.1541C>T	p.Pro514Leu	p.P514L	ENST00000382592	NM_014572.2	514	cCg/cTg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175184	112175194	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCTAATACC	CTGCTAATACC	-			P-0005833-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	91	324	0	ENST00000257430.4:c.3897_3907del	p.Thr1301SerfsTer10	p.T1301Sfs*10	ENST00000257430	NM_000038.5	1298	tCTGCTAATACC/t					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	145	429	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	186	717	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	96	443	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696716	47696716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	99	404	1	ENST00000347630.2:c.232G>A	p.Glu78Lys	p.E78K	ENST00000347630	NM_001007230.1	78	Gaa/Aaa					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150550806	150550806	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs142581495		P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	79	267	0	ENST00000369026.2:c.850G>C	p.Glu284Gln	p.E284Q	ENST00000369026	NM_021960.4	284	Gaa/Caa					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176518761	176518761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	76	410	0	ENST00000292408.4:c.679G>C	p.Glu227Gln	p.E227Q	ENST00000292408	NM_213647.1	227	Gag/Cag					NEWRECORD																																																																									
PNRC1	0	MSKCC	GRCh37	6	89793517	89793517	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	88	308	0	ENST00000336032.3:c.586C>G	p.His196Asp	p.H196D	ENST00000336032	NM_006813.2	196	Cat/Gat					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91292938	91292938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	104	289	0	ENST00000355112.3:c.440C>T	p.Ser147Phe	p.S147F	ENST00000355112	NM_000057.2	147	tCt/tTt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72827361	72827361	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	399	657	0	ENST00000268489.5:c.9220C>T	p.Gln3074Ter	p.Q3074*	ENST00000268489	NM_006885.3	3074	Cag/Tag					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68862165	68862165	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	241	447	0	ENST00000261769.5:c.2253del	p.Asn751LysfsTer19	p.N751Kfs*19	ENST00000261769	NM_004360.3	751	aaC/aa					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	24	263	1				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781032	135781032	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1306	125	996	1	ENST00000298552.3:c.1933C>T	p.Pro645Ser	p.P645S	ENST00000298552	NM_001162426.1	645	Cca/Tca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577073	7577073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	62	497	0	ENST00000269305.4:c.865C>T	p.Leu289Phe	p.L289F	ENST00000269305	NM_001126112.2	289	Ctc/Ttc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974713	21974713	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	30	399	0	ENST00000304494.5:c.114delC	p.Asn39ThrfsTer14	p.N39Tfs*14	ENST00000304494	NM_000077.4	38	ccC/cc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974713	21974713	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	30	399	0	ENST00000304494.5:c.114delC	p.Asn39ThrfsTer14	p.N39Tfs*14	ENST00000304494	NM_000077.4	38	ccC/cc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44922871	44922871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	54	358	0	ENST00000377967.4:c.1732C>T	p.Pro578Ser	p.P578S	ENST00000377967	NM_021140.2	578	Ccc/Tcc					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162745541	162745541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	82	543	0	ENST00000367921.3:c.1956G>A	p.Met652Ile	p.M652I	ENST00000367921	NM_006182.2	652	atG/atA					NEWRECORD																																																																									
EPCAM	0	MSKCC	GRCh37	2	47601015	47601015	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	37	494	0	ENST00000263735.4:c.253G>A	p.Glu85Lys	p.E85K	ENST00000263735	NM_002354.2	85	Gaa/Aaa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188932	32188932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	62	658	0	ENST00000375023.3:c.622G>A	p.Gly208Ser	p.G208S	ENST00000375023	NM_004557.3	208	Ggc/Agc					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128846196	128846196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	52	584	0	ENST00000249373.3:c.1126C>T	p.Leu376Phe	p.L376F	ENST00000249373	NM_005631.4	376	Ctt/Ttt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151849948	151849948	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	45	436	0	ENST00000262189.6:c.12368C>T	p.Ser4123Phe	p.S4123F	ENST00000262189	NM_170606.2	4123	tCc/tTc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412376	139412376	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	41	271	0	ENST00000277541.6:c.1269C>G	p.Cys423Trp	p.C423W	ENST00000277541	NM_017617.3	423	tgC/tgG					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43612102	43612102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	64	737	2	ENST00000355710.3:c.2207G>A	p.Gly736Glu	p.G736E	ENST00000355710	NM_020975.4	736	gGa/gAa					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69233216	69233216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	59	761	2	ENST00000462284.1:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000462284	NM_002392.5	361	Gag/Aag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10274174	10274174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	21	287	0	ENST00000330684.3:c.95C>T	p.Pro32Leu	p.P32L	ENST00000330684	NM_001134407.1	32	cCc/cTc					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89347143	89347143	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	46	614	1	ENST00000301030.4:c.5807A>T	p.Glu1936Val	p.E1936V	ENST00000301030	NM_001256183.1	1936	gAg/gTg					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40489597	40489597	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	78	835	0	ENST00000264657.5:c.653T>G	p.Val218Gly	p.V218G	ENST00000264657	NM_139276.2	218	gTg/gGg					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41246599	41246599	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	47	638	0	ENST00000357654.3:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000357654	NM_007294.3	317	Caa/Taa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098483	11098483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	24	218	0	ENST00000344626.4:c.1001G>A	p.Gly334Glu	p.G334E	ENST00000344626	NM_003072.3	334	gGg/gAg					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50910345	50910345	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	78	856	1	ENST00000440232.2:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000440232	NM_002691.3	534	Gag/Aag					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52719849	52719849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	67	667	0	ENST00000322088.6:c.1061C>T	p.Pro354Leu	p.P354L	ENST00000322088	NM_014225.5	354	cCc/cTc					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31021448	31021448	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	34	405	1	ENST00000375687.4:c.1447G>T	p.Val483Phe	p.V483F	ENST00000375687	NM_015338.5	483	Gtt/Ttt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577070	7577073	+	frameshift_variant	Frame_Shift_Del	DEL	GGAG	GGAG	AAA			P-0008358-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	60	489	0	ENST00000269305.4:c.865_868delinsTTT	p.Leu289PhefsTer56	p.L289Ffs*56	ENST00000269305	NM_001126112.2	289	CTCCgc/TTTgc					NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	133	598	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162724541	162724541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	260	631	4	ENST00000367921.3:c.313C>T	p.Arg105Cys	p.R105C	ENST00000367921	NM_006182.2	105	Cgc/Tgc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143084	30143084	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	154	807	0	ENST00000389048.3:c.442G>T	p.Glu148Ter	p.E148*	ENST00000389048	NM_004304.4	148	Gag/Tag					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142188966	142188966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	352	742	1	ENST00000350721.4:c.6281G>T	p.Trp2094Leu	p.W2094L	ENST00000350721	NM_001184.3	2094	tGg/tTg					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176520195	176520195	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	265	693	0	ENST00000292408.4:c.1114C>G	p.Leu372Val	p.L372V	ENST00000292408	NM_213647.1	372	Ctg/Gtg					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30680152	30680152	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	147	742	1	ENST00000376406.3:c.1567A>T	p.Thr523Ser	p.T523S	ENST00000376406	NM_014641.2	523	Aca/Tca					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188811	32188811	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	132	622	0	ENST00000375023.3:c.743C>A	p.Thr248Asn	p.T248N	ENST00000375023	NM_004557.3	248	aCc/aAc					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120731	94120731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	367	1075	0	ENST00000369303.4:c.320G>C	p.Arg107Thr	p.R107T	ENST00000369303	NM_004440.3	107	aGg/aCg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2963873	2963873	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	113	790	0	ENST00000396946.4:c.1934T>C	p.Leu645Pro	p.L645P	ENST00000396946	NM_032415.4	645	cTg/cCg					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128845126	128845126	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	236	866	0	ENST00000249373.3:c.620A>T	p.Tyr207Phe	p.Y207F	ENST00000249373	NM_005631.4	207	tAc/tTc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151864349	151864349	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	299	741	0	ENST00000262189.6:c.9632C>G	p.Ala3211Gly	p.A3211G	ENST00000262189	NM_170606.2	3211	gCc/gGc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344135	118344135	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	45	533	0	ENST00000534358.1:c.2261C>A	p.Ser754Tyr	p.S754Y	ENST00000534358	NM_005933.3	754	tCc/tAc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42052623	42052623	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	458	1084	0	ENST00000219905.7:c.7294G>T	p.Glu2432Ter	p.E2432*	ENST00000219905	NM_001164273.1	2432	Gag/Tag					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15964940	15964940	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	327	861	1	ENST00000268712.3:c.5656G>T	p.Ala1886Ser	p.A1886S	ENST00000268712	NM_006311.3	1886	Gcc/Tcc					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52705282	52705282	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	59	631	0	ENST00000322088.6:c.164T>G	p.Leu55Arg	p.L55R	ENST00000322088	NM_014225.5	55	cTt/cGt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40727065	40727065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	217	555	0	ENST00000373198.4:c.3899C>G	p.Ala1300Gly	p.A1300G	ENST00000373198	NM_133170.3	1300	gCc/gGc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39932317	39932317	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	178	1143	1	ENST00000378444.4:c.2282G>T	p.Arg761Leu	p.R761L	ENST00000378444	NM_001123385.1	761	cGg/cTg					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410038	63410038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	253	824	0	ENST00000330258.3:c.3129C>A	p.Ser1043Arg	p.S1043R	ENST00000330258	NM_152424.3	1043	agC/agA					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66937366	66937366	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	228	991	0	ENST00000374690.3:c.2220C>A	p.Tyr740Ter	p.Y740*	ENST00000374690	NM_000044.3	740	taC/taA					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76909658	76909658	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	244	1014	1	ENST00000373344.5:c.4247A>G	p.Gln1416Arg	p.Q1416R	ENST00000373344	NM_000489.3	1416	cAg/cGg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937372	76937372	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	166	809	0	ENST00000373344.5:c.3376G>C	p.Asp1126His	p.D1126H	ENST00000373344	NM_000489.3	1126	Gat/Cat					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579433	7579433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1064793279		P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	222	614	0	ENST00000269305.4:c.254del	p.Pro85LeufsTer38	p.P85Lfs*38	ENST00000269305	NM_001126112.2	85	cCt/ct					NEWRECORD																																																																									
HOXB13	0	MSKCC	GRCh37	17	46805608	46805608	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009764-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	420	1219	0	ENST00000290295.7:c.348del	p.Glu118LysfsTer161	p.E118Kfs*161	ENST00000290295	NM_006361.5	116	gcC/gc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5221018	5221018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	36	238	0	ENST00000357368.4:c.3448C>T	p.Pro1150Ser	p.P1150S	ENST00000357368	NM_002850.3	1150	Cct/Tct					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212295774	212295774	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	48	354	1	ENST00000342788.4:c.2539C>T	p.Arg847Cys	p.R847C	ENST00000342788	NM_005235.2	847	Cgt/Tgt					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36988340	36988340	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	28	97	0	ENST00000354822.5:c.313del	p.Val105CysfsTer20	p.V105Cfs*20	ENST00000354822	NM_001079668.2	105	Gtg/tg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576924	7576928	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GTGCT	GTGCT	CC			P-0009963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	55	303	0	ENST00000269305.4:c.920-2_922delinsGG		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	60	150	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46230707	46230707	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	241	384	0	ENST00000334344.6:c.956C>T	p.Ser319Phe	p.S319F	ENST00000334344	NM_152641.2	319	tCt/tTt					NEWRECORD																																																																									
GREM1	0	MSKCC	GRCh37	15	33023323	33023323	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1216	236	539	1	ENST00000300177.4:c.432C>G	p.Cys144Trp	p.C144W	ENST00000300177	NM_001191322.1	144	tgC/tgG					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3831239	3831239	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	130	320	0	ENST00000262367.5:c.1642G>A	p.Glu548Lys	p.E548K	ENST00000262367	NM_004380.2	548	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578416	7578416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	244	293	0	ENST00000269305.4:c.514G>T	p.Val172Phe	p.V172F	ENST00000269305	NM_001126112.2	172	Gtt/Ttt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610405	10610405	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	199	354	0	ENST00000171111.5:c.305C>T	p.Ser102Leu	p.S102L	ENST00000171111	NM_203500.1	102	tCa/tTa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70354945	70354945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	91	413	0	ENST00000374080.3:c.4867G>C	p.Glu1623Gln	p.E1623Q	ENST00000374080		1623	Gag/Cag					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46230438	46230438	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	314	381	0	ENST00000334344.6:c.772G>T	p.Glu258Ter	p.E258*	ENST00000334344	NM_152641.2	258	Gaa/Taa					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128036909	128036909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	238	540	0	ENST00000285398.2:c.1570G>A	p.Ala524Thr	p.A524T	ENST00000285398	NM_000122.1	524	Gca/Aca					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187530972	187530972	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	321	418	0	ENST00000441802.2:c.10051G>C	p.Glu3351Gln	p.E3351Q	ENST00000441802	NM_005245.3	3351	Gag/Cag					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41730035	41730035	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	271	699	0	ENST00000242208.4:c.494A>G	p.Asn165Ser	p.N165S	ENST00000242208	NM_002192.2	165	aAc/aGc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435026	110435026	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	59	150	0	ENST00000375856.3:c.3375G>T	p.Gln1125His	p.Q1125H	ENST00000375856	NM_003749.2	1125	caG/caT					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3807355	3807355	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	89	470	0	ENST00000262367.5:c.3632T>C	p.Leu1211Ser	p.L1211S	ENST00000262367	NM_004380.2	1211	tTg/tCg					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14031657	14031657	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	123	448	0	ENST00000311895.7:c.1846G>A	p.Glu616Lys	p.E616K	ENST00000311895	NM_005236.2	616	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578536	7578536	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	159	318	0	ENST00000269305.4:c.394A>T	p.Lys132Ter	p.K132*	ENST00000269305	NM_001126112.2	132	Aag/Tag					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47030599	47030599	+	intron_variant	Intron	SNP	A	A	T			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	111	428	0	ENST00000329236.7:c.201+1702A>T		p.*67*	ENST00000329236	NM_001204466.1							NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044850	47044850	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	72	287	0	ENST00000329236.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000329236	NM_001204466.1	648	Cga/Tga					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410458	63410458	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	126	632	0	ENST00000330258.3:c.2709G>T	p.Glu903Asp	p.E903D	ENST00000330258	NM_152424.3	903	gaG/gaT					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938442	76938442	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	101	516	0	ENST00000373344.5:c.2306C>G	p.Thr769Ser	p.T769S	ENST00000373344	NM_000489.3	769	aCt/aGt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8465633	8465634	+	stop_gained	Nonsense_Mutation	DNP	CA	CA	AT			P-0005173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	114	484	0	ENST00000356435.5:c.3546_3547delinsAT	p.Tyr1182_Gly1183delinsTer	p.Y1182_G1183delins*	ENST00000356435		1182	taTGgg/taATgg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188297	10188297	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	22	657	0	ENST00000256474.2:c.444delT	p.Phe148LeufsTer11	p.F148Lfs*11	ENST00000256474	NM_000551.3	147	aTt/at					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52663005	52663007	+	inframe_deletion	In_Frame_Del	DEL	ACT	ACT	-			P-0005794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	44	468	0	ENST00000394830.3:c.1346_1348del	p.Glu449_Cys450delinsGly	p.E449_C450delinsG	ENST00000394830	NM_018313.4	449	gAGTgt/ggt					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922862	39922862	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0008657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	246	238	0	ENST00000378444.4:c.3846del	p.Gly1283AlafsTer11	p.G1283Afs*11	ENST00000378444	NM_001123385.1	1282	caA/ca					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	212	479	1	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057877	27057877	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	599	605	0	ENST00000324856.7:c.1585C>T	p.Gln529Ter	p.Q529*	ENST00000324856	NM_006015.4	529	Cag/Tag					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176522642	176522642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	306	564	1	ENST00000292408.4:c.1739G>A	p.Ser580Asn	p.S580N	ENST00000292408	NM_213647.1	580	aGt/aAt					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119167744	119167744	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs144894769		P-0008907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	198	473	1	ENST00000264033.4:c.2153G>A	p.Arg718Gln	p.R718Q	ENST00000264033	NM_005188.3	718	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579523	7579532	+	frameshift_variant	Frame_Shift_Del	DEL	GTGAACCATT	GTGAACCATT	-			P-0008907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	179	372	0	ENST00000269305.4:c.155_164del	p.Gln52LeufsTer68	p.Q52Lfs*68	ENST00000269305	NM_001126112.2	52	cAATGGTTCACt/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0008000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	70	291	1	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32166772	32166772	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	66	287	0	ENST00000375023.3:c.4466G>T	p.Arg1489Leu	p.R1489L	ENST00000375023	NM_004557.3	1489	cGa/cTa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10599913	10599913	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	82	505	1	ENST00000171111.5:c.1663A>T	p.Ser555Cys	p.S555C	ENST00000171111	NM_203500.1	555	Agt/Tgt					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41572342	41572342	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	263	390	0	ENST00000263253.7:c.4871T>A	p.Met1624Lys	p.M1624K	ENST00000263253	NM_001429.3	1624	aTg/aAg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49047524	49047524	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0008000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	62	333	0	ENST00000267163.4:c.2520+1del		p.G840fs	ENST00000267163	NM_000321.2	840	Ggg/gg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	43	264	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578469	7578469	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	55	246	0	ENST00000269305.4:c.461G>T	p.Gly154Val	p.G154V	ENST00000269305	NM_001126112.2	154	gGc/gTc					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87636286	87636286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	59	525	0	ENST00000277120.3:c.2451G>T	p.Lys817Asn	p.K817N	ENST00000277120		817	aaG/aaT					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391706	139391706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	38	301	0	ENST00000277541.6:c.6485G>T	p.Ser2162Ile	p.S2162I	ENST00000277541	NM_017617.3	2162	aGc/aTc					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14014033	14014033	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008576-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	47	248	0	ENST00000311895.7:c.11G>C	p.Gly4Ala	p.G4A	ENST00000311895	NM_005236.2	4	gGg/gCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005999-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	22	428	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098810	178098810	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	788	636	0	ENST00000397062.3:c.235G>C	p.Glu79Gln	p.E79Q	ENST00000397062	NM_006164.4	79	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0007885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	387	251	1	ENST00000269305.4:c.97-1G>T		p.X33_splice	ENST00000269305	NM_001126112.2	33						NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37646923	37646923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1572	283	654	1	ENST00000447079.4:c.2045C>T	p.Pro682Leu	p.P682L	ENST00000447079	NM_015083.1	682	cCc/cTc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89528645	89528645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	295	319	2	ENST00000336596.2:c.2945C>T	p.Pro982Leu	p.P982L	ENST00000336596	NM_005233.5	982	cCc/cTc					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056568	26056568	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	63	142	0	ENST00000343677.2:c.89G>C	p.Gly30Ala	p.G30A	ENST00000343677	NM_005319.3	30	gGt/gCt					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13971174	13971174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	92	389	0	ENST00000405192.2:c.755C>G	p.Pro252Arg	p.P252R	ENST00000405192	NM_001163147.1	252	cCt/cGt					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738669	145738669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	66	232	0	ENST00000428558.2:c.2395G>C	p.Val799Leu	p.V799L	ENST00000428558	NM_004260.3	799	Gtg/Ctg					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625159	69625159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1529	244	372	2	ENST00000334134.2:c.634C>T	p.Arg212Trp	p.R212W	ENST00000334134	NM_005247.2	212	Cgg/Tgg					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411216	63411216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	500	578	1	ENST00000330258.3:c.1951G>A	p.Val651Ile	p.V651I	ENST00000330258	NM_152424.3	651	Gtc/Atc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15281354	15281358	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCG	CAGCG	-			P-0007885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	258	254	0	ENST00000263388.2:c.4898_4902del	p.Pro1633ArgfsTer44	p.P1633Rfs*44	ENST00000263388	NM_000435.2	1633	cCGCTG/c					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0009969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	35	160	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	200	620	1	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0009969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	82	362	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30715624	30715624	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	106	515	3	ENST00000359013.4:c.1357G>T	p.Glu453Ter	p.E453*	ENST00000359013	NM_001024847.2	453	Gaa/Taa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412044	116412044	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0005752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	113	338	0	ENST00000397752.3:c.3028+1G>C		p.X1010_splice	ENST00000397752	NM_000245.2	1010						NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101891367	101891367	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	79	356	1	ENST00000374994.4:c.328G>T	p.Glu110Ter	p.E110*	ENST00000374994	NM_004612.2	110	Gaa/Taa					NEWRECORD																																																																									
BCL2	0	MSKCC	GRCh37	18	60985466	60985466	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1387	81	798	0	ENST00000333681.4:c.434G>A	p.Gly145Glu	p.G145E	ENST00000333681		145	gGg/gAg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123215358	123215358	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	144	313	1	ENST00000218089.9:c.2904A>T	p.Glu968Asp	p.E968D	ENST00000218089	NM_001042749.1	968	gaA/gaT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0009840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	145	494	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123256056	123256056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	139	569	1	ENST00000358487.5:c.1853C>T	p.Ala618Val	p.A618V	ENST00000358487	NM_000141.4	618	gCt/gTt					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562433	21562433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	46	187	0	ENST00000382592.4:c.1486G>A	p.Gly496Ser	p.G496S	ENST00000382592	NM_014572.2	496	Ggc/Agc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	267	496	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410930	63410930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1237	135	639	2	ENST00000330258.3:c.2237C>T	p.Pro746Leu	p.P746L	ENST00000330258	NM_152424.3	746	cCt/cTt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	18	225	1	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	8	230	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa					NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55602664	55602664	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C	rs1057519713		P-0006638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	329	346	0	ENST00000288135.5:c.2485G>C	p.Ala829Pro	p.A829P	ENST00000288135	NM_000222.2	829	Gct/Cct					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593607	55593615	+	inframe_deletion	In_Frame_Del	DEL	AGGTTGTTG	AGGTTGTTG	-			P-0006638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	388	463	0	ENST00000288135.5:c.1676_1684del	p.Val559_Glu561del	p.V559_E561del	ENST00000288135	NM_000222.2	558	aAGGTTGTTGag/aag					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198265533	198265533	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	273	501	0	ENST00000335508.6:c.2624T>C	p.Ile875Thr	p.I875T	ENST00000335508	NM_012433.2	875	aTt/aCt					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2210741	2210741	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	552	505	4	ENST00000398665.3:c.1238G>A	p.Arg413His	p.R413H	ENST00000398665	NM_032482.2	413	cGc/cAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40877352	40877352	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006638-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	374	380	1	ENST00000373198.4:c.2344G>T	p.Gly782Cys	p.G782C	ENST00000373198	NM_133170.3	782	Ggc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	54	285	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242795082	242795082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	47	328	0	ENST00000334409.5:c.127G>A	p.Val43Met	p.V43M	ENST00000334409	NM_005018.2	43	Gtg/Atg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41991139	41991139	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	60	458	0	ENST00000219905.7:c.2092G>A	p.Gly698Ser	p.G698S	ENST00000219905	NM_001164273.1	698	Ggt/Agt					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67482861	67482861	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	87	241	0	ENST00000327367.4:c.1265C>A	p.Ser422Tyr	p.S422Y	ENST00000327367	NM_005902.3	422	tCc/tAc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39913529	39913542	+	frameshift_variant	Frame_Shift_Del	DEL	AAGTCCCAAGTGCC	AAGTCCCAAGTGCC	-			P-0007494-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	86	323	0	ENST00000378444.4:c.4786_4799del	p.Gly1596LeufsTer7	p.G1596Lfs*7	ENST00000378444	NM_001123385.1	1596	GGCACTTGGGACTTc/c					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48936995	48936995	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	612	718	1	ENST00000267163.4:c.763C>T	p.Arg255Ter	p.R255*	ENST00000267163	NM_000321.2	255	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	277	552	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149499590	149499590	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	611	983	1	ENST00000261799.4:c.2683G>T	p.Glu895Ter	p.E895*	ENST00000261799	NM_002609.3	895	Gag/Tag					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55087043	55087043	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	181	464	0	ENST00000275493.2:c.73C>G	p.Leu25Val	p.L25V	ENST00000275493	NM_005228.3	25	Ctg/Gtg					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133729485	133729485	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	318	579	0	ENST00000318560.5:c.114G>C	p.Glu38Asp	p.E38D	ENST00000318560	NM_005157.4	38	gaG/gaC					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42795885	42795886	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0005378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	259	795	3	ENST00000575354.2:c.2874_2875delinsA	p.Ser961AlafsTer6	p.S961Afs*6	ENST00000575354	NM_015125.3	958	caGCcc/caAcc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	148	298	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65305399	65305399	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	252	351	0	ENST00000342505.4:c.2729T>C	p.Leu910Pro	p.L910P	ENST00000342505	NM_002227.2	910	cTg/cCg					NEWRECORD																																																																									
BCL2	0	MSKCC	GRCh37	18	60985853	60985853	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007353-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	252	389	0	ENST00000333681.4:c.47T>A	p.Met16Lys	p.M16K	ENST00000333681		16	aTg/aAg					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176520503	176520503	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs138256705		P-0006187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	116	418	1	ENST00000292408.4:c.1348G>A	p.Val450Met	p.V450M	ENST00000292408	NM_213647.1	450	Gtg/Atg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2953076	2953076	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006187-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	41	379	2	ENST00000396946.4:c.2864G>A	p.Gly955Asp	p.G955D	ENST00000396946	NM_032415.4	955	gGc/gAc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	551	227	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	535	192	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64572194	64572194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	345	241	1	ENST00000337652.1:c.1460G>T	p.Gly487Val	p.G487V	ENST00000337652	NM_130803.2	487	gGc/gTc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108098425	108098425	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0008315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	295	273	0	ENST00000278616.4:c.72+2T>C		p.X24_splice	ENST00000278616	NM_000051.3	24						NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108124552	108124552	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	301	269	0	ENST00000278616.4:c.1914del	p.Asp639IlefsTer10	p.D639Ifs*10	ENST00000278616	NM_000051.3	637	cAa/ca					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	47	273	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	57	398	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0009920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	38	371	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0009920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	40	360	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70450906	70450906	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	39	280	0	ENST00000373644.4:c.5746C>G	p.Pro1916Ala	p.P1916A	ENST00000373644	NM_030625.2	1916	Cct/Gct					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18715636	18715636	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0009920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	47	283	0	ENST00000266497.5:c.3468-1G>T		p.X1156_splice	ENST00000266497		1156						NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922984	39922984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009920-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	59	532	0	ENST00000378444.4:c.3724C>A	p.Gln1242Lys	p.Q1242K	ENST00000378444	NM_001123385.1	1242	Cag/Aag					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	188	364	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	50	455	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	60	451	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50468032	50468032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	102	377	1	ENST00000331340.3:c.1267C>T	p.Arg423Cys	p.R423C	ENST00000331340	NM_006060.4	423	Cgc/Tgc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151855984	151855984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	57	472	1	ENST00000262189.6:c.11634G>A	p.Met3878Ile	p.M3878I	ENST00000262189	NM_170606.2	3878	atG/atA					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57864273	57864273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	51	607	0	ENST00000228682.2:c.1750G>A	p.Ala584Thr	p.A584T	ENST00000228682	NM_005269.2	584	Gcc/Acc					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26975615	26975615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	74	389	2	ENST00000381527.3:c.1123C>T	p.Gln375Ter	p.Q375*	ENST00000381527	NM_001260.1	375	Cag/Tag					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435061	110435061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	49	203	0	ENST00000375856.3:c.3340G>A	p.Val1114Met	p.V1114M	ENST00000375856	NM_003749.2	1114	Gtg/Atg					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99491888	99491888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	146	519	0	ENST00000268035.6:c.3673G>A	p.Val1225Ile	p.V1225I	ENST00000268035	NM_000875.3	1225	Gtc/Atc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29548932	29548932	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	19	209	0	ENST00000358273.4:c.1706C>T	p.Thr569Ile	p.T569I	ENST00000358273	NM_001042492.2	569	aCa/aTa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40770623	40770623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	91	374	0	ENST00000373198.4:c.2759C>A	p.Thr920Lys	p.T920K	ENST00000373198	NM_133170.3	920	aCa/aAa					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412680	63412680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	49	520	0	ENST00000330258.3:c.487C>T	p.Pro163Ser	p.P163S	ENST00000330258	NM_152424.3	163	Ccc/Tcc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939403	76939403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006152-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	115	542	0	ENST00000373344.5:c.1345C>T	p.Pro449Ser	p.P449S	ENST00000373344	NM_000489.3	449	Cct/Tct					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	112	213	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	679	363	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118354937	118354937	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	226	262	0	ENST00000534358.1:c.4126A>T	p.Thr1376Ser	p.T1376S	ENST00000534358	NM_005933.3	1376	Act/Tct					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149500479	149500490	+	inframe_deletion	In_Frame_Del	DEL	CGCATGATGTCT	CGCATGATGTCT	-			P-0005578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	94	367	0	ENST00000261799.4:c.2547_2558del	p.Ile851_Asp854del	p.I851_D854del	ENST00000261799	NM_002609.3	849	cgAGACATCATGCGg/cgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577130	7577130	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	135	470	0	ENST00000269305.4:c.808T>C	p.Phe270Leu	p.F270L	ENST00000269305	NM_001126112.2	270	Ttt/Ctt					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58144515	58144515	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	105	389	0	ENST00000257904.6:c.556C>G	p.Leu186Val	p.L186V	ENST00000257904	NM_000075.3	186	Ctt/Gtt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	149	442	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	90	275	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18524215	18524215	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	90	510	2	ENST00000266497.5:c.1727C>T	p.Ala576Val	p.A576V	ENST00000266497		576	gCg/gTg					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70008501	70008501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147148433		P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	57	349	0	ENST00000352241.4:c.1091G>A	p.Arg364His	p.R364H	ENST00000352241	NM_198159.2	364	cGc/cAc					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46205200	46205200	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	89	316	0	ENST00000334344.6:c.285-1G>C		p.X95_splice	ENST00000334344	NM_152641.2	95						NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11984702	11984702	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	33	125	0	ENST00000353533.5:c.248C>A	p.Ser83Ter	p.S83*	ENST00000353533	NM_003010.3	83	tCa/tAa					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31395668	31395668	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	55	361	0	ENST00000328111.2:c.2521C>A	p.His841Asn	p.H841N	ENST00000328111	NM_006892.3	841	Cac/Aac					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	82	429	0	ENST00000349496.5:c.98C>A	p.Ser33Tyr	p.S33Y	ENST00000349496	NM_001904.3	33	tCt/tAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0006344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	97	380	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105243048	105243048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	301	496	0	ENST00000349310.3:c.235C>A	p.Gln79Lys	p.Q79K	ENST00000349310	NM_001014432.1	79	Cag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27107095	27107096	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0006344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	59	224	0	ENST00000324856.7:c.6711_6712delGC	p.Leu2238AlafsTer39	p.L2238Afs*39	ENST00000324856	NM_006015.4	2236	CGc/c					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139399351	139399351	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	8	354	1	ENST00000277541.6:c.4792C>T	p.Arg1598Cys	p.R1598C	ENST00000277541	NM_017617.3	1598	Cgc/Tgc					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43617397	43617397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	11	455	0	ENST00000355710.3:c.2734C>T	p.Arg912Trp	p.R912W	ENST00000355710	NM_020975.4	912	Cgg/Tgg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099084	27099088	+	frameshift_variant	Frame_Shift_Del	DEL	CCACA	CCACA	-			P-0006344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	131	486	1	ENST00000324856.7:c.3506_3510delCACAC	p.Pro1169GlnfsTer22	p.P1169Qfs*22	ENST00000324856	NM_006015.4	1167	tCCACA/t					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645140	67645140	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	127	398	0	ENST00000264010.4:c.409delG	p.Ala137LeufsTer17	p.A137Lfs*17	ENST00000264010	NM_006565.3	135	caG/ca					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	498	368	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26959351	26959351	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	409	238	0	ENST00000381527.3:c.518A>G	p.Asp173Gly	p.D173G	ENST00000381527	NM_001260.1	173	gAc/gGc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11181368	11181368	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	308	436	0	ENST00000361445.4:c.6868G>A	p.Ala2290Thr	p.A2290T	ENST00000361445	NM_004958.3	2290	Gcc/Acc					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23538913	23538913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	337	435	1	ENST00000380871.4:c.526C>T	p.Arg176Cys	p.R176C	ENST00000380871	NM_006167.3	176	Cgc/Tgc					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114903773	114903773	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	776	524	0	ENST00000543371.1:c.777G>A	p.Trp259Ter	p.W259*	ENST00000543371	NM_001198531.1	259	tgG/tgA					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72829302	72829302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	477	686	1	ENST00000268489.5:c.7279G>A	p.Asp2427Asn	p.D2427N	ENST00000268489	NM_006885.3	2427	Gat/Aat					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15303242	15303242	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	328	462	0	ENST00000263388.2:c.286T>A	p.Ser96Thr	p.S96T	ENST00000263388	NM_000435.2	96	Tca/Aca					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70342711	70342711	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	234	248	0	ENST00000374080.3:c.1472A>C	p.Lys491Thr	p.K491T	ENST00000374080		491	aAg/aCg					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39690040	39690051	+	inframe_deletion	In_Frame_Del	DEL	ATAAACACAAAG	ATAAACACAAAG	-			P-0009798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	50	185	0	ENST00000361337.2:c.79_90del	p.Lys27_Asp30del	p.K27_D30del	ENST00000361337	NM_003286.2	22	cATAAACACAAAGat/cat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	120	564	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138426036	138426036	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	365	319	0	ENST00000289153.2:c.1495A>G	p.Lys499Glu	p.K499E	ENST00000289153	NM_006219.2	499	Aaa/Gaa					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100998483	100998483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	47	165	0	ENST00000325455.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000325455	NM_001202474.3	440	aCg/aTg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs866775781		P-0005956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	275	458	0	ENST00000269305.4:c.396G>T	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaT					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	279	326	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176721943	176721961	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCCTGGCAAGCTGTTAA	ACCCCTGGCAAGCTGTTAA	-			P-0008448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	22	194	0	ENST00000439151.2:c.7575_7593del	p.Pro2526HisfsTer46	p.P2526Hfs*46	ENST00000439151	NM_022455.4	2525	gACCCCTGGCAAGCTGTTAAa/ga					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207077	1207077	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	234	606	0	ENST00000326873.7:c.169del	p.Glu57LysfsTer7	p.E57Kfs*7	ENST00000326873	NM_000455.4	55	ctG/ct					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105819	27105819	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	113	535	0	ENST00000324856.7:c.5430C>G	p.Asp1810Glu	p.D1810E	ENST00000324856	NM_006015.4	1810	gaC/gaG					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532671	187532671	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	185	502	0	ENST00000441802.2:c.9722A>T	p.Glu3241Val	p.E3241V	ENST00000441802	NM_005245.3	3241	gAg/gTg					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119146796	119146796	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	168	497	0	ENST00000264033.4:c.959A>G	p.His320Arg	p.H320R	ENST00000264033	NM_005188.3	320	cAc/cGc					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123181319	123181319	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	198	609	0	ENST00000218089.9:c.783T>A	p.Asn261Lys	p.N261K	ENST00000218089	NM_001042749.1	261	aaT/aaA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0003985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			129	57	111	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870929	12870929	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0003985-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			974	182	323	0	ENST00000228872.4:c.157del	p.Glu53LysfsTer18	p.E53Kfs*18	ENST00000228872	NM_004064.3	52	atG/at					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	106	706	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63409987	63409987	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0004794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	242	530	0	ENST00000330258.3:c.3180C>A	p.Cys1060Ter	p.C1060*	ENST00000330258	NM_152424.3	1060	tgC/tgA					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61145639	61145639	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	235	460	0	ENST00000295025.8:c.753del	p.Ala252LeufsTer6	p.A252Lfs*6	ENST00000295025	NM_002908.2	251	Aaa/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	312	385	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0009465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	321	364	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101895021	101895021	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	202	246	0	ENST00000374994.4:c.574G>A	p.Gly192Ser	p.G192S	ENST00000374994	NM_004612.2	192	Ggt/Agt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49440408	49440408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	178	210	1	ENST00000301067.7:c.4402G>A	p.Gly1468Ser	p.G1468S	ENST00000301067	NM_003482.3	1468	Ggc/Agc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44942730	44942730	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	323	223	0	ENST00000377967.4:c.3310A>C	p.Thr1104Pro	p.T1104P	ENST00000377967	NM_021140.2	1104	Act/Cct					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	192	323	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	129	375	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0008529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	111	458	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0008529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	92	333	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11190804	11190804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	112	196	2	ENST00000361445.4:c.5395G>A	p.Glu1799Lys	p.E1799K	ENST00000361445	NM_004958.3	1799	Gaa/Aaa					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29436898	29436898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	76	450	0	ENST00000389048.3:c.3695A>G	p.Asp1232Gly	p.D1232G	ENST00000389048	NM_004304.4	1232	gAc/gGc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49418661	49418661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	62	378	2	ENST00000301067.7:c.15853C>A	p.Pro5285Thr	p.P5285T	ENST00000301067	NM_003482.3	5285	Cct/Act					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32912399	32912399	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	99	731	1	ENST00000380152.3:c.3907G>A	p.Gly1303Ser	p.G1303S	ENST00000380152		1303	Ggc/Agc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70357715	70357715	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1253	326	597	1	ENST00000374080.3:c.5966G>A	p.Arg1989His	p.R1989H	ENST00000374080		1989	cGc/cAc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142269101	142269101	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146041880		P-0004577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	15	668	1	ENST00000350721.4:c.2849C>T	p.Pro950Leu	p.P950L	ENST00000350721	NM_001184.3	950	cCg/cTg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	252	202	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176637574	176637574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	665	348	2	ENST00000439151.2:c.2174C>T	p.Thr725Met	p.T725M	ENST00000439151	NM_022455.4	725	aCg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005756-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	637	532	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0009371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	164	357	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	49	187	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412884	49412884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	172	557	1	ENST00000418115.1:c.139G>A	p.Glu47Lys	p.E47K	ENST00000418115	NM_001664.2	47	Gag/Aag					NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0009371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	100	283	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	47	341	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc					NEWRECORD																																																																									
IL10	0	MSKCC	GRCh37	1	206944709	206944709	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	19	265	0	ENST00000423557.1:c.217G>C	p.Asp73His	p.D73H	ENST00000423557	NM_000572.2	73	Gac/Cac					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412878	49412878	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	169	535	0	ENST00000418115.1:c.145G>A	p.Asp49Asn	p.D49N	ENST00000418115	NM_001664.2	49	Gat/Aat					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118369110	118369110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	133	249	0	ENST00000534358.1:c.5828G>T	p.Gly1943Val	p.G1943V	ENST00000534358	NM_005933.3	1943	gGa/gTa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913492	32913492	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	136	750	0	ENST00000380152.3:c.5000C>T	p.Ser1667Leu	p.S1667L	ENST00000380152		1667	tCa/tTa					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134540	41134540	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	34	720	0	ENST00000379561.5:c.1088C>G	p.Ser363Cys	p.S363C	ENST00000379561	NM_002015.3	363	tCt/tGt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3788579	3788579	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	160	492	0	ENST00000262367.5:c.4375G>C	p.Glu1459Gln	p.E1459Q	ENST00000262367	NM_004380.2	1459	Gag/Cag					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3788600	3788600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	162	476	0	ENST00000262367.5:c.4354G>A	p.Glu1452Lys	p.E1452K	ENST00000262367	NM_004380.2	1452	Gag/Aag					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44922815	44922815	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	191	469	0	ENST00000377967.4:c.1676del	p.Arg559LeufsTer34	p.R559Lfs*34	ENST00000377967	NM_021140.2	559	cGt/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	792	382	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625120	69625120	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	160	404	0	ENST00000334134.2:c.673G>A	p.Val225Ile	p.V225I	ENST00000334134	NM_005247.2	225	Gtt/Att					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226573315	226573315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	448	442	1	ENST00000366794.5:c.901C>A	p.Gln301Lys	p.Q301K	ENST00000366794	NM_001618.3	301	Cag/Aag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47142990	47142990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	592	496	0	ENST00000409792.3:c.4973C>T	p.Ser1658Leu	p.S1658L	ENST00000409792	NM_014159.6	1658	tCa/tTa					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71015170	71015170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	417	373	2	ENST00000318789.4:c.1760C>T	p.Thr587Ile	p.T587I	ENST00000318789	NM_032682.5	587	aCc/aTc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467859	66467859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	713	481	1	ENST00000273854.3:c.410G>A	p.Cys137Tyr	p.C137Y	ENST00000273854	NM_004439.5	137	tGc/tAc					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123298229	123298229	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	240	312	0	ENST00000358487.5:c.625G>A	p.Val209Ile	p.V209I	ENST00000358487	NM_000141.4	209	Gta/Ata					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49440200	49440201	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0004861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	172	413	0	ENST00000301067.7:c.4425_4426del	p.Ser1476LeufsTer14	p.S1476Lfs*14	ENST00000301067	NM_003482.3	1475	gtGTcc/gtcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002513-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			40	519	494	0	ENST00000269305.4:c.711G>C	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atC					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878227	151878227	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0002513-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			220	158	403	0	ENST00000262189.6:c.6718A>G	p.Arg2240Gly	p.R2240G	ENST00000262189	NM_170606.2	2240	Aga/Gga					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17122461	17122461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002513-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			748	135	617	0	ENST00000285071.4:c.934G>C	p.Val312Leu	p.V312L	ENST00000285071	NM_144997.5	312	Gtg/Ctg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76890106	76890106	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0002513-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			282	188	685	0	ENST00000373344.5:c.4788G>C	p.Met1596Ile	p.M1596I	ENST00000373344	NM_000489.3	1596	atG/atC					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17359604	17359604	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1113	65	613	0	ENST00000375499.3:c.237T>G	p.Ile79Met	p.I79M	ENST00000375499	NM_003000.2	79	atT/atG					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56495621	56495621	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	92	489	0	ENST00000267101.3:c.3811G>T	p.Gly1271Cys	p.G1271C	ENST00000267101	NM_001982.3	1271	Ggt/Tgt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191565	10191572	+	frameshift_variant	Frame_Shift_Del	DEL	AGATCTGG	AGATCTGG	-			P-0005837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	104	590	2	ENST00000256474.2:c.559_566del	p.Asp187ArgfsTer66	p.D187Rfs*66	ENST00000256474	NM_000551.3	186	gaAGATCTGGaa/gaaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	63	442	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0009138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	99	378	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0009138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	85	616	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88678928	88678928	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0009138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	85	479	0	ENST00000372037.3:c.869-1G>A		p.X290_splice	ENST00000372037	NM_004329.2	290						NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72822338	72822338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1477	384	806	0	ENST00000268489.5:c.9837G>A	p.Met3279Ile	p.M3279I	ENST00000268489	NM_006885.3	3279	atG/atA					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47688689	47688689	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	286	513	0	ENST00000347630.2:c.611T>G	p.Leu204Trp	p.L204W	ENST00000347630	NM_001007230.1	204	tTg/tGg					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30051590	30051595	+	inframe_deletion	In_Frame_Del	DEL	ATCTGT	ATCTGT	-			P-0008903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	206	437	0	ENST00000338641.4:c.527_532delTGTATC	p.Leu176_Tyr177del	p.L176_Y177del	ENST00000338641	NM_000268.3	175	aATCTGTat/aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	111	540	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	36	302	0	ENST00000304494.5:c.251A>G	p.Asp84Gly	p.D84G	ENST00000304494	NM_000077.4	84	gAc/gGc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971107	21971107	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	36	302	0	ENST00000304494.5:c.251A>G	p.Asp84Gly	p.D84G	ENST00000304494	NM_000077.4	84	gAc/gGc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412326	139412326	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	40	612	0	ENST00000277541.6:c.1319G>T	p.Cys440Phe	p.C440F	ENST00000277541	NM_017617.3	440	tGt/tTt					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133220067	133220067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	84	699	1	ENST00000320574.5:c.4370G>A	p.Gly1457Asp	p.G1457D	ENST00000320574	NM_006231.2	1457	gGc/gAc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15942868	15942868	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	56	576	0	ENST00000268712.3:c.6834A>C	p.Lys2278Asn	p.K2278N	ENST00000268712	NM_006311.3	2278	aaA/aaC					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944502	40944502	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	37	671	0	ENST00000373198.4:c.2000A>G	p.Glu667Gly	p.E667G	ENST00000373198	NM_133170.3	667	gAg/gGg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41419834	41419834	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0006519-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	30	468	0	ENST00000373198.4:c.486+1G>T		p.X162_splice	ENST00000373198	NM_133170.3	162						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	276	558	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	344	759	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36933747	36933747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	162	813	2	ENST00000361632.4:c.1652C>T	p.Pro551Leu	p.P551L	ENST00000361632		551	cCc/cTc					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71247530	71247530	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	78	344	0	ENST00000318789.4:c.3G>A	p.Met1?	p.M1?	ENST00000318789	NM_032682.5	1	atG/atA					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2958163	2958163	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	110	512	0	ENST00000396946.4:c.2569G>T	p.Glu857Ter	p.E857*	ENST00000396946	NM_032415.4	857	Gag/Tag					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116417463	116417463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	147	631	0	ENST00000397752.3:c.3280C>T	p.His1094Tyr	p.H1094Y	ENST00000397752	NM_000245.2	1094	Cat/Tat					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8528633	8528633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	479	644	1	ENST00000356435.5:c.499G>T	p.Asp167Tyr	p.D167Y	ENST00000356435		167	Gac/Tac					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974711	21974711	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	135	476	0	ENST00000304494.5:c.116A>T	p.Asn39Ile	p.N39I	ENST00000304494	NM_000077.4	39	aAc/aTc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974711	21974711	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	135	476	0	ENST00000304494.5:c.116A>T	p.Asn39Ile	p.N39I	ENST00000304494	NM_000077.4	39	aAc/aTc					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23649216	23649216	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	210	698	0	ENST00000261584.4:c.166G>A	p.Asp56Asn	p.D56N	ENST00000261584	NM_024675.3	56	Gat/Aat					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38487490	38487490	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs150291626		P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	127	488	0	ENST00000254066.5:c.20C>G	p.Ser7Cys	p.S7C	ENST00000254066	NM_000964.3	7	tCc/tGc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1218494	1218494	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	130	545	0	ENST00000326873.7:c.369G>C	p.Gln123His	p.Q123H	ENST00000326873	NM_000455.4	123	caG/caC					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1219360	1219360	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	172	571	0	ENST00000326873.7:c.412G>C	p.Glu138Gln	p.E138Q	ENST00000326873	NM_000455.4	138	Gaa/Caa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220466	1220466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	155	563	3	ENST00000326873.7:c.559G>A	p.Gly187Ser	p.G187S	ENST00000326873	NM_000455.4	187	Ggt/Agt					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44513240	44513240	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	78	321	0	ENST00000291552.4:c.695G>A	p.Arg232Lys	p.R232K	ENST00000291552	NM_006758.2	232	aGa/aAa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	94	445	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0005288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	64	319	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193094339	193094339	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	78	328	0	ENST00000367435.3:c.229C>G	p.Arg77Gly	p.R77G	ENST00000367435	NM_024529.4	77	Cgt/Ggt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584607	48584607	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005288-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	121	471	0	ENST00000342988.3:c.781delC	p.His261IlefsTer75	p.H261Ifs*75	ENST00000342988	NM_005359.5	260	taC/ta					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46509541	46509541	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	38	222	0	ENST00000262741.5:c.1190C>T	p.Ala397Val	p.A397V	ENST00000262741	NM_003629.3	397	gCc/gTc					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46521483	46521483	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	104	426	2	ENST00000262741.5:c.925C>T	p.Arg309Ter	p.R309*	ENST00000262741	NM_003629.3	309	Cga/Tga					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55140756	55140756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	139	341	0	ENST00000257290.5:c.1617C>G	p.Ile539Met	p.I539M	ENST00000257290	NM_006206.4	539	atC/atG					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86659321	86659321	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	207	299	1	ENST00000274376.6:c.1610G>T	p.Arg537Met	p.R537M	ENST00000274376	NM_002890.2	537	aGg/aTg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8733827	8733827	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	186	333	0	ENST00000356435.5:c.17G>T	p.Arg6Met	p.R6M	ENST00000356435		6	aGg/aTg					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64129400	64129400	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	383	329	3	ENST00000334205.4:c.832T>A	p.Cys278Ser	p.C278S	ENST00000334205	NM_003942.2	278	Tgt/Agt					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	420065	420065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	288	353	0	ENST00000399788.2:c.3202C>G	p.His1068Asp	p.H1068D	ENST00000399788	NM_001042603.1	1068	Cat/Gat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577138	7577138	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	400	395	0	ENST00000269305.4:c.800G>C	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGg/cCg					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411990	63411990	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	278	258	0	ENST00000330258.3:c.1177G>C	p.Glu393Gln	p.E393Q	ENST00000330258	NM_152424.3	393	Gaa/Caa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	361	362	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149510128	149510128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	109	378	0	ENST00000261799.4:c.1341C>G	p.Ile447Met	p.I447M	ENST00000261799	NM_002609.3	447	atC/atG					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32165273	32165273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	121	394	0	ENST00000375023.3:c.4855C>G	p.Leu1619Val	p.L1619V	ENST00000375023	NM_004557.3	1619	Ctg/Gtg					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781488	135781488	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	191	769	0	ENST00000298552.3:c.1477G>C	p.Glu493Gln	p.E493Q	ENST00000298552	NM_001162426.1	493	Gag/Cag					NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139794048	139794048	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	57	664	0	ENST00000247668.2:c.191C>G	p.Ser64Cys	p.S64C	ENST00000247668	NM_021138.3	64	tCt/tGt					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63852095	63852095	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	67	289	0	ENST00000279873.7:c.2873C>A	p.Ser958Ter	p.S958*	ENST00000279873	NM_032199.2	958	tCa/tAa					NEWRECORD																																																																									
FGF4	0	MSKCC	GRCh37	11	69589513	69589513	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	34	87	0	ENST00000168712.1:c.340A>T	p.Ser114Cys	p.S114C	ENST00000168712	NM_002007.2	114	Agc/Tgc					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77103453	77103453	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	127	603	0	ENST00000356341.3:c.113C>G	p.Ser38Cys	p.S38C	ENST00000356341	NM_002576.4	38	tCt/tGt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49422616	49422616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	112	385	0	ENST00000301067.7:c.14377G>A	p.Ala4793Thr	p.A4793T	ENST00000301067	NM_003482.3	4793	Gcc/Acc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29008078	29008078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	80	362	0	ENST00000282397.4:c.691G>A	p.Asp231Asn	p.D231N	ENST00000282397	NM_002019.4	231	Gat/Aat					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32972816	32972816	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	91	449	0	ENST00000380152.3:c.10166C>T	p.Ser3389Phe	p.S3389F	ENST00000380152		3389	tCt/tTt					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23646234	23646234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	140	608	0	ENST00000261584.4:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000261584	NM_024675.3	545	Gaa/Aaa					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81922876	81922876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	112	574	0	ENST00000359376.3:c.865G>A	p.Glu289Lys	p.E289K	ENST00000359376	NM_002661.3	289	Gag/Aag					NEWRECORD																																																																									
SRSF2	0	MSKCC	GRCh37	17	74732266	74732266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	163	681	1	ENST00000359995.5:c.643G>A	p.Glu215Lys	p.E215K	ENST00000359995	NM_001195427.1	215	Gag/Aag					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790123	40790123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	46	256	1	ENST00000373198.4:c.2608C>T	p.Arg870Cys	p.R870C	ENST00000373198	NM_133170.3	870	Cgc/Tgc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44833960	44833960	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	34	617	0	ENST00000377967.4:c.384G>C	p.Lys128Asn	p.K128N	ENST00000377967	NM_021140.2	128	aaG/aaC					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47422380	47422380	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	142	549	1	ENST00000377045.4:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000377045	NM_001654.4	5	cGg/cAg					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54948551	54949166	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCTATGAATAACTCTCTTCGAATGACAGTAAGACAGGGCATTTGCCAATTCTGTTATATACTGTTAAAACAATATTGAAAGCCTATGTTTTAGATTTTATATAACACAAGTTAATATTAGACATCTCTTCCGAAAGGAACACAACATAGATTTAACATGGTTTGCAGGTTTTGGCCAGGCACAGTGGCTCACACCTATAATCCCAACACTTTGGGGGACTGAGGTGGGAGGATCACTTGAGCCCAGGGGTTCAAGACCAGCCTGGGAAACATAGCAAGACTCCATCTCTACAAAAATTTAAAAATTAGCTGAGCGTGATGGTGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATTGCTTGAGACCAGGAGGTCAAAGCTGCAGTGAGCCATGATCACACTTCAGCCTGGGTGACAGAAGGAGACCCTGTCTCAAAAAGGAAAAGACAAAACAAAAAATACATTTTGCAGGTTTTAAAGCAAGGATTGTAGAAATTATATAGGAGTCTACACACACACACACACACACACACACACACACACATCAACTGAACCAATTTATAGTGGTTAGCATGAAGTGAAATTACCCAATGCTTAGTCATC	TCTCTATGAATAACTCTCTTCGAATGACAGTAAGACAGGGCATTTGCCAATTCTGTTATATACTGTTAAAACAATATTGAAAGCCTATGTTTTAGATTTTATATAACACAAGTTAATATTAGACATCTCTTCCGAAAGGAACACAACATAGATTTAACATGGTTTGCAGGTTTTGGCCAGGCACAGTGGCTCACACCTATAATCCCAACACTTTGGGGGACTGAGGTGGGAGGATCACTTGAGCCCAGGGGTTCAAGACCAGCCTGGGAAACATAGCAAGACTCCATCTCTACAAAAATTTAAAAATTAGCTGAGCGTGATGGTGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATTGCTTGAGACCAGGAGGTCAAAGCTGCAGTGAGCCATGATCACACTTCAGCCTGGGTGACAGAAGGAGACCCTGTCTCAAAAAGGAAAAGACAAAACAAAAAATACATTTTGCAGGTTTTAAAGCAAGGATTGTAGAAATTATATAGGAGTCTACACACACACACACACACACACACACACACACACATCAACTGAACCAATTTATAGTGGTTAGCATGAAGTGAAATTACCCAATGCTTAGTCATC	-			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1322	428	502	0	ENST00000312783.6:c.706-554_767del		p.X236_splice	ENST00000312783	NM_198436.1	236						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577125	7577131	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAAAG	CTCAAAG	-			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	235	559	0	ENST00000269305.4:c.807_813del	p.Ser269ArgfsTer74	p.S269Rfs*74	ENST00000269305	NM_001126112.2	269	agCTTTGAG/ag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56160680	56160689	+	frameshift_variant	Frame_Shift_Del	DEL	ACTGCAGCAG	ACTGCAGCAG	-			P-0004580-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	181	462	0	ENST00000399503.3:c.955_964del	p.Leu319Ter	p.L319*	ENST00000399503	NM_005921.1	318	ttACTGCAGCAG/tt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0009738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	12	225	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	15	456	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44913136	44913136	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	26	901	1	ENST00000377967.4:c.811C>T	p.Gln271Ter	p.Q271*	ENST00000377967	NM_021140.2	271	Cag/Tag					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227662539	227662539	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	12	382	0	ENST00000305123.5:c.916G>A	p.Glu306Lys	p.E306K	ENST00000305123	NM_005544.2	306	Gag/Aag					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46268401	46268401	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004939-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	29	967	0	ENST00000371998.3:c.2788A>G	p.Met930Val	p.M930V	ENST00000371998		930	Atg/Gtg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	25	286	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	152	316	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41750482	41750482	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	36	335	0	ENST00000226382.2:c.146C>A	p.Thr49Asn	p.T49N	ENST00000226382	NM_003924.3	49	aCc/aAc					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143326466	143326466	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	24	190	1	ENST00000262992.4:c.148C>A	p.Leu50Ile	p.L50I	ENST00000262992	NM_001101669.1	50	Ctc/Atc					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5126424	5126424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	17	243	0	ENST00000381652.3:c.3269G>C	p.Arg1090Thr	p.R1090T	ENST00000381652	NM_004972.3	1090	aGa/aCa					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12871890	12871890	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0004777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	41	126	0	ENST00000228872.4:c.*8+2T>C		p.X3_splice	ENST00000228872	NM_004064.3	3						NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48916753	48916753	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	17	282	2	ENST00000267163.4:c.283A>T	p.Lys95Ter	p.K95*	ENST00000267163	NM_000321.2	95	Aaa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	494	694	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176721492	176721492	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	355	493	1	ENST00000439151.2:c.7123C>A	p.Leu2375Met	p.L2375M	ENST00000439151	NM_022455.4	2375	Ctg/Atg					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30069456	30069456	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	289	465	0	ENST00000338641.4:c.1321G>T	p.Ala441Ser	p.A441S	ENST00000338641	NM_000268.3	441	Gct/Tct					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0005053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	19	346	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	80	338	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25978946	25978946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	63	547	1	ENST00000435504.4:c.977C>T	p.Ala326Val	p.A326V	ENST00000435504		326	gCc/gTc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164097	47164097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	82	395	0	ENST00000409792.3:c.2029C>T	p.Pro677Ser	p.P677S	ENST00000409792	NM_014159.6	677	Cct/Tct					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189587167	189587167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	71	493	0	ENST00000264731.3:c.1184C>T	p.Ser395Phe	p.S395F	ENST00000264731	NM_003722.4	395	tCc/tTc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187629997	187629997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	49	440	0	ENST00000441802.2:c.985C>T	p.Pro329Ser	p.P329S	ENST00000441802	NM_005245.3	329	Cct/Tct					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117718277	117718277	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	80	401	0	ENST00000368508.3:c.580C>T	p.Pro194Ser	p.P194S	ENST00000368508	NM_002944.2	194	Cct/Tct					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8501020	8501020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	54	455	0	ENST00000356435.5:c.1862C>T	p.Pro621Leu	p.P621L	ENST00000356435		621	cCa/cTa					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77054927	77054927	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	124	610	0	ENST00000356341.3:c.935T>A	p.Ile312Asn	p.I312N	ENST00000356341	NM_002576.4	312	aTt/aAt					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2225356	2225356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	59	500	2	ENST00000326181.6:c.1441C>T	p.Pro481Ser	p.P481S	ENST00000326181	NM_032271.2	481	Ccg/Tcg					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39923172	39923172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	166	333	0	ENST00000378444.4:c.3536C>T	p.Ser1179Phe	p.S1179F	ENST00000378444	NM_001123385.1	1179	tCc/tTc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70356356	70356356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	132	274	0	ENST00000374080.3:c.5251C>T	p.Pro1751Ser	p.P1751S	ENST00000374080		1751	Ccg/Tcg					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729104	66729109	+	inframe_deletion	In_Frame_Del	DEL	ACCCGC	ACCCGC	-			P-0005053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	186	610	0	ENST00000307102.5:c.313_318del	p.Pro105_Ala106del	p.P105_A106del	ENST00000307102	NM_002755.3	104	aaACCCGCa/aaa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0005713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	112	468	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12871182	12871182	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	51	211	0	ENST00000228872.4:c.410delC	p.Pro137ArgfsTer8	p.P137Rfs*8	ENST00000228872	NM_004064.3	137	Ccg/cg					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185155241	185155241	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	189	470	1	ENST00000265026.3:c.482G>C	p.Trp161Ser	p.W161S	ENST00000265026	NM_004721.4	161	tGg/tCg					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103506669	103506669	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs188898060		P-0005713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	98	413	0	ENST00000355739.4:c.412C>T	p.Arg138Ter	p.R138*	ENST00000355739	NM_000123.3	138	Cga/Tga					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125505351	125505351	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1088	88	487	0	ENST00000428830.2:c.641G>C	p.Ser214Thr	p.S214T	ENST00000428830	NM_001114121.2	214	aGc/aCc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593583	55593587	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	AACCC	AACCC	TT			P-0009879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	618	539	0	ENST00000288135.5:c.1649_1653delinsTT	p.Lys550_Pro551delinsIle	p.K550_P551delinsI	ENST00000288135	NM_000222.2	550	aAACCC/aTT					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164928	47164928	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	147	279	0	ENST00000409792.3:c.1198C>T	p.Arg400Ter	p.R400*	ENST00000409792	NM_014159.6	400	Cga/Tga					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52637653	52637653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	237	476	1	ENST00000394830.3:c.2663C>T	p.Ser888Leu	p.S888L	ENST00000394830	NM_018313.4	888	tCa/tTa					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098804	178098804	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	210	464	0	ENST00000397062.3:c.241G>C	p.Gly81Arg	p.G81R	ENST00000397062	NM_006164.4	81	Ggt/Cgt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117715340	117715340	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	67	314	0	ENST00000368508.3:c.1149C>A	p.Phe383Leu	p.F383L	ENST00000368508	NM_002944.2	383	ttC/ttA					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157522066	157522066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	130	331	0	ENST00000346085.5:c.4338G>T	p.Gln1446His	p.Q1446H	ENST00000346085	NM_020732.3	1446	caG/caT					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66518954	66518954	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	197	451	0	ENST00000358598.2:c.235G>T	p.Glu79Ter	p.E79*	ENST00000358598	NM_212471.2	79	Gag/Tag					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5214592	5214592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	104	448	1	ENST00000357368.4:c.4474C>T	p.Arg1492Trp	p.R1492W	ENST00000357368	NM_002850.3	1492	Cgg/Tgg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944464	40944464	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	201	610	1	ENST00000373198.4:c.2038A>T	p.Thr680Ser	p.T680S	ENST00000373198	NM_133170.3	680	Aca/Tca					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183805	10183808	+	frameshift_variant	Frame_Shift_Del	DEL	GACG	GACG	-			P-0006557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	126	249	0	ENST00000256474.2:c.275_278del	p.Asp92AlafsTer66	p.D92Afs*66	ENST00000256474	NM_000551.3	92	GACGgc/gc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116423407	116423407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28932777		P-0002707-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			863	473	335	0	ENST00000397752.3:c.3682G>A	p.Asp1228Asn	p.D1228N	ENST00000397752	NM_000245.2	1228	Gac/Aac					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	288	670	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578253	7578253	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	41	578	1	ENST00000269305.4:c.596G>T	p.Gly199Val	p.G199V	ENST00000269305	NM_001126112.2	199	gGa/gTa					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248586	59248586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	613	576	0	ENST00000371222.2:c.157C>T	p.Leu53Phe	p.L53F	ENST00000371222	NM_002228.3	53	Ctc/Ttc					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575089	64575089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	544	517	1	ENST00000337652.1:c.733G>T	p.Val245Leu	p.V245L	ENST00000337652	NM_130803.2	245	Gtg/Ttg					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59793346	59793346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	286	534	0	ENST00000259008.2:c.2458C>G	p.Gln820Glu	p.Q820E	ENST00000259008	NM_032043.2	820	Caa/Gaa					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248614	59248631	+	inframe_deletion	In_Frame_Del	DEL	GGCCAGGTTCAGGGTCAT	GGCCAGGTTCAGGGTCAT	-			P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	650	591	0	ENST00000371222.2:c.112_129del	p.Met38_Ala43del	p.M38_A43del	ENST00000371222	NM_002228.3	38	ATGACCCTGAACCTGGCC/-					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177113	112177116	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0006595-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	517	544	0	ENST00000257430.4:c.5826_5829del	p.Asp1942GlufsTer27	p.D1942Efs*27	ENST00000257430	NM_000038.5	1941	cCAGAc/cc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	309	377	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0007272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1087	370	429	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1973	432	711	2	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178922301	178922301	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	203	340	0	ENST00000263967.3:c.1070G>T	p.Arg357Leu	p.R357L	ENST00000263967	NM_006218.2	357	cGa/cTa					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81953114	81953114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	87	624	1	ENST00000359376.3:c.2080C>T	p.Arg694Cys	p.R694C	ENST00000359376	NM_002661.3	694	Cgc/Tgc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175872	112175872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	244	315	0	ENST00000257430.4:c.4581del	p.Val1528PhefsTer37	p.V1528Ffs*37	ENST00000257430	NM_000038.5	1527	ccA/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	414	301	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112389	115112389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	72	170	0	ENST00000257566.3:c.1351G>A	p.Ala451Thr	p.A451T	ENST00000257566	NM_016569.3	451	Gcg/Acg					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	148	359	1	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9984860	9984860	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	137	427	0	ENST00000330684.3:c.1105G>T	p.Asp369Tyr	p.D369Y	ENST00000330684	NM_001134407.1	369	Gac/Tac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	29	380	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	29	495	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175147	112175147	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	19	213	0	ENST00000257430.4:c.3856G>T	p.Glu1286Ter	p.E1286*	ENST00000257430	NM_000038.5	1286	Gaa/Taa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	144	659	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1241	53	449	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878749	151878749	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	93	422	0	ENST00000262189.6:c.6196C>T	p.Arg2066Ter	p.R2066*	ENST00000262189	NM_170606.2	2066	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112137036	112137036	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	112	433	1	ENST00000257430.4:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000257430	NM_000038.5	264	Caa/Taa					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123227869	123227869	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	27	212	0	ENST00000218089.9:c.3580C>T	p.Arg1194Trp	p.R1194W	ENST00000218089	NM_001042749.1	1194	Cgg/Tgg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604788	48604794	+	frameshift_variant	Frame_Shift_Del	DEL	ACGAAGT	ACGAAGT	-			P-0009712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	100	477	0	ENST00000342988.3:c.1612_1618del	p.Glu538PhefsTer12	p.E538Ffs*12	ENST00000342988	NM_005359.5	537	gACGAAGTa/ga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	660	421	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117704604	117704604	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	244	588	2	ENST00000368508.3:c.2372A>G	p.Asp791Gly	p.D791G	ENST00000368508	NM_002944.2	791	gAc/gGc					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43612110	43612110	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	309	653	0	ENST00000355710.3:c.2215G>T	p.Val739Phe	p.V739F	ENST00000355710	NM_020975.4	739	Gtc/Ttc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	96	152	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	292	264	0	ENST00000269305.4:c.388C>T	p.Leu130Phe	p.L130F	ENST00000269305	NM_001126112.2	130	Ctc/Ttc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339224	116339224	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	288	339	0	ENST00000397752.3:c.86C>T	p.Ala29Val	p.A29V	ENST00000397752	NM_000245.2	29	gCa/gTa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46124998	46124998	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0009508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	101	313	0	ENST00000334344.6:c.187-2A>G		p.X63_splice	ENST00000334344	NM_152641.2	63						NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58144789	58144789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	102	283	0	ENST00000257904.6:c.439C>G	p.Leu147Val	p.L147V	ENST00000257904	NM_000075.3	147	Ctg/Gtg					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58734152	58734152	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1601	296	652	0	ENST00000305921.3:c.1210C>G	p.Gln404Glu	p.Q404E	ENST00000305921	NM_003620.3	404	Caa/Gaa					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39661100	39661100	+	stop_lost	Nonstop_Mutation	SNP	G	G	T			P-0009508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	180	351	0	ENST00000262039.4:c.2663G>T	p.Ter888LeuextTer4	p.*888Lext*4	ENST00000262039	NM_002647.2	888	tGa/tTa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604806	48604806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	171	285	0	ENST00000342988.3:c.1628T>C	p.Met543Thr	p.M543T	ENST00000342988	NM_005359.5	543	aTg/aCg					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50919786	50919786	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	93	302	1	ENST00000440232.2:c.2953+1G>A		p.X985_splice	ENST00000440232	NM_002691.3	985						NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46233173	46233173	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009508-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	186	418	0	ENST00000334344.6:c.1393del	p.Val465Ter	p.V465*	ENST00000334344	NM_152641.2	464	gcG/gc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	311	249	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162475188	162475188	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	357	343	1	ENST00000366898.1:c.553G>A	p.Asp185Asn	p.D185N	ENST00000366898	NM_004562.2	185	Gat/Aat					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101891209	101891209	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	209	308	0	ENST00000374994.4:c.170C>G	p.Ser57Cys	p.S57C	ENST00000374994	NM_004612.2	57	tCt/tGt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29657313	29657313	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	107	216	0	ENST00000358273.4:c.5610-1G>T		p.X1870_splice	ENST00000358273	NM_001042492.2	1870						NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78867660	78867660	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	402	350	0	ENST00000306801.3:c.2396T>A	p.Leu799His	p.L799H	ENST00000306801	NM_020761.2	799	cTc/cAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40979283	40979283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	270	291	0	ENST00000373198.4:c.1850G>T	p.Arg617Leu	p.R617L	ENST00000373198	NM_133170.3	617	cGg/cTg					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86675550	86675554	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGTTA	AGTTA	-			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	47	169	0	ENST00000274376.6:c.2489_2493del		p.X830_splice	ENST00000274376	NM_002890.2	830						NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717619	89717633	+	inframe_deletion	In_Frame_Del	DEL	TTGTGGTCTGCCAGC	TTGTGGTCTGCCAGC	-			P-0006808-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	216	214	0	ENST00000371953.3:c.645_659del	p.Phe215_Gln219del	p.F215_Q219del	ENST00000371953	NM_000314.4	215	tTTGTGGTCTGCCAGCta/tta					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711894	89711894	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	224	342	0	ENST00000371953.3:c.512A>G	p.Gln171Arg	p.Q171R	ENST00000371953	NM_000314.4	171	cAg/cGg					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87342743	87342743	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	238	358	0	ENST00000277120.3:c.1028A>G	p.His343Arg	p.H343R	ENST00000277120		343	cAc/cGc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68845610	68845618	+	inframe_deletion	In_Frame_Del	DEL	GCCACAGAC	GCCACAGAC	-			P-0007566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	204	366	0	ENST00000261769.5:c.858_866del	p.Thr287_Ala289del	p.T287_A289del	ENST00000261769	NM_004360.3	286	GCCACAGAC/-					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720809	89720809	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	82	174	1	ENST00000371953.3:c.961del	p.Thr321GlnfsTer23	p.T321Qfs*23	ENST00000371953	NM_000314.4	320	ttA/tt					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99459922	99459922	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	74	436	0	ENST00000268035.6:c.2018A>G	p.Tyr673Cys	p.Y673C	ENST00000268035	NM_000875.3	673	tAt/tGt					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391234	139391238	+	frameshift_variant	Frame_Shift_Del	DEL	CACCA	CACCA	-			P-0005462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	66	439	0	ENST00000277541.6:c.6953_6957del	p.Met2318ThrfsTer34	p.M2318Tfs*34	ENST00000277541	NM_017617.3	2318	aTGGTG/a					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134967350	134967350	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A	rs61736108		P-0006757-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	55	514	0	ENST00000398015.3:c.2689G>A	p.Val897Met	p.V897M	ENST00000398015	NM_004441.4	897	Gtg/Atg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0002756-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			286	170	221	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519925		P-0002756-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			520	151	302	0	ENST00000263967.3:c.1357G>C	p.Glu453Gln	p.E453Q	ENST00000263967	NM_006218.2	453	Gaa/Caa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115114276	115114276	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0002756-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			380	110	295	0	ENST00000257566.3:c.942-1G>C		p.X314_splice	ENST00000257566	NM_016569.3	314						NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42021383	42021383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0002756-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			792	237	556	0	ENST00000219905.7:c.3679C>A	p.Pro1227Thr	p.P1227T	ENST00000219905	NM_001164273.1	1227	Cca/Aca					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943543	66943543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	229	262	0	ENST00000374690.3:c.2623C>T	p.His875Tyr	p.H875Y	ENST00000374690	NM_000044.3	875	Cat/Tat					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190670454	190670454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	200	457	0	ENST00000441310.2:c.392C>T	p.Ser131Phe	p.S131F	ENST00000441310	NM_000534.4	131	tCt/tTt					NEWRECORD																																																																									
NFKBIA	0	MSKCC	GRCh37	14	35872477	35872477	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	165	500	0	ENST00000216797.5:c.426del	p.Arg143GlufsTer21	p.R143Efs*21	ENST00000216797	NM_020529.2	142	ttT/tt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52620611	52620611	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	181	355	0	ENST00000394830.3:c.3142del	p.Ile1048LeufsTer86	p.I1048Lfs*86	ENST00000394830	NM_018313.4	1048	Att/tt					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133245026	133245026	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	13	443	0	ENST00000320574.5:c.2089C>G	p.Pro697Ala	p.P697A	ENST00000320574	NM_006231.2	697	Ccc/Gcc					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15355537	15355537	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	27	556	0	ENST00000263377.2:c.2195G>A	p.Gly732Glu	p.G732E	ENST00000263377	NM_058243.2	732	gGg/gAg					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2222339	2222339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	15	399	0	ENST00000326181.6:c.623G>T	p.Arg208Leu	p.R208L	ENST00000326181	NM_032271.2	208	cGa/cTa					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29121266	29121266	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	54	638	0	ENST00000328354.6:c.409C>T	p.Arg137Ter	p.R137*	ENST00000328354	NM_007194.3	137	Cga/Tga					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187549436	187549439	+	frameshift_variant	Frame_Shift_Del	DEL	CACG	CACG	-			P-0005245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	23	493	0	ENST00000441802.2:c.4679_4682del	p.Pro1560ArgfsTer24	p.P1560Rfs*24	ENST00000441802	NM_005245.3	1560	cCGTGg/cg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44942733	44942733	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	29	256	0	ENST00000377967.4:c.3315del	p.Lys1105AsnfsTer15	p.K1105Nfs*15	ENST00000377967	NM_021140.2	1105	Aaa/aa					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006850-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	174	166	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	130	456	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52443757	52443757	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	123	301	0	ENST00000460680.1:c.40C>T	p.Leu14Phe	p.L14F	ENST00000460680	NM_004656.3	14	Ctc/Ttc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5208027	5208027	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	114	536	0	ENST00000357368.4:c.5684T>C	p.Ile1895Thr	p.I1895T	ENST00000357368	NM_002850.3	1895	aTc/aCc					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9624840	9624840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	58	424	0	ENST00000353224.5:c.137C>T	p.Thr46Met	p.T46M	ENST00000353224	NM_177990.2	46	aCg/aTg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52595852	52595853	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0009257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1584	263	477	0	ENST00000394830.3:c.4062_4063delCG	p.Phe1354LeufsTer15	p.F1354Lfs*15	ENST00000394830	NM_018313.4	1354	ttCGgg/ttgg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47059211	47059211	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	150	482	0	ENST00000409792.3:c.7450C>T	p.Gln2484Ter	p.Q2484*	ENST00000409792	NM_014159.6	2484	Cag/Tag					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188297	10188297	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	179	614	0	ENST00000256474.2:c.444delT	p.Phe148LeufsTer11	p.F148Lfs*11	ENST00000256474	NM_000551.3	147	aTt/at					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	196	420	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57484821	57484821	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	92	578	1	ENST00000371085.3:c.801G>C	p.Gln267His	p.Q267H	ENST00000371085	NM_000516.4	267	caG/caC					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426121	47426121	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	159	417	0	ENST00000377045.4:c.641C>T	p.Ser214Phe	p.S214F	ENST00000377045	NM_001654.4	214	tCc/tTc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643882	52643883	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	T			P-0009593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	222	514	0	ENST00000394830.3:c.2013_2014delinsA	p.Asn671LysfsTer15	p.N671Kfs*15	ENST00000394830	NM_018313.4	671	aaCTat/aaAat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	144	263	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120396	94120396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	84	351	0	ENST00000369303.4:c.655G>A	p.Val219Met	p.V219M	ENST00000369303	NM_004440.3	219	Gtg/Atg					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59886000	59886000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	29	180	0	ENST00000259008.2:c.746G>C	p.Gly249Ala	p.G249A	ENST00000259008	NM_032043.2	249	gGg/gCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0006390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	428	413	0	ENST00000269305.4:c.993+1G>A		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	240	397	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23641487	23641487	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006390-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	337	472	1	ENST00000261584.4:c.1988G>A	p.Arg663His	p.R663H	ENST00000261584	NM_024675.3	663	cGc/cAc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0007396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	58	254	1	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178948136	178948136	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	66	275	0	ENST00000263967.3:c.2908G>A	p.Glu970Lys	p.E970K	ENST00000263967	NM_006218.2	970	Gaa/Aaa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115115380	115115400	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCACCTTTTTTCTCTTCGGC	CTCACCTTTTTTCTCTTCGGC	-			P-0007396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	77	406	0	ENST00000257566.3:c.926_941+5del		p.X309_splice	ENST00000257566	NM_016569.3	309						NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57858645	57858645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006552-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	118	399	0	ENST00000228682.2:c.383C>T	p.Thr128Ile	p.T128I	ENST00000228682	NM_005269.2	128	aCc/aTc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105629	27105629	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	102	563	0	ENST00000324856.7:c.5240C>G	p.Pro1747Arg	p.P1747R	ENST00000324856	NM_006015.4	1747	cCt/cGt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108218005	108218005	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0008711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	101	266	0	ENST00000278616.4:c.8585-1G>A		p.X2862_splice	ENST00000278616	NM_000051.3	2862						NEWRECORD																																																																									
CD79B	0	MSKCC	GRCh37	17	62007723	62007723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	50	132	0	ENST00000392795.3:c.144G>A	p.Trp48Ter	p.W48*	ENST00000392795	NM_001039933.1	48	tgG/tgA					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30314608	30314608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	50	425	0	ENST00000262643.3:c.1157C>T	p.Ala386Val	p.A386V	ENST00000262643	NM_001238.2	386	gCt/gTt					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89350779	89350779	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	69	689	0	ENST00000301030.4:c.2171C>A	p.Thr724Lys	p.T724K	ENST00000301030	NM_001256183.1	724	aCa/aAa					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	13	298	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48923102	48923102	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	15	506	0	ENST00000267163.4:c.550G>T	p.Glu184Ter	p.E184*	ENST00000267163	NM_000321.2	184	Gaa/Taa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772235	68772236	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CC	CC	-			P-0009414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	16	666	0	ENST00000261769.5:c.84_85del	p.Cys28Ter	p.C28*	ENST00000261769	NM_004360.3	28	tgCCac/tgac					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38959419	38959419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	15	384	0	ENST00000357387.3:c.2056C>A	p.Leu686Ile	p.L686I	ENST00000357387	NM_152756.3	686	Ctt/Att					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0006471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	244	427	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt					NEWRECORD																																																																									
HIST1H3J	0	MSKCC	GRCh37	6	27858476	27858476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1248	107	807	0	ENST00000359303.2:c.95C>T	p.Ala32Val	p.A32V	ENST00000359303	NM_003535.2	32	gCg/gTg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49027208	49027229	+	frameshift_variant	Frame_Shift_Del	DEL	TTAATCTTCCTCTCCAGAATAA	TTAATCTTCCTCTCCAGAATAA	-			P-0006471-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	83	347	0	ENST00000267163.4:c.1776_1797del	p.Asn593ThrfsTer11	p.N593Tfs*11	ENST00000267163	NM_000321.2	592	cTTAATCTTCCTCTCCAGAATAAt/ct					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	86	264	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41275648	41275648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	249	269	0	ENST00000349496.5:c.1543C>T	p.Arg515Ter	p.R515*	ENST00000349496	NM_001904.3	515	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	454	344	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099852	27099852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	162	298	0	ENST00000324856.7:c.3731C>T	p.Pro1244Leu	p.P1244L	ENST00000324856	NM_006015.4	1244	cCc/cTc					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226570878	226570878	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	95	173	0	ENST00000366794.5:c.1018C>T	p.Arg340Ter	p.R340*	ENST00000366794	NM_001618.3	340	Cga/Tga					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29519886	29519886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	135	333	1	ENST00000389048.3:c.1685G>A	p.Gly562Glu	p.G562E	ENST00000389048	NM_004304.4	562	gGa/gAa					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1278890	1278890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	104	294	1	ENST00000310581.5:c.2152G>A	p.Asp718Asn	p.D718N	ENST00000310581	NM_198253.2	718	Gac/Aac					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81392050	81392050	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	278	474	0	ENST00000222390.5:c.227G>A	p.Arg76Lys	p.R76K	ENST00000222390	NM_000601.4	76	aGg/aAg					NEWRECORD																																																																									
PPP6C	0	MSKCC	GRCh37	9	127912061	127912061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	403	614	2	ENST00000373547.4:c.809C>T	p.Ser270Leu	p.S270L	ENST00000373547	NM_002721.4	270	tCg/tTg					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2154404	2154404	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	112	415	1	ENST00000434045.2:c.524G>A	p.Trp175Ter	p.W175*	ENST00000434045	NM_001127598.1	175	tGg/tAg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133235980	133235980	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	163	364	2	ENST00000320574.5:c.3176G>A	p.Arg1059His	p.R1059H	ENST00000320574	NM_006231.2	1059	cGc/cAc					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40477072	40477072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	282	430	0	ENST00000264657.5:c.1373C>T	p.Ser458Phe	p.S458F	ENST00000264657	NM_139276.2	458	tCc/tTc					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59924472	59924472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	331	441	0	ENST00000259008.2:c.617C>T	p.Ser206Leu	p.S206L	ENST00000259008	NM_032043.2	206	tCg/tTg					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78681669	78681669	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	135	309	0	ENST00000306801.3:c.377C>A	p.Thr126Asn	p.T126N	ENST00000306801	NM_020761.2	126	aCt/aAt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41400190	41400190	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	138	263	0	ENST00000373198.4:c.569G>A	p.Arg190Lys	p.R190K	ENST00000373198	NM_133170.3	190	aGa/aAa					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46268489	46268489	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	333	591	0	ENST00000371998.3:c.2876C>T	p.Pro959Leu	p.P959L	ENST00000371998		959	cCc/cTc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29592333	29592335	+	missense_variant	Missense_Mutation	ONP	CTA	CTA	TTT			P-0008946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	288	359	0	ENST00000358273.4:c.4811_4813delinsTTT	p.Pro1604_Ile1605delinsLeuPhe	p.P1604_I1605delinsLF	ENST00000358273	NM_001042492.2	1604	cCTAtt/cTTTtt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	89	383	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	31	387	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	42	421	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	35	115	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	35	115	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56448319	56448319	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009836-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	44	287	0	ENST00000407977.2:c.328G>T	p.Glu110Ter	p.E110*	ENST00000407977		110	Gag/Tag					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	124	277	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118166577	118166577	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	100	189	0	ENST00000369448.3:c.1087G>A	p.Val363Ile	p.V363I	ENST00000369448	NM_017709.3	363	Gtc/Atc					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69631128	69631128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	153	570	0	ENST00000334134.2:c.284G>A	p.Arg95Gln	p.R95Q	ENST00000334134	NM_005247.2	95	cGg/cAg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344671	118344671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	138	386	1	ENST00000534358.1:c.2797C>T	p.Arg933Trp	p.R933W	ENST00000534358	NM_005933.3	933	Cgg/Tgg					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	419049	419049	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	336	450	0	ENST00000399788.2:c.3298G>T	p.Glu1100Ter	p.E1100*	ENST00000399788	NM_001042603.1	1100	Gaa/Taa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604773	48604773	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	143	331	0	ENST00000342988.3:c.1595C>A	p.Ala532Asp	p.A532D	ENST00000342988	NM_005359.5	532	gCc/gAc					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246655	46246656	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0009303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	44	148	0	ENST00000334344.6:c.4751_4752del	p.Tyr1584CysfsTer24	p.Y1584Cfs*24	ENST00000334344	NM_152641.2	1583	acATat/acat					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11292561	11292569	+	inframe_deletion	In_Frame_Del	DEL	ATTTCCTCA	ATTTCCTCA	-			P-0009303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	55	386	0	ENST00000361445.4:c.2438_2446del	p.Met813_Trp816delinsArg	p.M813_W816delinsR	ENST00000361445	NM_004958.3	813	aTGAGGAAATgg/agg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	105	580	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0007604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	124	305	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0007604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	124	305	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59878702	59878702	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	126	783	0	ENST00000259008.2:c.1052C>T	p.Pro351Leu	p.P351L	ENST00000259008	NM_032043.2	351	cCa/cTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	276	655	1	ENST00000269305.4:c.892del	p.Glu298SerfsTer47	p.E298Sfs*47	ENST00000269305	NM_001126112.2	298	Gag/ag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	406	303	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	333	330	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89391168	89391168	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	159	317	0	ENST00000336596.2:c.1234G>A	p.Val412Ile	p.V412I	ENST00000336596	NM_005233.5	412	Gtt/Att					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69998291	69998291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	250	378	0	ENST00000352241.4:c.852C>A	p.Asn284Lys	p.N284K	ENST00000352241	NM_198159.2	284	aaC/aaA					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69222572	69222572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			5584	794	465	1	ENST00000462284.1:c.545C>T	p.Ser182Phe	p.S182F	ENST00000462284	NM_002392.5	182	tCt/tTt					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69222704	69222704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			5713	701	449	0	ENST00000462284.1:c.677C>G	p.Ser226Trp	p.S226W	ENST00000462284	NM_002392.5	226	tCg/tGg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	156	172	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577115	7577115	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	394	468	0	ENST00000269305.4:c.823T>C	p.Cys275Arg	p.C275R	ENST00000269305	NM_001126112.2	275	Tgt/Cgt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916703	178916703	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	227	644	0	ENST00000263967.3:c.90G>T	p.Met30Ile	p.M30I	ENST00000263967	NM_006218.2	30	atG/atT					NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58740416	58740416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs777279856		P-0006633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	532	610	1	ENST00000305921.3:c.1321C>T	p.Arg441Cys	p.R441C	ENST00000305921	NM_003620.3	441	Cgt/Tgt					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2106184	2106226	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGACCGC	GTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGACCGC	CG			P-0006633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	288	459	0	ENST00000219476.3:c.600-13_629delinsCG		p.X200_splice	ENST00000219476	NM_000548.3	200						NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439126	52439131	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	CTGCAT	CTGCAT	-			P-0008648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	141	182	0	ENST00000460680.1:c.1111_1116del	p.Met371_Gln372del	p.M371_Q372del	ENST00000460680	NM_004656.3	371	ATGCAG/-					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101206	27101207	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0008648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	310	370	0	ENST00000324856.7:c.4488_4489del	p.Met1497ValfsTer5	p.M1497Vfs*5	ENST00000324856	NM_006015.4	1496	acCAtg/actg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	67	249	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49405905	49405905	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	82	482	0	ENST00000418115.1:c.233A>T	p.Asp78Val	p.D78V	ENST00000418115	NM_001664.2	78	gAt/gTt					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67200877	67200877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	57	396	0	ENST00000312629.5:c.865C>A	p.Pro289Thr	p.P289T	ENST00000312629	NM_003952.2	289	Ccc/Acc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591892	48591892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	119	459	0	ENST00000342988.3:c.1055G>T	p.Gly352Val	p.G352V	ENST00000342988	NM_005359.5	352	gGa/gTa					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242794439	242794439	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	127	687	0	ENST00000334409.5:c.503C>A	p.Thr168Asn	p.T168N	ENST00000334409	NM_005018.2	168	aCc/aAc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72821214	72821214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	199	703	0	ENST00000268489.5:c.10961C>T	p.Ser3654Leu	p.S3654L	ENST00000268489	NM_006885.3	3654	tCg/tTg					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023864	31023864	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008332-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	96	332	0	ENST00000375687.4:c.3349C>T	p.Pro1117Ser	p.P1117S	ENST00000375687	NM_015338.5	1117	Ccc/Tcc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	121	382	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	71	610	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371683	55371683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	52	390	0	ENST00000297316.4:c.373C>T	p.Arg125Cys	p.R125C	ENST00000297316	NM_022454.3	125	Cgc/Tgc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	95	428	3	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188317	32188317	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144492578		P-0007975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	57	509	1	ENST00000375023.3:c.1024G>A	p.Val342Met	p.V342M	ENST00000375023	NM_004557.3	342	Gtg/Atg					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71026841	71026842	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0007975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1084	58	484	0	ENST00000318789.4:c.1380_1381del	p.Asn461ArgfsTer4	p.N461Rfs*4	ENST00000318789	NM_032682.5	460	aaGAac/aaac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0004361-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			250	215	255	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0004361-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			257	67	192	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190670377	190670377	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0004361-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			191	84	282	0	ENST00000441310.2:c.316-1G>T		p.X106_splice	ENST00000441310	NM_000534.4	106						NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42003281	42003281	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0004361-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			379	197	542	1	ENST00000219905.7:c.2818A>T	p.Lys940Ter	p.K940*	ENST00000219905	NM_001164273.1	940	Aag/Tag					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88679129	88679129	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0004361-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			137	113	281	0	ENST00000360948.2:c.907+1G>T		p.X303_splice	ENST00000360948	NM_001012338.2	303						NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88727529	88727529	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0004361-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			131	71	245	1	ENST00000360948.2:c.250C>T	p.His84Tyr	p.H84Y	ENST00000360948	NM_001012338.2	84	Cac/Tac					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56774132	56774132	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004361-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			535	99	453	0	ENST00000337432.4:c.483G>T	p.Glu161Asp	p.E161D	ENST00000337432	NM_058216.2	161	gaG/gaT					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27840006	27840006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004361-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	137	519	0	ENST00000328488.2:c.88G>T	p.Ala30Ser	p.A30S	ENST00000328488	NM_003533.2	30	Gct/Tct					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115728	8115728	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004361-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			331	48	410	1	ENST00000346208.3:c.1074G>T	p.Lys358Asn	p.K358N	ENST00000346208		358	aaG/aaT					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57861837	57861837	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004361-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			548	98	525	0	ENST00000228682.2:c.1138C>T	p.Arg380Ter	p.R380*	ENST00000228682	NM_005269.2	380	Cga/Tga					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31386370	31386370	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004361-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			369	55	333	1	ENST00000328111.2:c.1595G>T	p.Cys532Phe	p.C532F	ENST00000328111	NM_006892.3	532	tGt/tTt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937374	76937374	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004361-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			222	13	283	0	ENST00000373344.5:c.3374C>A	p.Ser1125Tyr	p.S1125Y	ENST00000373344	NM_000489.3	1125	tCt/tAt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123191772	123191772	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004361-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			411	87	409	0	ENST00000218089.9:c.1361A>G	p.Gln454Arg	p.Q454R	ENST00000218089	NM_001042749.1	454	cAa/cGa					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0006476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	288	558	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	87	445	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	339	876	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9862896	9862896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	86	759	0	ENST00000330684.3:c.2407G>A	p.Glu803Lys	p.E803K	ENST00000330684	NM_001134407.1	803	Gag/Aag					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58145431	58145431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	289	577	1	ENST00000257904.6:c.70C>T	p.Arg24Cys	p.R24C	ENST00000257904	NM_000075.3	24	Cgt/Tgt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858184	9858184	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	109	821	0	ENST00000330684.3:c.3217G>A	p.Glu1073Lys	p.E1073K	ENST00000330684	NM_001134407.1	1073	Gaa/Aaa					NEWRECORD																																																																									
VTCN1	0	MSKCC	GRCh37	1	117699300	117699300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	96	721	1	ENST00000369458.3:c.341C>T	p.Ser114Phe	p.S114F	ENST00000369458	NM_024626.3	114	tCt/tTt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713694	30713694	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	217	508	0	ENST00000359013.4:c.1094A>G	p.His365Arg	p.H365R	ENST00000359013	NM_001024847.2	365	cAt/cGt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152012382	152012382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	62	572	2	ENST00000262189.6:c.431C>T	p.Ser144Phe	p.S144F	ENST00000262189	NM_170606.2	144	tCc/tTc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28608446	28608446	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	158	636	2	ENST00000241453.7:c.1696T>A	p.Tyr566Asn	p.Y566N	ENST00000241453	NM_004119.2	566	Tac/Aac					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32950860	32950860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	222	830	0	ENST00000380152.3:c.8686C>T	p.Arg2896Cys	p.R2896C	ENST00000380152		2896	Cgt/Tgt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916198	9916198	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	56	663	0	ENST00000330684.3:c.2091C>G	p.Asn697Lys	p.N697K	ENST00000330684	NM_001134407.1	697	aaC/aaG					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5273456	5273456	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	58	646	0	ENST00000357368.4:c.376C>T	p.Arg126Ter	p.R126*	ENST00000357368	NM_002850.3	126	Cga/Tga					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15968916	15968916	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	100	284	0	ENST00000268712.3:c.4834A>G	p.Thr1612Ala	p.T1612A	ENST00000268712	NM_006311.3	1612	Aca/Gca					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911651	32911661	+	frameshift_variant	Frame_Shift_Del	DEL	AGATAATCAAA	AGATAATCAAA	-			P-0007366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	121	376	1	ENST00000380152.3:c.3162_3172del	p.Asp1054GlufsTer9	p.D1054Efs*9	ENST00000380152		1053	ttAGATAATCAAAag/ttag					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	44	293	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	137	409	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009619-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	178	421	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202131463	202131463	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004747-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	73	290	0	ENST00000358485.4:c.431A>T	p.Glu144Val	p.E144V	ENST00000358485	NM_001080125.1	144	gAg/gTg					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55964321	55964332	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	CTGGGGAATTCC	CTGGGGAATTCC	-			P-0008069-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	182	562	0	ENST00000263923.4:c.2481_2492del	p.Trp827_Arg831delinsTer	p.W827_R831delins*	ENST00000263923	NM_002253.2	827	tgGGAATTCCCCAGa/tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	218	409	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	271	477	2	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164591	47164591	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	134	438	0	ENST00000409792.3:c.1535C>G	p.Ser512Ter	p.S512*	ENST00000409792	NM_014159.6	512	tCa/tGa					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29092948	29092948	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201206424		P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	171	459	0	ENST00000328354.6:c.1036C>T	p.Arg346Cys	p.R346C	ENST00000328354	NM_007194.3	346	Cgt/Tgt					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61145620	61145620	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	147	486	0	ENST00000295025.8:c.732C>G	p.Phe244Leu	p.F244L	ENST00000295025	NM_002908.2	244	ttC/ttG					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242794494	242794494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	184	345	0	ENST00000334409.5:c.448G>C	p.Glu150Gln	p.E150Q	ENST00000334409	NM_005018.2	150	Gaa/Caa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164900	47164900	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	127	374	0	ENST00000409792.3:c.1226C>G	p.Ser409Cys	p.S409C	ENST00000409792	NM_014159.6	409	tCt/tGt					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119634991	119634991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	78	385	0	ENST00000316626.5:c.508G>T	p.Ala170Ser	p.A170S	ENST00000316626		170	Gcc/Tcc					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143130170	143130170	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	93	353	0	ENST00000262992.4:c.846G>T	p.Glu282Asp	p.E282D	ENST00000262992	NM_001101669.1	282	gaG/gaT					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151884437	151884437	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	171	387	0	ENST00000262189.6:c.4918G>T	p.Glu1640Ter	p.E1640*	ENST00000262189	NM_170606.2	1640	Gag/Tag					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5077452	5077452	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	53	257	0	ENST00000381652.3:c.1865-1G>C		p.X622_splice	ENST00000381652	NM_004972.3	622						NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98211483	98211483	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	260	334	0	ENST00000331920.6:c.3672G>C	p.Glu1224Asp	p.E1224D	ENST00000331920	NM_000264.3	1224	gaG/gaC					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57864883	57864883	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	463	627	0	ENST00000228682.2:c.2360C>G	p.Ser787Cys	p.S787C	ENST00000228682	NM_005269.2	787	tCt/tGt					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99434821	99434821	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	180	265	0	ENST00000268035.6:c.908G>T	p.Cys303Phe	p.C303F	ENST00000268035	NM_000875.3	303	tGc/tTc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220382	1220382	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	247	435	0	ENST00000326873.7:c.475C>G	p.Gln159Glu	p.Q159E	ENST00000326873	NM_000455.4	159	Cag/Gag					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7141823	7141823	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	235	371	0	ENST00000302850.5:c.2547G>C	p.Lys849Asn	p.K849N	ENST00000302850	NM_000208.2	849	aaG/aaC					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600378	10600378	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	332	531	0	ENST00000171111.5:c.1477G>A	p.Glu493Lys	p.E493K	ENST00000171111	NM_203500.1	493	Gag/Aag					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11145662	11145662	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	242	398	0	ENST00000344626.4:c.4024G>T	p.Glu1342Ter	p.E1342*	ENST00000344626	NM_003072.3	1342	Gag/Tag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31024053	31024053	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	217	422	0	ENST00000375687.4:c.3538G>C	p.Asp1180His	p.D1180H	ENST00000375687	NM_015338.5	1180	Gat/Cat					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29130673	29130673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	207	288	0	ENST00000328354.6:c.37C>T	p.His13Tyr	p.H13Y	ENST00000328354	NM_007194.3	13	Cat/Tat					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42003375	42003375	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	305	623	0	ENST00000219905.7:c.2913del	p.Gln972ArgfsTer22	p.Q972Rfs*22	ENST00000219905	NM_001164273.1	971	cGg/cg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	129	614	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0006105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	178	630	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	77	592	0	ENST00000349496.5:c.109T>G	p.Ser37Ala	p.S37A	ENST00000349496	NM_001904.3	37	Tct/Gct					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180057800	180057800	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0006105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	66	359	0	ENST00000261937.6:c.156-1G>A		p.X52_splice	ENST00000261937	NM_182925.4	52						NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720850	89720850	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	53	273	0	ENST00000371953.3:c.1001A>G	p.Asn334Ser	p.N334S	ENST00000371953	NM_000314.4	334	aAc/aGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	273	452	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128205052	128205052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	83	423	0	ENST00000341105.2:c.389C>A	p.Ala130Asp	p.A130D	ENST00000341105	NM_032638.4	130	gCt/gAt					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670720	134670720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	113	377	0	ENST00000398015.3:c.631A>G	p.Thr211Ala	p.T211A	ENST00000398015	NM_004441.4	211	Aca/Gca					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69633631	69633631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	55	63	0	ENST00000334134.2:c.71G>A	p.Arg24Gln	p.R24Q	ENST00000334134	NM_005247.2	24	cGg/cAg					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412637	63412637	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006880-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	196	470	0	ENST00000330258.3:c.530G>A	p.Arg177His	p.R177H	ENST00000330258	NM_152424.3	177	cGc/cAc					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18534791	18534791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	67	531	1	ENST00000266497.5:c.1849C>A	p.Gln617Lys	p.Q617K	ENST00000266497		617	Cag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100077	27100080	+	frameshift_variant	Frame_Shift_Del	DEL	GCCT	GCCT	-			P-0008795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	222	597	0	ENST00000324856.7:c.3874_3877del	p.Pro1292GlufsTer2	p.P1292Efs*2	ENST00000324856	NM_006015.4	1291	gaGCCT/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579505	7579506	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0008795-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	185	443	0	ENST00000269305.4:c.181_182del	p.Asp61Ter	p.D61*	ENST00000269305	NM_001126112.2	61	GAt/t					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	240574	240574	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	18	33	0	ENST00000264932.6:c.1534C>T	p.Arg512Ter	p.R512*	ENST00000264932	NM_004168.2	512	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175507	112175507	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	364	346	0	ENST00000257430.4:c.4216C>T	p.Gln1406Ter	p.Q1406*	ENST00000257430	NM_000038.5	1406	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	994	470	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158626924	158626924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1160	131	535	2	ENST00000263640.3:c.746C>T	p.Thr249Met	p.T249M	ENST00000263640	NM_001105.4	249	aCg/aTg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169106	32169106	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	140	427	0	ENST00000375023.3:c.3927C>G	p.Asp1309Glu	p.D1309E	ENST00000375023	NM_004557.3	1309	gaC/gaG					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112926270	112926270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	186	484	0	ENST00000351677.2:c.1403C>T	p.Thr468Met	p.T468M	ENST00000351677	NM_002834.3	468	aCg/aTg					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112926893	112926893	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	252	391	2	ENST00000351677.2:c.1513G>A	p.Val505Ile	p.V505I	ENST00000351677	NM_002834.3	505	Gtc/Atc					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95557552	95557552	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	44	401	1	ENST00000343455.3:c.5515C>T	p.Arg1839Trp	p.R1839W	ENST00000343455	NM_177438.2	1839	Cgg/Tgg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41525902	41525902	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007126-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	334	374	0	ENST00000263253.7:c.1177T>A	p.Cys393Ser	p.C393S	ENST00000263253	NM_001429.3	393	Tgt/Agt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11259324	11259324	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	255	421	0	ENST00000361445.4:c.4244C>G	p.Ser1415Cys	p.S1415C	ENST00000361445	NM_004958.3	1415	tCt/tGt					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118375474	118375474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	90	365	0	ENST00000534358.1:c.8867C>T	p.Ser2956Leu	p.S2956L	ENST00000534358	NM_005933.3	2956	tCa/tTa					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993640	72993640	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0007515-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	650	424	0	ENST00000268489.5:c.405C>G	p.Tyr135Ter	p.Y135*	ENST00000268489	NM_006885.3	135	taC/taG					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0007624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	21	418	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	25	435	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	135	393	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248732	212248732	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	276	357	0	ENST00000342788.4:c.3535G>T	p.Asp1179Tyr	p.D1179Y	ENST00000342788	NM_005235.2	1179	Gac/Tac					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55955113	55955113	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	220	403	2	ENST00000263923.4:c.3432C>A	p.His1144Gln	p.H1144Q	ENST00000263923	NM_002253.2	1144	caC/caA					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55976668	55976668	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	499	486	0	ENST00000263923.4:c.1157T>C	p.Met386Thr	p.M386T	ENST00000263923	NM_002253.2	386	aTg/aCg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	488	400	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030485	49030485	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	69	173	0	ENST00000267163.4:c.1960G>T	p.Val654Leu	p.V654L	ENST00000267163	NM_000321.2	654	Gtg/Ttg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993417	72993417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1487	304	869	1	ENST00000268489.5:c.628G>T	p.Gly210Cys	p.G210C	ENST00000268489	NM_006885.3	210	Ggc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	406	591	2	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40491341	40491341	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	345	427	0	ENST00000264657.5:c.459G>T	p.Lys153Asn	p.K153N	ENST00000264657	NM_139276.2	153	aaG/aaT					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17943502	17943502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	252	336	0	ENST00000458235.1:c.2506G>A	p.Val836Met	p.V836M	ENST00000458235	NM_000215.3	836	Gtg/Atg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47028820	47028821	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	T			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	444	628	0	ENST00000329236.7:c.124_125delinsT	p.Arg42PhefsTer43	p.R42Ffs*43	ENST00000329236	NM_001204466.1	42	CGt/Tt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42019560	42019560	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	620	729	1	ENST00000219905.7:c.3614del	p.Gly1205GlufsTer15	p.G1205Efs*15	ENST00000219905	NM_001164273.1	1205	Gga/ga					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3786719	3786719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	211	672	1	ENST00000262367.5:c.4492C>T	p.Arg1498Ter	p.R1498*	ENST00000262367	NM_004380.2	1498	Cga/Tga					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593599	55593649	+	inframe_deletion	In_Frame_Del	DEL	ACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGA	ACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGA	-			P-0008468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	283	566	0	ENST00000288135.5:c.1665_1715del	p.Gln556_Asp572del	p.Q556_D572del	ENST00000288135	NM_000222.2	555	gtACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGAc/gtc					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	87	186	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442095	52442095	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0007061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	158	231	2	ENST00000460680.1:c.256-2A>T		p.X86_splice	ENST00000460680	NM_004656.3	86						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0006883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	399	342	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576849	7576855	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTACCTG	GTACCTG	-			P-0006883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	113	291	0	ENST00000269305.4:c.991_993+4del		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	265	337	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692893	89692893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007845-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	96	211	0	ENST00000371953.3:c.377C>T	p.Ala126Val	p.A126V	ENST00000371953	NM_000314.4	126	gCt/gTt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	183	519	0	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151864458	151864458	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	91	293	0	ENST00000262189.6:c.9523T>C	p.Ser3175Pro	p.S3175P	ENST00000262189	NM_170606.2	3175	Tca/Cca					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2223973	2223973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0002071-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			717	589	661	0	ENST00000326181.6:c.1187A>G	p.Gln396Arg	p.Q396R	ENST00000326181	NM_032271.2	396	cAg/cGg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	39	455	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	26	556	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259028	89259028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	10	302	0	ENST00000336596.2:c.172G>A	p.Val58Met	p.V58M	ENST00000336596	NM_005233.5	58	Gtg/Atg					NEWRECORD																																																																									
IDH2	0	MSKCC	GRCh37	15	90631935	90631935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	10	545	1	ENST00000330062.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000330062	NM_002168.2	140	Cgg/Tgg					NEWRECORD																																																																									
IDH2	0	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	170	152	0	ENST00000330062.3:c.514A>T	p.Arg172Trp	p.R172W	ENST00000330062	NM_002168.2	172	Agg/Tgg					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30032794	30032794	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	290	136	2	ENST00000338641.4:c.169C>T	p.Arg57Ter	p.R57*	ENST00000338641	NM_000268.3	57	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	199	152	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	186	303	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0006830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	194	364	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18278049	18278049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	510	375	1	ENST00000222254.8:c.1669G>T	p.Asp557Tyr	p.D557Y	ENST00000222254	NM_005027.3	557	Gac/Tac					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212652853	212652853	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	180	355	0	ENST00000342788.4:c.453G>C	p.Gln151His	p.Q151H	ENST00000342788	NM_005235.2	151	caG/caC					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106547379	106547379	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	174	260	0	ENST00000369096.4:c.616G>A	p.Glu206Lys	p.E206K	ENST00000369096	NM_001198.3	206	Gaa/Aaa					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36171623	36171624	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0006830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	157	221	0	ENST00000300305.3:c.941_942delCT	p.Ser314CysfsTer285	p.S314Cfs*285	ENST00000300305		314	tCT/t					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589150	67589150	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0006830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	141	250	0	ENST00000274335.5:c.1139del	p.Leu380Ter	p.L380*	ENST00000274335		380	Tta/ta					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0009194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	100	280	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484275	8484275	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	146	299	0	ENST00000356435.5:c.3257C>G	p.Thr1086Arg	p.T1086R	ENST00000356435		1086	aCa/aGa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380206	25380206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	154	331	0	ENST00000256078.4:c.252A>G	p.Ile84Met	p.I84M	ENST00000256078	NM_033360.2	84	atA/atG					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944762	31944762	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	87	143	1	ENST00000340398.3:c.339C>A	p.His113Gln	p.H113Q	ENST00000340398	NM_001013699.2	113	caC/caA					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29008251	29008251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	142	381	1	ENST00000282397.4:c.620G>T	p.Cys207Phe	p.C207F	ENST00000282397	NM_002019.4	207	tGt/tTt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10599952	10599952	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009194-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	213	402	1	ENST00000171111.5:c.1624G>T	p.Glu542Ter	p.E542*	ENST00000171111	NM_203500.1	542	Gag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	114	324	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220717	1220717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0007123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	107	307	0	ENST00000326873.7:c.734+1G>T		p.X245_splice	ENST00000326873	NM_000455.4	245						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602286	10602286	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	158	348	1	ENST00000171111.5:c.1292C>T	p.Ser431Phe	p.S431F	ENST00000171111	NM_203500.1	431	tCc/tTc					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56168735	56168735	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	98	287	1	ENST00000399503.3:c.1589G>T	p.Gly530Val	p.G530V	ENST00000399503	NM_005921.1	530	gGa/gTa					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143350325	143350325	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	67	174	0	ENST00000262992.4:c.136+1G>T		p.X46_splice	ENST00000262992	NM_001101669.1	46						NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20480158	20480158	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	113	320	0	ENST00000346618.3:c.475G>T	p.Ala159Ser	p.A159S	ENST00000346618	NM_001949.4	159	Gct/Tct					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900306	101900306	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	114	343	0	ENST00000374994.4:c.740A>T	p.Glu247Val	p.E247V	ENST00000374994	NM_004612.2	247	gAg/gTg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49422949	49422949	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	80	443	1	ENST00000301067.7:c.14146G>T	p.Gly4716Trp	p.G4716W	ENST00000301067	NM_003482.3	4716	Ggg/Tgg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70352698	70352698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	78	397	0	ENST00000374080.3:c.4419G>A	p.Met1473Ile	p.M1473I	ENST00000374080		1473	atG/atA					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87549139	87549139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	243	325	0	ENST00000277120.3:c.1696G>A	p.Gly566Arg	p.G566R	ENST00000277120		566	Gga/Aga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578313	7578425	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCAT	AGAGGCCTGGGGACCCTGGGCAACCAGCCCTGTCGTCTCTCCAGCCCCAGCTGCTCACCATCGCTATCTGAGCAGCGCTCATGGTGGGGGCAGCGCCTCACAACCTCCGTCAT	-			P-0004775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	453	260	0	ENST00000269305.4:c.505_560-24del		p.X169_splice	ENST00000269305	NM_001126112.2	169						NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056053	26056067	+	inframe_deletion	In_Frame_Del	DEL	CCTTGGGCTTAGCGG	CCTTGGGCTTAGCGG	-	rs756916945		P-0004775-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	96	194	0	ENST00000343677.2:c.590_604del	p.Ala197_Lys201del	p.A197_K201del	ENST00000343677	NM_005319.3	197	gCCGCTAAGCCCAAGGtt/gtt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	175	559	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	49	484	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	419	786	2	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	9	493	0	ENST00000288602.6:c.1406G>T	p.Gly469Val	p.G469V	ENST00000288602	NM_004333.4	469	gGa/gTa					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37864656	37864656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	401	850	0	ENST00000269571.5:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000269571		103	cGa/cAa					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45856356	45856356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	373	872	0	ENST00000391945.4:c.1816G>C	p.Glu606Gln	p.E606Q	ENST00000391945	NM_000400.3	606	Gag/Cag					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43812261	43812261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	217	622	0	ENST00000372470.3:c.1126C>T	p.His376Tyr	p.H376Y	ENST00000372470	NM_005373.2	376	Cac/Tac					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120478170	120478170	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	192	566	1	ENST00000256646.2:c.3580C>T	p.Gln1194Ter	p.Q1194*	ENST00000256646	NM_024408.3	1194	Cag/Tag					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551334	150551334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	336	914	1	ENST00000369026.2:c.673G>A	p.Glu225Lys	p.E225K	ENST00000369026	NM_021960.4	225	Gag/Aag					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25536793	25536793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	484	822	2	ENST00000264709.3:c.61G>A	p.Glu21Lys	p.E21K	ENST00000264709	NM_175629.2	21	Gag/Aag					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227662433	227662433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	125	444	1	ENST00000305123.5:c.1022C>T	p.Ser341Leu	p.S341L	ENST00000305123	NM_005544.2	341	tCg/tTg					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89528627	89528627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	142	571	0	ENST00000336596.2:c.2927C>T	p.Ser976Leu	p.S976L	ENST00000336596	NM_005233.5	976	tCa/tTa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157173	106157173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	99	448	2	ENST00000380013.4:c.2074G>A	p.Glu692Lys	p.E692K	ENST00000380013	NM_001127208.2	692	Gaa/Aaa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532702	187532702	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	133	693	1	ENST00000441802.2:c.9691G>A	p.Glu3231Lys	p.E3231K	ENST00000441802	NM_005245.3	3231	Gag/Aag					NEWRECORD																																																																									
CCND3	0	MSKCC	GRCh37	6	41903779	41903779	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	341	725	1	ENST00000372991.4:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000372991	NM_001760.3	260	Cag/Tag					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150004728	150004728	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	130	583	1	ENST00000253339.5:c.1497A>T	p.Lys499Asn	p.K499N	ENST00000253339		499	aaA/aaT					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152129213	152129213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	426	944	2	ENST00000206249.3:c.166G>A	p.Glu56Lys	p.E56K	ENST00000206249	NM_000125.3	56	Gag/Aag					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157100532	157100532	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	358	448	0	ENST00000346085.5:c.1469G>A	p.Trp490Ter	p.W490*	ENST00000346085	NM_020732.3	490	tGg/tAg					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157495181	157495181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	247	594	0	ENST00000346085.5:c.3065C>T	p.Ser1022Phe	p.S1022F	ENST00000346085	NM_020732.3	1022	tCc/tTc					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6431631	6431631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			133	71	336	0	ENST00000356142.4:c.184G>A	p.Glu62Lys	p.E62K	ENST00000356142	NM_018890.3	62	Gaa/Aaa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339409	116339409	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	85	353	0	ENST00000397752.3:c.271G>A	p.Glu91Lys	p.E91K	ENST00000397752	NM_000245.2	91	Gaa/Aaa					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80646085	80646085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	68	147	0	ENST00000286548.4:c.67G>A	p.Asp23Asn	p.D23N	ENST00000286548	NM_002072.3	23	Gac/Aac					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104263941	104263941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	112	166	0	ENST00000369902.3:c.32G>A	p.Gly11Asp	p.G11D	ENST00000369902	NM_016169.3	11	gGc/gAc					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	402	661	0	ENST00000311189.7:c.38G>A	p.Gly13Asp	p.G13D	ENST00000311189		13	gGt/gAt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243472	46243472	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	82	681	0	ENST00000334344.6:c.1825C>T	p.Gln609Ter	p.Q609*	ENST00000334344	NM_152641.2	609	Cag/Tag					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73355074	73355074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	70	430	0	ENST00000377767.4:c.296G>A	p.Arg99Lys	p.R99K	ENST00000377767	NM_014953.3	99	aGa/aAa					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91295100	91295100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	66	522	0	ENST00000355112.3:c.883G>A	p.Asp295Asn	p.D295N	ENST00000355112	NM_000057.2	295	Gat/Aat					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857944	9857944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	68	525	0	ENST00000330684.3:c.3457G>A	p.Asp1153Asn	p.D1153N	ENST00000330684	NM_001134407.1	1153	Gat/Aat					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14016009	14016009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	60	463	0	ENST00000311895.7:c.329C>T	p.Thr110Ile	p.T110I	ENST00000311895	NM_005236.2	110	aCa/aTa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29653079	29653079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	45	550	0	ENST00000358273.4:c.5077C>T	p.His1693Tyr	p.H1693Y	ENST00000358273	NM_001042492.2	1693	Cat/Tat					NEWRECORD																																																																									
DNAJB1	0	MSKCC	GRCh37	19	14626772	14626772	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	248	1050	2	ENST00000254322.2:c.1003G>A	p.Glu335Lys	p.E335K	ENST00000254322	NM_006145.1	335	Gag/Aag					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17937611	17937611	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	397	1020	1	ENST00000458235.1:c.3316G>A	p.Glu1106Lys	p.E1106K	ENST00000458235	NM_000215.3	1106	Gag/Aag					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36421175	36421175	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	128	411	0	ENST00000300305.3:c.22G>A	p.Glu8Lys	p.E8K	ENST00000300305		8	Gag/Aag					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44922785	44922785	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	377	423	0	ENST00000377967.4:c.1646G>A	p.Arg549Lys	p.R549K	ENST00000377967	NM_021140.2	549	aGa/aAa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44942733	44942733	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	118	401	1	ENST00000377967.4:c.3313A>T	p.Lys1105Ter	p.K1105*	ENST00000377967	NM_021140.2	1105	Aaa/Taa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023875	27023875	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	157	190	0	ENST00000324856.7:c.983del	p.Gly328AlafsTer35	p.G328Afs*35	ENST00000324856	NM_006015.4	327	aaG/aa					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38950398	38950398	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	37	466	0	ENST00000357387.3:c.3552del	p.Lys1184AsnfsTer20	p.K1184Nfs*20	ENST00000357387	NM_152756.3	1184	aaA/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	150	449	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67592087	67592087	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	167	556	1	ENST00000274335.5:c.1903G>T	p.Glu635Ter	p.E635*	ENST00000274335		635	Gaa/Taa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32972801	32972801	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	117	400	1	ENST00000380152.3:c.10151G>A	p.Arg3384Gln	p.R3384Q	ENST00000380152		3384	cGa/cAa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878132	151878154	+	frameshift_variant	Frame_Shift_Del	DEL	TGTATCAGGTGGCCTTACCAACG	TGTATCAGGTGGCCTTACCAACG	-			P-0005712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	111	451	0	ENST00000262189.6:c.6791_6813del	p.Pro2264LeufsTer6	p.P2264Lfs*6	ENST00000262189	NM_170606.2	2264	cCGTTGGTAAGGCCACCTGATACA/c					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	236	360	0	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212989551	212989551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	168	360	0	ENST00000342788.4:c.160G>A	p.Glu54Lys	p.E54K	ENST00000342788	NM_005235.2	54	Gaa/Aaa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52438535	52438535	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	193	352	0	ENST00000460680.1:c.1184C>G	p.Ser395Ter	p.S395*	ENST00000460680	NM_004656.3	395	tCa/tGa					NEWRECORD																																																																									
PDPK1	0	MSKCC	GRCh37	16	2647657	2647657	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	226	561	0	ENST00000342085.4:c.1560C>G	p.Asn520Lys	p.N520K	ENST00000342085	NM_002613.4	520	aaC/aaG					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0005395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	387	517	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202151240	202151240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	724	561	1	ENST00000358485.4:c.1540G>A	p.Asp514Asn	p.D514N	ENST00000358485	NM_001080125.1	514	Gac/Aac					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189584521	189584521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1880	348	492	0	ENST00000264731.3:c.817G>T	p.Ala273Ser	p.A273S	ENST00000264731	NM_003722.4	273	Gcc/Tcc					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90982782	90982782	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0005395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	279	213	0	ENST00000265433.3:c.706A>T	p.Lys236Ter	p.K236*	ENST00000265433	NM_002485.4	236	Aag/Tag					NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139818386	139818400	+	protein_altering_variant	In_Frame_Del	DEL	GTCCCTCTTCTTTGT	GTCCCTCTTCTTTGT	CATTCG			P-0005395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1679	342	695	0	ENST00000247668.2:c.1221_1235delinsCATTCG	p.Ser408_Val412delinsIleArg	p.S408_V412delinsIR	ENST00000247668	NM_021138.3	407	ctGTCCCTCTTCTTTGTg/ctCATTCGg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	117	422	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	191	556	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55240780	55240780	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150423237		P-0004706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	181	468	0	ENST00000275493.2:c.2024G>A	p.Arg675Gln	p.R675Q	ENST00000275493	NM_005228.3	675	cGg/cAg					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	401951	401951	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004706-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	225	630	0	ENST00000399788.2:c.4840A>G	p.Asn1614Asp	p.N1614D	ENST00000399788	NM_001042603.1	1614	Aac/Gac					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49929216	49929216	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	369	847	2	ENST00000296474.3:c.3327C>G	p.Ile1109Met	p.I1109M	ENST00000296474	NM_002447.2	1109	atC/atG					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66189850	66189850	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1087	89	452	1	ENST00000273854.3:c.3096C>A	p.Asn1032Lys	p.N1032K	ENST00000273854	NM_004439.5	1032	aaC/aaA					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93982101	93982101	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	143	586	0	ENST00000369303.4:c.1364T>A	p.Leu455Gln	p.L455Q	ENST00000369303	NM_004440.3	455	cTg/cAg					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162864368	162864368	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	115	436	1	ENST00000366898.1:c.145G>T	p.Glu49Ter	p.E49*	ENST00000366898	NM_004562.2	49	Gag/Tag					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106515198	106515198	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146675267		P-0005594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	150	357	1	ENST00000359195.3:c.2341G>A	p.Glu781Lys	p.E781K	ENST00000359195	NM_002649.2	781	Gaa/Aaa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8499811	8499811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1256	82	476	0	ENST00000356435.5:c.2158G>A	p.Val720Ile	p.V720I	ENST00000356435		720	Gta/Ata					NEWRECORD																																																																									
CDKN2B	0	MSKCC	GRCh37	9	22006017	22006017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1332	128	506	4	ENST00000276925.6:c.386C>T	p.Ala129Val	p.A129V	ENST00000276925	NM_004936.3	129	gCa/gTa					NEWRECORD																																																																									
EED	0	MSKCC	GRCh37	11	85989482	85989482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	213	432	1	ENST00000263360.6:c.1241G>A	p.Arg414Gln	p.R414Q	ENST00000263360	NM_003797.3	414	cGa/cAa					NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40458310	40458310	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	73	398	0	ENST00000345506.4:c.1525G>A	p.Glu509Lys	p.E509K	ENST00000345506	NM_003152.3	509	Gag/Aag					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411063	63411063	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	223	544	0	ENST00000330258.3:c.2104G>T	p.Glu702Ter	p.E702*	ENST00000330258	NM_152424.3	702	Gag/Tag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27088678	27088679	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0005594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	108	532	0	ENST00000324856.7:c.2287_2288delinsTT	p.Ser763Phe	p.S763F	ENST00000324856	NM_006015.4	763	AGt/TTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0004725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	40	344	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99136554	99136554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	38	343	0	ENST00000074304.5:c.43C>A	p.Arg15Ser	p.R15S	ENST00000074304	NM_001134224.1	15	Cgt/Agt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	38	399	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100183	27100183	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	35	381	0	ENST00000324856.7:c.3979C>T	p.Gln1327Ter	p.Q1327*	ENST00000324856	NM_006015.4	1327	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			824	189	519	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467946	66467946	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	70	448	0	ENST00000273854.3:c.323A>T	p.Asn108Ile	p.N108I	ENST00000273854	NM_004439.5	108	aAt/aTt					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372244	55372244	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	20	182	0	ENST00000297316.4:c.934C>G	p.Gln312Glu	p.Q312E	ENST00000297316	NM_022454.3	312	Cag/Gag					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72495749	72495749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	264	332	1	ENST00000477973.2:c.321C>T	p.Ala108Val	p.A108V	ENST00000477973	NM_012234.5	108	gCc/gTc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431508	49431508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	55	479	0	ENST00000301067.7:c.9631G>A	p.Glu3211Lys	p.E3211K	ENST00000301067	NM_003482.3	3211	Gaa/Aaa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32905055	32905055	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0006749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	159	166	0	ENST00000380152.3:c.682-1G>C		p.X228_splice	ENST00000380152		228						NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857622	9857622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	130	338	0	ENST00000330684.3:c.3779C>A	p.Pro1260Gln	p.P1260Q	ENST00000330684	NM_001134407.1	1260	cCa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578213	7578231	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAGTGTTTCTGTCATCC	AAAAGTGTTTCTGTCATCC	-			P-0006749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	312	521	0	ENST00000269305.4:c.618_636delGGATGACAGAAACACTTTT	p.Leu206PhefsTer35	p.L206Ffs*35	ENST00000269305	NM_001126112.2	206	ttGGATGACAGAAACACTTTT/tt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	103	323	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	236	648	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	174	418	1	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741454	145741454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	91	651	0	ENST00000428558.2:c.1049G>C	p.Arg350Thr	p.R350T	ENST00000428558	NM_004260.3	350	aGg/aCg					NEWRECORD																																																																									
RAD51B	0	MSKCC	GRCh37	14	68290313	68290313	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	141	575	1	ENST00000487270.1:c.53G>A	p.Arg18His	p.R18H	ENST00000487270	NM_133509.3	18	cGt/cAt					NEWRECORD																																																																									
NFKBIA	0	MSKCC	GRCh37	14	35872556	35872556	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	208	565	0	ENST00000216797.5:c.347A>G	p.His116Arg	p.H116R	ENST00000216797	NM_020529.2	116	cAc/cGc					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45003749	45003749	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	197	373	0	ENST00000558401.1:c.5C>T	p.Ser2Phe	p.S2F	ENST00000558401	NM_004048.2	2	tCt/tTt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0007979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	33	447	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0007979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	17	498	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36932410	36932410	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201699446		P-0007979-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	73	872	2	ENST00000361632.4:c.2059G>A	p.Gly687Ser	p.G687S	ENST00000361632		687	Ggc/Agc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	241	393	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215609807	215609807	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	105	464	0	ENST00000260947.4:c.1887G>A	p.Trp629Ter	p.W629*	ENST00000260947	NM_000465.2	629	tgG/tgA					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174352	112174352	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	50	223	0	ENST00000257430.4:c.3061C>G	p.Leu1021Val	p.L1021V	ENST00000257430	NM_000038.5	1021	Cta/Gta					NEWRECORD																																																																									
BBC3	0	MSKCC	GRCh37	19	47729983	47730152	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTCCGCCAGCGAGAGCGAGGGCTGAGGACCTTGGAGAGGCAGAGGGGCGCGGTCAGCACCCACCACCCCTCCAGGCCTCGAGGTGTCTCGGCCTGCTCCCCTCTTTCCCAGCCACTGCTCCCCGCCTCATTTCTAGTGATCCCATCGCTAGTGAGTCAATTTCTCAGCTT	CTCCGCCAGCGAGAGCGAGGGCTGAGGACCTTGGAGAGGCAGAGGGGCGCGGTCAGCACCCACCACCCCTCCAGGCCTCGAGGTGTCTCGGCCTGCTCCCCTCTTTCCCAGCCACTGCTCCCCGCCTCATTTCTAGTGATCCCATCGCTAGTGAGTCAATTTCTCAGCTT	-			P-0008023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	30	103	0	ENST00000449228.1:c.378-141_406del		p.X126_splice	ENST00000449228	NM_001127240.2	126						NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40827957	40827978	+	frameshift_variant	Frame_Shift_Del	DEL	TCGGCAGAGGCCACAGGCCCCA	TCGGCAGAGGCCACAGGCCCCA	-			P-0008023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	50	262	0	ENST00000373198.4:c.2450_2471del	p.Met817ThrfsTer54	p.M817Tfs*54	ENST00000373198	NM_133170.3	817	aTGGGGCCTGTGGCCTCTGCCGAc/ac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0005289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	61	326	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266103	41266103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	45	365	0	ENST00000349496.5:c.100G>A	p.Gly34Arg	p.G34R	ENST00000349496	NM_001904.3	34	Gga/Aga					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	175958549	175958549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	55	473	1	ENST00000367669.3:c.1796G>T	p.Arg599Leu	p.R599L	ENST00000367669	NM_022457.5	599	cGt/cTt					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106196261	106196261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	46	312	0	ENST00000380013.4:c.4594C>T	p.Gln1532Ter	p.Q1532*	ENST00000380013	NM_001127208.2	1532	Cag/Tag					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32172085	32172085	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	48	487	0	ENST00000375023.3:c.2947T>C	p.Cys983Arg	p.C983R	ENST00000375023	NM_004557.3	983	Tgt/Cgt					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119149298	119149298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	59	409	0	ENST00000264033.4:c.1306C>G	p.Pro436Ala	p.P436A	ENST00000264033	NM_005188.3	436	Cct/Gct					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119149364	119149364	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	48	309	0	ENST00000264033.4:c.1372G>A	p.Asp458Asn	p.D458N	ENST00000264033	NM_005188.3	458	Gat/Aat					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433226	49433226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	38	387	0	ENST00000301067.7:c.8221G>T	p.Gly2741Trp	p.G2741W	ENST00000301067	NM_003482.3	2741	Ggg/Tgg					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134585	41134585	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	50	514	0	ENST00000379561.5:c.1043A>T	p.Tyr348Phe	p.Y348F	ENST00000379561	NM_002015.3	348	tAc/tTc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41572440	41572440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005289-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	53	473	0	ENST00000263253.7:c.4969G>A	p.Glu1657Lys	p.E1657K	ENST00000263253	NM_001429.3	1657	Gag/Aag					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26031970	26031970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	77	1279	0	ENST00000244661.2:c.319G>A	p.Asp107Asn	p.D107N	ENST00000244661	NM_003537.3	107	Gac/Aac					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	133	672	0	ENST00000206249.3:c.1607T>C	p.Leu536Pro	p.L536P	ENST00000206249	NM_000125.3	536	cTc/cCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	401	901	3	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71090479	71090479	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	147	679	1	ENST00000318789.4:c.869G>C	p.Ser290Thr	p.S290T	ENST00000318789	NM_032682.5	290	aGt/aCt					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26032007	26032007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	141	1381	0	ENST00000244661.2:c.282G>T	p.Gln94His	p.Q94H	ENST00000244661	NM_003537.3	94	caG/caT					NEWRECORD																																																																									
HIST1H3D	0	MSKCC	GRCh37	6	26197265	26197265	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1310	366	1651	0	ENST00000356476.2:c.214G>C	p.Val72Leu	p.V72L	ENST00000356476		72	Gtc/Ctc					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63553976	63553976	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	63	768	0	ENST00000307078.5:c.763C>G	p.Leu255Val	p.L255V	ENST00000307078	NM_004655.3	255	Ctg/Gtg					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	233628	233628	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	69	158	0	ENST00000264932.6:c.932G>T	p.Cys311Phe	p.C311F	ENST00000264932	NM_004168.2	311	tGt/tTt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46287328	46287328	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0005379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	52	324	0	ENST00000334344.6:c.5271+2T>A		p.X1757_splice	ENST00000334344	NM_152641.2	1757						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579717	7579717	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	77	401	1	ENST00000269305.4:c.79C>T	p.Pro27Ser	p.P27S	ENST00000269305	NM_001126112.2	27	Cct/Tct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	271	293	0	ENST00000269305.4:c.526T>C	p.Cys176Arg	p.C176R	ENST00000269305	NM_001126112.2	176	Tgc/Cgc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49037972	49037972	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	333	377	0	ENST00000267163.4:c.2211+1G>A		p.X737_splice	ENST00000267163	NM_000321.2	737						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162904	47162904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	107	486	0	ENST00000409792.3:c.3222G>T	p.Lys1074Asn	p.K1074N	ENST00000409792	NM_014159.6	1074	aaG/aaT					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425833	49425833	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	37	368	0	ENST00000301067.7:c.12655C>T	p.Gln4219Ter	p.Q4219*	ENST00000301067	NM_003482.3	4219	Cag/Tag					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123215285	123215285	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	172	293	0	ENST00000218089.9:c.2831C>G	p.Thr944Arg	p.T944R	ENST00000218089	NM_001042749.1	944	aCa/aGa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56167813	56167813	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	45	443	0	ENST00000399503.3:c.1378G>C	p.Glu460Gln	p.E460Q	ENST00000399503	NM_005921.1	460	Gaa/Caa					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103514569	103514569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	75	281	0	ENST00000355739.4:c.1070C>T	p.Ser357Leu	p.S357L	ENST00000355739	NM_000123.3	357	tCa/tTa					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15383631	15383631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	40	284	0	ENST00000263377.2:c.280C>T	p.Leu94Phe	p.L94F	ENST00000263377	NM_058243.2	94	Ctc/Ttc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578424	7578427	+	frameshift_variant	Frame_Shift_Del	DEL	ATGT	ATGT	-			P-0007518-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	356	273	0	ENST00000269305.4:c.503_506del	p.His168ArgfsTer5	p.H168Rfs*5	ENST00000269305	NM_001126112.2	168	cACATg/cg					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	97	480	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0005591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	25	454	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008882-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	104	415	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0009847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	44	428	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101907098	101907098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	74	518	0	ENST00000374994.4:c.1058G>T	p.Gly353Val	p.G353V	ENST00000374994	NM_004612.2	353	gGa/gTa					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156843704	156843704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	137	733	0	ENST00000524377.1:c.1130C>T	p.Ala377Val	p.A377V	ENST00000524377	NM_002529.3	377	gCc/gTc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29008033	29008033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	67	516	0	ENST00000282397.4:c.736C>T	p.His246Tyr	p.H246Y	ENST00000282397	NM_002019.4	246	Cat/Tat					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55973957	55973957	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	41	420	0	ENST00000263923.4:c.1359del	p.His454IlefsTer23	p.H454Ifs*23	ENST00000263923	NM_002253.2	453	ccG/cc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187524146	187524146	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	241	606	1	ENST00000441802.2:c.11393C>T	p.Pro3798Leu	p.P3798L	ENST00000441802	NM_005245.3	3798	cCg/cTg					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575422	64575422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	336	576	0	ENST00000337652.1:c.610C>T	p.His204Tyr	p.H204Y	ENST00000337652	NM_130803.2	204	Cac/Tac					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12043188	12043188	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	355	645	0	ENST00000353533.5:c.1073A>G	p.Tyr358Cys	p.Y358C	ENST00000353533	NM_003010.3	358	tAt/tGt					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115944	8115953	+	frameshift_variant	Frame_Shift_Del	DEL	TGGACCACAC	TGGACCACAC	-			P-0005781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	314	332	0	ENST00000346208.3:c.1290_1299del	p.Gly431ThrfsTer41	p.G431Tfs*41	ENST00000346208		430	ttTGGACCACAC/tt					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37880220	37880220	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	138	490	0	ENST00000269571.5:c.2264T>C	p.Leu755Ser	p.L755S	ENST00000269571		755	tTg/tCg					NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	82	241	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133218861	133218861	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	93	336	2	ENST00000320574.5:c.5075C>A	p.Pro1692His	p.P1692H	ENST00000320574	NM_006231.2	1692	cCt/cAt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68842595	68842595	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0008007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	64	329	0	ENST00000261769.5:c.532-1G>A		p.X178_splice	ENST00000261769	NM_004360.3	178						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0009928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	104	157	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10032299	10032299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	144	192	0	ENST00000330684.3:c.524C>T	p.Thr175Ile	p.T175I	ENST00000330684	NM_001134407.1	175	aCt/aTt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141525	11141525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	196	357	0	ENST00000344626.4:c.3502G>A	p.Ala1168Thr	p.A1168T	ENST00000344626	NM_003072.3	1168	Gca/Aca					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1223003	1223003	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	142	192	0	ENST00000326873.7:c.941del	p.Pro314LeufsTer22	p.P314Lfs*22	ENST00000326873	NM_000455.4	314	Cct/ct					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37879601	37879602	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0009928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	146	275	0	ENST00000269571.5:c.1976_1977inv	p.Val659Glu	p.V659E	ENST00000269571		659	gTT/gAA					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023202	27023202	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	58	86	0	ENST00000324856.7:c.308C>A	p.Ser103Ter	p.S103*	ENST00000324856	NM_006015.4	103	tCg/tAg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16264491	16264491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	60	250	0	ENST00000375759.3:c.10694G>A	p.Arg3565Gln	p.R3565Q	ENST00000375759	NM_015001.2	3565	cGa/cAa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602340	10602340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	145	276	0	ENST00000171111.5:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000171111	NM_203500.1	413	cGt/cTt					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225342959	225342959	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	184	485	0	ENST00000264414.4:c.2133G>A	p.Met711Ile	p.M711I	ENST00000264414	NM_003590.4	711	atG/atA					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55133597	55133597	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	57	300	0	ENST00000257290.5:c.901G>A	p.Glu301Lys	p.E301K	ENST00000257290	NM_006206.4	301	Gaa/Aaa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56111615	56111615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	59	106	0	ENST00000399503.3:c.215A>T	p.Gln72Leu	p.Q72L	ENST00000399503	NM_005921.1	72	cAg/cTg					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43604535	43604535	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	136	287	0	ENST00000355710.3:c.1120G>A	p.Val374Met	p.V374M	ENST00000355710	NM_020975.4	374	Gtg/Atg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48916734	48916734	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0008297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	74	310	0	ENST00000267163.4:c.265-1G>C		p.X89_splice	ENST00000267163	NM_000321.2	89						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578447	7578447	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008297-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	102	250	0	ENST00000269305.4:c.483del	p.Ile162SerfsTer8	p.I162Sfs*8	ENST00000269305	NM_001126112.2	161	gcC/gc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55592144	55592144	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	553	595	0	ENST00000288135.5:c.1468G>C	p.Glu490Gln	p.E490Q	ENST00000288135	NM_000222.2	490	Gaa/Caa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66286224	66286224	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	547	574	0	ENST00000273854.3:c.1462T>A	p.Ser488Thr	p.S488T	ENST00000273854	NM_004439.5	488	Tct/Act					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35874567	35874567	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	453	577	0	ENST00000303115.3:c.723C>G	p.Ile241Met	p.I241M	ENST00000303115	NM_002185.3	241	atC/atG					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81335732	81335732	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	476	364	0	ENST00000222390.5:c.1628A>G	p.Asp543Gly	p.D543G	ENST00000222390	NM_000601.4	543	gAt/gGt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971012	21971012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	212	373	0	ENST00000304494.5:c.346G>T	p.Asp116Tyr	p.D116Y	ENST00000304494	NM_000077.4	116	Gac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971012	21971012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	212	373	0	ENST00000304494.5:c.346G>T	p.Asp116Tyr	p.D116Y	ENST00000304494	NM_000077.4	116	Gac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971012	21971012	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	212	373	0	ENST00000304494.5:c.346G>T	p.Asp116Tyr	p.D116Y	ENST00000304494	NM_000077.4	116	Gac/Tac					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	37006501	37006501	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	660	562	0	ENST00000358127.4:c.444C>A	p.Asn148Lys	p.N148K	ENST00000358127	NM_001280556.1	148	aaC/aaA					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119148972	119148972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	500	526	0	ENST00000264033.4:c.1192C>A	p.His398Asn	p.H398N	ENST00000264033	NM_005188.3	398	Cac/Aac					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48937076	48937076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	376	425	1	ENST00000267163.4:c.844G>T	p.Glu282Ter	p.E282*	ENST00000267163	NM_000321.2	282	Gaa/Taa					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36987037	36987037	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	288	324	0	ENST00000354822.5:c.652G>T	p.Ala218Ser	p.A218S	ENST00000354822	NM_001079668.2	218	Gcg/Tcg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88420224	88420224	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	169	583	1	ENST00000360948.2:c.2462A>T	p.Tyr821Phe	p.Y821F	ENST00000360948	NM_001012338.2	821	tAc/tTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578517	7578517	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	569	621	0	ENST00000269305.4:c.413C>T	p.Ala138Val	p.A138V	ENST00000269305	NM_001126112.2	138	gCc/gTc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29585423	29585423	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	516	562	0	ENST00000358273.4:c.4235G>A	p.Arg1412Lys	p.R1412K	ENST00000358273	NM_001042492.2	1412	aGa/aAa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591889	48591892	+	missense_variant	Missense_Mutation	ONP	ATGG	ATGG	TTTT			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	465	643	0	ENST00000342988.3:c.1052_1055delinsTTTT	p.Asp351_Gly352delinsValLeu	p.D351_G352delinsVL	ENST00000342988	NM_005359.5	351	gATGGa/gTTTTa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	272	673	1	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600335	10600335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	486	591	0	ENST00000171111.5:c.1520G>T	p.Arg507Leu	p.R507L	ENST00000171111	NM_203500.1	507	cGa/cTa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11100054	11100054	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	516	646	0	ENST00000344626.4:c.1180G>C	p.Gly394Arg	p.G394R	ENST00000344626	NM_003072.3	394	Ggg/Cgg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561124	9561124	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	349	420	0	ENST00000353224.5:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000353224	NM_177990.2	220	Cag/Tag					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55124922	55124922	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0006071-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	511	549	0	ENST00000257290.5:c.-12-2A>T		p.X4_splice	ENST00000257290	NM_006206.4	4						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0006805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	46	309	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	126	305	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	70	226	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	303	325	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	342	314	0	ENST00000288602.6:c.1790T>G	p.Leu597Arg	p.L597R	ENST00000288602	NM_004333.4	597	cTa/cGa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	466	412	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720650	89720650	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			22	185	69	0	ENST00000371953.3:c.802-1G>A		p.X268_splice	ENST00000371953	NM_000314.4	268						NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40979350	40979350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	170	249	0	ENST00000373198.4:c.1783G>A	p.Asp595Asn	p.D595N	ENST00000373198	NM_133170.3	595	Gac/Aac					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106523609	106523609	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	192	305	0	ENST00000359195.3:c.2760+1G>A		p.X920_splice	ENST00000359195	NM_002649.2	920						NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41420093	41420093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	135	224	0	ENST00000373198.4:c.228G>A	p.Met76Ile	p.M76I	ENST00000373198	NM_133170.3	76	atG/atA					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8075600	8075600	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145113484		P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	436	592	2	ENST00000377482.5:c.80G>A	p.Gly27Glu	p.G27E	ENST00000377482	NM_018948.3	27	gGg/gAg					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36932259	36932259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	302	702	0	ENST00000361632.4:c.2210C>T	p.Ser737Phe	p.S737F	ENST00000361632		737	tCc/tTc					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198269834	198269834	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	542	575	0	ENST00000335508.6:c.1505T>C	p.Leu502Ser	p.L502S	ENST00000335508	NM_012433.2	502	tTa/tCa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55131217	55131217	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	197	366	1	ENST00000257290.5:c.759+1G>A		p.X253_splice	ENST00000257290	NM_006206.4	253						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112102032	112102032	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	350	399	1	ENST00000257430.4:c.145A>G	p.Lys49Glu	p.K49E	ENST00000257430	NM_000038.5	49	Aaa/Gaa					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149499043	149499043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	195	384	0	ENST00000261799.4:c.2785G>A	p.Ala929Thr	p.A929T	ENST00000261799	NM_002609.3	929	Gcc/Acc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048626	180048626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	83	263	0	ENST00000261937.6:c.1936G>A	p.Glu646Lys	p.E646K	ENST00000261937	NM_182925.4	646	Gag/Aag					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2977620	2977620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	170	527	0	ENST00000396946.4:c.1064G>A	p.Gly355Glu	p.G355E	ENST00000396946	NM_032415.4	355	gGa/gAa					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106513165	106513165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	237	237	0	ENST00000359195.3:c.2069G>A	p.Arg690Lys	p.R690K	ENST00000359195	NM_002649.2	690	aGa/aAa					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128852177	128852177	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	252	538	0	ENST00000249373.3:c.2249C>T	p.Pro750Leu	p.P750L	ENST00000249373	NM_005631.4	750	cCc/cTc					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63850981	63850981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	439	387	1	ENST00000279873.7:c.1759G>A	p.Glu587Lys	p.E587K	ENST00000279873	NM_032199.2	587	Gaa/Aaa					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533467	533467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	143	297	0	ENST00000311189.7:c.436G>A	p.Ala146Thr	p.A146T	ENST00000311189		146	Gcc/Acc					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2156633	2156633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	126	522	1	ENST00000434045.2:c.289C>T	p.Leu97Phe	p.L97F	ENST00000434045	NM_001127598.1	97	Ctc/Ttc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112091	115112091	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	178	422	1	ENST00000257566.3:c.1649C>T	p.Ser550Phe	p.S550F	ENST00000257566	NM_016569.3	550	tCc/tTc					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26975714	26975714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	452	466	0	ENST00000381527.3:c.1222C>T	p.Pro408Ser	p.P408S	ENST00000381527	NM_001260.1	408	Cct/Tct					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858412	9858412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	301	411	1	ENST00000330684.3:c.2989G>A	p.Glu997Lys	p.E997K	ENST00000330684	NM_001134407.1	997	Gag/Aag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72832269	72832269	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	355	628	0	ENST00000268489.5:c.4312T>A	p.Phe1438Ile	p.F1438I	ENST00000268489	NM_006885.3	1438	Ttc/Atc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72984379	72984379	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	285	515	0	ENST00000268489.5:c.3205A>T	p.Lys1069Ter	p.K1069*	ENST00000268489	NM_006885.3	1069	Aag/Tag					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41243839	41243839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	249	368	0	ENST00000357654.3:c.3709A>T	p.Ile1237Leu	p.I1237L	ENST00000357654	NM_007294.3	1237	Ata/Tta					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78831639	78831639	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	159	362	0	ENST00000306801.3:c.1448C>T	p.Ser483Leu	p.S483L	ENST00000306801	NM_020761.2	483	tCg/tTg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546799	9546799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	147	311	0	ENST00000353224.5:c.1223C>T	p.Ser408Phe	p.S408F	ENST00000353224	NM_177990.2	408	tCc/tTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40743956	40743956	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	144	238	0	ENST00000373198.4:c.3040-1G>A		p.X1014_splice	ENST00000373198	NM_133170.3	1014						NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765275	66765275	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	189	422	0	ENST00000374690.3:c.287C>T	p.Ser96Phe	p.S96F	ENST00000374690	NM_000044.3	96	tCt/tTt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123199792	123199792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	355	446	0	ENST00000218089.9:c.2092C>T	p.His698Tyr	p.H698Y	ENST00000218089	NM_001042749.1	698	Cat/Tat					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43818270	43818271	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	301	557	1	ENST00000372470.3:c.1735_1736delinsTT	p.Pro579Phe	p.P579F	ENST00000372470	NM_005373.2	579	CCt/TTt					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133219108	133219109	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	147	455	0	ENST00000320574.5:c.4935_4936delinsAA	p.Ala1646Thr	p.A1646T	ENST00000320574	NM_006231.2	1645	caGGcc/caAAcc					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15375542	15375543	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	116	445	2	ENST00000263377.2:c.884_885delinsTT	p.Thr295Ile	p.T295I	ENST00000263377	NM_058243.2	295	aCC/aTT					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6426892	6426893	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0009349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	295	420	0	ENST00000356142.4:c.85_86delinsTT	p.Pro29Phe	p.P29F	ENST00000356142	NM_018890.3	29	CCt/TTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	85	455	2	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	82	583	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119642269	119642269	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	43	590	0	ENST00000316626.5:c.428C>G	p.Ala143Gly	p.A143G	ENST00000316626		143	gCc/gGc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061102	38061200	+	inframe_deletion	In_Frame_Del	DEL	TCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTC	TCCTTGCGGCTCTCAGGGCCGCCCTTGGCGCCGCTGCCCCCGCTTCCGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTC	-			P-0008048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	239	93	0	ENST00000250448.2:c.789_887del	p.Gln263_Asp296delinsHis	p.Q263_D296delinsH	ENST00000250448	NM_004496.3	263	caGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGAc/cac					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1278787	1278788	+	missense_variant	Missense_Mutation	DNP	TG	TG	AA			P-0008048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	44	492	0	ENST00000310581.5:c.2254_2255delinsTT	p.His752Phe	p.H752F	ENST00000310581	NM_198253.2	752	CAt/TTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0002883-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			734	321	520	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8500891	8500891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002883-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			780	247	492	0	ENST00000356435.5:c.1991G>A	p.Gly664Glu	p.G664E	ENST00000356435		664	gGa/gAa					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28608087	28608087	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002883-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1101	295	557	4	ENST00000241453.7:c.1879G>A	p.Ala627Thr	p.A627T	ENST00000241453	NM_004119.2	627	Gca/Aca					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131944897	131944897	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs1129482		P-0002883-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			805	57	381	0	ENST00000265335.6:c.2918A>T	p.Lys973Met	p.K973M	ENST00000265335		973	aAg/aTg					NEWRECORD																																																																									
HIST1H3F	0	MSKCC	GRCh37	6	26250689	26250689	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0002883-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1319	409	814	2	ENST00000446824.2:c.145C>T	p.Leu49Phe	p.L49F	ENST00000446824	NM_021018.2	49	Ctc/Ttc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42019523	42019523	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0002883-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1557	100	753	0	ENST00000219905.7:c.3576A>C	p.Glu1192Asp	p.E1192D	ENST00000219905	NM_001164273.1	1192	gaA/gaC					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72822742	72822742	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0002883-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	88	775	0	ENST00000268489.5:c.9433A>C	p.Thr3145Pro	p.T3145P	ENST00000268489	NM_006885.3	3145	Acg/Ccg					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50912781	50912781	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0002883-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	60	533	0	ENST00000440232.2:c.2012A>T	p.Lys671Met	p.K671M	ENST00000440232	NM_002691.3	671	aAg/aTg					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412884	49412884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	289	705	1	ENST00000418115.1:c.139G>A	p.Glu47Lys	p.E47K	ENST00000418115	NM_001664.2	47	Gag/Aag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0008328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	365	230	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0008328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	247	714	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48581157	48581157	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0008328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	129	305	0	ENST00000342988.3:c.461C>G	p.Ser154Ter	p.S154*	ENST00000342988	NM_005359.5	154	tCa/tGa					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47630441	47630441	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	133	434	0	ENST00000233146.2:c.111C>G	p.Phe37Leu	p.F37L	ENST00000233146	NM_000251.2	37	ttC/ttG					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048835	180048835	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	74	565	0	ENST00000261937.6:c.1727T>A	p.Leu576Gln	p.L576Q	ENST00000261937	NM_182925.4	576	cTg/cAg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139396305	139396305	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	88	580	0	ENST00000277541.6:c.5533C>T	p.Gln1845Ter	p.Q1845*	ENST00000277541	NM_017617.3	1845	Cag/Tag					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68845664	68845664	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	105	607	0	ENST00000261769.5:c.910A>G	p.Ile304Val	p.I304V	ENST00000261769	NM_004360.3	304	Atc/Gtc					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30264536	30264536	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	55	148	0	ENST00000322652.5:c.271G>A	p.Glu91Lys	p.E91K	ENST00000322652	NM_015355.2	91	Gag/Aag					NEWRECORD																																																																									
H3F3B	0	MSKCC	GRCh37	17	73775231	73775231	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	230	621	0	ENST00000254810.4:c.25C>A	p.Arg9Ser	p.R9S	ENST00000254810	NM_005324.3	9	Cgt/Agt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5214725	5214725	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	41	417	0	ENST00000357368.4:c.4341C>G	p.Ile1447Met	p.I1447M	ENST00000357368	NM_002850.3	1447	atC/atG					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63526104	63526104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	498	416	2	ENST00000307078.5:c.2522G>A	p.Arg841Gln	p.R841Q	ENST00000307078	NM_004655.3	841	cGg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175852	112175852	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	370	325	0	ENST00000257430.4:c.4561G>T	p.Glu1521Ter	p.E1521*	ENST00000257430	NM_000038.5	1521	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	554	491	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc					NEWRECORD																																																																									
NFKBIA	0	MSKCC	GRCh37	14	35871728	35871728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	371	607	1	ENST00000216797.5:c.778C>T	p.Arg260Cys	p.R260C	ENST00000216797	NM_020529.2	260	Cgc/Tgc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420289	49420289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	447	380	0	ENST00000301067.7:c.15460C>T	p.Arg5154Trp	p.R5154W	ENST00000301067	NM_003482.3	5154	Cgg/Tgg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120548014	120548014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	10	34	0	ENST00000256646.2:c.353G>T	p.Gly118Val	p.G118V	ENST00000256646	NM_024408.3	118	gGc/gTc					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99172194	99172194	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	479	388	2	ENST00000074304.5:c.1760A>G	p.Asp587Gly	p.D587G	ENST00000074304	NM_001134224.1	587	gAc/gGc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55564484	55564484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	207	306	0	ENST00000288135.5:c.372G>C	p.Leu124Phe	p.L124F	ENST00000288135	NM_000222.2	124	ttG/ttC					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55961104	55961104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	241	399	0	ENST00000263923.4:c.2836C>A	p.Arg946Ser	p.R946S	ENST00000263923	NM_002253.2	946	Cgt/Agt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55973974	55973974	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	171	333	0	ENST00000263923.4:c.1342T>A	p.Tyr448Asn	p.Y448N	ENST00000263923	NM_002253.2	448	Tat/Aat					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66213902	66213902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	149	483	0	ENST00000273854.3:c.2528G>A	p.Arg843Lys	p.R843K	ENST00000273854	NM_004439.5	843	aGa/aAa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187524462	187524462	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	223	304	1	ENST00000441802.2:c.11218G>T	p.Gly3740Ter	p.G3740*	ENST00000441802	NM_005245.3	3740	Gga/Tga					NEWRECORD																																																																									
HIST1H3E	0	MSKCC	GRCh37	6	26225431	26225431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	829	769	0	ENST00000360408.1:c.49C>A	p.Pro17Thr	p.P17T	ENST00000360408	NM_003532.2	17	Ccg/Acg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32170294	32170294	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	353	241	1	ENST00000375023.3:c.3314C>T	p.Ser1105Phe	p.S1105F	ENST00000375023	NM_004557.3	1105	tCc/tTc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2977584	2977584	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	285	397	1	ENST00000396946.4:c.1100C>A	p.Thr367Lys	p.T367K	ENST00000396946	NM_032415.4	367	aCg/aAg					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81374430	81374430	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	349	331	0	ENST00000222390.5:c.632G>C	p.Cys211Ser	p.C211S	ENST00000222390	NM_000601.4	211	tGc/tCc					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372212	55372212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	170	91	2	ENST00000297316.4:c.902G>T	p.Gly301Val	p.G301V	ENST00000297316	NM_022454.3	301	gGc/gTc					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	430254	430254	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	415	439	0	ENST00000399788.2:c.2448G>T	p.Arg816Ser	p.R816S	ENST00000399788	NM_001042603.1	816	agG/agT					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10249116	10249116	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	260	459	0	ENST00000340748.4:c.4066A>G	p.Arg1356Gly	p.R1356G	ENST00000340748		1356	Agg/Ggg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41573177	41573177	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	348	247	0	ENST00000263253.7:c.5462G>T	p.Arg1821Leu	p.R1821L	ENST00000263253	NM_001429.3	1821	cGa/cTa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47038895	47038895	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	45	69	0	ENST00000329236.7:c.670+1G>T		p.X224_splice	ENST00000329236	NM_001204466.1	224						NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48649587	48649587	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	668	572	1	ENST00000376670.3:c.71T>A	p.Val24Glu	p.V24E	ENST00000376670	NM_002049.3	24	gTg/gAg					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40468872	40468872	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	319	874	0	ENST00000264657.5:c.2192del	p.Leu731Ter	p.L731*	ENST00000264657	NM_139276.2	731	tTa/ta					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061192	38061192	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005802-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	156	287	0	ENST00000250448.2:c.797del	p.Phe266SerfsTer55	p.F266Sfs*55	ENST00000250448	NM_004496.3	266	tTc/tc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0007543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	140	221	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259433	89259433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	241	718	0	ENST00000336596.2:c.577G>A	p.Val193Met	p.V193M	ENST00000336596	NM_005233.5	193	Gtg/Atg					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41736934	41736934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	172	444	0	ENST00000301178.4:c.649C>T	p.Arg217Cys	p.R217C	ENST00000301178	NM_021913.4	217	Cgc/Tgc					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31016149	31016149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007543-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	240	734	0	ENST00000375687.4:c.395C>T	p.Ser132Leu	p.S132L	ENST00000375687	NM_015338.5	132	tCg/tTg					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098815	178098815	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	296	613	0	ENST00000397062.3:c.230A>G	p.Asp77Gly	p.D77G	ENST00000397062	NM_006164.4	77	gAt/gGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	111	358	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952138	178952138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	67	282	0	ENST00000263967.3:c.3193C>T	p.His1065Tyr	p.H1065Y	ENST00000263967	NM_006218.2	1065	Cat/Tat					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52662939	52662939	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	74	507	1	ENST00000394830.3:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000394830	NM_018313.4	472	Cga/Tga					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24129420	24129420	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	132	409	2	ENST00000263121.7:c.64G>A	p.Asp22Asn	p.D22N	ENST00000263121	NM_003073.3	22	Gac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578402	7578402	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	151	202	0	ENST00000269305.4:c.528C>A	p.Cys176Ter	p.C176*	ENST00000269305	NM_001126112.2	176	tgC/tgA					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2985451	2985451	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0006864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	67	234	0	ENST00000396946.4:c.358+2T>C		p.X120_splice	ENST00000396946	NM_032415.4	120						NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8073422	8073422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1462	394	610	1	ENST00000377482.5:c.1237G>A	p.Glu413Lys	p.E413K	ENST00000377482	NM_018948.3	413	Gaa/Aaa					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9777652	9777652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			896	52	347	0	ENST00000377346.4:c.988G>A	p.Gly330Ser	p.G330S	ENST00000377346	NM_005026.3	330	Ggc/Agc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11181324	11181324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			792	213	316	0	ENST00000361445.4:c.6912G>A	p.Trp2304Ter	p.W2304*	ENST00000361445	NM_004958.3	2304	tgG/tgA					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11182065	11182065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			734	255	284	0	ENST00000361445.4:c.6781C>T	p.Leu2261Phe	p.L2261F	ENST00000361445	NM_004958.3	2261	Ctc/Ttc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16254590	16254590	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	98	456	0	ENST00000375759.3:c.1855G>A	p.Glu619Lys	p.E619K	ENST00000375759	NM_015001.2	619	Gaa/Aaa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16263913	16263913	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			918	239	366	0	ENST00000375759.3:c.10282C>T	p.Pro3428Ser	p.P3428S	ENST00000375759	NM_015001.2	3428	Ccg/Tcg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100115	27100115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			845	278	328	0	ENST00000324856.7:c.3911C>T	p.Ala1304Val	p.A1304V	ENST00000324856	NM_006015.4	1304	gCc/gTc					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36932200	36932200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	324	463	0	ENST00000361632.4:c.2269G>A	p.Gly757Ser	p.G757S	ENST00000361632		757	Ggc/Agc					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46543281	46543281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			902	196	382	0	ENST00000262741.5:c.220G>A	p.Glu74Lys	p.E74K	ENST00000262741	NM_003629.3	74	Gag/Aag					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59247782	59247782	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	356	492	2	ENST00000371222.2:c.961C>T	p.Gln321Ter	p.Q321*	ENST00000371222	NM_002228.3	321	Caa/Taa					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65325897	65325897	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			784	230	248	1	ENST00000342505.4:c.1225G>A	p.Val409Ile	p.V409I	ENST00000342505	NM_002227.2	409	Gta/Ata					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			917	75	298	0	ENST00000369535.4:c.37G>A	p.Gly13Ser	p.G13S	ENST00000369535	NM_002524.4	13	Ggt/Agt					NEWRECORD																																																																									
VTCN1	0	MSKCC	GRCh37	1	117695712	117695712	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			846	207	437	1	ENST00000369458.3:c.724+1G>A		p.X242_splice	ENST00000369458	NM_024626.3	242						NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551831	150551831	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			199	66	83	0	ENST00000369026.2:c.176G>A	p.Gly59Glu	p.G59E	ENST00000369026	NM_021960.4	59	gGa/gAa					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162731226	162731226	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			880	66	274	0	ENST00000367921.3:c.1081G>A	p.Glu361Lys	p.E361K	ENST00000367921	NM_006182.2	361	Gag/Aag					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206658574	206658574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			966	75	294	0	ENST00000367120.3:c.1547C>T	p.Thr516Ile	p.T516I	ENST00000367120	NM_014002.3	516	aCc/aTc					NEWRECORD																																																																									
H3F3A	0	MSKCC	GRCh37	1	226253472	226253472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			547	40	175	0	ENST00000366813.1:c.244G>A	p.Asp82Asn	p.D82N	ENST00000366813		82	Gat/Aat					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241675293	241675293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			893	260	364	0	ENST00000366560.3:c.529C>T	p.Pro177Ser	p.P177S	ENST00000366560	NM_000143.3	177	Ccc/Tcc					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085638	16085638	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			829	73	266	0	ENST00000281043.3:c.814G>A	p.Asp272Asn	p.D272N	ENST00000281043	NM_005378.4	272	Gat/Aat					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25462035	25462035	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	85	341	0	ENST00000264709.3:c.2372C>T	p.Ala791Val	p.A791V	ENST00000264709	NM_175629.2	791	gCc/gTc					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25990512	25990512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			879	236	394	0	ENST00000435504.4:c.715G>A	p.Glu239Lys	p.E239K	ENST00000435504		239	Gaa/Aaa					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47707933	47707933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			853	247	349	0	ENST00000233146.2:c.2557G>A	p.Glu853Lys	p.E853K	ENST00000233146	NM_000251.2	853	Gag/Aag					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48033952	48033952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			713	61	279	0	ENST00000234420.5:c.4036G>A	p.Asp1346Asn	p.D1346N	ENST00000234420	NM_000179.2	1346	Gat/Aat					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61721145	61721145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			867	264	387	0	ENST00000401558.2:c.1129G>A	p.Ala377Thr	p.A377T	ENST00000401558	NM_003400.3	377	Gct/Act					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128051163	128051163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1068	66	337	1	ENST00000285398.2:c.160G>A	p.Asp54Asn	p.D54N	ENST00000285398	NM_000122.1	54	Gat/Aat					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212578314	212578314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			866	54	362	0	ENST00000342788.4:c.943G>A	p.Val315Ile	p.V315I	ENST00000342788	NM_005235.2	315	Gta/Ata					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220439632	220439632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			985	275	445	0	ENST00000243786.2:c.485C>T	p.Pro162Leu	p.P162L	ENST00000243786	NM_002191.3	162	cCc/cTc					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37067228	37067228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	90	354	0	ENST00000231790.2:c.1139C>T	p.Ala380Val	p.A380V	ENST00000231790	NM_000249.3	380	gCc/gTc					NEWRECORD																																																																									
MYD88	0	MSKCC	GRCh37	3	38180399	38180399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			755	202	292	0	ENST00000396334.3:c.247C>T	p.Pro83Ser	p.P83S	ENST00000396334	NM_002468.4	83	Ccc/Tcc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162103	47162103	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			886	63	280	0	ENST00000409792.3:c.4023G>A	p.Trp1341Ter	p.W1341*	ENST00000409792	NM_014159.6	1341	tgG/tgA					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162267	47162267	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	75	336	0	ENST00000409792.3:c.3859C>T	p.Gln1287Ter	p.Q1287*	ENST00000409792	NM_014159.6	1287	Cag/Tag					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72428228	72428228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	66	425	0	ENST00000477973.2:c.662G>A	p.Ala222Thr	p.A222T	ENST00000477973	NM_012234.5	222	Gct/Act					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187447268	187447268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			650	170	217	0	ENST00000232014.4:c.925G>A	p.Glu309Lys	p.E309K	ENST00000232014	NM_001130845.1	309	Gaa/Aaa					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187447321	187447321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			564	160	217	1	ENST00000232014.4:c.872C>T	p.Ala291Val	p.A291V	ENST00000232014	NM_001130845.1	291	gCc/gTc					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189456471	189456471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1157	62	427	0	ENST00000264731.3:c.232G>A	p.Asp78Asn	p.D78N	ENST00000264731	NM_003722.4	78	Gat/Aat					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55565892	55565892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1490	233	375	0	ENST00000288135.5:c.716C>T	p.Ser239Phe	p.S239F	ENST00000288135	NM_000222.2	239	tCt/tTt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55958882	55958882	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	179	262	0	ENST00000263923.4:c.2972-1G>A		p.X991_splice	ENST00000263923	NM_002253.2	991						NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66201797	66201797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1436	222	290	0	ENST00000273854.3:c.2705A>T	p.Asp902Val	p.D902V	ENST00000273854	NM_004439.5	902	gAt/gTt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467532	66467532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1640	303	335	0	ENST00000273854.3:c.737C>T	p.Thr246Ile	p.T246I	ENST00000273854	NM_004439.5	246	aCc/aTc					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106193739	106193739	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			444	122	161	0	ENST00000380013.4:c.4201G>A	p.Glu1401Lys	p.E1401K	ENST00000380013	NM_001127208.2	1401	Gaa/Aaa					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1264595	1264595	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	62	363	0	ENST00000310581.5:c.2767C>T	p.Pro923Ser	p.P923S	ENST00000310581	NM_198253.2	923	Ccg/Tcg					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294252	1294252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			487	32	181	1	ENST00000310581.5:c.749C>T	p.Pro250Leu	p.P250L	ENST00000310581	NM_198253.2	250	cCc/cTc					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38967523	38967523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			760	235	337	0	ENST00000357387.3:c.1067G>A	p.Gly356Glu	p.G356E	ENST00000357387	NM_152756.3	356	gGg/gAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178985	112178985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			828	51	289	0	ENST00000257430.4:c.7694G>A	p.Arg2565Lys	p.R2565K	ENST00000257430	NM_000038.5	2565	aGa/aAa					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131939102	131939102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			782	215	417	0	ENST00000265335.6:c.2318C>T	p.Thr773Ile	p.T773I	ENST00000265335		773	aCa/aTa					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149459662	149459662	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			774	248	330	0	ENST00000286301.3:c.545G>A	p.Gly182Asp	p.G182D	ENST00000286301	NM_005211.3	182	gGt/gAt					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176562768	176562768	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	84	382	0	ENST00000439151.2:c.664G>A	p.Val222Ile	p.V222I	ENST00000439151	NM_022455.4	222	Gtc/Atc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176721306	176721306	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			546	168	229	0	ENST00000439151.2:c.6937C>T	p.Gln2313Ter	p.Q2313*	ENST00000439151	NM_022455.4	2313	Cag/Tag					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163642	32163642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			548	42	158	0	ENST00000375023.3:c.5584C>T	p.Arg1862Trp	p.R1862W	ENST00000375023	NM_004557.3	1862	Cgg/Tgg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32178554	32178554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			802	109	306	0	ENST00000375023.3:c.2840C>T	p.Ala947Val	p.A947V	ENST00000375023	NM_004557.3	947	gCc/gTc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32184998	32184998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	66	324	1	ENST00000375023.3:c.1670G>A	p.Ser557Asn	p.S557N	ENST00000375023	NM_004557.3	557	aGc/aAc					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33288602	33288602	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			281	427	204	0	ENST00000374542.5:c.950T>C	p.Phe317Ser	p.F317S	ENST00000374542	NM_001141970.1	317	tTc/tCc					NEWRECORD																																																																									
PNRC1	0	MSKCC	GRCh37	6	89791095	89791095	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			100	12	28	0	ENST00000336032.3:c.482G>A	p.Ser161Asn	p.S161N	ENST00000336032	NM_006813.2	161	aGc/aAc					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	112017543	112017543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1258	361	477	0	ENST00000368678.4:c.970G>A	p.Val324Ile	p.V324I	ENST00000368678		324	Gtc/Atc					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138199930	138199930	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			500	68	167	0	ENST00000237289.4:c.1348C>T	p.Pro450Ser	p.P450S	ENST00000237289	NM_001270507.1	450	Cct/Tct					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005291	150005291	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	85	372	0	ENST00000253339.5:c.934C>T	p.Pro312Ser	p.P312S	ENST00000253339		312	Cct/Tct					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005641	150005641	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			700	189	290	0	ENST00000253339.5:c.584G>A	p.Gly195Glu	p.G195E	ENST00000253339		195	gGa/gAa					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150016329	150016329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			942	279	427	0	ENST00000253339.5:c.377C>T	p.Thr126Ile	p.T126I	ENST00000253339		126	aCt/aTt					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099892	157099892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			872	54	340	0	ENST00000346085.5:c.829C>T	p.Pro277Ser	p.P277S	ENST00000346085	NM_020732.3	277	Ccc/Tcc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157256607	157256607	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	63	385	0	ENST00000346085.5:c.1934C>T	p.Ser645Phe	p.S645F	ENST00000346085	NM_020732.3	645	tCt/tTt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55219020	55219020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1505	272	360	0	ENST00000275493.2:c.593G>A	p.Ser198Asn	p.S198N	ENST00000275493	NM_005228.3	198	aGc/aAc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55260472	55260472	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1741	292	424	0	ENST00000275493.2:c.2639G>A	p.Trp880Ter	p.W880*	ENST00000275493	NM_005228.3	880	tGg/tAg					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116411666	116411666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1395	261	377	0	ENST00000397752.3:c.2845C>T	p.Leu949Phe	p.L949F	ENST00000397752	NM_000245.2	949	Ctt/Ttt					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116435757	116435757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1572	224	321	0	ENST00000397752.3:c.3847C>T	p.Pro1283Ser	p.P1283S	ENST00000397752	NM_000245.2	1283	Cct/Tct					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151849987	151849987	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	234	308	1	ENST00000262189.6:c.12329C>T	p.Pro4110Leu	p.P4110L	ENST00000262189	NM_170606.2	4110	cCt/cTt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151851388	151851388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1584	98	359	0	ENST00000262189.6:c.12103C>T	p.Pro4035Ser	p.P4035S	ENST00000262189	NM_170606.2	4035	Ccc/Tcc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151851460	151851460	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1658	179	408	0	ENST00000262189.6:c.12031G>A	p.Val4011Ile	p.V4011I	ENST00000262189	NM_170606.2	4011	Gtt/Att					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38271525	38271525	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			907	77	373	0	ENST00000425967.3:c.2296G>A	p.Asp766Asn	p.D766N	ENST00000425967	NM_001174067.1	766	Gac/Aac					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371953	55371953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			287	99	108	0	ENST00000297316.4:c.643G>A	p.Asp215Asn	p.D215N	ENST00000297316	NM_022454.3	215	Gac/Aac					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117864306	117864306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	97	425	0	ENST00000297338.2:c.1351C>T	p.Leu451Phe	p.L451F	ENST00000297338	NM_006265.2	451	Ctc/Ttc					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117866494	117866494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1185	106	434	0	ENST00000297338.2:c.1151G>A	p.Arg384Lys	p.R384K	ENST00000297338	NM_006265.2	384	aGa/aAa					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5044467	5044467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1914	190	427	1	ENST00000381652.3:c.415G>A	p.Gly139Ser	p.G139S	ENST00000381652	NM_004972.3	139	Ggt/Agt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8486206	8486206	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			857	273	358	0	ENST00000356435.5:c.2611C>T	p.Leu871Phe	p.L871F	ENST00000356435		871	Ctt/Ttt					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80412545	80412545	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			794	206	324	0	ENST00000286548.4:c.496C>T	p.Arg166Cys	p.R166C	ENST00000286548	NM_002072.3	166	Cgc/Tgc					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93607731	93607731	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			674	213	281	0	ENST00000375746.1:c.433C>T	p.Gln145Ter	p.Q145*	ENST00000375746	NM_001174167.1	145	Cag/Tag					NEWRECORD																																																																									
PPP6C	0	MSKCC	GRCh37	9	127915850	127915850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1444	119	511	0	ENST00000373547.4:c.631G>A	p.Gly211Arg	p.G211R	ENST00000373547	NM_002721.4	211	Gga/Aga					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133729468	133729468	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			688	193	260	0	ENST00000318560.5:c.97G>A	p.Val33Ile	p.V33I	ENST00000318560	NM_005157.4	33	Gta/Ata					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760607	133760607	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			928	291	373	0	ENST00000318560.5:c.2930G>A	p.Ser977Asn	p.S977N	ENST00000318560	NM_005157.4	977	aGc/aAc					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135786050	135786050	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			753	227	272	0	ENST00000298552.3:c.1171C>T	p.Pro391Ser	p.P391S	ENST00000298552	NM_001162426.1	391	Cca/Tca					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391776	139391776	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			600	39	196	0	ENST00000277541.6:c.6415C>T	p.Leu2139Phe	p.L2139F	ENST00000277541	NM_017617.3	2139	Ctc/Ttc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139411838	139411838	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			728	227	285	0	ENST00000277541.6:c.1442-1G>A		p.X481_splice	ENST00000277541	NM_017617.3	481						NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139804421	139804421	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	266	440	1	ENST00000247668.2:c.578G>A	p.Gly193Asp	p.G193D	ENST00000247668	NM_021138.3	193	gGc/gAc					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63759891	63759891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	123	377	0	ENST00000279873.7:c.544C>T	p.Pro182Ser	p.P182S	ENST00000279873	NM_032199.2	182	Ccc/Tcc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405299	70405299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	65	335	0	ENST00000373644.4:c.2813G>A	p.Arg938Lys	p.R938K	ENST00000373644	NM_030625.2	938	aGa/aAa					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405848	70405848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	284	420	0	ENST00000373644.4:c.3362G>A	p.Gly1121Asp	p.G1121D	ENST00000373644	NM_030625.2	1121	gGc/gAc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70412263	70412263	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	69	405	0	ENST00000373644.4:c.4373G>A	p.Gly1458Asp	p.G1458D	ENST00000373644	NM_030625.2	1458	gGt/gAt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685281	89685281	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			267	321	247	0	ENST00000371953.3:c.176C>A	p.Ser59Ter	p.S59*	ENST00000371953	NM_000314.4	59	tCa/tAa					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123276956	123276956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			842	79	267	0	ENST00000358487.5:c.961G>A	p.Asp321Asn	p.D321N	ENST00000358487	NM_000141.4	321	Gac/Aac					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64572261	64572261	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			450	643	358	1	ENST00000337652.1:c.1393C>T	p.Arg465Ter	p.R465*	ENST00000337652	NM_130803.2	465	Cga/Tga					NEWRECORD																																																																									
EED	0	MSKCC	GRCh37	11	85968612	85968612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	71	404	0	ENST00000263360.6:c.608C>T	p.Pro203Leu	p.P203L	ENST00000263360	NM_003797.3	203	cCa/cTa					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102100531	102100531	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			955	293	341	0	ENST00000282441.5:c.1375G>A	p.Glu459Lys	p.E459K	ENST00000282441	NM_001130145.2	459	Gaa/Aaa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108201099	108201099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			702	188	281	2	ENST00000278616.4:c.7466C>T	p.Ser2489Phe	p.S2489F	ENST00000278616	NM_000051.3	2489	tCc/tTc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118343369	118343369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			825	79	297	0	ENST00000534358.1:c.1495C>T	p.Leu499Phe	p.L499F	ENST00000534358	NM_005933.3	499	Ctt/Ttt					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344620	118344620	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	326	474	1	ENST00000534358.1:c.2746G>A	p.Val916Ile	p.V916I	ENST00000534358	NM_005933.3	916	Gtt/Att					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118348826	118348826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	83	368	2	ENST00000534358.1:c.3479G>A	p.Gly1160Asp	p.G1160D	ENST00000534358	NM_005933.3	1160	gGc/gAc					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119170204	119170204	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			771	57	256	0	ENST00000264033.4:c.2435-1G>A		p.X812_splice	ENST00000264033	NM_005188.3	812						NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	475252	475252	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1359	219	381	0	ENST00000399788.2:c.385G>A	p.Gly129Ser	p.G129S	ENST00000399788	NM_001042603.1	129	Ggt/Agt					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	493269	493269	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1734	290	462	2	ENST00000399788.2:c.294G>A	p.Trp98Ter	p.W98*	ENST00000399788	NM_001042603.1	98	tgG/tgA					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18446891	18446891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1381	204	434	0	ENST00000266497.5:c.976C>T	p.Gln326Ter	p.Q326*	ENST00000266497		326	Cag/Tag					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18715756	18715756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1494	230	376	0	ENST00000266497.5:c.3587C>T	p.Ser1196Phe	p.S1196F	ENST00000266497		1196	tCc/tTc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380271	25380271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1716	250	400	0	ENST00000256078.4:c.187G>A	p.Glu63Lys	p.E63K	ENST00000256078	NM_033360.2	63	Gag/Aag					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246458	46246458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1675	233	422	1	ENST00000334344.6:c.4552C>T	p.Pro1518Ser	p.P1518S	ENST00000334344	NM_152641.2	1518	Cca/Tca					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46254671	46254671	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1983	117	433	0	ENST00000334344.6:c.4861C>T	p.Pro1621Ser	p.P1621S	ENST00000334344	NM_152641.2	1621	Cct/Tct					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46298802	46298802	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1504	238	384	1	ENST00000334344.6:c.5449G>A	p.Glu1817Lys	p.E1817K	ENST00000334344	NM_152641.2	1817	Gaa/Aaa					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121435468	121435468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1423	87	311	1	ENST00000257555.6:c.1501G>A	p.Ala501Thr	p.A501T	ENST00000257555		501	Gcc/Acc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133237629	133237629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1577	94	400	0	ENST00000320574.5:c.2986G>A	p.Gly996Ser	p.G996S	ENST00000320574	NM_006231.2	996	Ggc/Agc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133245240	133245240	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1271	147	292	2	ENST00000320574.5:c.2007G>A	p.Trp669Ter	p.W669*	ENST00000320574	NM_006231.2	669	tgG/tgA					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21563318	21563318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	227	359	0	ENST00000382592.4:c.601C>T	p.Pro201Ser	p.P201S	ENST00000382592	NM_014572.2	201	Ccc/Tcc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913575	32913575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1983	205	518	2	ENST00000380152.3:c.5083G>A	p.Glu1695Lys	p.E1695K	ENST00000380152		1695	Gaa/Aaa					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134768	41134768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1952	339	479	0	ENST00000379561.5:c.860G>A	p.Ser287Asn	p.S287N	ENST00000379561	NM_002015.3	287	aGc/aAc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435114	110435114	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			877	47	195	0	ENST00000375856.3:c.3287C>T	p.Ala1096Val	p.A1096V	ENST00000375856	NM_003749.2	1096	gCc/gTc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435772	110435772	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			226	47	46	0	ENST00000375856.3:c.2629C>T	p.Pro877Ser	p.P877S	ENST00000375856	NM_003749.2	877	Ccg/Tcg					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36987226	36987226	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			606	92	135	0	ENST00000354822.5:c.464-1G>A		p.X155_splice	ENST00000354822	NM_001079668.2	155						NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061147	38061147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			334	20	66	0	ENST00000250448.2:c.842G>A	p.Gly281Glu	p.G281E	ENST00000250448	NM_004496.3	281	gGa/gAa					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042196	42042196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	350	543	0	ENST00000219905.7:c.6391C>T	p.Pro2131Ser	p.P2131S	ENST00000219905	NM_001164273.1	2131	Cca/Tca					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67358542	67358542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			845	47	272	0	ENST00000327367.4:c.50G>A	p.Gly17Asp	p.G17D	ENST00000327367	NM_005902.3	17	gGc/gAc					NEWRECORD																																																																									
CD276	0	MSKCC	GRCh37	15	73996200	73996200	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			506	154	200	0	ENST00000318443.5:c.934G>A	p.Ala312Thr	p.A312T	ENST00000318443	NM_001024736.1	312	Gcc/Acc					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91334051	91334051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			872	46	290	0	ENST00000355112.3:c.2996C>T	p.Thr999Ile	p.T999I	ENST00000355112	NM_000057.2	999	aCc/aTc					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99434697	99434697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			733	255	315	0	ENST00000268035.6:c.784C>T	p.Pro262Ser	p.P262S	ENST00000268035	NM_000875.3	262	Cct/Tct					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99467859	99467859	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	73	358	0	ENST00000268035.6:c.2728C>T	p.Leu910Phe	p.L910F	ENST00000268035	NM_000875.3	910	Ctc/Ttc					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	339439	339439	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			806	114	344	0	ENST00000262320.3:c.2462+1G>A		p.X821_splice	ENST00000262320	NM_003502.3	821						NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2106696	2106696	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			487	717	377	2	ENST00000219476.3:c.700G>T	p.Glu234Ter	p.E234*	ENST00000219476	NM_000548.3	234	Gag/Tag					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2226342	2226342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			952	79	320	0	ENST00000326181.6:c.1955C>T	p.Ser652Phe	p.S652F	ENST00000326181	NM_032271.2	652	tCc/tTc					NEWRECORD																																																																									
PDPK1	0	MSKCC	GRCh37	16	2647222	2647222	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	131	393	1	ENST00000342085.4:c.1500G>A	p.Trp500Ter	p.W500*	ENST00000342085	NM_002613.4	500	tgG/tgA					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779058	3779058	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			647	43	209	0	ENST00000262367.5:c.5990C>T	p.Pro1997Leu	p.P1997L	ENST00000262367	NM_004380.2	1997	cCc/cTc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779196	3779196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			400	94	151	0	ENST00000262367.5:c.5852C>T	p.Pro1951Leu	p.P1951L	ENST00000262367	NM_004380.2	1951	cCc/cTc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10274027	10274027	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			978	54	382	0	ENST00000330684.3:c.242G>A	p.Ser81Asn	p.S81N	ENST00000330684	NM_001134407.1	81	aGc/aAc					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67660553	67660553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	91	445	2	ENST00000264010.4:c.1453C>T	p.His485Tyr	p.H485Y	ENST00000264010	NM_006565.3	485	Cat/Tat					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72821152	72821152	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1288	81	445	0	ENST00000268489.5:c.11023C>T	p.Pro3675Ser	p.P3675S	ENST00000268489	NM_006885.3	3675	Ccg/Tcg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72822541	72822541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	70	380	0	ENST00000268489.5:c.9634C>T	p.Pro3212Ser	p.P3212S	ENST00000268489	NM_006885.3	3212	Ccg/Tcg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992732	72992732	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200794923		P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	311	461	1	ENST00000268489.5:c.1313C>T	p.Ala438Val	p.A438V	ENST00000268489	NM_006885.3	438	gCg/gTg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89348158	89348158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1460	93	536	0	ENST00000301030.4:c.4792C>T	p.His1598Tyr	p.H1598Y	ENST00000301030	NM_001256183.1	1598	Cac/Tac					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89371683	89371683	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	99	367	2	ENST00000301030.4:c.157G>A	p.Glu53Lys	p.E53K	ENST00000301030	NM_001256183.1	53	Gag/Aag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			716	26	212	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15974943	15974943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1562	252	406	0	ENST00000268712.3:c.3932G>A	p.Gly1311Asp	p.G1311D	ENST00000268712	NM_006311.3	1311	gGc/gAc					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37649105	37649105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1451	253	310	1	ENST00000447079.4:c.2210C>T	p.Thr737Ile	p.T737I	ENST00000447079	NM_015083.1	737	aCc/aTc					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37686947	37686947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1563	101	354	1	ENST00000447079.4:c.3851G>A	p.Gly1284Asp	p.G1284D	ENST00000447079	NM_015083.1	1284	gGc/gAc					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868262	37868262	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	224	329	0	ENST00000269571.5:c.983C>T	p.Thr328Ile	p.T328I	ENST00000269571		328	aCa/aTa					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37882913	37882913	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs112493843		P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1271	210	341	1	ENST00000269571.5:c.2970+1G>A		p.X990_splice	ENST00000269571		990						NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37883770	37883770	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1618	284	399	0	ENST00000269571.5:c.3382G>A	p.Val1128Ile	p.V1128I	ENST00000269571		1128	Gtt/Att					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40354430	40354430	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			2042	382	533	0	ENST00000293328.3:c.2165G>A	p.Ser722Asn	p.S722N	ENST00000293328	NM_012448.3	722	aGc/aAc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47688819	47688819	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1315	91	239	0	ENST00000347630.2:c.481G>A	p.Val161Met	p.V161M	ENST00000347630	NM_001007230.1	161	Gtg/Atg					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63533467	63533467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	203	264	0	ENST00000307078.5:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000307078	NM_004655.3	563	Gaa/Aaa					NEWRECORD																																																																									
SRSF2	0	MSKCC	GRCh37	17	74733208	74733208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1542	88	370	0	ENST00000359995.5:c.35G>A	p.Gly12Asp	p.G12D	ENST00000359995	NM_001195427.1	12	gGt/gAt					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39575854	39575854	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			619	197	256	0	ENST00000262039.4:c.787G>A	p.Glu263Lys	p.E263K	ENST00000262039	NM_002647.2	263	Gag/Aag					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2211782	2211782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	104	417	0	ENST00000398665.3:c.1498G>A	p.Ala500Thr	p.A500T	ENST00000398665	NM_032482.2	500	Gca/Aca					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10248549	10248549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			848	266	339	1	ENST00000340748.4:c.4204G>A	p.Gly1402Ser	p.G1402S	ENST00000340748		1402	Ggc/Agc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15290896	15290896	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1828	278	457	1	ENST00000263388.2:c.3314G>A	p.Gly1105Asp	p.G1105D	ENST00000263388	NM_000435.2	1105	gGc/gAc					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15375214	15375214	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			868	158	168	0	ENST00000263377.2:c.1212+1G>A		p.X404_splice	ENST00000263377	NM_058243.2	404						NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17942055	17942055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	206	325	1	ENST00000458235.1:c.2960G>A	p.Gly987Asp	p.G987D	ENST00000458235	NM_000215.3	987	gGc/gAc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17952226	17952226	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	179	230	0	ENST00000458235.1:c.1114G>A	p.Val372Met	p.V372M	ENST00000458235	NM_000215.3	372	Gtg/Atg					NEWRECORD																																																																									
MEF2B	0	MSKCC	GRCh37	19	19257615	19257615	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139889780		P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1406	234	320	0	ENST00000162023.5:c.611C>T	p.Thr204Met	p.T204M	ENST00000162023		204	aCg/aTg					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36030049	36030049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1516	109	312	0	ENST00000358208.4:c.1084C>T	p.Arg362Trp	p.R362W	ENST00000358208		362	Cgg/Tgg					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57485137	57485137	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1185	91	251	0	ENST00000371085.3:c.970+1G>A		p.X324_splice	ENST00000371085	NM_000516.4	324						NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41489045	41489045	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			865	271	322	0	ENST00000263253.7:c.37G>A	p.Ala13Thr	p.A13T	ENST00000263253	NM_001429.3	13	Gcc/Acc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41536175	41536175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			902	236	356	0	ENST00000263253.7:c.1792G>A	p.Ala598Thr	p.A598T	ENST00000263253	NM_001429.3	598	Gct/Act					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41574035	41574035	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			543	172	251	1	ENST00000263253.7:c.6320C>T	p.Pro2107Leu	p.P2107L	ENST00000263253	NM_001429.3	2107	cCc/cTc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44929053	44929053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1305	207	512	0	ENST00000377967.4:c.2153G>A	p.Ser718Asn	p.S718N	ENST00000377967	NM_021140.2	718	aGc/aAc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044898	47044898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			834	204	305	1	ENST00000329236.7:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000329236	NM_001204466.1	664	Cag/Tag					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410019	63410019	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			909	238	381	0	ENST00000330258.3:c.3148G>A	p.Asp1050Asn	p.D1050N	ENST00000330258	NM_152424.3	1050	Gat/Aat					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70356132	70356132	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1343	92	433	0	ENST00000374080.3:c.5027G>A	p.Gly1676Asp	p.G1676D	ENST00000374080		1676	gGt/gAt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70357681	70357681	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1389	89	454	0	ENST00000374080.3:c.5932C>T	p.Pro1978Ser	p.P1978S	ENST00000374080		1978	Cct/Tct					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76940464	76940464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1380	94	533	1	ENST00000373344.5:c.629G>A	p.Ser210Asn	p.S210N	ENST00000373344	NM_000489.3	210	aGc/aAc					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551492	150551494	+	inframe_deletion	In_Frame_Del	DEL	TCC	TCC	-			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			509	591	416	7	ENST00000369026.2:c.513_515delGGA	p.Glu171del	p.E171del	ENST00000369026	NM_021960.4	171	gaGGAc/gac					NEWRECORD																																																																									
IFNGR1	3459	MSKCC	GRCh37	6	137519505	137519506	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-	rs780346130		P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			767	233	327	1	ENST00000367739.4:c.1132_1133del	p.Ser378PhefsTer6	p.S378Ffs*6	ENST00000367739	NM_000416.2	378	AGt/t					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870952	12870975	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	GGAATTTCGATTTTCAGAATCACA	GGAATTTCGATTTTCAGAATCACA	-			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			929	435	274	0	ENST00000228872.4:c.179_202del	p.Trp60_Lys68delinsTer	p.W60_K68delins*	ENST00000228872	NM_004064.3	60	tGGAATTTCGATTTTCAGAATCACAaa/taa					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3823845	3823863	+	frameshift_variant	Frame_Shift_Del	DEL	CTGAGCGGGCGCCTGGGCC	CTGAGCGGGCGCCTGGGCC	-			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			405	590	294	1	ENST00000262367.5:c.2352_2370del	p.Met784IlefsTer17	p.M784Ifs*17	ENST00000262367	NM_004380.2	784	atGGCCCAGGCGCCCGCTCAG/at					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007076-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			441	31	143	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	59	248	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	513	384	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120459277	120459277	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	47	240	0	ENST00000256646.2:c.6068A>G	p.Tyr2023Cys	p.Y2023C	ENST00000256646	NM_024408.3	2023	tAt/tGt					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11984739	11984739	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	59	232	0	ENST00000353533.5:c.285G>A	p.Trp95Ter	p.W95*	ENST00000353533	NM_003010.3	95	tgG/tgA					NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40453380	40453380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1286	256	1049	3	ENST00000345506.4:c.1077G>T	p.Lys359Asn	p.K359N	ENST00000345506	NM_003152.3	359	aaG/aaT					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39755515	39755515	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008334-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	143	531	0	ENST00000288319.7:c.1250A>T	p.Tyr417Phe	p.Y417F	ENST00000288319	NM_182918.3	417	tAc/tTc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0006964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	543	588	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579386	7579386	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	283	678	0	ENST00000269305.4:c.301A>T	p.Lys101Ter	p.K101*	ENST00000269305	NM_001126112.2	101	Aaa/Taa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0006279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	15	375	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	14	396	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006858-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	25	191	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0005174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	70	305	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36206706	36206706	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0005174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	52	199	0	ENST00000300305.3:c.805+1G>A		p.X269_splice	ENST00000300305		269						NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916918	178916920	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-			P-0005174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	233	842	1	ENST00000263967.3:c.305_307del	p.Ile102_Glu103delinsLys	p.I102_E103delinsK	ENST00000263967	NM_006218.2	102	aTTGaa/aaa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	97	454	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0008664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	200	609	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162743361	162743361	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	107	418	1	ENST00000367921.3:c.1831C>T	p.Arg611Ter	p.R611*	ENST00000367921	NM_006182.2	611	Cga/Tga					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30672191	30672191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	155	727	0	ENST00000376406.3:c.4769C>T	p.Pro1590Leu	p.P1590L	ENST00000376406	NM_014641.2	1590	cCt/cTt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039634	47039655	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGCAGGCCCTGCACCCACCA	CCTGCAGGCCCTGCACCCACCA	-			P-0008664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	106	497	0	ENST00000329236.7:c.853_874del	p.Leu285SerfsTer115	p.L285Sfs*115	ENST00000329236	NM_001204466.1	284	atCCTGCAGGCCCTGCACCCACCA/at					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0009063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	38	330	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	35	519	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56438296	56438296	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	92	283	0	ENST00000407977.2:c.697C>T	p.Gln233Ter	p.Q233*	ENST00000407977		233	Cag/Tag					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	223	475	0	ENST00000288135.5:c.1676T>A	p.Val559Asp	p.V559D	ENST00000288135	NM_000222.2	559	gTt/gAt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42054435	42054435	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	310	500	0	ENST00000219905.7:c.7619del	p.Ile2540AsnfsTer17	p.I2540Nfs*17	ENST00000219905	NM_001164273.1	2540	aTa/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578419	7578419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	468	346	1	ENST00000269305.4:c.511G>T	p.Glu171Ter	p.E171*	ENST00000269305	NM_001126112.2	171	Gag/Tag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175536	112175536	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	358	446	0	ENST00000257430.4:c.4245del	p.Ser1415ArgfsTer4	p.S1415Rfs*4	ENST00000257430	NM_000038.5	1415	agT/ag					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46714199	46714199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	105	484	1	ENST00000371975.4:c.19C>T	p.Pro7Ser	p.P7S	ENST00000371975	NM_003579.3	7	Ccc/Tcc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52668619	52668619	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	415	604	1	ENST00000394830.3:c.1300C>T	p.Arg434Ter	p.R434*	ENST00000394830	NM_018313.4	434	Cga/Tga					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30671882	30671882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	192	642	0	ENST00000376406.3:c.5078C>T	p.Pro1693Leu	p.P1693L	ENST00000376406	NM_014641.2	1693	cCg/cTg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117622269	117622269	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	110	572	0	ENST00000368508.3:c.6601G>T	p.Glu2201Ter	p.E2201*	ENST00000368508	NM_002944.2	2201	Gaa/Taa					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36012561	36012561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1452	149	498	0	ENST00000358208.4:c.5G>A	p.Gly2Asp	p.G2D	ENST00000358208		2	gGt/gAt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	441	334	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0008932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	1224	877	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412337	139412339	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0008932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	505	426	0	ENST00000277541.6:c.1306_1308del	p.Phe436del	p.F436del	ENST00000277541	NM_017617.3	436	TTC/-					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29543683	29543683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	210	523	0	ENST00000389048.3:c.1480C>G	p.Leu494Val	p.L494V	ENST00000389048	NM_004304.4	494	Ctg/Gtg					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15350274	15350274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1310	91	555	1	ENST00000263377.2:c.3505G>A	p.Ala1169Thr	p.A1169T	ENST00000263377	NM_058243.2	1169	Gca/Aca					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187629770	187629772	+	frameshift_variant	Frame_Shift_Del	DEL	ACT	ACT	CC			P-0008932-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	446	606	0	ENST00000441802.2:c.1210_1212delinsGG	p.Ser404GlyfsTer10	p.S404Gfs*10	ENST00000441802	NM_005245.3	404	AGT/GG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	350	528	1	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11272421	11272421	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	123	356	0	ENST00000361445.4:c.3509G>C	p.Arg1170Pro	p.R1170P	ENST00000361445	NM_004958.3	1170	cGc/cCc					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098846	178098846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	151	510	0	ENST00000397062.3:c.199G>A	p.Glu67Lys	p.E67K	ENST00000397062	NM_006164.4	67	Gag/Aag					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056024	26056024	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	145	193	0	ENST00000343677.2:c.633G>C	p.Lys211Asn	p.K211N	ENST00000343677	NM_005319.3	211	aaG/aaC					NEWRECORD																																																																									
HIST1H3F	0	MSKCC	GRCh37	6	26250737	26250737	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	646	826	0	ENST00000446824.2:c.97A>G	p.Thr33Ala	p.T33A	ENST00000446824	NM_021018.2	33	Acc/Gcc					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120231	94120231	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	254	496	0	ENST00000369303.4:c.820G>T	p.Asp274Tyr	p.D274Y	ENST00000369303	NM_004440.3	274	Gac/Tac					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	149997697	149997697	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs145871963		P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	75	323	0	ENST00000253339.5:c.2770C>T	p.Arg924Ter	p.R924*	ENST00000253339		924	Cga/Tga					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2962921	2962921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	335	355	0	ENST00000396946.4:c.1987G>T	p.Gly663Trp	p.G663W	ENST00000396946	NM_032415.4	663	Ggg/Tgg					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729560	41729560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	406	667	4	ENST00000242208.4:c.969G>T	p.Lys323Asn	p.K323N	ENST00000242208	NM_002192.2	323	aaG/aaT					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81350077	81350077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	215	384	0	ENST00000222390.5:c.1255A>T	p.Met419Leu	p.M419L	ENST00000222390	NM_000601.4	419	Atg/Ttg					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116380138	116380138	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	158	488	2	ENST00000397752.3:c.1527G>T	p.Lys509Asn	p.K509N	ENST00000397752	NM_000245.2	509	aaG/aaT					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412237	139412237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	207	424	0	ENST00000277541.6:c.1408C>G	p.Gln470Glu	p.Q470E	ENST00000277541	NM_017617.3	470	Cag/Gag					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18648994	18648994	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	147	261	0	ENST00000266497.5:c.2671-2A>T		p.X891_splice	ENST00000266497		891						NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061257	38061257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	429	423	0	ENST00000250448.2:c.732G>C	p.Trp244Cys	p.W244C	ENST00000250448	NM_004496.3	244	tgG/tgC					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030403	49030403	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			21	192	287	0	ENST00000267163.4:c.1880del	p.Asn627MetfsTer16	p.N627Mfs*16	ENST00000267163	NM_000321.2	626	gcA/gc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916725	178916725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	149	511	0	ENST00000263967.3:c.112C>T	p.Arg38Cys	p.R38C	ENST00000263967	NM_006218.2	38	Cgt/Tgt					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0004781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	50	307	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175593	112175611	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAAGTAAAACACCTCCA	CAGAAGTAAAACACCTCCA	-			P-0004781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	106	418	0	ENST00000257430.4:c.4303_4321del	p.Arg1435HisfsTer32	p.R1435Hfs*32	ENST00000257430	NM_000038.5	1434	agCAGAAGTAAAACACCTCCA/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579483	7579484	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0004781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	115	276	0	ENST00000269305.4:c.203_204del	p.Glu68GlyfsTer80	p.E68Gfs*80	ENST00000269305	NM_001126112.2	68	gAG/g					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0009206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	23	438	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106555150	106555150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	34	303	0	ENST00000369096.4:c.2267A>G	p.Glu756Gly	p.E756G	ENST00000369096	NM_001198.3	756	gAg/gGg					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81334713	81334713	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	30	669	3	ENST00000222390.5:c.2003C>T	p.Pro668Leu	p.P668L	ENST00000222390	NM_000601.4	668	cCa/cTa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	147	322	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	74	273	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	90	212	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72076758	72076758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	159	540	0	ENST00000357731.5:c.739G>A	p.Gly247Ser	p.G247S	ENST00000357731	NM_173808.2	247	Ggt/Agt					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193218998	193218998	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	129	264	0	ENST00000367435.3:c.1556A>T	p.Asp519Val	p.D519V	ENST00000367435	NM_024529.4	519	gAc/gTc					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243800963	243800963	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	189	430	1	ENST00000263826.5:c.511G>T	p.Gly171Ter	p.G171*	ENST00000263826	NM_005465.4	171	Gga/Tga					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89176380	89176380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	55	312	0	ENST00000336596.2:c.110C>T	p.Thr37Ile	p.T37I	ENST00000336596	NM_005233.5	37	aCa/aTa					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81339554	81339554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	135	402	0	ENST00000222390.5:c.1450G>T	p.Val484Leu	p.V484L	ENST00000222390	NM_000601.4	484	Gta/Tta					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98242310	98242310	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	67	313	0	ENST00000331920.6:c.1008C>A	p.His336Gln	p.H336Q	ENST00000331920	NM_000264.3	336	caC/caA					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64132861	64132861	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	327	438	1	ENST00000334205.4:c.995C>T	p.Ala332Val	p.A332V	ENST00000334205	NM_003942.2	332	gCg/gTg					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64137809	64137809	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	284	437	0	ENST00000334205.4:c.1910G>T	p.Gly637Val	p.G637V	ENST00000334205	NM_003942.2	637	gGg/gTg					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69457998	69457998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	224	258	0	ENST00000227507.2:c.398G>T	p.Arg133Leu	p.R133L	ENST00000227507	NM_053056.2	133	cGg/cTg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29657373	29657373	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1229	144	368	0	ENST00000358273.4:c.5669G>T	p.Gly1890Val	p.G1890V	ENST00000358273	NM_001042492.2	1890	gGc/gTc					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1619428	1619428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	93	382	0	ENST00000344749.5:c.1213C>T	p.Arg405Cys	p.R405C	ENST00000344749	NM_001136139.2	405	Cgc/Tgc					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007800	45007801	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	70	261	0	ENST00000558401.1:c.248_249del	p.Tyr83SerfsTer6	p.Y83Sfs*6	ENST00000558401	NM_004048.2	83	TAt/t					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90993615	90993615	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007487-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	51	268	0	ENST00000265433.3:c.308G>T	p.Gly103Val	p.G103V	ENST00000265433	NM_002485.4	103	gGa/gTa					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38958555	38958555	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	46	380	0	ENST00000357387.3:c.2410C>G	p.Leu804Val	p.L804V	ENST00000357387	NM_152756.3	804	Ctc/Gtc					NEWRECORD																																																																									
RAB35	0	MSKCC	GRCh37	12	120536918	120536918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	142	586	1	ENST00000229340.5:c.268G>A	p.Val90Ile	p.V90I	ENST00000229340	NM_006861.6	90	Gtc/Atc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191583	10191584	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0006597-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	99	463	0	ENST00000256474.2:c.577_578del	p.Asn193CysfsTer62	p.N193Cfs*62	ENST00000256474	NM_000551.3	192	ccAAat/ccat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	230	353	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0008913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	703	529	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048812	180048812	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	195	436	0	ENST00000261937.6:c.1750A>G	p.Lys584Glu	p.K584E	ENST00000261937	NM_182925.4	584	Aag/Gag					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138200338	138200338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	59	210	0	ENST00000237289.4:c.1756G>A	p.Ala586Thr	p.A586T	ENST00000237289	NM_001270507.1	586	Gcc/Acc					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59876601	59876601	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	73	317	1	ENST00000259008.2:c.1200C>A	p.Asp400Glu	p.D400E	ENST00000259008	NM_032043.2	400	gaC/gaA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	103	233	0	ENST00000269305.4:c.527G>A	p.Cys176Tyr	p.C176Y	ENST00000269305	NM_001126112.2	176	tGc/tAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174112	112174112	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	130	340	0	ENST00000257430.4:c.2821G>T	p.Glu941Ter	p.E941*	ENST00000257430	NM_000038.5	941	Gaa/Taa					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56770023	56770023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	40	315	1	ENST00000337432.4:c.19C>T	p.Arg7Cys	p.R7C	ENST00000337432	NM_058216.2	7	Cgc/Tgc					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47422655	47422655	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	111	279	1	ENST00000377045.4:c.127G>A	p.Asp43Asn	p.D43N	ENST00000377045	NM_001654.4	43	Gac/Aac					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458018	120458018	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	58	248	0	ENST00000256646.2:c.7327C>A	p.Pro2443Thr	p.P2443T	ENST00000256646	NM_024408.3	2443	Cct/Act					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102206697	102206697	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1047	95	414	0	ENST00000263464.3:c.1325A>T	p.Asn442Ile	p.N442I	ENST00000263464	NM_001165.4	442	aAt/aTt					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95566230	95566230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008042-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	108	323	0	ENST00000343455.3:c.4093C>G	p.Leu1365Val	p.L1365V	ENST00000343455	NM_177438.2	1365	Cta/Gta					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0004856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	107	381	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0004856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	140	370	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577507	7577507	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	140	380	1	ENST00000269305.4:c.774A>T	p.Glu258Asp	p.E258D	ENST00000269305	NM_001126112.2	258	gaA/gaT					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553588	106553588	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	84	303	0	ENST00000369096.4:c.1553C>T	p.Thr518Met	p.T518M	ENST00000369096	NM_001198.3	518	aCg/aTg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974778	21974786	+	inframe_deletion	In_Frame_Del	DEL	CCAGCCAGT	CCAGCCAGT	-			P-0004856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	51	175	0	ENST00000304494.5:c.41_49del	p.Asp14_Leu16del	p.D14_L16del	ENST00000304494	NM_000077.4	14	gACTGGCTGGcc/gcc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974778	21974786	+	inframe_deletion	In_Frame_Del	DEL	CCAGCCAGT	CCAGCCAGT	-			P-0004856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	51	175	0	ENST00000304494.5:c.41_49del	p.Asp14_Leu16del	p.D14_L16del	ENST00000304494	NM_000077.4	14	gACTGGCTGGcc/gcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	307	398	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339505	116339505	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	119	257	0	ENST00000397752.3:c.367G>A	p.Asp123Asn	p.D123N	ENST00000397752	NM_000245.2	123	Gac/Aac					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3778625	3778625	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	137	244	4	ENST00000262367.5:c.6423C>A	p.Asn2141Lys	p.N2141K	ENST00000262367	NM_004380.2	2141	aaC/aaA					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618592	37618592	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0009044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	297	310	0	ENST00000447079.4:c.268A>T	p.Lys90Ter	p.K90*	ENST00000447079	NM_015083.1	90	Aaa/Taa					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618868	37618868	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	450	426	0	ENST00000447079.4:c.544G>T	p.Glu182Ter	p.E182*	ENST00000447079	NM_015083.1	182	Gag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174096	112174096	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	88	529	0	ENST00000257430.4:c.2805C>A	p.Tyr935Ter	p.Y935*	ENST00000257430	NM_000038.5	935	taC/taA					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	103	459	1	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0009716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	211	515	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67479810	67479810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	138	608	1	ENST00000327367.4:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000327367	NM_005902.3	373	Cgc/Tgc					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90965804	90965804	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	136	568	0	ENST00000265433.3:c.1513G>T	p.Glu505Ter	p.E505*	ENST00000265433	NM_002485.4	505	Gag/Tag					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37676268	37676268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	209	750	0	ENST00000447079.4:c.3023G>A	p.Arg1008Gln	p.R1008Q	ENST00000447079	NM_015083.1	1008	cGg/cAg					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45368294	45368294	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	129	655	0	ENST00000262160.6:c.1308C>G	p.Cys436Trp	p.C436W	ENST00000262160	NM_005901.5	436	tgC/tgG					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148529796	148529796	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	297	405	0	ENST00000320356.2:c.293T>C	p.Leu98Ser	p.L98S	ENST00000320356	NM_004456.4	98	tTa/tCa					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4385246	4385246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	638	448	0	ENST00000261254.3:c.271G>T	p.Val91Phe	p.V91F	ENST00000261254	NM_001759.3	91	Gtc/Ttc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133210789	133210789	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	248	609	0	ENST00000320574.5:c.5987T>C	p.Phe1996Ser	p.F1996S	ENST00000320574	NM_006231.2	1996	tTc/tCc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28608095	28608095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	214	575	0	ENST00000241453.7:c.1871T>G	p.Val624Gly	p.V624G	ENST00000241453	NM_004119.2	624	gTg/gGg					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73346848	73346848	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	128	314	0	ENST00000377767.4:c.1369T>C	p.Trp457Arg	p.W457R	ENST00000377767	NM_014953.3	457	Tgg/Cgg					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2226383	2226383	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0007176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	167	436	0	ENST00000326181.6:c.1996A>C	p.Lys666Gln	p.K666Q	ENST00000326181	NM_032271.2	666	Aag/Cag					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41219643	41219643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	162	393	0	ENST00000357654.3:c.5056C>T	p.His1686Tyr	p.H1686Y	ENST00000357654	NM_007294.3	1686	Cat/Tat					NEWRECORD																																																																									
CD79A	0	MSKCC	GRCh37	19	42383156	42383156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2808	307	688	0	ENST00000221972.3:c.176G>A	p.Ser59Asn	p.S59N	ENST00000221972	NM_021601.3	59	aGc/aAc					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46264427	46264427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2046	412	781	0	ENST00000371998.3:c.1474A>G	p.Ile492Val	p.I492V	ENST00000371998		492	Ata/Gta					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76845291	76845304	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTTGTAGCTCACC	ATTTGTAGCTCACC	-			P-0007176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	156	265	0	ENST00000373344.5:c.6217_6217+13del		p.X2073_splice	ENST00000373344	NM_000489.3	2073						NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76845285	76845314	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGAAATATTTGTAGCTCACCTTTATAAATA	AGAAATATTTGTAGCTCACCTTTATAAATA	TGAAGATTTTCTTG			P-0007176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	160	290	0	ENST00000373344.5:c.6207_6217+19delinsCAAGAAAATCTTCA		p.X2069_splice	ENST00000373344	NM_000489.3	2069						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	76	350	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32166769	32166769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	35	304	0	ENST00000375023.3:c.4469G>A	p.Arg1490Gln	p.R1490Q	ENST00000375023	NM_004557.3	1490	cGg/cAg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139417614	139417634	+	inframe_deletion	In_Frame_Del	DEL	ACGGGTCAGCCTGCTGGCACG	ACGGGTCAGCCTGCTGGCACG	-			P-0007861-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	34	311	0	ENST00000277541.6:c.410_430del	p.Ser137_Pro143del	p.S137_P143del	ENST00000277541	NM_017617.3	137	tCGTGCCAGCAGGCTGACCCGTgc/tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0008154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	115	394	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	76	359	0	ENST00000269305.4:c.455C>T	p.Pro152Leu	p.P152L	ENST00000269305	NM_001126112.2	152	cCg/cTg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32168694	32168694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	66	544	0	ENST00000375023.3:c.4229G>T	p.Arg1410Leu	p.R1410L	ENST00000375023	NM_004557.3	1410	cGc/cTc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	189	204	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0007649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	330	389	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2962834	2962834	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	86	304	0	ENST00000396946.4:c.2074G>A	p.Val692Met	p.V692M	ENST00000396946	NM_032415.4	692	Gtg/Atg					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64138061	64138061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	92	284	1	ENST00000334205.4:c.1984C>T	p.Arg662Trp	p.R662W	ENST00000334205	NM_003942.2	662	Cgg/Tgg					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922940	39922941	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0007649-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	105	261	0	ENST00000378444.4:c.3767_3768del	p.Lys1256ThrfsTer20	p.K1256Tfs*20	ENST00000378444	NM_001123385.1	1256	aAA/a					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108186638	108186638	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0005933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	389	337	0	ENST00000278616.4:c.6095G>C	p.Arg2032Thr	p.R2032T	ENST00000278616	NM_000051.3	2032	aGa/aCa					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	84	366	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0004955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	76	407	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25982497	25982497	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0004955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	89	346	1	ENST00000435504.4:c.793A>T	p.Lys265Ter	p.K265*	ENST00000435504		265	Aaa/Taa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878718	151878718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004955-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	95	386	0	ENST00000262189.6:c.6227C>G	p.Ala2076Gly	p.A2076G	ENST00000262189	NM_170606.2	2076	gCt/gGt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	41	1271	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103520589	103520589	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	23	1311	0	ENST00000355739.4:c.2660A>G	p.Glu887Gly	p.E887G	ENST00000355739	NM_000123.3	887	gAa/gGa					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66774134	66774134	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	21	1664	2	ENST00000307102.5:c.610A>T	p.Ile204Phe	p.I204F	ENST00000307102	NM_002755.3	204	Atc/Ttc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779870	3779870	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	22	1463	3	ENST00000262367.5:c.5178C>A	p.Tyr1726Ter	p.Y1726*	ENST00000262367	NM_004380.2	1726	taC/taA					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044898	47044898	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006021-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	22	907	0	ENST00000329236.7:c.1990C>T	p.Gln664Ter	p.Q664*	ENST00000329236	NM_001204466.1	664	Cag/Tag					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55141052	55141066	+	inframe_deletion	In_Frame_Del	DEL	CCCAGATGGACATGA	CCCAGATGGACATGA	-			P-0009695-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	391	465	0	ENST00000257290.5:c.1698_1712del	p.Ser566_Glu571delinsArg	p.S566_E571delinsR	ENST00000257290	NM_006206.4	566	agCCCAGATGGACATGAa/aga					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86674356	86674356	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0009312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	73	145	1	ENST00000274376.6:c.2487+1G>A		p.X829_splice	ENST00000274376	NM_002890.2	829						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112137081	112137081	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0009312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	136	225	0	ENST00000257430.4:c.834+1G>C		p.X278_splice	ENST00000257430	NM_000038.5	278						NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46287479	46287479	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	214	376	0	ENST00000334344.6:c.5338G>C	p.Gly1780Arg	p.G1780R	ENST00000334344	NM_152641.2	1780	Ggt/Cgt					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65560509	65560509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	246	411	0	ENST00000358664.4:c.88G>C	p.Ala30Pro	p.A30P	ENST00000358664	NM_002382.4	30	Gca/Cca					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21968185	21968235	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	TGATCTAAGTTTCCCGAGGTTTCTCAGAGCCTCTCTGGTTCTTTCAATCGG	TGATCTAAGTTTCCCGAGGTTTCTCAGAGCCTCTCTGGTTCTTTCAATCGG	-			P-0009312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	170	43	0	ENST00000304494.5:c.464_*43delCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCA		p.*155*	ENST00000304494	NM_000077.4	155						NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21968185	21968235	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	TGATCTAAGTTTCCCGAGGTTTCTCAGAGCCTCTCTGGTTCTTTCAATCGG	TGATCTAAGTTTCCCGAGGTTTCTCAGAGCCTCTCTGGTTCTTTCAATCGG	-			P-0009312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	170	43	0	ENST00000304494.5:c.464_*43delCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCA		p.*155*	ENST00000304494	NM_000077.4	155						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578465	7578470	+	inframe_deletion	In_Frame_Del	DEL	GGTGCC	GGTGCC	-			P-0009312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	314	311	0	ENST00000269305.4:c.460_465del	p.Gly154_Thr155del	p.G154_T155del	ENST00000269305	NM_001126112.2	154	GGCACC/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	324	429	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	142	340	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0004862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	288	450	0	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227660408	227660408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	181	298	0	ENST00000305123.5:c.3047G>A	p.Arg1016Gln	p.R1016Q	ENST00000305123	NM_005544.2	1016	cGa/cAa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48878142	48878142	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	127	150	0	ENST00000267163.4:c.94G>A	p.Asp32Asn	p.D32N	ENST00000267163	NM_000321.2	32	Gac/Aac					NEWRECORD																																																																									
AURKB	0	MSKCC	GRCh37	17	8108583	8108583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	80	461	0	ENST00000585124.1:c.812C>T	p.Pro271Leu	p.P271L	ENST00000585124	NM_004217.3	271	cCa/cTa					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10262213	10262213	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	72	361	0	ENST00000340748.4:c.2078A>G	p.Asn693Ser	p.N693S	ENST00000340748		693	aAt/aGt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339230	70339230	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0009430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	88	395	0	ENST00000374080.3:c.107T>G	p.Leu36Arg	p.L36R	ENST00000374080		36	cTg/cGg					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38510609	38510609	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009430-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	93	302	0	ENST00000254066.5:c.863A>G	p.Asp288Gly	p.D288G	ENST00000254066	NM_000964.3	288	gAc/gGc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	194	683	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005460-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	160	697	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0008751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	86	475	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333143	70333143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	113	662	2	ENST00000373644.4:c.1048G>A	p.Glu350Lys	p.E350K	ENST00000373644	NM_030625.2	350	Gaa/Aaa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11130334	11130334	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	112	741	1	ENST00000344626.4:c.2573C>T	p.Thr858Met	p.T858M	ENST00000344626	NM_003072.3	858	aCg/aTg					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27840069	27840069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1225	215	1173	2	ENST00000328488.2:c.25C>T	p.Arg9Cys	p.R9C	ENST00000328488	NM_003533.2	9	Cgc/Tgc					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56867144	56867144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	104	514	0	ENST00000308159.5:c.1363G>A	p.Val455Met	p.V455M	ENST00000308159	NM_014669.4	455	Gtg/Atg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139400334	139400334	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	24	85	0	ENST00000277541.6:c.4015-1G>A		p.X1339_splice	ENST00000277541	NM_017617.3	1339						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578502	7578502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	119	404	0	ENST00000269305.4:c.428T>C	p.Val143Ala	p.V143A	ENST00000269305	NM_001126112.2	143	gTg/gCg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16202852	16202852	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	78	356	0	ENST00000375759.3:c.560G>T	p.Arg187Leu	p.R187L	ENST00000375759	NM_015001.2	187	cGg/cTg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120510233	120510233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	80	314	1	ENST00000256646.2:c.1276C>T	p.Pro426Ser	p.P426S	ENST00000256646	NM_024408.3	426	Cct/Tct					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243708851	243708851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	49	390	0	ENST00000263826.5:c.1212C>A	p.Phe404Leu	p.F404L	ENST00000263826	NM_005465.4	404	ttC/ttA					NEWRECORD																																																																									
CENPA	0	MSKCC	GRCh37	2	27016127	27016127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	81	471	0	ENST00000335756.4:c.403C>G	p.Leu135Val	p.L135V	ENST00000335756	NM_001809.3	135	Ctt/Gtt					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29551237	29551237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	62	384	1	ENST00000389048.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000389048	NM_004304.4	465	Gaa/Aaa					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48010547	48010547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	44	221	0	ENST00000234420.5:c.175C>T	p.Pro59Ser	p.P59S	ENST00000234420	NM_000179.2	59	Ccc/Tcc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52713624	52713624	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	101	436	0	ENST00000394830.3:c.104G>A	p.Arg35Lys	p.R35K	ENST00000394830	NM_018313.4	35	aGg/aAg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142268500	142268500	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	65	273	0	ENST00000350721.4:c.2992C>A	p.Leu998Ile	p.L998I	ENST00000350721	NM_001184.3	998	Cta/Ata					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55972909	55972909	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	83	369	1	ENST00000263923.4:c.1481G>A	p.Gly494Glu	p.G494E	ENST00000263923	NM_002253.2	494	gGa/gAa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187540740	187540740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	74	398	0	ENST00000441802.2:c.7000C>T	p.His2334Tyr	p.H2334Y	ENST00000441802	NM_005245.3	2334	Cat/Tat					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176520274	176520274	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	39	200	1	ENST00000292408.4:c.1193G>A	p.Arg398Gln	p.R398Q	ENST00000292408	NM_213647.1	398	cGg/cAg					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176524564	176524564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	63	442	0	ENST00000292408.4:c.2296C>T	p.Pro766Ser	p.P766S	ENST00000292408	NM_213647.1	766	Ccc/Tcc					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162683581	162683581	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	61	307	0	ENST00000366898.1:c.388G>C	p.Asp130His	p.D130H	ENST00000366898	NM_004562.2	130	Gac/Cac					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508937	106508937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	60	258	0	ENST00000359195.3:c.931C>T	p.Pro311Ser	p.P311S	ENST00000359195	NM_002649.2	311	Cca/Tca					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116397511	116397511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	92	414	2	ENST00000397752.3:c.1883C>T	p.Pro628Leu	p.P628L	ENST00000397752	NM_000245.2	628	cCt/cTt					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90965596	90965596	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	82	453	0	ENST00000265433.3:c.1721T>C	p.Leu574Ser	p.L574S	ENST00000265433	NM_002485.4	574	tTa/tCa					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98218696	98218696	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	84	212	0	ENST00000331920.6:c.3169-1G>A		p.X1057_splice	ENST00000331920	NM_000264.3	1057						NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900209	101900209	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	176	453	0	ENST00000374994.4:c.643C>T	p.Arg215Ter	p.R215*	ENST00000374994	NM_004612.2	215	Cga/Tga					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43615113	43615113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	82	467	2	ENST00000355710.3:c.2527G>A	p.Glu843Lys	p.E843K	ENST00000355710	NM_020975.4	843	Gag/Aag					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64572213	64572213	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	87	336	0	ENST00000337652.1:c.1441C>T	p.Arg481Trp	p.R481W	ENST00000337652	NM_130803.2	481	Cgg/Tgg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245102	46245102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	58	341	0	ENST00000334344.6:c.3196C>T	p.Pro1066Ser	p.P1066S	ENST00000334344	NM_152641.2	1066	Ccg/Tcg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133253136	133253136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	58	326	0	ENST00000320574.5:c.905G>A	p.Gly302Asp	p.G302D	ENST00000320574	NM_006231.2	302	gGc/gAc					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21563093	21563093	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	82	285	1	ENST00000382592.4:c.826C>T	p.Gln276Ter	p.Q276*	ENST00000382592	NM_014572.2	276	Cag/Tag					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36988574	36988574	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	89	528	0	ENST00000354822.5:c.79C>T	p.Arg27Cys	p.R27C	ENST00000354822	NM_001079668.2	27	Cgc/Tgc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42002997	42002997	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	120	622	0	ENST00000219905.7:c.2534C>T	p.Ser845Phe	p.S845F	ENST00000219905	NM_001164273.1	845	tCt/tTt					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89348752	89348752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	115	645	1	ENST00000301030.4:c.4198G>A	p.Asp1400Asn	p.D1400N	ENST00000301030	NM_001256183.1	1400	Gat/Aat					NEWRECORD																																																																									
AURKB	0	MSKCC	GRCh37	17	8110126	8110126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	51	284	0	ENST00000585124.1:c.479G>A	p.Gly160Glu	p.G160E	ENST00000585124	NM_004217.3	160	gGg/gAg					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2191030	2191030	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	66	350	0	ENST00000398665.3:c.284C>T	p.Pro95Leu	p.P95L	ENST00000398665	NM_032482.2	95	cCc/cTc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17955096	17955096	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201650430		P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	62	343	0	ENST00000458235.1:c.131C>T	p.Ser44Phe	p.S44F	ENST00000458235	NM_000215.3	44	tCc/tTc					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50902277	50902277	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	106	590	1	ENST00000440232.2:c.169G>A	p.Glu57Lys	p.E57K	ENST00000440232	NM_002691.3	57	Gag/Aag					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50909463	50909463	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	88	487	1	ENST00000440232.2:c.1267C>T	p.Arg423Cys	p.R423C	ENST00000440232	NM_002691.3	423	Cgt/Tgt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40770597	40770597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	74	327	0	ENST00000373198.4:c.2785G>A	p.Asp929Asn	p.D929N	ENST00000373198	NM_133170.3	929	Gat/Aat					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40877453	40877453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	61	359	0	ENST00000373198.4:c.2243C>A	p.Thr748Asn	p.T748N	ENST00000373198	NM_133170.3	748	aCc/aAc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41546029	41546029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	72	406	0	ENST00000263253.7:c.2644C>T	p.Pro882Ser	p.P882S	ENST00000263253	NM_001429.3	882	Cca/Tca					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128038130	128038130	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	104	360	0	ENST00000285398.2:c.1420del	p.Asp474MetfsTer7	p.D474Mfs*7	ENST00000285398	NM_000122.1	474	Gat/at					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52702576	52702578	+	frameshift_variant	Frame_Shift_Del	DEL	CAT	CAT	TA			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	92	375	0	ENST00000394830.3:c.320_322delinsTA	p.Asp107ValfsTer6	p.D107Vfs*6	ENST00000394830	NM_018313.4	107	gATGat/gTAat					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	54	214	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2985472	2985473	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0005703-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	71	423	0	ENST00000396946.4:c.338_339delinsAA	p.Arg113Gln	p.R113Q	ENST00000396946	NM_032415.4	113	cGG/cAA					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	127	313	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	249	353	2	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50459531	50459531	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	273	279	0	ENST00000331340.3:c.820C>T	p.Arg274Cys	p.R274C	ENST00000331340	NM_006060.4	274	Cgt/Tgt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29585423	29585423	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	362	345	0	ENST00000358273.4:c.4235G>T	p.Arg1412Ile	p.R1412I	ENST00000358273	NM_001042492.2	1412	aGa/aTa					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5066678	5066704	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	GATGGATTTTGCCATTAGTAAACTGAA	GATGGATTTTGCCATTAGTAAACTGAA	-			P-0008474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	236	425	0	ENST00000381652.3:c.1217_1243del	p.Met406_Lys414del	p.M406_K414del	ENST00000381652	NM_004972.3	405	tcGATGGATTTTGCCATTAGTAAACTGAAg/tcg					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156845322	156845339	+	inframe_deletion	In_Frame_Del	DEL	GCTGGCTCCAGAGGATGG	GCTGGCTCCAGAGGATGG	-			P-0008474-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	382	596	0	ENST00000524377.1:c.1371_1388del	p.Pro458_Ala463del	p.P458_A463del	ENST00000524377	NM_002529.3	455	gtGCTGGCTCCAGAGGATGGg/gtg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	409	364	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	34	394	0	ENST00000369535.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000369535	NM_002524.4	61	cAa/cTa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0006512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	128	351	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0006512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	29	230	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220439858	220439858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	142	587	0	ENST00000243786.2:c.711G>A	p.Met237Ile	p.M237I	ENST00000243786	NM_002191.3	237	atG/atA					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048668	180048668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	55	322	2	ENST00000261937.6:c.1894C>T	p.Arg632Cys	p.R632C	ENST00000261937	NM_182925.4	632	Cgc/Tgc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118352801	118352801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	69	224	0	ENST00000534358.1:c.4006G>C	p.Glu1336Gln	p.E1336Q	ENST00000534358	NM_005933.3	1336	Gaa/Caa					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30325846	30325846	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	130	278	1	ENST00000322652.5:c.2044C>T	p.Arg682Cys	p.R682C	ENST00000322652	NM_015355.2	682	Cgt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	78	301	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123325170	123325170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	79	326	0	ENST00000358487.5:c.158C>T	p.Ala53Val	p.A53V	ENST00000358487	NM_000141.4	53	gCg/gTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0007070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	229	495	2	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224						NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45867303	45867303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	150	209	0	ENST00000391945.4:c.890C>T	p.Ala297Val	p.A297V	ENST00000391945	NM_000400.3	297	gCc/gTc					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36939168	36939168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	57	488	2	ENST00000361632.4:c.541G>A	p.Asp181Asn	p.D181N	ENST00000361632		181	Gac/Aac					NEWRECORD																																																																									
INSRR	0	MSKCC	GRCh37	1	156812015	156812015	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	17	104	0	ENST00000368195.3:c.3286G>C	p.Ala1096Pro	p.A1096P	ENST00000368195	NM_014215.2	1096	Gct/Cct					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56495384	56495384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	53	395	0	ENST00000267101.3:c.3574G>C	p.Asp1192His	p.D1192H	ENST00000267101	NM_001982.3	1192	Gat/Cat					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28626737	28626737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	49	374	1	ENST00000241453.7:c.559G>A	p.Glu187Lys	p.E187K	ENST00000241453	NM_004119.2	187	Gag/Aag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32905152	32905152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	16	243	0	ENST00000380152.3:c.778G>C	p.Glu260Gln	p.E260Q	ENST00000380152		260	Gaa/Caa					NEWRECORD																																																																									
RAD51	0	MSKCC	GRCh37	15	41021008	41021008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	52	400	0	ENST00000267868.3:c.630G>A	p.Met210Ile	p.M210I	ENST00000267868	NM_002875.4	210	atG/atA					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67663428	67663428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009188-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	520	337	0	ENST00000264010.4:c.1829C>T	p.Ser610Phe	p.S610F	ENST00000264010	NM_006565.3	610	tCt/tTt					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0009937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	130	477	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041401	47041401	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	154	578	0	ENST00000329236.7:c.1511A>G	p.Tyr504Cys	p.Y504C	ENST00000329236	NM_001204466.1	504	tAt/tGt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47006891	47006891	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009937-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	80	401	0	ENST00000329236.7:c.13del	p.Arg5AspfsTer80	p.R5Dfs*80	ENST00000329236	NM_001204466.1	4	gAa/ga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0006613-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			509	21	260	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	185	259	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
ID3	0	MSKCC	GRCh37	1	23885835	23885835	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	112	704	0	ENST00000374561.5:c.83G>C	p.Arg28Pro	p.R28P	ENST00000374561	NM_002167.4	28	cGa/cCa					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65309827	65309827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	108	530	0	ENST00000342505.4:c.2323G>A	p.Asp775Asn	p.D775N	ENST00000342505	NM_002227.2	775	Gac/Aac					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65310572	65310572	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	165	352	0	ENST00000342505.4:c.2116G>A	p.Glu706Lys	p.E706K	ENST00000342505	NM_002227.2	706	Gag/Aag					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226574083	226574083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	81	601	0	ENST00000366794.5:c.778G>A	p.Asp260Asn	p.D260N	ENST00000366794	NM_001618.3	260	Gac/Aac					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61121646	61121646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	108	386	0	ENST00000295025.8:c.268G>A	p.Glu90Lys	p.E90K	ENST00000295025	NM_002908.2	90	Gaa/Aaa					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215610579	215610579	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	108	382	0	ENST00000260947.4:c.1678-1G>T		p.X560_splice	ENST00000260947	NM_000465.2	560						NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128204626	128204626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	77	583	0	ENST00000341105.2:c.815G>T	p.Gly272Val	p.G272V	ENST00000341105	NM_032638.4	272	gGg/gTg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55524236	55524236	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	107	525	0	ENST00000288135.5:c.55C>G	p.Arg19Gly	p.R19G	ENST00000288135	NM_000222.2	19	Cgc/Ggc					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729782	41729782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	152	722	0	ENST00000242208.4:c.747G>C	p.Glu249Asp	p.E249D	ENST00000242208	NM_002192.2	249	gaG/gaC					NEWRECORD																																																																									
EED	0	MSKCC	GRCh37	11	85989440	85989440	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	114	382	0	ENST00000263360.6:c.1200-1G>C		p.X400_splice	ENST00000263360	NM_003797.3	400						NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88690579	88690579	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	28	399	0	ENST00000360948.2:c.451A>T	p.Ser151Cys	p.S151C	ENST00000360948	NM_001012338.2	151	Agt/Tgt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29576048	29576048	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	114	591	1	ENST00000358273.4:c.4021C>T	p.Gln1341Ter	p.Q1341*	ENST00000358273	NM_001042492.2	1341	Cag/Tag					NEWRECORD																																																																									
SRSF2	0	MSKCC	GRCh37	17	74732950	74732950	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	177	392	0	ENST00000359995.5:c.293C>G	p.Ser98Ter	p.S98*	ENST00000359995	NM_001195427.1	98	tCa/tGa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420311	49420460	+	inframe_deletion	In_Frame_Del	DEL	CAGCTCTTGCTCACAGGGCCCCTTGATCTTATGCATTGGACACAGCATGGTCTTGTCCTTGAAGAACATGCACTTGGCACGGATGGCACAAGCAAAATGGTAGACATTGGGGCAACGCATGCGATTGCAGCTGCTGGTGGCACCAGTTCG	CAGCTCTTGCTCACAGGGCCCCTTGATCTTATGCATTGGACACAGCATGGTCTTGTCCTTGAAGAACATGCACTTGGCACGGATGGCACAAGCAAAATGGTAGACATTGGGGCAACGCATGCGATTGCAGCTGCTGGTGGCACCAGTTCG	-			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	117	588	0	ENST00000301067.7:c.15289_15438del	p.Arg5097_Leu5146del	p.R5097_L5146del	ENST00000301067	NM_003482.3	5097	CGAACTGGTGCCACCAGCAGCTGCAATCGCATGCGTTGCCCCAATGTCTACCATTTTGCTTGTGCCATCCGTGCCAAGTGCATGTTCTTCAAGGACAAGACCATGCTGTGTCCAATGCATAAGATCAAGGGGCCCTGTGAGCAAGAGCTG/-					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72428425	72428425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	173	506	0	ENST00000477973.2:c.577del	p.Asn195IlefsTer13	p.N195Ifs*13	ENST00000477973	NM_012234.5	193	aaG/aa					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115830	8115837	+	frameshift_variant	Frame_Shift_Del	DEL	CCCGGCCG	CCCGGCCG	-			P-0005691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	130	758	0	ENST00000346208.3:c.1179_1186delGGCCGCCC	p.Ala394LeufsTer110	p.A394Lfs*110	ENST00000346208		392	aaCCCGGCCGcc/aacc					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55129857	55129857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	51	519	0	ENST00000257290.5:c.391C>A	p.Leu131Ile	p.L131I	ENST00000257290	NM_006206.4	131	Cta/Ata					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100611108	100611108	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	86	788	2	ENST00000308731.7:c.1498G>T	p.Glu500Ter	p.E500*	ENST00000308731	NM_000061.2	500	Gag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	340	321	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	179	460	0	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970971	21970971	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	179	460	0	ENST00000304494.5:c.387C>A	p.Tyr129Ter	p.Y129*	ENST00000304494	NM_000077.4	129	taC/taA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	55	418	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	98	411	0	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261						NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36651960	36651960	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	51	262	0	ENST00000244741.5:c.82G>A	p.Glu28Lys	p.E28K	ENST00000244741	NM_000389.4	28	Gag/Aag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913468	32913468	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	360	739	0	ENST00000380152.3:c.4976C>G	p.Ser1659Cys	p.S1659C	ENST00000380152		1659	tCc/tGc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32915261	32915261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	323	713	0	ENST00000380152.3:c.6769C>T	p.Pro2257Ser	p.P2257S	ENST00000380152		2257	Ccc/Tcc					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	343540	343540	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	37	474	0	ENST00000262320.3:c.2134C>T	p.Arg712Ter	p.R712*	ENST00000262320	NM_003502.3	712	Cga/Tga					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68867370	68867370	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	22	389	0	ENST00000261769.5:c.2617G>A	p.Ala873Thr	p.A873T	ENST00000261769	NM_004360.3	873	Gct/Act					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29490259	29490259	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007497-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	64	495	0	ENST00000358273.4:c.344C>T	p.Pro115Leu	p.P115L	ENST00000358273	NM_001042492.2	115	cCa/cTa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	142	419	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21970969	21970969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	100	343	0	ENST00000304494.5:c.389T>A	p.Leu130Gln	p.L130Q	ENST00000304494	NM_000077.4	130	cTg/cAg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970969	21970969	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	100	343	0	ENST00000304494.5:c.389T>A	p.Leu130Gln	p.L130Q	ENST00000304494	NM_000077.4	130	cTg/cAg					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157519968	157519968	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	140	401	0	ENST00000346085.5:c.4037A>G	p.Tyr1346Cys	p.Y1346C	ENST00000346085	NM_020732.3	1346	tAt/tGt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591917	48591931	+	inframe_deletion	In_Frame_Del	DEL	TCGCTTTTGTTTGGG	TCGCTTTTGTTTGGG	-			P-0009047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	98	480	0	ENST00000342988.3:c.1082_1096del	p.Arg361_Gly365del	p.R361_G365del	ENST00000342988	NM_005359.5	360	gaTCGCTTTTGTTTGGGt/gat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578482	7578482	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009047-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	106	370	0	ENST00000269305.4:c.448del	p.Thr150HisfsTer20	p.T150Hfs*20	ENST00000269305	NM_001126112.2	150	Aca/ca					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610581	10610583	+	frameshift_variant	Frame_Shift_Del	DEL	CGT	CGT	A			P-0007665-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	11	457	0	ENST00000171111.5:c.127_129delinsT	p.Thr43SerfsTer35	p.T43Sfs*35	ENST00000171111	NM_203500.1	43	ACG/T					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225367699	225367699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	36	511	1	ENST00000264414.4:c.1468C>T	p.His490Tyr	p.H490Y	ENST00000264414	NM_003590.4	490	Cat/Tat					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55136862	55136862	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	79	622	0	ENST00000257290.5:c.1184T>G	p.Val395Gly	p.V395G	ENST00000257290	NM_006206.4	395	gTa/gGa					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72822270	72822270	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1640	499	724	0	ENST00000268489.5:c.9905del	p.Leu3302CysfsTer51	p.L3302Cfs*51	ENST00000268489	NM_006885.3	3302	tTg/tg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52696230	52696230	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	90	525	0	ENST00000394830.3:c.447del	p.Asn149LysfsTer25	p.N149Kfs*25	ENST00000394830	NM_018313.4	149	aaT/aa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47098908	47098908	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	109	437	0	ENST00000409792.3:c.6366del	p.Lys2123SerfsTer24	p.K2123Sfs*24	ENST00000409792	NM_014159.6	2122	cgG/cg					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	567	320	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	182	350	1	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	94	380	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0006821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	82	440	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	171	513	1	ENST00000269305.4:c.764T>A	p.Ile255Asn	p.I255N	ENST00000269305	NM_001126112.2	255	aTc/aAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0006821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	86	292	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116436039	116436039	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	283	547	2	ENST00000397752.3:c.4034T>C	p.Ile1345Thr	p.I1345T	ENST00000397752	NM_000245.2	1345	aTt/aCt					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54961502	54961502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	53	370	0	ENST00000312783.6:c.130G>T	p.Ala44Ser	p.A44S	ENST00000312783	NM_198436.1	44	Gct/Tct					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004007-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			596	168	477	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004007-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			227	67	392	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004007-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			434	112	458	0	ENST00000288602.6:c.1406G>A	p.Gly469Glu	p.G469E	ENST00000288602	NM_004333.4	469	gGa/gAa					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371684	55371684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004007-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			215	18	329	0	ENST00000297316.4:c.374G>A	p.Arg125His	p.R125H	ENST00000297316	NM_022454.3	125	cGc/cAc					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	405041	405041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004007-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			385	69	468	0	ENST00000380956.4:c.1123G>A	p.Gly375Ser	p.G375S	ENST00000380956	NM_001195286.1	375	Ggc/Agc					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123276844	123276844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004007-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			322	40	443	1	ENST00000358487.5:c.1073C>T	p.Thr358Ile	p.T358I	ENST00000358487	NM_000141.4	358	aCa/aTa					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67358684	67358684	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004007-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			328	121	427	0	ENST00000327367.4:c.192C>A	p.Cys64Ter	p.C64*	ENST00000327367	NM_005902.3	64	tgC/tgA					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	144	292	0	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32953587	32953587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005205-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	94	413	0	ENST00000380152.3:c.8888C>T	p.Ser2963Leu	p.S2963L	ENST00000380152		2963	tCa/tTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	639	451	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30673595	30673595	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	359	881	0	ENST00000376406.3:c.3365C>G	p.Ser1122Cys	p.S1122C	ENST00000376406	NM_014641.2	1122	tCt/tGt					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77047227	77047227	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	261	563	0	ENST00000356341.3:c.1317G>C	p.Lys439Asn	p.K439N	ENST00000356341	NM_002576.4	439	aaG/aaC					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	43	290	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180057002	180057002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	67	475	1	ENST00000261937.6:c.617G>A	p.Cys206Tyr	p.C206Y	ENST00000261937	NM_182925.4	206	tGc/tAc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8340378	8340378	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	67	420	0	ENST00000356435.5:c.5218G>T	p.Val1740Phe	p.V1740F	ENST00000356435		1740	Gtt/Ttt					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8111447	8111447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	75	375	1	ENST00000346208.3:c.933G>T	p.Arg311Ser	p.R311S	ENST00000346208		311	agG/agT					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1619416	1619416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	89	441	1	ENST00000344749.5:c.1225G>T	p.Val409Leu	p.V409L	ENST00000344749	NM_001136139.2	409	Gtg/Ttg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66863233	66863233	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	56	461	0	ENST00000374690.3:c.1752C>A	p.Phe584Leu	p.F584L	ENST00000374690	NM_000044.3	584	ttC/ttA					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	318	591	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876193	35876193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	298	790	1	ENST00000303115.3:c.985C>T	p.Pro329Ser	p.P329S	ENST00000303115	NM_002185.3	329	Cct/Tct					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42052720	42052720	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	277	772	1	ENST00000219905.7:c.7391T>C	p.Leu2464Pro	p.L2464P	ENST00000219905	NM_001164273.1	2464	cTt/cCt					NEWRECORD																																																																									
PPP6C	0	MSKCC	GRCh37	9	127912048	127912048	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	500	996	1	ENST00000373547.4:c.822del	p.Phe274LeufsTer4	p.F274Lfs*4	ENST00000373547	NM_002721.4	274	ttC/tt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68845753	68845753	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	303	681	0	ENST00000261769.5:c.1000del	p.Asp334ThrfsTer22	p.D334Tfs*22	ENST00000261769	NM_004360.3	333	ctG/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578503	7578503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	146	447	1	ENST00000269305.4:c.427G>A	p.Val143Met	p.V143M	ENST00000269305	NM_001126112.2	143	Gtg/Atg					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0006217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	22	120	2	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg					NEWRECORD																																																																									
FGF19	0	MSKCC	GRCh37	11	69514047	69514047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006217-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	39	510	0	ENST00000294312.3:c.634C>T	p.Pro212Ser	p.P212S	ENST00000294312	NM_005117.2	212	Ccc/Tcc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	303	325	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	253	780	0	ENST00000244661.2:c.316G>C	p.Glu106Gln	p.E106Q	ENST00000244661	NM_003537.3	106	Gag/Cag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602823	10602823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	367	506	0	ENST00000171111.5:c.755G>T	p.Trp252Leu	p.W252L	ENST00000171111	NM_203500.1	252	tGg/tTg					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156851382	156851382	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	157	518	0	ENST00000524377.1:c.2339G>T	p.Arg780Leu	p.R780L	ENST00000524377	NM_002529.3	780	cGg/cTg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162724521	162724521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	187	597	2	ENST00000367921.3:c.293C>A	p.Thr98Asn	p.T98N	ENST00000367921	NM_006182.2	98	aCt/aAt					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25523103	25523103	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	160	417	0	ENST00000264709.3:c.82G>T	p.Glu28Ter	p.E28*	ENST00000264709	NM_175629.2	28	Gag/Tag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125789	47125789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	306	408	0	ENST00000409792.3:c.5481G>T	p.Trp1827Cys	p.W1827C	ENST00000409792	NM_014159.6	1827	tgG/tgT					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134644668	134644668	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	105	457	0	ENST00000398015.3:c.69G>C	p.Met23Ile	p.M23I	ENST00000398015	NM_004441.4	23	atG/atC					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30680812	30680812	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1443	193	632	0	ENST00000376406.3:c.907G>T	p.Val303Leu	p.V303L	ENST00000376406	NM_014641.2	303	Gtg/Ttg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94066557	94066557	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	567	870	0	ENST00000369303.4:c.1202C>T	p.Thr401Ile	p.T401I	ENST00000369303	NM_004440.3	401	aCt/aTt					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41739790	41739790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	443	798	0	ENST00000242208.4:c.183C>A	p.His61Gln	p.H61Q	ENST00000242208	NM_002192.2	61	caC/caA					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98209511	98209511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	225	421	1	ENST00000331920.6:c.4027G>T	p.Gly1343Trp	p.G1343W	ENST00000331920	NM_000264.3	1343	Ggg/Tgg					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900231	101900231	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	480	698	0	ENST00000374994.4:c.665G>A	p.Gly222Glu	p.G222E	ENST00000374994	NM_004612.2	222	gGa/gAa					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69633641	69633641	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	52	94	0	ENST00000334134.2:c.61C>A	p.Pro21Thr	p.P21T	ENST00000334134	NM_005247.2	21	Cct/Act					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344669	118344669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	429	500	1	ENST00000534358.1:c.2795G>T	p.Gly932Val	p.G932V	ENST00000534358	NM_005933.3	932	gGg/gTg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18699296	18699296	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	203	638	0	ENST00000266497.5:c.3397G>C	p.Asp1133His	p.D1133H	ENST00000266497		1133	Gac/Cac					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28891714	28891714	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	542	603	0	ENST00000282397.4:c.3307G>T	p.Val1103Leu	p.V1103L	ENST00000282397	NM_002019.4	1103	Gta/Tta					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56782264	56782264	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	483	766	0	ENST00000308159.5:c.105G>C	p.Glu35Asp	p.E35D	ENST00000308159	NM_014669.4	35	gaG/gaC					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72832400	72832400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	1359	828	0	ENST00000268489.5:c.4181C>A	p.Ser1394Ter	p.S1394*	ENST00000268489	NM_006885.3	1394	tCa/tAa					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89347312	89347312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	994	805	0	ENST00000301030.4:c.5638G>C	p.Glu1880Gln	p.E1880Q	ENST00000301030	NM_001256183.1	1880	Gag/Cag					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7218302	7218302	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	367	591	0	ENST00000380728.2:c.70A>G	p.Met24Val	p.M24V	ENST00000380728		24	Atg/Gtg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546913	9546913	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	173	420	0	ENST00000353224.5:c.1109G>T	p.Ser370Ile	p.S370I	ENST00000353224	NM_177990.2	370	aGt/aTt					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9624824	9624824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	138	418	0	ENST00000353224.5:c.153G>T	p.Lys51Asn	p.K51N	ENST00000353224	NM_177990.2	51	aaG/aaT					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7216380	7216380	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	387	508	0	ENST00000380728.2:c.868delC	p.Gln290SerfsTer55	p.Q290Sfs*55	ENST00000380728		290	Cag/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577534	7577536	+	missense_variant	Missense_Mutation	ONP	CCT	CCT	ACC			P-0008406-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	318	494	0	ENST00000269305.4:c.745_747delinsGGT	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	AGG/GGT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	44	299	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	46	345	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	54	396	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	63	694	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100909864	100909864	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	40	544	0	ENST00000325455.5:c.2785C>T	p.Leu929Phe	p.L929F	ENST00000325455	NM_001202474.3	929	Ctc/Ttc					NEWRECORD																																																																									
B2M	567	MSKCC	GRCh37	15	45003781	45003782	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	293	365	0	ENST00000558401.1:c.43_44del	p.Leu15PhefsTer41	p.L15Ffs*41	ENST00000558401	NM_004048.2	13	CTc/c					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	193	233	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	67	151	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174814	112174814	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	159	386	0	ENST00000257430.4:c.3523C>T	p.Gln1175Ter	p.Q1175*	ENST00000257430	NM_000038.5	1175	Cag/Tag					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49936349	49936349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	540	655	2	ENST00000296474.3:c.1499G>A	p.Arg500Gln	p.R500Q	ENST00000296474	NM_002447.2	500	cGg/cAg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42003272	42003272	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	402	705	0	ENST00000219905.7:c.2809A>T	p.Lys937Ter	p.K937*	ENST00000219905	NM_001164273.1	937	Aag/Tag					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31388036	31388036	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2110	227	473	0	ENST00000328111.2:c.1837G>T	p.Val613Phe	p.V613F	ENST00000328111	NM_006892.3	613	Gtt/Ttt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0007774-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	154	344	0	ENST00000256078.4:c.34_35delinsTC	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	GGt/TCt					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0009079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	68	323	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt					NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22127176	22127176	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	53	408	1	ENST00000215832.6:c.952G>A	p.Asp318Asn	p.D318N	ENST00000215832	NM_002745.4	318	Gac/Aac					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44929602	44929602	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	134	207	0	ENST00000377967.4:c.2702G>A	p.Arg901Lys	p.R901K	ENST00000377967	NM_021140.2	901	aGg/aAg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68847275	68847277	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0009079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	56	388	0	ENST00000261769.5:c.1199_1201del	p.Asp400del	p.D400del	ENST00000261769	NM_004360.3	399	acTGAt/act					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0007026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	65	271	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	446	214	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242795067	242795067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	152	346	0	ENST00000334409.5:c.142G>A	p.Asp48Asn	p.D48N	ENST00000334409	NM_005018.2	48	Gac/Aac					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52668799	52668799	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	47	244	0	ENST00000394830.3:c.1120G>C	p.Glu374Gln	p.E374Q	ENST00000394830	NM_018313.4	374	Gaa/Caa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141523	11141523	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	64	331	0	ENST00000344626.4:c.3500C>G	p.Ser1167Trp	p.S1167W	ENST00000344626	NM_003072.3	1167	tCg/tGg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47035972	47035972	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1171	130	439	0	ENST00000329236.7:c.419G>A	p.Trp140Ter	p.W140*	ENST00000329236	NM_001204466.1	140	tGg/tAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0006014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	248	586	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0006014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	123	363	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133263882	133263882	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	45	277	0	ENST00000320574.5:c.20G>T	p.Gly7Val	p.G7V	ENST00000320574	NM_006231.2	7	gGg/gTg					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37879794	37879794	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	660	341	1	ENST00000269571.5:c.2089G>T	p.Val697Leu	p.V697L	ENST00000269571		697	Gtg/Ttg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444561	49444564	+	frameshift_variant	Frame_Shift_Del	DEL	GGAG	GGAG	-			P-0006014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	94	322	0	ENST00000301067.7:c.2807_2810del	p.Pro936LeufsTer21	p.P936Lfs*21	ENST00000301067	NM_003482.3	936	cCTCCt/ct					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55564516	55564516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	182	297	1	ENST00000288135.5:c.404G>A	p.Arg135His	p.R135H	ENST00000288135	NM_000222.2	135	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	253	278	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16261103	16261103	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	103	241	0	ENST00000375759.3:c.8368A>T	p.Met2790Leu	p.M2790L	ENST00000375759	NM_015001.2	2790	Atg/Ttg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212295789	212295789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	351	397	0	ENST00000342788.4:c.2524C>T	p.Arg842Trp	p.R842W	ENST00000342788	NM_005235.2	842	Cgg/Tgg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437585	52437585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	537	649	0	ENST00000460680.1:c.1576C>T	p.His526Tyr	p.H526Y	ENST00000460680	NM_004656.3	526	Cac/Tac					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13971324	13971324	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1568	271	411	1	ENST00000405192.2:c.605C>T	p.Thr202Met	p.T202M	ENST00000405192	NM_001163147.1	202	aCg/aTg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140476733	140476733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	182	409	0	ENST00000288602.6:c.1673G>A	p.Arg558Gln	p.R558Q	ENST00000288602	NM_004333.4	558	cGa/cAa					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100271	8100271	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	304	293	0	ENST00000346208.3:c.245G>T	p.Ser82Ile	p.S82I	ENST00000346208		82	aGc/aTc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52663030	52663032	+	inframe_deletion	In_Frame_Del	DEL	TTC	TTC	-			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	207	271	0	ENST00000394830.3:c.1321_1323del	p.Glu441del	p.E441del	ENST00000394830	NM_018313.4	441	GAA/-					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164629	112164630	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	304	356	0	ENST00000257430.4:c.1706_1707del	p.Val569GlufsTer11	p.V569Efs*11	ENST00000257430	NM_000038.5	568	aGT/a					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175487	112175487	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	154	320	0	ENST00000257430.4:c.4196del	p.Arg1399LeufsTer16	p.R1399Lfs*16	ENST00000257430	NM_000038.5	1399	cGt/ct					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0006198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	331	500	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89499393	89499393	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	97	510	1	ENST00000336596.2:c.2563C>T	p.Gln855Ter	p.Q855*	ENST00000336596	NM_005233.5	855	Cag/Tag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087503	27087503	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	44	327	0	ENST00000324856.7:c.2077C>T	p.Arg693Ter	p.R693*	ENST00000324856	NM_006015.4	693	Cga/Tga					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	91	555	0	ENST00000418115.1:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000418115	NM_001664.2	42	tAt/tGt					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67477149	67477149	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005168-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	43	406	0	ENST00000327367.4:c.956A>G	p.Asn319Ser	p.N319S	ENST00000327367	NM_005902.3	319	aAc/aGc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	401	319	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1625	429	283	2	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061465	38061465	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1197	452	347	0	ENST00000250448.2:c.524A>G	p.Tyr175Cys	p.Y175C	ENST00000250448	NM_004496.3	175	tAc/tGc					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59857716	59857716	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1576	536	447	0	ENST00000259008.2:c.1841C>A	p.Ser614Tyr	p.S614Y	ENST00000259008	NM_032043.2	614	tCt/tAt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000208-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			316	104	601	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46509386	46509386	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000208-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			378	130	644	0	ENST00000262741.5:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000262741	NM_003629.3	449	Gcc/Acc					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158617517	158617517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000208-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			488	189	771	0	ENST00000263640.3:c.1139G>A	p.Arg380His	p.R380H	ENST00000263640	NM_001105.4	380	cGc/cAc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	35	540	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0005059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	63	536	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0005059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	65	414	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174901	112174901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	102	495	0	ENST00000257430.4:c.3610C>T	p.Gln1204Ter	p.Q1204*	ENST00000257430	NM_000038.5	1204	Caa/Taa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717751	89717751	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	57	244	0	ENST00000371953.3:c.776A>C	p.His259Pro	p.H259P	ENST00000371953	NM_000314.4	259	cAc/cCc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0005027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	125	548	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578490	7578490	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	287	474	0	ENST00000269305.4:c.440T>G	p.Val147Gly	p.V147G	ENST00000269305	NM_001126112.2	147	gTt/gGt					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46511629	46511629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	34	566	0	ENST00000262741.5:c.1148G>A	p.Arg383His	p.R383H	ENST00000262741	NM_003629.3	383	cGt/cAt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8465530	8465530	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	55	576	0	ENST00000356435.5:c.3650A>G	p.Lys1217Arg	p.K1217R	ENST00000356435		1217	aAg/aGg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0009651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	297	819	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591247	67591249	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GGT	GGT	-			P-0009651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	101	509	0	ENST00000274335.5:c.1748_1750delGGT		p.X583_splice	ENST00000274335		583						NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	168	571	1	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98209617	98209617	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	15	258	0	ENST00000331920.6:c.3921delC	p.Arg1308GlufsTer64	p.R1308Efs*64	ENST00000331920	NM_000264.3	1307	ccC/cc					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131927616	131927616	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	69	589	0	ENST00000265335.6:c.1683T>A	p.Asp561Glu	p.D561E	ENST00000265335		561	gaT/gaA					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56488223	56488223	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	130	568	0	ENST00000267101.3:c.1742A>T	p.Asp581Val	p.D581V	ENST00000267101	NM_001982.3	581	gAt/gTt					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15302390	15302390	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146578114		P-0009651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	28	783	0	ENST00000263388.2:c.881C>T	p.Thr294Met	p.T294M	ENST00000263388	NM_000435.2	294	aCg/aTg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	40	310	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	42	322	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	72	595	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	21	511	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781386	135781386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	65	796	2	ENST00000298552.3:c.1579C>T	p.Gln527Ter	p.Q527*	ENST00000298552	NM_001162426.1	527	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	26	489	1	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32						NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45860557	45860557	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	82	650	0	ENST00000391945.4:c.1450A>G	p.Thr484Ala	p.T484A	ENST00000391945	NM_000400.3	484	Acg/Gcg					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37879888	37879888	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	130	581	1	ENST00000269571.5:c.2183C>T	p.Ser728Phe	p.S728F	ENST00000269571		728	tCt/tTt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16203095	16203095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	63	465	1	ENST00000375759.3:c.803C>T	p.Ser268Phe	p.S268F	ENST00000375759	NM_015001.2	268	tCc/tTc					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085773	16085773	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	274	567	0	ENST00000281043.3:c.949G>A	p.Glu317Lys	p.E317K	ENST00000281043	NM_005378.4	317	Gag/Aag					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25966832	25966832	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	142	502	0	ENST00000435504.4:c.2374G>A	p.Val792Ile	p.V792I	ENST00000435504		792	Gtc/Atc					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215646225	215646225	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	21	208	0	ENST00000260947.4:c.373G>A	p.Glu125Lys	p.E125K	ENST00000260947	NM_000465.2	125	Gaa/Aaa					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37053523	37053523	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	44	586	1	ENST00000231790.2:c.610G>A	p.Val204Ile	p.V204I	ENST00000231790	NM_000249.3	204	Gtt/Att					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52713670	52713670	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	58	556	0	ENST00000394830.3:c.58G>A	p.Asp20Asn	p.D20N	ENST00000394830	NM_018313.4	20	Gat/Aat					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189455618	189455618	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	82	517	0	ENST00000264731.3:c.152G>A	p.Ser51Asn	p.S51N	ENST00000264731	NM_003722.4	51	aGt/aAt					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189608648	189608648	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	46	520	0	ENST00000264731.3:c.1723C>T	p.Gln575Ter	p.Q575*	ENST00000264731	NM_003722.4	575	Cag/Tag					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247165	153247165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	41	444	0	ENST00000281708.4:c.1637C>T	p.Ser546Leu	p.S546L	ENST00000281708	NM_033632.3	546	tCa/tTa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187525019	187525019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	52	435	0	ENST00000441802.2:c.10661C>T	p.Ser3554Phe	p.S3554F	ENST00000441802	NM_005245.3	3554	tCt/tTt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187534380	187534380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	49	589	1	ENST00000441802.2:c.9346G>A	p.Glu3116Lys	p.E3116K	ENST00000441802	NM_005245.3	3116	Gaa/Aaa					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57754354	57754354	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	46	389	2	ENST00000274289.3:c.497C>T	p.Ser166Leu	p.S166L	ENST00000274289	NM_006622.3	166	tCa/tTa					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20488404	20488404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	47	658	1	ENST00000346618.3:c.1060G>A	p.Glu354Lys	p.E354K	ENST00000346618	NM_001949.4	354	Gag/Aag					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27778251	27778251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1557	158	1026	2	ENST00000369163.2:c.400G>A	p.Glu134Lys	p.E134K	ENST00000369163	NM_003536.2	134	Gag/Aag					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106524698	106524698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	75	375	0	ENST00000359195.3:c.2859G>A	p.Met953Ile	p.M953I	ENST00000359195	NM_002649.2	953	atG/atA					NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139820231	139820231	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144092600		P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	75	813	1	ENST00000247668.2:c.1384G>A	p.Asp462Asn	p.D462N	ENST00000247668	NM_021138.3	462	Gac/Aac					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123245044	123245044	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	38	426	0	ENST00000358487.5:c.2060G>A	p.Trp687Ter	p.W687*	ENST00000358487	NM_000141.4	687	tGg/tAg					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577290	64577290	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	111	701	0	ENST00000337652.1:c.292C>T	p.Arg98Ter	p.R98*	ENST00000337652	NM_130803.2	98	Cga/Tga					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108218086	108218086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	60	425	0	ENST00000278616.4:c.8665G>A	p.Asp2889Asn	p.D2889N	ENST00000278616	NM_000051.3	2889	Gat/Aat					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12038894	12038894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	131	505	2	ENST00000396373.4:c.1187G>A	p.Arg396Lys	p.R396K	ENST00000396373	NM_001987.4	396	aGa/aAa					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481620	56481620	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	115	695	0	ENST00000267101.3:c.655T>C	p.Phe219Leu	p.F219L	ENST00000267101	NM_001982.3	219	Ttt/Ctt					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26975751	26975751	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	45	540	0	ENST00000381527.3:c.1259C>T	p.Ser420Leu	p.S420L	ENST00000381527	NM_001260.1	420	tCa/tTa					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41961442	41961442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	97	839	1	ENST00000219905.7:c.350C>T	p.Ser117Leu	p.S117L	ENST00000219905	NM_001164273.1	117	tCa/tTa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2108813	2108813	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	66	646	0	ENST00000219476.3:c.914G>A	p.Gly305Glu	p.G305E	ENST00000219476	NM_000548.3	305	gGa/gAa					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14021950	14021950	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	34	573	0	ENST00000311895.7:c.650C>T	p.Ser217Phe	p.S217F	ENST00000311895	NM_005236.2	217	tCt/tTt					NEWRECORD																																																																									
RAD51D	0	MSKCC	GRCh37	17	33446619	33446619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	49	551	0	ENST00000335858.7:c.14G>A	p.Arg5Lys	p.R5K	ENST00000335858	NM_133629.2	5	aGg/aAg					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41246515	41246515	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	75	663	0	ENST00000357654.3:c.1033G>C	p.Asp345His	p.D345H	ENST00000357654	NM_007294.3	345	Gat/Cat					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554172	63554172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	69	594	0	ENST00000307078.5:c.567G>A	p.Met189Ile	p.M189I	ENST00000307078	NM_004655.3	189	atG/atA					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591826	48591826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	60	641	0	ENST00000342988.3:c.989A>G	p.Glu330Gly	p.E330G	ENST00000342988	NM_005359.5	330	gAa/gGa					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15366186	15366186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	101	755	0	ENST00000263377.2:c.1969G>A	p.Glu657Lys	p.E657K	ENST00000263377	NM_058243.2	657	Gag/Aag					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33793002	33793002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	15	86	0	ENST00000498907.2:c.319G>C	p.Asp107His	p.D107H	ENST00000498907	NM_004364.3	107	Gac/Cac					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44950005	44950005	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	82	381	0	ENST00000377967.4:c.3774G>A	p.Trp1258Ter	p.W1258*	ENST00000377967	NM_021140.2	1258	tgG/tgA					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247213	153247233	+	inframe_deletion	In_Frame_Del	DEL	GTCTCTGGATCCCACACCTTT	GTCTCTGGATCCCACACCTTT	-			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	66	623	1	ENST00000281708.4:c.1569_1589del	p.Lys524_Thr530del	p.K524_T530del	ENST00000281708	NM_033632.3	523	gtAAAGGTGTGGGATCCAGAGACt/gtt					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577494	64577513	+	frameshift_variant	Frame_Shift_Del	DEL	CTCGGCCCAGCTCGGCAGCA	CTCGGCCCAGCTCGGCAGCA	-			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	43	374	0	ENST00000337652.1:c.69_88del	p.Phe23LeufsTer87	p.F23Lfs*87	ENST00000337652	NM_130803.2	23	ttTGCTGCCGAGCTGGGCCGAGag/ttag					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138665051	138665074	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCTCCGGCCCCGAAGAGCCCCT	CGCCTCCGGCCCCGAAGAGCCCCT	AG			P-0005087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	30	83	0	ENST00000330315.3:c.491_514delinsCT	p.Lys164ThrfsTer100	p.K164Tfs*100	ENST00000330315	NM_023067.3	164	aAGGGGCTCTTCGGGGCCGGAGGCGcc/aCTcc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	131	338	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259389	89259389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	172	489	0	ENST00000336596.2:c.533G>A	p.Gly178Glu	p.G178E	ENST00000336596	NM_005233.5	178	gGa/gAa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11291050	11291050	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	172	397	0	ENST00000361445.4:c.2711G>T	p.Gly904Val	p.G904V	ENST00000361445	NM_004958.3	904	gGc/gTc					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111886062	111886062	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs183875955		P-0009462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	93	523	0	ENST00000341259.2:c.1684C>T	p.Arg562Trp	p.R562W	ENST00000341259	NM_005475.2	562	Cgg/Tgg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220706	1220706	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009462-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	154	308	0	ENST00000326873.7:c.727del	p.Val243SerfsTer44	p.V243Sfs*44	ENST00000326873	NM_000455.4	242	Ggg/gg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88472559	88472559	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	149	587	1	ENST00000360948.2:c.1996G>T	p.Gly666Cys	p.G666C	ENST00000360948	NM_001012338.2	666	Ggt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	114	483	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602354	10602354	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	264	585	0	ENST00000171111.5:c.1224del	p.Met409Ter	p.M409*	ENST00000171111	NM_203500.1	408	ccC/cc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212285249	212285249	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	80	398	1	ENST00000342788.4:c.3052G>T	p.Asp1018Tyr	p.D1018Y	ENST00000342788	NM_005235.2	1018	Gat/Tat					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38950233	38950233	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	21	277	0	ENST00000357387.3:c.3717G>C	p.Glu1239Asp	p.E1239D	ENST00000357387	NM_152756.3	1239	gaG/gaC					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38957801	38957801	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	56	330	0	ENST00000357387.3:c.2452C>G	p.Leu818Val	p.L818V	ENST00000357387	NM_152756.3	818	Ctg/Gtg					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86629138	86629138	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	59	329	0	ENST00000274376.6:c.883G>A	p.Asp295Asn	p.D295N	ENST00000274376	NM_002890.2	295	Gac/Aac					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158692	26158692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	10	48	0	ENST00000289316.2:c.295G>A	p.Val99Met	p.V99M	ENST00000289316	NM_138720.2	99	Gtg/Atg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878241	151878241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	91	394	1	ENST00000262189.6:c.6704G>A	p.Arg2235Lys	p.R2235K	ENST00000262189	NM_170606.2	2235	aGg/aAg					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28608325	28608325	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	52	389	0	ENST00000241453.7:c.1731G>C	p.Gln577His	p.Q577H	ENST00000241453	NM_004119.2	577	caG/caC					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89851291	89851291	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	315	612	0	ENST00000389301.3:c.1441G>T	p.Val481Leu	p.V481L	ENST00000389301	NM_000135.2	481	Gtg/Ttg					NEWRECORD																																																																									
MEF2B	0	MSKCC	GRCh37	19	19257435	19257435	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	184	589	0	ENST00000162023.5:c.698A>T	p.Gln233Leu	p.Q233L	ENST00000162023		233	cAg/cTg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142272078	142272078	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	46	262	0	ENST00000350721.4:c.2796del	p.Ile933SerfsTer6	p.I933Sfs*6	ENST00000350721	NM_001184.3	932	ccC/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578471	7578471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007029-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	267	444	0	ENST00000269305.4:c.459delC	p.Gly154AlafsTer16	p.G154Afs*16	ENST00000269305	NM_001126112.2	153	ccC/cc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	72	418	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	139	381	0	ENST00000269305.4:c.380C>A	p.Ser127Tyr	p.S127Y	ENST00000269305	NM_001126112.2	127	tCc/tAc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117650522	117650522	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	30	628	1	ENST00000368508.3:c.5336G>T	p.Cys1779Phe	p.C1779F	ENST00000368508	NM_002944.2	1779	tGt/tTt					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63850688	63850688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	152	455	2	ENST00000279873.7:c.1466C>T	p.Pro489Leu	p.P489L	ENST00000279873	NM_032199.2	489	cCa/cTa					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	34	348	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0005796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	22	543	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0005796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	19	501	2	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98238416	98238416	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150284288		P-0005796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	40	555	1	ENST00000331920.6:c.1628G>A	p.Arg543His	p.R543H	ENST00000331920	NM_000264.3	543	cGc/cAc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53226130	53226130	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005796-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	42	323	0	ENST00000375401.3:c.2719A>T	p.Arg907Trp	p.R907W	ENST00000375401	NM_004187.3	907	Agg/Tgg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	299	339	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	193	477	0	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	126	357	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434990	49434990	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	110	213	0	ENST00000301067.7:c.6563G>A	p.Arg2188His	p.R2188H	ENST00000301067	NM_003482.3	2188	cGc/cAc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242466	55242480	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	CCT			P-0005974-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	113	380	0	ENST00000275493.2:c.2236_2250delinsCCT	p.Glu746_Ala750delinsPro	p.E746_A750delinsP	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/CCT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	131	334	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0009275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	106	312	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220400	1220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	135	398	0	ENST00000326873.7:c.493G>T	p.Glu165Ter	p.E165*	ENST00000326873	NM_000455.4	165	Gag/Tag					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9775790	9775790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	97	207	0	ENST00000377346.4:c.333G>T	p.Lys111Asn	p.K111N	ENST00000377346	NM_005026.3	111	aaG/aaT					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16254960	16254960	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	79	179	0	ENST00000375759.3:c.2225C>T	p.Ser742Phe	p.S742F	ENST00000375759	NM_015001.2	742	tCt/tTt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108164040	108164040	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	31	159	1	ENST00000278616.4:c.4612G>T	p.Val1538Leu	p.V1538L	ENST00000278616	NM_000051.3	1538	Gta/Tta					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44936024	44936024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009275-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	112	484	0	ENST00000377967.4:c.2785C>T	p.Pro929Ser	p.P929S	ENST00000377967	NM_021140.2	929	Cct/Tct					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	312	507	1	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	401442	401442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007313-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	21	157	0	ENST00000380956.4:c.764G>A	p.Cys255Tyr	p.C255Y	ENST00000380956	NM_001195286.1	255	tGc/tAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	29	541	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47144893	47144893	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	136	619	0	ENST00000409792.3:c.4860A>T	p.Lys1620Asn	p.K1620N	ENST00000409792	NM_014159.6	1620	aaA/aaT					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436617	52436617	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0006547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	289	657	0	ENST00000460680.1:c.2056+1G>C		p.X686_splice	ENST00000460680	NM_004656.3	686						NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32930726	32930726	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	152	541	0	ENST00000380152.3:c.7597T>C	p.Ser2533Pro	p.S2533P	ENST00000380152		2533	Tct/Cct					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47088090	47088102	+	frameshift_variant	Frame_Shift_Del	DEL	GAAGACTTGGCTG	GAAGACTTGGCTG	-			P-0006547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	85	590	0	ENST00000409792.3:c.6973_6985del	p.Gln2325SerfsTer24	p.Q2325Sfs*24	ENST00000409792	NM_014159.6	2325	CAGCCAAGTCTTCag/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	368	531	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16082389	16082389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	32	519	0	ENST00000281043.3:c.203C>G	p.Ala68Gly	p.A68G	ENST00000281043	NM_005378.4	68	gCg/gGg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425256	49425256	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	185	571	0	ENST00000301067.7:c.13232C>G	p.Ser4411Cys	p.S4411C	ENST00000301067	NM_003482.3	4411	tCc/tGc					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89341311	89341311	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	28	202	0	ENST00000301030.4:c.7624G>T	p.Ala2542Ser	p.A2542S	ENST00000301030	NM_001256183.1	2542	Gcc/Tcc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49419980	49420007	+	frameshift_variant	Frame_Shift_Del	DEL	CAGTGAAGACCAGGTCCTCCAGGCCCTG	CAGTGAAGACCAGGTCCTCCAGGCCCTG	-			P-0005274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	209	507	0	ENST00000301067.7:c.15742_15769del	p.Gln5248ThrfsTer18	p.Q5248Tfs*18	ENST00000301067	NM_003482.3	5248	CAGGGCCTGGAGGACCTGGTCTTCACTGac/ac					NEWRECORD																																																																									
DNAJB1	0	MSKCC	GRCh37	19	14627602	14627604	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-			P-0005274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	153	562	0	ENST00000254322.2:c.466_468del	p.Ala156del	p.A156del	ENST00000254322	NM_006145.1	156	GCC/-					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0006740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	194	479	1	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103524660	103524660	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	63	410	0	ENST00000355739.4:c.2791G>T	p.Ala931Ser	p.A931S	ENST00000355739	NM_000123.3	931	Gct/Tct					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1226540	1226540	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	102	427	0	ENST00000326873.7:c.1196A>C	p.Gln399Pro	p.Q399P	ENST00000326873	NM_000455.4	399	cAg/cCg					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36012726	36012726	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006740-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	244	110	0	ENST00000358208.4:c.170C>T	p.Ala57Val	p.A57V	ENST00000358208		57	gCg/gTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005065-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			188	635	534	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204518464	204518464	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005065-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			730	144	429	0	ENST00000367182.3:c.1127C>T	p.Ala376Val	p.A376V	ENST00000367182	NM_001278516.1	376	gCg/gTg					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153244137	153244137	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005065-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			295	96	448	0	ENST00000281708.4:c.2020C>T	p.Arg674Trp	p.R674W	ENST00000281708	NM_033632.3	674	Cgg/Tgg					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138409841	138409841	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0005065-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			486	124	387	0	ENST00000289153.2:c.2036+1G>C		p.X679_splice	ENST00000289153	NM_006219.2	679						NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49940111	49940111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005065-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			576	57	546	0	ENST00000296474.3:c.932C>A	p.Ala311Asp	p.A311D	ENST00000296474	NM_002447.2	311	gCc/gAc					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851908	63851908	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005065-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			462	70	296	0	ENST00000279873.7:c.2686G>T	p.Ala896Ser	p.A896S	ENST00000279873	NM_032199.2	896	Gca/Tca					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64127994	64127994	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005065-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			459	47	335	0	ENST00000334205.4:c.392A>G	p.Gln131Arg	p.Q131R	ENST00000334205	NM_003942.2	131	cAg/cGg					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102869492	102869492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005065-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			711	72	346	0	ENST00000307046.8:c.149C>G	p.Pro50Arg	p.P50R	ENST00000307046	NM_001111285.1	50	cCg/cGg					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87636138	87636174	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCTCATCCTATCTTTGATCTCCATCCAGGTGATAGA	GTCTCATCCTATCTTTGATCTCCATCCAGGTGATAGA	-			P-0005065-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			264	50	249	0	ENST00000277120.3:c.2332-27_2341del		p.X778_splice	ENST00000277120		778						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	68	305	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	223	275	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	70	294	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593505	48593505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	74	282	0	ENST00000342988.3:c.1256G>T	p.Gly419Val	p.G419V	ENST00000342988	NM_005359.5	419	gGg/gTg					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89445111	89445111	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	36	244	0	ENST00000336596.2:c.1431G>T	p.Lys477Asn	p.K477N	ENST00000336596	NM_005233.5	477	aaG/aaT					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356149	66356149	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs142589245		P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	157	333	0	ENST00000273854.3:c.1348T>G	p.Leu450Val	p.L450V	ENST00000273854	NM_004439.5	450	Ttg/Gtg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40738998	40738998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	269	276	1	ENST00000373198.4:c.3286G>T	p.Ala1096Ser	p.A1096S	ENST00000373198	NM_133170.3	1096	Gct/Tct					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175749	112175749	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0004803-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	118	281	0	ENST00000257430.4:c.4458del	p.Asp1486GlufsTer21	p.D1486Efs*21	ENST00000257430	NM_000038.5	1486	gaT/ga					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49413010	49413010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000076-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1400	152	323	3	ENST00000418115.1:c.13C>T	p.Arg5Trp	p.R5W	ENST00000418115	NM_001664.2	5	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578527	7578527	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0000076-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			1094	140	267	0	ENST00000269305.4:c.403T>G	p.Cys135Gly	p.C135G	ENST00000269305	NM_001126112.2	135	Tgc/Ggc					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54945275	54945275	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000076-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			763	57	207	0	ENST00000312783.6:c.1151C>G	p.Thr384Arg	p.T384R	ENST00000312783	NM_198436.1	384	aCa/aGa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	161	198	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115256550	115256550	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	123	352	0	ENST00000369535.4:c.161A>G	p.Asp54Gly	p.D54G	ENST00000369535	NM_002524.4	54	gAc/gGc					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215593545	215593545	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	207	305	0	ENST00000260947.4:c.2189A>T	p.Gln730Leu	p.Q730L	ENST00000260947	NM_000465.2	730	cAg/cTg					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95577791	95577791	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	220	481	1	ENST00000343455.3:c.2119G>T	p.Glu707Ter	p.E707*	ENST00000343455	NM_177438.2	707	Gaa/Taa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29654569	29654569	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1316	218	366	0	ENST00000358273.4:c.5321G>A	p.Gly1774Glu	p.G1774E	ENST00000358273	NM_001042492.2	1774	gGg/gAg					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618489	37618489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3118	1448	412	0	ENST00000447079.4:c.165G>C	p.Leu55Phe	p.L55F	ENST00000447079	NM_015083.1	55	ttG/ttC					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3817802	3817809	+	frameshift_variant	Frame_Shift_Del	DEL	CTTTCACT	CTTTCACT	-			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1574	191	510	1	ENST00000262367.5:c.3162_3169del	p.Glu1054AspfsTer4	p.E1054Dfs*4	ENST00000262367	NM_004380.2	1054	gaAGTGAAAGta/gata					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579438	7579439	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0007045-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	424	391	0	ENST00000269305.4:c.248_249del	p.Ala83GlyfsTer65	p.A83Gfs*65	ENST00000269305	NM_001126112.2	83	gCG/g					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	418	393	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198265540	198265540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1181	95	518	1	ENST00000335508.6:c.2617G>A	p.Glu873Lys	p.E873K	ENST00000335508	NM_012433.2	873	Gag/Aag					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198299708	198299708	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	123	280	0	ENST00000335508.6:c.16A>G	p.Lys6Glu	p.K6E	ENST00000335508	NM_012433.2	6	Aag/Gag					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	375	709	0	ENST00000263967.3:c.331A>C	p.Lys111Gln	p.K111Q	ENST00000263967	NM_006218.2	111	Aag/Cag					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158437	26158437	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	265	358	0	ENST00000289316.2:c.40G>T	p.Gly14Cys	p.G14C	ENST00000289316	NM_138720.2	14	Ggc/Tgc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2954919	2954919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	65	438	0	ENST00000396946.4:c.2791G>T	p.Ala931Ser	p.A931S	ENST00000396946	NM_032415.4	931	Gcc/Tcc					NEWRECORD																																																																									
CDK6	0	MSKCC	GRCh37	7	92244573	92244573	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	236	268	0	ENST00000265734.4:c.862A>G	p.Arg288Gly	p.R288G	ENST00000265734	NM_001259.6	288	Aga/Gga					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508034	106508034	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	58	201	0	ENST00000359195.3:c.28G>T	p.Val10Leu	p.V10L	ENST00000359195	NM_002649.2	10	Gtg/Ttg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509955	106509955	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	130	393	1	ENST00000359195.3:c.1949G>T	p.Ser650Ile	p.S650I	ENST00000359195	NM_002649.2	650	aGc/aTc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8340384	8340384	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	158	428	0	ENST00000356435.5:c.5212A>T	p.Thr1738Ser	p.T1738S	ENST00000356435		1738	Acc/Tcc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115109998	115109998	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	66	261	0	ENST00000257566.3:c.1880C>G	p.Pro627Arg	p.P627R	ENST00000257566	NM_016569.3	627	cCc/cGc					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7166270	7166270	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	250	484	0	ENST00000302850.5:c.1756T>G	p.Trp586Gly	p.W586G	ENST00000302850	NM_000208.2	586	Tgg/Ggg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11144003	11144003	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	45	338	0	ENST00000344626.4:c.3584A>T	p.Gln1195Leu	p.Q1195L	ENST00000344626	NM_003072.3	1195	cAg/cTg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045872	47045872	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	203	217	0	ENST00000329236.7:c.2434-1G>C		p.X812_splice	ENST00000329236	NM_001204466.1	812						NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32972540	32972544	+	frameshift_variant	Frame_Shift_Del	DEL	CATTT	CATTT	-			P-0007916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	161	432	0	ENST00000380152.3:c.9892_9896del	p.Phe3298AlafsTer27	p.F3298Afs*27	ENST00000380152		3297	gCATTT/g					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120284	94120284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	441	747	1	ENST00000369303.4:c.767G>T	p.Trp256Leu	p.W256L	ENST00000369303	NM_004440.3	256	tGg/tTg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55221776	55221776	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1462	151	678	0	ENST00000275493.2:c.820A>G	p.Thr274Ala	p.T274A	ENST00000275493	NM_005228.3	274	Acg/Gcg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139413065	139413066	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	140	493	0	ENST00000277541.6:c.1076_1077delinsTT	p.Cys359Phe	p.C359F	ENST00000277541	NM_017617.3	359	tGC/tTT					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	164	473	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	412	452	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121435425	121435425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	123	459	1	ENST00000257555.6:c.1458G>T	p.Gln486His	p.Q486H	ENST00000257555		486	caG/caT					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858337	9858337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	90	354	0	ENST00000330684.3:c.3064C>T	p.Arg1022Cys	p.R1022C	ENST00000330684	NM_001134407.1	1022	Cgc/Tgc					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39584352	39584352	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	201	420	0	ENST00000262039.4:c.1017G>T	p.Trp339Cys	p.W339C	ENST00000262039	NM_002647.2	339	tgG/tgT					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610427	10610427	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	534	489	0	ENST00000171111.5:c.283del	p.Ala95ProfsTer62	p.A95Pfs*62	ENST00000171111	NM_203500.1	95	Gcc/cc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16203041	16203041	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	358	352	0	ENST00000375759.3:c.749C>G	p.Ser250Cys	p.S250C	ENST00000375759	NM_015001.2	250	tCt/tGt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27059267	27059267	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	362	428	0	ENST00000324856.7:c.1904G>C	p.Arg635Thr	p.R635T	ENST00000324856	NM_006015.4	635	aGa/aCa					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78429791	78429791	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	58	503	0	ENST00000370768.2:c.997C>G	p.Gln333Glu	p.Q333E	ENST00000370768	NM_003902.3	333	Caa/Gaa					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48010560	48010560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	74	190	0	ENST00000234420.5:c.188C>G	p.Ser63Cys	p.S63C	ENST00000234420	NM_000179.2	63	tCc/tGc					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61149432	61149432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	410	482	1	ENST00000295025.8:c.1622C>T	p.Ser541Phe	p.S541F	ENST00000295025	NM_002908.2	541	tCt/tTt					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225376227	225376227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	493	562	1	ENST00000264414.4:c.727G>A	p.Glu243Lys	p.E243K	ENST00000264414	NM_003590.4	243	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	222	272	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55155200	55155200	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	427	455	0	ENST00000257290.5:c.2799G>A	p.Trp933Ter	p.W933*	ENST00000257290	NM_006206.4	933	tgG/tgA					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55155213	55155213	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	477	478	0	ENST00000257290.5:c.2812G>C	p.Glu938Gln	p.E938Q	ENST00000257290	NM_006206.4	938	Gag/Cag					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55573432	55573432	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	280	344	0	ENST00000288135.5:c.1094C>T	p.Ser365Phe	p.S365F	ENST00000288135	NM_000222.2	365	tCt/tTt					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158422	26158422	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	442	414	0	ENST00000289316.2:c.25C>G	p.Pro9Ala	p.P9A	ENST00000289316	NM_138720.2	9	Cct/Gct					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287194	33287194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	529	472	0	ENST00000374542.5:c.1903G>C	p.Glu635Gln	p.E635Q	ENST00000374542	NM_001141970.1	635	Gag/Cag					NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	450	333	0	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116398618	116398618	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	458	488	2	ENST00000397752.3:c.2208C>A	p.Phe736Leu	p.F736L	ENST00000397752	NM_000245.2	736	ttC/ttA					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117864904	117864904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1216	468	603	0	ENST00000297338.2:c.1205G>C	p.Arg402Thr	p.R402T	ENST00000297338	NM_006265.2	402	aGa/aCa					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865668	57865668	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	792	789	0	ENST00000228682.2:c.3145T>A	p.Phe1049Ile	p.F1049I	ENST00000228682	NM_005269.2	1049	Ttt/Att					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28623911	28623911	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	152	273	0	ENST00000241453.7:c.743A>T	p.Asp248Val	p.D248V	ENST00000241453	NM_004119.2	248	gAt/gTt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32944674	32944674	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	479	477	0	ENST00000380152.3:c.8467C>T	p.Gln2823Ter	p.Q2823*	ENST00000380152		2823	Caa/Taa					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3831263	3831263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	453	486	0	ENST00000262367.5:c.1618C>T	p.Gln540Ter	p.Q540*	ENST00000262367	NM_004380.2	540	Cag/Tag					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14041737	14041737	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	567	521	0	ENST00000311895.7:c.2284G>C	p.Asp762His	p.D762H	ENST00000311895	NM_005236.2	762	Gac/Cac					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67655488	67655488	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	346	394	0	ENST00000264010.4:c.1351G>C	p.Asp451His	p.D451H	ENST00000264010	NM_006565.3	451	Gat/Cat					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68867305	68867305	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	520	461	0	ENST00000261769.5:c.2552C>G	p.Ser851Ter	p.S851*	ENST00000261769	NM_004360.3	851	tCa/tGa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29657384	29657384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	510	598	0	ENST00000358273.4:c.5680G>C	p.Glu1894Gln	p.E1894Q	ENST00000358273	NM_001042492.2	1894	Gag/Cag					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56363605	56363605	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	199	229	0	ENST00000348428.3:c.384G>C	p.Lys128Asn	p.K128N	ENST00000348428	NM_006785.3	128	aaG/aaC					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1627414	1627414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	749	578	0	ENST00000344749.5:c.310G>A	p.Glu104Lys	p.E104K	ENST00000344749	NM_001136139.2	104	Gag/Aag					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50920518	50920518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	503	445	0	ENST00000440232.2:c.3210C>G	p.Ile1070Met	p.I1070M	ENST00000440232	NM_002691.3	1070	atC/atG					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	75	641	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149497358	149497358	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs35731372		P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	108	540	0	ENST00000261799.4:c.2960G>A	p.Arg987Gln	p.R987Q	ENST00000261799	NM_002609.3	987	cGg/cAg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878948	151878948	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	86	482	0	ENST00000262189.6:c.5997A>G	p.Ile1999Met	p.I1999M	ENST00000262189	NM_170606.2	1999	atA/atG					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121431971	121431971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	103	493	0	ENST00000257555.6:c.718G>A	p.Glu240Lys	p.E240K	ENST00000257555		240	Gaa/Aaa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916266	9916266	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	117	447	0	ENST00000330684.3:c.2023G>T	p.Asp675Tyr	p.D675Y	ENST00000330684	NM_001134407.1	675	Gac/Tac					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868282	37868282	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	66	511	1	ENST00000269571.5:c.1003A>T	p.Ser335Cys	p.S335C	ENST00000269571		335	Agc/Tgc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1222987	1222987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	72	338	0	ENST00000326873.7:c.924G>T	p.Trp308Cys	p.W308C	ENST00000326873	NM_000455.4	308	tgG/tgT					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602370	10602370	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006954-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	143	534	0	ENST00000171111.5:c.1208G>A	p.Trp403Ter	p.W403*	ENST00000171111	NM_203500.1	403	tGg/tAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	66	456	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099108	27099108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	166	420	0	ENST00000324856.7:c.3524C>A	p.Pro1175Gln	p.P1175Q	ENST00000324856	NM_006015.4	1175	cCa/cAa					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227661867	227661867	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	93	213	2	ENST00000305123.5:c.1588A>G	p.Thr530Ala	p.T530A	ENST00000305123	NM_005544.2	530	Aca/Gca					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55979471	55979471	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	230	328	0	ENST00000263923.4:c.976G>T	p.Glu326Ter	p.E326*	ENST00000263923	NM_002253.2	326	Gaa/Taa					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176618958	176618958	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	193	502	2	ENST00000439151.2:c.1001G>T	p.Arg334Leu	p.R334L	ENST00000439151	NM_022455.4	334	cGc/cTc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8517998	8517998	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	125	462	0	ENST00000356435.5:c.1393A>G	p.Asn465Asp	p.N465D	ENST00000356435		465	Aac/Gac					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8527350	8527350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	80	293	0	ENST00000356435.5:c.545C>A	p.Ser182Tyr	p.S182Y	ENST00000356435		182	tCt/tAt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	91	198	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	91	198	2	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98218566	98218566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	262	348	0	ENST00000331920.6:c.3298G>T	p.Val1100Phe	p.V1100F	ENST00000331920	NM_000264.3	1100	Gtt/Ttt					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944914	31944914	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	131	261	0	ENST00000340398.3:c.187C>G	p.Arg63Gly	p.R63G	ENST00000340398	NM_001013699.2	63	Cgg/Ggg					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57858999	57859000	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	413	614	0	ENST00000228682.2:c.495_496delinsGA	p.Ile165_Pro166delinsMetThr	p.I165_P166delinsMT	ENST00000228682	NM_005269.2	165	atCCca/atGAca					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115120828	115120828	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	268	302	0	ENST00000257566.3:c.178C>A	p.Leu60Met	p.L60M	ENST00000257566	NM_016569.3	60	Ctg/Atg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133235975	133235975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	399	412	1	ENST00000320574.5:c.3181G>A	p.Ala1061Thr	p.A1061T	ENST00000320574	NM_006231.2	1061	Gcc/Acc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914274	32914274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	198	729	0	ENST00000380152.3:c.5782G>C	p.Glu1928Gln	p.E1928Q	ENST00000380152		1928	Gaa/Caa					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103515386	103515386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	208	320	0	ENST00000355739.4:c.1887G>T	p.Gln629His	p.Q629H	ENST00000355739	NM_000123.3	629	caG/caT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	343	429	1	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5212208	5212208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	322	367	0	ENST00000357368.4:c.4823G>C	p.Arg1608Pro	p.R1608P	ENST00000357368	NM_002850.3	1608	cGg/cCg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	42	269	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	108	404	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	50	293	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	101	349	0	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	175956132	175956132	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	78	342	0	ENST00000367669.3:c.2080G>C	p.Asp694His	p.D694H	ENST00000367669	NM_022457.5	694	Gat/Cat					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67670719	67670719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	124	412	0	ENST00000264010.4:c.1964C>A	p.Pro655His	p.P655H	ENST00000264010	NM_006565.3	655	cCc/cAc					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15366129	15366129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	101	329	0	ENST00000263377.2:c.2026C>T	p.Arg676Trp	p.R676W	ENST00000263377	NM_058243.2	676	Cgg/Tgg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70349925	70349925	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	124	471	0	ENST00000374080.3:c.3908A>G	p.Asp1303Gly	p.D1303G	ENST00000374080		1303	gAc/gGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	187	209	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	123	189	0	ENST00000269305.4:c.746G>T	p.Arg249Met	p.R249M	ENST00000269305	NM_001126112.2	249	aGg/aTg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106523560	106523560	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	110	206	0	ENST00000359195.3:c.2712T>G	p.Asp904Glu	p.D904E	ENST00000359195	NM_002649.2	904	gaT/gaG					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56872929	56872929	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0008157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	110	432	0	ENST00000308159.5:c.2084T>A	p.Leu695Ter	p.L695*	ENST00000308159	NM_014669.4	695	tTg/tAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41420093	41420093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	43	125	0	ENST00000373198.4:c.228G>A	p.Met76Ile	p.M76I	ENST00000373198	NM_133170.3	76	atG/atA					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0006210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1311	202	587	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180057627	180057627	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1295	148	787	0	ENST00000261937.6:c.328G>A	p.Val110Ile	p.V110I	ENST00000261937	NM_182925.4	110	Gtc/Atc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0006210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	65	316	0	ENST00000269305.4:c.97-1G>C		p.X33_splice	ENST00000269305	NM_001126112.2	33						NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70360597	70360597	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	112	503	0	ENST00000374080.3:c.6157C>T	p.Gln2053Ter	p.Q2053*	ENST00000374080		2053	Cag/Tag					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	130	475	1	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52443610	52443610	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	252	372	0	ENST00000460680.1:c.82C>T	p.Gln28Ter	p.Q28*	ENST00000460680	NM_004656.3	28	Caa/Taa					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95595857	95595857	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0008016-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	87	494	0	ENST00000343455.3:c.686T>A	p.Ile229Asn	p.I229N	ENST00000343455	NM_177438.2	229	aTt/aAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	44	334	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	12	336	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	194	358	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604682	48604684	+	inframe_deletion	In_Frame_Del	DEL	AGG	AGG	-			P-0004759-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	336	402	0	ENST00000342988.3:c.1505_1507del	p.Arg502del	p.R502del	ENST00000342988	NM_005359.5	502	AGG/-					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573505	48573506	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	55	421	0	ENST00000342988.3:c.94_95delAG	p.Ser32Ter	p.S32*	ENST00000342988	NM_005359.5	30	gGA/g					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66535450	66535450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	14	136	0	ENST00000273854.3:c.11C>T	p.Ser4Leu	p.S4L	ENST00000273854	NM_004439.5	4	tCg/tTg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11297958	11297958	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	39	358	0	ENST00000361445.4:c.2150G>A	p.Arg717Gln	p.R717Q	ENST00000361445	NM_004958.3	717	cGa/cAa					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45797845	45797845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	49	358	0	ENST00000372115.3:c.884G>A	p.Arg295His	p.R295H	ENST00000372115	NM_001048171.1	295	cGc/cAc					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128044408	128044408	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	55	426	0	ENST00000285398.2:c.1213G>A	p.Val405Ile	p.V405I	ENST00000285398	NM_000122.1	405	Gtt/Att					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43606743	43606743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	46	398	0	ENST00000355710.3:c.1352C>T	p.Thr451Met	p.T451M	ENST00000355710	NM_020975.4	451	aCg/aTg					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562996	21562996	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	33	342	0	ENST00000382592.4:c.923C>T	p.Ala308Val	p.A308V	ENST00000382592	NM_014572.2	308	gCc/gTc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191513	10191513	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	94	503	0	ENST00000256474.2:c.506T>C	p.Leu169Pro	p.L169P	ENST00000256474	NM_000551.3	169	cTa/cCa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952086	178952086	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0005271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	64	562	0	ENST00000263967.3:c.3141T>G	p.His1047Gln	p.H1047Q	ENST00000263967	NM_006218.2	1047	caT/caG					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713816	30713816	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	92	397	0	ENST00000359013.4:c.1216A>T	p.Lys406Ter	p.K406*	ENST00000359013	NM_001024847.2	406	Aag/Tag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125873	47125873	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0005271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	28	162	0	ENST00000409792.3:c.5398-1G>C		p.X1800_splice	ENST00000409792	NM_014159.6	1800						NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89653865	89653865	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0005271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	114	393	0	ENST00000371953.3:c.163A>T	p.Arg55Trp	p.R55W	ENST00000371953	NM_000314.4	55	Agg/Tgg					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061243	38061243	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	79	498	0	ENST00000250448.2:c.746A>G	p.Asp249Gly	p.D249G	ENST00000250448	NM_004496.3	249	gAc/gGc					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2225339	2225339	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	69	575	0	ENST00000326181.6:c.1424T>C	p.Ile475Thr	p.I475T	ENST00000326181	NM_032271.2	475	aTc/aCc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52595873	52595873	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	132	628	0	ENST00000394830.3:c.4042del	p.Gln1348AsnfsTer32	p.Q1348Nfs*32	ENST00000394830	NM_018313.4	1348	Caa/aa					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266596	198266596	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	28	388	4	ENST00000335508.6:c.2240T>G	p.Leu747Trp	p.L747W	ENST00000335508	NM_012433.2	747	tTg/tGg					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150001148	150001148	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	40	640	0	ENST00000253339.5:c.2456T>G	p.Val819Gly	p.V819G	ENST00000253339		819	gTt/gGt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	128	126	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	161	319	2	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577535	7577535	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	237	209	2	ENST00000269305.4:c.746G>C	p.Arg249Thr	p.R249T	ENST00000269305	NM_001126112.2	249	aGg/aCg					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58145430	58145430	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	251	202	1	ENST00000257904.6:c.71G>T	p.Arg24Leu	p.R24L	ENST00000257904	NM_000075.3	24	cGt/cTt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70344011	70344011	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0007578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	412	247	1	ENST00000374080.3:c.1747G>T	p.Asp583Tyr	p.D583Y	ENST00000374080		583	Gac/Tac					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8436684	8436684	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	498	257	0	ENST00000356435.5:c.3994G>T	p.Ala1332Ser	p.A1332S	ENST00000356435		1332	Gct/Tct					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431339	49431339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	98	85	0	ENST00000301067.7:c.9800C>T	p.Ser3267Leu	p.S3267L	ENST00000301067	NM_003482.3	3267	tCa/tTa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9862746	9862746	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	64	233	0	ENST00000330684.3:c.2557T>A	p.Cys853Ser	p.C853S	ENST00000330684	NM_001134407.1	853	Tgc/Agc					NEWRECORD																																																																									
RAD51D	0	MSKCC	GRCh37	17	33430271	33430271	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0007578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	356	345	0	ENST00000335858.7:c.402+2T>C		p.X134_splice	ENST00000335858	NM_133629.2	134						NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207181	1207181	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	251	208	0	ENST00000326873.7:c.269A>T	p.Asn90Ile	p.N90I	ENST00000326873	NM_000455.4	90	aAc/aTc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	49	414	0	ENST00000263967.3:c.3132T>A	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaA					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430906	181430906	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	23	536	1	ENST00000325404.1:c.758C>T	p.Pro253Leu	p.P253L	ENST00000325404	NM_003106.3	253	cCt/cTt					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131923712	131923712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	16	443	0	ENST00000265335.6:c.982G>A	p.Glu328Lys	p.E328K	ENST00000265335		328	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	36	443	0	ENST00000269305.4:c.695T>G	p.Ile232Ser	p.I232S	ENST00000269305	NM_001126112.2	232	aTc/aGc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	195	356	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692901	89692901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	285	348	0	ENST00000371953.3:c.385G>A	p.Gly129Arg	p.G129R	ENST00000371953	NM_000314.4	129	Gga/Aga					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599334	55599334	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	420	574	0	ENST00000288135.5:c.2460T>G	p.Asp820Glu	p.D820E	ENST00000288135	NM_000222.2	820	gaT/gaG					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041029	42041029	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	314	1093	1	ENST00000219905.7:c.5407C>T	p.His1803Tyr	p.H1803Y	ENST00000219905	NM_001164273.1	1803	Cac/Tac					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593607	55593615	+	inframe_deletion	In_Frame_Del	DEL	AGGTTGTTG	AGGTTGTTG	-			P-0006104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	426	704	0	ENST00000288135.5:c.1676_1684del	p.Val559_Glu561del	p.V559_E561del	ENST00000288135	NM_000222.2	558	aAGGTTGTTGag/aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	882	698	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72400966	72400966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	244	1001	0	ENST00000357731.5:c.205G>A	p.Gly69Ser	p.G69S	ENST00000357731	NM_173808.2	69	Ggt/Agt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76763965	76763965	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	102	864	0	ENST00000373344.5:c.7343C>A	p.Pro2448His	p.P2448H	ENST00000373344	NM_000489.3	2448	cCt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	158	326	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241682991	241682991	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	120	221	0	ENST00000366560.3:c.32C>T	p.Ser11Leu	p.S11L	ENST00000366560	NM_000143.3	11	tCg/tTg					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521676	89521676	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	113	346	0	ENST00000336596.2:c.2753A>T	p.Asp918Val	p.D918V	ENST00000336596	NM_005233.5	918	gAc/gTc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89528639	89528639	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	68	252	0	ENST00000336596.2:c.2939C>A	p.Pro980Gln	p.P980Q	ENST00000336596	NM_005233.5	980	cCa/cAa					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189455614	189455614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	102	331	0	ENST00000264731.3:c.148C>T	p.Leu50Phe	p.L50F	ENST00000264731	NM_003722.4	50	Ctc/Ttc					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55136826	55136826	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	79	409	0	ENST00000257290.5:c.1148G>T	p.Arg383Leu	p.R383L	ENST00000257290	NM_006206.4	383	cGt/cTt					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30671288	30671288	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	129	338	0	ENST00000376406.3:c.5589G>C	p.Lys1863Asn	p.K1863N	ENST00000376406	NM_014641.2	1863	aaG/aaC					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106520048	106520048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	141	315	0	ENST00000359195.3:c.2476G>A	p.Glu826Lys	p.E826K	ENST00000359195	NM_002649.2	826	Gaa/Aaa					NEWRECORD																																																																									
CDKN2B	0	MSKCC	GRCh37	9	22006075	22006075	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	274	210	1	ENST00000276925.6:c.328G>A	p.Asp110Asn	p.D110N	ENST00000276925	NM_004936.3	110	Gat/Aat					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28897069	28897069	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	139	216	0	ENST00000282397.4:c.2811C>A	p.His937Gln	p.H937Q	ENST00000282397	NM_002019.4	937	caC/caA					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436513	110436513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	145	347	0	ENST00000375856.3:c.1888G>A	p.Glu630Lys	p.E630K	ENST00000375856	NM_003749.2	630	Gag/Aag					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81609337	81609337	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	104	374	0	ENST00000298171.2:c.935G>A	p.Arg312Lys	p.R312K	ENST00000298171	NM_000369.2	312	aGa/aAa					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81946230	81946230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	162	515	0	ENST00000359376.3:c.1963G>C	p.Glu655Gln	p.E655Q	ENST00000359376	NM_002661.3	655	Gag/Cag					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41228526	41228526	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	138	439	0	ENST00000357654.3:c.4463A>G	p.Asn1488Ser	p.N1488S	ENST00000357654	NM_007294.3	1488	aAt/aGt					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412791	63412791	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	85	378	0	ENST00000330258.3:c.376C>A	p.Gln126Lys	p.Q126K	ENST00000330258	NM_152424.3	126	Caa/Aaa					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0009072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	489	277	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0009072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	204	237	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164805	47164805	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	297	223	0	ENST00000409792.3:c.1321C>T	p.Arg441Ter	p.R441*	ENST00000409792	NM_014159.6	441	Cga/Tga					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95572484	95572484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	359	320	0	ENST00000343455.3:c.2881C>T	p.Pro961Ser	p.P961S	ENST00000343455	NM_177438.2	961	Cct/Tct					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120483337	120483338	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0009072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	228	272	0	ENST00000256646.2:c.3023_3024delinsTT	p.Ser1008Phe	p.S1008F	ENST00000256646	NM_024408.3	1008	tCC/tTT					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15355057	15355057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004989-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	43	560	0	ENST00000263377.2:c.2566G>A	p.Val856Met	p.V856M	ENST00000263377	NM_058243.2	856	Gtg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	614	565	0	ENST00000269305.4:c.578A>T	p.His193Leu	p.H193L	ENST00000269305	NM_001126112.2	193	cAt/cTt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484252	8484252	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	301	455	1	ENST00000356435.5:c.3280G>T	p.Gly1094Trp	p.G1094W	ENST00000356435		1094	Ggg/Tgg					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12038942	12038942	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	199	452	0	ENST00000396373.4:c.1235G>T	p.Gly412Val	p.G412V	ENST00000396373	NM_001987.4	412	gGa/gTa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88472636	88472636	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	128	337	0	ENST00000360948.2:c.1919T>C	p.Val640Ala	p.V640A	ENST00000360948	NM_001012338.2	640	gTg/gCg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645174	67645174	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	436	405	0	ENST00000264010.4:c.439C>G	p.Leu147Val	p.L147V	ENST00000264010	NM_006565.3	147	Ctt/Gtt					NEWRECORD																																																																									
PMAIP1	0	MSKCC	GRCh37	18	57569912	57569912	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	52	345	0	ENST00000316660.6:c.92G>A	p.Arg31Lys	p.R31K	ENST00000316660	NM_021127.2	31	aGa/aAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577153	7577153	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0004822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	535	456	0	ENST00000269305.4:c.785G>T	p.Gly262Val	p.G262V	ENST00000269305	NM_001126112.2	262	gGt/gTt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	1140	335	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			5599	271	401	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0004927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	4194	478	5	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50367288	50367288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1962	251	371	2	ENST00000331340.3:c.95C>T	p.Pro32Leu	p.P32L	ENST00000331340	NM_006060.4	32	cCg/cTg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992637	72992637	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	358	450	1	ENST00000268489.5:c.1408G>T	p.Glu470Ter	p.E470*	ENST00000268489	NM_006885.3	470	Gaa/Taa					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44527560	44527560	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0004927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	239	420	0	ENST00000291552.4:c.44+1G>A		p.X15_splice	ENST00000291552	NM_006758.2	15						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0006136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	74	381	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	108	497	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112170777	112170780	+	frameshift_variant	Frame_Shift_Del	DEL	CAGA	CAGA	-			P-0006136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	94	530	0	ENST00000257430.4:c.1875_1878del	p.Asn627LeufsTer2	p.N627Lfs*2	ENST00000257430	NM_000038.5	625	CAGAca/ca					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575080	48575080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	81	447	0	ENST00000342988.3:c.274C>T	p.His92Tyr	p.H92Y	ENST00000342988	NM_005359.5	92	Cat/Tat					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66468014	66468014	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	41	272	1	ENST00000273854.3:c.255G>T	p.Glu85Asp	p.E85D	ENST00000273854	NM_004439.5	85	gaG/gaT					NEWRECORD																																																																									
IDH2	0	MSKCC	GRCh37	15	90631837	90631837	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	310	524	0	ENST00000330062.3:c.516G>T	p.Arg172Ser	p.R172S	ENST00000330062	NM_002168.2	172	agG/agT					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151879337	151879337	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	276	483	0	ENST00000262189.6:c.5608C>T	p.Gln1870Ter	p.Q1870*	ENST00000262189	NM_170606.2	1870	Cag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	69	379	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57484595	57484595	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	53	216	0	ENST00000371085.3:c.679C>A	p.Gln227Lys	p.Q227K	ENST00000371085	NM_000516.4	227	Cag/Aag					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341250	8341250	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	40	318	0	ENST00000356435.5:c.4966G>T	p.Ala1656Ser	p.A1656S	ENST00000356435		1656	Gct/Tct					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29754827	29754827	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	119	362	0	ENST00000389048.3:c.1108G>A	p.Glu370Lys	p.E370K	ENST00000389048	NM_004304.4	370	Gag/Aag					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162745633	162745633	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	130	360	0	ENST00000367921.3:c.2048G>T	p.Ser683Ile	p.S683I	ENST00000367921	NM_006182.2	683	aGt/aTt					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176012866	176012866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	74	479	0	ENST00000367669.3:c.1510C>A	p.Gln504Lys	p.Q504K	ENST00000367669	NM_022457.5	504	Cag/Aag					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25965523	25965523	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	159	515	1	ENST00000435504.4:c.3683G>A	p.Ser1228Asn	p.S1228N	ENST00000435504		1228	aGc/aAc					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99156012	99156012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	193	500	2	ENST00000074304.5:c.692G>A	p.Arg231His	p.R231H	ENST00000074304	NM_001134224.1	231	cGc/cAc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212285262	212285262	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	60	366	0	ENST00000342788.4:c.3039G>T	p.Leu1013Phe	p.L1013F	ENST00000342788	NM_005235.2	1013	ttG/ttT					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294214	1294214	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	52	275	0	ENST00000310581.5:c.787C>A	p.Arg263Ser	p.R263S	ENST00000310581	NM_198253.2	263	Cgt/Agt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117622181	117622181	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	98	412	0	ENST00000368508.3:c.6689G>T	p.Arg2230Ile	p.R2230I	ENST00000368508	NM_002944.2	2230	aGa/aTa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117718167	117718167	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	78	430	0	ENST00000368508.3:c.690A>T	p.Leu230Phe	p.L230F	ENST00000368508	NM_002944.2	230	ttA/ttT					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21970991	21970991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	42	244	0	ENST00000304494.5:c.367C>A	p.His123Asn	p.H123N	ENST00000304494	NM_000077.4	123	Cat/Aat					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970991	21970991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	42	244	0	ENST00000304494.5:c.367C>A	p.His123Asn	p.H123N	ENST00000304494	NM_000077.4	123	Cat/Aat					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759778	133759778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	26	196	0	ENST00000318560.5:c.2101G>T	p.Gly701Cys	p.G701C	ENST00000318560	NM_005157.4	701	Ggc/Tgc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5211748	5211748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	67	404	0	ENST00000357368.4:c.5087G>T	p.Arg1696Leu	p.R1696L	ENST00000357368	NM_002850.3	1696	cGc/cTc					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944884	31944884	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	40	277	0	ENST00000340398.3:c.217del	p.Glu73ArgfsTer10	p.E73Rfs*10	ENST00000340398	NM_001013699.2	73	Gag/ag					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221313	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	T			P-0009960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	74	458	0	ENST00000326873.7:c.836_837delinsT	p.Gly279ValfsTer8	p.G279Vfs*8	ENST00000326873	NM_000455.4	279	gGC/gT					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0006973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	140	330	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0006973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	374	476	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0006973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	202	445	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
RIT1	0	MSKCC	GRCh37	1	155880494	155880494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1533	331	577	0	ENST00000368323.3:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000368323	NM_006912.5	20	cGg/cAg					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1293572	1293572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	161	477	0	ENST00000310581.5:c.1429C>T	p.Leu477Phe	p.L477F	ENST00000310581	NM_198253.2	477	Ctc/Ttc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3830859	3830859	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	381	457	0	ENST00000262367.5:c.1697C>T	p.Ser566Phe	p.S566F	ENST00000262367	NM_004380.2	566	tCc/tTc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9934606	9934606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	209	500	1	ENST00000330684.3:c.1549G>A	p.Glu517Lys	p.E517K	ENST00000330684	NM_001134407.1	517	Gaa/Aaa					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56436145	56436145	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1194	63	597	0	ENST00000407977.2:c.992C>G	p.Ser331Cys	p.S331C	ENST00000407977		331	tCt/tGt					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56363618	56363618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	251	334	0	ENST00000348428.3:c.397C>T	p.Pro133Ser	p.P133S	ENST00000348428	NM_006785.3	133	Cca/Tca					NEWRECORD																																																																									
DNAJB1	0	MSKCC	GRCh37	19	14626903	14626903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	769	773	1	ENST00000254322.2:c.872C>T	p.Pro291Leu	p.P291L	ENST00000254322	NM_006145.1	291	cCt/cTt					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114910852	114910852	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	184	769	2	ENST00000543371.1:c.973del	p.Gln325ArgfsTer26	p.Q325Rfs*26	ENST00000543371	NM_001198531.1	324	tCc/tc					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71102881	71102882	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0006973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	323	477	0	ENST00000318789.4:c.325_326delinsTT	p.Pro109Phe	p.P109F	ENST00000318789	NM_032682.5	109	CCc/TTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579576	7579577	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	C			P-0000249-T02-IM3									Unknown	SOMATIC				MSK-IMPACT			186	26	295	0	ENST00000269305.4:c.110_111delCCinsG	p.Ser37CysfsTer7	p.S37Cfs*7	ENST00000269305	NM_001126112.2	37	tCC/tG					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55604673	55604673	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	258	537	1	ENST00000288135.5:c.2881G>A	p.Gly961Ser	p.G961S	ENST00000288135	NM_000222.2	961	Ggc/Agc					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149441061	149441061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	56	726	0	ENST00000286301.3:c.1851G>T	p.Met617Ile	p.M617I	ENST00000286301	NM_005211.3	617	atG/atT					NEWRECORD																																																																									
GREM1	0	MSKCC	GRCh37	15	33023178	33023178	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	77	1111	0	ENST00000300177.4:c.287C>T	p.Thr96Ile	p.T96I	ENST00000300177	NM_001191322.1	96	aCc/aTc					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78897430	78897430	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1128	68	749	0	ENST00000306801.3:c.2765A>G	p.Gln922Arg	p.Q922R	ENST00000306801	NM_020761.2	922	cAg/cGg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29562746	29562746	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	177	400	0	ENST00000358273.4:c.3826C>T	p.Arg1276Ter	p.R1276*	ENST00000358273	NM_001042492.2	1276	Cga/Tga					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15272525	15272525	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	143	306	0	ENST00000263388.2:c.5914G>A	p.Glu1972Lys	p.E1972K	ENST00000263388	NM_000435.2	1972	Gag/Aag					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551574	150551574	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	230	468	0	ENST00000369026.2:c.433G>C	p.Glu145Gln	p.E145Q	ENST00000369026	NM_021960.4	145	Gag/Cag					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176153772	176153772	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	200	402	0	ENST00000367669.3:c.464T>G	p.Phe155Cys	p.F155C	ENST00000367669	NM_022457.5	155	tTt/tGt					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29473981	29473981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	130	476	3	ENST00000389048.3:c.2194G>A	p.Asp732Asn	p.D732N	ENST00000389048	NM_004304.4	732	Gac/Aac					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198268439	198268439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	268	513	0	ENST00000335508.6:c.1589C>T	p.Pro530Leu	p.P530L	ENST00000335508	NM_012433.2	530	cCt/cTt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248486	212248486	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	388	568	1	ENST00000342788.4:c.3781G>A	p.Glu1261Lys	p.E1261K	ENST00000342788	NM_005235.2	1261	Gag/Aag					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713741	30713741	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199660234		P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	292	369	0	ENST00000359013.4:c.1141C>T	p.Arg381Trp	p.R381W	ENST00000359013	NM_001024847.2	381	Cgg/Tgg					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49940894	49940894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	207	878	0	ENST00000296474.3:c.149C>T	p.Ser50Phe	p.S50F	ENST00000296474	NM_002447.2	50	tCc/tTc					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1279534	1279534	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	93	603	0	ENST00000310581.5:c.2002G>T	p.Glu668Ter	p.E668*	ENST00000310581	NM_198253.2	668	Gag/Tag					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	401718	401718	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	123	458	0	ENST00000380956.4:c.1040C>T	p.Pro347Leu	p.P347L	ENST00000380956	NM_001195286.1	347	cCc/cTc					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93979378	93979378	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	218	465	1	ENST00000369303.4:c.1450G>A	p.Asp484Asn	p.D484N	ENST00000369303	NM_004440.3	484	Gat/Aat					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117686267	117686267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	216	423	0	ENST00000368508.3:c.3074G>A	p.Gly1025Glu	p.G1025E	ENST00000368508	NM_002944.2	1025	gGa/gAa					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6431584	6431584	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	105	223	0	ENST00000356142.4:c.137T>G	p.Val46Gly	p.V46G	ENST00000356142	NM_018890.3	46	gTa/gGa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116340234	116340234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	210	387	0	ENST00000397752.3:c.1096C>T	p.Pro366Ser	p.P366S	ENST00000397752	NM_000245.2	366	Cct/Tct					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151879526	151879526	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	288	424	0	ENST00000262189.6:c.5419C>G	p.Gln1807Glu	p.Q1807E	ENST00000262189	NM_170606.2	1807	Cag/Gag					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8636727	8636727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	636	298	1	ENST00000356435.5:c.182G>A	p.Gly61Glu	p.G61E	ENST00000356435		61	gGa/gAa					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98238434	98238434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	33	383	1	ENST00000331920.6:c.1610C>T	p.Thr537Ile	p.T537I	ENST00000331920	NM_000264.3	537	aCc/aTc					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114911535	114911535	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	571	654	2	ENST00000543371.1:c.1053G>C	p.Lys351Asn	p.K351N	ENST00000543371	NM_001198531.1	351	aaG/aaC					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64137244	64137244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	328	594	0	ENST00000334205.4:c.1676C>T	p.Pro559Leu	p.P559L	ENST00000334205	NM_003942.2	559	cCg/cTg					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26975759	26975759	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	161	410	0	ENST00000381527.3:c.1267C>T	p.Gln423Ter	p.Q423*	ENST00000381527	NM_001260.1	423	Cag/Tag					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28623828	28623828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	144	399	1	ENST00000241453.7:c.826C>T	p.His276Tyr	p.H276Y	ENST00000241453	NM_004119.2	276	Cat/Tat					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28908249	28908249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	150	526	0	ENST00000282397.4:c.2506G>A	p.Gly836Arg	p.G836R	ENST00000282397	NM_002019.4	836	Ggg/Agg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41961309	41961309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	306	741	0	ENST00000219905.7:c.217G>A	p.Gly73Ser	p.G73S	ENST00000219905	NM_001164273.1	73	Ggt/Agt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858424	9858424	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	229	531	0	ENST00000330684.3:c.2977C>T	p.Pro993Ser	p.P993S	ENST00000330684	NM_001134407.1	993	Cct/Tct					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23640971	23640971	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	260	352	0	ENST00000261584.4:c.2504C>T	p.Ser835Phe	p.S835F	ENST00000261584	NM_024675.3	835	tCc/tTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579361	7579361	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	423	568	0	ENST00000269305.4:c.326T>C	p.Phe109Ser	p.F109S	ENST00000269305	NM_001126112.2	109	tTc/tCc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29652981	29652981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	532	507	2	ENST00000358273.4:c.4979C>T	p.Ser1660Phe	p.S1660F	ENST00000358273	NM_001042492.2	1660	tCt/tTt					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37883621	37883621	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	316	604	0	ENST00000269571.5:c.3233C>T	p.Ser1078Phe	p.S1078F	ENST00000269571		1078	tCc/tTc					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120370	70120370	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	529	761	0	ENST00000245479.2:c.1372C>T	p.Gln458Ter	p.Q458*	ENST00000245479	NM_000346.3	458	Cag/Tag					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56411674	56411674	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	277	763	0	ENST00000348428.3:c.1858T>C	p.Tyr620His	p.Y620H	ENST00000348428	NM_006785.3	620	Tac/Cac					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42798881	42798881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	105	522	0	ENST00000575354.2:c.4453C>T	p.Pro1485Ser	p.P1485S	ENST00000575354	NM_015125.3	1485	Ccg/Tcg					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54961538	54961538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	342	396	0	ENST00000312783.6:c.94C>T	p.Pro32Ser	p.P32S	ENST00000312783	NM_198436.1	32	Cct/Tct					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44948986	44948986	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	342	148	1	ENST00000377967.4:c.3549-2A>G		p.X1183_splice	ENST00000377967	NM_021140.2	1183						NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100617642	100617642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	286	325	1	ENST00000308731.7:c.427C>T	p.His143Tyr	p.H143Y	ENST00000308731	NM_000061.2	143	Cac/Tac					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938711	76938720	+	frameshift_variant	Frame_Shift_Del	DEL	TTCATCTGAA	TTCATCTGAA	-			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	396	245	0	ENST00000373344.5:c.2028_2037del	p.Asn676LysfsTer17	p.N676Kfs*17	ENST00000373344	NM_000489.3	676	aaTTCAGATGAA/aa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187527360	187527361	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0004952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	74	193	0	ENST00000441802.2:c.10213_10214delinsAA	p.Gly3405Asn	p.G3405N	ENST00000441802	NM_005245.3	3405	GGt/AAt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713834	30713834	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	325	422	2	ENST00000359013.4:c.1234G>A	p.Val412Met	p.V412M	ENST00000359013	NM_001024847.2	412	Gtg/Atg					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243778441	243778441	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	139	428	0	ENST00000263826.5:c.584C>G	p.Thr195Ser	p.T195S	ENST00000263826	NM_005465.4	195	aCt/aGt					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87636203	87636203	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	194	422	1	ENST00000277120.3:c.2368C>T	p.Arg790Ter	p.R790*	ENST00000277120		790	Cga/Tga					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56436032	56436032	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009713-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	129	310	1	ENST00000407977.2:c.1105C>A	p.Pro369Thr	p.P369T	ENST00000407977		369	Ccc/Acc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441224	52441224	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	213	356	0	ENST00000460680.1:c.546G>C	p.Glu182Asp	p.E182D	ENST00000460680	NM_004656.3	182	gaG/gaC					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80537255	80537256	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0008904-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	183	215	0	ENST00000286548.4:c.142_143delGGinsTT	p.Gly48Leu	p.G48L	ENST00000286548	NM_002072.3	48	GGa/TTa					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	65	170	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202139614	202139614	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0009315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	206	490	1	ENST00000358485.4:c.775G>T	p.Glu259Ter	p.E259*	ENST00000358485	NM_001080125.1	259	Gag/Tag					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202150030	202150030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	127	307	0	ENST00000358485.4:c.1471C>T	p.Arg491Ter	p.R491*	ENST00000358485	NM_001080125.1	491	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	137	364	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0009375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	271	553	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0003981-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			473	426	531	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0003981-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			713	147	344	0	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140476748	140476748	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0003981-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			758	61	398	0	ENST00000288602.6:c.1658T>G	p.Leu553Arg	p.L553R	ENST00000288602	NM_004333.4	553	cTt/cGt					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59770854	59770854	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0003981-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			653	164	487	0	ENST00000259008.2:c.2512G>C	p.Asp838His	p.D838H	ENST00000259008	NM_032043.2	838	Gat/Cat					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15288385	15288385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0003981-T01-IM3									Unknown	SOMATIC				MSK-IMPACT			236	174	340	0	ENST00000263388.2:c.4354C>G	p.Leu1452Val	p.L1452V	ENST00000263388	NM_000435.2	1452	Ctc/Gtc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0005363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	200	345	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11210283	11210283	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0005363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	44	302	4	ENST00000361445.4:c.4470G>C	p.Trp1490Cys	p.W1490C	ENST00000361445	NM_004958.3	1490	tgG/tgC					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25973162	25973162	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	68	462	0	ENST00000435504.4:c.1263A>T	p.Arg421Ser	p.R421S	ENST00000435504		421	agA/agT					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	432895	432895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	87	399	1	ENST00000399788.2:c.2021G>A	p.Arg674Gln	p.R674Q	ENST00000399788	NM_001042603.1	674	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578247	7578247	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0005363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	135	467	2	ENST00000269305.4:c.602T>A	p.Leu201Ter	p.L201*	ENST00000269305	NM_001126112.2	201	tTg/tAg					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005363-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	23	448	4	ENST00000263121.7:c.1130G>T	p.Arg377Leu	p.R377L	ENST00000263121	NM_003073.3	377	cGt/cTt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	48	225	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955550	48955550	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	49	345	0	ENST00000267163.4:c.1666C>T	p.Arg556Ter	p.R556*	ENST00000267163	NM_000321.2	556	Cga/Tga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0008425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	72	416	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49432741	49432741	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	24	186	0	ENST00000301067.7:c.8398C>T	p.Gln2800Ter	p.Q2800*	ENST00000301067	NM_003482.3	2800	Cag/Tag					NEWRECORD																																																																									
HIST1H3B	8358	MSKCC	GRCh37	6	26032069	26032069	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1789	175	762	0	ENST00000244661.2:c.220G>C	p.Glu74Gln	p.E74Q	ENST00000244661	NM_003537.3	74	Gaa/Caa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934572		P-0008425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	51	328	0	ENST00000269305.4:c.731G>A	p.Gly244Asp	p.G244D	ENST00000269305	NM_001126112.2	244	gGc/gAc					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57754320	57754320	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	62	311	0	ENST00000274289.3:c.531G>C	p.Leu177Phe	p.L177F	ENST00000274289	NM_006622.3	177	ttG/ttC					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007411-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			787	250	383	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685307	89685307	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007411-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			386	195	317	0	ENST00000371953.3:c.202T>C	p.Tyr68His	p.Y68H	ENST00000371953	NM_000314.4	68	Tac/Cac					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26032039	26032039	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007411-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1127	367	898	0	ENST00000244661.2:c.250C>A	p.Arg84Ser	p.R84S	ENST00000244661	NM_003537.3	84	Cgc/Agc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89391128	89391128	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007411-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			584	186	355	0	ENST00000336596.2:c.1194C>A	p.Asp398Glu	p.D398E	ENST00000336596	NM_005233.5	398	gaC/gaA					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0009813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	260	386	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	483	606	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT					NEWRECORD																																																																									
CXCR4	0	MSKCC	GRCh37	2	136872863	136872863	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	725	1087	0	ENST00000241393.3:c.635G>T	p.Gly212Val	p.G212V	ENST00000241393	NM_003467.2	212	gGt/gTt					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57859450	57859450	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009813-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	615	1023	0	ENST00000228682.2:c.595A>G	p.Met199Val	p.M199V	ENST00000228682	NM_005269.2	199	Atg/Gtg					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98209721	98209721	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	109	343	0	ENST00000331920.6:c.3817G>A	p.Glu1273Lys	p.E1273K	ENST00000331920	NM_000264.3	1273	Gaa/Aaa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	GA			P-0008344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1254	507	597	1	ENST00000256078.4:c.182_183delinsTC	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTC					NEWRECORD																																																																									
HIST1H3A	0	MSKCC	GRCh37	6	26020949	26020949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	977	1153	5	ENST00000357647.3:c.232G>A	p.Asp78Asn	p.D78N	ENST00000357647	NM_003529.2	78	Gac/Aac					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118374676	118374676	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	220	680	0	ENST00000534358.1:c.8069C>A	p.Thr2690Lys	p.T2690K	ENST00000534358	NM_005933.3	2690	aCa/aAa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433532	49433532	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0008344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	475	779	0	ENST00000301067.7:c.8021A>G	p.Gln2674Arg	p.Q2674R	ENST00000301067	NM_003482.3	2674	cAa/cGa					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7125313	7125313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	351	568	0	ENST00000302850.5:c.3239G>C	p.Gly1080Ala	p.G1080A	ENST00000302850	NM_000208.2	1080	gGc/gCc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	207	412	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266611	198266611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	41	354	0	ENST00000335508.6:c.2225G>A	p.Gly742Asp	p.G742D	ENST00000335508	NM_012433.2	742	gGt/gAt					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50468036	50468036	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	74	353	0	ENST00000331340.3:c.1271A>G	p.Asn424Ser	p.N424S	ENST00000331340	NM_006060.4	424	aAc/aGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577080	7577087	+	frameshift_variant	Frame_Shift_Del	DEL	TTCCTCTG	TTCCTCTG	-			P-0009004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1229	84	488	0	ENST00000269305.4:c.851_858del	p.Thr284ArgfsTer19	p.T284Rfs*19	ENST00000269305	NM_001126112.2	284	aCAGAGGAA/a					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599332	55599332	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	605	254	0	ENST00000288135.5:c.2458G>T	p.Asp820Tyr	p.D820Y	ENST00000288135	NM_000222.2	820	Gat/Tat					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49033823	49033838	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GTGTATCGGCTAGCCT	GTGTATCGGCTAGCCT	-			P-0004784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	224	197	0	ENST00000267163.4:c.1961-1_1975del		p.X654_splice	ENST00000267163	NM_000321.2	654						NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593582	55593598	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	AAACCCATGTATGAAGT	AAACCCATGTATGAAGT	CA			P-0004784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	541	295	0	ENST00000288135.5:c.1648_1664delinsCA	p.Lys550_Val555delinsGln	p.K550_V555delinsQ	ENST00000288135	NM_000222.2	550	AAACCCATGTATGAAGTa/CAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	486	504	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55227855	55227855	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	304	334	0	ENST00000275493.2:c.1322T>G	p.Val441Gly	p.V441G	ENST00000275493	NM_005228.3	441	gTc/gGc					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102195296	102195296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	242	742	1	ENST00000263464.3:c.56C>T	p.Thr19Met	p.T19M	ENST00000263464	NM_001165.4	19	aCg/aTg					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15350291	15350291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			64	495	432	1	ENST00000263377.2:c.3488G>A	p.Arg1163Gln	p.R1163Q	ENST00000263377	NM_058243.2	1163	cGg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164587	112164587	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	278	257	0	ENST00000257430.4:c.1661del	p.Arg554GlnfsTer4	p.R554Qfs*4	ENST00000257430	NM_000038.5	554	cGa/ca					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0009215-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	55	262	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	21	719	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45368213	45368213	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	60	721	0	ENST00000262160.6:c.1389C>A	p.Cys463Ter	p.C463*	ENST00000262160	NM_005901.5	463	tgC/tgA					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193111044	193111044	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	113	273	0	ENST00000367435.3:c.577A>G	p.Lys193Glu	p.K193E	ENST00000367435	NM_024529.4	193	Aaa/Gaa					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193111061	193111061	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	101	298	1	ENST00000367435.3:c.594G>T	p.Lys198Asn	p.K198N	ENST00000367435	NM_024529.4	198	aaG/aaT					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56494902	56494902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0008661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	160	243	0	ENST00000267101.3:c.3259A>G	p.Met1087Val	p.M1087V	ENST00000267101	NM_001982.3	1087	Atg/Gtg					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49397755	49397755	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0008661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	348	566	0	ENST00000418115.1:c.469del	p.Met157TrpfsTer11	p.M157Wfs*11	ENST00000418115	NM_001664.2	157	Atg/tg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0006012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	21	735	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	324	420	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	187	457	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87342596	87342596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	111	493	0	ENST00000277120.3:c.881C>G	p.Ser294Cys	p.S294C	ENST00000277120		294	tCt/tGt					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41762514	41762514	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	127	444	0	ENST00000301178.4:c.2194G>C	p.Val732Leu	p.V732L	ENST00000301178	NM_021913.4	732	Gtg/Ctg					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54948488	54948488	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	145	525	0	ENST00000312783.6:c.830G>A	p.Trp277Ter	p.W277*	ENST00000312783	NM_198436.1	277	tGg/tAg					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922936	39922936	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	181	716	0	ENST00000378444.4:c.3772G>A	p.Gly1258Ser	p.G1258S	ENST00000378444	NM_001123385.1	1258	Ggc/Agc					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411489	63411489	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200798538		P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	303	820	0	ENST00000330258.3:c.1678C>T	p.Arg560Trp	p.R560W	ENST00000330258	NM_152424.3	560	Cgg/Tgg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573478	48573479	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0005257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	187	627	0	ENST00000342988.3:c.63_64del	p.His21GlnfsTer6	p.H21Qfs*6	ENST00000342988	NM_005359.5	21	cAT/c					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	246	600	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	34	547	2	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156838432	156838432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55909005		P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	269	364	0	ENST00000524377.1:c.710C>T	p.Thr237Met	p.T237M	ENST00000524377	NM_002529.3	237	aCg/aTg					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225365195	225365195	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	191	319	0	ENST00000264414.4:c.1495G>A	p.Gly499Ser	p.G499S	ENST00000264414	NM_003590.4	499	Ggt/Agt					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227661965	227661965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	144	298	0	ENST00000305123.5:c.1490G>A	p.Gly497Glu	p.G497E	ENST00000305123	NM_005544.2	497	gGa/gAa					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41748296	41748296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	194	374	1	ENST00000226382.2:c.473G>A	p.Arg158His	p.R158H	ENST00000226382	NM_003924.3	158	cGc/cAc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55961834	55961834	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	226	393	0	ENST00000263923.4:c.2729-2A>T		p.X910_splice	ENST00000263923	NM_002253.2	910						NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249501	153249501	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1316840275		P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	178	361	0	ENST00000281708.4:c.1277C>T	p.Ser426Leu	p.S426L	ENST00000281708	NM_033632.3	426	tCa/tTa					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128829207	128829207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	126	301	0	ENST00000249373.3:c.215C>T	p.Pro72Leu	p.P72L	ENST00000249373	NM_005631.4	72	cCg/cTg					NEWRECORD																																																																									
HOXB13	0	MSKCC	GRCh37	17	46804331	46804331	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	238	671	1	ENST00000290295.7:c.676G>T	p.Gly226Trp	p.G226W	ENST00000290295	NM_006361.5	226	Ggg/Tgg					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1625615	1625615	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	188	700	3	ENST00000344749.5:c.459C>A	p.Tyr153Ter	p.Y153*	ENST00000344749	NM_001136139.2	153	taC/taA					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098784	178098825	+	inframe_deletion	In_Frame_Del	DEL	CTGAATTGGGAGAAATTCACCTGTCTCTTCATCTAGTTGTAA	CTGAATTGGGAGAAATTCACCTGTCTCTTCATCTAGTTGTAA	-			P-0009526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	428	594	0	ENST00000397062.3:c.220_261del	p.Leu74_Gln87del	p.L74_Q87del	ENST00000397062	NM_006164.4	74	TTACAACTAGATGAAGAGACAGGTGAATTTCTCCCAATTCAG/-					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584514	48584514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	35	514	0	ENST00000342988.3:c.692delG	p.Gly231AlafsTer10	p.G231Afs*10	ENST00000342988	NM_005359.5	229	ctG/ct					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0005755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	21	462	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	54	602	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100454	8100454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	18	686	1	ENST00000346208.3:c.428G>A	p.Gly143Glu	p.G143E	ENST00000346208		143	gGg/gAg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044497	47044497	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0005755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	36	340	0	ENST00000329236.7:c.1764del	p.Glu589LysfsTer37	p.E589Kfs*37	ENST00000329236	NM_001204466.1	587	cAa/ca					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70118998	70118998	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0005755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	78	691	0	ENST00000245479.2:c.571del	p.Glu191ArgfsTer28	p.E191Rfs*28	ENST00000245479	NM_000346.3	190	gaG/ga					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	133	433	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0008163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	147	256	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8507362	8507362	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1223	161	573	0	ENST00000356435.5:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000356435		539	cCa/cGa					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118343667	118343667	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	116	317	0	ENST00000534358.1:c.1793C>T	p.Pro598Leu	p.P598L	ENST00000534358	NM_005933.3	598	cCt/cTt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72831042	72831042	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1330	246	916	0	ENST00000268489.5:c.5539C>T	p.Gln1847Ter	p.Q1847*	ENST00000268489	NM_006885.3	1847	Cag/Tag					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3110178	3110178	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	151	495	0	ENST00000078429.4:c.168C>G	p.Ile56Met	p.I56M	ENST00000078429	NM_002067.2	56	atC/atG					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70338683	70338683	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	89	587	0	ENST00000374080.3:c.79C>G	p.Gln27Glu	p.Q27E	ENST00000374080		27	Cag/Gag					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66233143	66233143	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	78	414	0	ENST00000273854.3:c.1857-1G>A		p.X619_splice	ENST00000273854	NM_004439.5	619						NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151874026	151874026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	172	521	0	ENST00000262189.6:c.8512G>A	p.Glu2838Lys	p.E2838K	ENST00000262189	NM_170606.2	2838	Gaa/Aaa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151874065	151874065	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	200	534	0	ENST00000262189.6:c.8473G>T	p.Glu2825Ter	p.E2825*	ENST00000262189	NM_170606.2	2825	Gaa/Taa					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435438	110435438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	43	260	0	ENST00000375856.3:c.2963C>G	p.Ser988Cys	p.S988C	ENST00000375856	NM_003749.2	988	tCt/tGt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591933	48591933	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	82	383	0	ENST00000342988.3:c.1096C>G	p.Gln366Glu	p.Q366E	ENST00000342988	NM_005359.5	366	Caa/Gaa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057937	27057937	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	67	439	0	ENST00000324856.7:c.1650delC	p.Tyr551ThrfsTer68	p.Y551Tfs*68	ENST00000324856	NM_006015.4	549	Ccc/cc					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56177746	56177773	+	protein_altering_variant	In_Frame_Del	DEL	CATTTAGAGAAAACTGGAAAAGGATTAT	CATTTAGAGAAAACTGGAAAAGGATTAT	G			P-0004790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	64	475	0	ENST00000399503.3:c.2719_2746delinsG	p.His907_Cys916delinsGly	p.H907_C916delinsG	ENST00000399503	NM_005921.1	907	CATTTAGAGAAAACTGGAAAAGGATTATgt/Ggt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0008717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	60	318	2	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0008717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	16	193	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	171	427	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70349973	70349973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	79	501	1	ENST00000374080.3:c.3956G>A	p.Arg1319His	p.R1319H	ENST00000374080		1319	cGc/cAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	23	404	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0009607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	199	427	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0009607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	269	513	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10274207	10274207	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	32	191	0	ENST00000330684.3:c.62C>T	p.Pro21Leu	p.P21L	ENST00000330684	NM_001134407.1	21	cCg/cTg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29679326	29679326	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009607-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	179	400	0	ENST00000358273.4:c.7509C>A	p.Tyr2503Ter	p.Y2503*	ENST00000358273	NM_001042492.2	2503	taC/taA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578235	7578235	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	952	469	0	ENST00000269305.4:c.614A>G	p.Tyr205Cys	p.Y205C	ENST00000269305	NM_001126112.2	205	tAt/tGt					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157527391	157527391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	382	462	0	ENST00000346085.5:c.5116C>G	p.Pro1706Ala	p.P1706A	ENST00000346085	NM_020732.3	1706	Ccc/Gcc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118359363	118359363	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0005915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	362	397	0	ENST00000534358.1:c.4367A>G	p.His1456Arg	p.H1456R	ENST00000534358	NM_005933.3	1456	cAc/cGc					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47422454	47422454	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1953	804	329	1	ENST00000377045.4:c.88C>T	p.Arg30Cys	p.R30C	ENST00000377045	NM_001654.4	30	Cgc/Tgc					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47430720	47430720	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0005915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1981	180	276	0	ENST00000377045.4:c.1687-2A>T		p.X563_splice	ENST00000377045	NM_001654.4	563						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	627	577	1	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40474396	40474396	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	381	765	1	ENST00000264657.5:c.2005C>A	p.Pro669Thr	p.P669T	ENST00000264657	NM_139276.2	669	Cca/Aca					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0007961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			900	219	299	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643328	52643328	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0007961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			500	198	400	0	ENST00000394830.3:c.2567+1G>C		p.X856_splice	ENST00000394830	NM_018313.4	856						NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16237596	16237596	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0007961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			619	62	314	0	ENST00000375759.3:c.1043A>T	p.Asp348Val	p.D348V	ENST00000375759	NM_015001.2	348	gAt/gTt					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156848942	156848942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			924	130	316	0	ENST00000524377.1:c.1834G>A	p.Ala612Thr	p.A612T	ENST00000524377	NM_002529.3	612	Gct/Act					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156849036	156849036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			956	123	301	0	ENST00000524377.1:c.1928G>A	p.Gly643Asp	p.G643D	ENST00000524377	NM_002529.3	643	gGt/gAt					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25505508	25505508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1271	72	385	1	ENST00000264709.3:c.250G>A	p.Ala84Thr	p.A84T	ENST00000264709	NM_175629.2	84	Gcc/Acc					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	347852	347852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1288	107	443	0	ENST00000262320.3:c.1654G>C	p.Ala552Pro	p.A552P	ENST00000262320	NM_003502.3	552	Gcc/Ccc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191511	10191511	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			707	213	345	0	ENST00000256474.2:c.505del	p.Leu169Ter	p.L169*	ENST00000256474	NM_000551.3	168	agC/ag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0009118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	191	302	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	185	272	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175676	112175679	+	frameshift_variant	Frame_Shift_Del	DEL	AGAG	AGAG	-			P-0009118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	205	424	0	ENST00000257430.4:c.4391_4394delAGAG	p.Glu1464ValfsTer8	p.E1464Vfs*8	ENST00000257430	NM_000038.5	1462	aAGAGa/aa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467814	66467814	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0009118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	212	384	0	ENST00000273854.3:c.455A>G	p.Asn152Ser	p.N152S	ENST00000273854	NM_004439.5	152	aAt/aGt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66535406	66535406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	67	79	0	ENST00000273854.3:c.55G>A	p.Gly19Ser	p.G19S	ENST00000273854	NM_004439.5	19	Ggc/Agc					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81942194	81942194	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A	rs147406608		P-0009118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	287	492	1	ENST00000359376.3:c.1731C>A	p.Phe577Leu	p.F577L	ENST00000359376	NM_002661.3	577	ttC/ttA					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128038171	128038177	+	frameshift_variant	Frame_Shift_Del	DEL	GCCTGCA	GCCTGCA	-			P-0009118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	220	309	0	ENST00000285398.2:c.1373_1379del	p.Val458AlafsTer7	p.V458Afs*7	ENST00000285398	NM_000122.1	458	gTGCAGGCc/gc					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	393097	393097	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0009118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			45	40	38	0	ENST00000380956.4:c.-55-1G>A		p.X19_splice	ENST00000380956	NM_001195286.1	19						NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	94	471	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135786502	135786502	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0005523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	100	420	0	ENST00000298552.3:c.1030-2A>T		p.X344_splice	ENST00000298552	NM_001162426.1	344						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0008654-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	37	340	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149589	202149589	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	141	367	0	ENST00000358485.4:c.1030G>A	p.Asp344Asn	p.D344N	ENST00000358485	NM_001080125.1	344	Gat/Aat					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0009101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	42	178	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	57	192	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0009101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	161	334	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0009101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	74	202	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108183186	108183186	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	93	322	0	ENST00000278616.4:c.5967G>C	p.Leu1989Phe	p.L1989F	ENST00000278616	NM_000051.3	1989	ttG/ttC					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56495692	56495702	+	frameshift_variant	Frame_Shift_Del	DEL	TTTTCAGGGGC	TTTTCAGGGGC	CCCT			P-0009101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	97	226	0	ENST00000267101.3:c.3882_3892delinsCCCT	p.Phe1295ProfsTer14	p.F1295Pfs*14	ENST00000267101	NM_001982.3	1294	gcTTTTCAGGGGCct/gcCCCTct					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40468824	40468824	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0009101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1508	186	625	0	ENST00000264657.5:c.2240C>G	p.Ser747Ter	p.S747*	ENST00000264657	NM_139276.2	747	tCa/tGa					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1612404	1612404	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1610	164	603	0	ENST00000344749.5:c.1615G>C	p.Glu539Gln	p.E539Q	ENST00000344749	NM_001136139.2	539	Gag/Cag					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2227124	2227124	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	26	123	0	ENST00000398665.3:c.4604G>T	p.Gly1535Val	p.G1535V	ENST00000398665	NM_032482.2	1535	gGa/gTa					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2225395	2225395	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	129	430	1	ENST00000398665.3:c.3605del	p.Arg1202LysfsTer8	p.R1202Kfs*8	ENST00000398665	NM_032482.2	1202	aGa/aa					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0007533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	85	92	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138426070	138426070	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	442	485	0	ENST00000289153.2:c.1461T>A	p.Asn487Lys	p.N487K	ENST00000289153	NM_006219.2	487	aaT/aaA					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23625405	23625405	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007533-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	376	447	0	ENST00000261584.4:c.3121A>G	p.Lys1041Glu	p.K1041E	ENST00000261584	NM_024675.3	1041	Aaa/Gaa					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0006538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	59	424	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			37	120	703	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851599	63851599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	51	360	0	ENST00000279873.7:c.2377C>T	p.Leu793Phe	p.L793F	ENST00000279873	NM_032199.2	793	Ctt/Ttt					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15821911	15821911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			17	85	565	0	ENST00000307771.7:c.304G>T	p.Glu102Ter	p.E102*	ENST00000307771	NM_005089.3	102	Gaa/Taa					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266100	41266213	+	inframe_deletion	In_Frame_Del	DEL	TCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTT	TCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTT	-			P-0006538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	21	595	0	ENST00000349496.5:c.100_213del	p.Gly34_Ser71del	p.G34_S71del	ENST00000349496	NM_001904.3	33	TCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTT/-					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29498310	29498310	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	55	580	0	ENST00000389048.3:c.1870G>A	p.Ala624Thr	p.A624T	ENST00000389048	NM_004304.4	624	Gct/Act					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88659576	88659576	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	61	501	0	ENST00000372037.3:c.359G>C	p.Arg120Pro	p.R120P	ENST00000372037	NM_004329.2	120	cGg/cCg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678572	88678572	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	28	267	0	ENST00000360948.2:c.964G>T	p.Glu322Ter	p.E322*	ENST00000360948	NM_001012338.2	322	Gag/Tag					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58740575	58740575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1385	76	804	0	ENST00000305921.3:c.1480C>T	p.Leu494Phe	p.L494F	ENST00000305921	NM_003620.3	494	Ctt/Ttt					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2207631	2207631	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	154	579	1	ENST00000398665.3:c.915G>T	p.Trp305Cys	p.W305C	ENST00000398665	NM_032482.2	305	tgG/tgT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	131	397	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71026112	71026112	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	63	349	0	ENST00000318789.4:c.1510C>T	p.Arg504Cys	p.R504C	ENST00000318789	NM_032682.5	504	Cgc/Tgc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023261	27023261	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	87	194	0	ENST00000324856.7:c.367G>T	p.Gly123Cys	p.G123C	ENST00000324856	NM_006015.4	123	Ggc/Tgc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142215271	142215271	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	114	469	0	ENST00000350721.4:c.5830C>G	p.Leu1944Val	p.L1944V	ENST00000350721	NM_001184.3	1944	Ctc/Gtc					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29911214	29911214	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	31	260	0	ENST00000376809.5:c.513G>A	p.Trp171Ter	p.W171*	ENST00000376809	NM_002116.7	171	tgG/tgA					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30673419	30673419	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	146	429	1	ENST00000376406.3:c.3541G>T	p.Glu1181Ter	p.E1181*	ENST00000376406	NM_014641.2	1181	Gag/Tag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117629961	117629961	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	43	390	0	ENST00000368508.3:c.6565G>C	p.Asp2189His	p.D2189H	ENST00000368508	NM_002944.2	2189	Gat/Cat					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117704661	117704661	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	69	316	0	ENST00000368508.3:c.2315A>T	p.Gln772Leu	p.Q772L	ENST00000368508	NM_002944.2	772	cAg/cTg					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43623655	43623655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	136	445	0	ENST00000355710.3:c.3283G>T	p.Val1095Leu	p.V1095L	ENST00000355710	NM_020975.4	1095	Gta/Tta					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49427446	49427446	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	143	479	0	ENST00000301067.7:c.11042A>T	p.Gln3681Leu	p.Q3681L	ENST00000301067	NM_003482.3	3681	cAg/cTg					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95574364	95574364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	95	393	0	ENST00000343455.3:c.2503G>A	p.Gly835Ser	p.G835S	ENST00000343455	NM_177438.2	835	Ggt/Agt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49427027	49427027	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	46	295	0	ENST00000301067.7:c.11461del	p.Gln3821ArgfsTer9	p.Q3821Rfs*9	ENST00000301067	NM_003482.3	3821	Cag/ag					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643399	52643399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	133	738	0	ENST00000394830.3:c.2497C>A	p.Arg833Ser	p.R833S	ENST00000394830	NM_018313.4	833	Cgc/Agc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	74	421	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600326	10600326	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0009277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	68	439	0	ENST00000171111.5:c.1529C>T	p.Ala510Val	p.A510V	ENST00000171111	NM_203500.1	510	gCa/gTa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	246	515	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89653786	89653786	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006473-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	191	363	0	ENST00000371953.3:c.84T>G	p.Ile28Met	p.I28M	ENST00000371953	NM_000314.4	28	atT/atG					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	56	154	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0007986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	223	311	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112602	115112602	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	107	208	0	ENST00000257566.3:c.1138G>A	p.Glu380Lys	p.E380K	ENST00000257566	NM_016569.3	380	Gag/Aag					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138403607	138403607	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	223	356	0	ENST00000289153.2:c.2175A>T	p.Leu725Phe	p.L725F	ENST00000289153	NM_006219.2	725	ttA/ttT					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116435721	116435721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	260	232	0	ENST00000397752.3:c.3811G>A	p.Val1271Met	p.V1271M	ENST00000397752	NM_000245.2	1271	Gtg/Atg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49415619	49415619	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	122	284	0	ENST00000301067.7:c.16558C>T	p.Gln5520Ter	p.Q5520*	ENST00000301067	NM_003482.3	5520	Cag/Tag					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76907620	76907620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	203	404	4	ENST00000373344.5:c.4541G>A	p.Arg1514Gln	p.R1514Q	ENST00000373344	NM_000489.3	1514	cGa/cAa					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65300283	65300283	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0005976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	378	335	0	ENST00000342505.4:c.3427C>T	p.Gln1143Ter	p.Q1143*	ENST00000342505	NM_002227.2	1143	Cag/Tag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162147	47162147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	323	427	1	ENST00000409792.3:c.3979G>A	p.Val1327Ile	p.V1327I	ENST00000409792	NM_014159.6	1327	Gta/Ata					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140534462	140534462	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0005976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	728	556	0	ENST00000288602.6:c.451T>G	p.Ser151Ala	p.S151A	ENST00000288602	NM_004333.4	151	Tca/Gca					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46244875	46244875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1199	998	823	1	ENST00000334344.6:c.2969C>T	p.Ser990Leu	p.S990L	ENST00000334344	NM_152641.2	990	tCg/tTg					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48010439	48010439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	243	408	1	ENST00000234420.5:c.67G>A	p.Ala23Thr	p.A23T	ENST00000234420	NM_000179.2	23	Gcc/Acc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183811	10183811	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs5030829		P-0006742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	279	301	0	ENST00000256474.2:c.280G>T	p.Glu94Ter	p.E94*	ENST00000256474	NM_000551.3	94	Gag/Tag					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86649021	86649021	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	635	418	0	ENST00000274376.6:c.1301G>A	p.Gly434Glu	p.G434E	ENST00000274376	NM_002890.2	434	gGa/gAa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115109935	115109935	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	132	416	0	ENST00000257566.3:c.1943C>T	p.Pro648Leu	p.P648L	ENST00000257566	NM_016569.3	648	cCg/cTg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123205156	123205156	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0006742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	59	611	0	ENST00000218089.9:c.2516A>C	p.Asp839Ala	p.D839A	ENST00000218089	NM_001042749.1	839	gAt/gCt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123217347	123217347	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	40	590	2	ENST00000218089.9:c.3001G>T	p.Asp1001Tyr	p.D1001Y	ENST00000218089	NM_001042749.1	1001	Gat/Tat					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442529	52442529	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	220	457	0	ENST00000460680.1:c.216del	p.Ile72MetfsTer6	p.I72Mfs*6	ENST00000460680	NM_004656.3	72	atT/at					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0007606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	51	309	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	28	407	0	ENST00000361445.4:c.5930C>A	p.Thr1977Lys	p.T1977K	ENST00000361445	NM_004958.3	1977	aCa/aAa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183797	10183797	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	46	365	0	ENST00000256474.2:c.266T>C	p.Leu89Pro	p.L89P	ENST00000256474	NM_000551.3	89	cTc/cCc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32944548	32944548	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	27	660	0	ENST00000380152.3:c.8341A>G	p.Asn2781Asp	p.N2781D	ENST00000380152		2781	Aac/Gac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	9	508	2	ENST00000269305.4:c.329G>A	p.Arg110His	p.R110H	ENST00000269305	NM_001126112.2	110	cGt/cAt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46242669	46242669	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007606-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	29	488	0	ENST00000334344.6:c.1633del	p.Met545CysfsTer12	p.M545Cfs*12	ENST00000334344	NM_152641.2	544	gAa/ga					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	22	549	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175755	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	14	358	0	ENST00000257430.4:c.4464del	p.Leu1488PhefsTer19	p.L1488Ffs*19	ENST00000257430	NM_000038.5	1488	ttA/tt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	16	319	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	67	445	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128752845	128752845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	76	254	1	ENST00000377970.2:c.1006G>A	p.Ala336Thr	p.A336T	ENST00000377970	NM_002467.4	336	Gct/Act					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624272	89624272	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	51	183	0	ENST00000371953.3:c.46T>G	p.Tyr16Asp	p.Y16D	ENST00000371953	NM_000314.4	16	Tat/Gat					NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40456400	40456400	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	77	877	0	ENST00000345506.4:c.1210G>A	p.Glu404Lys	p.E404K	ENST00000345506	NM_003152.3	404	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579434	7579715	+	splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant	Splice_Site	DEL	GGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCCCTCCAGGTCCCCAGCCCTCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCA	GGGCCGCCGGTGTAGGAGCTGCTGGTGCAGGGGCCACGGGGGGAGCAGCCTCTGGCATTCTGGGAGCTTCATCTGGACCTGGGTCTTCAGTGAACCATTGTTCAATATCGTCCGGGGACAGCATCAAATCATCCATTGCTTGGGACGGCAAGGGGGACTGTAGATGGGTGAAAAGAGCAGTCAGAGGACCAGGTCCTCAGCCCCCCAGCCCCCCAGCCCTCCAGGTCCCCAGCCCTCCAGGTCCCCAGCCCAACCCTTGTCCTTACCAGAACGTTGTTTTCA	-			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	65	412	1	ENST00000269305.4:c.81_253del		p.X27_splice	ENST00000269305	NM_001126112.2	27	ccTGAAAACAACGTTCTGGTAAGGACAAGGGTTGGGCTGGGGACCTGGAGGGCTGGGGACCTGGAGGGCTGGGGGGCTGGGGGGCTGAGGACCTGGTCCTCTGACTGCTCTTTTCACCCATCTACAGTCCCCCTTGCCGTCCCAAGCAATGGATGATTTGATGCTGTCCCCGGACGATATTGAACAATGGTTCACTGAAGACCCAGGTCCAGATGAAGCTCCCAGAATGCCAGAGGCTGCTCCCCCCGTGGCCCCTGCACCAGCAGCTCCTACACCGGCGGCCCct/ccct					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114710571	114710574	+	frameshift_variant	Frame_Shift_Del	DEL	TTTC	TTTC	-			P-0008727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	298	1070	0	ENST00000543371.1:c.56_59del	p.Ile19ThrfsTer22	p.I19Tfs*22	ENST00000543371	NM_001198531.1	19	aTTTCc/ac					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41565575	41565575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	271	531	0	ENST00000263253.7:c.4241A>G	p.Tyr1414Cys	p.Y1414C	ENST00000263253	NM_001429.3	1414	tAt/tGt					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206666653	206666653	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	255	501	2	ENST00000367120.3:c.1987G>T	p.Ala663Ser	p.A663S	ENST00000367120	NM_014002.3	663	Gcc/Tcc					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241672049	241672049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	206	284	0	ENST00000366560.3:c.592G>A	p.Ala198Thr	p.A198T	ENST00000366560	NM_000143.3	198	Gct/Act					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32187927	32187927	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	172	422	0	ENST00000375023.3:c.1294G>A	p.Asp432Asn	p.D432N	ENST00000375023	NM_004557.3	432	Gac/Aac					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	112041068	112041068	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs62620251		P-0007427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	450	756	0	ENST00000368678.4:c.187G>A	p.Val63Ile	p.V63I	ENST00000368678		63	Gtc/Atc					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36846872	36846872	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	122	479	0	ENST00000358127.4:c.1067A>T	p.Asp356Val	p.D356V	ENST00000358127	NM_001280556.1	356	gAc/gTc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100321	8100321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	298	543	2	ENST00000346208.3:c.295G>A	p.Gly99Ser	p.G99S	ENST00000346208		99	Ggc/Agc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405440	70405440	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	291	470	1	ENST00000373644.4:c.2954C>T	p.Ala985Val	p.A985V	ENST00000373644	NM_030625.2	985	gCt/gTt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3789606	3789606	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	158	533	0	ENST00000262367.5:c.4253G>T	p.Gly1418Val	p.G1418V	ENST00000262367	NM_004380.2	1418	gGc/gTc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3832817	3832817	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	294	426	0	ENST00000262367.5:c.1441A>G	p.Met481Val	p.M481V	ENST00000262367	NM_004380.2	481	Atg/Gtg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578224	7578224	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0007427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	299	599	0	ENST00000269305.4:c.625A>T	p.Arg209Ter	p.R209*	ENST00000269305	NM_001126112.2	209	Aga/Tga					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29676149	29676149	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	195	304	0	ENST00000358273.4:c.7201C>T	p.Pro2401Ser	p.P2401S	ENST00000358273	NM_001042492.2	2401	Cct/Tct					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954378	48954378	+	splice_donor_variant	Splice_Site	DEL	G	G	-			P-0007427-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	137	348	0	ENST00000267163.4:c.1498+1delG		p.X500_splice	ENST00000267163	NM_000321.2	500						NEWRECORD																																																																									
H3F3A	0	MSKCC	GRCh37	1	226253377	226253377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	60	319	0	ENST00000366813.1:c.149G>A	p.Arg50His	p.R50H	ENST00000366813		50	cGt/cAt					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49924822	49924822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202007332		P-0006750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	140	992	2	ENST00000296474.3:c.4121G>A	p.Arg1374His	p.R1374H	ENST00000296474	NM_002447.2	1374	cGt/cAt					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14029336	14029336	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	100	709	2	ENST00000311895.7:c.1547G>A	p.Arg516Gln	p.R516Q	ENST00000311895	NM_005236.2	516	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577043	7577489	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAGTAAGGAGATTCCCCGCCGGGGATGTGATGAGAGGTGGATGGGTAGTAGTATGGAAGAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTG	GCTCGTGGTGAGGCTCCCCTTTCTTGCGGAGATTCTCTTCCTCTGTGCGCCGGTCTCTCCCAGGACAGGCACAAACACGCACCTCAAAGCTGTTCCGTCCCAGTAGATTACCACTACTCAGGATAGGAAAAGAGAAGCAAGAGGCAGTAAGGAAATCAGGTCCTACCTGTCCCATTTAAAAAACCAGGCTCCATCTACTCCCAACCACCCTTGTCCTTTCTGGAGCCTAAGCTCCAGCTCCAGGTAGGTGGAGGAGAAGCCACAGGTTAAGAGGTCCCAAAGCCAGAGAAAAGAAAACTGAGTGGGAGCAGTAAGGAGATTCCCCGCCGGGGATGTGATGAGAGGTGGATGGGTAGTAGTATGGAAGAAATCGGTAAGAGGTGGGCCCAGGGGTCAGAGGCAAGCAGAGGCTGGGGCACAGCAGGCCAGTGTGCAGGGTGGCAAGTG	-			P-0006750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	70	520	0	ENST00000269305.4:c.782+10_895del		p.X261_splice	ENST00000269305	NM_001126112.2	261						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174171	112174171	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0006750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	130	616	0	ENST00000257430.4:c.2882del	p.Asn961MetfsTer4	p.N961Mfs*4	ENST00000257430	NM_000038.5	960	tcA/tc					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225378306	225378306	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	131	413	0	ENST00000264414.4:c.589G>A	p.Gly197Arg	p.G197R	ENST00000264414	NM_003590.4	197	Gga/Aga					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0008360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	316	406	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	462	424	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48934152	48934152	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0008360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	234	324	0	ENST00000267163.4:c.608-1G>A		p.X203_splice	ENST00000267163	NM_000321.2	203						NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944422	40944422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	524	650	0	ENST00000373198.4:c.2080C>T	p.Pro694Ser	p.P694S	ENST00000373198	NM_133170.3	694	Cct/Tct					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71247417	71247417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	253	391	0	ENST00000318789.4:c.116G>A	p.Gly39Glu	p.G39E	ENST00000318789	NM_032682.5	39	gGa/gAa					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6026436	6026436	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	78	107	0	ENST00000265849.7:c.1960C>T	p.Pro654Ser	p.P654S	ENST00000265849	NM_000535.5	654	Cct/Tct					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123276938	123276938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0008360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	338	451	0	ENST00000358487.5:c.979C>T	p.Leu327Phe	p.L327F	ENST00000358487	NM_000141.4	327	Ctc/Ttc					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56414868	56414868	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	229	933	0	ENST00000348428.3:c.2269T>A	p.Phe757Ile	p.F757I	ENST00000348428	NM_006785.3	757	Ttc/Atc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039506	49039506	+	splice_donor_variant	Splice_Site	DEL	T	T	-			P-0008360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	168	506	0	ENST00000267163.4:c.2489+2del		p.X830_splice	ENST00000267163	NM_000321.2	830						NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692776	89692785	+	frameshift_variant	Frame_Shift_Del	DEL	AATATCCTTT	AATATCCTTT	-			P-0008360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	193	326	2	ENST00000371953.3:c.260_269del	p.Gln87LeufsTer9	p.Q87Lfs*9	ENST00000371953	NM_000314.4	87	cAATATCCTTTt/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	121	446	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577079	7577079	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009322-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	113	448	0	ENST00000269305.4:c.859G>C	p.Glu287Gln	p.E287Q	ENST00000269305	NM_001126112.2	287	Gag/Cag					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	105	334	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039501	49039501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	259	376	0	ENST00000267163.4:c.2486C>T	p.Ser829Leu	p.S829L	ENST00000267163	NM_000321.2	829	tCa/tTa					NEWRECORD																																																																									
IDH2	0	MSKCC	GRCh37	15	90633720	90633720	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	146	367	0	ENST00000330062.3:c.364C>T	p.Arg122Cys	p.R122C	ENST00000330062	NM_002168.2	122	Cgt/Tgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	391	325	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
CD274	0	MSKCC	GRCh37	9	5466794	5466794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	450	586	0	ENST00000381577.3:c.815G>A	p.Cys272Tyr	p.C272Y	ENST00000381577	NM_014143.3	272	tGt/tAt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9862762	9862762	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	1406	611	0	ENST00000330684.3:c.2541C>G	p.Phe847Leu	p.F847L	ENST00000330684	NM_001134407.1	847	ttC/ttG					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41251790	41251790	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0005584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	440	495	0	ENST00000357654.3:c.547+2T>A		p.X183_splice	ENST00000357654	NM_007294.3	183						NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31021418	31021418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	347	299	1	ENST00000375687.4:c.1417G>A	p.Ala473Thr	p.A473T	ENST00000375687	NM_015338.5	473	Gca/Aca					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941658	48941682	+	frameshift_variant	Frame_Shift_Del	DEL	AAATTTATCTTAAAAATAAAGATCT	AAATTTATCTTAAAAATAAAGATCT	-			P-0005584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	247	374	1	ENST00000267163.4:c.969_993del	p.Ile324MetfsTer17	p.I324Mfs*17	ENST00000267163	NM_000321.2	323	gAAATTTATCTTAAAAATAAAGATCTa/ga					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29664455	29664503	+	frameshift_variant	Frame_Shift_Del	DEL	GCATTAGCAAAGTCAAGTCAGCTGCTGTCATTGCCTTCCGTTCCAGTTA	GCATTAGCAAAGTCAAGTCAGCTGCTGTCATTGCCTTCCGTTCCAGTTA	CT			P-0005584-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	307	422	0	ENST00000358273.4:c.6497_6545delinsCT	p.Gly2166AlafsTer12	p.G2166Afs*12	ENST00000358273	NM_001042492.2	2166	gGCATTAGCAAAGTCAAGTCAGCTGCTGTCATTGCCTTCCGTTCCAGTTAc/gCTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	177	235	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	242	400	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	84	371	4	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	39	239	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72076805	72076805	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	91	389	0	ENST00000357731.5:c.692A>C	p.Lys231Thr	p.K231T	ENST00000357731	NM_173808.2	231	aAa/aCa					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220440102	220440102	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	72	632	0	ENST00000243786.2:c.955T>G	p.Ser319Ala	p.S319A	ENST00000243786	NM_002191.3	319	Tcc/Gcc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2226370	2226370	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	74	366	0	ENST00000398665.3:c.3850G>C	p.Ala1284Pro	p.A1284P	ENST00000398665	NM_032482.2	1284	Gcc/Ccc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931285	66931285	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	219	340	0	ENST00000374690.3:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000374690	NM_000044.3	643	Gaa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0008719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	41	351	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30067836	30067836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	98	228	0	ENST00000338641.4:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000338641	NM_000268.3	341	Cga/Tga					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0004066-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			827	87	622	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004066-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			804	94	550	0	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577544	7577544	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0004066-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			842	67	606	0	ENST00000269305.4:c.737T>A	p.Met246Lys	p.M246K	ENST00000269305	NM_001126112.2	246	aTg/aAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579374	7579374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			81	29	124	0	ENST00000269305.4:c.313G>T	p.Gly105Cys	p.G105C	ENST00000269305	NM_001126112.2	105	Ggc/Tgc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			129	61	198	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38947422	38947422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	17	256	0	ENST00000357387.3:c.4258G>A	p.Gly1420Ser	p.G1420S	ENST00000357387	NM_152756.3	1420	Ggt/Agt					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94067998	94067998	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	12	345	0	ENST00000369303.4:c.964G>T	p.Asp322Tyr	p.D322Y	ENST00000369303	NM_004440.3	322	Gac/Tac					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50468274	50468274	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	11	150	0	ENST00000331340.3:c.1509C>A	p.Tyr503Ter	p.Y503*	ENST00000331340	NM_006060.4	503	taC/taA					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36988508	36988508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	38	189	0	ENST00000354822.5:c.145C>A	p.Pro49Thr	p.P49T	ENST00000354822	NM_001079668.2	49	Ccc/Acc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44918677	44918677	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	19	241	0	ENST00000377967.4:c.1160C>G	p.Thr387Ser	p.T387S	ENST00000377967	NM_021140.2	387	aCc/aGc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	712	286	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	166	354	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66535456	66535456	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	26	100	0	ENST00000273854.3:c.5G>T	p.Arg2Leu	p.R2L	ENST00000273854	NM_004439.5	2	cGg/cTg					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	427495	427495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	215	407	0	ENST00000399788.2:c.2674C>T	p.Pro892Ser	p.P892S	ENST00000399788	NM_001042603.1	892	Cca/Tca					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86679538	86679538	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	99	233	0	ENST00000274376.6:c.2703delT	p.Leu902PhefsTer9	p.L902Ffs*9	ENST00000274376	NM_002890.2	900	gTt/gt					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63810726	63810728	+	inframe_deletion	In_Frame_Del	DEL	CAA	CAA	-			P-0009501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	91	280	0	ENST00000279873.7:c.819_821del	p.Asn274del	p.N274del	ENST00000279873	NM_032199.2	271	tcCAAc/tcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	23	342	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0009437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	35	485	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371962	55371962	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	10	115	0	ENST00000297316.4:c.652C>A	p.Pro218Thr	p.P218T	ENST00000297316	NM_022454.3	218	Ccg/Acg					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741800	145741800	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	134	417	0	ENST00000428558.2:c.703C>G	p.Gln235Glu	p.Q235E	ENST00000428558	NM_004260.3	235	Cag/Gag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72984817	72984817	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	87	566	0	ENST00000268489.5:c.2767G>T	p.Val923Leu	p.V923L	ENST00000268489	NM_006885.3	923	Gtg/Ttg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	114	311	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	185	415	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89499462	89499462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	340	451	0	ENST00000336596.2:c.2632C>A	p.Leu878Met	p.L878M	ENST00000336596	NM_005233.5	878	Ctg/Atg					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370910	55370910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	569	448	0	ENST00000297316.4:c.212C>T	p.Pro71Leu	p.P71L	ENST00000297316	NM_022454.3	71	cCg/cTg					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121437341	121437341	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	125	408	0	ENST00000257555.6:c.1679C>G	p.Ser560Cys	p.S560C	ENST00000257555		560	tCt/tGt					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37879580	37879580	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	139	362	1	ENST00000269571.5:c.1955C>T	p.Thr652Met	p.T652M	ENST00000269571		652	aCg/aTg					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45423004	45423004	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	311	463	0	ENST00000262160.6:c.124G>C	p.Glu42Gln	p.E42Q	ENST00000262160	NM_005901.5	42	Gag/Cag					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245855	46245855	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	336	468	0	ENST00000334344.6:c.3950del	p.Asn1317IlefsTer5	p.N1317Ifs*5	ENST00000334344	NM_152641.2	1317	Aat/at					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114920430	114920430	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0007169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	273	590	0	ENST00000543371.1:c.1373del	p.Leu458TyrfsTer33	p.L458Yfs*33	ENST00000543371	NM_001198531.1	457	acT/ac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	306	305	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579442	7579442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	31	273	0	ENST00000269305.4:c.245C>T	p.Pro82Leu	p.P82L	ENST00000269305	NM_001126112.2	82	cCg/cTg					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65344771	65344771	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0007871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	171	344	0	ENST00000342505.4:c.266A>C	p.Tyr89Ser	p.Y89S	ENST00000342505	NM_002227.2	89	tAt/tCt					NEWRECORD																																																																									
CXCR4	0	MSKCC	GRCh37	2	136873466	136873466	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	192	699	0	ENST00000241393.3:c.32A>G	p.Asn11Ser	p.N11S	ENST00000241393	NM_003467.2	11	aAc/aGc					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39751884	39751884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	173	416	2	ENST00000361337.2:c.2245C>T	p.Arg749Trp	p.R749W	ENST00000361337	NM_003286.2	749	Cgg/Tgg					NEWRECORD																																																																									
SRSF2	0	MSKCC	GRCh37	17	74732401	74732410	+	frameshift_variant	Frame_Shift_Del	DEL	TGGACCTTCG	TGGACCTTCG	-			P-0007871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1347	880	585	0	ENST00000359995.5:c.499_508del	p.Arg167SerfsTer62	p.R167Sfs*62	ENST00000359995	NM_001195427.1	167	CGAAGGTCCAag/ag					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101908866	101908882	+	protein_altering_variant	In_Frame_Del	DEL	AATTGCTCGACGATGTT	AATTGCTCGACGATGTT	TA			P-0007871-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	120	367	0	ENST00000374994.4:c.1230_1246delinsTA	p.Glu410_Ser416delinsAspThr	p.E410_S416delinsDT	ENST00000374994	NM_004612.2	410	gaAATTGCTCGACGATGTTcc/gaTAcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	241	419	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0007214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	348	583	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0007214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	106	373	0	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0007214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	239	410	1	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81960734	81960734	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0007214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1556	189	740	0	ENST00000359376.3:c.2465A>C	p.Asn822Thr	p.N822T	ENST00000359376	NM_002661.3	822	aAc/aCc					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38508234	38508234	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	148	579	0	ENST00000254066.5:c.542C>T	p.Thr181Met	p.T181M	ENST00000254066	NM_000964.3	181	aCg/aTg					NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0006873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	10	26	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-					NEWRECORD																																																																									
NFKBIA	0	MSKCC	GRCh37	14	35872450	35872450	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0006873-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1822	114	476	0	ENST00000216797.5:c.453del	p.Cys152ValfsTer12	p.C152Vfs*12	ENST00000216797	NM_020529.2	151	gcC/gc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0007320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	481	348	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94180459	94180459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1307	260	611	0	ENST00000323929.3:c.1709G>A	p.Arg570Lys	p.R570K	ENST00000323929	NM_005591.3	570	aGa/aAa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0007320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	207	503	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc					NEWRECORD																																																																									
HIST1H3J	0	MSKCC	GRCh37	6	27858513	27858513	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0007320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1535	153	794	3	ENST00000359303.2:c.58C>T	p.Gln20Ter	p.Q20*	ENST00000359303	NM_003535.2	20	Cag/Tag					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32184818	32184818	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0007320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	154	338	0	ENST00000375023.3:c.1765G>T	p.Glu589Ter	p.E589*	ENST00000375023	NM_004557.3	589	Gag/Tag					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88423617	88423617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	90	403	0	ENST00000360948.2:c.2218G>A	p.Glu740Lys	p.E740K	ENST00000360948	NM_001012338.2	740	Gaa/Aaa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441201	52441201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	185	581	2	ENST00000460680.1:c.569C>A	p.Pro190His	p.P190H	ENST00000460680	NM_004656.3	190	cCc/cAc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391577	139391577	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	451	733	1	ENST00000277541.6:c.6614C>A	p.Ser2205Ter	p.S2205*	ENST00000277541	NM_017617.3	2205	tCa/tAa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044735	47044735	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	242	711	0	ENST00000329236.7:c.1901A>T	p.Asp634Val	p.D634V	ENST00000329236	NM_001204466.1	634	gAt/gTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0007133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	84	379	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936092	178936092	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	13	283	0	ENST00000263967.3:c.1634A>G	p.Glu545Gly	p.E545G	ENST00000263967	NM_006218.2	545	gAg/gGg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993095	72993095	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0007133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	86	789	0	ENST00000268489.5:c.950T>A	p.Leu317His	p.L317H	ENST00000268489	NM_006885.3	317	cTt/cAt					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54945698	54945698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	26	189	0	ENST00000312783.6:c.872G>A	p.Gly291Asp	p.G291D	ENST00000312783	NM_198436.1	291	gGc/gAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175749	112175756	+	frameshift_variant	Frame_Shift_Del	DEL	TACTTTAT	TACTTTAT	-			P-0007133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	47	365	0	ENST00000257430.4:c.4461_4468delTTTATTAC	p.Leu1488PhefsTer23	p.L1488Ffs*23	ENST00000257430	NM_000038.5	1486	gaTACTTTATta/gata					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	48	280	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	56	282	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	55	223	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138665101	138665101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	36	98	0	ENST00000330315.3:c.464C>T	p.Pro155Leu	p.P155L	ENST00000330315	NM_023067.3	155	cCg/cTg					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32421519	32421519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	45	252	2	ENST00000332351.3:c.1073C>T	p.Thr358Met	p.T358M	ENST00000332351	NM_024426.4	358	aCg/aTg					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37880998	37880998	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	73	434	0	ENST00000269571.5:c.2327G>T	p.Gly776Val	p.G776V	ENST00000269571		776	gGt/gTt					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42799177	42799177	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006686-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	22	159	0	ENST00000575354.2:c.4661C>A	p.Ala1554Glu	p.A1554E	ENST00000575354	NM_015125.3	1554	gCa/gAa					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42058477	42058477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013573-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	11	1272	4	ENST00000219905.7:c.8197G>A	p.Val2733Ile	p.V2733I	ENST00000219905	NM_001164273.1	2733	Gtt/Att					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741637	17741637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	87	130	0	ENST00000250003.3:c.308G>A	p.Arg103His	p.R103H	ENST00000250003	NM_002478.4	103	cGc/cAc					NEWRECORD																																																																									
CDKN2C	0	MSKCC	GRCh37	1	51439659	51439659	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	260	511	0	ENST00000262662.1:c.224A>G	p.His75Arg	p.H75R	ENST00000262662		75	cAt/cGt					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89350416	89350416	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	570	1105	0	ENST00000301030.4:c.2534T>A	p.Leu845Ter	p.L845*	ENST00000301030	NM_001256183.1	845	tTg/tAg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8636766	8636766	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013697-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	256	398	0	ENST00000356435.5:c.143C>T	p.Thr48Met	p.T48M	ENST00000356435		48	aCg/aTg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9525114	9525114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	105	473	0	ENST00000353224.5:c.1771G>T	p.Ala591Ser	p.A591S	ENST00000353224	NM_177990.2	591	Gct/Tct					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0010637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	174	248	0	ENST00000397752.3:c.3028+1del		p.D1010fs	ENST00000397752	NM_000245.2	1010	Gat/at					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66361214	66361214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	97	363	0	ENST00000273854.3:c.958G>T	p.Gly320Cys	p.G320C	ENST00000273854	NM_004439.5	320	Ggc/Tgc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68867309	68867309	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	156	424	2	ENST00000261769.5:c.2556G>T	p.Glu852Asp	p.E852D	ENST00000261769	NM_004360.3	852	gaG/gaT					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039904	47039904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0010637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	159	168	2	ENST00000329236.7:c.1013A>T	p.Gln338Leu	p.Q338L	ENST00000329236	NM_001204466.1	338	cAg/cTg					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116380944	116380958	+	inframe_deletion	In_Frame_Del	DEL	TTTCCAGTCCTGCAG	TTTCCAGTCCTGCAG	-			P-0010637-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	108	496	0	ENST00000397752.3:c.1567_1581del	p.Phe523_Ser527del	p.F523_S527del	ENST00000397752	NM_000245.2	522	caTTTCCAGTCCTGCAGt/cat					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115258745	115258745	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121434595		P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	424	465	0	ENST00000369535.4:c.37G>C	p.Gly13Arg	p.G13R	ENST00000369535	NM_002524.4	13	Ggt/Cgt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	722	983	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	722	983	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085647	16085647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			510	265	717	0	ENST00000281043.3:c.823G>A	p.Glu275Lys	p.E275K	ENST00000281043	NM_005378.4	275	Gaa/Aaa					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28589333	28589333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	105	480	0	ENST00000241453.7:c.2714G>A	p.Gly905Glu	p.G905E	ENST00000241453	NM_004119.2	905	gGa/gAa					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			408	119	811	2				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71026984	71026984	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	249	476	1	ENST00000318789.4:c.1343C>T	p.Ser448Leu	p.S448L	ENST00000318789	NM_032682.5	448	tCg/tTg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41076902	41076902	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	221	591	0	ENST00000373198.4:c.1518G>A	p.Trp506Ter	p.W506*	ENST00000373198	NM_133170.3	506	tgG/tgA					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858493	9858493	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	218	534	1	ENST00000330684.3:c.2908C>T	p.Arg970Trp	p.R970W	ENST00000330684	NM_001134407.1	970	Cgg/Tgg					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048115	180048115	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	171	919	0	ENST00000261937.6:c.2158G>A	p.Glu720Lys	p.E720K	ENST00000261937	NM_182925.4	720	Gaa/Aaa					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18716359	18716359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	192	486	0	ENST00000266497.5:c.3706G>A	p.Glu1236Lys	p.E1236K	ENST00000266497		1236	Gaa/Aaa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88476264	88476264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	137	791	1	ENST00000360948.2:c.1868G>A	p.Gly623Glu	p.G623E	ENST00000360948	NM_001012338.2	623	gGa/gAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579699	7579700	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	324	807	1	ENST00000269305.4:c.96_96+1delinsAA		p.X32_splice	ENST00000269305	NM_001126112.2	32						NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45394753	45394753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	150	471	1	ENST00000262160.6:c.596C>T	p.Ser199Phe	p.S199F	ENST00000262160	NM_005901.5	199	tCc/tTc					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128204786	128204786	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	304	1383	2	ENST00000341105.2:c.655G>A	p.Glu219Lys	p.E219K	ENST00000341105	NM_032638.4	219	Gag/Aag					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55156616	55156616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	307	611	0	ENST00000257290.5:c.3017G>C	p.Gly1006Ala	p.G1006A	ENST00000257290	NM_006206.4	1006	gGt/gCt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55953871	55953871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	128	537	0	ENST00000263923.4:c.3565G>A	p.Asp1189Asn	p.D1189N	ENST00000263923	NM_002253.2	1189	Gat/Aat					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55981536	55981536	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			684	116	463	0	ENST00000263923.4:c.401G>A	p.Gly134Glu	p.G134E	ENST00000263923	NM_002253.2	134	gGa/gAa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157454228	157454228	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	133	565	0	ENST00000346085.5:c.2438C>T	p.Ser813Phe	p.S813F	ENST00000346085	NM_020732.3	813	tCc/tTc					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467781	50467781	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	197	520	0	ENST00000331340.3:c.1016A>T	p.Glu339Val	p.E339V	ENST00000331340	NM_006060.4	339	gAg/gTg					NEWRECORD																																																																									
CDK6	0	MSKCC	GRCh37	7	92247496	92247496	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	288	331	1	ENST00000265734.4:c.724G>T	p.Asp242Tyr	p.D242Y	ENST00000265734	NM_001259.6	242	Gac/Tac					NEWRECORD																																																																									
DUSP4	0	MSKCC	GRCh37	8	29207651	29207651	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	115	974	0	ENST00000240100.2:c.145G>A	p.Asp49Asn	p.D49N	ENST00000240100	NM_001394.6	49	Gac/Aac					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8528612	8528612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014208-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	292	410	0	ENST00000356435.5:c.520C>T	p.Arg174Cys	p.R174C	ENST00000356435		174	Cgt/Tgt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	54	459	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	112	405	1	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36937194	36937194	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1587	104	1051	0	ENST00000361632.4:c.1125G>C	p.Trp375Cys	p.W375C	ENST00000361632		375	tgG/tgC					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55238870	55238870	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	77	563	0	ENST00000275493.2:c.1883G>A	p.Cys628Tyr	p.C628Y	ENST00000275493	NM_005228.3	628	tGc/tAc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55273014	55273014	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	61	491	1	ENST00000275493.2:c.3337C>T	p.Gln1113Ter	p.Q1113*	ENST00000275493	NM_005228.3	1113	Cag/Tag					NEWRECORD																																																																									
LMO1	0	MSKCC	GRCh37	11	8246257	8246257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	55	467	0	ENST00000335790.3:c.377G>C	p.Gly126Ala	p.G126A	ENST00000335790	NM_002315.2	126	gGa/gCa					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562199	21562199	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1584	101	1078	0	ENST00000382592.4:c.1720C>T	p.Gln574Ter	p.Q574*	ENST00000382592	NM_014572.2	574	Cag/Tag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914679	32914679	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1687	105	1140	1	ENST00000380152.3:c.6187G>A	p.Gly2063Arg	p.G2063R	ENST00000380152		2063	Gga/Aga					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49050843	49050843	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012888-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	26	216	1	ENST00000267163.4:c.2527G>C	p.Glu843Gln	p.E843Q	ENST00000267163	NM_000321.2	843	Gag/Cag					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0013859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	196	763	2	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	189	659	1	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag					NEWRECORD																																																																									
RIT1	0	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	38	540	0	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602878	10602878	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	199	619	0	ENST00000171111.5:c.700C>T	p.Arg234Trp	p.R234W	ENST00000171111	NM_203500.1	234	Cgg/Tgg					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12632388	12632388	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	178	775	0	ENST00000251849.4:c.1279A>G	p.Ser427Gly	p.S427G	ENST00000251849	NM_002880.3	427	Agc/Ggc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	18	424	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577095	7577095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	37	561	0	ENST00000269305.4:c.843C>G	p.Asp281Glu	p.D281E	ENST00000269305	NM_001126112.2	281	gaC/gaG					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045116	47045116	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0010375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	79	334	0	ENST00000329236.7:c.2126del	p.Asn709ThrfsTer15	p.N709Tfs*15	ENST00000329236	NM_001204466.1	708	cAa/ca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	173	491	1	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88676911	88676911	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	60	328	0	ENST00000372037.3:c.696A>T	p.Lys232Asn	p.K232N	ENST00000372037	NM_004329.2	232	aaA/aaT					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56495627	56495627	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	120	461	0	ENST00000267101.3:c.3821del	p.Gly1274ValfsTer19	p.G1274Vfs*19	ENST00000267101	NM_001982.3	1273	Ggg/gg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9520237	9520237	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	139	486	0	ENST00000353224.5:c.2032G>C	p.Asp678His	p.D678H	ENST00000353224	NM_177990.2	678	Gac/Cac					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47129716	47129716	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	79	499	0	ENST00000409792.3:c.5164C>G	p.Leu1722Val	p.L1722V	ENST00000409792	NM_014159.6	1722	Ctg/Gtg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117663590	117663590	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	57	529	0	ENST00000368508.3:c.4642G>C	p.Glu1548Gln	p.E1548Q	ENST00000368508	NM_002944.2	1548	Gag/Cag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108214053	108214053	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			271	298	447	0	ENST00000278616.4:c.8373C>G	p.Tyr2791Ter	p.Y2791*	ENST00000278616	NM_000051.3	2791	taC/taG					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2126588	2126593	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TACGGC	TACGGC	-			P-0014327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			369	334	672	0	ENST00000219476.3:c.2837+2_2837+7delTACGGC		p.X946_splice	ENST00000219476	NM_000548.3	946						NEWRECORD																																																																									
EPAS1	0	MSKCC	GRCh37	2	46574055	46574055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	436	724	1	ENST00000263734.3:c.70C>T	p.Arg24Trp	p.R24W	ENST00000263734	NM_001430.4	24	Cgg/Tgg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41513455	41513455	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014327-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	431	624	0	ENST00000263253.7:c.359G>A	p.Ser120Asn	p.S120N	ENST00000263253	NM_001429.3	120	aGc/aAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0014706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	249	582	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	251	587	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40481787	40481787	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014706-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	71	466	0	ENST00000264657.5:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000264657	NM_139276.2	373	Ggg/Agg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0010835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	106	436	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	217	629	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	86	627	2	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70451077	70451077	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	118	481	0	ENST00000373644.4:c.5917G>A	p.Glu1973Lys	p.E1973K	ENST00000373644	NM_030625.2	1973	Gaa/Aaa					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118166212	118166212	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	58	459	0	ENST00000369448.3:c.722G>T	p.Gly241Val	p.G241V	ENST00000369448	NM_017709.3	241	gGc/gTc					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89858899	89858899	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010835-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	159	445	0	ENST00000389301.3:c.1063C>T	p.Leu355Phe	p.L355F	ENST00000389301	NM_000135.2	355	Ctc/Ttc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931463	66931463	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			2683	995	308	0	ENST00000374690.3:c.2105T>A	p.Leu702His	p.L702H	ENST00000374690	NM_000044.3	702	cTc/cAc					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49405953	49405953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	535	595	1	ENST00000418115.1:c.185G>A	p.Gly62Glu	p.G62E	ENST00000418115	NM_001664.2	62	gGg/gAg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1362	464	521	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061274	38061274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	562	611	0	ENST00000250448.2:c.715G>A	p.Gly239Ser	p.G239S	ENST00000250448	NM_004496.3	239	Ggc/Agc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134884849	134884849	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			912	1097	345	0	ENST00000398015.3:c.1625T>C	p.Ile542Thr	p.I542T	ENST00000398015	NM_004441.4	542	aTt/aCt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112128203	112128206	+	frameshift_variant	Frame_Shift_Del	DEL	CAGT	CAGT	-			P-0014408-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			235	370	460	0	ENST00000257430.4:c.707_710del	p.Gln236ProfsTer56	p.Q236Pfs*56	ENST00000257430	NM_000038.5	236	CAGTcc/cc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013273-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			565	44	649	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986638	36986639	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0013273-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			54	10	141	0	ENST00000354822.5:c.1050_1051del	p.Gln350HisfsTer88	p.Q350Hfs*88	ENST00000354822	NM_001079668.2	350	caGCca/caca					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99465433	99465433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013273-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			653	51	706	1	ENST00000268035.6:c.2258G>A	p.Arg753Gln	p.R753Q	ENST00000268035	NM_000875.3	753	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	89	738	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct					NEWRECORD																																																																									
RECQL	0	MSKCC	GRCh37	12	21639513	21639513	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150306543		P-0014806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	43	360	1	ENST00000421138.2:c.401C>T	p.Thr134Ile	p.T134I	ENST00000421138		134	aCa/aTa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039504	49039504	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	54	483	0	ENST00000267163.4:c.2489G>A	p.Arg830Lys	p.R830K	ENST00000267163	NM_000321.2	830	aGa/aAa					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7267449	7267449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	64	493	0	ENST00000302850.5:c.559C>T	p.Pro187Ser	p.P187S	ENST00000302850	NM_000208.2	187	Ccg/Tcg					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16082471	16082471	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	61	740	0	ENST00000281043.3:c.285C>A	p.Asp95Glu	p.D95E	ENST00000281043	NM_005378.4	95	gaC/gaA					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32180996	32180996	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014806-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	52	663	0	ENST00000375023.3:c.2354G>T	p.Arg785Met	p.R785M	ENST00000375023	NM_004557.3	785	aGg/aTg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115729	8115729	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	140	415	1	ENST00000346208.3:c.1075G>T	p.Glu359Ter	p.E359*	ENST00000346208		359	Gaa/Taa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060779	38060779	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1684	178	849	0	ENST00000250448.2:c.1210A>G	p.Asn404Asp	p.N404D	ENST00000250448	NM_004496.3	404	Aac/Gac					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90982767	90982767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014463-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	145	309	2	ENST00000265433.3:c.721G>A	p.Ala241Thr	p.A241T	ENST00000265433	NM_002485.4	241	Gca/Aca					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111886081	111886081	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199803113		P-0010830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	375	1213	0	ENST00000341259.2:c.1703T>C	p.Ile568Thr	p.I568T	ENST00000341259	NM_005475.2	568	aTa/aCa					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3900489	3900489	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	302	851	0	ENST00000262367.5:c.607C>T	p.Gln203Ter	p.Q203*	ENST00000262367	NM_004380.2	203	Caa/Taa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76845366	76845366	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	177	708	0	ENST00000373344.5:c.6155A>T	p.Asp2052Val	p.D2052V	ENST00000373344	NM_000489.3	2052	gAt/gTt					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575106	64575107	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0010830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	276	528	0	ENST00000337652.1:c.715_716del	p.Met239GlyfsTer14	p.M239Gfs*14	ENST00000337652	NM_130803.2	239	ATg/g					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105242111	105242111	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	318	717	0	ENST00000349310.3:c.313A>G	p.Thr105Ala	p.T105A	ENST00000349310	NM_001014432.1	105	Act/Gct					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5089816	5089816	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014679-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	218	517	1	ENST00000381652.3:c.2714T>G	p.Leu905Arg	p.L905R	ENST00000381652	NM_004972.3	905	cTa/cGa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55144146	55144146	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010175-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			222	96	417	0	ENST00000257290.5:c.1975A>T	p.Asn659Tyr	p.N659Y	ENST00000257290	NM_006206.4	659	Aac/Tac					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93969158	93969158	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010175-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			650	133	806	2	ENST00000369303.4:c.1838C>A	p.Thr613Asn	p.T613N	ENST00000369303	NM_004440.3	613	aCc/aAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	325	700	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25966966	25966966	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	154	644	0	ENST00000435504.4:c.2240G>T	p.Gly747Val	p.G747V	ENST00000435504		747	gGt/gTt					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99155411	99155411	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	151	602	3	ENST00000074304.5:c.637G>A	p.Ala213Thr	p.A213T	ENST00000074304	NM_001134224.1	213	Gct/Act					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15288529	15288529	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	77	153	0	ENST00000263388.2:c.4210G>C	p.Glu1404Gln	p.E1404Q	ENST00000263388	NM_000435.2	1404	Gag/Cag					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33792285	33792285	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013051-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	150	655	1	ENST00000498907.2:c.1036C>T	p.Pro346Ser	p.P346S	ENST00000498907	NM_004364.3	346	Cca/Tca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013522-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			205	15	652	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013522-T04-IM6									Unknown	SOMATIC				MSK-IMPACT			580	35	724	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	99	567	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	69	681	0	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380264	25380264	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	115	578	0	ENST00000256078.4:c.194G>A	p.Ser65Asn	p.S65N	ENST00000256078	NM_033360.2	65	aGt/aAt					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41245846	41245846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010854-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	52	535	0	ENST00000357654.3:c.1702C>A	p.Pro568Thr	p.P568T	ENST00000357654	NM_007294.3	568	Cct/Act					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593588	55593599	+	inframe_deletion	In_Frame_Del	DEL	ATGTATGAAGTA	ATGTATGAAGTA	-			P-0012185-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	272	611	0	ENST00000288135.5:c.1654_1665del	p.Met552_Val555del	p.M552_V555del	ENST00000288135	NM_000222.2	552	ATGTATGAAGTA/-					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589623	67589634	+	inframe_deletion	In_Frame_Del	DEL	ATATGATAGATT	ATATGATAGATT	-			P-0014598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			272	96	403	0	ENST00000274335.5:c.1392_1403delTAGATTATATGA	p.Asp464_Tyr467del	p.D464_Y467del	ENST00000274335		462	gaATATGATAGATTa/gaa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49426061	49426061	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	300	748	0	ENST00000301067.7:c.12427del	p.Asp4143IlefsTer6	p.D4143Ifs*6	ENST00000301067	NM_003482.3	4143	Gat/at					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3830841	3830841	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014598-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	249	648	0	ENST00000262367.5:c.1715G>T	p.Gly572Val	p.G572V	ENST00000262367	NM_004380.2	572	gGa/gTa					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	70	575	0	ENST00000369535.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000369535	NM_002524.4	12	Ggt/Cgt					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63852428	63852428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	89	610	0	ENST00000279873.7:c.3206A>G	p.His1069Arg	p.H1069R	ENST00000279873	NM_032199.2	1069	cAc/cGc					NEWRECORD																																																																									
GREM1	0	MSKCC	GRCh37	15	33023112	33023112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	93	815	0	ENST00000300177.4:c.221T>C	p.Leu74Pro	p.L74P	ENST00000300177	NM_001191322.1	74	cTg/cCg					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81954863	81954863	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	122	864	0	ENST00000359376.3:c.2296A>C	p.Asn766His	p.N766H	ENST00000359376	NM_002661.3	766	Aat/Cat					NEWRECORD																																																																									
MEF2B	0	MSKCC	GRCh37	19	19257950	19257950	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	173	721	0	ENST00000162023.5:c.436G>C	p.Ala146Pro	p.A146P	ENST00000162023		146	Gcc/Ccc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44948999	44948999	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	65	472	0	ENST00000377967.4:c.3560A>C	p.Asn1187Thr	p.N1187T	ENST00000377967	NM_021140.2	1187	aAt/aCt					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119170214	119170222	+	inframe_deletion	In_Frame_Del	DEL	AAGGTTCCC	AAGGTTCCC	-			P-0013392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	105	430	0	ENST00000264033.4:c.2447_2455del	p.Gly816_Gln818del	p.G816_Q818del	ENST00000264033	NM_005188.3	815	gAAGGTTCCCaa/gaa					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1807893	1807894	+	missense_variant	Missense_Mutation	DNP	CG	CG	AA			P-0013392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	48	633	2	ENST00000260795.2:c.1952_1953delinsAA	p.Thr651Lys	p.T651K	ENST00000260795		651	aCG/aAA					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0001640-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			61	210	291	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0001640-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			67	202	261	1	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15288553	15288553	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001640-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			44	19	87	0	ENST00000263388.2:c.4186C>A	p.Arg1396Ser	p.R1396S	ENST00000263388	NM_000435.2	1396	Cgc/Agc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913283		P-0014511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	43	459	0	ENST00000263967.3:c.3129G>T	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atT					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678626	88678626	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	51	328	0	ENST00000360948.2:c.910C>A	p.Pro304Thr	p.P304T	ENST00000360948	NM_001012338.2	304	Ccc/Acc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509915	106509915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	165	566	0	ENST00000359195.3:c.1909G>T	p.Asp637Tyr	p.D637Y	ENST00000359195	NM_002649.2	637	Gat/Tat					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55259515	55259517	+	missense_variant	Missense_Mutation	ONP	TGG	TGG	GGT			P-0014511-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1389	370	621	0	ENST00000275493.2:c.2573_2575delinsGGT	p.Leu858_Ala859delinsArgSer	p.L858_A859delinsRS	ENST00000275493	NM_005228.3	858	cTGGcc/cGGTcc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014967-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	22	495	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0011556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	385	542	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148508728	148508728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	437	528	0	ENST00000320356.2:c.1936T>C	p.Tyr646His	p.Y646H	ENST00000320356	NM_004456.4	646	Tac/Cac					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441334	52441334	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0011556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			220	416	561	0	ENST00000460680.1:c.438-2A>T		p.X146_splice	ENST00000460680	NM_004656.3	146						NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716042	52716042	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1066	138	618	0	ENST00000322088.6:c.607A>T	p.Ser203Cys	p.S203C	ENST00000322088	NM_014225.5	203	Agt/Tgt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	120	327	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	153	392	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag					NEWRECORD																																																																									
CD79A	0	MSKCC	GRCh37	19	42383144	42383144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	190	674	0	ENST00000221972.3:c.164C>T	p.Pro55Leu	p.P55L	ENST00000221972	NM_021601.3	55	cCg/cTg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162741877	162741877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	94	284	0	ENST00000367921.3:c.1568A>T	p.Glu523Val	p.E523V	ENST00000367921	NM_006182.2	523	gAg/gTg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29754928	29754928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	69	222	0	ENST00000389048.3:c.1007C>A	p.Pro336Gln	p.P336Q	ENST00000389048	NM_004304.4	336	cCg/cAg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198265591	198265591	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	96	347	0	ENST00000335508.6:c.2566G>A	p.Asp856Asn	p.D856N	ENST00000335508	NM_012433.2	856	Gat/Aat					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183634	10183634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	73	365	3	ENST00000256474.2:c.103G>T	p.Ala35Ser	p.A35S	ENST00000256474	NM_000551.3	35	Gcc/Tcc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183848	10183848	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	34	162	0	ENST00000256474.2:c.317G>T	p.Gly106Val	p.G106V	ENST00000256474	NM_000551.3	106	gGc/gTc					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49397658	49397658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	130	341	0	ENST00000418115.1:c.566G>T	p.Gly189Val	p.G189V	ENST00000418115	NM_001664.2	189	gGg/gTg					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189586490	189586490	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	74	231	0	ENST00000264731.3:c.1114G>C	p.Asp372His	p.D372H	ENST00000264731	NM_003722.4	372	Gat/Cat					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143043306	143043306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	122	404	0	ENST00000262992.4:c.2110G>T	p.Val704Leu	p.V704L	ENST00000262992	NM_001101669.1	704	Gtg/Ttg					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143129590	143129590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	65	287	2	ENST00000262992.4:c.1060C>A	p.Pro354Thr	p.P354T	ENST00000262992	NM_001101669.1	354	Cct/Act					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630140	187630140	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	106	326	0	ENST00000441802.2:c.842G>T	p.Cys281Phe	p.C281F	ENST00000441802	NM_005245.3	281	tGc/tTc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2946370	2946370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	246	473	0	ENST00000396946.4:c.3367G>T	p.Asp1123Tyr	p.D1123Y	ENST00000396946	NM_032415.4	1123	Gac/Tac					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151874206	151874206	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	69	327	0	ENST00000262189.6:c.8332G>C	p.Asp2778His	p.D2778H	ENST00000262189	NM_170606.2	2778	Gac/Cac					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372193	55372193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	10	99	0	ENST00000297316.4:c.883G>C	p.Val295Leu	p.V295L	ENST00000297316	NM_022454.3	295	Gtg/Ctg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139399309	139399309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	96	362	0	ENST00000277541.6:c.4834G>T	p.Gly1612Cys	p.G1612C	ENST00000277541	NM_017617.3	1612	Ggc/Tgc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70451458	70451458	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	154	488	0	ENST00000373644.4:c.6298G>A	p.Glu2100Lys	p.E2100K	ENST00000373644	NM_030625.2	2100	Gaa/Aaa					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	420113	420113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	186	450	0	ENST00000399788.2:c.3154G>A	p.Ala1052Thr	p.A1052T	ENST00000399788	NM_001042603.1	1052	Gca/Aca					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57860022	57860022	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	136	521	0	ENST00000228682.2:c.763-1G>T		p.X255_splice	ENST00000228682	NM_005269.2	255						NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986871	36986871	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			122	19	71	0	ENST00000354822.5:c.818G>T	p.Gly273Val	p.G273V	ENST00000354822	NM_001079668.2	273	gGg/gTg					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610356	81610356	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	107	393	0	ENST00000298171.2:c.1954C>A	p.Pro652Thr	p.P652T	ENST00000298171	NM_000369.2	652	Cct/Act					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29546102	29546102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	123	318	0	ENST00000358273.4:c.1607C>T	p.Ser536Leu	p.S536L	ENST00000358273	NM_001042492.2	536	tCa/tTa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29560085	29560085	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	132	350	0	ENST00000358273.4:c.3562C>T	p.Gln1188Ter	p.Q1188*	ENST00000358273	NM_001042492.2	1188	Caa/Taa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29679298	29679298	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	85	353	1	ENST00000358273.4:c.7481G>T	p.Trp2494Leu	p.W2494L	ENST00000358273	NM_001042492.2	2494	tGg/tTg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575107	48575107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	102	361	0	ENST00000342988.3:c.301T>A	p.Trp101Arg	p.W101R	ENST00000342988	NM_005359.5	101	Tgg/Agg					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40762875	40762875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	131	402	0	ENST00000392038.2:c.133C>T	p.Pro45Ser	p.P45S	ENST00000392038	NM_001626.4	45	Cct/Tct					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40762951	40762951	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	91	317	0	ENST00000392038.2:c.57C>G	p.Ile19Met	p.I19M	ENST00000392038	NM_001626.4	19	atC/atG					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766213	66766213	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	52	104	0	ENST00000374690.3:c.1225G>T	p.Gly409Trp	p.G409W	ENST00000374690	NM_000044.3	409	Ggg/Tgg					NEWRECORD																																																																									
SH2D1A	0	MSKCC	GRCh37	X	123505200	123505200	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0011150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	60	82	0	ENST00000371139.4:c.347-1G>T		p.X116_splice	ENST00000371139	NM_001114937.2	116						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	501	428	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	178	529	0	ENST00000269305.4:c.772G>C	p.Glu258Gln	p.E258Q	ENST00000269305	NM_001126112.2	258	Gaa/Caa					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81946299	81946299	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	233	817	1	ENST00000359376.3:c.2032G>A	p.Asp678Asn	p.D678N	ENST00000359376	NM_002661.3	678	Gac/Aac					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162746131	162746131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	139	420	0	ENST00000367921.3:c.2254C>T	p.Arg752Cys	p.R752C	ENST00000367921	NM_006182.2	752	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	403	630	0	ENST00000269305.4:c.747G>C	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agC					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56487647	56487647	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	223	696	0	ENST00000267101.3:c.1580G>C	p.Gly527Ala	p.G527A	ENST00000267101	NM_001982.3	527	gGt/gCt					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12626714	12626714	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	137	581	0	ENST00000251849.4:c.1575C>G	p.Phe525Leu	p.F525L	ENST00000251849	NM_002880.3	525	ttC/ttG					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056227	26056227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	56	679	1	ENST00000343677.2:c.430G>A	p.Gly144Ser	p.G144S	ENST00000343677	NM_005319.3	144	Ggc/Agc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2978330	2978330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	74	634	0	ENST00000396946.4:c.1000G>C	p.Glu334Gln	p.E334Q	ENST00000396946	NM_032415.4	334	Gag/Cag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152027750	152027750	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	270	931	0	ENST00000262189.6:c.325C>T	p.Gln109Ter	p.Q109*	ENST00000262189	NM_170606.2	109	Cag/Tag					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123224815	123224818	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTAA	GTAA	-			P-0014013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	121	921	0	ENST00000218089.9:c.3578+3_3578+6del		p.X1193_splice	ENST00000218089	NM_001042749.1	1193						NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42040955	42040955	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	399	863	0	ENST00000219905.7:c.5333C>G	p.Ser1778Ter	p.S1778*	ENST00000219905	NM_001164273.1	1778	tCa/tGa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76875958	76875961	+	frameshift_variant	Frame_Shift_Del	DEL	TTTT	TTTT	-			P-0010090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	363	762	0	ENST00000373344.5:c.5174_5177del	p.Lys1725MetfsTer10	p.K1725Mfs*10	ENST00000373344	NM_000489.3	1725	aAAAAt/at					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577375	64577375	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	337	649	0	ENST00000337652.1:c.207del	p.Asp70ThrfsTer49	p.D70Tfs*49	ENST00000337652	NM_130803.2	69	ccC/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	94	420	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556079	29556079	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	22	271	0	ENST00000358273.4:c.2446C>T	p.Arg816Ter	p.R816*	ENST00000358273	NM_001042492.2	816	Cga/Tga					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	149997733	149997733	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	81	364	0	ENST00000253339.5:c.2734G>C	p.Gly912Arg	p.G912R	ENST00000253339		912	Ggg/Cgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	403	376	1	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	441	349	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67200629	67200629	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	345	480	0	ENST00000312629.5:c.740A>G	p.Asn247Ser	p.N247S	ENST00000312629	NM_003952.2	247	aAc/aGc					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412898	49412898	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1113	121	728	0	ENST00000418115.1:c.125A>C	p.Tyr42Ser	p.Y42S	ENST00000418115	NM_001664.2	42	tAt/tCt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70348526	70348526	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	80	338	0	ENST00000374080.3:c.3433G>A	p.Asp1145Asn	p.D1145N	ENST00000374080		1145	Gat/Aat					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55161344	55161344	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	221	224	0	ENST00000257290.5:c.3175T>G	p.Phe1059Val	p.F1059V	ENST00000257290	NM_006206.4	1059	Ttc/Gtc					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97933361	97933361	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	170	201	0	ENST00000289081.3:c.521G>A	p.Arg174Gln	p.R174Q	ENST00000289081	NM_000136.2	174	cGa/cAa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46123697	46123697	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	147	180	0	ENST00000334344.6:c.78C>A	p.Phe26Leu	p.F26L	ENST00000334344	NM_152641.2	26	ttC/ttA					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593587	55593643	+	inframe_deletion	In_Frame_Del	DEL	CATGTATGAAGTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTA	CATGTATGAAGTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTA	-			P-0011321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	342	248	0	ENST00000288135.5:c.1656_1712del	p.Met552_Tyr570del	p.M552_Y570del	ENST00000288135	NM_000222.2	551	ccCATGTATGAAGTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTAc/ccc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8111496	8111512	+	frameshift_variant	Frame_Shift_Del	DEL	TGGAGGAGGAATGCCAA	TGGAGGAGGAATGCCAA	-			P-0011321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	252	317	1	ENST00000346208.3:c.985_1001del	p.Arg329GlyfsTer17	p.R329Gfs*17	ENST00000346208		328	TGGAGGAGGAATGCCAAt/t					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	56	509	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
RAB35	0	MSKCC	GRCh37	12	120536939	120536939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013952-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	72	647	0	ENST00000229340.5:c.247G>A	p.Gly83Arg	p.G83R	ENST00000229340	NM_006861.6	83	Ggg/Agg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011399-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	64	594	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157100414	157100414	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	11	64	0	ENST00000346085.5:c.1351T>C	p.Ser451Pro	p.S451P	ENST00000346085	NM_020732.3	451	Tcg/Ccg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101000	27101000	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			732	240	435	0	ENST00000324856.7:c.4282T>C	p.Tyr1428His	p.Y1428H	ENST00000324856	NM_006015.4	1428	Tac/Cac					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39923169	39923182	+	frameshift_variant	Frame_Shift_Del	DEL	GAGGAACTGTTTGT	GAGGAACTGTTTGT	-			P-0010718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	228	657	0	ENST00000378444.4:c.3526_3539del	p.Thr1176Ter	p.T1176*	ENST00000378444	NM_001123385.1	1176	ACAAACAGTTCCTCt/t					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578481	7578481	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	434	443	0	ENST00000269305.4:c.449del	p.Thr150AsnfsTer20	p.T150Nfs*20	ENST00000269305	NM_001126112.2	150	aCa/aa					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	32	260	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52668668	52668668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	35	497	0	ENST00000394830.3:c.1251C>A	p.Tyr417Ter	p.Y417*	ENST00000394830	NM_018313.4	417	taC/taA					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914382	32914382	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	67	917	3	ENST00000380152.3:c.5890A>T	p.Lys1964Ter	p.K1964*	ENST00000380152		1964	Aag/Tag					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183756	10183756	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	40	358	0	ENST00000256474.2:c.225del	p.Phe76SerfsTer83	p.F76Sfs*83	ENST00000256474	NM_000551.3	75	atC/at					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	18	211	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45368195	45368206	+	coding_sequence_variant,3_prime_UTR_variant	In_Frame_Del	DEL	GCTTTATGACAT	GCTTTATGACAT	-			P-0014673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			220	256	16	0	ENST00000262160.6:c.1396_*3delATGTCATAAAGC		p.*466*	ENST00000262160	NM_005901.5	466						NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014673-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	15	503	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0014953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	186	698	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12032481	12032481	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	75	393	0	ENST00000353533.5:c.917C>T	p.Pro306Leu	p.P306L	ENST00000353533	NM_003010.3	306	cCt/cTt					NEWRECORD																																																																									
MLL4	0	MSKCC	GRCh37	19	36213497	36213497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014953-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	117	924	2	ENST00000222270.7:c.2599C>T	p.Arg867Cys	p.R867C	ENST00000222270	NM_014727.1	867	Cgc/Tgc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696431	47696431	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	177	737	0	ENST00000347630.2:c.392G>T	p.Trp131Leu	p.W131L	ENST00000347630	NM_001007230.1	131	tGg/tTg					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12043188	12043188	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	176	762	0	ENST00000353533.5:c.1073A>G	p.Tyr358Cys	p.Y358C	ENST00000353533	NM_003010.3	358	tAt/tGt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779626	3779626	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	95	539	0	ENST00000262367.5:c.5422T>G	p.Cys1808Gly	p.C1808G	ENST00000262367	NM_004380.2	1808	Tgc/Ggc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	295	697	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936107	178936107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	124	254	1	ENST00000263967.3:c.1649T>A	p.Phe550Tyr	p.F550Y	ENST00000263967	NM_006218.2	550	tTt/tAt					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007633	45007633	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	143	324	0	ENST00000558401.1:c.80T>C	p.Ile27Thr	p.I27T	ENST00000558401	NM_004048.2	27	aTt/aCt					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46265506	46265506	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0011483-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	278	664	0	ENST00000371998.3:c.2376+1delG		p.E792fs	ENST00000371998		792	gaG/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	26	376	0	ENST00000269305.4:c.673-1G>A		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	18	511	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561564	9561564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	14	291	0	ENST00000353224.5:c.218G>A	p.Gly73Glu	p.G73E	ENST00000353224	NM_177990.2	73	gGa/gAa					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	18	396	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	39	374	2	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574004	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	41	776	0	ENST00000269305.4:c.1023_1024delCCinsTT	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	341	ttCCga/ttTTga					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8499706	8499706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	26	529	0	ENST00000356435.5:c.2263G>A	p.Glu755Lys	p.E755K	ENST00000356435		755	Gaa/Aaa					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670733	134670733	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	20	440	2	ENST00000398015.3:c.644G>A	p.Ser215Asn	p.S215N	ENST00000398015	NM_004441.4	215	aGc/aAc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55573410	55573410	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	56	457	0	ENST00000288135.5:c.1072A>C	p.Lys358Gln	p.K358Q	ENST00000288135	NM_000222.2	358	Aaa/Caa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187539624	187539624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	35	525	0	ENST00000441802.2:c.8116C>T	p.Pro2706Ser	p.P2706S	ENST00000441802	NM_005245.3	2706	Cct/Tct					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93955152	93955152	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	56	809	2	ENST00000369303.4:c.2746G>A	p.Asp916Asn	p.D916N	ENST00000369303	NM_004440.3	916	Gat/Aat					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55224327	55224327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	21	516	0	ENST00000275493.2:c.1108C>T	p.His370Tyr	p.H370Y	ENST00000275493	NM_005228.3	370	Cac/Tac					NEWRECORD																																																																									
EGFL7	0	MSKCC	GRCh37	9	139562811	139562811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	35	612	0	ENST00000308874.7:c.77C>T	p.Pro26Leu	p.P26L	ENST00000308874		26	cCc/cTc					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32456324	32456324	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	17	582	0	ENST00000332351.3:c.568T>A	p.Ser190Thr	p.S190T	ENST00000332351	NM_024426.4	190	Tcc/Acc					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100922247	100922247	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	49	737	0	ENST00000325455.5:c.2265G>A	p.Trp755Ter	p.W755*	ENST00000325455	NM_001202474.3	755	tgG/tgA					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14041695	14041695	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	46	622	0	ENST00000311895.7:c.2242A>G	p.Met748Val	p.M748V	ENST00000311895	NM_005236.2	748	Atg/Gtg					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59760998	59760998	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	45	637	0	ENST00000259008.2:c.3409T>C	p.Tyr1137His	p.Y1137H	ENST00000259008	NM_032043.2	1137	Tat/Cat					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33793139	33793139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	19	593	2	ENST00000498907.2:c.182C>T	p.Ser61Phe	p.S61F	ENST00000498907	NM_004364.3	61	tCc/tTc					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412925	63412926	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	C			P-0012783-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	47	474	0	ENST00000330258.3:c.241_242delinsG	p.Ser81ValfsTer19	p.S81Vfs*19	ENST00000330258	NM_152424.3	81	TCt/Gt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	572	504	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8460432	8460432	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	142	366	0	ENST00000356435.5:c.3854T>A	p.Ile1285Asn	p.I1285N	ENST00000356435		1285	aTt/aAt					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57861245	57861245	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	229	578	0	ENST00000228682.2:c.1042C>T	p.Arg348Ter	p.R348*	ENST00000228682	NM_005269.2	348	Cga/Tga					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15375291	15375291	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010214-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	308	441	0	ENST00000263377.2:c.1136C>G	p.Pro379Arg	p.P379R	ENST00000263377	NM_058243.2	379	cCt/cGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012325-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			188	60	167	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409436	80409436	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012325-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			162	99	203	0	ENST00000286548.4:c.678C>G	p.Ile226Met	p.I226M	ENST00000286548	NM_002072.3	226	atC/atG					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49445995	49445995	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012325-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			498	340	500	0	ENST00000301067.7:c.1471G>T	p.Glu491Ter	p.E491*	ENST00000301067	NM_003482.3	491	Gaa/Taa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49448178	49448178	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012325-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			559	159	409	0	ENST00000301067.7:c.422G>A	p.Trp141Ter	p.W141*	ENST00000301067	NM_003482.3	141	tGg/tAg					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81606167	81606167	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012325-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			522	159	423	0	ENST00000298171.2:c.837C>G	p.Tyr279Ter	p.Y279*	ENST00000298171	NM_000369.2	279	taC/taG					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41245918	41245918	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012325-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			502	170	492	0	ENST00000357654.3:c.1630C>T	p.Gln544Ter	p.Q544*	ENST00000357654	NM_007294.3	544	Caa/Taa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16075310	16075310	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012325-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			355	43	312	0	ENST00000268712.3:c.243-1G>A		p.X81_splice	ENST00000268712	NM_006311.3	81						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1197	68	563	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0014805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	63	465	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378564	25378564	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	58	480	0	ENST00000256078.4:c.434C>A	p.Ser145Ter	p.S145*	ENST00000256078	NM_033360.2	145	tCa/tAa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55130004	55130004	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014805-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1163	75	685	0	ENST00000257290.5:c.538G>A	p.Gly180Arg	p.G180R	ENST00000257290	NM_006206.4	180	Ggg/Agg					NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38950648	38950648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776074870		P-0013843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	9	1007	2	ENST00000357387.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000357387	NM_152756.3	1101	tCg/tTg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46231379	46231379	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	47	518	0	ENST00000334344.6:c.1219C>G	p.Leu407Val	p.L407V	ENST00000334344	NM_152641.2	407	Ctc/Gtc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2223348	2223349	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0013843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	132	1096	0	ENST00000398665.3:c.3459_3460delinsT	p.Pro1154LeufsTer19	p.P1154Lfs*19	ENST00000398665	NM_032482.2	1153	tcCCct/tcTct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577058	7577058	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	410	561	2	ENST00000269305.4:c.880G>T	p.Glu294Ter	p.E294*	ENST00000269305	NM_001126112.2	294	Gag/Tag					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190728676	190728678	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0010827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	96	551	0	ENST00000441310.2:c.2067_2069delAAG	p.Arg690del	p.R690del	ENST00000441310	NM_000534.4	688	aaAAGa/aaa					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729601	41729601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1243	335	843	0	ENST00000242208.4:c.928C>T	p.Arg310Trp	p.R310W	ENST00000242208	NM_002192.2	310	Cgg/Tgg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16260837	16260837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	112	399	0	ENST00000375759.3:c.8102C>T	p.Thr2701Met	p.T2701M	ENST00000375759	NM_015001.2	2701	aCg/aTg					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123276958	123276958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	118	387	2	ENST00000358487.5:c.959C>T	p.Thr320Met	p.T320M	ENST00000358487	NM_000141.4	320	aCg/aTg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943546	66943546	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	32	368	0	ENST00000374690.3:c.2626C>A	p.Gln876Lys	p.Q876K	ENST00000374690	NM_000044.3	876	Cag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057651	27057651	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	206	757	0	ENST00000324856.7:c.1360delT	p.Tyr454MetfsTer165	p.Y454Mfs*165	ENST00000324856	NM_006015.4	453	ccT/cc					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47428434	47428437	+	splice_donor_variant,intron_variant	Splice_Site	DEL	TATC	TATC	-			P-0010827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	37	398	0	ENST00000377045.4:c.1300+7_1300+10delATCT		p.X434_splice	ENST00000377045	NM_001654.4	434						NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8497259	8497259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	41	411	0	ENST00000356435.5:c.2332G>T	p.Asp778Tyr	p.D778Y	ENST00000356435		778	Gat/Tat					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410226	63410226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	22	329	0	ENST00000330258.3:c.2941G>T	p.Asp981Tyr	p.D981Y	ENST00000330258	NM_152424.3	981	Gac/Tac					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246445	105246445	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	146	686	1	ENST00000349310.3:c.155T>A	p.Leu52His	p.L52H	ENST00000349310	NM_001014432.1	52	cTc/cAc					NEWRECORD																																																																									
ERF	0	MSKCC	GRCh37	19	42753457	42753457	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014256-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	180	971	0	ENST00000222329.4:c.807del	p.Met270Ter	p.M270*	ENST00000222329	NM_006494.2	269	ccC/cc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1211	30	688	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			703	109	717	0	ENST00000371953.3:c.389G>C	p.Arg130Pro	p.R130P	ENST00000371953	NM_000314.4	130	cGa/cCa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	83	535	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27107136	27107137	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0014301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	92	511	0	ENST00000324856.7:c.6749_6750del	p.Glu2250ValfsTer27	p.E2250Vfs*27	ENST00000324856	NM_006015.4	2249	tcAGag/tcag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624242	89624242	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	42	268	0	ENST00000371953.3:c.16A>G	p.Lys6Glu	p.K6E	ENST00000371953	NM_000314.4	6	Aaa/Gaa					NEWRECORD																																																																									
RRAS2	0	MSKCC	GRCh37	11	14380349	14380349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			909	96	752	0	ENST00000256196.4:c.68G>A	p.Gly23Asp	p.G23D	ENST00000256196		23	gGc/gAc					NEWRECORD																																																																									
CYSLTR2	0	MSKCC	GRCh37	13	49281284	49281284	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			857	127	847	0	ENST00000282018.3:c.331T>G	p.Cys111Gly	p.C111G	ENST00000282018	NM_020377.2	111	Tgc/Ggc					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67650711	67650711	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1172	112	647	0	ENST00000264010.4:c.1016G>C	p.Arg339Pro	p.R339P	ENST00000264010	NM_006565.3	339	cGg/cCg					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589593	67589598	+	inframe_deletion	In_Frame_Del	DEL	TAACAC	TAACAC	-			P-0014301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			446	48	355	0	ENST00000274335.5:c.1357_1362del	p.Asn453_Thr454del	p.N453_T454del	ENST00000274335		452	taTAACACt/tat					NEWRECORD																																																																									
HIST1H3F	0	MSKCC	GRCh37	6	26250833	26250833	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0014301-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	41	225	0	ENST00000446824.2:c.1A>G	p.Met1?	p.M1?	ENST00000446824	NM_021018.2	1	Atg/Gtg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	451	472	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	467	435	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27102137	27102137	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	155	582	0	ENST00000324856.7:c.5063T>G	p.Leu1688Ter	p.L1688*	ENST00000324856	NM_006015.4	1688	tTa/tGa					NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36820839	36820839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	88	291	1	ENST00000373129.3:c.538G>A	p.Asp180Asn	p.D180N	ENST00000373129	NM_032017.1	180	Gac/Aac					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241682895	241682895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	85	334	0	ENST00000366560.3:c.128G>A	p.Arg43Gln	p.R43Q	ENST00000366560	NM_000143.3	43	cGa/cAa					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212589826	212589826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	50	269	0	ENST00000342788.4:c.716C>T	p.Ser239Leu	p.S239L	ENST00000342788	NM_005235.2	239	tCa/tTa					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643415	52643415	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	184	762	0	ENST00000394830.3:c.2481G>C	p.Lys827Asn	p.K827N	ENST00000394830	NM_018313.4	827	aaG/aaC					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157812	106157812	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	61	315	0	ENST00000380013.4:c.2713G>C	p.Asp905His	p.D905H	ENST00000380013	NM_001127208.2	905	Gat/Cat					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27839716	27839716	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1763	620	1569	0	ENST00000328488.2:c.378G>C	p.Gln126His	p.Q126H	ENST00000328488	NM_003533.2	126	caG/caC					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87570406	87570406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	75	659	1	ENST00000277120.3:c.2146G>A	p.Asp716Asn	p.D716N	ENST00000277120		716	Gac/Aac					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133710877	133710877	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	183	730	0	ENST00000318560.5:c.44A>T	p.Lys15Met	p.K15M	ENST00000318560	NM_005157.4	15	aAg/aTg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139402574	139402574	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	103	264	0	ENST00000277541.6:c.3343C>A	p.Leu1115Met	p.L1115M	ENST00000277541	NM_017617.3	1115	Ctg/Atg					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333087	70333087	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1013	163	610	0	ENST00000373644.4:c.992T>G	p.Leu331Trp	p.L331W	ENST00000373644	NM_030625.2	331	tTg/tGg					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119145569	119145569	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1234	152	603	0	ENST00000264033.4:c.775A>G	p.Asn259Asp	p.N259D	ENST00000264033	NM_005188.3	259	Aac/Gac					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29527439	29527439	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	46	316	0	ENST00000358273.4:c.889-1G>A		p.X297_splice	ENST00000358273	NM_001042492.2	297						NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41243830	41243830	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	77	368	0	ENST00000357654.3:c.3718C>G	p.Gln1240Glu	p.Q1240E	ENST00000357654	NM_007294.3	1240	Cag/Gag					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42797200	42797200	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	288	222	0	ENST00000575354.2:c.3562C>G	p.Pro1188Ala	p.P1188A	ENST00000575354	NM_015125.3	1188	Ccc/Gcc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47038867	47038867	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010337-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	42	68	0	ENST00000329236.7:c.643G>T	p.Glu215Ter	p.E215*	ENST00000329236	NM_001204466.1	215	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	241	490	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0012602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	1908	463	1	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936096	178936096	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	138	268	0	ENST00000263967.3:c.1638G>C	p.Gln546His	p.Q546H	ENST00000263967	NM_006218.2	546	caG/caC					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209104698	209104698	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	99	499	0	ENST00000345146.2:c.880G>A	p.Val294Met	p.V294M	ENST00000345146	NM_005896.2	294	Gtg/Atg					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27839847	27839847	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	228	1455	2	ENST00000328488.2:c.247C>A	p.Leu83Met	p.L83M	ENST00000328488	NM_003533.2	83	Ctg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	402	729	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46244052	46244065	+	frameshift_variant	Frame_Shift_Del	DEL	GCTACAGTTATCCA	GCTACAGTTATCCA	-			P-0014626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	67	571	1	ENST00000334344.6:c.2147_2160del	p.Ala716GlufsTer11	p.A716Efs*11	ENST00000334344	NM_152641.2	716	GCTACAGTTATCCAg/g					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50920265	50920304	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGGGCCCCAGCACTTGGGCTGACCCGCCTCCCCACAGGAG	TGGGCCCCAGCACTTGGGCTGACCCGCCTCCCCACAGGAG	CAGGAA			P-0014626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1355	170	762	3	ENST00000440232.2:c.3068-37_3070delinsCAGGAA		p.X1023_splice	ENST00000440232	NM_002691.3	1023						NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42866322	42866322	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	404	714	0	ENST00000398585.3:c.310A>G	p.Thr104Ala	p.T104A	ENST00000398585	NM_001135099.1	104	Acg/Gcg					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143033831	143033831	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	159	354	0	ENST00000262992.4:c.2140C>T	p.His714Tyr	p.H714Y	ENST00000262992	NM_001101669.1	714	Cat/Tat					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508809	106508809	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014626-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1499	97	567	0	ENST00000359195.3:c.803A>G	p.Gln268Arg	p.Q268R	ENST00000359195	NM_002649.2	268	cAg/cGg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	49	221	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56178169	56178169	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	182	618	1	ENST00000399503.3:c.3142C>T	p.Gln1048Ter	p.Q1048*	ENST00000399503	NM_005921.1	1048	Cag/Tag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72991524	72991524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	255	1014	0	ENST00000268489.5:c.2521C>T	p.Gln841Ter	p.Q841*	ENST00000268489	NM_006885.3	841	Cag/Tag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992393	72992393	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	198	923	1	ENST00000268489.5:c.1652G>T	p.Ser551Ile	p.S551I	ENST00000268489	NM_006885.3	551	aGt/aTt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993296	72993296	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	182	917	0	ENST00000268489.5:c.749C>A	p.Ser250Tyr	p.S250Y	ENST00000268489	NM_006885.3	250	tCt/tAt					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56183254	56183254	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	115	458	2	ENST00000399503.3:c.4167del	p.Phe1389LeufsTer33	p.F1389Lfs*33	ENST00000399503	NM_005921.1	1388	gaT/ga					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68863589	68863589	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012820-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	176	689	0	ENST00000261769.5:c.2329del	p.Asp777ThrfsTer6	p.D777Tfs*6	ENST00000261769	NM_004360.3	776	ctG/ct					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954342	48954342	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	27	82	0	ENST00000267163.4:c.1463C>T	p.Ala488Val	p.A488V	ENST00000267163	NM_000321.2	488	gCg/gTg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954211	48954211	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			130	198	393	0	ENST00000267163.4:c.1415del	p.Asn472IlefsTer6	p.N472Ifs*6	ENST00000267163	NM_000321.2	471	cAa/ca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			141	508	914	0	ENST00000269305.4:c.826G>C	p.Ala276Pro	p.A276P	ENST00000269305	NM_001126112.2	276	Gcc/Ccc					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118166475	118166475	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	121	530	0	ENST00000369448.3:c.985A>G	p.Thr329Ala	p.T329A	ENST00000369448	NM_017709.3	329	Act/Gct					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3786651	3786651	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			88	455	677	0	ENST00000262367.5:c.4560G>T	p.Lys1520Asn	p.K1520N	ENST00000262367	NM_004380.2	1520	aaG/aaT					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55948196	55948196	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	102	711	0	ENST00000263923.4:c.3775G>C	p.Asp1259His	p.D1259H	ENST00000263923	NM_002253.2	1259	Gac/Cac					NEWRECORD																																																																									
EIF4E	0	MSKCC	GRCh37	4	99802257	99802257	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			180	61	367	0	ENST00000280892.6:c.636G>C	p.Lys212Asn	p.K212N	ENST00000280892	NM_001130678.1	212	aaG/aaC					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44922935	44922935	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014844-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			356	100	392	0	ENST00000377967.4:c.1796C>A	p.Thr599Lys	p.T599K	ENST00000377967	NM_021140.2	599	aCa/aAa					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0010177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	85	465	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	62	376	0	ENST00000342988.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000342988	NM_005359.5	493	gAt/gGt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246177	46246177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	19	512	0	ENST00000334344.6:c.4271G>A	p.Gly1424Asp	p.G1424D	ENST00000334344	NM_152641.2	1424	gGt/gAt					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028660	12028660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	54	611	1	ENST00000353533.5:c.863C>T	p.Ser288Phe	p.S288F	ENST00000353533	NM_003010.3	288	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7573987	7573987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	46	657	1	ENST00000269305.4:c.1040C>A	p.Ala347Asp	p.A347D	ENST00000269305	NM_001126112.2	347	gCc/gAc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143351	30143351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	71	348	0	ENST00000389048.3:c.175G>A	p.Val59Met	p.V59M	ENST00000389048	NM_004304.4	59	Gtg/Atg					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56111509	56111509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	43	18	0	ENST00000399503.3:c.109C>G	p.Pro37Ala	p.P37A	ENST00000399503	NM_005921.1	37	Ccc/Gcc					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	175956125	175956125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	137	430	0	ENST00000367669.3:c.2087C>G	p.Thr696Arg	p.T696R	ENST00000367669	NM_022457.5	696	aCa/aGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574006	7574013	+	frameshift_variant	Frame_Shift_Del	DEL	ACATCTCG	ACATCTCG	-			P-0014455-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	559	496	0	ENST00000269305.4:c.1014_1021del	p.Glu339ProfsTer5	p.E339Pfs*5	ENST00000269305	NM_001126112.2	338	ttCGAGATGTtc/tttc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	222	479	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43805058	43805058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	159	819	0	ENST00000372470.3:c.508C>A	p.Arg170Ser	p.R170S	ENST00000372470	NM_005373.2	170	Cgc/Agc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142238593	142238593	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	111	596	1	ENST00000350721.4:c.4300G>T	p.Glu1434Ter	p.E1434*	ENST00000350721	NM_001184.3	1434	Gag/Tag					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187557791	187557791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	122	630	0	ENST00000441802.2:c.3920G>T	p.Gly1307Val	p.G1307V	ENST00000441802	NM_005245.3	1307	gGa/gTa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151856072	151856072	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	142	729	0	ENST00000262189.6:c.11546A>T	p.Gln3849Leu	p.Q3849L	ENST00000262189	NM_170606.2	3849	cAg/cTg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8097644	8097644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	65	320	0	ENST00000346208.3:c.26G>C	p.Arg9Pro	p.R9P	ENST00000346208		9	cGc/cCc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28608537	28608537	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	80	442	0	ENST00000241453.7:c.1605C>A	p.Phe535Leu	p.F535L	ENST00000241453	NM_004119.2	535	ttC/ttA					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15281155	15281155	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	145	765	0	ENST00000263388.2:c.5101G>T	p.Ala1701Ser	p.A1701S	ENST00000263388	NM_000435.2	1701	Gcg/Tcg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790013	40790013	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	113	578	1	ENST00000373198.4:c.2718C>A	p.Tyr906Ter	p.Y906*	ENST00000373198	NM_133170.3	906	taC/taA					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70356231	70356231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	182	407	0	ENST00000374080.3:c.5126G>C	p.Arg1709Pro	p.R1709P	ENST00000374080		1709	cGa/cCa					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473615	67473616	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0013004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	111	635	0	ENST00000327367.4:c.695_696delinsTT	p.Trp232Phe	p.W232F	ENST00000327367	NM_005902.3	232	tGG/tTT					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	175	346	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	185	534	0	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	240	609	1	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143033806	143033806	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	234	448	0	ENST00000262992.4:c.2165C>G	p.Pro722Arg	p.P722R	ENST00000262992	NM_001101669.1	722	cCa/cGa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187521300	187521300	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	313	866	1	ENST00000441802.2:c.11855T>C	p.Phe3952Ser	p.F3952S	ENST00000441802	NM_005245.3	3952	tTt/tCt					NEWRECORD																																																																									
PNRC1	0	MSKCC	GRCh37	6	89791122	89791122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	35	72	1	ENST00000336032.3:c.509C>T	p.Ala170Val	p.A170V	ENST00000336032	NM_006813.2	170	gCg/gTg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120247	70120247	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	499	919	1	ENST00000245479.2:c.1249C>T	p.Gln417Ter	p.Q417*	ENST00000245479	NM_000346.3	417	Cag/Tag					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42798975	42798975	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	263	722	0	ENST00000575354.2:c.4460-1G>T		p.X1487_splice	ENST00000575354	NM_015125.3	1487						NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100630235	100630235	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	49	414	0	ENST00000308731.7:c.38G>A	p.Arg13Gln	p.R13Q	ENST00000308731	NM_000061.2	13	cGa/cAa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163277	32163277	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013037-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	340	983	1	ENST00000375023.3:c.5949del	p.Asp1984ThrfsTer12	p.D1984Tfs*12	ENST00000375023	NM_004557.3	1983	ctT/ct					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			441	17	953	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577079	7577079	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1296	27	956	0	ENST00000269305.4:c.859G>T	p.Glu287Ter	p.E287*	ENST00000269305	NM_001126112.2	287	Gag/Tag					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12011144	12011144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	22	352	0	ENST00000353533.5:c.551C>T	p.Ser184Leu	p.S184L	ENST00000353533	NM_003010.3	184	tCg/tTg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68857340	68857340	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	80	615	0	ENST00000261769.5:c.1975G>T	p.Glu659Ter	p.E659*	ENST00000261769	NM_004360.3	659	Gag/Tag					NEWRECORD																																																																									
HIST1H3G	0	MSKCC	GRCh37	6	26271492	26271492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014298-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	35	459	0	ENST00000305910.3:c.121C>T	p.Arg41Cys	p.R41C	ENST00000305910	NM_003534.2	41	Cgc/Tgc					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	174	253	1	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	572	222	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120479949	120479949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	224	286	0	ENST00000256646.2:c.3478C>T	p.His1160Tyr	p.H1160Y	ENST00000256646	NM_024408.3	1160	Cac/Tac					NEWRECORD																																																																									
CTLA4	0	MSKCC	GRCh37	2	204737508	204737508	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	154	207	0	ENST00000302823.3:c.645T>A	p.Phe215Leu	p.F215L	ENST00000302823	NM_005214.4	215	ttT/ttA					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108213964	108213964	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	249	173	0	ENST00000278616.4:c.8284C>T	p.Gln2762Ter	p.Q2762*	ENST00000278616	NM_000051.3	2762	Cag/Tag					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63531745	63531745	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1657	240	308	0	ENST00000307078.5:c.2236G>C	p.Asp746His	p.D746H	ENST00000307078	NM_004655.3	746	Gat/Cat					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600329	10600329	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	809	307	2	ENST00000171111.5:c.1526G>C	p.Gly509Ala	p.G509A	ENST00000171111	NM_203500.1	509	gGg/gCg					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53231036	53231036	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	494	159	0	ENST00000375401.3:c.1866G>T	p.Trp622Cys	p.W622C	ENST00000375401	NM_004187.3	622	tgG/tgT					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220613	1220615	+	frameshift_variant	Frame_Shift_Del	DEL	CGG	CGG	TT			P-0011186-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	726	341	1	ENST00000326873.7:c.631_633delinsTT	p.Arg211LeufsTer76	p.R211Lfs*76	ENST00000326873	NM_000455.4	211	CGG/TT					NEWRECORD																																																																									
MYD88	0	MSKCC	GRCh37	3	38182641	38182641	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	32	366	2	ENST00000396334.3:c.794T>C	p.Leu265Pro	p.L265P	ENST00000396334	NM_002468.4	265	cTg/cCg					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156849823	156849823	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	86	578	0	ENST00000524377.1:c.2079G>C	p.Trp693Cys	p.W693C	ENST00000524377	NM_002529.3	693	tgG/tgC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	169	952	0	ENST00000269305.4:c.638G>C	p.Arg213Pro	p.R213P	ENST00000269305	NM_001126112.2	213	cGa/cCa					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37871592	37871592	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1179	88	1042	1	ENST00000269571.5:c.1202A>T	p.Glu401Val	p.E401V	ENST00000269571		401	gAg/gTg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117662464	117662464	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014430-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	102	557	1	ENST00000368508.3:c.4913G>T	p.Cys1638Phe	p.C1638F	ENST00000368508	NM_002944.2	1638	tGc/tTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	54	639	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86649005	86649005	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	44	536	1	ENST00000274376.6:c.1285G>T	p.Glu429Ter	p.E429*	ENST00000274376	NM_002890.2	429	Gaa/Taa					NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189586419	189586419	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	49	321	0	ENST00000264731.3:c.1043C>T	p.Pro348Leu	p.P348L	ENST00000264731	NM_003722.4	348	cCa/cTa					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0014008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	13	210	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51						NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0014008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	13	210	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51						NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0014008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	13	210	0	ENST00000304494.5:c.151-1G>C		p.X51_splice	ENST00000304494	NM_000077.4	51						NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38274851	38274851	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	171	418	0	ENST00000425967.3:c.1729A>G	p.Asn577Asp	p.N577D	ENST00000425967	NM_001174067.1	577	Aac/Gac					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10260328	10260328	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148987580		P-0013715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	117	390	1	ENST00000340748.4:c.2339C>T	p.Thr780Met	p.T780M	ENST00000340748		780	aCg/aTg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696435	47696435	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	222	645	0	ENST00000347630.2:c.388G>C	p.Asp130His	p.D130H	ENST00000347630	NM_001007230.1	130	Gac/Cac					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68857531	68857531	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0013715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	75	313	0	ENST00000261769.5:c.2164+2T>C		p.X722_splice	ENST00000261769	NM_004360.3	722						NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36252920	36252920	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	202	615	0	ENST00000300305.3:c.442del	p.Thr148ProfsTer4	p.T148Pfs*4	ENST00000300305		148	Acc/cc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878355	151878361	+	frameshift_variant	Frame_Shift_Del	DEL	TGATTTG	TGATTTG	-			P-0013715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	173	678	0	ENST00000262189.6:c.6584_6590del	p.Thr2195ArgfsTer42	p.T2195Rfs*42	ENST00000262189	NM_170606.2	2195	aCAAATCAg/ag					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	73	253	0	ENST00000263967.3:c.1633G>C	p.Glu545Gln	p.E545Q	ENST00000263967	NM_006218.2	545	Gag/Cag					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49037966	49037966	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	167	479	0	ENST00000267163.4:c.2206C>T	p.Gln736Ter	p.Q736*	ENST00000267163	NM_000321.2	736	Cag/Tag					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	247	459	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	262	590	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039435	49039435	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	304	640	0	ENST00000267163.4:c.2420C>G	p.Ser807Ter	p.S807*	ENST00000267163	NM_000321.2	807	tCa/tGa					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9780851	9780851	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	343	623	0	ENST00000377346.4:c.1573G>C	p.Glu525Gln	p.E525Q	ENST00000377346	NM_005026.3	525	Gag/Cag					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16257298	16257298	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	263	531	0	ENST00000375759.3:c.4563G>C	p.Glu1521Asp	p.E1521D	ENST00000375759	NM_015001.2	1521	gaG/gaC					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16257395	16257395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	252	454	0	ENST00000375759.3:c.4660G>A	p.Asp1554Asn	p.D1554N	ENST00000375759	NM_015001.2	1554	Gac/Aac					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16257569	16257569	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	330	679	0	ENST00000375759.3:c.4834G>C	p.Asp1612His	p.D1612H	ENST00000375759	NM_015001.2	1612	Gat/Cat					NEWRECORD																																																																									
CDKN2C	0	MSKCC	GRCh37	1	51439706	51439706	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	242	527	0	ENST00000262662.1:c.271G>C	p.Glu91Gln	p.E91Q	ENST00000262662		91	Gag/Cag					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243858964	243858964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	215	594	1	ENST00000263826.5:c.101C>T	p.Ser34Leu	p.S34L	ENST00000263826	NM_005465.4	34	tCa/tTa					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26022340	26022340	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	372	773	0	ENST00000435504.4:c.317C>T	p.Ser106Leu	p.S106L	ENST00000435504		106	tCa/tTa					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12650384	12650384	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	176	436	0	ENST00000251849.4:c.462C>G	p.Ile154Met	p.I154M	ENST00000251849	NM_002880.3	154	atC/atG					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163404	47163404	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	169	455	0	ENST00000409792.3:c.2722C>A	p.Leu908Met	p.L908M	ENST00000409792	NM_014159.6	908	Ctg/Atg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142178069	142178069	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	125	385	0	ENST00000350721.4:c.7349G>A	p.Trp2450Ter	p.W2450*	ENST00000350721	NM_001184.3	2450	tGg/tAg					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372432	55372432	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	320	892	0	ENST00000297316.4:c.1122G>C	p.Glu374Asp	p.E374D	ENST00000297316	NM_022454.3	374	gaG/gaC					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117869521	117869521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	1237	1047	1	ENST00000297338.2:c.673G>A	p.Asp225Asn	p.D225N	ENST00000297338	NM_006265.2	225	Gat/Aat					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117869584	117869584	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	1296	980	0	ENST00000297338.2:c.610G>A	p.Glu204Lys	p.E204K	ENST00000297338	NM_006265.2	204	Gag/Aag					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039399	49039399	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	445	876	0	ENST00000267163.4:c.2384C>T	p.Ser795Leu	p.S795L	ENST00000267163	NM_000321.2	795	tCa/tTa					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41991316	41991316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	514	1131	0	ENST00000219905.7:c.2147C>T	p.Thr716Ile	p.T716I	ENST00000219905	NM_001164273.1	716	aCt/aTt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68844139	68844139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	289	591	0	ENST00000261769.5:c.727G>C	p.Glu243Gln	p.E243Q	ENST00000261769	NM_004360.3	243	Gag/Cag					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412596	63412596	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	260	300	0	ENST00000330258.3:c.571G>C	p.Glu191Gln	p.E191Q	ENST00000330258	NM_152424.3	191	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	209	679	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33793030	33793030	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	64	189	1	ENST00000498907.2:c.291del	p.Thr98ArgfsTer62	p.T98Rfs*62	ENST00000498907	NM_004364.3	97	ccC/cc					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56160759	56160759	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0013762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	126	440	0	ENST00000399503.3:c.1033C>T	p.Gln345Ter	p.Q345*	ENST00000399503	NM_005921.1	345	Cag/Tag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56176572	56176572	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013762-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	109	384	0	ENST00000399503.3:c.2122G>T	p.Glu708Ter	p.E708*	ENST00000399503	NM_005921.1	708	Gaa/Taa					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			854	28	564	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0014379-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	20	244	1				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	132	635	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	60	312	0	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55						NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64573142	64573142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	120	627	0	ENST00000337652.1:c.1165G>T	p.Glu389Ter	p.E389*	ENST00000337652	NM_130803.2	389	Gag/Tag					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1624	287	471	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	874	434	2	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49033905	49033905	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	392	462	1	ENST00000267163.4:c.2042G>A	p.Trp681Ter	p.W681*	ENST00000267163	NM_000321.2	681	tGg/tAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0010793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	311	404	1	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209104681	209104681	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	118	461	0	ENST00000345146.2:c.897T>A	p.Asp299Glu	p.D299E	ENST00000345146	NM_005896.2	299	gaT/gaA					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49936526	49936526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010793-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	537	812	1	ENST00000296474.3:c.1401G>T	p.Met467Ile	p.M467I	ENST00000296474	NM_002447.2	467	atG/atT					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	101	194	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2969666	2969666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	537	732	0	ENST00000396946.4:c.1613C>T	p.Ser538Phe	p.S538F	ENST00000396946	NM_032415.4	538	tCc/tTc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0012420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	799	386	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135796795	135796795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	336	466	1	ENST00000298552.3:c.692C>T	p.Pro231Leu	p.P231L	ENST00000298552	NM_001162426.1	231	cCg/cTg					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202131455	202131455	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	221	364	0	ENST00000358485.4:c.423A>C	p.Arg141Ser	p.R141S	ENST00000358485	NM_001080125.1	141	agA/agC					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117710639	117710639	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	282	549	0	ENST00000368508.3:c.1633T>A	p.Leu545Met	p.L545M	ENST00000368508	NM_002944.2	545	Ttg/Atg					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005036	150005036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	196	316	0	ENST00000253339.5:c.1189C>T	p.Pro397Ser	p.P397S	ENST00000253339		397	Cct/Tct					NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139811032	139811032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	438	856	1	ENST00000247668.2:c.643C>T	p.Pro215Ser	p.P215S	ENST00000247668	NM_021138.3	215	Cct/Tct					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692827	89692827	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	123	166	0	ENST00000371953.3:c.311T>C	p.Phe104Ser	p.F104S	ENST00000371953	NM_000314.4	104	tTt/tCt					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133249230	133249230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	608	502	0	ENST00000320574.5:c.1669C>T	p.Pro557Ser	p.P557S	ENST00000320574	NM_006231.2	557	Cct/Tct					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23641289	23641289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	270	411	0	ENST00000261584.4:c.2186C>T	p.Pro729Leu	p.P729L	ENST00000261584	NM_024675.3	729	cCc/cTc					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41736919	41736919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	323	564	0	ENST00000301178.4:c.634G>A	p.Gly212Arg	p.G212R	ENST00000301178	NM_021913.4	212	Ggg/Agg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	45	413	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578555	7578555	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs868137297		P-0010124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	91	411	0	ENST00000269305.4:c.376-1G>A		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56176975	56177003	+	frameshift_variant	Frame_Shift_Del	DEL	AACAATTGGCAAGAACTTCTTGGCCGCCT	AACAATTGGCAAGAACTTCTTGGCCGCCT	-			P-0010124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	43	540	0	ENST00000399503.3:c.2245_2273del	p.Asn749LeufsTer5	p.N749Lfs*5	ENST00000399503	NM_005921.1	749	AACAATTGGCAAGAACTTCTTGGCCGCCTt/t					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55259524	55259524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	189	518	0	ENST00000275493.2:c.2582T>A	p.Leu861Gln	p.L861Q	ENST00000275493	NM_005228.3	861	cTg/cAg					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143044462	143044462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	214	749	0	ENST00000262992.4:c.2000G>T	p.Gly667Val	p.G667V	ENST00000262992	NM_001101669.1	667	gGa/gTa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249028	55249028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	157	594	0	ENST00000275493.2:c.2326C>T	p.Arg776Cys	p.R776C	ENST00000275493	NM_005228.3	776	Cgc/Tgc					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81399277	81399277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	133	440	0	ENST00000222390.5:c.11C>A	p.Thr4Asn	p.T4N	ENST00000222390	NM_000601.4	4	aCc/aAc					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117861193	117861193	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2037	324	894	0	ENST00000297338.2:c.1696G>A	p.Gly566Ser	p.G566S	ENST00000297338	NM_006265.2	566	Ggt/Agt					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410978	63410978	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013997-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	235	865	0	ENST00000330258.3:c.2189C>A	p.Pro730Gln	p.P730Q	ENST00000330258	NM_152424.3	730	cCa/cAa					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0001184-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			350	277	371	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64571965	64571965	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001184-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			780	723	730	0	ENST00000337652.1:c.1689G>A	p.Met563Ile	p.M563I	ENST00000337652	NM_130803.2	563	atG/atA					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16265876	16265886	+	frameshift_variant	Frame_Shift_Del	DEL	TCTCCAACATC	TCTCCAACATC	-			P-0001184-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1236	473	661	0	ENST00000375759.3:c.10954_10964del	p.Asn3652ProfsTer13	p.N3652Pfs*13	ENST00000375759	NM_015001.2	3650	aTCTCCAACATC/a					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181431018	181431018	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0001184-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			761	105	339	1	ENST00000325404.1:c.870C>A	p.Ser290Arg	p.S290R	ENST00000325404	NM_003106.3	290	agC/agA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	262	404	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	178	406	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405541	70405541	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs72799515		P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			117	184	326	0	ENST00000373644.4:c.3055A>G	p.Lys1019Glu	p.K1019E	ENST00000373644	NM_030625.2	1019	Aaa/Gaa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9862850	9862850	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	226	540	0	ENST00000330684.3:c.2453C>T	p.Ala818Val	p.A818V	ENST00000330684	NM_001134407.1	818	gCg/gTg					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248487	59248487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	123	515	1	ENST00000371222.2:c.256G>T	p.Gly86Trp	p.G86W	ENST00000371222	NM_002228.3	86	Ggg/Tgg					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189584586	189584586	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	115	417	0	ENST00000264731.3:c.882G>C	p.Gln294His	p.Q294H	ENST00000264731	NM_003722.4	294	caG/caC					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154972	112154972	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	273	501	0	ENST00000257430.4:c.1243G>A	p.Ala415Thr	p.A415T	ENST00000257430	NM_000038.5	415	Gct/Act					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120658	94120658	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	258	931	0	ENST00000369303.4:c.393C>G	p.Asp131Glu	p.D131E	ENST00000369303	NM_004440.3	131	gaC/gaG					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55229241	55229241	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	108	444	0	ENST00000275493.2:c.1548G>A	p.Trp516Ter	p.W516*	ENST00000275493	NM_005228.3	516	tgG/tgA					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8331600	8331600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	156	637	0	ENST00000356435.5:c.5516C>A	p.Pro1839His	p.P1839H	ENST00000356435		1839	cCc/cAc					NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139815652	139815652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	359	677	4	ENST00000247668.2:c.1123G>A	p.Ala375Thr	p.A375T	ENST00000247668	NM_021138.3	375	Gcc/Acc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88576277	88576277	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	78	221	0	ENST00000360948.2:c.1397-1G>T		p.X466_splice	ENST00000360948	NM_001012338.2	466						NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141493	11141493	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs11537675		P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	256	524	0	ENST00000344626.4:c.3470G>T	p.Arg1157Leu	p.R1157L	ENST00000344626	NM_003072.3	1157	cGg/cTg					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48649578	48649578	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	127	867	1	ENST00000376670.3:c.62C>A	p.Pro21His	p.P21H	ENST00000376670	NM_002049.3	21	cCt/cAt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70352243	70352243	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	71	654	0	ENST00000374080.3:c.4270G>A	p.Gly1424Ser	p.G1424S	ENST00000374080		1424	Ggt/Agt					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100629579	100629579	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	71	780	0	ENST00000308731.7:c.185C>A	p.Thr62Asn	p.T62N	ENST00000308731	NM_000061.2	62	aCt/aAt					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80537177	80537177	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	56	257	0	ENST00000286548.4:c.221del	p.Gly74AlafsTer17	p.G74Afs*17	ENST00000286548	NM_002072.3	74	gGc/gc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484349	8484349	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	26	162	0	ENST00000356435.5:c.3183A>C	p.Glu1061Asp	p.E1061D	ENST00000356435		1061	gaA/gaC					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412043	116412043	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0010466-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	134	136	0	ENST00000397752.3:c.3028+1del		p.D1010fs	ENST00000397752	NM_000245.2	1010	Gat/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	248	589	2	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135787737	135787737	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0012246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	278	717	0	ENST00000298552.3:c.845C>G	p.Ser282Ter	p.S282*	ENST00000298552	NM_001162426.1	282	tCa/tGa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023895	27023895	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	205	210	0	ENST00000324856.7:c.1001C>A	p.Ser334Ter	p.S334*	ENST00000324856	NM_006015.4	334	tCg/tAg					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88659794	88659794	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	209	612	0	ENST00000372037.3:c.441T>A	p.Phe147Leu	p.F147L	ENST00000372037	NM_004329.2	147	ttT/ttA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	129	546	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40827892	40827892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	170	833	1	ENST00000373198.4:c.2536G>A	p.Val846Ile	p.V846I	ENST00000373198	NM_133170.3	846	Gtc/Atc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134884881	134884881	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	138	780	1	ENST00000398015.3:c.1657G>A	p.Val553Ile	p.V553I	ENST00000398015	NM_004441.4	553	Gtt/Att					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	66	252	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	166	392	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108142016	108142016	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	104	334	1	ENST00000278616.4:c.2960G>T	p.Cys987Phe	p.C987F	ENST00000278616	NM_000051.3	987	tGt/tTt					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119148967	119148967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	85	365	1	ENST00000264033.4:c.1187G>T	p.Cys396Phe	p.C396F	ENST00000264033	NM_005188.3	396	tGt/tTt					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1612319	1612319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	91	762	1	ENST00000344749.5:c.1700G>A	p.Arg567Gln	p.R567Q	ENST00000344749	NM_001136139.2	567	cGg/cAg					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99160363	99160363	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	59	426	0	ENST00000074304.5:c.842G>T	p.Gly281Val	p.G281V	ENST00000074304	NM_001134224.1	281	gGa/gTa					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212252716	212252716	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	53	217	0	ENST00000342788.4:c.3137G>T	p.Ser1046Ile	p.S1046I	ENST00000342788	NM_005235.2	1046	aGt/aTt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713718	30713718	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	39	248	0	ENST00000359013.4:c.1118G>T	p.Arg373Leu	p.R373L	ENST00000359013	NM_001024847.2	373	cGc/cTc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70346284	70346284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	89	510	1	ENST00000374080.3:c.2635C>A	p.Leu879Ile	p.L879I	ENST00000374080		879	Ctc/Atc					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100617622	100617622	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013701-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	149	570	0	ENST00000308731.7:c.447T>A	p.Asp149Glu	p.D149E	ENST00000308731	NM_000061.2	149	gaT/gaA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	72	541	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	182	629	1	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65543379	65543397	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGACTAAAAGGCAACCAAG	GGACTAAAAGGCAACCAAG	-			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			488	87	548	0	ENST00000358664.4:c.296-16_298del		p.X99_splice	ENST00000358664	NM_002382.4	99						NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67590418	67590418	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	76	355	0	ENST00000274335.5:c.1482del	p.Phe494LeufsTer16	p.F494Lfs*16	ENST00000274335		494	Ttt/tt					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32166321	32166321	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1027	105	747	1	ENST00000375023.3:c.4633C>A	p.Pro1545Thr	p.P1545T	ENST00000375023	NM_004557.3	1545	Cca/Aca					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93956596	93956597	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	77	496	1	ENST00000369303.4:c.2639_2640delinsTT	p.Arg880Ile	p.R880I	ENST00000369303	NM_004440.3	880	aGG/aTT					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2976842	2976842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			765	138	691	0	ENST00000396946.4:c.1170G>T	p.Gln390His	p.Q390H	ENST00000396946	NM_032415.4	390	caG/caT					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106523591	106523591	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	85	475	0	ENST00000359195.3:c.2743T>A	p.Ser915Thr	p.S915T	ENST00000359195	NM_002649.2	915	Tcc/Acc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945020	151945020	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015056-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			137	23	82	0	ENST00000262189.6:c.2499A>T	p.Arg833Ser	p.R833S	ENST00000262189	NM_170606.2	833	agA/agT					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009297-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			374	104	351	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009297-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			374	104	351	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009297-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			374	104	351	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009297-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			659	252	538	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89468382	89468382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009297-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			234	69	295	2	ENST00000336596.2:c.1916G>A	p.Arg639His	p.R639H	ENST00000336596	NM_005233.5	639	cGc/cAc					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243675729	243675729	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0009297-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			413	82	247	0	ENST00000263826.5:c.1252-1G>A		p.X418_splice	ENST00000263826	NM_005465.4	418						NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89391076	89391076	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009297-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			898	223	545	0	ENST00000336596.2:c.1142G>C	p.Arg381Pro	p.R381P	ENST00000336596	NM_005233.5	381	cGc/cCc					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57751576	57751576	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009297-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			667	178	558	0	ENST00000274289.3:c.1415C>A	p.Ala472Glu	p.A472E	ENST00000274289	NM_006622.3	472	gCa/gAa					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120464372	120464387	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGTGTTCACTTGTT	CCAGTGTTCACTTGTT	-			P-0009297-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			902	65	792	2	ENST00000256646.2:c.5259_5274del	p.Thr1754SerfsTer11	p.T1754Sfs*11	ENST00000256646	NM_024408.3	1753	ggAACAAGTGAACACTGG/gg					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138433477	138433477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009297-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			985	71	537	0	ENST00000289153.2:c.1135C>T	p.His379Tyr	p.H379Y	ENST00000289153	NM_006219.2	379	Cat/Tat					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138433537	138433537	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009297-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			733	47	455	0	ENST00000289153.2:c.1075C>T	p.His359Tyr	p.H359Y	ENST00000289153	NM_006219.2	359	Cat/Tat					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0011133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	470	489	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48878062	48878062	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	93	276	1	ENST00000267163.4:c.19del	p.Arg7GlufsTer58	p.R7Efs*58	ENST00000267163	NM_000321.2	5	aCc/ac					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	63	779	0	ENST00000256078.4:c.183A>T	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caT					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151879626	151879628	+	frameshift_variant	Frame_Shift_Del	DEL	AAG	AAG	T			P-0015009-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			332	18	282	0	ENST00000262189.6:c.5317_5319delinsA	p.Leu1773ArgfsTer6	p.L1773Rfs*6	ENST00000262189	NM_170606.2	1773	CTT/A					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	237	449	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71101710	71101712	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0014716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	126	281	0	ENST00000318789.4:c.486_488del	p.Gln162del	p.Q162del	ENST00000318789	NM_032682.5	162	caACAt/cat					NEWRECORD																																																																									
TCEB1	0	MSKCC	GRCh37	8	74868265	74868265	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014716-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	378	783	0	ENST00000284811.8:c.29G>C	p.Gly10Ala	p.G10A	ENST00000284811		10	gGc/gCc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	271	581	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	413	699	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0012859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	237	598	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178097211	178097211	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	91	669	0	ENST00000397062.3:c.503C>T	p.Ser168Phe	p.S168F	ENST00000397062	NM_006164.4	168	tCt/tTt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117647511	117647511	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	235	748	2	ENST00000368508.3:c.5433C>A	p.Cys1811Ter	p.C1811*	ENST00000368508	NM_002944.2	1811	tgC/tgA					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729438	41729438	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1647	339	1088	0	ENST00000242208.4:c.1091C>G	p.Ser364Cys	p.S364C	ENST00000242208	NM_002192.2	364	tCc/tGc					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38272409	38272409	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	167	669	0	ENST00000425967.3:c.1958G>A	p.Arg653Gln	p.R653Q	ENST00000425967	NM_001174067.1	653	cGa/cAa					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8097781	8097781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	70	776	1	ENST00000346208.3:c.163G>A	p.Gly55Ser	p.G55S	ENST00000346208		55	Ggt/Agt					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73336274	73336274	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0012859-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	80	250	0	ENST00000377767.4:c.2129A>C	p.Asn710Thr	p.N710T	ENST00000377767	NM_014953.3	710	aAt/aCt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	36	619	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0013792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	163	367	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974777	21974780	+	frameshift_variant	Frame_Shift_Del	DEL	GCCA	GCCA	-	rs587782206		P-0013792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	163	367	0	ENST00000304494.5:c.47_50del	p.Leu16ProfsTer9	p.L16Pfs*9	ENST00000304494	NM_000077.4	16	cTGGCc/cc					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215610446	215610446	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	40	590	1	ENST00000260947.4:c.1810G>A	p.Val604Ile	p.V604I	ENST00000260947	NM_000465.2	604	Gta/Ata					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578188	7578197	+	frameshift_variant	Frame_Shift_Del	DEL	CATAGGGCAC	CATAGGGCAC	-			P-0013792-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	134	879	0	ENST00000269305.4:c.652_661del	p.Val218SerfsTer26	p.V218Sfs*26	ENST00000269305	NM_001126112.2	218	GTGCCCTATGag/ag					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12645690	12645690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	215	443	0	ENST00000251849.4:c.779C>A	p.Thr260Lys	p.T260K	ENST00000251849	NM_002880.3	260	aCa/aAa					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670838	134670838	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	62	144	0	ENST00000398015.3:c.749T>C	p.Ile250Thr	p.I250T	ENST00000398015	NM_004441.4	250	aTt/aCt					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099733	157099733	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	39	118	0	ENST00000346085.5:c.670C>T	p.Pro224Ser	p.P224S	ENST00000346085	NM_020732.3	224	Ccg/Tcg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89349860	89349860	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2342	344	1577	0	ENST00000301030.4:c.3090G>C	p.Glu1030Asp	p.E1030D	ENST00000301030	NM_001256183.1	1030	gaG/gaC					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221962	1221962	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	301	568	0	ENST00000326873.7:c.877G>T	p.Glu293Ter	p.E293*	ENST00000326873	NM_000455.4	293	Gaa/Taa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602757	10602757	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010231-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	148	388	0	ENST00000171111.5:c.821A>T	p.His274Leu	p.H274L	ENST00000171111	NM_203500.1	274	cAc/cTc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	335	511	0	ENST00000349496.5:c.95A>C	p.Asp32Ala	p.D32A	ENST00000349496	NM_001904.3	32	gAc/gCc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916930	178916933	+	missense_variant	Missense_Mutation	ONP	GCAA	GCAA	TCAG			P-0010746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1350	459	798	0	ENST00000263967.3:c.317_320delinsTCAG	p.Gly106_Asn107delinsValSer	p.G106_N107delinsVS	ENST00000263967	NM_006218.2	106	gGCAAc/gTCAGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	174	714	0	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602289	10602290	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0014771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			881	74	655	3	ENST00000171111.5:c.1288_1289delinsTT	p.Gly430Phe	p.G430F	ENST00000171111	NM_203500.1	430	GGc/TTc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117686239	117686239	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	44	275	0	ENST00000368508.3:c.3102del	p.Arg1035GlufsTer45	p.R1035Efs*45	ENST00000368508	NM_002944.2	1034	ctT/ct					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341089	8341089	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0014771-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			556	45	447	0	ENST00000356435.5:c.5126+1G>T		p.X1709_splice	ENST00000356435		1709						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	149	273	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	341	438	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189455644	189455644	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	164	337	0	ENST00000264731.3:c.178G>A	p.Asp60Asn	p.D60N	ENST00000264731	NM_003722.4	60	Gat/Aat					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1003	183	523	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt					NEWRECORD																																																																									
PPP6C	0	MSKCC	GRCh37	9	127912080	127912080	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	507	855	1	ENST00000373547.4:c.790C>T	p.Arg264Cys	p.R264C	ENST00000373547	NM_002721.4	264	Cgt/Tgt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	343	367	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57858947	57858947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	520	986	2	ENST00000228682.2:c.443C>T	p.Ser148Phe	p.S148F	ENST00000228682	NM_005269.2	148	tCc/tTc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117641174	117641174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2009	242	842	0	ENST00000368508.3:c.5797G>A	p.Glu1933Lys	p.E1933K	ENST00000368508	NM_002944.2	1933	Gag/Aag					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10251817	10251817	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200950656		P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1058	384	697	1	ENST00000340748.4:c.3310C>T	p.Arg1104Cys	p.R1104C	ENST00000340748		1104	Cgt/Tgt					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561130	9561130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	209	437	0	ENST00000353224.5:c.652G>A	p.Glu218Lys	p.E218K	ENST00000353224	NM_177990.2	218	Gag/Aag					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41385271	41385271	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	249	427	0	ENST00000373198.4:c.690G>A	p.Trp230Ter	p.W230*	ENST00000373198	NM_133170.3	230	tgG/tgA					NEWRECORD																																																																									
INSRR	0	MSKCC	GRCh37	1	156812033	156812033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	106	180	0	ENST00000368195.3:c.3268G>A	p.Gly1090Arg	p.G1090R	ENST00000368195	NM_014215.2	1090	Ggg/Agg					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178097997	178097997	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	171	360	0	ENST00000397062.3:c.383C>T	p.Pro128Leu	p.P128L	ENST00000397062	NM_006164.4	128	cCg/cTg					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227662175	227662175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			959	281	553	0	ENST00000305123.5:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000305123	NM_005544.2	427	tCc/tTc					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55141020	55141020	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	130	476	0	ENST00000257290.5:c.1666G>A	p.Glu556Lys	p.E556K	ENST00000257290	NM_006206.4	556	Gaa/Aaa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106162541	106162541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	229	380	0	ENST00000380013.4:c.3455G>A	p.Gly1152Glu	p.G1152E	ENST00000380013	NM_001127208.2	1152	gGa/gAa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187629043	187629043	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	122	364	0	ENST00000441802.2:c.1939G>A	p.Ala647Thr	p.A647T	ENST00000441802	NM_005245.3	647	Gct/Act					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149460582	149460582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	161	317	0	ENST00000286301.3:c.55G>A	p.Gly19Arg	p.G19R	ENST00000286301	NM_005211.3	19	Gga/Aga					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32170312	32170312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	331	340	0	ENST00000375023.3:c.3296G>A	p.Gly1099Glu	p.G1099E	ENST00000375023	NM_004557.3	1099	gGa/gAa					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729504	41729504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1309	975	929	0	ENST00000242208.4:c.1025C>T	p.Pro342Leu	p.P342L	ENST00000242208	NM_002192.2	342	cCc/cTc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339361	116339361	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1011	160	391	0	ENST00000397752.3:c.223G>A	p.Glu75Lys	p.E75K	ENST00000397752	NM_000245.2	75	Gag/Aag					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8501060	8501060	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	180	286	0	ENST00000356435.5:c.1823-1G>A		p.X608_splice	ENST00000356435		608						NEWRECORD																																																																									
PPP6C	0	MSKCC	GRCh37	9	127915934	127915934	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1523	226	834	1	ENST00000373547.4:c.547C>T	p.Gln183Ter	p.Q183*	ENST00000373547	NM_002721.4	183	Cag/Tag					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102206711	102206711	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	212	584	0	ENST00000263464.3:c.1339A>T	p.Ile447Phe	p.I447F	ENST00000263464	NM_001165.4	447	Atc/Ttc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344438	118344438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	129	270	0	ENST00000534358.1:c.2564C>T	p.Pro855Leu	p.P855L	ENST00000534358	NM_005933.3	855	cCc/cTc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118359392	118359392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	147	469	0	ENST00000534358.1:c.4396C>T	p.Pro1466Ser	p.P1466S	ENST00000534358	NM_005933.3	1466	Cct/Tct					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46244196	46244196	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	49	480	0	ENST00000334344.6:c.2290C>T	p.His764Tyr	p.H764Y	ENST00000334344	NM_152641.2	764	Cac/Tac					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865047	57865047	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61734542		P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	536	1029	0	ENST00000228682.2:c.2524C>T	p.Pro842Ser	p.P842S	ENST00000228682	NM_005269.2	842	Cca/Tca					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29012462	29012462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	37	396	0	ENST00000282397.4:c.409G>A	p.Glu137Lys	p.E137K	ENST00000282397	NM_002019.4	137	Gag/Aag					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678625	88678625	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	74	169	0	ENST00000360948.2:c.911C>T	p.Pro304Leu	p.P304L	ENST00000360948	NM_001012338.2	304	cCc/cTc					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1625640	1625640	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1362	374	752	0	ENST00000344749.5:c.434G>A	p.Gly145Glu	p.G145E	ENST00000344749	NM_001136139.2	145	gGg/gAg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5231555	5231555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	191	317	0	ENST00000357368.4:c.1921C>T	p.Pro641Ser	p.P641S	ENST00000357368	NM_002850.3	641	Ccg/Tcg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41385247	41385247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	274	500	0	ENST00000373198.4:c.714G>A	p.Met238Ile	p.M238I	ENST00000373198	NM_133170.3	238	atG/atA					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765844	66765844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1078	361	631	3	ENST00000374690.3:c.856C>T	p.Pro286Ser	p.P286S	ENST00000374690	NM_000044.3	286	Cca/Tca					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692801	89692821	+	inframe_deletion	In_Frame_Del	DEL	ACCACAGCTAGAACTTATCAA	ACCACAGCTAGAACTTATCAA	-			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	116	273	0	ENST00000371953.3:c.288_308del	p.Gln97_Pro103del	p.Q97_P103del	ENST00000371953	NM_000314.4	95	ccACCACAGCTAGAACTTATCAAa/cca					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27092990	27092997	+	frameshift_variant	Frame_Shift_Del	DEL	AGTTAACT	AGTTAACT	-			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	258	577	0	ENST00000324856.7:c.2921_2928del	p.Lys974ThrfsTer30	p.K974Tfs*30	ENST00000324856	NM_006015.4	974	aAGTTAACT/a					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106547370	106547372	+	missense_variant	Missense_Mutation	ONP	GAC	GAC	AAG			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	394	378	0	ENST00000369096.4:c.607_609delinsAAG	p.Asp203Lys	p.D203K	ENST00000369096	NM_001198.3	203	GAC/AAG					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518033	8518034	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	129	617	0	ENST00000356435.5:c.1357_1358delinsAA	p.Val453Asn	p.V453N	ENST00000356435		453	GTt/AAt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48947540	48947541	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	40	321	0	ENST00000267163.4:c.1128-1_1128delinsAA		p.X376_splice	ENST00000267163	NM_000321.2	376						NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105242063	105242064	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	388	714	0	ENST00000349310.3:c.360_361delinsTT	p.Arg121Trp	p.R121W	ENST00000349310	NM_001014432.1	120	ttCCgg/ttTTgg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15273372	15273373	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	CC	CC	TT			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	226	520	0	ENST00000263388.2:c.5816_5817delinsAA	p.Gly1939Glu	p.G1939E	ENST00000263388	NM_000435.2	1939	gGG/gAA					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39762932	39762933	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0013166-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	194	405	0	ENST00000288319.7:c.903_904delinsTT	p.Arg302Cys	p.R302C	ENST00000288319	NM_182918.3	301	agCCgc/agTTgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0012437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	164	580	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295321	1295321	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0012437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	82	471	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46254623	46254623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	160	593	1	ENST00000334344.6:c.4813G>T	p.Gly1605Cys	p.G1605C	ENST00000334344	NM_152641.2	1605	Ggc/Tgc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29008210	29008210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	88	532	0	ENST00000282397.4:c.661C>T	p.Leu221Phe	p.L221F	ENST00000282397	NM_002019.4	221	Ctc/Ttc					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14024687	14024687	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	62	572	0	ENST00000311895.7:c.913A>G	p.Thr305Ala	p.T305A	ENST00000311895	NM_005236.2	305	Aca/Gca					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47032535	47032535	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	100	377	0	ENST00000329236.7:c.211del	p.Gln71SerfsTer14	p.Q71Sfs*14	ENST00000329236	NM_001204466.1	70	ggC/gg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577077	7577082	+	inframe_deletion	In_Frame_Del	DEL	CTCTTC	CTCTTC	-			P-0010645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	91	459	0	ENST00000269305.4:c.856_861del	p.Glu286_Glu287del	p.E286_E287del	ENST00000269305	NM_001126112.2	286	GAAGAG/-					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106180816	106180816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	99	339	0	ENST00000380013.4:c.3844G>T	p.Gly1282Cys	p.G1282C	ENST00000380013	NM_001127208.2	1282	Ggt/Tgt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117710641	117710641	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	64	425	0	ENST00000368508.3:c.1631A>T	p.Asn544Ile	p.N544I	ENST00000368508	NM_002944.2	544	aAc/aTc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765348	66765348	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	82	286	0	ENST00000374690.3:c.360G>T	p.Gln120His	p.Q120H	ENST00000374690	NM_000044.3	120	caG/caT					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	52	284	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0013588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	114	615	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099362	27099363	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	71	617	0	ENST00000324856.7:c.3600_3601del	p.Lys1201AlafsTer18	p.K1201Afs*18	ENST00000324856	NM_006015.4	1200	cAG/c					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692971	89692989	+	frameshift_variant	Frame_Shift_Del	DEL	TAGATTTCTATGGGGAAGT	TAGATTTCTATGGGGAAGT	CG			P-0013588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	50	365	2	ENST00000371953.3:c.455_473delinsCG	p.Leu152ProfsTer22	p.L152Pfs*22	ENST00000371953	NM_000314.4	152	cTAGATTTCTATGGGGAAGTa/cCGa					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18443919	18443919	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	74	437	0	ENST00000266497.5:c.892A>G	p.Thr298Ala	p.T298A	ENST00000266497		298	Aca/Gca					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67655344	67655344	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0013588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	68	543	0	ENST00000264010.4:c.1210del		p.X404_splice	ENST00000264010	NM_006565.3	404						NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779440	3779440	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	51	571	0	ENST00000262367.5:c.5608G>C	p.Ala1870Pro	p.A1870P	ENST00000262367	NM_004380.2	1870	Gcc/Ccc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48878083	48878120	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCGCCG	CCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCGCCG	-			P-0011156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	25	151	0	ENST00000267163.4:c.43_80del	p.Ala15ProfsTer3	p.A15Pfs*3	ENST00000267163	NM_000321.2	12	aCCGCCGCCGCTGCCGCCGCGGAACCCCCGGCACCGCCG/a					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	132	773	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593491	48593494	+	frameshift_variant	Frame_Shift_Del	DEL	AGAC	AGAC	-			P-0012579-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	73	671	1	ENST00000342988.3:c.1245_1248del	p.Asp415GlufsTer20	p.D415Efs*20	ENST00000342988	NM_005359.5	414	ttAGAC/tt					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73336166	73336166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010799-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	380	481	1	ENST00000377767.4:c.2237G>A	p.Arg746His	p.R746H	ENST00000377767	NM_014953.3	746	cGc/cAc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	315	353	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916854	178916854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519929		P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	584	679	0	ENST00000263967.3:c.241G>A	p.Glu81Lys	p.E81K	ENST00000263967	NM_006218.2	81	Gaa/Aaa					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120527	70120527	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	48	260	0	ENST00000245479.2:c.1529G>C	p.Ter510SerextTer49	p.*510Sext*49	ENST00000245479	NM_000346.3	510	tGa/tCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	308	501	0	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333266	70333266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	89	450	0	ENST00000373644.4:c.1171G>A	p.Glu391Lys	p.E391K	ENST00000373644	NM_030625.2	391	Gag/Aag					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48951053	48951053	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	115	230	0	ENST00000267163.4:c.1216-1G>A		p.X406_splice	ENST00000267163	NM_000321.2	406						NEWRECORD																																																																									
RUNX1	861	MSKCC	GRCh37	21	36206722	36206722	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	208	305	0	ENST00000300305.3:c.790C>T	p.Gln264Ter	p.Q264*	ENST00000300305		264	Cag/Tag					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1615698	1615698	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145878545		P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	304	778	1	ENST00000344749.5:c.1573C>T	p.Arg525Trp	p.R525W	ENST00000344749	NM_001136139.2	525	Cgg/Tgg					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33793098	33793098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	82	339	0	ENST00000498907.2:c.223G>A	p.Asp75Asn	p.D75N	ENST00000498907	NM_004364.3	75	Gac/Aac					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48027263	48027263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	68	314	0	ENST00000234420.5:c.2141C>T	p.Ser714Phe	p.S714F	ENST00000234420	NM_000179.2	714	tCt/tTt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47103803	47103803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	115	531	0	ENST00000409792.3:c.6143G>C	p.Arg2048Thr	p.R2048T	ENST00000409792	NM_014159.6	2048	aGa/aCa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106180845	106180845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	83	323	0	ENST00000380013.4:c.3873G>C	p.Trp1291Cys	p.W1291C	ENST00000380013	NM_001127208.2	1291	tgG/tgC					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187525019	187525019	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	119	340	0	ENST00000441802.2:c.10661C>A	p.Ser3554Tyr	p.S3554Y	ENST00000441802	NM_005245.3	3554	tCt/tAt					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1264696	1264696	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	74	471	0	ENST00000310581.5:c.2666G>A	p.Arg889Gln	p.R889Q	ENST00000310581	NM_198253.2	889	cGa/cAa					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180055966	180055966	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	72	468	0	ENST00000261937.6:c.1019G>A	p.Gly340Glu	p.G340E	ENST00000261937	NM_182925.4	340	gGa/gAa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2983998	2983998	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	125	630	0	ENST00000396946.4:c.532G>C	p.Glu178Gln	p.E178Q	ENST00000396946	NM_032415.4	178	Gag/Cag					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106522607	106522607	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	220	432	0	ENST00000359195.3:c.2584C>G	p.Leu862Val	p.L862V	ENST00000359195	NM_002649.2	862	Cta/Gta					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98209376	98209376	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	59	340	0	ENST00000331920.6:c.4162G>C	p.Gly1388Arg	p.G1388R	ENST00000331920	NM_000264.3	1388	Ggg/Cgg					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70332161	70332161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	86	514	0	ENST00000373644.4:c.66G>C	p.Lys22Asn	p.K22N	ENST00000373644	NM_030625.2	22	aaG/aaC					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70406506	70406506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	224	409	1	ENST00000373644.4:c.4020C>G	p.Ile1340Met	p.I1340M	ENST00000373644	NM_030625.2	1340	atC/atG					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118352582	118352582	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	112	476	0	ENST00000534358.1:c.3787C>G	p.Pro1263Ala	p.P1263A	ENST00000534358	NM_005933.3	1263	Cca/Gca					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118373884	118373884	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	80	347	0	ENST00000534358.1:c.7277G>C	p.Arg2426Thr	p.R2426T	ENST00000534358	NM_005933.3	2426	aGa/aCa					NEWRECORD																																																																									
RAB35	0	MSKCC	GRCh37	12	120536692	120536692	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	255	649	1	ENST00000229340.5:c.400G>A	p.Asp134Asn	p.D134N	ENST00000229340	NM_006861.6	134	Gat/Aat					NEWRECORD																																																																									
RAB35	0	MSKCC	GRCh37	12	120554439	120554439	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	22	156	0	ENST00000229340.5:c.16G>C	p.Asp6His	p.D6H	ENST00000229340	NM_006861.6	6	Gac/Cac					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42057198	42057198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	66	601	0	ENST00000219905.7:c.7859C>T	p.Ser2620Phe	p.S2620F	ENST00000219905	NM_001164273.1	2620	tCt/tTt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15942864	15942864	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	294	478	0	ENST00000268712.3:c.6838G>C	p.Glu2280Gln	p.E2280Q	ENST00000268712	NM_006311.3	2280	Gag/Cag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29527439	29527439	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	59	220	0	ENST00000358273.4:c.889-1G>C		p.X297_splice	ENST00000358273	NM_001042492.2	297						NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40498688	40498688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	432	578	1	ENST00000264657.5:c.172C>T	p.His58Tyr	p.H58Y	ENST00000264657	NM_139276.2	58	Cat/Tat					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54961471	54961471	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	31	219	0	ENST00000312783.6:c.161C>T	p.Ser54Phe	p.S54F	ENST00000312783	NM_198436.1	54	tCc/tTc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70352286	70352286	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	74	617	0	ENST00000374080.3:c.4313C>T	p.Ser1438Leu	p.S1438L	ENST00000374080		1438	tCa/tTa					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47430385	47430385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012778-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	169	433	1	ENST00000377045.4:c.1660C>T	p.Arg554Trp	p.R554W	ENST00000377045	NM_001654.4	554	Cgg/Tgg					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149987	202149987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	55	550	0	ENST00000358485.4:c.1428G>T	p.Glu476Asp	p.E476D	ENST00000358485	NM_001080125.1	476	gaG/gaT					NEWRECORD																																																																									
SDHAF2	0	MSKCC	GRCh37	11	61197647	61197647	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	46	714	1	ENST00000301761.2:c.29C>A	p.Ser10Ter	p.S10*	ENST00000301761	NM_017841.2	10	tCg/tAg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162735796	162735796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	69	637	0	ENST00000367921.3:c.1105G>A	p.Ala369Thr	p.A369T	ENST00000367921	NM_006182.2	369	Gca/Aca					NEWRECORD																																																																									
EPCAM	0	MSKCC	GRCh37	2	47600634	47600634	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	41	603	0	ENST00000263735.4:c.109A>T	p.Asn37Tyr	p.N37Y	ENST00000263735	NM_002354.2	37	Aac/Tac					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61149543	61149543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	47	514	0	ENST00000295025.8:c.1733C>T	p.Ser578Leu	p.S578L	ENST00000295025	NM_002908.2	578	tCg/tTg					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117864938	117864938	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	58	618	0	ENST00000297338.2:c.1171C>T	p.Arg391Cys	p.R391C	ENST00000297338	NM_006265.2	391	Cgc/Tgc					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89685315	89685315	+	splice_donor_variant	Splice_Site	SNP	G	G	T	rs876658153		P-0013012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	39	271	0	ENST00000371953.3:c.209+1G>T		p.X70_splice	ENST00000371953	NM_000314.4	70						NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	43	325	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108142008	108142008	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	32	414	0	ENST00000278616.4:c.2952A>C	p.Gln984His	p.Q984H	ENST00000278616	NM_000051.3	984	caA/caC					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28877335	28877335	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	61	543	0	ENST00000282397.4:c.3986C>T	p.Ser1329Leu	p.S1329L	ENST00000282397	NM_002019.4	1329	tCg/tTg					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17945970	17945970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	53	706	1	ENST00000458235.1:c.1969C>T	p.Arg657Trp	p.R657W	ENST00000458235	NM_000215.3	657	Cgg/Tgg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41573890	41573890	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	62	543	0	ENST00000263253.7:c.6175A>G	p.Arg2059Gly	p.R2059G	ENST00000263253	NM_001429.3	2059	Agg/Ggg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339328	70339328	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0013012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	52	544	0	ENST00000374080.3:c.204+1G>T		p.X68_splice	ENST00000374080		68						NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72984420	72984421	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1394	88	898	0	ENST00000268489.5:c.3163_3164del	p.Leu1055AlafsTer23	p.L1055Afs*23	ENST00000268489	NM_006885.3	1055	CTg/g					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589663	67589673	+	splice_donor_variant,intron_variant	Splice_Site	DEL	GTGAGTTTTCT	GTGAGTTTTCT	-			P-0013012-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	27	172	0	ENST00000274335.5:c.1425+1_1425+11del		p.X475_splice	ENST00000274335		475						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	181	398	1	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112102086	112102086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	43	496	2	ENST00000257430.4:c.199G>A	p.Asp67Asn	p.D67N	ENST00000257430	NM_000038.5	67	Gat/Aat					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117739	70117741	+	frameshift_variant	Frame_Shift_Del	DEL	CCC	CCC	G			P-0010049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	314	636	0	ENST00000245479.2:c.207_209delinsG	p.Phe69LeufsTer182	p.F69Lfs*182	ENST00000245479	NM_000346.3	69	ttCCCc/ttGc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593661	55593661	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012028-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	357	385	0	ENST00000288135.5:c.1727T>C	p.Leu576Pro	p.L576P	ENST00000288135	NM_000222.2	576	cTt/cCt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	27	470	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599341	55599341	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	278	520	0	ENST00000288135.5:c.2467T>G	p.Tyr823Asp	p.Y823D	ENST00000288135	NM_000222.2	823	Tat/Gat					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27097736	27097736	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	489	681	1	ENST00000324856.7:c.3325C>T	p.Arg1109Trp	p.R1109W	ENST00000324856	NM_006015.4	1109	Cgg/Tgg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593590	55593607	+	inframe_deletion	In_Frame_Del	DEL	GTATGAAGTACAGTGGAA	GTATGAAGTACAGTGGAA	-			P-0014933-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			398	134	409	0	ENST00000288135.5:c.1657_1674del	p.Tyr553_Lys558del	p.Y553_K558del	ENST00000288135	NM_000222.2	552	atGTATGAAGTACAGTGGAAg/atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	65	848	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	70	693	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604754	48604754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	64	786	0	ENST00000342988.3:c.1576G>C	p.Glu526Gln	p.E526Q	ENST00000342988	NM_005359.5	526	Gaa/Caa					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105239326	105239326	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	67	797	0	ENST00000349310.3:c.1061A>T	p.His354Leu	p.H354L	ENST00000349310	NM_001014432.1	354	cAt/cTt					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89357089	89357089	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1442	101	932	0	ENST00000301030.4:c.545G>T	p.Arg182Leu	p.R182L	ENST00000301030	NM_001256183.1	182	cGg/cTg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29541604	29541604	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	20	306	0	ENST00000358273.4:c.1527+1G>A		p.X509_splice	ENST00000358273	NM_001042492.2	509						NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435917	56435917	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	39	543	0	ENST00000407977.2:c.1220G>C	p.Gly407Ala	p.G407A	ENST00000407977		407	gGa/gCa					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56436000	56436000	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	29	434	2	ENST00000407977.2:c.1137G>C	p.Gln379His	p.Q379H	ENST00000407977		379	caG/caC					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47028790	47028790	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1289	79	942	2	ENST00000329236.7:c.94C>T	p.Arg32Ter	p.R32*	ENST00000329236	NM_001204466.1	32	Cga/Tga					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	61	303	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	55	340	1	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56414737	56414737	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	130	927	0	ENST00000348428.3:c.2138C>T	p.Ala713Val	p.A713V	ENST00000348428	NM_006785.3	713	gCt/gTt					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0012655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	464	391	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	366	355	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	331	246	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2223187	2223187	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	401	431	0	ENST00000326181.6:c.799A>T	p.Thr267Ser	p.T267S	ENST00000326181	NM_032271.2	267	Acg/Tcg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70338671	70338671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	514	554	0	ENST00000374080.3:c.67G>T	p.Asp23Tyr	p.D23Y	ENST00000374080		23	Gat/Tat					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56492798	56492798	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	527	523	1	ENST00000407977.2:c.141del	p.Ile48SerfsTer3	p.I48Sfs*3	ENST00000407977		47	atT/at					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178928081	178928105	+	protein_altering_variant	In_Frame_Del	DEL	AGATTTGCTGAACCCTATTGGTGTT	AGATTTGCTGAACCCTATTGGTGTT	C			P-0012655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	228	384	0	ENST00000263967.3:c.1359_1383delinsC	p.Glu453_Val461delinsAsp	p.E453_V461delinsD	ENST00000263967	NM_006218.2	453	gaAGATTTGCTGAACCCTATTGGTGTT/gaC					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133263850	133263850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			402	118	276	0	ENST00000320574.5:c.52G>A	p.Glu18Lys	p.E18K	ENST00000320574	NM_006231.2	18	Gag/Aag					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65310483	65310483	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	125	316	0	ENST00000342505.4:c.2205C>G	p.Ile735Met	p.I735M	ENST00000342505	NM_002227.2	735	atC/atG					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8111433	8111434	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CA	CA	-			P-0014583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1070	416	325	0	ENST00000346208.3:c.922-3_922-2delCA		p.X308_splice	ENST00000346208		308						NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56482374	56482374	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	257	410	0	ENST00000267101.3:c.922G>C	p.Asp308His	p.D308H	ENST00000267101	NM_001982.3	308	Gac/Cac					NEWRECORD																																																																									
HOXB13	0	MSKCC	GRCh37	17	46805413	46805413	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	70	602	0	ENST00000290295.7:c.543G>C	p.Gln181His	p.Q181H	ENST00000290295	NM_006361.5	181	caG/caC					NEWRECORD																																																																									
BBC3	0	MSKCC	GRCh37	19	47725050	47725050	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014583-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	306	750	1	ENST00000449228.1:c.694del	p.Thr232ProfsTer58	p.T232Pfs*58	ENST00000449228	NM_001127240.2	232	Acc/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	375	491	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175328	112175348	+	stop_gained,inframe_deletion	Nonsense_Mutation	DEL	CAGCCAGGCACAAAGCTGTTG	CAGCCAGGCACAAAGCTGTTG	-			P-0011512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	186	262	0	ENST00000257430.4:c.4037_4057del	p.Ser1346_Glu1353delinsTer	p.S1346_E1353delins*	ENST00000257430	NM_000038.5	1346	tCAGCCAGGCACAAAGCTGTTGaa/taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	114	539	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	63	269	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	162	552	0	ENST00000322088.6:c.767C>A	p.Ser256Tyr	p.S256Y	ENST00000322088	NM_014225.5	256	tCc/tAc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100835	27100845	+	frameshift_variant	Frame_Shift_Del	DEL	ATGGATGGCAC	ATGGATGGCAC	-			P-0014788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	93	443	0	ENST00000324856.7:c.4119_4129del	p.Met1373IlefsTer68	p.M1373Ifs*68	ENST00000324856	NM_006015.4	1373	ATGGATGGCACa/a					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0014788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			558	115	534	0	ENST00000269305.4:c.97-1G>C		p.X33_splice	ENST00000269305	NM_001126112.2	33						NEWRECORD																																																																									
EPAS1	0	MSKCC	GRCh37	2	46609153	46609153	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			976	72	686	0	ENST00000263734.3:c.2212A>C	p.Lys738Gln	p.K738Q	ENST00000263734	NM_001430.4	738	Aaa/Caa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014788-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	154	395	0	ENST00000263967.3:c.3127A>C	p.Met1043Leu	p.M1043L	ENST00000263967	NM_006218.2	1043	Atg/Ctg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	90	620	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249029	55249029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	71	629	3	ENST00000275493.2:c.2327G>A	p.Arg776His	p.R776H	ENST00000275493	NM_005228.3	776	cGc/cAc					NEWRECORD																																																																									
NFKBIA	0	MSKCC	GRCh37	14	35873759	35873759	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012574-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	79	673	0	ENST00000216797.5:c.92A>G	p.Asp31Gly	p.D31G	ENST00000216797	NM_020529.2	31	gAc/gGc					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227662554	227662554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	105	530	0	ENST00000305123.5:c.901C>T	p.Arg301Cys	p.R301C	ENST00000305123	NM_005544.2	301	Cgc/Tgc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39932126	39932133	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGTTTG	TGGGTTTG	AGA			P-0013241-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	134	372	0	ENST00000378444.4:c.2466_2473delinsTCT	p.Lys823LeufsTer12	p.K823Lfs*12	ENST00000378444	NM_001123385.1	822	tcCAAACCCAgc/tcTCTgc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0004961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			611	153	490	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0004961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			666	161	559	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24176338	24176338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1214	30	682	3	ENST00000263121.7:c.1129C>T	p.Arg377Cys	p.R377C	ENST00000263121	NM_003073.3	377	Cgt/Tgt					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38967476	38967476	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0004961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			861	140	472	0	ENST00000357387.3:c.1114G>T	p.Glu372Ter	p.E372*	ENST00000357387	NM_152756.3	372	Gag/Tag					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65560444	65560449	+	inframe_deletion	In_Frame_Del	DEL	TGGGAC	TGGGAC	-			P-0004961-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			751	167	550	0	ENST00000358664.4:c.148_153del	p.Val50_Pro51del	p.V50_P51del	ENST00000358664	NM_002382.4	50	GTCCCA/-					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	81	502	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578500	7578500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	78	465	1	ENST00000269305.4:c.430C>T	p.Gln144Ter	p.Q144*	ENST00000269305	NM_001126112.2	144	Cag/Tag					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509106	106509106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010801-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	79	522	0	ENST00000359195.3:c.1100G>A	p.Gly367Asp	p.G367D	ENST00000359195	NM_002649.2	367	gGc/gAc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191570	10191570	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	69	586	0	ENST00000256474.2:c.563T>A	p.Leu188Gln	p.L188Q	ENST00000256474	NM_000551.3	188	cTg/cAg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11188164	11188164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	39	367	0	ENST00000361445.4:c.5930C>G	p.Thr1977Arg	p.T1977R	ENST00000361445	NM_004958.3	1977	aCa/aGa					NEWRECORD																																																																									
VTCN1	0	MSKCC	GRCh37	1	117699232	117699232	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	76	761	1	ENST00000369458.3:c.409G>T	p.Gly137Cys	p.G137C	ENST00000369458	NM_024626.3	137	Ggc/Tgc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169242	32169242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	67	569	0	ENST00000375023.3:c.3791A>G	p.His1264Arg	p.H1264R	ENST00000375023	NM_004557.3	1264	cAc/cGc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52668661	52668661	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	97	939	0	ENST00000394830.3:c.1258del	p.Tyr420IlefsTer18	p.Y420Ifs*18	ENST00000394830	NM_018313.4	420	Tat/at					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			134	586	436	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30729888	30729888	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			70	184	192	0	ENST00000359013.4:c.1484A>G	p.Tyr495Cys	p.Y495C	ENST00000359013	NM_001024847.2	495	tAt/tGt					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528486	157528486	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			364	202	442	0	ENST00000346085.5:c.6211G>T	p.Gly2071Ter	p.G2071*	ENST00000346085	NM_020732.3	2071	Gga/Tga					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161781193	161781193	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			538	316	788	0	ENST00000366898.1:c.1212A>T	p.Glu404Asp	p.E404D	ENST00000366898	NM_004562.2	404	gaA/gaT					NEWRECORD																																																																									
CDK6	0	MSKCC	GRCh37	7	92252400	92252400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			119	45	125	1	ENST00000265734.4:c.648G>T	p.Lys216Asn	p.K216N	ENST00000265734	NM_001259.6	216	aaG/aaT					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042322	42042322	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			430	686	1818	0	ENST00000219905.7:c.6517A>T	p.Arg2173Ter	p.R2173*	ENST00000219905	NM_001164273.1	2173	Aga/Tga					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411868	63411868	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	608	2170	1	ENST00000330258.3:c.1299C>A	p.His433Gln	p.H433Q	ENST00000330258	NM_152424.3	433	caC/caA					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765322	66765322	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			866	442	1509	3	ENST00000374690.3:c.334G>T	p.Glu112Ter	p.E112*	ENST00000374690	NM_000044.3	112	Gag/Tag					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100608300	100608300	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			511	334	849	0	ENST00000308731.7:c.1790C>T	p.Pro597Leu	p.P597L	ENST00000308731	NM_000061.2	597	cCa/cTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576913	7576943	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTGTTGGGCAGTGCTAGGAAAGAGGCAAGG	GTTGTTGGGCAGTGCTAGGAAAGAGGCAAGG	-			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			106	209	484	0	ENST00000269305.4:c.920-17_933del		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38944605	38944605	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			420	197	374	0	ENST00000357387.3:c.4856del	p.Leu1619Ter	p.L1619*	ENST00000357387	NM_152756.3	1619	tTa/ta					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212251665	212251665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			644	139	745	0	ENST00000342788.4:c.3394C>T	p.Pro1132Ser	p.P1132S	ENST00000342788	NM_005235.2	1132	Ccc/Tcc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173750	112173750	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			402	63	378	0	ENST00000257430.4:c.2459C>G	p.Thr820Ser	p.T820S	ENST00000257430	NM_000038.5	820	aCt/aGt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8317917	8317917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012192-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			447	89	518	1	ENST00000356435.5:c.5696C>A	p.Ala1899Asp	p.A1899D	ENST00000356435		1899	gCc/gAc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68835593	68835593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	48	545	2	ENST00000261769.5:c.184G>A	p.Gly62Ser	p.G62S	ENST00000261769	NM_004360.3	62	Ggt/Agt					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25470011	25470011	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	169	409	1	ENST00000264709.3:c.1031T>C	p.Leu344Pro	p.L344P	ENST00000264709	NM_175629.2	344	cTg/cCg					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56177878	56177878	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	1441	449	2	ENST00000399503.3:c.2851C>T	p.Gln951Ter	p.Q951*	ENST00000399503	NM_005921.1	951	Caa/Taa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47677805	47677805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010709-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1337	204	521	0	ENST00000347630.2:c.1060C>T	p.Arg354Cys	p.R354C	ENST00000347630	NM_001007230.1	354	Cgc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	81	342	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	107	348	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	267	456	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	22	162	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat					NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7217705	7217707	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-	rs757139280		P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	85	790	0	ENST00000380728.2:c.220_222del	p.Glu74del	p.E74del	ENST00000380728		74	GAG/-					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30061040	30061040	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	90	547	3	ENST00000338641.4:c.872G>A	p.Arg291His	p.R291H	ENST00000338641	NM_000268.3	291	cGt/cAt					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20159748	20159748	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	250	598	1	ENST00000379607.5:c.11A>T	p.Asn4Ile	p.N4I	ENST00000379607	NM_001412.3	4	aAt/aTt					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63409848	63409848	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	296	623	0	ENST00000330258.3:c.3319C>T	p.Leu1107Phe	p.L1107F	ENST00000330258	NM_152424.3	1107	Ctt/Ttt					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73345240	73345240	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	264	557	0	ENST00000377767.4:c.1649C>T	p.Ser550Phe	p.S550F	ENST00000377767	NM_014953.3	550	tCc/tTc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061148	38061212	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAG	CGCTCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAG	-			P-0013336-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	51	106	0	ENST00000250448.2:c.777_841del	p.Tyr259Ter	p.Y259*	ENST00000250448	NM_004496.3	259	taCTTGCGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGga/taga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174502	112174502	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	120	208	0	ENST00000257430.4:c.3211C>T	p.Gln1071Ter	p.Q1071*	ENST00000257430	NM_000038.5	1071	Caa/Taa					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	58	147	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971053	21971053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	58	147	0	ENST00000304494.5:c.305C>T	p.Ala102Val	p.A102V	ENST00000304494	NM_000077.4	102	gCg/gTg					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64573123	64573123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	42	155	0	ENST00000337652.1:c.1184C>T	p.Pro395Leu	p.P395L	ENST00000337652	NM_130803.2	395	cCg/cTg					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	475226	475226	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	105	292	0	ENST00000399788.2:c.411G>T	p.Lys137Asn	p.K137N	ENST00000399788	NM_001042603.1	137	aaG/aaT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577521	7577521	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	225	285	0	ENST00000269305.4:c.760A>T	p.Ile254Phe	p.I254F	ENST00000269305	NM_001126112.2	254	Atc/Ttc					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128750587	128750589	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0011347-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1333	86	288	0	ENST00000377970.2:c.130_132delGAG	p.Glu44del	p.E44del	ENST00000377970	NM_002467.4	42	GAG/-					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099972	27099972	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	333	711	0	ENST00000324856.7:c.3851C>T	p.Pro1284Leu	p.P1284L	ENST00000324856	NM_006015.4	1284	cCt/cTt					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36933685	36933685	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	490	965	1	ENST00000361632.4:c.1714C>T	p.Gln572Ter	p.Q572*	ENST00000361632		572	Cag/Tag					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204515949	204515954	+	inframe_deletion	In_Frame_Del	DEL	GACCTG	GACCTG	-			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	722	720	0	ENST00000367182.3:c.849_854del	p.Asp283_Leu284del	p.D283_L284del	ENST00000367182	NM_001278516.1	283	GACCTG/-					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204518560	204518560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			54	430	397	0	ENST00000367182.3:c.1223C>T	p.Ser408Leu	p.S408L	ENST00000367182	NM_001278516.1	408	tCa/tTa					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206666623	206666623	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	700	712	0	ENST00000367120.3:c.1957C>G	p.Leu653Val	p.L653V	ENST00000367120	NM_014002.3	653	Ctc/Gtc					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69462777	69462777	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4377	285	642	0	ENST00000227507.2:c.590C>T	p.Ser197Phe	p.S197F	ENST00000227507	NM_053056.2	197	tCc/tTc					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100933241	100933241	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			8906	524	1073	0	ENST00000325455.5:c.2149A>T	p.Ser717Cys	p.S717C	ENST00000325455	NM_001202474.3	717	Agt/Tgt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108175528	108175528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	419	552	0	ENST00000278616.4:c.5623C>T	p.Arg1875Ter	p.R1875*	ENST00000278616	NM_000051.3	1875	Cga/Tga					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49436024	49436024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	174	418	1	ENST00000301067.7:c.5957C>T	p.Thr1986Ile	p.T1986I	ENST00000301067	NM_003482.3	1986	aCc/aTc					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69230462	69230462	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	564	451	0	ENST00000462284.1:c.851T>C	p.Val284Ala	p.V284A	ENST00000462284	NM_002392.5	284	gTt/gCt					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29001353	29001353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			93	333	572	0	ENST00000282397.4:c.1379C>T	p.Pro460Leu	p.P460L	ENST00000282397	NM_002019.4	460	cCt/cTt					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36988433	36988433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	196	377	0	ENST00000354822.5:c.220G>A	p.Gly74Ser	p.G74S	ENST00000354822	NM_001079668.2	74	Ggc/Agc					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99251120	99251120	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	307	593	1	ENST00000268035.6:c.424A>G	p.Arg142Gly	p.R142G	ENST00000268035	NM_000875.3	142	Agg/Ggg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15942837	15942837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	475	846	1	ENST00000268712.3:c.6865C>T	p.Pro2289Ser	p.P2289S	ENST00000268712	NM_006311.3	2289	Cct/Tct					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29541468	29541468	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	89	130	0	ENST00000358273.4:c.1393-1G>A		p.X465_splice	ENST00000358273	NM_001042492.2	465						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29562641	29562641	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	543	712	1	ENST00000358273.4:c.3721C>T	p.Arg1241Ter	p.R1241*	ENST00000358273	NM_001042492.2	1241	Cga/Tga					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59761106	59761106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	394	657	1	ENST00000259008.2:c.3301C>T	p.Pro1101Ser	p.P1101S	ENST00000259008	NM_032043.2	1101	Cca/Tca					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39595510	39595510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	413	747	0	ENST00000262039.4:c.1396C>T	p.Pro466Ser	p.P466S	ENST00000262039	NM_002647.2	466	Cca/Tca					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10246446	10246446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	316	584	0	ENST00000340748.4:c.4691G>A	p.Arg1564Gln	p.R1564Q	ENST00000340748		1564	cGg/cAg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15272140	15272140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	95	213	0	ENST00000263388.2:c.6299C>T	p.Ser2100Leu	p.S2100L	ENST00000263388	NM_000435.2	2100	tCg/tTg					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15374256	15374256	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	320	653	0	ENST00000263377.2:c.1316T>G	p.Val439Gly	p.V439G	ENST00000263377	NM_058243.2	439	gTg/gGg					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41726666	41726666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	371	787	0	ENST00000301178.4:c.211C>T	p.Arg71Trp	p.R71W	ENST00000301178	NM_021913.4	71	Cgg/Tgg					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41763421	41763421	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	461	912	0	ENST00000301178.4:c.2220G>A	p.Trp740Ter	p.W740*	ENST00000301178	NM_021913.4	740	tgG/tgA					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29498088	29498088	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144453491		P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	309	562	2	ENST00000389048.3:c.1918G>A	p.Gly640Arg	p.G640R	ENST00000389048	NM_004304.4	640	Gga/Aga					NEWRECORD																																																																									
CTLA4	0	MSKCC	GRCh37	2	204736161	204736161	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	477	876	0	ENST00000302823.3:c.518G>C	p.Gly173Ala	p.G173A	ENST00000302823	NM_005214.4	173	gGg/gCg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790168	40790168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	132	266	0	ENST00000373198.4:c.2563G>A	p.Gly855Arg	p.G855R	ENST00000373198	NM_133170.3	855	Ggg/Agg					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39762920	39762920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	248	447	0	ENST00000288319.7:c.916C>T	p.Pro306Ser	p.P306S	ENST00000288319	NM_182918.3	306	Cca/Tca					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30664748	30664748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	228	369	0	ENST00000359013.4:c.152C>T	p.Ala51Val	p.A51V	ENST00000359013	NM_001024847.2	51	gCc/gTc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134825427	134825427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	372	622	1	ENST00000398015.3:c.943C>T	p.Pro315Ser	p.P315S	ENST00000398015	NM_004441.4	315	Cca/Tca					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41750581	41750581	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	266	513	0	ENST00000226382.2:c.47C>T	p.Ser16Phe	p.S16F	ENST00000226382	NM_003924.3	16	tCc/tTc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55981479	55981479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	429	683	0	ENST00000263923.4:c.458C>T	p.Ser153Phe	p.S153F	ENST00000263923	NM_002253.2	153	tCc/tTc					NEWRECORD																																																																									
FAM175A	0	MSKCC	GRCh37	4	84403381	84403381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	372	645	1	ENST00000321945.7:c.104G>A	p.Gly35Glu	p.G35E	ENST00000321945	NM_139076.2	35	gGg/gAg					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106190821	106190821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	411	631	0	ENST00000380013.4:c.4099C>T	p.Pro1367Ser	p.P1367S	ENST00000380013	NM_001127208.2	1367	Cca/Tca					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143045832	143045832	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	305	580	0	ENST00000262992.4:c.1802C>T	p.Ser601Phe	p.S601F	ENST00000262992	NM_001101669.1	601	tCc/tTc					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143067008	143067008	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	355	615	0	ENST00000262992.4:c.1705C>T	p.Pro569Ser	p.P569S	ENST00000262992	NM_001101669.1	569	Ccc/Tcc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187540074	187540074	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	385	657	2	ENST00000441802.2:c.7666C>T	p.Arg2556Ter	p.R2556*	ENST00000441802	NM_005245.3	2556	Cga/Tga					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294102	1294102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	332	585	1	ENST00000310581.5:c.899G>A	p.Gly300Asp	p.G300D	ENST00000310581	NM_198253.2	300	gGc/gAc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	205	483	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180046682	180046682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	315	604	0	ENST00000261937.6:c.2630C>T	p.Ala877Val	p.A877V	ENST00000261937	NM_182925.4	877	gCc/gTc					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	398890	398890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	345	656	0	ENST00000380956.4:c.700C>T	p.Pro234Ser	p.P234S	ENST00000380956	NM_001195286.1	234	Ccc/Tcc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117650535	117650535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	676	1175	0	ENST00000368508.3:c.5323G>A	p.Glu1775Lys	p.E1775K	ENST00000368508	NM_002944.2	1775	Gaa/Aaa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117662562	117662562	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	281	564	1	ENST00000368508.3:c.4902+1G>A		p.X1634_splice	ENST00000368508	NM_002944.2	1634						NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2959079	2959079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	298	579	0	ENST00000396946.4:c.2437G>A	p.Glu813Lys	p.E813K	ENST00000396946	NM_032415.4	813	Gag/Aag					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50450274	50450274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	289	660	2	ENST00000331340.3:c.458C>T	p.Ser153Leu	p.S153L	ENST00000331340	NM_006060.4	153	tCa/tTa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55220337	55220337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	220	451	0	ENST00000275493.2:c.727C>T	p.Pro243Ser	p.P243S	ENST00000275493	NM_005228.3	243	Ccc/Tcc					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81381514	81381514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	513	913	0	ENST00000222390.5:c.547G>A	p.Glu183Lys	p.E183K	ENST00000222390	NM_000601.4	183	Gaa/Aaa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116340210	116340210	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	358	594	0	ENST00000397752.3:c.1072G>A	p.Asp358Asn	p.D358N	ENST00000397752	NM_000245.2	358	Gat/Aat					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8389285	8389285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	456	847	0	ENST00000356435.5:c.4333G>A	p.Glu1445Lys	p.E1445K	ENST00000356435		1445	Gaa/Aaa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117642514	117642516	+	missense_variant	Missense_Mutation	ONP	CCC	CCC	TTT			P-0013383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	373	1158	0	ENST00000368508.3:c.5683_5685delinsAAA	p.Gly1895Lys	p.G1895K	ENST00000368508	NM_002944.2	1895	GGG/AAA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	29	440	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	141	484	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	11	299	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604650	48604650	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	15	287	0	ENST00000342988.3:c.1472G>T	p.Gly491Val	p.G491V	ENST00000342988	NM_005359.5	491	gGt/gTt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16264024	16264024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1314	410	717	0	ENST00000375759.3:c.10393C>T	p.Pro3465Ser	p.P3465S	ENST00000375759	NM_015001.2	3465	Ccc/Tcc					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17742874	17742879	+	protein_altering_variant	In_Frame_Del	DEL	CCGAGA	CCGAGA	AGG			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			754	118	585	1	ENST00000250003.3:c.782_787delinsAGG	p.Thr261_Ser263delinsLysGly	p.T261_S263delinsKG	ENST00000250003	NM_002478.4	261	aCCGAGAgc/aAGGgc					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865508	57865508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	43	506	1	ENST00000228682.2:c.2985G>T	p.Leu995Phe	p.L995F	ENST00000228682	NM_005269.2	995	ttG/ttT					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4099221	4099221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	76	450	0	ENST00000262948.5:c.897G>C	p.Arg299Ser	p.R299S	ENST00000262948	NM_030662.3	299	agG/agC					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227661440	227661440	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			513	75	396	0	ENST00000305123.5:c.2015C>G	p.Ser672Cys	p.S672C	ENST00000305123	NM_005544.2	672	tCt/tGt					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110249315	110249315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014502-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	170	760	0	ENST00000374672.4:c.1258C>T	p.His420Tyr	p.H420Y	ENST00000374672	NM_004235.4	420	Cac/Tac					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	69	325	0	ENST00000397062.3:c.101G>C	p.Arg34Pro	p.R34P	ENST00000397062	NM_006164.4	34	cGa/cCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	84	335	0	ENST00000269305.4:c.577C>A	p.His193Asn	p.H193N	ENST00000269305	NM_001126112.2	193	Cat/Aat					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45655425	45655425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	39	273	0	ENST00000407780.3:c.427G>A	p.Val143Ile	p.V143I	ENST00000407780	NM_001283052.1	143	Gtc/Atc					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46726541	46726541	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	56	357	0	ENST00000371975.4:c.620G>C	p.Cys207Ser	p.C207S	ENST00000371975	NM_003579.3	207	tGc/tCc					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26032039	26032039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	161	661	0	ENST00000244661.2:c.250C>T	p.Arg84Cys	p.R84C	ENST00000244661	NM_003537.3	84	Cgc/Tgc					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137519721	137519721	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	54	297	0	ENST00000367739.4:c.917C>T	p.Ser306Leu	p.S306L	ENST00000367739	NM_000416.2	306	tCa/tTa					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39728714	39728714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	110	277	0	ENST00000361337.2:c.994G>A	p.Glu332Lys	p.E332K	ENST00000361337	NM_003286.2	332	Gaa/Aaa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41566522	41566524	+	missense_variant	Missense_Mutation	ONP	TAC	TAC	AAA			P-0010503-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	109	482	1	ENST00000263253.7:c.4399_4401delinsAAA	p.Tyr1467Lys	p.Y1467K	ENST00000263253	NM_001429.3	1467	TAC/AAA					NEWRECORD																																																																									
SRSF2	0	MSKCC	GRCh37	17	74732413	74732413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1456	557	873	2	ENST00000359995.5:c.496G>T	p.Ala166Ser	p.A166S	ENST00000359995	NM_001195427.1	166	Gca/Tca					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101273	27101273	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	328	549	1	ENST00000324856.7:c.4555C>T	p.Gln1519Ter	p.Q1519*	ENST00000324856	NM_006015.4	1519	Cag/Tag					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78425921	78425921	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	254	431	0	ENST00000370768.2:c.1524G>T	p.Gln508His	p.Q508H	ENST00000370768	NM_003902.3	508	caG/caT					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16082605	16082605	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	38	147	0	ENST00000281043.3:c.419C>T	p.Pro140Leu	p.P140L	ENST00000281043	NM_005378.4	140	cCg/cTg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29430086	29430086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	698	589	1	ENST00000389048.3:c.3889C>A	p.Pro1297Thr	p.P1297T	ENST00000389048	NM_004304.4	1297	Ccc/Acc					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158622675	158622675	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1455	270	962	0	ENST00000263640.3:c.824C>A	p.Ser275Tyr	p.S275Y	ENST00000263640	NM_001105.4	275	tCc/tAc					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138452236	138452236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	502	622	1	ENST00000289153.2:c.1017G>T	p.Lys339Asn	p.K339N	ENST00000289153	NM_006219.2	339	aaG/aaT					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142241674	142241674	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	342	415	0	ENST00000350721.4:c.4162G>T	p.Glu1388Ter	p.E1388*	ENST00000350721	NM_001184.3	1388	Gaa/Taa					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153332473	153332473	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	409	626	0	ENST00000281708.4:c.483C>G	p.Phe161Leu	p.F161L	ENST00000281708	NM_033632.3	161	ttC/ttG					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176692	112176692	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	405	571	0	ENST00000257430.4:c.5401G>T	p.Ala1801Ser	p.A1801S	ENST00000257430	NM_000038.5	1801	Gct/Tct					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169961	32169961	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	413	652	0	ENST00000375023.3:c.3647C>A	p.Ser1216Tyr	p.S1216Y	ENST00000375023	NM_004557.3	1216	tCc/tAc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157527658	157527658	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	242	394	0	ENST00000346085.5:c.5383A>T	p.Asn1795Tyr	p.N1795Y	ENST00000346085	NM_020732.3	1795	Aac/Tac					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81392117	81392117	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1600	742	842	0	ENST00000222390.5:c.160G>T	p.Asp54Tyr	p.D54Y	ENST00000222390	NM_000601.4	54	Gat/Tat					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509120	106509120	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	298	501	0	ENST00000359195.3:c.1114G>T	p.Val372Phe	p.V372F	ENST00000359195	NM_002649.2	372	Gtc/Ttc					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5089846	5089846	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	304	537	0	ENST00000381652.3:c.2744G>T	p.Gly915Val	p.G915V	ENST00000381652	NM_004972.3	915	gGa/gTa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8331652	8331652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	246	760	1	ENST00000356435.5:c.5464G>T	p.Asp1822Tyr	p.D1822Y	ENST00000356435		1822	Gac/Tac					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8733781	8733781	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	182	592	0	ENST00000356435.5:c.63G>T	p.Glu21Asp	p.E21D	ENST00000356435		21	gaG/gaT					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119169081	119169081	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	304	444	2	ENST00000264033.4:c.2265G>T	p.Leu755Phe	p.L755F	ENST00000264033	NM_005188.3	755	ttG/ttT					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26911723	26911723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	397	598	2	ENST00000381527.3:c.148G>T	p.Ala50Ser	p.A50S	ENST00000381527	NM_001260.1	50	Gct/Tct					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88476299	88476299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	299	567	0	ENST00000360948.2:c.1833C>A	p.Asp611Glu	p.D611E	ENST00000360948	NM_001012338.2	611	gaC/gaA					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88576183	88576183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			138	358	390	1	ENST00000360948.2:c.1490G>T	p.Gly497Val	p.G497V	ENST00000360948	NM_001012338.2	497	gGg/gTg					NEWRECORD																																																																									
RAD51D	0	MSKCC	GRCh37	17	33433445	33433445	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	285	481	0	ENST00000335858.7:c.200T>C	p.Leu67Pro	p.L67P	ENST00000335858	NM_133629.2	67	cTg/cCg					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554428	63554428	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	389	496	0	ENST00000307078.5:c.311G>T	p.Cys104Phe	p.C104F	ENST00000307078	NM_004655.3	104	tGc/tTc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31375182	31375182	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			914	75	539	0	ENST00000328111.2:c.579G>C	p.Gln193His	p.Q193H	ENST00000328111	NM_006892.3	193	caG/caC					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044926	47044926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	471	295	0	ENST00000329236.7:c.2018A>G	p.Glu673Gly	p.E673G	ENST00000329236	NM_001204466.1	673	gAg/gGg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692896	89692896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014976-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			289	198	521	0	ENST00000371953.3:c.380G>A	p.Gly127Glu	p.G127E	ENST00000371953	NM_000314.4	127	gGa/gAa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	75	589	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			671	142	693	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56436140	56436140	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	121	752	0	ENST00000407977.2:c.997del	p.Gln333LysfsTer86	p.Q333Kfs*86	ENST00000407977		333	Caa/aa					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589552	67589552	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014690-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	28	278	0	ENST00000274335.5:c.1315G>T	p.Glu439Ter	p.E439*	ENST00000274335		439	Gaa/Taa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0006819-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			821	514	780	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006819-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			527	274	477	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57861838	57861838	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006819-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1704	584	1137	2	ENST00000228682.2:c.1139G>A	p.Arg380Gln	p.R380Q	ENST00000228682	NM_005269.2	380	cGa/cAa					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128852264	128852264	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006819-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			732	250	550	0	ENST00000249373.3:c.2336A>T	p.Glu779Val	p.E779V	ENST00000249373	NM_005631.4	779	gAa/gTa					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114710706	114710706	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0006819-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			963	355	803	1	ENST00000543371.1:c.189+2T>C		p.X63_splice	ENST00000543371	NM_001198531.1	63						NEWRECORD																																																																									
DNAJB1	0	MSKCC	GRCh37	19	14629021	14629021	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0006819-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			932	211	817	0	ENST00000254322.2:c.141G>C	p.Glu47Asp	p.E47D	ENST00000254322	NM_006145.1	47	gaG/gaC					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48586235	48586235	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006819-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			447	228	447	1	ENST00000342988.3:c.905-1G>A		p.X302_splice	ENST00000342988	NM_005359.5	302						NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858007	9858007	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006819-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	218	726	1	ENST00000330684.3:c.3394C>A	p.Pro1132Thr	p.P1132T	ENST00000330684	NM_001134407.1	1132	Cca/Aca					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66230734	66230734	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0006819-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			568	71	441	0	ENST00000273854.3:c.2236+1del		p.X746_splice	ENST00000273854	NM_004439.5	746						NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72832438	72832438	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015060-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	119	288	1	ENST00000268489.5:c.4143del	p.Phe1381LeufsTer44	p.F1381Lfs*44	ENST00000268489	NM_006885.3	1381	ttT/tt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	562	577	2	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33286851	33286858	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTCACC	TGGTCACC	A			P-0011112-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	319	343	0	ENST00000374542.5:c.2079_2086delinsT	p.Val694AlafsTer70	p.V694Afs*70	ENST00000374542	NM_001141970.1	693	ctGGTGACCAgc/ctTgc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	545	442	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	286	419	0	ENST00000269305.4:c.713G>A	p.Cys238Tyr	p.C238Y	ENST00000269305	NM_001126112.2	238	tGt/tAt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	256	383	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955432	48955432	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	325	262	0	ENST00000267163.4:c.1548G>A	p.Trp516Ter	p.W516*	ENST00000267163	NM_000321.2	516	tgG/tgA					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	175996758	175996758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	371	615	0	ENST00000367669.3:c.1679G>T	p.Cys560Phe	p.C560F	ENST00000367669	NM_022457.5	560	tGt/tTt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108155201	108155201	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs200196781		P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	234	386	1	ENST00000278616.4:c.3993+1G>A		p.X1331_splice	ENST00000278616	NM_000051.3	1331						NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435452	56435452	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	288	416	0	ENST00000407977.2:c.1685del	p.Phe562SerfsTer138	p.F562Sfs*138	ENST00000407977		562	tTc/tc					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97873805	97873807	+	inframe_deletion	In_Frame_Del	DEL	CAG	CAG	-			P-0012041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	292	517	0	ENST00000289081.3:c.1267_1269del	p.Leu423del	p.L423del	ENST00000289081	NM_000136.2	423	CTG/-					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29519913	29519913	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	142	232	0	ENST00000389048.3:c.1658C>T	p.Ser553Phe	p.S553F	ENST00000389048	NM_004304.4	553	tCc/tTc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0011594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	149	217	2				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	121	189	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149459852	149459852	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	135	149	0	ENST00000286301.3:c.355G>A	p.Glu119Lys	p.E119K	ENST00000286301	NM_005211.3	119	Gag/Aag					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33289139	33289139	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	79	243	0	ENST00000374542.5:c.413C>T	p.Ser138Leu	p.S138L	ENST00000374542	NM_001141970.1	138	tCa/tTa					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729961	41729961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	458	446	0	ENST00000242208.4:c.568G>A	p.Glu190Lys	p.E190K	ENST00000242208	NM_002192.2	190	Gaa/Aaa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50444413	50444413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	120	154	0	ENST00000331340.3:c.343G>A	p.Gly115Arg	p.G115R	ENST00000331340	NM_006060.4	115	Gga/Aga					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0011594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	404	212	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108160350	108160350	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1800058		P-0011594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			257	71	105	0	ENST00000278616.4:c.4258C>T	p.Leu1420Phe	p.L1420F	ENST00000278616	NM_000051.3	1420	Ctt/Ttt					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57861149	57861149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	171	397	0	ENST00000228682.2:c.946G>A	p.Glu316Lys	p.E316K	ENST00000228682	NM_005269.2	316	Gaa/Aaa					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9520192	9520192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	182	307	0	ENST00000353224.5:c.2077G>A	p.Glu693Lys	p.E693K	ENST00000353224	NM_177990.2	693	Gaa/Aaa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40747086	40747086	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	165	262	0	ENST00000373198.4:c.2996C>T	p.Ser999Phe	p.S999F	ENST00000373198	NM_133170.3	999	tCc/tTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41408878	41408878	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011594-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	177	272	0	ENST00000373198.4:c.548G>C	p.Arg183Pro	p.R183P	ENST00000373198	NM_133170.3	183	cGg/cCg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	229	311	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48586237	48586237	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0010303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	238	408	0	ENST00000342988.3:c.906G>A	p.Trp302Ter	p.W302*	ENST00000342988	NM_005359.5	302	tgG/tgA					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139410439	139410439	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010303-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	163	447	0	ENST00000277541.6:c.1663A>G	p.Thr555Ala	p.T555A	ENST00000277541	NM_017617.3	555	Acg/Gcg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	65	808	2	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69631132	69631132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	160	653	4	ENST00000334134.2:c.280G>A	p.Gly94Arg	p.G94R	ENST00000334134	NM_005247.2	94	Ggg/Agg					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30311685	30311685	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010048-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	100	545	1	ENST00000262643.3:c.539A>T	p.Gln180Leu	p.Q180L	ENST00000262643	NM_001238.2	180	cAa/cTa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163305	32163305	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	48	857	0	ENST00000375023.3:c.5921C>G	p.Pro1974Arg	p.P1974R	ENST00000375023	NM_004557.3	1974	cCg/cGg					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87635230	87635230	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	36	477	0	ENST00000277120.3:c.2282A>G	p.Glu761Gly	p.E761G	ENST00000277120		761	gAg/gGg					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435733	110435733	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012276-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	11	222	0	ENST00000375856.3:c.2668C>A	p.Pro890Thr	p.P890T	ENST00000375856	NM_003749.2	890	Ccc/Acc					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	299	432	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	41	145	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
KMT2D	8085	MSKCC	GRCh37	12	49434492	49434492	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	262	474	2	ENST00000301067.7:c.7061del	p.Pro2354LeufsTer30	p.P2354Lfs*30	ENST00000301067	NM_003482.3	2354	cCt/ct					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3789591	3789591	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	318	555	0	ENST00000262367.5:c.4268delC	p.Pro1423LeufsTer36	p.P1423Lfs*36	ENST00000262367	NM_004380.2	1423	cCt/ct					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70118918	70118918	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	422	730	0	ENST00000245479.2:c.490C>T	p.Gln164Ter	p.Q164*	ENST00000245479	NM_000346.3	164	Cag/Tag					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36987078	36987078	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	67	391	0	ENST00000354822.5:c.611A>G	p.Tyr204Cys	p.Y204C	ENST00000354822	NM_001079668.2	204	tAc/tGc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	168	489	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591106	67591106	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	179	371	0	ENST00000274335.5:c.1699A>G	p.Lys567Glu	p.K567E	ENST00000274335		567	Aaa/Gaa					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71101751	71101751	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	236	463	0	ENST00000318789.4:c.447del	p.Lys149AsnfsTer57	p.K149Nfs*57	ENST00000318789	NM_032682.5	149	aaA/aa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116371755	116371755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	230	493	1	ENST00000397752.3:c.1234C>T	p.Arg412Cys	p.R412C	ENST00000397752	NM_000245.2	412	Cgc/Tgc					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9770521	9770521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	351	651	1	ENST00000377346.4:c.8C>A	p.Pro3His	p.P3H	ENST00000377346	NM_005026.3	3	cCt/cAt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099836	27099881	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GCTCCAGGGAGTGATCCCTTCATGTCCTCAGGGCAGGGCCCCAACG	GCTCCAGGGAGTGATCCCTTCATGTCCTCAGGGCAGGGCCCCAACG	-			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	265	397	0	ENST00000324856.7:c.3717_3762del		p.X1239_splice	ENST00000324856	NM_006015.4	1239						NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226552728	226552728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	380	557	0	ENST00000366794.5:c.2633G>A	p.Arg878Gln	p.R878Q	ENST00000366794	NM_001618.3	878	cGg/cAg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100466	8100466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	501	807	0	ENST00000346208.3:c.440G>A	p.Ser147Asn	p.S147N	ENST00000346208		147	aGc/aAc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711900	89711904	+	frameshift_variant	Frame_Shift_Del	DEL	GCTAT	GCTAT	-			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	154	428	0	ENST00000371953.3:c.519_523del	p.Tyr174ValfsTer4	p.Y174Vfs*4	ENST00000371953	NM_000314.4	173	cGCTAT/c					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32456744	32456744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	164	263	0	ENST00000332351.3:c.148G>A	p.Ala50Thr	p.A50T	ENST00000332351	NM_024426.4	50	Gct/Act					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69466040	69466040	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	287	509	0	ENST00000227507.2:c.878T>G	p.Val293Gly	p.V293G	ENST00000227507	NM_053056.2	293	gTg/gGg					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103528056	103528056	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	180	316	1	ENST00000355739.4:c.3364C>T	p.Pro1122Ser	p.P1122S	ENST00000355739	NM_000123.3	1122	Cca/Tca					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828818	72828818	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	618	1138	0	ENST00000268489.5:c.7763del	p.Leu2588ArgfsTer24	p.L2588Rfs*24	ENST00000268489	NM_006885.3	2588	cTg/cg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72831849	72831849	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1339	657	1208	1	ENST00000268489.5:c.4732C>T	p.Gln1578Ter	p.Q1578*	ENST00000268489	NM_006885.3	1578	Caa/Taa					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78617542	78617542	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	243	439	0	ENST00000306801.3:c.280G>T	p.Gly94Cys	p.G94C	ENST00000306801	NM_020761.2	94	Ggt/Tgt					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42792043	42792043	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	311	625	0	ENST00000575354.2:c.849del	p.Thr284ArgfsTer41	p.T284Rfs*41	ENST00000575354	NM_015125.3	283	Ccc/cc					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52714571	52714571	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	378	679	0	ENST00000322088.6:c.329A>G	p.Glu110Gly	p.E110G	ENST00000322088	NM_014225.5	110	gAg/gGg					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25463187	25463187	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	420	691	0	ENST00000264709.3:c.2306T>C	p.Ile769Thr	p.I769T	ENST00000264709	NM_175629.2	769	aTc/aCc					NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48025857	48025857	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1472949451		P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	299	594	0	ENST00000234420.5:c.741del	p.Lys247AsnfsTer32	p.K247Nfs*32	ENST00000234420	NM_000179.2	245	atA/at					NEWRECORD																																																																									
BCL2L11	0	MSKCC	GRCh37	2	111881594	111881594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	328	583	2	ENST00000393256.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000393256	NM_006538.4	91	cGa/cAa					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022391	31022391	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	181	350	0	ENST00000375687.4:c.1879del	p.Ala627ArgfsTer76	p.A627Rfs*76	ENST00000375687	NM_015338.5	626	Ggg/gg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41523737	41523737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	315	578	1	ENST00000263253.7:c.1153G>T	p.Gly385Cys	p.G385C	ENST00000263253	NM_001429.3	385	Ggc/Tgc					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71026804	71026811	+	frameshift_variant	Frame_Shift_Del	DEL	AAAGATGC	AAAGATGC	-			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	107	451	0	ENST00000318789.4:c.1411_1418del	p.Ala471AsnfsTer2	p.A471Nfs*2	ENST00000318789	NM_032682.5	471	GCATCTTTa/a					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71027182	71027182	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	172	334	0	ENST00000318789.4:c.1147-2A>T		p.X383_splice	ENST00000318789	NM_032682.5	383						NEWRECORD																																																																									
HIST1H3E	0	MSKCC	GRCh37	6	26225657	26225657	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202067024		P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	726	1511	1	ENST00000360408.1:c.275C>T	p.Ala92Val	p.A92V	ENST00000360408	NM_003532.2	92	gCg/gTg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32184823	32184823	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148631044		P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	223	441	0	ENST00000375023.3:c.1760A>G	p.Gln587Arg	p.Q587R	ENST00000375023	NM_004557.3	587	cAa/cGa					NEWRECORD																																																																									
PIM1	0	MSKCC	GRCh37	6	37141816	37141816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	315	542	0	ENST00000373509.5:c.891G>T	p.Gln297His	p.Q297H	ENST00000373509	NM_002648.3	297	caG/caT					NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139820134	139820134	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0014145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	449	771	0	ENST00000247668.2:c.1288-1G>T		p.X430_splice	ENST00000247668	NM_021138.3	430						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	37	559	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0010844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	58	495	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	46	279	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6036984	6036984	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	92	368	0	ENST00000265849.7:c.776G>A	p.Cys259Tyr	p.C259Y	ENST00000265849	NM_000535.5	259	tGt/tAt					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32456675	32456675	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	16	131	0	ENST00000332351.3:c.217G>T	p.Val73Leu	p.V73L	ENST00000332351	NM_024426.4	73	Gtg/Ttg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108098600	108098600	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	32	148	0	ENST00000278616.4:c.170G>T	p.Trp57Leu	p.W57L	ENST00000278616	NM_000051.3	57	tGg/tTg					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66523985	66523985	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011547-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	33	233	0	ENST00000358598.2:c.713G>C	p.Ser238Thr	p.S238T	ENST00000358598	NM_212471.2	238	aGc/aCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577520	7577520	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	178	531	0	ENST00000269305.4:c.761T>G	p.Ile254Ser	p.I254S	ENST00000269305	NM_001126112.2	254	aTc/aGc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88483916	88483916	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	122	691	0	ENST00000360948.2:c.1654G>T	p.Val552Phe	p.V552F	ENST00000360948	NM_001012338.2	552	Gtc/Ttc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3843410	3843410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	95	358	0	ENST00000262367.5:c.1193G>A	p.Cys398Tyr	p.C398Y	ENST00000262367	NM_004380.2	398	tGt/tAt					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	341	494	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95557642	95557642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	379	614	0	ENST00000343455.3:c.5425G>A	p.Gly1809Arg	p.G1809R	ENST00000343455	NM_177438.2	1809	Ggg/Agg					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143191860	143191860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	524	651	0	ENST00000262992.4:c.571G>A	p.Asp191Asn	p.D191N	ENST00000262992	NM_001101669.1	191	Gat/Aat					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32183045	32183045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	312	582	1	ENST00000375023.3:c.1979C>A	p.Pro660Gln	p.P660Q	ENST00000375023	NM_004557.3	660	cCa/cAa					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138199972	138199972	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	163	275	0	ENST00000237289.4:c.1390G>T	p.Ala464Ser	p.A464S	ENST00000237289	NM_001270507.1	464	Gca/Tca					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77054864	77054864	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	446	647	0	ENST00000356341.3:c.998G>T	p.Ser333Ile	p.S333I	ENST00000356341	NM_002576.4	333	aGt/aTt					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95557642	95557642	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	364	614	0	ENST00000343455.3:c.5425G>T	p.Gly1809Trp	p.G1809W	ENST00000343455	NM_177438.2	1809	Ggg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577129	7577129	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	283	544	0	ENST00000269305.4:c.809T>G	p.Phe270Cys	p.F270C	ENST00000269305	NM_001126112.2	270	tTt/tGt					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25464570	25464570	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	316	360	0	ENST00000264709.3:c.1943T>C	p.Leu648Pro	p.L648P	ENST00000264709	NM_175629.2	648	cTg/cCg					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	236675	236675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1472	65	218	0	ENST00000264932.6:c.1393C>T	p.Arg465Trp	p.R465W	ENST00000264932	NM_004168.2	465	Cgg/Tgg					NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139814731	139814731	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	139	553	0	ENST00000247668.2:c.724G>C	p.Glu242Gln	p.E242Q	ENST00000247668	NM_021138.3	242	Gag/Cag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9923312	9923312	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1062	109	458	0	ENST00000330684.3:c.1975G>C	p.Val659Leu	p.V659L	ENST00000330684	NM_001134407.1	659	Gtg/Ctg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266711	198266711	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012102-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			631	312	467	0	ENST00000335508.6:c.2221A>G	p.Lys741Glu	p.K741E	ENST00000335508	NM_012433.2	741	Aag/Gag					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188204	10188204	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012102-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			253	244	492	1	ENST00000256474.2:c.349delT	p.Trp117GlyfsTer42	p.W117Gfs*42	ENST00000256474	NM_000551.3	116	cTt/ct					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52598079	52598079	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012102-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			328	249	702	0	ENST00000394830.3:c.3787del	p.Ile1263PhefsTer25	p.I1263Ffs*25	ENST00000394830	NM_018313.4	1263	Att/tt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	307	298	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	49	133	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37880261	37880261	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0011261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	131	401	0	ENST00000269571.5:c.2305G>T	p.Asp769Tyr	p.D769Y	ENST00000269571		769	Gac/Tac					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56180646	56180646	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	74	229	0	ENST00000399503.3:c.3975G>A	p.Trp1325Ter	p.W1325*	ENST00000399503	NM_005921.1	1325	tgG/tgA					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151845620	151845620	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011261-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	209	276	0	ENST00000262189.6:c.13392del	p.Cys4465ValfsTer52	p.C4465Vfs*52	ENST00000262189	NM_170606.2	4464	ttC/tt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0012868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	58	517	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49413009	49413009	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552758		P-0012868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	72	646	0	ENST00000418115.1:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000418115	NM_001664.2	5	cGg/cAg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246293	46246293	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	72	519	0	ENST00000334344.6:c.4387C>T	p.Gln1463Ter	p.Q1463*	ENST00000334344	NM_152641.2	1463	Caa/Taa					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39537555	39537555	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	89	539	0	ENST00000262039.4:c.89G>A	p.Arg30Lys	p.R30K	ENST00000262039	NM_002647.2	30	aGa/aAa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	597	696	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578189	7578189	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	465	781	0	ENST00000269305.4:c.660T>A	p.Tyr220Ter	p.Y220*	ENST00000269305	NM_001126112.2	220	taT/taA					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175184	112175194	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCTAATACC	CTGCTAATACC	-			P-0013583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	167	197	0	ENST00000257430.4:c.3897_3907del	p.Thr1301SerfsTer10	p.T1301Sfs*10	ENST00000257430	NM_000038.5	1298	tCTGCTAATACC/t					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173627	112173627	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	113	427	0	ENST00000257430.4:c.2336T>A	p.Leu779Ter	p.L779*	ENST00000257430	NM_000038.5	779	tTa/tAa					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176523357	176523357	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0013583-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	124	690	1	ENST00000292408.4:c.2014G>T	p.Val672Leu	p.V672L	ENST00000292408	NM_213647.1	672	Gtg/Ttg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0012160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	426	613	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	427428	427428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	427	482	1	ENST00000399788.2:c.2741C>T	p.Pro914Leu	p.P914L	ENST00000399788	NM_001042603.1	914	cCg/cTg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2098674	2098689	+	frameshift_variant	Frame_Shift_Del	DEL	GGACTGGGAACACCGA	GGACTGGGAACACCGA	TTCTG			P-0013655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	328	578	2	ENST00000219476.3:c.58_73delinsTTCTG	p.Gly20PhefsTer11	p.G20Ffs*11	ENST00000219476	NM_000548.3	20	GGACTGGGAACACCGAgg/TTCTGgg					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153268150	153268150	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	238	477	1	ENST00000281708.4:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000281708	NM_033632.3	220	Caa/Taa					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131940533	131940533	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	366	511	0	ENST00000265335.6:c.2560C>G	p.Gln854Glu	p.Q854E	ENST00000265335		854	Cag/Gag					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176638680	176638680	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	158	438	0	ENST00000439151.2:c.3280A>G	p.Met1094Val	p.M1094V	ENST00000439151	NM_022455.4	1094	Atg/Gtg					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729819	41729819	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013655-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	302	630	0	ENST00000242208.4:c.710C>A	p.Ser237Tyr	p.S237Y	ENST00000242208	NM_002192.2	237	tCc/tAc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	68	465	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011180-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	117	436	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			315	47	638	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			251	57	676	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70361160	70361160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	29	415	0	ENST00000374080.3:c.6348C>A	p.His2116Gln	p.H2116Q	ENST00000374080		2116	caC/caA					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39764328	39764328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014635-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	41	778	1	ENST00000288319.7:c.784G>A	p.Gly262Ser	p.G262S	ENST00000288319	NM_182918.3	262	Ggt/Agt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0012070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	141	812	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604790	48604790	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012070-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	136	461	0	ENST00000342988.3:c.1612G>T	p.Glu538Ter	p.E538*	ENST00000342988	NM_005359.5	538	Gaa/Taa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	124	541	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579377	7579377	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	140	480	0	ENST00000269305.4:c.310C>T	p.Gln104Ter	p.Q104*	ENST00000269305	NM_001126112.2	104	Cag/Tag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0010138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	38	444	2	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0010138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	34	334	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	15	179	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89653815	89653815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	19	504	1	ENST00000371953.3:c.113C>T	p.Pro38Leu	p.P38L	ENST00000371953	NM_000314.4	38	cCt/cTt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183755	10183757	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0010517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	33	270	0	ENST00000256474.2:c.227_229delTCT	p.Phe76del	p.F76del	ENST00000256474	NM_000551.3	75	aTCTtc/atc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47155395	47155395	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	55	585	1	ENST00000409792.3:c.4686G>A	p.Trp1562Ter	p.W1562*	ENST00000409792	NM_014159.6	1562	tgG/tgA					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	412	607	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	475	558	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579536	7579536	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	203	554	1	ENST00000269305.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000269305	NM_001126112.2	51	Gaa/Taa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591889	48591889	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	227	790	0	ENST00000342988.3:c.1052A>T	p.Asp351Val	p.D351V	ENST00000342988	NM_005359.5	351	gAt/gTt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46254668	46254668	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	228	607	0	ENST00000334344.6:c.4858C>T	p.Gln1620Ter	p.Q1620*	ENST00000334344	NM_152641.2	1620	Cag/Tag					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440360	52440360	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	171	399	0	ENST00000460680.1:c.692T>A	p.Met231Lys	p.M231K	ENST00000460680	NM_004656.3	231	aTg/aAg					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95562266	95562266	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	114	639	2	ENST00000343455.3:c.4991C>T	p.Ser1664Leu	p.S1664L	ENST00000343455	NM_177438.2	1664	tCg/tTg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5220149	5220149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	111	307	0	ENST00000357368.4:c.3566C>T	p.Ser1189Leu	p.S1189L	ENST00000357368	NM_002850.3	1189	tCa/tTa					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56491645	56491645	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	408	614	3	ENST00000267101.3:c.2537G>T	p.Ser846Ile	p.S846I	ENST00000267101	NM_001982.3	846	aGt/aTt					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158622607	158622607	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	562	993	0	ENST00000263640.3:c.892A>T	p.Thr298Ser	p.T298S	ENST00000263640	NM_001105.4	298	Act/Tct					NEWRECORD																																																																									
DNAJB1	0	MSKCC	GRCh37	19	14627361	14627361	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	162	1063	1	ENST00000254322.2:c.709T>A	p.Phe237Ile	p.F237I	ENST00000254322	NM_006145.1	237	Ttt/Att					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76954069	76954069	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010934-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	363	976	1	ENST00000373344.5:c.182A>T	p.Lys61Met	p.K61M	ENST00000373344	NM_000489.3	61	aAg/aTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	754	321	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1247	52	448	0	ENST00000269305.4:c.736A>G	p.Met246Val	p.M246V	ENST00000269305	NM_001126112.2	246	Atg/Gtg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142278153	142278153	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	173	348	0	ENST00000350721.4:c.1672G>T	p.Asp558Tyr	p.D558Y	ENST00000350721	NM_001184.3	558	Gac/Tac					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66280107	66280107	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	258	419	0	ENST00000273854.3:c.1582G>T	p.Glu528Ter	p.E528*	ENST00000273854	NM_004439.5	528	Gag/Tag					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143067073	143067073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	231	549	0	ENST00000262992.4:c.1640G>T	p.Gly547Val	p.G547V	ENST00000262992	NM_001101669.1	547	gGt/gTt					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99251225	99251225	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	170	434	0	ENST00000268035.6:c.529G>T	p.Glu177Ter	p.E177*	ENST00000268035	NM_000875.3	177	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578516	7578516	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	324	468	1	ENST00000269305.4:c.414delC	p.Lys139ArgfsTer31	p.K139Rfs*31	ENST00000269305	NM_001126112.2	138	gcC/gc					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2225549	2225550	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010385-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	154	447	0	ENST00000326181.6:c.1552_1553delinsTT	p.Gly518Phe	p.G518F	ENST00000326181	NM_032271.2	518	GGc/TTc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0014247-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	160	409	1	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579463	7579472	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCCACGG	GGGGCCACGG	-			P-0014962-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	250	730	0	ENST00000269305.4:c.215_224del	p.Pro72LeufsTer48	p.P72Lfs*48	ENST00000269305	NM_001126112.2	72	cCCGTGGCCCCt/ct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014890-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	33	562	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0013285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	313	695	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0013285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	183	633	1	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga					NEWRECORD																																																																									
CDK6	0	MSKCC	GRCh37	7	92300798	92300798	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	180	255	0	ENST00000265734.4:c.589G>A	p.Ala197Thr	p.A197T	ENST00000265734	NM_001259.6	197	Gcc/Acc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15276726	15276726	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	125	620	0	ENST00000263388.2:c.5539G>T	p.Ala1847Ser	p.A1847S	ENST00000263388	NM_000435.2	1847	Gcc/Tcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577517	7577517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	93	389	0	ENST00000269305.4:c.764T>C	p.Ile255Thr	p.I255T	ENST00000269305	NM_001126112.2	255	aTc/aCc					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110250455	110250455	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	58	326	0	ENST00000374672.4:c.220C>A	p.Leu74Met	p.L74M	ENST00000374672	NM_004235.4	74	Ctg/Atg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49437433	49437433	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	89	623	0	ENST00000301067.7:c.5452C>T	p.Pro1818Ser	p.P1818S	ENST00000301067	NM_003482.3	1818	Ccc/Tcc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954379	48954379	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	151	404	0	ENST00000267163.4:c.1498+2T>C		p.X500_splice	ENST00000267163	NM_000321.2	500						NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63413129	63413129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010346-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	99	640	2	ENST00000330258.3:c.38G>T	p.Gly13Val	p.G13V	ENST00000330258	NM_152424.3	13	gGa/gTa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			648	64	422	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			732	178	529	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16259895	16259895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	141	512	0	ENST00000375759.3:c.7160G>A	p.Ser2387Asn	p.S2387N	ENST00000375759	NM_015001.2	2387	aGt/aAt					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25467448	25467448	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014515-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	126	450	0	ENST00000264709.3:c.1628del	p.Gly543AlafsTer108	p.G543Afs*108	ENST00000264709	NM_175629.2	543	gGc/gc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579347	7579358	+	inframe_deletion	In_Frame_Del	DEL	AGAAGCCCAGAC	AGAAGCCCAGAC	-			P-0013203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	122	596	0	ENST00000269305.4:c.329_340del	p.Arg110_Phe113del	p.R110_F113del	ENST00000269305	NM_001126112.2	110	cGTCTGGGCTTCTtg/ctg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0013996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	74	722	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			853	131	663	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			545	101	627	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137519238	137519238	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1887415		P-0014337-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	49	584	0	ENST00000367739.4:c.1400T>C	p.Leu467Pro	p.L467P	ENST00000367739	NM_000416.2	467	cTt/cCt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	164	394	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	226	568	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16257878	16257878	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	35	277	0	ENST00000375759.3:c.5143A>T	p.Met1715Leu	p.M1715L	ENST00000375759	NM_015001.2	1715	Atg/Ttg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49443763	49443763	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	69	818	0	ENST00000301067.7:c.3608A>G	p.Asp1203Gly	p.D1203G	ENST00000301067	NM_003482.3	1203	gAc/gGc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	18	259	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	358	630	2	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11998980	11998980	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	140	572	0	ENST00000353533.5:c.483del	p.Ile161MetfsTer36	p.I161Mfs*36	ENST00000353533	NM_003010.3	161	aTt/at					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112116523	112116523	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	112	447	0	ENST00000257430.4:c.568G>T	p.Glu190Ter	p.E190*	ENST00000257430	NM_000038.5	190	Gaa/Taa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76972715	76972715	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	50	297	0	ENST00000373344.5:c.26G>T	p.Ser9Ile	p.S9I	ENST00000373344	NM_000489.3	9	aGc/aTc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31388686	31388686	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	48	694	1	ENST00000328111.2:c.1951T>A	p.Cys651Ser	p.C651S	ENST00000328111	NM_006892.3	651	Tgc/Agc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188320	10188320	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0014064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	24	475	0	ENST00000256474.2:c.463G>C	p.Val155Leu	p.V155L	ENST00000256474	NM_000551.3	155	Gtg/Ctg					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0006311-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			177	46	171	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578536	7578536	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs747342068		P-0006311-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			524	148	540	0	ENST00000269305.4:c.394A>G	p.Lys132Glu	p.K132E	ENST00000269305	NM_001126112.2	132	Aag/Gag					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150550868	150550868	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006311-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			795	73	502	0	ENST00000369026.2:c.788G>A	p.Arg263Lys	p.R263K	ENST00000369026	NM_021960.4	263	aGg/aAg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916824	178916824	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201269904		P-0006311-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1261	166	1143	2	ENST00000263967.3:c.211G>A	p.Val71Ile	p.V71I	ENST00000263967	NM_006218.2	71	Gta/Ata					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575484	64575484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006311-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			663	111	764	0	ENST00000337652.1:c.548C>G	p.Ser183Cys	p.S183C	ENST00000337652	NM_130803.2	183	tCt/tGt					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7216938	7216938	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006311-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			794	264	834	1	ENST00000380728.2:c.583C>A	p.Pro195Thr	p.P195T	ENST00000380728		195	Cct/Act					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15288352	15288352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006311-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			958	231	914	1	ENST00000263388.2:c.4387C>T	p.Arg1463Cys	p.R1463C	ENST00000263388	NM_000435.2	1463	Cgc/Tgc					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44513339	44513339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006311-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			984	69	526	0	ENST00000291552.4:c.596C>T	p.Ser199Phe	p.S199F	ENST00000291552	NM_006758.2	199	tCc/tTc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49426301	49426547	+	frameshift_variant	Frame_Shift_Del	DEL	CTGGTTCAGTGGCCATTGACTCAGGGGTAGTTCCTATTGCTAACGGCCCTCCCTGATGTGTAGAGGGCCCCTCAGTGGCCTCTGAAGAAACGGCTGGGTCTACGGTGTTTTGTTCCTTGCCCGTCAGGAGGAGGGTTGGACCCAGGGCTCCAGGGCTAGAAAAGTGTTGAAGAGGCTTTGCTGGCATGCCAGGGCCAAGTGCCACTTGCTGCTGCTGTTGTTGCTGAGGAGACAGTAAAGTTCGACT	CTGGTTCAGTGGCCATTGACTCAGGGGTAGTTCCTATTGCTAACGGCCCTCCCTGATGTGTAGAGGGCCCCTCAGTGGCCTCTGAAGAAACGGCTGGGTCTACGGTGTTTTGTTCCTTGCCCGTCAGGAGGAGGGTTGGACCCAGGGCTCCAGGGCTAGAAAAGTGTTGAAGAGGCTTTGCTGGCATGCCAGGGCCAAGTGCCACTTGCTGCTGCTGTTGTTGCTGAGGAGACAGTAAAGTTCGACT	-			P-0006311-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			923	112	895	0	ENST00000301067.7:c.11941_12187del	p.Ser3981GlufsTer3	p.S3981Efs*3	ENST00000301067	NM_003482.3	3981	AGTCGAACTTTACTGTCTCCTCAGCAACAACAGCAGCAGCAAGTGGCACTTGGCCCTGGCATGCCAGCAAAGCCTCTTCAACACTTTTCTAGCCCTGGAGCCCTGGGTCCAACCCTCCTCCTGACGGGCAAGGAACAAAACACCGTAGACCCAGCCGTTTCTTCAGAGGCCACTGAGGGGCCCTCTACACATCAGGGAGGGCCGTTAGCAATAGGAACTACCCCTGAGTCAATGGCCACTGAACCAGga/ga					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220674	1220709	+	inframe_deletion	In_Frame_Del	DEL	TCTCCGGCTTCAAGGTGGACATCTGGTCGGCTGGGG	TCTCCGGCTTCAAGGTGGACATCTGGTCGGCTGGGG	-			P-0006311-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			675	65	738	0	ENST00000326873.7:c.694_729del	p.Ser232_Val243del	p.S232_V243del	ENST00000326873	NM_000455.4	231	tTCTCCGGCTTCAAGGTGGACATCTGGTCGGCTGGGGtc/ttc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49426660	49426662	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0006311-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			375	54	331	0	ENST00000301067.7:c.11826_11828del	p.Gln3947del	p.Q3947del	ENST00000301067	NM_003482.3	3942	caACAg/cag					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436340	52436340	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006311-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			709	44	652	0	ENST00000460680.1:c.2154del	p.Lys719AsnfsTer17	p.K719Nfs*17	ENST00000460680	NM_004656.3	718	cgG/cg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49426678	49426695	+	inframe_deletion	In_Frame_Del	DEL	TGCTGTTGCTGCTGTTGA	TGCTGTTGCTGCTGTTGA	-			P-0006311-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			305	37	259	0	ENST00000301067.7:c.11793_11810del	p.Gln3934_Gln3939del	p.Q3934_Q3939del	ENST00000301067	NM_003482.3	3931	ctTCAACAGCAGCAACAGCAg/ctg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	30	122	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	176	688	0	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6414400	6414400	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	65	217	0	ENST00000356142.4:c.34G>A	p.Gly12Arg	p.G12R	ENST00000356142	NM_018890.3	12	Gga/Aga					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7143018	7143018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	99	503	0	ENST00000302850.5:c.2351C>T	p.Ser784Phe	p.S784F	ENST00000302850	NM_000208.2	784	tCc/tTc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187549725	187549725	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199516712		P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	129	566	0	ENST00000441802.2:c.4516C>T	p.Arg1506Cys	p.R1506C	ENST00000441802	NM_005245.3	1506	Cgt/Tgt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46230641	46230642	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	187	783	2	ENST00000334344.6:c.890_891delinsTT	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCC/tTT					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32937348	32937348	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	54	452	0	ENST00000380152.3:c.8009C>T	p.Ser2670Leu	p.S2670L	ENST00000380152		2670	tCg/tTg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10031891	10031891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	101	705	1	ENST00000330684.3:c.932C>T	p.Ser311Phe	p.S311F	ENST00000330684	NM_001134407.1	311	tCc/tTc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68863556	68863557	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	AA			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	101	633	2	ENST00000261769.5:c.2296-1_2296delinsAA		p.X766_splice	ENST00000261769	NM_004360.3	766						NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37667840	37667840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	221	796	1	ENST00000447079.4:c.2725G>A	p.Gly909Arg	p.G909R	ENST00000447079	NM_015083.1	909	Gga/Aga					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58740898	58740901	+	frameshift_variant	Frame_Shift_Del	DEL	TGTT	TGTT	-			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	161	910	0	ENST00000305921.3:c.1806_1809del	p.Cys603PhefsTer21	p.C603Ffs*21	ENST00000305921	NM_003620.3	601	acTGTT/ac					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25463170	25463170	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	188	628	0	ENST00000264709.3:c.2322+1G>A		p.X774_splice	ENST00000264709	NM_175629.2	774						NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25464507	25464507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	220	718	0	ENST00000264709.3:c.2006C>T	p.Ser669Phe	p.S669F	ENST00000264709	NM_175629.2	669	tCc/tTc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212483981	212483981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	108	635	0	ENST00000342788.4:c.2222G>A	p.Gly741Glu	p.G741E	ENST00000342788	NM_005235.2	741	gGa/gAa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40757438	40757438	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	178	723	1	ENST00000373198.4:c.2860G>A	p.Asp954Asn	p.D954N	ENST00000373198	NM_133170.3	954	Gat/Aat					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189526060	189526060	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	97	586	0	ENST00000264731.3:c.325-1G>A		p.X109_splice	ENST00000264731	NM_003722.4	109						NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55141096	55141096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	100	556	1	ENST00000257290.5:c.1742C>T	p.Pro581Leu	p.P581L	ENST00000257290	NM_006206.4	581	cCt/cTt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175795	112175796	+	missense_variant	Missense_Mutation	DNP	TG	TG	CT			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	32	389	0	ENST00000257430.4:c.4504_4505delinsCT	p.Cys1502Leu	p.C1502L	ENST00000257430	NM_000038.5	1502	TGt/CTt					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93956637	93956637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	73	945	2	ENST00000369303.4:c.2599C>A	p.Gln867Lys	p.Q867K	ENST00000369303	NM_004440.3	867	Cag/Aag					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13975481	13975481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	203	443	1	ENST00000405192.2:c.406A>G	p.Asn136Asp	p.N136D	ENST00000405192	NM_001163147.1	136	Aac/Gac					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467967	50467967	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	39	547	0	ENST00000331340.3:c.1202A>G	p.Glu401Gly	p.E401G	ENST00000331340	NM_006060.4	401	gAg/gGg					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81355233	81355233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	290	654	0	ENST00000222390.5:c.1141C>T	p.Pro381Ser	p.P381S	ENST00000222390	NM_000601.4	381	Cca/Tca					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38271178	38271178	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013910-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	33	398	2	ENST00000425967.3:c.2530C>T	p.Gln844Ter	p.Q844*	ENST00000425967	NM_001174067.1	844	Cag/Tag					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0010133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	168	402	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	404	484	0	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14042083	14042083	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	72	430	0	ENST00000311895.7:c.2630C>T	p.Ala877Val	p.A877V	ENST00000311895	NM_005236.2	877	gCa/gTa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	255	618	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29541577	29541577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012284-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	173	429	0	ENST00000358273.4:c.1501C>A	p.His501Asn	p.H501N	ENST00000358273	NM_001042492.2	501	Cat/Aat					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			134	34	306	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			346	219	579	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27058033	27058033	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	254	496	0	ENST00000324856.7:c.1741C>T	p.Gln581Ter	p.Q581*	ENST00000324856	NM_006015.4	581	Cag/Tag					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100922171	100922171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	80	458	1	ENST00000325455.5:c.2341G>A	p.Asp781Asn	p.D781N	ENST00000325455	NM_001202474.3	781	Gat/Aat					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022871	31022878	+	frameshift_variant	Frame_Shift_Del	DEL	AGAACTGA	AGAACTGA	-			P-0014421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	67	513	0	ENST00000375687.4:c.2357_2364del	p.Arg786MetfsTer2	p.R786Mfs*2	ENST00000375687	NM_015338.5	786	AGAACTGAa/a					NEWRECORD																																																																									
AGO2	0	MSKCC	GRCh37	8	141582928	141582928	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014421-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	237	610	0	ENST00000220592.5:c.319C>G	p.Pro107Ala	p.P107A	ENST00000220592	NM_012154.3	107	Ccg/Gcg					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247244	153247244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	117	412	0	ENST00000281708.4:c.1558G>A	p.Asp520Asn	p.D520N	ENST00000281708	NM_033632.3	520	Gat/Aat					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411279	63411279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	41	230	0	ENST00000330258.3:c.1888G>T	p.Ala630Ser	p.A630S	ENST00000330258	NM_152424.3	630	Gcc/Tcc					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20153903	20153903	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	31	128	0	ENST00000379607.5:c.157G>A	p.Asp53Asn	p.D53N	ENST00000379607	NM_001412.3	53	Gat/Aat					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212568857	212568857	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	118	355	0	ENST00000342788.4:c.1261G>T	p.Val421Leu	p.V421L	ENST00000342788	NM_005235.2	421	Gtg/Ttg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212652816	212652816	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	108	439	0	ENST00000342788.4:c.490C>A	p.Gln164Lys	p.Q164K	ENST00000342788	NM_005235.2	164	Caa/Aaa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532783	187532783	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	86	408	0	ENST00000441802.2:c.9610C>T	p.Gln3204Ter	p.Q3204*	ENST00000441802	NM_005245.3	3204	Caa/Taa					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86564809	86564809	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	103	493	0	ENST00000274376.6:c.539+2T>G		p.X180_splice	ENST00000274376	NM_002890.2	180						NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149499666	149499666	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	82	370	0	ENST00000261799.4:c.2607G>C	p.Trp869Cys	p.W869C	ENST00000261799	NM_002609.3	869	tgG/tgC					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41133731	41133731	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	110	516	0	ENST00000379561.5:c.1897G>C	p.Asp633His	p.D633H	ENST00000379561	NM_002015.3	633	Gac/Cac					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36031707	36031707	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011402-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	59	418	0	ENST00000358208.4:c.1536C>G	p.Phe512Leu	p.F512L	ENST00000358208		512	ttC/ttG					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	160	126	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12011225	12011225	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	83	180	0	ENST00000353533.5:c.632C>A	p.Ala211Glu	p.A211E	ENST00000353533	NM_003010.3	211	gCa/gAa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139418204	139418204	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs187473846		P-0010457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	312	325	0	ENST00000277541.6:c.368C>T	p.Thr123Met	p.T123M	ENST00000277541	NM_017617.3	123	aCg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0010457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	236	195	0	ENST00000269305.4:c.374C>G	p.Thr125Arg	p.T125R	ENST00000269305	NM_001126112.2	125	aCg/aGg					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21555706	21555706	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	340	360	0	ENST00000382592.4:c.2564A>G	p.Lys855Arg	p.K855R	ENST00000382592	NM_014572.2	855	aAg/aGg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29005422	29005422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	155	244	0	ENST00000282397.4:c.839G>T	p.Arg280Leu	p.R280L	ENST00000282397	NM_002019.4	280	cGa/cTa					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41215373	41215373	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	302	262	0	ENST00000357654.3:c.5170A>T	p.Lys1724Ter	p.K1724*	ENST00000357654	NM_007294.3	1724	Aaa/Taa					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39721135	39721135	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	317	304	0	ENST00000361337.2:c.638A>G	p.Glu213Gly	p.E213G	ENST00000361337	NM_003286.2	213	gAa/gGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579718	7579718	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	214	769	2	ENST00000269305.4:c.78delT	p.Pro27LeufsTer17	p.P27Lfs*17	ENST00000269305	NM_001126112.2	26	ctT/ct					NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30133193	30133193	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			203	95	347	1	ENST00000263025.4:c.305G>C	p.Gly102Ala	p.G102A	ENST00000263025	NM_002746.2	102	gGc/gCc					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41246509	41246509	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	205	617	0	ENST00000357654.3:c.1039del	p.Leu347CysfsTer27	p.L347Cfs*27	ENST00000357654	NM_007294.3	347	Ctg/tg					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23538906	23538906	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014299-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			188	145	418	4	ENST00000380871.4:c.533A>G	p.Lys178Arg	p.K178R	ENST00000380871	NM_006167.3	178	aAg/aGg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	37	337	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139413072	139413072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	115	666	0	ENST00000277541.6:c.1070T>C	p.Phe357Ser	p.F357S	ENST00000277541	NM_017617.3	357	tTc/tCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0014017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	73	387	0	ENST00000269305.4:c.920-2A>G		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32181530	32181530	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	54	501	0	ENST00000375023.3:c.2255A>G	p.Tyr752Cys	p.Y752C	ENST00000375023	NM_004557.3	752	tAc/tGc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974761	21974771	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGGCCGCGG	CCGGGCCGCGG	-			P-0014017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	43	391	0	ENST00000304494.5:c.56_66del	p.Ala19GlyfsTer21	p.A19Gfs*21	ENST00000304494	NM_000077.4	19	gCCGCGGCCCGG/g					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974761	21974771	+	frameshift_variant	Frame_Shift_Del	DEL	CCGGGCCGCGG	CCGGGCCGCGG	-			P-0014017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	43	391	0	ENST00000304494.5:c.56_66del	p.Ala19GlyfsTer21	p.A19Gfs*21	ENST00000304494	NM_000077.4	19	gCCGCGGCCCGG/g					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0013417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	97	919	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729537	41729537	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1272	75	1417	0	ENST00000242208.4:c.992A>T	p.Lys331Met	p.K331M	ENST00000242208	NM_002192.2	331	aAg/aTg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971030	21971066	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTG	AGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTG	-			P-0013417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	60	236	0	ENST00000304494.5:c.292_328delCACCGGGCCGGGGCGCGGCTGGACGTGCGCGATGCCT	p.His98GlyfsTer36	p.H98Gfs*36	ENST00000304494	NM_000077.4	98	CACCGGGCCGGGGCGCGGCTGGACGTGCGCGATGCCTgg/gg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971030	21971066	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTG	AGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTG	-			P-0013417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	60	236	0	ENST00000304494.5:c.292_328delCACCGGGCCGGGGCGCGGCTGGACGTGCGCGATGCCT	p.His98GlyfsTer36	p.H98Gfs*36	ENST00000304494	NM_000077.4	98	CACCGGGCCGGGGCGCGGCTGGACGTGCGCGATGCCTgg/gg					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971030	21971066	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTG	AGGCATCGCGCACGTCCAGCCGCGCCCCGGCCCGGTG	-			P-0013417-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	60	236	0	ENST00000304494.5:c.292_328delCACCGGGCCGGGGCGCGGCTGGACGTGCGCGATGCCT	p.His98GlyfsTer36	p.H98Gfs*36	ENST00000304494	NM_000077.4	98	CACCGGGCCGGGGCGCGGCTGGACGTGCGCGATGCCTgg/gg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	273	470	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108121591	108121591	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	74	513	0	ENST00000278616.4:c.1399G>C	p.Asp467His	p.D467H	ENST00000278616	NM_000051.3	467	Gac/Cac					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48951140	48951140	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	153	421	0	ENST00000267163.4:c.1304del	p.Gly435AspfsTer22	p.G435Dfs*22	ENST00000267163	NM_000321.2	434	gtG/gt					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	743307	743307	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014221-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1683	121	661	0	ENST00000314574.4:c.833G>T	p.Arg278Leu	p.R278L	ENST00000314574	NM_005433.3	278	cGa/cTa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	170	874	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71102918	71102918	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148369068		P-0014597-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	32	317	0	ENST00000318789.4:c.289G>A	p.Val97Met	p.V97M	ENST00000318789	NM_032682.5	97	Gtg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0010598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	242	380	1	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17945406	17945406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010598-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	166	631	2	ENST00000458235.1:c.2324G>A	p.Arg775His	p.R775H	ENST00000458235	NM_000215.3	775	cGt/cAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	547	692	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135797205	135797205	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0012148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	513	719	0	ENST00000298552.3:c.663+1G>T		p.X221_splice	ENST00000298552	NM_001162426.1	221						NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45396897	45396897	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	248	621	0	ENST00000262160.6:c.275C>T	p.Thr92Met	p.T92M	ENST00000262160	NM_005901.5	92	aCg/aTg					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589216	67589251	+	inframe_deletion	In_Frame_Del	DEL	GTTGAATTAATAAACCACTACCGGAATGAATCTCTA	GTTGAATTAATAAACCACTACCGGAATGAATCTCTA	-			P-0012148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	629	630	2	ENST00000274335.5:c.1205_1240del	p.Val402_Leu413del	p.V402_L413del	ENST00000274335		402	GTTGAATTAATAAACCACTACCGGAATGAATCTCTA/-					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3781375	3781375	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013753-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	67	532	1	ENST00000262367.5:c.4990C>T	p.Arg1664Cys	p.R1664C	ENST00000262367	NM_004380.2	1664	Cgc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	1062	501	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11308139	11308139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	216	423	0	ENST00000361445.4:c.853G>C	p.Glu285Gln	p.E285Q	ENST00000361445	NM_004958.3	285	Gaa/Caa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108129803	108129803	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			164	155	292	0	ENST00000278616.4:c.2466+1G>T		p.X822_splice	ENST00000278616	NM_000051.3	822						NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344186	118344186	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	303	557	0	ENST00000534358.1:c.2312C>A	p.Thr771Asn	p.T771N	ENST00000534358	NM_005933.3	771	aCc/aAc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061433	38061433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	131	485	2	ENST00000250448.2:c.556G>A	p.Ala186Thr	p.A186T	ENST00000250448	NM_004496.3	186	Gcg/Acg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042205	42042205	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	234	554	2	ENST00000219905.7:c.6402del	p.Phe2134LeufsTer45	p.F2134Lfs*45	ENST00000219905	NM_001164273.1	2134	Ttt/tt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9943743	9943743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014724-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	243	523	0	ENST00000330684.3:c.1198G>A	p.Glu400Lys	p.E400K	ENST00000330684	NM_001134407.1	400	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	120	503	1	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6426904	6426904	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	181	482	0	ENST00000356142.4:c.97A>T	p.Ile33Phe	p.I33F	ENST00000356142	NM_018890.3	33	Atc/Ttc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954213	48954229	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATTTTAGGTAAATTTT	AATTTTAGGTAAATTTT	-			P-0010222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	216	651	0	ENST00000267163.4:c.1414_1421+9del		p.X472_splice	ENST00000267163	NM_000321.2	472						NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003616-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			357	503	371	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80430562	80430562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003616-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			398	149	193	0	ENST00000286548.4:c.446G>A	p.Arg149Gln	p.R149Q	ENST00000286548	NM_002072.3	149	cGa/cAa					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63759985	63759985	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0003616-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			619	254	325	0	ENST00000279873.7:c.638T>C	p.Ile213Thr	p.I213T	ENST00000279873	NM_032199.2	213	aTt/aCt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123181276	123181278	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0003616-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			500	180	216	0	ENST00000218089.9:c.741_743delATA	p.Gln247_Tyr248delinsHis	p.Q247_Y248delinsH	ENST00000218089	NM_001042749.1	247	cAATat/cat					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	500	406	1	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18279922	18279922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	865	400	3	ENST00000222254.8:c.2005G>A	p.Val669Ile	p.V669I	ENST00000222254	NM_005027.3	669	Gtc/Atc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	367	510	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	191	568	1	ENST00000269305.4:c.722C>A	p.Ser241Tyr	p.S241Y	ENST00000269305	NM_001126112.2	241	tCc/tAc					NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	172	626	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149616	202149616	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			464	121	383	0	ENST00000358485.4:c.1057G>A	p.Glu353Lys	p.E353K	ENST00000358485	NM_001080125.1	353	Gag/Aag					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999492	100999492	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			944	277	949	0	ENST00000325455.5:c.310C>G	p.Pro104Ala	p.P104A	ENST00000325455	NM_001202474.3	104	Cca/Gca					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59870990	59870990	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	101	431	0	ENST00000259008.2:c.1441G>T	p.Gly481Cys	p.G481C	ENST00000259008	NM_032043.2	481	Ggt/Tgt					NEWRECORD																																																																									
WHSC1L1	0	MSKCC	GRCh37	8	38187387	38187387	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015073-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	86	395	0	ENST00000317025.8:c.1090G>T	p.Glu364Ter	p.E364*	ENST00000317025	NM_023034.1	364	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	265	367	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332						NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766357	66766395	+	inframe_deletion	In_Frame_Del	DEL	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	-			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	48	58	1	ENST00000374690.3:c.1382_1420delGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG	p.Gly461_Gly473del	p.G461_G473del	ENST00000374690	NM_000044.3	457	GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC/-					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120484319	120484319	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	131	453	2	ENST00000256646.2:c.2811C>A	p.Cys937Ter	p.C937*	ENST00000256646	NM_024408.3	937	tgC/tgA					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27839897	27839897	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1458	202	890	0	ENST00000328488.2:c.197T>G	p.Leu66Arg	p.L66R	ENST00000328488	NM_003533.2	66	cTa/cGa					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64138145	64138145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	108	324	0	ENST00000334205.4:c.2068G>A	p.Val690Met	p.V690M	ENST00000334205	NM_003942.2	690	Gtg/Atg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108172462	108172462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1451	166	498	0	ENST00000278616.4:c.5265G>T	p.Met1755Ile	p.M1755I	ENST00000278616	NM_000051.3	1755	atG/atT					NEWRECORD																																																																									
HOXB13	0	MSKCC	GRCh37	17	46805618	46805618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1239	206	685	2	ENST00000290295.7:c.338C>A	p.Thr113Asn	p.T113N	ENST00000290295	NM_006361.5	113	aCt/aAt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717640	89717642	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	309	398	3	ENST00000371953.3:c.665_667del	p.Val222_Lys223delinsGlu	p.V222_K223delinsE	ENST00000371953	NM_000314.4	222	gTGAag/gag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717647	89717656	+	frameshift_variant	Frame_Shift_Del	DEL	ATATTCCTCC	ATATTCCTCC	-			P-0010171-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	312	413	3	ENST00000371953.3:c.673_682del	p.Tyr225IlefsTer28	p.Y225Ifs*28	ENST00000371953	NM_000314.4	224	atATATTCCTCC/at					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	55	419	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18552670	18552670	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	48	611	0	ENST00000266497.5:c.2081T>C	p.Val694Ala	p.V694A	ENST00000266497		694	gTc/gCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579309	7579312	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACC	GACC	-			P-0012535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	66	325	1	ENST00000269305.4:c.375_375+3del		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	119	428	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18544079	18544079	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	117	451	0	ENST00000266497.5:c.1896G>T	p.Trp632Cys	p.W632C	ENST00000266497		632	tgG/tgT					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73340179	73340179	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	79	527	0	ENST00000377767.4:c.1901C>T	p.Ser634Phe	p.S634F	ENST00000377767	NM_014953.3	634	tCt/tTt					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78428507	78428507	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	154	699	0	ENST00000370768.2:c.1292G>T	p.Gly431Val	p.G431V	ENST00000370768	NM_003902.3	431	gGc/gTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41076917	41076917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	98	758	0	ENST00000373198.4:c.1503G>T	p.Lys501Asn	p.K501N	ENST00000373198	NM_133170.3	501	aaG/aaT					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45798275	45798275	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	71	534	0	ENST00000372115.3:c.619G>T	p.Gly207Trp	p.G207W	ENST00000372115	NM_001048171.1	207	Ggg/Tgg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120462180	120462180	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	73	513	0	ENST00000256646.2:c.5536G>A	p.Asp1846Asn	p.D1846N	ENST00000256646	NM_024408.3	1846	Gat/Aat					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085687	16085687	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	183	629	0	ENST00000281043.3:c.863C>G	p.Ser288Cys	p.S288C	ENST00000281043	NM_005378.4	288	tCc/tGc					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61717860	61717860	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	98	837	2	ENST00000401558.2:c.1939C>T	p.Gln647Ter	p.Q647*	ENST00000401558	NM_003400.3	647	Caa/Taa					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215610499	215610499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	153	696	1	ENST00000260947.4:c.1757G>T	p.Ser586Ile	p.S586I	ENST00000260947	NM_000465.2	586	aGt/aTt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164421	47164421	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	163	586	0	ENST00000409792.3:c.1705T>C	p.Phe569Leu	p.F569L	ENST00000409792	NM_014159.6	569	Ttt/Ctt					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55136904	55136904	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	138	605	0	ENST00000257290.5:c.1226T>C	p.Leu409Pro	p.L409P	ENST00000257290	NM_006206.4	409	cTg/cCg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55564524	55564524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	70	519	0	ENST00000288135.5:c.412C>A	p.Leu138Ile	p.L138I	ENST00000288135	NM_000222.2	138	Ctc/Atc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532858	187532858	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	139	553	2	ENST00000441802.2:c.9535G>T	p.Gly3179Ter	p.G3179*	ENST00000441802	NM_005245.3	3179	Gga/Tga					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93965709	93965709	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	97	892	0	ENST00000369303.4:c.2219G>C	p.Arg740Thr	p.R740T	ENST00000369303	NM_004440.3	740	aGa/aCa					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	149982885	149982885	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139248642		P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	128	536	0	ENST00000253339.5:c.3373C>T	p.Arg1125Cys	p.R1125C	ENST00000253339		1125	Cgc/Tgc					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152332814	152332814	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	196	774	0	ENST00000206249.3:c.1120G>T	p.Asp374Tyr	p.D374Y	ENST00000206249	NM_000125.3	374	Gat/Tat					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729844	41729844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	209	844	2	ENST00000242208.4:c.685C>T	p.Arg229Trp	p.R229W	ENST00000242208	NM_002192.2	229	Cgg/Tgg					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41739756	41739756	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	155	918	0	ENST00000242208.4:c.217G>C	p.Asp73His	p.D73H	ENST00000242208	NM_002192.2	73	Gat/Cat					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81350107	81350107	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	145	749	0	ENST00000222390.5:c.1225G>T	p.Gly409Ter	p.G409*	ENST00000222390	NM_000601.4	409	Gga/Tga					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508146	106508146	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	40	258	0	ENST00000359195.3:c.140G>T	p.Ser47Ile	p.S47I	ENST00000359195	NM_002649.2	47	aGc/aTc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140482900	140482900	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	95	678	0	ENST00000288602.6:c.1235A>G	p.Asn412Ser	p.N412S	ENST00000288602	NM_004333.4	412	aAc/aGc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878241	151878241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	158	618	1	ENST00000262189.6:c.6704G>T	p.Arg2235Met	p.R2235M	ENST00000262189	NM_170606.2	2235	aGg/aTg					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759502	133759502	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	88	805	0	ENST00000318560.5:c.1825A>T	p.Lys609Ter	p.K609*	ENST00000318560	NM_005157.4	609	Aag/Tag					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43609075	43609075	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	89	866	0	ENST00000355710.3:c.1831T>A	p.Cys611Ser	p.C611S	ENST00000355710	NM_020975.4	611	Tgc/Agc					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64574511	64574511	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	86	674	1	ENST00000337652.1:c.899G>T	p.Arg300Leu	p.R300L	ENST00000337652	NM_130803.2	300	cGg/cTg					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625319	69625319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	81	758	2	ENST00000334134.2:c.474C>A	p.Asn158Lys	p.N158K	ENST00000334134	NM_005247.2	158	aaC/aaA					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108143469	108143469	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	86	924	0	ENST00000278616.4:c.3174G>T	p.Trp1058Cys	p.W1058C	ENST00000278616	NM_000051.3	1058	tgG/tgT					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425501	49425501	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	96	1054	0	ENST00000301067.7:c.12987G>C	p.Gln4329His	p.Q4329H	ENST00000301067	NM_003482.3	4329	caG/caC					NEWRECORD																																																																									
SMARCD1	0	MSKCC	GRCh37	12	50484043	50484043	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	68	646	0	ENST00000394963.4:c.893A>C	p.Asp298Ala	p.D298A	ENST00000394963	NM_003076.4	298	gAc/gCc					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112892369	112892369	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	71	629	0	ENST00000351677.2:c.527A>T	p.Glu176Val	p.E176V	ENST00000351677	NM_002834.3	176	gAa/gTa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88576193	88576193	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	62	569	0	ENST00000360948.2:c.1480C>A	p.Leu494Met	p.L494M	ENST00000360948	NM_001012338.2	494	Ctg/Atg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89877476	89877476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	84	644	1	ENST00000389301.3:c.287C>T	p.Ser96Phe	p.S96F	ENST00000389301	NM_000135.2	96	tCt/tTt					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41223061	41223061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	98	856	1	ENST00000357654.3:c.4870G>T	p.Gly1624Trp	p.G1624W	ENST00000357654	NM_007294.3	1624	Ggg/Tgg					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45375004	45375004	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	62	485	0	ENST00000262160.6:c.839A>T	p.Tyr280Phe	p.Y280F	ENST00000262160	NM_005901.5	280	tAt/tTt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1219413	1219413	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	115	488	0	ENST00000326873.7:c.464+1G>T		p.X155_splice	ENST00000326873	NM_000455.4	155						NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11134306	11134306	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	109	444	0	ENST00000344626.4:c.2972A>C	p.Lys991Thr	p.K991T	ENST00000344626	NM_003072.3	991	aAg/aCg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561204	9561204	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	332	725	2	ENST00000353224.5:c.578C>A	p.Ala193Asp	p.A193D	ENST00000353224	NM_177990.2	193	gCc/gAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40739100	40739100	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	187	526	3	ENST00000373198.4:c.3184C>T	p.Arg1062Cys	p.R1062C	ENST00000373198	NM_133170.3	1062	Cgc/Tgc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44938537	44938537	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	98	388	0	ENST00000377967.4:c.3085C>G	p.His1029Asp	p.H1029D	ENST00000377967	NM_021140.2	1029	Cat/Gat					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	41	538	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	345	286	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27778071	27778071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	366	1312	1	ENST00000369163.2:c.220G>A	p.Glu74Lys	p.E74K	ENST00000369163	NM_003536.2	74	Gag/Aag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151874803	151874803	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	165	394	0	ENST00000262189.6:c.7735G>C	p.Gly2579Arg	p.G2579R	ENST00000262189	NM_170606.2	2579	Ggc/Cgc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187629537	187629538	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0013915-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	185	568	0	ENST00000441802.2:c.1444_1445delinsAG	p.Val482Ser	p.V482S	ENST00000441802	NM_005245.3	482	GTc/AGc					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	83	319	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	194	285	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27088788	27088788	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	161	420	0	ENST00000324856.7:c.2402del	p.Gly801ValfsTer32	p.G801Vfs*32	ENST00000324856	NM_006015.4	799	caG/ca					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163910	47163910	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	116	405	0	ENST00000409792.3:c.2216A>G	p.His739Arg	p.H739R	ENST00000409792	NM_014159.6	739	cAt/cGt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52584493	52584493	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	68	468	0	ENST00000394830.3:c.4520T>A	p.Ile1507Asn	p.I1507N	ENST00000394830	NM_018313.4	1507	aTt/aAt					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115109908	115109908	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011104-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	56	193	0	ENST00000257566.3:c.1970C>G	p.Thr657Ser	p.T657S	ENST00000257566	NM_016569.3	657	aCc/aGc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	26	322	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0012787-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	10	403	1	ENST00000256078.4:c.34_35delinsAT	p.Gly12Ile	p.G12I	ENST00000256078	NM_033360.2	12	GGt/ATt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	116	482	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	74	563	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120466558	120466558	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1237	233	775	0	ENST00000256646.2:c.4561G>T	p.Gly1521Trp	p.G1521W	ENST00000256646	NM_024408.3	1521	Ggg/Tgg					NEWRECORD																																																																									
EPCAM	0	MSKCC	GRCh37	2	47607041	47607041	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	137	781	1	ENST00000263735.4:c.791T>C	p.Leu264Pro	p.L264P	ENST00000263735	NM_002354.2	264	cTa/cCa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89390201	89390201	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	62	742	0	ENST00000336596.2:c.950C>A	p.Pro317His	p.P317H	ENST00000336596	NM_005233.5	317	cCt/cAt					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134968212	134968212	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	84	839	1	ENST00000398015.3:c.2725G>A	p.Asp909Asn	p.D909N	ENST00000398015	NM_004441.4	909	Gac/Aac					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467679	66467679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	45	554	0	ENST00000273854.3:c.590C>A	p.Thr197Lys	p.T197K	ENST00000273854	NM_004439.5	197	aCa/aAa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2968311	2968311	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	50	690	0	ENST00000396946.4:c.1675A>T	p.Ser559Cys	p.S559C	ENST00000396946	NM_032415.4	559	Agc/Tgc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425634	49425634	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	53	638	1	ENST00000301067.7:c.12854G>T	p.Gly4285Val	p.G4285V	ENST00000301067	NM_003482.3	4285	gGc/gTc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133220509	133220509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	55	552	0	ENST00000320574.5:c.4204G>A	p.Val1402Met	p.V1402M	ENST00000320574	NM_006231.2	1402	Gtg/Atg					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15378289	15378289	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1491	150	1024	0	ENST00000263377.2:c.497C>T	p.Thr166Ile	p.T166I	ENST00000263377	NM_058243.2	166	aCa/aTa					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022481	31022481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	27	278	2	ENST00000375687.4:c.1966G>A	p.Asp656Asn	p.D656N	ENST00000375687	NM_015338.5	656	Gat/Aat					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765427	66765427	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	29	358	0	ENST00000374690.3:c.439C>G	p.Gln147Glu	p.Q147E	ENST00000374690	NM_000044.3	147	Cag/Gag					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411605	63411606	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0011142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	97	551	0	ENST00000330258.3:c.1561_1562delinsTT	p.Gly521Leu	p.G521L	ENST00000330258	NM_152424.3	521	GGa/TTa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108165756	108165756	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	74	323	0	ENST00000278616.4:c.4879C>T	p.Gln1627Ter	p.Q1627*	ENST00000278616	NM_000051.3	1627	Cag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	148	423	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108199953	108199953	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010176-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	63	373	0	ENST00000278616.4:c.7296del	p.Gln2433ArgfsTer7	p.Q2433Rfs*7	ENST00000278616	NM_000051.3	2432	aTt/at					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599321	55599321	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	68	546	0	ENST00000288135.5:c.2447A>T	p.Asp816Val	p.D816V	ENST00000288135	NM_000222.2	816	gAc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	140	602	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67457303	67457303	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	173	615	1	ENST00000327367.4:c.277C>T	p.Arg93Ter	p.R93*	ENST00000327367	NM_005902.3	93	Cga/Tga					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70406658	70406658	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	129	648	0	ENST00000373644.4:c.4172C>G	p.Ala1391Gly	p.A1391G	ENST00000373644	NM_030625.2	1391	gCa/gGa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29592293	29592293	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	62	648	0	ENST00000358273.4:c.4771A>C	p.Ser1591Arg	p.S1591R	ENST00000358273	NM_001042492.2	1591	Agt/Cgt					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45395636	45395636	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	167	570	0	ENST00000262160.6:c.498C>G	p.His166Gln	p.H166Q	ENST00000262160	NM_005901.5	166	caC/caG					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720806	89720806	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011445-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	43	168	0	ENST00000371953.3:c.959delT	p.Leu320Ter	p.L320*	ENST00000371953	NM_000314.4	319	acT/ac					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2121873	2121873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	27	452	2	ENST00000219476.3:c.2035G>A	p.Val679Met	p.V679M	ENST00000219476	NM_000548.3	679	Gtg/Atg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0013298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	94	478	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914808	32914808	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	126	1143	0	ENST00000380152.3:c.6316C>A	p.Leu2106Ile	p.L2106I	ENST00000380152		2106	Ctt/Att					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2222191	2222191	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	44	717	0	ENST00000398665.3:c.3023C>G	p.Ser1008Cys	p.S1008C	ENST00000398665	NM_032482.2	1008	tCc/tGc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2223318	2223318	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	41	1035	0	ENST00000398665.3:c.3429C>G	p.Ile1143Met	p.I1143M	ENST00000398665	NM_032482.2	1143	atC/atG					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39742704	39742704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013298-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	72	644	0	ENST00000361337.2:c.1547C>G	p.Pro516Arg	p.P516R	ENST00000361337	NM_003286.2	516	cCa/cGa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44922966	44922966	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			827	209	586	0	ENST00000377967.4:c.1827C>G	p.Tyr609Ter	p.Y609*	ENST00000377967	NM_021140.2	609	taC/taG					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339981	70339981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	264	550	0	ENST00000374080.3:c.514G>A	p.Glu172Lys	p.E172K	ENST00000374080		172	Gag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101213	27101213	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	84	527	0	ENST00000324856.7:c.4495C>T	p.Gln1499Ter	p.Q1499*	ENST00000324856	NM_006015.4	1499	Cag/Tag					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40367055	40367055	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1425	166	785	0	ENST00000397332.2:c.142G>T	p.Asp48Tyr	p.D48Y	ENST00000397332	NM_001033082.2	48	Gat/Tat					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828074	72828074	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			934	409	678	2	ENST00000268489.5:c.8507C>T	p.Ser2836Phe	p.S2836F	ENST00000268489	NM_006885.3	2836	tCc/tTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7572947	7572947	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	117	458	0	ENST00000269305.4:c.1162G>A	p.Glu388Lys	p.E388K	ENST00000269305	NM_001126112.2	388	Gaa/Aaa					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36259307	36259307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	98	431	1	ENST00000300305.3:c.184G>A	p.Asp62Asn	p.D62N	ENST00000300305		62	Gac/Aac					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176637835	176637842	+	frameshift_variant	Frame_Shift_Del	DEL	TGAAATGC	TGAAATGC	-			P-0014507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1121	74	565	0	ENST00000439151.2:c.2437_2444del	p.Lys813LeufsTer3	p.K813Lfs*3	ENST00000439151	NM_022455.4	812	tTGAAATGC/t					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44938567	44938567	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014507-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	92	500	0	ENST00000377967.4:c.3115C>T	p.Gln1039Ter	p.Q1039*	ENST00000377967	NM_021140.2	1039	Cag/Tag					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128204798	128204798	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1760	632	1122	0	ENST00000341105.2:c.643G>C	p.Val215Leu	p.V215L	ENST00000341105	NM_032638.4	215	Gtg/Ctg					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27840003	27840003	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1676	355	1447	4	ENST00000328488.2:c.91C>A	p.Pro31Thr	p.P31T	ENST00000328488	NM_003533.2	31	Ccg/Acg					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150016266	150016266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	294	978	2	ENST00000253339.5:c.440G>A	p.Arg147Gln	p.R147Q	ENST00000253339		147	cGa/cAa					NEWRECORD																																																																									
TIMM8B	0	MSKCC	GRCh37	11	111956131	111956131	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs116405897		P-0013379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	180	537	1	ENST00000541231.1:c.185G>A	p.Arg62His	p.R62H	ENST00000541231		62	cGc/cAc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48919331	48919331	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	161	457	2	ENST00000267163.4:c.496G>T	p.Glu166Ter	p.E166*	ENST00000267163	NM_000321.2	166	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579311	7579312	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0013379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	163	589	0	ENST00000269305.4:c.375_375+1delinsTT		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2210644	2210644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	260	679	0	ENST00000398665.3:c.1141G>C	p.Ala381Pro	p.A381P	ENST00000398665	NM_032482.2	381	Gcg/Ccg					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	163	403	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	235	490	0	ENST00000269305.4:c.814G>C	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ctg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47139513	47139513	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	97	822	1	ENST00000409792.3:c.5074G>T	p.Glu1692Ter	p.E1692*	ENST00000409792	NM_014159.6	1692	Gaa/Taa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47158245	47158245	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	82	240	0	ENST00000409792.3:c.4455-1G>T		p.X1485_splice	ENST00000409792	NM_014159.6	1485						NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186502766	186502766	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1050	331	889	0	ENST00000323963.5:c.224C>A	p.Ala75Asp	p.A75D	ENST00000323963		75	gCt/gAt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878657	151878657	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	159	478	0	ENST00000262189.6:c.6288G>T	p.Gln2096His	p.Q2096H	ENST00000262189	NM_170606.2	2096	caG/caT					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577173	64577173	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1236	337	714	0	ENST00000337652.1:c.409C>G	p.Arg137Gly	p.R137G	ENST00000337652	NM_130803.2	137	Cgg/Ggg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573597	48573597	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	170	408	0	ENST00000342988.3:c.181A>G	p.Ile61Val	p.I61V	ENST00000342988	NM_005359.5	61	Ata/Gta					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2222350	2222350	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	62	269	0	ENST00000398665.3:c.3182C>G	p.Ser1061Cys	p.S1061C	ENST00000398665	NM_032482.2	1061	tCc/tGc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8517938	8517939	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010257-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	156	750	2	ENST00000356435.5:c.1452_1453delinsAA	p.Gln485Lys	p.Q485K	ENST00000356435		484	ccCCag/ccAAag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	797	506	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	223	239	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	223	239	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	347	467	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	223	239	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70344171	70344171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	560	304	0	ENST00000374080.3:c.1907C>T	p.Pro636Leu	p.P636L	ENST00000374080		636	cCc/cTc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76890167	76890167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010636-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	797	355	0	ENST00000373344.5:c.4727G>T	p.Cys1576Phe	p.C1576F	ENST00000373344	NM_000489.3	1576	tGt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7573996	7573996	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	86	787	0	ENST00000269305.4:c.1031T>C	p.Leu344Pro	p.L344P	ENST00000269305	NM_001126112.2	344	cTg/cCg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	55	394	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	69	406	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66242725	66242725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	86	419	0	ENST00000273854.3:c.1847G>A	p.Ser616Asn	p.S616N	ENST00000273854	NM_004439.5	616	aGc/aAc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116340214	116340214	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201274041		P-0011066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	90	370	0	ENST00000397752.3:c.1076G>A	p.Arg359Gln	p.R359Q	ENST00000397752	NM_000245.2	359	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579353	7579366	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CCAGACGGAAACCG	CCAGACGGAAACCG	-			P-0014624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			529	486	676	0	ENST00000269305.4:c.321_334del	p.Tyr107Ter	p.Y107*	ENST00000269305	NM_001126112.2	107	taCGGTTTCCGTCTGGgc/tagc					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45655159	45655159	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	82	312	0	ENST00000407780.3:c.693G>C	p.Gln231His	p.Q231H	ENST00000407780	NM_001283052.1	231	caG/caC					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102195279	102195279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014624-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			688	127	396	0	ENST00000263464.3:c.39G>C	p.Leu13Phe	p.L13F	ENST00000263464	NM_001165.4	13	ttG/ttC					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	72	384	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	42	344	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	79	376	0	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45003799	45003799	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	48	493	0	ENST00000558401.1:c.55G>T	p.Glu19Ter	p.E19*	ENST00000558401	NM_004048.2	19	Gag/Tag					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11174917	11174917	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	86	581	0	ENST00000361445.4:c.7117G>T	p.Glu2373Ter	p.E2373*	ENST00000361445	NM_004958.3	2373	Gag/Tag					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180053120	180053120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	78	533	0	ENST00000261937.6:c.1249G>T	p.Val417Leu	p.V417L	ENST00000261937	NM_182925.4	417	Gtg/Ttg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509951	106509951	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	54	584	1	ENST00000359195.3:c.1945G>T	p.Glu649Ter	p.E649*	ENST00000359195	NM_002649.2	649	Gag/Tag					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140434518	140434518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	39	405	0	ENST00000288602.6:c.2180G>C	p.Ser727Thr	p.S727T	ENST00000288602	NM_004333.4	727	aGt/aCt					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625152	69625152	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	55	573	0	ENST00000334134.2:c.641A>G	p.Lys214Arg	p.K214R	ENST00000334134	NM_005247.2	214	aAg/aGg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29007958	29007959	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	CA	CA	AT			P-0010601-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	38	356	0	ENST00000282397.4:c.810_811delinsAT	p.Asp270_Glu271delinsGluTer	p.D270_E271delinsE*	ENST00000282397	NM_002019.4	270	gaTGaa/gaATaa					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110434839	110434839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012411-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	35	544	0	ENST00000375856.3:c.3562G>A	p.Gly1188Ser	p.G1188S	ENST00000375856	NM_003749.2	1188	Ggc/Agc					NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55593618	55593662	+	inframe_deletion	In_Frame_Del	DEL	GAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTT	GAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTT	-			P-0012411-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	262	626	0	ENST00000288135.5:c.1684_1728del	p.Glu562_Leu576del	p.E562_L576del	ENST00000288135	NM_000222.2	562	GAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTT/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	51	589	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	26	506	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0013220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	20	256	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0013220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	20	256	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0013220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	20	256	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
PTPRS	5802	MSKCC	GRCh37	19	5212230	5212230	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs367918810		P-0013220-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	39	587	0	ENST00000357368.4:c.4801G>A	p.Val1601Ile	p.V1601I	ENST00000357368	NM_002850.3	1601	Gtc/Atc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	21	617	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	25	543	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111856469	111856469	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014140-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	46	664	1	ENST00000341259.2:c.520G>A	p.Ala174Thr	p.A174T	ENST00000341259	NM_005475.2	174	Gcc/Acc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16259949	16259949	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	315	649	0	ENST00000375759.3:c.7214T>G	p.Ile2405Ser	p.I2405S	ENST00000375759	NM_015001.2	2405	aTt/aGt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100912716	100912716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1343	105	821	3	ENST00000325455.5:c.2606G>A	p.Arg869His	p.R869H	ENST00000325455	NM_001202474.3	869	cGt/cAt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42054533	42054533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1321	81	717	0	ENST00000219905.7:c.7717C>T	p.Leu2573Phe	p.L2573F	ENST00000219905	NM_001164273.1	2573	Ctt/Ttt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220439	1220439	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	305	752	0	ENST00000326873.7:c.532A>T	p.Lys178Ter	p.K178*	ENST00000326873	NM_000455.4	178	Aag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610574	10610610	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAGGGCGTCACCTCCGCCTTGCACTCAGTGGAGGC	GGGAGGGCGTCACCTCCGCCTTGCACTCAGTGGAGGC	-			P-0013301-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	121	567	0	ENST00000171111.5:c.100_136delGCCTCCACTGAGTGCAAGGCGGAGGTGACGCCCTCCC	p.Ala34SerfsTer22	p.A34Sfs*22	ENST00000171111	NM_203500.1	34	GCCTCCACTGAGTGCAAGGCGGAGGTGACGCCCTCCCag/ag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			290	563	653	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175651	112175651	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			233	447	363	0	ENST00000257430.4:c.4364delA	p.Asn1455IlefsTer18	p.N1455Ifs*18	ENST00000257430	NM_000038.5	1454	Aaa/aa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41400170	41400170	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1676	225	553	0	ENST00000373198.4:c.589C>T	p.Arg197Ter	p.R197*	ENST00000373198	NM_133170.3	197	Cga/Tga					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101257	27101257	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	663	535	0	ENST00000324856.7:c.4539del	p.Ser1513ArgfsTer14	p.S1513Rfs*14	ENST00000324856	NM_006015.4	1513	agC/ag					NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30129465	30129465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	341	559	0	ENST00000263025.4:c.563C>T	p.Ala188Val	p.A188V	ENST00000263025	NM_002746.2	188	gCc/gTc					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50909518	50909518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1170	114	658	5	ENST00000440232.2:c.1322C>T	p.Thr441Met	p.T441M	ENST00000440232	NM_002691.3	441	aCg/aTg					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	142949984	142949984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	227	508	0	ENST00000262992.4:c.2726C>G	p.Pro909Arg	p.P909R	ENST00000262992	NM_001101669.1	909	cCc/cGc					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056059	26056059	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014848-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	230	275	0	ENST00000343677.2:c.598C>A	p.Pro200Thr	p.P200T	ENST00000343677	NM_005319.3	200	Ccc/Acc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	298	641	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55210075	55210075	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			798	322	612	0	ENST00000275493.2:c.185T>G	p.Leu62Arg	p.L62R	ENST00000275493	NM_005228.3	62	cTt/cGt					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729606	41729606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	183	461	0	ENST00000242208.4:c.923G>A	p.Arg308His	p.R308H	ENST00000242208	NM_002192.2	308	cGt/cAt					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65325807	65325807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	175	495	0	ENST00000342505.4:c.1315G>C	p.Gly439Arg	p.G439R	ENST00000342505	NM_002227.2	439	Ggc/Cgc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578483	7578483	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014878-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	472	1046	1	ENST00000269305.4:c.447del	p.Thr150HisfsTer20	p.T150Hfs*20	ENST00000269305	NM_001126112.2	149	tcC/tc					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0010712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	57	410	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	843	409	2	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	244	396	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	160	405	0	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99204054	99204054	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs76257041		P-0010712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	34	350	0	ENST00000074304.5:c.2917G>A	p.Gly973Arg	p.G973R	ENST00000074304	NM_001134224.1	973	Gga/Aga					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81388068	81388068	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	70	429	0	ENST00000222390.5:c.307A>T	p.Ser103Cys	p.S103C	ENST00000222390	NM_000601.4	103	Agc/Tgc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8500854	8500854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	37	372	0	ENST00000356435.5:c.2028G>T	p.Gln676His	p.Q676H	ENST00000356435		676	caG/caT					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43615038	43615038	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	64	365	0	ENST00000355710.3:c.2452G>C	p.Glu818Gln	p.E818Q	ENST00000355710	NM_020975.4	818	Gag/Cag					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105238779	105238779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	174	302	0	ENST00000349310.3:c.1183G>A	p.Gly395Ser	p.G395S	ENST00000349310	NM_001014432.1	395	Ggc/Agc					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45651308	45651308	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	92	477	0	ENST00000407780.3:c.717A>T	p.Arg239Ser	p.R239S	ENST00000407780	NM_001283052.1	239	agA/agT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	167	521	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67590380	67590380	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	113	345	2	ENST00000274335.5:c.1442G>T	p.Arg481Met	p.R481M	ENST00000274335		481	aGg/aTg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220579	1220579	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	190	530	0	ENST00000326873.7:c.598-1G>T		p.X200_splice	ENST00000326873	NM_000455.4	200						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600415	10600415	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013672-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1032	110	747	0	ENST00000171111.5:c.1440del	p.Thr481GlnfsTer19	p.T481Qfs*19	ENST00000171111	NM_203500.1	480	ggG/gg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1683	315	482	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	724	469	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579435	7579441	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCGCC	GGCCGCC	-			P-0012782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	300	451	0	ENST00000269305.4:c.246_252del	p.Ala83LeufsTer38	p.A83Lfs*38	ENST00000269305	NM_001126112.2	82	ccGGCGGCC/cc					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			487	266	673	0	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577102	7577102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			93	733	839	0	ENST00000269305.4:c.836G>A	p.Gly279Glu	p.G279E	ENST00000269305	NM_001126112.2	279	gGg/gAg					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29107973	29107973	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	266	578	0	ENST00000328354.6:c.716A>G	p.Glu239Gly	p.E239G	ENST00000328354	NM_007194.3	239	gAg/gGg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178947166	178947166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014426-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			187	340	350	0	ENST00000263967.3:c.2602G>A	p.Gly868Ser	p.G868S	ENST00000263967	NM_006218.2	868	Ggt/Agt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	11	432	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0012118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	26	760	0	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141525	11141525	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	29	562	1	ENST00000344626.4:c.3502G>A	p.Ala1168Thr	p.A1168T	ENST00000344626	NM_003072.3	1168	Gca/Aca					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573577	48573577	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			71	12	417	0	ENST00000342988.3:c.161T>C	p.Leu54Ser	p.L54S	ENST00000342988	NM_005359.5	54	tTg/tCg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76890161	76890161	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012118-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	19	429	1	ENST00000373344.5:c.4733C>T	p.Ser1578Phe	p.S1578F	ENST00000373344	NM_000489.3	1578	tCt/tTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	144	568	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372337	55372337	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	116	801	0	ENST00000297316.4:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000297316	NM_022454.3	343	Cgg/Tgg					NEWRECORD																																																																									
MAP3K1	4214	MSKCC	GRCh37	5	56155721	56155722	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0014375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	154	395	0	ENST00000399503.3:c.816_817del	p.Arg273SerfsTer27	p.R273Sfs*27	ENST00000399503	NM_005921.1	271	agAAaa/agaa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56189455	56189455	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	149	547	0	ENST00000399503.3:c.4487G>C	p.Arg1496Thr	p.R1496T	ENST00000399503	NM_005921.1	1496	aGa/aCa					NEWRECORD																																																																									
WHSC1L1	0	MSKCC	GRCh37	8	38189047	38189047	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014375-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			892	175	770	0	ENST00000317025.8:c.967C>A	p.His323Asn	p.H323N	ENST00000317025	NM_023034.1	323	Cat/Aat					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	168	636	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108153550	108153554	+	frameshift_variant	Frame_Shift_Del	DEL	CTTAT	CTTAT	-			P-0014481-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			368	86	356	0	ENST00000278616.4:c.3693_3697del	p.Leu1231PhefsTer13	p.L1231Ffs*13	ENST00000278616	NM_000051.3	1230	aaCTTATct/aact					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33792642	33792642	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	39	76	0	ENST00000498907.2:c.679C>T	p.Pro227Ser	p.P227S	ENST00000498907	NM_004364.3	227	Ccg/Tcg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9560851	9560851	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010338-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1320	356	661	0	ENST00000353224.5:c.931C>A	p.His311Asn	p.H311N	ENST00000353224	NM_177990.2	311	Cac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			56	666	612	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54945543	54945543	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1053	517	796	0	ENST00000312783.6:c.1027C>T	p.Arg343Trp	p.R343W	ENST00000312783	NM_198436.1	343	Cgg/Tgg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142274923	142274923	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014004-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	438	572	0	ENST00000350721.4:c.2137C>T	p.Gln713Ter	p.Q713*	ENST00000350721	NM_001184.3	713	Caa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	124	576	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	38	459	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715983	52715983	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			783	71	572	1	ENST00000322088.6:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000322088	NM_014225.5	183	cGg/cAg					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	31	653	1	ENST00000311189.7:c.38G>T	p.Gly13Val	p.G13V	ENST00000311189		13	gGt/gTt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014797-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	36	569	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	162	640	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	199	548	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	92	513	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32170088	32170088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	169	542	0	ENST00000375023.3:c.3520G>A	p.Gly1174Arg	p.G1174R	ENST00000375023	NM_004557.3	1174	Gga/Aga					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108117798	108117798	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138398778		P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	119	617	1	ENST00000278616.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000278616	NM_000051.3	337	Cgt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175232	112175232	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	199	330	0	ENST00000257430.4:c.3942del	p.Arg1314SerfsTer7	p.R1314Sfs*7	ENST00000257430	NM_000038.5	1314	aGg/ag					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118166105	118166105	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1103	81	696	1	ENST00000369448.3:c.615C>A	p.His205Gln	p.H205Q	ENST00000369448	NM_017709.3	205	caC/caA					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610030	81610030	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	56	443	0	ENST00000298171.2:c.1628T>C	p.Val543Ala	p.V543A	ENST00000298171	NM_000369.2	543	gTt/gCt					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48651643	48651643	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1533	515	990	0	ENST00000376670.3:c.809G>A	p.Arg270Gln	p.R270Q	ENST00000376670	NM_002049.3	270	cGg/cAg					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153244185	153244185	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	260	555	0	ENST00000281708.4:c.1972C>T	p.Arg658Ter	p.R658*	ENST00000281708	NM_033632.3	658	Cga/Tga					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0010968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	610	439	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112170652	112170652	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	129	339	1	ENST00000257430.4:c.1748C>A	p.Ser583Ter	p.S583*	ENST00000257430	NM_000038.5	583	tCa/tAa					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128845125	128845125	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	234	537	0	ENST00000249373.3:c.619T>G	p.Tyr207Asp	p.Y207D	ENST00000249373	NM_005631.4	207	Tac/Gac					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175749	112175753	+	frameshift_variant	Frame_Shift_Del	DEL	TACTT	TACTT	-			P-0010968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	114	281	0	ENST00000257430.4:c.4460_4464del	p.Thr1487IlefsTer25	p.T1487Ifs*25	ENST00000257430	NM_000038.5	1486	gaTACTTta/gata					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	45	367	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061261	38061264	+	missense_variant	Missense_Mutation	ONP	TAGG	TAGG	GAGC			P-0010296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	106	637	0	ENST00000250448.2:c.725_728delinsGCTC	p.Ser242_Tyr243delinsCysSer	p.S242_Y243delinsCS	ENST00000250448	NM_004496.3	242	tCCTAc/tGCTCc					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101891298	101891298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	25	283	0	ENST00000374994.4:c.259G>A	p.Ala87Thr	p.A87T	ENST00000374994	NM_004612.2	87	Gca/Aca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578454	7578454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	63	223	0	ENST00000269305.4:c.476C>T	p.Ala159Val	p.A159V	ENST00000269305	NM_001126112.2	159	gCc/gTc					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25523012	25523012	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	124	468	0	ENST00000264709.3:c.173C>T	p.Pro58Leu	p.P58L	ENST00000264709	NM_175629.2	58	cCc/cTc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86676378	86676379	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0010467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	42	280	0	ENST00000274376.6:c.2656_2657del	p.Pro886TyrfsTer11	p.P886Yfs*11	ENST00000274376	NM_002890.2	886	CCt/t					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29676164	29676167	+	frameshift_variant	Frame_Shift_Del	DEL	GTTG	GTTG	TTT			P-0010467-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	61	172	0	ENST00000358273.4:c.7216_7219delinsTTT	p.Val2406PhefsTer12	p.V2406Ffs*12	ENST00000358273	NM_001042492.2	2406	GTTGca/TTTca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577152	7577154	+	inframe_deletion,splice_region_variant	In_Frame_Del	DEL	ACC	ACC	-			P-0014935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	567	622	0	ENST00000269305.4:c.784_786delGGT	p.Gly262del	p.G262del	ENST00000269305	NM_001126112.2	262	GGT/-					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134967353	134967353	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0014935-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	249	494	0	ENST00000398015.3:c.2690+2T>G		p.X897_splice	ENST00000398015	NM_004441.4	897						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0013531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	205	521	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	73	499	0	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041244	47041244	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	205	415	0	ENST00000329236.7:c.1438C>T	p.Gln480Ter	p.Q480*	ENST00000329236	NM_001204466.1	480	Cag/Tag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	218	491	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	150	856	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1293937	1293937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	92	558	0	ENST00000310581.5:c.1064C>G	p.Thr355Ser	p.T355S	ENST00000310581	NM_198253.2	355	aCt/aGt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151860908	151860908	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007834-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			156	87	138	0	ENST00000262189.6:c.9754C>T	p.Arg3252Cys	p.R3252C	ENST00000262189	NM_170606.2	3252	Cgt/Tgt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11184559	11184559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007834-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			516	78	512	0	ENST00000361445.4:c.6658C>T	p.Leu2220Phe	p.L2220F	ENST00000361445	NM_004958.3	2220	Ctc/Ttc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183782	10183782	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007834-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			150	120	318	0	ENST00000256474.2:c.251T>A	p.Val84Glu	p.V84E	ENST00000256474	NM_000551.3	84	gTg/gAg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52676063	52676063	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0007834-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			107	101	255	0	ENST00000394830.3:c.996-2A>G		p.X332_splice	ENST00000394830	NM_018313.4	332						NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2226093	2226093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007834-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			438	189	642	0	ENST00000326181.6:c.1790G>T	p.Gly597Val	p.G597V	ENST00000326181	NM_032271.2	597	gGc/gTc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333664	70333664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0007834-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			507	35	502	0	ENST00000373644.4:c.1569del	p.Phe524SerfsTer7	p.F524Sfs*7	ENST00000373644	NM_030625.2	523	ctC/ct					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68857503	68857504	+	missense_variant	Missense_Mutation	DNP	TT	TT	AC			P-0007834-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			273	108	333	0	ENST00000261769.5:c.2138_2139delinsAC	p.Ile713Asn	p.I713N	ENST00000261769	NM_004360.3	713	aTT/aAC					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	41	297	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2227019	2227019	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012631-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	20	206	0	ENST00000398665.3:c.4499C>G	p.Ser1500Cys	p.S1500C	ENST00000398665	NM_032482.2	1500	tCt/tGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	156	571	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	96	411	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48581229	48581229	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	96	452	0	ENST00000342988.3:c.533C>G	p.Ser178Ter	p.S178*	ENST00000342988	NM_005359.5	178	tCa/tGa					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009019-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			592	111	358	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009019-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			403	164	317	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37687457	37687457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009019-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			438	159	320	0	ENST00000447079.4:c.4361G>A	p.Gly1454Glu	p.G1454E	ENST00000447079	NM_015083.1	1454	gGa/gAa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112111408	112111411	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	75	607	0	ENST00000257430.4:c.509_512del	p.Asp170ValfsTer4	p.D170Vfs*4	ENST00000257430	NM_000038.5	169	ATAGat/at					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858738	9858738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149698593		P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	61	747	2	ENST00000330684.3:c.2663C>T	p.Thr888Met	p.T888M	ENST00000330684	NM_001134407.1	888	aCg/aTg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27092823	27092823	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	96	970	0	ENST00000324856.7:c.2844T>A	p.Tyr948Ter	p.Y948*	ENST00000324856	NM_006015.4	948	taT/taA					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101195	27101195	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	98	889	1	ENST00000324856.7:c.4477C>T	p.Gln1493Ter	p.Q1493*	ENST00000324856	NM_006015.4	1493	Cag/Tag					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134967254	134967254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	56	796	2	ENST00000398015.3:c.2593C>T	p.Arg865Trp	p.R865W	ENST00000398015	NM_004441.4	865	Cgg/Tgg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187541295	187541295	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	123	936	1	ENST00000441802.2:c.6445G>T	p.Glu2149Ter	p.E2149*	ENST00000441802	NM_005245.3	2149	Gaa/Taa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117711006	117711006	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	36	284	0	ENST00000368508.3:c.1266T>A	p.Tyr422Ter	p.Y422*	ENST00000368508	NM_002944.2	422	taT/taA					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40730874	40730874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	109	825	0	ENST00000373198.4:c.3661A>G	p.Asn1221Asp	p.N1221D	ENST00000373198	NM_133170.3	1221	Aac/Gac					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618346	37618346	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	90	820	2	ENST00000447079.4:c.26del	p.Gly9AlafsTer48	p.G9Afs*48	ENST00000447079	NM_015083.1	8	Ggg/gg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120236	70120239	+	frameshift_variant	Frame_Shift_Del	DEL	ACTC	ACTC	TGA			P-0011258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	338	937	0	ENST00000245479.2:c.1238_1241delinsTGA	p.His413LeufsTer57	p.H413Lfs*57	ENST00000245479	NM_000346.3	413	cACTCg/cTGAg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0014266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			686	182	509	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0014266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	239	554	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
WHSC1	0	MSKCC	GRCh37	4	1952921	1952921	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	160	460	2	ENST00000382891.5:c.2004T>A	p.Tyr668Ter	p.Y668*	ENST00000382891	NM_133335.3	668	taT/taA					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70357646	70357646	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014266-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	274	805	1	ENST00000374080.3:c.5897C>A	p.Pro1966His	p.P1966H	ENST00000374080		1966	cCc/cAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40770587	40770587	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	220	460	0	ENST00000373198.4:c.2795G>A	p.Arg932His	p.R932H	ENST00000373198	NM_133170.3	932	cGc/cAc					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190656579	190656589	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAGATCATC	CTCAGATCATC	-			P-0013864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	218	490	0	ENST00000441310.2:c.44_54del	p.Ser15TyrfsTer12	p.S15Yfs*12	ENST00000441310	NM_000534.4	15	tCTCAGATCATC/t					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187539071	187539071	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013864-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1172	278	681	0	ENST00000441802.2:c.8669C>G	p.Ser2890Ter	p.S2890*	ENST00000441802	NM_005245.3	2890	tCa/tGa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	70	470	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604778	48604778	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	41	553	0	ENST00000342988.3:c.1600C>T	p.Gln534Ter	p.Q534*	ENST00000342988	NM_005359.5	534	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	115	395	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33						NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28626704	28626704	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144349858		P-0012133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	41	461	0	ENST00000241453.7:c.592C>T	p.Leu198Phe	p.L198F	ENST00000241453	NM_004119.2	198	Ctt/Ttt					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12038923	12038923	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0009746-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			853	104	511	0	ENST00000396373.4:c.1216A>T	p.Ile406Phe	p.I406F	ENST00000396373	NM_001987.4	406	Att/Ttt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	99	945	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2226132	2226132	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	309	1216	1	ENST00000326181.6:c.1829C>T	p.Thr610Met	p.T610M	ENST00000326181	NM_032271.2	610	aCg/aTg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174058	112174058	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	37	589	0	ENST00000257430.4:c.2767A>T	p.Arg923Ter	p.R923*	ENST00000257430	NM_000038.5	923	Aga/Tga					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16259061	16259061	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	74	909	0	ENST00000375759.3:c.6326C>A	p.Ala2109Glu	p.A2109E	ENST00000375759	NM_015001.2	2109	gCa/gAa					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89346357	89346357	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			331	53	596	3	ENST00000301030.4:c.6593G>A	p.Arg2198Gln	p.R2198Q	ENST00000301030	NM_001256183.1	2198	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7572927	7572927	+	stop_lost	Nonstop_Mutation	SNP	T	T	C			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	112	746	0	ENST00000269305.4:c.1182A>G	p.Ter394TrpextTer9	p.*394Wext*9	ENST00000269305	NM_001126112.2	394	tgA/tgG					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37059058	37059058	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			548	60	1118	0	ENST00000231790.2:c.852G>T	p.Leu284Phe	p.L284F	ENST00000231790	NM_000249.3	284	ttG/ttT					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175628	112175634	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAAAC	CTCAAAC	-			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	159	761	0	ENST00000257430.4:c.4338_4344del	p.Gln1447SerfsTer24	p.Q1447Sfs*24	ENST00000257430	NM_000038.5	1446	gCTCAAACc/gc					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128843306	128843306	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014596-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			692	93	1328	1	ENST00000249373.3:c.413G>A	p.Arg138Gln	p.R138Q	ENST00000249373	NM_005631.4	138	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0014437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	95	590	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	10	270	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16199382	16199382	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	34	457	0	ENST00000375759.3:c.155A>G	p.Asp52Gly	p.D52G	ENST00000375759	NM_015001.2	52	gAt/gGt					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227663239	227663240	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0014437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	67	589	0	ENST00000305123.5:c.215_216delinsAA	p.Ile72Lys	p.I72K	ENST00000305123	NM_005544.2	72	aTC/aAA					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32164142	32164149	+	frameshift_variant	Frame_Shift_Del	DEL	GCGAGCGG	GCGAGCGG	-			P-0014437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	82	483	0	ENST00000375023.3:c.5250_5257del	p.Arg1751SerfsTer7	p.R1751Sfs*7	ENST00000375023	NM_004557.3	1750	gcCCGCTCGCtt/gctt					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53246447	53246447	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014437-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	52	651	1	ENST00000375401.3:c.535C>T	p.Arg179Cys	p.R179C	ENST00000375401	NM_004187.3	179	Cgt/Tgt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68847305	68847305	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	133	651	1	ENST00000261769.5:c.1227G>A	p.Trp409Ter	p.W409*	ENST00000261769	NM_004360.3	409	tgG/tgA					NEWRECORD																																																																									
ARID1A	8289	MSKCC	GRCh37	1	27107136	27107137	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	66	375	0	ENST00000324856.7:c.6749_6750del	p.Glu2250ValfsTer27	p.E2250Vfs*27	ENST00000324856	NM_006015.4	2249	tcAGag/tcag					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7984487	7984487	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	77	608	0	ENST00000319144.4:c.371A>C	p.Asp124Ala	p.D124A	ENST00000319144	NM_001139.2	124	gAc/gCc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0006607-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			888	17	420	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	66	195	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0011510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	77	303	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175411	112175411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	100	323	0	ENST00000257430.4:c.4120G>T	p.Glu1374Ter	p.E1374*	ENST00000257430	NM_000038.5	1374	Gaa/Taa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577090	7577090	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	141	584	0	ENST00000269305.4:c.848G>C	p.Arg283Pro	p.R283P	ENST00000269305	NM_001126112.2	283	cGc/cCc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378647	25378647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	318	370	0	ENST00000256078.4:c.351A>T	p.Lys117Asn	p.K117N	ENST00000256078	NM_033360.2	117	aaA/aaT					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164680	36164684	+	frameshift_variant	Frame_Shift_Del	DEL	TGGCT	TGGCT	-			P-0011510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	136	527	0	ENST00000300305.3:c.1191_1195del	p.Ala398LeufsTer200	p.A398Lfs*200	ENST00000300305		397	caAGCCAgc/cagc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52595901	52595901	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	93	596	0	ENST00000394830.3:c.4014del	p.Ser1338ArgfsTer4	p.S1338Rfs*4	ENST00000394830	NM_018313.4	1338	agC/ag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47205333	47205352	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGATACTTACTCAGGGGTC	CTGATACTTACTCAGGGGTC	-			P-0011560-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	167	421	0	ENST00000409792.3:c.63_71+11del		p.X21_splice	ENST00000409792	NM_014159.6	21						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	174	479	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26031973	26031973	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1280	778	1432	1	ENST00000244661.2:c.316G>A	p.Glu106Lys	p.E106K	ENST00000244661	NM_003537.3	106	Gag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101006	27101006	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	404	667	0	ENST00000324856.7:c.4288C>T	p.Gln1430Ter	p.Q1430*	ENST00000324856	NM_006015.4	1430	Cag/Tag					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442069	52442069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	284	458	0	ENST00000460680.1:c.280C>G	p.His94Asp	p.H94D	ENST00000460680	NM_004656.3	94	Cat/Gat					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135771801	135771801	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	450	942	0	ENST00000298552.3:c.3316G>A	p.Glu1106Lys	p.E1106K	ENST00000298552	NM_001162426.1	1106	Gag/Aag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9923324	9923324	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	224	613	0	ENST00000330684.3:c.1963C>A	p.Gln655Lys	p.Q655K	ENST00000330684	NM_001134407.1	655	Caa/Aaa					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876449	35876449	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs2229232		P-0012267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	78	379	1	ENST00000303115.3:c.1241C>T	p.Thr414Met	p.T414M	ENST00000303115	NM_002185.3	414	aCg/aTg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188320	10188320	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	177	397	0	ENST00000256474.2:c.463G>T	p.Val155Leu	p.V155L	ENST00000256474	NM_000551.3	155	Gtg/Ttg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11174459	11174459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	38	452	0	ENST00000361445.4:c.7216G>A	p.Val2406Met	p.V2406M	ENST00000361445	NM_004958.3	2406	Gtg/Atg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2978314	2978314	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0012267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	41	338	0	ENST00000396946.4:c.1016A>T	p.Lys339Met	p.K339M	ENST00000396946	NM_032415.4	339	aAg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	223	630	2	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012197-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			293	430	586	3	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060930	38060960	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGGAGTCTTCAACTCCGAGGCGCCCCCT	GGCTGGAGTCTTCAACTCCGAGGCGCCCCCT	-			P-0012197-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			419	65	381	0	ENST00000250448.2:c.1029_1059del	p.Gly344ProfsTer7	p.G344Pfs*7	ENST00000250448	NM_004496.3	343	acAGGGGGCGCCTCGGAGTTGAAGACTCCAGCC/ac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	171	221	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	213	386	0	ENST00000269305.4:c.659A>C	p.Tyr220Ser	p.Y220S	ENST00000269305	NM_001126112.2	220	tAt/tCt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045866	47045879	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACACAGGCCCAAA	CACACAGGCCCAAA	-			P-0011535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	156	312	0	ENST00000329236.7:c.2434-4_2443del		p.X812_splice	ENST00000329236	NM_001204466.1	812						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579556	7579557	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0010523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	158	389	0	ENST00000269305.4:c.130_131del	p.Met44AlafsTer7	p.M44Afs*7	ENST00000269305	NM_001126112.2	44	ATg/g					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	96	402	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209108325	209108325	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	62	349	1	ENST00000345146.2:c.524G>T	p.Gly175Val	p.G175V	ENST00000345146	NM_005896.2	175	gGt/gTt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220388	1220388	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	190	579	0	ENST00000326873.7:c.481A>T	p.Ile161Phe	p.I161F	ENST00000326873	NM_000455.4	161	Att/Ttt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11135066	11135066	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	69	454	2	ENST00000344626.4:c.3033G>T	p.Met1011Ile	p.M1011I	ENST00000344626	NM_003072.3	1011	atG/atT					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	19	630	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248599	212248599	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	45	828	0	ENST00000342788.4:c.3668A>C	p.Lys1223Thr	p.K1223T	ENST00000342788	NM_005235.2	1223	aAg/aCg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			131	47	455	1	ENST00000269305.4:c.375+1G>A		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	756797	756797	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	21	760	0	ENST00000314574.4:c.31A>C	p.Ser11Arg	p.S11R	ENST00000314574	NM_005433.3	11	Agt/Cgt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604748	48604748	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	93	757	0	ENST00000342988.3:c.1570T>G	p.Trp524Gly	p.W524G	ENST00000342988	NM_005359.5	524	Tgg/Ggg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212426795	212426795	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	29	480	0	ENST00000342788.4:c.2320A>C	p.Ser774Arg	p.S774R	ENST00000342788	NM_005235.2	774	Agt/Cgt					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294441	1294441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	29	383	1	ENST00000310581.5:c.560C>T	p.Pro187Leu	p.P187L	ENST00000310581	NM_198253.2	187	cCg/cTg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120809	94120810	+	missense_variant	Missense_Mutation	DNP	TG	TG	GT			P-0013758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	41	999	2	ENST00000369303.4:c.241_242delinsAC	p.Gln81Thr	p.Q81T	ENST00000369303	NM_004440.3	81	CAa/ACa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	28	527	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	73	517	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21970972	21970972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	53	496	0	ENST00000304494.5:c.386A>G	p.Tyr129Cys	p.Y129C	ENST00000304494	NM_000077.4	129	tAc/tGc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970972	21970972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	53	496	0	ENST00000304494.5:c.386A>G	p.Tyr129Cys	p.Y129C	ENST00000304494	NM_000077.4	129	tAc/tGc					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89882319	89882319	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	86	787	2	ENST00000389301.3:c.155G>A	p.Arg52Gln	p.R52Q	ENST00000389301	NM_000135.2	52	cGa/cAa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8636757	8636757	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	54	579	0	ENST00000356435.5:c.152C>A	p.Pro51Gln	p.P51Q	ENST00000356435		51	cCa/cAa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597417	10597417	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	83	681	0	ENST00000171111.5:c.1786C>T	p.Arg596Ter	p.R596*	ENST00000171111	NM_203500.1	596	Cga/Tga					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44524442	44524442	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	85	524	0	ENST00000291552.4:c.115A>T	p.Lys39Ter	p.K39*	ENST00000291552	NM_006758.2	39	Aaa/Taa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220580	1220584	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GCACT	GCACT	-			P-0011342-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	49	523	0	ENST00000326873.7:c.602_606del	p.Leu201ProfsTer63	p.L201Pfs*63	ENST00000326873	NM_000455.4	200	GCACTg/g					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577075	7577075	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	247	809	0	ENST00000269305.4:c.863delA	p.Asn288IlefsTer57	p.N288Ifs*57	ENST00000269305	NM_001126112.2	288	aAt/at					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175096	112175097	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0013929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	98	399	0	ENST00000257430.4:c.3807_3808delAT	p.Ile1269MetfsTer6	p.I1269Mfs*6	ENST00000257430	NM_000038.5	1269	ATa/a					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30672309	30672309	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	132	926	0	ENST00000376406.3:c.4651C>G	p.Pro1551Ala	p.P1551A	ENST00000376406	NM_014641.2	1551	Ccc/Gcc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508424	106508424	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	30	254	0	ENST00000359195.3:c.418C>T	p.Arg140Trp	p.R140W	ENST00000359195	NM_002649.2	140	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	292	377	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207058	1207069	+	inframe_deletion	In_Frame_Del	DEL	ACCTGATGGGGG	ACCTGATGGGGG	-			P-0010940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	228	406	1	ENST00000326873.7:c.151_162del	p.Met51_Leu54del	p.M51_L54del	ENST00000326873	NM_000455.4	49	tACCTGATGGGGGac/tac					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15383759	15383759	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010940-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1900	263	532	0	ENST00000263377.2:c.152C>G	p.Ser51Cys	p.S51C	ENST00000263377	NM_058243.2	51	tCc/tGc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692849	89692849	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	20	66	0	ENST00000371953.3:c.333G>A	p.Trp111Ter	p.W111*	ENST00000371953	NM_000314.4	111	tgG/tgA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			27	563	247	0	ENST00000269305.4:c.542G>C	p.Arg181Pro	p.R181P	ENST00000269305	NM_001126112.2	181	cGc/cCc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29606697	29606697	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	387	319	0	ENST00000389048.3:c.1183C>T	p.Arg395Cys	p.R395C	ENST00000389048	NM_004304.4	395	Cgt/Tgt					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851892	134851892	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0011404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	320	275	0	ENST00000398015.3:c.1297+1G>A		p.X433_splice	ENST00000398015	NM_004441.4	433						NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	397214	397214	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	444	372	0	ENST00000380956.4:c.599C>A	p.Pro200His	p.P200H	ENST00000380956	NM_001195286.1	200	cCc/cAc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106520022	106520022	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	365	301	1	ENST00000359195.3:c.2450G>A	p.Cys817Tyr	p.C817Y	ENST00000359195	NM_002649.2	817	tGt/tAt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341847	8341847	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	414	420	0	ENST00000356435.5:c.4793C>G	p.Thr1598Arg	p.T1598R	ENST00000356435		1598	aCa/aGa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955394	48955394	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			10	124	120	0	ENST00000267163.4:c.1510C>T	p.Gln504Ter	p.Q504*	ENST00000267163	NM_000321.2	504	Cag/Tag					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3786770	3786770	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	417	456	0	ENST00000262367.5:c.4441G>A	p.Asp1481Asn	p.D1481N	ENST00000262367	NM_004380.2	1481	Gat/Aat					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0014879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			803	247	947	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15841118	15841118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	116	877	1	ENST00000307771.7:c.1202G>A	p.Arg401His	p.R401H	ENST00000307771	NM_005089.3	401	cGt/cAt					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88670415	88670415	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014879-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	89	554	0	ENST00000360948.2:c.1271A>C	p.Lys424Thr	p.K424T	ENST00000360948	NM_001012338.2	424	aAa/aCa					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0000879-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			428	308	345	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0000879-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			318	188	401	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1317437	1317437	+	downstream_gene_variant	3'Flank	SNP	G	G	A			P-0000879-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	715	528	0				ENST00000381566								NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106545564	106545564	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000879-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			575	133	325	0	ENST00000359195.3:c.3041T>C	p.Val1014Ala	p.V1014A	ENST00000359195	NM_002649.2	1014	gTt/gCt					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	101985053	101985053	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000879-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			573	213	421	0	ENST00000282441.5:c.500T>C	p.Ile167Thr	p.I167T	ENST00000282441	NM_001130145.2	167	aTa/aCa					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111885509	111885509	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0000879-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1647	248	646	0	ENST00000341259.2:c.1286T>C	p.Leu429Pro	p.L429P	ENST00000341259	NM_005475.2	429	cTc/cCc					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59761444	59761444	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0000879-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			459	141	428	1	ENST00000259008.2:c.2963C>A	p.Ser988Tyr	p.S988Y	ENST00000259008	NM_032043.2	988	tCc/tAc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	253	537	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30323815	30323815	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0013369-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	183	399	0	ENST00000322652.5:c.1795-2A>T		p.X599_splice	ENST00000322652	NM_015355.2	599						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	443	474	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578224	7578224	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	370	742	1	ENST00000269305.4:c.625A>T	p.Arg209Ter	p.R209*	ENST00000269305	NM_001126112.2	209	Aga/Tga					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45799141	45799141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	217	799	0	ENST00000372115.3:c.250G>T	p.Gly84Trp	p.G84W	ENST00000372115	NM_001048171.1	84	Ggg/Tgg					NEWRECORD																																																																									
MYD88	0	MSKCC	GRCh37	3	38180274	38180274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	509	635	0	ENST00000396334.3:c.122G>C	p.Arg41Pro	p.R41P	ENST00000396334	NM_002468.4	41	cGa/cCa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89468495	89468495	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	58	470	0	ENST00000336596.2:c.2029T>A	p.Phe677Ile	p.F677I	ENST00000336596	NM_005233.5	677	Ttt/Att					NEWRECORD																																																																									
EPHB1	2047	MSKCC	GRCh37	3	134911541	134911541	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	219	620	1	ENST00000398015.3:c.2006C>T	p.Ala669Val	p.A669V	ENST00000398015	NM_004441.4	669	gCg/gTg					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900300	101900300	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	313	693	0	ENST00000374994.4:c.734A>T	p.Glu245Val	p.E245V	ENST00000374994	NM_004612.2	245	gAg/gTg					NEWRECORD																																																																									
MEF2B	0	MSKCC	GRCh37	19	19256608	19256608	+	stop_lost	Nonstop_Mutation	SNP	A	A	G			P-0011208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	83	309	0	ENST00000162023.5:c.1105T>C	p.Ter369GlnextTer?	p.*369Qext*?	ENST00000162023		369	Tag/Cag					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573618	48573701	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTAGTAAATGTGTTACCATACAGAGAACATTGGATGGGAGGCTTCAGGTTAGTCTTATAAGAGTTTTTCTATACCCTCTATGG	CCTAGTAAATGTGTTACCATACAGAGAACATTGGATGGGAGGCTTCAGGTTAGTCTTATAAGAGTTTTTCTATACCCTCTATGG	-			P-0011208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	85	301	0	ENST00000342988.3:c.202_249+36del		p.X68_splice	ENST00000342988	NM_005359.5	68						NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1543	102	467	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	390	407	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	192	293	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	474	533	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8465651	8465651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	228	402	1	ENST00000356435.5:c.3529C>T	p.Arg1177Cys	p.R1177C	ENST00000356435		1177	Cgc/Tgc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52678763	52678763	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	105	426	0	ENST00000394830.3:c.856G>A	p.Glu286Lys	p.E286K	ENST00000394830	NM_018313.4	286	Gaa/Aaa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187549863	187549863	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	110	367	0	ENST00000441802.2:c.4378A>G	p.Lys1460Glu	p.K1460E	ENST00000441802	NM_005245.3	1460	Aag/Gag					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39934183	39934183	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010181-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1339	278	570	1	ENST00000378444.4:c.416G>A	p.Gly139Glu	p.G139E	ENST00000378444	NM_001123385.1	139	gGa/gAa					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	360	604	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89498526	89498526	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0012093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	231	401	2	ENST00000336596.2:c.2496+2T>A		p.X832_splice	ENST00000336596	NM_005233.5	832						NEWRECORD																																																																									
CCND3	0	MSKCC	GRCh37	6	41909232	41909232	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	477	495	0	ENST00000372991.4:c.156C>G	p.Ile52Met	p.I52M	ENST00000372991	NM_001760.3	52	atC/atG					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137525467	137525467	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0012093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	360	464	0	ENST00000367739.4:c.546+2T>A		p.X182_splice	ENST00000367739	NM_000416.2	182						NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372246	55372246	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	144	265	0	ENST00000297316.4:c.936G>T	p.Gln312His	p.Q312H	ENST00000297316	NM_022454.3	312	caG/caT					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118376054	118376054	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	112	600	1	ENST00000534358.1:c.9447C>A	p.Phe3149Leu	p.F3149L	ENST00000534358	NM_005933.3	3149	ttC/ttA					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061193	38061193	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012304-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	35	253	0	ENST00000250448.2:c.796T>C	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	Ttc/Ctc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41537115	41537115	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	246	446	1	ENST00000263253.7:c.1942C>T	p.Arg648Ter	p.R648*	ENST00000263253	NM_001429.3	648	Cga/Tga					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044546	47044546	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013727-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	263	365	0	ENST00000329236.7:c.1809T>G	p.Asp603Glu	p.D603E	ENST00000329236	NM_001204466.1	603	gaT/gaG					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	308	385	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158617459	158617459	+	stop_gained	Nonsense_Mutation	SNP	A	A	C			P-0012105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	646	816	0	ENST00000263640.3:c.1197T>G	p.Tyr399Ter	p.Y399*	ENST00000263640	NM_001105.4	399	taT/taG					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151833936	151833936	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	179	372	0	ENST00000262189.6:c.14717G>C	p.Cys4906Ser	p.C4906S	ENST00000262189	NM_170606.2	4906	tGc/tCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	420	639	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099518	157099518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	266	400	3	ENST00000346085.5:c.455C>T	p.Pro152Leu	p.P152L	ENST00000346085	NM_020732.3	152	cCc/cTc					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43595973	43595973	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	456	667	0	ENST00000355710.3:c.140G>A	p.Gly47Asp	p.G47D	ENST00000355710	NM_020975.4	47	gGc/gAc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42058309	42058309	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012578-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	608	1098	0	ENST00000219905.7:c.8029G>C	p.Asp2677His	p.D2677H	ENST00000219905	NM_001164273.1	2677	Gat/Cat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	31	371	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578527	7578527	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	46	507	0	ENST00000269305.4:c.403delT	p.Cys135AlafsTer35	p.C135Afs*35	ENST00000269305	NM_001126112.2	135	Tgc/gc					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41244157	41244157	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			376	31	468	0	ENST00000357654.3:c.3391G>C	p.Asp1131His	p.D1131H	ENST00000357654	NM_007294.3	1131	Gat/Cat					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141465	11141465	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013083-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	39	596	0	ENST00000344626.4:c.3442G>T	p.Glu1148Ter	p.E1148*	ENST00000344626	NM_003072.3	1148	Gag/Tag					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0012591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	119	395	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720875	89720875	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	84	195	0	ENST00000371953.3:c.1026G>T	p.Lys342Asn	p.K342N	ENST00000371953	NM_000314.4	342	aaG/aaT					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	396	534	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115701	8115704	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	GATT	GATT	A			P-0012591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	119	391	0	ENST00000346208.3:c.1048-1_1050delinsA		p.X350_splice	ENST00000346208		350						NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0011127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	193	291	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574005	7574005	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	398	572	0	ENST00000269305.4:c.1022T>G	p.Phe341Cys	p.F341C	ENST00000269305	NM_001126112.2	341	tTc/tGc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	214	268	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	118	264	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6043374	6043374	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	38	65	0	ENST00000265849.7:c.300G>T	p.Gln100His	p.Q100H	ENST00000265849	NM_000535.5	100	caG/caT					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508442	106508442	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	67	99	0	ENST00000359195.3:c.436G>A	p.Glu146Lys	p.E146K	ENST00000359195	NM_002649.2	146	Gag/Aag					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133738372	133738372	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	107	220	1	ENST00000318560.5:c.772G>T	p.Glu258Ter	p.E258*	ENST00000318560	NM_005157.4	258	Gag/Tag					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123274704	123274704	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	173	348	0	ENST00000358487.5:c.1214A>G	p.Lys405Arg	p.K405R	ENST00000358487	NM_000141.4	405	aAg/aGg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108178712	108178712	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			186	54	128	0	ENST00000278616.4:c.5762+1G>A		p.X1921_splice	ENST00000278616	NM_000051.3	1921						NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119170371	119170371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	176	364	0	ENST00000264033.4:c.2601G>T	p.Gln867His	p.Q867H	ENST00000264033	NM_005188.3	867	caG/caT					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16046996	16046996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	164	284	0	ENST00000268712.3:c.1097G>C	p.Gly366Ala	p.G366A	ENST00000268712	NM_006311.3	366	gGa/gCa					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42794623	42794623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	38	357	0	ENST00000575354.2:c.1703C>T	p.Ala568Val	p.A568V	ENST00000575354	NM_015125.3	568	gCg/gTg					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36252865	36252865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	163	263	0	ENST00000300305.3:c.497G>T	p.Arg166Leu	p.R166L	ENST00000300305		166	cGa/cTa					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53225146	53225146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	212	540	1	ENST00000375401.3:c.3072G>T	p.Glu1024Asp	p.E1024D	ENST00000375401	NM_004187.3	1024	gaG/gaT					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76855939	76855939	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	103	464	0	ENST00000373344.5:c.5661G>T	p.Trp1887Cys	p.W1887C	ENST00000373344	NM_000489.3	1887	tgG/tgT					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76909591	76909591	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	177	493	0	ENST00000373344.5:c.4314C>G	p.Asn1438Lys	p.N1438K	ENST00000373344	NM_000489.3	1438	aaC/aaG					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162864478	162864479	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0011236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	145	317	1	ENST00000366898.1:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000366898	NM_004562.2	12	GGt/TTt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	285	395	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27097610	27097610	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	228	611	1	ENST00000324856.7:c.3199G>T	p.Val1067Phe	p.V1067F	ENST00000324856	NM_006015.4	1067	Gtc/Ttc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5244101	5244101	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	406	1030	1	ENST00000357368.4:c.1381C>T	p.Arg461Cys	p.R461C	ENST00000357368	NM_002850.3	461	Cgc/Tgc					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131939182	131939182	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0014151-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	327	489	0	ENST00000265335.6:c.2397+1G>T		p.X799_splice	ENST00000265335		799						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0011420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	479	239	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952142	178952142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	682	343	1	ENST00000263967.3:c.3197C>T	p.Ala1066Val	p.A1066V	ENST00000263967	NM_006218.2	1066	gCa/gTa					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91346836	91346836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	135	584	0	ENST00000355112.3:c.3444G>T	p.Lys1148Asn	p.K1148N	ENST00000355112	NM_000057.2	1148	aaG/aaT					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12016625	12016625	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011420-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	486	476	0	ENST00000353533.5:c.761T>G	p.Leu254Arg	p.L254R	ENST00000353533	NM_003010.3	254	cTt/cGt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593607	55593612	+	inframe_deletion	In_Frame_Del	DEL	AGGTTG	AGGTTG	-			P-0014241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	326	494	0	ENST00000288135.5:c.1673_1678del	p.Lys558_Val560delinsIle	p.K558_V560delinsI	ENST00000288135	NM_000222.2	558	aAGGTTGtt/att					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163258	32163258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	637	1062	2	ENST00000375023.3:c.5968C>T	p.Leu1990Phe	p.L1990F	ENST00000375023	NM_004557.3	1990	Ctc/Ttc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157527679	157527679	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014241-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	413	600	0	ENST00000346085.5:c.5404C>T	p.Arg1802Ter	p.R1802*	ENST00000346085	NM_020732.3	1802	Cga/Tga					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39593422	39593422	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	39	265	0	ENST00000262039.4:c.1187T>G	p.Leu396Arg	p.L396R	ENST00000262039	NM_002647.2	396	cTa/cGa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593582	55593597	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	AAACCCATGTATGAAG	AAACCCATGTATGAAG	C			P-0013447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	149	518	0	ENST00000288135.5:c.1648_1663delinsC	p.Lys550_Val555delinsLeu	p.K550_V555delinsL	ENST00000288135	NM_000222.2	550	AAACCCATGTATGAAGta/Cta					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	41	463	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579410	7579426	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGCCAGGAGGGGGCT	GGGGCCAGGAGGGGGCT	-			P-0013553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	64	794	0	ENST00000269305.4:c.261_277del	p.Ala88ValfsTer55	p.A88Vfs*55	ENST00000269305	NM_001126112.2	87	ccAGCCCCCTCCTGGCCCCtg/cctg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11113711	11113711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	56	771	0	ENST00000344626.4:c.1819G>T	p.Asp607Tyr	p.D607Y	ENST00000344626	NM_003072.3	607	Gac/Tac					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1801121	1801121	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	54	787	0	ENST00000260795.2:c.250T>G	p.Ser84Ala	p.S84A	ENST00000260795		84	Tcg/Gcg					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13935579	13935579	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	32	526	0	ENST00000405192.2:c.1277C>G	p.Pro426Arg	p.P426R	ENST00000405192	NM_001163147.1	426	cCt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577100	7577100	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	639	705	1	ENST00000269305.4:c.838A>G	p.Arg280Gly	p.R280G	ENST00000269305	NM_001126112.2	280	Aga/Gga					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101904872	101904872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	231	505	0	ENST00000374994.4:c.860C>G	p.Ser287Cys	p.S287C	ENST00000374994	NM_004612.2	287	tCc/tGc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425890	49425890	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	238	625	0	ENST00000301067.7:c.12598C>T	p.Gln4200Ter	p.Q4200*	ENST00000301067	NM_003482.3	4200	Cag/Tag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49426808	49426812	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGC	TGGGC	-			P-0010271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	295	381	0	ENST00000301067.7:c.11676_11680del	p.Gln3892HisfsTer118	p.Q3892Hfs*118	ENST00000301067	NM_003482.3	3892	caGCCCAtg/catg					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21563198	21563198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	379	413	0	ENST00000382592.4:c.721G>A	p.Ala241Thr	p.A241T	ENST00000382592	NM_014572.2	241	Gca/Aca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578505	7578505	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0008127-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			583	93	415	0	ENST00000269305.4:c.425delC	p.Pro142LeufsTer28	p.P142Lfs*28	ENST00000269305	NM_001126112.2	142	cCt/ct					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16086032	16086032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008127-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			700	105	407	1	ENST00000281043.3:c.1208C>T	p.Thr403Met	p.T403M	ENST00000281043	NM_005378.4	403	aCg/aTg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442530	52442530	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0008127-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			515	98	322	0	ENST00000460680.1:c.215T>G	p.Ile72Ser	p.I72S	ENST00000460680	NM_004656.3	72	aTt/aGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578458	7578464	+	frameshift_variant	Frame_Shift_Del	DEL	GGACGCG	GGACGCG	-			P-0008127-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			463	149	351	0	ENST00000269305.4:c.466_472del	p.Arg156AlafsTer12	p.R156Afs*12	ENST00000269305	NM_001126112.2	156	CGCGTCCgc/gc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	98	483	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58677926	58677926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	47	443	0	ENST00000305921.3:c.151C>T	p.Pro51Ser	p.P51S	ENST00000305921	NM_003620.3	51	Ccg/Tcg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108199896	108199896	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	90	493	0	ENST00000278616.4:c.7238A>G	p.Lys2413Arg	p.K2413R	ENST00000278616	NM_000051.3	2413	aAg/aGg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162872	47162872	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	125	590	0	ENST00000409792.3:c.3254del	p.Pro1085LeufsTer36	p.P1085Lfs*36	ENST00000409792	NM_014159.6	1085	cCt/ct					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	112025241	112025241	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	164	755	0	ENST00000368678.4:c.508A>T	p.Arg170Ter	p.R170*	ENST00000368678		170	Aga/Tga					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106300	27106300	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	110	425	0	ENST00000324856.7:c.5911C>G	p.Leu1971Val	p.L1971V	ENST00000324856	NM_006015.4	1971	Ctg/Gtg					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40363602	40363602	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	126	350	0	ENST00000397332.2:c.627G>T	p.Gln209His	p.Q209H	ENST00000397332	NM_001033082.2	209	caG/caT					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46546348	46546348	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	181	595	0	ENST00000262741.5:c.181C>T	p.Gln61Ter	p.Q61*	ENST00000262741	NM_003629.3	61	Cag/Tag					NEWRECORD																																																																									
CENPA	0	MSKCC	GRCh37	2	27015652	27015652	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	118	657	0	ENST00000335756.4:c.239G>T	p.Arg80Leu	p.R80L	ENST00000335756	NM_001809.3	80	cGt/cTt					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29473992	29473992	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	130	414	0	ENST00000389048.3:c.2183T>C	p.Val728Ala	p.V728A	ENST00000389048	NM_004304.4	728	gTg/gCg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29754879	29754879	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	98	329	1	ENST00000389048.3:c.1056C>A	p.His352Gln	p.H352Q	ENST00000389048	NM_004304.4	352	caC/caA					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128051217	128051217	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	126	472	0	ENST00000285398.2:c.106G>T	p.Glu36Ter	p.E36*	ENST00000285398	NM_000122.1	36	Gaa/Taa					NEWRECORD																																																																									
CXCR4	0	MSKCC	GRCh37	2	136873251	136873251	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	159	712	0	ENST00000241393.3:c.247G>T	p.Ala83Ser	p.A83S	ENST00000241393	NM_003467.2	83	Gcc/Tcc					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227663185	227663185	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs3731597		P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	130	471	0	ENST00000305123.5:c.270C>G	p.Asp90Glu	p.D90E	ENST00000305123	NM_005544.2	90	gaC/gaG					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266996	41266996	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	77	513	0	ENST00000349496.5:c.667C>G	p.His223Asp	p.H223D	ENST00000349496	NM_001904.3	223	Cat/Gat					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125317	47125317	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	154	587	0	ENST00000409792.3:c.5953G>T	p.Glu1985Ter	p.E1985*	ENST00000409792	NM_014159.6	1985	Gag/Tag					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106155386	106155386	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	68	420	0	ENST00000380013.4:c.287G>C	p.Arg96Pro	p.R96P	ENST00000380013	NM_001127208.2	96	cGc/cCc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187524465	187524465	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	69	356	0	ENST00000441802.2:c.11215G>C	p.Ala3739Pro	p.A3739P	ENST00000441802	NM_005245.3	3739	Gcg/Ccg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187542753	187542753	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200613891		P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	64	501	0	ENST00000441802.2:c.4987G>A	p.Ala1663Thr	p.A1663T	ENST00000441802	NM_005245.3	1663	Gcc/Acc					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	226091	226091	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	22	195	0	ENST00000264932.6:c.550G>C	p.Gly184Arg	p.G184R	ENST00000264932	NM_004168.2	184	Ggg/Cgg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2983984	2983984	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	150	629	0	ENST00000396946.4:c.546G>C	p.Lys182Asn	p.K182N	ENST00000396946	NM_032415.4	182	aaG/aaC					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55259488	55259488	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	122	323	0	ENST00000275493.2:c.2546A>T	p.Gln849Leu	p.Q849L	ENST00000275493	NM_005228.3	849	cAg/cTg					NEWRECORD																																																																									
CDK6	0	MSKCC	GRCh37	7	92354974	92354974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	236	407	0	ENST00000265734.4:c.503G>C	p.Arg168Pro	p.R168P	ENST00000265734	NM_001259.6	168	cGc/cCc					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5126782	5126782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	149	293	1	ENST00000381652.3:c.3390G>T	p.Met1130Ile	p.M1130I	ENST00000381652	NM_004972.3	1130	atG/atT					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32439182	32439182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	115	386	0	ENST00000332351.3:c.891G>T	p.Met297Ile	p.M297I	ENST00000332351	NM_024426.4	297	atG/atT					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18524218	18524218	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	219	529	0	ENST00000266497.5:c.1730G>C	p.Trp577Ser	p.W577S	ENST00000266497		577	tGg/tCg					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21563021	21563021	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	154	415	0	ENST00000382592.4:c.898G>T	p.Ala300Ser	p.A300S	ENST00000382592	NM_014572.2	300	Gcc/Tcc					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99459339	99459339	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs199672504		P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	197	379	0	ENST00000268035.6:c.1975C>T	p.Arg659Trp	p.R659W	ENST00000268035	NM_000875.3	659	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578254	7578255	+	stop_gained	Nonsense_Mutation	DNP	CT	CT	AA			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	113	500	0	ENST00000269305.4:c.594_595delinsTT	p.Glu198_Gly199delinsAspTer	p.E198_G199delinsD*	ENST00000269305	NM_001126112.2	198	gaAGga/gaTTga					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12013719	12013719	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	91	349	0	ENST00000353533.5:c.661G>T	p.Glu221Ter	p.E221*	ENST00000353533	NM_003010.3	221	Gaa/Taa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15965514	15965514	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	119	470	0	ENST00000268712.3:c.5292G>T	p.Gln1764His	p.Q1764H	ENST00000268712	NM_006311.3	1764	caG/caT					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38511542	38511542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	101	343	0	ENST00000254066.5:c.1040G>C	p.Arg347Pro	p.R347P	ENST00000254066	NM_000964.3	347	cGg/cCg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220504	1220504	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	97	383	0	ENST00000326873.7:c.597G>T	p.Glu199Asp	p.E199D	ENST00000326873	NM_000455.4	199	gaG/gaT					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50902143	50902143	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	130	505	0	ENST00000440232.2:c.35G>A	p.Gly12Glu	p.G12E	ENST00000440232	NM_002691.3	12	gGg/gAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40710559	40710559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	65	374	0	ENST00000373198.4:c.4292C>T	p.Thr1431Ile	p.T1431I	ENST00000373198	NM_133170.3	1431	aCa/aTa					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15833966	15833966	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	68	324	0	ENST00000307771.7:c.724G>C	p.Asp242His	p.D242H	ENST00000307771	NM_005089.3	242	Gat/Cat					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47430346	47430346	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	73	615	0	ENST00000377045.4:c.1621G>T	p.Ala541Ser	p.A541S	ENST00000377045	NM_001654.4	541	Gcc/Tcc					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81554355	81554355	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	70	555	0	ENST00000298171.2:c.379del	p.Leu127SerfsTer2	p.L127Sfs*2	ENST00000298171	NM_000369.2	125	ctC/ct					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88576185	88576185	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	54	349	0	ENST00000360948.2:c.1488del	p.Asp499ThrfsTer7	p.D499Tfs*7	ENST00000360948	NM_001012338.2	496	gcC/gc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098363	11098363	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	121	436	0	ENST00000344626.4:c.885del	p.Thr296ArgfsTer7	p.T296Rfs*7	ENST00000344626	NM_003072.3	294	gCc/gc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			53	164	215	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0010495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	306	365	1	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711900	89711900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	365	442	0	ENST00000371953.3:c.518G>A	p.Arg173His	p.R173H	ENST00000371953	NM_000314.4	173	cGc/cAc					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56174838	56174838	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	161	356	1	ENST00000399503.3:c.1997C>T	p.Pro666Leu	p.P666L	ENST00000399503	NM_005921.1	666	cCt/cTt					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112631	115112631	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010495-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			36	171	158	0	ENST00000257566.3:c.1109C>T	p.Pro370Leu	p.P370L	ENST00000257566	NM_016569.3	370	cCc/cTc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0010557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	362	360	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138665422	138665422	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	198	193	0	ENST00000330315.3:c.143A>T	p.Lys48Met	p.K48M	ENST00000330315	NM_023067.3	48	aAg/aTg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89871754	89871754	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	327	315	0	ENST00000389301.3:c.643T>G	p.Cys215Gly	p.C215G	ENST00000389301	NM_000135.2	215	Tgc/Ggc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220506	1220506	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	191	251	0	ENST00000326873.7:c.597+2T>C		p.X199_splice	ENST00000326873	NM_000455.4	199						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610265	10610265	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010557-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	393	415	0	ENST00000171111.5:c.445G>C	p.Glu149Gln	p.E149Q	ENST00000171111	NM_203500.1	149	Gag/Cag					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152129487	152129487	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	35	94	0	ENST00000206249.3:c.440C>A	p.Pro147Gln	p.P147Q	ENST00000206249	NM_000125.3	147	cCg/cAg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32971075	32971075	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	118	403	0	ENST00000380152.3:c.9542T>C	p.Met3181Thr	p.M3181T	ENST00000380152		3181	aTg/aCg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11152104	11152104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	261	405	0	ENST00000344626.4:c.4292G>A	p.Arg1431His	p.R1431H	ENST00000344626	NM_003072.3	1431	cGc/cAc					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20156686	20156686	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	153	672	0	ENST00000379607.5:c.71G>C	p.Arg24Thr	p.R24T	ENST00000379607	NM_001412.3	24	aGa/aCa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188272	10188275	+	frameshift_variant	Frame_Shift_Del	DEL	TCTC	TCTC	CTT			P-0014291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	220	758	2	ENST00000256474.2:c.415_418delinsCTT	p.Ser139LeufsTer20	p.S139Lfs*20	ENST00000256474	NM_000551.3	139	TCTCtc/CTTtc					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138426026	138426026	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014291-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	119	473	0	ENST00000289153.2:c.1505C>T	p.Pro502Leu	p.P502L	ENST00000289153	NM_006219.2	502	cCt/cTt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593601	55593606	+	inframe_deletion	In_Frame_Del	DEL	AGTGGA	AGTGGA	-			P-0014683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	231	511	0	ENST00000288135.5:c.1669_1674delTGGAAG	p.Trp557_Lys558del	p.W557_K558del	ENST00000288135	NM_000222.2	556	cAGTGGAag/cag					NEWRECORD																																																																									
HIST1H3C	0	MSKCC	GRCh37	6	26045789	26045789	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014683-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			363	50	327	0	ENST00000540144.1:c.151G>A	p.Glu51Lys	p.E51K	ENST00000540144	NM_003531.2	51	Gaa/Aaa					NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0000302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			500	101	667	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49037972	49037972	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0000302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			278	23	286	0	ENST00000267163.4:c.2211+1G>T		p.X737_splice	ENST00000267163	NM_000321.2	737						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29560178	29560178	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			325	37	261	0	ENST00000358273.4:c.3655G>A	p.Gly1219Arg	p.G1219R	ENST00000358273	NM_001042492.2	1219	Gga/Aga					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597384	10597387	+	frameshift_variant	Frame_Shift_Del	DEL	CCAC	CCAC	AAA			P-0000302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			517	141	741	3	ENST00000171111.5:c.1816_1819delinsTTT	p.Val606PhefsTer66	p.V606Ffs*66	ENST00000171111	NM_203500.1	606	GTGGct/TTTct					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52685769	52685769	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0000302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			310	37	401	0	ENST00000394830.3:c.703C>T	p.Gln235Ter	p.Q235*	ENST00000394830	NM_018313.4	235	Cag/Tag					NEWRECORD																																																																									
CD274	0	MSKCC	GRCh37	9	5457235	5457235	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0000302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	58	288	0	ENST00000381577.3:c.209G>C	p.Gly70Ala	p.G70A	ENST00000381577	NM_014143.3	70	gGa/gCa					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971112	21971113	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0000302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	23	318	0	ENST00000304494.5:c.245_246del	p.Val82AlafsTer37	p.V82Afs*37	ENST00000304494	NM_000077.4	82	gTG/g					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971112	21971113	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0000302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	23	318	0	ENST00000304494.5:c.245_246del	p.Val82AlafsTer37	p.V82Afs*37	ENST00000304494	NM_000077.4	82	gTG/g					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971112	21971113	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0000302-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			287	23	318	0	ENST00000304494.5:c.245_246del	p.Val82AlafsTer37	p.V82Afs*37	ENST00000304494	NM_000077.4	82	gTG/g					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0014391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1544	416	904	0	ENST00000269305.4:c.672+1G>T		p.X224_splice	ENST00000269305	NM_001126112.2	224						NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41201199	41201199	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1297	293	799	0	ENST00000357654.3:c.5345G>A	p.Trp1782Ter	p.W1782*	ENST00000357654	NM_007294.3	1782	tGg/tAg					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41209125	41209125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1156	276	656	2	ENST00000357654.3:c.5221G>A	p.Val1741Ile	p.V1741I	ENST00000357654	NM_007294.3	1741	Gtc/Atc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187517784	187517784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014391-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			486	71	216	0	ENST00000441802.2:c.12910G>A	p.Val4304Met	p.V4304M	ENST00000441802	NM_005245.3	4304	Gtg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	158	644	0	ENST00000269305.4:c.96+1G>A		p.X32_splice	ENST00000269305	NM_001126112.2	32						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0013441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	78	403	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	64	352	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52696268	52696268	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	59	465	0	ENST00000394830.3:c.409G>A	p.Ala137Thr	p.A137T	ENST00000394830	NM_018313.4	137	Gct/Act					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138374302	138374302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013441-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	93	609	1	ENST00000289153.2:c.3142G>A	p.Ala1048Thr	p.A1048T	ENST00000289153	NM_006219.2	1048	Gcg/Acg					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81335697	81335697	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	87	438	0	ENST00000222390.5:c.1663G>T	p.Gly555Ter	p.G555*	ENST00000222390	NM_000601.4	555	Gga/Tga					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43609001	43609001	+	splice_region_variant,intron_variant	Splice_Region	DEL	C	C	-			P-0015082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			565	63	413	1	ENST00000355710.3:c.1760-3del		p.X587_splice	ENST00000355710	NM_020975.4	587						NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220430	1220430	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0015082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	83	680	0	ENST00000326873.7:c.523A>T	p.Lys175Ter	p.K175*	ENST00000326873	NM_000455.4	175	Aag/Tag					NEWRECORD																																																																									
MLL4	0	MSKCC	GRCh37	19	36212342	36212342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			844	69	598	0	ENST00000222270.7:c.2093G>T	p.Arg698Leu	p.R698L	ENST00000222270	NM_014727.1	698	cGc/cTc					NEWRECORD																																																																									
CD274	0	MSKCC	GRCh37	9	5457399	5457399	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			211	28	127	0	ENST00000381577.3:c.373C>T	p.Arg125Ter	p.R125*	ENST00000381577	NM_014143.3	125	Cga/Tga					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39916504	39916504	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015082-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	99	691	1	ENST00000378444.4:c.4499C>T	p.Ala1500Val	p.A1500V	ENST00000378444	NM_001123385.1	1500	gCc/gTc					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625189	69625189	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	109	548	0	ENST00000334134.2:c.604C>A	p.Pro202Thr	p.P202T	ENST00000334134	NM_005247.2	202	Cct/Act					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	269	572	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175426	112175426	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913326		P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	278	349	0	ENST00000257430.4:c.4135G>T	p.Glu1379Ter	p.E1379*	ENST00000257430	NM_000038.5	1379	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577144	7577146	+	inframe_deletion	In_Frame_Del	DEL	AGT	AGT	-			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	440	636	0	ENST00000269305.4:c.792_794delACT	p.Leu265del	p.L265del	ENST00000269305	NM_001126112.2	264	ctACTg/ctg					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39657741	39657741	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	541	237	0	ENST00000361337.2:c.33+1G>A		p.X11_splice	ENST00000361337	NM_003286.2	11						NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70014295	70014295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	311	744	0	ENST00000352241.4:c.1459G>A	p.Val487Ile	p.V487I	ENST00000352241	NM_198159.2	487	Gtc/Atc					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153253826	153253826	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	200	432	1	ENST00000281708.4:c.907C>T	p.Gln303Ter	p.Q303*	ENST00000281708	NM_033632.3	303	Caa/Taa					NEWRECORD																																																																									
HIST1H3C	0	MSKCC	GRCh37	6	26045756	26045756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	484	886	1	ENST00000540144.1:c.118C>T	p.His40Tyr	p.H40Y	ENST00000540144	NM_003531.2	40	Cat/Tat					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157222582	157222582	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	297	488	0	ENST00000346085.5:c.1849C>T	p.Gln617Ter	p.Q617*	ENST00000346085	NM_020732.3	617	Cag/Tag					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89346154	89346154	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	221	348	0	ENST00000301030.4:c.6796G>A	p.Ala2266Thr	p.A2266T	ENST00000301030	NM_001256183.1	2266	Gcg/Acg					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	61	541	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc					NEWRECORD																																																																									
RIT1	0	MSKCC	GRCh37	1	155870205	155870205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	81	807	1	ENST00000368323.3:c.634C>T	p.Arg212Trp	p.R212W	ENST00000368323	NM_006912.5	212	Cgg/Tgg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971022	21971022	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	121	388	0	ENST00000361570.3:c.502T>G	p.Ser168Ala	p.S168A	ENST00000361570	NM_058195.3	168	Tct/Gct					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971022	21971022	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012712-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	121	388	0	ENST00000361570.3:c.502T>G	p.Ser168Ala	p.S168A	ENST00000361570	NM_058195.3	168	Tct/Gct					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591125	67591267	+	splice_acceptor_variant,splice_donor_variant,stop_lost,protein_altering_variant,intron_variant	Splice_Site	DEL	TGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTG	TGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTG	-			P-0014628-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			106	114	280	0	ENST00000274335.5:c.1719_1766del		p.X573_splice	ENST00000274335		573	cTGAGAAAGACGAGAGACCAATACTTGATGTAAGTATTTGAAATGGAATCCTATACATGAATAATTGGTGATTGCTACAATTCAGGATGAGTTAATGCGTTCTCTTTTCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGtt/ctt					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99467794	99467794	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014628-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			141	27	368	0	ENST00000268035.6:c.2663A>T	p.Tyr888Phe	p.Y888F	ENST00000268035	NM_000875.3	888	tAt/tTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	125	418	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36809495	36809495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	87	476	1	ENST00000373129.3:c.970G>A	p.Val324Ile	p.V324I	ENST00000373129	NM_032017.1	324	Gtc/Atc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175240	112175240	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	120	370	0	ENST00000257430.4:c.3949G>T	p.Glu1317Ter	p.E1317*	ENST00000257430	NM_000038.5	1317	Gaa/Taa					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131940554	131940554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	207	708	1	ENST00000265335.6:c.2581C>A	p.Gln861Lys	p.Q861K	ENST00000265335		861	Caa/Aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	61	562	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	37015055	37015055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	52	590	1	ENST00000358127.4:c.349C>T	p.Arg117Trp	p.R117W	ENST00000358127	NM_001280556.1	117	Cgg/Tgg					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12641686	12641686	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	69	478	0	ENST00000251849.4:c.955G>A	p.Ala319Thr	p.A319T	ENST00000251849	NM_002880.3	319	Gca/Aca					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118374025	118374025	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	75	577	0	ENST00000534358.1:c.7418C>A	p.Thr2473Asn	p.T2473N	ENST00000534358	NM_005933.3	2473	aCt/aAt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101690	27101690	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	41	401	1	ENST00000324856.7:c.4972C>T	p.Arg1658Trp	p.R1658W	ENST00000324856	NM_006015.4	1658	Cgg/Tgg					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46532758	46532758	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	34	280	0	ENST00000262741.5:c.320G>C	p.Gly107Ala	p.G107A	ENST00000262741	NM_003629.3	107	gGa/gCa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	73	405	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	25	332	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180039553	180039553	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	17	494	0	ENST00000261937.6:c.3490G>A	p.Glu1164Lys	p.E1164K	ENST00000261937	NM_182925.4	1164	Gag/Aag					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2968255	2968255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	45	453	0	ENST00000396946.4:c.1731C>A	p.Tyr577Ter	p.Y577*	ENST00000396946	NM_032415.4	577	taC/taA					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938836	76938836	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	31	618	0	ENST00000373344.5:c.1912C>A	p.His638Asn	p.H638N	ENST00000373344	NM_000489.3	638	Cat/Aat					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70118927	70118927	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010657-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	254	585	0	ENST00000245479.2:c.499A>G	p.Lys167Glu	p.K167E	ENST00000245479	NM_000346.3	167	Aag/Gag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	146	278	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151877006	151877006	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	54	448	0	ENST00000262189.6:c.7355G>T	p.Gly2452Val	p.G2452V	ENST00000262189	NM_170606.2	2452	gGa/gTa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8507306	8507306	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	57	418	0	ENST00000356435.5:c.1672G>T	p.Glu558Ter	p.E558*	ENST00000356435		558	Gag/Tag					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46205332	46205332	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0010442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	28	263	0	ENST00000334344.6:c.416C>A	p.Ser139Ter	p.S139*	ENST00000334344	NM_152641.2	139	tCg/tAg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49432063	49432063	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	68	558	0	ENST00000301067.7:c.9076G>A	p.Gly3026Ser	p.G3026S	ENST00000301067	NM_003482.3	3026	Ggc/Agc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931479	66931479	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	52	263	0	ENST00000374690.3:c.2121A>C	p.Glu707Asp	p.E707D	ENST00000374690	NM_000044.3	707	gaA/gaC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577070	7577070	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	179	887	0	ENST00000269305.4:c.868delC	p.Arg290AlafsTer55	p.R290Afs*55	ENST00000269305	NM_001126112.2	290	Cgc/gc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55225430	55225430	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	32	520	1	ENST00000275493.2:c.1282G>A	p.Gly428Ser	p.G428S	ENST00000275493	NM_005228.3	428	Ggc/Agc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2217918	2217918	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			940	133	568	0	ENST00000398665.3:c.2691+1G>A		p.X897_splice	ENST00000398665	NM_032482.2	897						NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143352325	143352325	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015026-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	69	362	2	ENST00000262992.4:c.88A>G	p.Thr30Ala	p.T30A	ENST00000262992	NM_001101669.1	30	Aca/Gca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	95	324	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119545693	119545693	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	98	418	0	ENST00000316626.5:c.1244C>T	p.Thr415Ile	p.T415I	ENST00000316626		415	aCt/aTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	162	455	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc					NEWRECORD																																																																									
KNSTRN	0	MSKCC	GRCh37	15	40679366	40679366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014412-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	127	260	0	ENST00000249776.8:c.444G>A	p.Met148Ile	p.M148I	ENST00000249776	NM_033286.3	148	atG/atA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	67	422	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189526242	189526242	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	174	601	1	ENST00000264731.3:c.506C>A	p.Thr169Asn	p.T169N	ENST00000264731	NM_003722.4	169	aCc/aAc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188961	32188961	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	79	685	2	ENST00000375023.3:c.593G>T	p.Cys198Phe	p.C198F	ENST00000375023	NM_004557.3	198	tGc/tTc					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50468080	50468080	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	57	334	0	ENST00000331340.3:c.1315C>T	p.Arg439Cys	p.R439C	ENST00000331340	NM_006060.4	439	Cgc/Tgc					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2154411	2154411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	56	620	0	ENST00000434045.2:c.517G>T	p.Asp173Tyr	p.D173Y	ENST00000434045	NM_001127598.1	173	Gac/Tac					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42005652	42005652	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	148	700	4	ENST00000219905.7:c.3388G>T	p.Glu1130Ter	p.E1130*	ENST00000219905	NM_001164273.1	1130	Gaa/Taa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117684016	117684017	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	100	281	0	ENST00000368508.3:c.3130_3131delinsAT	p.Pro1044Ile	p.P1044I	ENST00000368508	NM_002944.2	1044	CCa/ATa					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36012638	36012641	+	missense_variant	Missense_Mutation	ONP	GGCG	GGCG	CGCT			P-0010763-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	24	337	0	ENST00000358208.4:c.82_85delinsCGCT	p.Gly28_Gly29delinsArgTrp	p.G28_G29delinsRW	ENST00000358208		28	GGCGgg/CGCTgg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0006161-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			653	436	500	1	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0006161-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			253	179	201	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006161-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			120	477	509	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg					NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0006161-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			832	684	694	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433399	49433399	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0006161-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			473	28	234	0	ENST00000301067.7:c.8048G>A	p.Arg2683His	p.R2683H	ENST00000301067	NM_003482.3	2683	cGc/cAc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765025	66765025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006161-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			1943	966	968	0	ENST00000374690.3:c.37C>T	p.Arg13Trp	p.R13W	ENST00000374690	NM_000044.3	13	Cgg/Tgg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593583	55593603	+	protein_altering_variant	In_Frame_Del	DEL	AACCCATGTATGAAGTACAGT	AACCCATGTATGAAGTACAGT	TAC			P-0010949-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	285	406	0	ENST00000288135.5:c.1649_1669delinsTAC	p.Lys550_Trp557delinsIleArg	p.K550_W557delinsIR	ENST00000288135	NM_000222.2	550	aAACCCATGTATGAAGTACAGTgg/aTACgg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013394-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	46	479	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	328	716	0	ENST00000269305.4:c.811G>C	p.Glu271Gln	p.E271Q	ENST00000269305	NM_001126112.2	271	Gag/Cag					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37089037	37089037	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	88	508	0	ENST00000231790.2:c.1759A>G	p.Met587Val	p.M587V	ENST00000231790	NM_000249.3	587	Atg/Gtg					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49400019	49400019	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	189	748	0	ENST00000418115.1:c.318C>G	p.Phe106Leu	p.F106L	ENST00000418115	NM_001664.2	106	ttC/ttG					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142188214	142188214	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	71	509	1	ENST00000350721.4:c.6517C>T	p.Gln2173Ter	p.Q2173*	ENST00000350721	NM_001184.3	2173	Caa/Taa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142188402	142188402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	72	355	0	ENST00000350721.4:c.6329C>G	p.Ser2110Cys	p.S2110C	ENST00000350721	NM_001184.3	2110	tCc/tGc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5222975	5222975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	207	401	2	ENST00000357368.4:c.2828C>T	p.Ala943Val	p.A943V	ENST00000357368	NM_002850.3	943	gCc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	193	185	0	ENST00000269305.4:c.673-1G>T		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99152604	99152604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	282	309	0	ENST00000074304.5:c.400G>A	p.Gly134Ser	p.G134S	ENST00000074304	NM_001134224.1	134	Ggc/Agc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89480330	89480330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	565	252	0	ENST00000336596.2:c.2167C>G	p.Leu723Val	p.L723V	ENST00000336596	NM_005233.5	723	Cta/Gta					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66509098	66509098	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	202	224	0	ENST00000273854.3:c.229G>C	p.Ala77Pro	p.A77P	ENST00000273854	NM_004439.5	77	Gct/Cct					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50459433	50459433	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	190	200	0	ENST00000331340.3:c.722A>G	p.Lys241Arg	p.K241R	ENST00000331340	NM_006060.4	241	aAa/aGa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8465578	8465578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	359	415	0	ENST00000356435.5:c.3602C>T	p.Thr1201Ile	p.T1201I	ENST00000356435		1201	aCt/aTt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29546044	29546044	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	226	226	0	ENST00000358273.4:c.1549G>A	p.Glu517Lys	p.E517K	ENST00000358273	NM_001042492.2	517	Gaa/Aaa					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37619204	37619204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	205	248	0	ENST00000447079.4:c.880C>T	p.Pro294Ser	p.P294S	ENST00000447079	NM_015083.1	294	Ccc/Tcc					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	111983136	111983136	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	256	386	0	ENST00000368678.4:c.1411del	p.Glu471ArgfsTer26	p.E471Rfs*26	ENST00000368678		471	Gag/ag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	94	388	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	130	435	1	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41242984	41242984	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	297	518	0	ENST00000357654.3:c.4162C>T	p.Gln1388Ter	p.Q1388*	ENST00000357654	NM_007294.3	1388	Cag/Tag					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56492883	56492887	+	frameshift_variant	Frame_Shift_Del	DEL	GCCAT	GCCAT	-			P-0011554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	151	247	0	ENST00000407977.2:c.52_56del	p.Met18TyrfsTer20	p.M18Yfs*20	ENST00000407977		18	ATGGCt/t					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258769	115258770	+	stop_gained	Nonsense_Mutation	DNP	TG	TG	AA			P-0011554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	80	348	1	ENST00000369535.4:c.12_13delinsTT	p.Lys5Ter	p.K5*	ENST00000369535	NM_002524.4	4	taCAaa/taTTaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	207	626	3	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0013189-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2881	194	496	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	183	440	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	260	643	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55961059	55961059	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	121	674	0	ENST00000263923.4:c.2881C>T	p.Arg961Trp	p.R961W	ENST00000263923	NM_002253.2	961	Cgg/Tgg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29008300	29008300	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	262	665	0	ENST00000282397.4:c.571G>T	p.Gly191Cys	p.G191C	ENST00000282397	NM_002019.4	191	Ggc/Tgc					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42860440	42860440	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	202	467	0	ENST00000398585.3:c.437T>A	p.Met146Lys	p.M146K	ENST00000398585	NM_001135099.1	146	aTg/aAg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187539752	187539752	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	114	550	0	ENST00000441802.2:c.7988G>T	p.Gly2663Val	p.G2663V	ENST00000441802	NM_005245.3	2663	gGc/gTc					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	112035593	112035593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	375	837	2	ENST00000368678.4:c.301C>A	p.Leu101Met	p.L101M	ENST00000368678		101	Ctg/Atg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8633329	8633329	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	143	710	0	ENST00000356435.5:c.340A>T	p.Thr114Ser	p.T114S	ENST00000356435		114	Aca/Tca					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76889200	76889200	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013867-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	92	329	0	ENST00000373344.5:c.4810G>T	p.Val1604Leu	p.V1604L	ENST00000373344	NM_000489.3	1604	Gtg/Ttg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	621	562	0	ENST00000269305.4:c.772G>A	p.Glu258Lys	p.E258K	ENST00000269305	NM_001126112.2	258	Gaa/Aaa					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36923394	36923394	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	178	765	1	ENST00000358127.4:c.868G>A	p.Gly290Arg	p.G290R	ENST00000358127	NM_001280556.1	290	Ggg/Agg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100934	27100934	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	148	574	1	ENST00000324856.7:c.4216C>A	p.Pro1406Thr	p.P1406T	ENST00000324856	NM_006015.4	1406	Ccc/Acc					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18800934	18800934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	67	361	1	ENST00000266497.5:c.4310G>T	p.Trp1437Leu	p.W1437L	ENST00000266497		1437	tGg/tTg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8389354	8389354	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	102	532	1	ENST00000356435.5:c.4264C>T	p.Gln1422Ter	p.Q1422*	ENST00000356435		1422	Caa/Taa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8436662	8436662	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014179-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	139	482	0	ENST00000356435.5:c.4016T>C	p.Ile1339Thr	p.I1339T	ENST00000356435		1339	aTc/aCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	254	519	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16254839	16254839	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	106	487	1	ENST00000375759.3:c.2104C>T	p.Arg702Ter	p.R702*	ENST00000375759	NM_015001.2	702	Cga/Tga					NEWRECORD																																																																									
VTCN1	0	MSKCC	GRCh37	1	117690301	117690301	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	106	390	0	ENST00000369458.3:c.828C>G	p.Ser276Arg	p.S276R	ENST00000369458	NM_024626.3	276	agC/agG					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94068097	94068097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1447	112	664	0	ENST00000369303.4:c.865C>G	p.Gln289Glu	p.Q289E	ENST00000369303	NM_004440.3	289	Caa/Gaa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139390919	139390934	+	frameshift_variant	Frame_Shift_Del	DEL	TGCTGAGCTCACGCCA	TGCTGAGCTCACGCCA	-			P-0010604-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	91	356	0	ENST00000277541.6:c.7257_7272del	p.Gly2420ProfsTer10	p.G2420Pfs*10	ENST00000277541	NM_017617.3	2419	ctTGGCGTGAGCTCAGCA/ct					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005645-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			623	455	466	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16260036	16260036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005645-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			705	152	475	0	ENST00000375759.3:c.7301C>T	p.Pro2434Leu	p.P2434L	ENST00000375759	NM_015001.2	2434	cCt/cTt					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78433868	78433868	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005645-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			840	171	497	0	ENST00000370768.2:c.231A>T	p.Lys77Asn	p.K77N	ENST00000370768	NM_003902.3	77	aaA/aaT					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187446862	187446862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005645-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			770	261	527	0	ENST00000232014.4:c.1331G>T	p.Ser444Ile	p.S444I	ENST00000232014	NM_001130845.1	444	aGc/aTc					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149505133	149505133	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005645-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1125	206	649	0	ENST00000261799.4:c.1682G>C	p.Arg561Pro	p.R561P	ENST00000261799	NM_002609.3	561	cGt/cCt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108114835	108114835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0005645-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			525	610	419	0	ENST00000278616.4:c.652C>T	p.Gln218Ter	p.Q218*	ENST00000278616	NM_000051.3	218	Cag/Tag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72984829	72984829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0005645-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			849	213	556	0	ENST00000268489.5:c.2755G>T	p.Gly919Cys	p.G919C	ENST00000268489	NM_006885.3	919	Ggc/Tgc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212426804	212426804	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0005645-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			508	111	311	0	ENST00000342788.4:c.2311A>T	p.Ile771Phe	p.I771F	ENST00000342788	NM_005235.2	771	Atc/Ttc					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	37015106	37015106	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005645-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			922	191	625	0	ENST00000358127.4:c.298G>A	p.Ala100Thr	p.A100T	ENST00000358127	NM_001280556.1	100	Gct/Act					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183797	10183797	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	167	286	1	ENST00000256474.2:c.266T>A	p.Leu89His	p.L89H	ENST00000256474	NM_000551.3	89	cTc/cAc					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138376590	138376590	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	29	563	0	ENST00000289153.2:c.2884T>A	p.Tyr962Asn	p.Y962N	ENST00000289153	NM_006219.2	962	Tat/Aat					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106182974	106182974	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	57	567	0	ENST00000380013.4:c.4013A>C	p.Lys1338Thr	p.K1338T	ENST00000380013	NM_001127208.2	1338	aAg/aCg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70348281	70348281	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	292	291	0	ENST00000374080.3:c.3345C>G	p.Cys1115Trp	p.C1115W	ENST00000374080		1115	tgC/tgG					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117638347	117638347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	69	578	0	ENST00000368508.3:c.6094G>A	p.Gly2032Arg	p.G2032R	ENST00000368508	NM_002944.2	2032	Gga/Aga					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47058730	47058734	+	frameshift_variant	Frame_Shift_Del	DEL	AACAC	AACAC	T			P-0012525-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	42	349	0	ENST00000409792.3:c.7544_7548delinsA	p.Gly2515GlufsTer2	p.G2515Efs*2	ENST00000409792	NM_014159.6	2515	gGTGTT/gA					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593613	55593613	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	264	650	0	ENST00000288135.5:c.1679T>A	p.Val560Asp	p.V560D	ENST00000288135	NM_000222.2	560	gTt/gAt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041671	42041678	+	frameshift_variant	Frame_Shift_Del	DEL	CCTAGCTC	CCTAGCTC	-			P-0013235-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	418	871	1	ENST00000219905.7:c.5867_5874delCTAGCTCC	p.Pro1956HisfsTer22	p.P1956Hfs*22	ENST00000219905	NM_001164273.1	1956	CCTAGCTCc/c					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	97	517	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47034419	47034420	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	168	540	0	ENST00000329236.7:c.273_274del	p.Gln92GlufsTer10	p.Q92Efs*10	ENST00000329236	NM_001204466.1	91	ggTCag/ggag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	81	535	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45368211	45368211	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0012896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	196	695	0	ENST00000262160.6:c.1391C>G	p.Ser464Ter	p.S464*	ENST00000262160	NM_005901.5	464	tCa/tGa					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0012896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	74	518	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191506	10191506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			162	273	486	42	ENST00000256474.2:c.499C>T	p.Arg167Trp	p.R167W	ENST00000256474	NM_000551.3	167	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	429	590	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0013786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	166	565	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178922363	178922363	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	164	494	0	ENST00000263967.3:c.1132T>C	p.Cys378Arg	p.C378R	ENST00000263967	NM_006218.2	378	Tgt/Cgt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27089513	27089513	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	175	506	0	ENST00000324856.7:c.2472del	p.Ser825ValfsTer8	p.S825Vfs*8	ENST00000324856	NM_006015.4	823	taC/ta					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40748477	40748477	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	253	730	0	ENST00000392038.2:c.405G>C	p.Glu135Asp	p.E135D	ENST00000392038	NM_001626.4	135	gaG/gaC					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45855565	45855565	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	199	692	1	ENST00000391945.4:c.2092C>T	p.Gln698Ter	p.Q698*	ENST00000391945	NM_000400.3	698	Cag/Tag					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48942688	48942688	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	206	668	0	ENST00000267163.4:c.1075A>T	p.Lys359Ter	p.K359*	ENST00000267163	NM_000321.2	359	Aaa/Taa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41400113	41400113	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	169	565	0	ENST00000373198.4:c.646G>T	p.Gly216Cys	p.G216C	ENST00000373198	NM_133170.3	216	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	249	534	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453149	140453149	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	199	312	0	ENST00000288602.6:c.1786G>C	p.Gly596Arg	p.G596R	ENST00000288602	NM_004333.4	596	Ggt/Cgt					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241672028	241672028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	385	310	1	ENST00000366560.3:c.613G>A	p.Glu205Lys	p.E205K	ENST00000366560	NM_000143.3	205	Gaa/Aaa					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25469567	25469567	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	231	475	0	ENST00000264709.3:c.1201G>T	p.Val401Leu	p.V401L	ENST00000264709	NM_175629.2	401	Gtg/Ttg					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190732539	190732539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	177	483	0	ENST00000441310.2:c.2357C>G	p.Ser786Cys	p.S786C	ENST00000441310	NM_000534.4	786	tCt/tGt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89478303	89478303	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	141	365	0	ENST00000336596.2:c.2122G>C	p.Asp708His	p.D708H	ENST00000336596	NM_005233.5	708	Gat/Cat					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66230872	66230872	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	151	488	1	ENST00000273854.3:c.2099G>T	p.Arg700Ile	p.R700I	ENST00000273854	NM_004439.5	700	aGa/aTa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356257	66356257	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	192	418	0	ENST00000273854.3:c.1240T>C	p.Tyr414His	p.Y414H	ENST00000273854	NM_004439.5	414	Tac/Cac					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143067048	143067048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	189	554	0	ENST00000262992.4:c.1665C>A	p.Asn555Lys	p.N555K	ENST00000262992	NM_001101669.1	555	aaC/aaA					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32929225	32929225	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	147	745	0	ENST00000380152.3:c.7235C>G	p.Thr2412Ser	p.T2412S	ENST00000380152		2412	aCt/aGt					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68857311	68857311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010025-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	176	385	1	ENST00000261769.5:c.1946C>T	p.Ser649Phe	p.S649F	ENST00000261769	NM_004360.3	649	tCt/tTt					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128044287	128044287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	210	498	0	ENST00000285398.2:c.1334C>T	p.Thr445Ile	p.T445I	ENST00000285398	NM_000122.1	445	aCc/aTc					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0011102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	96	316	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga					NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0011102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	119	411	1	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202141584	202141584	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	262	545	0	ENST00000358485.4:c.872C>G	p.Pro291Arg	p.P291R	ENST00000358485	NM_001080125.1	291	cCt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	50	473	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37627730	37627730	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1161	76	738	0	ENST00000447079.4:c.1645C>T	p.Pro549Ser	p.P549S	ENST00000447079	NM_015083.1	549	Ccc/Tcc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099957	157099957	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	61	542	1	ENST00000346085.5:c.894T>A	p.Tyr298Ter	p.Y298*	ENST00000346085	NM_020732.3	298	taT/taA					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36923382	36923382	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			950	57	588	0	ENST00000358127.4:c.880C>T	p.Pro294Ser	p.P294S	ENST00000358127	NM_001280556.1	294	Cca/Tca					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93650080	93650080	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014577-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	52	410	0	ENST00000375746.1:c.1631T>C	p.Ile544Thr	p.I544T	ENST00000375746	NM_001174167.1	544	aTc/aCc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31389095	31389095	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	52	378	0	ENST00000328111.2:c.2008C>T	p.Arg670Trp	p.R670W	ENST00000328111	NM_006892.3	670	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	534	632	0	ENST00000269305.4:c.841G>T	p.Asp281Tyr	p.D281Y	ENST00000269305	NM_001126112.2	281	Gac/Tac					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227662977	227662977	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	361	530	0	ENST00000305123.5:c.478T>A	p.Phe160Ile	p.F160I	ENST00000305123	NM_005544.2	160	Ttc/Atc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259182	89259182	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	1134	395	0	ENST00000336596.2:c.326T>A	p.Ile109Asn	p.I109N	ENST00000336596	NM_005233.5	109	aTt/aAt					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102100553	102100553	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	421	538	0	ENST00000282441.5:c.1397A>T	p.Glu466Val	p.E466V	ENST00000282441	NM_001130145.2	466	gAa/gTa					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17117122	17117122	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1764	347	595	0	ENST00000285071.4:c.1587A>T	p.Lys529Asn	p.K529N	ENST00000285071	NM_144997.5	529	aaA/aaT					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53226147	53226147	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	356	545	0	ENST00000375401.3:c.2702T>C	p.Leu901Pro	p.L901P	ENST00000375401	NM_004187.3	901	cTg/cCg					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100617210	100617210	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2416	239	699	2	ENST00000308731.7:c.539C>A	p.Ser180Tyr	p.S180Y	ENST00000308731	NM_000061.2	180	tCt/tAt					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162725044	162725044	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1630	331	452	0	ENST00000367921.3:c.516C>G	p.His172Gln	p.H172Q	ENST00000367921	NM_006182.2	172	caC/caG					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729865	41729865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1352	433	663	0	ENST00000242208.4:c.664C>T	p.Pro222Ser	p.P222S	ENST00000242208	NM_002192.2	222	Cct/Tct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0014552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			878	307	659	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	92	186	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
INPPL1	0	MSKCC	GRCh37	11	71941881	71941881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014552-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	139	599	0	ENST00000298229.2:c.1239C>A	p.Asn413Lys	p.N413K	ENST00000298229	NM_001567.3	413	aaC/aaA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			591	110	676	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	59	710	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123263446	123263446	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	39	491	0	ENST00000358487.5:c.1297G>C	p.Glu433Gln	p.E433Q	ENST00000358487	NM_000141.4	433	Gag/Cag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857056	9857056	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	31	292	0	ENST00000330684.3:c.4345A>T	p.Ser1449Cys	p.S1449C	ENST00000330684	NM_001134407.1	1449	Agc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576893	7576923	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGGGGAGAGGAGCTGGTGTTGTTGGGCA	GGCTGGGGAGAGGAGCTGGTGTTGTTGGGCA	-			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	50	825	0	ENST00000269305.4:c.923_953del	p.Leu308GlnfsTer27	p.L308Qfs*27	ENST00000269305	NM_001126112.2	308	cTGCCCAACAACACCAGCTCCTCTCCCCAGCCa/ca					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41243023	41243023	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			832	48	689	0	ENST00000357654.3:c.4123G>A	p.Glu1375Lys	p.E1375K	ENST00000357654	NM_007294.3	1375	Gaa/Aaa					NEWRECORD																																																																									
PDCD1LG2	0	MSKCC	GRCh37	9	5549596	5549596	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs111291501		P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	37	649	0	ENST00000397747.3:c.623A>G	p.Asp208Gly	p.D208G	ENST00000397747	NM_025239.3	208	gAc/gGc					NEWRECORD																																																																									
PDCD1LG2	0	MSKCC	GRCh37	9	5563193	5563193	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	33	547	0	ENST00000397747.3:c.798G>C	p.Lys266Asn	p.K266N	ENST00000397747	NM_025239.3	266	aaG/aaC					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939033	76939034	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0014614-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	40	532	0	ENST00000373344.5:c.1714_1715delinsTT	p.Gly572Leu	p.G572L	ENST00000373344	NM_000489.3	572	GGa/TTa					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99440126	99440126	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	172	542	1	ENST00000268035.6:c.1094G>T	p.Arg365Leu	p.R365L	ENST00000268035	NM_000875.3	365	cGa/cTa					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225376152	225376160	+	inframe_deletion	In_Frame_Del	DEL	GTTCCCTTT	GTTCCCTTT	-			P-0011267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	183	770	0	ENST00000264414.4:c.794_802del	p.Glu265_Leu268delinsVal	p.E265_L268delinsV	ENST00000264414	NM_003590.4	265	gAAAGGGAACtc/gtc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	173	350	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	342	407	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21970901	21970901	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs45476696		P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	342	407	0	ENST00000304494.5:c.457G>A	p.Asp153Asn	p.D153N	ENST00000304494	NM_000077.4	153	Gac/Aac					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729115	66729129	+	inframe_deletion	In_Frame_Del	DEL	GGAACCAGATCATAA	GGAACCAGATCATAA	-			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	693	493	0	ENST00000307102.5:c.325_339del	p.Asn109_Arg113del	p.N109_R113del	ENST00000307102	NM_002755.3	108	cGGAACCAGATCATAAgg/cgg					NEWRECORD																																																																									
SRSF2	0	MSKCC	GRCh37	17	74732959	74732959	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	321	355	0	ENST00000359995.5:c.284C>T	p.Pro95Leu	p.P95L	ENST00000359995	NM_001195427.1	95	cCc/cTc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29754865	29754865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	289	352	0	ENST00000389048.3:c.1070C>T	p.Pro357Leu	p.P357L	ENST00000389048	NM_004304.4	357	cCc/cTc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117632205	117632205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	396	478	0	ENST00000368508.3:c.6211G>A	p.Glu2071Lys	p.E2071K	ENST00000368508	NM_002944.2	2071	Gaa/Aaa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28897053	28897053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	224	326	0	ENST00000282397.4:c.2827G>A	p.Glu943Lys	p.E943K	ENST00000282397	NM_002019.4	943	Gaa/Aaa					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43804359	43804359	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	323	449	0	ENST00000372470.3:c.359G>A	p.Arg120Gln	p.R120Q	ENST00000372470	NM_005373.2	120	cGg/cAg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120491703	120491703	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	468	483	0	ENST00000256646.2:c.2526T>A	p.Cys842Ter	p.C842*	ENST00000256646	NM_024408.3	842	tgT/tgA					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212652797	212652797	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	436	493	1	ENST00000342788.4:c.509C>T	p.Pro170Leu	p.P170L	ENST00000342788	NM_005235.2	170	cCa/cTa					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185191448	185191448	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	306	356	0	ENST00000265026.3:c.2329G>A	p.Glu777Lys	p.E777K	ENST00000265026	NM_004721.4	777	Gaa/Aaa					NEWRECORD																																																																									
CD274	0	MSKCC	GRCh37	9	5457282	5457282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	279	278	0	ENST00000381577.3:c.256C>T	p.Arg86Trp	p.R86W	ENST00000381577	NM_014143.3	86	Cgg/Tgg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118342586	118342586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	260	542	0	ENST00000534358.1:c.712G>A	p.Gly238Arg	p.G238R	ENST00000534358	NM_005933.3	238	Gga/Aga					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15350313	15350313	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	283	432	0	ENST00000263377.2:c.3466G>A	p.Asp1156Asn	p.D1156N	ENST00000263377	NM_058243.2	1156	Gat/Aat					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42852433	42852433	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	352	410	0	ENST00000398585.3:c.653G>A	p.Gly218Glu	p.G218E	ENST00000398585	NM_001135099.1	218	gGg/gAg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29551282	29551284	+	stop_gained	Nonsense_Mutation	ONP	GGA	GGA	AGT			P-0010818-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	306	477	0	ENST00000389048.3:c.1346_1348delinsACT	p.Leu449_Gln450delinsHisTer	p.L449_Q450delinsH*	ENST00000389048	NM_004304.4	449	cTCCag/cACTag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	382	242	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40367093	40367093	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	240	465	0	ENST00000397332.2:c.104C>G	p.Ser35Trp	p.S35W	ENST00000397332	NM_001033082.2	35	tCg/tGg					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61722614	61722614	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	237	341	0	ENST00000401558.2:c.1023A>C	p.Leu341Phe	p.L341F	ENST00000401558	NM_003400.3	341	ttA/ttC					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72827783	72827783	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1419	394	490	0	ENST00000268489.5:c.8798C>G	p.Ser2933Cys	p.S2933C	ENST00000268489	NM_006885.3	2933	tCt/tGt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207162	1207162	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	656	1210	1	ENST00000326873.7:c.250A>T	p.Lys84Ter	p.K84*	ENST00000326873	NM_000455.4	84	Aag/Tag					NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	41101118	41101118	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs751886972		P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	109	526	0	ENST00000373198.4:c.1238C>T	p.Ala413Val	p.A413V	ENST00000373198	NM_133170.3	413	gCg/gTg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8404587	8404587	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			275	46	304	1	ENST00000356435.5:c.4160C>T	p.Ala1387Val	p.A1387V	ENST00000356435		1387	gCg/gTg					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333776	70333776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	204	559	0	ENST00000373644.4:c.1681G>T	p.Val561Leu	p.V561L	ENST00000373644	NM_030625.2	561	Gtg/Ttg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46230728	46230728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	59	275	0	ENST00000334344.6:c.977C>T	p.Ser326Phe	p.S326F	ENST00000334344	NM_152641.2	326	tCt/tTt					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112893789	112893789	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			274	190	444	0	ENST00000351677.2:c.678A>G	p.Ile226Met	p.I226M	ENST00000351677	NM_002834.3	226	atA/atG					NEWRECORD																																																																									
SLX4	0	MSKCC	GRCh37	16	3641233	3641235	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1198	200	1294	1	ENST00000294008.3:c.2404_2406del	p.Glu802del	p.E802del	ENST00000294008	NM_032444.2	802	GAG/-					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610135	10610140	+	inframe_deletion	In_Frame_Del	DEL	TCAGCG	TCAGCG	-			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	451	846	1	ENST00000171111.5:c.570_575del	p.Phe190_Glu192delinsLeu	p.F190_E192delinsL	ENST00000171111	NM_203500.1	190	ttCGCTGAg/ttg					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25468144	25468144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	583	1122	3	ENST00000264709.3:c.1532G>A	p.Gly511Glu	p.G511E	ENST00000264709	NM_175629.2	511	gGa/gAa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89457239	89457239	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			263	229	346	0	ENST00000336596.2:c.1720C>G	p.His574Asp	p.H574D	ENST00000336596	NM_005233.5	574	Cat/Gat					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93982087	93982087	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			193	87	442	1	ENST00000369303.4:c.1378G>T	p.Glu460Ter	p.E460*	ENST00000369303	NM_004440.3	460	Gag/Tag					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2979524	2979524	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014257-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			504	220	518	0	ENST00000396946.4:c.723G>T	p.Glu241Asp	p.E241D	ENST00000396946	NM_032415.4	241	gaG/gaT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	484	516	1	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578476	7578476	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	497	553	0	ENST00000269305.4:c.454C>T	p.Pro152Ser	p.P152S	ENST00000269305	NM_001126112.2	152	Ccg/Tcg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125789	47125789	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	378	451	0	ENST00000409792.3:c.5481G>T	p.Trp1827Cys	p.W1827C	ENST00000409792	NM_014159.6	1827	tgG/tgT					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66270177	66270177	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	205	556	2	ENST00000273854.3:c.1705C>T	p.Gln569Ter	p.Q569*	ENST00000273854	NM_004439.5	569	Caa/Taa					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26022307	26022307	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	670	781	0	ENST00000435504.4:c.350G>C	p.Ser117Thr	p.S117T	ENST00000435504		117	aGc/aCc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29551347	29551347	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	171	433	0	ENST00000389048.3:c.1283G>C	p.Gly428Ala	p.G428A	ENST00000389048	NM_004304.4	428	gGa/gCa					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851841	134851841	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	530	564	1	ENST00000398015.3:c.1247G>T	p.Ser416Ile	p.S416I	ENST00000398015	NM_004441.4	416	aGt/aTt					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27777904	27777904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	418	1141	1	ENST00000369163.2:c.53G>T	p.Arg18Leu	p.R18L	ENST00000369163	NM_003536.2	18	cGc/cTc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163560	32163560	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	197	515	0	ENST00000375023.3:c.5666G>C	p.Arg1889Pro	p.R1889P	ENST00000375023	NM_004557.3	1889	cGg/cCg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8317894	8317894	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	476	570	0	ENST00000356435.5:c.5719T>A	p.Phe1907Ile	p.F1907I	ENST00000356435		1907	Ttt/Att					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8500793	8500793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	351	517	1	ENST00000356435.5:c.2089C>T	p.Pro697Ser	p.P697S	ENST00000356435		697	Cct/Tct					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115120954	115120954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	428	485	1	ENST00000257566.3:c.52C>T	p.His18Tyr	p.H18Y	ENST00000257566	NM_016569.3	18	Cat/Tat					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28631526	28631526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1174	509	647	0	ENST00000241453.7:c.442G>A	p.Glu148Lys	p.E148K	ENST00000241453	NM_004119.2	148	Gaa/Aaa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954221	48954221	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	544	485	0	ENST00000267163.4:c.1421+1G>T		p.X474_splice	ENST00000267163	NM_000321.2	474						NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42002991	42002991	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	810	918	1	ENST00000219905.7:c.2528G>T	p.Gly843Val	p.G843V	ENST00000219905	NM_001164273.1	843	gGt/gTt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141557	11141557	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	534	601	0	ENST00000344626.4:c.3534G>C	p.Trp1178Cys	p.W1178C	ENST00000344626	NM_003072.3	1178	tgG/tgC					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481943	56481943	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012280-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	275	576	0	ENST00000267101.3:c.874del	p.His292IlefsTer21	p.H292Ifs*21	ENST00000267101	NM_001982.3	291	Ccc/cc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	160	397	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	87	371	1	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41244821	41244821	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	119	503	0	ENST00000357654.3:c.2727T>A	p.Asn909Lys	p.N909K	ENST00000357654	NM_007294.3	909	aaT/aaA					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266012	41266312	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTG	TATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAAAGTTAGTG	-			P-0012781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	32	340	0	ENST00000349496.5:c.14-1_241+72del		p.X5_splice	ENST00000349496	NM_001904.3	5						NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189526287	189526287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	232	162	0	ENST00000264731.3:c.551C>T	p.Ser184Leu	p.S184L	ENST00000264731	NM_003722.4	184	tCg/tTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579699	7579699	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	242	323	0	ENST00000269305.4:c.96+1G>T		p.X32_splice	ENST00000269305	NM_001126112.2	32						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29486070	29486070	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	101	312	0	ENST00000358273.4:c.247C>T	p.Gln83Ter	p.Q83*	ENST00000358273	NM_001042492.2	83	Cag/Tag					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437782	52437782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0010426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1941	531	743	0	ENST00000460680.1:c.1379C>G	p.Ser460Ter	p.S460*	ENST00000460680	NM_004656.3	460	tCa/tGa					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65312410	65312410	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	144	269	0	ENST00000342505.4:c.1909G>C	p.Glu637Gln	p.E637Q	ENST00000342505	NM_002227.2	637	Gag/Cag					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149616	202149616	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	77	285	0	ENST00000358485.4:c.1057G>C	p.Glu353Gln	p.E353Q	ENST00000358485	NM_001080125.1	353	Gag/Cag					NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49412905	49412905	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519951		P-0010426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	229	462	0	ENST00000418115.1:c.118G>A	p.Glu40Lys	p.E40K	ENST00000418115	NM_001664.2	40	Gag/Aag					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28608305	28608305	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	65	427	0	ENST00000241453.7:c.1751C>A	p.Ser584Tyr	p.S584Y	ENST00000241453	NM_004119.2	584	tCc/tAc					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63532550	63532550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	201	256	0	ENST00000307078.5:c.2029C>A	p.His677Asn	p.H677N	ENST00000307078	NM_004655.3	677	Cac/Aac					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115117362	115117363	+	missense_variant	Missense_Mutation	DNP	TA	TA	AG			P-0010426-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	171	517	0	ENST00000257566.3:c.811_812delinsCT	p.Tyr271Leu	p.Y271L	ENST00000257566	NM_016569.3	271	TAc/CTc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120612013	120612014	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0010567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	10	53	0	ENST00000256646.2:c.7_8delinsTT	p.Ala3Phe	p.A3F	ENST00000256646	NM_024408.3	3	GCc/TTc					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40363621	40363623	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0010567-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	80	354	0	ENST00000397332.2:c.606_608del	p.Val203del	p.V203del	ENST00000397332	NM_001033082.2	202	gtTGTg/gtg					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010629-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	186	449	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106708	27106708	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	487	339	1	ENST00000324856.7:c.6319G>T	p.Gly2107Cys	p.G2107C	ENST00000324856	NM_006015.4	2107	Ggc/Tgc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29474107	29474107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	418	341	0	ENST00000389048.3:c.2068G>A	p.Ala690Thr	p.A690T	ENST00000389048	NM_004304.4	690	Gcc/Acc					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47639653	47639653	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	452	377	0	ENST00000233146.2:c.746A>T	p.Lys249Met	p.K249M	ENST00000233146	NM_000251.2	249	aAg/aTg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134960072	134960072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1169	528	330	0	ENST00000398015.3:c.2429A>G	p.Tyr810Cys	p.Y810C	ENST00000398015	NM_004441.4	810	tAt/tGt					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876179	35876179	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	360	384	0	ENST00000303115.3:c.971T>C	p.Leu324Pro	p.L324P	ENST00000303115	NM_002185.3	324	cTg/cCg					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553662	106553662	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	352	230	0	ENST00000369096.4:c.1627A>T	p.Ser543Cys	p.S543C	ENST00000369096	NM_001198.3	543	Agc/Tgc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140624386	140624386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	354	250	0	ENST00000288602.6:c.118G>T	p.Asp40Tyr	p.D40Y	ENST00000288602	NM_004333.4	40	Gac/Tac					NEWRECORD																																																																									
FGF4	0	MSKCC	GRCh37	11	69589684	69589684	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	246	299	1	ENST00000168712.1:c.169C>A	p.Arg57Ser	p.R57S	ENST00000168712	NM_002007.2	57	Cgc/Agc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435872	49435872	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	502	478	0	ENST00000301067.7:c.6109G>T	p.Asp2037Tyr	p.D2037Y	ENST00000301067	NM_003482.3	2037	Gac/Tac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	298	228	0	ENST00000269305.4:c.673-2A>G		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028610	12028610	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	362	336	0	ENST00000353533.5:c.814-1G>T		p.X272_splice	ENST00000353533	NM_003010.3	272						NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20148692	20148693	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	377	404	1	ENST00000379607.5:c.370_371delinsTT	p.Gly124Leu	p.G124L	ENST00000379607	NM_001412.3	124	GGa/TTa					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765659	66765659	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	509	559	1	ENST00000374690.3:c.671A>G	p.Asn224Ser	p.N224S	ENST00000374690	NM_000044.3	224	aAt/aGt					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766456	66766456	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	360	324	1	ENST00000374690.3:c.1468C>G	p.Leu490Val	p.L490V	ENST00000374690	NM_000044.3	490	Ctg/Gtg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123220444	123220444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	466	544	1	ENST00000218089.9:c.3101G>A	p.Arg1034Lys	p.R1034K	ENST00000218089	NM_001042749.1	1034	aGa/aAa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48953742	48953742	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			49	857	304	3	ENST00000267163.4:c.1346del	p.Gly449GlufsTer8	p.G449Efs*8	ENST00000267163	NM_000321.2	449	Gga/ga					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142274822	142274822	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	443	467	0	ENST00000350721.4:c.2238del	p.Ala747ProfsTer12	p.A747Pfs*12	ENST00000350721	NM_001184.3	746	aaA/aa					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533875	533875	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	749	596	0	ENST00000311189.7:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000311189		61	Cag/Aag					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69222593	69222593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1495	91	610	0	ENST00000462284.1:c.566G>A	p.Arg189His	p.R189H	ENST00000462284	NM_002392.5	189	cGc/cAc					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90970995	90970995	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1559	123	721	0	ENST00000265433.3:c.1082C>A	p.Thr361Lys	p.T361K	ENST00000265433	NM_002485.4	361	aCa/aAa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88669556	88669556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	97	632	2	ENST00000360948.2:c.1342G>T	p.Val448Phe	p.V448F	ENST00000360948	NM_001012338.2	448	Gtt/Ttt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29550505	29550505	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	125	494	1	ENST00000358273.4:c.1765C>G	p.Gln589Glu	p.Q589E	ENST00000358273	NM_001042492.2	589	Caa/Gaa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556391	29556391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	176	529	0	ENST00000358273.4:c.2758C>G	p.Leu920Val	p.L920V	ENST00000358273	NM_001042492.2	920	Ctg/Gtg					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37646866	37646867	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0011003-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	494	802	1	ENST00000447079.4:c.1988_1989del	p.Arg663ProfsTer36	p.R663Pfs*36	ENST00000447079	NM_015083.1	663	cGT/c					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46231437	46231437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	410	519	0	ENST00000334344.6:c.1277C>T	p.Thr426Met	p.T426M	ENST00000334344	NM_152641.2	426	aCg/aTg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220629	1220629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	234	563	0	ENST00000326873.7:c.647C>T	p.Ser216Phe	p.S216F	ENST00000326873	NM_000455.4	216	tCc/tTc					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202136279	202136279	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	318	667	2	ENST00000358485.4:c.523G>T	p.Glu175Ter	p.E175*	ENST00000358485	NM_001080125.1	175	Gaa/Taa					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	51	226	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112884135	112884135	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	140	453	0	ENST00000351677.2:c.70G>A	p.Gly24Arg	p.G24R	ENST00000351677	NM_002834.3	24	Gga/Aga					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89371626	89371626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	124	545	0	ENST00000301030.4:c.214G>C	p.Asp72His	p.D72H	ENST00000301030	NM_001256183.1	72	Gac/Cac					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1293860	1293860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	83	485	0	ENST00000310581.5:c.1141C>T	p.Arg381Cys	p.R381C	ENST00000310581	NM_198253.2	381	Cgc/Tgc					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35861079	35861079	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	95	377	0	ENST00000303115.3:c.208G>C	p.Glu70Gln	p.E70Q	ENST00000303115	NM_002185.3	70	Gaa/Caa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151880096	151880096	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	193	720	1	ENST00000262189.6:c.5228G>A	p.Arg1743Lys	p.R1743K	ENST00000262189	NM_170606.2	1743	aGa/aAa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139399799	139399799	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013652-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	83	448	1	ENST00000277541.6:c.4549G>A	p.Asp1517Asn	p.D1517N	ENST00000277541	NM_017617.3	1517	Gac/Aac					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16254881	16254881	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	36	588	0	ENST00000375759.3:c.2146G>T	p.Asp716Tyr	p.D716Y	ENST00000375759	NM_015001.2	716	Gac/Tac					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78882673	78882673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013911-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	38	631	0	ENST00000306801.3:c.2464C>T	p.Pro822Ser	p.P822S	ENST00000306801	NM_020761.2	822	Ccc/Tcc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	288	420	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0014225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			508	542	979	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188853	32188853	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs192478549		P-0014225-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	102	586	0	ENST00000375023.3:c.701G>A	p.Arg234Gln	p.R234Q	ENST00000375023	NM_004557.3	234	cGg/cAg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	237	443	2	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			647	371	710	1	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1226552	1226552	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014758-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	427	673	0	ENST00000326873.7:c.1208A>T	p.Lys403Ile	p.K403I	ENST00000326873	NM_000455.4	403	aAa/aTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574017	7574017	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			711	164	526	0	ENST00000269305.4:c.1010G>T	p.Arg337Leu	p.R337L	ENST00000269305	NM_001126112.2	337	cGc/cTc					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554527	63554527	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	113	443	1	ENST00000307078.5:c.212C>T	p.Pro71Leu	p.P71L	ENST00000307078	NM_004655.3	71	cCg/cTg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266136	41266136	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	19	528	0	ENST00000349496.5:c.133T>C	p.Ser45Pro	p.S45P	ENST00000349496	NM_001904.3	45	Tct/Cct					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441252	52441252	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	132	506	0	ENST00000460680.1:c.518A>G	p.Tyr173Cys	p.Y173C	ENST00000460680	NM_004656.3	173	tAt/tGt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46287292	46287292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	79	508	0	ENST00000334344.6:c.5237G>C	p.Arg1746Thr	p.R1746T	ENST00000334344	NM_152641.2	1746	aGa/aCa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380277	+	missense_variant	Missense_Mutation	DNP	TG	TG	GC			P-0014089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	129	534	0	ENST00000256078.4:c.181_182delinsGC	p.Gln61Ala	p.Q61A	ENST00000256078	NM_033360.2	61	CAa/GCa					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30732951	30732951	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	97	425	0	ENST00000359013.4:c.1639G>C	p.Asp547His	p.D547H	ENST00000359013	NM_001024847.2	547	Gac/Cac					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128852146	128852146	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	102	757	0	ENST00000249373.3:c.2218G>T	p.Glu740Ter	p.E740*	ENST00000249373	NM_005631.4	740	Gag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			685	153	440	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	297	649	2	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0014195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			645	110	397	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0014195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	77	324	4	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133234519	133234519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	167	465	0	ENST00000320574.5:c.3313G>A	p.Val1105Met	p.V1105M	ENST00000320574	NM_006231.2	1105	Gtg/Atg					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67482785	67482785	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014195-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	398	525	0	ENST00000327367.4:c.1189G>T	p.Glu397Ter	p.E397*	ENST00000327367	NM_005902.3	397	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	105	365	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	45	183	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577142	7577142	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs1057519990		P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	95	416	0	ENST00000269305.4:c.796G>T	p.Gly266Ter	p.G266*	ENST00000269305	NM_001126112.2	266	Gga/Tga					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162748481	162748481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	44	284	0	ENST00000367921.3:c.2395G>A	p.Glu799Lys	p.E799K	ENST00000367921	NM_006182.2	799	Gag/Aag					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267752	198267752	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	51	277	0	ENST00000335508.6:c.1727T>C	p.Val576Ala	p.V576A	ENST00000335508	NM_012433.2	576	gTg/gCg					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12650768	12650768	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2042	786	403	0	ENST00000251849.4:c.387T>G	p.Asp129Glu	p.D129E	ENST00000251849	NM_002880.3	129	gaT/gaG					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670521	134670521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	109	516	0	ENST00000398015.3:c.432G>T	p.Glu144Asp	p.E144D	ENST00000398015	NM_004441.4	144	gaG/gaT					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187629850	187629850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	84	585	0	ENST00000441802.2:c.1132G>A	p.Glu378Lys	p.E378K	ENST00000441802	NM_005245.3	378	Gaa/Aaa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117718216	117718216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	107	380	0	ENST00000368508.3:c.641G>T	p.Ser214Ile	p.S214I	ENST00000368508	NM_002944.2	214	aGc/aTc					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148525831	148525831	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	73	271	0	ENST00000320356.2:c.625+1G>T		p.X209_splice	ENST00000320356	NM_004456.4	209						NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2156648	2156648	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	118	529	1	ENST00000434045.2:c.274G>A	p.Glu92Lys	p.E92K	ENST00000434045	NM_001127598.1	92	Gag/Aag					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18793363	18793363	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	66	411	0	ENST00000266497.5:c.4060C>T	p.His1354Tyr	p.H1354Y	ENST00000266497		1354	Cat/Tat					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2122875	2122875	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	112	452	1	ENST00000219476.3:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000219476	NM_000548.3	749	cGg/cAg					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2226170	2226170	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	36	376	0	ENST00000326181.6:c.1867C>T	p.Arg623Trp	p.R623W	ENST00000326181	NM_032271.2	623	Cgg/Tgg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89351827	89351827	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1529	125	1170	0	ENST00000301030.4:c.1123A>G	p.Thr375Ala	p.T375A	ENST00000301030	NM_001256183.1	375	Acg/Gcg					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17947944	17947944	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	94	253	0	ENST00000458235.1:c.1780G>T	p.Gly594Ter	p.G594*	ENST00000458235	NM_000215.3	594	Gga/Tga					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45871914	45871914	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	82	508	1	ENST00000391945.4:c.334C>T	p.Arg112Cys	p.R112C	ENST00000391945	NM_000400.3	112	Cgc/Tgc					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426644	47426644	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010199-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	127	296	1	ENST00000377045.4:c.889C>T	p.Arg297Trp	p.R297W	ENST00000377045	NM_001654.4	297	Cgg/Tgg					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81609917	81609917	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010564-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	181	477	0	ENST00000298171.2:c.1515C>A	p.Ser505Arg	p.S505R	ENST00000298171	NM_000369.2	505	agC/agA					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180038349	180038349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001876-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			586	200	480	0	ENST00000261937.6:c.3668G>A	p.Arg1223His	p.R1223H	ENST00000261937	NM_182925.4	1223	cGc/cAc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2134611	2134611	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0001876-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			773	140	501	1	ENST00000219476.3:c.4388T>A	p.Ile1463Asn	p.I1463N	ENST00000219476	NM_000548.3	1463	aTc/aAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	216	559	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578532	7578532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	400	601	0	ENST00000269305.4:c.398T>G	p.Met133Arg	p.M133R	ENST00000269305	NM_001126112.2	133	aTg/aGg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952077	178952077	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	536	572	0	ENST00000263967.3:c.3132T>G	p.Asn1044Lys	p.N1044K	ENST00000263967	NM_006218.2	1044	aaT/aaG					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202141686	202141686	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	85	416	0	ENST00000358485.4:c.974A>T	p.Asp325Val	p.D325V	ENST00000358485	NM_001080125.1	325	gAt/gTt					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1806177	1806177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	181	811	0	ENST00000260795.2:c.1196G>A	p.Arg399His	p.R399H	ENST00000260795		399	cGc/cAc					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131978051	131978051	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	80	377	0	ENST00000265335.6:c.3934C>T	p.His1312Tyr	p.H1312Y	ENST00000265335		1312	Cat/Tat					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573667	48573667	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	113	243	0	ENST00000342988.3:c.249+2T>G		p.X83_splice	ENST00000342988	NM_005359.5	83						NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48953774	48953789	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CATGCTTAAATCAGTA	CATGCTTAAATCAGTA	-			P-0013416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	94	382	0	ENST00000267163.4:c.1377_1389+3del		p.X459_splice	ENST00000267163	NM_000321.2	459						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	249	372	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	51	114	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151864400	151864427	+	frameshift_variant	Frame_Shift_Del	DEL	TGCATTTGAAGCAGCTGTTGGGTCTCCT	TGCATTTGAAGCAGCTGTTGGGTCTCCT	-			P-0010458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	148	307	0	ENST00000262189.6:c.9554_9581del	p.Gln3185ArgfsTer55	p.Q3185Rfs*55	ENST00000262189	NM_170606.2	3185	cAGGAGACCCAACAGCTGCTTCAAATGCAg/cg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0014222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			586	170	480	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	479	664	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc					NEWRECORD																																																																									
CYLD	0	MSKCC	GRCh37	16	50820764	50820764	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0014222-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	56	266	0	ENST00000398568.2:c.1941-2A>T		p.X647_splice	ENST00000398568	NM_001042412.1	647						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	801	804	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175746	112175746	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	147	402	1	ENST00000257430.4:c.4455del	p.Asp1486IlefsTer21	p.D1486Ifs*21	ENST00000257430	NM_000038.5	1485	gcT/gc					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114920422	114920422	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	868	1096	1	ENST00000543371.1:c.1363C>T	p.Arg455Ter	p.R455*	ENST00000543371	NM_001198531.1	455	Cga/Tga					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41962023	41962023	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013982-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	1559	1507	2	ENST00000219905.7:c.931T>G	p.Ser311Ala	p.S311A	ENST00000219905	NM_001164273.1	311	Tca/Gca					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	149	367	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2958169	2958169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			863	218	636	2	ENST00000396946.4:c.2563C>T	p.Arg855Trp	p.R855W	ENST00000396946	NM_032415.4	855	Cgg/Tgg					NEWRECORD																																																																									
KMT2A	4297	MSKCC	GRCh37	11	118344186	118344186	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	157	569	0	ENST00000534358.1:c.2318del	p.Pro773ArgfsTer8	p.P773Rfs*8	ENST00000534358	NM_005933.3	771	aCc/ac					NEWRECORD																																																																									
PIK3C2G	5288	MSKCC	GRCh37	12	18641389	18641389	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1229278001		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	34	235	0	ENST00000266497.5:c.2393del	p.Asn798MetfsTer16	p.N798Mfs*16	ENST00000266497		796	ctA/ct					NEWRECORD																																																																									
GATA3	2625	MSKCC	GRCh37	10	8100728	8100728	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs776668722		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			971	116	676	2	ENST00000346208.3:c.708del	p.Ser237AlafsTer28	p.S237Afs*28	ENST00000346208		234	ttC/tt					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372184	55372184	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			679	83	561	0	ENST00000297316.4:c.874G>A	p.Ala292Thr	p.A292T	ENST00000297316	NM_022454.3	292	Gcc/Acc					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128204842	128204842	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	120	822	0	ENST00000341105.2:c.599del	p.Gly200ValfsTer18	p.G200Vfs*18	ENST00000341105	NM_032638.4	200	gGt/gt					NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50919866	50919866	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	133	645	3	ENST00000440232.2:c.2959del		p.X987_splice	ENST00000440232	NM_002691.3	987						NEWRECORD																																																																									
GLI1	2735	MSKCC	GRCh37	12	57860075	57860075	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs759448855		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1037	166	751	3	ENST00000228682.2:c.821del	p.Gly274AlafsTer6	p.G274Afs*6	ENST00000228682	NM_005269.2	272	tGg/tg					NEWRECORD																																																																									
SETD2	29072	MSKCC	GRCh37	3	47084146	47084146	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			914	99	621	0	ENST00000409792.3:c.7143del	p.Ser2382LeufsTer29	p.S2382Lfs*29	ENST00000409792	NM_014159.6	2381	ccC/cc					NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			928	156	652	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca					NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114925317	114925317	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs745872748		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	211	462	2	ENST00000543371.1:c.1403del	p.Lys468SerfsTer23	p.K468Sfs*23	ENST00000543371	NM_001198531.1	465	agA/ag					NEWRECORD																																																																									
RHOA	387	MSKCC	GRCh37	3	49412946	49412946	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	145	798	1	ENST00000418115.1:c.77G>A	p.Ser26Asn	p.S26N	ENST00000418115	NM_001664.2	26	aGc/aAc					NEWRECORD																																																																									
PTPRT	11122	MSKCC	GRCh37	20	40713414	40713414	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	71	602	0	ENST00000373198.4:c.4101del	p.Ser1368ProfsTer31	p.S1368Pfs*31	ENST00000373198	NM_133170.3	1367	ccC/cc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212812317	212812317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			567	41	369	0	ENST00000342788.4:c.259G>A	p.Val87Met	p.V87M	ENST00000342788	NM_005235.2	87	Gtg/Atg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42052626	42052626	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	111	484	0	ENST00000219905.7:c.7297C>T	p.Arg2433Trp	p.R2433W	ENST00000219905	NM_001164273.1	2433	Cgg/Tgg					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528079	157528079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			704	84	486	0	ENST00000346085.5:c.5804C>T	p.Ala1935Val	p.A1935V	ENST00000346085	NM_020732.3	1935	gCg/gTg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5245949	5245949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	145	780	1	ENST00000357368.4:c.826G>A	p.Val276Met	p.V276M	ENST00000357368	NM_002850.3	276	Gtg/Atg					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12650799	12650799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			804	84	580	1	ENST00000251849.4:c.356C>T	p.Ala119Val	p.A119V	ENST00000251849	NM_002880.3	119	gCg/gTg					NEWRECORD																																																																									
ERF	2077	MSKCC	GRCh37	19	42753368	42753368	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs780487406		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1092	163	785	0	ENST00000222329.4:c.896del	p.Gly299GlufsTer12	p.G299Efs*12	ENST00000222329	NM_006494.2	299	gGa/ga					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106197149	106197149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			527	55	308	0	ENST00000380013.4:c.5482C>T	p.Gln1828Ter	p.Q1828*	ENST00000380013	NM_001127208.2	1828	Cag/Tag					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8074063	8074063	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs190510946		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	73	317	0	ENST00000377482.5:c.596G>A	p.Arg199Gln	p.R199Q	ENST00000377482	NM_018948.3	199	cGa/cAa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105635	27105635	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			669	87	484	0	ENST00000324856.7:c.5246G>T	p.Arg1749Met	p.R1749M	ENST00000324856	NM_006015.4	1749	aGg/aTg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458665	120458665	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	79	532	0	ENST00000256646.2:c.6680A>G	p.His2227Arg	p.H2227R	ENST00000256646	NM_024408.3	2227	cAc/cGc					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156830826	156830826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	115	485	2	ENST00000524377.1:c.100G>A	p.Ala34Thr	p.A34T	ENST00000524377	NM_002529.3	34	Gca/Aca					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49426605	49426606	+	missense_variant	Missense_Mutation	DNP	TT	TT	AA			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			759	107	478	0	ENST00000301067.7:c.11882_11883inv	p.Gln3961Leu	p.Q3961L	ENST00000301067	NM_003482.3	3961	cAA/cTT					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49437555	49437557	+	inframe_deletion	In_Frame_Del	DEL	AAG	AAG	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	97	553	0	ENST00000301067.7:c.5328_5330del	p.Phe1777del	p.F1777del	ENST00000301067	NM_003482.3	1776	ttCTTt/ttt					NEWRECORD																																																																									
BRCA2	675	MSKCC	GRCh37	13	32913436	32913436	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	76	548	0	ENST00000380152.3:c.4948del	p.Ser1650ValfsTer20	p.S1650Vfs*20	ENST00000380152		1648	gcA/gc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32937355	32937355	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			665	75	416	0	ENST00000380152.3:c.8021delA	p.Lys2674ArgfsTer2	p.K2674Rfs*2	ENST00000380152		2672	atA/at					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32937480	32937480	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	132	705	0	ENST00000380152.3:c.8145delA	p.Val2716TrpfsTer17	p.V2716Wfs*17	ENST00000380152		2714	cAa/ca					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2136246	2136246	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	98	597	1	ENST00000219476.3:c.4715C>T	p.Thr1572Met	p.T1572M	ENST00000219476	NM_000548.3	1572	aCg/aTg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72991674	72991674	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200230716		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	71	424	0	ENST00000268489.5:c.2371G>A	p.Gly791Arg	p.G791R	ENST00000268489	NM_006885.3	791	Ggg/Agg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89351069	89351069	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			874	127	671	0	ENST00000301030.4:c.1881del	p.Val628LeufsTer25	p.V628Lfs*25	ENST00000301030	NM_001256183.1	627	aaA/aa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5243989	5243989	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			778	125	599	0	ENST00000357368.4:c.1493C>G	p.Thr498Ser	p.T498S	ENST00000357368	NM_002850.3	498	aCc/aGc					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7117259	7117259	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1116	152	732	0	ENST00000302850.5:c.3957G>T	p.Met1319Ile	p.M1319I	ENST00000302850	NM_000208.2	1319	atG/atT					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11118632	11118632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			951	107	621	0	ENST00000344626.4:c.2056G>A	p.Glu686Lys	p.E686K	ENST00000344626	NM_003072.3	686	Gag/Aag					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15300134	15300134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			973	164	673	0	ENST00000263388.2:c.1142C>T	p.Pro381Leu	p.P381L	ENST00000263388	NM_000435.2	381	cCc/cTc					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17945446	17945446	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	125	721	0	ENST00000458235.1:c.2284T>C	p.Tyr762His	p.Y762H	ENST00000458235	NM_000215.3	762	Tat/Cat					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30303876	30303876	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	128	693	1	ENST00000262643.3:c.116del	p.Leu39CysfsTer36	p.L39Cfs*36	ENST00000262643	NM_001238.2	38	Ttt/tt					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41749573	41749573	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144824336		P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1128	185	785	3	ENST00000301178.4:c.1498G>A	p.Val500Met	p.V500M	ENST00000301178	NM_021913.4	500	Gtg/Atg					NEWRECORD																																																																									
ERF	0	MSKCC	GRCh37	19	42754484	42754484	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			815	114	551	2	ENST00000222329.4:c.256C>T	p.Arg86Cys	p.R86C	ENST00000222329	NM_006494.2	86	Cgc/Tgc					NEWRECORD																																																																									
CENPA	0	MSKCC	GRCh37	2	27015065	27015065	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	111	528	0	ENST00000335756.4:c.167A>C	p.Lys56Thr	p.K56T	ENST00000335756	NM_001809.3	56	aAg/aCg					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47707918	47707918	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	118	555	0	ENST00000233146.2:c.2542G>A	p.Ala848Thr	p.A848T	ENST00000233146	NM_000251.2	848	Gcc/Acc					NEWRECORD																																																																									
TMEM127	0	MSKCC	GRCh37	2	96919767	96919767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	104	583	1	ENST00000258439.3:c.496G>A	p.Gly166Arg	p.G166R	ENST00000258439	NM_001193304.2	166	Gga/Aga					NEWRECORD																																																																									
TMEM127	0	MSKCC	GRCh37	2	96919816	96919816	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	90	518	2	ENST00000258439.3:c.447G>T	p.Trp149Cys	p.W149C	ENST00000258439	NM_001193304.2	149	tgG/tgT					NEWRECORD																																																																									
BCL2L1	0	MSKCC	GRCh37	20	30309790	30309790	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			569	88	452	0	ENST00000307677.4:c.232C>T	p.Arg78Trp	p.R78W	ENST00000307677	NM_138578.1	78	Cgg/Tgg					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46256416	46256416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			968	127	587	0	ENST00000371998.3:c.644C>A	p.Pro215His	p.P215H	ENST00000371998		215	cCt/cAt					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164863	36164863	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1093	148	782	1	ENST00000300305.3:c.1012G>A	p.Ala338Thr	p.A338T	ENST00000300305		338	Gcg/Acg					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37089029	37089030	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			479	131	367	0	ENST00000231790.2:c.1751_1752del	p.Asp584AlafsTer8	p.D584Afs*8	ENST00000231790	NM_000249.3	584	gAC/g					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55956163	55956163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			749	106	546	0	ENST00000263923.4:c.3152G>A	p.Arg1051Gln	p.R1051Q	ENST00000263923	NM_002253.2	1051	cGg/cAg					NEWRECORD																																																																									
TET2	54790	MSKCC	GRCh37	4	106193850	106193850	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			634	89	391	0	ENST00000380013.4:c.4317del	p.Lys1439AsnfsTer9	p.K1439Nfs*9	ENST00000380013	NM_001127208.2	1438	Aaa/aa					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176518768	176518768	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	114	750	0	ENST00000292408.4:c.686C>T	p.Ala229Val	p.A229V	ENST00000292408	NM_213647.1	229	gCt/gTt					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	394890	394890	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			781	93	479	1	ENST00000380956.4:c.286C>T	p.Arg96Cys	p.R96C	ENST00000380956	NM_001195286.1	96	Cgc/Tgc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117715402	117715402	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	85	531	0	ENST00000368508.3:c.1087del	p.Tyr363ThrfsTer6	p.Y363Tfs*6	ENST00000368508	NM_002944.2	363	Tac/ac					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341817	8341817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014994-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			869	96	592	0	ENST00000356435.5:c.4823C>T	p.Ala1608Val	p.A1608V	ENST00000356435		1608	gCa/gTa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56178002	56178002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	631	619	0	ENST00000399503.3:c.2975C>G	p.Ser992Cys	p.S992C	ENST00000399503	NM_005921.1	992	tCt/tGt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48881511	48881511	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	493	475	0	ENST00000267163.4:c.233G>A	p.Trp78Ter	p.W78*	ENST00000267163	NM_000321.2	78	tGg/tAg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10032402	10032402	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	96	169	0	ENST00000330684.3:c.421A>G	p.Thr141Ala	p.T141A	ENST00000330684	NM_001134407.1	141	Acg/Gcg					NEWRECORD																																																																									
DNAJB1	0	MSKCC	GRCh37	19	14627766	14627766	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1885	984	867	0	ENST00000254322.2:c.304T>C	p.Phe102Leu	p.F102L	ENST00000254322	NM_006145.1	102	Ttt/Ctt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577510	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	-			P-0012531-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	682	499	1	ENST00000269305.4:c.771_772del	p.Glu258ArgfsTer5	p.E258Rfs*5	ENST00000269305	NM_001126112.2	257	ctGGaa/ctaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	884	1078	6	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112137082	112137082	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0013375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	190	490	0	ENST00000257430.4:c.834+2T>C		p.X278_splice	ENST00000257430	NM_000038.5	278						NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100933200	100933202	+	inframe_deletion	In_Frame_Del	DEL	GAC	GAC	-			P-0013375-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	465	1135	3	ENST00000325455.5:c.2188_2190del	p.Val730del	p.V730del	ENST00000325455	NM_001202474.3	730	GTC/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	97	270	0	ENST00000269305.4:c.559+1G>T		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72831953	72831953	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1510	161	798	2	ENST00000268489.5:c.4628G>A	p.Arg1543His	p.R1543H	ENST00000268489	NM_006885.3	1543	cGc/cAc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023895	27023895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	24	95	0	ENST00000324856.7:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000324856	NM_006015.4	334	tCg/tTg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47147549	47147549	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	135	417	1	ENST00000409792.3:c.4777G>T	p.Val1593Leu	p.V1593L	ENST00000409792	NM_014159.6	1593	Gtg/Ttg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11169554	11169554	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	343	424	0	ENST00000344626.4:c.4624G>T	p.Glu1542Ter	p.E1542*	ENST00000344626	NM_003072.3	1542	Gag/Tag					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1331503	1331503	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	77	454	0	ENST00000381566.1:c.25G>T	p.Gly9Ter	p.G9*	ENST00000381566		9	Gga/Tga					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123200098	123200098	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010172-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	91	644	0	ENST00000218089.9:c.2170G>C	p.Asp724His	p.D724H	ENST00000218089	NM_001042749.1	724	Gac/Cac					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012992-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	117	547	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	108	534	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577097	7577097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	123	680	0	ENST00000269305.4:c.841G>A	p.Asp281Asn	p.D281N	ENST00000269305	NM_001126112.2	281	Gac/Aac					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48586262	48586262	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	119	451	0	ENST00000342988.3:c.931C>T	p.Gln311Ter	p.Q311*	ENST00000342988	NM_005359.5	311	Cag/Tag					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157098	106157098	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	148	733	0	ENST00000380013.4:c.1999C>T	p.His667Tyr	p.H667Y	ENST00000380013	NM_001127208.2	667	Cat/Tat					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176665281	176665281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	136	578	0	ENST00000439151.2:c.3965G>A	p.Arg1322Gln	p.R1322Q	ENST00000439151	NM_022455.4	1322	cGa/cAa					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056434	26056434	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	117	269	0	ENST00000343677.2:c.223A>G	p.Lys75Glu	p.K75E	ENST00000343677	NM_005319.3	75	Aaa/Gaa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221290	1221307	+	inframe_deletion	In_Frame_Del	DEL	CTACGCCATCCCGGGCGA	CTACGCCATCCCGGGCGA	-			P-0013456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	152	698	1	ENST00000326873.7:c.815_832del	p.Tyr272_Asp277del	p.Y272_D277del	ENST00000326873	NM_000455.4	271	agCTACGCCATCCCGGGCGAc/agc					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36231774	36231774	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	8	435	1	ENST00000300305.3:c.610C>T	p.Arg204Ter	p.R204*	ENST00000300305		204	Cga/Tga					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624246	89624263	+	inframe_deletion	In_Frame_Del	DEL	AGATCGTTAGCAGAAACA	AGATCGTTAGCAGAAACA	-			P-0013957-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	18	86	0	ENST00000371953.3:c.21_38del	p.Ile8_Lys13del	p.I8_K13del	ENST00000371953	NM_000314.4	7	gAGATCGTTAGCAGAAACAaa/gaa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0014119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	137	425	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114920413	114920413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	586	894	2	ENST00000543371.1:c.1354G>A	p.Gly452Arg	p.G452R	ENST00000543371	NM_001198531.1	452	Ggg/Agg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039817	47039817	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0014119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	538	879	0	ENST00000329236.7:c.927-1G>A		p.X309_splice	ENST00000329236	NM_001204466.1	309						NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	192	591	1	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022681	31022681	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	276	528	0	ENST00000375687.4:c.2167del	p.Ser723LeufsTer2	p.S723Lfs*2	ENST00000375687	NM_015338.5	722	ccT/cc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	35	321	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149893	202149893	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	675	482	0	ENST00000358485.4:c.1334C>G	p.Ser445Ter	p.S445*	ENST00000358485	NM_001080125.1	445	tCa/tGa					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202150039	202150039	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0010760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	577	340	0	ENST00000358485.4:c.1480C>T	p.Arg494Ter	p.R494*	ENST00000358485	NM_001080125.1	494	Cga/Tga					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117714396	117714396	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0010760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	69	465	0	ENST00000368508.3:c.1253C>G	p.Ser418Ter	p.S418*	ENST00000368508	NM_002944.2	418	tCa/tGa					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128750863	128750863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2910	1636	545	0	ENST00000377970.2:c.400C>G	p.Pro134Ala	p.P134A	ENST00000377970	NM_002467.4	134	Ccg/Gcg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	154	705	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013565-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	207	570	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	79	630	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1218492	1218492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	141	619	0	ENST00000326873.7:c.367C>T	p.Gln123Ter	p.Q123*	ENST00000326873	NM_000455.4	123	Cag/Tag					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591248	67591248	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	75	570	0	ENST00000274335.5:c.1746G>A	p.Met582Ile	p.M582I	ENST00000274335		582	atG/atA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	169	448	2	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187557230	187557230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	114	590	1	ENST00000441802.2:c.4132G>A	p.Gly1378Arg	p.G1378R	ENST00000441802	NM_005245.3	1378	Gga/Aga					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098593	11098593	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	134	454	0	ENST00000344626.4:c.1111G>T	p.Glu371Ter	p.E371*	ENST00000344626	NM_003072.3	371	Gag/Tag					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128204944	128204944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	168	586	1	ENST00000341105.2:c.497C>A	p.Ser166Tyr	p.S166Y	ENST00000341105	NM_032638.4	166	tCt/tAt					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142232481	142232481	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	89	380	0	ENST00000350721.4:c.4504-1G>T		p.X1502_splice	ENST00000350721	NM_001184.3	1502						NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86564776	86564776	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	199	623	0	ENST00000274376.6:c.508G>T	p.Ala170Ser	p.A170S	ENST00000274376	NM_002890.2	170	Gcc/Tcc					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467823	50467823	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	132	403	0	ENST00000331340.3:c.1058C>A	p.Pro353Gln	p.P353Q	ENST00000331340	NM_006060.4	353	cCg/cAg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55268959	55268959	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	243	556	0	ENST00000275493.2:c.3025G>T	p.Asp1009Tyr	p.D1009Y	ENST00000275493	NM_005228.3	1009	Gac/Tac					NEWRECORD																																																																									
PPP6C	0	MSKCC	GRCh37	9	127951970	127951970	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	95	564	0	ENST00000373547.4:c.28G>A	p.Val10Met	p.V10M	ENST00000373547	NM_002721.4	10	Gtg/Atg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685277	89685277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	70	208	1	ENST00000371953.3:c.172G>T	p.Asp58Tyr	p.D58Y	ENST00000371953	NM_000314.4	58	Gat/Tat					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32439140	32439140	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	213	537	0	ENST00000332351.3:c.933A>C	p.Leu311Phe	p.L311F	ENST00000332351	NM_024426.4	311	ttA/ttC					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32953574	32953574	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	331	816	0	ENST00000380152.3:c.8875G>T	p.Glu2959Ter	p.E2959*	ENST00000380152		2959	Gaa/Taa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857288	9857288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	113	570	0	ENST00000330684.3:c.4113C>A	p.His1371Gln	p.H1371Q	ENST00000330684	NM_001134407.1	1371	caC/caA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578499	7578499	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	105	510	0	ENST00000269305.4:c.431A>T	p.Gln144Leu	p.Q144L	ENST00000269305	NM_001126112.2	144	cAg/cTg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29687716	29687716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	89	399	0	ENST00000358273.4:c.8372C>T	p.Ser2791Phe	p.S2791F	ENST00000358273	NM_001042492.2	2791	tCc/tTc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221228	1221228	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	232	657	1	ENST00000326873.7:c.751G>T	p.Gly251Cys	p.G251C	ENST00000326873	NM_000455.4	251	Ggt/Tgt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610286	10610286	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	198	558	0	ENST00000171111.5:c.424A>G	p.Thr142Ala	p.T142A	ENST00000171111	NM_203500.1	142	Acg/Gcg					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29108001	29108001	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	87	484	0	ENST00000328354.6:c.688G>C	p.Ala230Pro	p.A230P	ENST00000328354	NM_007194.3	230	Gcc/Ccc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039420	47039420	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	184	540	0	ENST00000329236.7:c.812T>G	p.Ile271Ser	p.I271S	ENST00000329236	NM_001204466.1	271	aTc/aGc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42793118	42793126	+	inframe_deletion	In_Frame_Del	DEL	GGGCAGAAC	GGGCAGAAC	-			P-0011333-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	126	473	0	ENST00000575354.2:c.1012_1020del	p.Ala338_Arg340del	p.A338_R340del	ENST00000575354	NM_015125.3	337	gGGGCAGAACgg/ggg					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245404	153245404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	172	328	0	ENST00000281708.4:c.1787C>T	p.Ser596Phe	p.S596F	ENST00000281708	NM_033632.3	596	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	60	353	0	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	26	160	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151873888	151873888	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	62	405	0	ENST00000262189.6:c.8650C>T	p.Arg2884Ter	p.R2884*	ENST00000262189	NM_170606.2	2884	Cga/Tga					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117864937	117864937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	141	334	0	ENST00000297338.2:c.1172G>T	p.Arg391Leu	p.R391L	ENST00000297338	NM_006265.2	391	cGc/cTc					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98212167	98212167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	50	335	0	ENST00000331920.6:c.3505G>A	p.Val1169Ile	p.V1169I	ENST00000331920	NM_000264.3	1169	Gtt/Att					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554545	63554545	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	47	340	0	ENST00000307078.5:c.194C>G	p.Pro65Arg	p.P65R	ENST00000307078	NM_004655.3	65	cCg/cGg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174038	112174038	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012033-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	31	248	0	ENST00000257430.4:c.2747del	p.Thr916LysfsTer39	p.T916Kfs*39	ENST00000257430	NM_000038.5	916	aCa/aa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	45	521	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			973	51	522	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044595	47044595	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	43	392	2	ENST00000329236.7:c.1858G>T	p.Glu620Ter	p.E620*	ENST00000329236	NM_001204466.1	620	Gag/Tag					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162745576	162745576	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013767-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1167	68	707	0	ENST00000367921.3:c.1991A>C	p.Gln664Pro	p.Q664P	ENST00000367921	NM_006182.2	664	cAg/cCg					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11984728	11984728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	118	261	1	ENST00000353533.5:c.274G>A	p.Glu92Lys	p.E92K	ENST00000353533	NM_003010.3	92	Gaa/Aaa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575066	48575071	+	inframe_deletion	In_Frame_Del	DEL	GGAAAG	GGAAAG	-			P-0012117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	220	622	1	ENST00000342988.3:c.261_266del	p.Lys88_Gly89del	p.K88_G89del	ENST00000342988	NM_005359.5	87	cGGAAAGga/cga					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287485	33287485	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	204	514	0	ENST00000374542.5:c.1612del	p.Leu538TrpfsTer6	p.L538Wfs*6	ENST00000374542	NM_001141970.1	538	Ctg/tg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	98	1013	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8500886	8500886	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	41	705	0	ENST00000356435.5:c.1996C>T	p.Pro666Ser	p.P666S	ENST00000356435		666	Cct/Tct					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	29	337	1	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366						NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295228	1295229	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0013481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	13	157	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CDK6	0	MSKCC	GRCh37	7	92300791	92300791	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	38	403	0	ENST00000265734.4:c.596C>T	p.Pro199Leu	p.P199L	ENST00000265734	NM_001259.6	199	cCc/cTc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593603	55593603	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	67	824	0	ENST00000288135.5:c.1669T>A	p.Trp557Arg	p.W557R	ENST00000288135	NM_000222.2	557	Tgg/Agg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16257107	16257107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	55	596	1	ENST00000375759.3:c.4372C>T	p.Arg1458Cys	p.R1458C	ENST00000375759	NM_015001.2	1458	Cgt/Tgt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187539639	187539639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	65	755	0	ENST00000441802.2:c.8101C>T	p.Pro2701Ser	p.P2701S	ENST00000441802	NM_005245.3	2701	Cca/Tca					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187629463	187629463	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	68	644	2	ENST00000441802.2:c.1519C>T	p.His507Tyr	p.H507Y	ENST00000441802	NM_005245.3	507	Cat/Tat					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29562935	29562935	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	71	779	0	ENST00000358273.4:c.3871-1G>A		p.X1291_splice	ENST00000358273	NM_001042492.2	1291						NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58725388	58725388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1312	86	1025	1	ENST00000305921.3:c.962C>T	p.Pro321Leu	p.P321L	ENST00000305921	NM_003620.3	321	cCa/cTa					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138192659	138192659	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	G	G	-			P-0013481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	34	394	0	ENST00000237289.4:c.295+1del		p.G99fs	ENST00000237289	NM_001270507.1	99	Ggt/gt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174901	112174901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	201	589	0	ENST00000257430.4:c.3610C>T	p.Gln1204Ter	p.Q1204*	ENST00000257430	NM_000038.5	1204	Caa/Taa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	270	727	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911575	32911575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1348	461	908	0	ENST00000380152.3:c.3083A>G	p.Lys1028Arg	p.K1028R	ENST00000380152		1028	aAa/aGa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88670412	88670412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	282	637	0	ENST00000360948.2:c.1274C>T	p.Pro425Leu	p.P425L	ENST00000360948	NM_001012338.2	425	cCa/cTa					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760143	133760145	+	inframe_deletion	In_Frame_Del	DEL	CAC	CAC	-			P-0010237-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	207	579	0	ENST00000318560.5:c.2467_2469del	p.Thr823del	p.T823del	ENST00000318560	NM_005157.4	822	gtCACc/gtc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212812293	212812293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			379	121	427	0	ENST00000342788.4:c.283C>T	p.Arg95Cys	p.R95C	ENST00000342788	NM_005235.2	95	Cgt/Tgt					NEWRECORD																																																																									
VHL	7428	MSKCC	GRCh37	3	10183765	10183765	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012364-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	82	314	0	ENST00000256474.2:c.234T>A	p.Asn78Lys	p.N78K	ENST00000256474	NM_000551.3	78	aaT/aaA					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52439292	52439292	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	165	383	0	ENST00000460680.1:c.950C>G	p.Ala317Gly	p.A317G	ENST00000460680	NM_004656.3	317	gCt/gGt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630229	187630229	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	65	385	0	ENST00000441802.2:c.753T>A	p.Asn251Lys	p.N251K	ENST00000441802	NM_005245.3	251	aaT/aaA					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738713	145738713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	112	401	0	ENST00000428558.2:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000428558	NM_004260.3	784	cGg/cAg					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	532697	532697	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	43	721	0	ENST00000311189.7:c.509A>C	p.Lys170Thr	p.K170T	ENST00000311189		170	aAg/aCg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0011414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	170	440	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176639094	176639094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	108	274	0	ENST00000439151.2:c.3694C>A	p.Pro1232Thr	p.P1232T	ENST00000439151	NM_022455.4	1232	Cca/Aca					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49428261	49428261	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0011414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	236	523	0	ENST00000301067.7:c.10441-2A>T		p.X3481_splice	ENST00000301067	NM_003482.3	3481						NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103519140	103519140	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	12	333	0	ENST00000355739.4:c.2478T>A	p.Phe826Leu	p.F826L	ENST00000355739	NM_000123.3	826	ttT/ttA					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022478	31022478	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	56	228	0	ENST00000375687.4:c.1963A>G	p.Thr655Ala	p.T655A	ENST00000375687	NM_015338.5	655	Acc/Gcc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49439877	49439878	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0011414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	329	528	0	ENST00000301067.7:c.4663_4664del	p.Ser1555LeufsTer47	p.S1555Lfs*47	ENST00000301067	NM_003482.3	1555	TCc/c					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610065	81610090	+	protein_altering_variant	In_Frame_Del	DEL	CTTCCTTTGGTGGGAATAAGTAGCTA	CTTCCTTTGGTGGGAATAAGTAGCTA	TCAGTATC			P-0011414-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	171	460	0	ENST00000298171.2:c.1663_1688delinsTCAGTATC	p.Leu555_Tyr563delinsSerValSer	p.L555_Y563delinsSVS	ENST00000298171	NM_000369.2	555	CTTCCTTTGGTGGGAATAAGTAGCTAt/TCAGTATCt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1240	41	657	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578552	7578552	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0012283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	29	522	0	ENST00000269305.4:c.378C>G	p.Tyr126Ter	p.Y126*	ENST00000269305	NM_001126112.2	126	taC/taG					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	55	616	0	ENST00000347630.2:c.399C>G	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579329	7579329	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014527-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	63	692	0	ENST00000269305.4:c.358A>G	p.Lys120Glu	p.K120E	ENST00000269305	NM_001126112.2	120	Aag/Gag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	56	525	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0012569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	73	214	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	10	237	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241680489	241680489	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	51	481	0	ENST00000366560.3:c.260G>T	p.Arg87Leu	p.R87L	ENST00000366560	NM_000143.3	87	cGc/cTc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76814258	76814258	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	66	763	1	ENST00000373344.5:c.6386C>A	p.Ala2129Asp	p.A2129D	ENST00000373344	NM_000489.3	2129	gCt/gAt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123164907	123164907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012569-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1194	73	820	0	ENST00000218089.9:c.220C>T	p.His74Tyr	p.H74Y	ENST00000218089	NM_001042749.1	74	Cac/Tac					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624274	89624274	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	14	273	0	ENST00000371953.3:c.48T>A	p.Tyr16Ter	p.Y16*	ENST00000371953	NM_000314.4	16	taT/taA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49437694	49437694	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	261	942	4	ENST00000301067.7:c.5276G>A	p.Arg1759His	p.R1759H	ENST00000301067	NM_003482.3	1759	cGc/cAc					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16082317	16082317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	46	418	0	ENST00000281043.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000281043	NM_005378.4	44	cCc/cTc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	164	246	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27059260	27059260	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	208	400	0	ENST00000324856.7:c.1897C>T	p.Gln633Ter	p.Q633*	ENST00000324856	NM_006015.4	633	Cag/Tag					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11259397	11259397	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	172	400	0	ENST00000361445.4:c.4171C>G	p.Arg1391Gly	p.R1391G	ENST00000361445	NM_004958.3	1391	Cga/Gga					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56414887	56414887	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0011224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	130	528	0	ENST00000348428.3:c.2288C>G	p.Ser763Ter	p.S763*	ENST00000348428	NM_006785.3	763	tCa/tGa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49448504	49448505	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0011224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	115	381	0	ENST00000301067.7:c.206_207del	p.Cys69Ter	p.C69*	ENST00000301067	NM_003482.3	69	tGT/t					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591138	67591150	+	protein_altering_variant,splice_region_variant	In_Frame_Del	DEL	AGACCAATACTTG	AGACCAATACTTG	TATT			P-0011224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	66	271	0	ENST00000274335.5:c.1731_1743delinsTATT	p.Arg577_Leu581delinsSerIle	p.R577_L581delinsSI	ENST00000274335		577	agAGACCAATACTTG/agTATT					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138665213	138665213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	32	677	0	ENST00000330315.3:c.352G>A	p.Glu118Lys	p.E118K	ENST00000330315	NM_023067.3	118	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	43	692	2	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42796616	42796616	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	G			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	15	219	0	ENST00000575354.2:c.3173C>G	p.Ser1058Ter	p.S1058*	ENST00000575354	NM_015125.3	1058	tCa/tGa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412639	139412639	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	19	531	2	ENST00000277541.6:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000277541	NM_017617.3	402	tCg/tTg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29551339	29551339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	25	481	0	ENST00000389048.3:c.1291C>A	p.Pro431Thr	p.P431T	ENST00000389048	NM_004304.4	431	Cca/Aca					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098809	178098809	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	51	715	0	ENST00000397062.3:c.236A>T	p.Glu79Val	p.E79V	ENST00000397062	NM_006164.4	79	gAg/gTg					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187446859	187446859	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	21	499	0	ENST00000232014.4:c.1334G>T	p.Arg445Leu	p.R445L	ENST00000232014	NM_001130845.1	445	cGg/cTg					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38962977	38962977	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	24	299	0	ENST00000357387.3:c.1566+1G>T		p.X522_splice	ENST00000357387	NM_152756.3	522						NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056554	26056554	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			97	31	171	0	ENST00000343677.2:c.103G>T	p.Ala35Ser	p.A35S	ENST00000343677	NM_005319.3	35	Gcg/Tcg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151864386	151864386	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	19	471	0	ENST00000262189.6:c.9595G>C	p.Glu3199Gln	p.E3199Q	ENST00000262189	NM_170606.2	3199	Gaa/Caa					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5123018	5123018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	28	383	0	ENST00000381652.3:c.3074C>T	p.Ser1025Leu	p.S1025L	ENST00000381652	NM_004972.3	1025	tCa/tTa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518261	8518261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	38	432	0	ENST00000356435.5:c.1130G>T	p.Arg377Leu	p.R377L	ENST00000356435		377	cGc/cTc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118376938	118376938	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	24	458	1	ENST00000534358.1:c.10331C>T	p.Ser3444Leu	p.S3444L	ENST00000534358	NM_005933.3	3444	tCa/tTa					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95562665	95562665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	21	427	0	ENST00000343455.3:c.4592C>T	p.Ser1531Leu	p.S1531L	ENST00000343455	NM_177438.2	1531	tCa/tTa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2124222	2124222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	17	490	0	ENST00000219476.3:c.2377G>A	p.Glu793Lys	p.E793K	ENST00000219476	NM_000548.3	793	Gag/Aag					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220384	1220393	+	frameshift_variant	Frame_Shift_Del	DEL	GCTGATTGAC	GCTGATTGAC	-			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	63	519	0	ENST00000326873.7:c.478_487del	p.Leu160AlafsTer124	p.L160Afs*124	ENST00000326873	NM_000455.4	159	caGCTGATTGAC/ca					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039328	47039328	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013459-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	42	709	0	ENST00000329236.7:c.724del	p.Ala242ProfsTer16	p.A242Pfs*16	ENST00000329236	NM_001204466.1	240	ctG/ct					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162688926	162688926	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	116	629	1	ENST00000367921.3:c.73G>T	p.Val25Phe	p.V25F	ENST00000367921	NM_006182.2	25	Gtt/Ttt					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25982481	25982481	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	110	632	0	ENST00000435504.4:c.809A>T	p.Asp270Val	p.D270V	ENST00000435504		270	gAc/gTc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89390106	89390106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	110	634	1	ENST00000336596.2:c.855G>A	p.Met285Ile	p.M285I	ENST00000336596	NM_005233.5	285	atG/atA					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35873704	35873704	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	89	650	0	ENST00000303115.3:c.660G>T	p.Trp220Cys	p.W220C	ENST00000303115	NM_002185.3	220	tgG/tgT					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56111429	56111429	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	79	480	0	ENST00000399503.3:c.29C>T	p.Ser10Leu	p.S10L	ENST00000399503	NM_005921.1	10	tCg/tTg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8504263	8504263	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0013351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	102	581	0	ENST00000356435.5:c.1820C>G	p.Ser607Ter	p.S607*	ENST00000356435		607	tCa/tGa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207204	1207204	+	splice_donor_variant	Splice_Site	SNP	T	T	G	rs112235354		P-0013351-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	101	483	0	ENST00000326873.7:c.290+2T>G		p.X97_splice	ENST00000326873	NM_000455.4	97						NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952006	178952006	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	30	639	0	ENST00000263967.3:c.3061T>C	p.Tyr1021His	p.Y1021H	ENST00000263967	NM_006218.2	1021	Tac/Cac					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148508728	148508728	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	11	721	0	ENST00000320356.2:c.1936T>C	p.Tyr646His	p.Y646H	ENST00000320356	NM_004456.4	646	Tac/Cac					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0013562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	34	956	2	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53226171	53226171	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	29	607	0	ENST00000375401.3:c.2678C>T	p.Ser893Leu	p.S893L	ENST00000375401	NM_004187.3	893	tCa/tTa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	185	291	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
EP300	2033	MSKCC	GRCh37	22	41565529	41565529	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519889		P-0012862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	499	623	3	ENST00000263253.7:c.4195G>A	p.Asp1399Asn	p.D1399N	ENST00000263253	NM_001429.3	1399	Gat/Aat					NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	504	657	1	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102195371	102195371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	768	981	1	ENST00000263464.3:c.131C>T	p.Pro44Leu	p.P44L	ENST00000263464	NM_001165.4	44	cCt/cTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	63	497	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593397	48593397	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	45	329	0	ENST00000342988.3:c.1148T>A	p.Ile383Lys	p.I383K	ENST00000342988	NM_005359.5	383	aTa/aAa					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20156719	20156719	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	141	298	0	ENST00000379607.5:c.38G>T	p.Arg13Leu	p.R13L	ENST00000379607	NM_001412.3	13	cGc/cTc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061231	38061231	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	169	501	1	ENST00000250448.2:c.758T>A	p.Met253Lys	p.M253K	ENST00000250448	NM_004496.3	253	aTg/aAg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162746132	162746132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	127	460	0	ENST00000367921.3:c.2255G>A	p.Arg752His	p.R752H	ENST00000367921	NM_006182.2	752	cGc/cAc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142231257	142231257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	140	609	1	ENST00000350721.4:c.4697C>A	p.Thr1566Asn	p.T1566N	ENST00000350721	NM_001184.3	1566	aCc/aAc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72829606	72829612	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGCTT	GTTGCTT	-			P-0011046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	55	886	0	ENST00000268489.5:c.6969_6975del	p.Ser2324Ter	p.S2324*	ENST00000268489	NM_006885.3	2323	acAAGCAAC/ac					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0013270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1505	1271	759	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108186599	108186599	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	393	658	0	ENST00000278616.4:c.6056A>G	p.Tyr2019Cys	p.Y2019C	ENST00000278616	NM_000051.3	2019	tAt/tGt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66361199	66361199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	218	641	2	ENST00000273854.3:c.973C>T	p.His325Tyr	p.H325Y	ENST00000273854	NM_004439.5	325	Cac/Tac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	50	528	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	97	335	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	143	615	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0013300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	178	657	0	ENST00000269305.4:c.993+1G>C		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176962	112176962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	93	563	0	ENST00000257430.4:c.5671G>A	p.Glu1891Lys	p.E1891K	ENST00000257430	NM_000038.5	1891	Gag/Aag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266086	41266304	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAA	AGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGGTAAGAGTATTATTTTTCATTGCCTTACTGAAAGTCAGAATGCAGTTTTGAGAACTAAAA	-			P-0013300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	184	713	0	ENST00000349496.5:c.86_241+63del		p.X29_splice	ENST00000349496	NM_001904.3	29						NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	34	247	0	ENST00000263967.3:c.1637A>C	p.Gln546Pro	p.Q546P	ENST00000263967	NM_006218.2	546	cAg/cCg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	111	518	1	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	45	302	2	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47127699	47127699	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	27	362	0	ENST00000409792.3:c.5383A>T	p.Lys1795Ter	p.K1795*	ENST00000409792	NM_014159.6	1795	Aag/Tag					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153251922	153251922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010345-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	94	773	0	ENST00000281708.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000281708	NM_033632.3	362	Gat/Aat					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8073432	8073432	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1292	136	876	0	ENST00000377482.5:c.1227A>C	p.Lys409Asn	p.K409N	ENST00000377482	NM_018948.3	409	aaA/aaC					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16237721	16237721	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	62	417	0	ENST00000375759.3:c.1168G>T	p.Glu390Ter	p.E390*	ENST00000375759	NM_015001.2	390	Gaa/Taa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16257860	16257860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	35	216	0	ENST00000375759.3:c.5125G>A	p.Asp1709Asn	p.D1709N	ENST00000375759	NM_015001.2	1709	Gat/Aat					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16258728	16258728	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	68	438	1	ENST00000375759.3:c.5993A>T	p.Lys1998Ile	p.K1998I	ENST00000375759	NM_015001.2	1998	aAa/aTa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16265829	16265829	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			857	80	602	0	ENST00000375759.3:c.10902C>A	p.Phe3634Leu	p.F3634L	ENST00000375759	NM_015001.2	3634	ttC/ttA					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105547	27105547	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	75	545	0	ENST00000324856.7:c.5158T>G	p.Phe1720Val	p.F1720V	ENST00000324856	NM_006015.4	1720	Ttc/Gtc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105617	27105617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	89	562	1	ENST00000324856.7:c.5228C>T	p.Thr1743Met	p.T1743M	ENST00000324856	NM_006015.4	1743	aCg/aTg					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43812205	43812205	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	119	661	0	ENST00000372470.3:c.1070G>A	p.Arg357Gln	p.R357Q	ENST00000372470	NM_005373.2	357	cGa/cAa					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45795028	45795028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	84	557	0	ENST00000372115.3:c.1558C>T	p.Arg520Trp	p.R520W	ENST00000372115	NM_001048171.1	520	Cgg/Tgg					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46509445	46509445	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	50	438	0	ENST00000262741.5:c.1286T>C	p.Val429Ala	p.V429A	ENST00000262741	NM_003629.3	429	gTg/gCg					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46726651	46726651	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	47	389	0	ENST00000371975.4:c.730G>A	p.Asp244Asn	p.D244N	ENST00000371975	NM_003579.3	244	Gat/Aat					NEWRECORD																																																																									
RIT1	0	MSKCC	GRCh37	1	155874286	155874286	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	42	366	0	ENST00000368323.3:c.245T>G	p.Phe82Cys	p.F82C	ENST00000368323	NM_006912.5	82	tTt/tGt					NEWRECORD																																																																									
IL10	0	MSKCC	GRCh37	1	206943240	206943240	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	63	329	0	ENST00000423557.1:c.379-1G>T		p.X127_splice	ENST00000423557	NM_000572.2	127						NEWRECORD																																																																									
H3F3A	0	MSKCC	GRCh37	1	226253512	226253512	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	73	633	0	ENST00000366813.1:c.282+2T>C		p.X94_splice	ENST00000366813		94						NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243708816	243708816	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	60	420	0	ENST00000263826.5:c.1247A>C	p.Lys416Thr	p.K416T	ENST00000263826	NM_005465.4	416	aAa/aCa					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29606679	29606679	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	64	492	0	ENST00000389048.3:c.1201C>T	p.Arg401Ter	p.R401*	ENST00000389048	NM_004304.4	401	Cga/Tga					NEWRECORD																																																																									
MSH6	2956	MSKCC	GRCh37	2	48033396	48033396	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	82	465	0	ENST00000234420.5:c.3700G>T	p.Glu1234Ter	p.E1234*	ENST00000234420	NM_000179.2	1234	Gaa/Taa					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48033767	48033767	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	47	400	2	ENST00000234420.5:c.3978G>T	p.Met1326Ile	p.M1326I	ENST00000234420	NM_000179.2	1326	atG/atT					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61121582	61121582	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	49	380	0	ENST00000295025.8:c.204G>T	p.Lys68Asn	p.K68N	ENST00000295025	NM_002908.2	68	aaG/aaT					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61149660	61149660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	21	104	0	ENST00000295025.8:c.1850T>G	p.Phe617Cys	p.F617C	ENST00000295025	NM_002908.2	617	tTt/tGt					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128038082	128038082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	87	470	0	ENST00000285398.2:c.1468G>A	p.Glu490Lys	p.E490K	ENST00000285398	NM_000122.1	490	Gaa/Aaa					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128038127	128038127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	87	440	0	ENST00000285398.2:c.1423G>T	p.Asp475Tyr	p.D475Y	ENST00000285398	NM_000122.1	475	Gac/Tac					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190670480	190670480	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	35	336	0	ENST00000441310.2:c.418G>A	p.Gly140Ser	p.G140S	ENST00000441310	NM_000534.4	140	Ggt/Agt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267694	198267694	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	63	311	0	ENST00000335508.6:c.1785G>T	p.Glu595Asp	p.E595D	ENST00000335508	NM_012433.2	595	gaG/gaT					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198273266	198273266	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	70	418	0	ENST00000335508.6:c.944G>A	p.Arg315Gln	p.R315Q	ENST00000335508	NM_012433.2	315	cGa/cAa					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198281544	198281544	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	84	555	0	ENST00000335508.6:c.587G>A	p.Arg196Gln	p.R196Q	ENST00000335508	NM_012433.2	196	cGa/cAa					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198285173	198285173	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	73	448	0	ENST00000335508.6:c.394C>T	p.Arg132Cys	p.R132C	ENST00000335508	NM_012433.2	132	Cgt/Tgt					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202131412	202131412	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	60	413	0	ENST00000358485.4:c.380G>A	p.Arg127Gln	p.R127Q	ENST00000358485	NM_001080125.1	127	cGa/cAa					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212295800	212295800	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	64	444	3	ENST00000342788.4:c.2513G>A	p.Arg838Gln	p.R838Q	ENST00000342788	NM_005235.2	838	cGa/cAa					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225342954	225342954	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	88	564	1	ENST00000264414.4:c.2138C>A	p.Ser713Tyr	p.S713Y	ENST00000264414	NM_003590.4	713	tCt/tAt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30691768	30691768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	59	437	1	ENST00000359013.4:c.345G>T	p.Lys115Asn	p.K115N	ENST00000359013	NM_001024847.2	115	aaG/aaT					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41277233	41277233	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	66	384	0	ENST00000349496.5:c.1702G>A	p.Glu568Lys	p.E568K	ENST00000349496	NM_001904.3	568	Gaa/Aaa					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70008548	70008548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	66	303	0	ENST00000352241.4:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000352241	NM_198159.2	380	Cgg/Tgg					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70014371	70014371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1097	92	752	0	ENST00000352241.4:c.1535G>T	p.Ser512Ile	p.S512I	ENST00000352241	NM_198159.2	512	aGc/aTc					NEWRECORD																																																																									
SHQ1	0	MSKCC	GRCh37	3	72842110	72842110	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	67	326	0	ENST00000325599.8:c.1138G>T	p.Asp380Tyr	p.D380Y	ENST00000325599	NM_018130.2	380	Gat/Tat					NEWRECORD																																																																									
SHQ1	0	MSKCC	GRCh37	3	72866425	72866425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	74	421	0	ENST00000325599.8:c.838C>A	p.Leu280Met	p.L280M	ENST00000325599	NM_018130.2	280	Ctg/Atg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670431	134670431	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	43	378	0	ENST00000398015.3:c.342C>A	p.Tyr114Ter	p.Y114*	ENST00000398015	NM_004441.4	114	taC/taA					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134968251	134968251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			696	56	572	0	ENST00000398015.3:c.2764G>A	p.Ala922Thr	p.A922T	ENST00000398015	NM_004441.4	922	Gcc/Acc					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138409963	138409963	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	41	319	0	ENST00000289153.2:c.1915C>A	p.Leu639Ile	p.L639I	ENST00000289153	NM_006219.2	639	Ctt/Att					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142168390	142168390	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	53	394	0	ENST00000350721.4:c.7816C>T	p.Arg2606Ter	p.R2606*	ENST00000350721	NM_001184.3	2606	Cga/Tga					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142261526	142261526	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	63	424	0	ENST00000350721.4:c.3431G>A	p.Gly1144Asp	p.G1144D	ENST00000350721	NM_001184.3	1144	gGc/gAc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916946	178916946	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	85	628	0	ENST00000263967.3:c.333G>T	p.Lys111Asn	p.K111N	ENST00000263967	NM_006218.2	111	aaG/aaT					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178922300	178922300	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	52	348	1	ENST00000263967.3:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000263967	NM_006218.2	357	Cga/Tga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	72	394	1	ENST00000263967.3:c.3012G>T	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atT					NEWRECORD																																																																									
DCUN1D1	0	MSKCC	GRCh37	3	182665058	182665058	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1070	70	550	0	ENST00000292782.4:c.668T>G	p.Ile223Ser	p.I223S	ENST00000292782	NM_020640.2	223	aTt/aGt					NEWRECORD																																																																									
MAP3K13	9175	MSKCC	GRCh37	3	185181425	185181425	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1435276633		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	87	503	1	ENST00000265026.3:c.1366C>T	p.Arg456Ter	p.R456*	ENST00000265026	NM_004721.4	456	Cga/Tga					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55133597	55133597	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	59	423	0	ENST00000257290.5:c.901G>T	p.Glu301Ter	p.E301*	ENST00000257290	NM_006206.4	301	Gaa/Taa					NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55595622	55595622	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	41	240	0	ENST00000288135.5:c.2112G>T	p.Lys704Asn	p.K704N	ENST00000288135	NM_000222.2	704	aaG/aaT					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55599248	55599248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	61	331	0	ENST00000288135.5:c.2374G>A	p.Asp792Asn	p.D792N	ENST00000288135	NM_000222.2	792	Gac/Aac					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55603385	55603385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	62	566	2	ENST00000288135.5:c.2741G>T	p.Arg914Ile	p.R914I	ENST00000288135	NM_000222.2	914	aGa/aTa					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55961106	55961106	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	65	447	0	ENST00000263923.4:c.2834T>G	p.Phe945Cys	p.F945C	ENST00000263923	NM_002253.2	945	tTc/tGc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55981579	55981579	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	37	261	1	ENST00000263923.4:c.359-1G>T		p.X120_splice	ENST00000263923	NM_002253.2	120						NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66286183	66286183	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	71	513	0	ENST00000273854.3:c.1503G>T	p.Glu501Asp	p.E501D	ENST00000273854	NM_004439.5	501	gaG/gaT					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467461	66467461	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	48	370	0	ENST00000273854.3:c.808G>T	p.Glu270Ter	p.E270*	ENST00000273854	NM_004439.5	270	Gaa/Taa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157965	106157965	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	29	242	1	ENST00000380013.4:c.2866C>A	p.Leu956Ile	p.L956I	ENST00000380013	NM_001127208.2	956	Ctc/Atc					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106196499	106196499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	69	531	0	ENST00000380013.4:c.4832C>A	p.Ser1611Tyr	p.S1611Y	ENST00000380013	NM_001127208.2	1611	tCt/tAt					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	76	470	2	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187539690	187539690	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	77	470	1	ENST00000441802.2:c.8050G>T	p.Glu2684Ter	p.E2684*	ENST00000441802	NM_005245.3	2684	Gaa/Taa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187541523	187541523	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	110	544	2	ENST00000441802.2:c.6217G>T	p.Asp2073Tyr	p.D2073Y	ENST00000441802	NM_005245.3	2073	Gac/Tac					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187542753	187542753	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200613891		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	80	505	0	ENST00000441802.2:c.4987G>A	p.Ala1663Thr	p.A1663T	ENST00000441802	NM_005245.3	1663	Gcc/Acc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187542860	187542860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	67	382	0	ENST00000441802.2:c.4880G>A	p.Arg1627Gln	p.R1627Q	ENST00000441802	NM_005245.3	1627	cGa/cAa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187557810	187557810	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	77	558	0	ENST00000441802.2:c.3901T>G	p.Phe1301Val	p.F1301V	ENST00000441802	NM_005245.3	1301	Ttc/Gtc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	32	185	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876216	35876216	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	74	421	2	ENST00000303115.3:c.1008G>T	p.Glu336Asp	p.E336D	ENST00000303115	NM_002185.3	336	gaG/gaT					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876581	35876581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	26	185	0	ENST00000303115.3:c.1373A>G	p.Asn458Ser	p.N458S	ENST00000303115	NM_002185.3	458	aAc/aGc					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38950561	38950561	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201384226		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	80	570	0	ENST00000357387.3:c.3389G>A	p.Arg1130Gln	p.R1130Q	ENST00000357387	NM_152756.3	1130	cGa/cAa					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591076	67591076	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	51	286	0	ENST00000274335.5:c.1669C>T	p.Arg557Ter	p.R557*	ENST00000274335		557	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	52	336	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174631	112174631	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913331		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	57	544	0	ENST00000257430.4:c.3340C>T	p.Arg1114Ter	p.R1114*	ENST00000257430	NM_000038.5	1114	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175897	112175897	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	50	301	0	ENST00000257430.4:c.4606G>T	p.Glu1536Ter	p.E1536*	ENST00000257430	NM_000038.5	1536	Gaa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177049	112177049	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	66	637	0	ENST00000257430.4:c.5758C>T	p.Arg1920Ter	p.R1920*	ENST00000257430	NM_000038.5	1920	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177788	112177788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	57	266	1	ENST00000257430.4:c.6497G>A	p.Arg2166Gln	p.R2166Q	ENST00000257430	NM_000038.5	2166	cGa/cAa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	127	339	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178000	112178000	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	66	509	0	ENST00000257430.4:c.6709C>T	p.Arg2237Ter	p.R2237*	ENST00000257430	NM_000038.5	2237	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178211	112178211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	93	523	1	ENST00000257430.4:c.6920C>T	p.Ser2307Leu	p.S2307L	ENST00000257430	NM_000038.5	2307	tCg/tTg					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131953874	131953874	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	66	361	0	ENST00000265335.6:c.3277C>T	p.Arg1093Ter	p.R1093*	ENST00000265335		1093	Cga/Tga					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149502666	149502666	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	45	387	0	ENST00000261799.4:c.2122C>T	p.Arg708Cys	p.R708C	ENST00000261799	NM_002609.3	708	Cgc/Tgc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180030290	180030290	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	86	615	0	ENST00000261937.6:c.3994T>C	p.Phe1332Leu	p.F1332L	ENST00000261937	NM_182925.4	1332	Ttt/Ctt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180057642	180057642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs150416750		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	88	603	3	ENST00000261937.6:c.313G>A	p.Asp105Asn	p.D105N	ENST00000261937	NM_182925.4	105	Gac/Aac					NEWRECORD																																																																									
PNRC1	0	MSKCC	GRCh37	6	89793647	89793647	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	73	443	0	ENST00000336032.3:c.716C>A	p.Ser239Tyr	p.S239Y	ENST00000336032	NM_006813.2	239	tCt/tAt					NEWRECORD																																																																									
PNRC1	0	MSKCC	GRCh37	6	89793716	89793716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	70	431	0	ENST00000336032.3:c.785C>T	p.Ser262Leu	p.S262L	ENST00000336032	NM_006813.2	262	tCg/tTg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93965719	93965719	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	93	684	0	ENST00000369303.4:c.2209G>T	p.Gly737Ter	p.G737*	ENST00000369303	NM_004440.3	737	Gga/Tga					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93968000	93968000	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	90	535	0	ENST00000369303.4:c.1927G>T	p.Glu643Ter	p.E643*	ENST00000369303	NM_004440.3	643	Gaa/Taa					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120845	94120845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	110	707	1	ENST00000369303.4:c.206G>A	p.Arg69Gln	p.R69Q	ENST00000369303	NM_004440.3	69	cGa/cAa					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106536164	106536164	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	85	470	1	ENST00000369096.4:c.131C>T	p.Ala44Val	p.A44V	ENST00000369096	NM_001198.3	44	gCg/gTg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117629975	117629975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	59	406	0	ENST00000368508.3:c.6551G>T	p.Arg2184Ile	p.R2184I	ENST00000368508	NM_002944.2	2184	aGa/aTa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117665261	117665261	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	81	412	0	ENST00000368508.3:c.4486G>T	p.Asp1496Tyr	p.D1496Y	ENST00000368508	NM_002944.2	1496	Gac/Tac					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117715350	117715350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	90	386	0	ENST00000368508.3:c.1139G>A	p.Arg380Lys	p.R380K	ENST00000368508	NM_002944.2	380	aGa/aAa					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137522061	137522061	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	30	195	0	ENST00000367739.4:c.818T>G	p.Ile273Ser	p.I273S	ENST00000367739	NM_000416.2	273	aTt/aGt					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138200479	138200479	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	39	260	0	ENST00000237289.4:c.1897G>T	p.Glu633Ter	p.E633*	ENST00000237289	NM_001270507.1	633	Gaa/Taa					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150001374	150001374	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	89	541	0	ENST00000253339.5:c.2230C>T	p.Arg744Ter	p.R744*	ENST00000253339		744	Cga/Tga					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150004834	150004834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	40	270	1	ENST00000253339.5:c.1391C>A	p.Ser464Tyr	p.S464Y	ENST00000253339		464	tCt/tAt					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162622230	162622230	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	87	443	0	ENST00000366898.1:c.467G>T	p.Arg156Ile	p.R156I	ENST00000366898	NM_004562.2	156	aGa/aTa					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162683713	162683713	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	73	463	1	ENST00000366898.1:c.256G>A	p.Asp86Asn	p.D86N	ENST00000366898	NM_004562.2	86	Gac/Aac					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729390	41729390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	123	772	2	ENST00000242208.4:c.1139G>A	p.Gly380Asp	p.G380D	ENST00000242208	NM_002192.2	380	gGc/gAc					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41739756	41739756	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	72	815	1	ENST00000242208.4:c.217G>A	p.Asp73Asn	p.D73N	ENST00000242208	NM_002192.2	73	Gat/Aat					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508490	106508490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	13	132	0	ENST00000359195.3:c.484G>A	p.Val162Ile	p.V162I	ENST00000359195	NM_002649.2	162	Gtc/Atc					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128845057	128845057	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	85	547	0	ENST00000249373.3:c.551A>G	p.Asn184Ser	p.N184S	ENST00000249373	NM_005631.4	184	aAc/aGc					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128846196	128846196	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	78	562	1	ENST00000249373.3:c.1126C>A	p.Leu376Ile	p.L376I	ENST00000249373	NM_005631.4	376	Ctt/Att					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453130	140453130	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	51	292	0	ENST00000288602.6:c.1805C>A	p.Ser602Tyr	p.S602Y	ENST00000288602	NM_004333.4	602	tCt/tAt					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148543633	148543633	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	79	381	0	ENST00000320356.2:c.175G>T	p.Glu59Ter	p.E59*	ENST00000320356	NM_004456.4	59	Gaa/Taa					NEWRECORD																																																																									
RHEB	0	MSKCC	GRCh37	7	151188035	151188035	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	125	583	0	ENST00000262187.5:c.118G>T	p.Glu40Ter	p.E40*	ENST00000262187	NM_005614.3	40	Gaa/Taa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151884866	151884866	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	70	437	0	ENST00000262189.6:c.4727C>A	p.Ser1576Tyr	p.S1576Y	ENST00000262189	NM_170606.2	1576	tCt/tAt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151919101	151919101	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	39	341	0	ENST00000262189.6:c.3484A>C	p.Lys1162Gln	p.K1162Q	ENST00000262189	NM_170606.2	1162	Aaa/Caa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152132768	152132768	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	48	362	1	ENST00000262189.6:c.104G>T	p.Arg35Ile	p.R35I	ENST00000262189	NM_170606.2	35	aGa/aTa					NEWRECORD																																																																									
XRCC2	0	MSKCC	GRCh37	7	152346284	152346284	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	120	746	0	ENST00000359321.1:c.286C>A	p.Leu96Ile	p.L96I	ENST00000359321	NM_005431.1	96	Ctt/Att					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90983450	90983450	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	55	340	0	ENST00000265433.3:c.653G>T	p.Arg218Ile	p.R218I	ENST00000265433	NM_002485.4	218	aGa/aTa					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117862893	117862893	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	60	475	0	ENST00000297338.2:c.1584G>T	p.Glu528Asp	p.E528D	ENST00000297338	NM_006265.2	528	gaG/gaT					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5055687	5055687	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	47	272	0	ENST00000381652.3:c.955G>A	p.Asp319Asn	p.D319N	ENST00000381652	NM_004972.3	319	Gat/Aat					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8471050	8471050	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	82	419	0	ENST00000356435.5:c.3449C>A	p.Ser1150Tyr	p.S1150Y	ENST00000356435		1150	tCt/tAt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484161	8484161	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	75	515	0	ENST00000356435.5:c.3371T>G	p.Ile1124Ser	p.I1124S	ENST00000356435		1124	aTt/aGt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8500759	8500759	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	45	249	0	ENST00000356435.5:c.2123A>C	p.Glu708Ala	p.E708A	ENST00000356435		708	gAa/gCa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8517878	8517878	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	73	540	0	ENST00000356435.5:c.1513A>C	p.Ser505Arg	p.S505R	ENST00000356435		505	Agt/Cgt					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87342807	87342807	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	51	365	0	ENST00000277120.3:c.1092G>T	p.Lys364Asn	p.K364N	ENST00000277120		364	aaG/aaT					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98220400	98220400	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	57	457	0	ENST00000331920.6:c.3063C>A	p.Tyr1021Ter	p.Y1021*	ENST00000331920	NM_000264.3	1021	taC/taA					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63810751	63810751	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143185576		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	69	380	1	ENST00000279873.7:c.838G>A	p.Val280Ile	p.V280I	ENST00000279873	NM_032199.2	280	Gtt/Att					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405725	70405725	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	46	348	0	ENST00000373644.4:c.3239A>C	p.Gln1080Pro	p.Q1080P	ENST00000373644	NM_030625.2	1080	cAg/cCg					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405915	70405915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	102	538	3	ENST00000373644.4:c.3429G>T	p.Lys1143Asn	p.K1143N	ENST00000373644	NM_030625.2	1143	aaG/aaT					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114920404	114920404	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	116	578	1	ENST00000543371.1:c.1345G>A	p.Ala449Thr	p.A449T	ENST00000543371	NM_001198531.1	449	Gca/Aca					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741781	17741781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	56	354	0	ENST00000250003.3:c.452G>A	p.Arg151His	p.R151H	ENST00000250003	NM_002478.4	151	cGc/cAc					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17742907	17742907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	33	251	0	ENST00000250003.3:c.815C>T	p.Ala272Val	p.A272V	ENST00000250003	NM_002478.4	272	gCg/gTg					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625274	69625274	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	87	591	0	ENST00000334134.2:c.519G>T	p.Gln173His	p.Q173H	ENST00000334134	NM_005247.2	173	caG/caT					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69631101	69631101	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	73	607	1	ENST00000334134.2:c.311G>A	p.Arg104Gln	p.R104Q	ENST00000334134	NM_005247.2	104	cGa/cAa					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999560	100999560	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	109	728	0	ENST00000325455.5:c.242C>T	p.Ser81Leu	p.S81L	ENST00000325455	NM_001202474.3	81	tCg/tTg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108098519	108098519	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	33	236	0	ENST00000278616.4:c.89T>G	p.Phe30Cys	p.F30C	ENST00000278616	NM_000051.3	30	tTt/tGt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108204660	108204660	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	43	219	0	ENST00000278616.4:c.7975T>G	p.Leu2659Val	p.L2659V	ENST00000278616	NM_000051.3	2659	Tta/Gta					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	11992143	11992143	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	62	440	0	ENST00000396373.4:c.233C>A	p.Ser78Tyr	p.S78Y	ENST00000396373	NM_001987.4	78	tCt/tAt					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18435486	18435486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	58	318	0	ENST00000266497.5:c.471G>T	p.Glu157Asp	p.E157D	ENST00000266497		157	gaG/gaT					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18793432	18793432	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs187869576		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	107	510	1	ENST00000266497.5:c.4129C>T	p.Arg1377Cys	p.R1377C	ENST00000266497		1377	Cgt/Tgt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	49	344	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944867	31944867	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	68	422	0	ENST00000340398.3:c.234C>A	p.Phe78Leu	p.F78L	ENST00000340398	NM_001013699.2	78	ttC/ttA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49445815	49445815	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	108	738	1	ENST00000301067.7:c.1651G>T	p.Glu551Ter	p.E551*	ENST00000301067	NM_003482.3	551	Gaa/Taa					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57861149	57861149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	123	701	0	ENST00000228682.2:c.946G>A	p.Glu316Lys	p.E316K	ENST00000228682	NM_005269.2	316	Gaa/Aaa					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111885467	111885467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	84	574	0	ENST00000341259.2:c.1244G>A	p.Arg415His	p.R415H	ENST00000341259	NM_005475.2	415	cGc/cAc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133218920	133218920	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	109	600	0	ENST00000320574.5:c.5016C>A	p.Phe1672Leu	p.F1672L	ENST00000320574	NM_006231.2	1672	ttC/ttA					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133249847	133249847	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	36	387	0	ENST00000320574.5:c.1376C>T	p.Ser459Phe	p.S459F	ENST00000320574	NM_006231.2	459	tCt/tTt					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133253217	133253217	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	72	447	0	ENST00000320574.5:c.824A>G	p.Asp275Gly	p.D275G	ENST00000320574	NM_006231.2	275	gAc/gGc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28636175	28636175	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	57	454	3	ENST00000241453.7:c.197C>T	p.Ala66Val	p.A66V	ENST00000241453	NM_004119.2	66	gCg/gTg					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28644705	28644705	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	55	350	0	ENST00000241453.7:c.88C>A	p.Leu30Met	p.L30M	ENST00000241453	NM_004119.2	30	Ctg/Atg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28893587	28893587	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	55	429	0	ENST00000282397.4:c.3259G>T	p.Val1087Leu	p.V1087L	ENST00000282397	NM_002019.4	1087	Gta/Tta					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28895689	28895689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	52	462	0	ENST00000282397.4:c.3085C>A	p.Leu1029Ile	p.L1029I	ENST00000282397	NM_002019.4	1029	Ctt/Att					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28963966	28963966	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	83	480	0	ENST00000282397.4:c.1936G>T	p.Glu646Ter	p.E646*	ENST00000282397	NM_002019.4	646	Gaa/Taa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911141	32911141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	145	785	1	ENST00000380152.3:c.2649C>A	p.Phe883Leu	p.F883L	ENST00000380152		883	ttC/ttA					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911354	32911354	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1207	111	785	4	ENST00000380152.3:c.2862G>T	p.Glu954Asp	p.E954D	ENST00000380152		954	gaG/gaT					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32912323	32912323	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1002	88	610	0	ENST00000380152.3:c.3831T>G	p.Asn1277Lys	p.N1277K	ENST00000380152		1277	aaT/aaG					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913309	32913309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1306	133	801	0	ENST00000380152.3:c.4817C>A	p.Ser1606Tyr	p.S1606Y	ENST00000380152		1606	tCt/tAt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913522	32913522	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1219	106	715	4	ENST00000380152.3:c.5030G>T	p.Arg1677Ile	p.R1677I	ENST00000380152		1677	aGa/aTa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914505	32914505	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1217	93	772	2	ENST00000380152.3:c.6013G>T	p.Asp2005Tyr	p.D2005Y	ENST00000380152		2005	Gat/Tat					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914877	32914877	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1240	133	783	2	ENST00000380152.3:c.6385G>T	p.Glu2129Ter	p.E2129*	ENST00000380152		2129	Gaa/Taa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32937339	32937339	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	49	316	1	ENST00000380152.3:c.8000G>T	p.Ser2667Ile	p.S2667I	ENST00000380152		2667	aGc/aTc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941654	48941654	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	56	302	1	ENST00000267163.4:c.964G>A	p.Glu322Lys	p.E322K	ENST00000267163	NM_000321.2	322	Gaa/Aaa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48953748	48953748	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	46	304	0	ENST00000267163.4:c.1351C>T	p.Arg451Cys	p.R451C	ENST00000267163	NM_000321.2	451	Cgc/Tgc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030396	49030396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	44	331	1	ENST00000267163.4:c.1871C>A	p.Ser624Tyr	p.S624Y	ENST00000267163	NM_000321.2	624	tCt/tAt					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103504590	103504590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	90	493	0	ENST00000355739.4:c.211C>T	p.Arg71Cys	p.R71C	ENST00000355739	NM_000123.3	71	Cgt/Tgt					NEWRECORD																																																																									
NFKBIA	0	MSKCC	GRCh37	14	35873726	35873726	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	95	595	2	ENST00000216797.5:c.125A>G	p.Tyr42Cys	p.Y42C	ENST00000216797	NM_020529.2	42	tAc/tGc					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81558897	81558897	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	70	448	0	ENST00000298171.2:c.490A>G	p.Met164Val	p.M164V	ENST00000298171	NM_000369.2	164	Atg/Gtg					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95574344	95574344	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	51	393	0	ENST00000343455.3:c.2523A>C	p.Gln841His	p.Q841H	ENST00000343455	NM_177438.2	841	caA/caC					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95582831	95582831	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	59	398	0	ENST00000343455.3:c.1711A>C	p.Ser571Arg	p.S571R	ENST00000343455	NM_177438.2	571	Agt/Cgt					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95596487	95596487	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	49	336	0	ENST00000343455.3:c.481A>C	p.Asn161His	p.N161H	ENST00000343455	NM_177438.2	161	Aat/Cat					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42050032	42050032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	74	484	0	ENST00000219905.7:c.7186C>T	p.Arg2396Ter	p.R2396*	ENST00000219905	NM_001164273.1	2396	Cga/Tga					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007743	45007743	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	64	379	2	ENST00000558401.1:c.190G>T	p.Glu64Ter	p.E64*	ENST00000558401	NM_004048.2	64	Gag/Tag					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007814	45007814	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	60	377	0	ENST00000558401.1:c.261C>A	p.Tyr87Ter	p.Y87*	ENST00000558401	NM_004048.2	87	taC/taA					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	54	488	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc					NEWRECORD																																																																									
CD276	0	MSKCC	GRCh37	15	73996053	73996053	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	31	325	0	ENST00000318443.5:c.787G>A	p.Asp263Asn	p.D263N	ENST00000318443	NM_001024736.1	263	Gat/Aat					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88423598	88423598	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	54	445	0	ENST00000360948.2:c.2237A>C	p.Lys746Thr	p.K746T	ENST00000360948	NM_001012338.2	746	aAg/aCg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88727513	88727513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	50	515	1	ENST00000360948.2:c.266G>A	p.Arg89His	p.R89H	ENST00000360948	NM_001012338.2	89	cGc/cAc					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91292902	91292902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	57	349	0	ENST00000355112.3:c.404C>T	p.Ala135Val	p.A135V	ENST00000355112	NM_000057.2	135	gCt/gTt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3820846	3820846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	46	389	1	ENST00000262367.5:c.2605C>T	p.Leu869Phe	p.L869F	ENST00000262367	NM_004380.2	869	Ctc/Ttc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3900884	3900884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	85	497	0	ENST00000262367.5:c.212C>T	p.Ser71Leu	p.S71L	ENST00000262367	NM_004380.2	71	tCg/tTg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9923465	9923465	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	64	458	2	ENST00000330684.3:c.1822C>A	p.Leu608Ile	p.L608I	ENST00000330684	NM_001134407.1	608	Ctt/Att					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72829797	72829797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	113	808	0	ENST00000268489.5:c.6784G>A	p.Asp2262Asn	p.D2262N	ENST00000268489	NM_006885.3	2262	Gat/Aat					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72845844	72845844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	134	803	0	ENST00000268489.5:c.3623C>T	p.Ser1208Leu	p.S1208L	ENST00000268489	NM_006885.3	1208	tCg/tTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576889	7576889	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	76	446	0	ENST00000269305.4:c.957G>T	p.Lys319Asn	p.K319N	ENST00000269305	NM_001126112.2	319	aaG/aaT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577575	7577575	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	66	478	0	ENST00000269305.4:c.706T>G	p.Tyr236Asp	p.Y236D	ENST00000269305	NM_001126112.2	236	Tac/Gac					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11984773	11984773	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	41	248	1	ENST00000353533.5:c.319G>T	p.Glu107Ter	p.E107*	ENST00000353533	NM_003010.3	107	Gaa/Taa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15942944	15942944	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	70	480	0	ENST00000268712.3:c.6758C>A	p.Ser2253Tyr	p.S2253Y	ENST00000268712	NM_006311.3	2253	tCt/tAt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16004601	16004601	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	48	457	1	ENST00000268712.3:c.2653G>A	p.Ala885Thr	p.A885T	ENST00000268712	NM_006311.3	885	Gct/Act					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29592269	29592269	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	70	399	0	ENST00000358273.4:c.4747G>T	p.Glu1583Ter	p.E1583*	ENST00000358273	NM_001042492.2	1583	Gaa/Taa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29684332	29684332	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	89	508	0	ENST00000358273.4:c.7915C>A	p.Leu2639Ile	p.L2639I	ENST00000358273	NM_001042492.2	2639	Ctt/Att					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59763428	59763428	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	64	313	0	ENST00000259008.2:c.2674C>A	p.Leu892Ile	p.L892I	ENST00000259008	NM_032043.2	892	Ctt/Att					NEWRECORD																																																																									
CD79B	0	MSKCC	GRCh37	17	62007205	62007205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	67	501	1	ENST00000392795.3:c.477G>T	p.Lys159Asn	p.K159N	ENST00000392795	NM_001039933.1	159	aaG/aaT					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63537616	63537616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	91	578	0	ENST00000307078.5:c.1016G>A	p.Arg339His	p.R339H	ENST00000307078	NM_004655.3	339	cGc/cAc					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66519919	66519919	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			609	62	354	1	ENST00000358598.2:c.402G>T	p.Lys134Asn	p.K134N	ENST00000358598	NM_212471.2	134	aaG/aaT					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66525083	66525083	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	49	303	0	ENST00000358598.2:c.842A>C	p.Lys281Thr	p.K281T	ENST00000358598	NM_212471.2	281	aAg/aCg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604736	48604736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	68	533	2	ENST00000342988.3:c.1558G>T	p.Glu520Ter	p.E520*	ENST00000342988	NM_005359.5	520	Gaa/Taa					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3114952	3114952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	56	450	0	ENST00000078429.4:c.487G>A	p.Asp163Asn	p.D163N	ENST00000078429	NM_002067.2	163	Gac/Aac					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5215400	5215400	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	75	541	0	ENST00000357368.4:c.4218C>A	p.Phe1406Leu	p.F1406L	ENST00000357368	NM_002850.3	1406	ttC/ttA					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7170598	7170598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	77	545	0	ENST00000302850.5:c.1433G>A	p.Arg478His	p.R478H	ENST00000302850	NM_000208.2	478	cGc/cAc					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10273402	10273402	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	110	555	0	ENST00000340748.4:c.901G>T	p.Glu301Ter	p.E301*	ENST00000340748		301	Gaa/Taa					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10291473	10291473	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs61750053		P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	94	583	0	ENST00000340748.4:c.206G>A	p.Arg69His	p.R69H	ENST00000340748		69	cGt/cAt					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15367830	15367830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	63	427	0	ENST00000263377.2:c.1496C>T	p.Ser499Leu	p.S499L	ENST00000263377	NM_058243.2	499	tCg/tTg					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33792496	33792496	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	48	336	0	ENST00000498907.2:c.825G>T	p.Lys275Asn	p.K275N	ENST00000498907	NM_004364.3	275	aaG/aaT					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42796237	42796237	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	49	382	1	ENST00000575354.2:c.2887-1G>T		p.X963_splice	ENST00000575354	NM_015125.3	963						NEWRECORD																																																																									
BBC3	0	MSKCC	GRCh37	19	47735857	47735857	+	start_lost	Translation_Start_Site	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	72	620	1	ENST00000449228.1:c.3G>T	p.Met1?	p.M1?	ENST00000449228	NM_001127240.2	1	atG/atT					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022481	31022481	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	16	193	0	ENST00000375687.4:c.1966G>A	p.Asp656Asn	p.D656N	ENST00000375687	NM_015338.5	656	Gat/Aat					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31389107	31389107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	79	479	1	ENST00000328111.2:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000328111	NM_006892.3	674	Gaa/Aaa					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39713125	39713125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	38	251	0	ENST00000361337.2:c.531G>T	p.Lys177Asn	p.K177N	ENST00000361337	NM_003286.2	177	aaG/aaT					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39750375	39750375	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	63	397	2	ENST00000361337.2:c.1990G>T	p.Asp664Tyr	p.D664Y	ENST00000361337	NM_003286.2	664	Gac/Tac					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41400138	41400138	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	86	394	0	ENST00000373198.4:c.621G>T	p.Gln207His	p.Q207H	ENST00000373198	NM_133170.3	207	caG/caT					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46256358	46256358	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	129	830	0	ENST00000371998.3:c.586A>C	p.Asn196His	p.N196H	ENST00000371998		196	Aat/Cat					NEWRECORD																																																																									
CRKL	0	MSKCC	GRCh37	22	21304066	21304066	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	99	584	0	ENST00000354336.3:c.845G>A	p.Arg282His	p.R282H	ENST00000354336	NM_005207.3	282	cGc/cAc					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24167550	24167550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	49	340	0	ENST00000263121.7:c.934G>A	p.Ala312Thr	p.A312T	ENST00000263121	NM_003073.3	312	Gca/Aca					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39932139	39932139	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	93	324	0	ENST00000378444.4:c.2460C>A	p.Asn820Lys	p.N820K	ENST00000378444	NM_001123385.1	820	aaC/aaA					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39934037	39934037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	97	328	1	ENST00000378444.4:c.562C>T	p.Arg188Trp	p.R188W	ENST00000378444	NM_001123385.1	188	Cgg/Tgg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937409	76937409	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	78	272	0	ENST00000373344.5:c.3339G>T	p.Glu1113Asp	p.E1113D	ENST00000373344	NM_000489.3	1113	gaG/gaT					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938841	76938841	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	79	318	0	ENST00000373344.5:c.1907A>C	p.Asn636Thr	p.N636T	ENST00000373344	NM_000489.3	636	aAt/aCt					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100611252	100611252	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	55	158	0	ENST00000308731.7:c.1354C>A	p.Leu452Ile	p.L452I	ENST00000308731	NM_000061.2	452	Ctt/Att					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	43	364	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99193597	99193597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	64	156	0	ENST00000074304.5:c.2792G>T	p.Cys931Phe	p.C931F	ENST00000074304	NM_001134224.1	931	tGc/tTc					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225339002	225339002	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	24	499	0	ENST00000264414.4:c.2267G>C	p.Arg756Pro	p.R756P	ENST00000264414	NM_003590.4	756	cGa/cCa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169107	32169107	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	101	260	0	ENST00000375023.3:c.3926A>T	p.Asp1309Val	p.D1309V	ENST00000375023	NM_004557.3	1309	gAc/gTc					NEWRECORD																																																																									
GREM1	0	MSKCC	GRCh37	15	33023005	33023005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	339	604	1	ENST00000300177.4:c.114G>T	p.Lys38Asn	p.K38N	ENST00000300177	NM_001191322.1	38	aaG/aaT					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041737	42041737	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	36	774	0	ENST00000219905.7:c.5932A>T	p.Lys1978Ter	p.K1978*	ENST00000219905	NM_001164273.1	1978	Aaa/Taa					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15302975	15302975	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	209	187	0	ENST00000263388.2:c.475G>T	p.Val159Leu	p.V159L	ENST00000263388	NM_000435.2	159	Gtg/Ttg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	252	478	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	91	226	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41747850	41747850	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	77	469	1	ENST00000226382.2:c.919G>A	p.Ala307Thr	p.A307T	ENST00000226382	NM_003924.3	307	Gcc/Acc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47677876	47677876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	83	226	0	ENST00000347630.2:c.989C>T	p.Ser330Leu	p.S330L	ENST00000347630	NM_001007230.1	330	tCg/tTg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212286743	212286743	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	103	387	2	ENST00000342788.4:c.2953C>A	p.Leu985Ile	p.L985I	ENST00000342788	NM_005235.2	985	Cta/Ata					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72495753	72495753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	85	427	0	ENST00000477973.2:c.317C>T	p.Pro107Ser	p.P107S	ENST00000477973	NM_012234.5	107	Cct/Tct					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97934374	97934374	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	39	551	0	ENST00000289081.3:c.401T>G	p.Phe134Cys	p.F134C	ENST00000289081	NM_000136.2	134	tTc/tGc					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625359	69625359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	53	485	3	ENST00000334134.2:c.434G>A	p.Arg145Gln	p.R145Q	ENST00000334134	NM_005247.2	145	cGg/cAg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32912816	32912816	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	218	1208	2	ENST00000380152.3:c.4324T>A	p.Ser1442Thr	p.S1442T	ENST00000380152		1442	Tca/Aca					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11169468	11169468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	91	449	1	ENST00000344626.4:c.4538G>T	p.Arg1513Leu	p.R1513L	ENST00000344626	NM_003072.3	1513	cGc/cTc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15291593	15291593	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	54	383	2	ENST00000263388.2:c.3041G>A	p.Arg1014His	p.R1014H	ENST00000263388	NM_000435.2	1014	cGc/cAc					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15375418	15375418	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	75	550	0	ENST00000263377.2:c.1009G>A	p.Asp337Asn	p.D337N	ENST00000263377	NM_058243.2	337	Gac/Aac					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18274097	18274097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	15	294	0	ENST00000222254.8:c.1315G>A	p.Val439Met	p.V439M	ENST00000222254	NM_005027.3	439	Gtg/Atg					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37873688	37873716	+	frameshift_variant	Frame_Shift_Del	DEL	ATGAGGAGGGCGCATGCCAGCCTTGCCCC	ATGAGGAGGGCGCATGCCAGCCTTGCCCC	-			P-0010407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	30	479	0	ENST00000269571.5:c.1855_1883del	p.Glu619GlnfsTer11	p.E619Qfs*11	ENST00000269571		618	gATGAGGAGGGCGCATGCCAGCCTTGCCCC/g					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014533-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	255	643	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	175	261	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	175	261	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	175	261	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	116	443	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106771	27106771	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	106	499	0	ENST00000324856.7:c.6382C>T	p.Gln2128Ter	p.Q2128*	ENST00000324856	NM_006015.4	2128	Cag/Tag					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99182615	99182615	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	70	298	0	ENST00000074304.5:c.2418G>T	p.Gln806His	p.Q806H	ENST00000074304	NM_001134224.1	806	caG/caT					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140434523	140434523	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	151	369	1	ENST00000288602.6:c.2175C>A	p.His725Gln	p.H725Q	ENST00000288602	NM_004333.4	725	caC/caA					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372435	55372435	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	163	580	0	ENST00000297316.4:c.1125G>T	p.Met375Ile	p.M375I	ENST00000297316	NM_022454.3	375	atG/atT					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56390302	56390302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	186	611	0	ENST00000348428.3:c.1041G>C	p.Leu347Phe	p.L347F	ENST00000348428	NM_006785.3	347	ttG/ttC					NEWRECORD																																																																									
EED	0	MSKCC	GRCh37	11	85963214	85963214	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	112	290	0	ENST00000263360.6:c.293del	p.Gly98GlufsTer14	p.G98Efs*14	ENST00000263360	NM_003797.3	98	Gga/ga					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294123	1294123	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	88	489	0	ENST00000310581.5:c.878del	p.Arg293ProfsTer58	p.R293Pfs*58	ENST00000310581	NM_198253.2	293	cGc/cc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435199	49435200	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0011457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	72	228	0	ENST00000301067.7:c.6353_6354delinsT	p.Pro2118LeufsTer26	p.P2118Lfs*26	ENST00000301067	NM_003482.3	2118	cCC/cT					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	55	327	0	ENST00000349496.5:c.1161T>G	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaG					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098566	11098566	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	40	251	0	ENST00000344626.4:c.1084G>A	p.Asp362Asn	p.D362N	ENST00000344626	NM_003072.3	362	Gac/Aac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	125	548	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36814391	36814391	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	46	678	0	ENST00000373129.3:c.649T>G	p.Phe217Val	p.F217V	ENST00000373129	NM_032017.1	217	Ttc/Gtc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434015	49434015	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	60	802	0	ENST00000301067.7:c.7538G>A	p.Gly2513Glu	p.G2513E	ENST00000301067	NM_003482.3	2513	gGg/gAg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68846140	68846140	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			865	46	723	0	ENST00000261769.5:c.1111A>T	p.Asn371Tyr	p.N371Y	ENST00000261769	NM_004360.3	371	Aat/Tat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577600	7577601	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0014674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	68	550	0	ENST00000269305.4:c.680_681del	p.Ser227Ter	p.S227*	ENST00000269305	NM_001126112.2	227	tCT/t					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45368254	45368254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	89	534	0	ENST00000262160.6:c.1348G>C	p.Asp450His	p.D450H	ENST00000262160	NM_005901.5	450	Gac/Cac					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604775	48604775	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014674-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			617	33	503	0	ENST00000342988.3:c.1597C>G	p.Leu533Val	p.L533V	ENST00000342988	NM_005359.5	533	Ctc/Gtc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187510048	187510048	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	141	566	0	ENST00000441802.2:c.13465T>G	p.Tyr4489Asp	p.Y4489D	ENST00000441802	NM_005245.3	4489	Tat/Gat					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176637541	176637541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	160	474	0	ENST00000439151.2:c.2141G>A	p.Gly714Asp	p.G714D	ENST00000439151	NM_022455.4	714	gGt/gAt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70344155	70344155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013724-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	225	855	0	ENST00000374080.3:c.1891C>T	p.Pro631Ser	p.P631S	ENST00000374080		631	Ccc/Tcc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	90	577	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013830-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	50	649	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	394	350	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31376690	31376690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	136	346	0	ENST00000328111.2:c.685G>A	p.Val229Met	p.V229M	ENST00000328111	NM_006892.3	229	Gtg/Atg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67670673	67670673	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010843-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	595	499	0	ENST00000264010.4:c.1918C>T	p.Pro640Ser	p.P640S	ENST00000264010	NM_006565.3	640	Cct/Tct					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	219	324	0	ENST00000281708.4:c.1436G>C	p.Arg479Pro	p.R479P	ENST00000281708	NM_033632.3	479	cGa/cCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	465	506	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	200	312	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142286929	142286929	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	40	477	0	ENST00000350721.4:c.127C>T	p.Arg43Trp	p.R43W	ENST00000350721	NM_001184.3	43	Cgg/Tgg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	292	461	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90995084	90995084	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	482	241	0	ENST00000265433.3:c.38-1G>T		p.X13_splice	ENST00000265433	NM_002485.4	13						NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50444318	50444318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	280	408	2	ENST00000331340.3:c.248G>A	p.Arg83Gln	p.R83Q	ENST00000331340	NM_006060.4	83	cGa/cAa					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411806	63411806	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	452	768	0	ENST00000330258.3:c.1361delT	p.Leu454Ter	p.L454*	ENST00000330258	NM_152424.3	454	tTg/tg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175788	112175788	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011520-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	115	296	0	ENST00000257430.4:c.4497delA	p.Ser1501LeufsTer6	p.S1501Lfs*6	ENST00000257430	NM_000038.5	1499	ggA/gg					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0015017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			530	253	406	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			716	163	665	2	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12032451	12032458	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTAGTAT	TTTAGTAT	AAA			P-0015017-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	54	354	2	ENST00000353533.5:c.892-5_894delinsAAA		p.X298_splice	ENST00000353533	NM_003010.3	298						NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	112	450	1	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220428	1220428	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	136	699	0	ENST00000326873.7:c.521A>G	p.His174Arg	p.H174R	ENST00000326873	NM_000455.4	174	cAc/cGc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010451-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	25	325	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	129	275	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48584497	48584497	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	106	257	1	ENST00000342988.3:c.670C>T	p.Gln224Ter	p.Q224*	ENST00000342988	NM_005359.5	224	Cag/Tag					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78430004	78430004	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	79	250	0	ENST00000370768.2:c.875G>C	p.Gly292Ala	p.G292A	ENST00000370768	NM_003902.3	292	gGa/gCa					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152201902	152201902	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	159	244	0	ENST00000206249.3:c.756A>T	p.Lys252Asn	p.K252N	ENST00000206249	NM_000125.3	252	aaA/aaT					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23619326	23619326	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	219	417	0	ENST00000261584.4:c.3209T>C	p.Leu1070Pro	p.L1070P	ENST00000261584	NM_024675.3	1070	cTc/cCc					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63409892	63409892	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	614	557	1	ENST00000330258.3:c.3275C>T	p.Pro1092Leu	p.P1092L	ENST00000330258	NM_152424.3	1092	cCt/cTt					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53223843	53223843	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011463-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	340	656	1	ENST00000375401.3:c.3516del	p.Ser1173ValfsTer91	p.S1173Vfs*91	ENST00000375401	NM_004187.3	1172	ccC/cc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	126	548	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	92	540	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41743883	41743883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1147	154	995	0	ENST00000301178.4:c.818C>T	p.Ala273Val	p.A273V	ENST00000301178	NM_021913.4	273	gCg/gTg					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243858958	243858958	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1248	125	689	1	ENST00000263826.5:c.107T>C	p.Ile36Thr	p.I36T	ENST00000263826	NM_005465.4	36	aTa/aCa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48586238	48586238	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0013226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	115	508	0	ENST00000342988.3:c.908del	p.Pro303LeufsTer33	p.P303Lfs*33	ENST00000342988	NM_005359.5	303	Cct/ct					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245802	46245811	+	frameshift_variant	Frame_Shift_Del	DEL	ACAGTGACTC	ACAGTGACTC	-			P-0013226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	124	670	0	ENST00000334344.6:c.3897_3906del	p.Tyr1299Ter	p.Y1299*	ENST00000334344	NM_152641.2	1299	tACAGTGACTCa/ta					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	201	390	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	34	567	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104353781	104353781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	80	630	0	ENST00000369902.3:c.715C>T	p.Arg239Trp	p.R239W	ENST00000369902	NM_016169.3	239	Cgg/Tgg					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137522056	137522056	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010094-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	65	439	0	ENST00000367739.4:c.823C>T	p.Pro275Ser	p.P275S	ENST00000367739	NM_000416.2	275	Cca/Tca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000025-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			788	201	585	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000025-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	269	1156	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	31	413	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220488	1220488	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	97	422	0	ENST00000326873.7:c.581A>T	p.Asp194Val	p.D194V	ENST00000326873	NM_000455.4	194	gAc/gTc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88799288	88799288	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	57	566	0	ENST00000360948.2:c.97C>A	p.Pro33Thr	p.P33T	ENST00000360948	NM_001012338.2	33	Cct/Act					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306758	41306758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010256-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	22	340	0	ENST00000373198.4:c.901G>A	p.Gly301Arg	p.G301R	ENST00000373198	NM_133170.3	301	Ggg/Agg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579346	7579346	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	524	295	0	ENST00000269305.4:c.341T>A	p.Leu114Ter	p.L114*	ENST00000269305	NM_001126112.2	114	tTg/tAg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16258139	16258139	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	470	250	0	ENST00000375759.3:c.5404T>C	p.Ser1802Pro	p.S1802P	ENST00000375759	NM_015001.2	1802	Tct/Cct					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25470464	25470464	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0012036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	347	405	0	ENST00000264709.3:c.1010C>G	p.Ser337Ter	p.S337*	ENST00000264709	NM_175629.2	337	tCa/tGa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112162940	112162940	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	363	275	0	ENST00000257430.4:c.1544A>T	p.Asn515Ile	p.N515I	ENST00000257430	NM_000038.5	515	aAc/aTc					NEWRECORD																																																																									
HIST1H3G	0	MSKCC	GRCh37	6	26271512	26271512	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1484	558	665	0	ENST00000305910.3:c.101G>A	p.Gly34Asp	p.G34D	ENST00000305910	NM_003534.2	34	gGc/gAc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139402505	139402505	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	299	400	0	ENST00000277541.6:c.3412A>G	p.Thr1138Ala	p.T1138A	ENST00000277541	NM_017617.3	1138	Aca/Gca					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50919979	50919979	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	210	348	0	ENST00000440232.2:c.3066G>T	p.Gln1022His	p.Q1022H	ENST00000440232	NM_002691.3	1022	caG/caT					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15841096	15841096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1549	479	634	0	ENST00000307771.7:c.1180G>A	p.Glu394Lys	p.E394K	ENST00000307771	NM_005089.3	394	Gaa/Aaa					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63413105	63413105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	233	460	1	ENST00000330258.3:c.62G>A	p.Arg21His	p.R21H	ENST00000330258	NM_152424.3	21	cGt/cAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175582	112175582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	223	812	0	ENST00000257430.4:c.4291A>G	p.Met1431Val	p.M1431V	ENST00000257430	NM_000038.5	1431	Atg/Gtg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187525032	187525032	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	109	566	0	ENST00000441802.2:c.10648A>G	p.Ile3550Val	p.I3550V	ENST00000441802	NM_005245.3	3550	Att/Gtt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108173754	108173754	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	T			P-0012068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	67	398	0	ENST00000278616.4:c.5494G>T	p.Glu1832Ter	p.E1832*	ENST00000278616	NM_000051.3	1832	Gaa/Taa					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266094	41266102	+	inframe_deletion	In_Frame_Del	DEL	CTGGACTCT	CTGGACTCT	-			P-0012068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	114	785	0	ENST00000349496.5:c.91_99del	p.Leu31_Ser33del	p.L31_S33del	ENST00000349496	NM_001904.3	31	CTGGACTCT/-					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628848	187628849	+	missense_variant	Missense_Mutation	DNP	GA	GA	AC			P-0012068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	138	799	1	ENST00000441802.2:c.2133_2134delinsGT	p.His712Tyr	p.H712Y	ENST00000441802	NM_005245.3	711	gcTCac/gcGTac					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	86	309	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099479	27099479	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0014668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			411	27	369	0	ENST00000324856.7:c.3715+1G>A		p.X1239_splice	ENST00000324856	NM_006015.4	1239						NEWRECORD																																																																									
SH2D1A	0	MSKCC	GRCh37	X	123480608	123480608	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014668-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	37	198	0	ENST00000371139.4:c.116G>A	p.Gly39Asp	p.G39D	ENST00000371139	NM_001114937.2	39	gGc/gAc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1062	43	656	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			931	161	770	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87563482	87563482	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			700	58	656	1	ENST00000277120.3:c.1870G>A	p.Val624Met	p.V624M	ENST00000277120		624	Gtg/Atg					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138374245	138374245	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			560	46	616	1	ENST00000289153.2:c.3199G>T	p.Asp1067Tyr	p.D1067Y	ENST00000289153	NM_006219.2	1067	Gac/Tac					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102195427	102195427	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	56	462	0	ENST00000263464.3:c.187A>G	p.Lys63Glu	p.K63E	ENST00000263464	NM_001165.4	63	Aag/Gag					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	396413	396413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1081	66	822	1	ENST00000262320.3:c.613G>A	p.Asp205Asn	p.D205N	ENST00000262320	NM_003502.3	205	Gat/Aat					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600369	10600369	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1338	398	923	0	ENST00000171111.5:c.1486G>C	p.Glu496Gln	p.E496Q	ENST00000171111	NM_203500.1	496	Gag/Cag					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52719825	52719825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015085-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			942	335	899	1	ENST00000322088.6:c.1037C>T	p.Ala346Val	p.A346V	ENST00000322088	NM_014225.5	346	gCc/gTc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134920412	134920412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	781	515	2	ENST00000398015.3:c.2227C>T	p.Arg743Trp	p.R743W	ENST00000398015	NM_004441.4	743	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	703	578	1	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	404756	404756	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3130	345	436	0	ENST00000399788.2:c.4438T>G	p.Phe1480Val	p.F1480V	ENST00000399788	NM_001042603.1	1480	Ttc/Gtc					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	347172	347172	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3632	368	619	0	ENST00000262320.3:c.1839G>C	p.Lys613Asn	p.K613N	ENST00000262320	NM_003502.3	613	aaG/aaC					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0015023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	195	1029	1	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17380457	17380457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	138	649	0	ENST00000375499.3:c.58G>A	p.Gly20Arg	p.G20R	ENST00000375499	NM_003000.2	20	Gga/Aga					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31019279	31019279	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			416	40	388	0	ENST00000375687.4:c.874G>C	p.Asp292His	p.D292H	ENST00000375687	NM_015338.5	292	Gac/Cac					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738699	145738699	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015023-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	198	837	1	ENST00000428558.2:c.2365C>G	p.Leu789Val	p.L789V	ENST00000428558	NM_004260.3	789	Ctg/Gtg					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	82	443	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16263979	16263979	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	42	568	0	ENST00000375759.3:c.10348C>T	p.Gln3450Ter	p.Q3450*	ENST00000375759	NM_015001.2	3450	Cag/Tag					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246629	46246629	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	43	218	0	ENST00000334344.6:c.4723C>T	p.Gln1575Ter	p.Q1575*	ENST00000334344	NM_152641.2	1575	Cag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	87	332	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	33	182	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023376	27023376	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	40	200	0	ENST00000324856.7:c.482T>C	p.Val161Ala	p.V161A	ENST00000324856	NM_006015.4	161	gTc/gCc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412023	116412023	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012061-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	70	307	0	ENST00000397752.3:c.3008A>G	p.Tyr1003Cys	p.Y1003C	ENST00000397752	NM_000245.2	1003	tAc/tGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	158	404	1	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89456470	89456470	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs147450955		P-0010221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	122	555	1	ENST00000336596.2:c.1646C>T	p.Ala549Val	p.A549V	ENST00000336596	NM_005233.5	549	gCg/gTg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851574	134851574	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	87	271	0	ENST00000398015.3:c.980G>A	p.Arg327His	p.R327H	ENST00000398015	NM_004441.4	327	cGc/cAc					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	112020817	112020817	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	286	981	0	ENST00000368678.4:c.754C>T	p.Gln252Ter	p.Q252*	ENST00000368678		252	Caa/Taa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928065	178928076	+	inframe_deletion	In_Frame_Del	DEL	TACCTCATGGAT	TACCTCATGGAT	-			P-0010221-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	82	438	0	ENST00000263967.3:c.1345_1356del	p.Pro449_Leu452del	p.P449_L452del	ENST00000263967	NM_006218.2	448	gTACCTCATGGATta/gta					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152265352	152265352	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142712646		P-0011111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	22	378	0	ENST00000206249.3:c.805C>T	p.Arg269Cys	p.R269C	ENST00000206249	NM_000125.3	269	Cgc/Tgc					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0011111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	11	377	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	33	445	1	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	10	158	0	ENST00000304494.5:c.270C>G	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttG					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	10	158	0	ENST00000304494.5:c.270C>G	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttG					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971088	21971088	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011111-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	10	158	0	ENST00000304494.5:c.270C>G	p.Phe90Leu	p.F90L	ENST00000304494	NM_000077.4	90	ttC/ttG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			305	264	406	3	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46244616	46244616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			731	262	439	0	ENST00000334344.6:c.2710C>T	p.Gln904Ter	p.Q904*	ENST00000334344	NM_152641.2	904	Cag/Tag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023858	27023858	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			198	206	235	0	ENST00000324856.7:c.964G>C	p.Asp322His	p.D322H	ENST00000324856	NM_006015.4	322	Gac/Cac					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114925697	114925697	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	368	420	1	ENST00000543371.1:c.1775A>T	p.Gln592Leu	p.Q592L	ENST00000543371	NM_001198531.1	592	cAg/cTg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133240981	133240981	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	276	372	1	ENST00000320574.5:c.2536G>A	p.Ala846Thr	p.A846T	ENST00000320574	NM_006231.2	846	Gca/Aca					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72831281	72831281	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	175	285	2	ENST00000268489.5:c.5300T>C	p.Ile1767Thr	p.I1767T	ENST00000268489	NM_006885.3	1767	aTc/aCc					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37050360	37050360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	141	316	0	ENST00000231790.2:c.509G>A	p.Ser170Asn	p.S170N	ENST00000231790	NM_000249.3	170	aGt/aAt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187557879	187557879	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014550-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	288	365	0	ENST00000441802.2:c.3832G>T	p.Asp1278Tyr	p.D1278Y	ENST00000441802	NM_005245.3	1278	Gac/Tac					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	106	231	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	122	548	0	ENST00000269305.4:c.994-1G>A		p.X332_splice	ENST00000269305	NM_001126112.2	332						NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68855921	68855921	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	162	453	0	ENST00000261769.5:c.1730del	p.Gly577GlufsTer7	p.G577Efs*7	ENST00000261769	NM_004360.3	577	Gga/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	51	495	0	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121426701	121426701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	223	650	2	ENST00000257555.6:c.392G>A	p.Arg131Gln	p.R131Q	ENST00000257555		131	cGg/cAg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134968330	134968330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	46	394	0	ENST00000398015.3:c.2843C>T	p.Ser948Leu	p.S948L	ENST00000398015	NM_004441.4	948	tCa/tTa					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851728	63851728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	175	507	0	ENST00000279873.7:c.2506C>T	p.His836Tyr	p.H836Y	ENST00000279873	NM_032199.2	836	Cat/Tat					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56434840	56434840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	40	418	1	ENST00000407977.2:c.2297C>T	p.Ser766Leu	p.S766L	ENST00000407977		766	tCg/tTg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9560967	9560967	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	132	461	0	ENST00000353224.5:c.815A>T	p.Tyr272Phe	p.Y272F	ENST00000353224	NM_177990.2	272	tAc/tTc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76776294	76776294	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			950	243	779	0	ENST00000373344.5:c.7172A>G	p.Tyr2391Cys	p.Y2391C	ENST00000373344	NM_000489.3	2391	tAc/tGc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	75	603	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0015042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			316	54	623	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453111	140453111	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015042-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			531	77	611	0	ENST00000288602.6:c.1824T>A	p.His608Gln	p.H608Q	ENST00000288602	NM_004333.4	608	caT/caA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	169	194	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189582169	189582169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	329	508	0	ENST00000264731.3:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000264731	NM_003722.4	243	cGg/cAg					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56111647	56111647	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	220	407	0	ENST00000399503.3:c.247T>A	p.Ser83Thr	p.S83T	ENST00000399503	NM_005921.1	83	Tca/Aca					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8633407	8633407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	284	621	2	ENST00000356435.5:c.262C>T	p.Arg88Trp	p.R88W	ENST00000356435		88	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578428	7578627	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCA	GCTGTGACTGCTTGTAGATGGCCATGGCGCGGACGCGGGTGCCGGGCGGGGGTGTGGAATCAACCCACAGCTGCACAGGGCAGGTCTTGGCCAGTTGGCAAAACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGAGGAAGGAGACAGAGTTGAAAGTCAGGGCACAAGTGAACAGATAAAGCAACTGGAAGACGGCA	-			P-0011090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	111	444	0	ENST00000269305.4:c.376-73_502del		p.X126_splice	ENST00000269305	NM_001126112.2	126						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0004605-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			340	162	195	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578414	7578414	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0004605-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			233	805	320	0	ENST00000269305.4:c.516delT	p.Val173Ter	p.V173*	ENST00000269305	NM_001126112.2	172	gtT/gt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100998975	100998975	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004605-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1825	676	524	1	ENST00000325455.5:c.827C>T	p.Ser276Leu	p.S276L	ENST00000325455	NM_001202474.3	276	tCa/tTa					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121416773	121416773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0004605-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1670	793	576	3	ENST00000257555.6:c.202C>T	p.Arg68Trp	p.R68W	ENST00000257555		68	Cgg/Tgg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29557921	29557921	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004605-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			88	317	187	0	ENST00000358273.4:c.3175G>A	p.Asp1059Asn	p.D1059N	ENST00000358273	NM_001042492.2	1059	Gat/Aat					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2211130	2211130	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0004605-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			275	832	584	1	ENST00000398665.3:c.1384C>T	p.Gln462Ter	p.Q462*	ENST00000398665	NM_032482.2	462	Cag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29554294	29554312	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TGCAGGAAACACTGAGGTA	TGCAGGAAACACTGAGGTA	-			P-0004605-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			240	669	364	0	ENST00000358273.4:c.2313_2325+6delAGGAAACACTGAGGTATGC		p.X771_splice	ENST00000358273	NM_001042492.2	771						NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70014035	70014035	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0004605-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1253	70	641	0	ENST00000352241.4:c.1199T>A	p.Leu400His	p.L400H	ENST00000352241	NM_198159.2	400	cTt/cAt					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35867550	35867550	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004605-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			808	156	389	0	ENST00000303115.3:c.364G>T	p.Asp122Tyr	p.D122Y	ENST00000303115	NM_002185.3	122	Gac/Tac					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15367776	15367776	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0004605-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			706	80	311	1	ENST00000263377.2:c.1550A>T	p.Gln517Leu	p.Q517L	ENST00000263377	NM_058243.2	517	cAg/cTg					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15367781	15367781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0004605-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			735	81	314	0	ENST00000263377.2:c.1545G>T	p.Gln515His	p.Q515H	ENST00000263377	NM_058243.2	515	caG/caT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			797	436	502	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131939182	131939182	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0014487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	450	436	0	ENST00000265335.6:c.2397+1G>T		p.X799_splice	ENST00000265335		799						NEWRECORD																																																																									
LMO1	0	MSKCC	GRCh37	11	8251917	8251917	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	212	559	0	ENST00000335790.3:c.160T>C	p.Cys54Arg	p.C54R	ENST00000335790	NM_002315.2	54	Tgt/Cgt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56495670	56495670	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014487-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			652	43	454	0	ENST00000267101.3:c.3860A>T	p.Gln1287Leu	p.Q1287L	ENST00000267101	NM_001982.3	1287	cAa/cTa					NEWRECORD																																																																									
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0012453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	153	472	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	118	223	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	138	505	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88423632	88423632	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	124	434	0	ENST00000360948.2:c.2203C>T	p.Arg735Cys	p.R735C	ENST00000360948	NM_001012338.2	735	Cgc/Tgc					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46230613	46230613	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	200	616	1	ENST00000334344.6:c.862C>T	p.Gln288Ter	p.Q288*	ENST00000334344	NM_152641.2	288	Cag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29533315	29533315	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	146	576	0	ENST00000358273.4:c.1318C>T	p.Arg440Ter	p.R440*	ENST00000358273	NM_001042492.2	440	Cga/Tga					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46230641	46230642	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	134	674	0	ENST00000334344.6:c.890_891delinsTT	p.Ser297Phe	p.S297F	ENST00000334344	NM_152641.2	297	tCC/tTT					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117609907	117609907	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	205	720	1	ENST00000368508.3:c.6792G>A	p.Met2264Ile	p.M2264I	ENST00000368508	NM_002944.2	2264	atG/atA					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139417634	139417634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	126	505	0	ENST00000277541.6:c.410C>T	p.Ser137Leu	p.S137L	ENST00000277541	NM_017617.3	137	tCg/tTg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187540740	187540740	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	91	464	0	ENST00000441802.2:c.7000C>T	p.His2334Tyr	p.H2334Y	ENST00000441802	NM_005245.3	2334	Cat/Tat					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117641054	117641054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	157	565	0	ENST00000368508.3:c.5917G>A	p.Gly1973Arg	p.G1973R	ENST00000368508	NM_002944.2	1973	Gga/Aga					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944947	31944947	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	122	412	0	ENST00000340398.3:c.154C>T	p.Arg52Cys	p.R52C	ENST00000340398	NM_001013699.2	52	Cgt/Tgt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100933480	100933480	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	93	449	0	ENST00000325455.5:c.1910G>A	p.Arg637Gln	p.R637Q	ENST00000325455	NM_001202474.3	637	cGa/cAa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50455097	50455097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	151	443	0	ENST00000331340.3:c.644C>T	p.Ser215Phe	p.S215F	ENST00000331340	NM_006060.4	215	tCt/tTt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858642	9858642	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	203	680	0	ENST00000330684.3:c.2759G>A	p.Arg920Lys	p.R920K	ENST00000330684	NM_001134407.1	920	aGa/aAa					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72829302	72829302	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1222	186	914	0	ENST00000268489.5:c.7279G>A	p.Asp2427Asn	p.D2427N	ENST00000268489	NM_006885.3	2427	Gat/Aat					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52597489	52597489	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	129	485	0	ENST00000394830.3:c.3821A>G	p.Lys1274Arg	p.K1274R	ENST00000394830	NM_018313.4	1274	aAg/aGg					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119582407	119582407	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199730714		P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	100	317	3	ENST00000316626.5:c.994C>T	p.Arg332Cys	p.R332C	ENST00000316626		332	Cgt/Tgt					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106162519	106162519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	91	457	0	ENST00000380013.4:c.3433G>A	p.Gly1145Ser	p.G1145S	ENST00000380013	NM_001127208.2	1145	Ggt/Agt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187535417	187535417	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	88	469	0	ENST00000441802.2:c.9157C>T	p.Arg3053Cys	p.R3053C	ENST00000441802	NM_005245.3	3053	Cgc/Tgc					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876163	35876163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	276	515	0	ENST00000303115.3:c.955G>A	p.Glu319Lys	p.E319K	ENST00000303115	NM_002185.3	319	Gaa/Aaa					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57752324	57752324	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	145	497	0	ENST00000274289.3:c.1249G>C	p.Asp417His	p.D417H	ENST00000274289	NM_006622.3	417	Gat/Cat					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149439282	149439282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	152	548	1	ENST00000286301.3:c.2113G>A	p.Glu705Lys	p.E705K	ENST00000286301	NM_005211.3	705	Gag/Aag					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30680245	30680245	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	190	697	0	ENST00000376406.3:c.1474T>G	p.Phe492Val	p.F492V	ENST00000376406	NM_014641.2	492	Ttt/Gtt					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81388107	81388107	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	146	434	0	ENST00000222390.5:c.268G>A	p.Asp90Asn	p.D90N	ENST00000222390	NM_000601.4	90	Gat/Aat					NEWRECORD																																																																									
CDK6	0	MSKCC	GRCh37	7	92462418	92462418	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	155	401	0	ENST00000265734.4:c.220C>T	p.Pro74Ser	p.P74S	ENST00000265734	NM_001259.6	74	Ccc/Tcc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509582	106509582	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	175	457	0	ENST00000359195.3:c.1576C>T	p.Pro526Ser	p.P526S	ENST00000359195	NM_002649.2	526	Ccg/Tcg					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128851916	128851916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	192	594	0	ENST00000249373.3:c.1988C>T	p.Pro663Leu	p.P663L	ENST00000249373	NM_005631.4	663	cCa/cTa					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140500189	140500189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	238	742	2	ENST00000288602.6:c.953C>T	p.Pro318Leu	p.P318L	ENST00000288602	NM_004333.4	318	cCt/cTt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8376627	8376627	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	174	518	1	ENST00000356435.5:c.4486C>T	p.Arg1496Ter	p.R1496*	ENST00000356435		1496	Cga/Tga					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760714	133760714	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	131	504	1	ENST00000318560.5:c.3037C>T	p.Arg1013Trp	p.R1013W	ENST00000318560	NM_005157.4	1013	Cgg/Tgg					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43615611	43615611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	167	464	0	ENST00000355710.3:c.2690G>A	p.Arg897Gln	p.R897Q	ENST00000355710	NM_020975.4	897	cGa/cAa					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851833	63851833	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	186	522	0	ENST00000279873.7:c.2611C>T	p.Pro871Ser	p.P871S	ENST00000279873	NM_032199.2	871	Cct/Tct					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64138122	64138122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	97	329	2	ENST00000334205.4:c.2045C>T	p.Ser682Leu	p.S682L	ENST00000334205	NM_003942.2	682	tCg/tTg					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100933403	100933403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	185	809	1	ENST00000325455.5:c.1987C>T	p.Pro663Ser	p.P663S	ENST00000325455	NM_001202474.3	663	Cca/Tca					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118339509	118339509	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	110	427	0	ENST00000534358.1:c.452T>A	p.Phe151Tyr	p.F151Y	ENST00000534358	NM_005933.3	151	tTt/tAt					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119142579	119142579	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	131	486	1	ENST00000264033.4:c.578C>T	p.Ala193Val	p.A193V	ENST00000264033	NM_005188.3	193	gCt/gTt					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4387932	4387932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	199	605	0	ENST00000261254.3:c.418G>A	p.Glu140Lys	p.E140K	ENST00000261254	NM_001759.3	140	Gaa/Aaa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243878	46243878	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	149	493	0	ENST00000334344.6:c.1972C>T	p.Gln658Ter	p.Q658*	ENST00000334344	NM_152641.2	658	Caa/Taa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2132497	2132497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	119	514	0	ENST00000219476.3:c.3875C>T	p.Ser1292Phe	p.S1292F	ENST00000219476	NM_000548.3	1292	tCc/tTc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857458	9857458	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	101	445	0	ENST00000330684.3:c.3943G>A	p.Asp1315Asn	p.D1315N	ENST00000330684	NM_001134407.1	1315	Gac/Aac					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857874	9857874	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	147	576	0	ENST00000330684.3:c.3527A>C	p.Glu1176Ala	p.E1176A	ENST00000330684	NM_001134407.1	1176	gAg/gCg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9927961	9927961	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	133	507	0	ENST00000330684.3:c.1777+1G>A		p.X593_splice	ENST00000330684	NM_001134407.1	593						NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14014215	14014215	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	57	182	1	ENST00000311895.7:c.193C>A	p.Gln65Lys	p.Q65K	ENST00000311895	NM_005236.2	65	Cag/Aag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993296	72993296	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1167	197	797	1	ENST00000268489.5:c.749C>T	p.Ser250Phe	p.S250F	ENST00000268489	NM_006885.3	250	tCt/tTt					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89346466	89346466	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202219869		P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	160	748	0	ENST00000301030.4:c.6484C>T	p.Pro2162Ser	p.P2162S	ENST00000301030	NM_001256183.1	2162	Cct/Tct					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29554622	29554622	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	146	462	0	ENST00000358273.4:c.2407C>T	p.Gln803Ter	p.Q803*	ENST00000358273	NM_001042492.2	803	Cag/Tag					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42797381	42797381	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	98	482	1	ENST00000575354.2:c.3743C>T	p.Pro1248Leu	p.P1248L	ENST00000575354	NM_015125.3	1248	cCa/cTa					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36206818	36206818	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	98	249	1	ENST00000300305.3:c.694C>T	p.Arg232Trp	p.R232W	ENST00000300305		232	Cgg/Tgg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41572353	41572353	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	182	519	0	ENST00000263253.7:c.4882G>A	p.Asp1628Asn	p.D1628N	ENST00000263253	NM_001429.3	1628	Gat/Aat					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53247070	53247070	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	294	400	0	ENST00000375401.3:c.430C>T	p.Pro144Ser	p.P144S	ENST00000375401	NM_004187.3	144	Cca/Tca					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411267	63411267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	207	318	3	ENST00000330258.3:c.1900C>T	p.Arg634Cys	p.R634C	ENST00000330258	NM_152424.3	634	Cgt/Tgt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123220510	123220510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	555	412	0	ENST00000218089.9:c.3167C>T	p.Thr1056Ile	p.T1056I	ENST00000218089	NM_001042749.1	1056	aCc/aTc					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729162	66729163	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	144	493	0	ENST00000307102.5:c.370_371delinsAT	p.Pro124Met	p.P124M	ENST00000307102	NM_002755.3	124	CCg/ATg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577142	7577143	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0010115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	172	633	0	ENST00000269305.4:c.795_796delinsAA	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	265	ctGGga/ctAAga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577609	7577609	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0014861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			201	491	603	2	ENST00000269305.4:c.673-1G>C		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55575657	55575657	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	101	672	0	ENST00000288135.5:c.1183T>A	p.Ser395Thr	p.S395T	ENST00000288135	NM_000222.2	395	Tcc/Acc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339610	116339610	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014861-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	74	405	0	ENST00000397752.3:c.472G>A	p.Val158Ile	p.V158I	ENST00000397752	NM_000245.2	158	Gtt/Att					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578204	7578204	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	469	399	0	ENST00000269305.4:c.645T>G	p.Ser215Arg	p.S215R	ENST00000269305	NM_001126112.2	215	agT/agG					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180057744	180057744	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138831198		P-0010513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	115	278	0	ENST00000261937.6:c.211G>A	p.Gly71Arg	p.G71R	ENST00000261937	NM_182925.4	71	Gga/Aga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116538	112116538	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs749479682		P-0010513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	151	280	0	ENST00000257430.4:c.583C>T	p.Gln195Ter	p.Q195*	ENST00000257430	NM_000038.5	195	Caa/Taa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142275343	142275343	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	160	324	0	ENST00000350721.4:c.1960G>A	p.Ala654Thr	p.A654T	ENST00000350721	NM_001184.3	654	Gca/Aca					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106158460	106158460	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			254	154	294	0	ENST00000380013.4:c.3361G>T	p.Asp1121Tyr	p.D1121Y	ENST00000380013	NM_001127208.2	1121	Gat/Tat					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152265629	152265629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	86	134	0	ENST00000206249.3:c.1082C>A	p.Ala361Glu	p.A361E	ENST00000206249	NM_000125.3	361	gCg/gAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0010592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	154	390	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120464899	120464899	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	71	269	0	ENST00000256646.2:c.5173A>T	p.Lys1725Ter	p.K1725*	ENST00000256646	NM_024408.3	1725	Aag/Tag					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193121540	193121540	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	116	437	0	ENST00000367435.3:c.938G>C	p.Gly313Ala	p.G313A	ENST00000367435	NM_024529.4	313	gGa/gCa					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226555255	226555255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	152	537	0	ENST00000366794.5:c.2332C>T	p.Leu778Phe	p.L778F	ENST00000366794	NM_001618.3	778	Ctc/Ttc					NEWRECORD																																																																									
LMO1	0	MSKCC	GRCh37	11	8248637	8248637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	47	420	0	ENST00000335790.3:c.250A>G	p.Thr84Ala	p.T84A	ENST00000335790	NM_002315.2	84	Acc/Gcc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436806	110436806	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	216	451	0	ENST00000375856.3:c.1595A>G	p.Asp532Gly	p.D532G	ENST00000375856	NM_003749.2	532	gAc/gGc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	76	539	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014942-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	112	516	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	595	440	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8528633	8528633	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	260	698	0	ENST00000356435.5:c.499G>T	p.Asp167Tyr	p.D167Y	ENST00000356435		167	Gac/Tac					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023006	27023006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			69	37	66	0	ENST00000324856.7:c.112G>A	p.Glu38Lys	p.E38K	ENST00000324856	NM_006015.4	38	Gag/Aag					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162745988	162745988	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	202	528	0	ENST00000367921.3:c.2111T>G	p.Leu704Arg	p.L704R	ENST00000367921	NM_006182.2	704	cTt/cGt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259510	89259510	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	222	518	0	ENST00000336596.2:c.654G>T	p.Met218Ile	p.M218I	ENST00000336596	NM_005233.5	218	atG/atT					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55598048	55598048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	99	611	0	ENST00000288135.5:c.2245G>A	p.Glu749Lys	p.E749K	ENST00000288135	NM_000222.2	749	Gaa/Aaa					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30673010	30673010	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	271	743	0	ENST00000376406.3:c.3950C>G	p.Ser1317Cys	p.S1317C	ENST00000376406	NM_014641.2	1317	tCc/tGc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117706881	117706881	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	241	554	0	ENST00000368508.3:c.2269G>T	p.Gly757Cys	p.G757C	ENST00000368508	NM_002944.2	757	Ggt/Tgt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971024	21971024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	183	410	0	ENST00000304494.5:c.334C>T	p.Arg112Cys	p.R112C	ENST00000304494	NM_000077.4	112	Cgt/Tgt					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971024	21971024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	183	410	0	ENST00000304494.5:c.334C>T	p.Arg112Cys	p.R112C	ENST00000304494	NM_000077.4	112	Cgt/Tgt					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971024	21971024	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	183	410	0	ENST00000304494.5:c.334C>T	p.Arg112Cys	p.R112C	ENST00000304494	NM_000077.4	112	Cgt/Tgt					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36846911	36846911	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	266	614	0	ENST00000358127.4:c.1028G>T	p.Gly343Val	p.G343V	ENST00000358127	NM_001280556.1	343	gGg/gTg					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70406181	70406181	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	79	391	0	ENST00000373644.4:c.3695C>T	p.Pro1232Leu	p.P1232L	ENST00000373644	NM_030625.2	1232	cCc/cTc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70406187	70406187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	83	416	0	ENST00000373644.4:c.3701C>T	p.Thr1234Ile	p.T1234I	ENST00000373644	NM_030625.2	1234	aCa/aTa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29002033	29002033	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	76	438	0	ENST00000282397.4:c.1132G>C	p.Glu378Gln	p.E378Q	ENST00000282397	NM_002019.4	378	Gag/Cag					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14042051	14042051	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	186	558	0	ENST00000311895.7:c.2598G>C	p.Leu866Phe	p.L866F	ENST00000311895	NM_005236.2	866	ttG/ttC					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40362473	40362473	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	409	971	0	ENST00000293328.3:c.1723G>T	p.Asp575Tyr	p.D575Y	ENST00000293328	NM_012448.3	575	Gac/Tac					NEWRECORD																																																																									
CALR	0	MSKCC	GRCh37	19	13049530	13049530	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	168	765	1	ENST00000316448.5:c.37G>T	p.Gly13Cys	p.G13C	ENST00000316448	NM_004343.3	13	Ggc/Tgc					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30648409	30648450	+	inframe_deletion	In_Frame_Del	DEL	CTGCACATCGTCCTGTGGACGCGTATCGCCAGCACGATCCCA	CTGCACATCGTCCTGTGGACGCGTATCGCCAGCACGATCCCA	-			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	109	513	0	ENST00000359013.4:c.35_76del	p.Leu12_Pro25del	p.L12_P25del	ENST00000359013	NM_001024847.2	12	CTGCACATCGTCCTGTGGACGCGTATCGCCAGCACGATCCCA/-					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41385240	41385240	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	215	575	0	ENST00000373198.4:c.721del	p.Arg241ValfsTer28	p.R241Vfs*28	ENST00000373198	NM_133170.3	241	Cgt/gt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578280	7578280	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs876660825		P-0010959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	8	430	0	ENST00000269305.4:c.569C>T	p.Pro190Leu	p.P190L	ENST00000269305	NM_001126112.2	190	cCt/cTt					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72495659	72495659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	105	345	0	ENST00000477973.2:c.411G>A	p.Gly138Asp	p.G138D	ENST00000477973	NM_012234.5	138	gGc/gAc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952135	178952135	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010959-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	78	268	0	ENST00000263967.3:c.3190del	p.Gln1064SerfsTer4	p.Q1064Sfs*4	ENST00000263967	NM_006218.2	1064	Cag/ag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011327-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			664	39	504	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5215359	5215359	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011327-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			682	36	719	0	ENST00000357368.4:c.4259A>G	p.Asn1420Ser	p.N1420S	ENST00000357368	NM_002850.3	1420	aAc/aGc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	154	365	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	154	365	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	154	365	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	226	406	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18271734	18271734	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012926-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	84	509	0	ENST00000222254.8:c.421G>A	p.Asp141Asn	p.D141N	ENST00000222254	NM_005027.3	141	Gac/Aac					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	338	380	1	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	507	615	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175175	112175175	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	57	182	0	ENST00000257430.4:c.3885del	p.Ala1296GlnfsTer9	p.A1296Qfs*9	ENST00000257430	NM_000038.5	1295	gAa/ga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	198	518	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120160	70120160	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	149	173	2	ENST00000245479.2:c.1162G>T	p.Glu388Ter	p.E388*	ENST00000245479	NM_000346.3	388	Gag/Tag					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16242757	16242757	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	227	660	2	ENST00000375759.3:c.1378C>T	p.Arg460Cys	p.R460C	ENST00000375759	NM_015001.2	460	Cgc/Tgc					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022944	31022944	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013407-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	99	509	0	ENST00000375687.4:c.2429A>T	p.Asp810Val	p.D810V	ENST00000375687	NM_015338.5	810	gAc/gTc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0014402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	413	794	0	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577079	7577079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			525	405	761	1	ENST00000269305.4:c.859G>A	p.Glu287Lys	p.E287K	ENST00000269305	NM_001126112.2	287	Gag/Aag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0014402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	254	1192	1	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119148498	119148498	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	140	435	0	ENST00000264033.4:c.1039C>G	p.Pro347Ala	p.P347A	ENST00000264033	NM_005188.3	347	Cct/Gct					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435081	49435081	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			663	315	587	0	ENST00000301067.7:c.6472G>T	p.Glu2158Ter	p.E2158*	ENST00000301067	NM_003482.3	2158	Gag/Tag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49436029	49436030	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0014402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	447	573	0	ENST00000301067.7:c.5951_5952delCC	p.Pro1984HisfsTer8	p.P1984Hfs*8	ENST00000301067	NM_003482.3	1984	cCC/c					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111884787	111884787	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	267	530	3	ENST00000341259.2:c.876G>T	p.Glu292Asp	p.E292D	ENST00000341259	NM_005475.2	292	gaG/gaT					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556861	29556861	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	83	390	0	ENST00000358273.4:c.2859G>C	p.Leu953Phe	p.L953F	ENST00000358273	NM_001042492.2	953	ttG/ttC					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56174855	56174855	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	293	485	0	ENST00000399503.3:c.2014G>A	p.Glu672Lys	p.E672K	ENST00000399503	NM_005921.1	672	Gaa/Aaa					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158464	26158464	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014402-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1968	378	858	0	ENST00000289316.2:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000289316	NM_138720.2	23	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	132	583	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	61	458	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112128161	112128161	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	56	468	0	ENST00000257430.4:c.664C>T	p.Gln222Ter	p.Q222*	ENST00000257430	NM_000038.5	222	Cag/Tag					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89349373	89349373	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111737495		P-0010105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1465	227	942	1	ENST00000301030.4:c.3577G>A	p.Ala1193Thr	p.A1193T	ENST00000301030	NM_001256183.1	1193	Gcg/Acg					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713195	30713195	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	62	295	0	ENST00000359013.4:c.596del	p.Pro199HisfsTer24	p.P199Hfs*24	ENST00000359013	NM_001024847.2	199	Cca/ca					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	149	373	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993237	72993237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	78	793	2	ENST00000268489.5:c.808G>A	p.Asp270Asn	p.D270N	ENST00000268489	NM_006885.3	270	Gat/Aat					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67202594	67202594	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			999	83	599	0	ENST00000312629.5:c.1403C>G	p.Ser468Ter	p.S468*	ENST00000312629	NM_003952.2	468	tCa/tGa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108175580	108175580	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			221	149	280	0	ENST00000278616.4:c.5674+1G>A		p.X1892_splice	ENST00000278616	NM_000051.3	1892						NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15366345	15366345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	64	461	0	ENST00000263377.2:c.1810G>C	p.Glu604Gln	p.E604Q	ENST00000263377	NM_058243.2	604	Gag/Cag					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47637260	47637260	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			570	93	430	0	ENST00000233146.2:c.394G>A	p.Glu132Lys	p.E132K	ENST00000233146	NM_000251.2	132	Gaa/Aaa					NEWRECORD																																																																									
FAT1	2195	MSKCC	GRCh37	4	187629199	187629199	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	207	471	0	ENST00000441802.2:c.1783G>A	p.Asp595Asn	p.D595N	ENST00000441802	NM_005245.3	595	Gat/Aat					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38942414	38942414	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	56	389	0	ENST00000357387.3:c.5119G>A	p.Glu1707Lys	p.E1707K	ENST00000357387	NM_152756.3	1707	Gaa/Aaa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151946996	151946996	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			629	53	485	0	ENST00000262189.6:c.1778C>G	p.Ser593Ter	p.S593*	ENST00000262189	NM_170606.2	593	tCa/tGa					NEWRECORD																																																																									
EGFL7	0	MSKCC	GRCh37	9	139562813	139562813	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0015025-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	54	615	0	ENST00000308874.7:c.79G>A	p.Gly27Ser	p.G27S	ENST00000308874		27	Ggc/Agc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	328	453	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	341	438	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261						NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48650816	48650816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	296	831	2	ENST00000376670.3:c.685G>A	p.Gly229Ser	p.G229S	ENST00000376670	NM_002049.3	229	Ggc/Agc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	537	753	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	664	559	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48878081	48878112	+	frameshift_variant	Frame_Shift_Del	DEL	CACCGCCGCCGCTGCCGCCGCGGAACCCCCGG	CACCGCCGCCGCTGCCGCCGCGGAACCCCCGG	-			P-0013628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	240	154	0	ENST00000267163.4:c.45_76delTGCCGCCGCGGAACCCCCGGCACCGCCGCCGC	p.Ala17ProfsTer3	p.A17Pfs*3	ENST00000267163	NM_000321.2	11	gcCACCGCCGCCGCTGCCGCCGCGGAACCCCCGGca/gcca					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41420067	41420067	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	110	538	0	ENST00000373198.4:c.254G>A	p.Gly85Asp	p.G85D	ENST00000373198	NM_133170.3	85	gGc/gAc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41533694	41533694	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013628-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	56	691	0	ENST00000263253.7:c.1660G>A	p.Gly554Ser	p.G554S	ENST00000263253	NM_001429.3	554	Ggt/Agt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	131	258	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	283	433	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114711339	114711339	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	230	539	0	ENST00000543371.1:c.354del	p.Asn118LysfsTer37	p.N118Kfs*37	ENST00000543371	NM_001198531.1	118	aaC/aa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174379	112174379	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	125	319	0	ENST00000257430.4:c.3090del	p.Lys1030AsnfsTer7	p.K1030Nfs*7	ENST00000257430	NM_000038.5	1030	Aaa/aa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175919	112176015	+	frameshift_variant	Frame_Shift_Del	DEL	AAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACT	AAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACT	-			P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	63	370	0	ENST00000257430.4:c.4629_4725del	p.Glu1544LysfsTer74	p.E1544Kfs*74	ENST00000257430	NM_000038.5	1543	aAAGAATCAAATGAAAACCAAGAGAAAGAGGCAGAAAAAACTATTGATTCTGAAAAGGACCTATTAGATGATTCAGATGATGATGATATTGAAATACTa/aa					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371915	55371915	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			212	27	166	1	ENST00000297316.4:c.605A>G	p.His202Arg	p.H202R	ENST00000297316	NM_022454.3	202	cAc/cGc					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117864942	117864942	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014010-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	70	609	0	ENST00000297338.2:c.1167T>G	p.Phe389Leu	p.F389L	ENST00000297338	NM_006265.2	389	ttT/ttG					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1218423	1218423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	482	397	0	ENST00000326873.7:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000326873	NM_000455.4	100	Caa/Taa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187557927	187557927	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	281	419	0	ENST00000441802.2:c.3784C>T	p.Arg1262Ter	p.R1262*	ENST00000441802	NM_005245.3	1262	Cga/Tga					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135802689	135802689	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	163	240	0	ENST00000298552.3:c.109C>T	p.Arg37Cys	p.R37C	ENST00000298552	NM_001162426.1	37	Cgt/Tgt					NEWRECORD																																																																									
FGF4	0	MSKCC	GRCh37	11	69589600	69589600	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	255	331	2	ENST00000168712.1:c.253C>T	p.Arg85Trp	p.R85W	ENST00000168712	NM_002007.2	85	Cgg/Tgg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49416062	49416062	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	367	604	1	ENST00000301067.7:c.16412+1G>A		p.X5471_splice	ENST00000301067	NM_003482.3	5471						NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9892293	9892293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	190	274	0	ENST00000330684.3:c.2197G>A	p.Ala733Thr	p.A733T	ENST00000330684	NM_001134407.1	733	Gca/Aca					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10267075	10267075	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	116	330	0	ENST00000340748.4:c.1343C>A	p.Ser448Tyr	p.S448Y	ENST00000340748		448	tCt/tAt					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30069435	30069435	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	329	275	1	ENST00000338641.4:c.1300G>T	p.Glu434Ter	p.E434*	ENST00000338641	NM_000268.3	434	Gag/Tag					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41572831	41572831	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	494	507	0	ENST00000263253.7:c.5116G>T	p.Glu1706Ter	p.E1706*	ENST00000263253	NM_001429.3	1706	Gag/Tag					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139400304	139400304	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	97	115	0	ENST00000277541.6:c.4044del	p.Asp1348GlufsTer97	p.D1348Efs*97	ENST00000277541	NM_017617.3	1348	gaC/ga					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120497811	120497812	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0010591-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	187	284	0	ENST00000256646.2:c.2070_2071del	p.Cys691SerfsTer51	p.C691Sfs*51	ENST00000256646	NM_024408.3	690	ccCTgt/ccgt					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	206	606	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46511751	46511751	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010656-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	54	395	0	ENST00000262741.5:c.1026del	p.Phe342LeufsTer40	p.F342Lfs*40	ENST00000262741	NM_003629.3	342	ttT/tt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	9	341	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108119726	108119726	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	15	335	0	ENST00000278616.4:c.1132del	p.Ser378ValfsTer12	p.S378Vfs*12	ENST00000278616	NM_000051.3	378	Agt/gt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	545	578	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98220133	98220362	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTAACCATGGACCTCACCACCTCGAGTAGAATAAACATATTACGGATGATGCAAGCTATACCCTCCTCCAGAGGCCCAGACATAAACAAAACTTCCCGGCTGCAGAAAGAGCTATGCTGAAAGGAATTTGACTTCCACAAAGCCCCTTATAATACACTCACAATGATCCCGGCCGTCCAGGGGTTCAGAAGGAAGACAGCGCACACGAGGAATGTGCAGGCCAACACCA	CTTAACCATGGACCTCACCACCTCGAGTAGAATAAACATATTACGGATGATGCAAGCTATACCCTCCTCCAGAGGCCCAGACATAAACAAAACTTCCCGGCTGCAGAAAGAGCTATGCTGAAAGGAATTTGACTTCCACAAAGCCCCTTATAATACACTCACAATGATCCCGGCCGTCCAGGGGTTCAGAAGGAAGACAGCGCACACGAGGAATGTGCAGGCCAACACCA	-			P-0013359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			16	102	17	0	ENST00000331920.6:c.3101_3168+162del		p.X1034_splice	ENST00000331920	NM_000264.3	1034						NEWRECORD																																																																									
TEK	0	MSKCC	GRCh37	9	27158132	27158132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014799-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	82	359	0	ENST00000380036.4:c.356G>A	p.Arg119His	p.R119H	ENST00000380036	NM_000459.3	119	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	472	320	0	ENST00000269305.4:c.487T>G	p.Tyr163Asp	p.Y163D	ENST00000269305	NM_001126112.2	163	Tac/Gac					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266518	198266518	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	45	393	0	ENST00000335508.6:c.2318T>A	p.Leu773His	p.L773H	ENST00000335508	NM_012433.2	773	cTt/cAt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212495315	212495315	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	133	290	0	ENST00000342788.4:c.1951C>G	p.Pro651Ala	p.P651A	ENST00000342788	NM_005235.2	651	Ccc/Gcc					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128753187	128753193	+	frameshift_variant	Frame_Shift_Del	DEL	CGGAACT	CGGAACT	-			P-0012674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	81	165	0	ENST00000377970.2:c.1349_1355del	p.Arg450LeufsTer7	p.R450Lfs*7	ENST00000377970	NM_002467.4	450	CGGAACTct/ct					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48023105	48023116	+	inframe_deletion	In_Frame_Del	DEL	AACGTGCAGATG	AACGTGCAGATG	-			P-0012674-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	476	579	0	ENST00000234420.5:c.532_543del	p.Arg178_Glu181del	p.R178_E181del	ENST00000234420	NM_000179.2	177	cAACGTGCAGATGaa/caa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0013457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	470	708	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158594951	158594951	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1025	601	951	0	ENST00000263640.3:c.1395+1G>A		p.X465_splice	ENST00000263640	NM_001105.4	465						NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128852054	128852054	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013457-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	338	665	0	ENST00000249373.3:c.2126G>T	p.Arg709Leu	p.R709L	ENST00000249373	NM_005631.4	709	cGg/cTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579346	7579346	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	456	466	0	ENST00000269305.4:c.341del	p.Leu114CysfsTer9	p.L114Cfs*9	ENST00000269305	NM_001126112.2	114	tTg/tg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117622211	117622211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	52	538	0	ENST00000368508.3:c.6659A>T	p.Asn2220Ile	p.N2220I	ENST00000368508	NM_002944.2	2220	aAt/aTt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55963918	55963918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	1037	488	0	ENST00000263923.4:c.2525G>T	p.Arg842Leu	p.R842L	ENST00000263923	NM_002253.2	842	cGt/cTt					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056623	26056623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	135	126	0	ENST00000343677.2:c.34G>A	p.Ala12Thr	p.A12T	ENST00000343677	NM_005319.3	12	Gcg/Acg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163567	32163567	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	239	368	0	ENST00000375023.3:c.5659G>T	p.Ala1887Ser	p.A1887S	ENST00000375023	NM_004557.3	1887	Gct/Tct					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5126332	5126332	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	23	275	0	ENST00000381652.3:c.3178-1G>T		p.X1060_splice	ENST00000381652	NM_004972.3	1060						NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97888850	97888850	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	157	584	0	ENST00000289081.3:c.857G>T	p.Cys286Phe	p.C286F	ENST00000289081	NM_000136.2	286	tGc/tTc					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63850765	63850765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	88	535	0	ENST00000279873.7:c.1543G>A	p.Glu515Lys	p.E515K	ENST00000279873	NM_032199.2	515	Gag/Aag					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32439135	32439135	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	104	523	0	ENST00000332351.3:c.938C>A	p.Ala313Asp	p.A313D	ENST00000332351	NM_024426.4	313	gCc/gAc					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32456858	32456858	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	40	146	0	ENST00000332351.3:c.34C>A	p.Pro12Thr	p.P12T	ENST00000332351	NM_024426.4	12	Ccg/Acg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435132	49435132	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	44	270	0	ENST00000301067.7:c.6421G>T	p.Gly2141Trp	p.G2141W	ENST00000301067	NM_003482.3	2141	Ggg/Tgg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435962	49435962	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	173	569	3	ENST00000301067.7:c.6019G>T	p.Glu2007Ter	p.E2007*	ENST00000301067	NM_003482.3	2007	Gag/Tag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49436377	49436377	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	158	560	1	ENST00000301067.7:c.5834C>T	p.Pro1945Leu	p.P1945L	ENST00000301067	NM_003482.3	1945	cCa/cTa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444060	49444060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	63	447	0	ENST00000301067.7:c.3311C>T	p.Pro1104Leu	p.P1104L	ENST00000301067	NM_003482.3	1104	cCc/cTc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436102	110436102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	64	522	0	ENST00000375856.3:c.2299C>T	p.Leu767Phe	p.L767F	ENST00000375856	NM_003749.2	767	Ctc/Ttc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41961468	41961468	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	84	834	0	ENST00000219905.7:c.376G>T	p.Asp126Tyr	p.D126Y	ENST00000219905	NM_001164273.1	126	Gat/Tat					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41999925	41999925	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	119	545	1	ENST00000219905.7:c.2189-1G>T		p.X730_splice	ENST00000219905	NM_001164273.1	730						NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88669570	88669570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	76	472	0	ENST00000360948.2:c.1328G>T	p.Cys443Phe	p.C443F	ENST00000360948	NM_001012338.2	443	tGt/tTt					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63531743	63531743	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	78	552	0	ENST00000307078.5:c.2237+1G>C		p.X746_splice	ENST00000307078	NM_004655.3	746						NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56376685	56376685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	236	719	0	ENST00000348428.3:c.725G>T	p.Ser242Ile	p.S242I	ENST00000348428	NM_006785.3	242	aGc/aTc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597399	10597399	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	181	535	2	ENST00000171111.5:c.1804A>G	p.Ser602Gly	p.S602G	ENST00000171111	NM_203500.1	602	Agt/Ggt					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18272140	18272140	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	11	27	0	ENST00000222254.8:c.650A>T	p.His217Leu	p.H217L	ENST00000222254	NM_005027.3	217	cAc/cTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944581	40944581	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	36	324	0	ENST00000373198.4:c.1921G>A	p.Asp641Asn	p.D641N	ENST00000373198	NM_133170.3	641	Gac/Aac					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70348473	70348473	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	207	338	0	ENST00000374080.3:c.3380C>A	p.Ser1127Ter	p.S1127*	ENST00000374080		1127	tCg/tAg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76919036	76919036	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	156	202	0	ENST00000373344.5:c.3955C>T	p.Gln1319Ter	p.Q1319*	ENST00000373344	NM_000489.3	1319	Caa/Taa					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93606324	93606324	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	78	498	0	ENST00000375746.1:c.146del	p.Gly49ValfsTer22	p.G49Vfs*22	ENST00000375746	NM_001174167.1	48	ctG/ct					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1314978	1314978	+	downstream_gene_variant	3'Flank	DEL	T	T	-			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	237	538	0				ENST00000381566								NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120491182	120491183	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0012540-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	261	398	0	ENST00000256646.2:c.2606_2607delinsCT	p.Arg869Pro	p.R869P	ENST00000256646	NM_024408.3	869	cGG/cCT					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			307	347	396	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056628	26056628	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014517-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	24	166	0	ENST00000343677.2:c.29C>T	p.Ala10Val	p.A10V	ENST00000343677	NM_005319.3	10	gCt/gTt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	49	471	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67200224	67200242	+	frameshift_variant	Frame_Shift_Del	DEL	ATCACGCTGGCCCTGGGCC	ATCACGCTGGCCCTGGGCC	-			P-0014623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1191	67	574	0	ENST00000312629.5:c.535_553del	p.Thr179SerfsTer26	p.T179Sfs*26	ENST00000312629	NM_003952.2	178	ATCACGCTGGCCCTGGGCCat/at					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15285038	15285038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1023	93	572	0	ENST00000263388.2:c.4577G>A	p.Arg1526His	p.R1526H	ENST00000263388	NM_000435.2	1526	cGt/cAt					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106157635	106157635	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	31	389	0	ENST00000380013.4:c.2536G>T	p.Glu846Ter	p.E846*	ENST00000380013	NM_001127208.2	846	Gaa/Taa					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153258992	153258992	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	22	270	0	ENST00000281708.4:c.823del	p.Gln275SerfsTer67	p.Q275Sfs*67	ENST00000281708	NM_033632.3	275	Cag/ag					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149505000	149505025	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGACTGACCCAGCACAAGCTGGTCCC	GGACTGACCCAGCACAAGCTGGTCCC	-			P-0014623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	50	258	0	ENST00000261799.4:c.1790_1807+8del		p.X597_splice	ENST00000261799	NM_002609.3	597						NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151859465	151859465	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014623-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			719	49	417	0	ENST00000262189.6:c.11197G>T	p.Glu3733Ter	p.E3733*	ENST00000262189	NM_170606.2	3733	Gag/Tag					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3820710	3820710	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	224	517	3	ENST00000262367.5:c.2741G>A	p.Ser914Asn	p.S914N	ENST00000262367	NM_004380.2	914	aGc/aAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579494	7579494	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	422	500	0	ENST00000269305.4:c.193A>T	p.Arg65Ter	p.R65*	ENST00000269305	NM_001126112.2	65	Aga/Tga					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45855889	45855889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	227	452	5	ENST00000391945.4:c.1921C>T	p.Arg641Trp	p.R641W	ENST00000391945	NM_000400.3	641	Cgg/Tgg					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48026672	48026672	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	48	294	0	ENST00000234420.5:c.1550T>C	p.Ile517Thr	p.I517T	ENST00000234420	NM_000179.2	517	aTt/aCt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112162933	112162934	+	stop_gained	Nonsense_Mutation	DNP	GT	GT	TG			P-0014133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			118	151	489	1	ENST00000257430.4:c.1537_1538delinsTG	p.Val513Ter	p.V513*	ENST00000257430	NM_000038.5	513	GTa/TGa					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38282117	38282117	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014133-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	242	513	0	ENST00000425967.3:c.939C>A	p.Asp313Glu	p.D313E	ENST00000425967	NM_001174067.1	313	gaC/gaA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	391	662	2	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0014855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			156	45	178	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55594027	55594027	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	149	442	0	ENST00000288135.5:c.1813G>A	p.Glu605Lys	p.E605K	ENST00000288135	NM_000222.2	605	Gag/Aag					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12032603	12032603	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0014855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			261	302	501	0	ENST00000353533.5:c.1039T>C	p.Cys347Arg	p.C347R	ENST00000353533	NM_003010.3	347	Tgc/Cgc					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741614	145741614	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014855-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			769	303	724	0	ENST00000428558.2:c.889G>C	p.Asp297His	p.D297H	ENST00000428558	NM_004260.3	297	Gac/Cac					NEWRECORD																																																																									
H3F3A	0	MSKCC	GRCh37	1	226253427	226253427	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			59	29	29	0	ENST00000366813.1:c.199C>T	p.Pro67Ser	p.P67S	ENST00000366813		67	Ccc/Tcc					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103510680	103510680	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	206	331	0	ENST00000355739.4:c.584G>A	p.Ser195Asn	p.S195N	ENST00000355739	NM_000123.3	195	aGc/aAc					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618629	37618629	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	637	484	1	ENST00000447079.4:c.305C>A	p.Ser102Ter	p.S102*	ENST00000447079	NM_015083.1	102	tCa/tAa					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618727	37618727	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014390-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			888	489	442	0	ENST00000447079.4:c.403G>T	p.Glu135Ter	p.E135*	ENST00000447079	NM_015083.1	135	Gaa/Taa					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111856521	111856521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013893-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			311	38	374	0	ENST00000341259.2:c.572C>T	p.Pro191Leu	p.P191L	ENST00000341259	NM_005475.2	191	cCg/cTg					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81916897	81916897	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013893-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			830	173	1006	0	ENST00000359376.3:c.716C>G	p.Ser239Cys	p.S239C	ENST00000359376	NM_002661.3	239	tCt/tGt					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148523634	148523634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013893-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			557	134	439	0	ENST00000320356.2:c.819G>C	p.Gln273His	p.Q273H	ENST00000320356	NM_004456.4	273	caG/caC					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900273	101900273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013893-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			782	163	714	0	ENST00000374994.4:c.707C>T	p.Ser236Phe	p.S236F	ENST00000374994	NM_004612.2	236	tCt/tTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			718	179	613	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57470704	57470704	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	38	305	0	ENST00000371085.3:c.177G>C	p.Gln59His	p.Q59H	ENST00000371085	NM_000516.4	59	caG/caC					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37091976	37091976	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			559	100	363	0	ENST00000231790.2:c.2104-1G>C		p.X702_splice	ENST00000231790	NM_000249.3	702						NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180057229	180057229	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014802-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	178	578	0	ENST00000261937.6:c.509G>A	p.Arg170His	p.R170H	ENST00000261937	NM_182925.4	170	cGc/cAc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0014909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	132	430	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	534286	534286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	193	570	1	ENST00000311189.7:c.37G>C	p.Gly13Arg	p.G13R	ENST00000311189		13	Ggt/Cgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			916	128	598	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0014909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	28	535	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89712015	89712015	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0014909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			358	93	227	0	ENST00000371953.3:c.633C>A	p.Cys211Ter	p.C211*	ENST00000371953	NM_000314.4	211	tgC/tgA					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453153	140453153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	146	492	0	ENST00000288602.6:c.1782T>A	p.Asp594Glu	p.D594E	ENST00000288602	NM_004333.4	594	gaT/gaA					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3786705	3786705	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014909-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	110	699	0	ENST00000262367.5:c.4506G>T	p.Trp1502Cys	p.W1502C	ENST00000262367	NM_004380.2	1502	tgG/tgT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010424-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	17	442	2	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013840-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	486	608	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3	222	782	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			11	408	789	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030459	49030459	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			14	125	479	0	ENST00000267163.4:c.1935del	p.Ser646LeufsTer12	p.S646Lfs*12	ENST00000267163	NM_000321.2	645	aCc/ac					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5214618	5214618	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	253	890	1	ENST00000357368.4:c.4448G>A	p.Arg1483Gln	p.R1483Q	ENST00000357368	NM_002850.3	1483	cGg/cAg					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10252792	10252792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			917	233	604	2	ENST00000340748.4:c.3173G>A	p.Gly1058Asp	p.G1058D	ENST00000340748		1058	gGc/gAc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643933	52643933	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			3	157	415	0	ENST00000394830.3:c.1963A>G	p.Met655Val	p.M655V	ENST00000394830	NM_018313.4	655	Atg/Gtg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21994216	21994216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	526	573	0	ENST00000361570.3:c.238G>T	p.Ala80Ser	p.A80S	ENST00000361570	NM_058195.3	80	Gcg/Tcg					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21994216	21994216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014880-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	526	573	0	ENST00000361570.3:c.238G>T	p.Ala80Ser	p.A80S	ENST00000361570	NM_058195.3	80	Gcg/Tcg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0014259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	496	816	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717615	89717615	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	46	335	0	ENST00000371953.3:c.640C>T	p.Gln214Ter	p.Q214*	ENST00000371953	NM_000314.4	214	Cag/Tag					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198274500	198274500	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	70	405	0	ENST00000335508.6:c.898G>C	p.Glu300Gln	p.E300Q	ENST00000335508	NM_012433.2	300	Gag/Cag					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119666144	119666144	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014259-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			435	216	421	1	ENST00000316626.5:c.337C>T	p.Arg113Cys	p.R113C	ENST00000316626		113	Cgt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112179431	112179431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	196	630	1	ENST00000257430.4:c.8140C>T	p.Arg2714Cys	p.R2714C	ENST00000257430	NM_000038.5	2714	Cgt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	453	424	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175271	112175272	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	217	323	2	ENST00000257430.4:c.3982_3983del	p.Gln1328AlafsTer3	p.Q1328Afs*3	ENST00000257430	NM_000038.5	1327	tCA/t					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398285	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0012000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	42	239	0	ENST00000256078.4:c.34_35delinsTT	p.Gly12Phe	p.G12F	ENST00000256078	NM_033360.2	12	GGt/TTt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108142099	108142099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	146	238	2	ENST00000278616.4:c.3043C>T	p.Gln1015Ter	p.Q1015*	ENST00000278616	NM_000051.3	1015	Caa/Taa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66218804	66218804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1065	450	328	1	ENST00000273854.3:c.2254G>T	p.Val752Leu	p.V752L	ENST00000273854	NM_004439.5	752	Gtg/Ttg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420844	49420844	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	45	330	0	ENST00000301067.7:c.14905G>A	p.Glu4969Lys	p.E4969K	ENST00000301067	NM_003482.3	4969	Gaa/Aaa					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1325335	1325335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012000-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	68	286	0	ENST00000381566.1:c.340G>T	p.Val114Phe	p.V114F	ENST00000381566		114	Gtt/Ttt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	654	645	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	143	282	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94180406	94180406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	141	303	0	ENST00000323929.3:c.1762G>A	p.Gly588Arg	p.G588R	ENST00000323929	NM_005591.3	588	Gga/Aga					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94180411	94180411	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	150	317	3	ENST00000323929.3:c.1757C>A	p.Ser586Ter	p.S586*	ENST00000323929	NM_005591.3	586	tCg/tAg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16075259	16075259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	163	392	0	ENST00000268712.3:c.293C>T	p.Pro98Leu	p.P98L	ENST00000268712	NM_006311.3	98	cCa/cTa					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410451	63410451	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010505-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	175	559	1	ENST00000330258.3:c.2716C>A	p.Leu906Ile	p.L906I	ENST00000330258	NM_152424.3	906	Ctc/Atc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	215	442	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163606	32163606	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	89	289	1	ENST00000375023.3:c.5620G>A	p.Gly1874Arg	p.G1874R	ENST00000375023	NM_004557.3	1874	Gga/Aga					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36933506	36933506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	331	862	0	ENST00000361632.4:c.1781G>A	p.Ser594Asn	p.S594N	ENST00000361632		594	aGt/aAt					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67654718	67654718	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	175	508	0	ENST00000264010.4:c.1205C>T	p.Ser402Leu	p.S402L	ENST00000264010	NM_006565.3	402	tCa/tTa					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028663	12028663	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010068-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	214	545	0	ENST00000353533.5:c.866A>G	p.Asp289Gly	p.D289G	ENST00000353533	NM_003010.3	289	gAt/gGt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55272998	55272998	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	130	560	0	ENST00000275493.2:c.3321T>G	p.Asn1107Lys	p.N1107K	ENST00000275493	NM_005228.3	1107	aaT/aaG					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55141036	55141036	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010485-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	84	562	0	ENST00000257290.5:c.1682T>A	p.Val561Asp	p.V561D	ENST00000257290	NM_006206.4	561	gTc/gAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577515	7577515	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	138	754	0	ENST00000269305.4:c.766A>C	p.Thr256Pro	p.T256P	ENST00000269305	NM_001126112.2	256	Aca/Cca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014684-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	82	674	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716326	52716326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			782	555	489	0	ENST00000322088.6:c.770G>T	p.Trp257Leu	p.W257L	ENST00000322088	NM_014225.5	257	tGg/tTg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			580	385	557	0	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911590	32911590	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs141702094		P-0014790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	136	351	0	ENST00000380152.3:c.3098A>T	p.Asp1033Val	p.D1033V	ENST00000380152		1033	gAt/gTt					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73345977	73345977	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1194	284	425	0	ENST00000377767.4:c.1561C>G	p.Gln521Glu	p.Q521E	ENST00000377767	NM_014953.3	521	Caa/Gaa					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30322740	30322740	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014790-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1408	136	447	0	ENST00000322652.5:c.1753G>C	p.Asp585His	p.D585H	ENST00000322652	NM_015355.2	585	Gat/Cat					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			897	331	866	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207120	1207120	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			849	265	785	1	ENST00000326873.7:c.208G>T	p.Glu70Ter	p.E70*	ENST00000326873	NM_000455.4	70	Gag/Tag					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158510	26158510	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	85	472	0	ENST00000289316.2:c.113A>G	p.Tyr38Cys	p.Y38C	ENST00000289316	NM_138720.2	38	tAt/tGt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600329	10600329	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	205	564	0	ENST00000171111.5:c.1526G>T	p.Gly509Val	p.G509V	ENST00000171111	NM_203500.1	509	gGg/gTg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106593	27106593	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			624	176	619	0	ENST00000324856.7:c.6207delG	p.Gln2070SerfsTer65	p.Q2070Sfs*65	ENST00000324856	NM_006015.4	2068	tcG/tc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435541	110435541	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	205	563	0	ENST00000375856.3:c.2860C>A	p.Pro954Thr	p.P954T	ENST00000375856	NM_003749.2	954	Ccg/Acg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11169512	11169512	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	248	715	0	ENST00000344626.4:c.4582G>T	p.Asp1528Tyr	p.D1528Y	ENST00000344626	NM_003072.3	1528	Gac/Tac					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41727835	41727835	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	220	808	0	ENST00000301178.4:c.460A>T	p.Thr154Ser	p.T154S	ENST00000301178	NM_021913.4	154	Acc/Tcc					NEWRECORD																																																																									
DROSHA	0	MSKCC	GRCh37	5	31526841	31526841	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	303	929	0	ENST00000344624.3:c.199C>T	p.Pro67Ser	p.P67S	ENST00000344624		67	Cca/Tca					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729706	41729706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	131	410	0	ENST00000242208.4:c.823G>A	p.Gly275Ser	p.G275S	ENST00000242208	NM_002192.2	275	Ggt/Agt					NEWRECORD																																																																									
PREX2	0	MSKCC	GRCh37	8	69046480	69046555	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTCACTTTCAGTCACTTCTGTCACCAAACTTGGTAAGGAAATCACATGACTCCCACTGTCTGTGTCAACTGTAACC	TTCACTTTCAGTCACTTCTGTCACCAAACTTGGTAAGGAAATCACATGACTCCCACTGTCTGTGTCAACTGTAACC	-			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			925	117	499	0	ENST00000288368.4:c.3954_3984+45del		p.X1318_splice	ENST00000288368	NM_024870.2	1318						NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971200	21971200	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	164	381	0	ENST00000304494.5:c.158T>C	p.Met53Thr	p.M53T	ENST00000304494	NM_000077.4	53	aTg/aCg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971200	21971200	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	164	381	0	ENST00000304494.5:c.158T>C	p.Met53Thr	p.M53T	ENST00000304494	NM_000077.4	53	aTg/aCg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70344866	70344866	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	162	604	1	ENST00000374080.3:c.2096C>A	p.Pro699Gln	p.P699Q	ENST00000374080		699	cCa/cAa					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29449925	29449926	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0015083-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1051	139	920	0	ENST00000389048.3:c.2929_2930delinsA	p.Gly977ArgfsTer3	p.G977Rfs*3	ENST00000389048	NM_004304.4	977	GGg/Ag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	103	570	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0013824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	68	758	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0013824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	34	441	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21974727	21974744	+	inframe_deletion	In_Frame_Del	DEL	CCTCCAGCAGCGCCCGCA	CCTCCAGCAGCGCCCGCA	-			P-0013824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	34	441	0	ENST00000304494.5:c.83_100del	p.Val28_Glu33del	p.V28_E33del	ENST00000304494	NM_000077.4	28	gTGCGGGCGCTGCTGGAGGcg/gcg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120457964	120457964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013824-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	40	567	0	ENST00000256646.2:c.7381G>A	p.Glu2461Lys	p.E2461K	ENST00000256646	NM_024408.3	2461	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	533	684	0	ENST00000269305.4:c.832C>T	p.Pro278Ser	p.P278S	ENST00000269305	NM_001126112.2	278	Cct/Tct					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0014410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			228	118	335	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa					NEWRECORD																																																																									
SESN3	0	MSKCC	GRCh37	11	94924617	94924617	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	143	687	0	ENST00000536441.1:c.293G>C	p.Arg98Pro	p.R98P	ENST00000536441	NM_144665.3	98	cGc/cCc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118360847	118360847	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			236	154	252	0	ENST00000534358.1:c.4579T>G	p.Cys1527Gly	p.C1527G	ENST00000534358	NM_005933.3	1527	Tgt/Ggt					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37866106	37866106	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			298	141	525	2	ENST00000269571.5:c.615G>A	p.Trp205Ter	p.W205*	ENST00000269571		205	tgG/tgA					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178095572	178095572	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	54	302	0	ENST00000397062.3:c.1759A>G	p.Arg587Gly	p.R587G	ENST00000397062	NM_006164.4	587	Aga/Gga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177109	112177109	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			92	293	518	0	ENST00000257430.4:c.5818A>G	p.Ile1940Val	p.I1940V	ENST00000257430	NM_000038.5	1940	Ata/Gta					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100613377	100613377	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014410-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	304	527	0	ENST00000308731.7:c.1023G>T	p.Gln341His	p.Q341H	ENST00000308731	NM_000061.2	341	caG/caT					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206649609	206649609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	64	469	0	ENST00000367120.3:c.444G>T	p.Glu148Asp	p.E148D	ENST00000367120	NM_014002.3	148	gaG/gaT					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183619	10183619	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	46	476	2	ENST00000256474.2:c.88G>T	p.Gly30Trp	p.G30W	ENST00000256474	NM_000551.3	30	Ggg/Tgg					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143045854	143045854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	64	606	1	ENST00000262992.4:c.1780G>T	p.Val594Leu	p.V594L	ENST00000262992	NM_001101669.1	594	Gtg/Ttg					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149453057	149453057	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	35	420	0	ENST00000286301.3:c.890-1G>A		p.X297_splice	ENST00000286301	NM_005211.3	297						NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139409053	139409053	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	50	746	0	ENST00000277541.6:c.2116G>T	p.Glu706Ter	p.E706*	ENST00000277541	NM_017617.3	706	Gag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	66	499	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28959069	28959069	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	88	729	0	ENST00000282397.4:c.2069C>G	p.Pro690Arg	p.P690R	ENST00000282397	NM_002019.4	690	cCt/cGt					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65569036	65569036	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	115	618	0	ENST00000358664.4:c.22G>T	p.Glu8Ter	p.E8*	ENST00000358664	NM_002382.4	8	Gag/Tag					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56363597	56363597	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	25	235	1	ENST00000348428.3:c.377-1G>T		p.X126_splice	ENST00000348428	NM_006785.3	126						NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22221667	22221667	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	28	201	1	ENST00000215832.6:c.64G>T	p.Gly22Trp	p.G22W	ENST00000215832	NM_002745.4	22	Ggg/Tgg					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0013490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	18	405	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2880	698	518	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0010566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	2570	398	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	292	646	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15354097	15354097	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010566-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	127	207	0	ENST00000263377.2:c.2783T>C	p.Met928Thr	p.M928T	ENST00000263377	NM_058243.2	928	aTg/aCg					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	149	572	1	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	129	578	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			426	116	447	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	176	741	0	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	77	505	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17742931	17742931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	39	362	1	ENST00000250003.3:c.839C>T	p.Pro280Leu	p.P280L	ENST00000250003	NM_002478.4	280	cCg/cTg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175277	112175284	+	frameshift_variant	Frame_Shift_Del	DEL	ACCCTAGA	ACCCTAGA	-			P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	51	447	0	ENST00000257430.4:c.3989_3996delCTAGAACC	p.Pro1330GlnfsTer9	p.P1330Qfs*9	ENST00000257430	NM_000038.5	1329	cACCCTAGA/c					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508682	106508682	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013963-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	59	467	0	ENST00000359195.3:c.676C>T	p.Arg226Cys	p.R226C	ENST00000359195	NM_002649.2	226	Cgc/Tgc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0011161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	598	357	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	338	510	0	ENST00000269305.4:c.824G>C	p.Cys275Ser	p.C275S	ENST00000269305	NM_001126112.2	275	tGt/tCt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0012711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1588	56	974	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	171	499	0	ENST00000349496.5:c.94G>C	p.Asp32His	p.D32H	ENST00000349496	NM_001904.3	32	Gac/Cac					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89712015	89712015	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0012711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	43	165	0	ENST00000371953.3:c.633C>A	p.Cys211Ter	p.C211*	ENST00000371953	NM_000314.4	211	tgC/tgA					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32185852	32185852	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	131	587	0	ENST00000375023.3:c.1544A>G	p.Asn515Ser	p.N515S	ENST00000375023	NM_004557.3	515	aAc/aGc					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128845589	128845589	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	131	476	1	ENST00000249373.3:c.886C>T	p.Arg296Cys	p.R296C	ENST00000249373	NM_005631.4	296	Cgt/Tgt					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18793382	18793382	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs77070108		P-0012711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	172	485	1	ENST00000266497.5:c.4079C>T	p.Ala1360Val	p.A1360V	ENST00000266497		1360	gCg/gTg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2125894	2125894	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0012711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	83	668	0	ENST00000219476.3:c.2639+1G>A		p.X880_splice	ENST00000219476	NM_000548.3	880						NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061151	38061222	+	inframe_deletion	In_Frame_Del	DEL	TCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAGTAGCAGCCGT	TCCCGCCCCCGCCGCCGGCCCCCGGCTGCTTCTCGCACTTGAAGCGCTTCTGGCGGCGCAAGTAGCAGCCGT	-			P-0012711-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	93	167	0	ENST00000250448.2:c.767_838del	p.Asn256_Gly279del	p.N256_G279del	ENST00000250448	NM_004496.3	256	aACGGCTGCTACTTGCGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAgc/agc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	229	299	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67654607	67654607	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	408	627	0	ENST00000264010.4:c.1094A>G	p.Lys365Arg	p.K365R	ENST00000264010	NM_006565.3	365	aAa/aGa					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38506105	38506105	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	272	608	0	ENST00000254066.5:c.397A>G	p.Asn133Asp	p.N133D	ENST00000254066	NM_000964.3	133	Aac/Gac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	538	558	2	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156830856	156830856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			941	132	517	2	ENST00000524377.1:c.130G>A	p.Gly44Ser	p.G44S	ENST00000524377	NM_002529.3	44	Ggc/Agc					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38966811	38966811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	90	335	0	ENST00000357387.3:c.1231G>A	p.Val411Met	p.V411M	ENST00000357387	NM_152756.3	411	Gtg/Atg					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131973869	131973869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015050-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			374	123	400	0	ENST00000265335.6:c.3572G>A	p.Gly1191Glu	p.G1191E	ENST00000265335		1191	gGa/gAa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0012274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	315	634	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191532	10191532	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	127	434	0	ENST00000256474.2:c.525C>A	p.Tyr175Ter	p.Y175*	ENST00000256474	NM_000551.3	175	taC/taA					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48027076	48027076	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	292	458	1	ENST00000234420.5:c.1954G>T	p.Gly652Trp	p.G652W	ENST00000234420	NM_000179.2	652	Ggg/Tgg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47058654	47058654	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	157	604	0	ENST00000409792.3:c.7624G>T	p.Glu2542Ter	p.E2542*	ENST00000409792	NM_014159.6	2542	Gag/Tag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151859410	151859410	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	120	540	1	ENST00000262189.6:c.11252G>T	p.Cys3751Phe	p.C3751F	ENST00000262189	NM_170606.2	3751	tGt/tTt					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23634443	23634443	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	231	510	0	ENST00000261584.4:c.2843T>G	p.Phe948Cys	p.F948C	ENST00000261584	NM_024675.3	948	tTt/tGt					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37866607	37866607	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	144	536	0	ENST00000269571.5:c.774C>A	p.Phe258Leu	p.F258L	ENST00000269571		258	ttC/ttA					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651549	52651549	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012274-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			143	91	458	0	ENST00000394830.3:c.1547del	p.Lys516ArgfsTer3	p.K516Rfs*3	ENST00000394830	NM_018313.4	516	aAg/ag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			860	69	441	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	169	533	1	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914871	32914871	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	51	456	0	ENST00000380152.3:c.6379A>T	p.Ser2127Cys	p.S2127C	ENST00000380152		2127	Agt/Tgt					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89346721	89346721	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	27	397	0	ENST00000301030.4:c.6229C>A	p.Leu2077Met	p.L2077M	ENST00000301030	NM_001256183.1	2077	Ctg/Atg					NEWRECORD																																																																									
TAP2	0	MSKCC	GRCh37	6	32798066	32798066	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014509-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1105	90	646	0	ENST00000374899.4:c.1613A>C	p.Glu538Ala	p.E538A	ENST00000374899	NM_018833.2	538	gAa/gCa					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	119	387	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442059	52442059	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013482-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	187	552	0	ENST00000460680.1:c.290T>A	p.Leu97Gln	p.L97Q	ENST00000460680	NM_004656.3	97	cTg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	340	451	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152201881	152201881	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	122	407	0	ENST00000206249.3:c.735C>A	p.Cys245Ter	p.C245*	ENST00000206249	NM_000125.3	245	tgC/tgA					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	324	505	0	ENST00000171111.5:c.1264G>C	p.Asp422His	p.D422H	ENST00000171111	NM_203500.1	422	Gat/Cat					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434936	49434936	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010024-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	190	258	0	ENST00000301067.7:c.6617del	p.Pro2206LeufsTer58	p.P2206Lfs*58	ENST00000301067	NM_003482.3	2206	cCt/ct					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120462873	120462873	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	207	426	0	ENST00000256646.2:c.5458G>C	p.Asp1820His	p.D1820H	ENST00000256646	NM_024408.3	1820	Gat/Cat					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49935045	49935045	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	188	897	0	ENST00000296474.3:c.1954C>A	p.Pro652Thr	p.P652T	ENST00000296474	NM_002447.2	652	Cct/Act					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176687097	176687097	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	229	704	0	ENST00000439151.2:c.5074C>G	p.His1692Asp	p.H1692D	ENST00000439151	NM_022455.4	1692	Cac/Gac					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38315007	38315007	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	265	625	1	ENST00000425967.3:c.57G>T	p.Trp19Cys	p.W19C	ENST00000425967	NM_001174067.1	19	tgG/tgT					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93650066	93650066	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	108	652	0	ENST00000375746.1:c.1617C>G	p.Tyr539Ter	p.Y539*	ENST00000375746	NM_001174167.1	539	taC/taG					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64138112	64138112	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	157	381	0	ENST00000334205.4:c.2035G>C	p.Ala679Pro	p.A679P	ENST00000334205	NM_003942.2	679	Gcg/Ccg					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21549449	21549449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	73	195	0	ENST00000382592.4:c.2827G>C	p.Glu943Gln	p.E943Q	ENST00000382592	NM_014572.2	943	Gag/Cag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916281	9916281	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0010174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	497	444	0	ENST00000330684.3:c.2008T>A	p.Phe670Ile	p.F670I	ENST00000330684	NM_001134407.1	670	Ttt/Att					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579327	7579327	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	289	451	0	ENST00000269305.4:c.360G>T	p.Lys120Asn	p.K120N	ENST00000269305	NM_001126112.2	120	aaG/aaT					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30322626	30322626	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	117	630	0	ENST00000322652.5:c.1639G>C	p.Glu547Gln	p.E547Q	ENST00000322652	NM_015355.2	547	Gaa/Caa					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15292538	15292538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	271	660	0	ENST00000263388.2:c.2641G>A	p.Gly881Ser	p.G881S	ENST00000263388	NM_000435.2	881	Ggc/Agc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139438539	139438542	+	frameshift_variant	Frame_Shift_Del	DEL	TGGG	TGGG	-			P-0010174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	182	587	0	ENST00000277541.6:c.74_77del	p.Ser25CysfsTer7	p.S25Cfs*7	ENST00000277541	NM_017617.3	25	tCCCAg/tg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	210	562	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577515	7577517	+	inframe_deletion	In_Frame_Del	DEL	TGA	TGA	-	rs1064794309		P-0013317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	114	645	0	ENST00000269305.4:c.764_766del	p.Ile255del	p.I255del	ENST00000269305	NM_001126112.2	255	aTCAca/aca					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106482	27106482	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			331	112	669	0	ENST00000324856.7:c.6093T>G	p.Tyr2031Ter	p.Y2031*	ENST00000324856	NM_006015.4	2031	taT/taG					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56440713	56440713	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	135	795	2	ENST00000407977.2:c.505G>T	p.Ala169Ser	p.A169S	ENST00000407977		169	Gct/Tct					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	109	550	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	132	813	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544742	65544742	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014267-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	116	520	0	ENST00000358664.4:c.184del	p.Gln62LysfsTer3	p.Q62Kfs*3	ENST00000358664	NM_002382.4	62	Caa/aa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183785	10183785	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	67	424	0	ENST00000256474.2:c.254T>C	p.Leu85Pro	p.L85P	ENST00000256474	NM_000551.3	85	cTg/cCg					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66781598	66781598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	33	760	0	ENST00000307102.5:c.1006G>T	p.Asp336Tyr	p.D336Y	ENST00000307102	NM_002755.3	336	Gat/Tat					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7117150	7117150	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	65	873	2	ENST00000302850.5:c.4066G>T	p.Glu1356Ter	p.E1356*	ENST00000302850	NM_000208.2	1356	Gag/Tag					NEWRECORD																																																																									
BBC3	0	MSKCC	GRCh37	19	47729876	47729876	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	133	875	0	ENST00000449228.1:c.513T>A	p.Asp171Glu	p.D171E	ENST00000449228	NM_001127240.2	171	gaT/gaA					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3900381	3900384	+	frameshift_variant	Frame_Shift_Del	DEL	GCAC	GCAC	-			P-0012853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	25	736	0	ENST00000262367.5:c.712_715del	p.Val238TrpfsTer5	p.V238Wfs*5	ENST00000262367	NM_004380.2	238	GTGCtg/tg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52598101	52598102	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0012853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	101	793	0	ENST00000394830.3:c.3764_3765del	p.Ser1255CysfsTer2	p.S1255Cfs*2	ENST00000394830	NM_018313.4	1255	tCT/t					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442486	52442494	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGACCTGGT	AGACCTGGT	-			P-0012853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	91	377	0	ENST00000460680.1:c.251_255+4del		p.X84_splice	ENST00000460680	NM_004656.3	84						NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			249	33	444	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183694	10183694	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013574-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	41	472	0	ENST00000256474.2:c.163G>T	p.Glu55Ter	p.E55*	ENST00000256474	NM_000551.3	55	Gag/Tag					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	477	322	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578431	7578431	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	243	385	0	ENST00000269305.4:c.499C>T	p.Gln167Ter	p.Q167*	ENST00000269305	NM_001126112.2	167	Cag/Tag					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	1008	392	0	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	242	183	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602314	10602314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	57	368	0	ENST00000171111.5:c.1264G>A	p.Asp422Asn	p.D422N	ENST00000171111	NM_203500.1	422	Gat/Aat					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61726917	61726917	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0011561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	423	408	0	ENST00000401558.2:c.521T>A	p.Leu174Ter	p.L174*	ENST00000401558	NM_003400.3	174	tTg/tAg					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49928029	49928029	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1343	71	564	0	ENST00000296474.3:c.3699C>G	p.Ile1233Met	p.I1233M	ENST00000296474	NM_002447.2	1233	atC/atG					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176637676	176637676	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0011561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	327	258	0	ENST00000439151.2:c.2276C>G	p.Ser759Ter	p.S759*	ENST00000439151	NM_022455.4	759	tCa/tGa					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32417920	32417920	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	48	290	0	ENST00000332351.3:c.1132C>G	p.Leu378Val	p.L378V	ENST00000332351	NM_024426.4	378	Ctt/Gtt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5246048	5246048	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	26	194	0	ENST00000357368.4:c.727G>A	p.Val243Met	p.V243M	ENST00000357368	NM_002850.3	243	Gtg/Atg					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41744494	41744494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011561-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	507	530	0	ENST00000301178.4:c.1114C>G	p.Gln372Glu	p.Q372E	ENST00000301178	NM_021913.4	372	Caa/Gaa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0014471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	234	509	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
HIST3H3	0	MSKCC	GRCh37	1	228612767	228612767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	59	397	0	ENST00000366696.1:c.260G>A	p.Ser87Asn	p.S87N	ENST00000366696	NM_003493.2	87	aGc/aAc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29550542	29550542	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	43	368	0	ENST00000358273.4:c.1804del	p.Glu602LysfsTer3	p.E602Kfs*3	ENST00000358273	NM_001042492.2	601	cGg/cg					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40370292	40370292	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			870	79	592	1	ENST00000293328.3:c.1046C>T	p.Ala349Val	p.A349V	ENST00000293328	NM_012448.3	349	gCa/gTa					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242793306	242793306	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			817	57	676	0	ENST00000334409.5:c.771G>T	p.Met257Ile	p.M257I	ENST00000334409	NM_005018.2	257	atG/atT					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53222764	53222764	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014471-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	32	297	0	ENST00000375401.3:c.4172T>G	p.Leu1391Arg	p.L1391R	ENST00000375401	NM_004187.3	1391	cTg/cGg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0013200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	222	604	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56168516	56168516	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013200-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	96	259	0	ENST00000399503.3:c.1472G>A	p.Cys491Tyr	p.C491Y	ENST00000399503	NM_005921.1	491	tGt/tAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010869-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	15	388	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	307	453	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202151270	202151270	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	284	897	0	ENST00000358485.4:c.1570C>T	p.Gln524Ter	p.Q524*	ENST00000358485	NM_001080125.1	524	Cag/Tag					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245965	46245965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	275	588	0	ENST00000334344.6:c.4059G>C	p.Leu1353Phe	p.L1353F	ENST00000334344	NM_152641.2	1353	ttG/ttC					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056259	26056259	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	367	645	0	ENST00000343677.2:c.398G>C	p.Gly133Ala	p.G133A	ENST00000343677	NM_005319.3	133	gGg/gCg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187518126	187518126	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	583	864	1	ENST00000441802.2:c.12568G>T	p.Ala4190Ser	p.A4190S	ENST00000441802	NM_005245.3	4190	Gca/Tca					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104309813	104309813	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	238	607	0	ENST00000369902.3:c.404C>T	p.Thr135Ile	p.T135I	ENST00000369902	NM_016169.3	135	aCa/aTa					NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22127167	22127167	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	199	742	0	ENST00000215832.6:c.961G>A	p.Asp321Asn	p.D321N	ENST00000215832	NM_002745.4	321	Gac/Aac					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135772089	135772092	+	missense_variant	Missense_Mutation	ONP	CTTC	CTTC	TTTT			P-0013278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	22	206	0	ENST00000298552.3:c.3025_3028delinsAAAA	p.Glu1009_Glu1010delinsLysLys	p.E1009_E1010delinsKK	ENST00000298552	NM_001162426.1	1009	GAAGag/AAAAag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	40	375	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55146613	55146613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	58	511	0	ENST00000257290.5:c.2287G>T	p.Asp763Tyr	p.D763Y	ENST00000257290	NM_006206.4	763	Gat/Tat					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149514337	149514337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	88	617	0	ENST00000261799.4:c.607G>T	p.Ala203Ser	p.A203S	ENST00000261799	NM_002609.3	203	Gcc/Tcc					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149514342	149514342	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1137	91	634	1	ENST00000261799.4:c.602C>A	p.Ser201Tyr	p.S201Y	ENST00000261799	NM_002609.3	201	tCt/tAt					NEWRECORD																																																																									
HIST1H3E	0	MSKCC	GRCh37	6	26225408	26225408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1656	125	833	0	ENST00000360408.1:c.26G>A	p.Arg9His	p.R9H	ENST00000360408	NM_003532.2	9	cGt/cAt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108206590	108206590	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010611-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	83	470	0	ENST00000278616.4:c.8170C>A	p.Gln2724Lys	p.Q2724K	ENST00000278616	NM_000051.3	2724	Caa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	39	478	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0010522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	48	512	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46123826	46123826	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010522-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	36	251	0	ENST00000334344.6:c.93-1G>A		p.X31_splice	ENST00000334344	NM_152641.2	31						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	415	707	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
HIST1H3A	0	MSKCC	GRCh37	6	26021090	26021090	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs199573090		P-0012985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3354	525	1375	1	ENST00000357647.3:c.373A>T	p.Ile125Phe	p.I125F	ENST00000357647	NM_003529.2	125	Atc/Ttc					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865125	57865125	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1111	357	1217	8	ENST00000228682.2:c.2602C>T	p.Pro868Ser	p.P868S	ENST00000228682	NM_005269.2	868	Cca/Tca					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589656	67589679	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCCCAGGTGAGTTTTCTATGAAA	ATCCCAGGTGAGTTTTCTATGAAA	-			P-0012985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	62	234	0	ENST00000274335.5:c.1422_1425+20del		p.X474_splice	ENST00000274335		474						NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81359014	81359014	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	122	811	1	ENST00000222390.5:c.947C>A	p.Thr316Asn	p.T316N	ENST00000222390	NM_000601.4	316	aCt/aAt					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110249411	110249411	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	212	1115	0	ENST00000374672.4:c.1162T>A	p.Trp388Arg	p.W388R	ENST00000374672	NM_004235.4	388	Tgg/Agg					NEWRECORD																																																																									
FGF19	0	MSKCC	GRCh37	11	69518463	69518463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	31	248	0	ENST00000294312.3:c.182G>T	p.Arg61Leu	p.R61L	ENST00000294312	NM_005117.2	61	cGc/cTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	118	497	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858273	9858273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	99	700	0	ENST00000330684.3:c.3128C>T	p.Thr1043Ile	p.T1043I	ENST00000330684	NM_001134407.1	1043	aCc/aTc					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435023	56435023	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	96	522	0	ENST00000407977.2:c.2114G>T	p.Gly705Val	p.G705V	ENST00000407977		705	gGc/gTc					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546539	9546539	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0012879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	178	504	0	ENST00000353224.5:c.1482+1G>T		p.X494_splice	ENST00000353224	NM_177990.2	494						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	96	559	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243828084	243828084	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	90	588	0	ENST00000263826.5:c.274C>A	p.Pro92Thr	p.P92T	ENST00000263826	NM_005465.4	92	Cca/Aca					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29498343	29498343	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	49	624	1	ENST00000389048.3:c.1837G>T	p.Ala613Ser	p.A613S	ENST00000389048	NM_004304.4	613	Gca/Tca					NEWRECORD																																																																									
BCL2L11	0	MSKCC	GRCh37	2	111881507	111881507	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	91	616	0	ENST00000393256.3:c.185G>T	p.Gly62Val	p.G62V	ENST00000393256	NM_006538.4	62	gGc/gTc					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128200762	128200762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	89	646	0	ENST00000341105.2:c.1043G>C	p.Cys348Ser	p.C348S	ENST00000341105	NM_032638.4	348	tGt/tCt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55946296	55946296	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	76	512	0	ENST00000263923.4:c.3883G>T	p.Ala1295Ser	p.A1295S	ENST00000263923	NM_002253.2	1295	Gca/Tca					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106520095	106520095	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	48	413	0	ENST00000359195.3:c.2523C>A	p.Asp841Glu	p.D841E	ENST00000359195	NM_002649.2	841	gaC/gaA					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116411691	116411691	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	83	556	0	ENST00000397752.3:c.2870A>C	p.Lys957Thr	p.K957T	ENST00000397752	NM_000245.2	957	aAg/aCg					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39935765	39935765	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1250	128	941	1	ENST00000378444.4:c.107G>T	p.Gly36Val	p.G36V	ENST00000378444	NM_001123385.1	36	gGt/gTt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140534601	140534601	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	87	630	0	ENST00000288602.6:c.312del	p.Asn105ThrfsTer77	p.N105Tfs*77	ENST00000288602	NM_004333.4	104	ggG/gg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039857	47039860	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	89	715	0	ENST00000329236.7:c.966_969del	p.Ser323TrpfsTer83	p.S323Wfs*83	ENST00000329236	NM_001204466.1	322	gcCTCT/gc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11097092	11097092	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013376-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	111	709	0	ENST00000344626.4:c.586del	p.Leu196SerfsTer107	p.L196Sfs*107	ENST00000344626	NM_003072.3	195	Ccc/cc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	434	501	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49928628	49928628	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	439	558	0	ENST00000296474.3:c.3644+2T>C		p.X1215_splice	ENST00000296474	NM_002447.2	1215						NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670754	134670754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	125	336	0	ENST00000398015.3:c.665G>A	p.Arg222Gln	p.R222Q	ENST00000398015	NM_004441.4	222	cGg/cAg					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143159063	143159063	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	192	461	0	ENST00000262992.4:c.790A>T	p.Ile264Phe	p.I264F	ENST00000262992	NM_001101669.1	264	Att/Ttt					NEWRECORD																																																																									
CDK6	0	MSKCC	GRCh37	7	92355058	92355058	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	198	385	0	ENST00000265734.4:c.419G>T	p.Arg140Leu	p.R140L	ENST00000265734	NM_001259.6	140	cGa/cTa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133201350	133201350	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1296	161	614	0	ENST00000320574.5:c.6794A>G	p.Tyr2265Cys	p.Y2265C	ENST00000320574	NM_006231.2	2265	tAc/tGc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31383274	31383274	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138171867		P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1597	864	669	0	ENST00000328111.2:c.1186C>T	p.Pro396Ser	p.P396S	ENST00000328111	NM_006892.3	396	Ccc/Tcc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221987	1221987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012593-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	452	595	0	ENST00000326873.7:c.903del	p.Gln302ArgfsTer34	p.Q302Rfs*34	ENST00000326873	NM_000455.4	301	cGg/cg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	19	162	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67588144	67588145	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0011307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	100	282	0	ENST00000274335.5:c.976_977del	p.Met326ValfsTer6	p.M326Vfs*6	ENST00000274335		325	aAT/a					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643786	52643786	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	183	355	0	ENST00000394830.3:c.2110del	p.Met704TrpfsTer10	p.M704Wfs*10	ENST00000394830	NM_018313.4	704	Atg/tg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162795	47162805	+	frameshift_variant	Frame_Shift_Del	DEL	GTCTCCTTGAC	GTCTCCTTGAC	-			P-0011307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	103	278	0	ENST00000409792.3:c.3321_3331del	p.Ser1108PhefsTer3	p.S1108Ffs*3	ENST00000409792	NM_014159.6	1107	gaGTCAAGGAGACat/gaat					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191546	10191553	+	frameshift_variant	Frame_Shift_Del	DEL	TCGTCAGG	TCGTCAGG	-			P-0011307-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	190	307	0	ENST00000256474.2:c.542_549del	p.Val181AlafsTer72	p.V181Afs*72	ENST00000256474	NM_000551.3	180	aTCGTCAGG/a					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			337	412	397	0	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578177	7578177	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			501	405	559	0	ENST00000269305.4:c.672G>T	p.Glu224Asp	p.E224D	ENST00000269305	NM_001126112.2	224	gaG/gaT					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023412	27023412	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			640	149	434	0	ENST00000324856.7:c.518A>G	p.His173Arg	p.H173R	ENST00000324856	NM_006015.4	173	cAt/cGt					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225346654	225346654	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			789	147	422	0	ENST00000264414.4:c.1984A>T	p.Asn662Tyr	p.N662Y	ENST00000264414	NM_003590.4	662	Aat/Tat					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851589	134851589	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			525	117	378	0	ENST00000398015.3:c.995T>A	p.Ile332Asn	p.I332N	ENST00000398015	NM_004441.4	332	aTc/aAc					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131972827	131972827	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			442	101	320	0	ENST00000265335.6:c.3410G>T	p.Ser1137Ile	p.S1137I	ENST00000265335		1137	aGt/aTt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152129120	152129120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			766	435	605	0	ENST00000206249.3:c.73C>A	p.Pro25Thr	p.P25T	ENST00000206249	NM_000125.3	25	Ccc/Acc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509516	106509516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1280	118	357	0	ENST00000359195.3:c.1510T>C	p.Ser504Pro	p.S504P	ENST00000359195	NM_002649.2	504	Tct/Cct					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	98011476	98011476	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			837	265	479	2	ENST00000289081.3:c.98A>T	p.Asp33Val	p.D33V	ENST00000289081	NM_000136.2	33	gAc/gTc					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102100590	102100590	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			685	136	394	1	ENST00000282441.5:c.1434G>T	p.Leu478Phe	p.L478F	ENST00000282441	NM_001130145.2	478	ttG/ttT					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118375583	118375583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			575	88	326	0	ENST00000534358.1:c.8976G>A	p.Met2992Ile	p.M2992I	ENST00000534358	NM_005933.3	2992	atG/atA					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57864739	57864739	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			567	1789	806	1	ENST00000228682.2:c.2216C>A	p.Ala739Glu	p.A739E	ENST00000228682	NM_005269.2	739	gCa/gAa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133257200	133257200	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			629	149	482	1	ENST00000320574.5:c.278G>A	p.Arg93Lys	p.R93K	ENST00000320574	NM_006231.2	93	aGa/aAa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678550	88678550	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			299	89	303	0	ENST00000360948.2:c.986C>T	p.Pro329Leu	p.P329L	ENST00000360948	NM_001012338.2	329	cCc/cTc					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45656765	45656765	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			281	84	301	1	ENST00000407780.3:c.391A>T	p.Thr131Ser	p.T131S	ENST00000407780	NM_001283052.1	131	Aca/Tca					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118343517	118343517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			720	116	321	0	ENST00000534358.1:c.1643C>T	p.Thr548Ile	p.T548I	ENST00000534358	NM_005933.3	548	aCt/aTt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100912788	100912788	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1216	215	721	1	ENST00000325455.5:c.2534G>T	p.Arg845Met	p.R845M	ENST00000325455	NM_001202474.3	845	aGg/aTg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29552261	29552261	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145891889		P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			492	126	387	0	ENST00000358273.4:c.1994C>T	p.Ser665Phe	p.S665F	ENST00000358273	NM_001042492.2	665	tCc/tTc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356138	66356150	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTGGGCTCAAG	TCCTGGGCTCAAG	-			P-0007493-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			836	54	368	0	ENST00000273854.3:c.1347_1359del	p.Asp449GlufsTer8	p.D449Efs*8	ENST00000273854	NM_004439.5	449	gaCTTGAGCCCAGGA/ga					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50468071	50468071	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	282	264	0	ENST00000331340.3:c.1306G>A	p.Asp436Asn	p.D436N	ENST00000331340	NM_006060.4	436	Gac/Aac					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87322773	87322773	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	359	272	0	ENST00000277120.3:c.374A>G	p.Asn125Ser	p.N125S	ENST00000277120		125	aAc/aGc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2135301	2135301	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			140	516	368	0	ENST00000219476.3:c.4640T>A	p.Val1547Asp	p.V1547D	ENST00000219476	NM_000548.3	1547	gTc/gAc					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66511686	66511708	+	frameshift_variant	Frame_Shift_Del	DEL	TCCTCAGGGAATACTTTGAGAGG	TCCTCAGGGAATACTTTGAGAGG	-			P-0011405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	186	269	0	ENST00000358598.2:c.147_169del	p.Leu50GlyfsTer24	p.L50Gfs*24	ENST00000358598	NM_212471.2	49	tTCCTCAGGGAATACTTTGAGAGG/t					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014365-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			758	16	550	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577506	7577506	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	108	352	0	ENST00000269305.4:c.775G>T	p.Asp259Tyr	p.D259Y	ENST00000269305	NM_001126112.2	259	Gac/Tac					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11190744	11190744	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	153	366	0	ENST00000361445.4:c.5455C>G	p.His1819Asp	p.H1819D	ENST00000361445	NM_004958.3	1819	Cat/Gat					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190728761	190728761	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	62	171	0	ENST00000441310.2:c.2149G>C	p.Asp717His	p.D717H	ENST00000441310	NM_000534.4	717	Gac/Cac					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113254	209113254	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	161	411	0	ENST00000345146.2:c.253G>C	p.Glu85Gln	p.E85Q	ENST00000345146	NM_005896.2	85	Gag/Cag					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430987	181430987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	27	350	0	ENST00000325404.1:c.839G>T	p.Gly280Val	p.G280V	ENST00000325404	NM_003106.3	280	gGc/gTc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5210691	5210691	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	196	331	0	ENST00000357368.4:c.5360G>A	p.Arg1787Gln	p.R1787Q	ENST00000357368	NM_002850.3	1787	cGg/cAg					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426522	47426522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011589-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	265	479	0	ENST00000377045.4:c.865A>G	p.Lys289Glu	p.K289E	ENST00000377045	NM_001654.4	289	Aag/Gag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0011039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	289	301	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	282	346	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	367	390	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876098	35876098	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			763	195	383	0	ENST00000303115.3:c.890G>C	p.Ser297Thr	p.S297T	ENST00000303115	NM_002185.3	297	aGt/aCt					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56189377	56189377	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	88	399	0	ENST00000399503.3:c.4409C>T	p.Ala1470Val	p.A1470V	ENST00000399503	NM_005921.1	1470	gCt/gTt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175752	112175761	+	frameshift_variant	Frame_Shift_Del	DEL	TTTATTACAT	TTTATTACAT	-			P-0011039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	189	296	0	ENST00000257430.4:c.4464_4473del	p.Leu1489ProfsTer15	p.L1489Pfs*15	ENST00000257430	NM_000038.5	1487	acTTTATTACAT/ac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			375	485	596	0	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164509	36164509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			465	103	351	1	ENST00000300305.3:c.1366G>A	p.Glu456Lys	p.E456K	ENST00000300305		456	Gag/Aag					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45795060	45795060	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			282	347	460	0	ENST00000372115.3:c.1526G>A	p.Arg509His	p.R509H	ENST00000372115	NM_001048171.1	509	cGc/cAc					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551696	150551696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			126	208	248	0	ENST00000369026.2:c.311G>T	p.Arg104Leu	p.R104L	ENST00000369026	NM_021960.4	104	cGc/cTc					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	244006428	244006428	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			665	257	464	0	ENST00000263826.5:c.45G>T	p.Arg15Ser	p.R15S	ENST00000263826	NM_005465.4	15	agG/agT					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49415825	49415825	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			299	65	219	0	ENST00000301067.7:c.16521+1G>A		p.X5507_splice	ENST00000301067	NM_003482.3	5507						NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098431	11098431	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			201	299	429	0	ENST00000344626.4:c.949delG	p.Ala317ProfsTer9	p.A317Pfs*9	ENST00000344626	NM_003072.3	317	Gcc/cc					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25464463	25464463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			218	408	398	0	ENST00000264709.3:c.2050G>T	p.Val684Phe	p.V684F	ENST00000264709	NM_175629.2	684	Gtc/Ttc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40980777	40980777	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			454	358	458	0	ENST00000373198.4:c.1709C>A	p.Thr570Lys	p.T570K	ENST00000373198	NM_133170.3	570	aCa/aAa					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55984803	55984803	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			843	260	430	0	ENST00000263923.4:c.326A>T	p.Asp109Val	p.D109V	ENST00000263923	NM_002253.2	109	gAc/gTc					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1254576	1254576	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			662	160	482	0	ENST00000310581.5:c.3202G>C	p.Glu1068Gln	p.E1068Q	ENST00000310581	NM_198253.2	1068	Gag/Cag					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35873702	35873702	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			640	173	304	0	ENST00000303115.3:c.658T>C	p.Trp220Arg	p.W220R	ENST00000303115	NM_002185.3	220	Tgg/Cgg					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149495462	149495462	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			411	280	681	0	ENST00000261799.4:c.3185G>T	p.Ser1062Ile	p.S1062I	ENST00000261799	NM_002609.3	1062	aGc/aTc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117715866	117715866	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			365	179	334	0	ENST00000368508.3:c.892A>G	p.Lys298Glu	p.K298E	ENST00000368508	NM_002944.2	298	Aaa/Gaa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157469986	157469986	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			308	160	349	1	ENST00000346085.5:c.2780G>T	p.Gly927Val	p.G927V	ENST00000346085	NM_020732.3	927	gGa/gTa					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13971366	13971366	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014422-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			206	228	297	0	ENST00000405192.2:c.563G>T	p.Arg188Leu	p.R188L	ENST00000405192	NM_001163147.1	188	cGc/cTc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	33	430	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0014150-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	28	392	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	518	301	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
CD274	0	MSKCC	GRCh37	9	5462893	5462893	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	118	281	0	ENST00000381577.3:c.454G>T	p.Glu152Ter	p.E152*	ENST00000381577	NM_014143.3	152	Gaa/Taa					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729154	66729154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	382	434	0	ENST00000307102.5:c.362G>C	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	121	tGc/tCc					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176519461	176519461	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	212	575	0	ENST00000292408.4:c.867C>G	p.Ile289Met	p.I289M	ENST00000292408	NM_213647.1	289	atC/atG					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93965545	93965545	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0012780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	189	425	0	ENST00000369303.4:c.2382+1G>A		p.X794_splice	ENST00000369303	NM_004440.3	794						NEWRECORD																																																																									
CD274	0	MSKCC	GRCh37	9	5462860	5462860	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	103	258	0	ENST00000381577.3:c.421A>T	p.Ile141Phe	p.I141F	ENST00000381577	NM_014143.3	141	Att/Ttt					NEWRECORD																																																																									
TMPRSS2	0	MSKCC	GRCh37	21	42852502	42852502	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012780-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	487	609	0	ENST00000398585.3:c.584T>C	p.Leu195Pro	p.L195P	ENST00000398585	NM_001135099.1	195	cTt/cCt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			965	97	533	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010247-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	133	451	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47142949	47142949	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			104	133	464	0	ENST00000409792.3:c.5014G>A	p.Gly1672Arg	p.G1672R	ENST00000409792	NM_014159.6	1672	Gga/Aga					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2958174	2958174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	291	456	2	ENST00000396946.4:c.2558G>A	p.Gly853Asp	p.G853D	ENST00000396946	NM_032415.4	853	gGc/gAc					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45651241	45651241	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	360	646	0	ENST00000407780.3:c.784G>T	p.Val262Phe	p.V262F	ENST00000407780	NM_001283052.1	262	Gtc/Ttc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188263	10188263	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	382	728	0	ENST00000256474.2:c.408delT	p.Phe136LeufsTer23	p.F136Lfs*23	ENST00000256474	NM_000551.3	136	Ttt/tt					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430957	181430978	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGGGACATGATCAGCATGTA	TCCGGGACATGATCAGCATGTA	-			P-0013090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	232	617	0	ENST00000325404.1:c.811_832del	p.Arg271SerfsTer93	p.R271Sfs*93	ENST00000325404	NM_003106.3	270	cTCCGGGACATGATCAGCATGTAt/ct					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52598228	52598228	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013090-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			99	188	331	0	ENST00000394830.3:c.3638del	p.Phe1213SerfsTer31	p.F1213Sfs*31	ENST00000394830	NM_018313.4	1213	tTc/tc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242468	55242482	+	inframe_deletion	In_Frame_Del	DEL	ATTAAGAGAAGCAAC	ATTAAGAGAAGCAAC	-			P-0011413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	98	416	0	ENST00000275493.2:c.2240_2254del	p.Leu747_Thr751del	p.L747_T751del	ENST00000275493	NM_005228.3	746	gaATTAAGAGAAGCAACa/gaa					NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40444033	40444033	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202112433		P-0011413-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1484	101	1004	0	ENST00000345506.4:c.329G>A	p.Arg110Gln	p.R110Q	ENST00000345506	NM_003152.3	110	cGg/cAg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29443618	29443618	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200585833		P-0014888-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	152	647	3	ENST00000389048.3:c.3599C>T	p.Ala1200Val	p.A1200V	ENST00000389048	NM_004304.4	1200	gCg/gTg					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012924-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	254	346	0	ENST00000286548.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000286548	NM_002072.3	209	cAa/cTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578193	7578193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	259	1010	2	ENST00000269305.4:c.656C>T	p.Pro219Leu	p.P219L	ENST00000269305	NM_001126112.2	219	cCc/cTc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685287	89685287	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			170	164	218	0	ENST00000371953.3:c.182del	p.His61LeufsTer38	p.H61Lfs*38	ENST00000371953	NM_000314.4	61	cAt/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578215	7578215	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014676-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			415	267	951	0	ENST00000269305.4:c.634T>G	p.Phe212Val	p.F212V	ENST00000269305	NM_001126112.2	212	Ttt/Gtt					NEWRECORD																																																																									
PTCH1	5727	MSKCC	GRCh37	9	98211549	98211549	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	409	418	4	ENST00000331920.6:c.3606del	p.Ser1203AlafsTer52	p.S1203Afs*52	ENST00000331920	NM_000264.3	1202	ccC/cc					NEWRECORD																																																																									
CREBBP	1387	MSKCC	GRCh37	16	3817721	3817721	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-	rs1378599948		P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	551	616	2	ENST00000262367.5:c.3250del	p.Ile1084SerfsTer15	p.I1084Sfs*15	ENST00000262367	NM_004380.2	1084	Atc/tc					NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56435161	56435161	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs781215815		P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	304	277	0	ENST00000407977.2:c.1976del	p.Gly659ValfsTer41	p.G659Vfs*41	ENST00000407977		659	gGt/gt					NEWRECORD																																																																									
JAK1	3716	MSKCC	GRCh37	1	65325833	65325833	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs777215086		P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	338	344	1	ENST00000342505.4:c.1289del	p.Pro430ArgfsTer2	p.P430Rfs*2	ENST00000342505	NM_002227.2	430	cCg/cg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	519	555	0	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65330611	65330611	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	493	504	2	ENST00000342505.4:c.1035delA	p.Lys345AsnfsTer32	p.K345Nfs*32	ENST00000342505	NM_002227.2	345	aaA/aa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52440912	52440912	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	426	442	2	ENST00000460680.1:c.592delG	p.Glu198ArgfsTer33	p.E198Rfs*33	ENST00000460680	NM_004656.3	198	Gag/ag					NEWRECORD																																																																									
IRS1	3667	MSKCC	GRCh37	2	227661664	227661664	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs765346312		P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	326	404	8	ENST00000305123.5:c.1791del	p.His598ThrfsTer38	p.H598Tfs*38	ENST00000305123	NM_005544.2	597	ggG/gg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5223131	5223131	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	500	549	1	ENST00000357368.4:c.2672C>T	p.Thr891Met	p.T891M	ENST00000357368	NM_002850.3	891	aCg/aTg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508793	106508793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	400	432	0	ENST00000359195.3:c.787G>A	p.Glu263Lys	p.E263K	ENST00000359195	NM_002649.2	263	Gaa/Aaa					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9624840	9624840	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	463	473	0	ENST00000353224.5:c.137C>T	p.Thr46Met	p.T46M	ENST00000353224	NM_177990.2	46	aCg/aTg					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39932171	39932171	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			50	661	740	1	ENST00000378444.4:c.2428C>T	p.Arg810Ter	p.R810*	ENST00000378444	NM_001123385.1	810	Cga/Tga					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64138915	64138915	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	315	320	0	ENST00000334205.4:c.2287delC	p.Arg763AlafsTer21	p.R763Afs*21	ENST00000334205	NM_003942.2	761	gCc/gc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55946269	55946269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	386	398	0	ENST00000263923.4:c.3910G>A	p.Gly1304Ser	p.G1304S	ENST00000263923	NM_002253.2	1304	Ggc/Agc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11132635	11132635	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	487	512	1	ENST00000344626.4:c.2854delG	p.Glu952LysfsTer5	p.E952Kfs*5	ENST00000344626	NM_003072.3	951	Ggg/gg					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128850322	128850322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	483	499	0	ENST00000249373.3:c.1585G>T	p.Gly529Cys	p.G529C	ENST00000249373	NM_005631.4	529	Ggc/Tgc					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202139638	202139638	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	513	516	0	ENST00000358485.4:c.799A>C	p.Ile267Leu	p.I267L	ENST00000358485	NM_001080125.1	267	Atc/Ctc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187522433	187522433	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	506	619	0	ENST00000441802.2:c.11630G>T	p.Ser3877Ile	p.S3877I	ENST00000441802	NM_005245.3	3877	aGc/aTc					NEWRECORD																																																																									
PNRC1	0	MSKCC	GRCh37	6	89790795	89790795	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs142250912		P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	551	552	0	ENST00000336032.3:c.182T>C	p.Leu61Pro	p.L61P	ENST00000336032	NM_006813.2	61	cTa/cCa					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553704	106553704	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	317	388	0	ENST00000369096.4:c.1669A>G	p.Thr557Ala	p.T557A	ENST00000369096	NM_001198.3	557	Acc/Gcc					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98231371	98231371	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	361	376	0	ENST00000331920.6:c.1912C>T	p.Arg638Cys	p.R638C	ENST00000331920	NM_000264.3	638	Cgc/Tgc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32910909	32910909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1649	123	872	0	ENST00000380152.3:c.2417A>G	p.Asp806Gly	p.D806G	ENST00000380152		806	gAt/gGt					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23647581	23647581	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	441	443	0	ENST00000261584.4:c.286A>T	p.Thr96Ser	p.T96S	ENST00000261584	NM_024675.3	96	Aca/Tca					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56852643	56852643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	649	600	3	ENST00000308159.5:c.557C>T	p.Ala186Val	p.A186V	ENST00000308159	NM_014669.4	186	gCg/gTg					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118954	3118954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	567	614	0	ENST00000078429.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000078429	NM_002067.2	213	cGg/cAg					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30314614	30314614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	528	632	0	ENST00000262643.3:c.1163C>T	p.Pro388Leu	p.P388L	ENST00000262643	NM_001238.2	388	cCt/cTt					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29115381	29115381	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	466	564	0	ENST00000328354.6:c.683+2T>C		p.X228_splice	ENST00000328354	NM_007194.3	228						NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37053531	37053531	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			73	534	589	0	ENST00000231790.2:c.618del	p.Leu207TyrfsTer22	p.L207Yfs*22	ENST00000231790	NM_000249.3	206	acA/ac					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241675274	241675276	+	inframe_deletion	In_Frame_Del	DEL	TTA	TTA	-			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	410	443	0	ENST00000366560.3:c.546_548del	p.Asn182del	p.N182del	ENST00000366560	NM_000143.3	182	aaTAAa/aaa					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760613	133760613	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	639	686	0	ENST00000318560.5:c.2940del	p.Val981PhefsTer88	p.V981Ffs*88	ENST00000318560	NM_005157.4	979	gCc/gc					NEWRECORD																																																																									
ANKRD11	29123	MSKCC	GRCh37	16	89349914	89349916	+	inframe_deletion	In_Frame_Del	DEL	CTT	CTT	-	rs761762028		P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1244	1036	1152	0	ENST00000301030.4:c.3034_3036del	p.Lys1012del	p.K1012del	ENST00000301030	NM_001256183.1	1012	AAG/-					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163377	47163377	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012977-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	327	365	1	ENST00000409792.3:c.2749del	p.Ser917ValfsTer5	p.S917Vfs*5	ENST00000409792	NM_014159.6	917	Agt/gt					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44941882	44941882	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010745-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	338	377	0	ENST00000377967.4:c.3206A>G	p.Asp1069Gly	p.D1069G	ENST00000377967	NM_021140.2	1069	gAt/gGt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	38	617	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692904	89692904	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	27	457	0	ENST00000371953.3:c.388C>G	p.Arg130Gly	p.R130G	ENST00000371953	NM_000314.4	130	Cga/Gga					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0013750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	38	808	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692790	89692790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	22	432	0	ENST00000371953.3:c.274G>T	p.Asp92Tyr	p.D92Y	ENST00000371953	NM_000314.4	92	Gac/Tac					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0012282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	219	470	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0012282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	23	615	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40979281	40979281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	301	588	0	ENST00000373198.4:c.1852G>A	p.Gly618Arg	p.G618R	ENST00000373198	NM_133170.3	618	Gga/Aga					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0012282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	414	620	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55129869	55129869	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	416	794	0	ENST00000257290.5:c.403G>A	p.Asp135Asn	p.D135N	ENST00000257290	NM_006206.4	135	Gat/Aat					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41737136	41737136	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	383	932	0	ENST00000301178.4:c.716C>T	p.Thr239Met	p.T239M	ENST00000301178	NM_021913.4	239	aCg/aTg					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25523087	25523087	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	201	672	0	ENST00000264709.3:c.98G>T	p.Arg33Leu	p.R33L	ENST00000264709	NM_175629.2	33	cGt/cTt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89457276	89457276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	122	571	0	ENST00000336596.2:c.1757G>A	p.Gly586Glu	p.G586E	ENST00000336596	NM_005233.5	586	gGg/gAg					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27840049	27840049	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2199	601	1234	0	ENST00000328488.2:c.45A>T	p.Lys15Asn	p.K15N	ENST00000328488	NM_003533.2	15	aaA/aaT					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18656281	18656281	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	257	601	1	ENST00000266497.5:c.2960G>A	p.Gly987Glu	p.G987E	ENST00000266497		987	gGa/gAa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858592	9858592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012282-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	386	974	1	ENST00000330684.3:c.2809G>A	p.Asp937Asn	p.D937N	ENST00000330684	NM_001134407.1	937	Gat/Aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014757-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			419	352	756	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0010975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	355	449	9	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0010975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	374	497	6	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133220080	133220080	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	495	581	14	ENST00000320574.5:c.4357A>G	p.Arg1453Gly	p.R1453G	ENST00000320574	NM_006231.2	1453	Agg/Ggg					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153253759	153253770	+	inframe_deletion	In_Frame_Del	DEL	CATTTCTCTCTC	CATTTCTCTCTC	-			P-0010975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	257	339	3	ENST00000281708.4:c.963_974del	p.Trp321_Lys324del	p.W321_K324del	ENST00000281708	NM_033632.3	321	tgGAGAGAGAAATGc/tgc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49033942	49033943	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	T			P-0010975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	362	363	8	ENST00000267163.4:c.2079_2080delinsT	p.Glu693AspfsTer3	p.E693Dfs*3	ENST00000267163	NM_000321.2	693	gaACtc/gaTtc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458003	120458003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	197	407	1	ENST00000256646.2:c.7342G>A	p.Ala2448Thr	p.A2448T	ENST00000256646	NM_024408.3	2448	Gct/Act					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	34	188	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0012755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1601	69	682	0	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0012755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	76	416	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63845627	63845627	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	55	244	0	ENST00000279873.7:c.1366G>T	p.Glu456Ter	p.E456*	ENST00000279873	NM_032199.2	456	Gaa/Taa					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69987057	69987057	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			931	116	463	0	ENST00000352241.4:c.439T>G	p.Leu147Val	p.L147V	ENST00000352241	NM_198159.2	147	Tta/Gta					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696598	47696598	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0012755-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	134	489	0	ENST00000347630.2:c.350T>C	p.Met117Thr	p.M117T	ENST00000347630	NM_001007230.1	117	aTg/aCg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670327	134670327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	363	232	0	ENST00000398015.3:c.238C>T	p.Arg80Trp	p.R80W	ENST00000398015	NM_004441.4	80	Cgg/Tgg					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65325851	65325851	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	227	260	0	ENST00000342505.4:c.1271G>T	p.Cys424Phe	p.C424F	ENST00000342505	NM_002227.2	424	tGc/tTc					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241671997	241671997	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	157	293	0	ENST00000366560.3:c.644A>G	p.His215Arg	p.H215R	ENST00000366560	NM_000143.3	215	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577504	7577507	+	protein_altering_variant	In_Frame_Del	DEL	GTCT	GTCT	C			P-0010272-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	199	314	0	ENST00000269305.4:c.774_777delinsG	p.Asp259del	p.D259del	ENST00000269305	NM_001126112.2	258	gaAGAC/gaG					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	128	560	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0013751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	61	321	0	ENST00000412916.2:c.165+1G>C		p.X55_splice	ENST00000412916		55						NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	26	855	4	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68835717	68835717	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	53	921	0	ENST00000261769.5:c.310del	p.Asp104ThrfsTer13	p.D104Tfs*13	ENST00000261769	NM_004360.3	103	tGg/tg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68853280	68853281	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	121	791	0	ENST00000261769.5:c.1664_1665del	p.His555ArgfsTer32	p.H555Rfs*32	ENST00000261769	NM_004360.3	555	CAc/c					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225346776	225346776	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	309	383	0	ENST00000264414.4:c.1862A>G	p.Asp621Gly	p.D621G	ENST00000264414	NM_003590.4	621	gAt/gGt					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23538792	23538792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010639-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	289	304	0	ENST00000380871.4:c.647G>A	p.Ser216Asn	p.S216N	ENST00000380871	NM_006167.3	216	aGc/aAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	301	689	1	ENST00000269305.4:c.811G>T	p.Glu271Ter	p.E271*	ENST00000269305	NM_001126112.2	271	Gag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173704	112173704	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	93	385	1	ENST00000257430.4:c.2413C>T	p.Arg805Ter	p.R805*	ENST00000257430	NM_000038.5	805	Cga/Tga					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17955109	17955109	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140784576		P-0011455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	173	528	0	ENST00000458235.1:c.118C>T	p.Arg40Cys	p.R40C	ENST00000458235	NM_000215.3	40	Cgc/Tgc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591915	48591915	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	86	558	0	ENST00000342988.3:c.1078G>T	p.Asp360Tyr	p.D360Y	ENST00000342988	NM_005359.5	360	Gat/Tat					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1325359	1325359	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	107	529	2	ENST00000381566.1:c.316G>A	p.Val106Ile	p.V106I	ENST00000381566		106	Gtt/Att					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11998926	11998927	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	T			P-0011455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	44	458	0	ENST00000353533.5:c.428_429delinsT	p.Lys143IlefsTer9	p.K143Ifs*9	ENST00000353533	NM_003010.3	143	aAA/aT					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099963	27099963	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	217	750	1	ENST00000324856.7:c.3842A>G	p.Tyr1281Cys	p.Y1281C	ENST00000324856	NM_006015.4	1281	tAt/tGt					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37665972	37665972	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0009908-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			412	232	343	0	ENST00000447079.4:c.2624T>A	p.Leu875Gln	p.L875Q	ENST00000447079	NM_015083.1	875	cTa/cAa					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618533	37618539	+	frameshift_variant	Frame_Shift_Del	DEL	TGGTGGA	TGGTGGA	-			P-0009908-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			871	370	504	0	ENST00000447079.4:c.209_215del	p.Leu70CysfsTer20	p.L70Cfs*20	ENST00000447079	NM_015083.1	70	tTGGTGGAg/tg					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64129364	64129364	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009908-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			618	419	586	0	ENST00000334205.4:c.796G>T	p.Gly266Trp	p.G266W	ENST00000334205	NM_003942.2	266	Ggg/Tgg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52438491	52438491	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	81	372	0	ENST00000460680.1:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000460680	NM_004656.3	410	Cag/Tag					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42035163	42035163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	154	592	0	ENST00000219905.7:c.5005C>T	p.Pro1669Ser	p.P1669S	ENST00000219905	NM_001164273.1	1669	Cct/Tct					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246550	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	TC	TC	CT			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	138	429	1	ENST00000349310.3:c.49_50delinsAG	p.Glu17Arg	p.E17R	ENST00000349310	NM_001014432.1	17	GAg/AGg					NEWRECORD																																																																									
IDH2	0	MSKCC	GRCh37	15	90634871	90634871	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	65	521	0	ENST00000330062.3:c.121G>A	p.Asp41Asn	p.D41N	ENST00000330062	NM_002168.2	41	Gac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577916	7578268	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAA	GATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCAAGCAGGGGAGGCCCTTAGCCTCTGTAAGCTTCAGTTTTTTCAACTGTGCAATAGTTAAACCCATTTACTTTGCACATCTCATGGGGTTATAGGGAGGTCAAATAAGCAGCAGGAGAAAGCCCCCCTACTGCTCACCTGGAGGGCCACTGACAACCACCCTTAACCCCTCCTCCCAGAGACCCCAGTTGCAAACCAGACCTCAGGCGGCTCATAGGGCACCACCACACTATGTCGAAAAGTGTTTCTGTCATCCAAATACTCCACACGCAAATTTCCTTCCACTCGGATAA	-			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			5	15	15	0	ENST00000269305.4:c.581_672+261del		p.X194_splice	ENST00000269305	NM_001126112.2	194						NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12011144	12011144	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	82	439	0	ENST00000353533.5:c.551C>A	p.Ser184Ter	p.S184*	ENST00000353533	NM_003010.3	184	tCg/tAg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29592359	29592359	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	95	442	0	ENST00000358273.4:c.4835+2T>G		p.X1612_splice	ENST00000358273	NM_001042492.2	1612						NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158655953	158655953	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	161	948	0	ENST00000263640.3:c.53C>T	p.Ser18Phe	p.S18F	ENST00000263640	NM_001105.4	18	tCc/tTc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151845430	151845430	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	136	561	1	ENST00000262189.6:c.13582C>T	p.Gln4528Ter	p.Q4528*	ENST00000262189	NM_170606.2	4528	Cag/Tag					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	102	595	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604656	48604656	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	79	393	0	ENST00000342988.3:c.1478A>G	p.Asp493Gly	p.D493G	ENST00000342988	NM_005359.5	493	gAt/gGt					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50450267	50450267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	70	607	0	ENST00000331340.3:c.451G>A	p.Gly151Arg	p.G151R	ENST00000331340	NM_006060.4	151	Ggg/Agg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27102089	27102095	+	frameshift_variant	Frame_Shift_Del	DEL	TAATGAT	TAATGAT	-			P-0013849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	107	859	0	ENST00000324856.7:c.5015_5021del	p.Val1672GlyfsTer15	p.V1672Gfs*15	ENST00000324856	NM_006015.4	1672	gTAATGATg/gg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46123652	46123676	+	frameshift_variant	Frame_Shift_Del	DEL	CGAGCGGAGAAAGGGACTCGCTTTC	CGAGCGGAGAAAGGGACTCGCTTTC	-			P-0013849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	101	484	0	ENST00000334344.6:c.34_58del	p.Glu12TrpfsTer38	p.E12Wfs*38	ENST00000334344	NM_152641.2	11	gaCGAGCGGAGAAAGGGACTCGCTTTC/ga					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56492590	56492590	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	124	585	0	ENST00000267101.3:c.2740G>C	p.Gly914Arg	p.G914R	ENST00000267101	NM_001982.3	914	Ggg/Cgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	532	432	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	262	379	1	ENST00000288602.6:c.1397G>A	p.Gly466Glu	p.G466E	ENST00000288602	NM_004333.4	466	gGa/gAa					NEWRECORD																																																																									
ID3	0	MSKCC	GRCh37	1	23885835	23885835	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1258	76	608	0	ENST00000374561.5:c.83G>C	p.Arg28Pro	p.R28P	ENST00000374561	NM_002167.4	28	cGa/cCa					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43803845	43803845	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	291	417	0	ENST00000372470.3:c.155G>A	p.Trp52Ter	p.W52*	ENST00000372470	NM_005373.2	52	tGg/tAg					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43812595	43812595	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	313	309	0	ENST00000372470.3:c.1298A>G	p.Gln433Arg	p.Q433R	ENST00000372470	NM_005373.2	433	cAg/cGg					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248520	59248520	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	107	468	0	ENST00000371222.2:c.223G>T	p.Glu75Ter	p.E75*	ENST00000371222	NM_002228.3	75	Gag/Tag					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156849849	156849849	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200022271		P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	448	376	0	ENST00000524377.1:c.2105G>T	p.Arg702Leu	p.R702L	ENST00000524377	NM_002529.3	702	cGt/cTt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212587160	212587160	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	471	483	0	ENST00000342788.4:c.841G>T	p.Ala281Ser	p.A281S	ENST00000342788	NM_005235.2	281	Gca/Tca					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149434875	149434875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	186	422	0	ENST00000286301.3:c.2579T>C	p.Leu860Pro	p.L860P	ENST00000286301	NM_005211.3	860	cTg/cCg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93965568	93965568	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	361	617	0	ENST00000369303.4:c.2360C>A	p.Pro787Gln	p.P787Q	ENST00000369303	NM_004440.3	787	cCa/cAa					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50450295	50450295	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	85	274	0	ENST00000331340.3:c.479T>G	p.Leu160Arg	p.L160R	ENST00000331340	NM_006060.4	160	cTg/cGg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509753	106509753	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	203	328	0	ENST00000359195.3:c.1747C>T	p.Leu583Phe	p.L583F	ENST00000359195	NM_002649.2	583	Ctt/Ttt					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116436041	116436041	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	313	488	0	ENST00000397752.3:c.4036G>T	p.Gly1346Trp	p.G1346W	ENST00000397752	NM_000245.2	1346	Ggg/Tgg					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741594	17741594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	82	74	0	ENST00000250003.3:c.265C>A	p.Gln89Lys	p.Q89K	ENST00000250003	NM_002478.4	89	Cag/Aag					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118343710	118343710	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	237	275	0	ENST00000534358.1:c.1836G>C	p.Leu612Phe	p.L612F	ENST00000534358	NM_005933.3	612	ttG/ttC					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119146772	119146772	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	385	466	0	ENST00000264033.4:c.935G>T	p.Gly312Val	p.G312V	ENST00000264033	NM_005188.3	312	gGg/gTg					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91354561	91354561	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	403	390	0	ENST00000355112.3:c.4001G>T	p.Arg1334Met	p.R1334M	ENST00000355112	NM_000057.2	1334	aGg/aTg					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23641698	23641698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	152	411	0	ENST00000261584.4:c.1777C>T	p.His593Tyr	p.H593Y	ENST00000261584	NM_024675.3	593	Cat/Tat					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023935	27023935	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	13	20	0	ENST00000324856.7:c.1042del	p.Ala348ProfsTer15	p.A348Pfs*15	ENST00000324856	NM_006015.4	347	gcG/gc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220627	1220646	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCCCGGCTTTCCAGCCGC	CTCCCCGGCTTTCCAGCCGC	-			P-0010558-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	310	388	0	ENST00000326873.7:c.646_665del	p.Ser216ArgfsTer43	p.S216Rfs*43	ENST00000326873	NM_000455.4	215	ggCTCCCCGGCTTTCCAGCCGCcc/ggcc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0011063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	80	329	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56161270	56161270	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	87	338	0	ENST00000399503.3:c.1139T>C	p.Leu380Ser	p.L380S	ENST00000399503	NM_005921.1	380	tTa/tCa					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0011063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	71	243	0	ENST00000412916.2:c.165+1G>T		p.X55_splice	ENST00000412916		55						NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	52	642	1	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0015075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			924	142	497	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579471	7579471	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691032		P-0015075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			907	130	618	0	ENST00000269305.4:c.216del	p.Val73TrpfsTer50	p.V73Wfs*50	ENST00000269305	NM_001126112.2	72	ccC/cc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120509114	120509114	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0015075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	45	345	0	ENST00000256646.2:c.1454-2A>T		p.X485_splice	ENST00000256646	NM_024408.3	485						NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9862866	9862866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			825	142	524	1	ENST00000330684.3:c.2437G>A	p.Asp813Asn	p.D813N	ENST00000330684	NM_001134407.1	813	Gac/Aac					NEWRECORD																																																																									
RAC2	0	MSKCC	GRCh37	22	37622750	37622750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1171	71	594	0	ENST00000249071.6:c.542C>T	p.Pro181Leu	p.P181L	ENST00000249071	NM_002872.4	181	cCc/cTc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53245075	53245075	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015075-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	81	310	0	ENST00000375401.3:c.865A>T	p.Lys289Ter	p.K289*	ENST00000375401	NM_004187.3	289	Aag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	59	342	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	73	341	0	ENST00000269305.4:c.388C>G	p.Leu130Val	p.L130V	ENST00000269305	NM_001126112.2	130	Ctc/Gtc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142285010	142285010	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	87	441	0	ENST00000350721.4:c.245T>C	p.Met82Thr	p.M82T	ENST00000350721	NM_001184.3	82	aTg/aCg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174430	112174430	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	61	216	0	ENST00000257430.4:c.3139G>T	p.Glu1047Ter	p.E1047*	ENST00000257430	NM_000038.5	1047	Gaa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175535	112175542	+	frameshift_variant	Frame_Shift_Del	DEL	GTGGCATT	GTGGCATT	-			P-0011144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	40	334	0	ENST00000257430.4:c.4244_4251del	p.Ser1415AsnfsTer5	p.S1415Nfs*5	ENST00000257430	NM_000038.5	1415	aGTGGCATT/a					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	601	769	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	718	535	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	210	548	1	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125523710	125523710	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	67	542	0	ENST00000428830.2:c.1303G>C	p.Asp435His	p.D435H	ENST00000428830	NM_001114121.2	435	Gat/Cat					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828347	72828347	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	351	921	0	ENST00000268489.5:c.8234T>C	p.Leu2745Pro	p.L2745P	ENST00000268489	NM_006885.3	2745	cTa/cCa					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40475057	40475057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	384	857	2	ENST00000264657.5:c.1853G>A	p.Gly618Asp	p.G618D	ENST00000264657	NM_139276.2	618	gGc/gAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178925	112178925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	228	562	0	ENST00000257430.4:c.7634G>A	p.Gly2545Glu	p.G2545E	ENST00000257430	NM_000038.5	2545	gGa/gAa					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117862919	117862919	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	347	702	0	ENST00000297338.2:c.1558G>C	p.Glu520Gln	p.E520Q	ENST00000297338	NM_006265.2	520	Gaa/Caa					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	407575	407575	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	161	663	1	ENST00000380956.4:c.1333C>T	p.Arg445Cys	p.R445C	ENST00000380956	NM_001195286.1	445	Cgc/Tgc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954378	48954378	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0013228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2	135	386	0	ENST00000267163.4:c.1498+1G>C		p.X500_splice	ENST00000267163	NM_000321.2	500						NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70008431	70008431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	45	294	1	ENST00000352241.4:c.1021C>T	p.Arg341Cys	p.R341C	ENST00000352241	NM_198159.2	341	Cgc/Tgc					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553482	106553482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	128	331	0	ENST00000369096.4:c.1447C>A	p.His483Asn	p.H483N	ENST00000369096	NM_001198.3	483	Cat/Aat					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65568271	65568271	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	211	373	0	ENST00000358664.4:c.56A>C	p.Gln19Pro	p.Q19P	ENST00000358664	NM_002382.4	19	cAa/cCa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5243963	5243963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	370	602	0	ENST00000357368.4:c.1519G>T	p.Val507Phe	p.V507F	ENST00000357368	NM_002850.3	507	Gtc/Ttc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53222358	53222358	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	432	1015	1	ENST00000375401.3:c.4474G>T	p.Val1492Phe	p.V1492F	ENST00000375401	NM_004187.3	1492	Gtc/Ttc					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23641130	23641130	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	63	720	0	ENST00000261584.4:c.2345del	p.Pro782GlnfsTer69	p.P782Qfs*69	ENST00000261584	NM_024675.3	782	cCa/ca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574026	7574032	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	CCACGGA	CCACGGA	-			P-0013228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			18	484	763	0	ENST00000269305.4:c.995_1001del	p.Ile332SerfsTer11	p.I332Sfs*11	ENST00000269305	NM_001126112.2	332	aTCCGTGGg/ag					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59761381	59761381	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013228-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	409	688	0	ENST00000259008.2:c.3026del	p.Gly1009AspfsTer50	p.G1009Dfs*50	ENST00000259008	NM_032043.2	1009	gGa/ga					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29910549	29910549	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs45585732		P-0012507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	18	72	0	ENST00000376809.5:c.89G>A	p.Arg30Lys	p.R30K	ENST00000376809	NM_002116.7	30	aGg/aAg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508365	106508365	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	21	170	0	ENST00000359195.3:c.359A>G	p.Asp120Gly	p.D120G	ENST00000359195	NM_002649.2	120	gAc/gGc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420237	49420237	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	112	574	1	ENST00000301067.7:c.15512G>A	p.Arg5171Gln	p.R5171Q	ENST00000301067	NM_003482.3	5171	cGg/cAg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108141613	108142080	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTTTCACCATATTGGCCAGGCTGTTCTCAAACTCCTGACCTTGTGATCTGCCTGCTTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCGGCCTATGTTTATATACTTTTTAAAGTAAATGATTTGTGGATAAACCTGATTTTTTTCCCTCCTACCATCTTAGTATCTAATGCTTTTAAAGGAGCTTCCTGGAGAAGAGTACCCCTTGCCAATGGAAGATGTTCTTGAACTTCTGAAACCACTATCGTAAGAAATTAAAACCTTATGTTATGTTCACTTTAAAGTTATAAAATAACTGATGTGTTCTGTTAAGCTTATAAAGTTGAACTTTTTTTTTTTTTTTACCACAGCAATGTGTGTTCTTTGTATCGTCGTGACCAAGATGTTTGTAAAACTATTTTAAACCATGTCCTTCATGTAGTGAAAAACCTAGGTCAAAGCAATATGGACTCT	GAGTTTCACCATATTGGCCAGGCTGTTCTCAAACTCCTGACCTTGTGATCTGCCTGCTTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCGGCCTATGTTTATATACTTTTTAAAGTAAATGATTTGTGGATAAACCTGATTTTTTTCCCTCCTACCATCTTAGTATCTAATGCTTTTAAAGGAGCTTCCTGGAGAAGAGTACCCCTTGCCAATGGAAGATGTTCTTGAACTTCTGAAACCACTATCGTAAGAAATTAAAACCTTATGTTATGTTCACTTTAAAGTTATAAAATAACTGATGTGTTCTGTTAAGCTTATAAAGTTGAACTTTTTTTTTTTTTTTACCACAGCAATGTGTGTTCTTTGTATCGTCGTGACCAAGATGTTTGTAAAACTATTTTAAACCATGTCCTTCATGTAGTGAAAAACCTAGGTCAAAGCAATATGGACTCT	-			P-0012507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	25	410	0	ENST00000278616.4:c.2839-175_3027del		p.X947_splice	ENST00000278616	NM_000051.3	947						NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138196006	138196006	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012507-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	41	290	0	ENST00000237289.4:c.321del	p.Thr108LeufsTer15	p.T108Lfs*15	ENST00000237289	NM_001270507.1	107	gCc/gc					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63661977	63661977	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0015008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			386	38	464	0	ENST00000279873.7:c.82del	p.His28ThrfsTer17	p.H28Tfs*17	ENST00000279873	NM_032199.2	27	ttC/tt					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64138773	64138773	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			423	104	1086	3	ENST00000334205.4:c.2140C>T	p.Arg714Trp	p.R714W	ENST00000334205	NM_003942.2	714	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578221	7578236	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTGTCATCCAAATA	TTCTGTCATCCAAATA	-			P-0015008-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	99	986	1	ENST00000269305.4:c.613_628del	p.Tyr205ThrfsTer37	p.Y205Tfs*37	ENST00000269305	NM_001126112.2	205	TATTTGGATGACAGAAac/ac					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578239	7578239	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	246	778	1	ENST00000269305.4:c.610G>T	p.Glu204Ter	p.E204*	ENST00000269305	NM_001126112.2	204	Gag/Tag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41274911	41274911	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	175	549	1	ENST00000349496.5:c.1161T>G	p.Asn387Lys	p.N387K	ENST00000349496	NM_001904.3	387	aaT/aaG					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42790999	42790999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	186	690	0	ENST00000575354.2:c.144G>T	p.Gln48His	p.Q48H	ENST00000575354	NM_015125.3	48	caG/caT					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66526059	66526059	+	splice_acceptor_variant	Splice_Site	DEL	A	A	-			P-0010914-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	207	493	1	ENST00000358598.2:c.892-2del		p.X298_splice	ENST00000358598	NM_212471.2	298						NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139401196	139401196	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	307	462	0	ENST00000277541.6:c.3873C>G	p.Phe1291Leu	p.F1291L	ENST00000277541	NM_017617.3	1291	ttC/ttG					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108117854	108117856	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	GGT	GGT	-			P-0013440-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			33	168	252	0	ENST00000278616.4:c.1065_1065+2del		p.X355_splice	ENST00000278616	NM_000051.3	355						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	77	375	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0012878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	135	267	1	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36938239	36938239	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs199991273		P-0012878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1899	146	530	0	ENST00000361632.4:c.722C>T	p.Ala241Val	p.A241V	ENST00000361632		241	gCg/gTg					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	112041211	112041211	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140762956		P-0012878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1790	148	641	5	ENST00000368678.4:c.44C>T	p.Thr15Met	p.T15M	ENST00000368678		15	aCg/aTg					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14020478	14020478	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1172	104	402	1	ENST00000311895.7:c.449G>A	p.Arg150His	p.R150H	ENST00000311895	NM_005236.2	150	cGc/cAc					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37627224	37627224	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200075664		P-0012878-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	81	388	0	ENST00000447079.4:c.1139G>A	p.Arg380His	p.R380H	ENST00000447079	NM_015083.1	380	cGt/cAt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106064	27106064	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	120	392	1	ENST00000324856.7:c.5675del	p.Thr1892LysfsTer31	p.T1892Kfs*31	ENST00000324856	NM_006015.4	1892	aCa/aa					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81609836	81609839	+	frameshift_variant	Frame_Shift_Del	DEL	CTCT	CTCT	-			P-0011064-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	116	331	0	ENST00000298171.2:c.1434_1437del	p.His478GlnfsTer34	p.H478Qfs*34	ENST00000298171	NM_000369.2	478	caCTCT/ca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	381	387	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0012592-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	431	424	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	298	435	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225365079	225365079	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	92	416	0	ENST00000264414.4:c.1610+1G>A		p.X537_splice	ENST00000264414	NM_003590.4	537						NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729174	66729174	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	109	495	0	ENST00000307102.5:c.382G>T	p.Gly128Cys	p.G128C	ENST00000307102	NM_002755.3	128	Ggc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578443	7578444	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	175	444	0	ENST00000269305.4:c.486_487del	p.Tyr163GlnfsTer17	p.Y163Qfs*17	ENST00000269305	NM_001126112.2	162	atCTac/atac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	70	343	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	69	301	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575194	48575194	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	72	269	0	ENST00000342988.3:c.388C>T	p.Pro130Ser	p.P130S	ENST00000342988	NM_005359.5	130	Cca/Tca					NEWRECORD																																																																									
RNF43	54894	MSKCC	GRCh37	17	56440643	56440643	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010788-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	171	565	2	ENST00000407977.2:c.575del	p.Pro192ArgfsTer11	p.P192Rfs*11	ENST00000407977		192	cCg/cg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	84	850	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578415	7578415	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	36	739	0	ENST00000269305.4:c.515T>A	p.Val172Asp	p.V172D	ENST00000269305	NM_001126112.2	172	gTt/gAt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945336	151945336	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012371-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	12	177	0	ENST00000262189.6:c.2183A>C	p.Glu728Ala	p.E728A	ENST00000262189	NM_170606.2	728	gAa/gCa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	258	454	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578461	7578461	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	306	683	2	ENST00000269305.4:c.469G>T	p.Val157Phe	p.V157F	ENST00000269305	NM_001126112.2	157	Gtc/Ttc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3820624	3820624	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			875	201	652	0	ENST00000262367.5:c.2827C>T	p.Gln943Ter	p.Q943*	ENST00000262367	NM_004380.2	943	Cag/Tag					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162688856	162688856	+	start_lost	Translation_Start_Site	SNP	G	G	C			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	129	434	0	ENST00000367921.3:c.3G>C	p.Met1?	p.M1?	ENST00000367921	NM_006182.2	1	atG/atC					NEWRECORD																																																																									
CYSLTR2	0	MSKCC	GRCh37	13	49281669	49281669	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	386	665	1	ENST00000282018.3:c.716G>T	p.Arg239Leu	p.R239L	ENST00000282018	NM_020377.2	239	cGg/cTg					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81946264	81946264	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			538	156	609	0	ENST00000359376.3:c.1997A>G	p.Asp666Gly	p.D666G	ENST00000359376	NM_002661.3	666	gAc/gGc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15288550	15288550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	13	50	0	ENST00000263388.2:c.4189G>A	p.Gly1397Arg	p.G1397R	ENST00000263388	NM_000435.2	1397	Ggg/Agg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41573913	41573913	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	283	622	0	ENST00000263253.7:c.6198G>T	p.Gln2066His	p.Q2066H	ENST00000263253	NM_001429.3	2066	caG/caT					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187535500	187535500	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			184	68	259	0	ENST00000441802.2:c.9076-2A>T		p.X3026_splice	ENST00000441802	NM_005245.3	3026						NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137525469	137525469	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	47	429	0	ENST00000367739.4:c.546G>T	p.Glu182Asp	p.E182D	ENST00000367739	NM_000416.2	182	gaG/gaT					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47038783	47038783	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	322	681	0	ENST00000329236.7:c.559G>T	p.Glu187Ter	p.E187*	ENST00000329236	NM_001204466.1	187	Gag/Tag					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044577	47044577	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	274	796	3	ENST00000329236.7:c.1840G>T	p.Ala614Ser	p.A614S	ENST00000329236	NM_001204466.1	614	Gct/Tct					NEWRECORD																																																																									
MLL4	0	MSKCC	GRCh37	19	36211003	36211003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014240-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	214	812	0	ENST00000222270.7:c.754C>T	p.Pro252Ser	p.P252S	ENST00000222270	NM_014727.1	252	Ccc/Tcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	545	701	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39923601	39923601	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	449	327	0	ENST00000378444.4:c.3490C>T	p.Arg1164Ter	p.R1164*	ENST00000378444	NM_001123385.1	1164	Cga/Tga					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	402121	402121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	498	723	0	ENST00000399788.2:c.4670A>T	p.Lys1557Ile	p.K1557I	ENST00000399788	NM_001042603.1	1557	aAa/aTa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142226774	142226774	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0013964-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	207	338	2	ENST00000350721.4:c.5030A>T	p.Gln1677Leu	p.Q1677L	ENST00000350721	NM_001184.3	1677	cAg/cTg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183769	10183769	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	103	330	0	ENST00000256474.2:c.238A>C	p.Ser80Arg	p.S80R	ENST00000256474	NM_000551.3	80	Agt/Cgt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152265629	152265629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	55	136	1	ENST00000206249.3:c.1082C>T	p.Ala361Val	p.A361V	ENST00000206249	NM_000125.3	361	gCg/gTg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72984856	72984856	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	172	362	0	ENST00000268489.5:c.2728G>A	p.Glu910Lys	p.E910K	ENST00000268489	NM_006885.3	910	Gag/Aag					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061098	38061098	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	26	47	0	ENST00000250448.2:c.891del	p.Ser298LeufsTer23	p.S298Lfs*23	ENST00000250448	NM_004496.3	297	ccC/cc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0014177-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	42	630	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	54	397	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa					NEWRECORD																																																																									
SDHD	0	MSKCC	GRCh37	11	111958593	111958593	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	100	419	0	ENST00000375549.3:c.65G>A	p.Arg22Gln	p.R22Q	ENST00000375549	NM_003002.3	22	cGa/cAa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720870	89720870	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	114	339	0	ENST00000371953.3:c.1021T>G	p.Phe341Val	p.F341V	ENST00000371953	NM_000314.4	341	Ttt/Gtt					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	178	717	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25976476	25976476	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	235	934	1	ENST00000435504.4:c.1069C>T	p.Arg357Ter	p.R357*	ENST00000435504		357	Cga/Tga					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73347916	73347916	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs139907646		P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	150	528	0	ENST00000377767.4:c.1145G>A	p.Arg382Gln	p.R382Q	ENST00000377767	NM_014953.3	382	cGa/cAa					NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	61	582	1	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333410	70333410	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	187	758	0	ENST00000373644.4:c.1315C>T	p.Pro439Ser	p.P439S	ENST00000373644	NM_030625.2	439	Cca/Tca					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31389107	31389107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	157	602	0	ENST00000328111.2:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000328111	NM_006892.3	674	Gaa/Aaa					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46509395	46509395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	153	682	2	ENST00000262741.5:c.1336G>A	p.Val446Ile	p.V446I	ENST00000262741	NM_003629.3	446	Gtc/Atc					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25982386	25982386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	168	547	0	ENST00000435504.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000435504		302	Cga/Tga					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212289020	212289020	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	109	532	0	ENST00000342788.4:c.2726C>A	p.Thr909Asn	p.T909N	ENST00000342788	NM_005235.2	909	aCt/aAt					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37070325	37070325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	168	778	2	ENST00000231790.2:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000231790	NM_000249.3	487	cGa/cAa					NEWRECORD																																																																									
MYD88	0	MSKCC	GRCh37	3	38181926	38181926	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	38	518	1	ENST00000396334.3:c.550G>A	p.Asp184Asn	p.D184N	ENST00000396334	NM_002468.4	184	Gac/Aac					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164385	47164385	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	141	442	0	ENST00000409792.3:c.1741G>T	p.Glu581Ter	p.E581*	ENST00000409792	NM_014159.6	581	Gaa/Taa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521741	89521741	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	99	441	2	ENST00000336596.2:c.2818T>C	p.Cys940Arg	p.C940R	ENST00000336596	NM_005233.5	940	Tgt/Cgt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66189868	66189868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	178	685	0	ENST00000273854.3:c.3078G>T	p.Met1026Ile	p.M1026I	ENST00000273854	NM_004439.5	1026	atG/atT					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66286249	66286249	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	151	607	0	ENST00000273854.3:c.1437A>C	p.Lys479Asn	p.K479N	ENST00000273854	NM_004439.5	479	aaA/aaC					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38954911	38954911	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	59	517	0	ENST00000357387.3:c.2662C>A	p.His888Asn	p.H888N	ENST00000357387	NM_152756.3	888	Cac/Aac					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86659183	86659183	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	105	388	0	ENST00000274376.6:c.1472A>C	p.Lys491Thr	p.K491T	ENST00000274376	NM_002890.2	491	aAa/aCa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177368	112177368	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	136	466	0	ENST00000257430.4:c.6077C>A	p.Ser2026Tyr	p.S2026Y	ENST00000257430	NM_000038.5	2026	tCt/tAt					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176709529	176709529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1069	207	808	0	ENST00000439151.2:c.5956C>T	p.Arg1986Cys	p.R1986C	ENST00000439151	NM_022455.4	1986	Cgc/Tgc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117710773	117710773	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	141	684	0	ENST00000368508.3:c.1499A>C	p.Lys500Thr	p.K500T	ENST00000368508	NM_002944.2	500	aAa/aCa					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81331930	81331930	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	63	439	0	ENST00000222390.5:c.2154A>C	p.Lys718Asn	p.K718N	ENST00000222390	NM_000601.4	718	aaA/aaC					NEWRECORD																																																																									
CDK6	0	MSKCC	GRCh37	7	92300747	92300747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	79	304	0	ENST00000265734.4:c.640C>T	p.Arg214Cys	p.R214C	ENST00000265734	NM_001259.6	214	Cgt/Tgt					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5089782	5089782	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	137	556	0	ENST00000381652.3:c.2680G>A	p.Asp894Asn	p.D894N	ENST00000381652	NM_004972.3	894	Gac/Aac					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89690835	89690835	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	114	336	0	ENST00000371953.3:c.242T>G	p.Phe81Cys	p.F81C	ENST00000371953	NM_000314.4	81	tTt/tGt					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741687	17741687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	136	506	2	ENST00000250003.3:c.358C>T	p.Arg120Cys	p.R120C	ENST00000250003	NM_002478.4	120	Cgc/Tgc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28608081	28608081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			769	211	900	0	ENST00000241453.7:c.1885G>A	p.Ala629Thr	p.A629T	ENST00000241453	NM_004119.2	629	Gct/Act					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3778477	3778477	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	88	834	0	ENST00000262367.5:c.6571G>A	p.Glu2191Lys	p.E2191K	ENST00000262367	NM_004380.2	2191	Gaa/Aaa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858255	9858255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	96	694	2	ENST00000330684.3:c.3146C>T	p.Pro1049Leu	p.P1049L	ENST00000330684	NM_001134407.1	1049	cCt/cTt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72830931	72830931	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	238	1259	2	ENST00000268489.5:c.5650G>T	p.Glu1884Ter	p.E1884*	ENST00000268489	NM_006885.3	1884	Gaa/Taa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29654829	29654829	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	122	450	0	ENST00000358273.4:c.5581A>C	p.Asn1861His	p.N1861H	ENST00000358273	NM_001042492.2	1861	Aat/Cat					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9624781	9624781	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	79	322	0	ENST00000353224.5:c.196C>T	p.Pro66Ser	p.P66S	ENST00000353224	NM_177990.2	66	Cct/Tct					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40980926	40980926	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012230-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	86	357	0	ENST00000373198.4:c.1561-1G>A		p.X521_splice	ENST00000373198	NM_133170.3	521						NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0005760-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			406	185	546	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5220080	5220080	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	287	428	0	ENST00000357368.4:c.3635G>T	p.Arg1212Leu	p.R1212L	ENST00000357368	NM_002850.3	1212	cGc/cTc					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186505637	186505637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	542	845	0	ENST00000323963.5:c.1045G>A	p.Asp349Asn	p.D349N	ENST00000323963		349	Gat/Aat					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	130	284	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46521565	46521565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	151	800	0	ENST00000262741.5:c.843G>C	p.Leu281Phe	p.L281F	ENST00000262741	NM_003629.3	281	ttG/ttC					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215645858	215645858	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	400	739	0	ENST00000260947.4:c.740C>T	p.Ser247Phe	p.S247F	ENST00000260947	NM_000465.2	247	tCt/tTt					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176696652	176696652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	277	558	0	ENST00000439151.2:c.5353G>A	p.Asp1785Asn	p.D1785N	ENST00000439151	NM_022455.4	1785	Gat/Aat					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69458635	69458635	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	65	579	0	ENST00000227507.2:c.450G>C	p.Trp150Cys	p.W150C	ENST00000227507	NM_053056.2	150	tgG/tgC					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26956987	26956987	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	193	365	0	ENST00000381527.3:c.493G>C	p.Glu165Gln	p.E165Q	ENST00000381527	NM_001260.1	165	Gag/Cag					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29012379	29012379	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	583	672	0	ENST00000282397.4:c.492C>A	p.Asn164Lys	p.N164K	ENST00000282397	NM_002019.4	164	aaC/aaA					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29663375	29663375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	270	470	0	ENST00000358273.4:c.6031C>G	p.Leu2011Val	p.L2011V	ENST00000358273	NM_001042492.2	2011	Cta/Gta					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59885981	59885981	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	258	583	0	ENST00000259008.2:c.765G>C	p.Gln255His	p.Q255H	ENST00000259008	NM_032043.2	255	caG/caC					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48934261	48934261	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0010894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	545	339	0	ENST00000267163.4:c.716del	p.Tyr239LeufsTer25	p.Y239Lfs*25	ENST00000267163	NM_000321.2	239	tAt/tt					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412033	116412048	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTTTCCAGAAGGTATA	TTTTCCAGAAGGTATA	-			P-0010894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	318	406	0	ENST00000397752.3:c.3021_3028+8del		p.X1007_splice	ENST00000397752	NM_000245.2	1007						NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156841505	156841505	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145222195		P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	30	497	0	ENST00000524377.1:c.808G>A	p.Asp270Asn	p.D270N	ENST00000524377	NM_002529.3	270	Gat/Aat					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	30	749	0	ENST00000304494.5:c.149A>G	p.Gln50Arg	p.Q50R	ENST00000304494	NM_000077.4	50	cAg/cGg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974678	21974678	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	30	749	0	ENST00000304494.5:c.149A>G	p.Gln50Arg	p.Q50R	ENST00000304494	NM_000077.4	50	cAg/cGg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120479912	120479912	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	35	593	0	ENST00000256646.2:c.3515G>C	p.Arg1172Thr	p.R1172T	ENST00000256646	NM_024408.3	1172	aGa/aCa					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206649702	206649702	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	17	331	0	ENST00000367120.3:c.537C>A	p.Tyr179Ter	p.Y179*	ENST00000367120	NM_014002.3	179	taC/taA					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61149207	61149207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	23	360	0	ENST00000295025.8:c.1397C>T	p.Ala466Val	p.A466V	ENST00000295025	NM_002908.2	466	gCc/gTc					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99152611	99152611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	33	624	0	ENST00000074304.5:c.407G>A	p.Gly136Glu	p.G136E	ENST00000074304	NM_001134224.1	136	gGa/gAa					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430385	181430385	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	27	569	0	ENST00000325404.1:c.237G>A	p.Trp79Ter	p.W79*	ENST00000325404	NM_003106.3	79	tgG/tgA					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117677967	117677967	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	48	791	0	ENST00000368508.3:c.3966C>A	p.Asn1322Lys	p.N1322K	ENST00000368508	NM_002944.2	1322	aaC/aaA					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135779181	135779181	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs202241429		P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	28	508	0	ENST00000298552.3:c.2065C>T	p.Arg689Cys	p.R689C	ENST00000298552	NM_001162426.1	689	Cgc/Tgc					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56437596	56437596	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	30	440	0	ENST00000407977.2:c.866C>T	p.Ser289Phe	p.S289F	ENST00000407977		289	tCc/tTc					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	743289	743289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	42	740	0	ENST00000314574.4:c.851G>A	p.Gly284Glu	p.G284E	ENST00000314574	NM_005433.3	284	gGa/gAa					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66905966	66905966	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	29	628	0	ENST00000374690.3:c.1883G>A	p.Gly628Glu	p.G628E	ENST00000374690	NM_000044.3	628	gGa/gAa					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72923649	72923650	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	37	868	0	ENST00000268489.5:c.3428_3429delinsAA	p.Arg1143Lys	p.R1143K	ENST00000268489	NM_006885.3	1143	aGG/aAA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579699	7579700	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AT			P-0012124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	52	588	0	ENST00000269305.4:c.96_96+1delinsAT		p.X32_splice	ENST00000269305	NM_001126112.2	32						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	195	457	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
FGFR3	2261	MSKCC	GRCh37	4	1803568	1803568	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913483		P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	324	648	0	ENST00000260795.2:c.746C>G	p.Ser249Cys	p.S249C	ENST00000260795		249	tCc/tGc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	762	550	1	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65310517	65310517	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	609	879	3	ENST00000342505.4:c.2171G>A	p.Arg724His	p.R724H	ENST00000342505	NM_002227.2	724	cGt/cAt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198265453	198265453	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	387	697	1	ENST00000335508.6:c.2704G>A	p.Glu902Lys	p.E902K	ENST00000335508	NM_012433.2	902	Gaa/Aaa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44942761	44942761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	609	589	0	ENST00000377967.4:c.3341C>T	p.Ser1114Leu	p.S1114L	ENST00000377967	NM_021140.2	1114	tCa/tTa					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247165	153247165	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	405	582	0	ENST00000281708.4:c.1637C>T	p.Ser546Leu	p.S546L	ENST00000281708	NM_033632.3	546	tCa/tTa					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43814652	43814652	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	455	623	2	ENST00000372470.3:c.1447G>A	p.Val483Met	p.V483M	ENST00000372470	NM_005373.2	483	Gtg/Atg					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47637326	47637326	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	553	1081	2	ENST00000233146.2:c.460G>T	p.Ala154Ser	p.A154S	ENST00000233146	NM_000251.2	154	Gca/Tca					NEWRECORD																																																																									
SHQ1	0	MSKCC	GRCh37	3	72799658	72799658	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	597	796	0	ENST00000325599.8:c.1511T>G	p.Ile504Ser	p.I504S	ENST00000325599	NM_018130.2	504	aTt/aGt					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157100533	157100533	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	370	455	1	ENST00000346085.5:c.1470G>A	p.Trp490Ter	p.W490*	ENST00000346085	NM_020732.3	490	tgG/tgA					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72827454	72827454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	885	1347	0	ENST00000268489.5:c.9127A>G	p.Ile3043Val	p.I3043V	ENST00000268489	NM_006885.3	3043	Atc/Gtc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16089932	16089932	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	397	656	1	ENST00000268712.3:c.178C>T	p.Gln60Ter	p.Q60*	ENST00000268712	NM_006311.3	60	Cag/Tag					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7119490	7119490	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	667	1052	0	ENST00000302850.5:c.3764T>C	p.Leu1255Pro	p.L1255P	ENST00000302850	NM_000208.2	1255	cTg/cCg					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7150532	7150532	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1227	108	862	2	ENST00000302850.5:c.2243C>A	p.Ser748Ter	p.S748*	ENST00000302850	NM_000208.2	748	tCa/tAa					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45856345	45856345	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	626	914	0	ENST00000391945.4:c.1827C>G	p.Asp609Glu	p.D609E	ENST00000391945	NM_000400.3	609	gaC/gaG					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123227924	123227924	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	608	506	0	ENST00000218089.9:c.3635T>C	p.Met1212Thr	p.M1212T	ENST00000218089	NM_001042749.1	1212	aTg/aCg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772230	68772236	+	frameshift_variant	Frame_Shift_Del	DEL	CCCTGCC	CCCTGCC	-			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	557	921	0	ENST00000261769.5:c.79_85del	p.Pro27ThrfsTer27	p.P27Tfs*27	ENST00000261769	NM_004360.3	27	CCCTGCCac/ac					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56774175	56774190	+	protein_altering_variant	In_Frame_Del	DEL	TGCATTCAGCACCTTC	TGCATTCAGCACCTTC	A			P-0010582-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	499	1017	0	ENST00000337432.4:c.526_541delinsA	p.Cys176_Gln181delinsLys	p.C176_Q181delinsK	ENST00000337432	NM_058216.2	176	TGCATTCAGCACCTTCag/Aag					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0008589-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			88	87	362	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226566888	226566888	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008589-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			146	162	584	0	ENST00000366794.5:c.1700A>T	p.Asn567Ile	p.N567I	ENST00000366794	NM_001618.3	567	aAc/aTc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49444987	49444987	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	29	278	0	ENST00000301067.7:c.2479del	p.Gln827AsnfsTer103	p.Q827Nfs*103	ENST00000301067	NM_003482.3	827	Caa/aa					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202131297	202131297	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	38	449	0	ENST00000358485.4:c.265A>G	p.Ile89Val	p.I89V	ENST00000358485	NM_001080125.1	89	Att/Gtt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89690821	89690830	+	stop_gained	Nonsense_Mutation	DEL	TGACACCGCC	TGACACCGCC	G			P-0013823-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	28	262	0	ENST00000371953.3:c.228_237delinsG	p.Tyr76_Ala79delinsTer	p.Y76_A79delins*	ENST00000371953	NM_000314.4	76	taTGACACCGCC/taG					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183788	10183788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	91	438	0	ENST00000256474.2:c.257C>T	p.Pro86Leu	p.P86L	ENST00000256474	NM_000551.3	86	cCc/cTc					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149447833	149447833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	133	599	0	ENST00000286301.3:c.1571C>T	p.Ser524Phe	p.S524F	ENST00000286301	NM_005211.3	524	tCc/tTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	99	374	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	106	354	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46267838	46267838	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011285-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	134	669	0	ENST00000371998.3:c.2599A>T	p.Ser867Cys	p.S867C	ENST00000371998		867	Agt/Tgt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	126	413	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597401	10597401	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	210	558	2	ENST00000171111.5:c.1802G>T	p.Arg601Leu	p.R601L	ENST00000171111	NM_203500.1	601	cGg/cTg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66189914	66189914	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	114	469	0	ENST00000273854.3:c.3032C>A	p.Thr1011Asn	p.T1011N	ENST00000273854	NM_004439.5	1011	aCt/aAt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999797	100999797	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	139	648	0	ENST00000325455.5:c.5C>G	p.Thr2Ser	p.T2S	ENST00000325455	NM_001202474.3	2	aCt/aGt					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21563303	21563303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	146	545	0	ENST00000382592.4:c.616G>A	p.Glu206Lys	p.E206K	ENST00000382592	NM_014572.2	206	Gag/Aag					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56440710	56440710	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	137	589	2	ENST00000407977.2:c.508G>T	p.Glu170Ter	p.E170*	ENST00000407977		170	Gag/Tag					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141499	11141499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	206	488	0	ENST00000344626.4:c.3476G>A	p.Gly1159Glu	p.G1159E	ENST00000344626	NM_003072.3	1159	gGg/gAg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220498	1220498	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011499-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	160	463	0	ENST00000326873.7:c.592del	p.Ala198ProfsTer89	p.A198Pfs*89	ENST00000326873	NM_000455.4	197	gtG/gt					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48027517	48027517	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	136	277	0	ENST00000234420.5:c.2395A>T	p.Met799Leu	p.M799L	ENST00000234420	NM_000179.2	799	Atg/Ttg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508257	106508257	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010868-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	30	170	0	ENST00000359195.3:c.251C>T	p.Ala84Val	p.A84V	ENST00000359195	NM_002649.2	84	gCg/gTg					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3832880	3832880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	181	406	0	ENST00000262367.5:c.1378G>T	p.Val460Phe	p.V460F	ENST00000262367	NM_004380.2	460	Gtt/Ttt					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0015059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			152	10	80	1	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8319965	8319965	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T	rs141403124		P-0015059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			293	28	164	0	ENST00000356435.5:c.5536G>A	p.Ala1846Thr	p.A1846T	ENST00000356435		1846	Gcg/Acg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577156	7577156	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0015059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	149	539	1	ENST00000269305.4:c.783-1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29496913	29496913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	75	198	0	ENST00000358273.4:c.484C>T	p.Gln162Ter	p.Q162*	ENST00000358273	NM_001042492.2	162	Cag/Tag					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93965664	93965664	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	135	489	0	ENST00000369303.4:c.2264T>C	p.Val755Ala	p.V755A	ENST00000369303	NM_004440.3	755	gTt/gCt					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553170	106553170	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015059-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	140	436	0	ENST00000369096.4:c.1135G>A	p.Ala379Thr	p.A379T	ENST00000369096	NM_001198.3	379	Gcg/Acg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	226	458	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga					NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52610695	52610695	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	117	494	4	ENST00000394830.3:c.3478C>T	p.Arg1160Ter	p.R1160*	ENST00000394830	NM_018313.4	1160	Cga/Tga					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56482342	56482342	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	201	618	0	ENST00000267101.3:c.890A>C	p.Asp297Ala	p.D297A	ENST00000267101	NM_001982.3	297	gAt/gCt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604785	48604785	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	144	352	0	ENST00000342988.3:c.1607T>G	p.Leu536Arg	p.L536R	ENST00000342988	NM_005359.5	536	cTa/cGa					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31386390	31386390	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	186	478	0	ENST00000328111.2:c.1615C>T	p.Arg539Trp	p.R539W	ENST00000328111	NM_006892.3	539	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7572936	7572940	+	frameshift_variant	Frame_Shift_Del	DEL	GTCAG	GTCAG	-			P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	272	883	0	ENST00000269305.4:c.1169_1173del	p.Pro390LeufsTer79	p.P390Lfs*79	ENST00000269305	NM_001126112.2	390	cCTGAC/c					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37687311	37687313	+	frameshift_variant	Frame_Shift_Del	DEL	TGC	TGC	GG			P-0010506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2886	175	511	0	ENST00000447079.4:c.4215_4217delinsGG	p.Phe1405LeufsTer6	p.F1405Lfs*6	ENST00000447079	NM_015083.1	1405	ttTGCc/ttGGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011323-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	23	362	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			440	163	615	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71008412	71008412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	95	474	1	ENST00000318789.4:c.2020G>A	p.Glu674Lys	p.E674K	ENST00000318789	NM_032682.5	674	Gag/Aag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692775	89692775	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	37	563	0	ENST00000371953.3:c.259C>T	p.Gln87Ter	p.Q87*	ENST00000371953	NM_000314.4	87	Caa/Taa					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69462759	69462759	+	splice_region_variant,intron_variant	Splice_Region	SNP	C	C	T			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			587	56	530	0	ENST00000227507.2:c.575-3C>T		p.X192_splice	ENST00000227507	NM_053056.2	192						NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42054015	42054015	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	178	597	0	ENST00000219905.7:c.7478del	p.Asn2493IlefsTer3	p.N2493Ifs*3	ENST00000219905	NM_001164273.1	2493	Aat/at					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063317	67063317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			336	45	350	1	ENST00000412916.2:c.7C>T	p.Arg3Cys	p.R3C	ENST00000412916		3	Cgc/Tgc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790105	40790105	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1001	62	705	0	ENST00000373198.4:c.2626G>T	p.Glu876Ter	p.E876*	ENST00000373198	NM_133170.3	876	Gag/Tag					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142281226	142281226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	88	743	0	ENST00000350721.4:c.1018G>C	p.Asp340His	p.D340H	ENST00000350721	NM_001184.3	340	Gat/Cat					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180043992	180043992	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014952-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	64	660	0	ENST00000261937.6:c.3004G>A	p.Glu1002Lys	p.E1002K	ENST00000261937	NM_182925.4	1002	Gag/Aag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	86	489	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
IRS2	8660	MSKCC	GRCh37	13	110435300	110435302	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-	rs765493638		P-0013891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			119	12	83	1	ENST00000375856.3:c.3099_3101del	p.Pro1036del	p.P1036del	ENST00000375856	NM_003749.2	1033	ccACCg/ccg					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40762881	40762881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	100	725	0	ENST00000392038.2:c.127G>A	p.Glu43Lys	p.E43K	ENST00000392038	NM_001626.4	43	Gag/Aag					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55604689	55604689	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	93	584	0	ENST00000288135.5:c.2897C>A	p.Ser966Tyr	p.S966Y	ENST00000288135	NM_000222.2	966	tCc/tAc					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27777925	27777925	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013891-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1823	258	1363	2	ENST00000369163.2:c.74C>A	p.Ala25Glu	p.A25E	ENST00000369163	NM_003536.2	25	gCg/gAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	106	436	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221243	1221243	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1467	209	708	0	ENST00000326873.7:c.766G>T	p.Glu256Ter	p.E256*	ENST00000326873	NM_000455.4	256	Gaa/Taa					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29917824	29917824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	78	633	1	ENST00000389048.3:c.844G>A	p.Asp282Asn	p.D282N	ENST00000389048	NM_004304.4	282	Gac/Aac					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52682459	52682459	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0011242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	109	372	0	ENST00000394830.3:c.715-1G>A		p.X239_splice	ENST00000394830	NM_018313.4	239						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600519	10600519	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	114	405	0	ENST00000171111.5:c.1336G>T	p.Glu446Ter	p.E446*	ENST00000171111	NM_203500.1	446	Gag/Tag					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70361206	70361206	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1216	152	722	0	ENST00000374080.3:c.6394C>T	p.Gln2132Ter	p.Q2132*	ENST00000374080		2132	Cag/Tag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27107151	27107152	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CG	CG	-			P-0011242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	77	294	0	ENST00000324856.7:c.6762_6763del	p.Tyr2254Ter	p.Y2254*	ENST00000324856	NM_006015.4	2254	taCGaa/taaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	167	651	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225367686	225367698	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGCCTGTAGAT	GTTGCCTGTAGAT	-			P-0012720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	30	479	0	ENST00000264414.4:c.1469_1481del	p.His490LeufsTer5	p.H490Lfs*5	ENST00000264414	NM_003590.4	490	cATCTACAGGCAACt/ct					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56440716	56440716	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	76	599	0	ENST00000407977.2:c.502G>A	p.Asp168Asn	p.D168N	ENST00000407977		168	Gac/Aac					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696426	47696426	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	187	736	0	ENST00000347630.2:c.397T>G	p.Phe133Val	p.F133V	ENST00000347630	NM_001007230.1	133	Ttc/Gtc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112179000	112179000	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	120	493	0	ENST00000257430.4:c.7709C>G	p.Ser2570Ter	p.S2570*	ENST00000257430	NM_000038.5	2570	tCa/tGa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151876968	151876968	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	163	695	0	ENST00000262189.6:c.7393C>T	p.Pro2465Ser	p.P2465S	ENST00000262189	NM_170606.2	2465	Ccc/Tcc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151877184	151877184	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	147	503	0	ENST00000262189.6:c.7177C>T	p.Gln2393Ter	p.Q2393*	ENST00000262189	NM_170606.2	2393	Cag/Tag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151877867	151877867	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	140	625	0	ENST00000262189.6:c.7078C>G	p.Pro2360Ala	p.P2360A	ENST00000262189	NM_170606.2	2360	Cca/Gca					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151877885	151877885	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	128	558	0	ENST00000262189.6:c.7060C>G	p.Gln2354Glu	p.Q2354E	ENST00000262189	NM_170606.2	2354	Caa/Gaa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151877926	151877926	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	133	457	0	ENST00000262189.6:c.7019C>G	p.Ser2340Cys	p.S2340C	ENST00000262189	NM_170606.2	2340	tCt/tGt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878028	151878028	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	127	507	0	ENST00000262189.6:c.6917C>G	p.Pro2306Arg	p.P2306R	ENST00000262189	NM_170606.2	2306	cCa/cGa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878212	151878212	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	148	632	0	ENST00000262189.6:c.6733C>G	p.Pro2245Ala	p.P2245A	ENST00000262189	NM_170606.2	2245	Cca/Gca					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81888065	81888065	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	239	933	2	ENST00000359376.3:c.213del	p.Glu72LysfsTer55	p.E72Kfs*55	ENST00000359376	NM_002661.3	70	atA/at					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	53	497	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	42	387	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436576	110436576	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	69	328	0	ENST00000375856.3:c.1825G>A	p.Ala609Thr	p.A609T	ENST00000375856	NM_003749.2	609	Gcg/Acg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	235	547	0	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063717	67063717	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0014283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			256	150	353	0	ENST00000412916.2:c.165+1G>C		p.X55_splice	ENST00000412916		55						NEWRECORD																																																																									
HIST1H3J	0	MSKCC	GRCh37	6	27858353	27858353	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138060838		P-0014283-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	81	453	0	ENST00000359303.2:c.218G>A	p.Arg73Gln	p.R73Q	ENST00000359303	NM_003535.2	73	cGa/cAa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678619	88678619	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148888023		P-0013393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	82	251	0	ENST00000360948.2:c.917G>A	p.Arg306His	p.R306H	ENST00000360948	NM_001012338.2	306	cGt/cAt					NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0013393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	354	472	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48916747	48916747	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	237	450	0	ENST00000267163.4:c.277C>T	p.Gln93Ter	p.Q93*	ENST00000267163	NM_000321.2	93	Caa/Taa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593635	55593662	+	protein_altering_variant	In_Frame_Del	DEL	TTATGTTTACATAGACCCAACACAACTT	TTATGTTTACATAGACCCAACACAACTT	GGAA			P-0013393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	334	679	0	ENST00000288135.5:c.1701_1728delinsGGAA	p.Asn567_Leu576delinsLysGlu	p.N567_L576delinsKE	ENST00000288135	NM_000222.2	567	aaTTATGTTTACATAGACCCAACACAACTT/aaGGAA					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31395608	31395608	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014811-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	185	521	0	ENST00000328111.2:c.2461A>C	p.Met821Leu	p.M821L	ENST00000328111	NM_006892.3	821	Atg/Ctg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	131	525	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SF3B1	23451	MSKCC	GRCh37	2	198266713	198266713	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs776846119		P-0013921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	93	593	0	ENST00000335508.6:c.2219G>A	p.Gly740Glu	p.G740E	ENST00000335508	NM_012433.2	740	gGa/gAa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573546	48573551	+	frameshift_variant	Frame_Shift_Del	DEL	GTAAAG	GTAAAG	TTAAA			P-0013921-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	126	636	1	ENST00000342988.3:c.130_135delinsTTAAA	p.Val44LeufsTer4	p.V44Lfs*4	ENST00000342988	NM_005359.5	44	GTAAAG/TTAAA					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	109	517	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	231	635	1	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207092	1207092	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	216	620	0	ENST00000326873.7:c.180C>G	p.Tyr60Ter	p.Y60*	ENST00000326873	NM_000455.4	60	taC/taG					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121431352	121431352	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	35	403	0	ENST00000257555.6:c.556A>G	p.Ile186Val	p.I186V	ENST00000257555		186	Att/Gtt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29684314	29684314	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	271	544	0	ENST00000358273.4:c.7897G>A	p.Glu2633Lys	p.E2633K	ENST00000358273	NM_001042492.2	2633	Gag/Aag					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41572362	41572362	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012976-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	39	494	0	ENST00000263253.7:c.4891C>T	p.Leu1631Phe	p.L1631F	ENST00000263253	NM_001429.3	1631	Ctc/Ttc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	77	171	3				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0010008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	383	502	4	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227662248	227662248	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	198	423	1	ENST00000305123.5:c.1207A>T	p.Thr403Ser	p.T403S	ENST00000305123	NM_005544.2	403	Acc/Tcc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	175	433	1	ENST00000349496.5:c.134C>A	p.Ser45Tyr	p.S45Y	ENST00000349496	NM_001904.3	45	tCt/tAt					NEWRECORD																																																																									
CD79A	0	MSKCC	GRCh37	19	42383347	42383347	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	229	503	0	ENST00000221972.3:c.367C>T	p.Leu123Phe	p.L123F	ENST00000221972	NM_021601.3	123	Ctc/Ttc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112546	115112547	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010008-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	127	342	0	ENST00000257566.3:c.1193_1194delinsTT	p.Thr398Ile	p.T398I	ENST00000257566	NM_016569.3	398	aCC/aTT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	150	457	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759554	133759554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	145	771	0	ENST00000318560.5:c.1877G>A	p.Gly626Asp	p.G626D	ENST00000318560	NM_005157.4	626	gGc/gAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	75	387	0	ENST00000269305.4:c.527G>C	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	tGc/tCc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532765	187532765	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013866-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	98	613	0	ENST00000441802.2:c.9628C>G	p.Leu3210Val	p.L3210V	ENST00000441802	NM_005245.3	3210	Ctg/Gtg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593600	55593611	+	inframe_deletion	In_Frame_Del	DEL	CAGTGGAAGGTT	CAGTGGAAGGTT	-			P-0015041-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			270	133	556	0	ENST00000288135.5:c.1666_1677del	p.Gln556_Val559del	p.Q556_V559del	ENST00000288135	NM_000222.2	556	CAGTGGAAGGTT/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577142	7577142	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009828-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			386	223	895	0	ENST00000269305.4:c.796G>A	p.Gly266Arg	p.G266R	ENST00000269305	NM_001126112.2	266	Gga/Aga					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115750	8115750	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009828-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1176	718	1202	3	ENST00000346208.3:c.1096C>T	p.Arg366Ter	p.R366*	ENST00000346208		366	Cga/Tga					NEWRECORD																																																																									
SHQ1	0	MSKCC	GRCh37	3	72842152	72842152	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009828-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			369	55	518	0	ENST00000325599.8:c.1096C>G	p.His366Asp	p.H366D	ENST00000325599	NM_018130.2	366	Cac/Gac					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356101	66356101	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009828-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			414	163	629	0	ENST00000273854.3:c.1396C>T	p.Gln466Ter	p.Q466*	ENST00000273854	NM_004439.5	466	Caa/Taa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	354	570	2	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	103	495	1	ENST00000269305.4:c.773A>C	p.Glu258Ala	p.E258A	ENST00000269305	NM_001126112.2	258	gAa/gCa					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102811690	102811690	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	74	724	2	ENST00000307046.8:c.494C>A	p.Thr165Lys	p.T165K	ENST00000307046	NM_001111285.1	165	aCa/aAa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2127622	2127622	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			405	54	649	1	ENST00000219476.3:c.2861A>T	p.Lys954Ile	p.K954I	ENST00000219476	NM_000548.3	954	aAa/aTa					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15375389	15375389	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	45	540	0	ENST00000263377.2:c.1038G>C	p.Lys346Asn	p.K346N	ENST00000263377	NM_058243.2	346	aaG/aaC					NEWRECORD																																																																									
MLL4	0	MSKCC	GRCh37	19	36214714	36214714	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			377	34	457	1	ENST00000222270.7:c.3140G>A	p.Arg1047Gln	p.R1047Q	ENST00000222270	NM_014727.1	1047	cGg/cAg					NEWRECORD																																																																									
ERF	0	MSKCC	GRCh37	19	42753293	42753293	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1030	66	894	0	ENST00000222329.4:c.971A>G	p.Tyr324Cys	p.Y324C	ENST00000222329	NM_006494.2	324	tAc/tGc					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25967284	25967284	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	44	431	0	ENST00000435504.4:c.1922G>T	p.Arg641Leu	p.R641L	ENST00000435504		641	cGt/cTt					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61717785	61717785	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			594	48	436	0	ENST00000401558.2:c.2014G>C	p.Ala672Pro	p.A672P	ENST00000401558	NM_003400.3	672	Gca/Cca					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189526205	189526205	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	148	702	2	ENST00000264731.3:c.469G>T	p.Asp157Tyr	p.D157Y	ENST00000264731	NM_003722.4	157	Gat/Tat					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180057792	180057792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			154	22	354	1	ENST00000261937.6:c.163C>T	p.His55Tyr	p.H55Y	ENST00000261937	NM_182925.4	55	Cac/Tac					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30679196	30679196	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014497-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	53	487	0	ENST00000376406.3:c.2214G>C	p.Gln738His	p.Q738H	ENST00000376406	NM_014641.2	738	caG/caC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	1263	338	0	ENST00000269305.4:c.799C>G	p.Arg267Gly	p.R267G	ENST00000269305	NM_001126112.2	267	Cgg/Ggg					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36935327	36935327	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1582	183	449	0	ENST00000361632.4:c.1400C>T	p.Pro467Leu	p.P467L	ENST00000361632		467	cCc/cTc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163853	47163853	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	369	263	0	ENST00000409792.3:c.2273A>G	p.Asp758Gly	p.D758G	ENST00000409792	NM_014159.6	758	gAt/gGt					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128200751	128200751	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	663	297	0	ENST00000341105.2:c.1054T>C	p.Cys352Arg	p.C352R	ENST00000341105	NM_032638.4	352	Tgt/Cgt					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116340201	116340201	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	127	236	0	ENST00000397752.3:c.1063G>C	p.Glu355Gln	p.E355Q	ENST00000397752	NM_000245.2	355	Gaa/Caa					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69631192	69631192	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0011456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	346	374	0	ENST00000334134.2:c.221-1G>C		p.X74_splice	ENST00000334134	NM_005247.2	74						NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7984024	7984024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	677	202	0	ENST00000319144.4:c.602G>A	p.Arg201His	p.R201H	ENST00000319144	NM_001139.2	201	cGc/cAc					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12044563	12044563	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	954	268	0	ENST00000353533.5:c.1186A>T	p.Met396Leu	p.M396L	ENST00000353533	NM_003010.3	396	Atg/Ttg					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50910270	50910270	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	1096	498	0	ENST00000440232.2:c.1525G>C	p.Ala509Pro	p.A509P	ENST00000440232	NM_002691.3	509	Gct/Cct					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944559	40944559	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	472	222	0	ENST00000373198.4:c.1943T>G	p.Val648Gly	p.V648G	ENST00000373198	NM_133170.3	648	gTg/gGg					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121434152	121434153	+	missense_variant	Missense_Mutation	DNP	TC	TC	AA			P-0011456-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	390	340	0	ENST00000257555.6:c.1043_1044delinsAA	p.Leu348Gln	p.L348Q	ENST00000257555		348	cTC/cAA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			290	120	155	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	213	387	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	187	442	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	421	695	0	ENST00000256078.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000256078	NM_033360.2	61	cAa/cGa					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411576	63411576	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	493	491	3	ENST00000330258.3:c.1591C>T	p.Arg531Ter	p.R531*	ENST00000330258	NM_152424.3	531	Cga/Tga					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31021190	31021190	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013785-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	344	620	0	ENST00000375687.4:c.1189C>T	p.Arg397Cys	p.R397C	ENST00000375687	NM_015338.5	397	Cgt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	45	601	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt					NEWRECORD																																																																									
SMARCD1	0	MSKCC	GRCh37	12	50492754	50492754	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	77	630	0	ENST00000394963.4:c.1519G>C	p.Glu507Gln	p.E507Q	ENST00000394963	NM_003076.4	507	Gag/Cag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72991508	72991508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	64	932	0	ENST00000268489.5:c.2537G>T	p.Arg846Leu	p.R846L	ENST00000268489	NM_006885.3	846	cGc/cTc					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138664918	138664918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014675-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			371	22	303	0	ENST00000330315.3:c.647C>A	p.Ala216Asp	p.A216D	ENST00000330315	NM_023067.3	216	gCc/gAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0015016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	161	397	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88679190	88679190	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			173	62	238	1	ENST00000372037.3:c.1130G>T	p.Cys377Phe	p.C377F	ENST00000372037	NM_004329.2	377	tGc/tTc					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123247549	123247549	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			571	83	505	1	ENST00000358487.5:c.1942G>A	p.Ala648Thr	p.A648T	ENST00000358487	NM_000141.4	648	Gcc/Acc					NEWRECORD																																																																									
LMO1	0	MSKCC	GRCh37	11	8251977	8251977	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015016-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			899	237	660	0	ENST00000335790.3:c.100C>T	p.Arg34Cys	p.R34C	ENST00000335790	NM_002315.2	34	Cgc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			834	1442	412	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0014462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	303	585	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63533760	63533760	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	90	384	0	ENST00000307078.5:c.1394G>A	p.Arg465His	p.R465H	ENST00000307078	NM_004655.3	465	cGc/cAc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	91	381	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51						NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	91	381	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51						NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971208	21971208	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	91	381	0	ENST00000304494.5:c.151-1G>A		p.X51_splice	ENST00000304494	NM_000077.4	51						NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63533789	63533790	+	missense_variant	Missense_Mutation	DNP	TG	TG	CA			P-0014462-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			701	198	407	1	ENST00000307078.5:c.1364_1365inv	p.Pro455Leu	p.P455L	ENST00000307078	NM_004655.3	455	cCA/cTG					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	56	318	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	103	479	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0013512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	64	969	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128752960	128752960	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	243	576	0	ENST00000377970.2:c.1121A>G	p.His374Arg	p.H374R	ENST00000377970	NM_002467.4	374	cAc/cGc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916930	178916930	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	27	837	2	ENST00000263967.3:c.317G>A	p.Gly106Asp	p.G106D	ENST00000263967	NM_006218.2	106	gGc/gAc					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187451423	187451423	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	57	530	0	ENST00000232014.4:c.59T>C	p.Leu20Pro	p.L20P	ENST00000232014	NM_001130845.1	20	cTc/cCc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176665247	176665247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	21	410	0	ENST00000439151.2:c.3931C>T	p.Arg1311Cys	p.R1311C	ENST00000439151	NM_022455.4	1311	Cgc/Tgc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8319964	8319964	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	82	409	0	ENST00000356435.5:c.5537C>T	p.Ala1846Val	p.A1846V	ENST00000356435		1846	gCg/gTg					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36840576	36840576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	53	632	0	ENST00000358127.4:c.1157C>T	p.Thr386Ile	p.T386I	ENST00000358127	NM_001280556.1	386	aCt/aTt					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93650036	93650036	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	146	605	0	ENST00000375746.1:c.1587G>C	p.Gln529His	p.Q529H	ENST00000375746	NM_001174167.1	529	caG/caC					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105648	27105648	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	135	636	0	ENST00000324856.7:c.5259del	p.Ser1754LeufsTer16	p.S1754Lfs*16	ENST00000324856	NM_006015.4	1753	gtG/gt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	43	501	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577096	7577096	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1235	75	672	0	ENST00000269305.4:c.842A>T	p.Asp281Val	p.D281V	ENST00000269305	NM_001126112.2	281	gAc/gTc					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47707969	47707969	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	26	445	0	ENST00000233146.2:c.2593A>G	p.Ile865Val	p.I865V	ENST00000233146	NM_000251.2	865	Atc/Gtc					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430953	181430953	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	74	584	2	ENST00000325404.1:c.805G>T	p.Asp269Tyr	p.D269Y	ENST00000325404	NM_003106.3	269	Gac/Tac					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187449612	187449612	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	62	488	1	ENST00000232014.4:c.268A>T	p.Met90Leu	p.M90L	ENST00000232014	NM_001130845.1	90	Atg/Ttg					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56478932	56478932	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	106	764	0	ENST00000267101.3:c.388G>C	p.Ala130Pro	p.A130P	ENST00000267101	NM_001982.3	130	Gct/Cct					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86628366	86628366	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			168	13	432	2	ENST00000274376.6:c.739del	p.Ser247LeufsTer6	p.S247Lfs*6	ENST00000274376	NM_002890.2	245	cgT/cg					NEWRECORD																																																																									
CCND2	0	MSKCC	GRCh37	12	4409146	4409147	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0010923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	83	566	0	ENST00000261254.3:c.841_842delinsAA	p.Pro281Asn	p.P281N	ENST00000261254	NM_001759.3	281	CCt/AAt					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38510627	38510628	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0010923-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1127	82	786	1	ENST00000254066.5:c.881_882delinsAT	p.Arg294His	p.R294H	ENST00000254066	NM_000964.3	294	cGG/cAT					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	88	277	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25470570	25470570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	159	528	0	ENST00000264709.3:c.904G>T	p.Gly302Cys	p.G302C	ENST00000264709	NM_175629.2	302	Ggc/Tgc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643682	52643682	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0012682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	110	319	0	ENST00000394830.3:c.2214C>G	p.Tyr738Ter	p.Y738*	ENST00000394830	NM_018313.4	738	taC/taG					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54961430	54961430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			249	63	126	0	ENST00000312783.6:c.202C>A	p.His68Asn	p.H68N	ENST00000312783	NM_198436.1	68	Cac/Aac					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47127775	47127775	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	61	286	0	ENST00000409792.3:c.5307del	p.Leu1771TrpfsTer16	p.L1771Wfs*16	ENST00000409792	NM_014159.6	1769	tcC/tc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183750	10183757	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCATCT	GGTCATCT	-			P-0012682-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	110	325	0	ENST00000256474.2:c.219_226del	p.Gln73HisfsTer56	p.Q73Hfs*56	ENST00000256474	NM_000551.3	73	caGGTCATCTtc/catc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	136	330	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	532	514	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	141	301	0	ENST00000263967.3:c.1624G>C	p.Glu542Gln	p.E542Q	ENST00000263967	NM_006218.2	542	Gaa/Caa					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78433848	78433848	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0013491-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	301	681	0	ENST00000370768.2:c.250+1G>C		p.X84_splice	ENST00000370768	NM_003902.3	84						NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	203	353	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164586	36164586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			592	107	393	0	ENST00000300305.3:c.1289C>T	p.Pro430Leu	p.P430L	ENST00000300305		430	cCg/cTg					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6439805	6439805	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014518-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	75	307	0	ENST00000356142.4:c.331A>T	p.Asn111Tyr	p.N111Y	ENST00000356142	NM_018890.3	111	Aat/Tat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	95	506	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1437	157	835	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	28	129	1	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974799	21974799	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	28	129	1	ENST00000304494.5:c.28G>T	p.Glu10Ter	p.E10*	ENST00000304494	NM_000077.4	10	Gag/Tag					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57751477	57751477	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012844-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1504	118	763	1	ENST00000274289.3:c.1514C>A	p.Thr505Asn	p.T505N	ENST00000274289	NM_006622.3	505	aCc/aAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	23	336	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578269	7578269	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs587780071		P-0011481-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	22	491	0	ENST00000269305.4:c.580C>T	p.Leu194Phe	p.L194F	ENST00000269305	NM_001126112.2	194	Ctt/Ttt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100909954	100909954	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	462	515	4	ENST00000325455.5:c.2695C>T	p.Arg899Trp	p.R899W	ENST00000325455	NM_001202474.3	899	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578176	7578176	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0014960-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			210	360	708	1	ENST00000269305.4:c.672+1G>A		p.X224_splice	ENST00000269305	NM_001126112.2	224						NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106354	27106355	+	stop_gained	Nonsense_Mutation	DNP	CG	CG	TA			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	111	514	0	ENST00000324856.7:c.5965_5966delinsTA	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	CGa/TAa					NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36824350	36824350	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	113	746	0	ENST00000373129.3:c.186C>A	p.Phe62Leu	p.F62L	ENST00000373129	NM_032017.1	62	ttC/ttA					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40363641	40363641	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	38	285	0	ENST00000397332.2:c.588G>T	p.Glu196Asp	p.E196D	ENST00000397332	NM_001033082.2	196	gaG/gaT					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43812557	43812557	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	59	714	0	ENST00000372470.3:c.1260G>T	p.Glu420Asp	p.E420D	ENST00000372470	NM_005373.2	420	gaG/gaT					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45799124	45799124	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1089	136	821	0	ENST00000372115.3:c.267G>A	p.Trp89Ter	p.W89*	ENST00000372115	NM_001048171.1	89	tgG/tgA					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46736343	46736343	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	82	598	0	ENST00000371975.4:c.1055A>C	p.Glu352Ala	p.E352A	ENST00000371975	NM_003579.3	352	gAa/gCa					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65303689	65303689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	106	654	0	ENST00000342505.4:c.3066C>A	p.Phe1022Leu	p.F1022L	ENST00000342505	NM_002227.2	1022	ttC/ttA					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156849818	156849818	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	57	659	0	ENST00000524377.1:c.2074C>T	p.Arg692Cys	p.R692C	ENST00000524377	NM_002529.3	692	Cgc/Tgc					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162741934	162741934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			940	78	658	0	ENST00000367921.3:c.1625C>T	p.Ala542Val	p.A542V	ENST00000367921	NM_006182.2	542	gCc/gTc					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193094309	193094309	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	76	525	0	ENST00000367435.3:c.199G>A	p.Val67Met	p.V67M	ENST00000367435	NM_024529.4	67	Gtg/Atg					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16082361	16082361	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	60	583	0	ENST00000281043.3:c.175C>T	p.Pro59Ser	p.P59S	ENST00000281043	NM_005378.4	59	Ccc/Tcc					NEWRECORD																																																																									
EPCAM	0	MSKCC	GRCh37	2	47607023	47607023	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			998	72	646	0	ENST00000263735.4:c.773A>T	p.Glu258Val	p.E258V	ENST00000263735	NM_002354.2	258	gAa/gTa					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48026558	48026558	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	94	649	0	ENST00000234420.5:c.1436A>C	p.Lys479Thr	p.K479T	ENST00000234420	NM_000179.2	479	aAa/aCa					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48026918	48026918	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	87	656	1	ENST00000234420.5:c.1796G>T	p.Gly599Val	p.G599V	ENST00000234420	NM_000179.2	599	gGa/gTa					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48028004	48028004	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	57	608	3	ENST00000234420.5:c.2882G>T	p.Arg961Ile	p.R961I	ENST00000234420	NM_000179.2	961	aGa/aTa					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48028071	48028071	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	62	630	0	ENST00000234420.5:c.2949G>T	p.Glu983Asp	p.E983D	ENST00000234420	NM_000179.2	983	gaG/gaT					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	97	728	0	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa					NEWRECORD																																																																									
CXCR4	0	MSKCC	GRCh37	2	136872857	136872857	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1430	156	1054	0	ENST00000241393.3:c.641T>C	p.Val214Ala	p.V214A	ENST00000241393	NM_003467.2	214	gTc/gCc					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198270171	198270171	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	97	479	0	ENST00000335508.6:c.1265T>C	p.Val422Ala	p.V422A	ENST00000335508	NM_012433.2	422	gTt/gCt					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215593510	215593510	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	71	454	0	ENST00000260947.4:c.2224T>A	p.Leu742Met	p.L742M	ENST00000260947	NM_000465.2	742	Ttg/Atg					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220440237	220440237	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1308	185	998	0	ENST00000243786.2:c.1090G>C	p.Ala364Pro	p.A364P	ENST00000243786	NM_002191.3	364	Gct/Cct					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47147533	47147533	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	78	570	0	ENST00000409792.3:c.4793G>A	p.Arg1598Gln	p.R1598Q	ENST00000409792	NM_014159.6	1598	cGa/cAa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163775	47163775	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	71	623	0	ENST00000409792.3:c.2351C>A	p.Ser784Tyr	p.S784Y	ENST00000409792	NM_014159.6	784	tCt/tAt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164118	47164118	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	62	480	2	ENST00000409792.3:c.2008G>T	p.Glu670Ter	p.E670*	ENST00000409792	NM_014159.6	670	Gaa/Taa					NEWRECORD																																																																									
MST1	0	MSKCC	GRCh37	3	49725042	49725042	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs182179992		P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	81	746	3	ENST00000449682.2:c.302C>T	p.Ser101Leu	p.S101L	ENST00000449682	NM_020998.3	101	tCg/tTg					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	69987135	69987135	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	66	560	0	ENST00000352241.4:c.517C>T	p.Pro173Ser	p.P173S	ENST00000352241	NM_198159.2	173	Ccg/Tcg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142178136	142178136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	72	542	1	ENST00000350721.4:c.7282C>A	p.Leu2428Ile	p.L2428I	ENST00000350721	NM_001184.3	2428	Ctc/Atc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142253981	142253981	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	78	580	0	ENST00000350721.4:c.3886A>C	p.Asn1296His	p.N1296H	ENST00000350721	NM_001184.3	1296	Aat/Cat					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142269071	142269071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	96	653	0	ENST00000350721.4:c.2879G>A	p.Arg960Gln	p.R960Q	ENST00000350721	NM_001184.3	960	cGa/cAa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142280127	142280127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	118	709	1	ENST00000350721.4:c.1307C>T	p.Ser436Leu	p.S436L	ENST00000350721	NM_001184.3	436	tCg/tTg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	115	651	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185155325	185155325	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	110	683	3	ENST00000265026.3:c.566C>T	p.Ala189Val	p.A189V	ENST00000265026	NM_004721.4	189	gCg/gTg					NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187443345	187443345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	63	562	0	ENST00000232014.4:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000232014	NM_001130845.1	594	cGa/cAa					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187451339	187451339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200263685		P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	94	541	0	ENST00000232014.4:c.143C>T	p.Thr48Met	p.T48M	ENST00000232014	NM_001130845.1	48	aCg/aTg					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41749438	41749438	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	72	537	0	ENST00000226382.2:c.357G>T	p.Glu119Asp	p.E119D	ENST00000226382	NM_003924.3	119	gaG/gaT					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55133555	55133555	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	87	678	1	ENST00000257290.5:c.859G>T	p.Asp287Tyr	p.D287Y	ENST00000257290	NM_006206.4	287	Gat/Tat					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55140704	55140704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	57	544	0	ENST00000257290.5:c.1565G>A	p.Arg522His	p.R522H	ENST00000257290	NM_006206.4	522	cGt/cAt					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55144623	55144623	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1035	59	662	1	ENST00000257290.5:c.2097G>T	p.Glu699Asp	p.E699D	ENST00000257290	NM_006206.4	699	gaG/gaT					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55953804	55953804	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1145	86	722	0	ENST00000263923.4:c.3632A>G	p.Lys1211Arg	p.K1211R	ENST00000263923	NM_002253.2	1211	aAa/aGa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356121	66356121	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	70	640	0	ENST00000273854.3:c.1376C>T	p.Ser459Phe	p.S459F	ENST00000273854	NM_004439.5	459	tCt/tTt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467731	66467731	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	174	722	2	ENST00000273854.3:c.538G>A	p.Asp180Asn	p.D180N	ENST00000273854	NM_004439.5	180	Gat/Aat					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106155851	106155851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	61	529	0	ENST00000380013.4:c.752C>T	p.Ala251Val	p.A251V	ENST00000380013	NM_001127208.2	251	gCc/gTc					NEWRECORD																																																																									
INPP4B	8821	MSKCC	GRCh37	4	143159099	143159099	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs1332432216		P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	100	642	2	ENST00000262992.4:c.754C>T	p.Arg252Ter	p.R252*	ENST00000262992	NM_001101669.1	252	Cga/Tga					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153332699	153332699	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	191	726	1	ENST00000281708.4:c.257C>T	p.Ser86Leu	p.S86L	ENST00000281708	NM_033632.3	86	tCg/tTg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187525029	187525029	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	69	470	0	ENST00000441802.2:c.10651T>G	p.Phe3551Val	p.F3551V	ENST00000441802	NM_005245.3	3551	Ttc/Gtc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187530344	187530344	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	87	705	1	ENST00000441802.2:c.10199G>A	p.Arg3400Gln	p.R3400Q	ENST00000441802	NM_005245.3	3400	cGa/cAa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187530456	187530456	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	178	566	0	ENST00000441802.2:c.10087G>A	p.Asp3363Asn	p.D3363N	ENST00000441802	NM_005245.3	3363	Gat/Aat					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187539112	187539112	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	64	605	2	ENST00000441802.2:c.8628C>A	p.Asp2876Glu	p.D2876E	ENST00000441802	NM_005245.3	2876	gaC/gaA					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1272311	1272311	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs141425941		P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	105	628	0	ENST00000310581.5:c.2371G>A	p.Val791Ile	p.V791I	ENST00000310581	NM_198253.2	791	Gtc/Atc					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295274	1295274	+	upstream_gene_variant	5'Flank	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	70	507	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35861083	35861083	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	69	462	0	ENST00000303115.3:c.212T>G	p.Phe71Cys	p.F71C	ENST00000303115	NM_002185.3	71	tTt/tGt					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38950622	38950622	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1385	169	901	1	ENST00000357387.3:c.3328C>T	p.Arg1110Cys	p.R1110C	ENST00000357387	NM_152756.3	1110	Cgt/Tgt					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56176614	56176614	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	58	387	0	ENST00000399503.3:c.2164G>T	p.Glu722Ter	p.E722*	ENST00000399503	NM_005921.1	722	Gaa/Taa					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57754575	57754575	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			893	97	650	2	ENST00000274289.3:c.472C>A	p.Leu158Ile	p.L158I	ENST00000274289	NM_006622.3	158	Ctc/Atc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86628323	86628323	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	81	451	0	ENST00000274376.6:c.693-1G>A		p.X231_splice	ENST00000274376	NM_002890.2	231						NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86675576	86675576	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	57	514	1	ENST00000274376.6:c.2512A>T	p.Asn838Tyr	p.N838Y	ENST00000274376	NM_002890.2	838	Aat/Tat					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177901	112177901	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	95	540	0	ENST00000257430.4:c.6610C>T	p.Arg2204Ter	p.R2204*	ENST00000257430	NM_000038.5	2204	Cga/Tga					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131911478	131911478	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	63	453	0	ENST00000265335.6:c.223G>T	p.Glu75Ter	p.E75*	ENST00000265335		75	Gaa/Taa					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131915104	131915104	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	67	496	0	ENST00000265335.6:c.461T>C	p.Val154Ala	p.V154A	ENST00000265335		154	gTc/gCc					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131931468	131931468	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	55	413	2	ENST00000265335.6:c.2173C>T	p.Arg725Trp	p.R725W	ENST00000265335		725	Cgg/Tgg					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149495372	149495372	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs146614144		P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	48	523	0	ENST00000261799.4:c.3275C>T	p.Ser1092Leu	p.S1092L	ENST00000261799	NM_002609.3	1092	tCg/tTg					NEWRECORD																																																																									
NPM1	0	MSKCC	GRCh37	5	170815004	170815004	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	67	433	0	ENST00000296930.5:c.52C>A	p.Leu18Ile	p.L18I	ENST00000296930	NM_002520.6	18	Ctt/Att					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176719070	176719070	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	97	628	0	ENST00000439151.2:c.6374G>T	p.Gly2125Val	p.G2125V	ENST00000439151	NM_022455.4	2125	gGg/gTg					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176719098	176719098	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	79	556	0	ENST00000439151.2:c.6402G>T	p.Lys2134Asn	p.K2134N	ENST00000439151	NM_022455.4	2134	aaG/aaT					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180057736	180057736	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	58	632	0	ENST00000261937.6:c.219G>T	p.Lys73Asn	p.K73N	ENST00000261937	NM_182925.4	73	aaG/aaT					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32166818	32166818	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	48	461	0	ENST00000375023.3:c.4420C>T	p.Arg1474Ter	p.R1474*	ENST00000375023	NM_004557.3	1474	Cga/Tga					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32172090	32172090	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	142	898	0	ENST00000375023.3:c.2942G>T	p.Gly981Val	p.G981V	ENST00000375023	NM_004557.3	981	gGa/gTa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117715350	117715350	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			762	67	504	0	ENST00000368508.3:c.1139G>T	p.Arg380Ile	p.R380I	ENST00000368508	NM_002944.2	380	aGa/aTa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117718123	117718123	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	98	641	0	ENST00000368508.3:c.734G>T	p.Arg245Ile	p.R245I	ENST00000368508	NM_002944.2	245	aGa/aTa					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137519317	137519317	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			908	87	626	0	ENST00000367739.4:c.1321G>T	p.Glu441Ter	p.E441*	ENST00000367739	NM_000416.2	441	Gaa/Taa					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150023160	150023160	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	105	814	2	ENST00000253339.5:c.103C>T	p.Arg35Trp	p.R35W	ENST00000253339		35	Cgg/Tgg					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152163810	152163810	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	81	655	0	ENST00000206249.3:c.531A>C	p.Glu177Asp	p.E177D	ENST00000206249	NM_000125.3	177	gaA/gaC					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528907	157528907	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	81	551	0	ENST00000346085.5:c.6632A>G	p.Asn2211Ser	p.N2211S	ENST00000346085	NM_020732.3	2211	aAc/aGc					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162864502	162864502	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	54	477	0	ENST00000366898.1:c.11T>G	p.Phe4Cys	p.F4C	ENST00000366898	NM_004562.2	4	tTt/tGt					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2963988	2963988	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	215	770	0	ENST00000396946.4:c.1819G>A	p.Glu607Lys	p.E607K	ENST00000396946	NM_032415.4	607	Gaa/Aaa					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148504761	148504761	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1033	95	727	2	ENST00000320356.2:c.2233G>A	p.Glu745Lys	p.E745K	ENST00000320356	NM_004456.4	745	Gaa/Aaa					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148526895	148526895	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	64	602	0	ENST00000320356.2:c.409G>T	p.Glu137Ter	p.E137*	ENST00000320356	NM_004456.4	137	Gaa/Taa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878079	151878079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202108375		P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	53	537	0	ENST00000262189.6:c.6866G>A	p.Arg2289His	p.R2289H	ENST00000262189	NM_170606.2	2289	cGt/cAt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151896526	151896526	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	44	347	0	ENST00000262189.6:c.4111G>T	p.Asp1371Tyr	p.D1371Y	ENST00000262189	NM_170606.2	1371	Gat/Tat					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152012244	152012244	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	282	815	0	ENST00000262189.6:c.569G>A	p.Arg190Gln	p.R190Q	ENST00000262189	NM_170606.2	190	cGa/cAa					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5044402	5044402	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	76	610	0	ENST00000381652.3:c.351-1G>T		p.X117_splice	ENST00000381652	NM_004972.3	117						NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5066739	5066739	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	59	593	0	ENST00000381652.3:c.1276C>T	p.Arg426Ter	p.R426*	ENST00000381652	NM_004972.3	426	Cga/Tga					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5077508	5077508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	60	300	1	ENST00000381652.3:c.1920G>T	p.Lys640Asn	p.K640N	ENST00000381652	NM_004972.3	640	aaG/aaT					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98218598	98218598	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	73	599	2	ENST00000331920.6:c.3266C>A	p.Ser1089Tyr	p.S1089Y	ENST00000331920	NM_000264.3	1089	tCt/tAt					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101907093	101907093	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	79	530	0	ENST00000374994.4:c.1053C>A	p.Asp351Glu	p.D351E	ENST00000374994	NM_004612.2	351	gaC/gaA					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43600556	43600556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	82	781	3	ENST00000355710.3:c.782C>T	p.Thr261Ile	p.T261I	ENST00000355710	NM_020975.4	261	aCc/aTc					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43615088	43615088	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	97	758	0	ENST00000355710.3:c.2502C>A	p.Asn834Lys	p.N834K	ENST00000355710	NM_020975.4	834	aaC/aaA					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63845621	63845621	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	67	318	1	ENST00000279873.7:c.1360G>T	p.Glu454Ter	p.E454*	ENST00000279873	NM_032199.2	454	Gaa/Taa					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333960	70333960	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	65	465	1	ENST00000373644.4:c.1865G>T	p.Arg622Ile	p.R622I	ENST00000373644	NM_030625.2	622	aGa/aTa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717650	89717650	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	122	635	0	ENST00000371953.3:c.675T>G	p.Tyr225Ter	p.Y225*	ENST00000371953	NM_000314.4	225	taT/taG					NEWRECORD																																																																									
FGF4	0	MSKCC	GRCh37	11	69588241	69588241	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	97	729	1	ENST00000168712.1:c.457G>A	p.Asp153Asn	p.D153N	ENST00000168712	NM_002007.2	153	Gat/Aat					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94224129	94224129	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	41	311	0	ENST00000323929.3:c.23A>G	p.Asp8Gly	p.D8G	ENST00000323929	NM_005591.3	8	gAt/gGt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100920786	100920786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	162	747	1	ENST00000325455.5:c.2362C>T	p.Arg788Trp	p.R788W	ENST00000325455	NM_001202474.3	788	Cgg/Tgg					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	123	769	4	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108139230	108139230	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	127	726	0	ENST00000278616.4:c.2732C>T	p.Ala911Val	p.A911V	ENST00000278616	NM_000051.3	911	gCt/gTt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108143506	108143506	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1155	94	835	0	ENST00000278616.4:c.3211A>C	p.Asn1071His	p.N1071H	ENST00000278616	NM_000051.3	1071	Aat/Cat					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108160347	108160347	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	50	275	0	ENST00000278616.4:c.4255C>A	p.Leu1419Ile	p.L1419I	ENST00000278616	NM_000051.3	1419	Ctt/Att					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118352742	118352742	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	69	556	0	ENST00000534358.1:c.3947G>T	p.Arg1316Ile	p.R1316I	ENST00000534358	NM_005933.3	1316	aGa/aTa					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18435277	18435277	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	83	574	2	ENST00000266497.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000266497		88	Gaa/Taa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46123842	46123842	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	52	415	0	ENST00000334344.6:c.108A>C	p.Lys36Asn	p.K36N	ENST00000334344	NM_152641.2	36	aaA/aaC					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46211668	46211668	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	51	469	3	ENST00000334344.6:c.634G>A	p.Asp212Asn	p.D212N	ENST00000334344	NM_152641.2	212	Gac/Aac					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133218237	133218237	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			995	79	760	0	ENST00000320574.5:c.5374T>G	p.Phe1792Val	p.F1792V	ENST00000320574	NM_006231.2	1792	Ttc/Gtc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133249857	133249857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	87	466	0	ENST00000320574.5:c.1366G>C	p.Ala456Pro	p.A456P	ENST00000320574	NM_006231.2	456	Gcc/Ccc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28609791	28609791	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146341559		P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	69	550	0	ENST00000241453.7:c.1438G>A	p.Glu480Lys	p.E480K	ENST00000241453	NM_004119.2	480	Gaa/Aaa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29012441	29012441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55974987		P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	113	594	1	ENST00000282397.4:c.430G>A	p.Glu144Lys	p.E144K	ENST00000282397	NM_002019.4	144	Gaa/Aaa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32910860	32910860	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1624	167	1082	2	ENST00000380152.3:c.2368G>T	p.Glu790Ter	p.E790*	ENST00000380152		790	Gaa/Taa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32912750	32912750	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1409	123	987	0	ENST00000380152.3:c.4258G>T	p.Asp1420Tyr	p.D1420Y	ENST00000380152		1420	Gat/Tat					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913632	32913632	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1392	179	1023	0	ENST00000380152.3:c.5140T>G	p.Tyr1714Asp	p.Y1714D	ENST00000380152		1714	Tat/Gat					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32953959	32953959	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	63	470	0	ENST00000380152.3:c.9026A>C	p.Tyr3009Ser	p.Y3009S	ENST00000380152		3009	tAt/tCt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42028617	42028617	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1526	129	1164	2	ENST00000219905.7:c.4155G>T	p.Glu1385Asp	p.E1385D	ENST00000219905	NM_001164273.1	1385	gaG/gaT					NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42058999	42058999	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs755132381		P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1471	141	1015	4	ENST00000219905.7:c.8719G>A	p.Asp2907Asn	p.D2907N	ENST00000219905	NM_001164273.1	2907	Gat/Aat					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88476252	88476252	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	89	579	0	ENST00000360948.2:c.1880A>C	p.Lys627Thr	p.K627T	ENST00000360948	NM_001012338.2	627	aAg/aCg					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99440126	99440126	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	80	539	5	ENST00000268035.6:c.1094G>A	p.Arg365Gln	p.R365Q	ENST00000268035	NM_000875.3	365	cGa/cAa					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14031717	14031717	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	47	381	0	ENST00000311895.7:c.1904+2T>C		p.X635_splice	ENST00000311895	NM_005236.2	635						NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645910	67645910	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	86	702	0	ENST00000264010.4:c.838A>C	p.Asn280His	p.N280H	ENST00000264010	NM_006565.3	280	Aat/Cat					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68842434	68842434	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	100	660	0	ENST00000261769.5:c.495A>C	p.Glu165Asp	p.E165D	ENST00000261769	NM_004360.3	165	gaA/gaC					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72822274	72822274	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1471	119	1139	0	ENST00000268489.5:c.9901G>A	p.Ala3301Thr	p.A3301T	ENST00000268489	NM_006885.3	3301	Gca/Aca					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72827411	72827411	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1607	131	1046	1	ENST00000268489.5:c.9170G>A	p.Gly3057Glu	p.G3057E	ENST00000268489	NM_006885.3	3057	gGa/gAa					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828033	72828033	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1694	187	1147	1	ENST00000268489.5:c.8548G>A	p.Glu2850Lys	p.E2850K	ENST00000268489	NM_006885.3	2850	Gag/Aag					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81953156	81953156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1387	117	930	3	ENST00000359376.3:c.2122G>A	p.Ala708Thr	p.A708T	ENST00000359376	NM_002661.3	708	Gcc/Acc					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89816140	89816140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	92	684	0	ENST00000389301.3:c.3237A>T	p.Lys1079Asn	p.K1079N	ENST00000389301	NM_000135.2	1079	aaA/aaT					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15952253	15952253	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	89	743	1	ENST00000268712.3:c.6442G>A	p.Glu2148Lys	p.E2148K	ENST00000268712	NM_006311.3	2148	Gag/Aag					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15961376	15961376	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	50	534	0	ENST00000268712.3:c.6013G>T	p.Asp2005Tyr	p.D2005Y	ENST00000268712	NM_006311.3	2005	Gat/Tat					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29541513	29541513	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	34	312	0	ENST00000358273.4:c.1437A>C	p.Glu479Asp	p.E479D	ENST00000358273	NM_001042492.2	479	gaA/gaC					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29553583	29553583	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	40	261	0	ENST00000358273.4:c.2132G>A	p.Arg711His	p.R711H	ENST00000358273	NM_001042492.2	711	cGc/cAc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556079	29556079	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			487	62	406	0	ENST00000358273.4:c.2446C>T	p.Arg816Ter	p.R816*	ENST00000358273	NM_001042492.2	816	Cga/Tga					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	116	682	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30322594	30322594	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	43	499	0	ENST00000322652.5:c.1607C>A	p.Thr536Lys	p.T536K	ENST00000322652	NM_015355.2	536	aCa/aAa					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40476865	40476865	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	146	772	0	ENST00000264657.5:c.1465-1G>T		p.X489_splice	ENST00000264657	NM_139276.2	489						NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41244601	41244601	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1043	90	722	0	ENST00000357654.3:c.2947C>T	p.Leu983Phe	p.L983F	ENST00000357654	NM_007294.3	983	Ctt/Ttt					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66519009	66519009	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	112	699	0	ENST00000358598.2:c.290G>A	p.Arg97Gln	p.R97Q	ENST00000358598	NM_212471.2	97	cGa/cAa					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	745986	745986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	48	543	2	ENST00000314574.4:c.536G>A	p.Arg179Gln	p.R179Q	ENST00000314574	NM_005433.3	179	cGa/cAa					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39629541	39629541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	84	623	0	ENST00000262039.4:c.2235C>A	p.His745Gln	p.H745Q	ENST00000262039	NM_002647.2	745	caC/caA					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56390469	56390469	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	105	770	0	ENST00000348428.3:c.1208A>C	p.Asp403Ala	p.D403A	ENST00000348428	NM_006785.3	403	gAc/gCc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2194550	2194550	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1321	114	823	0	ENST00000398665.3:c.625T>G	p.Tyr209Asp	p.Y209D	ENST00000398665	NM_032482.2	209	Tat/Gat					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118948	3118948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	82	773	1	ENST00000078429.4:c.632C>T	p.Ser211Leu	p.S211L	ENST00000078429	NM_002067.2	211	tCg/tTg					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15366207	15366207	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1180	120	899	0	ENST00000263377.2:c.1948G>A	p.Asp650Asn	p.D650N	ENST00000263377	NM_058243.2	650	Gac/Aac					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33792248	33792248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	84	632	0	ENST00000498907.2:c.1073C>T	p.Ala358Val	p.A358V	ENST00000498907	NM_004364.3	358	gCg/gTg					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41743948	41743948	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	97	850	0	ENST00000301178.4:c.883C>T	p.Arg295Trp	p.R295W	ENST00000301178	NM_021913.4	295	Cgg/Tgg					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39725963	39725963	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	38	322	0	ENST00000361337.2:c.834C>A	p.Phe278Leu	p.F278L	ENST00000361337	NM_003286.2	278	ttC/ttA					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57480443	57480443	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	43	328	0	ENST00000371085.3:c.438C>A	p.Phe146Leu	p.F146L	ENST00000371085	NM_000516.4	146	ttC/ttA					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29091838	29091838	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	29	218	0	ENST00000328354.6:c.1119G>T	p.Lys373Asn	p.K373N	ENST00000328354	NM_007194.3	373	aaG/aaT					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30000102	30000102	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	65	698	2	ENST00000338641.4:c.114+1G>A		p.X38_splice	ENST00000338641	NM_000268.3	38						NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20152109	20152109	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	97	830	1	ENST00000379607.5:c.221C>T	p.Ser74Leu	p.S74L	ENST00000379607	NM_001412.3	74	tCg/tTg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039335	47039335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1076	109	867	0	ENST00000329236.7:c.727C>A	p.Leu243Met	p.L243M	ENST00000329236	NM_001204466.1	243	Ctg/Atg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70354222	70354222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	112	766	0	ENST00000374080.3:c.4633G>A	p.Asp1545Asn	p.D1545N	ENST00000374080		1545	Gac/Aac					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937236	76937236	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	156	855	0	ENST00000373344.5:c.3512G>T	p.Arg1171Ile	p.R1171I	ENST00000373344	NM_000489.3	1171	aGa/aTa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937884	76937884	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	132	704	0	ENST00000373344.5:c.2864A>C	p.Lys955Thr	p.K955T	ENST00000373344	NM_000489.3	955	aAa/aCa					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123217386	123217386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	75	679	0	ENST00000218089.9:c.3040G>T	p.Asp1014Tyr	p.D1014Y	ENST00000218089	NM_001042749.1	1014	Gac/Tac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	565	521	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3790455	3790455	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1487	179	694	1	ENST00000262367.5:c.4078C>T	p.Arg1360Ter	p.R1360*	ENST00000262367	NM_004380.2	1360	Cga/Tga					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36259192	36259192	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	414	605	1	ENST00000300305.3:c.299C>T	p.Ser100Phe	p.S100F	ENST00000300305		100	tCc/tTc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89725214	89725214	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			32	12	17	0	ENST00000371953.3:c.1197A>T	p.Gln399His	p.Q399H	ENST00000371953	NM_000314.4	399	caA/caT					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108163522	108163522	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0011136-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	126	457	0	ENST00000278616.4:c.4611+2T>C		p.X1537_splice	ENST00000278616	NM_000051.3	1537						NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143129600	143129600	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	137	422	0	ENST00000262992.4:c.1050G>C	p.Gln350His	p.Q350H	ENST00000262992	NM_001101669.1	350	caG/caC					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434134	49434134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	84	499	0	ENST00000301067.7:c.7419G>T	p.Gln2473His	p.Q2473H	ENST00000301067	NM_003482.3	2473	caG/caT					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9862796	9862796	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	101	585	0	ENST00000330684.3:c.2507T>A	p.Ile836Asn	p.I836N	ENST00000330684	NM_001134407.1	836	aTc/aAc					NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22160199	22160199	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	93	597	0	ENST00000215832.6:c.432C>A	p.Asn144Lys	p.N144K	ENST00000215832	NM_002745.4	144	aaC/aaA					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39795407	39795407	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012290-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	146	693	0	ENST00000288319.7:c.313G>A	p.Gly105Ser	p.G105S	ENST00000288319	NM_182918.3	105	Ggc/Agc					NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014854-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	160	520	1	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178919150	178919150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010327-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	112	354	0	ENST00000263967.3:c.635A>G	p.Asn212Ser	p.N212S	ENST00000263967	NM_006218.2	212	aAc/aGc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0011234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	119	371	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578184	7578208	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTCATAGGGCACCACCACACTAT	GGCTCATAGGGCACCACCACACTAT	-			P-0011234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	236	561	0	ENST00000269305.4:c.641_665del	p.His214ArgfsTer25	p.H214Rfs*25	ENST00000269305	NM_001126112.2	214	cATAGTGTGGTGGTGCCCTATGAGCCg/cg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27088663	27088663	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	143	683	1	ENST00000324856.7:c.2272C>T	p.Gln758Ter	p.Q758*	ENST00000324856	NM_006015.4	758	Cag/Tag					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266828	198266828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	153	537	1	ENST00000335508.6:c.2104C>T	p.Arg702Trp	p.R702W	ENST00000335508	NM_012433.2	702	Cgg/Tgg					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9770586	9770586	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	218	703	0	ENST00000377346.4:c.73C>G	p.Leu25Val	p.L25V	ENST00000377346	NM_005026.3	25	Ctg/Gtg					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118166001	118166001	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	55	412	0	ENST00000369448.3:c.511G>C	p.Asp171His	p.D171H	ENST00000369448	NM_017709.3	171	Gac/Cac					NEWRECORD																																																																									
CXCR4	0	MSKCC	GRCh37	2	136873297	136873297	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	277	1000	0	ENST00000241393.3:c.201G>C	p.Lys67Asn	p.K67N	ENST00000241393	NM_003467.2	67	aaG/aaC					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670597	134670597	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	238	812	2	ENST00000398015.3:c.508C>T	p.Arg170Trp	p.R170W	ENST00000398015	NM_004441.4	170	Cgg/Tgg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134911508	134911508	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201816783		P-0012107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	105	482	1	ENST00000398015.3:c.1973C>T	p.Ser658Leu	p.S658L	ENST00000398015	NM_004441.4	658	tCg/tTg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2951847	2951847	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	222	657	0	ENST00000396946.4:c.3103G>T	p.Glu1035Ter	p.E1035*	ENST00000396946	NM_032415.4	1035	Gaa/Taa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116397567	116397567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	237	697	0	ENST00000397752.3:c.1939A>G	p.Thr647Ala	p.T647A	ENST00000397752	NM_000245.2	647	Aca/Gca					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116415117	116415117	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	381	571	0	ENST00000397752.3:c.3211A>G	p.Ile1071Val	p.I1071V	ENST00000397752	NM_000245.2	1071	Att/Gtt					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95566251	95566251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	159	399	0	ENST00000343455.3:c.4072C>T	p.Arg1358Cys	p.R1358C	ENST00000343455	NM_177438.2	1358	Cgc/Tgc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772311	68772311	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	154	390	0	ENST00000261769.5:c.160A>T	p.Arg54Ter	p.R54*	ENST00000261769	NM_004360.3	54	Aga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	371	531	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17349116	17349116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	72	497	0	ENST00000375499.3:c.752G>A	p.Arg251Lys	p.R251K	ENST00000375499	NM_003000.2	251	aGg/aAg					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40366767	40366767	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4756	351	297	0	ENST00000397332.2:c.430G>A	p.Ala144Thr	p.A144T	ENST00000397332	NM_001033082.2	144	Gct/Act					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142226946	142226946	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	227	304	0	ENST00000350721.4:c.4858A>T	p.Thr1620Ser	p.T1620S	ENST00000350721	NM_001184.3	1620	Act/Tct					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21549052	21549052	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	205	247	0	ENST00000382592.4:c.3224A>T	p.Asp1075Val	p.D1075V	ENST00000382592	NM_014572.2	1075	gAt/gTt					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28891719	28891719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	347	480	1	ENST00000282397.4:c.3302C>A	p.Pro1101Gln	p.P1101Q	ENST00000282397	NM_002019.4	1101	cCa/cAa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38064141	38064141	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	165	580	0	ENST00000250448.2:c.37A>G	p.Ser13Gly	p.S13G	ENST00000250448	NM_004496.3	13	Agc/Ggc					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7217247	7217247	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	434	689	0	ENST00000380728.2:c.458T>G	p.Met153Arg	p.M153R	ENST00000380728		153	aTg/aGg					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15375349	15375349	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	315	489	0	ENST00000263377.2:c.1078A>G	p.Ile360Val	p.I360V	ENST00000263377	NM_058243.2	360	Atc/Gtc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49427973	49427973	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	144	433	0	ENST00000301067.7:c.10617del	p.Lys3540ArgfsTer118	p.K3540Rfs*118	ENST00000301067	NM_003482.3	3539	cgG/cg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441270	52441273	+	frameshift_variant	Frame_Shift_Del	DEL	GCCT	GCCT	-			P-0012771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	52	390	0	ENST00000460680.1:c.497_500del	p.Glu166GlyfsTer20	p.E166Gfs*20	ENST00000460680	NM_004656.3	166	gAGGCg/gg					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118943	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0012771-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	56	574	0	ENST00000078429.4:c.626_627delinsTT	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAG/cTT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	85	568	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	40	347	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	57	432	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162394380	162394380	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	89	790	0	ENST00000366898.1:c.688G>A	p.Ala230Thr	p.A230T	ENST00000366898	NM_004562.2	230	Gca/Aca					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148506218	148506218	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010425-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	74	515	0	ENST00000320356.2:c.2140G>A	p.Gly714Ser	p.G714S	ENST00000320356	NM_004456.4	714	Ggt/Agt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692884	89692884	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			462	92	509	2	ENST00000371953.3:c.368A>G	p.His123Arg	p.H123R	ENST00000371953	NM_000314.4	123	cAc/cGc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89693005	89693010	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAAGGT	AAAGGT	-			P-0010419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			548	43	541	0	ENST00000371953.3:c.491_492+4del		p.X164_splice	ENST00000371953	NM_000314.4	164						NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063372	67063372	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	123	670	0	ENST00000412916.2:c.62T>G	p.Leu21Arg	p.L21R	ENST00000412916		21	cTg/cGg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68862139	68862139	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010419-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			458	148	716	0	ENST00000261769.5:c.2231del	p.Pro744GlnfsTer26	p.P744Qfs*26	ENST00000261769	NM_004360.3	743	Ccc/cc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602907	10602907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	70	800	0	ENST00000171111.5:c.671C>T	p.Ser224Phe	p.S224F	ENST00000171111	NM_203500.1	224	tCc/tTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578406	7578406	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	48	583	0	ENST00000269305.4:c.524del	p.Arg175ProfsTer72	p.R175Pfs*72	ENST00000269305	NM_001126112.2	175	cGc/cc					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851661	134851661	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	82	702	0	ENST00000398015.3:c.1067A>G	p.Tyr356Cys	p.Y356C	ENST00000398015	NM_004441.4	356	tAc/tGc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115828	8115828	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1306	89	1175	0	ENST00000346208.3:c.1174A>T	p.Asn392Tyr	p.N392Y	ENST00000346208		392	Aac/Tac					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99434723	99434723	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			981	70	832	0	ENST00000268035.6:c.810G>T	p.Arg270Ser	p.R270S	ENST00000268035	NM_000875.3	270	agG/agT					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602853	10602853	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	70	716	1	ENST00000171111.5:c.725A>T	p.Glu242Val	p.E242V	ENST00000171111	NM_203500.1	242	gAg/gTg					NEWRECORD																																																																									
DNAJB1	0	MSKCC	GRCh37	19	14627813	14627813	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1578	95	1224	0	ENST00000254322.2:c.257A>G	p.Asn86Ser	p.N86S	ENST00000254322	NM_006145.1	86	aAt/aGt					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546619	9546619	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	91	999	0	ENST00000353224.5:c.1403A>T	p.Glu468Val	p.E468V	ENST00000353224	NM_177990.2	468	gAg/gTg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66937385	66937385	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1224	66	1121	2	ENST00000374690.3:c.2239G>T	p.Val747Leu	p.V747L	ENST00000374690	NM_000044.3	747	Gtg/Ttg					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258748	115258748	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	393	599	0	ENST00000369535.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000369535	NM_002524.4	12	Ggt/Tgt					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15289930	15289930	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	398	558	0	ENST00000263388.2:c.3624G>T	p.Glu1208Asp	p.E1208D	ENST00000263388	NM_000435.2	1208	gaG/gaT					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29653254	29653254	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	173	305	0	ENST00000358273.4:c.5253del	p.Val1753PhefsTer12	p.V1753Ffs*12	ENST00000358273	NM_001042492.2	1751	aCc/ac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	316	895	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576887	7576894	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTTTGG	TTCTTTGG	-			P-0010991-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	998	614	0	ENST00000269305.4:c.952_959del	p.Pro318GlufsTer16	p.P318Efs*16	ENST00000269305	NM_001126112.2	318	CCAAAGAAg/g					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36882048	36882055	+	frameshift_variant	Frame_Shift_Del	DEL	GCGGGGGG	GCGGGGGG	-			P-0010991-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	551	681	0	ENST00000358127.4:c.958_965del	p.Pro320TrpfsTer18	p.P320Wfs*18	ENST00000358127	NM_001280556.1	320	CCCCCCGCt/t					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	103	223	0	ENST00000269305.4:c.517G>A	p.Val173Met	p.V173M	ENST00000269305	NM_001126112.2	173	Gtg/Atg					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43612087	43612087	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010319-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	265	834	1	ENST00000355710.3:c.2192G>T	p.Gly731Val	p.G731V	ENST00000355710	NM_020975.4	731	gGa/gTa					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212285228	212285228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	181	560	1	ENST00000342788.4:c.3073C>T	p.Pro1025Ser	p.P1025S	ENST00000342788	NM_005235.2	1025	Cct/Tct					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15288499	15288499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	103	247	0	ENST00000263388.2:c.4240G>T	p.Gly1414Cys	p.G1414C	ENST00000263388	NM_000435.2	1414	Ggc/Tgc					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36932342	36932342	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1653	395	1251	2	ENST00000361632.4:c.2127G>A	p.Trp709Ter	p.W709*	ENST00000361632		709	tgG/tgA					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49432396	49432396	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	233	708	3	ENST00000301067.7:c.8743C>T	p.Arg2915Ter	p.R2915*	ENST00000301067	NM_003482.3	2915	Cga/Tga					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23625413	23625413	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	146	459	0	ENST00000261584.4:c.3114-1G>A		p.X1038_splice	ENST00000261584	NM_024675.3	1038						NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72821358	72821358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	259	725	0	ENST00000268489.5:c.10817C>T	p.Ser3606Phe	p.S3606F	ENST00000268489	NM_006885.3	3606	tCc/tTc					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89347177	89347177	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	297	901	0	ENST00000301030.4:c.5773C>T	p.Pro1925Ser	p.P1925S	ENST00000301030	NM_001256183.1	1925	Ccc/Tcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576851	7576851	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	626	551	0	ENST00000269305.4:c.993+2T>C		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022565	31022565	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			901	225	601	0	ENST00000375687.4:c.2050C>T	p.Pro684Ser	p.P684S	ENST00000375687	NM_015338.5	684	Cct/Tct					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944614	40944614	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	84	253	0	ENST00000373198.4:c.1888G>A	p.Glu630Lys	p.E630K	ENST00000373198	NM_133170.3	630	Gag/Aag					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44513267	44513267	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	510	556	0	ENST00000291552.4:c.668G>A	p.Gly223Glu	p.G223E	ENST00000291552	NM_006758.2	223	gGa/gAa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142268332	142268332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	213	225	0	ENST00000350721.4:c.3160C>T	p.His1054Tyr	p.H1054Y	ENST00000350721	NM_001184.3	1054	Cat/Tat					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55602728	55602728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	150	538	0	ENST00000288135.5:c.2549G>A	p.Ser850Asn	p.S850N	ENST00000288135	NM_000222.2	850	aGt/aAt					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143081594	143081594	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	254	657	0	ENST00000262992.4:c.1480G>A	p.Glu494Lys	p.E494K	ENST00000262992	NM_001101669.1	494	Gag/Aag					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67588991	67588991	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			395	135	366	0	ENST00000274335.5:c.1082C>T	p.Ser361Phe	p.S361F	ENST00000274335		361	tCt/tTt					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149510166	149510166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	541	653	1	ENST00000261799.4:c.1303C>T	p.Arg435Cys	p.R435C	ENST00000261799	NM_002609.3	435	Cgc/Tgc					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675970	30675970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	752	826	1	ENST00000376406.3:c.2386C>T	p.His796Tyr	p.H796Y	ENST00000376406	NM_014641.2	796	Cac/Tac					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30682953	30682953	+	splice_region_variant,5_prime_UTR_variant	Splice_Region	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	500	566	0	ENST00000376406.3:c.-1C>T		p.X1_splice	ENST00000376406	NM_014641.2	1						NEWRECORD																																																																									
PIM1	0	MSKCC	GRCh37	6	37138629	37138629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	438	599	0	ENST00000373509.5:c.163G>A	p.Gly55Ser	p.G55S	ENST00000373509	NM_002648.3	55	Ggc/Agc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117700235	117700235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	446	617	0	ENST00000368508.3:c.2584C>T	p.Leu862Phe	p.L862F	ENST00000368508	NM_002944.2	862	Ctt/Ttt					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509873	106509873	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			272	660	747	0	ENST00000359195.3:c.1867G>A	p.Asp623Asn	p.D623N	ENST00000359195	NM_002649.2	623	Gat/Aat					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5069199	5069199	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	151	385	0	ENST00000381652.3:c.1504A>T	p.Lys502Ter	p.K502*	ENST00000381652	NM_004972.3	502	Aag/Tag					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339283	70339283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	566	629	0	ENST00000374080.3:c.160G>A	p.Asp54Asn	p.D54N	ENST00000374080		54	Gat/Aat					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70350003	70350003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014169-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	493	582	0	ENST00000374080.3:c.3986G>A	p.Arg1329Gln	p.R1329Q	ENST00000374080		1329	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1267	100	540	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720833	89720836	+	frameshift_variant	Frame_Shift_Del	DEL	AAAT	AAAT	-			P-0011502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	27	181	0	ENST00000371953.3:c.987_990delTAAA	p.Asn329LysfsTer14	p.N329Kfs*14	ENST00000371953	NM_000314.4	328	gcAAAT/gc					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028640	12028647	+	frameshift_variant	Frame_Shift_Del	DEL	ACAAGGAT	ACAAGGAT	-			P-0011502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1177	75	444	0	ENST00000353533.5:c.844_851del	p.Gln282Ter	p.Q282*	ENST00000353533	NM_003010.3	281	cgACAAGGATat/cgat					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2122982	2122982	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0013555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	58	881	0	ENST00000219476.3:c.2353C>T	p.Gln785Ter	p.Q785*	ENST00000219476	NM_000548.3	785	Cag/Tag					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2133694	2133694	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0013555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	43	883	1	ENST00000219476.3:c.3884-2A>G		p.X1295_splice	ENST00000219476	NM_000548.3	1295						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	40	532	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	191	433	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67479810	67479810	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	66	544	0	ENST00000327367.4:c.1117C>T	p.Arg373Cys	p.R373C	ENST00000327367	NM_005902.3	373	Cgc/Tgc					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67473723	67473723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	44	499	0	ENST00000327367.4:c.803G>A	p.Arg268His	p.R268H	ENST00000327367	NM_005902.3	268	cGc/cAc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	134	872	2	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164949	47164949	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	60	308	0	ENST00000409792.3:c.1177C>T	p.Arg393Ter	p.R393*	ENST00000409792	NM_014159.6	393	Cga/Tga					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67569823	67569823	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	36	295	0	ENST00000274335.5:c.484C>T	p.Arg162Ter	p.R162*	ENST00000274335		162	Cga/Tga					NEWRECORD																																																																									
SDHD	0	MSKCC	GRCh37	11	111958608	111958608	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200671534		P-0013449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			198	52	286	0	ENST00000375549.3:c.80G>A	p.Arg27Lys	p.R27K	ENST00000375549	NM_003002.3	27	aGa/aAa					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591263	67591264	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	74	370	1	ENST00000274335.5:c.1761_1762del	p.Gly588CysfsTer13	p.G588Cfs*13	ENST00000274335		587	aaAGgt/aagt					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119807	70119808	+	stop_gained	Nonsense_Mutation	DNP	TC	TC	AA			P-0013449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	56	521	0	ENST00000245479.2:c.809_810delinsAA	p.Phe270Ter	p.F270*	ENST00000245479	NM_000346.3	270	tTC/tAA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	39	500	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	43	651	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	36	673	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11317082	11317082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	61	685	2	ENST00000361445.4:c.412G>T	p.Asp138Tyr	p.D138Y	ENST00000361445	NM_004958.3	138	Gac/Tac					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32178657	32178657	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	46	548	0	ENST00000375023.3:c.2737T>A	p.Ser913Thr	p.S913T	ENST00000375023	NM_004557.3	913	Tcc/Acc					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43622151	43622151	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	56	646	2	ENST00000355710.3:c.3168G>T	p.Trp1056Cys	p.W1056C	ENST00000355710	NM_020975.4	1056	tgG/tgT					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45871934	45871934	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	65	714	1	ENST00000391945.4:c.314T>C	p.Leu105Pro	p.L105P	ENST00000391945	NM_000400.3	105	cTg/cCg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40735541	40735541	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	37	441	0	ENST00000373198.4:c.3332G>T	p.Gly1111Val	p.G1111V	ENST00000373198	NM_133170.3	1111	gGc/gTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40980862	40980862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012746-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	42	534	0	ENST00000373198.4:c.1624G>T	p.Val542Leu	p.V542L	ENST00000373198	NM_133170.3	542	Gtg/Ttg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	193	470	1	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47688735	47688735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	91	398	1	ENST00000347630.2:c.565G>A	p.Glu189Lys	p.E189K	ENST00000347630	NM_001007230.1	189	Gag/Aag					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16256501	16256501	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	50	409	1	ENST00000375759.3:c.3766G>A	p.Glu1256Lys	p.E1256K	ENST00000375759	NM_015001.2	1256	Gaa/Aaa					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156849835	156849835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	158	424	0	ENST00000524377.1:c.2091G>C	p.Glu697Asp	p.E697D	ENST00000524377	NM_002529.3	697	gaG/gaC					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25464454	25464454	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	141	443	0	ENST00000264709.3:c.2059G>T	p.Val687Phe	p.V687F	ENST00000264709	NM_175629.2	687	Gtc/Ttc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356385	66356385	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	34	398	0	ENST00000273854.3:c.1112C>G	p.Thr371Ser	p.T371S	ENST00000273854	NM_004439.5	371	aCt/aGt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187532796	187532796	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	44	516	0	ENST00000441802.2:c.9597G>C	p.Leu3199Phe	p.L3199F	ENST00000441802	NM_005245.3	3199	ttG/ttC					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120647	94120647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	151	751	0	ENST00000369303.4:c.404G>C	p.Gly135Ala	p.G135A	ENST00000369303	NM_004440.3	135	gGc/gCc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341917	8341917	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	38	417	0	ENST00000356435.5:c.4723C>A	p.His1575Asn	p.H1575N	ENST00000356435		1575	Cat/Aat					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8389245	8389245	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			764	61	498	0	ENST00000356435.5:c.4373A>G	p.Glu1458Gly	p.E1458G	ENST00000356435		1458	gAa/gGa					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133755519	133755519	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs62580066		P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	139	469	0	ENST00000318560.5:c.1488G>T	p.Met496Ile	p.M496I	ENST00000318560	NM_005157.4	496	atG/atT					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43609007	43609007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	68	616	0	ENST00000355710.3:c.1763G>A	p.Gly588Asp	p.G588D	ENST00000355710	NM_020975.4	588	gGc/gAc					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32456485	32456485	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	55	110	1	ENST00000332351.3:c.407C>T	p.Pro136Leu	p.P136L	ENST00000332351	NM_024426.4	136	cCt/cTt					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102098231	102098231	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	42	428	0	ENST00000282441.5:c.1195G>C	p.Asp399His	p.D399H	ENST00000282441	NM_001130145.2	399	Gac/Cac					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29559764	29559764	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	77	422	0	ENST00000358273.4:c.3361G>T	p.Glu1121Ter	p.E1121*	ENST00000358273	NM_001042492.2	1121	Gaa/Taa					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39617679	39617679	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	101	405	1	ENST00000262039.4:c.1863G>T	p.Leu621Phe	p.L621F	ENST00000262039	NM_002647.2	621	ttG/ttT					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24175811	24175811	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	37	447	0	ENST00000263121.7:c.1039G>C	p.Asp347His	p.D347H	ENST00000263121	NM_003073.3	347	Gac/Cac					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44966723	44966723	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	98	303	0	ENST00000377967.4:c.3947A>T	p.Glu1316Val	p.E1316V	ENST00000377967	NM_021140.2	1316	gAg/gTg					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53240997	53240997	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			378	142	320	0	ENST00000375401.3:c.1214A>C	p.Lys405Thr	p.K405T	ENST00000375401	NM_004187.3	405	aAa/aCa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573508	48573539	+	frameshift_variant	Frame_Shift_Del	DEL	AGAGTGAAACATTTGCAAAAAGAGCAATTGAA	AGAGTGAAACATTTGCAAAAAGAGCAATTGAA	-			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	71	378	0	ENST00000342988.3:c.94_125del	p.Ser32PhefsTer11	p.S32Ffs*11	ENST00000342988	NM_005359.5	31	gAGAGTGAAACATTTGCAAAAAGAGCAATTGAA/g					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188829	32188829	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012273-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	43	433	0	ENST00000375023.3:c.725del	p.Gly242AlafsTer10	p.G242Afs*10	ENST00000375023	NM_004557.3	242	gGc/gc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	37	313	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1222983	1222983	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			148	50	218	1	ENST00000326873.7:c.921-1G>T		p.X307_splice	ENST00000326873	NM_000455.4	307						NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65305390	65305390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	43	539	0	ENST00000342505.4:c.2738A>T	p.Glu913Val	p.E913V	ENST00000342505	NM_002227.2	913	gAg/gTg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711968	89711968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	105	210	0	ENST00000371953.3:c.586C>T	p.His196Tyr	p.H196Y	ENST00000371953	NM_000314.4	196	Cac/Tac					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25469922	25469922	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	67	282	0	ENST00000264709.3:c.1120C>T	p.Gln374Ter	p.Q374*	ENST00000264709	NM_175629.2	374	Cag/Tag					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189587119	189587119	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	52	353	1	ENST00000264731.3:c.1136G>T	p.Arg379Leu	p.R379L	ENST00000264731	NM_003722.4	379	cGt/cTt					NEWRECORD																																																																									
PIM1	0	MSKCC	GRCh37	6	37140934	37140934	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	110	401	0	ENST00000373509.5:c.770del	p.Gln257ArgfsTer17	p.Q257Rfs*17	ENST00000373509	NM_002648.3	257	cAg/cg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878215	151878215	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	28	362	0	ENST00000262189.6:c.6730A>T	p.Met2244Leu	p.M2244L	ENST00000262189	NM_170606.2	2244	Atg/Ttg					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23540179	23540179	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013696-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	16	51	0	ENST00000380871.4:c.224A>G	p.Gln75Arg	p.Q75R	ENST00000380871	NM_006167.3	75	cAg/cGg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1235	579	548	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1028	381	630	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55221722	55221722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1215	248	410	1	ENST00000275493.2:c.766G>T	p.Asp256Tyr	p.D256Y	ENST00000275493	NM_005228.3	256	Gac/Tac					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58145050	58145050	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1069	57	546	0	ENST00000257904.6:c.294G>C	p.Gln98His	p.Q98H	ENST00000257904	NM_000075.3	98	caG/caC					NEWRECORD																																																																									
TP53BP1	0	MSKCC	GRCh37	15	43769886	43769886	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1042	59	586	0	ENST00000382044.4:c.860A>G	p.Gln287Arg	p.Q287R	ENST00000382044	NM_001141980.1	287	cAa/cGa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2976696	2976696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014526-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	214	450	0	ENST00000396946.4:c.1316C>A	p.Ser439Tyr	p.S439Y	ENST00000396946	NM_032415.4	439	tCc/tAc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	11	165	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	36	300	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15276723	15276723	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	25	470	0	ENST00000263388.2:c.5542C>T	p.Arg1848Cys	p.R1848C	ENST00000263388	NM_000435.2	1848	Cgt/Tgt					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114710672	114710672	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs184454375		P-0010966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	48	596	0	ENST00000543371.1:c.157G>A	p.Glu53Lys	p.E53K	ENST00000543371	NM_001198531.1	53	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578205	7578205	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	818	687	1	ENST00000269305.4:c.644G>T	p.Ser215Ile	p.S215I	ENST00000269305	NM_001126112.2	215	aGt/aTt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176171	112176171	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	17	550	0	ENST00000257430.4:c.4880A>C	p.Gln1627Pro	p.Q1627P	ENST00000257430	NM_000038.5	1627	cAa/cCa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176309	112176309	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	40	396	0	ENST00000257430.4:c.5018A>G	p.Glu1673Gly	p.E1673G	ENST00000257430	NM_000038.5	1673	gAa/gGa					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123239529	123239529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	331	946	0	ENST00000358487.5:c.2308T>G	p.Leu770Val	p.L770V	ENST00000358487	NM_000141.4	770	Ttg/Gtg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108206575	108206575	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138526014		P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	314	419	1	ENST00000278616.4:c.8155C>T	p.Arg2719Cys	p.R2719C	ENST00000278616	NM_000051.3	2719	Cgt/Tgt					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2138243	2138243	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	445	550	0	ENST00000219476.3:c.5176C>A	p.His1726Asn	p.H1726N	ENST00000219476	NM_000548.3	1726	Cat/Aat					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176306	112176317	+	inframe_deletion	In_Frame_Del	DEL	GAGAAGGAGTTA	GAGAAGGAGTTA	-			P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	349	404	0	ENST00000257430.4:c.5018_5029del	p.Glu1673_Arg1676del	p.E1673_R1676del	ENST00000257430	NM_000038.5	1672	gGAGAAGGAGTTAga/gga					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49426628	49426645	+	inframe_deletion	In_Frame_Del	DEL	GCTGTTGCTGCTGTTGAA	GCTGTTGCTGCTGTTGAA	-			P-0010238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	95	411	0	ENST00000301067.7:c.11843_11860del	p.Leu3948_Gln3953del	p.L3948_Q3953del	ENST00000301067	NM_003482.3	3948	cTTCAACAGCAGCAACAGCag/cag					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33289151	33289151	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	316	340	0	ENST00000374542.5:c.401T>C	p.Leu134Pro	p.L134P	ENST00000374542	NM_001141970.1	134	cTc/cCc					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106554919	106554919	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	26	299	0	ENST00000369096.4:c.2036G>A	p.Arg679His	p.R679H	ENST00000369096	NM_001198.3	679	cGt/cAt					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64574482	64574482	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0011464-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	221	337	0	ENST00000337652.1:c.927+1G>A		p.X309_splice	ENST00000337652	NM_130803.2	309						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	151	524	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0012827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	140	538	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678504	88678504	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012827-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	162	545	0	ENST00000360948.2:c.1032G>T	p.Glu344Asp	p.E344D	ENST00000360948	NM_001012338.2	344	gaG/gaT					NEWRECORD																																																																									
HIST1H1C	3006	MSKCC	GRCh37	6	26056425	26056427	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-	rs774779034		P-0014667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	62	246	0	ENST00000343677.2:c.230_232del	p.Asn77del	p.N77del	ENST00000343677	NM_005319.3	77	aACAgc/agc					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36206861	36206861	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			466	25	476	2	ENST00000300305.3:c.651del	p.Ser218AlafsTer19	p.S218Afs*19	ENST00000300305		217	ggG/gg					NEWRECORD																																																																									
CDC42	0	MSKCC	GRCh37	1	22417964	22417964	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014667-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			153	39	160	0	ENST00000344548.3:c.530T>A	p.Leu177Gln	p.L177Q	ENST00000344548	NM_001039802.1	177	cTg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			381	334	705	3	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			125	162	230	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936393		P-0014897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	12	346	0	ENST00000342988.3:c.1157G>A	p.Gly386Asp	p.G386D	ENST00000342988	NM_005359.5	386	gGt/gAt					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	11998898	11998898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			146	86	254	0	ENST00000353533.5:c.400C>T	p.Arg134Trp	p.R134W	ENST00000353533	NM_003010.3	134	Cgg/Tgg					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625252	69625252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	339	849	1	ENST00000334134.2:c.541C>T	p.Arg181Cys	p.R181C	ENST00000334134	NM_005247.2	181	Cgc/Tgc					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37081785	37081785	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014897-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	81	378	0	ENST00000231790.2:c.1667G>A	p.Ser556Asn	p.S556N	ENST00000231790	NM_000249.3	556	aGt/aAt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039164	49039164	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			27	135	471	1	ENST00000267163.4:c.2242G>T	p.Glu748Ter	p.E748*	ENST00000267163	NM_000321.2	748	Gag/Tag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720852	89720852	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			22	68	250	0	ENST00000371953.3:c.1003C>T	p.Arg335Ter	p.R335*	ENST00000371953	NM_000314.4	335	Cga/Tga					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023908	27023923	+	frameshift_variant	Frame_Shift_Del	DEL	GGCTGCGGCGGCGGCA	GGCTGCGGCGGCGGCA	-			P-0014088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			70	127	91	0	ENST00000324856.7:c.1015_1030del	p.Ala339LeufsTer19	p.A339Lfs*19	ENST00000324856	NM_006015.4	338	ggGGCTGCGGCGGCGGCA/gg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142222288	142222288	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	141	328	0	ENST00000350721.4:c.5204A>G	p.His1735Arg	p.H1735R	ENST00000350721	NM_001184.3	1735	cAt/cGt					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32170291	32170291	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	239	519	0	ENST00000375023.3:c.3317C>G	p.Pro1106Arg	p.P1106R	ENST00000375023	NM_004557.3	1106	cCt/cGt					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97934348	97934348	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	124	586	0	ENST00000289081.3:c.427A>G	p.Ile143Val	p.I143V	ENST00000289081	NM_000136.2	143	Ata/Gta					NEWRECORD																																																																									
INSRR	0	MSKCC	GRCh37	1	156811904	156811904	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	126	519	0	ENST00000368195.3:c.3397G>A	p.Asp1133Asn	p.D1133N	ENST00000368195	NM_014215.2	1133	Gac/Aac					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142268419	142268419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	80	322	0	ENST00000350721.4:c.3073C>T	p.Arg1025Cys	p.R1025C	ENST00000350721	NM_001184.3	1025	Cgt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	129	390	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0012968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	57	332	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PIM1	0	MSKCC	GRCh37	6	37141862	37141862	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	127	284	0	ENST00000373509.5:c.937A>G	p.Lys313Glu	p.K313E	ENST00000373509	NM_002648.3	313	Aaa/Gaa					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117715360	117715360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	82	401	1	ENST00000368508.3:c.1129C>T	p.Leu377Phe	p.L377F	ENST00000368508	NM_002944.2	377	Ctt/Ttt					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391190	139391190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	82	317	0	ENST00000277541.6:c.7001C>T	p.Pro2334Leu	p.P2334L	ENST00000277541	NM_017617.3	2334	cCc/cTc					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26959380	26959380	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	140	413	0	ENST00000381527.3:c.547C>A	p.Pro183Thr	p.P183T	ENST00000381527	NM_001260.1	183	Cct/Act					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3801803	3801803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	101	385	0	ENST00000262367.5:c.3703C>T	p.His1235Tyr	p.H1235Y	ENST00000262367	NM_004380.2	1235	Cat/Tat					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916259	9916259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	106	493	0	ENST00000330684.3:c.2030C>T	p.Ser677Phe	p.S677F	ENST00000330684	NM_001134407.1	677	tCc/tTc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140477837	140477851	+	inframe_deletion	In_Frame_Del	DEL	TAGGTGCTGTCACAT	TAGGTGCTGTCACAT	-			P-0012968-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	364	573	0	ENST00000288602.6:c.1457_1471del	p.Asn486_Pro490del	p.N486_P490del	ENST00000288602	NM_004333.4	486	aATGTGACAGCACCTAca/aca					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0013717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	22	549	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692980	89692980	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013717-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	15	265	0	ENST00000371953.3:c.464A>G	p.Tyr155Cys	p.Y155C	ENST00000371953	NM_000314.4	155	tAt/tGt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105685	27105685	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0006382-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			211	255	861	0	ENST00000324856.7:c.5296G>T	p.Glu1766Ter	p.E1766*	ENST00000324856	NM_006015.4	1766	Gaa/Taa					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287893	33287893	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006382-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			284	302	993	1	ENST00000374542.5:c.1360G>T	p.Glu454Ter	p.E454*	ENST00000374542	NM_001141970.1	454	Gaa/Taa					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33288804	33288804	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006382-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			169	190	486	0	ENST00000374542.5:c.748G>T	p.Gly250Cys	p.G250C	ENST00000374542	NM_001141970.1	250	Ggc/Tgc					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533503	533503	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006382-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			291	305	1102	0	ENST00000311189.7:c.400G>T	p.Ala134Ser	p.A134S	ENST00000311189		134	Gcc/Tcc					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64575044	64575044	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006382-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			231	240	700	2	ENST00000337652.1:c.778G>T	p.Glu260Ter	p.E260*	ENST00000337652	NM_130803.2	260	Gag/Tag					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40741239	40741239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006382-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			551	278	903	0	ENST00000392038.2:c.1194C>A	p.Ser398Arg	p.S398R	ENST00000392038	NM_001626.4	398	agC/agA					NEWRECORD																																																																									
CXCR4	0	MSKCC	GRCh37	2	136873241	136873241	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0006382-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			345	351	1362	0	ENST00000241393.3:c.257T>A	p.Leu86His	p.L86H	ENST00000241393	NM_003467.2	86	cTc/cAc					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176520485	176520485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006382-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			486	258	904	0	ENST00000292408.4:c.1330G>T	p.Ala444Ser	p.A444S	ENST00000292408	NM_213647.1	444	Gcc/Tcc					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20481578	20481578	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006382-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			266	281	970	0	ENST00000346618.3:c.647G>T	p.Arg216Ile	p.R216I	ENST00000346618	NM_001949.4	216	aGa/aTa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945102	151945102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006382-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			254	32	326	0	ENST00000262189.6:c.2417C>A	p.Ser806Tyr	p.S806Y	ENST00000262189	NM_170606.2	806	tCc/tAc					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123256071	123256071	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0006382-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			283	279	1018	0	ENST00000358487.5:c.1838G>T	p.Gly613Val	p.G613V	ENST00000358487	NM_000141.4	613	gGc/gTc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2131609	2131609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0006382-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			246	290	932	1	ENST00000219476.3:c.3624G>T	p.Trp1208Cys	p.W1208C	ENST00000219476	NM_000548.3	1208	tgG/tgT					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188302	10188302	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			161	218	786	0	ENST00000256474.2:c.445G>C	p.Ala149Pro	p.A149P	ENST00000256474	NM_000551.3	149	Gcc/Ccc					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162622161	162622161	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0013163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	220	477	0	ENST00000366898.1:c.534+2T>A		p.X178_splice	ENST00000366898	NM_004562.2	178						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	292	635	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556122	29556123	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	158	248	0	ENST00000358273.4:c.2492_2493del	p.Thr831ArgfsTer33	p.T831Rfs*33	ENST00000358273	NM_001042492.2	830	gAC/g					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157495164	157495164	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	210	654	0	ENST00000346085.5:c.3048G>A	p.Met1016Ile	p.M1016I	ENST00000346085	NM_020732.3	1016	atG/atA					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67663355	67663355	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	265	846	1	ENST00000264010.4:c.1756G>A	p.Glu586Lys	p.E586K	ENST00000264010	NM_006565.3	586	Gaa/Aaa					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39613837	39613837	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	293	754	0	ENST00000262039.4:c.1755G>T	p.Leu585Phe	p.L585F	ENST00000262039	NM_002647.2	585	ttG/ttT					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602341	10602341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	521	900	3	ENST00000171111.5:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000171111	NM_203500.1	413	Cgt/Tgt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098450	11098451	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	-			P-0012908-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	440	740	0	ENST00000344626.4:c.969_970del	p.Pro324ArgfsTer62	p.P324Rfs*62	ENST00000344626	NM_003072.3	323	tCG/t					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	400	437	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	2095	398	0	ENST00000275493.2:c.2155G>T	p.Gly719Cys	p.G719C	ENST00000275493	NM_005228.3	719	Ggc/Tgc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249005	55249005	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	1685	383	0	ENST00000275493.2:c.2303G>T	p.Ser768Ile	p.S768I	ENST00000275493	NM_005228.3	768	aGc/aTc					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46739346	46739346	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	226	453	0	ENST00000371975.4:c.1537A>C	p.Ser513Arg	p.S513R	ENST00000371975	NM_003579.3	513	Agt/Cgt					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243858916	243858916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	196	452	0	ENST00000263826.5:c.149C>T	p.Pro50Leu	p.P50L	ENST00000263826	NM_005465.4	50	cCc/cTc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117677875	117677875	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs35269727		P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	174	438	0	ENST00000368508.3:c.4058A>C	p.Tyr1353Ser	p.Y1353S	ENST00000368508	NM_002944.2	1353	tAc/tCc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030402	49030402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	150	280	0	ENST00000267163.4:c.1877C>G	p.Ala626Gly	p.A626G	ENST00000267163	NM_000321.2	626	gCa/gGa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061558	38061558	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012043-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	79	143	0	ENST00000250448.2:c.431C>T	p.Ala144Val	p.A144V	ENST00000250448	NM_004496.3	144	gCg/gTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			226	185	455	1	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25972828	25972828	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			306	490	570	0	ENST00000435504.4:c.1597G>T	p.Val533Phe	p.V533F	ENST00000435504		533	Gtt/Ttt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66280147	66280147	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			339	96	304	0	ENST00000273854.3:c.1542C>A	p.Ser514Arg	p.S514R	ENST00000273854	NM_004439.5	514	agC/agA					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32417943	32417943	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			232	76	334	0	ENST00000332351.3:c.1109G>A	p.Arg370His	p.R370H	ENST00000332351	NM_024426.4	370	cGt/cAt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108160374	108160374	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			504	191	468	0	ENST00000278616.4:c.4282G>T	p.Glu1428Ter	p.E1428*	ENST00000278616	NM_000051.3	1428	Gaa/Taa					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12032477	12032477	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			173	93	314	0	ENST00000353533.5:c.913T>A	p.Phe305Ile	p.F305I	ENST00000353533	NM_003010.3	305	Ttt/Att					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30293198	30293198	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			205	159	526	0	ENST00000322652.5:c.488G>C	p.Gly163Ala	p.G163A	ENST00000322652	NM_015355.2	163	gGt/gCt					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55155241	55155242	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	C			P-0008473-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			433	160	547	1	ENST00000257290.5:c.2840_2841delinsC	p.Ser947ThrfsTer24	p.S947Tfs*24	ENST00000257290	NM_006206.4	947	aGT/aC					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47161938	47161938	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	57	374	0	ENST00000409792.3:c.4188T>A	p.Asn1396Lys	p.N1396K	ENST00000409792	NM_014159.6	1396	aaT/aaA					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142297531	142297531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	155	471	0	ENST00000350721.4:c.16C>G	p.Leu6Val	p.L6V	ENST00000350721	NM_001184.3	6	Ctg/Gtg					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106194050	106194050	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	139	386	0	ENST00000380013.4:c.4512C>G	p.Asn1504Lys	p.N1504K	ENST00000380013	NM_001127208.2	1504	aaC/aaG					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53225182	53225183	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	C			P-0012516-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	224	323	0	ENST00000375401.3:c.3035_3036delinsG	p.Ile1012SerfsTer43	p.I1012Sfs*43	ENST00000375401	NM_004187.3	1012	aTC/aG					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	175958505	175958505	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	357	472	0	ENST00000367669.3:c.1840G>C	p.Val614Leu	p.V614L	ENST00000367669	NM_022457.5	614	Gtc/Ctc					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26068413	26068413	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	352	432	0	ENST00000435504.4:c.77A>G	p.Asn26Ser	p.N26S	ENST00000435504		26	aAt/aGt					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212251610	212251610	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	351	441	0	ENST00000342788.4:c.3449A>G	p.Tyr1150Cys	p.Y1150C	ENST00000342788	NM_005235.2	1150	tAc/tGc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70332597	70332597	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	75	337	0	ENST00000373644.4:c.502G>T	p.Asp168Tyr	p.D168Y	ENST00000373644	NM_030625.2	168	Gat/Tat					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69633514	69633514	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	252	288	0	ENST00000334134.2:c.188G>C	p.Arg63Pro	p.R63P	ENST00000334134	NM_005247.2	63	cGc/cCc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039230	49039230	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	388	427	1	ENST00000267163.4:c.2308C>T	p.Gln770Ter	p.Q770*	ENST00000267163	NM_000321.2	770	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577017	7577017	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0011153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	283	371	1	ENST00000269305.4:c.919+2T>A		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40368082	40368082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	428	685	0	ENST00000293328.3:c.1423G>A	p.Asp475Asn	p.D475N	ENST00000293328	NM_012448.3	475	Gac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	122	484	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	108	759	0	ENST00000288602.6:c.1391G>T	p.Gly464Val	p.G464V	ENST00000288602	NM_004333.4	464	gGa/gTa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106364	27106364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	155	588	0	ENST00000324856.7:c.5975C>T	p.Ser1992Leu	p.S1992L	ENST00000324856	NM_006015.4	1992	tCa/tTa					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149505128	149505128	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1602	191	855	0	ENST00000261799.4:c.1687G>A	p.Glu563Lys	p.E563K	ENST00000261799	NM_002609.3	563	Gag/Aag					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128843278	128843278	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs41303402		P-0012993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	179	908	3	ENST00000249373.3:c.385G>A	p.Val129Ile	p.V129I	ENST00000249373	NM_005631.4	129	Gta/Ata					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135787805	135787811	+	frameshift_variant	Frame_Shift_Del	DEL	ACACTCG	ACACTCG	-			P-0012993-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	160	663	0	ENST00000298552.3:c.771_777del	p.Ile257MetfsTer59	p.I257Mfs*59	ENST00000298552	NM_001162426.1	257	atCGAGTGT/at					NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	67	636	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	51	569	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10600425	10600425	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	125	855	0	ENST00000171111.5:c.1430del	p.Gly477AlafsTer23	p.G477Afs*23	ENST00000171111	NM_203500.1	477	gGc/gc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140534567	140534567	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	93	415	0	ENST00000288602.6:c.346T>C	p.Ser116Pro	p.S116P	ENST00000288602	NM_004333.4	116	Tca/Cca					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158594054	158594054	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	145	526	0	ENST00000263640.3:c.1519del	p.Thr507LeufsTer14	p.T507Lfs*14	ENST00000263640	NM_001105.4	507	Act/ct					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8111503	8111513	+	frameshift_variant	Frame_Shift_Del	DEL	GGAATGCCAAT	GGAATGCCAAT	-			P-0011072-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			345	128	579	0	ENST00000346208.3:c.991_1001del	p.Asn331GlyfsTer17	p.N331Gfs*17	ENST00000346208		330	aGGAATGCCAAT/a					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	167	540	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0012329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	222	622	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2984016	2984016	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	216	753	0	ENST00000396946.4:c.514G>C	p.Glu172Gln	p.E172Q	ENST00000396946	NM_032415.4	172	Gag/Cag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49436867	49436867	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	236	790	0	ENST00000301067.7:c.5636C>G	p.Ser1879Cys	p.S1879C	ENST00000301067	NM_003482.3	1879	tCc/tGc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48581219	48581222	+	stop_gained	Nonsense_Mutation	ONP	GAAG	GAAG	AAAT			P-0012329-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	113	685	1	ENST00000342988.3:c.523_526delinsAAAT	p.Glu175_Gly176delinsLysTer	p.E175_G176delinsK*	ENST00000342988	NM_005359.5	175	GAAGga/AAATga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	101	381	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	132	270	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	89	495	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0012435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	64	418	5	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17948833	17948833	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	106	529	2	ENST00000458235.1:c.1609C>T	p.Arg537Trp	p.R537W	ENST00000458235	NM_000215.3	537	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	157	229	9	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106621	27106621	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	128	352	3	ENST00000324856.7:c.6232G>T	p.Glu2078Ter	p.E2078*	ENST00000324856	NM_006015.4	2078	Gag/Tag					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53230884	53230884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	23	210	0	ENST00000375401.3:c.1909C>T	p.Arg637Trp	p.R637W	ENST00000375401	NM_004187.3	637	Cgg/Tgg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162688889	162688889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1507	92	379	1	ENST00000367921.3:c.36C>G	p.Phe12Leu	p.F12L	ENST00000367921	NM_006182.2	12	ttC/ttG					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138456620	138456620	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	68	457	0	ENST00000289153.2:c.730T>C	p.Tyr244His	p.Y244H	ENST00000289153	NM_006219.2	244	Tat/Cat					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66509118	66509118	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	65	267	2	ENST00000273854.3:c.209T>G	p.Met70Arg	p.M70R	ENST00000273854	NM_004439.5	70	aTg/aGg					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056544	26056544	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	80	131	0	ENST00000343677.2:c.113C>T	p.Pro38Leu	p.P38L	ENST00000343677	NM_005319.3	38	cCc/cTc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508727	106508727	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	129	275	0	ENST00000359195.3:c.721C>G	p.Pro241Ala	p.P241A	ENST00000359195	NM_002649.2	241	Ccc/Gcc					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128851988	128851988	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	123	453	8	ENST00000249373.3:c.2060C>A	p.Pro687Gln	p.P687Q	ENST00000249373	NM_005631.4	687	cCg/cAg					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98229584	98229584	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	66	381	0	ENST00000331920.6:c.2374G>C	p.Ala792Pro	p.A792P	ENST00000331920	NM_000264.3	792	Gct/Cct					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43606674	43606674	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	110	484	6	ENST00000355710.3:c.1283A>G	p.Glu428Gly	p.E428G	ENST00000355710	NM_020975.4	428	gAa/gGa					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43608351	43608351	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	87	523	12	ENST00000355710.3:c.1699G>T	p.Asp567Tyr	p.D567Y	ENST00000355710	NM_020975.4	567	Gac/Tac					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123298139	123298139	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	52	432	0	ENST00000358487.5:c.715T>C	p.Ser239Pro	p.S239P	ENST00000358487	NM_000141.4	239	Tcc/Ccc					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67201900	67201900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	235	283	12	ENST00000312629.5:c.1100C>T	p.Pro367Leu	p.P367L	ENST00000312629	NM_003952.2	367	cCg/cTg					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57860032	57860032	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	151	577	0	ENST00000228682.2:c.772A>T	p.Ser258Cys	p.S258C	ENST00000228682	NM_005269.2	258	Agc/Tgc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48881542	48881542	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	138	276	4	ENST00000267163.4:c.264G>C	p.Leu88Phe	p.L88F	ENST00000267163	NM_000321.2	88	ttG/ttC					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91333951	91333951	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			719	106	382	8	ENST00000355112.3:c.2896C>G	p.Leu966Val	p.L966V	ENST00000355112	NM_000057.2	966	Ctc/Gtc					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7983248	7983248	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			403	204	399	4	ENST00000319144.4:c.766G>T	p.Glu256Ter	p.E256*	ENST00000319144	NM_001139.2	256	Gag/Tag					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39537699	39537699	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	83	347	0	ENST00000262039.4:c.233A>G	p.Tyr78Cys	p.Y78C	ENST00000262039	NM_002647.2	78	tAc/tGc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602757	10602757	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	145	361	11	ENST00000171111.5:c.821A>G	p.His274Arg	p.H274R	ENST00000171111	NM_203500.1	274	cAc/cGc					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46256707	46256707	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1086	148	664	8	ENST00000371998.3:c.763A>G	p.Thr255Ala	p.T255A	ENST00000371998		255	Aca/Gca					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41521913	41521913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	208	473	0	ENST00000263253.7:c.775C>T	p.Gln259Ter	p.Q259*	ENST00000263253	NM_001429.3	259	Cag/Tag					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20152085	20152085	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	139	206	0	ENST00000379607.5:c.245G>A	p.Arg82Gln	p.R82Q	ENST00000379607	NM_001412.3	82	cGa/cAa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28908212	28908212	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	157	424	3	ENST00000282397.4:c.2543del	p.Gly848AlafsTer13	p.G848Afs*13	ENST00000282397	NM_002019.4	848	gGc/gc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16040683	16040683	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	54	430	1	ENST00000268712.3:c.1451del	p.Asn484MetfsTer31	p.N484Mfs*31	ENST00000268712	NM_006311.3	484	aAt/at					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47639574	47639613	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATCACAGAAAGAAAAAAAGCTGACTTTTCCACAAAAG	CTGATCACAGAAAGAAAAAAAGCTGACTTTTCCACAAAAG	-			P-0010736-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	131	250	0	ENST00000233146.2:c.667_706del	p.Leu223ThrfsTer10	p.L223Tfs*10	ENST00000233146	NM_000251.2	223	CTGATCACAGAAAGAAAAAAAGCTGACTTTTCCACAAAAGac/ac					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005884-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			606	205	376	1	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675571	30675571	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005884-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1895	558	884	0	ENST00000376406.3:c.2785G>A	p.Asp929Asn	p.D929N	ENST00000376406	NM_014641.2	929	Gat/Aat					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81972419	81972419	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005884-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			601	471	765	1	ENST00000359376.3:c.3212G>A	p.Arg1071His	p.R1071H	ENST00000359376	NM_002661.3	1071	cGc/cAc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			418	261	332	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014692-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1215	490	1130	0	ENST00000269305.4:c.412G>C	p.Ala138Pro	p.A138P	ENST00000269305	NM_001126112.2	138	Gcc/Ccc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	37	316	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115751	8115751	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012318-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	135	905	2	ENST00000346208.3:c.1097G>A	p.Arg366Gln	p.R366Q	ENST00000346208		366	cGa/cAa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	23	426	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	40	538	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151960117	151960117	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012645-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	64	545	0	ENST00000262189.6:c.1283A>G	p.Asn428Ser	p.N428S	ENST00000262189	NM_170606.2	428	aAt/aGt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11190645	11190645	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	137	471	1	ENST00000361445.4:c.5554G>A	p.Glu1852Lys	p.E1852K	ENST00000361445	NM_004958.3	1852	Gag/Aag					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43607672	43607672	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0014420-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	70	915	0	ENST00000355710.3:c.1648G>A	p.Gly550Arg	p.G550R	ENST00000355710	NM_020975.4	550	Ggg/Agg					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0012925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			112	118	402	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36935355	36935355	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	152	1209	0	ENST00000361632.4:c.1372G>T	p.Gly458Cys	p.G458C	ENST00000361632		458	Ggc/Tgc					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58143278	58143278	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			158	107	297	0	ENST00000257904.6:c.642C>G	p.Phe214Leu	p.F214L	ENST00000257904	NM_000075.3	214	ttC/ttG					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88476344	88476344	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	30	485	0	ENST00000360948.2:c.1788G>C	p.Gln596His	p.Q596H	ENST00000360948	NM_001012338.2	596	caG/caC					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7125353	7125353	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			135	47	825	0	ENST00000302850.5:c.3199G>A	p.Glu1067Lys	p.E1067K	ENST00000302850	NM_000208.2	1067	Gag/Aag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117650588	117650589	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0012925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			110	82	1051	0	ENST00000368508.3:c.5269_5270delinsCT	p.Gly1757Leu	p.G1757L	ENST00000368508	NM_002944.2	1757	GGc/CTc					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189582020	189582020	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	402	305	0	ENST00000264731.3:c.580-1G>A		p.X194_splice	ENST00000264731	NM_003722.4	194						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578404	7578404	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	190	190	0	ENST00000269305.4:c.526T>A	p.Cys176Ser	p.C176S	ENST00000269305	NM_001126112.2	176	Tgc/Agc					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178095620	178095620	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	442	666	0	ENST00000397062.3:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000397062	NM_006164.4	571	Gaa/Aaa					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212566842	212566842	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	178	362	0	ENST00000342788.4:c.1339T>G	p.Phe447Val	p.F447V	ENST00000342788	NM_005235.2	447	Ttc/Gtc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86564380	86564380	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	271	332	0	ENST00000274376.6:c.112A>G	p.Ile38Val	p.I38V	ENST00000274376	NM_002890.2	38	Ata/Gta					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161781129	161781129	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	324	529	0	ENST00000366898.1:c.1276G>T	p.Glu426Ter	p.E426*	ENST00000366898	NM_004562.2	426	Gaa/Taa					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67477143	67477143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	331	398	1	ENST00000327367.4:c.950C>T	p.Ser317Phe	p.S317F	ENST00000327367	NM_005902.3	317	tCt/tTt					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118166039	118166040	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0010450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1881	315	441	1	ENST00000369448.3:c.550_551del	p.Phe184ProfsTer12	p.F184Pfs*12	ENST00000369448	NM_017709.3	183	tcTTtc/tctc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936093	178936094	+	missense_variant	Missense_Mutation	DNP	GC	GC	TA			P-0010450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	109	173	0	ENST00000263967.3:c.1635_1636delinsTA	p.Glu545_Gln546delinsAspLys	p.E545_Q546delinsDK	ENST00000263967	NM_006218.2	545	gaGCag/gaTAag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	1013	613	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118165890	118165890	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	326	392	0	ENST00000369448.3:c.400C>G	p.Leu134Val	p.L134V	ENST00000369448	NM_017709.3	134	Ctg/Gtg					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138664853	138664853	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			89	14	49	0	ENST00000330315.3:c.712A>G	p.Ser238Gly	p.S238G	ENST00000330315	NM_023067.3	238	Agc/Ggc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55564722	55564722	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	240	361	0	ENST00000288135.5:c.610G>T	p.Val204Leu	p.V204L	ENST00000288135	NM_000222.2	204	Gtg/Ttg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8499808	8499808	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	422	527	0	ENST00000356435.5:c.2161G>T	p.Glu721Ter	p.E721*	ENST00000356435		721	Gag/Tag					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139401890	139401890	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0010901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	266	407	0	ENST00000277541.6:c.3511-1G>A		p.X1171_splice	ENST00000277541	NM_017617.3	1171						NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911646	32911646	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	594	750	3	ENST00000380152.3:c.3154G>T	p.Ala1052Ser	p.A1052S	ENST00000380152		1052	Gca/Tca					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48937028	48937028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	360	444	0	ENST00000267163.4:c.796C>T	p.Gln266Ter	p.Q266*	ENST00000267163	NM_000321.2	266	Caa/Taa					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42795106	42795106	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010901-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	390	605	0	ENST00000575354.2:c.2186A>T	p.Tyr729Phe	p.Y729F	ENST00000575354	NM_015125.3	729	tAt/tTt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1148	644	616	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259166	89259166	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	141	516	1	ENST00000336596.2:c.310C>T	p.Arg104Ter	p.R104*	ENST00000336596	NM_005233.5	104	Cga/Tga					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66242779	66242779	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	148	493	1	ENST00000273854.3:c.1793G>T	p.Cys598Phe	p.C598F	ENST00000273854	NM_004439.5	598	tGc/tTc					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38972002	38972002	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1560	659	819	0	ENST00000357387.3:c.949T>C	p.Cys317Arg	p.C317R	ENST00000357387	NM_152756.3	317	Tgc/Cgc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133219215	133219215	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	90	589	0	ENST00000320574.5:c.4829C>A	p.Pro1610His	p.P1610H	ENST00000320574	NM_006231.2	1610	cCt/cAt					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91293066	91293066	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	98	466	0	ENST00000355112.3:c.568A>G	p.Lys190Glu	p.K190E	ENST00000355112	NM_000057.2	190	Aag/Gag					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221316	1221317	+	frameshift_variant	Frame_Shift_Del	DEL	CC	CC	T			P-0011412-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	233	610	0	ENST00000326873.7:c.839_840delinsT	p.Pro280LeufsTer7	p.P280Lfs*7	ENST00000326873	NM_000455.4	280	cCC/cT					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0013769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	236	398	0	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	140	646	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30032795	30032795	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	142	712	0	ENST00000338641.4:c.170G>A	p.Arg57Gln	p.R57Q	ENST00000338641	NM_000268.3	57	cGa/cAa					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589558	67589614	+	inframe_deletion	In_Frame_Del	DEL	AATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAAAA	AATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAAAA	-			P-0013769-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	63	371	0	ENST00000274335.5:c.1322_1378del	p.Asn441_Lys459del	p.N441_K459del	ENST00000274335		441	AATATTGAAGCTGTAGGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAAAA/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	198	265	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0011350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	216	244	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0011350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	100	332	2	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15272206	15272206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	22	105	0	ENST00000263388.2:c.6233G>A	p.Arg2078Gln	p.R2078Q	ENST00000263388	NM_000435.2	2078	cGg/cAg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436850	52436850	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	103	317	0	ENST00000460680.1:c.1928T>C	p.Ile643Thr	p.I643T	ENST00000460680	NM_004656.3	643	aTt/aCt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117730805	117730805	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	71	255	2	ENST00000368508.3:c.229C>T	p.Arg77Trp	p.R77W	ENST00000368508	NM_002944.2	77	Cgg/Tgg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2954916	2954916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	310	339	0	ENST00000396946.4:c.2794C>T	p.Arg932Trp	p.R932W	ENST00000396946	NM_032415.4	932	Cgg/Tgg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100469	8100469	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011350-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	183	422	1	ENST00000346208.3:c.443C>T	p.Pro148Leu	p.P148L	ENST00000346208		148	cCg/cTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	112	411	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0011527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	34	158	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0011527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			265	34	158	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	148	493	1	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101904860	101904860	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	71	471	0	ENST00000374994.4:c.848A>G	p.His283Arg	p.H283R	ENST00000374994	NM_004612.2	283	cAt/cGt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241708	55241708	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	240	488	0	ENST00000275493.2:c.2156G>C	p.Gly719Ala	p.G719A	ENST00000275493	NM_005228.3	719	gGc/gCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	23	741	1	ENST00000269305.4:c.638G>A	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGa/cAa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044901	47044901	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	95	584	0	ENST00000329236.7:c.1993G>T	p.Glu665Ter	p.E665*	ENST00000329236	NM_001204466.1	665	Gag/Tag					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759697	133759697	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	44	318	0	ENST00000318560.5:c.2020C>T	p.Arg674Trp	p.R674W	ENST00000318560	NM_005157.4	674	Cgg/Tgg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88476383	88476383	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	50	422	0	ENST00000360948.2:c.1749G>T	p.Lys583Asn	p.K583N	ENST00000360948	NM_001012338.2	583	aaG/aaT					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152163835	152163835	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	70	612	0	ENST00000206249.3:c.556G>C	p.Ala186Pro	p.A186P	ENST00000206249	NM_000125.3	186	Gca/Cca					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8338963	8338963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	107	609	1	ENST00000356435.5:c.5338C>T	p.Pro1780Ser	p.P1780S	ENST00000356435		1780	Cca/Tca					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484202	8484203	+	missense_variant	Missense_Mutation	DNP	GG	GG	CT			P-0013872-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	101	682	0	ENST00000356435.5:c.3329_3330delinsAG	p.Thr1110Lys	p.T1110K	ENST00000356435		1110	aCC/aAG					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	120	222	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	180	268	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175766	112175766	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	116	187	0	ENST00000257430.4:c.4476del	p.Thr1493ArgfsTer14	p.T1493Rfs*14	ENST00000257430	NM_000038.5	1492	gCc/gc					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70008548	70008548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	98	172	0	ENST00000352241.4:c.1138C>T	p.Arg380Trp	p.R380W	ENST00000352241	NM_198159.2	380	Cgg/Tgg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66863125	66863125	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs139524801		P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	332	355	0	ENST00000374690.3:c.1644G>T	p.Leu548Phe	p.L548F	ENST00000374690	NM_000044.3	548	ttG/ttT					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47035903	47035903	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	323	258	1	ENST00000329236.7:c.352del	p.Leu118SerfsTer71	p.L118Sfs*71	ENST00000329236	NM_001204466.1	117	tCc/tc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174471	112174475	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAC	AAAAC	-			P-0012032-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	67	192	0	ENST00000257430.4:c.3183_3187del	p.Gln1062Ter	p.Q1062*	ENST00000257430	NM_000038.5	1060	atAAAACaa/ataa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	178	793	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11259650	11259650	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			122	177	807	0	ENST00000361445.4:c.4055A>C	p.Glu1352Ala	p.E1352A	ENST00000361445	NM_004958.3	1352	gAa/gCa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717772	89717772	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	24	498	0	ENST00000371953.3:c.797A>G	p.Lys266Arg	p.K266R	ENST00000371953	NM_000314.4	266	aAa/aGa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70361114	70361114	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014691-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			106	39	675	0	ENST00000374080.3:c.6302A>G	p.Gln2101Arg	p.Q2101R	ENST00000374080		2101	cAg/cGg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16256793	16256793	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	137	549	0	ENST00000375759.3:c.4058T>C	p.Val1353Ala	p.V1353A	ENST00000375759	NM_015001.2	1353	gTg/gCg					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215674254	215674254	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	318	597	0	ENST00000260947.4:c.40A>G	p.Ile14Val	p.I14V	ENST00000260947	NM_000465.2	14	Atc/Gtc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175576	112175576	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs74535574		P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	150	769	1	ENST00000257430.4:c.4285C>T	p.Gln1429Ter	p.Q1429*	ENST00000257430	NM_000038.5	1429	Caa/Taa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115118811	115118811	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	142	782	1	ENST00000257566.3:c.530A>T	p.Asp177Val	p.D177V	ENST00000257566	NM_016569.3	177	gAc/gTc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435004	110435004	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	92	520	2	ENST00000375856.3:c.3397G>A	p.Ala1133Thr	p.A1133T	ENST00000375856	NM_003749.2	1133	Gcc/Acc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72991341	72991341	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	261	1111	0	ENST00000268489.5:c.2704A>G	p.Met902Val	p.M902V	ENST00000268489	NM_006885.3	902	Atg/Gtg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40735447	40735447	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2026	134	864	0	ENST00000373198.4:c.3426G>T	p.Arg1142Ser	p.R1142S	ENST00000373198	NM_133170.3	1142	agG/agT					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66905935	66905935	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	483	533	1	ENST00000374690.3:c.1852C>T	p.Arg618Trp	p.R618W	ENST00000374690	NM_000044.3	618	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112174998	112174999	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	305	451	0	ENST00000257430.4:c.3709_3710del	p.Gln1237GlufsTer2	p.Q1237Efs*2	ENST00000257430	NM_000038.5	1236	gCA/g					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412503	63412503	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	560	517	0	ENST00000330258.3:c.664delC	p.Gln222LysfsTer60	p.Q222Kfs*60	ENST00000330258	NM_152424.3	222	Caa/aa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577510	7577511	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0013103-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	351	655	0	ENST00000269305.4:c.770_771delTG	p.Leu257ArgfsTer6	p.L257Rfs*6	ENST00000269305	NM_001126112.2	257	cTG/c					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	31	437	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578268	7578268	+	missense_variant	Missense_Mutation	SNP	A	A	C	rs1057519998		P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	30	544	0	ENST00000269305.4:c.581T>G	p.Leu194Arg	p.L194R	ENST00000269305	NM_001126112.2	194	cTt/cGt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48581211	48581211	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	29	436	0	ENST00000342988.3:c.515T>A	p.Leu172Ter	p.L172*	ENST00000342988	NM_005359.5	172	tTg/tAg					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105239426	105239426	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			162	21	486	0	ENST00000349310.3:c.961C>A	p.Leu321Met	p.L321M	ENST00000349310	NM_001014432.1	321	Ctg/Atg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72821254	72821254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			131	12	513	1	ENST00000268489.5:c.10921G>A	p.Val3641Ile	p.V3641I	ENST00000268489	NM_006885.3	3641	Gtt/Att					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149441368	149441368	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	11	623	0	ENST00000286301.3:c.1671G>T	p.Glu557Asp	p.E557D	ENST00000286301	NM_005211.3	557	gaG/gaT					NEWRECORD																																																																									
HIST1H3C	0	MSKCC	GRCh37	6	26045884	26045884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			132	14	327	0	ENST00000540144.1:c.246C>A	p.Asp82Glu	p.D82E	ENST00000540144	NM_003531.2	82	gaC/gaA					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971153	21971174	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCGCCGTGGAGCAGCAGCAG	CCGCGCCGTGGAGCAGCAGCAG	-			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	18	302	0	ENST00000304494.5:c.184_205del	p.Leu62SerfsTer77	p.L62Sfs*77	ENST00000304494	NM_000077.4	62	CTGCTGCTGCTCCACGGCGCGGag/ag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971153	21971174	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCGCCGTGGAGCAGCAGCAG	CCGCGCCGTGGAGCAGCAGCAG	-			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	18	302	0	ENST00000304494.5:c.184_205del	p.Leu62SerfsTer77	p.L62Sfs*77	ENST00000304494	NM_000077.4	62	CTGCTGCTGCTCCACGGCGCGGag/ag					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971153	21971174	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCGCCGTGGAGCAGCAGCAG	CCGCGCCGTGGAGCAGCAGCAG	-			P-0014383-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	18	302	0	ENST00000304494.5:c.184_205del	p.Leu62SerfsTer77	p.L62Sfs*77	ENST00000304494	NM_000077.4	62	CTGCTGCTGCTCCACGGCGCGGag/ag					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29012389	29012389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013302-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	393	582	2	ENST00000282397.4:c.482C>T	p.Thr161Met	p.T161M	ENST00000282397	NM_002019.4	161	aCg/aTg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	47	404	1	ENST00000288602.6:c.1803A>T	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaT					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44949985	44949985	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	39	301	0	ENST00000377967.4:c.3754G>C	p.Ala1252Pro	p.A1252P	ENST00000377967	NM_021140.2	1252	Gca/Cca					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128843287	128843287	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	50	761	0	ENST00000249373.3:c.394C>T	p.Pro132Ser	p.P132S	ENST00000249373	NM_005631.4	132	Ccc/Tcc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53228172	53228172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013022-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	59	292	0	ENST00000375401.3:c.2230C>T	p.Arg744Trp	p.R744W	ENST00000375401	NM_004187.3	744	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	75	513	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	203	442	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0012810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	92	250	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	233	466	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610307	10610307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012810-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	120	509	0	ENST00000171111.5:c.403C>T	p.Arg135Cys	p.R135C	ENST00000171111	NM_203500.1	135	Cgc/Tgc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89445051	89445051	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0008966-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			615	344	532	0	ENST00000336596.2:c.1371G>A	p.Trp457Ter	p.W457*	ENST00000336596	NM_005233.5	457	tgG/tgA					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857158	9857158	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0008966-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			779	811	777	1	ENST00000330684.3:c.4243G>A	p.Asp1415Asn	p.D1415N	ENST00000330684	NM_001134407.1	1415	Gac/Aac					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9892187	9892187	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008966-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	416	667	0	ENST00000330684.3:c.2303G>T	p.Gly768Val	p.G768V	ENST00000330684	NM_001134407.1	768	gGc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578264	7578338	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCA	GATAAGATGCTGAGGAGGGGCCAGACCTAAGAGCAATCAGTGAGGAATCAGAGGCCTGGGGACCCTGGGCAACCA	TT			P-0008966-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			280	494	671	3	ENST00000269305.4:c.559+33_585delinsAA		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	23	470	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028618	12028618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			450	26	257	2	ENST00000353533.5:c.821G>T	p.Arg274Ile	p.R274I	ENST00000353533	NM_003010.3	274	aGa/aTa					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333560	70333560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	29	400	2	ENST00000373644.4:c.1465C>A	p.Pro489Thr	p.P489T	ENST00000373644	NM_030625.2	489	Cct/Act					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142281952	142281952	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0014274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			326	19	204	0	ENST00000350721.4:c.293-1G>T		p.X98_splice	ENST00000350721	NM_001184.3	98						NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242469	55242469	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			938	31	517	0	ENST00000275493.2:c.2239T>G	p.Leu747Val	p.L747V	ENST00000275493	NM_005228.3	747	Tta/Gta					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47045728	47045728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014274-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1184	67	884	0	ENST00000329236.7:c.2375G>A	p.Gly792Asp	p.G792D	ENST00000329236	NM_001204466.1	792	gGc/gAc					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	192	863	2	ENST00000267101.3:c.310G>T	p.Val104Leu	p.V104L	ENST00000267101	NM_001982.3	104	Gtg/Ttg					NEWRECORD																																																																									
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0014364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			157	54	617	0	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc					NEWRECORD																																																																									
INPPL1	0	MSKCC	GRCh37	11	71939399	71939399	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			200	69	689	0	ENST00000298229.2:c.254A>G	p.Gln85Arg	p.Q85R	ENST00000298229	NM_001567.3	85	cAg/cGg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42059202	42059202	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	22	368	0	ENST00000219905.7:c.8922G>C	p.Glu2974Asp	p.E2974D	ENST00000219905	NM_001164273.1	2974	gaG/gaC					NEWRECORD																																																																									
WHSC1L1	0	MSKCC	GRCh37	8	38184259	38184259	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014364-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			71	216	463	0	ENST00000317025.8:c.1697C>G	p.Ser566Cys	p.S566C	ENST00000317025	NM_023034.1	566	tCt/tGt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593605	55593610	+	inframe_deletion	In_Frame_Del	DEL	GAAGGT	GAAGGT	-			P-0014165-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	381	699	0	ENST00000288135.5:c.1671_1676del	p.Trp557_Val559delinsCys	p.W557_V559delinsC	ENST00000288135	NM_000222.2	557	tgGAAGGTt/tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	286	517	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591825	48591825	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			431	60	505	0	ENST00000342988.3:c.988G>A	p.Glu330Lys	p.E330K	ENST00000342988	NM_005359.5	330	Gaa/Aaa					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604701	48604701	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	57	451	0	ENST00000342988.3:c.1523G>A	p.Gly508Asp	p.G508D	ENST00000342988	NM_005359.5	508	gGc/gAc					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12044503	12044532	+	inframe_deletion	In_Frame_Del	DEL	GAGGTCGCATGCTATGTTTGTAAAATCCTG	GAGGTCGCATGCTATGTTTGTAAAATCCTG	-			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			406	126	497	0	ENST00000353533.5:c.1128_1157del	p.Glu376_Leu385del	p.E376_L385del	ENST00000353533	NM_003010.3	376	GAGGTCGCATGCTATGTTTGTAAAATCCTG/-					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591844	48591844	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	62	536	0	ENST00000342988.3:c.1007G>A	p.Gly336Glu	p.G336E	ENST00000342988	NM_005359.5	336	gGa/gAa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41556727	41556727	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	63	449	2	ENST00000263253.7:c.3671+1G>A		p.X1224_splice	ENST00000263253	NM_001429.3	1224						NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71021763	71021763	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	116	412	0	ENST00000318789.4:c.1595C>A	p.Ala532Glu	p.A532E	ENST00000318789	NM_032682.5	532	gCa/gAa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936083	178936083	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014943-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	113	566	0	ENST00000263967.3:c.1625A>G	p.Glu542Gly	p.E542G	ENST00000263967	NM_006218.2	542	gAa/gGa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0012340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	42	296	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0012340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	127	604	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112116601	112116601	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0012340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	39	305	0	ENST00000257430.4:c.645+1G>A		p.X215_splice	ENST00000257430	NM_000038.5	215						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	322	455	3	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913403		P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			461	31	243	0	ENST00000349496.5:c.110C>G	p.Ser37Cys	p.S37C	ENST00000349496	NM_001904.3	37	tCt/tGt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575671	48575671	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	235	416	0	ENST00000342988.3:c.431C>G	p.Ser144Ter	p.S144*	ENST00000342988	NM_005359.5	144	tCa/tGa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044713	47044713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	134	727	0	ENST00000329236.7:c.1879G>T	p.Glu627Ter	p.E627*	ENST00000329236	NM_001204466.1	627	Gag/Tag					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204512055	204512055	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			489	73	245	0	ENST00000367182.3:c.655G>A	p.Asp219Asn	p.D219N	ENST00000367182	NM_001278516.1	219	Gat/Aat					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108201088	108201099	+	inframe_deletion	In_Frame_Del	DEL	CCGACTTTGTTC	CCGACTTTGTTC	-			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	71	354	0	ENST00000278616.4:c.7457_7468del	p.Arg2486_Ser2489del	p.R2486_S2489del	ENST00000278616	NM_000051.3	2485	ttCCGACTTTGTTCc/ttc					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865689	57865689	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	103	706	0	ENST00000228682.2:c.3166C>G	p.Pro1056Ala	p.P1056A	ENST00000228682	NM_005269.2	1056	Ccc/Gcc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42794384	42794384	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	106	687	1	ENST00000575354.2:c.1465-1G>T		p.X489_splice	ENST00000575354	NM_015125.3	489						NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1271233	1271233	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	18	193	0	ENST00000310581.5:c.2468+1G>A		p.X823_splice	ENST00000310581	NM_198253.2	823						NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33288194	33288194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014772-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	113	391	0	ENST00000374542.5:c.1214C>T	p.Ser405Phe	p.S405F	ENST00000374542	NM_001141970.1	405	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			713	85	422	2	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			748	112	370	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380276	25380276	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			964	132	537	0	ENST00000256078.4:c.182A>T	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAa/cTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			828	102	476	0	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9777072	9777072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			903	100	703	0	ENST00000377346.4:c.836C>T	p.Ser279Phe	p.S279F	ENST00000377346	NM_005026.3	279	tCc/tTc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11190830	11190830	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			323	62	225	0	ENST00000361445.4:c.5369G>T	p.Trp1790Leu	p.W1790L	ENST00000361445	NM_004958.3	1790	tGg/tTg					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333461	70333461	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			739	103	460	0	ENST00000373644.4:c.1366G>T	p.Val456Phe	p.V456F	ENST00000373644	NM_030625.2	456	Gtc/Ttc					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125513719	125513719	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1123	157	650	1	ENST00000428830.2:c.847G>T	p.Val283Leu	p.V283L	ENST00000428830	NM_001114121.2	283	Gtg/Ttg					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12022880	12022880	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			788	87	549	0	ENST00000396373.4:c.986C>G	p.Ala329Gly	p.A329G	ENST00000396373	NM_001987.4	329	gCc/gGc					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63545762	63545762	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			730	104	481	0	ENST00000307078.5:c.832G>T	p.Asp278Tyr	p.D278Y	ENST00000307078	NM_004655.3	278	Gat/Tat					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212295720	212295720	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			901	94	505	0	ENST00000342788.4:c.2593G>T	p.Ala865Ser	p.A865S	ENST00000342788	NM_005235.2	865	Gcc/Tcc					NEWRECORD																																																																									
CRKL	0	MSKCC	GRCh37	22	21272358	21272358	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1134	115	737	0	ENST00000354336.3:c.136G>A	p.Gly46Arg	p.G46R	ENST00000354336	NM_005207.3	46	Ggg/Agg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142280139	142280139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1075	137	580	0	ENST00000350721.4:c.1295G>C	p.Arg432Pro	p.R432P	ENST00000350721	NM_001184.3	432	cGt/cCt					NEWRECORD																																																																									
DCUN1D1	0	MSKCC	GRCh37	3	182681734	182681734	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			819	104	441	0	ENST00000292782.4:c.324G>T	p.Lys108Asn	p.K108N	ENST00000292782	NM_020640.2	108	aaG/aaT					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149501517	149501517	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	123	633	0	ENST00000261799.4:c.2270T>C	p.Met757Thr	p.M757T	ENST00000261799	NM_002609.3	757	aTg/aCg					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152265377	152265377	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			769	90	506	0	ENST00000206249.3:c.830G>T	p.Arg277Met	p.R277M	ENST00000206249	NM_000125.3	277	aGg/aTg					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729321	41729321	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1282	161	857	0	ENST00000242208.4:c.1208A>G	p.Tyr403Cys	p.Y403C	ENST00000242208	NM_002192.2	403	tAc/tGc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76763842	76763843	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	125	657	0	ENST00000373344.5:c.7465_7466delinsTT	p.Gly2489Leu	p.G2489L	ENST00000373344	NM_000489.3	2489	GGg/TTg					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123195644	123195644	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014135-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1117	105	490	0	ENST00000218089.9:c.1558G>T	p.Ala520Ser	p.A520S	ENST00000218089	NM_001042749.1	520	Gct/Tct					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26029159	26029159	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	44	522	0	ENST00000435504.4:c.191C>T	p.Ser64Phe	p.S64F	ENST00000435504		64	tCc/tTc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47139496	47139496	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014202-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	83	605	0	ENST00000409792.3:c.5091C>G	p.Ile1697Met	p.I1697M	ENST00000409792	NM_014159.6	1697	atC/atG					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16082371	16082371	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	60	618	0	ENST00000281043.3:c.185C>T	p.Ser62Leu	p.S62L	ENST00000281043	NM_005378.4	62	tCg/tTg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162967	47162974	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTTCTG	ATCTTCTG	-			P-0013240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	54	606	0	ENST00000409792.3:c.3152_3159del	p.Ser1051TyrfsTer5	p.S1051Yfs*5	ENST00000409792	NM_014159.6	1051	tCAGAAGAT/t					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183769	10183770	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	T			P-0013240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	62	468	0	ENST00000256474.2:c.238_239delinsT	p.Ser80PhefsTer79	p.S80Ffs*79	ENST00000256474	NM_000551.3	80	AGt/Tt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52662922	52662926	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCA	CTGCA	TGC			P-0013240-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	91	617	0	ENST00000394830.3:c.1427_1431delinsGCA	p.Leu476CysfsTer30	p.L476Cfs*30	ENST00000394830	NM_018313.4	476	tTGCAG/tGCA					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006814-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			572	119	475	1	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36987045	36987047	+	inframe_deletion	In_Frame_Del	DEL	TAC	TAC	-			P-0006814-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			427	68	328	0	ENST00000354822.5:c.642_644del	p.Lys214_Tyr215delinsAsn	p.K214_Y215delinsN	ENST00000354822	NM_001079668.2	214	aaGTAc/aac					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140477861	140477861	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006814-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	190	582	0	ENST00000288602.6:c.1447A>G	p.Lys483Glu	p.K483E	ENST00000288602	NM_004333.4	483	Aaa/Gaa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0006814-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1254	224	802	3	ENST00000329236.7:c.1459+1G>A		p.X487_splice	ENST00000329236	NM_001204466.1	487						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	76	395	0	ENST00000269305.4:c.743G>T	p.Arg248Leu	p.R248L	ENST00000269305	NM_001126112.2	248	cGg/cTg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88727521	88727521	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	51	341	0	ENST00000360948.2:c.258G>T	p.Glu86Asp	p.E86D	ENST00000360948	NM_001012338.2	86	gaG/gaT					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18279958	18279958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	88	369	1	ENST00000222254.8:c.2041G>A	p.Glu681Lys	p.E681K	ENST00000222254	NM_005027.3	681	Gag/Aag					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11294274	11294274	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	108	425	0	ENST00000361445.4:c.2257A>T	p.Ser753Cys	p.S753C	ENST00000361445	NM_004958.3	753	Agt/Tgt					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36945094	36945094	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	70	629	1	ENST00000361632.4:c.4G>A	p.Ala2Thr	p.A2T	ENST00000361632		2	Gca/Aca					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29450494	29450494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	187	463	0	ENST00000389048.3:c.2860G>A	p.Asp954Asn	p.D954N	ENST00000389048	NM_004304.4	954	Gat/Aat					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55963857	55963857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	99	529	0	ENST00000263923.4:c.2586C>G	p.Cys862Trp	p.C862W	ENST00000263923	NM_002253.2	862	tgC/tgG					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66233094	66233094	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	49	378	0	ENST00000273854.3:c.1905G>T	p.Met635Ile	p.M635I	ENST00000273854	NM_004439.5	635	atG/atT					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112162900	112162900	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			949	78	450	0	ENST00000257430.4:c.1504G>T	p.Gly502Ter	p.G502*	ENST00000257430	NM_000038.5	502	Gga/Tga					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32178664	32178664	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	144	385	2	ENST00000375023.3:c.2730C>A	p.Ser910Arg	p.S910R	ENST00000375023	NM_004557.3	910	agC/agA					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162394386	162394386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	114	412	0	ENST00000366898.1:c.682C>A	p.Leu228Met	p.L228M	ENST00000366898	NM_004562.2	228	Ctg/Atg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8331710	8331710	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	170	371	1	ENST00000356435.5:c.5406G>T	p.Gln1802His	p.Q1802H	ENST00000356435		1802	caG/caT					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70451483	70451483	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1083	253	519	1	ENST00000373644.4:c.6323A>T	p.Lys2108Ile	p.K2108I	ENST00000373644	NM_030625.2	2108	aAa/aTa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115114216	115114216	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	240	446	1	ENST00000257566.3:c.1001G>T	p.Gly334Val	p.G334V	ENST00000257566	NM_016569.3	334	gGg/gTg					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028644	12028644	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	79	431	1	ENST00000353533.5:c.847G>C	p.Gly283Arg	p.G283R	ENST00000353533	NM_003010.3	283	Gga/Cga					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29559161	29559161	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	51	255	0	ENST00000358273.4:c.3268G>T	p.Gly1090Ter	p.G1090*	ENST00000358273	NM_001042492.2	1090	Gga/Tga					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33793242	33793242	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	21	161	0	ENST00000498907.2:c.79A>C	p.Ser27Arg	p.S27R	ENST00000498907	NM_004364.3	27	Agc/Cgc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790149	40790149	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	73	200	0	ENST00000373198.4:c.2582C>G	p.Thr861Ser	p.T861S	ENST00000373198	NM_133170.3	861	aCc/aGc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944586	40944586	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	81	226	0	ENST00000373198.4:c.1916C>T	p.Ala639Val	p.A639V	ENST00000373198	NM_133170.3	639	gCa/gTa					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29091789	29091789	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	90	279	0	ENST00000328354.6:c.1168T>G	p.Tyr390Asp	p.Y390D	ENST00000328354	NM_007194.3	390	Tac/Gac					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922141	39922141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1409	169	653	2	ENST00000378444.4:c.4031C>T	p.Ala1344Val	p.A1344V	ENST00000378444	NM_001123385.1	1344	gCc/gTc					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123171425	123171425	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010892-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1287	119	525	0	ENST00000218089.9:c.337G>A	p.Ala113Thr	p.A113T	ENST00000218089	NM_001042749.1	113	Gca/Aca					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48878187	48878187	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0014949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			24	211	206	0	ENST00000267163.4:c.137+2T>A		p.X46_splice	ENST00000267163	NM_000321.2	46						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578290	7578290	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0014949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			36	578	629	0	ENST00000269305.4:c.560-1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61713003	61713003	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	103	699	0	ENST00000401558.2:c.2408C>G	p.Thr803Ser	p.T803S	ENST00000401558	NM_003400.3	803	aCt/aGt					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148508768	148508768	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	242	534	0	ENST00000320356.2:c.1896T>A	p.Phe632Leu	p.F632L	ENST00000320356	NM_004456.4	632	ttT/ttA					NEWRECORD																																																																									
WHSC1L1	0	MSKCC	GRCh37	8	38153403	38153403	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			988	124	717	1	ENST00000317025.8:c.2826G>A	p.Met942Ile	p.M942I	ENST00000317025	NM_023034.1	942	atG/atA					NEWRECORD																																																																									
PRDM14	0	MSKCC	GRCh37	8	70978481	70978481	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014949-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	242	427	0	ENST00000276594.2:c.1172G>T	p.Gly391Val	p.G391V	ENST00000276594	NM_024504.3	391	gGg/gTg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0011266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			44	501	246	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0011266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	854	298	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955572	48955572	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			77	532	206	0	ENST00000267163.4:c.1688G>A	p.Trp563Ter	p.W563*	ENST00000267163	NM_000321.2	563	tGg/tAg					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99175959	99175959	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0011266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	1060	429	0	ENST00000074304.5:c.1870+1G>A		p.X624_splice	ENST00000074304	NM_001134224.1	624						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175459	112175459	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			82	712	255	0	ENST00000257430.4:c.4168G>A	p.Val1390Ile	p.V1390I	ENST00000257430	NM_000038.5	1390	Gtc/Atc					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870988	12870988	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	804	299	0	ENST00000228872.4:c.215G>C	p.Gly72Ala	p.G72A	ENST00000228872	NM_004064.3	72	gGc/gCc					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7976471	7976471	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	49	282	0	ENST00000319144.4:c.1921G>C	p.Asp641His	p.D641H	ENST00000319144	NM_001139.2	641	Gac/Cac					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140482852	140482852	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011465-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	83	546	0	ENST00000288602.6:c.1283C>T	p.Ser428Leu	p.S428L	ENST00000288602	NM_004333.4	428	tCa/tTa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	238	404	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119789	70119789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	435	619	0	ENST00000245479.2:c.791G>C	p.Arg264Thr	p.R264T	ENST00000245479	NM_000346.3	264	aGa/aCa					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120462920	120462920	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	255	462	1	ENST00000256646.2:c.5411C>T	p.Ser1804Leu	p.S1804L	ENST00000256646	NM_024408.3	1804	tCg/tTg					NEWRECORD																																																																									
TNFRSF14	0	MSKCC	GRCh37	1	2489186	2489186	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1330	173	682	0	ENST00000355716.4:c.91G>A	p.Gly31Arg	p.G31R	ENST00000355716	NM_003820.2	31	Gga/Aga					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36941097	36941097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1906	215	917	0	ENST00000361632.4:c.242G>A	p.Gly81Glu	p.G81E	ENST00000361632		81	gGg/gAg					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89462410	89462410	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1280	99	381	0	ENST00000336596.2:c.1882G>A	p.Gly628Arg	p.G628R	ENST00000336596	NM_005233.5	628	Gga/Aga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578469	7578474	+	inframe_deletion	In_Frame_Del	DEL	CCGGGC	CCGGGC	-			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	215	469	0	ENST00000269305.4:c.456_461del	p.Pro153_Gly154del	p.P153_G154del	ENST00000269305	NM_001126112.2	152	ccGCCCGGc/ccc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29667589	29667589	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1031	418	693	0	ENST00000358273.4:c.6989del	p.Leu2330CysfsTer16	p.L2330Cfs*16	ENST00000358273	NM_001042492.2	2330	Ttg/tg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971123	21971123	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	124	262	0	ENST00000304494.5:c.235del	p.Thr79ProfsTer67	p.T79Pfs*67	ENST00000304494	NM_000077.4	79	Acc/cc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971123	21971123	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	124	262	0	ENST00000304494.5:c.235del	p.Thr79ProfsTer67	p.T79Pfs*67	ENST00000304494	NM_000077.4	79	Acc/cc					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971123	21971123	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010973-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	124	262	0	ENST00000304494.5:c.235del	p.Thr79ProfsTer67	p.T79Pfs*67	ENST00000304494	NM_000077.4	79	Acc/cc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0010014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	165	393	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604665	48604665	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	47	382	0	ENST00000342988.3:c.1487G>A	p.Arg496His	p.R496H	ENST00000342988	NM_005359.5	496	cGt/cAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175822	112175823	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			P-0010014-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	106	362	0	ENST00000257430.4:c.4532_4533del	p.Leu1511ArgfsTer2	p.L1511Rfs*2	ENST00000257430	NM_000038.5	1511	CTc/c					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578202	7578202	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	72	487	0	ENST00000269305.4:c.647T>G	p.Val216Gly	p.V216G	ENST00000269305	NM_001126112.2	216	gTg/gGg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10599875	10599875	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010789-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	66	446	0	ENST00000171111.5:c.1701C>A	p.Tyr567Ter	p.Y567*	ENST00000171111	NM_203500.1	567	taC/taA					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	1242	557	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	61	319	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023408	31023408	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012393-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	105	470	0	ENST00000375687.4:c.2893C>T	p.Arg965Ter	p.R965*	ENST00000375687	NM_015338.5	965	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	473	345	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175255	112175255	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	168	276	0	ENST00000257430.4:c.3964G>T	p.Glu1322Ter	p.E1322*	ENST00000257430	NM_000038.5	1322	Gaa/Taa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70355083	70355083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	641	358	0	ENST00000374080.3:c.5005G>A	p.Asp1669Asn	p.D1669N	ENST00000374080		1669	Gat/Aat					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175143	112175143	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	116	195	0	ENST00000257430.4:c.3852A>T	p.Glu1284Asp	p.E1284D	ENST00000257430	NM_000038.5	1284	gaA/gaT					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056263	26056263	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1489	212	476	0	ENST00000343677.2:c.394G>C	p.Val132Leu	p.V132L	ENST00000343677	NM_005319.3	132	Gtt/Ctt					NEWRECORD																																																																									
CDKN2B	0	MSKCC	GRCh37	9	22006224	22006224	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	143	163	0	ENST00000276925.6:c.179del	p.Arg60ProfsTer105	p.R60Pfs*105	ENST00000276925	NM_004936.3	60	cGc/cc					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114710609	114710609	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010422-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2087	394	959	0	ENST00000543371.1:c.94del	p.Ser32ProfsTer10	p.S32Pfs*10	ENST00000543371	NM_001198531.1	32	Tcc/cc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003101-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			22	651	337	0	ENST00000371953.3:c.389G>A	p.Arg130Gln	p.R130Q	ENST00000371953	NM_000314.4	130	cGa/cAa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857047	9857047	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003101-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			671	574	612	1	ENST00000330684.3:c.4354C>T	p.Arg1452Cys	p.R1452C	ENST00000330684	NM_001134407.1	1452	Cgc/Tgc					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138417868	138417868	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0003101-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			593	519	522	0	ENST00000289153.2:c.1651T>C	p.Cys551Arg	p.C551R	ENST00000289153	NM_006219.2	551	Tgt/Cgt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48881505	48881505	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0003101-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			28	580	458	0	ENST00000267163.4:c.227T>G	p.Leu76Ter	p.L76*	ENST00000267163	NM_000321.2	76	tTa/tGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577043	7577046	+	frameshift_variant	Frame_Shift_Del	DEL	GCTC	GCTC	-			P-0003101-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			24	589	529	1	ENST00000269305.4:c.892_895delGAGC	p.Glu298CysfsTer46	p.E298Cfs*46	ENST00000269305	NM_001126112.2	298	GAGCtg/tg					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32450145	32450145	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	36	524	0	ENST00000332351.3:c.667G>A	p.Asp223Asn	p.D223N	ENST00000332351	NM_024426.4	223	Gac/Aac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			902	451	600	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49427090	49427090	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	250	497	0	ENST00000301067.7:c.11398G>A	p.Gly3800Ser	p.G3800S	ENST00000301067	NM_003482.3	3800	Ggc/Agc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577017	7577017	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0014610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			348	369	691	1	ENST00000269305.4:c.919+2T>A		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61717854	61717855	+	missense_variant	Missense_Mutation	DNP	CT	CT	AA			P-0014610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	200	665	0	ENST00000401558.2:c.1944_1945delinsTT	p.Val649Leu	p.V649L	ENST00000401558	NM_003400.3	648	acAGta/acTTta					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26031954	26031954	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014610-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			507	80	291	0	ENST00000244661.2:c.335C>G	p.Ala112Gly	p.A112G	ENST00000244661	NM_003537.3	112	gCc/gGc					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176520273	176520273	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			463	32	617	0	ENST00000292408.4:c.1192C>T	p.Arg398Trp	p.R398W	ENST00000292408	NM_213647.1	398	Cgg/Tgg					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116412023	116412023	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014688-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			910	102	722	0	ENST00000397752.3:c.3008A>T	p.Tyr1003Phe	p.Y1003F	ENST00000397752	NM_000245.2	1003	tAc/tTc					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9782363	9782363	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	80	518	1	ENST00000377346.4:c.2296G>A	p.Glu766Lys	p.E766K	ENST00000377346	NM_005026.3	766	Gag/Aag					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16262537	16262537	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200479229		P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	79	363	0	ENST00000375759.3:c.9802C>T	p.Arg3268Cys	p.R3268C	ENST00000375759	NM_015001.2	3268	Cgt/Tgt					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46726628	46726629	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	50	512	0	ENST00000371975.4:c.707_708delinsAA	p.Gly236Glu	p.G236E	ENST00000371975	NM_003579.3	236	gGG/gAA					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120510161	120510161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	85	460	1	ENST00000256646.2:c.1348G>A	p.Gly450Arg	p.G450R	ENST00000256646	NM_024408.3	450	Gga/Aga					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162729669	162729669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	78	442	0	ENST00000367921.3:c.755C>T	p.Pro252Leu	p.P252L	ENST00000367921	NM_006182.2	252	cCc/cTc					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25468901	25468901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	92	504	0	ENST00000264709.3:c.1462C>T	p.Arg488Trp	p.R488W	ENST00000264709	NM_175629.2	488	Cgg/Tgg					NEWRECORD																																																																									
GSK3B	0	MSKCC	GRCh37	3	119720937	119720937	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	91	557	2	ENST00000316626.5:c.238G>A	p.Glu80Lys	p.E80K	ENST00000316626		80	Gaa/Aaa					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134873003	134873003	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	64	444	0	ENST00000398015.3:c.1307C>T	p.Thr436Ile	p.T436I	ENST00000398015	NM_004441.4	436	aCc/aTc					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142278254	142278254	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	55	319	0	ENST00000350721.4:c.1571C>T	p.Ser524Phe	p.S524F	ENST00000350721	NM_001184.3	524	tCc/tTc					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189526232	189526232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	127	608	0	ENST00000264731.3:c.496C>T	p.Pro166Ser	p.P166S	ENST00000264731	NM_003722.4	166	Ccc/Tcc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55981492	55981492	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	73	494	2	ENST00000263923.4:c.445C>T	p.Pro149Ser	p.P149S	ENST00000263923	NM_002253.2	149	Cca/Tca					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	40	331	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117737447	117737447	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	55	434	1	ENST00000368508.3:c.202G>A	p.Asp68Asn	p.D68N	ENST00000368508	NM_002944.2	68	Gat/Aat					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13946081	13946081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	29	325	0	ENST00000405192.2:c.1015G>A	p.Glu339Lys	p.E339K	ENST00000405192	NM_001163147.1	339	Gaa/Aaa					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81346608	81346608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	51	511	0	ENST00000222390.5:c.1345G>A	p.Gly449Arg	p.G449R	ENST00000222390	NM_000601.4	449	Gga/Aga					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8636728	8636728	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	120	281	0	ENST00000356435.5:c.181G>A	p.Gly61Arg	p.G61R	ENST00000356435		61	Gga/Aga					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135772038	135772038	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	103	158	0	ENST00000298552.3:c.3079C>T	p.Arg1027Trp	p.R1027W	ENST00000298552	NM_001162426.1	1027	Cgg/Tgg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412375	139412375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	256	367	0	ENST00000277541.6:c.1270G>A	p.Glu424Lys	p.E424K	ENST00000277541	NM_017617.3	424	Gag/Aag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108224540	108224540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	69	436	0	ENST00000278616.4:c.8719C>T	p.Pro2907Ser	p.P2907S	ENST00000278616	NM_000051.3	2907	Cct/Tct					NEWRECORD																																																																									
SMARCD1	0	MSKCC	GRCh37	12	50484039	50484039	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			757	74	473	0	ENST00000394963.4:c.889T>G	p.Leu297Val	p.L297V	ENST00000394963	NM_003076.4	297	Tta/Gta					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112891141	112891141	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	57	456	1	ENST00000351677.2:c.475G>A	p.Glu159Lys	p.E159K	ENST00000351677	NM_002834.3	159	Gag/Aag					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28626775	28626775	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	73	499	0	ENST00000241453.7:c.521G>A	p.Arg174Lys	p.R174K	ENST00000241453	NM_004119.2	174	aGa/aAa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48878154	48878154	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	31	163	0	ENST00000267163.4:c.106G>A	p.Asp36Asn	p.D36N	ENST00000267163	NM_000321.2	36	Gac/Aac					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42003213	42003213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	77	721	3	ENST00000219905.7:c.2750C>T	p.Ser917Phe	p.S917F	ENST00000219905	NM_001164273.1	917	tCc/tTc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88420332	88420332	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	49	308	0	ENST00000360948.2:c.2354A>G	p.Gln785Arg	p.Q785R	ENST00000360948	NM_001012338.2	785	cAa/cGa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2125839	2125839	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	117	657	2	ENST00000219476.3:c.2585C>T	p.Ala862Val	p.A862V	ENST00000219476	NM_000548.3	862	gCg/gTg					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56867301	56867301	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	90	486	0	ENST00000308159.5:c.1520G>A	p.Gly507Glu	p.G507E	ENST00000308159	NM_014669.4	507	gGa/gAa					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56868166	56868166	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	98	680	2	ENST00000308159.5:c.1664G>A	p.Arg555Lys	p.R555K	ENST00000308159	NM_014669.4	555	aGg/aAg					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81973514	81973514	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	65	470	0	ENST00000359376.3:c.3331C>T	p.Pro1111Ser	p.P1111S	ENST00000359376	NM_002661.3	1111	Cct/Tct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577547	7577548	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	60	489	0	ENST00000269305.4:c.733_734delinsAT	p.Gly245Ile	p.G245I	ENST00000269305	NM_001126112.2	245	GGc/ATc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16004792	16004792	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	79	534	0	ENST00000268712.3:c.2462C>T	p.Ser821Phe	p.S821F	ENST00000268712	NM_006311.3	821	tCt/tTt					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38512368	38512369	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	36	359	2	ENST00000254066.5:c.1279_1280delinsTT	p.Pro427Leu	p.P427L	ENST00000254066	NM_000964.3	427	CCg/TTg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119723	70119723	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	83	563	0	ENST00000245479.2:c.725A>C	p.Lys242Thr	p.K242T	ENST00000245479	NM_000346.3	242	aAa/aCa					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56400704	56400704	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			827	66	729	1	ENST00000348428.3:c.1298C>T	p.Pro433Leu	p.P433L	ENST00000348428	NM_006785.3	433	cCa/cTa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5222990	5222990	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	60	273	0	ENST00000357368.4:c.2813C>T	p.Ala938Val	p.A938V	ENST00000357368	NM_002850.3	938	gCc/gTc					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10270437	10270437	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	76	469	0	ENST00000340748.4:c.1129G>T	p.Glu377Ter	p.E377*	ENST00000340748		377	Gag/Tag					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15288502	15288502	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	27	145	0	ENST00000263388.2:c.4237G>A	p.Asp1413Asn	p.D1413N	ENST00000263388	NM_000435.2	1413	Gac/Aac					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30308137	30308137	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	63	550	0	ENST00000262643.3:c.274T>A	p.Cys92Ser	p.C92S	ENST00000262643	NM_001238.2	92	Tgc/Agc					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44514826	44514826	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	92	509	0	ENST00000291552.4:c.421C>T	p.His141Tyr	p.H141Y	ENST00000291552	NM_006758.2	141	Cac/Tac					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30032794	30032794	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	136	519	0	ENST00000338641.4:c.169C>T	p.Arg57Ter	p.R57*	ENST00000338641	NM_000268.3	57	Cga/Tga					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974793	21974793	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	62	200	0	ENST00000304494.5:c.34del	p.Ser12ArgfsTer14	p.S12Rfs*14	ENST00000304494	NM_000077.4	12	Tcg/cg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974793	21974793	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	62	200	0	ENST00000304494.5:c.34del	p.Ser12ArgfsTer14	p.S12Rfs*14	ENST00000304494	NM_000077.4	12	Tcg/cg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579433	7579433	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1064793279		P-0012455-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	84	433	0	ENST00000269305.4:c.254del	p.Pro85LeufsTer38	p.P85Lfs*38	ENST00000269305	NM_001126112.2	85	cCt/ct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	142	328	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005117	150005117	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs56348064		P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			674	53	369	0	ENST00000253339.5:c.1108C>T	p.Arg370Trp	p.R370W	ENST00000253339		370	Cgg/Tgg					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149495510	149495510	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	93	575	0	ENST00000261799.4:c.3138-1G>T		p.X1046_splice	ENST00000261799	NM_002609.3	1046						NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90995024	90995024	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	61	354	1	ENST00000265433.3:c.97A>T	p.Ile33Phe	p.I33F	ENST00000265433	NM_002485.4	33	Att/Ttt					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139399273	139399273	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	47	414	0	ENST00000277541.6:c.4870G>T	p.Glu1624Ter	p.E1624*	ENST00000277541	NM_017617.3	1624	Gag/Tag					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17742873	17742873	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	81	304	0	ENST00000250003.3:c.781A>T	p.Thr261Ser	p.T261S	ENST00000250003	NM_002478.4	261	Acc/Tcc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118307610	118307610	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	77	200	0	ENST00000534358.1:c.383G>T	p.Arg128Leu	p.R128L	ENST00000534358	NM_005933.3	128	cGg/cTg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28895610	28895610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	147	443	0	ENST00000282397.4:c.3164G>A	p.Arg1055Lys	p.R1055K	ENST00000282397	NM_002019.4	1055	aGa/aAa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28895675	28895675	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	148	484	1	ENST00000282397.4:c.3099C>A	p.Asn1033Lys	p.N1033K	ENST00000282397	NM_002019.4	1033	aaC/aaA					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3820681	3820681	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	75	429	0	ENST00000262367.5:c.2770G>T	p.Ala924Ser	p.A924S	ENST00000262367	NM_004380.2	924	Gcc/Tcc					NEWRECORD																																																																									
CCNE1	0	MSKCC	GRCh37	19	30313358	30313358	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1073	58	476	1	ENST00000262643.3:c.958C>T	p.Gln320Ter	p.Q320*	ENST00000262643	NM_001238.2	320	Cag/Tag					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45858020	45858020	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	461	471	0	ENST00000391945.4:c.1633A>G	p.Met545Val	p.M545V	ENST00000391945	NM_000400.3	545	Atg/Gtg					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29095926	29095926	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	92	397	0	ENST00000328354.6:c.909-1G>T		p.X303_splice	ENST00000328354	NM_007194.3	303						NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47028847	47028847	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011157-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	84	275	0	ENST00000329236.7:c.151C>T	p.Gln51Ter	p.Q51*	ENST00000329236	NM_001204466.1	51	Cag/Tag					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0014230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			339	21	277	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			355	23	298	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56478786	56478786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	73	512	0	ENST00000267101.3:c.242G>A	p.Arg81Gln	p.R81Q	ENST00000267101	NM_001982.3	81	cGa/cAa					NEWRECORD																																																																									
RRAS2	0	MSKCC	GRCh37	11	14380350	14380350	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	91	393	1	ENST00000256196.4:c.67G>A	p.Gly23Ser	p.G23S	ENST00000256196		23	Ggc/Agc					NEWRECORD																																																																									
MSI1	0	MSKCC	GRCh37	12	120783952	120783952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	89	585	1	ENST00000257552.2:c.1033G>A	p.Gly345Ser	p.G345S	ENST00000257552	NM_002442.3	345	Ggc/Agc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42797127	42797127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	134	881	0	ENST00000575354.2:c.3489C>G	p.Ser1163Arg	p.S1163R	ENST00000575354	NM_015125.3	1163	agC/agG					NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67591148	67591154	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	TTGATGT	TTGATGT	-			P-0014230-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	49	306	0	ENST00000274335.5:c.1741_1745+2del		p.X581_splice	ENST00000274335		581						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0012779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	365	565	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	216	551	0	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	416168	416168	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1179	86	623	0	ENST00000399788.2:c.4018G>A	p.Asp1340Asn	p.D1340N	ENST00000399788	NM_001042603.1	1340	Gat/Aat					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29661910	29661910	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	265	374	0	ENST00000358273.4:c.5867T>G	p.Leu1956Arg	p.L1956R	ENST00000358273	NM_001042492.2	1956	cTa/cGa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556454	29556457	+	frameshift_variant	Frame_Shift_Del	DEL	ATCA	ATCA	-			P-0012779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	54	264	0	ENST00000358273.4:c.2821_2824del	p.Ile941AlafsTer12	p.I941Afs*12	ENST00000358273	NM_001042492.2	941	ATCAgc/gc					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46271054	46271057	+	missense_variant	Missense_Mutation	ONP	CTTC	CTTC	TTTT			P-0012779-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	81	757	0	ENST00000371998.3:c.3178_3181delinsTTTT	p.Leu1060_Leu1061delinsPhePhe	p.L1060_L1061delinsFF	ENST00000371998		1060	CTTCtc/TTTTtc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0012555-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	221	373	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1474	55	918	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061216	38061230	+	inframe_deletion	In_Frame_Del	DEL	CAGCCGTTCTCGAAC	CAGCCGTTCTCGAAC	-			P-0011437-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	53	524	0	ENST00000250448.2:c.759_773del	p.Met253_Cys258delinsIle	p.M253_C258delinsI	ENST00000250448	NM_004496.3	253	atGTTCGAGAACGGCTGc/atc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0012222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			92	43	343	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120480627	120480627	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	51	341	0	ENST00000256646.2:c.3190G>T	p.Val1064Leu	p.V1064L	ENST00000256646	NM_024408.3	1064	Gtg/Ttg					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028662	12028662	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			90	135	609	1	ENST00000353533.5:c.865G>A	p.Asp289Asn	p.D289N	ENST00000353533	NM_003010.3	289	Gat/Aat					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70349704	70349704	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0012222-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	91	696	1	ENST00000374080.3:c.3866A>T	p.Gln1289Leu	p.Q1289L	ENST00000374080		1289	cAg/cTg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	77	356	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
KDR	3791	MSKCC	GRCh37	4	55956220	55956220	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1190050670		P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	142	592	1	ENST00000263923.4:c.3095G>A	p.Arg1032Gln	p.R1032Q	ENST00000263923	NM_002253.2	1032	cGa/cAa					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851747	134851747	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	118	514	1	ENST00000398015.3:c.1153G>A	p.Gly385Ser	p.G385S	ENST00000398015	NM_004441.4	385	Ggc/Agc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453145	140453145	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	185	420	2	ENST00000288602.6:c.1790T>C	p.Leu597Pro	p.L597P	ENST00000288602	NM_004333.4	597	cTa/cCa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29653166	29653166	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	47	410	0	ENST00000358273.4:c.5164G>A	p.Glu1722Lys	p.E1722K	ENST00000358273	NM_001042492.2	1722	Gaa/Aaa					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40366709	40366709	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	64	372	0	ENST00000397332.2:c.488C>A	p.Pro163His	p.P163H	ENST00000397332	NM_001033082.2	163	cCc/cAc					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226567276	226567276	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	63	444	0	ENST00000366794.5:c.1610C>T	p.Ser537Phe	p.S537F	ENST00000366794	NM_001618.3	537	tCt/tTt					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247240	153247240	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	148	748	0	ENST00000281708.4:c.1562T>A	p.Phe521Tyr	p.F521Y	ENST00000281708	NM_033632.3	521	tTt/tAt					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26031885	26031885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	135	727	1	ENST00000244661.2:c.404G>A	p.Arg135Lys	p.R135K	ENST00000244661	NM_003537.3	135	aGa/aAa					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81392167	81392167	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	95	478	0	ENST00000222390.5:c.110A>G	p.Asn37Ser	p.N37S	ENST00000222390	NM_000601.4	37	aAt/aGt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140494164	140494164	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	364	708	0	ENST00000288602.6:c.1084C>G	p.Arg362Gly	p.R362G	ENST00000288602	NM_004333.4	362	Cga/Gga					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108155093	108155093	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	98	480	0	ENST00000278616.4:c.3886C>T	p.Pro1296Ser	p.P1296S	ENST00000278616	NM_000051.3	1296	Cct/Tct					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	402008	402008	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	171	825	0	ENST00000399788.2:c.4783T>G	p.Tyr1595Asp	p.Y1595D	ENST00000399788	NM_001042603.1	1595	Tat/Gat					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81969779	81969779	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	145	795	1	ENST00000359376.3:c.2848C>T	p.Pro950Ser	p.P950S	ENST00000359376	NM_002661.3	950	Cct/Tct					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164797	36164797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	89	555	1	ENST00000300305.3:c.1078G>A	p.Val360Ile	p.V360I	ENST00000300305		360	Gtc/Atc					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7216555	7216556	+	missense_variant	Missense_Mutation	DNP	GT	GT	AA			P-0012408-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1316	179	974	1	ENST00000380728.2:c.779_780delinsTT	p.Asn260Ile	p.N260I	ENST00000380728		260	aAC/aTT					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533874	533874	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	455	507	0	ENST00000311189.7:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000311189		61	cAg/cGg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49438703	49438703	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	437	499	0	ENST00000301067.7:c.4787del	p.Gly1596AlafsTer8	p.G1596Afs*8	ENST00000301067	NM_003482.3	1596	gGc/gc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579324	7579325	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	197	392	0	ENST00000269305.4:c.362_363del	p.Ser121CysfsTer27	p.S121Cfs*27	ENST00000269305	NM_001126112.2	121	tCT/t					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227662313	227662313	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013526-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			255	266	376	0	ENST00000305123.5:c.1142G>C	p.Arg381Pro	p.R381P	ENST00000305123	NM_005544.2	381	cGc/cCc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0012502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	40	320	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183635	10183635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	52	505	0	ENST00000256474.2:c.104C>A	p.Ala35Asp	p.A35D	ENST00000256474	NM_000551.3	35	gCc/gAc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436429	110436430	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0012502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			777	67	400	0	ENST00000375856.3:c.1971_1972delinsAA	p.Pro658Thr	p.P658T	ENST00000375856	NM_003749.2	657	acGCcc/acAAcc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828513	72828513	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1271	96	804	0	ENST00000268489.5:c.8068C>A	p.Gln2690Lys	p.Q2690K	ENST00000268489	NM_006885.3	2690	Cag/Aag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72829810	72829810	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	96	867	0	ENST00000268489.5:c.6771A>C	p.Leu2257Phe	p.L2257F	ENST00000268489	NM_006885.3	2257	ttA/ttC					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339933	70339933	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012502-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	63	762	0	ENST00000374080.3:c.466G>C	p.Ala156Pro	p.A156P	ENST00000374080		156	Gct/Cct					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123179165	123179165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014417-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	19	246	0	ENST00000218089.9:c.614C>G	p.Thr205Arg	p.T205R	ENST00000218089	NM_001042749.1	205	aCa/aGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0003198-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			461	49	404	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180039583	180039583	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs75614493		P-0003198-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			709	47	462	1	ENST00000261937.6:c.3460G>A	p.Gly1154Arg	p.G1154R	ENST00000261937	NM_182925.4	1154	Gga/Aga					NEWRECORD																																																																									
IKZF1	10320	MSKCC	GRCh37	7	50468158	50468158	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003198-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			413	24	314	0	ENST00000331340.3:c.1393G>A	p.Glu465Lys	p.E465K	ENST00000331340	NM_006060.4	465	Gaa/Aaa					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70426988	70426988	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0003198-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			480	27	324	0	ENST00000373644.4:c.4648G>T	p.Asp1550Tyr	p.D1550Y	ENST00000373644	NM_030625.2	1550	Gac/Tac					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103514889	103514889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0003198-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			550	59	321	0	ENST00000355739.4:c.1390G>A	p.Gly464Arg	p.G464R	ENST00000355739	NM_000123.3	464	Ggg/Agg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	26	394	0	ENST00000269305.4:c.535C>A	p.His179Asn	p.H179N	ENST00000269305	NM_001126112.2	179	Cat/Aat					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247250	153247263	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCACTAACAACC	CTCCACTAACAACC	-			P-0013962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	72	614	0	ENST00000281708.4:c.1539_1552del	p.Arg513SerfsTer3	p.R513Sfs*3	ENST00000281708	NM_033632.3	513	agGGTTGTTAGTGGAGca/agca					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41739843	41739843	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	119	700	0	ENST00000242208.4:c.130C>A	p.Pro44Thr	p.P44T	ENST00000242208	NM_002192.2	44	Cca/Aca					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741391	145741391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1006	56	724	1	ENST00000428558.2:c.1112G>C	p.Ser371Thr	p.S371T	ENST00000428558	NM_004260.3	371	aGc/aCc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47038830	47038830	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013962-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	26	272	0	ENST00000329236.7:c.606G>T	p.Gln202His	p.Q202H	ENST00000329236	NM_001204466.1	202	caG/caT					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	116	232	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17951135	17951135	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	221	659	0	ENST00000458235.1:c.1158C>G	p.Ile386Met	p.I386M	ENST00000458235	NM_000215.3	386	atC/atG					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs1057519989		P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	266	654	0	ENST00000269305.4:c.730G>T	p.Gly244Cys	p.G244C	ENST00000269305	NM_001126112.2	244	Ggc/Tgc					NEWRECORD																																																																									
SDHB	0	MSKCC	GRCh37	1	17355174	17355174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	239	671	2	ENST00000375499.3:c.344G>A	p.Arg115Gln	p.R115Q	ENST00000375499	NM_003000.2	115	cGa/cAa					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8097742	8097743	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			755	104	602	1	ENST00000346208.3:c.124_125delinsAA	p.Pro42Lys	p.P42K	ENST00000346208		42	CCg/AAg					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12016564	12016564	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			277	122	304	0	ENST00000353533.5:c.700A>T	p.Asn234Tyr	p.N234Y	ENST00000353533	NM_003010.3	234	Aat/Tat					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55153603	55153603	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			362	163	403	0	ENST00000257290.5:c.2569C>G	p.Leu857Val	p.L857V	ENST00000257290	NM_006206.4	857	Ctg/Gtg					NEWRECORD																																																																									
FAM175A	0	MSKCC	GRCh37	4	84393388	84393388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	37	347	1	ENST00000321945.7:c.269C>T	p.Ser90Leu	p.S90L	ENST00000321945	NM_139076.2	90	tCa/tTa					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117859844	117859844	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			456	145	323	0	ENST00000297338.2:c.1791C>G	p.Phe597Leu	p.F597L	ENST00000297338	NM_006265.2	597	ttC/ttG					NEWRECORD																																																																									
RXRA	0	MSKCC	GRCh37	9	137313610	137313610	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014317-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			945	67	725	0	ENST00000481739.1:c.869C>G	p.Ser290Ter	p.S290*	ENST00000481739	NM_002957.4	290	tCa/tGa					NEWRECORD																																																																									
TAP1	0	MSKCC	GRCh37	6	32814943	32814943	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	477	671	3	ENST00000354258.4:c.2122C>T	p.Arg708Ter	p.R708*	ENST00000354258	NM_000593.5	708	Cga/Tga					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139418311	139418311	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014336-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1108	568	901	0	ENST00000277541.6:c.261C>A	p.Cys87Ter	p.C87*	ENST00000277541	NM_017617.3	87	tgC/tgA					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27840053	27840053	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013825-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	131	956	3	ENST00000328488.2:c.41G>A	p.Gly14Asp	p.G14D	ENST00000328488	NM_003533.2	14	gGc/gAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0012321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	35	474	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	55	847	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927977	178927988	+	inframe_deletion	In_Frame_Del	DEL	CACTGTCCATTG	CACTGTCCATTG	-			P-0012321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	40	288	0	ENST00000263967.3:c.1255_1266del	p.His419_Leu422del	p.H419_L422del	ENST00000263967	NM_006218.2	419	CACTGTCCATTG/-					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685234	89685268	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TAATGGTGGCTTTTTGTTTGTTTGTTTTGTTTTAA	TAATGGTGGCTTTTTGTTTGTTTGTTTTGTTTTAA	-			P-0012321-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	38	157	0	ENST00000371953.3:c.165-36_165-2del		p.X55_splice	ENST00000371953	NM_000314.4	55						NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	185	421	0	ENST00000369535.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000369535	NM_002524.4	12	gGt/gCt					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	218514	218514	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014236-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			151	70	121	0	ENST00000264932.6:c.44G>A	p.Arg15His	p.R15H	ENST00000264932	NM_004168.2	15	cGc/cAc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55981509	55981509	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	174	515	0	ENST00000263923.4:c.428A>G	p.Asn143Ser	p.N143S	ENST00000263923	NM_002253.2	143	aAc/aGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	346	567	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113296	209113296	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs73070954		P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1028	167	511	2	ENST00000345146.2:c.211G>A	p.Val71Ile	p.V71I	ENST00000345146	NM_005896.2	71	Gtc/Atc					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12633229	12633229	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	291	437	0	ENST00000251849.4:c.1171A>T	p.Arg391Trp	p.R391W	ENST00000251849	NM_002880.3	391	Agg/Tgg					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128038173	128038173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	277	460	0	ENST00000285398.2:c.1377G>T	p.Gln459His	p.Q459H	ENST00000285398	NM_000122.1	459	caG/caT					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47058687	47058687	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	313	444	3	ENST00000409792.3:c.7591G>T	p.Glu2531Ter	p.E2531*	ENST00000409792	NM_014159.6	2531	Gag/Tag					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128200073	128200073	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	152	595	0	ENST00000341105.2:c.1232C>A	p.Ala411Glu	p.A411E	ENST00000341105	NM_032638.4	411	gCg/gAg					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180053165	180053165	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	231	579	0	ENST00000261937.6:c.1204T>A	p.Trp402Arg	p.W402R	ENST00000261937	NM_182925.4	402	Tgg/Agg					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741937	145741937	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	78	357	0	ENST00000428558.2:c.566G>C	p.Gly189Ala	p.G189A	ENST00000428558	NM_004260.3	189	gGc/gCc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518346	8518346	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	95	206	0	ENST00000356435.5:c.1045G>C	p.Glu349Gln	p.E349Q	ENST00000356435		349	Gag/Cag					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98229650	98229650	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	71	305	2	ENST00000331920.6:c.2308C>T	p.Arg770Ter	p.R770*	ENST00000331920	NM_000264.3	770	Cga/Tga					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49445443	49445443	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	127	490	0	ENST00000301067.7:c.2023C>T	p.Pro675Ser	p.P675S	ENST00000301067	NM_003482.3	675	Cct/Tct					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49448762	49448762	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	136	404	0	ENST00000301067.7:c.97C>G	p.Leu33Val	p.L33V	ENST00000301067	NM_003482.3	33	Ctg/Gtg					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28626755	28626755	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	320	428	3	ENST00000241453.7:c.541G>A	p.Ala181Thr	p.A181T	ENST00000241453	NM_004119.2	181	Gcc/Acc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28631600	28631600	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	83	319	0	ENST00000241453.7:c.369-1G>A		p.X123_splice	ENST00000241453	NM_004119.2	123						NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3778560	3778560	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			859	257	602	1	ENST00000262367.5:c.6488G>T	p.Gly2163Val	p.G2163V	ENST00000262367	NM_004380.2	2163	gGc/gTc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72829454	72829454	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1186	129	811	2	ENST00000268489.5:c.7127C>T	p.Thr2376Met	p.T2376M	ENST00000268489	NM_006885.3	2376	aCg/aTg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89836284	89836284	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	188	519	0	ENST00000389301.3:c.2465T>A	p.Leu822Gln	p.L822Q	ENST00000389301	NM_000135.2	822	cTg/cAg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29652932	29652932	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	355	469	1	ENST00000358273.4:c.4930G>T	p.Asp1644Tyr	p.D1644Y	ENST00000358273	NM_001042492.2	1644	Gac/Tac					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151853131	151853829	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGTTTTGGTAACTGGAAAAGCAAAAACACAAAACCATAAATACATTCAGTCAATATTGATAAATGGGTAGAACTTTACAATTCTATTGCCATTTCACAATACACAACTGGCAGAGGCACATTTCTCCGAGGTGTGAAATTTGGAGGCTATAATCATACCTTCATGGCTCACTAACACTCCGGCTTTTCCAGCAAGTTCTTCAGTTGTTGCAAAACCATTGGCCATCTTCTGACAAGCCATAGGAGGTGGTGTAGGAGGAAGAGAGGCAGGGGGTGTTGGAGGATTACTTAAATTATTCTGCTGCAGGAGACCAAAAAATTTAAATTATATGCTACTGAGCGAATATGCAATGACCTTGCTAAAACGTAGTTCTGTGAATTTTTTGCACATAGAAGCAAGGCTACAGAAATGTAATCAAGATGTATCTTGCACACCAAGAAAACAATACCTACAAGGCCAGGAGGCTTCTTAGTGGAACAGATACTCGTGATTTTATGGACATACCAACTTGCTTACTTTACCCAGCTTGACTACTTAAGCTCTGAAATTAAGAAGCTAATTTCCTTTCTACCTGATTTTATTTATGCAATTCTTCAAGTTTCGTGGTTATAGCTAGTGAAGGATAACTTTAAAATGCAATCAAGAAATTGCAAAATATTATCAAAATATCCTTTAAGTTCTCATTAAGATATGCCCTA	GAGTTTTGGTAACTGGAAAAGCAAAAACACAAAACCATAAATACATTCAGTCAATATTGATAAATGGGTAGAACTTTACAATTCTATTGCCATTTCACAATACACAACTGGCAGAGGCACATTTCTCCGAGGTGTGAAATTTGGAGGCTATAATCATACCTTCATGGCTCACTAACACTCCGGCTTTTCCAGCAAGTTCTTCAGTTGTTGCAAAACCATTGGCCATCTTCTGACAAGCCATAGGAGGTGGTGTAGGAGGAAGAGAGGCAGGGGGTGTTGGAGGATTACTTAAATTATTCTGCTGCAGGAGACCAAAAAATTTAAATTATATGCTACTGAGCGAATATGCAATGACCTTGCTAAAACGTAGTTCTGTGAATTTTTTGCACATAGAAGCAAGGCTACAGAAATGTAATCAAGATGTATCTTGCACACCAAGAAAACAATACCTACAAGGCCAGGAGGCTTCTTAGTGGAACAGATACTCGTGATTTTATGGACATACCAACTTGCTTACTTTACCCAGCTTGACTACTTAAGCTCTGAAATTAAGAAGCTAATTTCCTTTCTACCTGATTTTATTTATGCAATTCTTCAAGTTTCGTGGTTATAGCTAGTGAAGGATAACTTTAAAATGCAATCAAGAAATTGCAAAATATTATCAAAATATCCTTTAAGTTCTCATTAAGATATGCCCTA	-			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	40	208	0	ENST00000262189.6:c.11671-394_11828del		p.X3891_splice	ENST00000262189	NM_170606.2	3891						NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31021158	31021159	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0012203-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	166	511	0	ENST00000375687.4:c.1162_1163del	p.Val388ProfsTer21	p.V388Pfs*21	ENST00000375687	NM_015338.5	386	tTG/t					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	130	561	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602737	10602737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			705	165	850	0	ENST00000171111.5:c.841C>A	p.Leu281Met	p.L281M	ENST00000171111	NM_203500.1	281	Ctg/Atg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221954	1221954	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			908	217	867	0	ENST00000326873.7:c.869T>G	p.Leu290Arg	p.L290R	ENST00000326873	NM_000455.4	290	cTt/cGt					NEWRECORD																																																																									
CARM1	0	MSKCC	GRCh37	19	10982436	10982436	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			62	14	55	0	ENST00000327064.4:c.58C>A	p.Pro20Thr	p.P20T	ENST00000327064	NM_199141.1	20	Ccg/Acg					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66213898	66213898	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	57	454	0	ENST00000273854.3:c.2532G>T	p.Trp844Cys	p.W844C	ENST00000273854	NM_004439.5	844	tgG/tgT					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372299	55372299	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015021-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			987	106	873	0	ENST00000297316.4:c.989C>A	p.Pro330His	p.P330H	ENST00000297316	NM_022454.3	330	cCc/cAc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151833988	151833988	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	60	302	0	ENST00000262189.6:c.14665G>C	p.Asp4889His	p.D4889H	ENST00000262189	NM_170606.2	4889	Gac/Cac					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41572904	41572904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	106	410	0	ENST00000263253.7:c.5189C>T	p.Ser1730Phe	p.S1730F	ENST00000263253	NM_001429.3	1730	tCt/tTt					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41573335	41573335	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	116	565	0	ENST00000263253.7:c.5620C>T	p.Gln1874Ter	p.Q1874*	ENST00000263253	NM_001429.3	1874	Cag/Tag					NEWRECORD																																																																									
SUZ12	0	MSKCC	GRCh37	17	30264387	30264387	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012679-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	50	288	0	ENST00000322652.5:c.123del	p.Gly42AlafsTer30	p.G42Afs*30	ENST00000322652	NM_015355.2	41	tCc/tc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014330-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	361	562	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0011250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			127	100	253	2	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
DCUN1D1	0	MSKCC	GRCh37	3	182665074	182665074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	85	603	0	ENST00000292782.4:c.652G>C	p.Asp218His	p.D218H	ENST00000292782	NM_020640.2	218	Gac/Cac					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32190509	32190509	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	57	598	2	ENST00000375023.3:c.230G>C	p.Gly77Ala	p.G77A	ENST00000375023	NM_004557.3	77	gGa/gCa					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	756592	756592	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	49	520	0	ENST00000314574.4:c.236C>T	p.Ser79Leu	p.S79L	ENST00000314574	NM_005433.3	79	tCa/tTa					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023646	31023646	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011250-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	107	813	0	ENST00000375687.4:c.3131C>G	p.Ser1044Cys	p.S1044C	ENST00000375687	NM_015338.5	1044	tCc/tGc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	452	589	3	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49934961	49934961	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	337	923	1	ENST00000296474.3:c.2038T>A	p.Ser680Thr	p.S680T	ENST00000296474	NM_002447.2	680	Tct/Act					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142272235	142272235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	162	419	0	ENST00000350721.4:c.2639C>T	p.Ala880Val	p.A880V	ENST00000350721	NM_001184.3	880	gCa/gTa					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81346642	81346642	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	145	407	0	ENST00000222390.5:c.1311G>C	p.Glu437Asp	p.E437D	ENST00000222390	NM_000601.4	437	gaG/gaC					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175573	112175573	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	223	472	0	ENST00000257430.4:c.4283del	p.Gly1428AspfsTer45	p.G1428Dfs*45	ENST00000257430	NM_000038.5	1428	Gga/ga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112137024	112137028	+	stop_gained	Nonsense_Mutation	ONP	CAGAA	CAGAA	TAGAT			P-0010360-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	304	394	2	ENST00000257430.4:c.778_782delinsTAGAT	p.Gln260_Asn261delinsTer	p.Q260_N261delins*	ENST00000257430	NM_000038.5	260	CAGAAt/TAGATt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578475	7578475	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	15	460	0	ENST00000269305.4:c.455C>A	p.Pro152Gln	p.P152Q	ENST00000269305	NM_001126112.2	152	cCg/cAg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162748510	162748510	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	53	294	0	ENST00000367921.3:c.2424A>T	p.Gln808His	p.Q808H	ENST00000367921	NM_006182.2	808	caA/caT					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212530177	212530177	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	171	486	2	ENST00000342788.4:c.1742C>G	p.Ser581Cys	p.S581C	ENST00000342788	NM_005235.2	581	tCt/tGt					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67569229	67569229	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			501	196	549	0	ENST00000274335.5:c.346C>G	p.Pro116Ala	p.P116A	ENST00000274335		116	Ccg/Gcg					NEWRECORD																																																																									
HIST1H3J	0	MSKCC	GRCh37	6	27858518	27858518	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	185	953	0	ENST00000359303.2:c.53G>C	p.Arg18Pro	p.R18P	ENST00000359303	NM_003535.2	18	cGg/cCg					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435765	110435765	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012773-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	83	108	0	ENST00000375856.3:c.2636G>A	p.Gly879Asp	p.G879D	ENST00000375856	NM_003749.2	879	gGc/gAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0010067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	45	455	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	52	215	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15303220	15303220	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			900	58	525	2	ENST00000263388.2:c.308G>A	p.Arg103Gln	p.R103Q	ENST00000263388	NM_000435.2	103	cGa/cAa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0012138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	169	551	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577077	7577077	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	167	532	0	ENST00000269305.4:c.861G>C	p.Glu287Asp	p.E287D	ENST00000269305	NM_001126112.2	287	gaG/gaC					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6045523	6045523	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012138-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	43	104	0	ENST00000265849.7:c.163G>T	p.Asp55Tyr	p.D55Y	ENST00000265849	NM_000535.5	55	Gat/Tat					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	147	437	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52613132	52613132	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			646	177	476	1	ENST00000394830.3:c.3396G>A	p.Trp1132Ter	p.W1132*	ENST00000394830	NM_018313.4	1132	tgG/tgA					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11217303	11217303	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			962	160	611	0	ENST00000361445.4:c.4375G>C	p.Ala1459Pro	p.A1459P	ENST00000361445	NM_004958.3	1459	Gcc/Ccc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183791	10183802	+	inframe_deletion	In_Frame_Del	DEL	TATGGCTCAACT	TATGGCTCAACT	-			P-0014398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			948	212	698	0	ENST00000256474.2:c.261_272del	p.Trp88_Phe91del	p.W88_F91del	ENST00000256474	NM_000551.3	87	gTATGGCTCAACTtc/gtc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89391105	89391105	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	177	562	0	ENST00000336596.2:c.1172del	p.Asn391ThrfsTer4	p.N391Tfs*4	ENST00000336596	NM_005233.5	391	Aac/ac					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32164728	32164732	+	frameshift_variant	Frame_Shift_Del	DEL	GCTTG	GCTTG	CTTT			P-0014398-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1072	156	611	3	ENST00000375023.3:c.5170_5174delinsAAAG	p.Gln1724LysfsTer21	p.Q1724Kfs*21	ENST00000375023	NM_004557.3	1724	CAAGCa/AAAGa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29527461	29527461	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	66	464	0	ENST00000358273.4:c.910C>T	p.Arg304Ter	p.R304*	ENST00000358273	NM_001042492.2	304	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	49	569	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27094386	27094386	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	70	408	0	ENST00000324856.7:c.3094G>T	p.Glu1032Ter	p.E1032*	ENST00000324856	NM_006015.4	1032	Gag/Tag					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157469919	157469928	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAACAGAC	CAGAACAGAC	-			P-0012374-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	47	584	0	ENST00000346085.5:c.2715_2724del	p.Gln905HisfsTer6	p.Q905Hfs*6	ENST00000346085	NM_020732.3	905	CAGAACAGACca/ca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			313	263	527	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			147	141	758	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa					NEWRECORD																																																																									
PBRM1	55193	MSKCC	GRCh37	3	52678784	52678784	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-	rs771618422		P-0014849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			108	90	375	0	ENST00000394830.3:c.835del	p.Ile279TyrfsTer4	p.I279Yfs*4	ENST00000394830	NM_018313.4	279	Ata/ta					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88476387	88476387	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202056599		P-0014849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			163	64	567	1	ENST00000360948.2:c.1745G>A	p.Arg582Gln	p.R582Q	ENST00000360948	NM_001012338.2	582	cGg/cAg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014849-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			149	67	416	0	ENST00000342988.3:c.1157G>C	p.Gly386Ala	p.G386A	ENST00000342988	NM_005359.5	386	gGt/gCt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151932987	151932987	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014011-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			167	37	55	0	ENST00000262189.6:c.2684G>C	p.Arg895Thr	p.R895T	ENST00000262189	NM_170606.2	895	aGa/aCa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241678	55241681	+	protein_altering_variant	In_Frame_Del	DEL	AAAC	AAAC	G			P-0014011-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			789	176	480	0	ENST00000275493.2:c.2126_2129delinsG	p.Glu709_Thr710delinsGly	p.E709_T710delinsG	ENST00000275493	NM_005228.3	709	gAAACt/gGt					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115117389	115117405	+	frameshift_variant	Frame_Shift_Del	DEL	TTCAAGATGTCATTGGC	TTCAAGATGTCATTGGC	-			P-0012981-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	69	690	0	ENST00000257566.3:c.769_785del	p.Ala257ThrfsTer4	p.A257Tfs*4	ENST00000257566	NM_016569.3	257	GCCAATGACATCTTGAAa/a					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	298	456	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98231100	98231100	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28936404		P-0013887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	42	313	0	ENST00000331920.6:c.2183C>T	p.Thr728Met	p.T728M	ENST00000331920	NM_000264.3	728	aCg/aTg					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1622330	1622330	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	40	876	0	ENST00000344749.5:c.634G>A	p.Ala212Thr	p.A212T	ENST00000344749	NM_001136139.2	212	Gcc/Acc					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1801204	1801205	+	missense_variant	Missense_Mutation	DNP	GC	GC	TT			P-0013887-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	1134	467	3	ENST00000260795.2:c.333_334delinsTT	p.Gln111_Arg112delinsHisTrp	p.Q111_R112delinsHW	ENST00000260795		111	caGCgg/caTTgg					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73346365	73346365	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			880	146	582	0	ENST00000377767.4:c.1435G>T	p.Asp479Tyr	p.D479Y	ENST00000377767	NM_014953.3	479	Gac/Tac					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91312725	91312725	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	239	722	0	ENST00000355112.3:c.2464C>T	p.Pro822Ser	p.P822S	ENST00000355112	NM_000057.2	822	Cct/Tct					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73346355	73346355	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			918	138	599	0	ENST00000377767.4:c.1445G>A	p.Gly482Glu	p.G482E	ENST00000377767	NM_014953.3	482	gGa/gAa					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3832864	3832864	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	79	632	2	ENST00000262367.5:c.1394A>T	p.Gln465Leu	p.Q465L	ENST00000262367	NM_004380.2	465	cAg/cTg					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41249283	41249283	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	133	594	0	ENST00000357654.3:c.571G>T	p.Val191Phe	p.V191F	ENST00000357654	NM_007294.3	191	Gtt/Ttt					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106158079	106158079	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	153	614	0	ENST00000380013.4:c.2980C>T	p.His994Tyr	p.H994Y	ENST00000380013	NM_001127208.2	994	Cac/Tac					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180053149	180053150	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	59	720	1	ENST00000261937.6:c.1219_1220delinsAT	p.Gly407Ile	p.G407I	ENST00000261937	NM_182925.4	407	GGc/ATc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2969663	2969663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	80	784	0	ENST00000396946.4:c.1616G>T	p.Cys539Phe	p.C539F	ENST00000396946	NM_032415.4	539	tGc/tTc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481486	140481486	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1539	298	1095	0	ENST00000288602.6:c.1322T>G	p.Leu441Arg	p.L441R	ENST00000288602	NM_004333.4	441	cTt/cGt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398282	25398284	+	missense_variant	Missense_Mutation	ONP	CAC	CAC	AAT			P-0013900-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	143	616	1	ENST00000256078.4:c.35_37delinsATT	p.Gly12_Gly13delinsAspCys	p.G12_G13delinsDC	ENST00000256078	NM_033360.2	12	gGTGgc/gATTgc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011530-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	299	599	0	ENST00000349496.5:c.98C>G	p.Ser33Cys	p.S33C	ENST00000349496	NM_001904.3	33	tCt/tGt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	90	453	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0012436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	88	401	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72829227	72829227	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1375	163	862	2	ENST00000268489.5:c.7354C>T	p.Pro2452Ser	p.P2452S	ENST00000268489	NM_006885.3	2452	Cca/Tca					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575055	48575055	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	47	415	0	ENST00000342988.3:c.250-1G>A		p.X84_splice	ENST00000342988	NM_005359.5	84						NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46242729	46242729	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012436-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	31	308	0	ENST00000334344.6:c.1691del	p.Ser564Ter	p.S564*	ENST00000334344	NM_152641.2	564	tCa/ta					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0014489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	186	711	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56181857	56181857	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014489-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			436	120	399	0	ENST00000399503.3:c.4081C>T	p.His1361Tyr	p.H1361Y	ENST00000399503	NM_005921.1	1361	Cat/Tat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	146	471	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108143283	108143283	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	325	460	0	ENST00000278616.4:c.3102T>G	p.Tyr1034Ter	p.Y1034*	ENST00000278616	NM_000051.3	1034	taT/taG					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15971433	15971433	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0013009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	123	490	0	ENST00000268712.3:c.4516A>G	p.Thr1506Ala	p.T1506A	ENST00000268712	NM_006311.3	1506	Aca/Gca					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575148	48575148	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	152	512	0	ENST00000342988.3:c.342T>G	p.Tyr114Ter	p.Y114*	ENST00000342988	NM_005359.5	114	taT/taG					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57470729	57470729	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013009-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	104	344	0	ENST00000371085.3:c.202T>G	p.Phe68Val	p.F68V	ENST00000371085	NM_000516.4	68	Ttt/Gtt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	203	218	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0011141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	41	162	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578223	7578223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	32	536	0	ENST00000269305.4:c.626G>A	p.Arg209Lys	p.R209K	ENST00000269305	NM_001126112.2	209	aGa/aAa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578534	7578534	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs866775781		P-0011141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	38	362	0	ENST00000269305.4:c.396G>C	p.Lys132Asn	p.K132N	ENST00000269305	NM_001126112.2	132	aaG/aaC					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15349964	15349964	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	138	395	0	ENST00000263377.2:c.3688G>A	p.Ala1230Thr	p.A1230T	ENST00000263377	NM_058243.2	1230	Gcc/Acc					NEWRECORD																																																																									
MYD88	0	MSKCC	GRCh37	3	38180360	38180360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1167	166	538	0	ENST00000396334.3:c.208G>A	p.Glu70Lys	p.E70K	ENST00000396334	NM_002468.4	70	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579506	7579506	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011141-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	47	420	0	ENST00000269305.4:c.181G>C	p.Asp61His	p.D61H	ENST00000269305	NM_001126112.2	61	Gat/Cat					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1315	983	494	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49047507	49047507	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	58	404	0	ENST00000267163.4:c.2501C>G	p.Ser834Ter	p.S834*	ENST00000267163	NM_000321.2	834	tCa/tGa					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81888102	81888102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	92	752	0	ENST00000359376.3:c.247G>A	p.Glu83Lys	p.E83K	ENST00000359376	NM_002661.3	83	Gag/Aag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578455	7578455	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs730882000		P-0012076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	125	424	0	ENST00000269305.4:c.475G>C	p.Ala159Pro	p.A159P	ENST00000269305	NM_001126112.2	159	Gcc/Ccc					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45649965	45649966	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0012076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	42	285	0	ENST00000407780.3:c.869_870delinsTT	p.Trp290Phe	p.W290F	ENST00000407780	NM_001283052.1	290	tGG/tTT					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18747427	18747427	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0010023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	89	246	0	ENST00000266497.5:c.3889-1G>C		p.X1297_splice	ENST00000266497		1297						NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73349365	73349365	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	39	525	0	ENST00000377767.4:c.971A>T	p.Glu324Val	p.E324V	ENST00000377767	NM_014953.3	324	gAa/gTa					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41988509	41988509	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010023-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	78	704	0	ENST00000219905.7:c.1301A>G	p.Asp434Gly	p.D434G	ENST00000219905	NM_001164273.1	434	gAc/gGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	250	487	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971187	21971197	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCTGCCCA	GGCGCTGCCCA	-			P-0014127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	62	156	0	ENST00000304494.5:c.161_171del	p.Met54ThrfsTer62	p.M54Tfs*62	ENST00000304494	NM_000077.4	54	aTGGGCAGCGCC/a					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971187	21971197	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCTGCCCA	GGCGCTGCCCA	-			P-0014127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	62	156	0	ENST00000304494.5:c.161_171del	p.Met54ThrfsTer62	p.M54Tfs*62	ENST00000304494	NM_000077.4	54	aTGGGCAGCGCC/a					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971187	21971197	+	frameshift_variant	Frame_Shift_Del	DEL	GGCGCTGCCCA	GGCGCTGCCCA	-			P-0014127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			103	62	156	0	ENST00000304494.5:c.161_171del	p.Met54ThrfsTer62	p.M54Tfs*62	ENST00000304494	NM_000077.4	54	aTGGGCAGCGCC/a					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242469	55242475	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAG	TTAAGAG	C			P-0014127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	188	503	0	ENST00000275493.2:c.2239_2245delinsC	p.Leu747_Glu749delinsGln	p.L747_E749delinsQ	ENST00000275493	NM_005228.3	747	TTAAGAGaa/Caa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108175528	108175528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	93	513	0	ENST00000278616.4:c.5623C>T	p.Arg1875Ter	p.R1875*	ENST00000278616	NM_000051.3	1875	Cga/Tga					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108201096	108201096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	44	427	1	ENST00000278616.4:c.7463G>A	p.Cys2488Tyr	p.C2488Y	ENST00000278616	NM_000051.3	2488	tGt/tAt					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72495684	72495684	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	38	465	0	ENST00000477973.2:c.386T>C	p.Cys130Arg	p.C130R	ENST00000477973	NM_012234.5	130	Tgc/Cgc					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741349	17741349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	79	397	0	ENST00000250003.3:c.20C>T	p.Pro7Leu	p.P7L	ENST00000250003	NM_002478.4	7	cCg/cTg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437714	52437714	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1517	385	1051	2	ENST00000460680.1:c.1447C>T	p.Gln483Ter	p.Q483*	ENST00000460680	NM_004656.3	483	Cag/Tag					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13946126	13946126	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	141	445	0	ENST00000405192.2:c.970G>A	p.Asp324Asn	p.D324N	ENST00000405192	NM_001163147.1	324	Gac/Aac					NEWRECORD																																																																									
MEF2B	0	MSKCC	GRCh37	19	19258545	19258545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1303	280	825	1	ENST00000162023.5:c.355G>A	p.Glu119Lys	p.E119K	ENST00000162023		119	Gaa/Aaa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436826	52436845	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAGGCACGCCTCATAGTT	TTGAGGCACGCCTCATAGTT	-			P-0011238-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1311	221	858	0	ENST00000460680.1:c.1933_1952del	p.Asn645GlyfsTer12	p.N645Gfs*12	ENST00000460680	NM_004656.3	645	AACTATGAGGCGTGCCTCAAg/g					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1280380	1280380	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112614087		P-0011365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	119	438	0	ENST00000310581.5:c.1843G>A	p.Ala615Thr	p.A615T	ENST00000310581	NM_198253.2	615	Gcc/Acc					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46285646	46285646	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	189	433	0	ENST00000334344.6:c.5006G>C	p.Trp1669Ser	p.W1669S	ENST00000334344	NM_152641.2	1669	tGg/tCg					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26959480	26959480	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0011365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	138	370	0	ENST00000381527.3:c.646+1G>A		p.X216_splice	ENST00000381527	NM_001260.1	216						NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881648	37881648	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	155	443	0	ENST00000269571.5:c.2718G>C	p.Trp906Cys	p.W906C	ENST00000269571		906	tgG/tgC					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78914338	78914338	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011365-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	182	516	2	ENST00000306801.3:c.2962C>T	p.Arg988Trp	p.R988W	ENST00000306801	NM_020761.2	988	Cgg/Tgg					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004289-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			522	232	510	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16260749	16260749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004289-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			479	209	436	0	ENST00000375759.3:c.8014G>A	p.Val2672Met	p.V2672M	ENST00000375759	NM_015001.2	2672	Gtg/Atg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115980	8115980	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0004289-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			342	206	242	0	ENST00000346208.3:c.1328del	p.Gly443ValfsTer32	p.G443Vfs*32	ENST00000346208		442	atG/at					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101688	27101688	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004289-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	92	794	1	ENST00000324856.7:c.4970G>A	p.Arg1657Lys	p.R1657K	ENST00000324856	NM_006015.4	1657	aGg/aAg					NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36823865	36823865	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0004289-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			314	154	294	0	ENST00000373129.3:c.317T>C	p.Val106Ala	p.V106A	ENST00000373129	NM_032017.1	106	gTg/gCg					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46521609	46521609	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0004289-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			394	213	380	0	ENST00000262741.5:c.799C>A	p.Leu267Met	p.L267M	ENST00000262741	NM_003629.3	267	Ctg/Atg					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46264922	46264922	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0004289-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	177	458	0	ENST00000371998.3:c.1792A>C	p.Ser598Arg	p.S598R	ENST00000371998		598	Agt/Cgt					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37035057	37035057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0004289-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			366	157	324	0	ENST00000231790.2:c.19G>A	p.Val7Ile	p.V7I	ENST00000231790	NM_000249.3	7	Gtt/Att					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011301-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			916	130	428	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11132437	11132437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011301-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			748	114	727	2	ENST00000344626.4:c.2653C>T	p.Arg885Cys	p.R885C	ENST00000344626	NM_003072.3	885	Cgc/Tgc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602647	10602647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011301-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			691	149	622	0	ENST00000171111.5:c.931C>T	p.His311Tyr	p.H311Y	ENST00000171111	NM_203500.1	311	Cac/Tac					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9776087	9776087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011301-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			524	69	483	0	ENST00000377346.4:c.551G>A	p.Arg184Gln	p.R184Q	ENST00000377346	NM_005026.3	184	cGg/cAg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431479	49431479	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	115	477	0	ENST00000301067.7:c.9660G>C	p.Leu3220Phe	p.L3220F	ENST00000301067	NM_003482.3	3220	ttG/ttC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576837	7577056	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGC	TCCCAAGACTTAGTACCTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGC	-			P-0012969-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	79	338	0	ENST00000269305.4:c.882_993+16del		p.X294_splice	ENST00000269305	NM_001126112.2	294						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577534	7577534	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	730	508	0	ENST00000269305.4:c.747G>T	p.Arg249Ser	p.R249S	ENST00000269305	NM_001126112.2	249	agG/agT					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	89	192	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	89	192	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	89	192	0	ENST00000304494.5:c.250G>T	p.Asp84Tyr	p.D84Y	ENST00000304494	NM_000077.4	84	Gac/Tac					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	696	344	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458225	120458225	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	87	399	0	ENST00000256646.2:c.7120C>T	p.His2374Tyr	p.H2374Y	ENST00000256646	NM_024408.3	2374	Cat/Tat					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18793388	18793388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	806	454	0	ENST00000266497.5:c.4085G>A	p.Ser1362Asn	p.S1362N	ENST00000266497		1362	aGt/aAt					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675877	30675877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1457	1245	771	1	ENST00000376406.3:c.2479G>A	p.Glu827Lys	p.E827K	ENST00000376406	NM_014641.2	827	Gag/Aag					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11204726	11204726	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1512	126	537	0	ENST00000361445.4:c.4851G>C	p.Gln1617His	p.Q1617H	ENST00000361445	NM_004958.3	1617	caG/caC					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72058578	72058578	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1866	161	739	0	ENST00000357731.5:c.862A>T	p.Thr288Ser	p.T288S	ENST00000357731	NM_173808.2	288	Aca/Tca					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61727000	61727000	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	188	353	0	ENST00000401558.2:c.438G>T	p.Trp146Cys	p.W146C	ENST00000401558	NM_003400.3	146	tgG/tgT					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190728706	190728706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	261	317	0	ENST00000441310.2:c.2094G>T	p.Gln698His	p.Q698H	ENST00000441310	NM_000534.4	698	caG/caT					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212652803	212652803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	412	513	0	ENST00000342788.4:c.503G>T	p.Arg168Leu	p.R168L	ENST00000342788	NM_005235.2	168	cGg/cTg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212989481	212989481	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	346	428	0	ENST00000342788.4:c.230T>A	p.Leu77Gln	p.L77Q	ENST00000342788	NM_005235.2	77	cTg/cAg					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55127327	55127327	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	336	459	1	ENST00000257290.5:c.115G>T	p.Val39Leu	p.V39L	ENST00000257290	NM_006206.4	39	Gtg/Ttg					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55980311	55980311	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	364	463	0	ENST00000263923.4:c.780G>A	p.Trp260Ter	p.W260*	ENST00000263923	NM_002253.2	260	tgG/tgA					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153249402	153249402	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	278	419	0	ENST00000281708.4:c.1376G>T	p.Gly459Val	p.G459V	ENST00000281708	NM_033632.3	459	gGg/gTg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630675	187630675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	406	495	0	ENST00000441802.2:c.307G>A	p.Gly103Arg	p.G103R	ENST00000441802	NM_005245.3	103	Gga/Aga					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294210	1294210	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	291	369	0	ENST00000310581.5:c.791G>C	p.Gly264Ala	p.G264A	ENST00000310581	NM_198253.2	264	gGa/gCa					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158486	26158486	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	114	293	0	ENST00000289316.2:c.89G>T	p.Arg30Leu	p.R30L	ENST00000289316	NM_138720.2	30	cGc/cTc					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30672275	30672275	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1203	1118	647	0	ENST00000376406.3:c.4685G>C	p.Arg1562Thr	p.R1562T	ENST00000376406	NM_014641.2	1562	aGg/aCg					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675744	30675744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1562	1247	833	0	ENST00000376406.3:c.2612G>A	p.Arg871Lys	p.R871K	ENST00000376406	NM_014641.2	871	aGa/aAa					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30680755	30680755	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			987	853	505	0	ENST00000376406.3:c.964C>G	p.Gln322Glu	p.Q322E	ENST00000376406	NM_014641.2	322	Cag/Gag					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30680976	30680976	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	818	493	0	ENST00000376406.3:c.743C>G	p.Ser248Cys	p.S248C	ENST00000376406	NM_014641.2	248	tCt/tGt					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30681759	30681759	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1396	377	433	0	ENST00000376406.3:c.338A>C	p.His113Pro	p.H113P	ENST00000376406	NM_014641.2	113	cAc/cCc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2962323	2962323	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1266	508	630	0	ENST00000396946.4:c.2214G>T	p.Trp738Cys	p.W738C	ENST00000396946	NM_032415.4	738	tgG/tgT					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140494194	140494194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1079	452	540	0	ENST00000288602.6:c.1054G>T	p.Asp352Tyr	p.D352Y	ENST00000288602	NM_004333.4	352	Gat/Tat					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8492898	8492898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	198	433	0	ENST00000356435.5:c.2431C>G	p.Arg811Gly	p.R811G	ENST00000356435		811	Cgc/Ggc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518054	8518054	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	304	480	0	ENST00000356435.5:c.1337G>A	p.Gly446Glu	p.G446E	ENST00000356435		446	gGa/gAa					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70451365	70451365	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	278	634	0	ENST00000373644.4:c.6205G>C	p.Glu2069Gln	p.E2069Q	ENST00000373644	NM_030625.2	2069	Gag/Cag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89725060	89725060	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	375	309	0	ENST00000371953.3:c.1043C>G	p.Thr348Arg	p.T348R	ENST00000371953	NM_000314.4	348	aCa/aGa					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2154356	2154356	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	413	620	1	ENST00000434045.2:c.572G>C	p.Arg191Pro	p.R191P	ENST00000434045	NM_001127598.1	191	cGt/cCt					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741416	17741416	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	454	558	0	ENST00000250003.3:c.87C>A	p.Phe29Leu	p.F29L	ENST00000250003	NM_002478.4	29	ttC/ttA					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100922222	100922222	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	892	708	0	ENST00000325455.5:c.2290G>T	p.Gly764Ter	p.G764*	ENST00000325455	NM_001202474.3	764	Gga/Tga					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119149241	119149241	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	228	530	0	ENST00000264033.4:c.1249C>G	p.Pro417Ala	p.P417A	ENST00000264033	NM_005188.3	417	Cct/Gct					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434408	49434408	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	85	381	0	ENST00000301067.7:c.7145C>T	p.Pro2382Leu	p.P2382L	ENST00000301067	NM_003482.3	2382	cCa/cTa					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28623675	28623675	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			232	371	350	0	ENST00000241453.7:c.883-1G>T		p.X295_splice	ENST00000241453	NM_004119.2	295						NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73346364	73346364	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	134	322	0	ENST00000377767.4:c.1436A>T	p.Asp479Val	p.D479V	ENST00000377767	NM_014953.3	479	gAc/gTc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435247	110435247	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			109	164	133	0	ENST00000375856.3:c.3154A>T	p.Thr1052Ser	p.T1052S	ENST00000375856	NM_003749.2	1052	Acc/Tcc					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007768	45007768	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	637	396	0	ENST00000558401.1:c.215C>G	p.Ser72Ter	p.S72*	ENST00000558401	NM_004048.2	72	tCa/tGa					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2222279	2222279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	524	581	0	ENST00000326181.6:c.563G>A	p.Cys188Tyr	p.C188Y	ENST00000326181	NM_032271.2	188	tGc/tAc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3789621	3789621	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	387	524	0	ENST00000262367.5:c.4238A>C	p.His1413Pro	p.H1413P	ENST00000262367	NM_004380.2	1413	cAc/cCc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29679418	29679418	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	528	393	0	ENST00000358273.4:c.7601C>G	p.Thr2534Ser	p.T2534S	ENST00000358273	NM_001042492.2	2534	aCt/aGt					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15349598	15349598	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	703	341	0	ENST00000263377.2:c.3976G>C	p.Glu1326Gln	p.E1326Q	ENST00000263377	NM_058243.2	1326	Gag/Cag					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42790961	42790961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	1403	639	1	ENST00000575354.2:c.106C>T	p.Pro36Ser	p.P36S	ENST00000575354	NM_015125.3	36	Cct/Tct					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546782	9546782	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	436	275	0	ENST00000353224.5:c.1240C>A	p.Pro414Thr	p.P414T	ENST00000353224	NM_177990.2	414	Ccc/Acc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106917	27106917	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	843	347	0	ENST00000324856.7:c.6532del	p.Asp2178ThrfsTer22	p.D2178Tfs*22	ENST00000324856	NM_006015.4	2176	caG/ca					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8733839	8733840	+	missense_variant	Missense_Mutation	DNP	AC	AC	CT			P-0010916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	154	267	0	ENST00000356435.5:c.4_5delinsAG	p.Val2Arg	p.V2R	ENST00000356435		2	GTg/AGg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220629	1220629	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	41	711	0	ENST00000326873.7:c.650del	p.Pro217ArgfsTer70	p.P217Rfs*70	ENST00000326873	NM_000455.4	216	tCc/tc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380279	25380279	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	92	627	0	ENST00000256078.4:c.179G>T	p.Gly60Val	p.G60V	ENST00000256078	NM_033360.2	60	gGt/gTt					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729154	66729154	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	59	562	0	ENST00000307102.5:c.362G>C	p.Cys121Ser	p.C121S	ENST00000307102	NM_002755.3	121	tGc/tCc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27088723	27088723	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	63	652	1	ENST00000324856.7:c.2332G>T	p.Gly778Ter	p.G778*	ENST00000324856	NM_006015.4	778	Gga/Tga					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602921	10602923	+	inframe_deletion	In_Frame_Del	DEL	CTC	CTC	-			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	64	525	0	ENST00000171111.5:c.655_657del	p.Glu219del	p.E219del	ENST00000171111	NM_203500.1	219	GAG/-					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30691882	30691882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	92	373	0	ENST00000359013.4:c.459G>T	p.Lys153Asn	p.K153N	ENST00000359013	NM_001024847.2	153	aaG/aaT					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356275	66356275	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013863-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	59	585	0	ENST00000273854.3:c.1222T>C	p.Cys408Arg	p.C408R	ENST00000273854	NM_004439.5	408	Tgt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			847	132	623	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	743066	743066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	55	545	0	ENST00000314574.4:c.912C>G	p.Ile304Met	p.I304M	ENST00000314574	NM_005433.3	304	atC/atG					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717708	89717708	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	46	450	0	ENST00000371953.3:c.733C>T	p.Gln245Ter	p.Q245*	ENST00000371953	NM_000314.4	245	Cag/Tag					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23538982	23538982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	79	698	0	ENST00000380871.4:c.457G>A	p.Glu153Lys	p.E153K	ENST00000380871	NM_006167.3	153	Gaa/Aaa					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023870	31023870	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	136	598	0	ENST00000375687.4:c.3355G>C	p.Glu1119Gln	p.E1119Q	ENST00000375687	NM_015338.5	1119	Gag/Cag					NEWRECORD																																																																									
RHEB	0	MSKCC	GRCh37	7	151216551	151216551	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	31	260	0	ENST00000262187.5:c.47C>T	p.Ser16Phe	p.S16F	ENST00000262187	NM_005614.3	16	tCt/tTt					NEWRECORD																																																																									
RIT1	0	MSKCC	GRCh37	1	155874261	155874261	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	35	571	0	ENST00000368323.3:c.270G>A	p.Met90Ile	p.M90I	ENST00000368323	NM_006912.5	90	atG/atA					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25536793	25536793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	89	696	2	ENST00000264709.3:c.61G>A	p.Glu21Lys	p.E21K	ENST00000264709	NM_175629.2	21	Gag/Aag					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180048166	180048166	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	62	545	1	ENST00000261937.6:c.2107G>A	p.Gly703Arg	p.G703R	ENST00000261937	NM_182925.4	703	Gga/Aga					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6441505	6441505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	41	386	0	ENST00000356142.4:c.352C>T	p.Pro118Ser	p.P118S	ENST00000356142	NM_018890.3	118	Cct/Tct					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50468056	50468056	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	46	371	1	ENST00000331340.3:c.1291G>T	p.Glu431Ter	p.E431*	ENST00000331340	NM_006060.4	431	Gag/Tag					NEWRECORD																																																																									
RHEB	0	MSKCC	GRCh37	7	151216587	151216587	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	22	204	0	ENST00000262187.5:c.11C>G	p.Ser4Cys	p.S4C	ENST00000262187	NM_005614.3	4	tCc/tGc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118362612	118362612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	42	521	0	ENST00000534358.1:c.4973G>T	p.Arg1658Leu	p.R1658L	ENST00000534358	NM_005933.3	1658	cGg/cTg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49427995	49427995	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	53	524	0	ENST00000301067.7:c.10595T>C	p.Ile3532Thr	p.I3532T	ENST00000301067	NM_003482.3	3532	aTt/aCt					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21619935	21619935	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1015	136	867	0	ENST00000382592.4:c.231G>C	p.Leu77Phe	p.L77F	ENST00000382592	NM_014572.2	77	ttG/ttC					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3817853	3817853	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1115	73	748	0	ENST00000262367.5:c.3118G>T	p.Glu1040Ter	p.E1040*	ENST00000262367	NM_004380.2	1040	Gag/Tag					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68867214	68867214	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	51	374	0	ENST00000261769.5:c.2461G>A	p.Asp821Asn	p.D821N	ENST00000261769	NM_004360.3	821	Gac/Aac					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72821173	72821173	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1354	121	973	0	ENST00000268489.5:c.11002C>G	p.Leu3668Val	p.L3668V	ENST00000268489	NM_006885.3	3668	Ctc/Gtc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16029487	16029487	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			868	56	635	2	ENST00000268712.3:c.1543G>T	p.Glu515Ter	p.E515*	ENST00000268712	NM_006311.3	515	Gaa/Taa					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41226450	41226450	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1194	90	791	0	ENST00000357654.3:c.4573C>G	p.Gln1525Glu	p.Q1525E	ENST00000357654	NM_007294.3	1525	Caa/Gaa					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56492807	56492807	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			983	61	636	0	ENST00000407977.2:c.132G>C	p.Gln44His	p.Q44H	ENST00000407977		44	caG/caC					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15281587	15281587	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1128	69	781	0	ENST00000263388.2:c.4786G>C	p.Glu1596Gln	p.E1596Q	ENST00000263388	NM_000435.2	1596	Gag/Cag					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39933958	39933958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	87	495	1	ENST00000378444.4:c.641C>T	p.Ser214Leu	p.S214L	ENST00000378444	NM_001123385.1	214	tCa/tTa					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123199782	123199782	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	52	337	0	ENST00000218089.9:c.2082C>G	p.Ile694Met	p.I694M	ENST00000218089	NM_001042749.1	694	atC/atG					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123215328	123215328	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	72	396	0	ENST00000218089.9:c.2877del	p.Phe959LeufsTer6	p.F959Lfs*6	ENST00000218089	NM_001042749.1	958	acT/ac					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5080270	5080270	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012331-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	74	464	0	ENST00000381652.3:c.2173del	p.Glu725LysfsTer6	p.E725Kfs*6	ENST00000381652	NM_004972.3	725	Gaa/aa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	58	373	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2223311	2223311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1133	136	720	0	ENST00000398665.3:c.3422C>T	p.Thr1141Ile	p.T1141I	ENST00000398665	NM_032482.2	1141	aCa/aTa					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63850653	63850653	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	35	364	0	ENST00000279873.7:c.1433del	p.Leu478Ter	p.L478*	ENST00000279873	NM_032199.2	477	acT/ac					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	115	478	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0014436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	110	609	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577081	7577081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			879	385	906	1	ENST00000269305.4:c.857A>G	p.Glu286Gly	p.E286G	ENST00000269305	NM_001126112.2	286	gAa/gGa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014436-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			484	102	645	1	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			506	217	552	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	364	806	4	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	44	314	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac					NEWRECORD																																																																									
PIK3R1	5295	MSKCC	GRCh37	5	67592099	67592099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			323	76	297	0	ENST00000274335.5:c.1915C>T	p.Arg639Ter	p.R639*	ENST00000274335		639	Cga/Tga					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41545145	41545145	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			495	333	706	1	ENST00000263253.7:c.2345T>A	p.Leu782Ter	p.L782*	ENST00000263253	NM_001429.3	782	tTg/tAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112170646	112170646	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			250	63	299	2	ENST00000257430.4:c.1744-2A>G		p.X582_splice	ENST00000257430	NM_000038.5	582						NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101894839	101894839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015074-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			167	122	256	1	ENST00000374994.4:c.392C>A	p.Ala131Asp	p.A131D	ENST00000374994	NM_004612.2	131	gCt/gAt					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80412493	80412493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	374	716	1	ENST00000286548.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000286548	NM_002072.3	183	cGa/cAa					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69233391	69233391	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs200828111		P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	251	532	0	ENST00000462284.1:c.1256A>G	p.Glu419Gly	p.E419G	ENST00000462284	NM_002392.5	419	gAg/gGg					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99182521	99182521	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	237	526	2	ENST00000074304.5:c.2324C>T	p.Pro775Leu	p.P775L	ENST00000074304	NM_001134224.1	775	cCg/cTg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098501	11098501	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	108	289	0	ENST00000344626.4:c.1019C>T	p.Ala340Val	p.A340V	ENST00000344626	NM_003072.3	340	gCg/gTg					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37070324	37070324	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	307	702	0	ENST00000231790.2:c.1459C>T	p.Arg487Ter	p.R487*	ENST00000231790	NM_000249.3	487	Cga/Tga					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50902190	50902190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			560	322	1018	1	ENST00000440232.2:c.82G>A	p.Ala28Thr	p.A28T	ENST00000440232	NM_002691.3	28	Gca/Aca					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36941122	36941122	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	366	932	0	ENST00000361632.4:c.217G>A	p.Gly73Ser	p.G73S	ENST00000361632		73	Ggc/Agc					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246402	46246402	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	292	680	0	ENST00000334344.6:c.4496T>C	p.Leu1499Pro	p.L1499P	ENST00000334344	NM_152641.2	1499	cTa/cCa					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3830804	3830806	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	282	621	0	ENST00000262367.5:c.1750_1752del	p.Ser585del	p.S585del	ENST00000262367	NM_004380.2	584	TCT/-					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7979562	7979562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	248	734	2	ENST00000319144.4:c.1463G>A	p.Arg488His	p.R488H	ENST00000319144	NM_001139.2	488	cGt/cAt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29559835	29559835	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	304	611	0	ENST00000358273.4:c.3432T>A	p.Cys1144Ter	p.C1144*	ENST00000358273	NM_001042492.2	1144	tgT/tgA					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227661009	227661009	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	142	496	1	ENST00000305123.5:c.2446C>A	p.Leu816Met	p.L816M	ENST00000305123	NM_005544.2	816	Ctg/Atg					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39755663	39755663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	270	718	0	ENST00000288319.7:c.1102G>A	p.Ala368Thr	p.A368T	ENST00000288319	NM_182918.3	368	Gcc/Acc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437432	52437432	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	256	654	1	ENST00000460680.1:c.1729G>A	p.Glu577Lys	p.E577K	ENST00000460680	NM_004656.3	577	Gag/Aag					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41747933	41747933	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	190	441	0	ENST00000226382.2:c.836C>T	p.Pro279Leu	p.P279L	ENST00000226382	NM_003924.3	279	cCc/cTc					NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137525525	137525525	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs146687518		P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	298	705	0	ENST00000367739.4:c.490G>A	p.Glu164Lys	p.E164K	ENST00000367739	NM_000416.2	164	Gaa/Aaa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157522307	157522307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013700-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	299	667	0	ENST00000346085.5:c.4579G>A	p.Ala1527Thr	p.A1527T	ENST00000346085	NM_020732.3	1527	Gcc/Acc					NEWRECORD																																																																									
TNFRSF14	0	MSKCC	GRCh37	1	2491283	2491283	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			321	118	652	0	ENST00000355716.4:c.326G>A	p.Arg109Gln	p.R109Q	ENST00000355716	NM_003820.2	109	cGg/cAg					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36937066	36937066	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	74	530	0	ENST00000361632.4:c.1253G>A	p.Arg418His	p.R418H	ENST00000361632		418	cGt/cAt					NEWRECORD																																																																									
PDPK1	0	MSKCC	GRCh37	16	2636698	2636698	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	85	623	0	ENST00000342085.4:c.1147T>A	p.Phe383Ile	p.F383I	ENST00000342085	NM_002613.4	383	Ttt/Att					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			174	215	699	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45395652	45395652	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			114	45	569	0	ENST00000262160.6:c.482G>T	p.Cys161Phe	p.C161F	ENST00000262160	NM_005901.5	161	tGt/tTt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			81	53	505	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41727926	41727926	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	76	691	1	ENST00000301178.4:c.551C>T	p.Pro184Leu	p.P184L	ENST00000301178	NM_021913.4	184	cCa/cTa					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44513327	44513327	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	123	853	0	ENST00000291552.4:c.608G>A	p.Arg203His	p.R203H	ENST00000291552	NM_006758.2	203	cGt/cAt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0015055-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	39	698	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	92	377	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64577316	64577316	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	122	403	0	ENST00000337652.1:c.266T>G	p.Leu89Arg	p.L89R	ENST00000337652	NM_130803.2	89	cTc/cGc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68844245	68844245	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010807-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	45	298	0	ENST00000261769.5:c.832+1G>T		p.X278_splice	ENST00000261769	NM_004360.3	278						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0011450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	77	215	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0011450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	24	134	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47139573	47139573	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0011450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	78	222	0	ENST00000409792.3:c.5016-2A>G		p.X1672_splice	ENST00000409792	NM_014159.6	1672						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47147512	47147512	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	102	302	0	ENST00000409792.3:c.4814A>G	p.Tyr1605Cys	p.Y1605C	ENST00000409792	NM_014159.6	1605	tAt/tGt					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53240738	53240738	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011450-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1216	83	554	0	ENST00000375401.3:c.1342G>C	p.Glu448Gln	p.E448Q	ENST00000375401	NM_004187.3	448	Gaa/Caa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0014482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	39	377	2	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	89	648	1	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063681	67063681	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014482-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	58	445	0	ENST00000412916.2:c.130T>G	p.Phe44Val	p.F44V	ENST00000412916		44	Ttc/Gtc					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759752	133759752	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010399-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			251	85	630	0	ENST00000318560.5:c.2075C>T	p.Thr692Met	p.T692M	ENST00000318560	NM_005157.4	692	aCg/aTg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0011384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	180	372	1	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	229	372	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139403417	139403417	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	147	466	0	ENST00000277541.6:c.3076G>A	p.Asp1026Asn	p.D1026N	ENST00000277541	NM_017617.3	1026	Gac/Aac					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858201	9858201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1158	161	479	1	ENST00000330684.3:c.3200G>A	p.Arg1067Gln	p.R1067Q	ENST00000330684	NM_001134407.1	1067	cGg/cAg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89346280	89346280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	56	409	0	ENST00000301030.4:c.6670G>A	p.Glu2224Lys	p.E2224K	ENST00000301030	NM_001256183.1	2224	Gag/Aag					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70357663	70357663	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	69	334	0	ENST00000374080.3:c.5914C>A	p.Pro1972Thr	p.P1972T	ENST00000374080		1972	Cct/Act					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	355	844	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1266	386	1373	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0010132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	62	356	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0010132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	62	356	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0010132-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	62	356	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16075298	16075298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			670	208	404	0	ENST00000268712.3:c.254G>C	p.Arg85Thr	p.R85T	ENST00000268712	NM_006311.3	85	aGg/aCg					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39607450	39607450	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0005084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	207	530	0	ENST00000262039.4:c.1528G>C	p.Asp510His	p.D510H	ENST00000262039	NM_002647.2	510	Gat/Cat					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29483087	29483095	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	CAAGTTTTC	CAAGTTTTC	TTGA			P-0005084-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1072	114	558	0	ENST00000358273.4:c.147_155delinsTTGA	p.Lys50Ter	p.K50*	ENST00000358273	NM_001042492.2	49	taCAAGTTTTCt/taTTGAt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	242	392	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	186	294	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7216125	7216125	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	503	924	1	ENST00000380728.2:c.934C>T	p.Arg312Trp	p.R312W	ENST00000380728		312	Cgg/Tgg					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149456898	149456898	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010684-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			960	386	602	0	ENST00000286301.3:c.830C>G	p.Ser277Cys	p.S277C	ENST00000286301	NM_005211.3	277	tCc/tGc					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128205846	128205846	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			370	149	480	0	ENST00000341105.2:c.29G>A	p.Trp10Ter	p.W10*	ENST00000341105	NM_032638.4	10	tGg/tAg					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90965665	90965665	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014591-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			215	31	452	0	ENST00000265433.3:c.1652G>A	p.Arg551Lys	p.R551K	ENST00000265433	NM_002485.4	551	aGg/aAg					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013797-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	132	944	1	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98211548	98211548	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013797-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	20	704	1	ENST00000331920.6:c.3607A>T	p.Ser1203Cys	p.S1203C	ENST00000331920	NM_000264.3	1203	Agc/Tgc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	285	382	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	96	245	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36939177	36939177	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs186379741		P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	335	590	3	ENST00000361632.4:c.532G>A	p.Val178Met	p.V178M	ENST00000361632		178	Gtg/Atg					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204518734	204518734	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	205	382	1	ENST00000367182.3:c.1397G>T	p.Arg466Ile	p.R466I	ENST00000367182	NM_001278516.1	466	aGa/aTa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89480383	89480383	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	251	440	1	ENST00000336596.2:c.2220G>T	p.Met740Ile	p.M740I	ENST00000336596	NM_005233.5	740	atG/atT					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32190861	32190861	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	226	425	0	ENST00000375023.3:c.76C>A	p.Leu26Met	p.L26M	ENST00000375023	NM_004557.3	26	Ctg/Atg					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104352340	104352340	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	392	379	0	ENST00000369902.3:c.456G>T	p.Glu152Asp	p.E152D	ENST00000369902	NM_016169.3	152	gaG/gaT					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610281	81610281	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	238	429	0	ENST00000298171.2:c.1879G>T	p.Ala627Ser	p.A627S	ENST00000298171	NM_000369.2	627	Gct/Tct					NEWRECORD																																																																									
CD276	0	MSKCC	GRCh37	15	73995414	73995414	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	109	188	0	ENST00000318443.5:c.720G>T	p.Gln240His	p.Q240H	ENST00000318443	NM_001024736.1	240	caG/caT					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602877	10602877	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	303	407	0	ENST00000171111.5:c.701G>C	p.Arg234Pro	p.R234P	ENST00000171111	NM_203500.1	234	cGg/cCg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76944405	76944405	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009995-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	180	509	0	ENST00000373344.5:c.500G>T	p.Gly167Val	p.G167V	ENST00000373344	NM_000489.3	167	gGg/gTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	263	471	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0013013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	424	726	2	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11294208	11294208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	221	666	0	ENST00000361445.4:c.2323A>G	p.Ile775Val	p.I775V	ENST00000361445	NM_004958.3	775	Att/Gtt					NEWRECORD																																																																									
AURKB	0	MSKCC	GRCh37	17	8108616	8108616	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	61	652	0	ENST00000585124.1:c.779G>C	p.Gly260Ala	p.G260A	ENST00000585124	NM_004217.3	260	gGa/gCa					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15349762	15349762	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	44	207	0	ENST00000263377.2:c.3812A>T	p.Gln1271Leu	p.Q1271L	ENST00000263377	NM_058243.2	1271	cAg/cTg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139409143	139409170	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACACATGCTCCCTAAGGGCAGGGCGGG	TACACATGCTCCCTAAGGGCAGGGCGGG	-			P-0013013-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	186	469	0	ENST00000277541.6:c.2015-16_2026del		p.X672_splice	ENST00000277541	NM_017617.3	672						NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	409	355	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266125	41266125	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913413		P-0010309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			573	230	478	0	ENST00000349496.5:c.122C>T	p.Thr41Ile	p.T41I	ENST00000349496	NM_001904.3	41	aCc/aTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577565	7577565	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	351	466	0	ENST00000269305.4:c.716A>G	p.Asn239Ser	p.N239S	ENST00000269305	NM_001126112.2	239	aAc/aGc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11188183	11188183	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0010309-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	321	347	0	ENST00000361445.4:c.5911G>C	p.Ala1971Pro	p.A1971P	ENST00000361445	NM_004958.3	1971	Gcc/Ccc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	82	378	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46240692	46240695	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			585	72	378	0	ENST00000334344.6:c.1556_1559delATAG	p.Asp519ValfsTer9	p.D519Vfs*9	ENST00000334344	NM_152641.2	518	ATAGat/at					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246074	46246075	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	62	399	0	ENST00000334344.6:c.4170_4171del	p.Pro1392AsnfsTer18	p.P1392Nfs*18	ENST00000334344	NM_152641.2	1390	ATa/a					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11105652	11105654	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	116	706	0	ENST00000344626.4:c.1570_1572del	p.Lys524del	p.K524del	ENST00000344626	NM_003072.3	523	gAGAag/gag					NEWRECORD																																																																									
RRAS	0	MSKCC	GRCh37	19	50140165	50140165	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			613	133	584	0	ENST00000246792.3:c.260A>T	p.Gln87Leu	p.Q87L	ENST00000246792	NM_006270.3	87	cAg/cTg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164111	47164112	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	67	282	0	ENST00000409792.3:c.2014_2015del	p.Asn672TyrfsTer10	p.N672Yfs*10	ENST00000409792	NM_014159.6	672	AAt/t					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135787783	135787783	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014265-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			649	130	586	0	ENST00000298552.3:c.799A>G	p.Thr267Ala	p.T267A	ENST00000298552	NM_001162426.1	267	Aca/Gca					NEWRECORD																																																																									
CSDE1	0	MSKCC	GRCh37	1	115266502	115266502	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			893	84	318	0	ENST00000438362.2:c.2011+2T>G		p.X671_splice	ENST00000438362	NM_001242891.1	671						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578554	7578554	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1250	523	703	0	ENST00000269305.4:c.376T>C	p.Tyr126His	p.Y126H	ENST00000269305	NM_001126112.2	126	Tac/Cac					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29462632	29462632	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1111	370	532	0	ENST00000389048.3:c.2269G>A	p.Val757Met	p.V757M	ENST00000389048	NM_004304.4	757	Gtg/Atg					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202149946	202149946	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1166	132	440	2	ENST00000358485.4:c.1387G>A	p.Ala463Thr	p.A463T	ENST00000358485	NM_001080125.1	463	Gcc/Acc					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	80	387	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175480	112175480	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	62	262	1	ENST00000257430.4:c.4189G>T	p.Glu1397Ter	p.E1397*	ENST00000257430	NM_000038.5	1397	Gag/Tag					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36966548	36966548	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0014768-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	92	380	0	ENST00000358127.4:c.778C>T	p.Gln260Ter	p.Q260*	ENST00000358127	NM_001280556.1	260	Cag/Tag					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010140-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			527	142	424	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509652	106509652	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010140-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			682	51	546	0	ENST00000359195.3:c.1646A>G	p.Asn549Ser	p.N549S	ENST00000359195	NM_002649.2	549	aAc/aGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	926	535	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602328	10602328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	1163	425	0	ENST00000171111.5:c.1250G>T	p.Gly417Val	p.G417V	ENST00000171111	NM_203500.1	417	gGg/gTg					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26022398	26022398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	131	312	0	ENST00000435504.4:c.259G>A	p.Val87Met	p.V87M	ENST00000435504		87	Gtg/Atg					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55139816	55139816	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	284	352	1	ENST00000257290.5:c.1477G>A	p.Val493Met	p.V493M	ENST00000257290	NM_006206.4	493	Gtg/Atg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120423	94120423	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	917	615	0	ENST00000369303.4:c.628G>T	p.Glu210Ter	p.E210*	ENST00000369303	NM_004440.3	210	Gag/Tag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108168095	108168095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	477	354	0	ENST00000278616.4:c.4991A>G	p.Glu1664Gly	p.E1664G	ENST00000278616	NM_000051.3	1664	gAa/gGa					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112888162	112888162	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1363	362	467	0	ENST00000351677.2:c.178G>C	p.Gly60Arg	p.G60R	ENST00000351677	NM_002834.3	60	Ggt/Cgt					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28913396	28913396	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	727	391	0	ENST00000282397.4:c.2397G>T	p.Met799Ile	p.M799I	ENST00000282397	NM_002019.4	799	atG/atT					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49033822	49033822	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	585	343	0	ENST00000267163.4:c.1961-2A>G		p.X654_splice	ENST00000267163	NM_000321.2	654						NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73355129	73355129	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	367	247	0	ENST00000377767.4:c.241G>C	p.Glu81Gln	p.E81Q	ENST00000377767	NM_014953.3	81	Gag/Cag					NEWRECORD																																																																									
FAM175A	0	MSKCC	GRCh37	4	84384571	84384651	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GCGAGACTCCGTCTCAAAAATAAATAAATAAATAAAAATTTTTAGCACAGAAAGTAGAGATGTGTTGTTTACTTACTTGCT	GCGAGACTCCGTCTCAAAAATAAATAAATAAATAAAAATTTTTAGCACAGAAAGTAGAGATGTGTTGTTTACTTACTTGCT	-			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	184	78	0	ENST00000321945.7:c.792_796+76del		p.X264_splice	ENST00000321945	NM_139076.2	264						NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138199868	138199871	+	frameshift_variant	Frame_Shift_Del	DEL	GGCT	GGCT	-			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	244	235	0	ENST00000237289.4:c.1286_1289del	p.Gly429AlafsTer47	p.G429Afs*47	ENST00000237289	NM_001270507.1	429	gGGCTc/gc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220666	1220666	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010602-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	1329	470	0	ENST00000326873.7:c.685del	p.Asp229ThrfsTer58	p.D229Tfs*58	ENST00000326873	NM_000455.4	228	ctG/ct					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	260	524	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	111	337	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22127164	22127164	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	330	609	0	ENST00000215832.6:c.964G>A	p.Glu322Lys	p.E322K	ENST00000215832	NM_002745.4	322	Gag/Aag					NEWRECORD																																																																									
HRAS	3265	MSKCC	GRCh37	11	534289	534289	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs104894229		P-0012517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	253	549	1	ENST00000311189.7:c.34G>A	p.Gly12Ser	p.G12S	ENST00000311189		12	Ggc/Agc					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202131228	202131228	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	205	401	0	ENST00000358485.4:c.196C>G	p.Leu66Val	p.L66V	ENST00000358485	NM_001080125.1	66	Ctt/Gtt					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202131480	202131480	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	190	373	1	ENST00000358485.4:c.448C>T	p.Gln150Ter	p.Q150*	ENST00000358485	NM_001080125.1	150	Cag/Tag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117647403	117647403	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012517-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	337	799	0	ENST00000368508.3:c.5541T>A	p.Asn1847Lys	p.N1847K	ENST00000368508	NM_002944.2	1847	aaT/aaA					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112164616	112164616	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854574		P-0011195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	59	239	0	ENST00000257430.4:c.1690C>T	p.Arg564Ter	p.R564*	ENST00000257430	NM_000038.5	564	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175348	112175348	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	61	245	0	ENST00000257430.4:c.4057G>T	p.Glu1353Ter	p.E1353*	ENST00000257430	NM_000038.5	1353	Gaa/Taa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7576927	7576927	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T	rs587781702		P-0011195-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	139	330	0	ENST00000269305.4:c.920-1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	49	356	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	68	493	0	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	63	437	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135772068	135772068	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	14	156	1	ENST00000298552.3:c.3049G>A	p.Glu1017Lys	p.E1017K	ENST00000298552	NM_001162426.1	1017	Gag/Aag					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89346258	89346258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	36	453	0	ENST00000301030.4:c.6692C>T	p.Ala2231Val	p.A2231V	ENST00000301030	NM_001256183.1	2231	gCc/gTc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15271574	15271574	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	46	639	0	ENST00000263388.2:c.6865G>A	p.Ala2289Thr	p.A2289T	ENST00000263388	NM_000435.2	2289	Gcc/Acc					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12006489	12006495	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GAAGAAG	GAAGAAG	-			P-0012266-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	57	674	0	ENST00000396373.4:c.458_463+1del		p.EED153fs	ENST00000396373	NM_001987.4	153	GAAGAAGat/at					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220649	1220649	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	597	553	0	ENST00000326873.7:c.667G>T	p.Glu223Ter	p.E223*	ENST00000326873	NM_000455.4	223	Gag/Tag					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245350	153245350	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			416	254	488	0	ENST00000281708.4:c.1841T>C	p.Leu614Ser	p.L614S	ENST00000281708	NM_033632.3	614	tTa/tCa					NEWRECORD																																																																									
HIST1H3G	0	MSKCC	GRCh37	6	26271340	26271340	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	466	1099	0	ENST00000305910.3:c.273G>T	p.Met91Ile	p.M91I	ENST00000305910	NM_003534.2	91	atG/atT					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98232132	98232132	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	243	373	0	ENST00000331920.6:c.1810G>T	p.Glu604Ter	p.E604*	ENST00000331920	NM_000264.3	604	Gag/Tag					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102033240	102033240	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	514	479	0	ENST00000282441.5:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000282441	NM_001130145.2	209	cAg/cTg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48947629	48947629	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			63	231	267	0	ENST00000267163.4:c.1215+1G>C		p.X405_splice	ENST00000267163	NM_000321.2	405						NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40489480	40489480	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	385	708	0	ENST00000264657.5:c.770A>G	p.Asn257Ser	p.N257S	ENST00000264657	NM_139276.2	257	aAc/aGc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70356755	70356755	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	719	735	1	ENST00000374080.3:c.5427C>A	p.Ser1809Arg	p.S1809R	ENST00000374080		1809	agC/agA					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100629600	100629600	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	555	609	0	ENST00000308731.7:c.164C>A	p.Ser55Ter	p.S55*	ENST00000308731	NM_000061.2	55	tCa/tAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577154	7577158	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CACTA	CACTA	-			P-0011546-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			121	249	494	0	ENST00000269305.4:c.783-3_784del		p.X261_splice	ENST00000269305	NM_001126112.2	261						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012328-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	35	530	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	90	351	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012664-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	26	316	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49432497	49432497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	115	494	0	ENST00000301067.7:c.8642G>A	p.Arg2881Gln	p.R2881Q	ENST00000301067	NM_003482.3	2881	cGg/cAg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89348041	89348041	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	417	1158	0	ENST00000301030.4:c.4909A>T	p.Ile1637Phe	p.I1637F	ENST00000301030	NM_001256183.1	1637	Att/Ttt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29496921	29496921	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	79	356	0	ENST00000358273.4:c.492A>T	p.Leu164Phe	p.L164F	ENST00000358273	NM_001042492.2	164	ttA/ttT					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59858338	59858338	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	85	332	1	ENST00000259008.2:c.1657C>T	p.Gln553Ter	p.Q553*	ENST00000259008	NM_032043.2	553	Caa/Taa					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44942752	44942752	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	87	682	0	ENST00000377967.4:c.3332G>A	p.Arg1111His	p.R1111H	ENST00000377967	NM_021140.2	1111	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576855	7576856	+	stop_gained,splice_region_variant	Nonsense_Mutation	DNP	GA	GA	AT			P-0012919-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	207	542	0	ENST00000269305.4:c.990_991delinsAT	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	330	ctTCag/ctATag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	185	689	3	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	88	329	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17131402	17131402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	155	401	0	ENST00000285071.4:c.50G>A	p.Arg17His	p.R17H	ENST00000285071	NM_144997.5	17	cGc/cAc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259477	89259477	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs200567888		P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	70	572	0	ENST00000336596.2:c.621G>T	p.Lys207Asn	p.K207N	ENST00000336596	NM_005233.5	207	aaG/aaT					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178922321	178922321	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	181	351	0	ENST00000263967.3:c.1090G>A	p.Gly364Arg	p.G364R	ENST00000263967	NM_006218.2	364	Gga/Aga					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72076745	72076745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			944	210	741	0	ENST00000357731.5:c.752C>T	p.Pro251Leu	p.P251L	ENST00000357731	NM_173808.2	251	cCg/cTg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178917499	178917499	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	88	355	0	ENST00000263967.3:c.374T>A	p.Val125Glu	p.V125E	ENST00000263967	NM_006218.2	125	gTg/gAg					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41749389	41749389	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	131	332	0	ENST00000226382.2:c.406G>A	p.Asp136Asn	p.D136N	ENST00000226382	NM_003924.3	136	Gac/Aac					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112157605	112157605	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			783	120	414	0	ENST00000257430.4:c.1325T>A	p.Val442Asp	p.V442D	ENST00000257430	NM_000038.5	442	gTt/gAt					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007687	45007687	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	73	326	0	ENST00000558401.1:c.134G>T	p.Cys45Phe	p.C45F	ENST00000558401	NM_004048.2	45	tGc/tTc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9943676	9943676	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	94	425	0	ENST00000330684.3:c.1265T>A	p.Ile422Lys	p.I422K	ENST00000330684	NM_001134407.1	422	aTa/aAa					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10250430	10250430	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	408	492	2	ENST00000340748.4:c.3822C>A	p.Phe1274Leu	p.F1274L	ENST00000340748		1274	ttC/ttA					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41564539	41564539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	161	498	0	ENST00000263253.7:c.3961G>A	p.Val1321Ile	p.V1321I	ENST00000263253	NM_001429.3	1321	Gtc/Atc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53223467	53223467	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	198	587	0	ENST00000375401.3:c.3892T>G	p.Ser1298Ala	p.S1298A	ENST00000375401	NM_004187.3	1298	Tct/Gct					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007688	45007695	+	frameshift_variant	Frame_Shift_Del	DEL	CTATGTGT	CTATGTGT	-			P-0010125-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	60	329	0	ENST00000558401.1:c.137_144del	p.Tyr46TrpfsTer8	p.Y46Wfs*8	ENST00000558401	NM_004048.2	45	tgCTATGTGTct/tgct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	45	637	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115956	8115956	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	75	402	0	ENST00000346208.3:c.1305delC	p.Ser436ProfsTer39	p.S436Pfs*39	ENST00000346208		434	caC/ca					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99451943	99451943	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014251-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	84	429	2	ENST00000268035.6:c.1277A>G	p.Gln426Arg	p.Q426R	ENST00000268035	NM_000875.3	426	cAg/cGg					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93657854	93657854	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			438	160	489	0	ENST00000375746.1:c.1880G>A	p.Arg627His	p.R627H	ENST00000375746	NM_001174167.1	627	cGc/cAc					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193119433	193119433	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014937-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			340	584	314	0	ENST00000367435.3:c.829-1G>C		p.X277_splice	ENST00000367435	NM_024529.4	277						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	430	304	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577117	7577117	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	368	457	0	ENST00000269305.4:c.821T>A	p.Val274Asp	p.V274D	ENST00000269305	NM_001126112.2	274	gTt/gAt					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176710866	176710866	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1048	226	605	0	ENST00000439151.2:c.6088C>G	p.Gln2030Glu	p.Q2030E	ENST00000439151	NM_022455.4	2030	Cag/Gag					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32456396	32456396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	143	356	1	ENST00000332351.3:c.496G>A	p.Gly166Ser	p.G166S	ENST00000332351	NM_024426.4	166	Ggc/Agc					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57864396	57864396	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1375	219	776	2	ENST00000228682.2:c.1873G>A	p.Glu625Lys	p.E625K	ENST00000228682	NM_005269.2	625	Gag/Aag					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103506670	103506670	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	172	382	1	ENST00000355739.4:c.413G>A	p.Arg138Gln	p.R138Q	ENST00000355739	NM_000123.3	138	cGa/cAa					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158402	26158402	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	397	397	0	ENST00000289316.2:c.5C>T	p.Pro2Leu	p.P2L	ENST00000289316	NM_138720.2	2	cCt/cTt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692908	89692908	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	371	292	1	ENST00000371953.3:c.392C>A	p.Thr131Asn	p.T131N	ENST00000371953	NM_000314.4	131	aCt/aAt					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225367686	225367698	+	frameshift_variant	Frame_Shift_Del	DEL	GTTGCCTGTAGAT	GTTGCCTGTAGAT	-			P-0011088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	380	494	0	ENST00000264414.4:c.1469_1481del	p.His490LeufsTer5	p.H490Lfs*5	ENST00000264414	NM_003590.4	490	cATCTACAGGCAACt/ct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	169	603	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574021	7574021	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			568	73	720	2	ENST00000269305.4:c.1006G>T	p.Glu336Ter	p.E336*	ENST00000269305	NM_001126112.2	336	Gag/Tag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022616	31022616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	42	751	0	ENST00000375687.4:c.2101C>T	p.Pro701Ser	p.P701S	ENST00000375687	NM_015338.5	701	Cct/Tct					NEWRECORD																																																																									
ELF3	0	MSKCC	GRCh37	1	201981243	201981243	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	43	1027	0	ENST00000359651.3:c.322G>C	p.Glu108Gln	p.E108Q	ENST00000359651		108	Gag/Cag					NEWRECORD																																																																									
PRKD1	0	MSKCC	GRCh37	14	30046611	30046611	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			557	45	658	2	ENST00000331968.5:c.2572C>T	p.Arg858Cys	p.R858C	ENST00000331968	NM_002742.2	858	Cgc/Tgc					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1619361	1619361	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			497	32	524	0	ENST00000344749.5:c.1280C>G	p.Ser427Ter	p.S427*	ENST00000344749	NM_001136139.2	427	tCa/tGa					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10277291	10277291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	47	955	0	ENST00000340748.4:c.826G>A	p.Glu276Lys	p.E276K	ENST00000340748		276	Gaa/Aaa					NEWRECORD																																																																									
CALR	0	MSKCC	GRCh37	19	13054641	13054641	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			522	34	518	0	ENST00000316448.5:c.1168G>C	p.Asp390His	p.D390H	ENST00000316448	NM_004343.3	390	Gac/Cac					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198281550	198281550	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	43	593	0	ENST00000335508.6:c.581C>G	p.Ser194Ter	p.S194*	ENST00000335508	NM_012433.2	194	tCa/tGa					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561083	9561083	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	18	354	0	ENST00000353224.5:c.699A>C	p.Gln233His	p.Q233H	ENST00000353224	NM_177990.2	233	caA/caC					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117864207	117864207	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	37	500	0	ENST00000297338.2:c.1450G>C	p.Asp484His	p.D484H	ENST00000297338	NM_006265.2	484	Gac/Cac					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8492904	8492904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	45	509	1	ENST00000356435.5:c.2425G>T	p.Gly809Cys	p.G809C	ENST00000356435		809	Ggt/Tgt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039708	47039708	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014439-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			612	82	968	0	ENST00000329236.7:c.926G>T	p.Arg309Met	p.R309M	ENST00000329236	NM_001204466.1	309	aGg/aTg					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	95	95	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	906	521	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48018116	48018116	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	457	515	0	ENST00000234420.5:c.311C>T	p.Pro104Leu	p.P104L	ENST00000234420	NM_000179.2	104	cCc/cTc					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185183554	185183554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1378	392	419	0	ENST00000265026.3:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000265026	NM_004721.4	470	Gaa/Aaa					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86629108	86629108	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	395	357	2	ENST00000274376.6:c.853C>T	p.Arg285Ter	p.R285*	ENST00000274376	NM_002890.2	285	Cga/Tga					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180030257	180030257	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	800	623	2	ENST00000261937.6:c.4027C>A	p.Pro1343Thr	p.P1343T	ENST00000261937	NM_182925.4	1343	Cca/Aca					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371999	55371999	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	237	299	0	ENST00000297316.4:c.689T>C	p.Val230Ala	p.V230A	ENST00000297316	NM_022454.3	230	gTg/gCg					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5054682	5054682	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	405	369	0	ENST00000381652.3:c.734C>A	p.Ala245Asp	p.A245D	ENST00000381652	NM_004972.3	245	gCc/gAc					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111856604	111856604	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	313	251	1	ENST00000341259.2:c.655C>T	p.Arg219Cys	p.R219C	ENST00000341259	NM_005475.2	219	Cgc/Tgc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29548916	29548916	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			144	193	273	0	ENST00000358273.4:c.1690G>A	p.Asp564Asn	p.D564N	ENST00000358273	NM_001042492.2	564	Gat/Aat					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41743997	41743997	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	378	571	3	ENST00000301178.4:c.932G>T	p.Cys311Phe	p.C311F	ENST00000301178	NM_021913.4	311	tGc/tTc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39933413	39933413	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	336	482	0	ENST00000378444.4:c.1186G>T	p.Ala396Ser	p.A396S	ENST00000378444	NM_001123385.1	396	Gct/Tct					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76855928	76855929	+	missense_variant	Missense_Mutation	DNP	AG	AG	CT			P-0012633-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1078	215	607	0	ENST00000373344.5:c.5671_5672inv	p.Leu1891Arg	p.L1891R	ENST00000373344	NM_000489.3	1891	CTa/AGa					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010687-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	316	341	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	14	380	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46125048	46125048	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010279-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	56	472	0	ENST00000334344.6:c.235C>G	p.Pro79Ala	p.P79A	ENST00000334344	NM_152641.2	79	Ccc/Gcc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878530	151878530	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	227	602	0	ENST00000262189.6:c.6415C>T	p.Arg2139Ter	p.R2139*	ENST00000262189	NM_170606.2	2139	Cga/Tga					NEWRECORD																																																																									
PPM1D	8493	MSKCC	GRCh37	17	58740624	58740624	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs766595966		P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	418	989	6	ENST00000305921.3:c.1535del	p.Asn512IlefsTer2	p.N512Ifs*2	ENST00000305921	NM_003620.3	510	cAa/ca					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67588162	67588162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	184	334	0	ENST00000274335.5:c.992C>T	p.Ala331Val	p.A331V	ENST00000274335		331	gCt/gTt					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131976385	131976385	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	366	559	1	ENST00000265335.6:c.3640C>T	p.Arg1214Cys	p.R1214C	ENST00000265335		1214	Cgc/Tgc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943680	66943680	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	419	377	0	ENST00000374690.3:c.2760G>T	p.Gln920His	p.Q920H	ENST00000374690	NM_000044.3	920	caG/caT					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76889172	76889172	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	153	384	0	ENST00000373344.5:c.4838T>G	p.Leu1613Trp	p.L1613W	ENST00000373344	NM_000489.3	1613	tTg/tGg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119683	70119683	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1118	449	641	0	ENST00000245479.2:c.687del		p.X229_splice	ENST00000245479	NM_000346.3	229						NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436297	110436314	+	inframe_deletion	In_Frame_Del	DEL	CGGCGGCGGCGGCGGCGG	CGGCGGCGGCGGCGGCGG	-			P-0011296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	46	48	0	ENST00000375856.3:c.2087_2104del	p.Ala696_Ala701del	p.A696_A701del	ENST00000375856	NM_003749.2	696	gCCGCCGCCGCCGCCGCCGtg/gtg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			299	40	224	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67100651	67100651	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	155	510	0	ENST00000412916.2:c.349C>T	p.Gln117Ter	p.Q117*	ENST00000412916		117	Caa/Taa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16075230	16075230	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014856-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	99	433	0	ENST00000268712.3:c.322C>T	p.Arg108Ter	p.R108*	ENST00000268712	NM_006311.3	108	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	37	433	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	10	227	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112116592	112116592	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs587781392		P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	24	316	0	ENST00000257430.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000257430	NM_000038.5	213	Cga/Tga					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69625251	69625251	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs148203315		P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	39	689	1	ENST00000334134.2:c.542G>A	p.Arg181His	p.R181H	ENST00000334134	NM_005247.2	181	cGc/cAc					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149516594	149516594	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150173975		P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	38	601	3	ENST00000261799.4:c.17C>T	p.Ala6Val	p.A6V	ENST00000261799	NM_002609.3	6	gCg/gTg					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870780	12870780	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			263	23	212	0	ENST00000228872.4:c.7A>G	p.Asn3Asp	p.N3D	ENST00000228872	NM_004064.3	3	Aac/Gac					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98231194	98231194	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	27	402	0	ENST00000331920.6:c.2089del	p.Leu697SerfsTer49	p.L697Sfs*49	ENST00000331920	NM_000264.3	697	Ctc/tc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	210	611	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			232	243	629	0	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8636754	8636754	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	135	482	0	ENST00000356435.5:c.155G>T	p.Arg52Ile	p.R52I	ENST00000356435		52	aGa/aTa					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63850620	63850620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	25	251	1	ENST00000279873.7:c.1399-1G>T		p.X467_splice	ENST00000279873	NM_032199.2	467						NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597459	10597459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			359	256	829	0	ENST00000171111.5:c.1744G>A	p.Glu582Lys	p.E582K	ENST00000171111	NM_203500.1	582	Gag/Aag					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50905343	50905343	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			322	128	802	0	ENST00000440232.2:c.551G>T	p.Gly184Val	p.G184V	ENST00000440232	NM_002691.3	184	gGg/gTg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40899067	40899067	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	114	608	1	ENST00000373198.4:c.2203C>A	p.Pro735Thr	p.P735T	ENST00000373198	NM_133170.3	735	Ccg/Acg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306634	41306634	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	194	729	1	ENST00000373198.4:c.1025C>A	p.Ser342Tyr	p.S342Y	ENST00000373198	NM_133170.3	342	tCt/tAt					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54945663	54945663	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			239	14	301	0	ENST00000312783.6:c.907G>A	p.Gly303Ser	p.G303S	ENST00000312783	NM_198436.1	303	Ggt/Agt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651403	52651403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	161	598	0	ENST00000394830.3:c.1693C>T	p.Pro565Ser	p.P565S	ENST00000394830	NM_018313.4	565	Cca/Tca					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173789	112173789	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			376	103	371	0	ENST00000257430.4:c.2498G>T	p.Ser833Ile	p.S833I	ENST00000257430	NM_000038.5	833	aGc/aTc					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553793	106553793	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			268	120	389	0	ENST00000369096.4:c.1758G>C	p.Gln586His	p.Q586H	ENST00000369096	NM_001198.3	586	caG/caC					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467880	50467880	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	65	403	0	ENST00000331340.3:c.1115A>G	p.Asn372Ser	p.N372S	ENST00000331340	NM_006060.4	372	aAc/aGc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66937394	66937394	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014784-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	213	351	0	ENST00000374690.3:c.2248A>T	p.Met750Leu	p.M750L	ENST00000374690	NM_000044.3	750	Atg/Ttg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			270	241	227	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			674	216	405	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			263	668	500	0	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175390	112175390	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913328		P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			615	108	330	0	ENST00000257430.4:c.4099C>T	p.Gln1367Ter	p.Q1367*	ENST00000257430	NM_000038.5	1367	Cag/Tag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			336	415	449	3	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11298032	11298032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			577	413	631	0	ENST00000361445.4:c.2076C>G	p.Asn692Lys	p.N692K	ENST00000361445	NM_004958.3	692	aaC/aaG					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43597829	43597829	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			469	1211	870	0	ENST00000355710.3:c.377T>G	p.Phe126Cys	p.F126C	ENST00000355710	NM_020975.4	126	tTc/tGc					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123224453	123224453	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			677	421	421	2	ENST00000218089.9:c.3306G>T	p.Met1102Ile	p.M1102I	ENST00000218089	NM_001042749.1	1102	atG/atT					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133226456	133226523	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAGGCCTCGGCCATCGTGACCTGGAAAGACCCAGTGAAGCCTTAAATCTCAGGATCTCGGGCTGCGCA	GAGGCCTCGGCCATCGTGACCTGGAAAGACCCAGTGAAGCCTTAAATCTCAGGATCTCGGGCTGCGCA	-			P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			549	87	455	0	ENST00000320574.5:c.3583-48_3602del		p.X1195_splice	ENST00000320574	NM_006231.2	1195						NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55594095	55594095	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			249	206	399	0	ENST00000288135.5:c.1879+2T>C		p.X627_splice	ENST00000288135	NM_000222.2	627						NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98231142	98231142	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			378	175	343	0	ENST00000331920.6:c.2141A>T	p.Gln714Leu	p.Q714L	ENST00000331920	NM_000264.3	714	cAg/cTg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18658298	18658298	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			237	245	427	1	ENST00000266497.5:c.3103C>G	p.His1035Asp	p.H1035D	ENST00000266497		1035	Cac/Gac					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528361	157528361	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			538	330	616	0	ENST00000346085.5:c.6087del	p.Asn2030ThrfsTer6	p.N2030Tfs*6	ENST00000346085	NM_020732.3	2029	gCc/gc					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5221265	5221266	+	splice_acceptor_variant	Splice_Site	DNP	CT	CT	AA			P-0010098-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			376	161	340	1	ENST00000357368.4:c.3202-2_3202-1delinsTT		p.X1068_splice	ENST00000357368	NM_002850.3	1068						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	275	581	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135786926	135786926	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs185815387		P-0013438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	157	443	1	ENST00000298552.3:c.943T>A	p.Ser315Thr	p.S315T	ENST00000298552	NM_001162426.1	315	Tct/Act					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56489484	56489484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	516	435	0	ENST00000267101.3:c.1949C>T	p.Ala650Val	p.A650V	ENST00000267101	NM_001982.3	650	gCa/gTa					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37687065	37687065	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013438-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1182	214	680	0	ENST00000447079.4:c.3969G>C	p.Leu1323Phe	p.L1323F	ENST00000447079	NM_015083.1	1323	ttG/ttC					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0014123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	51	682	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685308	89685308	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014123-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	36	310	0	ENST00000371953.3:c.203A>G	p.Tyr68Cys	p.Y68C	ENST00000371953	NM_000314.4	68	tAc/tGc					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098945	178098945	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	165	299	0	ENST00000397062.3:c.100C>G	p.Arg34Gly	p.R34G	ENST00000397062	NM_006164.4	34	Cga/Gga					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49033971	49033971	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			214	211	290	0	ENST00000267163.4:c.2106+2T>A		p.X702_splice	ENST00000267163	NM_000321.2	702						NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66213784	66213784	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	194	385	0	ENST00000273854.3:c.2646G>T	p.Met882Ile	p.M882I	ENST00000273854	NM_004439.5	882	atG/atT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	DEL	C	C	-			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	285	372	0	ENST00000269305.4:c.375+1delG		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178096588	178096588	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	133	279	0	ENST00000397062.3:c.743A>G	p.Asn248Ser	p.N248S	ENST00000397062	NM_006164.4	248	aAt/aGt					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30681928	30681928	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	159	189	0	ENST00000376406.3:c.169G>A	p.Gly57Ser	p.G57S	ENST00000376406	NM_014641.2	57	Ggc/Agc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151900114	151900114	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	35	154	0	ENST00000262189.6:c.3997G>T	p.Glu1333Ter	p.E1333*	ENST00000262189	NM_170606.2	1333	Gaa/Taa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15961008	15961008	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	216	360	0	ENST00000268712.3:c.6212A>G	p.Gln2071Arg	p.Q2071R	ENST00000268712	NM_006311.3	2071	cAg/cGg					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39575959	39575959	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	51	201	0	ENST00000262039.4:c.891+1G>T		p.X297_splice	ENST00000262039	NM_002647.2	297						NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50902298	50902298	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012931-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1663	708	1892	1	ENST00000440232.2:c.190G>A	p.Gly64Arg	p.G64R	ENST00000440232	NM_002691.3	64	Ggg/Agg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	230	312	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			969	162	375	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0011326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1436	205	549	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15965141	15965141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	116	151	0	ENST00000268712.3:c.5455G>T	p.Asp1819Tyr	p.D1819Y	ENST00000268712	NM_006311.3	1819	Gat/Tat					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45867295	45867295	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	78	199	0	ENST00000391945.4:c.898G>A	p.Glu300Lys	p.E300K	ENST00000391945	NM_000400.3	300	Gag/Aag					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242467	55242481	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAA	AATTAAGAGAAGCAA	TTT			P-0011326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	431	404	0	ENST00000275493.2:c.2237_2251delinsTTT	p.Glu746_Thr751delinsValSer	p.E746_T751delinsVS	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAAca/gTTTca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	146	348	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0012054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	154	290	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	74	190	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	78	449	2	ENST00000342988.3:c.1081C>A	p.Arg361Ser	p.R361S	ENST00000342988	NM_005359.5	361	Cgc/Agc					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95590590	95590590	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	121	435	0	ENST00000343455.3:c.1319A>T	p.Asn440Ile	p.N440I	ENST00000343455	NM_177438.2	440	aAc/aTc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105243006	105243006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	114	360	0	ENST00000349310.3:c.277C>T	p.Pro93Ser	p.P93S	ENST00000349310	NM_001014432.1	93	Cct/Tct					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70119041	70119041	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	98	275	0	ENST00000245479.2:c.613A>T	p.Lys205Ter	p.K205*	ENST00000245479	NM_000346.3	205	Aag/Tag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266107	41266107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	35	282	0	ENST00000349496.5:c.104T>G	p.Ile35Ser	p.I35S	ENST00000349496	NM_001904.3	35	aTc/aGc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178714	112178714	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	40	371	0	ENST00000257430.4:c.7423A>G	p.Thr2475Ala	p.T2475A	ENST00000257430	NM_000038.5	2475	Act/Gct					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118372426	118372426	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013549-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	34	409	0	ENST00000534358.1:c.6359T>C	p.Ile2120Thr	p.I2120T	ENST00000534358	NM_005933.3	2120	aTa/aCa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	74	301	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	113	547	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5221161	5221161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	98	634	1	ENST00000357368.4:c.3305G>A	p.Arg1102His	p.R1102H	ENST00000357368	NM_002850.3	1102	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0013975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	142	506	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	293	581	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114910854	114910854	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	333	1239	2	ENST00000543371.1:c.973C>T	p.Gln325Ter	p.Q325*	ENST00000543371	NM_001198531.1	325	Cag/Tag					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56482377	56482377	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0013975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	78	816	0	ENST00000267101.3:c.925A>T	p.Lys309Ter	p.K309*	ENST00000267101	NM_001982.3	309	Aag/Tag					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041708	42041708	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	130	1067	2	ENST00000219905.7:c.5903T>A	p.Met1968Lys	p.M1968K	ENST00000219905	NM_001164273.1	1968	aTg/aAg					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67358654	67358656	+	inframe_deletion	In_Frame_Del	DEL	CAT	CAT	-			P-0013975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	233	919	0	ENST00000327367.4:c.164_166del	p.Ile55del	p.I55del	ENST00000327367	NM_005902.3	54	gcCATc/gcc					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45375020	45375020	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	72	465	0	ENST00000262160.6:c.823T>C	p.Cys275Arg	p.C275R	ENST00000262160	NM_005901.5	275	Tgt/Cgt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5274314	5274314	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	163	710	2	ENST00000357368.4:c.133G>A	p.Val45Met	p.V45M	ENST00000357368	NM_002850.3	45	Gtg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			638	277	814	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	235	705	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0014621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			345	145	548	0	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41573978	41573978	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014621-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	246	768	0	ENST00000263253.7:c.6263G>A	p.Arg2088Gln	p.R2088Q	ENST00000263253	NM_001429.3	2088	cGg/cAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	228	664	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	409	719	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67479811	67479811	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			309	756	803	1	ENST00000327367.4:c.1118G>A	p.Arg373His	p.R373H	ENST00000327367	NM_005902.3	373	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0014651-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			139	257	313	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0013812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	67	711	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56494882	56494882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	16	355	0	ENST00000267101.3:c.3239G>A	p.Arg1080His	p.R1080H	ENST00000267101	NM_001982.3	1080	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013761-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	53	459	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	183	557	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	62	486	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs587781991		P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	71	624	0	ENST00000269305.4:c.404G>A	p.Cys135Tyr	p.C135Y	ENST00000269305	NM_001126112.2	135	tGc/tAc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28919625	28919625	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			954	54	678	0	ENST00000282397.4:c.2312T>C	p.Leu771Pro	p.L771P	ENST00000282397	NM_002019.4	771	cTc/cCc					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2226062	2226062	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1350	89	701	0	ENST00000326181.6:c.1759G>A	p.Glu587Lys	p.E587K	ENST00000326181	NM_032271.2	587	Gag/Aag					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40757468	40757468	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	94	708	0	ENST00000373198.4:c.2830G>T	p.Asp944Tyr	p.D944Y	ENST00000373198	NM_133170.3	944	Gac/Tac					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76972655	76972655	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011504-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	89	955	1	ENST00000373344.5:c.86C>A	p.Ser29Tyr	p.S29Y	ENST00000373344	NM_000489.3	29	tCt/tAt					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			238	45	406	1	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011245-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	22	446	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	48	272	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			279	21	224	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	865	511	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578538	7578538	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs1131691037		P-0014158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	298	558	0	ENST00000269305.4:c.392A>T	p.Asn131Ile	p.N131I	ENST00000269305	NM_001126112.2	131	aAc/aTc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11193154	11193154	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	309	643	0	ENST00000361445.4:c.5347G>T	p.Asp1783Tyr	p.D1783Y	ENST00000361445	NM_004958.3	1783	Gac/Tac					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42035054	42035055	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0014158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	637	1210	0	ENST00000219905.7:c.4897_4898del	p.Thr1633HisfsTer6	p.T1633Hfs*6	ENST00000219905	NM_001164273.1	1632	gcCAcc/gccc					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138202274	138202274	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	272	474	1	ENST00000237289.4:c.2191G>T	p.Glu731Ter	p.E731*	ENST00000237289	NM_001270507.1	731	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578266	7578266	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	506	584	0	ENST00000269305.4:c.583A>T	p.Ile195Phe	p.I195F	ENST00000269305	NM_001126112.2	195	Atc/Ttc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs11540654		P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			593	523	627	0	ENST00000269305.4:c.329G>T	p.Arg110Leu	p.R110L	ENST00000269305	NM_001126112.2	110	cGt/cTt					NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36807439	36807439	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	236	613	0	ENST00000373129.3:c.1225C>T	p.Pro409Ser	p.P409S	ENST00000373129	NM_032017.1	409	Ccg/Tcg					NEWRECORD																																																																									
ELF3	0	MSKCC	GRCh37	1	201984417	201984417	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	731	677	0	ENST00000359651.3:c.1083del	p.Trp361Ter	p.W361*	ENST00000359651		361	tGg/tg					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333449	70333449	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	213	580	0	ENST00000373644.4:c.1357del	p.Gln453LysfsTer39	p.Q453Kfs*39	ENST00000373644	NM_030625.2	452	Ccc/cc					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2154882	2154882	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	489	660	0	ENST00000434045.2:c.339C>A	p.Ser113Arg	p.S113R	ENST00000434045	NM_001127598.1	113	agC/agA					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108127042	108127042	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	181	382	0	ENST00000278616.4:c.2225A>C	p.Lys742Thr	p.K742T	ENST00000278616	NM_000051.3	742	aAg/aCg					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870877	12870877	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	252	191	0	ENST00000228872.4:c.104C>T	p.Pro35Leu	p.P35L	ENST00000228872	NM_004064.3	35	cCg/cTg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28882977	28882977	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			82	737	577	0	ENST00000282397.4:c.3720+3A>T		p.X1240_splice	ENST00000282397	NM_002019.4	1240						NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544630	65544631	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	AA			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			37	335	427	0	ENST00000358664.4:c.295_295+1delinsTT		p.X99_splice	ENST00000358664	NM_002382.4	99						NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678397	88678397	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	268	706	1	ENST00000360948.2:c.1139C>A	p.Ala380Asp	p.A380D	ENST00000360948	NM_001012338.2	380	gCc/gAc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72821683	72821683	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			328	135	208	0	ENST00000268489.5:c.10492C>G	p.Gln3498Glu	p.Q3498E	ENST00000268489	NM_006885.3	3498	Caa/Gaa					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89350203	89350203	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	234	665	1	ENST00000301030.4:c.2747A>T	p.Asn916Ile	p.N916I	ENST00000301030	NM_001256183.1	916	aAc/aTc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16004817	16004817	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			937	288	514	0	ENST00000268712.3:c.2437C>T	p.Pro813Ser	p.P813S	ENST00000268712	NM_006311.3	813	Ccc/Tcc					NEWRECORD																																																																									
SOS1	0	MSKCC	GRCh37	2	39224440	39224440	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			723	540	537	0	ENST00000402219.2:c.2918A>T	p.Gln973Leu	p.Q973L	ENST00000402219	NM_005633.3	973	cAg/cTg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212251704	212251704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			287	409	303	0	ENST00000342788.4:c.3355G>C	p.Val1119Leu	p.V1119L	ENST00000342788	NM_005235.2	1119	Gtc/Ctc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41101180	41101180	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	369	466	0	ENST00000373198.4:c.1176C>A	p.Asn392Lys	p.N392K	ENST00000373198	NM_133170.3	392	aaC/aaA					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41385101	41385101	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	396	588	0	ENST00000373198.4:c.859+1G>T		p.X287_splice	ENST00000373198	NM_133170.3	287						NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259044	89259044	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	119	210	0	ENST00000336596.2:c.188C>A	p.Thr63Lys	p.T63K	ENST00000336596	NM_005233.5	63	aCa/aAa					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134851685	134851685	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	198	399	0	ENST00000398015.3:c.1091G>T	p.Arg364Leu	p.R364L	ENST00000398015	NM_004441.4	364	cGg/cTg					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142259791	142259791	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	557	549	2	ENST00000350721.4:c.3536G>T	p.Arg1179Ile	p.R1179I	ENST00000350721	NM_001184.3	1179	aGa/aTa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187518153	187518154	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AG			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			269	170	469	2	ENST00000441802.2:c.12540_12541delinsCT	p.Glu4181Ter	p.E4181*	ENST00000441802	NM_005245.3	4180	gcGGaa/gcCTaa					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729475	41729475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	1177	461	0	ENST00000242208.4:c.1054G>T	p.Gly352Cys	p.G352C	ENST00000242208	NM_002192.2	352	Ggt/Tgt					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50367286	50367286	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1126	381	365	1	ENST00000331340.3:c.93G>T	p.Met31Ile	p.M31I	ENST00000331340	NM_006060.4	31	atG/atT					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38283735	38283735	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	189	524	0	ENST00000425967.3:c.743T>C	p.Met248Thr	p.M248T	ENST00000425967	NM_001174067.1	248	aTg/aCg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974693	21974710	+	frameshift_variant	Frame_Shift_Del	DEL	CCGTAACTATTCGGTGCG	CCGTAACTATTCGGTGCG	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	330	420	0	ENST00000304494.5:c.117_134delinsA	p.Asn39LysfsTer75	p.N39Kfs*75	ENST00000304494	NM_000077.4	39	aaCGCACCGAATAGTTACGGt/aaAt					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974693	21974710	+	frameshift_variant	Frame_Shift_Del	DEL	CCGTAACTATTCGGTGCG	CCGTAACTATTCGGTGCG	T			P-0014813-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			67	330	420	0	ENST00000304494.5:c.117_134delinsA	p.Asn39LysfsTer75	p.N39Kfs*75	ENST00000304494	NM_000077.4	39	aaCGCACCGAATAGTTACGGt/aaAt					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	173	504	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	47	486	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175676	112175677	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	154	568	0	ENST00000257430.4:c.4393_4394del	p.Ser1465TrpfsTer3	p.S1465Wfs*3	ENST00000257430	NM_000038.5	1462	aAG/a					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	122	445	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	61	305	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174413	112174414	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	133	357	0	ENST00000257430.4:c.3123_3124del	p.Pro1043PhefsTer4	p.P1043Ffs*4	ENST00000257430	NM_000038.5	1041	cAA/c					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143191881	143191881	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs184155869		P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	155	784	1	ENST00000262992.4:c.550G>A	p.Val184Met	p.V184M	ENST00000262992	NM_001101669.1	184	Gtg/Atg					NEWRECORD																																																																									
HIST1H3C	0	MSKCC	GRCh37	6	26045696	26045696	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013020-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1608	201	1137	5	ENST00000540144.1:c.58C>A	p.Gln20Lys	p.Q20K	ENST00000540144	NM_003531.2	20	Cag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	208	484	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	227	761	0	ENST00000269305.4:c.820G>C	p.Val274Leu	p.V274L	ENST00000269305	NM_001126112.2	274	Gtt/Ctt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47158141	47158141	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	274	720	0	ENST00000409792.3:c.4558T>C	p.Cys1520Arg	p.C1520R	ENST00000409792	NM_014159.6	1520	Tgt/Cgt					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103510691	103510691	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	196	400	0	ENST00000355739.4:c.595G>A	p.Glu199Lys	p.E199K	ENST00000355739	NM_000123.3	199	Gaa/Aaa					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91347538	91347538	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	99	485	0	ENST00000355112.3:c.3700G>A	p.Gly1234Ser	p.G1234S	ENST00000355112	NM_000057.2	1234	Ggt/Agt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087050	27087401	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTTGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGTCAGAGGTTGCGATGAGCCGAGACGTGCCATTGCACTCCAGCCTGGGCAACGAGTGAAACACTGTCTCAAAAAAAAAAATTTTTTTTTTTAATAAAAATAGTATCATGACTAAAGAACGTGTGTGATGTATTTGCTCTTGGTTGTTTAAGGAAAATGCTAAGCAAGTAGTAGGATTATTGAAAGTAGAATCTTTCTGCCTAATATTACTAATCCATGTTCTTATATATATGTTCTAGGATCTATCTGGTTCAATAGATGACCTCCCCATGGGGACAGAAGGAGCTCTGAGTC	CTTGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGTCAGAGGTTGCGATGAGCCGAGACGTGCCATTGCACTCCAGCCTGGGCAACGAGTGAAACACTGTCTCAAAAAAAAAAATTTTTTTTTTTAATAAAAATAGTATCATGACTAAAGAACGTGTGTGATGTATTTGCTCTTGGTTGTTTAAGGAAAATGCTAAGCAAGTAGTAGGATTATTGAAAGTAGAATCTTTCTGCCTAATATTACTAATCCATGTTCTTATATATATGTTCTAGGATCTATCTGGTTCAATAGATGACCTCCCCATGGGGACAGAAGGAGCTCTGAGTC	-			P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2	66	2	0	ENST00000324856.7:c.1921-295_1977del		p.X641_splice	ENST00000324856	NM_006015.4	641						NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30133278	30133313	+	inframe_deletion	In_Frame_Del	DEL	TGATCTTCTTGATGGCCACGCGAGTCTTGCGCACGT	TGATCTTCTTGATGGCCACGCGAGTCTTGCGCACGT	-			P-0012143-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			964	275	903	0	ENST00000263025.4:c.185_220del	p.His62_Ser74delinsArg	p.H62_S74delinsR	ENST00000263025	NM_002746.2	62	cACGTGCGCAAGACTCGCGTGGCCATCAAGAAGATCAgc/cgc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175198	112175198	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	42	196	0	ENST00000257430.4:c.3907C>T	p.Gln1303Ter	p.Q1303*	ENST00000257430	NM_000038.5	1303	Caa/Taa					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1212	216	435	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108236086	108236086	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	73	420	0	ENST00000278616.4:c.9022C>T	p.Arg3008Cys	p.R3008C	ENST00000278616	NM_000051.3	3008	Cgt/Tgt					NEWRECORD																																																																									
TP53BP1	0	MSKCC	GRCh37	15	43713272	43713272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1324	84	661	1	ENST00000382044.4:c.4201C>T	p.Arg1401Cys	p.R1401C	ENST00000382044	NM_001141980.1	1401	Cgt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112162834	112162834	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			736	43	375	0	ENST00000257430.4:c.1438C>T	p.Gln480Ter	p.Q480*	ENST00000257430	NM_000038.5	480	Caa/Taa					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32184830	32184830	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150609093		P-0014456-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	48	394	1	ENST00000375023.3:c.1753C>T	p.Arg585Cys	p.R585C	ENST00000375023	NM_004557.3	585	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578191	7578191	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	581	367	0	ENST00000269305.4:c.658T>C	p.Tyr220His	p.Y220H	ENST00000269305	NM_001126112.2	220	Tat/Cat					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143026	30143026	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	613	488	0	ENST00000389048.3:c.500A>T	p.Gln167Leu	p.Q167L	ENST00000389048	NM_004304.4	167	cAg/cTg					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89499349	89499349	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	407	264	0	ENST00000336596.2:c.2519G>C	p.Gly840Ala	p.G840A	ENST00000336596	NM_005233.5	840	gGc/gCc					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149503912	149503912	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			30	413	228	0	ENST00000261799.4:c.1924A>G	p.Ser642Gly	p.S642G	ENST00000261799	NM_002609.3	642	Agc/Ggc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180056963	180056963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	461	502	0	ENST00000261937.6:c.656C>T	p.Pro219Leu	p.P219L	ENST00000261937	NM_182925.4	219	cCc/cTc					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117878902	117878902	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1828	622	624	0	ENST00000297338.2:c.67T>A	p.Trp23Arg	p.W23R	ENST00000297338	NM_006265.2	23	Tgg/Agg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420408	49420408	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	79	267	0	ENST00000301067.7:c.15341A>G	p.His5114Arg	p.H5114R	ENST00000301067	NM_003482.3	5114	cAt/cGt					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121432196	121432196	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			347	51	206	0	ENST00000257555.6:c.943A>C	p.Ser315Arg	p.S315R	ENST00000257555		315	Agt/Cgt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039351	49039351	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0010368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	887	503	0	ENST00000267163.4:c.2336T>A	p.Leu779Ter	p.L779*	ENST00000267163	NM_000321.2	779	tTg/tAg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76972617	76972617	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	301	616	0	ENST00000373344.5:c.124C>T	p.Gln42Ter	p.Q42*	ENST00000373344	NM_000489.3	42	Caa/Taa					NEWRECORD																																																																									
KMT2D	8085	MSKCC	GRCh37	12	49443641	49443641	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs1064794007		P-0010368-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	545	351	3	ENST00000301067.7:c.3730del	p.Val1244SerfsTer86	p.V1244Sfs*86	ENST00000301067	NM_003482.3	1244	Gtc/tc					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183771	10183771	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012378-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	101	383	1	ENST00000256474.2:c.240T>A	p.Ser80Arg	p.S80R	ENST00000256474	NM_000551.3	80	agT/agA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	101	244	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8106058	8106058	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	118	357	1	ENST00000346208.3:c.878T>A	p.Met293Lys	p.M293K	ENST00000346208		293	aTg/aAg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974730	21974730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	102	412	0	ENST00000304494.5:c.97G>T	p.Glu33Ter	p.E33*	ENST00000304494	NM_000077.4	33	Gag/Tag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974730	21974730	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	102	412	0	ENST00000304494.5:c.97G>T	p.Glu33Ter	p.E33*	ENST00000304494	NM_000077.4	33	Gag/Tag					NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	224	679	0	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49933743	49933743	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	172	727	1	ENST00000296474.3:c.2534G>A	p.Arg845Gln	p.R845Q	ENST00000296474	NM_002447.2	845	cGa/cAa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16255845	16255845	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	108	349	0	ENST00000375759.3:c.3110G>A	p.Arg1037Lys	p.R1037K	ENST00000375759	NM_015001.2	1037	aGa/aAa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112073	115112091	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCCCGAGACACCGGTGG	AGGCCCGAGACACCGGTGG	-			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	130	481	0	ENST00000257566.3:c.1649_1667del	p.Ser550TrpfsTer76	p.S550Wfs*76	ENST00000257566	NM_016569.3	550	tCCACCGGTGTCTCGGGCCTg/tg					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56780598	56780598	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	167	606	0	ENST00000337432.4:c.613C>T	p.Leu205Phe	p.L205F	ENST00000337432	NM_058216.2	205	Ctt/Ttt					NEWRECORD																																																																									
RAD51C	0	MSKCC	GRCh37	17	56780604	56780604	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	170	591	0	ENST00000337432.4:c.619C>G	p.His207Asp	p.H207D	ENST00000337432	NM_058216.2	207	Cat/Gat					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56414665	56414665	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	95	628	0	ENST00000348428.3:c.2066C>A	p.Ser689Ter	p.S689*	ENST00000348428	NM_006785.3	689	tCa/tAa					NEWRECORD																																																																									
FAM175A	0	MSKCC	GRCh37	4	84383704	84383704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	105	642	0	ENST00000321945.7:c.1148C>T	p.Ser383Phe	p.S383F	ENST00000321945	NM_139076.2	383	tCc/tTc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481417	140481417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			441	57	556	0	ENST00000288602.6:c.1391G>C	p.Gly464Ala	p.G464A	ENST00000288602	NM_004333.4	464	gGa/gCa					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76872120	76872120	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013647-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	218	718	0	ENST00000373344.5:c.5527C>G	p.Gln1843Glu	p.Q1843E	ENST00000373344	NM_000489.3	1843	Cag/Gag					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72495732	72495732	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	137	677	6	ENST00000477973.2:c.338T>G	p.Trp114Gly	p.W114G	ENST00000477973	NM_012234.5	114	Tgg/Ggg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			921	50	599	0	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	60	589	1	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46231437	46231437	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	34	349	2	ENST00000334344.6:c.1277C>T	p.Thr426Met	p.T426M	ENST00000334344	NM_152641.2	426	aCg/aTg					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46726436	46726436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139448277		P-0011581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	30	280	1	ENST00000371975.4:c.515G>A	p.Arg172His	p.R172H	ENST00000371975	NM_003579.3	172	cGc/cAc					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47703506	47703506	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	37	437	0	ENST00000233146.2:c.2006G>A	p.Gly669Asp	p.G669D	ENST00000233146	NM_000251.2	669	gGc/gAc					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120318	94120318	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs41273629		P-0011581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	57	688	0	ENST00000369303.4:c.733G>A	p.Ala245Thr	p.A245T	ENST00000369303	NM_004440.3	245	Gcc/Acc					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435111	110435111	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	37	274	0	ENST00000375856.3:c.3290G>T	p.Arg1097Leu	p.R1097L	ENST00000375856	NM_003749.2	1097	cGc/cTc					NEWRECORD																																																																									
CD276	0	MSKCC	GRCh37	15	73996096	73996096	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	58	489	1	ENST00000318443.5:c.830G>A	p.Ser277Asn	p.S277N	ENST00000318443	NM_001024736.1	277	aGc/aAc					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81934365	81934365	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200919414		P-0011581-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	71	602	0	ENST00000359376.3:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000359376	NM_002661.3	448	Cgg/Tgg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29652837	29652837	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	87	265	0	ENST00000358273.4:c.4836-1G>A		p.X1612_splice	ENST00000358273	NM_001042492.2	1612						NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992981	72992981	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	231	600	1	ENST00000268489.5:c.1064C>T	p.Ala355Val	p.A355V	ENST00000268489	NM_006885.3	355	gCt/gTt					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50920466	50920466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	227	368	13	ENST00000440232.2:c.3158G>A	p.Arg1053His	p.R1053H	ENST00000440232	NM_002691.3	1053	cGc/cAc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70356450	70356450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010725-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	156	379	1	ENST00000374080.3:c.5345G>A	p.Arg1782His	p.R1782H	ENST00000374080		1782	cGc/cAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	155	547	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900288	101900288	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1056	124	814	1	ENST00000374994.4:c.722C>T	p.Ser241Leu	p.S241L	ENST00000374994	NM_004612.2	241	tCg/tTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578206	7578206	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	260	906	0	ENST00000269305.4:c.643A>G	p.Ser215Gly	p.S215G	ENST00000269305	NM_001126112.2	215	Agt/Ggt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591846	48591846	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013391-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	179	769	3	ENST00000342988.3:c.1009G>T	p.Glu337Ter	p.E337*	ENST00000342988	NM_005359.5	337	Gag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	181	396	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	107	266	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971017	21971017	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	107	266	0	ENST00000304494.5:c.341C>T	p.Pro114Leu	p.P114L	ENST00000304494	NM_000077.4	114	cCc/cTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578449	7578449	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	261	342	0	ENST00000269305.4:c.481G>A	p.Ala161Thr	p.A161T	ENST00000269305	NM_001126112.2	161	Gcc/Acc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099397	27099397	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	181	413	3	ENST00000324856.7:c.3634C>T	p.Gln1212Ter	p.Q1212*	ENST00000324856	NM_006015.4	1212	Cag/Tag					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023943	27023943	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	40	50	0	ENST00000324856.7:c.1049C>A	p.Ser350Ter	p.S350*	ENST00000324856	NM_006015.4	350	tCg/tAg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89839769	89839769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	558	511	0	ENST00000389301.3:c.1924G>A	p.Glu642Lys	p.E642K	ENST00000389301	NM_000135.2	642	Gaa/Aaa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	629	513	1	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52719113	52719113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	395	357	0	ENST00000322088.6:c.889G>A	p.Glu297Lys	p.E297K	ENST00000322088	NM_014225.5	297	Gag/Aag					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29917824	29917824	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1332	214	499	0	ENST00000389048.3:c.844G>T	p.Asp282Tyr	p.D282Y	ENST00000389048	NM_004304.4	282	Gac/Tac					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86672713	86672713	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	291	335	3	ENST00000274376.6:c.2200G>T	p.Glu734Ter	p.E734*	ENST00000274376	NM_002890.2	734	Gaa/Taa					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158602	26158602	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	317	143	0	ENST00000289316.2:c.205G>C	p.Asp69His	p.D69H	ENST00000289316	NM_138720.2	69	Gac/Cac					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117631243	117631243	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	133	397	0	ENST00000368508.3:c.6434+1G>A		p.X2145_splice	ENST00000368508	NM_002944.2	2145						NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139410511	139410511	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	695	366	1	ENST00000277541.6:c.1591G>T	p.Glu531Ter	p.E531*	ENST00000277541	NM_017617.3	531	Gag/Tag					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115976	8115976	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	173	129	0	ENST00000346208.3:c.1322C>A	p.Ala441Asp	p.A441D	ENST00000346208		441	gCc/gAc					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119144609	119144609	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	194	404	0	ENST00000264033.4:c.622G>C	p.Ala208Pro	p.A208P	ENST00000264033	NM_005188.3	208	Gct/Cct					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49415936	49415936	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	386	333	0	ENST00000301067.7:c.16413-2A>T		p.X5471_splice	ENST00000301067	NM_003482.3	5471						NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63533039	63533039	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1231	264	513	1	ENST00000307078.5:c.1855G>A	p.Val619Ile	p.V619I	ENST00000307078	NM_004655.3	619	Gtc/Atc					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52719813	52719813	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010027-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1220	232	474	0	ENST00000322088.6:c.1025A>C	p.Lys342Thr	p.K342T	ENST00000322088	NM_014225.5	342	aAg/aCg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	191	544	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405575	70405575	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	93	392	0	ENST00000373644.4:c.3089A>G	p.Asn1030Ser	p.N1030S	ENST00000373644	NM_030625.2	1030	aAt/aGt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49420123	49420123	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	306	608	0	ENST00000301067.7:c.15626G>A	p.Gly5209Asp	p.G5209D	ENST00000301067	NM_003482.3	5209	gGc/gAc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2207615	2207615	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1168	270	919	0	ENST00000398665.3:c.899A>T	p.Lys300Met	p.K300M	ENST00000398665	NM_032482.2	300	aAg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	435	572	0	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765159	66765185	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCAGCA	-			P-0011377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	43	116	0	ENST00000374690.3:c.213_239del	p.Gln72_Gln80del	p.Q72_Q80del	ENST00000374690	NM_000044.3	57	ctGCAGCAGCAGCAGCAGCAGCAGCAGCAg/ctg					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42798450	42798450	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142012810		P-0011377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	321	481	1	ENST00000575354.2:c.4321C>T	p.Arg1441Cys	p.R1441C	ENST00000575354	NM_015125.3	1441	Cgt/Tgt					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060953	38060965	+	frameshift_variant	Frame_Shift_Del	DEL	CGCCCCCTGTCGC	CGCCCCCTGTCGC	-			P-0011377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	105	218	0	ENST00000250448.2:c.1024_1036del	p.Ala342ProfsTer4	p.A342Pfs*4	ENST00000250448	NM_004496.3	342	GCGACAGGGGGCGcc/cc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	71	698	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	48	331	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48649679	48649679	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150572851		P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			882	91	811	3	ENST00000376670.3:c.163G>A	p.Ala55Thr	p.A55T	ENST00000376670	NM_002049.3	55	Gct/Act					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945697	151945697	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	42	623	3	ENST00000262189.6:c.1822C>T	p.Gln608Ter	p.Q608*	ENST00000262189	NM_170606.2	608	Caa/Taa					NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			66	10	35	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851837	63851837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			690	83	663	0	ENST00000279873.7:c.2615C>T	p.Ser872Phe	p.S872F	ENST00000279873	NM_032199.2	872	tCc/tTc					NEWRECORD																																																																									
CDC42	0	MSKCC	GRCh37	1	22408248	22408248	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	21	332	2	ENST00000344548.3:c.139G>A	p.Gly47Ser	p.G47S	ENST00000344548	NM_001039802.1	47	Ggt/Agt					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118166002	118166006	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCC	ACTCC	-			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	66	357	0	ENST00000369448.3:c.513_517del	p.Ile173AlafsTer4	p.I173Afs*4	ENST00000369448	NM_017709.3	171	gACTCC/g					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156844774	156844774	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			823	55	634	1	ENST00000524377.1:c.1328G>T	p.Gly443Val	p.G443V	ENST00000524377	NM_002529.3	443	gGa/gTa					NEWRECORD																																																																									
SESN3	0	MSKCC	GRCh37	11	94911876	94911876	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			425	38	584	0	ENST00000536441.1:c.1054C>G	p.Gln352Glu	p.Q352E	ENST00000536441	NM_144665.3	352	Cag/Gag					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81819638	81819638	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	50	554	0	ENST00000359376.3:c.44A>T	p.Lys15Met	p.K15M	ENST00000359376	NM_002661.3	15	aAg/aTg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47098519	47098519	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			577	71	410	1	ENST00000409792.3:c.6755C>T	p.Ser2252Phe	p.S2252F	ENST00000409792	NM_014159.6	2252	tCc/tTc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643503	52643503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	56	454	0	ENST00000394830.3:c.2393G>A	p.Arg798Lys	p.R798K	ENST00000394830	NM_018313.4	798	aGa/aAa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142212078	142212078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	55	589	1	ENST00000350721.4:c.5974G>A	p.Glu1992Lys	p.E1992K	ENST00000350721	NM_001184.3	1992	Gag/Aag					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176524607	176524607	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			774	182	837	0	ENST00000292408.4:c.2339C>G	p.Ser780Cys	p.S780C	ENST00000292408	NM_213647.1	780	tCt/tGt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152332829	152332829	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	82	424	0	ENST00000206249.3:c.1135C>G	p.Leu379Val	p.L379V	ENST00000206249	NM_000125.3	379	Cta/Gta					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099173	157099173	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			394	61	360	1	ENST00000346085.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000346085	NM_020732.3	37	tCc/tTc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151884933	151884933	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			310	22	298	0	ENST00000262189.6:c.4661-1G>C		p.X1554_splice	ENST00000262189	NM_170606.2	1554						NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98240435	98240435	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014911-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			573	61	383	0	ENST00000331920.6:c.1249C>G	p.Gln417Glu	p.Q417E	ENST00000331920	NM_000264.3	417	Caa/Gaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0009276-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			783	62	552	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009276-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	116	661	2	ENST00000269305.4:c.422G>T	p.Cys141Phe	p.C141F	ENST00000269305	NM_001126112.2	141	tGc/tTc					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1293731	1293731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009276-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			509	48	392	0	ENST00000310581.5:c.1270G>T	p.Gly424Cys	p.G424C	ENST00000310581	NM_198253.2	424	Ggt/Tgt					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190719706	190719706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0009276-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			709	40	443	0	ENST00000441310.2:c.1708G>T	p.Val570Leu	p.V570L	ENST00000441310	NM_000534.4	570	Gta/Tta					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20159754	20159754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	447	488	0	ENST00000379607.5:c.5C>T	p.Pro2Leu	p.P2L	ENST00000379607	NM_001412.3	2	cCc/cTc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47084093	47084093	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	186	438	0	ENST00000409792.3:c.7196G>C	p.Arg2399Pro	p.R2399P	ENST00000409792	NM_014159.6	2399	cGa/cCa					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118376455	118376455	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010398-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	369	356	0	ENST00000534358.1:c.9848del	p.Arg3283GlnfsTer7	p.R3283Qfs*7	ENST00000534358	NM_005933.3	3283	cGa/ca					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247367	153247367	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	11	384	0	ENST00000281708.4:c.1435C>T	p.Arg479Ter	p.R479*	ENST00000281708	NM_033632.3	479	Cga/Tga					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70354255	70354255	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013809-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	81	466	1	ENST00000374080.3:c.4666G>A	p.Glu1556Lys	p.E1556K	ENST00000374080		1556	Gag/Aag					NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55594258	55594258	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913523		P-0012178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	155	482	0	ENST00000288135.5:c.1961T>C	p.Val654Ala	p.V654A	ENST00000288135	NM_000222.2	654	gTg/gCg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593576	55593606	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCACAGAAACCCATGTATGAAGTACAGTGGA	CCACAGAAACCCATGTATGAAGTACAGTGGA	-			P-0012178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	147	657	0	ENST00000288135.5:c.1648-6_1672del		p.X550_splice	ENST00000288135	NM_000222.2	550						NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165296	47165296	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	272	631	0	ENST00000409792.3:c.830T>C	p.Ile277Thr	p.I277T	ENST00000409792	NM_014159.6	277	aTt/aCt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	174	379	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149516607	149516607	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148272095		P-0010163-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	288	483	2	ENST00000261799.4:c.4C>T	p.Arg2Trp	p.R2W	ENST00000261799	NM_002609.3	2	Cgg/Tgg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0014860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			543	115	419	1	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936093	178936093	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014860-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			427	90	557	0	ENST00000263967.3:c.1635G>T	p.Glu545Asp	p.E545D	ENST00000263967	NM_006218.2	545	gaG/gaT					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266098	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	102	312	0	ENST00000349496.5:c.95A>T	p.Asp32Val	p.D32V	ENST00000349496	NM_001904.3	32	gAc/gTc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685269	89685269	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0014567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			158	29	193	0	ENST00000371953.3:c.165-1G>A		p.X55_splice	ENST00000371953	NM_000314.4	55						NEWRECORD																																																																									
SMYD3	0	MSKCC	GRCh37	1	246490640	246490640	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0014567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			247	32	314	0	ENST00000388985.4:c.395-1G>T		p.X132_splice	ENST00000388985		132						NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720818	89720823	+	inframe_deletion	In_Frame_Del	DEL	TGATCT	TGATCT	-			P-0014567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	95	390	0	ENST00000371953.3:c.972_977del	p.Leu325_Asp326del	p.L325_D326del	ENST00000371953	NM_000314.4	323	aaTGATCTt/aat					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645165	67645167	+	frameshift_variant	Frame_Shift_Del	DEL	AAA	AAA	TT			P-0014567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			744	162	649	1	ENST00000264010.4:c.430_432delinsTT	p.Lys144LeufsTer10	p.K144Lfs*10	ENST00000264010	NM_006565.3	144	AAA/TT					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589635	67589643	+	inframe_deletion	In_Frame_Del	DEL	ATATGAAGA	ATATGAAGA	-			P-0014567-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			182	34	296	0	ENST00000274335.5:c.1402_1410del	p.Glu468_Tyr470del	p.E468_Y470del	ENST00000274335		466	ttATATGAAGAa/tta					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578537	+	inframe_deletion	In_Frame_Del	DEL	TTG	TTG	-	rs879254214		P-0013344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	232	501	1	ENST00000269305.4:c.393_395del	p.Asn131del	p.N131del	ENST00000269305	NM_001126112.2	131	aaCAAg/aag					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589582	67589582	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	210	350	0	ENST00000274335.5:c.1345T>A	p.Leu449Ile	p.L449I	ENST00000274335		449	Tta/Ata					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55964332	55964332	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			798	350	768	0	ENST00000263923.4:c.2481G>A	p.Trp827Ter	p.W827*	ENST00000263923	NM_002253.2	827	tgG/tgA					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056562	26056562	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	157	229	0	ENST00000343677.2:c.95C>T	p.Pro32Leu	p.P32L	ENST00000343677	NM_005319.3	32	cCt/cTt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306653	41306653	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013344-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1615	271	652	0	ENST00000373198.4:c.1006G>C	p.Glu336Gln	p.E336Q	ENST00000373198	NM_133170.3	336	Gag/Cag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1071	198	429	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68857407	68857407	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0014830-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	244	471	0	ENST00000261769.5:c.2042T>G	p.Leu681Ter	p.L681*	ENST00000261769	NM_004360.3	681	tTa/tGa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	46	449	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			65	32	393	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	138	403	1	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593477	48593477	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	120	444	0	ENST00000342988.3:c.1228C>T	p.Gln410Ter	p.Q410*	ENST00000342988	NM_005359.5	410	Cag/Tag					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46715735	46715735	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	144	655	0	ENST00000371975.4:c.154C>T	p.Arg52Trp	p.R52W	ENST00000371975	NM_003579.3	52	Cgg/Tgg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108141792	108141792	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	127	547	0	ENST00000278616.4:c.2840A>G	p.Tyr947Cys	p.Y947C	ENST00000278616	NM_000051.3	947	tAt/tGt					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56492719	56492719	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	320	617	0	ENST00000407977.2:c.220G>T	p.Glu74Ter	p.E74*	ENST00000407977		74	Gaa/Taa					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198257856	198257856	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	149	636	0	ENST00000335508.6:c.3596T>G	p.Val1199Gly	p.V1199G	ENST00000335508	NM_012433.2	1199	gTt/gGt					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39933888	39933892	+	frameshift_variant	Frame_Shift_Del	DEL	GACTG	GACTG	-			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	318	721	0	ENST00000378444.4:c.707_711del	p.Pro236LeufsTer63	p.P236Lfs*63	ENST00000378444	NM_001123385.1	236	cCAGTC/c					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041648	47041648	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	273	627	0	ENST00000329236.7:c.1639G>T	p.Gly547Ter	p.G547*	ENST00000329236	NM_001204466.1	547	Gga/Tga					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66943658	66943658	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	103	767	0	ENST00000374690.3:c.2738A>G	p.Lys913Arg	p.K913R	ENST00000374690	NM_000044.3	913	aAg/aGg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	74	776	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68845682	68845682	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	74	865	1	ENST00000261769.5:c.928G>T	p.Glu310Ter	p.E310*	ENST00000261769	NM_004360.3	310	Gag/Tag					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481922	56481922	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			856	66	851	3	ENST00000267101.3:c.850G>A	p.Gly284Arg	p.G284R	ENST00000267101	NM_001982.3	284	Gga/Aga					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936095	178936095	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	61	818	0	ENST00000263967.3:c.1637A>G	p.Gln546Arg	p.Q546R	ENST00000263967	NM_006218.2	546	cAg/cGg					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128200073	128200073	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			851	69	925	1	ENST00000341105.2:c.1232C>T	p.Ala411Val	p.A411V	ENST00000341105	NM_032638.4	411	gCg/gTg					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8111472	8111473	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			711	58	709	0	ENST00000346208.3:c.959_960del	p.Cys320SerfsTer31	p.C320Sfs*31	ENST00000346208		320	TGt/t					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645923	67645923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015005-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			654	43	769	0	ENST00000264010.4:c.851A>G	p.His284Arg	p.H284R	ENST00000264010	NM_006565.3	284	cAc/cGc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112128163	112128164	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	129	451	1	ENST00000257430.4:c.666_667delinsTT	p.Gln222_Gln223delinsHisTer	p.Q222_Q223delinsH*	ENST00000257430	NM_000038.5	222	caGCaa/caTTaa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	167	563	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32178663	32178663	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs144069425		P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	154	447	2	ENST00000375023.3:c.2731G>A	p.Gly911Ser	p.G911S	ENST00000375023	NM_004557.3	911	Ggc/Agc					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139410162	139410162	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	76	174	1	ENST00000277541.6:c.1676C>T	p.Thr559Met	p.T559M	ENST00000277541	NM_017617.3	559	aCg/aTg					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851531	63851531	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	120	203	0	ENST00000279873.7:c.2309A>G	p.Asn770Ser	p.N770S	ENST00000279873	NM_032199.2	770	aAt/aGt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	225	366	0	ENST00000256078.4:c.34G>A	p.Gly12Ser	p.G12S	ENST00000256078	NM_033360.2	12	Ggt/Agt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46231144	46231144	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	123	498	0	ENST00000334344.6:c.1064T>A	p.Met355Lys	p.M355K	ENST00000334344	NM_152641.2	355	aTg/aAg					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114711025	114711025	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012100-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	171	311	0	ENST00000543371.1:c.250del	p.Glu84LysfsTer24	p.E84Kfs*24	ENST00000543371	NM_001198531.1	83	ttG/tt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	53	250	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	110	388	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1146	59	485	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93637007	93637007	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200167353		P-0012416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	120	439	4	ENST00000375746.1:c.1057G>A	p.Ala353Thr	p.A353T	ENST00000375746	NM_001174167.1	353	Gcg/Acg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	40	443	0	ENST00000269305.4:c.700T>C	p.Tyr234His	p.Y234H	ENST00000269305	NM_001126112.2	234	Tac/Cac					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398279	25398279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	45	418	0	ENST00000256078.4:c.40G>A	p.Val14Ile	p.V14I	ENST00000256078	NM_033360.2	14	Gta/Ata					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3110228	3110228	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1244	215	593	2	ENST00000078429.4:c.218G>A	p.Arg73His	p.R73H	ENST00000078429	NM_002067.2	73	cGc/cAc					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992580	72992580	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201757720		P-0012416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1661	98	850	0	ENST00000268489.5:c.1465G>A	p.Glu489Lys	p.E489K	ENST00000268489	NM_006885.3	489	Gag/Aag					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40500498	40500498	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012416-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1558	111	810	1	ENST00000264657.5:c.37C>T	p.Arg13Trp	p.R13W	ENST00000264657	NM_139276.2	13	Cgg/Tgg					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			213	340	402	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56189379	56189379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014486-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			712	332	445	0	ENST00000399503.3:c.4411C>T	p.Pro1471Ser	p.P1471S	ENST00000399503	NM_005921.1	1471	Cca/Tca					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156843506	156843506	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	80	413	0	ENST00000524377.1:c.932C>T	p.Pro311Leu	p.P311L	ENST00000524377	NM_002529.3	311	cCg/cTg					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713865	30713865	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	121	481	0	ENST00000359013.4:c.1265A>T	p.Asp422Val	p.D422V	ENST00000359013	NM_001024847.2	422	gAc/gTc					NEWRECORD																																																																									
PIM1	0	MSKCC	GRCh37	6	37140862	37140862	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1090	127	536	0	ENST00000373509.5:c.698A>G	p.Tyr233Cys	p.Y233C	ENST00000373509	NM_002648.3	233	tAt/tGt					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98212128	98212128	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	76	422	0	ENST00000331920.6:c.3544C>G	p.Pro1182Ala	p.P1182A	ENST00000331920	NM_000264.3	1182	Cct/Gct					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47428244	47428244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	40	549	0	ENST00000377045.4:c.1204G>A	p.Asp402Asn	p.D402N	ENST00000377045	NM_001654.4	402	Gac/Aac					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922904	39922905	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010661-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	114	669	0	ENST00000378444.4:c.3803_3804del	p.Arg1268LysfsTer8	p.R1268Kfs*8	ENST00000378444	NM_001123385.1	1268	aGA/a					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574034	7574034	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0011470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	436	553	0	ENST00000269305.4:c.994-1G>C		p.X332_splice	ENST00000269305	NM_001126112.2	332						NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151849870	151849870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	112	463	0	ENST00000262189.6:c.12446C>T	p.Pro4149Leu	p.P4149L	ENST00000262189	NM_170606.2	4149	cCa/cTa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68845727	68845727	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	190	432	1	ENST00000261769.5:c.973G>A	p.Val325Ile	p.V325I	ENST00000261769	NM_004360.3	325	Gtc/Atc					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40747892	40747892	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	186	589	1	ENST00000392038.2:c.526C>A	p.Arg176Ser	p.R176S	ENST00000392038	NM_001626.4	176	Cgc/Agc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48881492	48881502	+	frameshift_variant	Frame_Shift_Del	DEL	GAGAGAGCTTG	GAGAGAGCTTG	-			P-0011470-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	177	460	0	ENST00000267163.4:c.215_225del	p.Glu72ValfsTer34	p.E72Vfs*34	ENST00000267163	NM_000321.2	72	GAGAGAGCTTGg/g					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20156740	20156740	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	123	368	0	ENST00000379607.5:c.17G>A	p.Gly6Asp	p.G6D	ENST00000379607	NM_001412.3	6	gGt/gAt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27056352	27056352	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0010896-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			160	162	177	1	ENST00000324856.7:c.1348C>T	p.Gln450Ter	p.Q450*	ENST00000324856	NM_006015.4	450	Cag/Tag					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30038276	30038276	+	splice_donor_variant	Splice_Site	SNP	T	T	A			P-0012173-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	152	463	1	ENST00000338641.4:c.447+2T>A		p.X149_splice	ENST00000338641	NM_000268.3	149						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577580	7577580	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	224	519	0	ENST00000269305.4:c.701A>G	p.Tyr234Cys	p.Y234C	ENST00000269305	NM_001126112.2	234	tAc/tGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	253	505	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098962	178098962	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	264	409	0	ENST00000397062.3:c.83T>C	p.Ile28Thr	p.I28T	ENST00000397062	NM_006164.4	28	aTa/aCa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8331643	8331643	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1324	79	811	0	ENST00000356435.5:c.5473G>C	p.Gly1825Arg	p.G1825R	ENST00000356435		1825	Ggc/Cgc					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37070325	37070325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	67	714	2	ENST00000231790.2:c.1460G>A	p.Arg487Gln	p.R487Q	ENST00000231790	NM_000249.3	487	cGa/cAa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11205024	11205024	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	296	730	0	ENST00000361445.4:c.4764+1G>C		p.X1588_splice	ENST00000361445	NM_004958.3	1588						NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243828083	243828083	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			947	106	514	0	ENST00000263826.5:c.275C>A	p.Pro92Gln	p.P92Q	ENST00000263826	NM_005465.4	92	cCa/cAa					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41239908	41239908	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	116	210	0	ENST00000379561.5:c.442C>T	p.Gln148Ter	p.Q148*	ENST00000379561	NM_002015.3	148	Cag/Tag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9916256	9916256	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	200	625	2	ENST00000330684.3:c.2033C>A	p.Pro678Gln	p.P678Q	ENST00000330684	NM_001134407.1	678	cCa/cAa					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556276	29556276	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1093	297	714	0	ENST00000358273.4:c.2643G>A	p.Met881Ile	p.M881I	ENST00000358273	NM_001042492.2	881	atG/atA					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41574427	41574427	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	120	542	0	ENST00000263253.7:c.6712A>C	p.Asn2238His	p.N2238H	ENST00000263253	NM_001429.3	2238	Aat/Cat					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			74	314	347	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8521463	8521463	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	478	520	0	ENST00000356435.5:c.775G>T	p.Ala259Ser	p.A259S	ENST00000356435		259	Gcc/Tcc					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148507499	148507499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	157	328	0	ENST00000320356.2:c.1955C>T	p.Ser652Phe	p.S652F	ENST00000320356	NM_004456.4	652	tCt/tTt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16245963	16245963	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	339	629	0	ENST00000375759.3:c.1586C>T	p.Ser529Leu	p.S529L	ENST00000375759	NM_015001.2	529	tCa/tTa					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156843499	156843499	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	189	455	0	ENST00000524377.1:c.925C>A	p.Pro309Thr	p.P309T	ENST00000524377	NM_002529.3	309	Ccg/Acg					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215632251	215632251	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	207	612	0	ENST00000260947.4:c.1523A>T	p.Asp508Val	p.D508V	ENST00000260947	NM_000465.2	508	gAt/gTt					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6426872	6426872	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	425	583	0	ENST00000356142.4:c.65G>A	p.Ser22Asn	p.S22N	ENST00000356142	NM_018890.3	22	aGt/aAt					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	396665	396665	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	463	600	0	ENST00000262320.3:c.361T>A	p.Cys121Ser	p.C121S	ENST00000262320	NM_003502.3	121	Tgc/Agc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857404	9857404	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	416	551	0	ENST00000330684.3:c.3997T>C	p.Ser1333Pro	p.S1333P	ENST00000330684	NM_001134407.1	1333	Tca/Cca					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	85	454	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0012224-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	89	802	3	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207078	1207078	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	275	486	3	ENST00000326873.7:c.166G>T	p.Gly56Trp	p.G56W	ENST00000326873	NM_000455.4	56	Ggg/Tgg					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119148875	119148875	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	161	233	1	ENST00000264033.4:c.1096-1G>T		p.X366_splice	ENST00000264033	NM_005188.3	366						NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227660660	227660660	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	113	365	0	ENST00000305123.5:c.2795G>T	p.Arg932Ile	p.R932I	ENST00000305123	NM_005544.2	932	aGa/aTa					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242794461	242794461	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	105	359	0	ENST00000334409.5:c.481A>T	p.Arg161Trp	p.R161W	ENST00000334409	NM_005018.2	161	Agg/Tgg					NEWRECORD																																																																									
SHQ1	0	MSKCC	GRCh37	3	72861919	72861919	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	122	416	0	ENST00000325599.8:c.963G>T	p.Met321Ile	p.M321I	ENST00000325599	NM_018130.2	321	atG/atT					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2972201	2972201	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	127	427	2	ENST00000396946.4:c.1538C>A	p.Pro513His	p.P513H	ENST00000396946	NM_032415.4	513	cCc/cAc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8319853	8319853	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			606	138	555	0	ENST00000356435.5:c.5648G>T	p.Arg1883Leu	p.R1883L	ENST00000356435		1883	cGa/cTa					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69456232	69456232	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	238	420	0	ENST00000227507.2:c.151G>A	p.Glu51Lys	p.E51K	ENST00000227507	NM_053056.2	51	Gag/Aag					NEWRECORD																																																																									
PDPK1	0	MSKCC	GRCh37	16	2645794	2645794	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	142	463	0	ENST00000342085.4:c.1344G>T	p.Trp448Cys	p.W448C	ENST00000342085	NM_002613.4	448	tgG/tgT					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992190	72992190	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	159	578	0	ENST00000268489.5:c.1855C>G	p.His619Asp	p.H619D	ENST00000268489	NM_006885.3	619	Cat/Gat					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602442	10602442	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	246	372	0	ENST00000171111.5:c.1136G>A	p.Gly379Asp	p.G379D	ENST00000171111	NM_203500.1	379	gGc/gAc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11138491	11138491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	295	421	0	ENST00000344626.4:c.3247G>A	p.Glu1083Lys	p.E1083K	ENST00000344626	NM_003072.3	1083	Gag/Aag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9984908	9984909	+	stop_gained	Nonsense_Mutation	DNP	CC	CC	AA			P-0010947-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	150	592	0	ENST00000330684.3:c.1056_1057delinsTT	p.Glu352_Glu353delinsAspTer	p.E352_E353delinsD*	ENST00000330684	NM_001134407.1	352	gaGGaa/gaTTaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	158	663	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143174	30143174	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	68	425	0	ENST00000389048.3:c.352G>T	p.Ala118Ser	p.A118S	ENST00000389048	NM_004304.4	118	Gca/Tca					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149447852	149447852	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	101	659	0	ENST00000286301.3:c.1552G>C	p.Val518Leu	p.V518L	ENST00000286301	NM_005211.3	518	Gtg/Ctg					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50358684	50358684	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	47	223	0	ENST00000331340.3:c.27G>C	p.Met9Ile	p.M9I	ENST00000331340	NM_006060.4	9	atG/atC					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90967671	90967671	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	83	500	0	ENST00000265433.3:c.1237A>C	p.Asn413His	p.N413H	ENST00000265433	NM_002485.4	413	Aat/Cat					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759630	133759630	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	129	736	0	ENST00000318560.5:c.1953G>T	p.Leu651Phe	p.L651F	ENST00000318560	NM_005157.4	651	ttG/ttT					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108143545	108143545	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1213	137	619	0	ENST00000278616.4:c.3250C>T	p.Gln1084Ter	p.Q1084*	ENST00000278616	NM_000051.3	1084	Caa/Taa					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89839682	89839682	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	82	615	0	ENST00000389301.3:c.2011G>C	p.Asp671His	p.D671H	ENST00000389301	NM_000135.2	671	Gat/Cat					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29559830	29559830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	77	595	1	ENST00000358273.4:c.3427C>T	p.His1143Tyr	p.H1143Y	ENST00000358273	NM_001042492.2	1143	Cac/Tac					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29653151	29653151	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	76	373	0	ENST00000358273.4:c.5149G>T	p.Glu1717Ter	p.E1717*	ENST00000358273	NM_001042492.2	1717	Gag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29664506	29664506	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1063	123	536	0	ENST00000358273.4:c.6548G>T	p.Arg2183Leu	p.R2183L	ENST00000358273	NM_001042492.2	2183	cGg/cTg					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7163146	7163146	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1520	80	869	0	ENST00000302850.5:c.1926G>T	p.Trp642Cys	p.W642C	ENST00000302850	NM_000208.2	642	tgG/tgT					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40757396	40757396	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1325	98	756	1	ENST00000373198.4:c.2902G>T	p.Asp968Tyr	p.D968Y	ENST00000373198	NM_133170.3	968	Gac/Tac					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193219805	193219805	+	splice_acceptor_variant	Splice_Site	DEL	G	G	-			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	59	347	0	ENST00000367435.3:c.1560del		p.X520_splice	ENST00000367435	NM_024529.4	520						NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212537896	212537897	+	missense_variant	Missense_Mutation	DNP	TG	TG	GT			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	69	536	0	ENST00000342788.4:c.1708_1709delinsAC	p.His570Thr	p.H570T	ENST00000342788	NM_005235.2	570	CAt/ACt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610118	10610121	+	frameshift_variant	Frame_Shift_Del	DEL	CCAC	CCAC	GTA			P-0013142-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	156	666	0	ENST00000171111.5:c.589_592delinsTAC	p.Val197TyrfsTer33	p.V197Yfs*33	ENST00000171111	NM_203500.1	197	GTGGag/TACag					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	108	399	0	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	245	336	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20156742	20156742	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0010685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	235	262	0	ENST00000379607.5:c.17-2A>C		p.X6_splice	ENST00000379607	NM_001412.3	6						NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68857532	68857532	+	splice_region_variant,intron_variant	Splice_Region	SNP	A	A	C			P-0013640-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	85	274	0	ENST00000261769.5:c.2164+3A>C		p.X722_splice	ENST00000261769	NM_004360.3	722						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	61	246	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	121	391	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
DCUN1D1	0	MSKCC	GRCh37	3	182665032	182665032	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	165	656	1	ENST00000292782.4:c.694G>T	p.Glu232Ter	p.E232*	ENST00000292782	NM_020640.2	232	Gaa/Taa					NEWRECORD																																																																									
SOCS1	0	MSKCC	GRCh37	16	11348732	11348732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	157	671	0	ENST00000332029.2:c.604G>A	p.Asp202Asn	p.D202N	ENST00000332029	NM_003745.1	202	Gac/Aac					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48649631	48649631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012805-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	173	822	0	ENST00000376670.3:c.115G>C	p.Glu39Gln	p.E39Q	ENST00000376670	NM_002049.3	39	Gag/Cag					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242470	55242487	+	inframe_deletion	In_Frame_Del	DEL	TAAGAGAAGCAACATCTC	TAAGAGAAGCAACATCTC	-	rs121913438		P-0013534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	81	533	0	ENST00000275493.2:c.2240_2257del	p.Leu747_Pro753delinsSer	p.L747_P753delinsS	ENST00000275493	NM_005228.3	747	tTAAGAGAAGCAACATCTCcg/tcg					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044942	47044943	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	TT			P-0013534-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	65	544	2	ENST00000329236.7:c.2034_2035delinsTT	p.Trp678_Gln679delinsCysTer	p.W678_Q679delinsC*	ENST00000329236	NM_001204466.1	678	tgGCag/tgTTag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578455	7578460	+	inframe_deletion	In_Frame_Del	DEL	CGCGGA	CGCGGA	-			P-0011255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	261	437	0	ENST00000269305.4:c.470_475delTCCGCG	p.Val157_Arg158del	p.V157_R158del	ENST00000269305	NM_001126112.2	157	gTCCGCGcc/gcc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0011255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	117	517	0	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0011255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	79	354	0	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55371941	55371941	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	395	217	0	ENST00000297316.4:c.631G>A	p.Ala211Thr	p.A211T	ENST00000297316	NM_022454.3	211	Gcg/Acg					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21555714	21555714	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1384	369	660	0	ENST00000382592.4:c.2556C>A	p.Asp852Glu	p.D852E	ENST00000382592	NM_014572.2	852	gaC/gaA					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911779	32911779	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011255-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1153	178	862	0	ENST00000380152.3:c.3287A>G	p.Asp1096Gly	p.D1096G	ENST00000380152		1096	gAt/gGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011451-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	851	412	2	ENST00000269305.4:c.824G>C	p.Cys275Ser	p.C275S	ENST00000269305	NM_001126112.2	275	tGt/tCt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27059230	27059230	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011451-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	455	395	0	ENST00000324856.7:c.1867G>C	p.Gly623Arg	p.G623R	ENST00000324856	NM_006015.4	623	Gga/Cga					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143102	30143102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011451-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	357	434	1	ENST00000389048.3:c.424G>A	p.Val142Met	p.V142M	ENST00000389048	NM_004304.4	142	Gtg/Atg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	122	370	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108128265	108128265	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	102	352	0	ENST00000278616.4:c.2308G>T	p.Glu770Ter	p.E770*	ENST00000278616	NM_000051.3	770	Gaa/Taa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108218037	108218037	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	50	289	0	ENST00000278616.4:c.8616T>A	p.His2872Gln	p.H2872Q	ENST00000278616	NM_000051.3	2872	caT/caA					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32910538	32910538	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			448	37	233	0	ENST00000380152.3:c.2046C>G	p.Ile682Met	p.I682M	ENST00000380152		682	atC/atG					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103514445	103514445	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			354	26	198	2	ENST00000355739.4:c.946G>T	p.Gly316Cys	p.G316C	ENST00000355739	NM_000123.3	316	Ggc/Tgc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42054416	42054416	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			539	66	335	0	ENST00000219905.7:c.7600G>T	p.Gly2534Ter	p.G2534*	ENST00000219905	NM_001164273.1	2534	Gga/Tga					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678620	88678620	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	33	222	0	ENST00000360948.2:c.916C>A	p.Arg306Ser	p.R306S	ENST00000360948	NM_001012338.2	306	Cgt/Agt					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2133711	2133711	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1060	84	471	0	ENST00000219476.3:c.3899T>C	p.Met1300Thr	p.M1300T	ENST00000219476	NM_000548.3	1300	aTg/aCg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89874771	89874771	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1083	112	423	0	ENST00000389301.3:c.527C>G	p.Ser176Cys	p.S176C	ENST00000389301	NM_000135.2	176	tCt/tGt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610446	10610449	+	frameshift_variant	Frame_Shift_Del	DEL	TGCA	TGCA	-			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			826	190	486	0	ENST00000171111.5:c.261_264del	p.Ala88ArgfsTer68	p.A88Rfs*68	ENST00000171111	NM_203500.1	87	gaTGCA/ga					NEWRECORD																																																																									
MLL4	0	MSKCC	GRCh37	19	36217179	36217179	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1392	153	547	0	ENST00000222270.7:c.3928C>G	p.Pro1310Ala	p.P1310A	ENST00000222270	NM_014727.1	1310	Cca/Gca					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45868193	45868193	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1401	138	652	0	ENST00000391945.4:c.497G>T	p.Arg166Leu	p.R166L	ENST00000391945	NM_000400.3	166	cGt/cTt					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225422431	225422431	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			611	72	389	0	ENST00000264414.4:c.209G>C	p.Gly70Ala	p.G70A	ENST00000264414	NM_003590.4	70	gGa/gCa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89468438	89468438	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			407	133	291	0	ENST00000336596.2:c.1972G>T	p.Gly658Cys	p.G658C	ENST00000336596	NM_005233.5	658	Ggc/Tgc					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106197588	106197588	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	132	284	0	ENST00000380013.4:c.5921G>T	p.Arg1974Met	p.R1974M	ENST00000380013	NM_001127208.2	1974	aGg/aTg					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143159150	143159150	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	22	215	0	ENST00000262992.4:c.703G>T	p.Val235Leu	p.V235L	ENST00000262992	NM_001101669.1	235	Gta/Tta					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27102076	27102076	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014546-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	68	433	1	ENST00000324856.7:c.5002G>T	p.Glu1668Ter	p.E1668*	ENST00000324856	NM_006015.4	1668	Gag/Tag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	480	509	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772218	68772218	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	577	627	0	ENST00000261769.5:c.67C>T	p.Gln23Ter	p.Q23*	ENST00000261769	NM_004360.3	23	Cag/Tag					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117755	70117755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014826-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	315	581	1	ENST00000245479.2:c.223G>A	p.Glu75Lys	p.E75K	ENST00000245479	NM_000346.3	75	Gag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	99	484	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220694	1220694	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	100	526	0	ENST00000326873.7:c.712A>T	p.Ile238Phe	p.I238F	ENST00000326873	NM_000455.4	238	Atc/Ttc					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2979527	2979527	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	107	642	0	ENST00000396946.4:c.720G>T	p.Glu240Asp	p.E240D	ENST00000396946	NM_032415.4	240	gaG/gaT					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133215710	133215710	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	81	447	1	ENST00000320574.5:c.5552+1G>T		p.X1851_splice	ENST00000320574	NM_006231.2	1851						NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911800	32911800	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	171	877	0	ENST00000380152.3:c.3308T>C	p.Leu1103Ser	p.L1103S	ENST00000380152		1103	tTa/tCa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47684689	47684689	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	86	546	0	ENST00000347630.2:c.760A>T	p.Met254Leu	p.M254L	ENST00000347630	NM_001007230.1	254	Atg/Ttg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610090	10610090	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	100	534	0	ENST00000171111.5:c.620T>G	p.Ile207Ser	p.I207S	ENST00000171111	NM_203500.1	207	aTc/aGc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610100	10610100	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010632-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	111	568	0	ENST00000171111.5:c.610C>G	p.Arg204Gly	p.R204G	ENST00000171111	NM_203500.1	204	Cgg/Ggg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	104	313	0	ENST00000269305.4:c.536A>T	p.His179Leu	p.H179L	ENST00000269305	NM_001126112.2	179	cAt/cTt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955514	48955514	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0011034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	119	397	0	ENST00000267163.4:c.1630A>T	p.Arg544Ter	p.R544*	ENST00000267163	NM_000321.2	544	Aga/Tga					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43804985	43804985	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	185	417	0	ENST00000372470.3:c.435C>A	p.Ser145Arg	p.S145R	ENST00000372470	NM_005373.2	145	agC/agA					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085626	16085626	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	86	317	0	ENST00000281043.3:c.802G>C	p.Asp268His	p.D268H	ENST00000281043	NM_005378.4	268	Gat/Cat					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151878998	151878998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1044	219	424	0	ENST00000262189.6:c.5947G>A	p.Gly1983Ser	p.G1983S	ENST00000262189	NM_170606.2	1983	Ggc/Agc					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64137706	64137706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	171	482	0	ENST00000334205.4:c.1807C>A	p.Leu603Met	p.L603M	ENST00000334205	NM_003942.2	603	Ctg/Atg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133209348	133209348	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	193	518	0	ENST00000320574.5:c.6038A>T	p.Asp2013Val	p.D2013V	ENST00000320574	NM_006231.2	2013	gAc/gTc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3820696	3820696	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			775	327	427	0	ENST00000262367.5:c.2755C>T	p.Gln919Ter	p.Q919*	ENST00000262367	NM_004380.2	919	Cag/Tag					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15290943	15290943	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1333	218	524	0	ENST00000263388.2:c.3267G>T	p.Leu1089Phe	p.L1089F	ENST00000263388	NM_000435.2	1089	ttG/ttT					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45655262	45655262	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011034-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	129	410	0	ENST00000407780.3:c.590A>T	p.Tyr197Phe	p.Y197F	ENST00000407780	NM_001283052.1	197	tAt/tTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25380275	25380275	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs17851045		P-0010741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	124	371	0	ENST00000256078.4:c.183A>C	p.Gln61His	p.Q61H	ENST00000256078	NM_033360.2	61	caA/caC					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56491647	56491647	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	95	427	0	ENST00000267101.3:c.2539C>G	p.Gln847Glu	p.Q847E	ENST00000267101	NM_001982.3	847	Cag/Gag					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554428	63554428	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	71	385	0	ENST00000307078.5:c.311G>A	p.Cys104Tyr	p.C104Y	ENST00000307078	NM_004655.3	104	tGc/tAc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47032525	47032525	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0010741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	94	264	0	ENST00000329236.7:c.202-2A>G		p.X68_splice	ENST00000329236	NM_001204466.1	68						NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76891514	76891514	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	44	278	0	ENST00000373344.5:c.4591T>C	p.Cys1531Arg	p.C1531R	ENST00000373344	NM_000489.3	1531	Tgt/Cgt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47127796	47127797	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0010741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	68	230	0	ENST00000409792.3:c.5285_5286del	p.His1762LeufsTer26	p.H1762Lfs*26	ENST00000409792	NM_014159.6	1762	cAC/c					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0010853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	30	168	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971116	21971116	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs11552823		P-0010853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	30	168	0	ENST00000304494.5:c.242C>T	p.Pro81Leu	p.P81L	ENST00000304494	NM_000077.4	81	cCc/cTc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857895	9857895	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010853-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	53	398	2	ENST00000330684.3:c.3506G>A	p.Arg1169Gln	p.R1169Q	ENST00000330684	NM_001134407.1	1169	cGg/cAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	145	463	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108155138	108155138	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs200976093		P-0013167-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	154	511	1	ENST00000278616.4:c.3931C>T	p.Gln1311Ter	p.Q1311*	ENST00000278616	NM_000051.3	1311	Caa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	101	322	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0011124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	225	490	1	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175162	112175162	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			98	41	140	1	ENST00000257430.4:c.3871C>T	p.Gln1291Ter	p.Q1291*	ENST00000257430	NM_000038.5	1291	Cag/Tag					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97934342	97934342	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			339	119	396	0	ENST00000289081.3:c.433T>G	p.Tyr145Asp	p.Y145D	ENST00000289081	NM_000136.2	145	Tac/Gac					NEWRECORD																																																																									
IGF2	0	MSKCC	GRCh37	11	2161391	2161391	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	104	477	0	ENST00000434045.2:c.136C>T	p.Arg46Cys	p.R46C	ENST00000434045	NM_001127598.1	46	Cgc/Tgc					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243551	46243551	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011124-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	69	266	0	ENST00000334344.6:c.1904C>A	p.Ser635Ter	p.S635*	ENST00000334344	NM_152641.2	635	tCa/tAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			253	846	490	1	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48951058	48951059	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	-			P-0014328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			69	159	252	0	ENST00000267163.4:c.1220_1221del	p.Cys407TyrfsTer20	p.C407Yfs*20	ENST00000267163	NM_000321.2	407	tGC/t					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88472561	88472561	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			810	539	475	1	ENST00000360948.2:c.1994C>T	p.Ser665Leu	p.S665L	ENST00000360948	NM_001012338.2	665	tCg/tTg					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176696613	176696613	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			291	308	221	0	ENST00000439151.2:c.5314G>T	p.Ala1772Ser	p.A1772S	ENST00000439151	NM_022455.4	1772	Gct/Tct					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27840093	27840093	+	start_lost	Translation_Start_Site	SNP	T	T	C			P-0014328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			458	249	193	0	ENST00000328488.2:c.1A>G	p.Met1?	p.M1?	ENST00000328488	NM_003533.2	1	Atg/Gtg					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101908874	101908874	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014328-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	718	548	0	ENST00000374994.4:c.1238G>T	p.Arg413Leu	p.R413L	ENST00000374994	NM_004612.2	413	cGa/cTa					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143029303	143029303	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012099-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	207	294	0	ENST00000262992.4:c.2317A>T	p.Asn773Tyr	p.N773Y	ENST00000262992	NM_001101669.1	773	Aac/Tac					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0010943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			40	226	403	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372311	55372311	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010943-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	215	224	0	ENST00000297316.4:c.1001C>T	p.Ser334Leu	p.S334L	ENST00000297316	NM_022454.3	334	tCg/tTg					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	104	340	0	ENST00000397062.3:c.70T>C	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Cgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	138	351	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49427306	49427306	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	111	274	0	ENST00000301067.7:c.11182A>G	p.Met3728Val	p.M3728V	ENST00000301067	NM_003482.3	3728	Atg/Gtg					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23634293	23634293	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs45551636		P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			799	166	571	1	ENST00000261584.4:c.2993G>A	p.Gly998Glu	p.G998E	ENST00000261584	NM_024675.3	998	gGa/gAa					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89857917	89857917	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			305	82	255	0	ENST00000389301.3:c.1253C>T	p.Ala418Val	p.A418V	ENST00000389301	NM_000135.2	418	gCa/gTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577566	7577566	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	139	396	0	ENST00000269305.4:c.715A>G	p.Asn239Asp	p.N239D	ENST00000269305	NM_001126112.2	239	Aac/Gac					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411459	63411461	+	inframe_deletion	In_Frame_Del	DEL	ACA	ACA	-			P-0010355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	231	814	0	ENST00000330258.3:c.1706_1708del	p.Leu569del	p.L569del	ENST00000330258	NM_152424.3	569	tTGTat/tat					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	303	504	2	ENST00000361445.4:c.6644C>T	p.Ser2215Phe	p.S2215F	ENST00000361445	NM_004958.3	2215	tCt/tTt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628248	187628248	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200097846		P-0010660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	51	313	0	ENST00000441802.2:c.2734G>A	p.Val912Ile	p.V912I	ENST00000441802	NM_005245.3	912	Gtt/Att					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	265	482	0	ENST00000349496.5:c.101G>T	p.Gly34Val	p.G34V	ENST00000349496	NM_001904.3	34	gGa/gTa					NEWRECORD																																																																									
XIAP	0	MSKCC	GRCh37	X	123019534	123019534	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	202	495	0	ENST00000355640.3:c.22G>A	p.Gly8Arg	p.G8R	ENST00000355640		8	Gga/Aga					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185190944	185190944	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1289	100	758	1	ENST00000265026.3:c.1825C>A	p.Gln609Lys	p.Q609K	ENST00000265026	NM_004721.4	609	Cag/Aag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711965	89711965	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	456	295	0	ENST00000371953.3:c.583T>C	p.Phe195Leu	p.F195L	ENST00000371953	NM_000314.4	195	Ttt/Ctt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42052635	42052635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	332	647	0	ENST00000219905.7:c.7306C>A	p.Arg2436Ser	p.R2436S	ENST00000219905	NM_001164273.1	2436	Cgt/Agt					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41546176	41546176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	82	140	0	ENST00000263253.7:c.2791del	p.Leu931CysfsTer15	p.L931Cfs*15	ENST00000263253	NM_001429.3	931	Ctg/tg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27097654	27097655	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0010660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	314	602	0	ENST00000324856.7:c.3245_3246del	p.Val1082GlyfsTer22	p.V1082Gfs*22	ENST00000324856	NM_006015.4	1081	aaTGtg/aatg					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589581	67589596	+	inframe_deletion	In_Frame_Del	DEL	ATTACATGAATATAAC	ATTACATGAATATAAC	C			P-0010660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	168	264	0	ENST00000274335.5:c.1344_1358delATTACATGAATATAA	p.Lys448_Tyr452del	p.K448_Y452del	ENST00000274335		448	aaATTACATGAATATAAC/aaC					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711942	89711965	+	frameshift_variant	Frame_Shift_Del	DEL	ATTATAGACCAGTGGCACTGTTGT	ATTATAGACCAGTGGCACTGTTGT	C			P-0010660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			293	451	375	0	ENST00000371953.3:c.560_583delinsC	p.Asp187AlafsTer7	p.D187Afs*7	ENST00000371953	NM_000314.4	187	gATTATAGACCAGTGGCACTGTTGTtt/gCtt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	319	402	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	70	252	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72830596	72830596	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010554-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	307	1070	0	ENST00000268489.5:c.5985C>G	p.Ile1995Met	p.I1995M	ENST00000268489	NM_006885.3	1995	atC/atG					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			537	273	395	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	282	434	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
EIF4E	0	MSKCC	GRCh37	4	99808239	99808239	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	309	678	0	ENST00000280892.6:c.450G>T	p.Trp150Cys	p.W150C	ENST00000280892	NM_001130678.1	150	tgG/tgT					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5029801	5029801	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	235	396	1	ENST00000381652.3:c.245A>T	p.His82Leu	p.H82L	ENST00000381652	NM_004972.3	82	cAt/cTt					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53228325	53228325	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	175	554	0	ENST00000375401.3:c.2077G>T	p.Glu693Ter	p.E693*	ENST00000375401	NM_004187.3	693	Gag/Tag					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986786	36986920	+	inframe_deletion	In_Frame_Del	DEL	CTGGCACGGTTTGCCGTCTTTCACCAGGACCGGCACCGCCACGCGTCGCGGCGACTGCTGCTGAGCCTGTTGCTGCTGCGGGCACCCGGTGCCCCCGCCGCCCCCGCCGCCGCCGCTGTCCTGCTGCAGTTGCTG	CTGGCACGGTTTGCCGTCTTTCACCAGGACCGGCACCGCCACGCGTCGCGGCGACTGCTGCTGAGCCTGTTGCTGCTGCGGGCACCCGGTGCCCCCGCCGCCCCCGCCGCCGCCGCTGTCCTGCTGCAGTTGCTG	-			P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	387	107	0	ENST00000354822.5:c.769_903del	p.Gln257_Gln301del	p.Q257_Q301del	ENST00000354822	NM_001079668.2	257	CAGCAACTGCAGCAGGACAGCGGCGGCGGCGGGGGCGGCGGGGGCACCGGGTGCCCGCAGCAGCAACAGGCTCAGCAGCAGTCGCCGCGACGCGTGGCGGTGCCGGTCCTGGTGAAAGACGGCAAACCGTGCCAG/-					NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56400646	56400647	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	319	655	1	ENST00000348428.3:c.1240_1241delinsTT	p.Gly414Leu	p.G414L	ENST00000348428	NM_006785.3	414	GGa/TTa					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134977932	134977932	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012650-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	71	457	0	ENST00000398015.3:c.2925G>C	p.Gln975His	p.Q975H	ENST00000398015	NM_004441.4	975	caG/caC					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952074	178952074	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913283		P-0014406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			699	117	357	0	ENST00000263967.3:c.3129G>A	p.Met1043Ile	p.M1043I	ENST00000263967	NM_006218.2	1043	atG/atA					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67063667	67063667	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014406-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			743	129	443	0	ENST00000412916.2:c.116A>G	p.Glu39Gly	p.E39G	ENST00000412916		39	gAa/gGa					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15289874	15289874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	368	320	0	ENST00000263388.2:c.3680G>A	p.Gly1227Asp	p.G1227D	ENST00000263388	NM_000435.2	1227	gGc/gAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			23	806	471	0	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49039133	49039133	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			10	206	173	0	ENST00000267163.4:c.2212-1G>C		p.X738_splice	ENST00000267163	NM_000321.2	738						NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	468	406	1	ENST00000262367.5:c.4337G>T	p.Arg1446Leu	p.R1446L	ENST00000262367	NM_004380.2	1446	cGc/cTc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55984940	55984940	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	289	433	0	ENST00000263923.4:c.189G>A	p.Trp63Ter	p.W63*	ENST00000263923	NM_002253.2	63	tgG/tgA					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66201758	66201758	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	266	420	1	ENST00000273854.3:c.2744G>A	p.Trp915Ter	p.W915*	ENST00000273854	NM_004439.5	915	tGg/tAg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187584470	187584470	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			6	122	310	0	ENST00000441802.2:c.3563C>A	p.Ser1188Ter	p.S1188*	ENST00000441802	NM_005245.3	1188	tCa/tAa					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86667940	86667940	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			16	650	393	0	ENST00000274376.6:c.1704G>C	p.Trp568Cys	p.W568C	ENST00000274376	NM_002890.2	568	tgG/tgC					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180053212	180053212	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	255	539	1	ENST00000261937.6:c.1157T>C	p.Leu386Pro	p.L386P	ENST00000261937	NM_182925.4	386	cTc/cCc					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138192637	138192637	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	211	303	1	ENST00000237289.4:c.273G>T	p.Lys91Asn	p.K91N	ENST00000237289	NM_001270507.1	91	aaG/aaT					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509381	106509381	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	868	478	0	ENST00000359195.3:c.1375C>T	p.Gln459Ter	p.Q459*	ENST00000359195	NM_002649.2	459	Cag/Tag					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89347623	89347623	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			34	837	703	0	ENST00000301030.4:c.5327G>T	p.Ser1776Ile	p.S1776I	ENST00000301030	NM_001256183.1	1776	aGc/aTc					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39617655	39617655	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	301	301	2	ENST00000262039.4:c.1840-1G>T		p.X614_splice	ENST00000262039	NM_002647.2	614						NEWRECORD																																																																									
MALT1	0	MSKCC	GRCh37	18	56402519	56402519	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	386	396	0	ENST00000348428.3:c.1561G>C	p.Glu521Gln	p.E521Q	ENST00000348428	NM_006785.3	521	Gaa/Caa					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36252965	36252965	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			201	403	349	0	ENST00000300305.3:c.397A>T	p.Met133Leu	p.M133L	ENST00000300305		133	Atg/Ttg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70348217	70348217	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	341	612	1	ENST00000374080.3:c.3281G>C	p.Gly1094Ala	p.G1094A	ENST00000374080		1094	gGa/gCa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70357425	70357425	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012600-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	364	662	1	ENST00000374080.3:c.5766G>T	p.Leu1922Phe	p.L1922F	ENST00000374080		1922	ttG/ttT					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45858926	45858926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			951	54	717	0	ENST00000391945.4:c.1540A>T	p.Ile514Phe	p.I514F	ENST00000391945	NM_000400.3	514	Att/Ttt					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8111472	8111512	+	frameshift_variant	Frame_Shift_Del	DEL	TGTCAGACCACCACAACCACACTCTGGAGGAGGAATGCCAA	TGTCAGACCACCACAACCACACTCTGGAGGAGGAATGCCAA	-			P-0010277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1041	97	601	0	ENST00000346208.3:c.960_1000del	p.Cys320TrpfsTer18	p.C320Wfs*18	ENST00000346208		320	TGTCAGACCACCACAACCACACTCTGGAGGAGGAATGCCAAt/t					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014067-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	44	499	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	28	306	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	28	306	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	28	306	0	ENST00000304494.5:c.322G>A	p.Asp108Asn	p.D108N	ENST00000304494	NM_000077.4	108	Gat/Aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577574	7577574	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	167	500	0	ENST00000269305.4:c.707A>G	p.Tyr236Cys	p.Y236C	ENST00000269305	NM_001126112.2	236	tAc/tGc					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45395776	45395776	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	74	409	1	ENST00000262160.6:c.358C>T	p.Arg120Ter	p.R120*	ENST00000262160	NM_005901.5	120	Cga/Tga					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39933640	39933640	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	97	640	1	ENST00000378444.4:c.959C>T	p.Ala320Val	p.A320V	ENST00000378444	NM_001123385.1	320	gCg/gTg					NEWRECORD																																																																									
HIST1H3J	0	MSKCC	GRCh37	6	27858279	27858279	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1373	89	1356	1	ENST00000359303.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000359303	NM_003535.2	98	Gag/Aag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108150318	108150318	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011386-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	45	450	0	ENST00000278616.4:c.3385G>A	p.Glu1129Lys	p.E1129K	ENST00000278616	NM_000051.3	1129	Gaa/Aaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	201	475	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13935508	13935508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	37	317	1	ENST00000405192.2:c.1348G>A	p.Glu450Lys	p.E450K	ENST00000405192	NM_001163147.1	450	Gaa/Aaa					NEWRECORD																																																																									
TP63	8626	MSKCC	GRCh37	3	189612028	189612028	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	40	464	0	ENST00000264731.3:c.1780C>T	p.Arg594Ter	p.R594*	ENST00000264731	NM_003722.4	594	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578485	7578485	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	181	543	0	ENST00000269305.4:c.445del	p.Ser149ProfsTer21	p.S149Pfs*21	ENST00000269305	NM_001126112.2	149	Tcc/cc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509060	106509060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	53	506	0	ENST00000359195.3:c.1054G>A	p.Val352Met	p.V352M	ENST00000359195	NM_002649.2	352	Gtg/Atg					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521733	89521733	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	43	497	0	ENST00000336596.2:c.2810A>T	p.Tyr937Phe	p.Y937F	ENST00000336596	NM_005233.5	937	tAc/tTc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521720	89521724	+	missense_variant	Missense_Mutation	ONP	ACGGG	ACGGG	CCGGT			P-0013907-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	49	550	0	ENST00000336596.2:c.2797_2801delinsCCGGT	p.Thr933_Gly934delinsProVal	p.T933_G934delinsPV	ENST00000336596	NM_005233.5	933	ACGGGt/CCGGTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	199	334	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49934818	49934818	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			503	369	628	0	ENST00000296474.3:c.2078T>C	p.Phe693Ser	p.F693S	ENST00000296474	NM_002447.2	693	tTt/tCt					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20487032	20487032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0010669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	235	311	0	ENST00000346618.3:c.997G>C	p.Glu333Gln	p.E333Q	ENST00000346618	NM_001949.4	333	Gag/Cag					NEWRECORD																																																																									
XIAP	0	MSKCC	GRCh37	X	123020254	123020254	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010669-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	141	417	0	ENST00000355640.3:c.742A>T	p.Arg248Trp	p.R248W	ENST00000355640		248	Agg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	124	399	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0010383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	184	576	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577530	7577530	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	207	491	0	ENST00000269305.4:c.751A>T	p.Ile251Phe	p.I251F	ENST00000269305	NM_001126112.2	251	Atc/Ttc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266450	41266450	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	49	440	0	ENST00000349496.5:c.247G>A	p.Asp83Asn	p.D83N	ENST00000349496	NM_001904.3	83	Gat/Aat					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575689	48575689	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	94	433	0	ENST00000342988.3:c.449G>T	p.Ser150Ile	p.S150I	ENST00000342988	NM_005359.5	150	aGt/aTt					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89445069	89445767	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TAATGGGATCATATTGGACTACGAGGTCAAATACTATGAAAAGGTGGGGAAACAATGTTTAAGGGTTGGGCTGTGTAGGCAAGAAGCTGTTTCCTCATGAGCTGTGCTCTTGCAAAGAAACCAGTGACATTCCTGGTAAATGGTAGAGCACTGTTTAGAACTGTGGCCCTGTGACCCCTTTGATTTATTGGTAGAGGAAGGTTTAGAAAGAATCTTGTTGAATACCCCCTATTCTACAGCAATAAACAACATCAAAGATGCCACTGCCAACTTAATCCAGTTACTTATGGCAATAGCATGACATTTATCTCCCTTTACACCAAGACCCCTACTCTACCAACTATTTTATTGTGGTTTCTTAGTCTATTTGTGAACTGTTTTTTTAGTTCATTGCCTCAAGCATCATTTCCTGACCTTCAAATTTACATGCATTTCATTCAATACAAATAGCAACATTGTGCTAGTAAGAAAAATATTGTATTATTTAACTGATGATGAAAAGATTTTCTTGACCCTGTAGAAGGAAATTTAAAAGGTTGGGGATAGATGGATAAATTTGCGTGACATAAAGTTGTGGCTTGGTAATGCAATTATTAAAAAAAATAGGCACATGGTTATTTTTACCCCAAATTTAAAAATTATTAAAAAATAGTTATGTGGTTATTTTGCCCTGAGTGGAGTGGCGAGTATTCCATCATT	TAATGGGATCATATTGGACTACGAGGTCAAATACTATGAAAAGGTGGGGAAACAATGTTTAAGGGTTGGGCTGTGTAGGCAAGAAGCTGTTTCCTCATGAGCTGTGCTCTTGCAAAGAAACCAGTGACATTCCTGGTAAATGGTAGAGCACTGTTTAGAACTGTGGCCCTGTGACCCCTTTGATTTATTGGTAGAGGAAGGTTTAGAAAGAATCTTGTTGAATACCCCCTATTCTACAGCAATAAACAACATCAAAGATGCCACTGCCAACTTAATCCAGTTACTTATGGCAATAGCATGACATTTATCTCCCTTTACACCAAGACCCCTACTCTACCAACTATTTTATTGTGGTTTCTTAGTCTATTTGTGAACTGTTTTTTTAGTTCATTGCCTCAAGCATCATTTCCTGACCTTCAAATTTACATGCATTTCATTCAATACAAATAGCAACATTGTGCTAGTAAGAAAAATATTGTATTATTTAACTGATGATGAAAAGATTTTCTTGACCCTGTAGAAGGAAATTTAAAAGGTTGGGGATAGATGGATAAATTTGCGTGACATAAAGTTGTGGCTTGGTAATGCAATTATTAAAAAAAATAGGCACATGGTTATTTTTACCCCAAATTTAAAAATTATTAAAAAATAGTTATGTGGTTATTTTGCCCTGAGTGGAGTGGCGAGTATTCCATCATT	-			P-0010383-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	67	500	0	ENST00000336596.2:c.1389_1431+656del		p.X463_splice	ENST00000336596	NM_005233.5	463						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578440	7578440	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	200	358	0	ENST00000269305.4:c.490A>G	p.Lys164Glu	p.K164E	ENST00000269305	NM_001126112.2	164	Aag/Gag					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28610163	28610163	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	139	502	0	ENST00000241453.7:c.1327G>A	p.Ala443Thr	p.A443T	ENST00000241453	NM_004119.2	443	Gca/Aca					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16085875	16085875	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	139	302	0	ENST00000281043.3:c.1051A>C	p.Lys351Gln	p.K351Q	ENST00000281043	NM_005378.4	351	Aag/Cag					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87482169	87482169	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201028496		P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	74	438	0	ENST00000277120.3:c.1456G>A	p.Val486Ile	p.V486I	ENST00000277120		486	Gtt/Att					NEWRECORD																																																																									
FGF19	0	MSKCC	GRCh37	11	69518577	69518577	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	12	168	1	ENST00000294312.3:c.68G>T	p.Arg23Leu	p.R23L	ENST00000294312	NM_005117.2	23	cGc/cTc					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134508	41134508	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	80	950	3	ENST00000379561.5:c.1120C>A	p.Leu374Ile	p.L374I	ENST00000379561	NM_002015.3	374	Ctt/Att					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100611132	100611132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	48	534	0	ENST00000308731.7:c.1474C>T	p.Arg492Cys	p.R492C	ENST00000308731	NM_000061.2	492	Cgc/Tgc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	421	530	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	364	470	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562750	21562750	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	183	290	3	ENST00000382592.4:c.1169C>T	p.Pro390Leu	p.P390L	ENST00000382592	NM_014572.2	390	cCg/cTg					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56865795	56865795	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	817	1062	2	ENST00000308159.5:c.1127G>T	p.Arg376Leu	p.R376L	ENST00000308159	NM_014669.4	376	cGt/cTt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041372	47041372	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0013382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	762	546	0	ENST00000329236.7:c.1482C>G	p.Tyr494Ter	p.Y494*	ENST00000329236	NM_001204466.1	494	taC/taG					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42005513	42005517	+	frameshift_variant	Frame_Shift_Del	DEL	GAAAA	GAAAA	-			P-0013382-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	710	1107	0	ENST00000219905.7:c.3255_3259del	p.Arg1085SerfsTer5	p.R1085Sfs*5	ENST00000219905	NM_001164273.1	1083	ttGAAAAga/ttga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1033	270	426	1	ENST00000269305.4:c.725G>T	p.Cys242Phe	p.C242F	ENST00000269305	NM_001126112.2	242	tGc/tTc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28602329	28602329	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			890	74	333	0	ENST00000241453.7:c.2039C>T	p.Ala680Val	p.A680V	ENST00000241453	NM_004119.2	680	gCg/gTg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29509639	29509639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	283	453	1	ENST00000358273.4:c.844C>T	p.Gln282Ter	p.Q282*	ENST00000358273	NM_001042492.2	282	Cag/Tag					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78422295	78422295	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			831	372	279	0	ENST00000370768.2:c.1667delC	p.Pro556LeufsTer109	p.P556Lfs*109	ENST00000370768	NM_003902.3	556	cCt/ct					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10274195	10274195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			680	43	315	0	ENST00000330684.3:c.74C>T	p.Ala25Val	p.A25V	ENST00000330684	NM_001134407.1	25	gCg/gTg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597364	10597364	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014733-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1366	254	627	5	ENST00000171111.5:c.1839C>A	p.Cys613Ter	p.C613*	ENST00000171111	NM_203500.1	613	tgC/tgA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	97	449	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0011015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1253	40	646	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11264637	11264637	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	47	458	0	ENST00000361445.4:c.3925G>C	p.Ala1309Pro	p.A1309P	ENST00000361445	NM_004958.3	1309	Gcc/Ccc					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47690262	47690262	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	67	479	0	ENST00000233146.2:c.1479G>T	p.Gln493His	p.Q493H	ENST00000233146	NM_000251.2	493	caG/caT					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356269	66356269	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	65	499	0	ENST00000273854.3:c.1228G>T	p.Gly410Cys	p.G410C	ENST00000273854	NM_004439.5	410	Ggt/Tgt					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86681121	86681121	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011015-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	75	343	0	ENST00000274376.6:c.2762C>A	p.Ser921Tyr	p.S921Y	ENST00000274376	NM_002890.2	921	tCt/tAt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11199716	11199716	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	248	467	1	ENST00000361445.4:c.4873-1G>T		p.X1625_splice	ENST00000361445	NM_004958.3	1625						NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453132	140453132	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	211	439	0	ENST00000288602.6:c.1803A>T	p.Lys601Asn	p.K601N	ENST00000288602	NM_004333.4	601	aaA/aaT					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38285951	38285951	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	77	544	1	ENST00000425967.3:c.460G>T	p.Ala154Ser	p.A154S	ENST00000425967	NM_001174067.1	154	Gct/Tct					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341965	8341965	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	37	325	0	ENST00000356435.5:c.4675C>G	p.Arg1559Gly	p.R1559G	ENST00000356435		1559	Cgg/Ggg					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101891211	101891211	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			615	137	531	0	ENST00000374994.4:c.172G>T	p.Val58Phe	p.V58F	ENST00000374994	NM_004612.2	58	Gtc/Ttc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	261	489	1	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29509596	29509596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	201	606	1	ENST00000358273.4:c.801G>A	p.Trp267Ter	p.W267*	ENST00000358273	NM_001042492.2	267	tgG/tgA					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29576006	29576006	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	77	443	0	ENST00000358273.4:c.3979G>T	p.Glu1327Ter	p.E1327*	ENST00000358273	NM_001042492.2	1327	Gaa/Taa					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2220125	2220125	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	106	690	1	ENST00000398665.3:c.2710G>T	p.Val904Leu	p.V904L	ENST00000398665	NM_032482.2	904	Gtg/Ttg					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7117180	7117180	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	139	661	1	ENST00000302850.5:c.4036G>T	p.Gly1346Trp	p.G1346W	ENST00000302850	NM_000208.2	1346	Ggg/Tgg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15281491	15281492	+	missense_variant	Missense_Mutation	DNP	CC	CC	GA			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			565	64	501	0	ENST00000263388.2:c.4881_4882delinsTC	p.Asp1628His	p.D1628H	ENST00000263388	NM_000435.2	1627	cgGGac/cgTCac					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15350248	15350248	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	101	751	0	ENST00000263377.2:c.3531G>T	p.Lys1177Asn	p.K1177N	ENST00000263377	NM_058243.2	1177	aaG/aaT					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412182	63412182	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	132	1009	2	ENST00000330258.3:c.985G>T	p.Gly329Cys	p.G329C	ENST00000330258	NM_152424.3	329	Ggt/Tgt					NEWRECORD																																																																									
XIAP	0	MSKCC	GRCh37	X	123020336	123020337	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0013509-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	52	512	0	ENST00000355640.3:c.824_825delinsTT	p.Trp275Phe	p.W275F	ENST00000355640		275	tGG/tTT					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0014627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			598	70	355	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0014627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			958	63	587	0	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66218789	66218789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			678	40	527	0	ENST00000273854.3:c.2269G>A	p.Glu757Lys	p.E757K	ENST00000273854	NM_004439.5	757	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579313	7579313	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	114	449	1	ENST00000269305.4:c.374C>A	p.Thr125Lys	p.T125K	ENST00000269305	NM_001126112.2	125	aCg/aAg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118374648	118374648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	67	402	0	ENST00000534358.1:c.8041G>A	p.Asp2681Asn	p.D2681N	ENST00000534358	NM_005933.3	2681	Gac/Aac					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	459851	459851	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0014627-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1261	91	804	0	ENST00000399788.2:c.1244C>G	p.Ser415Ter	p.S415*	ENST00000399788	NM_001042603.1	415	tCa/tGa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151873659	151873659	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142287778		P-0012046-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	100	120	0	ENST00000262189.6:c.8879C>T	p.Pro2960Leu	p.P2960L	ENST00000262189	NM_170606.2	2960	cCg/cTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	103	338	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	66	597	4	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	140	365	0	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175216	112175216	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	74	229	0	ENST00000257430.4:c.3925G>T	p.Glu1309Ter	p.E1309*	ENST00000257430	NM_000038.5	1309	Gaa/Taa					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3786682	3786682	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	332	743	1	ENST00000262367.5:c.4529C>T	p.Ala1510Val	p.A1510V	ENST00000262367	NM_004380.2	1510	gCg/gTg					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148523554	148523554	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	24	350	1	ENST00000320356.2:c.899G>C	p.Cys300Ser	p.C300S	ENST00000320356	NM_004456.4	300	tGc/tCc					NEWRECORD																																																																									
EGFL7	0	MSKCC	GRCh37	9	139564113	139564113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	212	443	2	ENST00000308874.7:c.253C>T	p.Arg85Cys	p.R85C	ENST00000308874		85	Cgc/Tgc					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67479840	67479840	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	41	341	1	ENST00000327367.4:c.1147G>T	p.Glu383Ter	p.E383*	ENST00000327367	NM_005902.3	383	Gag/Tag					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45371840	45371840	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	18	326	0	ENST00000262160.6:c.1151T>A	p.Ile384Asn	p.I384N	ENST00000262160	NM_005901.5	384	aTc/aAc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339247	70339261	+	inframe_deletion	In_Frame_Del	DEL	AAACAAGGTTTCAAT	AAACAAGGTTTCAAT	-			P-0010330-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	71	345	0	ENST00000374080.3:c.126_140del	p.Lys42_Asn46del	p.K42_N46del	ENST00000374080		42	AAACAAGGTTTCAAT/-					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0012127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	217	306	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56189360	56189360	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0012127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	300	450	0	ENST00000399503.3:c.4392T>G	p.Ile1464Met	p.I1464M	ENST00000399503	NM_005921.1	1464	atT/atG					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11121099	11121099	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012127-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	346	619	0	ENST00000344626.4:c.2167del	p.Ala723ProfsTer51	p.A723Pfs*51	ENST00000344626	NM_003072.3	722	caG/ca					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	203	345	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	318	541	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678541	88678541	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145157285		P-0012718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	237	418	0	ENST00000360948.2:c.995C>T	p.Thr332Met	p.T332M	ENST00000360948	NM_001012338.2	332	aCg/aTg					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12870831	12870831	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			252	145	264	0	ENST00000228872.4:c.58C>T	p.Gln20Ter	p.Q20*	ENST00000228872	NM_004064.3	20	Cag/Tag					NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36809496	36809496	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012718-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			156	293	452	0	ENST00000373129.3:c.969C>A	p.Asp323Glu	p.D323E	ENST00000373129	NM_032017.1	323	gaC/gaA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			710	57	434	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0012357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	21	83	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
LMO1	0	MSKCC	GRCh37	11	8251991	8251991	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			876	86	552	0	ENST00000335790.3:c.86G>T	p.Arg29Leu	p.R29L	ENST00000335790	NM_002315.2	29	cGc/cTc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143171	30143171	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	32	305	1	ENST00000389048.3:c.355G>T	p.Glu119Ter	p.E119*	ENST00000389048	NM_004304.4	119	Gag/Tag					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45003802	45003802	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	72	342	0	ENST00000558401.1:c.58G>C	p.Ala20Pro	p.A20P	ENST00000558401	NM_004048.2	20	Gct/Cct					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7174720	7174720	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012357-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	59	375	0	ENST00000302850.5:c.997G>C	p.Gly333Arg	p.G333R	ENST00000302850	NM_000208.2	333	Ggt/Cgt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	103	601	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0012556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	25	555	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151947027	151947027	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	29	597	0	ENST00000262189.6:c.1747C>A	p.His583Asn	p.H583N	ENST00000262189	NM_170606.2	583	Cac/Aac					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992127	72992127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			575	62	1018	1	ENST00000268489.5:c.1918G>T	p.Val640Leu	p.V640L	ENST00000268489	NM_006885.3	640	Gtg/Ttg					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33793161	33793161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			309	19	507	0	ENST00000498907.2:c.160G>A	p.Gly54Ser	p.G54S	ENST00000498907	NM_004364.3	54	Ggc/Agc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921606	39921606	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012556-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	71	467	0	ENST00000378444.4:c.4214C>G	p.Ser1405Trp	p.S1405W	ENST00000378444	NM_001123385.1	1405	tCg/tGg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	71	314	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578257	7578257	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012662-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	13	448	0	ENST00000269305.4:c.592G>T	p.Glu198Ter	p.E198*	ENST00000269305	NM_001126112.2	198	Gaa/Taa					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37646813	37646813	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			841	119	432	0	ENST00000447079.4:c.1938del	p.Glu647LysfsTer8	p.E647Kfs*8	ENST00000447079	NM_015083.1	645	ccA/cc					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37650842	37650842	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0015070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			795	883	795	0	ENST00000447079.4:c.2314del	p.Ile772PhefsTer10	p.I772Ffs*10	ENST00000447079	NM_015083.1	772	Att/tt					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55958789	55958789	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	166	576	0	ENST00000263923.4:c.3064C>T	p.Arg1022Ter	p.R1022*	ENST00000263923	NM_002253.2	1022	Cga/Tga					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29910594	29910594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			850	151	570	0	ENST00000376809.5:c.134G>A	p.Arg45His	p.R45H	ENST00000376809	NM_002116.7	45	cGc/cAc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151864220	151864229	+	splice_donor_variant,intron_variant	Splice_Site	DEL	CTATTTATTA	CTATTTATTA	-			P-0015070-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			300	24	182	0	ENST00000262189.6:c.9750+2_9750+11del		p.X3250_splice	ENST00000262189	NM_170606.2	3250						NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760961	133760961	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	274	752	1	ENST00000318560.5:c.3284G>A	p.Arg1095Gln	p.R1095Q	ENST00000318560	NM_005157.4	1095	cGg/cAg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717733	89717733	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	118	371	0	ENST00000371953.3:c.758T>A	p.Ile253Asn	p.I253N	ENST00000371953	NM_000314.4	253	aTc/aAc					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150551426	150551426	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	209	819	0	ENST00000369026.2:c.581A>C	p.Lys194Thr	p.K194T	ENST00000369026	NM_021960.4	194	aAg/aCg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8436593	8436593	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0013036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	166	499	0	ENST00000356435.5:c.4085A>T	p.Glu1362Val	p.E1362V	ENST00000356435		1362	gAg/gTg					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94194100	94194100	+	splice_donor_variant	Splice_Site	SNP	A	A	G			P-0013036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	193	632	0	ENST00000323929.3:c.1326+2T>C		p.X442_splice	ENST00000323929	NM_005591.3	442						NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12871044	12871044	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013036-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			294	110	293	0	ENST00000228872.4:c.275delC	p.Pro92ArgfsTer27	p.P92Rfs*27	ENST00000228872	NM_004064.3	91	Ccc/cc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266107	41266107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	298	376	0	ENST00000349496.5:c.104T>G	p.Ile35Ser	p.I35S	ENST00000349496	NM_001904.3	35	aTc/aGc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685316	89685316	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0011174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			52	242	179	0	ENST00000371953.3:c.209+2T>C		p.X70_splice	ENST00000371953	NM_000314.4	70						NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29543637	29543637	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	315	444	0	ENST00000389048.3:c.1526C>T	p.Ala509Val	p.A509V	ENST00000389048	NM_004304.4	509	gCc/gTc					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58740713	58740717	+	frameshift_variant	Frame_Shift_Del	DEL	GAGTC	GAGTC	-			P-0011174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	515	654	0	ENST00000305921.3:c.1618_1622del	p.Glu540GlnfsTer10	p.E540Qfs*10	ENST00000305921	NM_003620.3	540	GAGTCc/c					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589622	67589624	+	inframe_deletion	In_Frame_Del	DEL	AAT	AAT	-			P-0011174-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	150	164	0	ENST00000274335.5:c.1386_1388del	p.Glu462_Tyr463delinsAsp	p.E462_Y463delinsD	ENST00000274335		462	gAATat/gat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1325	31	563	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			562	106	285	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42003303	42003303	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	212	1045	0	ENST00000219905.7:c.2840C>T	p.Ser947Leu	p.S947L	ENST00000219905	NM_001164273.1	947	tCa/tTa					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436093	110436094	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0013388-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	149	582	0	ENST00000375856.3:c.2307_2308del	p.Ser770ProfsTer103	p.S770Pfs*103	ENST00000375856	NM_003749.2	769	gtGTcc/gtcc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	67	557	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11298650	11298650	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			550	51	607	0	ENST00000361445.4:c.1811G>T	p.Arg604Leu	p.R604L	ENST00000361445	NM_004958.3	604	cGc/cTc					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544682	65544682	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	66	793	0	ENST00000358664.4:c.244C>T	p.Gln82Ter	p.Q82*	ENST00000358664	NM_002382.4	82	Cag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29490328	29490328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014297-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			472	74	460	0	ENST00000358273.4:c.413C>A	p.Ala138Asp	p.A138D	ENST00000358273	NM_001042492.2	138	gCc/gAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579591	7579591	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	223	464	0	ENST00000269305.4:c.97-1G>A		p.X33_splice	ENST00000269305	NM_001126112.2	33						NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8319952	8319952	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			353	204	443	0	ENST00000356435.5:c.5549G>A	p.Arg1850Lys	p.R1850K	ENST00000356435		1850	aGa/aAa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8460538	8460538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	278	545	2	ENST00000356435.5:c.3748G>T	p.Val1250Leu	p.V1250L	ENST00000356435		1250	Gtg/Ttg					NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139820133	139820133	+	splice_acceptor_variant	Splice_Site	SNP	A	A	C			P-0012743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	591	683	0	ENST00000247668.2:c.1288-2A>C		p.X430_splice	ENST00000247668	NM_021138.3	430						NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41203080	41203080	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012743-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	242	429	0	ENST00000357654.3:c.5332G>T	p.Asp1778Tyr	p.D1778Y	ENST00000357654	NM_007294.3	1778	Gat/Tat					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0013117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	555	645	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115745	8115745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1485	335	958	0	ENST00000346208.3:c.1091G>A	p.Arg364Lys	p.R364K	ENST00000346208		364	aGa/aAa					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180036016	180036016	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1349	401	1008	0	ENST00000261937.6:c.3845A>G	p.Glu1282Gly	p.E1282G	ENST00000261937	NM_182925.4	1282	gAg/gGg					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99472880	99472880	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1064	342	738	0	ENST00000268035.6:c.2876A>T	p.His959Leu	p.H959L	ENST00000268035	NM_000875.3	959	cAt/cTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	498	554	0	ENST00000269305.4:c.503A>T	p.His168Leu	p.H168L	ENST00000269305	NM_001126112.2	168	cAc/cTc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099388	27099498	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTGGGTATCAGCCCAGTATGAATACCTCTGACATGATGGGGCGCATGTCCTATGAGCCAAATAAGGATCCTTATGGCAGCATGAGGAAAGGTGACTGATCTGATTGCTAT	CCTGGGTATCAGCCCAGTATGAATACCTCTGACATGATGGGGCGCATGTCCTATGAGCCAAATAAGGATCCTTATGGCAGCATGAGGAAAGGTGACTGATCTGATTGCTAT	-			P-0013117-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1074	121	723	0	ENST00000324856.7:c.3625_3715+20del		p.X1209_splice	ENST00000324856	NM_006015.4	1209						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			267	175	435	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	119	290	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81372753	81372753	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	261	430	0	ENST00000222390.5:c.781C>T	p.Arg261Cys	p.R261C	ENST00000222390	NM_000601.4	261	Cgc/Tgc					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7267475	7267475	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012270-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	283	506	1	ENST00000302850.5:c.533A>G	p.Asp178Gly	p.D178G	ENST00000302850	NM_000208.2	178	gAc/gGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	56	417	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	53	519	0	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43615610	43615610	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	71	478	0	ENST00000355710.3:c.2689C>T	p.Arg897Ter	p.R897*	ENST00000355710	NM_020975.4	897	Cga/Tga					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610470	81610470	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012139-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			717	56	610	0	ENST00000298171.2:c.2068T>G	p.Phe690Val	p.F690V	ENST00000298171	NM_000369.2	690	Ttc/Gtc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	361	767	2	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42795609	42795609	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011093-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			701	334	910	1	ENST00000575354.2:c.2694del	p.Ala900ProfsTer24	p.A900Pfs*24	ENST00000575354	NM_015125.3	897	Ccc/cc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101205	27101211	+	frameshift_variant	Frame_Shift_Del	DEL	CCATGTG	CCATGTG	-			P-0013898-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	265	702	0	ENST00000324856.7:c.4487_4493del	p.Thr1496SerfsTer7	p.T1496Sfs*7	ENST00000324856	NM_006015.4	1496	aCCATGTGg/ag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	265	138	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29548948	29548948	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0013699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	34	65	0	ENST00000358273.4:c.1721+1G>C		p.X574_splice	ENST00000358273	NM_001042492.2	574						NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128750883	128750883	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013699-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1264	224	97	0	ENST00000377970.2:c.420C>G	p.Ile140Met	p.I140M	ENST00000377970	NM_002467.4	140	atC/atG					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			161	26	443	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	89	682	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15952272	15952272	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			389	26	524	0	ENST00000268712.3:c.6423C>G	p.His2141Gln	p.H2141Q	ENST00000268712	NM_006311.3	2141	caC/caG					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4123815	4123815	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014300-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	46	553	1	ENST00000262948.5:c.58G>A	p.Glu20Lys	p.E20K	ENST00000262948	NM_030662.3	20	Gag/Aag					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134920499	134920499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	61	653	0	ENST00000398015.3:c.2314G>A	p.Asp772Asn	p.D772N	ENST00000398015	NM_004441.4	772	Gac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578501	7578506	+	frameshift_variant	Frame_Shift_Del	DEL	CACAGG	CACAGG	T			P-0013886-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	79	477	0	ENST00000269305.4:c.424_429delinsA	p.Pro142ThrfsTer5	p.P142Tfs*5	ENST00000269305	NM_001126112.2	142	CCTGTG/A					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087533	27087533	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	125	639	0	ENST00000324856.7:c.2109del	p.Ala704ProfsTer38	p.A704Pfs*38	ENST00000324856	NM_006015.4	703	Ccc/cc					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226564978	226564978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	100	445	0	ENST00000366794.5:c.1772G>T	p.Arg591Leu	p.R591L	ENST00000366794	NM_001618.3	591	cGt/cTt					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	406221	406221	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	92	480	0	ENST00000399788.2:c.4220A>G	p.Lys1407Arg	p.K1407R	ENST00000399788	NM_001042603.1	1407	aAg/aGg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	136	415	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857103	9857103	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	124	527	0	ENST00000330684.3:c.4298C>A	p.Ala1433Glu	p.A1433E	ENST00000330684	NM_001134407.1	1433	gCa/gAa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89528572	89528572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	60	335	0	ENST00000336596.2:c.2872G>A	p.Val958Met	p.V958M	ENST00000336596	NM_005233.5	958	Gtg/Atg					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106180872	106180872	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	74	494	0	ENST00000380013.4:c.3900T>G	p.Phe1300Leu	p.F1300L	ENST00000380013	NM_001127208.2	1300	ttT/ttG					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56168530	56168530	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	74	299	0	ENST00000399503.3:c.1486A>G	p.Arg496Gly	p.R496G	ENST00000399503	NM_005921.1	496	Aga/Gga					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56177768	56177768	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013702-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	91	399	0	ENST00000399503.3:c.2741G>T	p.Gly914Val	p.G914V	ENST00000399503	NM_005921.1	914	gGa/gTa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49439880	49439881	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0012058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	320	519	1	ENST00000301067.7:c.4660_4661del	p.Val1554LeufsTer48	p.V1554Lfs*48	ENST00000301067	NM_003482.3	1554	GTc/c					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266112	41266112	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			628	337	430	0	ENST00000349496.5:c.109T>G	p.Ser37Ala	p.S37A	ENST00000349496	NM_001904.3	37	Tct/Gct					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099026	27099026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	587	371	0	ENST00000324856.7:c.3442C>T	p.Gln1148Ter	p.Q1148*	ENST00000324856	NM_006015.4	1148	Cag/Tag					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65323354	65323354	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	241	309	1	ENST00000342505.4:c.1443C>A	p.Cys481Ter	p.C481*	ENST00000342505	NM_002227.2	481	tgC/tgA					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128750683	128750683	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	356	465	0	ENST00000377970.2:c.220C>A	p.Pro74Thr	p.P74T	ENST00000377970	NM_002467.4	74	Ccg/Acg					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69465985	69465985	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	284	443	0	ENST00000227507.2:c.823G>T	p.Glu275Ter	p.E275*	ENST00000227507	NM_053056.2	275	Gaa/Taa					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39742733	39742733	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	364	474	0	ENST00000361337.2:c.1576G>T	p.Glu526Ter	p.E526*	ENST00000361337	NM_003286.2	526	Gag/Tag					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766286	66766286	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	159	283	0	ENST00000374690.3:c.1298C>A	p.Ser433Ter	p.S433*	ENST00000374690	NM_000044.3	433	tCa/tAa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717697	89717724	+	frameshift_variant	Frame_Shift_Del	DEL	TTGAGTTCCCTCAGCCGTTACCTGTGTG	TTGAGTTCCCTCAGCCGTTACCTGTGTG	-			P-0012058-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			273	413	327	0	ENST00000371953.3:c.723_750del	p.Phe241LeufsTer6	p.F241Lfs*6	ENST00000371953	NM_000314.4	241	tTTGAGTTCCCTCAGCCGTTACCTGTGTGt/tt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			325	83	839	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52715982	52715982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			926	107	737	6	ENST00000322088.6:c.547C>T	p.Arg183Trp	p.R183W	ENST00000322088	NM_014225.5	183	Cgg/Tgg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108204625	108204626	+	frameshift_variant	Frame_Shift_Del	DEL	TT	TT	-			P-0014857-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			177	39	448	0	ENST00000278616.4:c.7940_7941del	p.Ile2647ThrfsTer8	p.I2647Tfs*8	ENST00000278616	NM_000051.3	2647	aTT/a					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645210	67645210	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			858	344	750	1	ENST00000264010.4:c.475C>T	p.Pro159Ser	p.P159S	ENST00000264010	NM_006565.3	159	Cct/Tct					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21557825	21557825	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014963-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	400	819	0	ENST00000382592.4:c.2020del	p.Leu674TrpfsTer23	p.L674Wfs*23	ENST00000382592	NM_014572.2	674	Ctg/tg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441431	52441431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	63	821	1	ENST00000460680.1:c.421C>T	p.His141Tyr	p.H141Y	ENST00000460680	NM_004656.3	141	Cat/Tat					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27089482	27089482	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	33	606	1	ENST00000324856.7:c.2438C>A	p.Pro813Gln	p.P813Q	ENST00000324856	NM_006015.4	813	cCa/cAa					NEWRECORD																																																																									
BBC3	0	MSKCC	GRCh37	19	47724973	47724973	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	72	829	0	ENST00000449228.1:c.771del	p.Leu258SerfsTer32	p.L258Sfs*32	ENST00000449228	NM_001127240.2	257	ttT/tt					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098975	178098975	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	36	419	0	ENST00000397062.3:c.70T>A	p.Trp24Arg	p.W24R	ENST00000397062	NM_006164.4	24	Tgg/Agg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188215	10188215	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	64	702	0	ENST00000256474.2:c.358A>G	p.Arg120Gly	p.R120G	ENST00000256474	NM_000551.3	120	Aga/Gga					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47205343	47205343	+	splice_donor_variant	Splice_Site	SNP	C	C	G			P-0013967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	44	641	0	ENST00000409792.3:c.71+1G>C		p.X24_splice	ENST00000409792	NM_014159.6	24						NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117641083	117641083	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	31	829	0	ENST00000368508.3:c.5888C>G	p.Thr1963Arg	p.T1963R	ENST00000368508	NM_002944.2	1963	aCa/aGa					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48650270	48650270	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013967-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			199	47	338	0	ENST00000376670.3:c.240G>C	p.Leu80Phe	p.L80F	ENST00000376670	NM_002049.3	80	ttG/ttC					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266101	41266101	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913400		P-0014708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			552	21	571	0	ENST00000349496.5:c.98C>T	p.Ser33Phe	p.S33F	ENST00000349496	NM_001904.3	33	tCt/tTt					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			837	31	753	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692905	89692905	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	31	692	1	ENST00000371953.3:c.389G>T	p.Arg130Leu	p.R130L	ENST00000371953	NM_000314.4	130	cGa/cTa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717717	89717717	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014708-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	35	682	0	ENST00000371953.3:c.743del	p.Pro248LeufsTer8	p.P248Lfs*8	ENST00000371953	NM_000314.4	248	Cct/ct					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412233	139412233	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	238	477	0	ENST00000277541.6:c.1412T>C	p.Ile471Thr	p.I471T	ENST00000277541	NM_017617.3	471	aTt/aCt					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0010927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	505	760	0	ENST00000269571.5:c.2263_2264delTTinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157527973	157527973	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	76	214	0	ENST00000346085.5:c.5698A>G	p.Ser1900Gly	p.S1900G	ENST00000346085	NM_020732.3	1900	Agc/Ggc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574032	7574032	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	C			P-0010927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	197	592	0	ENST00000269305.4:c.995T>G	p.Ile332Ser	p.I332S	ENST00000269305	NM_001126112.2	332	aTc/aGc					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59858256	59858256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1009	252	570	0	ENST00000259008.2:c.1739C>T	p.Ser580Leu	p.S580L	ENST00000259008	NM_032043.2	580	tCa/tTa					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39729894	39729895	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0010927-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	114	597	1	ENST00000361337.2:c.1209_1210delinsTT	p.Glu403_Val404delinsAspPhe	p.E403_V404delinsDF	ENST00000361337	NM_003286.2	403	gaAGtc/gaTTtc					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67479795	67479795	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	781	672	1	ENST00000327367.4:c.1102C>T	p.Arg368Ter	p.R368*	ENST00000327367	NM_005902.3	368	Cga/Tga					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	601	531	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198269831	198269831	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	276	708	0	ENST00000335508.6:c.1508A>G	p.Lys503Arg	p.K503R	ENST00000335508	NM_012433.2	503	aAa/aGa					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77034406	77034406	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0013354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	121	411	2	ENST00000356341.3:c.1552-1G>C		p.X518_splice	ENST00000356341	NM_002576.4	518						NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37866090	37866090	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013354-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1038	61	700	0	ENST00000269571.5:c.599A>G	p.Lys200Arg	p.K200R	ENST00000269571		200	aAg/aGg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1080	238	455	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69633658	69633658	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			83	33	49	0	ENST00000334134.2:c.44G>T	p.Gly15Val	p.G15V	ENST00000334134	NM_005247.2	15	gGc/gTc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28578209	28578209	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1005	104	440	2	ENST00000241453.7:c.2962G>A	p.Ala988Thr	p.A988T	ENST00000241453	NM_004119.2	988	Gct/Act					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36988250	36988250	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1320	991	695	0	ENST00000354822.5:c.403A>T	p.Arg135Trp	p.R135W	ENST00000354822	NM_001079668.2	135	Agg/Tgg					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89391075	89391075	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1321	108	661	0	ENST00000336596.2:c.1141C>G	p.Arg381Gly	p.R381G	ENST00000336596	NM_005233.5	381	Cgc/Ggc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099815	157099815	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1454	203	650	0	ENST00000346085.5:c.752G>A	p.Cys251Tyr	p.C251Y	ENST00000346085	NM_020732.3	251	tGc/tAc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47038779	47038779	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014817-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1345	276	701	0	ENST00000329236.7:c.556delC	p.Arg186GlyfsTer3	p.R186Gfs*3	ENST00000329236	NM_001204466.1	185	ggC/gg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			292	202	483	2	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	347	568	0	ENST00000269305.4:c.745A>G	p.Arg249Gly	p.R249G	ENST00000269305	NM_001126112.2	249	Agg/Ggg					NEWRECORD																																																																									
UPF1	0	MSKCC	GRCh37	19	18972835	18972835	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014319-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			653	269	437	0	ENST00000262803.5:c.2474G>A	p.Ser825Asn	p.S825N	ENST00000262803	NM_002911.3	825	aGt/aAt					NEWRECORD																																																																									
TP53BP1	0	MSKCC	GRCh37	15	43700254	43700254	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014254-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	78	837	0	ENST00000382044.4:c.5633A>C	p.Lys1878Thr	p.K1878T	ENST00000382044	NM_001141980.1	1878	aAg/aCg					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18279962	18279962	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013681-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	156	587	0	ENST00000222254.8:c.2045C>G	p.Pro682Arg	p.P682R	ENST00000222254	NM_005027.3	682	cCc/cGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1458	45	713	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249385	153249385	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867384286		P-0010971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	87	532	2	ENST00000281708.4:c.1393C>T	p.Arg465Cys	p.R465C	ENST00000281708	NM_033632.3	465	Cgt/Tgt					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189582169	189582169	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1068	94	494	2	ENST00000264731.3:c.728G>A	p.Arg243Gln	p.R243Q	ENST00000264731	NM_003722.4	243	cGg/cAg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15989742	15989742	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012734-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	160	258	0	ENST00000268712.3:c.3031C>G	p.Pro1011Ala	p.P1011A	ENST00000268712	NM_006311.3	1011	Cca/Gca					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	145	412	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266137	41266137	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913409		P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	31	437	0	ENST00000349496.5:c.134C>T	p.Ser45Phe	p.S45F	ENST00000349496	NM_001904.3	45	tCt/tTt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	498	409	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9560935	9560935	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs145132727		P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	50	590	1	ENST00000353224.5:c.847C>T	p.Arg283Trp	p.R283W	ENST00000353224	NM_177990.2	283	Cgg/Tgg					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28610098	28610098	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			854	101	692	0	ENST00000241453.7:c.1392G>A	p.Trp464Ter	p.W464*	ENST00000241453	NM_004119.2	464	tgG/tgA					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992907	72992907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1230	66	955	0	ENST00000268489.5:c.1138C>T	p.Pro380Ser	p.P380S	ENST00000268489	NM_006885.3	380	Cca/Tca					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31383226	31383226	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	49	546	1	ENST00000328111.2:c.1138C>T	p.Arg380Ter	p.R380*	ENST00000328111	NM_006892.3	380	Cga/Tga					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44513339	44513339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	42	435	0	ENST00000291552.4:c.596C>T	p.Ser199Phe	p.S199F	ENST00000291552	NM_006758.2	199	tCc/tTc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101205	27101205	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	42	646	0	ENST00000324856.7:c.4487C>T	p.Thr1496Ile	p.T1496I	ENST00000324856	NM_006015.4	1496	aCc/aTc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16259685	16259685	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	48	516	0	ENST00000375759.3:c.6950G>A	p.Gly2317Glu	p.G2317E	ENST00000375759	NM_015001.2	2317	gGg/gAg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120468276	120468276	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	27	320	2	ENST00000256646.2:c.4163G>A	p.Ser1388Asn	p.S1388N	ENST00000256646	NM_024408.3	1388	aGc/aAc					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64132884	64132884	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	69	873	0	ENST00000334205.4:c.1018C>T	p.Pro340Ser	p.P340S	ENST00000334205	NM_003942.2	340	Cct/Tct					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108153564	108153564	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	21	388	0	ENST00000278616.4:c.3704C>T	p.Pro1235Leu	p.P1235L	ENST00000278616	NM_000051.3	1235	cCt/cTt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108224608	108224608	+	splice_donor_variant	Splice_Site	SNP	G	G	A	rs17174393		P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	28	380	0	ENST00000278616.4:c.8786+1G>A		p.X2929_splice	ENST00000278616	NM_000051.3	2929						NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	427510	427510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	43	610	0	ENST00000399788.2:c.2659G>A	p.Glu887Lys	p.E887K	ENST00000399788	NM_001042603.1	887	Gaa/Aaa					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57859650	57859650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1478	87	1028	0	ENST00000228682.2:c.704C>T	p.Thr235Ile	p.T235I	ENST00000228682	NM_005269.2	235	aCt/aTt					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38060937	38060937	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	23	398	0	ENST00000250448.2:c.1052C>T	p.Thr351Ile	p.T351I	ENST00000250448	NM_004496.3	351	aCt/aTt					NEWRECORD																																																																									
RAD51B	0	MSKCC	GRCh37	14	68353757	68353757	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	15	246	0	ENST00000487270.1:c.592G>A	p.Glu198Lys	p.E198K	ENST00000487270	NM_133509.3	198	Gaa/Aaa					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105241316	105241316	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	50	720	3	ENST00000349310.3:c.592G>A	p.Glu198Lys	p.E198K	ENST00000349310	NM_001014432.1	198	Gag/Aag					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	396373	396373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	55	727	0	ENST00000262320.3:c.653C>T	p.Pro218Leu	p.P218L	ENST00000262320	NM_003502.3	218	cCc/cTc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2134383	2134383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	96	675	0	ENST00000219476.3:c.4160C>T	p.Ser1387Phe	p.S1387F	ENST00000219476	NM_000548.3	1387	tCc/tTc					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14029575	14029575	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	13	148	0	ENST00000311895.7:c.1786G>A	p.Ala596Thr	p.A596T	ENST00000311895	NM_005236.2	596	Gcg/Acg					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81892759	81892759	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	52	694	0	ENST00000359376.3:c.470G>A	p.Arg157Lys	p.R157K	ENST00000359376	NM_002661.3	157	aGa/aAa					NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40441540	40441540	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	65	1022	1	ENST00000345506.4:c.111G>A	p.Trp37Ter	p.W37*	ENST00000345506	NM_003152.3	37	tgG/tgA					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40486033	40486033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1046	105	951	2	ENST00000264657.5:c.832C>T	p.Arg278Cys	p.R278C	ENST00000264657	NM_139276.2	278	Cgt/Tgt					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45867322	45867322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	25	321	0	ENST00000391945.4:c.871G>A	p.Gly291Arg	p.G291R	ENST00000391945	NM_000400.3	291	Ggg/Agg					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52714724	52714724	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	38	452	0	ENST00000322088.6:c.482C>T	p.Ala161Val	p.A161V	ENST00000322088	NM_014225.5	161	gCt/gTt					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25973028	25973028	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	46	565	0	ENST00000435504.4:c.1397C>T	p.Ser466Phe	p.S466F	ENST00000435504		466	tCc/tTc					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202150009	202150009	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	63	535	0	ENST00000358485.4:c.1450C>T	p.Leu484Phe	p.L484F	ENST00000358485	NM_001080125.1	484	Ctt/Ttt					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220437140	220437140	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1379	222	1006	0	ENST00000243786.2:c.44G>A	p.Gly15Asp	p.G15D	ENST00000243786	NM_002191.3	15	gGt/gAt					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31386279	31386279	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	80	617	0	ENST00000328111.2:c.1504G>A	p.Glu502Lys	p.E502K	ENST00000328111	NM_006892.3	502	Gag/Aag					NEWRECORD																																																																									
MYD88	0	MSKCC	GRCh37	3	38180238	38180238	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	52	686	0	ENST00000396334.3:c.86C>T	p.Ser29Phe	p.S29F	ENST00000396334	NM_002468.4	29	tCc/tTc					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128204692	128204692	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			917	60	869	0	ENST00000341105.2:c.749C>T	p.Pro250Leu	p.P250L	ENST00000341105	NM_032638.4	250	cCc/cTc					NEWRECORD																																																																									
EIF4E	0	MSKCC	GRCh37	4	99808322	99808322	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	17	360	0	ENST00000280892.6:c.367G>A	p.Glu123Lys	p.E123K	ENST00000280892	NM_001130678.1	123	Gaa/Aaa					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1268704	1268704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1282	93	558	0	ENST00000310581.5:c.2513C>T	p.Ser838Phe	p.S838F	ENST00000310581	NM_198253.2	838	tCc/tTc					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1279566	1279566	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	87	515	1	ENST00000310581.5:c.1970G>A	p.Arg657Lys	p.R657K	ENST00000310581	NM_198253.2	657	aGg/aAg					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30672338	30672338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1096	68	750	0	ENST00000376406.3:c.4622C>T	p.Thr1541Ile	p.T1541I	ENST00000376406	NM_014641.2	1541	aCc/aTc					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30673217	30673217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			739	56	644	0	ENST00000376406.3:c.3743C>T	p.Pro1248Leu	p.P1248L	ENST00000376406	NM_014641.2	1248	cCt/cTt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117704559	117704559	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			697	41	716	0	ENST00000368508.3:c.2417T>C	p.Leu806Pro	p.L806P	ENST00000368508	NM_002944.2	806	cTc/cCc					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6441965	6441965	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	43	381	0	ENST00000356142.4:c.524A>G	p.Glu175Gly	p.E175G	ENST00000356142	NM_018890.3	175	gAg/gGg					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128851543	128851543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	52	660	0	ENST00000249373.3:c.1868C>T	p.Thr623Ile	p.T623I	ENST00000249373	NM_005631.4	623	aCc/aTc					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148515025	148515025	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1399	101	819	0	ENST00000320356.2:c.1184G>A	p.Gly395Glu	p.G395E	ENST00000320356	NM_004456.4	395	gGa/gAa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152132784	152132784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	51	593	1	ENST00000262189.6:c.88G>A	p.Ala30Thr	p.A30T	ENST00000262189	NM_170606.2	30	Gca/Aca					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38314994	38314994	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	48	555	0	ENST00000425967.3:c.70T>A	p.Leu24Met	p.L24M	ENST00000425967	NM_001174067.1	24	Ttg/Atg					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741797	145741797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	67	579	0	ENST00000428558.2:c.706G>A	p.Gly236Ser	p.G236S	ENST00000428558	NM_004260.3	236	Ggc/Agc					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	98009794	98009794	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	22	461	0	ENST00000289081.3:c.170C>T	p.Ser57Phe	p.S57F	ENST00000289081	NM_000136.2	57	tCt/tTt					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110250061	110250061	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	36	363	1	ENST00000374672.4:c.614G>A	p.Arg205Gln	p.R205Q	ENST00000374672	NM_004235.4	205	cGg/cAg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70349969	70349969	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014148-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1101	83	783	0	ENST00000374080.3:c.3952C>T	p.Gln1318Ter	p.Q1318*	ENST00000374080		1318	Cag/Tag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	44	168	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125497676	125497676	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			491	49	285	0	ENST00000428830.2:c.240A>T	p.Gln80His	p.Q80H	ENST00000428830	NM_001114121.2	80	caA/caT					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123210205	123210211	+	frameshift_variant	Frame_Shift_Del	DEL	AGTAAAA	AGTAAAA	-			P-0010641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	130	258	0	ENST00000218089.9:c.2557_2563del	p.Ser853LeufsTer17	p.S853Lfs*17	ENST00000218089	NM_001042749.1	853	AGTAAAAtt/tt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188271	10188278	+	frameshift_variant	Frame_Shift_Del	DEL	ATCTCTCA	ATCTCTCA	-			P-0010641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	119	505	0	ENST00000256474.2:c.416_423del	p.Ser139CysfsTer2	p.S139Cfs*2	ENST00000256474	NM_000551.3	138	ccATCTCTCAat/ccat					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437444	52437454	+	frameshift_variant	Frame_Shift_Del	DEL	GGGGACTCAGC	GGGGACTCAGC	-			P-0010641-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	87	519	0	ENST00000460680.1:c.1707_1717del	p.Leu570GlyfsTer69	p.L570Gfs*69	ENST00000460680	NM_004656.3	569	gtGCTGAGTCCCCtg/gttg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	143	331	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	29	217	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	69	265	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120115	70120115	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	11	39	0	ENST00000245479.2:c.1121del	p.Pro374ArgfsTer9	p.P374Rfs*9	ENST00000245479	NM_000346.3	373	Ccc/cc					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78429758	78429758	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	58	333	0	ENST00000370768.2:c.1030C>T	p.Arg344Ter	p.R344*	ENST00000370768	NM_003902.3	344	Cga/Tga					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52637546	52637546	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1182	94	665	0	ENST00000394830.3:c.2770G>T	p.Glu924Ter	p.E924*	ENST00000394830	NM_018313.4	924	Gaa/Taa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2976744	2976744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	116	566	2	ENST00000396946.4:c.1268G>A	p.Arg423Gln	p.R423Q	ENST00000396946	NM_032415.4	423	cGg/cAg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15285131	15285131	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	29	258	0	ENST00000263388.2:c.4484G>T	p.Trp1495Leu	p.W1495L	ENST00000263388	NM_000435.2	1495	tGg/tTg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175117	112175394	+	frameshift_variant	Frame_Shift_Del	DEL	TCATTATCATCTTTGTCATCAGCTGAAGATGAAATAGGATGTAATCAGACGACACAGGAAGCAGATTCTGCTAATACCCTGCAAATAGCAGAAATAAAAGAAAAGATTGGAACTAGGTCAGCTGAAGATCCTGTGAGCGAAGTTCCAGCAGTGTCACAGCACCCTAGAACCAAATCCAGCAGACTGCAGGGTTCTAGTTTATCTTCAGAATCAGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGAC	TCATTATCATCTTTGTCATCAGCTGAAGATGAAATAGGATGTAATCAGACGACACAGGAAGCAGATTCTGCTAATACCCTGCAAATAGCAGAAATAAAAGAAAAGATTGGAACTAGGTCAGCTGAAGATCCTGTGAGCGAAGTTCCAGCAGTGTCACAGCACCCTAGAACCAAATCCAGCAGACTGCAGGGTTCTAGTTTATCTTCAGAATCAGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGAC	-			P-0010535-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	75	233	0	ENST00000257430.4:c.3826_4103del	p.Ser1276ThrfsTer6	p.S1276Tfs*6	ENST00000257430	NM_000038.5	1276	TCATTATCATCTTTGTCATCAGCTGAAGATGAAATAGGATGTAATCAGACGACACAGGAAGCAGATTCTGCTAATACCCTGCAAATAGCAGAAATAAAAGAAAAGATTGGAACTAGGTCAGCTGAAGATCCTGTGAGCGAAGTTCCAGCAGTGTCACAGCACCCTAGAACCAAATCCAGCAGACTGCAGGGTTCTAGTTTATCTTCAGAATCAGCCAGGCACAAAGCTGTTGAATTTTCTTCAGGAGCGAAATCTCCCTCCAAAAGTGGTGCTCAGACa/a					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249005	55249007	+	missense_variant	Missense_Mutation	ONP	GCG	GCG	TCC			P-0012404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			756	265	508	0	ENST00000275493.2:c.2303_2305delinsTCC	p.Ser768_Val769delinsIleLeu	p.S768_V769delinsIL	ENST00000275493	NM_005228.3	768	aGCGtg/aTCCtg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0012588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	352	576	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578526	7578526	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs587781991		P-0012588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	257	611	0	ENST00000269305.4:c.404G>T	p.Cys135Phe	p.C135F	ENST00000269305	NM_001126112.2	135	tGc/tTc					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5080375	5080375	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			360	85	324	0	ENST00000381652.3:c.2278C>G	p.Gln760Glu	p.Q760E	ENST00000381652	NM_004972.3	760	Caa/Gaa					NEWRECORD																																																																									
CDK6	0	MSKCC	GRCh37	7	92404021	92404021	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	137	584	1	ENST00000265734.4:c.358G>A	p.Glu120Lys	p.E120K	ENST00000265734	NM_001259.6	120	Gaa/Aaa					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77090379	77090379	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012588-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	528	828	0	ENST00000356341.3:c.346G>A	p.Glu116Lys	p.E116K	ENST00000356341	NM_002576.4	116	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	489	907	3	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc					NEWRECORD																																																																									
SDHC	0	MSKCC	GRCh37	1	161326496	161326496	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs144532303		P-0014201-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1153	652	1138	0	ENST00000367975.2:c.271T>G	p.Leu91Val	p.L91V	ENST00000367975	NM_003001.3	91	Tta/Gta					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	24	237	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112888189	112888189	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1202	26	622	1	ENST00000351677.2:c.205G>A	p.Glu69Lys	p.E69K	ENST00000351677	NM_002834.3	69	Gag/Aag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	207	301	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
MAPK1	0	MSKCC	GRCh37	22	22160227	22160227	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	263	586	0	ENST00000215832.6:c.404G>A	p.Arg135Lys	p.R135K	ENST00000215832	NM_002745.4	135	aGa/aAa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151875031	151875031	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	224	414	0	ENST00000262189.6:c.7507C>T	p.Gln2503Ter	p.Q2503*	ENST00000262189	NM_170606.2	2503	Cag/Tag					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56782202	56782202	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	407	944	1	ENST00000308159.5:c.43C>T	p.Gln15Ter	p.Q15*	ENST00000308159	NM_014669.4	15	Cag/Tag					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467924	50467924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	205	408	0	ENST00000331340.3:c.1159G>A	p.Glu387Lys	p.E387K	ENST00000331340	NM_006060.4	387	Gag/Aag					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65309866	65309866	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	270	604	0	ENST00000342505.4:c.2284G>A	p.Glu762Lys	p.E762K	ENST00000342505	NM_002227.2	762	Gag/Aag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41277973	41277973	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	268	641	0	ENST00000349496.5:c.1937C>G	p.Ser646Cys	p.S646C	ENST00000349496	NM_001904.3	646	tCt/tGt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151874952	151874952	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	244	577	0	ENST00000262189.6:c.7586C>G	p.Ser2529Ter	p.S2529*	ENST00000262189	NM_170606.2	2529	tCa/tGa					NEWRECORD																																																																									
EGFL7	0	MSKCC	GRCh37	9	139564620	139564620	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	294	602	0	ENST00000308874.7:c.410-1G>C		p.X137_splice	ENST00000308874		137						NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64137074	64137074	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	318	519	0	ENST00000334205.4:c.1585C>T	p.Arg529Cys	p.R529C	ENST00000334205	NM_003942.2	529	Cgc/Tgc					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	441070	441070	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1348	125	713	0	ENST00000399788.2:c.1688T>C	p.Val563Ala	p.V563A	ENST00000399788	NM_001042603.1	563	gTt/gCt					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133245516	133245516	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	197	509	0	ENST00000320574.5:c.1804G>C	p.Glu602Gln	p.E602Q	ENST00000320574	NM_006231.2	602	Gag/Cag					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48951163	48951163	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	207	471	0	ENST00000267163.4:c.1325G>A	p.Gly442Glu	p.G442E	ENST00000267163	NM_000321.2	442	gGa/gAa					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72822099	72822099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	422	912	0	ENST00000268489.5:c.10076C>T	p.Ser3359Phe	p.S3359F	ENST00000268489	NM_006885.3	3359	tCc/tTc					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4099256	4099256	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	359	705	0	ENST00000262948.5:c.862G>A	p.Glu288Lys	p.E288K	ENST00000262948	NM_030662.3	288	Gaa/Aaa					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4101229	4101229	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012883-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	348	702	0	ENST00000262948.5:c.578G>A	p.Arg193Gln	p.R193Q	ENST00000262948	NM_030662.3	193	cGa/cAa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs1057519996		P-0010651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	43	340	0	ENST00000269305.4:c.395A>G	p.Lys132Arg	p.K132R	ENST00000269305	NM_001126112.2	132	aAg/aGg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437786	52437828	+	frameshift_variant	Frame_Shift_Del	DEL	GGTCCTTCTGGGACTCTTTGAGCTTCTCAGCCAAGACGTTGAT	GGTCCTTCTGGGACTCTTTGAGCTTCTCAGCCAAGACGTTGAT	-			P-0010651-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1051	62	633	0	ENST00000460680.1:c.1333_1375del	p.Ile445SerfsTer112	p.I445Sfs*112	ENST00000460680	NM_004656.3	445	ATCAACGTCTTGGCTGAGAAGCTCAAAGAGTCCCAGAAGGACCtc/tc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0011541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	122	478	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578371	7578371	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0011541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			169	38	336	0	ENST00000269305.4:c.559G>C	p.Gly187Arg	p.G187R	ENST00000269305	NM_001126112.2	187	Ggt/Cgt					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2134978	2134978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	22	573	0	ENST00000219476.3:c.4520C>A	p.Ser1507Tyr	p.S1507Y	ENST00000219476	NM_000548.3	1507	tCc/tAc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42790947	42790947	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011541-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	33	591	0	ENST00000575354.2:c.92C>G	p.Ser31Cys	p.S31C	ENST00000575354	NM_015125.3	31	tCt/tGt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1621	120	504	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865275	57865275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			927	198	982	3	ENST00000228682.2:c.2752G>A	p.Ala918Thr	p.A918T	ENST00000228682	NM_005269.2	918	Gcc/Acc					NEWRECORD																																																																									
GREM1	0	MSKCC	GRCh37	15	33023142	33023142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	52	905	0	ENST00000300177.4:c.251C>A	p.Thr84Lys	p.T84K	ENST00000300177	NM_001191322.1	84	aCg/aAg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15964880	15964880	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	53	753	0	ENST00000268712.3:c.5716G>T	p.Asp1906Tyr	p.D1906Y	ENST00000268712	NM_006311.3	1906	Gat/Tat					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37089021	37089038	+	inframe_deletion	In_Frame_Del	DEL	GCTCTTTGACCTTGCCAT	GCTCTTTGACCTTGCCAT	-			P-0014120-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	31	396	0	ENST00000231790.2:c.1746_1763del	p.Phe583_Leu588del	p.F583_L588del	ENST00000231790	NM_000249.3	581	ccGCTCTTTGACCTTGCCATg/ccg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578236	7578236	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014531-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1357	56	580	0	ENST00000269305.4:c.613T>C	p.Tyr205His	p.Y205H	ENST00000269305	NM_001126112.2	205	Tat/Cat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	50	462	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			698	32	368	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30729962	30729962	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	30	315	2	ENST00000359013.4:c.1558C>T	p.Arg520Ter	p.R520*	ENST00000359013	NM_001024847.2	520	Cga/Tga					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102195761	102195761	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010716-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	66	664	0	ENST00000263464.3:c.522del	p.Thr175LeufsTer7	p.T175Lfs*7	ENST00000263464	NM_001165.4	174	cTt/ct					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509208	106509208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	333	578	1	ENST00000359195.3:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000359195	NM_002649.2	401	cCc/cTc					NEWRECORD																																																																									
CCND1	0	MSKCC	GRCh37	11	69457936	69457936	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			4317	749	596	0	ENST00000227507.2:c.336G>C	p.Lys112Asn	p.K112N	ENST00000227507	NM_053056.2	112	aaG/aaC					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59761286	59761286	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010822-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1161	370	660	1	ENST00000259008.2:c.3121A>T	p.Met1041Leu	p.M1041L	ENST00000259008	NM_032043.2	1041	Atg/Ttg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			155	87	128	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579389	7579389	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	404	352	0	ENST00000269305.4:c.298C>T	p.Gln100Ter	p.Q100*	ENST00000269305	NM_001126112.2	100	Cag/Tag					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32188836	32188836	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	106	367	0	ENST00000375023.3:c.718C>T	p.Pro240Ser	p.P240S	ENST00000375023	NM_004557.3	240	Cct/Tct					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106523592	106523592	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	179	268	0	ENST00000359195.3:c.2744C>T	p.Ser915Phe	p.S915F	ENST00000359195	NM_002649.2	915	tCc/tTc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117663611	117663611	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs202169003		P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	181	414	1	ENST00000368508.3:c.4621G>A	p.Glu1541Lys	p.E1541K	ENST00000368508	NM_002944.2	1541	Gaa/Aaa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151860308	151860308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	382	462	0	ENST00000262189.6:c.10354C>T	p.Pro3452Ser	p.P3452S	ENST00000262189	NM_170606.2	3452	Ccc/Tcc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306568	41306568	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	254	380	1	ENST00000373198.4:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000373198	NM_133170.3	364	cGa/cAa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55233024	55233024	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144943614		P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	241	297	0	ENST00000275493.2:c.1774G>A	p.Val592Ile	p.V592I	ENST00000275493	NM_005228.3	592	Gtc/Atc					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36937232	36937232	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			919	501	910	2	ENST00000361632.4:c.1087G>A	p.Glu363Lys	p.E363K	ENST00000361632		363	Gaa/Aaa					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156837999	156837999	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	257	389	0	ENST00000524377.1:c.532C>T	p.His178Tyr	p.H178Y	ENST00000524377	NM_002529.3	178	Cat/Tat					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162688867	162688867	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	335	399	0	ENST00000367921.3:c.14C>T	p.Pro5Leu	p.P5L	ENST00000367921	NM_006182.2	5	cCc/cTc					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25523010	25523010	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	370	500	1	ENST00000264709.3:c.175C>T	p.Pro59Ser	p.P59S	ENST00000264709	NM_175629.2	59	Ccg/Tcg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52668684	52668684	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	366	562	1	ENST00000394830.3:c.1235C>T	p.Pro412Leu	p.P412L	ENST00000394830	NM_018313.4	412	cCt/cTt					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70008467	70008467	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	3616	235	0	ENST00000352241.4:c.1057G>A	p.Asp353Asn	p.D353N	ENST00000352241	NM_198159.2	353	Gac/Aac					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356362	66356362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	252	297	0	ENST00000273854.3:c.1135C>T	p.Pro379Ser	p.P379S	ENST00000273854	NM_004439.5	379	Ccg/Tcg					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106156291	106156291	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	194	191	0	ENST00000380013.4:c.1192C>T	p.Pro398Ser	p.P398S	ENST00000380013	NM_001127208.2	398	Cca/Tca					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106197236	106197236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	152	192	0	ENST00000380013.4:c.5569C>T	p.Pro1857Ser	p.P1857S	ENST00000380013	NM_001127208.2	1857	Cct/Tct					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174307	112174307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	199	340	0	ENST00000257430.4:c.3016C>T	p.His1006Tyr	p.H1006Y	ENST00000257430	NM_000038.5	1006	Cat/Tat					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32165150	32165150	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	190	279	0	ENST00000375023.3:c.4978C>T	p.Pro1660Ser	p.P1660S	ENST00000375023	NM_004557.3	1660	Ccc/Tcc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169236	32169236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	105	226	1	ENST00000375023.3:c.3797G>A	p.Gly1266Glu	p.G1266E	ENST00000375023	NM_004557.3	1266	gGg/gAg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120510	94120510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1251	334	803	0	ENST00000369303.4:c.541G>A	p.Gly181Arg	p.G181R	ENST00000369303	NM_004440.3	181	Gga/Aga					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106547420	106547420	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	168	154	2	ENST00000369096.4:c.657G>T	p.Met219Ile	p.M219I	ENST00000369096	NM_001198.3	219	atG/atT					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117631272	117631272	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	193	559	0	ENST00000368508.3:c.6406G>A	p.Gly2136Arg	p.G2136R	ENST00000368508	NM_002944.2	2136	Gga/Aga					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148525838	148525838	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	109	250	0	ENST00000320356.2:c.619C>T	p.Arg207Ter	p.R207*	ENST00000320356	NM_004456.4	207	Cga/Tga					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100998208	100998208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	267	398	0	ENST00000325455.5:c.1594G>A	p.Glu532Lys	p.E532K	ENST00000325455	NM_001202474.3	532	Gag/Aag					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245204	46245204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	375	200	0	ENST00000334344.6:c.3298C>T	p.Gln1100Ter	p.Q1100*	ENST00000334344	NM_152641.2	1100	Cag/Tag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49436375	49436375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	606	478	0	ENST00000301067.7:c.5836G>A	p.Gly1946Ser	p.G1946S	ENST00000301067	NM_003482.3	1946	Ggc/Agc					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121432102	121432102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			193	477	397	0	ENST00000257555.6:c.849G>A	p.Met283Ile	p.M283I	ENST00000257555		283	atG/atA					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28913436	28913436	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	132	306	0	ENST00000282397.4:c.2357C>T	p.Ser786Phe	p.S786F	ENST00000282397	NM_002019.4	786	tCt/tTt					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95557440	95557440	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	224	277	0	ENST00000343455.3:c.5534T>A	p.Phe1845Tyr	p.F1845Y	ENST00000343455	NM_177438.2	1845	tTt/tAt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3777993	3777993	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	408	751	1	ENST00000262367.5:c.7055C>T	p.Pro2352Leu	p.P2352L	ENST00000262367	NM_004380.2	2352	cCa/cTa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858621	9858621	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	420	694	1	ENST00000330684.3:c.2780G>T	p.Arg927Ile	p.R927I	ENST00000330684	NM_001134407.1	927	aGa/aTa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10031858	10031858	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	237	307	0	ENST00000330684.3:c.965G>A	p.Gly322Glu	p.G322E	ENST00000330684	NM_001134407.1	322	gGg/gAg					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14029078	14029078	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	234	315	0	ENST00000311895.7:c.1289C>T	p.Ala430Val	p.A430V	ENST00000311895	NM_005236.2	430	gCc/gTc					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23632771	23632771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	260	454	0	ENST00000261584.4:c.3025C>T	p.Pro1009Ser	p.P1009S	ENST00000261584	NM_024675.3	1009	Cct/Tct					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81925159	81925159	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	369	587	0	ENST00000359376.3:c.950C>T	p.Pro317Leu	p.P317L	ENST00000359376	NM_002661.3	317	cCc/cTc					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81957089	81957089	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	357	670	0	ENST00000359376.3:c.2308-1G>A		p.X770_splice	ENST00000359376	NM_002661.3	770						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29586049	29586049	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	37	265	0	ENST00000358273.4:c.4333-1G>A		p.X1445_splice	ENST00000358273	NM_001042492.2	1445						NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40475041	40475041	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	464	681	0	ENST00000264657.5:c.1869G>A	p.Trp623Ter	p.W623*	ENST00000264657	NM_139276.2	623	tgG/tgA					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10247829	10247829	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			245	531	438	0	ENST00000340748.4:c.4373C>T	p.Thr1458Ile	p.T1458I	ENST00000340748		1458	aCc/aTc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15271891	15271891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	82	130	0	ENST00000263388.2:c.6548C>T	p.Pro2183Leu	p.P2183L	ENST00000263388	NM_000435.2	2183	cCc/cTc					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15349630	15349630	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	131	221	0	ENST00000263377.2:c.3944C>T	p.Ser1315Phe	p.S1315F	ENST00000263377	NM_058243.2	1315	tCc/tTc					NEWRECORD																																																																									
SRC	0	MSKCC	GRCh37	20	36031585	36031585	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			431	213	404	0	ENST00000358208.4:c.1414C>T	p.Arg472Cys	p.R472C	ENST00000358208		472	Cgc/Tgc					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39744939	39744939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	263	367	0	ENST00000361337.2:c.1729C>T	p.Leu577Phe	p.L577F	ENST00000361337	NM_003286.2	577	Ctt/Ttt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40827900	40827900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	369	496	1	ENST00000373198.4:c.2528C>T	p.Ser843Phe	p.S843F	ENST00000373198	NM_133170.3	843	tCt/tTt					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39755828	39755828	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	38	80	0	ENST00000288319.7:c.937C>T	p.Leu313Phe	p.L313F	ENST00000288319	NM_182918.3	313	Ctt/Ttt					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41546182	41546182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	41	57	0	ENST00000263253.7:c.2797C>T	p.Pro933Ser	p.P933S	ENST00000263253	NM_001429.3	933	Cct/Tct					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100613657	100613657	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	354	245	0	ENST00000308731.7:c.922G>A	p.Asp308Asn	p.D308N	ENST00000308731	NM_000061.2	308	Gac/Aac					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15818069	15818070	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	408	267	1	ENST00000307771.7:c.202_203del	p.Arg68AlafsTer5	p.R68Afs*5	ENST00000307771	NM_005089.3	66	AGa/a					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11319347	11319348	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	206	302	0	ENST00000361445.4:c.119_120delinsTT	p.Ala40Val	p.A40V	ENST00000361445	NM_004958.3	40	gCC/gTT					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209106722	209106723	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	125	293	0	ENST00000345146.2:c.845_846delinsTT	p.Ala282Val	p.A282V	ENST00000345146	NM_005896.2	282	gCC/gTT					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4099218	4099219	+	missense_variant	Missense_Mutation	DNP	GG	GG	AC			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	166	393	0	ENST00000262948.5:c.899_900delinsGT	p.Pro300Arg	p.P300R	ENST00000262948	NM_030662.3	300	cCC/cGT					NEWRECORD																																																																									
ICOSLG	0	MSKCC	GRCh37	21	45657056	45657057	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	135	274	0	ENST00000407780.3:c.99_100delinsAA	p.Glu34Lys	p.E34K	ENST00000407780	NM_001283052.1	33	gtGGag/gtAAag					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149505028	149505029	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010340-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	195	309	0	ENST00000261799.4:c.1786_1787delinsTT	p.Pro596Leu	p.P596L	ENST00000261799	NM_002609.3	596	CCg/TTg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0005150-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			479	128	495	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1803564	1803564	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0005150-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			414	1729	508	3	ENST00000260795.2:c.742C>T	p.Arg248Cys	p.R248C	ENST00000260795		248	Cgc/Tgc					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120314	70120314	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0005150-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1376	353	1222	0	ENST00000245479.2:c.1316A>T	p.Gln439Leu	p.Q439L	ENST00000245479	NM_000346.3	439	cAg/cTg					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1632046	1632046	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005150-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1135	143	1038	0	ENST00000344749.5:c.289G>A	p.Gly97Arg	p.G97R	ENST00000344749	NM_001136139.2	97	Gga/Aga					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17953951	17953951	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0005150-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			540	85	525	0	ENST00000458235.1:c.451C>A	p.Pro151Thr	p.P151T	ENST00000458235	NM_000215.3	151	Ccc/Acc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577022	7577022	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	166	520	2	ENST00000269305.4:c.916C>T	p.Arg306Ter	p.R306*	ENST00000269305	NM_001126112.2	306	Cga/Tga					NEWRECORD																																																																									
HIST2H3D	0	MSKCC	GRCh37	1	149785223	149785223	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			86	11	28	0	ENST00000331491.1:c.14A>G	p.Lys5Arg	p.K5R	ENST00000331491	NM_001123375.2	5	aAg/aGg					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48026431	48026431	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			988	94	563	0	ENST00000234420.5:c.1309C>T	p.His437Tyr	p.H437Y	ENST00000234420	NM_000179.2	437	Cac/Tac					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212426687	212426687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	130	623	0	ENST00000342788.4:c.2428G>A	p.Glu810Lys	p.E810K	ENST00000342788	NM_005235.2	810	Gag/Aag					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1282638	1282638	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1193	65	532	0	ENST00000310581.5:c.1675T>A	p.Ser559Thr	p.S559T	ENST00000310581	NM_198253.2	559	Tct/Act					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436797	110436797	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	63	427	0	ENST00000375856.3:c.1604G>T	p.Gly535Val	p.G535V	ENST00000375856	NM_003749.2	535	gGc/gTc					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618629	37618629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1296	148	439	0	ENST00000447079.4:c.305C>T	p.Ser102Leu	p.S102L	ENST00000447079	NM_015083.1	102	tCa/tTa					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618851	37618851	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1365	137	493	0	ENST00000447079.4:c.527C>T	p.Ser176Leu	p.S176L	ENST00000447079	NM_015083.1	176	tCa/tTa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5222776	5222776	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			365	31	244	0	ENST00000357368.4:c.3027A>T	p.Gln1009His	p.Q1009H	ENST00000357368	NM_002850.3	1009	caA/caT					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42796328	42796328	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			992	123	691	0	ENST00000575354.2:c.2977C>T	p.Pro993Ser	p.P993S	ENST00000575354	NM_015125.3	993	Cct/Tct					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42797808	42797808	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	70	479	0	ENST00000575354.2:c.3860G>A	p.Gly1287Glu	p.G1287E	ENST00000575354	NM_015125.3	1287	gGg/gAg					NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36164781	36164781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	55	509	0	ENST00000300305.3:c.1094G>A	p.Gly365Asp	p.G365D	ENST00000300305		365	gGc/gAc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937115	76937115	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012777-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	99	380	1	ENST00000373344.5:c.3633T>A	p.Asp1211Glu	p.D1211E	ENST00000373344	NM_000489.3	1211	gaT/gaA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1010	308	696	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243736308	243736308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014904-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			966	81	537	0	ENST00000263826.5:c.739C>T	p.Arg247Cys	p.R247C	ENST00000263826	NM_005465.4	247	Cgc/Tgc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010258-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	22	425	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	398	344	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	327	464	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039347	47039347	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	176	269	0	ENST00000329236.7:c.739G>A	p.Ala247Thr	p.A247T	ENST00000329236	NM_001204466.1	247	Gcg/Acg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8460427	8460427	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011435-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	177	279	0	ENST00000356435.5:c.3859A>G	p.Ile1287Val	p.I1287V	ENST00000356435		1287	Att/Gtt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0005436-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			171	517	565	0	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56434891	56434891	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005436-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			560	415	535	0	ENST00000407977.2:c.2246C>T	p.Ser749Phe	p.S749F	ENST00000407977		749	tCt/tTt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151842269	151842269	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0005436-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1112	136	595	0	ENST00000262189.6:c.14143A>G	p.Met4715Val	p.M4715V	ENST00000262189	NM_170606.2	4715	Atg/Gtg					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128204842	128204842	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1536	82	470	0	ENST00000341105.2:c.599G>T	p.Gly200Val	p.G200V	ENST00000341105	NM_032638.4	200	gGt/gTt					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131923346	131923346	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			465	97	168	0	ENST00000265335.6:c.849G>C	p.Glu283Asp	p.E283D	ENST00000265335		283	gaG/gaC					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93967899	93967899	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1396	246	624	0	ENST00000369303.4:c.2028G>C	p.Arg676Ser	p.R676S	ENST00000369303	NM_004440.3	676	agG/agC					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117861187	117861187	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0010784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1122	190	461	1	ENST00000297338.2:c.1702C>T	p.Gln568Ter	p.Q568*	ENST00000297338	NM_006265.2	568	Cag/Tag					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117861208	117861208	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1204	208	503	0	ENST00000297338.2:c.1681C>T	p.Gln561Ter	p.Q561*	ENST00000297338	NM_006265.2	561	Cag/Tag					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955514	48955514	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	114	374	1	ENST00000267163.4:c.1630A>T	p.Arg544Ter	p.R544*	ENST00000267163	NM_000321.2	544	Aga/Tga					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95562590	95562590	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	156	312	0	ENST00000343455.3:c.4667A>C	p.Asp1556Ala	p.D1556A	ENST00000343455	NM_177438.2	1556	gAc/gCc					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47679245	47679245	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	90	375	0	ENST00000347630.2:c.962C>T	p.Ala321Val	p.A321V	ENST00000347630	NM_001007230.1	321	gCa/gTa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			956	88	383	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602341	10602341	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1201	184	554	1	ENST00000171111.5:c.1237C>T	p.Arg413Cys	p.R413C	ENST00000171111	NM_203500.1	413	Cgt/Tgt					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851016	63851016	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1097	113	455	0	ENST00000279873.7:c.1797del	p.Thr600ProfsTer29	p.T600Pfs*29	ENST00000279873	NM_032199.2	598	ttC/tt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9934797	9934797	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			989	80	405	2	ENST00000330684.3:c.1493G>A	p.Gly498Asp	p.G498D	ENST00000330684	NM_001134407.1	498	gGt/gAt					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2210406	2210406	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			848	108	464	0	ENST00000398665.3:c.1013A>T	p.Gln338Leu	p.Q338L	ENST00000398665	NM_032482.2	338	cAg/cTg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11101842	11101842	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014736-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			993	156	483	0	ENST00000344626.4:c.1262T>A	p.Val421Glu	p.V421E	ENST00000344626	NM_003072.3	421	gTg/gAg					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45868194	45868194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009786-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			693	47	566	3	ENST00000391945.4:c.496C>T	p.Arg166Cys	p.R166C	ENST00000391945	NM_000400.3	166	Cgt/Tgt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49432041	49432041	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009786-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1045	109	952	1	ENST00000301067.7:c.9098C>T	p.Thr3033Ile	p.T3033I	ENST00000301067	NM_003482.3	3033	aCc/aTc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692935	89692935	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0013730-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	134	399	0	ENST00000371953.3:c.419T>A	p.Leu140Ter	p.L140*	ENST00000371953	NM_000314.4	140	tTa/tAa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0011389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	72	472	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55221822	55221822	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs149840192		P-0011389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	121	698	3	ENST00000275493.2:c.866C>T	p.Ala289Val	p.A289V	ENST00000275493	NM_005228.3	289	gCc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577084	7577084	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			651	189	532	0	ENST00000269305.4:c.854A>T	p.Glu285Val	p.E285V	ENST00000269305	NM_001126112.2	285	gAg/gTg					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248666	212248666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	91	449	0	ENST00000342788.4:c.3601G>A	p.Glu1201Lys	p.E1201K	ENST00000342788	NM_005235.2	1201	Gag/Aag					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70450876	70450876	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011389-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			386	42	242	0	ENST00000373644.4:c.5716G>A	p.Glu1906Lys	p.E1906K	ENST00000373644	NM_030625.2	1906	Gaa/Aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	241	765	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89877441	89877441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			898	233	632	0	ENST00000389301.3:c.322C>T	p.Pro108Ser	p.P108S	ENST00000389301	NM_000135.2	108	Ccc/Tcc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100914	27100914	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	69	584	0	ENST00000324856.7:c.4196A>G	p.Gln1399Arg	p.Q1399R	ENST00000324856	NM_006015.4	1399	cAg/cGg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434927	49434953	+	inframe_deletion	In_Frame_Del	DEL	GGCTGCGCAGGGGCCCCCGTAGGACTA	GGCTGCGCAGGGGCCCCCGTAGGACTA	-			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			702	137	704	0	ENST00000301067.7:c.6600_6626del	p.Ser2201_Pro2209del	p.S2201_P2209del	ENST00000301067	NM_003482.3	2200	ccTAGTCCTACGGGGGCCCCTGCGCAGCCc/ccc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88483906	88483906	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			812	211	672	1	ENST00000360948.2:c.1664C>T	p.Ala555Val	p.A555V	ENST00000360948	NM_001012338.2	555	gCc/gTc					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61717733	61717780	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTTAAATCCCATGAAAACTTTTAAGAAAAGGTAGAAATACTTACTTTG	GTTAAATCCCATGAAAACTTTTAAGAAAAGGTAGAAATACTTACTTTG	-			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	19	179	0	ENST00000401558.2:c.2019_2022+44del		p.X673_splice	ENST00000401558	NM_003400.3	673						NEWRECORD																																																																									
RUNX1	0	MSKCC	GRCh37	21	36206555	36206856	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGCTCCCAGGTGGTGCTGTTGGTTCGAGGCCTTTCTCTGAGCATCAAGGGGAAACCCCAGTTGGTCTGGGAAGGTGTGTGCACATGGGGGCCAGTTGTGGGTGGTGGCCCAGGTGCAGGAGAGGCGGGCAGTGGGCTCCATCTGGTACTTACCCTGCATCTGACTCTGAGGCTGAGGGTTAAAGGCAGTGGAGTGGTTCAGGGAGGCACGAGGGTTGGGCGTGGGGGCTGGGTGGTGTGGGCTGACCCTCATGGCTGTGCGCCGCAGCTGCTCCAGTTCACTGAGCCGCTCGGAAAAGGACA	AGCTCCCAGGTGGTGCTGTTGGTTCGAGGCCTTTCTCTGAGCATCAAGGGGAAACCCCAGTTGGTCTGGGAAGGTGTGTGCACATGGGGGCCAGTTGTGGGTGGTGGCCCAGGTGCAGGAGAGGCGGGCAGTGGGCTCCATCTGGTACTTACCCTGCATCTGACTCTGAGGCTGAGGGTTAAAGGCAGTGGAGTGGTTCAGGGAGGCACGAGGGTTGGGCGTGGGGGCTGGGTGGTGTGGGCTGACCCTCATGGCTGTGCGCCGCAGCTGCTCCAGTTCACTGAGCCGCTCGGAAAAGGACA	-			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	95	578	0	ENST00000300305.3:c.656_805+152del		p.X219_splice	ENST00000300305		219						NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89480491	89480491	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	63	218	0	ENST00000336596.2:c.2328A>T	p.Glu776Asp	p.E776D	ENST00000336596	NM_005233.5	776	gaA/gaT					NEWRECORD																																																																									
EGFL7	0	MSKCC	GRCh37	9	139564109	139564109	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	173	753	0	ENST00000308874.7:c.249G>C	p.Arg83Ser	p.R83S	ENST00000308874		83	agG/agC					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70340883	70340883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014580-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			713	160	566	1	ENST00000374080.3:c.616C>T	p.Arg206Trp	p.R206W	ENST00000374080		206	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	266	617	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5218502	5218502	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	254	704	0	ENST00000357368.4:c.3977A>T	p.Asn1326Ile	p.N1326I	ENST00000357368	NM_002850.3	1326	aAc/aTc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49438024	49438032	+	inframe_deletion	In_Frame_Del	DEL	GCAGCAGGC	GCAGCAGGC	-			P-0010946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	219	484	0	ENST00000301067.7:c.5139_5147del	p.Pro1714_Ala1716del	p.P1714_A1716del	ENST00000301067	NM_003482.3	1713	ggGCCTGCTGCa/gga					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26068344	26068364	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACTCACCTGATTTCTTTTAGT	ACTCACCTGATTTCTTTTAGT	-			P-0010946-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	48	395	0	ENST00000435504.4:c.126_140+6del		p.X42_splice	ENST00000435504		42						NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	325	663	2	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66937371	66937371	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			252	410	420	0	ENST00000374690.3:c.2225G>T	p.Trp742Leu	p.W742L	ENST00000374690	NM_000044.3	742	tGg/tTg					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25991668	25991668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			357	302	578	1	ENST00000435504.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000435504		192	Cag/Tag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151868369	151868369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014701-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			838	355	691	0	ENST00000262189.6:c.9433G>A	p.Gly3145Arg	p.G3145R	ENST00000262189	NM_170606.2	3145	Gga/Aga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176654	112176654	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201472075		P-0004297-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			114	10	489	0	ENST00000257430.4:c.5363G>A	p.Arg1788His	p.R1788H	ENST00000257430	NM_000038.5	1788	cGt/cAt					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42795275	42795276	+	missense_variant	Missense_Mutation	DNP	CC	CC	GT			P-0013933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	127	508	1	ENST00000575354.2:c.2355_2356delinsGT	p.Pro786Ser	p.P786S	ENST00000575354	NM_015125.3	785	gcCCct/gcGTct					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30035103	30035103	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	276	652	0	ENST00000338641.4:c.265G>T	p.Glu89Ter	p.E89*	ENST00000338641	NM_000268.3	89	Gaa/Taa					NEWRECORD																																																																									
IDH2	0	MSKCC	GRCh37	15	90631839	90631839	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1594	209	493	0	ENST00000330062.3:c.514A>T	p.Arg172Trp	p.R172W	ENST00000330062	NM_002168.2	172	Agg/Tgg					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99500637	99500637	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200539075		P-0010392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	84	213	0	ENST00000268035.6:c.4070G>A	p.Arg1357Gln	p.R1357Q	ENST00000268035	NM_000875.3	1357	cGg/cAg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151853008	151853008	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	99	219	0	ENST00000262189.6:c.11947C>T	p.Gln3983Ter	p.Q3983*	ENST00000262189	NM_170606.2	3983	Cag/Tag					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441236	52441239	+	frameshift_variant	Frame_Shift_Del	DEL	GCCT	GCCT	-			P-0010392-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	117	326	0	ENST00000460680.1:c.531_534del	p.Arg179SerfsTer7	p.R179Sfs*7	ENST00000460680	NM_004656.3	177	acAGGC/ac					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16265278	16265278	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012031-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	288	506	1	ENST00000375759.3:c.10770C>A	p.Ser3590Arg	p.S3590R	ENST00000375759	NM_015001.2	3590	agC/agA					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20488390	20488390	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	273	324	0	ENST00000346618.3:c.1046A>T	p.Tyr349Phe	p.Y349F	ENST00000346618	NM_001949.4	349	tAc/tTc					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52443747	52443776	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGGTGAAGAGGCCTGGGTGGGGCGACAAG	AGGGTGAAGAGGCCTGGGTGGGGCGACAAG	-			P-0010339-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			149	90	175	0	ENST00000460680.1:c.38-17_50del		p.X13_splice	ENST00000460680	NM_004656.3	13						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	191	639	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576897	7576897	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	230	815	0	ENST00000269305.4:c.949C>T	p.Gln317Ter	p.Q317*	ENST00000269305	NM_001126112.2	317	Cag/Tag					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24143268	24143268	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			637	121	816	0	ENST00000263121.7:c.500G>T	p.Cys167Phe	p.C167F	ENST00000263121	NM_003073.3	167	tGc/tTc					NEWRECORD																																																																									
TNFRSF14	0	MSKCC	GRCh37	1	2493203	2493203	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			726	120	792	0	ENST00000355716.4:c.643G>T	p.Val215Phe	p.V215F	ENST00000355716	NM_003820.2	215	Gtt/Ttt					NEWRECORD																																																																									
NUF2	0	MSKCC	GRCh37	1	163295923	163295923	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			991	182	776	2	ENST00000271452.3:c.82G>T	p.Gly28Cys	p.G28C	ENST00000271452	NM_145697.2	28	Ggt/Tgt					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17119708	17119708	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	152	562	2	ENST00000285071.4:c.1286A>T	p.His429Leu	p.H429L	ENST00000285071	NM_144997.5	429	cAc/cTc					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41244817	41244817	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			457	221	788	0	ENST00000357654.3:c.2731G>T	p.Gly911Ter	p.G911*	ENST00000357654	NM_007294.3	911	Gga/Tga					NEWRECORD																																																																									
HOXB13	0	MSKCC	GRCh37	17	46804349	46804349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			392	150	553	0	ENST00000290295.7:c.658C>A	p.Arg220Ser	p.R220S	ENST00000290295	NM_006361.5	220	Cgc/Agc					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25990587	25990587	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	98	643	0	ENST00000435504.4:c.640G>T	p.Glu214Ter	p.E214*	ENST00000435504		214	Gaa/Taa					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26101089	26101089	+	start_lost	Translation_Start_Site	SNP	C	C	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	207	516	0	ENST00000435504.4:c.3G>A	p.Met1?	p.M1?	ENST00000435504		1	atG/atA					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55129963	55129963	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			595	202	725	0	ENST00000257290.5:c.497G>C	p.Gly166Ala	p.G166A	ENST00000257290	NM_006206.4	166	gGg/gCg					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729265	41729265	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			467	128	473	0	ENST00000242208.4:c.1264G>T	p.Glu422Ter	p.E422*	ENST00000242208	NM_002192.2	422	Gag/Tag					NEWRECORD																																																																									
PREX2	0	MSKCC	GRCh37	8	68989633	68989633	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			432	257	543	0	ENST00000288368.4:c.1571G>C	p.Gly524Ala	p.G524A	ENST00000288368	NM_024870.2	524	gGa/gCa					NEWRECORD																																																																									
TEK	0	MSKCC	GRCh37	9	27183552	27183552	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			929	96	650	0	ENST00000380036.4:c.1126C>A	p.Pro376Thr	p.P376T	ENST00000380036	NM_000459.3	376	Ccg/Acg					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87635202	87635202	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	95	612	4	ENST00000277120.3:c.2254G>T	p.Val752Phe	p.V752F	ENST00000277120		752	Gtc/Ttc					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101894934	101894934	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015047-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	132	413	0	ENST00000374994.4:c.487G>T	p.Asp163Tyr	p.D163Y	ENST00000374994	NM_004612.2	163	Gac/Tac					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437747	52437771	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCCCGCTGCTAGTCTTGATGGA	CAGCCCCGCTGCTAGTCTTGATGGA	-			P-0010678-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	119	561	0	ENST00000460680.1:c.1390_1414del	p.Ser464GlyfsTer99	p.S464Gfs*99	ENST00000460680	NM_004656.3	464	TCCATCAAGACTAGCAGCGGGGCTGgg/gg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16259213	16259213	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	79	278	0	ENST00000375759.3:c.6478C>T	p.Pro2160Ser	p.P2160S	ENST00000375759	NM_015001.2	2160	Cca/Tca					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187524401	187524401	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0011018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	62	343	0	ENST00000441802.2:c.11279C>G	p.Ser3760Ter	p.S3760*	ENST00000441802	NM_005245.3	3760	tCa/tGa					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68845724	68845724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			814	107	440	1	ENST00000261769.5:c.970G>A	p.Gly324Arg	p.G324R	ENST00000261769	NM_004360.3	324	Gga/Aga					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11187681	11187681	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1022	82	850	2	ENST00000361445.4:c.6216G>C	p.Gln2072His	p.Q2072H	ENST00000361445	NM_004958.3	2072	caG/caC					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89462414	89462414	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	253	479	2	ENST00000336596.2:c.1886C>A	p.Ala629Glu	p.A629E	ENST00000336596	NM_005233.5	629	gCa/gAa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55573419	55573419	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	133	569	0	ENST00000288135.5:c.1081G>T	p.Asp361Tyr	p.D361Y	ENST00000288135	NM_000222.2	361	Gat/Tat					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67575554	67575554	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	58	558	0	ENST00000274335.5:c.627A>T	p.Leu209Phe	p.L209F	ENST00000274335		209	ttA/ttT					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88472567	88472567	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	301	776	0	ENST00000360948.2:c.1988T>A	p.Ile663Asn	p.I663N	ENST00000360948	NM_001012338.2	663	aTc/aAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40979319	40979319	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	187	683	0	ENST00000373198.4:c.1814C>A	p.Thr605Lys	p.T605K	ENST00000373198	NM_133170.3	605	aCg/aAg					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116411882	116411902	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	TTTCTTTCTCTCTGTTTTAAG	TTTCTTTCTCTCTGTTTTAAG	-			P-0011395-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	357	322	0	ENST00000397752.3:c.2888-21_2888-1del		p.X963_splice	ENST00000397752	NM_000245.2	963						NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12037511	12037511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	123	311	0	ENST00000396373.4:c.1142G>A	p.Gly381Glu	p.G381E	ENST00000396373	NM_001987.4	381	gGa/gAa					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	289	552	0	ENST00000281708.4:c.1513C>G	p.Arg505Gly	p.R505G	ENST00000281708	NM_033632.3	505	Cgc/Ggc					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206648274	206648274	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	282	670	0	ENST00000367120.3:c.295G>C	p.Glu99Gln	p.E99Q	ENST00000367120	NM_014002.3	99	Gag/Cag					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70332609	70332609	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			617	222	490	0	ENST00000373644.4:c.514C>G	p.Leu172Val	p.L172V	ENST00000373644	NM_030625.2	172	Cta/Gta					NEWRECORD																																																																									
BMPR1A	0	MSKCC	GRCh37	10	88679170	88679170	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	79	170	0	ENST00000372037.3:c.1110C>G	p.Ile370Met	p.I370M	ENST00000372037	NM_004329.2	370	atC/atG					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49422915	49422915	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	181	490	0	ENST00000301067.7:c.14180C>G	p.Ser4727Ter	p.S4727*	ENST00000301067	NM_003482.3	4727	tCa/tGa					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17122472	17122472	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			884	302	731	0	ENST00000285071.4:c.923A>G	p.Glu308Gly	p.E308G	ENST00000285071	NM_144997.5	308	gAg/gGg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11096874	11096874	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			680	268	570	1	ENST00000344626.4:c.365C>T	p.Ser122Leu	p.S122L	ENST00000344626	NM_003072.3	122	tCg/tTg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11097249	11097249	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	92	253	0	ENST00000344626.4:c.740C>T	p.Pro247Leu	p.P247L	ENST00000344626	NM_003072.3	247	cCa/cTa					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47639685	47639685	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	175	372	0	ENST00000233146.2:c.778G>C	p.Glu260Gln	p.E260Q	ENST00000233146	NM_000251.2	260	Gaa/Caa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163718	47163718	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	439	538	0	ENST00000409792.3:c.2408C>G	p.Ser803Cys	p.S803C	ENST00000409792	NM_014159.6	803	tCt/tGt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187541078	187541078	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	43	447	0	ENST00000441802.2:c.6662G>C	p.Gly2221Ala	p.G2221A	ENST00000441802	NM_005245.3	2221	gGa/gCa					NEWRECORD																																																																									
NPM1	0	MSKCC	GRCh37	5	170818372	170818372	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			399	53	299	1	ENST00000296930.5:c.202G>A	p.Glu68Lys	p.E68K	ENST00000296930	NM_002520.6	68	Gaa/Aaa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241626	55241626	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			558	205	465	0	ENST00000275493.2:c.2074C>G	p.Leu692Val	p.L692V	ENST00000275493	NM_005228.3	692	Ctt/Gtt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241688	55241688	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	223	540	0	ENST00000275493.2:c.2136C>G	p.Phe712Leu	p.F712L	ENST00000275493	NM_005228.3	712	ttC/ttG					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48923137	48923137	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	307	534	1	ENST00000267163.4:c.585G>A	p.Trp195Ter	p.W195*	ENST00000267163	NM_000321.2	195	tgG/tgA					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266097	41266097	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	534	821	0	ENST00000349496.5:c.94G>T	p.Asp32Tyr	p.D32Y	ENST00000349496	NM_001904.3	32	Gac/Tac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			215	1267	1013	2	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	175957495	175957495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1350	79	872	0	ENST00000367669.3:c.1901G>A	p.Arg634His	p.R634H	ENST00000367669	NM_022457.5	634	cGt/cAt					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69633665	69633665	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			84	19	86	0	ENST00000334134.2:c.37G>C	p.Glu13Gln	p.E13Q	ENST00000334134	NM_005247.2	13	Gag/Cag					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66937379	66937379	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014076-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	104	576	0	ENST00000374690.3:c.2233C>A	p.Leu745Ile	p.L745I	ENST00000374690	NM_000044.3	745	Ctc/Atc					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227662364	227662364	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010978-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	209	416	0	ENST00000305123.5:c.1091G>A	p.Arg364Gln	p.R364Q	ENST00000305123	NM_005544.2	364	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	561	495	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0012653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	293	356	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	518	469	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41076870	41076870	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012653-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	441	571	0	ENST00000373198.4:c.1550C>T	p.Thr517Met	p.T517M	ENST00000373198	NM_133170.3	517	aCg/aTg					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781515	135781516	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	G			P-0010692-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	1070	888	0	ENST00000298552.3:c.1449_1450delinsC	p.Arg484GlufsTer48	p.R484Efs*48	ENST00000298552	NM_001162426.1	483	tcTAga/tcCga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	76	248	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577085	7577085	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs112431538		P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	215	736	1	ENST00000269305.4:c.853G>A	p.Glu285Lys	p.E285K	ENST00000269305	NM_001126112.2	285	Gag/Aag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	64	211	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67650748	67650748	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			146	244	734	0	ENST00000264010.4:c.1053C>G	p.Phe351Leu	p.F351L	ENST00000264010	NM_006565.3	351	ttC/ttG					NEWRECORD																																																																									
NUP93	9688	MSKCC	GRCh37	16	56782199	56782199	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs528073782		P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			152	284	862	1	ENST00000308159.5:c.40G>A	p.Glu14Lys	p.E14K	ENST00000308159	NM_014669.4	14	Gaa/Aaa					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061191	38061191	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			185	95	312	0	ENST00000250448.2:c.798C>G	p.Phe266Leu	p.F266L	ENST00000250448	NM_004496.3	266	ttC/ttG					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21549134	21549134	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			132	209	873	1	ENST00000382592.4:c.3142G>A	p.Asp1048Asn	p.D1048N	ENST00000382592	NM_014572.2	1048	Gac/Aac					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772269	68772290	+	frameshift_variant	Frame_Shift_Del	DEL	ACGGTGCCCCGGCGCCACCTGG	ACGGTGCCCCGGCGCCACCTGG	-			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	176	704	0	ENST00000261769.5:c.119_140del	p.Thr40ArgfsTer9	p.T40Rfs*9	ENST00000261769	NM_004360.3	40	ACGGTGCCCCGGCGCCACCTGGag/ag					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7216899	7216899	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			173	251	987	1	ENST00000380728.2:c.622C>T	p.Gln208Ter	p.Q208*	ENST00000380728		208	Cag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29528086	29528086	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			48	88	343	0	ENST00000358273.4:c.1094C>G	p.Ser365Ter	p.S365*	ENST00000358273	NM_001042492.2	365	tCa/tGa					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44524466	44524466	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	170	452	0	ENST00000291552.4:c.91G>C	p.Asp31His	p.D31H	ENST00000291552	NM_006758.2	31	Gac/Cac					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153259011	153259011	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	191	639	0	ENST00000281708.4:c.804G>C	p.Met268Ile	p.M268I	ENST00000281708	NM_033632.3	268	atG/atC					NEWRECORD																																																																									
HIST1H3C	0	MSKCC	GRCh37	6	26046026	26046026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	278	1230	0	ENST00000540144.1:c.388C>T	p.Arg130Cys	p.R130C	ENST00000540144	NM_003531.2	130	Cgc/Tgc					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38285903	38285903	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3639	235	864	1	ENST00000425967.3:c.508G>T	p.Glu170Ter	p.E170*	ENST00000425967	NM_001174067.1	170	Gag/Tag					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90993741	90993742	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	84	290	0	ENST00000265433.3:c.181_182del	p.Asp61Ter	p.D61*	ENST00000265433	NM_002485.4	61	GAt/t					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5081808	5081808	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	204	534	0	ENST00000381652.3:c.2518G>C	p.Asp840His	p.D840H	ENST00000381652	NM_004972.3	840	Gat/Cat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25378561	25378561	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519725		P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	16	391	2	ENST00000256078.4:c.437C>T	p.Ala146Val	p.A146V	ENST00000256078	NM_033360.2	146	gCa/gTa					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881000	37881000	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	2601	583	0	ENST00000269571.5:c.2329G>T	p.Val777Leu	p.V777L	ENST00000269571		777	Gtg/Ttg					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27778095	27778095	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1979	120	1188	0	ENST00000369163.2:c.244G>C	p.Asp82His	p.D82H	ENST00000369163	NM_003536.2	82	Gac/Cac					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729811	41729811	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	75	635	0	ENST00000242208.4:c.718G>A	p.Val240Ile	p.V240I	ENST00000242208	NM_002192.2	240	Gtt/Att					NEWRECORD																																																																									
CD276	0	MSKCC	GRCh37	15	73991994	73991994	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs139808700		P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	84	582	0	ENST00000318443.5:c.14G>A	p.Arg5Gln	p.R5Q	ENST00000318443	NM_001024736.1	5	cGg/cAg					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99451967	99451967	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1039	64	516	0	ENST00000268035.6:c.1301G>A	p.Trp434Ter	p.W434*	ENST00000268035	NM_000875.3	434	tGg/tAg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16022778	16022790	+	protein_altering_variant	In_Frame_Del	DEL	GTCTCCACAGGCT	GTCTCCACAGGCT	CGGA			P-0011184-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	130	430	0	ENST00000268712.3:c.1862_1874delinsTCCG	p.Glu621_Thr625delinsValArg	p.E621_T625delinsVR	ENST00000268712	NM_006311.3	621	gAGCCTGTGGAGACc/gTCCGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	28	509	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0011265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	42	441	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38950410	38950410	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	26	478	0	ENST00000357387.3:c.3540A>C	p.Glu1180Asp	p.E1180D	ENST00000357387	NM_152756.3	1180	gaA/gaC					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971115	21971116	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0011265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	22	191	0	ENST00000304494.5:c.242_243del	p.Pro81ArgfsTer38	p.P81Rfs*38	ENST00000304494	NM_000077.4	81	cCC/c					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971115	21971116	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0011265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	22	191	0	ENST00000304494.5:c.242_243del	p.Pro81ArgfsTer38	p.P81Rfs*38	ENST00000304494	NM_000077.4	81	cCC/c					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971115	21971116	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0011265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	22	191	0	ENST00000304494.5:c.242_243del	p.Pro81ArgfsTer38	p.P81Rfs*38	ENST00000304494	NM_000077.4	81	cCC/c					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604763	48604763	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011265-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	36	579	0	ENST00000342988.3:c.1586del	p.Leu529TyrfsTer8	p.L529Yfs*8	ENST00000342988	NM_005359.5	529	Tta/ta					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9775987	9775987	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	312	313	1	ENST00000377346.4:c.451G>T	p.Ala151Ser	p.A151S	ENST00000377346	NM_005026.3	151	Gcc/Tcc					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241665742	241665742	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	332	459	0	ENST00000366560.3:c.1236+1G>T		p.X412_splice	ENST00000366560	NM_000143.3	412						NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66535399	66535399	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	446	206	0	ENST00000273854.3:c.62C>A	p.Thr21Asn	p.T21N	ENST00000273854	NM_004439.5	21	aCc/aAc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528273	157528273	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	415	424	0	ENST00000346085.5:c.5998G>C	p.Asp2000His	p.D2000H	ENST00000346085	NM_020732.3	2000	Gat/Cat					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108235809	108235809	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	533	342	0	ENST00000278616.4:c.8851G>A	p.Val2951Ile	p.V2951I	ENST00000278616	NM_000051.3	2951	Gtc/Atc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42794422	42794422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	1431	665	1	ENST00000575354.2:c.1502C>A	p.Ser501Tyr	p.S501Y	ENST00000575354	NM_015125.3	501	tCc/tAc					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42794967	42794967	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			329	617	310	0	ENST00000575354.2:c.2047C>G	p.Pro683Ala	p.P683A	ENST00000575354	NM_015125.3	683	Cct/Gct					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76972664	76972664	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	850	594	1	ENST00000373344.5:c.77C>T	p.Ser26Leu	p.S26L	ENST00000373344	NM_000489.3	26	tCa/tTa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47034475	47034476	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0012055-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			683	502	512	2	ENST00000329236.7:c.329_330delinsAA	p.Trp110Ter	p.W110*	ENST00000329236	NM_001204466.1	110	tGG/tAA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	343	444	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	274	234	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696599	47696599	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	513	667	0	ENST00000347630.2:c.349A>G	p.Met117Val	p.M117V	ENST00000347630	NM_001007230.1	117	Atg/Gtg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412308	139412308	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	226	640	0	ENST00000277541.6:c.1337del	p.Gly446AlafsTer185	p.G446Afs*185	ENST00000277541	NM_017617.3	446	gGc/gc					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38274936	38274936	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0013107-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	209	586	0	ENST00000425967.3:c.1646-2A>C		p.X549_splice	ENST00000425967	NM_001174067.1	549						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	123	550	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71021728	71021728	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	116	653	0	ENST00000318789.4:c.1630C>T	p.Arg544Ter	p.R544*	ENST00000318789	NM_032682.5	544	Cga/Tga					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12032466	12032466	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	105	355	0	ENST00000353533.5:c.902C>A	p.Ala301Asp	p.A301D	ENST00000353533	NM_003010.3	301	gCc/gAc					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162746102	162746102	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	77	483	0	ENST00000367921.3:c.2225G>A	p.Arg742Gln	p.R742Q	ENST00000367921	NM_006182.2	742	cGg/cAg					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162622165	162622165	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	49	441	0	ENST00000366898.1:c.532C>T	p.Gln178Ter	p.Q178*	ENST00000366898	NM_004562.2	178	Cag/Tag					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508595	106508595	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	42	345	0	ENST00000359195.3:c.589G>T	p.Ala197Ser	p.A197S	ENST00000359195	NM_002649.2	197	Gcc/Tcc					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116399545	116399545	+	splice_donor_variant	Splice_Site	SNP	G	G	C			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	102	626	0	ENST00000397752.3:c.2364+1G>C		p.X788_splice	ENST00000397752	NM_000245.2	788						NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43598017	43598017	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	90	515	1	ENST00000355710.3:c.565C>T	p.Arg189Cys	p.R189C	ENST00000355710	NM_020975.4	189	Cgc/Tgc					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119170373	119170373	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			744	49	567	0	ENST00000264033.4:c.2603G>A	p.Gly868Glu	p.G868E	ENST00000264033	NM_005188.3	868	gGg/gAg					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67457330	67457330	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	130	652	2	ENST00000327367.4:c.304G>T	p.Glu102Ter	p.E102*	ENST00000327367	NM_005902.3	102	Gag/Tag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10032174	10032174	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	49	587	0	ENST00000330684.3:c.649G>A	p.Val217Ile	p.V217I	ENST00000330684	NM_001134407.1	217	Gtc/Atc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937287	76937287	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	74	266	0	ENST00000373344.5:c.3461C>T	p.Ser1154Leu	p.S1154L	ENST00000373344	NM_000489.3	1154	tCa/tTa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099945	27099954	+	frameshift_variant	Frame_Shift_Del	DEL	CACGACAGCA	CACGACAGCA	-			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	60	615	0	ENST00000324856.7:c.3825_3834del	p.Arg1276IlefsTer10	p.R1276Ifs*10	ENST00000324856	NM_006015.4	1275	cCACGACAGCAc/cc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175467	112175467	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	155	469	0	ENST00000257430.4:c.4176del	p.Asp1394IlefsTer21	p.D1394Ifs*21	ENST00000257430	NM_000038.5	1392	tcA/tc					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	251	372	1	ENST00000335508.6:c.1873C>T	p.Arg625Cys	p.R625C	ENST00000335508	NM_012433.2	625	Cgt/Tgt					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	128	316	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104309858	104309858	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011105-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	220	284	0	ENST00000369902.3:c.449A>T	p.Gln150Leu	p.Q150L	ENST00000369902	NM_016169.3	150	cAg/cTg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013916-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	23	503	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241707	55241707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	52	629	0	ENST00000275493.2:c.2155G>A	p.Gly719Ser	p.G719S	ENST00000275493	NM_005228.3	719	Ggc/Agc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241678	55241678	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014885-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	59	734	0	ENST00000275493.2:c.2126A>C	p.Glu709Ala	p.E709A	ENST00000275493	NM_005228.3	709	gAa/gCa					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52702581	52702581	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	76	412	0	ENST00000394830.3:c.317A>G	p.Tyr106Cys	p.Y106C	ENST00000394830	NM_018313.4	106	tAt/tGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578471	7578478	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCGGGG	GGGCGGGG	-			P-0011246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	131	530	2	ENST00000269305.4:c.452_459delCCCCGCCC	p.Pro151ArgfsTer27	p.P151Rfs*27	ENST00000269305	NM_001126112.2	151	cCCCCGCCC/c					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46277761	46277770	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCGACAGG	AGCCGACAGG	CGC			P-0011246-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	139	612	0	ENST00000371998.3:c.3559_3568delinsCGC	p.Ser1187ArgfsTer5	p.S1187Rfs*5	ENST00000371998		1187	AGCCGACAGGca/CGCca					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89685269	89685269	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	15	166	0	ENST00000371953.3:c.165-1G>A		p.X55_splice	ENST00000371953	NM_000314.4	55						NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56478902	56478902	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1106	64	802	0	ENST00000267101.3:c.358A>G	p.Met120Val	p.M120V	ENST00000267101	NM_001982.3	120	Atg/Gtg					NEWRECORD																																																																									
NFKBIA	0	MSKCC	GRCh37	14	35872466	35872466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012242-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1165	62	850	0	ENST00000216797.5:c.437C>T	p.Thr146Ile	p.T146I	ENST00000216797	NM_020529.2	146	aCc/aTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577508	7577508	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	89	400	0	ENST00000269305.4:c.773A>G	p.Glu258Gly	p.E258G	ENST00000269305	NM_001126112.2	258	gAa/gGa					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0011476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	498	300	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29001422	29001422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	288	248	0	ENST00000282397.4:c.1310C>T	p.Ser437Leu	p.S437L	ENST00000282397	NM_002019.4	437	tCg/tTg					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202136256	202136256	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	335	412	0	ENST00000358485.4:c.500T>C	p.Ile167Thr	p.I167T	ENST00000358485	NM_001080125.1	167	aTt/aCt					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142281334	142281334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			478	123	278	0	ENST00000350721.4:c.910C>T	p.Pro304Ser	p.P304S	ENST00000350721	NM_001184.3	304	Ccc/Tcc					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63852764	63852764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			76	146	152	0	ENST00000279873.7:c.3542C>T	p.Ser1181Phe	p.S1181F	ENST00000279873	NM_032199.2	1181	tCc/tTc					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56486824	56486824	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			453	606	510	0	ENST00000267101.3:c.1238C>T	p.Ser413Phe	p.S413F	ENST00000267101	NM_001982.3	413	tCc/tTc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11094961	11094961	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011476-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	286	483	0	ENST00000344626.4:c.134C>T	p.Pro45Leu	p.P45L	ENST00000344626	NM_003072.3	45	cCc/cTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	232	463	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0012366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	99	515	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45374945	45374945	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	268	478	0	ENST00000262160.6:c.898G>C	p.Asp300His	p.D300H	ENST00000262160	NM_005901.5	300	Gat/Cat					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175756	112175762	+	frameshift_variant	Frame_Shift_Del	DEL	TTACATT	TTACATT	-			P-0012366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	75	341	0	ENST00000257430.4:c.4467_4473del	p.His1490ProfsTer15	p.H1490Pfs*15	ENST00000257430	NM_000038.5	1489	TTACATTtt/tt					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120123	70120132	+	frameshift_variant	Frame_Shift_Del	DEL	GCAGCCACAG	GCAGCCACAG	-			P-0012366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	98	87	0	ENST00000245479.2:c.1127_1136del	p.Gln376ArgfsTer4	p.Q376Rfs*4	ENST00000245479	NM_000346.3	375	caGCAGCCACAG/ca					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112136982	112136983	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0012366-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	97	282	0	ENST00000257430.4:c.738_739del	p.Gln247GlufsTer4	p.Q247Efs*4	ENST00000257430	NM_000038.5	246	TCt/t					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46265057	46265057	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013207-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1151	1391	1291	0	ENST00000371998.3:c.1927G>C	p.Asp643His	p.D643H	ENST00000371998		643	Gat/Cat					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			473	296	551	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508539	106508539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	87	198	0	ENST00000359195.3:c.533G>A	p.Arg178His	p.R178H	ENST00000359195	NM_002649.2	178	cGt/cAt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341228	8341228	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	50	584	0	ENST00000356435.5:c.4988G>C	p.Ser1663Thr	p.S1663T	ENST00000356435		1663	aGt/aCt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72991901	72991901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013500-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1055	581	786	0	ENST00000268489.5:c.2144G>C	p.Arg715Pro	p.R715P	ENST00000268489	NM_006885.3	715	cGa/cCa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	51	176	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	567	389	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	359	385	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185190894	185190894	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	303	737	0	ENST00000265026.3:c.1775G>A	p.Arg592Gln	p.R592Q	ENST00000265026	NM_004721.4	592	cGa/cAa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8517974	8517974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	169	547	0	ENST00000356435.5:c.1417G>T	p.Asp473Tyr	p.D473Y	ENST00000356435		473	Gac/Tac					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97873774	97873774	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	283	336	0	ENST00000289081.3:c.1300G>A	p.Asp434Asn	p.D434N	ENST00000289081	NM_000136.2	434	Gat/Aat					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43609021	43609021	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	241	690	0	ENST00000355710.3:c.1777G>C	p.Gly593Arg	p.G593R	ENST00000355710	NM_020975.4	593	Gga/Cga					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12006363	12006363	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	163	401	1	ENST00000396373.4:c.331G>T	p.Asp111Tyr	p.D111Y	ENST00000396373	NM_001987.4	111	Gat/Tat					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49415854	49415854	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	438	484	0	ENST00000301067.7:c.16493C>G	p.Ser5498Cys	p.S5498C	ENST00000301067	NM_003482.3	5498	tCc/tGc					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65569030	65569030	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	774	488	0	ENST00000358664.4:c.28G>T	p.Glu10Ter	p.E10*	ENST00000358664	NM_002382.4	10	Gag/Tag					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10250929	10250929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012049-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	246	367	0	ENST00000340748.4:c.3551C>G	p.Ser1184Cys	p.S1184C	ENST00000340748		1184	tCc/tGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	534	568	2	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0012447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			183	156	254	0	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198274526	198274526	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	88	571	0	ENST00000335508.6:c.872A>T	p.Asn291Ile	p.N291I	ENST00000335508	NM_012433.2	291	aAc/aTc					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153249520	153249520	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	88	358	0	ENST00000281708.4:c.1258C>G	p.His420Asp	p.H420D	ENST00000281708	NM_033632.3	420	Cat/Gat					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153258953	153258953	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0012447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	183	432	0	ENST00000281708.4:c.861+1G>A		p.X287_splice	ENST00000281708	NM_033632.3	287						NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145737572	145737572	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012447-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			410	212	419	0	ENST00000428558.2:c.3191G>A	p.Arg1064His	p.R1064H	ENST00000428558	NM_004260.3	1064	cGc/cAc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			279	381	528	2				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0014761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	354	673	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39755612	39755612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	195	568	2	ENST00000288319.7:c.1153C>T	p.Arg385Cys	p.R385C	ENST00000288319	NM_182918.3	385	Cgc/Tgc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717661	89717661	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			116	273	485	0	ENST00000371953.3:c.686C>G	p.Ser229Ter	p.S229*	ENST00000371953	NM_000314.4	229	tCa/tGa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108236087	108236087	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	254	510	0	ENST00000278616.4:c.9023G>A	p.Arg3008His	p.R3008H	ENST00000278616	NM_000051.3	3008	cGt/cAt					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436315	110436315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	61	371	0	ENST00000375856.3:c.2086G>C	p.Ala696Pro	p.A696P	ENST00000375856	NM_003749.2	696	Gcc/Ccc					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190728620	190728620	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014761-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			616	59	603	0	ENST00000441310.2:c.2008A>G	p.Thr670Ala	p.T670A	ENST00000441310	NM_000534.4	670	Acc/Gcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578445	7578445	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	31	422	0	ENST00000269305.4:c.485T>G	p.Ile162Ser	p.I162S	ENST00000269305	NM_001126112.2	162	aTc/aGc					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81334804	81334804	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	25	420	0	ENST00000222390.5:c.1912G>A	p.Gly638Arg	p.G638R	ENST00000222390	NM_000601.4	638	Gga/Aga					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46240704	46240704	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0012161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	35	463	0	ENST00000334344.6:c.1564A>T	p.Lys522Ter	p.K522*	ENST00000334344	NM_152641.2	522	Aag/Tag					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50912904	50912904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	87	922	1	ENST00000440232.2:c.2135C>T	p.Pro712Leu	p.P712L	ENST00000440232	NM_002691.3	712	cCg/cTg					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36987135	36987135	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	19	231	0	ENST00000354822.5:c.554del	p.Pro185ArgfsTer43	p.P185Rfs*43	ENST00000354822	NM_001079668.2	185	cCg/cg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178917553	178917553	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	129	372	0	ENST00000263967.3:c.428T>C	p.Ile143Thr	p.I143T	ENST00000263967	NM_006218.2	143	aTt/aCt					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139393397	139393397	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1201	224	514	1	ENST00000277541.6:c.6134T>C	p.Val2045Ala	p.V2045A	ENST00000277541	NM_017617.3	2045	gTt/gCt					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70442614	70442614	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			887	180	447	2	ENST00000373644.4:c.4936C>T	p.Arg1646Ter	p.R1646*	ENST00000373644	NM_030625.2	1646	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	305	409	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578370	7578370	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0011271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	244	284	0	ENST00000269305.4:c.559+1G>A		p.X187_splice	ENST00000269305	NM_001126112.2	187						NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575219	48575219	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0011271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	248	343	0	ENST00000342988.3:c.413C>G	p.Ser138Ter	p.S138*	ENST00000342988	NM_005359.5	138	tCa/tGa					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931262	66931262	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	221	298	0	ENST00000374690.3:c.1904T>G	p.Leu635Arg	p.L635R	ENST00000374690	NM_000044.3	635	cTt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578442	7578442	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs148924904		P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			923	24	612	0	ENST00000269305.4:c.488A>G	p.Tyr163Cys	p.Y163C	ENST00000269305	NM_001126112.2	163	tAc/tGc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266113	41266113	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	22	364	0	ENST00000349496.5:c.110C>T	p.Ser37Phe	p.S37F	ENST00000349496	NM_001904.3	37	tCt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578427	7578427	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			855	22	575	0	ENST00000269305.4:c.503A>T	p.His168Leu	p.H168L	ENST00000269305	NM_001126112.2	168	cAc/cTc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115110057	115110057	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1125	117	833	0	ENST00000257566.3:c.1821C>A	p.Tyr607Ter	p.Y607*	ENST00000257566	NM_016569.3	607	taC/taA					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28891679	28891679	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			965	57	562	0	ENST00000282397.4:c.3342G>T	p.Arg1114Ser	p.R1114S	ENST00000282397	NM_002019.4	1114	agG/agT					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28895598	28895599	+	splice_donor_variant	Splice_Site	DEL	AC	AC	-			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			691	39	419	1	ENST00000282397.4:c.3174+1_3174+2del		p.X1058_splice	ENST00000282397	NM_002019.4	1058						NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41243635	41243635	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			901	57	524	0	ENST00000357654.3:c.3913G>T	p.Asp1305Tyr	p.D1305Y	ENST00000357654	NM_007294.3	1305	Gac/Tac					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10597395	10597395	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			994	85	661	1	ENST00000171111.5:c.1808G>A	p.Gly603Glu	p.G603E	ENST00000171111	NM_203500.1	603	gGg/gAg					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215657156	215657156	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			521	38	325	0	ENST00000260947.4:c.229G>C	p.Asp77His	p.D77H	ENST00000260947	NM_000465.2	77	Gac/Cac					NEWRECORD																																																																									
PDCD1	0	MSKCC	GRCh37	2	242795109	242795109	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1000	75	698	1	ENST00000334409.5:c.100C>A	p.Pro34Thr	p.P34T	ENST00000334409	NM_005018.2	34	Ccc/Acc					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39795386	39795386	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			839	59	583	0	ENST00000288319.7:c.334C>A	p.His112Asn	p.H112N	ENST00000288319	NM_182918.3	112	Cac/Aac					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94066599	94066600	+	missense_variant	Missense_Mutation	DNP	CC	CC	AA			P-0014972-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	51	510	0	ENST00000369303.4:c.1159_1160delinsTT	p.Gly387Leu	p.G387L	ENST00000369303	NM_004440.3	387	GGa/TTa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	316	637	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125525214	125525214	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0013630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	179	405	0	ENST00000428830.2:c.1430G>C	p.Ter477SerextTer24	p.*477Sext*24	ENST00000428830	NM_001114121.2	477	tGa/tCa					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876153	35876153	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	108	569	0	ENST00000303115.3:c.945A>T	p.Gln315His	p.Q315H	ENST00000303115	NM_002185.3	315	caA/caT					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8504315	8504315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013630-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1182	64	621	0	ENST00000356435.5:c.1768C>A	p.Pro590Thr	p.P590T	ENST00000356435		590	Cct/Act					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			223	325	249	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577075	7577079	+	frameshift_variant	Frame_Shift_Del	DEL	TTCTC	TTCTC	-			P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			164	675	566	0	ENST00000269305.4:c.859_863del	p.Glu287SerfsTer17	p.E287Sfs*17	ENST00000269305	NM_001126112.2	287	GAGAAt/t					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11168975	11168975	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	137	530	1	ENST00000344626.4:c.4469C>T	p.Ser1490Leu	p.S1490L	ENST00000344626	NM_003072.3	1490	tCg/tTg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41306541	41306541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	161	437	1	ENST00000373198.4:c.1118C>T	p.Pro373Leu	p.P373L	ENST00000373198	NM_133170.3	373	cCa/cTa					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55242466	55242487	+	protein_altering_variant	In_Frame_Del	DEL	GAATTAAGAGAAGCAACATCTC	GAATTAAGAGAAGCAACATCTC	ATCT			P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			188	905	515	2	ENST00000275493.2:c.2236_2257delinsATCT	p.Glu746_Pro753delinsIleSer	p.E746_P753delinsIS	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCAACATCTCcg/ATCTcg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151848628	151848628	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1242	136	431	0	ENST00000262189.6:c.12565G>A	p.Glu4189Lys	p.E4189K	ENST00000262189	NM_170606.2	4189	Gaa/Aaa					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98209504	98209504	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013790-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	155	384	4	ENST00000331920.6:c.4034G>A	p.Arg1345His	p.R1345H	ENST00000331920	NM_000264.3	1345	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	727	890	5	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33289660	33289660	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	130	514	0	ENST00000374542.5:c.43G>A	p.Glu15Lys	p.E15K	ENST00000374542	NM_001141970.1	15	Gaa/Aaa					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287286	33287286	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	188	627	0	ENST00000374542.5:c.1811G>C	p.Gly604Ala	p.G604A	ENST00000374542	NM_001141970.1	604	gGa/gCa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187549454	187549454	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	220	545	0	ENST00000441802.2:c.4664C>G	p.Thr1555Arg	p.T1555R	ENST00000441802	NM_005245.3	1555	aCg/aGg					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022655	31022655	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1259	225	741	0	ENST00000375687.4:c.2140T>C	p.Ser714Pro	p.S714P	ENST00000375687	NM_015338.5	714	Tcc/Ccc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31368196	31368196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1368	247	716	2	ENST00000328111.2:c.67G>A	p.Val23Ile	p.V23I	ENST00000328111	NM_006892.3	23	Gtc/Atc					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411567	63411567	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013283-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			475	260	525	1	ENST00000330258.3:c.1600G>A	p.Glu534Lys	p.E534K	ENST00000330258	NM_152424.3	534	Gag/Aag					NEWRECORD																																																																									
KIT	3815	MSKCC	GRCh37	4	55599340	55599340	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913514		P-0009084-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			589	500	422	0	ENST00000288135.5:c.2466T>A	p.Asn822Lys	p.N822K	ENST00000288135	NM_000222.2	822	aaT/aaA					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009084-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			682	214	426	1	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593441	55593441	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0009084-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			855	854	715	0	ENST00000288135.5:c.1598C>A	p.Ala533Asp	p.A533D	ENST00000288135	NM_000222.2	533	gCt/gAt					NEWRECORD																																																																									
MSH3	0	MSKCC	GRCh37	5	80168985	80168986	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0014620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			664	36	713	0	ENST00000265081.6:c.3183_3184del	p.Gly1062AsnfsTer12	p.G1062Nfs*12	ENST00000265081	NM_002439.4	1061	AGa/a					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8523519	8523519	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014620-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			424	64	396	0	ENST00000356435.5:c.685C>T	p.Arg229Ter	p.R229*	ENST00000356435		229	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			816	37	509	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1174	56	797	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593406	48593406	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			581	27	350	0	ENST00000342988.3:c.1157G>T	p.Gly386Val	p.G386V	ENST00000342988	NM_005359.5	386	gGt/gTt					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65309745	65309745	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0014670-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			706	42	409	0	ENST00000342505.4:c.2403+2T>G		p.X801_splice	ENST00000342505	NM_002227.2	801						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	484	653	1	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579349	7579349	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1071	60	628	0	ENST00000269305.4:c.338T>G	p.Phe113Cys	p.F113C	ENST00000269305	NM_001126112.2	113	tTc/tGc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212251745	212251745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	51	547	1	ENST00000342788.4:c.3314C>T	p.Ser1105Phe	p.S1105F	ENST00000342788	NM_005235.2	1105	tCc/tTc					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50912865	50912865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	81	977	0	ENST00000440232.2:c.2096C>T	p.Ser699Phe	p.S699F	ENST00000440232	NM_002691.3	699	tCc/tTc					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46285666	46285666	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			668	117	538	0	ENST00000334344.6:c.5026C>T	p.Gln1676Ter	p.Q1676*	ENST00000334344	NM_152641.2	1676	Cag/Tag					NEWRECORD																																																																									
MYC	0	MSKCC	GRCh37	8	128750945	128750945	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	122	500	0	ENST00000377970.2:c.482C>T	p.Ser161Leu	p.S161L	ENST00000377970	NM_002467.4	161	tCa/tTa					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67663425	67663425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	109	674	1	ENST00000264010.4:c.1826C>T	p.Ser609Phe	p.S609F	ENST00000264010	NM_006565.3	609	tCc/tTc					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245204	46245204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	124	567	0	ENST00000334344.6:c.3298C>T	p.Gln1100Ter	p.Q1100*	ENST00000334344	NM_152641.2	1100	Cag/Tag					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47693874	47693874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			802	303	766	1	ENST00000233146.2:c.1588G>A	p.Glu530Lys	p.E530K	ENST00000233146	NM_000251.2	530	Gaa/Aaa					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248617	212248617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	67	711	0	ENST00000342788.4:c.3650G>A	p.Gly1217Glu	p.G1217E	ENST00000342788	NM_005235.2	1217	gGa/gAa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187522521	187522521	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	73	790	0	ENST00000441802.2:c.11542G>T	p.Glu3848Ter	p.E3848*	ENST00000441802	NM_005245.3	3848	Gaa/Taa					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176517758	176517758	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	188	997	1	ENST00000292408.4:c.368C>T	p.Ser123Phe	p.S123F	ENST00000292408	NM_213647.1	123	tCc/tTc					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176520268	176520268	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	104	546	0	ENST00000292408.4:c.1187A>G	p.His396Arg	p.H396R	ENST00000292408	NM_213647.1	396	cAc/cGc					NEWRECORD																																																																									
CCND3	0	MSKCC	GRCh37	6	41909348	41909348	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	80	359	0	ENST00000372991.4:c.40C>T	p.Arg14Trp	p.R14W	ENST00000372991	NM_001760.3	14	Cgg/Tgg					NEWRECORD																																																																									
LATS1	9113	MSKCC	GRCh37	6	149997434	149997434	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			909	175	719	0	ENST00000253339.5:c.2845C>T	p.Pro949Ser	p.P949S	ENST00000253339		949	Cct/Tct					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157150512	157150512	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	127	502	0	ENST00000346085.5:c.1694G>A	p.Arg565Gln	p.R565Q	ENST00000346085	NM_020732.3	565	cGg/cAg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508967	106508967	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	62	355	1	ENST00000359195.3:c.961G>A	p.Glu321Lys	p.E321K	ENST00000359195	NM_002649.2	321	Gaa/Aaa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412223	139412223	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	84	693	1	ENST00000277541.6:c.1422C>A	p.Phe474Leu	p.F474L	ENST00000277541	NM_017617.3	474	ttC/ttA					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139417602	139417602	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	83	724	0	ENST00000277541.6:c.442C>T	p.Pro148Ser	p.P148S	ENST00000277541	NM_017617.3	148	Ccc/Tcc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70405202	70405202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	173	451	0	ENST00000373644.4:c.2716G>A	p.Glu906Lys	p.E906K	ENST00000373644	NM_030625.2	906	Gag/Aag					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118376157	118376157	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	151	624	0	ENST00000534358.1:c.9550C>T	p.Pro3184Ser	p.P3184S	ENST00000534358	NM_005933.3	3184	Cct/Tct					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431120	49431120	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	171	689	0	ENST00000301067.7:c.10019A>G	p.Gln3340Arg	p.Q3340R	ENST00000301067	NM_003482.3	3340	cAg/cGg					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56492558	56492558	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			991	60	776	0	ENST00000267101.3:c.2708A>G	p.Glu903Gly	p.E903G	ENST00000267101	NM_001982.3	903	gAg/gGg					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115110092	115110092	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	62	351	1	ENST00000257566.3:c.1786C>T	p.Pro596Ser	p.P596S	ENST00000257566	NM_016569.3	596	Cct/Tct					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88420258	88420258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	165	543	0	ENST00000360948.2:c.2428G>A	p.Glu810Lys	p.E810K	ENST00000360948	NM_001012338.2	810	Gaa/Aaa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10274162	10274162	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	65	438	0	ENST00000330684.3:c.107T>A	p.Ile36Asn	p.I36N	ENST00000330684	NM_001134407.1	36	aTt/aAt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29663933	29663933	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	180	583	0	ENST00000358273.4:c.6427+1G>T		p.X2143_splice	ENST00000358273	NM_001042492.2	2143						NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37681030	37681030	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	202	663	0	ENST00000447079.4:c.3199C>T	p.Arg1067Ter	p.R1067*	ENST00000447079	NM_015083.1	1067	Cga/Tga					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40490782	40490782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	288	838	0	ENST00000264657.5:c.517G>A	p.Asp173Asn	p.D173N	ENST00000264657	NM_139276.2	173	Gat/Aat					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1226569	1226569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	142	625	1	ENST00000326873.7:c.1225C>T	p.Arg409Trp	p.R409W	ENST00000326873	NM_000455.4	409	Cgg/Tgg					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7119497	7119497	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	156	781	0	ENST00000302850.5:c.3757G>A	p.Gly1253Arg	p.G1253R	ENST00000302850	NM_000208.2	1253	Ggg/Agg					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10247764	10247764	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			910	163	917	0	ENST00000340748.4:c.4438G>A	p.Glu1480Lys	p.E1480K	ENST00000340748		1480	Gaa/Aaa					NEWRECORD																																																																									
CEBPA	0	MSKCC	GRCh37	19	33793293	33793293	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	46	481	0	ENST00000498907.2:c.28G>A	p.Glu10Lys	p.E10K	ENST00000498907	NM_004364.3	10	Gag/Aag					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41745616	41745616	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	299	884	2	ENST00000301178.4:c.1303C>T	p.His435Tyr	p.H435Y	ENST00000301178	NM_021913.4	435	Cac/Tac					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50902268	50902268	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	236	1288	0	ENST00000440232.2:c.160G>A	p.Glu54Lys	p.E54K	ENST00000440232	NM_002691.3	54	Gag/Aag					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9560833	9560833	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	160	676	0	ENST00000353224.5:c.949A>T	p.Thr317Ser	p.T317S	ENST00000353224	NM_177990.2	317	Acc/Tcc					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426435	47426435	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	187	481	0	ENST00000377045.4:c.778C>T	p.Pro260Ser	p.P260S	ENST00000377045	NM_001654.4	260	Cca/Tca					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187443387	187443388	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	47	585	1	ENST00000232014.4:c.1738_1739delinsAA	p.Gly580Lys	p.G580K	ENST00000232014	NM_001130845.1	580	GGg/AAg					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48030630	48030631	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	88	947	2	ENST00000234420.5:c.3244_3245delinsTT	p.Pro1082Leu	p.P1082L	ENST00000234420	NM_000179.2	1082	CCg/TTg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162535	47162536	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	50	499	0	ENST00000409792.3:c.3590_3591delinsAA	p.Arg1197Lys	p.R1197K	ENST00000409792	NM_014159.6	1197	aGG/aAA					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139412205	139412206	+	missense_variant,splice_region_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	65	634	0	ENST00000277541.6:c.1439_1440delinsTT	p.Pro480Leu	p.P480L	ENST00000277541	NM_017617.3	480	cCC/cTT					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56792470	56792471	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1049	107	1000	1	ENST00000308159.5:c.200_201delinsAA	p.Arg67Gln	p.R67Q	ENST00000308159	NM_014669.4	67	cGG/cAA					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118376940	118376941	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	137	541	0	ENST00000534358.1:c.10333_10334delinsAT	p.Pro3445Ile	p.P3445I	ENST00000534358	NM_005933.3	3445	CCt/ATt					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248650	59248651	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	222	855	0	ENST00000371222.2:c.92_93delinsTT	p.Pro31Leu	p.P31L	ENST00000371222	NM_002228.3	31	cCC/cTT					NEWRECORD																																																																									
RAB35	0	MSKCC	GRCh37	12	120541689	120541690	+	missense_variant	Missense_Mutation	DNP	CT	CT	TC			P-0012129-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1257	205	1084	2	ENST00000229340.5:c.167_168delinsGA	p.Lys56Arg	p.K56R	ENST00000229340	NM_006861.6	56	aAG/aGA					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			276	203	431	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577105	7577105	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	226	694	1	ENST00000269305.4:c.833delC	p.Pro278LeufsTer67	p.P278Lfs*67	ENST00000269305	NM_001126112.2	278	cCt/ct					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48951001	48951105	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AATTCTGATTACACAGTATCCTCGACATTGATTTCTGTTTTTACCTCCTAAAGAACTGCACAGTGAATCCAAAAGAAAGTATACTGAAAAGAGTGAAGGATATAG	AATTCTGATTACACAGTATCCTCGACATTGATTTCTGTTTTTACCTCCTAAAGAACTGCACAGTGAATCCAAAAGAAAGTATACTGAAAAGAGTGAAGGATATAG	TCTCTTTAAAGATGTATCCTATATCCTTCAC			P-0013720-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			145	49	295	2	ENST00000267163.4:c.1216-53_1267delinsTCTCTTTAAAGATGTATCCTATATCCTTCAC		p.X406_splice	ENST00000267163	NM_000321.2	406						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579359	7579359	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587780066		P-0013798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			793	307	632	0	ENST00000269305.4:c.328del	p.Arg110ValfsTer13	p.R110Vfs*13	ENST00000269305	NM_001126112.2	110	Cgt/gt					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58143032	58143032	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	152	550	0	ENST00000257904.6:c.752C>G	p.Pro251Arg	p.P251R	ENST00000257904	NM_000075.3	251	cCc/cGc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32163618	32163618	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013798-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	86	467	0	ENST00000375023.3:c.5608C>A	p.Pro1870Thr	p.P1870T	ENST00000375023	NM_004557.3	1870	Cct/Act					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	157	425	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	148	307	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0010373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	91	98	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0010373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	91	98	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35873712	35873712	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	62	411	0	ENST00000303115.3:c.668G>A	p.Ser223Asn	p.S223N	ENST00000303115	NM_002185.3	223	aGt/aAt					NEWRECORD																																																																									
MEF2B	0	MSKCC	GRCh37	19	19257633	19257635	+	inframe_deletion	In_Frame_Del	DEL	GGT	GGT	-			P-0010373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1710	126	711	0	ENST00000162023.5:c.591_593del	p.Pro199del	p.P199del	ENST00000162023		197	ccACCc/ccc					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0010373-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	91	98	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	242	393	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	253	456	0	ENST00000269305.4:c.646G>A	p.Val216Met	p.V216M	ENST00000269305	NM_001126112.2	216	Gtg/Atg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120459037	120459037	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	121	493	0	ENST00000256646.2:c.6308C>G	p.Ser2103Cys	p.S2103C	ENST00000256646	NM_024408.3	2103	tCt/tGt					NEWRECORD																																																																									
TMEM127	0	MSKCC	GRCh37	2	96919571	96919571	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1345	306	810	0	ENST00000258439.3:c.692A>T	p.Gln231Leu	p.Q231L	ENST00000258439	NM_001193304.2	231	cAg/cTg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178917510	178917510	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	86	462	0	ENST00000263967.3:c.385G>C	p.Asp129His	p.D129H	ENST00000263967	NM_006218.2	129	Gat/Cat					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158696	26158696	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			72	12	48	1	ENST00000289316.2:c.299G>T	p.Arg100Leu	p.R100L	ENST00000289316	NM_138720.2	100	cGc/cTc					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46275898	46275898	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010267-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			942	645	991	2	ENST00000371998.3:c.3334G>T	p.Gly1112Ter	p.G1112*	ENST00000371998		1112	Gga/Tga					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0011506-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	158	492	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	55	213	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			691	158	457	0	ENST00000269305.4:c.839G>A	p.Arg280Lys	p.R280K	ENST00000269305	NM_001126112.2	280	aGa/aAa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70356162	70356162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			999	173	779	1	ENST00000374080.3:c.5057C>T	p.Ser1686Leu	p.S1686L	ENST00000374080		1686	tCg/tTg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18650565	18650565	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	121	426	0	ENST00000266497.5:c.2776C>G	p.Leu926Val	p.L926V	ENST00000266497		926	Ctt/Gtt					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294370	1294370	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	47	140	1	ENST00000310581.5:c.631G>A	p.Gly211Arg	p.G211R	ENST00000310581	NM_198253.2	211	Ggg/Agg					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156843649	156843649	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	159	456	0	ENST00000524377.1:c.1075T>C	p.Tyr359His	p.Y359H	ENST00000524377	NM_002529.3	359	Tac/Cac					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259646	89259646	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			154	37	149	0	ENST00000336596.2:c.790G>A	p.Glu264Lys	p.E264K	ENST00000336596	NM_005233.5	264	Gaa/Aaa					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143159088	143159088	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	98	528	0	ENST00000262992.4:c.765G>A	p.Met255Ile	p.M255I	ENST00000262992	NM_001101669.1	255	atG/atA					NEWRECORD																																																																									
IDH2	0	MSKCC	GRCh37	15	90630800	90630800	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	126	228	0	ENST00000330062.3:c.686C>T	p.Ser229Leu	p.S229L	ENST00000330062	NM_002168.2	229	tCa/tTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579337	7579337	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	259	360	0	ENST00000269305.4:c.350G>T	p.Gly117Val	p.G117V	ENST00000269305	NM_001126112.2	117	gGg/gTg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21974804	21974808	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCT	CTGCT	-			P-0010421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	17	83	0	ENST00000304494.5:c.19_23del	p.Ser7HisfsTer6	p.S7Hfs*6	ENST00000304494	NM_000077.4	7	AGCAGc/c					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21974804	21974808	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCT	CTGCT	-			P-0010421-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			102	17	83	0	ENST00000304494.5:c.19_23del	p.Ser7HisfsTer6	p.S7Hfs*6	ENST00000304494	NM_000077.4	7	AGCAGc/c					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	180	550	0	ENST00000269305.4:c.844C>G	p.Arg282Gly	p.R282G	ENST00000269305	NM_001126112.2	282	Cgg/Ggg					NEWRECORD																																																																									
AURKB	0	MSKCC	GRCh37	17	8108259	8108259	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	203	526	0	ENST00000585124.1:c.965C>T	p.Ser322Leu	p.S322L	ENST00000585124	NM_004217.3	322	tCa/tTa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47059223	47059223	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	227	359	0	ENST00000409792.3:c.7438C>G	p.Gln2480Glu	p.Q2480E	ENST00000409792	NM_014159.6	2480	Cag/Gag					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55273230	55273230	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	317	471	0	ENST00000275493.2:c.3553G>A	p.Gly1185Ser	p.G1185S	ENST00000275493	NM_005228.3	1185	Ggc/Agc					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37673793	37673793	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2901	299	337	0	ENST00000447079.4:c.2947C>G	p.Arg983Gly	p.R983G	ENST00000447079	NM_015083.1	983	Cga/Gga					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141512	11141513	+	missense_variant	Missense_Mutation	DNP	GA	GA	TT			P-0012056-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	277	515	0	ENST00000344626.4:c.3489_3490delinsTT	p.Asn1164Tyr	p.N1164Y	ENST00000344626	NM_003072.3	1163	ctGAac/ctTTac					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0011433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	892	283	1	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579547	7579547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			437	414	342	1	ENST00000269305.4:c.140del	p.Pro47ArgfsTer76	p.P47Rfs*76	ENST00000269305	NM_001126112.2	47	cCg/cg					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52719107	52719107	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	269	288	0	ENST00000322088.6:c.883G>A	p.Glu295Lys	p.E295K	ENST00000322088	NM_014225.5	295	Gag/Aag					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188309	10188309	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014698-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	265	633	0	ENST00000256474.2:c.452T>G	p.Ile151Ser	p.I151S	ENST00000256474	NM_000551.3	151	aTc/aGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			813	314	399	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508835	106508835	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	276	320	1	ENST00000359195.3:c.829C>T	p.Arg277Trp	p.R277W	ENST00000359195	NM_002649.2	277	Cgg/Tgg					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148515143	148515143	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1116	212	454	0	ENST00000320356.2:c.1066G>A	p.Gly356Arg	p.G356R	ENST00000320356	NM_004456.4	356	Gga/Aga					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8460494	8460494	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	225	403	0	ENST00000356435.5:c.3792A>C	p.Glu1264Asp	p.E1264D	ENST00000356435		1264	gaA/gaC					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851456	63851456	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201542647		P-0012627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			702	97	244	0	ENST00000279873.7:c.2234C>T	p.Ala745Val	p.A745V	ENST00000279873	NM_032199.2	745	gCg/gTg					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40474339	40474339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1661	213	571	1	ENST00000264657.5:c.2062C>T	p.Arg688Trp	p.R688W	ENST00000264657	NM_139276.2	688	Cgg/Tgg					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41574159	41574159	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	141	360	0	ENST00000263253.7:c.6444G>T	p.Gln2148His	p.Q2148H	ENST00000263253	NM_001429.3	2148	caG/caT					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604777	48604833	+	inframe_deletion	In_Frame_Del	DEL	CCAGCTCCTAGACGAAGTACTTCATACCATGCCGATTGCAGACCCACAACCTTTAGA	CCAGCTCCTAGACGAAGTACTTCATACCATGCCGATTGCAGACCCACAACCTTTAGA	-			P-0012627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	45	400	0	ENST00000342988.3:c.1600_1656del	p.Gln534_Asp552del	p.Q534_D552del	ENST00000342988	NM_005359.5	533	ctCCAGCTCCTAGACGAAGTACTTCATACCATGCCGATTGCAGACCCACAACCTTTAGAc/ctc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971024	21971039	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCCAGGCATCGCG	GGCCCCAGGCATCGCG	-			P-0012627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	233	255	0	ENST00000304494.5:c.319_334del	p.Arg107ValfsTer34	p.R107Vfs*34	ENST00000304494	NM_000077.4	107	CGCGATGCCTGGGGCCgt/gt					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971024	21971039	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCCAGGCATCGCG	GGCCCCAGGCATCGCG	-			P-0012627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	233	255	0	ENST00000304494.5:c.319_334del	p.Arg107ValfsTer34	p.R107Vfs*34	ENST00000304494	NM_000077.4	107	CGCGATGCCTGGGGCCgt/gt					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971024	21971039	+	frameshift_variant	Frame_Shift_Del	DEL	GGCCCCAGGCATCGCG	GGCCCCAGGCATCGCG	-			P-0012627-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			485	233	255	0	ENST00000304494.5:c.319_334del	p.Arg107ValfsTer34	p.R107Vfs*34	ENST00000304494	NM_000077.4	107	CGCGATGCCTGGGGCCgt/gt					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134977858	134977858	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	60	370	0	ENST00000398015.3:c.2851C>A	p.Leu951Ile	p.L951I	ENST00000398015	NM_004441.4	951	Ctc/Atc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108168092	108168092	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	59	384	0	ENST00000278616.4:c.4988G>T	p.Gly1663Val	p.G1663V	ENST00000278616	NM_000051.3	1663	gGt/gTt					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121435391	121435391	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	52	391	0	ENST00000257555.6:c.1424C>T	p.Pro475Leu	p.P475L	ENST00000257555		475	cCg/cTg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68842459	68842459	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	47	304	0	ENST00000261769.5:c.520A>T	p.Asn174Tyr	p.N174Y	ENST00000261769	NM_004360.3	174	Aac/Tac					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40827928	40827928	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	63	471	0	ENST00000373198.4:c.2500C>A	p.Arg834Ser	p.R834S	ENST00000373198	NM_133170.3	834	Cgc/Agc					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1317461	1317461	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	77	546	0				ENST00000381566								NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39933515	39933515	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			916	57	486	0	ENST00000378444.4:c.1084G>T	p.Ala362Ser	p.A362S	ENST00000378444	NM_001123385.1	362	Gcc/Tcc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76972671	76972671	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	79	563	0	ENST00000373344.5:c.70C>A	p.His24Asn	p.H24N	ENST00000373344	NM_000489.3	24	Cac/Aac					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108155145	108155145	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	65	421	0	ENST00000278616.4:c.3938del	p.Glu1313GlyfsTer36	p.E1313Gfs*36	ENST00000278616	NM_000051.3	1313	gAg/gg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220597	1220597	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	52	373	0	ENST00000326873.7:c.616del	p.Ala206ArgfsTer81	p.A206Rfs*81	ENST00000326873	NM_000455.4	205	gcG/gc					NEWRECORD																																																																									
NKX3-1	0	MSKCC	GRCh37	8	23539096	23539096	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011041-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	58	400	0	ENST00000380871.4:c.343del	p.Arg115GlyfsTer22	p.R115Gfs*22	ENST00000380871	NM_006167.3	115	Agg/gg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	24	457	0	ENST00000269305.4:c.734G>A	p.Gly245Asp	p.G245D	ENST00000269305	NM_001126112.2	245	gGc/gAc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89390964	89390964	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			888	53	491	0	ENST00000336596.2:c.1030G>A	p.Asp344Asn	p.D344N	ENST00000336596	NM_005233.5	344	Gac/Aac					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21557834	21557834	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	75	541	0	ENST00000382592.4:c.2011A>C	p.Ile671Leu	p.I671L	ENST00000382592	NM_014572.2	671	Atc/Ctc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28959112	28959112	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011559-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	59	564	0	ENST00000282397.4:c.2026A>G	p.Ser676Gly	p.S676G	ENST00000282397	NM_002019.4	676	Agt/Ggt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574012	7574012	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	204	807	0	ENST00000269305.4:c.1015G>T	p.Glu339Ter	p.E339*	ENST00000269305	NM_001126112.2	339	Gag/Tag					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589147	67589147	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			238	50	210	0	ENST00000274335.5:c.1135A>T	p.Lys379Ter	p.K379*	ENST00000274335		379	Aaa/Taa					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591092	67591100	+	inframe_deletion	In_Frame_Del	DEL	GTATGAACA	GTATGAACA	-			P-0014368-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			500	75	300	0	ENST00000274335.5:c.1686_1694del	p.Met563_Ser565del	p.M563_S565del	ENST00000274335		562	cGTATGAACAgc/cgc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			587	198	347	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	21	401	0	ENST00000356142.4:c.85C>A	p.Pro29Thr	p.P29T	ENST00000356142	NM_018890.3	29	Cct/Act					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49426196	49426196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012260-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	65	344	0	ENST00000301067.7:c.12292C>T	p.Pro4098Ser	p.P4098S	ENST00000301067	NM_003482.3	4098	Cca/Tca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576913	7576913	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007307-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			105	365	337	0	ENST00000269305.4:c.933del	p.Asn311LysfsTer34	p.N311Kfs*34	ENST00000269305	NM_001126112.2	311	aaC/aa					NEWRECORD																																																																									
CD274	0	MSKCC	GRCh37	9	5456127	5456127	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0007307-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			519	186	360	0	ENST00000381577.3:c.14C>A	p.Ala5Asp	p.A5D	ENST00000381577	NM_014143.3	5	gCt/gAt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380245	25380245	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0007307-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			858	215	410	0	ENST00000256078.4:c.213del	p.Tyr71Ter	p.Y71*	ENST00000256078	NM_033360.2	71	taC/ta					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			137	363	569	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	348142	348142	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	55	448	0	ENST00000262320.3:c.1364G>T	p.Gly455Val	p.G455V	ENST00000262320	NM_003502.3	455	gGc/gTc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112137030	112137030	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	233	405	0	ENST00000257430.4:c.784G>T	p.Glu262Ter	p.E262*	ENST00000257430	NM_000038.5	262	Gaa/Taa					NEWRECORD																																																																									
HIST1H3E	0	MSKCC	GRCh37	6	26225788	26225788	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014066-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1318	487	1344	4	ENST00000360408.1:c.406G>A	p.Ala136Thr	p.A136T	ENST00000360408	NM_003532.2	136	Gcg/Acg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	56	190	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57755612	57755612	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	103	385	1	ENST00000274289.3:c.175C>T	p.His59Tyr	p.H59Y	ENST00000274289	NM_006622.3	59	Cat/Tat					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8319899	8319899	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			929	362	536	0	ENST00000356435.5:c.5602G>T	p.Gly1868Ter	p.G1868*	ENST00000356435		1868	Gga/Tga					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	736811	736811	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010707-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1189	319	628	0	ENST00000314574.4:c.1288C>T	p.Gln430Ter	p.Q430*	ENST00000314574	NM_005433.3	430	Caa/Taa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0011396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	199	505	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
ERBB2	2064	MSKCC	GRCh37	17	37879658	37879658	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519862		P-0011396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			552	106	260	0	ENST00000269571.5:c.2033G>A	p.Arg678Gln	p.R678Q	ENST00000269571		678	cGg/cAg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604673	48604673	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	45	345	0	ENST00000342988.3:c.1495T>C	p.Cys499Arg	p.C499R	ENST00000342988	NM_005359.5	499	Tgc/Cgc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39911598	39911598	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	259	259	0	ENST00000378444.4:c.5032C>G	p.Arg1678Gly	p.R1678G	ENST00000378444	NM_001123385.1	1678	Cgc/Ggc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112163671	112163671	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	93	490	0	ENST00000257430.4:c.1594C>T	p.Gln532Ter	p.Q532*	ENST00000257430	NM_000038.5	532	Caa/Taa					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30051595	30051595	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	87	387	0	ENST00000338641.4:c.529T>C	p.Tyr177His	p.Y177H	ENST00000338641	NM_000268.3	177	Tat/Cat					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952084	178952084	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			248	200	410	1	ENST00000263967.3:c.3139C>T	p.His1047Tyr	p.H1047Y	ENST00000263967	NM_006218.2	1047	Cat/Tat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577118	7577118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014237-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			124	545	730	0	ENST00000269305.4:c.820G>T	p.Val274Phe	p.V274F	ENST00000269305	NM_001126112.2	274	Gtt/Ttt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	T			P-0010225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	241	255	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27022914	27022942	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	-			P-0010225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			59	18	27	0	ENST00000324856.7:c.31_59del	p.Ser11AlafsTer90	p.S11Afs*90	ENST00000324856	NM_006015.4	7	cCCGCCGCCGCCAGCAGCCTGGGCAACCCG/c					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005200	150005200	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	212	420	1	ENST00000253339.5:c.1025C>A	p.Ser342Ter	p.S342*	ENST00000253339		342	tCa/tAa					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145743003	145743003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	92	96	0	ENST00000428558.2:c.101C>T	p.Ala34Val	p.A34V	ENST00000428558	NM_004260.3	34	gCg/gTg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70117624	70117624	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010225-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	208	326	0	ENST00000245479.2:c.92C>G	p.Ala31Gly	p.A31G	ENST00000245479	NM_000346.3	31	gCg/gGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	621	558	2	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101099	27101099	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	471	769	0	ENST00000324856.7:c.4381C>T	p.Arg1461Ter	p.R1461*	ENST00000324856	NM_006015.4	1461	Cga/Tga					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100922294	100922294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	335	776	1	ENST00000325455.5:c.2218C>T	p.Arg740Ter	p.R740*	ENST00000325455	NM_001202474.3	740	Cga/Tga					NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152265479	152265479	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs766779326		P-0012431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	306	373	0	ENST00000206249.3:c.932C>T	p.Thr311Met	p.T311M	ENST00000206249	NM_000125.3	311	aCg/aTg					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435066	56435066	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012431-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			383	286	406	0	ENST00000407977.2:c.2071C>G	p.Pro691Ala	p.P691A	ENST00000407977		691	Cct/Gct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012448-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	206	487	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0013748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	135	756	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577550	7577550	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	150	668	0	ENST00000269305.4:c.731G>C	p.Gly244Ala	p.G244A	ENST00000269305	NM_001126112.2	244	gGc/gCc					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176673703	176673703	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			993	144	710	0	ENST00000439151.2:c.4403C>G	p.Pro1468Arg	p.P1468R	ENST00000439151	NM_022455.4	1468	cCa/cGa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	155	589	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65560500	65560500	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1192	189	713	1	ENST00000358664.4:c.97C>T	p.Arg33Ter	p.R33*	ENST00000358664	NM_002382.4	33	Cga/Tga					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180052889	180052889	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	150	586	0	ENST00000261937.6:c.1401G>C	p.Lys467Asn	p.K467N	ENST00000261937	NM_182925.4	467	aaG/aaC					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1219938	1220553	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGGGCCTGCTGCCTGAGGCCAGTGGCCTGCTTCCAGCCCATCGCTGGCAGCCGCCTGCCCTGACCAGATCTCCTGGATGCAGGTCTGTGGCCTCAGAGTCAGGGCCCCTTGCTGCTGCAGGACCACAGGGGCAGGGAGGGGCCTGCTGTTCCAGCAAGACTTTGGGGTGCAGCCGGCCTGTGGCCCACAGGAAAATGAGACCTGTGGACATCCGGGGCCCTGCCAGACGTGGCTCGGCCGGACGAGGGTGGCCACTGCAGGCGCAGGTGTGGCTCCCTGCTGGACCTAGCCTTTCCTCTGTCCTGTGTGCCTGGACTTCTGTGACTTCCCAGCTGGGCCTGTGGTGTTTGGGAGGCTCCCAGGCAGCTGCAAAGGGGACCCCTGTGAGGGGCAGGGAGGCCTCGGCCCCAGGACGGGTGTGTGCTGCCCGCAGGTACTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGCCAGGGCATTGTGCACAAGGACATCAAGCCGGGGAACCTGCTGCTCACCACCGGTGGCACCCTCAAAATCTCCGACCTGGGCGTGGCCGAGGTAGGCACGTGCTAGGGGGGGCCCTGGGGCGCCCCCTCCCGGGCACTCC	CTGGGCCTGCTGCCTGAGGCCAGTGGCCTGCTTCCAGCCCATCGCTGGCAGCCGCCTGCCCTGACCAGATCTCCTGGATGCAGGTCTGTGGCCTCAGAGTCAGGGCCCCTTGCTGCTGCAGGACCACAGGGGCAGGGAGGGGCCTGCTGTTCCAGCAAGACTTTGGGGTGCAGCCGGCCTGTGGCCCACAGGAAAATGAGACCTGTGGACATCCGGGGCCCTGCCAGACGTGGCTCGGCCGGACGAGGGTGGCCACTGCAGGCGCAGGTGTGGCTCCCTGCTGGACCTAGCCTTTCCTCTGTCCTGTGTGCCTGGACTTCTGTGACTTCCCAGCTGGGCCTGTGGTGTTTGGGAGGCTCCCAGGCAGCTGCAAAGGGGACCCCTGTGAGGGGCAGGGAGGCCTCGGCCCCAGGACGGGTGTGTGCTGCCCGCAGGTACTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGCCAGGGCATTGTGCACAAGGACATCAAGCCGGGGAACCTGCTGCTCACCACCGGTGGCACCCTCAAAATCTCCGACCTGGGCGTGGCCGAGGTAGGCACGTGCTAGGGGGGGCCCTGGGGCGCCCCCTCCCGGGCACTCC	-			P-0013381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1	95	2	0	ENST00000326873.7:c.465-431_598-24del		p.X155_splice	ENST00000326873	NM_000455.4	155						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578265	7578266	+	frameshift_variant	Frame_Shift_Del	DEL	AT	AT	-			P-0013381-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	142	678	0	ENST00000269305.4:c.583_584del	p.Ile195ProfsTer13	p.I195Pfs*13	ENST00000269305	NM_001126112.2	195	ATc/c					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	340	562	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178936074	178936074	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	156	259	0	ENST00000263967.3:c.1616C>G	p.Pro539Arg	p.P539R	ENST00000263967	NM_006218.2	539	cCt/cGt					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156841466	156841466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014130-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			520	1299	537	2	ENST00000524377.1:c.769G>A	p.Asp257Asn	p.D257N	ENST00000524377	NM_002529.3	257	Gac/Aac					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	405	463	1	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0012529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			381	192	323	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851285	63851285	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	299	417	1	ENST00000279873.7:c.2063C>T	p.Ser688Phe	p.S688F	ENST00000279873	NM_032199.2	688	tCc/tTc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			494	384	632	0	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28959144	28959144	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	499	547	0	ENST00000282397.4:c.1994G>A	p.Arg665Gln	p.R665Q	ENST00000282397	NM_002019.4	665	cGa/cAa					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11307700	11307700	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	275	619	2	ENST00000361445.4:c.1207C>T	p.Arg403Ter	p.R403*	ENST00000361445	NM_004958.3	403	Cga/Tga					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16258503	16258503	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	233	424	0	ENST00000375759.3:c.5768C>T	p.Pro1923Leu	p.P1923L	ENST00000375759	NM_015001.2	1923	cCc/cTc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187541888	187541888	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	404	736	2	ENST00000441802.2:c.5852C>T	p.Thr1951Ile	p.T1951I	ENST00000441802	NM_005245.3	1951	aCc/aTc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151891325	151891325	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	512	523	1	ENST00000262189.6:c.4529A>T	p.Tyr1510Phe	p.Y1510F	ENST00000262189	NM_170606.2	1510	tAt/tTt					NEWRECORD																																																																									
FLCN	0	MSKCC	GRCh37	17	17131397	17131397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	342	513	0	ENST00000285071.4:c.55C>T	p.Leu19Phe	p.L19F	ENST00000285071	NM_144997.5	19	Ctc/Ttc					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9546949	9546949	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	313	446	0	ENST00000353224.5:c.1073C>T	p.Pro358Leu	p.P358L	ENST00000353224	NM_177990.2	358	cCt/cTt					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66511715	66511720	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AAGGTA	AAGGTA	-			P-0012529-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	236	390	0	ENST00000358598.2:c.177_177+5del		p.X59_splice	ENST00000358598	NM_212471.2	59						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			776	108	426	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49431793	49431793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			859	51	512	0	ENST00000301067.7:c.9346C>T	p.Pro3116Ser	p.P3116S	ENST00000301067	NM_003482.3	3116	Cct/Tct					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165283	47165283	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			426	27	242	2	ENST00000409792.3:c.843delA	p.Glu282LysfsTer19	p.E282Kfs*19	ENST00000409792	NM_014159.6	281	aaA/aa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47038822	47038822	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			889	185	722	1	ENST00000329236.7:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000329236	NM_001204466.1	200	Cag/Tag					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123179165	123179165	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			642	54	412	0	ENST00000218089.9:c.614C>G	p.Thr205Arg	p.T205R	ENST00000218089	NM_001042749.1	205	aCa/aGa					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65325803	65325803	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	103	408	0	ENST00000342505.4:c.1319G>T	p.Cys440Phe	p.C440F	ENST00000342505	NM_002227.2	440	tGt/tTt					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100933424	100933424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	41	321	0	ENST00000325455.5:c.1966C>A	p.Leu656Ile	p.L656I	ENST00000325455	NM_001202474.3	656	Ctc/Atc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28622411	28622411	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			481	72	323	0	ENST00000241453.7:c.1205+1G>T		p.X402_splice	ENST00000241453	NM_004119.2	402						NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48878185	48878185	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	24	233	0	ENST00000267163.4:c.137G>T	p.Arg46Met	p.R46M	ENST00000267163	NM_000321.2	46	aGg/aTg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89348365	89348365	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			866	55	717	0	ENST00000301030.4:c.4585A>C	p.Lys1529Gln	p.K1529Q	ENST00000301030	NM_001256183.1	1529	Aaa/Caa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578518	7578518	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1160	203	886	3	ENST00000269305.4:c.412G>A	p.Ala138Thr	p.A138T	ENST00000269305	NM_001126112.2	138	Gcc/Acc					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1623974	1623974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			813	123	491	1	ENST00000344749.5:c.525G>T	p.Lys175Asn	p.K175N	ENST00000344749	NM_001136139.2	175	aaG/aaT					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11098434	11098434	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			935	62	614	0	ENST00000344626.4:c.952del	p.Val318SerfsTer8	p.V318Sfs*8	ENST00000344626	NM_003072.3	318	Gtc/tc					NEWRECORD																																																																									
PRKCI	0	MSKCC	GRCh37	3	169991085	169991085	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	83	360	0	ENST00000295797.4:c.603G>T	p.Met201Ile	p.M201I	ENST00000295797	NM_002740.5	201	atG/atT					NEWRECORD																																																																									
AGO2	0	MSKCC	GRCh37	8	141582974	141582974	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1073	204	649	0	ENST00000220592.5:c.273G>C	p.Lys91Asn	p.K91N	ENST00000220592	NM_012154.3	91	aaG/aaC					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8486175	8486175	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	33	297	0	ENST00000356435.5:c.2642C>A	p.Thr881Lys	p.T881K	ENST00000356435		881	aCa/aAa					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48651667	48651667	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1054	70	723	0	ENST00000376670.3:c.833T>C	p.Val278Ala	p.V278A	ENST00000376670	NM_002049.3	278	gTg/gCg					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53228223	53228223	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015080-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			920	81	638	2	ENST00000375401.3:c.2179G>T	p.Gly727Cys	p.G727C	ENST00000375401	NM_004187.3	727	Ggc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			858	105	505	2	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057835	27057835	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1380	155	893	1	ENST00000324856.7:c.1543C>T	p.Gln515Ter	p.Q515*	ENST00000324856	NM_006015.4	515	Cag/Tag					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56184141	56184141	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1277	96	578	1	ENST00000399503.3:c.4346G>A	p.Trp1449Ter	p.W1449*	ENST00000399503	NM_005921.1	1449	tGg/tAg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11273502	11273502	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	50	422	0	ENST00000361445.4:c.3239G>T	p.Arg1080Leu	p.R1080L	ENST00000361445	NM_004958.3	1080	cGt/cTt					NEWRECORD																																																																									
CDKN2C	0	MSKCC	GRCh37	1	51439790	51439790	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	72	312	0	ENST00000262662.1:c.355G>T	p.Val119Leu	p.V119L	ENST00000262662		119	Gtg/Ttg					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115252217	115252217	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1338	71	609	0	ENST00000369535.4:c.423C>A	p.Phe141Leu	p.F141L	ENST00000369535	NM_002524.4	141	ttC/ttA					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162729746	162729746	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	114	519	0	ENST00000367921.3:c.832A>T	p.Ile278Phe	p.I278F	ENST00000367921	NM_006182.2	278	Atc/Ttc					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47703547	47703547	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	184	646	3	ENST00000233146.2:c.2047G>T	p.Gly683Trp	p.G683W	ENST00000233146	NM_000251.2	683	Ggg/Tgg					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89499505	89499505	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	39	364	0	ENST00000336596.2:c.2675C>A	p.Thr892Asn	p.T892N	ENST00000336596	NM_005233.5	892	aCc/aAc					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169006	32169006	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1327	71	827	0	ENST00000375023.3:c.4027C>T	p.Pro1343Ser	p.P1343S	ENST00000375023	NM_004557.3	1343	Cct/Tct					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50444276	50444276	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs144637662		P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			723	83	369	0	ENST00000331340.3:c.206G>A	p.Arg69His	p.R69H	ENST00000331340	NM_006060.4	69	cGt/cAt					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148512623	148512623	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			968	70	467	0	ENST00000320356.2:c.1521C>G	p.His507Gln	p.H507Q	ENST00000320356	NM_004456.4	507	caC/caG					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5073740	5073740	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	61	539	0	ENST00000381652.3:c.1819A>T	p.Lys607Ter	p.K607*	ENST00000381652	NM_004972.3	607	Aag/Tag					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118307465	118307465	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	119	523	0	ENST00000534358.1:c.238G>C	p.Ala80Pro	p.A80P	ENST00000534358	NM_005933.3	80	Gcc/Ccc					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46230371	46230371	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	111	434	0	ENST00000334344.6:c.706-1G>C		p.X236_splice	ENST00000334344	NM_152641.2	236						NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243487	46243487	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	108	613	0	ENST00000334344.6:c.1840C>T	p.Gln614Ter	p.Q614*	ENST00000334344	NM_152641.2	614	Cag/Tag					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245765	46245765	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	115	467	1	ENST00000334344.6:c.3859G>T	p.Glu1287Ter	p.E1287*	ENST00000334344	NM_152641.2	1287	Gaa/Taa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28883044	28883044	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	105	514	0	ENST00000282397.4:c.3656T>A	p.Phe1219Tyr	p.F1219Y	ENST00000282397	NM_002019.4	1219	tTc/tAc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29008242	29008242	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1156	119	606	1	ENST00000282397.4:c.629C>T	p.Thr210Ile	p.T210I	ENST00000282397	NM_002019.4	210	aCa/aTa					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105241451	105241451	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	127	606	0	ENST00000349310.3:c.529G>T	p.Ala177Ser	p.A177S	ENST00000349310	NM_001014432.1	177	Gcc/Tcc					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41988376	41988376	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1718	126	1047	3	ENST00000219905.7:c.1168G>T	p.Asp390Tyr	p.D390Y	ENST00000219905	NM_001164273.1	390	Gac/Tac					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91333984	91333984	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	54	631	0	ENST00000355112.3:c.2929T>C	p.Ser977Pro	p.S977P	ENST00000355112	NM_000057.2	977	Tct/Cct					NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30134377	30134377	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1338	76	873	0	ENST00000263025.4:c.154G>C	p.Ala52Pro	p.A52P	ENST00000263025	NM_002746.2	52	Gcg/Ccg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207105	1207105	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010054-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	108	609	0	ENST00000326873.7:c.193G>T	p.Glu65Ter	p.E65*	ENST00000326873	NM_000455.4	65	Gag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010261-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			767	713	271	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578203	7578203	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010261-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			400	561	408	0	ENST00000269305.4:c.646G>T	p.Val216Leu	p.V216L	ENST00000269305	NM_001126112.2	216	Gtg/Ttg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162591	47162591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010261-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			228	226	232	0	ENST00000409792.3:c.3535G>C	p.Asp1179His	p.D1179H	ENST00000409792	NM_014159.6	1179	Gac/Cac					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180052932	180052932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010261-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			389	264	296	0	ENST00000261937.6:c.1358C>T	p.Pro453Leu	p.P453L	ENST00000261937	NM_182925.4	453	cCt/cTt					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	533907	533907	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010261-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			605	97	273	0	ENST00000311189.7:c.149C>T	p.Thr50Met	p.T50M	ENST00000311189		50	aCg/aTg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857425	9857425	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010261-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			692	137	343	0	ENST00000330684.3:c.3976G>A	p.Gly1326Ser	p.G1326S	ENST00000330684	NM_001134407.1	1326	Ggc/Agc					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	175956194	175956194	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010261-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			507	31	295	0	ENST00000367669.3:c.2018A>T	p.Lys673Met	p.K673M	ENST00000367669	NM_022457.5	673	aAg/aTg					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89809324	89809324	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010261-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			543	127	275	0	ENST00000389301.3:c.3649T>C	p.Ser1217Pro	p.S1217P	ENST00000389301	NM_000135.2	1217	Tcc/Ccc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53246390	53246390	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	26	353	0	ENST00000375401.3:c.592C>T	p.Arg198Ter	p.R198*	ENST00000375401	NM_004187.3	198	Cga/Tga					NEWRECORD																																																																									
PARP1	0	MSKCC	GRCh37	1	226561964	226561964	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			569	115	498	1	ENST00000366794.5:c.2033A>G	p.Asp678Gly	p.D678G	ENST00000366794	NM_001618.3	678	gAt/gGt					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31025090	31025090	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	163	315	0	ENST00000375687.4:c.4575T>A	p.Asp1525Glu	p.D1525E	ENST00000375687	NM_015338.5	1525	gaT/gaA					NEWRECORD																																																																									
SMARCB1	6598	MSKCC	GRCh37	22	24176339	24176339	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs387906812		P-0010119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	71	530	2	ENST00000263121.7:c.1130G>A	p.Arg377His	p.R377H	ENST00000263121	NM_003073.3	377	cGt/cAt					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0010119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			780	83	417	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206664980	206664980	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	71	433	0	ENST00000367120.3:c.1734-1G>A		p.X578_splice	ENST00000367120	NM_014002.3	578						NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52438481	52438481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	63	480	0	ENST00000460680.1:c.1238A>G	p.Asn413Ser	p.N413S	ENST00000460680	NM_004656.3	413	aAc/aGc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52598243	52598243	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	63	393	0	ENST00000394830.3:c.3623G>A	p.Cys1208Tyr	p.C1208Y	ENST00000394830	NM_018313.4	1208	tGt/tAt					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95598986	95598986	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	52	322	0	ENST00000343455.3:c.173A>G	p.His58Arg	p.H58R	ENST00000343455	NM_177438.2	58	cAt/cGt					NEWRECORD																																																																									
AURKB	0	MSKCC	GRCh37	17	8109854	8109854	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	73	500	0	ENST00000585124.1:c.641T>C	p.Leu214Pro	p.L214P	ENST00000585124	NM_004217.3	214	cTg/cCg					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44945218	44945218	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			975	105	453	2	ENST00000377967.4:c.3542G>T	p.Cys1181Phe	p.C1181F	ENST00000377967	NM_021140.2	1181	tGt/tTt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180047700	180047700	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010119-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	80	521	0	ENST00000261937.6:c.2315del	p.Gly772AlafsTer6	p.G772Afs*6	ENST00000261937	NM_182925.4	772	gGc/gc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692893	89692893	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			335	195	347	1	ENST00000371953.3:c.377C>T	p.Ala126Val	p.A126V	ENST00000371953	NM_000314.4	126	gCt/gTt					NEWRECORD																																																																									
INPPL1	0	MSKCC	GRCh37	11	71943668	71943668	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0014816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			492	26	480	0	ENST00000298229.2:c.1713-2A>T		p.X571_splice	ENST00000298229	NM_001567.3	571						NEWRECORD																																																																									
INPPL1	0	MSKCC	GRCh37	11	71948298	71948298	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			682	174	739	0	ENST00000298229.2:c.3011del	p.Pro1004LeufsTer127	p.P1004Lfs*127	ENST00000298229	NM_001567.3	1004	Cct/ct					NEWRECORD																																																																									
XIAP	0	MSKCC	GRCh37	X	123034522	123034522	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014816-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			482	104	357	0	ENST00000355640.3:c.1279A>G	p.Ser427Gly	p.S427G	ENST00000355640		427	Agt/Ggt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0009367-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			642	304	461	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
FGFR1	2260	MSKCC	GRCh37	8	38274849	38274849	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009367-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			574	296	557	0	ENST00000425967.3:c.1731C>G	p.Asn577Lys	p.N577K	ENST00000425967	NM_001174067.1	577	aaC/aaG					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29663730	29663730	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009367-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			366	342	610	2	ENST00000358273.4:c.6225G>A	p.Trp2075Ter	p.W2075*	ENST00000358273	NM_001042492.2	2075	tgG/tgA					NEWRECORD																																																																									
MAP2K2	0	MSKCC	GRCh37	19	4099271	4099271	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009367-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			660	279	555	2	ENST00000262948.5:c.847G>A	p.Val283Met	p.V283M	ENST00000262948	NM_030662.3	283	Gtg/Atg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68863688	68863688	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0009367-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			212	204	304	1	ENST00000261769.5:c.2430del	p.Phe810LeufsTer6	p.F810Lfs*6	ENST00000261769	NM_004360.3	809	aaT/aa					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56152506	56152506	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0009367-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			545	258	331	0	ENST00000399503.3:c.564del	p.Lys188AsnfsTer2	p.K188Nfs*2	ENST00000399503	NM_005921.1	188	Aaa/aa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115120756	115120756	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0009367-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			688	337	595	2	ENST00000257566.3:c.250del	p.Gln84ArgfsTer4	p.Q84Rfs*4	ENST00000257566	NM_016569.3	84	Cag/ag					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	213	340	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	398867	398867	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1191	208	633	0	ENST00000380956.4:c.677C>A	p.Pro226His	p.P226H	ENST00000380956	NM_001195286.1	226	cCt/cAt					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44913074	44913074	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0012512-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	508	565	0	ENST00000377967.4:c.749G>C	p.Gly250Ala	p.G250A	ENST00000377967	NM_021140.2	250	gGt/gCt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	154	230	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142184028	142184028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			844	214	541	0	ENST00000350721.4:c.6952G>A	p.Asp2318Asn	p.D2318N	ENST00000350721	NM_001184.3	2318	Gat/Aat					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247217	153247217	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			200	767	707	0	ENST00000281708.4:c.1585G>T	p.Glu529Ter	p.E529*	ENST00000281708	NM_033632.3	529	Gag/Tag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151847995	151847995	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	204	387	0	ENST00000262189.6:c.12764C>G	p.Ser4255Ter	p.S4255*	ENST00000262189	NM_170606.2	4255	tCa/tGa					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101907037	101907037	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	316	323	0	ENST00000374994.4:c.997G>A	p.Asp333Asn	p.D333N	ENST00000374994	NM_004612.2	333	Gat/Aat					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49426270	49426270	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	420	803	0	ENST00000301067.7:c.12218C>G	p.Ser4073Ter	p.S4073*	ENST00000301067	NM_003482.3	4073	tCa/tGa					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57864858	57864858	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	589	1024	0	ENST00000228682.2:c.2335A>G	p.Thr779Ala	p.T779A	ENST00000228682	NM_005269.2	779	Aca/Gca					NEWRECORD																																																																									
CALR	0	MSKCC	GRCh37	19	13054727	13054727	+	stop_lost	Nonstop_Mutation	SNP	G	G	C			P-0013291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	407	699	0	ENST00000316448.5:c.1254G>C	p.Ter418TyrextTer9	p.*418Yext*9	ENST00000316448	NM_004343.3	418	taG/taC					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41513776	41513776	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	354	522	0	ENST00000263253.7:c.680C>A	p.Ser227Tyr	p.S227Y	ENST00000263253	NM_001429.3	227	tCt/tAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	27	236	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0011212-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	34	217	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			746	41	418	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
KNSTRN	0	MSKCC	GRCh37	15	40675129	40675129	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014735-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	71	626	1	ENST00000249776.8:c.93C>A	p.Tyr31Ter	p.Y31*	ENST00000249776	NM_033286.3	31	taC/taA					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70349258	70349258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010659-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	34	421	0	ENST00000374080.3:c.3670C>T	p.Leu1224Phe	p.L1224F	ENST00000374080		1224	Ctc/Ttc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0010144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1317	51	774	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	121	440	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2223970	2223970	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	80	654	0	ENST00000326181.6:c.1184A>T	p.His395Leu	p.H395L	ENST00000326181	NM_032271.2	395	cAc/cTc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858475	9858475	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	31	595	0	ENST00000330684.3:c.2926A>T	p.Asn976Tyr	p.N976Y	ENST00000330684	NM_001134407.1	976	Aat/Tat					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123204991	123205017	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TTAAATAGGCCTTCACTATTCTGTGTG	TTAAATAGGCCTTCACTATTCTGTGTG	-			P-0012806-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			151	11	338	0	ENST00000218089.9:c.2359-8_2377del		p.X787_splice	ENST00000218089	NM_001042749.1	787						NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	51	253	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	392	270	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1361	106	381	0	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189582118	189582118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	75	315	0	ENST00000264731.3:c.677G>A	p.Arg226His	p.R226H	ENST00000264731	NM_003722.4	226	cGc/cAc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55946206	55946206	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1599	96	451	0	ENST00000263923.4:c.3973G>A	p.Glu1325Lys	p.E1325K	ENST00000263923	NM_002253.2	1325	Gaa/Aaa					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66197712	66197712	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	60	274	0	ENST00000273854.3:c.2987C>A	p.Ala996Asp	p.A996D	ENST00000273854	NM_004439.5	996	gCt/gAt					NEWRECORD																																																																									
HIST1H3F	0	MSKCC	GRCh37	6	26250500	26250500	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3394	330	1103	1	ENST00000446824.2:c.334G>A	p.Ala112Thr	p.A112T	ENST00000446824	NM_021018.2	112	Gct/Act					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40735454	40735454	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010454-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1405	135	403	0	ENST00000373198.4:c.3419C>A	p.Ala1140Asp	p.A1140D	ENST00000373198	NM_133170.3	1140	gCc/gAc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	297	363	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67100584	67100584	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	301	455	0	ENST00000412916.2:c.283-1G>A		p.X95_splice	ENST00000412916		95						NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115743	8115760	+	frameshift_variant	Frame_Shift_Del	DEL	CAGAAACCGAAAAATGTC	CAGAAACCGAAAAATGTC	G			P-0012750-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			982	96	723	0	ENST00000346208.3:c.1089_1106delinsG	p.Arg364Ter	p.R364*	ENST00000346208		363	acCAGAAACCGAAAAATGTCt/acGt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	428	515	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	221	373	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	168	303	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012252-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			285	168	303	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577556	7577556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			821	88	567	1	ENST00000269305.4:c.725G>A	p.Cys242Tyr	p.C242Y	ENST00000269305	NM_001126112.2	242	tGc/tAc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061113	38061120	+	frameshift_variant	Frame_Shift_Del	DEL	CTCAGGGC	CTCAGGGC	-			P-0014530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			465	26	256	0	ENST00000250448.2:c.869_876del	p.Gly290GlufsTer10	p.G290Efs*10	ENST00000250448	NM_004496.3	290	gGCCCTGAG/g					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7217891	7217891	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	59	445	1	ENST00000380728.2:c.120G>A	p.Met40Ile	p.M40I	ENST00000380728		40	atG/atA					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150001340	150001340	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014530-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			885	68	610	0	ENST00000253339.5:c.2264A>G	p.Asp755Gly	p.D755G	ENST00000253339		755	gAt/gGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	174	193	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	532	421	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175752	112175752	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	256	241	0	ENST00000257430.4:c.4463del	p.Leu1488TyrfsTer19	p.L1488Yfs*19	ENST00000257430	NM_000038.5	1487	acT/ac					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670476	134670476	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	310	324	0	ENST00000398015.3:c.387G>C	p.Trp129Cys	p.W129C	ENST00000398015	NM_004441.4	129	tgG/tgC					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174757	112174757	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	296	294	0	ENST00000257430.4:c.3466G>T	p.Glu1156Ter	p.E1156*	ENST00000257430	NM_000038.5	1156	Gaa/Taa					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18435277	18435277	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	389	370	0	ENST00000266497.5:c.262G>T	p.Glu88Ter	p.E88*	ENST00000266497		88	Gaa/Taa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578542	7578542	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011131-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	214	321	0	ENST00000269305.4:c.388del	p.Leu130SerfsTer40	p.L130Sfs*40	ENST00000269305	NM_001126112.2	130	Ctc/tc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	12	187	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193099338	193099338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	18	220	0	ENST00000367435.3:c.272G>A	p.Arg91Gln	p.R91Q	ENST00000367435	NM_024529.4	91	cGa/cAa					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149435895	149435895	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	85	320	2	ENST00000286301.3:c.2329C>T	p.Arg777Trp	p.R777W	ENST00000286301	NM_005211.3	777	Cgg/Tgg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106523589	106523589	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	35	304	0	ENST00000359195.3:c.2741A>T	p.Lys914Ile	p.K914I	ENST00000359195	NM_002649.2	914	aAa/aTa					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47422661	47422661	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	130	670	0	ENST00000377045.4:c.133C>G	p.Leu45Val	p.L45V	ENST00000377045	NM_001654.4	45	Cta/Gta					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89349294	89349320	+	inframe_deletion	In_Frame_Del	DEL	TCCTTGTACTTTTCTGTGGACTCTTTA	TCCTTGTACTTTTCTGTGGACTCTTTA	-			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	29	1028	0	ENST00000301030.4:c.3630_3656del	p.Lys1211_Asp1219del	p.K1211_D1219del	ENST00000301030	NM_001256183.1	1210	gaTAAAGAGTCCACAGAAAAGTACAAGGAc/gac					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48947588	48947595	+	frameshift_variant	Frame_Shift_Del	DEL	CAAGTGAT	CAAGTGAT	-			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			165	27	272	0	ENST00000267163.4:c.1178_1185del	p.Ser393ThrfsTer10	p.S393Tfs*10	ENST00000267163	NM_000321.2	392	gCAAGTGAT/g					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162743339	162743363	+	frameshift_variant	Frame_Shift_Del	DEL	CCTGGTGGCTGTGAAAATGCTCCGA	CCTGGTGGCTGTGAAAATGCTCCGA	TG			P-0012971-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			311	72	342	0	ENST00000367921.3:c.1809_1833delinsTG	p.Leu604GlyfsTer10	p.L604Gfs*10	ENST00000367921	NM_006182.2	603	gtCCTGGTGGCTGTGAAAATGCTCCGA/gtTG					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0015003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			453	135	348	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578196	7578196	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	336	827	1	ENST00000269305.4:c.653T>A	p.Val218Glu	p.V218E	ENST00000269305	NM_001126112.2	218	gTg/gAg					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156841541	156841541	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1115	158	787	1	ENST00000524377.1:c.844G>A	p.Val282Ile	p.V282I	ENST00000524377	NM_002529.3	282	Gtc/Atc					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95569792	95569792	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015003-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			260	54	278	0	ENST00000343455.3:c.3941G>A	p.Arg1314Gln	p.R1314Q	ENST00000343455	NM_177438.2	1314	cGg/cAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			250	97	405	1	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175480	112175481	+	frameshift_variant	Frame_Shift_Del	DEL	GA	GA	-			P-0010160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			216	239	345	0	ENST00000257430.4:c.4192_4193delAG	p.Arg1399PhefsTer9	p.R1399Ffs*9	ENST00000257430	NM_000038.5	1397	GAg/g					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41268762	41268762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	50	503	0	ENST00000349496.5:c.1000G>A	p.Glu334Lys	p.E334K	ENST00000349496	NM_001904.3	334	Gaa/Aaa					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162683703	162683703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	112	385	0	ENST00000366898.1:c.266G>A	p.Arg89Lys	p.R89K	ENST00000366898	NM_004562.2	89	aGa/aAa					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52723118	52723118	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010160-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	45	230	0	ENST00000322088.6:c.1302+1G>A		p.X434_splice	ENST00000322088	NM_014225.5	434						NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138200267	138200267	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	83	462	0	ENST00000237289.4:c.1685G>A	p.Arg562His	p.R562H	ENST00000237289	NM_001270507.1	562	cGt/cAt					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186507012	186507012	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1401	313	822	0	ENST00000323963.5:c.1178A>G	p.Asn393Ser	p.N393S	ENST00000323963		393	aAt/aGt					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153247186	153247186	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013879-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1419	107	585	0	ENST00000281708.4:c.1616G>C	p.Gly539Ala	p.G539A	ENST00000281708	NM_033632.3	539	gGg/gCg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242467	55242485	+	protein_altering_variant	In_Frame_Del	DEL	AATTAAGAGAAGCAACATC	AATTAAGAGAAGCAACATC	T	rs727504258		P-0010404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			872	153	648	0	ENST00000275493.2:c.2237_2255delinsT	p.Glu746_Ser752delinsVal	p.E746_S752delinsV	ENST00000275493	NM_005228.3	746	gAATTAAGAGAAGCAACATCt/gTt					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88679789	88679789	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010404-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	52	523	0	ENST00000360948.2:c.674A>G	p.Asp225Gly	p.D225G	ENST00000360948	NM_001012338.2	225	gAc/gGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578211	7578211	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1346	371	610	1	ENST00000269305.4:c.638G>T	p.Arg213Leu	p.R213L	ENST00000269305	NM_001126112.2	213	cGa/cTa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112176027	112176027	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0010062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			602	40	382	0	ENST00000257430.4:c.4737del	p.Ile1580PhefsTer70	p.I1580Ffs*70	ENST00000257430	NM_000038.5	1579	aTt/at					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	132	462	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41240285	41240285	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1839	167	559	0	ENST00000379561.5:c.65C>G	p.Ser22Trp	p.S22W	ENST00000379561	NM_002015.3	22	tCg/tGg					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71247373	71247373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1037	129	414	0	ENST00000318789.4:c.160G>A	p.Ala54Thr	p.A54T	ENST00000318789	NM_032682.5	54	Gcc/Acc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173377	112173377	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	43	501	0	ENST00000257430.4:c.2086G>T	p.Glu696Ter	p.E696*	ENST00000257430	NM_000038.5	696	Gaa/Taa					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435653	56435653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	41	325	0	ENST00000407977.2:c.1484C>T	p.Ser495Phe	p.S495F	ENST00000407977		495	tCt/tTt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151845524	151845524	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	59	600	0	ENST00000262189.6:c.13488T>A	p.Phe4496Leu	p.F4496L	ENST00000262189	NM_170606.2	4496	ttT/ttA					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999303	100999303	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			834	88	975	0	ENST00000325455.5:c.499C>T	p.Arg167Trp	p.R167W	ENST00000325455	NM_001202474.3	167	Cgg/Tgg					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911788	32911788	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	79	1074	0	ENST00000380152.3:c.3296C>A	p.Ser1099Ter	p.S1099*	ENST00000380152		1099	tCa/tAa					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435366	56435366	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	75	532	0	ENST00000407977.2:c.1771C>T	p.Pro591Ser	p.P591S	ENST00000407977		591	Cca/Tca					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945586	151945613	+	frameshift_variant	Frame_Shift_Del	DEL	CTTCAATTTGATCTTCGCCACAAATATG	CTTCAATTTGATCTTCGCCACAAATATG	-			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	14	109	0	ENST00000262189.6:c.1906_1933del	p.His636IlefsTer5	p.H636Ifs*5	ENST00000262189	NM_170606.2	636	CATATTTGTGGCGAAGATCAAATTGAAGat/at					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435090	56435090	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	70	563	1	ENST00000407977.2:c.2047del	p.His683IlefsTer17	p.H683Ifs*17	ENST00000407977		683	Cat/at					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56152524	56152524	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	87	254	0	ENST00000399503.3:c.580A>G	p.Met194Val	p.M194V	ENST00000399503	NM_005921.1	194	Atg/Gtg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579514	7579514	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011086-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	428	380	0	ENST00000269305.4:c.173delC	p.Pro58GlnfsTer65	p.P58Qfs*65	ENST00000269305	NM_001126112.2	58	cCa/ca					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256530	115256530	+	missense_variant	Missense_Mutation	SNP	G	G	T	rs121913254		P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	83	395	2	ENST00000369535.4:c.181C>A	p.Gln61Lys	p.Q61K	ENST00000369535	NM_002524.4	61	Caa/Aaa					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098944	178098944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	71	280	0	ENST00000397062.3:c.101G>A	p.Arg34Gln	p.R34Q	ENST00000397062	NM_006164.4	34	cGa/cAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577545	7577545	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1130	142	434	0	ENST00000269305.4:c.736A>C	p.Met246Leu	p.M246L	ENST00000269305	NM_001126112.2	246	Atg/Ctg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			139	18	185	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198288672	198288672	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	88	459	0	ENST00000335508.6:c.55C>G	p.Gln19Glu	p.Q19E	ENST00000335508	NM_012433.2	19	Caa/Gaa					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8073704	8073704	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			667	46	639	0	ENST00000377482.5:c.955G>C	p.Val319Leu	p.V319L	ENST00000377482	NM_018948.3	319	Gta/Cta					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118165789	118165789	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	63	222	0	ENST00000369448.3:c.299C>T	p.Pro100Leu	p.P100L	ENST00000369448	NM_017709.3	100	cCa/cTa					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138664880	138664880	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			180	10	36	0	ENST00000330315.3:c.685G>A	p.Ala229Thr	p.A229T	ENST00000330315	NM_023067.3	229	Gct/Act					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27839802	27839802	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2161	285	883	0	ENST00000328488.2:c.292G>A	p.Glu98Lys	p.E98K	ENST00000328488	NM_003533.2	98	Gag/Aag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31017737	31017737	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1143	167	323	0	ENST00000375687.4:c.599G>T	p.Gly200Val	p.G200V	ENST00000375687	NM_015338.5	200	gGc/gTc					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1325456	1325456	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011192-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	45	383	0	ENST00000381566.1:c.219C>G	p.Asn73Lys	p.N73K	ENST00000381566		73	aaC/aaG					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134977901	134977901	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	109	560	0	ENST00000398015.3:c.2894T>A	p.Ile965Asn	p.I965N	ENST00000398015	NM_004441.4	965	aTc/aAc					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94068118	94068118	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1435	114	698	1	ENST00000369303.4:c.844G>T	p.Gly282Trp	p.G282W	ENST00000369303	NM_004440.3	282	Ggg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578515	7578515	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			815	255	465	0	ENST00000269305.4:c.415A>T	p.Lys139Ter	p.K139*	ENST00000269305	NM_001126112.2	139	Aag/Tag					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12028682	12028682	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1140	69	480	0	ENST00000353533.5:c.885C>G	p.Ile295Met	p.I295M	ENST00000353533	NM_003010.3	295	atC/atG					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50919924	50919924	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	93	616	0	ENST00000440232.2:c.3011C>G	p.Ala1004Gly	p.A1004G	ENST00000440232	NM_002691.3	1004	gCc/gGc					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39742620	39742620	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011175-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	51	254	0	ENST00000361337.2:c.1463G>C	p.Arg488Thr	p.R488T	ENST00000361337	NM_003286.2	488	aGa/aCa					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148504782	148504782	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	34	513	0	ENST00000320356.2:c.2212G>A	p.Ala738Thr	p.A738T	ENST00000320356	NM_004456.4	738	Gcc/Acc					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241669417	241669417	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	29	446	0	ENST00000366560.3:c.790G>C	p.Ala264Pro	p.A264P	ENST00000366560	NM_000143.3	264	Gct/Cct					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183694	10183694	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	113	526	0	ENST00000256474.2:c.163G>T	p.Glu55Ter	p.E55*	ENST00000256474	NM_000551.3	55	Gag/Tag					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6426856	6426856	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	79	609	0	ENST00000356142.4:c.49A>T	p.Thr17Ser	p.T17S	ENST00000356142	NM_018890.3	17	Act/Tct					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72827568	72827568	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	73	1169	0	ENST00000268489.5:c.9013A>C	p.Lys3005Gln	p.K3005Q	ENST00000268489	NM_006885.3	3005	Aag/Cag					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52677306	52677309	+	frameshift_variant	Frame_Shift_Del	DEL	CCTT	CCTT	-			P-0013311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	89	748	0	ENST00000394830.3:c.950_953del	p.Lys317ThrfsTer44	p.K317Tfs*44	ENST00000394830	NM_018313.4	317	aAAGGc/ac					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138383932	138383933	+	missense_variant	Missense_Mutation	DNP	GC	GC	AG			P-0013311-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			600	113	625	0	ENST00000289153.2:c.2617_2618delinsCT	p.Ala873Leu	p.A873L	ENST00000289153	NM_006219.2	873	GCa/CTa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0011281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			486	158	208	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	190	428	0	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139413206	139413206	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			840	128	498	1	ENST00000277541.6:c.936C>A	p.Cys312Ter	p.C312*	ENST00000277541	NM_017617.3	312	tgC/tgA					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2216958	2216958	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011281-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	87	402	0	ENST00000398665.3:c.2413G>A	p.Glu805Lys	p.E805K	ENST00000398665	NM_032482.2	805	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576928	7576928	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0012562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	270	527	0	ENST00000269305.4:c.920-2A>T		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162740300	162740300	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	A			P-0012562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	171	400	1	ENST00000367921.3:c.1502C>A	p.Ser501Ter	p.S501*	ENST00000367921	NM_006182.2	501	tCa/tAa					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187442729	187442729	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0012562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	158	374	1	ENST00000232014.4:c.1977T>A	p.His659Gln	p.H659Q	ENST00000232014	NM_001130845.1	659	caT/caA					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100405	8100405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1178	158	953	1	ENST00000346208.3:c.379C>T	p.Pro127Ser	p.P127S	ENST00000346208		127	Ccg/Tcg					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48942673	48942673	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	148	628	0	ENST00000267163.4:c.1060C>T	p.Gln354Ter	p.Q354*	ENST00000267163	NM_000321.2	354	Cag/Tag					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123196967	123196967	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0012562-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	66	303	0	ENST00000218089.9:c.1733A>G	p.Tyr578Cys	p.Y578C	ENST00000218089	NM_001042749.1	578	tAc/tGc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577558	7577558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			489	263	574	1	ENST00000269305.4:c.723del	p.Cys242AlafsTer5	p.C242Afs*5	ENST00000269305	NM_001126112.2	241	tcC/tc					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186502874	186502874	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013985-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	473	967	1	ENST00000323963.5:c.332G>A	p.Arg111Lys	p.R111K	ENST00000323963		111	aGa/aAa					NEWRECORD																																																																									
HIST2H3D	0	MSKCC	GRCh37	1	149785221	149785221	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			105	31	59	0	ENST00000331491.1:c.16C>T	p.Gln6Ter	p.Q6*	ENST00000331491	NM_001123375.2	6	Cag/Tag					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111884769	111884769	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1205	113	963	0	ENST00000341259.2:c.858C>G	p.Ile286Met	p.I286M	ENST00000341259	NM_005475.2	286	atC/atG					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110437102	110437107	+	inframe_deletion	In_Frame_Del	DEL	CATGGA	CATGGA	-			P-0013925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			38	18	51	0	ENST00000375856.3:c.1294_1299del	p.Ser432_Met433del	p.S432_M433del	ENST00000375856	NM_003749.2	432	TCCATG/-					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579358	7579358	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs11540654		P-0013925-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	311	656	0	ENST00000269305.4:c.329G>C	p.Arg110Pro	p.R110P	ENST00000269305	NM_001126112.2	110	cGt/cCt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			739	540	627	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591891	48591892	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			400	23	459	1	ENST00000342988.3:c.1054_1055delinsTT	p.Gly352Leu	p.G352L	ENST00000342988	NM_005359.5	352	GGa/TTa					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56871634	56871634	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			526	109	459	0	ENST00000308159.5:c.2014G>A	p.Glu672Lys	p.E672K	ENST00000308159	NM_014669.4	672	Gaa/Aaa					NEWRECORD																																																																									
RAD51D	0	MSKCC	GRCh37	17	33430499	33430499	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1275	367	813	1	ENST00000335858.7:c.305del	p.Pro102HisfsTer13	p.P102Hfs*13	ENST00000335858	NM_133629.2	102	cCa/ca					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575194	48575194	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			344	20	296	0	ENST00000342988.3:c.388C>A	p.Pro130Thr	p.P130T	ENST00000342988	NM_005359.5	130	Cca/Aca					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575206	48575206	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			333	29	281	1	ENST00000342988.3:c.400del	p.Glu134AsnfsTer13	p.E134Nfs*13	ENST00000342988	NM_005359.5	134	Gaa/aa					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134873005	134873005	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs183234182		P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			668	202	591	1	ENST00000398015.3:c.1309G>A	p.Val437Ile	p.V437I	ENST00000398015	NM_004441.4	437	Gtt/Att					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123224599	123224599	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014875-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			582	441	565	0	ENST00000218089.9:c.3452C>T	p.Thr1151Ile	p.T1151I	ENST00000218089	NM_001042749.1	1151	aCa/aTa					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			284	246	354	1	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578507	7578507	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			167	512	391	0	ENST00000269305.4:c.423C>G	p.Cys141Trp	p.C141W	ENST00000269305	NM_001126112.2	141	tgC/tgG					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178916924	178916924	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1209	628	801	0	ENST00000263967.3:c.311C>T	p.Pro104Leu	p.P104L	ENST00000263967	NM_006218.2	104	cCa/cTa					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48028193	48028193	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010510-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	351	602	0	ENST00000234420.5:c.3071G>A	p.Arg1024Gln	p.R1024Q	ENST00000234420	NM_000179.2	1024	cGg/cAg					NEWRECORD																																																																									
NRAS	4893	MSKCC	GRCh37	1	115256529	115256529	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs11554290		P-0013035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	299	525	0	ENST00000369535.4:c.182A>G	p.Gln61Arg	p.Q61R	ENST00000369535	NM_002524.4	61	cAa/cGa					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	107	397	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139391062	139391062	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	91	361	0	ENST00000277541.6:c.7129C>G	p.Pro2377Ala	p.P2377A	ENST00000277541	NM_017617.3	2377	Cct/Gct					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5222160	5222160	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013035-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	365	611	1	ENST00000357368.4:c.3175A>G	p.Asn1059Asp	p.N1059D	ENST00000357368	NM_002850.3	1059	Aac/Gac					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	139	494	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	302	624	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	315	697	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578388	7578388	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	205	440	1	ENST00000269305.4:c.542G>A	p.Arg181His	p.R181H	ENST00000269305	NM_001126112.2	181	cGc/cAc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173926	112173926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	259	496	1	ENST00000257430.4:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000257430	NM_000038.5	879	Cag/Tag					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11187847	11187847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	161	322	0	ENST00000361445.4:c.6050T>C	p.Ile2017Thr	p.I2017T	ENST00000361445	NM_004958.3	2017	aTc/aCc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55972029	55972029	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013488-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	148	710	0	ENST00000263923.4:c.1615G>C	p.Gly539Arg	p.G539R	ENST00000263923	NM_002253.2	539	Gga/Cga					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	167	416	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			606	167	416	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48581157	48581157	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0014752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			342	39	237	0	ENST00000342988.3:c.461C>G	p.Ser154Ter	p.S154*	ENST00000342988	NM_005359.5	154	tCa/tGa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242469	55242478	+	protein_altering_variant	In_Frame_Del	DEL	TTAAGAGAAG	TTAAGAGAAG	C	rs727504278		P-0014752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1032	207	570	0	ENST00000275493.2:c.2239_2248delinsC	p.Leu747_Ala750delinsPro	p.L747_A750delinsP	ENST00000275493	NM_005228.3	747	TTAAGAGAAGca/Cca					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133218396	133218396	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1011	184	631	0	ENST00000320574.5:c.5215A>G	p.Ile1739Val	p.I1739V	ENST00000320574	NM_006231.2	1739	Att/Gtt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41514494	41514494	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014752-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	74	500	0	ENST00000373198.4:c.167A>G	p.Gln56Arg	p.Q56R	ENST00000373198	NM_133170.3	56	cAg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579414	7579414	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	195	519	0	ENST00000269305.4:c.273G>A	p.Trp91Ter	p.W91*	ENST00000269305	NM_001126112.2	91	tgG/tgA					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061334	38061334	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012929-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	368	957	0	ENST00000250448.2:c.655C>A	p.Arg219Ser	p.R219S	ENST00000250448	NM_004496.3	219	Cgc/Agc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2104441	2104441	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0014007-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	148	442	0	ENST00000219476.3:c.481G>C	p.Ala161Pro	p.A161P	ENST00000219476	NM_000548.3	161	Gct/Cct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	467	711	2	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	206	676	1	ENST00000269305.4:c.856G>T	p.Glu286Ter	p.E286*	ENST00000269305	NM_001126112.2	286	Gaa/Taa					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212576831	212576831	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	121	585	0	ENST00000342788.4:c.1068C>G	p.Phe356Leu	p.F356L	ENST00000342788	NM_005235.2	356	ttC/ttG					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30673055	30673055	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1760	270	1235	0	ENST00000376406.3:c.3905C>A	p.Thr1302Asn	p.T1302N	ENST00000376406	NM_014641.2	1302	aCc/aAc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133235883	133235883	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0010528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	79	323	0	ENST00000320574.5:c.3273G>C	p.Glu1091Asp	p.E1091D	ENST00000320574	NM_006231.2	1091	gaG/gaC					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937130	76937132	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0010528-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	204	1294	0	ENST00000373344.5:c.3616_3618del	p.Ser1206del	p.S1206del	ENST00000373344	NM_000489.3	1206	TCT/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	52	438	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0013096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	90	677	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916936	178916936	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs886042002		P-0013096-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1445	116	882	4	ENST00000263967.3:c.323G>A	p.Arg108His	p.R108H	ENST00000263967	NM_006218.2	108	cGt/cAt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	28	263	0	ENST00000288602.6:c.1742A>G	p.Asn581Ser	p.N581S	ENST00000288602	NM_004333.4	581	aAt/aGt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1222982	1222982	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	27	281	0	ENST00000326873.7:c.921-2A>T		p.X307_splice	ENST00000326873	NM_000455.4	307						NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215645984	215645984	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	68	559	0	ENST00000260947.4:c.614A>C	p.Lys205Thr	p.K205T	ENST00000260947	NM_000465.2	205	aAg/aCg					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999111	100999111	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	57	753	1	ENST00000325455.5:c.691G>T	p.Glu231Ter	p.E231*	ENST00000325455	NM_001202474.3	231	Gag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610099	10610099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	65	599	0	ENST00000171111.5:c.611G>C	p.Arg204Pro	p.R204P	ENST00000171111	NM_203500.1	204	cGg/cCg					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31387084	31387084	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	66	581	0	ENST00000328111.2:c.1709C>G	p.Ala570Gly	p.A570G	ENST00000328111	NM_006892.3	570	gCc/gGc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8331589	8331589	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012308-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1000	77	752	0	ENST00000356435.5:c.5527del	p.His1843IlefsTer13	p.H1843Ifs*13	ENST00000356435		1843	Cat/at					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9776011	9776011	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	428	283	0	ENST00000377346.4:c.475T>A	p.Trp159Arg	p.W159R	ENST00000377346	NM_005026.3	159	Tgg/Agg					NEWRECORD																																																																									
CDKN2C	0	MSKCC	GRCh37	1	51439730	51439730	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	323	283	0	ENST00000262662.1:c.295G>T	p.Glu99Ter	p.E99*	ENST00000262662		99	Gag/Tag					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156838344	156838344	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2108	298	359	0	ENST00000524377.1:c.622G>T	p.Gly208Trp	p.G208W	ENST00000524377	NM_002529.3	208	Ggg/Tgg					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162740252	162740252	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2094	122	314	0	ENST00000367921.3:c.1454C>G	p.Ser485Cys	p.S485C	ENST00000367921	NM_006182.2	485	tCc/tGc					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204518745	204518745	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	276	263	0	ENST00000367182.3:c.1408G>T	p.Ala470Ser	p.A470S	ENST00000367182	NM_001278516.1	470	Gct/Tct					NEWRECORD																																																																									
INPP4A	0	MSKCC	GRCh37	2	99172272	99172272	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			671	312	295	0	ENST00000074304.5:c.1837+1G>T		p.X613_splice	ENST00000074304	NM_001134224.1	613						NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430673	181430673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	181	251	0	ENST00000325404.1:c.525G>T	p.Gln175His	p.Q175H	ENST00000325404	NM_003106.3	175	caG/caT					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55139846	55139846	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	191	255	0	ENST00000257290.5:c.1507G>C	p.Ala503Pro	p.A503P	ENST00000257290	NM_006206.4	503	Gct/Cct					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630977	187630977	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	185	195	0	ENST00000441802.2:c.5G>T	p.Gly2Val	p.G2V	ENST00000441802	NM_005245.3	2	gGg/gTg					NEWRECORD																																																																									
SDHA	0	MSKCC	GRCh37	5	235396	235396	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1850	260	295	0	ENST00000264932.6:c.1202C>T	p.Pro401Leu	p.P401L	ENST00000264932	NM_004168.2	401	cCt/cTt					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294051	1294051	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2449	642	414	0	ENST00000310581.5:c.950G>T	p.Trp317Leu	p.W317L	ENST00000310581	NM_198253.2	317	tGg/tTg					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35860965	35860965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1527	216	198	0	ENST00000303115.3:c.94G>A	p.Asp32Asn	p.D32N	ENST00000303115	NM_002185.3	32	Gat/Aat					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35874565	35874565	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs141111406		P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2539	365	394	0	ENST00000303115.3:c.721A>G	p.Ile241Val	p.I241V	ENST00000303115	NM_002185.3	241	Atc/Gtc					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876316	35876316	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1867	222	266	0	ENST00000303115.3:c.1108C>A	p.Leu370Met	p.L370M	ENST00000303115	NM_002185.3	370	Ctg/Atg					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35876530	35876530	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1576	102	209	0	ENST00000303115.3:c.1322T>C	p.Leu441Pro	p.L441P	ENST00000303115	NM_002185.3	441	cTg/cCg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32166275	32166275	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	693	350	0	ENST00000375023.3:c.4679C>A	p.Ala1560Glu	p.A1560E	ENST00000375023	NM_004557.3	1560	gCg/gAg					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161969939	161969939	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	318	346	0	ENST00000366898.1:c.1030G>A	p.Glu344Lys	p.E344K	ENST00000366898	NM_004562.2	344	Gag/Aag					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2959081	2959081	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1036	339	339	0	ENST00000396946.4:c.2435A>G	p.His812Arg	p.H812R	ENST00000396946	NM_032415.4	812	cAc/cGc					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729984	41729984	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1638	592	553	2	ENST00000242208.4:c.545C>A	p.Pro182Gln	p.P182Q	ENST00000242208	NM_002192.2	182	cCg/cAg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341160	8341160	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	271	311	0	ENST00000356435.5:c.5056G>C	p.Val1686Leu	p.V1686L	ENST00000356435		1686	Gta/Cta					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484345	8484345	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			842	205	276	0	ENST00000356435.5:c.3187G>C	p.Val1063Leu	p.V1063L	ENST00000356435		1063	Gtg/Ctg					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70333051	70333051	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	976	389	0	ENST00000373644.4:c.956G>T	p.Gly319Val	p.G319V	ENST00000373644	NM_030625.2	319	gGg/gTg					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64574547	64574547	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	365	353	0	ENST00000337652.1:c.863T>C	p.Leu288Pro	p.L288P	ENST00000337652	NM_130803.2	288	cTg/cCg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108121778	108121778	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			407	180	202	0	ENST00000278616.4:c.1586G>T	p.Gly529Val	p.G529V	ENST00000278616	NM_000051.3	529	gGg/gTg					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119144576	119144576	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			759	59	223	0	ENST00000264033.4:c.591-2A>T		p.X197_splice	ENST00000264033	NM_005188.3	197						NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	442694	442694	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1196	869	366	0	ENST00000399788.2:c.1612A>T	p.Thr538Ser	p.T538S	ENST00000399788	NM_001042603.1	538	Acc/Tcc					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944879	31944879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	508	256	0	ENST00000340398.3:c.222C>G	p.Ile74Met	p.I74M	ENST00000340398	NM_001013699.2	74	atC/atG					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73346016	73346016	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			588	244	223	0	ENST00000377767.4:c.1522G>T	p.Asp508Tyr	p.D508Y	ENST00000377767	NM_014953.3	508	Gat/Tat					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103515219	103515219	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	907	299	0	ENST00000355739.4:c.1720G>T	p.Ala574Ser	p.A574S	ENST00000355739	NM_000123.3	574	Gct/Tct					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65544640	65544640	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	737	353	1	ENST00000358664.4:c.286G>T	p.Glu96Ter	p.E96*	ENST00000358664	NM_002382.4	96	Gag/Tag					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007636	45007636	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	114	197	0	ENST00000558401.1:c.83A>T	p.Gln28Leu	p.Q28L	ENST00000558401	NM_004048.2	28	cAg/cTg					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007672	45007672	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	132	212	0	ENST00000558401.1:c.119C>G	p.Ser40Ter	p.S40*	ENST00000558401	NM_004048.2	40	tCa/tGa					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91347474	91347474	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			828	381	340	0	ENST00000355112.3:c.3636A>C	p.Glu1212Asp	p.E1212D	ENST00000355112	NM_000057.2	1212	gaA/gaC					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992298	72992298	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1190	544	552	0	ENST00000268489.5:c.1747G>T	p.Glu583Ter	p.E583*	ENST00000268489	NM_006885.3	583	Gag/Tag					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993039	72993039	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			542	1192	549	0	ENST00000268489.5:c.1006C>T	p.Leu336Phe	p.L336F	ENST00000268489	NM_006885.3	336	Ctt/Ttt					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81819711	81819711	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1019	487	457	0	ENST00000359376.3:c.117G>T	p.Glu39Asp	p.E39D	ENST00000359376	NM_002661.3	39	gaG/gaT					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81942049	81942049	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1004	525	478	0	ENST00000359376.3:c.1586G>T	p.Gly529Val	p.G529V	ENST00000359376	NM_002661.3	529	gGg/gTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	938	455	0	ENST00000269305.4:c.818G>T	p.Arg273Leu	p.R273L	ENST00000269305	NM_001126112.2	273	cGt/cTt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29553474	29553474	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1200	199	271	0	ENST00000358273.4:c.2023G>A	p.Gly675Arg	p.G675R	ENST00000358273	NM_001042492.2	675	Gga/Aga					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29663413	29663413	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	461	290	0	ENST00000358273.4:c.6069G>C	p.Leu2023Phe	p.L2023F	ENST00000358273	NM_001042492.2	2023	ttG/ttC					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39537584	39537584	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	642	303	0	ENST00000262039.4:c.118G>T	p.Glu40Ter	p.E40*	ENST00000262039	NM_002647.2	40	Gaa/Taa					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11132513	11132513	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	705	373	1	ENST00000344626.4:c.2729C>T	p.Thr910Met	p.T910M	ENST00000344626	NM_003072.3	910	aCg/aTg					NEWRECORD																																																																									
DNAJB1	0	MSKCC	GRCh37	19	14628993	14628993	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1516	204	468	0	ENST00000254322.2:c.169G>A	p.Asp57Asn	p.D57N	ENST00000254322	NM_006145.1	57	Gac/Aac					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15271516	15271516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1188	446	383	0	ENST00000263388.2:c.6923G>T	p.Gly2308Val	p.G2308V	ENST00000263388	NM_000435.2	2308	gGg/gTg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15302372	15302372	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1274	385	409	0	ENST00000263388.2:c.899G>T	p.Cys300Phe	p.C300F	ENST00000263388	NM_000435.2	300	tGc/tTc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15302679	15302679	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	583	370	0	ENST00000263388.2:c.680-1G>C		p.X227_splice	ENST00000263388	NM_000435.2	227						NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17955129	17955129	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	1240	313	0	ENST00000458235.1:c.98G>T	p.Arg33Leu	p.R33L	ENST00000458235	NM_000215.3	33	cGg/cTg					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52714660	52714660	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1248	127	325	0	ENST00000322088.6:c.418T>A	p.Trp140Arg	p.W140R	ENST00000322088	NM_014225.5	140	Tgg/Agg					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39932488	39932488	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1564	84	218	0	ENST00000378444.4:c.2111A>G	p.Tyr704Cys	p.Y704C	ENST00000378444	NM_001123385.1	704	tAt/tGt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49446423	49446423	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	362	292	0	ENST00000301067.7:c.1182del	p.Gln395SerfsTer7	p.Q395Sfs*7	ENST00000301067	NM_003482.3	394	ggG/gg					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741392	145741395	+	frameshift_variant	Frame_Shift_Del	DEL	TACG	TACG	-			P-0010715-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1465	974	447	0	ENST00000428558.2:c.1108_1111del	p.Arg370AlafsTer35	p.R370Afs*35	ENST00000428558	NM_004260.3	370	CGTAgc/gc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	69	308	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578550	7578550	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs730881999		P-0011379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	46	268	0	ENST00000269305.4:c.380C>T	p.Ser127Phe	p.S127F	ENST00000269305	NM_001126112.2	127	tCc/tTc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180046703	180046703	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	42	332	0	ENST00000261937.6:c.2609G>A	p.Gly870Asp	p.G870D	ENST00000261937	NM_182925.4	870	gGc/gAc					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9778847	9778847	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	50	251	0	ENST00000377346.4:c.1116G>C	p.Lys372Asn	p.K372N	ENST00000377346	NM_005026.3	372	aaG/aaC					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	26022402	26022402	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	G			P-0011379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	38	289	0	ENST00000435504.4:c.255A>C	p.Lys85Asn	p.K85N	ENST00000435504		85	aaA/aaC					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604680	48604680	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011379-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	56	318	0	ENST00000342988.3:c.1502T>G	p.Leu501Arg	p.L501R	ENST00000342988	NM_005359.5	501	cTc/cGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	270	330	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207021	1207021	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	416	304	0	ENST00000326873.7:c.109C>T	p.Gln37Ter	p.Q37*	ENST00000326873	NM_000455.4	37	Cag/Tag					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	175957522	175957522	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	268	310	1	ENST00000367669.3:c.1874G>A	p.Trp625Ter	p.W625*	ENST00000367669	NM_022457.5	625	tGg/tAg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28893629	28893629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	242	321	0	ENST00000282397.4:c.3217G>T	p.Asp1073Tyr	p.D1073Y	ENST00000282397	NM_002019.4	1073	Gac/Tac					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602746	10602746	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	485	423	0	ENST00000171111.5:c.832C>T	p.Pro278Ser	p.P278S	ENST00000171111	NM_203500.1	278	Ccg/Tcg					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15366106	15366106	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0010609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	440	343	0	ENST00000263377.2:c.2047+2T>A		p.X683_splice	ENST00000263377	NM_058243.2	683						NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187584603	187584603	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	308	486	0	ENST00000441802.2:c.3430del	p.Tyr1144IlefsTer60	p.Y1144Ifs*60	ENST00000441802	NM_005245.3	1144	Tat/at					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59247954	59247955	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0010609-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	284	402	0	ENST00000371222.2:c.788_789delinsTT	p.Arg263Leu	p.R263L	ENST00000371222	NM_002228.3	263	cGC/cTT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	44	416	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484421	57484421	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913495		P-0012269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	53	416	0	ENST00000371085.3:c.602G>A	p.Arg201His	p.R201H	ENST00000371085	NM_000516.4	201	cGt/cAt					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81944157	81944157	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	80	674	2	ENST00000359376.3:c.1766G>A	p.Arg589His	p.R589H	ENST00000359376	NM_002661.3	589	cGc/cAc					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29911104	29911104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	61	457	1	ENST00000376809.5:c.403C>T	p.Arg135Cys	p.R135C	ENST00000376809	NM_002116.7	135	Cgc/Tgc					NEWRECORD																																																																									
PPP6C	0	MSKCC	GRCh37	9	127933461	127933461	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0012269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	62	534	0	ENST00000373547.4:c.76-2A>G		p.X26_splice	ENST00000373547	NM_002721.4	26						NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696653	47696653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	54	647	1	ENST00000347630.2:c.295C>T	p.Arg99Trp	p.R99W	ENST00000347630	NM_001007230.1	99	Cgg/Tgg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0010782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			274	565	370	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	532	289	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0010782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	471	577	2	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47429355	47429355	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010782-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			875	51	424	0	ENST00000377045.4:c.1483T>A	p.Tyr495Asn	p.Y495N	ENST00000377045	NM_001654.4	495	Tac/Aac					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135802659	135802659	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			703	37	489	0	ENST00000298552.3:c.139G>A	p.Asp47Asn	p.D47N	ENST00000298552	NM_001162426.1	47	Gat/Aat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			998	87	582	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			856	144	599	4	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89692904	89692904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909224		P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			762	123	596	1	ENST00000371953.3:c.388C>T	p.Arg130Ter	p.R130*	ENST00000371953	NM_000314.4	130	Cga/Tga					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187524113	187524113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			999	60	785	2	ENST00000441802.2:c.11426C>T	p.Pro3809Leu	p.P3809L	ENST00000441802	NM_005245.3	3809	cCc/cTc					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17741849	17741849	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			343	30	224	2	ENST00000250003.3:c.520G>A	p.Ala174Thr	p.A174T	ENST00000250003	NM_002478.4	174	Gcc/Acc					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121431338	121431338	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			611	38	362	0	ENST00000257555.6:c.542G>A	p.Gly181Glu	p.G181E	ENST00000257555		181	gGg/gAg					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67457244	67457244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			770	46	587	0	ENST00000327367.4:c.218G>A	p.Gly73Asp	p.G73D	ENST00000327367	NM_005902.3	73	gGc/gAc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15272104	15272104	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1155	61	792	0	ENST00000263388.2:c.6335G>A	p.Gly2112Asp	p.G2112D	ENST00000263388	NM_000435.2	2112	gGt/gAt					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39763629	39763629	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			559	37	374	0	ENST00000288319.7:c.823C>T	p.Pro275Ser	p.P275S	ENST00000288319	NM_182918.3	275	Cca/Tca					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15375496	15375496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1394	77	878	0	ENST00000263377.2:c.931C>T	p.Pro311Ser	p.P311S	ENST00000263377	NM_058243.2	311	Ccg/Tcg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89349369	89349369	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1067	66	840	0	ENST00000301030.4:c.3581G>A	p.Gly1194Glu	p.G1194E	ENST00000301030	NM_001256183.1	1194	gGg/gAg					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56488222	56488222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			931	49	561	1	ENST00000267101.3:c.1741G>A	p.Asp581Asn	p.D581N	ENST00000267101	NM_001982.3	581	Gat/Aat					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185146518	185146518	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			736	46	584	0	ENST00000265026.3:c.149G>A	p.Gly50Glu	p.G50E	ENST00000265026	NM_004721.4	50	gGg/gAg					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287255	33287258	+	frameshift_variant	Frame_Shift_Del	DEL	ATTG	ATTG	-			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			714	124	586	0	ENST00000374542.5:c.1839_1842del	p.Phe613LeufsTer31	p.F613Lfs*31	ENST00000374542	NM_001141970.1	613	ttCAAT/tt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76952081	76952081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			729	48	488	1	ENST00000373344.5:c.354G>A	p.Met118Ile	p.M118I	ENST00000373344	NM_000489.3	118	atG/atA					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8073446	8073446	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			691	41	493	0	ENST00000377482.5:c.1213G>A	p.Asp405Asn	p.D405N	ENST00000377482	NM_018948.3	405	Gac/Aac					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101568	27101568	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1106	65	896	1	ENST00000324856.7:c.4850G>A	p.Gly1617Asp	p.G1617D	ENST00000324856	NM_006015.4	1617	gGt/gAt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106183	27106183	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			827	57	615	0	ENST00000324856.7:c.5794G>A	p.Ala1932Thr	p.A1932T	ENST00000324856	NM_006015.4	1932	Gcc/Acc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106678	27106678	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			832	69	696	1	ENST00000324856.7:c.6289G>A	p.Ala2097Thr	p.A2097T	ENST00000324856	NM_006015.4	2097	Gct/Act					NEWRECORD																																																																									
SESN2	0	MSKCC	GRCh37	1	28607227	28607227	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			665	49	513	0	ENST00000253063.3:c.1357G>A	p.Val453Ile	p.V453I	ENST00000253063	NM_031459.4	453	Gtc/Atc					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40363414	40363414	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			896	57	661	2	ENST00000397332.2:c.815C>T	p.Ala272Val	p.A272V	ENST00000397332	NM_001033082.2	272	gCt/gTt					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46532698	46532698	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			643	52	471	1	ENST00000262741.5:c.380C>T	p.Pro127Leu	p.P127L	ENST00000262741	NM_003629.3	127	cCt/cTt					NEWRECORD																																																																									
CDKN2C	0	MSKCC	GRCh37	1	51439857	51439857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			599	38	413	1	ENST00000262662.1:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000262662		141	tGt/tAt					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72058509	72058509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			556	41	402	0	ENST00000357731.5:c.931C>T	p.Pro311Ser	p.P311S	ENST00000357731	NM_173808.2	311	Cct/Tct					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78430028	78430028	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			487	38	369	0	ENST00000370768.2:c.851G>A	p.Arg284Lys	p.R284K	ENST00000370768	NM_003902.3	284	aGa/aAa					NEWRECORD																																																																									
FAM46C	0	MSKCC	GRCh37	1	118165896	118165896	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			519	44	360	0	ENST00000369448.3:c.406G>A	p.Glu136Lys	p.E136K	ENST00000369448	NM_017709.3	136	Gag/Aag					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162724988	162724988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			702	47	435	0	ENST00000367921.3:c.460G>A	p.Asp154Asn	p.D154N	ENST00000367921	NM_006182.2	154	Gac/Aac					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193094256	193094256	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			712	40	507	0	ENST00000367435.3:c.146G>A	p.Gly49Asp	p.G49D	ENST00000367435	NM_024529.4	49	gGc/gAc					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206651124	206651124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1157	63	879	1	ENST00000367120.3:c.734C>T	p.Ala245Val	p.A245V	ENST00000367120	NM_014002.3	245	gCc/gTc					NEWRECORD																																																																									
SMYD3	0	MSKCC	GRCh37	1	246493836	246493836	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			716	42	548	0	ENST00000388985.4:c.340G>A	p.Asp114Asn	p.D114N	ENST00000388985		114	Gat/Aat					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89653866	89653866	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			660	39	456	0	ENST00000371953.3:c.164G>A	p.Arg55Lys	p.R55K	ENST00000371953	NM_000314.4	55	aGg/aAg					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104264007	104264007	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			988	52	644	0	ENST00000369902.3:c.98G>A	p.Gly33Glu	p.G33E	ENST00000369902	NM_016169.3	33	gGa/gAa					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114925549	114925549	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			877	58	661	0	ENST00000543371.1:c.1627G>A	p.Ala543Thr	p.A543T	ENST00000543371	NM_001198531.1	543	Gcc/Acc					NEWRECORD																																																																									
MYOD1	0	MSKCC	GRCh37	11	17742892	17742892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			838	60	679	0	ENST00000250003.3:c.800C>T	p.Pro267Leu	p.P267L	ENST00000250003	NM_002478.4	267	cCc/cTc					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32456564	32456564	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	23	214	0	ENST00000332351.3:c.328C>T	p.Pro110Ser	p.P110S	ENST00000332351	NM_024426.4	110	Ccc/Tcc					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102056776	102056776	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			731	46	534	0	ENST00000282441.5:c.716C>T	p.Ala239Val	p.A239V	ENST00000282441	NM_001130145.2	239	gCc/gTc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108153491	108153491	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			749	44	496	1	ENST00000278616.4:c.3631G>A	p.Ala1211Thr	p.A1211T	ENST00000278616	NM_000051.3	1211	Gca/Aca					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108159725	108159725	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1090	63	799	0	ENST00000278616.4:c.4131T>A	p.Asn1377Lys	p.N1377K	ENST00000278616	NM_000051.3	1377	aaT/aaA					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119169242	119169242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			635	39	428	1	ENST00000264033.4:c.2426C>T	p.Pro809Leu	p.P809L	ENST00000264033	NM_005188.3	809	cCt/cTt					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	416885	416885	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			657	37	405	0	ENST00000399788.2:c.3665G>A	p.Arg1222Lys	p.R1222K	ENST00000399788	NM_001042603.1	1222	aGg/aAg					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18435052	18435052	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			630	96	389	0	ENST00000266497.5:c.37G>A	p.Glu13Lys	p.E13K	ENST00000266497		13	Gaa/Aaa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434484	49434484	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1317	75	845	0	ENST00000301067.7:c.7069G>A	p.Ala2357Thr	p.A2357T	ENST00000301067	NM_003482.3	2357	Gct/Act					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21557561	21557561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1026	57	693	0	ENST00000382592.4:c.2284G>A	p.Val762Ile	p.V762I	ENST00000382592	NM_014572.2	762	Gtc/Atc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29068956	29068956	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			637	34	491	0	ENST00000282397.4:c.25G>A	p.Val9Ile	p.V9I	ENST00000282397	NM_002019.4	9	Gtc/Atc					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32944653	32944653	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			806	46	539	2	ENST00000380152.3:c.8446G>A	p.Gly2816Ser	p.G2816S	ENST00000380152		2816	Ggt/Agt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32945195	32945195	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			927	56	566	2	ENST00000380152.3:c.8590G>A	p.Ala2864Thr	p.A2864T	ENST00000380152		2864	Gcc/Acc					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986760	36986760	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			332	24	191	0	ENST00000354822.5:c.929C>T	p.Ala310Val	p.A310V	ENST00000354822	NM_001079668.2	310	gCc/gTc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88420312	88420312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			794	47	539	1	ENST00000360948.2:c.2374C>T	p.Pro792Ser	p.P792S	ENST00000360948	NM_001012338.2	792	Ccc/Tcc					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23647172	23647172	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1207	65	719	0	ENST00000261584.4:c.695G>A	p.Gly232Asp	p.G232D	ENST00000261584	NM_024675.3	232	gGt/gAt					NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30129072	30129072	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	61	690	0	ENST00000263025.4:c.694G>A	p.Gly232Ser	p.G232S	ENST00000263025	NM_002746.2	232	Ggc/Agc					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81819758	81819758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			675	39	463	1	ENST00000359376.3:c.164G>A	p.Ser55Asn	p.S55N	ENST00000359376	NM_002661.3	55	aGc/aAc					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89805545	89805545	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			709	40	530	0	ENST00000389301.3:c.4163G>A	p.Gly1388Asp	p.G1388D	ENST00000389301	NM_000135.2	1388	gGt/gAt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15960865	15960865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			451	26	264	0	ENST00000268712.3:c.6355G>A	p.Val2119Ile	p.V2119I	ENST00000268712	NM_006311.3	2119	Gtc/Atc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16075254	16075254	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			863	46	477	0	ENST00000268712.3:c.298G>A	p.Asp100Asn	p.D100N	ENST00000268712	NM_006311.3	100	Gat/Aat					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29685503	29685503	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			478	84	327	0	ENST00000358273.4:c.7976A>T	p.Asn2659Ile	p.N2659I	ENST00000358273	NM_001042492.2	2659	aAt/aTt					NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40441509	40441509	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1321	75	796	0	ENST00000345506.4:c.80C>T	p.Pro27Leu	p.P27L	ENST00000345506	NM_003152.3	27	cCc/cTc					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58740658	58740658	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	62	756	0	ENST00000305921.3:c.1563G>A	p.Met521Ile	p.M521I	ENST00000305921	NM_003620.3	521	atG/atA					NEWRECORD																																																																									
H3F3B	0	MSKCC	GRCh37	17	73775192	73775192	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			896	55	574	0	ENST00000254810.4:c.64G>A	p.Ala22Thr	p.A22T	ENST00000254810	NM_005324.3	22	Gcc/Acc					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78933900	78933900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			988	56	700	0	ENST00000306801.3:c.3500G>A	p.Ser1167Asn	p.S1167N	ENST00000306801	NM_020761.2	1167	aGc/aAc					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	743097	743097	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			814	47	496	0	ENST00000314574.4:c.881G>A	p.Gly294Glu	p.G294E	ENST00000314574	NM_005433.3	294	gGa/gAa					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39537704	39537704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			589	32	347	0	ENST00000262039.4:c.238G>A	p.Ala80Thr	p.A80T	ENST00000262039	NM_002647.2	80	Gca/Aca					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2226553	2226553	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1243	76	827	5	ENST00000398665.3:c.4033G>A	p.Ala1345Thr	p.A1345T	ENST00000398665	NM_032482.2	1345	Gcc/Acc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2226988	2226988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			991	64	782	1	ENST00000398665.3:c.4468G>A	p.Gly1490Ser	p.G1490S	ENST00000398665	NM_032482.2	1490	Ggc/Agc					NEWRECORD																																																																									
DNAJB1	0	MSKCC	GRCh37	19	14629073	14629073	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			656	38	471	0	ENST00000254322.2:c.89G>T	p.Arg30Leu	p.R30L	ENST00000254322	NM_006145.1	30	cGc/cTc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15271594	15271594	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1564	84	1146	1	ENST00000263388.2:c.6845C>T	p.Thr2282Ile	p.T2282I	ENST00000263388	NM_000435.2	2282	aCc/aTc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15299941	15299941	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1118	73	644	0	ENST00000263388.2:c.1237G>A	p.Gly413Ser	p.G413S	ENST00000263388	NM_000435.2	413	Ggc/Agc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15302861	15302861	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1369	73	868	0	ENST00000263388.2:c.589C>T	p.Pro197Ser	p.P197S	ENST00000263388	NM_000435.2	197	Ccc/Tcc					NEWRECORD																																																																									
MLL4	0	MSKCC	GRCh37	19	36222821	36222821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1355	83	951	0	ENST00000222270.7:c.5450G>A	p.Gly1817Asp	p.G1817D	ENST00000222270	NM_014727.1	1817	gGt/gAt					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29436886	29436886	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			860	51	668	0	ENST00000389048.3:c.3707G>A	p.Gly1236Asp	p.G1236D	ENST00000389048	NM_004304.4	1236	gGc/gAc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29519909	29519909	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			686	47	586	0	ENST00000389048.3:c.1662G>A	p.Trp554Ter	p.W554*	ENST00000389048	NM_004304.4	554	tgG/tgA					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248498	212248498	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			680	39	510	2	ENST00000342788.4:c.3769G>A	p.Asp1257Asn	p.D1257N	ENST00000342788	NM_005235.2	1257	Gac/Aac					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248732	212248732	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	26	357	0	ENST00000342788.4:c.3535G>A	p.Asp1179Asn	p.D1179N	ENST00000342788	NM_005235.2	1179	Gac/Aac					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227662397	227662397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			755	62	590	0	ENST00000305123.5:c.1058G>A	p.Arg353Lys	p.R353K	ENST00000305123	NM_005544.2	353	aGa/aAa					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227662754	227662754	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1058	66	780	1	ENST00000305123.5:c.701G>A	p.Gly234Glu	p.G234E	ENST00000305123	NM_005544.2	234	gGg/gAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40709529	40709529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			883	54	524	1	ENST00000373198.4:c.4373G>A	p.Ser1458Asn	p.S1458N	ENST00000373198	NM_133170.3	1458	aGc/aAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40790018	40790018	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			768	45	466	0	ENST00000373198.4:c.2713G>A	p.Gly905Ser	p.G905S	ENST00000373198	NM_133170.3	905	Ggc/Agc					NEWRECORD																																																																									
RTEL1	0	MSKCC	GRCh37	20	62293297	62293297	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			882	54	576	0	ENST00000508582.2:c.395+1G>A		p.X132_splice	ENST00000508582		132						NEWRECORD																																																																									
RTEL1	0	MSKCC	GRCh37	20	62316903	62316903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			934	50	686	0	ENST00000508582.2:c.1291G>A	p.Gly431Ser	p.G431S	ENST00000508582		431	Ggc/Agc					NEWRECORD																																																																									
RTEL1	0	MSKCC	GRCh37	20	62324165	62324165	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			887	57	601	1	ENST00000508582.2:c.2732C>T	p.Pro911Leu	p.P911L	ENST00000508582		911	cCc/cTc					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29130606	29130606	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			728	42	487	0	ENST00000328354.6:c.104C>T	p.Ser35Phe	p.S35F	ENST00000328354	NM_007194.3	35	tCc/tTc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41564604	41564604	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			863	55	661	1	ENST00000263253.7:c.4025+1G>A		p.X1342_splice	ENST00000263253	NM_001429.3	1342						NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37067368	37067368	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			636	94	474	0	ENST00000231790.2:c.1279C>T	p.Gln427Ter	p.Q427*	ENST00000231790	NM_000249.3	427	Caa/Taa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47147554	47147554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			799	47	542	0	ENST00000409792.3:c.4772C>T	p.Ala1591Val	p.A1591V	ENST00000409792	NM_014159.6	1591	gCt/gTt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162299	47162299	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			536	31	377	0	ENST00000409792.3:c.3827G>A	p.Ser1276Asn	p.S1276N	ENST00000409792	NM_014159.6	1276	aGt/aAt					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49928902	49928902	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1269	76	993	3	ENST00000296474.3:c.3464G>A	p.Gly1155Asp	p.G1155D	ENST00000296474	NM_002447.2	1155	gGc/gAc					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49933519	49933519	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1387	79	1056	3	ENST00000296474.3:c.2671G>A	p.Ala891Thr	p.A891T	ENST00000296474	NM_002447.2	891	Gct/Act					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52661386	52661386	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			475	26	346	0	ENST00000394830.3:c.1444G>A	p.Ala482Thr	p.A482T	ENST00000394830	NM_018313.4	482	Gca/Aca					NEWRECORD																																																																									
GATA2	0	MSKCC	GRCh37	3	128205754	128205754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1075	60	881	0	ENST00000341105.2:c.121C>T	p.Pro41Ser	p.P41S	ENST00000341105	NM_032638.4	41	Cct/Tct					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142281925	142281925	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			605	32	408	0	ENST00000350721.4:c.319C>T	p.Leu107Phe	p.L107F	ENST00000350721	NM_001184.3	107	Ctt/Ttt					NEWRECORD																																																																									
FGFR3	0	MSKCC	GRCh37	4	1806180	1806180	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1330	70	974	1	ENST00000260795.2:c.1199G>A	p.Ser400Asn	p.S400N	ENST00000260795		400	aGc/aAc					NEWRECORD																																																																									
WHSC1	0	MSKCC	GRCh37	4	1902470	1902470	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1007	54	652	1	ENST00000382891.5:c.89G>A	p.Ser30Asn	p.S30N	ENST00000382891	NM_133335.3	30	aGt/aAt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187518048	187518048	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			831	45	715	0	ENST00000441802.2:c.12646C>T	p.Pro4216Ser	p.P4216S	ENST00000441802	NM_005245.3	4216	Cct/Tct					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1278793	1278793	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			904	50	560	2	ENST00000310581.5:c.2249C>T	p.Ala750Val	p.A750V	ENST00000310581	NM_198253.2	750	gCc/gTc					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294018	1294018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1635	87	1228	1	ENST00000310581.5:c.983C>T	p.Thr328Ile	p.T328I	ENST00000310581	NM_198253.2	328	aCc/aTc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86658440	86658440	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			477	46	268	0	ENST00000274376.6:c.1405G>A	p.Asp469Asn	p.D469N	ENST00000274376	NM_002890.2	469	Gat/Aat					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173965	112173965	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			678	37	357	0	ENST00000257430.4:c.2674G>A	p.Glu892Lys	p.E892K	ENST00000257430	NM_000038.5	892	Gaa/Aaa					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176700690	176700690	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			885	47	522	0	ENST00000439151.2:c.5527G>A	p.Ala1843Thr	p.A1843T	ENST00000439151	NM_022455.4	1843	Gca/Aca					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30675538	30675538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1039	83	731	0	ENST00000376406.3:c.2818G>A	p.Val940Met	p.V940M	ENST00000376406	NM_014641.2	940	Gtg/Atg					NEWRECORD																																																																									
STK19	0	MSKCC	GRCh37	6	31948279	31948279	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			982	55	719	0	ENST00000375331.2:c.855G>A	p.Trp285Ter	p.W285*	ENST00000375331	NM_004197.1	285	tgG/tgA					NEWRECORD																																																																									
TAP2	0	MSKCC	GRCh37	6	32805365	32805365	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	54	697	1	ENST00000374899.4:c.557C>T	p.Pro186Leu	p.P186L	ENST00000374899	NM_018833.2	186	cCc/cTc					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287794	33287794	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1209	65	836	0	ENST00000374542.5:c.1459G>A	p.Ala487Thr	p.A487T	ENST00000374542	NM_001141970.1	487	Gca/Aca					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157099590	157099590	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			275	30	200	0	ENST00000346085.5:c.527C>T	p.Pro176Leu	p.P176L	ENST00000346085	NM_020732.3	176	cCg/cTg					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6048628	6048628	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1091	62	674	1	ENST00000265849.7:c.23G>A	p.Ser8Asn	p.S8N	ENST00000265849	NM_000535.5	8	aGt/aAt					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116340049	116340049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			436	23	270	0	ENST00000397752.3:c.911G>A	p.Arg304Lys	p.R304K	ENST00000397752	NM_000245.2	304	aGa/aAa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116418952	116418952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			610	40	369	0	ENST00000397752.3:c.3463G>A	p.Val1155Met	p.V1155M	ENST00000397752	NM_000245.2	1155	Gtg/Atg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453148	140453148	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			897	24	546	0	ENST00000288602.6:c.1787G>A	p.Gly596Asp	p.G596D	ENST00000288602	NM_004333.4	596	gGt/gAt					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481457	140481457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1082	67	785	1	ENST00000288602.6:c.1351G>A	p.Glu451Lys	p.E451K	ENST00000288602	NM_004333.4	451	Gag/Aag					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151849944	151849944	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			760	40	537	0	ENST00000262189.6:c.12372G>A	p.Met4124Ile	p.M4124I	ENST00000262189	NM_170606.2	4124	atG/atA					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372412	55372412	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1396	80	1043	1	ENST00000297316.4:c.1102C>T	p.His368Tyr	p.H368Y	ENST00000297316	NM_022454.3	368	Cac/Tac					NEWRECORD																																																																									
LYN	0	MSKCC	GRCh37	8	56866473	56866473	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1074	63	812	0	ENST00000519728.1:c.720G>A	p.Trp240Ter	p.W240*	ENST00000519728	NM_002350.3	240	tgG/tgA					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5126332	5126332	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			441	30	261	0	ENST00000381652.3:c.3178-1G>A		p.X1060_splice	ENST00000381652	NM_004972.3	1060						NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8484147	8484147	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			823	49	476	0	ENST00000356435.5:c.3385C>T	p.Pro1129Ser	p.P1129S	ENST00000356435		1129	Cct/Tct					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36840600	36840600	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1216	76	782	0	ENST00000358127.4:c.1133G>A	p.Gly378Glu	p.G378E	ENST00000358127	NM_001280556.1	378	gGa/gAa					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93607728	93607728	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			512	28	279	0	ENST00000375746.1:c.430G>A	p.Glu144Lys	p.E144K	ENST00000375746	NM_001174167.1	144	Gag/Aag					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93641047	93641047	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			562	38	318	1	ENST00000375746.1:c.1393C>T	p.His465Tyr	p.H465Y	ENST00000375746	NM_001174167.1	465	Cat/Tat					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98209351	98209351	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			812	45	512	0	ENST00000331920.6:c.4187G>A	p.Gly1396Glu	p.G1396E	ENST00000331920	NM_000264.3	1396	gGa/gAa					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760609	133760609	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1541	83	1173	2	ENST00000318560.5:c.2932C>T	p.Pro978Ser	p.P978S	ENST00000318560	NM_005157.4	978	Cca/Tca					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139401362	139401362	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1159	74	889	0	ENST00000277541.6:c.3707C>T	p.Pro1236Leu	p.P1236L	ENST00000277541	NM_017617.3	1236	cCc/cTc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70345273	70345273	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013749-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1220	68	779	2	ENST00000374080.3:c.2299G>A	p.Ala767Thr	p.A767T	ENST00000374080		767	Gcc/Acc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013862-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	10	254	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	57	320	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	73	408	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023202	27023202	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010208-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	41	279	0	ENST00000324856.7:c.308C>A	p.Ser103Ter	p.S103*	ENST00000324856	NM_006015.4	103	tCg/tAg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	269	287	1	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	160	264	0	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12645687	12645687	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	263	314	0	ENST00000251849.4:c.782C>G	p.Pro261Arg	p.P261R	ENST00000251849	NM_002880.3	261	cCt/cGt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112164586	112164586	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	181	175	0	ENST00000257430.4:c.1660C>T	p.Arg554Ter	p.R554*	ENST00000257430	NM_000038.5	554	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175720	112175720	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	142	248	0	ENST00000257430.4:c.4429C>T	p.Gln1477Ter	p.Q1477*	ENST00000257430	NM_000038.5	1477	Cag/Tag					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178921567	178921567	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			244	119	204	0	ENST00000263967.3:c.1049A>T	p.Asp350Val	p.D350V	ENST00000263967	NM_006218.2	350	gAc/gTc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16068352	16068352	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011158-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			9	15	14	0	ENST00000268712.3:c.559C>T	p.Arg187Cys	p.R187C	ENST00000268712	NM_006311.3	187	Cgt/Tgt					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7117186	7117186	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	43	877	0	ENST00000302850.5:c.4030G>A	p.Asp1344Asn	p.D1344N	ENST00000302850	NM_000208.2	1344	Gat/Aat					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28903761	28903761	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	52	886	0	ENST00000282397.4:c.2698A>G	p.Lys900Glu	p.K900E	ENST00000282397	NM_002019.4	900	Aag/Gag					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37618930	37618930	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	144	694	3	ENST00000447079.4:c.610del	p.Arg204GlyfsTer134	p.R204Gfs*134	ENST00000447079	NM_015083.1	202	cgA/cg					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37676228	37676230	+	frameshift_variant	Frame_Shift_Del	DEL	GAT	GAT	AA			P-0012857-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	113	895	0	ENST00000447079.4:c.2983_2985delinsAA	p.Asp995AsnfsTer7	p.D995Nfs*7	ENST00000447079	NM_015083.1	995	GAT/AA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	164	400	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0010349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	98	382	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	397187	397187	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	47	354	1	ENST00000380956.4:c.572C>T	p.Pro191Leu	p.P191L	ENST00000380956	NM_001195286.1	191	cCg/cTg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29684323	29684323	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010349-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			299	149	618	0	ENST00000358273.4:c.7906C>T	p.Gln2636Ter	p.Q2636*	ENST00000358273	NM_001042492.2	2636	Caa/Taa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696689	47696689	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1026	147	812	0	ENST00000347630.2:c.259T>A	p.Tyr87Asn	p.Y87N	ENST00000347630	NM_001007230.1	87	Tac/Aac					NEWRECORD																																																																									
HIST1H3A	0	MSKCC	GRCh37	6	26020719	26020719	+	start_lost	Translation_Start_Site	SNP	T	T	G			P-0012324-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	62	1016	0	ENST00000357647.3:c.2T>G	p.Met1?	p.M1?	ENST00000357647	NM_003529.2	1	aTg/aGg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	129	473	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			742	16	591	0	ENST00000269305.4:c.722C>G	p.Ser241Cys	p.S241C	ENST00000269305	NM_001126112.2	241	tCc/tGc					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145739866	145739866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1061	71	810	0	ENST00000428558.2:c.1664C>T	p.Ser555Leu	p.S555L	ENST00000428558	NM_004260.3	555	tCg/tTg					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131944410	131944410	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			357	28	214	0	ENST00000265335.6:c.2822A>T	p.Gln941Leu	p.Q941L	ENST00000265335		941	cAg/cTg					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95572097	95572097	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	65	506	0	ENST00000343455.3:c.3011A>T	p.His1004Leu	p.H1004L	ENST00000343455	NM_177438.2	1004	cAt/cTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577504	7577504	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			629	45	540	0	ENST00000269305.4:c.777C>A	p.Asp259Glu	p.D259E	ENST00000269305	NM_001126112.2	259	gaC/gaA					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9561324	9561324	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012890-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	56	486	0	ENST00000353224.5:c.458del	p.Gly153GlufsTer20	p.G153Efs*20	ENST00000353224	NM_177990.2	153	gGa/ga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			373	715	413	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	402	537	1	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49422611	49422611	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0011191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	470	434	0	ENST00000301067.7:c.14382G>C	p.Lys4794Asn	p.K4794N	ENST00000301067	NM_003482.3	4794	aaG/aaC					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971094	21971101	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCCGGG	CTCCCGGG	-			P-0011191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	281	250	0	ENST00000304494.5:c.257_264del	p.Ala86GlyfsTer31	p.A86Gfs*31	ENST00000304494	NM_000077.4	86	gCCCGGGAG/g					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971094	21971101	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCCGGG	CTCCCGGG	-			P-0011191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	281	250	0	ENST00000304494.5:c.257_264del	p.Ala86GlyfsTer31	p.A86Gfs*31	ENST00000304494	NM_000077.4	86	gCCCGGGAG/g					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971094	21971102	+	frameshift_variant	Frame_Shift_Del	DEL	CTCCCGGGC	CTCCCGGGC	A			P-0011191-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	281	250	0	ENST00000304494.5:c.256_264delinsT	p.Ala86TrpfsTer31	p.A86Wfs*31	ENST00000304494	NM_000077.4	86	GCCCGGGAG/T					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578547	7578547	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	153	279	0	ENST00000269305.4:c.383del	p.Pro128LeufsTer42	p.P128Lfs*42	ENST00000269305	NM_001126112.2	128	cCt/ct					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8331643	8331643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			938	227	593	0	ENST00000356435.5:c.5473G>A	p.Gly1825Ser	p.G1825S	ENST00000356435		1825	Ggc/Agc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29001999	29001999	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	99	329	1	ENST00000282397.4:c.1166C>T	p.Ser389Leu	p.S389L	ENST00000282397	NM_002019.4	389	tCg/tTg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67650729	67650729	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1164	165	438	0	ENST00000264010.4:c.1034A>C	p.His345Pro	p.H345P	ENST00000264010	NM_006565.3	345	cAc/cCc					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186502859	186502899	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TATTGGCCCCCACCAGAGAACTGGCTCAACAGGTATTGATA	TATTGGCCCCCACCAGAGAACTGGCTCAACAGGTATTGATA	-			P-0010553-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1149	162	748	0	ENST00000323963.5:c.317_348+9del		p.X106_splice	ENST00000323963		106						NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426127	47426127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011050-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			635	414	699	0	ENST00000377045.4:c.647C>G	p.Pro216Arg	p.P216R	ENST00000377045	NM_001654.4	216	cCc/cGc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40944629	40944639	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GATAAACACTG	GATAAACACTG	-			P-0014581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			387	135	227	0	ENST00000373198.4:c.1866-3_1873del		p.X622_splice	ENST00000373198	NM_133170.3	622						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112179312	112179326	+	inframe_deletion	In_Frame_Del	DEL	CTCCCACAGGTAATA	CTCCCACAGGTAATA	-			P-0014581-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			454	99	278	0	ENST00000257430.4:c.8026_8040del	p.Thr2676_Pro2680del	p.T2676_P2680del	ENST00000257430	NM_000038.5	2674	tCTCCCACAGGTAATAct/tct					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			597	60	421	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419926	152419926	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014407-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	43	552	0	ENST00000206249.3:c.1613A>G	p.Asp538Gly	p.D538G	ENST00000206249	NM_000125.3	538	gAc/gGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577568	7577568	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014973-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			429	263	606	0	ENST00000269305.4:c.713G>T	p.Cys238Phe	p.C238F	ENST00000269305	NM_001126112.2	238	tGt/tTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	554	447	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	342	733	0	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35871286	35871286	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs145210284		P-0010839-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			328	151	241	0	ENST00000303115.3:c.508C>T	p.Arg170Cys	p.R170C	ENST00000303115	NM_002185.3	170	Cgc/Tgc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115118704	115118706	+	inframe_deletion	In_Frame_Del	DEL	TGT	TGT	-			P-0012998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	288	654	0	ENST00000257566.3:c.635_637del	p.Asn212del	p.N212del	ENST00000257566	NM_016569.3	212	aACAtt/att					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061220	38061225	+	inframe_deletion	In_Frame_Del	DEL	CGTTCT	CGTTCT	-			P-0012998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	207	535	0	ENST00000250448.2:c.764_769del	p.Glu255_Asn256del	p.E255_N256del	ENST00000250448	NM_004496.3	255	gAGAACGgc/ggc					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58740479	58740479	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012998-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1391	569	985	0	ENST00000305921.3:c.1384C>T	p.Gln462Ter	p.Q462*	ENST00000305921	NM_003620.3	462	Caa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	37	504	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	20	335	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	20	335	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			341	20	335	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577029	7577042	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCCTGGGGGCA	GCTCCCTGGGGGCA	-			P-0012814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			790	42	548	0	ENST00000269305.4:c.896_909del	p.Leu299HisfsTer2	p.L299Hfs*2	ENST00000269305	NM_001126112.2	299	cTGCCCCCAGGGAGC/c					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014505-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	339	561	0	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0007268-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			323	8	1057	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2978321	2978321	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs138920531		P-0007268-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			187	81	750	0	ENST00000396946.4:c.1009C>T	p.Arg337Ter	p.R337*	ENST00000396946	NM_032415.4	337	Cga/Tga					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0007839-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			620	150	195	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0007839-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			463	26	315	1	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89720799	89720802	+	frameshift_variant	Frame_Shift_Del	DEL	TACT	TACT	-			P-0007839-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			58	52	103	0	ENST00000371953.3:c.955_958del	p.Thr319Ter	p.T319*	ENST00000371953	NM_000314.4	317	gTACTt/gt					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061701	38061701	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0007839-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			250	168	186	0	ENST00000250448.2:c.288G>A	p.Met96Ile	p.M96I	ENST00000250448	NM_004496.3	96	atG/atA					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245335	153245335	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0007839-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			165	303	398	1	ENST00000281708.4:c.1855+1G>T		p.X619_splice	ENST00000281708	NM_033632.3	619						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7573269	7573967	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGTGTAATGGTGAGATCTCAGCTCACCGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGGTAGCTGGGATTACAGGCATGCATCACCACGCCCGGCTACTTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGGCTCAAACTCCCGACCTCAGGTGATCCACTCGCCTTGGCCTCCCAGAGTGTGGGATTCGTGAGCCACTGCGCCCGGCCCCCTTACCCCATTTTATATATAAGGAAACTGAGTTTGACGGGGGTCACCTAGGACCTGCCGGTGCATGGCAGGGCTGAGTATATGACCTGAAACTCTGGCTGTATTCAGTATTACACAATTATTAGGCCCCTCCTTGAGACCCTCCAGCTCTGGGCTGGGAGTTGCGGAGAATGGCAAAGAAGTATCCACACTCGTCCCTGGGTTTGGATGTTCTGTGGATACACTGAGGCAAGAATGTGGTTATAGGATTCAACCGGAGGAAGACTAAAAAAATGTCTGTGCAGGGCTGGGACCCAATGAGATGGGGTCAGCTGCCTTTGACCATGAAGGCAGGATGAGAATGGAATCCTATGGCTTTCCAACCTAGGAAGGCAGGGGAGTAGGGCCAGGAAGGGGCTGAGGTCACTCACCTGGAGTGAGCCCTGCTCCCCCCTGGCTCCTTCCCAGCCTG	AGTGTAATGGTGAGATCTCAGCTCACCGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGGTAGCTGGGATTACAGGCATGCATCACCACGCCCGGCTACTTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGGCTCAAACTCCCGACCTCAGGTGATCCACTCGCCTTGGCCTCCCAGAGTGTGGGATTCGTGAGCCACTGCGCCCGGCCCCCTTACCCCATTTTATATATAAGGAAACTGAGTTTGACGGGGGTCACCTAGGACCTGCCGGTGCATGGCAGGGCTGAGTATATGACCTGAAACTCTGGCTGTATTCAGTATTACACAATTATTAGGCCCCTCCTTGAGACCCTCCAGCTCTGGGCTGGGAGTTGCGGAGAATGGCAAAGAAGTATCCACACTCGTCCCTGGGTTTGGATGTTCTGTGGATACACTGAGGCAAGAATGTGGTTATAGGATTCAACCGGAGGAAGACTAAAAAAATGTCTGTGCAGGGCTGGGACCCAATGAGATGGGGTCAGCTGCCTTTGACCATGAAGGCAGGATGAGAATGGAATCCTATGGCTTTCCAACCTAGGAAGGCAGGGGAGTAGGGCCAGGAAGGGGCTGAGGTCACTCACCTGGAGTGAGCCCTGCTCCCCCCTGGCTCCTTCCCAGCCTG	-			P-0014040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3	113	5	0	ENST00000269305.4:c.1061_1101-260del		p.X354_splice	ENST00000269305	NM_001126112.2	354						NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1272317	1272317	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014040-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	104	536	2	ENST00000310581.5:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000310581	NM_198253.2	789	Gcc/Acc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0015002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			451	138	625	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099026	27099026	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0015002-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	75	721	0	ENST00000324856.7:c.3442C>T	p.Gln1148Ter	p.Q1148*	ENST00000324856	NM_006015.4	1148	Cag/Tag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	10	203	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0010527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	36	182	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437782	52437782	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0010527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1114	75	987	0	ENST00000460680.1:c.1379C>G	p.Ser460Ter	p.S460*	ENST00000460680	NM_004656.3	460	tCa/tGa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52436821	52436821	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			692	42	541	0	ENST00000460680.1:c.1957G>A	p.Glu653Lys	p.E653K	ENST00000460680	NM_004656.3	653	Gag/Aag					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437465	52437465	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			737	71	653	0	ENST00000460680.1:c.1696G>T	p.Glu566Ter	p.E566*	ENST00000460680	NM_004656.3	566	Gag/Tag					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103510646	103510646	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	86	275	0	ENST00000355739.4:c.550C>T	p.Gln184Ter	p.Q184*	ENST00000355739	NM_000123.3	184	Caa/Taa					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89874760	89874760	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	38	336	0	ENST00000389301.3:c.538G>C	p.Glu180Gln	p.E180Q	ENST00000389301	NM_000135.2	180	Gaa/Caa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5208260	5208260	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	47	465	0	ENST00000357368.4:c.5630C>G	p.Ser1877Cys	p.S1877C	ENST00000357368	NM_002850.3	1877	tCt/tGt					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10260206	10260206	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	46	404	0	ENST00000340748.4:c.2461G>C	p.Glu821Gln	p.E821Q	ENST00000340748		821	Gag/Cag					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11094995	11094995	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	159	484	0	ENST00000344626.4:c.168C>G	p.Ile56Met	p.I56M	ENST00000344626	NM_003072.3	56	atC/atG					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39913197	39913197	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010527-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1675	103	740	0	ENST00000378444.4:c.4918G>C	p.Glu1640Gln	p.E1640Q	ENST00000378444	NM_001123385.1	1640	Gaa/Caa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0012367-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			114	471	619	2	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	67	462	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0014156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	47	488	0	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175921	112175921	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014156-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	19	329	0	ENST00000257430.4:c.4630G>T	p.Glu1544Ter	p.E1544*	ENST00000257430	NM_000038.5	1544	Gaa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			774	400	433	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0010063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			522	117	366	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	110	363	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	110	363	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			433	110	363	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575090	48575090	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010063-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	209	606	0	ENST00000342988.3:c.284A>G	p.Tyr95Cys	p.Y95C	ENST00000342988	NM_005359.5	95	tAt/tGt					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			506	256	389	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023482	27023483	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0012538-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			259	326	445	0	ENST00000324856.7:c.590_591del	p.Gly197AlafsTer202	p.G197Afs*202	ENST00000324856	NM_006015.4	196	gcGGgg/gcgg					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0009874-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			353	128	633	2	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128846356	128846356	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0009874-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			725	133	1293	3	ENST00000249373.3:c.1192C>T	p.Arg398Ter	p.R398*	ENST00000249373	NM_005631.4	398	Cga/Tga					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46264194	46264194	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009874-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	130	1370	1	ENST00000371998.3:c.1241G>A	p.Ser414Asn	p.S414N	ENST00000371998		414	aGc/aAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578541	7578541	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	26	531	0	ENST00000269305.4:c.389T>G	p.Leu130Arg	p.L130R	ENST00000269305	NM_001126112.2	130	cTc/cGc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25380275	25380276	+	missense_variant	Missense_Mutation	DNP	TT	TT	CA			P-0011115-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	21	619	1	ENST00000256078.4:c.182_183delAAinsTG	p.Gln61Leu	p.Q61L	ENST00000256078	NM_033360.2	61	cAA/cTG					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64572117	64572117	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	179	536	1	ENST00000337652.1:c.1537C>T	p.Gln513Ter	p.Q513*	ENST00000337652	NM_130803.2	513	Cag/Tag					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8111514	8111515	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0012005-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			920	149	431	0	ENST00000346208.3:c.1002_1003delGG	p.Asp335ProfsTer16	p.D335Pfs*16	ENST00000346208		334	GGg/g					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7574003	7574003	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs1131691022		P-0010306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			190	390	533	0	ENST00000269305.4:c.1024del	p.Arg342GlufsTer3	p.R342Efs*3	ENST00000269305	NM_001126112.2	342	Cga/ga					NEWRECORD																																																																									
MCL1	0	MSKCC	GRCh37	1	150549855	150549855	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			439	319	328	0	ENST00000369026.2:c.1049G>C	p.Arg350Thr	p.R350T	ENST00000369026	NM_021960.4	350	aGa/aCa					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202131348	202131348	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	78	393	0	ENST00000358485.4:c.316A>G	p.Arg106Gly	p.R106G	ENST00000358485	NM_001080125.1	106	Aga/Gga					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26923216	26923216	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	90	579	0	ENST00000381527.3:c.212G>A	p.Arg71Gln	p.R71Q	ENST00000381527	NM_001260.1	71	cGa/cAa					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2223365	2223365	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	60	304	0	ENST00000326181.6:c.977T>C	p.Ile326Thr	p.I326T	ENST00000326181	NM_032271.2	326	aTc/aCc					NEWRECORD																																																																									
BCL6	0	MSKCC	GRCh37	3	187447607	187447625	+	frameshift_variant	Frame_Shift_Del	DEL	AATAAGAGGCTGGCGGTGT	AATAAGAGGCTGGCGGTGT	-			P-0010306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	92	276	0	ENST00000232014.4:c.568_586del	p.Thr190ProfsTer128	p.T190Pfs*128	ENST00000232014	NM_001130845.1	190	ACACCGCCAGCCTCTTATTcc/cc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259588	89259589	+	missense_variant	Missense_Mutation	DNP	CA	CA	GC			P-0010306-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	76	306	0	ENST00000336596.2:c.732_733delinsGC	p.Cys244_Ser245delinsTrpArg	p.C244_S245delinsWR	ENST00000336596	NM_005233.5	244	tgCAgt/tgGCgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012784-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	154	511	0	ENST00000269305.4:c.473G>C	p.Arg158Pro	p.R158P	ENST00000269305	NM_001126112.2	158	cGc/cCc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	224	473	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	343720	343720	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0011085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	205	973	0	ENST00000262320.3:c.1956-2A>G		p.X652_splice	ENST00000262320	NM_003502.3	652						NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	354408	354408	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	158	931	0	ENST00000262320.3:c.1150G>T	p.Glu384Ter	p.E384*	ENST00000262320	NM_003502.3	384	Gag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29553561	29553561	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011085-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	208	305	1	ENST00000358273.4:c.2110C>A	p.Leu704Met	p.L704M	ENST00000358273	NM_001042492.2	704	Ctg/Atg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0010608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	165	575	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48604788	48604788	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010608-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1128	111	561	0	ENST00000342988.3:c.1610A>G	p.Asp537Gly	p.D537G	ENST00000342988	NM_005359.5	537	gAc/gGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	13	393	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577532	7577532	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014228-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	18	463	0	ENST00000269305.4:c.749C>T	p.Pro250Leu	p.P250L	ENST00000269305	NM_001126112.2	250	cCc/cTc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			295	228	289	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	120	489	0	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266104	41266104	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	214	599	0	ENST00000349496.5:c.101G>A	p.Gly34Glu	p.G34E	ENST00000349496	NM_001904.3	34	gGa/gAa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139410496	139410496	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	309	787	2	ENST00000277541.6:c.1606C>T	p.Pro536Ser	p.P536S	ENST00000277541	NM_017617.3	536	Ccc/Tcc					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99465538	99465538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1094	236	632	0	ENST00000268035.6:c.2363C>A	p.Thr788Asn	p.T788N	ENST00000268035	NM_000875.3	788	aCt/aAt					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716257	52716257	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	214	550	0	ENST00000322088.6:c.701T>G	p.Leu234Arg	p.L234R	ENST00000322088	NM_014225.5	234	cTt/cGt					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178098942	178098950	+	inframe_deletion	In_Frame_Del	DEL	CTCGACTTA	CTCGACTTA	-			P-0013312-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	285	468	0	ENST00000397062.3:c.95_103del	p.Val32_Arg34del	p.V32_R34del	ENST00000397062	NM_006164.4	32	gTAAGTCGAGaa/gaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578508	7578508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	47	450	0	ENST00000269305.4:c.422G>A	p.Cys141Tyr	p.C141Y	ENST00000269305	NM_001126112.2	141	tGc/tAc					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59247958	59247958	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			836	58	447	0	ENST00000371222.2:c.785A>G	p.Asn262Ser	p.N262S	ENST00000371222	NM_002228.3	262	aAc/aGc					NEWRECORD																																																																									
HIST1H3D	0	MSKCC	GRCh37	6	26197342	26197342	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1694	103	948	0	ENST00000356476.2:c.137C>T	p.Thr46Met	p.T46M	ENST00000356476		46	aCg/aTg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29588847	29588847	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			863	60	458	0	ENST00000358273.4:c.4696A>G	p.Ser1566Gly	p.S1566G	ENST00000358273	NM_001042492.2	1566	Agt/Ggt					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554540	63554540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	60	348	0	ENST00000307078.5:c.199G>A	p.Gly67Arg	p.G67R	ENST00000307078	NM_004655.3	67	Ggg/Agg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175349	112175356	+	frameshift_variant	Frame_Shift_Del	DEL	AATTTTCT	AATTTTCT	-			P-0010749-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	36	238	0	ENST00000257430.4:c.4058_4065del	p.Glu1353ValfsTer19	p.E1353Vfs*19	ENST00000257430	NM_000038.5	1353	gAATTTTCT/g					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295242	1295242	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	78	415	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36652129	36652129	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs34916193		P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			727	103	473	1	ENST00000244741.5:c.251G>A	p.Arg84Gln	p.R84Q	ENST00000244741	NM_000389.4	84	cGa/cAa					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29606646	29606646	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147102592		P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	64	626	0	ENST00000389048.3:c.1234C>T	p.Arg412Cys	p.R412C	ENST00000389048	NM_004304.4	412	Cgc/Tgc					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55973911	55973911	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			659	43	389	0	ENST00000263923.4:c.1405G>A	p.Glu469Lys	p.E469K	ENST00000263923	NM_002253.2	469	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578443	7578443	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	200	517	0	ENST00000269305.4:c.487T>C	p.Tyr163His	p.Y163H	ENST00000269305	NM_001126112.2	163	Tac/Cac					NEWRECORD																																																																									
MPL	0	MSKCC	GRCh37	1	43804242	43804242	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1246	75	750	0	ENST00000372470.3:c.242C>T	p.Ser81Phe	p.S81F	ENST00000372470	NM_005373.2	81	tCc/tTc					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88679811	88679811	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	72	564	0	ENST00000360948.2:c.652A>C	p.Asn218His	p.N218H	ENST00000360948	NM_001012338.2	218	Aac/Cac					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041375	42041375	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2086	115	1387	1	ENST00000219905.7:c.5570C>T	p.Ser1857Leu	p.S1857L	ENST00000219905	NM_001164273.1	1857	tCg/tTg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2968280	2968280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1293	86	675	0	ENST00000396946.4:c.1706G>A	p.Gly569Glu	p.G569E	ENST00000396946	NM_032415.4	569	gGa/gAa					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123215312	123215312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1282	85	928	0	ENST00000218089.9:c.2858G>A	p.Arg953Gln	p.R953Q	ENST00000218089	NM_001042749.1	953	cGa/cAa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16258049	16258049	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	132	425	0	ENST00000375759.3:c.5314C>T	p.Pro1772Ser	p.P1772S	ENST00000375759	NM_015001.2	1772	Cca/Tca					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25536837	25536837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	54	510	0	ENST00000264709.3:c.17C>T	p.Ser6Phe	p.S6F	ENST00000264709	NM_175629.2	6	tCc/tTc					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227661383	227661383	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	51	648	1	ENST00000305123.5:c.2072C>T	p.Ser691Phe	p.S691F	ENST00000305123	NM_005544.2	691	tCc/tTc					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37042476	37042476	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	48	743	0	ENST00000231790.2:c.238T>C	p.Phe80Leu	p.F80L	ENST00000231790	NM_000249.3	80	Ttc/Ctc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266182	41266182	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			812	66	586	0	ENST00000349496.5:c.179C>T	p.Ser60Phe	p.S60F	ENST00000349496	NM_001904.3	60	tCc/tTc					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71090535	71090535	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1304	103	772	1	ENST00000318789.4:c.813G>A	p.Met271Ile	p.M271I	ENST00000318789	NM_032682.5	271	atG/atA					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176519339	176519339	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	128	417	1	ENST00000292408.4:c.745C>T	p.Pro249Ser	p.P249S	ENST00000292408	NM_213647.1	249	Ccc/Tcc					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33287604	33287604	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	45	457	0	ENST00000374542.5:c.1493C>T	p.Ser498Phe	p.S498F	ENST00000374542	NM_001141970.1	498	tCc/tTc					NEWRECORD																																																																									
VEGFA	0	MSKCC	GRCh37	6	43748578	43748578	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1602	138	905	2	ENST00000523873.1:c.532C>T	p.Leu178Phe	p.L178F	ENST00000523873		178	Ctc/Ttc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55240687	55240687	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	82	702	1	ENST00000275493.2:c.1931C>T	p.Pro644Leu	p.P644L	ENST00000275493	NM_005228.3	644	cCg/cTg					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116415040	116415040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1023	82	699	0	ENST00000397752.3:c.3134C>T	p.Pro1045Leu	p.P1045L	ENST00000397752	NM_000245.2	1045	cCa/cTa					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145738349	145738349	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	243	626	0	ENST00000428558.2:c.2636C>T	p.Pro879Leu	p.P879L	ENST00000428558	NM_004260.3	879	cCt/cTt					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93650837	93650837	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1107	60	594	0	ENST00000375746.1:c.1763G>A	p.Gly588Glu	p.G588E	ENST00000375746	NM_001174167.1	588	gGa/gAa					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110250169	110250169	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	104	462	0	ENST00000374672.4:c.506G>A	p.Gly169Glu	p.G169E	ENST00000374672	NM_004235.4	169	gGa/gAa					NEWRECORD																																																																									
PPP6C	0	MSKCC	GRCh37	9	127912094	127912094	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1536	103	1039	1	ENST00000373547.4:c.776C>T	p.Pro259Leu	p.P259L	ENST00000373547	NM_002721.4	259	cCt/cTt					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43609010	43609010	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1321	85	983	3	ENST00000355710.3:c.1766G>A	p.Ser589Asn	p.S589N	ENST00000355710	NM_020975.4	589	aGc/aAc					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64136004	64136004	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			755	122	478	0	ENST00000334205.4:c.1265T>G	p.Phe422Cys	p.F422C	ENST00000334205	NM_003942.2	422	tTt/tGt					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64137830	64137830	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1245	77	777	0	ENST00000334205.4:c.1931C>T	p.Ser644Phe	p.S644F	ENST00000334205	NM_003942.2	644	tCc/tTc					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18691226	18691226	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	71	432	0	ENST00000266497.5:c.3337C>G	p.Leu1113Val	p.L1113V	ENST00000266497		1113	Ctc/Gtc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435003	49435003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			572	43	383	0	ENST00000301067.7:c.6550C>T	p.Pro2184Ser	p.P2184S	ENST00000301067	NM_003482.3	2184	Ccc/Tcc					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121437403	121437403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	53	447	0	ENST00000257555.6:c.1741G>A	p.Ala581Thr	p.A581T	ENST00000257555		581	Gcc/Acc					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73345115	73345115	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	33	461	0	ENST00000377767.4:c.1682C>T	p.Ser561Leu	p.S561L	ENST00000377767	NM_014953.3	561	tCa/tTa					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110435223	110435223	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	34	362	1	ENST00000375856.3:c.3178T>C	p.Ser1060Pro	p.S1060P	ENST00000375856	NM_003749.2	1060	Tca/Cca					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061393	38061393	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			930	56	647	0	ENST00000250448.2:c.596G>A	p.Trp199Ter	p.W199*	ENST00000250448	NM_004496.3	199	tGg/tAg					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95562807	95562807	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	66	617	0	ENST00000343455.3:c.4450C>G	p.Pro1484Ala	p.P1484A	ENST00000343455	NM_177438.2	1484	Ccc/Gcc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68849479	68849479	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1212	65	699	0	ENST00000261769.5:c.1382C>T	p.Pro461Leu	p.P461L	ENST00000261769	NM_004360.3	461	cCt/cTt					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89882322	89882322	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1284	107	871	0	ENST00000389301.3:c.152T>C	p.Leu51Pro	p.L51P	ENST00000389301	NM_000135.2	51	cTg/cCg					NEWRECORD																																																																									
CD79B	0	MSKCC	GRCh37	17	62006620	62006620	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1235	105	685	0	ENST00000392795.3:c.659A>C	p.Lys220Thr	p.K220T	ENST00000392795	NM_001039933.1	220	aAg/aCg					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120055	70120055	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			20	17	17	0	ENST00000245479.2:c.1057C>T	p.Pro353Ser	p.P353S	ENST00000245479	NM_000346.3	353	Ccg/Tcg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15271633	15271633	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1727	92	983	0	ENST00000263388.2:c.6806C>T	p.Ser2269Phe	p.S2269F	ENST00000263388	NM_000435.2	2269	tCc/tTc					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15291806	15291806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	73	485	0	ENST00000263388.2:c.2960C>T	p.Thr987Ile	p.T987I	ENST00000263388	NM_000435.2	987	aCc/aTc					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9560998	9560998	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	54	645	0	ENST00000353224.5:c.784G>A	p.Asp262Asn	p.D262N	ENST00000353224	NM_177990.2	262	Gat/Aat					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31376727	31376727	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	51	499	0	ENST00000328111.2:c.722C>T	p.Ala241Val	p.A241V	ENST00000328111	NM_006892.3	241	gCc/gTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40757461	40757461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1088	62	608	2	ENST00000373198.4:c.2837C>T	p.Ser946Phe	p.S946F	ENST00000373198	NM_133170.3	946	tCc/tTc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39922103	39922103	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2318	155	1173	2	ENST00000378444.4:c.4069C>T	p.Pro1357Ser	p.P1357S	ENST00000378444	NM_001123385.1	1357	Cca/Tca					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70345942	70345942	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1530	97	976	0	ENST00000374080.3:c.2479G>A	p.Glu827Lys	p.E827K	ENST00000374080		827	Gaa/Aaa					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123227889	123227889	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	85	686	0	ENST00000218089.9:c.3600G>A	p.Met1200Ile	p.M1200I	ENST00000218089	NM_001042749.1	1200	atG/atA					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97912144	97912209	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ACCACAGCCTTCTAAGAAAAGGAAAAACGACGCAGGATGACAGGAAACATTTGCCACTTACAGCAA	ACCACAGCCTTCTAAGAAAAGGAAAAACGACGCAGGATGACAGGAAACATTTGCCACTTACAGCAA	-			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	94	306	0	ENST00000289081.3:c.682_686+61del		p.X228_splice	ENST00000289081	NM_000136.2	228						NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29683984	29683985	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0012865-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	167	649	2	ENST00000358273.4:c.7747_7748del	p.Arg2583AspfsTer12	p.R2583Dfs*12	ENST00000358273	NM_001042492.2	2582	cAG/c					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0005454-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			89	299	432	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
DDR2	0	MSKCC	GRCh37	1	162746132	162746132	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005454-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			476	470	505	2	ENST00000367921.3:c.2255G>A	p.Arg752His	p.R752H	ENST00000367921	NM_006182.2	752	cGc/cAc					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999269	100999269	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0005454-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1592	297	943	3	ENST00000325455.5:c.533C>T	p.Thr178Met	p.T178M	ENST00000325455	NM_001202474.3	178	aCg/aTg					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999591	100999591	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005454-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			2068	350	1088	0	ENST00000325455.5:c.211G>C	p.Asp71His	p.D71H	ENST00000325455	NM_001202474.3	71	Gac/Cac					NEWRECORD																																																																									
PIK3R2	0	MSKCC	GRCh37	19	18272181	18272181	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0005454-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			36	29	24	0	ENST00000222254.8:c.691C>G	p.Arg231Gly	p.R231G	ENST00000222254	NM_005027.3	231	Cgc/Ggc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	921	898	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0010988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	95	386	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
SMAD4	4089	MSKCC	GRCh37	18	48591919	48591919	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs377767347		P-0010988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			800	78	502	1	ENST00000342988.3:c.1082G>A	p.Arg361His	p.R361H	ENST00000342988	NM_005359.5	361	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577518	7577518	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010988-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	148	482	0	ENST00000269305.4:c.763A>T	p.Ile255Phe	p.I255F	ENST00000269305	NM_001126112.2	255	Atc/Ttc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	18	473	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010804-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	23	580	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	143	597	0	ENST00000269305.4:c.711G>T	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atT					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851545	63851545	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			693	79	565	0	ENST00000279873.7:c.2323C>A	p.His775Asn	p.H775N	ENST00000279873	NM_032199.2	775	Cat/Aat					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102811648	102811648	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			806	85	673	0	ENST00000307046.8:c.536G>T	p.Arg179Met	p.R179M	ENST00000307046	NM_001111285.1	179	aGg/aTg					NEWRECORD																																																																									
HIST1H3G	0	MSKCC	GRCh37	6	26271447	26271447	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014807-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	129	318	0	ENST00000305910.3:c.166C>G	p.Gln56Glu	p.Q56E	ENST00000305910	NM_003534.2	56	Cag/Gag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	567	486	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577046	7577046	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	337	631	1	ENST00000269305.4:c.892G>T	p.Glu298Ter	p.E298*	ENST00000269305	NM_001126112.2	298	Gag/Tag					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042709	42042709	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1081	532	1090	1	ENST00000219905.7:c.6904G>T	p.Glu2302Ter	p.E2302*	ENST00000219905	NM_001164273.1	2302	Gaa/Taa					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8111447	8111447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	156	546	0	ENST00000346208.3:c.933G>T	p.Arg311Ser	p.R311S	ENST00000346208		311	agG/agT					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36938272	36938272	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			892	226	972	2	ENST00000361632.4:c.689C>A	p.Pro230His	p.P230H	ENST00000361632		230	cCc/cAc					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227663263	227663263	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	113	522	0	ENST00000305123.5:c.192C>G	p.Ile64Met	p.I64M	ENST00000305123	NM_005544.2	64	atC/atG					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1253931	1253931	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1218	343	821	0	ENST00000310581.5:c.3311G>T	p.Ser1104Ile	p.S1104I	ENST00000310581	NM_198253.2	1104	aGt/aTt					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	459806	459806	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1989	356	919	2	ENST00000399788.2:c.1289A>T	p.Lys430Met	p.K430M	ENST00000399788	NM_001042603.1	430	aAg/aTg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41961502	41961502	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1522	305	1178	0	ENST00000219905.7:c.410G>A	p.Trp137Ter	p.W137*	ENST00000219905	NM_001164273.1	137	tGg/tAg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15297743	15297743	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			899	210	778	0	ENST00000263388.2:c.1897G>T	p.Val633Phe	p.V633F	ENST00000263388	NM_000435.2	633	Gtc/Ttc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			185	86	452	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041266	47041266	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			226	89	628	0	ENST00000329236.7:c.1459+1G>T		p.X487_splice	ENST00000329236	NM_001204466.1	487						NEWRECORD																																																																									
STK40	0	MSKCC	GRCh37	1	36824424	36824424	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			221	102	459	1	ENST00000373129.3:c.113-1G>T		p.X38_splice	ENST00000373129	NM_032017.1	38						NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156843551	156843551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			368	93	553	0	ENST00000524377.1:c.977G>C	p.Ser326Thr	p.S326T	ENST00000524377	NM_002529.3	326	aGc/aCc					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25967312	25967312	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			334	110	557	0	ENST00000435504.4:c.1894C>T	p.His632Tyr	p.H632Y	ENST00000435504		632	Cat/Tat					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189455570	189455570	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			216	95	455	0	ENST00000264731.3:c.104A>T	p.Tyr35Phe	p.Y35F	ENST00000264731	NM_003722.4	35	tAt/tTt					NEWRECORD																																																																									
PHOX2B	0	MSKCC	GRCh37	4	41748102	41748102	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			37	14	83	1	ENST00000226382.2:c.667G>A	p.Ala223Thr	p.A223T	ENST00000226382	NM_003924.3	223	Gct/Act					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93967910	93967910	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			177	126	642	1	ENST00000369303.4:c.2017G>A	p.Glu673Lys	p.E673K	ENST00000369303	NM_004440.3	673	Gaa/Aaa					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135778144	135778144	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			174	120	508	0	ENST00000298552.3:c.2239A>C	p.Ile747Leu	p.I747L	ENST00000298552	NM_001162426.1	747	Atc/Ctc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1218483	1218483	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			124	173	393	1	ENST00000326873.7:c.358G>T	p.Glu120Ter	p.E120*	ENST00000326873	NM_000455.4	120	Gaa/Taa					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610139	10610139	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010840-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			113	207	561	0	ENST00000171111.5:c.571G>C	p.Ala191Pro	p.A191P	ENST00000171111	NM_203500.1	191	Gct/Cct					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0013585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			228	124	245	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48922000	48922000	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	98	428	1	ENST00000267163.4:c.539+1G>A		p.X180_splice	ENST00000267163	NM_000321.2	180						NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123247516	123247516	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	59	563	0	ENST00000358487.5:c.1975A>G	p.Lys659Glu	p.K659E	ENST00000358487	NM_000141.4	659	Aag/Gag					NEWRECORD																																																																									
SH2D1A	0	MSKCC	GRCh37	X	123480546	123480546	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013585-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			269	67	545	1	ENST00000371139.4:c.54G>T	p.Lys18Asn	p.K18N	ENST00000371139	NM_001114937.2	18	aaG/aaT					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81381472	81381472	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			382	120	460	1	ENST00000222390.5:c.589C>T	p.Arg197Cys	p.R197C	ENST00000222390	NM_000601.4	197	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577570	7577570	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014697-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			297	624	711	2	ENST00000269305.4:c.711G>A	p.Met237Ile	p.M237I	ENST00000269305	NM_001126112.2	237	atG/atA					NEWRECORD																																																																									
FGFR4	0	MSKCC	GRCh37	5	176523672	176523672	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	183	734	0	ENST00000292408.4:c.2083G>T	p.Val695Leu	p.V695L	ENST00000292408	NM_213647.1	695	Gtg/Ttg					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5054563	5054563	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	G			P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	39	143	0	ENST00000381652.3:c.615C>G	p.Ser205Arg	p.S205R	ENST00000381652	NM_004972.3	205	agC/agG					NEWRECORD																																																																									
TGFBR1	7046	MSKCC	GRCh37	9	101911534	101911534	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs111426349		P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	214	472	2	ENST00000374994.4:c.1459C>T	p.Arg487Trp	p.R487W	ENST00000374994	NM_004612.2	487	Cgg/Tgg					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32438063	32438063	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	151	456	0	ENST00000332351.3:c.974C>A	p.Ser325Ter	p.S325*	ENST00000332351	NM_024426.4	325	tCa/tAa					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57863434	57863434	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs147931475		P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			646	392	643	0	ENST00000228682.2:c.1529G>A	p.Arg510Gln	p.R510Q	ENST00000228682	NM_005269.2	510	cGg/cAg					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95562242	95562242	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	157	514	0	ENST00000343455.3:c.5015A>G	p.Lys1672Arg	p.K1672R	ENST00000343455	NM_177438.2	1672	aAa/aGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577563	7577563	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010855-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	114	450	0	ENST00000269305.4:c.718A>G	p.Ser240Gly	p.S240G	ENST00000269305	NM_001126112.2	240	Agt/Ggt					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013108-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			170	119	525	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012405-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	42	449	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			722	40	624	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108175493	108175493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013355-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	70	577	0	ENST00000278616.4:c.5588C>T	p.Ser1863Phe	p.S1863F	ENST00000278616	NM_000051.3	1863	tCt/tTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	18	537	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0013019-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1371	56	736	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37665992	37665992	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	123	316	0	ENST00000447079.4:c.2644C>T	p.Arg882Trp	p.R882W	ENST00000447079	NM_015083.1	882	Cgg/Tgg					NEWRECORD																																																																									
FOXA1	3169	MSKCC	GRCh37	14	38061218	38061235	+	inframe_deletion	In_Frame_Del	DEL	GCCGTTCTCGAACATGTT	GCCGTTCTCGAACATGTT	-			P-0014892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	114	482	0	ENST00000250448.2:c.754_771del	p.Asn252_Gly257del	p.N252_G257del	ENST00000250448	NM_004496.3	252	AACATGTTCGAGAACGGC/-					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118375868	118375868	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			656	128	404	0	ENST00000534358.1:c.9261C>A	p.Asn3087Lys	p.N3087K	ENST00000534358	NM_005933.3	3087	aaC/aaA					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37627916	37627944	+	frameshift_variant	Frame_Shift_Del	DEL	ACTCAAGTATCTGTAACAGCTGCTATTCC	ACTCAAGTATCTGTAACAGCTGCTATTCC	-			P-0014892-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			814	143	466	0	ENST00000447079.4:c.1833_1861del	p.Gln612ProfsTer19	p.Q612Pfs*19	ENST00000447079	NM_015083.1	611	ACTCAAGTATCTGTAACAGCTGCTATTCCa/a					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916726	178916726	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs772110575		P-0012741-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1341	166	942	3	ENST00000263967.3:c.113G>A	p.Arg38His	p.R38H	ENST00000263967	NM_006218.2	38	cGt/cAt					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593610	55593610	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014521-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			493	336	347	0	ENST00000288135.5:c.1676T>G	p.Val559Gly	p.V559G	ENST00000288135	NM_000222.2	559	gTt/gGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	245	634	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151917689	151917689	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010996-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			283	54	166	0	ENST00000262189.6:c.3631C>T	p.Gln1211Ter	p.Q1211*	ENST00000262189	NM_170606.2	1211	Cag/Tag					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212530097	212530097	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			194	401	436	0	ENST00000342788.4:c.1822G>T	p.Ala608Ser	p.A608S	ENST00000342788	NM_005235.2	608	Gct/Tct					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106553065	106553065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014326-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1052	157	806	1	ENST00000369096.4:c.1030G>A	p.Asp344Asn	p.D344N	ENST00000369096	NM_001198.3	344	Gac/Aac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	124	627	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0013496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			721	138	723	2	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150001091	150001091	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			897	94	717	2	ENST00000253339.5:c.2513G>A	p.Arg838His	p.R838H	ENST00000253339		838	cGt/cAt					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44833925	44833925	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013496-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	148	429	0	ENST00000377967.4:c.349C>T	p.Gln117Ter	p.Q117*	ENST00000377967	NM_021140.2	117	Cag/Tag					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591917	48591925	+	inframe_deletion	In_Frame_Del	DEL	TCGCTTTTG	TCGCTTTTG	-			P-0014859-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			301	342	538	0	ENST00000342988.3:c.1081_1089del	p.Arg361_Cys363del	p.R361_C363del	ENST00000342988	NM_005359.5	360	gaTCGCTTTTGt/gat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			639	220	494	0	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481411	140481411	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			579	114	382	1	ENST00000288602.6:c.1397G>T	p.Gly466Val	p.G466V	ENST00000288602	NM_004333.4	466	gGa/gTa					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220691	1220691	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			728	253	569	0	ENST00000326873.7:c.709G>T	p.Asp237Tyr	p.D237Y	ENST00000326873	NM_000455.4	237	Gac/Tac					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108203543	108203543	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			303	89	363	0	ENST00000278616.4:c.7843C>T	p.Gln2615Ter	p.Q2615*	ENST00000278616	NM_000051.3	2615	Cag/Tag					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95570059	95570059	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs146584765		P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			626	90	473	0	ENST00000343455.3:c.3674A>G	p.Tyr1225Cys	p.Y1225C	ENST00000343455	NM_177438.2	1225	tAc/tGc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2226386	2226386	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			793	240	644	0	ENST00000398665.3:c.3866C>A	p.Ala1289Asp	p.A1289D	ENST00000398665	NM_032482.2	1289	gCc/gAc					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157222662	157222662	+	splice_region_variant,intron_variant	Splice_Region	SNP	G	G	A			P-0014990-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			578	74	406	0	ENST00000346085.5:c.1926+3G>A		p.X642_splice	ENST00000346085	NM_020732.3	642						NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	35	287	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67100663	67100663	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			716	108	774	1	ENST00000412916.2:c.361G>A	p.Gly121Ser	p.G121S	ENST00000412916		121	Ggt/Agt					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8111452	8111452	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012903-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			642	86	606	0	ENST00000346208.3:c.938del	p.Ala313GlufsTer42	p.A313Efs*42	ENST00000346208		313	gCa/ga					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8111547	8111565	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TACAAGCTTCACAATGTAA	TACAAGCTTCACAATGTAA	-			P-0014121-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1233	356	553	0	ENST00000346208.3:c.1033_1047+4del		p.X345_splice	ENST00000346208		345						NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89480403	89480403	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006582-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			841	145	368	0	ENST00000336596.2:c.2240T>A	p.Leu747His	p.L747H	ENST00000336596	NM_005233.5	747	cTc/cAc					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30671846	30671846	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0006582-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1391	275	480	1	ENST00000376406.3:c.5114C>T	p.Thr1705Ile	p.T1705I	ENST00000376406	NM_014641.2	1705	aCc/aTc					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11152041	11152041	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0006582-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1017	872	246	0	ENST00000344626.4:c.4229C>A	p.Ser1410Ter	p.S1410*	ENST00000344626	NM_003072.3	1410	tCa/tAa					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66941674	66941674	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0006582-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1381	185	616	0	ENST00000374690.3:c.2319-1G>A		p.X773_splice	ENST00000374690	NM_000044.3	773						NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221983	1221999	+	frameshift_variant	Frame_Shift_Del	DEL	ATCCGGCAGATCCGGCA	ATCCGGCAGATCCGGCA	-			P-0006582-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1852	1391	392	0	ENST00000326873.7:c.898_914del	p.Ile300AlafsTer12	p.I300Afs*12	ENST00000326873	NM_000455.4	300	ATCCGGCAGATCCGGCAg/g					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	76	365	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577106	7577106	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	150	634	3	ENST00000269305.4:c.832C>A	p.Pro278Thr	p.P278T	ENST00000269305	NM_001126112.2	278	Cct/Act					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023954	27023954	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			157	27	59	0	ENST00000324856.7:c.1060C>T	p.Gln354Ter	p.Q354*	ENST00000324856	NM_006015.4	354	Caa/Taa					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6026649	6026649	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	52	541	0	ENST00000265849.7:c.1747G>A	p.Glu583Lys	p.E583K	ENST00000265849	NM_000535.5	583	Gaa/Aaa					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56486568	56486568	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	99	586	0	ENST00000267101.3:c.1147A>C	p.Lys383Gln	p.K383Q	ENST00000267101	NM_001982.3	383	Aag/Cag					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10246414	10246414	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0012341-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	54	457	0	ENST00000340748.4:c.4723C>T	p.Gln1575Ter	p.Q1575*	ENST00000340748		1575	Cag/Tag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	210	346	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	132	364	1	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175600	112175600	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	217	471	0	ENST00000257430.4:c.4312delA	p.Thr1438HisfsTer35	p.T1438Hfs*35	ENST00000257430	NM_000038.5	1437	Aaa/aa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs121913279		P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	119	322	0	ENST00000263967.3:c.3140A>T	p.His1047Leu	p.H1047L	ENST00000263967	NM_006218.2	1047	cAt/cTt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55211097	55211097	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	158	446	1	ENST00000275493.2:c.340G>A	p.Glu114Lys	p.E114K	ENST00000275493	NM_005228.3	114	Gaa/Aaa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151261	112151261	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854568		P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	151	430	0	ENST00000257430.4:c.904C>T	p.Arg302Ter	p.R302*	ENST00000257430	NM_000038.5	302	Cga/Tga					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89350069	89350069	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			943	388	833	2	ENST00000301030.4:c.2881C>T	p.Arg961Cys	p.R961C	ENST00000301030	NM_001256183.1	961	Cgc/Tgc					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18544155	18544155	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	196	424	0	ENST00000266497.5:c.1972G>T	p.Ala658Ser	p.A658S	ENST00000266497		658	Gcc/Tcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578210	7578211	+	missense_variant	Missense_Mutation	DNP	TC	TC	CT			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	540	306	295	ENST00000269305.4:c.638_639delinsAG	p.Arg213Gln	p.R213Q	ENST00000269305	NM_001126112.2	213	cGA/cAG					NEWRECORD																																																																									
CALR	0	MSKCC	GRCh37	19	13054719	13054719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	195	603	2	ENST00000316448.5:c.1246G>A	p.Glu416Lys	p.E416K	ENST00000316448	NM_004343.3	416	Gag/Aag					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46281288	46281288	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	521	629	1	ENST00000371998.3:c.4085T>A	p.Met1362Lys	p.M1362K	ENST00000371998		1362	aTg/aAg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93956675	93956675	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013704-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	285	703	0	ENST00000369303.4:c.2561G>A	p.Arg854His	p.R854H	ENST00000369303	NM_004440.3	854	cGt/cAt					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64574572	64574572	+	splice_acceptor_variant	Splice_Site	SNP	T	T	G			P-0014394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			204	343	506	0	ENST00000337652.1:c.840-2A>C		p.X280_splice	ENST00000337652	NM_130803.2	280						NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57861952	57861952	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	308	381	1	ENST00000228682.2:c.1253G>A	p.Arg418Gln	p.R418Q	ENST00000228682	NM_005269.2	418	cGg/cAg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70361191	70361191	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014394-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1141	691	828	1	ENST00000374080.3:c.6379C>T	p.Pro2127Ser	p.P2127S	ENST00000374080		2127	Ccc/Tcc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	71	429	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153268156	153268156	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	59	497	2	ENST00000281708.4:c.652C>T	p.Gln218Ter	p.Q218*	ENST00000281708	NM_033632.3	218	Caa/Taa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112155043	112155043	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0012708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	137	416	0	ENST00000257430.4:c.1312+2T>C		p.X438_splice	ENST00000257430	NM_000038.5	438						NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2134608	2134608	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			707	49	489	0	ENST00000219476.3:c.4385C>T	p.Thr1462Ile	p.T1462I	ENST00000219476	NM_000548.3	1462	aCc/aTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574002	7574002	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012708-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			896	127	648	0	ENST00000269305.4:c.1025delG	p.Arg342GlnfsTer3	p.R342Qfs*3	ENST00000269305	NM_001126112.2	342	cGa/ca					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16199495	16199495	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	125	691	0	ENST00000375759.3:c.268G>A	p.Gly90Arg	p.G90R	ENST00000375759	NM_015001.2	90	Gga/Aga					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106662	27106662	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	140	598	0	ENST00000324856.7:c.6273G>A	p.Trp2091Ter	p.W2091*	ENST00000324856	NM_006015.4	2091	tgG/tgA					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1619829	1619829	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	201	1128	1	ENST00000344749.5:c.1117G>A	p.Gly373Arg	p.G373R	ENST00000344749	NM_001136139.2	373	Gga/Aga					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15291902	15291902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			734	186	674	0	ENST00000263388.2:c.2864C>T	p.Thr955Ile	p.T955I	ENST00000263388	NM_000435.2	955	aCa/aTa					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20159752	20159752	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	245	619	0	ENST00000379607.5:c.7A>G	p.Lys3Glu	p.K3E	ENST00000379607	NM_001412.3	3	Aag/Gag					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108122714	108122714	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	332	512	0	ENST00000278616.4:c.1760del	p.Gly587ValfsTer3	p.G587Vfs*3	ENST00000278616	NM_000051.3	586	gaG/ga					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80412493	80412493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002464-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			550	519	390	1	ENST00000286548.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000286548	NM_002072.3	183	cGa/cAa					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0002464-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			425	354	292	1	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt					NEWRECORD																																																																									
DAXX	0	MSKCC	GRCh37	6	33289524	33289524	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0002464-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			999	58	427	0	ENST00000374542.5:c.179A>T	p.Lys60Met	p.K60M	ENST00000374542	NM_001141970.1	60	aAg/aTg					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140477834	140477834	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002464-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			648	49	423	2	ENST00000288602.6:c.1474C>A	p.Pro492Thr	p.P492T	ENST00000288602	NM_004333.4	492	Cct/Act					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2225137	2225137	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0002464-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			943	57	509	0	ENST00000326181.6:c.1372G>T	p.Asp458Tyr	p.D458Y	ENST00000326181	NM_032271.2	458	Gac/Tac					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15809056	15809056	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0002464-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			560	31	283	0	ENST00000307771.7:c.42-1G>A		p.X14_splice	ENST00000307771	NM_005089.3	14						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011370-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	434	422	1	ENST00000269305.4:c.824G>A	p.Cys275Tyr	p.C275Y	ENST00000269305	NM_001126112.2	275	tGt/tAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0014905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	28	466	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag					NEWRECORD																																																																									
HIST1H1C	0	MSKCC	GRCh37	6	26056201	26056201	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	145	407	0	ENST00000343677.2:c.456G>C	p.Lys152Asn	p.K152N	ENST00000343677	NM_005319.3	152	aaG/aaC					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56482439	56482449	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	AGGTGGGTAGG	AGGTGGGTAGG	-			P-0014905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	46	594	0	ENST00000267101.3:c.988+1_988+11del		p.X330_splice	ENST00000267101	NM_001982.3	330						NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56494849	56494849	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	50	424	0	ENST00000267101.3:c.3206C>A	p.Ser1069Tyr	p.S1069Y	ENST00000267101	NM_001982.3	1069	tCt/tAt					NEWRECORD																																																																									
SOS1	0	MSKCC	GRCh37	2	39294789	39294789	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			350	93	429	0	ENST00000402219.2:c.193C>G	p.Arg65Gly	p.R65G	ENST00000402219	NM_005633.3	65	Cga/Gga					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041202	47041202	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014905-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1044	122	976	0	ENST00000329236.7:c.1396C>G	p.His466Asp	p.H466D	ENST00000329236	NM_001204466.1	466	Cat/Gat					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011310-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	133	319	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578437	7578437	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs730882001		P-0010953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			786	97	340	0	ENST00000269305.4:c.493C>T	p.Gln165Ter	p.Q165*	ENST00000269305	NM_001126112.2	165	Cag/Tag					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106555083	106555083	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010953-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	38	245	0	ENST00000369096.4:c.2200G>A	p.Asp734Asn	p.D734N	ENST00000369096	NM_001198.3	734	Gac/Aac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	23	567	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577126	7577126	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	36	675	0	ENST00000269305.4:c.812A>T	p.Glu271Val	p.E271V	ENST00000269305	NM_001126112.2	271	gAg/gTg					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128829040	128829042	+	inframe_deletion	In_Frame_Del	DEL	GCT	GCT	-			P-0012733-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			115	12	97	1	ENST00000249373.3:c.67_69delCTG	p.Leu23del	p.L23del	ENST00000249373	NM_005631.4	16	ggGCTg/ggg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			845	44	442	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			664	49	390	0	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153245446	153245446	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1105	77	473	0	ENST00000281708.4:c.1745C>T	p.Ser582Leu	p.S582L	ENST00000281708	NM_033632.3	582	tCg/tTg					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153271193	153271193	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	65	367	0	ENST00000281708.4:c.584+1G>A		p.X195_splice	ENST00000281708	NM_033632.3	195						NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47635555	47635555	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	65	378	0	ENST00000233146.2:c.227A>G	p.Gln76Arg	p.Q76R	ENST00000233146	NM_000251.2	76	cAg/cGg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55594055	55594055	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	77	522	1	ENST00000288135.5:c.1841C>A	p.Ser614Ter	p.S614*	ENST00000288135	NM_000222.2	614	tCa/tAa					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27839736	27839736	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2733	197	1192	0	ENST00000328488.2:c.358A>G	p.Ile120Val	p.I120V	ENST00000328488	NM_003533.2	120	Att/Gtt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3778821	3778821	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	32	376	0	ENST00000262367.5:c.6227C>T	p.Ser2076Leu	p.S2076L	ENST00000262367	NM_004380.2	2076	tCg/tTg					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435869	56435869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	35	263	0	ENST00000407977.2:c.1268C>G	p.Ser423Cys	p.S423C	ENST00000407977		423	tCc/tGc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68846029	68846047	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCTCTGCAGAGTTTCCCTA	TCTCTGCAGAGTTTCCCTA	-			P-0010501-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	112	549	0	ENST00000261769.5:c.1009-9_1018delTCTCTGCAGAGTTTCCCTA		p.X337_splice	ENST00000261769	NM_004360.3	337						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	217	521	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	132	831	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55141026	55141026	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	85	642	0	ENST00000257290.5:c.1672C>T	p.Arg558Cys	p.R558C	ENST00000257290	NM_006206.4	558	Cgc/Tgc					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143003202	143003202	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	119	622	1	ENST00000262992.4:c.2624C>T	p.Ala875Val	p.A875V	ENST00000262992	NM_001101669.1	875	gCg/gTg					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10284548	10284548	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0013461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			467	120	712	2	ENST00000340748.4:c.634C>T	p.Arg212Ter	p.R212*	ENST00000340748		212	Cga/Tga					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720654	89720654	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			111	12	77	0	ENST00000371953.3:c.808del	p.Met270CysfsTer6	p.M270Cfs*6	ENST00000371953	NM_000314.4	269	Aaa/aa					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21549134	21549134	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			728	54	621	1	ENST00000382592.4:c.3142G>T	p.Asp1048Tyr	p.D1048Y	ENST00000382592	NM_014572.2	1048	Gac/Tac					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42798382	42798382	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	39	487	0	ENST00000575354.2:c.4253C>G	p.Ser1418Cys	p.S1418C	ENST00000575354	NM_015125.3	1418	tCc/tGc					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72428531	72428542	+	inframe_deletion	In_Frame_Del	DEL	TGTTGTGCCACT	TGTTGTGCCACT	-			P-0010731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	31	414	0	ENST00000477973.2:c.460_471del	p.Val155_Gln158del	p.V155_Q158del	ENST00000477973	NM_012234.5	154	caAGTGGCACAACAg/cag					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67457390	67457390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0000373-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			218	505	764	2	ENST00000327367.4:c.364G>A	p.Val122Met	p.V122M	ENST00000327367	NM_005902.3	122	Gtg/Atg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			393	75	279	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
ESR1	2099	MSKCC	GRCh37	6	152332832	152332832	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs1057519827		P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			537	91	483	0	ENST00000206249.3:c.1138G>C	p.Glu380Gln	p.E380Q	ENST00000206249	NM_000125.3	380	Gaa/Caa					NEWRECORD																																																																									
TNFRSF14	0	MSKCC	GRCh37	1	2493212	2493212	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	97	562	0	ENST00000355716.4:c.652A>G	p.Thr218Ala	p.T218A	ENST00000355716	NM_003820.2	218	Aca/Gca					NEWRECORD																																																																									
CDKN1B	0	MSKCC	GRCh37	12	12871875	12871875	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			296	85	179	0	ENST00000228872.4:c.592A>G	p.Thr198Ala	p.T198A	ENST00000228872	NM_004064.3	198	Acg/Gcg					NEWRECORD																																																																									
MLL4	0	MSKCC	GRCh37	19	36212420	36212420	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	210	637	0	ENST00000222270.7:c.2171C>T	p.Ala724Val	p.A724V	ENST00000222270	NM_014727.1	724	gCt/gTt					NEWRECORD																																																																									
GNAS	0	MSKCC	GRCh37	20	57485049	57485049	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	77	307	0	ENST00000371085.3:c.883G>C	p.Asp295His	p.D295H	ENST00000371085	NM_000516.4	295	Gat/Cat					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152415471	152415673	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CCTCATCCTCTTTGAGCTTCTCTCTCTCACTCTCTCTCTGCGCATTCAGGAGTGTACACATTTCTGTCCAGCACCCTGAAGTCTCTGGAAGAGAAGGACCATATCCACCGAGTCCTGGACAAGATCACAGACACTTTGATCCACCTGATGGCCAAGGCAGGCCTGACCCTGCAGCAGCAGCACCAGCGGCTGGCCCAGCTCCT	CCTCATCCTCTTTGAGCTTCTCTCTCTCACTCTCTCTCTGCGCATTCAGGAGTGTACACATTTCTGTCCAGCACCCTGAAGTCTCTGGAAGAGAAGGACCATATCCACCGAGTCCTGGACAAGATCACAGACACTTTGATCCACCTGATGGCCAAGGCAGGCCTGACCCTGCAGCAGCAGCACCAGCGGCTGGCCCAGCTCCT	-			P-0014369-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			216	52	158	0	ENST00000206249.3:c.1370-38_1534del		p.X457_splice	ENST00000206249	NM_000125.3	457						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0010791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	35	245	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135798734	135798734	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			460	37	174	0	ENST00000298552.3:c.508+1G>A		p.X170_splice	ENST00000298552	NM_001162426.1	170						NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188223	10188226	+	frameshift_variant	Frame_Shift_Del	DEL	AGGG	AGGG	-			P-0010791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1008	83	429	0	ENST00000256474.2:c.367_370del	p.Gly123HisfsTer35	p.G123Hfs*35	ENST00000256474	NM_000551.3	122	gcAGGG/gc					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95584079	95584081	+	missense_variant	Missense_Mutation	ONP	TTC	TTC	CTG			P-0010791-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	34	235	0	ENST00000343455.3:c.1387_1389delinsCAG	p.Glu463Gln	p.E463Q	ENST00000343455	NM_177438.2	463	GAA/CAG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579401	7579402	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0014637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			242	481	727	1	ENST00000269305.4:c.285_286del	p.Ser96CysfsTer52	p.S96Cfs*52	ENST00000269305	NM_001126112.2	95	tcTTct/tcct					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29120986	29120986	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			421	172	499	0	ENST00000328354.6:c.571C>G	p.Leu191Val	p.L191V	ENST00000328354	NM_007194.3	191	Ctg/Gtg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76890188	76890188	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014637-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	100	567	0	ENST00000373344.5:c.4706A>G	p.Gln1569Arg	p.Q1569R	ENST00000373344	NM_000489.3	1569	cAg/cGg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579420	7579420	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-	rs587783062		P-0015054-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	111	670	2	ENST00000269305.4:c.267del	p.Ser90ProfsTer33	p.S90Pfs*33	ENST00000269305	NM_001126112.2	89	ccC/cc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0012384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	203	655	3	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175770	112175773	+	frameshift_variant	Frame_Shift_Del	DEL	GGAA	GGAA	-			P-0012384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	80	336	1	ENST00000257430.4:c.4479_4482del	p.Glu1494ValfsTer12	p.E1494Vfs*12	ENST00000257430	NM_000038.5	1493	acGGAA/ac					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173531	112173531	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			672	92	517	3	ENST00000257430.4:c.2240C>G	p.Ser747Ter	p.S747*	ENST00000257430	NM_000038.5	747	tCa/tGa					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40497609	40497609	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1603	138	955	3	ENST00000264657.5:c.340C>T	p.Arg114Cys	p.R114C	ENST00000264657	NM_139276.2	114	Cgc/Tgc					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202141601	202141603	+	inframe_deletion	In_Frame_Del	DEL	ATC	ATC	-			P-0012384-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			891	174	557	0	ENST00000358485.4:c.893_895del	p.Ile298del	p.I298del	ENST00000358485	NM_001080125.1	297	ATC/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	40	579	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SH2D1A	0	MSKCC	GRCh37	X	123504136	123504136	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014930-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			502	80	507	0	ENST00000371139.4:c.312G>T	p.Lys104Asn	p.K104N	ENST00000371139	NM_001114937.2	104	aaG/aaT					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			666	227	446	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139411768	139411768	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201768800		P-0014824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1189	295	892	2	ENST00000277541.6:c.1511G>A	p.Arg504His	p.R504H	ENST00000277541	NM_017617.3	504	cGc/cAc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68835596	68835596	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			564	124	378	0	ENST00000261769.5:c.187C>T	p.Arg63Ter	p.R63*	ENST00000261769	NM_004360.3	63	Cga/Tga					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8111526	8111526	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	65	572	0	ENST00000346208.3:c.1012del	p.Cys338AlafsTer17	p.C338Afs*17	ENST00000346208		338	Tgc/gc					NEWRECORD																																																																									
CBFB	0	MSKCC	GRCh37	16	67100603	67100603	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014824-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			562	209	394	2	ENST00000412916.2:c.301A>G	p.Met101Val	p.M101V	ENST00000412916		101	Atg/Gtg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			966	364	472	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt					NEWRECORD																																																																									
GPS2	0	MSKCC	GRCh37	17	7217872	7217875	+	frameshift_variant	Frame_Shift_Del	DEL	CTTC	CTTC	-			P-0011017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1124	332	592	2	ENST00000380728.2:c.136_139delGAAG	p.Glu46AsnfsTer16	p.E46Nfs*16	ENST00000380728		46	GAAGaa/aa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55592150	55592150	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	155	398	0	ENST00000288135.5:c.1474A>G	p.Lys492Glu	p.K492E	ENST00000288135	NM_000222.2	492	Aag/Gag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610330	10610330	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011017-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			747	277	391	0	ENST00000171111.5:c.380G>C	p.Gly127Ala	p.G127A	ENST00000171111	NM_203500.1	127	gGt/gCt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	274	491	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	22	259	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	332	537	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175639	112175639	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913332		P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	348	572	2	ENST00000257430.4:c.4348C>T	p.Arg1450Ter	p.R1450*	ENST00000257430	NM_000038.5	1450	Cga/Tga					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128191	112128191	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs397515734		P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			589	351	559	2	ENST00000257430.4:c.694C>T	p.Arg232Ter	p.R232*	ENST00000257430	NM_000038.5	232	Cga/Tga					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134968251	134968251	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	622	669	1	ENST00000398015.3:c.2764G>A	p.Ala922Thr	p.A922T	ENST00000398015	NM_004441.4	922	Gcc/Acc					NEWRECORD																																																																									
RAB35	0	MSKCC	GRCh37	12	120546223	120546223	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	C			P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	78	629	2	ENST00000229340.5:c.101C>G	p.Ser34Ter	p.S34*	ENST00000229340	NM_006861.6	34	tCa/tGa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88726687	88726687	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	284	554	1	ENST00000360948.2:c.357G>T	p.Gln119His	p.Q119H	ENST00000360948	NM_001012338.2	119	caG/caT					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152382145	152382145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	110	346	0	ENST00000206249.3:c.1255G>A	p.Glu419Lys	p.E419K	ENST00000206249	NM_000125.3	419	Gag/Aag					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5080626	5080626	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	41	587	1	ENST00000381652.3:c.2377G>A	p.Asp793Asn	p.D793N	ENST00000381652	NM_004972.3	793	Gat/Aat					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759984	133759984	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013828-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			816	50	628	0	ENST00000318560.5:c.2307G>C	p.Glu769Asp	p.E769D	ENST00000318560	NM_005157.4	769	gaG/gaC					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			175	841	456	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115700	8115714	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DEL	AGATTAACAGACCCC	AGATTAACAGACCCC	-			P-0011415-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	440	492	0	ENST00000346208.3:c.1048-2_1060del		p.X350_splice	ENST00000346208		350						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	107	374	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154723	112154723	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	161	274	0	ENST00000257430.4:c.994C>T	p.Arg332Ter	p.R332*	ENST00000257430	NM_000038.5	332	Cga/Tga					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30142982	30142982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010951-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	128	458	1	ENST00000389048.3:c.544G>A	p.Glu182Lys	p.E182K	ENST00000389048	NM_004304.4	182	Gaa/Aaa					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66511578	66511578	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	43	227	1	ENST00000358598.2:c.38G>A	p.Arg13His	p.R13H	ENST00000358598	NM_212471.2	13	cGc/cAc					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65339111	65339111	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	87	484	1	ENST00000342505.4:c.425delA	p.Lys142ArgfsTer26	p.K142Rfs*26	ENST00000342505	NM_002227.2	142	aAg/ag					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35867541	35867541	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			218	35	218	0	ENST00000303115.3:c.361delA	p.Ile121Ter	p.I121*	ENST00000303115	NM_002185.3	119	Aaa/aa					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89717672	89717672	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121909219		P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	119	487	0	ENST00000371953.3:c.697C>T	p.Arg233Ter	p.R233*	ENST00000371953	NM_000314.4	233	Cga/Tga					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66931247	66931247	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			134	99	478	2	ENST00000374690.3:c.1889G>A	p.Arg630Gln	p.R630Q	ENST00000374690	NM_000044.3	630	cGg/cAg					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692791	89692791	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	38	246	0	ENST00000371953.3:c.275A>G	p.Asp92Gly	p.D92G	ENST00000371953	NM_000314.4	92	gAc/gGc					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6036958	6036958	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	A	A	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			211	45	461	0	ENST00000265849.7:c.802del	p.Tyr268ThrfsTer39	p.Y268Tfs*39	ENST00000265849	NM_000535.5	268	Tac/ac					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58740439	58740439	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	65	1202	0	ENST00000305921.3:c.1349delT	p.Leu450Ter	p.L450*	ENST00000305921	NM_003620.3	448	aaT/aa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151874013	151874013	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	61	494	1	ENST00000262189.6:c.8525delA	p.Asn2842MetfsTer21	p.N2842Mfs*21	ENST00000262189	NM_170606.2	2842	aAt/at					NEWRECORD																																																																									
MGA	23269	MSKCC	GRCh37	15	42021442	42021442	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-	rs1193719928		P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			544	145	1466	5	ENST00000219905.7:c.3744del	p.Glu1249ArgfsTer42	p.E1249Rfs*42	ENST00000219905	NM_001164273.1	1246	cgA/cg					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16255338	16255338	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200134542		P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	76	525	0	ENST00000375759.3:c.2603C>T	p.Ala868Val	p.A868V	ENST00000375759	NM_015001.2	868	gCg/gTg					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42795378	42795378	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	37	525	0	ENST00000575354.2:c.2462del	p.Gly821GlufsTer103	p.G821Efs*103	ENST00000575354	NM_015125.3	820	Ggg/gg					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30067836	30067836	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			125	40	309	0	ENST00000338641.4:c.1021C>T	p.Arg341Ter	p.R341*	ENST00000338641	NM_000268.3	341	Cga/Tga					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39755427	39755427	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	32	704	1	ENST00000288319.7:c.1338delT	p.Phe446LeufsTer59	p.F446Lfs*59	ENST00000288319	NM_182918.3	446	ttT/tt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16262669	16262669	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138432235		P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	27	354	0	ENST00000375759.3:c.9934C>T	p.Arg3312Cys	p.R3312C	ENST00000375759	NM_015001.2	3312	Cgc/Tgc					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158622516	158622516	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	127	1252	2	ENST00000263640.3:c.983G>T	p.Gly328Val	p.G328V	ENST00000263640	NM_001105.4	328	gGg/gTg					NEWRECORD																																																																									
NFE2L2	0	MSKCC	GRCh37	2	178095828	178095828	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	63	359	0	ENST00000397062.3:c.1503A>G	p.Ile501Met	p.I501M	ENST00000397062	NM_006164.4	501	atA/atG					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190717481	190717481	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	30	241	0	ENST00000441310.2:c.800T>C	p.Val267Ala	p.V267A	ENST00000441310	NM_000534.4	267	gTa/gCa					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37081683	37081683	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	54	431	0	ENST00000231790.2:c.1565G>A	p.Arg522Gln	p.R522Q	ENST00000231790	NM_000249.3	522	cGg/cAg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52668729	52668729	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	64	543	0	ENST00000394830.3:c.1190G>A	p.Arg397Gln	p.R397Q	ENST00000394830	NM_018313.4	397	cGg/cAg					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52696184	52696184	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	90	762	0	ENST00000394830.3:c.493G>T	p.Asp165Tyr	p.D165Y	ENST00000394830	NM_018313.4	165	Gat/Tat					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71247496	71247496	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			277	77	526	0	ENST00000318789.4:c.37G>A	p.Gly13Ser	p.G13S	ENST00000318789	NM_032682.5	13	Ggt/Agt					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131940624	131940624	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			289	45	378	2	ENST00000265335.6:c.2651G>A	p.Arg884His	p.R884H	ENST00000265335		884	cGt/cAt					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157510904	157510904	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	73	460	1	ENST00000346085.5:c.3679C>T	p.Gln1227Ter	p.Q1227*	ENST00000346085	NM_020732.3	1227	Caa/Taa					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508470	106508470	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			95	10	145	0	ENST00000359195.3:c.464C>T	p.Thr155Met	p.T155M	ENST00000359195	NM_002649.2	155	aCg/aTg					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116435769	116435769	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			240	63	632	0	ENST00000397752.3:c.3859G>A	p.Val1287Ile	p.V1287I	ENST00000397752	NM_000245.2	1287	Gta/Ata					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93606436	93606436	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201455170		P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	50	615	0	ENST00000375746.1:c.256G>A	p.Ala86Thr	p.A86T	ENST00000375746	NM_001174167.1	86	Gcc/Acc					NEWRECORD																																																																									
PPP6C	0	MSKCC	GRCh37	9	127915951	127915951	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			446	101	1183	1	ENST00000373547.4:c.530G>A	p.Arg177Gln	p.R177Q	ENST00000373547	NM_002721.4	177	cGa/cAa					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133750290	133750290	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	44	617	2	ENST00000318560.5:c.1121A>G	p.Asn374Ser	p.N374S	ENST00000318560	NM_005157.4	374	aAc/aGc					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104359294	104359294	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	38	562	1	ENST00000369902.3:c.1015C>T	p.Arg339Trp	p.R339W	ENST00000369902	NM_016169.3	339	Cgg/Tgg					NEWRECORD																																																																									
RPS6KA4	0	MSKCC	GRCh37	11	64138137	64138137	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	49	623	3	ENST00000334205.4:c.2060C>T	p.Thr687Met	p.T687M	ENST00000334205	NM_003942.2	687	aCg/aTg					NEWRECORD																																																																									
SMARCD1	0	MSKCC	GRCh37	12	50482302	50482302	+	splice_acceptor_variant	Splice_Site	SNP	A	A	G			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	22	307	0	ENST00000394963.4:c.655-2A>G		p.X219_splice	ENST00000394963	NM_003076.4	219						NEWRECORD																																																																									
MAPK3	0	MSKCC	GRCh37	16	30129462	30129462	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	74	1281	2	ENST00000263025.4:c.566G>A	p.Arg189Gln	p.R189Q	ENST00000263025	NM_002746.2	189	cGg/cAg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67662277	67662277	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			195	38	482	0	ENST00000264010.4:c.1523G>T	p.Arg508Met	p.R508M	ENST00000264010	NM_006565.3	508	aGg/aTg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89348136	89348136	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	61	1957	0	ENST00000301030.4:c.4814T>C	p.Met1605Thr	p.M1605T	ENST00000301030	NM_001256183.1	1605	aTg/aCg					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7982785	7982785	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	54	1056	0	ENST00000319144.4:c.1000C>T	p.Gln334Ter	p.Q334*	ENST00000319144	NM_001139.2	334	Cag/Tag					NEWRECORD																																																																									
STAT5A	0	MSKCC	GRCh37	17	40462667	40462667	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	58	1491	0	ENST00000345506.4:c.2365G>A	p.Ala789Thr	p.A789T	ENST00000345506	NM_003152.3	789	Gcc/Acc					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45422904	45422904	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	76	545	0	ENST00000262160.6:c.224T>C	p.Val75Ala	p.V75A	ENST00000262160	NM_005901.5	75	gTt/gCt					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15271853	15271853	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			136	34	375	0	ENST00000263388.2:c.6586C>A	p.Leu2196Ile	p.L2196I	ENST00000263388	NM_000435.2	2196	Ctc/Atc					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29130576	29130576	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	44	670	0	ENST00000328354.6:c.134C>T	p.Thr45Met	p.T45M	ENST00000328354	NM_007194.3	45	aCg/aTg					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133759781	133759783	+	inframe_deletion	In_Frame_Del	DEL	GAG	GAG	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			85	14	301	0	ENST00000318560.5:c.2111_2113del	p.Glu704del	p.E704del	ENST00000318560	NM_005157.4	702	GAG/-					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27088770	27088770	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	87	589	0	ENST00000324856.7:c.2382del	p.Ser795AlafsTer38	p.S795Afs*38	ENST00000324856	NM_006015.4	793	atG/at					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190682810	190682810	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			126	31	184	0	ENST00000441310.2:c.492delA	p.Lys164AsnfsTer6	p.K164Nfs*6	ENST00000441310	NM_000534.4	162	gcA/gc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105715	27105717	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0012928-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	29	445	0	ENST00000324856.7:c.5334_5336del	p.Glu1780del	p.E1780del	ENST00000324856	NM_006015.4	1776	GAA/-					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	191	374	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267484	198267484	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	128	358	0	ENST00000335508.6:c.1873C>G	p.Arg625Gly	p.R625G	ENST00000335508	NM_012433.2	625	Cgt/Ggt					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8100403	8100403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			784	267	597	1	ENST00000346208.3:c.377C>A	p.Ser126Tyr	p.S126Y	ENST00000346208		126	tCc/tAc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344603	118344604	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	-			P-0012975-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	301	702	0	ENST00000534358.1:c.2730_2731del	p.Arg910SerfsTer9	p.R910Sfs*9	ENST00000534358	NM_005933.3	910	aGG/a					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398281	25398281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011291-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	40	451	0	ENST00000256078.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000256078	NM_033360.2	13	gGc/gAc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			390	97	309	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48936983	48936983	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			994	122	557	0	ENST00000267163.4:c.751C>T	p.Arg251Ter	p.R251*	ENST00000267163	NM_000321.2	251	Cga/Tga					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139390822	139390822	+	missense_variant	Missense_Mutation	SNP	G	G	C	rs61755043		P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	44	543	0	ENST00000277541.6:c.7369C>G	p.Leu2457Val	p.L2457V	ENST00000277541	NM_017617.3	2457	Ctg/Gtg					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68771344	68771344	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	42	354	0	ENST00000261769.5:c.26C>A	p.Ser9Ter	p.S9*	ENST00000261769	NM_004360.3	9	tCg/tAg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178917639	178917639	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	82	403	0	ENST00000263967.3:c.514G>C	p.Glu172Gln	p.E172Q	ENST00000263967	NM_006218.2	172	Gaa/Caa					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38991131	38991131	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	87	548	0	ENST00000357387.3:c.503C>A	p.Ser168Ter	p.S168*	ENST00000357387	NM_152756.3	168	tCa/tAa					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20488398	20488398	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1085	86	741	0	ENST00000346618.3:c.1054C>T	p.Pro352Ser	p.P352S	ENST00000346618	NM_001949.4	352	Cca/Tca					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30682901	30682901	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1092	77	797	0	ENST00000376406.3:c.52G>C	p.Glu18Gln	p.E18Q	ENST00000376406	NM_014641.2	18	Gag/Cag					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32169033	32169033	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	47	711	0	ENST00000375023.3:c.4000G>C	p.Asp1334His	p.D1334H	ENST00000375023	NM_004557.3	1334	Gat/Cat					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151860512	151860512	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1091	109	703	0	ENST00000262189.6:c.10150G>C	p.Glu3384Gln	p.E3384Q	ENST00000262189	NM_170606.2	3384	Gaa/Caa					NEWRECORD																																																																									
CHEK1	0	MSKCC	GRCh37	11	125525174	125525174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			686	41	528	0	ENST00000428830.2:c.1390G>A	p.Asp464Asn	p.D464N	ENST00000428830	NM_001114121.2	464	Gat/Aat					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28609800	28609800	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			787	44	459	0	ENST00000241453.7:c.1429G>C	p.Glu477Gln	p.E477Q	ENST00000241453	NM_004119.2	477	Gag/Cag					NEWRECORD																																																																									
SMAD3	0	MSKCC	GRCh37	15	67477109	67477109	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			821	116	627	0	ENST00000327367.4:c.916G>C	p.Glu306Gln	p.E306Q	ENST00000327367	NM_005902.3	306	Gag/Cag					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	343497	343497	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			627	75	673	0	ENST00000262320.3:c.2177C>G	p.Ser726Cys	p.S726C	ENST00000262320	NM_003502.3	726	tCc/tGc					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	732915	732915	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1244	128	721	1	ENST00000314574.4:c.1342C>T	p.Arg448Trp	p.R448W	ENST00000314574	NM_005433.3	448	Cgg/Tgg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5229510	5229510	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	29	161	0	ENST00000357368.4:c.2341G>A	p.Asp781Asn	p.D781N	ENST00000357368	NM_002850.3	781	Gat/Aat					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937422	76937422	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011524-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	79	694	0	ENST00000373344.5:c.3326C>T	p.Ser1109Leu	p.S1109L	ENST00000373344	NM_000489.3	1109	tCa/tTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	414	563	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9782097	9782097	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1110	177	631	0	ENST00000377346.4:c.2120C>T	p.Pro707Leu	p.P707L	ENST00000377346	NM_005026.3	707	cCc/cTc					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158634716	158634716	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	571	881	0	ENST00000263640.3:c.470T>A	p.Leu157His	p.L157H	ENST00000263640	NM_001105.4	157	cTc/cAc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356247	66356247	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	71	472	1	ENST00000273854.3:c.1250G>A	p.Arg417Gln	p.R417Q	ENST00000273854	NM_004439.5	417	cGg/cAg					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110436057	110436057	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	260	386	0	ENST00000375856.3:c.2344G>A	p.Asp782Asn	p.D782N	ENST00000375856	NM_003749.2	782	Gac/Aac					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573628	48574039	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTGTTACCATACAGAGAACATTGGATGGGAGGCTTCAGGTTAGTCTTATAAGAGTTTTTCTATACCCTCTATGGTGGCAGATTTAAAAACTTGCTACGTTTCCTTTCAAGCTACTACAGGGTAATTTAATTTGTGCTCCATCTCTTCAGATACTGTGCATCCTGTACAAATATGCATTATGGGAATTTCTGGAAGAATATGCAAAAGATAAAATCTTAAAGTTTTTTAATGTTCTACTCAGAAAAATGTTCAATGGAGAAAATTTGGAAAATAAAAATAAAAAGCAGAAAACCCACACTTCGCAAGAACTACCTTTAGCACTTTGGTATTCATTTTTGTAGCCTGTTGTTTTCTTTTTTTTTTTTTTCCTAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTACAGTGGC	GTGTTACCATACAGAGAACATTGGATGGGAGGCTTCAGGTTAGTCTTATAAGAGTTTTTCTATACCCTCTATGGTGGCAGATTTAAAAACTTGCTACGTTTCCTTTCAAGCTACTACAGGGTAATTTAATTTGTGCTCCATCTCTTCAGATACTGTGCATCCTGTACAAATATGCATTATGGGAATTTCTGGAAGAATATGCAAAAGATAAAATCTTAAAGTTTTTTAATGTTCTACTCAGAAAAATGTTCAATGGAGAAAATTTGGAAAATAAAAATAAAAAGCAGAAAACCCACACTTCGCAAGAACTACCTTTAGCACTTTGGTATTCATTTTTGTAGCCTGTTGTTTTCTTTTTTTTTTTTTTCCTAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTACAGTGGC	-			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	84	275	0	ENST00000342988.3:c.215_249+377del		p.X72_splice	ENST00000342988	NM_005359.5	72						NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174929	112174929	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	220	351	0	ENST00000257430.4:c.3638del	p.Ser1213Ter	p.S1213*	ENST00000257430	NM_000038.5	1213	tCa/ta					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175596	112175596	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0011182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			862	351	523	0	ENST00000257430.4:c.4306del	p.Ser1436ValfsTer37	p.S1436Vfs*37	ENST00000257430	NM_000038.5	1435	agA/ag					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	52	258	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	214	929	2	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575077	48575077	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	26	211	0	ENST00000342988.3:c.272del	p.Pro91LeufsTer3	p.P91Lfs*3	ENST00000342988	NM_005359.5	91	Cct/ct					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134644709	134644709	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012855-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			315	43	358	1	ENST00000398015.3:c.110A>G	p.Asn37Ser	p.N37S	ENST00000398015	NM_004441.4	37	aAt/aGt					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21549104	21549104	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012855-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			365	114	490	0	ENST00000382592.4:c.3172C>G	p.Pro1058Ala	p.P1058A	ENST00000382592	NM_014572.2	1058	Cct/Gct					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954220	48954220	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0012855-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			343	164	372	0	ENST00000267163.4:c.1421G>A	p.Ser474Asn	p.S474N	ENST00000267163	NM_000321.2	474	aGc/aAc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41564538	41564538	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012855-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			625	71	560	0	ENST00000263253.7:c.3960G>C	p.Glu1320Asp	p.E1320D	ENST00000263253	NM_001429.3	1320	gaG/gaC					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577145	7577154	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GTAGATTACC	GTAGATTACC	-			P-0012855-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			321	132	562	2	ENST00000269305.4:c.784_793del	p.Gly262TrpfsTer80	p.G262Wfs*80	ENST00000269305	NM_001126112.2	262	GGTAATCTACtg/tg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645406	67645406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012855-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			380	38	363	0	ENST00000264010.4:c.671C>T	p.Ser224Phe	p.S224F	ENST00000264010	NM_006565.3	224	tCt/tTt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11114016	11114571	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGTAAGAGTGCATTTCCTGGCTTTCAAGGCTCTCAGTGCCCACTGGCAGTGACTTCCACCCTGTGTGTTGTGACCGTCTCCTGCCCTGGCTGGGCATCTTGTGGGGCAGGGAACAGCAGGGCCCAGGCCTGCCCGAAGTCGGTGCTTTAGAGCTGTCCTATCCAATAGGGCAGCTTCTGGCGACATGTGACCATTTCCATTTTAAATTAAATCAGTCACATTACATAAAATTTAAGACTCATTTTCTCTTTCACACTGGCTGCATTTCAGGTGCTTGGCATCCCTTATCTGGGAATGGTCTGCCTCATTTGCCCATTTTTTTTTTTTTTTTTTGAAACGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCACTGGTGCAATCTCAGCTCATTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGCCACCACGTCCAGCTAGTTTTTTTATGTTTAGTA	GTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGTAAGAGTGCATTTCCTGGCTTTCAAGGCTCTCAGTGCCCACTGGCAGTGACTTCCACCCTGTGTGTTGTGACCGTCTCCTGCCCTGGCTGGGCATCTTGTGGGGCAGGGAACAGCAGGGCCCAGGCCTGCCCGAAGTCGGTGCTTTAGAGCTGTCCTATCCAATAGGGCAGCTTCTGGCGACATGTGACCATTTCCATTTTAAATTAAATCAGTCACATTACATAAAATTTAAGACTCATTTTCTCTTTCACACTGGCTGCATTTCAGGTGCTTGGCATCCCTTATCTGGGAATGGTCTGCCTCATTTGCCCATTTTTTTTTTTTTTTTTTGAAACGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCACTGGTGCAATCTCAGCTCATTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGCCACCACGTCCAGCTAGTTTTTTTATGTTTAGTA	-			P-0012855-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			369	31	548	0	ENST00000344626.4:c.1945_2001+499del		p.X649_splice	ENST00000344626	NM_003072.3	649						NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55130008	55130008	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012855-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			759	54	614	0	ENST00000257290.5:c.542C>A	p.Thr181Asn	p.T181N	ENST00000257290	NM_006206.4	181	aCc/aAc					NEWRECORD																																																																									
ETV1	0	MSKCC	GRCh37	7	13975523	13975523	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0012855-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			267	28	185	0	ENST00000405192.2:c.366-2A>T		p.X122_splice	ENST00000405192	NM_001163147.1	122						NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0013719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	274	459	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	203	528	1	ENST00000269305.4:c.730G>A	p.Gly244Ser	p.G244S	ENST00000269305	NM_001126112.2	244	Ggc/Agc					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89350198	89350198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1982	129	1213	1	ENST00000301030.4:c.2752G>A	p.Glu918Lys	p.E918K	ENST00000301030	NM_001256183.1	918	Gag/Aag					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9984844	9984844	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0013719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1030	61	562	0	ENST00000330684.3:c.1121A>T	p.Lys374Met	p.K374M	ENST00000330684	NM_001134407.1	374	aAg/aTg					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23641544	23641544	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1376	74	679	0	ENST00000261584.4:c.1931G>C	p.Gly644Ala	p.G644A	ENST00000261584	NM_024675.3	644	gGa/gCa					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56440688	56440688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013719-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1242	85	760	0	ENST00000407977.2:c.530A>G	p.Tyr177Cys	p.Y177C	ENST00000407977		177	tAc/tGc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577539	7577539	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			251	281	543	1	ENST00000269305.4:c.742C>T	p.Arg248Trp	p.R248W	ENST00000269305	NM_001126112.2	248	Cgg/Tgg					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66766450	66766450	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			320	90	265	0	ENST00000374690.3:c.1462C>T	p.Gln488Ter	p.Q488*	ENST00000374690	NM_000044.3	488	Cag/Tag					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117683892	117683892	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			564	130	601	0	ENST00000368508.3:c.3255C>G	p.Phe1085Leu	p.F1085L	ENST00000368508	NM_002944.2	1085	ttC/ttG					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102098222	102098222	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	134	511	0	ENST00000282441.5:c.1186G>A	p.Glu396Lys	p.E396K	ENST00000282441	NM_001130145.2	396	Gag/Aag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720741	89720741	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			46	41	130	0	ENST00000371953.3:c.892C>T	p.Gln298Ter	p.Q298*	ENST00000371953	NM_000314.4	298	Caa/Taa					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227659982	227659982	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	149	567	0	ENST00000305123.5:c.3473G>A	p.Gly1158Glu	p.G1158E	ENST00000305123	NM_005544.2	1158	gGa/gAa					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591127	67591129	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	185	405	0	ENST00000274335.5:c.1721_1723delGAA	p.Arg574del	p.R574del	ENST00000274335		574	AGA/-					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9781912	9781912	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	154	366	0	ENST00000377346.4:c.2049G>T	p.Met683Ile	p.M683I	ENST00000377346	NM_005026.3	683	atG/atT					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16262204	16262204	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			219	42	105	0	ENST00000375759.3:c.9469G>A	p.Glu3157Lys	p.E3157K	ENST00000375759	NM_015001.2	3157	Gag/Aag					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458068	120458068	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	522	676	0	ENST00000256646.2:c.7277C>T	p.Ser2426Leu	p.S2426L	ENST00000256646	NM_024408.3	2426	tCa/tTa					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29436872	29436872	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			841	153	576	0	ENST00000389048.3:c.3721G>C	p.Glu1241Gln	p.E1241Q	ENST00000389048	NM_004304.4	1241	Gag/Cag					NEWRECORD																																																																									
EPCAM	0	MSKCC	GRCh37	2	47612334	47612334	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	366	697	0	ENST00000263735.4:c.888G>C	p.Lys296Asn	p.K296N	ENST00000263735	NM_002354.2	296	aaG/aaC					NEWRECORD																																																																									
REL	0	MSKCC	GRCh37	2	61147730	61147730	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			505	111	378	0	ENST00000295025.8:c.1040G>C	p.Arg347Thr	p.R347T	ENST00000295025	NM_002908.2	347	aGa/aCa					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227660458	227660458	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			459	84	300	0	ENST00000305123.5:c.2997G>C	p.Gln999His	p.Q999H	ENST00000305123	NM_005544.2	999	caG/caC					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66356281	66356281	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	152	504	0	ENST00000273854.3:c.1216G>A	p.Glu406Lys	p.E406K	ENST00000273854	NM_004439.5	406	Gag/Aag					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187539282	187539282	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	158	499	0	ENST00000441802.2:c.8458G>A	p.Glu2820Lys	p.E2820K	ENST00000441802	NM_005245.3	2820	Gaa/Aaa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628788	187628788	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	156	498	0	ENST00000441802.2:c.2194G>A	p.Val732Met	p.V732M	ENST00000441802	NM_005245.3	732	Gtg/Atg					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157527839	157527839	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	125	448	0	ENST00000346085.5:c.5564G>C	p.Arg1855Thr	p.R1855T	ENST00000346085	NM_020732.3	1855	aGa/aCa					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70404456	70404456	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	148	543	0	ENST00000373644.4:c.1970C>A	p.Ala657Glu	p.A657E	ENST00000373644	NM_030625.2	657	gCa/gAa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46242668	46242668	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	113	430	0	ENST00000334344.6:c.1630G>T	p.Glu544Ter	p.E544*	ENST00000334344	NM_152641.2	544	Gaa/Taa					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95572101	95572101	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	167	503	0	ENST00000343455.3:c.3007C>T	p.Arg1003Ter	p.R1003*	ENST00000343455	NM_177438.2	1003	Cga/Tga					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76763940	76763940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	161	786	0	ENST00000373344.5:c.7368G>A	p.Met2456Ile	p.M2456I	ENST00000373344	NM_000489.3	2456	atG/atA					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76854897	76854897	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			695	194	695	0	ENST00000373344.5:c.5939C>G	p.Ser1980Cys	p.S1980C	ENST00000373344	NM_000489.3	1980	tCt/tGt					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56178236	56178236	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013486-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	325	603	0	ENST00000399503.3:c.3209del	p.Thr1070LysfsTer12	p.T1070Kfs*12	ENST00000399503	NM_005921.1	1070	aCa/aa					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0010400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			502	343	476	1	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31386385	31386385	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010400-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	373	512	0	ENST00000328111.2:c.1610G>A	p.Arg537Gln	p.R537Q	ENST00000328111	NM_006892.3	537	cGg/cAg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	269	521	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66509107	66509107	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	145	546	0	ENST00000273854.3:c.220G>T	p.Gly74Ter	p.G74*	ENST00000273854	NM_004439.5	74	Gga/Tga					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857494	9857494	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	96	424	0	ENST00000330684.3:c.3907G>T	p.Asp1303Tyr	p.D1303Y	ENST00000330684	NM_001134407.1	1303	Gac/Tac					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54958040	54958040	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0010089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	670	458	0	ENST00000312783.6:c.566+1G>A		p.X189_splice	ENST00000312783	NM_198436.1	189						NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18715786	18715786	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			102	12	477	0	ENST00000266497.5:c.3617A>G	p.Glu1206Gly	p.E1206G	ENST00000266497		1206	gAa/gGa					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441260	52441260	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			403	165	782	0	ENST00000460680.1:c.510del	p.Phe170LeufsTer17	p.F170Lfs*17	ENST00000460680	NM_004656.3	170	ttT/tt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183733	10183735	+	missense_variant	Missense_Mutation	ONP	TCG	TCG	CCT			P-0014619-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			640	220	1007	1	ENST00000256474.2:c.202_204delinsCCT	p.Ser68Pro	p.S68P	ENST00000256474	NM_000551.3	68	TCG/CCT					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	195	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	107	521	3	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112162891	112162891	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs137854580		P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	145	381	1	ENST00000257430.4:c.1495C>T	p.Arg499Ter	p.R499*	ENST00000257430	NM_000038.5	499	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577543	7577543	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			459	122	504	1	ENST00000269305.4:c.738G>A	p.Met246Ile	p.M246I	ENST00000269305	NM_001126112.2	246	atG/atA					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153250865	153250865	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	83	368	0	ENST00000281708.4:c.1195G>T	p.Asp399Tyr	p.D399Y	ENST00000281708	NM_033632.3	399	Gat/Tat					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175302	112175303	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	CT			P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			258	103	232	0	ENST00000257430.4:c.4011_4012delinsCT	p.Gln1338Ter	p.Q1338*	ENST00000257430	NM_000038.5	1337	ctGCag/ctCTag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175319	112175319	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	104	220	0	ENST00000257430.4:c.4028C>G	p.Ser1343Cys	p.S1343C	ENST00000257430	NM_000038.5	1343	tCt/tGt					NEWRECORD																																																																									
PREX2	0	MSKCC	GRCh37	8	68931794	68931794	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0015068-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			499	98	399	0	ENST00000288368.4:c.224C>G	p.Ser75Ter	p.S75*	ENST00000288368	NM_024870.2	75	tCa/tGa					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			543	372	607	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	459943	459943	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013433-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	99	606	0	ENST00000399788.2:c.1152G>A	p.Met384Ile	p.M384I	ENST00000399788	NM_001042603.1	384	atG/atA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			498	17	894	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577586	7577586	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014339-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			710	39	862	0	ENST00000269305.4:c.695T>G	p.Ile232Ser	p.I232S	ENST00000269305	NM_001126112.2	232	aTc/aGc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0010786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	170	322	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142215931	142215931	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	309	447	0	ENST00000350721.4:c.5662G>A	p.Glu1888Lys	p.E1888K	ENST00000350721	NM_001184.3	1888	Gaa/Aaa					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150016264	150016264	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	391	507	0	ENST00000253339.5:c.442C>T	p.Arg148Ter	p.R148*	ENST00000253339		148	Cga/Tga					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153259089	153259089	+	splice_acceptor_variant	Splice_Site	SNP	C	C	G			P-0010786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			482	251	290	0	ENST00000281708.4:c.727-1G>C		p.X243_splice	ENST00000281708	NM_033632.3	243						NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29912141	29912141	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0010786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			11	25	10	0	ENST00000376809.5:c.862G>T	p.Glu288Ter	p.E288*	ENST00000376809	NM_002116.7	288	Gag/Tag					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508059	106508059	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs142380460		P-0010786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	154	234	0	ENST00000359195.3:c.53G>A	p.Arg18Gln	p.R18Q	ENST00000359195	NM_002649.2	18	cGa/cAa					NEWRECORD																																																																									
B2M	0	MSKCC	GRCh37	15	45007631	45007631	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	212	268	0	ENST00000558401.1:c.78G>C	p.Lys26Asn	p.K26N	ENST00000558401	NM_004048.2	26	aaG/aaC					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20156731	20156731	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			112	83	275	1	ENST00000379607.5:c.26G>T	p.Gly9Val	p.G9V	ENST00000379607	NM_001412.3	9	gGt/gTt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191513	10191515	+	inframe_deletion	In_Frame_Del	DEL	TAG	TAG	-			P-0014205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			302	123	496	0	ENST00000256474.2:c.507_509del	p.Val170del	p.V170del	ENST00000256474	NM_000551.3	169	cTAGtc/ctc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47125797	47125797	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014205-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	76	283	0	ENST00000409792.3:c.5473C>T	p.Gln1825Ter	p.Q1825*	ENST00000409792	NM_014159.6	1825	Caa/Taa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0013912-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	239	496	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178951957	178951957	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1104	195	559	0	ENST00000263967.3:c.3012G>A	p.Met1004Ile	p.M1004I	ENST00000263967	NM_006218.2	1004	atG/atA					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176050364	176050364	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1335	117	553	0	ENST00000367669.3:c.1201C>G	p.Arg401Gly	p.R401G	ENST00000367669	NM_022457.5	401	Cga/Gga					NEWRECORD																																																																									
PDCD1	5133	MSKCC	GRCh37	2	242793386	242793386	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs756100729		P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	256	529	0	ENST00000334409.5:c.691C>T	p.Arg231Ter	p.R231*	ENST00000334409	NM_005018.2	231	Cga/Tga					NEWRECORD																																																																									
FGFR1	0	MSKCC	GRCh37	8	38287283	38287283	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1762	216	633	0	ENST00000425967.3:c.374T>A	p.Val125Glu	p.V125E	ENST00000425967	NM_001174067.1	125	gTg/gAg					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93641094	93641094	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	362	497	0	ENST00000375746.1:c.1440G>C	p.Met480Ile	p.M480I	ENST00000375746	NM_001174167.1	480	atG/atC					NEWRECORD																																																																									
ABL1	0	MSKCC	GRCh37	9	133760322	133760322	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			985	126	443	0	ENST00000318560.5:c.2645C>G	p.Ser882Cys	p.S882C	ENST00000318560	NM_005157.4	882	tCt/tGt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32914464	32914464	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1477	266	1025	0	ENST00000380152.3:c.5972C>G	p.Ala1991Gly	p.A1991G	ENST00000380152		1991	gCt/gGt					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	751762	751762	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	29	402	0	ENST00000314574.4:c.314G>C	p.Arg105Thr	p.R105T	ENST00000314574	NM_005433.3	105	aGa/aCa					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410556	63410556	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1505	81	886	3	ENST00000330258.3:c.2611C>T	p.Arg871Ter	p.R871*	ENST00000330258	NM_152424.3	871	Cga/Tga					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193099326	193099334	+	inframe_deletion	In_Frame_Del	DEL	GAAGACCTG	GAAGACCTG	-			P-0010895-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	115	433	0	ENST00000367435.3:c.260_268del	p.Arg87_Asp90delinsAsn	p.R87_D90delinsN	ENST00000367435	NM_024529.4	87	aGAAGACCTGat/aat					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27101024	27101024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	73	441	0	ENST00000324856.7:c.4306C>T	p.Pro1436Ser	p.P1436S	ENST00000324856	NM_006015.4	1436	Cct/Tct					NEWRECORD																																																																									
MUTYH	0	MSKCC	GRCh37	1	45798497	45798497	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	116	531	1	ENST00000372115.3:c.472C>T	p.Gln158Ter	p.Q158*	ENST00000372115	NM_001048171.1	158	Caa/Taa					NEWRECORD																																																																									
ASXL2	0	MSKCC	GRCh37	2	25991668	25991668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	104	385	0	ENST00000435504.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000435504		192	Cag/Tag					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			740	46	341	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189526221	189526221	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			974	76	553	1	ENST00000264731.3:c.485C>T	p.Ser162Leu	p.S162L	ENST00000264731	NM_003722.4	162	tCa/tTa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106193857	106193857	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	74	458	0	ENST00000380013.4:c.4319G>A	p.Arg1440Gln	p.R1440Q	ENST00000380013	NM_001127208.2	1440	cGg/cAg					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1295242	1295243	+	upstream_gene_variant	5'Flank	DNP	GG	GG	AA			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	29	161	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149441147	149441147	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			666	56	487	0	ENST00000286301.3:c.1765G>A	p.Gly589Arg	p.G589R	ENST00000286301	NM_005211.3	589	Gga/Aga					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32183126	32183126	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			926	83	462	0	ENST00000375023.3:c.1898T>G	p.Leu633Arg	p.L633R	ENST00000375023	NM_004557.3	633	cTg/cGg					NEWRECORD																																																																									
RAC1	0	MSKCC	GRCh37	7	6426892	6426892	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			913	79	436	0	ENST00000356142.4:c.85C>T	p.Pro29Ser	p.P29S	ENST00000356142	NM_018890.3	29	Cct/Tct					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55241677	55241677	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			797	21	402	1	ENST00000275493.2:c.2125G>A	p.Glu709Lys	p.E709K	ENST00000275493	NM_005228.3	709	Gaa/Aaa					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453136	140453137	+	missense_variant	Missense_Mutation	DNP	AC	AC	TT			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			804	71	301	0	ENST00000288602.6:c.1798_1799delGTinsAA	p.Val600Lys	p.V600K	ENST00000288602	NM_004333.4	600	GTg/AAg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8341196	8341196	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	47	335	0	ENST00000356435.5:c.5020C>T	p.Arg1674Cys	p.R1674C	ENST00000356435		1674	Cgc/Tgc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8528755	8528755	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	59	352	0	ENST00000356435.5:c.377C>T	p.Pro126Leu	p.P126L	ENST00000356435		126	cCt/cTt					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93650807	93650807	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	50	360	0	ENST00000375746.1:c.1733G>A	p.Gly578Glu	p.G578E	ENST00000375746	NM_001174167.1	578	gGa/gAa					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98239851	98239851	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			803	67	426	0	ENST00000331920.6:c.1481C>T	p.Ser494Phe	p.S494F	ENST00000331920	NM_000264.3	494	tCc/tTc					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21563098	21563098	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	58	319	0	ENST00000382592.4:c.821C>T	p.Ser274Phe	p.S274F	ENST00000382592	NM_014572.2	274	tCc/tTc					NEWRECORD																																																																									
GREM1	0	MSKCC	GRCh37	15	33022962	33022962	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			997	100	618	0	ENST00000300177.4:c.71G>A	p.Gly24Glu	p.G24E	ENST00000300177	NM_001191322.1	24	gGg/gAg					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729162	66729162	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	49	474	0	ENST00000307102.5:c.370C>T	p.Pro124Ser	p.P124S	ENST00000307102	NM_002755.3	124	Ccg/Tcg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88678406	88678406	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			934	104	596	0	ENST00000360948.2:c.1130C>T	p.Thr377Ile	p.T377I	ENST00000360948	NM_001012338.2	377	aCc/aTc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858016	9858016	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			829	78	544	0	ENST00000330684.3:c.3385C>T	p.His1129Tyr	p.H1129Y	ENST00000330684	NM_001134407.1	1129	Cac/Tac					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9862775	9862775	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	62	459	1	ENST00000330684.3:c.2528G>A	p.Trp843Ter	p.W843*	ENST00000330684	NM_001134407.1	843	tGg/tAg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9892263	9892263	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	68	404	0	ENST00000330684.3:c.2227G>A	p.Glu743Lys	p.E743K	ENST00000330684	NM_001134407.1	743	Gaa/Aaa					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56865793	56865794	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	124	657	1	ENST00000308159.5:c.1125_1126delinsTT	p.Arg376Cys	p.R376C	ENST00000308159	NM_014669.4	375	taCCgt/taTTgt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11121131	11121131	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	59	487	1	ENST00000344626.4:c.2198C>T	p.Ala733Val	p.A733V	ENST00000344626	NM_003072.3	733	gCc/gTc					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41763407	41763407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	77	524	1	ENST00000301178.4:c.2206G>A	p.Gly736Arg	p.G736R	ENST00000301178	NM_021913.4	736	Ggg/Agg					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50905315	50905315	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	95	686	1	ENST00000440232.2:c.523G>T	p.Asp175Tyr	p.D175Y	ENST00000440232	NM_002691.3	175	Gac/Tac					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40735448	40735448	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	70	482	0	ENST00000373198.4:c.3425G>A	p.Arg1142Lys	p.R1142K	ENST00000373198	NM_133170.3	1142	aGg/aAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40735554	40735554	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			424	25	273	0	ENST00000373198.4:c.3319G>A	p.Ala1107Thr	p.A1107T	ENST00000373198	NM_133170.3	1107	Gct/Act					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54945660	54945660	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	16	111	0	ENST00000312783.6:c.910C>T	p.Arg304Trp	p.R304W	ENST00000312783	NM_198436.1	304	Cgg/Tgg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178917490	178917490	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	183	341	0	ENST00000263967.3:c.365G>A	p.Gly122Asp	p.G122D	ENST00000263967	NM_006218.2	122	gGc/gAc					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150005125	150005125	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	49	531	0	ENST00000253339.5:c.1100C>G	p.Thr367Ser	p.T367S	ENST00000253339		367	aCt/aGt					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729875	41729875	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			911	372	756	0	ENST00000242208.4:c.654G>C	p.Trp218Cys	p.W218C	ENST00000242208	NM_002192.2	218	tgG/tgC					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110438375	110438375	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			39	15	34	0	ENST00000375856.3:c.26C>G	p.Pro9Arg	p.P9R	ENST00000375856	NM_003749.2	9	cCg/cGg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67663349	67663349	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	343	611	2	ENST00000264010.4:c.1750G>C	p.Glu584Gln	p.E584Q	ENST00000264010	NM_006565.3	584	Gag/Cag					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41222971	41222971	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			171	2015	750	11	ENST00000357654.3:c.4960del	p.Val1654CysfsTer4	p.V1654Cfs*4	ENST00000357654	NM_007294.3	1654	Gtg/tg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579422	7579434	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCTGGTGCAGG	GGGCTGGTGCAGG	CAC			P-0010758-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			120	824	442	8	ENST00000269305.4:c.253_265delinsGTG	p.Pro85ValfsTer35	p.P85Vfs*35	ENST00000269305	NM_001126112.2	85	CCTGCACCAGCCCcc/GTGcc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010198-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			825	19	341	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	447	384	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174406	112174406	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			205	155	230	1	ENST00000257430.4:c.3115G>T	p.Gly1039Ter	p.G1039*	ENST00000257430	NM_000038.5	1039	Gga/Tga					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139393422	139393422	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	345	424	1	ENST00000277541.6:c.6109G>T	p.Ala2037Ser	p.A2037S	ENST00000277541	NM_017617.3	2037	Gcc/Tcc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49433784	49433784	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			736	594	520	0	ENST00000301067.7:c.7769C>T	p.Ser2590Leu	p.S2590L	ENST00000301067	NM_003482.3	2590	tCg/tTg					NEWRECORD																																																																									
CDK4	0	MSKCC	GRCh37	12	58144713	58144713	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	103	272	0	ENST00000257904.6:c.515C>G	p.Thr172Arg	p.T172R	ENST00000257904	NM_000075.3	172	aCa/aGa					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88420245	88420245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	257	406	0	ENST00000360948.2:c.2441G>A	p.Arg814Gln	p.R814Q	ENST00000360948	NM_001012338.2	814	cGg/cAg					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1612205	1612205	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0011300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	228	333	0	ENST00000344749.5:c.1813+1G>A		p.X605_splice	ENST00000344749	NM_001136139.2	605						NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			620	87	427	10				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			957	140	550	0	ENST00000269571.5:c.929C>A	p.Ser310Tyr	p.S310Y	ENST00000269571		310	tCc/tAc					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185183554	185183554	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			621	78	295	1	ENST00000265026.3:c.1408G>A	p.Glu470Lys	p.E470K	ENST00000265026	NM_004721.4	470	Gaa/Aaa					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143293	30143293	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			672	321	552	0	ENST00000389048.3:c.233C>T	p.Ser78Leu	p.S78L	ENST00000389048	NM_004304.4	78	tCg/tTg					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458911	120458911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			767	110	622	0	ENST00000256646.2:c.6434C>A	p.Ser2145Ter	p.S2145*	ENST00000256646	NM_024408.3	2145	tCa/tAa					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120459305	120459305	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	101	319	0	ENST00000256646.2:c.6040C>G	p.Leu2014Val	p.L2014V	ENST00000256646	NM_024408.3	2014	Ctg/Gtg					NEWRECORD																																																																									
SMYD3	0	MSKCC	GRCh37	1	246490562	246490562	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			480	79	461	0	ENST00000388985.4:c.472G>C	p.Glu158Gln	p.E158Q	ENST00000388985		158	Gaa/Caa					NEWRECORD																																																																									
INPPL1	0	MSKCC	GRCh37	11	71949356	71949356	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			789	132	528	0	ENST00000298229.2:c.3736C>T	p.His1246Tyr	p.H1246Y	ENST00000298229	NM_001567.3	1246	Cac/Tac					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108192065	108192065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			501	89	405	1	ENST00000278616.4:c.6490G>A	p.Glu2164Lys	p.E2164K	ENST00000278616	NM_000051.3	2164	Gag/Aag					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118374309	118374309	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	117	423	0	ENST00000534358.1:c.7702C>T	p.Pro2568Ser	p.P2568S	ENST00000534358	NM_005933.3	2568	Cca/Tca					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49442985	49442985	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			794	143	480	0	ENST00000301067.7:c.3923delT	p.Phe1308SerfsTer22	p.F1308Sfs*22	ENST00000301067	NM_003482.3	1308	tTc/tc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49033739	49033826	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATTAGAGCGATTTCATGATTTGAAAAAAATCTACTTGTAATTCAAAATGAACAGTAAAAATGACTAATTTTTCTTATTCCCACAGTGT	ATTAGAGCGATTTCATGATTTGAAAAAAATCTACTTGTAATTCAAAATGAACAGTAAAAATGACTAATTTTTCTTATTCCCACAGTGT	-			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			45	102	52	0	ENST00000267163.4:c.1961-83_1965del		p.X654_splice	ENST00000267163	NM_000321.2	654						NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3832721	3832721	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			584	122	351	1	ENST00000262367.5:c.1537C>T	p.Gln513Ter	p.Q513*	ENST00000262367	NM_004380.2	513	Caa/Taa					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81892752	81892752	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	63	391	0	ENST00000359376.3:c.463C>G	p.Gln155Glu	p.Q155E	ENST00000359376	NM_002661.3	155	Caa/Gaa					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89357508	89357508	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	160	609	1	ENST00000301030.4:c.310G>A	p.Gly104Arg	p.G104R	ENST00000301030	NM_001256183.1	104	Gga/Aga					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31023771	31023771	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			876	138	528	0	ENST00000375687.4:c.3256G>A	p.Glu1086Lys	p.E1086K	ENST00000375687	NM_015338.5	1086	Gag/Aag					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31024759	31024759	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs143328954		P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	87	487	0	ENST00000375687.4:c.4244G>A	p.Arg1415Gln	p.R1415Q	ENST00000375687	NM_015338.5	1415	cGa/cAa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40735556	40735556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	99	397	0	ENST00000373198.4:c.3317G>A	p.Gly1106Glu	p.G1106E	ENST00000373198	NM_133170.3	1106	gGg/gAg					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44513223	44513223	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	83	266	1	ENST00000291552.4:c.712G>A	p.Gly238Arg	p.G238R	ENST00000291552	NM_006758.2	238	Ggg/Agg					NEWRECORD																																																																									
HIST1H3I	0	MSKCC	GRCh37	6	27839941	27839941	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	83	434	0	ENST00000328488.2:c.153G>C	p.Glu51Asp	p.E51D	ENST00000328488	NM_003533.2	51	gaG/gaC					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971119	21971119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	458	451	0	ENST00000304494.5:c.239G>C	p.Arg80Pro	p.R80P	ENST00000304494	NM_000077.4	80	cGa/cCa					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971119	21971119	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			599	458	451	0	ENST00000304494.5:c.239G>C	p.Arg80Pro	p.R80P	ENST00000304494	NM_000077.4	80	cGa/cCa					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36923421	36923421	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1379	167	591	0	ENST00000358127.4:c.841C>G	p.Leu281Val	p.L281V	ENST00000358127	NM_001280556.1	281	Ctg/Gtg					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98220365	98220365	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			601	113	326	0	ENST00000331920.6:c.3098G>A	p.Ser1033Asn	p.S1033N	ENST00000331920	NM_000264.3	1033	aGc/aAc					NEWRECORD																																																																									
RXRA	6256	MSKCC	GRCh37	9	137328351	137328351	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519958		P-0014470-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1015	189	627	0	ENST00000481739.1:c.1280C>T	p.Ser427Phe	p.S427F	ENST00000481739	NM_002957.4	427	tCc/tTc					NEWRECORD																																																																									
PIK3CB	0	MSKCC	GRCh37	3	138374305	138374305	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1121	60	606	1	ENST00000289153.2:c.3139G>A	p.Glu1047Lys	p.E1047K	ENST00000289153	NM_006219.2	1047	Gag/Aag					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30680556	30680556	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			516	179	434	0	ENST00000376406.3:c.1163C>T	p.Ala388Val	p.A388V	ENST00000376406	NM_014641.2	388	gCt/gTt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151843722	151843722	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	209	407	0	ENST00000262189.6:c.13993G>C	p.Gly4665Arg	p.G4665R	ENST00000262189	NM_170606.2	4665	Ggc/Cgc					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64572156	64572156	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1042	246	702	1	ENST00000337652.1:c.1498C>T	p.Pro500Ser	p.P500S	ENST00000337652	NM_130803.2	500	Ccc/Tcc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579434	7579441	+	frameshift_variant	Frame_Shift_Del	DEL	GGGCCGCC	GGGCCGCC	-			P-0011577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	164	381	0	ENST00000269305.4:c.246_253del	p.Ala83CysfsTer63	p.A83Cfs*63	ENST00000269305	NM_001126112.2	82	ccGGCGGCCCct/ccct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576915	7576916	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0011577-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	48	414	0	ENST00000269305.4:c.930_931del	p.Asn310LysfsTer26	p.N310Kfs*26	ENST00000269305	NM_001126112.2	310	aaCAac/aaac					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012180-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			488	192	338	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012180-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			247	183	252	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012180-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			427	647	561	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa					NEWRECORD																																																																									
AKT2	0	MSKCC	GRCh37	19	40762959	40762959	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012180-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			342	138	347	0	ENST00000392038.2:c.49G>A	p.Glu17Lys	p.E17K	ENST00000392038	NM_001626.4	17	Gaa/Aaa					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37649065	37649065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012180-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			382	383	399	0	ENST00000447079.4:c.2170G>A	p.Val724Met	p.V724M	ENST00000447079	NM_015083.1	724	Gtg/Atg					NEWRECORD																																																																									
ERCC2	0	MSKCC	GRCh37	19	45854924	45854924	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012180-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			631	100	530	1	ENST00000391945.4:c.2246C>T	p.Thr749Met	p.T749M	ENST00000391945	NM_000400.3	749	aCg/aTg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	170	468	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178928079	178928079	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519925		P-0012452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			779	38	422	0	ENST00000263967.3:c.1357G>A	p.Glu453Lys	p.E453K	ENST00000263967	NM_006218.2	453	Gaa/Aaa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142255042	142255042	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	32	194	0	ENST00000350721.4:c.3727G>T	p.Asp1243Tyr	p.D1243Y	ENST00000350721	NM_001184.3	1243	Gat/Tat					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72831972	72831972	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1212	66	836	0	ENST00000268489.5:c.4609A>G	p.Lys1537Glu	p.K1537E	ENST00000268489	NM_006885.3	1537	Aag/Gag					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41522040	41522040	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012452-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	41	426	0	ENST00000263253.7:c.902A>T	p.Asn301Ile	p.N301I	ENST00000263253	NM_001429.3	301	aAc/aTc					NEWRECORD																																																																									
HIST1H2BD	0	MSKCC	GRCh37	6	26158539	26158539	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			499	41	319	0	ENST00000289316.2:c.142C>G	p.Gln48Glu	p.Q48E	ENST00000289316	NM_138720.2	48	Cag/Gag					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102813307	102813307	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	61	613	2	ENST00000307046.8:c.382G>A	p.Asp128Asn	p.D128N	ENST00000307046	NM_001111285.1	128	Gac/Aac					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11170805	11170805	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	23	369	0	ENST00000344626.4:c.4853G>A	p.Arg1618Gln	p.R1618Q	ENST00000344626	NM_003072.3	1618	cGa/cAa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183755	10183757	+	inframe_deletion	In_Frame_Del	DEL	TCT	TCT	-			P-0012253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			443	30	401	0	ENST00000256474.2:c.227_229delTCT	p.Phe76del	p.F76del	ENST00000256474	NM_000551.3	75	aTCTtc/atc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651347	52651347	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	55	670	1	ENST00000394830.3:c.1749A>T	p.Glu583Asp	p.E583D	ENST00000394830	NM_018313.4	583	gaA/gaT					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128850837	128850837	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs138072219		P-0012253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			838	49	527	7	ENST00000249373.3:c.1684C>T	p.Arg562Trp	p.R562W	ENST00000249373	NM_005631.4	562	Cgg/Tgg					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63816898	63816898	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			457	26	266	0	ENST00000279873.7:c.869C>T	p.Ala290Val	p.A290V	ENST00000279873	NM_032199.2	290	gCc/gTc					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44922716	44922717	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0012253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	89	326	0	ENST00000377967.4:c.1577_1578delinsTA	p.Gly526Val	p.G526V	ENST00000377967	NM_021140.2	526	gGG/gTA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578478	7578478	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0001007-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			232	687	378	0	ENST00000269305.4:c.452C>A	p.Pro151His	p.P151H	ENST00000269305	NM_001126112.2	151	cCc/cAc					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95557630	95557630	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0001007-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			264	973	491	0	ENST00000343455.3:c.5437G>A	p.Glu1813Lys	p.E1813K	ENST00000343455	NM_177438.2	1813	Gag/Aag					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716321	52716321	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0001007-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			711	237	421	0	ENST00000322088.6:c.765G>C	p.Lys255Asn	p.K255N	ENST00000322088	NM_014225.5	255	aaG/aaC					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0013794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	71	536	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40730870	40730870	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013794-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	35	572	0	ENST00000373198.4:c.3665A>G	p.His1222Arg	p.H1222R	ENST00000373198	NM_133170.3	1222	cAt/cGt					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149460390	149460390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1080	293	700	1	ENST00000286301.3:c.247C>T	p.Arg83Cys	p.R83C	ENST00000286301	NM_005211.3	83	Cgc/Tgc					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18650566	18650566	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	53	474	1	ENST00000266497.5:c.2777T>A	p.Leu926His	p.L926H	ENST00000266497		926	cTt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			801	259	532	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	300	433	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7976509	7976509	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	324	543	0	ENST00000319144.4:c.1883C>T	p.Thr628Met	p.T628M	ENST00000319144	NM_001139.2	628	aCg/aTg					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46268399	46268399	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2249	132	1203	0	ENST00000371998.3:c.2786G>C	p.Arg929Thr	p.R929T	ENST00000371998		929	aGa/aCa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173657	112173658	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			447	222	486	0	ENST00000257430.4:c.2369_2370del	p.Arg790ThrfsTer8	p.R790Tfs*8	ENST00000257430	NM_000038.5	789	cAG/c					NEWRECORD																																																																									
IRS1	0	MSKCC	GRCh37	2	227660504	227660521	+	inframe_deletion	In_Frame_Del	DEL	CTGGGCACTGCCCGGGTA	CTGGGCACTGCCCGGGTA	-			P-0011468-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	145	325	0	ENST00000305123.5:c.2934_2951del	p.Thr979_Ser984del	p.T979_S984del	ENST00000305123	NM_005544.2	978	ccTACCCGGGCAGTGCCCAGc/ccc					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			662	662	558	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	33	594	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577127	7577127	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1108	98	692	0	ENST00000269305.4:c.811G>C	p.Glu271Gln	p.E271Q	ENST00000269305	NM_001126112.2	271	Gag/Cag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7572963	7572963	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1040	449	772	2	ENST00000269305.4:c.1146del	p.Lys382AsnfsTer40	p.K382Nfs*40	ENST00000269305	NM_001126112.2	382	aaA/aa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164123	47164123	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			624	101	409	0	ENST00000409792.3:c.2003C>T	p.Pro668Leu	p.P668L	ENST00000409792	NM_014159.6	668	cCc/cTc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187530423	187530423	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs138364727		P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			866	166	644	0	ENST00000441802.2:c.10120A>G	p.Ile3374Val	p.I3374V	ENST00000441802	NM_005245.3	3374	Att/Gtt					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858112	9858112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012922-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1396	85	806	2	ENST00000330684.3:c.3289G>A	p.Asp1097Asn	p.D1097N	ENST00000330684	NM_001134407.1	1097	Gac/Aac					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858738	9858738	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149698593		P-0014087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			819	94	500	0	ENST00000330684.3:c.2663C>T	p.Thr888Met	p.T888M	ENST00000330684	NM_001134407.1	888	aCg/aTg					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56489481	56489481	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014087-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			766	78	414	0	ENST00000267101.3:c.1946T>G	p.Ile649Arg	p.I649R	ENST00000267101	NM_001982.3	649	aTa/aGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576852	7576852	+	splice_donor_variant	Splice_Site	SNP	C	C	A	rs11575997		P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			473	244	524	0	ENST00000269305.4:c.993+1G>T		p.X331_splice	ENST00000269305	NM_001126112.2	331						NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21549498	21549498	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			505	56	389	0	ENST00000382592.4:c.2778C>G	p.Ile926Met	p.I926M	ENST00000382592	NM_014572.2	926	atC/atG					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2103365	2103403	+	inframe_deletion	In_Frame_Del	DEL	AGGCGGTCGCGGATCTGTTGCAGCCGGAGCGGCCGCTGG	AGGCGGTCGCGGATCTGTTGCAGCCGGAGCGGCCGCTGG	-			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			721	72	539	0	ENST00000219476.3:c.252_290del	p.Val85_Ala97del	p.V85_A97del	ENST00000219476	NM_000548.3	83	aAGGCGGTCGCGGATCTGTTGCAGCCGGAGCGGCCGCTGGag/aag					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7982769	7982769	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	297	590	3	ENST00000319144.4:c.1016C>A	p.Pro339His	p.P339H	ENST00000319144	NM_001139.2	339	cCc/cAc					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61726032	61726034	+	inframe_deletion	In_Frame_Del	DEL	AGA	AGA	-			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1298	177	462	0	ENST00000401558.2:c.605_607del	p.Phe202del	p.F202del	ENST00000401558	NM_003400.3	202	tTCTca/tca					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66201834	66201834	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			688	53	350	1	ENST00000273854.3:c.2668G>T	p.Ala890Ser	p.A890S	ENST00000273854	NM_004439.5	890	Gcg/Tcg					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56181831	56181831	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			379	189	380	0	ENST00000399503.3:c.4055A>T	p.Gln1352Leu	p.Q1352L	ENST00000399503	NM_005921.1	1352	cAg/cTg					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139398874	139399572	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGTCCAGGGGAAGGCAGTGGCCCAGGAAAAGGGTGTGGCTGTGGGGTCAGGGCCCTGAGCTGGAATGCTGCCTCTACTCCTTGCCTGCGCAGGCCCTGAAGTCCCAGGTCCTCTCGGAACCTCCGTCTCTTTTACCATAAAGTGGGGAGAGTACTGCTTGCCATGGCGCCGGCCGTGAGGGGCAGGGAGGCCGTCGGGGAGGGCCCAGGAGAGTTGCGGGGATTGACCGTGGGCGCCGGGTCTCACTCACCCGCGGACGTCCATGGGGTCCAGCTCCCTCCGCCGCCGCCCACCCTCGCTGCCACCAGGGAGCAGCGAGGCCTTCACCTGGCCCAGCAGGGCGTCAGGTGCGGCCCAGCCCTCGGCGGCACGCTTGATGGGGTGCTTGCGCAGCTCCTCCTCGCGGCCGTAGTAGGGGAAGATCATCTGCTGGCCGTGTGCGTCACGCTTGAAGACCACGTTGGTGTGCAGCACGCGGCTGAGCTCCCGCAGGAAGTGGAAGGAGCTGTTGCGCAGCTGCTCCGGCGGCATCAGCACCACCACCACCAGCGTGCCGGCCGCCAGCCTCTCGGGTACATGCTCCGCACAGTCCAGCCCGTCCCACTCGCACTCCGCGCTGTTGCAGCCCTGGTCGCAGTGCCCGTCGCTGAAGTGGTCCTTGCAGTACTGGTCGTACAGGGGGCTGTGGGGGGCGGGAC	CTGTCCAGGGGAAGGCAGTGGCCCAGGAAAAGGGTGTGGCTGTGGGGTCAGGGCCCTGAGCTGGAATGCTGCCTCTACTCCTTGCCTGCGCAGGCCCTGAAGTCCCAGGTCCTCTCGGAACCTCCGTCTCTTTTACCATAAAGTGGGGAGAGTACTGCTTGCCATGGCGCCGGCCGTGAGGGGCAGGGAGGCCGTCGGGGAGGGCCCAGGAGAGTTGCGGGGATTGACCGTGGGCGCCGGGTCTCACTCACCCGCGGACGTCCATGGGGTCCAGCTCCCTCCGCCGCCGCCCACCCTCGCTGCCACCAGGGAGCAGCGAGGCCTTCACCTGGCCCAGCAGGGCGTCAGGTGCGGCCCAGCCCTCGGCGGCACGCTTGATGGGGTGCTTGCGCAGCTCCTCCTCGCGGCCGTAGTAGGGGAAGATCATCTGCTGGCCGTGTGCGTCACGCTTGAAGACCACGTTGGTGTGCAGCACGCGGCTGAGCTCCCGCAGGAAGTGGAAGGAGCTGTTGCGCAGCTGCTCCGGCGGCATCAGCACCACCACCACCAGCGTGCCGGCCGCCAGCCTCTCGGGTACATGCTCCGCACAGTCCAGCCCGTCCCACTCGCACTCCGCGCTGTTGCAGCCCTGGTCGCAGTGCCCGTCGCTGAAGTGGTCCTTGCAGTACTGGTCGTACAGGGGGCTGTGGGGGGCGGGAC	-			P-0014476-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			22	490	13	0	ENST00000277541.6:c.4587-15_5018+252del		p.X1529_splice	ENST00000277541	NM_017617.3	1529						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	324	482	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578202	7578202	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			650	552	687	0	ENST00000269305.4:c.647T>G	p.Val216Gly	p.V216G	ENST00000269305	NM_001126112.2	216	gTg/gGg					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72427705	72427705	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			689	278	384	0	ENST00000477973.2:c.783T>G	p.Phe262Cys	p.F262C	ENST00000477973	NM_012234.5	262	tTt/tGt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48604707	48604707	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	354	592	0	ENST00000342988.3:c.1529G>A	p.Gly510Glu	p.G510E	ENST00000342988	NM_005359.5	510	gGa/gAa					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48652297	48652297	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010814-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	572	451	0	ENST00000376670.3:c.968G>A	p.Gly323Asp	p.G323D	ENST00000376670	NM_002049.3	323	gGc/gAc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0010690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			928	436	584	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49939920	49939920	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010690-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1316	290	831	0	ENST00000296474.3:c.1123G>C	p.Asp375His	p.D375H	ENST00000296474	NM_002447.2	375	Gac/Cac					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			641	213	461	0	ENST00000206249.3:c.1610A>G	p.Tyr537Cys	p.Y537C	ENST00000206249	NM_000125.3	537	tAt/tGt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			414	173	263	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27092993	27092993	+	stop_gained	Nonsense_Mutation	SNP	T	T	G			P-0013296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	165	601	0	ENST00000324856.7:c.2924T>G	p.Leu975Ter	p.L975*	ENST00000324856	NM_006015.4	975	tTa/tGa					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711892	89711892	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	108	390	0	ENST00000371953.3:c.510T>G	p.Ser170Arg	p.S170R	ENST00000371953	NM_000314.4	170	agT/agG					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10252857	10252857	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			551	202	425	0	ENST00000340748.4:c.3108C>G	p.His1036Gln	p.H1036Q	ENST00000340748		1036	caC/caG					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589586	67589612	+	inframe_deletion	In_Frame_Del	DEL	ATGAATATAACACTCAGTTTCAAGAAA	ATGAATATAACACTCAGTTTCAAGAAA	-			P-0013296-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	41	269	0	ENST00000274335.5:c.1350_1376del	p.His450_Lys459delinsGln	p.H450_K459delinsQ	ENST00000274335		450	cATGAATATAACACTCAGTTTCAAGAAAaa/caa					NEWRECORD																																																																									
HRAS	0	MSKCC	GRCh37	11	534285	534285	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	51	649	1	ENST00000311189.7:c.38G>T	p.Gly13Val	p.G13V	ENST00000311189		13	gGt/gTt					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119144724	119144724	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	73	452	1	ENST00000264033.4:c.737G>A	p.Arg246Gln	p.R246Q	ENST00000264033	NM_005188.3	246	cGa/cAa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339937	70339937	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1388	106	890	1	ENST00000374080.3:c.470C>A	p.Ala157Asp	p.A157D	ENST00000374080		157	gCc/gAc					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716291	52716305	+	inframe_deletion	In_Frame_Del	DEL	GCCCACTCTGCGCCA	GCCCACTCTGCGCCA	-			P-0013458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	130	558	0	ENST00000322088.6:c.736_750del	p.Pro246_Gln250del	p.P246_Q250del	ENST00000322088	NM_014225.5	245	atGCCCACTCTGCGCCAg/atg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207198	1207203	+	splice_donor_variant,coding_sequence_variant	Splice_Site	DEL	AAGAAG	AAGAAG	T			P-0013458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	78	422	0	ENST00000326873.7:c.286_290+1delinsT		p.X96_splice	ENST00000326873	NM_000455.4	96						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578384	7578401	+	inframe_deletion	In_Frame_Del	DEL	GCAGCGCTCATGGTGGGG	GCAGCGCTCATGGTGGGG	-			P-0013856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	106	410	0	ENST00000269305.4:c.529_546del	p.Pro177_Cys182del	p.P177_C182del	ENST00000269305	NM_001126112.2	177	CCCCACCATGAGCGCTGC/-					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175423	112175423	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913329		P-0013856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	113	437	3	ENST00000257430.4:c.4132C>T	p.Gln1378Ter	p.Q1378*	ENST00000257430	NM_000038.5	1378	Cag/Tag					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114912149	114912149	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	157	1025	3	ENST00000543371.1:c.1219C>T	p.Arg407Ter	p.R407*	ENST00000543371	NM_001198531.1	407	Cga/Tga					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142268514	142268514	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013856-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			61	94	291	0	ENST00000350721.4:c.2978G>A	p.Arg993Lys	p.R993K	ENST00000350721	NM_001184.3	993	aGg/aAg					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			470	407	397	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
STK11	6794	MSKCC	GRCh37	19	1221314	1221314	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			247	497	421	1	ENST00000326873.7:c.842del	p.Pro281ArgfsTer6	p.P281Rfs*6	ENST00000326873	NM_000455.4	279	ggC/gg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117609803	117609803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	293	564	0	ENST00000368508.3:c.6896C>T	p.Ser2299Phe	p.S2299F	ENST00000368508	NM_002944.2	2299	tCt/tTt					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372209	55372209	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			55	90	72	0	ENST00000297316.4:c.899T>C	p.Met300Thr	p.M300T	ENST00000297316	NM_022454.3	300	aTg/aCg					NEWRECORD																																																																									
SDHD	0	MSKCC	GRCh37	11	111958616	111958616	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	36	231	0	ENST00000375549.3:c.88C>A	p.His30Asn	p.H30N	ENST00000375549	NM_003002.3	30	Cat/Aat					NEWRECORD																																																																									
MDM2	0	MSKCC	GRCh37	12	69233118	69233118	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	225	422	0	ENST00000462284.1:c.983G>A	p.Cys328Tyr	p.C328Y	ENST00000462284	NM_002392.5	328	tGt/tAt					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5258031	5258031	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	125	360	0	ENST00000357368.4:c.703C>T	p.Arg235Ter	p.R235*	ENST00000357368	NM_002850.3	235	Cga/Tga					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108139269	108139269	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	739	482	1	ENST00000278616.4:c.2772del	p.Arg925GlyfsTer4	p.R925Gfs*4	ENST00000278616	NM_000051.3	924	cGg/cg					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602788	10602790	+	inframe_deletion	In_Frame_Del	DEL	CGT	CGT	-			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	492	408	0	ENST00000171111.5:c.788_790del	p.Tyr263_Val264delinsPhe	p.Y263_V264delinsF	ENST00000171111	NM_203500.1	263	tACGtc/ttc					NEWRECORD																																																																									
INPP4B	0	MSKCC	GRCh37	4	143067144	143067145	+	missense_variant	Missense_Mutation	DNP	CC	CC	AG			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			358	273	351	0	ENST00000262992.4:c.1568_1569delinsCT	p.Arg523Thr	p.R523T	ENST00000262992	NM_001101669.1	523	aGG/aCT					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81350119	81350120	+	missense_variant	Missense_Mutation	DNP	GG	GG	TT			P-0010030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			976	541	484	1	ENST00000222390.5:c.1212_1213delinsAA	p.Gln405Lys	p.Q405K	ENST00000222390	NM_000601.4	404	tcCCaa/tcAAaa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183872	10183872	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			178	34	125	0	ENST00000256474.2:c.340+1G>A		p.X114_splice	ENST00000256474	NM_000551.3	114						NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52643943	52643943	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			342	53	268	1	ENST00000394830.3:c.1953delA	p.Lys651AsnfsTer5	p.K651Nfs*5	ENST00000394830	NM_018313.4	651	aaA/aa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106197444	106197444	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013078-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	135	589	0	ENST00000380013.4:c.5777G>A	p.Arg1926His	p.R1926H	ENST00000380013	NM_001127208.2	1926	cGt/cAt					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30051652	30051652	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			257	132	330	0	ENST00000338641.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000338641	NM_000268.3	196	Cga/Tga					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441219	52441219	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			388	216	437	0	ENST00000460680.1:c.551A>T	p.Asp184Val	p.D184V	ENST00000460680	NM_004656.3	184	gAt/gTt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52584475	52584475	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014196-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			378	252	487	0	ENST00000394830.3:c.4538del	p.Glu1513GlyfsTer34	p.E1513Gfs*34	ENST00000394830	NM_018313.4	1513	gAg/gg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191485	10191485	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	75	281	0	ENST00000256474.2:c.478G>T	p.Glu160Ter	p.E160*	ENST00000256474	NM_000551.3	160	Gag/Tag					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41727877	41727877	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1077	135	501	0	ENST00000301178.4:c.502C>A	p.Pro168Thr	p.P168T	ENST00000301178	NM_021913.4	168	Ccc/Acc					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53247557	53247557	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			533	155	270	0	ENST00000375401.3:c.252C>G	p.Asn84Lys	p.N84K	ENST00000375401	NM_004187.3	84	aaC/aaG					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29106002	29106002	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	18	241	0	ENST00000328354.6:c.838del	p.Leu280Ter	p.L280*	ENST00000328354	NM_007194.3	280	Cta/ta					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44969327	44969327	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0011263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	126	272	1	ENST00000377967.4:c.4009G>T	p.Glu1337Ter	p.E1337*	ENST00000377967	NM_021140.2	1337	Gag/Tag					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061226	38061237	+	inframe_deletion	In_Frame_Del	DEL	CGAACATGTTGC	CGAACATGTTGC	-			P-0010752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	34	416	0	ENST00000250448.2:c.752_763delGCAACATGTTCG	p.Gly251_Phe254del	p.G251_F254del	ENST00000250448	NM_004496.3	251	gGCAACATGTTCGag/gag					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149512425	149512425	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	33	443	0	ENST00000261799.4:c.1015G>C	p.Val339Leu	p.V339L	ENST00000261799	NM_002609.3	339	Gtg/Ctg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108143315	108143315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010752-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	17	471	0	ENST00000278616.4:c.3134G>A	p.Cys1045Tyr	p.C1045Y	ENST00000278616	NM_000051.3	1045	tGc/tAc					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2226860	2226860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014429-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			195	11	169	1	ENST00000398665.3:c.4340C>T	p.Ala1447Val	p.A1447V	ENST00000398665	NM_032482.2	1447	gCg/gTg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0013956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	88	206	1				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453154	140453154	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs121913338		P-0013956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			484	179	446	1	ENST00000288602.6:c.1781A>G	p.Asp594Gly	p.D594G	ENST00000288602	NM_004333.4	594	gAt/gGt					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48947540	48947540	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0013956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			100	143	392	0	ENST00000267163.4:c.1128-1G>C		p.X376_splice	ENST00000267163	NM_000321.2	376						NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729180	66729180	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	247	608	0	ENST00000307102.5:c.388T>A	p.Tyr130Asn	p.Y130N	ENST00000307102	NM_002755.3	130	Tat/Aat					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40362164	40362195	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GACATAAGAAGGGAGGGGCACTCACGAGAATC	GACATAAGAAGGGAGGGGCACTCACGAGAATC	-			P-0013956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			375	211	599	0	ENST00000293328.3:c.1900_1906+25delGATTCTCGTGAGTGCCCCTCCCTTCTTATGTC		p.X634_splice	ENST00000293328	NM_012448.3	634						NEWRECORD																																																																									
POLD1	5424	MSKCC	GRCh37	19	50905494	50905494	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	546	683	1	ENST00000440232.2:c.622C>T	p.Pro208Ser	p.P208S	ENST00000440232	NM_002691.3	208	Ccg/Tcg					NEWRECORD																																																																									
MITF	0	MSKCC	GRCh37	3	70014325	70014325	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013956-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			663	343	907	0	ENST00000352241.4:c.1489G>C	p.Val497Leu	p.V497L	ENST00000352241	NM_198159.2	497	Gtg/Ctg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67660529	67660529	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			237	27	500	0	ENST00000264010.4:c.1429C>T	p.His477Tyr	p.H477Y	ENST00000264010	NM_006565.3	477	Cat/Tat					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68853186	68853193	+	stop_gained,frameshift_variant	Nonsense_Mutation	DEL	TCGGATTT	TCGGATTT	-			P-0011590-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	66	460	0	ENST00000261769.5:c.1569_1576del	p.Tyr523Ter	p.Y523*	ENST00000261769	NM_004360.3	523	taTCGGATTTgg/tagg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178917478	178917478	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	A			P-0011101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			266	66	248	0	ENST00000263967.3:c.353G>A	p.Gly118Asp	p.G118D	ENST00000263967	NM_006218.2	118	gGt/gAt					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66727451	66727451	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			765	29	616	0	ENST00000307102.5:c.167A>C	p.Gln56Pro	p.Q56P	ENST00000307102	NM_002755.3	56	cAg/cCg					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247366	153247366	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs866987936		P-0011101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	53	389	0	ENST00000281708.4:c.1436G>A	p.Arg479Gln	p.R479Q	ENST00000281708	NM_033632.3	479	cGa/cAa					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52716323	52716323	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	61	561	2	ENST00000322088.6:c.767C>T	p.Ser256Phe	p.S256F	ENST00000322088	NM_014225.5	256	tCc/tTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577141	7577141	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			725	208	685	3	ENST00000269305.4:c.797G>T	p.Gly266Val	p.G266V	ENST00000269305	NM_001126112.2	266	gGa/gTa					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21557569	21557569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	77	711	2	ENST00000382592.4:c.2276G>A	p.Arg759Gln	p.R759Q	ENST00000382592	NM_014572.2	759	cGg/cAg					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828504	72828504	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1131	165	1086	3	ENST00000268489.5:c.8077C>T	p.Arg2693Ter	p.R2693*	ENST00000268489	NM_006885.3	2693	Cga/Tga					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442569	52442569	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			709	172	389	1	ENST00000460680.1:c.176G>A	p.Arg59Gln	p.R59Q	ENST00000460680	NM_004656.3	59	cGg/cAg					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40367558	40367561	+	coding_sequence_variant,5_prime_UTR_variant	Frame_Shift_Del	DEL	CATG	CATG	-			P-0014576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			12	4	17	0	ENST00000397332.2:c.-1_3delCATG		p.*1fs*	ENST00000397332	NM_001033082.2	1						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577137	7577138	+	missense_variant	Missense_Mutation	DNP	CC	CC	GG			P-0014576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			192	484	575	1	ENST00000269305.4:c.800_801inv	p.Arg267Pro	p.R267P	ENST00000269305	NM_001126112.2	267	cGG/cCC					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176638900	176638900	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014576-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1089	267	552	0	ENST00000439151.2:c.3500G>A	p.Arg1167His	p.R1167H	ENST00000439151	NM_022455.4	1167	cGc/cAc					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143293	30143293	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	43	340	0	ENST00000389048.3:c.233C>G	p.Ser78Trp	p.S78W	ENST00000389048	NM_004304.4	78	tCg/tGg					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76939718	76939718	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010316-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	35	364	1	ENST00000373344.5:c.1030T>C	p.Ser344Pro	p.S344P	ENST00000373344	NM_000489.3	344	Tcc/Ccc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0012116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	165	411	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577498	7577498	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0012116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	285	500	0	ENST00000269305.4:c.782+1G>T		p.X261_splice	ENST00000269305	NM_001126112.2	261						NEWRECORD																																																																									
HIST3H3	0	MSKCC	GRCh37	1	228612923	228612923	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012116-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	249	845	1	ENST00000366696.1:c.104G>T	p.Gly35Val	p.G35V	ENST00000366696	NM_003493.2	35	gGc/gTc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105553	27105553	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			745	105	425	1	ENST00000324856.7:c.5164C>T	p.Arg1722Ter	p.R1722*	ENST00000324856	NM_006015.4	1722	Cga/Tga					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68853327	68853327	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	T	T	-			P-0014927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			445	153	505	0	ENST00000261769.5:c.1710del	p.Asn570LysfsTer14	p.N570Kfs*14	ENST00000261769	NM_004360.3	570	aaT/aa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178928066	178928086	+	protein_altering_variant	In_Frame_Del	DEL	ACCTCATGGATTAGAAGATTT	ACCTCATGGATTAGAAGATTT	CCC			P-0014927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1101	73	533	1	ENST00000263967.3:c.1344_1364delinsCCC	p.His450_Leu455del	p.H450_L455del	ENST00000263967	NM_006218.2	448	gtACCTCATGGATTAGAAGATTTg/gtCCCg					NEWRECORD																																																																									
SMO	0	MSKCC	GRCh37	7	128851498	128851498	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014927-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			630	124	532	0	ENST00000249373.3:c.1823A>G	p.Asn608Ser	p.N608S	ENST00000249373	NM_005631.4	608	aAt/aGt					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183725	10183725	+	stop_gained	Nonsense_Mutation	SNP	C	C	A	rs5030826		P-0013234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	121	410	1	ENST00000256474.2:c.194C>A	p.Ser65Ter	p.S65*	ENST00000256474	NM_000551.3	65	tCg/tAg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47144909	47144909	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	153	459	0	ENST00000409792.3:c.4844T>C	p.Ile1615Thr	p.I1615T	ENST00000409792	NM_014159.6	1615	aTa/aCa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945452	151945452	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs76704065		P-0013234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			348	50	363	0	ENST00000262189.6:c.2067G>T	p.Met689Ile	p.M689I	ENST00000262189	NM_170606.2	689	atG/atT					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18473949	18473949	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	159	460	0	ENST00000266497.5:c.1191T>A	p.His397Gln	p.H397Q	ENST00000266497		397	caT/caA					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52668670	52668670	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0013234-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			417	223	638	0	ENST00000394830.3:c.1249del	p.Tyr417ThrfsTer21	p.Y417Tfs*21	ENST00000394830	NM_018313.4	417	Tac/ac					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952090	178952090	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			599	457	432	0	ENST00000263967.3:c.3145G>C	p.Gly1049Arg	p.G1049R	ENST00000263967	NM_006218.2	1049	Ggt/Cgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011098-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	472	348	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175246	112175246	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			438	210	403	0	ENST00000257430.4:c.3956del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1319	Cct/ct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578260	7578260	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			883	340	788	0	ENST00000269305.4:c.589G>A	p.Val197Met	p.V197M	ENST00000269305	NM_001126112.2	197	Gtg/Atg					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41729465	41729465	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012847-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1351	137	1243	1	ENST00000242208.4:c.1064C>T	p.Pro355Leu	p.P355L	ENST00000242208	NM_002192.2	355	cCg/cTg					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921444	39921444	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs199538037		P-0014062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	10	231	0	ENST00000378444.4:c.4376A>G	p.Asn1459Ser	p.N1459S	ENST00000378444	NM_001123385.1	1459	aAt/aGt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			633	127	322	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602646	10602646	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	99	410	0	ENST00000171111.5:c.932A>G	p.His311Arg	p.H311R	ENST00000171111	NM_203500.1	311	cAc/cGc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1221302	1221302	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	173	449	0	ENST00000326873.7:c.827del	p.Gly276AlafsTer11	p.G276Afs*11	ENST00000326873	NM_000455.4	275	ccG/cc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039389	47039389	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	162	276	0	ENST00000329236.7:c.781del	p.Gln261ArgfsTer4	p.Q261Rfs*4	ENST00000329236	NM_001204466.1	261	Cag/ag					NEWRECORD																																																																									
CTNNB1	1499	MSKCC	GRCh37	3	41266124	41266124	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913412		P-0013732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1018	169	717	0	ENST00000349496.5:c.121A>G	p.Thr41Ala	p.T41A	ENST00000349496	NM_001904.3	41	Acc/Gcc					NEWRECORD																																																																									
SMARCD1	0	MSKCC	GRCh37	12	50479963	50479963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	204	849	0	ENST00000394963.4:c.197G>A	p.Gly66Asp	p.G66D	ENST00000394963	NM_003076.4	66	gGc/gAc					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26828873	26828873	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			694	118	588	0	ENST00000381527.3:c.95A>T	p.Tyr32Phe	p.Y32F	ENST00000381527	NM_001260.1	32	tAt/tTt					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41730140	41730140	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1461	273	1173	0	ENST00000242208.4:c.389G>A	p.Gly130Glu	p.G130E	ENST00000242208	NM_002192.2	130	gGa/gAa					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90965912	90965912	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013732-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	87	315	0	ENST00000265433.3:c.1405del	p.Asp469MetfsTer15	p.D469Mfs*15	ENST00000265433	NM_002485.4	469	Gat/at					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0014423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			644	169	516	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	124	628	0	ENST00000269305.4:c.584T>C	p.Ile195Thr	p.I195T	ENST00000269305	NM_001126112.2	195	aTc/aCc					NEWRECORD																																																																									
BCL2L11	0	MSKCC	GRCh37	2	111921786	111921786	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			683	50	384	1	ENST00000393256.3:c.575G>A	p.Arg192His	p.R192H	ENST00000393256	NM_006538.4	192	cGc/cAc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591901	48591901	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			575	35	397	0	ENST00000342988.3:c.1064A>T	p.Asp355Val	p.D355V	ENST00000342988	NM_005359.5	355	gAc/gTc					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249149	55249149	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014423-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			867	137	707	0	ENST00000275493.2:c.2447A>G	p.Asn816Ser	p.N816S	ENST00000275493	NM_005228.3	816	aAc/aGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	687	558	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PTEN	5728	MSKCC	GRCh37	10	89690819	89690820	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0013352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	141	326	0	ENST00000371953.3:c.227_228del	p.Tyr76Ter	p.Y76*	ENST00000371953	NM_000314.4	76	TAt/t					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692902	89692902	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	168	381	0	ENST00000371953.3:c.386G>A	p.Gly129Glu	p.G129E	ENST00000371953	NM_000314.4	129	gGa/gAa					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65305391	65305391	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	39	836	0	ENST00000342505.4:c.2737G>C	p.Glu913Gln	p.E913Q	ENST00000342505	NM_002227.2	913	Gag/Cag					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952149	178952149	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	150	385	1	ENST00000263967.3:c.3204C>A	p.Asn1068Lys	p.N1068K	ENST00000263967	NM_006218.2	1068	aaC/aaA					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31372612	31372612	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			611	288	712	1	ENST00000328111.2:c.253C>T	p.Pro85Ser	p.P85S	ENST00000328111	NM_006892.3	85	Cca/Tca					NEWRECORD																																																																									
MSH2	0	MSKCC	GRCh37	2	47657007	47657008	+	frameshift_variant	Frame_Shift_Del	DEL	AC	AC	-			P-0013352-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			791	290	731	0	ENST00000233146.2:c.1204_1205del	p.Gln402ArgfsTer14	p.Q402Rfs*14	ENST00000233146	NM_000251.2	401	ttACaa/ttaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			192	38	428	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56478854	56478854	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs1057519893		P-0013153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	52	849	0	ENST00000267101.3:c.310G>A	p.Val104Met	p.V104M	ENST00000267101	NM_001982.3	104	Gtg/Atg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508823	106508823	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	39	443	0	ENST00000359195.3:c.817C>T	p.Arg273Cys	p.R273C	ENST00000359195	NM_002649.2	273	Cgc/Tgc					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66729115	66729115	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	38	627	0	ENST00000307102.5:c.323G>T	p.Arg108Leu	p.R108L	ENST00000307102	NM_002755.3	108	cGg/cTg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48573492	48573496	+	frameshift_variant	Frame_Shift_Del	DEL	CATAG	CATAG	-			P-0013153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			213	44	609	0	ENST00000342988.3:c.76_80del	p.His26ThrfsTer6	p.H26Tfs*6	ENST00000342988	NM_005359.5	26	CATAGa/a					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			925	219	619	1	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38512383	38512383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	110	296	0	ENST00000254066.5:c.1294C>T	p.Arg432Trp	p.R432W	ENST00000254066	NM_000964.3	432	Cgg/Tgg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174884	112174884	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0012110-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	176	329	1	ENST00000257430.4:c.3593C>G	p.Ser1198Ter	p.S1198*	ENST00000257430	NM_000038.5	1198	tCa/tGa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696644	47696644	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			665	17	502	0	ENST00000347630.2:c.304T>G	p.Phe102Val	p.F102V	ENST00000347630	NM_001007230.1	102	Ttc/Gtc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578475	7578475	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			566	457	641	2	ENST00000269305.4:c.455del	p.Pro152ArgfsTer18	p.P152Rfs*18	ENST00000269305	NM_001126112.2	152	cCg/cg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28919595	28919595	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	214	504	0	ENST00000282397.4:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000282397	NM_002019.4	781	cGa/cAa					NEWRECORD																																																																									
PGR	0	MSKCC	GRCh37	11	100999029	100999029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			516	83	440	1	ENST00000325455.5:c.773C>T	p.Pro258Leu	p.P258L	ENST00000325455	NM_001202474.3	258	cCg/cTg					NEWRECORD																																																																									
RECQL	0	MSKCC	GRCh37	12	21624370	21624370	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			536	67	317	0	ENST00000421138.2:c.1659G>C	p.Gln553His	p.Q553H	ENST00000421138		553	caG/caC					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46215251	46215263	+	frameshift_variant	Frame_Shift_Del	DEL	CTGATAGAGACTT	CTGATAGAGACTT	-			P-0014504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			281	57	273	0	ENST00000334344.6:c.687_699delTGATAGAGACTTC	p.Asp230LeufsTer58	p.D230Lfs*58	ENST00000334344	NM_152641.2	229	aCTGATAGAGACTTc/ac					NEWRECORD																																																																									
CD79B	0	MSKCC	GRCh37	17	62009575	62009575	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs114330958		P-0014504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			808	194	572	1	ENST00000392795.3:c.47C>T	p.Ala16Val	p.A16V	ENST00000392795	NM_001039933.1	16	gCg/gTg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41100999	41100999	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	113	398	0	ENST00000373198.4:c.1357C>A	p.Arg453Ser	p.R453S	ENST00000373198	NM_133170.3	453	Cgc/Agc					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370762	55370762	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014504-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			520	120	491	0	ENST00000297316.4:c.64G>A	p.Ala22Thr	p.A22T	ENST00000297316	NM_022454.3	22	Gcg/Acg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52442557	52442557	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			546	216	377	0	ENST00000460680.1:c.188C>G	p.Ser63Cys	p.S63C	ENST00000460680	NM_004656.3	63	tCt/tGt					NEWRECORD																																																																									
HIST1H3G	0	MSKCC	GRCh37	6	26271503	26271503	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1725	155	914	0	ENST00000305910.3:c.110A>T	p.Lys37Met	p.K37M	ENST00000305910	NM_003534.2	37	aAg/aTg					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21994296	21994296	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201877069		P-0011397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	108	391	1	ENST00000361570.3:c.158G>A	p.Arg53Gln	p.R53Q	ENST00000361570	NM_058195.3	53	cGg/cAg					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21994296	21994296	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201877069		P-0011397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	108	391	1	ENST00000361570.3:c.158G>A	p.Arg53Gln	p.R53Q	ENST00000361570	NM_058195.3	53	cGg/cAg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5214706	5214706	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011397-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	71	501	0	ENST00000357368.4:c.4360G>A	p.Gly1454Ser	p.G1454S	ENST00000357368	NM_002850.3	1454	Ggc/Agc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577082	7577082	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1114	100	698	0	ENST00000269305.4:c.856G>A	p.Glu286Lys	p.E286K	ENST00000269305	NM_001126112.2	286	Gaa/Aaa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46230571	46230571	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			490	40	418	1	ENST00000334344.6:c.820C>T	p.Arg274Ter	p.R274*	ENST00000334344	NM_152641.2	274	Cga/Tga					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	87	501	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	87	501	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971108	21971108	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			589	87	501	0	ENST00000304494.5:c.250G>A	p.Asp84Asn	p.D84N	ENST00000304494	NM_000077.4	84	Gac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574004	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AA			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			946	120	713	3	ENST00000269305.4:c.1023_1024delCCinsTT	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	341	ttCCga/ttTTga					NEWRECORD																																																																									
MYCN	0	MSKCC	GRCh37	2	16086133	16086133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			790	106	591	1	ENST00000281043.3:c.1309G>A	p.Glu437Lys	p.E437K	ENST00000281043	NM_005378.4	437	Gag/Aag					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94124437	94124437	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			532	57	466	0	ENST00000369303.4:c.146C>T	p.Ser49Phe	p.S49F	ENST00000369303	NM_004440.3	49	tCc/tTc					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145737160	145737160	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			733	225	629	0	ENST00000428558.2:c.3406G>A	p.Glu1136Lys	p.E1136K	ENST00000428558	NM_004260.3	1136	Gag/Aag					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41566478	41566478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	77	477	0	ENST00000263253.7:c.4355C>T	p.Pro1452Leu	p.P1452L	ENST00000263253	NM_001429.3	1452	cCt/cTt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27099042	27099043	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			932	82	610	0	ENST00000324856.7:c.3458_3459delinsTT	p.Ser1153Phe	p.S1153F	ENST00000324856	NM_006015.4	1153	tCC/tTT					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65303739	65303739	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			740	102	551	0	ENST00000342505.4:c.3016G>A	p.Ala1006Thr	p.A1006T	ENST00000342505	NM_002227.2	1006	Gca/Aca					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114917796	114917796	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	75	385	0	ENST00000543371.1:c.1286G>A	p.Arg429Lys	p.R429K	ENST00000543371	NM_001198531.1	429	aGg/aAg					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64572520	64572521	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			828	71	518	2	ENST00000337652.1:c.1350_1351delinsTT	p.Arg451Cys	p.R451C	ENST00000337652	NM_130803.2	450	ggCCgt/ggTTgt					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25368395	25368395	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			462	64	337	0	ENST00000256078.4:c.550A>T	p.Lys184Ter	p.K184*	ENST00000256078	NM_033360.2	184	Aaa/Taa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46211623	46211623	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			447	53	391	0	ENST00000334344.6:c.589C>T	p.Pro197Ser	p.P197S	ENST00000334344	NM_152641.2	197	Cct/Tct					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46254583	46254583	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			600	79	411	0	ENST00000334344.6:c.4774-1G>A		p.X1592_splice	ENST00000334344	NM_152641.2	1592						NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49448705	49448705	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			673	68	442	0	ENST00000301067.7:c.154C>T	p.Gln52Ter	p.Q52*	ENST00000301067	NM_003482.3	52	Cag/Tag					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112940024	112940024	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1193	143	691	0	ENST00000351677.2:c.1676C>T	p.Pro559Leu	p.P559L	ENST00000351677	NM_002834.3	559	cCt/cTt					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21563317	21563318	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1013	102	850	1	ENST00000382592.4:c.601_602delinsTT	p.Pro201Phe	p.P201F	ENST00000382592	NM_014572.2	201	CCc/TTc					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29004277	29004277	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			609	37	430	0	ENST00000282397.4:c.1016G>A	p.Arg339Gln	p.R339Q	ENST00000282397	NM_002019.4	339	cGa/cAa					NEWRECORD																																																																									
KNSTRN	0	MSKCC	GRCh37	15	40675107	40675108	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			954	51	758	3	ENST00000249776.8:c.71_72delinsTT	p.Ser24Phe	p.S24F	ENST00000249776	NM_033286.3	24	tCC/tTT					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9923397	9923397	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			715	79	586	0	ENST00000330684.3:c.1890G>A	p.Met630Ile	p.M630I	ENST00000330684	NM_001134407.1	630	atG/atA					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72828585	72828585	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			975	94	704	0	ENST00000268489.5:c.7996C>T	p.Pro2666Ser	p.P2666S	ENST00000268489	NM_006885.3	2666	Ccg/Tcg					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89347656	89347656	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			786	105	567	0	ENST00000301030.4:c.5294C>T	p.Ser1765Phe	p.S1765F	ENST00000301030	NM_001256183.1	1765	tCc/tTc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15975487	15975488	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	70	585	1	ENST00000268712.3:c.3866_3867delinsAA	p.Arg1289Lys	p.R1289K	ENST00000268712	NM_006311.3	1289	aGG/aAA					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40483533	40483533	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			756	72	480	0	ENST00000264657.5:c.1066C>T	p.Pro356Ser	p.P356S	ENST00000264657	NM_139276.2	356	Cct/Tct					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41245937	41245937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			805	103	578	0	ENST00000357654.3:c.1611C>G	p.Asn537Lys	p.N537K	ENST00000357654	NM_007294.3	537	aaC/aaG					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15350513	15350514	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	101	630	2	ENST00000263377.2:c.3401_3402delinsTT	p.Pro1134Leu	p.P1134L	ENST00000263377	NM_058243.2	1134	cCC/cTT					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50905476	50905476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			921	124	798	1	ENST00000440232.2:c.604C>T	p.His202Tyr	p.H202Y	ENST00000440232	NM_002691.3	202	Cac/Tac					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215610505	215610505	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			633	55	507	0	ENST00000260947.4:c.1751T>C	p.Met584Thr	p.M584T	ENST00000260947	NM_000465.2	584	aTg/aCg					NEWRECORD																																																																									
TOP1	0	MSKCC	GRCh37	20	39729875	39729875	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			655	66	468	0	ENST00000361337.2:c.1190C>T	p.Pro397Leu	p.P397L	ENST00000361337	NM_003286.2	397	cCa/cTa					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46267922	46267922	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			761	71	584	0	ENST00000371998.3:c.2683C>T	p.Gln895Ter	p.Q895*	ENST00000371998		895	Cag/Tag					NEWRECORD																																																																									
U2AF1	0	MSKCC	GRCh37	21	44514810	44514811	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			811	70	479	1	ENST00000291552.4:c.436_437delinsTT	p.Pro146Phe	p.P146F	ENST00000291552	NM_006758.2	146	CCc/TTc					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30032760	30032761	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	63	375	1	ENST00000338641.4:c.135_136delinsTT	p.Leu46Phe	p.L46F	ENST00000338641	NM_000268.3	45	gaCCtc/gaTTtc					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37090032	37090032	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			741	83	608	1	ENST00000231790.2:c.1921C>T	p.Leu641Phe	p.L641F	ENST00000231790	NM_000249.3	641	Ctt/Ttt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165275	47165275	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			404	55	347	0	ENST00000409792.3:c.851C>T	p.Ser284Phe	p.S284F	ENST00000409792	NM_014159.6	284	tCc/tTc					NEWRECORD																																																																									
FOXP1	0	MSKCC	GRCh37	3	71021803	71021803	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			338	44	313	0	ENST00000318789.4:c.1555C>T	p.Leu519Phe	p.L519F	ENST00000318789	NM_032682.5	519	Ctt/Ttt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66280044	66280044	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			442	41	336	1	ENST00000273854.3:c.1645G>A	p.Gly549Ser	p.G549S	ENST00000273854	NM_004439.5	549	Ggt/Agt					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106196927	106196927	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			341	30	317	0	ENST00000380013.4:c.5260G>A	p.Gly1754Ser	p.G1754S	ENST00000380013	NM_001127208.2	1754	Ggt/Agt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628329	187628329	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			836	92	619	1	ENST00000441802.2:c.2653C>T	p.Arg885Ter	p.R885*	ENST00000441802	NM_005245.3	885	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112177610	112177611	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			412	34	376	1	ENST00000257430.4:c.6319_6320delinsAA	p.Gly2107Asn	p.G2107N	ENST00000257430	NM_000038.5	2107	GGt/AAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112178484	112178485	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			470	40	418	2	ENST00000257430.4:c.7193_7194delinsTT	p.Ser2398Phe	p.S2398F	ENST00000257430	NM_000038.5	2398	tCC/tTT					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180055997	180055997	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			887	78	662	0	ENST00000261937.6:c.988A>T	p.Asn330Tyr	p.N330Y	ENST00000261937	NM_182925.4	330	Aat/Tat					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	111995806	111995806	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			674	75	461	0	ENST00000368678.4:c.1292C>T	p.Ala431Val	p.A431V	ENST00000368678		431	gCc/gTc					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117725482	117725482	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			651	83	535	1	ENST00000368508.3:c.399G>A	p.Trp133Ter	p.W133*	ENST00000368508	NM_002944.2	133	tgG/tgA					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157511227	157511228	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			791	61	602	2	ENST00000346085.5:c.3745_3746delinsAT	p.Pro1249Met	p.P1249M	ENST00000346085	NM_020732.3	1249	CCg/ATg					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162622210	162622210	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			635	64	426	1	ENST00000366898.1:c.487A>T	p.Arg163Trp	p.R163W	ENST00000366898	NM_004562.2	163	Agg/Tgg					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2959074	2959074	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			955	115	579	1	ENST00000396946.4:c.2442G>A	p.Trp814Ter	p.W814*	ENST00000396946	NM_032415.4	814	tgG/tgA					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151848086	151848086	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			602	73	408	0	ENST00000262189.6:c.12673C>G	p.Arg4225Gly	p.R4225G	ENST00000262189	NM_170606.2	4225	Cga/Gga					NEWRECORD																																																																									
PREX2	0	MSKCC	GRCh37	8	68934283	68934283	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	66	591	0	ENST00000288368.4:c.349C>T	p.Arg117Cys	p.R117C	ENST00000288368	NM_024870.2	117	Cgt/Tgt					NEWRECORD																																																																									
NBN	0	MSKCC	GRCh37	8	90993658	90993659	+	stop_gained	Nonsense_Mutation	DNP	GG	GG	AT			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			689	72	458	0	ENST00000265433.3:c.264_265delinsAT	p.Arg89Ter	p.R89*	ENST00000265433	NM_002485.4	88	tcCCga/tcATga					NEWRECORD																																																																									
RAD21	0	MSKCC	GRCh37	8	117869539	117869539	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			610	107	471	0	ENST00000297338.2:c.655A>T	p.Asn219Tyr	p.N219Y	ENST00000297338	NM_006265.2	219	Aat/Tat					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8389296	8389296	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			753	107	672	0	ENST00000356435.5:c.4322G>A	p.Arg1441Lys	p.R1441K	ENST00000356435		1441	aGa/aAa					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47039404	47039404	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			383	171	304	0	ENST00000329236.7:c.796C>T	p.Arg266Cys	p.R266C	ENST00000329236	NM_001204466.1	266	Cgc/Tgc					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	406292	406293	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0014993-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			891	83	698	0	ENST00000399788.2:c.4148_4149delinsTT	p.Ser1383Phe	p.S1383F	ENST00000399788	NM_001042603.1	1383	tCC/tTT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577139	7577139	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs55832599		P-0015015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			286	8	909	0	ENST00000269305.4:c.799C>T	p.Arg267Trp	p.R267W	ENST00000269305	NM_001126112.2	267	Cgg/Tgg					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16097825	16097825	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs73281920		P-0015015-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			225	12	771	2	ENST00000268712.3:c.59A>C	p.Tyr20Ser	p.Y20S	ENST00000268712	NM_006311.3	20	tAt/tCt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267483	198267483	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			292	93	439	1	ENST00000335508.6:c.1874G>A	p.Arg625His	p.R625H	ENST00000335508	NM_012433.2	625	cGt/cAt					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7143000	7143000	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			754	134	464	0	ENST00000302850.5:c.2369C>T	p.Thr790Met	p.T790M	ENST00000302850	NM_000208.2	790	aCg/aTg					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114900986	114900986	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			782	50	1112	0	ENST00000543371.1:c.596C>G	p.Pro199Arg	p.P199R	ENST00000543371	NM_001198531.1	199	cCc/cGc					NEWRECORD																																																																									
CBL	0	MSKCC	GRCh37	11	119148885	119148887	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0013271-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	139	332	0	ENST00000264033.4:c.1105_1107del	p.Glu369del	p.E369del	ENST00000264033	NM_005188.3	369	GAA/-					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			243	78	259	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49418643	49418643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			618	281	570	0	ENST00000301067.7:c.15871G>A	p.Glu5291Lys	p.E5291K	ENST00000301067	NM_003482.3	5291	Gag/Aag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49445901	49445901	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1018	203	941	0	ENST00000301067.7:c.1565C>T	p.Pro522Leu	p.P522L	ENST00000301067	NM_003482.3	522	cCa/cTa					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121435289	121435289	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			670	150	529	1	ENST00000257555.6:c.1322C>T	p.Thr441Met	p.T441M	ENST00000257555		441	aCg/aTg					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7166390	7166390	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			295	310	551	0	ENST00000302850.5:c.1636G>C	p.Asp546His	p.D546H	ENST00000302850	NM_000208.2	546	Gac/Cac					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25471057	25471057	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014523-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			742	167	545	0	ENST00000264709.3:c.704del	p.Glu235GlyfsTer81	p.E235Gfs*81	ENST00000264709	NM_175629.2	235	gAg/gg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0010372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	128	399	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0010372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			401	38	231	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578394	7578394	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	133	283	0	ENST00000269305.4:c.536A>G	p.His179Arg	p.H179R	ENST00000269305	NM_001126112.2	179	cAt/cGt					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12038893	12038893	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	179	415	0	ENST00000396373.4:c.1186A>G	p.Arg396Gly	p.R396G	ENST00000396373	NM_001987.4	396	Aga/Gga					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89468354	89468354	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010372-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	63	262	0	ENST00000336596.2:c.1889-1G>A		p.X630_splice	ENST00000336596	NM_005233.5	630						NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16256846	16256846	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			555	44	650	1	ENST00000375759.3:c.4111C>T	p.Arg1371Ter	p.R1371*	ENST00000375759	NM_015001.2	1371	Cga/Tga					NEWRECORD																																																																									
ACVR1	0	MSKCC	GRCh37	2	158626907	158626907	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	91	1055	0	ENST00000263640.3:c.763G>T	p.Val255Leu	p.V255L	ENST00000263640	NM_001105.4	255	Gtg/Ttg					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430756	181430756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			706	122	614	3	ENST00000325404.1:c.608G>T	p.Ser203Ile	p.S203I	ENST00000325404	NM_003106.3	203	aGc/aTc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66230830	66230830	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	35	850	0	ENST00000273854.3:c.2141C>T	p.Thr714Ile	p.T714I	ENST00000273854	NM_004439.5	714	aCt/aTt					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508556	106508556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			253	64	259	0	ENST00000359195.3:c.550C>A	p.Arg184Ser	p.R184S	ENST00000359195	NM_002649.2	184	Cgc/Agc					NEWRECORD																																																																									
FANCC	0	MSKCC	GRCh37	9	97912288	97912288	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	163	684	1	ENST00000289081.3:c.603G>T	p.Glu201Asp	p.E201D	ENST00000289081	NM_000136.2	201	gaG/gaT					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18435600	18435600	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	94	649	0	ENST00000266497.5:c.585T>A	p.Ser195Arg	p.S195R	ENST00000266497		195	agT/agA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398282	25398282	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913535		P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	99	635	1	ENST00000256078.4:c.37G>T	p.Gly13Cys	p.G13C	ENST00000256078	NM_033360.2	13	Ggc/Tgc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49054172	49054172	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			517	46	561	0	ENST00000267163.4:c.2752G>A	p.Asp918Asn	p.D918N	ENST00000267163	NM_000321.2	918	Gat/Aat					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72829448	72829448	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			945	179	1077	0	ENST00000268489.5:c.7133C>G	p.Thr2378Ser	p.T2378S	ENST00000268489	NM_006885.3	2378	aCc/aGc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29509596	29509596	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	82	736	0	ENST00000358273.4:c.801G>A	p.Trp267Ter	p.W267*	ENST00000358273	NM_001042492.2	267	tgG/tgA					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47429011	47429011	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			843	80	922	0	ENST00000377045.4:c.1374C>A	p.Ser458Arg	p.S458R	ENST00000377045	NM_001654.4	458	agC/agA					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410884	63410884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	180	1002	0	ENST00000330258.3:c.2283G>T	p.Lys761Asn	p.K761N	ENST00000330258	NM_152424.3	761	aaG/aaT					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412221	63412221	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	197	1067	0	ENST00000330258.3:c.946G>C	p.Val316Leu	p.V316L	ENST00000330258	NM_152424.3	316	Gtg/Ctg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578406	7578406	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012287-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			451	94	478	0	ENST00000269305.4:c.524del	p.Arg175ProfsTer72	p.R175Pfs*72	ENST00000269305	NM_001126112.2	175	cGc/cc					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16258625	16258630	+	stop_gained	Nonsense_Mutation	ONP	GAGGAG	GAGGAG	TAGGAA			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			430	29	300	0	ENST00000375759.3:c.5890_5895delinsTAGGAA	p.Glu1964Ter	p.E1964*	ENST00000375759	NM_015001.2	1964	GAGGAG/TAGGAA					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61720134	61720134	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			957	55	638	0	ENST00000401558.2:c.1300G>C	p.Glu434Gln	p.E434Q	ENST00000401558	NM_003400.3	434	Gag/Cag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47139454	47139454	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1152	63	736	0	ENST00000409792.3:c.5133G>C	p.Lys1711Asn	p.K1711N	ENST00000409792	NM_014159.6	1711	aaG/aaC					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138665358	138665358	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	49	552	0	ENST00000330315.3:c.207G>C	p.Glu69Asp	p.E69D	ENST00000330315	NM_023067.3	69	gaG/gaC					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120855	94120855	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1347	113	750	0	ENST00000369303.4:c.196A>C	p.Thr66Pro	p.T66P	ENST00000369303	NM_004440.3	66	Acc/Ccc					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	112035575	112035575	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	73	652	0	ENST00000368678.4:c.319G>C	p.Glu107Gln	p.E107Q	ENST00000368678		107	Gaa/Caa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2956955	2956955	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			578	74	392	1	ENST00000396946.4:c.2672G>T	p.Arg891Leu	p.R891L	ENST00000396946	NM_032415.4	891	cGa/cTa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8460538	8460538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	38	441	0	ENST00000356435.5:c.3748G>A	p.Val1250Met	p.V1250M	ENST00000356435		1250	Gtg/Atg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49441780	49441780	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			924	95	733	1	ENST00000301067.7:c.4204C>T	p.Gln1402Ter	p.Q1402*	ENST00000301067	NM_003482.3	1402	Cag/Tag					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42052520	42052520	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	153	671	0	ENST00000219905.7:c.7192-1G>T		p.X2398_splice	ENST00000219905	NM_001164273.1	2398						NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91304065	91304065	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	58	631	0	ENST00000355112.3:c.1462G>A	p.Glu488Lys	p.E488K	ENST00000355112	NM_000057.2	488	Gaa/Aaa					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857551	9857551	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			724	50	409	0	ENST00000330684.3:c.3850C>G	p.Leu1284Val	p.L1284V	ENST00000330684	NM_001134407.1	1284	Cta/Gta					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576855	7576855	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	37	450	1	ENST00000269305.4:c.991C>T	p.Gln331Ter	p.Q331*	ENST00000269305	NM_001126112.2	331	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	84	590	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37856552	37856552	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	291	454	0	ENST00000269571.5:c.61G>T	p.Ala21Ser	p.A21S	ENST00000269571		21	Gcg/Tcg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11141449	11141449	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	51	599	0	ENST00000344626.4:c.3426C>G	p.Phe1142Leu	p.F1142L	ENST00000344626	NM_003072.3	1142	ttC/ttG					NEWRECORD																																																																									
BRD4	0	MSKCC	GRCh37	19	15375572	15375572	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	90	416	0	ENST00000263377.2:c.855G>C	p.Lys285Asn	p.K285N	ENST00000263377	NM_058243.2	285	aaG/aaC					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17940919	17940919	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	30	446	1	ENST00000458235.1:c.3205G>A	p.Glu1069Lys	p.E1069K	ENST00000458235	NM_000215.3	1069	Gag/Aag					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	43	333	0	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47038822	47038822	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			150	56	157	0	ENST00000329236.7:c.598C>T	p.Gln200Ter	p.Q200*	ENST00000329236	NM_001204466.1	200	Cag/Tag					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123224449	123224449	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012088-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	70	365	0	ENST00000218089.9:c.3302G>A	p.Ser1101Asn	p.S1101N	ENST00000218089	NM_001042749.1	1101	aGt/aAt					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			551	400	404	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578533	7578536	+	frameshift_variant	Frame_Shift_Del	DEL	TCTT	TCTT	-			P-0014803-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			807	439	811	0	ENST00000269305.4:c.394_397del	p.Lys132CysfsTer37	p.K132Cfs*37	ENST00000269305	NM_001126112.2	132	AAGAtg/tg					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24135804	24135805	+	frameshift_variant	Frame_Shift_Del	DEL	AG	AG	-			P-0010092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1379	274	602	0	ENST00000263121.7:c.294_295del	p.Glu98AspfsTer7	p.E98Dfs*7	ENST00000263121	NM_003073.3	97	gaAGag/gaag					NEWRECORD																																																																									
SMARCB1	0	MSKCC	GRCh37	22	24145567	24145567	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010092-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	229	461	0	ENST00000263121.7:c.586del	p.Asp196MetfsTer13	p.D196Mfs*13	ENST00000263121	NM_003073.3	196	Gat/at					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	37	542	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57857517	57857517	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1910	126	995	0	ENST00000228682.2:c.43G>T	p.Glu15Ter	p.E15*	ENST00000228682	NM_005269.2	15	Gag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	50	715	0	ENST00000269305.4:c.586C>G	p.Arg196Gly	p.R196G	ENST00000269305	NM_001126112.2	196	Cga/Gga					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591115	67591123	+	inframe_deletion	In_Frame_Del	DEL	CTTATCCAG	CTTATCCAG	-			P-0012387-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			781	55	373	0	ENST00000274335.5:c.1710_1718del	p.Ile571_Leu573del	p.I571_L573del	ENST00000274335		570	CTTATCCAG/-					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			571	421	308	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579311	7579311	+	splice_donor_variant	Splice_Site	SNP	C	C	A			P-0012586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			306	132	273	0	ENST00000269305.4:c.375+1G>T		p.X125_splice	ENST00000269305	NM_001126112.2	125						NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5244020	5244020	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	211	576	1	ENST00000357368.4:c.1462G>A	p.Val488Met	p.V488M	ENST00000357368	NM_002850.3	488	Gtg/Atg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40899087	40899087	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			559	176	623	0	ENST00000373198.4:c.2183T>A	p.Met728Lys	p.M728K	ENST00000373198	NM_133170.3	728	aTg/aAg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106648	27106648	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	8	654	1	ENST00000324856.7:c.6259G>A	p.Gly2087Arg	p.G2087R	ENST00000324856	NM_006015.4	2087	Gga/Aga					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113113	209113113	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			106	10	559	0	ENST00000345146.2:c.394C>T	p.Arg132Cys	p.R132C	ENST00000345146	NM_005896.2	132	Cgt/Tgt					NEWRECORD																																																																									
POLD1	0	MSKCC	GRCh37	19	50919882	50919882	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013159-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			177	10	719	1	ENST00000440232.2:c.2969G>A	p.Arg990His	p.R990H	ENST00000440232	NM_002691.3	990	cGc/cAc					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25378562	25378562	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0009013-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			306	297	323	0	ENST00000256078.4:c.436G>A	p.Ala146Thr	p.A146T	ENST00000256078	NM_033360.2	146	Gca/Aca					NEWRECORD																																																																									
GNAS	2778	MSKCC	GRCh37	20	57484420	57484420	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11554273		P-0009013-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			456	173	349	1	ENST00000371085.3:c.601C>T	p.Arg201Cys	p.R201C	ENST00000371085	NM_000516.4	201	Cgt/Tgt					NEWRECORD																																																																									
SH2B3	0	MSKCC	GRCh37	12	111856332	111856332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0009013-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			336	32	90	0	ENST00000341259.2:c.383G>A	p.Arg128Gln	p.R128Q	ENST00000341259	NM_005475.2	128	cGg/cAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0012106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			912	139	323	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577536	7577536	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			881	140	431	0	ENST00000269305.4:c.745A>T	p.Arg249Trp	p.R249W	ENST00000269305	NM_001126112.2	249	Agg/Tgg					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57858985	57858985	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs142957882		P-0012106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1567	216	669	2	ENST00000228682.2:c.481C>T	p.Arg161Trp	p.R161W	ENST00000228682	NM_005269.2	161	Cgg/Tgg					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15841201	15841201	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012106-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			458	171	214	0	ENST00000307771.7:c.1285C>T	p.Arg429Cys	p.R429C	ENST00000307771	NM_005089.3	429	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			67	741	461	1	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174840	112174840	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0012091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			41	494	332	0	ENST00000257430.4:c.3549T>A	p.Tyr1183Ter	p.Y1183*	ENST00000257430	NM_000038.5	1183	taT/taA					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120478151	120478151	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	649	360	0	ENST00000256646.2:c.3599G>A	p.Gly1200Asp	p.G1200D	ENST00000256646	NM_024408.3	1200	gGc/gAc					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115117756	115117756	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	595	383	0	ENST00000257566.3:c.679C>A	p.His227Asn	p.H227N	ENST00000257566	NM_016569.3	227	Cac/Aac					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10031971	10031971	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			915	806	538	0	ENST00000330684.3:c.852G>A	p.Trp284Ter	p.W284*	ENST00000330684	NM_001134407.1	284	tgG/tgA					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3094675	3094675	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	328	292	0	ENST00000078429.4:c.26G>T	p.Cys9Phe	p.C9F	ENST00000078429	NM_002067.2	9	tGt/tTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577113	7577113	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			752	55	479	0	ENST00000269305.4:c.825T>G	p.Cys275Trp	p.C275W	ENST00000269305	NM_001126112.2	275	tgT/tgG					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579528	7579528	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs1064794618		P-0010300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	139	380	0	ENST00000269305.4:c.159G>A	p.Trp53Ter	p.W53*	ENST00000269305	NM_001126112.2	53	tgG/tgA					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37880219	37880220	+	missense_variant	Missense_Mutation	DNP	TT	TT	CC			P-0010300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	799	665	2	ENST00000269571.5:c.2263_2264delTTinsCC	p.Leu755Pro	p.L755P	ENST00000269571		755	TTg/CCg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151864332	151864334	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0010300-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	135	692	0	ENST00000262189.6:c.9647_9649del	p.Gln3216del	p.Q3216del	ENST00000262189	NM_170606.2	3216	cAACgt/cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577509	7577509	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			735	94	524	0	ENST00000269305.4:c.772G>T	p.Glu258Ter	p.E258*	ENST00000269305	NM_001126112.2	258	Gaa/Taa					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149449781	149449781	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	106	509	0	ENST00000286301.3:c.1283A>T	p.Asn428Ile	p.N428I	ENST00000286301	NM_005211.3	428	aAc/aTc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180076538	180076538	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	59	178	0	ENST00000261937.6:c.8G>T	p.Arg3Leu	p.R3L	ENST00000261937	NM_182925.4	3	cGg/cTg					NEWRECORD																																																																									
PRDM1	0	MSKCC	GRCh37	6	106554879	106554879	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	41	349	1	ENST00000369096.4:c.1996G>C	p.Ala666Pro	p.A666P	ENST00000369096	NM_001198.3	666	Gcc/Ccc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106513335	106513335	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1150	101	560	0	ENST00000359195.3:c.2239C>A	p.Leu747Ile	p.L747I	ENST00000359195	NM_002649.2	747	Ctt/Att					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8375991	8375991	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1144	149	694	0	ENST00000356435.5:c.4606C>G	p.Arg1536Gly	p.R1536G	ENST00000356435		1536	Cgt/Ggt					NEWRECORD																																																																									
LMO1	0	MSKCC	GRCh37	11	8251946	8251946	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	71	701	0	ENST00000335790.3:c.131G>C	p.Trp44Ser	p.W44S	ENST00000335790	NM_002315.2	44	tGg/tCg					NEWRECORD																																																																									
H3F3C	0	MSKCC	GRCh37	12	31944943	31944943	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			856	73	439	0	ENST00000340398.3:c.158G>T	p.Arg53Leu	p.R53L	ENST00000340398	NM_001013699.2	53	cGt/cTt					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89349904	89349904	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2282	136	1271	1	ENST00000301030.4:c.3046G>T	p.Asp1016Tyr	p.D1016Y	ENST00000301030	NM_001256183.1	1016	Gat/Tat					NEWRECORD																																																																									
YES1	0	MSKCC	GRCh37	18	756566	756566	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	82	425	0	ENST00000314574.4:c.262G>T	p.Gly88Cys	p.G88C	ENST00000314574	NM_005433.3	88	Ggt/Tgt					NEWRECORD																																																																									
INSR	0	MSKCC	GRCh37	19	7143003	7143003	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	78	510	0	ENST00000302850.5:c.2366C>T	p.Pro789Leu	p.P789L	ENST00000302850	NM_000208.2	789	cCc/cTc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41076911	41076911	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	80	685	0	ENST00000373198.4:c.1509C>A	p.Tyr503Ter	p.Y503*	ENST00000373198	NM_133170.3	503	taC/taA					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15840919	15840919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	79	508	0	ENST00000307771.7:c.1003C>T	p.Pro335Ser	p.P335S	ENST00000307771	NM_005089.3	335	Ccc/Tcc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971132	21971132	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	59	362	0	ENST00000304494.5:c.226del	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	76	Gcc/cc					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971132	21971132	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	59	362	0	ENST00000304494.5:c.226del	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	76	Gcc/cc					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971132	21971133	+	frameshift_variant	Frame_Shift_Del	DEL	CG	CG	A			P-0012875-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			442	59	362	0	ENST00000304494.5:c.225_226delinsT	p.Ala76ProfsTer70	p.A76Pfs*70	ENST00000304494	NM_000077.4	75	ccCGcc/ccTcc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0012153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			163	173	224	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578492	7578492	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	305	463	1	ENST00000269305.4:c.438G>A	p.Trp146Ter	p.W146*	ENST00000269305	NM_001126112.2	146	tgG/tgA					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12013737	12013737	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			227	148	316	0	ENST00000353533.5:c.679C>G	p.His227Asp	p.H227D	ENST00000353533	NM_003010.3	227	Cac/Gac					NEWRECORD																																																																									
AR	0	MSKCC	GRCh37	X	66765229	66765229	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012153-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	232	415	0	ENST00000374690.3:c.241G>C	p.Glu81Gln	p.E81Q	ENST00000374690	NM_000044.3	81	Gag/Cag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0015077-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			980	58	672	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577581	7577581	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	381	569	0	ENST00000269305.4:c.700T>A	p.Tyr234Asn	p.Y234N	ENST00000269305	NM_001126112.2	234	Tac/Aac					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030451	49030451	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	226	296	1	ENST00000267163.4:c.1926del	p.Lys643AsnfsTer15	p.K643Nfs*15	ENST00000267163	NM_000321.2	642	ttG/tt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	423	498	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578509	7578509	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	438	581	2	ENST00000269305.4:c.421T>G	p.Cys141Gly	p.C141G	ENST00000269305	NM_001126112.2	141	Tgc/Ggc					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148506428	148506428	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013053-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			879	224	630	0	ENST00000320356.2:c.2084C>T	p.Ser695Leu	p.S695L	ENST00000320356	NM_004456.4	695	tCg/tTg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7579463	7579463	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			91	358	338	0	ENST00000269305.4:c.224del	p.Pro75LeufsTer48	p.P75Lfs*48	ENST00000269305	NM_001126112.2	75	cCt/ct					NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103527891	103527891	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			469	416	317	0	ENST00000355739.4:c.3199T>G	p.Ser1067Ala	p.S1067A	ENST00000355739	NM_000123.3	1067	Tca/Gca					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29416111	29416111	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010226-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			409	306	273	0	ENST00000389048.3:c.4842C>A	p.Ser1614Arg	p.S1614R	ENST00000389048	NM_004304.4	1614	agC/agA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			541	187	327	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30732970	30732970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	172	196	0	ENST00000359013.4:c.1658G>A	p.Arg553His	p.R553H	ENST00000359013	NM_001024847.2	553	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578470	7578482	+	frameshift_variant	Frame_Shift_Del	DEL	CGGGCGGGGGTGT	CGGGCGGGGGTGT	-			P-0014457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1177	92	398	0	ENST00000269305.4:c.448_460del	p.Thr150AlafsTer16	p.T150Afs*16	ENST00000269305	NM_001126112.2	150	ACACCCCCGCCCGgc/gc					NEWRECORD																																																																									
CDKN1A	0	MSKCC	GRCh37	6	36651902	36651902	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0014457-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			770	203	313	0	ENST00000244741.5:c.25del	p.Arg9ValfsTer22	p.R9Vfs*22	ENST00000244741	NM_000389.4	8	gtC/gt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0012377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	412	771	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243809217	243809217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	342	883	0	ENST00000263826.5:c.407C>T	p.Ser136Phe	p.S136F	ENST00000263826	NM_005465.4	136	tCt/tTt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198257118	198257118	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	300	649	0	ENST00000335508.6:c.3824G>C	p.Gly1275Ala	p.G1275A	ENST00000335508	NM_012433.2	1275	gGt/gCt					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2223776	2223787	+	splice_acceptor_variant,intron_variant	Splice_Site	DEL	CTTGGCCCTGCA	CTTGGCCCTGCA	-			P-0012377-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	320	760	0	ENST00000326181.6:c.1087-13_1087-2del		p.X363_splice	ENST00000326181	NM_032271.2	363						NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139413049	139413049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			396	63	412	0	ENST00000277541.6:c.1093C>T	p.Arg365Cys	p.R365C	ENST00000277541	NM_017617.3	365	Cgc/Tgc					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61722661	61722661	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			681	86	340	0	ENST00000401558.2:c.976C>G	p.Leu326Val	p.L326V	ENST00000401558	NM_003400.3	326	Ctc/Gtc					NEWRECORD																																																																									
FOXL2	0	MSKCC	GRCh37	3	138664825	138664825	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			294	122	237	0	ENST00000330315.3:c.740G>A	p.Gly247Glu	p.G247E	ENST00000330315	NM_023067.3	247	gGg/gAg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630110	187630110	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			727	172	500	0	ENST00000441802.2:c.872C>G	p.Ser291Cys	p.S291C	ENST00000441802	NM_005245.3	291	tCt/tGt					NEWRECORD																																																																									
TRAF2	0	MSKCC	GRCh37	9	139818360	139818360	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014766-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			846	179	663	3	ENST00000247668.2:c.1195G>A	p.Asp399Asn	p.D399N	ENST00000247668	NM_021138.3	399	Gac/Aac					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117678076	117678076	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0013648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			224	274	380	0	ENST00000368508.3:c.3857G>A	p.Arg1286His	p.R1286H	ENST00000368508	NM_002944.2	1286	cGc/cAc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220640	1220640	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	281	546	1	ENST00000326873.7:c.658C>T	p.Gln220Ter	p.Q220*	ENST00000326873	NM_000455.4	220	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578435	7578444	+	frameshift_variant	Frame_Shift_Del	DEL	CTGCTTGTAG	CTGCTTGTAG	-			P-0013648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			174	211	358	0	ENST00000269305.4:c.486_495del	p.Tyr163HisfsTer4	p.Y163Hfs*4	ENST00000269305	NM_001126112.2	162	atCTACAAGCAG/at					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15840974	15840974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	247	369	0	ENST00000307771.7:c.1058C>A	p.Thr353Asn	p.T353N	ENST00000307771	NM_005089.3	353	aCt/aAt					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39921998	39921998	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013648-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	34	353	0	ENST00000378444.4:c.4173+1G>A		p.X1391_splice	ENST00000378444	NM_001123385.1	1391						NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73349333	73349360	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	CTGCTTAGATTCATACCATTCGTTCTGT	CTGCTTAGATTCATACCATTCGTTCTGT	-			P-0011278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	75	303	0	ENST00000377767.4:c.976_987+16del		p.X326_splice	ENST00000377767	NM_014953.3	326						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577536	7577564	+	frameshift_variant	Frame_Shift_Del	DEL	TCCGGTTCATGCCGCCCATGCAGGAACTG	TCCGGTTCATGCCGCCCATGCAGGAACTG	-			P-0011278-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	111	438	0	ENST00000269305.4:c.717_745del	p.Asn239LysfsTer15	p.N239Kfs*15	ENST00000269305	NM_001126112.2	239	aaCAGTTCCTGCATGGGCGGCATGAACCGGAgg/aagg					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55249071	55249071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			3301	215	663	0	ENST00000275493.2:c.2369C>T	p.Thr790Met	p.T790M	ENST00000275493	NM_005228.3	790	aCg/aTg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	2029	479	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	395	494	0	ENST00000269305.4:c.473G>T	p.Arg158Leu	p.R158L	ENST00000269305	NM_001126112.2	158	cGc/cTc					NEWRECORD																																																																									
PTCH1	0	MSKCC	GRCh37	9	98244270	98244270	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			645	192	557	0	ENST00000331920.6:c.707G>C	p.Trp236Ser	p.W236S	ENST00000331920	NM_000264.3	236	tGg/tCg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29665047	29665047	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			369	94	242	0	ENST00000358273.4:c.6709G>T	p.Ala2237Ser	p.A2237S	ENST00000358273	NM_001042492.2	2237	Gca/Tca					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47041174	47041193	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCAAATCTGAGCTCCAGA	GCTCAAATCTGAGCTCCAGA	-			P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	254	766	0	ENST00000329236.7:c.1370_1389del	p.Leu457ProfsTer5	p.L457Pfs*5	ENST00000329236	NM_001204466.1	456	gtGCTCAAATCTGAGCTCCAGAgc/gtgc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66231766	66231767	+	frameshift_variant	Frame_Shift_Del	DEL	GG	GG	A			P-0013315-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	157	432	0	ENST00000273854.3:c.1933_1934delinsT	p.Pro645Ter	p.P645*	ENST00000273854	NM_004439.5	645	CCa/Ta					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15300226	15300226	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014280-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			449	45	871	0	ENST00000263388.2:c.1050C>A	p.His350Gln	p.H350Q	ENST00000263388	NM_000435.2	350	caC/caA					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	283	408	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123220579	123220579	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1169	249	764	0	ENST00000218089.9:c.3236C>G	p.Thr1079Arg	p.T1079R	ENST00000218089	NM_001042749.1	1079	aCa/aGa					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31368176	31368176	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1005	373	684	0	ENST00000328111.2:c.47G>T	p.Gly16Val	p.G16V	ENST00000328111	NM_006892.3	16	gGg/gTg					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72058610	72058610	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	119	749	1	ENST00000357731.5:c.830G>T	p.Ser277Ile	p.S277I	ENST00000357731	NM_173808.2	277	aGc/aTc					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243716193	243716193	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	247	557	0	ENST00000263826.5:c.1001T>A	p.Val334Asp	p.V334D	ENST00000263826	NM_005465.4	334	gTt/gAt					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131915022	131915022	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			278	246	358	1	ENST00000265335.6:c.379G>T	p.Val127Phe	p.V127F	ENST00000265335		127	Gtc/Ttc					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81359046	81359046	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	323	596	0	ENST00000222390.5:c.915C>A	p.Cys305Ter	p.C305*	ENST00000222390	NM_000601.4	305	tgC/tgA					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508370	106508370	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	103	173	0	ENST00000359195.3:c.364C>A	p.Leu122Met	p.L122M	ENST00000359195	NM_002649.2	122	Ctg/Atg					NEWRECORD																																																																									
HNF1A	0	MSKCC	GRCh37	12	121431383	121431383	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			512	86	484	0	ENST00000257555.6:c.587C>T	p.Thr196Ile	p.T196I	ENST00000257555		196	aCc/aTc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48916734	48916734	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	394	363	0	ENST00000267163.4:c.265-1G>A		p.X89_splice	ENST00000267163	NM_000321.2	89						NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88476309	88476309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	40	535	0	ENST00000360948.2:c.1823G>T	p.Gly608Val	p.G608V	ENST00000360948	NM_001012338.2	608	gGc/gTc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577555	7577556	+	frameshift_variant	Frame_Shift_Del	DEL	GC	GC	A			P-0012913-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			385	609	477	1	ENST00000269305.4:c.725_726delinsT	p.Cys242LeufsTer5	p.C242Lfs*5	ENST00000269305	NM_001126112.2	242	tGC/tT					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78430799	78430799	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			425	75	464	0	ENST00000370768.2:c.590C>T	p.Ala197Val	p.A197V	ENST00000370768	NM_003902.3	197	gCa/gTa					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66519029	66519029	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010026-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	110	492	0	ENST00000358598.2:c.310G>A	p.Val104Ile	p.V104I	ENST00000358598	NM_212471.2	104	Gtc/Atc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509033	106509033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014312-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			622	39	762	1	ENST00000359195.3:c.1027G>A	p.Gly343Ser	p.G343S	ENST00000359195	NM_002649.2	343	Ggc/Agc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			583	94	624	1	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16255086	16255086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			772	112	595	1	ENST00000375759.3:c.2351G>T	p.Arg784Leu	p.R784L	ENST00000375759	NM_015001.2	784	cGc/cTc					NEWRECORD																																																																									
NUP93	0	MSKCC	GRCh37	16	56862971	56862971	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			715	141	611	0	ENST00000308159.5:c.877G>T	p.Val293Phe	p.V293F	ENST00000308159	NM_014669.4	293	Gtt/Ttt					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67654676	67654676	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014285-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			744	167	669	0	ENST00000264010.4:c.1163G>T	p.Ser388Ile	p.S388I	ENST00000264010	NM_006565.3	388	aGc/aTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0006147-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			961	209	600	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006147-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			396	90	285	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006147-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			396	90	285	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971138	21971138	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0006147-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			396	90	285	0	ENST00000304494.5:c.220G>A	p.Asp74Asn	p.D74N	ENST00000304494	NM_000077.4	74	Gac/Aac					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576891	7576891	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0006147-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			882	149	519	1	ENST00000269305.4:c.955A>T	p.Lys319Ter	p.K319*	ENST00000269305	NM_001126112.2	319	Aag/Tag					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89882992	89882992	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0006147-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			563	59	355	0	ENST00000389301.3:c.32C>G	p.Ser11Trp	p.S11W	ENST00000389301	NM_000135.2	11	tCg/tGg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48593397	48593397	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006147-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			687	107	414	0	ENST00000342988.3:c.1148T>A	p.Ile383Lys	p.I383K	ENST00000342988	NM_005359.5	383	aTa/aAa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577559	7577559	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			605	223	433	0	ENST00000269305.4:c.722C>T	p.Ser241Phe	p.S241F	ENST00000269305	NM_001126112.2	241	tCc/tTc					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952018	178952018	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	101	459	0	ENST00000263967.3:c.3073A>G	p.Thr1025Ala	p.T1025A	ENST00000263967	NM_006218.2	1025	Acc/Gcc					NEWRECORD																																																																									
PPP2R1A	0	MSKCC	GRCh37	19	52714661	52714661	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	211	475	0	ENST00000322088.6:c.419G>T	p.Trp140Leu	p.W140L	ENST00000322088	NM_014225.5	140	tGg/tTg					NEWRECORD																																																																									
IKZF1	0	MSKCC	GRCh37	7	50467631	50467631	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	39	270	0	ENST00000331340.3:c.866C>T	p.Ser289Phe	p.S289F	ENST00000331340	NM_006060.4	289	tCc/tTc					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39933722	39933722	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013722-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			761	121	590	0	ENST00000378444.4:c.877G>A	p.Val293Ile	p.V293I	ENST00000378444	NM_001123385.1	293	Gtc/Atc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			622	202	548	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			657	210	486	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16260476	16260476	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			596	202	356	0	ENST00000375759.3:c.7741C>T	p.Pro2581Ser	p.P2581S	ENST00000375759	NM_015001.2	2581	Cct/Tct					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108158326	108158326	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014657-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			503	148	390	0	ENST00000278616.4:c.3994-1G>C		p.X1332_splice	ENST00000278616	NM_000051.3	1332						NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			826	376	420	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11143985	11143985	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			743	307	295	1	ENST00000344626.4:c.3566G>A	p.Arg1189Gln	p.R1189Q	ENST00000344626	NM_003072.3	1189	cGa/cAa					NEWRECORD																																																																									
MLH1	0	MSKCC	GRCh37	3	37090407	37090407	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	229	512	0	ENST00000231790.2:c.2002G>A	p.Glu668Lys	p.E668K	ENST00000231790	NM_000249.3	668	Gaa/Aaa					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49400042	49400042	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1120	74	531	0	ENST00000418115.1:c.295T>C	p.Trp99Arg	p.W99R	ENST00000418115	NM_001664.2	99	Tgg/Cgg					NEWRECORD																																																																									
IRF4	0	MSKCC	GRCh37	6	405025	405025	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	82	416	0	ENST00000380956.4:c.1107A>C	p.Gln369His	p.Q369H	ENST00000380956	NM_001195286.1	369	caA/caC					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372325	55372325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			654	77	248	0	ENST00000297316.4:c.1015G>A	p.Ala339Thr	p.A339T	ENST00000297316	NM_022454.3	339	Gca/Aca					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145737838	145737838	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			751	42	301	0	ENST00000428558.2:c.2992T>C	p.Trp998Arg	p.W998R	ENST00000428558	NM_004260.3	998	Tgg/Cgg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8485767	8485767	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			597	91	403	1	ENST00000356435.5:c.3050A>T	p.Asp1017Val	p.D1017V	ENST00000356435		1017	gAt/gTt					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101904894	101904894	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			741	97	442	0	ENST00000374994.4:c.882A>T	p.Arg294Ser	p.R294S	ENST00000374994	NM_004612.2	294	agA/agT					NEWRECORD																																																																									
NKX2-1	0	MSKCC	GRCh37	14	36986895	36986895	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	51	160	0	ENST00000354822.5:c.794G>C	p.Gly265Ala	p.G265A	ENST00000354822	NM_001079668.2	265	gGc/gCc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591905	48591931	+	inframe_deletion	In_Frame_Del	DEL	TTCTGGAGGAGATCGCTTTTGTTTGGG	TTCTGGAGGAGATCGCTTTTGTTTGGG	-			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	151	569	0	ENST00000342988.3:c.1069_1095del	p.Ser357_Gly365del	p.S357_G365del	ENST00000342988	NM_005359.5	356	ccTTCTGGAGGAGATCGCTTTTGTTTGGGt/cct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577120	7577133	+	frameshift_variant	Frame_Shift_Del	DEL	CGCACCTCAAAGCT	CGCACCTCAAAGCT	-			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	816	547	0	ENST00000269305.4:c.805_818del	p.Ser269CysfsTer32	p.S269Cfs*32	ENST00000269305	NM_001126112.2	269	AGCTTTGAGGTGCGt/t					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29528495	29528518	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	ATCACCAATGTAAGTCCAAAAGGT	ATCACCAATGTAAGTCCAAAAGGT	-			P-0010948-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			788	148	557	0	ENST00000358273.4:c.1254_1260+17del		p.X418_splice	ENST00000358273	NM_001042492.2	418						NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48954321	48954321	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0014268-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	18	268	0	ENST00000267163.4:c.1446del	p.His483IlefsTer12	p.H483Ifs*12	ENST00000267163	NM_000321.2	481	aTt/at					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	58	559	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578390	7578410	+	inframe_deletion	In_Frame_Del	DEL	CTCATGGTGGGGGCAGCGCCT	CTCATGGTGGGGGCAGCGCCT	-			P-0013532-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			166	10	434	0	ENST00000269305.4:c.520_540del	p.Arg175_Arg181del	p.R175_R181del	ENST00000269305	NM_001126112.2	174	AGGCGCTGCCCCCACCATGAG/-					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453155	140453155	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010605-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			676	29	332	0	ENST00000288602.6:c.1780G>A	p.Asp594Asn	p.D594N	ENST00000288602	NM_004333.4	594	Gat/Aat					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624259	89624260	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0014395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			367	85	371	0	ENST00000371953.3:c.34_35del	p.Asn12GlnfsTer31	p.N12Qfs*31	ENST00000371953	NM_000314.4	11	agAAac/agac					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89259629	89259629	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014395-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	67	353	1	ENST00000336596.2:c.773C>A	p.Ser258Tyr	p.S258Y	ENST00000336596	NM_005233.5	258	tCc/tAc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	116	450	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0012723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	73	350	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220487	1220487	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			846	78	632	0	ENST00000326873.7:c.580G>A	p.Asp194Asn	p.D194N	ENST00000326873	NM_000455.4	194	Gac/Aac					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9520208	9520208	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012723-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			903	72	529	0	ENST00000353224.5:c.2061G>C	p.Gln687His	p.Q687H	ENST00000353224	NM_177990.2	687	caG/caC					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178927980	178927980	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	75	223	0	ENST00000263967.3:c.1258T>C	p.Cys420Arg	p.C420R	ENST00000263967	NM_006218.2	420	Tgt/Cgt					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120466413	120466413	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014485-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	203	512	0	ENST00000256646.2:c.4706T>C	p.Leu1569Pro	p.L1569P	ENST00000256646	NM_024408.3	1569	cTg/cCg					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101904843	101904843	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	269	503	0	ENST00000374994.4:c.831G>A	p.Trp277Ter	p.W277*	ENST00000374994	NM_004612.2	277	tgG/tgA					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118377171	118377171	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			733	219	744	0	ENST00000534358.1:c.10564C>G	p.Pro3522Ala	p.P3522A	ENST00000534358	NM_005933.3	3522	Cca/Gca					NEWRECORD																																																																									
PTPN11	0	MSKCC	GRCh37	12	112915679	112915679	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	205	527	0	ENST00000351677.2:c.952T>G	p.Cys318Gly	p.C318G	ENST00000351677	NM_002834.3	318	Tgc/Ggc					NEWRECORD																																																																									
ZRSR2	0	MSKCC	GRCh37	X	15838337	15838337	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1060	263	991	0	ENST00000307771.7:c.835G>C	p.Glu279Gln	p.E279Q	ENST00000307771	NM_005089.3	279	Gaa/Caa					NEWRECORD																																																																									
BCOR	0	MSKCC	GRCh37	X	39933688	39933688	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012909-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	179	734	0	ENST00000378444.4:c.911A>G	p.Tyr304Cys	p.Y304C	ENST00000378444	NM_001123385.1	304	tAt/tGt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	126	495	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42041397	42041397	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1435	205	887	1	ENST00000219905.7:c.5592G>A	p.Met1864Ile	p.M1864I	ENST00000219905	NM_001164273.1	1864	atG/atA					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151945373	151945373	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			222	28	163	0	ENST00000262189.6:c.2146G>A	p.Val716Ile	p.V716I	ENST00000262189	NM_170606.2	716	Gtt/Att					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87563401	87563401	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			630	46	391	0	ENST00000277120.3:c.1789G>T	p.Ala597Ser	p.A597S	ENST00000277120		597	Gca/Tca					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42042733	42042733	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012439-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	135	875	0	ENST00000219905.7:c.6928G>C	p.Glu2310Gln	p.E2310Q	ENST00000219905	NM_001164273.1	2310	Gag/Cag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			10	54	296	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198266834	198266834	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			88	40	654	0	ENST00000335508.6:c.2098A>G	p.Lys700Glu	p.K700E	ENST00000335508	NM_012433.2	700	Aaa/Gaa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108198474	108198474	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			7	43	398	0	ENST00000278616.4:c.7078T>A	p.Tyr2360Asn	p.Y2360N	ENST00000278616	NM_000051.3	2360	Tat/Aat					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100611845	100611845	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013586-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	33	1048	1	ENST00000308731.7:c.1276G>A	p.Asp426Asn	p.D426N	ENST00000308731	NM_000061.2	426	Gac/Aac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			445	196	334	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
U2AF1	7307	MSKCC	GRCh37	21	44524456	44524456	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs371769427		P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	47	274	1	ENST00000291552.4:c.101C>T	p.Ser34Phe	p.S34F	ENST00000291552	NM_006758.2	34	tCt/tTt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123182858	123182858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	54	182	0	ENST00000218089.9:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000218089	NM_001042749.1	275	Cag/Tag					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29448419	29448419	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs140733978		P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			851	65	551	2	ENST00000389048.3:c.3080C>T	p.Pro1027Leu	p.P1027L	ENST00000389048	NM_004304.4	1027	cCg/cTg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134884839	134884839	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	47	440	0	ENST00000398015.3:c.1615C>A	p.Leu539Met	p.L539M	ENST00000398015	NM_004441.4	539	Ctg/Atg					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55603348	55603348	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	93	386	0	ENST00000288135.5:c.2704A>G	p.Ile902Val	p.I902V	ENST00000288135	NM_000222.2	902	Ata/Gta					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467778	66467778	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	36	364	0	ENST00000273854.3:c.491G>A	p.Arg164Lys	p.R164K	ENST00000273854	NM_004439.5	164	aGa/aAa					NEWRECORD																																																																									
FGF4	0	MSKCC	GRCh37	11	69588870	69588870	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	182	424	0	ENST00000168712.1:c.366G>T	p.Glu122Asp	p.E122D	ENST00000168712	NM_002007.2	122	gaG/gaT					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108205781	108205781	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	153	311	0	ENST00000278616.4:c.8096C>T	p.Pro2699Leu	p.P2699L	ENST00000278616	NM_000051.3	2699	cCa/cTa					NEWRECORD																																																																									
CDK8	0	MSKCC	GRCh37	13	26978105	26978105	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	58	556	0	ENST00000381527.3:c.1282C>T	p.His428Tyr	p.H428Y	ENST00000381527	NM_001260.1	428	Cat/Tat					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9862854	9862854	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	54	407	0	ENST00000330684.3:c.2449A>G	p.Met817Val	p.M817V	ENST00000330684	NM_001134407.1	817	Atg/Gtg					NEWRECORD																																																																									
CALR	0	MSKCC	GRCh37	19	13054549	13054549	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			871	98	741	1	ENST00000316448.5:c.1076A>T	p.Asp359Val	p.D359V	ENST00000316448	NM_004343.3	359	gAc/gTc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41513417	41513417	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	60	478	2	ENST00000263253.7:c.321G>T	p.Gln107His	p.Q107H	ENST00000263253	NM_001429.3	107	caG/caT					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78867528	78867534	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCCGG	CCCCCGG	-			P-0011154-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			548	149	361	1	ENST00000306801.3:c.2264_2270del	p.Ser755Ter	p.S755*	ENST00000306801	NM_020761.2	755	tCCCCCGGa/ta					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0012596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	55	597	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57865432	57865432	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012596-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1499	114	923	1	ENST00000228682.2:c.2909G>T	p.Cys970Phe	p.C970F	ENST00000228682	NM_005269.2	970	tGc/tTc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	95	444	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30713832	30713832	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012523-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	107	481	0	ENST00000359013.4:c.1232T>C	p.Leu411Pro	p.L411P	ENST00000359013	NM_001024847.2	411	cTc/cCc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578234	7578234	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1043	264	695	0	ENST00000269305.4:c.615T>A	p.Tyr205Ter	p.Y205*	ENST00000269305	NM_001126112.2	205	taT/taA					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29913035	29913035	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014376-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1148	139	583	0	ENST00000376809.5:c.1070A>G	p.Asp357Gly	p.D357G	ENST00000376809	NM_002116.7	357	gAt/gGt					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39817469	39817469	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			878	92	555	0	ENST00000288319.7:c.94G>C	p.Glu32Gln	p.E32Q	ENST00000288319	NM_182918.3	32	Gag/Cag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578208	7578208	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1142	245	895	0	ENST00000269305.4:c.641A>G	p.His214Arg	p.H214R	ENST00000269305	NM_001126112.2	214	cAt/cGt					NEWRECORD																																																																									
MDM4	0	MSKCC	GRCh37	1	204499942	204499942	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			889	74	490	0	ENST00000367182.3:c.284C>A	p.Pro95Gln	p.P95Q	ENST00000367182	NM_001278516.1	95	cCa/cAa					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29519831	29519831	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	203	660	1	ENST00000389048.3:c.1740G>T	p.Met580Ile	p.M580I	ENST00000389048	NM_004304.4	580	atG/atT					NEWRECORD																																																																									
RAF1	0	MSKCC	GRCh37	3	12627235	12627235	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1007	88	594	0	ENST00000251849.4:c.1481C>T	p.Ser494Leu	p.S494L	ENST00000251849	NM_002880.3	494	tCa/tTa					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2969655	2969655	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1109	116	704	0	ENST00000396946.4:c.1624C>G	p.Leu542Val	p.L542V	ENST00000396946	NM_032415.4	542	Ctg/Gtg					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73336145	73336145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	80	592	0	ENST00000377767.4:c.2258A>G	p.Tyr753Cys	p.Y753C	ENST00000377767	NM_014953.3	753	tAc/tGc					NEWRECORD																																																																									
RAD51B	0	MSKCC	GRCh37	14	68331857	68331857	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	76	519	1	ENST00000487270.1:c.452+1G>A		p.X151_splice	ENST00000487270	NM_133509.3	151						NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48026792	48026793	+	frameshift_variant	Frame_Shift_Del	DEL	GT	GT	-			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	151	497	0	ENST00000234420.5:c.1675_1676del	p.Cys559LeufsTer3	p.C559Lfs*3	ENST00000234420	NM_000179.2	557	gGT/g					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29653046	29653047	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0013429-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	316	659	2	ENST00000358273.4:c.5045_5046del	p.Cys1682Ter	p.C1682*	ENST00000358273	NM_001042492.2	1682	TGt/t					NEWRECORD																																																																									
CUL3	0	MSKCC	GRCh37	2	225371708	225371708	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0014931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	191	760	0	ENST00000264414.4:c.896T>G	p.Met299Arg	p.M299R	ENST00000264414	NM_003590.4	299	aTg/aGg					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11132617	11132617	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			605	244	769	6	ENST00000344626.4:c.2833G>A	p.Ala945Thr	p.A945T	ENST00000344626	NM_003072.3	945	Gca/Aca					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100913	27100913	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			471	160	562	2	ENST00000324856.7:c.4195C>T	p.Gln1399Ter	p.Q1399*	ENST00000324856	NM_006015.4	1399	Cag/Tag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49415901	49415902	+	frameshift_variant	Frame_Shift_Del	DEL	CA	CA	-			P-0014931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	154	443	0	ENST00000301067.7:c.16445_16446del	p.Val5482GlyfsTer7	p.V5482Gfs*7	ENST00000301067	NM_003482.3	5482	gTG/g					NEWRECORD																																																																									
SESN1	0	MSKCC	GRCh37	6	109322498	109322498	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014931-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	212	573	0	ENST00000436639.2:c.539G>T	p.Gly180Val	p.G180V	ENST00000436639	NM_014454.2	180	gGa/gTa					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453193	140453193	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	A			P-0012894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			344	40	206	0	ENST00000288602.6:c.1742A>T	p.Asn581Ile	p.N581I	ENST00000288602	NM_004333.4	581	aAt/aTt					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2108872	2108872	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0012894-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	133	515	0	ENST00000219476.3:c.973C>T	p.Gln325Ter	p.Q325*	ENST00000219476	NM_000548.3	325	Cag/Tag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			443	201	474	0	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0014480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			433	129	439	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106193884	106193884	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			318	122	388	0	ENST00000380013.4:c.4346C>A	p.Ser1449Tyr	p.S1449Y	ENST00000380013	NM_001127208.2	1449	tCt/tAt					NEWRECORD																																																																									
AGO2	0	MSKCC	GRCh37	8	141551295	141551295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014480-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			717	259	739	0	ENST00000220592.5:c.2002C>T	p.Arg668Cys	p.R668C	ENST00000220592	NM_012154.3	668	Cgc/Tgc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	94	205	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48955382	48955382	+	splice_acceptor_variant	Splice_Site	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			130	246	208	0	ENST00000267163.4:c.1499-1G>A		p.X500_splice	ENST00000267163	NM_000321.2	500						NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189587118	189587118	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	164	455	0	ENST00000264731.3:c.1135C>T	p.Arg379Cys	p.R379C	ENST00000264731	NM_003722.4	379	Cgt/Tgt					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35873660	35873660	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs201559094		P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	231	468	1	ENST00000303115.3:c.616C>T	p.Arg206Ter	p.R206*	ENST00000303115	NM_002185.3	206	Cga/Tga					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2959019	2959019	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			885	220	304	0	ENST00000396946.4:c.2497C>T	p.Pro833Ser	p.P833S	ENST00000396946	NM_032415.4	833	Ccc/Tcc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057691	27057691	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1170	858	813	1	ENST00000324856.7:c.1399C>T	p.Gln467Ter	p.Q467*	ENST00000324856	NM_006015.4	467	Cag/Tag					NEWRECORD																																																																									
ERRFI1	0	MSKCC	GRCh37	1	8073857	8073857	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1569	272	840	0	ENST00000377482.5:c.802T>A	p.Cys268Ser	p.C268S	ENST00000377482	NM_018948.3	268	Tgt/Agt					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40366928	40366928	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			906	192	336	0	ENST00000397332.2:c.269C>T	p.Pro90Leu	p.P90L	ENST00000397332	NM_001033082.2	90	cCc/cTc					NEWRECORD																																																																									
VTCN1	0	MSKCC	GRCh37	1	117699507	117699507	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			349	92	307	0	ENST00000369458.3:c.134C>T	p.Ala45Val	p.A45V	ENST00000369458	NM_024626.3	45	gCt/gTt					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176105668	176105668	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			476	108	498	0	ENST00000367669.3:c.847C>T	p.Gln283Ter	p.Q283*	ENST00000367669	NM_022457.5	283	Cag/Tag					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29754865	29754865	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	310	369	0	ENST00000389048.3:c.1070C>T	p.Pro357Leu	p.P357L	ENST00000389048	NM_004304.4	357	cCc/cTc					NEWRECORD																																																																									
ERCC3	0	MSKCC	GRCh37	2	128046241	128046241	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			669	155	411	0	ENST00000285398.2:c.1022C>T	p.Pro341Leu	p.P341L	ENST00000285398	NM_000122.1	341	cCc/cTc					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49934758	49934758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	889	711	1	ENST00000296474.3:c.2138C>T	p.Thr713Ile	p.T713I	ENST00000296474	NM_002447.2	713	aCc/aTc					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189455548	189455548	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	89	455	0	ENST00000264731.3:c.82C>G	p.His28Asp	p.H28D	ENST00000264731	NM_003722.4	28	Cat/Gat					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189607245	189607245	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1166	260	581	0	ENST00000264731.3:c.1624C>T	p.Pro542Ser	p.P542S	ENST00000264731	NM_003722.4	542	Ccg/Tcg					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55156495	55156495	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			877	142	397	2	ENST00000257290.5:c.2896C>T	p.His966Tyr	p.H966Y	ENST00000257290	NM_006206.4	966	Cac/Tac					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55948145	55948145	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			822	146	529	0	ENST00000263923.4:c.3826A>G	p.Thr1276Ala	p.T1276A	ENST00000263923	NM_002253.2	1276	Acc/Gcc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66361130	66361130	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			574	232	527	0	ENST00000273854.3:c.1042G>A	p.Asp348Asn	p.D348N	ENST00000273854	NM_004439.5	348	Gat/Aat					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467511	66467511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	130	470	0	ENST00000273854.3:c.758C>T	p.Ser253Phe	p.S253F	ENST00000273854	NM_004439.5	253	tCc/tTc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187527226	187527226	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			396	269	412	0	ENST00000441802.2:c.10348C>T	p.Gln3450Ter	p.Q3450*	ENST00000441802	NM_005245.3	3450	Cag/Tag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154681	112154681	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	120	301	0	ENST00000257430.4:c.952T>G	p.Leu318Val	p.L318V	ENST00000257430	NM_000038.5	318	Ttg/Gtg					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149501586	149501586	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			389	303	331	0	ENST00000261799.4:c.2201G>A	p.Gly734Glu	p.G734E	ENST00000261799	NM_002609.3	734	gGg/gAg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93956510	93956510	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	153	617	1	ENST00000369303.4:c.2726G>A	p.Arg909Lys	p.R909K	ENST00000369303	NM_004440.3	909	aGg/aAg					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	93967203	93967203	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	145	630	0	ENST00000369303.4:c.2149G>A	p.Gly717Arg	p.G717R	ENST00000369303	NM_004440.3	717	Gga/Aga					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94066659	94066659	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	439	779	0	ENST00000369303.4:c.1100T>C	p.Ile367Thr	p.I367T	ENST00000369303	NM_004440.3	367	aTa/aCa					NEWRECORD																																																																									
ROS1	6098	MSKCC	GRCh37	6	117638349	117638349	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			649	126	601	0	ENST00000368508.3:c.6092G>A	p.Gly2031Glu	p.G2031E	ENST00000368508	NM_002944.2	2031	gGa/gAa					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	150004511	150004511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			971	220	747	0	ENST00000253339.5:c.1714C>T	p.Pro572Ser	p.P572S	ENST00000253339		572	Cca/Tca					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	161990413	161990413	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	266	467	0	ENST00000366898.1:c.907C>T	p.His303Tyr	p.H303Y	ENST00000366898	NM_004562.2	303	Cac/Tac					NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2958199	2958199	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1254	177	461	0	ENST00000396946.4:c.2533A>C	p.Lys845Gln	p.K845Q	ENST00000396946	NM_032415.4	845	Aaa/Caa					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148513785	148513785	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	165	600	0	ENST00000320356.2:c.1496G>A	p.Arg499Lys	p.R499K	ENST00000320356	NM_004456.4	499	aGg/aAg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151843758	151843758	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	159	467	0	ENST00000262189.6:c.13957C>T	p.Leu4653Phe	p.L4653F	ENST00000262189	NM_170606.2	4653	Ctt/Ttt					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	152012236	152012236	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	179	570	0	ENST00000262189.6:c.577A>G	p.Arg193Gly	p.R193G	ENST00000262189	NM_170606.2	193	Aga/Gga					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55370784	55370784	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	111	203	0	ENST00000297316.4:c.86C>T	p.Pro29Leu	p.P29L	ENST00000297316	NM_022454.3	29	cCc/cTc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8460540	8460540	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			366	114	429	0	ENST00000356435.5:c.3746C>T	p.Pro1249Leu	p.P1249L	ENST00000356435		1249	cCc/cTc					NEWRECORD																																																																									
TGFBR1	0	MSKCC	GRCh37	9	101900270	101900270	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	136	620	0	ENST00000374994.4:c.704C>T	p.Ser235Phe	p.S235F	ENST00000374994	NM_004612.2	235	tCc/tTc					NEWRECORD																																																																									
SUFU	0	MSKCC	GRCh37	10	104268996	104268996	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			941	168	643	0	ENST00000369902.3:c.253C>T	p.Pro85Ser	p.P85S	ENST00000369902	NM_016169.3	85	Ccc/Tcc					NEWRECORD																																																																									
WT1	0	MSKCC	GRCh37	11	32417884	32417884	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			823	202	524	1	ENST00000332351.3:c.1168C>T	p.Pro390Ser	p.P390S	ENST00000332351	NM_024426.4	390	Ccc/Tcc					NEWRECORD																																																																									
BIRC3	0	MSKCC	GRCh37	11	102195526	102195526	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	192	785	0	ENST00000263464.3:c.286G>C	p.Val96Leu	p.V96L	ENST00000263464	NM_001165.4	96	Gtt/Ctt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108186556	108186556	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	108	394	1	ENST00000278616.4:c.6013C>T	p.Leu2005Phe	p.L2005F	ENST00000278616	NM_000051.3	2005	Ctc/Ttc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118342422	118342422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			362	181	516	1	ENST00000534358.1:c.548C>T	p.Ser183Phe	p.S183F	ENST00000534358	NM_005933.3	183	tCt/tTt					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118343042	118343042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	107	305	1	ENST00000534358.1:c.1168G>A	p.Glu390Lys	p.E390K	ENST00000534358	NM_005933.3	390	Gaa/Aaa					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46243968	46243968	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	316	591	1	ENST00000334344.6:c.2062C>T	p.Pro688Ser	p.P688S	ENST00000334344	NM_152641.2	688	Cct/Tct					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57864244	57864244	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1314	286	744	0	ENST00000228682.2:c.1721G>A	p.Gly574Glu	p.G574E	ENST00000228682	NM_005269.2	574	gGa/gAa					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21620099	21620099	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1653	170	492	2	ENST00000382592.4:c.67C>T	p.Arg23Cys	p.R23C	ENST00000382592	NM_014572.2	23	Cgt/Tgt					NEWRECORD																																																																									
MAX	0	MSKCC	GRCh37	14	65543258	65543258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	583	531	0	ENST00000358664.4:c.419C>T	p.Ser140Phe	p.S140F	ENST00000358664	NM_002382.4	140	tCc/tTc					NEWRECORD																																																																									
TSHR	0	MSKCC	GRCh37	14	81610033	81610033	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	286	396	0	ENST00000298171.2:c.1631G>A	p.Gly544Glu	p.G544E	ENST00000298171	NM_000369.2	544	gGg/gAg					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3778341	3778341	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			239	200	278	0	ENST00000262367.5:c.6707G>A	p.Gly2236Glu	p.G2236E	ENST00000262367	NM_004380.2	2236	gGa/gAa					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81934252	81934252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1129	251	582	0	ENST00000359376.3:c.1229G>A	p.Ser410Asn	p.S410N	ENST00000359376	NM_002661.3	410	aGc/aAc					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89357483	89357483	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1681	526	728	0	ENST00000301030.4:c.335C>T	p.Ser112Phe	p.S112F	ENST00000301030	NM_001256183.1	112	tCc/tTc					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38512405	38512405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	180	401	0	ENST00000254066.5:c.1316C>T	p.Pro439Leu	p.P439L	ENST00000254066	NM_000964.3	439	cCc/cTc					NEWRECORD																																																																									
PPM1D	0	MSKCC	GRCh37	17	58711312	58711312	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			795	185	688	0	ENST00000305921.3:c.800C>T	p.Pro267Leu	p.P267L	ENST00000305921	NM_003620.3	267	cCt/cTt					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10250863	10250863	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			810	162	448	0	ENST00000340748.4:c.3617C>T	p.Ser1206Phe	p.S1206F	ENST00000340748		1206	tCc/tTc					NEWRECORD																																																																									
DNMT1	0	MSKCC	GRCh37	19	10259585	10259585	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1347	230	618	2	ENST00000340748.4:c.2647C>T	p.Gln883Ter	p.Q883*	ENST00000340748		883	Cag/Tag					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15296334	15296334	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			886	173	494	0	ENST00000263388.2:c.2108C>T	p.Pro703Leu	p.P703L	ENST00000263388	NM_000435.2	703	cCc/cTc					NEWRECORD																																																																									
NCOA3	0	MSKCC	GRCh37	20	46277849	46277849	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			932	156	612	0	ENST00000371998.3:c.3647C>T	p.Ser1216Phe	p.S1216F	ENST00000371998		1216	tCc/tTc					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52713609	52713633	+	frameshift_variant	Frame_Shift_Del	DEL	TTGGAAAGTCTCCTCCTTTTCCTGC	TTGGAAAGTCTCCTCCTTTTCCTGC	-			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	333	529	0	ENST00000394830.3:c.95_119del	p.Ser32IlefsTer5	p.S32Ifs*5	ENST00000394830	NM_018313.4	32	aGCAGGAAAAGGAGGAGACTTTCCAAt/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7573966	7573976	+	frameshift_variant	Frame_Shift_Del	DEL	TGGGCATCCTT	TGGGCATCCTT	-			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			576	412	567	0	ENST00000269305.4:c.1051_1061del	p.Lys351GlyfsTer27	p.K351Gfs*27	ENST00000269305	NM_001126112.2	351	AAGGATGCCCAg/g					NEWRECORD																																																																									
RPS6KB2	0	MSKCC	GRCh37	11	67197027	67197035	+	inframe_deletion	In_Frame_Del	DEL	CAACTTGGG	CAACTTGGG	-			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			894	214	563	0	ENST00000312629.5:c.273_281del	p.Asn91_Gly93del	p.N91_G93del	ENST00000312629	NM_003952.2	90	acCAACTTGGGc/acc					NEWRECORD																																																																									
JAK1	0	MSKCC	GRCh37	1	65303738	65303739	+	stop_gained	Nonsense_Mutation	DNP	GC	GC	CA			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			794	448	508	0	ENST00000342505.4:c.3016_3017delinsTG	p.Ala1006Ter	p.A1006*	ENST00000342505	NM_002227.2	1006	GCa/TGa					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156843533	156843534	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	204	564	0	ENST00000524377.1:c.959_960delinsTT	p.Ser320Phe	p.S320F	ENST00000524377	NM_002529.3	320	tCC/tTT					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434924	49434925	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	220	341	1	ENST00000301067.7:c.6628_6629delinsTT	p.Pro2210Leu	p.P2210L	ENST00000301067	NM_003482.3	2210	CCg/TTg					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49434925	49434926	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	227	339	0	ENST00000301067.7:c.6627_6628delinsTT	p.Pro2210Ser	p.P2210S	ENST00000301067	NM_003482.3	2209	ccCCcg/ccTTcg					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38510600	38510601	+	missense_variant	Missense_Mutation	DNP	CC	CC	AT			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			904	221	573	0	ENST00000254066.5:c.854_855delinsAT	p.Thr285Asn	p.T285N	ENST00000254066	NM_000964.3	285	aCC/aAT					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2222479	2222480	+	missense_variant	Missense_Mutation	DNP	CC	CC	TT			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			203	171	199	0	ENST00000398665.3:c.3311_3312delinsTT	p.Ser1104Phe	p.S1104F	ENST00000398665	NM_032482.2	1104	tCC/tTT					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9857312	9857313	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010145-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	329	451	0	ENST00000330684.3:c.4088_4089delinsTT	p.Ser1363Phe	p.S1363F	ENST00000330684	NM_001134407.1	1363	tCC/tTT					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0014936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			784	30	478	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209113112	209113112	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			351	28	230	0	ENST00000345146.2:c.395G>A	p.Arg132His	p.R132H	ENST00000345146	NM_005896.2	132	cGt/cAt					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061204	38061204	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	72	409	1	ENST00000250448.2:c.785G>A	p.Arg262His	p.R262H	ENST00000250448	NM_004496.3	262	cGc/cAc					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8115722	8115724	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0014936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			555	42	426	0	ENST00000346208.3:c.1072_1074del	p.Lys358del	p.K358del	ENST00000346208		356	atGAAg/atg					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56168468	56168468	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0014936-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			324	38	172	0	ENST00000399503.3:c.1424G>A	p.Trp475Ter	p.W475*	ENST00000399503	NM_005921.1	475	tGg/tAg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014187-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			819	184	621	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153247289	153247289	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149680468		P-0012623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			616	709	419	0	ENST00000281708.4:c.1513C>T	p.Arg505Cys	p.R505C	ENST00000281708	NM_033632.3	505	Cgc/Tgc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0012623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			639	408	387	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175207	112175207	+	stop_gained	Nonsense_Mutation	SNP	G	G	T	rs121913462		P-0012623-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	192	218	1	ENST00000257430.4:c.3916G>T	p.Glu1306Ter	p.E1306*	ENST00000257430	NM_000038.5	1306	Gaa/Taa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	84	482	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602619	10602619	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			493	143	482	0	ENST00000171111.5:c.959G>A	p.Arg320Gln	p.R320Q	ENST00000171111	NM_203500.1	320	cGg/cAg					NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157100117	157100119	+	inframe_deletion	In_Frame_Del	DEL	GGC	GGC	-	rs1450867853		P-0012458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			60	11	35	0	ENST00000346085.5:c.1069_1071del	p.Gly357del	p.G357del	ENST00000346085	NM_020732.3	352	GGC/-					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220482	1220482	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012458-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			530	116	568	0	ENST00000326873.7:c.575T>A	p.Ile192Asn	p.I192N	ENST00000326873	NM_000455.4	192	aTc/aAc					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106190900	106190900	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			19	259	230	0	ENST00000380013.4:c.4178C>T	p.Thr1393Ile	p.T1393I	ENST00000380013	NM_001127208.2	1393	aCa/aTa					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151921107	151921107	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			33	15	14	0	ENST00000262189.6:c.3316T>A	p.Cys1106Ser	p.C1106S	ENST00000262189	NM_170606.2	1106	Tgt/Agt					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89346162	89346162	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	377	347	0	ENST00000301030.4:c.6788C>G	p.Pro2263Arg	p.P2263R	ENST00000301030	NM_001256183.1	2263	cCc/cGc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593610	55593630	+	inframe_deletion	In_Frame_Del	DEL	TTGTTGAGGAGATAAATGGAA	TTGTTGAGGAGATAAATGGAA	-			P-0010941-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			57	371	534	2	ENST00000288135.5:c.1676_1696del	p.Val559_Asn566delinsAsp	p.V559_N566delinsD	ENST00000288135	NM_000222.2	559	gTTGTTGAGGAGATAAATGGAAac/gac					NEWRECORD																																																																									
RIT1	0	MSKCC	GRCh37	1	155880531	155880531	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			708	485	766	2	ENST00000368323.3:c.22G>C	p.Val8Leu	p.V8L	ENST00000368323	NM_006912.5	8	Gtt/Ctt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89717709	89717713	+	frameshift_variant	Frame_Shift_Del	DEL	AGCCG	AGCCG	-			P-0014685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			135	255	581	0	ENST00000371953.3:c.734_738del	p.Gln245LeufsTer6	p.Q245Lfs*6	ENST00000371953	NM_000314.4	245	cAGCCG/c					NEWRECORD																																																																									
IGF1R	0	MSKCC	GRCh37	15	99251067	99251067	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			360	258	669	0	ENST00000268035.6:c.371A>G	p.Asn124Ser	p.N124S	ENST00000268035	NM_000875.3	124	aAt/aGt					NEWRECORD																																																																									
INPPL1	0	MSKCC	GRCh37	11	71943375	71943393	+	splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GGCTCGGTGAGGGGGCGCC	GGCTCGGTGAGGGGGCGCC	A			P-0014685-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			143	175	636	1	ENST00000298229.2:c.1707_1712+13delinsA		p.X569_splice	ENST00000298229	NM_001567.3	569						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	119	686	0	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
CIC	23152	MSKCC	GRCh37	19	42791719	42791719	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			590	61	500	0	ENST00000575354.2:c.605G>A	p.Arg202Gln	p.R202Q	ENST00000575354	NM_015125.3	202	cGg/cAg					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88420315	88420315	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	49	389	1	ENST00000360948.2:c.2371C>T	p.Arg791Trp	p.R791W	ENST00000360948	NM_001012338.2	791	Cgg/Tgg					NEWRECORD																																																																									
TCF7L2	6934	MSKCC	GRCh37	10	114900984	114900984	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-	rs778855667		P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	188	1024	0	ENST00000543371.1:c.598del	p.Leu200SerfsTer25	p.L200Sfs*25	ENST00000543371	NM_001198531.1	198	caC/ca					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112174835	112174835	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	93	434	3	ENST00000257430.4:c.3544A>T	p.Lys1182Ter	p.K1182*	ENST00000257430	NM_000038.5	1182	Aaa/Taa					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554446	63554446	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	124	533	0	ENST00000307078.5:c.293T>G	p.Phe98Cys	p.F98C	ENST00000307078	NM_004655.3	98	tTc/tGc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175039	112175040	+	frameshift_variant	Frame_Shift_Del	DEL	AA	AA	-			P-0011259-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	31	380	0	ENST00000257430.4:c.3749_3750del	p.Lys1250SerfsTer5	p.K1250Sfs*5	ENST00000257430	NM_000038.5	1250	AAa/a					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1052	163	618	1	ENST00000269305.4:c.814G>A	p.Val272Met	p.V272M	ENST00000269305	NM_001126112.2	272	Gtg/Atg					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9780192	9780192	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1095	123	563	0	ENST00000377346.4:c.1362C>A	p.Asn454Lys	p.N454K	ENST00000377346	NM_005026.3	454	aaC/aaA					NEWRECORD																																																																									
PNRC1	0	MSKCC	GRCh37	6	89791112	89791112	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			107	11	41	0	ENST00000336032.3:c.499C>A	p.Leu167Met	p.L167M	ENST00000336032	NM_006813.2	167	Ctg/Atg					NEWRECORD																																																																									
TNFAIP3	0	MSKCC	GRCh37	6	138200315	138200315	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	122	276	0	ENST00000237289.4:c.1733C>G	p.Ser578Cys	p.S578C	ENST00000237289	NM_001270507.1	578	tCt/tGt					NEWRECORD																																																																									
CD79B	0	MSKCC	GRCh37	17	62009593	62009593	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	271	614	0	ENST00000392795.3:c.29C>A	p.Pro10His	p.P10H	ENST00000392795	NM_001039933.1	10	cCc/cAc					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46738565	46739208	+	splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCCAGAGTCATCCTCATAGAGGCCACATGTGATTCCAACCCTACCCAAGGCATGAACCCTGCATTGTGGAGTCTGTTTACCAGACCCTTTGCTTTGGAAAATTGAACTCATCTTCTGTCCAGCCCATGCTTGATGACCTGGGATGTGTCGACTGTTTGTGAGTGCTTGCATGTACACACGCTCATATACAATGTTGGGCAGGAGGAAAAATAACAAAGAAACCTTGCCTGCTCTGTTATAGCTCCCTTCTTGTTGGGAGAACACATTAGTGAGTGAGATTGTCCATCCATCGTCCCAGATGGCACCGACTATATCCTGTTGGAATTTGGTAGGATGAAGATCAAGCAAGTCTGATGTTGAGGAAGGCCTTTTGGGCTAGGCTTCTAGAGGGAGTTCTAGTGAACACTGAAGTGGAAACTTCAGAAAGCAAAGTATCTGGGTTTTGTTTTGTTTTCTCCCAGATCCAGCTCTAATCTATGATAAGTGTGTGGAAGAGGAGGATGGCTTTGTGGGTGCCTTGGACCTCTTCCCTCCTGGTTACAGCTCTAAGGCCCTGGAGCCCCAGCTGTCAGGTGACCCTTTTCCTACCAGTATTTGGGCTTCTCTAGGAGGAGGGTGGGAGATTTTTTTTTGTGCTAGGGCT	GTCCAGAGTCATCCTCATAGAGGCCACATGTGATTCCAACCCTACCCAAGGCATGAACCCTGCATTGTGGAGTCTGTTTACCAGACCCTTTGCTTTGGAAAATTGAACTCATCTTCTGTCCAGCCCATGCTTGATGACCTGGGATGTGTCGACTGTTTGTGAGTGCTTGCATGTACACACGCTCATATACAATGTTGGGCAGGAGGAAAAATAACAAAGAAACCTTGCCTGCTCTGTTATAGCTCCCTTCTTGTTGGGAGAACACATTAGTGAGTGAGATTGTCCATCCATCGTCCCAGATGGCACCGACTATATCCTGTTGGAATTTGGTAGGATGAAGATCAAGCAAGTCTGATGTTGAGGAAGGCCTTTTGGGCTAGGCTTCTAGAGGGAGTTCTAGTGAACACTGAAGTGGAAACTTCAGAAAGCAAAGTATCTGGGTTTTGTTTTGTTTTCTCCCAGATCCAGCTCTAATCTATGATAAGTGTGTGGAAGAGGAGGATGGCTTTGTGGGTGCCTTGGACCTCTTCCCTCCTGGTTACAGCTCTAAGGCCCTGGAGCCCCAGCTGTCAGGTGACCCTTTTCCTACCAGTATTTGGGCTTCTCTAGGAGGAGGGTGGGAGATTTTTTTTTGTGCTAGGGCT	-			P-0010705-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			176	77	127	0	ENST00000371975.4:c.1375+95_1486+75del		p.X459_splice	ENST00000371975	NM_003579.3	459						NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			849	149	801	0	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27087388	27087397	+	frameshift_variant	Frame_Shift_Del	DEL	AGGAGCTCTG	AGGAGCTCTG	-			P-0013965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	114	813	0	ENST00000324856.7:c.1964_1973del	p.Gly655ValfsTer4	p.G655Vfs*4	ENST00000324856	NM_006015.4	654	gaAGGAGCTCTG/ga					NEWRECORD																																																																									
PAK1	0	MSKCC	GRCh37	11	77054967	77054967	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0013965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	44	643	0	ENST00000356341.3:c.895A>C	p.Lys299Gln	p.K299Q	ENST00000356341	NM_002576.4	299	Aag/Cag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175213	112175213	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			455	43	412	0	ENST00000257430.4:c.3922A>G	p.Lys1308Glu	p.K1308E	ENST00000257430	NM_000038.5	1308	Aaa/Gaa					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116340072	116340072	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	29	465	0	ENST00000397752.3:c.934G>A	p.Glu312Lys	p.E312K	ENST00000397752	NM_000245.2	312	Gaa/Aaa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47684731	47684731	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	46	251	0	ENST00000347630.2:c.718C>T	p.Arg240Ter	p.R240*	ENST00000347630	NM_001007230.1	240	Cga/Tga					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			317	123	401	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc					NEWRECORD																																																																									
E2F3	0	MSKCC	GRCh37	6	20483060	20483060	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			634	110	407	1	ENST00000346618.3:c.793G>A	p.Glu265Lys	p.E265K	ENST00000346618	NM_001949.4	265	Gag/Aag					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5050770	5050770	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			402	72	339	0	ENST00000381652.3:c.553G>T	p.Asp185Tyr	p.D185Y	ENST00000381652	NM_004972.3	185	Gat/Tat					NEWRECORD																																																																									
DIS3	0	MSKCC	GRCh37	13	73337650	73337650	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			336	79	336	0	ENST00000377767.4:c.2066G>A	p.Arg689Gln	p.R689Q	ENST00000377767	NM_014953.3	689	cGa/cAa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			967	191	640	1	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27106354	27106354	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	125	358	0	ENST00000324856.7:c.5965C>T	p.Arg1989Ter	p.R1989*	ENST00000324856	NM_006015.4	1989	Cga/Tga					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	338239	338239	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	104	423	0	ENST00000262320.3:c.2472C>A	p.Phe824Leu	p.F824L	ENST00000262320	NM_003502.3	824	ttC/ttA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578389	7578389	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			319	65	264	0	ENST00000269305.4:c.541C>T	p.Arg181Cys	p.R181C	ENST00000269305	NM_001126112.2	181	Cgc/Tgc					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45374881	45374881	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	75	354	0	ENST00000262160.6:c.962G>A	p.Arg321Gln	p.R321Q	ENST00000262160	NM_005901.5	321	cGa/cAa					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134670615	134670615	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			673	143	522	3	ENST00000398015.3:c.526G>A	p.Ala176Thr	p.A176T	ENST00000398015	NM_004441.4	176	Gct/Act					NEWRECORD																																																																									
CDC73	0	MSKCC	GRCh37	1	193111048	193111048	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	59	268	0	ENST00000367435.3:c.581G>T	p.Arg194Ile	p.R194I	ENST00000367435	NM_024529.4	194	aGa/aTa					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118344036	118344036	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			338	68	309	1	ENST00000534358.1:c.2162G>A	p.Arg721Gln	p.R721Q	ENST00000534358	NM_005933.3	721	cGa/cAa					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41134988	41134988	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			687	112	602	0	ENST00000379561.5:c.640C>T	p.Arg214Cys	p.R214C	ENST00000379561	NM_002015.3	214	Cgt/Tgt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117639416	117639416	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	53	365	0	ENST00000368508.3:c.5941-1G>A		p.X1981_splice	ENST00000368508	NM_002944.2	1981						NEWRECORD																																																																									
PPP6C	0	MSKCC	GRCh37	9	127915952	127915952	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	150	568	2	ENST00000373547.4:c.529C>T	p.Arg177Ter	p.R177*	ENST00000373547	NM_002721.4	177	Cga/Tga					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76940000	76940000	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	86	451	1	ENST00000373344.5:c.748C>T	p.Arg250Ter	p.R250*	ENST00000373344	NM_000489.3	250	Cga/Tga					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6026643	6026643	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			454	92	468	0	ENST00000265849.7:c.1753C>A	p.Leu585Ile	p.L585I	ENST00000265849	NM_000535.5	585	Ctt/Att					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131895051	131895051	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	46	233	0	ENST00000265335.6:c.205G>A	p.Asp69Asn	p.D69N	ENST00000265335		69	Gat/Aat					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32950860	32950860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	163	399	1	ENST00000380152.3:c.8686C>T	p.Arg2896Cys	p.R2896C	ENST00000380152		2896	Cgt/Tgt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49416133	49416133	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			325	73	310	0	ENST00000301067.7:c.16342C>T	p.Arg5448Ter	p.R5448*	ENST00000301067	NM_003482.3	5448	Cga/Tga					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212578349	212578349	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	79	263	1	ENST00000342788.4:c.908C>A	p.Ser303Tyr	p.S303Y	ENST00000342788	NM_005235.2	303	tCt/tAt					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76938406	76938406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			492	110	585	0	ENST00000373344.5:c.2342G>A	p.Arg781Gln	p.R781Q	ENST00000373344	NM_000489.3	781	cGa/cAa					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696704	47696704	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			657	79	417	1	ENST00000347630.2:c.244G>T	p.Asp82Tyr	p.D82Y	ENST00000347630	NM_001007230.1	82	Gat/Tat					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56478817	56478817	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			713	172	496	0	ENST00000267101.3:c.273G>T	p.Met91Ile	p.M91I	ENST00000267101	NM_001982.3	91	atG/atT					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692940	89692940	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			298	56	294	0	ENST00000371953.3:c.424C>T	p.Arg142Trp	p.R142W	ENST00000371953	NM_000314.4	142	Cgg/Tgg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27105736	27105736	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	61	361	0	ENST00000324856.7:c.5347G>T	p.Glu1783Ter	p.E1783*	ENST00000324856	NM_006015.4	1783	Gaa/Taa					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106193889	106193889	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			585	148	333	0	ENST00000380013.4:c.4351C>T	p.Arg1451Trp	p.R1451W	ENST00000380013	NM_001127208.2	1451	Cgg/Tgg					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28609707	28609707	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			497	179	432	0	ENST00000241453.7:c.1522A>C	p.Lys508Gln	p.K508Q	ENST00000241453	NM_004119.2	508	Aaa/Caa					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202137487	202137487	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	230	400	1	ENST00000358485.4:c.715G>T	p.Glu239Ter	p.E239*	ENST00000358485	NM_001080125.1	239	Gaa/Taa					NEWRECORD																																																																									
MSH6	0	MSKCC	GRCh37	2	48027661	48027661	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			96	18	185	0	ENST00000234420.5:c.2539G>T	p.Glu847Ter	p.E847*	ENST00000234420	NM_000179.2	847	Gaa/Taa					NEWRECORD																																																																									
SPEN	0	MSKCC	GRCh37	1	16242628	16242628	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			412	63	324	0	ENST00000375759.3:c.1249G>T	p.Glu417Ter	p.E417*	ENST00000375759	NM_015001.2	417	Gaa/Taa					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023197	27023197	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			498	105	170	0	ENST00000324856.7:c.303G>T	p.Lys101Asn	p.K101N	ENST00000324856	NM_006015.4	101	aaG/aaT					NEWRECORD																																																																									
PIK3R3	0	MSKCC	GRCh37	1	46521644	46521644	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	13	215	0	ENST00000262741.5:c.765-1G>T		p.X255_splice	ENST00000262741	NM_003629.3	255						NEWRECORD																																																																									
BCL10	0	MSKCC	GRCh37	1	85736480	85736480	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			677	137	559	0	ENST00000370580.1:c.167C>A	p.Ser56Tyr	p.S56Y	ENST00000370580	NM_003921.4	56	tCt/tAt					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120464967	120464967	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	82	271	0	ENST00000256646.2:c.5105G>T	p.Arg1702Leu	p.R1702L	ENST00000256646	NM_024408.3	1702	cGa/cTa					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241667422	241667422	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			718	169	534	0	ENST00000366560.3:c.1028G>A	p.Arg343Gln	p.R343Q	ENST00000366560	NM_000143.3	343	cGa/cAa					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243800930	243800930	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			326	51	408	0	ENST00000263826.5:c.544G>T	p.Glu182Ter	p.E182*	ENST00000263826	NM_005465.4	182	Gaa/Taa					NEWRECORD																																																																									
CASP8	0	MSKCC	GRCh37	2	202123005	202123005	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			898	177	432	0	ENST00000358485.4:c.51C>A	p.Phe17Leu	p.F17L	ENST00000358485	NM_001080125.1	17	ttC/ttA					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209116217	209116217	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs201258988		P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			511	38	448	1	ENST00000345146.2:c.59G>A	p.Arg20Gln	p.R20Q	ENST00000345146	NM_005896.2	20	cGa/cAa					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41275649	41275649	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			527	127	338	0	ENST00000349496.5:c.1544G>A	p.Arg515Gln	p.R515Q	ENST00000349496	NM_001904.3	515	cGa/cAa					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47098463	47098463	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			435	138	409	0	ENST00000409792.3:c.6811A>C	p.Ser2271Arg	p.S2271R	ENST00000409792	NM_014159.6	2271	Agt/Cgt					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47164855	47164855	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			387	62	315	0	ENST00000409792.3:c.1271G>A	p.Arg424Gln	p.R424Q	ENST00000409792	NM_014159.6	424	cGa/cAa					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89468462	89468462	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	78	333	0	ENST00000336596.2:c.1996G>T	p.Asp666Tyr	p.D666Y	ENST00000336596	NM_005233.5	666	Gac/Tac					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142212044	142212044	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	116	414	0	ENST00000350721.4:c.6008T>G	p.Met2003Arg	p.M2003R	ENST00000350721	NM_001184.3	2003	aTg/aGg					NEWRECORD																																																																									
MAP3K13	0	MSKCC	GRCh37	3	185161258	185161258	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	127	391	0	ENST00000265026.3:c.685T>G	p.Tyr229Asp	p.Y229D	ENST00000265026	NM_004721.4	229	Tat/Gat					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55133894	55133894	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			380	48	295	1	ENST00000257290.5:c.1107G>T	p.Lys369Asn	p.K369N	ENST00000257290	NM_006206.4	369	aaG/aaT					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66230813	66230813	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			568	104	476	2	ENST00000273854.3:c.2158G>T	p.Asp720Tyr	p.D720Y	ENST00000273854	NM_004439.5	720	Gat/Tat					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66270102	66270102	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	140	362	0	ENST00000273854.3:c.1780C>A	p.Leu594Ile	p.L594I	ENST00000273854	NM_004439.5	594	Ctc/Atc					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66280155	66280155	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			221	41	229	0	ENST00000273854.3:c.1534G>T	p.Glu512Ter	p.E512*	ENST00000273854	NM_004439.5	512	Gag/Tag					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153332670	153332670	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			619	97	564	0	ENST00000281708.4:c.286G>T	p.Glu96Ter	p.E96*	ENST00000281708	NM_033632.3	96	Gaa/Taa					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187630459	187630459	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			675	171	514	2	ENST00000441802.2:c.523G>A	p.Asp175Asn	p.D175N	ENST00000441802	NM_005245.3	175	Gat/Aat					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35871265	35871265	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			275	74	301	0	ENST00000303115.3:c.487T>G	p.Leu163Val	p.L163V	ENST00000303115	NM_002185.3	163	Tta/Gta					NEWRECORD																																																																									
RICTOR	0	MSKCC	GRCh37	5	38978718	38978718	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			406	48	365	0	ENST00000357387.3:c.788G>T	p.Arg263Ile	p.R263I	ENST00000357387	NM_152756.3	263	aGa/aTa					NEWRECORD																																																																									
PLK2	0	MSKCC	GRCh37	5	57751173	57751173	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			477	50	306	0	ENST00000274289.3:c.1694T>G	p.Phe565Cys	p.F565C	ENST00000274289	NM_006622.3	565	tTt/tGt					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131972841	131972841	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			256	36	333	1	ENST00000265335.6:c.3424G>T	p.Glu1142Ter	p.E1142*	ENST00000265335		1142	Gaa/Taa					NEWRECORD																																																																									
HIST1H3H	0	MSKCC	GRCh37	6	27778229	27778229	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1366	229	765	0	ENST00000369163.2:c.378G>T	p.Gln126His	p.Q126H	ENST00000369163	NM_003536.2	126	caG/caT					NEWRECORD																																																																									
HLA-A	0	MSKCC	GRCh37	6	29910556	29910556	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			159	50	58	0	ENST00000376809.5:c.96C>A	p.Phe32Leu	p.F32L	ENST00000376809	NM_002116.7	32	ttC/ttA					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30673344	30673344	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1357	89	699	1	ENST00000376406.3:c.3616G>T	p.Ala1206Ser	p.A1206S	ENST00000376406	NM_014641.2	1206	Gcc/Tcc					NEWRECORD																																																																									
VEGFA	0	MSKCC	GRCh37	6	43749777	43749777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1132	224	507	2	ENST00000523873.1:c.630C>A	p.Asp210Glu	p.D210E	ENST00000523873		210	gaC/gaA					NEWRECORD																																																																									
PNRC1	0	MSKCC	GRCh37	6	89793662	89793662	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	91	383	0	ENST00000336032.3:c.731G>T	p.Arg244Ile	p.R244I	ENST00000336032	NM_006813.2	244	aGa/aTa					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157527367	157527367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	66	375	0	ENST00000346085.5:c.5092C>T	p.Leu1698Phe	p.L1698F	ENST00000346085	NM_020732.3	1698	Ctt/Ttt					NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162206908	162206908	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			466	111	257	0	ENST00000366898.1:c.767G>A	p.Arg256His	p.R256H	ENST00000366898	NM_004562.2	256	cGc/cAc					NEWRECORD																																																																									
JAK2	0	MSKCC	GRCh37	9	5080620	5080620	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			374	76	450	0	ENST00000381652.3:c.2371G>T	p.Glu791Ter	p.E791*	ENST00000381652	NM_004972.3	791	Gaa/Taa					NEWRECORD																																																																									
PAX5	0	MSKCC	GRCh37	9	36966588	36966588	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	186	456	0	ENST00000358127.4:c.738C>A	p.Tyr246Ter	p.Y246*	ENST00000358127	NM_001280556.1	246	taC/taA					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93607788	93607788	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			523	108	429	0	ENST00000375746.1:c.490G>T	p.Glu164Ter	p.E164*	ENST00000375746	NM_001174167.1	164	Gaa/Taa					NEWRECORD																																																																									
GATA3	0	MSKCC	GRCh37	10	8106042	8106042	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			479	132	265	1	ENST00000346208.3:c.862G>A	p.Gly288Arg	p.G288R	ENST00000346208		288	Ggg/Agg					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63850625	63850625	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	56	243	0	ENST00000279873.7:c.1403C>A	p.Ser468Ter	p.S468*	ENST00000279873	NM_032199.2	468	tCa/tAa					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63851837	63851837	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	104	373	0	ENST00000279873.7:c.2615C>T	p.Ser872Phe	p.S872F	ENST00000279873	NM_032199.2	872	tCc/tTc					NEWRECORD																																																																									
TET1	0	MSKCC	GRCh37	10	70412307	70412307	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			539	36	452	2	ENST00000373644.4:c.4417G>A	p.Gly1473Ser	p.G1473S	ENST00000373644	NM_030625.2	1473	Ggt/Agt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624244	89624244	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			123	12	106	0	ENST00000371953.3:c.18A>T	p.Lys6Asn	p.K6N	ENST00000371953	NM_000314.4	6	aaA/aaT					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692978	89692978	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			208	45	262	0	ENST00000371953.3:c.462C>A	p.Phe154Leu	p.F154L	ENST00000371953	NM_000314.4	154	ttC/ttA					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89720826	89720826	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			128	36	166	0	ENST00000371953.3:c.977A>G	p.Asp326Gly	p.D326G	ENST00000371953	NM_000314.4	326	gAc/gGc					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123324046	123324046	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	51	482	1	ENST00000358487.5:c.424G>T	p.Asp142Tyr	p.D142Y	ENST00000358487	NM_000141.4	142	Gat/Tat					NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94192748	94192748	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	32	257	0	ENST00000323929.3:c.1327-1G>T		p.X443_splice	ENST00000323929	NM_005591.3	443						NEWRECORD																																																																									
MRE11A	0	MSKCC	GRCh37	11	94224026	94224026	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			428	94	461	0	ENST00000323929.3:c.126A>C	p.Glu42Asp	p.E42D	ENST00000323929	NM_005591.3	42	gaA/gaC					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102100439	102100439	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			660	101	397	0	ENST00000282441.5:c.1283C>A	p.Thr428Asn	p.T428N	ENST00000282441	NM_001130145.2	428	aCt/aAt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108196812	108196812	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			246	50	302	0	ENST00000278616.4:c.6835A>C	p.Lys2279Gln	p.K2279Q	ENST00000278616	NM_000051.3	2279	Aaa/Caa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108203597	108203597	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	33	202	0	ENST00000278616.4:c.7897T>G	p.Leu2633Val	p.L2633V	ENST00000278616	NM_000051.3	2633	Tta/Gta					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118373954	118373954	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			351	70	368	0	ENST00000534358.1:c.7347T>G	p.Phe2449Leu	p.F2449L	ENST00000534358	NM_005933.3	2449	ttT/ttG					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118374174	118374174	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			510	106	445	0	ENST00000534358.1:c.7567G>A	p.Val2523Ile	p.V2523I	ENST00000534358	NM_005933.3	2523	Gtc/Atc					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118375309	118375309	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			400	27	301	1	ENST00000534358.1:c.8702C>A	p.Ser2901Tyr	p.S2901Y	ENST00000534358	NM_005933.3	2901	tCt/tAt					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18499758	18499758	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	70	202	0	ENST00000266497.5:c.1613C>A	p.Thr538Asn	p.T538N	ENST00000266497		538	aCc/aAc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425403	49425403	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			535	128	453	0	ENST00000301067.7:c.13085C>T	p.Ala4362Val	p.A4362V	ENST00000301067	NM_003482.3	4362	gCt/gTt					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49425643	49425643	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	78	414	0	ENST00000301067.7:c.12845G>A	p.Arg4282Gln	p.R4282Q	ENST00000301067	NM_003482.3	4282	cGa/cAa					NEWRECORD																																																																									
GLI1	0	MSKCC	GRCh37	12	57864466	57864466	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			648	136	503	1	ENST00000228682.2:c.1943G>A	p.Arg648His	p.R648H	ENST00000228682	NM_005269.2	648	cGt/cAt					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115117391	115117391	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			591	91	466	0	ENST00000257566.3:c.783G>T	p.Leu261Phe	p.L261F	ENST00000257566	NM_016569.3	261	ttG/ttT					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115117749	115117749	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			726	106	374	0	ENST00000257566.3:c.686C>T	p.Thr229Met	p.T229M	ENST00000257566	NM_016569.3	229	aCg/aTg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133249857	133249857	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			315	69	305	0	ENST00000320574.5:c.1366G>C	p.Ala456Pro	p.A456P	ENST00000320574	NM_006231.2	456	Gcc/Ccc					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28631550	28631550	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	51	392	1	ENST00000241453.7:c.418G>A	p.Glu140Lys	p.E140K	ENST00000241453	NM_004119.2	140	Gaa/Aaa					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28886141	28886141	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			282	83	336	0	ENST00000282397.4:c.3481A>C	p.Asn1161His	p.N1161H	ENST00000282397	NM_002019.4	1161	Aat/Cat					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	28979966	28979966	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs61763181		P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	82	479	1	ENST00000282397.4:c.1502G>T	p.Arg501Ile	p.R501I	ENST00000282397	NM_002019.4	501	aGa/aTa					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32913407	32913407	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			391	86	604	0	ENST00000380152.3:c.4915G>T	p.Val1639Leu	p.V1639L	ENST00000380152		1639	Gta/Tta					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91337454	91337454	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			226	63	338	0	ENST00000355112.3:c.3077T>C	p.Met1026Thr	p.M1026T	ENST00000355112	NM_000057.2	1026	aTg/aCg					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2134400	2134400	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			566	194	495	0	ENST00000219476.3:c.4177A>G	p.Thr1393Ala	p.T1393A	ENST00000219476	NM_000548.3	1393	Act/Gct					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858310	9858310	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			304	82	299	0	ENST00000330684.3:c.3091G>C	p.Val1031Leu	p.V1031L	ENST00000330684	NM_001134407.1	1031	Gtc/Ctc					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	9858384	9858384	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200526162		P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			371	103	352	1	ENST00000330684.3:c.3017C>T	p.Ala1006Val	p.A1006V	ENST00000330684	NM_001134407.1	1006	gCg/gTg					NEWRECORD																																																																									
SOCS1	0	MSKCC	GRCh37	16	11348706	11348706	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	156	468	0	ENST00000332029.2:c.630G>T	p.Gln210His	p.Q210H	ENST00000332029	NM_003745.1	210	caG/caT					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14022037	14022037	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			300	47	341	0	ENST00000311895.7:c.737C>A	p.Ser246Ter	p.S246*	ENST00000311895	NM_005236.2	246	tCg/tAg					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81888096	81888096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			817	156	558	2	ENST00000359376.3:c.241G>T	p.Asp81Tyr	p.D81Y	ENST00000359376	NM_002661.3	81	Gat/Tat					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89877178	89877178	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	72	328	0	ENST00000389301.3:c.459G>T	p.Gln153His	p.Q153H	ENST00000389301	NM_000135.2	153	caG/caT					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7982843	7982843	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			518	138	411	0	ENST00000399413.3:c.-198+1G>T		p.X66_splice	ENST00000399413		66						NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15964793	15964793	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			773	142	550	1	ENST00000268712.3:c.5803G>A	p.Val1935Met	p.V1935M	ENST00000268712	NM_006311.3	1935	Gtg/Atg					NEWRECORD																																																																									
CDK12	0	MSKCC	GRCh37	17	37650879	37650879	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs191899574		P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	106	431	1	ENST00000447079.4:c.2351G>A	p.Arg784Gln	p.R784Q	ENST00000447079	NM_015083.1	784	cGa/cAa					NEWRECORD																																																																									
STAT3	0	MSKCC	GRCh37	17	40475318	40475318	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1050	65	612	0	ENST00000264657.5:c.1708G>A	p.Asp570Asn	p.D570N	ENST00000264657	NM_139276.2	570	Gac/Aac					NEWRECORD																																																																									
PRKAR1A	0	MSKCC	GRCh37	17	66526499	66526499	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	115	372	1	ENST00000358598.2:c.1055G>A	p.Arg352Gln	p.R352Q	ENST00000358598	NM_212471.2	352	cGa/cAa					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45374862	45374862	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	50	306	0	ENST00000262160.6:c.981G>T	p.Met327Ile	p.M327I	ENST00000262160	NM_005901.5	327	atG/atT					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41763488	41763488	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	159	446	0	ENST00000301178.4:c.2287C>T	p.Arg763Cys	p.R763C	ENST00000301178	NM_021913.4	763	Cgc/Tgc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31383489	31383489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			684	180	432	0	ENST00000328111.2:c.1286G>A	p.Ser429Asn	p.S429N	ENST00000328111	NM_006892.3	429	aGc/aAc					NEWRECORD																																																																									
DNMT3B	0	MSKCC	GRCh37	20	31386388	31386388	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	126	388	0	ENST00000328111.2:c.1613G>A	p.Arg538His	p.R538H	ENST00000328111	NM_006892.3	538	cGc/cAc					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40714491	40714491	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			286	59	250	0	ENST00000373198.4:c.3906C>A	p.Phe1302Leu	p.F1302L	ENST00000373198	NM_133170.3	1302	ttC/ttA					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41385195	41385195	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	126	408	1	ENST00000373198.4:c.766G>T	p.Asp256Tyr	p.D256Y	ENST00000373198	NM_133170.3	256	Gac/Tac					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29106038	29106038	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			233	13	221	0	ENST00000328354.6:c.802C>A	p.Leu268Ile	p.L268I	ENST00000328354	NM_007194.3	268	Ctc/Atc					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47044542	47044542	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			519	97	430	0	ENST00000329236.7:c.1805G>A	p.Arg602Gln	p.R602Q	ENST00000329236	NM_001204466.1	602	cGa/cAa					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70343521	70343521	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			708	183	493	0	ENST00000374080.3:c.1695T>G	p.Ile565Met	p.I565M	ENST00000374080		565	atT/atG					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76845361	76845361	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	42	424	0	ENST00000373344.5:c.6160C>A	p.Leu2054Ile	p.L2054I	ENST00000373344	NM_000489.3	2054	Ctt/Att					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76920255	76920255	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			333	38	442	1	ENST00000373344.5:c.3822G>T	p.Lys1274Asn	p.K1274N	ENST00000373344	NM_000489.3	1274	aaG/aaT					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937173	76937173	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			637	88	624	0	ENST00000373344.5:c.3575G>T	p.Ser1192Ile	p.S1192I	ENST00000373344	NM_000489.3	1192	aGc/aTc					NEWRECORD																																																																									
ATRX	0	MSKCC	GRCh37	X	76937950	76937950	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			330	49	338	1	ENST00000373344.5:c.2798C>A	p.Ser933Tyr	p.S933Y	ENST00000373344	NM_000489.3	933	tCt/tAt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123200277	123200277	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			604	83	459	0	ENST00000218089.9:c.2256C>A	p.Ser752Arg	p.S752R	ENST00000218089	NM_001042749.1	752	agC/agA					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			197	48	641	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108205781	108205781	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	123	490	0	ENST00000278616.4:c.8096C>A	p.Pro2699Gln	p.P2699Q	ENST00000278616	NM_000051.3	2699	cCa/cAa					NEWRECORD																																																																									
CD276	0	MSKCC	GRCh37	15	73996745	73996745	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			234	93	200	0	ENST00000318443.5:c.1301G>A	p.Gly434Asp	p.G434D	ENST00000318443	NM_001024736.1	434	gGc/gAc					NEWRECORD																																																																									
HIST1H3A	0	MSKCC	GRCh37	6	26020916	26020916	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014631-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			399	108	349	0	ENST00000357647.3:c.199C>T	p.Pro67Ser	p.P67S	ENST00000357647	NM_003529.2	67	Cct/Tct					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011030-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			58	216	443	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc					NEWRECORD																																																																									
FOXA1	0	MSKCC	GRCh37	14	38061223	38061228	+	inframe_deletion	In_Frame_Del	DEL	TCTCGA	TCTCGA	-			P-0013660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			468	156	437	0	ENST00000250448.2:c.761_766del	p.Phe254_Asn256delinsTyr	p.F254_N256delinsY	ENST00000250448	NM_004496.3	254	tTCGAGAac/tac					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133202295	133202295	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	150	547	0	ENST00000320574.5:c.6593C>T	p.Ala2198Val	p.A2198V	ENST00000320574	NM_006231.2	2198	gCc/gTc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772316	68772316	+	splice_donor_variant	Splice_Site	SNP	T	T	G			P-0013660-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			297	84	414	0	ENST00000261769.5:c.163+2T>G		p.X55_splice	ENST00000261769	NM_004360.3	55						NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31021115	31021115	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0008057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			1068	255	630	0	ENST00000375687.4:c.1114C>T	p.Gln372Ter	p.Q372*	ENST00000375687	NM_015338.5	372	Cag/Tag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7576862	7576930	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAG	GAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAG	-			P-0008057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			438	255	704	0	ENST00000269305.4:c.920-4_984del		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49416118	49416125	+	frameshift_variant	Frame_Shift_Del	DEL	ACATGTAG	ACATGTAG	-			P-0008057-T02-IM6									Unknown	SOMATIC				MSK-IMPACT			628	210	567	0	ENST00000301067.7:c.16350_16357del	p.Tyr5451ProfsTer5	p.Y5451Pfs*5	ENST00000301067	NM_003482.3	5450	atCTACATGTtc/attc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577108	7577108	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs763098116		P-0013443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			75	777	775	0	ENST00000269305.4:c.830G>T	p.Cys277Phe	p.C277F	ENST00000269305	NM_001126112.2	277	tGt/tTt					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120471597	120471597	+	splice_donor_variant	Splice_Site	SNP	A	A	C			P-0013443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			335	260	393	0	ENST00000256646.2:c.3892+2T>G		p.X1298_splice	ENST00000256646	NM_024408.3	1298						NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66280004	66280004	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0013443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			318	258	379	1	ENST00000273854.3:c.1685T>A	p.Val562Glu	p.V562E	ENST00000273854	NM_004439.5	562	gTg/gAg					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67589646	67589646	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			181	138	224	0	ENST00000274335.5:c.1409A>G	p.Tyr470Cys	p.Y470C	ENST00000274335		470	tAt/tGt					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148523699	148523699	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			334	229	396	0	ENST00000320356.2:c.754C>G	p.Leu252Val	p.L252V	ENST00000320356	NM_004456.4	252	Ctc/Gtc					NEWRECORD																																																																									
CHEK2	0	MSKCC	GRCh37	22	29130484	29130484	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			68	867	680	0	ENST00000328354.6:c.226G>T	p.Glu76Ter	p.E76*	ENST00000328354	NM_007194.3	76	Gag/Tag					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139400221	139400221	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0013443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			66	361	335	0	ENST00000277541.6:c.4127del	p.Gly1376AlafsTer69	p.G1376Afs*69	ENST00000277541	NM_017617.3	1376	gGc/gc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55561847	55561848	+	missense_variant	Missense_Mutation	DNP	GA	GA	CT			P-0013443-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			700	124	571	0	ENST00000288135.5:c.237_238delinsCT	p.Gln79_Asn80delinsHisTyr	p.Q79_N80delinsHY	ENST00000288135	NM_000222.2	79	caGAat/caCTat					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936091	178936091	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs104886003		P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			496	43	264	0	ENST00000263967.3:c.1633G>A	p.Glu545Lys	p.E545K	ENST00000263967	NM_006218.2	545	Gag/Aag					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1024	197	657	0	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140453134	140453134	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			796	238	473	0	ENST00000288602.6:c.1801A>G	p.Lys601Glu	p.K601E	ENST00000288602	NM_004333.4	601	Aaa/Gaa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	119	476	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153258983	153258983	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			970	92	607	1	ENST00000281708.4:c.832C>T	p.Arg278Ter	p.R278*	ENST00000281708	NM_033632.3	278	Cga/Tga					NEWRECORD																																																																									
KDR	0	MSKCC	GRCh37	4	55976872	55976872	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			978	102	572	1	ENST00000263923.4:c.1040G>A	p.Arg347His	p.R347H	ENST00000263923	NM_002253.2	347	cGt/cAt					NEWRECORD																																																																									
ERG	0	MSKCC	GRCh37	21	39817489	39817489	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1100	125	617	0	ENST00000288319.7:c.74C>T	p.Thr25Met	p.T25M	ENST00000288319	NM_182918.3	25	aCg/aTg					NEWRECORD																																																																									
NOTCH4	0	MSKCC	GRCh37	6	32178669	32178669	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			902	178	601	0	ENST00000375023.3:c.2725G>A	p.Asp909Asn	p.D909N	ENST00000375023	NM_004557.3	909	Gac/Aac					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206652336	206652336	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs149219314		P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			990	98	546	1	ENST00000367120.3:c.1043G>A	p.Arg348Gln	p.R348Q	ENST00000367120	NM_014002.3	348	cGa/cAa					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175748	112175754	+	frameshift_variant	Frame_Shift_Del	DEL	ATACTTT	ATACTTT	-			P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	67	418	0	ENST00000257430.4:c.4459_4465del	p.Thr1487TyrfsTer18	p.T1487Yfs*18	ENST00000257430	NM_000038.5	1486	gATACTTTa/ga					NEWRECORD																																																																									
LATS1	0	MSKCC	GRCh37	6	149983307	149983307	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013760-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			907	88	442	0	ENST00000253339.5:c.2951T>G	p.Leu984Arg	p.L984R	ENST00000253339		984	cTt/cGt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3900402	3900402	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0009028-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1126	73	642	3	ENST00000262367.5:c.694C>T	p.Gln232Ter	p.Q232*	ENST00000262367	NM_004380.2	232	Cag/Tag					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441246	52441246	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0009028-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			465	333	658	0	ENST00000460680.1:c.524C>G	p.Pro175Arg	p.P175R	ENST00000460680	NM_004656.3	175	cCt/cGt					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651519	52651519	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0009028-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			612	513	784	0	ENST00000394830.3:c.1577T>C	p.Leu526Ser	p.L526S	ENST00000394830	NM_018313.4	526	tTa/tCa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0010269-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			746	21	606	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0012079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			647	94	484	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46245972	46245972	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			592	88	452	0	ENST00000334344.6:c.4066C>A	p.Pro1356Thr	p.P1356T	ENST00000334344	NM_152641.2	1356	Ccg/Acg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578535	7578535	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	82	480	0	ENST00000269305.4:c.395A>T	p.Lys132Met	p.K132M	ENST00000269305	NM_001126112.2	132	aAg/aTg					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30672932	30672932	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			870	262	906	0	ENST00000376406.3:c.4028C>T	p.Thr1343Ile	p.T1343I	ENST00000376406	NM_014641.2	1343	aCc/aTc					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89816231	89816231	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			748	53	715	0	ENST00000389301.3:c.3146T>C	p.Phe1049Ser	p.F1049S	ENST00000389301	NM_000135.2	1049	tTt/tCt					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	15973634	15973634	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	90	549	0	ENST00000268712.3:c.4358G>C	p.Ser1453Thr	p.S1453T	ENST00000268712	NM_006311.3	1453	aGc/aCc					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010748-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			595	182	484	0	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578263	7578263	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			808	289	566	2	ENST00000269305.4:c.586C>T	p.Arg196Ter	p.R196*	ENST00000269305	NM_001126112.2	196	Cga/Tga					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			679	163	387	1	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45423040	45423040	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			864	258	606	0	ENST00000262160.6:c.88G>A	p.Gly30Arg	p.G30R	ENST00000262160	NM_005901.5	30	Gga/Aga					NEWRECORD																																																																									
TCF7L2	0	MSKCC	GRCh37	10	114925333	114925333	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1290	336	802	2	ENST00000543371.1:c.1411C>T	p.Arg471Cys	p.R471C	ENST00000543371	NM_001198531.1	471	Cgc/Tgc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212426806	212426806	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			480	62	293	0	ENST00000342788.4:c.2309T>A	p.Leu770Gln	p.L770Q	ENST00000342788	NM_005235.2	770	cTg/cAg					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173926	112173926	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	114	320	0	ENST00000257430.4:c.2635C>T	p.Gln879Ter	p.Q879*	ENST00000257430	NM_000038.5	879	Cag/Tag					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153332805	153332805	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1159	133	644	1	ENST00000281708.4:c.151G>T	p.Glu51Ter	p.E51*	ENST00000281708	NM_033632.3	51	Gag/Tag					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149512406	149512406	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs201250234		P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	98	461	0	ENST00000261799.4:c.1034C>T	p.Pro345Leu	p.P345L	ENST00000261799	NM_002609.3	345	cCg/cTg					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148514406	148514406	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1255	186	696	1	ENST00000320356.2:c.1318G>A	p.Ala440Thr	p.A440T	ENST00000320356	NM_004456.4	440	Gct/Act					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153250914	153250916	+	inframe_deletion	In_Frame_Del	DEL	ATG	ATG	-			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	141	407	0	ENST00000281708.4:c.1144_1146del	p.His382del	p.H382del	ENST00000281708	NM_033632.3	382	CAT/-					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175754	112175755	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0010960-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			541	71	341	0	ENST00000257430.4:c.4464_4465del	p.Leu1488PhefsTer25	p.L1488Ffs*25	ENST00000257430	NM_000038.5	1488	tTA/t					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			778	413	316	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0011135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	76	89	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0011135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	76	89	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
CDKN2A	1029	MSKCC	GRCh37	9	21971186	21971186	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913387		P-0011135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			202	76	89	0	ENST00000304494.5:c.172C>T	p.Arg58Ter	p.R58*	ENST00000304494	NM_000077.4	58	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578208	7578219	+	inframe_deletion	In_Frame_Del	DEL	TGTCGAAAAGTG	TGTCGAAAAGTG	-			P-0011135-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	196	452	0	ENST00000269305.4:c.630_641del	p.Thr211_His214del	p.T211_H214del	ENST00000269305	NM_001126112.2	210	aaCACTTTTCGACAt/aat					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55594221	55594221	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			320	222	328	0	ENST00000288135.5:c.1924A>G	p.Lys642Glu	p.K642E	ENST00000288135	NM_000222.2	642	Aaa/Gaa					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64574693	64574693	+	splice_acceptor_variant	Splice_Site	SNP	T	T	C			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			63	290	409	0	ENST00000337652.1:c.799-2A>G		p.X267_splice	ENST00000337652	NM_130803.2	267						NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108236074	108236074	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			73	257	334	0	ENST00000278616.4:c.9010A>G	p.Lys3004Glu	p.K3004E	ENST00000278616	NM_000051.3	3004	Aaa/Gaa					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67654610	67654610	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			334	299	320	0	ENST00000264010.4:c.1097T>A	p.Leu366Ter	p.L366*	ENST00000264010	NM_006565.3	366	tTa/tAa					NEWRECORD																																																																									
ANKRD11	0	MSKCC	GRCh37	16	89337248	89337248	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			364	321	386	0	ENST00000301030.4:c.7783G>C	p.Asp2595His	p.D2595H	ENST00000301030	NM_001256183.1	2595	Gat/Cat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579717	7579717	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			535	273	546	0	ENST00000269305.4:c.79C>G	p.Pro27Ala	p.P27A	ENST00000269305	NM_001126112.2	27	Cct/Gct					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38512270	38512270	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			444	302	480	0	ENST00000254066.5:c.1181G>C	p.Arg394Pro	p.R394P	ENST00000254066	NM_000964.3	394	cGg/cCg					NEWRECORD																																																																									
MSI2	0	MSKCC	GRCh37	17	55478818	55478818	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	258	433	0	ENST00000284073.2:c.391G>C	p.Glu131Gln	p.E131Q	ENST00000284073	NM_138962.2	131	Gag/Cag					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212589798	212589798	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	A			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			259	192	279	0	ENST00000342788.4:c.741+3A>T		p.X247_splice	ENST00000342788	NM_005235.2	247						NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591099	67591099	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			430	146	237	0	ENST00000274335.5:c.1692C>A	p.Asn564Lys	p.N564K	ENST00000274335		564	aaC/aaA					NEWRECORD																																																																									
RAD50	0	MSKCC	GRCh37	5	131973882	131973882	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			483	201	262	0	ENST00000265335.6:c.3585G>C	p.Leu1195Phe	p.L1195F	ENST00000265335		1195	ttG/ttC					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176638705	176638705	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			820	360	522	1	ENST00000439151.2:c.3305G>C	p.Gly1102Ala	p.G1102A	ENST00000439151	NM_022455.4	1102	gGt/gCt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180052974	180052974	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1006	455	751	0	ENST00000261937.6:c.1316G>T	p.Ser439Ile	p.S439I	ENST00000261937	NM_182925.4	439	aGc/aTc					NEWRECORD																																																																									
CCND3	0	MSKCC	GRCh37	6	41909204	41909204	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			524	405	662	2	ENST00000372991.4:c.184T>A	p.Tyr62Asn	p.Y62N	ENST00000372991	NM_001760.3	62	Tac/Aac					NEWRECORD																																																																									
PREX2	0	MSKCC	GRCh37	8	69012035	69012035	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	324	528	0	ENST00000288368.4:c.2672A>G	p.Glu891Gly	p.E891G	ENST00000288368	NM_024870.2	891	gAa/gGa					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47428161	47428161	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			512	432	573	1	ENST00000377045.4:c.1121C>A	p.Thr374Asn	p.T374N	ENST00000377045	NM_001654.4	374	aCc/aAc					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70345222	70345222	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014731-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			308	277	449	0	ENST00000374080.3:c.2248T>G	p.Cys750Gly	p.C750G	ENST00000374080		750	Tgc/Ggc					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419920	152419920	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008910-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			589	294	380	1	ENST00000206249.3:c.1607T>A	p.Leu536His	p.L536H	ENST00000206249	NM_000125.3	536	cTc/cAc					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151842278	151842278	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0008910-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			732	388	475	1	ENST00000262189.6:c.14134G>T	p.Glu4712Ter	p.E4712*	ENST00000262189	NM_170606.2	4712	Gaa/Taa					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118376440	118376446	+	frameshift_variant	Frame_Shift_Del	DEL	ATACTTC	ATACTTC	-			P-0008910-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			264	359	396	0	ENST00000534358.1:c.9835_9841del	p.Thr3279LeufsTer9	p.T3279Lfs*9	ENST00000534358	NM_005933.3	3278	aATACTTCa/aa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16024504	16024504	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014414-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			515	52	503	0	ENST00000268712.3:c.1714C>T	p.Arg572Ter	p.R572*	ENST00000268712	NM_006311.3	572	Cga/Tga					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140481402	140481402	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			922	260	448	0	ENST00000288602.6:c.1406G>C	p.Gly469Ala	p.G469A	ENST00000288602	NM_004333.4	469	gGa/gCa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579373	7579373	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	137	435	0	ENST00000269305.4:c.314G>T	p.Gly105Val	p.G105V	ENST00000269305	NM_001126112.2	105	gGc/gTc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602923	10602923	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1067	138	435	0	ENST00000171111.5:c.655G>A	p.Glu219Lys	p.E219K	ENST00000171111	NM_203500.1	219	Gag/Aag					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52651331	52651331	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1208	155	535	0	ENST00000394830.3:c.1765G>A	p.Asp589Asn	p.D589N	ENST00000394830	NM_018313.4	589	Gac/Aac					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142232402	142232402	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			771	111	412	0	ENST00000350721.4:c.4582C>G	p.Leu1528Val	p.L1528V	ENST00000350721	NM_001184.3	1528	Ctt/Gtt					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117724308	117724308	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			873	54	356	0	ENST00000368508.3:c.571C>T	p.His191Tyr	p.H191Y	ENST00000368508	NM_002944.2	191	Cat/Tat					NEWRECORD																																																																									
NF2	0	MSKCC	GRCh37	22	30032739	30032739	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			874	121	324	0	ENST00000338641.4:c.115-1G>C		p.X39_splice	ENST00000338641	NM_000268.3	39						NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41551043	41551043	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1479	189	561	0	ENST00000263253.7:c.3187G>T	p.Glu1063Ter	p.E1063*	ENST00000263253	NM_001429.3	1063	Gag/Tag					NEWRECORD																																																																									
TSC1	0	MSKCC	GRCh37	9	135781328	135781329	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0012001-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2081	251	865	0	ENST00000298552.3:c.1636_1637delGA	p.Asp546HisfsTer17	p.D546Hfs*17	ENST00000298552	NM_001162426.1	546	GAc/c					NEWRECORD																																																																									
ERBB3	2065	MSKCC	GRCh37	12	56492633	56492633	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	201	254	0	ENST00000267101.3:c.2783A>G	p.Glu928Gly	p.E928G	ENST00000267101	NM_001982.3	928	gAg/gGg					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106523505	106523505	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	23	151	0	ENST00000359195.3:c.2657C>T	p.Thr886Met	p.T886M	ENST00000359195	NM_002649.2	886	aCg/aTg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578272	7578272	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010326-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			241	321	272	0	ENST00000269305.4:c.577C>T	p.His193Tyr	p.H193Y	ENST00000269305	NM_001126112.2	193	Cat/Tat					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711893	89711893	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			513	73	418	0	ENST00000371953.3:c.511C>T	p.Gln171Ter	p.Q171*	ENST00000371953	NM_000314.4	171	Cag/Tag					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916938	178916940	+	inframe_deletion	In_Frame_Del	DEL	GAA	GAA	-			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			972	122	894	0	ENST00000263967.3:c.328_330del	p.Glu110del	p.E110del	ENST00000263967	NM_006218.2	109	GAA/-					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10274042	10274042	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	94	657	0	ENST00000330684.3:c.227G>A	p.Arg76His	p.R76H	ENST00000330684	NM_001134407.1	76	cGc/cAc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692883	89692883	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			287	39	258	0	ENST00000371953.3:c.367C>T	p.His123Tyr	p.H123Y	ENST00000371953	NM_000314.4	123	Cac/Tac					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108216572	108216572	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			709	74	579	0	ENST00000278616.4:c.8521G>A	p.Asp2841Asn	p.D2841N	ENST00000278616	NM_000051.3	2841	Gat/Aat					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21557673	21557673	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			820	53	730	1	ENST00000382592.4:c.2172C>A	p.Asp724Glu	p.D724E	ENST00000382592	NM_014572.2	724	gaC/gaA					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12032510	12032510	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	63	333	1	ENST00000353533.5:c.946C>T	p.Gln316Ter	p.Q316*	ENST00000353533	NM_003010.3	316	Caa/Taa					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5229561	5229561	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012396-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	28	203	0	ENST00000357368.4:c.2290G>C	p.Glu764Gln	p.E764Q	ENST00000357368	NM_002850.3	764	Gag/Cag					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55593620	55593664	+	inframe_deletion	In_Frame_Del	DEL	GATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTTCC	GATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTTCC	-			P-0014295-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			385	144	496	0	ENST00000288135.5:c.1686_1730del	p.Glu562_Pro577delinsAsp	p.E562_P577delinsD	ENST00000288135	NM_000222.2	562	gaGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTTCCt/gat					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0012442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	168	440	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578190	7578190	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012442-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			792	126	641	0	ENST00000269305.4:c.659A>G	p.Tyr220Cys	p.Y220C	ENST00000269305	NM_001126112.2	220	tAt/tGt					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108160489	108160489	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012582-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			168	63	516	0	ENST00000278616.4:c.4397G>C	p.Arg1466Pro	p.R1466P	ENST00000278616	NM_000051.3	1466	cGa/cCa					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36934759	36934759	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	T			P-0012582-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			336	49	1002	0	ENST00000361632.4:c.1574T>A	p.Met525Lys	p.M525K	ENST00000361632		525	aTg/aAg					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61717863	61717863	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012582-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			401	36	830	0	ENST00000401558.2:c.1936G>C	p.Asp646His	p.D646H	ENST00000401558	NM_003400.3	646	Gat/Cat					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220437325	220437325	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012582-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			327	52	1154	1	ENST00000243786.2:c.229G>A	p.Glu77Lys	p.E77K	ENST00000243786	NM_002191.3	77	Gag/Aag					NEWRECORD																																																																									
AURKA	0	MSKCC	GRCh37	20	54961354	54961354	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012582-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			240	37	499	0	ENST00000312783.6:c.278A>G	p.Asn93Ser	p.N93S	ENST00000312783	NM_198436.1	93	aAt/aGt					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153250922	153250922	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012582-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			183	33	489	0	ENST00000281708.4:c.1138G>A	p.Asp380Asn	p.D380N	ENST00000281708	NM_033632.3	380	Gat/Aat					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145742025	145742025	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012582-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			223	44	654	0	ENST00000428558.2:c.478C>G	p.Pro160Ala	p.P160A	ENST00000428558	NM_004260.3	160	Cca/Gca					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411540	63411540	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012582-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			389	45	1231	2	ENST00000330258.3:c.1627G>A	p.Glu543Lys	p.E543K	ENST00000330258	NM_152424.3	543	Gag/Aag					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70342445	70342445	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012582-T03-IM5									Unknown	SOMATIC				MSK-IMPACT			356	23	848	0	ENST00000374080.3:c.1336G>A	p.Glu446Lys	p.E446K	ENST00000374080		446	Gaa/Aaa					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	66	337	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	66	337	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	66	337	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	41961630	41961630	+	stop_gained	Nonsense_Mutation	SNP	A	A	T			P-0014077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			638	198	932	1	ENST00000219905.7:c.538A>T	p.Lys180Ter	p.K180*	ENST00000219905	NM_001164273.1	180	Aaa/Taa					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2223478	2223478	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			271	55	287	0	ENST00000398665.3:c.3589A>T	p.Ser1197Cys	p.S1197C	ENST00000398665	NM_032482.2	1197	Agt/Tgt					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41527428	41527428	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			690	315	739	0	ENST00000263253.7:c.1319C>G	p.Pro440Arg	p.P440R	ENST00000263253	NM_001429.3	440	cCt/cGt					NEWRECORD																																																																									
IL7R	0	MSKCC	GRCh37	5	35861090	35861090	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	A	A	G			P-0014077-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			532	194	408	0	ENST00000303115.3:c.219A>G	p.Ile73Met	p.I73M	ENST00000303115	NM_002185.3	73	atA/atG					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578212	7578212	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1423	46	827	1	ENST00000269305.4:c.637C>T	p.Arg213Ter	p.R213*	ENST00000269305	NM_001126112.2	213	Cga/Tga					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952007	178952007	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			676	24	484	0	ENST00000263967.3:c.3062A>G	p.Tyr1021Cys	p.Y1021C	ENST00000263967	NM_006218.2	1021	tAc/tGc					NEWRECORD																																																																									
BCL6	604	MSKCC	GRCh37	3	187443345	187443345	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			868	36	461	1	ENST00000232014.4:c.1781G>A	p.Arg594Gln	p.R594Q	ENST00000232014	NM_001130845.1	594	cGa/cAa					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133253184	133253184	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1045	45	593	0	ENST00000320574.5:c.857C>G	p.Pro286Arg	p.P286R	ENST00000320574	NM_006231.2	286	cCt/cGt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916876	178916876	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913287		P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			864	27	645	0	ENST00000263967.3:c.263G>A	p.Arg88Gln	p.R88Q	ENST00000263967	NM_006218.2	88	cGa/cAa					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78428511	78428511	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			658	36	557	0	ENST00000370768.2:c.1288C>T	p.Arg430Cys	p.R430C	ENST00000370768	NM_003902.3	430	Cgt/Tgt					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29677227	29677227	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			439	30	355	0	ENST00000358273.4:c.7348C>T	p.Arg2450Ter	p.R2450*	ENST00000358273	NM_001042492.2	2450	Cga/Tga					NEWRECORD																																																																									
IDH1	0	MSKCC	GRCh37	2	209101857	209101857	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			696	39	610	0	ENST00000345146.2:c.1191C>A	p.Phe397Leu	p.F397L	ENST00000345146	NM_005896.2	397	ttC/ttA					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11184573	11184573	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1034	27	564	2	ENST00000361445.4:c.6644C>A	p.Ser2215Tyr	p.S2215Y	ENST00000361445	NM_004958.3	2215	tCt/tAt					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61715367	61715367	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			574	24	555	1	ENST00000401558.2:c.2246G>A	p.Arg749Gln	p.R749Q	ENST00000401558	NM_003400.3	749	cGa/cAa					NEWRECORD																																																																									
RICTOR	253260	MSKCC	GRCh37	5	38950648	38950648	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs776074870		P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			509	15	334	0	ENST00000357387.3:c.3302C>T	p.Ser1101Leu	p.S1101L	ENST00000357387	NM_152756.3	1101	tCg/tTg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29012441	29012441	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs55974987		P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			833	44	622	0	ENST00000282397.4:c.430G>A	p.Glu144Lys	p.E144K	ENST00000282397	NM_002019.4	144	Gaa/Aaa					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108203625	108203625	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			237	18	232	0	ENST00000278616.4:c.7925G>T	p.Arg2642Ile	p.R2642I	ENST00000278616	NM_000051.3	2642	aGa/aTa					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55569904	55569904	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			266	17	248	0	ENST00000288135.5:c.771G>T	p.Glu257Asp	p.E257D	ENST00000288135	NM_000222.2	257	gaG/gaT					NEWRECORD																																																																									
MSH3	4437	MSKCC	GRCh37	5	80064749	80064749	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs148896355		P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			540	31	580	0	ENST00000265081.6:c.2180G>A	p.Arg727Gln	p.R727Q	ENST00000265081	NM_002439.4	727	cGa/cAa					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86648999	86648999	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			468	28	445	0	ENST00000274376.6:c.1279C>T	p.Arg427Ter	p.R427*	ENST00000274376	NM_002890.2	427	Cga/Tga					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123205043	123205043	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014528-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			529	36	479	0	ENST00000218089.9:c.2403G>T	p.Gln801His	p.Q801H	ENST00000218089	NM_001042749.1	801	caG/caT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578457	7578457	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013062-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			749	88	440	2	ENST00000269305.4:c.473G>A	p.Arg158His	p.R158H	ENST00000269305	NM_001126112.2	158	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578403	7578403	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			284	477	547	0	ENST00000269305.4:c.527G>T	p.Cys176Phe	p.C176F	ENST00000269305	NM_001126112.2	176	tGc/tTc					NEWRECORD																																																																									
FGFR2	0	MSKCC	GRCh37	10	123279677	123279677	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			246	172	264	0	ENST00000358487.5:c.755C>G	p.Ser252Trp	p.S252W	ENST00000358487	NM_000141.4	252	tCg/tGg					NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43623558	43623558	+	splice_acceptor_variant	Splice_Site	SNP	A	A	T			P-0014561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			343	78	308	0	ENST00000355710.3:c.3188-2A>T		p.X1063_splice	ENST00000355710	NM_020975.4	1063						NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72993405	72993405	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			366	594	733	0	ENST00000268489.5:c.640G>A	p.Ala214Thr	p.A214T	ENST00000268489	NM_006885.3	214	Gct/Act					NEWRECORD																																																																									
GATA1	0	MSKCC	GRCh37	X	48650447	48650447	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1056	248	842	0	ENST00000376670.3:c.417G>T	p.Glu139Asp	p.E139D	ENST00000376670	NM_002049.3	139	gaG/gaT					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70352271	70352271	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014561-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1064	74	624	0	ENST00000374080.3:c.4298C>A	p.Ala1433Asp	p.A1433D	ENST00000374080		1433	gCt/gAt					NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18573957	18573957	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0014732-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			395	53	240	0	ENST00000266497.5:c.2275C>T	p.Gln759Ter	p.Q759*	ENST00000266497		759	Cag/Tag					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0012551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			528	249	278	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295250	1295250	+	upstream_gene_variant	5'Flank	SNP	G	G	A			P-0012551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			388	272	273	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9538374	9538374	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			346	299	249	0	ENST00000353224.5:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000353224	NM_177990.2	542	Gaa/Aaa					NEWRECORD																																																																									
MAP2K1	0	MSKCC	GRCh37	15	66727443	66727443	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			418	334	369	0	ENST00000307102.5:c.159T>A	p.Phe53Leu	p.F53L	ENST00000307102	NM_002755.3	53	ttT/ttA					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	29474031	29474031	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			720	180	428	0	ENST00000389048.3:c.2144G>A	p.Gly715Glu	p.G715E	ENST00000389048	NM_004304.4	715	gGg/gAg					NEWRECORD																																																																									
FLT1	0	MSKCC	GRCh37	13	29041725	29041725	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			393	637	283	0	ENST00000282397.4:c.94C>T	p.Pro32Ser	p.P32S	ENST00000282397	NM_002019.4	32	Cct/Tct					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120465049	120465049	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			372	26	265	0	ENST00000256646.2:c.5023C>T	p.Arg1675Cys	p.R1675C	ENST00000256646	NM_024408.3	1675	Cgc/Tgc					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180039607	180039607	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			78	346	445	0	ENST00000261937.6:c.3436C>G	p.Arg1146Gly	p.R1146G	ENST00000261937	NM_182925.4	1146	Cgc/Ggc					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518190	8518190	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			243	178	321	1	ENST00000356435.5:c.1201C>T	p.Arg401Trp	p.R401W	ENST00000356435		401	Cgg/Tgg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29587390	29587390	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			367	259	294	0	ENST00000358273.4:c.4434T>A	p.Phe1478Leu	p.F1478L	ENST00000358273	NM_001042492.2	1478	ttT/ttA					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78599548	78599548	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			481	268	392	0	ENST00000306801.3:c.220G>A	p.Asp74Asn	p.D74N	ENST00000306801	NM_020761.2	74	Gat/Aat					NEWRECORD																																																																									
BTK	0	MSKCC	GRCh37	X	100609658	100609658	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012551-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			608	278	616	0	ENST00000308731.7:c.1591G>A	p.Asp531Asn	p.D531N	ENST00000308731	NM_000061.2	531	Gat/Aat					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156834199	156834199	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			553	342	409	0	ENST00000524377.1:c.266G>A	p.Gly89Asp	p.G89D	ENST00000524377	NM_002529.3	89	gGc/gAc					NEWRECORD																																																																									
IL10	0	MSKCC	GRCh37	1	206942015	206942015	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	169	456	0	ENST00000423557.1:c.503T>C	p.Ile168Thr	p.I168T	ENST00000423557	NM_000572.2	168	aTa/aCa					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562949	21562949	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			456	121	295	2	ENST00000382592.4:c.970G>A	p.Ala324Thr	p.A324T	ENST00000382592	NM_014572.2	324	Gcg/Acg					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20156723	20156723	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0012786-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	199	528	0	ENST00000379607.5:c.34A>G	p.Arg12Gly	p.R12G	ENST00000379607	NM_001412.3	12	Aga/Gga					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013451-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			101	147	126	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187540161	187540161	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013451-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			521	470	546	0	ENST00000441802.2:c.7579G>A	p.Val2527Ile	p.V2527I	ENST00000441802	NM_005245.3	2527	Gtt/Att					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49935532	49935532	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0013451-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			818	748	852	0	ENST00000296474.3:c.1832T>G	p.Val611Gly	p.V611G	ENST00000296474	NM_002447.2	611	gTg/gGg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70340971	70340971	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013451-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			47	477	600	0	ENST00000374080.3:c.704A>G	p.Tyr235Cys	p.Y235C	ENST00000374080		235	tAc/tGc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			490	76	402	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64573765	64573765	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012210-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			312	41	425	1	ENST00000337652.1:c.1003C>T	p.Arg335Cys	p.R335C	ENST00000337652	NM_130803.2	335	Cgc/Tgc					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80409488	80409488	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	51	229	0	ENST00000286548.4:c.626A>C	p.Gln209Pro	p.Q209P	ENST00000286548	NM_002072.3	209	cAa/cCa					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20159749	20159749	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0010449-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			768	132	533	0	ENST00000379607.5:c.10A>T	p.Asn4Tyr	p.N4Y	ENST00000379607	NM_001412.3	4	Aat/Tat					NEWRECORD																																																																									
FGF3	0	MSKCC	GRCh37	11	69631129	69631129	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013348-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			354	112	695	1	ENST00000334134.2:c.283C>T	p.Arg95Trp	p.R95W	ENST00000334134	NM_005247.2	95	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	328	406	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	41419986	41419986	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	71	543	1	ENST00000373198.4:c.335G>A	p.Arg112His	p.R112H	ENST00000373198	NM_133170.3	112	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577124	7577124	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			370	232	602	0	ENST00000269305.4:c.814G>T	p.Val272Leu	p.V272L	ENST00000269305	NM_001126112.2	272	Gtg/Ttg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266052	41266052	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			750	116	424	0	ENST00000349496.5:c.49G>T	p.Asp17Tyr	p.D17Y	ENST00000349496	NM_001904.3	17	Gac/Tac					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52438494	52438494	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			411	87	604	0	ENST00000460680.1:c.1225G>C	p.Val409Leu	p.V409L	ENST00000460680	NM_004656.3	409	Gtg/Ctg					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81388082	81388082	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			923	76	518	0	ENST00000222390.5:c.293G>T	p.Trp98Leu	p.W98L	ENST00000222390	NM_000601.4	98	tGg/tTg					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133226089	133226089	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			363	44	501	0	ENST00000320574.5:c.3808G>C	p.Val1270Leu	p.V1270L	ENST00000320574	NM_006231.2	1270	Gtc/Ctc					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89836617	89836617	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			327	71	409	0	ENST00000389301.3:c.2273T>C	p.Leu758Pro	p.L758P	ENST00000389301	NM_000135.2	758	cTc/cCc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29556874	29556874	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			422	73	334	0	ENST00000358273.4:c.2872A>T	p.Thr958Ser	p.T958S	ENST00000358273	NM_001042492.2	958	Act/Tct					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41243776	41243776	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			561	89	584	0	ENST00000357654.3:c.3772G>T	p.Glu1258Ter	p.E1258*	ENST00000357654	NM_007294.3	1258	Gag/Tag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32910466	32910503	+	frameshift_variant	Frame_Shift_Del	DEL	CTTAACTAGCTCTTTTGGGACAATTCTGAGGAAATGTT	CTTAACTAGCTCTTTTGGGACAATTCTGAGGAAATGTT	-			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1295	134	713	0	ENST00000380152.3:c.1976_2013del	p.Leu659Ter	p.L659*	ENST00000380152		658	tcCTTAACTAGCTCTTTTGGGACAATTCTGAGGAAATGTTct/tcct					NEWRECORD																																																																									
FOXO1	0	MSKCC	GRCh37	13	41240025	41240061	+	frameshift_variant	Frame_Shift_Del	DEL	CCCCGCACAGCCCCCCGGTGGCGGCCGCGGCGGCCGC	CCCCGCACAGCCCCCCGGTGGCGGCCGCGGCGGCCGC	-			P-0011044-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			51	20	21	0	ENST00000379561.5:c.289_325del	p.Ala97ThrfsTer224	p.A97Tfs*224	ENST00000379561	NM_002015.3	97	GCGGCCGCCGCGGCCGCCACCGGGGGGCTGTGCGGGGac/ac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			745	241	354	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266107	41266107	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	57	396	0	ENST00000349496.5:c.104T>G	p.Ile35Ser	p.I35S	ENST00000349496	NM_001904.3	35	aTc/aGc					NEWRECORD																																																																									
EIF1AX	0	MSKCC	GRCh37	X	20159754	20159754	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			806	70	337	0	ENST00000379607.5:c.5C>T	p.Pro2Leu	p.P2L	ENST00000379607	NM_001412.3	2	cCc/cTc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27058075	27058075	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			423	41	117	0	ENST00000324856.7:c.1783C>T	p.Gln595Ter	p.Q595*	ENST00000324856	NM_006015.4	595	Cag/Tag					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55602890	55602890	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			753	264	294	2	ENST00000288135.5:c.2600G>T	p.Ser867Ile	p.S867I	ENST00000288135	NM_000222.2	867	aGc/aTc					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7977052	7977052	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			730	80	364	0	ENST00000319144.4:c.1678G>T	p.Val560Leu	p.V560L	ENST00000319144	NM_001139.2	560	Gtg/Ttg					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29667647	29667647	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1238	98	419	1	ENST00000358273.4:c.7046G>A	p.Arg2349His	p.R2349H	ENST00000358273	NM_001042492.2	2349	cGt/cAt					NEWRECORD																																																																									
SF3B1	0	MSKCC	GRCh37	2	198267388	198267399	+	inframe_deletion	In_Frame_Del	DEL	ACTTCTTGCTTT	ACTTCTTGCTTT	-			P-0010986-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1252	87	458	0	ENST00000335508.6:c.1958_1969del	p.Lys653_Ser657delinsThr	p.K653_S657delinsT	ENST00000335508	NM_012433.2	653	aAAAGCAAGAAGTcc/acc					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89690802	89690802	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0011091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			147	150	158	0	ENST00000371953.3:c.210-1G>C		p.X70_splice	ENST00000371953	NM_000314.4	70						NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93607720	93607720	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			556	288	277	0	ENST00000375746.1:c.422A>G	p.Gln141Arg	p.Q141R	ENST00000375746	NM_001174167.1	141	cAg/cGg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1207176	1207176	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0011091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			432	422	368	0	ENST00000326873.7:c.267del	p.Asn90ThrfsTer6	p.N90Tfs*6	ENST00000326873	NM_000455.4	88	atC/at					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47028845	47028845	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0011091-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			258	606	240	0	ENST00000329236.7:c.149del	p.Ser50ThrfsTer35	p.S50Tfs*35	ENST00000329236	NM_001204466.1	50	aGc/ac					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0011178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			772	242	378	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120484336	120484337	+	frameshift_variant	Frame_Shift_Del	DEL	TA	TA	-			P-0011178-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			655	234	368	6	ENST00000256646.2:c.2793_2794del	p.Thr932PhefsTer13	p.T932Ffs*13	ENST00000256646	NM_024408.3	931	aaTAct/aact					NEWRECORD																																																																									
KDM5A	0	MSKCC	GRCh37	12	431665	431665	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			625	180	374	0	ENST00000399788.2:c.2344C>T	p.Arg782Ter	p.R782*	ENST00000399788	NM_001042603.1	782	Cga/Tga					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40353860	40353860	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1615	500	739	1	ENST00000293328.3:c.2260G>A	p.Asp754Asn	p.D754N	ENST00000293328	NM_012448.3	754	Gat/Aat					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30732963	30732963	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	190	235	0	ENST00000359013.4:c.1651G>A	p.Glu551Lys	p.E551K	ENST00000359013	NM_001024847.2	551	Gag/Aag					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55210131	55210131	+	splice_donor_variant	Splice_Site	SNP	G	G	T			P-0010320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			531	186	361	0	ENST00000275493.2:c.240+1G>T		p.X80_splice	ENST00000275493	NM_005228.3	80						NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42059011	42059011	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1119	403	815	0	ENST00000219905.7:c.8731G>C	p.Glu2911Gln	p.E2911Q	ENST00000219905	NM_001164273.1	2911	Gag/Cag					NEWRECORD																																																																									
FANCA	0	MSKCC	GRCh37	16	89836332	89836332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	205	307	0	ENST00000389301.3:c.2417C>T	p.Pro806Leu	p.P806L	ENST00000389301	NM_000135.2	806	cCt/cTt					NEWRECORD																																																																									
EGFR	0	MSKCC	GRCh37	7	55209986	55209993	+	frameshift_variant	Frame_Shift_Del	DEL	AGGCACGA	AGGCACGA	C			P-0010320-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			596	198	409	0	ENST00000275493.2:c.96_103delinsC	p.Gln32HisfsTer46	p.Q32Hfs*46	ENST00000275493	NM_005228.3	32	caAGGCACGAgt/caCgt					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952085	178952088	+	missense_variant	Missense_Mutation	ONP	ATCA	ATCA	GTCG			P-0012006-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	121	274	0	ENST00000263967.3:c.3140_3143delinsGTCG	p.His1047_His1048delinsArgArg	p.H1047_H1048delinsRR	ENST00000263967	NM_006218.2	1047	cATCAt/cGTCGt					NEWRECORD																																																																									
SMARCA4	0	MSKCC	GRCh37	19	11143994	11143994	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			452	128	359	2	ENST00000344626.4:c.3575G>A	p.Arg1192His	p.R1192H	ENST00000344626	NM_003072.3	1192	cGc/cAc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	14	414	2	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
ROS1	0	MSKCC	GRCh37	6	117665426	117665426	+	splice_acceptor_variant	Splice_Site	SNP	C	C	T			P-0012677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	84	206	0	ENST00000368508.3:c.4322-1G>A		p.X1441_splice	ENST00000368508	NM_002944.2	1441						NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78857609	78857609	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			420	132	340	0	ENST00000306801.3:c.1679C>A	p.Ala560Asp	p.A560D	ENST00000306801	NM_020761.2	560	gCc/gAc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48575174	48575174	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	175	318	0	ENST00000342988.3:c.368G>C	p.Cys123Ser	p.C123S	ENST00000342988	NM_005359.5	123	tGt/tCt					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53225235	53225235	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	G	G	A			P-0012677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			206	119	213	0	ENST00000375401.3:c.2983C>T	p.Gln995Ter	p.Q995*	ENST00000375401	NM_004187.3	995	Cag/Tag					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10183703	10183734	+	frameshift_variant	Frame_Shift_Del	DEL	CGGCCGCGGCCCGTGCTGCGCTCGGTGAACTC	CGGCCGCGGCCCGTGCTGCGCTCGGTGAACTC	-			P-0012677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			324	193	336	0	ENST00000256474.2:c.172_203del	p.Arg58AlafsTer63	p.R58Afs*63	ENST00000256474	NM_000551.3	58	CGGCCGCGGCCCGTGCTGCGCTCGGTGAACTCg/g					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89692897	89692897	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012677-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			436	222	188	0	ENST00000371953.3:c.383del	p.Lys128ArgfsTer6	p.K128Rfs*6	ENST00000371953	NM_000314.4	127	ggA/gg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			554	56	247	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	112015637	112015637	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0010362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1314	71	668	0	ENST00000368678.4:c.1205A>G	p.Lys402Arg	p.K402R	ENST00000368678		402	aAg/aGg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1220706	1220706	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010362-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			504	41	257	0	ENST00000326873.7:c.724G>T	p.Gly242Trp	p.G242W	ENST00000326873	NM_000455.4	242	Ggg/Tgg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			622	231	439	0	ENST00000269305.4:c.733G>A	p.Gly245Ser	p.G245S	ENST00000269305	NM_001126112.2	245	Ggc/Agc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112128143	112128143	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T	rs62619935		P-0010751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			187	30	282	1	ENST00000257430.4:c.646C>T	p.Arg216Ter	p.R216*	ENST00000257430	NM_000038.5	216	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175171	112175171	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	12	148	0	ENST00000257430.4:c.3880C>T	p.Gln1294Ter	p.Q1294*	ENST00000257430	NM_000038.5	1294	Cag/Tag					NEWRECORD																																																																									
JUN	0	MSKCC	GRCh37	1	59248514	59248514	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0010751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			865	106	400	0	ENST00000371222.2:c.229G>T	p.Glu77Ter	p.E77*	ENST00000371222	NM_002228.3	77	Gag/Tag					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911379	32911379	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0010751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			313	54	718	0	ENST00000380152.3:c.2887A>G	p.Ile963Val	p.I963V	ENST00000380152		963	Ata/Gta					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120351	70120351	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0010751-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1537	375	853	0	ENST00000245479.2:c.1353C>G	p.Tyr451Ter	p.Y451*	ENST00000245479	NM_000346.3	451	taC/taG					NEWRECORD																																																																									
HIST1H3B	0	MSKCC	GRCh37	6	26031919	26031919	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0005078-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			1098	64	498	0	ENST00000244661.2:c.370G>A	p.Asp124Asn	p.D124N	ENST00000244661	NM_003537.3	124	Gac/Aac					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72845934	72845934	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0005078-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			673	80	412	0	ENST00000268489.5:c.3533C>A	p.Ser1178Ter	p.S1178*	ENST00000268489	NM_006885.3	1178	tCg/tAg					NEWRECORD																																																																									
MLL	0	MSKCC	GRCh37	11	118359429	118359431	+	inframe_deletion	In_Frame_Del	DEL	GTT	GTT	-			P-0005078-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			818	59	352	0	ENST00000534358.1:c.4434_4436del	p.Cys1479del	p.C1479del	ENST00000534358	NM_005933.3	1478	cGTTgc/cgc					NEWRECORD																																																																									
RYBP	0	MSKCC	GRCh37	3	72428569	72428569	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0005078-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			422	36	175	0	ENST00000477973.2:c.433del	p.Ile146SerfsTer62	p.I146Sfs*62	ENST00000477973	NM_012234.5	145	cgG/cg					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178921553	178921553	+	missense_variant	Missense_Mutation	SNP	T	T	A	rs121913284		P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			413	287	250	0	ENST00000263967.3:c.1035T>A	p.Asn345Lys	p.N345K	ENST00000263967	NM_006218.2	345	aaT/aaA					NEWRECORD																																																																									
ESR1	0	MSKCC	GRCh37	6	152419923	152419923	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	209	391	0	ENST00000206249.3:c.1610A>C	p.Tyr537Ser	p.Y537S	ENST00000206249	NM_000125.3	537	tAt/tCt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			116	267	343	0	ENST00000269305.4:c.535C>T	p.His179Tyr	p.H179Y	ENST00000269305	NM_001126112.2	179	Cat/Tat					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66189908	66189908	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			767	145	424	0	ENST00000273854.3:c.3038T>G	p.Val1013Gly	p.V1013G	ENST00000273854	NM_004439.5	1013	gTc/gGc					NEWRECORD																																																																									
PDGFRB	0	MSKCC	GRCh37	5	149512490	149512490	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			94	341	179	0	ENST00000261799.4:c.950G>A	p.Arg317Gln	p.R317Q	ENST00000261799	NM_002609.3	317	cGg/cAg					NEWRECORD																																																																									
CD274	0	MSKCC	GRCh37	9	5462929	5462929	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			848	62	379	0	ENST00000381577.3:c.490G>C	p.Glu164Gln	p.E164Q	ENST00000381577	NM_014143.3	164	Gaa/Caa					NEWRECORD																																																																									
BCL2L11	0	MSKCC	GRCh37	2	111921722	111921750	+	frameshift_variant	Frame_Shift_Del	DEL	AATTACCAAGCAGCCGAAGACCACCCACG	AATTACCAAGCAGCCGAAGACCACCCACG	-			P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	186	471	0	ENST00000393256.3:c.514_542del	p.Tyr172GlyfsTer83	p.Y172Gfs*83	ENST00000393256	NM_006538.4	171	AATTACCAAGCAGCCGAAGACCACCCACGa/a					NEWRECORD																																																																									
CD274	0	MSKCC	GRCh37	9	5463021	5463035	+	inframe_deletion	In_Frame_Del	DEL	CAGCACACTGAGAAT	CAGCACACTGAGAAT	-			P-0010933-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			809	43	381	0	ENST00000381577.3:c.584_598del	p.Ser195_Ile199del	p.S195_I199del	ENST00000381577	NM_014143.3	194	acCAGCACACTGAGAATc/acc					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0012624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			536	197	279	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696643	47696643	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			833	192	450	0	ENST00000347630.2:c.305T>G	p.Phe102Cys	p.F102C	ENST00000347630	NM_001007230.1	102	tTc/tGc					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11227497	11227497	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0012624-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1012	222	483	0	ENST00000361445.4:c.4329+2T>A		p.X1443_splice	ENST00000361445	NM_004958.3	1443						NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139390684	139390684	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			714	40	722	0	ENST00000277541.6:c.7507C>T	p.Gln2503Ter	p.Q2503*	ENST00000277541	NM_017617.3	2503	Cag/Tag					NEWRECORD																																																																									
ID3	0	MSKCC	GRCh37	1	23885836	23885836	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			361	59	342	0	ENST00000374561.5:c.82C>G	p.Arg28Gly	p.R28G	ENST00000374561	NM_002167.4	28	Cga/Gga					NEWRECORD																																																																									
NOTCH2	0	MSKCC	GRCh37	1	120458436	120458436	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0014847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			460	56	448	1	ENST00000256646.2:c.6909delC	p.Ile2304LeufsTer2	p.I2304Lfs*2	ENST00000256646	NM_024408.3	2303	ccC/cc					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106524612	106524612	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014847-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			168	33	260	0	ENST00000359195.3:c.2773G>T	p.Val925Leu	p.V925L	ENST00000359195	NM_002649.2	925	Gtg/Ttg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			472	131	645	1	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577018	7577018	+	splice_donor_variant	Splice_Site	SNP	C	C	T			P-0013899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			524	163	672	0	ENST00000269305.4:c.919+1G>A		p.X307_splice	ENST00000269305	NM_001126112.2	307						NEWRECORD																																																																									
RET	0	MSKCC	GRCh37	10	43608369	43608369	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	82	1236	1	ENST00000355710.3:c.1717G>T	p.Val573Leu	p.V573L	ENST00000355710	NM_020975.4	573	Gtg/Ttg					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56492817	56492817	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0013899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			419	120	676	0	ENST00000407977.2:c.122del	p.Ser41Ter	p.S41*	ENST00000407977		41	tCa/ta					NEWRECORD																																																																									
PIK3C3	0	MSKCC	GRCh37	18	39584467	39584467	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			405	59	683	0	ENST00000262039.4:c.1132C>T	p.Arg378Cys	p.R378C	ENST00000262039	NM_002647.2	378	Cgt/Tgt					NEWRECORD																																																																									
MET	0	MSKCC	GRCh37	7	116339566	116339566	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs35469582		P-0013899-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			340	35	433	0	ENST00000397752.3:c.428G>A	p.Arg143Gln	p.R143Q	ENST00000397752	NM_000245.2	143	cGa/cAa					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0010575-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			305	172	382	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29665752	29665755	+	frameshift_variant	Frame_Shift_Del	DEL	ACTT	ACTT	-			P-0010575-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			355	238	575	0	ENST00000358273.4:c.6852_6855delTTAC	p.Tyr2285ThrfsTer5	p.Y2285Tfs*5	ENST00000358273	NM_001042492.2	2284	ACTTac/ac					NEWRECORD																																																																									
MAP2K4	0	MSKCC	GRCh37	17	12016549	12016549	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0010575-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			224	169	386	0	ENST00000353533.5:c.686-1G>T		p.X229_splice	ENST00000353533	NM_003010.3	229						NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577114	7577114	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1021	306	761	0	ENST00000269305.4:c.824G>T	p.Cys275Phe	p.C275F	ENST00000269305	NM_001126112.2	275	tGt/tTt					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81381485	81381485	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1139	118	918	0	ENST00000222390.5:c.576C>A	p.Ser192Arg	p.S192R	ENST00000222390	NM_000601.4	192	agC/agA					NEWRECORD																																																																									
SOX9	0	MSKCC	GRCh37	17	70120035	70120035	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			83	16	53	0	ENST00000245479.2:c.1037C>G	p.Pro346Arg	p.P346R	ENST00000245479	NM_000346.3	346	cCg/cGg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15289710	15289710	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1014	517	741	0	ENST00000263388.2:c.3761C>A	p.Pro1254Gln	p.P1254Q	ENST00000263388	NM_000435.2	1254	cCa/cAa					NEWRECORD																																																																									
CRLF2	0	MSKCC	GRCh37	X	1314932	1314932	+	downstream_gene_variant	3'Flank	SNP	C	C	A			P-0013182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1016	366	783	0				ENST00000381566								NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			384	205	715	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46246164	46246164	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			469	106	577	3	ENST00000334344.6:c.4258G>T	p.Val1420Leu	p.V1420L	ENST00000334344	NM_152641.2	1420	Gta/Tta					NEWRECORD																																																																									
FYN	0	MSKCC	GRCh37	6	112015636	112015636	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			534	91	534	0	ENST00000368678.4:c.1206G>T	p.Lys402Asn	p.K402N	ENST00000368678		402	aaG/aaT					NEWRECORD																																																																									
PREX2	0	MSKCC	GRCh37	8	68982086	68982086	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			725	87	925	0	ENST00000288368.4:c.1460G>T	p.Cys487Phe	p.C487F	ENST00000288368	NM_024870.2	487	tGt/tTt					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70356308	70356308	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014413-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			631	139	741	1	ENST00000374080.3:c.5203C>A	p.Arg1735Ser	p.R1735S	ENST00000374080		1735	Cgc/Agc					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0013966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	54	463	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
MTOR	0	MSKCC	GRCh37	1	11210198	11210198	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			852	97	675	1	ENST00000361445.4:c.4555G>A	p.Ala1519Thr	p.A1519T	ENST00000361445	NM_004958.3	1519	Gct/Act					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47162383	47162388	+	frameshift_variant	Frame_Shift_Del	DEL	CCATCC	CCATCC	AT			P-0013966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			586	51	412	2	ENST00000409792.3:c.3738_3743delinsAT	p.Asp1247SerfsTer11	p.D1247Sfs*11	ENST00000409792	NM_014159.6	1246	gtGGATGGc/gtATc					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47165164	47165164	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0013966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			653	68	472	0	ENST00000409792.3:c.962C>G	p.Ser321Ter	p.S321*	ENST00000409792	NM_014159.6	321	tCa/tGa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0014612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			840	107	852	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
MYCL1	0	MSKCC	GRCh37	1	40363211	40363211	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0014612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	69	755	0	ENST00000397332.2:c.1018A>T	p.Thr340Ser	p.T340S	ENST00000397332	NM_001033082.2	340	Acc/Tcc					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243716140	243716140	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			985	86	940	0	ENST00000263826.5:c.1054G>A	p.Glu352Lys	p.E352K	ENST00000263826	NM_005465.4	352	Gag/Aag					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3900833	3900833	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			641	79	760	0	ENST00000262367.5:c.263A>C	p.Asn88Thr	p.N88T	ENST00000262367	NM_004380.2	88	aAt/aCt					NEWRECORD																																																																									
RBM10	0	MSKCC	GRCh37	X	47032566	47032566	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014612-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			372	92	510	0	ENST00000329236.7:c.241G>T	p.Glu81Ter	p.E81*	ENST00000329236	NM_001204466.1	81	Gag/Tag					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52662939	52662939	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			124	63	603	0	ENST00000394830.3:c.1414C>T	p.Arg472Ter	p.R472*	ENST00000394830	NM_018313.4	472	Cga/Tga					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186506988	186506988	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			184	199	1148	0	ENST00000323963.5:c.1154T>C	p.Leu385Pro	p.L385P	ENST00000323963		385	cTt/cCt					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139400256	139400256	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			225	77	282	0	ENST00000277541.6:c.4092C>G	p.Ile1364Met	p.I1364M	ENST00000277541	NM_017617.3	1364	atC/atG					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53227814	53227814	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			229	208	352	0	ENST00000375401.3:c.2374G>T	p.Glu792Ter	p.E792*	ENST00000375401	NM_004187.3	792	Gaa/Taa					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53253929	53253929	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			332	40	370	0	ENST00000375401.3:c.143C>A	p.Pro48Gln	p.P48Q	ENST00000375401	NM_004187.3	48	cCa/cAa					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191511	10191516	+	inframe_deletion	In_Frame_Del	DEL	CCTAGT	CCTAGT	-			P-0011097-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			191	156	446	0	ENST00000256474.2:c.505_510del	p.Leu169_Val170del	p.L169_V170del	ENST00000256474	NM_000551.3	168	agCCTAGTc/agc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			142	385	365	2	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61719472	61719472	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			594	30	379	0	ENST00000401558.2:c.1711G>A	p.Glu571Lys	p.E571K	ENST00000401558	NM_003400.3	571	Gaa/Aaa					NEWRECORD																																																																									
CSF3R	0	MSKCC	GRCh37	1	36938264	36938264	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs150616658		P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			632	377	891	2	ENST00000361632.4:c.697C>T	p.Arg233Trp	p.R233W	ENST00000361632		233	Cgg/Tgg					NEWRECORD																																																																									
DNMT3A	0	MSKCC	GRCh37	2	25497944	25497944	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			429	151	358	1	ENST00000264709.3:c.505C>T	p.Arg169Trp	p.R169W	ENST00000264709	NM_175629.2	169	Cgg/Tgg					NEWRECORD																																																																									
MLL3	0	MSKCC	GRCh37	7	151880241	151880241	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	T			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			643	36	276	0	ENST00000262189.6:c.5083C>A	p.Gln1695Lys	p.Q1695K	ENST00000262189	NM_170606.2	1695	Caa/Aaa					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49437704	49437704	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			322	916	972	1	ENST00000301067.7:c.5266C>T	p.Arg1756Trp	p.R1756W	ENST00000301067	NM_003482.3	1756	Cgg/Tgg					NEWRECORD																																																																									
ERCC4	0	MSKCC	GRCh37	16	14029258	14029258	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			715	257	550	2	ENST00000311895.7:c.1469G>A	p.Arg490Gln	p.R490Q	ENST00000311895	NM_005236.2	490	cGg/cAg					NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70352238	70352238	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1270	326	789	0	ENST00000374080.3:c.4265G>A	p.Arg1422His	p.R1422H	ENST00000374080		1422	cGc/cAc					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266065	41266100	+	inframe_deletion	In_Frame_Del	DEL	CTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACT	CTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACT	-			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			230	325	599	0	ENST00000349496.5:c.65_100del	p.Val22_Ser33del	p.V22_S33del	ENST00000349496	NM_001904.3	21	gCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTct/gct					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56171121	56171127	+	frameshift_variant	Frame_Shift_Del	DEL	TGTACGT	TGTACGT	-			P-0012728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			307	111	360	0	ENST00000399503.3:c.1951_1957del	p.Tyr651LeufsTer3	p.Y651Lfs*3	ENST00000399503	NM_005921.1	650	gTGTACGTt/gt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121912656		P-0010994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			270	556	593	0	ENST00000269305.4:c.734G>T	p.Gly245Val	p.G245V	ENST00000269305	NM_001126112.2	245	gGc/gTc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89521675	89521675	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	239	538	0	ENST00000336596.2:c.2752G>A	p.Asp918Asn	p.D918N	ENST00000336596	NM_005233.5	918	Gac/Aac					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139396503	139396503	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1099	197	683	1	ENST00000277541.6:c.5422G>T	p.Asp1808Tyr	p.D1808Y	ENST00000277541	NM_017617.3	1808	Gac/Tac					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123179144	123179144	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010994-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			264	587	653	1	ENST00000218089.9:c.593A>T	p.Asp198Val	p.D198V	ENST00000218089	NM_001042749.1	198	gAt/gTt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			758	219	393	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578413	7578413	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs876660754		P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			296	187	242	0	ENST00000269305.4:c.517G>T	p.Val173Leu	p.V173L	ENST00000269305	NM_001126112.2	173	Gtg/Ttg					NEWRECORD																																																																									
SHQ1	0	MSKCC	GRCh37	3	72890348	72890348	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			626	115	277	0	ENST00000325599.8:c.334G>T	p.Ala112Ser	p.A112S	ENST00000325599	NM_018130.2	112	Gct/Tct					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89445001	89445001	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			760	146	409	0	ENST00000336596.2:c.1321C>A	p.Leu441Met	p.L441M	ENST00000336596	NM_005233.5	441	Ctg/Atg					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189587134	189587134	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			860	159	341	0	ENST00000264731.3:c.1151G>A	p.Gly384Asp	p.G384D	ENST00000264731	NM_003722.4	384	gGt/gAt					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180038480	180038480	+	splice_acceptor_variant	Splice_Site	SNP	C	C	A			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			421	67	273	0	ENST00000261937.6:c.3538-1G>T		p.X1180_splice	ENST00000261937	NM_182925.4	1180						NEWRECORD																																																																									
PARK2	0	MSKCC	GRCh37	6	162683669	162683669	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			434	275	331	0	ENST00000366898.1:c.300G>C	p.Gln100His	p.Q100H	ENST00000366898	NM_004562.2	100	caG/caC					NEWRECORD																																																																									
HGF	0	MSKCC	GRCh37	7	81399248	81399248	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			582	317	338	0	ENST00000222390.5:c.40C>G	p.His14Asp	p.H14D	ENST00000222390	NM_000601.4	14	Cat/Gat					NEWRECORD																																																																									
KLF4	0	MSKCC	GRCh37	9	110250167	110250167	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			303	93	207	0	ENST00000374672.4:c.508G>T	p.Gly170Cys	p.G170C	ENST00000374672	NM_004235.4	170	Ggc/Tgc					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41737201	41737201	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			805	328	382	1	ENST00000301178.4:c.781C>T	p.Gln261Ter	p.Q261*	ENST00000301178	NM_021913.4	261	Cag/Tag					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63409815	63409815	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			890	154	431	0	ENST00000330258.3:c.3352G>C	p.Ala1118Pro	p.A1118P	ENST00000330258	NM_152424.3	1118	Gcc/Ccc					NEWRECORD																																																																									
GPS2	2874	MSKCC	GRCh37	17	7217651	7217651	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1027	74	523	0	ENST00000380728.2:c.276del	p.Val93PhefsTer16	p.V93Ffs*16	ENST00000380728		92	aaA/aa					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8340439	8340439	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012059-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			712	209	343	0	ENST00000356435.5:c.5157del	p.Leu1721TrpfsTer19	p.L1721Wfs*19	ENST00000356435		1719	ggG/gg					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952072	178952072	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1141	24	689	0	ENST00000263967.3:c.3127A>G	p.Met1043Val	p.M1043V	ENST00000263967	NM_006218.2	1043	Atg/Gtg					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37881332	37881332	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013680-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1232	34	715	0	ENST00000269571.5:c.2524G>A	p.Val842Ile	p.V842I	ENST00000269571		842	Gta/Ata					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012837-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			644	90	454	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	338190	338190	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			245	13	851	1	ENST00000262320.3:c.2521C>T	p.Arg841Ter	p.R841*	ENST00000262320	NM_003502.3	841	Cga/Tga					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17945970	17945970	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	11	824	1	ENST00000458235.1:c.1969C>T	p.Arg657Trp	p.R657W	ENST00000458235	NM_000215.3	657	Cgg/Tgg					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12037394	12037394	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014992-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			428	58	678	0	ENST00000396373.4:c.1025G>A	p.Trp342Ter	p.W342*	ENST00000396373	NM_001987.4	342	tGg/tAg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs121913530		P-0013821-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			832	82	498	0	ENST00000256078.4:c.34G>C	p.Gly12Arg	p.G12R	ENST00000256078	NM_033360.2	12	Ggt/Cgt					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711899	89711899	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			618	195	462	1	ENST00000371953.3:c.517C>T	p.Arg173Cys	p.R173C	ENST00000371953	NM_000314.4	173	Cgc/Tgc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	318	301	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	318	301	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971111	21971111	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			699	318	301	0	ENST00000304494.5:c.247C>T	p.His83Tyr	p.H83Y	ENST00000304494	NM_000077.4	83	Cac/Tac					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59761014	59761017	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0010102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1176	286	684	0	ENST00000259008.2:c.3390_3393delCTAT	p.Tyr1131LeufsTer18	p.Y1131Lfs*18	ENST00000259008	NM_032043.2	1130	atCTAT/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			850	364	677	1	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc					NEWRECORD																																																																									
MST1R	0	MSKCC	GRCh37	3	49927457	49927457	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1724	306	875	0	ENST00000296474.3:c.3847C>T	p.Arg1283Trp	p.R1283W	ENST00000296474	NM_002447.2	1283	Cgg/Tgg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5244392	5244392	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010102-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	152	516	0	ENST00000357368.4:c.1090G>A	p.Val364Ile	p.V364I	ENST00000357368	NM_002850.3	364	Gtc/Atc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			704	77	488	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
PIK3CD	0	MSKCC	GRCh37	1	9770524	9770524	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			935	63	611	1	ENST00000377346.4:c.11G>T	p.Gly4Val	p.G4V	ENST00000377346	NM_005026.3	4	gGg/gTg					NEWRECORD																																																																									
ALK	0	MSKCC	GRCh37	2	30143171	30143171	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	26	359	0	ENST00000389048.3:c.355G>A	p.Glu119Lys	p.E119K	ENST00000389048	NM_004304.4	119	Gag/Aag					NEWRECORD																																																																									
CSF1R	0	MSKCC	GRCh37	5	149447873	149447873	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			963	68	728	1	ENST00000286301.3:c.1531G>T	p.Asp511Tyr	p.D511Y	ENST00000286301	NM_005211.3	511	Gat/Tat					NEWRECORD																																																																									
FLT3	0	MSKCC	GRCh37	13	28597539	28597539	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1059	91	699	0	ENST00000241453.7:c.2366T>C	p.Leu789Pro	p.L789P	ENST00000241453	NM_004119.2	789	cTt/cCt					NEWRECORD																																																																									
IRS2	0	MSKCC	GRCh37	13	110434777	110434777	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			613	68	489	0	ENST00000375856.3:c.3624G>T	p.Gln1208His	p.Q1208H	ENST00000375856	NM_003749.2	1208	caG/caT					NEWRECORD																																																																									
PLCG2	0	MSKCC	GRCh37	16	81934260	81934260	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			937	91	699	0	ENST00000359376.3:c.1237C>A	p.Gln413Lys	p.Q413K	ENST00000359376	NM_002661.3	413	Caa/Aaa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112162	115112163	+	missense_variant	Missense_Mutation	DNP	GG	GG	AT			P-0013233-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			682	58	502	0	ENST00000257566.3:c.1577_1578delinsAT	p.Ala526Asp	p.A526D	ENST00000257566	NM_016569.3	526	gCC/gAT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578524	7578524	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			515	268	360	1	ENST00000269305.4:c.406C>T	p.Gln136Ter	p.Q136*	ENST00000269305	NM_001126112.2	136	Caa/Taa					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	48941741	48941741	+	splice_donor_variant	Splice_Site	SNP	T	T	C			P-0010849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			197	61	230	0	ENST00000267163.4:c.1049+2T>C		p.X350_splice	ENST00000267163	NM_000321.2	350						NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41523605	41523605	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010849-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			540	203	385	0	ENST00000263253.7:c.1021C>T	p.Gln341Ter	p.Q341*	ENST00000263253	NM_001429.3	341	Cag/Tag					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59761014	59761017	+	frameshift_variant	Frame_Shift_Del	DEL	ATAG	ATAG	-			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1082	392	727	0	ENST00000259008.2:c.3390_3393delCTAT	p.Tyr1131LeufsTer18	p.Y1131Lfs*18	ENST00000259008	NM_032043.2	1130	atCTAT/at					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577099	7577099	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	219	750	0	ENST00000269305.4:c.839G>C	p.Arg280Thr	p.R280T	ENST00000269305	NM_001126112.2	280	aGa/aCa					NEWRECORD																																																																									
SMAD2	0	MSKCC	GRCh37	18	45375002	45375002	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			235	283	514	0	ENST00000262160.6:c.841G>A	p.Glu281Lys	p.E281K	ENST00000262160	NM_005901.5	281	Gaa/Aaa					NEWRECORD																																																																									
FLT4	0	MSKCC	GRCh37	5	180043904	180043904	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs56082504		P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			962	495	888	3	ENST00000261937.6:c.3092G>A	p.Arg1031Gln	p.R1031Q	ENST00000261937	NM_182925.4	1031	cGa/cAa					NEWRECORD																																																																									
EPHA7	0	MSKCC	GRCh37	6	94120666	94120666	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1211	628	1149	0	ENST00000369303.4:c.385G>A	p.Glu129Lys	p.E129K	ENST00000369303	NM_004440.3	129	Gaa/Aaa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41572904	41572904	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			620	455	674	0	ENST00000263253.7:c.5189C>T	p.Ser1730Phe	p.S1730F	ENST00000263253	NM_001429.3	1730	tCt/tTt					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56495393	56495393	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			939	472	815	3	ENST00000267101.3:c.3583G>A	p.Glu1195Lys	p.E1195K	ENST00000267101	NM_001982.3	1195	Gag/Aag					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56495402	56495402	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			955	463	815	2	ENST00000267101.3:c.3592G>A	p.Glu1198Lys	p.E1198K	ENST00000267101	NM_001982.3	1198	Gaa/Aaa					NEWRECORD																																																																									
DICER1	0	MSKCC	GRCh37	14	95562856	95562856	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			507	125	410	0	ENST00000343455.3:c.4401C>G	p.Ile1467Met	p.I1467M	ENST00000343455	NM_177438.2	1467	atC/atG					NEWRECORD																																																																									
PALB2	0	MSKCC	GRCh37	16	23646702	23646702	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			952	168	641	0	ENST00000261584.4:c.1165C>G	p.Leu389Val	p.L389V	ENST00000261584	NM_024675.3	389	Ctt/Gtt					NEWRECORD																																																																									
CIC	0	MSKCC	GRCh37	19	42796511	42796511	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			714	177	533	0	ENST00000575354.2:c.3068C>T	p.Ser1023Phe	p.S1023F	ENST00000575354	NM_015125.3	1023	tCc/tTc					NEWRECORD																																																																									
MYD88	0	MSKCC	GRCh37	3	38182057	38182057	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	G	G	C			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			550	277	482	0	ENST00000396334.3:c.681G>C	p.Lys227Asn	p.K227N	ENST00000396334	NM_002468.4	227	aaG/aaC					NEWRECORD																																																																									
SHQ1	0	MSKCC	GRCh37	3	72890276	72890276	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1102	172	711	2	ENST00000325599.8:c.406G>T	p.Glu136Ter	p.E136*	ENST00000325599	NM_018130.2	136	Gag/Tag					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178951979	178951979	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			685	344	571	0	ENST00000263967.3:c.3034G>C	p.Glu1012Gln	p.E1012Q	ENST00000263967	NM_006218.2	1012	Gaa/Caa					NEWRECORD																																																																									
MDC1	0	MSKCC	GRCh37	6	30680869	30680869	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1620	172	1135	0	ENST00000376406.3:c.850C>G	p.Pro284Ala	p.P284A	ENST00000376406	NM_014641.2	284	Cca/Gca					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6031610	6031610	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			392	80	259	0	ENST00000265849.7:c.982G>A	p.Asp328Asn	p.D328N	ENST00000265849	NM_000535.5	328	Gat/Aat					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55152093	55152093	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0014452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			760	348	500	0	ENST00000257290.5:c.2525A>T	p.Asp842Val	p.D842V	ENST00000257290	NM_006206.4	842	gAc/gTc					NEWRECORD																																																																									
MLL4	0	MSKCC	GRCh37	19	36219933	36219933	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014452-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			763	365	457	2	ENST00000222270.7:c.4735C>T	p.Arg1579Cys	p.R1579C	ENST00000222270	NM_014727.1	1579	Cgt/Tgt					NEWRECORD																																																																									
GNA11	0	MSKCC	GRCh37	19	3118942	3118942	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			598	456	439	1	ENST00000078429.4:c.626A>T	p.Gln209Leu	p.Q209L	ENST00000078429	NM_002067.2	209	cAg/cTg					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52441255	52441258	+	frameshift_variant	Frame_Shift_Del	DEL	CTGA	CTGA	-			P-0010614-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			204	370	385	0	ENST00000460680.1:c.512_515del	p.Val171AlafsTer15	p.V171Afs*15	ENST00000460680	NM_004656.3	171	gTCAGc/gc					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	165	250	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
MED12	0	MSKCC	GRCh37	X	70339253	70339253	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	421	346	0	ENST00000374080.3:c.130G>A	p.Gly44Ser	p.G44S	ENST00000374080		44	Ggt/Agt					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3788617	3788617	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1235	154	638	0	ENST00000262367.5:c.4337G>A	p.Arg1446His	p.R1446H	ENST00000262367	NM_004380.2	1446	cGc/cAc					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	628	263	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971029	21971029	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			514	628	263	0	ENST00000304494.5:c.329G>A	p.Trp110Ter	p.W110*	ENST00000304494	NM_000077.4	110	tGg/tAg					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187534473	187534473	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	220	323	3	ENST00000441802.2:c.9253delC	p.Asp3086IlefsTer30	p.D3086Ifs*30	ENST00000441802	NM_005245.3	3085	Ctt/tt					NEWRECORD																																																																									
STAG2	0	MSKCC	GRCh37	X	123182858	123182858	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			444	287	271	0	ENST00000218089.9:c.823C>T	p.Gln275Ter	p.Q275*	ENST00000218089	NM_001042749.1	275	Cag/Tag					NEWRECORD																																																																									
BARD1	0	MSKCC	GRCh37	2	215610563	215610563	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			946	102	442	1	ENST00000260947.4:c.1693C>A	p.Arg565Ser	p.R565S	ENST00000260947	NM_000465.2	565	Cgt/Agt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66467968	66467968	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			731	187	449	0	ENST00000273854.3:c.301G>T	p.Val101Leu	p.V101L	ENST00000273854	NM_004439.5	101	Gta/Tta					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108224531	108224531	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			837	250	472	0	ENST00000278616.4:c.8710G>C	p.Glu2904Gln	p.E2904Q	ENST00000278616	NM_000051.3	2904	Gag/Cag					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435294	49435294	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			693	205	349	0	ENST00000301067.7:c.6259C>T	p.Gln2087Ter	p.Q2087*	ENST00000301067	NM_003482.3	2087	Cag/Tag					NEWRECORD																																																																									
TRAF7	0	MSKCC	GRCh37	16	2222339	2222339	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	141	502	0	ENST00000326181.6:c.623G>A	p.Arg208Gln	p.R208Q	ENST00000326181	NM_032271.2	208	cGa/cAa					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41533772	41533772	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	286	510	0	ENST00000263253.7:c.1738C>T	p.Arg580Ter	p.R580*	ENST00000263253	NM_001429.3	580	Cga/Tga					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435702	49435708	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	GGTAGGG	GGTAGGG	-			P-0010236-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1317	146	509	0	ENST00000301067.7:c.6175_6181del	p.Pro2059CysfsTer33	p.P2059Cfs*33	ENST00000301067	NM_003482.3	2059	CCCTACCtg/tg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7579536	7579536	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0012089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			361	120	395	2	ENST00000269305.4:c.151del	p.Glu51AsnfsTer72	p.E51Nfs*72	ENST00000269305	NM_001126112.2	51	Gaa/aa					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242465	55242479	+	inframe_deletion	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		P-0012089-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			508	439	304	0	ENST00000275493.2:c.2235_2249del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	745	aaGGAATTAAGAGAAGCa/aaa					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			194	23	369	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			404	93	353	1	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
ASXL1	0	MSKCC	GRCh37	20	31022277	31022277	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0012812-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			557	89	503	0	ENST00000375687.4:c.1762C>T	p.Gln588Ter	p.Q588*	ENST00000375687	NM_015338.5	588	Cag/Tag					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577121	7577121	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913343		P-0010018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	585	469	0	ENST00000269305.4:c.817C>T	p.Arg273Cys	p.R273C	ENST00000269305	NM_001126112.2	273	Cgt/Tgt					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27100207	27100207	+	stop_gained,splice_region_variant	Nonsense_Mutation	SNP	C	C	T			P-0010018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			398	120	276	0	ENST00000324856.7:c.4003C>T	p.Arg1335Ter	p.R1335*	ENST00000324856	NM_006015.4	1335	Cga/Tga					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157222660	157222660	+	splice_donor_variant	Splice_Site	SNP	G	G	A			P-0010018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			463	117	211	0	ENST00000346085.5:c.1926+1G>A		p.X642_splice	ENST00000346085	NM_020732.3	642						NEWRECORD																																																																									
PIK3C2G	0	MSKCC	GRCh37	12	18793466	18793466	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs193113798		P-0010018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			268	255	468	1	ENST00000266497.5:c.4163C>T	p.Thr1388Met	p.T1388M	ENST00000266497		1388	aCg/aTg					NEWRECORD																																																																									
IGF1	0	MSKCC	GRCh37	12	102813345	102813345	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	503	409	0	ENST00000307046.8:c.344C>A	p.Ala115Asp	p.A115D	ENST00000307046	NM_001111285.1	115	gCc/gAc					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1223061	1223061	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010018-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			956	189	372	0	ENST00000326873.7:c.998G>A	p.Arg333His	p.R333H	ENST00000326873	NM_000455.4	333	cGc/cAc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1001	90	460	0	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48603032	48603032	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0010781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			462	51	195	0	ENST00000342988.3:c.1333C>T	p.Arg445Ter	p.R445*	ENST00000342988	NM_005359.5	445	Cga/Tga					NEWRECORD																																																																									
RHOA	0	MSKCC	GRCh37	3	49412973	49412973	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs11552761		P-0010781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1173	157	629	0	ENST00000418115.1:c.50G>A	p.Gly17Glu	p.G17E	ENST00000418115	NM_001664.2	17	gGa/gAa					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40743865	40743865	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			830	87	461	1	ENST00000373198.4:c.3130G>A	p.Val1044Ile	p.V1044I	ENST00000373198	NM_133170.3	1044	Gtc/Atc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41574432	41574448	+	frameshift_variant	Frame_Shift_Del	DEL	GGGACAGATAGGCCAGC	GGGACAGATAGGCCAGC	T			P-0010781-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			853	84	446	0	ENST00000263253.7:c.6717_6733delinsT	p.Met2239IlefsTer35	p.M2239Ifs*35	ENST00000263253	NM_001429.3	2239	atGGGACAGATAGGCCAGCtt/atTtt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			350	379	436	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243809299	243809299	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1057	249	640	0	ENST00000263826.5:c.325C>A	p.Leu109Met	p.L109M	ENST00000263826	NM_005465.4	109	Ctg/Atg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67662366	67662366	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			661	304	644	0	ENST00000264010.4:c.1612C>G	p.Leu538Val	p.L538V	ENST00000264010	NM_006565.3	538	Ctc/Gtc					NEWRECORD																																																																									
TGFBR2	0	MSKCC	GRCh37	3	30732950	30732950	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			217	179	423	0	ENST00000359013.4:c.1638G>A	p.Trp546Ter	p.W546*	ENST00000359013	NM_001024847.2	546	tgG/tgA					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52682409	52682409	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			209	287	660	0	ENST00000394830.3:c.764T>C	p.Leu255Pro	p.L255P	ENST00000394830	NM_018313.4	255	cTc/cCc					NEWRECORD																																																																									
KIT	0	MSKCC	GRCh37	4	55592079	55592079	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs200518498		P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			570	273	668	1	ENST00000288135.5:c.1403C>T	p.Pro468Leu	p.P468L	ENST00000288135	NM_000222.2	468	cCg/cTg					NEWRECORD																																																																									
ARID1B	0	MSKCC	GRCh37	6	157528478	157528478	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0014144-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	171	416	0	ENST00000346085.5:c.6203C>T	p.Pro2068Leu	p.P2068L	ENST00000346085	NM_020732.3	2068	cCa/cTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			895	86	400	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175174	112175174	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0012685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			352	40	155	0	ENST00000257430.4:c.3883G>T	p.Glu1295Ter	p.E1295*	ENST00000257430	NM_000038.5	1295	Gaa/Taa					NEWRECORD																																																																									
TP63	0	MSKCC	GRCh37	3	189526071	189526071	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012685-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			905	81	353	1	ENST00000264731.3:c.335C>T	p.Thr112Met	p.T112M	ENST00000264731	NM_003722.4	112	aCg/aTg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0010832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			288	64	369	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591918	48591918	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			260	74	502	1	ENST00000342988.3:c.1081C>T	p.Arg361Cys	p.R361C	ENST00000342988	NM_005359.5	361	Cgc/Tgc					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578213	7578213	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0010832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			382	117	685	0	ENST00000269305.4:c.636delT	p.Arg213AspfsTer34	p.R213Dfs*34	ENST00000269305	NM_001126112.2	212	ttT/tt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112154824	112154824	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0010832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			394	80	501	0	ENST00000257430.4:c.1095A>T	p.Lys365Asn	p.K365N	ENST00000257430	NM_000038.5	365	aaA/aaT					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5212130	5212130	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			448	114	658	1	ENST00000357368.4:c.4901C>T	p.Thr1634Met	p.T1634M	ENST00000357368	NM_002850.3	1634	aCg/aTg					NEWRECORD																																																																									
JAK3	0	MSKCC	GRCh37	19	17949188	17949188	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010832-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			356	91	618	0	ENST00000458235.1:c.1453C>A	p.Leu485Met	p.L485M	ENST00000458235	NM_000215.3	485	Ctg/Atg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578406	7578406	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934578		P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			196	314	491	0	ENST00000269305.4:c.524G>A	p.Arg175His	p.R175H	ENST00000269305	NM_001126112.2	175	cGc/cAc					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258744	115258744	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	278	479	0	ENST00000369535.4:c.38G>A	p.Gly13Asp	p.G13D	ENST00000369535	NM_002524.4	13	gGt/gAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112173975	112173975	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	107	178	0	ENST00000257430.4:c.2684C>G	p.Ser895Ter	p.S895*	ENST00000257430	NM_000038.5	895	tCa/tGa					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63411276	63411276	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			172	782	382	0	ENST00000330258.3:c.1891C>T	p.Arg631Ter	p.R631*	ENST00000330258	NM_152424.3	631	Cga/Tga					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426645	47426645	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			179	816	401	1	ENST00000377045.4:c.890G>A	p.Arg297Gln	p.R297Q	ENST00000377045	NM_001654.4	297	cGg/cAg					NEWRECORD																																																																									
NSD1	0	MSKCC	GRCh37	5	176636739	176636739	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			343	158	264	0	ENST00000439151.2:c.1339A>C	p.Ile447Leu	p.I447L	ENST00000439151	NM_022455.4	447	Atc/Ctc					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56486845	56486845	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			579	276	475	0	ENST00000267101.3:c.1259G>C	p.Gly420Ala	p.G420A	ENST00000267101	NM_001982.3	420	gGc/gCc					NEWRECORD																																																																									
RAD51D	0	MSKCC	GRCh37	17	33428258	33428258	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011074-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			248	427	684	0	ENST00000335858.7:c.529G>A	p.Gly177Ser	p.G177S	ENST00000335858	NM_133629.2	177	Ggc/Agc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0012965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			308	197	415	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936094	178936094	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913286		P-0012965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			153	33	222	0	ENST00000263967.3:c.1636C>A	p.Gln546Lys	p.Q546K	ENST00000263967	NM_006218.2	546	Cag/Aag					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0012965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			321	64	308	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106509769	106509769	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			461	97	468	0	ENST00000359195.3:c.1763C>T	p.Ala588Val	p.A588V	ENST00000359195	NM_002649.2	588	gCa/gTa					NEWRECORD																																																																									
RPTOR	0	MSKCC	GRCh37	17	78857252	78857252	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			488	79	386	1	ENST00000306801.3:c.1618G>A	p.Ala540Thr	p.A540T	ENST00000306801	NM_020761.2	540	Gcc/Acc					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175750	112175750	+	frameshift_variant	Frame_Shift_Del	DEL	A	A	-			P-0012965-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			231	107	275	0	ENST00000257430.4:c.4459del	p.Thr1487LeufsTer20	p.T1487Lfs*20	ENST00000257430	NM_000038.5	1487	Act/ct					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0013885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			242	34	383	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577547	7577547	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			577	100	616	0	ENST00000269305.4:c.734G>C	p.Gly245Ala	p.G245A	ENST00000269305	NM_001126112.2	245	gGc/gCc					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187554900	187554900	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0013885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			811	144	798	1	ENST00000441802.2:c.4261C>T	p.Gln1421Ter	p.Q1421*	ENST00000441802	NM_005245.3	1421	Cag/Tag					NEWRECORD																																																																									
TERT	0	MSKCC	GRCh37	5	1294280	1294280	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			189	31	284	0	ENST00000310581.5:c.721G>A	p.Gly241Ser	p.G241S	ENST00000310581	NM_198253.2	241	Ggc/Agc					NEWRECORD																																																																									
RASA1	0	MSKCC	GRCh37	5	86645152	86645162	+	frameshift_variant	Frame_Shift_Del	DEL	GTTTATGATGG	GTTTATGATGG	-			P-0013885-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	49	394	0	ENST00000274376.6:c.1225_1235del	p.Phe409ArgfsTer5	p.F409Rfs*5	ENST00000274376	NM_002890.2	408	caGTTTATGATGGga/caga					NEWRECORD																																																																									
XPO1	0	MSKCC	GRCh37	2	61709561	61709561	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			547	426	403	0	ENST00000401558.2:c.2926G>A	p.Glu976Lys	p.E976K	ENST00000401558	NM_003400.3	976	Gaa/Aaa					NEWRECORD																																																																									
ATR	0	MSKCC	GRCh37	3	142272240	142272241	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	CC	CC	TT			P-0010670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			310	155	248	0	ENST00000350721.4:c.2634-1_2634delinsAA		p.X878_splice	ENST00000350721	NM_001184.3	878						NEWRECORD																																																																									
CARD11	0	MSKCC	GRCh37	7	2959091	2959091	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			526	192	222	0	ENST00000396946.4:c.2425C>T	p.Gln809Ter	p.Q809*	ENST00000396946	NM_032415.4	809	Cag/Tag					NEWRECORD																																																																									
INHBA	0	MSKCC	GRCh37	7	41739866	41739866	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			567	406	478	3	ENST00000242208.4:c.107C>T	p.Pro36Leu	p.P36L	ENST00000242208	NM_002192.2	36	cCg/cTg					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0010670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			236	342	260	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8331688	8331688	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			449	306	350	0	ENST00000356435.5:c.5428G>A	p.Glu1810Lys	p.E1810K	ENST00000356435		1810	Gag/Aag					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	55	68	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	55	68	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
SYK	0	MSKCC	GRCh37	9	93650881	93650881	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs200438123		P-0010670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			262	475	224	2	ENST00000375746.1:c.1807G>A	p.Asp603Asn	p.D603N	ENST00000375746	NM_001174167.1	603	Gat/Aat					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133252030	133252030	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			464	286	353	0	ENST00000320574.5:c.1180C>T	p.Gln394Ter	p.Q394*	ENST00000320574	NM_006231.2	394	Cag/Tag					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29527474	29527474	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			337	506	247	0	ENST00000358273.4:c.923C>T	p.Ala308Val	p.A308V	ENST00000358273	NM_001042492.2	308	gCt/gTt					NEWRECORD																																																																									
TCF3	0	MSKCC	GRCh37	19	1619168	1619169	+	missense_variant	Missense_Mutation	DNP	GG	GG	AA			P-0010670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			610	412	528	1	ENST00000344749.5:c.1391_1392delinsTT	p.Ala464Val	p.A464V	ENST00000344749	NM_001136139.2	464	gCC/gTT					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010670-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			28	55	68	0	ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga					NEWRECORD																																																																									
ARID5B	0	MSKCC	GRCh37	10	63829486	63829486	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013936-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			529	140	422	0	ENST00000279873.7:c.1129A>G	p.Ile377Val	p.I377V	ENST00000279873	NM_032199.2	377	Att/Gtt					NEWRECORD																																																																									
SPOP	0	MSKCC	GRCh37	17	47696424	47696424	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0010950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			636	57	534	0	ENST00000347630.2:c.399C>A	p.Phe133Leu	p.F133L	ENST00000347630	NM_001007230.1	133	ttC/ttA					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911743	32911743	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010950-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	55	1016	0	ENST00000380152.3:c.3251G>A	p.Ser1084Asn	p.S1084N	ENST00000380152		1084	aGt/aAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578529	7578529	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012418-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			447	271	543	0	ENST00000269305.4:c.401T>G	p.Phe134Cys	p.F134C	ENST00000269305	NM_001126112.2	134	tTt/tGt					NEWRECORD																																																																									
MGA	0	MSKCC	GRCh37	15	42052629	42052629	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012418-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			957	493	906	1	ENST00000219905.7:c.7300C>T	p.Arg2434Trp	p.R2434W	ENST00000219905	NM_001164273.1	2434	Cgg/Tgg					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134967269	134967269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012418-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			687	159	580	2	ENST00000398015.3:c.2608C>T	p.Arg870Trp	p.R870W	ENST00000398015	NM_004441.4	870	Cgg/Tgg					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41265709	41266219	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	TCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAG	TCCTCCTAATGGCTTGGTGAAATAGCAAACAAGCCACCAGCAGGAATCTAGTCTGGATGACTGCTTCTGGAGCCTGGATGCAGTACCATTCTTCCACTGATTCAGTGAGTAACTGTTAGGTGGTTCCCTAAGGGATTAGGTATTTCATCACTGAGCTAACCCTGGCTATCATTCTGCTTTTCTTGGCTGTCTTTCAGATTTGACTTTATTTCTAAAAATATTTCAATGGGTCATATCACAGATTCTTTTTTTTTAAATTAAAGTAACATTTCCAATCTACTAATGCTAATACTGTTTCGTATTTATAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTCTGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGGATTTTCTCAG	-			P-0012418-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			71	179	100	0	ENST00000349496.5:c.13+141_220del		p.X5_splice	ENST00000349496	NM_001904.3	5						NEWRECORD																																																																									
ARID2	0	MSKCC	GRCh37	12	46254586	46254586	+	frameshift_variant,splice_region_variant	Frame_Shift_Del	DEL	C	C	-			P-0012418-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			469	297	536	0	ENST00000334344.6:c.4776del	p.Asn1592LysfsTer34	p.N1592Kfs*34	ENST00000334344	NM_152641.2	1592	aaC/aa					NEWRECORD																																																																									
FBXW7	55294	MSKCC	GRCh37	4	153249384	153249384	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs1057519895		P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			561	141	700	0	ENST00000281708.4:c.1394G>A	p.Arg465His	p.R465H	ENST00000281708	NM_033632.3	465	cGt/cAt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577548	7577548	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			352	228	790	0	ENST00000269305.4:c.733G>T	p.Gly245Cys	p.G245C	ENST00000269305	NM_001126112.2	245	Ggc/Tgc					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10602328	10602328	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			845	148	1124	0	ENST00000171111.5:c.1250G>T	p.Gly417Val	p.G417V	ENST00000171111	NM_203500.1	417	gGg/gTg					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27022914	27022942	+	frameshift_variant	Frame_Shift_Del	DEL	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	CCGCCGCCGCCAGCAGCCTGGGCAACCCG	-			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			84	17	107	0	ENST00000324856.7:c.31_59del	p.Ser11AlafsTer90	p.S11Afs*90	ENST00000324856	NM_006015.4	7	cCCGCCGCCGCCAGCAGCCTGGGCAACCCG/c					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27023441	27023441	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			698	109	1005	3	ENST00000324856.7:c.547G>T	p.Ala183Ser	p.A183S	ENST00000324856	NM_006015.4	183	Gcg/Tcg					NEWRECORD																																																																									
FUBP1	0	MSKCC	GRCh37	1	78429983	78429983	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			514	215	593	0	ENST00000370768.2:c.896A>G	p.Lys299Arg	p.K299R	ENST00000370768	NM_003902.3	299	aAa/aGa					NEWRECORD																																																																									
IKBKE	0	MSKCC	GRCh37	1	206652413	206652413	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			748	109	876	1	ENST00000367120.3:c.1120A>T	p.Thr374Ser	p.T374S	ENST00000367120	NM_014002.3	374	Acg/Tcg					NEWRECORD																																																																									
AKT3	0	MSKCC	GRCh37	1	243727020	243727020	+	splice_donor_variant	Splice_Site	SNP	A	A	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			547	77	517	0	ENST00000263826.5:c.948+2T>A		p.X316_splice	ENST00000263826	NM_005465.4	316						NEWRECORD																																																																									
CYLD	0	MSKCC	GRCh37	16	50783747	50783747	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			632	142	887	0	ENST00000398568.2:c.138A>G	p.Ile46Met	p.I46M	ENST00000398568	NM_001042412.1	46	atA/atG					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7983630	7983631	+	missense_variant	Missense_Mutation	DNP	AG	AG	TT			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			391	69	700	1	ENST00000319144.4:c.676_677delinsAA	p.Leu226Lys	p.L226K	ENST00000319144	NM_001139.2	226	CTg/AAg					NEWRECORD																																																																									
NOTCH3	0	MSKCC	GRCh37	19	15276687	15276702	+	frameshift_variant	Frame_Shift_Del	DEL	CCAGCAGCCGCTTGGC	CCAGCAGCCGCTTGGC	-			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			452	409	968	0	ENST00000263388.2:c.5563_5578del	p.Ala1855MetfsTer51	p.A1855Mfs*51	ENST00000263388	NM_000435.2	1855	GCCAAGCGGCTGCTGGat/at					NEWRECORD																																																																									
UPF1	0	MSKCC	GRCh37	19	18972856	18972856	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			677	79	808	0	ENST00000262803.5:c.2495G>A	p.Arg832His	p.R832H	ENST00000262803	NM_002911.3	832	cGc/cAc					NEWRECORD																																																																									
ERBB4	0	MSKCC	GRCh37	2	212248681	212248681	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			353	183	571	0	ENST00000342788.4:c.3586C>T	p.Pro1196Ser	p.P1196S	ENST00000342788	NM_005235.2	1196	Ccc/Tcc					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41566521	41566521	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			494	237	654	1	ENST00000263253.7:c.4398G>T	p.Trp1466Cys	p.W1466C	ENST00000263253	NM_001429.3	1466	tgG/tgT					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55131096	55131096	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			475	236	566	1	ENST00000257290.5:c.639G>T	p.Glu213Asp	p.E213D	ENST00000257290	NM_006206.4	213	gaG/gaT					NEWRECORD																																																																									
MSH3	0	MSKCC	GRCh37	5	80160631	80160631	+	splice_acceptor_variant	Splice_Site	SNP	G	G	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			695	91	753	1	ENST00000265081.6:c.3001-1G>T		p.X1001_splice	ENST00000265081	NM_002439.4	1001						NEWRECORD																																																																									
IFNGR1	0	MSKCC	GRCh37	6	137519236	137519236	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0015014-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			659	71	631	0	ENST00000367739.4:c.1402G>A	p.Val468Met	p.V468M	ENST00000367739	NM_000416.2	468	Gtg/Atg					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55259515	55259515	+	missense_variant	Missense_Mutation	SNP	T	T	G	rs121434568		P-0008744-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			862	2368	360	0	ENST00000275493.2:c.2573T>G	p.Leu858Arg	p.L858R	ENST00000275493	NM_005228.3	858	cTg/cGg					NEWRECORD																																																																									
YAP1	0	MSKCC	GRCh37	11	102094475	102094475	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0008744-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			836	257	343	0	ENST00000282441.5:c.1155C>A	p.Phe385Leu	p.F385L	ENST00000282441	NM_001130145.2	385	ttC/ttA					NEWRECORD																																																																									
DOT1L	0	MSKCC	GRCh37	19	2199926	2199926	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0008744-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			803	339	556	0	ENST00000398665.3:c.695T>A	p.Ile232Asn	p.I232N	ENST00000398665	NM_032482.2	232	aTc/aAc					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0014460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			549	129	355	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574018	7574018	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			614	181	625	0	ENST00000269305.4:c.1009C>T	p.Arg337Cys	p.R337C	ENST00000269305	NM_001126112.2	337	Cgc/Tgc					NEWRECORD																																																																									
ARID1A	0	MSKCC	GRCh37	1	27057642	27057642	+	splice_acceptor_variant	Splice_Site	SNP	G	G	C			P-0014460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			604	162	497	0	ENST00000324856.7:c.1351-1G>C		p.X451_splice	ENST00000324856	NM_006015.4	451						NEWRECORD																																																																									
CDC42	0	MSKCC	GRCh37	1	22412937	22412937	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			207	27	141	0	ENST00000344548.3:c.184G>C	p.Glu62Gln	p.E62Q	ENST00000344548	NM_001039802.1	62	Gag/Cag					NEWRECORD																																																																									
RAD54L	0	MSKCC	GRCh37	1	46725767	46725767	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			413	38	296	1	ENST00000371975.4:c.403G>A	p.Asp135Asn	p.D135N	ENST00000371975	NM_003579.3	135	Gac/Aac					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56487153	56487153	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			623	64	498	0	ENST00000267101.3:c.1299G>C	p.Met433Ile	p.M433I	ENST00000267101	NM_001982.3	433	atG/atC					NEWRECORD																																																																									
RNF43	0	MSKCC	GRCh37	17	56435390	56435390	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1113	96	660	0	ENST00000407977.2:c.1747C>T	p.Pro583Ser	p.P583S	ENST00000407977		583	Cct/Tct					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41275142	41275142	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			660	86	300	2	ENST00000349496.5:c.1308G>T	p.Met436Ile	p.M436I	ENST00000349496	NM_001904.3	436	atG/atT					NEWRECORD																																																																									
MST1	0	MSKCC	GRCh37	3	49724993	49724993	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			627	111	373	1	ENST00000449682.2:c.351G>T	p.Lys117Asn	p.K117N	ENST00000449682	NM_020998.3	117	aaG/aaT					NEWRECORD																																																																									
EPHB1	0	MSKCC	GRCh37	3	134873098	134873098	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0014460-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			788	76	577	0	ENST00000398015.3:c.1402G>C	p.Glu468Gln	p.E468Q	ENST00000398015	NM_004441.4	468	Gag/Cag					NEWRECORD																																																																									
AKT1	0	MSKCC	GRCh37	14	105246551	105246551	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	T			P-0014396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			337	163	464	0	ENST00000349310.3:c.49G>A	p.Glu17Lys	p.E17K	ENST00000349310	NM_001014432.1	17	Gag/Aag					NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			166	59	421	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
TERT	7015	MSKCC	GRCh37	5	1295228	1295228	+	upstream_gene_variant	5'Flank	SNP	G	G	A	rs1242535815		P-0014396-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			214	146	478	0				ENST00000310581	NM_198253.2							NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0014197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			667	84	611	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578275	7578275	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014197-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			397	78	910	0	ENST00000269305.4:c.574C>T	p.Gln192Ter	p.Q192*	ENST00000269305	NM_001126112.2	192	Cag/Tag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711866	89711890	+	splice_acceptor_variant,coding_sequence_variant,intron_variant	Splice_Site	DEL	GTCCACCAGGGAGTAACTATTCCCA	GTCCACCAGGGAGTAACTATTCCCA	-			P-0010073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			607	58	348	1	ENST00000371953.3:c.493-6_511del		p.X165_splice	ENST00000371953	NM_000314.4	165						NEWRECORD																																																																									
ERCC5	0	MSKCC	GRCh37	13	103528098	103528113	+	frameshift_variant	Frame_Shift_Del	DEL	GCTCCCGTGAAGAATG	GCTCCCGTGAAGAATG	-			P-0010073-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			397	48	226	0	ENST00000355739.4:c.3407_3422del	p.Ala1136GlufsTer23	p.A1136Efs*23	ENST00000355739	NM_000123.3	1136	GCTCCCGTGAAGAATGga/ga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578551	7578551	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0014695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1053	230	907	0	ENST00000269305.4:c.379T>C	p.Ser127Pro	p.S127P	ENST00000269305	NM_001126112.2	127	Tcc/Ccc					NEWRECORD																																																																									
RB1	0	MSKCC	GRCh37	13	49030478	49030478	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0014695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			546	94	429	0	ENST00000267163.4:c.1953T>A	p.Tyr651Ter	p.Y651*	ENST00000267163	NM_000321.2	651	taT/taA					NEWRECORD																																																																									
KDM6A	0	MSKCC	GRCh37	X	44949127	44949127	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014695-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			434	23	294	0	ENST00000377967.4:c.3688G>A	p.Ala1230Thr	p.A1230T	ENST00000377967	NM_021140.2	1230	Gct/Act					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0014161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			807	144	852	0	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
GRIN2A	0	MSKCC	GRCh37	16	10031854	10031854	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0014161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			563	34	540	1	ENST00000330684.3:c.969G>T	p.Gln323His	p.Q323H	ENST00000330684	NM_001134407.1	323	caG/caT					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89711984	89711988	+	frameshift_variant	Frame_Shift_Del	DEL	AAACT	AAACT	-			P-0014161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			301	56	308	0	ENST00000371953.3:c.603_607del	p.Glu201AspfsTer40	p.E201Dfs*40	ENST00000371953	NM_000314.4	201	gAAACT/g					NEWRECORD																																																																									
PMS2	0	MSKCC	GRCh37	7	6038860	6038860	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014161-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			835	65	761	2	ENST00000265849.7:c.584C>T	p.Ser195Leu	p.S195L	ENST00000265849	NM_000535.5	195	tCa/tTa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178936082	178936082	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs121913273		P-0014278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			801	164	666	1	ENST00000263967.3:c.1624G>A	p.Glu542Lys	p.E542K	ENST00000263967	NM_006218.2	542	Gaa/Aaa					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178938934	178938934	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs867262025		P-0014278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			747	141	592	0	ENST00000263967.3:c.2176G>A	p.Glu726Lys	p.E726K	ENST00000263967	NM_006218.2	726	Gaa/Aaa					NEWRECORD																																																																									
AXL	0	MSKCC	GRCh37	19	41754431	41754431	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			720	296	583	0	ENST00000301178.4:c.1550G>A	p.Gly517Asp	p.G517D	ENST00000301178	NM_021913.4	517	gGc/gAc					NEWRECORD																																																																									
BRAF	0	MSKCC	GRCh37	7	140624405	140624426	+	protein_altering_variant	In_Frame_Del	DEL	GGCGCCGGCGCCGGCGCCGGCC	GGCGCCGGCGCCGGCGCCGGCC	A			P-0014278-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			276	123	212	0	ENST00000288602.6:c.78_99delinsT	p.Glu26_Ala33delinsAsp	p.E26_A33delinsD	ENST00000288602	NM_004333.4	26	gaGGCCGGCGCCGGCGCCGGCGCC/gaT					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578226	7578226	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0006286-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			657	792	612	0	ENST00000269305.4:c.623A>T	p.Asp208Val	p.D208V	ENST00000269305	NM_001126112.2	208	gAc/gTc					NEWRECORD																																																																									
EZH2	0	MSKCC	GRCh37	7	148512029	148512029	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0006286-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			488	302	346	0	ENST00000320356.2:c.1649A>C	p.Lys550Thr	p.K550T	ENST00000320356	NM_004456.4	550	aAg/aCg					NEWRECORD																																																																									
STK11	0	MSKCC	GRCh37	19	1219401	1219401	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			P-0006286-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			496	471	472	0	ENST00000326873.7:c.454del	p.Gln152ArgfsTer9	p.Q152Rfs*9	ENST00000326873	NM_000455.4	151	tgC/tg					NEWRECORD																																																																									
NTRK1	0	MSKCC	GRCh37	1	156841428	156841428	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0006286-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			968	201	389	0	ENST00000524377.1:c.731T>C	p.Leu244Pro	p.L244P	ENST00000524377	NM_002529.3	244	cTg/cCg					NEWRECORD																																																																									
BLM	0	MSKCC	GRCh37	15	91328297	91328297	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0006286-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			687	173	361	2	ENST00000355112.3:c.2809C>T	p.Gln937Ter	p.Q937*	ENST00000355112	NM_000057.2	937	Cag/Tag					NEWRECORD																																																																									
BRIP1	0	MSKCC	GRCh37	17	59820438	59820438	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0006286-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			4587	301	580	0	ENST00000259008.2:c.2315C>G	p.Ser772Ter	p.S772*	ENST00000259008	NM_032043.2	772	tCa/tGa					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591116	67591148	+	inframe_deletion	In_Frame_Del	DEL	TTATCCAGCTGAGAAAGACGAGAGACCAATACT	TTATCCAGCTGAGAAAGACGAGAGACCAATACT	-			P-0006286-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			468	186	302	0	ENST00000274335.5:c.1710_1742del	p.Ile571_Leu581del	p.I571_L581del	ENST00000274335		570	cTTATCCAGCTGAGAAAGACGAGAGACCAATACTtg/ctg					NEWRECORD																																																																									
SDHC	0	MSKCC	GRCh37	1	161332191	161332191	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			113	33	178	1	ENST00000367975.2:c.478G>A	p.Val160Met	p.V160M	ENST00000367975	NM_003001.3	160	Gtg/Atg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577551	7577551	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0014080-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			450	124	735	0	ENST00000269305.4:c.730G>C	p.Gly244Arg	p.G244R	ENST00000269305	NM_001126112.2	244	Ggc/Cgc					NEWRECORD																																																																									
NEGR1	0	MSKCC	GRCh37	1	72748155	72748155	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0012182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			989	244	993	0	ENST00000357731.5:c.23A>T	p.Gln8Leu	p.Q8L	ENST00000357731	NM_173808.2	8	cAg/cTg					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47059226	47059226	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			384	110	430	0	ENST00000409792.3:c.7435T>G	p.Ser2479Ala	p.S2479A	ENST00000409792	NM_014159.6	2479	Tcc/Gcc					NEWRECORD																																																																									
POLE	0	MSKCC	GRCh37	12	133249269	133249269	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0012182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			601	179	604	0	ENST00000320574.5:c.1630G>A	p.Val544Met	p.V544M	ENST00000320574	NM_006231.2	544	Gtg/Atg					NEWRECORD																																																																									
AXIN1	0	MSKCC	GRCh37	16	396155	396155	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0012182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			234	295	417	0	ENST00000262320.3:c.871G>T	p.Glu291Ter	p.E291*	ENST00000262320	NM_003502.3	291	Gag/Tag					NEWRECORD																																																																									
CTNNB1	0	MSKCC	GRCh37	3	41266098	41266106	+	inframe_deletion	In_Frame_Del	DEL	ACTCTGGAA	ACTCTGGAA	-			P-0012182-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			603	128	528	0	ENST00000349496.5:c.95_103del	p.Asp32_Ile35delinsVal	p.D32_I35delinsV	ENST00000349496	NM_001904.3	32	gACTCTGGAAtc/gtc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0011249-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			948	65	387	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0010359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			474	60	274	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
EGFR	1956	MSKCC	GRCh37	7	55242466	55242480	+	inframe_deletion	In_Frame_Del	DEL	GAATTAAGAGAAGCA	GAATTAAGAGAAGCA	-	rs727504233		P-0010359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			681	43	313	0	ENST00000275493.2:c.2236_2250del	p.Glu746_Ala750del	p.E746_A750del	ENST00000275493	NM_005228.3	746	GAATTAAGAGAAGCA/-					NEWRECORD																																																																									
ALOX12B	0	MSKCC	GRCh37	17	7979530	7979530	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010359-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			656	45	284	1	ENST00000319144.4:c.1495C>T	p.Arg499Cys	p.R499C	ENST00000319144	NM_001139.2	499	Cgc/Tgc					NEWRECORD																																																																									
MEN1	0	MSKCC	GRCh37	11	64574558	64574558	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			P-0010490-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			280	602	513	0	ENST00000337652.1:c.852del	p.Leu285Ter	p.L285*	ENST00000337652	NM_130803.2	284	gcC/gc					NEWRECORD																																																																									
NF1	0	MSKCC	GRCh37	17	29559852	29559852	+	stop_gained	Nonsense_Mutation	SNP	C	C	G			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			483	179	293	0	ENST00000358273.4:c.3449C>G	p.Ser1150Ter	p.S1150*	ENST00000358273	NM_001042492.2	1150	tCa/tGa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577610	7577610	+	splice_acceptor_variant	Splice_Site	SNP	T	T	A			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			355	159	229	0	ENST00000269305.4:c.673-2A>T		p.X225_splice	ENST00000269305	NM_001126112.2	225						NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220437245	220437245	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			933	184	477	0	ENST00000243786.2:c.149G>T	p.Gly50Val	p.G50V	ENST00000243786	NM_002191.3	50	gGt/gTt					NEWRECORD																																																																									
FAT1	0	MSKCC	GRCh37	4	187628760	187628760	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			584	63	346	0	ENST00000441802.2:c.2222C>G	p.Ser741Cys	p.S741C	ENST00000441802	NM_005245.3	741	tCc/tGc					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145740820	145740820	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			961	253	377	0	ENST00000428558.2:c.1280C>T	p.Ala427Val	p.A427V	ENST00000428558	NM_004260.3	427	gCt/gTt					NEWRECORD																																																																									
ZFHX3	0	MSKCC	GRCh37	16	72992626	72992626	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			729	110	442	1	ENST00000268489.5:c.1419G>T	p.Glu473Asp	p.E473D	ENST00000268489	NM_006885.3	473	gaG/gaT					NEWRECORD																																																																									
STAT5B	0	MSKCC	GRCh37	17	40369245	40369245	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011343-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1349	136	498	0	ENST00000293328.3:c.1313A>T	p.Glu438Val	p.E438V	ENST00000293328	NM_012448.3	438	gAa/gTa					NEWRECORD																																																																									
TBX3	0	MSKCC	GRCh37	12	115112479	115112479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011162-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			649	346	426	3	ENST00000257566.3:c.1261C>T	p.Arg421Trp	p.R421W	ENST00000257566	NM_016569.3	421	Cgg/Tgg					NEWRECORD																																																																									
PIK3R1	0	MSKCC	GRCh37	5	67591258	67591258	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0011162-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			288	488	460	0	ENST00000274335.5:c.1756C>T	p.Gln586Ter	p.Q586*	ENST00000274335		586	Caa/Taa					NEWRECORD																																																																									
PBRM1	0	MSKCC	GRCh37	3	52685806	52685807	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0011162-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			239	183	539	0	ENST00000394830.3:c.665_666del	p.Ala222AspfsTer3	p.A222Dfs*3	ENST00000394830	NM_018313.4	222	gCA/g					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10188256	10188257	+	frameshift_variant	Frame_Shift_Del	DEL	TG	TG	-			P-0011162-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			525	519	645	0	ENST00000256474.2:c.399_400del	p.Glu134IlefsTer9	p.E134Ifs*9	ENST00000256474	NM_000551.3	133	acTGaa/acaa					NEWRECORD																																																																									
SOX17	0	MSKCC	GRCh37	8	55372149	55372149	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011162-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			286	102	153	0	ENST00000297316.4:c.839G>A	p.Gly280Asp	p.G280D	ENST00000297316	NM_022454.3	280	gGt/gAt					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178916944	178916944	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs1057519933		P-0011542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			377	790	426	0	ENST00000263967.3:c.331A>G	p.Lys111Glu	p.K111E	ENST00000263967	NM_006218.2	111	Aag/Gag					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175582	112175582	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0011542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			831	134	367	0	ENST00000257430.4:c.4291A>G	p.Met1431Val	p.M1431V	ENST00000257430	NM_000038.5	1431	Atg/Gtg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578265	7578265	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0011542-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			359	314	347	0	ENST00000269305.4:c.584T>G	p.Ile195Ser	p.I195S	ENST00000269305	NM_001126112.2	195	aTc/aGc					NEWRECORD																																																																									
SOX2	0	MSKCC	GRCh37	3	181430322	181430322	+	missense_variant	Missense_Mutation	SNP	G	G	T			P-0014776-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			327	147	305	2	ENST00000325404.1:c.174G>T	p.Lys58Asn	p.K58N	ENST00000325404	NM_003106.3	58	aaG/aaT					NEWRECORD																																																																									
ERBB2	0	MSKCC	GRCh37	17	37868208	37868208	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			958	319	419	1	ENST00000269571.5:c.929C>T	p.Ser310Phe	p.S310F	ENST00000269571		310	tCc/tTc					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16004630	16004630	+	stop_gained	Nonsense_Mutation	SNP	G	G	C			P-0010079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1214	74	576	0	ENST00000268712.3:c.2624C>G	p.Ser875Ter	p.S875*	ENST00000268712	NM_006311.3	875	tCa/tGa					NEWRECORD																																																																									
NCOR1	0	MSKCC	GRCh37	17	16004707	16004708	+	missense_variant	Missense_Mutation	DNP	GG	GG	TA			P-0010079-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1389	164	691	0	ENST00000268712.3:c.2546_2547delinsTA	p.Ala849Val	p.A849V	ENST00000268712	NM_006311.3	849	gCC/gTA					NEWRECORD																																																																									
KRAS	0	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			703	63	307	0	ENST00000256078.4:c.35G>C	p.Gly12Ala	p.G12A	ENST00000256078	NM_033360.2	12	gGt/gCt					NEWRECORD																																																																									
CDKN2A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	55	376	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971000	21971000	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			631	55	376	0	ENST00000304494.5:c.358G>T	p.Glu120Ter	p.E120*	ENST00000304494	NM_000077.4	120	Gag/Tag					NEWRECORD																																																																									
CDKN2Ap16INK4A	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	32	301	1	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat					NEWRECORD																																																																									
CDKN2Ap14ARF	0	MSKCC	GRCh37	9	21971036	21971036	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			500	32	301	1	ENST00000304494.5:c.322G>T	p.Asp108Tyr	p.D108Y	ENST00000304494	NM_000077.4	108	Gat/Tat					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578217	7578217	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			979	67	488	0	ENST00000269305.4:c.632C>T	p.Thr211Ile	p.T211I	ENST00000269305	NM_001126112.2	211	aCt/aTt					NEWRECORD																																																																									
EPHA5	0	MSKCC	GRCh37	4	66509082	66509082	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	C	C	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			614	52	235	0	ENST00000273854.3:c.245G>T	p.Gly82Val	p.G82V	ENST00000273854	NM_004439.5	82	gGg/gTg					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87342653	87342653	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			785	73	322	0	ENST00000277120.3:c.938C>A	p.Pro313Gln	p.P313Q	ENST00000277120		313	cCa/cAa					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2138122	2138122	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			688	60	346	0	ENST00000219476.3:c.5142G>C	p.Gln1714His	p.Q1714H	ENST00000219476	NM_000548.3	1714	caG/caC					NEWRECORD																																																																									
BRCA1	0	MSKCC	GRCh37	17	41209121	41209121	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1020	190	490	0	ENST00000357654.3:c.5225A>T	p.Asn1742Ile	p.N1742I	ENST00000357654	NM_007294.3	1742	aAt/aTt					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63410441	63410441	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			861	77	477	1	ENST00000330258.3:c.2726C>T	p.Ser909Phe	p.S909F	ENST00000330258	NM_152424.3	909	tCc/tTc					NEWRECORD																																																																									
TSC2	0	MSKCC	GRCh37	16	2136298	2136303	+	inframe_deletion	In_Frame_Del	DEL	GGACAA	GGACAA	-			P-0011461-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			869	61	407	0	ENST00000219476.3:c.4769_4774del	p.Asp1590_Lys1591del	p.D1590_K1591del	ENST00000219476	NM_000548.3	1589	ccGGACAAg/ccg					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578479	7578479	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0014248-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			1024	42	871	2	ENST00000269305.4:c.451C>T	p.Pro151Ser	p.P151S	ENST00000269305	NM_001126112.2	151	Ccc/Tcc					NEWRECORD																																																																									
LATS2	0	MSKCC	GRCh37	13	21562477	21562477	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012731-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			87	14	105	0	ENST00000382592.4:c.1442C>T	p.Ala481Val	p.A481V	ENST00000382592	NM_014572.2	481	gCg/gTg					NEWRECORD																																																																									
VHL	0	MSKCC	GRCh37	3	10191480	10191480	+	missense_variant	Missense_Mutation	SNP	T	T	A			P-0013728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			364	119	383	1	ENST00000256474.2:c.473T>A	p.Leu158Gln	p.L158Q	ENST00000256474	NM_000551.3	158	cTg/cAg					NEWRECORD																																																																									
KDM5C	0	MSKCC	GRCh37	X	53239741	53239741	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013728-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			207	309	403	0	ENST00000375401.3:c.1601G>C	p.Trp534Ser	p.W534S	ENST00000375401	NM_004187.3	534	tGg/tCg					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578271	7578271	+	missense_variant	Missense_Mutation	SNP	T	T	C	rs786201838		P-0010317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			281	392	436	0	ENST00000269305.4:c.578A>G	p.His193Arg	p.H193R	ENST00000269305	NM_001126112.2	193	cAt/cGt					NEWRECORD																																																																									
PIK3CG	0	MSKCC	GRCh37	7	106508133	106508133	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			182	71	152	0	ENST00000359195.3:c.127G>A	p.Val43Met	p.V43M	ENST00000359195	NM_002649.2	43	Gtg/Atg					NEWRECORD																																																																									
SMAD4	0	MSKCC	GRCh37	18	48591894	48591894	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0010317-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			415	374	699	0	ENST00000342988.3:c.1057T>G	p.Tyr353Asp	p.Y353D	ENST00000342988	NM_005359.5	353	Tac/Gac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			408	483	587	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175513	112175513	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			210	513	550	0	ENST00000257430.4:c.4222G>T	p.Glu1408Ter	p.E1408*	ENST00000257430	NM_000038.5	1408	Gaa/Taa					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112173917	112173917	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs121913333		P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			593	105	480	0	ENST00000257430.4:c.2626C>T	p.Arg876Ter	p.R876*	ENST00000257430	NM_000038.5	876	Cga/Tga					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578395	7578395	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			62	434	386	0	ENST00000269305.4:c.535C>G	p.His179Asp	p.H179D	ENST00000269305	NM_001126112.2	179	Cat/Gat					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56481823	56481823	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			867	216	732	0	ENST00000267101.3:c.751G>A	p.Asp251Asn	p.D251N	ENST00000267101	NM_001982.3	251	Gac/Aac					NEWRECORD																																																																									
INHA	0	MSKCC	GRCh37	2	220440081	220440081	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1464	161	1079	0	ENST00000243786.2:c.934C>T	p.Pro312Ser	p.P312S	ENST00000243786	NM_002191.3	312	Cct/Tct					NEWRECORD																																																																									
EIF4A2	0	MSKCC	GRCh37	3	186504360	186504360	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			621	171	504	0	ENST00000323963.5:c.697A>G	p.Ile233Val	p.I233V	ENST00000323963		233	Att/Gtt					NEWRECORD																																																																									
BRCA2	0	MSKCC	GRCh37	13	32911478	32911478	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			2173	481	1206	0	ENST00000380152.3:c.2986C>G	p.Leu996Val	p.L996V	ENST00000380152		996	Ctc/Gtc					NEWRECORD																																																																									
CDH1	0	MSKCC	GRCh37	16	68772278	68772278	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0013277-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			658	210	689	0	ENST00000261769.5:c.127C>T	p.Arg43Trp	p.R43W	ENST00000261769	NM_004360.3	43	Cgg/Tgg					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			581	51	230	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
PMS1	0	MSKCC	GRCh37	2	190682778	190682778	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0011453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			427	35	150	0	ENST00000441310.2:c.454C>A	p.Leu152Ile	p.L152I	ENST00000441310	NM_000534.4	152	Cta/Ata					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437792	52437792	+	stop_gained	Nonsense_Mutation	SNP	T	T	A			P-0011453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1187	107	567	0	ENST00000460680.1:c.1369A>T	p.Lys457Ter	p.K457*	ENST00000460680	NM_004656.3	457	Aag/Tag					NEWRECORD																																																																									
KEAP1	0	MSKCC	GRCh37	19	10610163	10610163	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0011453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			770	87	311	0	ENST00000171111.5:c.547A>C	p.Asn183His	p.N183H	ENST00000171111	NM_203500.1	183	Aat/Cat					NEWRECORD																																																																									
AMER1	0	MSKCC	GRCh37	X	63412038	63412038	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0011453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			738	55	366	0	ENST00000330258.3:c.1129G>A	p.Asp377Asn	p.D377N	ENST00000330258	NM_152424.3	377	Gat/Aat					NEWRECORD																																																																									
BAP1	0	MSKCC	GRCh37	3	52437803	52437809	+	protein_altering_variant	In_Frame_Del	DEL	TTGAGCT	TTGAGCT	A			P-0011453-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1199	90	568	0	ENST00000460680.1:c.1352_1358delinsT	p.Lys451_Lys453delinsIle	p.K451_K453delinsI	ENST00000460680	NM_004656.3	451	aAGCTCAAa/aTa					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577112	7577112	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0012966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			440	463	634	0	ENST00000269305.4:c.826G>C	p.Ala276Pro	p.A276P	ENST00000269305	NM_001126112.2	276	Gcc/Ccc					NEWRECORD																																																																									
TET2	0	MSKCC	GRCh37	4	106155137	106155137	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			368	415	522	0	ENST00000380013.4:c.38G>C	p.Arg13Thr	p.R13T	ENST00000380013	NM_001127208.2	13	aGa/aCa					NEWRECORD																																																																									
ARAF	0	MSKCC	GRCh37	X	47426057	47426057	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012966-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			936	257	775	1	ENST00000377045.4:c.577G>A	p.Asp193Asn	p.D193N	ENST00000377045	NM_001654.4	193	Gac/Aac					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0011253-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			984	21	461	0	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
GNAQ	0	MSKCC	GRCh37	9	80412493	80412493	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010644-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			670	498	509	0	ENST00000286548.4:c.548G>A	p.Arg183Gln	p.R183Q	ENST00000286548	NM_002072.3	183	cGa/cAa					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176015390	176015390	+	missense_variant	Missense_Mutation	SNP	A	A	G			P-0012513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			855	139	696	0	ENST00000367669.3:c.1348T>C	p.Tyr450His	p.Y450H	ENST00000367669	NM_022457.5	450	Tat/Cat					NEWRECORD																																																																									
NTRK2	0	MSKCC	GRCh37	9	87563461	87563461	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0012513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			534	55	547	0	ENST00000277120.3:c.1849G>A	p.Val617Ile	p.V617I	ENST00000277120		617	Gtc/Atc					NEWRECORD																																																																									
ATM	0	MSKCC	GRCh37	11	108117843	108117843	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0012513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			302	42	339	0	ENST00000278616.4:c.1054A>C	p.Ile352Leu	p.I352L	ENST00000278616	NM_000051.3	352	Atc/Ctc					NEWRECORD																																																																									
MLL2	0	MSKCC	GRCh37	12	49435219	49435219	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0012513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			316	106	392	0	ENST00000301067.7:c.6334G>T	p.Ala2112Ser	p.A2112S	ENST00000301067	NM_003482.3	2112	Gca/Tca					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56487947	56487947	+	missense_variant	Missense_Mutation	SNP	G	G	C			P-0012513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			839	69	675	0	ENST00000267101.3:c.1678G>C	p.Glu560Gln	p.E560Q	ENST00000267101	NM_001982.3	560	Gag/Cag					NEWRECORD																																																																									
PTEN	0	MSKCC	GRCh37	10	89624231	89624252	+	frameshift_variant	Frame_Shift_Del	DEL	CAGCCATCATCAAAGAGATCGT	CAGCCATCATCAAAGAGATCGT	-			P-0012513-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			80	68	96	0	ENST00000371953.3:c.5_26del	p.Thr2IlefsTer15	p.T2Ifs*15	ENST00000371953	NM_000314.4	2	aCAGCCATCATCAAAGAGATCGTt/at					NEWRECORD																																																																									
PPP2R1A	5518	MSKCC	GRCh37	19	52715971	52715971	+	missense_variant	Missense_Mutation	SNP	C	C	G	rs786205228		P-0013101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			623	186	844	0	ENST00000322088.6:c.536C>G	p.Pro179Arg	p.P179R	ENST00000322088	NM_014225.5	179	cCc/cGc					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7578553	7578553	+	missense_variant,splice_region_variant	Missense_Mutation	SNP	T	T	C			P-0013101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			314	369	568	0	ENST00000269305.4:c.377A>G	p.Tyr126Cys	p.Y126C	ENST00000269305	NM_001126112.2	126	tAc/tGc					NEWRECORD																																																																									
EPHA3	0	MSKCC	GRCh37	3	89448565	89448565	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0013101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			612	360	782	1	ENST00000336596.2:c.1529G>A	p.Arg510Gln	p.R510Q	ENST00000336596	NM_005233.5	510	cGa/cAa					NEWRECORD																																																																									
PIK3CA	0	MSKCC	GRCh37	3	178952117	178952117	+	missense_variant	Missense_Mutation	SNP	A	A	T			P-0013101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			538	214	560	0	ENST00000263967.3:c.3172A>T	p.Ile1058Phe	p.I1058F	ENST00000263967	NM_006218.2	1058	Atc/Ttc					NEWRECORD																																																																									
RECQL4	0	MSKCC	GRCh37	8	145741782	145742480	+	splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant	Splice_Site	DEL	CTGAAGCCTCTGGGCCCTGGGAGCCAGCACCAGGACCAAGGACAGCCGACTCACCAGGGATCAGAAGTTGTGATTCCTCTGAGCCTAGATCAGGCCTGCAGGCTTTGGGGGCCCCCAGAAAATCTGGGACCTCACTGTGACATCGCTGTAACCAGCCAGGATCTAGGGAGCCCAGCCGCTGGCTCAGGGATGCCTGCAGATGCTGGAGCCGGCCTGGCCTTGGCTGGGGCTCAGGGAGCTGTGGAGGCTCATCACTGACTTTTTCTGCAAAGGAGGGGACAGGCCCTGTACCTGGGGGCTTTGGGGTGGATGCCTTAGATGAGGCTCTTCCTAGAGGCCACGGTCTGCGGCCCAGGGCTGGTCCGGCCTGGGAGGGGAACAACAGAACAGCAGGAGGAACTCAGGCCCCTGAGCTACTGTAGACTCTAAAACCTACCTGAGTCCCCACGCTCAATTGTAGAGCAGGCTAATTAGCACAAGGCTGGACTAGAAAGGGAGTCAAGGGCGAAGGCCCCGAGAAGCTCCCTGAAGACTCGTGCCCTGGTTGGCACAGGGGCCCGTGCCTGTCTGTGTGGAAAAAATGACAAGAGGGCGACCCGGACCGGAAGCAGCTGTGGACCTAGCGTGGACTCACTGCCTGCCCACTCCTCACCTGCAGGGTGCCTTTCAGATTGGCCTTGAGCCGCTGCCCGTAGTCCG	CTGAAGCCTCTGGGCCCTGGGAGCCAGCACCAGGACCAAGGACAGCCGACTCACCAGGGATCAGAAGTTGTGATTCCTCTGAGCCTAGATCAGGCCTGCAGGCTTTGGGGGCCCCCAGAAAATCTGGGACCTCACTGTGACATCGCTGTAACCAGCCAGGATCTAGGGAGCCCAGCCGCTGGCTCAGGGATGCCTGCAGATGCTGGAGCCGGCCTGGCCTTGGCTGGGGCTCAGGGAGCTGTGGAGGCTCATCACTGACTTTTTCTGCAAAGGAGGGGACAGGCCCTGTACCTGGGGGCTTTGGGGTGGATGCCTTAGATGAGGCTCTTCCTAGAGGCCACGGTCTGCGGCCCAGGGCTGGTCCGGCCTGGGAGGGGAACAACAGAACAGCAGGAGGAACTCAGGCCCCTGAGCTACTGTAGACTCTAAAACCTACCTGAGTCCCCACGCTCAATTGTAGAGCAGGCTAATTAGCACAAGGCTGGACTAGAAAGGGAGTCAAGGGCGAAGGCCCCGAGAAGCTCCCTGAAGACTCGTGCCCTGGTTGGCACAGGGGCCCGTGCCTGTCTGTGTGGAAAAAATGACAAGAGGGCGACCCGGACCGGAAGCAGCTGTGGACCTAGCGTGGACTCACTGCCTGCCCACTCCTCACCTGCAGGGTGCCTTTCAGATTGGCCTTGAGCCGCTGCCCGTAGTCCG	-			P-0013101-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1925	105	767	0	ENST00000428558.2:c.309_722del		p.X103_splice	ENST00000428558	NM_004260.3	103	cCGGACTACGGGCAGCGGCTCAAGGCCAATCTGAAAGGCACCCTGCAGGTGAGGAGTGGGCAGGCAGTGAGTCCACGCTAGGTCCACAGCTGCTTCCGGTCCGGGTCGCCCTCTTGTCATTTTTTCCACACAGACAGGCACGGGCCCCTGTGCCAACCAGGGCACGAGTCTTCAGGGAGCTTCTCGGGGCCTTCGCCCTTGACTCCCTTTCTAGTCCAGCCTTGTGCTAATTAGCCTGCTCTACAATTGAGCGTGGGGACTCAGGTAGGTTTTAGAGTCTACAGTAGCTCAGGGGCCTGAGTTCCTCCTGCTGTTCTGTTGTTCCCCTCCCAGGCCGGACCAGCCCTGGGCCGCAGACCGTGGCCTCTAGGAAGAGCCTCATCTAAGGCATCCACCCCAAAGCCCCCAGGTACAGGGCCTGTCCCCTCCTTTGCAGAAAAAGTCAGTGATGAGCCTCCACAGCTCCCTGAGCCCCAGCCAAGGCCAGGCCGGCTCCAGCATCTGCAGGCATCCCTGAGCCAGCGGCTGGGCTCCCTAGATCCTGGCTGGTTACAGCGATGTCACAGTGAGGTCCCAGATTTTCTGGGGGCCCCCAAAGCCTGCAGGCCTGATCTAGGCTCAGAGGAATCACAACTTCTGATCCCTGGTGAGTCGGCTGTCCTTGGTCCTGGTGCTGGCTCCCAGGGCCCAGAGGCTTCAGcc/ccc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913529		P-0010691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1054	71	480	1	ENST00000256078.4:c.35G>T	p.Gly12Val	p.G12V	ENST00000256078	NM_033360.2	12	gGt/gTt					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7577538	7577538	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			980	86	508	0	ENST00000269305.4:c.743G>A	p.Arg248Gln	p.R248Q	ENST00000269305	NM_001126112.2	248	cGg/cAg					NEWRECORD																																																																									
PTPRT	0	MSKCC	GRCh37	20	40980903	40980903	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			640	41	394	0	ENST00000373198.4:c.1583C>T	p.Ser528Leu	p.S528L	ENST00000373198	NM_133170.3	528	tCg/tTg					NEWRECORD																																																																									
BCL2L1	0	MSKCC	GRCh37	20	30253772	30253772	+	missense_variant	Missense_Mutation	SNP	A	A	C			P-0010691-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1347	105	574	0	ENST00000307677.4:c.682T>G	p.Ser228Ala	p.S228A	ENST00000307677	NM_138578.1	228	Tca/Gca					NEWRECORD																																																																									
RFWD2	0	MSKCC	GRCh37	1	176176012	176176018	+	frameshift_variant	Frame_Shift_Del	DEL	GGGAAGA	GGGAAGA	-			P-0014204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			511	461	659	0	ENST00000367669.3:c.97_103del	p.Ser33ArgfsTer65	p.S33Rfs*65	ENST00000367669	NM_022457.5	33	TCTTCCCcg/cg					NEWRECORD																																																																									
ETV6	0	MSKCC	GRCh37	12	12038900	12038900	+	missense_variant	Missense_Mutation	SNP	T	T	G			P-0014204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			583	449	513	0	ENST00000396373.4:c.1193T>G	p.Leu398Arg	p.L398R	ENST00000396373	NM_001987.4	398	cTg/cGg					NEWRECORD																																																																									
PAK7	0	MSKCC	GRCh37	20	9624803	9624803	+	stop_gained	Nonsense_Mutation	SNP	G	G	T			P-0014204-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			615	105	396	0	ENST00000353224.5:c.174C>A	p.Cys58Ter	p.C58*	ENST00000353224	NM_177990.2	58	tgC/tgA					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7574003	7574003	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0010738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			261	348	442	1	ENST00000269305.4:c.1024C>T	p.Arg342Ter	p.R342*	ENST00000269305	NM_001126112.2	342	Cga/Tga					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38510560	38510560	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			509	139	336	0	ENST00000254066.5:c.814C>T	p.Arg272Trp	p.R272W	ENST00000254066	NM_000964.3	272	Cgg/Tgg					NEWRECORD																																																																									
PTPRS	0	MSKCC	GRCh37	19	5286145	5286145	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010738-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			323	125	342	0	ENST00000357368.4:c.7C>T	p.Pro3Ser	p.P3S	ENST00000357368	NM_002850.3	3	Ccc/Tcc					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0014039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			583	58	578	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
AXIN2	0	MSKCC	GRCh37	17	63554453	63554453	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014039-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			652	73	669	0	ENST00000307078.5:c.286C>T	p.Arg96Ter	p.R96*	ENST00000307078	NM_004655.3	96	Cga/Tga					NEWRECORD																																																																									
ARID1B	57492	MSKCC	GRCh37	6	157099406	157099426	+	inframe_deletion	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAGCAA	CAGCAGCAGCAGCAGCAGCAA	-	rs775084783		P-0000984-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			359	108	369	0	ENST00000346085.5:c.363_383del	p.Gln125_Gln131del	p.Q125_Q131del	ENST00000346085	NM_020732.3	115	CAGCAGCAGCAGCAGCAGCAA/-					NEWRECORD																																																																									
PIK3CA	5290	MSKCC	GRCh37	3	178952085	178952085	+	missense_variant	Missense_Mutation	SNP	A	A	G	rs121913279		P-0000984-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			464	407	495	0	ENST00000263967.3:c.3140A>G	p.His1047Arg	p.H1047R	ENST00000263967	NM_006218.2	1047	cAt/cGt					NEWRECORD																																																																									
PDGFRA	0	MSKCC	GRCh37	4	55138642	55138642	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs143344944		P-0000984-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			413	179	465	1	ENST00000257290.5:c.1319C>T	p.Thr440Met	p.T440M	ENST00000257290	NM_006206.4	440	aCg/aTg					NEWRECORD																																																																									
CTCF	0	MSKCC	GRCh37	16	67645934	67645934	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0000984-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			273	294	569	2	ENST00000264010.4:c.862C>T	p.His288Tyr	p.H288Y	ENST00000264010	NM_006565.3	288	Cac/Tac					NEWRECORD																																																																									
HIST3H3	0	MSKCC	GRCh37	1	228612645	228612645	+	missense_variant	Missense_Mutation	SNP	C	C	A			P-0000984-T02-IM5									Unknown	SOMATIC				MSK-IMPACT			705	303	968	0	ENST00000366696.1:c.382G>T	p.Ala128Ser	p.A128S	ENST00000366696	NM_003493.2	128	Gca/Tca					NEWRECORD																																																																									
TP53	0	MSKCC	GRCh37	17	7578222	7578223	+	frameshift_variant	Frame_Shift_Del	DEL	TC	TC	-			P-0010742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			471	569	620	1	ENST00000269305.4:c.626_627delGA	p.Arg209LysfsTer6	p.R209Kfs*6	ENST00000269305	NM_001126112.2	209	aGA/a					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112175212	112175216	+	frameshift_variant	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			P-0010742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			291	75	191	0	ENST00000257430.4:c.3927_3931del	p.Glu1309AspfsTer4	p.E1309Dfs*4	ENST00000257430	NM_000038.5	1307	atAAAAGaa/ataa					NEWRECORD																																																																									
NRAS	0	MSKCC	GRCh37	1	115258747	115258747	+	missense_variant	Missense_Mutation	SNP	C	C	T			P-0010742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			545	783	399	3	ENST00000369535.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000369535	NM_002524.4	12	gGt/gAt					NEWRECORD																																																																									
PTPRD	0	MSKCC	GRCh37	9	8518080	8518080	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0010742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			977	120	367	0	ENST00000356435.5:c.1311G>C	p.Gln437His	p.Q437H	ENST00000356435		437	caG/caC					NEWRECORD																																																																									
RARA	0	MSKCC	GRCh37	17	38487588	38487588	+	missense_variant	Missense_Mutation	SNP	G	G	A			P-0010742-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			495	687	617	1	ENST00000254066.5:c.118G>A	p.Ala40Thr	p.A40T	ENST00000254066	NM_000964.3	40	Gct/Act					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577120	7577120	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs28934576		P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1034	143	815	1	ENST00000269305.4:c.818G>A	p.Arg273His	p.R273H	ENST00000269305	NM_001126112.2	273	cGt/cAt					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398284	25398284	+	missense_variant	Missense_Mutation	SNP	C	C	T	rs121913529		P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			789	340	601	0	ENST00000256078.4:c.35G>A	p.Gly12Asp	p.G12D	ENST00000256078	NM_033360.2	12	gGt/gAt					NEWRECORD																																																																									
TP53	7157	MSKCC	GRCh37	17	7577094	7577094	+	missense_variant	Missense_Mutation	SNP	G	G	A	rs28934574		P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			953	137	772	1	ENST00000269305.4:c.844C>T	p.Arg282Trp	p.R282W	ENST00000269305	NM_001126112.2	282	Cgg/Tgg					NEWRECORD																																																																									
APC	324	MSKCC	GRCh37	5	112151204	112151204	+	stop_gained	Nonsense_Mutation	SNP	C	C	T	rs786201856		P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			882	100	660	1	ENST00000257430.4:c.847C>T	p.Arg283Ter	p.R283*	ENST00000257430	NM_000038.5	283	Cga/Tga					NEWRECORD																																																																									
MAP3K1	0	MSKCC	GRCh37	5	56152491	56152491	+	stop_gained	Nonsense_Mutation	SNP	C	C	T			P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			549	74	412	1	ENST00000399503.3:c.547C>T	p.Arg183Ter	p.R183*	ENST00000399503	NM_005921.1	183	Cga/Tga					NEWRECORD																																																																									
APC	0	MSKCC	GRCh37	5	112175245	112175245	+	frameshift_variant	Frame_Shift_Del	DEL	T	T	-			P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			580	85	415	0	ENST00000257430.4:c.3954del	p.Pro1319LeufsTer2	p.P1319Lfs*2	ENST00000257430	NM_000038.5	1318	gaT/ga					NEWRECORD																																																																									
FBXW7	0	MSKCC	GRCh37	4	153271228	153271228	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			678	168	505	0	ENST00000281708.4:c.550G>T	p.Gly184Ter	p.G184*	ENST00000281708	NM_033632.3	184	Gga/Tga					NEWRECORD																																																																									
ERBB3	0	MSKCC	GRCh37	12	56478928	56478928	+	missense_variant	Missense_Mutation	SNP	C	C	G			P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			986	138	858	0	ENST00000267101.3:c.384C>G	p.Ser128Arg	p.S128R	ENST00000267101	NM_001982.3	128	agC/agG					NEWRECORD																																																																									
EP300	0	MSKCC	GRCh37	22	41523522	41523626	+	inframe_deletion	In_Frame_Del	DEL	CAGGCCTGGTGACTCCAGTTGCCCAAGGGATGGGTTCTGGAGCACATACAGCTGATCCAGAGAAGCGCAAGCTCATCCAGCAGCAGCTTGTTCTCCTTTTGCATG	CAGGCCTGGTGACTCCAGTTGCCCAAGGGATGGGTTCTGGAGCACATACAGCTGATCCAGAGAAGCGCAAGCTCATCCAGCAGCAGCTTGTTCTCCTTTTGCATG	-			P-0013263-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			525	248	497	0	ENST00000263253.7:c.939_1043del	p.Gly314_Ala348del	p.G314_A348del	ENST00000263253	NM_001429.3	313	cCAGGCCTGGTGACTCCAGTTGCCCAAGGGATGGGTTCTGGAGCACATACAGCTGATCCAGAGAAGCGCAAGCTCATCCAGCAGCAGCTTGTTCTCCTTTTGCATGct/cct					NEWRECORD																																																																									
KRAS	3845	MSKCC	GRCh37	12	25398285	25398285	+	missense_variant	Missense_Mutation	SNP	C	C	A	rs121913530		P-0011206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			705	61	310	0	ENST00000256078.4:c.34G>T	p.Gly12Cys	p.G12C	ENST00000256078	NM_033360.2	12	Ggt/Tgt					NEWRECORD																																																																									
NTRK3	0	MSKCC	GRCh37	15	88420234	88420234	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0011206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			776	44	442	0	ENST00000360948.2:c.2452A>G	p.Lys818Glu	p.K818E	ENST00000360948	NM_001012338.2	818	Aag/Gag					NEWRECORD																																																																									
XIAP	0	MSKCC	GRCh37	X	123022468	123022469	+	splice_acceptor_variant,coding_sequence_variant	Splice_Site	DNP	GG	GG	CT			P-0011206-T01-IM5									Unknown	SOMATIC				MSK-IMPACT			1136	66	618	0	ENST00000355640.3:c.878-1_878delinsCT		p.X293_splice	ENST00000355640		293						NEWRECORD																																																																									
BRAF	673	MSKCC	GRCh37	7	140453136	140453136	+	missense_variant	Missense_Mutation	SNP	A	A	T	rs113488022		P-0014272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			542	112	381	0	ENST00000288602.6:c.1799T>A	p.Val600Glu	p.V600E	ENST00000288602	NM_004333.4	600	gTg/gAg					NEWRECORD																																																																									
FH	0	MSKCC	GRCh37	1	241667381	241667381	+	missense_variant	Missense_Mutation	SNP	T	T	C			P-0014272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			802	122	449	0	ENST00000366560.3:c.1069A>G	p.Ile357Val	p.I357V	ENST00000366560	NM_000143.3	357	Atc/Gtc					NEWRECORD																																																																									
CREBBP	0	MSKCC	GRCh37	16	3779719	3779719	+	stop_gained	Nonsense_Mutation	SNP	G	G	A			P-0014272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			519	149	411	0	ENST00000262367.5:c.5329C>T	p.Gln1777Ter	p.Q1777*	ENST00000262367	NM_004380.2	1777	Cag/Tag					NEWRECORD																																																																									
SETD2	0	MSKCC	GRCh37	3	47163698	47163698	+	stop_gained	Nonsense_Mutation	SNP	C	C	A			P-0014272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			311	81	273	1	ENST00000409792.3:c.2428G>T	p.Glu810Ter	p.E810*	ENST00000409792	NM_014159.6	810	Gaa/Taa					NEWRECORD																																																																									
NOTCH1	0	MSKCC	GRCh37	9	139438537	139438538	+	missense_variant	Missense_Mutation	DNP	GC	GC	AA			P-0014272-T01-IM6									Unknown	SOMATIC				MSK-IMPACT			799	174	644	0	ENST00000277541.6:c.78_79delinsTT	p.Gln26_Pro27delinsHisSer	p.Q26_P27delinsHS	ENST00000277541	NM_017617.3	26	caGCcc/caTTcc					NEWRECORD																																																																									
